Chr01	irgsp1_rep	mRNA	2983	10815	.	+	.	ID=Os01t0100100-01;Name=Os01t0100100-01;Locus_id=Os01g0100100;Note=RabGAP/TBC domain containing protein.;Transcript_evidence=AK242339 (DDBJ%2C antisense transcript);ORF_evidence=Q655M0 (UniProt);GO=Molecular Function: Rab GTPase activator activity (GO:0005097),Cellular Component: intracellular (GO:0005622),Biological Process: regulation of Rab GTPase activity (GO:0032313);InterPro=RabGAP/TBC (IPR000195);NIAS_FLcDNA=J075199P03;TENOR=Os01t0100100-01;KEGG=Os01t0100100-01
Chr01	irgsp1_rep	five_prime_UTR	2983	3268	.	+	.	Parent=Os01t0100100-01
Chr01	irgsp1_rep	five_prime_UTR	3354	3448	.	+	.	Parent=Os01t0100100-01
Chr01	irgsp1_rep	CDS	3449	3616	.	+	0	Parent=Os01t0100100-01
Chr01	irgsp1_rep	CDS	4357	4455	.	+	0	Parent=Os01t0100100-01
Chr01	irgsp1_rep	CDS	5457	5560	.	+	0	Parent=Os01t0100100-01
Chr01	irgsp1_rep	CDS	7136	7944	.	+	1	Parent=Os01t0100100-01
Chr01	irgsp1_rep	CDS	8028	8150	.	+	2	Parent=Os01t0100100-01
Chr01	irgsp1_rep	CDS	8232	8320	.	+	2	Parent=Os01t0100100-01
Chr01	irgsp1_rep	CDS	8408	8608	.	+	0	Parent=Os01t0100100-01
Chr01	irgsp1_rep	CDS	9210	9615	.	+	0	Parent=Os01t0100100-01
Chr01	irgsp1_rep	CDS	10102	10187	.	+	2	Parent=Os01t0100100-01
Chr01	irgsp1_rep	CDS	10274	10297	.	+	0	Parent=Os01t0100100-01
Chr01	irgsp1_rep	three_prime_UTR	10298	10430	.	+	.	Parent=Os01t0100100-01
Chr01	irgsp1_rep	three_prime_UTR	10504	10815	.	+	.	Parent=Os01t0100100-01
Chr01	irgsp1_rep	mRNA	11218	12435	.	+	.	ID=Os01t0100200-01;Name=Os01t0100200-01;Locus_id=Os01g0100200;Note=Conserved hypothetical protein.;Transcript_evidence=AK059894 (DDBJ%2C Best hit);ORF_evidence=B8ACR2 (UniProt);NIAS_FLcDNA=006-208-E01;Expression=AK059894;TENOR=Os01t0100200-01;KEGG=Os01t0100200-01
Chr01	irgsp1_rep	five_prime_UTR	11218	11797	.	+	.	Parent=Os01t0100200-01
Chr01	irgsp1_rep	CDS	11798	12060	.	+	0	Parent=Os01t0100200-01
Chr01	irgsp1_rep	CDS	12152	12317	.	+	1	Parent=Os01t0100200-01
Chr01	irgsp1_rep	three_prime_UTR	12318	12435	.	+	.	Parent=Os01t0100200-01
Chr01	irgsp1_rep	mRNA	11372	12284	.	-	.	ID=Os01t0100300-00;Name=Os01t0100300-00;Locus_id=Os01g0100300;Note=CytoChrome P450 domain containing protein.;Transcript_evidence=AK365211 (DDBJ);ORF_evidence=B9EYQ3 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);TENOR=Os01t0100300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	12146	12284	.	-	0	Parent=Os01t0100300-00
Chr01	irgsp1_rep	CDS	11372	12042	.	-	2	Parent=Os01t0100300-00
Chr01	irgsp1_rep	mRNA	12721	15685	.	+	.	ID=Os01t0100400-01;Name=Os01t0100400-01;Locus_id=Os01g0100400;Note=Similar to Pectinesterase-like protein.;Transcript_evidence=AK101455 (DDBJ%2C Best hit);ORF_evidence=Q1EPX7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: copper ion binding (GO:0005507),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Multicopper oxidase%2C type 1 (IPR001117),Cupredoxin (IPR008972),Multicopper oxidase%2C type 2 (IPR011706),Multicopper oxidase%2C type 3 (IPR011707);NIAS_FLcDNA=J033040A20;TENOR=Os01t0100400-01;KEGG=Os01t0100400-01
Chr01	irgsp1_rep	five_prime_UTR	12721	12773	.	+	.	Parent=Os01t0100400-01
Chr01	irgsp1_rep	CDS	12774	13813	.	+	0	Parent=Os01t0100400-01
Chr01	irgsp1_rep	CDS	13906	14271	.	+	1	Parent=Os01t0100400-01
Chr01	irgsp1_rep	CDS	14359	14437	.	+	1	Parent=Os01t0100400-01
Chr01	irgsp1_rep	CDS	14969	15171	.	+	0	Parent=Os01t0100400-01
Chr01	irgsp1_rep	CDS	15266	15359	.	+	1	Parent=Os01t0100400-01
Chr01	irgsp1_rep	three_prime_UTR	15360	15685	.	+	.	Parent=Os01t0100400-01
Chr01	irgsp1_rep	mRNA	12808	13978	.	-	.	ID=Os01t0100466-00;Name=Os01t0100466-00;Locus_id=Os01g0100466;Note=Hypothetical protein.;Transcript_evidence=tplb0021n10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0100466-00
Chr01	irgsp1_rep	five_prime_UTR	13880	13978	.	-	.	Parent=Os01t0100466-00
Chr01	irgsp1_rep	five_prime_UTR	13103	13782	.	-	.	Parent=Os01t0100466-00
Chr01	irgsp1_rep	CDS	12869	13102	.	-	0	Parent=Os01t0100466-00
Chr01	irgsp1_rep	three_prime_UTR	12808	12868	.	-	.	Parent=Os01t0100466-00
Chr01	irgsp1_rep	mRNA	16399	20144	.	+	.	ID=Os01t0100500-01;Name=Os01t0100500-01;Locus_id=Os01g0100500;Note=Immunoglobulin-like domain containing protein.;Transcript_evidence=AK067316 (DDBJ%2C Best hit);ORF_evidence=A2WJL2 (UniProt);NIAS_FLcDNA=J013104J17;Expression=AK067316;TENOR=Os01t0100500-01;KEGG=Os01t0100500-01
Chr01	irgsp1_rep	five_prime_UTR	16399	16598	.	+	.	Parent=Os01t0100500-01
Chr01	irgsp1_rep	CDS	16599	16976	.	+	0	Parent=Os01t0100500-01
Chr01	irgsp1_rep	CDS	17383	17474	.	+	0	Parent=Os01t0100500-01
Chr01	irgsp1_rep	CDS	17558	18258	.	+	1	Parent=Os01t0100500-01
Chr01	irgsp1_rep	CDS	18501	18571	.	+	2	Parent=Os01t0100500-01
Chr01	irgsp1_rep	CDS	18968	19057	.	+	0	Parent=Os01t0100500-01
Chr01	irgsp1_rep	CDS	19142	19321	.	+	0	Parent=Os01t0100500-01
Chr01	irgsp1_rep	CDS	19531	19593	.	+	0	Parent=Os01t0100500-01
Chr01	irgsp1_rep	three_prime_UTR	19594	19629	.	+	.	Parent=Os01t0100500-01
Chr01	irgsp1_rep	three_prime_UTR	19734	20144	.	+	.	Parent=Os01t0100500-01
Chr01	irgsp1_rep	mRNA	22841	26892	.	+	.	ID=Os01t0100600-01;Name=Os01t0100600-01;Locus_id=Os01g0100600;Note=Single-stranded nucleic acid binding R3H domain containing protein.;Transcript_evidence=AK121362 (DDBJ%2C Best hit);ORF_evidence=B9EYQ6 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Single-stranded nucleic acid binding R3H (IPR001374),SUZ domain (IPR024771);NIAS_FLcDNA=J023124E16;Expression=AK121362;TENOR=Os01t0100600-01;KEGG=Os01t0100600-01
Chr01	irgsp1_rep	five_prime_UTR	22841	23231	.	+	.	Parent=Os01t0100600-01
Chr01	irgsp1_rep	CDS	23232	23281	.	+	0	Parent=Os01t0100600-01
Chr01	irgsp1_rep	CDS	23572	23847	.	+	1	Parent=Os01t0100600-01
Chr01	irgsp1_rep	CDS	23962	24033	.	+	1	Parent=Os01t0100600-01
Chr01	irgsp1_rep	CDS	24492	24577	.	+	1	Parent=Os01t0100600-01
Chr01	irgsp1_rep	CDS	25445	25519	.	+	2	Parent=Os01t0100600-01
Chr01	irgsp1_rep	CDS	25883	26391	.	+	2	Parent=Os01t0100600-01
Chr01	irgsp1_rep	three_prime_UTR	26392	26892	.	+	.	Parent=Os01t0100600-01
Chr01	irgsp1_rep	mRNA	25861	26424	.	-	.	ID=Os01t0100650-00;Name=Os01t0100650-00;Locus_id=Os01g0100650;Note=Hypothetical gene.;Transcript_evidence=EU948781 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0100650-00;KEGG=Os01t0100650-00
Chr01	irgsp1_rep	five_prime_UTR	26424	26424	.	-	.	Parent=Os01t0100650-00
Chr01	irgsp1_rep	CDS	26040	26423	.	-	0	Parent=Os01t0100650-00
Chr01	irgsp1_rep	three_prime_UTR	25861	26039	.	-	.	Parent=Os01t0100650-00
Chr01	irgsp1_rep	mRNA	27143	28644	.	+	.	ID=Os01t0100700-01;Name=Os01t0100700-01;Locus_id=Os01g0100700;Oryzabase Gene Symbol Synonym(s)=RPS5;Oryzabase Gene Name Synonym(s)=ribosomal protein S5%2C ribosomal protein small subunit 5;Note=Similar to 40S ribosomal protein S5-1.;Transcript_evidence=AK121523 (DDBJ%2C Best hit),AK059844 (DDBJ%2C Best hit);ORF_evidence=B3TLN7 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: small ribosomal subunit (GO:0015935),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S7 (IPR000235),Ribosomal protein S7%2C eukaryotic/archaeal (IPR005716),Ribosomal protein S7%2C conserved site (IPR020606),Ribosomal protein S7 domain (IPR023798);NIAS_FLcDNA=J033028P14,006-206-E02;Oryzabase=22169;TENOR=Os01t0100700-01
Chr01	irgsp1_rep	five_prime_UTR	27143	27220	.	+	.	Parent=Os01t0100700-01
Chr01	irgsp1_rep	CDS	27221	27292	.	+	0	Parent=Os01t0100700-01
Chr01	irgsp1_rep	CDS	27370	27641	.	+	0	Parent=Os01t0100700-01
Chr01	irgsp1_rep	CDS	28090	28293	.	+	1	Parent=Os01t0100700-01
Chr01	irgsp1_rep	CDS	28365	28419	.	+	1	Parent=Os01t0100700-01
Chr01	irgsp1_rep	three_prime_UTR	28420	28644	.	+	.	Parent=Os01t0100700-01
Chr01	irgsp1_rep	mRNA	29818	34453	.	+	.	ID=Os01t0100800-01;Name=Os01t0100800-01;Locus_id=Os01g0100800;Note=Protein of unknown function DUF1664 family protein.;Transcript_evidence=AK122012 (DDBJ%2C Best hit);ORF_evidence=B8ACR5 (UniProt);InterPro=Protein of unknown function DUF1664 (IPR012458);NIAS_FLcDNA=J033111I18;Expression=AK122012;TENOR=Os01t0100800-01;KEGG=Os01t0100800-01
Chr01	irgsp1_rep	five_prime_UTR	29818	29939	.	+	.	Parent=Os01t0100800-01
Chr01	irgsp1_rep	CDS	29940	29976	.	+	0	Parent=Os01t0100800-01
Chr01	irgsp1_rep	CDS	30146	30228	.	+	2	Parent=Os01t0100800-01
Chr01	irgsp1_rep	CDS	30735	30806	.	+	0	Parent=Os01t0100800-01
Chr01	irgsp1_rep	CDS	30885	30963	.	+	0	Parent=Os01t0100800-01
Chr01	irgsp1_rep	CDS	31258	31325	.	+	2	Parent=Os01t0100800-01
Chr01	irgsp1_rep	CDS	31505	31606	.	+	0	Parent=Os01t0100800-01
Chr01	irgsp1_rep	CDS	32377	32466	.	+	0	Parent=Os01t0100800-01
Chr01	irgsp1_rep	CDS	32542	32616	.	+	0	Parent=Os01t0100800-01
Chr01	irgsp1_rep	CDS	32712	32744	.	+	0	Parent=Os01t0100800-01
Chr01	irgsp1_rep	CDS	32828	32905	.	+	0	Parent=Os01t0100800-01
Chr01	irgsp1_rep	CDS	33274	33330	.	+	0	Parent=Os01t0100800-01
Chr01	irgsp1_rep	CDS	33400	33471	.	+	0	Parent=Os01t0100800-01
Chr01	irgsp1_rep	CDS	33543	33617	.	+	0	Parent=Os01t0100800-01
Chr01	irgsp1_rep	CDS	33975	34124	.	+	0	Parent=Os01t0100800-01
Chr01	irgsp1_rep	three_prime_UTR	34125	34453	.	+	.	Parent=Os01t0100800-01
Chr01	irgsp1_rep	mRNA	35623	41136	.	+	.	ID=Os01t0100900-01;Name=Os01t0100900-01;Locus_id=Os01g0100900;RAP-DB Gene Symbol Synonym(s)=SPL1%2C OsSPL1;RAP-DB Gene Name Synonym(s)=SPHINGOSINE-1-PHOSPHATE LYASE 1%2C Sphingosine-1-Phoshpate Lyase 1;Oryzabase Gene Symbol Synonym(s)=OsSPL%2C OsSPL1;Oryzabase Gene Name Synonym(s)=Sphingosine-1-phosphate lyase%2C sphingosine-1-phosphate lyase 1;Note=Sphingosine-1-phosphate lyase%2C Disease resistance response;Transcript_evidence=AY972084,AK243573;ORF_evidence=Q52RG7,B7FAK6;GO=Biological Process: carboxylic acid metabolic process (GO:0019752),Molecular Function: catalytic activity (GO:0003824),Molecular Function: carboxy-lyase activity (GO:0016831),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent decarboxylase (IPR002129),Pyridoxal phosphate-dependent transferase (IPR015424),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421);NIAS_FLcDNA=J100082C01;Manual Curation=July 9%2C 2015;Literature_PMID=22889013;Oryzabase=15128;TENOR=Os01t0100900-01;KEGG=Os01t0100900-01 (EC:4.1.2.27)
Chr01	irgsp1_rep	five_prime_UTR	35623	35742	.	+	.	Parent=Os01t0100900-01
Chr01	irgsp1_rep	CDS	35743	35939	.	+	0	Parent=Os01t0100900-01
Chr01	irgsp1_rep	CDS	36027	36072	.	+	1	Parent=Os01t0100900-01
Chr01	irgsp1_rep	CDS	36517	36668	.	+	0	Parent=Os01t0100900-01
Chr01	irgsp1_rep	CDS	36818	36877	.	+	1	Parent=Os01t0100900-01
Chr01	irgsp1_rep	CDS	37594	37818	.	+	1	Parent=Os01t0100900-01
Chr01	irgsp1_rep	CDS	37892	38033	.	+	1	Parent=Os01t0100900-01
Chr01	irgsp1_rep	CDS	38276	38326	.	+	0	Parent=Os01t0100900-01
Chr01	irgsp1_rep	CDS	38434	38525	.	+	0	Parent=Os01t0100900-01
Chr01	irgsp1_rep	CDS	39319	39445	.	+	1	Parent=Os01t0100900-01
Chr01	irgsp1_rep	CDS	39553	39568	.	+	0	Parent=Os01t0100900-01
Chr01	irgsp1_rep	CDS	39939	40046	.	+	2	Parent=Os01t0100900-01
Chr01	irgsp1_rep	CDS	40135	40189	.	+	2	Parent=Os01t0100900-01
Chr01	irgsp1_rep	CDS	40456	40602	.	+	1	Parent=Os01t0100900-01
Chr01	irgsp1_rep	CDS	40703	40781	.	+	1	Parent=Os01t0100900-01
Chr01	irgsp1_rep	CDS	40885	41007	.	+	0	Parent=Os01t0100900-01
Chr01	irgsp1_rep	three_prime_UTR	41008	41136	.	+	.	Parent=Os01t0100900-01
Chr01	irgsp1_rep	mRNA	58658	61090	.	+	.	ID=Os01t0101150-00;Name=Os01t0101150-00;Locus_id=Os01g0101150;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7F2F8 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os01t0101150-00;KEGG=Os01t0101150-00
Chr01	irgsp1_rep	CDS	58658	61090	.	+	0	Parent=Os01t0101150-00
Chr01	irgsp1_rep	mRNA	60091	61086	.	-	.	ID=Os01t0101175-00;Name=Os01t0101175-00;Locus_id=Os01g0101175;Note=Non-protein coding transcript.;Transcript_evidence=BT084741 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0101175-00
Chr01	irgsp1_rep	exon	60091	61086	.	-	.	Parent=Os01t0101175-00
Chr01	irgsp1_rep	mRNA	62060	63576	.	+	.	ID=Os01t0101200-01;Name=Os01t0101200-01;Locus_id=Os01g0101200;Note=2%2C3-diketo-5-methylthio-1-phosphopentane phosphatase domain containing protein.;Transcript_evidence=AK067866 (DDBJ%2C Best hit),AK104517 (DDBJ%2C Best hit),AK104625 (DDBJ%2C Best hit),AK104752 (DDBJ%2C Best hit);ORF_evidence=NP_974931.1 (RefSeq);GO=Biological Process: L-methionine salvage from methylthioadenosine (GO:0019509),Molecular Function: acireductone synthase activity (GO:0043874),Molecular Function: metal ion binding (GO:0046872);InterPro=2%2C3-diketo-5-methylthio-1-phosphopentane phosphatase (IPR010041),HAD-like domain (IPR023214);NIAS_FLcDNA=J013127C12,006-303-C10,006-310-A09,001-038-F07;TENOR=Os01t0101200-01
Chr01	irgsp1_rep	five_prime_UTR	62060	62103	.	+	.	Parent=Os01t0101200-01
Chr01	irgsp1_rep	CDS	62104	62295	.	+	0	Parent=Os01t0101200-01
Chr01	irgsp1_rep	CDS	62385	62905	.	+	0	Parent=Os01t0101200-01
Chr01	irgsp1_rep	CDS	62996	63114	.	+	1	Parent=Os01t0101200-01
Chr01	irgsp1_rep	CDS	63248	63345	.	+	2	Parent=Os01t0101200-01
Chr01	irgsp1_rep	three_prime_UTR	63346	63576	.	+	.	Parent=Os01t0101200-01
Chr01	irgsp1_rep	mRNA	62112	65537	.	+	.	ID=Os01t0101200-02;Name=Os01t0101200-02;Locus_id=Os01g0101200;Note=2%2C3-diketo-5-methylthio-1-phosphopentane phosphatase domain containing protein.;Transcript_evidence=AK119457 (DDBJ%2C Best hit);ORF_evidence=Q7F2F8 (UniProt);GO=Biological Process: L-methionine salvage from methylthioadenosine (GO:0019509),Molecular Function: acireductone synthase activity (GO:0043874),Molecular Function: metal ion binding (GO:0046872);InterPro=2%2C3-diketo-5-methylthio-1-phosphopentane phosphatase (IPR010041),HAD-like domain (IPR023214);NIAS_FLcDNA=001-133-E05;Expression=AK119457;TENOR=Os01t0101200-02;KEGG=Os01t0101200-02 (EC:3.1.3.77)
Chr01	irgsp1_rep	five_prime_UTR	62112	62112	.	+	.	Parent=Os01t0101200-02
Chr01	irgsp1_rep	CDS	62113	62295	.	+	0	Parent=Os01t0101200-02
Chr01	irgsp1_rep	CDS	62385	62905	.	+	0	Parent=Os01t0101200-02
Chr01	irgsp1_rep	CDS	62996	63114	.	+	1	Parent=Os01t0101200-02
Chr01	irgsp1_rep	CDS	63248	63345	.	+	2	Parent=Os01t0101200-02
Chr01	irgsp1_rep	three_prime_UTR	63346	65537	.	+	.	Parent=Os01t0101200-02
Chr01	irgsp1_rep	mRNA	63350	66302	.	-	.	ID=Os01t0101300-01;Name=Os01t0101300-01;Locus_id=Os01g0101300;Note=Similar to MRNA%2C partial cds%2C clone: RAFL22-26-L17. (Fragment).;Transcript_evidence=AK287446 (DDBJ%2C Best hit);ORF_evidence=Q680Z5 (UniProt);NIAS_FLcDNA=J043016L21;TENOR=Os01t0101300-01;KEGG=Os01t0101300-01
Chr01	irgsp1_rep	five_prime_UTR	65951	66302	.	-	.	Parent=Os01t0101300-01
Chr01	irgsp1_rep	CDS	65628	65950	.	-	0	Parent=Os01t0101300-01
Chr01	irgsp1_rep	CDS	65248	65431	.	-	1	Parent=Os01t0101300-01
Chr01	irgsp1_rep	CDS	64902	65152	.	-	0	Parent=Os01t0101300-01
Chr01	irgsp1_rep	CDS	64665	64779	.	-	1	Parent=Os01t0101300-01
Chr01	irgsp1_rep	CDS	64339	64431	.	-	0	Parent=Os01t0101300-01
Chr01	irgsp1_rep	CDS	63877	64020	.	-	0	Parent=Os01t0101300-01
Chr01	irgsp1_rep	CDS	63670	63783	.	-	0	Parent=Os01t0101300-01
Chr01	irgsp1_rep	three_prime_UTR	63350	63669	.	-	.	Parent=Os01t0101300-01
Chr01	irgsp1_rep	mRNA	72816	78349	.	+	.	ID=Os01t0101600-01;Name=Os01t0101600-01;Locus_id=Os01g0101600;Note=Immunoglobulin-like fold domain containing protein.;Transcript_evidence=AK099952 (DDBJ%2C Best hit);ORF_evidence=Q7F2F5 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA recognition motif domain (IPR000504),Zinc finger%2C CCCH-type (IPR000571),Filamin/ABP280 repeat (IPR001298),Nucleotide-binding%2C alpha-beta plait (IPR012677),Immunoglobulin-like fold (IPR013783),Immunoglobulin E-set (IPR014756),Filamin/ABP280 repeat-like (IPR017868);NIAS_FLcDNA=J013123J12;Expression=AK099952;TENOR=Os01t0101600-01;KEGG=Os01t0101600-01
Chr01	irgsp1_rep	five_prime_UTR	72816	72902	.	+	.	Parent=Os01t0101600-01
Chr01	irgsp1_rep	CDS	72903	73935	.	+	0	Parent=Os01t0101600-01
Chr01	irgsp1_rep	CDS	74468	74981	.	+	2	Parent=Os01t0101600-01
Chr01	irgsp1_rep	CDS	75619	77008	.	+	1	Parent=Os01t0101600-01
Chr01	irgsp1_rep	three_prime_UTR	77009	77205	.	+	.	Parent=Os01t0101600-01
Chr01	irgsp1_rep	three_prime_UTR	77333	78349	.	+	.	Parent=Os01t0101600-01
Chr01	irgsp1_rep	mRNA	72823	77699	.	+	.	ID=Os01t0101600-02;Name=Os01t0101600-02;Locus_id=Os01g0101600;Note=Immunoglobulin-like fold domain containing protein.;Transcript_evidence=AK122118 (DDBJ%2C Best hit);ORF_evidence=Q7F2F5 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA recognition motif domain (IPR000504),Zinc finger%2C CCCH-type (IPR000571),Filamin/ABP280 repeat (IPR001298),Nucleotide-binding%2C alpha-beta plait (IPR012677),Immunoglobulin-like fold (IPR013783),Immunoglobulin E-set (IPR014756),Filamin/ABP280 repeat-like (IPR017868);NIAS_FLcDNA=J033128C08;Expression=AK122118;TENOR=Os01t0101600-02;KEGG=Os01t0101600-02
Chr01	irgsp1_rep	five_prime_UTR	72823	72902	.	+	.	Parent=Os01t0101600-02
Chr01	irgsp1_rep	CDS	72903	73935	.	+	0	Parent=Os01t0101600-02
Chr01	irgsp1_rep	CDS	74468	74981	.	+	2	Parent=Os01t0101600-02
Chr01	irgsp1_rep	CDS	75619	77008	.	+	1	Parent=Os01t0101600-02
Chr01	irgsp1_rep	three_prime_UTR	77009	77699	.	+	.	Parent=Os01t0101600-02
Chr01	irgsp1_rep	mRNA	75942	77699	.	+	.	ID=Os01t0101600-03;Name=Os01t0101600-03;Locus_id=Os01g0101600;Note=Hypothetical conserved gene.;Transcript_evidence=AK103820 (DDBJ%2C Best hit);ORF_evidence=Q7F2F5 (UniProt);NIAS_FLcDNA=J033147H07;Expression=AK103820;TENOR=Os01t0101600-03;KEGG=Os01t0101600-03
Chr01	irgsp1_rep	five_prime_UTR	75942	75943	.	+	.	Parent=Os01t0101600-03
Chr01	irgsp1_rep	CDS	75944	77008	.	+	0	Parent=Os01t0101600-03
Chr01	irgsp1_rep	three_prime_UTR	77009	77699	.	+	.	Parent=Os01t0101600-03
Chr01	irgsp1_rep	mRNA	82426	84095	.	+	.	ID=Os01t0101700-00;Name=Os01t0101700-00;Locus_id=Os01g0101700;Oryzabase Gene Symbol Synonym(s)=OsDjC1;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C1%2C rice DJC26 homolog;Note=Similar to chaperone protein dnaJ 20.;Transcript_evidence=FP098445 (DDBJ);ORF_evidence=NP_001151671.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Heat shock protein DnaJ%2C conserved site (IPR018253);Oryzabase=12158;TENOR=Os01t0101700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	82426	82506	.	+	.	Parent=Os01t0101700-00
Chr01	irgsp1_rep	CDS	82507	82932	.	+	0	Parent=Os01t0101700-00
Chr01	irgsp1_rep	CDS	83724	83864	.	+	0	Parent=Os01t0101700-00
Chr01	irgsp1_rep	three_prime_UTR	83865	84095	.	+	.	Parent=Os01t0101700-00
Chr01	irgsp1_rep	mRNA	85337	88844	.	+	.	ID=Os01t0101800-01;Name=Os01t0101800-01;Locus_id=Os01g0101800;Note=Conserved hypothetical protein.;Transcript_evidence=AK103498 (DDBJ%2C Best hit);ORF_evidence=B8ACS0 (UniProt);NIAS_FLcDNA=J033131A17;Expression=AK103498;TENOR=Os01t0101800-01;KEGG=Os01t0101800-01
Chr01	irgsp1_rep	five_prime_UTR	85337	85378	.	+	.	Parent=Os01t0101800-01
Chr01	irgsp1_rep	CDS	85379	85600	.	+	0	Parent=Os01t0101800-01
Chr01	irgsp1_rep	CDS	85737	85830	.	+	0	Parent=Os01t0101800-01
Chr01	irgsp1_rep	CDS	85935	86086	.	+	2	Parent=Os01t0101800-01
Chr01	irgsp1_rep	CDS	86212	86299	.	+	0	Parent=Os01t0101800-01
Chr01	irgsp1_rep	CDS	86399	87681	.	+	2	Parent=Os01t0101800-01
Chr01	irgsp1_rep	CDS	88291	88398	.	+	0	Parent=Os01t0101800-01
Chr01	irgsp1_rep	CDS	88500	88583	.	+	0	Parent=Os01t0101800-01
Chr01	irgsp1_rep	three_prime_UTR	88584	88844	.	+	.	Parent=Os01t0101800-01
Chr01	irgsp1_rep	mRNA	86211	88583	.	-	.	ID=Os01t0101850-00;Name=Os01t0101850-00;Locus_id=Os01g0101850;Note=Hypothetical protein.;Transcript_evidence=tplb0054b05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0101850-00
Chr01	irgsp1_rep	five_prime_UTR	88496	88583	.	-	.	Parent=Os01t0101850-00
Chr01	irgsp1_rep	five_prime_UTR	88308	88396	.	-	.	Parent=Os01t0101850-00
Chr01	irgsp1_rep	five_prime_UTR	87663	87694	.	-	.	Parent=Os01t0101850-00
Chr01	irgsp1_rep	CDS	87327	87662	.	-	0	Parent=Os01t0101850-00
Chr01	irgsp1_rep	three_prime_UTR	86384	87326	.	-	.	Parent=Os01t0101850-00
Chr01	irgsp1_rep	three_prime_UTR	86211	86277	.	-	.	Parent=Os01t0101850-00
Chr01	irgsp1_rep	mRNA	88883	89228	.	-	.	ID=Os01t0101900-00;Name=Os01t0101900-00;Locus_id=Os01g0101900;Note=Similar to OSIGBa0075F02.3 protein.;Transcript_evidence=AK333373 (DDBJ);ORF_evidence=Q01LF6 (UniProt);InterPro=Protein of unknown function DUF3339 (IPR021775);TENOR=Os01t0101900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	89205	89228	.	-	.	Parent=Os01t0101900-00
Chr01	irgsp1_rep	CDS	88986	89204	.	-	0	Parent=Os01t0101900-00
Chr01	irgsp1_rep	three_prime_UTR	88883	88985	.	-	.	Parent=Os01t0101900-00
Chr01	irgsp1_rep	mRNA	89763	91465	.	-	.	ID=Os01t0102000-01;Name=Os01t0102000-01;Locus_id=Os01g0102000;CGSNL Gene Symbol=NPC5;CGSNL Gene Name=NON-SPECIFIC PHOSPHOLIPASE C5;Oryzabase Gene Symbol Synonym(s)=OsNPC6%2C OsNPC5%2C NPC6;Oryzabase Gene Name Synonym(s)=Non-specific phospholipase C5;Note=Phosphoesterase family protein.;Transcript_evidence=AK101065 (DDBJ%2C Best hit);ORF_evidence=NP_190430.2 (RefSeq);GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Phosphoesterase (IPR007312);NIAS_FLcDNA=J033023E01;Oryzabase=21052;Expression=AK101065;TENOR=Os01t0102000-01;KEGG=Os01t0102000-01
Chr01	irgsp1_rep	five_prime_UTR	91412	91465	.	-	.	Parent=Os01t0102000-01
Chr01	irgsp1_rep	CDS	89825	91411	.	-	0	Parent=Os01t0102000-01
Chr01	irgsp1_rep	three_prime_UTR	89763	89824	.	-	.	Parent=Os01t0102000-01
Chr01	irgsp1_rep	mRNA	134300	135439	.	+	.	ID=Os01t0102300-01;Name=Os01t0102300-01;Locus_id=Os01g0102300;RAP-DB Gene Symbol Synonym(s)=OsTLP27;CGSNL Gene Symbol=TLP27;CGSNL Gene Name=THYLAKOID LUMENAL PROTEIN 27;Oryzabase Gene Symbol Synonym(s)=OsTLP27;Oryzabase Gene Name Synonym(s)=Thylakoid lumenal protein 27;Note=Thylakoid lumen protein%2C Photosynthesis and chloroplast development;Transcript_evidence=AK067320;ORF_evidence=Q94CX1;NIAS_FLcDNA=J013106P10;Manual Curation=March 7%2C 2017;Literature_PMID=22921006;Oryzabase=22606;Expression=AK067320;TENOR=Os01t0102300-01;KEGG=Os01t0102300-01;Subcellular location=chloroplast (GO:0009507)
Chr01	irgsp1_rep	five_prime_UTR	134300	134310	.	+	.	Parent=Os01t0102300-01
Chr01	irgsp1_rep	CDS	134311	134615	.	+	0	Parent=Os01t0102300-01
Chr01	irgsp1_rep	CDS	134698	134824	.	+	1	Parent=Os01t0102300-01
Chr01	irgsp1_rep	CDS	134912	135253	.	+	0	Parent=Os01t0102300-01
Chr01	irgsp1_rep	three_prime_UTR	135254	135439	.	+	.	Parent=Os01t0102300-01
Chr01	irgsp1_rep	mRNA	139826	141555	.	+	.	ID=Os01t0102400-01;Name=Os01t0102400-01;Locus_id=Os01g0102400;CGSNL Gene Symbol=HAP5H;CGSNL Gene Name=HAP5H SUBUNIT OF CCAAT-BOX BINDING COMPLEX;Oryzabase Gene Symbol Synonym(s)=OsHAP5H%2C OsNF-YC9%2C NF-YC9%2C NFYC9;Oryzabase Gene Name Synonym(s)=NUCLEAR FACTOR-Y subunit C9%2C NUCLEAR FACTOR-Y subunit NF-YC9%2C NF-YC transcription factor 9%2C NF-YC subunit 9%2C NF-YC family 9;Note=Histone-fold domain containing protein.;Transcript_evidence=AK242226 (DDBJ%2C Best hit);ORF_evidence=NP_001041748.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Transcription factor CBF/NF-Y/archaeal histone (IPR003958),Histone-fold (IPR009072);NIAS_FLcDNA=J075175B02;Oryzabase=20924;TENOR=Os01t0102400-01;KEGG=Os01t0102400-01
Chr01	irgsp1_rep	five_prime_UTR	139826	139906	.	+	.	Parent=Os01t0102400-01
Chr01	irgsp1_rep	five_prime_UTR	140120	140149	.	+	.	Parent=Os01t0102400-01
Chr01	irgsp1_rep	CDS	140150	141415	.	+	0	Parent=Os01t0102400-01
Chr01	irgsp1_rep	three_prime_UTR	141416	141555	.	+	.	Parent=Os01t0102400-01
Chr01	irgsp1_rep	mRNA	141959	144554	.	+	.	ID=Os01t0102500-01;Name=Os01t0102500-01;Locus_id=Os01g0102500;Note=Conserved hypothetical protein.;Transcript_evidence=AK100002 (DDBJ%2C Best hit);ORF_evidence=B8ACS1 (UniProt);NIAS_FLcDNA=J013135E13;Expression=AK100002;TENOR=Os01t0102500-01;KEGG=Os01t0102500-01
Chr01	irgsp1_rep	five_prime_UTR	141959	142083	.	+	.	Parent=Os01t0102500-01
Chr01	irgsp1_rep	CDS	142084	142631	.	+	0	Parent=Os01t0102500-01
Chr01	irgsp1_rep	CDS	143191	143431	.	+	1	Parent=Os01t0102500-01
Chr01	irgsp1_rep	CDS	143563	143680	.	+	0	Parent=Os01t0102500-01
Chr01	irgsp1_rep	CDS	143817	143908	.	+	2	Parent=Os01t0102500-01
Chr01	irgsp1_rep	three_prime_UTR	143909	144554	.	+	.	Parent=Os01t0102500-01
Chr01	irgsp1_rep	mRNA	145603	147847	.	+	.	ID=Os01t0102600-01;Name=Os01t0102600-01;Locus_id=Os01g0102600;Oryzabase Gene Symbol Synonym(s)=OsSK4%2C OsSKL1;Oryzabase Gene Name Synonym(s)=Shikimate kinase 4;Note=Shikimate kinase domain containing protein.;Transcript_evidence=AK064812 (DDBJ%2C Best hit);ORF_evidence=NP_001150361.1 (RefSeq);GO=Molecular Function: shikimate kinase activity (GO:0004765),Molecular Function: ATP binding (GO:0005524);InterPro=Shikimate kinase (IPR000623);NIAS_FLcDNA=J013000E05;Oryzabase=11366;Expression=AK064812;TENOR=Os01t0102600-01;KEGG=Os01t0102600-01
Chr01	irgsp1_rep	five_prime_UTR	145603	145644	.	+	.	Parent=Os01t0102600-01
Chr01	irgsp1_rep	CDS	145645	145786	.	+	0	Parent=Os01t0102600-01
Chr01	irgsp1_rep	CDS	145905	145951	.	+	2	Parent=Os01t0102600-01
Chr01	irgsp1_rep	CDS	146028	146082	.	+	0	Parent=Os01t0102600-01
Chr01	irgsp1_rep	CDS	146179	146339	.	+	2	Parent=Os01t0102600-01
Chr01	irgsp1_rep	CDS	146450	146532	.	+	0	Parent=Os01t0102600-01
Chr01	irgsp1_rep	CDS	146611	146719	.	+	1	Parent=Os01t0102600-01
Chr01	irgsp1_rep	CDS	147106	147184	.	+	0	Parent=Os01t0102600-01
Chr01	irgsp1_rep	CDS	147311	147375	.	+	2	Parent=Os01t0102600-01
Chr01	irgsp1_rep	CDS	147507	147575	.	+	0	Parent=Os01t0102600-01
Chr01	irgsp1_rep	three_prime_UTR	147576	147847	.	+	.	Parent=Os01t0102600-01
Chr01	irgsp1_rep	mRNA	147104	147805	.	+	.	ID=Os01t0102600-02;Name=Os01t0102600-02;Locus_id=Os01g0102600;Oryzabase Gene Symbol Synonym(s)=OsSK4%2C OsSKL1;Oryzabase Gene Name Synonym(s)=Shikimate kinase 4;Note=Similar to shikimate kinase family protein.;Transcript_evidence=AK062086 (DDBJ%2C Best hit);ORF_evidence=NP_001150361.1 (RefSeq);NIAS_FLcDNA=001-044-G05;Oryzabase=11366;Expression=AK062086;TENOR=Os01t0102600-02;KEGG=Os01t0102600-02
Chr01	irgsp1_rep	five_prime_UTR	147104	147105	.	+	.	Parent=Os01t0102600-02
Chr01	irgsp1_rep	CDS	147106	147184	.	+	0	Parent=Os01t0102600-02
Chr01	irgsp1_rep	CDS	147311	147375	.	+	2	Parent=Os01t0102600-02
Chr01	irgsp1_rep	CDS	147507	147575	.	+	0	Parent=Os01t0102600-02
Chr01	irgsp1_rep	three_prime_UTR	147576	147805	.	+	.	Parent=Os01t0102600-02
Chr01	irgsp1_rep	mRNA	148085	150568	.	+	.	ID=Os01t0102700-01;Name=Os01t0102700-01;Locus_id=Os01g0102700;Note=Translocon-associated beta family protein.;Transcript_evidence=AK063774 (DDBJ%2C Best hit),AK099081 (DDBJ%2C Best hit),AK099360 (DDBJ%2C Best hit);ORF_evidence=B7ENG6 (UniProt);GO=Cellular Component: endoplasmic reticulum (GO:0005783),Cellular Component: integral to membrane (GO:0016021);InterPro=Translocon-associated beta (IPR008856);NIAS_FLcDNA=001-121-C11,J023002L13,J033046F10;TENOR=Os01t0102700-01
Chr01	irgsp1_rep	five_prime_UTR	148085	148146	.	+	.	Parent=Os01t0102700-01
Chr01	irgsp1_rep	CDS	148147	148313	.	+	0	Parent=Os01t0102700-01
Chr01	irgsp1_rep	CDS	149450	149548	.	+	1	Parent=Os01t0102700-01
Chr01	irgsp1_rep	CDS	149634	149742	.	+	1	Parent=Os01t0102700-01
Chr01	irgsp1_rep	CDS	149856	149931	.	+	0	Parent=Os01t0102700-01
Chr01	irgsp1_rep	CDS	150152	150318	.	+	2	Parent=Os01t0102700-01
Chr01	irgsp1_rep	three_prime_UTR	150319	150568	.	+	.	Parent=Os01t0102700-01
Chr01	irgsp1_rep	mRNA	152853	156449	.	+	.	ID=Os01t0102800-01;Name=Os01t0102800-01;Locus_id=Os01g0102800;Oryzabase Gene Symbol Synonym(s)=CSB%2C OsCBS;Oryzabase Gene Name Synonym(s)=Cockayne syndrome WD-repeat protein;Note=Similar to Chromatin remodeling complex subunit.;Transcript_evidence=AK064456 (DDBJ%2C Best hit);ORF_evidence=XP_002307656.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524);InterPro=SNF2-related (IPR000330),Helicase%2C C-terminal (IPR001650),DEAD-like helicase (IPR014001);NIAS_FLcDNA=002-110-F11;Oryzabase=18092;Expression=AK064456;TENOR=Os01t0102800-01;KEGG=Os01t0102800-01
Chr01	irgsp1_rep	five_prime_UTR	152853	152853	.	+	.	Parent=Os01t0102800-01
Chr01	irgsp1_rep	CDS	152854	153025	.	+	0	Parent=Os01t0102800-01
Chr01	irgsp1_rep	CDS	153178	154646	.	+	2	Parent=Os01t0102800-01
Chr01	irgsp1_rep	CDS	155010	155450	.	+	0	Parent=Os01t0102800-01
Chr01	irgsp1_rep	CDS	155543	156214	.	+	0	Parent=Os01t0102800-01
Chr01	irgsp1_rep	three_prime_UTR	156215	156449	.	+	.	Parent=Os01t0102800-01
Chr01	irgsp1_rep	mRNA	164577	168921	.	+	.	ID=Os01t0102850-00;Name=Os01t0102850-00;Locus_id=Os01g0102850;Note=Similar to nitrilase 2.;Transcript_evidence=FP097470 (DDBJ);ORF_evidence=NP_001105196.1 (RefSeq);TENOR=Os01t0102850-00
Chr01	irgsp1_rep	five_prime_UTR	164577	164905	.	+	.	Parent=Os01t0102850-00
Chr01	irgsp1_rep	five_prime_UTR	168499	168804	.	+	.	Parent=Os01t0102850-00
Chr01	irgsp1_rep	CDS	168805	168921	.	+	0	Parent=Os01t0102850-00
Chr01	irgsp1_rep	mRNA	169390	170316	.	-	.	ID=Os01t0102900-01;Name=Os01t0102900-01;Locus_id=Os01g0102900;RAP-DB Gene Symbol Synonym(s)=LIR1%2C Lir1;RAP-DB Gene Name Synonym(s)=LIGHT-REGULATED GENE 1%2C light-regulated gene 1%2C LIGHT-INDUCED RICE1;CGSNL Gene Symbol=LIR1;CGSNL Gene Name=LIGHT-REGULATED GENE 1;Oryzabase Gene Symbol Synonym(s)=Lir1%2C OsLIR1%2C Os-LIR1;Oryzabase Gene Name Synonym(s)=light-regulated gene 1%2C LIGHT-INDUCED RICE1%2C LIGHT-INDUCED RICE 1;Note=Light-regulated protein%2C Regulation of light-dependent attachment of LEAF-TYPE FERREDOXIN-NADP+ OXIDOREDUCTASE (LFNR) to the thylakoid membrane;Transcript_evidence=X68807 (Nohrin),AK120535,AK067670;ORF_evidence=Q03200;InterPro=Light regulated Lir1 (IPR009856);NIAS_FLcDNA=J013128K04, J013120E23;Manual Curation=April 20%2C 2016;Literature_PMID=26941088,8499615;Oryzabase=14464;Expression=AK120535;TENOR=Os01t0102900-01;KEGG=Os01t0102900-01
Chr01	irgsp1_rep	five_prime_UTR	170261	170316	.	-	.	Parent=Os01t0102900-01
Chr01	irgsp1_rep	CDS	170091	170260	.	-	0	Parent=Os01t0102900-01
Chr01	irgsp1_rep	CDS	169751	169909	.	-	1	Parent=Os01t0102900-01
Chr01	irgsp1_rep	CDS	169599	169656	.	-	1	Parent=Os01t0102900-01
Chr01	irgsp1_rep	three_prime_UTR	169390	169598	.	-	.	Parent=Os01t0102900-01
Chr01	irgsp1_rep	mRNA	170798	173144	.	-	.	ID=Os01t0103000-01;Name=Os01t0103000-01;Locus_id=Os01g0103000;Note=Snf7 family protein.;Transcript_evidence=AK108287 (DDBJ%2C Best hit);ORF_evidence=B6TYU1 (UniProt);GO=Biological Process: protein transport (GO:0015031);InterPro=Snf7 (IPR005024);NIAS_FLcDNA=002-141-D09;Expression=AK108287;TENOR=Os01t0103000-01;KEGG=Os01t0103000-01
Chr01	irgsp1_rep	five_prime_UTR	173073	173144	.	-	.	Parent=Os01t0103000-01
Chr01	irgsp1_rep	CDS	173004	173072	.	-	0	Parent=Os01t0103000-01
Chr01	irgsp1_rep	CDS	172770	172921	.	-	0	Parent=Os01t0103000-01
Chr01	irgsp1_rep	CDS	172578	172671	.	-	1	Parent=Os01t0103000-01
Chr01	irgsp1_rep	CDS	172398	172469	.	-	0	Parent=Os01t0103000-01
Chr01	irgsp1_rep	CDS	171764	171875	.	-	0	Parent=Os01t0103000-01
Chr01	irgsp1_rep	CDS	171406	171554	.	-	2	Parent=Os01t0103000-01
Chr01	irgsp1_rep	CDS	171045	171095	.	-	0	Parent=Os01t0103000-01
Chr01	irgsp1_rep	three_prime_UTR	170798	171044	.	-	.	Parent=Os01t0103000-01
Chr01	irgsp1_rep	mRNA	172587	175073	.	+	.	ID=Os01t0103050-01;Name=Os01t0103050-01;Locus_id=Os01g0103050;Note=Non-protein coding transcript.;Transcript_evidence=AK066123 (DDBJ%2C Best hit),AK068676 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013055A22,J013158I15;TENOR=Os01t0103050-01
Chr01	irgsp1_rep	exon	172587	175073	.	+	.	Parent=Os01t0103050-01
Chr01	irgsp1_rep	mRNA	178815	180433	.	-	.	ID=Os01t0103075-00;Name=Os01t0103075-00;Locus_id=Os01g0103075;Note=Hypothetical protein.;Transcript_evidence=tplb0038k08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0103075-00
Chr01	irgsp1_rep	five_prime_UTR	180055	180433	.	-	.	Parent=Os01t0103075-00
Chr01	irgsp1_rep	CDS	179512	180054	.	-	0	Parent=Os01t0103075-00
Chr01	irgsp1_rep	three_prime_UTR	178815	179511	.	-	.	Parent=Os01t0103075-00
Chr01	irgsp1_rep	mRNA	178607	180548	.	+	.	ID=Os01t0103100-01;Name=Os01t0103100-01;Locus_id=Os01g0103100;RAP-DB Gene Symbol Synonym(s)=OsNPF6.1;CGSNL Gene Symbol=NPF6.1;CGSNL Gene Name=NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 6.1;Oryzabase Gene Symbol Synonym(s)=OsNPF6.1;Oryzabase Gene Name Synonym(s)=NRT1/PTR family protein 6.1;Note=Nitrate transporter%2C Regulation of nitrogen use efficiency (NUE);Transcript_evidence=AK070557;ORF_evidence=Q9FTZ3;GO=Biological Process: oligopeptide transport (GO:0006857),Biological Process: transmembrane transport (GO:0055085),Molecular Function: transmembrane transporter activity (GO:0022857),Cellular Component: membrane (GO:0016020);InterPro=MFS transporter superfamily (IPR036259),Proton-dependent oligopeptide transporter family (IPR000109),PTR2 family proton/oligopeptide symporter%2C conserved site (IPR018456);NIAS_FLcDNA=J023061L16;Manual Curation=December 11%2C 2019;Literature_PMID=31754193;Oryzabase=23441;Expression=AK070557;TENOR=Os01t0103100-01;KEGG=Os01t0103100-01;Subcellular location=plasma membrane (GO:0005886)
Chr01	irgsp1_rep	five_prime_UTR	178607	178641	.	+	.	Parent=Os01t0103100-01
Chr01	irgsp1_rep	CDS	178642	180462	.	+	0	Parent=Os01t0103100-01
Chr01	irgsp1_rep	three_prime_UTR	180463	180548	.	+	.	Parent=Os01t0103100-01
Chr01	irgsp1_rep	mRNA	178652	180575	.	+	.	ID=Os01t0103100-02;Name=Os01t0103100-02;Locus_id=Os01g0103100;CGSNL Gene Symbol=NPF6.1;CGSNL Gene Name=NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 6.1;Oryzabase Gene Symbol Synonym(s)=OsNPF6.1;Oryzabase Gene Name Synonym(s)=NRT1/PTR family protein 6.1;Note=Similar to predicted protein.;Transcript_evidence=AK058723 (DDBJ%2C Best hit);ORF_evidence=XP_002873609.1 (RefSeq);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),PTR2 family proton/oligopeptide symporter%2C conserved site (IPR018456);NIAS_FLcDNA=001-019-E11;Oryzabase=23441;Expression=AK058723;TENOR=Os01t0103100-02;KEGG=Os01t0103100-02
Chr01	irgsp1_rep	five_prime_UTR	178652	178677	.	+	.	Parent=Os01t0103100-02
Chr01	irgsp1_rep	CDS	178678	180462	.	+	0	Parent=Os01t0103100-02
Chr01	irgsp1_rep	three_prime_UTR	180463	180575	.	+	.	Parent=Os01t0103100-02
Chr01	irgsp1_rep	mRNA	185189	185828	.	-	.	ID=Os01t0103400-01;Name=Os01t0103400-01;Locus_id=Os01g0103400;Note=Hypothetical gene.;Transcript_evidence=AK109199 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-156-B12;Expression=AK109199;TENOR=Os01t0103400-01;KEGG=Os01t0103400-01
Chr01	irgsp1_rep	five_prime_UTR	185828	185828	.	-	.	Parent=Os01t0103400-01
Chr01	irgsp1_rep	CDS	185435	185827	.	-	0	Parent=Os01t0103400-01
Chr01	irgsp1_rep	three_prime_UTR	185189	185434	.	-	.	Parent=Os01t0103400-01
Chr01	irgsp1_rep	mRNA	187345	190904	.	-	.	ID=Os01t0103600-01;Name=Os01t0103600-01;Locus_id=Os01g0103600;Note=Similar to sterol-8%2C7-isomerase.;Transcript_evidence=AK102848 (DDBJ%2C Best hit);ORF_evidence=NP_001105846.1 (RefSeq);GO=Biological Process: sterol metabolic process (GO:0016125),Cellular Component: endoplasmic reticulum (GO:0005783),Cellular Component: integral to membrane (GO:0016021),Molecular Function: cholestenol delta-isomerase activity (GO:0047750);InterPro=Emopamil-binding (IPR007905);NIAS_FLcDNA=J033110C04;Expression=AK102848;TENOR=Os01t0103600-01;KEGG=Os01t0103600-01 (EC:5.3.3.5)
Chr01	irgsp1_rep	five_prime_UTR	190232	190904	.	-	.	Parent=Os01t0103600-01
Chr01	irgsp1_rep	CDS	190087	190231	.	-	0	Parent=Os01t0103600-01
Chr01	irgsp1_rep	CDS	189841	189990	.	-	2	Parent=Os01t0103600-01
Chr01	irgsp1_rep	CDS	189396	189715	.	-	2	Parent=Os01t0103600-01
Chr01	irgsp1_rep	three_prime_UTR	187345	189395	.	-	.	Parent=Os01t0103600-01
Chr01	irgsp1_rep	mRNA	186250	190262	.	-	.	ID=Os01t0103600-02;Name=Os01t0103600-02;Locus_id=Os01g0103600;Note=Emopamil-binding family protein.;Transcript_evidence=AK059848 (DDBJ%2C Best hit);ORF_evidence=B6TIR9 (UniProt);GO=Biological Process: sterol metabolic process (GO:0016125),Cellular Component: endoplasmic reticulum (GO:0005783),Cellular Component: integral to membrane (GO:0016021),Molecular Function: cholestenol delta-isomerase activity (GO:0047750);InterPro=Emopamil-binding (IPR007905);NIAS_FLcDNA=006-206-F06;Expression=AK059848;TENOR=Os01t0103600-02;KEGG=Os01t0103600-02 (EC:5.3.3.5)
Chr01	irgsp1_rep	five_prime_UTR	190232	190262	.	-	.	Parent=Os01t0103600-02
Chr01	irgsp1_rep	CDS	190087	190231	.	-	0	Parent=Os01t0103600-02
Chr01	irgsp1_rep	CDS	189841	189990	.	-	2	Parent=Os01t0103600-02
Chr01	irgsp1_rep	CDS	189607	189715	.	-	2	Parent=Os01t0103600-02
Chr01	irgsp1_rep	CDS	186516	186771	.	-	1	Parent=Os01t0103600-02
Chr01	irgsp1_rep	three_prime_UTR	186250	186515	.	-	.	Parent=Os01t0103600-02
Chr01	irgsp1_rep	mRNA	187545	188586	.	+	.	ID=Os01t0103650-00;Name=Os01t0103650-00;Locus_id=Os01g0103650;Note=Hypothetical gene.;Transcript_evidence=AK242117 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;TENOR=Os01t0103650-00;KEGG=Os01t0103650-00
Chr01	irgsp1_rep	five_prime_UTR	187545	187546	.	+	.	Parent=Os01t0103650-00
Chr01	irgsp1_rep	CDS	187547	187768	.	+	0	Parent=Os01t0103650-00
Chr01	irgsp1_rep	three_prime_UTR	187769	188020	.	+	.	Parent=Os01t0103650-00
Chr01	irgsp1_rep	three_prime_UTR	188060	188385	.	+	.	Parent=Os01t0103650-00
Chr01	irgsp1_rep	three_prime_UTR	188455	188586	.	+	.	Parent=Os01t0103650-00
Chr01	irgsp1_rep	mRNA	191037	196287	.	+	.	ID=Os01t0103700-01;Name=Os01t0103700-01;Locus_id=Os01g0103700;Note=Conserved hypothetical protein.;Transcript_evidence=AK070525 (DDBJ%2C Best hit);ORF_evidence=B9ETK1 (UniProt);NIAS_FLcDNA=J023061E16;TENOR=Os01t0103700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	191037	191161	.	+	.	Parent=Os01t0103700-01
Chr01	irgsp1_rep	five_prime_UTR	191625	191693	.	+	.	Parent=Os01t0103700-01
Chr01	irgsp1_rep	CDS	191694	191705	.	+	0	Parent=Os01t0103700-01
Chr01	irgsp1_rep	CDS	192399	192506	.	+	0	Parent=Os01t0103700-01
Chr01	irgsp1_rep	CDS	192958	193161	.	+	0	Parent=Os01t0103700-01
Chr01	irgsp1_rep	CDS	193248	193356	.	+	0	Parent=Os01t0103700-01
Chr01	irgsp1_rep	CDS	193434	193507	.	+	2	Parent=Os01t0103700-01
Chr01	irgsp1_rep	three_prime_UTR	193508	196287	.	+	.	Parent=Os01t0103700-01
Chr01	irgsp1_rep	mRNA	197647	200803	.	+	.	ID=Os01t0103800-01;Name=Os01t0103800-01;Locus_id=Os01g0103800;Oryzabase Gene Symbol Synonym(s)=OsDW1-01g;Note=Conserved hypothetical protein.;Transcript_evidence=AK102782 (DDBJ%2C Best hit);ORF_evidence=A2WJN5 (UniProt);NIAS_FLcDNA=J033107K12;Oryzabase=21687;Expression=AK102782;TENOR=Os01t0103800-01;KEGG=Os01t0103800-01
Chr01	irgsp1_rep	five_prime_UTR	197647	197838	.	+	.	Parent=Os01t0103800-01
Chr01	irgsp1_rep	five_prime_UTR	198034	198129	.	+	.	Parent=Os01t0103800-01
Chr01	irgsp1_rep	CDS	198130	198225	.	+	0	Parent=Os01t0103800-01
Chr01	irgsp1_rep	CDS	198830	200036	.	+	0	Parent=Os01t0103800-01
Chr01	irgsp1_rep	CDS	200253	200479	.	+	2	Parent=Os01t0103800-01
Chr01	irgsp1_rep	three_prime_UTR	200480	200803	.	+	.	Parent=Os01t0103800-01
Chr01	irgsp1_rep	mRNA	201944	206202	.	+	.	ID=Os01t0103900-01;Name=Os01t0103900-01;Locus_id=Os01g0103900;Note=Polynucleotidyl transferase%2C Ribonuclease H fold domain containing protein.;Transcript_evidence=AK069975 (DDBJ%2C Best hit);ORF_evidence=B9EYR9 (UniProt);NIAS_FLcDNA=J023037J01;Expression=AK069975;TENOR=Os01t0103900-01;KEGG=Os01t0103900-01
Chr01	irgsp1_rep	five_prime_UTR	201944	202041	.	+	.	Parent=Os01t0103900-01
Chr01	irgsp1_rep	CDS	202042	202110	.	+	0	Parent=Os01t0103900-01
Chr01	irgsp1_rep	CDS	202252	202359	.	+	0	Parent=Os01t0103900-01
Chr01	irgsp1_rep	CDS	203007	203127	.	+	0	Parent=Os01t0103900-01
Chr01	irgsp1_rep	CDS	203302	203429	.	+	2	Parent=Os01t0103900-01
Chr01	irgsp1_rep	CDS	203511	203658	.	+	0	Parent=Os01t0103900-01
Chr01	irgsp1_rep	CDS	203760	203938	.	+	2	Parent=Os01t0103900-01
Chr01	irgsp1_rep	CDS	204203	204440	.	+	0	Parent=Os01t0103900-01
Chr01	irgsp1_rep	CDS	204543	204635	.	+	2	Parent=Os01t0103900-01
Chr01	irgsp1_rep	CDS	204730	204875	.	+	2	Parent=Os01t0103900-01
Chr01	irgsp1_rep	CDS	205042	205149	.	+	0	Parent=Os01t0103900-01
Chr01	irgsp1_rep	CDS	205290	205378	.	+	0	Parent=Os01t0103900-01
Chr01	irgsp1_rep	CDS	205534	205543	.	+	1	Parent=Os01t0103900-01
Chr01	irgsp1_rep	three_prime_UTR	205544	206202	.	+	.	Parent=Os01t0103900-01
Chr01	irgsp1_rep	mRNA	206134	209606	.	-	.	ID=Os01t0104000-01;Name=Os01t0104000-01;Locus_id=Os01g0104000;Note=C-type lectin domain containing protein.;Transcript_evidence=AK103808 (DDBJ%2C Best hit);ORF_evidence=NP_175641.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),C-type lectin (IPR001304),Tyrosine-protein kinase%2C active site (IPR008266),Protein kinase-like domain (IPR011009),C-type lectin-like (IPR016186),C-type lectin fold (IPR016187);NIAS_FLcDNA=J033147A10;Expression=AK103808;TENOR=Os01t0104000-01;KEGG=Os01t0104000-01
Chr01	irgsp1_rep	five_prime_UTR	209526	209606	.	-	.	Parent=Os01t0104000-01
Chr01	irgsp1_rep	CDS	209438	209525	.	-	0	Parent=Os01t0104000-01
Chr01	irgsp1_rep	CDS	208408	208836	.	-	2	Parent=Os01t0104000-01
Chr01	irgsp1_rep	CDS	207706	208276	.	-	2	Parent=Os01t0104000-01
Chr01	irgsp1_rep	CDS	206450	207029	.	-	1	Parent=Os01t0104000-01
Chr01	irgsp1_rep	three_prime_UTR	206134	206449	.	-	.	Parent=Os01t0104000-01
Chr01	irgsp1_rep	mRNA	206131	209581	.	-	.	ID=Os01t0104000-02;Name=Os01t0104000-02;Locus_id=Os01g0104000;Note=Similar to predicted protein.;Transcript_evidence=AK072087 (DDBJ%2C Best hit);ORF_evidence=NP_175641.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),C-type lectin (IPR001304),Tyrosine-protein kinase%2C active site (IPR008266),Protein kinase-like domain (IPR011009),C-type lectin-like (IPR016186),C-type lectin fold (IPR016187);NIAS_FLcDNA=J013116I09;Expression=AK072087;TENOR=Os01t0104000-02;KEGG=Os01t0104000-02
Chr01	irgsp1_rep	five_prime_UTR	209526	209581	.	-	.	Parent=Os01t0104000-02
Chr01	irgsp1_rep	CDS	209438	209525	.	-	0	Parent=Os01t0104000-02
Chr01	irgsp1_rep	CDS	208408	208836	.	-	2	Parent=Os01t0104000-02
Chr01	irgsp1_rep	CDS	207706	208273	.	-	2	Parent=Os01t0104000-02
Chr01	irgsp1_rep	CDS	206450	207029	.	-	1	Parent=Os01t0104000-02
Chr01	irgsp1_rep	three_prime_UTR	206131	206449	.	-	.	Parent=Os01t0104000-02
Chr01	irgsp1_rep	mRNA	209771	214173	.	+	.	ID=Os01t0104100-01;Name=Os01t0104100-01;Locus_id=Os01g0104100;RAP-DB Gene Symbol Synonym(s)=OsNCA1a%2C OsCOIN;RAP-DB Gene Name Synonym(s)=NO CATALASE ACTIVITY 1a%2C cold-inducible;CGSNL Gene Symbol=NCA1A;CGSNL Gene Name=NO CATALASE ACTIVITY 1A;Oryzabase Gene Symbol Synonym(s)=OsCOIN%2C COIN%2C OsNCA1a%2C NCA1a;Oryzabase Gene Name Synonym(s)=cold-inducible%2C cold-inducible zinc finger protein;Note=Chaperone protein to regulate catalase (CAT) activity%2C Cold inducible zinc finger protein%2C Tolerance to cold%2C salt and drought;Transcript_evidence=AK072797;ORF_evidence=Q658D5;GO=Molecular Function: protein binding (GO:0005515);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Tetratricopeptide-like helical domain superfamily (IPR011990),Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING-type%2C conserved site (IPR017907);NIAS_FLcDNA=J023139M11;Manual Curation=April 9%2C 2019;Literature_PMID=30885124,17549515;Oryzabase=20542;TENOR=Os01t0104100-01;Subcellular location=cytosol (GO:0005829), nucleus (GO:0005634), plasma membrane (GO:0005886)
Chr01	irgsp1_rep	five_prime_UTR	209771	209896	.	+	.	Parent=Os01t0104100-01
Chr01	irgsp1_rep	five_prime_UTR	210244	210282	.	+	.	Parent=Os01t0104100-01
Chr01	irgsp1_rep	CDS	210283	210563	.	+	0	Parent=Os01t0104100-01
Chr01	irgsp1_rep	CDS	210659	210890	.	+	1	Parent=Os01t0104100-01
Chr01	irgsp1_rep	CDS	211015	211160	.	+	0	Parent=Os01t0104100-01
Chr01	irgsp1_rep	CDS	212265	212352	.	+	1	Parent=Os01t0104100-01
Chr01	irgsp1_rep	CDS	212433	212579	.	+	0	Parent=Os01t0104100-01
Chr01	irgsp1_rep	CDS	213490	213639	.	+	0	Parent=Os01t0104100-01
Chr01	irgsp1_rep	CDS	213741	213788	.	+	0	Parent=Os01t0104100-01
Chr01	irgsp1_rep	three_prime_UTR	213789	214173	.	+	.	Parent=Os01t0104100-01
Chr01	irgsp1_rep	mRNA	209794	214147	.	+	.	ID=Os01t0104100-02;Name=Os01t0104100-02;Locus_id=Os01g0104100;CGSNL Gene Symbol=NCA1A;CGSNL Gene Name=NO CATALASE ACTIVITY 1A;Oryzabase Gene Symbol Synonym(s)=OsCOIN%2C COIN%2C OsNCA1a%2C NCA1a;Oryzabase Gene Name Synonym(s)=cold-inducible%2C cold-inducible zinc finger protein;Note=Similar to protein binding / zinc ion binding.;Transcript_evidence=AK104280 (DDBJ%2C Best hit);ORF_evidence=NP_191004.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Tetratricopeptide-like helical (IPR011990),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907);NIAS_FLcDNA=001-006-B04;Manual Curation=April 9%2C 2019;Oryzabase=20542;TENOR=Os01t0104100-02
Chr01	irgsp1_rep	five_prime_UTR	209794	209896	.	+	.	Parent=Os01t0104100-02
Chr01	irgsp1_rep	five_prime_UTR	210244	210282	.	+	.	Parent=Os01t0104100-02
Chr01	irgsp1_rep	CDS	210283	210563	.	+	0	Parent=Os01t0104100-02
Chr01	irgsp1_rep	CDS	210659	210890	.	+	1	Parent=Os01t0104100-02
Chr01	irgsp1_rep	CDS	211015	211160	.	+	0	Parent=Os01t0104100-02
Chr01	irgsp1_rep	CDS	212265	212352	.	+	1	Parent=Os01t0104100-02
Chr01	irgsp1_rep	CDS	212433	212579	.	+	0	Parent=Os01t0104100-02
Chr01	irgsp1_rep	CDS	213490	213639	.	+	0	Parent=Os01t0104100-02
Chr01	irgsp1_rep	CDS	213741	213788	.	+	0	Parent=Os01t0104100-02
Chr01	irgsp1_rep	three_prime_UTR	213789	214147	.	+	.	Parent=Os01t0104100-02
Chr01	irgsp1_rep	mRNA	216212	217345	.	+	.	ID=Os01t0104200-00;Name=Os01t0104200-00;Locus_id=Os01g0104200;CGSNL Gene Symbol=NAC16;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 16;Oryzabase Gene Symbol Synonym(s)=ONAC016%2C ONAC16;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 016%2C NAC domain-containing protein 16;Note=No apical meristem (NAM) protein domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2ZNA6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);Oryzabase=15826;TENOR=Os01t0104200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	216212	216769	.	+	0	Parent=Os01t0104200-00
Chr01	irgsp1_rep	CDS	216884	217345	.	+	0	Parent=Os01t0104200-00
Chr01	irgsp1_rep	mRNA	224916	225543	.	+	.	ID=Os01t0104350-00;Name=Os01t0104350-00;Locus_id=Os01g0104350;Note=Non-protein coding transcript.;Transcript_evidence=CT834982 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os01t0104350-00
Chr01	irgsp1_rep	exon	224916	225543	.	+	.	Parent=Os01t0104350-00
Chr01	irgsp1_rep	mRNA	226897	229229	.	+	.	ID=Os01t0104400-01;Name=Os01t0104400-01;Locus_id=Os01g0104400;RAP-DB Gene Symbol Synonym(s)=OsEULS3;RAP-DB Gene Name Synonym(s)=Euonymus lectin S3;Note=S-type euonymus-related lectin (EUL)%2C Response to ABA treatment;Transcript_evidence=AK071375;ORF_evidence=Q9FTY4;InterPro=Ricin B-like lectins (IPR035992);NIAS_FLcDNA=J023095C18;Manual Curation=March 27%2C 2020;Literature_PMID=32194594;Expression=AK071375;TENOR=Os01t0104400-01;KEGG=Os01t0104400-01;Subcellular location=nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	226897	227181	.	+	.	Parent=Os01t0104400-01
Chr01	irgsp1_rep	CDS	227182	227634	.	+	0	Parent=Os01t0104400-01
Chr01	irgsp1_rep	CDS	227742	227864	.	+	0	Parent=Os01t0104400-01
Chr01	irgsp1_rep	CDS	228557	228785	.	+	0	Parent=Os01t0104400-01
Chr01	irgsp1_rep	CDS	228930	228931	.	+	2	Parent=Os01t0104400-01
Chr01	irgsp1_rep	three_prime_UTR	228932	229229	.	+	.	Parent=Os01t0104400-01
Chr01	irgsp1_rep	mRNA	227139	229301	.	+	.	ID=Os01t0104400-02;Name=Os01t0104400-02;Locus_id=Os01g0104400;CGSNL Gene Symbol=EULS3;CGSNL Gene Name=EUL-RELATED LECTIN S3;Oryzabase Gene Symbol Synonym(s)=OsEULS3;Oryzabase Gene Name Synonym(s)=EUL-related lectin S3;Note=Ricin B-related lectin domain containing protein.;Transcript_evidence=AK060132 (DDBJ%2C Best hit);ORF_evidence=NP_001149550.1 (RefSeq);InterPro=Ricin B-related lectin (IPR008997);NIAS_FLcDNA=006-309-C04;Oryzabase=23520;Expression=AK060132;TENOR=Os01t0104400-02;KEGG=Os01t0104400-02
Chr01	irgsp1_rep	five_prime_UTR	227139	227181	.	+	.	Parent=Os01t0104400-02
Chr01	irgsp1_rep	CDS	227182	227634	.	+	0	Parent=Os01t0104400-02
Chr01	irgsp1_rep	CDS	227742	227864	.	+	0	Parent=Os01t0104400-02
Chr01	irgsp1_rep	CDS	228557	228785	.	+	0	Parent=Os01t0104400-02
Chr01	irgsp1_rep	CDS	228930	228931	.	+	2	Parent=Os01t0104400-02
Chr01	irgsp1_rep	three_prime_UTR	228932	229301	.	+	.	Parent=Os01t0104400-02
Chr01	irgsp1_rep	mRNA	227179	229214	.	+	.	ID=Os01t0104400-03;Name=Os01t0104400-03;Locus_id=Os01g0104400;CGSNL Gene Symbol=EULS3;CGSNL Gene Name=EUL-RELATED LECTIN S3;Oryzabase Gene Symbol Synonym(s)=OsEULS3;Oryzabase Gene Name Synonym(s)=EUL-related lectin S3;Note=Ricin B-related lectin domain containing protein.;Transcript_evidence=AK104820 (DDBJ%2C Best hit),AK104555 (DDBJ%2C Best hit);ORF_evidence=NP_001149550.1 (RefSeq);InterPro=Ricin B-related lectin (IPR008997);NIAS_FLcDNA=001-041-A11,006-305-F10;Oryzabase=23520;TENOR=Os01t0104400-03
Chr01	irgsp1_rep	five_prime_UTR	227179	227181	.	+	.	Parent=Os01t0104400-03
Chr01	irgsp1_rep	CDS	227182	227634	.	+	0	Parent=Os01t0104400-03
Chr01	irgsp1_rep	CDS	227742	227864	.	+	0	Parent=Os01t0104400-03
Chr01	irgsp1_rep	CDS	228557	228785	.	+	0	Parent=Os01t0104400-03
Chr01	irgsp1_rep	CDS	228930	228931	.	+	2	Parent=Os01t0104400-03
Chr01	irgsp1_rep	three_prime_UTR	228932	229214	.	+	.	Parent=Os01t0104400-03
Chr01	irgsp1_rep	mRNA	241680	243440	.	+	.	ID=Os01t0104500-01;Name=Os01t0104500-01;Locus_id=Os01g0104500;RAP-DB Gene Symbol Synonym(s)=OsNAC20;CGSNL Gene Symbol=NAC20;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 20;Oryzabase Gene Symbol Synonym(s)=ONAC020%2C ONAC20%2C DLN1%2C OsDLN1;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 020%2C NAC domain-containing protein 20%2C DLN repressor 1%2C DLN motif protein 1;Note=NAC transcription factor%2C Regulation of starch and storage protein synthesis;Transcript_evidence=AK242268;ORF_evidence=Q9FTY0;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=NAC domain superfamily (IPR036093),NAC domain (IPR003441);NIAS_FLcDNA=J075186C19;Manual Curation=September 29%2C 2020;Literature_PMID=32989010;Oryzabase=15827;TENOR=Os01t0104500-01;KEGG=Os01t0104500-01;Subcellular location=nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	241680	241702	.	+	.	Parent=Os01t0104500-01
Chr01	irgsp1_rep	five_prime_UTR	241866	241907	.	+	.	Parent=Os01t0104500-01
Chr01	irgsp1_rep	CDS	241908	242091	.	+	0	Parent=Os01t0104500-01
Chr01	irgsp1_rep	CDS	242199	242977	.	+	2	Parent=Os01t0104500-01
Chr01	irgsp1_rep	three_prime_UTR	242978	243440	.	+	.	Parent=Os01t0104500-01
Chr01	irgsp1_rep	mRNA	248828	256872	.	-	.	ID=Os01t0104600-01;Name=Os01t0104600-01;Locus_id=Os01g0104600;RAP-DB Gene Symbol Synonym(s)=OsDET1;RAP-DB Gene Name Synonym(s)=DE-ETIOLATED1;Oryzabase Gene Symbol Synonym(s)=OsDET1;Oryzabase Gene Name Synonym(s)=DE-ETIOLATED1;Note=Homolog of Arabidopsis DE-ETIOLATED1 (DET1)%2C Modulation of the ABA signaling pathway and ABA biosynthesis%2C Regulation of chlorophyll content;Transcript_evidence=AK100613,GQ898934 (Chongqing 2%2C indica);ORF_evidence=Q658D0,D0EW63 (indica);InterPro=De-etiolated protein 1%2C Det1 (IPR019138);NIAS_FLcDNA=J023107M18;Manual Curation=June 14%2C 2016;Literature_PMID=27208292,23849131;Oryzabase=13483;TENOR=Os01t0104600-01
Chr01	irgsp1_rep	five_prime_UTR	256442	256872	.	-	.	Parent=Os01t0104600-01
Chr01	irgsp1_rep	CDS	256361	256441	.	-	0	Parent=Os01t0104600-01
Chr01	irgsp1_rep	CDS	255674	256098	.	-	0	Parent=Os01t0104600-01
Chr01	irgsp1_rep	CDS	255325	255553	.	-	1	Parent=Os01t0104600-01
Chr01	irgsp1_rep	CDS	251695	251790	.	-	0	Parent=Os01t0104600-01
Chr01	irgsp1_rep	CDS	251316	251384	.	-	0	Parent=Os01t0104600-01
Chr01	irgsp1_rep	CDS	251026	251082	.	-	0	Parent=Os01t0104600-01
Chr01	irgsp1_rep	CDS	250860	250940	.	-	0	Parent=Os01t0104600-01
Chr01	irgsp1_rep	CDS	250617	250781	.	-	0	Parent=Os01t0104600-01
Chr01	irgsp1_rep	CDS	249861	249956	.	-	0	Parent=Os01t0104600-01
Chr01	irgsp1_rep	CDS	249369	249468	.	-	0	Parent=Os01t0104600-01
Chr01	irgsp1_rep	CDS	248971	249107	.	-	2	Parent=Os01t0104600-01
Chr01	irgsp1_rep	three_prime_UTR	248828	248970	.	-	.	Parent=Os01t0104600-01
Chr01	irgsp1_rep	mRNA	248828	256571	.	-	.	ID=Os01t0104600-02;Name=Os01t0104600-02;Locus_id=Os01g0104600;Oryzabase Gene Symbol Synonym(s)=OsDET1;Oryzabase Gene Name Synonym(s)=DE-ETIOLATED1;Note=Similar to Light-mediated development protein DET1 (Deetiolated1 homolog) (tDET1) (High pigmentation protein 2) (Protein dark green).;Transcript_evidence=AK058683 (DDBJ%2C Best hit);ORF_evidence=D0EW63 (UniProt);InterPro=De-etiolated protein 1%2C Det1 (IPR019138);NIAS_FLcDNA=001-019-A06;Oryzabase=13483;TENOR=Os01t0104600-02
Chr01	irgsp1_rep	five_prime_UTR	256442	256571	.	-	.	Parent=Os01t0104600-02
Chr01	irgsp1_rep	CDS	256361	256441	.	-	0	Parent=Os01t0104600-02
Chr01	irgsp1_rep	CDS	255674	256098	.	-	0	Parent=Os01t0104600-02
Chr01	irgsp1_rep	CDS	255325	255553	.	-	1	Parent=Os01t0104600-02
Chr01	irgsp1_rep	CDS	251695	251790	.	-	0	Parent=Os01t0104600-02
Chr01	irgsp1_rep	CDS	251316	251384	.	-	0	Parent=Os01t0104600-02
Chr01	irgsp1_rep	CDS	251026	251082	.	-	0	Parent=Os01t0104600-02
Chr01	irgsp1_rep	CDS	250860	250940	.	-	0	Parent=Os01t0104600-02
Chr01	irgsp1_rep	CDS	250617	250781	.	-	0	Parent=Os01t0104600-02
Chr01	irgsp1_rep	CDS	249861	249956	.	-	0	Parent=Os01t0104600-02
Chr01	irgsp1_rep	CDS	249369	249468	.	-	0	Parent=Os01t0104600-02
Chr01	irgsp1_rep	CDS	248971	249107	.	-	2	Parent=Os01t0104600-02
Chr01	irgsp1_rep	three_prime_UTR	248828	248970	.	-	.	Parent=Os01t0104600-02
Chr01	irgsp1_rep	mRNA	261530	268145	.	+	.	ID=Os01t0104800-01;Name=Os01t0104800-01;Locus_id=Os01g0104800;Note=Sas10/Utp3 family protein.;Transcript_evidence=AK067602 (DDBJ%2C Best hit);ORF_evidence=B9EYS2 (UniProt);GO=Biological Process: gene silencing (GO:0016458),Cellular Component: nucleus (GO:0005634);InterPro=Sas10/Utp3/C1D (IPR007146),Something about silencing protein 10 (Sas10)%2C C-terminal (IPR018972);NIAS_FLcDNA=J013109E04;Expression=AK067602;TENOR=Os01t0104800-01;KEGG=Os01t0104800-01
Chr01	irgsp1_rep	five_prime_UTR	261530	261561	.	+	.	Parent=Os01t0104800-01
Chr01	irgsp1_rep	CDS	261562	261661	.	+	0	Parent=Os01t0104800-01
Chr01	irgsp1_rep	CDS	261767	261805	.	+	2	Parent=Os01t0104800-01
Chr01	irgsp1_rep	CDS	261895	261941	.	+	2	Parent=Os01t0104800-01
Chr01	irgsp1_rep	CDS	262582	262681	.	+	0	Parent=Os01t0104800-01
Chr01	irgsp1_rep	CDS	262925	263181	.	+	2	Parent=Os01t0104800-01
Chr01	irgsp1_rep	CDS	263525	263640	.	+	0	Parent=Os01t0104800-01
Chr01	irgsp1_rep	CDS	264014	264098	.	+	1	Parent=Os01t0104800-01
Chr01	irgsp1_rep	CDS	265236	265415	.	+	0	Parent=Os01t0104800-01
Chr01	irgsp1_rep	CDS	265506	265649	.	+	0	Parent=Os01t0104800-01
Chr01	irgsp1_rep	CDS	265740	265817	.	+	0	Parent=Os01t0104800-01
Chr01	irgsp1_rep	CDS	265909	266045	.	+	0	Parent=Os01t0104800-01
Chr01	irgsp1_rep	CDS	266138	266246	.	+	1	Parent=Os01t0104800-01
Chr01	irgsp1_rep	CDS	267237	267514	.	+	0	Parent=Os01t0104800-01
Chr01	irgsp1_rep	CDS	267591	267657	.	+	1	Parent=Os01t0104800-01
Chr01	irgsp1_rep	CDS	267734	267802	.	+	0	Parent=Os01t0104800-01
Chr01	irgsp1_rep	CDS	267880	268011	.	+	0	Parent=Os01t0104800-01
Chr01	irgsp1_rep	three_prime_UTR	268012	268145	.	+	.	Parent=Os01t0104800-01
Chr01	irgsp1_rep	mRNA	263523	268120	.	+	.	ID=Os01t0104800-02;Name=Os01t0104800-02;Locus_id=Os01g0104800;Note=Hypothetical conserved gene.;Transcript_evidence=AK103287 (DDBJ%2C Best hit);ORF_evidence=B9EYS2 (UniProt);GO=Biological Process: gene silencing (GO:0016458),Cellular Component: nucleus (GO:0005634);InterPro=Sas10/Utp3/C1D (IPR007146),Something about silencing protein 10 (Sas10)%2C C-terminal (IPR018972);NIAS_FLcDNA=J033124N04;Expression=AK103287;TENOR=Os01t0104800-02;KEGG=Os01t0104800-02
Chr01	irgsp1_rep	five_prime_UTR	263523	263524	.	+	.	Parent=Os01t0104800-02
Chr01	irgsp1_rep	CDS	263525	263640	.	+	0	Parent=Os01t0104800-02
Chr01	irgsp1_rep	CDS	264014	264098	.	+	1	Parent=Os01t0104800-02
Chr01	irgsp1_rep	CDS	265236	265415	.	+	0	Parent=Os01t0104800-02
Chr01	irgsp1_rep	CDS	265506	265649	.	+	0	Parent=Os01t0104800-02
Chr01	irgsp1_rep	CDS	265740	265817	.	+	0	Parent=Os01t0104800-02
Chr01	irgsp1_rep	CDS	265909	266045	.	+	0	Parent=Os01t0104800-02
Chr01	irgsp1_rep	CDS	266138	266246	.	+	1	Parent=Os01t0104800-02
Chr01	irgsp1_rep	CDS	267237	267514	.	+	0	Parent=Os01t0104800-02
Chr01	irgsp1_rep	CDS	267591	267657	.	+	1	Parent=Os01t0104800-02
Chr01	irgsp1_rep	CDS	267734	267802	.	+	0	Parent=Os01t0104800-02
Chr01	irgsp1_rep	CDS	267880	268011	.	+	0	Parent=Os01t0104800-02
Chr01	irgsp1_rep	three_prime_UTR	268012	268120	.	+	.	Parent=Os01t0104800-02
Chr01	irgsp1_rep	mRNA	270179	275084	.	-	.	ID=Os01t0104900-01;Name=Os01t0104900-01;Locus_id=Os01g0104900;Note=Transferase family protein.;Transcript_evidence=AK121535 (DDBJ%2C Best hit);ORF_evidence=A2WJP7 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J033031D14;Expression=AK121535;TENOR=Os01t0104900-01;KEGG=Os01t0104900-01
Chr01	irgsp1_rep	five_prime_UTR	274958	275084	.	-	.	Parent=Os01t0104900-01
Chr01	irgsp1_rep	CDS	274529	274957	.	-	0	Parent=Os01t0104900-01
Chr01	irgsp1_rep	CDS	270356	271333	.	-	0	Parent=Os01t0104900-01
Chr01	irgsp1_rep	three_prime_UTR	270179	270355	.	-	.	Parent=Os01t0104900-01
Chr01	irgsp1_rep	mRNA	270250	271518	.	-	.	ID=Os01t0104900-02;Name=Os01t0104900-02;Locus_id=Os01g0104900;Note=Hypothetical conserved gene.;Transcript_evidence=AK071797 (DDBJ%2C Best hit);ORF_evidence=Q657X9 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J023113I10;Expression=AK071797;TENOR=Os01t0104900-02;KEGG=Os01t0104900-02
Chr01	irgsp1_rep	five_prime_UTR	271457	271518	.	-	.	Parent=Os01t0104900-02
Chr01	irgsp1_rep	five_prime_UTR	271310	271333	.	-	.	Parent=Os01t0104900-02
Chr01	irgsp1_rep	CDS	270356	271309	.	-	0	Parent=Os01t0104900-02
Chr01	irgsp1_rep	three_prime_UTR	270250	270355	.	-	.	Parent=Os01t0104900-02
Chr01	irgsp1_rep	mRNA	284762	291892	.	-	.	ID=Os01t0105300-01;Name=Os01t0105300-01;Locus_id=Os01g0105300;Note=Similar to HAT family dimerisation domain containing protein%2C expressed.;Transcript_evidence=AK072732 (DDBJ%2C Best hit);ORF_evidence=Q2R271 (UniProt);NIAS_FLcDNA=J023138L22;TENOR=Os01t0105300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	291838	291892	.	-	.	Parent=Os01t0105300-01
Chr01	irgsp1_rep	five_prime_UTR	291678	291738	.	-	.	Parent=Os01t0105300-01
Chr01	irgsp1_rep	five_prime_UTR	291520	291534	.	-	.	Parent=Os01t0105300-01
Chr01	irgsp1_rep	five_prime_UTR	291398	291436	.	-	.	Parent=Os01t0105300-01
Chr01	irgsp1_rep	five_prime_UTR	285021	287047	.	-	.	Parent=Os01t0105300-01
Chr01	irgsp1_rep	CDS	284931	285020	.	-	0	Parent=Os01t0105300-01
Chr01	irgsp1_rep	three_prime_UTR	284762	284930	.	-	.	Parent=Os01t0105300-01
Chr01	irgsp1_rep	mRNA	288372	292296	.	+	.	ID=Os01t0105400-01;Name=Os01t0105400-01;Locus_id=Os01g0105400;Note=Similar to Kinesin heavy chain.;Transcript_evidence=AK106913 (DDBJ%2C Best hit);ORF_evidence=Q93XG2 (UniProt);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752);NIAS_FLcDNA=002-119-A09;Expression=AK106913;TENOR=Os01t0105400-01;KEGG=Os01t0105400-01
Chr01	irgsp1_rep	five_prime_UTR	288372	288846	.	+	.	Parent=Os01t0105400-01
Chr01	irgsp1_rep	five_prime_UTR	288950	289116	.	+	.	Parent=Os01t0105400-01
Chr01	irgsp1_rep	five_prime_UTR	289202	289572	.	+	.	Parent=Os01t0105400-01
Chr01	irgsp1_rep	five_prime_UTR	289661	289830	.	+	.	Parent=Os01t0105400-01
Chr01	irgsp1_rep	five_prime_UTR	290395	290432	.	+	.	Parent=Os01t0105400-01
Chr01	irgsp1_rep	CDS	290433	290512	.	+	0	Parent=Os01t0105400-01
Chr01	irgsp1_rep	CDS	291372	291558	.	+	1	Parent=Os01t0105400-01
Chr01	irgsp1_rep	three_prime_UTR	291559	291574	.	+	.	Parent=Os01t0105400-01
Chr01	irgsp1_rep	three_prime_UTR	291648	291779	.	+	.	Parent=Os01t0105400-01
Chr01	irgsp1_rep	three_prime_UTR	291859	291948	.	+	.	Parent=Os01t0105400-01
Chr01	irgsp1_rep	three_prime_UTR	292073	292296	.	+	.	Parent=Os01t0105400-01
Chr01	irgsp1_rep	mRNA	303233	306736	.	+	.	ID=Os01t0105700-01;Name=Os01t0105700-01;Locus_id=Os01g0105700;Oryzabase Gene Symbol Synonym(s)=OsbHLH071%2C bHLH071%2C bHLH71;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 071;Note=Basic helix-loop-helix dimerisation region bHLH domain containing protein.;Transcript_evidence=AK119493 (DDBJ%2C Best hit);ORF_evidence=Q657Z3 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=001-134-D09;Oryzabase=15358;Expression=AK119493;TENOR=Os01t0105700-01;KEGG=Os01t0105700-01
Chr01	irgsp1_rep	five_prime_UTR	303233	303328	.	+	.	Parent=Os01t0105700-01
Chr01	irgsp1_rep	CDS	303329	303471	.	+	0	Parent=Os01t0105700-01
Chr01	irgsp1_rep	CDS	303981	304509	.	+	1	Parent=Os01t0105700-01
Chr01	irgsp1_rep	CDS	305572	305718	.	+	0	Parent=Os01t0105700-01
Chr01	irgsp1_rep	CDS	305834	305899	.	+	0	Parent=Os01t0105700-01
Chr01	irgsp1_rep	CDS	305993	306058	.	+	0	Parent=Os01t0105700-01
Chr01	irgsp1_rep	CDS	306171	306245	.	+	0	Parent=Os01t0105700-01
Chr01	irgsp1_rep	CDS	306353	306493	.	+	0	Parent=Os01t0105700-01
Chr01	irgsp1_rep	three_prime_UTR	306494	306736	.	+	.	Parent=Os01t0105700-01
Chr01	irgsp1_rep	mRNA	306871	308842	.	-	.	ID=Os01t0105800-01;Name=Os01t0105800-01;Locus_id=Os01g0105800;CGSNL Gene Symbol=ISC9;CGSNL Gene Name=IRON-SULFUR CLUSTER PROTEIN 9;Oryzabase Gene Symbol Synonym(s)=OsISC9;Oryzabase Gene Name Synonym(s)=Iron-sulfur cluster protein 9;Note=Similar to Iron sulfur assembly protein 1.;Transcript_evidence=AK066672 (DDBJ%2C Best hit);ORF_evidence=NP_001147131.1 (RefSeq);GO=Biological Process: iron-sulfur cluster assembly (GO:0016226),Molecular Function: structural molecule activity (GO:0005198),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=FeS cluster biogenesis (IPR000361),FeS cluster insertion (IPR016092),FeS cluster insertion%2C C-terminal%2C conserved site (IPR017870);NIAS_FLcDNA=J013071F21;Oryzabase=13424;Expression=AK066672;TENOR=Os01t0105800-01;KEGG=Os01t0105800-01
Chr01	irgsp1_rep	five_prime_UTR	308703	308842	.	-	.	Parent=Os01t0105800-01
Chr01	irgsp1_rep	five_prime_UTR	308602	308626	.	-	.	Parent=Os01t0105800-01
Chr01	irgsp1_rep	CDS	308397	308601	.	-	0	Parent=Os01t0105800-01
Chr01	irgsp1_rep	CDS	307296	307413	.	-	2	Parent=Os01t0105800-01
Chr01	irgsp1_rep	CDS	307124	307217	.	-	1	Parent=Os01t0105800-01
Chr01	irgsp1_rep	three_prime_UTR	306871	307123	.	-	.	Parent=Os01t0105800-01
Chr01	irgsp1_rep	mRNA	309520	313170	.	-	.	ID=Os01t0105900-01;Name=Os01t0105900-01;Locus_id=Os01g0105900;Note=Carbohydrate/purine kinase domain containing protein.;Transcript_evidence=AK066907 (DDBJ%2C Best hit);ORF_evidence=NP_001148411.1 (RefSeq);InterPro=Carbohydrate/purine kinase (IPR011611);NIAS_FLcDNA=J013092I02;Expression=AK066907;TENOR=Os01t0105900-01;KEGG=Os01t0105900-01
Chr01	irgsp1_rep	five_prime_UTR	313065	313170	.	-	.	Parent=Os01t0105900-01
Chr01	irgsp1_rep	CDS	312867	313064	.	-	0	Parent=Os01t0105900-01
Chr01	irgsp1_rep	CDS	311163	311426	.	-	0	Parent=Os01t0105900-01
Chr01	irgsp1_rep	CDS	311002	311073	.	-	0	Parent=Os01t0105900-01
Chr01	irgsp1_rep	CDS	310880	310918	.	-	0	Parent=Os01t0105900-01
Chr01	irgsp1_rep	CDS	310632	310739	.	-	0	Parent=Os01t0105900-01
Chr01	irgsp1_rep	CDS	310455	310552	.	-	0	Parent=Os01t0105900-01
Chr01	irgsp1_rep	CDS	310256	310367	.	-	1	Parent=Os01t0105900-01
Chr01	irgsp1_rep	CDS	309822	310070	.	-	0	Parent=Os01t0105900-01
Chr01	irgsp1_rep	three_prime_UTR	309520	309821	.	-	.	Parent=Os01t0105900-01
Chr01	irgsp1_rep	mRNA	319754	322205	.	+	.	ID=Os01t0106200-01;Name=Os01t0106200-01;Locus_id=Os01g0106200;Note=Similar to RER1A protein (AtRER1A).;Transcript_evidence=AK060999 (DDBJ%2C Best hit);ORF_evidence=B6TRU3 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Retrieval of early ER protein Rer1 (IPR004932);NIAS_FLcDNA=006-203-F05;Expression=AK060999;TENOR=Os01t0106200-01;KEGG=Os01t0106200-01
Chr01	irgsp1_rep	five_prime_UTR	319754	319874	.	+	.	Parent=Os01t0106200-01
Chr01	irgsp1_rep	CDS	319875	320236	.	+	0	Parent=Os01t0106200-01
Chr01	irgsp1_rep	CDS	321468	321648	.	+	1	Parent=Os01t0106200-01
Chr01	irgsp1_rep	CDS	321928	321975	.	+	0	Parent=Os01t0106200-01
Chr01	irgsp1_rep	three_prime_UTR	321976	322205	.	+	.	Parent=Os01t0106200-01
Chr01	irgsp1_rep	mRNA	322591	323923	.	-	.	ID=Os01t0106300-01;Name=Os01t0106300-01;Locus_id=Os01g0106300;Note=Similar to Isoflavone reductase homolog IRL (EC 1.3.1.-).;Transcript_evidence=AK098946 (DDBJ%2C Best hit),AK061325 (DDBJ%2C Best hit),AK104189 (DDBJ%2C Best hit),AK104238 (DDBJ%2C Best hit),AK104669 (DDBJ%2C Best hit),AK104735 (DDBJ%2C Best hit),AK119550 (DDBJ%2C Best hit);ORF_evidence=Q8VYH7 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NmrA-like (IPR008030),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013045H04,006-302-G05,006-303-C06,006-307-H12,006-312-B02,001-038-D01,001-207-E04;Expression=AK098946;TENOR=Os01t0106300-01;KEGG=Os01t0106300-01
Chr01	irgsp1_rep	five_prime_UTR	323847	323923	.	-	.	Parent=Os01t0106300-01
Chr01	irgsp1_rep	CDS	323054	323846	.	-	0	Parent=Os01t0106300-01
Chr01	irgsp1_rep	CDS	322810	322973	.	-	2	Parent=Os01t0106300-01
Chr01	irgsp1_rep	three_prime_UTR	322591	322809	.	-	.	Parent=Os01t0106300-01
Chr01	irgsp1_rep	mRNA	327128	328450	.	-	.	ID=Os01t0106400-01;Name=Os01t0106400-01;Locus_id=Os01g0106400;RAP-DB Gene Symbol Synonym(s)=OsIRL;RAP-DB Gene Name Synonym(s)=isoflavone reductase-like;Note=Isoflavone reductase-like protein%2C Homeostasis of reactive oxygen species (ROS);Transcript_evidence=AK102701,AK109339;ORF_evidence=Q9FTN5;InterPro=NAD(P)-binding domain superfamily (IPR036291),NmrA-like domain (IPR008030);NIAS_FLcDNA=J033103L17,006-202-E10;Manual Curation=October 22%2C 2020;Literature_PMID=19825006,14651265;Expression=AK102701;TENOR=Os01t0106400-01;KEGG=Os01t0106400-01
Chr01	irgsp1_rep	five_prime_UTR	328399	328450	.	-	.	Parent=Os01t0106400-01
Chr01	irgsp1_rep	CDS	327618	328398	.	-	0	Parent=Os01t0106400-01
Chr01	irgsp1_rep	CDS	327337	327500	.	-	2	Parent=Os01t0106400-01
Chr01	irgsp1_rep	three_prime_UTR	327128	327336	.	-	.	Parent=Os01t0106400-01
Chr01	irgsp1_rep	mRNA	331382	332345	.	-	.	ID=Os01t0106500-01;Name=Os01t0106500-01;Locus_id=Os01g0106500;Note=Conserved hypothetical protein.;Transcript_evidence=AK242772 (DDBJ%2C Best hit);ORF_evidence=NP_001172120.1 (RefSeq);NIAS_FLcDNA=J090053L06;TENOR=Os01t0106500-01;KEGG=Os01t0106500-01
Chr01	irgsp1_rep	five_prime_UTR	332275	332345	.	-	.	Parent=Os01t0106500-01
Chr01	irgsp1_rep	CDS	331630	332274	.	-	0	Parent=Os01t0106500-01
Chr01	irgsp1_rep	three_prime_UTR	331382	331629	.	-	.	Parent=Os01t0106500-01
Chr01	irgsp1_rep	mRNA	332667	333689	.	-	.	ID=Os01t0106600-01;Name=Os01t0106600-01;Locus_id=Os01g0106600;Note=Similar to Chitin-binding lectin 1 precursor (PL-I).;Transcript_evidence=AK061314 (DDBJ%2C Best hit);ORF_evidence=A2ZNC8 (UniProt);NIAS_FLcDNA=006-302-C12;Expression=AK061314;TENOR=Os01t0106600-01;KEGG=Os01t0106600-01
Chr01	irgsp1_rep	five_prime_UTR	333637	333689	.	-	.	Parent=Os01t0106600-01
Chr01	irgsp1_rep	CDS	332758	333636	.	-	0	Parent=Os01t0106600-01
Chr01	irgsp1_rep	three_prime_UTR	332667	332757	.	-	.	Parent=Os01t0106600-01
Chr01	irgsp1_rep	mRNA	335708	371194	.	+	.	ID=Os01t0106700-01;Name=Os01t0106700-01;Locus_id=Os01g0106700;RAP-DB Gene Symbol Synonym(s)=OsATM;RAP-DB Gene Name Synonym(s)=ATAXIA TELANGIECTASIA-MUTATED;CGSNL Gene Symbol=ATM;CGSNL Gene Name=ATR-MEDIATED SIGNALING RESPONSE;Oryzabase Gene Symbol Synonym(s)=OsATM;Oryzabase Gene Name Synonym(s)=ATM homolog%2C ATR-mediated signaling response;Note=PI3Kc (Phosphoinositide 3-kinasecatalytic domain) and FATC (FRAP%2C ATM%2C TRRAP C-terminal) domain containing protein%2C ATM homolog%2C Accurate repair of meiotic double-strand breaks;Transcript_evidence=XM_015759924;ORF_evidence=XP_015615410.1;GO=Molecular Function: protein binding (GO:0005515),Molecular Function: kinase activity (GO:0016301);InterPro=Protein kinase-like domain superfamily (IPR011009),Phosphatidylinositol 3-/4-kinase%2C catalytic domain superfamily (IPR036940),PIK-related kinase (IPR014009),Phosphatidylinositol 3-/4-kinase%2C catalytic domain (IPR000403),FATC domain (IPR003152),Phosphatidylinositol 3/4-kinase%2C conserved site (IPR018936);Manual Curation=May 19%2C 2020;Literature_PMID=32404412;Oryzabase=20420;TENOR=Os01t0106700-00;KEGG=Os01t0106700-00 (EC:2.7.11.1)
Chr01	irgsp1_rep	five_prime_UTR	335708	335808	.	+	.	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	335809	335877	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	335966	336074	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	336159	336299	.	+	2	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	337337	337498	.	+	2	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	337577	337772	.	+	2	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	337914	338070	.	+	1	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	338180	338310	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	338385	338472	.	+	1	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	338587	338690	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	339346	339444	.	+	1	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	340060	340116	.	+	1	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	340262	340337	.	+	1	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	340519	340602	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	340969	341010	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	341128	341198	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	342516	342564	.	+	1	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	343370	343441	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	344149	344286	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	344393	344473	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	345166	345353	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	345591	346188	.	+	1	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	346274	346342	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	346458	346622	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	347729	347854	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	348048	348175	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	348986	349142	.	+	1	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	349342	349388	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	349472	349535	.	+	1	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	349691	349765	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	350292	350414	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	350797	350982	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	352179	352303	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	352390	352459	.	+	1	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	352974	353101	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	353585	353726	.	+	1	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	353806	353946	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	354065	354163	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	354239	354285	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	354454	354652	.	+	1	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	354758	354967	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	355686	355757	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	355836	355905	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	356306	356414	.	+	2	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	356521	356644	.	+	1	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	356732	356863	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	357252	357317	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	357805	357852	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	358572	358676	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	358779	358865	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	359097	359399	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	359482	359594	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	360082	360148	.	+	1	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	360236	360310	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	360395	360517	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	361156	361320	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	361401	361502	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	362545	362696	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	362794	362995	.	+	1	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	363079	363126	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	363215	363298	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	364302	364385	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	364890	364970	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	365044	365133	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	365217	365279	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	366238	366378	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	366494	366550	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	366638	366697	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	367091	367185	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	367275	367383	.	+	1	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	368067	368156	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	368308	368387	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	368480	368558	.	+	1	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	368660	368706	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	368804	368903	.	+	1	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	369005	369136	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	369335	369469	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	369553	369618	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	370317	370457	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	CDS	370575	370652	.	+	0	Parent=Os01t0106700-01
Chr01	irgsp1_rep	three_prime_UTR	370653	371194	.	+	.	Parent=Os01t0106700-01
Chr01	irgsp1_rep	mRNA	371831	374412	.	+	.	ID=Os01t0106800-01;Name=Os01t0106800-01;Locus_id=Os01g0106800;Oryzabase Gene Symbol Synonym(s)=OsRBX1b%2C RBX1b;Oryzabase Gene Name Synonym(s)=RING-box protein%2C RING-BOX1b;Note=Similar to RING-box protein 1A (Regulator of cullins 1a) (dRbx1).;Transcript_evidence=AK059300 (DDBJ%2C Best hit),AK073331 (DDBJ%2C Best hit),AK119792 (DDBJ%2C Best hit);ORF_evidence=B6T6J8 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=001-025-F02,J033026G05,002-175-A04;Oryzabase=16041;TENOR=Os01t0106800-01
Chr01	irgsp1_rep	five_prime_UTR	371831	371910	.	+	.	Parent=Os01t0106800-01
Chr01	irgsp1_rep	CDS	371911	372070	.	+	0	Parent=Os01t0106800-01
Chr01	irgsp1_rep	CDS	372168	372218	.	+	2	Parent=Os01t0106800-01
Chr01	irgsp1_rep	CDS	372324	372383	.	+	2	Parent=Os01t0106800-01
Chr01	irgsp1_rep	CDS	373958	374029	.	+	2	Parent=Os01t0106800-01
Chr01	irgsp1_rep	CDS	374115	374152	.	+	2	Parent=Os01t0106800-01
Chr01	irgsp1_rep	three_prime_UTR	374153	374412	.	+	.	Parent=Os01t0106800-01
Chr01	irgsp1_rep	mRNA	374728	380713	.	-	.	ID=Os01t0106900-01;Name=Os01t0106900-01;Locus_id=Os01g0106900;RAP-DB Gene Symbol Synonym(s)=OsDXR;RAP-DB Gene Name Synonym(s)=1-deoxy-D-xylulose 5-phosphate reductoisomerase%2C deoxyxylulose 5-phosphate reductoisomerase;Oryzabase Gene Symbol Synonym(s)=OsDXR%2C DXR%2C OsIspC%2C IspC;Oryzabase Gene Name Synonym(s)=1-deoxy-D-xylulose 5-phosphate reductoisomerase%2C DXP reductoisomerase%2C deoxyxylulose 5-phosphate reductoisomerase;Note=Deoxyxylulose 5-phosphate reductoisomerase;Transcript_evidence=AK099702;ORF_evidence=Q8W250;GO=Biological Process: isoprenoid biosynthetic process (GO:0008299),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: protein binding (GO:0005515),Molecular Function: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity (GO:0030604),Molecular Function: metal ion binding (GO:0046872),Molecular Function: NADPH binding (GO:0070402);InterPro=NAD(P)-binding domain superfamily (IPR036291),DXP reductoisomerase%2C C-terminal domain superfamily (IPR036169),1-deoxy-D-xylulose 5-phosphate reductoisomerase (IPR003821),1-deoxy-D-xylulose 5-phosphate reductoisomerase%2C N-terminal (IPR013512),1-deoxy-D-xylulose 5-phosphate reductoisomerase%2C C-terminal (IPR013644),DXP reductoisomerase C-terminal domain (IPR026877);NIAS_FLcDNA=J013075G02;Manual Curation=April 20%2C 2020;Literature_PMID=32293285;Oryzabase=14685;Expression=AK099702;TENOR=Os01t0106900-01;KEGG=Os01t0106900-01 (EC:1.1.1.267)
Chr01	irgsp1_rep	five_prime_UTR	380489	380713	.	-	.	Parent=Os01t0106900-01
Chr01	irgsp1_rep	CDS	380398	380488	.	-	0	Parent=Os01t0106900-01
Chr01	irgsp1_rep	CDS	379206	379387	.	-	2	Parent=Os01t0106900-01
Chr01	irgsp1_rep	CDS	378841	378927	.	-	0	Parent=Os01t0106900-01
Chr01	irgsp1_rep	CDS	378616	378741	.	-	0	Parent=Os01t0106900-01
Chr01	irgsp1_rep	CDS	378471	378533	.	-	0	Parent=Os01t0106900-01
Chr01	irgsp1_rep	CDS	377617	377766	.	-	0	Parent=Os01t0106900-01
Chr01	irgsp1_rep	CDS	377314	377381	.	-	0	Parent=Os01t0106900-01
Chr01	irgsp1_rep	CDS	377123	377234	.	-	1	Parent=Os01t0106900-01
Chr01	irgsp1_rep	CDS	376938	377042	.	-	0	Parent=Os01t0106900-01
Chr01	irgsp1_rep	CDS	376647	376768	.	-	0	Parent=Os01t0106900-01
Chr01	irgsp1_rep	CDS	376003	376149	.	-	1	Parent=Os01t0106900-01
Chr01	irgsp1_rep	CDS	374980	375148	.	-	1	Parent=Os01t0106900-01
Chr01	irgsp1_rep	three_prime_UTR	374728	374979	.	-	.	Parent=Os01t0106900-01
Chr01	irgsp1_rep	mRNA	374752	380534	.	-	.	ID=Os01t0106900-02;Name=Os01t0106900-02;Locus_id=Os01g0106900;Oryzabase Gene Symbol Synonym(s)=OsDXR%2C DXR%2C OsIspC%2C IspC;Oryzabase Gene Name Synonym(s)=1-deoxy-D-xylulose 5-phosphate reductoisomerase%2C DXP reductoisomerase%2C deoxyxylulose 5-phosphate reductoisomerase;Note=Similar to 1-deoxy-D-xylulose 5-phosphate reductoisomerase (Fragment).;Transcript_evidence=AK059692 (DDBJ%2C Best hit);ORF_evidence=Q8W250 (UniProt);GO=Biological Process: isoprenoid biosynthetic process (GO:0008299),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: protein binding (GO:0005515),Molecular Function: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity (GO:0030604),Molecular Function: metal ion binding (GO:0046872),Molecular Function: NADPH binding (GO:0070402);InterPro=1-deoxy-D-xylulose 5-phosphate reductoisomerase (IPR003821),1-deoxy-D-xylulose 5-phosphate reductoisomerase%2C N-terminal (IPR013512),1-deoxy-D-xylulose 5-phosphate reductoisomerase%2C C-terminal (IPR013644),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-032-B08;Oryzabase=14685;Expression=AK059692;TENOR=Os01t0106900-02;KEGG=Os01t0106900-02 (EC:1.1.1.267)
Chr01	irgsp1_rep	five_prime_UTR	380489	380534	.	-	.	Parent=Os01t0106900-02
Chr01	irgsp1_rep	CDS	380398	380488	.	-	0	Parent=Os01t0106900-02
Chr01	irgsp1_rep	CDS	379206	379387	.	-	2	Parent=Os01t0106900-02
Chr01	irgsp1_rep	CDS	378841	378927	.	-	0	Parent=Os01t0106900-02
Chr01	irgsp1_rep	CDS	378616	378741	.	-	0	Parent=Os01t0106900-02
Chr01	irgsp1_rep	CDS	378471	378533	.	-	0	Parent=Os01t0106900-02
Chr01	irgsp1_rep	CDS	377617	377766	.	-	0	Parent=Os01t0106900-02
Chr01	irgsp1_rep	CDS	377314	377381	.	-	0	Parent=Os01t0106900-02
Chr01	irgsp1_rep	CDS	377123	377234	.	-	1	Parent=Os01t0106900-02
Chr01	irgsp1_rep	CDS	376938	377042	.	-	0	Parent=Os01t0106900-02
Chr01	irgsp1_rep	CDS	376647	376768	.	-	0	Parent=Os01t0106900-02
Chr01	irgsp1_rep	CDS	376003	376149	.	-	1	Parent=Os01t0106900-02
Chr01	irgsp1_rep	CDS	374980	375148	.	-	1	Parent=Os01t0106900-02
Chr01	irgsp1_rep	three_prime_UTR	374752	374979	.	-	.	Parent=Os01t0106900-02
Chr01	irgsp1_rep	mRNA	383250	386648	.	-	.	ID=Os01t0107000-01;Name=Os01t0107000-01;Locus_id=Os01g0107000;Note=Similar to peroxin Pex14.;Transcript_evidence=AK105067 (DDBJ%2C Best hit);ORF_evidence=NP_001150193.1 (RefSeq);GO=Cellular Component: peroxisome (GO:0005777),Cellular Component: membrane (GO:0016020);InterPro=Peroxisome membrane anchor protein Pex14p%2C N-terminal (IPR006785);NIAS_FLcDNA=001-044-H02;TENOR=Os01t0107000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	386549	386648	.	-	.	Parent=Os01t0107000-01
Chr01	irgsp1_rep	CDS	386515	386548	.	-	0	Parent=Os01t0107000-01
Chr01	irgsp1_rep	CDS	385724	385923	.	-	2	Parent=Os01t0107000-01
Chr01	irgsp1_rep	CDS	385580	385628	.	-	0	Parent=Os01t0107000-01
Chr01	irgsp1_rep	CDS	384934	385109	.	-	2	Parent=Os01t0107000-01
Chr01	irgsp1_rep	CDS	384646	384849	.	-	0	Parent=Os01t0107000-01
Chr01	irgsp1_rep	three_prime_UTR	384409	384645	.	-	.	Parent=Os01t0107000-01
Chr01	irgsp1_rep	three_prime_UTR	384302	384333	.	-	.	Parent=Os01t0107000-01
Chr01	irgsp1_rep	three_prime_UTR	384131	384176	.	-	.	Parent=Os01t0107000-01
Chr01	irgsp1_rep	three_prime_UTR	383950	384020	.	-	.	Parent=Os01t0107000-01
Chr01	irgsp1_rep	three_prime_UTR	383250	383864	.	-	.	Parent=Os01t0107000-01
Chr01	irgsp1_rep	mRNA	383335	386621	.	-	.	ID=Os01t0107000-02;Name=Os01t0107000-02;Locus_id=Os01g0107000;Note=Peroxisome membrane anchor protein Pex14p%2C N-terminal domain containing protein.;Transcript_evidence=AK066969 (DDBJ%2C Best hit);ORF_evidence=NP_001150193.1 (RefSeq);GO=Cellular Component: peroxisome (GO:0005777),Cellular Component: membrane (GO:0016020);InterPro=Peroxisome membrane anchor protein Pex14p%2C N-terminal (IPR006785);NIAS_FLcDNA=J013088I21;Expression=AK066969;TENOR=Os01t0107000-02;KEGG=Os01t0107000-02
Chr01	irgsp1_rep	five_prime_UTR	386549	386621	.	-	.	Parent=Os01t0107000-02
Chr01	irgsp1_rep	CDS	386515	386548	.	-	0	Parent=Os01t0107000-02
Chr01	irgsp1_rep	CDS	385724	385923	.	-	2	Parent=Os01t0107000-02
Chr01	irgsp1_rep	CDS	385580	385628	.	-	0	Parent=Os01t0107000-02
Chr01	irgsp1_rep	CDS	384934	385109	.	-	2	Parent=Os01t0107000-02
Chr01	irgsp1_rep	CDS	384666	384849	.	-	0	Parent=Os01t0107000-02
Chr01	irgsp1_rep	CDS	384409	384558	.	-	2	Parent=Os01t0107000-02
Chr01	irgsp1_rep	CDS	384302	384333	.	-	2	Parent=Os01t0107000-02
Chr01	irgsp1_rep	CDS	384131	384176	.	-	0	Parent=Os01t0107000-02
Chr01	irgsp1_rep	CDS	383950	384020	.	-	2	Parent=Os01t0107000-02
Chr01	irgsp1_rep	CDS	383451	383864	.	-	0	Parent=Os01t0107000-02
Chr01	irgsp1_rep	three_prime_UTR	383335	383450	.	-	.	Parent=Os01t0107000-02
Chr01	irgsp1_rep	mRNA	392083	392578	.	-	.	ID=Os01t0107400-01;Name=Os01t0107400-01;Locus_id=Os01g0107400;Note=Conserved hypothetical protein.;Transcript_evidence=AK059460 (DDBJ%2C Best hit);ORF_evidence=Q657Y4 (UniProt);NIAS_FLcDNA=001-028-C09;Expression=AK059460;TENOR=Os01t0107400-01;KEGG=Os01t0107400-01
Chr01	irgsp1_rep	five_prime_UTR	392578	392578	.	-	.	Parent=Os01t0107400-01
Chr01	irgsp1_rep	CDS	392398	392577	.	-	0	Parent=Os01t0107400-01
Chr01	irgsp1_rep	three_prime_UTR	392083	392397	.	-	.	Parent=Os01t0107400-01
Chr01	irgsp1_rep	mRNA	412625	415823	.	+	.	ID=Os01t0107700-01;Name=Os01t0107700-01;Locus_id=Os01g0107700;Note=Similar to LIMONENE cyclase like protein.;Transcript_evidence=AK070027 (DDBJ%2C Best hit);ORF_evidence=Q1EP17 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263),Twin-arginine translocation pathway%2C signal sequence (IPR006311);NIAS_FLcDNA=J023035K17;Expression=AK070027;TENOR=Os01t0107700-01;KEGG=Os01t0107700-01
Chr01	irgsp1_rep	five_prime_UTR	412625	412674	.	+	.	Parent=Os01t0107700-01
Chr01	irgsp1_rep	CDS	412675	412911	.	+	0	Parent=Os01t0107700-01
Chr01	irgsp1_rep	CDS	413097	413213	.	+	0	Parent=Os01t0107700-01
Chr01	irgsp1_rep	CDS	413401	413439	.	+	0	Parent=Os01t0107700-01
Chr01	irgsp1_rep	CDS	413513	413605	.	+	0	Parent=Os01t0107700-01
Chr01	irgsp1_rep	CDS	413703	413839	.	+	0	Parent=Os01t0107700-01
Chr01	irgsp1_rep	CDS	414322	414670	.	+	1	Parent=Os01t0107700-01
Chr01	irgsp1_rep	CDS	414815	415495	.	+	0	Parent=Os01t0107700-01
Chr01	irgsp1_rep	three_prime_UTR	415496	415823	.	+	.	Parent=Os01t0107700-01
Chr01	irgsp1_rep	mRNA	412636	415516	.	-	.	ID=Os01t0107750-00;Name=Os01t0107750-00;Locus_id=Os01g0107750;Note=Hypothetical protein.;Transcript_evidence=tplb0062k24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0107750-00
Chr01	irgsp1_rep	five_prime_UTR	414824	415516	.	-	.	Parent=Os01t0107750-00
Chr01	irgsp1_rep	five_prime_UTR	414333	414679	.	-	.	Parent=Os01t0107750-00
Chr01	irgsp1_rep	five_prime_UTR	413696	413845	.	-	.	Parent=Os01t0107750-00
Chr01	irgsp1_rep	five_prime_UTR	413518	413591	.	-	.	Parent=Os01t0107750-00
Chr01	irgsp1_rep	CDS	413474	413517	.	-	0	Parent=Os01t0107750-00
Chr01	irgsp1_rep	CDS	413120	413216	.	-	1	Parent=Os01t0107750-00
Chr01	irgsp1_rep	CDS	412636	412941	.	-	0	Parent=Os01t0107750-00
Chr01	irgsp1_rep	mRNA	416058	416130	.	+	.	ID=Os01t0107801-00;Name=Os01t0107801-00;Locus_id=Os01g0107801;Note=Non-protein coding transcript.;Transcript_evidence=X06283 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0107801-00
Chr01	irgsp1_rep	exon	416058	416130	.	+	.	Parent=Os01t0107801-00
Chr01	irgsp1_rep	mRNA	416264	420497	.	-	.	ID=Os01t0107900-01;Name=Os01t0107900-01;Locus_id=Os01g0107900;Note=Protein of unknown function DUF3506 domain containing protein.;Transcript_evidence=AK070363 (DDBJ%2C Best hit);ORF_evidence=A2WJS5 (UniProt);InterPro=Protein of unknown function DUF3506 (IPR021894);NIAS_FLcDNA=J023047F20;Expression=AK070363;TENOR=Os01t0107900-01;KEGG=Os01t0107900-01
Chr01	irgsp1_rep	five_prime_UTR	420403	420497	.	-	.	Parent=Os01t0107900-01
Chr01	irgsp1_rep	CDS	420157	420402	.	-	0	Parent=Os01t0107900-01
Chr01	irgsp1_rep	CDS	419941	420057	.	-	0	Parent=Os01t0107900-01
Chr01	irgsp1_rep	CDS	419757	419822	.	-	0	Parent=Os01t0107900-01
Chr01	irgsp1_rep	CDS	419575	419681	.	-	0	Parent=Os01t0107900-01
Chr01	irgsp1_rep	CDS	419408	419489	.	-	1	Parent=Os01t0107900-01
Chr01	irgsp1_rep	CDS	418567	419289	.	-	0	Parent=Os01t0107900-01
Chr01	irgsp1_rep	CDS	418147	418267	.	-	0	Parent=Os01t0107900-01
Chr01	irgsp1_rep	CDS	417920	418071	.	-	2	Parent=Os01t0107900-01
Chr01	irgsp1_rep	CDS	417776	417850	.	-	0	Parent=Os01t0107900-01
Chr01	irgsp1_rep	CDS	417510	417602	.	-	0	Parent=Os01t0107900-01
Chr01	irgsp1_rep	CDS	416666	416767	.	-	0	Parent=Os01t0107900-01
Chr01	irgsp1_rep	three_prime_UTR	416264	416665	.	-	.	Parent=Os01t0107900-01
Chr01	irgsp1_rep	mRNA	416267	418797	.	-	.	ID=Os01t0107900-02;Name=Os01t0107900-02;Locus_id=Os01g0107900;Note=Protein of unknown function DUF3506 domain containing protein.;Transcript_evidence=AK058708 (DDBJ%2C Best hit);ORF_evidence=Q657X6 (UniProt);InterPro=Protein of unknown function DUF3506 (IPR021894);NIAS_FLcDNA=001-019-D03;Expression=AK058708;TENOR=Os01t0107900-02;KEGG=Os01t0107900-02
Chr01	irgsp1_rep	CDS	418567	418797	.	-	0	Parent=Os01t0107900-02
Chr01	irgsp1_rep	CDS	418147	418267	.	-	0	Parent=Os01t0107900-02
Chr01	irgsp1_rep	CDS	417920	418071	.	-	2	Parent=Os01t0107900-02
Chr01	irgsp1_rep	CDS	417776	417850	.	-	0	Parent=Os01t0107900-02
Chr01	irgsp1_rep	CDS	417510	417602	.	-	0	Parent=Os01t0107900-02
Chr01	irgsp1_rep	CDS	416666	416767	.	-	0	Parent=Os01t0107900-02
Chr01	irgsp1_rep	three_prime_UTR	416267	416665	.	-	.	Parent=Os01t0107900-02
Chr01	irgsp1_rep	mRNA	422539	431217	.	+	.	ID=Os01t0108000-01;Name=Os01t0108000-01;Locus_id=Os01g0108000;Note=Conserved hypothetical protein.;Transcript_evidence=AK100813 (DDBJ%2C Best hit);ORF_evidence=A2WJS6 (UniProt);NIAS_FLcDNA=J023121P16;Expression=AK100813;TENOR=Os01t0108000-01;KEGG=Os01t0108000-01
Chr01	irgsp1_rep	five_prime_UTR	422539	422598	.	+	.	Parent=Os01t0108000-01
Chr01	irgsp1_rep	CDS	422599	422748	.	+	0	Parent=Os01t0108000-01
Chr01	irgsp1_rep	CDS	422910	422972	.	+	0	Parent=Os01t0108000-01
Chr01	irgsp1_rep	CDS	423069	423379	.	+	0	Parent=Os01t0108000-01
Chr01	irgsp1_rep	CDS	423524	423620	.	+	1	Parent=Os01t0108000-01
Chr01	irgsp1_rep	CDS	423697	423774	.	+	0	Parent=Os01t0108000-01
Chr01	irgsp1_rep	CDS	423871	423930	.	+	0	Parent=Os01t0108000-01
Chr01	irgsp1_rep	CDS	424019	424123	.	+	0	Parent=Os01t0108000-01
Chr01	irgsp1_rep	CDS	424743	424856	.	+	0	Parent=Os01t0108000-01
Chr01	irgsp1_rep	CDS	425145	425186	.	+	0	Parent=Os01t0108000-01
Chr01	irgsp1_rep	CDS	425380	425496	.	+	0	Parent=Os01t0108000-01
Chr01	irgsp1_rep	CDS	425568	425755	.	+	0	Parent=Os01t0108000-01
Chr01	irgsp1_rep	CDS	426514	426785	.	+	1	Parent=Os01t0108000-01
Chr01	irgsp1_rep	CDS	426869	426990	.	+	2	Parent=Os01t0108000-01
Chr01	irgsp1_rep	CDS	427118	427160	.	+	0	Parent=Os01t0108000-01
Chr01	irgsp1_rep	CDS	427265	427356	.	+	2	Parent=Os01t0108000-01
Chr01	irgsp1_rep	CDS	428331	428379	.	+	0	Parent=Os01t0108000-01
Chr01	irgsp1_rep	CDS	428623	428693	.	+	2	Parent=Os01t0108000-01
Chr01	irgsp1_rep	CDS	428793	428912	.	+	0	Parent=Os01t0108000-01
Chr01	irgsp1_rep	CDS	429586	429674	.	+	0	Parent=Os01t0108000-01
Chr01	irgsp1_rep	CDS	430266	430311	.	+	1	Parent=Os01t0108000-01
Chr01	irgsp1_rep	CDS	430926	430973	.	+	0	Parent=Os01t0108000-01
Chr01	irgsp1_rep	three_prime_UTR	430974	431217	.	+	.	Parent=Os01t0108000-01
Chr01	irgsp1_rep	mRNA	441203	448951	.	+	.	ID=Os01t0108200-01;Name=Os01t0108200-01;Locus_id=Os01g0108200;Oryzabase Gene Symbol Synonym(s)=OsPOP1%2C POP1;Oryzabase Gene Name Synonym(s)=Prolyl endopeptidase%2C Prolyl Oligopeptidase 1%2C PROLYL OLIGOPEPTIDASE 1;Note=Similar to Prolyl endopeptidase (EC 3.4.21.26) (Post-proline cleaving enzyme) (PE).;Transcript_evidence=BT065395 (DDBJ);ORF_evidence=B6U134 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: serine-type peptidase activity (GO:0008236),Molecular Function: serine-type exopeptidase activity (GO:0070008);InterPro=Peptidase S9%2C prolyl oligopeptidase%2C catalytic domain (IPR001375),Peptidase S9A%2C prolyl oligopeptidase (IPR002470),Peptidase S9A/B/C%2C oligopeptidase%2C N-terminal beta-propeller (IPR004106),Peptidase S9A%2C oligopeptidase%2C N-terminal (IPR023302);Oryzabase=17649;TENOR=Os01t0108200-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	441203	441327	.	+	.	Parent=Os01t0108200-01
Chr01	irgsp1_rep	CDS	441328	441437	.	+	0	Parent=Os01t0108200-01
Chr01	irgsp1_rep	CDS	441514	441733	.	+	1	Parent=Os01t0108200-01
Chr01	irgsp1_rep	CDS	442605	442805	.	+	0	Parent=Os01t0108200-01
Chr01	irgsp1_rep	CDS	442915	442985	.	+	0	Parent=Os01t0108200-01
Chr01	irgsp1_rep	CDS	443058	443217	.	+	1	Parent=Os01t0108200-01
Chr01	irgsp1_rep	CDS	445166	445759	.	+	0	Parent=Os01t0108200-01
Chr01	irgsp1_rep	CDS	445869	446249	.	+	0	Parent=Os01t0108200-01
Chr01	irgsp1_rep	CDS	446573	446648	.	+	0	Parent=Os01t0108200-01
Chr01	irgsp1_rep	CDS	446736	446799	.	+	2	Parent=Os01t0108200-01
Chr01	irgsp1_rep	CDS	447334	447469	.	+	1	Parent=Os01t0108200-01
Chr01	irgsp1_rep	CDS	448666	448779	.	+	0	Parent=Os01t0108200-01
Chr01	irgsp1_rep	CDS	448851	448916	.	+	0	Parent=Os01t0108200-01
Chr01	irgsp1_rep	three_prime_UTR	448917	448951	.	+	.	Parent=Os01t0108200-01
Chr01	irgsp1_rep	mRNA	455707	457425	.	+	.	ID=Os01t0108400-00;Name=Os01t0108400-00;Locus_id=Os01g0108400;Oryzabase Gene Symbol Synonym(s)=OsbHLH187%2C bHLH187;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 187;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=AK353822 (DDBJ);ORF_evidence=NP_001041788.2 (RefSeq);InterPro=Helix-loop-helix DNA-binding (IPR011598);Oryzabase=22857;TENOR=Os01t0108400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	455707	455907	.	+	0	Parent=Os01t0108400-00
Chr01	irgsp1_rep	CDS	456682	457104	.	+	0	Parent=Os01t0108400-00
Chr01	irgsp1_rep	CDS	457278	457343	.	+	0	Parent=Os01t0108400-00
Chr01	irgsp1_rep	three_prime_UTR	457344	457425	.	+	.	Parent=Os01t0108400-00
Chr01	irgsp1_rep	mRNA	460177	461371	.	+	.	ID=Os01t0108500-00;Name=Os01t0108500-00;Locus_id=Os01g0108500;Note=Protein of unknown function DUF3778 domain containing protein.;Transcript_evidence=AK071488 (DDBJ%2C Secondary hit);ORF_evidence=NP_001172123.1 (RefSeq);InterPro=Protein of unknown function DUF3778 (IPR022256);Expression=AK071488;TENOR=Os01t0108500-00;KEGG=Os01t0108500-00
Chr01	irgsp1_rep	five_prime_UTR	460177	460406	.	+	.	Parent=Os01t0108500-00
Chr01	irgsp1_rep	CDS	460407	461327	.	+	0	Parent=Os01t0108500-00
Chr01	irgsp1_rep	three_prime_UTR	461328	461371	.	+	.	Parent=Os01t0108500-00
Chr01	irgsp1_rep	mRNA	478384	481099	.	+	.	ID=Os01t0108600-01;Name=Os01t0108600-01;Locus_id=Os01g0108600;Note=Basic helix-loop-helix dimerisation region bHLH domain containing protein.;Transcript_evidence=AK070332 (DDBJ%2C Best hit);ORF_evidence=Q8W0N9 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J023050C11;Expression=AK070332;TENOR=Os01t0108600-01;KEGG=Os01t0108600-01
Chr01	irgsp1_rep	five_prime_UTR	478384	478552	.	+	.	Parent=Os01t0108600-01
Chr01	irgsp1_rep	CDS	478553	478816	.	+	0	Parent=Os01t0108600-01
Chr01	irgsp1_rep	CDS	480312	480413	.	+	0	Parent=Os01t0108600-01
Chr01	irgsp1_rep	CDS	480470	480754	.	+	0	Parent=Os01t0108600-01
Chr01	irgsp1_rep	three_prime_UTR	480755	481099	.	+	.	Parent=Os01t0108600-01
Chr01	irgsp1_rep	mRNA	478488	481165	.	+	.	ID=Os01t0108600-02;Name=Os01t0108600-02;Locus_id=Os01g0108600;Note=Hypothetical conserved gene.;Transcript_evidence=AK109432 (DDBJ%2C Best hit);ORF_evidence=B8ACU8 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=006-308-A12;Expression=AK109432;TENOR=Os01t0108600-02;KEGG=Os01t0108600-02
Chr01	irgsp1_rep	five_prime_UTR	478488	478552	.	+	.	Parent=Os01t0108600-02
Chr01	irgsp1_rep	CDS	478553	478816	.	+	0	Parent=Os01t0108600-02
Chr01	irgsp1_rep	CDS	480312	480722	.	+	0	Parent=Os01t0108600-02
Chr01	irgsp1_rep	three_prime_UTR	480723	481165	.	+	.	Parent=Os01t0108600-02
Chr01	irgsp1_rep	mRNA	482332	482955	.	+	.	ID=Os01t0108700-01;Name=Os01t0108700-01;Locus_id=Os01g0108700;Note=Hypothetical protein.;Transcript_evidence=AK111316 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-181-C09;Expression=AK111316;TENOR=Os01t0108700-01;KEGG=Os01t0108700-01
Chr01	irgsp1_rep	five_prime_UTR	482332	482410	.	+	.	Parent=Os01t0108700-01
Chr01	irgsp1_rep	CDS	482411	482875	.	+	0	Parent=Os01t0108700-01
Chr01	irgsp1_rep	three_prime_UTR	482876	482955	.	+	.	Parent=Os01t0108700-01
Chr01	irgsp1_rep	mRNA	483887	486492	.	+	.	ID=Os01t0108800-01;Name=Os01t0108800-01;Locus_id=Os01g0108800;Note=Protein of unknown function DUF936%2C plant family protein.;Transcript_evidence=AK102103 (DDBJ%2C Best hit);ORF_evidence=B8ACV0 (UniProt);InterPro=Protein of unknown function DUF936%2C plant (IPR010341);NIAS_FLcDNA=J033084B06;Expression=AK102103;TENOR=Os01t0108800-01;KEGG=Os01t0108800-01
Chr01	irgsp1_rep	five_prime_UTR	483887	484013	.	+	.	Parent=Os01t0108800-01
Chr01	irgsp1_rep	five_prime_UTR	484101	484115	.	+	.	Parent=Os01t0108800-01
Chr01	irgsp1_rep	CDS	484116	484811	.	+	0	Parent=Os01t0108800-01
Chr01	irgsp1_rep	three_prime_UTR	484812	485262	.	+	.	Parent=Os01t0108800-01
Chr01	irgsp1_rep	three_prime_UTR	485410	486492	.	+	.	Parent=Os01t0108800-01
Chr01	irgsp1_rep	mRNA	495711	497253	.	-	.	ID=Os01t0109000-01;Name=Os01t0109000-01;Locus_id=Os01g0109000;Note=Similar to Late embryogenesis abundant protein%2C group 3.;Transcript_evidence=AK120074 (DDBJ%2C Best hit);ORF_evidence=A2Y720 (UniProt);NIAS_FLcDNA=J013007J15;TENOR=Os01t0109000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	496377	497253	.	-	.	Parent=Os01t0109000-01
Chr01	irgsp1_rep	five_prime_UTR	496226	496291	.	-	.	Parent=Os01t0109000-01
Chr01	irgsp1_rep	CDS	495959	496225	.	-	0	Parent=Os01t0109000-01
Chr01	irgsp1_rep	three_prime_UTR	495711	495958	.	-	.	Parent=Os01t0109000-01
Chr01	irgsp1_rep	mRNA	498612	506251	.	-	.	ID=Os01t0109201-01;Name=Os01t0109201-01;Locus_id=Os01g0109201;Note=Hypothetical gene.;Transcript_evidence=AK241068 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065066G22;TENOR=Os01t0109201-01;KEGG=Os01t0109201-01
Chr01	irgsp1_rep	five_prime_UTR	505705	506251	.	-	.	Parent=Os01t0109201-01
Chr01	irgsp1_rep	five_prime_UTR	505533	505614	.	-	.	Parent=Os01t0109201-01
Chr01	irgsp1_rep	CDS	505504	505532	.	-	0	Parent=Os01t0109201-01
Chr01	irgsp1_rep	CDS	505411	505426	.	-	1	Parent=Os01t0109201-01
Chr01	irgsp1_rep	CDS	505215	505306	.	-	0	Parent=Os01t0109201-01
Chr01	irgsp1_rep	CDS	505048	505128	.	-	1	Parent=Os01t0109201-01
Chr01	irgsp1_rep	CDS	504874	504880	.	-	1	Parent=Os01t0109201-01
Chr01	irgsp1_rep	three_prime_UTR	504779	504873	.	-	.	Parent=Os01t0109201-01
Chr01	irgsp1_rep	three_prime_UTR	504606	504698	.	-	.	Parent=Os01t0109201-01
Chr01	irgsp1_rep	three_prime_UTR	504439	504512	.	-	.	Parent=Os01t0109201-01
Chr01	irgsp1_rep	three_prime_UTR	504285	504340	.	-	.	Parent=Os01t0109201-01
Chr01	irgsp1_rep	three_prime_UTR	503547	503609	.	-	.	Parent=Os01t0109201-01
Chr01	irgsp1_rep	three_prime_UTR	503383	503450	.	-	.	Parent=Os01t0109201-01
Chr01	irgsp1_rep	three_prime_UTR	503251	503289	.	-	.	Parent=Os01t0109201-01
Chr01	irgsp1_rep	three_prime_UTR	502910	503000	.	-	.	Parent=Os01t0109201-01
Chr01	irgsp1_rep	three_prime_UTR	502475	502559	.	-	.	Parent=Os01t0109201-01
Chr01	irgsp1_rep	three_prime_UTR	502356	502407	.	-	.	Parent=Os01t0109201-01
Chr01	irgsp1_rep	three_prime_UTR	502156	502262	.	-	.	Parent=Os01t0109201-01
Chr01	irgsp1_rep	three_prime_UTR	500576	500598	.	-	.	Parent=Os01t0109201-01
Chr01	irgsp1_rep	three_prime_UTR	500444	500481	.	-	.	Parent=Os01t0109201-01
Chr01	irgsp1_rep	three_prime_UTR	498612	498922	.	-	.	Parent=Os01t0109201-01
Chr01	irgsp1_rep	mRNA	498668	506233	.	+	.	ID=Os01t0109300-01;Name=Os01t0109300-01;Locus_id=Os01g0109300;CGSNL Gene Symbol=WFSL1;CGSNL Gene Name=WHITE FINE STRIPE LEAF 1;Oryzabase Gene Name Synonym(s)=white fine stripe leaf 1;Note=Similar to predicted protein.;Transcript_evidence=AK242985 (DDBJ%2C Best hit);ORF_evidence=XP_002868662.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphoric diester hydrolase activity (GO:0008081),Molecular Function: metal ion binding (GO:0046872);InterPro=Metal-dependent phosphohydrolase%2C HD domain (IPR003607),Metal-dependent phosphohydrolase%2C HD subdomain (IPR006674),HD domain (IPR023279);NIAS_FLcDNA=J090094N05;Oryzabase=21746;TENOR=Os01t0109300-01;KEGG=Os01t0109300-01
Chr01	irgsp1_rep	five_prime_UTR	498668	498727	.	+	.	Parent=Os01t0109300-01
Chr01	irgsp1_rep	CDS	498728	498922	.	+	0	Parent=Os01t0109300-01
Chr01	irgsp1_rep	CDS	500444	500481	.	+	0	Parent=Os01t0109300-01
Chr01	irgsp1_rep	CDS	500576	500598	.	+	1	Parent=Os01t0109300-01
Chr01	irgsp1_rep	CDS	502156	502262	.	+	2	Parent=Os01t0109300-01
Chr01	irgsp1_rep	CDS	502356	502407	.	+	0	Parent=Os01t0109300-01
Chr01	irgsp1_rep	CDS	502475	502559	.	+	2	Parent=Os01t0109300-01
Chr01	irgsp1_rep	CDS	502910	503000	.	+	1	Parent=Os01t0109300-01
Chr01	irgsp1_rep	CDS	503251	503289	.	+	0	Parent=Os01t0109300-01
Chr01	irgsp1_rep	CDS	503383	503450	.	+	0	Parent=Os01t0109300-01
Chr01	irgsp1_rep	CDS	503547	503609	.	+	1	Parent=Os01t0109300-01
Chr01	irgsp1_rep	CDS	504285	504340	.	+	1	Parent=Os01t0109300-01
Chr01	irgsp1_rep	CDS	504439	504512	.	+	2	Parent=Os01t0109300-01
Chr01	irgsp1_rep	CDS	504606	504698	.	+	0	Parent=Os01t0109300-01
Chr01	irgsp1_rep	CDS	504779	504880	.	+	0	Parent=Os01t0109300-01
Chr01	irgsp1_rep	CDS	505048	505128	.	+	0	Parent=Os01t0109300-01
Chr01	irgsp1_rep	CDS	505215	505306	.	+	0	Parent=Os01t0109300-01
Chr01	irgsp1_rep	CDS	505411	505426	.	+	1	Parent=Os01t0109300-01
Chr01	irgsp1_rep	CDS	505504	505614	.	+	0	Parent=Os01t0109300-01
Chr01	irgsp1_rep	CDS	505705	505809	.	+	0	Parent=Os01t0109300-01
Chr01	irgsp1_rep	three_prime_UTR	505810	506233	.	+	.	Parent=Os01t0109300-01
Chr01	irgsp1_rep	mRNA	508687	509191	.	+	.	ID=Os01t0109366-00;Name=Os01t0109366-00;Locus_id=Os01g0109366;Note=Hypothetical conserved gene.;Transcript_evidence=CT834957 (DDBJ%2C Best hit);ORF_evidence=B9FQ15 (UniProt);TENOR=Os01t0109366-00;KEGG=Os01t0109366-00
Chr01	irgsp1_rep	five_prime_UTR	508687	508687	.	+	.	Parent=Os01t0109366-00
Chr01	irgsp1_rep	CDS	508688	509008	.	+	0	Parent=Os01t0109366-00
Chr01	irgsp1_rep	three_prime_UTR	509009	509191	.	+	.	Parent=Os01t0109366-00
Chr01	irgsp1_rep	mRNA	509226	509803	.	-	.	ID=Os01t0109432-00;Name=Os01t0109432-00;Locus_id=Os01g0109432;Note=Hypothetical gene.;Transcript_evidence=CT835511 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os01t0109432-00;KEGG=Os01t0109432-00
Chr01	irgsp1_rep	five_prime_UTR	509692	509803	.	-	.	Parent=Os01t0109432-00
Chr01	irgsp1_rep	CDS	509446	509691	.	-	0	Parent=Os01t0109432-00
Chr01	irgsp1_rep	three_prime_UTR	509226	509445	.	-	.	Parent=Os01t0109432-00
Chr01	irgsp1_rep	mRNA	510752	512142	.	+	.	ID=Os01t0109500-01;Name=Os01t0109500-01;Locus_id=Os01g0109500;Note=Conserved hypothetical protein.;Transcript_evidence=AK058636 (DDBJ%2C Best hit);ORF_evidence=A2WJT4 (UniProt);NIAS_FLcDNA=001-018-D05;Expression=AK058636;TENOR=Os01t0109500-01;KEGG=Os01t0109500-01
Chr01	irgsp1_rep	five_prime_UTR	510752	510845	.	+	.	Parent=Os01t0109500-01
Chr01	irgsp1_rep	CDS	510846	511556	.	+	0	Parent=Os01t0109500-01
Chr01	irgsp1_rep	three_prime_UTR	511557	511596	.	+	.	Parent=Os01t0109500-01
Chr01	irgsp1_rep	three_prime_UTR	511762	512142	.	+	.	Parent=Os01t0109500-01
Chr01	irgsp1_rep	mRNA	513890	522448	.	-	.	ID=Os01t0109700-01;Name=Os01t0109700-01;Locus_id=Os01g0109700;Note=Similar to Paired amphipathic helix repeat-containing protein / transcription regulator-related.;Transcript_evidence=AK121497 (DDBJ%2C Best hit);ORF_evidence=Q1EPA1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634);InterPro=Paired amphipathic helix (IPR003822),Histone deacetylase interacting (IPR013194);NIAS_FLcDNA=J033007H10;TENOR=Os01t0109700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	522423	522448	.	-	0	Parent=Os01t0109700-01
Chr01	irgsp1_rep	CDS	522142	522310	.	-	1	Parent=Os01t0109700-01
Chr01	irgsp1_rep	CDS	521940	522038	.	-	0	Parent=Os01t0109700-01
Chr01	irgsp1_rep	CDS	521692	521850	.	-	0	Parent=Os01t0109700-01
Chr01	irgsp1_rep	CDS	520871	521153	.	-	0	Parent=Os01t0109700-01
Chr01	irgsp1_rep	CDS	520511	520644	.	-	2	Parent=Os01t0109700-01
Chr01	irgsp1_rep	CDS	520324	520399	.	-	0	Parent=Os01t0109700-01
Chr01	irgsp1_rep	CDS	520186	520215	.	-	2	Parent=Os01t0109700-01
Chr01	irgsp1_rep	CDS	519880	520100	.	-	2	Parent=Os01t0109700-01
Chr01	irgsp1_rep	CDS	519645	519799	.	-	0	Parent=Os01t0109700-01
Chr01	irgsp1_rep	CDS	518231	518358	.	-	1	Parent=Os01t0109700-01
Chr01	irgsp1_rep	CDS	517874	518128	.	-	2	Parent=Os01t0109700-01
Chr01	irgsp1_rep	CDS	517112	517777	.	-	2	Parent=Os01t0109700-01
Chr01	irgsp1_rep	CDS	516953	517038	.	-	2	Parent=Os01t0109700-01
Chr01	irgsp1_rep	CDS	515995	516666	.	-	0	Parent=Os01t0109700-01
Chr01	irgsp1_rep	CDS	515823	515923	.	-	0	Parent=Os01t0109700-01
Chr01	irgsp1_rep	CDS	515598	515736	.	-	1	Parent=Os01t0109700-01
Chr01	irgsp1_rep	CDS	515369	515521	.	-	0	Parent=Os01t0109700-01
Chr01	irgsp1_rep	CDS	515000	515163	.	-	0	Parent=Os01t0109700-01
Chr01	irgsp1_rep	CDS	514809	514920	.	-	1	Parent=Os01t0109700-01
Chr01	irgsp1_rep	CDS	514578	514730	.	-	0	Parent=Os01t0109700-01
Chr01	irgsp1_rep	three_prime_UTR	514558	514577	.	-	.	Parent=Os01t0109700-01
Chr01	irgsp1_rep	three_prime_UTR	513890	514458	.	-	.	Parent=Os01t0109700-01
Chr01	irgsp1_rep	mRNA	524671	527980	.	-	.	ID=Os01t0109750-01;Name=Os01t0109750-01;Locus_id=Os01g0109750;Note=Paired amphipathic helix domain containing protein.;Transcript_evidence=AK242711 (DDBJ%2C Best hit);ORF_evidence=NP_001172127.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634);InterPro=Paired amphipathic helix (IPR003822);NIAS_FLcDNA=J090041H01;TENOR=Os01t0109750-01;KEGG=Os01t0109750-01
Chr01	irgsp1_rep	five_prime_UTR	527871	527980	.	-	.	Parent=Os01t0109750-01
Chr01	irgsp1_rep	five_prime_UTR	526764	526784	.	-	.	Parent=Os01t0109750-01
Chr01	irgsp1_rep	CDS	526641	526763	.	-	0	Parent=Os01t0109750-01
Chr01	irgsp1_rep	CDS	525389	525469	.	-	0	Parent=Os01t0109750-01
Chr01	irgsp1_rep	CDS	525101	525310	.	-	0	Parent=Os01t0109750-01
Chr01	irgsp1_rep	three_prime_UTR	524671	525100	.	-	.	Parent=Os01t0109750-01
Chr01	irgsp1_rep	mRNA	536973	538644	.	-	.	ID=Os01t0110050-01;Name=Os01t0110050-01;Locus_id=Os01g0110050;RAP-DB Gene Symbol Synonym(s)=PHO1%3B1 CIS-NAT%2C OsPHO1%3B1 cis-NAT;RAP-DB Gene Name Synonym(s)=PHOSPHATE TRANSPORTER 1%3B1 CIS-NATURAL ANTISENSE TRANSCRIPT;CGSNL Gene Symbol=PHO1%3B1 CIS-NAT;CGSNL Gene Name=PHOSPHATE TRANSPORTER 1%3B1 CIS-NATURAL ANTISENSE TRANSCRIPT;Oryzabase Gene Symbol Synonym(s)=OsPHO1%3B1 cis-NAT;Note=Pi homeostasis;Transcript_evidence=AK241522 (Genbank);ORF_evidence=Inferred from literature;NIAS_FLcDNA=J065170O10;Manual Curation=April 13%2C 2010;Literature_PMID=20081045;Oryzabase=10429;TENOR=Os01t0110050-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	538499	538644	.	-	.	Parent=Os01t0110050-01
Chr01	irgsp1_rep	CDS	538226	538498	.	-	0	Parent=Os01t0110050-01
Chr01	irgsp1_rep	CDS	537917	538054	.	-	0	Parent=Os01t0110050-01
Chr01	irgsp1_rep	three_prime_UTR	537786	537916	.	-	.	Parent=Os01t0110050-01
Chr01	irgsp1_rep	three_prime_UTR	536973	537700	.	-	.	Parent=Os01t0110050-01
Chr01	irgsp1_rep	mRNA	537710	543354	.	+	.	ID=Os01t0110100-01;Name=Os01t0110100-01;Locus_id=Os01g0110100;RAP-DB Gene Symbol Synonym(s)=PHO1%3B1%2C OsPHO1%3B1;RAP-DB Gene Name Synonym(s)=PHOSPHATE TRANSPORTER 1%3B1;CGSNL Gene Symbol=PHO1%3B1;CGSNL Gene Name=PHOSPHATE TRANSPORTER 1%3B1;Oryzabase Gene Symbol Synonym(s)=OsPHO1%3B1;Note=Phosphate (Pi) transporter%2C Pi homeostasis;Transcript_evidence=AK242852 (Genbank);ORF_evidence=B9EYU4 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=SPX%2C N-terminal (IPR004331),EXS%2C C-terminal (IPR004342);NIAS_FLcDNA=J090073D03;Manual Curation=April 12%2C 2010;Literature_PMID=20081045;Oryzabase=10424;TENOR=Os01t0110100-01;KEGG=Os01t0110100-01
Chr01	irgsp1_rep	five_prime_UTR	537710	537786	.	+	.	Parent=Os01t0110100-01
Chr01	irgsp1_rep	CDS	537787	538068	.	+	0	Parent=Os01t0110100-01
Chr01	irgsp1_rep	CDS	538193	538493	.	+	0	Parent=Os01t0110100-01
Chr01	irgsp1_rep	CDS	539848	540241	.	+	2	Parent=Os01t0110100-01
Chr01	irgsp1_rep	CDS	540345	540595	.	+	1	Parent=Os01t0110100-01
Chr01	irgsp1_rep	CDS	540678	540798	.	+	2	Parent=Os01t0110100-01
Chr01	irgsp1_rep	CDS	540893	541133	.	+	1	Parent=Os01t0110100-01
Chr01	irgsp1_rep	CDS	541341	541445	.	+	0	Parent=Os01t0110100-01
Chr01	irgsp1_rep	CDS	541571	541615	.	+	0	Parent=Os01t0110100-01
Chr01	irgsp1_rep	CDS	541738	541890	.	+	0	Parent=Os01t0110100-01
Chr01	irgsp1_rep	CDS	542132	542410	.	+	0	Parent=Os01t0110100-01
Chr01	irgsp1_rep	CDS	542705	542841	.	+	0	Parent=Os01t0110100-01
Chr01	irgsp1_rep	CDS	542975	543065	.	+	1	Parent=Os01t0110100-01
Chr01	irgsp1_rep	three_prime_UTR	543066	543354	.	+	.	Parent=Os01t0110100-01
Chr01	irgsp1_rep	mRNA	543425	544510	.	-	.	ID=Os01t0110200-01;Name=Os01t0110200-01;Locus_id=Os01g0110200;CGSNL Gene Symbol=AGP12;CGSNL Gene Name=ARABINOGALACTAN PROTEIN 12;Oryzabase Gene Symbol Synonym(s)=OsAGP12;Oryzabase Gene Name Synonym(s)=Arabinogalactan protein 12;Note=Conserved hypothetical protein.;Transcript_evidence=AK109646 (DDBJ%2C Best hit);ORF_evidence=A2WJU1 (UniProt);NIAS_FLcDNA=002-138-H09;Oryzabase=11305;Expression=AK109646;TENOR=Os01t0110200-01;KEGG=Os01t0110200-01
Chr01	irgsp1_rep	five_prime_UTR	544442	544510	.	-	.	Parent=Os01t0110200-01
Chr01	irgsp1_rep	CDS	543803	544441	.	-	0	Parent=Os01t0110200-01
Chr01	irgsp1_rep	CDS	543603	543686	.	-	0	Parent=Os01t0110200-01
Chr01	irgsp1_rep	three_prime_UTR	543425	543602	.	-	.	Parent=Os01t0110200-01
Chr01	irgsp1_rep	mRNA	549157	552574	.	+	.	ID=Os01t0110400-01;Name=Os01t0110400-01;Locus_id=Os01g0110400;Note=Similar to Acetyl-CoA C-acetyltransferase.;Transcript_evidence=AK101017 (DDBJ%2C Best hit),AK103194 (DDBJ%2C Best hit);ORF_evidence=B4FYM0 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Thiolase (IPR002155),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039),Thiolase%2C active site (IPR020610),Thiolase%2C conserved site (IPR020613),Thiolase%2C acyl-enzyme intermediate active site (IPR020615),Thiolase%2C N-terminal (IPR020616),Thiolase%2C C-terminal (IPR020617);NIAS_FLcDNA=J023149F12,J033121P11;Expression=AK101017;TENOR=Os01t0110400-01;KEGG=Os01t0110400-01 (EC:2.3.1.9)
Chr01	irgsp1_rep	five_prime_UTR	549157	549254	.	+	.	Parent=Os01t0110400-01
Chr01	irgsp1_rep	CDS	549255	549399	.	+	0	Parent=Os01t0110400-01
Chr01	irgsp1_rep	CDS	549478	549651	.	+	2	Parent=Os01t0110400-01
Chr01	irgsp1_rep	CDS	549787	549892	.	+	2	Parent=Os01t0110400-01
Chr01	irgsp1_rep	CDS	549992	550130	.	+	1	Parent=Os01t0110400-01
Chr01	irgsp1_rep	CDS	550216	550293	.	+	0	Parent=Os01t0110400-01
Chr01	irgsp1_rep	CDS	550395	550460	.	+	0	Parent=Os01t0110400-01
Chr01	irgsp1_rep	CDS	550690	550772	.	+	0	Parent=Os01t0110400-01
Chr01	irgsp1_rep	CDS	551102	551201	.	+	1	Parent=Os01t0110400-01
Chr01	irgsp1_rep	CDS	551417	551527	.	+	0	Parent=Os01t0110400-01
Chr01	irgsp1_rep	CDS	551614	551655	.	+	0	Parent=Os01t0110400-01
Chr01	irgsp1_rep	CDS	551739	551825	.	+	0	Parent=Os01t0110400-01
Chr01	irgsp1_rep	CDS	552033	552118	.	+	0	Parent=Os01t0110400-01
Chr01	irgsp1_rep	CDS	552333	552366	.	+	1	Parent=Os01t0110400-01
Chr01	irgsp1_rep	three_prime_UTR	552367	552574	.	+	.	Parent=Os01t0110400-01
Chr01	irgsp1_rep	mRNA	554025	558015	.	-	.	ID=Os01t0110500-01;Name=Os01t0110500-01;Locus_id=Os01g0110500;Oryzabase Gene Name Synonym(s)=Extensin family protein;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK101096 (DDBJ%2C Best hit);ORF_evidence=Q1EP18 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J033024N16;Oryzabase=21935;Expression=AK101096;TENOR=Os01t0110500-01;KEGG=Os01t0110500-01
Chr01	irgsp1_rep	five_prime_UTR	557306	558015	.	-	.	Parent=Os01t0110500-01
Chr01	irgsp1_rep	CDS	556351	557305	.	-	0	Parent=Os01t0110500-01
Chr01	irgsp1_rep	CDS	555854	556237	.	-	2	Parent=Os01t0110500-01
Chr01	irgsp1_rep	CDS	555676	555762	.	-	2	Parent=Os01t0110500-01
Chr01	irgsp1_rep	CDS	555525	555595	.	-	2	Parent=Os01t0110500-01
Chr01	irgsp1_rep	CDS	555368	555444	.	-	0	Parent=Os01t0110500-01
Chr01	irgsp1_rep	CDS	555136	555283	.	-	1	Parent=Os01t0110500-01
Chr01	irgsp1_rep	CDS	554589	554750	.	-	0	Parent=Os01t0110500-01
Chr01	irgsp1_rep	CDS	554300	554512	.	-	0	Parent=Os01t0110500-01
Chr01	irgsp1_rep	three_prime_UTR	554025	554299	.	-	.	Parent=Os01t0110500-01
Chr01	irgsp1_rep	mRNA	554334	557257	.	+	.	ID=Os01t0110600-00;Name=Os01t0110600-00;Locus_id=Os01g0110600;Note=Hypothetical protein.;Transcript_evidence=tplb0028p02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0110600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	554334	554510	.	+	.	Parent=Os01t0110600-00
Chr01	irgsp1_rep	five_prime_UTR	554587	554733	.	+	.	Parent=Os01t0110600-00
Chr01	irgsp1_rep	five_prime_UTR	555119	555278	.	+	.	Parent=Os01t0110600-00
Chr01	irgsp1_rep	five_prime_UTR	555364	555437	.	+	.	Parent=Os01t0110600-00
Chr01	irgsp1_rep	five_prime_UTR	555518	555594	.	+	.	Parent=Os01t0110600-00
Chr01	irgsp1_rep	five_prime_UTR	555675	555759	.	+	.	Parent=Os01t0110600-00
Chr01	irgsp1_rep	five_prime_UTR	555841	556221	.	+	.	Parent=Os01t0110600-00
Chr01	irgsp1_rep	five_prime_UTR	556466	556484	.	+	.	Parent=Os01t0110600-00
Chr01	irgsp1_rep	CDS	556485	557257	.	+	0	Parent=Os01t0110600-00
Chr01	irgsp1_rep	mRNA	562088	572092	.	-	.	ID=Os01t0110700-01;Name=Os01t0110700-01;Locus_id=Os01g0110700;Oryzabase Gene Symbol Synonym(s)=Osppc-b%2C OsSTA1%2C ppc-b%2C STA1%2C BTPC%2C OsBTPC;Oryzabase Gene Name Synonym(s)=phosphoenolpyruvate carboxylase b%2C PEPCase b%2C bacterial-type PEPC%2C bacterial-type Phosphoenolpyruvate carboxylase;Note=Similar to Phosphoenolpyruvate carboxylase (EC 4.1.1.31).;Transcript_evidence=AK100688 (DDBJ%2C Best hit);ORF_evidence=A6YM33 (UniProt);GO=Biological Process: tricarboxylic acid cycle (GO:0006099),Biological Process: carbon fixation (GO:0015977),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphoenolpyruvate carboxylase activity (GO:0008964);InterPro=Pyruvate/Phosphoenolpyruvate kinase (IPR015813),Phosphoenolpyruvate carboxylase%2C active site (IPR018129),Phosphoenolpyruvate carboxylase (IPR021135);NIAS_FLcDNA=J023114C19;Oryzabase=18346;Expression=AK100688;TENOR=Os01t0110700-01;KEGG=Os01t0110700-01 (EC:4.1.1.31)
Chr01	irgsp1_rep	five_prime_UTR	572003	572092	.	-	.	Parent=Os01t0110700-01
Chr01	irgsp1_rep	CDS	571847	572002	.	-	0	Parent=Os01t0110700-01
Chr01	irgsp1_rep	CDS	571614	571777	.	-	0	Parent=Os01t0110700-01
Chr01	irgsp1_rep	CDS	570589	570703	.	-	1	Parent=Os01t0110700-01
Chr01	irgsp1_rep	CDS	570380	570457	.	-	0	Parent=Os01t0110700-01
Chr01	irgsp1_rep	CDS	570229	570297	.	-	0	Parent=Os01t0110700-01
Chr01	irgsp1_rep	CDS	570070	570148	.	-	0	Parent=Os01t0110700-01
Chr01	irgsp1_rep	CDS	569924	570000	.	-	2	Parent=Os01t0110700-01
Chr01	irgsp1_rep	CDS	569735	569830	.	-	0	Parent=Os01t0110700-01
Chr01	irgsp1_rep	CDS	569426	569567	.	-	0	Parent=Os01t0110700-01
Chr01	irgsp1_rep	CDS	568618	568746	.	-	2	Parent=Os01t0110700-01
Chr01	irgsp1_rep	CDS	567249	567310	.	-	2	Parent=Os01t0110700-01
Chr01	irgsp1_rep	CDS	566713	566928	.	-	0	Parent=Os01t0110700-01
Chr01	irgsp1_rep	CDS	566156	566281	.	-	0	Parent=Os01t0110700-01
Chr01	irgsp1_rep	CDS	565750	565851	.	-	0	Parent=Os01t0110700-01
Chr01	irgsp1_rep	CDS	565476	565622	.	-	0	Parent=Os01t0110700-01
Chr01	irgsp1_rep	CDS	564310	564408	.	-	0	Parent=Os01t0110700-01
Chr01	irgsp1_rep	CDS	563996	564084	.	-	0	Parent=Os01t0110700-01
Chr01	irgsp1_rep	CDS	563517	563643	.	-	1	Parent=Os01t0110700-01
Chr01	irgsp1_rep	CDS	563219	563425	.	-	0	Parent=Os01t0110700-01
Chr01	irgsp1_rep	CDS	562304	563131	.	-	0	Parent=Os01t0110700-01
Chr01	irgsp1_rep	three_prime_UTR	562088	562303	.	-	.	Parent=Os01t0110700-01
Chr01	irgsp1_rep	mRNA	562138	569556	.	-	.	ID=Os01t0110700-02;Name=Os01t0110700-02;Locus_id=Os01g0110700;Oryzabase Gene Symbol Synonym(s)=Osppc-b%2C OsSTA1%2C ppc-b%2C STA1%2C BTPC%2C OsBTPC;Oryzabase Gene Name Synonym(s)=phosphoenolpyruvate carboxylase b%2C PEPCase b%2C bacterial-type PEPC%2C bacterial-type Phosphoenolpyruvate carboxylase;Note=Similar to Phosphoenolpyruvate carboxylase.;Transcript_evidence=AK119573 (DDBJ%2C Best hit);ORF_evidence=A6YM33 (UniProt);GO=Biological Process: tricarboxylic acid cycle (GO:0006099),Biological Process: carbon fixation (GO:0015977),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphoenolpyruvate carboxylase activity (GO:0008964);InterPro=Pyruvate/Phosphoenolpyruvate kinase (IPR015813),Phosphoenolpyruvate carboxylase%2C active site (IPR018129),Phosphoenolpyruvate carboxylase (IPR021135);NIAS_FLcDNA=002-117-B02;Oryzabase=18346;Expression=AK119573;TENOR=Os01t0110700-02;KEGG=Os01t0110700-02 (EC:4.1.1.31)
Chr01	irgsp1_rep	five_prime_UTR	569556	569556	.	-	.	Parent=Os01t0110700-02
Chr01	irgsp1_rep	CDS	569426	569555	.	-	0	Parent=Os01t0110700-02
Chr01	irgsp1_rep	CDS	568618	568746	.	-	2	Parent=Os01t0110700-02
Chr01	irgsp1_rep	CDS	567249	567310	.	-	2	Parent=Os01t0110700-02
Chr01	irgsp1_rep	CDS	566713	566928	.	-	0	Parent=Os01t0110700-02
Chr01	irgsp1_rep	CDS	566156	566281	.	-	0	Parent=Os01t0110700-02
Chr01	irgsp1_rep	CDS	565750	565851	.	-	0	Parent=Os01t0110700-02
Chr01	irgsp1_rep	CDS	565476	565622	.	-	0	Parent=Os01t0110700-02
Chr01	irgsp1_rep	CDS	564310	564408	.	-	0	Parent=Os01t0110700-02
Chr01	irgsp1_rep	CDS	563996	564084	.	-	0	Parent=Os01t0110700-02
Chr01	irgsp1_rep	CDS	563517	563643	.	-	1	Parent=Os01t0110700-02
Chr01	irgsp1_rep	CDS	563219	563425	.	-	0	Parent=Os01t0110700-02
Chr01	irgsp1_rep	CDS	562304	563131	.	-	0	Parent=Os01t0110700-02
Chr01	irgsp1_rep	three_prime_UTR	562138	562303	.	-	.	Parent=Os01t0110700-02
Chr01	irgsp1_rep	mRNA	576495	579569	.	-	.	ID=Os01t0110800-01;Name=Os01t0110800-01;Locus_id=Os01g0110800;Note=Leucine-rich repeat%2C plant specific containing protein.;Transcript_evidence=AK065190 (DDBJ%2C Best hit);ORF_evidence=B8ACV6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=J013002E08;Expression=AK065190;TENOR=Os01t0110800-01;KEGG=Os01t0110800-01
Chr01	irgsp1_rep	five_prime_UTR	579279	579569	.	-	.	Parent=Os01t0110800-01
Chr01	irgsp1_rep	CDS	579024	579278	.	-	0	Parent=Os01t0110800-01
Chr01	irgsp1_rep	CDS	577564	577984	.	-	0	Parent=Os01t0110800-01
Chr01	irgsp1_rep	CDS	576806	577482	.	-	2	Parent=Os01t0110800-01
Chr01	irgsp1_rep	three_prime_UTR	576495	576805	.	-	.	Parent=Os01t0110800-01
Chr01	irgsp1_rep	mRNA	585876	586445	.	+	.	ID=Os01t0111000-00;Name=Os01t0111000-00;Locus_id=Os01g0111000;CGSNL Gene Symbol=PMEI1;CGSNL Gene Name=PECTIN METHYLESTERASE INHIBITOR 1;Oryzabase Gene Symbol Synonym(s)=PMEI-1;Oryzabase Gene Name Synonym(s)=PME inhibitor 1%2C pectin methylesterase inhibitor 1;Note=Pectinesterase inhibitor domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q657T2 (UniProt);GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);Oryzabase=22008;TENOR=Os01t0111000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	585876	586015	.	+	0	Parent=Os01t0111000-00
Chr01	irgsp1_rep	CDS	586142	586445	.	+	1	Parent=Os01t0111000-00
Chr01	irgsp1_rep	mRNA	586445	587696	.	-	.	ID=Os01t0111100-01;Name=Os01t0111100-01;Locus_id=Os01g0111100;CGSNL Gene Symbol=CYP26-2;CGSNL Gene Name=CYCLOPHILIN 26-2;Oryzabase Gene Symbol Synonym(s)=OsCYP26-2%2C OsCYP-1%2C OsCYP26-1;Oryzabase Gene Name Synonym(s)=cyclophilin 26-2%2C cyclophilin 1;Note=Cyclophilin-like domain containing protein.;Transcript_evidence=AK065672 (DDBJ%2C Best hit);ORF_evidence=NP_565079.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);InterPro=Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type (IPR002130),Cyclophilin-like (IPR015891);NIAS_FLcDNA=J013039E22;Oryzabase=10066;Expression=AK065672;TENOR=Os01t0111100-01;KEGG=Os01t0111100-01 (EC:5.2.1.8)
Chr01	irgsp1_rep	five_prime_UTR	587688	587696	.	-	.	Parent=Os01t0111100-01
Chr01	irgsp1_rep	CDS	586921	587687	.	-	0	Parent=Os01t0111100-01
Chr01	irgsp1_rep	CDS	586670	586787	.	-	1	Parent=Os01t0111100-01
Chr01	irgsp1_rep	three_prime_UTR	586445	586669	.	-	.	Parent=Os01t0111100-01
Chr01	irgsp1_rep	mRNA	588917	593714	.	+	.	ID=Os01t0111200-01;Name=Os01t0111200-01;Locus_id=Os01g0111200;Oryzabase Gene Name Synonym(s)=Sm gene%2C Sm family protein;Note=Like-Sm ribonucleoprotein (LSM)-related domain domain containing protein.;Transcript_evidence=AK102802 (DDBJ%2C Best hit);ORF_evidence=B8ACV9 (UniProt);InterPro=Like-Sm ribonucleoprotein (LSM)-related domain (IPR010920),DFDF motif (IPR019050),FFD/TFG box motif (IPR019053);NIAS_FLcDNA=J033108G08;Oryzabase=15634;Expression=AK102802;TENOR=Os01t0111200-01;KEGG=Os01t0111200-01
Chr01	irgsp1_rep	five_prime_UTR	588917	588974	.	+	.	Parent=Os01t0111200-01
Chr01	irgsp1_rep	CDS	588975	589179	.	+	0	Parent=Os01t0111200-01
Chr01	irgsp1_rep	CDS	589506	589606	.	+	2	Parent=Os01t0111200-01
Chr01	irgsp1_rep	CDS	590087	590167	.	+	0	Parent=Os01t0111200-01
Chr01	irgsp1_rep	CDS	590240	591178	.	+	0	Parent=Os01t0111200-01
Chr01	irgsp1_rep	CDS	591837	591902	.	+	0	Parent=Os01t0111200-01
Chr01	irgsp1_rep	CDS	592659	592853	.	+	0	Parent=Os01t0111200-01
Chr01	irgsp1_rep	CDS	592939	593049	.	+	0	Parent=Os01t0111200-01
Chr01	irgsp1_rep	CDS	593116	593280	.	+	0	Parent=Os01t0111200-01
Chr01	irgsp1_rep	three_prime_UTR	593281	593714	.	+	.	Parent=Os01t0111200-01
Chr01	irgsp1_rep	mRNA	597009	597804	.	+	.	ID=Os01t0111300-01;Name=Os01t0111300-01;Locus_id=Os01g0111300;Note=Conserved hypothetical protein.;Transcript_evidence=AK105004 (DDBJ%2C Best hit);ORF_evidence=Q6L578 (UniProt);NIAS_FLcDNA=001-006-B03;TENOR=Os01t0111300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	597009	597345	.	+	.	Parent=Os01t0111300-01
Chr01	irgsp1_rep	CDS	597346	597507	.	+	0	Parent=Os01t0111300-01
Chr01	irgsp1_rep	three_prime_UTR	597508	597804	.	+	.	Parent=Os01t0111300-01
Chr01	irgsp1_rep	mRNA	598290	601457	.	+	.	ID=Os01t0111400-01;Name=Os01t0111400-01;Locus_id=Os01g0111400;Note=Zinc finger%2C BED-type predicted domain containing protein.;Transcript_evidence=AK066455 (DDBJ%2C Best hit);ORF_evidence=NP_001147568.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Zinc finger%2C BED-type predicted (IPR003656),HAT dimerisation (IPR008906),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J013063C15;Expression=AK066455;TENOR=Os01t0111400-01;KEGG=Os01t0111400-01
Chr01	irgsp1_rep	five_prime_UTR	598290	598479	.	+	.	Parent=Os01t0111400-01
Chr01	irgsp1_rep	five_prime_UTR	598707	598717	.	+	.	Parent=Os01t0111400-01
Chr01	irgsp1_rep	CDS	598718	598940	.	+	0	Parent=Os01t0111400-01
Chr01	irgsp1_rep	CDS	599229	600211	.	+	2	Parent=Os01t0111400-01
Chr01	irgsp1_rep	CDS	600306	601205	.	+	0	Parent=Os01t0111400-01
Chr01	irgsp1_rep	three_prime_UTR	601206	601457	.	+	.	Parent=Os01t0111400-01
Chr01	irgsp1_rep	mRNA	598300	601467	.	+	.	ID=Os01t0111400-02;Name=Os01t0111400-02;Locus_id=Os01g0111400;Note=Similar to transposon protein.;Transcript_evidence=AK067704 (DDBJ%2C Best hit);ORF_evidence=NP_001147568.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677);InterPro=Zinc finger%2C BED-type predicted (IPR003656),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J013116N12;Expression=AK067704;TENOR=Os01t0111400-02;KEGG=Os01t0111400-02
Chr01	irgsp1_rep	five_prime_UTR	598300	598301	.	+	.	Parent=Os01t0111400-02
Chr01	irgsp1_rep	CDS	598302	598479	.	+	0	Parent=Os01t0111400-02
Chr01	irgsp1_rep	CDS	598764	598940	.	+	2	Parent=Os01t0111400-02
Chr01	irgsp1_rep	CDS	599229	600238	.	+	2	Parent=Os01t0111400-02
Chr01	irgsp1_rep	three_prime_UTR	600239	601467	.	+	.	Parent=Os01t0111400-02
Chr01	irgsp1_rep	mRNA	603643	605643	.	-	.	ID=Os01t0111500-01;Name=Os01t0111500-01;Locus_id=Os01g0111500;RAP-DB Gene Symbol Synonym(s)=OsbHLH125%2C OsRSL1;RAP-DB Gene Name Synonym(s)=basic helix-loop-helix protein 125;Oryzabase Gene Symbol Synonym(s)=OsbHLH125%2C bHLH125%2C OsRSL1%2C RSL1;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 125%2C ROOT HAIR DEFECTIVE-SIX LIKE 1;Note=ROOT HAIR DEFECTIVE-SIX LIKE (RSL) class I basic helix-loop-helix protein%2C bHLH transcription factor%2C Regulation of root hair development;Transcript_evidence=AK108587;ORF_evidence=Q0JRA9;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);NIAS_FLcDNA=002-146-B03;Manual Curation=October 4%2C 2016;Literature_PMID=27494519,27716929;Oryzabase=15403;Expression=AK108587;TENOR=Os01t0111500-01;KEGG=Os01t0111500-01
Chr01	irgsp1_rep	five_prime_UTR	605433	605643	.	-	.	Parent=Os01t0111500-01
Chr01	irgsp1_rep	CDS	604932	605432	.	-	0	Parent=Os01t0111500-01
Chr01	irgsp1_rep	CDS	604681	604824	.	-	0	Parent=Os01t0111500-01
Chr01	irgsp1_rep	CDS	604489	604554	.	-	0	Parent=Os01t0111500-01
Chr01	irgsp1_rep	CDS	604302	604367	.	-	0	Parent=Os01t0111500-01
Chr01	irgsp1_rep	CDS	604019	604129	.	-	0	Parent=Os01t0111500-01
Chr01	irgsp1_rep	three_prime_UTR	603643	604018	.	-	.	Parent=Os01t0111500-01
Chr01	irgsp1_rep	mRNA	612564	615631	.	+	.	ID=Os01t0111600-01;Name=Os01t0111600-01;Locus_id=Os01g0111600;RAP-DB Gene Symbol Synonym(s)=OsMFT2;RAP-DB Gene Name Synonym(s)=MOTHER OF FT AND TFL 2;Oryzabase Gene Symbol Synonym(s)=OsMFT2%2C MFT2%2C OsMFT;Oryzabase Gene Name Synonym(s)=MFT-like gene 2%2C MOTHER OF FT AND TFL 2;Note=PEBP (phosphatidylethanolamine-binding protein) family protein%2C Regulation of ABA signaling-mediated seed germination;Transcript_evidence=AK110620;ORF_evidence=Q9ASJ1;InterPro=PEBP-like superfamily (IPR036610),Phosphatidylethanolamine-binding protein (IPR008914),Phosphatidylethanolamine-binding protein%2C eukaryotic (IPR035810),Phosphatidylethanolamine-binding%2C conserved site (IPR001858);NIAS_FLcDNA=002-169-A04;Manual Curation=March 16%2C 2020;Literature_PMID=32170894;Oryzabase=11878;Expression=AK110620;TENOR=Os01t0111600-01;KEGG=Os01t0111600-01;Subcellular location=nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	612564	612716	.	+	.	Parent=Os01t0111600-01
Chr01	irgsp1_rep	CDS	612717	612911	.	+	0	Parent=Os01t0111600-01
Chr01	irgsp1_rep	CDS	613017	613078	.	+	0	Parent=Os01t0111600-01
Chr01	irgsp1_rep	CDS	613423	613463	.	+	1	Parent=Os01t0111600-01
Chr01	irgsp1_rep	CDS	615047	615273	.	+	2	Parent=Os01t0111600-01
Chr01	irgsp1_rep	three_prime_UTR	615274	615631	.	+	.	Parent=Os01t0111600-01
Chr01	irgsp1_rep	mRNA	620572	621516	.	-	.	ID=Os01t0111700-01;Name=Os01t0111700-01;Locus_id=Os01g0111700;Note=Conserved hypothetical protein.;Transcript_evidence=AK108920 (DDBJ%2C Best hit);ORF_evidence=A2WJV3 (UniProt);NIAS_FLcDNA=002-152-H07;Expression=AK108920;TENOR=Os01t0111700-01;KEGG=Os01t0111700-01
Chr01	irgsp1_rep	five_prime_UTR	621463	621516	.	-	.	Parent=Os01t0111700-01
Chr01	irgsp1_rep	CDS	620935	621462	.	-	0	Parent=Os01t0111700-01
Chr01	irgsp1_rep	three_prime_UTR	620572	620934	.	-	.	Parent=Os01t0111700-01
Chr01	irgsp1_rep	mRNA	624087	624613	.	+	.	ID=Os01t0111800-01;Name=Os01t0111800-01;Locus_id=Os01g0111800;Note=Conserved hypothetical protein.;Transcript_evidence=AK059312 (DDBJ%2C Best hit);ORF_evidence=B8ACW1 (UniProt);NIAS_FLcDNA=001-025-G10;Expression=AK059312;TENOR=Os01t0111800-01;KEGG=Os01t0111800-01
Chr01	irgsp1_rep	five_prime_UTR	624087	624134	.	+	.	Parent=Os01t0111800-01
Chr01	irgsp1_rep	CDS	624135	624470	.	+	0	Parent=Os01t0111800-01
Chr01	irgsp1_rep	three_prime_UTR	624471	624613	.	+	.	Parent=Os01t0111800-01
Chr01	irgsp1_rep	mRNA	624123	624759	.	+	.	ID=Os01t0111800-02;Name=Os01t0111800-02;Locus_id=Os01g0111800;Note=Conserved hypothetical protein.;Transcript_evidence=AK071433 (DDBJ%2C Best hit);ORF_evidence=B8ACW1 (UniProt);NIAS_FLcDNA=J023093B16;Expression=AK071433;TENOR=Os01t0111800-02;KEGG=Os01t0111800-02
Chr01	irgsp1_rep	five_prime_UTR	624123	624134	.	+	.	Parent=Os01t0111800-02
Chr01	irgsp1_rep	CDS	624135	624470	.	+	0	Parent=Os01t0111800-02
Chr01	irgsp1_rep	three_prime_UTR	624471	624759	.	+	.	Parent=Os01t0111800-02
Chr01	irgsp1_rep	mRNA	625986	627009	.	+	.	ID=Os01t0111900-01;Name=Os01t0111900-01;Locus_id=Os01g0111900;Oryzabase Gene Symbol Synonym(s)=SIP34;Oryzabase Gene Name Synonym(s)=SKIP interacting protein 34%2C SKIPa-interacting protein 34%2C SKIPa-interacting protein 34;Note=Glutelin family protein.;Transcript_evidence=AK103326 (DDBJ%2C Best hit);ORF_evidence=NP_001149355.1 (RefSeq);NIAS_FLcDNA=J033125L13;Oryzabase=9966;Expression=AK103326;TENOR=Os01t0111900-01;KEGG=Os01t0111900-01
Chr01	irgsp1_rep	five_prime_UTR	625986	626197	.	+	.	Parent=Os01t0111900-01
Chr01	irgsp1_rep	CDS	626198	626719	.	+	0	Parent=Os01t0111900-01
Chr01	irgsp1_rep	three_prime_UTR	626720	627009	.	+	.	Parent=Os01t0111900-01
Chr01	irgsp1_rep	mRNA	632139	632790	.	+	.	ID=Os01t0112000-01;Name=Os01t0112000-01;Locus_id=Os01g0112000;Note=Conserved hypothetical protein.;Transcript_evidence=AK103623 (DDBJ%2C Best hit);ORF_evidence=A2ZNG6 (UniProt);NIAS_FLcDNA=J033133N12;Expression=AK103623;TENOR=Os01t0112000-01;KEGG=Os01t0112000-01
Chr01	irgsp1_rep	five_prime_UTR	632139	632195	.	+	.	Parent=Os01t0112000-01
Chr01	irgsp1_rep	CDS	632196	632675	.	+	0	Parent=Os01t0112000-01
Chr01	irgsp1_rep	three_prime_UTR	632676	632790	.	+	.	Parent=Os01t0112000-01
Chr01	irgsp1_rep	mRNA	634040	634757	.	-	.	ID=Os01t0112050-01;Name=Os01t0112050-01;Locus_id=Os01g0112050;Note=Non-protein coding transcript.;Transcript_evidence=AK287520 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J053044N13;TENOR=Os01t0112050-01
Chr01	irgsp1_rep	exon	634040	634757	.	-	.	Parent=Os01t0112050-01
Chr01	irgsp1_rep	mRNA	635325	639015	.	-	.	ID=Os01t0112100-01;Name=Os01t0112100-01;Locus_id=Os01g0112100;Oryzabase Gene Symbol Synonym(s)=UN1;Note=Conserved hypothetical protein.;Transcript_evidence=AK100946 (DDBJ%2C Best hit),AK070580 (DDBJ%2C Best hit);ORF_evidence=A2WJV7 (UniProt);NIAS_FLcDNA=J023138H16,J023061N16;Oryzabase=23403;Expression=AK100946;TENOR=Os01t0112100-01;KEGG=Os01t0112100-01
Chr01	irgsp1_rep	five_prime_UTR	638966	639015	.	-	.	Parent=Os01t0112100-01
Chr01	irgsp1_rep	CDS	637835	638965	.	-	0	Parent=Os01t0112100-01
Chr01	irgsp1_rep	three_prime_UTR	635325	637834	.	-	.	Parent=Os01t0112100-01
Chr01	irgsp1_rep	mRNA	637962	639060	.	+	.	ID=Os01t0112201-01;Name=Os01t0112201-01;Locus_id=Os01g0112201;Note=Hypothetical protein.;Transcript_evidence=AK240920 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065038E03;TENOR=Os01t0112201-01;KEGG=Os01t0112201-01
Chr01	irgsp1_rep	five_prime_UTR	637962	638645	.	+	.	Parent=Os01t0112201-01
Chr01	irgsp1_rep	CDS	638646	639017	.	+	0	Parent=Os01t0112201-01
Chr01	irgsp1_rep	three_prime_UTR	639018	639060	.	+	.	Parent=Os01t0112201-01
Chr01	irgsp1_rep	mRNA	640698	644217	.	-	.	ID=Os01t0112300-01;Name=Os01t0112300-01;Locus_id=Os01g0112300;Note=Hypothetical conserved gene.;Transcript_evidence=AK242069 (DDBJ%2C Best hit);ORF_evidence=B9EYV6 (UniProt);NIAS_FLcDNA=J075132O17;TENOR=Os01t0112300-01;KEGG=Os01t0112300-01
Chr01	irgsp1_rep	five_prime_UTR	644114	644217	.	-	.	Parent=Os01t0112300-01
Chr01	irgsp1_rep	CDS	644077	644113	.	-	0	Parent=Os01t0112300-01
Chr01	irgsp1_rep	CDS	643497	643573	.	-	2	Parent=Os01t0112300-01
Chr01	irgsp1_rep	CDS	643109	643396	.	-	0	Parent=Os01t0112300-01
Chr01	irgsp1_rep	three_prime_UTR	642643	643108	.	-	.	Parent=Os01t0112300-01
Chr01	irgsp1_rep	three_prime_UTR	642343	642444	.	-	.	Parent=Os01t0112300-01
Chr01	irgsp1_rep	three_prime_UTR	642141	642230	.	-	.	Parent=Os01t0112300-01
Chr01	irgsp1_rep	three_prime_UTR	641972	642046	.	-	.	Parent=Os01t0112300-01
Chr01	irgsp1_rep	three_prime_UTR	641826	641858	.	-	.	Parent=Os01t0112300-01
Chr01	irgsp1_rep	three_prime_UTR	641655	641718	.	-	.	Parent=Os01t0112300-01
Chr01	irgsp1_rep	three_prime_UTR	641465	641520	.	-	.	Parent=Os01t0112300-01
Chr01	irgsp1_rep	three_prime_UTR	641290	641379	.	-	.	Parent=Os01t0112300-01
Chr01	irgsp1_rep	three_prime_UTR	640698	641192	.	-	.	Parent=Os01t0112300-01
Chr01	irgsp1_rep	mRNA	645598	646722	.	-	.	ID=Os01t0112400-01;Name=Os01t0112400-01;Locus_id=Os01g0112400;CGSNL Gene Symbol=NIP4%3B1;CGSNL Gene Name=NOD26 LIKE INTRINSIC PROTEIN 4%3B1;Oryzabase Gene Symbol Synonym(s)=OsNIP4%3B1%2C NIP4-1%2C OsNIP4.1%2C NIP4.1;Oryzabase Gene Name Synonym(s)=Aquaporin NIP4-1%2C NOD26-like intrinsic protein 4-1;Note=Major intrinsic protein family protein.;Transcript_evidence=AK106825 (DDBJ%2C Best hit);ORF_evidence=Q9ASI1 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Major intrinsic protein%2C conserved site (IPR022357),Aquaporin-like (IPR023271);NIAS_FLcDNA=002-116-E11;Oryzabase=8526;Expression=AK106825;TENOR=Os01t0112400-01;KEGG=Os01t0112400-01
Chr01	irgsp1_rep	five_prime_UTR	646698	646722	.	-	.	Parent=Os01t0112400-01
Chr01	irgsp1_rep	CDS	646524	646697	.	-	0	Parent=Os01t0112400-01
Chr01	irgsp1_rep	CDS	645732	646418	.	-	0	Parent=Os01t0112400-01
Chr01	irgsp1_rep	three_prime_UTR	645598	645731	.	-	.	Parent=Os01t0112400-01
Chr01	irgsp1_rep	mRNA	648288	651869	.	-	.	ID=Os01t0112500-01;Name=Os01t0112500-01;Locus_id=Os01g0112500;Note=Similar to Plakoglobin/armadillo/beta-catenin-like protein (Fragment).;Transcript_evidence=AK120201 (DDBJ%2C Best hit);ORF_evidence=Q71VM2 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013037I12;TENOR=Os01t0112500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	651746	651869	.	-	.	Parent=Os01t0112500-01
Chr01	irgsp1_rep	CDS	651477	651745	.	-	0	Parent=Os01t0112500-01
Chr01	irgsp1_rep	CDS	648528	649329	.	-	1	Parent=Os01t0112500-01
Chr01	irgsp1_rep	three_prime_UTR	648288	648527	.	-	.	Parent=Os01t0112500-01
Chr01	irgsp1_rep	mRNA	648288	649131	.	-	.	ID=Os01t0112500-02;Name=Os01t0112500-02;Locus_id=Os01g0112500;Note=Similar to Plakoglobin/armadillo/beta-catenin-like protein (Fragment).;Transcript_evidence=AK058409 (DDBJ%2C Best hit);ORF_evidence=Q71VM2 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=001-015-C05;TENOR=Os01t0112500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	649131	649131	.	-	.	Parent=Os01t0112500-02
Chr01	irgsp1_rep	CDS	648528	649130	.	-	0	Parent=Os01t0112500-02
Chr01	irgsp1_rep	three_prime_UTR	648288	648527	.	-	.	Parent=Os01t0112500-02
Chr01	irgsp1_rep	mRNA	677029	677602	.	+	.	ID=Os01t0112600-01;Name=Os01t0112600-01;Locus_id=Os01g0112600;Note=Conserved hypothetical protein.;Transcript_evidence=AK241069 (DDBJ%2C Best hit);ORF_evidence=NP_001172135.1 (RefSeq);NIAS_FLcDNA=J065066I06;TENOR=Os01t0112600-01;KEGG=Os01t0112600-01
Chr01	irgsp1_rep	five_prime_UTR	677029	677079	.	+	.	Parent=Os01t0112600-01
Chr01	irgsp1_rep	CDS	677080	677337	.	+	0	Parent=Os01t0112600-01
Chr01	irgsp1_rep	three_prime_UTR	677338	677602	.	+	.	Parent=Os01t0112600-01
Chr01	irgsp1_rep	mRNA	689788	693923	.	+	.	ID=Os01t0112800-00;Name=Os01t0112800-00;Locus_id=Os01g0112800;Note=Disease resistance protein domain containing protein.;Transcript_evidence=AK367884 (DDBJ);ORF_evidence=NP_001172136.1 (RefSeq);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os01t0112800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	689788	689791	.	+	.	Parent=Os01t0112800-00
Chr01	irgsp1_rep	CDS	689792	692536	.	+	0	Parent=Os01t0112800-00
Chr01	irgsp1_rep	three_prime_UTR	692537	692816	.	+	.	Parent=Os01t0112800-00
Chr01	irgsp1_rep	three_prime_UTR	693222	693923	.	+	.	Parent=Os01t0112800-00
Chr01	irgsp1_rep	mRNA	700533	706399	.	-	.	ID=Os01t0113000-00;Name=Os01t0113000-00;Locus_id=Os01g0113000;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001041816.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase C48%2C SUMO/Sentrin/Ubl1 (IPR003653);TENOR=Os01t0113000-00;KEGG=Os01t0113000-00
Chr01	irgsp1_rep	CDS	706361	706399	.	-	0	Parent=Os01t0113000-00
Chr01	irgsp1_rep	CDS	706104	706302	.	-	0	Parent=Os01t0113000-00
Chr01	irgsp1_rep	CDS	705796	705841	.	-	2	Parent=Os01t0113000-00
Chr01	irgsp1_rep	CDS	704714	705677	.	-	1	Parent=Os01t0113000-00
Chr01	irgsp1_rep	CDS	704497	704640	.	-	0	Parent=Os01t0113000-00
Chr01	irgsp1_rep	CDS	704328	704414	.	-	0	Parent=Os01t0113000-00
Chr01	irgsp1_rep	CDS	703905	704239	.	-	0	Parent=Os01t0113000-00
Chr01	irgsp1_rep	CDS	703308	703548	.	-	1	Parent=Os01t0113000-00
Chr01	irgsp1_rep	CDS	703153	703227	.	-	0	Parent=Os01t0113000-00
Chr01	irgsp1_rep	CDS	702938	703078	.	-	0	Parent=Os01t0113000-00
Chr01	irgsp1_rep	CDS	702759	702853	.	-	0	Parent=Os01t0113000-00
Chr01	irgsp1_rep	CDS	702487	702559	.	-	1	Parent=Os01t0113000-00
Chr01	irgsp1_rep	CDS	701547	702373	.	-	0	Parent=Os01t0113000-00
Chr01	irgsp1_rep	CDS	701298	701469	.	-	1	Parent=Os01t0113000-00
Chr01	irgsp1_rep	CDS	701134	701220	.	-	0	Parent=Os01t0113000-00
Chr01	irgsp1_rep	CDS	700738	700827	.	-	0	Parent=Os01t0113000-00
Chr01	irgsp1_rep	CDS	700533	700643	.	-	0	Parent=Os01t0113000-00
Chr01	irgsp1_rep	mRNA	710956	714232	.	+	.	ID=Os01t0113150-00;Name=Os01t0113150-00;Locus_id=Os01g0113150;Note=Disease resistance protein domain containing protein.;Transcript_evidence=AK367884 (DDBJ);ORF_evidence=A2ZNH1 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os01t0113150-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	710956	712845	.	+	0	Parent=Os01t0113150-00
Chr01	irgsp1_rep	three_prime_UTR	712846	713125	.	+	.	Parent=Os01t0113150-00
Chr01	irgsp1_rep	three_prime_UTR	713531	714232	.	+	.	Parent=Os01t0113150-00
Chr01	irgsp1_rep	mRNA	720673	723317	.	-	.	ID=Os01t0113200-01;Name=Os01t0113200-01;Locus_id=Os01g0113200;CGSNL Gene Symbol=RLCK2;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 2;Oryzabase Gene Symbol Synonym(s)=OsRLCK2%2C rrsRLK;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 2%2C required for ROS-scavenging receptor-like kinase;Note=Similar to Receptor serine/threonine kinase.;Transcript_evidence=AK241355 (DDBJ%2C Best hit);ORF_evidence=O49202 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J065150L24;Oryzabase=18723;TENOR=Os01t0113200-01;KEGG=Os01t0113200-01
Chr01	irgsp1_rep	five_prime_UTR	723284	723317	.	-	.	Parent=Os01t0113200-01
Chr01	irgsp1_rep	CDS	722521	723283	.	-	0	Parent=Os01t0113200-01
Chr01	irgsp1_rep	CDS	722042	722071	.	-	2	Parent=Os01t0113200-01
Chr01	irgsp1_rep	CDS	721524	721902	.	-	2	Parent=Os01t0113200-01
Chr01	irgsp1_rep	CDS	721386	721410	.	-	1	Parent=Os01t0113200-01
Chr01	irgsp1_rep	three_prime_UTR	720673	721385	.	-	.	Parent=Os01t0113200-01
Chr01	irgsp1_rep	mRNA	723693	726099	.	+	.	ID=Os01t0113300-01;Name=Os01t0113300-01;Locus_id=Os01g0113300;CGSNL Gene Symbol=RLCK3;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 3;Oryzabase Gene Symbol Synonym(s)=OsRLCK3;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 3;Note=Similar to ARK protein (Fragment).;Transcript_evidence=AK111565 (DDBJ%2C Best hit);ORF_evidence=Q9XGE8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013071F06;Oryzabase=18724;Expression=AK111565;TENOR=Os01t0113300-01;KEGG=Os01t0113300-01
Chr01	irgsp1_rep	five_prime_UTR	723693	723743	.	+	.	Parent=Os01t0113300-01
Chr01	irgsp1_rep	CDS	723744	724459	.	+	0	Parent=Os01t0113300-01
Chr01	irgsp1_rep	CDS	724542	724711	.	+	1	Parent=Os01t0113300-01
Chr01	irgsp1_rep	CDS	724792	725885	.	+	2	Parent=Os01t0113300-01
Chr01	irgsp1_rep	three_prime_UTR	725886	726099	.	+	.	Parent=Os01t0113300-01
Chr01	irgsp1_rep	mRNA	723736	725885	.	-	.	ID=Os01t0113325-00;Name=Os01t0113325-00;Locus_id=Os01g0113325;Note=Hypothetical protein.;Transcript_evidence=tplb0030a05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0113325-00
Chr01	irgsp1_rep	five_prime_UTR	725854	725885	.	-	.	Parent=Os01t0113325-00
Chr01	irgsp1_rep	CDS	725356	725853	.	-	0	Parent=Os01t0113325-00
Chr01	irgsp1_rep	three_prime_UTR	724739	725355	.	-	.	Parent=Os01t0113325-00
Chr01	irgsp1_rep	three_prime_UTR	723736	724674	.	-	.	Parent=Os01t0113325-00
Chr01	irgsp1_rep	mRNA	728968	731172	.	+	.	ID=Os01t0113350-00;Name=Os01t0113350-00;Locus_id=Os01g0113350;Note=Hypothetical conserved gene.;Transcript_evidence=AK362159 (DDBJ);ORF_evidence=NP_001147808.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Thaumatin%2C pathogenesis-related (IPR001938),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os01t0113350-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	728968	730926	.	+	0	Parent=Os01t0113350-00
Chr01	irgsp1_rep	three_prime_UTR	730927	731172	.	+	.	Parent=Os01t0113350-00
Chr01	irgsp1_rep	mRNA	731303	738020	.	-	.	ID=Os01t0113400-01;Name=Os01t0113400-01;Locus_id=Os01g0113400;CGSNL Gene Symbol=RLCK4;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 4;Oryzabase Gene Symbol Synonym(s)=OsRLCK4;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 4;Note=Similar to Receptor-like kinase.;Transcript_evidence=AK073168 (DDBJ%2C Best hit);ORF_evidence=Q9LL53 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033023H13;Oryzabase=18725;TENOR=Os01t0113400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	737730	738020	.	-	.	Parent=Os01t0113400-01
Chr01	irgsp1_rep	five_prime_UTR	737550	737639	.	-	.	Parent=Os01t0113400-01
Chr01	irgsp1_rep	five_prime_UTR	737375	737440	.	-	.	Parent=Os01t0113400-01
Chr01	irgsp1_rep	CDS	737317	737374	.	-	0	Parent=Os01t0113400-01
Chr01	irgsp1_rep	CDS	733030	733681	.	-	2	Parent=Os01t0113400-01
Chr01	irgsp1_rep	CDS	732695	732921	.	-	1	Parent=Os01t0113400-01
Chr01	irgsp1_rep	CDS	731484	732580	.	-	2	Parent=Os01t0113400-01
Chr01	irgsp1_rep	three_prime_UTR	731303	731483	.	-	.	Parent=Os01t0113400-01
Chr01	irgsp1_rep	mRNA	731150	732538	.	-	.	ID=Os01t0113400-02;Name=Os01t0113400-02;Locus_id=Os01g0113400;CGSNL Gene Symbol=RLCK4;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 4;Oryzabase Gene Symbol Synonym(s)=OsRLCK4;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 4;Note=Similar to Receptor-like kinase.;Transcript_evidence=AK059374 (DDBJ%2C Best hit);ORF_evidence=Q9LL53 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-026-F05;Oryzabase=18725;Expression=AK059374;TENOR=Os01t0113400-02;KEGG=Os01t0113400-02
Chr01	irgsp1_rep	five_prime_UTR	732537	732538	.	-	.	Parent=Os01t0113400-02
Chr01	irgsp1_rep	CDS	731484	732536	.	-	0	Parent=Os01t0113400-02
Chr01	irgsp1_rep	three_prime_UTR	731150	731483	.	-	.	Parent=Os01t0113400-02
Chr01	irgsp1_rep	mRNA	731489	733719	.	+	.	ID=Os01t0113450-00;Name=Os01t0113450-00;Locus_id=Os01g0113450;Note=Hypothetical protein.;Transcript_evidence=tplb0030a05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0113450-00
Chr01	irgsp1_rep	five_prime_UTR	731489	732663	.	+	.	Parent=Os01t0113450-00
Chr01	irgsp1_rep	five_prime_UTR	732844	733283	.	+	.	Parent=Os01t0113450-00
Chr01	irgsp1_rep	CDS	733284	733556	.	+	0	Parent=Os01t0113450-00
Chr01	irgsp1_rep	three_prime_UTR	733557	733719	.	+	.	Parent=Os01t0113450-00
Chr01	irgsp1_rep	mRNA	734071	737556	.	+	.	ID=Os01t0113500-01;Name=Os01t0113500-01;Locus_id=Os01g0113500;Note=Similar to Receptor-like kinase.;Transcript_evidence=AK243318 (DDBJ%2C Best hit);ORF_evidence=Q9LL57 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J100056K06;TENOR=Os01t0113500-01;KEGG=Os01t0113500-01
Chr01	irgsp1_rep	five_prime_UTR	734071	734243	.	+	.	Parent=Os01t0113500-01
Chr01	irgsp1_rep	CDS	734244	735060	.	+	0	Parent=Os01t0113500-01
Chr01	irgsp1_rep	CDS	735779	735802	.	+	2	Parent=Os01t0113500-01
Chr01	irgsp1_rep	CDS	736029	737098	.	+	2	Parent=Os01t0113500-01
Chr01	irgsp1_rep	three_prime_UTR	737099	737556	.	+	.	Parent=Os01t0113500-01
Chr01	irgsp1_rep	mRNA	738283	741797	.	-	.	ID=Os01t0113600-01;Name=Os01t0113600-01;Locus_id=Os01g0113600;Note=Hypothetical protein.;Transcript_evidence=AK110685 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-169-H09;Expression=AK110685;TENOR=Os01t0113600-01;KEGG=Os01t0113600-01
Chr01	irgsp1_rep	five_prime_UTR	741653	741797	.	-	.	Parent=Os01t0113600-01
Chr01	irgsp1_rep	CDS	741507	741652	.	-	0	Parent=Os01t0113600-01
Chr01	irgsp1_rep	CDS	740508	740601	.	-	1	Parent=Os01t0113600-01
Chr01	irgsp1_rep	three_prime_UTR	740436	740507	.	-	.	Parent=Os01t0113600-01
Chr01	irgsp1_rep	three_prime_UTR	738283	738481	.	-	.	Parent=Os01t0113600-01
Chr01	irgsp1_rep	mRNA	738749	741763	.	-	.	ID=Os01t0113600-02;Name=Os01t0113600-02;Locus_id=Os01g0113600;Note=Hypothetical protein.;Transcript_evidence=AK106707 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-114-E12;Expression=AK106707;TENOR=Os01t0113600-02;KEGG=Os01t0113600-02
Chr01	irgsp1_rep	five_prime_UTR	741653	741763	.	-	.	Parent=Os01t0113600-02
Chr01	irgsp1_rep	CDS	741507	741652	.	-	0	Parent=Os01t0113600-02
Chr01	irgsp1_rep	CDS	740508	740601	.	-	1	Parent=Os01t0113600-02
Chr01	irgsp1_rep	three_prime_UTR	738749	740507	.	-	.	Parent=Os01t0113600-02
Chr01	irgsp1_rep	mRNA	738908	740898	.	+	.	ID=Os01t0113650-00;Name=Os01t0113650-00;Locus_id=Os01g0113650;Note=Hypothetical conserved gene.;Transcript_evidence=FP098335 (DDBJ);ORF_evidence=NP_001147808.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Thaumatin%2C pathogenesis-related (IPR001938),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Thaumatin%2C conserved site (IPR017949);TENOR=Os01t0113650-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	738908	738927	.	+	.	Parent=Os01t0113650-00
Chr01	irgsp1_rep	CDS	738928	740898	.	+	0	Parent=Os01t0113650-00
Chr01	irgsp1_rep	mRNA	742860	745177	.	-	.	ID=Os01t0113700-00;Name=Os01t0113700-00;Locus_id=Os01g0113700;Note=Similar to Receptor-like kinase.;Transcript_evidence=AK376475 (DDBJ);ORF_evidence=Q9LL53 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os01t0113700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	744438	745177	.	-	0	Parent=Os01t0113700-00
Chr01	irgsp1_rep	CDS	744100	744320	.	-	1	Parent=Os01t0113700-00
Chr01	irgsp1_rep	CDS	742881	743977	.	-	2	Parent=Os01t0113700-00
Chr01	irgsp1_rep	three_prime_UTR	742860	742880	.	-	.	Parent=Os01t0113700-00
Chr01	irgsp1_rep	mRNA	742883	745165	.	+	.	ID=Os01t0113750-00;Name=Os01t0113750-00;Locus_id=Os01g0113750;Note=Non-protein coding transcript.;Transcript_evidence=tplb0030a05 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os01t0113750-00
Chr01	irgsp1_rep	exon	742883	744189	.	+	.	Parent=Os01t0113750-00
Chr01	irgsp1_rep	exon	744382	745165	.	+	.	Parent=Os01t0113750-00
Chr01	irgsp1_rep	mRNA	745452	748945	.	+	.	ID=Os01t0113800-01;Name=Os01t0113800-01;Locus_id=Os01g0113800;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK111700 (DDBJ%2C Best hit);ORF_evidence=Q9LL57 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023005G06;Expression=AK111700;TENOR=Os01t0113800-01;KEGG=Os01t0113800-01
Chr01	irgsp1_rep	five_prime_UTR	745452	745581	.	+	.	Parent=Os01t0113800-01
Chr01	irgsp1_rep	CDS	745582	746380	.	+	0	Parent=Os01t0113800-01
Chr01	irgsp1_rep	CDS	747107	747130	.	+	2	Parent=Os01t0113800-01
Chr01	irgsp1_rep	CDS	747500	748569	.	+	2	Parent=Os01t0113800-01
Chr01	irgsp1_rep	three_prime_UTR	748570	748945	.	+	.	Parent=Os01t0113800-01
Chr01	irgsp1_rep	mRNA	752080	754992	.	-	.	ID=Os01t0113900-01;Name=Os01t0113900-01;Locus_id=Os01g0113900;Note=Similar to Receptor-like protein kinase.;Transcript_evidence=AK068796 (DDBJ%2C Best hit);ORF_evidence=Q9M574 (UniProt);NIAS_FLcDNA=J013166D14;TENOR=Os01t0113900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	754946	754992	.	-	.	Parent=Os01t0113900-01
Chr01	irgsp1_rep	CDS	754188	754945	.	-	0	Parent=Os01t0113900-01
Chr01	irgsp1_rep	CDS	753866	754056	.	-	1	Parent=Os01t0113900-01
Chr01	irgsp1_rep	CDS	752947	753275	.	-	2	Parent=Os01t0113900-01
Chr01	irgsp1_rep	three_prime_UTR	752080	752946	.	-	.	Parent=Os01t0113900-01
Chr01	irgsp1_rep	mRNA	752189	754829	.	+	.	ID=Os01t0113950-00;Name=Os01t0113950-00;Locus_id=Os01g0113950;Note=Hypothetical protein.;Transcript_evidence=tplb0030a05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0113950-00
Chr01	irgsp1_rep	five_prime_UTR	752189	753421	.	+	.	Parent=Os01t0113950-00
Chr01	irgsp1_rep	five_prime_UTR	753869	754033	.	+	.	Parent=Os01t0113950-00
Chr01	irgsp1_rep	five_prime_UTR	754229	754404	.	+	.	Parent=Os01t0113950-00
Chr01	irgsp1_rep	CDS	754405	754635	.	+	0	Parent=Os01t0113950-00
Chr01	irgsp1_rep	three_prime_UTR	754636	754829	.	+	.	Parent=Os01t0113950-00
Chr01	irgsp1_rep	mRNA	756221	756901	.	-	.	ID=Os01t0114000-00;Name=Os01t0114000-00;Locus_id=Os01g0114000;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);InterPro=Ribonuclease H1%2C N-terminal (IPR011320);TENOR=Os01t0114000-00
Chr01	irgsp1_rep	five_prime_UTR	756710	756901	.	-	.	Parent=Os01t0114000-00
Chr01	irgsp1_rep	CDS	756221	756709	.	-	0	Parent=Os01t0114000-00
Chr01	irgsp1_rep	mRNA	760695	760756	.	+	.	ID=Os01t0114050-00;Name=Os01t0114050-00;Locus_id=Os01g0114050;Note=Non-protein coding transcript.;Transcript_evidence=EU941912 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0114050-00
Chr01	irgsp1_rep	exon	760695	760756	.	+	.	Parent=Os01t0114050-00
Chr01	irgsp1_rep	mRNA	767181	769673	.	-	.	ID=Os01t0114100-01;Name=Os01t0114100-01;Locus_id=Os01g0114100;CGSNL Gene Symbol=RLCK5;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 5;Oryzabase Gene Symbol Synonym(s)=OsRLCK5;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 5;Note=Similar to Protein kinase RLK17.;Transcript_evidence=AK068451 (DDBJ%2C Best hit);ORF_evidence=Q9LL54 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013152M16;Oryzabase=18726;Expression=AK068451;TENOR=Os01t0114100-01;KEGG=Os01t0114100-01
Chr01	irgsp1_rep	five_prime_UTR	769616	769673	.	-	.	Parent=Os01t0114100-01
Chr01	irgsp1_rep	CDS	768900	769615	.	-	0	Parent=Os01t0114100-01
Chr01	irgsp1_rep	CDS	768599	768756	.	-	1	Parent=Os01t0114100-01
Chr01	irgsp1_rep	CDS	767382	768487	.	-	2	Parent=Os01t0114100-01
Chr01	irgsp1_rep	three_prime_UTR	767181	767381	.	-	.	Parent=Os01t0114100-01
Chr01	irgsp1_rep	mRNA	767384	769651	.	+	.	ID=Os01t0114150-00;Name=Os01t0114150-00;Locus_id=Os01g0114150;Note=Non-protein coding transcript.;Transcript_evidence=tplb0030a05 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os01t0114150-00
Chr01	irgsp1_rep	exon	767384	768561	.	+	.	Parent=Os01t0114150-00
Chr01	irgsp1_rep	exon	768681	769651	.	+	.	Parent=Os01t0114150-00
Chr01	irgsp1_rep	mRNA	770284	774374	.	-	.	ID=Os01t0114200-01;Name=Os01t0114200-01;Locus_id=Os01g0114200;Note=Conserved hypothetical protein.;Transcript_evidence=AK099453 (DDBJ%2C Best hit);ORF_evidence=NP_001172142.1 (RefSeq);NIAS_FLcDNA=J013022K11;Expression=AK099453;TENOR=Os01t0114200-01;KEGG=Os01t0114200-01
Chr01	irgsp1_rep	five_prime_UTR	774076	774374	.	-	.	Parent=Os01t0114200-01
Chr01	irgsp1_rep	five_prime_UTR	773843	773980	.	-	.	Parent=Os01t0114200-01
Chr01	irgsp1_rep	five_prime_UTR	770669	770692	.	-	.	Parent=Os01t0114200-01
Chr01	irgsp1_rep	CDS	770390	770668	.	-	0	Parent=Os01t0114200-01
Chr01	irgsp1_rep	three_prime_UTR	770284	770389	.	-	.	Parent=Os01t0114200-01
Chr01	irgsp1_rep	mRNA	770332	773829	.	+	.	ID=Os01t0114300-01;Name=Os01t0114300-01;Locus_id=Os01g0114300;CGSNL Gene Symbol=RLCK6;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 6;Oryzabase Gene Symbol Synonym(s)=OsRLCK6;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 6;Note=Similar to Receptor-like protein kinase (Fragment).;Transcript_evidence=AK120121 (DDBJ%2C Best hit);ORF_evidence=O49206 (UniProt);NIAS_FLcDNA=J013025P07;Oryzabase=18727;TENOR=Os01t0114300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	770332	771993	.	+	.	Parent=Os01t0114300-01
Chr01	irgsp1_rep	CDS	771994	772236	.	+	0	Parent=Os01t0114300-01
Chr01	irgsp1_rep	three_prime_UTR	772237	772363	.	+	.	Parent=Os01t0114300-01
Chr01	irgsp1_rep	three_prime_UTR	772470	773829	.	+	.	Parent=Os01t0114300-01
Chr01	irgsp1_rep	mRNA	774727	775743	.	-	.	ID=Os01t0114400-00;Name=Os01t0114400-00;Locus_id=Os01g0114400;CGSNL Gene Symbol=RLCK7;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 7;Oryzabase Gene Symbol Synonym(s)=OsRLCK7;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 7;Note=Similar to Receptor-like kinase.;Transcript_evidence=AK376323 (DDBJ);ORF_evidence=Q9LL56 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18728;TENOR=Os01t0114400-00;KEGG=Os01t0114400-00
Chr01	irgsp1_rep	CDS	774727	775743	.	-	0	Parent=Os01t0114400-00
Chr01	irgsp1_rep	mRNA	774848	779158	.	+	.	ID=Os01t0114402-00;Name=Os01t0114402-00;Locus_id=Os01g0114402;Note=Hypothetical protein.;Transcript_evidence=tplb0030a05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0114402-00
Chr01	irgsp1_rep	five_prime_UTR	774848	774857	.	+	.	Parent=Os01t0114402-00
Chr01	irgsp1_rep	CDS	774858	775175	.	+	0	Parent=Os01t0114402-00
Chr01	irgsp1_rep	three_prime_UTR	775176	776169	.	+	.	Parent=Os01t0114402-00
Chr01	irgsp1_rep	three_prime_UTR	778457	779158	.	+	.	Parent=Os01t0114402-00
Chr01	irgsp1_rep	mRNA	782765	784932	.	-	.	ID=Os01t0114550-01;Name=Os01t0114550-01;Locus_id=Os01g0114550;Note=Non-protein coding transcript.;Transcript_evidence=AK242624 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090020C13;TENOR=Os01t0114550-01
Chr01	irgsp1_rep	exon	782765	784932	.	-	.	Parent=Os01t0114550-01
Chr01	irgsp1_rep	mRNA	786373	788619	.	-	.	ID=Os01t0114600-00;Name=Os01t0114600-00;Locus_id=Os01g0114600;CGSNL Gene Symbol=RLCK8;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 8;Oryzabase Gene Symbol Synonym(s)=OsRLCK8;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 8;Note=Similar to Receptor-like protein kinase.;Transcript_evidence=ab initio prediction;ORF_evidence=Q9M575 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18729;TENOR=Os01t0114600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	787844	788619	.	-	0	Parent=Os01t0114600-00
Chr01	irgsp1_rep	CDS	787572	787756	.	-	1	Parent=Os01t0114600-00
Chr01	irgsp1_rep	CDS	786373	787499	.	-	2	Parent=Os01t0114600-00
Chr01	irgsp1_rep	mRNA	786401	788484	.	+	.	ID=Os01t0114650-00;Name=Os01t0114650-00;Locus_id=Os01g0114650;Note=Non-protein coding transcript.;Transcript_evidence=tplb0030a05 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os01t0114650-00
Chr01	irgsp1_rep	exon	786401	787797	.	+	.	Parent=Os01t0114650-00
Chr01	irgsp1_rep	exon	787899	788484	.	+	.	Parent=Os01t0114650-00
Chr01	irgsp1_rep	mRNA	789714	792435	.	+	.	ID=Os01t0114700-00;Name=Os01t0114700-00;Locus_id=Os01g0114700;Note=Similar to Receptor-like kinase.;Transcript_evidence=BT067108 (DDBJ);ORF_evidence=Q9LKY7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os01t0114700-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	789714	789768	.	+	.	Parent=Os01t0114700-00
Chr01	irgsp1_rep	CDS	789769	790555	.	+	0	Parent=Os01t0114700-00
Chr01	irgsp1_rep	CDS	791139	791162	.	+	2	Parent=Os01t0114700-00
Chr01	irgsp1_rep	CDS	791339	792411	.	+	2	Parent=Os01t0114700-00
Chr01	irgsp1_rep	three_prime_UTR	792412	792435	.	+	.	Parent=Os01t0114700-00
Chr01	irgsp1_rep	mRNA	792455	796419	.	-	.	ID=Os01t0114800-01;Name=Os01t0114800-01;Locus_id=Os01g0114800;Note=Similar to H0215A08.3 protein.;Transcript_evidence=AK070789 (DDBJ%2C Best hit);ORF_evidence=Q01N39 (UniProt);NIAS_FLcDNA=J023064F16;TENOR=Os01t0114800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	796137	796419	.	-	.	Parent=Os01t0114800-01
Chr01	irgsp1_rep	five_prime_UTR	795590	795720	.	-	.	Parent=Os01t0114800-01
Chr01	irgsp1_rep	five_prime_UTR	793939	793984	.	-	.	Parent=Os01t0114800-01
Chr01	irgsp1_rep	five_prime_UTR	793625	793750	.	-	.	Parent=Os01t0114800-01
Chr01	irgsp1_rep	CDS	793596	793624	.	-	0	Parent=Os01t0114800-01
Chr01	irgsp1_rep	CDS	793088	793511	.	-	1	Parent=Os01t0114800-01
Chr01	irgsp1_rep	three_prime_UTR	792455	793087	.	-	.	Parent=Os01t0114800-01
Chr01	irgsp1_rep	mRNA	794499	795413	.	+	.	ID=Os01t0114900-00;Name=Os01t0114900-00;Locus_id=Os01g0114900;CGSNL Gene Symbol=RLCK9;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 9;Oryzabase Gene Symbol Synonym(s)=OsRLCK9;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 9;Note=Similar to LRK14.;Transcript_evidence=ab initio prediction;ORF_evidence=Q9LL57 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);Oryzabase=18730;TENOR=Os01t0114900-00;KEGG=Os01t0114900-00
Chr01	irgsp1_rep	CDS	794499	795413	.	+	0	Parent=Os01t0114900-00
Chr01	irgsp1_rep	mRNA	804097	806932	.	-	.	ID=Os01t0115100-01;Name=Os01t0115100-01;Locus_id=Os01g0115100;Note=Hypothetical conserved gene.;Transcript_evidence=AK242515 (DDBJ%2C Best hit);ORF_evidence=B9EYW8 (UniProt);NIAS_FLcDNA=J080312D15;TENOR=Os01t0115100-01;KEGG=Os01t0115100-01
Chr01	irgsp1_rep	five_prime_UTR	806723	806932	.	-	.	Parent=Os01t0115100-01
Chr01	irgsp1_rep	five_prime_UTR	806488	806564	.	-	.	Parent=Os01t0115100-01
Chr01	irgsp1_rep	five_prime_UTR	805938	806412	.	-	.	Parent=Os01t0115100-01
Chr01	irgsp1_rep	CDS	805599	805937	.	-	0	Parent=Os01t0115100-01
Chr01	irgsp1_rep	CDS	804752	804815	.	-	0	Parent=Os01t0115100-01
Chr01	irgsp1_rep	CDS	804299	804333	.	-	2	Parent=Os01t0115100-01
Chr01	irgsp1_rep	three_prime_UTR	804097	804298	.	-	.	Parent=Os01t0115100-01
Chr01	irgsp1_rep	mRNA	808373	808859	.	+	.	ID=Os01t0115200-00;Name=Os01t0115200-00;Locus_id=Os01g0115200;Note=Similar to OSIGBa0140C02.7 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B7ETP8 (UniProt);GO=Molecular Function: carbon-nitrogen ligase activity%2C with glutamine as amido-N-donor (GO:0016884);InterPro=Amidase (IPR000120),Amidase signature domain (IPR023631);TENOR=Os01t0115200-00;KEGG=Os01t0115200-00
Chr01	irgsp1_rep	CDS	808373	808516	.	+	0	Parent=Os01t0115200-00
Chr01	irgsp1_rep	CDS	808533	808859	.	+	0	Parent=Os01t0115200-00
Chr01	irgsp1_rep	mRNA	808174	810139	.	-	.	ID=Os01t0115300-01;Name=Os01t0115300-01;Locus_id=Os01g0115300;Note=Hypothetical gene.;Transcript_evidence=AK107581 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=002-130-E03;Expression=AK107581;TENOR=Os01t0115300-01;KEGG=Os01t0115300-01
Chr01	irgsp1_rep	five_prime_UTR	809301	810139	.	-	.	Parent=Os01t0115300-01
Chr01	irgsp1_rep	CDS	809267	809300	.	-	0	Parent=Os01t0115300-01
Chr01	irgsp1_rep	CDS	808874	809109	.	-	2	Parent=Os01t0115300-01
Chr01	irgsp1_rep	three_prime_UTR	808174	808873	.	-	.	Parent=Os01t0115300-01
Chr01	irgsp1_rep	mRNA	839809	840828	.	-	.	ID=Os01t0115500-00;Name=Os01t0115500-00;Locus_id=Os01g0115500;CGSNL Gene Symbol=RLCK10;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 10;Oryzabase Gene Symbol Synonym(s)=OsRLCK10;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 10;Note=Similar to Receptor-like kinase.;Transcript_evidence=AK369477 (DDBJ);ORF_evidence=Q9LL53 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18731;TENOR=Os01t0115500-00;KEGG=Os01t0115500-00
Chr01	irgsp1_rep	CDS	839809	840828	.	-	0	Parent=Os01t0115500-00
Chr01	irgsp1_rep	mRNA	839879	842743	.	+	.	ID=Os01t0115533-00;Name=Os01t0115533-00;Locus_id=Os01g0115533;Note=Non-protein coding transcript.;Transcript_evidence=tplb0030a05 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os01t0115533-00
Chr01	irgsp1_rep	exon	839879	841146	.	+	.	Parent=Os01t0115533-00
Chr01	irgsp1_rep	exon	841969	842743	.	+	.	Parent=Os01t0115533-00
Chr01	irgsp1_rep	mRNA	842002	842757	.	-	.	ID=Os01t0115566-00;Name=Os01t0115566-00;Locus_id=Os01g0115566;CGSNL Gene Symbol=RLCK10;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 10;Oryzabase Gene Symbol Synonym(s)=OsRLCK10;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 10;Note=Similar to Receptor-like kinase.;Transcript_evidence=ab initio prediction;ORF_evidence=Q9LL54 (UniProt);Oryzabase=18731;TENOR=Os01t0115566-00
Chr01	irgsp1_rep	CDS	842002	842757	.	-	0	Parent=Os01t0115566-00
Chr01	irgsp1_rep	mRNA	843530	847399	.	+	.	ID=Os01t0115600-01;Name=Os01t0115600-01;Locus_id=Os01g0115600;CGSNL Gene Symbol=RLCK11;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 11;Oryzabase Gene Symbol Synonym(s)=OsRLCK11;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 11;Note=Similar to LRK14.;Transcript_evidence=AK121074 (DDBJ%2C Best hit);ORF_evidence=Q9LL55 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J023061O14;Oryzabase=18732;Expression=AK121074;TENOR=Os01t0115600-01;KEGG=Os01t0115600-01
Chr01	irgsp1_rep	five_prime_UTR	843530	843542	.	+	.	Parent=Os01t0115600-01
Chr01	irgsp1_rep	CDS	843543	844311	.	+	0	Parent=Os01t0115600-01
Chr01	irgsp1_rep	CDS	845964	845987	.	+	2	Parent=Os01t0115600-01
Chr01	irgsp1_rep	CDS	846202	847274	.	+	2	Parent=Os01t0115600-01
Chr01	irgsp1_rep	three_prime_UTR	847275	847399	.	+	.	Parent=Os01t0115600-01
Chr01	irgsp1_rep	mRNA	852249	854568	.	-	.	ID=Os01t0115700-00;Name=Os01t0115700-00;Locus_id=Os01g0115700;Note=Similar to Receptor-like kinase.;Transcript_evidence=AK353778 (DDBJ);ORF_evidence=Q9LL52 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os01t0115700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	853922	854568	.	-	0	Parent=Os01t0115700-00
Chr01	irgsp1_rep	CDS	852249	853488	.	-	1	Parent=Os01t0115700-00
Chr01	irgsp1_rep	mRNA	852275	854570	.	+	.	ID=Os01t0115725-00;Name=Os01t0115725-00;Locus_id=Os01g0115725;Note=Hypothetical protein.;Transcript_evidence=tplb0030a05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0115725-00
Chr01	irgsp1_rep	five_prime_UTR	852275	853405	.	+	.	Parent=Os01t0115725-00
Chr01	irgsp1_rep	five_prime_UTR	853580	854223	.	+	.	Parent=Os01t0115725-00
Chr01	irgsp1_rep	CDS	854224	854514	.	+	0	Parent=Os01t0115725-00
Chr01	irgsp1_rep	three_prime_UTR	854515	854570	.	+	.	Parent=Os01t0115725-00
Chr01	irgsp1_rep	mRNA	857897	860583	.	-	.	ID=Os01t0115750-00;Name=Os01t0115750-00;Locus_id=Os01g0115750;Oryzabase Gene Symbol Synonym(s)=Os8Tak2%2C YK21%2C OsRLCK12%2C RLCK12;Oryzabase Gene Name Synonym(s)=Tak Receptor-Like Kinase 2%2C Receptor-like Cytoplasmic Kinase 12;Note=Similar to Receptor-like protein kinase.;Transcript_evidence=AK331027 (DDBJ);ORF_evidence=Q9M574 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=13836;TENOR=Os01t0115750-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	859802	860583	.	-	0	Parent=Os01t0115750-00
Chr01	irgsp1_rep	CDS	857957	859211	.	-	1	Parent=Os01t0115750-00
Chr01	irgsp1_rep	three_prime_UTR	857897	857956	.	-	.	Parent=Os01t0115750-00
Chr01	irgsp1_rep	mRNA	857905	860521	.	+	.	ID=Os01t0115752-00;Name=Os01t0115752-00;Locus_id=Os01g0115752;Note=Non-protein coding transcript.;Transcript_evidence=tplb0030a05 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os01t0115752-00
Chr01	irgsp1_rep	exon	857905	859100	.	+	.	Parent=Os01t0115752-00
Chr01	irgsp1_rep	exon	859587	860521	.	+	.	Parent=Os01t0115752-00
Chr01	irgsp1_rep	mRNA	862579	865249	.	-	.	ID=Os01t0115800-01;Name=Os01t0115800-01;Locus_id=Os01g0115800;Oryzabase Gene Symbol Synonym(s)=Os8Tak1;Oryzabase Gene Name Synonym(s)=Tak Receptor-Like Kinase 1;Note=Similar to Receptor-like kinase.;Transcript_evidence=AK120293 (DDBJ%2C Best hit);ORF_evidence=Q9SWV0 (UniProt);NIAS_FLcDNA=J013050K22;Oryzabase=13835;TENOR=Os01t0115800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	865209	865249	.	-	.	Parent=Os01t0115800-01
Chr01	irgsp1_rep	CDS	864490	865208	.	-	0	Parent=Os01t0115800-01
Chr01	irgsp1_rep	CDS	864217	864386	.	-	1	Parent=Os01t0115800-01
Chr01	irgsp1_rep	CDS	864121	864131	.	-	2	Parent=Os01t0115800-01
Chr01	irgsp1_rep	three_prime_UTR	862579	864120	.	-	.	Parent=Os01t0115800-01
Chr01	irgsp1_rep	mRNA	865938	869298	.	+	.	ID=Os01t0115900-00;Name=Os01t0115900-00;Locus_id=Os01g0115900;Note=Similar to Receptor-like protein kinase.;Transcript_evidence=AK120121 (DDBJ%2C Secondary hit);ORF_evidence=Q9M576 (UniProt);TENOR=Os01t0115900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	865938	865965	.	+	.	Parent=Os01t0115900-00
Chr01	irgsp1_rep	CDS	865966	866763	.	+	0	Parent=Os01t0115900-00
Chr01	irgsp1_rep	three_prime_UTR	866764	867883	.	+	.	Parent=Os01t0115900-00
Chr01	irgsp1_rep	three_prime_UTR	867991	869175	.	+	.	Parent=Os01t0115900-00
Chr01	irgsp1_rep	three_prime_UTR	869182	869298	.	+	.	Parent=Os01t0115900-00
Chr01	irgsp1_rep	mRNA	863115	865183	.	+	.	ID=Os01t0115950-00;Name=Os01t0115950-00;Locus_id=Os01g0115950;Note=Hypothetical protein.;Transcript_evidence=tplb0030a05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0115950-00
Chr01	irgsp1_rep	five_prime_UTR	863115	863815	.	+	.	Parent=Os01t0115950-00
Chr01	irgsp1_rep	CDS	863816	864262	.	+	0	Parent=Os01t0115950-00
Chr01	irgsp1_rep	three_prime_UTR	864263	864362	.	+	.	Parent=Os01t0115950-00
Chr01	irgsp1_rep	three_prime_UTR	864425	865183	.	+	.	Parent=Os01t0115950-00
Chr01	irgsp1_rep	mRNA	872458	874817	.	-	.	ID=Os01t0116000-00;Name=Os01t0116000-00;Locus_id=Os01g0116000;Oryzabase Gene Symbol Synonym(s)=Os8Tak3;Oryzabase Gene Name Synonym(s)=Tak Receptor-Like Kinase 3;Note=Similar to Receptor-like protein kinase.;Transcript_evidence=AK364903 (DDBJ);ORF_evidence=Q9M577 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=13837;TENOR=Os01t0116000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	874051	874817	.	-	0	Parent=Os01t0116000-00
Chr01	irgsp1_rep	CDS	873799	873950	.	-	1	Parent=Os01t0116000-00
Chr01	irgsp1_rep	CDS	872481	873616	.	-	2	Parent=Os01t0116000-00
Chr01	irgsp1_rep	three_prime_UTR	872458	872480	.	-	.	Parent=Os01t0116000-00
Chr01	irgsp1_rep	mRNA	865786	869533	.	-	.	ID=Os01t0116100-01;Name=Os01t0116100-01;Locus_id=Os01g0116100;Note=Conserved hypothetical protein.;Transcript_evidence=AK318568 (DDBJ%2C Best hit);ORF_evidence=NP_001172142.1 (RefSeq);NIAS_FLcDNA=J080093F08;TENOR=Os01t0116100-01;KEGG=Os01t0116100-01
Chr01	irgsp1_rep	five_prime_UTR	869364	869533	.	-	.	Parent=Os01t0116100-01
Chr01	irgsp1_rep	five_prime_UTR	866193	866216	.	-	.	Parent=Os01t0116100-01
Chr01	irgsp1_rep	CDS	865917	866192	.	-	0	Parent=Os01t0116100-01
Chr01	irgsp1_rep	three_prime_UTR	865786	865916	.	-	.	Parent=Os01t0116100-01
Chr01	irgsp1_rep	mRNA	872509	874697	.	+	.	ID=Os01t0116101-00;Name=Os01t0116101-00;Locus_id=Os01g0116101;Note=Hypothetical protein.;Transcript_evidence=tplb0030a05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0116101-00
Chr01	irgsp1_rep	five_prime_UTR	872509	873290	.	+	.	Parent=Os01t0116101-00
Chr01	irgsp1_rep	CDS	873291	873671	.	+	0	Parent=Os01t0116101-00
Chr01	irgsp1_rep	three_prime_UTR	873672	873762	.	+	.	Parent=Os01t0116101-00
Chr01	irgsp1_rep	three_prime_UTR	873877	874697	.	+	.	Parent=Os01t0116101-00
Chr01	irgsp1_rep	mRNA	911735	914246	.	-	.	ID=Os01t0116200-01;Name=Os01t0116200-01;Locus_id=Os01g0116200;CGSNL Gene Symbol=RLCK13;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 13;Oryzabase Gene Symbol Synonym(s)=OsRLCK13;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 13;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK074011 (DDBJ%2C Best hit);ORF_evidence=Q9SWV0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033074L11;Oryzabase=18733;Expression=AK074011;TENOR=Os01t0116200-01;KEGG=Os01t0116200-01
Chr01	irgsp1_rep	five_prime_UTR	914220	914246	.	-	.	Parent=Os01t0116200-01
Chr01	irgsp1_rep	CDS	913462	914219	.	-	0	Parent=Os01t0116200-01
Chr01	irgsp1_rep	CDS	913112	913338	.	-	1	Parent=Os01t0116200-01
Chr01	irgsp1_rep	CDS	911857	913004	.	-	2	Parent=Os01t0116200-01
Chr01	irgsp1_rep	three_prime_UTR	911735	911856	.	-	.	Parent=Os01t0116200-01
Chr01	irgsp1_rep	mRNA	911978	914143	.	+	.	ID=Os01t0116250-00;Name=Os01t0116250-00;Locus_id=Os01g0116250;Note=Hypothetical protein.;Transcript_evidence=tplb0030a05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0116250-00
Chr01	irgsp1_rep	five_prime_UTR	911978	911987	.	+	.	Parent=Os01t0116250-00
Chr01	irgsp1_rep	CDS	911988	912305	.	+	0	Parent=Os01t0116250-00
Chr01	irgsp1_rep	three_prime_UTR	912306	913225	.	+	.	Parent=Os01t0116250-00
Chr01	irgsp1_rep	three_prime_UTR	913416	914143	.	+	.	Parent=Os01t0116250-00
Chr01	irgsp1_rep	mRNA	915605	917636	.	+	.	ID=Os01t0116300-01;Name=Os01t0116300-01;Locus_id=Os01g0116300;CGSNL Gene Symbol=RLCK14;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 14;Oryzabase Gene Symbol Synonym(s)=OsRLCK14;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 14;Note=Similar to Receptor-like kinase.;Transcript_evidence=AK241651 (DDBJ%2C Best hit);ORF_evidence=Q9LL57 (UniProt);NIAS_FLcDNA=J065191A02;Oryzabase=18734;TENOR=Os01t0116300-01;KEGG=Os01t0116300-01
Chr01	irgsp1_rep	five_prime_UTR	915605	915638	.	+	.	Parent=Os01t0116300-01
Chr01	irgsp1_rep	CDS	915639	916571	.	+	0	Parent=Os01t0116300-01
Chr01	irgsp1_rep	three_prime_UTR	916572	917636	.	+	.	Parent=Os01t0116300-01
Chr01	irgsp1_rep	mRNA	921078	923630	.	-	.	ID=Os01t0116400-01;Name=Os01t0116400-01;Locus_id=Os01g0116400;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK066041 (DDBJ%2C Best hit);ORF_evidence=B8ACX8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013046E24;Expression=AK066041;TENOR=Os01t0116400-01;KEGG=Os01t0116400-01
Chr01	irgsp1_rep	five_prime_UTR	923583	923630	.	-	.	Parent=Os01t0116400-01
Chr01	irgsp1_rep	CDS	922834	923582	.	-	0	Parent=Os01t0116400-01
Chr01	irgsp1_rep	CDS	922519	922682	.	-	1	Parent=Os01t0116400-01
Chr01	irgsp1_rep	CDS	921271	922391	.	-	2	Parent=Os01t0116400-01
Chr01	irgsp1_rep	three_prime_UTR	921078	921270	.	-	.	Parent=Os01t0116400-01
Chr01	irgsp1_rep	mRNA	929884	934458	.	-	.	ID=Os01t0116600-01;Name=Os01t0116600-01;Locus_id=Os01g0116600;RAP-DB Gene Symbol Synonym(s)=SPL33;RAP-DB Gene Name Synonym(s)=SPOTTED LEAF 33%2C spotted leaf 33;CGSNL Gene Symbol=SPL33;CGSNL Gene Name=SPOTTED LEAF 33;Oryzabase Gene Symbol Synonym(s)=LMM5.1%2C SPL33/LMM5.1;Oryzabase Gene Name Synonym(s)=spotted leaf 33%2C Lesion mimic mutant 5.1;Note=Eukaryotic translation elongation factor 1 alpha (eEF1A)-like protein%2C Negative regulation of cell death%2C Defense response;Transcript_evidence=AK073254;ORF_evidence=Q5ZE81;GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Zinc finger%2C RanBP2-type (IPR001876),P-loop containing nucleoside triphosphate hydrolase (IPR027417),Transcription factor%2C GTP-binding domain (IPR000795),Translation protein%2C beta-barrel domain (IPR009000),Translation elongation factor EF1A/initiation factor IF2gamma%2C C-terminal (IPR009001),Translation elongation factor EFTu/EF1A%2C C-terminal (IPR004160);NIAS_FLcDNA=J033022J22;Manual Curation=April 24%2C 2017;Literature_PMID=28199670;Oryzabase=21681;TENOR=Os01t0116600-01;Subcellular location=endoplasmic reticulum (GO:0005783)
Chr01	irgsp1_rep	five_prime_UTR	934405	934458	.	-	.	Parent=Os01t0116600-01
Chr01	irgsp1_rep	CDS	934269	934404	.	-	0	Parent=Os01t0116600-01
Chr01	irgsp1_rep	CDS	933304	933453	.	-	2	Parent=Os01t0116600-01
Chr01	irgsp1_rep	CDS	933069	933203	.	-	2	Parent=Os01t0116600-01
Chr01	irgsp1_rep	CDS	932547	932599	.	-	2	Parent=Os01t0116600-01
Chr01	irgsp1_rep	CDS	932268	932474	.	-	0	Parent=Os01t0116600-01
Chr01	irgsp1_rep	CDS	932047	932157	.	-	0	Parent=Os01t0116600-01
Chr01	irgsp1_rep	CDS	931461	931960	.	-	0	Parent=Os01t0116600-01
Chr01	irgsp1_rep	CDS	931038	931206	.	-	1	Parent=Os01t0116600-01
Chr01	irgsp1_rep	CDS	930534	930773	.	-	0	Parent=Os01t0116600-01
Chr01	irgsp1_rep	CDS	930328	930459	.	-	0	Parent=Os01t0116600-01
Chr01	irgsp1_rep	CDS	930107	930241	.	-	0	Parent=Os01t0116600-01
Chr01	irgsp1_rep	three_prime_UTR	929884	930106	.	-	.	Parent=Os01t0116600-01
Chr01	irgsp1_rep	mRNA	929884	932368	.	-	.	ID=Os01t0116600-02;Name=Os01t0116600-02;Locus_id=Os01g0116600;CGSNL Gene Symbol=SPL33;CGSNL Gene Name=SPOTTED LEAF 33;Oryzabase Gene Symbol Synonym(s)=LMM5.1%2C SPL33/LMM5.1;Oryzabase Gene Name Synonym(s)=spotted leaf 33%2C Lesion mimic mutant 5.1;Note=Similar to predicted protein.;Transcript_evidence=AK121811 (DDBJ%2C Best hit);ORF_evidence=Q259E7 (UniProt);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Protein synthesis factor%2C GTP-binding (IPR000795),Translation elongation factor EFTu/EF1A%2C C-terminal (IPR004160),Translation elongation factor EFTu/EF1A%2C domain 2 (IPR004161),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Translation elongation factor EF1A/initiation factor IF2gamma%2C C-terminal (IPR009001);NIAS_FLcDNA=J033098B11;Oryzabase=21681;Expression=AK121811;TENOR=Os01t0116600-02;KEGG=Os01t0116600-02
Chr01	irgsp1_rep	five_prime_UTR	932367	932368	.	-	.	Parent=Os01t0116600-02
Chr01	irgsp1_rep	CDS	932268	932366	.	-	0	Parent=Os01t0116600-02
Chr01	irgsp1_rep	CDS	932047	932157	.	-	0	Parent=Os01t0116600-02
Chr01	irgsp1_rep	CDS	931461	931960	.	-	0	Parent=Os01t0116600-02
Chr01	irgsp1_rep	CDS	931038	931206	.	-	1	Parent=Os01t0116600-02
Chr01	irgsp1_rep	CDS	930534	930773	.	-	0	Parent=Os01t0116600-02
Chr01	irgsp1_rep	CDS	930328	930459	.	-	0	Parent=Os01t0116600-02
Chr01	irgsp1_rep	CDS	930107	930241	.	-	0	Parent=Os01t0116600-02
Chr01	irgsp1_rep	three_prime_UTR	929884	930106	.	-	.	Parent=Os01t0116600-02
Chr01	irgsp1_rep	mRNA	921296	923591	.	+	.	ID=Os01t0116650-00;Name=Os01t0116650-00;Locus_id=Os01g0116650;Note=Hypothetical protein.;Transcript_evidence=tplb0030a05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0116650-00
Chr01	irgsp1_rep	five_prime_UTR	921296	921581	.	+	.	Parent=Os01t0116650-00
Chr01	irgsp1_rep	CDS	921582	921857	.	+	0	Parent=Os01t0116650-00
Chr01	irgsp1_rep	three_prime_UTR	921858	922742	.	+	.	Parent=Os01t0116650-00
Chr01	irgsp1_rep	three_prime_UTR	922880	923591	.	+	.	Parent=Os01t0116650-00
Chr01	irgsp1_rep	mRNA	935574	936704	.	-	.	ID=Os01t0116800-00;Name=Os01t0116800-00;Locus_id=Os01g0116800;Note=Similar to Receptor-like kinase.;Transcript_evidence=ab initio prediction;ORF_evidence=Q9LL58 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os01t0116800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	935574	936704	.	-	0	Parent=Os01t0116800-00
Chr01	irgsp1_rep	mRNA	924451	956639	.	+	.	ID=Os01t0116900-00;Name=Os01t0116900-00;Locus_id=Os01g0116900;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK356501 (DDBJ);ORF_evidence=NP_001041839.2 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os01t0116900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	924451	924840	.	+	0	Parent=Os01t0116900-00
Chr01	irgsp1_rep	CDS	939350	939434	.	+	0	Parent=Os01t0116900-00
Chr01	irgsp1_rep	CDS	955567	956639	.	+	2	Parent=Os01t0116900-00
Chr01	irgsp1_rep	mRNA	935618	938250	.	+	.	ID=Os01t0116901-00;Name=Os01t0116901-00;Locus_id=Os01g0116901;Note=Hypothetical protein.;Transcript_evidence=tplb0030a05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0116901-00
Chr01	irgsp1_rep	five_prime_UTR	935618	935656	.	+	.	Parent=Os01t0116901-00
Chr01	irgsp1_rep	CDS	935657	936181	.	+	0	Parent=Os01t0116901-00
Chr01	irgsp1_rep	three_prime_UTR	936182	936985	.	+	.	Parent=Os01t0116901-00
Chr01	irgsp1_rep	three_prime_UTR	937593	938250	.	+	.	Parent=Os01t0116901-00
Chr01	irgsp1_rep	mRNA	957907	960626	.	-	.	ID=Os01t0117000-00;Name=Os01t0117000-00;Locus_id=Os01g0117000;CGSNL Gene Symbol=RLCK15;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 15;Oryzabase Gene Symbol Synonym(s)=OsRLCK15;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 15;Note=Similar to Receptor-like kinase ARK1AS.;Transcript_evidence=ab initio prediction;ORF_evidence=Q9XGE8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18735;TENOR=Os01t0117000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	959875	960626	.	-	0	Parent=Os01t0117000-00
Chr01	irgsp1_rep	CDS	959587	959756	.	-	1	Parent=Os01t0117000-00
Chr01	irgsp1_rep	CDS	958768	959486	.	-	2	Parent=Os01t0117000-00
Chr01	irgsp1_rep	CDS	958408	958676	.	-	0	Parent=Os01t0117000-00
Chr01	irgsp1_rep	CDS	957907	958219	.	-	1	Parent=Os01t0117000-00
Chr01	irgsp1_rep	mRNA	957952	960545	.	+	.	ID=Os01t0117025-00;Name=Os01t0117025-00;Locus_id=Os01g0117025;Note=Hypothetical protein.;Transcript_evidence=tplb0030a05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0117025-00
Chr01	irgsp1_rep	five_prime_UTR	957952	957983	.	+	.	Parent=Os01t0117025-00
Chr01	irgsp1_rep	CDS	957984	958210	.	+	0	Parent=Os01t0117025-00
Chr01	irgsp1_rep	CDS	958650	958680	.	+	1	Parent=Os01t0117025-00
Chr01	irgsp1_rep	three_prime_UTR	958681	959571	.	+	.	Parent=Os01t0117025-00
Chr01	irgsp1_rep	three_prime_UTR	959700	960545	.	+	.	Parent=Os01t0117025-00
Chr01	irgsp1_rep	mRNA	961335	961973	.	-	.	ID=Os01t0117050-01;Name=Os01t0117050-01;Locus_id=Os01g0117050;Note=Non-protein coding transcript.;Transcript_evidence=AK242962 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090090J23;TENOR=Os01t0117050-01
Chr01	irgsp1_rep	exon	961335	961973	.	-	.	Parent=Os01t0117050-01
Chr01	irgsp1_rep	mRNA	961799	965151	.	+	.	ID=Os01t0117100-00;Name=Os01t0117100-00;Locus_id=Os01g0117100;Note=Similar to Receptor kinase LRK10.;Transcript_evidence=AK356501 (DDBJ);ORF_evidence=Q84K89 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os01t0117100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	961799	962086	.	+	.	Parent=Os01t0117100-00
Chr01	irgsp1_rep	five_prime_UTR	962505	962569	.	+	.	Parent=Os01t0117100-00
Chr01	irgsp1_rep	five_prime_UTR	964038	964056	.	+	.	Parent=Os01t0117100-00
Chr01	irgsp1_rep	CDS	964057	965151	.	+	0	Parent=Os01t0117100-00
Chr01	irgsp1_rep	mRNA	969340	973327	.	-	.	ID=Os01t0117200-01;Name=Os01t0117200-01;Locus_id=Os01g0117200;CGSNL Gene Symbol=RLCK16;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 16;Oryzabase Gene Symbol Synonym(s)=OsRLCK16;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 16;Note=Similar to ARK protein (Fragment).;Transcript_evidence=AK120089 (DDBJ%2C Best hit);ORF_evidence=Q9ATQ4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013020P18;Oryzabase=18736;Expression=AK120089;TENOR=Os01t0117200-01;KEGG=Os01t0117200-01
Chr01	irgsp1_rep	five_prime_UTR	973306	973327	.	-	.	Parent=Os01t0117200-01
Chr01	irgsp1_rep	CDS	972485	973305	.	-	0	Parent=Os01t0117200-01
Chr01	irgsp1_rep	CDS	972191	972363	.	-	1	Parent=Os01t0117200-01
Chr01	irgsp1_rep	CDS	969487	970664	.	-	2	Parent=Os01t0117200-01
Chr01	irgsp1_rep	three_prime_UTR	969340	969486	.	-	.	Parent=Os01t0117200-01
Chr01	irgsp1_rep	mRNA	969539	970666	.	+	.	ID=Os01t0117233-00;Name=Os01t0117233-00;Locus_id=Os01g0117233;Note=Non-protein coding transcript.;Transcript_evidence=tplb0030a05 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os01t0117233-00
Chr01	irgsp1_rep	exon	969539	970666	.	+	.	Parent=Os01t0117233-00
Chr01	irgsp1_rep	mRNA	976766	977218	.	+	.	ID=Os01t0117266-00;Name=Os01t0117266-00;Locus_id=Os01g0117266;CGSNL Gene Symbol=RLCK17;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 17;Oryzabase Gene Symbol Synonym(s)=OsRLCK17;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 17;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001041850.1 (RefSeq);Oryzabase=18737;TENOR=Os01t0117266-00
Chr01	irgsp1_rep	CDS	976766	977218	.	+	0	Parent=Os01t0117266-00
Chr01	irgsp1_rep	mRNA	979238	980546	.	+	.	ID=Os01t0117300-00;Name=Os01t0117300-00;Locus_id=Os01g0117300;CGSNL Gene Symbol=RLCK17;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 17;Oryzabase Gene Symbol Synonym(s)=OsRLCK17;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 17;Note=Similar to Receptor kinase LRK10.;Transcript_evidence=AK356501 (DDBJ);ORF_evidence=Q84K89 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18737;TENOR=Os01t0117300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	979238	980431	.	+	0	Parent=Os01t0117300-00
Chr01	irgsp1_rep	three_prime_UTR	980432	980546	.	+	.	Parent=Os01t0117300-00
Chr01	irgsp1_rep	mRNA	984510	985133	.	-	.	ID=Os01t0117400-00;Name=Os01t0117400-00;Locus_id=Os01g0117400;CGSNL Gene Symbol=RLCK18;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 18;Oryzabase Gene Symbol Synonym(s)=OsRLCK18;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 18;Note=Similar to Receptor-like kinase.;Transcript_evidence=ab initio prediction;ORF_evidence=Q9LL58 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);Oryzabase=18738;TENOR=Os01t0117400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	984510	985133	.	-	0	Parent=Os01t0117400-00
Chr01	irgsp1_rep	mRNA	984536	986741	.	+	.	ID=Os01t0117450-00;Name=Os01t0117450-00;Locus_id=Os01g0117450;Note=Hypothetical protein.;Transcript_evidence=tplb0030a05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0117450-00
Chr01	irgsp1_rep	five_prime_UTR	984536	984586	.	+	.	Parent=Os01t0117450-00
Chr01	irgsp1_rep	CDS	984587	984949	.	+	0	Parent=Os01t0117450-00
Chr01	irgsp1_rep	three_prime_UTR	984950	985744	.	+	.	Parent=Os01t0117450-00
Chr01	irgsp1_rep	three_prime_UTR	985866	986741	.	+	.	Parent=Os01t0117450-00
Chr01	irgsp1_rep	mRNA	987676	990745	.	+	.	ID=Os01t0117500-00;Name=Os01t0117500-00;Locus_id=Os01g0117500;Note=Similar to Receptor kinase LRK10.;Transcript_evidence=AK368350 (DDBJ);ORF_evidence=Q84K89 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os01t0117500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	987676	987999	.	+	.	Parent=Os01t0117500-00
Chr01	irgsp1_rep	five_prime_UTR	988060	988104	.	+	.	Parent=Os01t0117500-00
Chr01	irgsp1_rep	CDS	988105	988450	.	+	0	Parent=Os01t0117500-00
Chr01	irgsp1_rep	CDS	989575	990647	.	+	2	Parent=Os01t0117500-00
Chr01	irgsp1_rep	three_prime_UTR	990648	990745	.	+	.	Parent=Os01t0117500-00
Chr01	irgsp1_rep	mRNA	994712	997262	.	-	.	ID=Os01t0117600-01;Name=Os01t0117600-01;Locus_id=Os01g0117600;Oryzabase Gene Name Synonym(s)=Protein kinase%2C catalytic domain containing protein;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK065867 (DDBJ%2C Best hit);ORF_evidence=B9EZ80 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013044O08;Oryzabase=20466;TENOR=Os01t0117600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	996412	997262	.	-	0	Parent=Os01t0117600-01
Chr01	irgsp1_rep	CDS	996153	996322	.	-	1	Parent=Os01t0117600-01
Chr01	irgsp1_rep	CDS	994910	996048	.	-	2	Parent=Os01t0117600-01
Chr01	irgsp1_rep	three_prime_UTR	994712	994909	.	-	.	Parent=Os01t0117600-01
Chr01	irgsp1_rep	mRNA	994955	997150	.	+	.	ID=Os01t0117650-00;Name=Os01t0117650-00;Locus_id=Os01g0117650;Note=Hypothetical protein.;Transcript_evidence=tplb0030a05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0117650-00
Chr01	irgsp1_rep	five_prime_UTR	994955	994986	.	+	.	Parent=Os01t0117650-00
Chr01	irgsp1_rep	CDS	994987	995349	.	+	0	Parent=Os01t0117650-00
Chr01	irgsp1_rep	three_prime_UTR	995350	996144	.	+	.	Parent=Os01t0117650-00
Chr01	irgsp1_rep	three_prime_UTR	996266	997150	.	+	.	Parent=Os01t0117650-00
Chr01	irgsp1_rep	mRNA	997918	1000997	.	+	.	ID=Os01t0117700-00;Name=Os01t0117700-00;Locus_id=Os01g0117700;Note=Similar to LRK14.;Transcript_evidence=ab initio prediction;ORF_evidence=Q9ATQ0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os01t0117700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	997918	998749	.	+	0	Parent=Os01t0117700-00
Chr01	irgsp1_rep	CDS	999898	1000997	.	+	2	Parent=Os01t0117700-00
Chr01	irgsp1_rep	mRNA	1010259	1011841	.	+	.	ID=Os01t0117900-01;Name=Os01t0117900-01;Locus_id=Os01g0117900;CGSNL Gene Symbol=UMAMIT1;CGSNL Gene Name=USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 1;Oryzabase Gene Symbol Synonym(s)=OsUMAMIT1;Oryzabase Gene Name Synonym(s)=Usually Multiple Acids Move In and out Transporter 1;Note=Similar to nodulin-like protein.;Transcript_evidence=AK061369 (DDBJ%2C Best hit);ORF_evidence=NP_001149629.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=006-304-D10;Oryzabase=21369;Expression=AK061369;TENOR=Os01t0117900-01;KEGG=Os01t0117900-01
Chr01	irgsp1_rep	five_prime_UTR	1010259	1010361	.	+	.	Parent=Os01t0117900-01
Chr01	irgsp1_rep	CDS	1010362	1010567	.	+	0	Parent=Os01t0117900-01
Chr01	irgsp1_rep	CDS	1010686	1010748	.	+	1	Parent=Os01t0117900-01
Chr01	irgsp1_rep	CDS	1010843	1010959	.	+	1	Parent=Os01t0117900-01
Chr01	irgsp1_rep	CDS	1011089	1011317	.	+	1	Parent=Os01t0117900-01
Chr01	irgsp1_rep	CDS	1011427	1011585	.	+	0	Parent=Os01t0117900-01
Chr01	irgsp1_rep	CDS	1011680	1011835	.	+	0	Parent=Os01t0117900-01
Chr01	irgsp1_rep	three_prime_UTR	1011836	1011841	.	+	.	Parent=Os01t0117900-01
Chr01	irgsp1_rep	mRNA	1010261	1012278	.	+	.	ID=Os01t0117900-02;Name=Os01t0117900-02;Locus_id=Os01g0117900;CGSNL Gene Symbol=UMAMIT1;CGSNL Gene Name=USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 1;Oryzabase Gene Symbol Synonym(s)=OsUMAMIT1;Oryzabase Gene Name Synonym(s)=Usually Multiple Acids Move In and out Transporter 1;Note=Similar to Nodulin-like protein 5NG4.;Transcript_evidence=AK104611 (DDBJ%2C Best hit),AK061406 (DDBJ%2C Best hit),AK104596 (DDBJ%2C Best hit);ORF_evidence=NP_001149629.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=006-309-C11,006-306-A04,006-308-E02;Oryzabase=21369;TENOR=Os01t0117900-02
Chr01	irgsp1_rep	five_prime_UTR	1010261	1010361	.	+	.	Parent=Os01t0117900-02
Chr01	irgsp1_rep	CDS	1010362	1010567	.	+	0	Parent=Os01t0117900-02
Chr01	irgsp1_rep	CDS	1010686	1010748	.	+	1	Parent=Os01t0117900-02
Chr01	irgsp1_rep	CDS	1010843	1010959	.	+	1	Parent=Os01t0117900-02
Chr01	irgsp1_rep	CDS	1011089	1011317	.	+	1	Parent=Os01t0117900-02
Chr01	irgsp1_rep	CDS	1011427	1011585	.	+	0	Parent=Os01t0117900-02
Chr01	irgsp1_rep	CDS	1011680	1011831	.	+	0	Parent=Os01t0117900-02
Chr01	irgsp1_rep	CDS	1011937	1012135	.	+	1	Parent=Os01t0117900-02
Chr01	irgsp1_rep	three_prime_UTR	1012136	1012278	.	+	.	Parent=Os01t0117900-02
Chr01	irgsp1_rep	mRNA	1010686	1012400	.	+	.	ID=Os01t0117900-03;Name=Os01t0117900-03;Locus_id=Os01g0117900;CGSNL Gene Symbol=UMAMIT1;CGSNL Gene Name=USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 1;Oryzabase Gene Symbol Synonym(s)=OsUMAMIT1;Oryzabase Gene Name Synonym(s)=Usually Multiple Acids Move In and out Transporter 1;Note=Similar to nodulin-like protein.;Transcript_evidence=AK099425 (DDBJ%2C Best hit);ORF_evidence=NP_001149629.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=J013010E01;Oryzabase=21369;Expression=AK099425;TENOR=Os01t0117900-03;KEGG=Os01t0117900-03
Chr01	irgsp1_rep	five_prime_UTR	1010686	1010686	.	+	.	Parent=Os01t0117900-03
Chr01	irgsp1_rep	CDS	1010687	1010748	.	+	0	Parent=Os01t0117900-03
Chr01	irgsp1_rep	CDS	1010843	1010959	.	+	1	Parent=Os01t0117900-03
Chr01	irgsp1_rep	CDS	1011089	1011317	.	+	1	Parent=Os01t0117900-03
Chr01	irgsp1_rep	CDS	1011427	1011585	.	+	0	Parent=Os01t0117900-03
Chr01	irgsp1_rep	CDS	1011680	1011831	.	+	0	Parent=Os01t0117900-03
Chr01	irgsp1_rep	CDS	1011937	1012135	.	+	1	Parent=Os01t0117900-03
Chr01	irgsp1_rep	three_prime_UTR	1012136	1012400	.	+	.	Parent=Os01t0117900-03
Chr01	irgsp1_rep	mRNA	1016065	1019435	.	+	.	ID=Os01t0118000-01;Name=Os01t0118000-01;Locus_id=Os01g0118000;Oryzabase Gene Name Synonym(s)=Aldolase;Note=Similar to Fructose-bisphosphate aldolase (EC 4.1.2.13) (Fragment).;Transcript_evidence=AK059097 (DDBJ%2C Best hit),AK099387 (DDBJ%2C Best hit);ORF_evidence=B9EZ83 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: fructose-bisphosphate aldolase activity (GO:0004332);InterPro=Fructose-bisphosphate aldolase%2C class-I (IPR000741),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=001-022-C06,J033075H15;Oryzabase=14449;Expression=AK059097;TENOR=Os01t0118000-01;KEGG=Os01t0118000-01 (EC:4.1.2.13)
Chr01	irgsp1_rep	five_prime_UTR	1016065	1016129	.	+	.	Parent=Os01t0118000-01
Chr01	irgsp1_rep	CDS	1016130	1016276	.	+	0	Parent=Os01t0118000-01
Chr01	irgsp1_rep	CDS	1017440	1017709	.	+	0	Parent=Os01t0118000-01
Chr01	irgsp1_rep	CDS	1017807	1017916	.	+	0	Parent=Os01t0118000-01
Chr01	irgsp1_rep	CDS	1018001	1018091	.	+	1	Parent=Os01t0118000-01
Chr01	irgsp1_rep	CDS	1018591	1018860	.	+	0	Parent=Os01t0118000-01
Chr01	irgsp1_rep	CDS	1018968	1019246	.	+	0	Parent=Os01t0118000-01
Chr01	irgsp1_rep	three_prime_UTR	1019247	1019435	.	+	.	Parent=Os01t0118000-01
Chr01	irgsp1_rep	mRNA	1016196	1017917	.	-	.	ID=Os01t0118033-00;Name=Os01t0118033-00;Locus_id=Os01g0118033;Note=Non-protein coding transcript.;Transcript_evidence=BT086897 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0118033-00
Chr01	irgsp1_rep	exon	1017805	1017917	.	-	.	Parent=Os01t0118033-00
Chr01	irgsp1_rep	exon	1017425	1017707	.	-	.	Parent=Os01t0118033-00
Chr01	irgsp1_rep	exon	1016196	1016266	.	-	.	Parent=Os01t0118033-00
Chr01	irgsp1_rep	mRNA	1021424	1025533	.	-	.	ID=Os01t0118066-01;Name=Os01t0118066-01;Locus_id=Os01g0118066;Note=Non-protein coding transcript.;Transcript_evidence=AK288733 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090063H12;TENOR=Os01t0118066-01
Chr01	irgsp1_rep	exon	1021424	1025533	.	-	.	Parent=Os01t0118066-01
Chr01	irgsp1_rep	mRNA	1024186	1030112	.	+	.	ID=Os01t0118100-01;Name=Os01t0118100-01;Locus_id=Os01g0118100;Note=Similar to Fructose-bisphosphate aldolase.;Transcript_evidence=AK242944 (DDBJ%2C Best hit);ORF_evidence=B9EZ83 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723),Molecular Function: double-stranded RNA binding (GO:0003725),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524);InterPro=Double-stranded RNA-binding (IPR001159),Helicase%2C C-terminal (IPR001650),Helicase-associated domain (IPR007502),Domain of unknown function DUF1605 (IPR011709),DEAD-like helicase (IPR014001),Double-stranded RNA-binding-like (IPR014720);NIAS_FLcDNA=J090087M20;TENOR=Os01t0118100-01;KEGG=Os01t0118100-01
Chr01	irgsp1_rep	five_prime_UTR	1024186	1024186	.	+	.	Parent=Os01t0118100-01
Chr01	irgsp1_rep	CDS	1024187	1024337	.	+	0	Parent=Os01t0118100-01
Chr01	irgsp1_rep	CDS	1024440	1024570	.	+	2	Parent=Os01t0118100-01
Chr01	irgsp1_rep	CDS	1025330	1025497	.	+	0	Parent=Os01t0118100-01
Chr01	irgsp1_rep	CDS	1025578	1025850	.	+	0	Parent=Os01t0118100-01
Chr01	irgsp1_rep	CDS	1026357	1026551	.	+	0	Parent=Os01t0118100-01
Chr01	irgsp1_rep	CDS	1026722	1026925	.	+	0	Parent=Os01t0118100-01
Chr01	irgsp1_rep	CDS	1027012	1027081	.	+	0	Parent=Os01t0118100-01
Chr01	irgsp1_rep	CDS	1027185	1027333	.	+	2	Parent=Os01t0118100-01
Chr01	irgsp1_rep	CDS	1027551	1027859	.	+	0	Parent=Os01t0118100-01
Chr01	irgsp1_rep	CDS	1028169	1028228	.	+	0	Parent=Os01t0118100-01
Chr01	irgsp1_rep	CDS	1028339	1028491	.	+	0	Parent=Os01t0118100-01
Chr01	irgsp1_rep	CDS	1028569	1028679	.	+	0	Parent=Os01t0118100-01
Chr01	irgsp1_rep	CDS	1029243	1029725	.	+	0	Parent=Os01t0118100-01
Chr01	irgsp1_rep	three_prime_UTR	1029726	1030112	.	+	.	Parent=Os01t0118100-01
Chr01	irgsp1_rep	mRNA	1046604	1053166	.	+	.	ID=Os01t0118300-01;Name=Os01t0118300-01;Locus_id=Os01g0118300;CGSNL Gene Symbol=SUI1;CGSNL Gene Name=SHORTENED UPPERMOST INTERNODE 1;Oryzabase Gene Symbol Synonym(s)=OsSUI1%2C OsPSS-1%2C PSS-1%2C OsPSS1%2C PSS1;Oryzabase Gene Name Synonym(s)=Shortened Uppermost Internode 1%2C Phosphatidylserine Synthase 1;Note=Similar to Phosphatidyl serine synthase.;Transcript_evidence=AK065788 (DDBJ%2C Best hit);ORF_evidence=E0Y3X2 (UniProt);GO=Biological Process: phosphatidylserine biosynthetic process (GO:0006659);InterPro=Phosphatidyl serine synthase (IPR004277);NIAS_FLcDNA=J013041H16;Oryzabase=11428;TENOR=Os01t0118300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	1046604	1047975	.	+	.	Parent=Os01t0118300-01
Chr01	irgsp1_rep	CDS	1047976	1048136	.	+	0	Parent=Os01t0118300-01
Chr01	irgsp1_rep	CDS	1048358	1048423	.	+	1	Parent=Os01t0118300-01
Chr01	irgsp1_rep	CDS	1048736	1048795	.	+	1	Parent=Os01t0118300-01
Chr01	irgsp1_rep	CDS	1049159	1049249	.	+	1	Parent=Os01t0118300-01
Chr01	irgsp1_rep	CDS	1050163	1050217	.	+	0	Parent=Os01t0118300-01
Chr01	irgsp1_rep	CDS	1050308	1050371	.	+	2	Parent=Os01t0118300-01
Chr01	irgsp1_rep	CDS	1050498	1050507	.	+	1	Parent=Os01t0118300-01
Chr01	irgsp1_rep	three_prime_UTR	1050508	1050624	.	+	.	Parent=Os01t0118300-01
Chr01	irgsp1_rep	three_prime_UTR	1050712	1050796	.	+	.	Parent=Os01t0118300-01
Chr01	irgsp1_rep	three_prime_UTR	1051375	1051466	.	+	.	Parent=Os01t0118300-01
Chr01	irgsp1_rep	three_prime_UTR	1051947	1052200	.	+	.	Parent=Os01t0118300-01
Chr01	irgsp1_rep	three_prime_UTR	1052592	1052680	.	+	.	Parent=Os01t0118300-01
Chr01	irgsp1_rep	three_prime_UTR	1052768	1053166	.	+	.	Parent=Os01t0118300-01
Chr01	irgsp1_rep	mRNA	1047901	1053166	.	+	.	ID=Os01t0118300-02;Name=Os01t0118300-02;Locus_id=Os01g0118300;RAP-DB Gene Symbol Synonym(s)=SUI1%2C OsSUI1%2C OsPSS-1%2C PSS-1%2C OsPSS1%2C PSS1;RAP-DB Gene Name Synonym(s)=SHORTENED UPPERMOST INTERNODE 1%2C Shortened Uppermost Internode 1%2C Phosphatidylserine Synthase 1;CGSNL Gene Symbol=SUI1;CGSNL Gene Name=SHORTENED UPPERMOST INTERNODE 1;Oryzabase Gene Symbol Synonym(s)=OsSUI1%2C OsPSS-1%2C PSS-1%2C OsPSS1%2C PSS1;Oryzabase Gene Name Synonym(s)=Shortened Uppermost Internode 1%2C Phosphatidylserine Synthase 1;Note=Phosphatidylserine synthase%2C Regulation of stem development%2C Control of cell elongation in uppermost internode;Transcript_evidence=GU564663;ORF_evidence=Q0JR55;GO=Biological Process: phosphatidylserine biosynthetic process (GO:0006659);InterPro=Phosphatidyl serine synthase (IPR004277);Manual Curation=February 24%2C 2017;Literature_PMID=27055010,22956125,21928114;Oryzabase=11428;Subcellular location=plasma membrane (GO:0005886)
Chr01	irgsp1_rep	five_prime_UTR	1047901	1047975	.	+	.	Parent=Os01t0118300-02
Chr01	irgsp1_rep	CDS	1047976	1048136	.	+	0	Parent=Os01t0118300-02
Chr01	irgsp1_rep	CDS	1048358	1048423	.	+	1	Parent=Os01t0118300-02
Chr01	irgsp1_rep	CDS	1048736	1048795	.	+	1	Parent=Os01t0118300-02
Chr01	irgsp1_rep	CDS	1049159	1049249	.	+	1	Parent=Os01t0118300-02
Chr01	irgsp1_rep	CDS	1050163	1050217	.	+	0	Parent=Os01t0118300-02
Chr01	irgsp1_rep	CDS	1050308	1050387	.	+	2	Parent=Os01t0118300-02
Chr01	irgsp1_rep	CDS	1050508	1050624	.	+	0	Parent=Os01t0118300-02
Chr01	irgsp1_rep	CDS	1050712	1050796	.	+	0	Parent=Os01t0118300-02
Chr01	irgsp1_rep	CDS	1051375	1051466	.	+	2	Parent=Os01t0118300-02
Chr01	irgsp1_rep	CDS	1051947	1052200	.	+	0	Parent=Os01t0118300-02
Chr01	irgsp1_rep	CDS	1052592	1052680	.	+	1	Parent=Os01t0118300-02
Chr01	irgsp1_rep	CDS	1052768	1052895	.	+	2	Parent=Os01t0118300-02
Chr01	irgsp1_rep	three_prime_UTR	1052896	1053166	.	+	.	Parent=Os01t0118300-02
Chr01	irgsp1_rep	mRNA	1047747	1052682	.	-	.	ID=Os01t0118350-00;Name=Os01t0118350-00;Locus_id=Os01g0118350;Note=Non-protein coding transcript.;Transcript_evidence=AK372087 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0118350-00
Chr01	irgsp1_rep	exon	1052574	1052682	.	-	.	Parent=Os01t0118350-00
Chr01	irgsp1_rep	exon	1051958	1052188	.	-	.	Parent=Os01t0118350-00
Chr01	irgsp1_rep	exon	1051360	1051471	.	-	.	Parent=Os01t0118350-00
Chr01	irgsp1_rep	exon	1050701	1050782	.	-	.	Parent=Os01t0118350-00
Chr01	irgsp1_rep	exon	1050508	1050615	.	-	.	Parent=Os01t0118350-00
Chr01	irgsp1_rep	exon	1050298	1050387	.	-	.	Parent=Os01t0118350-00
Chr01	irgsp1_rep	exon	1050151	1050207	.	-	.	Parent=Os01t0118350-00
Chr01	irgsp1_rep	exon	1049149	1049240	.	-	.	Parent=Os01t0118350-00
Chr01	irgsp1_rep	exon	1048734	1048788	.	-	.	Parent=Os01t0118350-00
Chr01	irgsp1_rep	exon	1048346	1048421	.	-	.	Parent=Os01t0118350-00
Chr01	irgsp1_rep	exon	1047747	1048127	.	-	.	Parent=Os01t0118350-00
Chr01	irgsp1_rep	mRNA	1057177	1059852	.	-	.	ID=Os01t0118400-01;Name=Os01t0118400-01;Locus_id=Os01g0118400;Note=Similar to HGA6.;Transcript_evidence=AK318611 (DDBJ%2C Best hit);ORF_evidence=Q7XZU4 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyltransferase AER61%2C uncharacterised (IPR007657);NIAS_FLcDNA=J100087B18;Oryzabase=15225;TENOR=Os01t0118400-01;KEGG=Os01t0118400-01
Chr01	irgsp1_rep	five_prime_UTR	1059731	1059852	.	-	.	Parent=Os01t0118400-01
Chr01	irgsp1_rep	CDS	1059583	1059730	.	-	0	Parent=Os01t0118400-01
Chr01	irgsp1_rep	CDS	1059263	1059433	.	-	2	Parent=Os01t0118400-01
Chr01	irgsp1_rep	CDS	1059066	1059176	.	-	2	Parent=Os01t0118400-01
Chr01	irgsp1_rep	CDS	1058895	1058966	.	-	2	Parent=Os01t0118400-01
Chr01	irgsp1_rep	CDS	1058703	1058789	.	-	2	Parent=Os01t0118400-01
Chr01	irgsp1_rep	CDS	1057403	1058574	.	-	2	Parent=Os01t0118400-01
Chr01	irgsp1_rep	three_prime_UTR	1057177	1057402	.	-	.	Parent=Os01t0118400-01
Chr01	irgsp1_rep	mRNA	1066678	1069673	.	-	.	ID=Os01t0118600-00;Name=Os01t0118600-00;Locus_id=Os01g0118600;Note=Similar to Hga5 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=D8L9R7 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyltransferase AER61%2C uncharacterised (IPR007657);Oryzabase=15226;TENOR=Os01t0118600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	1069478	1069673	.	-	0	Parent=Os01t0118600-00
Chr01	irgsp1_rep	CDS	1069213	1069344	.	-	2	Parent=Os01t0118600-00
Chr01	irgsp1_rep	CDS	1068144	1068284	.	-	2	Parent=Os01t0118600-00
Chr01	irgsp1_rep	CDS	1066678	1067891	.	-	2	Parent=Os01t0118600-00
Chr01	irgsp1_rep	mRNA	1071962	1074829	.	-	.	ID=Os01t0118700-01;Name=Os01t0118700-01;Locus_id=Os01g0118700;Note=Similar to HGA4.;Transcript_evidence=AK070385 (DDBJ%2C Best hit);ORF_evidence=Q5QPY8 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyltransferase AER61%2C uncharacterised (IPR007657);NIAS_FLcDNA=J023054L18;Oryzabase=15227;Expression=AK070385;TENOR=Os01t0118700-01;KEGG=Os01t0118700-01
Chr01	irgsp1_rep	five_prime_UTR	1074787	1074829	.	-	.	Parent=Os01t0118700-01
Chr01	irgsp1_rep	CDS	1074642	1074786	.	-	0	Parent=Os01t0118700-01
Chr01	irgsp1_rep	CDS	1074156	1074242	.	-	2	Parent=Os01t0118700-01
Chr01	irgsp1_rep	CDS	1073870	1073995	.	-	2	Parent=Os01t0118700-01
Chr01	irgsp1_rep	CDS	1072449	1073647	.	-	2	Parent=Os01t0118700-01
Chr01	irgsp1_rep	three_prime_UTR	1071962	1072448	.	-	.	Parent=Os01t0118700-01
Chr01	irgsp1_rep	mRNA	1078565	1081597	.	-	.	ID=Os01t0119000-01;Name=Os01t0119000-01;Locus_id=Os01g0119000;Note=Glycosyltransferase AER61%2C uncharacterized domain containing protein.;Transcript_evidence=AK105948 (DDBJ%2C Best hit);ORF_evidence=Q5QPY7 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyltransferase AER61%2C uncharacterised (IPR007657);NIAS_FLcDNA=001-205-C08;Oryzabase=15228;TENOR=Os01t0119000-01
Chr01	irgsp1_rep	five_prime_UTR	1081465	1081597	.	-	.	Parent=Os01t0119000-01
Chr01	irgsp1_rep	CDS	1081332	1081464	.	-	0	Parent=Os01t0119000-01
Chr01	irgsp1_rep	CDS	1081115	1081180	.	-	2	Parent=Os01t0119000-01
Chr01	irgsp1_rep	CDS	1080560	1080661	.	-	2	Parent=Os01t0119000-01
Chr01	irgsp1_rep	CDS	1078774	1079921	.	-	2	Parent=Os01t0119000-01
Chr01	irgsp1_rep	three_prime_UTR	1078565	1078773	.	-	.	Parent=Os01t0119000-01
Chr01	irgsp1_rep	mRNA	1078565	1081491	.	-	.	ID=Os01t0119000-02;Name=Os01t0119000-02;Locus_id=Os01g0119000;Note=Glycosyltransferase AER61%2C uncharacterized domain containing protein.;Transcript_evidence=AK071050 (DDBJ%2C Best hit);ORF_evidence=A2ZNN3 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyltransferase AER61%2C uncharacterised (IPR007657);NIAS_FLcDNA=J023075J12;Oryzabase=15228;TENOR=Os01t0119000-02
Chr01	irgsp1_rep	five_prime_UTR	1081465	1081491	.	-	.	Parent=Os01t0119000-02
Chr01	irgsp1_rep	CDS	1081332	1081464	.	-	0	Parent=Os01t0119000-02
Chr01	irgsp1_rep	CDS	1081115	1081180	.	-	2	Parent=Os01t0119000-02
Chr01	irgsp1_rep	CDS	1080560	1080661	.	-	2	Parent=Os01t0119000-02
Chr01	irgsp1_rep	CDS	1078774	1079921	.	-	2	Parent=Os01t0119000-02
Chr01	irgsp1_rep	three_prime_UTR	1078565	1078773	.	-	.	Parent=Os01t0119000-02
Chr01	irgsp1_rep	mRNA	1089873	1090174	.	-	.	ID=Os01t0119050-01;Name=Os01t0119050-01;Locus_id=Os01g0119050;Note=Non-protein coding transcript.;Transcript_evidence=AK242411 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080076C18;TENOR=Os01t0119050-01
Chr01	irgsp1_rep	exon	1089873	1090174	.	-	.	Parent=Os01t0119050-01
Chr01	irgsp1_rep	mRNA	1090194	1092825	.	-	.	ID=Os01t0119100-00;Name=Os01t0119100-00;Locus_id=Os01g0119100;Note=Similar to Glycosyltransferase.;Transcript_evidence=ab initio prediction;ORF_evidence=B6UFI8 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyltransferase AER61%2C uncharacterised (IPR007657);Oryzabase=15229;TENOR=Os01t0119100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	1092753	1092825	.	-	0	Parent=Os01t0119100-00
Chr01	irgsp1_rep	CDS	1092407	1092592	.	-	2	Parent=Os01t0119100-00
Chr01	irgsp1_rep	CDS	1092019	1092264	.	-	2	Parent=Os01t0119100-00
Chr01	irgsp1_rep	CDS	1090194	1091434	.	-	2	Parent=Os01t0119100-00
Chr01	irgsp1_rep	mRNA	1103782	1106890	.	+	.	ID=Os01t0119500-01;Name=Os01t0119500-01;Locus_id=Os01g0119500;Note=Protein of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK105256 (DDBJ%2C Best hit);ORF_evidence=A2ZNN6 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=001-114-F05;Expression=AK105256;TENOR=Os01t0119500-01;KEGG=Os01t0119500-01
Chr01	irgsp1_rep	five_prime_UTR	1103782	1103871	.	+	.	Parent=Os01t0119500-01
Chr01	irgsp1_rep	CDS	1103872	1105170	.	+	0	Parent=Os01t0119500-01
Chr01	irgsp1_rep	CDS	1106419	1106520	.	+	0	Parent=Os01t0119500-01
Chr01	irgsp1_rep	three_prime_UTR	1106521	1106890	.	+	.	Parent=Os01t0119500-01
Chr01	irgsp1_rep	mRNA	1125645	1127402	.	-	.	ID=Os01t0119800-01;Name=Os01t0119800-01;Locus_id=Os01g0119800;Note=Non-protein coding transcript.;Transcript_evidence=AK105502 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-127-D07;TENOR=Os01t0119800-01
Chr01	irgsp1_rep	exon	1127045	1127402	.	-	.	Parent=Os01t0119800-01
Chr01	irgsp1_rep	exon	1125645	1126732	.	-	.	Parent=Os01t0119800-01
Chr01	irgsp1_rep	mRNA	1145920	1153828	.	-	.	ID=Os01t0120300-00;Name=Os01t0120300-00;Locus_id=Os01g0120300;Note=Similar to EMB2369 (EMBRYO DEFECTIVE 2369)%3B ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding.;Transcript_evidence=AK252909 (DDBJ);ORF_evidence=NP_192344.1 (RefSeq);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: leucyl-tRNA aminoacylation (GO:0006429),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: leucine-tRNA ligase activity (GO:0004823),Molecular Function: ATP binding (GO:0005524);InterPro=Aminoacyl-tRNA synthetase%2C class Ia (IPR002300),Leucyl-tRNA synthetase%2C class Ia%2C bacterial/mitochondrial (IPR002302),Valyl/Leucyl/Isoleucyl-tRNA synthetase%2C class Ia%2C editing domain (IPR009008),Aminoacyl-tRNA synthetase%2C class 1a%2C anticodon-binding (IPR009080),Valyl/Leucyl/Isoleucyl-tRNA synthetase%2C class I%2C anticodon-binding (IPR013155),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);TENOR=Os01t0120300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	1153634	1153828	.	-	0	Parent=Os01t0120300-00
Chr01	irgsp1_rep	CDS	1153322	1153426	.	-	0	Parent=Os01t0120300-00
Chr01	irgsp1_rep	CDS	1152956	1153179	.	-	0	Parent=Os01t0120300-00
Chr01	irgsp1_rep	CDS	1152799	1152865	.	-	1	Parent=Os01t0120300-00
Chr01	irgsp1_rep	CDS	1152566	1152720	.	-	0	Parent=Os01t0120300-00
Chr01	irgsp1_rep	CDS	1151812	1152073	.	-	1	Parent=Os01t0120300-00
Chr01	irgsp1_rep	CDS	1151529	1151723	.	-	0	Parent=Os01t0120300-00
Chr01	irgsp1_rep	CDS	1151196	1151275	.	-	0	Parent=Os01t0120300-00
Chr01	irgsp1_rep	CDS	1149343	1149405	.	-	1	Parent=Os01t0120300-00
Chr01	irgsp1_rep	CDS	1149178	1149259	.	-	1	Parent=Os01t0120300-00
Chr01	irgsp1_rep	CDS	1148717	1148794	.	-	0	Parent=Os01t0120300-00
Chr01	irgsp1_rep	CDS	1148531	1148632	.	-	0	Parent=Os01t0120300-00
Chr01	irgsp1_rep	CDS	1148269	1148441	.	-	0	Parent=Os01t0120300-00
Chr01	irgsp1_rep	CDS	1148022	1148199	.	-	1	Parent=Os01t0120300-00
Chr01	irgsp1_rep	CDS	1147485	1147562	.	-	0	Parent=Os01t0120300-00
Chr01	irgsp1_rep	CDS	1146480	1146611	.	-	0	Parent=Os01t0120300-00
Chr01	irgsp1_rep	CDS	1146105	1146320	.	-	0	Parent=Os01t0120300-00
Chr01	irgsp1_rep	three_prime_UTR	1145920	1146104	.	-	.	Parent=Os01t0120300-00
Chr01	irgsp1_rep	mRNA	1155331	1158444	.	-	.	ID=Os01t0120400-01;Name=Os01t0120400-01;Locus_id=Os01g0120400;Note=Alanyl-tRNA synthetase%2C class IIc family protein.;Transcript_evidence=AK067022 (DDBJ%2C Best hit);ORF_evidence=B6TID1 (UniProt);GO=Biological Process: alanyl-tRNA aminoacylation (GO:0006419),Biological Process: tRNA aminoacylation (GO:0043039),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: alanine-tRNA ligase activity (GO:0004813),Molecular Function: ATP binding (GO:0005524),Molecular Function: ligase activity%2C forming aminoacyl-tRNA and related compounds (GO:0016876);InterPro=Threonyl/alanyl tRNA synthetase%2C SAD (IPR012947),Threonyl/alanyl tRNA synthetase%2C class II-like%2C putative editing domain (IPR018163),Alanyl-tRNA synthetase%2C class IIc%2C N-terminal (IPR018164),Alanyl-tRNA synthetase%2C class IIc%2C core domain (IPR018165);NIAS_FLcDNA=J013090K12;Expression=AK067022;TENOR=Os01t0120400-01;KEGG=Os01t0120400-01
Chr01	irgsp1_rep	five_prime_UTR	1158358	1158444	.	-	.	Parent=Os01t0120400-01
Chr01	irgsp1_rep	CDS	1158247	1158357	.	-	0	Parent=Os01t0120400-01
Chr01	irgsp1_rep	CDS	1157981	1158124	.	-	0	Parent=Os01t0120400-01
Chr01	irgsp1_rep	CDS	1157774	1157886	.	-	0	Parent=Os01t0120400-01
Chr01	irgsp1_rep	CDS	1156986	1157078	.	-	1	Parent=Os01t0120400-01
Chr01	irgsp1_rep	CDS	1156729	1156831	.	-	1	Parent=Os01t0120400-01
Chr01	irgsp1_rep	CDS	1156578	1156652	.	-	0	Parent=Os01t0120400-01
Chr01	irgsp1_rep	CDS	1156100	1156195	.	-	0	Parent=Os01t0120400-01
Chr01	irgsp1_rep	CDS	1155626	1155685	.	-	0	Parent=Os01t0120400-01
Chr01	irgsp1_rep	three_prime_UTR	1155331	1155625	.	-	.	Parent=Os01t0120400-01
Chr01	irgsp1_rep	mRNA	1155293	1158411	.	-	.	ID=Os01t0120400-02;Name=Os01t0120400-02;Locus_id=Os01g0120400;Note=Alanyl-tRNA synthetase%2C class IIc family protein.;Transcript_evidence=AK109436 (DDBJ%2C Best hit),AK104753 (DDBJ%2C Best hit);ORF_evidence=B6TID1 (UniProt);GO=Biological Process: alanyl-tRNA aminoacylation (GO:0006419),Biological Process: tRNA aminoacylation (GO:0043039),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: alanine-tRNA ligase activity (GO:0004813),Molecular Function: ATP binding (GO:0005524),Molecular Function: ligase activity%2C forming aminoacyl-tRNA and related compounds (GO:0016876);InterPro=Threonyl/alanyl tRNA synthetase%2C SAD (IPR012947),Threonyl/alanyl tRNA synthetase%2C class II-like%2C putative editing domain (IPR018163),Alanyl-tRNA synthetase%2C class IIc%2C N-terminal (IPR018164),Alanyl-tRNA synthetase%2C class IIc%2C core domain (IPR018165);NIAS_FLcDNA=006-309-G11,001-038-F08;Expression=AK109436;TENOR=Os01t0120400-02;KEGG=Os01t0120400-02
Chr01	irgsp1_rep	five_prime_UTR	1158358	1158411	.	-	.	Parent=Os01t0120400-02
Chr01	irgsp1_rep	CDS	1158247	1158357	.	-	0	Parent=Os01t0120400-02
Chr01	irgsp1_rep	CDS	1157981	1158124	.	-	0	Parent=Os01t0120400-02
Chr01	irgsp1_rep	CDS	1157774	1157886	.	-	0	Parent=Os01t0120400-02
Chr01	irgsp1_rep	CDS	1156986	1157078	.	-	1	Parent=Os01t0120400-02
Chr01	irgsp1_rep	CDS	1156729	1156831	.	-	1	Parent=Os01t0120400-02
Chr01	irgsp1_rep	CDS	1156578	1156652	.	-	0	Parent=Os01t0120400-02
Chr01	irgsp1_rep	CDS	1156100	1156195	.	-	0	Parent=Os01t0120400-02
Chr01	irgsp1_rep	CDS	1155626	1155685	.	-	0	Parent=Os01t0120400-02
Chr01	irgsp1_rep	three_prime_UTR	1155293	1155625	.	-	.	Parent=Os01t0120400-02
Chr01	irgsp1_rep	mRNA	1160198	1164619	.	-	.	ID=Os01t0120500-01;Name=Os01t0120500-01;Locus_id=Os01g0120500;Note=Similar to PAP fibrillin domain containing protein%2Cexpressed.;Transcript_evidence=AK070131 (DDBJ%2C Best hit);ORF_evidence=D8L9T8 (UniProt);NIAS_FLcDNA=J023046G14;Expression=AK070131;TENOR=Os01t0120500-01;KEGG=Os01t0120500-01
Chr01	irgsp1_rep	five_prime_UTR	1164570	1164619	.	-	.	Parent=Os01t0120500-01
Chr01	irgsp1_rep	CDS	1164336	1164569	.	-	0	Parent=Os01t0120500-01
Chr01	irgsp1_rep	CDS	1164021	1164203	.	-	0	Parent=Os01t0120500-01
Chr01	irgsp1_rep	CDS	1163832	1163891	.	-	0	Parent=Os01t0120500-01
Chr01	irgsp1_rep	CDS	1160370	1160657	.	-	0	Parent=Os01t0120500-01
Chr01	irgsp1_rep	three_prime_UTR	1160198	1160369	.	-	.	Parent=Os01t0120500-01
Chr01	irgsp1_rep	mRNA	1165737	1168396	.	+	.	ID=Os01t0120600-01;Name=Os01t0120600-01;Locus_id=Os01g0120600;Note=Similar to Oxidoreductase NAD-binding domain containing protein%2C expressed.;Transcript_evidence=AK106261 (DDBJ%2C Best hit);ORF_evidence=D8L9U1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Phenol hydroxylase reductase (IPR001221),Oxidoreductase FAD/NAD(P)-binding (IPR001433);NIAS_FLcDNA=002-100-F07;TENOR=Os01t0120600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	1165737	1165737	.	+	.	Parent=Os01t0120600-01
Chr01	irgsp1_rep	CDS	1165738	1165952	.	+	0	Parent=Os01t0120600-01
Chr01	irgsp1_rep	CDS	1166053	1166346	.	+	1	Parent=Os01t0120600-01
Chr01	irgsp1_rep	CDS	1166835	1166934	.	+	1	Parent=Os01t0120600-01
Chr01	irgsp1_rep	CDS	1167007	1167102	.	+	0	Parent=Os01t0120600-01
Chr01	irgsp1_rep	CDS	1167185	1167265	.	+	0	Parent=Os01t0120600-01
Chr01	irgsp1_rep	CDS	1167809	1167871	.	+	0	Parent=Os01t0120600-01
Chr01	irgsp1_rep	three_prime_UTR	1167872	1168396	.	+	.	Parent=Os01t0120600-01
Chr01	irgsp1_rep	mRNA	1168737	1171126	.	-	.	ID=Os01t0120700-01;Name=Os01t0120700-01;Locus_id=Os01g0120700;Note=Similar to sarcoplasmic reticulum histidine-rich calcium-binding protein.;Transcript_evidence=AK067227 (DDBJ%2C Best hit);ORF_evidence=NP_001149915.1 (RefSeq);NIAS_FLcDNA=J013098B14;Expression=AK067227;TENOR=Os01t0120700-01;KEGG=Os01t0120700-01
Chr01	irgsp1_rep	five_prime_UTR	1171013	1171126	.	-	.	Parent=Os01t0120700-01
Chr01	irgsp1_rep	five_prime_UTR	1169762	1170491	.	-	.	Parent=Os01t0120700-01
Chr01	irgsp1_rep	CDS	1168904	1169761	.	-	0	Parent=Os01t0120700-01
Chr01	irgsp1_rep	three_prime_UTR	1168737	1168903	.	-	.	Parent=Os01t0120700-01
Chr01	irgsp1_rep	mRNA	1171902	1179370	.	-	.	ID=Os01t0120800-01;Name=Os01t0120800-01;Locus_id=Os01g0120800;CGSNL Gene Symbol=EIF3A;CGSNL Gene Name=EUKARYOTIC INITIATION FACTOR 3A;Oryzabase Gene Symbol Synonym(s)=eIF-3a%2C OseIF3a;Oryzabase Gene Name Synonym(s)="eukaryotic translation initiation factor 3%2C subunit a";Note=Similar to Eukaryotic translation initiation factor 3 subunit 10 (eIF-3 theta) (Eukaryotic translation initiation factor 3 large subunit) (eIF3a).;Transcript_evidence=AK122166 (DDBJ%2C Best hit);ORF_evidence=Q70Z43 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Proteasome component (PCI) domain (IPR000717);NIAS_FLcDNA=J033147M02;Oryzabase=21022;Expression=AK122166;TENOR=Os01t0120800-01;KEGG=Os01t0120800-01
Chr01	irgsp1_rep	five_prime_UTR	1179227	1179370	.	-	.	Parent=Os01t0120800-01
Chr01	irgsp1_rep	five_prime_UTR	1178976	1179010	.	-	.	Parent=Os01t0120800-01
Chr01	irgsp1_rep	CDS	1178930	1178975	.	-	0	Parent=Os01t0120800-01
Chr01	irgsp1_rep	CDS	1178202	1178683	.	-	2	Parent=Os01t0120800-01
Chr01	irgsp1_rep	CDS	1177356	1177571	.	-	0	Parent=Os01t0120800-01
Chr01	irgsp1_rep	CDS	1176905	1177273	.	-	0	Parent=Os01t0120800-01
Chr01	irgsp1_rep	CDS	1176786	1176815	.	-	0	Parent=Os01t0120800-01
Chr01	irgsp1_rep	CDS	1176337	1176564	.	-	0	Parent=Os01t0120800-01
Chr01	irgsp1_rep	CDS	1176066	1176227	.	-	0	Parent=Os01t0120800-01
Chr01	irgsp1_rep	CDS	1174953	1175174	.	-	0	Parent=Os01t0120800-01
Chr01	irgsp1_rep	CDS	1174671	1174880	.	-	0	Parent=Os01t0120800-01
Chr01	irgsp1_rep	CDS	1173966	1174169	.	-	0	Parent=Os01t0120800-01
Chr01	irgsp1_rep	CDS	1173796	1173876	.	-	0	Parent=Os01t0120800-01
Chr01	irgsp1_rep	CDS	1173214	1173415	.	-	0	Parent=Os01t0120800-01
Chr01	irgsp1_rep	CDS	1172179	1172687	.	-	2	Parent=Os01t0120800-01
Chr01	irgsp1_rep	three_prime_UTR	1171902	1172178	.	-	.	Parent=Os01t0120800-01
Chr01	irgsp1_rep	mRNA	1178080	1179346	.	-	.	ID=Os01t0120800-02;Name=Os01t0120800-02;Locus_id=Os01g0120800;CGSNL Gene Symbol=EIF3A;CGSNL Gene Name=EUKARYOTIC INITIATION FACTOR 3A;Oryzabase Gene Symbol Synonym(s)=eIF-3a%2C OseIF3a;Oryzabase Gene Name Synonym(s)="eukaryotic translation initiation factor 3%2C subunit a";Note=Similar to Translation initiation factor 3.;Transcript_evidence=AK121302 (DDBJ%2C Best hit);ORF_evidence=Q70Z43 (UniProt);NIAS_FLcDNA=J023111A13;Oryzabase=21022;Expression=AK121302;TENOR=Os01t0120800-02;KEGG=Os01t0120800-02
Chr01	irgsp1_rep	five_prime_UTR	1179227	1179346	.	-	.	Parent=Os01t0120800-02
Chr01	irgsp1_rep	five_prime_UTR	1178976	1179010	.	-	.	Parent=Os01t0120800-02
Chr01	irgsp1_rep	CDS	1178930	1178975	.	-	0	Parent=Os01t0120800-02
Chr01	irgsp1_rep	CDS	1178100	1178683	.	-	2	Parent=Os01t0120800-02
Chr01	irgsp1_rep	three_prime_UTR	1178080	1178099	.	-	.	Parent=Os01t0120800-02
Chr01	irgsp1_rep	mRNA	1172600	1179343	.	-	.	ID=Os01t0120800-03;Name=Os01t0120800-03;Locus_id=Os01g0120800;CGSNL Gene Symbol=EIF3A;CGSNL Gene Name=EUKARYOTIC INITIATION FACTOR 3A;Oryzabase Gene Symbol Synonym(s)=eIF-3a%2C OseIF3a;Oryzabase Gene Name Synonym(s)="eukaryotic translation initiation factor 3%2C subunit a";Note=Similar to Translation initiation factor 3.;Transcript_evidence=AK106560 (DDBJ%2C Best hit);ORF_evidence=Q70Z43 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Proteasome component (PCI) domain (IPR000717);NIAS_FLcDNA=002-110-B08;Oryzabase=21022;TENOR=Os01t0120800-03
Chr01	irgsp1_rep	five_prime_UTR	1179227	1179343	.	-	.	Parent=Os01t0120800-03
Chr01	irgsp1_rep	five_prime_UTR	1178976	1179010	.	-	.	Parent=Os01t0120800-03
Chr01	irgsp1_rep	CDS	1178930	1178975	.	-	0	Parent=Os01t0120800-03
Chr01	irgsp1_rep	CDS	1178202	1178683	.	-	2	Parent=Os01t0120800-03
Chr01	irgsp1_rep	CDS	1177356	1177571	.	-	0	Parent=Os01t0120800-03
Chr01	irgsp1_rep	CDS	1176905	1177273	.	-	0	Parent=Os01t0120800-03
Chr01	irgsp1_rep	CDS	1176786	1176815	.	-	0	Parent=Os01t0120800-03
Chr01	irgsp1_rep	CDS	1176337	1176564	.	-	0	Parent=Os01t0120800-03
Chr01	irgsp1_rep	CDS	1176066	1176227	.	-	0	Parent=Os01t0120800-03
Chr01	irgsp1_rep	CDS	1174953	1175174	.	-	0	Parent=Os01t0120800-03
Chr01	irgsp1_rep	CDS	1174671	1174880	.	-	0	Parent=Os01t0120800-03
Chr01	irgsp1_rep	CDS	1173966	1174169	.	-	0	Parent=Os01t0120800-03
Chr01	irgsp1_rep	CDS	1173796	1173876	.	-	0	Parent=Os01t0120800-03
Chr01	irgsp1_rep	CDS	1173214	1173415	.	-	0	Parent=Os01t0120800-03
Chr01	irgsp1_rep	CDS	1172600	1172687	.	-	2	Parent=Os01t0120800-03
Chr01	irgsp1_rep	mRNA	1174112	1179342	.	-	.	ID=Os01t0120800-04;Name=Os01t0120800-04;Locus_id=Os01g0120800;CGSNL Gene Symbol=EIF3A;CGSNL Gene Name=EUKARYOTIC INITIATION FACTOR 3A;Oryzabase Gene Symbol Synonym(s)=eIF-3a%2C OseIF3a;Oryzabase Gene Name Synonym(s)="eukaryotic translation initiation factor 3%2C subunit a";Note=Similar to Translation initiation factor 3.;Transcript_evidence=AK073457 (DDBJ%2C Best hit);ORF_evidence=Q70Z43 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Proteasome component (PCI) domain (IPR000717);NIAS_FLcDNA=J033041I03;Oryzabase=21022;TENOR=Os01t0120800-04
Chr01	irgsp1_rep	five_prime_UTR	1179227	1179342	.	-	.	Parent=Os01t0120800-04
Chr01	irgsp1_rep	five_prime_UTR	1178976	1179010	.	-	.	Parent=Os01t0120800-04
Chr01	irgsp1_rep	CDS	1178930	1178975	.	-	0	Parent=Os01t0120800-04
Chr01	irgsp1_rep	CDS	1178202	1178683	.	-	2	Parent=Os01t0120800-04
Chr01	irgsp1_rep	CDS	1177356	1177571	.	-	0	Parent=Os01t0120800-04
Chr01	irgsp1_rep	CDS	1176905	1177273	.	-	0	Parent=Os01t0120800-04
Chr01	irgsp1_rep	CDS	1176786	1176815	.	-	0	Parent=Os01t0120800-04
Chr01	irgsp1_rep	CDS	1176337	1176564	.	-	0	Parent=Os01t0120800-04
Chr01	irgsp1_rep	CDS	1176066	1176227	.	-	0	Parent=Os01t0120800-04
Chr01	irgsp1_rep	CDS	1174953	1175174	.	-	0	Parent=Os01t0120800-04
Chr01	irgsp1_rep	CDS	1174671	1174880	.	-	0	Parent=Os01t0120800-04
Chr01	irgsp1_rep	CDS	1174112	1174169	.	-	0	Parent=Os01t0120800-04
Chr01	irgsp1_rep	mRNA	1174952	1179342	.	-	.	ID=Os01t0120800-05;Name=Os01t0120800-05;Locus_id=Os01g0120800;CGSNL Gene Symbol=EIF3A;CGSNL Gene Name=EUKARYOTIC INITIATION FACTOR 3A;Oryzabase Gene Symbol Synonym(s)=eIF-3a%2C OseIF3a;Oryzabase Gene Name Synonym(s)="eukaryotic translation initiation factor 3%2C subunit a";Note=Similar to Translation initiation factor 3.;Transcript_evidence=AK063986 (DDBJ%2C Best hit);ORF_evidence=Q70Z43 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Proteasome component (PCI) domain (IPR000717);NIAS_FLcDNA=001-124-D10;Oryzabase=21022;TENOR=Os01t0120800-05
Chr01	irgsp1_rep	five_prime_UTR	1179227	1179342	.	-	.	Parent=Os01t0120800-05
Chr01	irgsp1_rep	five_prime_UTR	1178976	1179010	.	-	.	Parent=Os01t0120800-05
Chr01	irgsp1_rep	CDS	1178930	1178975	.	-	0	Parent=Os01t0120800-05
Chr01	irgsp1_rep	CDS	1178202	1178683	.	-	2	Parent=Os01t0120800-05
Chr01	irgsp1_rep	CDS	1177356	1177571	.	-	0	Parent=Os01t0120800-05
Chr01	irgsp1_rep	CDS	1176905	1177273	.	-	0	Parent=Os01t0120800-05
Chr01	irgsp1_rep	CDS	1176786	1176815	.	-	0	Parent=Os01t0120800-05
Chr01	irgsp1_rep	CDS	1176337	1176564	.	-	0	Parent=Os01t0120800-05
Chr01	irgsp1_rep	CDS	1176066	1176227	.	-	0	Parent=Os01t0120800-05
Chr01	irgsp1_rep	CDS	1174952	1175174	.	-	0	Parent=Os01t0120800-05
Chr01	irgsp1_rep	mRNA	1171913	1174041	.	-	.	ID=Os01t0120800-06;Name=Os01t0120800-06;Locus_id=Os01g0120800;CGSNL Gene Symbol=EIF3A;CGSNL Gene Name=EUKARYOTIC INITIATION FACTOR 3A;Oryzabase Gene Symbol Synonym(s)=eIF-3a%2C OseIF3a;Oryzabase Gene Name Synonym(s)="eukaryotic translation initiation factor 3%2C subunit a";Note=Similar to Translation initiation factor 3.;Transcript_evidence=AK072604 (DDBJ%2C Best hit);ORF_evidence=Q70Z43 (UniProt);NIAS_FLcDNA=J023125H08;Oryzabase=21022;Expression=AK072604;TENOR=Os01t0120800-06;KEGG=Os01t0120800-06
Chr01	irgsp1_rep	five_prime_UTR	1174041	1174041	.	-	.	Parent=Os01t0120800-06
Chr01	irgsp1_rep	CDS	1173966	1174040	.	-	0	Parent=Os01t0120800-06
Chr01	irgsp1_rep	CDS	1173796	1173876	.	-	0	Parent=Os01t0120800-06
Chr01	irgsp1_rep	CDS	1173214	1173415	.	-	0	Parent=Os01t0120800-06
Chr01	irgsp1_rep	CDS	1172179	1172687	.	-	2	Parent=Os01t0120800-06
Chr01	irgsp1_rep	three_prime_UTR	1171913	1172178	.	-	.	Parent=Os01t0120800-06
Chr01	irgsp1_rep	mRNA	1181317	1182147	.	+	.	ID=Os01t0121000-01;Name=Os01t0121000-01;Locus_id=Os01g0121000;Note=Conserved hypothetical protein.;Transcript_evidence=AK110709 (DDBJ%2C Best hit);ORF_evidence=A2WK20 (UniProt);NIAS_FLcDNA=002-170-C11;Expression=AK110709;TENOR=Os01t0121000-01;KEGG=Os01t0121000-01
Chr01	irgsp1_rep	five_prime_UTR	1181317	1181353	.	+	.	Parent=Os01t0121000-01
Chr01	irgsp1_rep	CDS	1181354	1181959	.	+	0	Parent=Os01t0121000-01
Chr01	irgsp1_rep	three_prime_UTR	1181960	1182147	.	+	.	Parent=Os01t0121000-01
Chr01	irgsp1_rep	mRNA	1183466	1186647	.	+	.	ID=Os01t0121100-01;Name=Os01t0121100-01;Locus_id=Os01g0121100;Note=Similar to SLL2.;Transcript_evidence=AK100063 (DDBJ%2C Best hit);ORF_evidence=D8L9U8 (UniProt);NIAS_FLcDNA=J013160I04;Expression=AK100063;TENOR=Os01t0121100-01;KEGG=Os01t0121100-01
Chr01	irgsp1_rep	five_prime_UTR	1183466	1183466	.	+	.	Parent=Os01t0121100-01
Chr01	irgsp1_rep	CDS	1183467	1183545	.	+	0	Parent=Os01t0121100-01
Chr01	irgsp1_rep	CDS	1183751	1183817	.	+	2	Parent=Os01t0121100-01
Chr01	irgsp1_rep	CDS	1184024	1184152	.	+	1	Parent=Os01t0121100-01
Chr01	irgsp1_rep	CDS	1184582	1184716	.	+	1	Parent=Os01t0121100-01
Chr01	irgsp1_rep	CDS	1185296	1185392	.	+	1	Parent=Os01t0121100-01
Chr01	irgsp1_rep	CDS	1185633	1185736	.	+	0	Parent=Os01t0121100-01
Chr01	irgsp1_rep	CDS	1185924	1185975	.	+	1	Parent=Os01t0121100-01
Chr01	irgsp1_rep	CDS	1186261	1186458	.	+	0	Parent=Os01t0121100-01
Chr01	irgsp1_rep	three_prime_UTR	1186459	1186647	.	+	.	Parent=Os01t0121100-01
Chr01	irgsp1_rep	mRNA	1183466	1186699	.	+	.	ID=Os01t0121100-02;Name=Os01t0121100-02;Locus_id=Os01g0121100;Note=Similar to SLL2.;Transcript_evidence=AK071475 (DDBJ%2C Best hit);ORF_evidence=D8L9U8 (UniProt);NIAS_FLcDNA=J023091F21;Expression=AK071475;TENOR=Os01t0121100-02;KEGG=Os01t0121100-02
Chr01	irgsp1_rep	five_prime_UTR	1183466	1183503	.	+	.	Parent=Os01t0121100-02
Chr01	irgsp1_rep	CDS	1183504	1183817	.	+	0	Parent=Os01t0121100-02
Chr01	irgsp1_rep	CDS	1184024	1184152	.	+	1	Parent=Os01t0121100-02
Chr01	irgsp1_rep	CDS	1184582	1184716	.	+	1	Parent=Os01t0121100-02
Chr01	irgsp1_rep	CDS	1185296	1185392	.	+	1	Parent=Os01t0121100-02
Chr01	irgsp1_rep	CDS	1185633	1185736	.	+	0	Parent=Os01t0121100-02
Chr01	irgsp1_rep	CDS	1185924	1185975	.	+	1	Parent=Os01t0121100-02
Chr01	irgsp1_rep	CDS	1186261	1186458	.	+	0	Parent=Os01t0121100-02
Chr01	irgsp1_rep	three_prime_UTR	1186459	1186699	.	+	.	Parent=Os01t0121100-02
Chr01	irgsp1_rep	mRNA	1186667	1191013	.	-	.	ID=Os01t0121200-01;Name=Os01t0121200-01;Locus_id=Os01g0121200;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK108601 (DDBJ%2C Best hit);ORF_evidence=D8L9U9 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-CH-type (IPR011016),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Protein of unknown function DUF3675 (IPR022143);NIAS_FLcDNA=002-146-E11;Expression=AK108601;TENOR=Os01t0121200-01;KEGG=Os01t0121200-01
Chr01	irgsp1_rep	five_prime_UTR	1190979	1191013	.	-	.	Parent=Os01t0121200-01
Chr01	irgsp1_rep	five_prime_UTR	1190774	1190862	.	-	.	Parent=Os01t0121200-01
Chr01	irgsp1_rep	five_prime_UTR	1189342	1189346	.	-	.	Parent=Os01t0121200-01
Chr01	irgsp1_rep	CDS	1189108	1189341	.	-	0	Parent=Os01t0121200-01
Chr01	irgsp1_rep	CDS	1188323	1188394	.	-	0	Parent=Os01t0121200-01
Chr01	irgsp1_rep	CDS	1188100	1188167	.	-	0	Parent=Os01t0121200-01
Chr01	irgsp1_rep	CDS	1187843	1187993	.	-	1	Parent=Os01t0121200-01
Chr01	irgsp1_rep	CDS	1187640	1187720	.	-	0	Parent=Os01t0121200-01
Chr01	irgsp1_rep	CDS	1187437	1187526	.	-	0	Parent=Os01t0121200-01
Chr01	irgsp1_rep	CDS	1187129	1187242	.	-	0	Parent=Os01t0121200-01
Chr01	irgsp1_rep	three_prime_UTR	1186667	1187128	.	-	.	Parent=Os01t0121200-01
Chr01	irgsp1_rep	mRNA	1198687	1203502	.	-	.	ID=Os01t0121300-01;Name=Os01t0121300-01;Locus_id=Os01g0121300;Note=Conserved hypothetical protein.;Transcript_evidence=AK103404 (DDBJ%2C Best hit);ORF_evidence=B8ACZ7 (UniProt);NIAS_FLcDNA=J033128C16;Expression=AK103404;TENOR=Os01t0121300-01;KEGG=Os01t0121300-01
Chr01	irgsp1_rep	five_prime_UTR	1203375	1203502	.	-	.	Parent=Os01t0121300-01
Chr01	irgsp1_rep	CDS	1203245	1203374	.	-	0	Parent=Os01t0121300-01
Chr01	irgsp1_rep	CDS	1202020	1202213	.	-	2	Parent=Os01t0121300-01
Chr01	irgsp1_rep	CDS	1201293	1201465	.	-	0	Parent=Os01t0121300-01
Chr01	irgsp1_rep	CDS	1200844	1201128	.	-	1	Parent=Os01t0121300-01
Chr01	irgsp1_rep	CDS	1200527	1200585	.	-	1	Parent=Os01t0121300-01
Chr01	irgsp1_rep	CDS	1200384	1200420	.	-	2	Parent=Os01t0121300-01
Chr01	irgsp1_rep	CDS	1200221	1200292	.	-	1	Parent=Os01t0121300-01
Chr01	irgsp1_rep	CDS	1199518	1199821	.	-	1	Parent=Os01t0121300-01
Chr01	irgsp1_rep	CDS	1198988	1199356	.	-	0	Parent=Os01t0121300-01
Chr01	irgsp1_rep	three_prime_UTR	1198687	1198987	.	-	.	Parent=Os01t0121300-01
Chr01	irgsp1_rep	mRNA	1198958	1203465	.	+	.	ID=Os01t0121400-00;Name=Os01t0121400-00;Locus_id=Os01g0121400;Note=Hypothetical protein.;Transcript_evidence=tplb0026h09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0121400-00
Chr01	irgsp1_rep	five_prime_UTR	1198958	1199344	.	+	.	Parent=Os01t0121400-00
Chr01	irgsp1_rep	five_prime_UTR	1199500	1199845	.	+	.	Parent=Os01t0121400-00
Chr01	irgsp1_rep	five_prime_UTR	1200247	1200315	.	+	.	Parent=Os01t0121400-00
Chr01	irgsp1_rep	five_prime_UTR	1200513	1200587	.	+	.	Parent=Os01t0121400-00
Chr01	irgsp1_rep	five_prime_UTR	1200847	1201099	.	+	.	Parent=Os01t0121400-00
Chr01	irgsp1_rep	five_prime_UTR	1201260	1201451	.	+	.	Parent=Os01t0121400-00
Chr01	irgsp1_rep	five_prime_UTR	1202010	1202041	.	+	.	Parent=Os01t0121400-00
Chr01	irgsp1_rep	CDS	1202042	1202224	.	+	0	Parent=Os01t0121400-00
Chr01	irgsp1_rep	CDS	1203230	1203439	.	+	0	Parent=Os01t0121400-00
Chr01	irgsp1_rep	three_prime_UTR	1203440	1203465	.	+	.	Parent=Os01t0121400-00
Chr01	irgsp1_rep	mRNA	1217319	1218116	.	-	.	ID=Os01t0121500-01;Name=Os01t0121500-01;Locus_id=Os01g0121500;Note=Conserved hypothetical protein.;Transcript_evidence=AK107776 (DDBJ%2C Best hit);ORF_evidence=A2WK24 (UniProt);NIAS_FLcDNA=002-133-C01;TENOR=Os01t0121500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	1218009	1218116	.	-	.	Parent=Os01t0121500-01
Chr01	irgsp1_rep	CDS	1217945	1218008	.	-	0	Parent=Os01t0121500-01
Chr01	irgsp1_rep	CDS	1217480	1217778	.	-	2	Parent=Os01t0121500-01
Chr01	irgsp1_rep	three_prime_UTR	1217319	1217479	.	-	.	Parent=Os01t0121500-01
Chr01	irgsp1_rep	mRNA	1223134	1223887	.	-	.	ID=Os01t0121600-01;Name=Os01t0121600-01;Locus_id=Os01g0121600;CGSNL Gene Symbol=ABCG1;CGSNL Gene Name=ABC TRANSPORTER G FAMILY MEMBER 1;Oryzabase Gene Symbol Synonym(s)=OsABCG1;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 1;Note=Conserved hypothetical protein.;Transcript_evidence=AK243657 (DDBJ%2C Best hit);ORF_evidence=NP_001041877.2 (RefSeq);NIAS_FLcDNA=J100088N03;Oryzabase=11981;TENOR=Os01t0121600-01;KEGG=Os01t0121600-01
Chr01	irgsp1_rep	five_prime_UTR	1223792	1223887	.	-	.	Parent=Os01t0121600-01
Chr01	irgsp1_rep	CDS	1223348	1223791	.	-	0	Parent=Os01t0121600-01
Chr01	irgsp1_rep	three_prime_UTR	1223134	1223347	.	-	.	Parent=Os01t0121600-01
Chr01	irgsp1_rep	mRNA	1224012	1230500	.	-	.	ID=Os01t0121700-01;Name=Os01t0121700-01;Locus_id=Os01g0121700;Note=ABC transporter-like domain containing protein.;Transcript_evidence=AK120079 (DDBJ%2C Best hit);ORF_evidence=NP_001151994.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC-2 type transporter (IPR013525),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=J013012G06;Expression=AK120079;TENOR=Os01t0121700-01;KEGG=Os01t0121700-01
Chr01	irgsp1_rep	five_prime_UTR	1230383	1230500	.	-	.	Parent=Os01t0121700-01
Chr01	irgsp1_rep	CDS	1230167	1230382	.	-	0	Parent=Os01t0121700-01
Chr01	irgsp1_rep	CDS	1229484	1229674	.	-	0	Parent=Os01t0121700-01
Chr01	irgsp1_rep	CDS	1229241	1229391	.	-	1	Parent=Os01t0121700-01
Chr01	irgsp1_rep	CDS	1228779	1228911	.	-	0	Parent=Os01t0121700-01
Chr01	irgsp1_rep	CDS	1227887	1228088	.	-	2	Parent=Os01t0121700-01
Chr01	irgsp1_rep	CDS	1227218	1227494	.	-	1	Parent=Os01t0121700-01
Chr01	irgsp1_rep	CDS	1226511	1226642	.	-	0	Parent=Os01t0121700-01
Chr01	irgsp1_rep	CDS	1226114	1226334	.	-	0	Parent=Os01t0121700-01
Chr01	irgsp1_rep	CDS	1225763	1225975	.	-	1	Parent=Os01t0121700-01
Chr01	irgsp1_rep	CDS	1225578	1225662	.	-	1	Parent=Os01t0121700-01
Chr01	irgsp1_rep	CDS	1225084	1225269	.	-	0	Parent=Os01t0121700-01
Chr01	irgsp1_rep	three_prime_UTR	1225054	1225083	.	-	.	Parent=Os01t0121700-01
Chr01	irgsp1_rep	three_prime_UTR	1224012	1224326	.	-	.	Parent=Os01t0121700-01
Chr01	irgsp1_rep	mRNA	1232493	1236748	.	+	.	ID=Os01t0121800-01;Name=Os01t0121800-01;Locus_id=Os01g0121800;Note=Glycosyl transferase%2C family 14 protein.;Transcript_evidence=AK105432 (DDBJ%2C Best hit),AK073465 (DDBJ%2C Best hit);ORF_evidence=NP_001152461.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020),Molecular Function: acetylglucosaminyltransferase activity (GO:0008375);InterPro=Glycosyl transferase%2C family 14 (IPR003406);NIAS_FLcDNA=001-124-F04,J033043K22;TENOR=Os01t0121800-01
Chr01	irgsp1_rep	five_prime_UTR	1232493	1232686	.	+	.	Parent=Os01t0121800-01
Chr01	irgsp1_rep	CDS	1232687	1233188	.	+	0	Parent=Os01t0121800-01
Chr01	irgsp1_rep	CDS	1235489	1235564	.	+	2	Parent=Os01t0121800-01
Chr01	irgsp1_rep	CDS	1235646	1235757	.	+	1	Parent=Os01t0121800-01
Chr01	irgsp1_rep	CDS	1235837	1236355	.	+	0	Parent=Os01t0121800-01
Chr01	irgsp1_rep	three_prime_UTR	1236356	1236748	.	+	.	Parent=Os01t0121800-01
Chr01	irgsp1_rep	mRNA	1235881	1236760	.	+	.	ID=Os01t0121800-02;Name=Os01t0121800-02;Locus_id=Os01g0121800;Note=Similar to xylosyltransferase 1.;Transcript_evidence=AK069510 (DDBJ%2C Best hit);ORF_evidence=NP_001152461.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020),Molecular Function: acetylglucosaminyltransferase activity (GO:0008375);InterPro=Glycosyl transferase%2C family 14 (IPR003406);NIAS_FLcDNA=J023020H01;Expression=AK069510;TENOR=Os01t0121800-02;KEGG=Os01t0121800-02
Chr01	irgsp1_rep	five_prime_UTR	1235881	1235881	.	+	.	Parent=Os01t0121800-02
Chr01	irgsp1_rep	CDS	1235882	1236355	.	+	0	Parent=Os01t0121800-02
Chr01	irgsp1_rep	three_prime_UTR	1236356	1236760	.	+	.	Parent=Os01t0121800-02
Chr01	irgsp1_rep	mRNA	1238623	1240005	.	+	.	ID=Os01t0121900-00;Name=Os01t0121900-00;Locus_id=Os01g0121900;Note=Seven-in-absentia protein%2C sina domain containing protein.;Transcript_evidence=tplb0010l05 (Wheat FLcDNA);ORF_evidence=NP_001172150.1 (RefSeq);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Biological Process: multicellular organismal development (GO:0007275),Biological Process: protein ubiquitination (GO:0016567),Cellular Component: nucleus (GO:0005634),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Seven-in-absentia protein%2C sina (IPR004162),TRAF-like (IPR008974),Zinc finger%2C SIAH-type (IPR013010),Seven In Absentia Homolog-type (IPR013323),Seven-in-absentia protein%2C TRAF-like domain (IPR018121);TENOR=Os01t0121900-00
Chr01	irgsp1_rep	CDS	1238623	1238820	.	+	0	Parent=Os01t0121900-00
Chr01	irgsp1_rep	CDS	1239313	1240005	.	+	0	Parent=Os01t0121900-00
Chr01	irgsp1_rep	mRNA	1240943	1242391	.	+	.	ID=Os01t0121950-00;Name=Os01t0121950-00;Locus_id=Os01g0121950;Note=Hypothetical conserved gene.;Transcript_evidence=AK371775 (DDBJ);ORF_evidence=NP_001172150.1 (RefSeq);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Biological Process: multicellular organismal development (GO:0007275),Biological Process: protein ubiquitination (GO:0016567),Cellular Component: nucleus (GO:0005634),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Seven-in-absentia protein%2C sina (IPR004162),TRAF-like (IPR008974),Zinc finger%2C SIAH-type (IPR013010),Seven In Absentia Homolog-type (IPR013323),Seven-in-absentia protein%2C TRAF-like domain (IPR018121);TENOR=Os01t0121950-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	1240943	1241308	.	+	0	Parent=Os01t0121950-00
Chr01	irgsp1_rep	CDS	1241614	1242351	.	+	0	Parent=Os01t0121950-00
Chr01	irgsp1_rep	three_prime_UTR	1242352	1242391	.	+	.	Parent=Os01t0121950-00
Chr01	irgsp1_rep	mRNA	1249881	1251421	.	+	.	ID=Os01t0122000-01;Name=Os01t0122000-01;Locus_id=Os01g0122000;Oryzabase Gene Symbol Synonym(s)=OsPR5%2C PR5;Note=Conserved hypothetical protein.;Transcript_evidence=AK109465 (DDBJ%2C Best hit);ORF_evidence=A2ZNQ2 (UniProt);NIAS_FLcDNA=001-127-G01;Oryzabase=21716;Expression=AK109465;TENOR=Os01t0122000-01;KEGG=Os01t0122000-01
Chr01	irgsp1_rep	five_prime_UTR	1249881	1250080	.	+	.	Parent=Os01t0122000-01
Chr01	irgsp1_rep	CDS	1250081	1251034	.	+	0	Parent=Os01t0122000-01
Chr01	irgsp1_rep	three_prime_UTR	1251035	1251421	.	+	.	Parent=Os01t0122000-01
Chr01	irgsp1_rep	mRNA	1254028	1255635	.	+	.	ID=Os01t0122200-01;Name=Os01t0122200-01;Locus_id=Os01g0122200;Note=Seven In Absentia Homolog-type domain containing protein.;Transcript_evidence=AK107171 (DDBJ%2C Best hit);ORF_evidence=A2WK31 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Biological Process: multicellular organismal development (GO:0007275),Biological Process: protein ubiquitination (GO:0016567),Cellular Component: nucleus (GO:0005634),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Seven-in-absentia protein%2C sina (IPR004162),TRAF-like (IPR008974),Zinc finger%2C SIAH-type (IPR013010),Seven In Absentia Homolog-type (IPR013323),Seven-in-absentia protein%2C TRAF-like domain (IPR018121);NIAS_FLcDNA=002-124-G03;Expression=AK107171;TENOR=Os01t0122200-01;KEGG=Os01t0122200-01
Chr01	irgsp1_rep	five_prime_UTR	1254028	1254083	.	+	.	Parent=Os01t0122200-01
Chr01	irgsp1_rep	five_prime_UTR	1254208	1254255	.	+	.	Parent=Os01t0122200-01
Chr01	irgsp1_rep	CDS	1254256	1254534	.	+	0	Parent=Os01t0122200-01
Chr01	irgsp1_rep	CDS	1254625	1255359	.	+	0	Parent=Os01t0122200-01
Chr01	irgsp1_rep	three_prime_UTR	1255360	1255635	.	+	.	Parent=Os01t0122200-01
Chr01	irgsp1_rep	mRNA	1254331	1255339	.	-	.	ID=Os01t0122367-00;Name=Os01t0122367-00;Locus_id=Os01g0122367;Note=Hypothetical protein.;Transcript_evidence=AK365307 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0122367-00
Chr01	irgsp1_rep	five_prime_UTR	1254559	1255339	.	-	.	Parent=Os01t0122367-00
Chr01	irgsp1_rep	CDS	1254331	1254558	.	-	0	Parent=Os01t0122367-00
Chr01	irgsp1_rep	mRNA	1264331	1265206	.	-	.	ID=Os01t0122534-00;Name=Os01t0122534-00;Locus_id=Os01g0122534;Note=Hypothetical protein.;Transcript_evidence=AK365307 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0122534-00
Chr01	irgsp1_rep	five_prime_UTR	1265135	1265206	.	-	.	Parent=Os01t0122534-00
Chr01	irgsp1_rep	CDS	1264790	1265134	.	-	0	Parent=Os01t0122534-00
Chr01	irgsp1_rep	three_prime_UTR	1264331	1264789	.	-	.	Parent=Os01t0122534-00
Chr01	irgsp1_rep	mRNA	1264968	1265273	.	+	.	ID=Os01t0122701-00;Name=Os01t0122701-00;Locus_id=Os01g0122701;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001041882.1 (RefSeq);TENOR=Os01t0122701-00
Chr01	irgsp1_rep	CDS	1264968	1265273	.	+	0	Parent=Os01t0122701-00
Chr01	irgsp1_rep	mRNA	1328172	1329191	.	+	.	ID=Os01t0123500-00;Name=Os01t0123500-00;Locus_id=Os01g0123500;Note=Conserved hypothetical protein.;Transcript_evidence=EU963819 (DDBJ);ORF_evidence=Q5ZCB5 (UniProt);TENOR=Os01t0123500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	1328172	1328405	.	+	0	Parent=Os01t0123500-00
Chr01	irgsp1_rep	CDS	1328491	1328688	.	+	0	Parent=Os01t0123500-00
Chr01	irgsp1_rep	three_prime_UTR	1328689	1329191	.	+	.	Parent=Os01t0123500-00
Chr01	irgsp1_rep	mRNA	1333752	1334769	.	-	.	ID=Os01t0123700-00;Name=Os01t0123700-00;Locus_id=Os01g0123700;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=EU965920 (DDBJ);ORF_evidence=Q5ZCB3 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Biological Process: multicellular organismal development (GO:0007275),Biological Process: protein ubiquitination (GO:0016567),Cellular Component: nucleus (GO:0005634),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Seven-in-absentia protein%2C sina (IPR004162),TRAF-like (IPR008974),Zinc finger%2C SIAH-type (IPR013010),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Seven In Absentia Homolog-type (IPR013323),Seven-in-absentia protein%2C TRAF-like domain (IPR018121);TENOR=Os01t0123700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	1334557	1334769	.	-	0	Parent=Os01t0123700-00
Chr01	irgsp1_rep	CDS	1333752	1334447	.	-	0	Parent=Os01t0123700-00
Chr01	irgsp1_rep	mRNA	1335864	1337407	.	+	.	ID=Os01t0123800-00;Name=Os01t0123800-00;Locus_id=Os01g0123800;Note=Seven-in-absentia protein%2C sina domain containing protein.;Transcript_evidence=tplb0016p16 (Wheat FLcDNA);ORF_evidence=Q9ARS6 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Biological Process: multicellular organismal development (GO:0007275),Biological Process: protein ubiquitination (GO:0016567),Cellular Component: nucleus (GO:0005634),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Seven-in-absentia protein%2C sina (IPR004162),TRAF-like (IPR008974),Zinc finger%2C SIAH-type (IPR013010),Seven In Absentia Homolog-type (IPR013323),Seven-in-absentia protein%2C TRAF-like domain (IPR018121);TENOR=Os01t0123800-00
Chr01	irgsp1_rep	CDS	1335864	1336340	.	+	0	Parent=Os01t0123800-00
Chr01	irgsp1_rep	CDS	1336724	1337407	.	+	0	Parent=Os01t0123800-00
Chr01	irgsp1_rep	mRNA	1338241	1339098	.	-	.	ID=Os01t0123900-01;Name=Os01t0123900-01;Locus_id=Os01g0123900;CGSNL Gene Symbol=RBBI2-2;CGSNL Gene Name=BOWMAN-BIRK INHIBITOR 2-2;Oryzabase Gene Symbol Synonym(s)=RBBI2-2;Note=Similar to Bowman-Birk type proteinase inhibitor (EBI).;Transcript_evidence=AK070467 (DDBJ%2C Best hit),AK104410 (DDBJ%2C Best hit),AK104671 (DDBJ%2C Best hit);ORF_evidence=Q5ZCB2 (UniProt);GO=Cellular Component: extracellular region (GO:0005576),Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Proteinase inhibitor I12%2C Bowman-Birk (IPR000877);NIAS_FLcDNA=J023053A08,006-203-G05,001-025-D04;Oryzabase=12537;Expression=AK070467;TENOR=Os01t0123900-01;KEGG=Os01t0123900-01
Chr01	irgsp1_rep	five_prime_UTR	1339076	1339098	.	-	.	Parent=Os01t0123900-01
Chr01	irgsp1_rep	CDS	1338494	1339075	.	-	0	Parent=Os01t0123900-01
Chr01	irgsp1_rep	three_prime_UTR	1338241	1338493	.	-	.	Parent=Os01t0123900-01
Chr01	irgsp1_rep	mRNA	1341368	1342277	.	-	.	ID=Os01t0124000-01;Name=Os01t0124000-01;Locus_id=Os01g0124000;CGSNL Gene Symbol=RBBI2-1;CGSNL Gene Name=BOWMAN-BIRK INHIBITOR 2-1;Oryzabase Gene Symbol Synonym(s)=RBBI2-1;Note=Similar to Bowman Birk trypsin inhibitor.;Transcript_evidence=AK065846 (DDBJ%2C Best hit);ORF_evidence=B8AD05 (UniProt);GO=Cellular Component: extracellular region (GO:0005576),Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Proteinase inhibitor I12%2C Bowman-Birk (IPR000877);NIAS_FLcDNA=J013042O18;Oryzabase=12536;Expression=AK065846;TENOR=Os01t0124000-01;KEGG=Os01t0124000-01
Chr01	irgsp1_rep	five_prime_UTR	1342182	1342277	.	-	.	Parent=Os01t0124000-01
Chr01	irgsp1_rep	CDS	1341621	1342181	.	-	0	Parent=Os01t0124000-01
Chr01	irgsp1_rep	three_prime_UTR	1341368	1341620	.	-	.	Parent=Os01t0124000-01
Chr01	irgsp1_rep	mRNA	1345118	1346047	.	-	.	ID=Os01t0124100-01;Name=Os01t0124100-01;Locus_id=Os01g0124100;CGSNL Gene Symbol=RBBI3-2;CGSNL Gene Name=BOWMAN-BIRK INHIBITOR 3-2;Oryzabase Gene Symbol Synonym(s)=RBBI3-2;Note=Proteinase inhibitor I12%2C Bowman-Birk family protein.;Transcript_evidence=AK062394 (DDBJ%2C Best hit);ORF_evidence=A5HEI2 (UniProt);GO=Cellular Component: extracellular region (GO:0005576),Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Proteinase inhibitor I12%2C Bowman-Birk (IPR000877);NIAS_FLcDNA=001-102-D05;Oryzabase=12534;Expression=AK062394;TENOR=Os01t0124100-01;KEGG=Os01t0124100-01
Chr01	irgsp1_rep	five_prime_UTR	1346027	1346047	.	-	.	Parent=Os01t0124100-01
Chr01	irgsp1_rep	CDS	1345247	1346026	.	-	0	Parent=Os01t0124100-01
Chr01	irgsp1_rep	three_prime_UTR	1345118	1345246	.	-	.	Parent=Os01t0124100-01
Chr01	irgsp1_rep	mRNA	1347665	1348723	.	-	.	ID=Os01t0124200-02;Name=Os01t0124200-02;Locus_id=Os01g0124200;RAP-DB Gene Symbol Synonym(s)=APIP4;RAP-DB Gene Name Synonym(s)=AvrPiz-t Interacting Protein 4;CGSNL Gene Symbol=RBBI3-1;CGSNL Gene Name=BOWMAN-BIRK INHIBITOR 3-1;Oryzabase Gene Symbol Synonym(s)=RBBI3-1%2C OsBBTI4%2C BBTI4%2C IBP1.1%2C RBBTI4;Oryzabase Gene Name Synonym(s)=Bowman-Birk type bran trypsin inhibitor 4;Note=Bowman-Birk type trypsin inhibitor%2C Target of a fungal effector and an NLR receptor for innate immunity%2C Resistance to fungal pathogen M. oryzae;Transcript_evidence=AK104367,AK067257,AK104110;ORF_evidence=A5HEI2;GO=Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867),Cellular Component: extracellular region (GO:0005576);InterPro=Bowman-Birk type proteinase inhibitor (IPR035995),Proteinase inhibitor I12%2C Bowman-Birk (IPR000877);NIAS_FLcDNA=001-035-D09,J013096H09,006-202-G03;Manual Curation=May 19%2C 2020;Literature_PMID=32415911;Oryzabase=12533;TENOR=Os01t0124200-02;KEGG=Os01t0124200-02;Subcellular location=cytoplasm (GO:0005737)
Chr01	irgsp1_rep	five_prime_UTR	1348698	1348723	.	-	.	Parent=Os01t0124200-02
Chr01	irgsp1_rep	CDS	1347942	1348697	.	-	0	Parent=Os01t0124200-02
Chr01	irgsp1_rep	three_prime_UTR	1347665	1347941	.	-	.	Parent=Os01t0124200-02
Chr01	irgsp1_rep	mRNA	1353705	1354767	.	-	.	ID=Os01t0124401-01;Name=Os01t0124401-01;Locus_id=Os01g0124401;CGSNL Gene Symbol=RBBI3-3;CGSNL Gene Name=BOWMAN-BIRK INHIBITOR 3-3;Oryzabase Gene Symbol Synonym(s)=RBBI3-3%2C OsBBPI%2C BBPI;Oryzabase Gene Name Synonym(s)=Bowman-Birk protease inhibitor%2C Bowman-Birk proteinase inhibitor;Note=Similar to Bowman-Birk type bran trypsin inhibitor.;Transcript_evidence=AK243607 (DDBJ%2C Best hit);ORF_evidence=Q0JR25 (UniProt);GO=Cellular Component: extracellular region (GO:0005576),Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Proteinase inhibitor I12%2C Bowman-Birk (IPR000877);NIAS_FLcDNA=J100085E21;Oryzabase=12535;TENOR=Os01t0124401-01;KEGG=Os01t0124401-01
Chr01	irgsp1_rep	five_prime_UTR	1354747	1354767	.	-	.	Parent=Os01t0124401-01
Chr01	irgsp1_rep	CDS	1353982	1354746	.	-	0	Parent=Os01t0124401-01
Chr01	irgsp1_rep	three_prime_UTR	1353705	1353981	.	-	.	Parent=Os01t0124401-01
Chr01	irgsp1_rep	mRNA	1356759	1361044	.	+	.	ID=Os01t0124550-00;Name=Os01t0124550-00;Locus_id=Os01g0124550;Note=Hypothetical protein.;Transcript_evidence=tplb0062a03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0124550-00
Chr01	irgsp1_rep	five_prime_UTR	1356759	1357098	.	+	.	Parent=Os01t0124550-00
Chr01	irgsp1_rep	five_prime_UTR	1357193	1357378	.	+	.	Parent=Os01t0124550-00
Chr01	irgsp1_rep	five_prime_UTR	1357990	1358058	.	+	.	Parent=Os01t0124550-00
Chr01	irgsp1_rep	five_prime_UTR	1358175	1358300	.	+	.	Parent=Os01t0124550-00
Chr01	irgsp1_rep	five_prime_UTR	1358404	1358639	.	+	.	Parent=Os01t0124550-00
Chr01	irgsp1_rep	five_prime_UTR	1358882	1359082	.	+	.	Parent=Os01t0124550-00
Chr01	irgsp1_rep	five_prime_UTR	1359181	1359264	.	+	.	Parent=Os01t0124550-00
Chr01	irgsp1_rep	five_prime_UTR	1359351	1359455	.	+	.	Parent=Os01t0124550-00
Chr01	irgsp1_rep	five_prime_UTR	1359704	1359835	.	+	.	Parent=Os01t0124550-00
Chr01	irgsp1_rep	five_prime_UTR	1359953	1360470	.	+	.	Parent=Os01t0124550-00
Chr01	irgsp1_rep	CDS	1360471	1361044	.	+	0	Parent=Os01t0124550-00
Chr01	irgsp1_rep	mRNA	1363710	1364282	.	-	.	ID=Os01t0124600-00;Name=Os01t0124600-00;Locus_id=Os01g0124600;Note=Similar to cDNA clone:001-125-E08%2C full insert sequence.;Transcript_evidence=ab initio prediction;ORF_evidence=B7E9D7 (UniProt);GO=Cellular Component: extracellular region (GO:0005576),Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Proteinase inhibitor I12%2C Bowman-Birk (IPR000877);TENOR=Os01t0124600-00;KEGG=Os01t0124600-00
Chr01	irgsp1_rep	CDS	1363710	1364282	.	-	0	Parent=Os01t0124600-00
Chr01	irgsp1_rep	mRNA	1365586	1366432	.	-	.	ID=Os01t0124650-02;Name=Os01t0124650-02;Locus_id=Os01g0124650;CGSNL Gene Symbol=RBBI2-3;CGSNL Gene Name=BOWMAN-BIRK INHIBITOR 2-3;Oryzabase Gene Symbol Synonym(s)=RBBI2-3;Note=Hypothetical conserved gene.;Transcript_evidence=AK064050 (DDBJ%2C Best hit),AK099279 (DDBJ%2C Best hit);ORF_evidence=Q9M3W1 (UniProt);NIAS_FLcDNA=001-125-E08,J023130E04;Oryzabase=12538;Expression=AK064050;TENOR=Os01t0124650-02;KEGG=Os01t0124650-02
Chr01	irgsp1_rep	five_prime_UTR	1366414	1366432	.	-	.	Parent=Os01t0124650-02
Chr01	irgsp1_rep	CDS	1365856	1366413	.	-	0	Parent=Os01t0124650-02
Chr01	irgsp1_rep	three_prime_UTR	1365586	1365855	.	-	.	Parent=Os01t0124650-02
Chr01	irgsp1_rep	mRNA	1365703	1366502	.	+	.	ID=Os01t0124700-01;Name=Os01t0124700-01;Locus_id=Os01g0124700;Note=Hypothetical protein.;Transcript_evidence=AK108197 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-140-C08;Expression=AK108197;TENOR=Os01t0124700-01;KEGG=Os01t0124700-01
Chr01	irgsp1_rep	five_prime_UTR	1365703	1366108	.	+	.	Parent=Os01t0124700-01
Chr01	irgsp1_rep	CDS	1366109	1366426	.	+	0	Parent=Os01t0124700-01
Chr01	irgsp1_rep	three_prime_UTR	1366427	1366502	.	+	.	Parent=Os01t0124700-01
Chr01	irgsp1_rep	mRNA	1369191	1374138	.	+	.	ID=Os01t0124900-00;Name=Os01t0124900-00;Locus_id=Os01g0124900;Note=Seven-in-absentia protein%2C sina domain containing protein.;Transcript_evidence=AK354079 (DDBJ);ORF_evidence=Q9AWV3 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Biological Process: multicellular organismal development (GO:0007275),Biological Process: protein ubiquitination (GO:0016567),Cellular Component: nucleus (GO:0005634),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Seven-in-absentia protein%2C sina (IPR004162),TRAF-like (IPR008974),Zinc finger%2C SIAH-type (IPR013010),Seven In Absentia Homolog-type (IPR013323),Seven-in-absentia protein%2C TRAF-like domain (IPR018121);TENOR=Os01t0124900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	1369191	1369272	.	+	.	Parent=Os01t0124900-00
Chr01	irgsp1_rep	five_prime_UTR	1369592	1369737	.	+	.	Parent=Os01t0124900-00
Chr01	irgsp1_rep	CDS	1369738	1369752	.	+	0	Parent=Os01t0124900-00
Chr01	irgsp1_rep	CDS	1373557	1374138	.	+	0	Parent=Os01t0124900-00
Chr01	irgsp1_rep	mRNA	1375169	1376327	.	+	.	ID=Os01t0125000-00;Name=Os01t0125000-00;Locus_id=Os01g0125000;Note=Seven-in-absentia protein%2C sina domain containing protein.;Transcript_evidence=AK354079 (DDBJ);ORF_evidence=Q9AWV2 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Biological Process: multicellular organismal development (GO:0007275),Biological Process: protein ubiquitination (GO:0016567),Cellular Component: intracellular (GO:0005622),Cellular Component: nucleus (GO:0005634),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Seven-in-absentia protein%2C sina (IPR004162),TRAF-like (IPR008974),Zinc finger%2C SIAH-type (IPR013010),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Seven In Absentia Homolog-type (IPR013323),Zinc finger%2C C2H2-like (IPR015880),Seven-in-absentia protein%2C TRAF-like domain (IPR018121);TENOR=Os01t0125000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	1375169	1375324	.	+	0	Parent=Os01t0125000-00
Chr01	irgsp1_rep	CDS	1375464	1376327	.	+	0	Parent=Os01t0125000-00
Chr01	irgsp1_rep	mRNA	1395980	1396825	.	-	.	ID=Os01t0125500-00;Name=Os01t0125500-00;Locus_id=Os01g0125500;Note=Seven-in-absentia protein%2C sina domain containing protein.;Transcript_evidence=tplb0003d14 (Wheat FLcDNA);ORF_evidence=Q5ZCA2 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Biological Process: multicellular organismal development (GO:0007275),Biological Process: protein ubiquitination (GO:0016567),Cellular Component: nucleus (GO:0005634),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Seven-in-absentia protein%2C sina (IPR004162),TRAF-like (IPR008974),Zinc finger%2C SIAH-type (IPR013010),Seven In Absentia Homolog-type (IPR013323),Seven-in-absentia protein%2C TRAF-like domain (IPR018121);TENOR=Os01t0125500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	1395980	1396825	.	-	0	Parent=Os01t0125500-00
Chr01	irgsp1_rep	mRNA	1401419	1403419	.	-	.	ID=Os01t0125550-01;Name=Os01t0125550-01;Locus_id=Os01g0125550;Note=Conserved hypothetical protein.;Transcript_evidence=AK241859 (DDBJ%2C Best hit);ORF_evidence=NP_001172155.1 (RefSeq);NIAS_FLcDNA=J065216F03;TENOR=Os01t0125550-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	1403388	1403419	.	-	.	Parent=Os01t0125550-01
Chr01	irgsp1_rep	CDS	1403082	1403387	.	-	0	Parent=Os01t0125550-01
Chr01	irgsp1_rep	CDS	1402374	1402460	.	-	0	Parent=Os01t0125550-01
Chr01	irgsp1_rep	three_prime_UTR	1401419	1402373	.	-	.	Parent=Os01t0125550-01
Chr01	irgsp1_rep	mRNA	1404816	1406889	.	+	.	ID=Os01t0125600-01;Name=Os01t0125600-01;Locus_id=Os01g0125600;CGSNL Gene Symbol=HMP1;CGSNL Gene Name=HEAVY METAL-ASSOCIATED PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsHMP1%2C OsHMP01;Oryzabase Gene Name Synonym(s)=Heavy metal-associated protein 1;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK103550 (DDBJ%2C Best hit),AK105015 (DDBJ%2C Best hit);ORF_evidence=A6N0H2 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);NIAS_FLcDNA=J033132F09,001-008-D10;Oryzabase=23527;Expression=AK103550;TENOR=Os01t0125600-01;KEGG=Os01t0125600-01
Chr01	irgsp1_rep	five_prime_UTR	1404816	1404960	.	+	.	Parent=Os01t0125600-01
Chr01	irgsp1_rep	CDS	1404961	1404999	.	+	0	Parent=Os01t0125600-01
Chr01	irgsp1_rep	CDS	1405103	1405178	.	+	0	Parent=Os01t0125600-01
Chr01	irgsp1_rep	CDS	1405680	1406827	.	+	2	Parent=Os01t0125600-01
Chr01	irgsp1_rep	three_prime_UTR	1406828	1406889	.	+	.	Parent=Os01t0125600-01
Chr01	irgsp1_rep	mRNA	1410987	1413093	.	-	.	ID=Os01t0125700-01;Name=Os01t0125700-01;Locus_id=Os01g0125700;Note=Conserved hypothetical protein.;Transcript_evidence=AK121965 (DDBJ%2C Best hit);ORF_evidence=Q9AWU7 (UniProt);NIAS_FLcDNA=J033108C20;Expression=AK121965;TENOR=Os01t0125700-01;KEGG=Os01t0125700-01
Chr01	irgsp1_rep	five_prime_UTR	1412934	1413093	.	-	.	Parent=Os01t0125700-01
Chr01	irgsp1_rep	CDS	1412774	1412933	.	-	0	Parent=Os01t0125700-01
Chr01	irgsp1_rep	CDS	1411137	1411924	.	-	2	Parent=Os01t0125700-01
Chr01	irgsp1_rep	three_prime_UTR	1410987	1411136	.	-	.	Parent=Os01t0125700-01
Chr01	irgsp1_rep	mRNA	1413839	1418982	.	+	.	ID=Os01t0125800-01;Name=Os01t0125800-01;Locus_id=Os01g0125800;RAP-DB Gene Symbol Synonym(s)=AIP1%2C OsAIP1%2COsWD40-1;RAP-DB Gene Name Synonym(s)=Actin-interacting protein 1;Oryzabase Gene Symbol Synonym(s)=OsWD40-1%2C WD40-1%2C OsWD40%2C WD40;Oryzabase Gene Name Synonym(s)=WD-40 repeat domain-containing protein;Note=Actin-interacting%2C WD40-repeat protein%2C Actin turnover;Transcript_evidence=AK121927;ORF_evidence=Q9AWU6;GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat (IPR001680),WD40 repeat%2C conserved site (IPR019775);NIAS_FLcDNA=J033106G21;Manual Curation=May 14%2C 2014;Literature_PMID=23134061;Oryzabase=10682;TENOR=Os01t0125800-01;KEGG=Os01t0125800-01
Chr01	irgsp1_rep	five_prime_UTR	1413839	1413917	.	+	.	Parent=Os01t0125800-01
Chr01	irgsp1_rep	CDS	1413918	1414309	.	+	0	Parent=Os01t0125800-01
Chr01	irgsp1_rep	CDS	1414845	1415006	.	+	1	Parent=Os01t0125800-01
Chr01	irgsp1_rep	CDS	1415534	1415720	.	+	1	Parent=Os01t0125800-01
Chr01	irgsp1_rep	CDS	1416221	1416646	.	+	0	Parent=Os01t0125800-01
Chr01	irgsp1_rep	CDS	1417361	1417768	.	+	0	Parent=Os01t0125800-01
Chr01	irgsp1_rep	CDS	1418397	1418654	.	+	0	Parent=Os01t0125800-01
Chr01	irgsp1_rep	three_prime_UTR	1418655	1418982	.	+	.	Parent=Os01t0125800-01
Chr01	irgsp1_rep	mRNA	1413847	1418662	.	-	.	ID=Os01t0125850-00;Name=Os01t0125850-00;Locus_id=Os01g0125850;Note=Hypothetical protein.;Transcript_evidence=tplb0041e10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0125850-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	1418412	1418662	.	-	.	Parent=Os01t0125850-00
Chr01	irgsp1_rep	five_prime_UTR	1417337	1417783	.	-	.	Parent=Os01t0125850-00
Chr01	irgsp1_rep	five_prime_UTR	1416221	1416619	.	-	.	Parent=Os01t0125850-00
Chr01	irgsp1_rep	five_prime_UTR	1415532	1415720	.	-	.	Parent=Os01t0125850-00
Chr01	irgsp1_rep	five_prime_UTR	1414935	1415004	.	-	.	Parent=Os01t0125850-00
Chr01	irgsp1_rep	CDS	1414843	1414934	.	-	0	Parent=Os01t0125850-00
Chr01	irgsp1_rep	CDS	1414175	1414307	.	-	1	Parent=Os01t0125850-00
Chr01	irgsp1_rep	three_prime_UTR	1413847	1414174	.	-	.	Parent=Os01t0125850-00
Chr01	irgsp1_rep	mRNA	1421693	1427650	.	+	.	ID=Os01t0125900-01;Name=Os01t0125900-01;Locus_id=Os01g0125900;CGSNL Gene Symbol=UBC34;CGSNL Gene Name=UBIQUITIN-CONJUGATING ENZYME 34;Oryzabase Gene Symbol Synonym(s)=OsUBC34;Oryzabase Gene Name Synonym(s)=Ubiquitin-conjugating enzyme 34;Note=Ubiquitin-conjugating enzyme/RWD-like domain containing protein.;Transcript_evidence=AK103631 (DDBJ%2C Best hit);ORF_evidence=Q9AWU5 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135);NIAS_FLcDNA=J033133P14;Oryzabase=19569;Expression=AK103631;TENOR=Os01t0125900-01;KEGG=Os01t0125900-01 (EC:6.3.2.19)
Chr01	irgsp1_rep	five_prime_UTR	1421693	1421897	.	+	.	Parent=Os01t0125900-01
Chr01	irgsp1_rep	five_prime_UTR	1423289	1423343	.	+	.	Parent=Os01t0125900-01
Chr01	irgsp1_rep	CDS	1423344	1425260	.	+	0	Parent=Os01t0125900-01
Chr01	irgsp1_rep	CDS	1425338	1425472	.	+	0	Parent=Os01t0125900-01
Chr01	irgsp1_rep	CDS	1425568	1425712	.	+	0	Parent=Os01t0125900-01
Chr01	irgsp1_rep	CDS	1425788	1425990	.	+	2	Parent=Os01t0125900-01
Chr01	irgsp1_rep	CDS	1426183	1426252	.	+	0	Parent=Os01t0125900-01
Chr01	irgsp1_rep	CDS	1426356	1426495	.	+	2	Parent=Os01t0125900-01
Chr01	irgsp1_rep	CDS	1426620	1426931	.	+	0	Parent=Os01t0125900-01
Chr01	irgsp1_rep	CDS	1427272	1427541	.	+	0	Parent=Os01t0125900-01
Chr01	irgsp1_rep	three_prime_UTR	1427542	1427650	.	+	.	Parent=Os01t0125900-01
Chr01	irgsp1_rep	mRNA	1433755	1434955	.	-	.	ID=Os01t0126000-01;Name=Os01t0126000-01;Locus_id=Os01g0126000;Note=Hypothetical gene.;Transcript_evidence=AK109441 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=006-311-D08;Expression=AK109441;TENOR=Os01t0126000-01;KEGG=Os01t0126000-01
Chr01	irgsp1_rep	five_prime_UTR	1434954	1434955	.	-	.	Parent=Os01t0126000-01
Chr01	irgsp1_rep	CDS	1434540	1434953	.	-	0	Parent=Os01t0126000-01
Chr01	irgsp1_rep	three_prime_UTR	1434418	1434539	.	-	.	Parent=Os01t0126000-01
Chr01	irgsp1_rep	three_prime_UTR	1433755	1434347	.	-	.	Parent=Os01t0126000-01
Chr01	irgsp1_rep	mRNA	1433996	1436809	.	+	.	ID=Os01t0126100-01;Name=Os01t0126100-01;Locus_id=Os01g0126100;RAP-DB Gene Symbol Synonym(s)=OsLPR1;RAP-DB Gene Name Synonym(s)=Low Phosphate Root1;CGSNL Gene Symbol=LPR1;CGSNL Gene Name=LOW PHOSPHATE ROOT 1;Oryzabase Gene Symbol Synonym(s)=OsLPR1;Oryzabase Gene Name Synonym(s)=Low Phosphate Root1%2C Low Phosphate Root 1;Note=Multicopper oxidase;Transcript_evidence=AK106990;ORF_evidence=Q9AWU4;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: copper ion binding (GO:0005507),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Cupredoxin (IPR008972),Multicopper oxidase%2C type 3 (IPR011707),Multicopper oxidase%2C type 1 (IPR001117),Multicopper oxidase%2C type 2 (IPR011706),Multicopper oxidase%2C copper-binding site (IPR002355);NIAS_FLcDNA=002-120-A08;Manual Curation=October 6%2C 2016;Literature_PMID=27716044;Oryzabase=21443;Expression=AK106990;TENOR=Os01t0126100-01;KEGG=Os01t0126100-01
Chr01	irgsp1_rep	five_prime_UTR	1433996	1434083	.	+	.	Parent=Os01t0126100-01
Chr01	irgsp1_rep	CDS	1434084	1434320	.	+	0	Parent=Os01t0126100-01
Chr01	irgsp1_rep	CDS	1434432	1435889	.	+	0	Parent=Os01t0126100-01
Chr01	irgsp1_rep	CDS	1436443	1436496	.	+	0	Parent=Os01t0126100-01
Chr01	irgsp1_rep	three_prime_UTR	1436497	1436809	.	+	.	Parent=Os01t0126100-01
Chr01	irgsp1_rep	mRNA	1437163	1445599	.	+	.	ID=Os01t0126200-01;Name=Os01t0126200-01;Locus_id=Os01g0126200;RAP-DB Gene Symbol Synonym(s)=OsLPR2;RAP-DB Gene Name Synonym(s)=Low Phosphate Root2;CGSNL Gene Symbol=LPR2;CGSNL Gene Name=LOW PHOSPHATE ROOT 2;Oryzabase Gene Symbol Synonym(s)=OsLPR2;Oryzabase Gene Name Synonym(s)=Low Phosphate Root2%2C Low Phosphate Root 2;Note=Multicopper oxidase;Transcript_evidence=AK121464;ORF_evidence=Q5ZE07;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: copper ion binding (GO:0005507),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Cupredoxin (IPR008972),Multicopper oxidase%2C type 2 (IPR011706);NIAS_FLcDNA=J023145F10;Manual Curation=October 7%2C 2016;Literature_PMID=27716044;Oryzabase=21444;TENOR=Os01t0126200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	1437163	1437345	.	+	.	Parent=Os01t0126200-01
Chr01	irgsp1_rep	CDS	1437346	1437582	.	+	0	Parent=Os01t0126200-01
Chr01	irgsp1_rep	CDS	1443705	1445210	.	+	0	Parent=Os01t0126200-01
Chr01	irgsp1_rep	CDS	1445312	1445365	.	+	0	Parent=Os01t0126200-01
Chr01	irgsp1_rep	three_prime_UTR	1445366	1445599	.	+	.	Parent=Os01t0126200-01
Chr01	irgsp1_rep	mRNA	1445541	1449450	.	-	.	ID=Os01t0126401-01;Name=Os01t0126401-01;Locus_id=Os01g0126401;Note=Hypothetical gene.;Transcript_evidence=AK288786 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090069L01;TENOR=Os01t0126401-01;KEGG=Os01t0126401-01
Chr01	irgsp1_rep	five_prime_UTR	1446320	1449450	.	-	.	Parent=Os01t0126401-01
Chr01	irgsp1_rep	CDS	1445822	1446319	.	-	0	Parent=Os01t0126401-01
Chr01	irgsp1_rep	three_prime_UTR	1445541	1445821	.	-	.	Parent=Os01t0126401-01
Chr01	irgsp1_rep	mRNA	1446849	1450473	.	+	.	ID=Os01t0126600-01;Name=Os01t0126600-01;Locus_id=Os01g0126600;RAP-DB Gene Symbol Synonym(s)=OsFDML2;RAP-DB Gene Name Synonym(s)=FACTOR OF DNA METHYLATION LIKE 2;Oryzabase Gene Symbol Synonym(s)=OsFDML2%2C FDML2;Oryzabase Gene Name Synonym(s)=FACTOR OF DNA METHYLATION LIKE 2;Note=Paralog of FACTOR OF DNA METHYLATION LIKE 1 (OsFDML1)%2C Regulation of flower development;Transcript_evidence=AK065750 (truncated),Inferred from literature;ORF_evidence=Q7F761;GO=Biological Process: gene silencing by RNA (GO:0031047);InterPro=XS domain superfamily (IPR038588),XS domain (IPR005380),Uncharacterised domain XH (IPR005379);NIAS_FLcDNA=J013039A03 (truncated);Manual Curation=June 15%2C 2018;Literature_PMID=29717020;Oryzabase=22414;Expression=AK065750;TENOR=Os01t0126600-01;KEGG=Os01t0126600-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	1446849	1447047	.	+	.	Parent=Os01t0126600-01
Chr01	irgsp1_rep	five_prime_UTR	1447211	1447220	.	+	.	Parent=Os01t0126600-01
Chr01	irgsp1_rep	CDS	1447221	1447902	.	+	0	Parent=Os01t0126600-01
Chr01	irgsp1_rep	CDS	1448040	1448221	.	+	2	Parent=Os01t0126600-01
Chr01	irgsp1_rep	CDS	1448530	1448619	.	+	0	Parent=Os01t0126600-01
Chr01	irgsp1_rep	CDS	1448694	1448981	.	+	0	Parent=Os01t0126600-01
Chr01	irgsp1_rep	CDS	1449121	1449333	.	+	0	Parent=Os01t0126600-01
Chr01	irgsp1_rep	CDS	1449860	1450087	.	+	0	Parent=Os01t0126600-01
Chr01	irgsp1_rep	three_prime_UTR	1450088	1450473	.	+	.	Parent=Os01t0126600-01
Chr01	irgsp1_rep	mRNA	1486400	1488897	.	+	.	ID=Os01t0126900-01;Name=Os01t0126900-01;Locus_id=Os01g0126900;RAP-DB Gene Symbol Synonym(s)=OsLPR4;RAP-DB Gene Name Synonym(s)=Low Phosphate Root4;CGSNL Gene Symbol=LPR4;CGSNL Gene Name=LOW PHOSPHATE ROOT 4;Oryzabase Gene Symbol Synonym(s)=OsLPR4;Oryzabase Gene Name Synonym(s)=Low Phosphate Root4%2C Low Phosphate Root 4;Note=Multicopper oxidase;Transcript_evidence=AK109876;ORF_evidence=Q5ZE01;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: copper ion binding (GO:0005507),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Cupredoxin (IPR008972),Multicopper oxidase%2C type 3 (IPR011707),Multicopper oxidase%2C type 1 (IPR001117),Multicopper oxidase%2C type 2 (IPR011706);NIAS_FLcDNA=002-149-C02;Manual Curation=October 7%2C 2016;Literature_PMID=27716044;Oryzabase=21446;Expression=AK109876;TENOR=Os01t0126900-01;KEGG=Os01t0126900-01
Chr01	irgsp1_rep	five_prime_UTR	1486400	1486511	.	+	.	Parent=Os01t0126900-01
Chr01	irgsp1_rep	CDS	1486622	1486870	.	+	0	Parent=Os01t0126900-01
Chr01	irgsp1_rep	CDS	1487350	1488888	.	+	0	Parent=Os01t0126900-01
Chr01	irgsp1_rep	three_prime_UTR	1488889	1488897	.	+	.	Parent=Os01t0126900-01
Chr01	irgsp1_rep	mRNA	1490494	1492684	.	-	.	ID=Os01t0127000-01;Name=Os01t0127000-01;Locus_id=Os01g0127000;RAP-DB Gene Symbol Synonym(s)=OsLPR3;RAP-DB Gene Name Synonym(s)=Low Phosphate Root3;CGSNL Gene Symbol=LPR3;CGSNL Gene Name=LOW PHOSPHATE ROOT 3;Oryzabase Gene Symbol Synonym(s)=OsLPR3;Oryzabase Gene Name Synonym(s)=Low Phosphate Root3%2C Low Phosphate Root 3;Note=Multicopper oxidase%2C Maintenance of Pi homeostasis;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: copper ion binding (GO:0005507),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Cupredoxin (IPR008972),Multicopper oxidase%2C type 3 (IPR011707),Multicopper oxidase%2C type 1 (IPR001117),Multicopper oxidase%2C type 2 (IPR011706),Multicopper oxidase%2C copper-binding site (IPR002355);Manual Curation=October 6%2C 2016;Literature_PMID=27716044;Oryzabase=21445;TENOR=Os01t0127000-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	1492575	1492684	.	-	.	Parent=Os01t0127000-01
Chr01	irgsp1_rep	CDS	1491024	1492574	.	-	0	Parent=Os01t0127000-01
Chr01	irgsp1_rep	CDS	1490798	1490851	.	-	0	Parent=Os01t0127000-01
Chr01	irgsp1_rep	three_prime_UTR	1490494	1490797	.	-	.	Parent=Os01t0127000-01
Chr01	irgsp1_rep	mRNA	1490993	1492680	.	+	.	ID=Os01t0127100-01;Name=Os01t0127100-01;Locus_id=Os01g0127100;Note=Hypothetical protein.;Transcript_evidence=AK106749 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-115-C07;Expression=AK106749;TENOR=Os01t0127100-01;KEGG=Os01t0127100-01
Chr01	irgsp1_rep	five_prime_UTR	1490993	1491075	.	+	.	Parent=Os01t0127100-01
Chr01	irgsp1_rep	CDS	1491076	1491417	.	+	0	Parent=Os01t0127100-01
Chr01	irgsp1_rep	three_prime_UTR	1491418	1492680	.	+	.	Parent=Os01t0127100-01
Chr01	irgsp1_rep	mRNA	1497241	1500606	.	-	.	ID=Os01t0127200-01;Name=Os01t0127200-01;Locus_id=Os01g0127200;RAP-DB Gene Symbol Synonym(s)=OsLPR5%2C OsSTA2;RAP-DB Gene Name Synonym(s)=Low Phosphate Root5;Oryzabase Gene Symbol Synonym(s)=OsSTA2%2C STA2%2C OsLPR5%2C LPR5;Oryzabase Gene Name Synonym(s)=Low Phosphate Root5%2C Low Phosphate Root 5;Note=Multicopper oxidase%2C Maintenance of Pi homeostasis;Transcript_evidence=AK243237;ORF_evidence=A2ZNT5;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: copper ion binding (GO:0005507),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Cupredoxin (IPR008972),Multicopper oxidase%2C type 3 (IPR011707),Multicopper oxidase%2C type 1 (IPR001117),Multicopper oxidase%2C type 2 (IPR011706),Multicopper oxidase%2C copper-binding site (IPR002355);NIAS_FLcDNA=J100045I20;Manual Curation=October 6%2C 2016;Literature_PMID=27716044;Oryzabase=19320;TENOR=Os01t0127200-01;KEGG=Os01t0127200-01
Chr01	irgsp1_rep	five_prime_UTR	1500535	1500606	.	-	.	Parent=Os01t0127200-01
Chr01	irgsp1_rep	CDS	1499928	1500341	.	-	0	Parent=Os01t0127200-01
Chr01	irgsp1_rep	CDS	1497686	1499131	.	-	0	Parent=Os01t0127200-01
Chr01	irgsp1_rep	CDS	1497543	1497596	.	-	0	Parent=Os01t0127200-01
Chr01	irgsp1_rep	three_prime_UTR	1497241	1497542	.	-	.	Parent=Os01t0127200-01
Chr01	irgsp1_rep	mRNA	1504037	1508057	.	-	.	ID=Os01t0127300-01;Name=Os01t0127300-01;Locus_id=Os01g0127300;CGSNL Gene Symbol=ABCI4;CGSNL Gene Name=ABC TRANSPORTER I FAMILY MEMBER 4;Oryzabase Gene Symbol Synonym(s)=OsABCI4%2C OsISC18;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCI subgroup member 4%2C Iron-sulfur cluster protein 18;Note=SufBD family protein.;Transcript_evidence=AK068846 (DDBJ%2C Best hit);ORF_evidence=A2ZNT6 (UniProt);GO=Biological Process: iron-sulfur cluster assembly (GO:0016226);InterPro=SUF system FeS cluster assembly%2C SufBD (IPR000825);NIAS_FLcDNA=J013162I04;Oryzabase=12028;Expression=AK068846;TENOR=Os01t0127300-01;KEGG=Os01t0127300-01
Chr01	irgsp1_rep	five_prime_UTR	1508029	1508057	.	-	.	Parent=Os01t0127300-01
Chr01	irgsp1_rep	CDS	1507162	1508028	.	-	0	Parent=Os01t0127300-01
Chr01	irgsp1_rep	CDS	1505398	1505657	.	-	0	Parent=Os01t0127300-01
Chr01	irgsp1_rep	CDS	1504254	1504575	.	-	1	Parent=Os01t0127300-01
Chr01	irgsp1_rep	three_prime_UTR	1504037	1504253	.	-	.	Parent=Os01t0127300-01
Chr01	irgsp1_rep	mRNA	1508213	1510771	.	+	.	ID=Os01t0127400-00;Name=Os01t0127400-00;Locus_id=Os01g0127400;Note=Protein of unknown function DUF3326 domain containing protein.;Transcript_evidence=AK356306 (DDBJ);ORF_evidence=NP_001041903.2 (RefSeq);InterPro=Protein of unknown function DUF3326 (IPR021763);TENOR=Os01t0127400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	1508213	1508229	.	+	.	Parent=Os01t0127400-00
Chr01	irgsp1_rep	CDS	1508230	1508481	.	+	0	Parent=Os01t0127400-00
Chr01	irgsp1_rep	CDS	1508562	1508678	.	+	0	Parent=Os01t0127400-00
Chr01	irgsp1_rep	CDS	1508803	1508931	.	+	0	Parent=Os01t0127400-00
Chr01	irgsp1_rep	CDS	1509076	1509252	.	+	0	Parent=Os01t0127400-00
Chr01	irgsp1_rep	CDS	1509630	1509770	.	+	0	Parent=Os01t0127400-00
Chr01	irgsp1_rep	CDS	1510045	1510233	.	+	0	Parent=Os01t0127400-00
Chr01	irgsp1_rep	CDS	1510311	1510382	.	+	0	Parent=Os01t0127400-00
Chr01	irgsp1_rep	CDS	1510483	1510680	.	+	0	Parent=Os01t0127400-00
Chr01	irgsp1_rep	three_prime_UTR	1510681	1510771	.	+	.	Parent=Os01t0127400-00
Chr01	irgsp1_rep	mRNA	1511964	1512646	.	+	.	ID=Os01t0127450-00;Name=Os01t0127450-00;Locus_id=Os01g0127450;Note=Similar to MYBL2 (ARABIDOPSIS MYB-LIKE 2)%3B DNA binding / transcription factor.;Transcript_evidence=AJ601381 (DDBJ);ORF_evidence=NP_177259.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);TENOR=Os01t0127450-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	1511964	1512151	.	+	0	Parent=Os01t0127450-00
Chr01	irgsp1_rep	CDS	1512262	1512646	.	+	1	Parent=Os01t0127450-00
Chr01	irgsp1_rep	mRNA	1513138	1514432	.	+	.	ID=Os01t0127500-01;Name=Os01t0127500-01;Locus_id=Os01g0127500;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK106870 (DDBJ%2C Best hit);ORF_evidence=C5MRG2 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=002-118-D07;Expression=AK106870;TENOR=Os01t0127500-01;KEGG=Os01t0127500-01
Chr01	irgsp1_rep	five_prime_UTR	1513138	1513180	.	+	.	Parent=Os01t0127500-01
Chr01	irgsp1_rep	CDS	1513181	1513286	.	+	0	Parent=Os01t0127500-01
Chr01	irgsp1_rep	CDS	1513373	1514280	.	+	2	Parent=Os01t0127500-01
Chr01	irgsp1_rep	three_prime_UTR	1514281	1514432	.	+	.	Parent=Os01t0127500-01
Chr01	irgsp1_rep	mRNA	1515837	1516714	.	+	.	ID=Os01t0127600-01;Name=Os01t0127600-01;Locus_id=Os01g0127600;Note=Similar to Bowman-Birk type proteinase inhibitor D-II precursor (IV).;Transcript_evidence=AK102138 (DDBJ%2C Best hit),AK105455 (DDBJ%2C Best hit);ORF_evidence=A2WK77 (UniProt);GO=Cellular Component: extracellular region (GO:0005576),Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Proteinase inhibitor I12%2C Bowman-Birk (IPR000877);NIAS_FLcDNA=J033085I16,001-125-D07;TENOR=Os01t0127600-01
Chr01	irgsp1_rep	five_prime_UTR	1515837	1515877	.	+	.	Parent=Os01t0127600-01
Chr01	irgsp1_rep	CDS	1515878	1516417	.	+	0	Parent=Os01t0127600-01
Chr01	irgsp1_rep	three_prime_UTR	1516418	1516714	.	+	.	Parent=Os01t0127600-01
Chr01	irgsp1_rep	mRNA	1518247	1521601	.	+	.	ID=Os01t0127700-01;Name=Os01t0127700-01;Locus_id=Os01g0127700;CGSNL Gene Symbol=RLCK19;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 19;Oryzabase Gene Symbol Synonym(s)=OsRLCK19;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 19;Note=Conserved hypothetical protein.;Transcript_evidence=AK072972 (DDBJ%2C Best hit);ORF_evidence=B9EZB1 (UniProt);NIAS_FLcDNA=J023147E12;Oryzabase=18739;TENOR=Os01t0127700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	1518247	1518378	.	+	.	Parent=Os01t0127700-01
Chr01	irgsp1_rep	CDS	1518379	1518834	.	+	0	Parent=Os01t0127700-01
Chr01	irgsp1_rep	three_prime_UTR	1518835	1520946	.	+	.	Parent=Os01t0127700-01
Chr01	irgsp1_rep	three_prime_UTR	1521049	1521601	.	+	.	Parent=Os01t0127700-01
Chr01	irgsp1_rep	mRNA	1534135	1539601	.	+	.	ID=Os01t0127900-01;Name=Os01t0127900-01;Locus_id=Os01g0127900;Note=Mannose-6-phosphate isomerase domain containing protein.;Transcript_evidence=AK070177 (DDBJ%2C Best hit);ORF_evidence=B4FP68 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: mannose-6-phosphate isomerase activity (GO:0004476),Molecular Function: zinc ion binding (GO:0008270);InterPro=Mannose-6-phosphate isomerase%2C type I (IPR001250),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),Mannose-6-phosphate isomerase (IPR016305),Phosphomannose isomerase%2C type I%2C conserved site (IPR018050);NIAS_FLcDNA=J023043B18;Expression=AK070177;TENOR=Os01t0127900-01;KEGG=Os01t0127900-01 (EC:5.3.1.8)
Chr01	irgsp1_rep	five_prime_UTR	1534135	1534218	.	+	.	Parent=Os01t0127900-01
Chr01	irgsp1_rep	CDS	1534219	1534536	.	+	0	Parent=Os01t0127900-01
Chr01	irgsp1_rep	CDS	1534658	1534825	.	+	0	Parent=Os01t0127900-01
Chr01	irgsp1_rep	CDS	1537228	1537440	.	+	0	Parent=Os01t0127900-01
Chr01	irgsp1_rep	CDS	1538434	1538700	.	+	0	Parent=Os01t0127900-01
Chr01	irgsp1_rep	CDS	1538947	1539267	.	+	0	Parent=Os01t0127900-01
Chr01	irgsp1_rep	three_prime_UTR	1539268	1539601	.	+	.	Parent=Os01t0127900-01
Chr01	irgsp1_rep	mRNA	1549241	1551011	.	-	.	ID=Os01t0128000-01;Name=Os01t0128000-01;Locus_id=Os01g0128000;Note=Myb transcription factor domain containing protein.;Transcript_evidence=AK107424 (DDBJ%2C Best hit);ORF_evidence=B4FU27 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=002-127-F10;Expression=AK107424;TENOR=Os01t0128000-01;KEGG=Os01t0128000-01
Chr01	irgsp1_rep	five_prime_UTR	1550885	1551011	.	-	.	Parent=Os01t0128000-01
Chr01	irgsp1_rep	CDS	1550704	1550884	.	-	0	Parent=Os01t0128000-01
Chr01	irgsp1_rep	CDS	1550475	1550604	.	-	2	Parent=Os01t0128000-01
Chr01	irgsp1_rep	CDS	1549638	1550379	.	-	1	Parent=Os01t0128000-01
Chr01	irgsp1_rep	three_prime_UTR	1549241	1549637	.	-	.	Parent=Os01t0128000-01
Chr01	irgsp1_rep	mRNA	1562618	1566554	.	-	.	ID=Os01t0128100-01;Name=Os01t0128100-01;Locus_id=Os01g0128100;Note=Similar to Bifunctional nuclease (Fragment).;Transcript_evidence=AK071917 (DDBJ%2C Best hit);ORF_evidence=NP_001148531.1 (RefSeq);GO=Biological Process: DNA catabolic process (GO:0006308),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: endonuclease activity (GO:0004519),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=S1/P1 nuclease (IPR003154),Phospholipase C/P1 nuclease%2C core (IPR008947);NIAS_FLcDNA=J013071I09;Expression=AK071917;TENOR=Os01t0128100-01;KEGG=Os01t0128100-01
Chr01	irgsp1_rep	five_prime_UTR	1564423	1566554	.	-	.	Parent=Os01t0128100-01
Chr01	irgsp1_rep	CDS	1564299	1564422	.	-	0	Parent=Os01t0128100-01
Chr01	irgsp1_rep	CDS	1564051	1564224	.	-	2	Parent=Os01t0128100-01
Chr01	irgsp1_rep	CDS	1563843	1563950	.	-	2	Parent=Os01t0128100-01
Chr01	irgsp1_rep	CDS	1563697	1563752	.	-	2	Parent=Os01t0128100-01
Chr01	irgsp1_rep	CDS	1563521	1563604	.	-	0	Parent=Os01t0128100-01
Chr01	irgsp1_rep	CDS	1563279	1563371	.	-	0	Parent=Os01t0128100-01
Chr01	irgsp1_rep	CDS	1563140	1563207	.	-	0	Parent=Os01t0128100-01
Chr01	irgsp1_rep	CDS	1562977	1563050	.	-	1	Parent=Os01t0128100-01
Chr01	irgsp1_rep	CDS	1562779	1562873	.	-	2	Parent=Os01t0128100-01
Chr01	irgsp1_rep	three_prime_UTR	1562618	1562778	.	-	.	Parent=Os01t0128100-01
Chr01	irgsp1_rep	mRNA	1566147	1569467	.	+	.	ID=Os01t0128200-01;Name=Os01t0128200-01;Locus_id=Os01g0128200;Oryzabase Gene Name Synonym(s)=bifunctional nuclease;Note=Similar to Nuclease I.;Transcript_evidence=AK059608 (DDBJ%2C Best hit);ORF_evidence=B6U2F0 (UniProt);GO=Biological Process: DNA catabolic process (GO:0006308),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: endonuclease activity (GO:0004519),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=S1/P1 nuclease (IPR003154),Phospholipase C/P1 nuclease%2C core (IPR008947);NIAS_FLcDNA=001-030-F03;Oryzabase=16029;Expression=AK059608;TENOR=Os01t0128200-01;KEGG=Os01t0128200-01
Chr01	irgsp1_rep	five_prime_UTR	1566147	1566165	.	+	.	Parent=Os01t0128200-01
Chr01	irgsp1_rep	CDS	1566166	1566306	.	+	0	Parent=Os01t0128200-01
Chr01	irgsp1_rep	CDS	1566408	1566579	.	+	0	Parent=Os01t0128200-01
Chr01	irgsp1_rep	CDS	1568023	1568124	.	+	2	Parent=Os01t0128200-01
Chr01	irgsp1_rep	CDS	1568234	1568373	.	+	2	Parent=Os01t0128200-01
Chr01	irgsp1_rep	CDS	1568478	1568570	.	+	0	Parent=Os01t0128200-01
Chr01	irgsp1_rep	CDS	1568648	1568715	.	+	0	Parent=Os01t0128200-01
Chr01	irgsp1_rep	CDS	1568806	1568879	.	+	1	Parent=Os01t0128200-01
Chr01	irgsp1_rep	CDS	1568987	1569123	.	+	2	Parent=Os01t0128200-01
Chr01	irgsp1_rep	three_prime_UTR	1569124	1569467	.	+	.	Parent=Os01t0128200-01
Chr01	irgsp1_rep	mRNA	1567453	1568989	.	-	.	ID=Os01t0128250-01;Name=Os01t0128250-01;Locus_id=Os01g0128250;Note=Hypothetical gene.;Transcript_evidence=AK120005 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-186-A02;Expression=AK120005;TENOR=Os01t0128250-01;KEGG=Os01t0128250-01
Chr01	irgsp1_rep	five_prime_UTR	1568334	1568989	.	-	.	Parent=Os01t0128250-01
Chr01	irgsp1_rep	CDS	1568121	1568333	.	-	0	Parent=Os01t0128250-01
Chr01	irgsp1_rep	three_prime_UTR	1567453	1568120	.	-	.	Parent=Os01t0128250-01
Chr01	irgsp1_rep	mRNA	1569644	1570940	.	-	.	ID=Os01t0128300-01;Name=Os01t0128300-01;Locus_id=Os01g0128300;RAP-DB Gene Symbol Synonym(s)=MHZ4;RAP-DB Gene Name Synonym(s)=mao huzi 4;CGSNL Gene Symbol=MHZ4;CGSNL Gene Name=MAOHUZI 4;Oryzabase Gene Symbol Synonym(s)=OsMHZ4%2C MHZ4/OsABA4%2C OsABA4%2C ABA4;Oryzabase Gene Name Synonym(s)=maohuzi 4;Note=Chloroplast-localized membrane protein homologous to Arabidopsis ABA4%2C Regulation of root growth and coleoptile elongation%2C Regulation of ethylen response;Transcript_evidence=CT841996 (Oryza rufipogon);ORF_evidence=Q5ZEG0;InterPro=ABA DEFICIENT 4-like (IPR025461);Manual Curation=April 22%2C 2020;Literature_PMID=25330236;Oryzabase=23079;TENOR=Os01t0128300-00;KEGG=Os01t0128300-00;Subcellular location=chloroplast (GO:0009507)
Chr01	irgsp1_rep	five_prime_UTR	1570889	1570940	.	-	.	Parent=Os01t0128300-01
Chr01	irgsp1_rep	CDS	1570853	1570888	.	-	0	Parent=Os01t0128300-01
Chr01	irgsp1_rep	CDS	1570577	1570769	.	-	0	Parent=Os01t0128300-01
Chr01	irgsp1_rep	CDS	1570377	1570477	.	-	2	Parent=Os01t0128300-01
Chr01	irgsp1_rep	CDS	1570162	1570290	.	-	0	Parent=Os01t0128300-01
Chr01	irgsp1_rep	CDS	1569994	1570082	.	-	0	Parent=Os01t0128300-01
Chr01	irgsp1_rep	CDS	1569742	1569880	.	-	1	Parent=Os01t0128300-01
Chr01	irgsp1_rep	three_prime_UTR	1569644	1569741	.	-	.	Parent=Os01t0128300-01
Chr01	irgsp1_rep	mRNA	1571524	1576596	.	-	.	ID=Os01t0128400-01;Name=Os01t0128400-01;Locus_id=Os01g0128400;Note=Protein of unknown function DUF2359%2C TMEM214 domain containing protein.;Transcript_evidence=AK121214 (DDBJ%2C Best hit);ORF_evidence=B8AD25 (UniProt);InterPro=Protein of unknown function DUF2359%2C TMEM214 (IPR019308);NIAS_FLcDNA=J023089M05;Expression=AK121214;TENOR=Os01t0128400-01;KEGG=Os01t0128400-01
Chr01	irgsp1_rep	five_prime_UTR	1576533	1576596	.	-	.	Parent=Os01t0128400-01
Chr01	irgsp1_rep	CDS	1576068	1576532	.	-	0	Parent=Os01t0128400-01
Chr01	irgsp1_rep	CDS	1575576	1575713	.	-	0	Parent=Os01t0128400-01
Chr01	irgsp1_rep	CDS	1574493	1574678	.	-	0	Parent=Os01t0128400-01
Chr01	irgsp1_rep	CDS	1573612	1573749	.	-	0	Parent=Os01t0128400-01
Chr01	irgsp1_rep	CDS	1573376	1573497	.	-	0	Parent=Os01t0128400-01
Chr01	irgsp1_rep	CDS	1573136	1573268	.	-	1	Parent=Os01t0128400-01
Chr01	irgsp1_rep	CDS	1572919	1573048	.	-	0	Parent=Os01t0128400-01
Chr01	irgsp1_rep	CDS	1572737	1572816	.	-	2	Parent=Os01t0128400-01
Chr01	irgsp1_rep	CDS	1572525	1572656	.	-	0	Parent=Os01t0128400-01
Chr01	irgsp1_rep	CDS	1571942	1572178	.	-	0	Parent=Os01t0128400-01
Chr01	irgsp1_rep	three_prime_UTR	1571524	1571941	.	-	.	Parent=Os01t0128400-01
Chr01	irgsp1_rep	mRNA	1571479	1573450	.	-	.	ID=Os01t0128400-02;Name=Os01t0128400-02;Locus_id=Os01g0128400;Note=Similar to predicted protein.;Transcript_evidence=AK059332 (DDBJ%2C Best hit);ORF_evidence=B8AD25 (UniProt);InterPro=Protein of unknown function DUF2359%2C TMEM214 (IPR019308);NIAS_FLcDNA=001-026-A08;Expression=AK059332;TENOR=Os01t0128400-02;KEGG=Os01t0128400-02
Chr01	irgsp1_rep	five_prime_UTR	1573450	1573450	.	-	.	Parent=Os01t0128400-02
Chr01	irgsp1_rep	CDS	1573376	1573449	.	-	0	Parent=Os01t0128400-02
Chr01	irgsp1_rep	CDS	1573136	1573268	.	-	1	Parent=Os01t0128400-02
Chr01	irgsp1_rep	CDS	1572919	1573048	.	-	0	Parent=Os01t0128400-02
Chr01	irgsp1_rep	CDS	1572737	1572816	.	-	2	Parent=Os01t0128400-02
Chr01	irgsp1_rep	CDS	1572525	1572656	.	-	0	Parent=Os01t0128400-02
Chr01	irgsp1_rep	CDS	1571942	1572178	.	-	0	Parent=Os01t0128400-02
Chr01	irgsp1_rep	three_prime_UTR	1571479	1571941	.	-	.	Parent=Os01t0128400-02
Chr01	irgsp1_rep	mRNA	1597486	1598510	.	-	.	ID=Os01t0128700-01;Name=Os01t0128700-01;Locus_id=Os01g0128700;Note=Conserved hypothetical protein.;Transcript_evidence=AK061534 (DDBJ%2C Best hit);ORF_evidence=A2WK89 (UniProt);NIAS_FLcDNA=006-310-F05;TENOR=Os01t0128700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	1598261	1598510	.	-	.	Parent=Os01t0128700-01
Chr01	irgsp1_rep	CDS	1597928	1598260	.	-	0	Parent=Os01t0128700-01
Chr01	irgsp1_rep	three_prime_UTR	1597486	1597927	.	-	.	Parent=Os01t0128700-01
Chr01	irgsp1_rep	mRNA	1598995	1605729	.	+	.	ID=Os01t0128800-01;Name=Os01t0128800-01;Locus_id=Os01g0128800;CGSNL Gene Symbol=NTMC2T3;CGSNL Gene Name=N-TERMINAL-TM-C2 DOMAIN PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsNTMC2T3;Oryzabase Gene Name Synonym(s)=N-terminal-TM-C2 domain protein 3%2C N-terminal trans- membrane and C2 domain protein 3%2C NTMC2 type 3 protein%2C NTMC2 family gene 3;Note=Similar to plant synaptotagmin.;Transcript_evidence=AK120447 (DDBJ%2C Best hit);ORF_evidence=XP_002457438.1 (RefSeq);NIAS_FLcDNA=J013100G15;Oryzabase=22126;TENOR=Os01t0128800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	1598995	1599045	.	+	.	Parent=Os01t0128800-01
Chr01	irgsp1_rep	CDS	1599046	1599234	.	+	0	Parent=Os01t0128800-01
Chr01	irgsp1_rep	CDS	1599526	1599600	.	+	0	Parent=Os01t0128800-01
Chr01	irgsp1_rep	CDS	1599681	1599788	.	+	0	Parent=Os01t0128800-01
Chr01	irgsp1_rep	CDS	1600245	1600277	.	+	0	Parent=Os01t0128800-01
Chr01	irgsp1_rep	CDS	1600359	1600448	.	+	0	Parent=Os01t0128800-01
Chr01	irgsp1_rep	CDS	1600968	1601174	.	+	0	Parent=Os01t0128800-01
Chr01	irgsp1_rep	three_prime_UTR	1601175	1601726	.	+	.	Parent=Os01t0128800-01
Chr01	irgsp1_rep	three_prime_UTR	1601845	1602255	.	+	.	Parent=Os01t0128800-01
Chr01	irgsp1_rep	three_prime_UTR	1602360	1602491	.	+	.	Parent=Os01t0128800-01
Chr01	irgsp1_rep	three_prime_UTR	1603250	1603471	.	+	.	Parent=Os01t0128800-01
Chr01	irgsp1_rep	three_prime_UTR	1603552	1603827	.	+	.	Parent=Os01t0128800-01
Chr01	irgsp1_rep	three_prime_UTR	1604116	1604253	.	+	.	Parent=Os01t0128800-01
Chr01	irgsp1_rep	three_prime_UTR	1604772	1605077	.	+	.	Parent=Os01t0128800-01
Chr01	irgsp1_rep	three_prime_UTR	1605203	1605729	.	+	.	Parent=Os01t0128800-01
Chr01	irgsp1_rep	mRNA	1625159	1626574	.	+	.	ID=Os01t0129200-01;Name=Os01t0129200-01;Locus_id=Os01g0129200;RAP-DB Gene Symbol Synonym(s)=SL1%2C sl1(t)%2C sl1%2C stl1%2C opb%2C OPB1%2C ps%2C PS%2C OPB;RAP-DB Gene Name Synonym(s)=STAMENLESS 1%2C stamenless1%2C stamenless 1%2C stamenless-1%2C open break%2C pistilloid-stamen;CGSNL Gene Symbol=SL1;CGSNL Gene Name=STAMENLESS 1;Oryzabase Gene Symbol Synonym(s)=sl1(t)%2C sl1%2C stl1%2C opb%2C OPB1%2C ps%2C PS%2C OPB%2C DLN2%2C OsDLN2;Oryzabase Gene Name Synonym(s)=stamenless1%2C stamenless 1%2C stamenless-1%2C open break%2C pistilloid-stamen%2C DLN repressor 2%2C DLN motif protein 2;Note=C2H2 zinc-finger transcription factor%2C Floral organ identity%2C Cellular proliferation;Transcript_evidence=EU443151 (Genbank),AB297789 (Genbank);ORF_evidence=Q9LG97 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);Manual Curation=September 17%2C 2009;Literature_PMID=19453444,19207212;Oryzabase=2122;TENOR=Os01t0129200-01
Chr01	irgsp1_rep	CDS	1625159	1625279	.	+	0	Parent=Os01t0129200-01
Chr01	irgsp1_rep	CDS	1625530	1625653	.	+	2	Parent=Os01t0129200-01
Chr01	irgsp1_rep	CDS	1625899	1625982	.	+	1	Parent=Os01t0129200-01
Chr01	irgsp1_rep	CDS	1626112	1626574	.	+	1	Parent=Os01t0129200-01
Chr01	irgsp1_rep	mRNA	1641272	1644151	.	-	.	ID=Os01t0129500-02;Name=Os01t0129500-02;Locus_id=Os01g0129500;Note=Protein of unknown function DUF1666 family protein.;Transcript_evidence=AK289168 (DDBJ%2C Best hit),AK066377 (DDBJ%2C Best hit),AK099326 (DDBJ%2C Best hit);ORF_evidence=NP_177526.2 (RefSeq);NIAS_FLcDNA=J100010J02,J013065M02,J033016J24;TENOR=Os01t0129500-02;KEGG=Os01t0129500-02
Chr01	irgsp1_rep	five_prime_UTR	1644095	1644151	.	-	.	Parent=Os01t0129500-02
Chr01	irgsp1_rep	CDS	1643814	1644094	.	-	0	Parent=Os01t0129500-02
Chr01	irgsp1_rep	CDS	1643313	1643719	.	-	1	Parent=Os01t0129500-02
Chr01	irgsp1_rep	CDS	1642826	1643224	.	-	2	Parent=Os01t0129500-02
Chr01	irgsp1_rep	CDS	1642243	1642608	.	-	2	Parent=Os01t0129500-02
Chr01	irgsp1_rep	CDS	1641936	1642132	.	-	2	Parent=Os01t0129500-02
Chr01	irgsp1_rep	CDS	1641581	1641832	.	-	0	Parent=Os01t0129500-02
Chr01	irgsp1_rep	three_prime_UTR	1641272	1641580	.	-	.	Parent=Os01t0129500-02
Chr01	irgsp1_rep	mRNA	1641526	1642777	.	+	.	ID=Os01t0129550-01;Name=Os01t0129550-01;Locus_id=Os01g0129550;Note=Hypothetical gene.;Transcript_evidence=AK287433 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J043011L21;TENOR=Os01t0129550-01;KEGG=Os01t0129550-01
Chr01	irgsp1_rep	five_prime_UTR	1641526	1641914	.	+	.	Parent=Os01t0129550-01
Chr01	irgsp1_rep	CDS	1641915	1642154	.	+	0	Parent=Os01t0129550-01
Chr01	irgsp1_rep	three_prime_UTR	1642155	1642777	.	+	.	Parent=Os01t0129550-01
Chr01	irgsp1_rep	mRNA	1657306	1658388	.	+	.	ID=Os01t0129600-00;Name=Os01t0129600-00;Locus_id=Os01g0129600;Note=Similar to LBD40 (LOB DOMAIN-CONTAINING PROTEIN 40).;Transcript_evidence=BT061404 (DDBJ);ORF_evidence=NP_176881.1 (RefSeq);InterPro=Lateral organ boundaries%2C LOB (IPR004883);TENOR=Os01t0129600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	1657306	1657555	.	+	0	Parent=Os01t0129600-00
Chr01	irgsp1_rep	CDS	1657619	1658388	.	+	2	Parent=Os01t0129600-00
Chr01	irgsp1_rep	mRNA	1670475	1670997	.	-	.	ID=Os01t0129800-01;Name=Os01t0129800-01;Locus_id=Os01g0129800;Note=Conserved hypothetical protein.;Transcript_evidence=AK107910 (DDBJ%2C Best hit);ORF_evidence=B8AD29 (UniProt);NIAS_FLcDNA=002-134-G05;Expression=AK107910;TENOR=Os01t0129800-01;KEGG=Os01t0129800-01
Chr01	irgsp1_rep	five_prime_UTR	1670925	1670997	.	-	.	Parent=Os01t0129800-01
Chr01	irgsp1_rep	CDS	1670631	1670924	.	-	0	Parent=Os01t0129800-01
Chr01	irgsp1_rep	three_prime_UTR	1670475	1670630	.	-	.	Parent=Os01t0129800-01
Chr01	irgsp1_rep	mRNA	1673607	1677066	.	-	.	ID=Os01t0130000-01;Name=Os01t0130000-01;Locus_id=Os01g0130000;CGSNL Gene Symbol=MTP9;CGSNL Gene Name=METAL TOLERANCE PROTEIN 9;Oryzabase Gene Symbol Synonym(s)=OsMTP9;Oryzabase Gene Name Synonym(s)=metal tolerance protein 9;Note=Cation efflux protein family protein.;Transcript_evidence=AK061853 (DDBJ%2C Best hit);ORF_evidence=Q9LDU0 (UniProt);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: cation transmembrane transporter activity (GO:0008324);InterPro=Cation efflux protein (IPR002524);NIAS_FLcDNA=001-040-F10;Oryzabase=13412;Expression=AK061853;TENOR=Os01t0130000-01;KEGG=Os01t0130000-01
Chr01	irgsp1_rep	five_prime_UTR	1676892	1677066	.	-	.	Parent=Os01t0130000-01
Chr01	irgsp1_rep	CDS	1676735	1676891	.	-	0	Parent=Os01t0130000-01
Chr01	irgsp1_rep	CDS	1675247	1675362	.	-	2	Parent=Os01t0130000-01
Chr01	irgsp1_rep	CDS	1674854	1675099	.	-	0	Parent=Os01t0130000-01
Chr01	irgsp1_rep	CDS	1674582	1674662	.	-	0	Parent=Os01t0130000-01
Chr01	irgsp1_rep	CDS	1674255	1674485	.	-	0	Parent=Os01t0130000-01
Chr01	irgsp1_rep	CDS	1673837	1674181	.	-	0	Parent=Os01t0130000-01
Chr01	irgsp1_rep	three_prime_UTR	1673607	1673836	.	-	.	Parent=Os01t0130000-01
Chr01	irgsp1_rep	mRNA	1673503	1675043	.	-	.	ID=Os01t0130000-02;Name=Os01t0130000-02;Locus_id=Os01g0130000;CGSNL Gene Symbol=MTP9;CGSNL Gene Name=METAL TOLERANCE PROTEIN 9;Oryzabase Gene Symbol Synonym(s)=OsMTP9;Oryzabase Gene Name Synonym(s)=metal tolerance protein 9;Note=Similar to metal tolerance protein C3.;Transcript_evidence=AK060150 (DDBJ%2C Best hit);ORF_evidence=Q9LDU0 (UniProt);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: cation transmembrane transporter activity (GO:0008324);InterPro=Cation efflux protein (IPR002524);NIAS_FLcDNA=006-310-D04;Oryzabase=13412;Expression=AK060150;TENOR=Os01t0130000-02;KEGG=Os01t0130000-02
Chr01	irgsp1_rep	five_prime_UTR	1675043	1675043	.	-	.	Parent=Os01t0130000-02
Chr01	irgsp1_rep	CDS	1674854	1675042	.	-	0	Parent=Os01t0130000-02
Chr01	irgsp1_rep	CDS	1674582	1674662	.	-	0	Parent=Os01t0130000-02
Chr01	irgsp1_rep	CDS	1674255	1674485	.	-	0	Parent=Os01t0130000-02
Chr01	irgsp1_rep	CDS	1673837	1674181	.	-	0	Parent=Os01t0130000-02
Chr01	irgsp1_rep	three_prime_UTR	1673503	1673836	.	-	.	Parent=Os01t0130000-02
Chr01	irgsp1_rep	mRNA	1673866	1674692	.	+	.	ID=Os01t0130100-01;Name=Os01t0130100-01;Locus_id=Os01g0130100;Note=Hypothetical gene.;Transcript_evidence=AK069315 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023014E13;Expression=AK069315;TENOR=Os01t0130100-01;KEGG=Os01t0130100-01
Chr01	irgsp1_rep	five_prime_UTR	1673866	1673866	.	+	.	Parent=Os01t0130100-01
Chr01	irgsp1_rep	CDS	1673867	1674199	.	+	0	Parent=Os01t0130100-01
Chr01	irgsp1_rep	three_prime_UTR	1674200	1674692	.	+	.	Parent=Os01t0130100-01
Chr01	irgsp1_rep	mRNA	1685427	1685810	.	-	.	ID=Os01t0130200-00;Name=Os01t0130200-00;Locus_id=Os01g0130200;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5EN53 (UniProt);TENOR=Os01t0130200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	1685427	1685810	.	-	0	Parent=Os01t0130200-00
Chr01	irgsp1_rep	mRNA	1698203	1703090	.	+	.	ID=Os01t0130400-01;Name=Os01t0130400-01;Locus_id=Os01g0130400;Note=Similar to Alpha-xylosidase precursor (Fragment).;Transcript_evidence=AK102309 (DDBJ%2C Best hit),AK063966 (DDBJ%2C Best hit);ORF_evidence=B5U8Y9 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Glycoside hydrolase%2C family 31 (IPR000322),Glycoside hydrolase-type carbohydrate-binding (IPR011013),Aldolase-type TIM barrel (IPR013785),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J033090B18,001-124-A04;TENOR=Os01t0130400-01
Chr01	irgsp1_rep	five_prime_UTR	1698203	1698437	.	+	.	Parent=Os01t0130400-01
Chr01	irgsp1_rep	CDS	1698438	1698691	.	+	0	Parent=Os01t0130400-01
Chr01	irgsp1_rep	CDS	1699150	1699808	.	+	1	Parent=Os01t0130400-01
Chr01	irgsp1_rep	CDS	1700754	1702639	.	+	2	Parent=Os01t0130400-01
Chr01	irgsp1_rep	three_prime_UTR	1702640	1703090	.	+	.	Parent=Os01t0130400-01
Chr01	irgsp1_rep	mRNA	1700523	1702512	.	-	.	ID=Os01t0130500-01;Name=Os01t0130500-01;Locus_id=Os01g0130500;Note=Similar to Alpha-xylosidase precursor (Fragment).;Transcript_evidence=AK110956 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-174-A07;Expression=AK110956;TENOR=Os01t0130500-01;KEGG=Os01t0130500-01
Chr01	irgsp1_rep	five_prime_UTR	1701866	1702512	.	-	.	Parent=Os01t0130500-01
Chr01	irgsp1_rep	CDS	1700789	1701865	.	-	0	Parent=Os01t0130500-01
Chr01	irgsp1_rep	three_prime_UTR	1700523	1700788	.	-	.	Parent=Os01t0130500-01
Chr01	irgsp1_rep	mRNA	1712137	1712947	.	-	.	ID=Os01t0130900-01;Name=Os01t0130900-01;Locus_id=Os01g0130900;Note=Conserved hypothetical protein.;Transcript_evidence=AK105373 (DDBJ%2C Best hit);ORF_evidence=A2WKA1 (UniProt);NIAS_FLcDNA=001-120-D04;Expression=AK105373;TENOR=Os01t0130900-01;KEGG=Os01t0130900-01
Chr01	irgsp1_rep	five_prime_UTR	1712852	1712947	.	-	.	Parent=Os01t0130900-01
Chr01	irgsp1_rep	CDS	1712327	1712851	.	-	0	Parent=Os01t0130900-01
Chr01	irgsp1_rep	three_prime_UTR	1712137	1712326	.	-	.	Parent=Os01t0130900-01
Chr01	irgsp1_rep	mRNA	1733867	1738307	.	-	.	ID=Os01t0131250-01;Name=Os01t0131250-01;Locus_id=Os01g0131250;Note=Hypothetical gene.;Transcript_evidence=AK288735 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090063J22;TENOR=Os01t0131250-01;KEGG=Os01t0131250-01
Chr01	irgsp1_rep	five_prime_UTR	1735426	1738307	.	-	.	Parent=Os01t0131250-01
Chr01	irgsp1_rep	CDS	1735015	1735425	.	-	0	Parent=Os01t0131250-01
Chr01	irgsp1_rep	three_prime_UTR	1733867	1735014	.	-	.	Parent=Os01t0131250-01
Chr01	irgsp1_rep	mRNA	1738868	1739820	.	+	.	ID=Os01t0131300-01;Name=Os01t0131300-01;Locus_id=Os01g0131300;Note=Conserved hypothetical protein.;Transcript_evidence=AK101998 (DDBJ%2C Best hit);ORF_evidence=A2WKA3 (UniProt);NIAS_FLcDNA=J033079K23;Expression=AK101998;TENOR=Os01t0131300-01;KEGG=Os01t0131300-01
Chr01	irgsp1_rep	five_prime_UTR	1738868	1738964	.	+	.	Parent=Os01t0131300-01
Chr01	irgsp1_rep	CDS	1738965	1739492	.	+	0	Parent=Os01t0131300-01
Chr01	irgsp1_rep	three_prime_UTR	1739493	1739820	.	+	.	Parent=Os01t0131300-01
Chr01	irgsp1_rep	mRNA	1746447	1748328	.	-	.	ID=Os01t0131450-00;Name=Os01t0131450-00;Locus_id=Os01g0131450;Note=Hypothetical protein.;Transcript_evidence=BT016869 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0131450-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	1746906	1748328	.	-	.	Parent=Os01t0131450-00
Chr01	irgsp1_rep	CDS	1746864	1746905	.	-	0	Parent=Os01t0131450-00
Chr01	irgsp1_rep	CDS	1746447	1746687	.	-	0	Parent=Os01t0131450-00
Chr01	irgsp1_rep	mRNA	1746416	1746977	.	+	.	ID=Os01t0131600-01;Name=Os01t0131600-01;Locus_id=Os01g0131600;CGSNL Gene Symbol=ERF108;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 108;Oryzabase Gene Symbol Synonym(s)=OsAP2%2C OsERF#108%2C OsERF108%2C AP2/EREBP#001%2C AP2/EREBP1%2C RD2;Oryzabase Gene Name Synonym(s)=APETALA2%2C ethylene response factor 108%2C APETALA2/ethylene-responsive element binding protein 1%2C Rice Drought-responsive gene 2;Note=Hypothetical conserved gene.;Transcript_evidence=AK063183 (DDBJ%2C Best hit),AK101133 (DDBJ%2C Best hit),AK102277 (DDBJ%2C Best hit),AK119645 (DDBJ%2C Best hit);ORF_evidence=B9EZC3 (UniProt);NIAS_FLcDNA=001-112-B01,J033026F23,J033089D21,002-130-G05;Oryzabase=10229;Expression=AK063183;TENOR=Os01t0131600-01;KEGG=Os01t0131600-01
Chr01	irgsp1_rep	five_prime_UTR	1746416	1746541	.	+	.	Parent=Os01t0131600-01
Chr01	irgsp1_rep	CDS	1746542	1746690	.	+	0	Parent=Os01t0131600-01
Chr01	irgsp1_rep	CDS	1746867	1746936	.	+	1	Parent=Os01t0131600-01
Chr01	irgsp1_rep	three_prime_UTR	1746937	1746977	.	+	.	Parent=Os01t0131600-01
Chr01	irgsp1_rep	mRNA	1747173	1748544	.	+	.	ID=Os01t0131600-02;Name=Os01t0131600-02;Locus_id=Os01g0131600;CGSNL Gene Symbol=ERF108;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 108;Oryzabase Gene Symbol Synonym(s)=OsAP2%2C OsERF#108%2C OsERF108%2C AP2/EREBP#001%2C AP2/EREBP1%2C RD2;Oryzabase Gene Name Synonym(s)=APETALA2%2C ethylene response factor 108%2C APETALA2/ethylene-responsive element binding protein 1%2C Rice Drought-responsive gene 2;Note=Similar to pathogenesis-related transcriptional activator PTI6.;Transcript_evidence=AK062063 (DDBJ%2C Best hit);ORF_evidence=NP_001147717.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=001-044-D02;Oryzabase=10229;Expression=AK062063;TENOR=Os01t0131600-02;KEGG=Os01t0131600-02
Chr01	irgsp1_rep	five_prime_UTR	1747173	1747174	.	+	.	Parent=Os01t0131600-02
Chr01	irgsp1_rep	CDS	1747175	1748104	.	+	0	Parent=Os01t0131600-02
Chr01	irgsp1_rep	three_prime_UTR	1748105	1748544	.	+	.	Parent=Os01t0131600-02
Chr01	irgsp1_rep	mRNA	1754374	1757590	.	+	.	ID=Os01t0131800-01;Name=Os01t0131800-01;Locus_id=Os01g0131800;Note=Signal peptidase 22 kDa subunit family protein.;Transcript_evidence=AK243458 (DDBJ%2C Best hit);ORF_evidence=Q84KA8 (UniProt);GO=Biological Process: signal peptide processing (GO:0006465),Cellular Component: signal peptidase complex (GO:0005787),Cellular Component: integral to membrane (GO:0016021),Molecular Function: peptidase activity (GO:0008233);InterPro=Signal peptidase 22kDa subunit (IPR007653);NIAS_FLcDNA=J100071A04;TENOR=Os01t0131800-01;KEGG=Os01t0131800-01
Chr01	irgsp1_rep	five_prime_UTR	1754374	1754393	.	+	.	Parent=Os01t0131800-01
Chr01	irgsp1_rep	CDS	1754394	1754519	.	+	0	Parent=Os01t0131800-01
Chr01	irgsp1_rep	CDS	1755105	1755152	.	+	0	Parent=Os01t0131800-01
Chr01	irgsp1_rep	CDS	1755940	1756002	.	+	0	Parent=Os01t0131800-01
Chr01	irgsp1_rep	CDS	1756460	1756513	.	+	0	Parent=Os01t0131800-01
Chr01	irgsp1_rep	CDS	1757073	1757159	.	+	0	Parent=Os01t0131800-01
Chr01	irgsp1_rep	CDS	1757253	1757381	.	+	0	Parent=Os01t0131800-01
Chr01	irgsp1_rep	three_prime_UTR	1757382	1757590	.	+	.	Parent=Os01t0131800-01
Chr01	irgsp1_rep	mRNA	1757812	1758730	.	-	.	ID=Os01t0131900-00;Name=Os01t0131900-00;Locus_id=Os01g0131900;Note=Similar to Wound-induced protease inhibitor (WIP1).;Transcript_evidence=ab initio prediction;ORF_evidence=Q7GC15 (UniProt);GO=Cellular Component: extracellular region (GO:0005576),Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Proteinase inhibitor I12%2C Bowman-Birk (IPR000877);Oryzabase=20467;TENOR=Os01t0131900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	1758646	1758730	.	-	0	Parent=Os01t0131900-00
Chr01	irgsp1_rep	CDS	1757812	1758032	.	-	2	Parent=Os01t0131900-00
Chr01	irgsp1_rep	mRNA	1760310	1761065	.	-	.	ID=Os01t0132000-01;Name=Os01t0132000-01;Locus_id=Os01g0132000;Oryzabase Gene Symbol Synonym(s)=IAI2;Oryzabase Gene Name Synonym(s)=incompatible strain of P. avenae-induced gene 2;Note=Similar to Wound-induced protease inhibitor (WIP1).;Transcript_evidence=AK059239 (DDBJ%2C Best hit);ORF_evidence=Q7GC15 (UniProt);GO=Cellular Component: extracellular region (GO:0005576),Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Proteinase inhibitor I12%2C Bowman-Birk (IPR000877);NIAS_FLcDNA=001-024-F05;Oryzabase=13670;Expression=AK059239;TENOR=Os01t0132000-01;KEGG=Os01t0132000-01
Chr01	irgsp1_rep	five_prime_UTR	1760983	1761065	.	-	.	Parent=Os01t0132000-01
Chr01	irgsp1_rep	CDS	1760898	1760982	.	-	0	Parent=Os01t0132000-01
Chr01	irgsp1_rep	CDS	1760488	1760705	.	-	2	Parent=Os01t0132000-01
Chr01	irgsp1_rep	three_prime_UTR	1760310	1760487	.	-	.	Parent=Os01t0132000-01
Chr01	irgsp1_rep	mRNA	1764784	1770260	.	-	.	ID=Os01t0132050-01;Name=Os01t0132050-01;Locus_id=Os01g0132050;Note=Hypothetical protein.;Transcript_evidence=AK242071 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J075134D14;TENOR=Os01t0132050-01;KEGG=Os01t0132050-01
Chr01	irgsp1_rep	five_prime_UTR	1769887	1770260	.	-	.	Parent=Os01t0132050-01
Chr01	irgsp1_rep	five_prime_UTR	1766554	1768732	.	-	.	Parent=Os01t0132050-01
Chr01	irgsp1_rep	CDS	1766062	1766553	.	-	0	Parent=Os01t0132050-01
Chr01	irgsp1_rep	three_prime_UTR	1764784	1766061	.	-	.	Parent=Os01t0132050-01
Chr01	irgsp1_rep	mRNA	1765373	1768669	.	+	.	ID=Os01t0132100-00;Name=Os01t0132100-00;Locus_id=Os01g0132100;Oryzabase Gene Name Synonym(s)=Leucine-rich repeat receptor-like kinase;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001041930.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591);Oryzabase=19080;TENOR=Os01t0132100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	1765373	1768669	.	+	0	Parent=Os01t0132100-00
Chr01	irgsp1_rep	mRNA	1771497	1772410	.	-	.	ID=Os01t0132200-01;Name=Os01t0132200-01;Locus_id=Os01g0132200;Oryzabase Gene Name Synonym(s)=Expressed protein;Note=Conserved hypothetical protein.;Transcript_evidence=AK108153 (DDBJ%2C Best hit);ORF_evidence=A2WKB0 (UniProt);NIAS_FLcDNA=002-139-F12;Oryzabase=23611;Expression=AK108153;TENOR=Os01t0132200-01;KEGG=Os01t0132200-01
Chr01	irgsp1_rep	five_prime_UTR	1772348	1772410	.	-	.	Parent=Os01t0132200-01
Chr01	irgsp1_rep	CDS	1771622	1772347	.	-	0	Parent=Os01t0132200-01
Chr01	irgsp1_rep	three_prime_UTR	1771497	1771621	.	-	.	Parent=Os01t0132200-01
Chr01	irgsp1_rep	mRNA	1776044	1778105	.	-	.	ID=Os01t0132400-01;Name=Os01t0132400-01;Locus_id=Os01g0132400;Note=Conserved hypothetical protein.;Transcript_evidence=AK106795 (DDBJ%2C Best hit);ORF_evidence=A2ZNX3 (UniProt);NIAS_FLcDNA=002-116-B03;Expression=AK106795;TENOR=Os01t0132400-01;KEGG=Os01t0132400-01
Chr01	irgsp1_rep	five_prime_UTR	1778021	1778105	.	-	.	Parent=Os01t0132400-01
Chr01	irgsp1_rep	CDS	1777811	1778020	.	-	0	Parent=Os01t0132400-01
Chr01	irgsp1_rep	CDS	1777601	1777724	.	-	0	Parent=Os01t0132400-01
Chr01	irgsp1_rep	CDS	1777177	1777455	.	-	2	Parent=Os01t0132400-01
Chr01	irgsp1_rep	CDS	1776978	1777100	.	-	2	Parent=Os01t0132400-01
Chr01	irgsp1_rep	CDS	1776428	1776888	.	-	2	Parent=Os01t0132400-01
Chr01	irgsp1_rep	CDS	1776317	1776319	.	-	0	Parent=Os01t0132400-01
Chr01	irgsp1_rep	three_prime_UTR	1776044	1776316	.	-	.	Parent=Os01t0132400-01
Chr01	irgsp1_rep	mRNA	1781075	1782386	.	+	.	ID=Os01t0132500-01;Name=Os01t0132500-01;Locus_id=Os01g0132500;Note=Protein of unknown function DUF1639 domain containing protein.;Transcript_evidence=AK288006 (DDBJ%2C Best hit);ORF_evidence=NP_001041933.2 (RefSeq);InterPro=Protein of unknown function DUF1639 (IPR012438);NIAS_FLcDNA=J075112H22;TENOR=Os01t0132500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	1781075	1781274	.	+	.	Parent=Os01t0132500-01
Chr01	irgsp1_rep	CDS	1781275	1781844	.	+	0	Parent=Os01t0132500-01
Chr01	irgsp1_rep	CDS	1781949	1782017	.	+	0	Parent=Os01t0132500-01
Chr01	irgsp1_rep	three_prime_UTR	1782018	1782386	.	+	.	Parent=Os01t0132500-01
Chr01	irgsp1_rep	mRNA	1787870	1791456	.	-	.	ID=Os01t0132700-01;Name=Os01t0132700-01;Locus_id=Os01g0132700;Oryzabase Gene Symbol Synonym(s)=OsMed22_1%2C Med22_1;Oryzabase Gene Name Synonym(s)=Mediator 22_1;Note=Surfeit locus 5 family protein.;Transcript_evidence=AK241630 (DDBJ%2C Best hit);ORF_evidence=NP_001150903.1 (RefSeq);GO=Biological Process: regulation of transcription from RNA polymerase II promoter (GO:0006357),Cellular Component: mediator complex (GO:0016592),Molecular Function: RNA polymerase II transcription cofactor activity (GO:0001104);InterPro=Mediator complex%2C subunit Med22 (IPR009332);NIAS_FLcDNA=J065187N12;Oryzabase=20979;TENOR=Os01t0132700-01;KEGG=Os01t0132700-01
Chr01	irgsp1_rep	five_prime_UTR	1791436	1791456	.	-	.	Parent=Os01t0132700-01
Chr01	irgsp1_rep	CDS	1791289	1791435	.	-	0	Parent=Os01t0132700-01
Chr01	irgsp1_rep	CDS	1791135	1791200	.	-	0	Parent=Os01t0132700-01
Chr01	irgsp1_rep	CDS	1789630	1789863	.	-	0	Parent=Os01t0132700-01
Chr01	irgsp1_rep	three_prime_UTR	1789629	1789629	.	-	.	Parent=Os01t0132700-01
Chr01	irgsp1_rep	three_prime_UTR	1787870	1788183	.	-	.	Parent=Os01t0132700-01
Chr01	irgsp1_rep	mRNA	1801983	1803280	.	-	.	ID=Os01t0132766-01;Name=Os01t0132766-01;Locus_id=Os01g0132766;Note=Zinc finger%2C C2H2-like domain containing protein.;Transcript_evidence=AK243652 (DDBJ%2C Best hit);ORF_evidence=NP_001172162.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J100088J08;TENOR=Os01t0132766-01;KEGG=Os01t0132766-01
Chr01	irgsp1_rep	five_prime_UTR	1803139	1803280	.	-	.	Parent=Os01t0132766-01
Chr01	irgsp1_rep	CDS	1802335	1803138	.	-	0	Parent=Os01t0132766-01
Chr01	irgsp1_rep	three_prime_UTR	1801983	1802334	.	-	.	Parent=Os01t0132766-01
Chr01	irgsp1_rep	mRNA	1813011	1817601	.	-	.	ID=Os01t0132800-01;Name=Os01t0132800-01;Locus_id=Os01g0132800;RAP-DB Gene Symbol Synonym(s)=OsCRS2;CGSNL Gene Symbol=CRS2;CGSNL Gene Name=CHLOROPLAST RNA SPLICING 2;Oryzabase Gene Symbol Synonym(s)=OsCRS2;Oryzabase Gene Name Synonym(s)=chloroplast RNA splicing 2;Note=Homologue of maize ZmCRS2%2C Regulation of the splicing of chloroplast gene introns;Transcript_evidence=AK068422;ORF_evidence=Q5ZCL8;GO=Molecular Function: aminoacyl-tRNA hydrolase activity (GO:0004045);InterPro=Peptidyl-tRNA hydrolase superfamily (IPR036416),Peptidyl-tRNA hydrolase (IPR001328),Peptidyl-tRNA hydrolase%2C conserved site (IPR018171);NIAS_FLcDNA=J013151G18;Manual Curation=April 27%2C 2020;Literature_PMID=31500108;Oryzabase=23405;Expression=AK068422;TENOR=Os01t0132800-01;KEGG=Os01t0132800-01 (EC:3.1.1.29)
Chr01	irgsp1_rep	five_prime_UTR	1817555	1817601	.	-	.	Parent=Os01t0132800-01
Chr01	irgsp1_rep	CDS	1817306	1817554	.	-	0	Parent=Os01t0132800-01
Chr01	irgsp1_rep	CDS	1817119	1817203	.	-	0	Parent=Os01t0132800-01
Chr01	irgsp1_rep	CDS	1815856	1815923	.	-	2	Parent=Os01t0132800-01
Chr01	irgsp1_rep	CDS	1814782	1814832	.	-	0	Parent=Os01t0132800-01
Chr01	irgsp1_rep	CDS	1814618	1814691	.	-	0	Parent=Os01t0132800-01
Chr01	irgsp1_rep	CDS	1814236	1814294	.	-	1	Parent=Os01t0132800-01
Chr01	irgsp1_rep	CDS	1814082	1814158	.	-	2	Parent=Os01t0132800-01
Chr01	irgsp1_rep	CDS	1813340	1813456	.	-	0	Parent=Os01t0132800-01
Chr01	irgsp1_rep	three_prime_UTR	1813011	1813339	.	-	.	Parent=Os01t0132800-01
Chr01	irgsp1_rep	mRNA	1834110	1836549	.	+	.	ID=Os01t0133100-01;Name=Os01t0133100-01;Locus_id=Os01g0133100;Note=Conserved hypothetical protein.;Transcript_evidence=AK108760 (DDBJ%2C Best hit);ORF_evidence=A2WKB7 (UniProt);NIAS_FLcDNA=002-150-G05;TENOR=Os01t0133100-01
Chr01	irgsp1_rep	five_prime_UTR	1834110	1834220	.	+	.	Parent=Os01t0133100-01
Chr01	irgsp1_rep	CDS	1834221	1836062	.	+	0	Parent=Os01t0133100-01
Chr01	irgsp1_rep	CDS	1836429	1836549	.	+	0	Parent=Os01t0133100-01
Chr01	irgsp1_rep	mRNA	1834110	1836203	.	+	.	ID=Os01t0133100-02;Name=Os01t0133100-02;Locus_id=Os01g0133100;Note=Hypothetical conserved gene.;Transcript_evidence=AK109801 (DDBJ%2C Best hit);ORF_evidence=A2WKB7 (UniProt);NIAS_FLcDNA=002-147-F06;Expression=AK109801;TENOR=Os01t0133100-02;KEGG=Os01t0133100-02
Chr01	irgsp1_rep	five_prime_UTR	1834110	1834220	.	+	.	Parent=Os01t0133100-02
Chr01	irgsp1_rep	CDS	1834221	1836203	.	+	0	Parent=Os01t0133100-02
Chr01	irgsp1_rep	mRNA	1838282	1839194	.	-	.	ID=Os01t0133200-01;Name=Os01t0133200-01;Locus_id=Os01g0133200;Note=Conserved hypothetical protein.;Transcript_evidence=AK060424 (DDBJ%2C Best hit);ORF_evidence=A2WKB8 (UniProt);NIAS_FLcDNA=001-010-H04;Expression=AK060424;TENOR=Os01t0133200-01;KEGG=Os01t0133200-01
Chr01	irgsp1_rep	five_prime_UTR	1839107	1839194	.	-	.	Parent=Os01t0133200-01
Chr01	irgsp1_rep	CDS	1838522	1839106	.	-	0	Parent=Os01t0133200-01
Chr01	irgsp1_rep	three_prime_UTR	1838282	1838521	.	-	.	Parent=Os01t0133200-01
Chr01	irgsp1_rep	mRNA	1844263	1849102	.	+	.	ID=Os01t0133400-01;Name=Os01t0133400-01;Locus_id=Os01g0133400;CGSNL Gene Symbol=PGLCT;CGSNL Gene Name=PLASTIDIC GLUCOSE TRANSLOCATOR;Oryzabase Gene Symbol Synonym(s)=OsPGLCT;Note=Similar to Hexose transporter (Fragment).;Transcript_evidence=AK065247 (DDBJ%2C Best hit);ORF_evidence=Q9LLD9 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J013002J01;Oryzabase=8727;Expression=AK065247;TENOR=Os01t0133400-01;KEGG=Os01t0133400-01
Chr01	irgsp1_rep	CDS	1844263	1844509	.	+	0	Parent=Os01t0133400-01
Chr01	irgsp1_rep	CDS	1845583	1845694	.	+	2	Parent=Os01t0133400-01
Chr01	irgsp1_rep	CDS	1845841	1845908	.	+	1	Parent=Os01t0133400-01
Chr01	irgsp1_rep	CDS	1846165	1846297	.	+	2	Parent=Os01t0133400-01
Chr01	irgsp1_rep	CDS	1846404	1846503	.	+	1	Parent=Os01t0133400-01
Chr01	irgsp1_rep	CDS	1846610	1846722	.	+	0	Parent=Os01t0133400-01
Chr01	irgsp1_rep	CDS	1847095	1847188	.	+	1	Parent=Os01t0133400-01
Chr01	irgsp1_rep	CDS	1847273	1847426	.	+	0	Parent=Os01t0133400-01
Chr01	irgsp1_rep	CDS	1847597	1847743	.	+	2	Parent=Os01t0133400-01
Chr01	irgsp1_rep	CDS	1847819	1847892	.	+	2	Parent=Os01t0133400-01
Chr01	irgsp1_rep	CDS	1847985	1848073	.	+	0	Parent=Os01t0133400-01
Chr01	irgsp1_rep	CDS	1848161	1848275	.	+	1	Parent=Os01t0133400-01
Chr01	irgsp1_rep	CDS	1848569	1848751	.	+	0	Parent=Os01t0133400-01
Chr01	irgsp1_rep	three_prime_UTR	1848752	1849102	.	+	.	Parent=Os01t0133400-01
Chr01	irgsp1_rep	mRNA	1849887	1856251	.	+	.	ID=Os01t0133500-01;Name=Os01t0133500-01;Locus_id=Os01g0133500;Note=Beta-lactamase-like domain containing protein.;Transcript_evidence=AK101585 (DDBJ%2C Best hit);ORF_evidence=NP_564232.1 (RefSeq);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Beta-lactamase-like (IPR001279);NIAS_FLcDNA=J033050P03;Expression=AK101585;TENOR=Os01t0133500-01;KEGG=Os01t0133500-01
Chr01	irgsp1_rep	five_prime_UTR	1849887	1849969	.	+	.	Parent=Os01t0133500-01
Chr01	irgsp1_rep	CDS	1849970	1850251	.	+	0	Parent=Os01t0133500-01
Chr01	irgsp1_rep	CDS	1850419	1850566	.	+	0	Parent=Os01t0133500-01
Chr01	irgsp1_rep	CDS	1850638	1850789	.	+	2	Parent=Os01t0133500-01
Chr01	irgsp1_rep	CDS	1851146	1851328	.	+	0	Parent=Os01t0133500-01
Chr01	irgsp1_rep	CDS	1851690	1851765	.	+	0	Parent=Os01t0133500-01
Chr01	irgsp1_rep	CDS	1851956	1852033	.	+	2	Parent=Os01t0133500-01
Chr01	irgsp1_rep	CDS	1852584	1852669	.	+	2	Parent=Os01t0133500-01
Chr01	irgsp1_rep	CDS	1853680	1853753	.	+	0	Parent=Os01t0133500-01
Chr01	irgsp1_rep	CDS	1853920	1853965	.	+	1	Parent=Os01t0133500-01
Chr01	irgsp1_rep	CDS	1854211	1854320	.	+	0	Parent=Os01t0133500-01
Chr01	irgsp1_rep	CDS	1854600	1854774	.	+	1	Parent=Os01t0133500-01
Chr01	irgsp1_rep	CDS	1855579	1855749	.	+	0	Parent=Os01t0133500-01
Chr01	irgsp1_rep	three_prime_UTR	1855750	1855764	.	+	.	Parent=Os01t0133500-01
Chr01	irgsp1_rep	three_prime_UTR	1856034	1856251	.	+	.	Parent=Os01t0133500-01
Chr01	irgsp1_rep	mRNA	1849921	1855410	.	+	.	ID=Os01t0133500-02;Name=Os01t0133500-02;Locus_id=Os01g0133500;Note=Similar to predicted protein.;Transcript_evidence=AK101232 (DDBJ%2C Best hit);ORF_evidence=NP_564232.1 (RefSeq);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Beta-lactamase-like (IPR001279);NIAS_FLcDNA=J033031J06;Expression=AK101232;TENOR=Os01t0133500-02;KEGG=Os01t0133500-02
Chr01	irgsp1_rep	five_prime_UTR	1849921	1849969	.	+	.	Parent=Os01t0133500-02
Chr01	irgsp1_rep	CDS	1849970	1850251	.	+	0	Parent=Os01t0133500-02
Chr01	irgsp1_rep	CDS	1850419	1850566	.	+	0	Parent=Os01t0133500-02
Chr01	irgsp1_rep	CDS	1850638	1850789	.	+	2	Parent=Os01t0133500-02
Chr01	irgsp1_rep	CDS	1851146	1851328	.	+	0	Parent=Os01t0133500-02
Chr01	irgsp1_rep	CDS	1851690	1851765	.	+	0	Parent=Os01t0133500-02
Chr01	irgsp1_rep	CDS	1851956	1852033	.	+	2	Parent=Os01t0133500-02
Chr01	irgsp1_rep	CDS	1852584	1852669	.	+	2	Parent=Os01t0133500-02
Chr01	irgsp1_rep	CDS	1853680	1853753	.	+	0	Parent=Os01t0133500-02
Chr01	irgsp1_rep	CDS	1853920	1853965	.	+	1	Parent=Os01t0133500-02
Chr01	irgsp1_rep	CDS	1854211	1854320	.	+	0	Parent=Os01t0133500-02
Chr01	irgsp1_rep	CDS	1854600	1854774	.	+	1	Parent=Os01t0133500-02
Chr01	irgsp1_rep	CDS	1855158	1855217	.	+	0	Parent=Os01t0133500-02
Chr01	irgsp1_rep	three_prime_UTR	1855218	1855410	.	+	.	Parent=Os01t0133500-02
Chr01	irgsp1_rep	mRNA	1857083	1858534	.	+	.	ID=Os01t0133600-00;Name=Os01t0133600-00;Locus_id=Os01g0133600;Note=Hypothetical conserved gene.;Transcript_evidence=BT061103 (DDBJ);ORF_evidence=Q5ZCL9 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: acetylglucosaminyltransferase activity (GO:0008375);InterPro=Glycosyl transferase%2C family 14 (IPR003406);TENOR=Os01t0133600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	1857083	1857700	.	+	0	Parent=Os01t0133600-00
Chr01	irgsp1_rep	CDS	1857814	1858452	.	+	0	Parent=Os01t0133600-00
Chr01	irgsp1_rep	three_prime_UTR	1858453	1858534	.	+	.	Parent=Os01t0133600-00
Chr01	irgsp1_rep	mRNA	1857805	1858452	.	-	.	ID=Os01t0133650-00;Name=Os01t0133650-00;Locus_id=Os01g0133650;Note=Hypothetical gene.;Transcript_evidence=EU965974 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0133650-00;KEGG=Os01t0133650-00
Chr01	irgsp1_rep	CDS	1857805	1858452	.	-	0	Parent=Os01t0133650-00
Chr01	irgsp1_rep	mRNA	1865027	1866109	.	+	.	ID=Os01t0133700-00;Name=Os01t0133700-00;Locus_id=Os01g0133700;Note=Glycosyl transferase%2C family 14 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001041940.2 (RefSeq);GO=Cellular Component: membrane (GO:0016020),Molecular Function: acetylglucosaminyltransferase activity (GO:0008375);InterPro=Glycosyl transferase%2C family 14 (IPR003406);TENOR=Os01t0133700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	1865027	1865041	.	+	0	Parent=Os01t0133700-00
Chr01	irgsp1_rep	CDS	1865459	1866109	.	+	0	Parent=Os01t0133700-00
Chr01	irgsp1_rep	mRNA	1865235	1865307	.	-	.	ID=Os01t0133766-00;Name=Os01t0133766-00;Locus_id=Os01g0133766;Note=Non-protein coding transcript.;Transcript_evidence=X02683 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0133766-00
Chr01	irgsp1_rep	exon	1865235	1865307	.	-	.	Parent=Os01t0133766-00
Chr01	irgsp1_rep	mRNA	1865455	1866126	.	-	.	ID=Os01t0133799-00;Name=Os01t0133799-00;Locus_id=Os01g0133799;Note=Hypothetical protein.;Transcript_evidence=EU965974 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0133799-00
Chr01	irgsp1_rep	five_prime_UTR	1866125	1866126	.	-	.	Parent=Os01t0133799-00
Chr01	irgsp1_rep	CDS	1865531	1866124	.	-	0	Parent=Os01t0133799-00
Chr01	irgsp1_rep	three_prime_UTR	1865455	1865530	.	-	.	Parent=Os01t0133799-00
Chr01	irgsp1_rep	mRNA	1868093	1868762	.	-	.	ID=Os01t0133832-00;Name=Os01t0133832-00;Locus_id=Os01g0133832;Note=Hypothetical gene.;Transcript_evidence=BT018992 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0133832-00;KEGG=Os01t0133832-00
Chr01	irgsp1_rep	CDS	1868151	1868762	.	-	0	Parent=Os01t0133832-00
Chr01	irgsp1_rep	three_prime_UTR	1868093	1868150	.	-	.	Parent=Os01t0133832-00
Chr01	irgsp1_rep	mRNA	1869486	1870071	.	-	.	ID=Os01t0133866-00;Name=Os01t0133866-00;Locus_id=Os01g0133866;Note=Hypothetical protein.;Transcript_evidence=EU971977 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0133866-00
Chr01	irgsp1_rep	five_prime_UTR	1870071	1870071	.	-	.	Parent=Os01t0133866-00
Chr01	irgsp1_rep	CDS	1869603	1870070	.	-	0	Parent=Os01t0133866-00
Chr01	irgsp1_rep	three_prime_UTR	1869486	1869602	.	-	.	Parent=Os01t0133866-00
Chr01	irgsp1_rep	mRNA	1869773	1870408	.	+	.	ID=Os01t0133900-00;Name=Os01t0133900-00;Locus_id=Os01g0133900;Note=Similar to predicted protein.;Transcript_evidence=CT834929 (DDBJ%2C Best hit);ORF_evidence=D6N3G3 (UniProt);GO=Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009);TENOR=Os01t0133900-00;KEGG=Os01t0133900-00
Chr01	irgsp1_rep	CDS	1869773	1870153	.	+	0	Parent=Os01t0133900-00
Chr01	irgsp1_rep	three_prime_UTR	1870154	1870408	.	+	.	Parent=Os01t0133900-00
Chr01	irgsp1_rep	mRNA	1876913	1879901	.	+	.	ID=Os01t0134200-01;Name=Os01t0134200-01;Locus_id=Os01g0134200;Note=Similar to Universal stress protein family protein.;Transcript_evidence=AK102394 (DDBJ%2C Best hit);ORF_evidence=Q2QWV8 (UniProt);NIAS_FLcDNA=J033092F19;TENOR=Os01t0134200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	1876913	1877051	.	+	.	Parent=Os01t0134200-01
Chr01	irgsp1_rep	CDS	1877052	1877366	.	+	0	Parent=Os01t0134200-01
Chr01	irgsp1_rep	three_prime_UTR	1877367	1879901	.	+	.	Parent=Os01t0134200-01
Chr01	irgsp1_rep	mRNA	1878013	1879358	.	+	.	ID=Os01t0134200-02;Name=Os01t0134200-02;Locus_id=Os01g0134200;Note=Hypothetical conserved gene.;Transcript_evidence=AK059156 (DDBJ%2C Best hit);ORF_evidence=Q5ZCL0 (UniProt);NIAS_FLcDNA=001-023-C11;TENOR=Os01t0134200-02;KEGG=Os01t0134200-02
Chr01	irgsp1_rep	five_prime_UTR	1878013	1878014	.	+	.	Parent=Os01t0134200-02
Chr01	irgsp1_rep	CDS	1878015	1879358	.	+	0	Parent=Os01t0134200-02
Chr01	irgsp1_rep	mRNA	1888525	1892262	.	+	.	ID=Os01t0134500-01;Name=Os01t0134500-01;Locus_id=Os01g0134500;Oryzabase Gene Symbol Synonym(s)=OsSTE1%2C OsDWF7;Oryzabase Gene Name Synonym(s)=Sterol methyltransferase 1%2C Dwarf 7;Note=Similar to Delta-7-sterol-C5(6)-desaturase (EC 1.3.3.-) (Delta-7-C-5 sterol desaturase) (Delta7-sterol-C5-desaturase).;Transcript_evidence=AK111908 (DDBJ%2C Best hit),AK112014 (DDBJ%2C Best hit);ORF_evidence=NP_001148790.1 (RefSeq);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Fatty acid hydroxylase (IPR006694);NIAS_FLcDNA=J033069O22,006-212-G10;Oryzabase=11567;TENOR=Os01t0134500-01
Chr01	irgsp1_rep	five_prime_UTR	1888525	1888609	.	+	.	Parent=Os01t0134500-01
Chr01	irgsp1_rep	CDS	1888610	1888838	.	+	0	Parent=Os01t0134500-01
Chr01	irgsp1_rep	CDS	1890958	1891263	.	+	2	Parent=Os01t0134500-01
Chr01	irgsp1_rep	CDS	1891631	1891920	.	+	2	Parent=Os01t0134500-01
Chr01	irgsp1_rep	three_prime_UTR	1891921	1892262	.	+	.	Parent=Os01t0134500-01
Chr01	irgsp1_rep	mRNA	1902741	1904902	.	+	.	ID=Os01t0134700-01;Name=Os01t0134700-01;Locus_id=Os01g0134700;Oryzabase Gene Name Synonym(s)=Calmodulin binding protein;Note=Calmodulin binding protein-like family protein.;Transcript_evidence=AK111442 (DDBJ%2C Best hit);ORF_evidence=A2WKC8 (UniProt);InterPro=Calmodulin binding protein-like (IPR012416);NIAS_FLcDNA=002-183-A08;Oryzabase=18466;Expression=AK111442;TENOR=Os01t0134700-01;KEGG=Os01t0134700-01
Chr01	irgsp1_rep	five_prime_UTR	1902741	1902897	.	+	.	Parent=Os01t0134700-01
Chr01	irgsp1_rep	CDS	1902898	1902983	.	+	0	Parent=Os01t0134700-01
Chr01	irgsp1_rep	CDS	1903079	1903154	.	+	1	Parent=Os01t0134700-01
Chr01	irgsp1_rep	CDS	1903256	1903308	.	+	0	Parent=Os01t0134700-01
Chr01	irgsp1_rep	CDS	1903400	1903887	.	+	1	Parent=Os01t0134700-01
Chr01	irgsp1_rep	CDS	1903983	1904143	.	+	2	Parent=Os01t0134700-01
Chr01	irgsp1_rep	CDS	1904234	1904531	.	+	0	Parent=Os01t0134700-01
Chr01	irgsp1_rep	CDS	1904619	1904773	.	+	2	Parent=Os01t0134700-01
Chr01	irgsp1_rep	three_prime_UTR	1904774	1904902	.	+	.	Parent=Os01t0134700-01
Chr01	irgsp1_rep	mRNA	1906717	1908131	.	-	.	ID=Os01t0134800-01;Name=Os01t0134800-01;Locus_id=Os01g0134800;Note=Similar to (1%2C4)-beta-xylan endohydrolase%2C isoenzyme X-II (EC 3.2.1.8) (Fragment).;Transcript_evidence=AK063402 (DDBJ%2C Best hit);ORF_evidence=NP_001147589.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 10 (IPR001000),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-115-A04;Expression=AK063402;TENOR=Os01t0134800-01;KEGG=Os01t0134800-01 (EC:3.2.1.8)
Chr01	irgsp1_rep	five_prime_UTR	1908085	1908131	.	-	.	Parent=Os01t0134800-01
Chr01	irgsp1_rep	CDS	1906978	1908084	.	-	0	Parent=Os01t0134800-01
Chr01	irgsp1_rep	three_prime_UTR	1906717	1906977	.	-	.	Parent=Os01t0134800-01
Chr01	irgsp1_rep	mRNA	1906985	1909022	.	+	.	ID=Os01t0134850-00;Name=Os01t0134850-00;Locus_id=Os01g0134850;Note=Hypothetical protein.;Transcript_evidence=tplb0048l17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0134850-00
Chr01	irgsp1_rep	five_prime_UTR	1906985	1908086	.	+	.	Parent=Os01t0134850-00
Chr01	irgsp1_rep	CDS	1908087	1908091	.	+	0	Parent=Os01t0134850-00
Chr01	irgsp1_rep	CDS	1908497	1909022	.	+	1	Parent=Os01t0134850-00
Chr01	irgsp1_rep	mRNA	1912561	1915094	.	-	.	ID=Os01t0134900-01;Name=Os01t0134900-01;Locus_id=Os01g0134900;Note=(1%2C4)-beta-xylan endohydrolase%2C isoenzyme X-II (EC 3.2.1.8) (Fragment).;Transcript_evidence=AK241996 (DDBJ%2C Best hit);ORF_evidence=B6SW51 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: hydrolase activity%2C acting on glycosyl bonds (GO:0016798),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 10 (IPR001000),Carbohydrate-binding%2C CenC-like (IPR003305),Galactose-binding domain-like (IPR008979),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J075099P03;TENOR=Os01t0134900-01;KEGG=Os01t0134900-01 (EC:3.2.1.8)
Chr01	irgsp1_rep	five_prime_UTR	1915025	1915094	.	-	.	Parent=Os01t0134900-01
Chr01	irgsp1_rep	CDS	1915010	1915024	.	-	0	Parent=Os01t0134900-01
Chr01	irgsp1_rep	CDS	1914345	1914893	.	-	0	Parent=Os01t0134900-01
Chr01	irgsp1_rep	CDS	1912820	1913929	.	-	0	Parent=Os01t0134900-01
Chr01	irgsp1_rep	three_prime_UTR	1912561	1912819	.	-	.	Parent=Os01t0134900-01
Chr01	irgsp1_rep	mRNA	1914497	1916083	.	+	.	ID=Os01t0135000-01;Name=Os01t0135000-01;Locus_id=Os01g0135000;Note=Similar to 1%2C4-beta-D xylan xylanohydrolase (Fragment).;Transcript_evidence=AK119507 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-134-F06;Expression=AK119507;TENOR=Os01t0135000-01;KEGG=Os01t0135000-01
Chr01	irgsp1_rep	five_prime_UTR	1914497	1914872	.	+	.	Parent=Os01t0135000-01
Chr01	irgsp1_rep	five_prime_UTR	1915020	1915022	.	+	.	Parent=Os01t0135000-01
Chr01	irgsp1_rep	CDS	1915023	1915283	.	+	0	Parent=Os01t0135000-01
Chr01	irgsp1_rep	three_prime_UTR	1915284	1916083	.	+	.	Parent=Os01t0135000-01
Chr01	irgsp1_rep	mRNA	1928167	1930288	.	+	.	ID=Os01t0135600-01;Name=Os01t0135600-01;Locus_id=Os01g0135600;Note=Conserved hypothetical protein.;Transcript_evidence=AK066675 (DDBJ%2C Best hit);ORF_evidence=A2ZNZ4 (UniProt);NIAS_FLcDNA=J013073M24;TENOR=Os01t0135600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	1928167	1928219	.	+	.	Parent=Os01t0135600-01
Chr01	irgsp1_rep	CDS	1928220	1928591	.	+	0	Parent=Os01t0135600-01
Chr01	irgsp1_rep	three_prime_UTR	1928592	1929735	.	+	.	Parent=Os01t0135600-01
Chr01	irgsp1_rep	three_prime_UTR	1929907	1930288	.	+	.	Parent=Os01t0135600-01
Chr01	irgsp1_rep	mRNA	1931016	1931904	.	-	.	ID=Os01t0135700-01;Name=Os01t0135700-01;Locus_id=Os01g0135700;RAP-DB Gene Symbol Synonym(s)=OsCML16;RAP-DB Gene Name Synonym(s)=CALMODULIN-LIKE PROTEIN 16%2C calmodulin-like protein 16;CGSNL Gene Symbol=CML16;CGSNL Gene Name=CALMODULIN-LIKE PROTEIN 16;Oryzabase Gene Symbol Synonym(s)=OsCML16;Oryzabase Gene Name Synonym(s)=calmodulin-like protein 16;Note=Calmodulin-like protein%2C Calcium signalling during abiotic stress%2C Promotion of root growth and drought tolerance;Transcript_evidence=AK062711;ORF_evidence=Q5ZCK5;GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand domain pair (IPR011992),EF-hand domain (IPR002048),EF-Hand 1%2C calcium-binding site (IPR018247);NIAS_FLcDNA=001-106-C02;Manual Curation=December 11%2C 2018;Literature_PMID=28244201,17263873;Oryzabase=10502;Expression=AK062711;TENOR=Os01t0135700-01;KEGG=Os01t0135700-01
Chr01	irgsp1_rep	five_prime_UTR	1931822	1931904	.	-	.	Parent=Os01t0135700-01
Chr01	irgsp1_rep	CDS	1931276	1931821	.	-	0	Parent=Os01t0135700-01
Chr01	irgsp1_rep	three_prime_UTR	1931016	1931275	.	-	.	Parent=Os01t0135700-01
Chr01	irgsp1_rep	mRNA	1934117	1934924	.	+	.	ID=Os01t0135800-01;Name=Os01t0135800-01;Locus_id=Os01g0135800;Note=Similar to Cytosolic class I small heat shock protein 3B (Fragment).;Transcript_evidence=AK063681 (DDBJ%2C Best hit);ORF_evidence=Q943Q3 (UniProt);InterPro=Heat shock protein Hsp20 (IPR002068),HSP20-like chaperone (IPR008978);NIAS_FLcDNA=001-119-E07;Expression=AK063681;TENOR=Os01t0135800-01;KEGG=Os01t0135800-01
Chr01	irgsp1_rep	five_prime_UTR	1934117	1934246	.	+	.	Parent=Os01t0135800-01
Chr01	irgsp1_rep	CDS	1934247	1934699	.	+	0	Parent=Os01t0135800-01
Chr01	irgsp1_rep	three_prime_UTR	1934700	1934924	.	+	.	Parent=Os01t0135800-01
Chr01	irgsp1_rep	mRNA	1941012	1941851	.	+	.	ID=Os01t0135900-01;Name=Os01t0135900-01;Locus_id=Os01g0135900;CGSNL Gene Symbol=HSP17.9B;CGSNL Gene Name=17.9 KDA HEAT SHOCK PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=Oshsp17.9B.%2C OsHsp17.9B;Oryzabase Gene Name Synonym(s)=17.9 kDa heat shock protein 2;Note=Similar to Cytosolic class I small heat shock protein 3C (Fragment).;Transcript_evidence=AK064849 (DDBJ%2C Best hit);ORF_evidence=E5D3J6 (UniProt);InterPro=HSP20-like chaperone (IPR008978);NIAS_FLcDNA=J013000H01;Oryzabase=6168;Expression=AK064849;TENOR=Os01t0135900-01;KEGG=Os01t0135900-01
Chr01	irgsp1_rep	five_prime_UTR	1941012	1941148	.	+	.	Parent=Os01t0135900-01
Chr01	irgsp1_rep	CDS	1941149	1941370	.	+	0	Parent=Os01t0135900-01
Chr01	irgsp1_rep	CDS	1941378	1941383	.	+	0	Parent=Os01t0135900-01
Chr01	irgsp1_rep	three_prime_UTR	1941384	1941851	.	+	.	Parent=Os01t0135900-01
Chr01	irgsp1_rep	mRNA	1941012	1941845	.	+	.	ID=Os01t0135900-02;Name=Os01t0135900-02;Locus_id=Os01g0135900;CGSNL Gene Symbol=HSP17.9B;CGSNL Gene Name=17.9 KDA HEAT SHOCK PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=Oshsp17.9B.%2C OsHsp17.9B;Oryzabase Gene Name Synonym(s)=17.9 kDa heat shock protein 2;Note=LMW heat shock protein.;Transcript_evidence=AK119599 (DDBJ%2C Best hit),AK062091 (DDBJ%2C Best hit),AK065690 (DDBJ%2C Best hit);ORF_evidence=E5D3J6 (UniProt);InterPro=Heat shock protein Hsp20 (IPR002068),HSP20-like chaperone (IPR008978);NIAS_FLcDNA=002-117-E02,001-044-G11,J013041H01;Oryzabase=6168;Expression=AK119599;TENOR=Os01t0135900-02;KEGG=Os01t0135900-02
Chr01	irgsp1_rep	five_prime_UTR	1941012	1941148	.	+	.	Parent=Os01t0135900-02
Chr01	irgsp1_rep	CDS	1941149	1941649	.	+	0	Parent=Os01t0135900-02
Chr01	irgsp1_rep	three_prime_UTR	1941650	1941845	.	+	.	Parent=Os01t0135900-02
Chr01	irgsp1_rep	mRNA	1944276	1944948	.	-	.	ID=Os01t0136000-00;Name=Os01t0136000-00;Locus_id=Os01g0136000;CGSNL Gene Symbol=HSP16.9C;CGSNL Gene Name=16.9 KDA CLASS I HEAT SHOCK PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=Oshsp16.9C%2C OsHsp16.9C%2C HSP16.9C%2C OsHSP16.9C-CI%2C Oshsp 16.9C;Oryzabase Gene Name Synonym(s)=16.9 kDa class I heat shock protein 3%2C 16.9 kDa heat shock protein 3;Note=Similar to Cytosolic class I small heat-shock protein HSP17.5.;Transcript_evidence=AK252757 (DDBJ);ORF_evidence=E5D3J8 (UniProt);InterPro=Heat shock protein Hsp20 (IPR002068),HSP20-like chaperone (IPR008978);Oryzabase=6163;TENOR=Os01t0136000-00;KEGG=Os01t0136000-00
Chr01	irgsp1_rep	five_prime_UTR	1944923	1944948	.	-	.	Parent=Os01t0136000-00
Chr01	irgsp1_rep	CDS	1944473	1944922	.	-	0	Parent=Os01t0136000-00
Chr01	irgsp1_rep	three_prime_UTR	1944276	1944472	.	-	.	Parent=Os01t0136000-00
Chr01	irgsp1_rep	mRNA	1944426	1944968	.	+	.	ID=Os01t0136050-00;Name=Os01t0136050-00;Locus_id=Os01g0136050;Note=Similar to 16.9 kDa heat shock protein.;Transcript_evidence=BT016978 (DDBJ);ORF_evidence=E5D3J8 (UniProt);TENOR=Os01t0136050-00
Chr01	irgsp1_rep	CDS	1944426	1944968	.	+	0	Parent=Os01t0136050-00
Chr01	irgsp1_rep	mRNA	1948773	1949587	.	-	.	ID=Os01t0136100-01;Name=Os01t0136100-01;Locus_id=Os01g0136100;CGSNL Gene Symbol=HSP16.9A;CGSNL Gene Name=16.9 KDA CLASS I HEAT SHOCK PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=Oshsp16.9A%2C OsHsp16.9A%2C HSP16.9A%2C OsHSP16.9A-CI;Oryzabase Gene Name Synonym(s)=16.9 kDa class I heat shock protein 1%2C 16.9 kDa heat shock protein 1;Note=16.9 kDa class I heat shock protein 1.;Transcript_evidence=AK242299 (DDBJ%2C Best hit);ORF_evidence=P27777 (UniProt);InterPro=Heat shock protein Hsp20 (IPR002068),HSP20-like chaperone (IPR008978);NIAS_FLcDNA=J075192I02;Oryzabase=6161;TENOR=Os01t0136100-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	1949458	1949587	.	-	.	Parent=Os01t0136100-01
Chr01	irgsp1_rep	CDS	1949005	1949457	.	-	0	Parent=Os01t0136100-01
Chr01	irgsp1_rep	three_prime_UTR	1948773	1949004	.	-	.	Parent=Os01t0136100-01
Chr01	irgsp1_rep	mRNA	1951930	1952681	.	+	.	ID=Os01t0136200-01;Name=Os01t0136200-01;Locus_id=Os01g0136200;CGSNL Gene Symbol=HSP16.9B;CGSNL Gene Name=16.9 KDA CLASS I HEAT SHOCK PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=Oshsp16.9B%2C OsHsp16.9B%2C HSP16.9B%2C OsHsp17.0%2C OsHSP16.9B-CI%2C OsHSP17.0%2C OsSHSP2%2C OsSTA3;Oryzabase Gene Name Synonym(s)=16.9 kDa class I heat shock protein 2%2C 16.9 kDa heat shock protein 2;Note=16.9 kDa class I heat shock protein 1.;Transcript_evidence=AK121025 (DDBJ%2C Best hit);ORF_evidence=E5D3J7 (UniProt);InterPro=Heat shock protein Hsp20 (IPR002068),HSP20-like chaperone (IPR008978);NIAS_FLcDNA=J023050A14;Oryzabase=6162;Expression=AK121025;TENOR=Os01t0136200-01;KEGG=Os01t0136200-01
Chr01	irgsp1_rep	five_prime_UTR	1951930	1952046	.	+	.	Parent=Os01t0136200-01
Chr01	irgsp1_rep	CDS	1952047	1952499	.	+	0	Parent=Os01t0136200-01
Chr01	irgsp1_rep	three_prime_UTR	1952500	1952681	.	+	.	Parent=Os01t0136200-01
Chr01	irgsp1_rep	mRNA	1955181	1955914	.	-	.	ID=Os01t0136300-01;Name=Os01t0136300-01;Locus_id=Os01g0136300;Note=Conserved hypothetical protein.;Transcript_evidence=AK062428 (DDBJ%2C Best hit);ORF_evidence=A2WKD8 (UniProt);NIAS_FLcDNA=001-102-H06;Expression=AK062428;TENOR=Os01t0136300-01;KEGG=Os01t0136300-01
Chr01	irgsp1_rep	five_prime_UTR	1955885	1955914	.	-	.	Parent=Os01t0136300-01
Chr01	irgsp1_rep	CDS	1955414	1955884	.	-	0	Parent=Os01t0136300-01
Chr01	irgsp1_rep	three_prime_UTR	1955181	1955413	.	-	.	Parent=Os01t0136300-01
Chr01	irgsp1_rep	mRNA	1957847	1967451	.	-	.	ID=Os01t0136400-01;Name=Os01t0136400-01;Locus_id=Os01g0136400;CGSNL Gene Symbol=WAK1;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 1;Oryzabase Gene Symbol Synonym(s)=OsWAK1%2C WAK-1;Oryzabase Gene Name Synonym(s)=Wall-Associated kinase 1;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK065470 (DDBJ%2C Best hit);ORF_evidence=F2DEF9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013020L24;Oryzabase=6901;Expression=AK065470;TENOR=Os01t0136400-01;KEGG=Os01t0136400-01
Chr01	irgsp1_rep	five_prime_UTR	1967326	1967451	.	-	.	Parent=Os01t0136400-01
Chr01	irgsp1_rep	CDS	1966545	1967325	.	-	0	Parent=Os01t0136400-01
Chr01	irgsp1_rep	CDS	1959587	1959619	.	-	2	Parent=Os01t0136400-01
Chr01	irgsp1_rep	CDS	1959213	1959467	.	-	2	Parent=Os01t0136400-01
Chr01	irgsp1_rep	CDS	1958104	1959041	.	-	2	Parent=Os01t0136400-01
Chr01	irgsp1_rep	three_prime_UTR	1957847	1958103	.	-	.	Parent=Os01t0136400-01
Chr01	irgsp1_rep	mRNA	1961587	1962403	.	-	.	ID=Os01t0136450-00;Name=Os01t0136450-00;Locus_id=Os01g0136450;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2ZP02 (UniProt);TENOR=Os01t0136450-00
Chr01	irgsp1_rep	CDS	1961728	1962403	.	-	0	Parent=Os01t0136450-00
Chr01	irgsp1_rep	CDS	1961587	1961603	.	-	2	Parent=Os01t0136450-00
Chr01	irgsp1_rep	mRNA	1962884	1963627	.	-	.	ID=Os01t0136500-00;Name=Os01t0136500-00;Locus_id=Os01g0136500;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2ZP03 (UniProt);TENOR=Os01t0136500-00;KEGG=Os01t0136500-00
Chr01	irgsp1_rep	CDS	1962884	1963627	.	-	0	Parent=Os01t0136500-00
Chr01	irgsp1_rep	mRNA	1966504	1967491	.	+	.	ID=Os01t0136502-00;Name=Os01t0136502-00;Locus_id=Os01g0136502;Note=Hypothetical protein.;Transcript_evidence=FP099109 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0136502-00
Chr01	irgsp1_rep	five_prime_UTR	1966504	1966764	.	+	.	Parent=Os01t0136502-00
Chr01	irgsp1_rep	five_prime_UTR	1966913	1967065	.	+	.	Parent=Os01t0136502-00
Chr01	irgsp1_rep	CDS	1967066	1967449	.	+	0	Parent=Os01t0136502-00
Chr01	irgsp1_rep	three_prime_UTR	1967450	1967491	.	+	.	Parent=Os01t0136502-00
Chr01	irgsp1_rep	mRNA	1970071	1970782	.	+	.	ID=Os01t0136600-01;Name=Os01t0136600-01;Locus_id=Os01g0136600;Note=Conserved hypothetical protein.;Transcript_evidence=AK107801 (DDBJ%2C Best hit);ORF_evidence=NP_001056956.1 (RefSeq);NIAS_FLcDNA=002-133-E03;TENOR=Os01t0136600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	1970071	1970515	.	+	.	Parent=Os01t0136600-01
Chr01	irgsp1_rep	CDS	1970516	1970656	.	+	0	Parent=Os01t0136600-01
Chr01	irgsp1_rep	three_prime_UTR	1970657	1970782	.	+	.	Parent=Os01t0136600-01
Chr01	irgsp1_rep	mRNA	1971228	1975465	.	-	.	ID=Os01t0136700-01;Name=Os01t0136700-01;Locus_id=Os01g0136700;Note=Conserved hypothetical protein.;Transcript_evidence=AK243632 (DDBJ%2C Best hit);ORF_evidence=NP_001172165.1 (RefSeq);NIAS_FLcDNA=J100087C20;TENOR=Os01t0136700-01;KEGG=Os01t0136700-01
Chr01	irgsp1_rep	five_prime_UTR	1975465	1975465	.	-	.	Parent=Os01t0136700-01
Chr01	irgsp1_rep	CDS	1974517	1975464	.	-	0	Parent=Os01t0136700-01
Chr01	irgsp1_rep	three_prime_UTR	1971228	1974516	.	-	.	Parent=Os01t0136700-01
Chr01	irgsp1_rep	mRNA	1977423	1982484	.	-	.	ID=Os01t0136800-01;Name=Os01t0136800-01;Locus_id=Os01g0136800;CGSNL Gene Symbol=WAK2;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 2;Oryzabase Gene Symbol Synonym(s)=OsWAK2;Oryzabase Gene Name Synonym(s)=Wall-Associated kinase 2;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK072170 (DDBJ%2C Best hit);ORF_evidence=NP_001147997.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013129P20;Oryzabase=6902;Expression=AK072170;TENOR=Os01t0136800-01;KEGG=Os01t0136800-01
Chr01	irgsp1_rep	five_prime_UTR	1982346	1982484	.	-	.	Parent=Os01t0136800-01
Chr01	irgsp1_rep	CDS	1981556	1982345	.	-	0	Parent=Os01t0136800-01
Chr01	irgsp1_rep	CDS	1979243	1979275	.	-	2	Parent=Os01t0136800-01
Chr01	irgsp1_rep	CDS	1978649	1978909	.	-	2	Parent=Os01t0136800-01
Chr01	irgsp1_rep	CDS	1977645	1978561	.	-	2	Parent=Os01t0136800-01
Chr01	irgsp1_rep	three_prime_UTR	1977423	1977644	.	-	.	Parent=Os01t0136800-01
Chr01	irgsp1_rep	mRNA	1977659	1982249	.	+	.	ID=Os01t0136850-00;Name=Os01t0136850-00;Locus_id=Os01g0136850;Note=Hypothetical protein.;Transcript_evidence=tplb0046c23 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0136850-00
Chr01	irgsp1_rep	five_prime_UTR	1977659	1977659	.	+	.	Parent=Os01t0136850-00
Chr01	irgsp1_rep	CDS	1977660	1978581	.	+	0	Parent=Os01t0136850-00
Chr01	irgsp1_rep	CDS	1978669	1978784	.	+	2	Parent=Os01t0136850-00
Chr01	irgsp1_rep	three_prime_UTR	1978785	1978860	.	+	.	Parent=Os01t0136850-00
Chr01	irgsp1_rep	three_prime_UTR	1981510	1982249	.	+	.	Parent=Os01t0136850-00
Chr01	irgsp1_rep	mRNA	1984267	1986150	.	+	.	ID=Os01t0136900-00;Name=Os01t0136900-00;Locus_id=Os01g0136900;Note=Similar to Stress-induced receptor-like kinase 2.;Transcript_evidence=ab initio prediction;ORF_evidence=A5JS88 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os01t0136900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	1984267	1985008	.	+	0	Parent=Os01t0136900-00
Chr01	irgsp1_rep	CDS	1985148	1985180	.	+	2	Parent=Os01t0136900-00
Chr01	irgsp1_rep	CDS	1985280	1986067	.	+	2	Parent=Os01t0136900-00
Chr01	irgsp1_rep	CDS	1986139	1986150	.	+	0	Parent=Os01t0136900-00
Chr01	irgsp1_rep	mRNA	1984341	1985008	.	-	.	ID=Os01t0137066-00;Name=Os01t0137066-00;Locus_id=Os01g0137066;Note=Non-protein coding transcript.;Transcript_evidence=FP099109 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0137066-00
Chr01	irgsp1_rep	exon	1984780	1985008	.	-	.	Parent=Os01t0137066-00
Chr01	irgsp1_rep	exon	1984341	1984644	.	-	.	Parent=Os01t0137066-00
Chr01	irgsp1_rep	mRNA	1988797	1996845	.	-	.	ID=Os01t0137125-00;Name=Os01t0137125-00;Locus_id=Os01g0137125;Note=Hypothetical protein.;Transcript_evidence=tplb0026e19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0137125-00
Chr01	irgsp1_rep	five_prime_UTR	1995812	1996845	.	-	.	Parent=Os01t0137125-00
Chr01	irgsp1_rep	five_prime_UTR	1989250	1989455	.	-	.	Parent=Os01t0137125-00
Chr01	irgsp1_rep	CDS	1988851	1989249	.	-	0	Parent=Os01t0137125-00
Chr01	irgsp1_rep	three_prime_UTR	1988797	1988850	.	-	.	Parent=Os01t0137125-00
Chr01	irgsp1_rep	mRNA	1992244	1997867	.	-	.	ID=Os01t0137150-01;Name=Os01t0137150-01;Locus_id=Os01g0137150;Note=Non-protein coding transcript.;Transcript_evidence=AK240799 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065002H05;Oryzabase=22574;TENOR=Os01t0137150-01
Chr01	irgsp1_rep	exon	1997678	1997867	.	-	.	Parent=Os01t0137150-01
Chr01	irgsp1_rep	exon	1992244	1992633	.	-	.	Parent=Os01t0137150-01
Chr01	irgsp1_rep	mRNA	1993553	1994320	.	+	.	ID=Os01t0137200-00;Name=Os01t0137200-00;Locus_id=Os01g0137200;CGSNL Gene Symbol=RLCK20;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 20;Oryzabase Gene Symbol Synonym(s)=OsRLCK20;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 20;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001041963.2 (RefSeq);Oryzabase=18740;TENOR=Os01t0137200-00;KEGG=Os01t0137200-00
Chr01	irgsp1_rep	CDS	1993553	1994320	.	+	0	Parent=Os01t0137200-00
Chr01	irgsp1_rep	mRNA	1985288	1986316	.	-	.	ID=Os01t0137232-00;Name=Os01t0137232-00;Locus_id=Os01g0137232;Note=Non-protein coding transcript.;Transcript_evidence=tplb0026e19 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os01t0137232-00
Chr01	irgsp1_rep	exon	1985288	1986316	.	-	.	Parent=Os01t0137232-00
Chr01	irgsp1_rep	mRNA	1995550	1996857	.	+	.	ID=Os01t0137250-00;Name=Os01t0137250-00;Locus_id=Os01g0137250;CGSNL Gene Symbol=RLCK20;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 20;Oryzabase Gene Symbol Synonym(s)=OsRLCK20;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 20;Note=Similar to Stress-induced receptor-like kinase 2.;Transcript_evidence=ab initio prediction;ORF_evidence=A5JS88 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18740;TENOR=Os01t0137250-00
Chr01	irgsp1_rep	CDS	1995550	1995649	.	+	0	Parent=Os01t0137250-00
Chr01	irgsp1_rep	CDS	1995806	1996857	.	+	2	Parent=Os01t0137250-00
Chr01	irgsp1_rep	mRNA	1998852	1999549	.	-	.	ID=Os01t0137266-00;Name=Os01t0137266-00;Locus_id=Os01g0137266;Note=Hypothetical protein.;Transcript_evidence=FP099109 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0137266-00
Chr01	irgsp1_rep	five_prime_UTR	1999548	1999549	.	-	.	Parent=Os01t0137266-00
Chr01	irgsp1_rep	CDS	1999415	1999547	.	-	0	Parent=Os01t0137266-00
Chr01	irgsp1_rep	CDS	1998893	1999302	.	-	2	Parent=Os01t0137266-00
Chr01	irgsp1_rep	three_prime_UTR	1998852	1998892	.	-	.	Parent=Os01t0137266-00
Chr01	irgsp1_rep	mRNA	1998872	1999654	.	+	.	ID=Os01t0137282-00;Name=Os01t0137282-00;Locus_id=Os01g0137282;CGSNL Gene Symbol=RLCK21;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 21;Oryzabase Gene Symbol Synonym(s)=OsRLCK21;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 21;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5ZC61 (UniProt);Oryzabase=18741;TENOR=Os01t0137282-00
Chr01	irgsp1_rep	CDS	1998872	1999654	.	+	0	Parent=Os01t0137282-00
Chr01	irgsp1_rep	mRNA	2000724	2003913	.	-	.	ID=Os01t0137300-01;Name=Os01t0137300-01;Locus_id=Os01g0137300;Note=Hypothetical protein.;Transcript_evidence=AK072903 (DDBJ%2C Best hit),AK072764 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023144H13,J023137P10;Expression=AK072903;TENOR=Os01t0137300-01;KEGG=Os01t0137300-01
Chr01	irgsp1_rep	five_prime_UTR	2001987	2003913	.	-	.	Parent=Os01t0137300-01
Chr01	irgsp1_rep	CDS	2001705	2001986	.	-	0	Parent=Os01t0137300-01
Chr01	irgsp1_rep	three_prime_UTR	2000724	2001704	.	-	.	Parent=Os01t0137300-01
Chr01	irgsp1_rep	mRNA	1988716	2003083	.	+	.	ID=Os01t0137400-00;Name=Os01t0137400-00;Locus_id=Os01g0137400;CGSNL Gene Symbol=RLCK21;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 21;Oryzabase Gene Symbol Synonym(s)=OsRLCK21;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 21;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=BT067456 (DDBJ);ORF_evidence=B9EZD9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18741;TENOR=Os01t0137400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	1988716	1989407	.	+	0	Parent=Os01t0137400-00
Chr01	irgsp1_rep	CDS	2001203	2001234	.	+	1	Parent=Os01t0137400-00
Chr01	irgsp1_rep	CDS	2001786	2002851	.	+	2	Parent=Os01t0137400-00
Chr01	irgsp1_rep	CDS	2002940	2003063	.	+	1	Parent=Os01t0137400-00
Chr01	irgsp1_rep	three_prime_UTR	2003064	2003083	.	+	.	Parent=Os01t0137400-00
Chr01	irgsp1_rep	mRNA	2014791	2018248	.	+	.	ID=Os01t0137500-01;Name=Os01t0137500-01;Locus_id=Os01g0137500;CGSNL Gene Symbol=RLCK22;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 22;Oryzabase Gene Symbol Synonym(s)=OsRLCK22;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 22;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK072359 (DDBJ%2C Best hit);ORF_evidence=Q5ZC62 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023063C07;Oryzabase=18742;TENOR=Os01t0137500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	2014791	2017043	.	+	.	Parent=Os01t0137500-01
Chr01	irgsp1_rep	CDS	2017044	2018057	.	+	0	Parent=Os01t0137500-01
Chr01	irgsp1_rep	three_prime_UTR	2018058	2018248	.	+	.	Parent=Os01t0137500-01
Chr01	irgsp1_rep	mRNA	2015899	2018829	.	-	.	ID=Os01t0137550-01;Name=Os01t0137550-01;Locus_id=Os01g0137550;Note=Similar to H0215A08.3 protein.;Transcript_evidence=AK240976 (DDBJ%2C Best hit);ORF_evidence=Q01N39 (UniProt);NIAS_FLcDNA=J065047L03;TENOR=Os01t0137550-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	2018775	2018829	.	-	.	Parent=Os01t0137550-01
Chr01	irgsp1_rep	five_prime_UTR	2018421	2018539	.	-	.	Parent=Os01t0137550-01
Chr01	irgsp1_rep	five_prime_UTR	2016193	2016431	.	-	.	Parent=Os01t0137550-01
Chr01	irgsp1_rep	CDS	2016025	2016192	.	-	0	Parent=Os01t0137550-01
Chr01	irgsp1_rep	three_prime_UTR	2015899	2016024	.	-	.	Parent=Os01t0137550-01
Chr01	irgsp1_rep	mRNA	2023879	2026177	.	+	.	ID=Os01t0137700-01;Name=Os01t0137700-01;Locus_id=Os01g0137700;Note=Conserved hypothetical protein.;Transcript_evidence=AK099988 (DDBJ%2C Best hit);ORF_evidence=NP_001172165.1 (RefSeq);NIAS_FLcDNA=J013130L23;Expression=AK099988;TENOR=Os01t0137700-01;KEGG=Os01t0137700-01
Chr01	irgsp1_rep	five_prime_UTR	2023879	2024018	.	+	.	Parent=Os01t0137700-01
Chr01	irgsp1_rep	CDS	2024019	2024802	.	+	0	Parent=Os01t0137700-01
Chr01	irgsp1_rep	CDS	2024894	2024997	.	+	2	Parent=Os01t0137700-01
Chr01	irgsp1_rep	three_prime_UTR	2024998	2026177	.	+	.	Parent=Os01t0137700-01
Chr01	irgsp1_rep	mRNA	2024131	2024778	.	-	.	ID=Os01t0137750-00;Name=Os01t0137750-00;Locus_id=Os01g0137750;Note=Non-protein coding transcript.;Transcript_evidence=FP099109 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0137750-00
Chr01	irgsp1_rep	exon	2024622	2024778	.	-	.	Parent=Os01t0137750-00
Chr01	irgsp1_rep	exon	2024131	2024471	.	-	.	Parent=Os01t0137750-00
Chr01	irgsp1_rep	mRNA	2029671	2034609	.	+	.	ID=Os01t0137800-01;Name=Os01t0137800-01;Locus_id=Os01g0137800;Note=Non-protein coding transcript.;Transcript_evidence=AK067239 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013096F21;TENOR=Os01t0137800-01
Chr01	irgsp1_rep	exon	2029671	2034609	.	+	.	Parent=Os01t0137800-01
Chr01	irgsp1_rep	mRNA	2036653	2038001	.	-	.	ID=Os01t0137875-00;Name=Os01t0137875-00;Locus_id=Os01g0137875;Note=Non-protein coding transcript.;Transcript_evidence=tplb0026e19 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os01t0137875-00
Chr01	irgsp1_rep	exon	2037892	2038001	.	-	.	Parent=Os01t0137875-00
Chr01	irgsp1_rep	exon	2036653	2037778	.	-	.	Parent=Os01t0137875-00
Chr01	irgsp1_rep	mRNA	2037202	2038198	.	+	.	ID=Os01t0137950-01;Name=Os01t0137950-01;Locus_id=Os01g0137950;CGSNL Gene Symbol=RLCK23;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 23;Oryzabase Gene Symbol Synonym(s)=OsRLCK23;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 23;Note=Similar to predicted protein.;Transcript_evidence=AK288077 (DDBJ%2C Best hit);ORF_evidence=D3G6F0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J075164B06;Oryzabase=18743;TENOR=Os01t0137950-01;KEGG=Os01t0137950-01
Chr01	irgsp1_rep	five_prime_UTR	2037202	2037203	.	+	.	Parent=Os01t0137950-01
Chr01	irgsp1_rep	CDS	2037204	2037745	.	+	0	Parent=Os01t0137950-01
Chr01	irgsp1_rep	CDS	2037827	2037899	.	+	1	Parent=Os01t0137950-01
Chr01	irgsp1_rep	three_prime_UTR	2037900	2038198	.	+	.	Parent=Os01t0137950-01
Chr01	irgsp1_rep	mRNA	2042088	2042762	.	-	.	ID=Os01t0138000-00;Name=Os01t0138000-00;Locus_id=Os01g0138000;Note=Hypothetical protein.;Transcript_evidence=FP099109 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0138000-00
Chr01	irgsp1_rep	five_prime_UTR	2042760	2042762	.	-	.	Parent=Os01t0138000-00
Chr01	irgsp1_rep	CDS	2042555	2042759	.	-	0	Parent=Os01t0138000-00
Chr01	irgsp1_rep	CDS	2042315	2042415	.	-	2	Parent=Os01t0138000-00
Chr01	irgsp1_rep	three_prime_UTR	2042088	2042314	.	-	.	Parent=Os01t0138000-00
Chr01	irgsp1_rep	mRNA	2046146	2053048	.	-	.	ID=Os01t0138100-01;Name=Os01t0138100-01;Locus_id=Os01g0138100;Note=Conserved hypothetical protein.;Transcript_evidence=AK107843 (DDBJ%2C Best hit);ORF_evidence=Q8W2Y2 (UniProt);NIAS_FLcDNA=002-133-H12;TENOR=Os01t0138100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	2052667	2053048	.	-	.	Parent=Os01t0138100-01
Chr01	irgsp1_rep	five_prime_UTR	2046661	2046744	.	-	.	Parent=Os01t0138100-01
Chr01	irgsp1_rep	CDS	2046469	2046660	.	-	0	Parent=Os01t0138100-01
Chr01	irgsp1_rep	three_prime_UTR	2046146	2046468	.	-	.	Parent=Os01t0138100-01
Chr01	irgsp1_rep	mRNA	2048615	2049566	.	-	.	ID=Os01t0138232-00;Name=Os01t0138232-00;Locus_id=Os01g0138232;Note=Hypothetical protein.;Transcript_evidence=FP099109 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0138232-00
Chr01	irgsp1_rep	five_prime_UTR	2049342	2049566	.	-	.	Parent=Os01t0138232-00
Chr01	irgsp1_rep	five_prime_UTR	2049041	2049193	.	-	.	Parent=Os01t0138232-00
Chr01	irgsp1_rep	CDS	2048789	2049040	.	-	0	Parent=Os01t0138232-00
Chr01	irgsp1_rep	three_prime_UTR	2048615	2048788	.	-	.	Parent=Os01t0138232-00
Chr01	irgsp1_rep	mRNA	2048717	2052514	.	+	.	ID=Os01t0138300-01;Name=Os01t0138300-01;Locus_id=Os01g0138300;Note=Conserved hypothetical protein.;Transcript_evidence=AK070932 (DDBJ%2C Best hit);ORF_evidence=B8AD55 (UniProt);NIAS_FLcDNA=J023065D19;TENOR=Os01t0138300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	2048717	2048792	.	+	.	Parent=Os01t0138300-01
Chr01	irgsp1_rep	CDS	2048793	2049561	.	+	0	Parent=Os01t0138300-01
Chr01	irgsp1_rep	CDS	2050865	2050893	.	+	2	Parent=Os01t0138300-01
Chr01	irgsp1_rep	three_prime_UTR	2050894	2050896	.	+	.	Parent=Os01t0138300-01
Chr01	irgsp1_rep	three_prime_UTR	2051068	2052133	.	+	.	Parent=Os01t0138300-01
Chr01	irgsp1_rep	three_prime_UTR	2052215	2052514	.	+	.	Parent=Os01t0138300-01
Chr01	irgsp1_rep	mRNA	2048745	2052470	.	+	.	ID=Os01t0138300-02;Name=Os01t0138300-02;Locus_id=Os01g0138300;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK099912 (DDBJ%2C Best hit);ORF_evidence=B8AD55 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013116E02;Expression=AK099912;TENOR=Os01t0138300-02;KEGG=Os01t0138300-02
Chr01	irgsp1_rep	five_prime_UTR	2048745	2048792	.	+	.	Parent=Os01t0138300-02
Chr01	irgsp1_rep	CDS	2048793	2049561	.	+	0	Parent=Os01t0138300-02
Chr01	irgsp1_rep	CDS	2050861	2050896	.	+	2	Parent=Os01t0138300-02
Chr01	irgsp1_rep	CDS	2051068	2052133	.	+	2	Parent=Os01t0138300-02
Chr01	irgsp1_rep	CDS	2052215	2052368	.	+	1	Parent=Os01t0138300-02
Chr01	irgsp1_rep	three_prime_UTR	2052369	2052470	.	+	.	Parent=Os01t0138300-02
Chr01	irgsp1_rep	mRNA	2051041	2052354	.	-	.	ID=Os01t0138350-00;Name=Os01t0138350-00;Locus_id=Os01g0138350;Note=Non-protein coding transcript.;Transcript_evidence=tplb0026e19 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os01t0138350-00
Chr01	irgsp1_rep	exon	2052280	2052354	.	-	.	Parent=Os01t0138350-00
Chr01	irgsp1_rep	exon	2051041	2052166	.	-	.	Parent=Os01t0138350-00
Chr01	irgsp1_rep	mRNA	2053583	2057636	.	+	.	ID=Os01t0138400-01;Name=Os01t0138400-01;Locus_id=Os01g0138400;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK110482 (DDBJ%2C Best hit);ORF_evidence=A5JS88 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=002-167-A07;Expression=AK110482;TENOR=Os01t0138400-01;KEGG=Os01t0138400-01
Chr01	irgsp1_rep	five_prime_UTR	2053583	2053598	.	+	.	Parent=Os01t0138400-01
Chr01	irgsp1_rep	CDS	2053599	2054358	.	+	0	Parent=Os01t0138400-01
Chr01	irgsp1_rep	CDS	2055813	2055848	.	+	2	Parent=Os01t0138400-01
Chr01	irgsp1_rep	CDS	2056047	2057268	.	+	2	Parent=Os01t0138400-01
Chr01	irgsp1_rep	CDS	2057381	2057414	.	+	1	Parent=Os01t0138400-01
Chr01	irgsp1_rep	three_prime_UTR	2057415	2057636	.	+	.	Parent=Os01t0138400-01
Chr01	irgsp1_rep	mRNA	2053618	2054336	.	-	.	ID=Os01t0138451-00;Name=Os01t0138451-00;Locus_id=Os01g0138451;Note=Hypothetical protein.;Transcript_evidence=FP099109 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0138451-00
Chr01	irgsp1_rep	CDS	2054154	2054336	.	-	0	Parent=Os01t0138451-00
Chr01	irgsp1_rep	CDS	2053721	2054020	.	-	0	Parent=Os01t0138451-00
Chr01	irgsp1_rep	three_prime_UTR	2053618	2053720	.	-	.	Parent=Os01t0138451-00
Chr01	irgsp1_rep	mRNA	2059309	2062226	.	+	.	ID=Os01t0138500-01;Name=Os01t0138500-01;Locus_id=Os01g0138500;Note=Protein of unknown function DUF789 family protein.;Transcript_evidence=AK073435 (DDBJ%2C Best hit);ORF_evidence=B8AD56 (UniProt);InterPro=Protein of unknown function DUF789 (IPR008507);NIAS_FLcDNA=J033039C22;Expression=AK073435;TENOR=Os01t0138500-01;KEGG=Os01t0138500-01
Chr01	irgsp1_rep	five_prime_UTR	2059309	2059442	.	+	.	Parent=Os01t0138500-01
Chr01	irgsp1_rep	CDS	2059443	2059565	.	+	0	Parent=Os01t0138500-01
Chr01	irgsp1_rep	CDS	2059870	2060087	.	+	0	Parent=Os01t0138500-01
Chr01	irgsp1_rep	CDS	2060962	2061206	.	+	1	Parent=Os01t0138500-01
Chr01	irgsp1_rep	CDS	2061301	2061388	.	+	2	Parent=Os01t0138500-01
Chr01	irgsp1_rep	CDS	2061499	2061590	.	+	1	Parent=Os01t0138500-01
Chr01	irgsp1_rep	CDS	2061697	2061938	.	+	2	Parent=Os01t0138500-01
Chr01	irgsp1_rep	three_prime_UTR	2061939	2062226	.	+	.	Parent=Os01t0138500-01
Chr01	irgsp1_rep	mRNA	2063615	2065995	.	-	.	ID=Os01t0138600-01;Name=Os01t0138600-01;Locus_id=Os01g0138600;Note=phosphotransferase system%2C PEP-utilising enzyme%2C N-terminal domain containing protein.;Transcript_evidence=AK100982 (DDBJ%2C Best hit);ORF_evidence=A2ZP20 (UniProt);NIAS_FLcDNA=J023144O06;Expression=AK100982;TENOR=Os01t0138600-01;KEGG=Os01t0138600-01
Chr01	irgsp1_rep	five_prime_UTR	2065929	2065995	.	-	.	Parent=Os01t0138600-01
Chr01	irgsp1_rep	CDS	2065881	2065928	.	-	0	Parent=Os01t0138600-01
Chr01	irgsp1_rep	CDS	2065709	2065775	.	-	0	Parent=Os01t0138600-01
Chr01	irgsp1_rep	CDS	2065500	2065557	.	-	2	Parent=Os01t0138600-01
Chr01	irgsp1_rep	CDS	2065306	2065367	.	-	1	Parent=Os01t0138600-01
Chr01	irgsp1_rep	CDS	2064844	2065076	.	-	2	Parent=Os01t0138600-01
Chr01	irgsp1_rep	CDS	2064697	2064735	.	-	0	Parent=Os01t0138600-01
Chr01	irgsp1_rep	three_prime_UTR	2063615	2064696	.	-	.	Parent=Os01t0138600-01
Chr01	irgsp1_rep	mRNA	2071843	2073609	.	+	.	ID=Os01t0138800-01;Name=Os01t0138800-01;Locus_id=Os01g0138800;Note=Peptidase C26 domain containing protein.;Transcript_evidence=AK106157 (DDBJ%2C Best hit);ORF_evidence=NP_568556.3 (RefSeq);GO=Biological Process: glutamine metabolic process (GO:0006541),Molecular Function: hydrolase activity (GO:0016787);InterPro=Peptidase C26 (IPR011697),Glutamine amidotransferase type 1 (IPR017926);NIAS_FLcDNA=001-208-A06;Expression=AK106157;TENOR=Os01t0138800-01;KEGG=Os01t0138800-01
Chr01	irgsp1_rep	five_prime_UTR	2071843	2071969	.	+	.	Parent=Os01t0138800-01
Chr01	irgsp1_rep	CDS	2071970	2072063	.	+	0	Parent=Os01t0138800-01
Chr01	irgsp1_rep	CDS	2072168	2073117	.	+	2	Parent=Os01t0138800-01
Chr01	irgsp1_rep	CDS	2073217	2073468	.	+	0	Parent=Os01t0138800-01
Chr01	irgsp1_rep	three_prime_UTR	2073469	2073609	.	+	.	Parent=Os01t0138800-01
Chr01	irgsp1_rep	mRNA	2074795	2077903	.	-	.	ID=Os01t0138900-01;Name=Os01t0138900-01;Locus_id=Os01g0138900;Note=Mandelate racemase/muconate lactonizing enzyme family protein.;Transcript_evidence=AK058378 (DDBJ%2C Best hit);ORF_evidence=NP_566605.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Mandelate racemase/muconate lactonizing enzyme (IPR001354),Mandelate racemase/muconate lactonizing enzyme%2C N-terminal (IPR013341),Mandelate racemase/muconate lactonizing enzyme%2C C-terminal (IPR013342);NIAS_FLcDNA=001-014-H01;Expression=AK058378;TENOR=Os01t0138900-01;KEGG=Os01t0138900-01
Chr01	irgsp1_rep	five_prime_UTR	2077841	2077903	.	-	.	Parent=Os01t0138900-01
Chr01	irgsp1_rep	CDS	2077304	2077840	.	-	0	Parent=Os01t0138900-01
Chr01	irgsp1_rep	CDS	2076575	2076685	.	-	0	Parent=Os01t0138900-01
Chr01	irgsp1_rep	CDS	2076271	2076487	.	-	0	Parent=Os01t0138900-01
Chr01	irgsp1_rep	CDS	2075790	2076123	.	-	2	Parent=Os01t0138900-01
Chr01	irgsp1_rep	CDS	2075572	2075633	.	-	1	Parent=Os01t0138900-01
Chr01	irgsp1_rep	CDS	2075389	2075462	.	-	2	Parent=Os01t0138900-01
Chr01	irgsp1_rep	CDS	2075095	2075100	.	-	0	Parent=Os01t0138900-01
Chr01	irgsp1_rep	three_prime_UTR	2074795	2075094	.	-	.	Parent=Os01t0138900-01
Chr01	irgsp1_rep	mRNA	2080112	2081303	.	+	.	ID=Os01t0139000-00;Name=Os01t0139000-00;Locus_id=Os01g0139000;Note=Reticulon family protein.;Transcript_evidence=AK248206 (DDBJ);ORF_evidence=NP_001041975.1 (RefSeq);GO=Cellular Component: endoplasmic reticulum (GO:0005783);InterPro=Reticulon (IPR003388);TENOR=Os01t0139000-00;KEGG=Os01t0139000-00
Chr01	irgsp1_rep	CDS	2080112	2080196	.	+	0	Parent=Os01t0139000-00
Chr01	irgsp1_rep	CDS	2080334	2080514	.	+	2	Parent=Os01t0139000-00
Chr01	irgsp1_rep	CDS	2080712	2080853	.	+	1	Parent=Os01t0139000-00
Chr01	irgsp1_rep	CDS	2080934	2081003	.	+	0	Parent=Os01t0139000-00
Chr01	irgsp1_rep	CDS	2081140	2081303	.	+	2	Parent=Os01t0139000-00
Chr01	irgsp1_rep	mRNA	2084490	2087203	.	-	.	ID=Os01t0139200-01;Name=Os01t0139200-01;Locus_id=Os01g0139200;Note=Octicosapeptide/Phox/Bem1p domain containing protein.;Transcript_evidence=AK065080 (DDBJ%2C Best hit);ORF_evidence=A2WKG3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Phox/Bem1p (IPR000270);NIAS_FLcDNA=J013001L07;TENOR=Os01t0139200-01
Chr01	irgsp1_rep	five_prime_UTR	2087094	2087203	.	-	.	Parent=Os01t0139200-01
Chr01	irgsp1_rep	CDS	2085922	2087093	.	-	0	Parent=Os01t0139200-01
Chr01	irgsp1_rep	CDS	2084973	2085816	.	-	1	Parent=Os01t0139200-01
Chr01	irgsp1_rep	three_prime_UTR	2084490	2084972	.	-	.	Parent=Os01t0139200-01
Chr01	irgsp1_rep	mRNA	2084492	2087172	.	-	.	ID=Os01t0139200-02;Name=Os01t0139200-02;Locus_id=Os01g0139200;Note=Octicosapeptide/Phox/Bem1p domain containing protein.;Transcript_evidence=AK098852 (DDBJ%2C Best hit),AK098894 (DDBJ%2C Best hit),AK099060 (DDBJ%2C Best hit);ORF_evidence=A2WKG3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Phox/Bem1p (IPR000270);NIAS_FLcDNA=J013000H09,J013001N23,J013157I01;Expression=AK099060;TENOR=Os01t0139200-02;KEGG=Os01t0139200-02;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	2087094	2087172	.	-	.	Parent=Os01t0139200-02
Chr01	irgsp1_rep	CDS	2085922	2087093	.	-	0	Parent=Os01t0139200-02
Chr01	irgsp1_rep	CDS	2084973	2085816	.	-	1	Parent=Os01t0139200-02
Chr01	irgsp1_rep	three_prime_UTR	2084492	2084972	.	-	.	Parent=Os01t0139200-02
Chr01	irgsp1_rep	mRNA	2084490	2086148	.	-	.	ID=Os01t0139200-03;Name=Os01t0139200-03;Locus_id=Os01g0139200;Note=Conserved hypothetical protein.;Transcript_evidence=AK070687 (DDBJ%2C Best hit);ORF_evidence=A2WKG3 (UniProt);NIAS_FLcDNA=J023061K13;TENOR=Os01t0139200-03
Chr01	irgsp1_rep	CDS	2085922	2086148	.	-	0	Parent=Os01t0139200-03
Chr01	irgsp1_rep	CDS	2084973	2085816	.	-	1	Parent=Os01t0139200-03
Chr01	irgsp1_rep	three_prime_UTR	2084490	2084972	.	-	.	Parent=Os01t0139200-03
Chr01	irgsp1_rep	mRNA	2097192	2100692	.	+	.	ID=Os01t0139600-01;Name=Os01t0139600-01;Locus_id=Os01g0139600;Note=Similar to Lipid phosphate phosphatase 2 (EC 3.1.3.-) (AtLPP2) (Phosphatidic acid phosphatase 2) (AtPAP2) (Prenyl diphosphate phosphatase).;Transcript_evidence=AK073130 (DDBJ%2C Best hit);ORF_evidence=B4FH50 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824);InterPro=Phosphatidic acid phosphatase type 2/haloperoxidase (IPR000326),Phosphatidic acid phosphatase/chloroperoxidase%2C N-terminal (IPR016118);NIAS_FLcDNA=J033011L13;Expression=AK073130;TENOR=Os01t0139600-01;KEGG=Os01t0139600-01
Chr01	irgsp1_rep	five_prime_UTR	2097192	2097372	.	+	.	Parent=Os01t0139600-01
Chr01	irgsp1_rep	five_prime_UTR	2097526	2097676	.	+	.	Parent=Os01t0139600-01
Chr01	irgsp1_rep	CDS	2097677	2097694	.	+	0	Parent=Os01t0139600-01
Chr01	irgsp1_rep	CDS	2098576	2098797	.	+	0	Parent=Os01t0139600-01
Chr01	irgsp1_rep	CDS	2098889	2098976	.	+	0	Parent=Os01t0139600-01
Chr01	irgsp1_rep	CDS	2099080	2099189	.	+	2	Parent=Os01t0139600-01
Chr01	irgsp1_rep	CDS	2099299	2099392	.	+	0	Parent=Os01t0139600-01
Chr01	irgsp1_rep	CDS	2099786	2099974	.	+	2	Parent=Os01t0139600-01
Chr01	irgsp1_rep	CDS	2100061	2100120	.	+	2	Parent=Os01t0139600-01
Chr01	irgsp1_rep	CDS	2100231	2100391	.	+	2	Parent=Os01t0139600-01
Chr01	irgsp1_rep	three_prime_UTR	2100392	2100692	.	+	.	Parent=Os01t0139600-01
Chr01	irgsp1_rep	mRNA	2102113	2102672	.	-	.	ID=Os01t0139700-01;Name=Os01t0139700-01;Locus_id=Os01g0139700;Note=Conserved hypothetical protein.;Transcript_evidence=AK241178 (DDBJ%2C Best hit);ORF_evidence=NP_001172170.1 (RefSeq);NIAS_FLcDNA=J065118K13;TENOR=Os01t0139700-01;KEGG=Os01t0139700-01
Chr01	irgsp1_rep	five_prime_UTR	2102601	2102672	.	-	.	Parent=Os01t0139700-01
Chr01	irgsp1_rep	CDS	2102298	2102600	.	-	0	Parent=Os01t0139700-01
Chr01	irgsp1_rep	three_prime_UTR	2102113	2102297	.	-	.	Parent=Os01t0139700-01
Chr01	irgsp1_rep	mRNA	2108961	2109677	.	-	.	ID=Os01t0139900-01;Name=Os01t0139900-01;Locus_id=Os01g0139900;Note=Conserved hypothetical protein.;Transcript_evidence=AK121677 (DDBJ%2C Best hit);ORF_evidence=B8AD59 (UniProt);NIAS_FLcDNA=J033069D19;Expression=AK121677;TENOR=Os01t0139900-01;KEGG=Os01t0139900-01
Chr01	irgsp1_rep	five_prime_UTR	2109636	2109677	.	-	.	Parent=Os01t0139900-01
Chr01	irgsp1_rep	CDS	2109378	2109635	.	-	0	Parent=Os01t0139900-01
Chr01	irgsp1_rep	three_prime_UTR	2108961	2109377	.	-	.	Parent=Os01t0139900-01
Chr01	irgsp1_rep	mRNA	2120489	2122320	.	+	.	ID=Os01t0140100-01;Name=Os01t0140100-01;Locus_id=Os01g0140100;Note=Peptidase A1 domain containing protein.;Transcript_evidence=AK068990 (DDBJ%2C Best hit);ORF_evidence=XP_002890686.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J013170M01;Expression=AK068990;TENOR=Os01t0140100-01;KEGG=Os01t0140100-01
Chr01	irgsp1_rep	five_prime_UTR	2120489	2120518	.	+	.	Parent=Os01t0140100-01
Chr01	irgsp1_rep	CDS	2120519	2122033	.	+	0	Parent=Os01t0140100-01
Chr01	irgsp1_rep	three_prime_UTR	2122034	2122320	.	+	.	Parent=Os01t0140100-01
Chr01	irgsp1_rep	mRNA	2131013	2137291	.	+	.	ID=Os01t0140400-01;Name=Os01t0140400-01;Locus_id=Os01g0140400;Oryzabase Gene Symbol Synonym(s)=PLRRP;Oryzabase Gene Name Synonym(s)=putative leucine rich repeat protein;Note=Similar to leucine-rich repeat protein-related.;Transcript_evidence=AK103044 (DDBJ%2C Best hit);ORF_evidence=NP_564237.2 (RefSeq);InterPro=Malectin-like carbohydrate-binding domain (IPR024788);NIAS_FLcDNA=J033117F21;Oryzabase=16257;Expression=AK103044;TENOR=Os01t0140400-01;KEGG=Os01t0140400-01
Chr01	irgsp1_rep	five_prime_UTR	2131013	2131486	.	+	.	Parent=Os01t0140400-01
Chr01	irgsp1_rep	CDS	2131487	2131574	.	+	0	Parent=Os01t0140400-01
Chr01	irgsp1_rep	CDS	2131674	2132744	.	+	2	Parent=Os01t0140400-01
Chr01	irgsp1_rep	CDS	2132847	2132991	.	+	2	Parent=Os01t0140400-01
Chr01	irgsp1_rep	CDS	2133873	2133948	.	+	1	Parent=Os01t0140400-01
Chr01	irgsp1_rep	three_prime_UTR	2133949	2134398	.	+	.	Parent=Os01t0140400-01
Chr01	irgsp1_rep	three_prime_UTR	2135173	2135241	.	+	.	Parent=Os01t0140400-01
Chr01	irgsp1_rep	three_prime_UTR	2135322	2135399	.	+	.	Parent=Os01t0140400-01
Chr01	irgsp1_rep	three_prime_UTR	2136108	2137291	.	+	.	Parent=Os01t0140400-01
Chr01	irgsp1_rep	mRNA	2131433	2137293	.	+	.	ID=Os01t0140400-02;Name=Os01t0140400-02;Locus_id=Os01g0140400;Oryzabase Gene Symbol Synonym(s)=PLRRP;Oryzabase Gene Name Synonym(s)=putative leucine rich repeat protein;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=AK063999 (DDBJ%2C Best hit);ORF_evidence=B7EU05 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Malectin-like carbohydrate-binding domain (IPR024788);NIAS_FLcDNA=001-124-F06;Oryzabase=16257;Expression=AK063999;TENOR=Os01t0140400-02;KEGG=Os01t0140400-02
Chr01	irgsp1_rep	five_prime_UTR	2131433	2131486	.	+	.	Parent=Os01t0140400-02
Chr01	irgsp1_rep	CDS	2131487	2131574	.	+	0	Parent=Os01t0140400-02
Chr01	irgsp1_rep	CDS	2131674	2132744	.	+	2	Parent=Os01t0140400-02
Chr01	irgsp1_rep	CDS	2132847	2132991	.	+	2	Parent=Os01t0140400-02
Chr01	irgsp1_rep	CDS	2133873	2133944	.	+	1	Parent=Os01t0140400-02
Chr01	irgsp1_rep	CDS	2134330	2134398	.	+	1	Parent=Os01t0140400-02
Chr01	irgsp1_rep	CDS	2135173	2135241	.	+	1	Parent=Os01t0140400-02
Chr01	irgsp1_rep	CDS	2135322	2135399	.	+	1	Parent=Os01t0140400-02
Chr01	irgsp1_rep	CDS	2136108	2136316	.	+	1	Parent=Os01t0140400-02
Chr01	irgsp1_rep	CDS	2136652	2136767	.	+	2	Parent=Os01t0140400-02
Chr01	irgsp1_rep	three_prime_UTR	2136768	2137293	.	+	.	Parent=Os01t0140400-02
Chr01	irgsp1_rep	mRNA	2137800	2138539	.	+	.	ID=Os01t0140500-01;Name=Os01t0140500-01;Locus_id=Os01g0140500;CGSNL Gene Symbol=RPL26;CGSNL Gene Name=RIBOSOMAL PROTEIN L26;Oryzabase Gene Symbol Synonym(s)=RPL24b%2C OsRPL26%2C OsRPL24b;Oryzabase Gene Name Synonym(s)=Ribosomal protein L26%2C Ribosomal protein L24b;Note=Similar to 60S ribosomal protein L26B.;Transcript_evidence=AK058868 (DDBJ%2C Best hit);ORF_evidence=B6TPG2 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: large ribosomal subunit (GO:0015934),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L26/L24P%2C eukaryotic/archaeal (IPR005756),Translation protein SH3-like (IPR008991),Ribosomal protein L24%2C SH3-like (IPR014723);NIAS_FLcDNA=001-006-A11;Oryzabase=17750;Expression=AK058868;TENOR=Os01t0140500-01;KEGG=Os01t0140500-01
Chr01	irgsp1_rep	five_prime_UTR	2137800	2137857	.	+	.	Parent=Os01t0140500-01
Chr01	irgsp1_rep	CDS	2137858	2138045	.	+	0	Parent=Os01t0140500-01
Chr01	irgsp1_rep	CDS	2138287	2138488	.	+	1	Parent=Os01t0140500-01
Chr01	irgsp1_rep	three_prime_UTR	2138489	2138539	.	+	.	Parent=Os01t0140500-01
Chr01	irgsp1_rep	mRNA	2154326	2155994	.	+	.	ID=Os01t0140700-01;Name=Os01t0140700-01;Locus_id=Os01g0140700;RAP-DB Gene Symbol Synonym(s)=OsRAV8;RAP-DB Gene Name Synonym(s)=RELATED TO ABI3 AND VP1 8;CGSNL Gene Symbol=AP2/EREBP77;CGSNL Gene Name=APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 77;Oryzabase Gene Symbol Synonym(s)=AP2/EREBP#077%2C OsRAV1%2C RAV1%2C OsRAV8%2C RAV8;Oryzabase Gene Name Synonym(s)=APETALA2/ethylene-responsive element binding protein 77%2C related to ABI3/VP1-1%2C RAV subfamily member 1;Note=RAV family protein%2C Negative regulation of the transition from vegetative to reproductive phase%2C Maintenance of the vegetative state of the apical meristem;Transcript_evidence=Inferred from literature;ORF_evidence=Q9AWS7;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-binding transcription factor activity (GO:0003700);InterPro=DNA-binding domain superfamily (IPR016177),AP2/ERF domain superfamily (IPR036955),DNA-binding pseudobarrel domain superfamily (IPR015300),AP2/ERF domain (IPR001471),B3 DNA binding domain (IPR003340);Manual Curation=June 23%2C 2020;Literature_PMID=32554473;Oryzabase=10642;TENOR=Os01t0140700-00
Chr01	irgsp1_rep	CDS	2154326	2155279	.	+	0	Parent=Os01t0140700-01
Chr01	irgsp1_rep	three_prime_UTR	2155280	2155994	.	+	.	Parent=Os01t0140700-01
Chr01	irgsp1_rep	mRNA	2202278	2203787	.	+	.	ID=Os01t0141000-01;Name=Os01t0141000-01;Locus_id=Os01g0141000;RAP-DB Gene Symbol Synonym(s)=AP2/EREBP129%2C AP2/EREBP#129%2C OsRAV2%2C RAV2%2C OsRAV9%2C OsTEM1%2C OsRAV9/OsTEM1;RAP-DB Gene Name Synonym(s)=APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 129%2C APETALA2/ethylene-responsive element binding protein 129%2C related to ABI3/VP1-2%2C RAV subfamily member 2%2C RELATED TO ABI3 AND VP1 9%2C TEM-PRANILLO1;CGSNL Gene Symbol=AP2/EREBP129;CGSNL Gene Name=APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 129;Oryzabase Gene Symbol Synonym(s)=AP2/EREBP#129%2C OsRAV2%2C RAV2%2C OsRAV9/OsTEM1%2C OsRAV9/OsTEM1%2C OsRAV9%2C OsTEM1%2C RAV9%2C TEM1;Oryzabase Gene Name Synonym(s)=APETALA2/ethylene-responsive element binding protein 129%2C related to ABI3/VP1-2%2C RAV subfamily member 2%2C TEMPRANILLO1;Note=AP2/ERF and B3 domain-containing protein%2C RAV family protein%2C Salt stress response%2C Repression of photoperiodic flowering;Transcript_evidence=AK065008;ORF_evidence=Q9AWS0;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700);InterPro=DNA-binding domain (IPR016177),AP2/ERF domain (IPR001471),DNA-binding pseudobarrel domain (IPR015300),B3 DNA binding domain (IPR003340);NIAS_FLcDNA=J013001E21;Manual Curation=June 23%2C 2020;Literature_PMID=32554473,22807623,26482477;Oryzabase=10643;TENOR=Os01t0141000-01;KEGG=Os01t0141000-01
Chr01	irgsp1_rep	five_prime_UTR	2202278	2202403	.	+	.	Parent=Os01t0141000-01
Chr01	irgsp1_rep	CDS	2202404	2203501	.	+	0	Parent=Os01t0141000-01
Chr01	irgsp1_rep	three_prime_UTR	2203502	2203787	.	+	.	Parent=Os01t0141000-01
Chr01	irgsp1_rep	mRNA	2215662	2222812	.	-	.	ID=Os01t0141100-01;Name=Os01t0141100-01;Locus_id=Os01g0141100;Oryzabase Gene Symbol Synonym(s)=OsSKD1%2C SKD1;Note=Similar to Salt-induced AAA-Type ATPase.;Transcript_evidence=AK067644 (DDBJ%2C Best hit);ORF_evidence=B6T3Y2 (UniProt);InterPro=MIT (IPR007330);NIAS_FLcDNA=J013114F09;Oryzabase=21415;Expression=AK067644;TENOR=Os01t0141100-01;KEGG=Os01t0141100-01
Chr01	irgsp1_rep	five_prime_UTR	2222589	2222812	.	-	.	Parent=Os01t0141100-01
Chr01	irgsp1_rep	CDS	2222121	2222588	.	-	0	Parent=Os01t0141100-01
Chr01	irgsp1_rep	CDS	2221162	2221237	.	-	0	Parent=Os01t0141100-01
Chr01	irgsp1_rep	CDS	2217515	2217713	.	-	2	Parent=Os01t0141100-01
Chr01	irgsp1_rep	CDS	2216737	2216800	.	-	1	Parent=Os01t0141100-01
Chr01	irgsp1_rep	three_prime_UTR	2216732	2216736	.	-	.	Parent=Os01t0141100-01
Chr01	irgsp1_rep	three_prime_UTR	2216557	2216631	.	-	.	Parent=Os01t0141100-01
Chr01	irgsp1_rep	three_prime_UTR	2216371	2216469	.	-	.	Parent=Os01t0141100-01
Chr01	irgsp1_rep	three_prime_UTR	2216131	2216286	.	-	.	Parent=Os01t0141100-01
Chr01	irgsp1_rep	three_prime_UTR	2215662	2216048	.	-	.	Parent=Os01t0141100-01
Chr01	irgsp1_rep	mRNA	2215676	2222199	.	-	.	ID=Os01t0141100-02;Name=Os01t0141100-02;Locus_id=Os01g0141100;Oryzabase Gene Symbol Synonym(s)=OsSKD1%2C SKD1;Note=Similar to Vacuolar sorting protein 4b.;Transcript_evidence=AK062139 (DDBJ%2C Best hit);ORF_evidence=B6T3Y2 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960),Vps4 oligomerisation%2C C-terminal (IPR015415);NIAS_FLcDNA=001-045-F12;Oryzabase=21415;Expression=AK062139;TENOR=Os01t0141100-02;KEGG=Os01t0141100-02
Chr01	irgsp1_rep	five_prime_UTR	2222199	2222199	.	-	.	Parent=Os01t0141100-02
Chr01	irgsp1_rep	CDS	2222117	2222198	.	-	0	Parent=Os01t0141100-02
Chr01	irgsp1_rep	CDS	2221162	2221267	.	-	2	Parent=Os01t0141100-02
Chr01	irgsp1_rep	CDS	2217515	2217713	.	-	1	Parent=Os01t0141100-02
Chr01	irgsp1_rep	CDS	2216732	2216800	.	-	0	Parent=Os01t0141100-02
Chr01	irgsp1_rep	CDS	2216557	2216631	.	-	0	Parent=Os01t0141100-02
Chr01	irgsp1_rep	CDS	2216371	2216469	.	-	0	Parent=Os01t0141100-02
Chr01	irgsp1_rep	CDS	2216131	2216286	.	-	0	Parent=Os01t0141100-02
Chr01	irgsp1_rep	CDS	2215923	2216048	.	-	0	Parent=Os01t0141100-02
Chr01	irgsp1_rep	three_prime_UTR	2215676	2215922	.	-	.	Parent=Os01t0141100-02
Chr01	irgsp1_rep	mRNA	2216130	2222523	.	+	.	ID=Os01t0141150-00;Name=Os01t0141150-00;Locus_id=Os01g0141150;Note=Hypothetical gene.;Transcript_evidence=BT016886 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0141150-00
Chr01	irgsp1_rep	five_prime_UTR	2216130	2216288	.	+	.	Parent=Os01t0141150-00
Chr01	irgsp1_rep	five_prime_UTR	2216379	2216467	.	+	.	Parent=Os01t0141150-00
Chr01	irgsp1_rep	five_prime_UTR	2216555	2216606	.	+	.	Parent=Os01t0141150-00
Chr01	irgsp1_rep	five_prime_UTR	2216712	2216779	.	+	.	Parent=Os01t0141150-00
Chr01	irgsp1_rep	five_prime_UTR	2217491	2217697	.	+	.	Parent=Os01t0141150-00
Chr01	irgsp1_rep	five_prime_UTR	2221138	2221252	.	+	.	Parent=Os01t0141150-00
Chr01	irgsp1_rep	CDS	2221253	2221261	.	+	0	Parent=Os01t0141150-00
Chr01	irgsp1_rep	CDS	2222109	2222523	.	+	0	Parent=Os01t0141150-00
Chr01	irgsp1_rep	mRNA	2226409	2229526	.	-	.	ID=Os01t0141300-00;Name=Os01t0141300-00;Locus_id=Os01g0141300;Note=Similar to vacuolar sorting protein 4b.;Transcript_evidence=AF419850 (DDBJ);ORF_evidence=NP_001150145.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),MIT (IPR007330),Vps4 oligomerisation%2C C-terminal (IPR015415);TENOR=Os01t0141300-00;KEGG=Os01t0141300-00
Chr01	irgsp1_rep	CDS	2229118	2229526	.	-	0	Parent=Os01t0141300-00
Chr01	irgsp1_rep	CDS	2228492	2228597	.	-	2	Parent=Os01t0141300-00
Chr01	irgsp1_rep	CDS	2227917	2228115	.	-	1	Parent=Os01t0141300-00
Chr01	irgsp1_rep	CDS	2227682	2227750	.	-	0	Parent=Os01t0141300-00
Chr01	irgsp1_rep	CDS	2227489	2227563	.	-	0	Parent=Os01t0141300-00
Chr01	irgsp1_rep	CDS	2227276	2227374	.	-	0	Parent=Os01t0141300-00
Chr01	irgsp1_rep	CDS	2226817	2226972	.	-	0	Parent=Os01t0141300-00
Chr01	irgsp1_rep	CDS	2226409	2226732	.	-	0	Parent=Os01t0141300-00
Chr01	irgsp1_rep	mRNA	2226816	2229461	.	+	.	ID=Os01t0141450-00;Name=Os01t0141450-00;Locus_id=Os01g0141450;Note=Hypothetical gene.;Transcript_evidence=BT016886 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0141450-00;KEGG=Os01t0141450-00
Chr01	irgsp1_rep	five_prime_UTR	2226816	2226974	.	+	.	Parent=Os01t0141450-00
Chr01	irgsp1_rep	five_prime_UTR	2227284	2227368	.	+	.	Parent=Os01t0141450-00
Chr01	irgsp1_rep	five_prime_UTR	2227480	2227583	.	+	.	Parent=Os01t0141450-00
Chr01	irgsp1_rep	five_prime_UTR	2227869	2228099	.	+	.	Parent=Os01t0141450-00
Chr01	irgsp1_rep	five_prime_UTR	2228471	2228602	.	+	.	Parent=Os01t0141450-00
Chr01	irgsp1_rep	five_prime_UTR	2229074	2229149	.	+	.	Parent=Os01t0141450-00
Chr01	irgsp1_rep	CDS	2229150	2229434	.	+	0	Parent=Os01t0141450-00
Chr01	irgsp1_rep	three_prime_UTR	2229435	2229461	.	+	.	Parent=Os01t0141450-00
Chr01	irgsp1_rep	mRNA	2245732	2250435	.	+	.	ID=Os01t0141600-01;Name=Os01t0141600-01;Locus_id=Os01g0141600;CGSNL Gene Symbol=RUS5;CGSNL Gene Name=ROOT UV-B SENSITIVE 5;Oryzabase Gene Symbol Synonym(s)=OsRUS5;Note=Protein of unknown function DUF647 family protein.;Transcript_evidence=AK066922 (DDBJ%2C Best hit);ORF_evidence=XP_002457390.1 (RefSeq);InterPro=Protein of unknown function DUF647 (IPR006968);NIAS_FLcDNA=J013090N09;Oryzabase=21450;Expression=AK066922;TENOR=Os01t0141600-01;KEGG=Os01t0141600-01
Chr01	irgsp1_rep	five_prime_UTR	2245732	2245776	.	+	.	Parent=Os01t0141600-01
Chr01	irgsp1_rep	CDS	2245777	2245916	.	+	0	Parent=Os01t0141600-01
Chr01	irgsp1_rep	CDS	2246011	2246061	.	+	1	Parent=Os01t0141600-01
Chr01	irgsp1_rep	CDS	2246174	2246322	.	+	1	Parent=Os01t0141600-01
Chr01	irgsp1_rep	CDS	2246870	2246970	.	+	2	Parent=Os01t0141600-01
Chr01	irgsp1_rep	CDS	2247327	2247385	.	+	0	Parent=Os01t0141600-01
Chr01	irgsp1_rep	CDS	2247763	2247809	.	+	1	Parent=Os01t0141600-01
Chr01	irgsp1_rep	CDS	2247952	2248030	.	+	2	Parent=Os01t0141600-01
Chr01	irgsp1_rep	CDS	2248139	2248211	.	+	1	Parent=Os01t0141600-01
Chr01	irgsp1_rep	CDS	2248324	2248413	.	+	0	Parent=Os01t0141600-01
Chr01	irgsp1_rep	CDS	2248685	2248744	.	+	0	Parent=Os01t0141600-01
Chr01	irgsp1_rep	CDS	2248881	2248999	.	+	0	Parent=Os01t0141600-01
Chr01	irgsp1_rep	CDS	2249128	2249131	.	+	1	Parent=Os01t0141600-01
Chr01	irgsp1_rep	three_prime_UTR	2249132	2249188	.	+	.	Parent=Os01t0141600-01
Chr01	irgsp1_rep	three_prime_UTR	2249276	2249394	.	+	.	Parent=Os01t0141600-01
Chr01	irgsp1_rep	three_prime_UTR	2249921	2250016	.	+	.	Parent=Os01t0141600-01
Chr01	irgsp1_rep	three_prime_UTR	2250094	2250435	.	+	.	Parent=Os01t0141600-01
Chr01	irgsp1_rep	mRNA	2250838	2255073	.	-	.	ID=Os01t0141700-01;Name=Os01t0141700-01;Locus_id=Os01g0141700;Oryzabase Gene Symbol Synonym(s)=OsWD40-2%2C UV-DDB2%2C OsUV-DDB2;Oryzabase Gene Name Synonym(s)=UV-damaged DNA binding protein 2%2C Ultraviolet-damaged DNA binding protein 2;Note=Similar to predicted protein.;Transcript_evidence=AK112097 (DDBJ%2C Best hit),AK111907 (DDBJ%2C Best hit);ORF_evidence=XP_002866290.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=WD40 repeat (IPR001680),Zinc finger%2C CCHC-type (IPR001878),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=002-108-A04,J033061E05;Oryzabase=10683;TENOR=Os01t0141700-01
Chr01	irgsp1_rep	five_prime_UTR	2255001	2255073	.	-	.	Parent=Os01t0141700-01
Chr01	irgsp1_rep	CDS	2254701	2255000	.	-	0	Parent=Os01t0141700-01
Chr01	irgsp1_rep	CDS	2254057	2254147	.	-	0	Parent=Os01t0141700-01
Chr01	irgsp1_rep	CDS	2253379	2253506	.	-	2	Parent=Os01t0141700-01
Chr01	irgsp1_rep	CDS	2253149	2253271	.	-	0	Parent=Os01t0141700-01
Chr01	irgsp1_rep	CDS	2252940	2253028	.	-	0	Parent=Os01t0141700-01
Chr01	irgsp1_rep	CDS	2252735	2252855	.	-	1	Parent=Os01t0141700-01
Chr01	irgsp1_rep	CDS	2252473	2252564	.	-	0	Parent=Os01t0141700-01
Chr01	irgsp1_rep	CDS	2252047	2252176	.	-	1	Parent=Os01t0141700-01
Chr01	irgsp1_rep	CDS	2251707	2251955	.	-	0	Parent=Os01t0141700-01
Chr01	irgsp1_rep	CDS	2251419	2251615	.	-	0	Parent=Os01t0141700-01
Chr01	irgsp1_rep	CDS	2251104	2251335	.	-	1	Parent=Os01t0141700-01
Chr01	irgsp1_rep	three_prime_UTR	2250838	2251103	.	-	.	Parent=Os01t0141700-01
Chr01	irgsp1_rep	mRNA	2261501	2266230	.	+	.	ID=Os01t0141900-01;Name=Os01t0141900-01;Locus_id=Os01g0141900;Note=Conserved hypothetical protein.;Transcript_evidence=AK070848 (DDBJ%2C Best hit);ORF_evidence=Q5ZEN5 (UniProt);NIAS_FLcDNA=J023068G12;Expression=AK070848;TENOR=Os01t0141900-01;KEGG=Os01t0141900-01
Chr01	irgsp1_rep	five_prime_UTR	2261501	2261730	.	+	.	Parent=Os01t0141900-01
Chr01	irgsp1_rep	CDS	2261731	2261989	.	+	0	Parent=Os01t0141900-01
Chr01	irgsp1_rep	CDS	2262111	2262216	.	+	2	Parent=Os01t0141900-01
Chr01	irgsp1_rep	CDS	2263746	2263857	.	+	1	Parent=Os01t0141900-01
Chr01	irgsp1_rep	CDS	2264296	2265396	.	+	0	Parent=Os01t0141900-01
Chr01	irgsp1_rep	CDS	2265483	2265725	.	+	0	Parent=Os01t0141900-01
Chr01	irgsp1_rep	three_prime_UTR	2265726	2266230	.	+	.	Parent=Os01t0141900-01
Chr01	irgsp1_rep	mRNA	2266281	2271051	.	-	.	ID=Os01t0142100-01;Name=Os01t0142100-01;Locus_id=Os01g0142100;Note=Peptidase M50 family protein.;Transcript_evidence=AK065031 (DDBJ%2C Best hit);ORF_evidence=B6UCS1 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: metalloendopeptidase activity (GO:0004222);InterPro=Peptidase M50 (IPR008915);NIAS_FLcDNA=J013001G24;Expression=AK065031;TENOR=Os01t0142100-01;KEGG=Os01t0142100-01
Chr01	irgsp1_rep	five_prime_UTR	2271008	2271051	.	-	.	Parent=Os01t0142100-01
Chr01	irgsp1_rep	CDS	2270844	2271007	.	-	0	Parent=Os01t0142100-01
Chr01	irgsp1_rep	CDS	2270682	2270754	.	-	1	Parent=Os01t0142100-01
Chr01	irgsp1_rep	CDS	2270111	2270206	.	-	0	Parent=Os01t0142100-01
Chr01	irgsp1_rep	CDS	2269818	2269910	.	-	0	Parent=Os01t0142100-01
Chr01	irgsp1_rep	CDS	2269672	2269725	.	-	0	Parent=Os01t0142100-01
Chr01	irgsp1_rep	CDS	2269336	2269443	.	-	0	Parent=Os01t0142100-01
Chr01	irgsp1_rep	CDS	2269001	2269075	.	-	0	Parent=Os01t0142100-01
Chr01	irgsp1_rep	CDS	2268814	2268919	.	-	0	Parent=Os01t0142100-01
Chr01	irgsp1_rep	CDS	2268557	2268650	.	-	2	Parent=Os01t0142100-01
Chr01	irgsp1_rep	CDS	2267959	2268112	.	-	1	Parent=Os01t0142100-01
Chr01	irgsp1_rep	CDS	2267381	2267588	.	-	0	Parent=Os01t0142100-01
Chr01	irgsp1_rep	CDS	2267044	2267204	.	-	2	Parent=Os01t0142100-01
Chr01	irgsp1_rep	CDS	2266650	2266904	.	-	0	Parent=Os01t0142100-01
Chr01	irgsp1_rep	three_prime_UTR	2266281	2266649	.	-	.	Parent=Os01t0142100-01
Chr01	irgsp1_rep	mRNA	2266353	2268842	.	-	.	ID=Os01t0142100-02;Name=Os01t0142100-02;Locus_id=Os01g0142100;Note=Similar to Metalloendopeptidase.;Transcript_evidence=AK062266 (DDBJ%2C Best hit);ORF_evidence=B6UCS1 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: metalloendopeptidase activity (GO:0004222);InterPro=Peptidase M50 (IPR008915);NIAS_FLcDNA=001-047-H11;Expression=AK062266;TENOR=Os01t0142100-02;KEGG=Os01t0142100-02
Chr01	irgsp1_rep	five_prime_UTR	2268842	2268842	.	-	.	Parent=Os01t0142100-02
Chr01	irgsp1_rep	CDS	2268814	2268841	.	-	0	Parent=Os01t0142100-02
Chr01	irgsp1_rep	CDS	2268557	2268650	.	-	2	Parent=Os01t0142100-02
Chr01	irgsp1_rep	CDS	2267959	2268112	.	-	1	Parent=Os01t0142100-02
Chr01	irgsp1_rep	CDS	2267381	2267588	.	-	0	Parent=Os01t0142100-02
Chr01	irgsp1_rep	CDS	2267044	2267204	.	-	2	Parent=Os01t0142100-02
Chr01	irgsp1_rep	CDS	2266650	2266904	.	-	0	Parent=Os01t0142100-02
Chr01	irgsp1_rep	three_prime_UTR	2266353	2266649	.	-	.	Parent=Os01t0142100-02
Chr01	irgsp1_rep	mRNA	2271163	2273724	.	+	.	ID=Os01t0142200-01;Name=Os01t0142200-01;Locus_id=Os01g0142200;Note=Kinase binding protein CGI-121 domain containing protein.;Transcript_evidence=AK103082 (DDBJ%2C Best hit),AK109417 (DDBJ%2C Best hit);ORF_evidence=B6TUM9 (UniProt);InterPro=Kinase binding protein CGI-121 (IPR013926);NIAS_FLcDNA=J033118F12,006-304-G04;TENOR=Os01t0142200-01
Chr01	irgsp1_rep	five_prime_UTR	2271163	2271243	.	+	.	Parent=Os01t0142200-01
Chr01	irgsp1_rep	CDS	2271244	2271314	.	+	0	Parent=Os01t0142200-01
Chr01	irgsp1_rep	CDS	2271437	2271503	.	+	1	Parent=Os01t0142200-01
Chr01	irgsp1_rep	CDS	2271613	2271735	.	+	0	Parent=Os01t0142200-01
Chr01	irgsp1_rep	CDS	2271844	2271927	.	+	0	Parent=Os01t0142200-01
Chr01	irgsp1_rep	CDS	2272733	2272819	.	+	0	Parent=Os01t0142200-01
Chr01	irgsp1_rep	CDS	2272913	2272999	.	+	0	Parent=Os01t0142200-01
Chr01	irgsp1_rep	three_prime_UTR	2273000	2273000	.	+	.	Parent=Os01t0142200-01
Chr01	irgsp1_rep	three_prime_UTR	2273302	2273724	.	+	.	Parent=Os01t0142200-01
Chr01	irgsp1_rep	mRNA	2275239	2278757	.	+	.	ID=Os01t0142300-01;Name=Os01t0142300-01;Locus_id=Os01g0142300;CGSNL Gene Symbol=SQD2.2;CGSNL Gene Name=SULFOQUINOVOSYLDIACYLGLYCEROL SYNTHASE 2.2;Oryzabase Gene Symbol Synonym(s)=OsSQD2%2C SQD2%2C OsSQD2.2;Oryzabase Gene Name Synonym(s)=sulfoquinovosyldiacylglycerol 2%2C sulfoquinovosyl transferase-like protein 2.2%2C Sulfoquinovosyldiacylglycerol synthase 2.2;Note=Glycosyl transferase%2C group 1 domain containing protein.;Transcript_evidence=AK072289 (DDBJ%2C Best hit);ORF_evidence=NP_568085.2 (RefSeq);GO=Biological Process: biosynthetic process (GO:0009058);InterPro=Glycosyl transferase%2C family 1 (IPR001296);NIAS_FLcDNA=J023016G12;Oryzabase=9627;Expression=AK072289;TENOR=Os01t0142300-01;KEGG=Os01t0142300-01
Chr01	irgsp1_rep	five_prime_UTR	2275239	2275352	.	+	.	Parent=Os01t0142300-01
Chr01	irgsp1_rep	CDS	2275353	2275465	.	+	0	Parent=Os01t0142300-01
Chr01	irgsp1_rep	CDS	2275889	2275955	.	+	1	Parent=Os01t0142300-01
Chr01	irgsp1_rep	CDS	2276040	2276110	.	+	0	Parent=Os01t0142300-01
Chr01	irgsp1_rep	CDS	2276550	2276667	.	+	1	Parent=Os01t0142300-01
Chr01	irgsp1_rep	CDS	2276755	2276828	.	+	0	Parent=Os01t0142300-01
Chr01	irgsp1_rep	CDS	2277094	2277149	.	+	1	Parent=Os01t0142300-01
Chr01	irgsp1_rep	CDS	2277237	2277320	.	+	2	Parent=Os01t0142300-01
Chr01	irgsp1_rep	CDS	2277422	2277509	.	+	2	Parent=Os01t0142300-01
Chr01	irgsp1_rep	CDS	2277602	2277679	.	+	1	Parent=Os01t0142300-01
Chr01	irgsp1_rep	CDS	2277814	2277870	.	+	1	Parent=Os01t0142300-01
Chr01	irgsp1_rep	CDS	2278074	2278578	.	+	1	Parent=Os01t0142300-01
Chr01	irgsp1_rep	three_prime_UTR	2278579	2278757	.	+	.	Parent=Os01t0142300-01
Chr01	irgsp1_rep	mRNA	2275313	2278860	.	+	.	ID=Os01t0142300-02;Name=Os01t0142300-02;Locus_id=Os01g0142300;CGSNL Gene Symbol=SQD2.2;CGSNL Gene Name=SULFOQUINOVOSYLDIACYLGLYCEROL SYNTHASE 2.2;Oryzabase Gene Symbol Synonym(s)=OsSQD2%2C SQD2%2C OsSQD2.2;Oryzabase Gene Name Synonym(s)=sulfoquinovosyldiacylglycerol 2%2C sulfoquinovosyl transferase-like protein 2.2%2C Sulfoquinovosyldiacylglycerol synthase 2.2;Note=Glycosyl transferase%2C group 1 domain containing protein.;Transcript_evidence=AK060202 (DDBJ%2C Best hit);ORF_evidence=NP_568085.2 (RefSeq);GO=Biological Process: biosynthetic process (GO:0009058);InterPro=Glycosyl transferase%2C family 1 (IPR001296);NIAS_FLcDNA=001-001-G08;Oryzabase=9627;Expression=AK060202;TENOR=Os01t0142300-02;KEGG=Os01t0142300-02
Chr01	irgsp1_rep	five_prime_UTR	2275313	2275352	.	+	.	Parent=Os01t0142300-02
Chr01	irgsp1_rep	CDS	2275353	2275465	.	+	0	Parent=Os01t0142300-02
Chr01	irgsp1_rep	CDS	2275889	2275955	.	+	1	Parent=Os01t0142300-02
Chr01	irgsp1_rep	CDS	2276040	2276110	.	+	0	Parent=Os01t0142300-02
Chr01	irgsp1_rep	CDS	2276550	2276667	.	+	1	Parent=Os01t0142300-02
Chr01	irgsp1_rep	CDS	2276755	2276828	.	+	0	Parent=Os01t0142300-02
Chr01	irgsp1_rep	CDS	2277094	2277149	.	+	1	Parent=Os01t0142300-02
Chr01	irgsp1_rep	CDS	2277237	2277320	.	+	2	Parent=Os01t0142300-02
Chr01	irgsp1_rep	CDS	2277422	2277509	.	+	2	Parent=Os01t0142300-02
Chr01	irgsp1_rep	CDS	2277602	2277679	.	+	1	Parent=Os01t0142300-02
Chr01	irgsp1_rep	CDS	2277814	2277870	.	+	1	Parent=Os01t0142300-02
Chr01	irgsp1_rep	CDS	2278074	2278578	.	+	1	Parent=Os01t0142300-02
Chr01	irgsp1_rep	three_prime_UTR	2278579	2278860	.	+	.	Parent=Os01t0142300-02
Chr01	irgsp1_rep	mRNA	2275067	2278872	.	+	.	ID=Os01t0142300-03;Name=Os01t0142300-03;Locus_id=Os01g0142300;RAP-DB Gene Symbol Synonym(s)=SQD2.2%2C OsSQD2.2;RAP-DB Gene Name Synonym(s)=sulfoquinovosyl transferase-like protein 2.2;CGSNL Gene Symbol=SQD2.2;CGSNL Gene Name=SULFOQUINOVOSYLDIACYLGLYCEROL SYNTHASE 2.2;Oryzabase Gene Symbol Synonym(s)=OsSQD2%2C SQD2%2C OsSQD2.2;Oryzabase Gene Name Synonym(s)=sulfoquinovosyldiacylglycerol 2%2C sulfoquinovosyl transferase-like protein 2.2%2C Sulfoquinovosyldiacylglycerol synthase 2.2;Note=Sulfoquinovosyltransferase-like enzyme%2C Flavonoid glycosylation%2C Regulation of sugar metabolism and seed setting;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;InterPro=Glycosyltransferase subfamily 4-like%2C N-terminal domain (IPR028098),Glycosyl transferase%2C family 1 (IPR001296);Manual Curation=May 22%2C 2018;Literature_PMID=28680100;Oryzabase=9627;Subcellular location=cytoplasm (GO:0005737)
Chr01	irgsp1_rep	five_prime_UTR	2275067	2275118	.	+	.	Parent=Os01t0142300-03
Chr01	irgsp1_rep	CDS	2275119	2275465	.	+	0	Parent=Os01t0142300-03
Chr01	irgsp1_rep	CDS	2275889	2275955	.	+	1	Parent=Os01t0142300-03
Chr01	irgsp1_rep	CDS	2276040	2276110	.	+	0	Parent=Os01t0142300-03
Chr01	irgsp1_rep	CDS	2276550	2276667	.	+	1	Parent=Os01t0142300-03
Chr01	irgsp1_rep	CDS	2276755	2276828	.	+	0	Parent=Os01t0142300-03
Chr01	irgsp1_rep	CDS	2277094	2277149	.	+	1	Parent=Os01t0142300-03
Chr01	irgsp1_rep	CDS	2277237	2277320	.	+	2	Parent=Os01t0142300-03
Chr01	irgsp1_rep	CDS	2277422	2277509	.	+	2	Parent=Os01t0142300-03
Chr01	irgsp1_rep	CDS	2277602	2277679	.	+	1	Parent=Os01t0142300-03
Chr01	irgsp1_rep	CDS	2277814	2277870	.	+	1	Parent=Os01t0142300-03
Chr01	irgsp1_rep	CDS	2278074	2278578	.	+	1	Parent=Os01t0142300-03
Chr01	irgsp1_rep	three_prime_UTR	2278579	2278872	.	+	.	Parent=Os01t0142300-03
Chr01	irgsp1_rep	mRNA	2279102	2279169	.	+	.	ID=Os01t0142400-00;Name=Os01t0142400-00;Locus_id=Os01g0142400;Note=Non-protein coding transcript.;Transcript_evidence=X06284 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0142400-00
Chr01	irgsp1_rep	exon	2279102	2279169	.	+	.	Parent=Os01t0142400-00
Chr01	irgsp1_rep	mRNA	2281913	2284775	.	-	.	ID=Os01t0142500-01;Name=Os01t0142500-01;Locus_id=Os01g0142500;Oryzabase Gene Name Synonym(s)=MYB transcription factor;Note=Homeodomain-like containing protein.;Transcript_evidence=AK067964 (DDBJ%2C Best hit);ORF_evidence=A5HJS5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),MYB-like (IPR017877),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J013124L02;Oryzabase=16193;Expression=AK067964;TENOR=Os01t0142500-01;KEGG=Os01t0142500-01
Chr01	irgsp1_rep	five_prime_UTR	2284546	2284775	.	-	.	Parent=Os01t0142500-01
Chr01	irgsp1_rep	five_prime_UTR	2283966	2284021	.	-	.	Parent=Os01t0142500-01
Chr01	irgsp1_rep	CDS	2283523	2283965	.	-	0	Parent=Os01t0142500-01
Chr01	irgsp1_rep	CDS	2282536	2282977	.	-	1	Parent=Os01t0142500-01
Chr01	irgsp1_rep	three_prime_UTR	2281913	2282535	.	-	.	Parent=Os01t0142500-01
Chr01	irgsp1_rep	mRNA	2292239	2294340	.	+	.	ID=Os01t0142600-01;Name=Os01t0142600-01;Locus_id=Os01g0142600;Note=Conserved hypothetical protein.;Transcript_evidence=AK119467 (DDBJ%2C Best hit);ORF_evidence=NP_001041993.1 (RefSeq);NIAS_FLcDNA=001-134-A04;TENOR=Os01t0142600-01;KEGG=Os01t0142600-01
Chr01	irgsp1_rep	five_prime_UTR	2292239	2293689	.	+	.	Parent=Os01t0142600-01
Chr01	irgsp1_rep	CDS	2293690	2293947	.	+	0	Parent=Os01t0142600-01
Chr01	irgsp1_rep	three_prime_UTR	2293948	2294340	.	+	.	Parent=Os01t0142600-01
Chr01	irgsp1_rep	mRNA	2294904	2298329	.	+	.	ID=Os01t0142800-01;Name=Os01t0142800-01;Locus_id=Os01g0142800;RAP-DB Gene Symbol Synonym(s)=OsNPF8.1%2C OsPTR7%2C PTR7;RAP-DB Gene Name Synonym(s)=PROTEIN TRANSPORTER 7%2C peptide transporter 7;CGSNL Gene Symbol=PTR7;CGSNL Gene Name=PROTEIN TRANSPORTER 7;Oryzabase Gene Symbol Synonym(s)=OsPTR7%2C OsNPF8.1%2C NPF8.1;Oryzabase Gene Name Synonym(s)=NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 8.1;Note=Putative peptide transporter%2C Long-distance translocation of dimethylarsinate to rice grain;Transcript_evidence=AK070036,AK105664;ORF_evidence=Q9FU86;GO=Biological Process: transport (GO:0006810),Biological Process: oligopeptide transport (GO:0006857),Molecular Function: transporter activity (GO:0005215),Cellular Component: membrane (GO:0016020);InterPro=Proton-dependent oligopeptide transporter family (IPR000109),Major facilitator superfamily domain (IPR020846),PTR2 family proton/oligopeptide symporter%2C conserved site (IPR018456);NIAS_FLcDNA=J023036E09, 001-200-H07;Manual Curation=April 6%2C 2017;Literature_PMID=28340032,DOI:10.1016/j.plantsci.2010.06.013;Oryzabase=8915;TENOR=Os01t0142800-01
Chr01	irgsp1_rep	five_prime_UTR	2294904	2295064	.	+	.	Parent=Os01t0142800-01
Chr01	irgsp1_rep	five_prime_UTR	2296000	2296042	.	+	.	Parent=Os01t0142800-01
Chr01	irgsp1_rep	CDS	2296043	2296154	.	+	0	Parent=Os01t0142800-01
Chr01	irgsp1_rep	CDS	2296258	2296475	.	+	2	Parent=Os01t0142800-01
Chr01	irgsp1_rep	CDS	2296558	2297970	.	+	0	Parent=Os01t0142800-01
Chr01	irgsp1_rep	three_prime_UTR	2297971	2298329	.	+	.	Parent=Os01t0142800-01
Chr01	irgsp1_rep	mRNA	2295007	2298095	.	+	.	ID=Os01t0142800-02;Name=Os01t0142800-02;Locus_id=Os01g0142800;CGSNL Gene Symbol=PTR7;CGSNL Gene Name=PROTEIN TRANSPORTER 7;Oryzabase Gene Symbol Synonym(s)=OsPTR7%2C OsNPF8.1%2C NPF8.1;Oryzabase Gene Name Synonym(s)=NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 8.1;Note=Similar to cDNA clone:J023036E09%2C full insert sequence (Fragment).;Transcript_evidence=AK102216 (DDBJ%2C Best hit);ORF_evidence=B7EH87 (UniProt);NIAS_FLcDNA=J033087L04;Oryzabase=8915;TENOR=Os01t0142800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	2295007	2296253	.	+	.	Parent=Os01t0142800-02
Chr01	irgsp1_rep	CDS	2296254	2298017	.	+	0	Parent=Os01t0142800-02
Chr01	irgsp1_rep	three_prime_UTR	2298018	2298095	.	+	.	Parent=Os01t0142800-02
Chr01	irgsp1_rep	mRNA	2295940	2298108	.	+	.	ID=Os01t0142800-03;Name=Os01t0142800-03;Locus_id=Os01g0142800;CGSNL Gene Symbol=PTR7;CGSNL Gene Name=PROTEIN TRANSPORTER 7;Oryzabase Gene Symbol Synonym(s)=OsPTR7%2C OsNPF8.1%2C NPF8.1;Oryzabase Gene Name Synonym(s)=NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 8.1;Note=Similar to Peptide transporter.;Transcript_evidence=AK058745 (DDBJ%2C Best hit);ORF_evidence=B7EH87 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),PTR2 family proton/oligopeptide symporter%2C conserved site (IPR018456);NIAS_FLcDNA=001-019-H02;Oryzabase=8915;Expression=AK058745;TENOR=Os01t0142800-03;KEGG=Os01t0142800-03
Chr01	irgsp1_rep	five_prime_UTR	2295940	2296042	.	+	.	Parent=Os01t0142800-03
Chr01	irgsp1_rep	CDS	2296043	2296154	.	+	0	Parent=Os01t0142800-03
Chr01	irgsp1_rep	CDS	2296258	2296475	.	+	2	Parent=Os01t0142800-03
Chr01	irgsp1_rep	CDS	2296558	2297970	.	+	0	Parent=Os01t0142800-03
Chr01	irgsp1_rep	three_prime_UTR	2297971	2298108	.	+	.	Parent=Os01t0142800-03
Chr01	irgsp1_rep	mRNA	2296049	2297950	.	-	.	ID=Os01t0142875-00;Name=Os01t0142875-00;Locus_id=Os01g0142875;Note=Hypothetical protein.;Transcript_evidence=tplb0038k08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0142875-00
Chr01	irgsp1_rep	five_prime_UTR	2297544	2297950	.	-	.	Parent=Os01t0142875-00
Chr01	irgsp1_rep	CDS	2296788	2297543	.	-	0	Parent=Os01t0142875-00
Chr01	irgsp1_rep	three_prime_UTR	2296575	2296787	.	-	.	Parent=Os01t0142875-00
Chr01	irgsp1_rep	three_prime_UTR	2296256	2296487	.	-	.	Parent=Os01t0142875-00
Chr01	irgsp1_rep	three_prime_UTR	2296049	2296152	.	-	.	Parent=Os01t0142875-00
Chr01	irgsp1_rep	mRNA	2338166	2342048	.	-	.	ID=Os01t0142950-01;Name=Os01t0142950-01;Locus_id=Os01g0142950;Note=Conserved hypothetical protein.;Transcript_evidence=AK288554 (DDBJ%2C Best hit);ORF_evidence=Q53LD5 (UniProt);NIAS_FLcDNA=J090047A03;TENOR=Os01t0142950-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	2339768	2342048	.	-	.	Parent=Os01t0142950-01
Chr01	irgsp1_rep	CDS	2339519	2339767	.	-	0	Parent=Os01t0142950-01
Chr01	irgsp1_rep	three_prime_UTR	2338166	2339518	.	-	.	Parent=Os01t0142950-01
Chr01	irgsp1_rep	mRNA	2350069	2353502	.	-	.	ID=Os01t0143100-01;Name=Os01t0143100-01;Locus_id=Os01g0143100;Note=Adenine nucleotide translocator 1 domain containing protein.;Transcript_evidence=AK072025 (DDBJ%2C Best hit),AK107219 (DDBJ%2C Best hit);ORF_evidence=B8AD76 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial inner membrane (GO:0005743),Molecular Function: binding (GO:0005488);InterPro=Mitochondrial carrier protein (IPR002067),Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J013104N14,002-125-D01;Expression=AK072025;TENOR=Os01t0143100-01;KEGG=Os01t0143100-01
Chr01	irgsp1_rep	five_prime_UTR	2353390	2353502	.	-	.	Parent=Os01t0143100-01
Chr01	irgsp1_rep	CDS	2353228	2353389	.	-	0	Parent=Os01t0143100-01
Chr01	irgsp1_rep	CDS	2351540	2351716	.	-	0	Parent=Os01t0143100-01
Chr01	irgsp1_rep	CDS	2351309	2351449	.	-	0	Parent=Os01t0143100-01
Chr01	irgsp1_rep	CDS	2351022	2351123	.	-	0	Parent=Os01t0143100-01
Chr01	irgsp1_rep	CDS	2350880	2350950	.	-	0	Parent=Os01t0143100-01
Chr01	irgsp1_rep	CDS	2350719	2350786	.	-	1	Parent=Os01t0143100-01
Chr01	irgsp1_rep	CDS	2350336	2350583	.	-	2	Parent=Os01t0143100-01
Chr01	irgsp1_rep	three_prime_UTR	2350069	2350335	.	-	.	Parent=Os01t0143100-01
Chr01	irgsp1_rep	mRNA	2357871	2360437	.	-	.	ID=Os01t0143300-01;Name=Os01t0143300-01;Locus_id=Os01g0143300;Note=Similar to Glycine-rich protein (Fragment).;Transcript_evidence=AK108438 (DDBJ%2C Best hit);ORF_evidence=NP_001152571.1 (RefSeq);GO=Cellular Component: mitochondrial matrix (GO:0005759);InterPro=Mitochondrial glycoprotein (IPR003428);NIAS_FLcDNA=002-143-B08;Expression=AK108438;TENOR=Os01t0143300-01;KEGG=Os01t0143300-01
Chr01	irgsp1_rep	five_prime_UTR	2360372	2360437	.	-	.	Parent=Os01t0143300-01
Chr01	irgsp1_rep	CDS	2360114	2360371	.	-	0	Parent=Os01t0143300-01
Chr01	irgsp1_rep	CDS	2358354	2358730	.	-	0	Parent=Os01t0143300-01
Chr01	irgsp1_rep	CDS	2358085	2358244	.	-	1	Parent=Os01t0143300-01
Chr01	irgsp1_rep	three_prime_UTR	2357871	2358084	.	-	.	Parent=Os01t0143300-01
Chr01	irgsp1_rep	mRNA	2358098	2360393	.	+	.	ID=Os01t0143350-00;Name=Os01t0143350-00;Locus_id=Os01g0143350;Note=Hypothetical gene.;Transcript_evidence=BT016884 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0143350-00;KEGG=Os01t0143350-00
Chr01	irgsp1_rep	five_prime_UTR	2358098	2358228	.	+	.	Parent=Os01t0143350-00
Chr01	irgsp1_rep	five_prime_UTR	2358339	2358712	.	+	.	Parent=Os01t0143350-00
Chr01	irgsp1_rep	five_prime_UTR	2360091	2360159	.	+	.	Parent=Os01t0143350-00
Chr01	irgsp1_rep	CDS	2360160	2360393	.	+	0	Parent=Os01t0143350-00
Chr01	irgsp1_rep	mRNA	2361799	2363814	.	-	.	ID=Os01t0143400-00;Name=Os01t0143400-00;Locus_id=Os01g0143400;Note=Protein of unknown function DUF594 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001041997.1 (RefSeq);InterPro=Protein of unknown function DUF594 (IPR007658);TENOR=Os01t0143400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	2361799	2363814	.	-	0	Parent=Os01t0143400-00
Chr01	irgsp1_rep	mRNA	2372323	2374066	.	-	.	ID=Os01t0143700-00;Name=Os01t0143700-00;Locus_id=Os01g0143700;Note=Similar to Mitochondrial glycoprotein.;Transcript_evidence=ab initio prediction;ORF_evidence=B4FZA1 (UniProt);GO=Cellular Component: mitochondrial matrix (GO:0005759);InterPro=Mitochondrial glycoprotein (IPR003428);TENOR=Os01t0143700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	2373854	2374066	.	-	0	Parent=Os01t0143700-00
Chr01	irgsp1_rep	CDS	2372582	2372988	.	-	0	Parent=Os01t0143700-00
Chr01	irgsp1_rep	CDS	2372323	2372482	.	-	1	Parent=Os01t0143700-00
Chr01	irgsp1_rep	mRNA	2372336	2374091	.	+	.	ID=Os01t0143750-00;Name=Os01t0143750-00;Locus_id=Os01g0143750;Note=Hypothetical protein.;Transcript_evidence=BT016884 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0143750-00
Chr01	irgsp1_rep	five_prime_UTR	2372336	2372389	.	+	.	Parent=Os01t0143750-00
Chr01	irgsp1_rep	CDS	2372390	2372482	.	+	0	Parent=Os01t0143750-00
Chr01	irgsp1_rep	CDS	2372582	2372761	.	+	0	Parent=Os01t0143750-00
Chr01	irgsp1_rep	three_prime_UTR	2372762	2372949	.	+	.	Parent=Os01t0143750-00
Chr01	irgsp1_rep	three_prime_UTR	2373844	2374091	.	+	.	Parent=Os01t0143750-00
Chr01	irgsp1_rep	mRNA	2374541	2376761	.	-	.	ID=Os01t0143800-01;Name=Os01t0143800-01;Locus_id=Os01g0143800;Note=Mitochondrial glycoprotein family protein.;Transcript_evidence=AK104561 (DDBJ%2C Best hit),AK066079 (DDBJ%2C Best hit);ORF_evidence=B6T540 (UniProt);GO=Cellular Component: mitochondrial matrix (GO:0005759);InterPro=Mitochondrial glycoprotein (IPR003428);NIAS_FLcDNA=006-306-C02,J013052K21;Expression=AK104561;TENOR=Os01t0143800-01;KEGG=Os01t0143800-01
Chr01	irgsp1_rep	five_prime_UTR	2376711	2376761	.	-	.	Parent=Os01t0143800-01
Chr01	irgsp1_rep	CDS	2376426	2376710	.	-	0	Parent=Os01t0143800-01
Chr01	irgsp1_rep	CDS	2375016	2375398	.	-	0	Parent=Os01t0143800-01
Chr01	irgsp1_rep	CDS	2374764	2374923	.	-	1	Parent=Os01t0143800-01
Chr01	irgsp1_rep	three_prime_UTR	2374541	2374763	.	-	.	Parent=Os01t0143800-01
Chr01	irgsp1_rep	mRNA	2374572	2376733	.	-	.	ID=Os01t0143800-03;Name=Os01t0143800-03;Locus_id=Os01g0143800;Note=Mitochondrial glycoprotein family protein.;Transcript_evidence=AK104721 (DDBJ%2C Best hit);ORF_evidence=B6T540 (UniProt);GO=Cellular Component: mitochondrial matrix (GO:0005759);InterPro=Mitochondrial glycoprotein (IPR003428);NIAS_FLcDNA=001-038-A12;Expression=AK104721;TENOR=Os01t0143800-03;KEGG=Os01t0143800-03
Chr01	irgsp1_rep	five_prime_UTR	2376711	2376733	.	-	.	Parent=Os01t0143800-03
Chr01	irgsp1_rep	CDS	2376426	2376710	.	-	0	Parent=Os01t0143800-03
Chr01	irgsp1_rep	CDS	2375016	2375398	.	-	0	Parent=Os01t0143800-03
Chr01	irgsp1_rep	CDS	2374764	2374923	.	-	1	Parent=Os01t0143800-03
Chr01	irgsp1_rep	three_prime_UTR	2374572	2374763	.	-	.	Parent=Os01t0143800-03
Chr01	irgsp1_rep	mRNA	2377369	2377984	.	-	.	ID=Os01t0143900-01;Name=Os01t0143900-01;Locus_id=Os01g0143900;Note=Conserved hypothetical protein.;Transcript_evidence=AK119686 (DDBJ%2C Best hit),AK120731 (DDBJ%2C Best hit);ORF_evidence=B8AD79 (UniProt);NIAS_FLcDNA=002-157-A05,J023003C05;Expression=AK119686;TENOR=Os01t0143900-01;KEGG=Os01t0143900-01
Chr01	irgsp1_rep	five_prime_UTR	2377849	2377984	.	-	.	Parent=Os01t0143900-01
Chr01	irgsp1_rep	CDS	2377627	2377848	.	-	0	Parent=Os01t0143900-01
Chr01	irgsp1_rep	three_prime_UTR	2377369	2377626	.	-	.	Parent=Os01t0143900-01
Chr01	irgsp1_rep	mRNA	2378825	2382584	.	-	.	ID=Os01t0144000-01;Name=Os01t0144000-01;Locus_id=Os01g0144000;Note=Conserved hypothetical protein.;Transcript_evidence=AK101834 (DDBJ%2C Best hit);ORF_evidence=B9EZG6 (UniProt);NIAS_FLcDNA=J033069B21;TENOR=Os01t0144000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	2382584	2382584	.	-	.	Parent=Os01t0144000-01
Chr01	irgsp1_rep	CDS	2382412	2382583	.	-	0	Parent=Os01t0144000-01
Chr01	irgsp1_rep	CDS	2382060	2382247	.	-	2	Parent=Os01t0144000-01
Chr01	irgsp1_rep	CDS	2381923	2381962	.	-	0	Parent=Os01t0144000-01
Chr01	irgsp1_rep	CDS	2381373	2381414	.	-	2	Parent=Os01t0144000-01
Chr01	irgsp1_rep	CDS	2380401	2380769	.	-	2	Parent=Os01t0144000-01
Chr01	irgsp1_rep	CDS	2379874	2379929	.	-	2	Parent=Os01t0144000-01
Chr01	irgsp1_rep	CDS	2379208	2379354	.	-	0	Parent=Os01t0144000-01
Chr01	irgsp1_rep	three_prime_UTR	2378825	2379207	.	-	.	Parent=Os01t0144000-01
Chr01	irgsp1_rep	mRNA	2383611	2385593	.	-	.	ID=Os01t0144100-01;Name=Os01t0144100-01;Locus_id=Os01g0144100;Note=Similar to Thylakoid lumenal 15 kDa protein%2C chloroplast precursor (p15).;Transcript_evidence=AK068113 (DDBJ%2C Best hit),AK058909 (DDBJ%2C Best hit),AK104051 (DDBJ%2C Best hit);ORF_evidence=XP_002880146.1 (RefSeq);InterPro=Pentapeptide repeat (IPR001646);NIAS_FLcDNA=J013133K22,001-008-F11,001-023-B04;Expression=AK068113;TENOR=Os01t0144100-01;KEGG=Os01t0144100-01
Chr01	irgsp1_rep	five_prime_UTR	2385528	2385593	.	-	.	Parent=Os01t0144100-01
Chr01	irgsp1_rep	CDS	2385261	2385527	.	-	0	Parent=Os01t0144100-01
Chr01	irgsp1_rep	CDS	2384997	2385069	.	-	0	Parent=Os01t0144100-01
Chr01	irgsp1_rep	CDS	2384784	2384845	.	-	2	Parent=Os01t0144100-01
Chr01	irgsp1_rep	CDS	2384319	2384400	.	-	0	Parent=Os01t0144100-01
Chr01	irgsp1_rep	CDS	2383993	2384053	.	-	2	Parent=Os01t0144100-01
Chr01	irgsp1_rep	CDS	2383821	2383872	.	-	1	Parent=Os01t0144100-01
Chr01	irgsp1_rep	three_prime_UTR	2383611	2383820	.	-	.	Parent=Os01t0144100-01
Chr01	irgsp1_rep	mRNA	2386373	2388597	.	+	.	ID=Os01t0144200-01;Name=Os01t0144200-01;Locus_id=Os01g0144200;Note=Vacuolar import and degradation protein Vid24 domain containing protein.;Transcript_evidence=AK059740 (DDBJ%2C Best hit);ORF_evidence=B6TB48 (UniProt);InterPro=Vacuolar import/degradation protein Vid24 (IPR018618);NIAS_FLcDNA=006-202-F03;Expression=AK059740;TENOR=Os01t0144200-01;KEGG=Os01t0144200-01
Chr01	irgsp1_rep	five_prime_UTR	2386373	2386463	.	+	.	Parent=Os01t0144200-01
Chr01	irgsp1_rep	CDS	2386464	2386515	.	+	0	Parent=Os01t0144200-01
Chr01	irgsp1_rep	CDS	2387010	2387071	.	+	2	Parent=Os01t0144200-01
Chr01	irgsp1_rep	CDS	2387177	2387320	.	+	0	Parent=Os01t0144200-01
Chr01	irgsp1_rep	CDS	2387496	2387569	.	+	0	Parent=Os01t0144200-01
Chr01	irgsp1_rep	CDS	2387698	2387752	.	+	1	Parent=Os01t0144200-01
Chr01	irgsp1_rep	CDS	2387830	2387892	.	+	0	Parent=Os01t0144200-01
Chr01	irgsp1_rep	CDS	2387983	2388110	.	+	0	Parent=Os01t0144200-01
Chr01	irgsp1_rep	CDS	2388211	2388289	.	+	1	Parent=Os01t0144200-01
Chr01	irgsp1_rep	three_prime_UTR	2388290	2388597	.	+	.	Parent=Os01t0144200-01
Chr01	irgsp1_rep	mRNA	2388605	2390483	.	-	.	ID=Os01t0144300-01;Name=Os01t0144300-01;Locus_id=Os01g0144300;Note=Conserved hypothetical protein.;Transcript_evidence=AK072770 (DDBJ%2C Best hit);ORF_evidence=B9EZG8 (UniProt);NIAS_FLcDNA=J023134M16;Expression=AK072770;TENOR=Os01t0144300-01;KEGG=Os01t0144300-01
Chr01	irgsp1_rep	five_prime_UTR	2390405	2390483	.	-	.	Parent=Os01t0144300-01
Chr01	irgsp1_rep	CDS	2390338	2390404	.	-	0	Parent=Os01t0144300-01
Chr01	irgsp1_rep	CDS	2389814	2390104	.	-	2	Parent=Os01t0144300-01
Chr01	irgsp1_rep	CDS	2389061	2389684	.	-	2	Parent=Os01t0144300-01
Chr01	irgsp1_rep	CDS	2388942	2388973	.	-	2	Parent=Os01t0144300-01
Chr01	irgsp1_rep	three_prime_UTR	2388605	2388941	.	-	.	Parent=Os01t0144300-01
Chr01	irgsp1_rep	mRNA	2391464	2397295	.	-	.	ID=Os01t0144340-00;Name=Os01t0144340-00;Locus_id=Os01g0144340;Note=Similar to Actin-related protein 5.;Transcript_evidence=AK365434 (DDBJ);ORF_evidence=A2ZP58 (UniProt);InterPro=Actin-like (IPR004000);TENOR=Os01t0144340-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	2397148	2397295	.	-	.	Parent=Os01t0144340-00
Chr01	irgsp1_rep	CDS	2397047	2397147	.	-	0	Parent=Os01t0144340-00
Chr01	irgsp1_rep	CDS	2396856	2396926	.	-	1	Parent=Os01t0144340-00
Chr01	irgsp1_rep	CDS	2396144	2396268	.	-	2	Parent=Os01t0144340-00
Chr01	irgsp1_rep	CDS	2395581	2395622	.	-	0	Parent=Os01t0144340-00
Chr01	irgsp1_rep	CDS	2394773	2394875	.	-	0	Parent=Os01t0144340-00
Chr01	irgsp1_rep	CDS	2394560	2394669	.	-	2	Parent=Os01t0144340-00
Chr01	irgsp1_rep	CDS	2393833	2393942	.	-	0	Parent=Os01t0144340-00
Chr01	irgsp1_rep	CDS	2393657	2393747	.	-	1	Parent=Os01t0144340-00
Chr01	irgsp1_rep	CDS	2393081	2393512	.	-	0	Parent=Os01t0144340-00
Chr01	irgsp1_rep	CDS	2392793	2392911	.	-	0	Parent=Os01t0144340-00
Chr01	irgsp1_rep	CDS	2392090	2392432	.	-	1	Parent=Os01t0144340-00
Chr01	irgsp1_rep	CDS	2391471	2391968	.	-	0	Parent=Os01t0144340-00
Chr01	irgsp1_rep	three_prime_UTR	2391464	2391470	.	-	.	Parent=Os01t0144340-00
Chr01	irgsp1_rep	mRNA	2393483	2398292	.	+	.	ID=Os01t0144380-01;Name=Os01t0144380-01;Locus_id=Os01g0144380;Note=Hypothetical gene.;Transcript_evidence=AK288541 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090046C16;TENOR=Os01t0144380-01;KEGG=Os01t0144380-01
Chr01	irgsp1_rep	five_prime_UTR	2393483	2396884	.	+	.	Parent=Os01t0144380-01
Chr01	irgsp1_rep	CDS	2396885	2397274	.	+	0	Parent=Os01t0144380-01
Chr01	irgsp1_rep	three_prime_UTR	2397275	2398292	.	+	.	Parent=Os01t0144380-01
Chr01	irgsp1_rep	mRNA	2400945	2402336	.	-	.	ID=Os01t0144500-00;Name=Os01t0144500-00;Locus_id=Os01g0144500;Note=Ubiquitin fusion degradation protein UFD1 domain containing protein.;Transcript_evidence=AK331494 (DDBJ);ORF_evidence=Q5ZBL5 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);InterPro=Ubiquitin fusion degradation protein UFD1 (IPR004854);TENOR=Os01t0144500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	2402184	2402336	.	-	0	Parent=Os01t0144500-00
Chr01	irgsp1_rep	CDS	2401927	2402057	.	-	0	Parent=Os01t0144500-00
Chr01	irgsp1_rep	CDS	2400945	2401395	.	-	1	Parent=Os01t0144500-00
Chr01	irgsp1_rep	mRNA	2403276	2405947	.	+	.	ID=Os01t0144600-01;Name=Os01t0144600-01;Locus_id=Os01g0144600;Note=Conserved hypothetical protein.;Transcript_evidence=AK061501 (DDBJ%2C Best hit),AK102823 (DDBJ%2C Best hit);ORF_evidence=B8AD83 (UniProt);NIAS_FLcDNA=006-309-E03,J033108P10;TENOR=Os01t0144600-01
Chr01	irgsp1_rep	five_prime_UTR	2403276	2403398	.	+	.	Parent=Os01t0144600-01
Chr01	irgsp1_rep	CDS	2403399	2403441	.	+	0	Parent=Os01t0144600-01
Chr01	irgsp1_rep	CDS	2403546	2403684	.	+	2	Parent=Os01t0144600-01
Chr01	irgsp1_rep	CDS	2404256	2404337	.	+	1	Parent=Os01t0144600-01
Chr01	irgsp1_rep	CDS	2404417	2404502	.	+	0	Parent=Os01t0144600-01
Chr01	irgsp1_rep	CDS	2405435	2405687	.	+	1	Parent=Os01t0144600-01
Chr01	irgsp1_rep	three_prime_UTR	2405688	2405947	.	+	.	Parent=Os01t0144600-01
Chr01	irgsp1_rep	mRNA	2406475	2408051	.	+	.	ID=Os01t0144700-01;Name=Os01t0144700-01;Locus_id=Os01g0144700;Note=Conserved hypothetical protein.;Transcript_evidence=AK063058 (DDBJ%2C Best hit);ORF_evidence=NP_001042006.1 (RefSeq);NIAS_FLcDNA=001-110-F06;TENOR=Os01t0144700-01;KEGG=Os01t0144700-01
Chr01	irgsp1_rep	five_prime_UTR	2406475	2406557	.	+	.	Parent=Os01t0144700-01
Chr01	irgsp1_rep	CDS	2406558	2406694	.	+	0	Parent=Os01t0144700-01
Chr01	irgsp1_rep	CDS	2407668	2407806	.	+	1	Parent=Os01t0144700-01
Chr01	irgsp1_rep	three_prime_UTR	2407807	2408051	.	+	.	Parent=Os01t0144700-01
Chr01	irgsp1_rep	mRNA	2414271	2415072	.	+	.	ID=Os01t0144800-01;Name=Os01t0144800-01;Locus_id=Os01g0144800;Note=Protein of unknown function DUF3681 domain containing protein.;Transcript_evidence=AK110697 (DDBJ%2C Best hit);ORF_evidence=B9ESU2 (UniProt);InterPro=Protein of unknown function DUF3681 (IPR022149);NIAS_FLcDNA=002-170-A12;Expression=AK110697;TENOR=Os01t0144800-01;KEGG=Os01t0144800-01
Chr01	irgsp1_rep	five_prime_UTR	2414271	2414351	.	+	.	Parent=Os01t0144800-01
Chr01	irgsp1_rep	CDS	2414352	2414690	.	+	0	Parent=Os01t0144800-01
Chr01	irgsp1_rep	three_prime_UTR	2414691	2415072	.	+	.	Parent=Os01t0144800-01
Chr01	irgsp1_rep	mRNA	2416643	2418825	.	+	.	ID=Os01t0144900-01;Name=Os01t0144900-01;Locus_id=Os01g0144900;Note=Hypothetical protein.;Transcript_evidence=AK101726 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033061D12;Expression=AK101726;TENOR=Os01t0144900-01;KEGG=Os01t0144900-01
Chr01	irgsp1_rep	five_prime_UTR	2416643	2416781	.	+	.	Parent=Os01t0144900-01
Chr01	irgsp1_rep	CDS	2416782	2417051	.	+	0	Parent=Os01t0144900-01
Chr01	irgsp1_rep	three_prime_UTR	2417052	2418825	.	+	.	Parent=Os01t0144900-01
Chr01	irgsp1_rep	mRNA	2422347	2422682	.	+	.	ID=Os01t0145000-00;Name=Os01t0145000-00;Locus_id=Os01g0145000;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5ZBL0 (UniProt);InterPro=Protein of unknown function DUF3681 (IPR022149);TENOR=Os01t0145000-00;KEGG=Os01t0145000-00
Chr01	irgsp1_rep	CDS	2422347	2422682	.	+	0	Parent=Os01t0145000-00
Chr01	irgsp1_rep	mRNA	2434793	2438772	.	+	.	ID=Os01t0145200-01;Name=Os01t0145200-01;Locus_id=Os01g0145200;Note=Protein of unknown function DUF3681 domain containing protein.;Transcript_evidence=AK243072 (DDBJ%2C Best hit);ORF_evidence=B9ESU3 (UniProt);InterPro=Protein of unknown function DUF3681 (IPR022149);NIAS_FLcDNA=J100017K24;TENOR=Os01t0145200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	2434793	2434841	.	+	.	Parent=Os01t0145200-01
Chr01	irgsp1_rep	CDS	2434842	2435173	.	+	0	Parent=Os01t0145200-01
Chr01	irgsp1_rep	CDS	2438034	2438127	.	+	1	Parent=Os01t0145200-01
Chr01	irgsp1_rep	three_prime_UTR	2438128	2438772	.	+	.	Parent=Os01t0145200-01
Chr01	irgsp1_rep	mRNA	2453742	2456495	.	+	.	ID=Os01t0145600-01;Name=Os01t0145600-01;Locus_id=Os01g0145600;Note=Conserved hypothetical protein.;Transcript_evidence=AK072818 (DDBJ%2C Best hit);ORF_evidence=NP_001172177.1 (RefSeq);NIAS_FLcDNA=J023142N16;Expression=AK072818;TENOR=Os01t0145600-01;KEGG=Os01t0145600-01
Chr01	irgsp1_rep	five_prime_UTR	2453742	2454074	.	+	.	Parent=Os01t0145600-01
Chr01	irgsp1_rep	five_prime_UTR	2455931	2455934	.	+	.	Parent=Os01t0145600-01
Chr01	irgsp1_rep	CDS	2455935	2456150	.	+	0	Parent=Os01t0145600-01
Chr01	irgsp1_rep	three_prime_UTR	2456151	2456495	.	+	.	Parent=Os01t0145600-01
Chr01	irgsp1_rep	mRNA	2488413	2491357	.	+	.	ID=Os01t0146101-01;Name=Os01t0146101-01;Locus_id=Os01g0146101;Note=Conserved hypothetical protein.;Transcript_evidence=AK242194 (DDBJ%2C Best hit);ORF_evidence=NP_001172177.1 (RefSeq);NIAS_FLcDNA=J075164I10;TENOR=Os01t0146101-01;KEGG=Os01t0146101-01
Chr01	irgsp1_rep	five_prime_UTR	2488413	2488707	.	+	.	Parent=Os01t0146101-01
Chr01	irgsp1_rep	five_prime_UTR	2490800	2490810	.	+	.	Parent=Os01t0146101-01
Chr01	irgsp1_rep	CDS	2490811	2491107	.	+	0	Parent=Os01t0146101-01
Chr01	irgsp1_rep	three_prime_UTR	2491108	2491357	.	+	.	Parent=Os01t0146101-01
Chr01	irgsp1_rep	mRNA	2500280	2501248	.	+	.	ID=Os01t0146200-01;Name=Os01t0146200-01;Locus_id=Os01g0146200;Note=Protein of unknown function DUF3681 domain containing protein.;Transcript_evidence=AK242893 (DDBJ%2C Best hit);ORF_evidence=NP_001172178.1 (RefSeq);InterPro=Protein of unknown function DUF3681 (IPR022149);NIAS_FLcDNA=J090080H03;TENOR=Os01t0146200-01;KEGG=Os01t0146200-01
Chr01	irgsp1_rep	five_prime_UTR	2500280	2500349	.	+	.	Parent=Os01t0146200-01
Chr01	irgsp1_rep	CDS	2500350	2500682	.	+	0	Parent=Os01t0146200-01
Chr01	irgsp1_rep	three_prime_UTR	2500683	2501248	.	+	.	Parent=Os01t0146200-01
Chr01	irgsp1_rep	mRNA	2530890	2531390	.	-	.	ID=Os01t0146600-01;Name=Os01t0146600-01;Locus_id=Os01g0146600;Note=Conserved hypothetical protein.;Transcript_evidence=AK109179 (DDBJ%2C Best hit);ORF_evidence=A2WKL3 (UniProt);NIAS_FLcDNA=002-156-A02;TENOR=Os01t0146600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	2530968	2531390	.	-	0	Parent=Os01t0146600-01
Chr01	irgsp1_rep	three_prime_UTR	2530890	2530967	.	-	.	Parent=Os01t0146600-01
Chr01	irgsp1_rep	mRNA	2541950	2542484	.	-	.	ID=Os01t0146801-00;Name=Os01t0146801-00;Locus_id=Os01g0146801;Note=Conserved hypothetical protein.;Transcript_evidence=AK063128 (DDBJ%2C Secondary hit);ORF_evidence=NP_001174291.1 (RefSeq);TENOR=Os01t0146801-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	2542429	2542484	.	-	.	Parent=Os01t0146801-00
Chr01	irgsp1_rep	CDS	2542420	2542428	.	-	0	Parent=Os01t0146801-00
Chr01	irgsp1_rep	CDS	2542315	2542401	.	-	0	Parent=Os01t0146801-00
Chr01	irgsp1_rep	CDS	2542108	2542293	.	-	0	Parent=Os01t0146801-00
Chr01	irgsp1_rep	three_prime_UTR	2541950	2542107	.	-	.	Parent=Os01t0146801-00
Chr01	irgsp1_rep	mRNA	2550946	2551461	.	+	.	ID=Os01t0147001-00;Name=Os01t0147001-00;Locus_id=Os01g0147001;Note=Similar to H0212B02.9 protein.;Transcript_evidence=BT087014 (DDBJ);ORF_evidence=Q25AL8 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity (GO:0015018);InterPro=Glycosyl transferase%2C family 43 (IPR005027);TENOR=Os01t0147001-00
Chr01	irgsp1_rep	CDS	2550946	2551461	.	+	0	Parent=Os01t0147001-00
Chr01	irgsp1_rep	mRNA	2560897	2565321	.	+	.	ID=Os01t0147200-01;Name=Os01t0147200-01;Locus_id=Os01g0147200;RAP-DB Gene Symbol Synonym(s)=IWS1%2C ASD1;RAP-DB Gene Name Synonym(s)=alternate semi-dwarf 1;CGSNL Gene Symbol=ASD1;CGSNL Gene Name=ALTERNATE SEMI-DWARF 1;Oryzabase Gene Symbol Synonym(s)=IWS1%2C OsIWS1;Oryzabase Gene Name Synonym(s)=alternate semi-dwarf 1%2C Interact-With-Spt6 1;Note=C-terminus family protein%2C Responsible for the dwarf nature with least penalty on yield;Transcript_evidence=AK121921;ORF_evidence=Q5ZDL8;GO=Cellular Component: nucleus (GO:0005634);InterPro=TFIIS/LEDGF domain superfamily (IPR035441),Transcription factor IIS%2C N-terminal (IPR017923);NIAS_FLcDNA=J033106E16;Manual Curation=December 20%2C 2018;Literature_PMID=29387899;Oryzabase=22322;Expression=AK121921;TENOR=Os01t0147200-01;KEGG=Os01t0147200-01
Chr01	irgsp1_rep	five_prime_UTR	2560897	2560989	.	+	.	Parent=Os01t0147200-01
Chr01	irgsp1_rep	CDS	2560990	2561000	.	+	0	Parent=Os01t0147200-01
Chr01	irgsp1_rep	CDS	2561102	2561675	.	+	1	Parent=Os01t0147200-01
Chr01	irgsp1_rep	CDS	2562630	2562749	.	+	0	Parent=Os01t0147200-01
Chr01	irgsp1_rep	CDS	2563224	2563444	.	+	0	Parent=Os01t0147200-01
Chr01	irgsp1_rep	CDS	2563564	2563693	.	+	1	Parent=Os01t0147200-01
Chr01	irgsp1_rep	CDS	2563839	2563901	.	+	0	Parent=Os01t0147200-01
Chr01	irgsp1_rep	CDS	2563997	2564074	.	+	0	Parent=Os01t0147200-01
Chr01	irgsp1_rep	CDS	2564176	2564267	.	+	0	Parent=Os01t0147200-01
Chr01	irgsp1_rep	CDS	2564377	2564439	.	+	1	Parent=Os01t0147200-01
Chr01	irgsp1_rep	CDS	2564527	2564677	.	+	1	Parent=Os01t0147200-01
Chr01	irgsp1_rep	CDS	2564788	2564886	.	+	0	Parent=Os01t0147200-01
Chr01	irgsp1_rep	three_prime_UTR	2564887	2565321	.	+	.	Parent=Os01t0147200-01
Chr01	irgsp1_rep	mRNA	2560917	2562589	.	+	.	ID=Os01t0147200-02;Name=Os01t0147200-02;Locus_id=Os01g0147200;CGSNL Gene Symbol=ASD1;CGSNL Gene Name=ALTERNATE SEMI-DWARF 1;Oryzabase Gene Symbol Synonym(s)=IWS1%2C OsIWS1;Oryzabase Gene Name Synonym(s)=alternate semi-dwarf 1%2C Interact-With-Spt6 1;Note=Similar to IWS1 C-terminus family protein.;Transcript_evidence=AK106463 (DDBJ%2C Best hit);ORF_evidence=B9ESV1 (UniProt);NIAS_FLcDNA=002-103-G11;Oryzabase=22322;Expression=AK106463;TENOR=Os01t0147200-02;KEGG=Os01t0147200-02
Chr01	irgsp1_rep	five_prime_UTR	2560917	2560989	.	+	.	Parent=Os01t0147200-02
Chr01	irgsp1_rep	CDS	2560990	2561000	.	+	0	Parent=Os01t0147200-02
Chr01	irgsp1_rep	CDS	2561102	2561807	.	+	1	Parent=Os01t0147200-02
Chr01	irgsp1_rep	three_prime_UTR	2561808	2562589	.	+	.	Parent=Os01t0147200-02
Chr01	irgsp1_rep	mRNA	2566663	2569855	.	-	.	ID=Os01t0147250-01;Name=Os01t0147250-01;Locus_id=Os01g0147250;Note=Hypothetical gene.;Transcript_evidence=AK288985 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090086E09;TENOR=Os01t0147250-01
Chr01	irgsp1_rep	five_prime_UTR	2567160	2569855	.	-	.	Parent=Os01t0147250-01
Chr01	irgsp1_rep	CDS	2566663	2567159	.	-	0	Parent=Os01t0147250-01
Chr01	irgsp1_rep	mRNA	2568051	2570029	.	+	.	ID=Os01t0147300-01;Name=Os01t0147300-01;Locus_id=Os01g0147300;Oryzabase Gene Symbol Synonym(s)=OsSTA4%2C OsRhmbd1%2C RHMBD1;Oryzabase Gene Name Synonym(s)=Rhomboid 1%2C RHOMBOID 1;Note=Similar to membrane protein.;Transcript_evidence=AK242128 (DDBJ%2C Best hit);ORF_evidence=NP_001151264.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Cellular Component: integral to membrane (GO:0016021),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S54%2C rhomboid (IPR002610),Peptidase S54%2C rhomboid domain (IPR022764);NIAS_FLcDNA=J075148G02;Oryzabase=19321;TENOR=Os01t0147300-01;KEGG=Os01t0147300-01
Chr01	irgsp1_rep	CDS	2568051	2568152	.	+	0	Parent=Os01t0147300-01
Chr01	irgsp1_rep	CDS	2568237	2568496	.	+	0	Parent=Os01t0147300-01
Chr01	irgsp1_rep	CDS	2568594	2568720	.	+	1	Parent=Os01t0147300-01
Chr01	irgsp1_rep	CDS	2569225	2569350	.	+	0	Parent=Os01t0147300-01
Chr01	irgsp1_rep	three_prime_UTR	2569351	2570029	.	+	.	Parent=Os01t0147300-01
Chr01	irgsp1_rep	mRNA	2570072	2571010	.	-	.	ID=Os01t0147400-00;Name=Os01t0147400-00;Locus_id=Os01g0147400;Note=Uncharacterised domain XH domain containing protein.;Transcript_evidence=EU947732 (DDBJ);ORF_evidence=NP_001042013.1 (RefSeq);InterPro=Uncharacterised domain XH (IPR005379);TENOR=Os01t0147400-00
Chr01	irgsp1_rep	CDS	2570738	2571010	.	-	0	Parent=Os01t0147400-00
Chr01	irgsp1_rep	CDS	2570418	2570633	.	-	0	Parent=Os01t0147400-00
Chr01	irgsp1_rep	CDS	2570072	2570305	.	-	0	Parent=Os01t0147400-00
Chr01	irgsp1_rep	mRNA	2573049	2577415	.	-	.	ID=Os01t0147600-00;Name=Os01t0147600-00;Locus_id=Os01g0147600;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2WKM8 (UniProt);TENOR=Os01t0147600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	2577360	2577415	.	-	0	Parent=Os01t0147600-00
Chr01	irgsp1_rep	CDS	2577140	2577312	.	-	1	Parent=Os01t0147600-00
Chr01	irgsp1_rep	CDS	2576853	2577055	.	-	2	Parent=Os01t0147600-00
Chr01	irgsp1_rep	CDS	2573958	2574048	.	-	0	Parent=Os01t0147600-00
Chr01	irgsp1_rep	CDS	2573280	2573405	.	-	2	Parent=Os01t0147600-00
Chr01	irgsp1_rep	CDS	2573049	2573179	.	-	2	Parent=Os01t0147600-00
Chr01	irgsp1_rep	mRNA	2575172	2575564	.	-	.	ID=Os01t0147650-00;Name=Os01t0147650-00;Locus_id=Os01g0147650;Note=Non-protein coding transcript.;Transcript_evidence=CT834946 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os01t0147650-00
Chr01	irgsp1_rep	exon	2575172	2575564	.	-	.	Parent=Os01t0147650-00
Chr01	irgsp1_rep	mRNA	2579565	2583575	.	-	.	ID=Os01t0147700-01;Name=Os01t0147700-01;Locus_id=Os01g0147700;Note=Region of unknown function XH domain containing protein.;Transcript_evidence=AK066686 (DDBJ%2C Best hit);ORF_evidence=A2ZP86 (UniProt);InterPro=Uncharacterised domain XH (IPR005379),XS domain (IPR005380),Zinc finger-XS domain (IPR005381);NIAS_FLcDNA=J013070L04;Expression=AK066686;TENOR=Os01t0147700-01;KEGG=Os01t0147700-01
Chr01	irgsp1_rep	five_prime_UTR	2583471	2583575	.	-	.	Parent=Os01t0147700-01
Chr01	irgsp1_rep	CDS	2582366	2583470	.	-	0	Parent=Os01t0147700-01
Chr01	irgsp1_rep	CDS	2581258	2581439	.	-	2	Parent=Os01t0147700-01
Chr01	irgsp1_rep	CDS	2580961	2581050	.	-	0	Parent=Os01t0147700-01
Chr01	irgsp1_rep	CDS	2580580	2580858	.	-	0	Parent=Os01t0147700-01
Chr01	irgsp1_rep	CDS	2580243	2580455	.	-	0	Parent=Os01t0147700-01
Chr01	irgsp1_rep	CDS	2579911	2580144	.	-	0	Parent=Os01t0147700-01
Chr01	irgsp1_rep	three_prime_UTR	2579565	2579910	.	-	.	Parent=Os01t0147700-01
Chr01	irgsp1_rep	mRNA	2584986	2587547	.	-	.	ID=Os01t0147800-01;Name=Os01t0147800-01;Locus_id=Os01g0147800;Note=Domain of unknown function DUF547 domain containing protein.;Transcript_evidence=AK106926 (DDBJ%2C Best hit);ORF_evidence=A2ZP87 (UniProt);InterPro=Domain of unknown function DUF547 (IPR006869);NIAS_FLcDNA=002-119-B10;TENOR=Os01t0147800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	2587511	2587547	.	-	.	Parent=Os01t0147800-01
Chr01	irgsp1_rep	CDS	2587183	2587510	.	-	0	Parent=Os01t0147800-01
Chr01	irgsp1_rep	CDS	2586504	2586906	.	-	2	Parent=Os01t0147800-01
Chr01	irgsp1_rep	CDS	2586322	2586421	.	-	1	Parent=Os01t0147800-01
Chr01	irgsp1_rep	CDS	2586162	2586221	.	-	0	Parent=Os01t0147800-01
Chr01	irgsp1_rep	CDS	2585987	2586070	.	-	0	Parent=Os01t0147800-01
Chr01	irgsp1_rep	CDS	2585776	2585883	.	-	0	Parent=Os01t0147800-01
Chr01	irgsp1_rep	CDS	2585332	2585661	.	-	0	Parent=Os01t0147800-01
Chr01	irgsp1_rep	three_prime_UTR	2584986	2585331	.	-	.	Parent=Os01t0147800-01
Chr01	irgsp1_rep	mRNA	2585294	2585668	.	+	.	ID=Os01t0147850-00;Name=Os01t0147850-00;Locus_id=Os01g0147850;Note=Hypothetical protein.;Transcript_evidence=EU945300 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0147850-00
Chr01	irgsp1_rep	five_prime_UTR	2585294	2585295	.	+	.	Parent=Os01t0147850-00
Chr01	irgsp1_rep	CDS	2585296	2585668	.	+	0	Parent=Os01t0147850-00
Chr01	irgsp1_rep	mRNA	2589835	2593568	.	-	.	ID=Os01t0147900-01;Name=Os01t0147900-01;Locus_id=Os01g0147900;RAP-DB Gene Symbol Synonym(s)=OsTPI1%2C OsTPI1.1;RAP-DB Gene Name Synonym(s)=triosephosphate isomerase;CGSNL Gene Symbol=TPI;CGSNL Gene Name=TRIOSEPHOSPHATE ISOMERASE;Oryzabase Gene Symbol Synonym(s)=tpi*%2C tips%2C TI%2C OsTPI1%2C TPI1%2C OsTPI1.1%2C OsTPI1.2;Oryzabase Gene Name Synonym(s)=triosephosphate isomerase (cloned gene)%2C triosephosphate isomerase%2C Triosephosphate isomerase%2C cytosolic%2C Triose-phosphate isomerase%2C triosephosphate isomerase-2%2C Cytosolic Triosephosphate lsomerase%2C Triose-phosphate isomerase;Note=Triosephosphate isomerase%2C Glycolytic enzyme%2C Key component in XA3/XA26-mediated resistance to Xoo;Transcript_evidence=AK060920;ORF_evidence=P48494;GO=Biological Process: glycolytic process (GO:0006096),Molecular Function: catalytic activity (GO:0003824),Molecular Function: triose-phosphate isomerase activity (GO:0004807);InterPro=Aldolase-type TIM barrel (IPR013785),Triosephosphate isomerase superfamily (IPR035990),Triosephosphate isomerase (IPR000652),Triosephosphate isomerase%2C bacterial/eukaryotic (IPR022896),Triosephosphate isomerase%2C active site (IPR020861);NIAS_FLcDNA=001-035-H02;Manual Curation=October 11%2C 2018;Literature_PMID=30158116;Oryzabase=456;TENOR=Os01t0147900-01;KEGG=Os01t0147900-01 (EC 5.3.1.1);B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=cytoplasm (GO:0005737)
Chr01	irgsp1_rep	five_prime_UTR	2593518	2593568	.	-	.	Parent=Os01t0147900-01
Chr01	irgsp1_rep	CDS	2593479	2593517	.	-	0	Parent=Os01t0147900-01
Chr01	irgsp1_rep	CDS	2592297	2592372	.	-	0	Parent=Os01t0147900-01
Chr01	irgsp1_rep	CDS	2592040	2592163	.	-	2	Parent=Os01t0147900-01
Chr01	irgsp1_rep	CDS	2591601	2591685	.	-	1	Parent=Os01t0147900-01
Chr01	irgsp1_rep	CDS	2591198	2591330	.	-	0	Parent=Os01t0147900-01
Chr01	irgsp1_rep	CDS	2590622	2590716	.	-	2	Parent=Os01t0147900-01
Chr01	irgsp1_rep	CDS	2590414	2590492	.	-	0	Parent=Os01t0147900-01
Chr01	irgsp1_rep	CDS	2590214	2590296	.	-	2	Parent=Os01t0147900-01
Chr01	irgsp1_rep	CDS	2590074	2590121	.	-	0	Parent=Os01t0147900-01
Chr01	irgsp1_rep	three_prime_UTR	2589835	2590073	.	-	.	Parent=Os01t0147900-01
Chr01	irgsp1_rep	mRNA	2589897	2593567	.	+	.	ID=Os01t0147950-00;Name=Os01t0147950-00;Locus_id=Os01g0147950;Note=Non-protein coding transcript.;Transcript_evidence=BT016352 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0147950-00
Chr01	irgsp1_rep	exon	2589897	2590145	.	+	.	Parent=Os01t0147950-00
Chr01	irgsp1_rep	exon	2590238	2590298	.	+	.	Parent=Os01t0147950-00
Chr01	irgsp1_rep	exon	2590547	2590718	.	+	.	Parent=Os01t0147950-00
Chr01	irgsp1_rep	exon	2591201	2591330	.	+	.	Parent=Os01t0147950-00
Chr01	irgsp1_rep	exon	2591601	2591692	.	+	.	Parent=Os01t0147950-00
Chr01	irgsp1_rep	exon	2592046	2592176	.	+	.	Parent=Os01t0147950-00
Chr01	irgsp1_rep	exon	2592312	2592364	.	+	.	Parent=Os01t0147950-00
Chr01	irgsp1_rep	exon	2593468	2593567	.	+	.	Parent=Os01t0147950-00
Chr01	irgsp1_rep	mRNA	2599732	2603593	.	+	.	ID=Os01t0148000-00;Name=Os01t0148000-00;Locus_id=Os01g0148000;Note=Similar to predicted protein.;Transcript_evidence=tplb0002l09 (Wheat FLcDNA);ORF_evidence=NP_195851.2 (RefSeq);GO=Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C N-recognin (IPR003126),Zinc finger%2C N-recognin%2C metazoa (IPR013993);TENOR=Os01t0148000-00;KEGG=Os01t0148000-00
Chr01	irgsp1_rep	five_prime_UTR	2599732	2599849	.	+	.	Parent=Os01t0148000-00
Chr01	irgsp1_rep	CDS	2599850	2599924	.	+	0	Parent=Os01t0148000-00
Chr01	irgsp1_rep	CDS	2600756	2601844	.	+	0	Parent=Os01t0148000-00
Chr01	irgsp1_rep	CDS	2602352	2603593	.	+	0	Parent=Os01t0148000-00
Chr01	irgsp1_rep	mRNA	2605614	2612731	.	+	.	ID=Os01t0148050-01;Name=Os01t0148050-01;Locus_id=Os01g0148050;Note=Hypothetical conserved gene.;Transcript_evidence=AK242925 (DDBJ%2C Best hit);ORF_evidence=B9ESV3 (UniProt);NIAS_FLcDNA=J090085E17;TENOR=Os01t0148050-01;KEGG=Os01t0148050-01
Chr01	irgsp1_rep	five_prime_UTR	2605614	2605614	.	+	.	Parent=Os01t0148050-01
Chr01	irgsp1_rep	CDS	2605615	2605848	.	+	0	Parent=Os01t0148050-01
Chr01	irgsp1_rep	CDS	2606098	2606292	.	+	0	Parent=Os01t0148050-01
Chr01	irgsp1_rep	CDS	2606496	2607115	.	+	0	Parent=Os01t0148050-01
Chr01	irgsp1_rep	CDS	2607429	2607480	.	+	1	Parent=Os01t0148050-01
Chr01	irgsp1_rep	CDS	2607558	2608197	.	+	0	Parent=Os01t0148050-01
Chr01	irgsp1_rep	CDS	2609366	2609574	.	+	2	Parent=Os01t0148050-01
Chr01	irgsp1_rep	CDS	2609660	2610189	.	+	0	Parent=Os01t0148050-01
Chr01	irgsp1_rep	CDS	2610302	2610406	.	+	1	Parent=Os01t0148050-01
Chr01	irgsp1_rep	CDS	2610500	2610566	.	+	1	Parent=Os01t0148050-01
Chr01	irgsp1_rep	CDS	2610651	2610728	.	+	0	Parent=Os01t0148050-01
Chr01	irgsp1_rep	CDS	2611415	2611483	.	+	0	Parent=Os01t0148050-01
Chr01	irgsp1_rep	CDS	2611569	2611643	.	+	0	Parent=Os01t0148050-01
Chr01	irgsp1_rep	three_prime_UTR	2611644	2611673	.	+	.	Parent=Os01t0148050-01
Chr01	irgsp1_rep	three_prime_UTR	2612331	2612418	.	+	.	Parent=Os01t0148050-01
Chr01	irgsp1_rep	three_prime_UTR	2612506	2612731	.	+	.	Parent=Os01t0148050-01
Chr01	irgsp1_rep	mRNA	2613672	2623190	.	-	.	ID=Os01t0148100-01;Name=Os01t0148100-01;Locus_id=Os01g0148100;Note=Conserved hypothetical protein.;Transcript_evidence=AK067134 (DDBJ%2C Best hit);ORF_evidence=B9ESV4 (UniProt);NIAS_FLcDNA=J013094H22;Expression=AK067134;TENOR=Os01t0148100-01;KEGG=Os01t0148100-01
Chr01	irgsp1_rep	five_prime_UTR	2622992	2623190	.	-	.	Parent=Os01t0148100-01
Chr01	irgsp1_rep	five_prime_UTR	2619273	2619311	.	-	.	Parent=Os01t0148100-01
Chr01	irgsp1_rep	CDS	2619047	2619272	.	-	0	Parent=Os01t0148100-01
Chr01	irgsp1_rep	CDS	2618867	2618947	.	-	2	Parent=Os01t0148100-01
Chr01	irgsp1_rep	CDS	2617878	2618042	.	-	2	Parent=Os01t0148100-01
Chr01	irgsp1_rep	CDS	2617179	2617249	.	-	2	Parent=Os01t0148100-01
Chr01	irgsp1_rep	CDS	2616846	2617098	.	-	0	Parent=Os01t0148100-01
Chr01	irgsp1_rep	CDS	2615325	2615398	.	-	2	Parent=Os01t0148100-01
Chr01	irgsp1_rep	CDS	2614958	2615236	.	-	0	Parent=Os01t0148100-01
Chr01	irgsp1_rep	three_prime_UTR	2614543	2614957	.	-	.	Parent=Os01t0148100-01
Chr01	irgsp1_rep	three_prime_UTR	2614324	2614452	.	-	.	Parent=Os01t0148100-01
Chr01	irgsp1_rep	three_prime_UTR	2613672	2614004	.	-	.	Parent=Os01t0148100-01
Chr01	irgsp1_rep	mRNA	2629374	2630050	.	+	.	ID=Os01t0148200-01;Name=Os01t0148200-01;Locus_id=Os01g0148200;Note=Hypothetical protein.;Transcript_evidence=AK108014 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-135-H08;Expression=AK108014;TENOR=Os01t0148200-01;KEGG=Os01t0148200-01
Chr01	irgsp1_rep	five_prime_UTR	2629374	2629384	.	+	.	Parent=Os01t0148200-01
Chr01	irgsp1_rep	CDS	2629385	2629705	.	+	0	Parent=Os01t0148200-01
Chr01	irgsp1_rep	three_prime_UTR	2629706	2630050	.	+	.	Parent=Os01t0148200-01
Chr01	irgsp1_rep	mRNA	2632618	2637829	.	+	.	ID=Os01t0148400-01;Name=Os01t0148400-01;Locus_id=Os01g0148400;Note=Brix domain containing protein.;Transcript_evidence=AK099977 (DDBJ%2C Best hit);ORF_evidence=A2ZP91 (UniProt);InterPro=Brix domain (IPR007109);NIAS_FLcDNA=J013128N08;Expression=AK099977;TENOR=Os01t0148400-01;KEGG=Os01t0148400-01
Chr01	irgsp1_rep	five_prime_UTR	2632618	2632636	.	+	.	Parent=Os01t0148400-01
Chr01	irgsp1_rep	CDS	2632637	2632882	.	+	0	Parent=Os01t0148400-01
Chr01	irgsp1_rep	CDS	2633715	2633788	.	+	0	Parent=Os01t0148400-01
Chr01	irgsp1_rep	CDS	2633874	2634006	.	+	1	Parent=Os01t0148400-01
Chr01	irgsp1_rep	CDS	2634091	2634172	.	+	0	Parent=Os01t0148400-01
Chr01	irgsp1_rep	CDS	2634471	2634580	.	+	2	Parent=Os01t0148400-01
Chr01	irgsp1_rep	CDS	2634659	2634751	.	+	0	Parent=Os01t0148400-01
Chr01	irgsp1_rep	CDS	2634854	2634904	.	+	0	Parent=Os01t0148400-01
Chr01	irgsp1_rep	CDS	2635013	2635105	.	+	0	Parent=Os01t0148400-01
Chr01	irgsp1_rep	CDS	2636257	2637129	.	+	0	Parent=Os01t0148400-01
Chr01	irgsp1_rep	CDS	2637204	2637316	.	+	0	Parent=Os01t0148400-01
Chr01	irgsp1_rep	CDS	2637436	2637448	.	+	1	Parent=Os01t0148400-01
Chr01	irgsp1_rep	three_prime_UTR	2637449	2637829	.	+	.	Parent=Os01t0148400-01
Chr01	irgsp1_rep	mRNA	2641000	2644665	.	-	.	ID=Os01t0148500-01;Name=Os01t0148500-01;Locus_id=Os01g0148500;Note=Protein of unknown function DUF1677%2C Oryza sativa family protein.;Transcript_evidence=AK060256 (DDBJ%2C Best hit),AK099174 (DDBJ%2C Best hit);ORF_evidence=A2WKN7 (UniProt);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);NIAS_FLcDNA=001-004-E09,J023098D02;Expression=AK060256;TENOR=Os01t0148500-01;KEGG=Os01t0148500-01
Chr01	irgsp1_rep	five_prime_UTR	2644608	2644665	.	-	.	Parent=Os01t0148500-01
Chr01	irgsp1_rep	CDS	2643408	2644607	.	-	0	Parent=Os01t0148500-01
Chr01	irgsp1_rep	three_prime_UTR	2641000	2641281	.	-	.	Parent=Os01t0148500-01
Chr01	irgsp1_rep	mRNA	2652648	2655564	.	+	.	ID=Os01t0148700-01;Name=Os01t0148700-01;Locus_id=Os01g0148700;Note=Protein of unknown function DUF1677%2C Oryza sativa family protein.;Transcript_evidence=AK101727 (DDBJ%2C Best hit);ORF_evidence=A2ZP94 (UniProt);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);NIAS_FLcDNA=J033061D21;Expression=AK101727;TENOR=Os01t0148700-01;KEGG=Os01t0148700-01
Chr01	irgsp1_rep	five_prime_UTR	2652648	2652698	.	+	.	Parent=Os01t0148700-01
Chr01	irgsp1_rep	CDS	2652699	2653843	.	+	0	Parent=Os01t0148700-01
Chr01	irgsp1_rep	CDS	2655283	2655295	.	+	1	Parent=Os01t0148700-01
Chr01	irgsp1_rep	three_prime_UTR	2655296	2655564	.	+	.	Parent=Os01t0148700-01
Chr01	irgsp1_rep	mRNA	2652686	2655523	.	+	.	ID=Os01t0148700-02;Name=Os01t0148700-02;Locus_id=Os01g0148700;Note=Protein of unknown function DUF1677%2C Oryza sativa family protein.;Transcript_evidence=AK109379 (DDBJ%2C Best hit);ORF_evidence=A2ZP94 (UniProt);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);NIAS_FLcDNA=006-210-C07;Expression=AK109379;TENOR=Os01t0148700-02;KEGG=Os01t0148700-02
Chr01	irgsp1_rep	five_prime_UTR	2652686	2652698	.	+	.	Parent=Os01t0148700-02
Chr01	irgsp1_rep	CDS	2652699	2653843	.	+	0	Parent=Os01t0148700-02
Chr01	irgsp1_rep	CDS	2655283	2655295	.	+	1	Parent=Os01t0148700-02
Chr01	irgsp1_rep	three_prime_UTR	2655296	2655523	.	+	.	Parent=Os01t0148700-02
Chr01	irgsp1_rep	mRNA	2665085	2668967	.	-	.	ID=Os01t0149200-01;Name=Os01t0149200-01;Locus_id=Os01g0149200;CGSNL Gene Symbol=MT2D;CGSNL Gene Name=METALLOTHIONEIN 2D;Oryzabase Gene Symbol Synonym(s)=OsMT2d;Oryzabase Gene Name Synonym(s)=Metallothionein 2d%2C type 2 metallothionein d;Note=Hypothetical gene.;Transcript_evidence=AK069318 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023014M14;Oryzabase=11122;Expression=AK069318;TENOR=Os01t0149200-01;KEGG=Os01t0149200-01
Chr01	irgsp1_rep	five_prime_UTR	2667539	2668967	.	-	.	Parent=Os01t0149200-01
Chr01	irgsp1_rep	CDS	2667107	2667538	.	-	0	Parent=Os01t0149200-01
Chr01	irgsp1_rep	three_prime_UTR	2665085	2667106	.	-	.	Parent=Os01t0149200-01
Chr01	irgsp1_rep	mRNA	2669251	2674068	.	-	.	ID=Os01t0149350-00;Name=Os01t0149350-00;Locus_id=Os01g0149350;Note=NB-ARC domain containing protein.;Transcript_evidence=AB379819 (DDBJ%2C Best hit);ORF_evidence=B9A1G4 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os01t0149350-00;KEGG=Os01t0149350-00
Chr01	irgsp1_rep	five_prime_UTR	2673829	2674068	.	-	.	Parent=Os01t0149350-00
Chr01	irgsp1_rep	five_prime_UTR	2673573	2673733	.	-	.	Parent=Os01t0149350-00
Chr01	irgsp1_rep	five_prime_UTR	2672925	2673473	.	-	.	Parent=Os01t0149350-00
Chr01	irgsp1_rep	CDS	2669952	2672924	.	-	0	Parent=Os01t0149350-00
Chr01	irgsp1_rep	three_prime_UTR	2669948	2669951	.	-	.	Parent=Os01t0149350-00
Chr01	irgsp1_rep	three_prime_UTR	2669251	2669787	.	-	.	Parent=Os01t0149350-00
Chr01	irgsp1_rep	mRNA	2674414	2674683	.	+	.	ID=Os01t0149400-00;Name=Os01t0149400-00;Locus_id=Os01g0149400;Oryzabase Gene Name Synonym(s)=histone H2B;Note=Hypothetical protein.;Transcript_evidence=D29712 (DDBJ%2C Best hit);ORF_evidence=GeneMark;Oryzabase=17747;TENOR=Os01t0149400-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	2674414	2674415	.	+	.	Parent=Os01t0149400-00
Chr01	irgsp1_rep	CDS	2674416	2674683	.	+	0	Parent=Os01t0149400-00
Chr01	irgsp1_rep	mRNA	2681220	2686364	.	-	.	ID=Os01t0149500-01;Name=Os01t0149500-01;Locus_id=Os01g0149500;RAP-DB Gene Symbol Synonym(s)=PIT%2C Pit%2C Pit(K59)%2C Pit(Npb)%2C Pi-t%2C PitNpb%2C PitK59;RAP-DB Gene Name Synonym(s)=PYRICULARIA ORYZAE RESISTANCE T%2C Pyricularia oryzae resistance-t%2C Magnaporthe grisea resistance-t%2C Blast resistance 5;Note=NBS-LRR domain-containing protein%2C Rice blast disease resistance;Transcript_evidence=AB379817,KF741801,AK100477 (partial),AB379815 (K59);ORF_evidence=A2ZP99;GO=Molecular Function: ADP binding (GO:0043531);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),NB-ARC (IPR002182),Leucine-rich repeat domain%2C L domain-like (IPR032675);Manual Curation=January 8%2C 2016;Literature_PMID=18808453;TENOR=Os01t0149500-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	2684989	2686364	.	-	.	Parent=Os01t0149500-01
Chr01	irgsp1_rep	CDS	2682019	2684988	.	-	0	Parent=Os01t0149500-01
Chr01	irgsp1_rep	three_prime_UTR	2681220	2681810	.	-	.	Parent=Os01t0149500-01
Chr01	irgsp1_rep	mRNA	2686729	2687456	.	+	.	ID=Os01t0149600-01;Name=Os01t0149600-01;Locus_id=Os01g0149600;RAP-DB Gene Symbol Synonym(s)=H2B;RAP-DB Gene Name Synonym(s)=histone 2B;CGSNL Gene Symbol=PIT;CGSNL Gene Name=PYRICULARIA ORYZAE RESISTANCE T;Oryzabase Gene Symbol Synonym(s)=Pit%2C Pit(K59)%2C Pit(Npb)%2C Pi-t%2C PitNpb%2C PitK59;Oryzabase Gene Name Synonym(s)=Pyricularia oryzae resistance-t%2C Magnaporthe grisea resistance-t%2C Blast resistance 5;Note=Histon H2B;Transcript_evidence=NM_001048561,AB379817 (complement);ORF_evidence=Q94JJ4;GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein heterodimerization activity (GO:0046982),Cellular Component: nucleosome (GO:0000786);InterPro=Histone H2B (IPR000558),Histone-fold (IPR009072),Histone H2A/H2B/H3 (IPR007125);Manual Curation=January 12%2C 2016;Literature_PMID=18808453;Oryzabase=445;TENOR=Os01t0149600-00
Chr01	irgsp1_rep	five_prime_UTR	2686729	2686801	.	+	.	Parent=Os01t0149600-01
Chr01	irgsp1_rep	CDS	2686802	2687263	.	+	0	Parent=Os01t0149600-01
Chr01	irgsp1_rep	three_prime_UTR	2687264	2687456	.	+	.	Parent=Os01t0149600-01
Chr01	irgsp1_rep	mRNA	2688460	2692024	.	-	.	ID=Os01t0149700-00;Name=Os01t0149700-00;Locus_id=Os01g0149700;Note=Hypothetical conserved gene.;Transcript_evidence=AB379821 (DDBJ%2C Best hit);ORF_evidence=NP_001042027.2 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);TENOR=Os01t0149700-00;KEGG=Os01t0149700-00 (EC:4.6.1.1)
Chr01	irgsp1_rep	five_prime_UTR	2691943	2692024	.	-	.	Parent=Os01t0149700-00
Chr01	irgsp1_rep	CDS	2690824	2691942	.	-	0	Parent=Os01t0149700-00
Chr01	irgsp1_rep	three_prime_UTR	2689195	2690823	.	-	.	Parent=Os01t0149700-00
Chr01	irgsp1_rep	three_prime_UTR	2688460	2689032	.	-	.	Parent=Os01t0149700-00
Chr01	irgsp1_rep	mRNA	2688638	2691961	.	+	.	ID=Os01t0149750-00;Name=Os01t0149750-00;Locus_id=Os01g0149750;Note=Hypothetical protein.;Transcript_evidence=tplb0061a11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0149750-00
Chr01	irgsp1_rep	five_prime_UTR	2688638	2689032	.	+	.	Parent=Os01t0149750-00
Chr01	irgsp1_rep	five_prime_UTR	2689195	2691523	.	+	.	Parent=Os01t0149750-00
Chr01	irgsp1_rep	CDS	2691524	2691961	.	+	0	Parent=Os01t0149750-00
Chr01	irgsp1_rep	mRNA	2693231	2695079	.	-	.	ID=Os01t0149800-01;Name=Os01t0149800-01;Locus_id=Os01g0149800;CGSNL Gene Symbol=MT2A;CGSNL Gene Name=METALLOTHIONEIN 2A;Oryzabase Gene Symbol Synonym(s)=OsMT2a%2C MT2a%2C met6%2C Osmet6%2C OsMT-2%2C MT-2%2C rgMT-2%2C OsMT-I-2a%2C OsMT2-1%2C MT-I-2a%2C MT2-1;Oryzabase Gene Name Synonym(s)=Metallothionein 2a%2C type 2 metallothionein a%2C metallothionein 6%2C metallothionein-like gene-2%2C MT-like gene-2;Note=Metallothionein-like protein type 2.;Transcript_evidence=AK243576 (DDBJ%2C Best hit);ORF_evidence=Q60GN5 (UniProt);GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Metallothionein%2C family 15%2C plant (IPR000347);NIAS_FLcDNA=J100082H17;Oryzabase=11120;TENOR=Os01t0149800-01;KEGG=Os01t0149800-01
Chr01	irgsp1_rep	five_prime_UTR	2694973	2695079	.	-	.	Parent=Os01t0149800-01
Chr01	irgsp1_rep	CDS	2694908	2694972	.	-	0	Parent=Os01t0149800-01
Chr01	irgsp1_rep	CDS	2694246	2694323	.	-	1	Parent=Os01t0149800-01
Chr01	irgsp1_rep	CDS	2693529	2693634	.	-	1	Parent=Os01t0149800-01
Chr01	irgsp1_rep	three_prime_UTR	2693231	2693528	.	-	.	Parent=Os01t0149800-01
Chr01	irgsp1_rep	mRNA	2699128	2703491	.	-	.	ID=Os01t0149900-01;Name=Os01t0149900-01;Locus_id=Os01g0149900;Note=Conserved hypothetical protein.;Transcript_evidence=AK066489 (DDBJ%2C Best hit);ORF_evidence=B8ADA4 (UniProt);NIAS_FLcDNA=J013069K12;Expression=AK066489;TENOR=Os01t0149900-01;KEGG=Os01t0149900-01
Chr01	irgsp1_rep	five_prime_UTR	2703240	2703491	.	-	.	Parent=Os01t0149900-01
Chr01	irgsp1_rep	five_prime_UTR	2703065	2703157	.	-	.	Parent=Os01t0149900-01
Chr01	irgsp1_rep	CDS	2702908	2703064	.	-	0	Parent=Os01t0149900-01
Chr01	irgsp1_rep	CDS	2702183	2702259	.	-	2	Parent=Os01t0149900-01
Chr01	irgsp1_rep	CDS	2700321	2701641	.	-	0	Parent=Os01t0149900-01
Chr01	irgsp1_rep	CDS	2699347	2700020	.	-	2	Parent=Os01t0149900-01
Chr01	irgsp1_rep	three_prime_UTR	2699128	2699346	.	-	.	Parent=Os01t0149900-01
Chr01	irgsp1_rep	mRNA	2707624	2711422	.	-	.	ID=Os01t0150000-01;Name=Os01t0150000-01;Locus_id=Os01g0150000;CGSNL Gene Symbol=CER10;CGSNL Gene Name=ECERIFERUM 10;Oryzabase Gene Symbol Synonym(s)=OsCER10;Oryzabase Gene Name Synonym(s)=eceriferum10%2C eceriferum 10;Note=Similar to Synaptic glycoprotein SC2.;Transcript_evidence=AK066325 (DDBJ%2C Best hit);ORF_evidence=B6T423 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Cellular Component: cytoplasm (GO:0005737),Cellular Component: integral to membrane (GO:0016021),Molecular Function: oxidoreductase activity%2C acting on the CH-CH group of donors (GO:0016627);InterPro=3-oxo-5-alpha-steroid 4-dehydrogenase%2C C-terminal (IPR001104);NIAS_FLcDNA=J013062L06;Oryzabase=18135;TENOR=Os01t0150000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	2711268	2711422	.	-	.	Parent=Os01t0150000-01
Chr01	irgsp1_rep	five_prime_UTR	2708857	2711053	.	-	.	Parent=Os01t0150000-01
Chr01	irgsp1_rep	CDS	2708071	2708856	.	-	0	Parent=Os01t0150000-01
Chr01	irgsp1_rep	CDS	2707916	2707984	.	-	0	Parent=Os01t0150000-01
Chr01	irgsp1_rep	three_prime_UTR	2707624	2707915	.	-	.	Parent=Os01t0150000-01
Chr01	irgsp1_rep	mRNA	2707709	2711400	.	-	.	ID=Os01t0150000-02;Name=Os01t0150000-02;Locus_id=Os01g0150000;CGSNL Gene Symbol=CER10;CGSNL Gene Name=ECERIFERUM 10;Oryzabase Gene Symbol Synonym(s)=OsCER10;Oryzabase Gene Name Synonym(s)=eceriferum10%2C eceriferum 10;Note=3-oxo-5-alpha-steroid 4-dehydrogenase%2C C-terminal domain containing protein.;Transcript_evidence=AK060948 (DDBJ%2C Best hit);ORF_evidence=B6T423 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Cellular Component: cytoplasm (GO:0005737),Cellular Component: integral to membrane (GO:0016021),Molecular Function: oxidoreductase activity%2C acting on the CH-CH group of donors (GO:0016627);InterPro=3-oxo-5-alpha-steroid 4-dehydrogenase%2C C-terminal (IPR001104);NIAS_FLcDNA=006-201-F04;Oryzabase=18135;Expression=AK060948;TENOR=Os01t0150000-02;KEGG=Os01t0150000-02 (EC:1.3.1.-)
Chr01	irgsp1_rep	five_prime_UTR	2711337	2711400	.	-	.	Parent=Os01t0150000-02
Chr01	irgsp1_rep	CDS	2711268	2711336	.	-	0	Parent=Os01t0150000-02
Chr01	irgsp1_rep	CDS	2711014	2711053	.	-	0	Parent=Os01t0150000-02
Chr01	irgsp1_rep	CDS	2708071	2708825	.	-	2	Parent=Os01t0150000-02
Chr01	irgsp1_rep	CDS	2707916	2707984	.	-	0	Parent=Os01t0150000-02
Chr01	irgsp1_rep	three_prime_UTR	2707709	2707915	.	-	.	Parent=Os01t0150000-02
Chr01	irgsp1_rep	mRNA	2713300	2717425	.	+	.	ID=Os01t0150100-01;Name=Os01t0150100-01;Locus_id=Os01g0150100;Note=Similar to Geranylgeranyltransferase type I beta subunit.;Transcript_evidence=AK071085 (DDBJ%2C Best hit);ORF_evidence=Q6EMC1 (UniProt);InterPro=Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930);NIAS_FLcDNA=J023078H07;TENOR=Os01t0150100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	2713300	2713411	.	+	.	Parent=Os01t0150100-01
Chr01	irgsp1_rep	CDS	2713412	2713576	.	+	0	Parent=Os01t0150100-01
Chr01	irgsp1_rep	CDS	2714663	2714738	.	+	0	Parent=Os01t0150100-01
Chr01	irgsp1_rep	CDS	2714840	2714898	.	+	2	Parent=Os01t0150100-01
Chr01	irgsp1_rep	CDS	2715009	2715161	.	+	0	Parent=Os01t0150100-01
Chr01	irgsp1_rep	three_prime_UTR	2715162	2715908	.	+	.	Parent=Os01t0150100-01
Chr01	irgsp1_rep	three_prime_UTR	2716007	2716052	.	+	.	Parent=Os01t0150100-01
Chr01	irgsp1_rep	three_prime_UTR	2716221	2716345	.	+	.	Parent=Os01t0150100-01
Chr01	irgsp1_rep	three_prime_UTR	2716703	2716770	.	+	.	Parent=Os01t0150100-01
Chr01	irgsp1_rep	three_prime_UTR	2716865	2716952	.	+	.	Parent=Os01t0150100-01
Chr01	irgsp1_rep	three_prime_UTR	2717045	2717425	.	+	.	Parent=Os01t0150100-01
Chr01	irgsp1_rep	mRNA	2717836	2721076	.	+	.	ID=Os01t0150200-01;Name=Os01t0150200-01;Locus_id=Os01g0150200;Note=Protein-tyrosine phosphatase-like%2C PTPLA domain containing protein.;Transcript_evidence=AK099465 (DDBJ%2C Best hit);ORF_evidence=Q5ZEJ0 (UniProt);InterPro=Protein-tyrosine phosphatase-like%2C PTPLA (IPR007482);NIAS_FLcDNA=J013023K19;Expression=AK099465;TENOR=Os01t0150200-01;KEGG=Os01t0150200-01 (EC:4.2.1.-)
Chr01	irgsp1_rep	five_prime_UTR	2717836	2718103	.	+	.	Parent=Os01t0150200-01
Chr01	irgsp1_rep	CDS	2718104	2718174	.	+	0	Parent=Os01t0150200-01
Chr01	irgsp1_rep	CDS	2718266	2718377	.	+	1	Parent=Os01t0150200-01
Chr01	irgsp1_rep	CDS	2719233	2719251	.	+	0	Parent=Os01t0150200-01
Chr01	irgsp1_rep	CDS	2719519	2719607	.	+	2	Parent=Os01t0150200-01
Chr01	irgsp1_rep	CDS	2719997	2720050	.	+	0	Parent=Os01t0150200-01
Chr01	irgsp1_rep	CDS	2720201	2720271	.	+	0	Parent=Os01t0150200-01
Chr01	irgsp1_rep	CDS	2720375	2720456	.	+	1	Parent=Os01t0150200-01
Chr01	irgsp1_rep	CDS	2720561	2720657	.	+	0	Parent=Os01t0150200-01
Chr01	irgsp1_rep	CDS	2720778	2720848	.	+	2	Parent=Os01t0150200-01
Chr01	irgsp1_rep	three_prime_UTR	2720849	2721076	.	+	.	Parent=Os01t0150200-01
Chr01	irgsp1_rep	mRNA	2718042	2721203	.	+	.	ID=Os01t0150200-02;Name=Os01t0150200-02;Locus_id=Os01g0150200;Note=Protein-tyrosine phosphatase-like%2C PTPLA domain containing protein.;Transcript_evidence=AK060935 (DDBJ%2C Best hit);ORF_evidence=Q5ZEJ0 (UniProt);InterPro=Protein-tyrosine phosphatase-like%2C PTPLA (IPR007482);NIAS_FLcDNA=006-201-B11;Expression=AK060935;TENOR=Os01t0150200-02;KEGG=Os01t0150200-02 (EC:4.2.1.-)
Chr01	irgsp1_rep	five_prime_UTR	2718042	2718103	.	+	.	Parent=Os01t0150200-02
Chr01	irgsp1_rep	CDS	2718104	2718174	.	+	0	Parent=Os01t0150200-02
Chr01	irgsp1_rep	CDS	2718266	2718377	.	+	1	Parent=Os01t0150200-02
Chr01	irgsp1_rep	CDS	2719233	2719251	.	+	0	Parent=Os01t0150200-02
Chr01	irgsp1_rep	CDS	2719519	2719607	.	+	2	Parent=Os01t0150200-02
Chr01	irgsp1_rep	CDS	2719997	2720050	.	+	0	Parent=Os01t0150200-02
Chr01	irgsp1_rep	CDS	2720201	2720271	.	+	0	Parent=Os01t0150200-02
Chr01	irgsp1_rep	CDS	2720375	2720456	.	+	1	Parent=Os01t0150200-02
Chr01	irgsp1_rep	CDS	2720561	2720657	.	+	0	Parent=Os01t0150200-02
Chr01	irgsp1_rep	CDS	2720778	2720848	.	+	2	Parent=Os01t0150200-02
Chr01	irgsp1_rep	three_prime_UTR	2720849	2721203	.	+	.	Parent=Os01t0150200-02
Chr01	irgsp1_rep	mRNA	2722605	2726163	.	+	.	ID=Os01t0150400-00;Name=Os01t0150400-00;Locus_id=Os01g0150400;Note=Similar to 3-hydroxyacyl-CoA dehydratase PASTICCINO 2A.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XSZ4 (UniProt);InterPro=Protein-tyrosine phosphatase-like%2C PTPLA (IPR007482);TENOR=Os01t0150400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	2722605	2722735	.	+	0	Parent=Os01t0150400-00
Chr01	irgsp1_rep	CDS	2722828	2722939	.	+	1	Parent=Os01t0150400-00
Chr01	irgsp1_rep	CDS	2723814	2723867	.	+	0	Parent=Os01t0150400-00
Chr01	irgsp1_rep	CDS	2724077	2724186	.	+	0	Parent=Os01t0150400-00
Chr01	irgsp1_rep	CDS	2724313	2724394	.	+	1	Parent=Os01t0150400-00
Chr01	irgsp1_rep	CDS	2726017	2726163	.	+	0	Parent=Os01t0150400-00
Chr01	irgsp1_rep	mRNA	2727751	2736707	.	+	.	ID=Os01t0150500-00;Name=Os01t0150500-00;Locus_id=Os01g0150500;Note=Similar to 3-hydroxyacyl-CoA dehydratase PASTICCINO 2A.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XSZ4 (UniProt);InterPro=Protein-tyrosine phosphatase-like%2C PTPLA (IPR007482);TENOR=Os01t0150500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	2727751	2727822	.	+	0	Parent=Os01t0150500-00
Chr01	irgsp1_rep	CDS	2728084	2728205	.	+	0	Parent=Os01t0150500-00
Chr01	irgsp1_rep	CDS	2728470	2728587	.	+	1	Parent=Os01t0150500-00
Chr01	irgsp1_rep	CDS	2730310	2730380	.	+	0	Parent=Os01t0150500-00
Chr01	irgsp1_rep	CDS	2730504	2730585	.	+	1	Parent=Os01t0150500-00
Chr01	irgsp1_rep	CDS	2730678	2730774	.	+	0	Parent=Os01t0150500-00
Chr01	irgsp1_rep	CDS	2736604	2736707	.	+	2	Parent=Os01t0150500-00
Chr01	irgsp1_rep	mRNA	2731396	2736842	.	-	.	ID=Os01t0150700-00;Name=Os01t0150700-00;Locus_id=Os01g0150700;Note=Hypothetical conserved gene.;Transcript_evidence=AK068488 (DDBJ%2C Secondary hit);ORF_evidence=B8ADB0 (UniProt);Expression=AK068488;TENOR=Os01t0150700-00;KEGG=Os01t0150700-00
Chr01	irgsp1_rep	five_prime_UTR	2736698	2736842	.	-	.	Parent=Os01t0150700-00
Chr01	irgsp1_rep	CDS	2736467	2736697	.	-	0	Parent=Os01t0150700-00
Chr01	irgsp1_rep	three_prime_UTR	2735491	2736466	.	-	.	Parent=Os01t0150700-00
Chr01	irgsp1_rep	three_prime_UTR	2731396	2731563	.	-	.	Parent=Os01t0150700-00
Chr01	irgsp1_rep	mRNA	2742507	2747439	.	+	.	ID=Os01t0150800-01;Name=Os01t0150800-01;Locus_id=Os01g0150800;Note=Protein-tyrosine phosphatase-like%2C PTPLA domain containing protein.;Transcript_evidence=AK072612 (DDBJ%2C Best hit);ORF_evidence=Q7XSZ4 (UniProt);InterPro=Protein-tyrosine phosphatase-like%2C PTPLA (IPR007482);NIAS_FLcDNA=J023134L09;Expression=AK072612;TENOR=Os01t0150800-01;KEGG=Os01t0150800-01 (EC:4.2.1.-)
Chr01	irgsp1_rep	five_prime_UTR	2742507	2742857	.	+	.	Parent=Os01t0150800-01
Chr01	irgsp1_rep	CDS	2742858	2742875	.	+	0	Parent=Os01t0150800-01
Chr01	irgsp1_rep	CDS	2743021	2743085	.	+	0	Parent=Os01t0150800-01
Chr01	irgsp1_rep	CDS	2743221	2743332	.	+	1	Parent=Os01t0150800-01
Chr01	irgsp1_rep	CDS	2743486	2743504	.	+	0	Parent=Os01t0150800-01
Chr01	irgsp1_rep	CDS	2745797	2745885	.	+	2	Parent=Os01t0150800-01
Chr01	irgsp1_rep	CDS	2746238	2746291	.	+	0	Parent=Os01t0150800-01
Chr01	irgsp1_rep	CDS	2746517	2746587	.	+	0	Parent=Os01t0150800-01
Chr01	irgsp1_rep	CDS	2746704	2746785	.	+	1	Parent=Os01t0150800-01
Chr01	irgsp1_rep	CDS	2746880	2746976	.	+	0	Parent=Os01t0150800-01
Chr01	irgsp1_rep	CDS	2747134	2747204	.	+	2	Parent=Os01t0150800-01
Chr01	irgsp1_rep	three_prime_UTR	2747205	2747439	.	+	.	Parent=Os01t0150800-01
Chr01	irgsp1_rep	mRNA	2752144	2761554	.	+	.	ID=Os01t0150900-01;Name=Os01t0150900-01;Locus_id=Os01g0150900;Note=Conserved hypothetical protein.;Transcript_evidence=AK058767 (DDBJ%2C Best hit);ORF_evidence=NP_001175559.1 (RefSeq);NIAS_FLcDNA=001-001-D11;TENOR=Os01t0150900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	2752144	2752144	.	+	.	Parent=Os01t0150900-01
Chr01	irgsp1_rep	CDS	2752145	2752288	.	+	0	Parent=Os01t0150900-01
Chr01	irgsp1_rep	CDS	2752793	2752808	.	+	0	Parent=Os01t0150900-01
Chr01	irgsp1_rep	CDS	2761073	2761094	.	+	2	Parent=Os01t0150900-01
Chr01	irgsp1_rep	CDS	2761246	2761315	.	+	1	Parent=Os01t0150900-01
Chr01	irgsp1_rep	three_prime_UTR	2761316	2761554	.	+	.	Parent=Os01t0150900-01
Chr01	irgsp1_rep	mRNA	2753663	2755342	.	+	.	ID=Os01t0150950-00;Name=Os01t0150950-00;Locus_id=Os01g0150950;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0001l19 (Wheat FLcDNA);ORF_evidence=Q69Q45 (UniProt);TENOR=Os01t0150950-00
Chr01	irgsp1_rep	five_prime_UTR	2753663	2754009	.	+	.	Parent=Os01t0150950-00
Chr01	irgsp1_rep	five_prime_UTR	2754142	2754250	.	+	.	Parent=Os01t0150950-00
Chr01	irgsp1_rep	CDS	2754251	2755342	.	+	0	Parent=Os01t0150950-00
Chr01	irgsp1_rep	mRNA	2765779	2768602	.	+	.	ID=Os01t0151100-01;Name=Os01t0151100-01;Locus_id=Os01g0151100;Note=HSP20-like chaperone domain containing protein.;Transcript_evidence=AK120777 (DDBJ%2C Best hit);ORF_evidence=B6U1W7 (UniProt);NIAS_FLcDNA=J023009J05;Expression=AK120777;TENOR=Os01t0151100-01;KEGG=Os01t0151100-01
Chr01	irgsp1_rep	five_prime_UTR	2765779	2765924	.	+	.	Parent=Os01t0151100-01
Chr01	irgsp1_rep	five_prime_UTR	2766244	2766516	.	+	.	Parent=Os01t0151100-01
Chr01	irgsp1_rep	CDS	2766517	2768160	.	+	0	Parent=Os01t0151100-01
Chr01	irgsp1_rep	three_prime_UTR	2768161	2768602	.	+	.	Parent=Os01t0151100-01
Chr01	irgsp1_rep	mRNA	2770142	2774161	.	+	.	ID=Os01t0151200-01;Name=Os01t0151200-01;Locus_id=Os01g0151200;Note=Similar to Inner membrane protein ALBINO3%2C chloroplast precursor. Splice isoform 2.;Transcript_evidence=AK120558 (DDBJ%2C Best hit);ORF_evidence=NP_001150593.1 (RefSeq);GO=Biological Process: protein insertion into membrane (GO:0051205),Cellular Component: integral to membrane (GO:0016021);InterPro=Membrane insertion protein%2C OxaA/YidC (IPR001708);NIAS_FLcDNA=J013131K08;Expression=AK120558;TENOR=Os01t0151200-01;KEGG=Os01t0151200-01
Chr01	irgsp1_rep	five_prime_UTR	2770142	2770294	.	+	.	Parent=Os01t0151200-01
Chr01	irgsp1_rep	CDS	2770295	2770660	.	+	0	Parent=Os01t0151200-01
Chr01	irgsp1_rep	CDS	2771082	2771192	.	+	0	Parent=Os01t0151200-01
Chr01	irgsp1_rep	CDS	2771284	2771358	.	+	0	Parent=Os01t0151200-01
Chr01	irgsp1_rep	CDS	2771566	2771626	.	+	0	Parent=Os01t0151200-01
Chr01	irgsp1_rep	CDS	2771853	2771926	.	+	2	Parent=Os01t0151200-01
Chr01	irgsp1_rep	CDS	2772004	2772108	.	+	0	Parent=Os01t0151200-01
Chr01	irgsp1_rep	CDS	2772475	2772582	.	+	0	Parent=Os01t0151200-01
Chr01	irgsp1_rep	CDS	2772681	2772784	.	+	0	Parent=Os01t0151200-01
Chr01	irgsp1_rep	CDS	2772939	2773088	.	+	1	Parent=Os01t0151200-01
Chr01	irgsp1_rep	CDS	2773163	2773286	.	+	1	Parent=Os01t0151200-01
Chr01	irgsp1_rep	CDS	2773438	2773539	.	+	0	Parent=Os01t0151200-01
Chr01	irgsp1_rep	three_prime_UTR	2773540	2773580	.	+	.	Parent=Os01t0151200-01
Chr01	irgsp1_rep	three_prime_UTR	2773746	2774161	.	+	.	Parent=Os01t0151200-01
Chr01	irgsp1_rep	mRNA	2771564	2774100	.	+	.	ID=Os01t0151200-02;Name=Os01t0151200-02;Locus_id=Os01g0151200;Note=Similar to inner membrane protein ALBINO3.;Transcript_evidence=AK060590 (DDBJ%2C Best hit);ORF_evidence=NP_001150593.1 (RefSeq);GO=Biological Process: protein insertion into membrane (GO:0051205),Cellular Component: integral to membrane (GO:0016021);InterPro=Membrane insertion protein%2C OxaA/YidC (IPR001708);NIAS_FLcDNA=001-024-D09;Expression=AK060590;TENOR=Os01t0151200-02;KEGG=Os01t0151200-02
Chr01	irgsp1_rep	five_prime_UTR	2771564	2771565	.	+	.	Parent=Os01t0151200-02
Chr01	irgsp1_rep	CDS	2771566	2771626	.	+	0	Parent=Os01t0151200-02
Chr01	irgsp1_rep	CDS	2771853	2771926	.	+	2	Parent=Os01t0151200-02
Chr01	irgsp1_rep	CDS	2772004	2772108	.	+	0	Parent=Os01t0151200-02
Chr01	irgsp1_rep	CDS	2772475	2772582	.	+	0	Parent=Os01t0151200-02
Chr01	irgsp1_rep	CDS	2772681	2772742	.	+	0	Parent=Os01t0151200-02
Chr01	irgsp1_rep	CDS	2773049	2773054	.	+	1	Parent=Os01t0151200-02
Chr01	irgsp1_rep	CDS	2773062	2773088	.	+	1	Parent=Os01t0151200-02
Chr01	irgsp1_rep	CDS	2773163	2773286	.	+	1	Parent=Os01t0151200-02
Chr01	irgsp1_rep	CDS	2773438	2773539	.	+	0	Parent=Os01t0151200-02
Chr01	irgsp1_rep	three_prime_UTR	2773540	2773580	.	+	.	Parent=Os01t0151200-02
Chr01	irgsp1_rep	three_prime_UTR	2773746	2774100	.	+	.	Parent=Os01t0151200-02
Chr01	irgsp1_rep	mRNA	2772941	2774609	.	+	.	ID=Os01t0151200-03;Name=Os01t0151200-03;Locus_id=Os01g0151200;Note=Similar to inner membrane protein ALBINO3.;Transcript_evidence=AK110801 (DDBJ%2C Best hit);ORF_evidence=NP_001150593.1 (RefSeq);GO=Biological Process: protein insertion into membrane (GO:0051205),Cellular Component: integral to membrane (GO:0016021);InterPro=Membrane insertion protein%2C OxaA/YidC (IPR001708);NIAS_FLcDNA=002-171-E07;Expression=AK110801;TENOR=Os01t0151200-03;KEGG=Os01t0151200-03
Chr01	irgsp1_rep	five_prime_UTR	2772941	2772942	.	+	.	Parent=Os01t0151200-03
Chr01	irgsp1_rep	CDS	2772943	2773088	.	+	0	Parent=Os01t0151200-03
Chr01	irgsp1_rep	CDS	2773163	2773286	.	+	1	Parent=Os01t0151200-03
Chr01	irgsp1_rep	CDS	2773438	2773539	.	+	0	Parent=Os01t0151200-03
Chr01	irgsp1_rep	three_prime_UTR	2773540	2773580	.	+	.	Parent=Os01t0151200-03
Chr01	irgsp1_rep	three_prime_UTR	2773746	2774609	.	+	.	Parent=Os01t0151200-03
Chr01	irgsp1_rep	mRNA	2776973	2781723	.	+	.	ID=Os01t0151400-01;Name=Os01t0151400-01;Locus_id=Os01g0151400;Note=Similar to Gamma-glutamyl transferase.;Transcript_evidence=AK120703 (DDBJ%2C Best hit);ORF_evidence=Q6L610 (UniProt);GO=Molecular Function: gamma-glutamyltransferase activity (GO:0003840);InterPro=Gamma-glutamyltranspeptidase (IPR000101);NIAS_FLcDNA=J013170P19;TENOR=Os01t0151400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	2776973	2777566	.	+	.	Parent=Os01t0151400-01
Chr01	irgsp1_rep	five_prime_UTR	2779211	2779729	.	+	.	Parent=Os01t0151400-01
Chr01	irgsp1_rep	five_prime_UTR	2779813	2780048	.	+	.	Parent=Os01t0151400-01
Chr01	irgsp1_rep	five_prime_UTR	2780135	2780152	.	+	.	Parent=Os01t0151400-01
Chr01	irgsp1_rep	CDS	2780153	2780154	.	+	0	Parent=Os01t0151400-01
Chr01	irgsp1_rep	CDS	2780180	2780397	.	+	1	Parent=Os01t0151400-01
Chr01	irgsp1_rep	CDS	2780482	2780619	.	+	2	Parent=Os01t0151400-01
Chr01	irgsp1_rep	CDS	2781056	2781330	.	+	2	Parent=Os01t0151400-01
Chr01	irgsp1_rep	three_prime_UTR	2781331	2781723	.	+	.	Parent=Os01t0151400-01
Chr01	irgsp1_rep	mRNA	2783189	2790377	.	+	.	ID=Os01t0151500-00;Name=Os01t0151500-00;Locus_id=Os01g0151500;Note=Similar to GGT4 (GAMMA-GLUTAMYL TRANSPEPTIDASE 4)%3B gamma-glutamyltransferase/ glutathione gamma-glutamylcysteinyltransferase.;Transcript_evidence=AK371823 (DDBJ);ORF_evidence=NP_974636.1 (RefSeq);GO=Molecular Function: gamma-glutamyltransferase activity (GO:0003840);InterPro=Gamma-glutamyltranspeptidase (IPR000101);TENOR=Os01t0151500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	2783189	2783650	.	+	0	Parent=Os01t0151500-00
Chr01	irgsp1_rep	CDS	2788172	2788690	.	+	0	Parent=Os01t0151500-00
Chr01	irgsp1_rep	CDS	2788780	2789015	.	+	0	Parent=Os01t0151500-00
Chr01	irgsp1_rep	CDS	2789110	2789387	.	+	1	Parent=Os01t0151500-00
Chr01	irgsp1_rep	CDS	2789491	2789629	.	+	2	Parent=Os01t0151500-00
Chr01	irgsp1_rep	CDS	2790215	2790233	.	+	1	Parent=Os01t0151500-00
Chr01	irgsp1_rep	three_prime_UTR	2790234	2790377	.	+	.	Parent=Os01t0151500-00
Chr01	irgsp1_rep	mRNA	2791418	2795857	.	+	.	ID=Os01t0151600-01;Name=Os01t0151600-01;Locus_id=Os01g0151600;Note=Conserved hypothetical protein.;Transcript_evidence=AK063435 (DDBJ%2C Best hit);ORF_evidence=B8ADB9 (UniProt);NIAS_FLcDNA=001-115-E04;Expression=AK063435;TENOR=Os01t0151600-01;KEGG=Os01t0151600-01
Chr01	irgsp1_rep	five_prime_UTR	2791418	2791468	.	+	.	Parent=Os01t0151600-01
Chr01	irgsp1_rep	CDS	2791469	2791534	.	+	0	Parent=Os01t0151600-01
Chr01	irgsp1_rep	CDS	2792089	2792173	.	+	0	Parent=Os01t0151600-01
Chr01	irgsp1_rep	CDS	2792921	2793117	.	+	2	Parent=Os01t0151600-01
Chr01	irgsp1_rep	CDS	2793601	2793683	.	+	0	Parent=Os01t0151600-01
Chr01	irgsp1_rep	CDS	2793829	2793874	.	+	1	Parent=Os01t0151600-01
Chr01	irgsp1_rep	CDS	2793969	2794025	.	+	0	Parent=Os01t0151600-01
Chr01	irgsp1_rep	CDS	2794118	2794172	.	+	0	Parent=Os01t0151600-01
Chr01	irgsp1_rep	CDS	2794244	2794344	.	+	2	Parent=Os01t0151600-01
Chr01	irgsp1_rep	CDS	2794432	2794495	.	+	0	Parent=Os01t0151600-01
Chr01	irgsp1_rep	CDS	2794604	2794737	.	+	2	Parent=Os01t0151600-01
Chr01	irgsp1_rep	CDS	2795158	2795346	.	+	0	Parent=Os01t0151600-01
Chr01	irgsp1_rep	three_prime_UTR	2795347	2795857	.	+	.	Parent=Os01t0151600-01
Chr01	irgsp1_rep	mRNA	2800516	2803701	.	+	.	ID=Os01t0151700-01;Name=Os01t0151700-01;Locus_id=Os01g0151700;Note=Similar to Short-chain dehydrogenase Tic32.;Transcript_evidence=AK099949 (DDBJ%2C Best hit);ORF_evidence=B6TTG8 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013123E12;Expression=AK099949;TENOR=Os01t0151700-01;KEGG=Os01t0151700-01
Chr01	irgsp1_rep	five_prime_UTR	2800516	2800747	.	+	.	Parent=Os01t0151700-01
Chr01	irgsp1_rep	CDS	2800748	2800865	.	+	0	Parent=Os01t0151700-01
Chr01	irgsp1_rep	CDS	2801890	2802121	.	+	2	Parent=Os01t0151700-01
Chr01	irgsp1_rep	CDS	2802242	2802321	.	+	1	Parent=Os01t0151700-01
Chr01	irgsp1_rep	CDS	2802417	2802570	.	+	2	Parent=Os01t0151700-01
Chr01	irgsp1_rep	CDS	2802655	2802733	.	+	1	Parent=Os01t0151700-01
Chr01	irgsp1_rep	CDS	2802900	2802984	.	+	0	Parent=Os01t0151700-01
Chr01	irgsp1_rep	CDS	2803121	2803167	.	+	2	Parent=Os01t0151700-01
Chr01	irgsp1_rep	CDS	2803301	2803471	.	+	0	Parent=Os01t0151700-01
Chr01	irgsp1_rep	three_prime_UTR	2803472	2803701	.	+	.	Parent=Os01t0151700-01
Chr01	irgsp1_rep	mRNA	2801825	2802125	.	-	.	ID=Os01t0151750-00;Name=Os01t0151750-00;Locus_id=Os01g0151750;Note=Hypothetical conserved gene.;Transcript_evidence=EU974518 (DDBJ);ORF_evidence=B6SH37 (UniProt);TENOR=Os01t0151750-00;KEGG=Os01t0151750-00
Chr01	irgsp1_rep	five_prime_UTR	2802023	2802125	.	-	.	Parent=Os01t0151750-00
Chr01	irgsp1_rep	CDS	2801843	2802022	.	-	0	Parent=Os01t0151750-00
Chr01	irgsp1_rep	three_prime_UTR	2801825	2801842	.	-	.	Parent=Os01t0151750-00
Chr01	irgsp1_rep	mRNA	2805586	2808152	.	+	.	ID=Os01t0151900-01;Name=Os01t0151900-01;Locus_id=Os01g0151900;Oryzabase Gene Name Synonym(s)=PPR repeat domain-containing protein;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK241784 (DDBJ%2C Best hit);ORF_evidence=NP_001148062.1 (RefSeq);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J065206N09;Oryzabase=22721;TENOR=Os01t0151900-01;KEGG=Os01t0151900-01
Chr01	irgsp1_rep	five_prime_UTR	2805586	2805639	.	+	.	Parent=Os01t0151900-01
Chr01	irgsp1_rep	CDS	2805640	2805703	.	+	0	Parent=Os01t0151900-01
Chr01	irgsp1_rep	CDS	2805911	2807451	.	+	2	Parent=Os01t0151900-01
Chr01	irgsp1_rep	three_prime_UTR	2807452	2808152	.	+	.	Parent=Os01t0151900-01
Chr01	irgsp1_rep	mRNA	2810313	2815017	.	+	.	ID=Os01t0152000-01;Name=Os01t0152000-01;Locus_id=Os01g0152000;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK103666 (DDBJ%2C Best hit);ORF_evidence=NP_001042048.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033135J23;Expression=AK103666;TENOR=Os01t0152000-01;KEGG=Os01t0152000-01
Chr01	irgsp1_rep	five_prime_UTR	2810313	2810583	.	+	.	Parent=Os01t0152000-01
Chr01	irgsp1_rep	five_prime_UTR	2810704	2811339	.	+	.	Parent=Os01t0152000-01
Chr01	irgsp1_rep	CDS	2811340	2814112	.	+	0	Parent=Os01t0152000-01
Chr01	irgsp1_rep	CDS	2814213	2814637	.	+	2	Parent=Os01t0152000-01
Chr01	irgsp1_rep	three_prime_UTR	2814638	2815017	.	+	.	Parent=Os01t0152000-01
Chr01	irgsp1_rep	mRNA	2811498	2819553	.	-	.	ID=Os01t0152050-00;Name=Os01t0152050-00;Locus_id=Os01g0152050;Note=Hypothetical protein.;Transcript_evidence=tplb0061a11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0152050-00
Chr01	irgsp1_rep	five_prime_UTR	2819130	2819553	.	-	.	Parent=Os01t0152050-00
Chr01	irgsp1_rep	five_prime_UTR	2813106	2814129	.	-	.	Parent=Os01t0152050-00
Chr01	irgsp1_rep	CDS	2812776	2813105	.	-	0	Parent=Os01t0152050-00
Chr01	irgsp1_rep	three_prime_UTR	2811498	2812775	.	-	.	Parent=Os01t0152050-00
Chr01	irgsp1_rep	mRNA	2815148	2816554	.	-	.	ID=Os01t0152100-00;Name=Os01t0152100-00;Locus_id=Os01g0152100;Oryzabase Gene Symbol Synonym(s)=OsFbox001%2C OsFbox1%2C Os_F0615%2C OsFBX1;Oryzabase Gene Name Synonym(s)=F-box protein 1;Note=F-box domain%2C Skp2-like domain containing protein.;Transcript_evidence=EU970433 (DDBJ);ORF_evidence=Q5ZD76 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);Oryzabase=16804;TENOR=Os01t0152100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	2815175	2816554	.	-	0	Parent=Os01t0152100-00
Chr01	irgsp1_rep	three_prime_UTR	2815148	2815174	.	-	.	Parent=Os01t0152100-00
Chr01	irgsp1_rep	mRNA	2817650	2818897	.	-	.	ID=Os01t0152200-00;Name=Os01t0152200-00;Locus_id=Os01g0152200;Oryzabase Gene Symbol Synonym(s)=Os_F0739%2C OsFBX2;Note=F-box domain%2C Skp2-like domain containing protein.;Transcript_evidence=EU970433 (DDBJ);ORF_evidence=Q9LGI3 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);Oryzabase=17439;TENOR=Os01t0152200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	2817650	2818897	.	-	0	Parent=Os01t0152200-00
Chr01	irgsp1_rep	mRNA	2820074	2820744	.	-	.	ID=Os01t0152300-00;Name=Os01t0152300-00;Locus_id=Os01g0152300;Note=Similar to Histone H2B.1.;Transcript_evidence=CT828154 (DDBJ%2C Best hit);ORF_evidence=B9A1G8 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H2B (IPR000558),Histone core (IPR007125),Histone-fold (IPR009072);TENOR=Os01t0152300-00;KEGG=Os01t0152300-00
Chr01	irgsp1_rep	five_prime_UTR	2820697	2820744	.	-	.	Parent=Os01t0152300-00
Chr01	irgsp1_rep	CDS	2820235	2820696	.	-	0	Parent=Os01t0152300-00
Chr01	irgsp1_rep	three_prime_UTR	2820074	2820234	.	-	.	Parent=Os01t0152300-00
Chr01	irgsp1_rep	mRNA	2826116	2828930	.	-	.	ID=Os01t0152500-00;Name=Os01t0152500-00;Locus_id=Os01g0152500;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5ZD68 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527),Zinc finger%2C CCHC retroviral-type (IPR013084);TENOR=Os01t0152500-00;KEGG=Os01t0152500-00
Chr01	irgsp1_rep	CDS	2828157	2828930	.	-	0	Parent=Os01t0152500-00
Chr01	irgsp1_rep	CDS	2827904	2828065	.	-	0	Parent=Os01t0152500-00
Chr01	irgsp1_rep	CDS	2827725	2827820	.	-	0	Parent=Os01t0152500-00
Chr01	irgsp1_rep	CDS	2826991	2827638	.	-	0	Parent=Os01t0152500-00
Chr01	irgsp1_rep	CDS	2826116	2826730	.	-	0	Parent=Os01t0152500-00
Chr01	irgsp1_rep	mRNA	2830325	2833623	.	+	.	ID=Os01t0152600-00;Name=Os01t0152600-00;Locus_id=Os01g0152600;CGSNL Gene Symbol=RLCK24;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 24;Oryzabase Gene Symbol Synonym(s)=OsRLCK24;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 24;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q9LGH9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);Oryzabase=18744;TENOR=Os01t0152600-00
Chr01	irgsp1_rep	CDS	2830325	2833076	.	+	0	Parent=Os01t0152600-00
Chr01	irgsp1_rep	CDS	2833223	2833623	.	+	2	Parent=Os01t0152600-00
Chr01	irgsp1_rep	mRNA	2835247	2835730	.	-	.	ID=Os01t0152675-00;Name=Os01t0152675-00;Locus_id=Os01g0152675;Note=Non-protein coding transcript.;Transcript_evidence=EU949002 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0152675-00
Chr01	irgsp1_rep	exon	2835247	2835730	.	-	.	Parent=Os01t0152675-00
Chr01	irgsp1_rep	mRNA	2835281	2836233	.	+	.	ID=Os01t0152687-00;Name=Os01t0152687-00;Locus_id=Os01g0152687;CGSNL Gene Symbol=RLCK24;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 24;Oryzabase Gene Symbol Synonym(s)=OsRLCK24;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 24;Note=Serine-threonine/tyrosine-protein kinase domain containing protein.;Transcript_evidence=EU423905 (DDBJ);ORF_evidence=A2WKP6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009);Oryzabase=18744;TENOR=Os01t0152687-00
Chr01	irgsp1_rep	five_prime_UTR	2835281	2835291	.	+	.	Parent=Os01t0152687-00
Chr01	irgsp1_rep	CDS	2835292	2835597	.	+	0	Parent=Os01t0152687-00
Chr01	irgsp1_rep	three_prime_UTR	2835598	2835883	.	+	.	Parent=Os01t0152687-00
Chr01	irgsp1_rep	three_prime_UTR	2836025	2836233	.	+	.	Parent=Os01t0152687-00
Chr01	irgsp1_rep	mRNA	2837892	2838171	.	-	.	ID=Os01t0152700-01;Name=Os01t0152700-01;Locus_id=Os01g0152700;Note=Similar to Histone H2B (CaH2B).;Transcript_evidence=AK059159 (DDBJ%2C Best hit);ORF_evidence=NP_200799.1 (RefSeq);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H2B (IPR000558),Histone-fold (IPR009072);NIAS_FLcDNA=001-023-D03;Expression=AK059159;TENOR=Os01t0152700-01;KEGG=Os01t0152700-01
Chr01	irgsp1_rep	CDS	2838046	2838171	.	-	0	Parent=Os01t0152700-01
Chr01	irgsp1_rep	three_prime_UTR	2837892	2838045	.	-	.	Parent=Os01t0152700-01
Chr01	irgsp1_rep	mRNA	2839934	2843512	.	+	.	ID=Os01t0152800-01;Name=Os01t0152800-01;Locus_id=Os01g0152800;CGSNL Gene Symbol=RLCK25;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 25;Oryzabase Gene Symbol Synonym(s)=OsRLCK25;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 25;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK102745 (DDBJ%2C Best hit);ORF_evidence=A2WKS7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033106J03;Oryzabase=18223;Expression=AK102745;TENOR=Os01t0152800-01;KEGG=Os01t0152800-01
Chr01	irgsp1_rep	five_prime_UTR	2839934	2839978	.	+	.	Parent=Os01t0152800-01
Chr01	irgsp1_rep	CDS	2839979	2842745	.	+	0	Parent=Os01t0152800-01
Chr01	irgsp1_rep	CDS	2842897	2843285	.	+	2	Parent=Os01t0152800-01
Chr01	irgsp1_rep	three_prime_UTR	2843286	2843512	.	+	.	Parent=Os01t0152800-01
Chr01	irgsp1_rep	mRNA	2840037	2843293	.	-	.	ID=Os01t0152850-00;Name=Os01t0152850-00;Locus_id=Os01g0152850;Note=Hypothetical protein.;Transcript_evidence=tplb0061a11 (Wheat FLcDNA);ORF_evidence=GeneMark;TENOR=Os01t0152850-00
Chr01	irgsp1_rep	five_prime_UTR	2842892	2843293	.	-	.	Parent=Os01t0152850-00
Chr01	irgsp1_rep	five_prime_UTR	2840470	2842740	.	-	.	Parent=Os01t0152850-00
Chr01	irgsp1_rep	CDS	2840037	2840469	.	-	0	Parent=Os01t0152850-00
Chr01	irgsp1_rep	mRNA	2844503	2845212	.	-	.	ID=Os01t0152900-00;Name=Os01t0152900-00;Locus_id=Os01g0152900;Oryzabase Gene Symbol Synonym(s)=H2B.7;Oryzabase Gene Name Synonym(s)=histone H2B.7;Note=Similar to Histone H2B.1.;Transcript_evidence=CT837552 (DDBJ%2C Best hit);ORF_evidence=B9A1G8 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H2B (IPR000558),Histone core (IPR007125),Histone-fold (IPR009072);Oryzabase=19923;TENOR=Os01t0152900-00;KEGG=Os01t0152900-00
Chr01	irgsp1_rep	five_prime_UTR	2845121	2845212	.	-	.	Parent=Os01t0152900-00
Chr01	irgsp1_rep	CDS	2844659	2845120	.	-	0	Parent=Os01t0152900-00
Chr01	irgsp1_rep	three_prime_UTR	2844503	2844658	.	-	.	Parent=Os01t0152900-00
Chr01	irgsp1_rep	mRNA	2847554	2848849	.	-	.	ID=Os01t0152950-00;Name=Os01t0152950-00;Locus_id=Os01g0152950;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=EU970433 (DDBJ);ORF_evidence=NP_001172187.1 (RefSeq);InterPro=F-box domain%2C Skp2-like (IPR022364);TENOR=Os01t0152950-00;KEGG=Os01t0152950-00
Chr01	irgsp1_rep	CDS	2847554	2848849	.	-	0	Parent=Os01t0152950-00
Chr01	irgsp1_rep	mRNA	2849160	2851689	.	+	.	ID=Os01t0152951-00;Name=Os01t0152951-00;Locus_id=Os01g0152951;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5ZD74 (UniProt);TENOR=Os01t0152951-00;KEGG=Os01t0152951-00
Chr01	irgsp1_rep	CDS	2849160	2849246	.	+	0	Parent=Os01t0152951-00
Chr01	irgsp1_rep	CDS	2849824	2849974	.	+	0	Parent=Os01t0152951-00
Chr01	irgsp1_rep	CDS	2851445	2851689	.	+	2	Parent=Os01t0152951-00
Chr01	irgsp1_rep	mRNA	2851954	2855225	.	+	.	ID=Os01t0153000-00;Name=Os01t0153000-00;Locus_id=Os01g0153000;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q9LGH5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os01t0153000-00
Chr01	irgsp1_rep	CDS	2851954	2854675	.	+	0	Parent=Os01t0153000-00
Chr01	irgsp1_rep	CDS	2854819	2855225	.	+	2	Parent=Os01t0153000-00
Chr01	irgsp1_rep	mRNA	2851988	2855214	.	-	.	ID=Os01t0153050-00;Name=Os01t0153050-00;Locus_id=Os01g0153050;Note=Hypothetical protein.;Transcript_evidence=tplb0061a11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0153050-00
Chr01	irgsp1_rep	five_prime_UTR	2854817	2855214	.	-	.	Parent=Os01t0153050-00
Chr01	irgsp1_rep	five_prime_UTR	2852910	2854673	.	-	.	Parent=Os01t0153050-00
Chr01	irgsp1_rep	CDS	2852373	2852909	.	-	0	Parent=Os01t0153050-00
Chr01	irgsp1_rep	three_prime_UTR	2851988	2852372	.	-	.	Parent=Os01t0153050-00
Chr01	irgsp1_rep	mRNA	2857382	2858128	.	-	.	ID=Os01t0153100-00;Name=Os01t0153100-00;Locus_id=Os01g0153100;Oryzabase Gene Symbol Synonym(s)=OsFbox002%2C OsFbox2;Oryzabase Gene Name Synonym(s)=F-box protein 2;Note=Similar to Histone H2B-3 (Fragment).;Transcript_evidence=CT828153 (DDBJ%2C Best hit);ORF_evidence=Q9LGH8 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H2B (IPR000558),Histone core (IPR007125),Histone-fold (IPR009072);Oryzabase=16805;TENOR=Os01t0153100-00;KEGG=Os01t0153100-00
Chr01	irgsp1_rep	five_prime_UTR	2858060	2858128	.	-	.	Parent=Os01t0153100-00
Chr01	irgsp1_rep	CDS	2857598	2858059	.	-	0	Parent=Os01t0153100-00
Chr01	irgsp1_rep	three_prime_UTR	2857382	2857597	.	-	.	Parent=Os01t0153100-00
Chr01	irgsp1_rep	mRNA	2859098	2864539	.	+	.	ID=Os01t0153150-01;Name=Os01t0153150-01;Locus_id=Os01g0153150;Note=Hypothetical conserved gene.;Transcript_evidence=AK288703 (DDBJ%2C Best hit);ORF_evidence=A2WKT2 (UniProt);NIAS_FLcDNA=J090061G13;TENOR=Os01t0153150-01;KEGG=Os01t0153150-01
Chr01	irgsp1_rep	five_prime_UTR	2859098	2860983	.	+	.	Parent=Os01t0153150-01
Chr01	irgsp1_rep	CDS	2860984	2861223	.	+	0	Parent=Os01t0153150-01
Chr01	irgsp1_rep	three_prime_UTR	2861224	2864539	.	+	.	Parent=Os01t0153150-01
Chr01	irgsp1_rep	mRNA	2862774	2863569	.	-	.	ID=Os01t0153200-00;Name=Os01t0153200-00;Locus_id=Os01g0153200;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A2ZPD5 (UniProt);TENOR=Os01t0153200-00;KEGG=Os01t0153200-00
Chr01	irgsp1_rep	CDS	2863526	2863569	.	-	0	Parent=Os01t0153200-00
Chr01	irgsp1_rep	CDS	2863232	2863391	.	-	1	Parent=Os01t0153200-00
Chr01	irgsp1_rep	CDS	2862774	2862914	.	-	0	Parent=Os01t0153200-00
Chr01	irgsp1_rep	mRNA	2864276	2867341	.	-	.	ID=Os01t0153250-00;Name=Os01t0153250-00;Locus_id=Os01g0153250;Note=Hypothetical conserved gene.;Transcript_evidence=EU944109 (DDBJ);ORF_evidence=Q94JE2 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os01t0153250-00;KEGG=Os01t0153250-00
Chr01	irgsp1_rep	CDS	2864612	2867341	.	-	0	Parent=Os01t0153250-00
Chr01	irgsp1_rep	three_prime_UTR	2864276	2864611	.	-	.	Parent=Os01t0153250-00
Chr01	irgsp1_rep	mRNA	2864726	2867411	.	+	.	ID=Os01t0153275-00;Name=Os01t0153275-00;Locus_id=Os01g0153275;Note=Hypothetical protein.;Transcript_evidence=tplb0060h10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0153275-00
Chr01	irgsp1_rep	five_prime_UTR	2864726	2866803	.	+	.	Parent=Os01t0153275-00
Chr01	irgsp1_rep	CDS	2866804	2867268	.	+	0	Parent=Os01t0153275-00
Chr01	irgsp1_rep	three_prime_UTR	2867269	2867411	.	+	.	Parent=Os01t0153275-00
Chr01	irgsp1_rep	mRNA	2872115	2872826	.	+	.	ID=Os01t0153300-00;Name=Os01t0153300-00;Locus_id=Os01g0153300;Note=Similar to Histone H2B.1.;Transcript_evidence=CT837551 (DDBJ%2C Best hit);ORF_evidence=B9FIG2 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H2B (IPR000558),Histone core (IPR007125),Histone-fold (IPR009072);TENOR=Os01t0153300-00;KEGG=Os01t0153300-00
Chr01	irgsp1_rep	five_prime_UTR	2872115	2872187	.	+	.	Parent=Os01t0153300-00
Chr01	irgsp1_rep	CDS	2872188	2872655	.	+	0	Parent=Os01t0153300-00
Chr01	irgsp1_rep	three_prime_UTR	2872656	2872826	.	+	.	Parent=Os01t0153300-00
Chr01	irgsp1_rep	mRNA	2877647	2882523	.	+	.	ID=Os01t0153400-01;Name=Os01t0153400-01;Locus_id=Os01g0153400;Note=Similar to tRNA synthetase class II (D%2C K and N) family protein.;Transcript_evidence=AK059454 (DDBJ%2C Best hit);ORF_evidence=NP_195102.2 (RefSeq);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: ATP binding (GO:0005524),Molecular Function: ligase activity (GO:0016874);InterPro=Aspartyl/Asparaginyl-tRNA synthetase%2C class IIb (IPR002312),GAD domain (IPR004115),Aminoacyl-tRNA synthetase%2C class II (D/K/N) (IPR004364),Aspartyl-tRNA synthetase%2C class IIb%2C bacterial/mitochondrial-type (IPR004524),Aminoacyl-tRNA synthetase%2C class II (IPR006195),Aminoacyl-tRNA synthetase%2C class II (D/K/N)-like (IPR018150);NIAS_FLcDNA=001-028-B12;TENOR=Os01t0153400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	2877647	2877696	.	+	0	Parent=Os01t0153400-01
Chr01	irgsp1_rep	CDS	2878116	2878236	.	+	1	Parent=Os01t0153400-01
Chr01	irgsp1_rep	CDS	2878712	2878834	.	+	0	Parent=Os01t0153400-01
Chr01	irgsp1_rep	CDS	2878935	2879130	.	+	0	Parent=Os01t0153400-01
Chr01	irgsp1_rep	CDS	2879221	2879408	.	+	2	Parent=Os01t0153400-01
Chr01	irgsp1_rep	CDS	2879553	2879624	.	+	0	Parent=Os01t0153400-01
Chr01	irgsp1_rep	CDS	2880336	2880434	.	+	0	Parent=Os01t0153400-01
Chr01	irgsp1_rep	CDS	2881027	2881107	.	+	0	Parent=Os01t0153400-01
Chr01	irgsp1_rep	CDS	2881730	2881787	.	+	0	Parent=Os01t0153400-01
Chr01	irgsp1_rep	CDS	2882181	2882347	.	+	2	Parent=Os01t0153400-01
Chr01	irgsp1_rep	three_prime_UTR	2882348	2882523	.	+	.	Parent=Os01t0153400-01
Chr01	irgsp1_rep	mRNA	2885392	2886301	.	+	.	ID=Os01t0153500-00;Name=Os01t0153500-00;Locus_id=Os01g0153500;Note=Protein of unknown function DUF674 domain containing protein.;Transcript_evidence=FP098916 (DDBJ);ORF_evidence=NP_001042055.1 (RefSeq);InterPro=Protein of unknown function DUF674 (IPR007750);TENOR=Os01t0153500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	2885392	2885424	.	+	.	Parent=Os01t0153500-00
Chr01	irgsp1_rep	CDS	2885425	2886069	.	+	0	Parent=Os01t0153500-00
Chr01	irgsp1_rep	CDS	2886215	2886301	.	+	0	Parent=Os01t0153500-00
Chr01	irgsp1_rep	mRNA	2885449	2886073	.	-	.	ID=Os01t0153550-00;Name=Os01t0153550-00;Locus_id=Os01g0153550;Note=Hypothetical protein.;Transcript_evidence=BT085097 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0153550-00
Chr01	irgsp1_rep	five_prime_UTR	2886073	2886073	.	-	.	Parent=Os01t0153550-00
Chr01	irgsp1_rep	CDS	2885449	2886072	.	-	0	Parent=Os01t0153550-00
Chr01	irgsp1_rep	mRNA	2887060	2888434	.	-	.	ID=Os01t0153600-00;Name=Os01t0153600-00;Locus_id=Os01g0153600;Note=Protein of unknown function DUF674 domain containing protein.;Transcript_evidence=FP098916 (DDBJ);ORF_evidence=Q5ZD66 (UniProt);InterPro=Protein of unknown function DUF674 (IPR007750);TENOR=Os01t0153600-00
Chr01	irgsp1_rep	CDS	2887721	2888434	.	-	0	Parent=Os01t0153600-00
Chr01	irgsp1_rep	CDS	2887060	2887272	.	-	0	Parent=Os01t0153600-00
Chr01	irgsp1_rep	mRNA	2887717	2888430	.	+	.	ID=Os01t0153625-00;Name=Os01t0153625-00;Locus_id=Os01g0153625;Note=Hypothetical protein.;Transcript_evidence=BT085097 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0153625-00
Chr01	irgsp1_rep	five_prime_UTR	2887717	2887717	.	+	.	Parent=Os01t0153625-00
Chr01	irgsp1_rep	CDS	2887718	2888430	.	+	0	Parent=Os01t0153625-00
Chr01	irgsp1_rep	mRNA	2892920	2894707	.	-	.	ID=Os01t0153700-01;Name=Os01t0153700-01;Locus_id=Os01g0153700;Note=Conserved hypothetical protein.;Transcript_evidence=AK105875 (DDBJ%2C Best hit);ORF_evidence=B9ESX7 (UniProt);NIAS_FLcDNA=001-204-B08;Expression=AK105875;TENOR=Os01t0153700-01;KEGG=Os01t0153700-01
Chr01	irgsp1_rep	five_prime_UTR	2894659	2894707	.	-	.	Parent=Os01t0153700-01
Chr01	irgsp1_rep	CDS	2893282	2894658	.	-	0	Parent=Os01t0153700-01
Chr01	irgsp1_rep	three_prime_UTR	2892920	2893281	.	-	.	Parent=Os01t0153700-01
Chr01	irgsp1_rep	mRNA	2896841	2897944	.	+	.	ID=Os01t0153800-00;Name=Os01t0153800-00;Locus_id=Os01g0153800;Note=Similar to gibberellin receptor GID1L2.;Transcript_evidence=AK331485 (DDBJ);ORF_evidence=NP_001148081.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Alpha/beta hydrolase fold-3 (IPR013094);TENOR=Os01t0153800-00;KEGG=Os01t0153800-00
Chr01	irgsp1_rep	CDS	2896841	2897944	.	+	0	Parent=Os01t0153800-00
Chr01	irgsp1_rep	mRNA	2899057	2899947	.	-	.	ID=Os01t0153900-00;Name=Os01t0153900-00;Locus_id=Os01g0153900;Note=Hypothetical conserved gene.;Transcript_evidence=EU954866 (DDBJ);ORF_evidence=Q94JD6 (UniProt);InterPro=Protein of unknown function DUF674 (IPR007750);TENOR=Os01t0153900-00;KEGG=Os01t0153900-00
Chr01	irgsp1_rep	five_prime_UTR	2899897	2899947	.	-	.	Parent=Os01t0153900-00
Chr01	irgsp1_rep	CDS	2899129	2899896	.	-	0	Parent=Os01t0153900-00
Chr01	irgsp1_rep	three_prime_UTR	2899057	2899128	.	-	.	Parent=Os01t0153900-00
Chr01	irgsp1_rep	mRNA	2901602	2902192	.	-	.	ID=Os01t0153950-00;Name=Os01t0153950-00;Locus_id=Os01g0153950;Note=Protein of unknown function DUF674 domain containing protein.;Transcript_evidence=EU972340 (DDBJ);ORF_evidence=A2ZPE3 (UniProt);InterPro=Protein of unknown function DUF674 (IPR007750);TENOR=Os01t0153950-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	2902066	2902192	.	-	.	Parent=Os01t0153950-00
Chr01	irgsp1_rep	CDS	2901817	2902065	.	-	0	Parent=Os01t0153950-00
Chr01	irgsp1_rep	CDS	2901602	2901742	.	-	0	Parent=Os01t0153950-00
Chr01	irgsp1_rep	mRNA	2903069	2903970	.	-	.	ID=Os01t0154000-01;Name=Os01t0154000-01;Locus_id=Os01g0154000;Note=Conserved hypothetical protein.;Transcript_evidence=AK108752 (DDBJ%2C Best hit);ORF_evidence=NP_001176853.1 (RefSeq);NIAS_FLcDNA=002-150-F07;TENOR=Os01t0154000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	2903887	2903970	.	-	.	Parent=Os01t0154000-01
Chr01	irgsp1_rep	CDS	2903665	2903886	.	-	0	Parent=Os01t0154000-01
Chr01	irgsp1_rep	three_prime_UTR	2903069	2903664	.	-	.	Parent=Os01t0154000-01
Chr01	irgsp1_rep	mRNA	2907071	2907926	.	-	.	ID=Os01t0154100-00;Name=Os01t0154100-00;Locus_id=Os01g0154100;Note=Protein of unknown function DUF674 domain containing protein.;Transcript_evidence=EU954866 (DDBJ);ORF_evidence=Q94JD4 (UniProt);InterPro=Protein of unknown function DUF674 (IPR007750);TENOR=Os01t0154100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	2907921	2907926	.	-	.	Parent=Os01t0154100-00
Chr01	irgsp1_rep	CDS	2907117	2907920	.	-	0	Parent=Os01t0154100-00
Chr01	irgsp1_rep	three_prime_UTR	2907071	2907116	.	-	.	Parent=Os01t0154100-00
Chr01	irgsp1_rep	mRNA	2920425	2921321	.	-	.	ID=Os01t0154200-00;Name=Os01t0154200-00;Locus_id=Os01g0154200;Note=Protein of unknown function DUF674 domain containing protein.;Transcript_evidence=FP098916 (DDBJ);ORF_evidence=Q5ZCE4 (UniProt);InterPro=Protein of unknown function DUF674 (IPR007750);TENOR=Os01t0154200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	2921320	2921321	.	-	.	Parent=Os01t0154200-00
Chr01	irgsp1_rep	CDS	2920645	2921319	.	-	0	Parent=Os01t0154200-00
Chr01	irgsp1_rep	CDS	2920425	2920529	.	-	0	Parent=Os01t0154200-00
Chr01	irgsp1_rep	mRNA	2920641	2921282	.	+	.	ID=Os01t0154250-00;Name=Os01t0154250-00;Locus_id=Os01g0154250;Note=Hypothetical protein.;Transcript_evidence=BT085097 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0154250-00
Chr01	irgsp1_rep	five_prime_UTR	2920641	2920641	.	+	.	Parent=Os01t0154250-00
Chr01	irgsp1_rep	CDS	2920642	2921280	.	+	0	Parent=Os01t0154250-00
Chr01	irgsp1_rep	three_prime_UTR	2921281	2921282	.	+	.	Parent=Os01t0154250-00
Chr01	irgsp1_rep	mRNA	2922561	2924802	.	+	.	ID=Os01t0154300-00;Name=Os01t0154300-00;Locus_id=Os01g0154300;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9ESY0 (UniProt);TENOR=Os01t0154300-00;KEGG=Os01t0154300-00
Chr01	irgsp1_rep	CDS	2922561	2922755	.	+	0	Parent=Os01t0154300-00
Chr01	irgsp1_rep	CDS	2924701	2924802	.	+	0	Parent=Os01t0154300-00
Chr01	irgsp1_rep	mRNA	2925935	2928765	.	+	.	ID=Os01t0154500-01;Name=Os01t0154500-01;Locus_id=Os01g0154500;Note=Protein of unknown function DUF674 domain containing protein.;Transcript_evidence=AK108793 (DDBJ%2C Best hit);ORF_evidence=B8ADC6 (UniProt);InterPro=Protein of unknown function DUF674 (IPR007750);NIAS_FLcDNA=002-151-B09;Expression=AK108793;TENOR=Os01t0154500-01;KEGG=Os01t0154500-01
Chr01	irgsp1_rep	five_prime_UTR	2925935	2926007	.	+	.	Parent=Os01t0154500-01
Chr01	irgsp1_rep	five_prime_UTR	2927371	2927425	.	+	.	Parent=Os01t0154500-01
Chr01	irgsp1_rep	CDS	2927426	2928040	.	+	0	Parent=Os01t0154500-01
Chr01	irgsp1_rep	CDS	2928150	2928251	.	+	0	Parent=Os01t0154500-01
Chr01	irgsp1_rep	three_prime_UTR	2928252	2928765	.	+	.	Parent=Os01t0154500-01
Chr01	irgsp1_rep	mRNA	2926706	2927875	.	-	.	ID=Os01t0154550-01;Name=Os01t0154550-01;Locus_id=Os01g0154550;Note=Non-protein coding transcript.;Transcript_evidence=AK288511 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090042F02;TENOR=Os01t0154550-01
Chr01	irgsp1_rep	exon	2926706	2927875	.	-	.	Parent=Os01t0154550-01
Chr01	irgsp1_rep	mRNA	2930802	2932886	.	+	.	ID=Os01t0154600-01;Name=Os01t0154600-01;Locus_id=Os01g0154600;Note=Protein of unknown function DUF674 domain containing protein.;Transcript_evidence=AK106595 (DDBJ%2C Best hit);ORF_evidence=A2WKU6 (UniProt);InterPro=Protein of unknown function DUF674 (IPR007750);NIAS_FLcDNA=002-112-A05;Expression=AK106595;TENOR=Os01t0154600-01;KEGG=Os01t0154600-01
Chr01	irgsp1_rep	five_prime_UTR	2930802	2930921	.	+	.	Parent=Os01t0154600-01
Chr01	irgsp1_rep	five_prime_UTR	2931857	2931912	.	+	.	Parent=Os01t0154600-01
Chr01	irgsp1_rep	CDS	2931913	2932530	.	+	0	Parent=Os01t0154600-01
Chr01	irgsp1_rep	CDS	2932646	2932753	.	+	0	Parent=Os01t0154600-01
Chr01	irgsp1_rep	three_prime_UTR	2932754	2932886	.	+	.	Parent=Os01t0154600-01
Chr01	irgsp1_rep	mRNA	2954510	2956849	.	+	.	ID=Os01t0154950-01;Name=Os01t0154950-01;Locus_id=Os01g0154950;Note=Hypothetical gene.;Transcript_evidence=AK287908 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065212K06;TENOR=Os01t0154950-01;KEGG=Os01t0154950-01
Chr01	irgsp1_rep	five_prime_UTR	2954510	2954510	.	+	.	Parent=Os01t0154950-01
Chr01	irgsp1_rep	CDS	2954511	2955398	.	+	0	Parent=Os01t0154950-01
Chr01	irgsp1_rep	three_prime_UTR	2955399	2956849	.	+	.	Parent=Os01t0154950-01
Chr01	irgsp1_rep	mRNA	2957166	2958439	.	-	.	ID=Os01t0155000-02;Name=Os01t0155000-02;Locus_id=Os01g0155000;Oryzabase Gene Symbol Synonym(s)=Hsr203j%2C OsHsr203j;Note=Alpha/beta hydrolase fold-3 domain containing protein.;Transcript_evidence=AK060305 (DDBJ%2C Best hit),AK073659 (DDBJ%2C Best hit);ORF_evidence=NP_001148081.1 (RefSeq);NIAS_FLcDNA=001-007-A09,J033053C20;Oryzabase=10218;Expression=AK060305;TENOR=Os01t0155000-02;KEGG=Os01t0155000-02
Chr01	irgsp1_rep	five_prime_UTR	2958410	2958439	.	-	.	Parent=Os01t0155000-02
Chr01	irgsp1_rep	CDS	2957396	2958409	.	-	0	Parent=Os01t0155000-02
Chr01	irgsp1_rep	three_prime_UTR	2957166	2957395	.	-	.	Parent=Os01t0155000-02
Chr01	irgsp1_rep	mRNA	2962422	2964972	.	-	.	ID=Os01t0155200-00;Name=Os01t0155200-00;Locus_id=Os01g0155200;Note=Similar to H0525E10.8 protein.;Transcript_evidence=AK252147 (DDBJ);ORF_evidence=Q01K00 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),S-receptor-like serine/threonine-protein kinase (IPR024171);TENOR=Os01t0155200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	2964918	2964972	.	-	.	Parent=Os01t0155200-00
Chr01	irgsp1_rep	CDS	2962422	2964917	.	-	0	Parent=Os01t0155200-00
Chr01	irgsp1_rep	mRNA	2966314	2967346	.	+	.	ID=Os01t0155300-00;Name=Os01t0155300-00;Locus_id=Os01g0155300;Note=Similar to dirigent-like protein.;Transcript_evidence=BT084857 (DDBJ);ORF_evidence=NP_001150958.1 (RefSeq);InterPro=Plant disease resistance response protein (IPR004265);TENOR=Os01t0155300-00;KEGG=Os01t0155300-00
Chr01	irgsp1_rep	five_prime_UTR	2966314	2966323	.	+	.	Parent=Os01t0155300-00
Chr01	irgsp1_rep	CDS	2966324	2967346	.	+	0	Parent=Os01t0155300-00
Chr01	irgsp1_rep	mRNA	2971130	2977009	.	-	.	ID=Os01t0155400-01;Name=Os01t0155400-01;Locus_id=Os01g0155400;Note=Conserved hypothetical protein.;Transcript_evidence=AK063770 (DDBJ%2C Best hit);ORF_evidence=B9ESY2 (UniProt);NIAS_FLcDNA=001-121-B11;TENOR=Os01t0155400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	2977009	2977009	.	-	.	Parent=Os01t0155400-01
Chr01	irgsp1_rep	CDS	2976889	2977008	.	-	0	Parent=Os01t0155400-01
Chr01	irgsp1_rep	CDS	2976399	2976510	.	-	0	Parent=Os01t0155400-01
Chr01	irgsp1_rep	CDS	2975741	2975816	.	-	2	Parent=Os01t0155400-01
Chr01	irgsp1_rep	CDS	2974990	2975056	.	-	1	Parent=Os01t0155400-01
Chr01	irgsp1_rep	CDS	2974577	2974642	.	-	0	Parent=Os01t0155400-01
Chr01	irgsp1_rep	CDS	2974093	2974200	.	-	0	Parent=Os01t0155400-01
Chr01	irgsp1_rep	CDS	2973830	2973960	.	-	0	Parent=Os01t0155400-01
Chr01	irgsp1_rep	CDS	2973681	2973747	.	-	1	Parent=Os01t0155400-01
Chr01	irgsp1_rep	CDS	2973502	2973569	.	-	0	Parent=Os01t0155400-01
Chr01	irgsp1_rep	CDS	2973308	2973401	.	-	1	Parent=Os01t0155400-01
Chr01	irgsp1_rep	CDS	2971812	2971882	.	-	0	Parent=Os01t0155400-01
Chr01	irgsp1_rep	CDS	2971369	2971726	.	-	1	Parent=Os01t0155400-01
Chr01	irgsp1_rep	three_prime_UTR	2971130	2971368	.	-	.	Parent=Os01t0155400-01
Chr01	irgsp1_rep	mRNA	2982542	2986094	.	+	.	ID=Os01t0155500-01;Name=Os01t0155500-01;Locus_id=Os01g0155500;Oryzabase Gene Symbol Synonym(s)=OsCrRLK1L4;Oryzabase Gene Name Synonym(s)=Catharanthus roseus receptor-like kinase1-like kinase 4;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK099840 (DDBJ%2C Best hit);ORF_evidence=A2ZPF5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635),Malectin-like carbohydrate-binding domain (IPR024788);NIAS_FLcDNA=J013108C16;Oryzabase=18674;TENOR=Os01t0155500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	2982542	2982626	.	+	.	Parent=Os01t0155500-01
Chr01	irgsp1_rep	CDS	2982627	2982649	.	+	0	Parent=Os01t0155500-01
Chr01	irgsp1_rep	CDS	2982803	2982851	.	+	1	Parent=Os01t0155500-01
Chr01	irgsp1_rep	CDS	2983215	2985953	.	+	0	Parent=Os01t0155500-01
Chr01	irgsp1_rep	three_prime_UTR	2985954	2986094	.	+	.	Parent=Os01t0155500-01
Chr01	irgsp1_rep	mRNA	2986329	2989280	.	-	.	ID=Os01t0155600-01;Name=Os01t0155600-01;Locus_id=Os01g0155600;CGSNL Gene Symbol=RSZP37A;Oryzabase Gene Symbol Synonym(s)=Os-RS2Z37%2C OsRS2Z37%2C RS2Z37%2C Os-RSZ37a%2C OsRSZ37a;Oryzabase Gene Name Synonym(s)=RS domain with zinc knuckle protein 37a%2C RSZ subfamily protein 37a%2C RS2Z subfamily protein 37;Note=Similar to Splicing factor RSZ33.;Transcript_evidence=AK071635 (DDBJ%2C Best hit);ORF_evidence=A6MZ96 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA recognition motif domain (IPR000504),Zinc finger%2C CCHC-type (IPR001878),Nucleotide-binding%2C alpha-beta plait (IPR012677),Zinc finger%2C CCHC retroviral-type (IPR013084);NIAS_FLcDNA=J023100L15;Oryzabase=22747;Expression=AK071635;TENOR=Os01t0155600-01;KEGG=Os01t0155600-01
Chr01	irgsp1_rep	five_prime_UTR	2989120	2989280	.	-	.	Parent=Os01t0155600-01
Chr01	irgsp1_rep	five_prime_UTR	2988888	2988893	.	-	.	Parent=Os01t0155600-01
Chr01	irgsp1_rep	CDS	2988760	2988887	.	-	0	Parent=Os01t0155600-01
Chr01	irgsp1_rep	CDS	2988003	2988042	.	-	1	Parent=Os01t0155600-01
Chr01	irgsp1_rep	CDS	2987798	2987893	.	-	0	Parent=Os01t0155600-01
Chr01	irgsp1_rep	CDS	2987472	2987668	.	-	0	Parent=Os01t0155600-01
Chr01	irgsp1_rep	CDS	2987301	2987390	.	-	1	Parent=Os01t0155600-01
Chr01	irgsp1_rep	CDS	2986563	2986986	.	-	1	Parent=Os01t0155600-01
Chr01	irgsp1_rep	three_prime_UTR	2986329	2986562	.	-	.	Parent=Os01t0155600-01
Chr01	irgsp1_rep	mRNA	2986329	2989246	.	-	.	ID=Os01t0155600-02;Name=Os01t0155600-02;Locus_id=Os01g0155600;CGSNL Gene Symbol=RSZP37A;Oryzabase Gene Symbol Synonym(s)=Os-RS2Z37%2C OsRS2Z37%2C RS2Z37%2C Os-RSZ37a%2C OsRSZ37a;Oryzabase Gene Name Synonym(s)=RS domain with zinc knuckle protein 37a%2C RSZ subfamily protein 37a%2C RS2Z subfamily protein 37;Note=Similar to Splicing factor RSZ33.;Transcript_evidence=AK060171 (DDBJ%2C Best hit);ORF_evidence=A6MZ96 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA recognition motif domain (IPR000504),Zinc finger%2C CCHC-type (IPR001878),Nucleotide-binding%2C alpha-beta plait (IPR012677),Zinc finger%2C CCHC retroviral-type (IPR013084);NIAS_FLcDNA=006-311-F07;Oryzabase=22747;Expression=AK060171;TENOR=Os01t0155600-02;KEGG=Os01t0155600-02
Chr01	irgsp1_rep	five_prime_UTR	2989130	2989246	.	-	.	Parent=Os01t0155600-02
Chr01	irgsp1_rep	five_prime_UTR	2988888	2988893	.	-	.	Parent=Os01t0155600-02
Chr01	irgsp1_rep	CDS	2988760	2988887	.	-	0	Parent=Os01t0155600-02
Chr01	irgsp1_rep	CDS	2988003	2988042	.	-	1	Parent=Os01t0155600-02
Chr01	irgsp1_rep	CDS	2987798	2987893	.	-	0	Parent=Os01t0155600-02
Chr01	irgsp1_rep	CDS	2987472	2987668	.	-	0	Parent=Os01t0155600-02
Chr01	irgsp1_rep	CDS	2987301	2987390	.	-	1	Parent=Os01t0155600-02
Chr01	irgsp1_rep	CDS	2986563	2986986	.	-	1	Parent=Os01t0155600-02
Chr01	irgsp1_rep	three_prime_UTR	2986329	2986562	.	-	.	Parent=Os01t0155600-02
Chr01	irgsp1_rep	mRNA	2999576	3001139	.	+	.	ID=Os01t0155800-01;Name=Os01t0155800-01;Locus_id=Os01g0155800;Note=Conserved hypothetical protein.;Transcript_evidence=AK241045 (DDBJ%2C Best hit);ORF_evidence=NP_001042067.1 (RefSeq);NIAS_FLcDNA=J065061I19;TENOR=Os01t0155800-01;KEGG=Os01t0155800-01
Chr01	irgsp1_rep	five_prime_UTR	2999576	2999659	.	+	.	Parent=Os01t0155800-01
Chr01	irgsp1_rep	five_prime_UTR	3000199	3000221	.	+	.	Parent=Os01t0155800-01
Chr01	irgsp1_rep	CDS	3000222	3000495	.	+	0	Parent=Os01t0155800-01
Chr01	irgsp1_rep	CDS	3000834	3000934	.	+	2	Parent=Os01t0155800-01
Chr01	irgsp1_rep	three_prime_UTR	3000935	3001139	.	+	.	Parent=Os01t0155800-01
Chr01	irgsp1_rep	mRNA	3003860	3005728	.	-	.	ID=Os01t0156000-01;Name=Os01t0156000-01;Locus_id=Os01g0156000;Note=Similar to Myb family DNA-binding protein.;Transcript_evidence=AK106969 (DDBJ%2C Best hit);ORF_evidence=Q5ZCD7 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=002-119-G02;Expression=AK106969;TENOR=Os01t0156000-01;KEGG=Os01t0156000-01
Chr01	irgsp1_rep	five_prime_UTR	3005705	3005728	.	-	.	Parent=Os01t0156000-01
Chr01	irgsp1_rep	CDS	3005501	3005704	.	-	0	Parent=Os01t0156000-01
Chr01	irgsp1_rep	CDS	3005131	3005386	.	-	0	Parent=Os01t0156000-01
Chr01	irgsp1_rep	CDS	3004890	3004988	.	-	2	Parent=Os01t0156000-01
Chr01	irgsp1_rep	CDS	3004669	3004794	.	-	2	Parent=Os01t0156000-01
Chr01	irgsp1_rep	CDS	3004431	3004552	.	-	2	Parent=Os01t0156000-01
Chr01	irgsp1_rep	CDS	3004245	3004304	.	-	0	Parent=Os01t0156000-01
Chr01	irgsp1_rep	CDS	3004096	3004149	.	-	0	Parent=Os01t0156000-01
Chr01	irgsp1_rep	three_prime_UTR	3003860	3004095	.	-	.	Parent=Os01t0156000-01
Chr01	irgsp1_rep	mRNA	3013915	3014751	.	-	.	ID=Os01t0156300-01;Name=Os01t0156300-01;Locus_id=Os01g0156300;Oryzabase Gene Symbol Synonym(s)=PBI1%2C OsPBI1;Oryzabase Gene Name Synonym(s)=OsPUB44-interacting protein 1%2C PUB44-interacting protein 1;Note=Similar to Cappuccino protein.;Transcript_evidence=AK107993 (DDBJ%2C Best hit);ORF_evidence=A2WKV9 (UniProt);InterPro=Protein of unknown function DUF1110 (IPR010535);NIAS_FLcDNA=002-135-F10;Oryzabase=21344;Expression=AK107993;TENOR=Os01t0156300-01;KEGG=Os01t0156300-01
Chr01	irgsp1_rep	five_prime_UTR	3014692	3014751	.	-	.	Parent=Os01t0156300-01
Chr01	irgsp1_rep	CDS	3014119	3014691	.	-	0	Parent=Os01t0156300-01
Chr01	irgsp1_rep	three_prime_UTR	3013915	3014118	.	-	.	Parent=Os01t0156300-01
Chr01	irgsp1_rep	mRNA	3031479	3033009	.	+	.	ID=Os01t0157200-01;Name=Os01t0157200-01;Locus_id=Os01g0157200;Note=Conserved hypothetical protein.;Transcript_evidence=AK108577 (DDBJ%2C Best hit);ORF_evidence=A2ZPG5 (UniProt);NIAS_FLcDNA=002-145-G03;Expression=AK108577;TENOR=Os01t0157200-01;KEGG=Os01t0157200-01
Chr01	irgsp1_rep	five_prime_UTR	3031479	3031579	.	+	.	Parent=Os01t0157200-01
Chr01	irgsp1_rep	CDS	3031580	3032872	.	+	0	Parent=Os01t0157200-01
Chr01	irgsp1_rep	three_prime_UTR	3032873	3033009	.	+	.	Parent=Os01t0157200-01
Chr01	irgsp1_rep	mRNA	3035059	3035716	.	+	.	ID=Os01t0157400-00;Name=Os01t0157400-00;Locus_id=Os01g0157400;Note=Conserved hypothetical protein.;Transcript_evidence=EU974248 (DDBJ);ORF_evidence=Q5ZCC9 (UniProt);TENOR=Os01t0157400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	3035059	3035691	.	+	0	Parent=Os01t0157400-00
Chr01	irgsp1_rep	three_prime_UTR	3035692	3035716	.	+	.	Parent=Os01t0157400-00
Chr01	irgsp1_rep	mRNA	3036690	3037397	.	-	.	ID=Os01t0157500-00;Name=Os01t0157500-00;Locus_id=Os01g0157500;Note=Protein of unknown function DUF1110 domain containing protein.;Transcript_evidence=EU965613 (DDBJ);ORF_evidence=NP_001172188.1 (RefSeq);InterPro=Protein of unknown function DUF1110 (IPR010535);TENOR=Os01t0157500-00;KEGG=Os01t0157500-00
Chr01	irgsp1_rep	CDS	3036690	3037397	.	-	0	Parent=Os01t0157500-00
Chr01	irgsp1_rep	mRNA	3037689	3038708	.	+	.	ID=Os01t0157600-01;Name=Os01t0157600-01;Locus_id=Os01g0157600;Note=Conserved hypothetical protein.;Transcript_evidence=AK106766 (DDBJ%2C Best hit);ORF_evidence=Q9FYQ2 (UniProt);NIAS_FLcDNA=002-115-F01;TENOR=Os01t0157600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	3037689	3038576	.	+	0	Parent=Os01t0157600-01
Chr01	irgsp1_rep	three_prime_UTR	3038577	3038708	.	+	.	Parent=Os01t0157600-01
Chr01	irgsp1_rep	mRNA	3039286	3039984	.	+	.	ID=Os01t0157700-00;Name=Os01t0157700-00;Locus_id=Os01g0157700;Oryzabase Gene Symbol Synonym(s)=OsGT43D;Oryzabase Gene Name Synonym(s)=glycosyltransferase family GT43 member D;Note=Glycosyl transferase%2C family 43 domain containing protein.;Transcript_evidence=AK376884 (DDBJ);ORF_evidence=Q5ZCC5 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity (GO:0015018);InterPro=Glycosyl transferase%2C family 43 (IPR005027);Oryzabase=18479;TENOR=Os01t0157700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	3039286	3039984	.	+	0	Parent=Os01t0157700-00
Chr01	irgsp1_rep	mRNA	3041480	3044346	.	-	.	ID=Os01t0157800-01;Name=Os01t0157800-01;Locus_id=Os01g0157800;Oryzabase Gene Symbol Synonym(s)=OsDjC2;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C2;Note=Heat shock protein DnaJ%2C N-terminal domain containing protein.;Transcript_evidence=AK121694 (DDBJ%2C Best hit);ORF_evidence=NP_001146964.1 (RefSeq);GO=Molecular Function: heat shock protein binding (GO:0031072);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623);NIAS_FLcDNA=J033072F06;Oryzabase=12159;Expression=AK121694;TENOR=Os01t0157800-01;KEGG=Os01t0157800-01
Chr01	irgsp1_rep	five_prime_UTR	3044199	3044346	.	-	.	Parent=Os01t0157800-01
Chr01	irgsp1_rep	CDS	3044196	3044198	.	-	0	Parent=Os01t0157800-01
Chr01	irgsp1_rep	CDS	3043102	3043280	.	-	0	Parent=Os01t0157800-01
Chr01	irgsp1_rep	CDS	3041702	3041858	.	-	1	Parent=Os01t0157800-01
Chr01	irgsp1_rep	three_prime_UTR	3041480	3041701	.	-	.	Parent=Os01t0157800-01
Chr01	irgsp1_rep	mRNA	3044488	3047128	.	+	.	ID=Os01t0157900-01;Name=Os01t0157900-01;Locus_id=Os01g0157900;Note=Protein of unknown function Cys-rich family protein.;Transcript_evidence=AK072658 (DDBJ%2C Best hit);ORF_evidence=B4FUS3 (UniProt);InterPro=Uncharacterised protein family Cys-rich (IPR006461);NIAS_FLcDNA=J023134D11;Expression=AK072658;TENOR=Os01t0157900-01;KEGG=Os01t0157900-01
Chr01	irgsp1_rep	five_prime_UTR	3044488	3044633	.	+	.	Parent=Os01t0157900-01
Chr01	irgsp1_rep	CDS	3044634	3044898	.	+	0	Parent=Os01t0157900-01
Chr01	irgsp1_rep	CDS	3046202	3046402	.	+	2	Parent=Os01t0157900-01
Chr01	irgsp1_rep	CDS	3046608	3046849	.	+	2	Parent=Os01t0157900-01
Chr01	irgsp1_rep	three_prime_UTR	3046850	3047128	.	+	.	Parent=Os01t0157900-01
Chr01	irgsp1_rep	mRNA	3047432	3052194	.	+	.	ID=Os01t0158000-01;Name=Os01t0158000-01;Locus_id=Os01g0158000;CGSNL Gene Symbol=IMPA2;CGSNL Gene Name=IMPORTIN ALPHA 2;Oryzabase Gene Name Synonym(s)=importin alpha;Note=Importin alpha-2 subunit.;Transcript_evidence=AK103127 (DDBJ%2C Best hit);ORF_evidence=NP_001147773.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033119N19;Oryzabase=14479;Expression=AK103127;TENOR=Os01t0158000-01;KEGG=Os01t0158000-01
Chr01	irgsp1_rep	five_prime_UTR	3047432	3047503	.	+	.	Parent=Os01t0158000-01
Chr01	irgsp1_rep	CDS	3047504	3047582	.	+	0	Parent=Os01t0158000-01
Chr01	irgsp1_rep	CDS	3048265	3048487	.	+	2	Parent=Os01t0158000-01
Chr01	irgsp1_rep	CDS	3048954	3049107	.	+	1	Parent=Os01t0158000-01
Chr01	irgsp1_rep	CDS	3049253	3049355	.	+	0	Parent=Os01t0158000-01
Chr01	irgsp1_rep	CDS	3049554	3049738	.	+	2	Parent=Os01t0158000-01
Chr01	irgsp1_rep	CDS	3049972	3050051	.	+	0	Parent=Os01t0158000-01
Chr01	irgsp1_rep	CDS	3050433	3050583	.	+	1	Parent=Os01t0158000-01
Chr01	irgsp1_rep	CDS	3051015	3051096	.	+	0	Parent=Os01t0158000-01
Chr01	irgsp1_rep	CDS	3051221	3051279	.	+	2	Parent=Os01t0158000-01
Chr01	irgsp1_rep	CDS	3051379	3051684	.	+	0	Parent=Os01t0158000-01
Chr01	irgsp1_rep	CDS	3051825	3051989	.	+	0	Parent=Os01t0158000-01
Chr01	irgsp1_rep	three_prime_UTR	3051990	3052194	.	+	.	Parent=Os01t0158000-01
Chr01	irgsp1_rep	mRNA	3047456	3052121	.	+	.	ID=Os01t0158000-02;Name=Os01t0158000-02;Locus_id=Os01g0158000;CGSNL Gene Symbol=IMPA2;CGSNL Gene Name=IMPORTIN ALPHA 2;Oryzabase Gene Name Synonym(s)=importin alpha;Note=Importin alpha-2 subunit.;Transcript_evidence=AK058679 (DDBJ%2C Best hit);ORF_evidence=NP_001147773.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=001-018-H12;Oryzabase=14479;Expression=AK058679;TENOR=Os01t0158000-02;KEGG=Os01t0158000-02
Chr01	irgsp1_rep	five_prime_UTR	3047456	3047503	.	+	.	Parent=Os01t0158000-02
Chr01	irgsp1_rep	CDS	3047504	3047582	.	+	0	Parent=Os01t0158000-02
Chr01	irgsp1_rep	CDS	3048265	3048487	.	+	2	Parent=Os01t0158000-02
Chr01	irgsp1_rep	CDS	3048954	3049107	.	+	1	Parent=Os01t0158000-02
Chr01	irgsp1_rep	CDS	3049253	3049355	.	+	0	Parent=Os01t0158000-02
Chr01	irgsp1_rep	CDS	3049554	3049738	.	+	2	Parent=Os01t0158000-02
Chr01	irgsp1_rep	CDS	3049972	3050051	.	+	0	Parent=Os01t0158000-02
Chr01	irgsp1_rep	CDS	3050433	3050583	.	+	1	Parent=Os01t0158000-02
Chr01	irgsp1_rep	CDS	3051015	3051096	.	+	0	Parent=Os01t0158000-02
Chr01	irgsp1_rep	CDS	3051221	3051279	.	+	2	Parent=Os01t0158000-02
Chr01	irgsp1_rep	CDS	3051379	3051684	.	+	0	Parent=Os01t0158000-02
Chr01	irgsp1_rep	CDS	3051825	3051989	.	+	0	Parent=Os01t0158000-02
Chr01	irgsp1_rep	three_prime_UTR	3051990	3052121	.	+	.	Parent=Os01t0158000-02
Chr01	irgsp1_rep	mRNA	3052241	3053151	.	-	.	ID=Os01t0158100-01;Name=Os01t0158100-01;Locus_id=Os01g0158100;Note=Pentatricopeptide repeat containing protein.;Transcript_evidence=AK109233 (DDBJ%2C Best hit);ORF_evidence=Q6QPM7 (UniProt);NIAS_FLcDNA=002-156-F05;TENOR=Os01t0158100-01;KEGG=Os01t0158100-01
Chr01	irgsp1_rep	five_prime_UTR	3053121	3053151	.	-	.	Parent=Os01t0158100-01
Chr01	irgsp1_rep	CDS	3052317	3053120	.	-	0	Parent=Os01t0158100-01
Chr01	irgsp1_rep	three_prime_UTR	3052241	3052316	.	-	.	Parent=Os01t0158100-01
Chr01	irgsp1_rep	mRNA	3054481	3057198	.	+	.	ID=Os01t0158200-01;Name=Os01t0158200-01;Locus_id=Os01g0158200;CGSNL Gene Symbol=SCP1;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 1;Oryzabase Gene Symbol Synonym(s)=OsSCP1;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 1;Note=Similar to Serine carboxypeptidase II-1 precursor (EC 3.4.16.6) (CP-MII.1) (Fragment).;Transcript_evidence=AK071183 (DDBJ%2C Best hit);ORF_evidence=B6TM29 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=J023086P08;Oryzabase=19186;Expression=AK071183;TENOR=Os01t0158200-01;KEGG=Os01t0158200-01 (EC:3.4.16.5%2C EC:3.4.16.6)
Chr01	irgsp1_rep	five_prime_UTR	3054481	3054557	.	+	.	Parent=Os01t0158200-01
Chr01	irgsp1_rep	CDS	3054558	3054939	.	+	0	Parent=Os01t0158200-01
Chr01	irgsp1_rep	CDS	3055028	3055123	.	+	2	Parent=Os01t0158200-01
Chr01	irgsp1_rep	CDS	3055217	3055309	.	+	2	Parent=Os01t0158200-01
Chr01	irgsp1_rep	CDS	3055432	3055517	.	+	2	Parent=Os01t0158200-01
Chr01	irgsp1_rep	CDS	3055633	3055896	.	+	0	Parent=Os01t0158200-01
Chr01	irgsp1_rep	CDS	3056076	3056203	.	+	0	Parent=Os01t0158200-01
Chr01	irgsp1_rep	CDS	3056306	3056401	.	+	1	Parent=Os01t0158200-01
Chr01	irgsp1_rep	CDS	3056580	3056685	.	+	1	Parent=Os01t0158200-01
Chr01	irgsp1_rep	CDS	3056778	3056942	.	+	0	Parent=Os01t0158200-01
Chr01	irgsp1_rep	three_prime_UTR	3056943	3057198	.	+	.	Parent=Os01t0158200-01
Chr01	irgsp1_rep	mRNA	3058565	3059717	.	-	.	ID=Os01t0158400-01;Name=Os01t0158400-01;Locus_id=Os01g0158400;Note=Galactose-binding like domain containing protein.;Transcript_evidence=AK102322 (DDBJ%2C Best hit);ORF_evidence=NP_001149285.1 (RefSeq);NIAS_FLcDNA=J033090J07;Expression=AK102322;TENOR=Os01t0158400-01;KEGG=Os01t0158400-01
Chr01	irgsp1_rep	five_prime_UTR	3059602	3059717	.	-	.	Parent=Os01t0158400-01
Chr01	irgsp1_rep	CDS	3059371	3059601	.	-	0	Parent=Os01t0158400-01
Chr01	irgsp1_rep	CDS	3059152	3059270	.	-	0	Parent=Os01t0158400-01
Chr01	irgsp1_rep	CDS	3058656	3059040	.	-	1	Parent=Os01t0158400-01
Chr01	irgsp1_rep	three_prime_UTR	3058565	3058655	.	-	.	Parent=Os01t0158400-01
Chr01	irgsp1_rep	mRNA	3058564	3059643	.	-	.	ID=Os01t0158400-02;Name=Os01t0158400-02;Locus_id=Os01g0158400;Note=Galactose-binding like domain containing protein.;Transcript_evidence=AK063812 (DDBJ%2C Best hit);ORF_evidence=NP_001149285.1 (RefSeq);NIAS_FLcDNA=001-121-G12;TENOR=Os01t0158400-02
Chr01	irgsp1_rep	five_prime_UTR	3059602	3059643	.	-	.	Parent=Os01t0158400-02
Chr01	irgsp1_rep	CDS	3059371	3059601	.	-	0	Parent=Os01t0158400-02
Chr01	irgsp1_rep	CDS	3059152	3059270	.	-	0	Parent=Os01t0158400-02
Chr01	irgsp1_rep	CDS	3058656	3059040	.	-	1	Parent=Os01t0158400-02
Chr01	irgsp1_rep	three_prime_UTR	3058564	3058655	.	-	.	Parent=Os01t0158400-02
Chr01	irgsp1_rep	mRNA	3060978	3066135	.	+	.	ID=Os01t0158500-01;Name=Os01t0158500-01;Locus_id=Os01g0158500;Note=Similar to arginyl-tRNA synthetase.;Transcript_evidence=AK241813 (DDBJ%2C Best hit);ORF_evidence=NP_001148134.1 (RefSeq);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: arginyl-tRNA aminoacylation (GO:0006420),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: arginine-tRNA ligase activity (GO:0004814),Molecular Function: ATP binding (GO:0005524);InterPro=Arginyl-tRNA synthetase%2C class Ia (IPR001278),Aminoacyl-tRNA synthetase%2C class I%2C conserved site (IPR001412),Arginyl tRNA synthetase%2C class Ia%2C N-terminal (IPR005148),DALR anticodon binding (IPR008909),Aminoacyl-tRNA synthetase%2C class 1a%2C anticodon-binding (IPR009080),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Arginyl-tRNA synthetase%2C class Ia%2C core (IPR015945);NIAS_FLcDNA=J065210K21;TENOR=Os01t0158500-01;KEGG=Os01t0158500-01 (EC:6.1.1.19)
Chr01	irgsp1_rep	five_prime_UTR	3060978	3061047	.	+	.	Parent=Os01t0158500-01
Chr01	irgsp1_rep	five_prime_UTR	3061355	3061406	.	+	.	Parent=Os01t0158500-01
Chr01	irgsp1_rep	CDS	3061407	3061436	.	+	0	Parent=Os01t0158500-01
Chr01	irgsp1_rep	CDS	3061734	3061867	.	+	0	Parent=Os01t0158500-01
Chr01	irgsp1_rep	CDS	3061979	3062054	.	+	1	Parent=Os01t0158500-01
Chr01	irgsp1_rep	CDS	3062142	3062243	.	+	0	Parent=Os01t0158500-01
Chr01	irgsp1_rep	CDS	3062327	3062542	.	+	0	Parent=Os01t0158500-01
Chr01	irgsp1_rep	CDS	3062615	3062695	.	+	0	Parent=Os01t0158500-01
Chr01	irgsp1_rep	CDS	3063219	3063306	.	+	0	Parent=Os01t0158500-01
Chr01	irgsp1_rep	CDS	3063392	3063492	.	+	2	Parent=Os01t0158500-01
Chr01	irgsp1_rep	CDS	3063789	3063961	.	+	0	Parent=Os01t0158500-01
Chr01	irgsp1_rep	CDS	3064098	3064182	.	+	1	Parent=Os01t0158500-01
Chr01	irgsp1_rep	CDS	3064290	3064491	.	+	0	Parent=Os01t0158500-01
Chr01	irgsp1_rep	CDS	3064577	3064646	.	+	2	Parent=Os01t0158500-01
Chr01	irgsp1_rep	CDS	3064956	3065025	.	+	1	Parent=Os01t0158500-01
Chr01	irgsp1_rep	CDS	3065138	3065227	.	+	0	Parent=Os01t0158500-01
Chr01	irgsp1_rep	CDS	3065321	3065389	.	+	0	Parent=Os01t0158500-01
Chr01	irgsp1_rep	CDS	3065566	3065664	.	+	0	Parent=Os01t0158500-01
Chr01	irgsp1_rep	CDS	3065814	3065924	.	+	0	Parent=Os01t0158500-01
Chr01	irgsp1_rep	three_prime_UTR	3065925	3066135	.	+	.	Parent=Os01t0158500-01
Chr01	irgsp1_rep	mRNA	3061751	3065924	.	-	.	ID=Os01t0158533-00;Name=Os01t0158533-00;Locus_id=Os01g0158533;Note=Hypothetical protein.;Transcript_evidence=tplb0044b06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0158533-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	3065809	3065924	.	-	.	Parent=Os01t0158533-00
Chr01	irgsp1_rep	five_prime_UTR	3065544	3065657	.	-	.	Parent=Os01t0158533-00
Chr01	irgsp1_rep	five_prime_UTR	3065146	3065263	.	-	.	Parent=Os01t0158533-00
Chr01	irgsp1_rep	five_prime_UTR	3064916	3065030	.	-	.	Parent=Os01t0158533-00
Chr01	irgsp1_rep	five_prime_UTR	3064353	3064515	.	-	.	Parent=Os01t0158533-00
Chr01	irgsp1_rep	CDS	3064285	3064352	.	-	0	Parent=Os01t0158533-00
Chr01	irgsp1_rep	CDS	3064097	3064180	.	-	1	Parent=Os01t0158533-00
Chr01	irgsp1_rep	CDS	3063768	3063960	.	-	1	Parent=Os01t0158533-00
Chr01	irgsp1_rep	CDS	3063406	3063468	.	-	0	Parent=Os01t0158533-00
Chr01	irgsp1_rep	CDS	3063210	3063323	.	-	0	Parent=Os01t0158533-00
Chr01	irgsp1_rep	CDS	3062612	3062689	.	-	0	Parent=Os01t0158533-00
Chr01	irgsp1_rep	CDS	3062471	3062539	.	-	0	Parent=Os01t0158533-00
Chr01	irgsp1_rep	three_prime_UTR	3062242	3062470	.	-	.	Parent=Os01t0158533-00
Chr01	irgsp1_rep	three_prime_UTR	3061983	3062072	.	-	.	Parent=Os01t0158533-00
Chr01	irgsp1_rep	three_prime_UTR	3061751	3061872	.	-	.	Parent=Os01t0158533-00
Chr01	irgsp1_rep	mRNA	3067332	3067968	.	+	.	ID=Os01t0158566-00;Name=Os01t0158566-00;Locus_id=Os01g0158566;Note=Hypothetical conserved gene.;Transcript_evidence=CU861703 (DDBJ%2C Best hit);ORF_evidence=Q5ZEM0 (UniProt);TENOR=Os01t0158566-00;KEGG=Os01t0158566-00
Chr01	irgsp1_rep	five_prime_UTR	3067332	3067332	.	+	.	Parent=Os01t0158566-00
Chr01	irgsp1_rep	CDS	3067333	3067605	.	+	0	Parent=Os01t0158566-00
Chr01	irgsp1_rep	three_prime_UTR	3067606	3067968	.	+	.	Parent=Os01t0158566-00
Chr01	irgsp1_rep	mRNA	3067950	3071237	.	-	.	ID=Os01t0158600-01;Name=Os01t0158600-01;Locus_id=Os01g0158600;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=AK070173 (DDBJ%2C Best hit);ORF_evidence=Q2QVW9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J023041K23;Expression=AK070173;TENOR=Os01t0158600-01;KEGG=Os01t0158600-01
Chr01	irgsp1_rep	five_prime_UTR	3071137	3071237	.	-	.	Parent=Os01t0158600-01
Chr01	irgsp1_rep	CDS	3068071	3071136	.	-	0	Parent=Os01t0158600-01
Chr01	irgsp1_rep	three_prime_UTR	3067950	3068070	.	-	.	Parent=Os01t0158600-01
Chr01	irgsp1_rep	mRNA	3079533	3084696	.	-	.	ID=Os01t0158800-00;Name=Os01t0158800-00;Locus_id=Os01g0158800;Note=Similar to PHD finger protein.;Transcript_evidence=FP096693 (DDBJ);ORF_evidence=NP_001147383.1 (RefSeq);InterPro=Protein of unknown function DUF3594 (IPR021998);TENOR=Os01t0158800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	3084398	3084696	.	-	0	Parent=Os01t0158800-00
Chr01	irgsp1_rep	CDS	3083949	3084203	.	-	1	Parent=Os01t0158800-00
Chr01	irgsp1_rep	CDS	3079538	3079700	.	-	1	Parent=Os01t0158800-00
Chr01	irgsp1_rep	three_prime_UTR	3079533	3079537	.	-	.	Parent=Os01t0158800-00
Chr01	irgsp1_rep	mRNA	3085452	3090887	.	-	.	ID=Os01t0158900-01;Name=Os01t0158900-01;Locus_id=Os01g0158900;Note=Zinc finger%2C NF-X1-type domain containing protein.;Transcript_evidence=AK066765 (DDBJ%2C Best hit);ORF_evidence=NP_196185.3 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C NF-X1-type (IPR000967),Zinc finger%2C RING-type (IPR001841),Zinc finger%2C PHD-type%2C conserved site (IPR019786);NIAS_FLcDNA=J013082G02;Expression=AK066765;TENOR=Os01t0158900-01;KEGG=Os01t0158900-01
Chr01	irgsp1_rep	five_prime_UTR	3090808	3090887	.	-	.	Parent=Os01t0158900-01
Chr01	irgsp1_rep	CDS	3089599	3090807	.	-	0	Parent=Os01t0158900-01
Chr01	irgsp1_rep	CDS	3089035	3089148	.	-	0	Parent=Os01t0158900-01
Chr01	irgsp1_rep	CDS	3088905	3088960	.	-	0	Parent=Os01t0158900-01
Chr01	irgsp1_rep	CDS	3088528	3088594	.	-	1	Parent=Os01t0158900-01
Chr01	irgsp1_rep	CDS	3088185	3088277	.	-	0	Parent=Os01t0158900-01
Chr01	irgsp1_rep	CDS	3087969	3088054	.	-	0	Parent=Os01t0158900-01
Chr01	irgsp1_rep	CDS	3087709	3087871	.	-	1	Parent=Os01t0158900-01
Chr01	irgsp1_rep	CDS	3087410	3087616	.	-	0	Parent=Os01t0158900-01
Chr01	irgsp1_rep	CDS	3087085	3087275	.	-	0	Parent=Os01t0158900-01
Chr01	irgsp1_rep	CDS	3086904	3086985	.	-	1	Parent=Os01t0158900-01
Chr01	irgsp1_rep	CDS	3086270	3086476	.	-	0	Parent=Os01t0158900-01
Chr01	irgsp1_rep	CDS	3086069	3086155	.	-	0	Parent=Os01t0158900-01
Chr01	irgsp1_rep	CDS	3085821	3085988	.	-	0	Parent=Os01t0158900-01
Chr01	irgsp1_rep	three_prime_UTR	3085452	3085820	.	-	.	Parent=Os01t0158900-01
Chr01	irgsp1_rep	mRNA	3085626	3087814	.	-	.	ID=Os01t0158900-02;Name=Os01t0158900-02;Locus_id=Os01g0158900;Note=Hypothetical conserved gene.;Transcript_evidence=AK059497 (DDBJ%2C Best hit);ORF_evidence=B8ADD8 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C NF-X1-type (IPR000967);NIAS_FLcDNA=001-028-H10;Expression=AK059497;TENOR=Os01t0158900-02;KEGG=Os01t0158900-02
Chr01	irgsp1_rep	five_prime_UTR	3087814	3087814	.	-	.	Parent=Os01t0158900-02
Chr01	irgsp1_rep	CDS	3087709	3087813	.	-	0	Parent=Os01t0158900-02
Chr01	irgsp1_rep	CDS	3087410	3087616	.	-	0	Parent=Os01t0158900-02
Chr01	irgsp1_rep	CDS	3087085	3087275	.	-	0	Parent=Os01t0158900-02
Chr01	irgsp1_rep	CDS	3086904	3086985	.	-	1	Parent=Os01t0158900-02
Chr01	irgsp1_rep	CDS	3086270	3086476	.	-	0	Parent=Os01t0158900-02
Chr01	irgsp1_rep	CDS	3086069	3086155	.	-	0	Parent=Os01t0158900-02
Chr01	irgsp1_rep	CDS	3085821	3085988	.	-	0	Parent=Os01t0158900-02
Chr01	irgsp1_rep	three_prime_UTR	3085626	3085820	.	-	.	Parent=Os01t0158900-02
Chr01	irgsp1_rep	mRNA	3091435	3092698	.	-	.	ID=Os01t0159000-01;Name=Os01t0159000-01;Locus_id=Os01g0159000;RAP-DB Gene Symbol Synonym(s)=OsDOG1L-1;RAP-DB Gene Name Synonym(s)=DOG1-like-1;Oryzabase Gene Symbol Synonym(s)=OsDOG1L-2%2C DOG1L-2;Oryzabase Gene Name Synonym(s)=OsDOG1-like-2%2C DOG1-like-2;Note=Similar to cDNA clone:J023049H21%2C full insert sequence.;Transcript_evidence=AK070330 (DDBJ%2C Best hit),AK106273 (DDBJ%2C Best hit);ORF_evidence=A2WKY1 (UniProt);NIAS_FLcDNA=J023049H21,002-100-G11;Manual Curation=August 21%2C 2020;Literature_PMID=32771171;Oryzabase=14286;Expression=AK070330;TENOR=Os01t0159000-01;KEGG=Os01t0159000-01
Chr01	irgsp1_rep	five_prime_UTR	3092631	3092698	.	-	.	Parent=Os01t0159000-01
Chr01	irgsp1_rep	CDS	3092085	3092630	.	-	0	Parent=Os01t0159000-01
Chr01	irgsp1_rep	three_prime_UTR	3091435	3092084	.	-	.	Parent=Os01t0159000-01
Chr01	irgsp1_rep	mRNA	3097415	3098160	.	-	.	ID=Os01t0159200-01;Name=Os01t0159200-01;Locus_id=Os01g0159200;CGSNL Gene Symbol=FLA8;CGSNL Gene Name=FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 8;Oryzabase Gene Symbol Synonym(s)=OsFLA8;Oryzabase Gene Name Synonym(s)=fasciclin-like AGP 8%2C fasciclin-like arabinogalactan protein 8;Note=Similar to Fasciclin-like protein FLA18.;Transcript_evidence=AK108308 (DDBJ%2C Best hit);ORF_evidence=Q06I88 (UniProt);InterPro=FAS1 domain (IPR000782);NIAS_FLcDNA=002-141-F08;Oryzabase=11343;TENOR=Os01t0159200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	3098160	3098160	.	-	.	Parent=Os01t0159200-01
Chr01	irgsp1_rep	CDS	3097593	3098159	.	-	0	Parent=Os01t0159200-01
Chr01	irgsp1_rep	three_prime_UTR	3097415	3097592	.	-	.	Parent=Os01t0159200-01
Chr01	irgsp1_rep	mRNA	3097610	3098332	.	+	.	ID=Os01t0159250-00;Name=Os01t0159250-00;Locus_id=Os01g0159250;Note=Hypothetical protein.;Transcript_evidence=FP097651 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0159250-00
Chr01	irgsp1_rep	five_prime_UTR	3097610	3097610	.	+	.	Parent=Os01t0159250-00
Chr01	irgsp1_rep	CDS	3097611	3097796	.	+	0	Parent=Os01t0159250-00
Chr01	irgsp1_rep	CDS	3098130	3098332	.	+	0	Parent=Os01t0159250-00
Chr01	irgsp1_rep	mRNA	3100294	3105226	.	-	.	ID=Os01t0159300-01;Name=Os01t0159300-01;Locus_id=Os01g0159300;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK073728 (DDBJ%2C Best hit);ORF_evidence=Q9LGM4 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J033058G15;Expression=AK073728;TENOR=Os01t0159300-01;KEGG=Os01t0159300-01
Chr01	irgsp1_rep	five_prime_UTR	3104980	3105226	.	-	.	Parent=Os01t0159300-01
Chr01	irgsp1_rep	five_prime_UTR	3102768	3102799	.	-	.	Parent=Os01t0159300-01
Chr01	irgsp1_rep	CDS	3102683	3102767	.	-	0	Parent=Os01t0159300-01
Chr01	irgsp1_rep	CDS	3101958	3102599	.	-	2	Parent=Os01t0159300-01
Chr01	irgsp1_rep	CDS	3101171	3101577	.	-	2	Parent=Os01t0159300-01
Chr01	irgsp1_rep	CDS	3100991	3101089	.	-	0	Parent=Os01t0159300-01
Chr01	irgsp1_rep	CDS	3100758	3100904	.	-	0	Parent=Os01t0159300-01
Chr01	irgsp1_rep	CDS	3100509	3100634	.	-	0	Parent=Os01t0159300-01
Chr01	irgsp1_rep	three_prime_UTR	3100294	3100508	.	-	.	Parent=Os01t0159300-01
Chr01	irgsp1_rep	mRNA	3108117	3113940	.	-	.	ID=Os01t0159400-01;Name=Os01t0159400-01;Locus_id=Os01g0159400;Note=Similar to Acyl-coenzyme A oxidase 4%2C peroxisomal (EC 1.3.3.6) (AOX 4) (Short- chain acyl-CoA oxidase) (SAOX) (AtCX4) (G6p) (AtG6).;Transcript_evidence=AK100550 (DDBJ%2C Best hit);ORF_evidence=B6TNB5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995),Molecular Function: oxidoreductase activity%2C acting on the CH-CH group of donors (GO:0016627),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Acyl-CoA dehydrogenase%2C conserved site (IPR006089),Acyl-CoA oxidase/dehydrogenase%2C type 1 (IPR006090),Acyl-CoA oxidase/dehydrogenase%2C central domain (IPR006091),Acyl-CoA dehydrogenase%2C N-terminal (IPR006092),Acyl-CoA dehydrogenase/oxidase C-terminal (IPR009075),Acyl-CoA dehydrogenase/oxidase (IPR009100),Acyl-CoA dehydrogenase/oxidase%2C N-terminal (IPR013786);NIAS_FLcDNA=J023103E08;Expression=AK100550;TENOR=Os01t0159400-01;KEGG=Os01t0159400-01 (EC:1.3.3.6)
Chr01	irgsp1_rep	five_prime_UTR	3113816	3113940	.	-	.	Parent=Os01t0159400-01
Chr01	irgsp1_rep	CDS	3113800	3113815	.	-	0	Parent=Os01t0159400-01
Chr01	irgsp1_rep	CDS	3113572	3113673	.	-	2	Parent=Os01t0159400-01
Chr01	irgsp1_rep	CDS	3112169	3112275	.	-	2	Parent=Os01t0159400-01
Chr01	irgsp1_rep	CDS	3111795	3111872	.	-	0	Parent=Os01t0159400-01
Chr01	irgsp1_rep	CDS	3110748	3110871	.	-	0	Parent=Os01t0159400-01
Chr01	irgsp1_rep	CDS	3110545	3110618	.	-	2	Parent=Os01t0159400-01
Chr01	irgsp1_rep	CDS	3110384	3110443	.	-	0	Parent=Os01t0159400-01
Chr01	irgsp1_rep	CDS	3109766	3109875	.	-	0	Parent=Os01t0159400-01
Chr01	irgsp1_rep	CDS	3109514	3109673	.	-	1	Parent=Os01t0159400-01
Chr01	irgsp1_rep	CDS	3109341	3109417	.	-	0	Parent=Os01t0159400-01
Chr01	irgsp1_rep	CDS	3109082	3109253	.	-	1	Parent=Os01t0159400-01
Chr01	irgsp1_rep	CDS	3108879	3108971	.	-	0	Parent=Os01t0159400-01
Chr01	irgsp1_rep	CDS	3108668	3108796	.	-	0	Parent=Os01t0159400-01
Chr01	irgsp1_rep	three_prime_UTR	3108117	3108667	.	-	.	Parent=Os01t0159400-01
Chr01	irgsp1_rep	mRNA	3122888	3124051	.	+	.	ID=Os01t0159500-01;Name=Os01t0159500-01;Locus_id=Os01g0159500;Note=Rapid ALkalinization Factor domain containing protein.;Transcript_evidence=AK069408 (DDBJ%2C Best hit);ORF_evidence=A2WKY5 (UniProt);InterPro=Rapid ALkalinization Factor (IPR008801);NIAS_FLcDNA=J023014A07;TENOR=Os01t0159500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	3122888	3123611	.	+	.	Parent=Os01t0159500-01
Chr01	irgsp1_rep	CDS	3123612	3123776	.	+	0	Parent=Os01t0159500-01
Chr01	irgsp1_rep	three_prime_UTR	3123777	3124051	.	+	.	Parent=Os01t0159500-01
Chr01	irgsp1_rep	mRNA	3124369	3125331	.	-	.	ID=Os01t0159600-01;Name=Os01t0159600-01;Locus_id=Os01g0159600;RAP-DB Gene Symbol Synonym(s)=OsLEA1a;RAP-DB Gene Name Synonym(s)=late embryogenesis abundant 1a;CGSNL Gene Symbol=LEA20;CGSNL Gene Name=LATE EMBRYOGENESIS ABUNDANT PROTEIN 20;Oryzabase Gene Symbol Synonym(s)=OsLEA20%2C OsLEA1%2C OsLEA1a;Oryzabase Gene Name Synonym(s)=late embryogenesis abundant protein 20%2C Late embryogenesis-abundant 1%2C %2C Late embryogenesis-abundant 1a;Note=Early methionine (Em)-like protein%2C Late embryogenesis abundant (LEA) protein;Transcript_evidence=AK122153,AK064055;ORF_evidence=Q5ZEL0;InterPro=Late embryogenesis abundant protein%2C LEA_5 subgroup (IPR038956);NIAS_FLcDNA=J033143J06,001-125-F04;Manual Curation=September 28%2C 2020;Literature_PMID=21097897;Oryzabase=10186;Expression=AK122153;TENOR=Os01t0159600-01;KEGG=Os01t0159600-01
Chr01	irgsp1_rep	five_prime_UTR	3125201	3125331	.	-	.	Parent=Os01t0159600-01
Chr01	irgsp1_rep	CDS	3125052	3125200	.	-	0	Parent=Os01t0159600-01
Chr01	irgsp1_rep	CDS	3124807	3124939	.	-	1	Parent=Os01t0159600-01
Chr01	irgsp1_rep	three_prime_UTR	3124369	3124806	.	-	.	Parent=Os01t0159600-01
Chr01	irgsp1_rep	mRNA	3129056	3130649	.	+	.	ID=Os01t0159800-01;Name=Os01t0159800-01;Locus_id=Os01g0159800;Oryzabase Gene Symbol Synonym(s)=OsbHLH035%2C bHLH035%2C OsbHLH35%2C bHLH35;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 035;Note=Similar to DNA binding protein.;Transcript_evidence=AK106292 (DDBJ%2C Best hit);ORF_evidence=NP_001152068.1 (RefSeq);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=002-101-B04;Oryzabase=15326;TENOR=Os01t0159800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	3129056	3129113	.	+	.	Parent=Os01t0159800-01
Chr01	irgsp1_rep	five_prime_UTR	3129235	3129285	.	+	.	Parent=Os01t0159800-01
Chr01	irgsp1_rep	CDS	3129286	3129699	.	+	0	Parent=Os01t0159800-01
Chr01	irgsp1_rep	three_prime_UTR	3129700	3130649	.	+	.	Parent=Os01t0159800-01
Chr01	irgsp1_rep	mRNA	3129106	3130722	.	+	.	ID=Os01t0159800-02;Name=Os01t0159800-02;Locus_id=Os01g0159800;RAP-DB Gene Symbol Synonym(s)=OsbHLH035;RAP-DB Gene Name Synonym(s)=basic helix-loop-helix protein 035;Oryzabase Gene Symbol Synonym(s)=OsbHLH035%2C bHLH035%2C OsbHLH35%2C bHLH35;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 035;Note=Basic helix-loop-helix (bHLH) transcription factor%2C Mediation of seed germination%2C Seedling recovery from salt stress;Transcript_evidence=Inferred from literature;ORF_evidence=Q7F7Z2;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Helix-loop-helix DNA-binding domain superfamily (IPR036638),Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);Manual Curation=September 13%2C 2018;Literature_PMID=30203325;Oryzabase=15326;Subcellular location=nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	3129106	3129285	.	+	.	Parent=Os01t0159800-02
Chr01	irgsp1_rep	CDS	3129286	3129573	.	+	0	Parent=Os01t0159800-02
Chr01	irgsp1_rep	CDS	3129967	3130455	.	+	0	Parent=Os01t0159800-02
Chr01	irgsp1_rep	three_prime_UTR	3130456	3130722	.	+	.	Parent=Os01t0159800-02
Chr01	irgsp1_rep	mRNA	3136320	3140217	.	-	.	ID=Os01t0160100-01;Name=Os01t0160100-01;Locus_id=Os01g0160100;Note=Similar to Pyruvate decarboxylase isozyme 2 (EC 4.1.1.1) (PDC) (Fragment).;Transcript_evidence=AK069905 (DDBJ%2C Best hit);ORF_evidence=B6TXL9 (UniProt);GO=Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: carboxy-lyase activity (GO:0016831),Molecular Function: thiamine pyrophosphate binding (GO:0030976);InterPro=Thiamine pyrophosphate enzyme%2C C-terminal TPP-binding (IPR011766),Thiamine pyrophosphate enzyme%2C central domain (IPR012000),Thiamine pyrophosphate enzyme%2C N-terminal TPP-binding domain (IPR012001),Pyruvate decarboxylase/indolepyruvate decarboxylase (IPR012110);NIAS_FLcDNA=J023034H21;Expression=AK069905;TENOR=Os01t0160100-01;KEGG=Os01t0160100-01 (EC:4.1.1.1)
Chr01	irgsp1_rep	five_prime_UTR	3140099	3140217	.	-	.	Parent=Os01t0160100-01
Chr01	irgsp1_rep	CDS	3139598	3140098	.	-	0	Parent=Os01t0160100-01
Chr01	irgsp1_rep	CDS	3138146	3138309	.	-	0	Parent=Os01t0160100-01
Chr01	irgsp1_rep	CDS	3137398	3138048	.	-	1	Parent=Os01t0160100-01
Chr01	irgsp1_rep	CDS	3137037	3137154	.	-	1	Parent=Os01t0160100-01
Chr01	irgsp1_rep	CDS	3136759	3136947	.	-	0	Parent=Os01t0160100-01
Chr01	irgsp1_rep	CDS	3136502	3136672	.	-	0	Parent=Os01t0160100-01
Chr01	irgsp1_rep	three_prime_UTR	3136320	3136501	.	-	.	Parent=Os01t0160100-01
Chr01	irgsp1_rep	mRNA	3136504	3140130	.	+	.	ID=Os01t0160150-00;Name=Os01t0160150-00;Locus_id=Os01g0160150;Note=Hypothetical protein.;Transcript_evidence=tplb0035b22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0160150-00
Chr01	irgsp1_rep	five_prime_UTR	3136504	3136653	.	+	.	Parent=Os01t0160150-00
Chr01	irgsp1_rep	five_prime_UTR	3136742	3136951	.	+	.	Parent=Os01t0160150-00
Chr01	irgsp1_rep	five_prime_UTR	3137044	3137150	.	+	.	Parent=Os01t0160150-00
Chr01	irgsp1_rep	five_prime_UTR	3137390	3138029	.	+	.	Parent=Os01t0160150-00
Chr01	irgsp1_rep	five_prime_UTR	3138130	3138311	.	+	.	Parent=Os01t0160150-00
Chr01	irgsp1_rep	five_prime_UTR	3139507	3139663	.	+	.	Parent=Os01t0160150-00
Chr01	irgsp1_rep	CDS	3139664	3140130	.	+	0	Parent=Os01t0160150-00
Chr01	irgsp1_rep	mRNA	3143601	3146812	.	-	.	ID=Os01t0160200-02;Name=Os01t0160200-02;Locus_id=Os01g0160200;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=AK102533 (DDBJ%2C Best hit),AK073444 (DDBJ%2C Best hit);ORF_evidence=Q9LGL4 (UniProt);NIAS_FLcDNA=J033096F04,J033044L19;Expression=AK102533;TENOR=Os01t0160200-02;KEGG=Os01t0160200-02
Chr01	irgsp1_rep	five_prime_UTR	3146761	3146812	.	-	.	Parent=Os01t0160200-02
Chr01	irgsp1_rep	CDS	3143659	3146760	.	-	0	Parent=Os01t0160200-02
Chr01	irgsp1_rep	three_prime_UTR	3143601	3143658	.	-	.	Parent=Os01t0160200-02
Chr01	irgsp1_rep	mRNA	3182139	3185207	.	+	.	ID=Os01t0160700-00;Name=Os01t0160700-00;Locus_id=Os01g0160700;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QW19 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);TENOR=Os01t0160700-00;KEGG=Os01t0160700-00
Chr01	irgsp1_rep	CDS	3182139	3185207	.	+	0	Parent=Os01t0160700-00
Chr01	irgsp1_rep	mRNA	3189117	3190330	.	-	.	ID=Os01t0160800-01;Name=Os01t0160800-01;Locus_id=Os01g0160800;RAP-DB Gene Symbol Synonym(s)=OsRIP1;RAP-DB Gene Name Synonym(s)=ribosome-inactivating protein 1;CGSNL Gene Symbol=RIP1;CGSNL Gene Name=RIBOSOME-INACTIVATING PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsRIP1;Oryzabase Gene Name Synonym(s)=ribosome-inactivating protein 1;Note=Ribosome-inactivating protein%2C Defense against herbivorous insects;Transcript_evidence=AK103707,AK287584;ORF_evidence=Q9LGK6;GO=Biological Process: negative regulation of translation (GO:0017148),Molecular Function: rRNA N-glycosylase activity (GO:0030598);InterPro=Ribosome-inactivating protein%2C subdomain 1 (IPR016138),Ribosome-inactivating protein superfamily (IPR036041),Ribosome-inactivating protein%2C subdomain 2 (IPR016139),Ribosome-inactivating protein (IPR001574),Ribosome-inactivating protein type 1/2 (IPR017989);NIAS_FLcDNA=J033136O07,J065044J10;Manual Curation=November 18%2C 2019;Literature_PMID=31731237;Oryzabase=23345;Expression=AK103707;TENOR=Os01t0160800-01;KEGG=Os01t0160800-01 (EC:3.2.2.22)
Chr01	irgsp1_rep	five_prime_UTR	3190255	3190330	.	-	.	Parent=Os01t0160800-01
Chr01	irgsp1_rep	CDS	3189406	3190254	.	-	0	Parent=Os01t0160800-01
Chr01	irgsp1_rep	three_prime_UTR	3189117	3189405	.	-	.	Parent=Os01t0160800-01
Chr01	irgsp1_rep	mRNA	3201220	3204252	.	+	.	ID=Os01t0161000-00;Name=Os01t0161000-00;Locus_id=Os01g0161000;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001042092.2 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);TENOR=Os01t0161000-00;KEGG=Os01t0161000-00
Chr01	irgsp1_rep	CDS	3201220	3201634	.	+	0	Parent=Os01t0161000-00
Chr01	irgsp1_rep	CDS	3202046	3202342	.	+	2	Parent=Os01t0161000-00
Chr01	irgsp1_rep	CDS	3202958	3204252	.	+	2	Parent=Os01t0161000-00
Chr01	irgsp1_rep	mRNA	3222100	3226518	.	-	.	ID=Os01t0161200-01;Name=Os01t0161200-01;Locus_id=Os01g0161200;Note=Hypothetical protein.;Transcript_evidence=AK065680 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013036F22;Expression=AK065680;TENOR=Os01t0161200-01;KEGG=Os01t0161200-01
Chr01	irgsp1_rep	five_prime_UTR	3226508	3226518	.	-	.	Parent=Os01t0161200-01
Chr01	irgsp1_rep	CDS	3226076	3226507	.	-	0	Parent=Os01t0161200-01
Chr01	irgsp1_rep	three_prime_UTR	3225993	3226075	.	-	.	Parent=Os01t0161200-01
Chr01	irgsp1_rep	three_prime_UTR	3225725	3225861	.	-	.	Parent=Os01t0161200-01
Chr01	irgsp1_rep	three_prime_UTR	3222100	3224538	.	-	.	Parent=Os01t0161200-01
Chr01	irgsp1_rep	mRNA	3222303	3225613	.	+	.	ID=Os01t0161300-00;Name=Os01t0161300-00;Locus_id=Os01g0161300;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5VR20 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);TENOR=Os01t0161300-00;KEGG=Os01t0161300-00
Chr01	irgsp1_rep	CDS	3222303	3223602	.	+	0	Parent=Os01t0161300-00
Chr01	irgsp1_rep	CDS	3223710	3224114	.	+	2	Parent=Os01t0161300-00
Chr01	irgsp1_rep	CDS	3224274	3225613	.	+	2	Parent=Os01t0161300-00
Chr01	irgsp1_rep	mRNA	3243674	3244422	.	-	.	ID=Os01t0162001-00;Name=Os01t0162001-00;Locus_id=Os01g0162001;Note=Hypothetical gene.;Transcript_evidence=CT834812 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os01t0162001-00;KEGG=Os01t0162001-00
Chr01	irgsp1_rep	five_prime_UTR	3244127	3244422	.	-	.	Parent=Os01t0162001-00
Chr01	irgsp1_rep	five_prime_UTR	3244089	3244109	.	-	.	Parent=Os01t0162001-00
Chr01	irgsp1_rep	CDS	3243783	3244088	.	-	0	Parent=Os01t0162001-00
Chr01	irgsp1_rep	three_prime_UTR	3243674	3243782	.	-	.	Parent=Os01t0162001-00
Chr01	irgsp1_rep	mRNA	3244945	3245443	.	-	.	ID=Os01t0162101-00;Name=Os01t0162101-00;Locus_id=Os01g0162101;Note=Similar to MATE.;Transcript_evidence=CT834828 (DDBJ%2C Best hit);ORF_evidence=A7XZS5 (UniProt);TENOR=Os01t0162101-00;KEGG=Os01t0162101-00
Chr01	irgsp1_rep	five_prime_UTR	3245347	3245443	.	-	.	Parent=Os01t0162101-00
Chr01	irgsp1_rep	CDS	3245296	3245346	.	-	0	Parent=Os01t0162101-00
Chr01	irgsp1_rep	CDS	3245129	3245194	.	-	0	Parent=Os01t0162101-00
Chr01	irgsp1_rep	three_prime_UTR	3244945	3245128	.	-	.	Parent=Os01t0162101-00
Chr01	irgsp1_rep	mRNA	3251426	3252724	.	+	.	ID=Os01t0162200-00;Name=Os01t0162200-00;Locus_id=Os01g0162200;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9ET04 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);TENOR=Os01t0162200-00
Chr01	irgsp1_rep	CDS	3251426	3252724	.	+	0	Parent=Os01t0162200-00
Chr01	irgsp1_rep	mRNA	3256822	3257901	.	+	.	ID=Os01t0162300-01;Name=Os01t0162300-01;Locus_id=Os01g0162300;Oryzabase Gene Name Synonym(s)=leucine-rich repeat (LRR)-containing protein;Note=Leucine-rich repeat%2C plant specific containing protein.;Transcript_evidence=AK108785 (DDBJ%2C Best hit);ORF_evidence=A2ZPK2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=002-151-A12;Oryzabase=22752;Expression=AK108785;TENOR=Os01t0162300-01;KEGG=Os01t0162300-01
Chr01	irgsp1_rep	CDS	3256822	3257796	.	+	0	Parent=Os01t0162300-01
Chr01	irgsp1_rep	three_prime_UTR	3257797	3257901	.	+	.	Parent=Os01t0162300-01
Chr01	irgsp1_rep	mRNA	3257944	3258889	.	+	.	ID=Os01t0162400-01;Name=Os01t0162400-01;Locus_id=Os01g0162400;Note=Conserved hypothetical protein.;Transcript_evidence=AK108484 (DDBJ%2C Best hit);ORF_evidence=A2ZPK2 (UniProt);NIAS_FLcDNA=002-143-F07;TENOR=Os01t0162400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	3257944	3257944	.	+	.	Parent=Os01t0162400-01
Chr01	irgsp1_rep	CDS	3257945	3258577	.	+	0	Parent=Os01t0162400-01
Chr01	irgsp1_rep	three_prime_UTR	3258578	3258889	.	+	.	Parent=Os01t0162400-01
Chr01	irgsp1_rep	mRNA	3259516	3262661	.	+	.	ID=Os01t0162500-01;Name=Os01t0162500-01;Locus_id=Os01g0162500;Note=Leucine-rich repeat-containing N-terminal%2C type 2 domain containing protein.;Transcript_evidence=AK242779 (DDBJ%2C Best hit);ORF_evidence=A2WKZ8 (UniProt);InterPro=Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J090054M21;TENOR=Os01t0162500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	3259516	3260247	.	+	0	Parent=Os01t0162500-01
Chr01	irgsp1_rep	three_prime_UTR	3260248	3262661	.	+	.	Parent=Os01t0162500-01
Chr01	irgsp1_rep	mRNA	3272800	3274386	.	-	.	ID=Os01t0162701-01;Name=Os01t0162701-01;Locus_id=Os01g0162701;Note=Hypothetical gene.;Transcript_evidence=AK241400 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065158M19;TENOR=Os01t0162701-01;KEGG=Os01t0162701-01
Chr01	irgsp1_rep	five_prime_UTR	3273355	3274386	.	-	.	Parent=Os01t0162701-01
Chr01	irgsp1_rep	CDS	3272986	3273354	.	-	0	Parent=Os01t0162701-01
Chr01	irgsp1_rep	three_prime_UTR	3272800	3272985	.	-	.	Parent=Os01t0162701-01
Chr01	irgsp1_rep	mRNA	3272839	3276375	.	+	.	ID=Os01t0162800-00;Name=Os01t0162800-00;Locus_id=Os01g0162800;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9ET06 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);TENOR=Os01t0162800-00;KEGG=Os01t0162800-00
Chr01	irgsp1_rep	CDS	3272839	3274192	.	+	0	Parent=Os01t0162800-00
Chr01	irgsp1_rep	CDS	3274481	3275167	.	+	2	Parent=Os01t0162800-00
Chr01	irgsp1_rep	CDS	3275318	3276375	.	+	2	Parent=Os01t0162800-00
Chr01	irgsp1_rep	mRNA	3282977	3284997	.	-	.	ID=Os01t0162900-01;Name=Os01t0162900-01;Locus_id=Os01g0162900;Note=Hypothetical protein.;Transcript_evidence=AK064678 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-115-H01;Expression=AK064678;TENOR=Os01t0162900-01;KEGG=Os01t0162900-01
Chr01	irgsp1_rep	five_prime_UTR	3284792	3284997	.	-	.	Parent=Os01t0162900-01
Chr01	irgsp1_rep	five_prime_UTR	3283680	3284699	.	-	.	Parent=Os01t0162900-01
Chr01	irgsp1_rep	CDS	3283176	3283679	.	-	0	Parent=Os01t0162900-01
Chr01	irgsp1_rep	three_prime_UTR	3282977	3283175	.	-	.	Parent=Os01t0162900-01
Chr01	irgsp1_rep	mRNA	3283266	3286357	.	+	.	ID=Os01t0163000-01;Name=Os01t0163000-01;Locus_id=Os01g0163000;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=AK072107 (DDBJ%2C Best hit);ORF_evidence=Q2QW19 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J013118K10;Expression=AK072107;TENOR=Os01t0163000-01;KEGG=Os01t0163000-01
Chr01	irgsp1_rep	five_prime_UTR	3283266	3283266	.	+	.	Parent=Os01t0163000-01
Chr01	irgsp1_rep	CDS	3283267	3286185	.	+	0	Parent=Os01t0163000-01
Chr01	irgsp1_rep	three_prime_UTR	3286186	3286357	.	+	.	Parent=Os01t0163000-01
Chr01	irgsp1_rep	mRNA	3291241	3293494	.	+	.	ID=Os01t0163450-01;Name=Os01t0163450-01;Locus_id=Os01g0163450;Note=Hypothetical gene.;Transcript_evidence=AK288421 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090032D24;TENOR=Os01t0163450-01;KEGG=Os01t0163450-01
Chr01	irgsp1_rep	five_prime_UTR	3291241	3291241	.	+	.	Parent=Os01t0163450-01
Chr01	irgsp1_rep	CDS	3291242	3291454	.	+	0	Parent=Os01t0163450-01
Chr01	irgsp1_rep	three_prime_UTR	3291455	3293494	.	+	.	Parent=Os01t0163450-01
Chr01	irgsp1_rep	mRNA	3293852	3294105	.	-	.	ID=Os01t0163616-00;Name=Os01t0163616-00;Locus_id=Os01g0163616;Note=Conserved hypothetical protein.;Transcript_evidence=EU946325 (DDBJ);ORF_evidence=A2YB65 (UniProt);TENOR=Os01t0163616-00
Chr01	irgsp1_rep	CDS	3293956	3294105	.	-	0	Parent=Os01t0163616-00
Chr01	irgsp1_rep	three_prime_UTR	3293852	3293955	.	-	.	Parent=Os01t0163616-00
Chr01	irgsp1_rep	mRNA	3312670	3313206	.	-	.	ID=Os01t0164075-00;Name=Os01t0164075-00;Locus_id=Os01g0164075;Note=Pollen Ole e 1 allergen/extensin domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2ZPL3 (UniProt);InterPro=Pollen Ole e 1 allergen/extensin (IPR006041);TENOR=Os01t0164075-00
Chr01	irgsp1_rep	CDS	3312670	3313206	.	-	0	Parent=Os01t0164075-00
Chr01	irgsp1_rep	mRNA	3320451	3321035	.	-	.	ID=Os01t0164300-00;Name=Os01t0164300-00;Locus_id=Os01g0164300;Oryzabase Gene Name Synonym(s)=Extensin family protein;Note=Pollen Ole e 1 allergen/extensin domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5VR17 (UniProt);InterPro=Pollen Ole e 1 allergen/extensin (IPR006041);Oryzabase=21932;TENOR=Os01t0164300-00
Chr01	irgsp1_rep	CDS	3320451	3321035	.	-	0	Parent=Os01t0164300-00
Chr01	irgsp1_rep	mRNA	3324235	3327122	.	+	.	ID=Os01t0164400-01;Name=Os01t0164400-01;Locus_id=Os01g0164400;Note=Similar to TAF15b (TBP-ASSOCIATED FACTOR 15b)%3B binding / nucleic acid binding / nucleotide binding / zinc ion binding.;Transcript_evidence=AK061428 (DDBJ%2C Best hit);ORF_evidence=NP_851215.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=006-306-H02;TENOR=Os01t0164400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	3324235	3324508	.	+	.	Parent=Os01t0164400-01
Chr01	irgsp1_rep	CDS	3324509	3324748	.	+	0	Parent=Os01t0164400-01
Chr01	irgsp1_rep	CDS	3325504	3325654	.	+	0	Parent=Os01t0164400-01
Chr01	irgsp1_rep	CDS	3325740	3325818	.	+	2	Parent=Os01t0164400-01
Chr01	irgsp1_rep	CDS	3326826	3326934	.	+	1	Parent=Os01t0164400-01
Chr01	irgsp1_rep	three_prime_UTR	3326935	3327122	.	+	.	Parent=Os01t0164400-01
Chr01	irgsp1_rep	mRNA	3328572	3331963	.	-	.	ID=Os01t0164500-01;Name=Os01t0164500-01;Locus_id=Os01g0164500;Oryzabase Gene Symbol Synonym(s)=BIP115%2C OsRH18;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 115%2C BRI1-interacting protein 115%2C brassinosteroid receptor kinase-interacting protein 115%2C RNA helicase 18;Note=Similar to ATP-dependent RNA helicase-like protein.;Transcript_evidence=AK068747 (DDBJ%2C Best hit),AK103737 (DDBJ%2C Best hit);ORF_evidence=NP_001147316.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=RNA helicase%2C ATP-dependent%2C DEAD-box%2C conserved site (IPR000629),Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=J013162N07,J033138I10;Oryzabase=13678;TENOR=Os01t0164500-01
Chr01	irgsp1_rep	five_prime_UTR	3331923	3331963	.	-	.	Parent=Os01t0164500-01
Chr01	irgsp1_rep	CDS	3331635	3331922	.	-	0	Parent=Os01t0164500-01
Chr01	irgsp1_rep	CDS	3331271	3331507	.	-	0	Parent=Os01t0164500-01
Chr01	irgsp1_rep	CDS	3330913	3331173	.	-	0	Parent=Os01t0164500-01
Chr01	irgsp1_rep	CDS	3330661	3330740	.	-	0	Parent=Os01t0164500-01
Chr01	irgsp1_rep	CDS	3330450	3330555	.	-	1	Parent=Os01t0164500-01
Chr01	irgsp1_rep	CDS	3330240	3330353	.	-	0	Parent=Os01t0164500-01
Chr01	irgsp1_rep	CDS	3330061	3330159	.	-	0	Parent=Os01t0164500-01
Chr01	irgsp1_rep	CDS	3329820	3329909	.	-	0	Parent=Os01t0164500-01
Chr01	irgsp1_rep	CDS	3329438	3329688	.	-	0	Parent=Os01t0164500-01
Chr01	irgsp1_rep	CDS	3328727	3329144	.	-	1	Parent=Os01t0164500-01
Chr01	irgsp1_rep	three_prime_UTR	3328572	3328726	.	-	.	Parent=Os01t0164500-01
Chr01	irgsp1_rep	mRNA	3332952	3336035	.	-	.	ID=Os01t0164600-01;Name=Os01t0164600-01;Locus_id=Os01g0164600;Oryzabase Gene Symbol Synonym(s)=OsPP2C01%2C PP2C01%2C OsPP2C1%2C PP2C1%2C OsPP1%2C OsPBCP%2C PBCP;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C01%2C protein phosphatase 2C 01%2C protein phosphatase 2C1%2C protein phosphatase 2C 1%2C protein phosphatase 1%2C PHOTOSYSTEM II CORE PHOSPHATASE;Note=Protein phosphatase 2C-related domain containing protein.;Transcript_evidence=AK099645 (DDBJ%2C Best hit);ORF_evidence=NP_001148466.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932);NIAS_FLcDNA=J013064A15;Oryzabase=17880;Expression=AK099645;TENOR=Os01t0164600-01;KEGG=Os01t0164600-01
Chr01	irgsp1_rep	five_prime_UTR	3335959	3336035	.	-	.	Parent=Os01t0164600-01
Chr01	irgsp1_rep	CDS	3335843	3335958	.	-	0	Parent=Os01t0164600-01
Chr01	irgsp1_rep	CDS	3335365	3335416	.	-	1	Parent=Os01t0164600-01
Chr01	irgsp1_rep	CDS	3335158	3335237	.	-	0	Parent=Os01t0164600-01
Chr01	irgsp1_rep	CDS	3334872	3334953	.	-	1	Parent=Os01t0164600-01
Chr01	irgsp1_rep	CDS	3334712	3334782	.	-	0	Parent=Os01t0164600-01
Chr01	irgsp1_rep	CDS	3334555	3334634	.	-	1	Parent=Os01t0164600-01
Chr01	irgsp1_rep	CDS	3334389	3334486	.	-	2	Parent=Os01t0164600-01
Chr01	irgsp1_rep	CDS	3333900	3334023	.	-	0	Parent=Os01t0164600-01
Chr01	irgsp1_rep	CDS	3333716	3333798	.	-	2	Parent=Os01t0164600-01
Chr01	irgsp1_rep	CDS	3333570	3333618	.	-	0	Parent=Os01t0164600-01
Chr01	irgsp1_rep	CDS	3333414	3333481	.	-	2	Parent=Os01t0164600-01
Chr01	irgsp1_rep	CDS	3333238	3333330	.	-	0	Parent=Os01t0164600-01
Chr01	irgsp1_rep	three_prime_UTR	3332952	3333237	.	-	.	Parent=Os01t0164600-01
Chr01	irgsp1_rep	mRNA	3334870	3335479	.	+	.	ID=Os01t0164650-00;Name=Os01t0164650-00;Locus_id=Os01g0164650;Note=Non-protein coding transcript.;Transcript_evidence=EU944689 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0164650-00
Chr01	irgsp1_rep	exon	3334870	3335479	.	+	.	Parent=Os01t0164650-00
Chr01	irgsp1_rep	mRNA	3336250	3343220	.	+	.	ID=Os01t0164700-01;Name=Os01t0164700-01;Locus_id=Os01g0164700;Oryzabase Gene Symbol Synonym(s)=Get4;Oryzabase Gene Name Synonym(s)=Guided Entry of Tail-anchored protein 4%2C Get4 orthologue%2C Guided Entry of Tail-anchored protein 4 ortholog;Note=Uncharacterised protein family UPF0363 domain containing protein.;Transcript_evidence=AK066699 (DDBJ%2C Best hit);ORF_evidence=B9ET10 (UniProt);InterPro=Uncharacterised protein family UPF0363 (IPR007317);NIAS_FLcDNA=J013073F20;Oryzabase=22429;Expression=AK066699;TENOR=Os01t0164700-01;KEGG=Os01t0164700-01
Chr01	irgsp1_rep	five_prime_UTR	3336250	3336407	.	+	.	Parent=Os01t0164700-01
Chr01	irgsp1_rep	CDS	3336408	3336479	.	+	0	Parent=Os01t0164700-01
Chr01	irgsp1_rep	CDS	3337310	3337389	.	+	0	Parent=Os01t0164700-01
Chr01	irgsp1_rep	CDS	3337911	3338151	.	+	1	Parent=Os01t0164700-01
Chr01	irgsp1_rep	three_prime_UTR	3338152	3338423	.	+	.	Parent=Os01t0164700-01
Chr01	irgsp1_rep	three_prime_UTR	3338820	3338976	.	+	.	Parent=Os01t0164700-01
Chr01	irgsp1_rep	three_prime_UTR	3339510	3339600	.	+	.	Parent=Os01t0164700-01
Chr01	irgsp1_rep	three_prime_UTR	3339745	3340257	.	+	.	Parent=Os01t0164700-01
Chr01	irgsp1_rep	three_prime_UTR	3340820	3340948	.	+	.	Parent=Os01t0164700-01
Chr01	irgsp1_rep	three_prime_UTR	3341750	3341834	.	+	.	Parent=Os01t0164700-01
Chr01	irgsp1_rep	three_prime_UTR	3342264	3342344	.	+	.	Parent=Os01t0164700-01
Chr01	irgsp1_rep	three_prime_UTR	3342881	3343220	.	+	.	Parent=Os01t0164700-01
Chr01	irgsp1_rep	mRNA	3343531	3346705	.	-	.	ID=Os01t0164800-01;Name=Os01t0164800-01;Locus_id=Os01g0164800;Note=Breast cancer type 2 susceptibility protein domain containing protein.;Transcript_evidence=AK064572 (DDBJ%2C Best hit);ORF_evidence=Q5VQI6 (UniProt);InterPro=Breast cancer type 2 susceptibility protein (IPR015525),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=002-112-D11;Expression=AK064572;TENOR=Os01t0164800-01;KEGG=Os01t0164800-01
Chr01	irgsp1_rep	five_prime_UTR	3346704	3346705	.	-	.	Parent=Os01t0164800-01
Chr01	irgsp1_rep	CDS	3346587	3346703	.	-	0	Parent=Os01t0164800-01
Chr01	irgsp1_rep	CDS	3346176	3346318	.	-	0	Parent=Os01t0164800-01
Chr01	irgsp1_rep	CDS	3346039	3346101	.	-	1	Parent=Os01t0164800-01
Chr01	irgsp1_rep	CDS	3345743	3345956	.	-	1	Parent=Os01t0164800-01
Chr01	irgsp1_rep	CDS	3345339	3345506	.	-	0	Parent=Os01t0164800-01
Chr01	irgsp1_rep	CDS	3345203	3345259	.	-	0	Parent=Os01t0164800-01
Chr01	irgsp1_rep	three_prime_UTR	3345171	3345202	.	-	.	Parent=Os01t0164800-01
Chr01	irgsp1_rep	three_prime_UTR	3344948	3345063	.	-	.	Parent=Os01t0164800-01
Chr01	irgsp1_rep	three_prime_UTR	3343531	3343970	.	-	.	Parent=Os01t0164800-01
Chr01	irgsp1_rep	mRNA	3351926	3355066	.	-	.	ID=Os01t0164900-01;Name=Os01t0164900-01;Locus_id=Os01g0164900;Oryzabase Gene Symbol Synonym(s)=OsBRCA2;Note=BRCA2 repeat containing protein.;Transcript_evidence=AK064137 (DDBJ%2C Best hit);ORF_evidence=B9ET11 (UniProt);GO=Biological Process: double-strand break repair (GO:0006302),Molecular Function: protein binding (GO:0005515);InterPro=BRCA2 repeat (IPR002093),Breast cancer type 2 susceptibility protein (IPR015525);NIAS_FLcDNA=002-102-G12;Oryzabase=11611;TENOR=Os01t0164900-01
Chr01	irgsp1_rep	five_prime_UTR	3354984	3355066	.	-	.	Parent=Os01t0164900-01
Chr01	irgsp1_rep	CDS	3354806	3354983	.	-	0	Parent=Os01t0164900-01
Chr01	irgsp1_rep	CDS	3354650	3354706	.	-	2	Parent=Os01t0164900-01
Chr01	irgsp1_rep	CDS	3354333	3354503	.	-	2	Parent=Os01t0164900-01
Chr01	irgsp1_rep	CDS	3353841	3353906	.	-	2	Parent=Os01t0164900-01
Chr01	irgsp1_rep	CDS	3353600	3353704	.	-	2	Parent=Os01t0164900-01
Chr01	irgsp1_rep	CDS	3353302	3353436	.	-	2	Parent=Os01t0164900-01
Chr01	irgsp1_rep	CDS	3353080	3353205	.	-	2	Parent=Os01t0164900-01
Chr01	irgsp1_rep	CDS	3352847	3352972	.	-	2	Parent=Os01t0164900-01
Chr01	irgsp1_rep	CDS	3352662	3352757	.	-	2	Parent=Os01t0164900-01
Chr01	irgsp1_rep	CDS	3352450	3352575	.	-	2	Parent=Os01t0164900-01
Chr01	irgsp1_rep	CDS	3352167	3352301	.	-	2	Parent=Os01t0164900-01
Chr01	irgsp1_rep	CDS	3351926	3352049	.	-	2	Parent=Os01t0164900-01
Chr01	irgsp1_rep	mRNA	3356383	3358426	.	+	.	ID=Os01t0165000-01;Name=Os01t0165000-01;Locus_id=Os01g0165000;RAP-DB Gene Symbol Synonym(s)=DREB2A%2C OsDREB2A;RAP-DB Gene Name Synonym(s)=DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2A%2C Dehydration-responsive element-binding protein 2A;CGSNL Gene Symbol=DREB2A;CGSNL Gene Name=DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2A;Oryzabase Gene Symbol Synonym(s)=OsDREB2A%2C OsDREB2a%2C ERF40%2C OsERF#040%2C OsERF040%2C OsERF40%2C AP2/EREBP#167%2C AP2/EREBP167;Oryzabase Gene Name Synonym(s)=Dehydration-responsive element-binding protein 2A%2C Protein DREB2A%2C ethylene response factor 40%2C APETALA2/ethylene-responsive element binding protein 167;Note=Transcription factor%2C Dehydration and salt stress tolerance;Transcript_evidence=AK067313,AF300971;ORF_evidence=Q0JQF7;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700);InterPro=DNA-binding domain (IPR016177),AP2/ERF domain (IPR001471);NIAS_FLcDNA=J013106O15;Manual Curation=May 2%2C 2017;Literature_PMID=22078375,21528404,12609047;Oryzabase=3113;TENOR=Os01t0165000-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	3356383	3356781	.	+	.	Parent=Os01t0165000-01
Chr01	irgsp1_rep	CDS	3356782	3356828	.	+	0	Parent=Os01t0165000-01
Chr01	irgsp1_rep	CDS	3357445	3358222	.	+	1	Parent=Os01t0165000-01
Chr01	irgsp1_rep	three_prime_UTR	3358223	3358426	.	+	.	Parent=Os01t0165000-01
Chr01	irgsp1_rep	mRNA	3356461	3361204	.	+	.	ID=Os01t0165000-02;Name=Os01t0165000-02;Locus_id=Os01g0165000;CGSNL Gene Symbol=DREB2A;CGSNL Gene Name=DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2A;Oryzabase Gene Symbol Synonym(s)=OsDREB2A%2C OsDREB2a%2C ERF40%2C OsERF#040%2C OsERF040%2C OsERF40%2C AP2/EREBP#167%2C AP2/EREBP167;Oryzabase Gene Name Synonym(s)=Dehydration-responsive element-binding protein 2A%2C Protein DREB2A%2C ethylene response factor 40%2C APETALA2/ethylene-responsive element binding protein 167;Note=DRE binding protein 2.;Transcript_evidence=AK121956 (DDBJ%2C Best hit);ORF_evidence=Q0JQF7 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J033107M13;Oryzabase=3113;Expression=AK121956;TENOR=Os01t0165000-02;KEGG=Os01t0165000-02
Chr01	irgsp1_rep	five_prime_UTR	3356461	3356781	.	+	.	Parent=Os01t0165000-02
Chr01	irgsp1_rep	CDS	3356782	3356828	.	+	0	Parent=Os01t0165000-02
Chr01	irgsp1_rep	CDS	3357445	3358222	.	+	1	Parent=Os01t0165000-02
Chr01	irgsp1_rep	three_prime_UTR	3358223	3359348	.	+	.	Parent=Os01t0165000-02
Chr01	irgsp1_rep	three_prime_UTR	3359839	3361204	.	+	.	Parent=Os01t0165000-02
Chr01	irgsp1_rep	mRNA	3358534	3360674	.	-	.	ID=Os01t0165100-02;Name=Os01t0165100-02;Locus_id=Os01g0165100;Note=Conserved hypothetical protein.;Transcript_evidence=AK103011 (DDBJ%2C Best hit),AK059335 (DDBJ%2C Best hit);ORF_evidence=A2WL20 (UniProt);NIAS_FLcDNA=J033116J22,001-026-A11;Expression=AK103011;TENOR=Os01t0165100-02;KEGG=Os01t0165100-02
Chr01	irgsp1_rep	five_prime_UTR	3360642	3360674	.	-	.	Parent=Os01t0165100-02
Chr01	irgsp1_rep	CDS	3359779	3360641	.	-	0	Parent=Os01t0165100-02
Chr01	irgsp1_rep	CDS	3358687	3359332	.	-	1	Parent=Os01t0165100-02
Chr01	irgsp1_rep	three_prime_UTR	3358534	3358686	.	-	.	Parent=Os01t0165100-02
Chr01	irgsp1_rep	mRNA	3362062	3367658	.	-	.	ID=Os01t0165200-01;Name=Os01t0165200-01;Locus_id=Os01g0165200;RAP-DB Gene Symbol Synonym(s)=OsKEAP1;RAP-DB Gene Name Synonym(s)=Kelch-like ECH-associated protein 1;Note=KEAP1 ortholog%2C Regulation of the antioxidant response%2C Response to abiotic stresses%2C Plant growth and development;Transcript_evidence=AK066661;ORF_evidence=Q5VQH0;GO=Molecular Function: protein binding (GO:0005515);InterPro=Kelch-type beta propeller (IPR015915),Development/cell death domain (IPR013989),Kelch repeat type 1 (IPR006652);NIAS_FLcDNA=J013070N02;Manual Curation=November 2%2C 2020;Literature_PMID=33121183;Expression=AK066661;TENOR=Os01t0165200-01;KEGG=Os01t0165200-01;Subcellular location=cytoplasm (GO:0005737),nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	3367501	3367658	.	-	.	Parent=Os01t0165200-01
Chr01	irgsp1_rep	five_prime_UTR	3366298	3366298	.	-	.	Parent=Os01t0165200-01
Chr01	irgsp1_rep	CDS	3366171	3366297	.	-	0	Parent=Os01t0165200-01
Chr01	irgsp1_rep	CDS	3365805	3366007	.	-	2	Parent=Os01t0165200-01
Chr01	irgsp1_rep	CDS	3365011	3365727	.	-	0	Parent=Os01t0165200-01
Chr01	irgsp1_rep	CDS	3364837	3364893	.	-	0	Parent=Os01t0165200-01
Chr01	irgsp1_rep	CDS	3364253	3364595	.	-	0	Parent=Os01t0165200-01
Chr01	irgsp1_rep	CDS	3363976	3364175	.	-	2	Parent=Os01t0165200-01
Chr01	irgsp1_rep	CDS	3363230	3363306	.	-	0	Parent=Os01t0165200-01
Chr01	irgsp1_rep	CDS	3363038	3363139	.	-	1	Parent=Os01t0165200-01
Chr01	irgsp1_rep	CDS	3362660	3362846	.	-	1	Parent=Os01t0165200-01
Chr01	irgsp1_rep	CDS	3362460	3362549	.	-	0	Parent=Os01t0165200-01
Chr01	irgsp1_rep	three_prime_UTR	3362062	3362459	.	-	.	Parent=Os01t0165200-01
Chr01	irgsp1_rep	mRNA	3362001	3364942	.	-	.	ID=Os01t0165200-02;Name=Os01t0165200-02;Locus_id=Os01g0165200;Note=Similar to KEAP1.;Transcript_evidence=AK102967 (DDBJ%2C Best hit);ORF_evidence=Q7XB90 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Kelch repeat type 1 (IPR006652),Kelch-type beta propeller (IPR015915);NIAS_FLcDNA=J033115J12;Expression=AK102967;TENOR=Os01t0165200-02;KEGG=Os01t0165200-02
Chr01	irgsp1_rep	five_prime_UTR	3364894	3364942	.	-	.	Parent=Os01t0165200-02
Chr01	irgsp1_rep	CDS	3364837	3364893	.	-	0	Parent=Os01t0165200-02
Chr01	irgsp1_rep	CDS	3364253	3364595	.	-	0	Parent=Os01t0165200-02
Chr01	irgsp1_rep	CDS	3364086	3364175	.	-	2	Parent=Os01t0165200-02
Chr01	irgsp1_rep	CDS	3363284	3363306	.	-	2	Parent=Os01t0165200-02
Chr01	irgsp1_rep	three_prime_UTR	3363230	3363283	.	-	.	Parent=Os01t0165200-02
Chr01	irgsp1_rep	three_prime_UTR	3363038	3363139	.	-	.	Parent=Os01t0165200-02
Chr01	irgsp1_rep	three_prime_UTR	3362660	3362846	.	-	.	Parent=Os01t0165200-02
Chr01	irgsp1_rep	three_prime_UTR	3362001	3362549	.	-	.	Parent=Os01t0165200-02
Chr01	irgsp1_rep	mRNA	3376592	3377212	.	+	.	ID=Os01t0165600-00;Name=Os01t0165600-00;Locus_id=Os01g0165600;Note=Similar to H0323C08.17 protein.;Transcript_evidence=AK335607 (DDBJ);ORF_evidence=Q942P3 (UniProt);TENOR=Os01t0165600-00;KEGG=Os01t0165600-00
Chr01	irgsp1_rep	five_prime_UTR	3376592	3376592	.	+	.	Parent=Os01t0165600-00
Chr01	irgsp1_rep	CDS	3376593	3377105	.	+	0	Parent=Os01t0165600-00
Chr01	irgsp1_rep	three_prime_UTR	3377106	3377212	.	+	.	Parent=Os01t0165600-00
Chr01	irgsp1_rep	mRNA	3386766	3390803	.	-	.	ID=Os01t0165800-01;Name=Os01t0165800-01;Locus_id=Os01g0165800;Oryzabase Gene Symbol Synonym(s)=Os_F0651;Note=DNA-binding HORMA domain containing protein.;Transcript_evidence=AK119338 (DDBJ%2C Best hit);ORF_evidence=B8ADF4 (UniProt);GO=Biological Process: mitosis (GO:0007067);InterPro=DNA-binding HORMA (IPR003511),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=001-131-D04;Oryzabase=17467;TENOR=Os01t0165800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	3390793	3390803	.	-	.	Parent=Os01t0165800-01
Chr01	irgsp1_rep	CDS	3389962	3390792	.	-	0	Parent=Os01t0165800-01
Chr01	irgsp1_rep	CDS	3389740	3389863	.	-	0	Parent=Os01t0165800-01
Chr01	irgsp1_rep	CDS	3389591	3389659	.	-	2	Parent=Os01t0165800-01
Chr01	irgsp1_rep	CDS	3389382	3389471	.	-	2	Parent=Os01t0165800-01
Chr01	irgsp1_rep	CDS	3389179	3389290	.	-	2	Parent=Os01t0165800-01
Chr01	irgsp1_rep	CDS	3388320	3388365	.	-	1	Parent=Os01t0165800-01
Chr01	irgsp1_rep	three_prime_UTR	3388269	3388319	.	-	.	Parent=Os01t0165800-01
Chr01	irgsp1_rep	three_prime_UTR	3388123	3388184	.	-	.	Parent=Os01t0165800-01
Chr01	irgsp1_rep	three_prime_UTR	3387542	3388027	.	-	.	Parent=Os01t0165800-01
Chr01	irgsp1_rep	three_prime_UTR	3387283	3387470	.	-	.	Parent=Os01t0165800-01
Chr01	irgsp1_rep	three_prime_UTR	3386766	3387174	.	-	.	Parent=Os01t0165800-01
Chr01	irgsp1_rep	mRNA	3397441	3400487	.	+	.	ID=Os01t0166100-01;Name=Os01t0166100-01;Locus_id=Os01g0166100;Note=Similar to Ca(2+)-dependent nuclease.;Transcript_evidence=AK103697 (DDBJ%2C Best hit);ORF_evidence=NP_001147648.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: nuclease activity (GO:0004518),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Thermonuclease active site (IPR002071),Staphylococcal nuclease (SNase-like) (IPR006021),Staphylococcal nuclease (SNase-like)%2C OB-fold (IPR016071);NIAS_FLcDNA=J033136K04;Expression=AK103697;TENOR=Os01t0166100-01;KEGG=Os01t0166100-01
Chr01	irgsp1_rep	five_prime_UTR	3397441	3397507	.	+	.	Parent=Os01t0166100-01
Chr01	irgsp1_rep	CDS	3397508	3397636	.	+	0	Parent=Os01t0166100-01
Chr01	irgsp1_rep	CDS	3397752	3397807	.	+	0	Parent=Os01t0166100-01
Chr01	irgsp1_rep	CDS	3398451	3398565	.	+	1	Parent=Os01t0166100-01
Chr01	irgsp1_rep	CDS	3398671	3398787	.	+	0	Parent=Os01t0166100-01
Chr01	irgsp1_rep	CDS	3398908	3399095	.	+	0	Parent=Os01t0166100-01
Chr01	irgsp1_rep	CDS	3399198	3399257	.	+	1	Parent=Os01t0166100-01
Chr01	irgsp1_rep	CDS	3399365	3399524	.	+	1	Parent=Os01t0166100-01
Chr01	irgsp1_rep	CDS	3399903	3399971	.	+	0	Parent=Os01t0166100-01
Chr01	irgsp1_rep	CDS	3400085	3400186	.	+	0	Parent=Os01t0166100-01
Chr01	irgsp1_rep	three_prime_UTR	3400187	3400487	.	+	.	Parent=Os01t0166100-01
Chr01	irgsp1_rep	mRNA	3401204	3402049	.	-	.	ID=Os01t0166200-01;Name=Os01t0166200-01;Locus_id=Os01g0166200;Note=Hypothetical protein.;Transcript_evidence=AK111019 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-174-G08;TENOR=Os01t0166200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	3401675	3402049	.	-	.	Parent=Os01t0166200-01
Chr01	irgsp1_rep	CDS	3401204	3401674	.	-	0	Parent=Os01t0166200-01
Chr01	irgsp1_rep	mRNA	3402088	3403488	.	+	.	ID=Os01t0166300-00;Name=Os01t0166300-00;Locus_id=Os01g0166300;Note=Similar to nuclease.;Transcript_evidence=FP099530 (DDBJ);ORF_evidence=NP_001147648.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Staphylococcal nuclease (SNase-like) (IPR006021),Staphylococcal nuclease (SNase-like)%2C OB-fold (IPR016071);TENOR=Os01t0166300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	3402088	3402141	.	+	0	Parent=Os01t0166300-00
Chr01	irgsp1_rep	CDS	3402230	3402417	.	+	0	Parent=Os01t0166300-00
Chr01	irgsp1_rep	CDS	3402502	3402561	.	+	1	Parent=Os01t0166300-00
Chr01	irgsp1_rep	CDS	3402648	3402807	.	+	1	Parent=Os01t0166300-00
Chr01	irgsp1_rep	CDS	3403155	3403223	.	+	0	Parent=Os01t0166300-00
Chr01	irgsp1_rep	CDS	3403351	3403488	.	+	0	Parent=Os01t0166300-00
Chr01	irgsp1_rep	mRNA	3405466	3408694	.	+	.	ID=Os01t0166400-01;Name=Os01t0166400-01;Locus_id=Os01g0166400;Note=Similar to phosphatidylinositolglycan-related.;Transcript_evidence=AK241417 (DDBJ%2C Best hit);ORF_evidence=NP_195278.2 (RefSeq);GO=Molecular Function: phosphatidylinositol N-acetylglucosaminyltransferase activity (GO:0017176);InterPro=GPI-GlcNAc transferase complex%2C PIG-H component%2C conserved domain (IPR019328);NIAS_FLcDNA=J065160K14;TENOR=Os01t0166400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	3405466	3405565	.	+	.	Parent=Os01t0166400-01
Chr01	irgsp1_rep	five_prime_UTR	3405756	3406447	.	+	.	Parent=Os01t0166400-01
Chr01	irgsp1_rep	five_prime_UTR	3406626	3406872	.	+	.	Parent=Os01t0166400-01
Chr01	irgsp1_rep	CDS	3406873	3407136	.	+	0	Parent=Os01t0166400-01
Chr01	irgsp1_rep	CDS	3407215	3407358	.	+	0	Parent=Os01t0166400-01
Chr01	irgsp1_rep	three_prime_UTR	3407359	3407822	.	+	.	Parent=Os01t0166400-01
Chr01	irgsp1_rep	three_prime_UTR	3407977	3408694	.	+	.	Parent=Os01t0166400-01
Chr01	irgsp1_rep	mRNA	3405466	3407642	.	+	.	ID=Os01t0166400-02;Name=Os01t0166400-02;Locus_id=Os01g0166400;Note=Hypothetical conserved gene.;Transcript_evidence=AK241638 (DDBJ%2C Best hit);ORF_evidence=B9ET13 (UniProt);GO=Molecular Function: phosphatidylinositol N-acetylglucosaminyltransferase activity (GO:0017176);InterPro=GPI-GlcNAc transferase complex%2C PIG-H component%2C conserved domain (IPR019328);NIAS_FLcDNA=J065188L13;TENOR=Os01t0166400-02;KEGG=Os01t0166400-02
Chr01	irgsp1_rep	five_prime_UTR	3405466	3405565	.	+	.	Parent=Os01t0166400-02
Chr01	irgsp1_rep	five_prime_UTR	3405813	3405895	.	+	.	Parent=Os01t0166400-02
Chr01	irgsp1_rep	CDS	3405896	3406069	.	+	0	Parent=Os01t0166400-02
Chr01	irgsp1_rep	CDS	3406363	3406447	.	+	0	Parent=Os01t0166400-02
Chr01	irgsp1_rep	CDS	3406626	3406680	.	+	2	Parent=Os01t0166400-02
Chr01	irgsp1_rep	CDS	3406998	3407136	.	+	1	Parent=Os01t0166400-02
Chr01	irgsp1_rep	CDS	3407215	3407358	.	+	0	Parent=Os01t0166400-02
Chr01	irgsp1_rep	three_prime_UTR	3407359	3407642	.	+	.	Parent=Os01t0166400-02
Chr01	irgsp1_rep	mRNA	3414866	3415943	.	-	.	ID=Os01t0166500-02;Name=Os01t0166500-02;Locus_id=Os01g0166500;Note=Conserved hypothetical protein.;Transcript_evidence=AK122083 (DDBJ%2C Best hit),AK101697 (DDBJ%2C Best hit);ORF_evidence=B9ET14 (UniProt);NIAS_FLcDNA=J033122A19,J033060C18;Expression=AK122083;TENOR=Os01t0166500-02;KEGG=Os01t0166500-02
Chr01	irgsp1_rep	five_prime_UTR	3415868	3415943	.	-	.	Parent=Os01t0166500-02
Chr01	irgsp1_rep	CDS	3415127	3415867	.	-	0	Parent=Os01t0166500-02
Chr01	irgsp1_rep	three_prime_UTR	3414866	3415126	.	-	.	Parent=Os01t0166500-02
Chr01	irgsp1_rep	mRNA	3422373	3425500	.	+	.	ID=Os01t0166700-01;Name=Os01t0166700-01;Locus_id=Os01g0166700;Note=Saposin family protein.;Transcript_evidence=AK067805 (DDBJ%2C Best hit);ORF_evidence=B6T780 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: sphingolipid metabolic process (GO:0006665),Cellular Component: lysosome (GO:0005764);InterPro=Saposin-like type B%2C 1 (IPR007856),Saposin-like type B%2C 2 (IPR008138),Saposin B (IPR008139),Saposin (IPR008373),Saposin-like (IPR011001);NIAS_FLcDNA=J013119N08;Expression=AK067805;TENOR=Os01t0166700-01;KEGG=Os01t0166700-01
Chr01	irgsp1_rep	five_prime_UTR	3422373	3422657	.	+	.	Parent=Os01t0166700-01
Chr01	irgsp1_rep	five_prime_UTR	3423347	3423351	.	+	.	Parent=Os01t0166700-01
Chr01	irgsp1_rep	CDS	3423352	3423439	.	+	0	Parent=Os01t0166700-01
Chr01	irgsp1_rep	CDS	3424057	3424241	.	+	2	Parent=Os01t0166700-01
Chr01	irgsp1_rep	CDS	3424333	3424530	.	+	0	Parent=Os01t0166700-01
Chr01	irgsp1_rep	CDS	3424617	3424676	.	+	0	Parent=Os01t0166700-01
Chr01	irgsp1_rep	CDS	3425022	3425171	.	+	0	Parent=Os01t0166700-01
Chr01	irgsp1_rep	three_prime_UTR	3425172	3425500	.	+	.	Parent=Os01t0166700-01
Chr01	irgsp1_rep	mRNA	3425794	3429573	.	-	.	ID=Os01t0166800-01;Name=Os01t0166800-01;Locus_id=Os01g0166800;Note=Similar to ETG1 (E2F TARGET GENE 1).;Transcript_evidence=AK073783 (DDBJ%2C Best hit),AK099378 (DDBJ%2C Best hit);ORF_evidence=NP_181587.2 (RefSeq);InterPro=Mini-Chromosome maintenance complex-binding protein (IPR019140);NIAS_FLcDNA=J033068H14,J033067O18;Expression=AK073783;TENOR=Os01t0166800-01;KEGG=Os01t0166800-01
Chr01	irgsp1_rep	five_prime_UTR	3429497	3429573	.	-	.	Parent=Os01t0166800-01
Chr01	irgsp1_rep	CDS	3429320	3429496	.	-	0	Parent=Os01t0166800-01
Chr01	irgsp1_rep	CDS	3428800	3428913	.	-	0	Parent=Os01t0166800-01
Chr01	irgsp1_rep	CDS	3428611	3428718	.	-	0	Parent=Os01t0166800-01
Chr01	irgsp1_rep	CDS	3428366	3428491	.	-	0	Parent=Os01t0166800-01
Chr01	irgsp1_rep	CDS	3428227	3428274	.	-	0	Parent=Os01t0166800-01
Chr01	irgsp1_rep	CDS	3427868	3427993	.	-	0	Parent=Os01t0166800-01
Chr01	irgsp1_rep	CDS	3427625	3427783	.	-	0	Parent=Os01t0166800-01
Chr01	irgsp1_rep	CDS	3427432	3427506	.	-	0	Parent=Os01t0166800-01
Chr01	irgsp1_rep	CDS	3427227	3427340	.	-	0	Parent=Os01t0166800-01
Chr01	irgsp1_rep	CDS	3426905	3427107	.	-	0	Parent=Os01t0166800-01
Chr01	irgsp1_rep	CDS	3426669	3426804	.	-	1	Parent=Os01t0166800-01
Chr01	irgsp1_rep	CDS	3426362	3426586	.	-	0	Parent=Os01t0166800-01
Chr01	irgsp1_rep	CDS	3426191	3426258	.	-	0	Parent=Os01t0166800-01
Chr01	irgsp1_rep	CDS	3425951	3426065	.	-	1	Parent=Os01t0166800-01
Chr01	irgsp1_rep	three_prime_UTR	3425794	3425950	.	-	.	Parent=Os01t0166800-01
Chr01	irgsp1_rep	mRNA	3431609	3433317	.	+	.	ID=Os01t0167100-01;Name=Os01t0167100-01;Locus_id=Os01g0167100;Note=Hypothetical protein.;Transcript_evidence=AK072599 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023127J21;TENOR=Os01t0167100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	3431609	3431633	.	+	.	Parent=Os01t0167100-01
Chr01	irgsp1_rep	CDS	3431634	3431867	.	+	0	Parent=Os01t0167100-01
Chr01	irgsp1_rep	three_prime_UTR	3431868	3432252	.	+	.	Parent=Os01t0167100-01
Chr01	irgsp1_rep	three_prime_UTR	3432630	3432818	.	+	.	Parent=Os01t0167100-01
Chr01	irgsp1_rep	three_prime_UTR	3432918	3433317	.	+	.	Parent=Os01t0167100-01
Chr01	irgsp1_rep	mRNA	3431611	3432469	.	+	.	ID=Os01t0167100-02;Name=Os01t0167100-02;Locus_id=Os01g0167100;Note=Hypothetical conserved gene.;Transcript_evidence=AK063153 (DDBJ%2C Best hit);ORF_evidence=Q9AS87 (UniProt);NIAS_FLcDNA=001-111-H09;Expression=AK063153;TENOR=Os01t0167100-02;KEGG=Os01t0167100-02
Chr01	irgsp1_rep	five_prime_UTR	3431611	3431612	.	+	.	Parent=Os01t0167100-02
Chr01	irgsp1_rep	CDS	3431613	3431867	.	+	0	Parent=Os01t0167100-02
Chr01	irgsp1_rep	three_prime_UTR	3431868	3432469	.	+	.	Parent=Os01t0167100-02
Chr01	irgsp1_rep	mRNA	3445220	3446488	.	+	.	ID=Os01t0167400-01;Name=Os01t0167400-01;Locus_id=Os01g0167400;Note=Similar to Protein synthesis inhibitor II (EC 3.2.2.22) (Ribosome-inactivating protein II) (rRNA N-glycosidase).;Transcript_evidence=AK120073 (DDBJ%2C Best hit);ORF_evidence=Q7GC66 (UniProt);GO=Biological Process: negative regulation of translation (GO:0017148),Molecular Function: rRNA N-glycosylase activity (GO:0030598);InterPro=Ribosome-inactivating protein (IPR001574),Ribosome-inactivating protein%2C subdomain 1 (IPR016138),Ribosome-inactivating protein subgroup (IPR017989);NIAS_FLcDNA=J013006P20;Expression=AK120073;TENOR=Os01t0167400-01;KEGG=Os01t0167400-01 (EC:3.2.2.22)
Chr01	irgsp1_rep	five_prime_UTR	3445220	3445443	.	+	.	Parent=Os01t0167400-01
Chr01	irgsp1_rep	CDS	3445444	3446256	.	+	0	Parent=Os01t0167400-01
Chr01	irgsp1_rep	three_prime_UTR	3446257	3446488	.	+	.	Parent=Os01t0167400-01
Chr01	irgsp1_rep	mRNA	3446940	3450180	.	-	.	ID=Os01t0167500-01;Name=Os01t0167500-01;Locus_id=Os01g0167500;Note=Protein of unknown function DUF250 domain containing protein.;Transcript_evidence=AK062253 (DDBJ%2C Best hit),AK119227 (DDBJ%2C Best hit);ORF_evidence=B4G114 (UniProt);InterPro=Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=001-047-G05,001-101-A03;Expression=AK062253;TENOR=Os01t0167500-01;KEGG=Os01t0167500-01
Chr01	irgsp1_rep	five_prime_UTR	3450020	3450180	.	-	.	Parent=Os01t0167500-01
Chr01	irgsp1_rep	five_prime_UTR	3449807	3449911	.	-	.	Parent=Os01t0167500-01
Chr01	irgsp1_rep	CDS	3449683	3449806	.	-	0	Parent=Os01t0167500-01
Chr01	irgsp1_rep	CDS	3448890	3449074	.	-	2	Parent=Os01t0167500-01
Chr01	irgsp1_rep	CDS	3448579	3448646	.	-	0	Parent=Os01t0167500-01
Chr01	irgsp1_rep	CDS	3448314	3448446	.	-	1	Parent=Os01t0167500-01
Chr01	irgsp1_rep	CDS	3447898	3448059	.	-	0	Parent=Os01t0167500-01
Chr01	irgsp1_rep	CDS	3447544	3447816	.	-	0	Parent=Os01t0167500-01
Chr01	irgsp1_rep	CDS	3447295	3447420	.	-	0	Parent=Os01t0167500-01
Chr01	irgsp1_rep	three_prime_UTR	3446940	3447294	.	-	.	Parent=Os01t0167500-01
Chr01	irgsp1_rep	mRNA	3454882	3456059	.	+	.	ID=Os01t0167600-00;Name=Os01t0167600-00;Locus_id=Os01g0167600;Note=Hypothetical conserved gene.;Transcript_evidence=EU970199 (DDBJ);ORF_evidence=Q5VQG2 (UniProt);TENOR=Os01t0167600-00;KEGG=Os01t0167600-00
Chr01	irgsp1_rep	CDS	3454882	3455574	.	+	0	Parent=Os01t0167600-00
Chr01	irgsp1_rep	CDS	3455688	3456059	.	+	0	Parent=Os01t0167600-00
Chr01	irgsp1_rep	mRNA	3456869	3464952	.	-	.	ID=Os01t0167700-01;Name=Os01t0167700-01;Locus_id=Os01g0167700;CGSNL Gene Symbol=HEIP1;CGSNL Gene Name=HEI10 INTERACTION PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsHEIP1;Oryzabase Gene Name Synonym(s)=HEI10 Interaction Protein 1;Note=Conserved hypothetical protein.;Transcript_evidence=AK069523 (DDBJ%2C Best hit);ORF_evidence=B9ET17 (UniProt);NIAS_FLcDNA=J023021D06;Oryzabase=22654;TENOR=Os01t0167700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	3464283	3464952	.	-	.	Parent=Os01t0167700-01
Chr01	irgsp1_rep	CDS	3464212	3464282	.	-	0	Parent=Os01t0167700-01
Chr01	irgsp1_rep	CDS	3463935	3464110	.	-	1	Parent=Os01t0167700-01
Chr01	irgsp1_rep	CDS	3463315	3463419	.	-	2	Parent=Os01t0167700-01
Chr01	irgsp1_rep	CDS	3463031	3463043	.	-	2	Parent=Os01t0167700-01
Chr01	irgsp1_rep	CDS	3462807	3462940	.	-	1	Parent=Os01t0167700-01
Chr01	irgsp1_rep	CDS	3462230	3462325	.	-	2	Parent=Os01t0167700-01
Chr01	irgsp1_rep	CDS	3461809	3461863	.	-	2	Parent=Os01t0167700-01
Chr01	irgsp1_rep	CDS	3461245	3461329	.	-	1	Parent=Os01t0167700-01
Chr01	irgsp1_rep	CDS	3460356	3460557	.	-	0	Parent=Os01t0167700-01
Chr01	irgsp1_rep	CDS	3460091	3460250	.	-	2	Parent=Os01t0167700-01
Chr01	irgsp1_rep	CDS	3459947	3459984	.	-	1	Parent=Os01t0167700-01
Chr01	irgsp1_rep	CDS	3459460	3459532	.	-	2	Parent=Os01t0167700-01
Chr01	irgsp1_rep	CDS	3459286	3459390	.	-	1	Parent=Os01t0167700-01
Chr01	irgsp1_rep	CDS	3459146	3459171	.	-	1	Parent=Os01t0167700-01
Chr01	irgsp1_rep	CDS	3457846	3459004	.	-	2	Parent=Os01t0167700-01
Chr01	irgsp1_rep	CDS	3457566	3457755	.	-	1	Parent=Os01t0167700-01
Chr01	irgsp1_rep	three_prime_UTR	3457414	3457565	.	-	.	Parent=Os01t0167700-01
Chr01	irgsp1_rep	three_prime_UTR	3456869	3457123	.	-	.	Parent=Os01t0167700-01
Chr01	irgsp1_rep	mRNA	3456869	3464965	.	-	.	ID=Os01t0167700-02;Name=Os01t0167700-02;Locus_id=Os01g0167700;RAP-DB Gene Symbol Synonym(s)=HEIP1;RAP-DB Gene Name Synonym(s)=HEI10 Interaction Protein 1;CGSNL Gene Symbol=HEIP1;CGSNL Gene Name=HEI10 INTERACTION PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsHEIP1;Oryzabase Gene Name Synonym(s)=HEI10 Interaction Protein 1;Note=Crossover protein%2C Regulation of crossover formation during meiosis;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;Manual Curation=January 7%2C 2019;Literature_PMID=30275327;Oryzabase=22654
Chr01	irgsp1_rep	five_prime_UTR	3464496	3464965	.	-	.	Parent=Os01t0167700-02
Chr01	irgsp1_rep	CDS	3464454	3464495	.	-	0	Parent=Os01t0167700-02
Chr01	irgsp1_rep	CDS	3464212	3464234	.	-	0	Parent=Os01t0167700-02
Chr01	irgsp1_rep	CDS	3463935	3464110	.	-	1	Parent=Os01t0167700-02
Chr01	irgsp1_rep	CDS	3463315	3463419	.	-	2	Parent=Os01t0167700-02
Chr01	irgsp1_rep	CDS	3463031	3463043	.	-	2	Parent=Os01t0167700-02
Chr01	irgsp1_rep	CDS	3462807	3462940	.	-	1	Parent=Os01t0167700-02
Chr01	irgsp1_rep	CDS	3462230	3462325	.	-	2	Parent=Os01t0167700-02
Chr01	irgsp1_rep	CDS	3461809	3461863	.	-	2	Parent=Os01t0167700-02
Chr01	irgsp1_rep	CDS	3461245	3461329	.	-	1	Parent=Os01t0167700-02
Chr01	irgsp1_rep	CDS	3460356	3460557	.	-	0	Parent=Os01t0167700-02
Chr01	irgsp1_rep	CDS	3460091	3460250	.	-	2	Parent=Os01t0167700-02
Chr01	irgsp1_rep	CDS	3459947	3459984	.	-	1	Parent=Os01t0167700-02
Chr01	irgsp1_rep	CDS	3459460	3459532	.	-	2	Parent=Os01t0167700-02
Chr01	irgsp1_rep	CDS	3459286	3459390	.	-	1	Parent=Os01t0167700-02
Chr01	irgsp1_rep	CDS	3459146	3459171	.	-	1	Parent=Os01t0167700-02
Chr01	irgsp1_rep	CDS	3457846	3459004	.	-	2	Parent=Os01t0167700-02
Chr01	irgsp1_rep	CDS	3457649	3457755	.	-	1	Parent=Os01t0167700-02
Chr01	irgsp1_rep	CDS	3457414	3457565	.	-	2	Parent=Os01t0167700-02
Chr01	irgsp1_rep	CDS	3457067	3457123	.	-	0	Parent=Os01t0167700-02
Chr01	irgsp1_rep	three_prime_UTR	3456869	3457066	.	-	.	Parent=Os01t0167700-02
Chr01	irgsp1_rep	mRNA	3465634	3467560	.	-	.	ID=Os01t0167750-00;Name=Os01t0167750-00;Locus_id=Os01g0167750;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=BT085700 (DDBJ);ORF_evidence=NP_001172197.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os01t0167750-00;KEGG=Os01t0167750-00
Chr01	irgsp1_rep	five_prime_UTR	3467521	3467560	.	-	.	Parent=Os01t0167750-00
Chr01	irgsp1_rep	CDS	3465634	3467520	.	-	0	Parent=Os01t0167750-00
Chr01	irgsp1_rep	mRNA	3467858	3472105	.	-	.	ID=Os01t0167800-01;Name=Os01t0167800-01;Locus_id=Os01g0167800;Note=Conserved hypothetical protein.;Transcript_evidence=AK101983 (DDBJ%2C Best hit);ORF_evidence=A2ZPP2 (UniProt);NIAS_FLcDNA=J033078H03;TENOR=Os01t0167800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	3472007	3472105	.	-	.	Parent=Os01t0167800-01
Chr01	irgsp1_rep	five_prime_UTR	3471468	3471469	.	-	.	Parent=Os01t0167800-01
Chr01	irgsp1_rep	CDS	3470772	3471467	.	-	0	Parent=Os01t0167800-01
Chr01	irgsp1_rep	three_prime_UTR	3469680	3470771	.	-	.	Parent=Os01t0167800-01
Chr01	irgsp1_rep	three_prime_UTR	3469258	3469555	.	-	.	Parent=Os01t0167800-01
Chr01	irgsp1_rep	three_prime_UTR	3468505	3468895	.	-	.	Parent=Os01t0167800-01
Chr01	irgsp1_rep	three_prime_UTR	3467858	3468351	.	-	.	Parent=Os01t0167800-01
Chr01	irgsp1_rep	mRNA	3473846	3477048	.	-	.	ID=Os01t0167900-01;Name=Os01t0167900-01;Locus_id=Os01g0167900;Note=KIP1-like domain containing protein.;Transcript_evidence=AK072705 (DDBJ%2C Best hit),AK060540 (DDBJ%2C Best hit);ORF_evidence=A2WL42 (UniProt);InterPro=KIP1-like (IPR011684);NIAS_FLcDNA=J023135A18,001-021-E04;TENOR=Os01t0167900-01
Chr01	irgsp1_rep	five_prime_UTR	3476765	3477048	.	-	.	Parent=Os01t0167900-01
Chr01	irgsp1_rep	five_prime_UTR	3475939	3475957	.	-	.	Parent=Os01t0167900-01
Chr01	irgsp1_rep	CDS	3475833	3475938	.	-	0	Parent=Os01t0167900-01
Chr01	irgsp1_rep	CDS	3474096	3475288	.	-	2	Parent=Os01t0167900-01
Chr01	irgsp1_rep	three_prime_UTR	3473846	3474095	.	-	.	Parent=Os01t0167900-01
Chr01	irgsp1_rep	mRNA	3478537	3478978	.	-	.	ID=Os01t0168000-01;Name=Os01t0168000-01;Locus_id=Os01g0168000;Note=Hypothetical protein.;Transcript_evidence=AK120808 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023014B13;Expression=AK120808;TENOR=Os01t0168000-01;KEGG=Os01t0168000-01
Chr01	irgsp1_rep	five_prime_UTR	3478884	3478978	.	-	.	Parent=Os01t0168000-01
Chr01	irgsp1_rep	CDS	3478671	3478883	.	-	0	Parent=Os01t0168000-01
Chr01	irgsp1_rep	three_prime_UTR	3478537	3478670	.	-	.	Parent=Os01t0168000-01
Chr01	irgsp1_rep	mRNA	3479423	3484579	.	-	.	ID=Os01t0168100-01;Name=Os01t0168100-01;Locus_id=Os01g0168100;Note=KIP1-like domain containing protein.;Transcript_evidence=AK121992 (DDBJ%2C Best hit);ORF_evidence=NP_001146907.1 (RefSeq);InterPro=KIP1-like (IPR011684);NIAS_FLcDNA=J033109K22;Expression=AK121992;TENOR=Os01t0168100-01;KEGG=Os01t0168100-01
Chr01	irgsp1_rep	five_prime_UTR	3484453	3484579	.	-	.	Parent=Os01t0168100-01
Chr01	irgsp1_rep	five_prime_UTR	3481610	3481645	.	-	.	Parent=Os01t0168100-01
Chr01	irgsp1_rep	CDS	3481507	3481609	.	-	0	Parent=Os01t0168100-01
Chr01	irgsp1_rep	CDS	3479660	3481338	.	-	2	Parent=Os01t0168100-01
Chr01	irgsp1_rep	three_prime_UTR	3479423	3479659	.	-	.	Parent=Os01t0168100-01
Chr01	irgsp1_rep	mRNA	3479396	3480825	.	-	.	ID=Os01t0168100-02;Name=Os01t0168100-02;Locus_id=Os01g0168100;Note=Similar to CENP-E like kinetochore protein.;Transcript_evidence=AK064373 (DDBJ%2C Best hit);ORF_evidence=A2WL43 (UniProt);InterPro=Prefoldin (IPR009053);NIAS_FLcDNA=002-108-D02;Expression=AK064373;TENOR=Os01t0168100-02;KEGG=Os01t0168100-02
Chr01	irgsp1_rep	five_prime_UTR	3480824	3480825	.	-	.	Parent=Os01t0168100-02
Chr01	irgsp1_rep	CDS	3479660	3480823	.	-	0	Parent=Os01t0168100-02
Chr01	irgsp1_rep	three_prime_UTR	3479396	3479659	.	-	.	Parent=Os01t0168100-02
Chr01	irgsp1_rep	mRNA	3489348	3491991	.	-	.	ID=Os01t0168200-01;Name=Os01t0168200-01;Locus_id=Os01g0168200;CGSNL Gene Symbol=TRXH7;CGSNL Gene Name=THIOREDOXIN H-TYPE 7;Oryzabase Gene Symbol Synonym(s)=OsTRXh7%2C OsTrx1%2C Trx1;Oryzabase Gene Name Synonym(s)=Thioredoxin H-type 7%2C H-type Thioredoxin 7%2C Thioredoxin 1;Note=Similar to Thioredoxin-like protein.;Transcript_evidence=AK103756 (DDBJ%2C Best hit);ORF_evidence=Q9SWG6 (UniProt);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Thioredoxin (IPR005746),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766),Thioredoxin%2C conserved site (IPR017937);NIAS_FLcDNA=J033143D23;Oryzabase=9910;Expression=AK103756;TENOR=Os01t0168200-01;KEGG=Os01t0168200-01
Chr01	irgsp1_rep	five_prime_UTR	3491878	3491991	.	-	.	Parent=Os01t0168200-01
Chr01	irgsp1_rep	five_prime_UTR	3491134	3491170	.	-	.	Parent=Os01t0168200-01
Chr01	irgsp1_rep	CDS	3491113	3491133	.	-	0	Parent=Os01t0168200-01
Chr01	irgsp1_rep	CDS	3490878	3490991	.	-	0	Parent=Os01t0168200-01
Chr01	irgsp1_rep	CDS	3489996	3490118	.	-	0	Parent=Os01t0168200-01
Chr01	irgsp1_rep	CDS	3489739	3489876	.	-	0	Parent=Os01t0168200-01
Chr01	irgsp1_rep	three_prime_UTR	3489348	3489738	.	-	.	Parent=Os01t0168200-01
Chr01	irgsp1_rep	mRNA	3493411	3496559	.	-	.	ID=Os01t0168300-01;Name=Os01t0168300-01;Locus_id=Os01g0168300;Note=Conserved hypothetical protein.;Transcript_evidence=AK063678 (DDBJ%2C Best hit);ORF_evidence=F2EKM9 (UniProt);NIAS_FLcDNA=001-119-E03;Expression=AK063678;TENOR=Os01t0168300-01;KEGG=Os01t0168300-01
Chr01	irgsp1_rep	five_prime_UTR	3496513	3496559	.	-	.	Parent=Os01t0168300-01
Chr01	irgsp1_rep	CDS	3495976	3496512	.	-	0	Parent=Os01t0168300-01
Chr01	irgsp1_rep	CDS	3494743	3495015	.	-	0	Parent=Os01t0168300-01
Chr01	irgsp1_rep	CDS	3493501	3493833	.	-	0	Parent=Os01t0168300-01
Chr01	irgsp1_rep	three_prime_UTR	3493411	3493500	.	-	.	Parent=Os01t0168300-01
Chr01	irgsp1_rep	mRNA	3495948	3496585	.	+	.	ID=Os01t0168350-00;Name=Os01t0168350-00;Locus_id=Os01g0168350;Note=Non-protein coding transcript.;Transcript_evidence=EU949302 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0168350-00
Chr01	irgsp1_rep	exon	3495948	3496585	.	+	.	Parent=Os01t0168350-00
Chr01	irgsp1_rep	mRNA	3501094	3504775	.	+	.	ID=Os01t0168400-01;Name=Os01t0168400-01;Locus_id=Os01g0168400;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK120658 (DDBJ%2C Best hit);ORF_evidence=NP_001149464.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J013158E21;Expression=AK120658;TENOR=Os01t0168400-01;KEGG=Os01t0168400-01
Chr01	irgsp1_rep	five_prime_UTR	3501094	3501384	.	+	.	Parent=Os01t0168400-01
Chr01	irgsp1_rep	CDS	3501385	3501880	.	+	0	Parent=Os01t0168400-01
Chr01	irgsp1_rep	CDS	3502078	3502154	.	+	2	Parent=Os01t0168400-01
Chr01	irgsp1_rep	CDS	3502851	3503019	.	+	0	Parent=Os01t0168400-01
Chr01	irgsp1_rep	CDS	3503385	3503473	.	+	2	Parent=Os01t0168400-01
Chr01	irgsp1_rep	CDS	3503601	3503765	.	+	0	Parent=Os01t0168400-01
Chr01	irgsp1_rep	CDS	3503841	3503918	.	+	0	Parent=Os01t0168400-01
Chr01	irgsp1_rep	CDS	3504087	3504190	.	+	0	Parent=Os01t0168400-01
Chr01	irgsp1_rep	CDS	3504317	3504422	.	+	1	Parent=Os01t0168400-01
Chr01	irgsp1_rep	three_prime_UTR	3504423	3504775	.	+	.	Parent=Os01t0168400-01
Chr01	irgsp1_rep	mRNA	3501187	3504618	.	-	.	ID=Os01t0168450-00;Name=Os01t0168450-00;Locus_id=Os01g0168450;Note=Hypothetical protein.;Transcript_evidence=tplb0030g10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0168450-00
Chr01	irgsp1_rep	five_prime_UTR	3504309	3504618	.	-	.	Parent=Os01t0168450-00
Chr01	irgsp1_rep	five_prime_UTR	3504069	3504183	.	-	.	Parent=Os01t0168450-00
Chr01	irgsp1_rep	five_prime_UTR	3503839	3503907	.	-	.	Parent=Os01t0168450-00
Chr01	irgsp1_rep	five_prime_UTR	3503598	3503763	.	-	.	Parent=Os01t0168450-00
Chr01	irgsp1_rep	five_prime_UTR	3503384	3503470	.	-	.	Parent=Os01t0168450-00
Chr01	irgsp1_rep	five_prime_UTR	3502849	3503018	.	-	.	Parent=Os01t0168450-00
Chr01	irgsp1_rep	five_prime_UTR	3502076	3502152	.	-	.	Parent=Os01t0168450-00
Chr01	irgsp1_rep	five_prime_UTR	3501571	3501878	.	-	.	Parent=Os01t0168450-00
Chr01	irgsp1_rep	CDS	3501187	3501570	.	-	0	Parent=Os01t0168450-00
Chr01	irgsp1_rep	mRNA	3505759	3510343	.	+	.	ID=Os01t0168500-01;Name=Os01t0168500-01;Locus_id=Os01g0168500;CGSNL Gene Symbol=ATG18B;CGSNL Gene Name=AUTOPHAGY ASSOCIATED GENE 18B;Oryzabase Gene Symbol Synonym(s)=OsATG18b%2C OsWD40-3;Oryzabase Gene Name Synonym(s)=autophagy 18b;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK072657 (DDBJ%2C Best hit);ORF_evidence=NP_191203.2 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40 repeat%2C subgroup (IPR019781);NIAS_FLcDNA=J023134M09;Oryzabase=9661;Expression=AK072657;TENOR=Os01t0168500-01;KEGG=Os01t0168500-01
Chr01	irgsp1_rep	five_prime_UTR	3505759	3505870	.	+	.	Parent=Os01t0168500-01
Chr01	irgsp1_rep	five_prime_UTR	3506668	3506717	.	+	.	Parent=Os01t0168500-01
Chr01	irgsp1_rep	CDS	3506718	3507479	.	+	0	Parent=Os01t0168500-01
Chr01	irgsp1_rep	CDS	3507639	3507897	.	+	0	Parent=Os01t0168500-01
Chr01	irgsp1_rep	CDS	3509427	3509550	.	+	2	Parent=Os01t0168500-01
Chr01	irgsp1_rep	CDS	3509922	3510030	.	+	1	Parent=Os01t0168500-01
Chr01	irgsp1_rep	three_prime_UTR	3510031	3510343	.	+	.	Parent=Os01t0168500-01
Chr01	irgsp1_rep	mRNA	3511944	3515900	.	+	.	ID=Os01t0168600-01;Name=Os01t0168600-01;Locus_id=Os01g0168600;Note=Similar to predicted protein.;Transcript_evidence=AK288853 (DDBJ%2C Best hit);ORF_evidence=Q9LMF6 (UniProt);InterPro=GDP-fucose protein O-fucosyltransferase (IPR019378);NIAS_FLcDNA=J090075M17;TENOR=Os01t0168600-01;KEGG=Os01t0168600-01
Chr01	irgsp1_rep	five_prime_UTR	3511944	3511992	.	+	.	Parent=Os01t0168600-01
Chr01	irgsp1_rep	CDS	3511993	3512233	.	+	0	Parent=Os01t0168600-01
Chr01	irgsp1_rep	CDS	3513131	3513198	.	+	2	Parent=Os01t0168600-01
Chr01	irgsp1_rep	CDS	3513285	3513373	.	+	0	Parent=Os01t0168600-01
Chr01	irgsp1_rep	CDS	3513607	3513769	.	+	1	Parent=Os01t0168600-01
Chr01	irgsp1_rep	CDS	3513846	3514163	.	+	0	Parent=Os01t0168600-01
Chr01	irgsp1_rep	three_prime_UTR	3514164	3514435	.	+	.	Parent=Os01t0168600-01
Chr01	irgsp1_rep	three_prime_UTR	3514518	3514675	.	+	.	Parent=Os01t0168600-01
Chr01	irgsp1_rep	three_prime_UTR	3515091	3515900	.	+	.	Parent=Os01t0168600-01
Chr01	irgsp1_rep	mRNA	3516766	3519077	.	-	.	ID=Os01t0168800-01;Name=Os01t0168800-01;Locus_id=Os01g0168800;Note=Alpha/beta hydrolase fold-1 domain containing protein.;Transcript_evidence=AK289212 (DDBJ%2C Best hit);ORF_evidence=NP_001152296.1 (RefSeq);InterPro=Alpha/beta hydrolase fold-1 (IPR000073);NIAS_FLcDNA=J100061B21;TENOR=Os01t0168800-01;KEGG=Os01t0168800-01
Chr01	irgsp1_rep	five_prime_UTR	3519016	3519077	.	-	.	Parent=Os01t0168800-01
Chr01	irgsp1_rep	CDS	3518308	3519015	.	-	0	Parent=Os01t0168800-01
Chr01	irgsp1_rep	CDS	3517411	3517506	.	-	0	Parent=Os01t0168800-01
Chr01	irgsp1_rep	CDS	3517243	3517310	.	-	0	Parent=Os01t0168800-01
Chr01	irgsp1_rep	CDS	3517006	3517144	.	-	1	Parent=Os01t0168800-01
Chr01	irgsp1_rep	three_prime_UTR	3516766	3517005	.	-	.	Parent=Os01t0168800-01
Chr01	irgsp1_rep	mRNA	3518372	3519175	.	+	.	ID=Os01t0168850-01;Name=Os01t0168850-01;Locus_id=Os01g0168850;Note=Hypothetical gene.;Transcript_evidence=AK287979 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J075081H18;TENOR=Os01t0168850-01;KEGG=Os01t0168850-01
Chr01	irgsp1_rep	five_prime_UTR	3518372	3518590	.	+	.	Parent=Os01t0168850-01
Chr01	irgsp1_rep	CDS	3518591	3519043	.	+	0	Parent=Os01t0168850-01
Chr01	irgsp1_rep	three_prime_UTR	3519044	3519175	.	+	.	Parent=Os01t0168850-01
Chr01	irgsp1_rep	mRNA	3520944	3521309	.	+	.	ID=Os01t0169000-00;Name=Os01t0169000-00;Locus_id=Os01g0169000;Note=Hypothetical protein.;Transcript_evidence=EU971393 (DDBJ);ORF_evidence=GeneMark;TENOR=Os01t0169000-00
Chr01	irgsp1_rep	CDS	3520944	3521225	.	+	0	Parent=Os01t0169000-00
Chr01	irgsp1_rep	three_prime_UTR	3521226	3521309	.	+	.	Parent=Os01t0169000-00
Chr01	irgsp1_rep	mRNA	3551051	3553146	.	-	.	ID=Os01t0169400-01;Name=Os01t0169400-01;Locus_id=Os01g0169400;CGSNL Gene Symbol=RA2;CGSNL Gene Name=RAMOSA 2;Oryzabase Gene Symbol Synonym(s)=ra2%2C Osra2%2C OsCrll4%2C CRL1L4%2C OsRA2;Oryzabase Gene Name Synonym(s)=ramosa2%2C ra2 ortholog%2C Crl1-like 4%2C OsRAMOSA2%2C OsRAMOSA 2;Note=Similar to LOB domain protein 25.;Transcript_evidence=AK105527 (DDBJ%2C Best hit);ORF_evidence=B2KKZ3 (UniProt);InterPro=Lateral organ boundaries%2C LOB (IPR004883);NIAS_FLcDNA=001-127-G05;Oryzabase=7457;Expression=AK105527;TENOR=Os01t0169400-01;KEGG=Os01t0169400-01
Chr01	irgsp1_rep	five_prime_UTR	3552990	3553146	.	-	.	Parent=Os01t0169400-01
Chr01	irgsp1_rep	five_prime_UTR	3552763	3552876	.	-	.	Parent=Os01t0169400-01
Chr01	irgsp1_rep	five_prime_UTR	3552185	3552208	.	-	.	Parent=Os01t0169400-01
Chr01	irgsp1_rep	CDS	3551429	3552184	.	-	0	Parent=Os01t0169400-01
Chr01	irgsp1_rep	three_prime_UTR	3551411	3551428	.	-	.	Parent=Os01t0169400-01
Chr01	irgsp1_rep	three_prime_UTR	3551051	3551305	.	-	.	Parent=Os01t0169400-01
Chr01	irgsp1_rep	mRNA	3559811	3574278	.	-	.	ID=Os01t0169500-01;Name=Os01t0169500-01;Locus_id=Os01g0169500;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=AK120051 (DDBJ%2C Best hit);ORF_evidence=B9ET29 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),Domain of unknown function DUF3730 (IPR022542);NIAS_FLcDNA=J013000C23;Expression=AK120051;TENOR=Os01t0169500-01;KEGG=Os01t0169500-01
Chr01	irgsp1_rep	five_prime_UTR	3574207	3574278	.	-	.	Parent=Os01t0169500-01
Chr01	irgsp1_rep	CDS	3573496	3574206	.	-	0	Parent=Os01t0169500-01
Chr01	irgsp1_rep	CDS	3573184	3573267	.	-	0	Parent=Os01t0169500-01
Chr01	irgsp1_rep	CDS	3572327	3572603	.	-	0	Parent=Os01t0169500-01
Chr01	irgsp1_rep	CDS	3571604	3571854	.	-	2	Parent=Os01t0169500-01
Chr01	irgsp1_rep	CDS	3570738	3570912	.	-	0	Parent=Os01t0169500-01
Chr01	irgsp1_rep	CDS	3570446	3570636	.	-	2	Parent=Os01t0169500-01
Chr01	irgsp1_rep	CDS	3569965	3570065	.	-	0	Parent=Os01t0169500-01
Chr01	irgsp1_rep	CDS	3569743	3569818	.	-	1	Parent=Os01t0169500-01
Chr01	irgsp1_rep	CDS	3568677	3568808	.	-	0	Parent=Os01t0169500-01
Chr01	irgsp1_rep	CDS	3568525	3568606	.	-	0	Parent=Os01t0169500-01
Chr01	irgsp1_rep	CDS	3568255	3568327	.	-	2	Parent=Os01t0169500-01
Chr01	irgsp1_rep	CDS	3567980	3568148	.	-	1	Parent=Os01t0169500-01
Chr01	irgsp1_rep	CDS	3567761	3567891	.	-	0	Parent=Os01t0169500-01
Chr01	irgsp1_rep	CDS	3567357	3567445	.	-	1	Parent=Os01t0169500-01
Chr01	irgsp1_rep	CDS	3567075	3567163	.	-	2	Parent=Os01t0169500-01
Chr01	irgsp1_rep	CDS	3566762	3566974	.	-	0	Parent=Os01t0169500-01
Chr01	irgsp1_rep	CDS	3566041	3566118	.	-	0	Parent=Os01t0169500-01
Chr01	irgsp1_rep	CDS	3565363	3565545	.	-	0	Parent=Os01t0169500-01
Chr01	irgsp1_rep	CDS	3563553	3564407	.	-	0	Parent=Os01t0169500-01
Chr01	irgsp1_rep	CDS	3563154	3563450	.	-	0	Parent=Os01t0169500-01
Chr01	irgsp1_rep	CDS	3561853	3562491	.	-	0	Parent=Os01t0169500-01
Chr01	irgsp1_rep	CDS	3561596	3561743	.	-	0	Parent=Os01t0169500-01
Chr01	irgsp1_rep	CDS	3560439	3560560	.	-	2	Parent=Os01t0169500-01
Chr01	irgsp1_rep	CDS	3559941	3560303	.	-	0	Parent=Os01t0169500-01
Chr01	irgsp1_rep	three_prime_UTR	3559811	3559940	.	-	.	Parent=Os01t0169500-01
Chr01	irgsp1_rep	mRNA	3559761	3568072	.	-	.	ID=Os01t0169500-02;Name=Os01t0169500-02;Locus_id=Os01g0169500;Note=Hypothetical conserved gene.;Transcript_evidence=AK121259 (DDBJ%2C Best hit);ORF_evidence=B9ET29 (UniProt);NIAS_FLcDNA=J023103K03;Expression=AK121259;TENOR=Os01t0169500-02;KEGG=Os01t0169500-02
Chr01	irgsp1_rep	CDS	3567980	3568072	.	-	0	Parent=Os01t0169500-02
Chr01	irgsp1_rep	CDS	3567761	3567891	.	-	0	Parent=Os01t0169500-02
Chr01	irgsp1_rep	CDS	3567357	3567445	.	-	1	Parent=Os01t0169500-02
Chr01	irgsp1_rep	CDS	3567075	3567163	.	-	2	Parent=Os01t0169500-02
Chr01	irgsp1_rep	CDS	3566762	3566974	.	-	0	Parent=Os01t0169500-02
Chr01	irgsp1_rep	CDS	3566041	3566118	.	-	0	Parent=Os01t0169500-02
Chr01	irgsp1_rep	CDS	3565363	3565545	.	-	0	Parent=Os01t0169500-02
Chr01	irgsp1_rep	CDS	3563553	3564407	.	-	0	Parent=Os01t0169500-02
Chr01	irgsp1_rep	CDS	3563154	3563450	.	-	0	Parent=Os01t0169500-02
Chr01	irgsp1_rep	CDS	3561853	3562491	.	-	0	Parent=Os01t0169500-02
Chr01	irgsp1_rep	CDS	3561596	3561743	.	-	0	Parent=Os01t0169500-02
Chr01	irgsp1_rep	CDS	3560439	3560560	.	-	2	Parent=Os01t0169500-02
Chr01	irgsp1_rep	CDS	3559941	3560303	.	-	0	Parent=Os01t0169500-02
Chr01	irgsp1_rep	three_prime_UTR	3559761	3559940	.	-	.	Parent=Os01t0169500-02
Chr01	irgsp1_rep	mRNA	3577473	3581859	.	-	.	ID=Os01t0169800-01;Name=Os01t0169800-01;Locus_id=Os01g0169800;RAP-DB Gene Symbol Synonym(s)=FIB%2C fib;RAP-DB Gene Name Synonym(s)=FISH BONE%2C fish bone;CGSNL Gene Symbol=FIB;CGSNL Gene Name=FISH BONE;Oryzabase Gene Symbol Synonym(s)=fib%2C OsTAR2%2C TAR2%2C TSG1%2C OsTSG1;Oryzabase Gene Name Synonym(s)=fish bone%2C Trp aminotransferase 2%2C Tillering and small grain 1;Note=Tryptophan aminotransferase%2C Indole-3-acetic acid (IAA) biosynthesis;Transcript_evidence=AB243735 (Taichung 65);ORF_evidence=Q5VQG8;GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: carbon-sulfur lyase activity (GO:0016846),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent transferase (IPR015424),EGF-like%2C alliinase (IPR006947),Allinase%2C C-terminal (IPR006948),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422);Manual Curation=January 20%2C 2015;Literature_PMID=24654985;Oryzabase=2132;TENOR=Os01t0169800-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	3581441	3581859	.	-	0	Parent=Os01t0169800-01
Chr01	irgsp1_rep	CDS	3580780	3581095	.	-	1	Parent=Os01t0169800-01
Chr01	irgsp1_rep	CDS	3578895	3579178	.	-	0	Parent=Os01t0169800-01
Chr01	irgsp1_rep	CDS	3578476	3578795	.	-	1	Parent=Os01t0169800-01
Chr01	irgsp1_rep	CDS	3577989	3578173	.	-	2	Parent=Os01t0169800-01
Chr01	irgsp1_rep	three_prime_UTR	3577473	3577988	.	-	.	Parent=Os01t0169800-01
Chr01	irgsp1_rep	mRNA	3591827	3596152	.	-	.	ID=Os01t0169900-01;Name=Os01t0169900-01;Locus_id=Os01g0169900;Oryzabase Gene Name Synonym(s)=Proline-rich family protein;Note=Protein of unknown function DUF1421 family protein.;Transcript_evidence=AK121293 (DDBJ%2C Best hit);ORF_evidence=B6SV28 (UniProt);InterPro=Protein of unknown function DUF1421 (IPR010820);NIAS_FLcDNA=J023110A06;Oryzabase=18467;Expression=AK121293;TENOR=Os01t0169900-01;KEGG=Os01t0169900-01
Chr01	irgsp1_rep	five_prime_UTR	3596009	3596152	.	-	.	Parent=Os01t0169900-01
Chr01	irgsp1_rep	CDS	3595688	3596008	.	-	0	Parent=Os01t0169900-01
Chr01	irgsp1_rep	CDS	3594522	3594800	.	-	0	Parent=Os01t0169900-01
Chr01	irgsp1_rep	CDS	3592171	3593313	.	-	0	Parent=Os01t0169900-01
Chr01	irgsp1_rep	three_prime_UTR	3591827	3592170	.	-	.	Parent=Os01t0169900-01
Chr01	irgsp1_rep	mRNA	3598451	3599668	.	-	.	ID=Os01t0170000-01;Name=Os01t0170000-01;Locus_id=Os01g0170000;Oryzabase Gene Symbol Synonym(s)=RS5%2C OsRS5;Oryzabase Gene Name Synonym(s)=raffinose synthase%2C RAFFINOSE SYNTHASE 5;Note=Raffinose synthase family protein.;Transcript_evidence=AK061224 (DDBJ%2C Best hit);ORF_evidence=Q5VQG4 (UniProt);InterPro=Raffinose synthase (IPR008811),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=006-210-H01;Oryzabase=15230;Expression=AK061224;TENOR=Os01t0170000-01;KEGG=Os01t0170000-01
Chr01	irgsp1_rep	CDS	3598652	3599668	.	-	0	Parent=Os01t0170000-01
Chr01	irgsp1_rep	three_prime_UTR	3598451	3598651	.	-	.	Parent=Os01t0170000-01
Chr01	irgsp1_rep	mRNA	3598662	3601908	.	+	.	ID=Os01t0170051-00;Name=Os01t0170051-00;Locus_id=Os01g0170051;Note=Hypothetical protein.;Transcript_evidence=tplb0031h14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0170051-00
Chr01	irgsp1_rep	five_prime_UTR	3598662	3599254	.	+	.	Parent=Os01t0170051-00
Chr01	irgsp1_rep	CDS	3599255	3599761	.	+	0	Parent=Os01t0170051-00
Chr01	irgsp1_rep	CDS	3600619	3601482	.	+	0	Parent=Os01t0170051-00
Chr01	irgsp1_rep	three_prime_UTR	3601483	3601908	.	+	.	Parent=Os01t0170051-00
Chr01	irgsp1_rep	mRNA	3611353	3615657	.	+	.	ID=Os01t0170100-01;Name=Os01t0170100-01;Locus_id=Os01g0170100;Note=D111/G-patch domain containing protein.;Transcript_evidence=AK242074 (DDBJ%2C Best hit);ORF_evidence=Q5VQM8 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676);InterPro=D111/G-patch (IPR000467);NIAS_FLcDNA=J075136G06;TENOR=Os01t0170100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	3611353	3611354	.	+	.	Parent=Os01t0170100-01
Chr01	irgsp1_rep	CDS	3611355	3611385	.	+	0	Parent=Os01t0170100-01
Chr01	irgsp1_rep	CDS	3611537	3611791	.	+	2	Parent=Os01t0170100-01
Chr01	irgsp1_rep	CDS	3612060	3612265	.	+	2	Parent=Os01t0170100-01
Chr01	irgsp1_rep	CDS	3612469	3612696	.	+	0	Parent=Os01t0170100-01
Chr01	irgsp1_rep	CDS	3613161	3613259	.	+	0	Parent=Os01t0170100-01
Chr01	irgsp1_rep	three_prime_UTR	3613260	3613293	.	+	.	Parent=Os01t0170100-01
Chr01	irgsp1_rep	three_prime_UTR	3613535	3613637	.	+	.	Parent=Os01t0170100-01
Chr01	irgsp1_rep	three_prime_UTR	3615469	3615657	.	+	.	Parent=Os01t0170100-01
Chr01	irgsp1_rep	mRNA	3621211	3625338	.	+	.	ID=Os01t0170300-01;Name=Os01t0170300-01;Locus_id=Os01g0170300;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK241418 (DDBJ%2C Best hit);ORF_evidence=NP_001042139.2 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J065161B03;TENOR=Os01t0170300-01;KEGG=Os01t0170300-01
Chr01	irgsp1_rep	five_prime_UTR	3621211	3621522	.	+	.	Parent=Os01t0170300-01
Chr01	irgsp1_rep	CDS	3621523	3624403	.	+	0	Parent=Os01t0170300-01
Chr01	irgsp1_rep	CDS	3624524	3624996	.	+	2	Parent=Os01t0170300-01
Chr01	irgsp1_rep	three_prime_UTR	3624997	3625338	.	+	.	Parent=Os01t0170300-01
Chr01	irgsp1_rep	mRNA	3633290	3639159	.	-	.	ID=Os01t0170500-01;Name=Os01t0170500-01;Locus_id=Os01g0170500;Note=Protein of unknown function DUF239%2C plant domain containing protein.;Transcript_evidence=AK106837 (DDBJ%2C Best hit);ORF_evidence=B6SXW9 (UniProt);InterPro=Glucoamylase%2C putatuve (IPR004314);NIAS_FLcDNA=002-116-G08;Expression=AK106837;TENOR=Os01t0170500-01;KEGG=Os01t0170500-01
Chr01	irgsp1_rep	five_prime_UTR	3639023	3639159	.	-	.	Parent=Os01t0170500-01
Chr01	irgsp1_rep	CDS	3638807	3639022	.	-	0	Parent=Os01t0170500-01
Chr01	irgsp1_rep	CDS	3638610	3638696	.	-	0	Parent=Os01t0170500-01
Chr01	irgsp1_rep	CDS	3638252	3638488	.	-	0	Parent=Os01t0170500-01
Chr01	irgsp1_rep	CDS	3637434	3637598	.	-	0	Parent=Os01t0170500-01
Chr01	irgsp1_rep	CDS	3635278	3635331	.	-	0	Parent=Os01t0170500-01
Chr01	irgsp1_rep	CDS	3634563	3634709	.	-	0	Parent=Os01t0170500-01
Chr01	irgsp1_rep	CDS	3633812	3634189	.	-	0	Parent=Os01t0170500-01
Chr01	irgsp1_rep	three_prime_UTR	3633290	3633811	.	-	.	Parent=Os01t0170500-01
Chr01	irgsp1_rep	mRNA	3645508	3648396	.	+	.	ID=Os01t0170600-01;Name=Os01t0170600-01;Locus_id=Os01g0170600;Note=Hypothetical conserved gene.;Transcript_evidence=AK073628 (DDBJ%2C Best hit);ORF_evidence=B9ET34 (UniProt);NIAS_FLcDNA=J033051F19;Expression=AK073628;TENOR=Os01t0170600-01;KEGG=Os01t0170600-01
Chr01	irgsp1_rep	five_prime_UTR	3645508	3645586	.	+	.	Parent=Os01t0170600-01
Chr01	irgsp1_rep	CDS	3645587	3645917	.	+	0	Parent=Os01t0170600-01
Chr01	irgsp1_rep	CDS	3646150	3646233	.	+	2	Parent=Os01t0170600-01
Chr01	irgsp1_rep	CDS	3646584	3646798	.	+	2	Parent=Os01t0170600-01
Chr01	irgsp1_rep	CDS	3646975	3647022	.	+	0	Parent=Os01t0170600-01
Chr01	irgsp1_rep	CDS	3647958	3648098	.	+	0	Parent=Os01t0170600-01
Chr01	irgsp1_rep	three_prime_UTR	3648099	3648396	.	+	.	Parent=Os01t0170600-01
Chr01	irgsp1_rep	mRNA	3645512	3650691	.	+	.	ID=Os01t0170600-02;Name=Os01t0170600-02;Locus_id=Os01g0170600;Note=UspA domain containing protein.;Transcript_evidence=AK067202 (DDBJ%2C Best hit);ORF_evidence=D2JYS0 (UniProt);GO=Biological Process: response to stress (GO:0006950);InterPro=Universal stress protein A (IPR006015),UspA (IPR006016),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J013095D17;Expression=AK067202;TENOR=Os01t0170600-02;KEGG=Os01t0170600-02
Chr01	irgsp1_rep	five_prime_UTR	3645512	3645917	.	+	.	Parent=Os01t0170600-02
Chr01	irgsp1_rep	five_prime_UTR	3646150	3646233	.	+	.	Parent=Os01t0170600-02
Chr01	irgsp1_rep	five_prime_UTR	3646584	3646798	.	+	.	Parent=Os01t0170600-02
Chr01	irgsp1_rep	five_prime_UTR	3646975	3647022	.	+	.	Parent=Os01t0170600-02
Chr01	irgsp1_rep	five_prime_UTR	3647958	3649086	.	+	.	Parent=Os01t0170600-02
Chr01	irgsp1_rep	five_prime_UTR	3649166	3649273	.	+	.	Parent=Os01t0170600-02
Chr01	irgsp1_rep	CDS	3649274	3649448	.	+	0	Parent=Os01t0170600-02
Chr01	irgsp1_rep	CDS	3649619	3649728	.	+	2	Parent=Os01t0170600-02
Chr01	irgsp1_rep	CDS	3649841	3649959	.	+	0	Parent=Os01t0170600-02
Chr01	irgsp1_rep	CDS	3650284	3650362	.	+	1	Parent=Os01t0170600-02
Chr01	irgsp1_rep	three_prime_UTR	3650363	3650691	.	+	.	Parent=Os01t0170600-02
Chr01	irgsp1_rep	mRNA	3652273	3656479	.	+	.	ID=Os01t0170700-01;Name=Os01t0170700-01;Locus_id=Os01g0170700;Note=Thiol-activated cytolysin family protein.;Transcript_evidence=AK101269 (DDBJ%2C Best hit);ORF_evidence=A2ZPR3 (UniProt);NIAS_FLcDNA=J033032N01;Expression=AK101269;TENOR=Os01t0170700-01;KEGG=Os01t0170700-01
Chr01	irgsp1_rep	five_prime_UTR	3652273	3652629	.	+	.	Parent=Os01t0170700-01
Chr01	irgsp1_rep	five_prime_UTR	3652729	3652812	.	+	.	Parent=Os01t0170700-01
Chr01	irgsp1_rep	CDS	3652813	3653094	.	+	0	Parent=Os01t0170700-01
Chr01	irgsp1_rep	CDS	3653692	3653844	.	+	0	Parent=Os01t0170700-01
Chr01	irgsp1_rep	CDS	3654810	3654924	.	+	0	Parent=Os01t0170700-01
Chr01	irgsp1_rep	CDS	3655028	3655689	.	+	2	Parent=Os01t0170700-01
Chr01	irgsp1_rep	CDS	3655813	3655815	.	+	0	Parent=Os01t0170700-01
Chr01	irgsp1_rep	three_prime_UTR	3655816	3656479	.	+	.	Parent=Os01t0170700-01
Chr01	irgsp1_rep	mRNA	3661688	3664199	.	+	.	ID=Os01t0170800-01;Name=Os01t0170800-01;Locus_id=Os01g0170800;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK101200 (DDBJ%2C Best hit);ORF_evidence=A2WL64 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033030L24;TENOR=Os01t0170800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	3661688	3662851	.	+	0	Parent=Os01t0170800-01
Chr01	irgsp1_rep	three_prime_UTR	3662852	3662976	.	+	.	Parent=Os01t0170800-01
Chr01	irgsp1_rep	three_prime_UTR	3663504	3663757	.	+	.	Parent=Os01t0170800-01
Chr01	irgsp1_rep	three_prime_UTR	3663950	3664199	.	+	.	Parent=Os01t0170800-01
Chr01	irgsp1_rep	mRNA	3665042	3666044	.	-	.	ID=Os01t0170900-01;Name=Os01t0170900-01;Locus_id=Os01g0170900;Oryzabase Gene Symbol Synonym(s)=OsCLE101%2C CLE101;Oryzabase Gene Name Synonym(s)=CLV3/ESR-related 101%2C CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 101;Note=Conserved hypothetical protein.;Transcript_evidence=AK111084 (DDBJ%2C Best hit);ORF_evidence=A2WL65 (UniProt);NIAS_FLcDNA=002-175-F07;Oryzabase=14219;Expression=AK111084;TENOR=Os01t0170900-01;KEGG=Os01t0170900-01
Chr01	irgsp1_rep	five_prime_UTR	3665688	3666044	.	-	.	Parent=Os01t0170900-01
Chr01	irgsp1_rep	CDS	3665349	3665687	.	-	0	Parent=Os01t0170900-01
Chr01	irgsp1_rep	three_prime_UTR	3665042	3665348	.	-	.	Parent=Os01t0170900-01
Chr01	irgsp1_rep	mRNA	3667476	3673008	.	-	.	ID=Os01t0171000-01;Name=Os01t0171000-01;Locus_id=Os01g0171000;Oryzabase Gene Symbol Synonym(s)=OsSERL5%2C OsBAK1-4%2C SERK1;Oryzabase Gene Name Synonym(s)=BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase%2C SERK-like gene 5%2C bri1-associated receptor kinase 1 (BAK1) homologue 4;Note=BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor (EC 2.7.1.37) (BRI1-associated receptor kinase 1) (Somatic embryogenesis receptor-like kinase 3).;Transcript_evidence=AK100017 (DDBJ%2C Best hit);ORF_evidence=Q75UP2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013144J12;Oryzabase=12405;Expression=AK100017;TENOR=Os01t0171000-01;KEGG=Os01t0171000-01 (EC:2.7.1.37)
Chr01	irgsp1_rep	five_prime_UTR	3672752	3673008	.	-	.	Parent=Os01t0171000-01
Chr01	irgsp1_rep	CDS	3672649	3672751	.	-	0	Parent=Os01t0171000-01
Chr01	irgsp1_rep	CDS	3672170	3672302	.	-	2	Parent=Os01t0171000-01
Chr01	irgsp1_rep	CDS	3672003	3672074	.	-	1	Parent=Os01t0171000-01
Chr01	irgsp1_rep	CDS	3671766	3671909	.	-	1	Parent=Os01t0171000-01
Chr01	irgsp1_rep	CDS	3671605	3671676	.	-	1	Parent=Os01t0171000-01
Chr01	irgsp1_rep	CDS	3671430	3671489	.	-	1	Parent=Os01t0171000-01
Chr01	irgsp1_rep	CDS	3671211	3671308	.	-	1	Parent=Os01t0171000-01
Chr01	irgsp1_rep	CDS	3670982	3671131	.	-	2	Parent=Os01t0171000-01
Chr01	irgsp1_rep	CDS	3669571	3669912	.	-	2	Parent=Os01t0171000-01
Chr01	irgsp1_rep	CDS	3668670	3669061	.	-	2	Parent=Os01t0171000-01
Chr01	irgsp1_rep	CDS	3667752	3668072	.	-	0	Parent=Os01t0171000-01
Chr01	irgsp1_rep	three_prime_UTR	3667476	3667751	.	-	.	Parent=Os01t0171000-01
Chr01	irgsp1_rep	mRNA	3667525	3672784	.	-	.	ID=Os01t0171000-02;Name=Os01t0171000-02;Locus_id=Os01g0171000;Oryzabase Gene Symbol Synonym(s)=OsSERL5%2C OsBAK1-4%2C SERK1;Oryzabase Gene Name Synonym(s)=BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase%2C SERK-like gene 5%2C bri1-associated receptor kinase 1 (BAK1) homologue 4;Note=Similar to Leucine-rich repeat receptor-like kinase.;Transcript_evidence=AK060282 (DDBJ%2C Best hit);ORF_evidence=Q75UP2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=001-006-B07;Oryzabase=12405;TENOR=Os01t0171000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	3672752	3672784	.	-	.	Parent=Os01t0171000-02
Chr01	irgsp1_rep	CDS	3672649	3672751	.	-	0	Parent=Os01t0171000-02
Chr01	irgsp1_rep	CDS	3672170	3672302	.	-	2	Parent=Os01t0171000-02
Chr01	irgsp1_rep	CDS	3672003	3672074	.	-	1	Parent=Os01t0171000-02
Chr01	irgsp1_rep	CDS	3671766	3671909	.	-	1	Parent=Os01t0171000-02
Chr01	irgsp1_rep	CDS	3671605	3671676	.	-	1	Parent=Os01t0171000-02
Chr01	irgsp1_rep	CDS	3671430	3671489	.	-	1	Parent=Os01t0171000-02
Chr01	irgsp1_rep	CDS	3671211	3671308	.	-	1	Parent=Os01t0171000-02
Chr01	irgsp1_rep	CDS	3670982	3671131	.	-	2	Parent=Os01t0171000-02
Chr01	irgsp1_rep	CDS	3669571	3669912	.	-	2	Parent=Os01t0171000-02
Chr01	irgsp1_rep	CDS	3669020	3669061	.	-	2	Parent=Os01t0171000-02
Chr01	irgsp1_rep	CDS	3668735	3668775	.	-	2	Parent=Os01t0171000-02
Chr01	irgsp1_rep	three_prime_UTR	3668670	3668734	.	-	.	Parent=Os01t0171000-02
Chr01	irgsp1_rep	three_prime_UTR	3667525	3668072	.	-	.	Parent=Os01t0171000-02
Chr01	irgsp1_rep	mRNA	3678431	3680909	.	-	.	ID=Os01t0171100-00;Name=Os01t0171100-00;Locus_id=Os01g0171100;Note=Ankyrin repeat domain containing protein.;Transcript_evidence=AK367141 (DDBJ);ORF_evidence=B8ADH1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);TENOR=Os01t0171100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	3680741	3680909	.	-	0	Parent=Os01t0171100-00
Chr01	irgsp1_rep	CDS	3680489	3680662	.	-	2	Parent=Os01t0171100-00
Chr01	irgsp1_rep	CDS	3680246	3680380	.	-	2	Parent=Os01t0171100-00
Chr01	irgsp1_rep	CDS	3679987	3680126	.	-	2	Parent=Os01t0171100-00
Chr01	irgsp1_rep	CDS	3679702	3679788	.	-	0	Parent=Os01t0171100-00
Chr01	irgsp1_rep	CDS	3679392	3679523	.	-	0	Parent=Os01t0171100-00
Chr01	irgsp1_rep	CDS	3679092	3679244	.	-	0	Parent=Os01t0171100-00
Chr01	irgsp1_rep	CDS	3678798	3678937	.	-	0	Parent=Os01t0171100-00
Chr01	irgsp1_rep	CDS	3678533	3678563	.	-	1	Parent=Os01t0171100-00
Chr01	irgsp1_rep	three_prime_UTR	3678431	3678532	.	-	.	Parent=Os01t0171100-00
Chr01	irgsp1_rep	mRNA	3681798	3687409	.	-	.	ID=Os01t0171200-01;Name=Os01t0171200-01;Locus_id=Os01g0171200;Note=Conserved hypothetical protein.;Transcript_evidence=AK109475 (DDBJ%2C Best hit);ORF_evidence=B8ADH1 (UniProt);NIAS_FLcDNA=001-131-D02;TENOR=Os01t0171200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	3687389	3687409	.	-	.	Parent=Os01t0171200-01
Chr01	irgsp1_rep	CDS	3687107	3687388	.	-	0	Parent=Os01t0171200-01
Chr01	irgsp1_rep	CDS	3685443	3685730	.	-	0	Parent=Os01t0171200-01
Chr01	irgsp1_rep	CDS	3685212	3685370	.	-	0	Parent=Os01t0171200-01
Chr01	irgsp1_rep	CDS	3684988	3685110	.	-	0	Parent=Os01t0171200-01
Chr01	irgsp1_rep	CDS	3684451	3684520	.	-	0	Parent=Os01t0171200-01
Chr01	irgsp1_rep	CDS	3684269	3684381	.	-	2	Parent=Os01t0171200-01
Chr01	irgsp1_rep	three_prime_UTR	3683944	3684268	.	-	.	Parent=Os01t0171200-01
Chr01	irgsp1_rep	three_prime_UTR	3683770	3683866	.	-	.	Parent=Os01t0171200-01
Chr01	irgsp1_rep	three_prime_UTR	3683434	3683523	.	-	.	Parent=Os01t0171200-01
Chr01	irgsp1_rep	three_prime_UTR	3683226	3683341	.	-	.	Parent=Os01t0171200-01
Chr01	irgsp1_rep	three_prime_UTR	3682708	3683148	.	-	.	Parent=Os01t0171200-01
Chr01	irgsp1_rep	three_prime_UTR	3681798	3682608	.	-	.	Parent=Os01t0171200-01
Chr01	irgsp1_rep	mRNA	3682946	3687407	.	-	.	ID=Os01t0171200-02;Name=Os01t0171200-02;Locus_id=Os01g0171200;Note=Conserved hypothetical protein.;Transcript_evidence=AK107515 (DDBJ%2C Best hit);ORF_evidence=B9ET36 (UniProt);NIAS_FLcDNA=002-129-F03;Expression=AK107515;TENOR=Os01t0171200-02;KEGG=Os01t0171200-02
Chr01	irgsp1_rep	five_prime_UTR	3687389	3687407	.	-	.	Parent=Os01t0171200-02
Chr01	irgsp1_rep	CDS	3687107	3687388	.	-	0	Parent=Os01t0171200-02
Chr01	irgsp1_rep	CDS	3685443	3685730	.	-	0	Parent=Os01t0171200-02
Chr01	irgsp1_rep	CDS	3685212	3685370	.	-	0	Parent=Os01t0171200-02
Chr01	irgsp1_rep	CDS	3684988	3685110	.	-	0	Parent=Os01t0171200-02
Chr01	irgsp1_rep	CDS	3684451	3684520	.	-	0	Parent=Os01t0171200-02
Chr01	irgsp1_rep	CDS	3684310	3684381	.	-	2	Parent=Os01t0171200-02
Chr01	irgsp1_rep	CDS	3683944	3684041	.	-	2	Parent=Os01t0171200-02
Chr01	irgsp1_rep	CDS	3683770	3683866	.	-	0	Parent=Os01t0171200-02
Chr01	irgsp1_rep	CDS	3683434	3683523	.	-	2	Parent=Os01t0171200-02
Chr01	irgsp1_rep	CDS	3683259	3683341	.	-	2	Parent=Os01t0171200-02
Chr01	irgsp1_rep	three_prime_UTR	3682946	3683258	.	-	.	Parent=Os01t0171200-02
Chr01	irgsp1_rep	mRNA	3696155	3699718	.	-	.	ID=Os01t0171800-01;Name=Os01t0171800-01;Locus_id=Os01g0171800;Note=Conserved hypothetical protein.;Transcript_evidence=AK067987 (DDBJ%2C Best hit);ORF_evidence=Q5VQL4 (UniProt);NIAS_FLcDNA=J013121I24;Expression=AK067987;TENOR=Os01t0171800-01;KEGG=Os01t0171800-01
Chr01	irgsp1_rep	five_prime_UTR	3699536	3699718	.	-	.	Parent=Os01t0171800-01
Chr01	irgsp1_rep	five_prime_UTR	3699318	3699441	.	-	.	Parent=Os01t0171800-01
Chr01	irgsp1_rep	five_prime_UTR	3698928	3698948	.	-	.	Parent=Os01t0171800-01
Chr01	irgsp1_rep	CDS	3698566	3698927	.	-	0	Parent=Os01t0171800-01
Chr01	irgsp1_rep	CDS	3698371	3698404	.	-	1	Parent=Os01t0171800-01
Chr01	irgsp1_rep	CDS	3697934	3698143	.	-	0	Parent=Os01t0171800-01
Chr01	irgsp1_rep	CDS	3697658	3697747	.	-	0	Parent=Os01t0171800-01
Chr01	irgsp1_rep	CDS	3697251	3697316	.	-	0	Parent=Os01t0171800-01
Chr01	irgsp1_rep	CDS	3697063	3697154	.	-	0	Parent=Os01t0171800-01
Chr01	irgsp1_rep	CDS	3696925	3696972	.	-	1	Parent=Os01t0171800-01
Chr01	irgsp1_rep	CDS	3696386	3696500	.	-	1	Parent=Os01t0171800-01
Chr01	irgsp1_rep	three_prime_UTR	3696155	3696385	.	-	.	Parent=Os01t0171800-01
Chr01	irgsp1_rep	mRNA	3705424	3708989	.	-	.	ID=Os01t0172000-01;Name=Os01t0172000-01;Locus_id=Os01g0172000;Note=Glycosyltransferase%2C ALG3 domain containing protein.;Transcript_evidence=AK068405 (DDBJ%2C Best hit);ORF_evidence=A2ZPS3 (UniProt);GO=Cellular Component: endoplasmic reticulum (GO:0005783),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=Glycosyltransferase%2C ALG3 (IPR007873);NIAS_FLcDNA=J013149A07;TENOR=Os01t0172000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	3708953	3708989	.	-	.	Parent=Os01t0172000-01
Chr01	irgsp1_rep	CDS	3708829	3708952	.	-	0	Parent=Os01t0172000-01
Chr01	irgsp1_rep	CDS	3708706	3708740	.	-	2	Parent=Os01t0172000-01
Chr01	irgsp1_rep	CDS	3708481	3708618	.	-	0	Parent=Os01t0172000-01
Chr01	irgsp1_rep	CDS	3708276	3708386	.	-	0	Parent=Os01t0172000-01
Chr01	irgsp1_rep	three_prime_UTR	3707971	3708275	.	-	.	Parent=Os01t0172000-01
Chr01	irgsp1_rep	three_prime_UTR	3707800	3707866	.	-	.	Parent=Os01t0172000-01
Chr01	irgsp1_rep	three_prime_UTR	3707668	3707721	.	-	.	Parent=Os01t0172000-01
Chr01	irgsp1_rep	three_prime_UTR	3707077	3707165	.	-	.	Parent=Os01t0172000-01
Chr01	irgsp1_rep	three_prime_UTR	3706833	3706949	.	-	.	Parent=Os01t0172000-01
Chr01	irgsp1_rep	three_prime_UTR	3706380	3706486	.	-	.	Parent=Os01t0172000-01
Chr01	irgsp1_rep	three_prime_UTR	3706219	3706297	.	-	.	Parent=Os01t0172000-01
Chr01	irgsp1_rep	three_prime_UTR	3705424	3705804	.	-	.	Parent=Os01t0172000-01
Chr01	irgsp1_rep	mRNA	3711212	3713653	.	+	.	ID=Os01t0172100-01;Name=Os01t0172100-01;Locus_id=Os01g0172100;CGSNL Gene Symbol=PPT3;CGSNL Gene Name=PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR 3;Oryzabase Gene Symbol Synonym(s)=OsPPT3;Note=Similar to Triose phosphate/phosphate translocator%2C non-green plastid%2C chloroplast precursor (CTPT).;Transcript_evidence=AK060343 (DDBJ%2C Best hit);ORF_evidence=Q5VQL3 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215);InterPro=Drug/metabolite transporter (IPR000620),Tpt phosphate/phosphoenolpyruvate translocator (IPR004696),Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=001-008-E01;Oryzabase=8717;Expression=AK060343;TENOR=Os01t0172100-01;KEGG=Os01t0172100-01
Chr01	irgsp1_rep	five_prime_UTR	3711212	3711434	.	+	.	Parent=Os01t0172100-01
Chr01	irgsp1_rep	CDS	3711435	3711779	.	+	0	Parent=Os01t0172100-01
Chr01	irgsp1_rep	CDS	3711858	3711980	.	+	0	Parent=Os01t0172100-01
Chr01	irgsp1_rep	CDS	3712086	3712238	.	+	0	Parent=Os01t0172100-01
Chr01	irgsp1_rep	CDS	3712323	3712408	.	+	0	Parent=Os01t0172100-01
Chr01	irgsp1_rep	CDS	3712533	3712617	.	+	1	Parent=Os01t0172100-01
Chr01	irgsp1_rep	CDS	3712705	3712824	.	+	0	Parent=Os01t0172100-01
Chr01	irgsp1_rep	CDS	3712906	3712974	.	+	0	Parent=Os01t0172100-01
Chr01	irgsp1_rep	CDS	3713088	3713217	.	+	0	Parent=Os01t0172100-01
Chr01	irgsp1_rep	CDS	3713336	3713406	.	+	2	Parent=Os01t0172100-01
Chr01	irgsp1_rep	three_prime_UTR	3713407	3713653	.	+	.	Parent=Os01t0172100-01
Chr01	irgsp1_rep	mRNA	3713740	3718631	.	-	.	ID=Os01t0172200-01;Name=Os01t0172200-01;Locus_id=Os01g0172200;Oryzabase Gene Symbol Synonym(s)=OsRH14%2C p68;Oryzabase Gene Name Synonym(s)=RNA helicase 14;Note=DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal domain containing protein.;Transcript_evidence=AK100326 (DDBJ%2C Best hit);ORF_evidence=C6KML6 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=RNA helicase%2C ATP-dependent%2C DEAD-box%2C conserved site (IPR000629),WW/Rsp5/WWP (IPR001202),Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=J023079L21;Oryzabase=19132;Expression=AK100326;TENOR=Os01t0172200-01;KEGG=Os01t0172200-01
Chr01	irgsp1_rep	five_prime_UTR	3718432	3718631	.	-	.	Parent=Os01t0172200-01
Chr01	irgsp1_rep	five_prime_UTR	3718263	3718276	.	-	.	Parent=Os01t0172200-01
Chr01	irgsp1_rep	CDS	3718032	3718262	.	-	0	Parent=Os01t0172200-01
Chr01	irgsp1_rep	CDS	3717825	3717914	.	-	0	Parent=Os01t0172200-01
Chr01	irgsp1_rep	CDS	3717503	3717583	.	-	0	Parent=Os01t0172200-01
Chr01	irgsp1_rep	CDS	3717194	3717304	.	-	0	Parent=Os01t0172200-01
Chr01	irgsp1_rep	CDS	3716882	3717103	.	-	0	Parent=Os01t0172200-01
Chr01	irgsp1_rep	CDS	3716378	3716647	.	-	0	Parent=Os01t0172200-01
Chr01	irgsp1_rep	CDS	3715939	3716289	.	-	0	Parent=Os01t0172200-01
Chr01	irgsp1_rep	CDS	3715585	3715862	.	-	0	Parent=Os01t0172200-01
Chr01	irgsp1_rep	CDS	3715088	3715438	.	-	1	Parent=Os01t0172200-01
Chr01	irgsp1_rep	CDS	3714959	3715015	.	-	1	Parent=Os01t0172200-01
Chr01	irgsp1_rep	CDS	3714829	3714885	.	-	1	Parent=Os01t0172200-01
Chr01	irgsp1_rep	CDS	3714689	3714733	.	-	1	Parent=Os01t0172200-01
Chr01	irgsp1_rep	CDS	3714109	3714244	.	-	1	Parent=Os01t0172200-01
Chr01	irgsp1_rep	three_prime_UTR	3713740	3714108	.	-	.	Parent=Os01t0172200-01
Chr01	irgsp1_rep	mRNA	3720138	3723145	.	-	.	ID=Os01t0172300-01;Name=Os01t0172300-01;Locus_id=Os01g0172300;Note=Conserved hypothetical protein.;Transcript_evidence=AK106113 (DDBJ%2C Best hit);ORF_evidence=B8ADH6 (UniProt);NIAS_FLcDNA=001-207-E01;Expression=AK106113;TENOR=Os01t0172300-01;KEGG=Os01t0172300-01
Chr01	irgsp1_rep	five_prime_UTR	3722936	3723145	.	-	.	Parent=Os01t0172300-01
Chr01	irgsp1_rep	CDS	3722781	3722935	.	-	0	Parent=Os01t0172300-01
Chr01	irgsp1_rep	CDS	3722155	3722348	.	-	1	Parent=Os01t0172300-01
Chr01	irgsp1_rep	CDS	3721220	3721310	.	-	2	Parent=Os01t0172300-01
Chr01	irgsp1_rep	CDS	3720522	3720588	.	-	1	Parent=Os01t0172300-01
Chr01	irgsp1_rep	CDS	3720400	3720453	.	-	0	Parent=Os01t0172300-01
Chr01	irgsp1_rep	three_prime_UTR	3720138	3720399	.	-	.	Parent=Os01t0172300-01
Chr01	irgsp1_rep	mRNA	3725174	3728791	.	-	.	ID=Os01t0172400-01;Name=Os01t0172400-01;Locus_id=Os01g0172400;CGSNL Gene Symbol=PLDalpha1;CGSNL Gene Name=PHOSPHOLIPASE  D ALPHA 1;Oryzabase Gene Symbol Synonym(s)=RPLD1%2C PLD1%2C OsPLDalpha1;Oryzabase Gene Name Synonym(s)=Rice phospholipase D-1%2C Phospholipase D alpha 1%2C PLD alpha 1%2C Choline phosphatase 1%2C Phosphatidylcholine-hydrolyzing phospholipase D 1%2C phospholipase Dalpha1;Note=Similar to Phospholipase D alpha 1.;Transcript_evidence=AK100365 (DDBJ%2C Best hit);ORF_evidence=Q43007 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: phosphatidylcholine metabolic process (GO:0046470),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phospholipase D activity (GO:0004630),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),Phospholipase D/Transphosphatidylase (IPR001736),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),Phospholipase D%2C plant (IPR011402),Phospholipase D (IPR015679);NIAS_FLcDNA=J023083O10;Oryzabase=2951;TENOR=Os01t0172400-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	3728650	3728791	.	-	.	Parent=Os01t0172400-01
Chr01	irgsp1_rep	five_prime_UTR	3728440	3728476	.	-	.	Parent=Os01t0172400-01
Chr01	irgsp1_rep	CDS	3728332	3728439	.	-	0	Parent=Os01t0172400-01
Chr01	irgsp1_rep	CDS	3725895	3727791	.	-	0	Parent=Os01t0172400-01
Chr01	irgsp1_rep	CDS	3725174	3725416	.	-	2	Parent=Os01t0172400-01
Chr01	irgsp1_rep	mRNA	3724710	3728731	.	-	.	ID=Os01t0172400-02;Name=Os01t0172400-02;Locus_id=Os01g0172400;RAP-DB Gene Symbol Synonym(s)=OsPLD&alpha%3B1%2C OsPLDalpha1;RAP-DB Gene Name Synonym(s)=phospholipase D&alpha%3B1%2C phospholipase Dalpha1;CGSNL Gene Symbol=PLDalpha1;CGSNL Gene Name=PHOSPHOLIPASE  D ALPHA 1;Oryzabase Gene Symbol Synonym(s)=RPLD1%2C PLD1%2C OsPLDalpha1;Oryzabase Gene Name Synonym(s)=Rice phospholipase D-1%2C Phospholipase D alpha 1%2C PLD alpha 1%2C Choline phosphatase 1%2C Phosphatidylcholine-hydrolyzing phospholipase D 1%2C phospholipase Dalpha1;Note=Phospholipase D alpha 1 (EC:3.1.4.4)%2C Drought tolerance%2C Regulation of cold acclimation signaling;Transcript_evidence=AK119523;ORF_evidence=Q43007;GO=Biological Process: phosphatidylcholine metabolic process (GO:0046470),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phospholipase D activity (GO:0004630),Molecular Function: calcium ion binding (GO:0005509),Cellular Component: membrane (GO:0016020);InterPro=C2 domain superfamily (IPR035892),Phospholipase D%2C plant (IPR011402),C2 domain (IPR000008),Phospholipase D/Transphosphatidylase (IPR001736),Phospholipase D%2C C-terminal (IPR024632);NIAS_FLcDNA=001-202-E03;Manual Curation=June 1%2C 2018;Literature_PMID=29846801,26747563;Oryzabase=2951;Expression=AK119523;TENOR=Os01t0172400-02;Subcellular location=cytoplasm (GO:0005737)
Chr01	irgsp1_rep	five_prime_UTR	3728650	3728731	.	-	.	Parent=Os01t0172400-02
Chr01	irgsp1_rep	five_prime_UTR	3728440	3728476	.	-	.	Parent=Os01t0172400-02
Chr01	irgsp1_rep	CDS	3728332	3728439	.	-	0	Parent=Os01t0172400-02
Chr01	irgsp1_rep	CDS	3725895	3727791	.	-	0	Parent=Os01t0172400-02
Chr01	irgsp1_rep	CDS	3724983	3725416	.	-	2	Parent=Os01t0172400-02
Chr01	irgsp1_rep	three_prime_UTR	3724710	3724982	.	-	.	Parent=Os01t0172400-02
Chr01	irgsp1_rep	mRNA	3724684	3728551	.	-	.	ID=Os01t0172400-03;Name=Os01t0172400-03;Locus_id=Os01g0172400;CGSNL Gene Symbol=PLDalpha1;CGSNL Gene Name=PHOSPHOLIPASE  D ALPHA 1;Oryzabase Gene Symbol Synonym(s)=RPLD1%2C PLD1%2C OsPLDalpha1;Oryzabase Gene Name Synonym(s)=Rice phospholipase D-1%2C Phospholipase D alpha 1%2C PLD alpha 1%2C Choline phosphatase 1%2C Phosphatidylcholine-hydrolyzing phospholipase D 1%2C phospholipase Dalpha1;Note=Phospholipase D alpha 1 precursor (EC 3.1.4.4) (PLD alpha 1) (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1).;Transcript_evidence=AK065102 (DDBJ%2C Best hit);ORF_evidence=Q43007 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: phosphatidylcholine metabolic process (GO:0046470),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phospholipase D activity (GO:0004630),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),Phospholipase D/Transphosphatidylase (IPR001736),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),Phospholipase D%2C plant (IPR011402),Phospholipase D (IPR015679),Phospholipase D%2C C-terminal (IPR024632);NIAS_FLcDNA=J013001N03;Oryzabase=2951;Expression=AK065102;TENOR=Os01t0172400-03;KEGG=Os01t0172400-03 (EC:3.1.4.4)
Chr01	irgsp1_rep	five_prime_UTR	3728440	3728551	.	-	.	Parent=Os01t0172400-03
Chr01	irgsp1_rep	CDS	3728332	3728439	.	-	0	Parent=Os01t0172400-03
Chr01	irgsp1_rep	CDS	3725895	3727791	.	-	0	Parent=Os01t0172400-03
Chr01	irgsp1_rep	CDS	3724983	3725416	.	-	2	Parent=Os01t0172400-03
Chr01	irgsp1_rep	three_prime_UTR	3724684	3724982	.	-	.	Parent=Os01t0172400-03
Chr01	irgsp1_rep	mRNA	3725174	3727006	.	-	.	ID=Os01t0172400-04;Name=Os01t0172400-04;Locus_id=Os01g0172400;CGSNL Gene Symbol=PLDalpha1;CGSNL Gene Name=PHOSPHOLIPASE  D ALPHA 1;Oryzabase Gene Symbol Synonym(s)=RPLD1%2C PLD1%2C OsPLDalpha1;Oryzabase Gene Name Synonym(s)=Rice phospholipase D-1%2C Phospholipase D alpha 1%2C PLD alpha 1%2C Choline phosphatase 1%2C Phosphatidylcholine-hydrolyzing phospholipase D 1%2C phospholipase Dalpha1;Note=Similar to Phospholipase D alpha 1.;Transcript_evidence=AK066556 (DDBJ%2C Best hit);ORF_evidence=B8ADH7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Phospholipase D/Transphosphatidylase (IPR001736),Phospholipase D (IPR015679);NIAS_FLcDNA=J013073D11;Oryzabase=2951;TENOR=Os01t0172400-04
Chr01	irgsp1_rep	five_prime_UTR	3727006	3727006	.	-	.	Parent=Os01t0172400-04
Chr01	irgsp1_rep	CDS	3725895	3727005	.	-	0	Parent=Os01t0172400-04
Chr01	irgsp1_rep	CDS	3725174	3725416	.	-	2	Parent=Os01t0172400-04
Chr01	irgsp1_rep	mRNA	3724667	3726228	.	-	.	ID=Os01t0172400-05;Name=Os01t0172400-05;Locus_id=Os01g0172400;CGSNL Gene Symbol=PLDalpha1;CGSNL Gene Name=PHOSPHOLIPASE  D ALPHA 1;Oryzabase Gene Symbol Synonym(s)=RPLD1%2C PLD1%2C OsPLDalpha1;Oryzabase Gene Name Synonym(s)=Rice phospholipase D-1%2C Phospholipase D alpha 1%2C PLD alpha 1%2C Choline phosphatase 1%2C Phosphatidylcholine-hydrolyzing phospholipase D 1%2C phospholipase Dalpha1;Note=Similar to Phospholipase D alpha 1.;Transcript_evidence=AK061865 (DDBJ%2C Best hit);ORF_evidence=B8ADH7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Phospholipase D/Transphosphatidylase (IPR001736),Phospholipase D (IPR015679),Phospholipase D%2C C-terminal (IPR024632);NIAS_FLcDNA=001-040-H06;Oryzabase=2951;Expression=AK061865;TENOR=Os01t0172400-05;KEGG=Os01t0172400-05 (EC:3.1.4.4)
Chr01	irgsp1_rep	CDS	3725895	3726228	.	-	0	Parent=Os01t0172400-05
Chr01	irgsp1_rep	CDS	3724983	3725416	.	-	2	Parent=Os01t0172400-05
Chr01	irgsp1_rep	three_prime_UTR	3724667	3724982	.	-	.	Parent=Os01t0172400-05
Chr01	irgsp1_rep	mRNA	3732525	3734022	.	+	.	ID=Os01t0172600-01;Name=Os01t0172600-01;Locus_id=Os01g0172600;Note=Similar to electron carrier/ heme binding / peroxidase.;Transcript_evidence=AK058554 (DDBJ%2C Best hit);ORF_evidence=NP_181679.3 (RefSeq);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793);NIAS_FLcDNA=001-017-C12;TENOR=Os01t0172600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	3732525	3732525	.	+	.	Parent=Os01t0172600-01
Chr01	irgsp1_rep	CDS	3732526	3732624	.	+	0	Parent=Os01t0172600-01
Chr01	irgsp1_rep	CDS	3732731	3732893	.	+	0	Parent=Os01t0172600-01
Chr01	irgsp1_rep	CDS	3733509	3733930	.	+	2	Parent=Os01t0172600-01
Chr01	irgsp1_rep	three_prime_UTR	3733931	3734022	.	+	.	Parent=Os01t0172600-01
Chr01	irgsp1_rep	mRNA	3732983	3733967	.	-	.	ID=Os01t0172701-00;Name=Os01t0172701-00;Locus_id=Os01g0172701;Note=Regulator of Chromosome condensation%2C RCC1 domain containing protein.;Transcript_evidence=CT833782 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os01t0172701-00;KEGG=Os01t0172701-00
Chr01	irgsp1_rep	five_prime_UTR	3733967	3733967	.	-	.	Parent=Os01t0172701-00
Chr01	irgsp1_rep	CDS	3733487	3733966	.	-	0	Parent=Os01t0172701-00
Chr01	irgsp1_rep	three_prime_UTR	3732983	3733486	.	-	.	Parent=Os01t0172701-00
Chr01	irgsp1_rep	mRNA	3735961	3736782	.	+	.	ID=Os01t0172800-01;Name=Os01t0172800-01;Locus_id=Os01g0172800;Note=Embryo-specific 3 family protein.;Transcript_evidence=AK067273 (DDBJ%2C Best hit);ORF_evidence=B6U3F4 (UniProt);InterPro=Lipase/lipooxygenase%2C PLAT/LH2 (IPR008976),Embryo-specific 3 (IPR010417);NIAS_FLcDNA=J013098J12;Expression=AK067273;TENOR=Os01t0172800-01;KEGG=Os01t0172800-01
Chr01	irgsp1_rep	five_prime_UTR	3735961	3736004	.	+	.	Parent=Os01t0172800-01
Chr01	irgsp1_rep	CDS	3736005	3736580	.	+	0	Parent=Os01t0172800-01
Chr01	irgsp1_rep	three_prime_UTR	3736581	3736782	.	+	.	Parent=Os01t0172800-01
Chr01	irgsp1_rep	mRNA	3737752	3740685	.	+	.	ID=Os01t0172900-00;Name=Os01t0172900-00;Locus_id=Os01g0172900;Oryzabase Gene Symbol Synonym(s)=PG;Oryzabase Gene Name Synonym(s)=POLYGALACTURONASE;Note=Glycoside hydrolase%2C family 28 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9ETD9 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);Oryzabase=19094;TENOR=Os01t0172900-00
Chr01	irgsp1_rep	CDS	3737752	3737944	.	+	0	Parent=Os01t0172900-00
Chr01	irgsp1_rep	CDS	3738695	3738765	.	+	2	Parent=Os01t0172900-00
Chr01	irgsp1_rep	CDS	3738879	3739010	.	+	0	Parent=Os01t0172900-00
Chr01	irgsp1_rep	CDS	3739129	3739278	.	+	0	Parent=Os01t0172900-00
Chr01	irgsp1_rep	CDS	3740245	3740358	.	+	0	Parent=Os01t0172900-00
Chr01	irgsp1_rep	CDS	3740458	3740685	.	+	0	Parent=Os01t0172900-00
Chr01	irgsp1_rep	mRNA	3737904	3742067	.	-	.	ID=Os01t0173000-01;Name=Os01t0173000-01;Locus_id=Os01g0173000;Note=Putative thiol-disulphide oxidoreductase DCC domain containing protein.;Transcript_evidence=AK287669 (DDBJ%2C Best hit);ORF_evidence=GeneMark;InterPro=Putative thiol-disulphide oxidoreductase DCC (IPR007263);NIAS_FLcDNA=J065118E23;TENOR=Os01t0173000-01;KEGG=Os01t0173000-01
Chr01	irgsp1_rep	five_prime_UTR	3742067	3742067	.	-	.	Parent=Os01t0173000-01
Chr01	irgsp1_rep	CDS	3741778	3742066	.	-	0	Parent=Os01t0173000-01
Chr01	irgsp1_rep	CDS	3741559	3741616	.	-	2	Parent=Os01t0173000-01
Chr01	irgsp1_rep	CDS	3741346	3741453	.	-	1	Parent=Os01t0173000-01
Chr01	irgsp1_rep	CDS	3741116	3741212	.	-	1	Parent=Os01t0173000-01
Chr01	irgsp1_rep	three_prime_UTR	3738851	3741115	.	-	.	Parent=Os01t0173000-01
Chr01	irgsp1_rep	three_prime_UTR	3737904	3738736	.	-	.	Parent=Os01t0173000-01
Chr01	irgsp1_rep	mRNA	3742778	3744461	.	-	.	ID=Os01t0173100-01;Name=Os01t0173100-01;Locus_id=Os01g0173100;CGSNL Gene Symbol=ALBA1;CGSNL Gene Name=ACETYLATION LOWERS BINDING AFFINITY 1;Oryzabase Gene Symbol Synonym(s)=OsAlba1%2C Alba1;Oryzabase Gene Name Synonym(s)=acetylation lowers binding affinity protein 1%2C acetylation lowers binding affinity 1%2C Alba family protein 1;Note=Alba%2C DNA/RNA-binding protein family protein.;Transcript_evidence=AK121114 (DDBJ%2C Best hit);ORF_evidence=NP_564325.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=DNA/RNA-binding protein Alba-like (IPR002775),Uncharacterised conserved protein UCP030333%2C DNA/RNA-binding Alba-related (IPR014560);NIAS_FLcDNA=J023073M05;Oryzabase=15659;Expression=AK121114;TENOR=Os01t0173100-01;KEGG=Os01t0173100-01
Chr01	irgsp1_rep	five_prime_UTR	3744388	3744461	.	-	.	Parent=Os01t0173100-01
Chr01	irgsp1_rep	CDS	3744202	3744387	.	-	0	Parent=Os01t0173100-01
Chr01	irgsp1_rep	CDS	3744057	3744105	.	-	0	Parent=Os01t0173100-01
Chr01	irgsp1_rep	CDS	3743377	3743439	.	-	2	Parent=Os01t0173100-01
Chr01	irgsp1_rep	CDS	3743170	3743234	.	-	2	Parent=Os01t0173100-01
Chr01	irgsp1_rep	CDS	3742949	3743044	.	-	0	Parent=Os01t0173100-01
Chr01	irgsp1_rep	three_prime_UTR	3742778	3742948	.	-	.	Parent=Os01t0173100-01
Chr01	irgsp1_rep	mRNA	3779634	3782002	.	+	.	ID=Os01t0173600-00;Name=Os01t0173600-00;Locus_id=Os01g0173600;CGSNL Gene Symbol=GLYI1;CGSNL Gene Name=GLYOXALASE I-1;Oryzabase Gene Symbol Synonym(s)=OsGLYI1;Oryzabase Gene Name Synonym(s)=glyoxalase I-1;Note=Glyoxalase/bleomycin resistance protein/dioxygenase domain containing protein.;Transcript_evidence=CT835513 (DDBJ%2C Best hit);ORF_evidence=B4ERW1 (UniProt);Oryzabase=9351;TENOR=Os01t0173600-00;KEGG=Os01t0173600-00
Chr01	irgsp1_rep	five_prime_UTR	3779634	3779890	.	+	.	Parent=Os01t0173600-00
Chr01	irgsp1_rep	CDS	3779891	3780069	.	+	0	Parent=Os01t0173600-00
Chr01	irgsp1_rep	CDS	3780436	3780541	.	+	1	Parent=Os01t0173600-00
Chr01	irgsp1_rep	CDS	3781526	3781888	.	+	0	Parent=Os01t0173600-00
Chr01	irgsp1_rep	three_prime_UTR	3781889	3782002	.	+	.	Parent=Os01t0173600-00
Chr01	irgsp1_rep	mRNA	3804672	3810720	.	+	.	ID=Os01t0173900-01;Name=Os01t0173900-01;Locus_id=Os01g0173900;CGSNL Gene Symbol=MRP3;CGSNL Gene Name=MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsABCC3%2C OsMRP3;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCC subgroup member 3%2C multidrug resistance-associated protein 3;Note=Similar to MRP-like ABC transporter.;Transcript_evidence=AK121690 (DDBJ%2C Best hit);ORF_evidence=Q71CZ3 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);NIAS_FLcDNA=J033071F24;Oryzabase=11954;Expression=AK121690;TENOR=Os01t0173900-01;KEGG=Os01t0173900-01
Chr01	irgsp1_rep	five_prime_UTR	3804672	3804703	.	+	.	Parent=Os01t0173900-01
Chr01	irgsp1_rep	CDS	3804704	3807106	.	+	0	Parent=Os01t0173900-01
Chr01	irgsp1_rep	CDS	3807226	3807312	.	+	0	Parent=Os01t0173900-01
Chr01	irgsp1_rep	CDS	3807397	3808035	.	+	0	Parent=Os01t0173900-01
Chr01	irgsp1_rep	CDS	3808118	3808282	.	+	0	Parent=Os01t0173900-01
Chr01	irgsp1_rep	CDS	3808363	3808657	.	+	0	Parent=Os01t0173900-01
Chr01	irgsp1_rep	CDS	3808739	3808953	.	+	2	Parent=Os01t0173900-01
Chr01	irgsp1_rep	CDS	3809125	3809430	.	+	0	Parent=Os01t0173900-01
Chr01	irgsp1_rep	CDS	3809539	3809602	.	+	0	Parent=Os01t0173900-01
Chr01	irgsp1_rep	CDS	3809735	3809974	.	+	2	Parent=Os01t0173900-01
Chr01	irgsp1_rep	CDS	3810150	3810253	.	+	2	Parent=Os01t0173900-01
Chr01	irgsp1_rep	three_prime_UTR	3810254	3810720	.	+	.	Parent=Os01t0173900-01
Chr01	irgsp1_rep	mRNA	3809533	3810254	.	-	.	ID=Os01t0173950-00;Name=Os01t0173950-00;Locus_id=Os01g0173950;Note=Non-protein coding transcript.;Transcript_evidence=tplb0011b09 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os01t0173950-00
Chr01	irgsp1_rep	exon	3810054	3810254	.	-	.	Parent=Os01t0173950-00
Chr01	irgsp1_rep	exon	3809533	3809989	.	-	.	Parent=Os01t0173950-00
Chr01	irgsp1_rep	mRNA	3811094	3812179	.	-	.	ID=Os01t0174000-01;Name=Os01t0174000-01;Locus_id=Os01g0174000;RAP-DB Gene Symbol Synonym(s)=OsHY5L3%2C OsbZIP01%2C OsRE1;RAP-DB Gene Name Synonym(s)=LONG HYPOCOTYL 5 LIKE 3%2C HY5-like 3%2C b-ZIP transcription factor 01%2C Regulator of Ehd1;CGSNL Gene Symbol=BZIP1;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 1;Oryzabase Gene Symbol Synonym(s)=OsbZIP01%2C OsbZIP1;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 01;Note=bZIP transcription factor%2C Homolog of Arabidopsis HY5 transcription factor%2C Regulation of heading date;Transcript_evidence=EU976642 (maize);ORF_evidence=Q0JQA4;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA-binding transcription factor activity (GO:0003700);InterPro=Basic-leucine zipper domain (IPR004827);Manual Curation=August 7%2C 2020;Literature_PMID=32757315,31084872,28775143;Oryzabase=10092;TENOR=Os01t0174000-00
Chr01	irgsp1_rep	five_prime_UTR	3812070	3812179	.	-	.	Parent=Os01t0174000-01
Chr01	irgsp1_rep	CDS	3811949	3812069	.	-	0	Parent=Os01t0174000-01
Chr01	irgsp1_rep	CDS	3811469	3811851	.	-	2	Parent=Os01t0174000-01
Chr01	irgsp1_rep	CDS	3811290	3811397	.	-	0	Parent=Os01t0174000-01
Chr01	irgsp1_rep	three_prime_UTR	3811094	3811289	.	-	.	Parent=Os01t0174000-01
Chr01	irgsp1_rep	mRNA	3818050	3818753	.	-	.	ID=Os01t0174100-01;Name=Os01t0174100-01;Locus_id=Os01g0174100;Note=Conserved hypothetical protein.;Transcript_evidence=AK120465 (DDBJ%2C Best hit);ORF_evidence=A2WL90 (UniProt);NIAS_FLcDNA=J013108I08;Expression=AK120465;TENOR=Os01t0174100-01;KEGG=Os01t0174100-01
Chr01	irgsp1_rep	five_prime_UTR	3818705	3818753	.	-	.	Parent=Os01t0174100-01
Chr01	irgsp1_rep	CDS	3818369	3818704	.	-	0	Parent=Os01t0174100-01
Chr01	irgsp1_rep	three_prime_UTR	3818050	3818368	.	-	.	Parent=Os01t0174100-01
Chr01	irgsp1_rep	mRNA	3819099	3819782	.	-	.	ID=Os01t0174200-01;Name=Os01t0174200-01;Locus_id=Os01g0174200;Note=Hypothetical protein.;Transcript_evidence=AK121228 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023091M12;Expression=AK121228;TENOR=Os01t0174200-01;KEGG=Os01t0174200-01
Chr01	irgsp1_rep	five_prime_UTR	3819586	3819782	.	-	.	Parent=Os01t0174200-01
Chr01	irgsp1_rep	CDS	3819286	3819585	.	-	0	Parent=Os01t0174200-01
Chr01	irgsp1_rep	three_prime_UTR	3819099	3819285	.	-	.	Parent=Os01t0174200-01
Chr01	irgsp1_rep	mRNA	3820177	3824512	.	-	.	ID=Os01t0174300-01;Name=Os01t0174300-01;Locus_id=Os01g0174300;Note=Flavoprotein pyridine nucleotide cytoChrome reductase domain containing protein.;Transcript_evidence=AK071324 (DDBJ%2C Best hit);ORF_evidence=B6TCK3 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Oxidoreductase FAD/NAD(P)-binding (IPR001433),Flavoprotein pyridine nucleotide cytoChrome reductase (IPR001709),NADH:cytoChrome b5 reductase (CBR) (IPR001834),Oxidoreductase%2C FAD-binding domain (IPR008333),Ferredoxin reductase-type FAD-binding domain (IPR017927),Riboflavin synthase-like beta-barrel (IPR017938);NIAS_FLcDNA=J023089J04;TENOR=Os01t0174300-01
Chr01	irgsp1_rep	five_prime_UTR	3824350	3824512	.	-	.	Parent=Os01t0174300-01
Chr01	irgsp1_rep	CDS	3824230	3824349	.	-	0	Parent=Os01t0174300-01
Chr01	irgsp1_rep	CDS	3824108	3824150	.	-	0	Parent=Os01t0174300-01
Chr01	irgsp1_rep	CDS	3823367	3823442	.	-	2	Parent=Os01t0174300-01
Chr01	irgsp1_rep	CDS	3822889	3822948	.	-	1	Parent=Os01t0174300-01
Chr01	irgsp1_rep	CDS	3822372	3822422	.	-	1	Parent=Os01t0174300-01
Chr01	irgsp1_rep	CDS	3822216	3822270	.	-	1	Parent=Os01t0174300-01
Chr01	irgsp1_rep	CDS	3822021	3822091	.	-	0	Parent=Os01t0174300-01
Chr01	irgsp1_rep	CDS	3821885	3821936	.	-	1	Parent=Os01t0174300-01
Chr01	irgsp1_rep	CDS	3821666	3821743	.	-	0	Parent=Os01t0174300-01
Chr01	irgsp1_rep	CDS	3821330	3821419	.	-	0	Parent=Os01t0174300-01
Chr01	irgsp1_rep	CDS	3821127	3821240	.	-	0	Parent=Os01t0174300-01
Chr01	irgsp1_rep	CDS	3820867	3820935	.	-	0	Parent=Os01t0174300-01
Chr01	irgsp1_rep	CDS	3820479	3820535	.	-	0	Parent=Os01t0174300-01
Chr01	irgsp1_rep	three_prime_UTR	3820177	3820478	.	-	.	Parent=Os01t0174300-01
Chr01	irgsp1_rep	mRNA	3820189	3824433	.	-	.	ID=Os01t0174300-02;Name=Os01t0174300-02;Locus_id=Os01g0174300;Note=Flavoprotein pyridine nucleotide cytoChrome reductase domain containing protein.;Transcript_evidence=AK104306 (DDBJ%2C Best hit);ORF_evidence=B6TCK3 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Oxidoreductase FAD/NAD(P)-binding (IPR001433),Flavoprotein pyridine nucleotide cytoChrome reductase (IPR001709),NADH:cytoChrome b5 reductase (CBR) (IPR001834),Oxidoreductase%2C FAD-binding domain (IPR008333),Ferredoxin reductase-type FAD-binding domain (IPR017927),Riboflavin synthase-like beta-barrel (IPR017938);NIAS_FLcDNA=001-012-E03;TENOR=Os01t0174300-02
Chr01	irgsp1_rep	five_prime_UTR	3824350	3824433	.	-	.	Parent=Os01t0174300-02
Chr01	irgsp1_rep	CDS	3824230	3824349	.	-	0	Parent=Os01t0174300-02
Chr01	irgsp1_rep	CDS	3824108	3824150	.	-	0	Parent=Os01t0174300-02
Chr01	irgsp1_rep	CDS	3823367	3823442	.	-	2	Parent=Os01t0174300-02
Chr01	irgsp1_rep	CDS	3822889	3822948	.	-	1	Parent=Os01t0174300-02
Chr01	irgsp1_rep	CDS	3822372	3822422	.	-	1	Parent=Os01t0174300-02
Chr01	irgsp1_rep	CDS	3822216	3822270	.	-	1	Parent=Os01t0174300-02
Chr01	irgsp1_rep	CDS	3822021	3822091	.	-	0	Parent=Os01t0174300-02
Chr01	irgsp1_rep	CDS	3821885	3821936	.	-	1	Parent=Os01t0174300-02
Chr01	irgsp1_rep	CDS	3821666	3821743	.	-	0	Parent=Os01t0174300-02
Chr01	irgsp1_rep	CDS	3821330	3821419	.	-	0	Parent=Os01t0174300-02
Chr01	irgsp1_rep	CDS	3821127	3821240	.	-	0	Parent=Os01t0174300-02
Chr01	irgsp1_rep	CDS	3820867	3820935	.	-	0	Parent=Os01t0174300-02
Chr01	irgsp1_rep	CDS	3820479	3820535	.	-	0	Parent=Os01t0174300-02
Chr01	irgsp1_rep	three_prime_UTR	3820189	3820478	.	-	.	Parent=Os01t0174300-02
Chr01	irgsp1_rep	mRNA	3825669	3829404	.	+	.	ID=Os01t0174400-01;Name=Os01t0174400-01;Locus_id=Os01g0174400;Note=Hypothetical gene.;Transcript_evidence=AK242096 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J075142L02;TENOR=Os01t0174400-01;KEGG=Os01t0174400-01
Chr01	irgsp1_rep	five_prime_UTR	3825669	3825669	.	+	.	Parent=Os01t0174400-01
Chr01	irgsp1_rep	CDS	3825670	3825915	.	+	0	Parent=Os01t0174400-01
Chr01	irgsp1_rep	three_prime_UTR	3825916	3826026	.	+	.	Parent=Os01t0174400-01
Chr01	irgsp1_rep	three_prime_UTR	3826168	3826327	.	+	.	Parent=Os01t0174400-01
Chr01	irgsp1_rep	three_prime_UTR	3826855	3829404	.	+	.	Parent=Os01t0174400-01
Chr01	irgsp1_rep	mRNA	3827045	3830326	.	-	.	ID=Os01t0174500-01;Name=Os01t0174500-01;Locus_id=Os01g0174500;Note=Metridin-like ShK toxin domain containing protein.;Transcript_evidence=AK070484 (DDBJ%2C Best hit);ORF_evidence=B8ADI2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: L-ascorbic acid binding (GO:0031418);InterPro=Metridin-like ShK toxin (IPR003582),Prolyl 4-hydroxylase%2C alpha subunit (IPR006620);NIAS_FLcDNA=J023048G08;Expression=AK070484;TENOR=Os01t0174500-01;KEGG=Os01t0174500-01 (EC:1.14.11.2)
Chr01	irgsp1_rep	five_prime_UTR	3830268	3830326	.	-	.	Parent=Os01t0174500-01
Chr01	irgsp1_rep	CDS	3830182	3830267	.	-	0	Parent=Os01t0174500-01
Chr01	irgsp1_rep	CDS	3829231	3829347	.	-	1	Parent=Os01t0174500-01
Chr01	irgsp1_rep	CDS	3828582	3828639	.	-	1	Parent=Os01t0174500-01
Chr01	irgsp1_rep	CDS	3828426	3828497	.	-	0	Parent=Os01t0174500-01
Chr01	irgsp1_rep	CDS	3827992	3828049	.	-	0	Parent=Os01t0174500-01
Chr01	irgsp1_rep	CDS	3827758	3827918	.	-	2	Parent=Os01t0174500-01
Chr01	irgsp1_rep	CDS	3827257	3827616	.	-	0	Parent=Os01t0174500-01
Chr01	irgsp1_rep	three_prime_UTR	3827045	3827256	.	-	.	Parent=Os01t0174500-01
Chr01	irgsp1_rep	mRNA	3827072	3827847	.	-	.	ID=Os01t0174500-02;Name=Os01t0174500-02;Locus_id=Os01g0174500;Note=Similar to cDNA clone:J023048G08%2C full insert sequence.;Transcript_evidence=AK104673 (DDBJ%2C Best hit);ORF_evidence=B7EHY4 (UniProt);InterPro=Metridin-like ShK toxin (IPR003582);NIAS_FLcDNA=001-026-G11;Expression=AK104673;TENOR=Os01t0174500-02;KEGG=Os01t0174500-02 (EC:1.14.11.2)
Chr01	irgsp1_rep	CDS	3827758	3827847	.	-	0	Parent=Os01t0174500-02
Chr01	irgsp1_rep	CDS	3827257	3827616	.	-	0	Parent=Os01t0174500-02
Chr01	irgsp1_rep	three_prime_UTR	3827072	3827256	.	-	.	Parent=Os01t0174500-02
Chr01	irgsp1_rep	mRNA	3830492	3831846	.	-	.	ID=Os01t0174600-01;Name=Os01t0174600-01;Locus_id=Os01g0174600;CGSNL Gene Symbol=C3H1;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsC3H1%2C OsEnS-1;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 1%2C endosperm-specific gene 1;Note=Zinc finger%2C CCCH-type domain containing protein.;Transcript_evidence=AK107662 (DDBJ%2C Best hit);ORF_evidence=B8ADI0 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=002-131-G11;Oryzabase=8572;Expression=AK107662;TENOR=Os01t0174600-01;KEGG=Os01t0174600-01
Chr01	irgsp1_rep	five_prime_UTR	3831781	3831846	.	-	.	Parent=Os01t0174600-01
Chr01	irgsp1_rep	CDS	3831276	3831780	.	-	0	Parent=Os01t0174600-01
Chr01	irgsp1_rep	CDS	3830798	3831132	.	-	2	Parent=Os01t0174600-01
Chr01	irgsp1_rep	three_prime_UTR	3830492	3830797	.	-	.	Parent=Os01t0174600-01
Chr01	irgsp1_rep	mRNA	3835129	3837642	.	-	.	ID=Os01t0174700-01;Name=Os01t0174700-01;Locus_id=Os01g0174700;CGSNL Gene Symbol=PIDL;CGSNL Gene Name=PINOID-LIKE;Oryzabase Gene Symbol Synonym(s)=OsPIDL;Oryzabase Gene Name Synonym(s)=OsPINOID-like%2C OsPIDlike;Note=Similar to Akt (Fragment).;Transcript_evidence=AK101660 (DDBJ%2C Best hit),AK062282 (DDBJ%2C Best hit);ORF_evidence=NP_199586.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033057J01,001-100-C06;Oryzabase=10525;Expression=AK101660;TENOR=Os01t0174700-01;KEGG=Os01t0174700-01 (EC:2.7.11.1)
Chr01	irgsp1_rep	five_prime_UTR	3837573	3837642	.	-	.	Parent=Os01t0174700-01
Chr01	irgsp1_rep	CDS	3836992	3837572	.	-	0	Parent=Os01t0174700-01
Chr01	irgsp1_rep	CDS	3835551	3836451	.	-	1	Parent=Os01t0174700-01
Chr01	irgsp1_rep	three_prime_UTR	3835129	3835550	.	-	.	Parent=Os01t0174700-01
Chr01	irgsp1_rep	mRNA	3835421	3836808	.	-	.	ID=Os01t0174700-03;Name=Os01t0174700-03;Locus_id=Os01g0174700;CGSNL Gene Symbol=PIDL;CGSNL Gene Name=PINOID-LIKE;Oryzabase Gene Symbol Synonym(s)=OsPIDL;Oryzabase Gene Name Synonym(s)=OsPINOID-like%2C OsPIDlike;Note=Similar to predicted protein.;Transcript_evidence=AK073313 (DDBJ%2C Best hit);ORF_evidence=A2WL93 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033027F03;Oryzabase=10525;Expression=AK073313;TENOR=Os01t0174700-03;KEGG=Os01t0174700-03 (EC:2.7.11.13)
Chr01	irgsp1_rep	five_prime_UTR	3836472	3836808	.	-	.	Parent=Os01t0174700-03
Chr01	irgsp1_rep	CDS	3835551	3836471	.	-	0	Parent=Os01t0174700-03
Chr01	irgsp1_rep	three_prime_UTR	3835421	3835550	.	-	.	Parent=Os01t0174700-03
Chr01	irgsp1_rep	mRNA	3842779	3845436	.	+	.	ID=Os01t0174900-01;Name=Os01t0174900-01;Locus_id=Os01g0174900;CGSNL Gene Symbol=GRX1;CGSNL Gene Name=GLUTAREDOXIN 1;Oryzabase Gene Symbol Synonym(s)=OsGRX1;Oryzabase Gene Name Synonym(s)=glutaredoxin 1;Note=Thioredoxin fold domain containing protein.;Transcript_evidence=AK060966 (DDBJ%2C Best hit),AK104777 (DDBJ%2C Best hit);ORF_evidence=Q0JQ97 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin (IPR002109),Monothiol glutaredoxin-related (IPR004480),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=006-202-C01,001-039-C02;Oryzabase=13580;Expression=AK060966;TENOR=Os01t0174900-01;KEGG=Os01t0174900-01
Chr01	irgsp1_rep	five_prime_UTR	3842779	3842893	.	+	.	Parent=Os01t0174900-01
Chr01	irgsp1_rep	five_prime_UTR	3843040	3843046	.	+	.	Parent=Os01t0174900-01
Chr01	irgsp1_rep	CDS	3843047	3843115	.	+	0	Parent=Os01t0174900-01
Chr01	irgsp1_rep	CDS	3843905	3844081	.	+	0	Parent=Os01t0174900-01
Chr01	irgsp1_rep	CDS	3844221	3844320	.	+	0	Parent=Os01t0174900-01
Chr01	irgsp1_rep	CDS	3844416	3844482	.	+	2	Parent=Os01t0174900-01
Chr01	irgsp1_rep	CDS	3844974	3845048	.	+	1	Parent=Os01t0174900-01
Chr01	irgsp1_rep	CDS	3845152	3845221	.	+	1	Parent=Os01t0174900-01
Chr01	irgsp1_rep	three_prime_UTR	3845222	3845436	.	+	.	Parent=Os01t0174900-01
Chr01	irgsp1_rep	mRNA	3846284	3850209	.	-	.	ID=Os01t0175000-01;Name=Os01t0175000-01;Locus_id=Os01g0175000;Note=Similar to Biostress-resistance-related protein (Fragment).;Transcript_evidence=AK106131 (DDBJ%2C Best hit);ORF_evidence=Q84VJ1 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Phospholipase/carboxylesterase/thioesterase (IPR003140);NIAS_FLcDNA=001-207-F11;TENOR=Os01t0175000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	3850097	3850209	.	-	.	Parent=Os01t0175000-01
Chr01	irgsp1_rep	five_prime_UTR	3849481	3849551	.	-	.	Parent=Os01t0175000-01
Chr01	irgsp1_rep	CDS	3849441	3849480	.	-	0	Parent=Os01t0175000-01
Chr01	irgsp1_rep	CDS	3849155	3849257	.	-	2	Parent=Os01t0175000-01
Chr01	irgsp1_rep	CDS	3848551	3848587	.	-	1	Parent=Os01t0175000-01
Chr01	irgsp1_rep	CDS	3848351	3848420	.	-	0	Parent=Os01t0175000-01
Chr01	irgsp1_rep	CDS	3848113	3848217	.	-	2	Parent=Os01t0175000-01
Chr01	irgsp1_rep	CDS	3847587	3847737	.	-	2	Parent=Os01t0175000-01
Chr01	irgsp1_rep	CDS	3847415	3847497	.	-	1	Parent=Os01t0175000-01
Chr01	irgsp1_rep	CDS	3846803	3846896	.	-	2	Parent=Os01t0175000-01
Chr01	irgsp1_rep	CDS	3846707	3846727	.	-	1	Parent=Os01t0175000-01
Chr01	irgsp1_rep	CDS	3846577	3846595	.	-	1	Parent=Os01t0175000-01
Chr01	irgsp1_rep	three_prime_UTR	3846284	3846576	.	-	.	Parent=Os01t0175000-01
Chr01	irgsp1_rep	mRNA	3846284	3850183	.	-	.	ID=Os01t0175000-02;Name=Os01t0175000-02;Locus_id=Os01g0175000;Note=Similar to Biostress-resistance-related protein (Fragment).;Transcript_evidence=AK061797 (DDBJ%2C Best hit);ORF_evidence=Q84VJ1 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Phospholipase/carboxylesterase/thioesterase (IPR003140);NIAS_FLcDNA=001-039-G08;TENOR=Os01t0175000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	3850097	3850183	.	-	.	Parent=Os01t0175000-02
Chr01	irgsp1_rep	five_prime_UTR	3849481	3849551	.	-	.	Parent=Os01t0175000-02
Chr01	irgsp1_rep	CDS	3849441	3849480	.	-	0	Parent=Os01t0175000-02
Chr01	irgsp1_rep	CDS	3849155	3849257	.	-	2	Parent=Os01t0175000-02
Chr01	irgsp1_rep	CDS	3848551	3848587	.	-	1	Parent=Os01t0175000-02
Chr01	irgsp1_rep	CDS	3848351	3848420	.	-	0	Parent=Os01t0175000-02
Chr01	irgsp1_rep	CDS	3848113	3848217	.	-	2	Parent=Os01t0175000-02
Chr01	irgsp1_rep	CDS	3847587	3847737	.	-	2	Parent=Os01t0175000-02
Chr01	irgsp1_rep	CDS	3847415	3847497	.	-	1	Parent=Os01t0175000-02
Chr01	irgsp1_rep	CDS	3846803	3846896	.	-	2	Parent=Os01t0175000-02
Chr01	irgsp1_rep	CDS	3846637	3846727	.	-	1	Parent=Os01t0175000-02
Chr01	irgsp1_rep	three_prime_UTR	3846284	3846636	.	-	.	Parent=Os01t0175000-02
Chr01	irgsp1_rep	mRNA	3846283	3849904	.	-	.	ID=Os01t0175000-03;Name=Os01t0175000-03;Locus_id=Os01g0175000;Note=Similar to Biostress-resistance-related protein (Fragment).;Transcript_evidence=AK101698 (DDBJ%2C Best hit);ORF_evidence=Q84VJ1 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Phospholipase/carboxylesterase/thioesterase (IPR003140);NIAS_FLcDNA=J033060D21;TENOR=Os01t0175000-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	3849652	3849904	.	-	.	Parent=Os01t0175000-03
Chr01	irgsp1_rep	five_prime_UTR	3849481	3849551	.	-	.	Parent=Os01t0175000-03
Chr01	irgsp1_rep	CDS	3849441	3849480	.	-	0	Parent=Os01t0175000-03
Chr01	irgsp1_rep	CDS	3849155	3849257	.	-	2	Parent=Os01t0175000-03
Chr01	irgsp1_rep	CDS	3848551	3848587	.	-	1	Parent=Os01t0175000-03
Chr01	irgsp1_rep	CDS	3848351	3848420	.	-	0	Parent=Os01t0175000-03
Chr01	irgsp1_rep	CDS	3848113	3848217	.	-	2	Parent=Os01t0175000-03
Chr01	irgsp1_rep	CDS	3847587	3847737	.	-	2	Parent=Os01t0175000-03
Chr01	irgsp1_rep	CDS	3847415	3847497	.	-	1	Parent=Os01t0175000-03
Chr01	irgsp1_rep	CDS	3846803	3846896	.	-	2	Parent=Os01t0175000-03
Chr01	irgsp1_rep	CDS	3846637	3846727	.	-	1	Parent=Os01t0175000-03
Chr01	irgsp1_rep	three_prime_UTR	3846283	3846636	.	-	.	Parent=Os01t0175000-03
Chr01	irgsp1_rep	mRNA	3855147	3856033	.	-	.	ID=Os01t0175100-01;Name=Os01t0175100-01;Locus_id=Os01g0175100;Note=Kv1.4 voltage-gated K+ channel family protein.;Transcript_evidence=AK071289 (DDBJ%2C Best hit);ORF_evidence=A2ZPU2 (UniProt);NIAS_FLcDNA=J023088B10;Expression=AK071289;TENOR=Os01t0175100-01;KEGG=Os01t0175100-01
Chr01	irgsp1_rep	five_prime_UTR	3855925	3856033	.	-	.	Parent=Os01t0175100-01
Chr01	irgsp1_rep	CDS	3855508	3855924	.	-	0	Parent=Os01t0175100-01
Chr01	irgsp1_rep	three_prime_UTR	3855147	3855507	.	-	.	Parent=Os01t0175100-01
Chr01	irgsp1_rep	mRNA	3870734	3874321	.	-	.	ID=Os01t0175400-01;Name=Os01t0175400-01;Locus_id=Os01g0175400;Note=Ankyrin repeat containing protein.;Transcript_evidence=AK102191 (DDBJ%2C Best hit);ORF_evidence=A2ZPU4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J033087A12;Expression=AK102191;TENOR=Os01t0175400-01;KEGG=Os01t0175400-01
Chr01	irgsp1_rep	five_prime_UTR	3874271	3874321	.	-	.	Parent=Os01t0175400-01
Chr01	irgsp1_rep	CDS	3874225	3874270	.	-	0	Parent=Os01t0175400-01
Chr01	irgsp1_rep	CDS	3874067	3874120	.	-	2	Parent=Os01t0175400-01
Chr01	irgsp1_rep	CDS	3873226	3873396	.	-	2	Parent=Os01t0175400-01
Chr01	irgsp1_rep	CDS	3872992	3873123	.	-	2	Parent=Os01t0175400-01
Chr01	irgsp1_rep	CDS	3872520	3872659	.	-	2	Parent=Os01t0175400-01
Chr01	irgsp1_rep	CDS	3871454	3871477	.	-	0	Parent=Os01t0175400-01
Chr01	irgsp1_rep	three_prime_UTR	3870734	3871453	.	-	.	Parent=Os01t0175400-01
Chr01	irgsp1_rep	mRNA	3875771	3877745	.	+	.	ID=Os01t0175500-01;Name=Os01t0175500-01;Locus_id=Os01g0175500;Note=Protein of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK073316 (DDBJ%2C Best hit),AK121275 (DDBJ%2C Best hit);ORF_evidence=A2WL97 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=J033025E12,J023107G08;Expression=AK073316;TENOR=Os01t0175500-01;KEGG=Os01t0175500-01
Chr01	irgsp1_rep	five_prime_UTR	3875771	3875864	.	+	.	Parent=Os01t0175500-01
Chr01	irgsp1_rep	CDS	3875865	3877285	.	+	0	Parent=Os01t0175500-01
Chr01	irgsp1_rep	CDS	3877647	3877662	.	+	1	Parent=Os01t0175500-01
Chr01	irgsp1_rep	three_prime_UTR	3877663	3877745	.	+	.	Parent=Os01t0175500-01
Chr01	irgsp1_rep	mRNA	3878164	3884017	.	-	.	ID=Os01t0175600-01;Name=Os01t0175600-01;Locus_id=Os01g0175600;RAP-DB Gene Symbol Synonym(s)=BOR2%2C OsBOR2%2C OsBOR3;RAP-DB Gene Name Synonym(s)=EFFLUX BORON TRANSPORTER 2%2C Boron transporter 2;CGSNL Gene Symbol=BOR3;CGSNL Gene Name=EFFLUX BORON TRANSPORTER 3;Oryzabase Gene Symbol Synonym(s)=OsBOR3;Oryzabase Gene Name Synonym(s)=Boron transporter 3;Note=Boron (B) transporter;Transcript_evidence=AK072421;ORF_evidence=Q0JQ90;GO=Biological Process: anion transport (GO:0006820),Molecular Function: inorganic anion exchanger activity (GO:0005452),Cellular Component: membrane (GO:0016020),Cellular Component: integral component of membrane (GO:0016021);InterPro=Bicarbonate transporter%2C eukaryotic (IPR003020),Bicarbonate transporter%2C C-terminal (IPR011531);NIAS_FLcDNA=J023086K01;Manual Curation=November 25%2C 2014;Literature_PMID=17675406;Oryzabase=20484;TENOR=Os01t0175600-01;KEGG=Os01t0175600-01
Chr01	irgsp1_rep	five_prime_UTR	3883910	3884017	.	-	.	Parent=Os01t0175600-01
Chr01	irgsp1_rep	five_prime_UTR	3882871	3882901	.	-	.	Parent=Os01t0175600-01
Chr01	irgsp1_rep	CDS	3882767	3882870	.	-	0	Parent=Os01t0175600-01
Chr01	irgsp1_rep	CDS	3882567	3882649	.	-	1	Parent=Os01t0175600-01
Chr01	irgsp1_rep	CDS	3882261	3882453	.	-	2	Parent=Os01t0175600-01
Chr01	irgsp1_rep	CDS	3882040	3882178	.	-	1	Parent=Os01t0175600-01
Chr01	irgsp1_rep	CDS	3881800	3881965	.	-	0	Parent=Os01t0175600-01
Chr01	irgsp1_rep	CDS	3881077	3881243	.	-	2	Parent=Os01t0175600-01
Chr01	irgsp1_rep	CDS	3880775	3880948	.	-	0	Parent=Os01t0175600-01
Chr01	irgsp1_rep	CDS	3880209	3880304	.	-	0	Parent=Os01t0175600-01
Chr01	irgsp1_rep	CDS	3880003	3880119	.	-	0	Parent=Os01t0175600-01
Chr01	irgsp1_rep	CDS	3879385	3879707	.	-	0	Parent=Os01t0175600-01
Chr01	irgsp1_rep	CDS	3878954	3879221	.	-	1	Parent=Os01t0175600-01
Chr01	irgsp1_rep	CDS	3878709	3878837	.	-	0	Parent=Os01t0175600-01
Chr01	irgsp1_rep	CDS	3878337	3878396	.	-	0	Parent=Os01t0175600-01
Chr01	irgsp1_rep	three_prime_UTR	3878164	3878336	.	-	.	Parent=Os01t0175600-01
Chr01	irgsp1_rep	mRNA	3878702	3882875	.	+	.	ID=Os01t0175633-00;Name=Os01t0175633-00;Locus_id=Os01g0175633;Note=Hypothetical protein.;Transcript_evidence=tplb0036c02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0175633-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	3878702	3878839	.	+	.	Parent=Os01t0175633-00
Chr01	irgsp1_rep	five_prime_UTR	3878957	3879229	.	+	.	Parent=Os01t0175633-00
Chr01	irgsp1_rep	five_prime_UTR	3879391	3879507	.	+	.	Parent=Os01t0175633-00
Chr01	irgsp1_rep	CDS	3879508	3879705	.	+	0	Parent=Os01t0175633-00
Chr01	irgsp1_rep	CDS	3879992	3880051	.	+	0	Parent=Os01t0175633-00
Chr01	irgsp1_rep	three_prime_UTR	3880052	3880112	.	+	.	Parent=Os01t0175633-00
Chr01	irgsp1_rep	three_prime_UTR	3880200	3880302	.	+	.	Parent=Os01t0175633-00
Chr01	irgsp1_rep	three_prime_UTR	3880773	3880945	.	+	.	Parent=Os01t0175633-00
Chr01	irgsp1_rep	three_prime_UTR	3881064	3881245	.	+	.	Parent=Os01t0175633-00
Chr01	irgsp1_rep	three_prime_UTR	3881801	3881940	.	+	.	Parent=Os01t0175633-00
Chr01	irgsp1_rep	three_prime_UTR	3882006	3882187	.	+	.	Parent=Os01t0175633-00
Chr01	irgsp1_rep	three_prime_UTR	3882268	3882444	.	+	.	Parent=Os01t0175633-00
Chr01	irgsp1_rep	three_prime_UTR	3882559	3882648	.	+	.	Parent=Os01t0175633-00
Chr01	irgsp1_rep	three_prime_UTR	3882766	3882875	.	+	.	Parent=Os01t0175633-00
Chr01	irgsp1_rep	mRNA	3894296	3898729	.	-	.	ID=Os01t0175700-01;Name=Os01t0175700-01;Locus_id=Os01g0175700;RAP-DB Gene Symbol Synonym(s)=BOR2%2C OsBOR2%2C OsBOR3;RAP-DB Gene Name Synonym(s)=EFFLUX BORON TRANSPORTER 2%2C Boron transporter 2;CGSNL Gene Symbol=BOR2;CGSNL Gene Name=EFFLUX BORON TRANSPORTER 2;Oryzabase Gene Symbol Synonym(s)=OsBOR2;Oryzabase Gene Name Synonym(s)=Boron transporter 2;Note=Boron (B) transporter;Transcript_evidence=DQ421408;ORF_evidence=Q1ZYR7;GO=Biological Process: anion transport (GO:0006820),Molecular Function: inorganic anion exchanger activity (GO:0005452),Cellular Component: membrane (GO:0016020),Cellular Component: integral component of membrane (GO:0016021);InterPro=Bicarbonate transporter%2C eukaryotic (IPR003020),Bicarbonate transporter%2C C-terminal (IPR011531);Manual Curation=November 25%2C 2014;Literature_PMID=17675406;Oryzabase=14353;TENOR=Os01t0175700-00
Chr01	irgsp1_rep	CDS	3898626	3898729	.	-	0	Parent=Os01t0175700-01
Chr01	irgsp1_rep	CDS	3898442	3898524	.	-	1	Parent=Os01t0175700-01
Chr01	irgsp1_rep	CDS	3898135	3898327	.	-	2	Parent=Os01t0175700-01
Chr01	irgsp1_rep	CDS	3897915	3898053	.	-	1	Parent=Os01t0175700-01
Chr01	irgsp1_rep	CDS	3897675	3897840	.	-	0	Parent=Os01t0175700-01
Chr01	irgsp1_rep	CDS	3896902	3897068	.	-	2	Parent=Os01t0175700-01
Chr01	irgsp1_rep	CDS	3896604	3896777	.	-	0	Parent=Os01t0175700-01
Chr01	irgsp1_rep	CDS	3896135	3896230	.	-	0	Parent=Os01t0175700-01
Chr01	irgsp1_rep	CDS	3895929	3896045	.	-	0	Parent=Os01t0175700-01
Chr01	irgsp1_rep	CDS	3895316	3895638	.	-	0	Parent=Os01t0175700-01
Chr01	irgsp1_rep	CDS	3894884	3895151	.	-	1	Parent=Os01t0175700-01
Chr01	irgsp1_rep	CDS	3894639	3894767	.	-	0	Parent=Os01t0175700-01
Chr01	irgsp1_rep	CDS	3894296	3894355	.	-	0	Parent=Os01t0175700-01
Chr01	irgsp1_rep	mRNA	3894637	3898734	.	+	.	ID=Os01t0175733-00;Name=Os01t0175733-00;Locus_id=Os01g0175733;Note=Hypothetical protein.;Transcript_evidence=tplb0036c02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0175733-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	3894637	3894769	.	+	.	Parent=Os01t0175733-00
Chr01	irgsp1_rep	five_prime_UTR	3894887	3895148	.	+	.	Parent=Os01t0175733-00
Chr01	irgsp1_rep	five_prime_UTR	3895314	3895438	.	+	.	Parent=Os01t0175733-00
Chr01	irgsp1_rep	CDS	3895439	3895623	.	+	0	Parent=Os01t0175733-00
Chr01	irgsp1_rep	CDS	3895916	3896038	.	+	1	Parent=Os01t0175733-00
Chr01	irgsp1_rep	CDS	3896126	3896180	.	+	1	Parent=Os01t0175733-00
Chr01	irgsp1_rep	three_prime_UTR	3896181	3896243	.	+	.	Parent=Os01t0175733-00
Chr01	irgsp1_rep	three_prime_UTR	3896616	3896778	.	+	.	Parent=Os01t0175733-00
Chr01	irgsp1_rep	three_prime_UTR	3896903	3897070	.	+	.	Parent=Os01t0175733-00
Chr01	irgsp1_rep	three_prime_UTR	3897676	3897859	.	+	.	Parent=Os01t0175733-00
Chr01	irgsp1_rep	three_prime_UTR	3897933	3898062	.	+	.	Parent=Os01t0175733-00
Chr01	irgsp1_rep	three_prime_UTR	3898142	3898314	.	+	.	Parent=Os01t0175733-00
Chr01	irgsp1_rep	three_prime_UTR	3898430	3898523	.	+	.	Parent=Os01t0175733-00
Chr01	irgsp1_rep	three_prime_UTR	3898625	3898734	.	+	.	Parent=Os01t0175733-00
Chr01	irgsp1_rep	mRNA	3914804	3916283	.	-	.	ID=Os01t0175850-00;Name=Os01t0175850-00;Locus_id=Os01g0175850;Note=UDP-glucuronosyl/UDP-glucosyltransferase domain containing protein.;Transcript_evidence=EU958030 (DDBJ);ORF_evidence=GeneMark;GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os01t0175850-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	3915420	3916283	.	-	0	Parent=Os01t0175850-00
Chr01	irgsp1_rep	three_prime_UTR	3914804	3915419	.	-	.	Parent=Os01t0175850-00
Chr01	irgsp1_rep	mRNA	3917918	3920432	.	+	.	ID=Os01t0176000-01;Name=Os01t0176000-01;Locus_id=Os01g0176000;CGSNL Gene Symbol=UGT98B1;CGSNL Gene Name=UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 98B1;Oryzabase Gene Symbol Synonym(s)=OsUGT98B1;Oryzabase Gene Name Synonym(s)=UDP-glucose-dependent glycosyltransferase 98B1;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK103303 (DDBJ%2C Best hit);ORF_evidence=B2D163 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J033125D02;Oryzabase=21813;Expression=AK103303;TENOR=Os01t0176000-01;KEGG=Os01t0176000-01
Chr01	irgsp1_rep	five_prime_UTR	3917918	3918100	.	+	.	Parent=Os01t0176000-01
Chr01	irgsp1_rep	CDS	3918101	3918603	.	+	0	Parent=Os01t0176000-01
Chr01	irgsp1_rep	CDS	3919312	3920305	.	+	1	Parent=Os01t0176000-01
Chr01	irgsp1_rep	three_prime_UTR	3920306	3920432	.	+	.	Parent=Os01t0176000-01
Chr01	irgsp1_rep	mRNA	3918125	3920244	.	-	.	ID=Os01t0176050-00;Name=Os01t0176050-00;Locus_id=Os01g0176050;Note=Hypothetical protein.;Transcript_evidence=EU964909 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0176050-00
Chr01	irgsp1_rep	five_prime_UTR	3919321	3920244	.	-	.	Parent=Os01t0176050-00
Chr01	irgsp1_rep	CDS	3919302	3919320	.	-	0	Parent=Os01t0176050-00
Chr01	irgsp1_rep	CDS	3918125	3918594	.	-	2	Parent=Os01t0176050-00
Chr01	irgsp1_rep	mRNA	3921356	3923134	.	+	.	ID=Os01t0176100-00;Name=Os01t0176100-00;Locus_id=Os01g0176100;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=C4MF44 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os01t0176100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	3921356	3921867	.	+	0	Parent=Os01t0176100-00
Chr01	irgsp1_rep	CDS	3922141	3923134	.	+	1	Parent=Os01t0176100-00
Chr01	irgsp1_rep	mRNA	3921411	3921821	.	-	.	ID=Os01t0176150-00;Name=Os01t0176150-00;Locus_id=Os01g0176150;Note=Hypothetical protein.;Transcript_evidence=BT035478 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0176150-00
Chr01	irgsp1_rep	five_prime_UTR	3921821	3921821	.	-	.	Parent=Os01t0176150-00
Chr01	irgsp1_rep	CDS	3921411	3921820	.	-	0	Parent=Os01t0176150-00
Chr01	irgsp1_rep	mRNA	3924401	3926257	.	+	.	ID=Os01t0176200-01;Name=Os01t0176200-01;Locus_id=Os01g0176200;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK102335 (DDBJ%2C Best hit);ORF_evidence=C4MF44 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J033091A13;Expression=AK102335;TENOR=Os01t0176200-01;KEGG=Os01t0176200-01
Chr01	irgsp1_rep	five_prime_UTR	3924401	3924432	.	+	.	Parent=Os01t0176200-01
Chr01	irgsp1_rep	CDS	3924433	3924932	.	+	0	Parent=Os01t0176200-01
Chr01	irgsp1_rep	CDS	3925105	3926098	.	+	1	Parent=Os01t0176200-01
Chr01	irgsp1_rep	three_prime_UTR	3926099	3926257	.	+	.	Parent=Os01t0176200-01
Chr01	irgsp1_rep	mRNA	3924427	3926323	.	+	.	ID=Os01t0176200-02;Name=Os01t0176200-02;Locus_id=Os01g0176200;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK064351 (DDBJ%2C Best hit);ORF_evidence=C4MF44 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=002-108-A07;Expression=AK064351;TENOR=Os01t0176200-02;KEGG=Os01t0176200-02
Chr01	irgsp1_rep	five_prime_UTR	3924427	3924432	.	+	.	Parent=Os01t0176200-02
Chr01	irgsp1_rep	CDS	3924433	3924932	.	+	0	Parent=Os01t0176200-02
Chr01	irgsp1_rep	CDS	3925105	3926098	.	+	1	Parent=Os01t0176200-02
Chr01	irgsp1_rep	three_prime_UTR	3926099	3926323	.	+	.	Parent=Os01t0176200-02
Chr01	irgsp1_rep	mRNA	3926661	3929467	.	-	.	ID=Os01t0176300-00;Name=Os01t0176300-00;Locus_id=Os01g0176300;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK249469 (DDBJ);ORF_evidence=NP_001042180.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os01t0176300-00;KEGG=Os01t0176300-00
Chr01	irgsp1_rep	five_prime_UTR	3929448	3929467	.	-	.	Parent=Os01t0176300-00
Chr01	irgsp1_rep	CDS	3927450	3929447	.	-	0	Parent=Os01t0176300-00
Chr01	irgsp1_rep	three_prime_UTR	3927181	3927449	.	-	.	Parent=Os01t0176300-00
Chr01	irgsp1_rep	three_prime_UTR	3926661	3926899	.	-	.	Parent=Os01t0176300-00
Chr01	irgsp1_rep	mRNA	3938234	3939192	.	+	.	ID=Os01t0176400-01;Name=Os01t0176400-01;Locus_id=Os01g0176400;Note=Similar to Photoreceptor-interacting protein-like.;Transcript_evidence=AK111327 (DDBJ%2C Best hit);ORF_evidence=A2ZPV3 (UniProt);NIAS_FLcDNA=002-181-D11;Expression=AK111327;TENOR=Os01t0176400-01;KEGG=Os01t0176400-01
Chr01	irgsp1_rep	five_prime_UTR	3938234	3938235	.	+	.	Parent=Os01t0176400-01
Chr01	irgsp1_rep	CDS	3938236	3938553	.	+	0	Parent=Os01t0176400-01
Chr01	irgsp1_rep	CDS	3938646	3938912	.	+	0	Parent=Os01t0176400-01
Chr01	irgsp1_rep	three_prime_UTR	3938913	3939192	.	+	.	Parent=Os01t0176400-01
Chr01	irgsp1_rep	mRNA	3939133	3942405	.	-	.	ID=Os01t0176500-01;Name=Os01t0176500-01;Locus_id=Os01g0176500;Note=Conserved hypothetical protein.;Transcript_evidence=AK102552 (DDBJ%2C Best hit);ORF_evidence=B9ETF0 (UniProt);NIAS_FLcDNA=J033097C16;Expression=AK102552;TENOR=Os01t0176500-01;KEGG=Os01t0176500-01
Chr01	irgsp1_rep	five_prime_UTR	3942354	3942405	.	-	.	Parent=Os01t0176500-01
Chr01	irgsp1_rep	CDS	3942186	3942353	.	-	0	Parent=Os01t0176500-01
Chr01	irgsp1_rep	CDS	3941866	3942100	.	-	0	Parent=Os01t0176500-01
Chr01	irgsp1_rep	CDS	3941607	3941769	.	-	2	Parent=Os01t0176500-01
Chr01	irgsp1_rep	CDS	3941299	3941516	.	-	1	Parent=Os01t0176500-01
Chr01	irgsp1_rep	CDS	3940828	3941203	.	-	2	Parent=Os01t0176500-01
Chr01	irgsp1_rep	CDS	3939389	3940727	.	-	1	Parent=Os01t0176500-01
Chr01	irgsp1_rep	three_prime_UTR	3939133	3939388	.	-	.	Parent=Os01t0176500-01
Chr01	irgsp1_rep	mRNA	3939133	3940854	.	-	.	ID=Os01t0176500-02;Name=Os01t0176500-02;Locus_id=Os01g0176500;Note=Hypothetical conserved gene.;Transcript_evidence=AK064369 (DDBJ%2C Best hit);ORF_evidence=B9ETF0 (UniProt);NIAS_FLcDNA=002-108-C09;Expression=AK064369;TENOR=Os01t0176500-02;KEGG=Os01t0176500-02
Chr01	irgsp1_rep	five_prime_UTR	3940854	3940854	.	-	.	Parent=Os01t0176500-02
Chr01	irgsp1_rep	CDS	3940828	3940853	.	-	0	Parent=Os01t0176500-02
Chr01	irgsp1_rep	CDS	3939389	3940727	.	-	1	Parent=Os01t0176500-02
Chr01	irgsp1_rep	three_prime_UTR	3939133	3939388	.	-	.	Parent=Os01t0176500-02
Chr01	irgsp1_rep	mRNA	3953043	3955442	.	+	.	ID=Os01t0176700-01;Name=Os01t0176700-01;Locus_id=Os01g0176700;Oryzabase Gene Name Synonym(s)=MYB family transcription factor;Note=Myb-like DNA-binding domain%2C SHAQKYF class domain containing protein.;Transcript_evidence=AK109808 (DDBJ%2C Best hit);ORF_evidence=A2ZPV5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=002-147-G07;Oryzabase=18471;TENOR=Os01t0176700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	3953043	3953044	.	+	.	Parent=Os01t0176700-01
Chr01	irgsp1_rep	CDS	3953045	3953219	.	+	0	Parent=Os01t0176700-01
Chr01	irgsp1_rep	CDS	3953295	3953618	.	+	2	Parent=Os01t0176700-01
Chr01	irgsp1_rep	CDS	3953703	3953984	.	+	2	Parent=Os01t0176700-01
Chr01	irgsp1_rep	CDS	3954115	3954191	.	+	2	Parent=Os01t0176700-01
Chr01	irgsp1_rep	CDS	3954356	3954931	.	+	0	Parent=Os01t0176700-01
Chr01	irgsp1_rep	three_prime_UTR	3954932	3955442	.	+	.	Parent=Os01t0176700-01
Chr01	irgsp1_rep	mRNA	3953070	3954170	.	-	.	ID=Os01t0176751-00;Name=Os01t0176751-00;Locus_id=Os01g0176751;Note=Hypothetical protein.;Transcript_evidence=EU973944 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0176751-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	3954110	3954170	.	-	.	Parent=Os01t0176751-00
Chr01	irgsp1_rep	five_prime_UTR	3953767	3953994	.	-	.	Parent=Os01t0176751-00
Chr01	irgsp1_rep	CDS	3953239	3953766	.	-	0	Parent=Os01t0176751-00
Chr01	irgsp1_rep	three_prime_UTR	3953070	3953238	.	-	.	Parent=Os01t0176751-00
Chr01	irgsp1_rep	mRNA	3958210	3962124	.	+	.	ID=Os01t0176800-01;Name=Os01t0176800-01;Locus_id=Os01g0176800;Note=Protein of unknown function DUF2921 domain containing protein.;Transcript_evidence=AK318595 (DDBJ%2C Best hit);ORF_evidence=NP_001172202.1 (RefSeq);InterPro=Protein of unknown function DUF2921 (IPR021319);NIAS_FLcDNA=J100059B18;TENOR=Os01t0176800-01;KEGG=Os01t0176800-01
Chr01	irgsp1_rep	five_prime_UTR	3958210	3958307	.	+	.	Parent=Os01t0176800-01
Chr01	irgsp1_rep	five_prime_UTR	3958620	3958621	.	+	.	Parent=Os01t0176800-01
Chr01	irgsp1_rep	CDS	3958622	3961903	.	+	0	Parent=Os01t0176800-01
Chr01	irgsp1_rep	three_prime_UTR	3961904	3962124	.	+	.	Parent=Os01t0176800-01
Chr01	irgsp1_rep	mRNA	3958628	3963625	.	-	.	ID=Os01t0176900-00;Name=Os01t0176900-00;Locus_id=Os01g0176900;Note=BZR1%2C transcriptional repressor domain containing protein.;Transcript_evidence=tplb0013b01 (Wheat FLcDNA);ORF_evidence=Q5VRV9 (UniProt);InterPro=BZR1%2C transcriptional repressor (IPR008540);TENOR=Os01t0176900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	3963239	3963625	.	-	0	Parent=Os01t0176900-00
Chr01	irgsp1_rep	CDS	3958628	3959155	.	-	0	Parent=Os01t0176900-00
Chr01	irgsp1_rep	mRNA	3975902	3984752	.	+	.	ID=Os01t0177100-01;Name=Os01t0177100-01;Locus_id=Os01g0177100;Oryzabase Gene Symbol Synonym(s)=OsWD40-4;Note=Similar to STYLOSA protein.;Transcript_evidence=AK072687 (DDBJ%2C Best hit);ORF_evidence=Q6H976 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),LisH dimerisation motif (IPR006594),WD40 repeat-like-containing domain (IPR011046),LisH dimerisation motif%2C subgroup (IPR013720),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J023140I01;Oryzabase=10685;Expression=AK072687;TENOR=Os01t0177100-01;KEGG=Os01t0177100-01
Chr01	irgsp1_rep	five_prime_UTR	3975902	3976499	.	+	.	Parent=Os01t0177100-01
Chr01	irgsp1_rep	CDS	3976500	3976546	.	+	0	Parent=Os01t0177100-01
Chr01	irgsp1_rep	CDS	3977273	3977370	.	+	1	Parent=Os01t0177100-01
Chr01	irgsp1_rep	CDS	3977721	3977830	.	+	2	Parent=Os01t0177100-01
Chr01	irgsp1_rep	CDS	3978524	3978871	.	+	0	Parent=Os01t0177100-01
Chr01	irgsp1_rep	CDS	3978953	3979041	.	+	0	Parent=Os01t0177100-01
Chr01	irgsp1_rep	CDS	3979502	3979589	.	+	1	Parent=Os01t0177100-01
Chr01	irgsp1_rep	CDS	3979659	3979734	.	+	0	Parent=Os01t0177100-01
Chr01	irgsp1_rep	CDS	3979858	3979907	.	+	2	Parent=Os01t0177100-01
Chr01	irgsp1_rep	CDS	3980032	3980340	.	+	0	Parent=Os01t0177100-01
Chr01	irgsp1_rep	CDS	3980803	3980982	.	+	0	Parent=Os01t0177100-01
Chr01	irgsp1_rep	CDS	3981086	3981325	.	+	0	Parent=Os01t0177100-01
Chr01	irgsp1_rep	CDS	3981471	3981582	.	+	0	Parent=Os01t0177100-01
Chr01	irgsp1_rep	CDS	3981931	3982040	.	+	2	Parent=Os01t0177100-01
Chr01	irgsp1_rep	CDS	3982162	3982311	.	+	0	Parent=Os01t0177100-01
Chr01	irgsp1_rep	CDS	3982777	3982932	.	+	0	Parent=Os01t0177100-01
Chr01	irgsp1_rep	CDS	3983289	3983405	.	+	0	Parent=Os01t0177100-01
Chr01	irgsp1_rep	CDS	3983759	3983962	.	+	0	Parent=Os01t0177100-01
Chr01	irgsp1_rep	CDS	3984335	3984478	.	+	0	Parent=Os01t0177100-01
Chr01	irgsp1_rep	three_prime_UTR	3984479	3984752	.	+	.	Parent=Os01t0177100-01
Chr01	irgsp1_rep	mRNA	3976431	3984909	.	+	.	ID=Os01t0177100-02;Name=Os01t0177100-02;Locus_id=Os01g0177100;Oryzabase Gene Symbol Synonym(s)=OsWD40-4;Note=Similar to STYLOSA protein.;Transcript_evidence=AK122062 (DDBJ%2C Best hit);ORF_evidence=Q6H976 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),LisH dimerisation motif (IPR006594),WD40 repeat-like-containing domain (IPR011046),LisH dimerisation motif%2C subgroup (IPR013720),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J033115K06;Oryzabase=10685;Expression=AK122062;TENOR=Os01t0177100-02;KEGG=Os01t0177100-02
Chr01	irgsp1_rep	five_prime_UTR	3976431	3976499	.	+	.	Parent=Os01t0177100-02
Chr01	irgsp1_rep	CDS	3976500	3976546	.	+	0	Parent=Os01t0177100-02
Chr01	irgsp1_rep	CDS	3977273	3977370	.	+	1	Parent=Os01t0177100-02
Chr01	irgsp1_rep	CDS	3977721	3977830	.	+	2	Parent=Os01t0177100-02
Chr01	irgsp1_rep	CDS	3978518	3978871	.	+	0	Parent=Os01t0177100-02
Chr01	irgsp1_rep	CDS	3978953	3979041	.	+	0	Parent=Os01t0177100-02
Chr01	irgsp1_rep	CDS	3979502	3979589	.	+	1	Parent=Os01t0177100-02
Chr01	irgsp1_rep	CDS	3979659	3979734	.	+	0	Parent=Os01t0177100-02
Chr01	irgsp1_rep	CDS	3979858	3979907	.	+	2	Parent=Os01t0177100-02
Chr01	irgsp1_rep	CDS	3980032	3980340	.	+	0	Parent=Os01t0177100-02
Chr01	irgsp1_rep	CDS	3980803	3980982	.	+	0	Parent=Os01t0177100-02
Chr01	irgsp1_rep	CDS	3981086	3981325	.	+	0	Parent=Os01t0177100-02
Chr01	irgsp1_rep	CDS	3981471	3981582	.	+	0	Parent=Os01t0177100-02
Chr01	irgsp1_rep	CDS	3981931	3982040	.	+	2	Parent=Os01t0177100-02
Chr01	irgsp1_rep	CDS	3982162	3982311	.	+	0	Parent=Os01t0177100-02
Chr01	irgsp1_rep	CDS	3982777	3982932	.	+	0	Parent=Os01t0177100-02
Chr01	irgsp1_rep	CDS	3983289	3983405	.	+	0	Parent=Os01t0177100-02
Chr01	irgsp1_rep	CDS	3983759	3983962	.	+	0	Parent=Os01t0177100-02
Chr01	irgsp1_rep	CDS	3984335	3984478	.	+	0	Parent=Os01t0177100-02
Chr01	irgsp1_rep	three_prime_UTR	3984479	3984909	.	+	.	Parent=Os01t0177100-02
Chr01	irgsp1_rep	mRNA	3980433	3983134	.	-	.	ID=Os01t0177150-01;Name=Os01t0177150-01;Locus_id=Os01g0177150;Note=Non-protein coding transcript.;Transcript_evidence=AK288777 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090068L10;TENOR=Os01t0177150-01
Chr01	irgsp1_rep	exon	3980433	3983134	.	-	.	Parent=Os01t0177150-01
Chr01	irgsp1_rep	mRNA	3986647	3995398	.	+	.	ID=Os01t0177200-01;Name=Os01t0177200-01;Locus_id=Os01g0177200;CGSNL Gene Symbol=UBP6;CGSNL Gene Name=UBIQUITIN-SPECIFIC PROCESSING PROTEASE 6;Oryzabase Gene Symbol Synonym(s)=OsUBP6%2C OsUBP14%2C UBP14;Oryzabase Gene Name Synonym(s)=ubiquitin-specific processing protease 6%2C Ubiquitin-specific protease 14;Note=Similar to Ubiquitin-specific protease 14.;Transcript_evidence=AK103230 (DDBJ%2C Best hit);ORF_evidence=B8ADJ1 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Molecular Function: ubiquitin thiolesterase activity (GO:0004221),Molecular Function: protein binding (GO:0005515),Molecular Function: omega peptidase activity (GO:0008242),Molecular Function: zinc ion binding (GO:0008270);InterPro=Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal (IPR000449),Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (IPR001394),Zinc finger%2C UBP-type (IPR001607),UBA-like (IPR009060),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (IPR015940),Ubiquitinyl hydrolase (IPR016652),Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2%2C conserved site (IPR018200);NIAS_FLcDNA=J033123D13;Oryzabase=22885;Expression=AK103230;TENOR=Os01t0177200-01;KEGG=Os01t0177200-01 (EC:3.1.2.15)
Chr01	irgsp1_rep	five_prime_UTR	3986647	3986770	.	+	.	Parent=Os01t0177200-01
Chr01	irgsp1_rep	CDS	3986771	3986866	.	+	0	Parent=Os01t0177200-01
Chr01	irgsp1_rep	CDS	3986965	3987145	.	+	0	Parent=Os01t0177200-01
Chr01	irgsp1_rep	CDS	3987668	3987780	.	+	2	Parent=Os01t0177200-01
Chr01	irgsp1_rep	CDS	3987854	3988190	.	+	0	Parent=Os01t0177200-01
Chr01	irgsp1_rep	CDS	3989022	3989116	.	+	2	Parent=Os01t0177200-01
Chr01	irgsp1_rep	CDS	3989330	3989463	.	+	0	Parent=Os01t0177200-01
Chr01	irgsp1_rep	CDS	3989548	3989604	.	+	1	Parent=Os01t0177200-01
Chr01	irgsp1_rep	CDS	3989711	3989788	.	+	1	Parent=Os01t0177200-01
Chr01	irgsp1_rep	CDS	3990333	3990387	.	+	1	Parent=Os01t0177200-01
Chr01	irgsp1_rep	CDS	3991159	3991239	.	+	0	Parent=Os01t0177200-01
Chr01	irgsp1_rep	CDS	3991369	3991567	.	+	0	Parent=Os01t0177200-01
Chr01	irgsp1_rep	CDS	3991642	3991699	.	+	2	Parent=Os01t0177200-01
Chr01	irgsp1_rep	CDS	3991770	3991892	.	+	1	Parent=Os01t0177200-01
Chr01	irgsp1_rep	CDS	3992440	3992528	.	+	1	Parent=Os01t0177200-01
Chr01	irgsp1_rep	CDS	3993450	3993539	.	+	2	Parent=Os01t0177200-01
Chr01	irgsp1_rep	CDS	3993619	3993792	.	+	2	Parent=Os01t0177200-01
Chr01	irgsp1_rep	CDS	3993911	3994035	.	+	2	Parent=Os01t0177200-01
Chr01	irgsp1_rep	CDS	3994246	3994372	.	+	0	Parent=Os01t0177200-01
Chr01	irgsp1_rep	CDS	3994826	3994998	.	+	2	Parent=Os01t0177200-01
Chr01	irgsp1_rep	three_prime_UTR	3994999	3995398	.	+	.	Parent=Os01t0177200-01
Chr01	irgsp1_rep	mRNA	4003659	4004887	.	-	.	ID=Os01t0177400-01;Name=Os01t0177400-01;Locus_id=Os01g0177400;RAP-DB Gene Symbol Synonym(s)=D18%2C d18-h  (d18-I%2C d18h)%2C dwf15%2C d25%2C d18%2C d18-k%2C d18-AD%2C d18-dy%2C OsGA3ox2%2C ga3ox2%2C OsGA3OX2%2C GA3OX2%2C GA3ox-2;RAP-DB Gene Name Synonym(s)=DWARF 18%2C hosetsu-waisei(d18-h)%2C Akibare waisei(d18-AD)%2C Waito-D(d18-dy)%2C Kotaketamanishiki(d18-k)%2C GA 3beta-hydroxylase2%2C GA 3beta-hydroxylase 2%2C GA 3-oxidase 2%2C Gibberellin(GA)-3 beta-hydroxylase-2;CGSNL Gene Symbol=D18;CGSNL Gene Name=DWARF 18;Oryzabase Gene Symbol Synonym(s)=d18-h  (d18-I%2C d18h)%2C dwf15%2C d25%2C d18%2C d18-k%2C d18-AD%2C d18-dy%2C OsGA3ox2%2C ga3ox2%2C OsGA3OX2%2C GA3OX2%2C OsGA3ox-2%2C GA3ox-2%2C GA3ox1;Oryzabase Gene Name Synonym(s)=hosetsu-waisei(d18-h)%2C Akibare waisei(d18-AD)%2C Waito-D(d18-dy)%2C Kotaketamanishiki(d18-k)%2C GA 3beta-hydroxylase2%2C GA 3beta-hydroxylase 2%2C GA 3-oxidase 2%2C Gibberellin(GA)-3 beta-hydroxylase-2;Note=GA 3 beta-hydroxylase2%2C GA metabolism;Transcript_evidence=AB056519 (Genbank),AB056517 (Genbank),AB056518 (Genbank);ORF_evidence=Q9FU53 (UniProt),Q94ID5 (UniProt),Q94ID4 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);Manual Curation=May 11%2C 2009;Literature_PMID=11438692,15075394;Oryzabase=421;Expression=AB056518;TENOR=Os01t0177400-01;KEGG=Os01t0177400-01
Chr01	irgsp1_rep	CDS	4004707	4004887	.	-	0	Parent=Os01t0177400-01
Chr01	irgsp1_rep	CDS	4004415	4004697	.	-	2	Parent=Os01t0177400-01
Chr01	irgsp1_rep	CDS	4003659	4004307	.	-	1	Parent=Os01t0177400-01
Chr01	irgsp1_rep	mRNA	4003779	4004759	.	+	.	ID=Os01t0177500-00;Name=Os01t0177500-00;Locus_id=Os01g0177500;Note=Hypothetical protein.;Transcript_evidence=AK376085 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0177500-00
Chr01	irgsp1_rep	CDS	4003779	4004270	.	+	0	Parent=Os01t0177500-00
Chr01	irgsp1_rep	three_prime_UTR	4004271	4004311	.	+	.	Parent=Os01t0177500-00
Chr01	irgsp1_rep	three_prime_UTR	4004451	4004759	.	+	.	Parent=Os01t0177500-00
Chr01	irgsp1_rep	mRNA	4033949	4043431	.	-	.	ID=Os01t0177900-01;Name=Os01t0177900-01;Locus_id=Os01g0177900;RAP-DB Gene Symbol Synonym(s)=PDR6%2C OsPDR6%2C OsABCG31%2C OsABCG31_1;RAP-DB Gene Name Synonym(s)=PLEIOTROPIC DRUG RESISTANCE 6%2C sativa pleiotropic drug resistance 6%2C Pleiotropic drug resistance protein 6%2C ABC transporter superfamily ABCG subgroup member 31;CGSNL Gene Symbol=PDR6;CGSNL Gene Name=PLEIOTROPIC DRUG RESISTANCE 6;Oryzabase Gene Symbol Synonym(s)=OsPDR6%2C OsABCG31%2C OsABCG31_1;Oryzabase Gene Name Synonym(s)=sativa pleiotropic drug resistance 6%2C Pleiotropic drug resistance protein 6%2C ABC transporter superfamily ABCG subgroup member 31%2C ATP-binding Cassette Transporter G31;Note=ATP-binding cassette transporter%2C Cuticle formation%2C Defense response;Transcript_evidence=AJ535049;ORF_evidence=Q8GU87;GO=Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Cellular Component: membrane (GO:0016020);InterPro=ABC-transporter extracellular N-terminal domain (IPR029481),ABC transporter-like (IPR003439),P-loop containing nucleoside triphosphate hydrolase (IPR027417),AAA+ ATPase domain (IPR003593),ABC-2 type transporter (IPR013525),Plant PDR ABC transporter associated (IPR013581);Manual Curation=June 20%2C 2016;Literature_PMID=27121976,12644668;Oryzabase=8339;TENOR=Os01t0177900-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	4043136	4043431	.	-	0	Parent=Os01t0177900-01
Chr01	irgsp1_rep	CDS	4042474	4042594	.	-	1	Parent=Os01t0177900-01
Chr01	irgsp1_rep	CDS	4042178	4042266	.	-	0	Parent=Os01t0177900-01
Chr01	irgsp1_rep	CDS	4042008	4042092	.	-	1	Parent=Os01t0177900-01
Chr01	irgsp1_rep	CDS	4041525	4041684	.	-	0	Parent=Os01t0177900-01
Chr01	irgsp1_rep	CDS	4041367	4041443	.	-	2	Parent=Os01t0177900-01
Chr01	irgsp1_rep	CDS	4041220	4041280	.	-	0	Parent=Os01t0177900-01
Chr01	irgsp1_rep	CDS	4040453	4040536	.	-	2	Parent=Os01t0177900-01
Chr01	irgsp1_rep	CDS	4040020	4040321	.	-	2	Parent=Os01t0177900-01
Chr01	irgsp1_rep	CDS	4039655	4039936	.	-	0	Parent=Os01t0177900-01
Chr01	irgsp1_rep	CDS	4038636	4038952	.	-	0	Parent=Os01t0177900-01
Chr01	irgsp1_rep	CDS	4038383	4038543	.	-	1	Parent=Os01t0177900-01
Chr01	irgsp1_rep	CDS	4038176	4038279	.	-	2	Parent=Os01t0177900-01
Chr01	irgsp1_rep	CDS	4037778	4037934	.	-	0	Parent=Os01t0177900-01
Chr01	irgsp1_rep	CDS	4037570	4037689	.	-	2	Parent=Os01t0177900-01
Chr01	irgsp1_rep	CDS	4037391	4037485	.	-	2	Parent=Os01t0177900-01
Chr01	irgsp1_rep	CDS	4036971	4037303	.	-	0	Parent=Os01t0177900-01
Chr01	irgsp1_rep	CDS	4036591	4036881	.	-	0	Parent=Os01t0177900-01
Chr01	irgsp1_rep	CDS	4036168	4036251	.	-	0	Parent=Os01t0177900-01
Chr01	irgsp1_rep	CDS	4035922	4036055	.	-	0	Parent=Os01t0177900-01
Chr01	irgsp1_rep	CDS	4035616	4035843	.	-	1	Parent=Os01t0177900-01
Chr01	irgsp1_rep	CDS	4035362	4035533	.	-	1	Parent=Os01t0177900-01
Chr01	irgsp1_rep	CDS	4035007	4035261	.	-	0	Parent=Os01t0177900-01
Chr01	irgsp1_rep	CDS	4034077	4034349	.	-	0	Parent=Os01t0177900-01
Chr01	irgsp1_rep	three_prime_UTR	4033949	4034076	.	-	.	Parent=Os01t0177900-01
Chr01	irgsp1_rep	mRNA	4033754	4036223	.	-	.	ID=Os01t0177900-02;Name=Os01t0177900-02;Locus_id=Os01g0177900;CGSNL Gene Symbol=PDR6;CGSNL Gene Name=PLEIOTROPIC DRUG RESISTANCE 6;Oryzabase Gene Symbol Synonym(s)=OsPDR6%2C OsABCG31%2C OsABCG31_1;Oryzabase Gene Name Synonym(s)=sativa pleiotropic drug resistance 6%2C Pleiotropic drug resistance protein 6%2C ABC transporter superfamily ABCG subgroup member 31%2C ATP-binding Cassette Transporter G31;Note=Similar to Pleiotropic drug resistance protein 6.;Transcript_evidence=AK058355 (DDBJ%2C Best hit);ORF_evidence=B9ETF6 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=ABC-2 type transporter (IPR013525);NIAS_FLcDNA=001-014-E11;Oryzabase=8339;Expression=AK058355;TENOR=Os01t0177900-02;KEGG=Os01t0177900-02
Chr01	irgsp1_rep	five_prime_UTR	4036168	4036223	.	-	.	Parent=Os01t0177900-02
Chr01	irgsp1_rep	five_prime_UTR	4035891	4036055	.	-	.	Parent=Os01t0177900-02
Chr01	irgsp1_rep	CDS	4035616	4035890	.	-	0	Parent=Os01t0177900-02
Chr01	irgsp1_rep	CDS	4035362	4035533	.	-	1	Parent=Os01t0177900-02
Chr01	irgsp1_rep	CDS	4035007	4035261	.	-	0	Parent=Os01t0177900-02
Chr01	irgsp1_rep	CDS	4034077	4034349	.	-	0	Parent=Os01t0177900-02
Chr01	irgsp1_rep	three_prime_UTR	4033754	4034076	.	-	.	Parent=Os01t0177900-02
Chr01	irgsp1_rep	mRNA	4051885	4057571	.	-	.	ID=Os01t0178000-01;Name=Os01t0178000-01;Locus_id=Os01g0178000;Note=Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 domain containing protein.;Transcript_evidence=AK067702 (DDBJ%2C Best hit);ORF_evidence=B6TMW7 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferases%2C class-I%2C pyridoxal-phosphate-binding site (IPR004838),Aminotransferase%2C class I/classII (IPR004839),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J013119N03;Expression=AK067702;TENOR=Os01t0178000-01;KEGG=Os01t0178000-01
Chr01	irgsp1_rep	five_prime_UTR	4057442	4057571	.	-	.	Parent=Os01t0178000-01
Chr01	irgsp1_rep	five_prime_UTR	4057248	4057292	.	-	.	Parent=Os01t0178000-01
Chr01	irgsp1_rep	CDS	4057185	4057247	.	-	0	Parent=Os01t0178000-01
Chr01	irgsp1_rep	CDS	4057027	4057074	.	-	0	Parent=Os01t0178000-01
Chr01	irgsp1_rep	CDS	4056396	4056524	.	-	0	Parent=Os01t0178000-01
Chr01	irgsp1_rep	CDS	4055110	4055169	.	-	0	Parent=Os01t0178000-01
Chr01	irgsp1_rep	CDS	4054711	4054867	.	-	0	Parent=Os01t0178000-01
Chr01	irgsp1_rep	CDS	4054339	4054445	.	-	2	Parent=Os01t0178000-01
Chr01	irgsp1_rep	CDS	4054194	4054252	.	-	0	Parent=Os01t0178000-01
Chr01	irgsp1_rep	CDS	4052967	4053075	.	-	1	Parent=Os01t0178000-01
Chr01	irgsp1_rep	CDS	4052257	4052709	.	-	0	Parent=Os01t0178000-01
Chr01	irgsp1_rep	three_prime_UTR	4051885	4052256	.	-	.	Parent=Os01t0178000-01
Chr01	irgsp1_rep	mRNA	4051898	4054218	.	-	.	ID=Os01t0178000-02;Name=Os01t0178000-02;Locus_id=Os01g0178000;Note=Similar to Transaminase/ transferase%2C transferring nitrogenous groups.;Transcript_evidence=AK120458 (DDBJ%2C Best hit);ORF_evidence=B6TMW7 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferases%2C class-I%2C pyridoxal-phosphate-binding site (IPR004838),Aminotransferase%2C class I/classII (IPR004839),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J013105O22;Expression=AK120458;TENOR=Os01t0178000-02;KEGG=Os01t0178000-02
Chr01	irgsp1_rep	five_prime_UTR	4053108	4054218	.	-	.	Parent=Os01t0178000-02
Chr01	irgsp1_rep	CDS	4052967	4053107	.	-	0	Parent=Os01t0178000-02
Chr01	irgsp1_rep	CDS	4052257	4052709	.	-	0	Parent=Os01t0178000-02
Chr01	irgsp1_rep	three_prime_UTR	4051898	4052256	.	-	.	Parent=Os01t0178000-02
Chr01	irgsp1_rep	mRNA	4059510	4063188	.	+	.	ID=Os01t0178100-01;Name=Os01t0178100-01;Locus_id=Os01g0178100;Note=Region of unknown function DUF1767 domain containing protein.;Transcript_evidence=AK122048 (DDBJ%2C Best hit);ORF_evidence=B8ADJ5 (UniProt);InterPro=Domain of unknown function DUF1767 (IPR013894);NIAS_FLcDNA=J033114C24;Expression=AK122048;TENOR=Os01t0178100-01;KEGG=Os01t0178100-01
Chr01	irgsp1_rep	five_prime_UTR	4059510	4059599	.	+	.	Parent=Os01t0178100-01
Chr01	irgsp1_rep	CDS	4059600	4059878	.	+	0	Parent=Os01t0178100-01
Chr01	irgsp1_rep	CDS	4060485	4060652	.	+	0	Parent=Os01t0178100-01
Chr01	irgsp1_rep	CDS	4061306	4061552	.	+	0	Parent=Os01t0178100-01
Chr01	irgsp1_rep	CDS	4062129	4062275	.	+	2	Parent=Os01t0178100-01
Chr01	irgsp1_rep	CDS	4062355	4062626	.	+	2	Parent=Os01t0178100-01
Chr01	irgsp1_rep	CDS	4062727	4062888	.	+	0	Parent=Os01t0178100-01
Chr01	irgsp1_rep	three_prime_UTR	4062889	4063188	.	+	.	Parent=Os01t0178100-01
Chr01	irgsp1_rep	mRNA	4064068	4066014	.	+	.	ID=Os01t0178200-00;Name=Os01t0178200-00;Locus_id=Os01g0178200;Note=Similar to integral membrane family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_568386.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Protein of unknown function DUF92%2C TMEM19 (IPR002794);TENOR=Os01t0178200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	4064068	4064234	.	+	0	Parent=Os01t0178200-00
Chr01	irgsp1_rep	CDS	4064334	4064447	.	+	1	Parent=Os01t0178200-00
Chr01	irgsp1_rep	CDS	4064614	4064707	.	+	1	Parent=Os01t0178200-00
Chr01	irgsp1_rep	CDS	4065195	4065440	.	+	0	Parent=Os01t0178200-00
Chr01	irgsp1_rep	CDS	4065526	4065774	.	+	0	Parent=Os01t0178200-00
Chr01	irgsp1_rep	CDS	4065883	4066014	.	+	0	Parent=Os01t0178200-00
Chr01	irgsp1_rep	mRNA	4066347	4067319	.	-	.	ID=Os01t0178300-01;Name=Os01t0178300-01;Locus_id=Os01g0178300;RAP-DB Gene Symbol Synonym(s)=CDT3%2C OsCDT3;RAP-DB Gene Name Synonym(s)=CADMIUM TOLERANT 3%2C sativa DcCDT1 homologue 3%2C cadmium tolerance 3;CGSNL Gene Symbol=CDT3;CGSNL Gene Name=CADMIUM TOLERANT 3;Oryzabase Gene Symbol Synonym(s)=OsCDT3;Oryzabase Gene Name Synonym(s)=sativa DcCDT1 homologue 3%2C cadmium tolerance 3;Note=Plasma membrane-localized small peptide%2C Aluminum tolerance;Transcript_evidence=AB787528;ORF_evidence=Q5VRD7;InterPro=Cysteine-rich transmembrane CYSTM domain (IPR028144);Manual Curation=November 25%2C 2013;Literature_PMID=23888867;Oryzabase=8300;TENOR=Os01t0178300-01
Chr01	irgsp1_rep	five_prime_UTR	4067219	4067319	.	-	.	Parent=Os01t0178300-01
Chr01	irgsp1_rep	CDS	4067133	4067218	.	-	0	Parent=Os01t0178300-01
Chr01	irgsp1_rep	CDS	4066623	4066698	.	-	1	Parent=Os01t0178300-01
Chr01	irgsp1_rep	three_prime_UTR	4066347	4066622	.	-	.	Parent=Os01t0178300-01
Chr01	irgsp1_rep	mRNA	4068636	4070331	.	-	.	ID=Os01t0178400-01;Name=Os01t0178400-01;Locus_id=Os01g0178400;Note=Similar to Protein phosphatase 2A B'kappa subunit.;Transcript_evidence=AK108850 (DDBJ%2C Best hit);ORF_evidence=XP_002885457.1 (RefSeq);GO=Biological Process: signal transduction (GO:0007165),Cellular Component: protein phosphatase type 2A complex (GO:0000159),Molecular Function: binding (GO:0005488),Molecular Function: protein phosphatase type 2A regulator activity (GO:0008601);InterPro=Protein phosphatase 2A%2C regulatory B subunit%2C B56 (IPR002554),Armadillo-type fold (IPR016024);NIAS_FLcDNA=002-152-A06;Expression=AK108850;TENOR=Os01t0178400-01;KEGG=Os01t0178400-01
Chr01	irgsp1_rep	CDS	4070101	4070331	.	-	0	Parent=Os01t0178400-01
Chr01	irgsp1_rep	CDS	4068863	4069249	.	-	0	Parent=Os01t0178400-01
Chr01	irgsp1_rep	three_prime_UTR	4068636	4068862	.	-	.	Parent=Os01t0178400-01
Chr01	irgsp1_rep	mRNA	4073916	4076438	.	-	.	ID=Os01t0178500-02;Name=Os01t0178500-02;Locus_id=Os01g0178500;RAP-DB Gene Symbol Synonym(s)=OsIAA1;RAP-DB Gene Name Synonym(s)=Aux/IAA protein 1%2C Oryza sativa indoleacetic acid 1;CGSNL Gene Symbol=IAA1;Oryzabase Gene Symbol Synonym(s)=OsIAA1%2C OsIAA4;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 1;Note=A member of rice Aux/IAA family%2C Cross-talk of auxin and brassinosteroid signaling pathways%2C Plant morphogenesis;Transcript_evidence=AK109373,AK060091,AK069242,AK100800;ORF_evidence=Q5VRD1;GO=Molecular Function: protein binding (GO:0005515);InterPro=PB1 domain (IPR000270),AUX/IAA domain (IPR033389);NIAS_FLcDNA=006-208-G03,006-307-D01,J023010B20,J023121G17;Manual Curation=December 12%2C 2017;Literature_PMID=19266169,16200395;Oryzabase=10893;TENOR=Os01t0178500-02;Subcellular location=nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	4076318	4076438	.	-	.	Parent=Os01t0178500-02
Chr01	irgsp1_rep	CDS	4076097	4076317	.	-	0	Parent=Os01t0178500-02
Chr01	irgsp1_rep	CDS	4075819	4076000	.	-	1	Parent=Os01t0178500-02
Chr01	irgsp1_rep	CDS	4075624	4075738	.	-	2	Parent=Os01t0178500-02
Chr01	irgsp1_rep	CDS	4074450	4074511	.	-	1	Parent=Os01t0178500-02
Chr01	irgsp1_rep	CDS	4074313	4074332	.	-	2	Parent=Os01t0178500-02
Chr01	irgsp1_rep	three_prime_UTR	4073916	4074312	.	-	.	Parent=Os01t0178500-02
Chr01	irgsp1_rep	mRNA	4081316	4082680	.	+	.	ID=Os01t0178600-01;Name=Os01t0178600-01;Locus_id=Os01g0178600;RAP-DB Gene Symbol Synonym(s)=OsCDR1;RAP-DB Gene Name Synonym(s)=constitutive disease resistance 1;Oryzabase Gene Symbol Synonym(s)=OsCDR1;Oryzabase Gene Name Synonym(s)=CONSTITUTIVE DISEASE RESISTANCE 1;Note=Aspartate protease%2C Disease resistance;Transcript_evidence=Inferred from literature;ORF_evidence=Q5VRD5;GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Aspartic peptidase domain superfamily (IPR021109),Aspartic peptidase A1 family (IPR001461),Xylanase inhibitor%2C N-terminal (IPR032861),Peptidase family A1 domain (IPR033121),Pepsin-like domain%2C plant (IPR034161),Xylanase inhibitor%2C C-terminal (IPR032799);Manual Curation=October 5%2C 2020;Literature_PMID=20347986,19888828;Oryzabase=13345;TENOR=Os01t0178600-00
Chr01	irgsp1_rep	CDS	4081316	4082680	.	+	0	Parent=Os01t0178600-01
Chr01	irgsp1_rep	mRNA	4091073	4094814	.	+	.	ID=Os01t0178700-01;Name=Os01t0178700-01;Locus_id=Os01g0178700;Oryzabase Gene Symbol Synonym(s)=OsSTA5;Note=Similar to Protein binding protein.;Transcript_evidence=AK103147 (DDBJ%2C Best hit);ORF_evidence=B6TV66 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J033120I17;Oryzabase=19322;TENOR=Os01t0178700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	4091073	4091167	.	+	.	Parent=Os01t0178700-01
Chr01	irgsp1_rep	five_prime_UTR	4091501	4091570	.	+	.	Parent=Os01t0178700-01
Chr01	irgsp1_rep	five_prime_UTR	4092287	4092383	.	+	.	Parent=Os01t0178700-01
Chr01	irgsp1_rep	CDS	4092384	4093030	.	+	0	Parent=Os01t0178700-01
Chr01	irgsp1_rep	CDS	4093408	4093533	.	+	1	Parent=Os01t0178700-01
Chr01	irgsp1_rep	CDS	4093619	4093895	.	+	1	Parent=Os01t0178700-01
Chr01	irgsp1_rep	CDS	4094021	4094251	.	+	0	Parent=Os01t0178700-01
Chr01	irgsp1_rep	three_prime_UTR	4094252	4094814	.	+	.	Parent=Os01t0178700-01
Chr01	irgsp1_rep	mRNA	4092625	4094164	.	-	.	ID=Os01t0178775-00;Name=Os01t0178775-00;Locus_id=Os01g0178775;Note=Non-protein coding transcript.;Transcript_evidence=tplb0030e06 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os01t0178775-00
Chr01	irgsp1_rep	exon	4093996	4094164	.	-	.	Parent=Os01t0178775-00
Chr01	irgsp1_rep	exon	4093582	4093875	.	-	.	Parent=Os01t0178775-00
Chr01	irgsp1_rep	exon	4093415	4093507	.	-	.	Parent=Os01t0178775-00
Chr01	irgsp1_rep	exon	4092625	4093040	.	-	.	Parent=Os01t0178775-00
Chr01	irgsp1_rep	mRNA	4099317	4099593	.	+	.	ID=Os01t0178850-00;Name=Os01t0178850-00;Locus_id=Os01g0178850;Note=Similar to predicted protein.;Transcript_evidence=EU947798 (DDBJ);ORF_evidence=XP_002488962.1 (RefSeq);InterPro=DVL (IPR012552);TENOR=Os01t0178850-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	4099317	4099556	.	+	0	Parent=Os01t0178850-00
Chr01	irgsp1_rep	three_prime_UTR	4099557	4099593	.	+	.	Parent=Os01t0178850-00
Chr01	irgsp1_rep	mRNA	4106828	4108508	.	+	.	ID=Os01t0178900-01;Name=Os01t0178900-01;Locus_id=Os01g0178900;Note=Similar to Symbiosis-related disease resistance protein (Fragment).;Transcript_evidence=AK110770 (DDBJ%2C Best hit);ORF_evidence=Q8RVG6 (UniProt);NIAS_FLcDNA=002-171-A10;Expression=AK110770;TENOR=Os01t0178900-01;KEGG=Os01t0178900-01
Chr01	irgsp1_rep	five_prime_UTR	4106828	4106828	.	+	.	Parent=Os01t0178900-01
Chr01	irgsp1_rep	CDS	4106829	4108409	.	+	0	Parent=Os01t0178900-01
Chr01	irgsp1_rep	three_prime_UTR	4108410	4108508	.	+	.	Parent=Os01t0178900-01
Chr01	irgsp1_rep	mRNA	4110402	4112126	.	-	.	ID=Os01t0179000-01;Name=Os01t0179000-01;Locus_id=Os01g0179000;CGSNL Gene Symbol=AT6;CGSNL Gene Name=ACYLTRANSFERASE 6;Oryzabase Gene Symbol Synonym(s)=OsAT6%2C OsAt6;Oryzabase Gene Name Synonym(s)=acyltransferase 6;Note=Transferase family protein.;Transcript_evidence=AK288049 (DDBJ%2C Best hit);ORF_evidence=B6TZV1 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J075151E20;Oryzabase=11738;TENOR=Os01t0179000-01;KEGG=Os01t0179000-01
Chr01	irgsp1_rep	five_prime_UTR	4112004	4112126	.	-	.	Parent=Os01t0179000-01
Chr01	irgsp1_rep	CDS	4110690	4112003	.	-	0	Parent=Os01t0179000-01
Chr01	irgsp1_rep	three_prime_UTR	4110402	4110689	.	-	.	Parent=Os01t0179000-01
Chr01	irgsp1_rep	mRNA	4118041	4122224	.	+	.	ID=Os01t0179200-01;Name=Os01t0179200-01;Locus_id=Os01g0179200;Note=Syntaxin%2C N-terminal domain containing protein.;Transcript_evidence=AK106425 (DDBJ%2C Best hit);ORF_evidence=NP_001149760.1 (RefSeq);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: membrane (GO:0016020),Molecular Function: SNAP receptor activity (GO:0005484),Molecular Function: protein binding (GO:0005515);InterPro=Target SNARE coiled-coil domain (IPR000727),Syntaxin%2C N-terminal (IPR006011),Syntaxin/epimorphin%2C conserved site (IPR006012),t-SNARE (IPR010989);NIAS_FLcDNA=002-103-B08;Expression=AK106425;TENOR=Os01t0179200-01;KEGG=Os01t0179200-01
Chr01	irgsp1_rep	five_prime_UTR	4118041	4118202	.	+	.	Parent=Os01t0179200-01
Chr01	irgsp1_rep	CDS	4118203	4118458	.	+	0	Parent=Os01t0179200-01
Chr01	irgsp1_rep	CDS	4120359	4120609	.	+	2	Parent=Os01t0179200-01
Chr01	irgsp1_rep	CDS	4120691	4120860	.	+	0	Parent=Os01t0179200-01
Chr01	irgsp1_rep	CDS	4121188	4121385	.	+	1	Parent=Os01t0179200-01
Chr01	irgsp1_rep	CDS	4121922	4122081	.	+	1	Parent=Os01t0179200-01
Chr01	irgsp1_rep	three_prime_UTR	4122082	4122224	.	+	.	Parent=Os01t0179200-01
Chr01	irgsp1_rep	mRNA	4123420	4126215	.	+	.	ID=Os01t0179300-01;Name=Os01t0179300-01;Locus_id=Os01g0179300;Oryzabase Gene Symbol Synonym(s)=BIP128;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 128%2C BRI1-interacting protein 128%2C brassinosteroid receptor kinase-interacting protein 128;Note=Similar to BRI1-KD interacting protein 128 (Fragment).;Transcript_evidence=AK066179 (DDBJ%2C Best hit);ORF_evidence=Q761Y6 (UniProt);NIAS_FLcDNA=J013057C04;Oryzabase=13703;Expression=AK066179;TENOR=Os01t0179300-01;KEGG=Os01t0179300-01
Chr01	irgsp1_rep	five_prime_UTR	4123420	4123750	.	+	.	Parent=Os01t0179300-01
Chr01	irgsp1_rep	CDS	4123751	4124140	.	+	0	Parent=Os01t0179300-01
Chr01	irgsp1_rep	CDS	4125226	4125484	.	+	0	Parent=Os01t0179300-01
Chr01	irgsp1_rep	CDS	4125639	4125985	.	+	2	Parent=Os01t0179300-01
Chr01	irgsp1_rep	three_prime_UTR	4125986	4126215	.	+	.	Parent=Os01t0179300-01
Chr01	irgsp1_rep	mRNA	4125815	4126215	.	+	.	ID=Os01t0179300-02;Name=Os01t0179300-02;Locus_id=Os01g0179300;Oryzabase Gene Symbol Synonym(s)=BIP128;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 128%2C BRI1-interacting protein 128%2C brassinosteroid receptor kinase-interacting protein 128;Note=Non-protein coding transcript.;Transcript_evidence=AK062062 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-044-D01;Oryzabase=13703;TENOR=Os01t0179300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	exon	4125815	4126215	.	+	.	Parent=Os01t0179300-02
Chr01	irgsp1_rep	mRNA	4127232	4140631	.	+	.	ID=Os01t0179400-01;Name=Os01t0179400-01;Locus_id=Os01g0179400;RAP-DB Gene Symbol Synonym(s)=SSG4;RAP-DB Gene Name Synonym(s)=SUBSTANDARD STARCH GRAIN4%2C substandard starch grain4%2C substandard starch grain 4;CGSNL Gene Symbol=SSG4;CGSNL Gene Name=SUBSTANDARD STARCH GRAIN4;Oryzabase Gene Symbol Synonym(s)=OsSSG4;Oryzabase Gene Name Synonym(s)=substandard starch grain4%2C substandard starch grain 4;Note=Amyloplast-localized protein containing DUF490%2C Regulation of starch grain sizes;Transcript_evidence=AB856288;ORF_evidence=W0RYD3;InterPro=Protein of unknown function DUF490 (IPR007452);Manual Curation=February 20%2C 2014;Literature_PMID=24335509;Oryzabase=19623;TENOR=Os01t0179400-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	4127232	4127367	.	+	.	Parent=Os01t0179400-01
Chr01	irgsp1_rep	CDS	4127368	4129194	.	+	0	Parent=Os01t0179400-01
Chr01	irgsp1_rep	CDS	4129515	4129714	.	+	0	Parent=Os01t0179400-01
Chr01	irgsp1_rep	CDS	4129826	4129884	.	+	1	Parent=Os01t0179400-01
Chr01	irgsp1_rep	CDS	4130127	4130233	.	+	2	Parent=Os01t0179400-01
Chr01	irgsp1_rep	CDS	4130987	4131123	.	+	0	Parent=Os01t0179400-01
Chr01	irgsp1_rep	CDS	4131219	4131284	.	+	1	Parent=Os01t0179400-01
Chr01	irgsp1_rep	CDS	4131924	4132152	.	+	1	Parent=Os01t0179400-01
Chr01	irgsp1_rep	CDS	4132250	4132331	.	+	0	Parent=Os01t0179400-01
Chr01	irgsp1_rep	CDS	4132998	4133157	.	+	2	Parent=Os01t0179400-01
Chr01	irgsp1_rep	CDS	4133252	4133777	.	+	1	Parent=Os01t0179400-01
Chr01	irgsp1_rep	CDS	4134347	4134517	.	+	0	Parent=Os01t0179400-01
Chr01	irgsp1_rep	CDS	4134641	4134700	.	+	0	Parent=Os01t0179400-01
Chr01	irgsp1_rep	CDS	4134904	4135026	.	+	0	Parent=Os01t0179400-01
Chr01	irgsp1_rep	CDS	4135906	4136181	.	+	0	Parent=Os01t0179400-01
Chr01	irgsp1_rep	CDS	4136282	4136347	.	+	0	Parent=Os01t0179400-01
Chr01	irgsp1_rep	CDS	4136500	4136631	.	+	0	Parent=Os01t0179400-01
Chr01	irgsp1_rep	CDS	4136977	4137798	.	+	0	Parent=Os01t0179400-01
Chr01	irgsp1_rep	CDS	4138026	4138306	.	+	0	Parent=Os01t0179400-01
Chr01	irgsp1_rep	CDS	4138564	4138796	.	+	1	Parent=Os01t0179400-01
Chr01	irgsp1_rep	CDS	4139022	4139260	.	+	2	Parent=Os01t0179400-01
Chr01	irgsp1_rep	CDS	4139367	4139558	.	+	0	Parent=Os01t0179400-01
Chr01	irgsp1_rep	CDS	4139808	4140080	.	+	0	Parent=Os01t0179400-01
Chr01	irgsp1_rep	CDS	4140186	4140332	.	+	0	Parent=Os01t0179400-01
Chr01	irgsp1_rep	three_prime_UTR	4140333	4140631	.	+	.	Parent=Os01t0179400-01
Chr01	irgsp1_rep	mRNA	4144718	4150134	.	+	.	ID=Os01t0179500-01;Name=Os01t0179500-01;Locus_id=Os01g0179500;Note=Enhancer of polycomb-like%2C N-terminal domain containing protein.;Transcript_evidence=AK105394 (DDBJ%2C Best hit);ORF_evidence=A2ZPY0 (UniProt);InterPro=Enhancer of polycomb-like%2C N-terminal (IPR019542);NIAS_FLcDNA=001-123-B05;Expression=AK105394;TENOR=Os01t0179500-01;KEGG=Os01t0179500-01
Chr01	irgsp1_rep	five_prime_UTR	4144718	4144718	.	+	.	Parent=Os01t0179500-01
Chr01	irgsp1_rep	CDS	4144719	4145510	.	+	0	Parent=Os01t0179500-01
Chr01	irgsp1_rep	CDS	4146610	4148259	.	+	0	Parent=Os01t0179500-01
Chr01	irgsp1_rep	CDS	4148942	4149185	.	+	0	Parent=Os01t0179500-01
Chr01	irgsp1_rep	CDS	4149280	4149830	.	+	2	Parent=Os01t0179500-01
Chr01	irgsp1_rep	three_prime_UTR	4149831	4150134	.	+	.	Parent=Os01t0179500-01
Chr01	irgsp1_rep	mRNA	4153077	4154674	.	-	.	ID=Os01t0179600-01;Name=Os01t0179600-01;Locus_id=Os01g0179600;CGSNL Gene Symbol=UGT75K1;CGSNL Gene Name=UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 75K1;Oryzabase Gene Symbol Synonym(s)=OsUGT75K1;Oryzabase Gene Name Synonym(s)=UDP-glucose-dependent glycosyltransferase 75K1%2C chloroplastic  crocetin glucosyltransferase;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK243646 (DDBJ%2C Best hit);ORF_evidence=NP_001042201.2 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J100088D24;Oryzabase=21822;TENOR=Os01t0179600-01;KEGG=Os01t0179600-01
Chr01	irgsp1_rep	five_prime_UTR	4154653	4154674	.	-	.	Parent=Os01t0179600-01
Chr01	irgsp1_rep	CDS	4153189	4154652	.	-	0	Parent=Os01t0179600-01
Chr01	irgsp1_rep	three_prime_UTR	4153077	4153188	.	-	.	Parent=Os01t0179600-01
Chr01	irgsp1_rep	mRNA	4160736	4164317	.	-	.	ID=Os01t0179700-01;Name=Os01t0179700-01;Locus_id=Os01g0179700;Oryzabase Gene Symbol Synonym(s)=OsRab1C1;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab1C1%2C GTP-binding protein OsRab1;Note=Similar to GTP-binding protein YPTM2.;Transcript_evidence=AK059888 (DDBJ%2C Best hit),AK069903 (DDBJ%2C Best hit);ORF_evidence=NP_001105441.1 (RefSeq);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: intracellular protein transport (GO:0006886),Biological Process: nucleocytoplasmic transport (GO:0006913),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Cellular Component: membrane (GO:0016020),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Ran GTPase (IPR002041),Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C Ras type (IPR020849),Small GTPase superfamily%2C ARF type (IPR024156);NIAS_FLcDNA=006-208-C02,J023036J02;Oryzabase=11073;Expression=AK059888;TENOR=Os01t0179700-01;KEGG=Os01t0179700-01
Chr01	irgsp1_rep	five_prime_UTR	4164202	4164317	.	-	.	Parent=Os01t0179700-01
Chr01	irgsp1_rep	CDS	4164188	4164201	.	-	0	Parent=Os01t0179700-01
Chr01	irgsp1_rep	CDS	4163295	4163367	.	-	1	Parent=Os01t0179700-01
Chr01	irgsp1_rep	CDS	4162923	4162970	.	-	0	Parent=Os01t0179700-01
Chr01	irgsp1_rep	CDS	4162796	4162843	.	-	0	Parent=Os01t0179700-01
Chr01	irgsp1_rep	CDS	4161629	4161700	.	-	0	Parent=Os01t0179700-01
Chr01	irgsp1_rep	CDS	4161378	4161533	.	-	0	Parent=Os01t0179700-01
Chr01	irgsp1_rep	CDS	4161140	4161243	.	-	0	Parent=Os01t0179700-01
Chr01	irgsp1_rep	CDS	4160946	4161042	.	-	1	Parent=Os01t0179700-01
Chr01	irgsp1_rep	three_prime_UTR	4160736	4160945	.	-	.	Parent=Os01t0179700-01
Chr01	irgsp1_rep	mRNA	4160867	4163366	.	+	.	ID=Os01t0179750-00;Name=Os01t0179750-00;Locus_id=Os01g0179750;Note=Non-protein coding transcript.;Transcript_evidence=BT019232 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0179750-00
Chr01	irgsp1_rep	exon	4160867	4161041	.	+	.	Parent=Os01t0179750-00
Chr01	irgsp1_rep	exon	4161139	4161242	.	+	.	Parent=Os01t0179750-00
Chr01	irgsp1_rep	exon	4161377	4161533	.	+	.	Parent=Os01t0179750-00
Chr01	irgsp1_rep	exon	4161629	4161692	.	+	.	Parent=Os01t0179750-00
Chr01	irgsp1_rep	exon	4162787	4162871	.	+	.	Parent=Os01t0179750-00
Chr01	irgsp1_rep	exon	4163269	4163366	.	+	.	Parent=Os01t0179750-00
Chr01	irgsp1_rep	mRNA	4167514	4173240	.	-	.	ID=Os01t0179800-01;Name=Os01t0179800-01;Locus_id=Os01g0179800;Note=TMS membrane protein/tumour differentially expressed protein family protein.;Transcript_evidence=AK069734 (DDBJ%2C Best hit);ORF_evidence=B6SVV5 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=TMS membrane protein/tumour differentially expressed protein (IPR005016);NIAS_FLcDNA=J023033E12;Expression=AK069734;TENOR=Os01t0179800-01;KEGG=Os01t0179800-01
Chr01	irgsp1_rep	five_prime_UTR	4173146	4173240	.	-	.	Parent=Os01t0179800-01
Chr01	irgsp1_rep	five_prime_UTR	4171230	4171265	.	-	.	Parent=Os01t0179800-01
Chr01	irgsp1_rep	CDS	4170909	4171229	.	-	0	Parent=Os01t0179800-01
Chr01	irgsp1_rep	CDS	4170273	4170432	.	-	0	Parent=Os01t0179800-01
Chr01	irgsp1_rep	CDS	4170151	4170175	.	-	2	Parent=Os01t0179800-01
Chr01	irgsp1_rep	CDS	4169887	4169976	.	-	1	Parent=Os01t0179800-01
Chr01	irgsp1_rep	CDS	4169316	4169487	.	-	1	Parent=Os01t0179800-01
Chr01	irgsp1_rep	CDS	4169112	4169185	.	-	0	Parent=Os01t0179800-01
Chr01	irgsp1_rep	CDS	4168915	4168984	.	-	1	Parent=Os01t0179800-01
Chr01	irgsp1_rep	CDS	4168731	4168802	.	-	0	Parent=Os01t0179800-01
Chr01	irgsp1_rep	CDS	4168509	4168648	.	-	0	Parent=Os01t0179800-01
Chr01	irgsp1_rep	CDS	4168302	4168375	.	-	1	Parent=Os01t0179800-01
Chr01	irgsp1_rep	CDS	4167867	4167934	.	-	2	Parent=Os01t0179800-01
Chr01	irgsp1_rep	three_prime_UTR	4167514	4167866	.	-	.	Parent=Os01t0179800-01
Chr01	irgsp1_rep	mRNA	4175051	4177246	.	-	.	ID=Os01t0179901-01;Name=Os01t0179901-01;Locus_id=Os01g0179901;Note=Conserved hypothetical protein.;Transcript_evidence=AK242152 (DDBJ%2C Best hit);ORF_evidence=NP_001172204.1 (RefSeq);NIAS_FLcDNA=J075153K16;TENOR=Os01t0179901-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	4177198	4177246	.	-	.	Parent=Os01t0179901-01
Chr01	irgsp1_rep	CDS	4176957	4177197	.	-	0	Parent=Os01t0179901-01
Chr01	irgsp1_rep	CDS	4175628	4175656	.	-	2	Parent=Os01t0179901-01
Chr01	irgsp1_rep	three_prime_UTR	4175051	4175627	.	-	.	Parent=Os01t0179901-01
Chr01	irgsp1_rep	mRNA	4179207	4181412	.	-	.	ID=Os01t0180000-01;Name=Os01t0180000-01;Locus_id=Os01g0180000;Oryzabase Gene Name Synonym(s)=Extensin family protein;Note=Pistil-specific extensin-like protein family protein.;Transcript_evidence=AK103199 (DDBJ%2C Best hit);ORF_evidence=NP_001150408.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=J033122A11;Oryzabase=21950;Expression=AK103199;TENOR=Os01t0180000-01;KEGG=Os01t0180000-01
Chr01	irgsp1_rep	five_prime_UTR	4181312	4181412	.	-	.	Parent=Os01t0180000-01
Chr01	irgsp1_rep	CDS	4179749	4181311	.	-	0	Parent=Os01t0180000-01
Chr01	irgsp1_rep	three_prime_UTR	4179207	4179748	.	-	.	Parent=Os01t0180000-01
Chr01	irgsp1_rep	mRNA	4180207	4181178	.	+	.	ID=Os01t0180050-00;Name=Os01t0180050-00;Locus_id=Os01g0180050;Note=Hypothetical protein.;Transcript_evidence=BT068200 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0180050-00
Chr01	irgsp1_rep	five_prime_UTR	4180207	4180207	.	+	.	Parent=Os01t0180050-00
Chr01	irgsp1_rep	CDS	4180208	4180789	.	+	0	Parent=Os01t0180050-00
Chr01	irgsp1_rep	CDS	4180877	4181178	.	+	0	Parent=Os01t0180050-00
Chr01	irgsp1_rep	mRNA	4208556	4213302	.	-	.	ID=Os01t0180300-01;Name=Os01t0180300-01;Locus_id=Os01g0180300;Note=Lipoprotein%2C type 6 family protein.;Transcript_evidence=AK120377 (DDBJ%2C Best hit);ORF_evidence=B9ETH2 (UniProt);NIAS_FLcDNA=J013071N06;Expression=AK120377;TENOR=Os01t0180300-01;KEGG=Os01t0180300-01
Chr01	irgsp1_rep	five_prime_UTR	4213146	4213302	.	-	.	Parent=Os01t0180300-01
Chr01	irgsp1_rep	CDS	4212857	4213145	.	-	0	Parent=Os01t0180300-01
Chr01	irgsp1_rep	CDS	4211056	4211291	.	-	2	Parent=Os01t0180300-01
Chr01	irgsp1_rep	CDS	4208812	4210587	.	-	0	Parent=Os01t0180300-01
Chr01	irgsp1_rep	three_prime_UTR	4208556	4208811	.	-	.	Parent=Os01t0180300-01
Chr01	irgsp1_rep	mRNA	4208628	4210038	.	-	.	ID=Os01t0180300-02;Name=Os01t0180300-02;Locus_id=Os01g0180300;Note=Hypothetical conserved gene.;Transcript_evidence=AK061954 (DDBJ%2C Best hit);ORF_evidence=B9ETH2 (UniProt);NIAS_FLcDNA=001-042-F06;Expression=AK061954;TENOR=Os01t0180300-02;KEGG=Os01t0180300-02
Chr01	irgsp1_rep	CDS	4208812	4210038	.	-	0	Parent=Os01t0180300-02
Chr01	irgsp1_rep	three_prime_UTR	4208628	4208811	.	-	.	Parent=Os01t0180300-02
Chr01	irgsp1_rep	mRNA	4215038	4217099	.	-	.	ID=Os01t0180400-01;Name=Os01t0180400-01;Locus_id=Os01g0180400;Note=Protein of unknown function DUF581 domain containing protein.;Transcript_evidence=AK108226 (DDBJ%2C Best hit);ORF_evidence=B9ETH3 (UniProt);InterPro=Protein of unknown function DUF581 (IPR007650);NIAS_FLcDNA=002-140-F04;TENOR=Os01t0180400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	4217052	4217099	.	-	.	Parent=Os01t0180400-01
Chr01	irgsp1_rep	CDS	4216959	4217051	.	-	0	Parent=Os01t0180400-01
Chr01	irgsp1_rep	CDS	4216082	4216398	.	-	0	Parent=Os01t0180400-01
Chr01	irgsp1_rep	CDS	4215513	4215669	.	-	1	Parent=Os01t0180400-01
Chr01	irgsp1_rep	three_prime_UTR	4215038	4215512	.	-	.	Parent=Os01t0180400-01
Chr01	irgsp1_rep	mRNA	4233072	4233238	.	-	.	ID=Os01t0180500-00;Name=Os01t0180500-00;Locus_id=Os01g0180500;Note=Non-protein coding transcript.;Transcript_evidence=EU973947 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0180500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	exon	4233072	4233238	.	-	.	Parent=Os01t0180500-00
Chr01	irgsp1_rep	mRNA	4234573	4244531	.	-	.	ID=Os01t0180600-01;Name=Os01t0180600-01;Locus_id=Os01g0180600;Note=Similar to MutS homolog 7 (Fragment).;Transcript_evidence=AK122068 (DDBJ%2C Best hit);ORF_evidence=Q8RVT1 (UniProt);GO=Biological Process: mismatch repair (GO:0006298),Molecular Function: ATP binding (GO:0005524),Molecular Function: mismatched DNA binding (GO:0030983);InterPro=DNA mismatch repair protein MutS%2C C-terminal (IPR000432),DNA mismatch repair protein MutS-like%2C N-terminal (IPR007695),DNA mismatch repair protein MutS%2C core (IPR007696),DNA mismatch repair protein MutS%2C connector (IPR007860),DNA mismatch repair protein MutS-homologue MSH6 (IPR015536),DNA mismatch repair protein MutS%2C N-terminal (IPR016151);NIAS_FLcDNA=J033117G13;Expression=AK122068;TENOR=Os01t0180600-01;KEGG=Os01t0180600-01
Chr01	irgsp1_rep	five_prime_UTR	4244403	4244531	.	-	.	Parent=Os01t0180600-01
Chr01	irgsp1_rep	CDS	4244221	4244402	.	-	0	Parent=Os01t0180600-01
Chr01	irgsp1_rep	CDS	4242127	4243222	.	-	1	Parent=Os01t0180600-01
Chr01	irgsp1_rep	CDS	4241522	4241617	.	-	0	Parent=Os01t0180600-01
Chr01	irgsp1_rep	CDS	4241030	4241085	.	-	0	Parent=Os01t0180600-01
Chr01	irgsp1_rep	CDS	4240419	4240485	.	-	1	Parent=Os01t0180600-01
Chr01	irgsp1_rep	CDS	4239865	4239960	.	-	0	Parent=Os01t0180600-01
Chr01	irgsp1_rep	CDS	4238837	4238965	.	-	0	Parent=Os01t0180600-01
Chr01	irgsp1_rep	CDS	4238734	4238767	.	-	0	Parent=Os01t0180600-01
Chr01	irgsp1_rep	CDS	4238610	4238657	.	-	2	Parent=Os01t0180600-01
Chr01	irgsp1_rep	CDS	4238246	4238442	.	-	2	Parent=Os01t0180600-01
Chr01	irgsp1_rep	CDS	4237757	4237883	.	-	0	Parent=Os01t0180600-01
Chr01	irgsp1_rep	CDS	4237382	4237659	.	-	2	Parent=Os01t0180600-01
Chr01	irgsp1_rep	CDS	4237045	4237230	.	-	0	Parent=Os01t0180600-01
Chr01	irgsp1_rep	CDS	4236519	4236905	.	-	0	Parent=Os01t0180600-01
Chr01	irgsp1_rep	CDS	4236329	4236425	.	-	0	Parent=Os01t0180600-01
Chr01	irgsp1_rep	CDS	4235712	4235839	.	-	2	Parent=Os01t0180600-01
Chr01	irgsp1_rep	CDS	4234769	4235239	.	-	0	Parent=Os01t0180600-01
Chr01	irgsp1_rep	three_prime_UTR	4234573	4234768	.	-	.	Parent=Os01t0180600-01
Chr01	irgsp1_rep	mRNA	4245421	4249851	.	-	.	ID=Os01t0180700-01;Name=Os01t0180700-01;Locus_id=Os01g0180700;Note=Hypothetical conserved gene.;Transcript_evidence=AK240913 (DDBJ%2C Best hit);ORF_evidence=Q9AQU6 (UniProt);NIAS_FLcDNA=J065037E24;TENOR=Os01t0180700-01;KEGG=Os01t0180700-01
Chr01	irgsp1_rep	five_prime_UTR	4249748	4249851	.	-	.	Parent=Os01t0180700-01
Chr01	irgsp1_rep	CDS	4249610	4249747	.	-	0	Parent=Os01t0180700-01
Chr01	irgsp1_rep	CDS	4249358	4249468	.	-	0	Parent=Os01t0180700-01
Chr01	irgsp1_rep	CDS	4248434	4248520	.	-	0	Parent=Os01t0180700-01
Chr01	irgsp1_rep	CDS	4248314	4248351	.	-	0	Parent=Os01t0180700-01
Chr01	irgsp1_rep	CDS	4248149	4248230	.	-	1	Parent=Os01t0180700-01
Chr01	irgsp1_rep	CDS	4247909	4248015	.	-	0	Parent=Os01t0180700-01
Chr01	irgsp1_rep	CDS	4247625	4247787	.	-	1	Parent=Os01t0180700-01
Chr01	irgsp1_rep	CDS	4247462	4247551	.	-	0	Parent=Os01t0180700-01
Chr01	irgsp1_rep	CDS	4247172	4247283	.	-	0	Parent=Os01t0180700-01
Chr01	irgsp1_rep	CDS	4246694	4246736	.	-	2	Parent=Os01t0180700-01
Chr01	irgsp1_rep	CDS	4245714	4246311	.	-	1	Parent=Os01t0180700-01
Chr01	irgsp1_rep	three_prime_UTR	4245421	4245713	.	-	.	Parent=Os01t0180700-01
Chr01	irgsp1_rep	mRNA	4253845	4259581	.	+	.	ID=Os01t0180800-01;Name=Os01t0180800-01;Locus_id=Os01g0180800;Note=Heat shock protein Hsp70 family protein.;Transcript_evidence=AK100676 (DDBJ%2C Best hit);ORF_evidence=B6U237 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Heat shock protein Hsp70 (IPR001023),Heat shock protein 70 (IPR013126);NIAS_FLcDNA=J023113C17;Expression=AK100676;TENOR=Os01t0180800-01;KEGG=Os01t0180800-01
Chr01	irgsp1_rep	five_prime_UTR	4253845	4254006	.	+	.	Parent=Os01t0180800-01
Chr01	irgsp1_rep	five_prime_UTR	4254435	4254483	.	+	.	Parent=Os01t0180800-01
Chr01	irgsp1_rep	CDS	4254484	4255653	.	+	0	Parent=Os01t0180800-01
Chr01	irgsp1_rep	CDS	4256526	4256735	.	+	0	Parent=Os01t0180800-01
Chr01	irgsp1_rep	CDS	4256842	4256937	.	+	0	Parent=Os01t0180800-01
Chr01	irgsp1_rep	CDS	4257034	4257255	.	+	0	Parent=Os01t0180800-01
Chr01	irgsp1_rep	CDS	4257829	4258023	.	+	0	Parent=Os01t0180800-01
Chr01	irgsp1_rep	CDS	4258097	4258243	.	+	0	Parent=Os01t0180800-01
Chr01	irgsp1_rep	CDS	4258323	4258472	.	+	0	Parent=Os01t0180800-01
Chr01	irgsp1_rep	CDS	4258762	4258892	.	+	0	Parent=Os01t0180800-01
Chr01	irgsp1_rep	CDS	4258978	4259194	.	+	1	Parent=Os01t0180800-01
Chr01	irgsp1_rep	three_prime_UTR	4259195	4259581	.	+	.	Parent=Os01t0180800-01
Chr01	irgsp1_rep	mRNA	4253900	4255487	.	+	.	ID=Os01t0180800-02;Name=Os01t0180800-02;Locus_id=Os01g0180800;Note=Similar to heat shock 70 kDa protein 4.;Transcript_evidence=AK059244 (DDBJ%2C Best hit);ORF_evidence=NP_001147805.1 (RefSeq);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Heat shock protein Hsp70 (IPR001023),Heat shock protein 70 (IPR013126);NIAS_FLcDNA=001-024-G02;TENOR=Os01t0180800-02
Chr01	irgsp1_rep	five_prime_UTR	4253900	4254006	.	+	.	Parent=Os01t0180800-02
Chr01	irgsp1_rep	five_prime_UTR	4254435	4254483	.	+	.	Parent=Os01t0180800-02
Chr01	irgsp1_rep	CDS	4254484	4255487	.	+	0	Parent=Os01t0180800-02
Chr01	irgsp1_rep	mRNA	4257847	4259516	.	+	.	ID=Os01t0180800-03;Name=Os01t0180800-03;Locus_id=Os01g0180800;Note=Similar to heat shock 70 kDa protein 4.;Transcript_evidence=AK061691 (DDBJ%2C Best hit);ORF_evidence=NP_001147805.1 (RefSeq);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Heat shock protein Hsp70 (IPR001023),Heat shock protein 70 (IPR013126);NIAS_FLcDNA=001-037-C02;Expression=AK061691;TENOR=Os01t0180800-03;KEGG=Os01t0180800-03
Chr01	irgsp1_rep	CDS	4257847	4258023	.	+	0	Parent=Os01t0180800-03
Chr01	irgsp1_rep	CDS	4258097	4258243	.	+	0	Parent=Os01t0180800-03
Chr01	irgsp1_rep	CDS	4258323	4258472	.	+	0	Parent=Os01t0180800-03
Chr01	irgsp1_rep	CDS	4258762	4258892	.	+	0	Parent=Os01t0180800-03
Chr01	irgsp1_rep	CDS	4258978	4259194	.	+	1	Parent=Os01t0180800-03
Chr01	irgsp1_rep	three_prime_UTR	4259195	4259516	.	+	.	Parent=Os01t0180800-03
Chr01	irgsp1_rep	mRNA	4254468	4259175	.	-	.	ID=Os01t0180850-00;Name=Os01t0180850-00;Locus_id=Os01g0180850;Note=Hypothetical protein.;Transcript_evidence=tplb0021a19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0180850-00
Chr01	irgsp1_rep	five_prime_UTR	4259174	4259175	.	-	.	Parent=Os01t0180850-00
Chr01	irgsp1_rep	CDS	4258989	4259173	.	-	0	Parent=Os01t0180850-00
Chr01	irgsp1_rep	CDS	4258763	4258908	.	-	1	Parent=Os01t0180850-00
Chr01	irgsp1_rep	CDS	4258321	4258474	.	-	2	Parent=Os01t0180850-00
Chr01	irgsp1_rep	CDS	4258159	4258249	.	-	1	Parent=Os01t0180850-00
Chr01	irgsp1_rep	three_prime_UTR	4258112	4258158	.	-	.	Parent=Os01t0180850-00
Chr01	irgsp1_rep	three_prime_UTR	4257824	4258040	.	-	.	Parent=Os01t0180850-00
Chr01	irgsp1_rep	three_prime_UTR	4257033	4257244	.	-	.	Parent=Os01t0180850-00
Chr01	irgsp1_rep	three_prime_UTR	4256840	4256936	.	-	.	Parent=Os01t0180850-00
Chr01	irgsp1_rep	three_prime_UTR	4256521	4256733	.	-	.	Parent=Os01t0180850-00
Chr01	irgsp1_rep	three_prime_UTR	4254468	4255648	.	-	.	Parent=Os01t0180850-00
Chr01	irgsp1_rep	mRNA	4264247	4270356	.	+	.	ID=Os01t0180900-01;Name=Os01t0180900-01;Locus_id=Os01g0180900;RAP-DB Gene Symbol Synonym(s)=PEG1;RAP-DB Gene Name Synonym(s)=Paternally Expressed Gene1;Oryzabase Gene Symbol Synonym(s)=PEG1%2C OsPEG1;Oryzabase Gene Name Synonym(s)=paternally expressed gene1;Note=2-oxoglutarate and iron-dependent oxygenase%2C Starch accumulation;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: L-ascorbic acid binding (GO:0031418);InterPro=Oxoglutarate/iron-dependent dioxygenase (IPR005123),Prolyl 4-hydroxylase%2C alpha subunit (IPR006620);Manual Curation=April 3%2C 2017;Literature_PMID=28295376;Oryzabase=22016;TENOR=Os01t0180900-00
Chr01	irgsp1_rep	CDS	4264247	4264615	.	+	0	Parent=Os01t0180900-01
Chr01	irgsp1_rep	CDS	4264945	4264992	.	+	0	Parent=Os01t0180900-01
Chr01	irgsp1_rep	CDS	4265308	4265514	.	+	0	Parent=Os01t0180900-01
Chr01	irgsp1_rep	CDS	4265670	4265826	.	+	0	Parent=Os01t0180900-01
Chr01	irgsp1_rep	CDS	4265958	4266041	.	+	2	Parent=Os01t0180900-01
Chr01	irgsp1_rep	CDS	4266785	4266909	.	+	2	Parent=Os01t0180900-01
Chr01	irgsp1_rep	CDS	4269100	4269218	.	+	0	Parent=Os01t0180900-01
Chr01	irgsp1_rep	CDS	4269535	4269643	.	+	1	Parent=Os01t0180900-01
Chr01	irgsp1_rep	CDS	4270087	4270134	.	+	0	Parent=Os01t0180900-01
Chr01	irgsp1_rep	three_prime_UTR	4270135	4270356	.	+	.	Parent=Os01t0180900-01
Chr01	irgsp1_rep	mRNA	4272846	4276299	.	-	.	ID=Os01t0181000-00;Name=Os01t0181000-00;Locus_id=Os01g0181000;Note=Frigida-like domain containing protein.;Transcript_evidence=EU948578 (DDBJ);ORF_evidence=Q5VR39 (UniProt);InterPro=Frigida-like (IPR012474);TENOR=Os01t0181000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	4275150	4276299	.	-	0	Parent=Os01t0181000-00
Chr01	irgsp1_rep	CDS	4273999	4274174	.	-	2	Parent=Os01t0181000-00
Chr01	irgsp1_rep	CDS	4272910	4273371	.	-	0	Parent=Os01t0181000-00
Chr01	irgsp1_rep	three_prime_UTR	4272846	4272909	.	-	.	Parent=Os01t0181000-00
Chr01	irgsp1_rep	mRNA	4274611	4274976	.	-	.	ID=Os01t0181033-00;Name=Os01t0181033-00;Locus_id=Os01g0181033;Note=Similar to NADH dehydrogenase subunit 1.;Transcript_evidence=AJ010976 (DDBJ);ORF_evidence=YP_024343.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: membrane (GO:0016020);InterPro=NADH:ubiquinone oxidoreductase%2C subunit 1/F420H2 oxidoreductase subunit H (IPR001694);TENOR=Os01t0181033-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	4274803	4274976	.	-	.	Parent=Os01t0181033-00
Chr01	irgsp1_rep	CDS	4274611	4274802	.	-	0	Parent=Os01t0181033-00
Chr01	irgsp1_rep	mRNA	4277958	4278517	.	-	.	ID=Os01t0181166-00;Name=Os01t0181166-00;Locus_id=Os01g0181166;Note=Hypothetical gene.;Transcript_evidence=CU405586 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os01t0181166-00;KEGG=Os01t0181166-00
Chr01	irgsp1_rep	five_prime_UTR	4278516	4278517	.	-	.	Parent=Os01t0181166-00
Chr01	irgsp1_rep	CDS	4278132	4278515	.	-	0	Parent=Os01t0181166-00
Chr01	irgsp1_rep	three_prime_UTR	4277958	4278131	.	-	.	Parent=Os01t0181166-00
Chr01	irgsp1_rep	mRNA	4281715	4283625	.	-	.	ID=Os01t0181300-00;Name=Os01t0181300-00;Locus_id=Os01g0181300;Note=Hypothetical protein.;Transcript_evidence=CT834964 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os01t0181300-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	4283167	4283625	.	-	0	Parent=Os01t0181300-00
Chr01	irgsp1_rep	three_prime_UTR	4283068	4283166	.	-	.	Parent=Os01t0181300-00
Chr01	irgsp1_rep	three_prime_UTR	4281715	4281971	.	-	.	Parent=Os01t0181300-00
Chr01	irgsp1_rep	mRNA	4306924	4309933	.	+	.	ID=Os01t0182100-01;Name=Os01t0182100-01;Locus_id=Os01g0182100;Note=Protein of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK066557 (DDBJ%2C Best hit);ORF_evidence=A2XWG4 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=J013071B19;Expression=AK066557;TENOR=Os01t0182100-01;KEGG=Os01t0182100-01
Chr01	irgsp1_rep	five_prime_UTR	4306924	4306983	.	+	.	Parent=Os01t0182100-01
Chr01	irgsp1_rep	CDS	4306984	4308282	.	+	0	Parent=Os01t0182100-01
Chr01	irgsp1_rep	CDS	4309610	4309678	.	+	0	Parent=Os01t0182100-01
Chr01	irgsp1_rep	three_prime_UTR	4309679	4309933	.	+	.	Parent=Os01t0182100-01
Chr01	irgsp1_rep	mRNA	4313678	4315834	.	-	.	ID=Os01t0182200-01;Name=Os01t0182200-01;Locus_id=Os01g0182200;CGSNL Gene Symbol=SIP1%3B1;CGSNL Gene Name=SMALL AND BASIC INTRINSIC PROTEIN 1%3B1;Oryzabase Gene Symbol Synonym(s)=OsSIP1%3B1%2C SIP1-1;Oryzabase Gene Name Synonym(s)=Aquaporin SIP1-1%2C Small basic intrinsic protein 1-1;Note=Similar to cDNA clone:001-208-D07%2C full insert sequence.;Transcript_evidence=AK106173 (DDBJ%2C Best hit);ORF_evidence=B7EZ27 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Aquaporin-like (IPR023271);NIAS_FLcDNA=001-208-C03;Oryzabase=8527;Expression=AK106173;TENOR=Os01t0182200-01;KEGG=Os01t0182200-01
Chr01	irgsp1_rep	five_prime_UTR	4315714	4315834	.	-	.	Parent=Os01t0182200-01
Chr01	irgsp1_rep	CDS	4315509	4315713	.	-	0	Parent=Os01t0182200-01
Chr01	irgsp1_rep	CDS	4315402	4315478	.	-	2	Parent=Os01t0182200-01
Chr01	irgsp1_rep	CDS	4315047	4315319	.	-	0	Parent=Os01t0182200-01
Chr01	irgsp1_rep	CDS	4313971	4314126	.	-	0	Parent=Os01t0182200-01
Chr01	irgsp1_rep	three_prime_UTR	4313678	4313970	.	-	.	Parent=Os01t0182200-01
Chr01	irgsp1_rep	mRNA	4313699	4315812	.	-	.	ID=Os01t0182200-02;Name=Os01t0182200-02;Locus_id=Os01g0182200;CGSNL Gene Symbol=SIP1%3B1;CGSNL Gene Name=SMALL AND BASIC INTRINSIC PROTEIN 1%3B1;Oryzabase Gene Symbol Synonym(s)=OsSIP1%3B1%2C SIP1-1;Oryzabase Gene Name Synonym(s)=Aquaporin SIP1-1%2C Small basic intrinsic protein 1-1;Note=Similar to Small basic membrane integral protein ZmSIP1-2.;Transcript_evidence=AK109424 (DDBJ%2C Best hit),AK069381 (DDBJ%2C Best hit),AK106185 (DDBJ%2C Best hit);ORF_evidence=Q5VR89 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Aquaporin-like (IPR023271);NIAS_FLcDNA=006-306-A09,J023013M02,001-208-D07;Oryzabase=8527;TENOR=Os01t0182200-02
Chr01	irgsp1_rep	five_prime_UTR	4315714	4315812	.	-	.	Parent=Os01t0182200-02
Chr01	irgsp1_rep	CDS	4315402	4315713	.	-	0	Parent=Os01t0182200-02
Chr01	irgsp1_rep	CDS	4315047	4315319	.	-	0	Parent=Os01t0182200-02
Chr01	irgsp1_rep	CDS	4313971	4314126	.	-	0	Parent=Os01t0182200-02
Chr01	irgsp1_rep	three_prime_UTR	4313699	4313970	.	-	.	Parent=Os01t0182200-02
Chr01	irgsp1_rep	mRNA	4318039	4318780	.	-	.	ID=Os01t0182300-01;Name=Os01t0182300-01;Locus_id=Os01g0182300;Note=Lipocalin domain containing protein.;Transcript_evidence=AK062827 (DDBJ%2C Best hit);ORF_evidence=A2WLF0 (UniProt);NIAS_FLcDNA=001-107-F11;Expression=AK062827;TENOR=Os01t0182300-01;KEGG=Os01t0182300-01
Chr01	irgsp1_rep	five_prime_UTR	4318732	4318780	.	-	.	Parent=Os01t0182300-01
Chr01	irgsp1_rep	CDS	4318216	4318731	.	-	0	Parent=Os01t0182300-01
Chr01	irgsp1_rep	three_prime_UTR	4318039	4318215	.	-	.	Parent=Os01t0182300-01
Chr01	irgsp1_rep	mRNA	4322736	4326342	.	-	.	ID=Os01t0182400-01;Name=Os01t0182400-01;Locus_id=Os01g0182400;Note=Conserved hypothetical protein.;Transcript_evidence=AK070335 (DDBJ%2C Best hit);ORF_evidence=B9ETH7 (UniProt);NIAS_FLcDNA=J023049O12;TENOR=Os01t0182400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	4326080	4326342	.	-	.	Parent=Os01t0182400-01
Chr01	irgsp1_rep	CDS	4326025	4326079	.	-	0	Parent=Os01t0182400-01
Chr01	irgsp1_rep	CDS	4325052	4325219	.	-	2	Parent=Os01t0182400-01
Chr01	irgsp1_rep	CDS	4324542	4324747	.	-	2	Parent=Os01t0182400-01
Chr01	irgsp1_rep	CDS	4324206	4324444	.	-	0	Parent=Os01t0182400-01
Chr01	irgsp1_rep	CDS	4323909	4324104	.	-	1	Parent=Os01t0182400-01
Chr01	irgsp1_rep	CDS	4323445	4323828	.	-	0	Parent=Os01t0182400-01
Chr01	irgsp1_rep	CDS	4323261	4323353	.	-	0	Parent=Os01t0182400-01
Chr01	irgsp1_rep	CDS	4322992	4323165	.	-	0	Parent=Os01t0182400-01
Chr01	irgsp1_rep	three_prime_UTR	4322736	4322991	.	-	.	Parent=Os01t0182400-01
Chr01	irgsp1_rep	mRNA	4326675	4328688	.	+	.	ID=Os01t0182500-00;Name=Os01t0182500-00;Locus_id=Os01g0182500;Note=Hypothetical conserved gene.;Transcript_evidence=FP094722 (DDBJ);ORF_evidence=B9ETH8 (UniProt);TENOR=Os01t0182500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	4326675	4326675	.	+	.	Parent=Os01t0182500-00
Chr01	irgsp1_rep	CDS	4326676	4326843	.	+	0	Parent=Os01t0182500-00
Chr01	irgsp1_rep	CDS	4327256	4327336	.	+	0	Parent=Os01t0182500-00
Chr01	irgsp1_rep	CDS	4327876	4328235	.	+	0	Parent=Os01t0182500-00
Chr01	irgsp1_rep	three_prime_UTR	4328236	4328688	.	+	.	Parent=Os01t0182500-00
Chr01	irgsp1_rep	mRNA	4329461	4338486	.	-	.	ID=Os01t0182600-01;Name=Os01t0182600-01;Locus_id=Os01g0182600;RAP-DB Gene Symbol Synonym(s)=GI%2C OsGI;RAP-DB Gene Name Synonym(s)=GIGANTEA;CGSNL Gene Symbol=GI;CGSNL Gene Name=GIGANTEA;Oryzabase Gene Symbol Synonym(s)=OsGI%2C Gi%2C Os-GI;Oryzabase Gene Name Synonym(s)=orthologue of the arabidopsis GIGANTEA%2C Gigantea%2C protein GIGANTEA%2C Os-GIGANTEA%2C OsGIGANTEA;Note=Orthologue of the Arabidopsis GIGANTEA%2C Regulation of circadian rhythm and flowering time%2C Photoperiodic control of flowering%2C Osmotic stress response;Transcript_evidence=AK067038,AK100147;ORF_evidence=Q9AWL7;GO=Biological Process: regulation of photoperiodism%2C flowering (GO:2000028);InterPro=GIGANTEA (IPR026211),Armadillo-like helical (IPR011989);NIAS_FLcDNA=J013091I22,J023014E02;Manual Curation=July 21%2C 2017;Literature_PMID=27148296,12700762,12040096;Oryzabase=5005;Expression=AK067038,AJ133787;TENOR=Os01t0182600-01;KEGG=Os01t0182600-01
Chr01	irgsp1_rep	five_prime_UTR	4338300	4338486	.	-	.	Parent=Os01t0182600-01
Chr01	irgsp1_rep	five_prime_UTR	4336533	4336762	.	-	.	Parent=Os01t0182600-01
Chr01	irgsp1_rep	five_prime_UTR	4336438	4336455	.	-	.	Parent=Os01t0182600-01
Chr01	irgsp1_rep	CDS	4336351	4336437	.	-	0	Parent=Os01t0182600-01
Chr01	irgsp1_rep	CDS	4336181	4336258	.	-	0	Parent=Os01t0182600-01
Chr01	irgsp1_rep	CDS	4336034	4336088	.	-	0	Parent=Os01t0182600-01
Chr01	irgsp1_rep	CDS	4335813	4335955	.	-	2	Parent=Os01t0182600-01
Chr01	irgsp1_rep	CDS	4335379	4335653	.	-	0	Parent=Os01t0182600-01
Chr01	irgsp1_rep	CDS	4334898	4334956	.	-	1	Parent=Os01t0182600-01
Chr01	irgsp1_rep	CDS	4333791	4334031	.	-	2	Parent=Os01t0182600-01
Chr01	irgsp1_rep	CDS	4333563	4333713	.	-	1	Parent=Os01t0182600-01
Chr01	irgsp1_rep	CDS	4333220	4333429	.	-	0	Parent=Os01t0182600-01
Chr01	irgsp1_rep	CDS	4330925	4332421	.	-	0	Parent=Os01t0182600-01
Chr01	irgsp1_rep	CDS	4330752	4330820	.	-	0	Parent=Os01t0182600-01
Chr01	irgsp1_rep	CDS	4330333	4330551	.	-	0	Parent=Os01t0182600-01
Chr01	irgsp1_rep	CDS	4330123	4330215	.	-	0	Parent=Os01t0182600-01
Chr01	irgsp1_rep	CDS	4329725	4330030	.	-	0	Parent=Os01t0182600-01
Chr01	irgsp1_rep	three_prime_UTR	4329461	4329724	.	-	.	Parent=Os01t0182600-01
Chr01	irgsp1_rep	mRNA	4329362	4338444	.	-	.	ID=Os01t0182600-03;Name=Os01t0182600-03;Locus_id=Os01g0182600;CGSNL Gene Symbol=GI;CGSNL Gene Name=GIGANTEA;Oryzabase Gene Symbol Synonym(s)=OsGI%2C Gi%2C Os-GI;Oryzabase Gene Name Synonym(s)=orthologue of the arabidopsis GIGANTEA%2C Gigantea%2C protein GIGANTEA%2C Os-GIGANTEA%2C OsGIGANTEA;Note=GIGANTEA protein.;Transcript_evidence=AK072166 (DDBJ%2C Best hit);ORF_evidence=Q9AWL7 (UniProt);NIAS_FLcDNA=J013134K20;Oryzabase=5005;Expression=AK072166;TENOR=Os01t0182600-03;KEGG=Os01t0182600-03
Chr01	irgsp1_rep	five_prime_UTR	4338300	4338444	.	-	.	Parent=Os01t0182600-03
Chr01	irgsp1_rep	five_prime_UTR	4336533	4336762	.	-	.	Parent=Os01t0182600-03
Chr01	irgsp1_rep	five_prime_UTR	4336438	4336467	.	-	.	Parent=Os01t0182600-03
Chr01	irgsp1_rep	CDS	4336351	4336437	.	-	0	Parent=Os01t0182600-03
Chr01	irgsp1_rep	CDS	4336181	4336258	.	-	0	Parent=Os01t0182600-03
Chr01	irgsp1_rep	CDS	4336034	4336088	.	-	0	Parent=Os01t0182600-03
Chr01	irgsp1_rep	CDS	4335813	4335955	.	-	2	Parent=Os01t0182600-03
Chr01	irgsp1_rep	CDS	4335379	4335653	.	-	0	Parent=Os01t0182600-03
Chr01	irgsp1_rep	CDS	4334898	4334956	.	-	1	Parent=Os01t0182600-03
Chr01	irgsp1_rep	CDS	4333791	4334031	.	-	2	Parent=Os01t0182600-03
Chr01	irgsp1_rep	CDS	4333563	4333713	.	-	1	Parent=Os01t0182600-03
Chr01	irgsp1_rep	CDS	4333220	4333429	.	-	0	Parent=Os01t0182600-03
Chr01	irgsp1_rep	CDS	4330925	4332421	.	-	0	Parent=Os01t0182600-03
Chr01	irgsp1_rep	CDS	4330752	4330820	.	-	0	Parent=Os01t0182600-03
Chr01	irgsp1_rep	CDS	4330333	4330551	.	-	0	Parent=Os01t0182600-03
Chr01	irgsp1_rep	CDS	4330123	4330215	.	-	0	Parent=Os01t0182600-03
Chr01	irgsp1_rep	CDS	4329725	4330030	.	-	0	Parent=Os01t0182600-03
Chr01	irgsp1_rep	three_prime_UTR	4329362	4329724	.	-	.	Parent=Os01t0182600-03
Chr01	irgsp1_rep	mRNA	4347188	4356468	.	-	.	ID=Os01t0182700-01;Name=Os01t0182700-01;Locus_id=Os01g0182700;RAP-DB Gene Symbol Synonym(s)=OsWRKY102;RAP-DB Gene Name Synonym(s)=WRKY GENE 102;CGSNL Gene Symbol=WRKY102;CGSNL Gene Name=WRKY GENE 102;Oryzabase Gene Symbol Synonym(s)=OsWRKY102;Note=Transcriptional repressor for secondary cell wall formation%2C Repression of rice lignification;Transcript_evidence=AK108755;ORF_evidence=B7F1L8;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA-binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=WRKY domain superfamily (IPR036576),WRKY domain (IPR003657);NIAS_FLcDNA=002-150-F11;Manual Curation=June 18%2C 2020;Literature_PMID=32539998,Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6594;Expression=AK108755;TENOR=Os01t0182700-01;KEGG=Os01t0182700-01
Chr01	irgsp1_rep	five_prime_UTR	4356396	4356468	.	-	.	Parent=Os01t0182700-01
Chr01	irgsp1_rep	CDS	4356043	4356395	.	-	0	Parent=Os01t0182700-01
Chr01	irgsp1_rep	CDS	4355623	4355940	.	-	1	Parent=Os01t0182700-01
Chr01	irgsp1_rep	CDS	4347476	4347647	.	-	1	Parent=Os01t0182700-01
Chr01	irgsp1_rep	three_prime_UTR	4347188	4347475	.	-	.	Parent=Os01t0182700-01
Chr01	irgsp1_rep	mRNA	4375261	4377273	.	+	.	ID=Os01t0182832-00;Name=Os01t0182832-00;Locus_id=Os01g0182832;Note=Hypothetical conserved gene.;Transcript_evidence=EU940917 (DDBJ);ORF_evidence=B9ETI1 (UniProt);TENOR=Os01t0182832-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	4375261	4375308	.	+	.	Parent=Os01t0182832-00
Chr01	irgsp1_rep	CDS	4375309	4377273	.	+	0	Parent=Os01t0182832-00
Chr01	irgsp1_rep	mRNA	4391229	4393420	.	+	.	ID=Os01t0182900-01;Name=Os01t0182900-01;Locus_id=Os01g0182900;Note=Conserved hypothetical protein.;Transcript_evidence=AK061255 (DDBJ%2C Best hit);ORF_evidence=B9ETI1 (UniProt);NIAS_FLcDNA=006-212-A11;TENOR=Os01t0182900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	4391229	4391453	.	+	0	Parent=Os01t0182900-01
Chr01	irgsp1_rep	CDS	4392293	4393045	.	+	0	Parent=Os01t0182900-01
Chr01	irgsp1_rep	three_prime_UTR	4393046	4393420	.	+	.	Parent=Os01t0182900-01
Chr01	irgsp1_rep	mRNA	4395060	4397438	.	+	.	ID=Os01t0183000-01;Name=Os01t0183000-01;Locus_id=Os01g0183000;Note=Similar to GmCK3p (EC 2.7.1.32) (Fragment).;Transcript_evidence=AK287974 (DDBJ%2C Best hit);ORF_evidence=B6UIG4 (UniProt);GO=Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Choline/ethanolamine kinase (IPR002573),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J075078N24;TENOR=Os01t0183000-01;KEGG=Os01t0183000-01 (EC:2.7.1.32)
Chr01	irgsp1_rep	five_prime_UTR	4395060	4395102	.	+	.	Parent=Os01t0183000-01
Chr01	irgsp1_rep	CDS	4395103	4395513	.	+	0	Parent=Os01t0183000-01
Chr01	irgsp1_rep	CDS	4395641	4395762	.	+	0	Parent=Os01t0183000-01
Chr01	irgsp1_rep	CDS	4395862	4396057	.	+	1	Parent=Os01t0183000-01
Chr01	irgsp1_rep	CDS	4396275	4396392	.	+	0	Parent=Os01t0183000-01
Chr01	irgsp1_rep	CDS	4396499	4396546	.	+	2	Parent=Os01t0183000-01
Chr01	irgsp1_rep	CDS	4396691	4396791	.	+	2	Parent=Os01t0183000-01
Chr01	irgsp1_rep	CDS	4396893	4397000	.	+	0	Parent=Os01t0183000-01
Chr01	irgsp1_rep	three_prime_UTR	4397001	4397438	.	+	.	Parent=Os01t0183000-01
Chr01	irgsp1_rep	mRNA	4397653	4401942	.	+	.	ID=Os01t0183100-01;Name=Os01t0183100-01;Locus_id=Os01g0183100;Oryzabase Gene Symbol Synonym(s)=OsWD40-5;Note=CytoChrome cd1-nitrite reductase-like%2C C-terminal haem d1 domain containing protein.;Transcript_evidence=AK111760 (DDBJ%2C Best hit);ORF_evidence=NP_187664.2 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),BING4%2C C-terminal (IPR012952),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J023063M08;Oryzabase=10686;Expression=AK111760;TENOR=Os01t0183100-01;KEGG=Os01t0183100-01
Chr01	irgsp1_rep	five_prime_UTR	4397653	4397881	.	+	.	Parent=Os01t0183100-01
Chr01	irgsp1_rep	five_prime_UTR	4398030	4398035	.	+	.	Parent=Os01t0183100-01
Chr01	irgsp1_rep	CDS	4398036	4398155	.	+	0	Parent=Os01t0183100-01
Chr01	irgsp1_rep	CDS	4398246	4398335	.	+	0	Parent=Os01t0183100-01
Chr01	irgsp1_rep	CDS	4398445	4398583	.	+	0	Parent=Os01t0183100-01
Chr01	irgsp1_rep	CDS	4399125	4399243	.	+	2	Parent=Os01t0183100-01
Chr01	irgsp1_rep	CDS	4399492	4399559	.	+	0	Parent=Os01t0183100-01
Chr01	irgsp1_rep	CDS	4400409	4400457	.	+	1	Parent=Os01t0183100-01
Chr01	irgsp1_rep	CDS	4400713	4401732	.	+	0	Parent=Os01t0183100-01
Chr01	irgsp1_rep	three_prime_UTR	4401733	4401942	.	+	.	Parent=Os01t0183100-01
Chr01	irgsp1_rep	mRNA	4402668	4407292	.	-	.	ID=Os01t0183300-01;Name=Os01t0183300-01;Locus_id=Os01g0183300;Note=Endonuclease/exonuclease/phosphatase domain containing protein.;Transcript_evidence=AK110423 (DDBJ%2C Best hit);ORF_evidence=B6SXL1 (UniProt);GO=Molecular Function: inositol or phosphatidylinositol phosphatase activity (GO:0004437);InterPro=Inositol polyphosphate-related phosphatase (IPR000300),Endonuclease/exonuclease/phosphatase (IPR005135);NIAS_FLcDNA=002-166-A08;Expression=AK110423;TENOR=Os01t0183300-01;KEGG=Os01t0183300-01 (EC:3.1.3.36)
Chr01	irgsp1_rep	five_prime_UTR	4407016	4407292	.	-	.	Parent=Os01t0183300-01
Chr01	irgsp1_rep	CDS	4406980	4407015	.	-	0	Parent=Os01t0183300-01
Chr01	irgsp1_rep	CDS	4406754	4406865	.	-	0	Parent=Os01t0183300-01
Chr01	irgsp1_rep	CDS	4406558	4406614	.	-	2	Parent=Os01t0183300-01
Chr01	irgsp1_rep	CDS	4404546	4405707	.	-	2	Parent=Os01t0183300-01
Chr01	irgsp1_rep	CDS	4404339	4404447	.	-	1	Parent=Os01t0183300-01
Chr01	irgsp1_rep	CDS	4403860	4404002	.	-	0	Parent=Os01t0183300-01
Chr01	irgsp1_rep	CDS	4402847	4403063	.	-	1	Parent=Os01t0183300-01
Chr01	irgsp1_rep	three_prime_UTR	4402668	4402846	.	-	.	Parent=Os01t0183300-01
Chr01	irgsp1_rep	mRNA	4415416	4416182	.	+	.	ID=Os01t0183400-01;Name=Os01t0183400-01;Locus_id=Os01g0183400;RAP-DB Gene Symbol Synonym(s)=OsNF-YC13;RAP-DB Gene Name Synonym(s)=NUCLEAR FACTOR-Y subunit C13%2C NF-Y subfamily C member 13;CGSNL Gene Symbol=NFYC13;CGSNL Gene Name=NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-13;Oryzabase Gene Symbol Synonym(s)=OsNF-YC13%2C NF-YC13;Oryzabase Gene Name Synonym(s)=Nuclear transcription factor Y subunit C-13%2C NUCLEAR FACTOR-Y subunit C13%2C NUCLEAR FACTOR-Y subunit NF-YC13%2C NF-Y subfamily C member 13;Note=Transcription factor subunit%2C Salt tolerance;Transcript_evidence=AK373759;ORF_evidence=Q5VRY6;GO=Molecular Function: protein heterodimerization activity (GO:0046982);InterPro=Histone-fold (IPR009072),Transcription factor CBF/NF-Y/archaeal histone domain (IPR003958);Manual Curation=April 2%2C 2018;Literature_PMID=28839256;Oryzabase=21808;TENOR=Os01t0183400-00;KEGG=Os01t0183400-00;Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737)
Chr01	irgsp1_rep	CDS	4415416	4416132	.	+	0	Parent=Os01t0183400-01
Chr01	irgsp1_rep	three_prime_UTR	4416133	4416182	.	+	.	Parent=Os01t0183400-01
Chr01	irgsp1_rep	mRNA	4418239	4419153	.	+	.	ID=Os01t0183500-01;Name=Os01t0183500-01;Locus_id=Os01g0183500;Note=CytoChrome P450 family protein.;Transcript_evidence=AK242195 (DDBJ%2C Best hit);ORF_evidence=Q6RYE0 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J075165D22;TENOR=Os01t0183500-01;KEGG=Os01t0183500-01
Chr01	irgsp1_rep	five_prime_UTR	4418239	4418239	.	+	.	Parent=Os01t0183500-01
Chr01	irgsp1_rep	CDS	4418240	4418403	.	+	0	Parent=Os01t0183500-01
Chr01	irgsp1_rep	CDS	4418516	4418927	.	+	1	Parent=Os01t0183500-01
Chr01	irgsp1_rep	three_prime_UTR	4418928	4419153	.	+	.	Parent=Os01t0183500-01
Chr01	irgsp1_rep	mRNA	4421318	4423105	.	+	.	ID=Os01t0183600-01;Name=Os01t0183600-01;Locus_id=Os01g0183600;CGSNL Gene Symbol=CYP96E1;CGSNL Gene Name=P-450 96E1;Oryzabase Gene Symbol Synonym(s)=OsCYP96E1;Oryzabase Gene Name Synonym(s)=CytoChrome P450 96E1;Note=CytoChrome P450 family protein.;Transcript_evidence=AK110852 (DDBJ%2C Best hit);ORF_evidence=B9TST2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=002-172-C07;Oryzabase=19318;Expression=AK110852;TENOR=Os01t0183600-01;KEGG=Os01t0183600-01
Chr01	irgsp1_rep	five_prime_UTR	4421318	4421380	.	+	.	Parent=Os01t0183600-01
Chr01	irgsp1_rep	CDS	4421381	4422898	.	+	0	Parent=Os01t0183600-01
Chr01	irgsp1_rep	three_prime_UTR	4422899	4423105	.	+	.	Parent=Os01t0183600-01
Chr01	irgsp1_rep	mRNA	4423907	4426863	.	-	.	ID=Os01t0183633-01;Name=Os01t0183633-01;Locus_id=Os01g0183633;Note=Similar to predicted protein.;Transcript_evidence=AK318597 (DDBJ%2C Best hit);ORF_evidence=NP_001172209.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L18a (IPR021138);NIAS_FLcDNA=J100063C05;TENOR=Os01t0183633-01;KEGG=Os01t0183633-01
Chr01	irgsp1_rep	five_prime_UTR	4426544	4426863	.	-	.	Parent=Os01t0183633-01
Chr01	irgsp1_rep	five_prime_UTR	4425521	4425673	.	-	.	Parent=Os01t0183633-01
Chr01	irgsp1_rep	CDS	4425511	4425520	.	-	0	Parent=Os01t0183633-01
Chr01	irgsp1_rep	CDS	4425002	4425134	.	-	2	Parent=Os01t0183633-01
Chr01	irgsp1_rep	CDS	4424793	4424910	.	-	1	Parent=Os01t0183633-01
Chr01	irgsp1_rep	CDS	4424191	4424259	.	-	0	Parent=Os01t0183633-01
Chr01	irgsp1_rep	three_prime_UTR	4423907	4424190	.	-	.	Parent=Os01t0183633-01
Chr01	irgsp1_rep	mRNA	4434129	4437827	.	+	.	ID=Os01t0183800-01;Name=Os01t0183800-01;Locus_id=Os01g0183800;Oryzabase Gene Symbol Synonym(s)=OsFbox004%2C OsFbox4%2C Os_F0387;Oryzabase Gene Name Synonym(s)=F-box protein 4;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK106385 (DDBJ%2C Best hit);ORF_evidence=NP_001182794.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Protein of unknown function DUF295 (IPR005174);NIAS_FLcDNA=002-102-E05;Oryzabase=16807;Expression=AK106385;TENOR=Os01t0183800-01;KEGG=Os01t0183800-01
Chr01	irgsp1_rep	five_prime_UTR	4434129	4434386	.	+	.	Parent=Os01t0183800-01
Chr01	irgsp1_rep	five_prime_UTR	4435913	4436027	.	+	.	Parent=Os01t0183800-01
Chr01	irgsp1_rep	CDS	4436028	4436047	.	+	0	Parent=Os01t0183800-01
Chr01	irgsp1_rep	CDS	4436618	4437695	.	+	1	Parent=Os01t0183800-01
Chr01	irgsp1_rep	three_prime_UTR	4437696	4437827	.	+	.	Parent=Os01t0183800-01
Chr01	irgsp1_rep	mRNA	4438266	4438766	.	+	.	ID=Os01t0183850-00;Name=Os01t0183850-00;Locus_id=Os01g0183850;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8ADM3 (UniProt);TENOR=Os01t0183850-00
Chr01	irgsp1_rep	CDS	4438266	4438766	.	+	0	Parent=Os01t0183850-00
Chr01	irgsp1_rep	mRNA	4440933	4441314	.	-	.	ID=Os01t0183950-00;Name=Os01t0183950-00;Locus_id=Os01g0183950;Note=Hypothetical protein.;Transcript_evidence=EU942531 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0183950-00
Chr01	irgsp1_rep	CDS	4440934	4441314	.	-	0	Parent=Os01t0183950-00
Chr01	irgsp1_rep	three_prime_UTR	4440933	4440933	.	-	.	Parent=Os01t0183950-00
Chr01	irgsp1_rep	mRNA	4444670	4448016	.	+	.	ID=Os01t0184000-01;Name=Os01t0184000-01;Locus_id=Os01g0184000;Note=NUC156 family protein.;Transcript_evidence=AK100604 (DDBJ%2C Best hit);ORF_evidence=NP_974765.1 (RefSeq);InterPro=Pre-mRNA cleavage complex II Clp1 (IPR010655);NIAS_FLcDNA=J023107F13;Expression=AK100604;TENOR=Os01t0184000-01;KEGG=Os01t0184000-01
Chr01	irgsp1_rep	five_prime_UTR	4444670	4444767	.	+	.	Parent=Os01t0184000-01
Chr01	irgsp1_rep	CDS	4444768	4444949	.	+	0	Parent=Os01t0184000-01
Chr01	irgsp1_rep	CDS	4445053	4445150	.	+	1	Parent=Os01t0184000-01
Chr01	irgsp1_rep	CDS	4445275	4445308	.	+	2	Parent=Os01t0184000-01
Chr01	irgsp1_rep	CDS	4445629	4445780	.	+	1	Parent=Os01t0184000-01
Chr01	irgsp1_rep	CDS	4445871	4446051	.	+	2	Parent=Os01t0184000-01
Chr01	irgsp1_rep	CDS	4446707	4446887	.	+	1	Parent=Os01t0184000-01
Chr01	irgsp1_rep	CDS	4447034	4447142	.	+	0	Parent=Os01t0184000-01
Chr01	irgsp1_rep	CDS	4447324	4447451	.	+	2	Parent=Os01t0184000-01
Chr01	irgsp1_rep	CDS	4447758	4447832	.	+	0	Parent=Os01t0184000-01
Chr01	irgsp1_rep	three_prime_UTR	4447833	4448016	.	+	.	Parent=Os01t0184000-01
Chr01	irgsp1_rep	mRNA	4444750	4448384	.	+	.	ID=Os01t0184000-02;Name=Os01t0184000-02;Locus_id=Os01g0184000;Note=NUC156 family protein.;Transcript_evidence=AK071130 (DDBJ%2C Best hit);ORF_evidence=NP_974765.1 (RefSeq);InterPro=Pre-mRNA cleavage complex II Clp1 (IPR010655);NIAS_FLcDNA=J023078C01;Expression=AK071130;TENOR=Os01t0184000-02;KEGG=Os01t0184000-02
Chr01	irgsp1_rep	five_prime_UTR	4444750	4444767	.	+	.	Parent=Os01t0184000-02
Chr01	irgsp1_rep	CDS	4444768	4444949	.	+	0	Parent=Os01t0184000-02
Chr01	irgsp1_rep	CDS	4445053	4445150	.	+	1	Parent=Os01t0184000-02
Chr01	irgsp1_rep	CDS	4445275	4445308	.	+	2	Parent=Os01t0184000-02
Chr01	irgsp1_rep	CDS	4445629	4445780	.	+	1	Parent=Os01t0184000-02
Chr01	irgsp1_rep	CDS	4445871	4446051	.	+	2	Parent=Os01t0184000-02
Chr01	irgsp1_rep	CDS	4446707	4446887	.	+	1	Parent=Os01t0184000-02
Chr01	irgsp1_rep	CDS	4447034	4447142	.	+	0	Parent=Os01t0184000-02
Chr01	irgsp1_rep	CDS	4447324	4447451	.	+	2	Parent=Os01t0184000-02
Chr01	irgsp1_rep	CDS	4447758	4447832	.	+	0	Parent=Os01t0184000-02
Chr01	irgsp1_rep	three_prime_UTR	4447833	4448384	.	+	.	Parent=Os01t0184000-02
Chr01	irgsp1_rep	mRNA	4449056	4449806	.	+	.	ID=Os01t0184050-00;Name=Os01t0184050-00;Locus_id=Os01g0184050;Note=Hypothetical protein.;Transcript_evidence=BT016978 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0184050-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	4449056	4449155	.	+	.	Parent=Os01t0184050-00
Chr01	irgsp1_rep	CDS	4449156	4449806	.	+	0	Parent=Os01t0184050-00
Chr01	irgsp1_rep	mRNA	4449070	4449876	.	-	.	ID=Os01t0184100-01;Name=Os01t0184100-01;Locus_id=Os01g0184100;RAP-DB Gene Symbol Synonym(s)=OsHsp18.0%2C Oshsp18.0-CII;RAP-DB Gene Name Synonym(s)=Oryza sativa small heat shock protein 18.0;CGSNL Gene Symbol=HSP18.0-CII;CGSNL Gene Name=18.0 KDA CLASS II HEAT SHOCK PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsHSP18.0-CII%2C Oshsp18.0-CII%2C OsHSP18.0%2C OsHSP18.2;Oryzabase Gene Name Synonym(s)=18.0 kDa class II heat shock protein%2C small heat shock protein 18.0;Note=Class II small heat shock protein%2C Positive regulation in both Xoo resistance and heat/salt tolerance;Transcript_evidence=AK071240,DQ180746 (Tainong No. 67);ORF_evidence=Q5VRY1;InterPro=HSP20-like chaperone (IPR008978),Alpha crystallin/Hsp20 domain (IPR002068);NIAS_FLcDNA=J023085O10;Manual Curation=March 13%2C 2018;Literature_PMID=28900229,DOI:10.1016/j.plantsci.2006.07.017;Oryzabase=6169;TENOR=Os01t0184100-01;KEGG=Os01t0184100-01;Subcellular location=cytoplasm (GO:0005737), nuclear envelope (GO:0005635)
Chr01	irgsp1_rep	five_prime_UTR	4449791	4449876	.	-	.	Parent=Os01t0184100-01
Chr01	irgsp1_rep	CDS	4449290	4449790	.	-	0	Parent=Os01t0184100-01
Chr01	irgsp1_rep	three_prime_UTR	4449070	4449289	.	-	.	Parent=Os01t0184100-01
Chr01	irgsp1_rep	mRNA	4451551	4457689	.	-	.	ID=Os01t0184200-01;Name=Os01t0184200-01;Locus_id=Os01g0184200;Note=Similar to OSIGBa0132G14.1 protein.;Transcript_evidence=AK120391 (DDBJ%2C Best hit);ORF_evidence=Q01MX2 (UniProt);NIAS_FLcDNA=J013074K17;Oryzabase=19547;TENOR=Os01t0184200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	4457284	4457689	.	-	.	Parent=Os01t0184200-01
Chr01	irgsp1_rep	CDS	4456978	4457283	.	-	0	Parent=Os01t0184200-01
Chr01	irgsp1_rep	three_prime_UTR	4456888	4456977	.	-	.	Parent=Os01t0184200-01
Chr01	irgsp1_rep	three_prime_UTR	4456558	4456677	.	-	.	Parent=Os01t0184200-01
Chr01	irgsp1_rep	three_prime_UTR	4456274	4456404	.	-	.	Parent=Os01t0184200-01
Chr01	irgsp1_rep	three_prime_UTR	4456088	4456196	.	-	.	Parent=Os01t0184200-01
Chr01	irgsp1_rep	three_prime_UTR	4455883	4455943	.	-	.	Parent=Os01t0184200-01
Chr01	irgsp1_rep	three_prime_UTR	4452766	4455209	.	-	.	Parent=Os01t0184200-01
Chr01	irgsp1_rep	three_prime_UTR	4452541	4452666	.	-	.	Parent=Os01t0184200-01
Chr01	irgsp1_rep	three_prime_UTR	4452136	4452235	.	-	.	Parent=Os01t0184200-01
Chr01	irgsp1_rep	three_prime_UTR	4451909	4451960	.	-	.	Parent=Os01t0184200-01
Chr01	irgsp1_rep	three_prime_UTR	4451551	4451758	.	-	.	Parent=Os01t0184200-01
Chr01	irgsp1_rep	mRNA	4485764	4490158	.	-	.	ID=Os01t0184500-01;Name=Os01t0184500-01;Locus_id=Os01g0184500;Oryzabase Gene Symbol Synonym(s)=OsRH39;Oryzabase Gene Name Synonym(s)=RNA helicase 39;Note=DEAD-like helicase%2C N-terminal domain containing protein.;Transcript_evidence=AK060699 (DDBJ%2C Best hit);ORF_evidence=Q56X76 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=001-030-F06;Oryzabase=19149;Expression=AK060699;TENOR=Os01t0184500-01;KEGG=Os01t0184500-01
Chr01	irgsp1_rep	five_prime_UTR	4490098	4490158	.	-	.	Parent=Os01t0184500-01
Chr01	irgsp1_rep	CDS	4489588	4490097	.	-	0	Parent=Os01t0184500-01
Chr01	irgsp1_rep	CDS	4489027	4489122	.	-	0	Parent=Os01t0184500-01
Chr01	irgsp1_rep	CDS	4488719	4488907	.	-	0	Parent=Os01t0184500-01
Chr01	irgsp1_rep	CDS	4488489	4488629	.	-	0	Parent=Os01t0184500-01
Chr01	irgsp1_rep	CDS	4488060	4488200	.	-	0	Parent=Os01t0184500-01
Chr01	irgsp1_rep	CDS	4487636	4487778	.	-	0	Parent=Os01t0184500-01
Chr01	irgsp1_rep	CDS	4487108	4487237	.	-	1	Parent=Os01t0184500-01
Chr01	irgsp1_rep	CDS	4486949	4486997	.	-	0	Parent=Os01t0184500-01
Chr01	irgsp1_rep	CDS	4485972	4486450	.	-	2	Parent=Os01t0184500-01
Chr01	irgsp1_rep	three_prime_UTR	4485764	4485971	.	-	.	Parent=Os01t0184500-01
Chr01	irgsp1_rep	mRNA	4493365	4495145	.	+	.	ID=Os01t0184700-01;Name=Os01t0184700-01;Locus_id=Os01g0184700;Note=Conserved hypothetical protein.;Transcript_evidence=AK061353 (DDBJ%2C Best hit);ORF_evidence=A2WLG9 (UniProt);NIAS_FLcDNA=006-303-G06;TENOR=Os01t0184700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	4493365	4493365	.	+	.	Parent=Os01t0184700-01
Chr01	irgsp1_rep	CDS	4493366	4493768	.	+	0	Parent=Os01t0184700-01
Chr01	irgsp1_rep	CDS	4494267	4494466	.	+	2	Parent=Os01t0184700-01
Chr01	irgsp1_rep	three_prime_UTR	4494467	4495145	.	+	.	Parent=Os01t0184700-01
Chr01	irgsp1_rep	mRNA	4494615	4497597	.	-	.	ID=Os01t0184800-01;Name=Os01t0184800-01;Locus_id=Os01g0184800;Note=Thioredoxin fold domain containing protein.;Transcript_evidence=AK073377 (DDBJ%2C Best hit),AK102544 (DDBJ%2C Best hit);ORF_evidence=B4FF90 (UniProt);InterPro=Thioredoxin-like fold (IPR012336),Phosducin%2C thioredoxin-like domain (IPR024253);NIAS_FLcDNA=J033028G17,J033096N05;TENOR=Os01t0184800-01
Chr01	irgsp1_rep	five_prime_UTR	4497540	4497597	.	-	.	Parent=Os01t0184800-01
Chr01	irgsp1_rep	CDS	4497298	4497539	.	-	0	Parent=Os01t0184800-01
Chr01	irgsp1_rep	CDS	4496860	4497003	.	-	1	Parent=Os01t0184800-01
Chr01	irgsp1_rep	CDS	4495538	4495746	.	-	1	Parent=Os01t0184800-01
Chr01	irgsp1_rep	CDS	4494868	4495028	.	-	2	Parent=Os01t0184800-01
Chr01	irgsp1_rep	three_prime_UTR	4494615	4494867	.	-	.	Parent=Os01t0184800-01
Chr01	irgsp1_rep	mRNA	4497719	4504377	.	+	.	ID=Os01t0184900-01;Name=Os01t0184900-01;Locus_id=Os01g0184900;Oryzabase Gene Symbol Synonym(s)=BIP104;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 104%2C BRI1-interacting protein 104%2C brassinosteroid receptor kinase-interacting protein 104;Note=Similar to SSRP1 protein.;Transcript_evidence=AK066832 (DDBJ%2C Best hit);ORF_evidence=Q9LGR0 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=High mobility group%2C HMG1/HMG2 (IPR000910),Structure-specific recognition protein (IPR000969),High mobility group%2C superfamily (IPR009071);NIAS_FLcDNA=J013075A09;Oryzabase=13687;Expression=AK066832;TENOR=Os01t0184900-01;KEGG=Os01t0184900-01
Chr01	irgsp1_rep	five_prime_UTR	4497719	4497922	.	+	.	Parent=Os01t0184900-01
Chr01	irgsp1_rep	CDS	4497923	4497976	.	+	0	Parent=Os01t0184900-01
Chr01	irgsp1_rep	CDS	4498719	4498904	.	+	0	Parent=Os01t0184900-01
Chr01	irgsp1_rep	CDS	4499898	4500003	.	+	0	Parent=Os01t0184900-01
Chr01	irgsp1_rep	CDS	4500080	4500216	.	+	2	Parent=Os01t0184900-01
Chr01	irgsp1_rep	CDS	4500341	4500424	.	+	0	Parent=Os01t0184900-01
Chr01	irgsp1_rep	CDS	4500498	4500589	.	+	0	Parent=Os01t0184900-01
Chr01	irgsp1_rep	CDS	4500729	4500837	.	+	1	Parent=Os01t0184900-01
Chr01	irgsp1_rep	CDS	4500944	4501030	.	+	0	Parent=Os01t0184900-01
Chr01	irgsp1_rep	CDS	4501153	4501245	.	+	0	Parent=Os01t0184900-01
Chr01	irgsp1_rep	CDS	4502144	4502341	.	+	0	Parent=Os01t0184900-01
Chr01	irgsp1_rep	CDS	4502481	4502632	.	+	0	Parent=Os01t0184900-01
Chr01	irgsp1_rep	CDS	4502724	4502874	.	+	1	Parent=Os01t0184900-01
Chr01	irgsp1_rep	CDS	4502975	4503073	.	+	0	Parent=Os01t0184900-01
Chr01	irgsp1_rep	CDS	4503159	4503326	.	+	0	Parent=Os01t0184900-01
Chr01	irgsp1_rep	CDS	4503624	4503702	.	+	0	Parent=Os01t0184900-01
Chr01	irgsp1_rep	CDS	4503870	4504000	.	+	2	Parent=Os01t0184900-01
Chr01	irgsp1_rep	three_prime_UTR	4504001	4504377	.	+	.	Parent=Os01t0184900-01
Chr01	irgsp1_rep	mRNA	4497771	4504384	.	+	.	ID=Os01t0184900-02;Name=Os01t0184900-02;Locus_id=Os01g0184900;Oryzabase Gene Symbol Synonym(s)=BIP104;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 104%2C BRI1-interacting protein 104%2C brassinosteroid receptor kinase-interacting protein 104;Note=Similar to SSRP1 protein.;Transcript_evidence=AK068959 (DDBJ%2C Best hit);ORF_evidence=Q9LGR0 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=High mobility group%2C HMG1/HMG2 (IPR000910),Structure-specific recognition protein (IPR000969),High mobility group%2C superfamily (IPR009071);NIAS_FLcDNA=J023002O22;Oryzabase=13687;Expression=AK068959;TENOR=Os01t0184900-02;KEGG=Os01t0184900-02
Chr01	irgsp1_rep	five_prime_UTR	4497771	4497922	.	+	.	Parent=Os01t0184900-02
Chr01	irgsp1_rep	CDS	4497923	4497976	.	+	0	Parent=Os01t0184900-02
Chr01	irgsp1_rep	CDS	4498719	4498904	.	+	0	Parent=Os01t0184900-02
Chr01	irgsp1_rep	CDS	4499898	4500003	.	+	0	Parent=Os01t0184900-02
Chr01	irgsp1_rep	CDS	4500080	4500216	.	+	2	Parent=Os01t0184900-02
Chr01	irgsp1_rep	CDS	4500341	4500424	.	+	0	Parent=Os01t0184900-02
Chr01	irgsp1_rep	CDS	4500498	4500589	.	+	0	Parent=Os01t0184900-02
Chr01	irgsp1_rep	CDS	4500729	4500837	.	+	1	Parent=Os01t0184900-02
Chr01	irgsp1_rep	CDS	4500944	4501030	.	+	0	Parent=Os01t0184900-02
Chr01	irgsp1_rep	CDS	4501153	4501245	.	+	0	Parent=Os01t0184900-02
Chr01	irgsp1_rep	CDS	4502144	4502341	.	+	0	Parent=Os01t0184900-02
Chr01	irgsp1_rep	CDS	4502481	4502632	.	+	0	Parent=Os01t0184900-02
Chr01	irgsp1_rep	CDS	4502724	4502874	.	+	1	Parent=Os01t0184900-02
Chr01	irgsp1_rep	CDS	4502975	4503073	.	+	0	Parent=Os01t0184900-02
Chr01	irgsp1_rep	CDS	4503159	4503326	.	+	0	Parent=Os01t0184900-02
Chr01	irgsp1_rep	CDS	4503624	4503702	.	+	0	Parent=Os01t0184900-02
Chr01	irgsp1_rep	CDS	4503870	4504000	.	+	2	Parent=Os01t0184900-02
Chr01	irgsp1_rep	three_prime_UTR	4504001	4504384	.	+	.	Parent=Os01t0184900-02
Chr01	irgsp1_rep	mRNA	4504620	4505060	.	-	.	ID=Os01t0185000-00;Name=Os01t0185000-00;Locus_id=Os01g0185000;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q69TJ5 (UniProt);TENOR=Os01t0185000-00;KEGG=Os01t0185000-00
Chr01	irgsp1_rep	CDS	4504620	4505060	.	-	0	Parent=Os01t0185000-00
Chr01	irgsp1_rep	mRNA	4509219	4512681	.	+	.	ID=Os01t0185100-00;Name=Os01t0185100-00;Locus_id=Os01g0185100;Note=Similar to predicted protein.;Transcript_evidence=BT065044 (DDBJ);ORF_evidence=Q9LGQ8 (UniProt);InterPro=Protein of unknown function DUF1664 (IPR012458);TENOR=Os01t0185100-00;KEGG=Os01t0185100-00
Chr01	irgsp1_rep	five_prime_UTR	4509219	4509282	.	+	.	Parent=Os01t0185100-00
Chr01	irgsp1_rep	five_prime_UTR	4509391	4509526	.	+	.	Parent=Os01t0185100-00
Chr01	irgsp1_rep	CDS	4509527	4509614	.	+	0	Parent=Os01t0185100-00
Chr01	irgsp1_rep	CDS	4510750	4510817	.	+	2	Parent=Os01t0185100-00
Chr01	irgsp1_rep	CDS	4511277	4511378	.	+	0	Parent=Os01t0185100-00
Chr01	irgsp1_rep	CDS	4511525	4511614	.	+	0	Parent=Os01t0185100-00
Chr01	irgsp1_rep	CDS	4511759	4511833	.	+	0	Parent=Os01t0185100-00
Chr01	irgsp1_rep	CDS	4511935	4511967	.	+	0	Parent=Os01t0185100-00
Chr01	irgsp1_rep	CDS	4512544	4512681	.	+	0	Parent=Os01t0185100-00
Chr01	irgsp1_rep	mRNA	4518455	4520604	.	-	.	ID=Os01t0185200-01;Name=Os01t0185200-01;Locus_id=Os01g0185200;Oryzabase Gene Name Synonym(s)=Glutaminyl-tRNA synthetase;Note=Similar to glutaminyl-tRNA synthetase.;Transcript_evidence=AK062984 (DDBJ%2C Best hit),AK105222 (DDBJ%2C Best hit);ORF_evidence=NP_001152305.1 (RefSeq);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: glutaminyl-tRNA aminoacylation (GO:0006425),Biological Process: tRNA aminoacylation (GO:0043039),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: glutamine-tRNA ligase activity (GO:0004819),Molecular Function: ATP binding (GO:0005524),Molecular Function: ligase activity%2C forming aminoacyl-tRNA and related compounds (GO:0016876);InterPro=Glutamyl/glutaminyl-tRNA synthetase%2C class Ib (IPR000924),Glutaminyl-tRNA synthetase%2C class Ib%2C non-specific RNA-binding domain 2 (IPR007638),Glutaminyl-tRNA synthetase%2C class Ib%2C non-specific RNA-binding domain%2C N-terminal (IPR007639);NIAS_FLcDNA=001-109-F07,001-110-E10;Oryzabase=21861;TENOR=Os01t0185200-01
Chr01	irgsp1_rep	five_prime_UTR	4520453	4520604	.	-	.	Parent=Os01t0185200-01
Chr01	irgsp1_rep	CDS	4520309	4520452	.	-	0	Parent=Os01t0185200-01
Chr01	irgsp1_rep	CDS	4519499	4519546	.	-	0	Parent=Os01t0185200-01
Chr01	irgsp1_rep	CDS	4519323	4519394	.	-	0	Parent=Os01t0185200-01
Chr01	irgsp1_rep	CDS	4519087	4519186	.	-	0	Parent=Os01t0185200-01
Chr01	irgsp1_rep	CDS	4518760	4518855	.	-	2	Parent=Os01t0185200-01
Chr01	irgsp1_rep	CDS	4518609	4518670	.	-	2	Parent=Os01t0185200-01
Chr01	irgsp1_rep	CDS	4518455	4518523	.	-	0	Parent=Os01t0185200-01
Chr01	irgsp1_rep	mRNA	4519982	4520600	.	-	.	ID=Os01t0185200-02;Name=Os01t0185200-02;Locus_id=Os01g0185200;Oryzabase Gene Name Synonym(s)=Glutaminyl-tRNA synthetase;Note=Similar to glutaminyl-tRNA synthetase.;Transcript_evidence=AK111284 (DDBJ%2C Best hit);ORF_evidence=NP_001152305.1 (RefSeq);NIAS_FLcDNA=002-180-H07;Oryzabase=21861;Expression=AK111284;TENOR=Os01t0185200-02;KEGG=Os01t0185200-02 (EC:6.1.1.18)
Chr01	irgsp1_rep	five_prime_UTR	4520453	4520600	.	-	.	Parent=Os01t0185200-02
Chr01	irgsp1_rep	CDS	4520297	4520452	.	-	0	Parent=Os01t0185200-02
Chr01	irgsp1_rep	three_prime_UTR	4519982	4520296	.	-	.	Parent=Os01t0185200-02
Chr01	irgsp1_rep	mRNA	4514356	4520545	.	-	.	ID=Os01t0185200-03;Name=Os01t0185200-03;Locus_id=Os01g0185200;Oryzabase Gene Name Synonym(s)=Glutaminyl-tRNA synthetase;Note=Glutaminyl-tRNA synthetase%2C class Ic domain containing protein.;Transcript_evidence=AK065125 (DDBJ%2C Best hit);ORF_evidence=NP_001152305.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: glutaminyl-tRNA aminoacylation (GO:0006425),Biological Process: tRNA aminoacylation (GO:0043039),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: glutamine-tRNA ligase activity (GO:0004819),Molecular Function: ATP binding (GO:0005524),Molecular Function: ligase activity%2C forming aminoacyl-tRNA and related compounds (GO:0016876);InterPro=Glutamyl/glutaminyl-tRNA synthetase%2C class Ib (IPR000924),Aminoacyl-tRNA synthetase%2C class I%2C conserved site (IPR001412),Glutaminyl-tRNA synthetase%2C class Ib (IPR004514),Glutaminyl-tRNA synthetase%2C class Ib%2C non-specific RNA-binding domain 2 (IPR007638),Glutaminyl-tRNA synthetase%2C class Ib%2C non-specific RNA-binding domain%2C N-terminal (IPR007639),Ribosomal protein L25/Gln-tRNA synthetase%2C anti-codon-binding domain (IPR011035),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Ribosomal protein L25/Gln-tRNA synthetase%2C beta-barrel domain (IPR020056),Glutamyl/glutaminyl-tRNA synthetase%2C class Ib%2C catalytic domain (IPR020058),Glutamyl/glutaminyl-tRNA synthetase%2C class Ib%2C anti-codon binding domain (IPR020059),Glutamyl/glutaminyl-tRNA synthetase%2C class Ib%2C alpha-bundle domain (IPR020061);NIAS_FLcDNA=J013001P05;Oryzabase=21861;Expression=AK065125;TENOR=Os01t0185200-03;KEGG=Os01t0185200-03 (EC:6.1.1.18)
Chr01	irgsp1_rep	five_prime_UTR	4520453	4520545	.	-	.	Parent=Os01t0185200-03
Chr01	irgsp1_rep	CDS	4520309	4520452	.	-	0	Parent=Os01t0185200-03
Chr01	irgsp1_rep	CDS	4519499	4519546	.	-	0	Parent=Os01t0185200-03
Chr01	irgsp1_rep	CDS	4519323	4519394	.	-	0	Parent=Os01t0185200-03
Chr01	irgsp1_rep	CDS	4519087	4519186	.	-	0	Parent=Os01t0185200-03
Chr01	irgsp1_rep	CDS	4518760	4518855	.	-	2	Parent=Os01t0185200-03
Chr01	irgsp1_rep	CDS	4518609	4518670	.	-	2	Parent=Os01t0185200-03
Chr01	irgsp1_rep	CDS	4518422	4518523	.	-	0	Parent=Os01t0185200-03
Chr01	irgsp1_rep	CDS	4518248	4518340	.	-	0	Parent=Os01t0185200-03
Chr01	irgsp1_rep	CDS	4517781	4517933	.	-	0	Parent=Os01t0185200-03
Chr01	irgsp1_rep	CDS	4517635	4517690	.	-	0	Parent=Os01t0185200-03
Chr01	irgsp1_rep	CDS	4517058	4517235	.	-	1	Parent=Os01t0185200-03
Chr01	irgsp1_rep	CDS	4516740	4516937	.	-	0	Parent=Os01t0185200-03
Chr01	irgsp1_rep	CDS	4516563	4516661	.	-	0	Parent=Os01t0185200-03
Chr01	irgsp1_rep	CDS	4516355	4516486	.	-	0	Parent=Os01t0185200-03
Chr01	irgsp1_rep	CDS	4516133	4516269	.	-	0	Parent=Os01t0185200-03
Chr01	irgsp1_rep	CDS	4515860	4515959	.	-	1	Parent=Os01t0185200-03
Chr01	irgsp1_rep	CDS	4515678	4515773	.	-	0	Parent=Os01t0185200-03
Chr01	irgsp1_rep	CDS	4515442	4515542	.	-	0	Parent=Os01t0185200-03
Chr01	irgsp1_rep	CDS	4515225	4515330	.	-	1	Parent=Os01t0185200-03
Chr01	irgsp1_rep	CDS	4515027	4515116	.	-	0	Parent=Os01t0185200-03
Chr01	irgsp1_rep	CDS	4514790	4514919	.	-	0	Parent=Os01t0185200-03
Chr01	irgsp1_rep	CDS	4514604	4514701	.	-	2	Parent=Os01t0185200-03
Chr01	irgsp1_rep	three_prime_UTR	4514356	4514603	.	-	.	Parent=Os01t0185200-03
Chr01	irgsp1_rep	mRNA	4527986	4528971	.	-	.	ID=Os01t0185250-01;Name=Os01t0185250-01;Locus_id=Os01g0185250;Note=Hypothetical gene.;Transcript_evidence=AK107836 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-133-H05;Expression=AK107836;TENOR=Os01t0185250-01;KEGG=Os01t0185250-01
Chr01	irgsp1_rep	five_prime_UTR	4528488	4528971	.	-	.	Parent=Os01t0185250-01
Chr01	irgsp1_rep	CDS	4528263	4528487	.	-	0	Parent=Os01t0185250-01
Chr01	irgsp1_rep	three_prime_UTR	4527986	4528262	.	-	.	Parent=Os01t0185250-01
Chr01	irgsp1_rep	mRNA	4528237	4532862	.	+	.	ID=Os01t0185300-01;Name=Os01t0185300-01;Locus_id=Os01g0185300;CGSNL Gene Symbol=AT9;CGSNL Gene Name=ACYLTRANSFERASE 9;Oryzabase Gene Symbol Synonym(s)=OsAT9%2C OsAt9;Oryzabase Gene Name Synonym(s)=acyltransferase 9;Note=Transferase family protein.;Transcript_evidence=AK065131 (DDBJ%2C Best hit),AK098922 (DDBJ%2C Best hit);ORF_evidence=B6TJ78 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J013001P14,J013002O23;Oryzabase=11741;TENOR=Os01t0185300-01
Chr01	irgsp1_rep	five_prime_UTR	4528237	4528308	.	+	.	Parent=Os01t0185300-01
Chr01	irgsp1_rep	CDS	4528309	4528740	.	+	0	Parent=Os01t0185300-01
Chr01	irgsp1_rep	CDS	4531776	4532603	.	+	0	Parent=Os01t0185300-01
Chr01	irgsp1_rep	three_prime_UTR	4532604	4532862	.	+	.	Parent=Os01t0185300-01
Chr01	irgsp1_rep	mRNA	4531773	4532859	.	+	.	ID=Os01t0185300-02;Name=Os01t0185300-02;Locus_id=Os01g0185300;CGSNL Gene Symbol=AT9;CGSNL Gene Name=ACYLTRANSFERASE 9;Oryzabase Gene Symbol Synonym(s)=OsAT9%2C OsAt9;Oryzabase Gene Name Synonym(s)=acyltransferase 9;Note=Similar to 3-N-debenzoyl-2-deoxytaxol N-benzoyltransferase.;Transcript_evidence=AK061343 (DDBJ%2C Best hit),AK104360 (DDBJ%2C Best hit);ORF_evidence=B6TJ78 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=006-303-E05,001-035-C03;Oryzabase=11741;Expression=AK061343;TENOR=Os01t0185300-02;KEGG=Os01t0185300-02
Chr01	irgsp1_rep	CDS	4531773	4532603	.	+	0	Parent=Os01t0185300-02
Chr01	irgsp1_rep	three_prime_UTR	4532604	4532859	.	+	.	Parent=Os01t0185300-02
Chr01	irgsp1_rep	mRNA	4531622	4532654	.	-	.	ID=Os01t0185350-01;Name=Os01t0185350-01;Locus_id=Os01g0185350;Note=Non-protein coding transcript.;Transcript_evidence=AK110554 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-168-C05;TENOR=Os01t0185350-01
Chr01	irgsp1_rep	exon	4531622	4532654	.	-	.	Parent=Os01t0185350-01
Chr01	irgsp1_rep	mRNA	4536009	4540065	.	+	.	ID=Os01t0185400-01;Name=Os01t0185400-01;Locus_id=Os01g0185400;Oryzabase Gene Symbol Synonym(s)=OsWD40-6;Note=WD40 repeat domain containing protein.;Transcript_evidence=AK112064 (DDBJ%2C Best hit);ORF_evidence=B9ETJ0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=001-115-E01;Oryzabase=10687;TENOR=Os01t0185400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	4536009	4536009	.	+	.	Parent=Os01t0185400-01
Chr01	irgsp1_rep	CDS	4536010	4536075	.	+	0	Parent=Os01t0185400-01
Chr01	irgsp1_rep	CDS	4536232	4536323	.	+	0	Parent=Os01t0185400-01
Chr01	irgsp1_rep	CDS	4537203	4537308	.	+	1	Parent=Os01t0185400-01
Chr01	irgsp1_rep	CDS	4537441	4537649	.	+	0	Parent=Os01t0185400-01
Chr01	irgsp1_rep	CDS	4538049	4538091	.	+	1	Parent=Os01t0185400-01
Chr01	irgsp1_rep	CDS	4538413	4538672	.	+	0	Parent=Os01t0185400-01
Chr01	irgsp1_rep	CDS	4538762	4539217	.	+	1	Parent=Os01t0185400-01
Chr01	irgsp1_rep	CDS	4539376	4539418	.	+	1	Parent=Os01t0185400-01
Chr01	irgsp1_rep	three_prime_UTR	4539419	4540065	.	+	.	Parent=Os01t0185400-01
Chr01	irgsp1_rep	mRNA	4542331	4546541	.	+	.	ID=Os01t0185500-00;Name=Os01t0185500-00;Locus_id=Os01g0185500;Note=Protein of unknown function DUF1637 domain containing protein.;Transcript_evidence=FP093547 (DDBJ);ORF_evidence=C8YZB2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: cysteamine dioxygenase activity (GO:0047800);InterPro=Cupin%2C RmlC-type (IPR011051),Cysteamine dioxygenase (IPR012864),RmlC-like jelly roll fold (IPR014710);TENOR=Os01t0185500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	4542331	4542402	.	+	.	Parent=Os01t0185500-00
Chr01	irgsp1_rep	CDS	4542403	4542646	.	+	0	Parent=Os01t0185500-00
Chr01	irgsp1_rep	CDS	4544503	4544621	.	+	2	Parent=Os01t0185500-00
Chr01	irgsp1_rep	CDS	4544728	4544866	.	+	0	Parent=Os01t0185500-00
Chr01	irgsp1_rep	CDS	4544957	4545178	.	+	2	Parent=Os01t0185500-00
Chr01	irgsp1_rep	CDS	4546094	4546212	.	+	2	Parent=Os01t0185500-00
Chr01	irgsp1_rep	three_prime_UTR	4546213	4546541	.	+	.	Parent=Os01t0185500-00
Chr01	irgsp1_rep	mRNA	4566304	4568589	.	+	.	ID=Os01t0185900-01;Name=Os01t0185900-01;Locus_id=Os01g0185900;CGSNL Gene Symbol=WRKY107;CGSNL Gene Name=WRKY GENE 107;Oryzabase Gene Symbol Synonym(s)=OsWRKY107;Note=Similar to WRKY 1 (Fragment).;Transcript_evidence=AK289240 (DDBJ%2C Best hit);ORF_evidence=B2KJ78 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);NIAS_FLcDNA=J100075H09;Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=9206;TENOR=Os01t0185900-01;KEGG=Os01t0185900-01
Chr01	irgsp1_rep	five_prime_UTR	4566304	4566421	.	+	.	Parent=Os01t0185900-01
Chr01	irgsp1_rep	CDS	4566422	4566481	.	+	0	Parent=Os01t0185900-01
Chr01	irgsp1_rep	CDS	4566597	4566671	.	+	0	Parent=Os01t0185900-01
Chr01	irgsp1_rep	CDS	4566760	4567332	.	+	0	Parent=Os01t0185900-01
Chr01	irgsp1_rep	CDS	4567438	4567551	.	+	0	Parent=Os01t0185900-01
Chr01	irgsp1_rep	CDS	4567676	4568377	.	+	0	Parent=Os01t0185900-01
Chr01	irgsp1_rep	three_prime_UTR	4568378	4568589	.	+	.	Parent=Os01t0185900-01
Chr01	irgsp1_rep	mRNA	4572565	4573271	.	-	.	ID=Os01t0186000-01;Name=Os01t0186000-01;Locus_id=Os01g0186000;CGSNL Gene Symbol=WRKY10;CGSNL Gene Name=WRKY GENE 10;Oryzabase Gene Symbol Synonym(s)=OsWRKY10;Oryzabase Gene Name Synonym(s)=Rice WRKY gene10;Note=Similar to WRKY transcription factor 10.;Transcript_evidence=AK109578 (DDBJ%2C Best hit);ORF_evidence=Q6IES1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);NIAS_FLcDNA=002-135-F06;Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6521;Expression=AK109578;TENOR=Os01t0186000-01;KEGG=Os01t0186000-01
Chr01	irgsp1_rep	five_prime_UTR	4573271	4573271	.	-	.	Parent=Os01t0186000-01
Chr01	irgsp1_rep	CDS	4572689	4573270	.	-	0	Parent=Os01t0186000-01
Chr01	irgsp1_rep	three_prime_UTR	4572565	4572688	.	-	.	Parent=Os01t0186000-01
Chr01	irgsp1_rep	mRNA	4581254	4584592	.	-	.	ID=Os01t0186200-01;Name=Os01t0186200-01;Locus_id=Os01g0186200;Note=Similar to Phototropin.;Transcript_evidence=AK109372 (DDBJ%2C Best hit);ORF_evidence=B8ADN0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: signal transduction (GO:0007165),Molecular Function: signal transducer activity (GO:0004871);InterPro=PAS (IPR000014),PAC motif (IPR001610),PAS fold (IPR013767);NIAS_FLcDNA=006-208-A01;Expression=AK109372;TENOR=Os01t0186200-01;KEGG=Os01t0186200-01
Chr01	irgsp1_rep	five_prime_UTR	4584448	4584592	.	-	.	Parent=Os01t0186200-01
Chr01	irgsp1_rep	CDS	4583889	4584447	.	-	0	Parent=Os01t0186200-01
Chr01	irgsp1_rep	CDS	4582970	4583177	.	-	2	Parent=Os01t0186200-01
Chr01	irgsp1_rep	CDS	4582778	4582842	.	-	1	Parent=Os01t0186200-01
Chr01	irgsp1_rep	CDS	4582170	4582249	.	-	2	Parent=Os01t0186200-01
Chr01	irgsp1_rep	CDS	4582022	4582077	.	-	0	Parent=Os01t0186200-01
Chr01	irgsp1_rep	CDS	4581864	4581927	.	-	1	Parent=Os01t0186200-01
Chr01	irgsp1_rep	CDS	4581480	4581635	.	-	0	Parent=Os01t0186200-01
Chr01	irgsp1_rep	three_prime_UTR	4581254	4581479	.	-	.	Parent=Os01t0186200-01
Chr01	irgsp1_rep	mRNA	4581256	4584537	.	-	.	ID=Os01t0186200-02;Name=Os01t0186200-02;Locus_id=Os01g0186200;Note=Hypothetical conserved gene.;Transcript_evidence=AK111679 (DDBJ%2C Best hit);ORF_evidence=B8ADN0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: signal transduction (GO:0007165),Molecular Function: signal transducer activity (GO:0004871);InterPro=PAS (IPR000014),PAS fold (IPR013767);NIAS_FLcDNA=J013161F02;Expression=AK111679;TENOR=Os01t0186200-02;KEGG=Os01t0186200-02
Chr01	irgsp1_rep	five_prime_UTR	4584448	4584537	.	-	.	Parent=Os01t0186200-02
Chr01	irgsp1_rep	CDS	4583889	4584447	.	-	0	Parent=Os01t0186200-02
Chr01	irgsp1_rep	CDS	4583165	4583190	.	-	2	Parent=Os01t0186200-02
Chr01	irgsp1_rep	three_prime_UTR	4582970	4583164	.	-	.	Parent=Os01t0186200-02
Chr01	irgsp1_rep	three_prime_UTR	4582778	4582842	.	-	.	Parent=Os01t0186200-02
Chr01	irgsp1_rep	three_prime_UTR	4582170	4582249	.	-	.	Parent=Os01t0186200-02
Chr01	irgsp1_rep	three_prime_UTR	4582022	4582077	.	-	.	Parent=Os01t0186200-02
Chr01	irgsp1_rep	three_prime_UTR	4581864	4581927	.	-	.	Parent=Os01t0186200-02
Chr01	irgsp1_rep	three_prime_UTR	4581256	4581635	.	-	.	Parent=Os01t0186200-02
Chr01	irgsp1_rep	mRNA	4586170	4591083	.	+	.	ID=Os01t0186400-01;Name=Os01t0186400-01;Locus_id=Os01g0186400;Note=Hypothetical conserved gene.;Transcript_evidence=AK288724 (DDBJ%2C Best hit);ORF_evidence=Q5VRX0 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087);NIAS_FLcDNA=J090063A16;TENOR=Os01t0186400-01;KEGG=Os01t0186400-01
Chr01	irgsp1_rep	five_prime_UTR	4586170	4587085	.	+	.	Parent=Os01t0186400-01
Chr01	irgsp1_rep	CDS	4587086	4587835	.	+	0	Parent=Os01t0186400-01
Chr01	irgsp1_rep	three_prime_UTR	4587836	4591083	.	+	.	Parent=Os01t0186400-01
Chr01	irgsp1_rep	mRNA	4614891	4615825	.	+	.	ID=Os01t0186600-01;Name=Os01t0186600-01;Locus_id=Os01g0186600;Note=Conserved hypothetical protein.;Transcript_evidence=AK108138 (DDBJ%2C Best hit);ORF_evidence=A2WLI4 (UniProt);NIAS_FLcDNA=002-139-E05;Expression=AK108138;TENOR=Os01t0186600-01;KEGG=Os01t0186600-01
Chr01	irgsp1_rep	five_prime_UTR	4614891	4614953	.	+	.	Parent=Os01t0186600-01
Chr01	irgsp1_rep	CDS	4614954	4615580	.	+	0	Parent=Os01t0186600-01
Chr01	irgsp1_rep	three_prime_UTR	4615581	4615825	.	+	.	Parent=Os01t0186600-01
Chr01	irgsp1_rep	mRNA	4621925	4631262	.	-	.	ID=Os01t0186700-01;Name=Os01t0186700-01;Locus_id=Os01g0186700;Note=Similar to Protein kinase GhCLK1 (Fragment).;Transcript_evidence=AK121977 (DDBJ%2C Best hit);ORF_evidence=B6U4A0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),AGC-kinase%2C C-terminal (IPR000961),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Protein kinase%2C C-terminal (IPR017892);NIAS_FLcDNA=J033108J21;Expression=AK121977;TENOR=Os01t0186700-01;KEGG=Os01t0186700-01 (EC:2.7.11.1)
Chr01	irgsp1_rep	five_prime_UTR	4631237	4631262	.	-	.	Parent=Os01t0186700-01
Chr01	irgsp1_rep	CDS	4631025	4631236	.	-	0	Parent=Os01t0186700-01
Chr01	irgsp1_rep	CDS	4629427	4629601	.	-	1	Parent=Os01t0186700-01
Chr01	irgsp1_rep	CDS	4629232	4629315	.	-	0	Parent=Os01t0186700-01
Chr01	irgsp1_rep	CDS	4628376	4628617	.	-	0	Parent=Os01t0186700-01
Chr01	irgsp1_rep	CDS	4627791	4628034	.	-	1	Parent=Os01t0186700-01
Chr01	irgsp1_rep	CDS	4627526	4627605	.	-	0	Parent=Os01t0186700-01
Chr01	irgsp1_rep	CDS	4627356	4627440	.	-	1	Parent=Os01t0186700-01
Chr01	irgsp1_rep	CDS	4626430	4626561	.	-	0	Parent=Os01t0186700-01
Chr01	irgsp1_rep	CDS	4626224	4626337	.	-	0	Parent=Os01t0186700-01
Chr01	irgsp1_rep	CDS	4623238	4623282	.	-	0	Parent=Os01t0186700-01
Chr01	irgsp1_rep	CDS	4622722	4622803	.	-	0	Parent=Os01t0186700-01
Chr01	irgsp1_rep	CDS	4622469	4622519	.	-	2	Parent=Os01t0186700-01
Chr01	irgsp1_rep	CDS	4622291	4622379	.	-	2	Parent=Os01t0186700-01
Chr01	irgsp1_rep	three_prime_UTR	4621925	4622290	.	-	.	Parent=Os01t0186700-01
Chr01	irgsp1_rep	mRNA	4646434	4648130	.	+	.	ID=Os01t0186900-01;Name=Os01t0186900-01;Locus_id=Os01g0186900;Note=Similar to cDNA clone:001-117-G12%2C full insert sequence.;Transcript_evidence=AK105331 (DDBJ%2C Best hit);ORF_evidence=B7EXU7 (UniProt);NIAS_FLcDNA=001-118-C05;Expression=AK105331;TENOR=Os01t0186900-01;KEGG=Os01t0186900-01
Chr01	irgsp1_rep	five_prime_UTR	4646434	4646540	.	+	.	Parent=Os01t0186900-01
Chr01	irgsp1_rep	CDS	4646541	4647313	.	+	0	Parent=Os01t0186900-01
Chr01	irgsp1_rep	CDS	4647829	4647964	.	+	1	Parent=Os01t0186900-01
Chr01	irgsp1_rep	three_prime_UTR	4647965	4648130	.	+	.	Parent=Os01t0186900-01
Chr01	irgsp1_rep	mRNA	4646434	4647956	.	+	.	ID=Os01t0186900-02;Name=Os01t0186900-02;Locus_id=Os01g0186900;Note=Similar to transposon protein CACTA%2C En/Spm sub-class.;Transcript_evidence=AK105323 (DDBJ%2C Best hit);ORF_evidence=B6SGX9 (UniProt);NIAS_FLcDNA=001-117-G12;Expression=AK105323;TENOR=Os01t0186900-02;KEGG=Os01t0186900-02
Chr01	irgsp1_rep	five_prime_UTR	4646434	4646540	.	+	.	Parent=Os01t0186900-02
Chr01	irgsp1_rep	CDS	4646541	4647902	.	+	0	Parent=Os01t0186900-02
Chr01	irgsp1_rep	three_prime_UTR	4647903	4647956	.	+	.	Parent=Os01t0186900-02
Chr01	irgsp1_rep	mRNA	4646752	4647956	.	+	.	ID=Os01t0186900-03;Name=Os01t0186900-03;Locus_id=Os01g0186900;Note=Similar to cDNA clone:001-117-G12%2C full insert sequence.;Transcript_evidence=AK106168 (DDBJ%2C Best hit);ORF_evidence=B7EXU7 (UniProt);NIAS_FLcDNA=001-208-B09;Expression=AK106168;TENOR=Os01t0186900-03;KEGG=Os01t0186900-03
Chr01	irgsp1_rep	five_prime_UTR	4646752	4646753	.	+	.	Parent=Os01t0186900-03
Chr01	irgsp1_rep	CDS	4646754	4647902	.	+	0	Parent=Os01t0186900-03
Chr01	irgsp1_rep	three_prime_UTR	4647903	4647956	.	+	.	Parent=Os01t0186900-03
Chr01	irgsp1_rep	mRNA	4646844	4647917	.	-	.	ID=Os01t0186950-00;Name=Os01t0186950-00;Locus_id=Os01g0186950;Note=Hypothetical protein.;Transcript_evidence=tplb0058c08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0186950-00
Chr01	irgsp1_rep	five_prime_UTR	4647914	4647917	.	-	.	Parent=Os01t0186950-00
Chr01	irgsp1_rep	CDS	4647548	4647913	.	-	0	Parent=Os01t0186950-00
Chr01	irgsp1_rep	three_prime_UTR	4646844	4647547	.	-	.	Parent=Os01t0186950-00
Chr01	irgsp1_rep	mRNA	4650156	4651884	.	+	.	ID=Os01t0187000-01;Name=Os01t0187000-01;Locus_id=Os01g0187000;Note=Conserved hypothetical protein.;Transcript_evidence=AK064094 (DDBJ%2C Best hit);ORF_evidence=B8ADN3 (UniProt);NIAS_FLcDNA=002-100-E12;Expression=AK064094;TENOR=Os01t0187000-01;KEGG=Os01t0187000-01
Chr01	irgsp1_rep	five_prime_UTR	4650156	4650194	.	+	.	Parent=Os01t0187000-01
Chr01	irgsp1_rep	CDS	4650195	4650713	.	+	0	Parent=Os01t0187000-01
Chr01	irgsp1_rep	CDS	4651141	4651464	.	+	0	Parent=Os01t0187000-01
Chr01	irgsp1_rep	three_prime_UTR	4651465	4651884	.	+	.	Parent=Os01t0187000-01
Chr01	irgsp1_rep	mRNA	4665786	4667062	.	+	.	ID=Os01t0187200-01;Name=Os01t0187200-01;Locus_id=Os01g0187200;RAP-DB Gene Symbol Synonym(s)=OsmiR156b%2C OsmiR156c;Note=Primary microRNA of OsmiR156b and OsmiR156c%3B Target gene(s): SPL (Squamosa Promoter binding protein Like) gene family (Os07g0505200%2C Os02g0139400%2C Os01g0922600%2C Os08g0509600%2C Os08g0531600%2C Os09g0491532%2C Os09g0507100%2C Os02g0174100%2C Os06g0663500%2C Os06g0703500%2C Os04g0551500)%2C Various developmental processes%2C especially flower development;Transcript_evidence=AK110797;ORF_evidence=NONE;NIAS_FLcDNA=002-171-D11;Manual Curation=November 16%2C 2017;Literature_PMID=16861571;TENOR=Os01t0187200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	exon	4665786	4667062	.	+	.	Parent=Os01t0187200-01
Chr01	irgsp1_rep	mRNA	4667309	4669037	.	+	.	ID=Os01t0187300-01;Name=Os01t0187300-01;Locus_id=Os01g0187300;Note=Hypothetical conserved gene.;Transcript_evidence=AK064460 (DDBJ%2C Best hit);ORF_evidence=B8ADN6 (UniProt);NIAS_FLcDNA=002-110-G04;Expression=AK064460;TENOR=Os01t0187300-01;KEGG=Os01t0187300-01
Chr01	irgsp1_rep	five_prime_UTR	4667309	4668314	.	+	.	Parent=Os01t0187300-01
Chr01	irgsp1_rep	CDS	4668315	4668370	.	+	0	Parent=Os01t0187300-01
Chr01	irgsp1_rep	CDS	4668595	4668700	.	+	1	Parent=Os01t0187300-01
Chr01	irgsp1_rep	three_prime_UTR	4668701	4669037	.	+	.	Parent=Os01t0187300-01
Chr01	irgsp1_rep	mRNA	4673221	4674337	.	-	.	ID=Os01t0187350-00;Name=Os01t0187350-00;Locus_id=Os01g0187350;Note=Hypothetical gene.;Transcript_evidence=BT063600 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0187350-00;KEGG=Os01t0187350-00
Chr01	irgsp1_rep	five_prime_UTR	4674337	4674337	.	-	.	Parent=Os01t0187350-00
Chr01	irgsp1_rep	CDS	4673530	4674336	.	-	0	Parent=Os01t0187350-00
Chr01	irgsp1_rep	three_prime_UTR	4673221	4673529	.	-	.	Parent=Os01t0187350-00
Chr01	irgsp1_rep	mRNA	4673407	4684765	.	+	.	ID=Os01t0187400-01;Name=Os01t0187400-01;Locus_id=Os01g0187400;Note=Similar to glycine-rich protein.;Transcript_evidence=AK099852 (DDBJ%2C Best hit);ORF_evidence=XP_002873528.1 (RefSeq);NIAS_FLcDNA=J013110D09;Expression=AK099852;TENOR=Os01t0187400-01;KEGG=Os01t0187400-01
Chr01	irgsp1_rep	five_prime_UTR	4673407	4673580	.	+	.	Parent=Os01t0187400-01
Chr01	irgsp1_rep	CDS	4673581	4674413	.	+	0	Parent=Os01t0187400-01
Chr01	irgsp1_rep	CDS	4675274	4675389	.	+	1	Parent=Os01t0187400-01
Chr01	irgsp1_rep	CDS	4675694	4675902	.	+	2	Parent=Os01t0187400-01
Chr01	irgsp1_rep	CDS	4676953	4677072	.	+	0	Parent=Os01t0187400-01
Chr01	irgsp1_rep	CDS	4677185	4677313	.	+	0	Parent=Os01t0187400-01
Chr01	irgsp1_rep	CDS	4677394	4677519	.	+	0	Parent=Os01t0187400-01
Chr01	irgsp1_rep	CDS	4678454	4678509	.	+	0	Parent=Os01t0187400-01
Chr01	irgsp1_rep	CDS	4678608	4678707	.	+	1	Parent=Os01t0187400-01
Chr01	irgsp1_rep	CDS	4678798	4678915	.	+	0	Parent=Os01t0187400-01
Chr01	irgsp1_rep	CDS	4679332	4679541	.	+	2	Parent=Os01t0187400-01
Chr01	irgsp1_rep	CDS	4679630	4679942	.	+	2	Parent=Os01t0187400-01
Chr01	irgsp1_rep	CDS	4680539	4680632	.	+	1	Parent=Os01t0187400-01
Chr01	irgsp1_rep	CDS	4680854	4680962	.	+	0	Parent=Os01t0187400-01
Chr01	irgsp1_rep	CDS	4681243	4681514	.	+	2	Parent=Os01t0187400-01
Chr01	irgsp1_rep	CDS	4681597	4681724	.	+	0	Parent=Os01t0187400-01
Chr01	irgsp1_rep	CDS	4681832	4682066	.	+	1	Parent=Os01t0187400-01
Chr01	irgsp1_rep	CDS	4682570	4682758	.	+	0	Parent=Os01t0187400-01
Chr01	irgsp1_rep	CDS	4682845	4683128	.	+	0	Parent=Os01t0187400-01
Chr01	irgsp1_rep	CDS	4683218	4683398	.	+	1	Parent=Os01t0187400-01
Chr01	irgsp1_rep	CDS	4683486	4683728	.	+	0	Parent=Os01t0187400-01
Chr01	irgsp1_rep	CDS	4683904	4683986	.	+	0	Parent=Os01t0187400-01
Chr01	irgsp1_rep	CDS	4684119	4684266	.	+	1	Parent=Os01t0187400-01
Chr01	irgsp1_rep	three_prime_UTR	4684267	4684765	.	+	.	Parent=Os01t0187400-01
Chr01	irgsp1_rep	mRNA	4688171	4693114	.	+	.	ID=Os01t0187500-01;Name=Os01t0187500-01;Locus_id=Os01g0187500;Oryzabase Gene Symbol Synonym(s)=OsWD40-7;Note=WD40 repeat domain containing protein.;Transcript_evidence=AK111592 (DDBJ%2C Best hit);ORF_evidence=B8ADN8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J013092E23;Oryzabase=10688;TENOR=Os01t0187500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	4688171	4688281	.	+	.	Parent=Os01t0187500-01
Chr01	irgsp1_rep	CDS	4688282	4688692	.	+	0	Parent=Os01t0187500-01
Chr01	irgsp1_rep	CDS	4688996	4689151	.	+	0	Parent=Os01t0187500-01
Chr01	irgsp1_rep	three_prime_UTR	4689152	4689764	.	+	.	Parent=Os01t0187500-01
Chr01	irgsp1_rep	three_prime_UTR	4689881	4690129	.	+	.	Parent=Os01t0187500-01
Chr01	irgsp1_rep	three_prime_UTR	4690233	4690412	.	+	.	Parent=Os01t0187500-01
Chr01	irgsp1_rep	three_prime_UTR	4692605	4692705	.	+	.	Parent=Os01t0187500-01
Chr01	irgsp1_rep	three_prime_UTR	4692794	4693114	.	+	.	Parent=Os01t0187500-01
Chr01	irgsp1_rep	mRNA	4697238	4699036	.	-	.	ID=Os01t0187600-01;Name=Os01t0187600-01;Locus_id=Os01g0187600;CGSNL Gene Symbol=CKX1;CGSNL Gene Name=CYTOKININ  OXIDASE/DEHYDROGENASE 1;Oryzabase Gene Symbol Synonym(s)=OsCKX1;Oryzabase Gene Name Synonym(s)=cytokinin oxidase 1;Note=Similar to Cytokinin dehydrogenase 1.;Transcript_evidence=AK109624 (DDBJ%2C Best hit);ORF_evidence=Q0JQ12 (UniProt);GO=Biological Process: cytokinin metabolic process (GO:0009690),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: cytokinin dehydrogenase activity (GO:0019139),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Cytokinin dehydrogenase 1%2C FAD/cytokinin binding domain (IPR015345),FAD-linked oxidase-like%2C C-terminal (IPR016164),FAD-binding%2C type 2 (IPR016166);NIAS_FLcDNA=002-138-B07;Oryzabase=8392;TENOR=Os01t0187600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	4698411	4699036	.	-	.	Parent=Os01t0187600-01
Chr01	irgsp1_rep	CDS	4697700	4698410	.	-	0	Parent=Os01t0187600-01
Chr01	irgsp1_rep	three_prime_UTR	4697238	4697699	.	-	.	Parent=Os01t0187600-01
Chr01	irgsp1_rep	mRNA	4714730	4718746	.	-	.	ID=Os01t0187900-01;Name=Os01t0187900-01;Locus_id=Os01g0187900;CGSNL Gene Symbol=DLN4;CGSNL Gene Name=DLN REPRESSOR 4;Oryzabase Gene Symbol Synonym(s)=OsDLN4;Oryzabase Gene Name Synonym(s)=DLN repressor 4%2C DLN motif protein 4;Note=Similar to Transcription factor MYBS2.;Transcript_evidence=AK071611 (DDBJ%2C Best hit);ORF_evidence=NP_001149973.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=SANT domain%2C DNA binding (IPR001005),Zinc finger%2C CCHC-type (IPR001878),Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J023105I20;Oryzabase=23154;Expression=AK071611;TENOR=Os01t0187900-01;KEGG=Os01t0187900-01
Chr01	irgsp1_rep	five_prime_UTR	4718629	4718746	.	-	.	Parent=Os01t0187900-01
Chr01	irgsp1_rep	CDS	4718310	4718628	.	-	0	Parent=Os01t0187900-01
Chr01	irgsp1_rep	CDS	4715645	4715853	.	-	2	Parent=Os01t0187900-01
Chr01	irgsp1_rep	CDS	4714943	4715515	.	-	0	Parent=Os01t0187900-01
Chr01	irgsp1_rep	three_prime_UTR	4714730	4714942	.	-	.	Parent=Os01t0187900-01
Chr01	irgsp1_rep	mRNA	4726734	4731142	.	+	.	ID=Os01t0188100-01;Name=Os01t0188100-01;Locus_id=Os01g0188100;Note=Isopenicillin N synthase family protein.;Transcript_evidence=AK243477 (DDBJ%2C Best hit);ORF_evidence=B4FBV2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Isopenicillin N synthase (IPR002283),Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=J100072I17;TENOR=Os01t0188100-01;KEGG=Os01t0188100-01
Chr01	irgsp1_rep	five_prime_UTR	4726734	4726890	.	+	.	Parent=Os01t0188100-01
Chr01	irgsp1_rep	CDS	4726891	4726977	.	+	0	Parent=Os01t0188100-01
Chr01	irgsp1_rep	CDS	4728389	4728584	.	+	0	Parent=Os01t0188100-01
Chr01	irgsp1_rep	CDS	4728836	4728934	.	+	2	Parent=Os01t0188100-01
Chr01	irgsp1_rep	CDS	4729392	4729443	.	+	2	Parent=Os01t0188100-01
Chr01	irgsp1_rep	CDS	4729662	4729798	.	+	1	Parent=Os01t0188100-01
Chr01	irgsp1_rep	CDS	4729880	4729980	.	+	2	Parent=Os01t0188100-01
Chr01	irgsp1_rep	CDS	4730072	4730130	.	+	0	Parent=Os01t0188100-01
Chr01	irgsp1_rep	CDS	4730285	4730341	.	+	1	Parent=Os01t0188100-01
Chr01	irgsp1_rep	CDS	4730476	4730521	.	+	1	Parent=Os01t0188100-01
Chr01	irgsp1_rep	CDS	4730650	4730729	.	+	0	Parent=Os01t0188100-01
Chr01	irgsp1_rep	CDS	4730835	4730925	.	+	1	Parent=Os01t0188100-01
Chr01	irgsp1_rep	three_prime_UTR	4730926	4731142	.	+	.	Parent=Os01t0188100-01
Chr01	irgsp1_rep	mRNA	4734017	4737606	.	-	.	ID=Os01t0188200-01;Name=Os01t0188200-01;Locus_id=Os01g0188200;Note=Conserved hypothetical protein.;Transcript_evidence=AK106248 (DDBJ%2C Best hit);ORF_evidence=B9ETK1 (UniProt);NIAS_FLcDNA=002-100-D10;TENOR=Os01t0188200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	4737542	4737606	.	-	.	Parent=Os01t0188200-01
Chr01	irgsp1_rep	CDS	4737463	4737541	.	-	0	Parent=Os01t0188200-01
Chr01	irgsp1_rep	CDS	4736930	4737369	.	-	2	Parent=Os01t0188200-01
Chr01	irgsp1_rep	CDS	4736473	4736841	.	-	0	Parent=Os01t0188200-01
Chr01	irgsp1_rep	three_prime_UTR	4735038	4736472	.	-	.	Parent=Os01t0188200-01
Chr01	irgsp1_rep	three_prime_UTR	4734845	4734953	.	-	.	Parent=Os01t0188200-01
Chr01	irgsp1_rep	three_prime_UTR	4734017	4734767	.	-	.	Parent=Os01t0188200-01
Chr01	irgsp1_rep	mRNA	4739271	4744472	.	-	.	ID=Os01t0188400-01;Name=Os01t0188400-01;Locus_id=Os01g0188400;CGSNL Gene Symbol=NADP-ME1;CGSNL Gene Name=NADP-MALIC ENZYME 1;Oryzabase Gene Symbol Synonym(s)=NADP-ME%2C ME6%2C OschlME%2C XcrMal1;Oryzabase Gene Name Synonym(s)="NADP-dependent malic enzyme%2C chloroplastic"%2C chloroplastic NADP malic enzyme%2C plastidic NADP-ME;Note=NADP-dependent malic enzyme%2C chloroplast precursor (EC 1.1.1.40) (NADP-ME).;Transcript_evidence=AK072842 (DDBJ%2C Best hit),AK121770 (DDBJ%2C Best hit);ORF_evidence=A2WLJ5 (UniProt);GO=Biological Process: malate metabolic process (GO:0006108),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: malic enzyme activity (GO:0004470),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: malate dehydrogenase (oxaloacetate-decarboxylating) activity (GO:0016619),Molecular Function: metal ion binding (GO:0046872),Molecular Function: NAD binding (GO:0051287);InterPro=Malic oxidoreductase (IPR001891),Malic enzyme%2C N-terminal (IPR012301),Malic enzyme%2C NAD-binding (IPR012302),Malic enzyme%2C conserved site (IPR015884),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023143B07,J033092D06;Oryzabase=8734;TENOR=Os01t0188400-01
Chr01	irgsp1_rep	five_prime_UTR	4744382	4744472	.	-	.	Parent=Os01t0188400-01
Chr01	irgsp1_rep	CDS	4744328	4744381	.	-	0	Parent=Os01t0188400-01
Chr01	irgsp1_rep	CDS	4743968	4744209	.	-	0	Parent=Os01t0188400-01
Chr01	irgsp1_rep	CDS	4742792	4742912	.	-	1	Parent=Os01t0188400-01
Chr01	irgsp1_rep	CDS	4742634	4742708	.	-	0	Parent=Os01t0188400-01
Chr01	irgsp1_rep	CDS	4742350	4742501	.	-	0	Parent=Os01t0188400-01
Chr01	irgsp1_rep	CDS	4742148	4742253	.	-	1	Parent=Os01t0188400-01
Chr01	irgsp1_rep	CDS	4742012	4742077	.	-	0	Parent=Os01t0188400-01
Chr01	irgsp1_rep	CDS	4741812	4741907	.	-	0	Parent=Os01t0188400-01
Chr01	irgsp1_rep	CDS	4741650	4741721	.	-	0	Parent=Os01t0188400-01
Chr01	irgsp1_rep	CDS	4741458	4741541	.	-	0	Parent=Os01t0188400-01
Chr01	irgsp1_rep	CDS	4741232	4741330	.	-	0	Parent=Os01t0188400-01
Chr01	irgsp1_rep	CDS	4741084	4741131	.	-	0	Parent=Os01t0188400-01
Chr01	irgsp1_rep	CDS	4740934	4740987	.	-	0	Parent=Os01t0188400-01
Chr01	irgsp1_rep	CDS	4740742	4740840	.	-	0	Parent=Os01t0188400-01
Chr01	irgsp1_rep	CDS	4740529	4740618	.	-	0	Parent=Os01t0188400-01
Chr01	irgsp1_rep	CDS	4740360	4740437	.	-	0	Parent=Os01t0188400-01
Chr01	irgsp1_rep	CDS	4740103	4740177	.	-	0	Parent=Os01t0188400-01
Chr01	irgsp1_rep	CDS	4739921	4740011	.	-	0	Parent=Os01t0188400-01
Chr01	irgsp1_rep	CDS	4739700	4739828	.	-	2	Parent=Os01t0188400-01
Chr01	irgsp1_rep	CDS	4739519	4739607	.	-	2	Parent=Os01t0188400-01
Chr01	irgsp1_rep	three_prime_UTR	4739271	4739518	.	-	.	Parent=Os01t0188400-01
Chr01	irgsp1_rep	mRNA	4739276	4741848	.	-	.	ID=Os01t0188400-02;Name=Os01t0188400-02;Locus_id=Os01g0188400;CGSNL Gene Symbol=NADP-ME1;CGSNL Gene Name=NADP-MALIC ENZYME 1;Oryzabase Gene Symbol Synonym(s)=NADP-ME%2C ME6%2C OschlME%2C XcrMal1;Oryzabase Gene Name Synonym(s)="NADP-dependent malic enzyme%2C chloroplastic"%2C chloroplastic NADP malic enzyme%2C plastidic NADP-ME;Note=Similar to Malic enzyme.;Transcript_evidence=AK060358 (DDBJ%2C Best hit);ORF_evidence=A2WLJ5 (UniProt);GO=Biological Process: malate metabolic process (GO:0006108),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: malic enzyme activity (GO:0004470),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: malate dehydrogenase (oxaloacetate-decarboxylating) activity (GO:0016619),Molecular Function: metal ion binding (GO:0046872),Molecular Function: NAD binding (GO:0051287);InterPro=Malic oxidoreductase (IPR001891),Malic enzyme%2C N-terminal (IPR012301),Malic enzyme%2C NAD-binding (IPR012302),Malic enzyme%2C conserved site (IPR015884),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-008-H04;Oryzabase=8734;Expression=AK060358;TENOR=Os01t0188400-02;KEGG=Os01t0188400-02 (EC:1.1.1.40)
Chr01	irgsp1_rep	five_prime_UTR	4741848	4741848	.	-	.	Parent=Os01t0188400-02
Chr01	irgsp1_rep	CDS	4741812	4741847	.	-	0	Parent=Os01t0188400-02
Chr01	irgsp1_rep	CDS	4741650	4741721	.	-	0	Parent=Os01t0188400-02
Chr01	irgsp1_rep	CDS	4741458	4741541	.	-	0	Parent=Os01t0188400-02
Chr01	irgsp1_rep	CDS	4741232	4741330	.	-	0	Parent=Os01t0188400-02
Chr01	irgsp1_rep	CDS	4741084	4741131	.	-	0	Parent=Os01t0188400-02
Chr01	irgsp1_rep	CDS	4740934	4740987	.	-	0	Parent=Os01t0188400-02
Chr01	irgsp1_rep	CDS	4740742	4740840	.	-	0	Parent=Os01t0188400-02
Chr01	irgsp1_rep	CDS	4740529	4740618	.	-	0	Parent=Os01t0188400-02
Chr01	irgsp1_rep	CDS	4740360	4740437	.	-	0	Parent=Os01t0188400-02
Chr01	irgsp1_rep	CDS	4740103	4740177	.	-	0	Parent=Os01t0188400-02
Chr01	irgsp1_rep	CDS	4739921	4740011	.	-	0	Parent=Os01t0188400-02
Chr01	irgsp1_rep	CDS	4739700	4739828	.	-	2	Parent=Os01t0188400-02
Chr01	irgsp1_rep	CDS	4739519	4739607	.	-	2	Parent=Os01t0188400-02
Chr01	irgsp1_rep	three_prime_UTR	4739276	4739518	.	-	.	Parent=Os01t0188400-02
Chr01	irgsp1_rep	mRNA	4739768	4744023	.	+	.	ID=Os01t0188525-00;Name=Os01t0188525-00;Locus_id=Os01g0188525;Note=Hypothetical gene.;Transcript_evidence=BT068870 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0188525-00;KEGG=Os01t0188525-00
Chr01	irgsp1_rep	five_prime_UTR	4739768	4739830	.	+	.	Parent=Os01t0188525-00
Chr01	irgsp1_rep	five_prime_UTR	4739923	4740013	.	+	.	Parent=Os01t0188525-00
Chr01	irgsp1_rep	five_prime_UTR	4740100	4740176	.	+	.	Parent=Os01t0188525-00
Chr01	irgsp1_rep	five_prime_UTR	4740359	4740433	.	+	.	Parent=Os01t0188525-00
Chr01	irgsp1_rep	five_prime_UTR	4740516	4740633	.	+	.	Parent=Os01t0188525-00
Chr01	irgsp1_rep	five_prime_UTR	4740750	4740866	.	+	.	Parent=Os01t0188525-00
Chr01	irgsp1_rep	five_prime_UTR	4741052	4741123	.	+	.	Parent=Os01t0188525-00
Chr01	irgsp1_rep	five_prime_UTR	4741218	4741325	.	+	.	Parent=Os01t0188525-00
Chr01	irgsp1_rep	five_prime_UTR	4741446	4741560	.	+	.	Parent=Os01t0188525-00
Chr01	irgsp1_rep	five_prime_UTR	4741758	4741907	.	+	.	Parent=Os01t0188525-00
Chr01	irgsp1_rep	five_prime_UTR	4742012	4742076	.	+	.	Parent=Os01t0188525-00
Chr01	irgsp1_rep	five_prime_UTR	4742147	4742208	.	+	.	Parent=Os01t0188525-00
Chr01	irgsp1_rep	CDS	4742209	4742269	.	+	0	Parent=Os01t0188525-00
Chr01	irgsp1_rep	CDS	4742362	4742505	.	+	2	Parent=Os01t0188525-00
Chr01	irgsp1_rep	CDS	4742638	4742705	.	+	2	Parent=Os01t0188525-00
Chr01	irgsp1_rep	CDS	4742789	4742836	.	+	0	Parent=Os01t0188525-00
Chr01	irgsp1_rep	three_prime_UTR	4742837	4742905	.	+	.	Parent=Os01t0188525-00
Chr01	irgsp1_rep	three_prime_UTR	4743958	4744023	.	+	.	Parent=Os01t0188525-00
Chr01	irgsp1_rep	mRNA	4761327	4767478	.	-	.	ID=Os01t0188900-01;Name=Os01t0188900-01;Locus_id=Os01g0188900;Note=Similar to Ankyrin-like protein-like protein.;Transcript_evidence=AK066235 (DDBJ%2C Best hit);ORF_evidence=A2WL96 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J013058O21;Expression=AK066235;TENOR=Os01t0188900-01;KEGG=Os01t0188900-01 (EC:2.1.1.43)
Chr01	irgsp1_rep	five_prime_UTR	4767243	4767478	.	-	.	Parent=Os01t0188900-01
Chr01	irgsp1_rep	five_prime_UTR	4766381	4766576	.	-	.	Parent=Os01t0188900-01
Chr01	irgsp1_rep	CDS	4766218	4766380	.	-	0	Parent=Os01t0188900-01
Chr01	irgsp1_rep	CDS	4765984	4766115	.	-	2	Parent=Os01t0188900-01
Chr01	irgsp1_rep	CDS	4765510	4765653	.	-	2	Parent=Os01t0188900-01
Chr01	irgsp1_rep	CDS	4764504	4764508	.	-	2	Parent=Os01t0188900-01
Chr01	irgsp1_rep	three_prime_UTR	4764419	4764503	.	-	.	Parent=Os01t0188900-01
Chr01	irgsp1_rep	three_prime_UTR	4764169	4764297	.	-	.	Parent=Os01t0188900-01
Chr01	irgsp1_rep	three_prime_UTR	4763248	4763395	.	-	.	Parent=Os01t0188900-01
Chr01	irgsp1_rep	three_prime_UTR	4762311	4762412	.	-	.	Parent=Os01t0188900-01
Chr01	irgsp1_rep	three_prime_UTR	4762028	4762193	.	-	.	Parent=Os01t0188900-01
Chr01	irgsp1_rep	three_prime_UTR	4761327	4761643	.	-	.	Parent=Os01t0188900-01
Chr01	irgsp1_rep	mRNA	4768738	4782706	.	-	.	ID=Os01t0189100-01;Name=Os01t0189100-01;Locus_id=Os01g0189100;Note=Ankyrin domain containing protein.;Transcript_evidence=AK071981 (DDBJ%2C Best hit);ORF_evidence=B8ADP0 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Tetratricopeptide-like helical (IPR011990),Ubiquitin supergroup (IPR019955),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J013089O19;Expression=AK071981;TENOR=Os01t0189100-01;KEGG=Os01t0189100-01
Chr01	irgsp1_rep	five_prime_UTR	4782641	4782706	.	-	.	Parent=Os01t0189100-01
Chr01	irgsp1_rep	CDS	4782595	4782640	.	-	0	Parent=Os01t0189100-01
Chr01	irgsp1_rep	CDS	4782439	4782492	.	-	2	Parent=Os01t0189100-01
Chr01	irgsp1_rep	CDS	4775916	4776092	.	-	2	Parent=Os01t0189100-01
Chr01	irgsp1_rep	CDS	4775683	4775814	.	-	2	Parent=Os01t0189100-01
Chr01	irgsp1_rep	CDS	4774990	4775129	.	-	2	Parent=Os01t0189100-01
Chr01	irgsp1_rep	CDS	4773996	4774085	.	-	0	Parent=Os01t0189100-01
Chr01	irgsp1_rep	CDS	4773756	4773884	.	-	0	Parent=Os01t0189100-01
Chr01	irgsp1_rep	CDS	4773090	4773242	.	-	0	Parent=Os01t0189100-01
Chr01	irgsp1_rep	CDS	4772548	4772715	.	-	0	Parent=Os01t0189100-01
Chr01	irgsp1_rep	CDS	4772392	4772471	.	-	0	Parent=Os01t0189100-01
Chr01	irgsp1_rep	CDS	4771641	4771668	.	-	1	Parent=Os01t0189100-01
Chr01	irgsp1_rep	CDS	4771255	4771347	.	-	0	Parent=Os01t0189100-01
Chr01	irgsp1_rep	CDS	4770763	4771068	.	-	0	Parent=Os01t0189100-01
Chr01	irgsp1_rep	three_prime_UTR	4770106	4770762	.	-	.	Parent=Os01t0189100-01
Chr01	irgsp1_rep	three_prime_UTR	4769835	4769983	.	-	.	Parent=Os01t0189100-01
Chr01	irgsp1_rep	three_prime_UTR	4769480	4769745	.	-	.	Parent=Os01t0189100-01
Chr01	irgsp1_rep	three_prime_UTR	4768738	4769020	.	-	.	Parent=Os01t0189100-01
Chr01	irgsp1_rep	mRNA	4789656	4795346	.	+	.	ID=Os01t0189700-01;Name=Os01t0189700-01;Locus_id=Os01g0189700;Note=Similar to cDNA clone:001-031-C06%2C full insert sequence.;Transcript_evidence=AK100662 (DDBJ%2C Best hit);ORF_evidence=B7E3W8 (UniProt);NIAS_FLcDNA=J023111N08;TENOR=Os01t0189700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	4789656	4789786	.	+	.	Parent=Os01t0189700-01
Chr01	irgsp1_rep	five_prime_UTR	4789906	4790010	.	+	.	Parent=Os01t0189700-01
Chr01	irgsp1_rep	five_prime_UTR	4790830	4790982	.	+	.	Parent=Os01t0189700-01
Chr01	irgsp1_rep	five_prime_UTR	4791060	4792234	.	+	.	Parent=Os01t0189700-01
Chr01	irgsp1_rep	five_prime_UTR	4792329	4792459	.	+	.	Parent=Os01t0189700-01
Chr01	irgsp1_rep	five_prime_UTR	4792981	4793002	.	+	.	Parent=Os01t0189700-01
Chr01	irgsp1_rep	CDS	4793003	4793134	.	+	0	Parent=Os01t0189700-01
Chr01	irgsp1_rep	CDS	4794156	4794254	.	+	0	Parent=Os01t0189700-01
Chr01	irgsp1_rep	CDS	4794550	4794648	.	+	0	Parent=Os01t0189700-01
Chr01	irgsp1_rep	three_prime_UTR	4794649	4794686	.	+	.	Parent=Os01t0189700-01
Chr01	irgsp1_rep	three_prime_UTR	4794763	4795346	.	+	.	Parent=Os01t0189700-01
Chr01	irgsp1_rep	mRNA	4789690	4794935	.	+	.	ID=Os01t0189700-02;Name=Os01t0189700-02;Locus_id=Os01g0189700;Note=Ankyrin repeat domain containing protein.;Transcript_evidence=AK071329 (DDBJ%2C Best hit);ORF_evidence=B8ADP1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J023089D09;TENOR=Os01t0189700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	4789690	4789786	.	+	.	Parent=Os01t0189700-02
Chr01	irgsp1_rep	five_prime_UTR	4789906	4790982	.	+	.	Parent=Os01t0189700-02
Chr01	irgsp1_rep	five_prime_UTR	4791060	4792324	.	+	.	Parent=Os01t0189700-02
Chr01	irgsp1_rep	CDS	4792325	4792459	.	+	0	Parent=Os01t0189700-02
Chr01	irgsp1_rep	CDS	4792981	4793091	.	+	0	Parent=Os01t0189700-02
Chr01	irgsp1_rep	three_prime_UTR	4793092	4793134	.	+	.	Parent=Os01t0189700-02
Chr01	irgsp1_rep	three_prime_UTR	4794550	4794686	.	+	.	Parent=Os01t0189700-02
Chr01	irgsp1_rep	three_prime_UTR	4794763	4794935	.	+	.	Parent=Os01t0189700-02
Chr01	irgsp1_rep	mRNA	4789719	4791359	.	+	.	ID=Os01t0189700-03;Name=Os01t0189700-03;Locus_id=Os01g0189700;Note=Ankyrin repeat-containing domain domain containing protein.;Transcript_evidence=AK119982 (DDBJ%2C Best hit);ORF_evidence=A2WL96 (UniProt);InterPro=Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=002-184-F08;TENOR=Os01t0189700-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	4789719	4789786	.	+	.	Parent=Os01t0189700-03
Chr01	irgsp1_rep	five_prime_UTR	4789906	4790009	.	+	.	Parent=Os01t0189700-03
Chr01	irgsp1_rep	five_prime_UTR	4790833	4790982	.	+	.	Parent=Os01t0189700-03
Chr01	irgsp1_rep	five_prime_UTR	4791060	4791088	.	+	.	Parent=Os01t0189700-03
Chr01	irgsp1_rep	CDS	4791089	4791340	.	+	0	Parent=Os01t0189700-03
Chr01	irgsp1_rep	three_prime_UTR	4791341	4791359	.	+	.	Parent=Os01t0189700-03
Chr01	irgsp1_rep	mRNA	4791837	4794940	.	+	.	ID=Os01t0189700-04;Name=Os01t0189700-04;Locus_id=Os01g0189700;Note=Hypothetical protein.;Transcript_evidence=AK059650 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-031-C06;TENOR=Os01t0189700-04;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	4791837	4792459	.	+	.	Parent=Os01t0189700-04
Chr01	irgsp1_rep	five_prime_UTR	4792981	4793002	.	+	.	Parent=Os01t0189700-04
Chr01	irgsp1_rep	CDS	4793003	4793134	.	+	0	Parent=Os01t0189700-04
Chr01	irgsp1_rep	CDS	4794156	4794254	.	+	0	Parent=Os01t0189700-04
Chr01	irgsp1_rep	CDS	4794569	4794658	.	+	0	Parent=Os01t0189700-04
Chr01	irgsp1_rep	three_prime_UTR	4794659	4794686	.	+	.	Parent=Os01t0189700-04
Chr01	irgsp1_rep	three_prime_UTR	4794763	4794940	.	+	.	Parent=Os01t0189700-04
Chr01	irgsp1_rep	mRNA	4796155	4798454	.	-	.	ID=Os01t0189800-01;Name=Os01t0189800-01;Locus_id=Os01g0189800;Note=Protein of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK101747 (DDBJ%2C Best hit);ORF_evidence=A2WLK2 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=J033061P16;Expression=AK101747;TENOR=Os01t0189800-01;KEGG=Os01t0189800-01
Chr01	irgsp1_rep	five_prime_UTR	4798366	4798454	.	-	.	Parent=Os01t0189800-01
Chr01	irgsp1_rep	CDS	4796897	4798365	.	-	0	Parent=Os01t0189800-01
Chr01	irgsp1_rep	CDS	4796434	4796461	.	-	1	Parent=Os01t0189800-01
Chr01	irgsp1_rep	three_prime_UTR	4796155	4796433	.	-	.	Parent=Os01t0189800-01
Chr01	irgsp1_rep	mRNA	4800233	4802174	.	+	.	ID=Os01t0190000-01;Name=Os01t0190000-01;Locus_id=Os01g0190000;Note=Similar to oxidoreductase.;Transcript_evidence=AK288019 (DDBJ%2C Best hit);ORF_evidence=NP_188773.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Taurine catabolism dioxygenase TauD/TfdA (IPR003819);NIAS_FLcDNA=J075123K09;TENOR=Os01t0190000-01;KEGG=Os01t0190000-01
Chr01	irgsp1_rep	five_prime_UTR	4800233	4800256	.	+	.	Parent=Os01t0190000-01
Chr01	irgsp1_rep	CDS	4800257	4800640	.	+	0	Parent=Os01t0190000-01
Chr01	irgsp1_rep	CDS	4800758	4801011	.	+	0	Parent=Os01t0190000-01
Chr01	irgsp1_rep	CDS	4801646	4801729	.	+	1	Parent=Os01t0190000-01
Chr01	irgsp1_rep	CDS	4801871	4802006	.	+	1	Parent=Os01t0190000-01
Chr01	irgsp1_rep	three_prime_UTR	4802007	4802174	.	+	.	Parent=Os01t0190000-01
Chr01	irgsp1_rep	mRNA	4816831	4818958	.	+	.	ID=Os01t0190300-01;Name=Os01t0190300-01;Locus_id=Os01g0190300;CGSNL Gene Symbol=IAA2;Oryzabase Gene Symbol Synonym(s)=OsIAA2;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 2%2C Indoleacetic Acid-Induced 2;Note=Similar to Auxin-responsive protein IAA26 (Indoleacetic acid-induced protein 26) (PhytoChrome-associated protein 1).;Transcript_evidence=AK100314 (DDBJ%2C Best hit);ORF_evidence=Q9LG86 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Aux/IAA-ARF-dimerisation (IPR011525);NIAS_FLcDNA=J023078N13;Oryzabase=10894;Expression=AK100314;TENOR=Os01t0190300-01;KEGG=Os01t0190300-01
Chr01	irgsp1_rep	five_prime_UTR	4816831	4817459	.	+	.	Parent=Os01t0190300-01
Chr01	irgsp1_rep	CDS	4817460	4817647	.	+	0	Parent=Os01t0190300-01
Chr01	irgsp1_rep	CDS	4817737	4818023	.	+	1	Parent=Os01t0190300-01
Chr01	irgsp1_rep	CDS	4818121	4818250	.	+	2	Parent=Os01t0190300-01
Chr01	irgsp1_rep	CDS	4818331	4818394	.	+	1	Parent=Os01t0190300-01
Chr01	irgsp1_rep	CDS	4818467	4818514	.	+	0	Parent=Os01t0190300-01
Chr01	irgsp1_rep	three_prime_UTR	4818515	4818958	.	+	.	Parent=Os01t0190300-01
Chr01	irgsp1_rep	mRNA	4820155	4823129	.	-	.	ID=Os01t0190400-01;Name=Os01t0190400-01;Locus_id=Os01g0190400;CGSNL Gene Symbol=HXK8;CGSNL Gene Name=HEXOKINASE-8;Oryzabase Gene Symbol Synonym(s)=OsHXK8;Oryzabase Gene Name Synonym(s)=Hexokinase 8;Note=Similar to Hexokinase.;Transcript_evidence=AK064011 (DDBJ%2C Best hit);ORF_evidence=Q1WM15 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Hexokinase (IPR001312),Hexokinase%2C N-terminal (IPR022672),Hexokinase%2C C-terminal (IPR022673);NIAS_FLcDNA=001-124-G12;Oryzabase=9009;Expression=AK064011;TENOR=Os01t0190400-01;KEGG=Os01t0190400-01 (EC:2.7.1.1)
Chr01	irgsp1_rep	five_prime_UTR	4822849	4823129	.	-	.	Parent=Os01t0190400-01
Chr01	irgsp1_rep	CDS	4822670	4822848	.	-	0	Parent=Os01t0190400-01
Chr01	irgsp1_rep	CDS	4822374	4822524	.	-	1	Parent=Os01t0190400-01
Chr01	irgsp1_rep	CDS	4822072	4822254	.	-	0	Parent=Os01t0190400-01
Chr01	irgsp1_rep	CDS	4821735	4821809	.	-	0	Parent=Os01t0190400-01
Chr01	irgsp1_rep	CDS	4821484	4821639	.	-	0	Parent=Os01t0190400-01
Chr01	irgsp1_rep	CDS	4821244	4821342	.	-	0	Parent=Os01t0190400-01
Chr01	irgsp1_rep	CDS	4821018	4821148	.	-	0	Parent=Os01t0190400-01
Chr01	irgsp1_rep	CDS	4820759	4820840	.	-	1	Parent=Os01t0190400-01
Chr01	irgsp1_rep	CDS	4820365	4820685	.	-	0	Parent=Os01t0190400-01
Chr01	irgsp1_rep	three_prime_UTR	4820155	4820364	.	-	.	Parent=Os01t0190400-01
Chr01	irgsp1_rep	mRNA	4820178	4822917	.	-	.	ID=Os01t0190400-02;Name=Os01t0190400-02;Locus_id=Os01g0190400;CGSNL Gene Symbol=HXK8;CGSNL Gene Name=HEXOKINASE-8;Oryzabase Gene Symbol Synonym(s)=OsHXK8;Oryzabase Gene Name Synonym(s)=Hexokinase 8;Note=Similar to Hexokinase.;Transcript_evidence=AK099119 (DDBJ%2C Best hit);ORF_evidence=Q1WM15 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Hexokinase (IPR001312),Hexokinase%2C N-terminal (IPR022672),Hexokinase%2C C-terminal (IPR022673);NIAS_FLcDNA=J023038N14;Oryzabase=9009;Expression=AK099119;TENOR=Os01t0190400-02;KEGG=Os01t0190400-02 (EC:2.7.1.1)
Chr01	irgsp1_rep	five_prime_UTR	4822849	4822917	.	-	.	Parent=Os01t0190400-02
Chr01	irgsp1_rep	CDS	4822670	4822848	.	-	0	Parent=Os01t0190400-02
Chr01	irgsp1_rep	CDS	4822374	4822524	.	-	1	Parent=Os01t0190400-02
Chr01	irgsp1_rep	CDS	4822072	4822254	.	-	0	Parent=Os01t0190400-02
Chr01	irgsp1_rep	CDS	4821735	4821809	.	-	0	Parent=Os01t0190400-02
Chr01	irgsp1_rep	CDS	4821484	4821639	.	-	0	Parent=Os01t0190400-02
Chr01	irgsp1_rep	CDS	4821244	4821342	.	-	0	Parent=Os01t0190400-02
Chr01	irgsp1_rep	CDS	4821018	4821148	.	-	0	Parent=Os01t0190400-02
Chr01	irgsp1_rep	CDS	4820759	4820840	.	-	1	Parent=Os01t0190400-02
Chr01	irgsp1_rep	CDS	4820365	4820685	.	-	0	Parent=Os01t0190400-02
Chr01	irgsp1_rep	three_prime_UTR	4820178	4820364	.	-	.	Parent=Os01t0190400-02
Chr01	irgsp1_rep	mRNA	4826590	4828733	.	+	.	ID=Os01t0190500-01;Name=Os01t0190500-01;Locus_id=Os01g0190500;Note=IQ calmodulin-binding region domain containing protein.;Transcript_evidence=AK119868 (DDBJ%2C Best hit);ORF_evidence=B8ADP5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);NIAS_FLcDNA=002-179-B12;Expression=AK119868;TENOR=Os01t0190500-01;KEGG=Os01t0190500-01
Chr01	irgsp1_rep	five_prime_UTR	4826590	4826702	.	+	.	Parent=Os01t0190500-01
Chr01	irgsp1_rep	CDS	4826703	4827155	.	+	0	Parent=Os01t0190500-01
Chr01	irgsp1_rep	CDS	4827344	4827559	.	+	0	Parent=Os01t0190500-01
Chr01	irgsp1_rep	CDS	4827683	4828411	.	+	0	Parent=Os01t0190500-01
Chr01	irgsp1_rep	three_prime_UTR	4828412	4828733	.	+	.	Parent=Os01t0190500-01
Chr01	irgsp1_rep	mRNA	4848843	4850992	.	-	.	ID=Os01t0191000-00;Name=Os01t0191000-00;Locus_id=Os01g0191000;Note=Similar to H0717B12.1 protein.;Transcript_evidence=EU963117 (DDBJ);ORF_evidence=Q01JC1 (UniProt);TENOR=Os01t0191000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	4850812	4850992	.	-	0	Parent=Os01t0191000-00
Chr01	irgsp1_rep	CDS	4850650	4850723	.	-	2	Parent=Os01t0191000-00
Chr01	irgsp1_rep	CDS	4850447	4850565	.	-	0	Parent=Os01t0191000-00
Chr01	irgsp1_rep	CDS	4849675	4849758	.	-	1	Parent=Os01t0191000-00
Chr01	irgsp1_rep	CDS	4849017	4849089	.	-	1	Parent=Os01t0191000-00
Chr01	irgsp1_rep	three_prime_UTR	4848843	4849016	.	-	.	Parent=Os01t0191000-00
Chr01	irgsp1_rep	mRNA	4852435	4854387	.	+	.	ID=Os01t0191100-01;Name=Os01t0191100-01;Locus_id=Os01g0191100;Oryzabase Gene Name Synonym(s)=Ribosomal protein L12eI;Note=Similar to Acidic ribosomal protein P2a-4 (Fragment).;Transcript_evidence=AK058815 (DDBJ%2C Best hit);ORF_evidence=B6U978 (UniProt);GO=Biological Process: translational elongation (GO:0006414),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein 60S (IPR001813);NIAS_FLcDNA=001-003-F04;Oryzabase=17658;Expression=AK058815;TENOR=Os01t0191100-01;KEGG=Os01t0191100-01
Chr01	irgsp1_rep	five_prime_UTR	4852435	4852523	.	+	.	Parent=Os01t0191100-01
Chr01	irgsp1_rep	five_prime_UTR	4853217	4853217	.	+	.	Parent=Os01t0191100-01
Chr01	irgsp1_rep	CDS	4853218	4853305	.	+	0	Parent=Os01t0191100-01
Chr01	irgsp1_rep	CDS	4853655	4853884	.	+	2	Parent=Os01t0191100-01
Chr01	irgsp1_rep	CDS	4854103	4854129	.	+	0	Parent=Os01t0191100-01
Chr01	irgsp1_rep	three_prime_UTR	4854130	4854387	.	+	.	Parent=Os01t0191100-01
Chr01	irgsp1_rep	mRNA	4869090	4869415	.	-	.	ID=Os01t0191150-00;Name=Os01t0191150-00;Locus_id=Os01g0191150;Note=Similar to profilin-5.;Transcript_evidence=AK375203 (DDBJ);ORF_evidence=NP_001105622.1 (RefSeq);GO=Biological Process: cytoskeleton organization (GO:0007010),Biological Process: actin cytoskeleton organization (GO:0030036),Cellular Component: actin cytoskeleton (GO:0015629),Molecular Function: actin binding (GO:0003779);InterPro=Profilin/allergen (IPR002097),Profilin%2C plant (IPR005455);TENOR=Os01t0191150-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	4869239	4869415	.	-	0	Parent=Os01t0191150-00
Chr01	irgsp1_rep	three_prime_UTR	4869090	4869238	.	-	.	Parent=Os01t0191150-00
Chr01	irgsp1_rep	mRNA	4872180	4873806	.	-	.	ID=Os01t0191200-01;Name=Os01t0191200-01;Locus_id=Os01g0191200;Note=Similar to Acid phosphatase.;Transcript_evidence=AK100363 (DDBJ%2C Best hit);ORF_evidence=A6N0F9 (UniProt);GO=Molecular Function: acid phosphatase activity (GO:0003993);InterPro=Acid phosphatase (Class B) (IPR005519),Acid phosphatase%2C plant (IPR010028),Vegetative storage protein/acid phosphatase (IPR014403),HAD-like domain (IPR023214);NIAS_FLcDNA=J023083N07;TENOR=Os01t0191200-01
Chr01	irgsp1_rep	five_prime_UTR	4873572	4873806	.	-	.	Parent=Os01t0191200-01
Chr01	irgsp1_rep	CDS	4872916	4873571	.	-	0	Parent=Os01t0191200-01
Chr01	irgsp1_rep	CDS	4872340	4872595	.	-	1	Parent=Os01t0191200-01
Chr01	irgsp1_rep	three_prime_UTR	4872180	4872339	.	-	.	Parent=Os01t0191200-01
Chr01	irgsp1_rep	mRNA	4872158	4873594	.	-	.	ID=Os01t0191200-02;Name=Os01t0191200-02;Locus_id=Os01g0191200;Note=Similar to Acid phosphatase.;Transcript_evidence=AK060964 (DDBJ%2C Best hit),AK061466 (DDBJ%2C Best hit),AK104183 (DDBJ%2C Best hit),AK104471 (DDBJ%2C Best hit),AK109404 (DDBJ%2C Best hit);ORF_evidence=A6N0F9 (UniProt);NIAS_FLcDNA=006-202-B05,006-308-C05,006-302-C11,006-301-D10,006-302-E06;Expression=AK060964;TENOR=Os01t0191200-02;KEGG=Os01t0191200-02
Chr01	irgsp1_rep	five_prime_UTR	4873572	4873594	.	-	.	Parent=Os01t0191200-02
Chr01	irgsp1_rep	CDS	4872916	4873571	.	-	0	Parent=Os01t0191200-02
Chr01	irgsp1_rep	CDS	4872340	4872595	.	-	1	Parent=Os01t0191200-02
Chr01	irgsp1_rep	three_prime_UTR	4872158	4872339	.	-	.	Parent=Os01t0191200-02
Chr01	irgsp1_rep	mRNA	4879909	4885840	.	-	.	ID=Os01t0191300-01;Name=Os01t0191300-01;Locus_id=Os01g0191300;Oryzabase Gene Symbol Synonym(s)=ONAC003%2C ONAC3%2C ONAC016%2C ONAC16%2C SNAC3%2C OsSND3%2C SND3%2C OsNAC006%2C NAC006;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 003%2C NAC domain-containing protein 3%2C NAC domain-containing protein 16%2C stress-responsive NAC transcription factor 3%2C SECONDARY WALL-ASSOCIATED NAC PROTEIN3;Note=Similar to NAC-type transcription factor.;Transcript_evidence=AK106152 (DDBJ%2C Best hit),AK061716 (DDBJ%2C Best hit);ORF_evidence=B2CPX4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=001-207-H11,001-037-H07;Manual Curation=June 6%2C 2016;Oryzabase=11455;TENOR=Os01t0191300-01
Chr01	irgsp1_rep	five_prime_UTR	4885792	4885840	.	-	.	Parent=Os01t0191300-01
Chr01	irgsp1_rep	five_prime_UTR	4885598	4885675	.	-	.	Parent=Os01t0191300-01
Chr01	irgsp1_rep	CDS	4885484	4885597	.	-	0	Parent=Os01t0191300-01
Chr01	irgsp1_rep	CDS	4885154	4885331	.	-	0	Parent=Os01t0191300-01
Chr01	irgsp1_rep	CDS	4884026	4884615	.	-	2	Parent=Os01t0191300-01
Chr01	irgsp1_rep	CDS	4883011	4883265	.	-	0	Parent=Os01t0191300-01
Chr01	irgsp1_rep	CDS	4881888	4881968	.	-	0	Parent=Os01t0191300-01
Chr01	irgsp1_rep	CDS	4880148	4880231	.	-	0	Parent=Os01t0191300-01
Chr01	irgsp1_rep	three_prime_UTR	4879909	4880147	.	-	.	Parent=Os01t0191300-01
Chr01	irgsp1_rep	mRNA	4879873	4885840	.	-	.	ID=Os01t0191300-02;Name=Os01t0191300-02;Locus_id=Os01g0191300;Oryzabase Gene Symbol Synonym(s)=ONAC003%2C ONAC3%2C ONAC016%2C ONAC16%2C SNAC3%2C OsSND3%2C SND3%2C OsNAC006%2C NAC006;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 003%2C NAC domain-containing protein 3%2C NAC domain-containing protein 16%2C stress-responsive NAC transcription factor 3%2C SECONDARY WALL-ASSOCIATED NAC PROTEIN3;Note=Similar to NAC-type transcription factor.;Transcript_evidence=AK066231 (DDBJ%2C Best hit);ORF_evidence=B2CPX4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=J013059M09;Manual Curation=June 6%2C 2016;Oryzabase=11455;TENOR=Os01t0191300-02;KEGG=Os01t0191300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	4885792	4885840	.	-	.	Parent=Os01t0191300-02
Chr01	irgsp1_rep	five_prime_UTR	4885484	4885675	.	-	.	Parent=Os01t0191300-02
Chr01	irgsp1_rep	five_prime_UTR	4884464	4885331	.	-	.	Parent=Os01t0191300-02
Chr01	irgsp1_rep	CDS	4884026	4884463	.	-	0	Parent=Os01t0191300-02
Chr01	irgsp1_rep	CDS	4883011	4883265	.	-	0	Parent=Os01t0191300-02
Chr01	irgsp1_rep	CDS	4881888	4881968	.	-	0	Parent=Os01t0191300-02
Chr01	irgsp1_rep	CDS	4880148	4880231	.	-	0	Parent=Os01t0191300-02
Chr01	irgsp1_rep	three_prime_UTR	4879873	4880147	.	-	.	Parent=Os01t0191300-02
Chr01	irgsp1_rep	mRNA	4879215	4885839	.	-	.	ID=Os01t0191300-03;Name=Os01t0191300-03;Locus_id=Os01g0191300;RAP-DB Gene Symbol Synonym(s)=OsNAC006;Oryzabase Gene Symbol Synonym(s)=ONAC003%2C ONAC3%2C ONAC016%2C ONAC16%2C SNAC3%2C OsSND3%2C SND3;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 003%2C NAC domain-containing protein 3%2C NAC domain-containing protein 16%2C stress-responsive NAC transcription factor 3%2C SECONDARY WALL-ASSOCIATED NAC PROTEIN3;Note=NAC transcription factor%2C Drought resistance;Transcript_evidence=AK121339;ORF_evidence=B7F736;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=NAC domain superfamily (IPR036093),NAC domain (IPR003441);NIAS_FLcDNA=J023120G13;Manual Curation=April 3%2C 2020;Literature_PMID=32225072;Oryzabase=11455;TENOR=Os01t0191300-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	4885792	4885839	.	-	.	Parent=Os01t0191300-03
Chr01	irgsp1_rep	five_prime_UTR	4885484	4885675	.	-	.	Parent=Os01t0191300-03
Chr01	irgsp1_rep	five_prime_UTR	4884464	4885331	.	-	.	Parent=Os01t0191300-03
Chr01	irgsp1_rep	CDS	4884026	4884463	.	-	0	Parent=Os01t0191300-03
Chr01	irgsp1_rep	CDS	4883005	4883265	.	-	0	Parent=Os01t0191300-03
Chr01	irgsp1_rep	three_prime_UTR	4879215	4883004	.	-	.	Parent=Os01t0191300-03
Chr01	irgsp1_rep	mRNA	4887954	4891334	.	-	.	ID=Os01t0191400-01;Name=Os01t0191400-01;Locus_id=Os01g0191400;Note=Hypothetical protein.;Transcript_evidence=AK101179 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033029D23;Expression=AK101179;TENOR=Os01t0191400-01;KEGG=Os01t0191400-01
Chr01	irgsp1_rep	five_prime_UTR	4890237	4891334	.	-	.	Parent=Os01t0191400-01
Chr01	irgsp1_rep	CDS	4889997	4890236	.	-	0	Parent=Os01t0191400-01
Chr01	irgsp1_rep	three_prime_UTR	4889538	4889996	.	-	.	Parent=Os01t0191400-01
Chr01	irgsp1_rep	three_prime_UTR	4889039	4889158	.	-	.	Parent=Os01t0191400-01
Chr01	irgsp1_rep	three_prime_UTR	4887954	4888874	.	-	.	Parent=Os01t0191400-01
Chr01	irgsp1_rep	mRNA	4891518	4896876	.	+	.	ID=Os01t0191500-01;Name=Os01t0191500-01;Locus_id=Os01g0191500;Oryzabase Gene Name Synonym(s)=mitochondrial-processing peptidase subunit alpha;Note=Similar to Mitochondrial processing peptidase.;Transcript_evidence=AK101856 (DDBJ%2C Best hit),AK071930 (DDBJ%2C Best hit);ORF_evidence=NP_001150614.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: catalytic activity (GO:0003824),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: metal ion binding (GO:0046872);InterPro=Peptidase M16%2C C-terminal (IPR007863),Peptidase M16%2C core (IPR011237),Metalloenzyme%2C LuxS/M16 peptidase-like%2C metal-binding (IPR011249),Peptidase M16%2C N-terminal (IPR011765);NIAS_FLcDNA=J033069O10,J013073N24;Oryzabase=12526;TENOR=Os01t0191500-01
Chr01	irgsp1_rep	five_prime_UTR	4891518	4891646	.	+	.	Parent=Os01t0191500-01
Chr01	irgsp1_rep	CDS	4891647	4891682	.	+	0	Parent=Os01t0191500-01
Chr01	irgsp1_rep	CDS	4892684	4892929	.	+	0	Parent=Os01t0191500-01
Chr01	irgsp1_rep	CDS	4893021	4893317	.	+	0	Parent=Os01t0191500-01
Chr01	irgsp1_rep	CDS	4893407	4893574	.	+	0	Parent=Os01t0191500-01
Chr01	irgsp1_rep	CDS	4893674	4893841	.	+	0	Parent=Os01t0191500-01
Chr01	irgsp1_rep	CDS	4893924	4894004	.	+	0	Parent=Os01t0191500-01
Chr01	irgsp1_rep	CDS	4894105	4894171	.	+	0	Parent=Os01t0191500-01
Chr01	irgsp1_rep	CDS	4894657	4894751	.	+	2	Parent=Os01t0191500-01
Chr01	irgsp1_rep	CDS	4895027	4895099	.	+	0	Parent=Os01t0191500-01
Chr01	irgsp1_rep	CDS	4895177	4895247	.	+	2	Parent=Os01t0191500-01
Chr01	irgsp1_rep	CDS	4895325	4895374	.	+	0	Parent=Os01t0191500-01
Chr01	irgsp1_rep	CDS	4896263	4896375	.	+	1	Parent=Os01t0191500-01
Chr01	irgsp1_rep	CDS	4896461	4896513	.	+	2	Parent=Os01t0191500-01
Chr01	irgsp1_rep	three_prime_UTR	4896514	4896876	.	+	.	Parent=Os01t0191500-01
Chr01	irgsp1_rep	mRNA	4905609	4909339	.	+	.	ID=Os01t0191700-01;Name=Os01t0191700-01;Locus_id=Os01g0191700;Oryzabase Gene Symbol Synonym(s)=OsPFK01%2C PFK01%2C PFK1%2C OsPFK1;Oryzabase Gene Name Synonym(s)=phosphofructokinase 1;Note=Similar to Pyrophosphate-fructose-6-phosphate 1-phosphotransferase-like protein (Pyrophosphate-dependent phosphofructo-1-kinase-like protein).;Transcript_evidence=AK121093 (DDBJ%2C Best hit);ORF_evidence=B6TE72 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Cellular Component: 6-phosphofructokinase complex (GO:0005945),Molecular Function: 6-phosphofructokinase activity (GO:0003872),Molecular Function: ATP binding (GO:0005524);InterPro=Phosphofructokinase domain (IPR000023),Pyrophosphate-dependent phosphofructokinase TP0108 (IPR012004),Phosphofructokinase (IPR022953);NIAS_FLcDNA=J023067A15;Oryzabase=19611;Expression=AK121093;TENOR=Os01t0191700-01;KEGG=Os01t0191700-01 (EC:2.7.1.11)
Chr01	irgsp1_rep	five_prime_UTR	4905609	4905789	.	+	.	Parent=Os01t0191700-01
Chr01	irgsp1_rep	CDS	4905790	4905996	.	+	0	Parent=Os01t0191700-01
Chr01	irgsp1_rep	CDS	4906437	4906483	.	+	0	Parent=Os01t0191700-01
Chr01	irgsp1_rep	CDS	4906623	4906662	.	+	1	Parent=Os01t0191700-01
Chr01	irgsp1_rep	CDS	4906770	4906970	.	+	0	Parent=Os01t0191700-01
Chr01	irgsp1_rep	CDS	4907260	4907472	.	+	0	Parent=Os01t0191700-01
Chr01	irgsp1_rep	CDS	4907561	4907629	.	+	0	Parent=Os01t0191700-01
Chr01	irgsp1_rep	CDS	4907711	4907840	.	+	0	Parent=Os01t0191700-01
Chr01	irgsp1_rep	CDS	4907934	4907974	.	+	2	Parent=Os01t0191700-01
Chr01	irgsp1_rep	CDS	4908063	4908287	.	+	0	Parent=Os01t0191700-01
Chr01	irgsp1_rep	CDS	4908575	4908778	.	+	0	Parent=Os01t0191700-01
Chr01	irgsp1_rep	CDS	4908901	4909119	.	+	0	Parent=Os01t0191700-01
Chr01	irgsp1_rep	three_prime_UTR	4909120	4909339	.	+	.	Parent=Os01t0191700-01
Chr01	irgsp1_rep	mRNA	4909990	4913696	.	-	.	ID=Os01t0191800-01;Name=Os01t0191800-01;Locus_id=Os01g0191800;Oryzabase Gene Name Synonym(s)=Aurora-B;Note=Similar to Aurora kinase.;Transcript_evidence=AK102360 (DDBJ%2C Best hit);ORF_evidence=Q4R1K7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033091I08;Oryzabase=12396;TENOR=Os01t0191800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	4913621	4913696	.	-	.	Parent=Os01t0191800-01
Chr01	irgsp1_rep	CDS	4913582	4913620	.	-	0	Parent=Os01t0191800-01
Chr01	irgsp1_rep	CDS	4912877	4912987	.	-	0	Parent=Os01t0191800-01
Chr01	irgsp1_rep	CDS	4911725	4911871	.	-	0	Parent=Os01t0191800-01
Chr01	irgsp1_rep	CDS	4911536	4911631	.	-	0	Parent=Os01t0191800-01
Chr01	irgsp1_rep	CDS	4911350	4911445	.	-	0	Parent=Os01t0191800-01
Chr01	irgsp1_rep	CDS	4911133	4911229	.	-	0	Parent=Os01t0191800-01
Chr01	irgsp1_rep	CDS	4910930	4911047	.	-	2	Parent=Os01t0191800-01
Chr01	irgsp1_rep	CDS	4910538	4910610	.	-	1	Parent=Os01t0191800-01
Chr01	irgsp1_rep	CDS	4910311	4910412	.	-	0	Parent=Os01t0191800-01
Chr01	irgsp1_rep	three_prime_UTR	4909990	4910310	.	-	.	Parent=Os01t0191800-01
Chr01	irgsp1_rep	mRNA	4909990	4913659	.	-	.	ID=Os01t0191800-02;Name=Os01t0191800-02;Locus_id=Os01g0191800;Oryzabase Gene Name Synonym(s)=Aurora-B;Note=Similar to Aurora kinase.;Transcript_evidence=AK061360 (DDBJ%2C Best hit);ORF_evidence=Q4R1K7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=006-304-B11;Oryzabase=12396;TENOR=Os01t0191800-02
Chr01	irgsp1_rep	five_prime_UTR	4913621	4913659	.	-	.	Parent=Os01t0191800-02
Chr01	irgsp1_rep	CDS	4913582	4913620	.	-	0	Parent=Os01t0191800-02
Chr01	irgsp1_rep	CDS	4912877	4912987	.	-	0	Parent=Os01t0191800-02
Chr01	irgsp1_rep	CDS	4911725	4911871	.	-	0	Parent=Os01t0191800-02
Chr01	irgsp1_rep	CDS	4911536	4911631	.	-	0	Parent=Os01t0191800-02
Chr01	irgsp1_rep	CDS	4911350	4911445	.	-	0	Parent=Os01t0191800-02
Chr01	irgsp1_rep	CDS	4911133	4911229	.	-	0	Parent=Os01t0191800-02
Chr01	irgsp1_rep	CDS	4910930	4911047	.	-	2	Parent=Os01t0191800-02
Chr01	irgsp1_rep	CDS	4910538	4910610	.	-	1	Parent=Os01t0191800-02
Chr01	irgsp1_rep	CDS	4910311	4910412	.	-	0	Parent=Os01t0191800-02
Chr01	irgsp1_rep	three_prime_UTR	4909990	4910310	.	-	.	Parent=Os01t0191800-02
Chr01	irgsp1_rep	mRNA	4917960	4919224	.	-	.	ID=Os01t0191900-01;Name=Os01t0191900-01;Locus_id=Os01g0191900;Oryzabase Gene Symbol Synonym(s)=R2R3-MYB;Note=Similar to Blind.;Transcript_evidence=AK109125 (DDBJ%2C Best hit);ORF_evidence=Q8S3Y3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=002-155-D04;Oryzabase=16293;Expression=AK109125;TENOR=Os01t0191900-01;KEGG=Os01t0191900-01
Chr01	irgsp1_rep	five_prime_UTR	4919094	4919224	.	-	.	Parent=Os01t0191900-01
Chr01	irgsp1_rep	CDS	4918958	4919093	.	-	0	Parent=Os01t0191900-01
Chr01	irgsp1_rep	CDS	4918728	4918857	.	-	2	Parent=Os01t0191900-01
Chr01	irgsp1_rep	CDS	4918123	4918651	.	-	1	Parent=Os01t0191900-01
Chr01	irgsp1_rep	three_prime_UTR	4917960	4918122	.	-	.	Parent=Os01t0191900-01
Chr01	irgsp1_rep	mRNA	4949133	4951123	.	-	.	ID=Os01t0192000-01;Name=Os01t0192000-01;Locus_id=Os01g0192000;RAP-DB Gene Symbol Synonym(s)=DOS%2C OsDOS%2C OsC3H2%2C C3H2%2C OsTZF2%2C OsCCCH-Zn-4;RAP-DB Gene Name Synonym(s)=DELAY OF THE ONSET OF SENESCENCE%2C delay of the onset of senescence%2C Zinc finger CCCH domain-containing protein 2%2C Protein DELAY OF THE ONSET OF SENESCENCE%2C Tandem zinc finger protein 2;CGSNL Gene Symbol=DOS;CGSNL Gene Name=DELAY OF THE ONSET OF SENESCENCE;Oryzabase Gene Symbol Synonym(s)=OsDOS%2C OsC3H2%2C C3H2%2C OsTZF2%2C OsCCCH-Zn-4;Oryzabase Gene Name Synonym(s)=delay of the onset of senescence%2C Zinc finger CCCH domain-containing protein 2%2C Protein DELAY OF THE ONSET OF SENESCENCE%2C Tandem zinc finger protein 2;Note=CCCH-type zinc finger protein%2C Negative regulator  for leaf senescence;Transcript_evidence=AK100770;ORF_evidence=Q9FU27;GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=J023119N23;Manual Curation=October 22%2C 2009;Literature_PMID=16778011;Oryzabase=6120;TENOR=Os01t0192000-01
Chr01	irgsp1_rep	five_prime_UTR	4951013	4951123	.	-	.	Parent=Os01t0192000-01
Chr01	irgsp1_rep	CDS	4949852	4951012	.	-	0	Parent=Os01t0192000-01
Chr01	irgsp1_rep	three_prime_UTR	4949133	4949851	.	-	.	Parent=Os01t0192000-01
Chr01	irgsp1_rep	mRNA	4949133	4950396	.	-	.	ID=Os01t0192000-02;Name=Os01t0192000-02;Locus_id=Os01g0192000;CGSNL Gene Symbol=DOS;CGSNL Gene Name=DELAY OF THE ONSET OF SENESCENCE;Oryzabase Gene Symbol Synonym(s)=OsDOS%2C OsC3H2%2C C3H2%2C OsTZF2%2C OsCCCH-Zn-4;Oryzabase Gene Name Synonym(s)=delay of the onset of senescence%2C Zinc finger CCCH domain-containing protein 2%2C Protein DELAY OF THE ONSET OF SENESCENCE%2C Tandem zinc finger protein 2;Note=Similar to C3H transcription factor.;Transcript_evidence=AK073660 (DDBJ%2C Best hit);ORF_evidence=B7EQW0 (UniProt);NIAS_FLcDNA=J033052J05;Oryzabase=6120;TENOR=Os01t0192000-02
Chr01	irgsp1_rep	five_prime_UTR	4950395	4950396	.	-	.	Parent=Os01t0192000-02
Chr01	irgsp1_rep	CDS	4949852	4950394	.	-	0	Parent=Os01t0192000-02
Chr01	irgsp1_rep	three_prime_UTR	4949133	4949851	.	-	.	Parent=Os01t0192000-02
Chr01	irgsp1_rep	mRNA	4949849	4951508	.	+	.	ID=Os01t0192101-00;Name=Os01t0192101-00;Locus_id=Os01g0192101;Note=Hypothetical protein.;Transcript_evidence=EU957563 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0192101-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	4949849	4950733	.	+	.	Parent=Os01t0192101-00
Chr01	irgsp1_rep	CDS	4950734	4951120	.	+	0	Parent=Os01t0192101-00
Chr01	irgsp1_rep	three_prime_UTR	4951121	4951508	.	+	.	Parent=Os01t0192101-00
Chr01	irgsp1_rep	mRNA	4971466	4973555	.	-	.	ID=Os01t0192300-01;Name=Os01t0192300-01;Locus_id=Os01g0192300;CGSNL Gene Symbol=MYB1R1;CGSNL Gene Name=MYB-RELATED TRANSCRIPTION FACTOR 1;Oryzabase Gene Symbol Synonym(s)=OsMYB1R1%2C 1R-MYB1;Oryzabase Gene Name Synonym(s)=MYB-related transcription factor 1%2C MYB-related 1%2C single MYB-like domain protein 1;Note=Similar to I-box binding factor (Fragment).;Transcript_evidence=AK062109 (DDBJ%2C Best hit);ORF_evidence=B9UK63 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=SANT domain%2C DNA binding (IPR001005),Zinc finger%2C CCHC-type (IPR001878),Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=001-045-B07;Oryzabase=21322;Expression=AK062109;TENOR=Os01t0192300-01;KEGG=Os01t0192300-01
Chr01	irgsp1_rep	five_prime_UTR	4973234	4973555	.	-	.	Parent=Os01t0192300-01
Chr01	irgsp1_rep	CDS	4972867	4973233	.	-	0	Parent=Os01t0192300-01
Chr01	irgsp1_rep	CDS	4972185	4972381	.	-	2	Parent=Os01t0192300-01
Chr01	irgsp1_rep	CDS	4971685	4972053	.	-	0	Parent=Os01t0192300-01
Chr01	irgsp1_rep	three_prime_UTR	4971466	4971684	.	-	.	Parent=Os01t0192300-01
Chr01	irgsp1_rep	mRNA	4972739	4973373	.	-	.	ID=Os01t0192300-02;Name=Os01t0192300-02;Locus_id=Os01g0192300;CGSNL Gene Symbol=MYB1R1;CGSNL Gene Name=MYB-RELATED TRANSCRIPTION FACTOR 1;Oryzabase Gene Symbol Synonym(s)=OsMYB1R1%2C 1R-MYB1;Oryzabase Gene Name Synonym(s)=MYB-related transcription factor 1%2C MYB-related 1%2C single MYB-like domain protein 1;Note=Hypothetical conserved gene.;Transcript_evidence=AK062458 (DDBJ%2C Best hit),AK102403 (DDBJ%2C Best hit);ORF_evidence=Q5SNG5 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878);NIAS_FLcDNA=001-103-D01,J033092K06;Oryzabase=21322;Expression=AK062458;TENOR=Os01t0192300-02;KEGG=Os01t0192300-02
Chr01	irgsp1_rep	five_prime_UTR	4973234	4973373	.	-	.	Parent=Os01t0192300-02
Chr01	irgsp1_rep	CDS	4972790	4973233	.	-	0	Parent=Os01t0192300-02
Chr01	irgsp1_rep	three_prime_UTR	4972739	4972789	.	-	.	Parent=Os01t0192300-02
Chr01	irgsp1_rep	mRNA	4979116	4979875	.	+	.	ID=Os01t0192401-00;Name=Os01t0192401-00;Locus_id=Os01g0192401;Note=Hypothetical gene.;Transcript_evidence=EU949920 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0192401-00;KEGG=Os01t0192401-00
Chr01	irgsp1_rep	CDS	4979116	4979550	.	+	0	Parent=Os01t0192401-00
Chr01	irgsp1_rep	three_prime_UTR	4979551	4979875	.	+	.	Parent=Os01t0192401-00
Chr01	irgsp1_rep	mRNA	4979098	4980028	.	-	.	ID=Os01t0192500-00;Name=Os01t0192500-00;Locus_id=Os01g0192500;Note=Similar to H0525G02.3 protein.;Transcript_evidence=EU964716 (DDBJ);ORF_evidence=Q00RR7 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);TENOR=Os01t0192500-00;KEGG=Os01t0192500-00
Chr01	irgsp1_rep	CDS	4979839	4980028	.	-	0	Parent=Os01t0192500-00
Chr01	irgsp1_rep	CDS	4979098	4979681	.	-	2	Parent=Os01t0192500-00
Chr01	irgsp1_rep	mRNA	4980670	4981942	.	+	.	ID=Os01t0192550-01;Name=Os01t0192550-01;Locus_id=Os01g0192550;Note=Conserved hypothetical protein.;Transcript_evidence=AK241461 (DDBJ%2C Best hit);ORF_evidence=NP_001172217.1 (RefSeq);NIAS_FLcDNA=J065164G16;TENOR=Os01t0192550-01;KEGG=Os01t0192550-01
Chr01	irgsp1_rep	five_prime_UTR	4980670	4980982	.	+	.	Parent=Os01t0192550-01
Chr01	irgsp1_rep	CDS	4980983	4981465	.	+	0	Parent=Os01t0192550-01
Chr01	irgsp1_rep	three_prime_UTR	4981466	4981942	.	+	.	Parent=Os01t0192550-01
Chr01	irgsp1_rep	mRNA	4982182	4985143	.	-	.	ID=Os01t0192600-01;Name=Os01t0192600-01;Locus_id=Os01g0192600;Oryzabase Gene Symbol Synonym(s)=SF21;Oryzabase Gene Name Synonym(s)=pollen-specific protein SF21;Note=Ndr family protein.;Transcript_evidence=AK100731 (DDBJ%2C Best hit);ORF_evidence=B6TFK0 (UniProt);InterPro=Ndr (IPR004142),Pollen specific protein SF21 (IPR015511);NIAS_FLcDNA=J023117I22;Oryzabase=12527;Expression=AK100731;TENOR=Os01t0192600-01;KEGG=Os01t0192600-01
Chr01	irgsp1_rep	five_prime_UTR	4985043	4985143	.	-	.	Parent=Os01t0192600-01
Chr01	irgsp1_rep	CDS	4984983	4985042	.	-	0	Parent=Os01t0192600-01
Chr01	irgsp1_rep	CDS	4984242	4984341	.	-	0	Parent=Os01t0192600-01
Chr01	irgsp1_rep	CDS	4984048	4984145	.	-	2	Parent=Os01t0192600-01
Chr01	irgsp1_rep	CDS	4983862	4983950	.	-	0	Parent=Os01t0192600-01
Chr01	irgsp1_rep	CDS	4983707	4983767	.	-	1	Parent=Os01t0192600-01
Chr01	irgsp1_rep	CDS	4983533	4983619	.	-	0	Parent=Os01t0192600-01
Chr01	irgsp1_rep	CDS	4983373	4983450	.	-	0	Parent=Os01t0192600-01
Chr01	irgsp1_rep	CDS	4983228	4983284	.	-	0	Parent=Os01t0192600-01
Chr01	irgsp1_rep	CDS	4983066	4983121	.	-	0	Parent=Os01t0192600-01
Chr01	irgsp1_rep	CDS	4982841	4982976	.	-	1	Parent=Os01t0192600-01
Chr01	irgsp1_rep	CDS	4982517	4982738	.	-	0	Parent=Os01t0192600-01
Chr01	irgsp1_rep	three_prime_UTR	4982182	4982516	.	-	.	Parent=Os01t0192600-01
Chr01	irgsp1_rep	mRNA	4982399	4985113	.	+	.	ID=Os01t0192700-00;Name=Os01t0192700-00;Locus_id=Os01g0192700;Note=Non-protein coding transcript.;Transcript_evidence=tplb0040a08 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os01t0192700-00
Chr01	irgsp1_rep	exon	4982399	4982736	.	+	.	Parent=Os01t0192700-00
Chr01	irgsp1_rep	exon	4982839	4983016	.	+	.	Parent=Os01t0192700-00
Chr01	irgsp1_rep	exon	4983212	4983283	.	+	.	Parent=Os01t0192700-00
Chr01	irgsp1_rep	exon	4983372	4983453	.	+	.	Parent=Os01t0192700-00
Chr01	irgsp1_rep	exon	4983530	4983610	.	+	.	Parent=Os01t0192700-00
Chr01	irgsp1_rep	exon	4983695	4983769	.	+	.	Parent=Os01t0192700-00
Chr01	irgsp1_rep	exon	4983859	4983950	.	+	.	Parent=Os01t0192700-00
Chr01	irgsp1_rep	exon	4984048	4984145	.	+	.	Parent=Os01t0192700-00
Chr01	irgsp1_rep	exon	4984242	4984335	.	+	.	Parent=Os01t0192700-00
Chr01	irgsp1_rep	exon	4984974	4985113	.	+	.	Parent=Os01t0192700-00
Chr01	irgsp1_rep	mRNA	5002454	5004321	.	-	.	ID=Os01t0192900-00;Name=Os01t0192900-00;Locus_id=Os01g0192900;CGSNL Gene Symbol=ACS5;CGSNL Gene Name=ACC SYNTHASE 5;Oryzabase Gene Symbol Synonym(s)=OsACS5%2C OS-ACS5%2C OsBphi008a;Oryzabase Gene Name Synonym(s)=ACC synthase 5%2C 1-aminocyclopropane-1-carboxylic acid synthase 5;Note=1-aminocyclopropane-1-carboxylate synthase family protein.;Transcript_evidence=BT068927 (DDBJ);ORF_evidence=O24220 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Biological Process: 1-aminocyclopropane-1-carboxylate biosynthetic process (GO:0042218),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: 1-aminocyclopropane-1-carboxylate synthase activity (GO:0016847),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=1-aminocyclopropane-1-carboxylate synthase (IPR001176),Aminotransferases%2C class-I%2C pyridoxal-phosphate-binding site (IPR004838),Aminotransferase%2C class I/classII (IPR004839),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);Oryzabase=6852;TENOR=Os01t0192900-00;KEGG=Os01t0192900-00
Chr01	irgsp1_rep	CDS	5003779	5004321	.	-	0	Parent=Os01t0192900-00
Chr01	irgsp1_rep	CDS	5003493	5003653	.	-	0	Parent=Os01t0192900-00
Chr01	irgsp1_rep	CDS	5002495	5003392	.	-	1	Parent=Os01t0192900-00
Chr01	irgsp1_rep	three_prime_UTR	5002454	5002494	.	-	.	Parent=Os01t0192900-00
Chr01	irgsp1_rep	mRNA	5014697	5015197	.	-	.	ID=Os01t0193250-00;Name=Os01t0193250-00;Locus_id=Os01g0193250;Note=Hypothetical gene.;Transcript_evidence=EU959976 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0193250-00
Chr01	irgsp1_rep	five_prime_UTR	5015197	5015197	.	-	.	Parent=Os01t0193250-00
Chr01	irgsp1_rep	CDS	5014697	5015196	.	-	0	Parent=Os01t0193250-00
Chr01	irgsp1_rep	mRNA	5016279	5018651	.	+	.	ID=Os01t0193400-01;Name=Os01t0193400-01;Locus_id=Os01g0193400;Oryzabase Gene Symbol Synonym(s)=OsSTA6;Note=TNFR/CD27/30/40/95 cysteine-rich region domain containing protein.;Transcript_evidence=AK107005 (DDBJ%2C Best hit);ORF_evidence=B9ETL8 (UniProt);NIAS_FLcDNA=002-120-D05;Oryzabase=19323;Expression=AK107005;TENOR=Os01t0193400-01;KEGG=Os01t0193400-01
Chr01	irgsp1_rep	five_prime_UTR	5016279	5016325	.	+	.	Parent=Os01t0193400-01
Chr01	irgsp1_rep	five_prime_UTR	5016426	5016434	.	+	.	Parent=Os01t0193400-01
Chr01	irgsp1_rep	CDS	5016435	5017267	.	+	0	Parent=Os01t0193400-01
Chr01	irgsp1_rep	CDS	5017352	5017640	.	+	1	Parent=Os01t0193400-01
Chr01	irgsp1_rep	three_prime_UTR	5017641	5017876	.	+	.	Parent=Os01t0193400-01
Chr01	irgsp1_rep	three_prime_UTR	5018216	5018651	.	+	.	Parent=Os01t0193400-01
Chr01	irgsp1_rep	mRNA	5016287	5017878	.	+	.	ID=Os01t0193400-02;Name=Os01t0193400-02;Locus_id=Os01g0193400;Oryzabase Gene Symbol Synonym(s)=OsSTA6;Note=TNFR/CD27/30/40/95 cysteine-rich region domain containing protein.;Transcript_evidence=AK069948 (DDBJ%2C Best hit);ORF_evidence=B9ETL8 (UniProt);NIAS_FLcDNA=J023035M20;Oryzabase=19323;Expression=AK069948;TENOR=Os01t0193400-02;KEGG=Os01t0193400-02
Chr01	irgsp1_rep	five_prime_UTR	5016287	5016434	.	+	.	Parent=Os01t0193400-02
Chr01	irgsp1_rep	CDS	5016435	5017267	.	+	0	Parent=Os01t0193400-02
Chr01	irgsp1_rep	CDS	5017352	5017640	.	+	1	Parent=Os01t0193400-02
Chr01	irgsp1_rep	three_prime_UTR	5017641	5017878	.	+	.	Parent=Os01t0193400-02
Chr01	irgsp1_rep	mRNA	5016351	5017845	.	+	.	ID=Os01t0193400-03;Name=Os01t0193400-03;Locus_id=Os01g0193400;Oryzabase Gene Symbol Synonym(s)=OsSTA6;Note=TNFR/CD27/30/40/95 cysteine-rich region domain containing protein.;Transcript_evidence=AK099271 (DDBJ%2C Best hit);ORF_evidence=B9ETL8 (UniProt);NIAS_FLcDNA=J023020E22;Oryzabase=19323;Expression=AK099271;TENOR=Os01t0193400-03;KEGG=Os01t0193400-03
Chr01	irgsp1_rep	five_prime_UTR	5016351	5016434	.	+	.	Parent=Os01t0193400-03
Chr01	irgsp1_rep	CDS	5016435	5017267	.	+	0	Parent=Os01t0193400-03
Chr01	irgsp1_rep	CDS	5017352	5017640	.	+	1	Parent=Os01t0193400-03
Chr01	irgsp1_rep	three_prime_UTR	5017641	5017845	.	+	.	Parent=Os01t0193400-03
Chr01	irgsp1_rep	mRNA	5017893	5020150	.	+	.	ID=Os01t0193400-04;Name=Os01t0193400-04;Locus_id=Os01g0193400;Oryzabase Gene Symbol Synonym(s)=OsSTA6;Note=Hypothetical gene.;Transcript_evidence=AK287954 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J075046P20;Oryzabase=19323;TENOR=Os01t0193400-04;KEGG=Os01t0193400-04
Chr01	irgsp1_rep	five_prime_UTR	5017893	5019061	.	+	.	Parent=Os01t0193400-04
Chr01	irgsp1_rep	CDS	5019062	5019066	.	+	0	Parent=Os01t0193400-04
Chr01	irgsp1_rep	CDS	5019572	5020052	.	+	1	Parent=Os01t0193400-04
Chr01	irgsp1_rep	three_prime_UTR	5020053	5020150	.	+	.	Parent=Os01t0193400-04
Chr01	irgsp1_rep	mRNA	5018103	5020088	.	-	.	ID=Os01t0193500-00;Name=Os01t0193500-00;Locus_id=Os01g0193500;Note=Conserved hypothetical protein.;Transcript_evidence=AK353821 (DDBJ);ORF_evidence=NP_001042281.1 (RefSeq);TENOR=Os01t0193500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	5020086	5020088	.	-	.	Parent=Os01t0193500-00
Chr01	irgsp1_rep	CDS	5019572	5020085	.	-	0	Parent=Os01t0193500-00
Chr01	irgsp1_rep	CDS	5018219	5019066	.	-	2	Parent=Os01t0193500-00
Chr01	irgsp1_rep	three_prime_UTR	5018103	5018218	.	-	.	Parent=Os01t0193500-00
Chr01	irgsp1_rep	mRNA	5021104	5025704	.	-	.	ID=Os01t0193600-01;Name=Os01t0193600-01;Locus_id=Os01g0193600;Note=Methyltransferase small domain containing protein.;Transcript_evidence=AK068784 (DDBJ%2C Best hit);ORF_evidence=NP_188767.2 (RefSeq);GO=Biological Process: RNA processing (GO:0006396),Molecular Function: RNA binding (GO:0003723),Molecular Function: RNA methyltransferase activity (GO:0008173);InterPro=23S rRNA methyltransferase/RumA (IPR001566),Deoxyribonuclease/rho motif-related TRAM (IPR002792),(Uracil-5)-methyltransferase (IPR010280),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=J013158G21;Expression=AK068784;TENOR=Os01t0193600-01;KEGG=Os01t0193600-01
Chr01	irgsp1_rep	five_prime_UTR	5025668	5025704	.	-	.	Parent=Os01t0193600-01
Chr01	irgsp1_rep	CDS	5025077	5025667	.	-	0	Parent=Os01t0193600-01
Chr01	irgsp1_rep	CDS	5024807	5024992	.	-	0	Parent=Os01t0193600-01
Chr01	irgsp1_rep	CDS	5024153	5024262	.	-	0	Parent=Os01t0193600-01
Chr01	irgsp1_rep	CDS	5023570	5023678	.	-	1	Parent=Os01t0193600-01
Chr01	irgsp1_rep	CDS	5023226	5023381	.	-	0	Parent=Os01t0193600-01
Chr01	irgsp1_rep	CDS	5022950	5023065	.	-	0	Parent=Os01t0193600-01
Chr01	irgsp1_rep	CDS	5022619	5022785	.	-	1	Parent=Os01t0193600-01
Chr01	irgsp1_rep	CDS	5022364	5022494	.	-	2	Parent=Os01t0193600-01
Chr01	irgsp1_rep	CDS	5022159	5022266	.	-	0	Parent=Os01t0193600-01
Chr01	irgsp1_rep	three_prime_UTR	5022083	5022158	.	-	.	Parent=Os01t0193600-01
Chr01	irgsp1_rep	three_prime_UTR	5021104	5021622	.	-	.	Parent=Os01t0193600-01
Chr01	irgsp1_rep	mRNA	5022112	5025748	.	+	.	ID=Os01t0193700-00;Name=Os01t0193700-00;Locus_id=Os01g0193700;Note=Hypothetical protein.;Transcript_evidence=tplb0022j08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0193700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	5022112	5022265	.	+	.	Parent=Os01t0193700-00
Chr01	irgsp1_rep	five_prime_UTR	5022363	5022494	.	+	.	Parent=Os01t0193700-00
Chr01	irgsp1_rep	five_prime_UTR	5022619	5022788	.	+	.	Parent=Os01t0193700-00
Chr01	irgsp1_rep	five_prime_UTR	5022957	5023050	.	+	.	Parent=Os01t0193700-00
Chr01	irgsp1_rep	five_prime_UTR	5023213	5023378	.	+	.	Parent=Os01t0193700-00
Chr01	irgsp1_rep	five_prime_UTR	5023567	5023648	.	+	.	Parent=Os01t0193700-00
Chr01	irgsp1_rep	CDS	5023649	5023669	.	+	0	Parent=Os01t0193700-00
Chr01	irgsp1_rep	CDS	5024143	5024260	.	+	0	Parent=Os01t0193700-00
Chr01	irgsp1_rep	CDS	5024805	5024992	.	+	2	Parent=Os01t0193700-00
Chr01	irgsp1_rep	CDS	5025077	5025748	.	+	0	Parent=Os01t0193700-00
Chr01	irgsp1_rep	mRNA	5030157	5037142	.	+	.	ID=Os01t0193900-01;Name=Os01t0193900-01;Locus_id=Os01g0193900;CGSNL Gene Symbol=ALYL1;CGSNL Gene Name=ALWAYS EARLYLIKE 1;Oryzabase Gene Symbol Synonym(s)=OsALYL1;Oryzabase Gene Name Synonym(s)=ALWAYS EARLYLIKE1;Note=Homeodomain-like domain containing protein.;Transcript_evidence=AK064472 (DDBJ%2C Best hit);ORF_evidence=B9ETM1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Homeodomain-like (IPR009057),DIRP (IPR010561),Myb%2C DNA-binding (IPR014778),SANT%2C eukarya (IPR017884);NIAS_FLcDNA=002-110-H06;Oryzabase=8279;TENOR=Os01t0193900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	5030157	5030177	.	+	0	Parent=Os01t0193900-01
Chr01	irgsp1_rep	CDS	5030303	5030398	.	+	0	Parent=Os01t0193900-01
Chr01	irgsp1_rep	CDS	5030494	5030556	.	+	0	Parent=Os01t0193900-01
Chr01	irgsp1_rep	CDS	5030836	5030913	.	+	0	Parent=Os01t0193900-01
Chr01	irgsp1_rep	CDS	5031443	5031614	.	+	0	Parent=Os01t0193900-01
Chr01	irgsp1_rep	CDS	5031797	5032180	.	+	2	Parent=Os01t0193900-01
Chr01	irgsp1_rep	CDS	5032959	5033042	.	+	2	Parent=Os01t0193900-01
Chr01	irgsp1_rep	CDS	5033143	5033288	.	+	2	Parent=Os01t0193900-01
Chr01	irgsp1_rep	CDS	5033810	5034070	.	+	0	Parent=Os01t0193900-01
Chr01	irgsp1_rep	CDS	5034147	5034328	.	+	0	Parent=Os01t0193900-01
Chr01	irgsp1_rep	CDS	5034421	5034703	.	+	1	Parent=Os01t0193900-01
Chr01	irgsp1_rep	CDS	5035702	5035896	.	+	0	Parent=Os01t0193900-01
Chr01	irgsp1_rep	CDS	5036088	5036303	.	+	0	Parent=Os01t0193900-01
Chr01	irgsp1_rep	CDS	5036388	5036540	.	+	0	Parent=Os01t0193900-01
Chr01	irgsp1_rep	CDS	5036630	5036827	.	+	0	Parent=Os01t0193900-01
Chr01	irgsp1_rep	three_prime_UTR	5036828	5037142	.	+	.	Parent=Os01t0193900-01
Chr01	irgsp1_rep	mRNA	5035823	5038482	.	+	.	ID=Os01t0193900-02;Name=Os01t0193900-02;Locus_id=Os01g0193900;CGSNL Gene Symbol=ALYL1;CGSNL Gene Name=ALWAYS EARLYLIKE 1;Oryzabase Gene Symbol Synonym(s)=OsALYL1;Oryzabase Gene Name Synonym(s)=ALWAYS EARLYLIKE1;Note=Hypothetical conserved gene.;Transcript_evidence=AK110899 (DDBJ%2C Best hit);ORF_evidence=B9ETM1 (UniProt);NIAS_FLcDNA=002-173-A11;Oryzabase=8279;Expression=AK110899;TENOR=Os01t0193900-02;KEGG=Os01t0193900-02
Chr01	irgsp1_rep	five_prime_UTR	5035823	5035824	.	+	.	Parent=Os01t0193900-02
Chr01	irgsp1_rep	CDS	5035825	5035896	.	+	0	Parent=Os01t0193900-02
Chr01	irgsp1_rep	CDS	5036088	5036303	.	+	0	Parent=Os01t0193900-02
Chr01	irgsp1_rep	CDS	5036388	5036540	.	+	0	Parent=Os01t0193900-02
Chr01	irgsp1_rep	CDS	5036630	5036827	.	+	0	Parent=Os01t0193900-02
Chr01	irgsp1_rep	three_prime_UTR	5036828	5036995	.	+	.	Parent=Os01t0193900-02
Chr01	irgsp1_rep	three_prime_UTR	5037329	5037371	.	+	.	Parent=Os01t0193900-02
Chr01	irgsp1_rep	three_prime_UTR	5037628	5038482	.	+	.	Parent=Os01t0193900-02
Chr01	irgsp1_rep	mRNA	5037406	5039252	.	-	.	ID=Os01t0194000-01;Name=Os01t0194000-01;Locus_id=Os01g0194000;Note=Conserved hypothetical protein.;Transcript_evidence=AK071994 (DDBJ%2C Best hit);ORF_evidence=A2WLM7 (UniProt);NIAS_FLcDNA=J013091M18;TENOR=Os01t0194000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	5039067	5039252	.	-	0	Parent=Os01t0194000-01
Chr01	irgsp1_rep	CDS	5038529	5038957	.	-	0	Parent=Os01t0194000-01
Chr01	irgsp1_rep	CDS	5037592	5038428	.	-	0	Parent=Os01t0194000-01
Chr01	irgsp1_rep	three_prime_UTR	5037406	5037591	.	-	.	Parent=Os01t0194000-01
Chr01	irgsp1_rep	mRNA	5037239	5038996	.	-	.	ID=Os01t0194000-02;Name=Os01t0194000-02;Locus_id=Os01g0194000;Note=Hypothetical conserved gene.;Transcript_evidence=AK058353 (DDBJ%2C Best hit);ORF_evidence=A2WLM7 (UniProt);NIAS_FLcDNA=001-014-E09;Expression=AK058353;TENOR=Os01t0194000-02;KEGG=Os01t0194000-02
Chr01	irgsp1_rep	five_prime_UTR	5038964	5038996	.	-	.	Parent=Os01t0194000-02
Chr01	irgsp1_rep	CDS	5038529	5038963	.	-	0	Parent=Os01t0194000-02
Chr01	irgsp1_rep	CDS	5037592	5038428	.	-	0	Parent=Os01t0194000-02
Chr01	irgsp1_rep	three_prime_UTR	5037239	5037591	.	-	.	Parent=Os01t0194000-02
Chr01	irgsp1_rep	mRNA	5053133	5055753	.	-	.	ID=Os01t0194200-01;Name=Os01t0194200-01;Locus_id=Os01g0194200;Note=IQ calmodulin-binding region domain containing protein.;Transcript_evidence=AK073282 (DDBJ%2C Best hit);ORF_evidence=NP_001151471.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);NIAS_FLcDNA=J033027F11;Expression=AK073282;TENOR=Os01t0194200-01;KEGG=Os01t0194200-01
Chr01	irgsp1_rep	five_prime_UTR	5055637	5055753	.	-	.	Parent=Os01t0194200-01
Chr01	irgsp1_rep	CDS	5055568	5055636	.	-	0	Parent=Os01t0194200-01
Chr01	irgsp1_rep	CDS	5054736	5055035	.	-	0	Parent=Os01t0194200-01
Chr01	irgsp1_rep	CDS	5054429	5054656	.	-	0	Parent=Os01t0194200-01
Chr01	irgsp1_rep	CDS	5054182	5054319	.	-	0	Parent=Os01t0194200-01
Chr01	irgsp1_rep	CDS	5053390	5053983	.	-	0	Parent=Os01t0194200-01
Chr01	irgsp1_rep	three_prime_UTR	5053133	5053389	.	-	.	Parent=Os01t0194200-01
Chr01	irgsp1_rep	mRNA	5060605	5065209	.	-	.	ID=Os01t0194300-01;Name=Os01t0194300-01;Locus_id=Os01g0194300;RAP-DB Gene Symbol Synonym(s)=NH1%2C OsNH1%2C OsNPR1%2C OsNPR1/NH1%2C NPR1%2C OsPR2%2C PR2;RAP-DB Gene Name Synonym(s)=NPR1 HOMOLOG 1%2C NPR1-like 1%2C NPR1 homologue 1%2C nonexpresser of PR genes 1%2C Arabidopsis NPR1 homolog 1%2C non-expressor of pathogenesis-related gene 1%2C Arabidopsis NPR1 homologue 1%2C pathogenesis-related gene 2%2C nonexpressor of PR genes 1%2C Nonexpressor of Pathogenesis-Related Genes1%2C NONEXPRESSOR OF PATHOGENESIS-RELATED1 HOMOLOG1;CGSNL Gene Symbol=NH1;CGSNL Gene Name=NPR1 HOMOLOG 1;Oryzabase Gene Symbol Synonym(s)=OsNH1%2C OsNPR1%2C OsNPR1/NH1%2C NPR1%2C OsPR2%2C PR2%2C DLN5%2C OsDLN5;Oryzabase Gene Name Synonym(s)=NPR1-like 1%2C NPR1 homologue 1%2C nonexpresser of PR genes 1%2C Arabidopsis NPR1 homolog 1%2C non-expressor of pathogenesis-related gene 1%2C Arabidopsis NPR1 homologue 1%2C pathogenesis-related gene 2%2C nonexpressor of PR genes 1%2C Nonexpressor of Pathogenesis-Related Genes1%2C NONEXPRESSOR OF PATHOGENESIS-RELATED1 HOMOLOG1%2C NONEXPRESSOR OF PATHOGENESIS-RELATED GENES1%2C non-expressor pathogenesis-related 1%2C DLN repressor 5%2C DLN motif protein 5;Note=Ankyrin-repeat protein%2C Herbivore-induced defense response%2C Blast disease resistance;Transcript_evidence=DQ450947,AK120715;ORF_evidence=Q9FDY4;GO=Molecular Function: protein binding (GO:0005515);InterPro=SKP1/BTB/POZ domain (IPR011333),BTB/POZ domain (IPR000210),Regulatory protein NPR%2C central domain (IPR024228),Ankyrin repeat-containing domain (IPR020683),NPR1/NIM1-like%2C C-terminal (IPR021094),Ankyrin repeat (IPR002110);NIAS_FLcDNA=J023002C09;Manual Curation=May 23%2C 2016;Literature_PMID=22694163,20924648,17309686;Oryzabase=7370;Expression=AK120715;TENOR=Os01t0194300-01;KEGG=Os01t0194300-01
Chr01	irgsp1_rep	five_prime_UTR	5065121	5065209	.	-	.	Parent=Os01t0194300-01
Chr01	irgsp1_rep	CDS	5064560	5065120	.	-	0	Parent=Os01t0194300-01
Chr01	irgsp1_rep	CDS	5062091	5062838	.	-	0	Parent=Os01t0194300-01
Chr01	irgsp1_rep	CDS	5061682	5061882	.	-	2	Parent=Os01t0194300-01
Chr01	irgsp1_rep	CDS	5060881	5061119	.	-	2	Parent=Os01t0194300-01
Chr01	irgsp1_rep	three_prime_UTR	5060605	5060880	.	-	.	Parent=Os01t0194300-01
Chr01	irgsp1_rep	mRNA	5085833	5086504	.	+	.	ID=Os01t0194600-02;Name=Os01t0194600-02;Locus_id=Os01g0194600;CGSNL Gene Symbol=GRX2;CGSNL Gene Name=GLUTAREDOXIN 2;Oryzabase Gene Symbol Synonym(s)=OsGRX2;Oryzabase Gene Name Synonym(s)=glutaredoxin 2;Note=Thioredoxin fold domain containing protein.;Transcript_evidence=AK102031 (DDBJ%2C Best hit),AK101203 (DDBJ%2C Best hit);ORF_evidence=Q5SMY5 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin (IPR002109),Glutaredoxin-like%2C plant II (IPR011905),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=J033081A01,J033030N21;Oryzabase=13564;Expression=AK102031;TENOR=Os01t0194600-02;KEGG=Os01t0194600-02
Chr01	irgsp1_rep	five_prime_UTR	5085833	5085919	.	+	.	Parent=Os01t0194600-02
Chr01	irgsp1_rep	CDS	5085920	5086297	.	+	0	Parent=Os01t0194600-02
Chr01	irgsp1_rep	three_prime_UTR	5086298	5086504	.	+	.	Parent=Os01t0194600-02
Chr01	irgsp1_rep	mRNA	5099555	5102080	.	+	.	ID=Os01t0195000-01;Name=Os01t0195000-01;Locus_id=Os01g0195000;RAP-DB Gene Symbol Synonym(s)=OsIDD2;RAP-DB Gene Name Synonym(s)=INDETERMINATE DOMAIN2;CGSNL Gene Symbol=IDD2;CGSNL Gene Name=INDETERMINATE DOMAIN 2;Oryzabase Gene Symbol Synonym(s)=OsIDD2;Oryzabase Gene Name Synonym(s)=indeterminate domain 2;Note=Zinc finger and indeterminate domain (IDD) family transcription factor%2C Regulation of secondary cell wall formation;Transcript_evidence=AK105663;ORF_evidence=Q5SMY2;GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Zinc finger C2H2 superfamily (IPR036236),Zinc finger C2H2-type (IPR013087);NIAS_FLcDNA=001-200-H06;Manual Curation=January 21%2C 2020;Literature_PMID=28574161;Oryzabase=13150;Expression=AK105663;TENOR=Os01t0195000-01;KEGG=Os01t0195000-01
Chr01	irgsp1_rep	five_prime_UTR	5099555	5100025	.	+	.	Parent=Os01t0195000-01
Chr01	irgsp1_rep	CDS	5100026	5100188	.	+	0	Parent=Os01t0195000-01
Chr01	irgsp1_rep	CDS	5100262	5100661	.	+	2	Parent=Os01t0195000-01
Chr01	irgsp1_rep	CDS	5100748	5101648	.	+	1	Parent=Os01t0195000-01
Chr01	irgsp1_rep	three_prime_UTR	5101649	5102080	.	+	.	Parent=Os01t0195000-01
Chr01	irgsp1_rep	mRNA	5102129	5102343	.	+	.	ID=Os01t0195066-00;Name=Os01t0195066-00;Locus_id=Os01g0195066;Note=Non-protein coding transcript.;Transcript_evidence=CT834794 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os01t0195066-00
Chr01	irgsp1_rep	exon	5102129	5102343	.	+	.	Parent=Os01t0195066-00
Chr01	irgsp1_rep	mRNA	5103843	5108907	.	-	.	ID=Os01t0195100-01;Name=Os01t0195100-01;Locus_id=Os01g0195100;Note=Non-protein coding transcript.;Transcript_evidence=AK121095 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023067I09;TENOR=Os01t0195100-01
Chr01	irgsp1_rep	exon	5108640	5108907	.	-	.	Parent=Os01t0195100-01
Chr01	irgsp1_rep	exon	5103843	5104214	.	-	.	Parent=Os01t0195100-01
Chr01	irgsp1_rep	mRNA	5109949	5112457	.	-	.	ID=Os01t0195200-01;Name=Os01t0195200-01;Locus_id=Os01g0195200;Note=Similar to Serine/threonine-protein kinase PBS1 (EC 2.7.1.37) (AvrPphB susceptible protein 1).;Transcript_evidence=AK105501 (DDBJ%2C Best hit);ORF_evidence=C6ZRT8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-127-D06;Expression=AK105501;TENOR=Os01t0195200-01;KEGG=Os01t0195200-01 (EC:2.7.1.37)
Chr01	irgsp1_rep	five_prime_UTR	5112457	5112457	.	-	.	Parent=Os01t0195200-01
Chr01	irgsp1_rep	CDS	5112390	5112456	.	-	0	Parent=Os01t0195200-01
Chr01	irgsp1_rep	CDS	5111519	5111917	.	-	2	Parent=Os01t0195200-01
Chr01	irgsp1_rep	CDS	5111196	5111439	.	-	2	Parent=Os01t0195200-01
Chr01	irgsp1_rep	CDS	5110476	5111112	.	-	1	Parent=Os01t0195200-01
Chr01	irgsp1_rep	three_prime_UTR	5109949	5110475	.	-	.	Parent=Os01t0195200-01
Chr01	irgsp1_rep	mRNA	5128137	5128696	.	-	.	ID=Os01t0195300-00;Name=Os01t0195300-00;Locus_id=Os01g0195300;Note=Hypothetical conserved gene.;Transcript_evidence=BT016482 (DDBJ);ORF_evidence=Q5SMY0 (UniProt);TENOR=Os01t0195300-00;KEGG=Os01t0195300-00
Chr01	irgsp1_rep	five_prime_UTR	5128608	5128696	.	-	.	Parent=Os01t0195300-00
Chr01	irgsp1_rep	CDS	5128149	5128607	.	-	0	Parent=Os01t0195300-00
Chr01	irgsp1_rep	three_prime_UTR	5128137	5128148	.	-	.	Parent=Os01t0195300-00
Chr01	irgsp1_rep	mRNA	5131629	5132915	.	-	.	ID=Os01t0195400-00;Name=Os01t0195400-00;Locus_id=Os01g0195400;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=CU406162 (DDBJ%2C Best hit);ORF_evidence=NP_001152664.1 (RefSeq);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);TENOR=Os01t0195400-00;KEGG=Os01t0195400-00
Chr01	irgsp1_rep	five_prime_UTR	5132874	5132915	.	-	.	Parent=Os01t0195400-00
Chr01	irgsp1_rep	CDS	5132007	5132873	.	-	0	Parent=Os01t0195400-00
Chr01	irgsp1_rep	three_prime_UTR	5131629	5132006	.	-	.	Parent=Os01t0195400-00
Chr01	irgsp1_rep	mRNA	5138518	5140925	.	-	.	ID=Os01t0195500-01;Name=Os01t0195500-01;Locus_id=Os01g0195500;Note=Translation initiation factor SUI1 domain containing protein.;Transcript_evidence=AK070619 (DDBJ%2C Best hit);ORF_evidence=B4FB35 (UniProt);GO=Biological Process: translational initiation (GO:0006413),Molecular Function: translation initiation factor activity (GO:0003743);InterPro=Translation initiation factor SUI1 (IPR001950),Density-regulated protein DRP1 (IPR005873);NIAS_FLcDNA=J023062L17;Expression=AK070619;TENOR=Os01t0195500-01;KEGG=Os01t0195500-01
Chr01	irgsp1_rep	five_prime_UTR	5140748	5140925	.	-	.	Parent=Os01t0195500-01
Chr01	irgsp1_rep	CDS	5140504	5140747	.	-	0	Parent=Os01t0195500-01
Chr01	irgsp1_rep	CDS	5140282	5140346	.	-	2	Parent=Os01t0195500-01
Chr01	irgsp1_rep	CDS	5139854	5139935	.	-	0	Parent=Os01t0195500-01
Chr01	irgsp1_rep	CDS	5139595	5139662	.	-	2	Parent=Os01t0195500-01
Chr01	irgsp1_rep	CDS	5139420	5139503	.	-	0	Parent=Os01t0195500-01
Chr01	irgsp1_rep	CDS	5138787	5138843	.	-	0	Parent=Os01t0195500-01
Chr01	irgsp1_rep	three_prime_UTR	5138518	5138786	.	-	.	Parent=Os01t0195500-01
Chr01	irgsp1_rep	mRNA	5148879	5149201	.	+	.	ID=Os01t0195700-00;Name=Os01t0195700-00;Locus_id=Os01g0195700;CGSNL Gene Symbol=BHLH27;CGSNL Gene Name=BASIC HELIX-LOOP-HELIX PROTEIN 27;Oryzabase Gene Symbol Synonym(s)=OsbHLH027%2C OsbHLH27%2C bHLH027%2C bHLH27;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 027;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9EZD7 (UniProt);Oryzabase=15318;TENOR=Os01t0195700-00;KEGG=Os01t0195700-00
Chr01	irgsp1_rep	CDS	5148879	5148976	.	+	0	Parent=Os01t0195700-00
Chr01	irgsp1_rep	CDS	5149087	5149201	.	+	1	Parent=Os01t0195700-00
Chr01	irgsp1_rep	mRNA	5149335	5150341	.	+	.	ID=Os01t0195801-00;Name=Os01t0195801-00;Locus_id=Os01g0195801;CGSNL Gene Symbol=BHLH27;CGSNL Gene Name=BASIC HELIX-LOOP-HELIX PROTEIN 27;Oryzabase Gene Symbol Synonym(s)=OsbHLH027%2C OsbHLH27%2C bHLH027%2C bHLH27;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 027;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001042292.1 (RefSeq);InterPro=Helix-loop-helix DNA-binding (IPR011598);Oryzabase=15318;TENOR=Os01t0195801-00;KEGG=Os01t0195801-00
Chr01	irgsp1_rep	CDS	5149335	5149973	.	+	0	Parent=Os01t0195801-00
Chr01	irgsp1_rep	CDS	5150111	5150341	.	+	0	Parent=Os01t0195801-00
Chr01	irgsp1_rep	mRNA	5196418	5197056	.	+	.	ID=Os01t0196133-00;Name=Os01t0196133-00;Locus_id=Os01g0196133;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);InterPro=Ribonuclease H1%2C N-terminal (IPR011320);TENOR=Os01t0196133-00
Chr01	irgsp1_rep	five_prime_UTR	5196418	5196421	.	+	.	Parent=Os01t0196133-00
Chr01	irgsp1_rep	CDS	5196422	5196952	.	+	0	Parent=Os01t0196133-00
Chr01	irgsp1_rep	three_prime_UTR	5196953	5197056	.	+	.	Parent=Os01t0196133-00
Chr01	irgsp1_rep	mRNA	5201862	5203996	.	+	.	ID=Os01t0196300-01;Name=Os01t0196300-01;Locus_id=Os01g0196300;RAP-DB Gene Symbol Synonym(s)=DPF%2C OsbHLH025;RAP-DB Gene Name Synonym(s)=DITERPENOID PHYTOALEXIN FACTOR%2C basic helix-loop-helix protein 025;CGSNL Gene Symbol=DPF;CGSNL Gene Name=DITERPENIOD PHYTOALEXIN FACTOR;Oryzabase Gene Symbol Synonym(s)=OsbHLH025%2C bHLH025%2C bHLH25;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 025;Note=Basic helix-loop-helix (bHLH) transcription factor%2C Diterpenoid phytoalexin factor%2C Biosynthesis of diterpenoid phytoalexins%2C Stress response;Transcript_evidence=AK102964,HQ858870;ORF_evidence=Q5SMX4;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);NIAS_FLcDNA=J033115I17;Manual Curation=January 6%2C 2016;Literature_PMID=26506081,18987217;Oryzabase=15316;Expression=AK102964;TENOR=Os01t0196300-01;KEGG=Os01t0196300-01
Chr01	irgsp1_rep	five_prime_UTR	5201862	5202088	.	+	.	Parent=Os01t0196300-01
Chr01	irgsp1_rep	CDS	5202089	5202177	.	+	0	Parent=Os01t0196300-01
Chr01	irgsp1_rep	CDS	5202325	5202391	.	+	1	Parent=Os01t0196300-01
Chr01	irgsp1_rep	CDS	5202494	5203183	.	+	0	Parent=Os01t0196300-01
Chr01	irgsp1_rep	CDS	5203321	5203794	.	+	0	Parent=Os01t0196300-01
Chr01	irgsp1_rep	three_prime_UTR	5203795	5203996	.	+	.	Parent=Os01t0196300-01
Chr01	irgsp1_rep	mRNA	5213979	5216701	.	-	.	ID=Os01t0196500-01;Name=Os01t0196500-01;Locus_id=Os01g0196500;Note=Prenylated rab acceptor PRA1 family protein.;Transcript_evidence=AK243372 (DDBJ%2C Best hit);ORF_evidence=NP_001148484.1 (RefSeq);InterPro=Prenylated rab acceptor PRA1 (IPR004895);NIAS_FLcDNA=J100062J10;TENOR=Os01t0196500-01;KEGG=Os01t0196500-01
Chr01	irgsp1_rep	five_prime_UTR	5216623	5216701	.	-	.	Parent=Os01t0196500-01
Chr01	irgsp1_rep	CDS	5216017	5216622	.	-	0	Parent=Os01t0196500-01
Chr01	irgsp1_rep	three_prime_UTR	5216011	5216016	.	-	.	Parent=Os01t0196500-01
Chr01	irgsp1_rep	three_prime_UTR	5213979	5214360	.	-	.	Parent=Os01t0196500-01
Chr01	irgsp1_rep	mRNA	5218573	5220335	.	+	.	ID=Os01t0196600-01;Name=Os01t0196600-01;Locus_id=Os01g0196600;Note=Similar to 260 kDa major acidic fibroblast growth factor-stimulated phosphoprotein (Fragment).;Transcript_evidence=AK101742 (DDBJ%2C Best hit);ORF_evidence=Q42974 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase (IPR002591),Alkaline phosphatase-like%2C alpha/beta/alpha (IPR017849),Alkaline-phosphatase-like%2C core domain (IPR017850);NIAS_FLcDNA=J033061M15;Expression=AK101742;TENOR=Os01t0196600-01;KEGG=Os01t0196600-01 (EC:3.1.3.1%2C EC:3.1.4.1%2C EC:3.6.1.9)
Chr01	irgsp1_rep	five_prime_UTR	5218573	5218632	.	+	.	Parent=Os01t0196600-01
Chr01	irgsp1_rep	CDS	5218633	5220072	.	+	0	Parent=Os01t0196600-01
Chr01	irgsp1_rep	three_prime_UTR	5220073	5220335	.	+	.	Parent=Os01t0196600-01
Chr01	irgsp1_rep	mRNA	5227044	5229966	.	+	.	ID=Os01t0196800-01;Name=Os01t0196800-01;Locus_id=Os01g0196800;Note=Hypothetical protein.;Transcript_evidence=AK072341 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023052M08;Expression=AK072341;TENOR=Os01t0196800-01;KEGG=Os01t0196800-01
Chr01	irgsp1_rep	five_prime_UTR	5227044	5228808	.	+	.	Parent=Os01t0196800-01
Chr01	irgsp1_rep	CDS	5228809	5229129	.	+	0	Parent=Os01t0196800-01
Chr01	irgsp1_rep	three_prime_UTR	5229130	5229966	.	+	.	Parent=Os01t0196800-01
Chr01	irgsp1_rep	mRNA	5236623	5244023	.	+	.	ID=Os01t0197100-01;Name=Os01t0197100-01;Locus_id=Os01g0197100;RAP-DB Gene Symbol Synonym(s)=D2%2C D2a%2C CYP90D2/D2%2C d2%2C dwf2%2C CYP90D2%2C D2/CYP90D2%2C OsD2;RAP-DB Gene Name Synonym(s)=DWARF EBISU%2C ebisu dwarf%2C dwarf-2%2C cytoChrome P450%2C CYP90D2%2C Ebisu dwarf/Dwarf2%2C Dwarf2;CGSNL Gene Symbol=D2;CGSNL Gene Name=DWARF EBISU;Oryzabase Gene Symbol Synonym(s)=d2%2C dwf2%2C CYP90D2%2C D2/CYP90D2%2C OsD2%2C SMG11%2C OsSMG11%2C D2/SMG11;Oryzabase Gene Name Synonym(s)=ebisu dwarf%2C dwarf-2%2C cytoChrome P450 CYP90D2%2C Ebisu dwarf/Dwarf2%2C Dwarf2%2C SMALL GRAIN 11;Note=CytoChrome P450%2C Brassinosteroids biosynthesis%2C Regulation of plant architecture;Transcript_evidence=NM_001048832;ORF_evidence=Q94IW5;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);Manual Curation=February 18%2C 2015;Literature_PMID=14615594,23902579;Oryzabase=423;TENOR=Os01t0197100-00
Chr01	irgsp1_rep	CDS	5236623	5236873	.	+	0	Parent=Os01t0197100-01
Chr01	irgsp1_rep	CDS	5236958	5237285	.	+	1	Parent=Os01t0197100-01
Chr01	irgsp1_rep	CDS	5237786	5237935	.	+	0	Parent=Os01t0197100-01
Chr01	irgsp1_rep	CDS	5238255	5238503	.	+	0	Parent=Os01t0197100-01
Chr01	irgsp1_rep	CDS	5239581	5239670	.	+	0	Parent=Os01t0197100-01
Chr01	irgsp1_rep	CDS	5239781	5239966	.	+	0	Parent=Os01t0197100-01
Chr01	irgsp1_rep	CDS	5240477	5240598	.	+	0	Parent=Os01t0197100-01
Chr01	irgsp1_rep	CDS	5243915	5244011	.	+	1	Parent=Os01t0197100-01
Chr01	irgsp1_rep	three_prime_UTR	5244012	5244023	.	+	.	Parent=Os01t0197100-01
Chr01	irgsp1_rep	mRNA	5238162	5244520	.	+	.	ID=Os01t0197100-02;Name=Os01t0197100-02;Locus_id=Os01g0197100;RAP-DB Gene Symbol Synonym(s)=D2%2C D2b%2C CYP90D2/D2%2C d2%2C dwf2%2C CYP90D2%2C D2/CYP90D2%2C OsD2;RAP-DB Gene Name Synonym(s)=DWARF EBISU%2C ebisu dwarf%2C dwarf-2%2C cytoChrome P450%2C CYP90D2%2C Ebisu dwarf/Dwarf2%2C Dwarf2;CGSNL Gene Symbol=D2;CGSNL Gene Name=DWARF EBISU;Oryzabase Gene Symbol Synonym(s)=d2%2C dwf2%2C CYP90D2%2C D2/CYP90D2%2C OsD2%2C SMG11%2C OsSMG11%2C D2/SMG11;Oryzabase Gene Name Synonym(s)=ebisu dwarf%2C dwarf-2%2C cytoChrome P450 CYP90D2%2C Ebisu dwarf/Dwarf2%2C Dwarf2%2C SMALL GRAIN 11;Note=CytoChrome P450 (Splicing variant);Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);Manual Curation=February 19%2C 2015;Literature_PMID=23902579;Oryzabase=423
Chr01	irgsp1_rep	five_prime_UTR	5238162	5238266	.	+	.	Parent=Os01t0197100-02
Chr01	irgsp1_rep	CDS	5238267	5238503	.	+	0	Parent=Os01t0197100-02
Chr01	irgsp1_rep	CDS	5239581	5239670	.	+	0	Parent=Os01t0197100-02
Chr01	irgsp1_rep	CDS	5239781	5239966	.	+	0	Parent=Os01t0197100-02
Chr01	irgsp1_rep	CDS	5240477	5240598	.	+	0	Parent=Os01t0197100-02
Chr01	irgsp1_rep	CDS	5243915	5244011	.	+	1	Parent=Os01t0197100-02
Chr01	irgsp1_rep	three_prime_UTR	5244012	5244520	.	+	.	Parent=Os01t0197100-02
Chr01	irgsp1_rep	mRNA	5236643	5243998	.	-	.	ID=Os01t0197150-00;Name=Os01t0197150-00;Locus_id=Os01g0197150;Note=Hypothetical protein.;Transcript_evidence=tplb0027h03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0197150-00
Chr01	irgsp1_rep	five_prime_UTR	5243912	5243998	.	-	.	Parent=Os01t0197150-00
Chr01	irgsp1_rep	five_prime_UTR	5240475	5240595	.	-	.	Parent=Os01t0197150-00
Chr01	irgsp1_rep	five_prime_UTR	5239781	5239964	.	-	.	Parent=Os01t0197150-00
Chr01	irgsp1_rep	five_prime_UTR	5239578	5239670	.	-	.	Parent=Os01t0197150-00
Chr01	irgsp1_rep	five_prime_UTR	5238252	5238497	.	-	.	Parent=Os01t0197150-00
Chr01	irgsp1_rep	five_prime_UTR	5237899	5237932	.	-	.	Parent=Os01t0197150-00
Chr01	irgsp1_rep	CDS	5237789	5237898	.	-	0	Parent=Os01t0197150-00
Chr01	irgsp1_rep	CDS	5236962	5237288	.	-	1	Parent=Os01t0197150-00
Chr01	irgsp1_rep	CDS	5236678	5236879	.	-	1	Parent=Os01t0197150-00
Chr01	irgsp1_rep	three_prime_UTR	5236643	5236677	.	-	.	Parent=Os01t0197150-00
Chr01	irgsp1_rep	mRNA	5247340	5251192	.	-	.	ID=Os01t0197200-01;Name=Os01t0197200-01;Locus_id=Os01g0197200;Oryzabase Gene Symbol Synonym(s)=OsRH20;Oryzabase Gene Name Synonym(s)=RNA helicase 20;Note=Similar to predicted protein.;Transcript_evidence=AK243305 (DDBJ%2C Best hit);ORF_evidence=A2Q465 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=RNA helicase%2C ATP-dependent%2C DEAD-box%2C conserved site (IPR000629),Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=J100055C06;Oryzabase=19135;TENOR=Os01t0197200-01;KEGG=Os01t0197200-01 (EC:3.6.4.13)
Chr01	irgsp1_rep	five_prime_UTR	5250983	5251192	.	-	.	Parent=Os01t0197200-01
Chr01	irgsp1_rep	CDS	5250927	5250982	.	-	0	Parent=Os01t0197200-01
Chr01	irgsp1_rep	CDS	5250587	5250828	.	-	1	Parent=Os01t0197200-01
Chr01	irgsp1_rep	CDS	5249589	5249768	.	-	2	Parent=Os01t0197200-01
Chr01	irgsp1_rep	CDS	5249329	5249490	.	-	2	Parent=Os01t0197200-01
Chr01	irgsp1_rep	CDS	5248964	5249118	.	-	2	Parent=Os01t0197200-01
Chr01	irgsp1_rep	CDS	5248564	5248656	.	-	0	Parent=Os01t0197200-01
Chr01	irgsp1_rep	CDS	5248382	5248467	.	-	0	Parent=Os01t0197200-01
Chr01	irgsp1_rep	CDS	5248069	5248295	.	-	1	Parent=Os01t0197200-01
Chr01	irgsp1_rep	CDS	5247759	5247994	.	-	2	Parent=Os01t0197200-01
Chr01	irgsp1_rep	CDS	5247564	5247611	.	-	0	Parent=Os01t0197200-01
Chr01	irgsp1_rep	three_prime_UTR	5247340	5247563	.	-	.	Parent=Os01t0197200-01
Chr01	irgsp1_rep	mRNA	5256634	5257053	.	+	.	ID=Os01t0197350-00;Name=Os01t0197350-00;Locus_id=Os01g0197350;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5QMM9 (UniProt);TENOR=Os01t0197350-00;KEGG=Os01t0197350-00
Chr01	irgsp1_rep	CDS	5256634	5257053	.	+	0	Parent=Os01t0197350-00
Chr01	irgsp1_rep	mRNA	5258298	5260964	.	+	.	ID=Os01t0197400-01;Name=Os01t0197400-01;Locus_id=Os01g0197400;Note=Conserved hypothetical protein.;Transcript_evidence=AK102992 (DDBJ%2C Best hit);ORF_evidence=A2WLP7 (UniProt);NIAS_FLcDNA=J033116D22;Expression=AK102992;TENOR=Os01t0197400-01;KEGG=Os01t0197400-01
Chr01	irgsp1_rep	five_prime_UTR	5258298	5258335	.	+	.	Parent=Os01t0197400-01
Chr01	irgsp1_rep	CDS	5258336	5258653	.	+	0	Parent=Os01t0197400-01
Chr01	irgsp1_rep	CDS	5260021	5260073	.	+	0	Parent=Os01t0197400-01
Chr01	irgsp1_rep	CDS	5260144	5260240	.	+	1	Parent=Os01t0197400-01
Chr01	irgsp1_rep	CDS	5260383	5260481	.	+	0	Parent=Os01t0197400-01
Chr01	irgsp1_rep	CDS	5260573	5260731	.	+	0	Parent=Os01t0197400-01
Chr01	irgsp1_rep	three_prime_UTR	5260732	5260964	.	+	.	Parent=Os01t0197400-01
Chr01	irgsp1_rep	mRNA	5261189	5263102	.	-	.	ID=Os01t0197450-00;Name=Os01t0197450-00;Locus_id=Os01g0197450;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=BT064027 (DDBJ);ORF_evidence=NP_001042300.2 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os01t0197450-00
Chr01	irgsp1_rep	CDS	5261189	5263102	.	-	0	Parent=Os01t0197450-00
Chr01	irgsp1_rep	mRNA	5264691	5266158	.	-	.	ID=Os01t0197500-00;Name=Os01t0197500-00;Locus_id=Os01g0197500;Note=Similar to predicted protein.;Transcript_evidence=CT834961 (DDBJ%2C Best hit);ORF_evidence=NP_177275.1 (RefSeq);TENOR=Os01t0197500-00;KEGG=Os01t0197500-00
Chr01	irgsp1_rep	five_prime_UTR	5266103	5266158	.	-	.	Parent=Os01t0197500-00
Chr01	irgsp1_rep	CDS	5265777	5266102	.	-	0	Parent=Os01t0197500-00
Chr01	irgsp1_rep	CDS	5264881	5265028	.	-	1	Parent=Os01t0197500-00
Chr01	irgsp1_rep	three_prime_UTR	5264691	5264880	.	-	.	Parent=Os01t0197500-00
Chr01	irgsp1_rep	mRNA	5270449	5275585	.	-	.	ID=Os01t0197700-01;Name=Os01t0197700-01;Locus_id=Os01g0197700;RAP-DB Gene Symbol Synonym(s)=Gn1a%2C OsCKX2;RAP-DB Gene Name Synonym(s)=Cytokinin oxidase/dehydrogenase 2;CGSNL Gene Symbol=GN1A;CGSNL Gene Name=GRAIN NUMBER 1A;Oryzabase Gene Symbol Synonym(s)=Gn1a%2C OsCKX2%2C CKX2%2C ckx2%2C Gn1a/OsCKX2%2C Os CKX2%2C CKX2/Gn1a;Oryzabase Gene Name Synonym(s)=Cytokinin oxidase/dehydrogenase 2%2C grain number 1a%2C cytokinin oxidase 2%2C Grain number 1a/Cytokinin oxidase 2%2C Grain number 1 a;Note=Cytokinin oxidase/dehydrogenase%2C Regulation of grain production;Transcript_evidence=AK243684,AB205193 (Koshihikari);ORF_evidence=Q4ADV8;GO=Biological Process: cytokinin metabolic process (GO:0009690),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: cytokinin dehydrogenase activity (GO:0019139),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=FAD-binding%2C type 2%2C subdomain 1 (IPR016167),FAD-binding%2C type 2 (IPR016166),FAD linked oxidase%2C N-terminal (IPR006094),CO dehydrogenase flavoprotein-like%2C FAD-binding%2C subdomain 2 (IPR016169),FAD-linked oxidase-like%2C C-terminal (IPR016164),Cytokinin dehydrogenase 1%2C FAD/cytokinin binding domain (IPR015345),Vanillyl-alcohol oxidase/Cytokinin dehydrogenase C-terminal domain (IPR016170);NIAS_FLcDNA=J100090N07;Manual Curation=August 2%2C 2017;Literature_PMID=15976269;Oryzabase=6047;TENOR=Os01t0197700-01;KEGG=Os01t0197700-01 (EC:1.5.99.12)
Chr01	irgsp1_rep	five_prime_UTR	5275523	5275585	.	-	.	Parent=Os01t0197700-01
Chr01	irgsp1_rep	CDS	5274877	5275522	.	-	0	Parent=Os01t0197700-01
Chr01	irgsp1_rep	CDS	5274319	5274785	.	-	2	Parent=Os01t0197700-01
Chr01	irgsp1_rep	CDS	5271605	5271870	.	-	0	Parent=Os01t0197700-01
Chr01	irgsp1_rep	CDS	5270835	5271153	.	-	1	Parent=Os01t0197700-01
Chr01	irgsp1_rep	three_prime_UTR	5270449	5270834	.	-	.	Parent=Os01t0197700-01
Chr01	irgsp1_rep	mRNA	5288136	5292958	.	-	.	ID=Os01t0197900-01;Name=Os01t0197900-01;Locus_id=Os01g0197900;CGSNL Gene Symbol=RDR3;CGSNL Gene Name=RNA-DEPENDENT RNA POLYMERASE 3;Oryzabase Gene Symbol Synonym(s)=OsRDR3%2C OsRDR3a;Oryzabase Gene Name Synonym(s)=RNA-dependent RNA polymerase 3%2C Probable RNA-dependent RNA polymerase 3;Note=RNA-dependent RNA polymerase%2C eukaryotic-type domain containing protein.;Transcript_evidence=AK105570 (DDBJ%2C Best hit);ORF_evidence=Q5QMN5 (UniProt);GO=Molecular Function: RNA-directed RNA polymerase activity (GO:0003968);InterPro=RNA-dependent RNA polymerase%2C eukaryotic-type (IPR007855);NIAS_FLcDNA=001-128-C12;Oryzabase=8344;Expression=AK105570;TENOR=Os01t0197900-01;KEGG=Os01t0197900-01
Chr01	irgsp1_rep	five_prime_UTR	5292957	5292958	.	-	.	Parent=Os01t0197900-01
Chr01	irgsp1_rep	CDS	5292901	5292956	.	-	0	Parent=Os01t0197900-01
Chr01	irgsp1_rep	CDS	5291963	5292191	.	-	1	Parent=Os01t0197900-01
Chr01	irgsp1_rep	CDS	5291021	5291166	.	-	0	Parent=Os01t0197900-01
Chr01	irgsp1_rep	CDS	5290537	5290696	.	-	1	Parent=Os01t0197900-01
Chr01	irgsp1_rep	CDS	5289913	5290060	.	-	0	Parent=Os01t0197900-01
Chr01	irgsp1_rep	CDS	5288935	5289107	.	-	2	Parent=Os01t0197900-01
Chr01	irgsp1_rep	CDS	5288440	5288691	.	-	0	Parent=Os01t0197900-01
Chr01	irgsp1_rep	three_prime_UTR	5288136	5288439	.	-	.	Parent=Os01t0197900-01
Chr01	irgsp1_rep	mRNA	5307415	5317280	.	-	.	ID=Os01t0198000-01;Name=Os01t0198000-01;Locus_id=Os01g0198000;CGSNL Gene Symbol=RDR4;CGSNL Gene Name=RNA-DEPENDENT RNA POLYMERASE 4;Oryzabase Gene Symbol Synonym(s)=OsRDR4%2C OsRDR3b;Oryzabase Gene Name Synonym(s)=RNA-dependent RNA polymerase 4%2C Probable RNA-dependent RNA polymerase 4;Note=RNA-dependent RNA polymerase%2C eukaryotic-type domain containing protein.;Transcript_evidence=AK064209 (DDBJ%2C Best hit);ORF_evidence=Q5QMN4 (UniProt);GO=Molecular Function: RNA-directed RNA polymerase activity (GO:0003968);InterPro=RNA-dependent RNA polymerase%2C eukaryotic-type (IPR007855);NIAS_FLcDNA=002-104-E09;Oryzabase=8345;TENOR=Os01t0198000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	5317221	5317280	.	-	0	Parent=Os01t0198000-01
Chr01	irgsp1_rep	CDS	5317064	5317135	.	-	0	Parent=Os01t0198000-01
Chr01	irgsp1_rep	CDS	5316345	5316514	.	-	0	Parent=Os01t0198000-01
Chr01	irgsp1_rep	CDS	5315054	5315202	.	-	1	Parent=Os01t0198000-01
Chr01	irgsp1_rep	CDS	5314652	5314874	.	-	2	Parent=Os01t0198000-01
Chr01	irgsp1_rep	CDS	5313482	5313707	.	-	1	Parent=Os01t0198000-01
Chr01	irgsp1_rep	CDS	5310694	5310839	.	-	0	Parent=Os01t0198000-01
Chr01	irgsp1_rep	CDS	5310197	5310356	.	-	1	Parent=Os01t0198000-01
Chr01	irgsp1_rep	CDS	5309223	5309370	.	-	0	Parent=Os01t0198000-01
Chr01	irgsp1_rep	CDS	5308107	5308279	.	-	2	Parent=Os01t0198000-01
Chr01	irgsp1_rep	CDS	5307754	5308008	.	-	0	Parent=Os01t0198000-01
Chr01	irgsp1_rep	three_prime_UTR	5307415	5307753	.	-	.	Parent=Os01t0198000-01
Chr01	irgsp1_rep	mRNA	5320625	5324478	.	-	.	ID=Os01t0198100-01;Name=Os01t0198100-01;Locus_id=Os01g0198100;Note=RNA-dependent RNA polymerase%2C eukaryotic-type domain containing protein.;Transcript_evidence=AK119908 (DDBJ%2C Best hit);ORF_evidence=Q5QMN4 (UniProt);GO=Molecular Function: RNA-directed RNA polymerase activity (GO:0003968);InterPro=RNA-dependent RNA polymerase%2C eukaryotic-type (IPR007855);NIAS_FLcDNA=002-182-F11;Expression=AK119908;TENOR=Os01t0198100-01;KEGG=Os01t0198100-01
Chr01	irgsp1_rep	five_prime_UTR	5324357	5324478	.	-	.	Parent=Os01t0198100-01
Chr01	irgsp1_rep	CDS	5324053	5324356	.	-	0	Parent=Os01t0198100-01
Chr01	irgsp1_rep	CDS	5323090	5323367	.	-	2	Parent=Os01t0198100-01
Chr01	irgsp1_rep	CDS	5322707	5323020	.	-	0	Parent=Os01t0198100-01
Chr01	irgsp1_rep	CDS	5322391	5322562	.	-	1	Parent=Os01t0198100-01
Chr01	irgsp1_rep	CDS	5321644	5321727	.	-	0	Parent=Os01t0198100-01
Chr01	irgsp1_rep	CDS	5321123	5321306	.	-	0	Parent=Os01t0198100-01
Chr01	irgsp1_rep	CDS	5320625	5320656	.	-	2	Parent=Os01t0198100-01
Chr01	irgsp1_rep	mRNA	5329075	5335518	.	-	.	ID=Os01t0198200-01;Name=Os01t0198200-01;Locus_id=Os01g0198200;Note=Similar to Casein kinase-like protein.;Transcript_evidence=AK103403 (DDBJ%2C Best hit);ORF_evidence=D8V7I8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033128C13;Expression=AK103403;TENOR=Os01t0198200-01;KEGG=Os01t0198200-01
Chr01	irgsp1_rep	five_prime_UTR	5335315	5335518	.	-	.	Parent=Os01t0198200-01
Chr01	irgsp1_rep	CDS	5335135	5335314	.	-	0	Parent=Os01t0198200-01
Chr01	irgsp1_rep	CDS	5333820	5333954	.	-	0	Parent=Os01t0198200-01
Chr01	irgsp1_rep	CDS	5333662	5333735	.	-	0	Parent=Os01t0198200-01
Chr01	irgsp1_rep	CDS	5333485	5333554	.	-	1	Parent=Os01t0198200-01
Chr01	irgsp1_rep	CDS	5333307	5333362	.	-	0	Parent=Os01t0198200-01
Chr01	irgsp1_rep	CDS	5333150	5333221	.	-	1	Parent=Os01t0198200-01
Chr01	irgsp1_rep	CDS	5332968	5333062	.	-	1	Parent=Os01t0198200-01
Chr01	irgsp1_rep	CDS	5332804	5332870	.	-	2	Parent=Os01t0198200-01
Chr01	irgsp1_rep	CDS	5332586	5332715	.	-	1	Parent=Os01t0198200-01
Chr01	irgsp1_rep	CDS	5332290	5332508	.	-	0	Parent=Os01t0198200-01
Chr01	irgsp1_rep	CDS	5331603	5331742	.	-	0	Parent=Os01t0198200-01
Chr01	irgsp1_rep	CDS	5331359	5331533	.	-	1	Parent=Os01t0198200-01
Chr01	irgsp1_rep	CDS	5330677	5330767	.	-	0	Parent=Os01t0198200-01
Chr01	irgsp1_rep	CDS	5329611	5329768	.	-	2	Parent=Os01t0198200-01
Chr01	irgsp1_rep	CDS	5329300	5329488	.	-	0	Parent=Os01t0198200-01
Chr01	irgsp1_rep	CDS	5329169	5329228	.	-	0	Parent=Os01t0198200-01
Chr01	irgsp1_rep	three_prime_UTR	5329075	5329168	.	-	.	Parent=Os01t0198200-01
Chr01	irgsp1_rep	mRNA	5329096	5333540	.	-	.	ID=Os01t0198200-02;Name=Os01t0198200-02;Locus_id=Os01g0198200;Note=Similar to predicted protein.;Transcript_evidence=AK060271 (DDBJ%2C Best hit);ORF_evidence=D8V7I8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-005-E10;Expression=AK060271;TENOR=Os01t0198200-02;KEGG=Os01t0198200-02 (EC:2.7.11.1)
Chr01	irgsp1_rep	five_prime_UTR	5333539	5333540	.	-	.	Parent=Os01t0198200-02
Chr01	irgsp1_rep	CDS	5333485	5333538	.	-	0	Parent=Os01t0198200-02
Chr01	irgsp1_rep	CDS	5333307	5333362	.	-	0	Parent=Os01t0198200-02
Chr01	irgsp1_rep	CDS	5333150	5333221	.	-	1	Parent=Os01t0198200-02
Chr01	irgsp1_rep	CDS	5332968	5333062	.	-	1	Parent=Os01t0198200-02
Chr01	irgsp1_rep	CDS	5332804	5332870	.	-	2	Parent=Os01t0198200-02
Chr01	irgsp1_rep	CDS	5332586	5332715	.	-	1	Parent=Os01t0198200-02
Chr01	irgsp1_rep	CDS	5332290	5332508	.	-	0	Parent=Os01t0198200-02
Chr01	irgsp1_rep	CDS	5331603	5331742	.	-	0	Parent=Os01t0198200-02
Chr01	irgsp1_rep	CDS	5331359	5331533	.	-	1	Parent=Os01t0198200-02
Chr01	irgsp1_rep	CDS	5330677	5330767	.	-	0	Parent=Os01t0198200-02
Chr01	irgsp1_rep	CDS	5329611	5329768	.	-	2	Parent=Os01t0198200-02
Chr01	irgsp1_rep	CDS	5329300	5329488	.	-	0	Parent=Os01t0198200-02
Chr01	irgsp1_rep	CDS	5329169	5329228	.	-	0	Parent=Os01t0198200-02
Chr01	irgsp1_rep	three_prime_UTR	5329096	5329168	.	-	.	Parent=Os01t0198200-02
Chr01	irgsp1_rep	mRNA	5329063	5332585	.	-	.	ID=Os01t0198200-03;Name=Os01t0198200-03;Locus_id=Os01g0198200;Note=Similar to predicted protein.;Transcript_evidence=AK099617 (DDBJ%2C Best hit);ORF_evidence=D8V7I8 (UniProt);NIAS_FLcDNA=J013051B07;Expression=AK099617;TENOR=Os01t0198200-03;KEGG=Os01t0198200-03
Chr01	irgsp1_rep	five_prime_UTR	5332509	5332585	.	-	.	Parent=Os01t0198200-03
Chr01	irgsp1_rep	CDS	5332290	5332508	.	-	0	Parent=Os01t0198200-03
Chr01	irgsp1_rep	CDS	5331603	5331742	.	-	0	Parent=Os01t0198200-03
Chr01	irgsp1_rep	CDS	5331359	5331533	.	-	1	Parent=Os01t0198200-03
Chr01	irgsp1_rep	CDS	5330677	5330767	.	-	0	Parent=Os01t0198200-03
Chr01	irgsp1_rep	CDS	5329611	5329768	.	-	2	Parent=Os01t0198200-03
Chr01	irgsp1_rep	CDS	5329300	5329488	.	-	0	Parent=Os01t0198200-03
Chr01	irgsp1_rep	CDS	5329169	5329228	.	-	0	Parent=Os01t0198200-03
Chr01	irgsp1_rep	three_prime_UTR	5329063	5329168	.	-	.	Parent=Os01t0198200-03
Chr01	irgsp1_rep	mRNA	5330676	5333955	.	+	.	ID=Os01t0198250-00;Name=Os01t0198250-00;Locus_id=Os01g0198250;Note=Hypothetical gene.;Transcript_evidence=BT084747 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0198250-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	5330676	5330791	.	+	.	Parent=Os01t0198250-00
Chr01	irgsp1_rep	five_prime_UTR	5331381	5331523	.	+	.	Parent=Os01t0198250-00
Chr01	irgsp1_rep	five_prime_UTR	5331588	5331738	.	+	.	Parent=Os01t0198250-00
Chr01	irgsp1_rep	five_prime_UTR	5332286	5332507	.	+	.	Parent=Os01t0198250-00
Chr01	irgsp1_rep	five_prime_UTR	5332585	5332717	.	+	.	Parent=Os01t0198250-00
Chr01	irgsp1_rep	five_prime_UTR	5332810	5332835	.	+	.	Parent=Os01t0198250-00
Chr01	irgsp1_rep	CDS	5332836	5332866	.	+	0	Parent=Os01t0198250-00
Chr01	irgsp1_rep	CDS	5332962	5333058	.	+	2	Parent=Os01t0198250-00
Chr01	irgsp1_rep	CDS	5333146	5333223	.	+	1	Parent=Os01t0198250-00
Chr01	irgsp1_rep	CDS	5333310	5333343	.	+	1	Parent=Os01t0198250-00
Chr01	irgsp1_rep	CDS	5333470	5333551	.	+	0	Parent=Os01t0198250-00
Chr01	irgsp1_rep	CDS	5333652	5333716	.	+	2	Parent=Os01t0198250-00
Chr01	irgsp1_rep	CDS	5333807	5333818	.	+	0	Parent=Os01t0198250-00
Chr01	irgsp1_rep	three_prime_UTR	5333819	5333955	.	+	.	Parent=Os01t0198250-00
Chr01	irgsp1_rep	mRNA	5352505	5353607	.	-	.	ID=Os01t0198500-01;Name=Os01t0198500-01;Locus_id=Os01g0198500;Note=Conserved hypothetical protein.;Transcript_evidence=AK108464 (DDBJ%2C Best hit);ORF_evidence=A2WLQ4 (UniProt);NIAS_FLcDNA=002-143-D11;Expression=AK108464;TENOR=Os01t0198500-01;KEGG=Os01t0198500-01
Chr01	irgsp1_rep	five_prime_UTR	5353414	5353607	.	-	.	Parent=Os01t0198500-01
Chr01	irgsp1_rep	CDS	5352700	5353413	.	-	0	Parent=Os01t0198500-01
Chr01	irgsp1_rep	three_prime_UTR	5352505	5352699	.	-	.	Parent=Os01t0198500-01
Chr01	irgsp1_rep	mRNA	5361440	5362677	.	-	.	ID=Os01t0198702-01;Name=Os01t0198702-01;Locus_id=Os01g0198702;Note=Conserved hypothetical protein.;Transcript_evidence=AK242704 (DDBJ%2C Best hit);ORF_evidence=Q6ZF06 (UniProt);NIAS_FLcDNA=J090039M02;TENOR=Os01t0198702-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	5361749	5362677	.	-	.	Parent=Os01t0198702-01
Chr01	irgsp1_rep	CDS	5361560	5361748	.	-	0	Parent=Os01t0198702-01
Chr01	irgsp1_rep	three_prime_UTR	5361440	5361559	.	-	.	Parent=Os01t0198702-01
Chr01	irgsp1_rep	mRNA	5373630	5374681	.	+	.	ID=Os01t0198900-01;Name=Os01t0198900-01;Locus_id=Os01g0198900;Note=Polyketide cyclase/dehydrase domain containing protein.;Transcript_evidence=AK060553 (DDBJ%2C Best hit);ORF_evidence=A2WLQ6 (UniProt);InterPro=Polyketide cyclase/dehydrase (IPR019587),START-like domain (IPR023393);NIAS_FLcDNA=001-022-B09;Expression=AK060553;TENOR=Os01t0198900-01;KEGG=Os01t0198900-01
Chr01	irgsp1_rep	five_prime_UTR	5373630	5373778	.	+	.	Parent=Os01t0198900-01
Chr01	irgsp1_rep	CDS	5373779	5374429	.	+	0	Parent=Os01t0198900-01
Chr01	irgsp1_rep	three_prime_UTR	5374430	5374681	.	+	.	Parent=Os01t0198900-01
Chr01	irgsp1_rep	mRNA	5373712	5374663	.	+	.	ID=Os01t0198900-02;Name=Os01t0198900-02;Locus_id=Os01g0198900;Note=Polyketide cyclase/dehydrase domain containing protein.;Transcript_evidence=AK099171 (DDBJ%2C Best hit),AK069974 (DDBJ%2C Best hit);ORF_evidence=A2WLQ6 (UniProt);InterPro=Polyketide cyclase/dehydrase (IPR019587),START-like domain (IPR023393);NIAS_FLcDNA=J023088J12,J023036M01;Expression=AK099171;TENOR=Os01t0198900-02;KEGG=Os01t0198900-02
Chr01	irgsp1_rep	five_prime_UTR	5373712	5373778	.	+	.	Parent=Os01t0198900-02
Chr01	irgsp1_rep	CDS	5373779	5374429	.	+	0	Parent=Os01t0198900-02
Chr01	irgsp1_rep	three_prime_UTR	5374430	5374663	.	+	.	Parent=Os01t0198900-02
Chr01	irgsp1_rep	mRNA	5384196	5385088	.	+	.	ID=Os01t0199300-00;Name=Os01t0199300-00;Locus_id=Os01g0199300;Note=Similar to laChrymatory factor synthase.;Transcript_evidence=CT834808 (DDBJ%2C Best hit);ORF_evidence=NP_001151021.1 (RefSeq);InterPro=Polyketide cyclase/dehydrase (IPR019587),START-like domain (IPR023393);TENOR=Os01t0199300-00;KEGG=Os01t0199300-00
Chr01	irgsp1_rep	five_prime_UTR	5384196	5384238	.	+	.	Parent=Os01t0199300-00
Chr01	irgsp1_rep	CDS	5384239	5384817	.	+	0	Parent=Os01t0199300-00
Chr01	irgsp1_rep	three_prime_UTR	5384818	5385088	.	+	.	Parent=Os01t0199300-00
Chr01	irgsp1_rep	mRNA	5389837	5394412	.	-	.	ID=Os01t0199400-01;Name=Os01t0199400-01;Locus_id=Os01g0199400;Note=Alpha/beta hydrolase family protein.;Transcript_evidence=AK068509 (DDBJ%2C Best hit);ORF_evidence=NP_196726.1 (RefSeq);InterPro=Alpha/beta hydrolase fold-1 (IPR000073),Alpha/beta hydrolase%2C N-terminal (IPR022742);NIAS_FLcDNA=J013154B19;Expression=AK068509;TENOR=Os01t0199400-01;KEGG=Os01t0199400-01
Chr01	irgsp1_rep	five_prime_UTR	5394351	5394412	.	-	.	Parent=Os01t0199400-01
Chr01	irgsp1_rep	CDS	5393938	5394350	.	-	0	Parent=Os01t0199400-01
Chr01	irgsp1_rep	CDS	5392297	5392335	.	-	1	Parent=Os01t0199400-01
Chr01	irgsp1_rep	CDS	5392106	5392176	.	-	1	Parent=Os01t0199400-01
Chr01	irgsp1_rep	CDS	5391472	5391536	.	-	2	Parent=Os01t0199400-01
Chr01	irgsp1_rep	CDS	5391301	5391390	.	-	0	Parent=Os01t0199400-01
Chr01	irgsp1_rep	CDS	5390973	5391065	.	-	0	Parent=Os01t0199400-01
Chr01	irgsp1_rep	CDS	5390071	5390487	.	-	0	Parent=Os01t0199400-01
Chr01	irgsp1_rep	three_prime_UTR	5389837	5390070	.	-	.	Parent=Os01t0199400-01
Chr01	irgsp1_rep	mRNA	5389841	5393868	.	-	.	ID=Os01t0199400-02;Name=Os01t0199400-02;Locus_id=Os01g0199400;Note=Similar to predicted protein.;Transcript_evidence=AK070748 (DDBJ%2C Best hit);ORF_evidence=NP_196726.1 (RefSeq);InterPro=Alpha/beta hydrolase fold-1 (IPR000073);NIAS_FLcDNA=J023068O10;Expression=AK070748;TENOR=Os01t0199400-02;KEGG=Os01t0199400-02
Chr01	irgsp1_rep	five_prime_UTR	5392437	5393868	.	-	.	Parent=Os01t0199400-02
Chr01	irgsp1_rep	CDS	5392297	5392436	.	-	0	Parent=Os01t0199400-02
Chr01	irgsp1_rep	CDS	5392106	5392176	.	-	1	Parent=Os01t0199400-02
Chr01	irgsp1_rep	CDS	5391472	5391536	.	-	2	Parent=Os01t0199400-02
Chr01	irgsp1_rep	CDS	5391301	5391390	.	-	0	Parent=Os01t0199400-02
Chr01	irgsp1_rep	CDS	5390973	5391065	.	-	0	Parent=Os01t0199400-02
Chr01	irgsp1_rep	CDS	5390071	5390487	.	-	0	Parent=Os01t0199400-02
Chr01	irgsp1_rep	three_prime_UTR	5389841	5390070	.	-	.	Parent=Os01t0199400-02
Chr01	irgsp1_rep	mRNA	5390090	5391282	.	+	.	ID=Os01t0199550-00;Name=Os01t0199550-00;Locus_id=Os01g0199550;Note=Non-protein coding transcript.;Transcript_evidence=BT067814 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0199550-00
Chr01	irgsp1_rep	exon	5390090	5390456	.	+	.	Parent=Os01t0199550-00
Chr01	irgsp1_rep	exon	5390950	5391282	.	+	.	Parent=Os01t0199550-00
Chr01	irgsp1_rep	mRNA	5398321	5402018	.	-	.	ID=Os01t0199700-00;Name=Os01t0199700-00;Locus_id=Os01g0199700;Note=Protein of unknown function DUF1677%2C plant domain containing protein.;Transcript_evidence=AK369362 (DDBJ);ORF_evidence=NP_001042311.1 (RefSeq);InterPro=Protein of unknown function DUF1677%2C plant (IPR012876);TENOR=Os01t0199700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	5401530	5402018	.	-	0	Parent=Os01t0199700-00
Chr01	irgsp1_rep	CDS	5398321	5398539	.	-	0	Parent=Os01t0199700-00
Chr01	irgsp1_rep	mRNA	5406050	5412737	.	+	.	ID=Os01t0199900-01;Name=Os01t0199900-01;Locus_id=Os01g0199900;CGSNL Gene Symbol=AIRC;CGSNL Gene Name=AIR CARBOXYLASE;Oryzabase Gene Symbol Synonym(s)=OsAIRC;Oryzabase Gene Name Synonym(s)=AIR carboxylase;Note=Similar to Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) (AIR carboxylase) (AIRC).;Transcript_evidence=AK068172 (DDBJ%2C Best hit);ORF_evidence=Q6T7F1 (UniProt);GO=Biological Process: 'de novo' IMP biosynthetic process (GO:0006189),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphoribosylaminoimidazole carboxylase activity (GO:0004638),Molecular Function: ATP binding (GO:0005524),Molecular Function: ligase activity (GO:0016874),Molecular Function: metal ion binding (GO:0046872);InterPro=Phosphoribosylaminoimidazole carboxylase%2C core (IPR000031),ATP-grasp fold%2C ATP-dependent carboxylate-amine ligase-type (IPR003135),Phosphoribosylaminoimidazole carboxylase%2C ATPase subunit (IPR005875),Rudiment single hybrid motif (IPR011054),ATP-grasp fold (IPR011761),ATP-grasp fold%2C subdomain 1 (IPR013815),ATP-grasp fold%2C subdomain 2 (IPR013816),Pre-ATP-grasp fold (IPR013817),PreATP-grasp-like fold (IPR016185),Phosphoribosylaminoimidazole carboxylase (IPR016301);NIAS_FLcDNA=J013129D15;Oryzabase=22927;Expression=AK068172;TENOR=Os01t0199900-01;KEGG=Os01t0199900-01 (EC:4.1.1.21)
Chr01	irgsp1_rep	five_prime_UTR	5406050	5406177	.	+	.	Parent=Os01t0199900-01
Chr01	irgsp1_rep	CDS	5406178	5406356	.	+	0	Parent=Os01t0199900-01
Chr01	irgsp1_rep	CDS	5406478	5406693	.	+	1	Parent=Os01t0199900-01
Chr01	irgsp1_rep	CDS	5406808	5406919	.	+	1	Parent=Os01t0199900-01
Chr01	irgsp1_rep	CDS	5407335	5407397	.	+	0	Parent=Os01t0199900-01
Chr01	irgsp1_rep	CDS	5407468	5407606	.	+	0	Parent=Os01t0199900-01
Chr01	irgsp1_rep	CDS	5407822	5407877	.	+	2	Parent=Os01t0199900-01
Chr01	irgsp1_rep	CDS	5409088	5409161	.	+	0	Parent=Os01t0199900-01
Chr01	irgsp1_rep	CDS	5409270	5409417	.	+	1	Parent=Os01t0199900-01
Chr01	irgsp1_rep	CDS	5409505	5409678	.	+	0	Parent=Os01t0199900-01
Chr01	irgsp1_rep	CDS	5409809	5409896	.	+	0	Parent=Os01t0199900-01
Chr01	irgsp1_rep	CDS	5409996	5410109	.	+	2	Parent=Os01t0199900-01
Chr01	irgsp1_rep	CDS	5410722	5410825	.	+	2	Parent=Os01t0199900-01
Chr01	irgsp1_rep	CDS	5410927	5411041	.	+	0	Parent=Os01t0199900-01
Chr01	irgsp1_rep	CDS	5411437	5411534	.	+	2	Parent=Os01t0199900-01
Chr01	irgsp1_rep	CDS	5411672	5411778	.	+	0	Parent=Os01t0199900-01
Chr01	irgsp1_rep	CDS	5412276	5412384	.	+	1	Parent=Os01t0199900-01
Chr01	irgsp1_rep	three_prime_UTR	5412385	5412450	.	+	.	Parent=Os01t0199900-01
Chr01	irgsp1_rep	three_prime_UTR	5412554	5412737	.	+	.	Parent=Os01t0199900-01
Chr01	irgsp1_rep	mRNA	5410930	5412355	.	-	.	ID=Os01t0199950-00;Name=Os01t0199950-00;Locus_id=Os01g0199950;Note=Hypothetical gene.;Transcript_evidence=AF457972 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0199950-00;KEGG=Os01t0199950-00
Chr01	irgsp1_rep	five_prime_UTR	5412295	5412355	.	-	.	Parent=Os01t0199950-00
Chr01	irgsp1_rep	CDS	5412289	5412294	.	-	0	Parent=Os01t0199950-00
Chr01	irgsp1_rep	CDS	5411661	5411787	.	-	0	Parent=Os01t0199950-00
Chr01	irgsp1_rep	CDS	5411426	5411523	.	-	2	Parent=Os01t0199950-00
Chr01	irgsp1_rep	CDS	5411006	5411032	.	-	0	Parent=Os01t0199950-00
Chr01	irgsp1_rep	three_prime_UTR	5410930	5411005	.	-	.	Parent=Os01t0199950-00
Chr01	irgsp1_rep	mRNA	5413595	5416778	.	-	.	ID=Os01t0200000-01;Name=Os01t0200000-01;Locus_id=Os01g0200000;CGSNL Gene Symbol=ATG3A;CGSNL Gene Name=AUTOPHAGY ASSOCIATED GENE 3A;Oryzabase Gene Symbol Synonym(s)=OsATG3a%2C Atg3a;Oryzabase Gene Name Synonym(s)=autophagy 3a%2C AUTOPHAGY RELATED3a;Note=Similar to autophagocytosis protein AUT1-like [Oryza sativa (japonica cultivar-group)].;Transcript_evidence=AK067737 (DDBJ%2C Best hit);ORF_evidence=B8A6J7 (UniProt);InterPro=Autophagy-related protein 3%2C N-terminal (IPR007134),Autophagy-related protein 3 (IPR007135),Autophagy-related protein 3%2C C-terminal (IPR019461);NIAS_FLcDNA=J013120F11;Oryzabase=9635;Expression=AK067737;TENOR=Os01t0200000-01;KEGG=Os01t0200000-01
Chr01	irgsp1_rep	five_prime_UTR	5416622	5416778	.	-	.	Parent=Os01t0200000-01
Chr01	irgsp1_rep	CDS	5416461	5416621	.	-	0	Parent=Os01t0200000-01
Chr01	irgsp1_rep	CDS	5416302	5416372	.	-	1	Parent=Os01t0200000-01
Chr01	irgsp1_rep	CDS	5415941	5416057	.	-	2	Parent=Os01t0200000-01
Chr01	irgsp1_rep	CDS	5415682	5415851	.	-	2	Parent=Os01t0200000-01
Chr01	irgsp1_rep	CDS	5415496	5415581	.	-	0	Parent=Os01t0200000-01
Chr01	irgsp1_rep	CDS	5414986	5415037	.	-	1	Parent=Os01t0200000-01
Chr01	irgsp1_rep	CDS	5414840	5414905	.	-	0	Parent=Os01t0200000-01
Chr01	irgsp1_rep	CDS	5414226	5414356	.	-	0	Parent=Os01t0200000-01
Chr01	irgsp1_rep	CDS	5414026	5414122	.	-	1	Parent=Os01t0200000-01
Chr01	irgsp1_rep	three_prime_UTR	5414012	5414025	.	-	.	Parent=Os01t0200000-01
Chr01	irgsp1_rep	three_prime_UTR	5413595	5413847	.	-	.	Parent=Os01t0200000-01
Chr01	irgsp1_rep	mRNA	5414253	5416534	.	+	.	ID=Os01t0200150-00;Name=Os01t0200150-00;Locus_id=Os01g0200150;Note=Hypothetical gene.;Transcript_evidence=EU940960 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0200150-00;KEGG=Os01t0200150-00
Chr01	irgsp1_rep	five_prime_UTR	5414253	5414351	.	+	.	Parent=Os01t0200150-00
Chr01	irgsp1_rep	five_prime_UTR	5414837	5414905	.	+	.	Parent=Os01t0200150-00
Chr01	irgsp1_rep	five_prime_UTR	5414986	5415030	.	+	.	Parent=Os01t0200150-00
Chr01	irgsp1_rep	five_prime_UTR	5415489	5415568	.	+	.	Parent=Os01t0200150-00
Chr01	irgsp1_rep	five_prime_UTR	5415672	5415715	.	+	.	Parent=Os01t0200150-00
Chr01	irgsp1_rep	CDS	5415716	5415851	.	+	0	Parent=Os01t0200150-00
Chr01	irgsp1_rep	CDS	5415941	5416042	.	+	2	Parent=Os01t0200150-00
Chr01	irgsp1_rep	CDS	5416283	5416371	.	+	2	Parent=Os01t0200150-00
Chr01	irgsp1_rep	CDS	5416460	5416534	.	+	0	Parent=Os01t0200150-00
Chr01	irgsp1_rep	mRNA	5424059	5424581	.	+	.	ID=Os01t0200200-00;Name=Os01t0200200-00;Locus_id=Os01g0200200;Note=Protein of unknown function DUF1677%2C plant domain containing protein.;Transcript_evidence=tplb0005h18 (Wheat FLcDNA);ORF_evidence=NP_001172221.1 (RefSeq);InterPro=Protein of unknown function DUF1677%2C plant (IPR012876);TENOR=Os01t0200200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	5424059	5424571	.	+	0	Parent=Os01t0200200-00
Chr01	irgsp1_rep	three_prime_UTR	5424572	5424581	.	+	.	Parent=Os01t0200200-00
Chr01	irgsp1_rep	mRNA	5426582	5429390	.	-	.	ID=Os01t0200300-01;Name=Os01t0200300-01;Locus_id=Os01g0200300;CGSNL Gene Symbol=HOX29;CGSNL Gene Name=HOMEOBOX GENE 29;Oryzabase Gene Symbol Synonym(s)=Oshox29%2C OsHox29%2C OSHB5%2C HB5;Oryzabase Gene Name Synonym(s)=rice homeobox gene 29%2C Homeobox-leucine zipper protein HOX29%2C Homeodomain transcription factor HOX29%2C HD-ZIP protein HOX29%2C HOMEODOMAIN CONTAINING PROTEIN 5;Note=Similar to Homeobox-leucine zipper protein HOX29.;Transcript_evidence=AK112091 (DDBJ%2C Best hit);ORF_evidence=Q5QMZ9 (UniProt);InterPro=MEKHLA (IPR013978);NIAS_FLcDNA=002-107-A01;Oryzabase=8466;TENOR=Os01t0200300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	5429389	5429390	.	-	.	Parent=Os01t0200300-01
Chr01	irgsp1_rep	CDS	5429266	5429388	.	-	0	Parent=Os01t0200300-01
Chr01	irgsp1_rep	CDS	5428989	5429174	.	-	0	Parent=Os01t0200300-01
Chr01	irgsp1_rep	CDS	5428812	5428889	.	-	0	Parent=Os01t0200300-01
Chr01	irgsp1_rep	CDS	5428578	5428712	.	-	0	Parent=Os01t0200300-01
Chr01	irgsp1_rep	CDS	5428120	5428481	.	-	0	Parent=Os01t0200300-01
Chr01	irgsp1_rep	CDS	5427853	5427964	.	-	1	Parent=Os01t0200300-01
Chr01	irgsp1_rep	CDS	5427302	5427451	.	-	0	Parent=Os01t0200300-01
Chr01	irgsp1_rep	CDS	5426713	5426862	.	-	0	Parent=Os01t0200300-01
Chr01	irgsp1_rep	three_prime_UTR	5426582	5426712	.	-	.	Parent=Os01t0200300-01
Chr01	irgsp1_rep	mRNA	5426719	5431404	.	+	.	ID=Os01t0200350-00;Name=Os01t0200350-00;Locus_id=Os01g0200350;Note=Hypothetical protein.;Transcript_evidence=tplb0037d04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0200350-00
Chr01	irgsp1_rep	five_prime_UTR	5426719	5426858	.	+	.	Parent=Os01t0200350-00
Chr01	irgsp1_rep	five_prime_UTR	5427298	5427374	.	+	.	Parent=Os01t0200350-00
Chr01	irgsp1_rep	CDS	5427375	5427502	.	+	0	Parent=Os01t0200350-00
Chr01	irgsp1_rep	CDS	5428063	5428261	.	+	1	Parent=Os01t0200350-00
Chr01	irgsp1_rep	three_prime_UTR	5428262	5428440	.	+	.	Parent=Os01t0200350-00
Chr01	irgsp1_rep	three_prime_UTR	5428581	5428706	.	+	.	Parent=Os01t0200350-00
Chr01	irgsp1_rep	three_prime_UTR	5428904	5429155	.	+	.	Parent=Os01t0200350-00
Chr01	irgsp1_rep	three_prime_UTR	5429248	5429532	.	+	.	Parent=Os01t0200350-00
Chr01	irgsp1_rep	three_prime_UTR	5429713	5429805	.	+	.	Parent=Os01t0200350-00
Chr01	irgsp1_rep	three_prime_UTR	5429884	5430089	.	+	.	Parent=Os01t0200350-00
Chr01	irgsp1_rep	three_prime_UTR	5430287	5430424	.	+	.	Parent=Os01t0200350-00
Chr01	irgsp1_rep	three_prime_UTR	5430536	5430643	.	+	.	Parent=Os01t0200350-00
Chr01	irgsp1_rep	three_prime_UTR	5430724	5430790	.	+	.	Parent=Os01t0200350-00
Chr01	irgsp1_rep	three_prime_UTR	5430866	5430981	.	+	.	Parent=Os01t0200350-00
Chr01	irgsp1_rep	three_prime_UTR	5431037	5431404	.	+	.	Parent=Os01t0200350-00
Chr01	irgsp1_rep	mRNA	5435443	5442646	.	-	.	ID=Os01t0200400-01;Name=Os01t0200400-01;Locus_id=Os01g0200400;Note=Thioredoxin domain 2 containing protein.;Transcript_evidence=AK070272 (DDBJ%2C Best hit),AK104558 (DDBJ%2C Best hit);ORF_evidence=B6T5H1 (UniProt);InterPro=Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=J023043M23,006-305-H08;Expression=AK070272;TENOR=Os01t0200400-01;KEGG=Os01t0200400-01
Chr01	irgsp1_rep	five_prime_UTR	5442600	5442646	.	-	.	Parent=Os01t0200400-01
Chr01	irgsp1_rep	CDS	5442417	5442599	.	-	0	Parent=Os01t0200400-01
Chr01	irgsp1_rep	CDS	5442240	5442284	.	-	0	Parent=Os01t0200400-01
Chr01	irgsp1_rep	CDS	5440783	5440839	.	-	0	Parent=Os01t0200400-01
Chr01	irgsp1_rep	CDS	5440513	5440582	.	-	0	Parent=Os01t0200400-01
Chr01	irgsp1_rep	CDS	5439275	5439316	.	-	2	Parent=Os01t0200400-01
Chr01	irgsp1_rep	CDS	5438160	5438233	.	-	2	Parent=Os01t0200400-01
Chr01	irgsp1_rep	CDS	5437645	5437715	.	-	0	Parent=Os01t0200400-01
Chr01	irgsp1_rep	CDS	5437144	5437229	.	-	1	Parent=Os01t0200400-01
Chr01	irgsp1_rep	CDS	5436898	5436998	.	-	2	Parent=Os01t0200400-01
Chr01	irgsp1_rep	CDS	5435859	5435916	.	-	0	Parent=Os01t0200400-01
Chr01	irgsp1_rep	CDS	5435773	5435774	.	-	2	Parent=Os01t0200400-01
Chr01	irgsp1_rep	three_prime_UTR	5435443	5435772	.	-	.	Parent=Os01t0200400-01
Chr01	irgsp1_rep	mRNA	5442866	5446246	.	+	.	ID=Os01t0200500-01;Name=Os01t0200500-01;Locus_id=Os01g0200500;Note=MPPN family protein.;Transcript_evidence=AK068290 (DDBJ%2C Best hit);ORF_evidence=B6TI12 (UniProt);InterPro=MPPN (IPR007846),Nucleoporin%2C NUP53 (IPR017389);NIAS_FLcDNA=J013151I06;Expression=AK068290;TENOR=Os01t0200500-01;KEGG=Os01t0200500-01
Chr01	irgsp1_rep	five_prime_UTR	5442866	5442940	.	+	.	Parent=Os01t0200500-01
Chr01	irgsp1_rep	CDS	5442941	5443482	.	+	0	Parent=Os01t0200500-01
Chr01	irgsp1_rep	CDS	5444125	5444236	.	+	1	Parent=Os01t0200500-01
Chr01	irgsp1_rep	CDS	5445523	5445852	.	+	0	Parent=Os01t0200500-01
Chr01	irgsp1_rep	three_prime_UTR	5445853	5446246	.	+	.	Parent=Os01t0200500-01
Chr01	irgsp1_rep	mRNA	5454772	5455667	.	-	.	ID=Os01t0200600-01;Name=Os01t0200600-01;Locus_id=Os01g0200600;CGSNL Gene Symbol=ERF39;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 39;Oryzabase Gene Symbol Synonym(s)=OsERF#039%2C OsERF039%2C OsERF39%2C AP2/EREBP#002%2C AP2/EREBP2;Oryzabase Gene Name Synonym(s)=ethylene response factor 39%2C APETALA2/ethylene-responsive element binding protein 2;Note=Similar to Avr9/Cf-9 rapidly elicited protein 111A.;Transcript_evidence=AK108873 (DDBJ%2C Best hit);ORF_evidence=Q27W81 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=002-152-C11;Oryzabase=10557;Expression=AK108873;TENOR=Os01t0200600-01;KEGG=Os01t0200600-01
Chr01	irgsp1_rep	five_prime_UTR	5455620	5455667	.	-	.	Parent=Os01t0200600-01
Chr01	irgsp1_rep	CDS	5454933	5455619	.	-	0	Parent=Os01t0200600-01
Chr01	irgsp1_rep	three_prime_UTR	5454772	5454932	.	-	.	Parent=Os01t0200600-01
Chr01	irgsp1_rep	mRNA	5478545	5479749	.	+	.	ID=Os01t0200700-01;Name=Os01t0200700-01;Locus_id=Os01g0200700;RAP-DB Gene Symbol Synonym(s)=OsMT-3a;RAP-DB Gene Name Synonym(s)=MT-like type 3%2C metallothionein-like type 3;CGSNL Gene Symbol=MTI3A;CGSNL Gene Name=METALLOTHIONEIN I-3A;Oryzabase Gene Symbol Synonym(s)=OsMT3a%2C MT3a%2C OsMT-I-3a%2C MT-I-3a%2C MTe%2C met2%2C OsMT3%2C MT3%2C OsMTI-3a%2C MTI-3a;Oryzabase Gene Name Synonym(s)=Metallothionein 3a%2C type 3 metallothionein a%2C metallothionein 2;Note=Metallothionein-like protein%2C Tolerance to salinity and heavy metal stresses%2C Abiotic stress response;Transcript_evidence=AK058313,AK120350;ORF_evidence=A1YTM8;NIAS_FLcDNA=001-014-A03,J013065G09;Manual Curation=April 9%2C 2020;Literature_PMID=32253631,DOI:10.1016/j.envexpbot.2017.12.002;Oryzabase=11123;TENOR=Os01t0200700-01
Chr01	irgsp1_rep	five_prime_UTR	5478545	5478620	.	+	.	Parent=Os01t0200700-01
Chr01	irgsp1_rep	CDS	5478621	5478670	.	+	0	Parent=Os01t0200700-01
Chr01	irgsp1_rep	CDS	5478810	5478857	.	+	1	Parent=Os01t0200700-01
Chr01	irgsp1_rep	CDS	5479359	5479449	.	+	1	Parent=Os01t0200700-01
Chr01	irgsp1_rep	three_prime_UTR	5479450	5479749	.	+	.	Parent=Os01t0200700-01
Chr01	irgsp1_rep	mRNA	5497443	5498906	.	-	.	ID=Os01t0200950-00;Name=Os01t0200950-00;Locus_id=Os01g0200950;Note=Non-protein coding transcript.;Transcript_evidence=BT069752 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0200950-00
Chr01	irgsp1_rep	exon	5498631	5498906	.	-	.	Parent=Os01t0200950-00
Chr01	irgsp1_rep	exon	5497783	5498356	.	-	.	Parent=Os01t0200950-00
Chr01	irgsp1_rep	exon	5497443	5497639	.	-	.	Parent=Os01t0200950-00
Chr01	irgsp1_rep	mRNA	5498215	5499226	.	+	.	ID=Os01t0201000-01;Name=Os01t0201000-01;Locus_id=Os01g0201000;Oryzabase Gene Symbol Synonym(s)=Orysa%3BCKL4;Oryzabase Gene Name Synonym(s)=CDK-LIKE 4%2C cyclin-dependent kinase-like 4;Note=Similar to protein kinase family protein.;Transcript_evidence=AK242352 (DDBJ%2C Best hit);ORF_evidence=NP_175713.1 (RefSeq);NIAS_FLcDNA=J080015E02;Oryzabase=13302;TENOR=Os01t0201000-01;KEGG=Os01t0201000-01
Chr01	irgsp1_rep	CDS	5498215	5498340	.	+	0	Parent=Os01t0201000-01
Chr01	irgsp1_rep	CDS	5498649	5498909	.	+	0	Parent=Os01t0201000-01
Chr01	irgsp1_rep	three_prime_UTR	5498910	5499226	.	+	.	Parent=Os01t0201000-01
Chr01	irgsp1_rep	mRNA	5507567	5509494	.	+	.	ID=Os01t0201100-01;Name=Os01t0201100-01;Locus_id=Os01g0201100;Note=Similar to xylosyltransferase oxt.;Transcript_evidence=AK243549 (DDBJ%2C Best hit);ORF_evidence=NP_001148073.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020),Molecular Function: acetylglucosaminyltransferase activity (GO:0008375);InterPro=Glycosyl transferase%2C family 14 (IPR003406);NIAS_FLcDNA=J100079F07;TENOR=Os01t0201100-01;KEGG=Os01t0201100-01
Chr01	irgsp1_rep	five_prime_UTR	5507567	5507616	.	+	.	Parent=Os01t0201100-01
Chr01	irgsp1_rep	CDS	5507617	5508328	.	+	0	Parent=Os01t0201100-01
Chr01	irgsp1_rep	CDS	5508410	5508485	.	+	2	Parent=Os01t0201100-01
Chr01	irgsp1_rep	CDS	5508580	5509234	.	+	1	Parent=Os01t0201100-01
Chr01	irgsp1_rep	three_prime_UTR	5509235	5509494	.	+	.	Parent=Os01t0201100-01
Chr01	irgsp1_rep	mRNA	5510522	5514454	.	-	.	ID=Os01t0201200-01;Name=Os01t0201200-01;Locus_id=Os01g0201200;Note=Similar to Protein kinase.;Transcript_evidence=AK069537 (DDBJ%2C Best hit);ORF_evidence=A2WLS4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023019I05;Expression=AK069537;TENOR=Os01t0201200-01;KEGG=Os01t0201200-01
Chr01	irgsp1_rep	five_prime_UTR	5514143	5514454	.	-	.	Parent=Os01t0201200-01
Chr01	irgsp1_rep	five_prime_UTR	5512952	5513286	.	-	.	Parent=Os01t0201200-01
Chr01	irgsp1_rep	CDS	5511959	5512951	.	-	0	Parent=Os01t0201200-01
Chr01	irgsp1_rep	CDS	5511099	5511554	.	-	0	Parent=Os01t0201200-01
Chr01	irgsp1_rep	CDS	5510748	5510990	.	-	0	Parent=Os01t0201200-01
Chr01	irgsp1_rep	three_prime_UTR	5510522	5510747	.	-	.	Parent=Os01t0201200-01
Chr01	irgsp1_rep	mRNA	5529876	5531014	.	-	.	ID=Os01t0201250-00;Name=Os01t0201250-00;Locus_id=Os01g0201250;Note=Similar to DNA-binding WRKY.;Transcript_evidence=AK360345 (DDBJ);ORF_evidence=NP_001150990.1 (RefSeq);InterPro=VQ (IPR008889);TENOR=Os01t0201250-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	5530376	5531014	.	-	0	Parent=Os01t0201250-00
Chr01	irgsp1_rep	three_prime_UTR	5529876	5530375	.	-	.	Parent=Os01t0201250-00
Chr01	irgsp1_rep	mRNA	5530408	5531111	.	+	.	ID=Os01t0201275-00;Name=Os01t0201275-00;Locus_id=Os01g0201275;CGSNL Gene Symbol=DH;CGSNL Gene Name=DOMINANT DWARF;Oryzabase Gene Symbol Synonym(s)=D-h(t)*%2C Dwf43%2C D-h;Oryzabase Gene Name Synonym(s)=Dominant dwarf;Note=Conserved hypothetical protein.;Transcript_evidence=BT019156 (DDBJ);ORF_evidence=Q5QN07 (UniProt);Oryzabase=2019;TENOR=Os01t0201275-00
Chr01	irgsp1_rep	five_prime_UTR	5530408	5530496	.	+	.	Parent=Os01t0201275-00
Chr01	irgsp1_rep	CDS	5530497	5531111	.	+	0	Parent=Os01t0201275-00
Chr01	irgsp1_rep	mRNA	5533238	5534034	.	+	.	ID=Os01t0201300-00;Name=Os01t0201300-00;Locus_id=Os01g0201300;Note=Non-protein coding transcript.;Transcript_evidence=CT835525 (DDBJ%2C Secondary hit);ORF_evidence=NONE;TENOR=Os01t0201300-00
Chr01	irgsp1_rep	exon	5533238	5533508	.	+	.	Parent=Os01t0201300-00
Chr01	irgsp1_rep	exon	5533580	5533650	.	+	.	Parent=Os01t0201300-00
Chr01	irgsp1_rep	exon	5533771	5534034	.	+	.	Parent=Os01t0201300-00
Chr01	irgsp1_rep	mRNA	5540631	5541520	.	-	.	ID=Os01t0201400-01;Name=Os01t0201400-01;Locus_id=Os01g0201400;CGSNL Gene Symbol=RALF3;CGSNL Gene Name=RAPID ALKALIZATION FACTOR 3;Oryzabase Gene Symbol Synonym(s)=OsRALF-3%2C OsRALF3%2C RALF-3;Oryzabase Gene Name Synonym(s)=Rapid alkalization factor 3;Note=Rapid ALkalinization Factor family protein.;Transcript_evidence=AK070397 (DDBJ%2C Best hit);ORF_evidence=B6TDV1 (UniProt);InterPro=Rapid ALkalinization Factor (IPR008801);NIAS_FLcDNA=J023049L07;Oryzabase=21107;Expression=AK070397;TENOR=Os01t0201400-01;KEGG=Os01t0201400-01
Chr01	irgsp1_rep	five_prime_UTR	5541402	5541520	.	-	.	Parent=Os01t0201400-01
Chr01	irgsp1_rep	CDS	5540961	5541401	.	-	0	Parent=Os01t0201400-01
Chr01	irgsp1_rep	three_prime_UTR	5540631	5540960	.	-	.	Parent=Os01t0201400-01
Chr01	irgsp1_rep	mRNA	5543648	5544544	.	-	.	ID=Os01t0201500-00;Name=Os01t0201500-00;Locus_id=Os01g0201500;CGSNL Gene Symbol=ENODL2;CGSNL Gene Name=EARLY NODULIN LIKE PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsENODL2;Oryzabase Gene Name Synonym(s)=early nodulin-like protein 2;Note=Similar to early nodulin 20.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001151407.1 (RefSeq);InterPro=Cupredoxin (IPR008972);Oryzabase=9727;TENOR=Os01t0201500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	5544352	5544544	.	-	0	Parent=Os01t0201500-00
Chr01	irgsp1_rep	CDS	5543648	5543871	.	-	2	Parent=Os01t0201500-00
Chr01	irgsp1_rep	mRNA	5549651	5551003	.	-	.	ID=Os01t0201600-01;Name=Os01t0201600-01;Locus_id=Os01g0201600;Note=Virulence factor%2C pectin lyase fold family protein.;Transcript_evidence=AK073568 (DDBJ%2C Best hit);ORF_evidence=Q5RZZ4 (UniProt);NIAS_FLcDNA=J033042J01;Expression=AK073568;TENOR=Os01t0201600-01;KEGG=Os01t0201600-01
Chr01	irgsp1_rep	five_prime_UTR	5550983	5551003	.	-	.	Parent=Os01t0201600-01
Chr01	irgsp1_rep	CDS	5550847	5550982	.	-	0	Parent=Os01t0201600-01
Chr01	irgsp1_rep	CDS	5550327	5550768	.	-	2	Parent=Os01t0201600-01
Chr01	irgsp1_rep	CDS	5549908	5550235	.	-	1	Parent=Os01t0201600-01
Chr01	irgsp1_rep	three_prime_UTR	5549651	5549907	.	-	.	Parent=Os01t0201600-01
Chr01	irgsp1_rep	mRNA	5549651	5549759	.	-	.	ID=Os01t0201600-02;Name=Os01t0201600-02;Locus_id=Os01g0201600;Note=Non-protein coding transcript.;Transcript_evidence=AK058956 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-020-B04;TENOR=Os01t0201600-02
Chr01	irgsp1_rep	exon	5549651	5549759	.	-	.	Parent=Os01t0201600-02
Chr01	irgsp1_rep	mRNA	5559532	5568924	.	-	.	ID=Os01t0201700-01;Name=Os01t0201700-01;Locus_id=Os01g0201700;CGSNL Gene Symbol=RAG;CGSNL Gene Name=RICE AGAMOUS;Oryzabase Gene Symbol Synonym(s)=MADS3%2C OsMADS3%2C OsMADS3(t)%2C RMADS222%2C RAG1;Oryzabase Gene Name Synonym(s)=MADS box gene3%2C MADS-box transcription factor 3%2C Protein AGAMOUS-like;Note=Similar to M23 protein (Fragment).;Transcript_evidence=AK108568 (DDBJ%2C Best hit);ORF_evidence=Q84V75 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box (IPR002100);NIAS_FLcDNA=002-145-D02;Oryzabase=8429;TENOR=Os01t0201700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	5568715	5568924	.	-	.	Parent=Os01t0201700-01
Chr01	irgsp1_rep	CDS	5568685	5568714	.	-	0	Parent=Os01t0201700-01
Chr01	irgsp1_rep	CDS	5568067	5568353	.	-	0	Parent=Os01t0201700-01
Chr01	irgsp1_rep	CDS	5562638	5562719	.	-	1	Parent=Os01t0201700-01
Chr01	irgsp1_rep	CDS	5561466	5561527	.	-	0	Parent=Os01t0201700-01
Chr01	irgsp1_rep	CDS	5561381	5561399	.	-	1	Parent=Os01t0201700-01
Chr01	irgsp1_rep	three_prime_UTR	5561268	5561380	.	-	.	Parent=Os01t0201700-01
Chr01	irgsp1_rep	three_prime_UTR	5561039	5561080	.	-	.	Parent=Os01t0201700-01
Chr01	irgsp1_rep	three_prime_UTR	5560876	5560917	.	-	.	Parent=Os01t0201700-01
Chr01	irgsp1_rep	three_prime_UTR	5560589	5560764	.	-	.	Parent=Os01t0201700-01
Chr01	irgsp1_rep	three_prime_UTR	5560377	5560435	.	-	.	Parent=Os01t0201700-01
Chr01	irgsp1_rep	three_prime_UTR	5559696	5559977	.	-	.	Parent=Os01t0201700-01
Chr01	irgsp1_rep	three_prime_UTR	5559532	5559637	.	-	.	Parent=Os01t0201700-01
Chr01	irgsp1_rep	mRNA	5560202	5568844	.	-	.	ID=Os01t0201700-02;Name=Os01t0201700-02;Locus_id=Os01g0201700;RAP-DB Gene Symbol Synonym(s)=RAG%2C MADS3%2C OsMADS3%2C OsMADS3(t)%2C RMADS222%2C RAG1;RAP-DB Gene Name Synonym(s)=RICE AGAMOUS%2C MADS box gene3%2C MADS-box transcription factor 3%2C Protein AGAMOUS-like;CGSNL Gene Symbol=RAG;CGSNL Gene Name=RICE AGAMOUS;Oryzabase Gene Symbol Synonym(s)=MADS3%2C OsMADS3%2C OsMADS3(t)%2C RMADS222%2C RAG1;Oryzabase Gene Name Synonym(s)=MADS box gene3%2C MADS-box transcription factor 3%2C Protein AGAMOUS-like;Note=Transcription factor%2C Floral organ development%2C Lodicule development%2C  Stamen specification%2C Floral meristem determinacy%2C Male reproductive development;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein dimerization activity (GO:0046983),Cellular Component: nucleus (GO:0005634);InterPro=Transcription factor%2C MADS-box (IPR002100),Transcription factor%2C K-box (IPR002487);Manual Curation=May 21%2C 2015;Literature_PMID=21297036,16326928,11828031,7579155;Oryzabase=8429
Chr01	irgsp1_rep	five_prime_UTR	5568700	5568844	.	-	.	Parent=Os01t0201700-02
Chr01	irgsp1_rep	CDS	5568685	5568699	.	-	0	Parent=Os01t0201700-02
Chr01	irgsp1_rep	CDS	5568067	5568353	.	-	0	Parent=Os01t0201700-02
Chr01	irgsp1_rep	CDS	5562638	5562719	.	-	1	Parent=Os01t0201700-02
Chr01	irgsp1_rep	CDS	5561466	5561527	.	-	0	Parent=Os01t0201700-02
Chr01	irgsp1_rep	CDS	5561268	5561370	.	-	1	Parent=Os01t0201700-02
Chr01	irgsp1_rep	CDS	5561039	5561080	.	-	0	Parent=Os01t0201700-02
Chr01	irgsp1_rep	CDS	5560876	5560917	.	-	0	Parent=Os01t0201700-02
Chr01	irgsp1_rep	CDS	5560589	5560764	.	-	0	Parent=Os01t0201700-02
Chr01	irgsp1_rep	CDS	5560414	5560435	.	-	1	Parent=Os01t0201700-02
Chr01	irgsp1_rep	three_prime_UTR	5560202	5560413	.	-	.	Parent=Os01t0201700-02
Chr01	irgsp1_rep	mRNA	5568902	5572385	.	+	.	ID=Os01t0201750-01;Name=Os01t0201750-01;Locus_id=Os01g0201750;Note=Non-protein coding transcript.;Transcript_evidence=AK289152 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090099O11;TENOR=Os01t0201750-01
Chr01	irgsp1_rep	exon	5568902	5572385	.	+	.	Parent=Os01t0201750-01
Chr01	irgsp1_rep	mRNA	5579959	5585078	.	-	.	ID=Os01t0201800-00;Name=Os01t0201800-00;Locus_id=Os01g0201800;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5QN38 (UniProt);TENOR=Os01t0201800-00;KEGG=Os01t0201800-00
Chr01	irgsp1_rep	CDS	5584683	5585078	.	-	0	Parent=Os01t0201800-00
Chr01	irgsp1_rep	CDS	5579959	5581761	.	-	0	Parent=Os01t0201800-00
Chr01	irgsp1_rep	mRNA	5581650	5588943	.	+	.	ID=Os01t0201850-01;Name=Os01t0201850-01;Locus_id=Os01g0201850;Note=Hypothetical conserved gene.;Transcript_evidence=AK288797 (DDBJ%2C Best hit);ORF_evidence=Q8SAZ6 (UniProt);NIAS_FLcDNA=J090070G10;TENOR=Os01t0201850-01
Chr01	irgsp1_rep	five_prime_UTR	5581650	5588797	.	+	.	Parent=Os01t0201850-01
Chr01	irgsp1_rep	CDS	5588798	5588943	.	+	0	Parent=Os01t0201850-01
Chr01	irgsp1_rep	mRNA	5591697	5596237	.	-	.	ID=Os01t0201900-01;Name=Os01t0201900-01;Locus_id=Os01g0201900;CGSNL Gene Symbol=NIP1%3B5;CGSNL Gene Name=NOD26 LIKE INTRINSIC PROTEIN 1%3B5;Oryzabase Gene Symbol Synonym(s)=OsNIP1%3B5%2C NIP1-5;Oryzabase Gene Name Synonym(s)=Aquaporin NIP1-5%2C NOD26-like intrinsic protein 1-5;Note=Conserved hypothetical protein.;Transcript_evidence=AK106359 (DDBJ%2C Best hit);ORF_evidence=A2WLT2 (UniProt);NIAS_FLcDNA=002-102-A10;Oryzabase=19068;TENOR=Os01t0201900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	5596237	5596237	.	-	.	Parent=Os01t0201900-01
Chr01	irgsp1_rep	CDS	5594311	5596236	.	-	0	Parent=Os01t0201900-01
Chr01	irgsp1_rep	three_prime_UTR	5594242	5594310	.	-	.	Parent=Os01t0201900-01
Chr01	irgsp1_rep	three_prime_UTR	5593566	5593833	.	-	.	Parent=Os01t0201900-01
Chr01	irgsp1_rep	three_prime_UTR	5591697	5591863	.	-	.	Parent=Os01t0201900-01
Chr01	irgsp1_rep	mRNA	5639835	5641475	.	+	.	ID=Os01t0202500-01;Name=Os01t0202500-01;Locus_id=Os01g0202500;Oryzabase Gene Symbol Synonym(s)=OsBBX1%2C OsDBB3c%2C BBX1%2C DBB3c;Oryzabase Gene Name Synonym(s)=B-box-containing protein 1%2C DOUBLE B-BOX zinc finger gene 3c%2C DOUBLE B-BOX 3c;Note=Similar to B-box zinc finger family protein.;Transcript_evidence=AK242176 (DDBJ%2C Best hit);ORF_evidence=B4FZE2 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C B-box (IPR000315);NIAS_FLcDNA=J075159I15;Oryzabase=11633;TENOR=Os01t0202500-01;KEGG=Os01t0202500-01
Chr01	irgsp1_rep	five_prime_UTR	5639835	5639835	.	+	.	Parent=Os01t0202500-01
Chr01	irgsp1_rep	CDS	5639836	5640564	.	+	0	Parent=Os01t0202500-01
Chr01	irgsp1_rep	CDS	5640766	5641101	.	+	0	Parent=Os01t0202500-01
Chr01	irgsp1_rep	three_prime_UTR	5641102	5641475	.	+	.	Parent=Os01t0202500-01
Chr01	irgsp1_rep	mRNA	5645689	5646994	.	+	.	ID=Os01t0202601-00;Name=Os01t0202601-00;Locus_id=Os01g0202601;Note=Conserved hypothetical protein.;Transcript_evidence=AK359240 (DDBJ);ORF_evidence=F2DDB1 (UniProt);TENOR=Os01t0202601-00
Chr01	irgsp1_rep	five_prime_UTR	5645689	5645761	.	+	.	Parent=Os01t0202601-00
Chr01	irgsp1_rep	CDS	5645762	5645803	.	+	0	Parent=Os01t0202601-00
Chr01	irgsp1_rep	CDS	5646146	5646236	.	+	0	Parent=Os01t0202601-00
Chr01	irgsp1_rep	CDS	5646413	5646490	.	+	2	Parent=Os01t0202601-00
Chr01	irgsp1_rep	CDS	5646861	5646994	.	+	2	Parent=Os01t0202601-00
Chr01	irgsp1_rep	mRNA	5652593	5655352	.	+	.	ID=Os01t0202700-00;Name=Os01t0202700-00;Locus_id=Os01g0202700;CGSNL Gene Symbol=FTL8;CGSNL Gene Name=FLOWERING TIME LIKE GENE 8;Oryzabase Gene Symbol Synonym(s)=FT-L 8%2C OsFTL8;Oryzabase Gene Name Synonym(s)=FT-like gene 8;Note=Similar to Flowering locus T3.;Transcript_evidence=ab initio prediction;ORF_evidence=E5LCW6 (UniProt);InterPro=Phosphatidylethanolamine-binding protein PEBP (IPR008914);Oryzabase=11230;TENOR=Os01t0202700-00
Chr01	irgsp1_rep	CDS	5652593	5652784	.	+	0	Parent=Os01t0202700-00
Chr01	irgsp1_rep	CDS	5652896	5652945	.	+	0	Parent=Os01t0202700-00
Chr01	irgsp1_rep	CDS	5653130	5653170	.	+	1	Parent=Os01t0202700-00
Chr01	irgsp1_rep	CDS	5655105	5655352	.	+	2	Parent=Os01t0202700-00
Chr01	irgsp1_rep	mRNA	5663306	5665832	.	-	.	ID=Os01t0202800-00;Name=Os01t0202800-00;Locus_id=Os01g0202800;CGSNL Gene Symbol=NIP1%3B2;CGSNL Gene Name=NOD26 LIKE INTRINSIC PROTEIN 1%3B2;Oryzabase Gene Symbol Synonym(s)=OsNIP1%3B2%2C NIP1-2%2C OsNIP1.2%2C NIP1.2;Oryzabase Gene Name Synonym(s)=Aquaporin NIP1-2%2C NOD26-like intrinsic protein 1-2;Note=Similar to NOD26-like membrane integral protein ZmNIP1-1.;Transcript_evidence=EU972991 (DDBJ);ORF_evidence=Q0JPT5 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: water transport (GO:0006833),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Aquaporin (IPR012269),Major intrinsic protein%2C conserved site (IPR022357),Aquaporin-like (IPR023271);Oryzabase=8518;TENOR=Os01t0202800-00;KEGG=Os01t0202800-00
Chr01	irgsp1_rep	CDS	5665521	5665832	.	-	0	Parent=Os01t0202800-00
Chr01	irgsp1_rep	CDS	5664037	5664252	.	-	0	Parent=Os01t0202800-00
Chr01	irgsp1_rep	CDS	5663891	5663952	.	-	0	Parent=Os01t0202800-00
Chr01	irgsp1_rep	CDS	5663323	5663536	.	-	1	Parent=Os01t0202800-00
Chr01	irgsp1_rep	three_prime_UTR	5663306	5663322	.	-	.	Parent=Os01t0202800-00
Chr01	irgsp1_rep	mRNA	5669291	5671467	.	-	.	ID=Os01t0203000-01;Name=Os01t0203000-01;Locus_id=Os01g0203000;CGSNL Gene Symbol=BZR2;CGSNL Gene Name=BRASSINAZOLE RESISTANT 2;Oryzabase Gene Symbol Synonym(s)=OsBZR2;Oryzabase Gene Name Synonym(s)=BRASSINAZOLE-RESISTANT2;Note=BZR1%2C transcriptional repressor family protein.;Transcript_evidence=AK067471 (DDBJ%2C Best hit);ORF_evidence=B4FHG9 (UniProt);InterPro=BZR1%2C transcriptional repressor (IPR008540);NIAS_FLcDNA=J013107L10;Oryzabase=22435;Expression=AK067471;TENOR=Os01t0203000-01;KEGG=Os01t0203000-01
Chr01	irgsp1_rep	five_prime_UTR	5671330	5671467	.	-	.	Parent=Os01t0203000-01
Chr01	irgsp1_rep	CDS	5671039	5671329	.	-	0	Parent=Os01t0203000-01
Chr01	irgsp1_rep	CDS	5669291	5670094	.	-	0	Parent=Os01t0203000-01
Chr01	irgsp1_rep	mRNA	5675669	5679548	.	-	.	ID=Os01t0203300-01;Name=Os01t0203300-01;Locus_id=Os01g0203300;Note=Conserved hypothetical protein.;Transcript_evidence=AK106329 (DDBJ%2C Best hit);ORF_evidence=B8A6L0 (UniProt);NIAS_FLcDNA=002-101-F05;Expression=AK106329;TENOR=Os01t0203300-01;KEGG=Os01t0203300-01
Chr01	irgsp1_rep	five_prime_UTR	5679521	5679548	.	-	.	Parent=Os01t0203300-01
Chr01	irgsp1_rep	CDS	5679177	5679520	.	-	0	Parent=Os01t0203300-01
Chr01	irgsp1_rep	CDS	5677878	5677995	.	-	1	Parent=Os01t0203300-01
Chr01	irgsp1_rep	CDS	5677579	5677782	.	-	0	Parent=Os01t0203300-01
Chr01	irgsp1_rep	three_prime_UTR	5677530	5677578	.	-	.	Parent=Os01t0203300-01
Chr01	irgsp1_rep	three_prime_UTR	5677360	5677427	.	-	.	Parent=Os01t0203300-01
Chr01	irgsp1_rep	three_prime_UTR	5676740	5676873	.	-	.	Parent=Os01t0203300-01
Chr01	irgsp1_rep	three_prime_UTR	5675669	5676277	.	-	.	Parent=Os01t0203300-01
Chr01	irgsp1_rep	mRNA	5685594	5686401	.	+	.	ID=Os01t0203400-01;Name=Os01t0203400-01;Locus_id=Os01g0203400;Oryzabase Gene Symbol Synonym(s)=OsCEP7%2C CEP7%2C OsCEP8%2C CEP8;Oryzabase Gene Name Synonym(s)=C-TERMINALLY ENCODED PEPTIDE 7;Note=Hypothetical protein.;Transcript_evidence=AK120469 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013109F03;Oryzabase=20956;Expression=AK120469;TENOR=Os01t0203400-01;KEGG=Os01t0203400-01
Chr01	irgsp1_rep	five_prime_UTR	5685594	5685698	.	+	.	Parent=Os01t0203400-01
Chr01	irgsp1_rep	CDS	5685699	5686025	.	+	0	Parent=Os01t0203400-01
Chr01	irgsp1_rep	three_prime_UTR	5686026	5686401	.	+	.	Parent=Os01t0203400-01
Chr01	irgsp1_rep	mRNA	5699652	5707756	.	-	.	ID=Os01t0203800-01;Name=Os01t0203800-01;Locus_id=Os01g0203800;Note=Protein of unknown function DUF641%2C plant domain containing protein.;Transcript_evidence=AK100265 (DDBJ%2C Best hit);ORF_evidence=A2WLU3 (UniProt);InterPro=Domain of unknown function DUF641%2C plant (IPR006943);NIAS_FLcDNA=J023064J20;Expression=AK100265;TENOR=Os01t0203800-01;KEGG=Os01t0203800-01
Chr01	irgsp1_rep	five_prime_UTR	5707420	5707756	.	-	.	Parent=Os01t0203800-01
Chr01	irgsp1_rep	five_prime_UTR	5701426	5701523	.	-	.	Parent=Os01t0203800-01
Chr01	irgsp1_rep	CDS	5699863	5701425	.	-	0	Parent=Os01t0203800-01
Chr01	irgsp1_rep	three_prime_UTR	5699652	5699862	.	-	.	Parent=Os01t0203800-01
Chr01	irgsp1_rep	mRNA	5699653	5701472	.	-	.	ID=Os01t0203800-02;Name=Os01t0203800-02;Locus_id=Os01g0203800;Note=Protein of unknown function DUF641%2C plant domain containing protein.;Transcript_evidence=AK101527 (DDBJ%2C Best hit);ORF_evidence=A2WLU3 (UniProt);InterPro=Domain of unknown function DUF641%2C plant (IPR006943);NIAS_FLcDNA=J033047A10;Expression=AK101527;TENOR=Os01t0203800-02;KEGG=Os01t0203800-02
Chr01	irgsp1_rep	five_prime_UTR	5701426	5701472	.	-	.	Parent=Os01t0203800-02
Chr01	irgsp1_rep	CDS	5699863	5701425	.	-	0	Parent=Os01t0203800-02
Chr01	irgsp1_rep	three_prime_UTR	5699653	5699862	.	-	.	Parent=Os01t0203800-02
Chr01	irgsp1_rep	mRNA	5699710	5701591	.	+	.	ID=Os01t0203900-00;Name=Os01t0203900-00;Locus_id=Os01g0203900;Note=Hypothetical protein.;Transcript_evidence=AK358087 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0203900-00
Chr01	irgsp1_rep	five_prime_UTR	5699710	5700804	.	+	.	Parent=Os01t0203900-00
Chr01	irgsp1_rep	CDS	5700805	5701584	.	+	0	Parent=Os01t0203900-00
Chr01	irgsp1_rep	three_prime_UTR	5701585	5701591	.	+	.	Parent=Os01t0203900-00
Chr01	irgsp1_rep	mRNA	5718902	5724184	.	-	.	ID=Os01t0204000-01;Name=Os01t0204000-01;Locus_id=Os01g0204000;Note=DNA polymerase subunit Cdc27 domain containing protein.;Transcript_evidence=AK101188 (DDBJ%2C Best hit),AK101572 (DDBJ%2C Best hit);ORF_evidence=B8A6L1 (UniProt);GO=Biological Process: DNA replication (GO:0006260),Cellular Component: nucleus (GO:0005634);InterPro=DNA polymerase subunit Cdc27 (IPR019038);NIAS_FLcDNA=J033030D20,J033050J10;Expression=AK101188;TENOR=Os01t0204000-01;KEGG=Os01t0204000-01
Chr01	irgsp1_rep	five_prime_UTR	5724033	5724184	.	-	.	Parent=Os01t0204000-01
Chr01	irgsp1_rep	CDS	5723952	5724032	.	-	0	Parent=Os01t0204000-01
Chr01	irgsp1_rep	CDS	5722756	5722811	.	-	0	Parent=Os01t0204000-01
Chr01	irgsp1_rep	CDS	5722541	5722665	.	-	1	Parent=Os01t0204000-01
Chr01	irgsp1_rep	CDS	5722260	5722419	.	-	2	Parent=Os01t0204000-01
Chr01	irgsp1_rep	CDS	5721612	5722024	.	-	1	Parent=Os01t0204000-01
Chr01	irgsp1_rep	CDS	5720990	5721472	.	-	2	Parent=Os01t0204000-01
Chr01	irgsp1_rep	CDS	5720303	5720384	.	-	2	Parent=Os01t0204000-01
Chr01	irgsp1_rep	CDS	5719421	5719559	.	-	1	Parent=Os01t0204000-01
Chr01	irgsp1_rep	three_prime_UTR	5718902	5719420	.	-	.	Parent=Os01t0204000-01
Chr01	irgsp1_rep	mRNA	5718902	5723471	.	-	.	ID=Os01t0204000-02;Name=Os01t0204000-02;Locus_id=Os01g0204000;Note=Hypothetical conserved gene.;Transcript_evidence=AK067829 (DDBJ%2C Best hit);ORF_evidence=B8A6L1 (UniProt);GO=Biological Process: DNA replication (GO:0006260),Cellular Component: nucleus (GO:0005634);InterPro=DNA polymerase subunit Cdc27 (IPR019038);NIAS_FLcDNA=J013121A07;Expression=AK067829;TENOR=Os01t0204000-02;KEGG=Os01t0204000-02
Chr01	irgsp1_rep	five_prime_UTR	5722815	5723471	.	-	.	Parent=Os01t0204000-02
Chr01	irgsp1_rep	CDS	5722756	5722814	.	-	0	Parent=Os01t0204000-02
Chr01	irgsp1_rep	CDS	5722541	5722665	.	-	1	Parent=Os01t0204000-02
Chr01	irgsp1_rep	CDS	5722260	5722419	.	-	2	Parent=Os01t0204000-02
Chr01	irgsp1_rep	CDS	5721612	5722024	.	-	1	Parent=Os01t0204000-02
Chr01	irgsp1_rep	CDS	5720990	5721472	.	-	2	Parent=Os01t0204000-02
Chr01	irgsp1_rep	CDS	5720303	5720384	.	-	2	Parent=Os01t0204000-02
Chr01	irgsp1_rep	CDS	5719421	5719559	.	-	1	Parent=Os01t0204000-02
Chr01	irgsp1_rep	three_prime_UTR	5718902	5719420	.	-	.	Parent=Os01t0204000-02
Chr01	irgsp1_rep	mRNA	5760486	5764602	.	+	.	ID=Os01t0205100-01;Name=Os01t0205100-01;Locus_id=Os01g0205100;Oryzabase Gene Symbol Synonym(s)=OsWD40-8;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK121987 (DDBJ%2C Best hit);ORF_evidence=NP_568648.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J033109B05;Oryzabase=10689;Expression=AK121987;TENOR=Os01t0205100-01;KEGG=Os01t0205100-01
Chr01	irgsp1_rep	five_prime_UTR	5760486	5760504	.	+	.	Parent=Os01t0205100-01
Chr01	irgsp1_rep	CDS	5760505	5760639	.	+	0	Parent=Os01t0205100-01
Chr01	irgsp1_rep	CDS	5761497	5761593	.	+	0	Parent=Os01t0205100-01
Chr01	irgsp1_rep	CDS	5761694	5761755	.	+	2	Parent=Os01t0205100-01
Chr01	irgsp1_rep	CDS	5761842	5761898	.	+	0	Parent=Os01t0205100-01
Chr01	irgsp1_rep	CDS	5762062	5762118	.	+	0	Parent=Os01t0205100-01
Chr01	irgsp1_rep	CDS	5762600	5762656	.	+	0	Parent=Os01t0205100-01
Chr01	irgsp1_rep	CDS	5762780	5762822	.	+	0	Parent=Os01t0205100-01
Chr01	irgsp1_rep	CDS	5762969	5763046	.	+	2	Parent=Os01t0205100-01
Chr01	irgsp1_rep	CDS	5763312	5763633	.	+	2	Parent=Os01t0205100-01
Chr01	irgsp1_rep	CDS	5763710	5763857	.	+	1	Parent=Os01t0205100-01
Chr01	irgsp1_rep	CDS	5764031	5764120	.	+	0	Parent=Os01t0205100-01
Chr01	irgsp1_rep	three_prime_UTR	5764121	5764602	.	+	.	Parent=Os01t0205100-01
Chr01	irgsp1_rep	mRNA	5764652	5766659	.	-	.	ID=Os01t0205200-01;Name=Os01t0205200-01;Locus_id=Os01g0205200;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK110817 (DDBJ%2C Best hit);ORF_evidence=XP_002445851.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-171-G05;TENOR=Os01t0205200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	5766658	5766659	.	-	.	Parent=Os01t0205200-01
Chr01	irgsp1_rep	CDS	5764654	5766657	.	-	0	Parent=Os01t0205200-01
Chr01	irgsp1_rep	three_prime_UTR	5764652	5764653	.	-	.	Parent=Os01t0205200-01
Chr01	irgsp1_rep	mRNA	5768175	5769203	.	+	.	ID=Os01t0205300-00;Name=Os01t0205300-00;Locus_id=Os01g0205300;Note=Similar to rho termination factor%2C N-terminal domain containing protein.;Transcript_evidence=EU971948 (DDBJ);ORF_evidence=NP_001151708.1 (RefSeq);GO=Biological Process: transcription termination%2C DNA-dependent (GO:0006353);InterPro=Rho termination factor%2C N-terminal (IPR011112);TENOR=Os01t0205300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	5768175	5768287	.	+	.	Parent=Os01t0205300-00
Chr01	irgsp1_rep	CDS	5768288	5768384	.	+	0	Parent=Os01t0205300-00
Chr01	irgsp1_rep	CDS	5768600	5768851	.	+	2	Parent=Os01t0205300-00
Chr01	irgsp1_rep	CDS	5769040	5769203	.	+	2	Parent=Os01t0205300-00
Chr01	irgsp1_rep	mRNA	5769842	5769914	.	+	.	ID=Os01t0205401-00;Name=Os01t0205401-00;Locus_id=Os01g0205401;Note=Non-protein coding transcript.;Transcript_evidence=X06284 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0205401-00
Chr01	irgsp1_rep	exon	5769842	5769914	.	+	.	Parent=Os01t0205401-00
Chr01	irgsp1_rep	mRNA	5770062	5772270	.	+	.	ID=Os01t0205500-01;Name=Os01t0205500-01;Locus_id=Os01g0205500;Oryzabase Gene Name Synonym(s)=Ribosomal protein L11e;Note=Similar to 60S ribosomal protein L11-2 (L16). Splice isoform 2.;Transcript_evidence=AK067763 (DDBJ%2C Best hit);ORF_evidence=Q0DK10 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L5 (IPR002132),Ribosomal protein L5%2C conserved site (IPR020929),Ribosomal protein L5 domain (IPR022803);NIAS_FLcDNA=J013120K02;Oryzabase=17656;Expression=AK067763;TENOR=Os01t0205500-01;KEGG=Os01t0205500-01
Chr01	irgsp1_rep	five_prime_UTR	5770062	5770149	.	+	.	Parent=Os01t0205500-01
Chr01	irgsp1_rep	CDS	5770150	5770152	.	+	0	Parent=Os01t0205500-01
Chr01	irgsp1_rep	CDS	5770268	5770375	.	+	0	Parent=Os01t0205500-01
Chr01	irgsp1_rep	CDS	5770812	5770854	.	+	0	Parent=Os01t0205500-01
Chr01	irgsp1_rep	CDS	5770945	5771140	.	+	2	Parent=Os01t0205500-01
Chr01	irgsp1_rep	CDS	5771836	5772034	.	+	1	Parent=Os01t0205500-01
Chr01	irgsp1_rep	three_prime_UTR	5772035	5772270	.	+	.	Parent=Os01t0205500-01
Chr01	irgsp1_rep	mRNA	5770252	5772046	.	-	.	ID=Os01t0205550-00;Name=Os01t0205550-00;Locus_id=Os01g0205550;Note=Non-protein coding transcript.;Transcript_evidence=BT016915 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0205550-00
Chr01	irgsp1_rep	exon	5771861	5772046	.	-	.	Parent=Os01t0205550-00
Chr01	irgsp1_rep	exon	5770917	5771163	.	-	.	Parent=Os01t0205550-00
Chr01	irgsp1_rep	exon	5770252	5770393	.	-	.	Parent=Os01t0205550-00
Chr01	irgsp1_rep	mRNA	5773300	5774176	.	+	.	ID=Os01t0205600-01;Name=Os01t0205600-01;Locus_id=Os01g0205600;Note=Crotonase%2C core domain containing protein.;Transcript_evidence=AK067719 (DDBJ%2C Best hit);ORF_evidence=NP_001151890.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Crotonase%2C core (IPR001753);NIAS_FLcDNA=J013121K01;Expression=AK067719;TENOR=Os01t0205600-01;KEGG=Os01t0205600-01
Chr01	irgsp1_rep	five_prime_UTR	5773300	5773339	.	+	.	Parent=Os01t0205600-01
Chr01	irgsp1_rep	CDS	5773340	5774083	.	+	0	Parent=Os01t0205600-01
Chr01	irgsp1_rep	three_prime_UTR	5774084	5774176	.	+	.	Parent=Os01t0205600-01
Chr01	irgsp1_rep	mRNA	5774293	5776922	.	-	.	ID=Os01t0205700-01;Name=Os01t0205700-01;Locus_id=Os01g0205700;Oryzabase Gene Symbol Synonym(s)=GSK1%2C Os GSK1%2C OsGSK1%2C OsSK21/OsGSK1%2C OsSK21%2C SK21;Oryzabase Gene Name Synonym(s)=GSK3/SHAGGY-Like Kinase 1%2C glycogen synthase kinase3-like gene 1%2C GSK3/SHAGGY-Like Kinase 21%2C GSK3-like Kinase 1;Note=Similar to Shaggy-like kinase (Fragment).;Transcript_evidence=AK099863 (DDBJ%2C Best hit);ORF_evidence=B6TBH6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013111B17;Oryzabase=10941;Expression=AK099863;TENOR=Os01t0205700-01;KEGG=Os01t0205700-01 (EC:2.7.11.26)
Chr01	irgsp1_rep	CDS	5776845	5776922	.	-	0	Parent=Os01t0205700-01
Chr01	irgsp1_rep	CDS	5776704	5776760	.	-	0	Parent=Os01t0205700-01
Chr01	irgsp1_rep	CDS	5776105	5776245	.	-	0	Parent=Os01t0205700-01
Chr01	irgsp1_rep	CDS	5775950	5776000	.	-	0	Parent=Os01t0205700-01
Chr01	irgsp1_rep	CDS	5775777	5775872	.	-	0	Parent=Os01t0205700-01
Chr01	irgsp1_rep	CDS	5775527	5775610	.	-	0	Parent=Os01t0205700-01
Chr01	irgsp1_rep	CDS	5774960	5775061	.	-	0	Parent=Os01t0205700-01
Chr01	irgsp1_rep	CDS	5774771	5774863	.	-	0	Parent=Os01t0205700-01
Chr01	irgsp1_rep	three_prime_UTR	5774293	5774770	.	-	.	Parent=Os01t0205700-01
Chr01	irgsp1_rep	mRNA	5774960	5778040	.	+	.	ID=Os01t0205800-00;Name=Os01t0205800-00;Locus_id=Os01g0205800;Note=Non-protein coding transcript.;Transcript_evidence=tplb0034j24 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os01t0205800-00
Chr01	irgsp1_rep	exon	5774960	5775055	.	+	.	Parent=Os01t0205800-00
Chr01	irgsp1_rep	exon	5775518	5775601	.	+	.	Parent=Os01t0205800-00
Chr01	irgsp1_rep	exon	5775764	5775906	.	+	.	Parent=Os01t0205800-00
Chr01	irgsp1_rep	exon	5776097	5776248	.	+	.	Parent=Os01t0205800-00
Chr01	irgsp1_rep	exon	5776707	5776746	.	+	.	Parent=Os01t0205800-00
Chr01	irgsp1_rep	exon	5776824	5776936	.	+	.	Parent=Os01t0205800-00
Chr01	irgsp1_rep	exon	5777020	5777298	.	+	.	Parent=Os01t0205800-00
Chr01	irgsp1_rep	exon	5777935	5778040	.	+	.	Parent=Os01t0205800-00
Chr01	irgsp1_rep	mRNA	5789333	5790735	.	+	.	ID=Os01t0205900-01;Name=Os01t0205900-01;Locus_id=Os01g0205900;Oryzabase Gene Symbol Synonym(s)=prx2;Oryzabase Gene Name Synonym(s)=class III peroxidase 2;Note=Similar to Class III peroxidase GvPx2b (Fragment).;Transcript_evidence=AK105932 (DDBJ%2C Best hit);ORF_evidence=Q5U1U1 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=001-205-B03;Oryzabase=14532;Expression=AK105932;TENOR=Os01t0205900-01;KEGG=Os01t0205900-01
Chr01	irgsp1_rep	five_prime_UTR	5789333	5789526	.	+	.	Parent=Os01t0205900-01
Chr01	irgsp1_rep	CDS	5789527	5789745	.	+	0	Parent=Os01t0205900-01
Chr01	irgsp1_rep	CDS	5789825	5790016	.	+	0	Parent=Os01t0205900-01
Chr01	irgsp1_rep	CDS	5790083	5790655	.	+	0	Parent=Os01t0205900-01
Chr01	irgsp1_rep	three_prime_UTR	5790656	5790735	.	+	.	Parent=Os01t0205900-01
Chr01	irgsp1_rep	mRNA	5789426	5790753	.	+	.	ID=Os01t0205900-02;Name=Os01t0205900-02;Locus_id=Os01g0205900;Oryzabase Gene Symbol Synonym(s)=prx2;Oryzabase Gene Name Synonym(s)=class III peroxidase 2;Note=Similar to Class III peroxidase GvPx2b (Fragment).;Transcript_evidence=AK060687 (DDBJ%2C Best hit);ORF_evidence=Q5U1U1 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=001-029-H05;Oryzabase=14532;Expression=AK060687;TENOR=Os01t0205900-02;KEGG=Os01t0205900-02
Chr01	irgsp1_rep	five_prime_UTR	5789426	5789526	.	+	.	Parent=Os01t0205900-02
Chr01	irgsp1_rep	CDS	5789527	5789745	.	+	0	Parent=Os01t0205900-02
Chr01	irgsp1_rep	CDS	5789825	5790016	.	+	0	Parent=Os01t0205900-02
Chr01	irgsp1_rep	CDS	5790083	5790655	.	+	0	Parent=Os01t0205900-02
Chr01	irgsp1_rep	three_prime_UTR	5790656	5790753	.	+	.	Parent=Os01t0205900-02
Chr01	irgsp1_rep	mRNA	5794832	5797674	.	-	.	ID=Os01t0206200-01;Name=Os01t0206200-01;Locus_id=Os01g0206200;Note=Conserved hypothetical protein.;Transcript_evidence=AK102840 (DDBJ%2C Best hit);ORF_evidence=B8A6K5 (UniProt);NIAS_FLcDNA=J033109M13;TENOR=Os01t0206200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	5797599	5797674	.	-	.	Parent=Os01t0206200-01
Chr01	irgsp1_rep	CDS	5797500	5797598	.	-	0	Parent=Os01t0206200-01
Chr01	irgsp1_rep	CDS	5797301	5797399	.	-	0	Parent=Os01t0206200-01
Chr01	irgsp1_rep	CDS	5797124	5797207	.	-	0	Parent=Os01t0206200-01
Chr01	irgsp1_rep	CDS	5796856	5797008	.	-	0	Parent=Os01t0206200-01
Chr01	irgsp1_rep	CDS	5795140	5795346	.	-	0	Parent=Os01t0206200-01
Chr01	irgsp1_rep	three_prime_UTR	5794832	5795139	.	-	.	Parent=Os01t0206200-01
Chr01	irgsp1_rep	mRNA	5799607	5801142	.	+	.	ID=Os01t0206300-00;Name=Os01t0206300-00;Locus_id=Os01g0206300;CGSNL Gene Symbol=CIPK13;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 13;Oryzabase Gene Symbol Synonym(s)=OsCIPK13;Oryzabase Gene Name Synonym(s)=Putative CBL-interacting protein kinase 13;Note=Similar to CBL-interacting protein kinase 18.;Transcript_evidence=Q5QNM6 (UniProt);ORF_evidence=Q5QNM6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),NAF domain (IPR004041),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),NAF/FISL domain (IPR018451);Oryzabase=7400;TENOR=Os01t0206300-00
Chr01	irgsp1_rep	CDS	5799607	5801142	.	+	0	Parent=Os01t0206300-00
Chr01	irgsp1_rep	mRNA	5807990	5808568	.	+	.	ID=Os01t0206600-01;Name=Os01t0206600-01;Locus_id=Os01g0206600;Note=Conserved hypothetical protein.;Transcript_evidence=AK240938 (DDBJ%2C Best hit);ORF_evidence=NP_001172225.1 (RefSeq);NIAS_FLcDNA=J065041P19;TENOR=Os01t0206600-01;KEGG=Os01t0206600-01
Chr01	irgsp1_rep	five_prime_UTR	5807990	5808044	.	+	.	Parent=Os01t0206600-01
Chr01	irgsp1_rep	CDS	5808045	5808111	.	+	0	Parent=Os01t0206600-01
Chr01	irgsp1_rep	CDS	5808210	5808340	.	+	2	Parent=Os01t0206600-01
Chr01	irgsp1_rep	three_prime_UTR	5808341	5808568	.	+	.	Parent=Os01t0206600-01
Chr01	irgsp1_rep	mRNA	5809141	5811560	.	+	.	ID=Os01t0206650-00;Name=Os01t0206650-00;Locus_id=Os01g0206650;Note=Hypothetical protein.;Transcript_evidence=tplb0042a18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0206650-00
Chr01	irgsp1_rep	five_prime_UTR	5809141	5809391	.	+	.	Parent=Os01t0206650-00
Chr01	irgsp1_rep	five_prime_UTR	5809513	5810544	.	+	.	Parent=Os01t0206650-00
Chr01	irgsp1_rep	CDS	5810545	5811210	.	+	0	Parent=Os01t0206650-00
Chr01	irgsp1_rep	CDS	5811363	5811392	.	+	0	Parent=Os01t0206650-00
Chr01	irgsp1_rep	three_prime_UTR	5811393	5811560	.	+	.	Parent=Os01t0206650-00
Chr01	irgsp1_rep	mRNA	5809589	5811510	.	-	.	ID=Os01t0206700-01;Name=Os01t0206700-01;Locus_id=Os01g0206700;CGSNL Gene Symbol=CIPK05;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 5;Oryzabase Gene Symbol Synonym(s)=OsCIPK05%2C CIPK5%2C OsCIPK5%2C OsSTA7;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 5;Note=Similar to Serine/threonine protein kinase (CBL-interacting protein kinase 20).;Transcript_evidence=AK065589 (DDBJ%2C Best hit);ORF_evidence=Q9LWM4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),NAF domain (IPR004041),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),NAF/FISL domain (IPR018451),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013031K24;Oryzabase=7392;TENOR=Os01t0206700-01
Chr01	irgsp1_rep	five_prime_UTR	5811184	5811510	.	-	.	Parent=Os01t0206700-01
Chr01	irgsp1_rep	CDS	5809798	5811183	.	-	0	Parent=Os01t0206700-01
Chr01	irgsp1_rep	three_prime_UTR	5809589	5809797	.	-	.	Parent=Os01t0206700-01
Chr01	irgsp1_rep	mRNA	5809595	5810655	.	-	.	ID=Os01t0206700-02;Name=Os01t0206700-02;Locus_id=Os01g0206700;CGSNL Gene Symbol=CIPK05;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 5;Oryzabase Gene Symbol Synonym(s)=OsCIPK05%2C CIPK5%2C OsCIPK5%2C OsSTA7;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 5;Note=Similar to cDNA clone:J013031K24%2C full insert sequence.;Transcript_evidence=AK069681 (DDBJ%2C Best hit);ORF_evidence=B3GLZ8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),NAF domain (IPR004041),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),NAF/FISL domain (IPR018451);NIAS_FLcDNA=J023034N02;Oryzabase=7392;Expression=AK069681;TENOR=Os01t0206700-02;KEGG=Os01t0206700-02
Chr01	irgsp1_rep	CDS	5809798	5810655	.	-	0	Parent=Os01t0206700-02
Chr01	irgsp1_rep	three_prime_UTR	5809595	5809797	.	-	.	Parent=Os01t0206700-02
Chr01	irgsp1_rep	mRNA	5809589	5811389	.	-	.	ID=Os01t0206700-03;Name=Os01t0206700-03;Locus_id=Os01g0206700;CGSNL Gene Symbol=CIPK05;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 5;Oryzabase Gene Symbol Synonym(s)=OsCIPK05%2C CIPK5%2C OsCIPK5%2C OsSTA7;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 5;Note=Similar to Serine/threonine protein kinase (CBL-interacting protein kinase 20).;Transcript_evidence=AK071552 (DDBJ%2C Best hit);ORF_evidence=B3GLZ8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),NAF domain (IPR004041),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),NAF/FISL domain (IPR018451),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023105C14;Oryzabase=7392;TENOR=Os01t0206700-03
Chr01	irgsp1_rep	five_prime_UTR	5811184	5811389	.	-	.	Parent=Os01t0206700-03
Chr01	irgsp1_rep	CDS	5809798	5811183	.	-	0	Parent=Os01t0206700-03
Chr01	irgsp1_rep	three_prime_UTR	5809589	5809797	.	-	.	Parent=Os01t0206700-03
Chr01	irgsp1_rep	mRNA	5814827	5819207	.	-	.	ID=Os01t0206800-01;Name=Os01t0206800-01;Locus_id=Os01g0206800;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK100525 (DDBJ%2C Best hit);ORF_evidence=NP_001186540.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J023100P17;Expression=AK100525;TENOR=Os01t0206800-01;KEGG=Os01t0206800-01
Chr01	irgsp1_rep	five_prime_UTR	5818734	5819207	.	-	.	Parent=Os01t0206800-01
Chr01	irgsp1_rep	CDS	5818598	5818733	.	-	0	Parent=Os01t0206800-01
Chr01	irgsp1_rep	CDS	5818368	5818500	.	-	2	Parent=Os01t0206800-01
Chr01	irgsp1_rep	CDS	5817994	5818065	.	-	1	Parent=Os01t0206800-01
Chr01	irgsp1_rep	CDS	5817729	5817872	.	-	1	Parent=Os01t0206800-01
Chr01	irgsp1_rep	CDS	5817560	5817661	.	-	1	Parent=Os01t0206800-01
Chr01	irgsp1_rep	CDS	5817362	5817444	.	-	1	Parent=Os01t0206800-01
Chr01	irgsp1_rep	CDS	5816826	5817281	.	-	2	Parent=Os01t0206800-01
Chr01	irgsp1_rep	CDS	5816299	5816489	.	-	2	Parent=Os01t0206800-01
Chr01	irgsp1_rep	CDS	5816082	5816214	.	-	0	Parent=Os01t0206800-01
Chr01	irgsp1_rep	CDS	5815847	5816004	.	-	2	Parent=Os01t0206800-01
Chr01	irgsp1_rep	CDS	5815461	5815646	.	-	0	Parent=Os01t0206800-01
Chr01	irgsp1_rep	CDS	5815087	5815344	.	-	0	Parent=Os01t0206800-01
Chr01	irgsp1_rep	three_prime_UTR	5814827	5815086	.	-	.	Parent=Os01t0206800-01
Chr01	irgsp1_rep	mRNA	5815059	5819001	.	+	.	ID=Os01t0207001-00;Name=Os01t0207001-00;Locus_id=Os01g0207001;Note=Hypothetical protein.;Transcript_evidence=tplb0058b08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0207001-00
Chr01	irgsp1_rep	five_prime_UTR	5815059	5815346	.	+	.	Parent=Os01t0207001-00
Chr01	irgsp1_rep	five_prime_UTR	5815465	5815646	.	+	.	Parent=Os01t0207001-00
Chr01	irgsp1_rep	five_prime_UTR	5815847	5815981	.	+	.	Parent=Os01t0207001-00
Chr01	irgsp1_rep	five_prime_UTR	5816058	5816206	.	+	.	Parent=Os01t0207001-00
Chr01	irgsp1_rep	five_prime_UTR	5816291	5816487	.	+	.	Parent=Os01t0207001-00
Chr01	irgsp1_rep	five_prime_UTR	5816824	5817300	.	+	.	Parent=Os01t0207001-00
Chr01	irgsp1_rep	five_prime_UTR	5817515	5817656	.	+	.	Parent=Os01t0207001-00
Chr01	irgsp1_rep	five_prime_UTR	5817723	5817876	.	+	.	Parent=Os01t0207001-00
Chr01	irgsp1_rep	five_prime_UTR	5817998	5818061	.	+	.	Parent=Os01t0207001-00
Chr01	irgsp1_rep	five_prime_UTR	5818362	5818393	.	+	.	Parent=Os01t0207001-00
Chr01	irgsp1_rep	CDS	5818394	5818499	.	+	0	Parent=Os01t0207001-00
Chr01	irgsp1_rep	CDS	5818597	5818850	.	+	2	Parent=Os01t0207001-00
Chr01	irgsp1_rep	three_prime_UTR	5818851	5819001	.	+	.	Parent=Os01t0207001-00
Chr01	irgsp1_rep	mRNA	5828556	5830828	.	-	.	ID=Os01t0207200-01;Name=Os01t0207200-01;Locus_id=Os01g0207200;Note=Similar to Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A (EC 3.5.1.52) (PNGase A) (Glycopeptide N-glycosidase) (N-glycanase) [Contains: Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A light chain (PNGase A small chain) (PNGase A subunit B)%3B Peptide-N4- (N-acetyl-beta-glucosaminyl)asparagine amidase A heavy chain (PNGase A large chain) (PNGase A subunit A)].;Transcript_evidence=AK103341 (DDBJ%2C Best hit);ORF_evidence=P81898 (UniProt);InterPro=Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A (IPR021102);NIAS_FLcDNA=J033126B18;Expression=AK103341;TENOR=Os01t0207200-01;KEGG=Os01t0207200-01 (EC:3.5.1.52)
Chr01	irgsp1_rep	five_prime_UTR	5830765	5830828	.	-	.	Parent=Os01t0207200-01
Chr01	irgsp1_rep	CDS	5828893	5830764	.	-	0	Parent=Os01t0207200-01
Chr01	irgsp1_rep	three_prime_UTR	5828556	5828892	.	-	.	Parent=Os01t0207200-01
Chr01	irgsp1_rep	mRNA	5833613	5834107	.	-	.	ID=Os01t0207300-00;Name=Os01t0207300-00;Locus_id=Os01g0207300;Note=Similar to S-adenosylmethionine synthetase 1 (EC 2.5.1.6) (Methionine adenosyltransferase 1) (AdoMet synthetase 1). Splice isoform 2.;Transcript_evidence=ab initio prediction;ORF_evidence=P93438 (UniProt);GO=Biological Process: S-adenosylmethionine biosynthetic process (GO:0006556),Molecular Function: methionine adenosyltransferase activity (GO:0004478),Molecular Function: ATP binding (GO:0005524);InterPro=S-adenosylmethionine synthetase (IPR002133),S-adenosylmethionine synthetase%2C N-terminal (IPR022628),S-adenosylmethionine synthetase%2C central domain (IPR022629),S-adenosylmethionine synthetase%2C conserved site (IPR022631),S-adenosylmethionine synthetase superfamily (IPR022636);TENOR=Os01t0207300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	5833613	5834107	.	-	0	Parent=Os01t0207300-00
Chr01	irgsp1_rep	mRNA	5837660	5838639	.	-	.	ID=Os01t0207400-01;Name=Os01t0207400-01;Locus_id=Os01g0207400;Note=Similar to peptide-N4-asparagine amidase A.;Transcript_evidence=AK109337 (DDBJ%2C Best hit);ORF_evidence=NP_001152324.1 (RefSeq);InterPro=Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A (IPR021102);NIAS_FLcDNA=006-202-D09;Expression=AK109337;TENOR=Os01t0207400-01;KEGG=Os01t0207400-01
Chr01	irgsp1_rep	CDS	5837872	5838639	.	-	0	Parent=Os01t0207400-01
Chr01	irgsp1_rep	three_prime_UTR	5837660	5837871	.	-	.	Parent=Os01t0207400-01
Chr01	irgsp1_rep	mRNA	5841728	5843767	.	+	.	ID=Os01t0207500-01;Name=Os01t0207500-01;Locus_id=Os01g0207500;Note=Hypothetical protein.;Transcript_evidence=AK073127 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033011F02;Expression=AK073127;TENOR=Os01t0207500-01;KEGG=Os01t0207500-01
Chr01	irgsp1_rep	five_prime_UTR	5841728	5843013	.	+	.	Parent=Os01t0207500-01
Chr01	irgsp1_rep	CDS	5843014	5843742	.	+	0	Parent=Os01t0207500-01
Chr01	irgsp1_rep	three_prime_UTR	5843743	5843767	.	+	.	Parent=Os01t0207500-01
Chr01	irgsp1_rep	mRNA	5841736	5843671	.	-	.	ID=Os01t0207600-00;Name=Os01t0207600-00;Locus_id=Os01g0207600;Note=Similar to peptide-N4-asparagine amidase A.;Transcript_evidence=tplb0030p14 (Wheat FLcDNA);ORF_evidence=NP_001152324.1 (RefSeq);InterPro=Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A (IPR021102);TENOR=Os01t0207600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	5843327	5843671	.	-	0	Parent=Os01t0207600-00
Chr01	irgsp1_rep	CDS	5841736	5843229	.	-	0	Parent=Os01t0207600-00
Chr01	irgsp1_rep	mRNA	5848166	5848945	.	+	.	ID=Os01t0207700-00;Name=Os01t0207700-00;Locus_id=Os01g0207700;CGSNL Gene Symbol=UMAMIT2;CGSNL Gene Name=USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 2;Oryzabase Gene Symbol Synonym(s)=OsUMAMIT2;Oryzabase Gene Name Synonym(s)=Usually Multiple Acids Move In and out Transporter 2;Note=Drug/metabolite transporter domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001042353.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);Oryzabase=21370;TENOR=Os01t0207700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	5848166	5848945	.	+	0	Parent=Os01t0207700-00
Chr01	irgsp1_rep	mRNA	5856444	5857920	.	+	.	ID=Os01t0207900-00;Name=Os01t0207900-00;Locus_id=Os01g0207900;CGSNL Gene Symbol=UMAMIT3;CGSNL Gene Name=USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 3;Oryzabase Gene Symbol Synonym(s)=OsUMAMIT3;Oryzabase Gene Name Synonym(s)=Usually Multiple Acids Move In and out Transporter 3;Note=Similar to nodulin-like protein.;Transcript_evidence=AK357640 (DDBJ);ORF_evidence=NP_001149874.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);Oryzabase=21371;TENOR=Os01t0207900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	5856444	5856466	.	+	.	Parent=Os01t0207900-00
Chr01	irgsp1_rep	CDS	5856467	5856639	.	+	0	Parent=Os01t0207900-00
Chr01	irgsp1_rep	CDS	5856753	5856815	.	+	1	Parent=Os01t0207900-00
Chr01	irgsp1_rep	CDS	5856914	5857057	.	+	1	Parent=Os01t0207900-00
Chr01	irgsp1_rep	CDS	5857170	5857920	.	+	1	Parent=Os01t0207900-00
Chr01	irgsp1_rep	mRNA	5862946	5863577	.	+	.	ID=Os01t0208000-01;Name=Os01t0208000-01;Locus_id=Os01g0208000;CGSNL Gene Symbol=UMAMIT4;CGSNL Gene Name=USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 4;Oryzabase Gene Symbol Synonym(s)=OsUMAMIT4;Oryzabase Gene Name Synonym(s)=Usually Multiple Acids Move In and out Transporter 4;Note=Protein of unknown function DUF6%2C transmembrane domain containing protein.;Transcript_evidence=AK108020 (DDBJ%2C Best hit);ORF_evidence=NP_001149874.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=002-136-A02;Oryzabase=21372;Expression=AK108020;TENOR=Os01t0208000-01;KEGG=Os01t0208000-01
Chr01	irgsp1_rep	CDS	5862946	5863443	.	+	0	Parent=Os01t0208000-01
Chr01	irgsp1_rep	three_prime_UTR	5863444	5863577	.	+	.	Parent=Os01t0208000-01
Chr01	irgsp1_rep	mRNA	5875794	5877849	.	-	.	ID=Os01t0208400-01;Name=Os01t0208400-01;Locus_id=Os01g0208400;Note=Similar to peptide-N4-asparagine amidase A.;Transcript_evidence=AK105750 (DDBJ%2C Best hit);ORF_evidence=NP_001152324.1 (RefSeq);InterPro=Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A (IPR021102);NIAS_FLcDNA=001-202-B10;Expression=AK105750;TENOR=Os01t0208400-01;KEGG=Os01t0208400-01
Chr01	irgsp1_rep	five_prime_UTR	5877804	5877849	.	-	.	Parent=Os01t0208400-01
Chr01	irgsp1_rep	CDS	5875953	5877803	.	-	0	Parent=Os01t0208400-01
Chr01	irgsp1_rep	three_prime_UTR	5875794	5875952	.	-	.	Parent=Os01t0208400-01
Chr01	irgsp1_rep	mRNA	5890605	5898131	.	+	.	ID=Os01t0208600-01;Name=Os01t0208600-01;Locus_id=Os01g0208600;RAP-DB Gene Symbol Synonym(s)=ES1%2C TUT1%2C OsSCAR1%2C SCAR1%2CTUT1/OsSCAR1;RAP-DB Gene Name Synonym(s)=EARLY SENESCENCE 1%2C early senescence 1%2C SCAR-like protein 2%2C suppressor of cAMP receptor 1;CGSNL Gene Symbol=ES1;CGSNL Gene Name=EARLY SENESCENCE 1;Oryzabase Gene Symbol Synonym(s)=TUT1%2C OsSCAR1%2C SCAR1%2C TUT1/OsSCAR1%2C OsSCAR2%2C SCAR2;Oryzabase Gene Name Synonym(s)=early senescence 1%2C SCAR-like protein 2%2C suppressor of cAMP receptor 1;Note=SCAR-like protein 2%2C Component of the suppressor of cAMP receptor/Wiskott-Aldrich syndrome protein family verprolin-homologous (SCAR/WAVE) complex%2C Actin organization%2C Panicle development%2C Regulation of water loss;Transcript_evidence=AK120865;ORF_evidence=Q5QNA6;GO=Biological Process: actin cytoskeleton organization (GO:0030036),Molecular Function: actin binding (GO:0003779),Cellular Component: cytoskeleton (GO:0005856);InterPro=SCAR/WAVE family (IPR028288),WH2 domain (IPR003124);NIAS_FLcDNA=J023025D04;Manual Curation=October 8%2C 2015;Literature_PMID=26243619,26243616;Oryzabase=19852;Expression=AK120865;TENOR=Os01t0208600-01;KEGG=Os01t0208600-01
Chr01	irgsp1_rep	five_prime_UTR	5890605	5890924	.	+	.	Parent=Os01t0208600-01
Chr01	irgsp1_rep	CDS	5890925	5891136	.	+	0	Parent=Os01t0208600-01
Chr01	irgsp1_rep	CDS	5892110	5892273	.	+	1	Parent=Os01t0208600-01
Chr01	irgsp1_rep	CDS	5892755	5892878	.	+	2	Parent=Os01t0208600-01
Chr01	irgsp1_rep	CDS	5892941	5893073	.	+	1	Parent=Os01t0208600-01
Chr01	irgsp1_rep	CDS	5893629	5893732	.	+	0	Parent=Os01t0208600-01
Chr01	irgsp1_rep	CDS	5893867	5896780	.	+	1	Parent=Os01t0208600-01
Chr01	irgsp1_rep	CDS	5896876	5896965	.	+	0	Parent=Os01t0208600-01
Chr01	irgsp1_rep	CDS	5897251	5897355	.	+	0	Parent=Os01t0208600-01
Chr01	irgsp1_rep	CDS	5897633	5897740	.	+	0	Parent=Os01t0208600-01
Chr01	irgsp1_rep	CDS	5897826	5897876	.	+	0	Parent=Os01t0208600-01
Chr01	irgsp1_rep	three_prime_UTR	5897877	5898131	.	+	.	Parent=Os01t0208600-01
Chr01	irgsp1_rep	mRNA	5894496	5898181	.	+	.	ID=Os01t0208600-02;Name=Os01t0208600-02;Locus_id=Os01g0208600;CGSNL Gene Symbol=ES1;CGSNL Gene Name=EARLY SENESCENCE 1;Oryzabase Gene Symbol Synonym(s)=TUT1%2C OsSCAR1%2C SCAR1%2C TUT1/OsSCAR1%2C OsSCAR2%2C SCAR2;Oryzabase Gene Name Synonym(s)=early senescence 1%2C SCAR-like protein 2%2C suppressor of cAMP receptor 1;Note=Actin-binding WH2 domain containing protein.;Transcript_evidence=AK067713 (DDBJ%2C Best hit);ORF_evidence=A2ZQJ1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Actin-binding WH2 (IPR003124);NIAS_FLcDNA=J013119F18;Oryzabase=19852;TENOR=Os01t0208600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	5894496	5894497	.	+	.	Parent=Os01t0208600-02
Chr01	irgsp1_rep	CDS	5894498	5896780	.	+	0	Parent=Os01t0208600-02
Chr01	irgsp1_rep	CDS	5896876	5896965	.	+	0	Parent=Os01t0208600-02
Chr01	irgsp1_rep	CDS	5897251	5897355	.	+	0	Parent=Os01t0208600-02
Chr01	irgsp1_rep	CDS	5897633	5897740	.	+	0	Parent=Os01t0208600-02
Chr01	irgsp1_rep	CDS	5897826	5897876	.	+	0	Parent=Os01t0208600-02
Chr01	irgsp1_rep	three_prime_UTR	5897877	5898181	.	+	.	Parent=Os01t0208600-02
Chr01	irgsp1_rep	mRNA	5896933	5898224	.	+	.	ID=Os01t0208600-03;Name=Os01t0208600-03;Locus_id=Os01g0208600;CGSNL Gene Symbol=ES1;CGSNL Gene Name=EARLY SENESCENCE 1;Oryzabase Gene Symbol Synonym(s)=TUT1%2C OsSCAR1%2C SCAR1%2C TUT1/OsSCAR1%2C OsSCAR2%2C SCAR2;Oryzabase Gene Name Synonym(s)=early senescence 1%2C SCAR-like protein 2%2C suppressor of cAMP receptor 1;Note=Actin-binding WH2 domain containing protein.;Transcript_evidence=AK104676 (DDBJ%2C Best hit);ORF_evidence=Q7XXS7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Actin-binding WH2 (IPR003124);NIAS_FLcDNA=001-032-B05;Oryzabase=19852;Expression=AK104676;TENOR=Os01t0208600-03;KEGG=Os01t0208600-03
Chr01	irgsp1_rep	CDS	5896933	5896965	.	+	0	Parent=Os01t0208600-03
Chr01	irgsp1_rep	CDS	5897251	5897355	.	+	0	Parent=Os01t0208600-03
Chr01	irgsp1_rep	CDS	5897633	5897740	.	+	0	Parent=Os01t0208600-03
Chr01	irgsp1_rep	CDS	5897826	5897876	.	+	0	Parent=Os01t0208600-03
Chr01	irgsp1_rep	three_prime_UTR	5897877	5898224	.	+	.	Parent=Os01t0208600-03
Chr01	irgsp1_rep	mRNA	5899561	5909560	.	+	.	ID=Os01t0208700-01;Name=Os01t0208700-01;Locus_id=Os01g0208700;RAP-DB Gene Symbol Synonym(s)=Osppc4;RAP-DB Gene Name Synonym(s)=Phosphoenolpyruvate carboxylase 4;Oryzabase Gene Symbol Synonym(s)=PEPC-2%2C Osppc4%2C ppc4;Oryzabase Gene Name Synonym(s)=PEP carboxylase 2%2C Phosphoenolpyruvate carboxylase 2%2C phosphoenolpyruvate carboxylase 4%2C PEPCase 4;Note=Phosphoenolpyruvate carboxylase%2C Ammonium assimilation;Transcript_evidence=AK066635;ORF_evidence=Q5QNA5;GO=Biological Process: tricarboxylic acid cycle (GO:0006099),Biological Process: carbon fixation (GO:0015977),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphoenolpyruvate carboxylase activity (GO:0008964);InterPro=Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily (IPR015813),Phosphoenolpyruvate carboxylase (IPR021135),Phosphoenolpyruvate carboxylase%2C bacterial/plant-type (IPR022805),Phosphoenolpyruvate carboxylase%2C Lys active site (IPR018129),Phosphoenolpyruvate carboxylase%2C His active site (IPR033129);NIAS_FLcDNA=J013071A07;Manual Curation=October 6%2C 2020;Literature_PMID=25505033,20194759;Oryzabase=11420;Expression=AK066635;TENOR=Os01t0208700-01;KEGG=Os01t0208700-01 (EC:4.1.1.31);Subcellular location=chloroplast (GO:0009507)
Chr01	irgsp1_rep	five_prime_UTR	5899561	5899718	.	+	.	Parent=Os01t0208700-01
Chr01	irgsp1_rep	CDS	5899719	5900021	.	+	0	Parent=Os01t0208700-01
Chr01	irgsp1_rep	CDS	5900124	5900518	.	+	0	Parent=Os01t0208700-01
Chr01	irgsp1_rep	CDS	5900619	5900703	.	+	1	Parent=Os01t0208700-01
Chr01	irgsp1_rep	CDS	5900810	5901032	.	+	0	Parent=Os01t0208700-01
Chr01	irgsp1_rep	CDS	5901131	5901234	.	+	2	Parent=Os01t0208700-01
Chr01	irgsp1_rep	CDS	5901531	5901621	.	+	0	Parent=Os01t0208700-01
Chr01	irgsp1_rep	CDS	5906914	5907068	.	+	2	Parent=Os01t0208700-01
Chr01	irgsp1_rep	CDS	5907241	5908632	.	+	0	Parent=Os01t0208700-01
Chr01	irgsp1_rep	CDS	5908973	5909269	.	+	0	Parent=Os01t0208700-01
Chr01	irgsp1_rep	three_prime_UTR	5909270	5909560	.	+	.	Parent=Os01t0208700-01
Chr01	irgsp1_rep	mRNA	5907081	5908615	.	-	.	ID=Os01t0208800-01;Name=Os01t0208800-01;Locus_id=Os01g0208800;Note=Similar to Phosphoenolpyruvate carboxylase (Fragment).;Transcript_evidence=AK109734 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-146-C06;Expression=AK109734;TENOR=Os01t0208800-01;KEGG=Os01t0208800-01
Chr01	irgsp1_rep	five_prime_UTR	5908533	5908615	.	-	.	Parent=Os01t0208800-01
Chr01	irgsp1_rep	CDS	5907720	5908532	.	-	0	Parent=Os01t0208800-01
Chr01	irgsp1_rep	three_prime_UTR	5907081	5907719	.	-	.	Parent=Os01t0208800-01
Chr01	irgsp1_rep	mRNA	5911506	5916779	.	+	.	ID=Os01t0209000-01;Name=Os01t0209000-01;Locus_id=Os01g0209000;Note=Alg9-like mannosyltransferase family protein.;Transcript_evidence=AK103701 (DDBJ%2C Best hit);ORF_evidence=B6T9G4 (UniProt);GO=Biological Process: GPI anchor biosynthetic process (GO:0006506),Cellular Component: intrinsic to endoplasmic reticulum membrane (GO:0031227),Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=GPI mannosyltransferase (IPR005599);NIAS_FLcDNA=J033136L19;Expression=AK103701;TENOR=Os01t0209000-01;KEGG=Os01t0209000-01 (EC:2.4.1.-)
Chr01	irgsp1_rep	five_prime_UTR	5911506	5911686	.	+	.	Parent=Os01t0209000-01
Chr01	irgsp1_rep	CDS	5911687	5911961	.	+	0	Parent=Os01t0209000-01
Chr01	irgsp1_rep	CDS	5913549	5913636	.	+	1	Parent=Os01t0209000-01
Chr01	irgsp1_rep	CDS	5913750	5913909	.	+	0	Parent=Os01t0209000-01
Chr01	irgsp1_rep	CDS	5914017	5914237	.	+	2	Parent=Os01t0209000-01
Chr01	irgsp1_rep	CDS	5914315	5914610	.	+	0	Parent=Os01t0209000-01
Chr01	irgsp1_rep	CDS	5915176	5915287	.	+	1	Parent=Os01t0209000-01
Chr01	irgsp1_rep	CDS	5915376	5915514	.	+	0	Parent=Os01t0209000-01
Chr01	irgsp1_rep	CDS	5915850	5916046	.	+	2	Parent=Os01t0209000-01
Chr01	irgsp1_rep	CDS	5916134	5916223	.	+	0	Parent=Os01t0209000-01
Chr01	irgsp1_rep	CDS	5916312	5916452	.	+	0	Parent=Os01t0209000-01
Chr01	irgsp1_rep	three_prime_UTR	5916453	5916779	.	+	.	Parent=Os01t0209000-01
Chr01	irgsp1_rep	mRNA	5911625	5916627	.	+	.	ID=Os01t0209000-02;Name=Os01t0209000-02;Locus_id=Os01g0209000;Note=Alg9-like mannosyltransferase family protein.;Transcript_evidence=AK243035 (DDBJ%2C Best hit);ORF_evidence=B6T9G4 (UniProt);GO=Biological Process: GPI anchor biosynthetic process (GO:0006506),Cellular Component: intrinsic to endoplasmic reticulum membrane (GO:0031227),Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=GPI mannosyltransferase (IPR005599);NIAS_FLcDNA=J100007D10;TENOR=Os01t0209000-02;KEGG=Os01t0209000-02 (EC:2.4.1.-)
Chr01	irgsp1_rep	five_prime_UTR	5911625	5911686	.	+	.	Parent=Os01t0209000-02
Chr01	irgsp1_rep	CDS	5911687	5911961	.	+	0	Parent=Os01t0209000-02
Chr01	irgsp1_rep	CDS	5913549	5913636	.	+	1	Parent=Os01t0209000-02
Chr01	irgsp1_rep	CDS	5913750	5913909	.	+	0	Parent=Os01t0209000-02
Chr01	irgsp1_rep	CDS	5914017	5914237	.	+	2	Parent=Os01t0209000-02
Chr01	irgsp1_rep	CDS	5914315	5914610	.	+	0	Parent=Os01t0209000-02
Chr01	irgsp1_rep	CDS	5915176	5915287	.	+	1	Parent=Os01t0209000-02
Chr01	irgsp1_rep	CDS	5915376	5915514	.	+	0	Parent=Os01t0209000-02
Chr01	irgsp1_rep	CDS	5915850	5916046	.	+	2	Parent=Os01t0209000-02
Chr01	irgsp1_rep	CDS	5916134	5916223	.	+	0	Parent=Os01t0209000-02
Chr01	irgsp1_rep	CDS	5916312	5916452	.	+	0	Parent=Os01t0209000-02
Chr01	irgsp1_rep	three_prime_UTR	5916453	5916627	.	+	.	Parent=Os01t0209000-02
Chr01	irgsp1_rep	mRNA	5920696	5921382	.	-	.	ID=Os01t0209150-01;Name=Os01t0209150-01;Locus_id=Os01g0209150;Note=Hypothetical gene.;Transcript_evidence=AK240783 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J053082J22;TENOR=Os01t0209150-01;KEGG=Os01t0209150-01
Chr01	irgsp1_rep	five_prime_UTR	5921009	5921382	.	-	.	Parent=Os01t0209150-01
Chr01	irgsp1_rep	CDS	5920787	5921008	.	-	0	Parent=Os01t0209150-01
Chr01	irgsp1_rep	three_prime_UTR	5920696	5920786	.	-	.	Parent=Os01t0209150-01
Chr01	irgsp1_rep	mRNA	5921759	5934109	.	+	.	ID=Os01t0209200-01;Name=Os01t0209200-01;Locus_id=Os01g0209200;CGSNL Gene Symbol=GF14G;CGSNL Gene Name=G-BOX FACTOR 14-3-3G PROTEIN;Oryzabase Gene Symbol Synonym(s)=GF14g%2C OsGF14g%2C 14-3-3g;Oryzabase Gene Name Synonym(s)=G-box factor 14-3-3g protein;Note=Similar to 14-3-3 protein 7.;Transcript_evidence=AK103145 (DDBJ%2C Best hit);ORF_evidence=Q5QNB8 (UniProt);GO=Molecular Function: protein domain specific binding (GO:0019904);InterPro=14-3-3 protein (IPR000308),14-3-3 domain (IPR023410);NIAS_FLcDNA=J033120H17;Oryzabase=11413;Expression=AK103145;TENOR=Os01t0209200-01;KEGG=Os01t0209200-01
Chr01	irgsp1_rep	five_prime_UTR	5921759	5921890	.	+	.	Parent=Os01t0209200-01
Chr01	irgsp1_rep	CDS	5921891	5921954	.	+	0	Parent=Os01t0209200-01
Chr01	irgsp1_rep	CDS	5932029	5932335	.	+	2	Parent=Os01t0209200-01
Chr01	irgsp1_rep	CDS	5932414	5932499	.	+	1	Parent=Os01t0209200-01
Chr01	irgsp1_rep	CDS	5933018	5933129	.	+	2	Parent=Os01t0209200-01
Chr01	irgsp1_rep	CDS	5933212	5933360	.	+	1	Parent=Os01t0209200-01
Chr01	irgsp1_rep	CDS	5933686	5933738	.	+	2	Parent=Os01t0209200-01
Chr01	irgsp1_rep	CDS	5933833	5933835	.	+	0	Parent=Os01t0209200-01
Chr01	irgsp1_rep	three_prime_UTR	5933836	5934109	.	+	.	Parent=Os01t0209200-01
Chr01	irgsp1_rep	mRNA	5932028	5933355	.	-	.	ID=Os01t0209300-00;Name=Os01t0209300-00;Locus_id=Os01g0209300;Note=Non-protein coding transcript.;Transcript_evidence=BT017754 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0209300-00
Chr01	irgsp1_rep	exon	5933223	5933355	.	-	.	Parent=Os01t0209300-00
Chr01	irgsp1_rep	exon	5933034	5933140	.	-	.	Parent=Os01t0209300-00
Chr01	irgsp1_rep	exon	5932427	5932511	.	-	.	Parent=Os01t0209300-00
Chr01	irgsp1_rep	exon	5932028	5932351	.	-	.	Parent=Os01t0209300-00
Chr01	irgsp1_rep	mRNA	5934586	5939516	.	-	.	ID=Os01t0209400-01;Name=Os01t0209400-01;Locus_id=Os01g0209400;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK103702 (DDBJ%2C Best hit);ORF_evidence=B6TAN7 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Ataxin-2%2C C-terminal (IPR009818),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033136L22;Expression=AK103702;TENOR=Os01t0209400-01;KEGG=Os01t0209400-01
Chr01	irgsp1_rep	five_prime_UTR	5939248	5939516	.	-	.	Parent=Os01t0209400-01
Chr01	irgsp1_rep	CDS	5938963	5939247	.	-	0	Parent=Os01t0209400-01
Chr01	irgsp1_rep	CDS	5938020	5938133	.	-	0	Parent=Os01t0209400-01
Chr01	irgsp1_rep	CDS	5937895	5937939	.	-	0	Parent=Os01t0209400-01
Chr01	irgsp1_rep	CDS	5937082	5937154	.	-	0	Parent=Os01t0209400-01
Chr01	irgsp1_rep	CDS	5936884	5936996	.	-	2	Parent=Os01t0209400-01
Chr01	irgsp1_rep	CDS	5936721	5936780	.	-	0	Parent=Os01t0209400-01
Chr01	irgsp1_rep	CDS	5936536	5936583	.	-	0	Parent=Os01t0209400-01
Chr01	irgsp1_rep	CDS	5935285	5935353	.	-	0	Parent=Os01t0209400-01
Chr01	irgsp1_rep	CDS	5935063	5935125	.	-	0	Parent=Os01t0209400-01
Chr01	irgsp1_rep	CDS	5934923	5934979	.	-	0	Parent=Os01t0209400-01
Chr01	irgsp1_rep	three_prime_UTR	5934586	5934922	.	-	.	Parent=Os01t0209400-01
Chr01	irgsp1_rep	mRNA	5945633	5954315	.	-	.	ID=Os01t0209500-01;Name=Os01t0209500-01;Locus_id=Os01g0209500;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=AK072686 (DDBJ%2C Best hit);ORF_evidence=B9EU12 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J023139J22;TENOR=Os01t0209500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	5954208	5954315	.	-	.	Parent=Os01t0209500-01
Chr01	irgsp1_rep	five_prime_UTR	5952227	5952260	.	-	.	Parent=Os01t0209500-01
Chr01	irgsp1_rep	CDS	5952134	5952226	.	-	0	Parent=Os01t0209500-01
Chr01	irgsp1_rep	CDS	5950928	5951056	.	-	0	Parent=Os01t0209500-01
Chr01	irgsp1_rep	CDS	5950672	5950737	.	-	0	Parent=Os01t0209500-01
Chr01	irgsp1_rep	three_prime_UTR	5950562	5950671	.	-	.	Parent=Os01t0209500-01
Chr01	irgsp1_rep	three_prime_UTR	5950356	5950456	.	-	.	Parent=Os01t0209500-01
Chr01	irgsp1_rep	three_prime_UTR	5949544	5949627	.	-	.	Parent=Os01t0209500-01
Chr01	irgsp1_rep	three_prime_UTR	5949386	5949434	.	-	.	Parent=Os01t0209500-01
Chr01	irgsp1_rep	three_prime_UTR	5949209	5949300	.	-	.	Parent=Os01t0209500-01
Chr01	irgsp1_rep	three_prime_UTR	5947768	5947882	.	-	.	Parent=Os01t0209500-01
Chr01	irgsp1_rep	three_prime_UTR	5945633	5947613	.	-	.	Parent=Os01t0209500-01
Chr01	irgsp1_rep	mRNA	5945746	5946990	.	+	.	ID=Os01t0209566-00;Name=Os01t0209566-00;Locus_id=Os01g0209566;Note=Hypothetical protein.;Transcript_evidence=BT016846 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0209566-00
Chr01	irgsp1_rep	five_prime_UTR	5945746	5945752	.	+	.	Parent=Os01t0209566-00
Chr01	irgsp1_rep	CDS	5945753	5946073	.	+	0	Parent=Os01t0209566-00
Chr01	irgsp1_rep	three_prime_UTR	5946074	5946098	.	+	.	Parent=Os01t0209566-00
Chr01	irgsp1_rep	three_prime_UTR	5946158	5946990	.	+	.	Parent=Os01t0209566-00
Chr01	irgsp1_rep	mRNA	5968819	5972489	.	-	.	ID=Os01t0209700-01;Name=Os01t0209700-01;Locus_id=Os01g0209700;CGSNL Gene Symbol=GA2OX7;CGSNL Gene Name=GIBBERELLIN 2-OXIDASE 7;Oryzabase Gene Symbol Synonym(s)=OsGA2ox7;Oryzabase Gene Name Synonym(s)=GA 2-oxidase 7;Note=Similar to GA 2-oxidase 5.;Transcript_evidence=AK108802 (DDBJ%2C Best hit);ORF_evidence=B3STR3 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=002-151-C10;Oryzabase=9083;Expression=AK108802;TENOR=Os01t0209700-01;KEGG=Os01t0209700-01
Chr01	irgsp1_rep	five_prime_UTR	5972385	5972489	.	-	.	Parent=Os01t0209700-01
Chr01	irgsp1_rep	CDS	5971975	5972384	.	-	0	Parent=Os01t0209700-01
Chr01	irgsp1_rep	CDS	5969799	5970156	.	-	1	Parent=Os01t0209700-01
Chr01	irgsp1_rep	CDS	5969042	5969281	.	-	0	Parent=Os01t0209700-01
Chr01	irgsp1_rep	three_prime_UTR	5968819	5969041	.	-	.	Parent=Os01t0209700-01
Chr01	irgsp1_rep	mRNA	5969790	5972419	.	+	.	ID=Os01t0209750-00;Name=Os01t0209750-00;Locus_id=Os01g0209750;Note=Hypothetical protein.;Transcript_evidence=BT038748 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0209750-00
Chr01	irgsp1_rep	five_prime_UTR	5969790	5970203	.	+	.	Parent=Os01t0209750-00
Chr01	irgsp1_rep	five_prime_UTR	5971923	5972017	.	+	.	Parent=Os01t0209750-00
Chr01	irgsp1_rep	CDS	5972018	5972419	.	+	0	Parent=Os01t0209750-00
Chr01	irgsp1_rep	mRNA	5983713	5985875	.	-	.	ID=Os01t0209800-01;Name=Os01t0209800-01;Locus_id=Os01g0209800;Oryzabase Gene Symbol Synonym(s)=OsCAT1;Oryzabase Gene Name Synonym(s)=cationic amino acid transporter 1;Note=Similar to Cationic amino acid transporter (Fragment).;Transcript_evidence=AK061588 (DDBJ%2C Best hit);ORF_evidence=XP_002303714.1 (RefSeq);GO=Biological Process: amino acid transmembrane transport (GO:0003333),Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: amino acid transmembrane transporter activity (GO:0015171);InterPro=Amino acid/polyamine transporter I (IPR002293),Amino acid permease domain (IPR004841),Cationic amino acid transporter (IPR015606);NIAS_FLcDNA=001-021-B08;Oryzabase=18535;Expression=AK061588;TENOR=Os01t0209800-01;KEGG=Os01t0209800-01
Chr01	irgsp1_rep	five_prime_UTR	5985773	5985875	.	-	.	Parent=Os01t0209800-01
Chr01	irgsp1_rep	CDS	5984424	5985772	.	-	0	Parent=Os01t0209800-01
Chr01	irgsp1_rep	CDS	5983826	5984327	.	-	1	Parent=Os01t0209800-01
Chr01	irgsp1_rep	three_prime_UTR	5983713	5983825	.	-	.	Parent=Os01t0209800-01
Chr01	irgsp1_rep	mRNA	5983626	5985833	.	-	.	ID=Os01t0209800-02;Name=Os01t0209800-02;Locus_id=Os01g0209800;Oryzabase Gene Symbol Synonym(s)=OsCAT1;Oryzabase Gene Name Synonym(s)=cationic amino acid transporter 1;Note=Similar to Cationic amino acid transporter (Fragment).;Transcript_evidence=AK099094 (DDBJ%2C Best hit);ORF_evidence=XP_002303714.1 (RefSeq);GO=Biological Process: amino acid transmembrane transport (GO:0003333),Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: amino acid transmembrane transporter activity (GO:0015171);InterPro=Amino acid/polyamine transporter I (IPR002293),Amino acid permease domain (IPR004841),Cationic amino acid transporter (IPR015606);NIAS_FLcDNA=J023019B18;Oryzabase=18535;Expression=AK099094;TENOR=Os01t0209800-02;KEGG=Os01t0209800-02
Chr01	irgsp1_rep	five_prime_UTR	5985773	5985833	.	-	.	Parent=Os01t0209800-02
Chr01	irgsp1_rep	CDS	5984424	5985772	.	-	0	Parent=Os01t0209800-02
Chr01	irgsp1_rep	CDS	5983826	5984327	.	-	1	Parent=Os01t0209800-02
Chr01	irgsp1_rep	three_prime_UTR	5983626	5983825	.	-	.	Parent=Os01t0209800-02
Chr01	irgsp1_rep	mRNA	5983849	5985803	.	+	.	ID=Os01t0209901-00;Name=Os01t0209901-00;Locus_id=Os01g0209901;Note=Hypothetical protein.;Transcript_evidence=tplb0044b08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0209901-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	5983849	5984003	.	+	.	Parent=Os01t0209901-00
Chr01	irgsp1_rep	CDS	5984004	5984320	.	+	0	Parent=Os01t0209901-00
Chr01	irgsp1_rep	CDS	5984413	5985803	.	+	1	Parent=Os01t0209901-00
Chr01	irgsp1_rep	mRNA	6000333	6000920	.	-	.	ID=Os01t0210200-00;Name=Os01t0210200-00;Locus_id=Os01g0210200;CGSNL Gene Symbol=MSL01;CGSNL Gene Name=MYB/SANT-LIKE 1;Oryzabase Gene Symbol Synonym(s)=OsMSL01%2C MSL1;Oryzabase Gene Name Synonym(s)=Myb/SANT-LIKE 1;Note=Similar to Myb-like DNA-binding domain containing protein%2C expressed.;Transcript_evidence=AF099372 (DDBJ);ORF_evidence=Q10KW0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),MYB-like (IPR017877),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);Oryzabase=22935;TENOR=Os01t0210200-00
Chr01	irgsp1_rep	CDS	6000333	6000920	.	-	0	Parent=Os01t0210200-00
Chr01	irgsp1_rep	mRNA	6003524	6004869	.	+	.	ID=Os01t0210300-01;Name=Os01t0210300-01;Locus_id=Os01g0210300;Note=Conserved hypothetical protein.;Transcript_evidence=AK106937 (DDBJ%2C Best hit);ORF_evidence=Q5QNG2 (UniProt);NIAS_FLcDNA=002-119-C11;Expression=AK106937;TENOR=Os01t0210300-01;KEGG=Os01t0210300-01
Chr01	irgsp1_rep	five_prime_UTR	6003524	6003556	.	+	.	Parent=Os01t0210300-01
Chr01	irgsp1_rep	CDS	6003557	6004069	.	+	0	Parent=Os01t0210300-01
Chr01	irgsp1_rep	CDS	6004183	6004299	.	+	0	Parent=Os01t0210300-01
Chr01	irgsp1_rep	CDS	6004447	6004527	.	+	0	Parent=Os01t0210300-01
Chr01	irgsp1_rep	CDS	6004607	6004765	.	+	0	Parent=Os01t0210300-01
Chr01	irgsp1_rep	three_prime_UTR	6004766	6004869	.	+	.	Parent=Os01t0210300-01
Chr01	irgsp1_rep	mRNA	6005040	6007163	.	-	.	ID=Os01t0210400-00;Name=Os01t0210400-00;Locus_id=Os01g0210400;Note=Protein of unknown function DUF616 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001042367.1 (RefSeq);InterPro=Protein of unknown function DUF616 (IPR006852);TENOR=Os01t0210400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	6006845	6007163	.	-	0	Parent=Os01t0210400-00
Chr01	irgsp1_rep	CDS	6006391	6006657	.	-	2	Parent=Os01t0210400-00
Chr01	irgsp1_rep	CDS	6005634	6006215	.	-	2	Parent=Os01t0210400-00
Chr01	irgsp1_rep	CDS	6005040	6005371	.	-	2	Parent=Os01t0210400-00
Chr01	irgsp1_rep	mRNA	6007921	6009027	.	-	.	ID=Os01t0210500-01;Name=Os01t0210500-01;Locus_id=Os01g0210500;Note=Similar to SOUL-like protein.;Transcript_evidence=AK071702 (DDBJ%2C Best hit),AK068329 (DDBJ%2C Best hit),AK104322 (DDBJ%2C Best hit);ORF_evidence=NP_001148314.1 (RefSeq);InterPro=SOUL haem-binding protein (IPR006917),Regulatory factor%2C effector%2C bacterial (IPR011256);NIAS_FLcDNA=J023108G02,J013136I24,001-027-A02;TENOR=Os01t0210500-01
Chr01	irgsp1_rep	five_prime_UTR	6008951	6009027	.	-	.	Parent=Os01t0210500-01
Chr01	irgsp1_rep	CDS	6008730	6008950	.	-	0	Parent=Os01t0210500-01
Chr01	irgsp1_rep	CDS	6008139	6008574	.	-	1	Parent=Os01t0210500-01
Chr01	irgsp1_rep	three_prime_UTR	6007921	6008138	.	-	.	Parent=Os01t0210500-01
Chr01	irgsp1_rep	mRNA	6008725	6009183	.	+	.	ID=Os01t0210550-00;Name=Os01t0210550-00;Locus_id=Os01g0210550;Note=Hypothetical gene.;Transcript_evidence=EU943029 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0210550-00;KEGG=Os01t0210550-00
Chr01	irgsp1_rep	five_prime_UTR	6008725	6008765	.	+	.	Parent=Os01t0210550-00
Chr01	irgsp1_rep	CDS	6008766	6009053	.	+	0	Parent=Os01t0210550-00
Chr01	irgsp1_rep	three_prime_UTR	6009054	6009183	.	+	.	Parent=Os01t0210550-00
Chr01	irgsp1_rep	mRNA	6010862	6011818	.	-	.	ID=Os01t0210600-02;Name=Os01t0210600-02;Locus_id=Os01g0210600;Note=Protein of unknown function DUF538 family protein.;Transcript_evidence=AK060099 (DDBJ%2C Best hit),AK119774 (DDBJ%2C Best hit);ORF_evidence=A2WLZ1 (UniProt);NIAS_FLcDNA=006-307-H01,002-172-F06;Expression=AK060099;TENOR=Os01t0210600-02;KEGG=Os01t0210600-02
Chr01	irgsp1_rep	five_prime_UTR	6011729	6011818	.	-	.	Parent=Os01t0210600-02
Chr01	irgsp1_rep	CDS	6011225	6011728	.	-	0	Parent=Os01t0210600-02
Chr01	irgsp1_rep	three_prime_UTR	6010862	6011224	.	-	.	Parent=Os01t0210600-02
Chr01	irgsp1_rep	mRNA	6017742	6022122	.	-	.	ID=Os01t0210700-01;Name=Os01t0210700-01;Locus_id=Os01g0210700;CGSNL Gene Symbol=KAT2;CGSNL Gene Name=SHAKER POTASSIUM CHANNEL 2;Oryzabase Gene Symbol Synonym(s)=OsKAT2;Oryzabase Gene Name Synonym(s)=shaker potassium channel OsKAT2;Note=Similar to Potassium channel (Fragment).;Transcript_evidence=AK065938 (DDBJ%2C Best hit);ORF_evidence=NP_001105161.1 (RefSeq);GO=Biological Process: ion transport (GO:0006811),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: ion channel activity (GO:0005216);InterPro=Cyclic nucleotide-binding domain (IPR000595),Ion transport (IPR005821),RmlC-like jelly roll fold (IPR014710),Cyclic nucleotide-binding-like (IPR018490),Potassium channel%2C plant-type (IPR021789);NIAS_FLcDNA=J013045B04;Oryzabase=10367;Expression=AK065938;TENOR=Os01t0210700-01;KEGG=Os01t0210700-01
Chr01	irgsp1_rep	five_prime_UTR	6022001	6022122	.	-	.	Parent=Os01t0210700-01
Chr01	irgsp1_rep	CDS	6021885	6022000	.	-	0	Parent=Os01t0210700-01
Chr01	irgsp1_rep	CDS	6021577	6021792	.	-	1	Parent=Os01t0210700-01
Chr01	irgsp1_rep	CDS	6021333	6021389	.	-	1	Parent=Os01t0210700-01
Chr01	irgsp1_rep	CDS	6021197	6021254	.	-	1	Parent=Os01t0210700-01
Chr01	irgsp1_rep	CDS	6020747	6021064	.	-	0	Parent=Os01t0210700-01
Chr01	irgsp1_rep	CDS	6020042	6020281	.	-	0	Parent=Os01t0210700-01
Chr01	irgsp1_rep	CDS	6019827	6019925	.	-	0	Parent=Os01t0210700-01
Chr01	irgsp1_rep	CDS	6019703	6019735	.	-	0	Parent=Os01t0210700-01
Chr01	irgsp1_rep	CDS	6019432	6019617	.	-	0	Parent=Os01t0210700-01
Chr01	irgsp1_rep	CDS	6019069	6019339	.	-	0	Parent=Os01t0210700-01
Chr01	irgsp1_rep	CDS	6018131	6018243	.	-	2	Parent=Os01t0210700-01
Chr01	irgsp1_rep	three_prime_UTR	6017742	6018130	.	-	.	Parent=Os01t0210700-01
Chr01	irgsp1_rep	mRNA	6017745	6022156	.	-	.	ID=Os01t0210700-02;Name=Os01t0210700-02;Locus_id=Os01g0210700;RAP-DB Gene Symbol Synonym(s)=KAT2%2C OsKAT2;RAP-DB Gene Name Synonym(s)=SHAKER POTASSIUM CHANNEL 2%2C shaker potassium channel OsKAT2;CGSNL Gene Symbol=KAT2;CGSNL Gene Name=SHAKER POTASSIUM CHANNEL 2;Oryzabase Gene Symbol Synonym(s)=OsKAT2;Oryzabase Gene Name Synonym(s)=shaker potassium channel OsKAT2;Note=Inward rectifying shaker-like potassium channel;Transcript_evidence=KJ010541 (cds),XM_015758606.1.;ORF_evidence=Q5QNI1;GO=Biological Process: ion transport (GO:0006811),Biological Process: potassium ion transport (GO:0006813),Biological Process: transmembrane transport (GO:0055085),Molecular Function: ion channel activity (GO:0005216),Molecular Function: voltage-gated potassium channel activity (GO:0005249),Cellular Component: membrane (GO:0016020);InterPro=Potassium channel%2C voltage-dependent%2C EAG/ELK/ERG (IPR003938),Ion transport domain (IPR005821),RmlC-like jelly roll fold (IPR014710),Cyclic nucleotide-binding-like (IPR018490),Cyclic nucleotide-binding domain (IPR000595),KHA domain (IPR021789);Manual Curation=December 16%2C 2016;Literature_PMID=23967316;Oryzabase=10367
Chr01	irgsp1_rep	five_prime_UTR	6022001	6022156	.	-	.	Parent=Os01t0210700-02
Chr01	irgsp1_rep	CDS	6021885	6022000	.	-	0	Parent=Os01t0210700-02
Chr01	irgsp1_rep	CDS	6021577	6021792	.	-	1	Parent=Os01t0210700-02
Chr01	irgsp1_rep	CDS	6021333	6021488	.	-	1	Parent=Os01t0210700-02
Chr01	irgsp1_rep	CDS	6021197	6021254	.	-	1	Parent=Os01t0210700-02
Chr01	irgsp1_rep	CDS	6020747	6021064	.	-	0	Parent=Os01t0210700-02
Chr01	irgsp1_rep	CDS	6020042	6020281	.	-	0	Parent=Os01t0210700-02
Chr01	irgsp1_rep	CDS	6019827	6019925	.	-	0	Parent=Os01t0210700-02
Chr01	irgsp1_rep	CDS	6019703	6019735	.	-	0	Parent=Os01t0210700-02
Chr01	irgsp1_rep	CDS	6019432	6019617	.	-	0	Parent=Os01t0210700-02
Chr01	irgsp1_rep	CDS	6019069	6019339	.	-	0	Parent=Os01t0210700-02
Chr01	irgsp1_rep	CDS	6018131	6018243	.	-	2	Parent=Os01t0210700-02
Chr01	irgsp1_rep	three_prime_UTR	6017745	6018130	.	-	.	Parent=Os01t0210700-02
Chr01	irgsp1_rep	mRNA	6017896	6022072	.	+	.	ID=Os01t0210750-00;Name=Os01t0210750-00;Locus_id=Os01g0210750;Note=Hypothetical protein.;Transcript_evidence=tplb0036k14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0210750-00
Chr01	irgsp1_rep	five_prime_UTR	6017896	6018311	.	+	.	Parent=Os01t0210750-00
Chr01	irgsp1_rep	five_prime_UTR	6018778	6019272	.	+	.	Parent=Os01t0210750-00
Chr01	irgsp1_rep	five_prime_UTR	6019420	6019638	.	+	.	Parent=Os01t0210750-00
Chr01	irgsp1_rep	five_prime_UTR	6019817	6019932	.	+	.	Parent=Os01t0210750-00
Chr01	irgsp1_rep	five_prime_UTR	6020045	6020426	.	+	.	Parent=Os01t0210750-00
Chr01	irgsp1_rep	CDS	6020427	6020774	.	+	0	Parent=Os01t0210750-00
Chr01	irgsp1_rep	three_prime_UTR	6020775	6021045	.	+	.	Parent=Os01t0210750-00
Chr01	irgsp1_rep	three_prime_UTR	6021182	6021253	.	+	.	Parent=Os01t0210750-00
Chr01	irgsp1_rep	three_prime_UTR	6021332	6021488	.	+	.	Parent=Os01t0210750-00
Chr01	irgsp1_rep	three_prime_UTR	6021577	6021780	.	+	.	Parent=Os01t0210750-00
Chr01	irgsp1_rep	three_prime_UTR	6021869	6022072	.	+	.	Parent=Os01t0210750-00
Chr01	irgsp1_rep	mRNA	6025074	6029638	.	+	.	ID=Os01t0210800-01;Name=Os01t0210800-01;Locus_id=Os01g0210800;Note=Conserved hypothetical protein.;Transcript_evidence=AK069335 (DDBJ%2C Best hit);ORF_evidence=B9EU17 (UniProt);NIAS_FLcDNA=J023012A21;TENOR=Os01t0210800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	6025074	6025153	.	+	.	Parent=Os01t0210800-01
Chr01	irgsp1_rep	CDS	6025154	6025315	.	+	0	Parent=Os01t0210800-01
Chr01	irgsp1_rep	CDS	6025725	6025802	.	+	0	Parent=Os01t0210800-01
Chr01	irgsp1_rep	CDS	6025909	6026129	.	+	0	Parent=Os01t0210800-01
Chr01	irgsp1_rep	CDS	6026517	6026526	.	+	1	Parent=Os01t0210800-01
Chr01	irgsp1_rep	three_prime_UTR	6026527	6026788	.	+	.	Parent=Os01t0210800-01
Chr01	irgsp1_rep	three_prime_UTR	6026897	6026961	.	+	.	Parent=Os01t0210800-01
Chr01	irgsp1_rep	three_prime_UTR	6027570	6027763	.	+	.	Parent=Os01t0210800-01
Chr01	irgsp1_rep	three_prime_UTR	6028233	6028441	.	+	.	Parent=Os01t0210800-01
Chr01	irgsp1_rep	three_prime_UTR	6029147	6029638	.	+	.	Parent=Os01t0210800-01
Chr01	irgsp1_rep	mRNA	6031025	6032833	.	-	.	ID=Os01t0210900-01;Name=Os01t0210900-01;Locus_id=Os01g0210900;Note=CytoChrome P450 family protein.;Transcript_evidence=AK071150 (DDBJ%2C Best hit);ORF_evidence=Q2MIZ9 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: monooxygenase activity (GO:0004497),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group IV (IPR002403),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J023078H20;Expression=AK071150;TENOR=Os01t0210900-01;KEGG=Os01t0210900-01
Chr01	irgsp1_rep	five_prime_UTR	6032781	6032833	.	-	.	Parent=Os01t0210900-01
Chr01	irgsp1_rep	CDS	6031245	6032780	.	-	0	Parent=Os01t0210900-01
Chr01	irgsp1_rep	three_prime_UTR	6031025	6031244	.	-	.	Parent=Os01t0210900-01
Chr01	irgsp1_rep	mRNA	6037454	6039022	.	-	.	ID=Os01t0211000-00;Name=Os01t0211000-00;Locus_id=Os01g0211000;Note=CytoChrome P450 family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2MIZ9 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os01t0211000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	6037454	6039022	.	-	0	Parent=Os01t0211000-00
Chr01	irgsp1_rep	mRNA	6057440	6058954	.	-	.	ID=Os01t0211200-00;Name=Os01t0211200-00;Locus_id=Os01g0211200;Oryzabase Gene Name Synonym(s)=CytoChrome P450 family protein;Note=CytoChrome P450 family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2MIZ9 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);Oryzabase=23370;TENOR=Os01t0211200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	6057440	6058954	.	-	0	Parent=Os01t0211200-00
Chr01	irgsp1_rep	mRNA	6063140	6063607	.	-	.	ID=Os01t0211400-00;Name=Os01t0211400-00;Locus_id=Os01g0211400;Note=Non-protein coding transcript.;Transcript_evidence=AK373128 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0211400-00
Chr01	irgsp1_rep	exon	6063140	6063607	.	-	.	Parent=Os01t0211400-00
Chr01	irgsp1_rep	mRNA	6076731	6078239	.	-	.	ID=Os01t0211600-01;Name=Os01t0211600-01;Locus_id=Os01g0211600;Note=CytoChrome P450 family protein.;Transcript_evidence=AK060710 (DDBJ%2C Best hit);ORF_evidence=Q2MIZ9 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: monooxygenase activity (GO:0004497),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group IV (IPR002403),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=001-031-A12;Expression=AK060710;TENOR=Os01t0211600-01;KEGG=Os01t0211600-01
Chr01	irgsp1_rep	five_prime_UTR	6078238	6078239	.	-	.	Parent=Os01t0211600-01
Chr01	irgsp1_rep	CDS	6077089	6078237	.	-	0	Parent=Os01t0211600-01
Chr01	irgsp1_rep	three_prime_UTR	6076731	6077088	.	-	.	Parent=Os01t0211600-01
Chr01	irgsp1_rep	mRNA	6094692	6096528	.	-	.	ID=Os01t0211800-01;Name=Os01t0211800-01;Locus_id=Os01g0211800;CGSNL Gene Symbol=BZIP2;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 2;Oryzabase Gene Symbol Synonym(s)=OsbZIP02%2C OsbZIP2%2C OsSTA8;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 02;Note=Similar to VirE2-interacting protein VIP1.;Transcript_evidence=AK100944 (DDBJ%2C Best hit);ORF_evidence=A2ZQL2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),Basic leucine zipper (IPR011700);NIAS_FLcDNA=J023138F18;Oryzabase=10093;Expression=AK100944;TENOR=Os01t0211800-01;KEGG=Os01t0211800-01
Chr01	irgsp1_rep	five_prime_UTR	6096456	6096528	.	-	.	Parent=Os01t0211800-01
Chr01	irgsp1_rep	CDS	6095875	6096455	.	-	0	Parent=Os01t0211800-01
Chr01	irgsp1_rep	CDS	6095698	6095788	.	-	1	Parent=Os01t0211800-01
Chr01	irgsp1_rep	CDS	6095458	6095584	.	-	0	Parent=Os01t0211800-01
Chr01	irgsp1_rep	CDS	6095109	6095302	.	-	2	Parent=Os01t0211800-01
Chr01	irgsp1_rep	three_prime_UTR	6094692	6095108	.	-	.	Parent=Os01t0211800-01
Chr01	irgsp1_rep	mRNA	6109134	6109760	.	+	.	ID=Os01t0212000-01;Name=Os01t0212000-01;Locus_id=Os01g0212000;Note=Hypothetical protein.;Transcript_evidence=AK063245 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-112-G09;Expression=AK063245;TENOR=Os01t0212000-01;KEGG=Os01t0212000-01
Chr01	irgsp1_rep	five_prime_UTR	6109134	6109134	.	+	.	Parent=Os01t0212000-01
Chr01	irgsp1_rep	CDS	6109135	6109518	.	+	0	Parent=Os01t0212000-01
Chr01	irgsp1_rep	three_prime_UTR	6109519	6109760	.	+	.	Parent=Os01t0212000-01
Chr01	irgsp1_rep	mRNA	6112811	6125509	.	+	.	ID=Os01t0212100-01;Name=Os01t0212100-01;Locus_id=Os01g0212100;Note=DEAD-like helicase%2C N-terminal domain containing protein.;Transcript_evidence=AK101456 (DDBJ%2C Best hit);ORF_evidence=D0VLU7 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C ATP-dependent%2C DEAH-box type%2C conserved site (IPR002464),Helicase-associated domain (IPR007502),Domain of unknown function DUF1605 (IPR011709),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J033040B09;Expression=AK101456;TENOR=Os01t0212100-01;KEGG=Os01t0212100-01 (EC:3.6.4.13)
Chr01	irgsp1_rep	five_prime_UTR	6112811	6112889	.	+	.	Parent=Os01t0212100-01
Chr01	irgsp1_rep	CDS	6112890	6113002	.	+	0	Parent=Os01t0212100-01
Chr01	irgsp1_rep	CDS	6113121	6113265	.	+	1	Parent=Os01t0212100-01
Chr01	irgsp1_rep	CDS	6114012	6114086	.	+	0	Parent=Os01t0212100-01
Chr01	irgsp1_rep	CDS	6114902	6114991	.	+	0	Parent=Os01t0212100-01
Chr01	irgsp1_rep	CDS	6115171	6115250	.	+	0	Parent=Os01t0212100-01
Chr01	irgsp1_rep	CDS	6115510	6115579	.	+	1	Parent=Os01t0212100-01
Chr01	irgsp1_rep	CDS	6115691	6115776	.	+	0	Parent=Os01t0212100-01
Chr01	irgsp1_rep	CDS	6116500	6116569	.	+	1	Parent=Os01t0212100-01
Chr01	irgsp1_rep	CDS	6116664	6116759	.	+	0	Parent=Os01t0212100-01
Chr01	irgsp1_rep	CDS	6117633	6117738	.	+	0	Parent=Os01t0212100-01
Chr01	irgsp1_rep	CDS	6117921	6117967	.	+	2	Parent=Os01t0212100-01
Chr01	irgsp1_rep	CDS	6118044	6118127	.	+	0	Parent=Os01t0212100-01
Chr01	irgsp1_rep	CDS	6118199	6118252	.	+	0	Parent=Os01t0212100-01
Chr01	irgsp1_rep	CDS	6118451	6118551	.	+	0	Parent=Os01t0212100-01
Chr01	irgsp1_rep	CDS	6119744	6119834	.	+	1	Parent=Os01t0212100-01
Chr01	irgsp1_rep	CDS	6120989	6121153	.	+	0	Parent=Os01t0212100-01
Chr01	irgsp1_rep	CDS	6122149	6122238	.	+	0	Parent=Os01t0212100-01
Chr01	irgsp1_rep	CDS	6122341	6122412	.	+	0	Parent=Os01t0212100-01
Chr01	irgsp1_rep	CDS	6122800	6122898	.	+	0	Parent=Os01t0212100-01
Chr01	irgsp1_rep	CDS	6123025	6123111	.	+	0	Parent=Os01t0212100-01
Chr01	irgsp1_rep	CDS	6123899	6123952	.	+	0	Parent=Os01t0212100-01
Chr01	irgsp1_rep	CDS	6124709	6124788	.	+	0	Parent=Os01t0212100-01
Chr01	irgsp1_rep	CDS	6124882	6125029	.	+	1	Parent=Os01t0212100-01
Chr01	irgsp1_rep	three_prime_UTR	6125030	6125039	.	+	.	Parent=Os01t0212100-01
Chr01	irgsp1_rep	three_prime_UTR	6125123	6125509	.	+	.	Parent=Os01t0212100-01
Chr01	irgsp1_rep	mRNA	6112846	6132696	.	+	.	ID=Os01t0212100-02;Name=Os01t0212100-02;Locus_id=Os01g0212100;Note=Similar to P20Sh148J07 (Fragment).;Transcript_evidence=AK065467 (DDBJ%2C Best hit);ORF_evidence=D0VLU3 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C ATP-dependent%2C DEAH-box type%2C conserved site (IPR002464),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J013020I01;TENOR=Os01t0212100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	6112846	6113002	.	+	.	Parent=Os01t0212100-02
Chr01	irgsp1_rep	five_prime_UTR	6113121	6113265	.	+	.	Parent=Os01t0212100-02
Chr01	irgsp1_rep	five_prime_UTR	6114012	6114028	.	+	.	Parent=Os01t0212100-02
Chr01	irgsp1_rep	CDS	6114029	6114086	.	+	0	Parent=Os01t0212100-02
Chr01	irgsp1_rep	CDS	6114906	6114991	.	+	2	Parent=Os01t0212100-02
Chr01	irgsp1_rep	CDS	6115171	6115250	.	+	0	Parent=Os01t0212100-02
Chr01	irgsp1_rep	CDS	6115510	6115579	.	+	1	Parent=Os01t0212100-02
Chr01	irgsp1_rep	CDS	6115691	6115776	.	+	0	Parent=Os01t0212100-02
Chr01	irgsp1_rep	CDS	6116500	6116569	.	+	1	Parent=Os01t0212100-02
Chr01	irgsp1_rep	CDS	6116664	6116759	.	+	0	Parent=Os01t0212100-02
Chr01	irgsp1_rep	CDS	6117633	6117738	.	+	0	Parent=Os01t0212100-02
Chr01	irgsp1_rep	CDS	6117921	6117967	.	+	2	Parent=Os01t0212100-02
Chr01	irgsp1_rep	CDS	6118044	6118127	.	+	0	Parent=Os01t0212100-02
Chr01	irgsp1_rep	CDS	6118199	6118297	.	+	0	Parent=Os01t0212100-02
Chr01	irgsp1_rep	three_prime_UTR	6118298	6118551	.	+	.	Parent=Os01t0212100-02
Chr01	irgsp1_rep	three_prime_UTR	6119744	6119834	.	+	.	Parent=Os01t0212100-02
Chr01	irgsp1_rep	three_prime_UTR	6120989	6121153	.	+	.	Parent=Os01t0212100-02
Chr01	irgsp1_rep	three_prime_UTR	6122149	6122238	.	+	.	Parent=Os01t0212100-02
Chr01	irgsp1_rep	three_prime_UTR	6122341	6122412	.	+	.	Parent=Os01t0212100-02
Chr01	irgsp1_rep	three_prime_UTR	6122800	6122898	.	+	.	Parent=Os01t0212100-02
Chr01	irgsp1_rep	three_prime_UTR	6123025	6123111	.	+	.	Parent=Os01t0212100-02
Chr01	irgsp1_rep	three_prime_UTR	6123899	6123952	.	+	.	Parent=Os01t0212100-02
Chr01	irgsp1_rep	three_prime_UTR	6124709	6124788	.	+	.	Parent=Os01t0212100-02
Chr01	irgsp1_rep	three_prime_UTR	6124882	6125039	.	+	.	Parent=Os01t0212100-02
Chr01	irgsp1_rep	three_prime_UTR	6132182	6132696	.	+	.	Parent=Os01t0212100-02
Chr01	irgsp1_rep	mRNA	6134203	6139136	.	+	.	ID=Os01t0212400-01;Name=Os01t0212400-01;Locus_id=Os01g0212400;Oryzabase Gene Symbol Synonym(s)=OsEFCAX1%2C OsNCX1%2C OsNCX1.1%2C OsNCX1.2%2C NCX1%2C OsNCL1%2C NCL1;Oryzabase Gene Name Synonym(s)=EF-hand containing H+/cation exchanger 1%2C EF-hand containing CAX 1%2C Na+/Ca2+ Exchanger 1%2C Sodium/Calcium exchanger 1%2C Na+/Ca2+ exchanger-like protein 1;Note=EF-Hand type domain containing protein.;Transcript_evidence=AK066468 (DDBJ%2C Best hit);ORF_evidence=B6U1M5 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),Sodium/calcium exchanger membrane region (IPR004837),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J013066B01;Oryzabase=15460;Expression=AK066468;TENOR=Os01t0212400-01;KEGG=Os01t0212400-01
Chr01	irgsp1_rep	five_prime_UTR	6134203	6134238	.	+	.	Parent=Os01t0212400-01
Chr01	irgsp1_rep	CDS	6134239	6134656	.	+	0	Parent=Os01t0212400-01
Chr01	irgsp1_rep	CDS	6136857	6137045	.	+	2	Parent=Os01t0212400-01
Chr01	irgsp1_rep	CDS	6137316	6137497	.	+	2	Parent=Os01t0212400-01
Chr01	irgsp1_rep	CDS	6137604	6137749	.	+	0	Parent=Os01t0212400-01
Chr01	irgsp1_rep	CDS	6137836	6138103	.	+	1	Parent=Os01t0212400-01
Chr01	irgsp1_rep	CDS	6138256	6138558	.	+	0	Parent=Os01t0212400-01
Chr01	irgsp1_rep	CDS	6138657	6138905	.	+	0	Parent=Os01t0212400-01
Chr01	irgsp1_rep	three_prime_UTR	6138906	6139136	.	+	.	Parent=Os01t0212400-01
Chr01	irgsp1_rep	mRNA	6139624	6141644	.	-	.	ID=Os01t0212500-01;Name=Os01t0212500-01;Locus_id=Os01g0212500;Oryzabase Gene Symbol Synonym(s)=OsSPEAR2%2C SPEAR2;Oryzabase Gene Name Synonym(s)="SPL-like%2C EAR-containing protein 2";Note=Conserved hypothetical protein.;Transcript_evidence=AK120776 (DDBJ%2C Best hit);ORF_evidence=Q5QNI8 (UniProt);NIAS_FLcDNA=J023009G15;Oryzabase=22330;TENOR=Os01t0212500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	6141470	6141644	.	-	.	Parent=Os01t0212500-01
Chr01	irgsp1_rep	CDS	6141062	6141469	.	-	0	Parent=Os01t0212500-01
Chr01	irgsp1_rep	CDS	6140848	6140964	.	-	0	Parent=Os01t0212500-01
Chr01	irgsp1_rep	CDS	6140573	6140766	.	-	0	Parent=Os01t0212500-01
Chr01	irgsp1_rep	CDS	6139989	6140167	.	-	1	Parent=Os01t0212500-01
Chr01	irgsp1_rep	CDS	6139813	6139889	.	-	2	Parent=Os01t0212500-01
Chr01	irgsp1_rep	three_prime_UTR	6139624	6139812	.	-	.	Parent=Os01t0212500-01
Chr01	irgsp1_rep	mRNA	6172143	6173186	.	-	.	ID=Os01t0212700-01;Name=Os01t0212700-01;Locus_id=Os01g0212700;Note=Similar to RING-H2 finger protein ATL2K.;Transcript_evidence=AK108311 (DDBJ%2C Best hit);ORF_evidence=NP_001146952.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=002-141-F12;TENOR=Os01t0212700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	6173186	6173186	.	-	.	Parent=Os01t0212700-01
Chr01	irgsp1_rep	CDS	6172400	6173185	.	-	0	Parent=Os01t0212700-01
Chr01	irgsp1_rep	three_prime_UTR	6172143	6172399	.	-	.	Parent=Os01t0212700-01
Chr01	irgsp1_rep	mRNA	6182929	6183873	.	+	.	ID=Os01t0212900-00;Name=Os01t0212900-00;Locus_id=Os01g0212900;Note=Hypothetical conserved gene.;Transcript_evidence=CT834777 (DDBJ%2C Best hit);ORF_evidence=B9FGH5 (UniProt);TENOR=Os01t0212900-00;KEGG=Os01t0212900-00
Chr01	irgsp1_rep	five_prime_UTR	6182929	6183008	.	+	.	Parent=Os01t0212900-00
Chr01	irgsp1_rep	CDS	6183009	6183494	.	+	0	Parent=Os01t0212900-00
Chr01	irgsp1_rep	three_prime_UTR	6183495	6183873	.	+	.	Parent=Os01t0212900-00
Chr01	irgsp1_rep	mRNA	6185622	6189219	.	-	.	ID=Os01t0213100-00;Name=Os01t0213100-00;Locus_id=Os01g0213100;Note=Similar to Zinc finger%2C C3HC4 type family protein.;Transcript_evidence=EU969212 (DDBJ);ORF_evidence=Q2QYS1 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os01t0213100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	6188674	6189219	.	-	0	Parent=Os01t0213100-00
Chr01	irgsp1_rep	CDS	6185622	6186254	.	-	0	Parent=Os01t0213100-00
Chr01	irgsp1_rep	mRNA	6191927	6193745	.	+	.	ID=Os01t0213300-00;Name=Os01t0213300-00;Locus_id=Os01g0213300;CGSNL Gene Symbol=MADS91;CGSNL Gene Name=MADS BOX GENE 91;Oryzabase Gene Symbol Synonym(s)=OsMADS91;Oryzabase Gene Name Synonym(s)=MADS box gene91%2C MADS box gene 91%2C MADS-box transcription factor 91;Note=Transcription factor%2C MADS-box domain containing protein.;Transcript_evidence=DQ512368 (DDBJ);ORF_evidence=Q94IZ9 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box (IPR002100);Oryzabase=12327;TENOR=Os01t0213300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	6191927	6191930	.	+	.	Parent=Os01t0213300-00
Chr01	irgsp1_rep	CDS	6191931	6193745	.	+	0	Parent=Os01t0213300-00
Chr01	irgsp1_rep	mRNA	6195350	6199436	.	+	.	ID=Os01t0213350-01;Name=Os01t0213350-01;Locus_id=Os01g0213350;Note=Hypothetical gene.;Transcript_evidence=AK288324 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090022F09;TENOR=Os01t0213350-01;KEGG=Os01t0213350-01
Chr01	irgsp1_rep	five_prime_UTR	6195350	6196666	.	+	.	Parent=Os01t0213350-01
Chr01	irgsp1_rep	CDS	6196667	6196903	.	+	0	Parent=Os01t0213350-01
Chr01	irgsp1_rep	three_prime_UTR	6196904	6199436	.	+	.	Parent=Os01t0213350-01
Chr01	irgsp1_rep	mRNA	6199245	6200202	.	-	.	ID=Os01t0213400-01;Name=Os01t0213400-01;Locus_id=Os01g0213400;CGSNL Gene Symbol=RFPH2-8;CGSNL Gene Name=RING-H2 PROTEIN 8;Oryzabase Gene Symbol Synonym(s)=OsRFPH2-8;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPH2-8%2C RING-H2 protein 8;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK068075 (DDBJ%2C Best hit);ORF_evidence=B7EH89 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J013134A03;Oryzabase=11769;Expression=AK068075;TENOR=Os01t0213400-01;KEGG=Os01t0213400-01
Chr01	irgsp1_rep	five_prime_UTR	6200115	6200202	.	-	.	Parent=Os01t0213400-01
Chr01	irgsp1_rep	CDS	6199401	6200114	.	-	0	Parent=Os01t0213400-01
Chr01	irgsp1_rep	three_prime_UTR	6199245	6199400	.	-	.	Parent=Os01t0213400-01
Chr01	irgsp1_rep	mRNA	6221640	6224242	.	-	.	ID=Os01t0213800-01;Name=Os01t0213800-01;Locus_id=Os01g0213800;RAP-DB Gene Symbol Synonym(s)=OsPCF5%2C PCF5;RAP-DB Gene Name Synonym(s)=PROLIFERATING CELL FACTOR 5;CGSNL Gene Symbol=PCF5;CGSNL Gene Name=PROLIFERATING CELL FACTOR 5;Oryzabase Gene Symbol Synonym(s)=OsPCF5;Note=Plant-specific transcription factor%2C miR319 target gene;Transcript_evidence=AK241658,AB071805;ORF_evidence=Q8LT07;InterPro=Transcription factor%2C TCP (IPR005333),Transcription factor TCP subgroup (IPR017887);NIAS_FLcDNA=J065191F09;Manual Curation=January 4%2C 2018;Literature_PMID=23651319,12000681;Oryzabase=11692;TENOR=Os01t0213800-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	6224124	6224242	.	-	.	Parent=Os01t0213800-01
Chr01	irgsp1_rep	five_prime_UTR	6223683	6224016	.	-	.	Parent=Os01t0213800-01
Chr01	irgsp1_rep	CDS	6222306	6223682	.	-	0	Parent=Os01t0213800-01
Chr01	irgsp1_rep	three_prime_UTR	6222204	6222305	.	-	.	Parent=Os01t0213800-01
Chr01	irgsp1_rep	three_prime_UTR	6221640	6222089	.	-	.	Parent=Os01t0213800-01
Chr01	irgsp1_rep	mRNA	6221644	6224197	.	+	.	ID=Os01t0214001-00;Name=Os01t0214001-00;Locus_id=Os01g0214001;Note=Hypothetical protein.;Transcript_evidence=tplb0053f05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0214001-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	6221644	6222018	.	+	.	Parent=Os01t0214001-00
Chr01	irgsp1_rep	five_prime_UTR	6222116	6223586	.	+	.	Parent=Os01t0214001-00
Chr01	irgsp1_rep	CDS	6223587	6224020	.	+	0	Parent=Os01t0214001-00
Chr01	irgsp1_rep	CDS	6224128	6224146	.	+	1	Parent=Os01t0214001-00
Chr01	irgsp1_rep	three_prime_UTR	6224147	6224197	.	+	.	Parent=Os01t0214001-00
Chr01	irgsp1_rep	mRNA	6242516	6244879	.	-	.	ID=Os01t0214200-01;Name=Os01t0214200-01;Locus_id=Os01g0214200;CGSNL Gene Symbol=GELP1;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsGELP1%2C OsEST1;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 1%2C esterase 1;Note=Esterase%2C SGNH hydrolase-type%2C subgroup domain containing protein.;Transcript_evidence=AK061229 (DDBJ%2C Best hit);ORF_evidence=B6THH7 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087),Esterase%2C SGNH hydrolase-type (IPR013830),Esterase%2C SGNH hydrolase-type%2C subgroup (IPR013831);NIAS_FLcDNA=006-211-A03;Oryzabase=10952;Expression=AK061229;TENOR=Os01t0214200-01;KEGG=Os01t0214200-01
Chr01	irgsp1_rep	five_prime_UTR	6244775	6244879	.	-	.	Parent=Os01t0214200-01
Chr01	irgsp1_rep	CDS	6244676	6244774	.	-	0	Parent=Os01t0214200-01
Chr01	irgsp1_rep	CDS	6244372	6244593	.	-	0	Parent=Os01t0214200-01
Chr01	irgsp1_rep	CDS	6244202	6244269	.	-	0	Parent=Os01t0214200-01
Chr01	irgsp1_rep	CDS	6243522	6243689	.	-	1	Parent=Os01t0214200-01
Chr01	irgsp1_rep	CDS	6242710	6242869	.	-	1	Parent=Os01t0214200-01
Chr01	irgsp1_rep	three_prime_UTR	6242516	6242709	.	-	.	Parent=Os01t0214200-01
Chr01	irgsp1_rep	mRNA	6248293	6253373	.	+	.	ID=Os01t0214300-01;Name=Os01t0214300-01;Locus_id=Os01g0214300;Note=Conserved hypothetical protein.;Transcript_evidence=AK060604 (DDBJ%2C Best hit);ORF_evidence=B9EU24 (UniProt);NIAS_FLcDNA=001-025-B01;TENOR=Os01t0214300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	6248293	6248541	.	+	0	Parent=Os01t0214300-01
Chr01	irgsp1_rep	CDS	6248625	6248682	.	+	0	Parent=Os01t0214300-01
Chr01	irgsp1_rep	CDS	6248806	6248928	.	+	2	Parent=Os01t0214300-01
Chr01	irgsp1_rep	CDS	6249045	6249115	.	+	2	Parent=Os01t0214300-01
Chr01	irgsp1_rep	three_prime_UTR	6249116	6249129	.	+	.	Parent=Os01t0214300-01
Chr01	irgsp1_rep	three_prime_UTR	6252894	6253031	.	+	.	Parent=Os01t0214300-01
Chr01	irgsp1_rep	three_prime_UTR	6253040	6253373	.	+	.	Parent=Os01t0214300-01
Chr01	irgsp1_rep	mRNA	6253793	6256906	.	+	.	ID=Os01t0214400-01;Name=Os01t0214400-01;Locus_id=Os01g0214400;Note=Similar to predicted protein.;Transcript_evidence=AK242400 (DDBJ%2C Best hit);ORF_evidence=Q9LNC3 (UniProt);InterPro=Protein of unknown function DUF455 (IPR007402),Uncharacterised conserved protein UCP012318 (IPR011197);NIAS_FLcDNA=J080068F06;TENOR=Os01t0214400-01;KEGG=Os01t0214400-01
Chr01	irgsp1_rep	five_prime_UTR	6253793	6253856	.	+	.	Parent=Os01t0214400-01
Chr01	irgsp1_rep	CDS	6253857	6254252	.	+	0	Parent=Os01t0214400-01
Chr01	irgsp1_rep	CDS	6254372	6254613	.	+	0	Parent=Os01t0214400-01
Chr01	irgsp1_rep	CDS	6254753	6254879	.	+	1	Parent=Os01t0214400-01
Chr01	irgsp1_rep	three_prime_UTR	6254880	6255167	.	+	.	Parent=Os01t0214400-01
Chr01	irgsp1_rep	three_prime_UTR	6255241	6255322	.	+	.	Parent=Os01t0214400-01
Chr01	irgsp1_rep	three_prime_UTR	6255602	6255647	.	+	.	Parent=Os01t0214400-01
Chr01	irgsp1_rep	three_prime_UTR	6255719	6255811	.	+	.	Parent=Os01t0214400-01
Chr01	irgsp1_rep	three_prime_UTR	6256620	6256906	.	+	.	Parent=Os01t0214400-01
Chr01	irgsp1_rep	mRNA	6257846	6258501	.	+	.	ID=Os01t0214500-01;Name=Os01t0214500-01;Locus_id=Os01g0214500;Note=Conserved hypothetical protein.;Transcript_evidence=AK062484 (DDBJ%2C Best hit);ORF_evidence=A2WM18 (UniProt);NIAS_FLcDNA=001-103-G08;Expression=AK062484;TENOR=Os01t0214500-01;KEGG=Os01t0214500-01
Chr01	irgsp1_rep	five_prime_UTR	6257846	6257914	.	+	.	Parent=Os01t0214500-01
Chr01	irgsp1_rep	CDS	6257915	6258024	.	+	0	Parent=Os01t0214500-01
Chr01	irgsp1_rep	CDS	6258141	6258264	.	+	1	Parent=Os01t0214500-01
Chr01	irgsp1_rep	three_prime_UTR	6258265	6258501	.	+	.	Parent=Os01t0214500-01
Chr01	irgsp1_rep	mRNA	6267440	6270770	.	+	.	ID=Os01t0214600-01;Name=Os01t0214600-01;Locus_id=Os01g0214600;CGSNL Gene Symbol=GELP2;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsGELP2%2C OsGELP2a%2C OsGELP2b;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 2;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK103614 (DDBJ%2C Best hit);ORF_evidence=B6TY14 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=J033133K20;Oryzabase=10953;Expression=AK103614;TENOR=Os01t0214600-01;KEGG=Os01t0214600-01
Chr01	irgsp1_rep	five_prime_UTR	6267440	6267559	.	+	.	Parent=Os01t0214600-01
Chr01	irgsp1_rep	CDS	6267560	6267807	.	+	0	Parent=Os01t0214600-01
Chr01	irgsp1_rep	CDS	6267901	6268112	.	+	1	Parent=Os01t0214600-01
Chr01	irgsp1_rep	CDS	6268198	6268295	.	+	2	Parent=Os01t0214600-01
Chr01	irgsp1_rep	CDS	6268442	6268715	.	+	0	Parent=Os01t0214600-01
Chr01	irgsp1_rep	CDS	6270311	6270528	.	+	2	Parent=Os01t0214600-01
Chr01	irgsp1_rep	three_prime_UTR	6270529	6270770	.	+	.	Parent=Os01t0214600-01
Chr01	irgsp1_rep	mRNA	6278520	6283559	.	+	.	ID=Os01t0214800-01;Name=Os01t0214800-01;Locus_id=Os01g0214800;CGSNL Gene Symbol=GELP3;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsGELP3%2C OsGELP3a%2C OsGELP3b;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 3;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK065001 (DDBJ%2C Best hit);ORF_evidence=B6TZ91 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=J013001E04;Oryzabase=10954;Expression=AK065001;TENOR=Os01t0214800-01;KEGG=Os01t0214800-01
Chr01	irgsp1_rep	five_prime_UTR	6278520	6278669	.	+	.	Parent=Os01t0214800-01
Chr01	irgsp1_rep	CDS	6278670	6278916	.	+	0	Parent=Os01t0214800-01
Chr01	irgsp1_rep	CDS	6279020	6279235	.	+	2	Parent=Os01t0214800-01
Chr01	irgsp1_rep	CDS	6279329	6279475	.	+	2	Parent=Os01t0214800-01
Chr01	irgsp1_rep	CDS	6279568	6279843	.	+	2	Parent=Os01t0214800-01
Chr01	irgsp1_rep	CDS	6283015	6283247	.	+	2	Parent=Os01t0214800-01
Chr01	irgsp1_rep	three_prime_UTR	6283248	6283559	.	+	.	Parent=Os01t0214800-01
Chr01	irgsp1_rep	mRNA	6278521	6281742	.	+	.	ID=Os01t0214800-02;Name=Os01t0214800-02;Locus_id=Os01g0214800;CGSNL Gene Symbol=GELP3;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsGELP3%2C OsGELP3a%2C OsGELP3b;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 3;Note=Similar to Esterase.;Transcript_evidence=AK069801 (DDBJ%2C Best hit);ORF_evidence=B6TZ91 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=J023030G06;Oryzabase=10954;TENOR=Os01t0214800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	6278521	6278669	.	+	.	Parent=Os01t0214800-02
Chr01	irgsp1_rep	CDS	6278670	6278916	.	+	0	Parent=Os01t0214800-02
Chr01	irgsp1_rep	CDS	6279020	6279235	.	+	2	Parent=Os01t0214800-02
Chr01	irgsp1_rep	CDS	6279329	6279475	.	+	2	Parent=Os01t0214800-02
Chr01	irgsp1_rep	CDS	6279568	6279989	.	+	2	Parent=Os01t0214800-02
Chr01	irgsp1_rep	three_prime_UTR	6279990	6281742	.	+	.	Parent=Os01t0214800-02
Chr01	irgsp1_rep	mRNA	6278611	6283559	.	+	.	ID=Os01t0214800-03;Name=Os01t0214800-03;Locus_id=Os01g0214800;CGSNL Gene Symbol=GELP3;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsGELP3%2C OsGELP3a%2C OsGELP3b;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 3;Note=Similar to Esterase.;Transcript_evidence=AK060120 (DDBJ%2C Best hit),AK104740 (DDBJ%2C Best hit);ORF_evidence=B6TZ91 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=006-308-F04,001-038-D10;Oryzabase=10954;TENOR=Os01t0214800-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	6278611	6278669	.	+	.	Parent=Os01t0214800-03
Chr01	irgsp1_rep	CDS	6278670	6278916	.	+	0	Parent=Os01t0214800-03
Chr01	irgsp1_rep	CDS	6279020	6279235	.	+	2	Parent=Os01t0214800-03
Chr01	irgsp1_rep	CDS	6279329	6279363	.	+	2	Parent=Os01t0214800-03
Chr01	irgsp1_rep	CDS	6279591	6279843	.	+	0	Parent=Os01t0214800-03
Chr01	irgsp1_rep	CDS	6283015	6283247	.	+	2	Parent=Os01t0214800-03
Chr01	irgsp1_rep	three_prime_UTR	6283248	6283559	.	+	.	Parent=Os01t0214800-03
Chr01	irgsp1_rep	mRNA	6278711	6283235	.	-	.	ID=Os01t0214901-00;Name=Os01t0214901-00;Locus_id=Os01g0214901;Note=Hypothetical protein.;Transcript_evidence=tplb0048c08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0214901-00
Chr01	irgsp1_rep	five_prime_UTR	6283031	6283235	.	-	.	Parent=Os01t0214901-00
Chr01	irgsp1_rep	five_prime_UTR	6279534	6279850	.	-	.	Parent=Os01t0214901-00
Chr01	irgsp1_rep	five_prime_UTR	6279363	6279434	.	-	.	Parent=Os01t0214901-00
Chr01	irgsp1_rep	CDS	6279323	6279362	.	-	0	Parent=Os01t0214901-00
Chr01	irgsp1_rep	CDS	6279026	6279218	.	-	2	Parent=Os01t0214901-00
Chr01	irgsp1_rep	CDS	6278711	6278922	.	-	1	Parent=Os01t0214901-00
Chr01	irgsp1_rep	mRNA	6288365	6292301	.	+	.	ID=Os01t0215000-01;Name=Os01t0215000-01;Locus_id=Os01g0215000;CGSNL Gene Symbol=GELP4;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OsGELP4;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 4;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK100754 (DDBJ%2C Best hit);ORF_evidence=Q6H8W7 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=J023118N06;Oryzabase=10955;Expression=AK100754;TENOR=Os01t0215000-01;KEGG=Os01t0215000-01
Chr01	irgsp1_rep	CDS	6288365	6288683	.	+	0	Parent=Os01t0215000-01
Chr01	irgsp1_rep	CDS	6288801	6289016	.	+	2	Parent=Os01t0215000-01
Chr01	irgsp1_rep	CDS	6289165	6289310	.	+	2	Parent=Os01t0215000-01
Chr01	irgsp1_rep	CDS	6291305	6291584	.	+	0	Parent=Os01t0215000-01
Chr01	irgsp1_rep	CDS	6291969	6292165	.	+	2	Parent=Os01t0215000-01
Chr01	irgsp1_rep	three_prime_UTR	6292166	6292301	.	+	.	Parent=Os01t0215000-01
Chr01	irgsp1_rep	mRNA	6296963	6297334	.	+	.	ID=Os01t0215100-00;Name=Os01t0215100-00;Locus_id=Os01g0215100;CGSNL Gene Symbol=SCP2;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 2;Oryzabase Gene Symbol Synonym(s)=OsSCP2%2C SCP3%2C OsSCP3;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 2%2C Serine Carboxypeptidase 3;Note=Similar to scpl50 (serine carboxypeptidase-like 50)%3B serine-type carboxypeptidase.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_172953.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563);Oryzabase=19187;TENOR=Os01t0215100-00
Chr01	irgsp1_rep	CDS	6296963	6297334	.	+	0	Parent=Os01t0215100-00
Chr01	irgsp1_rep	mRNA	6304802	6306605	.	+	.	ID=Os01t0215500-01;Name=Os01t0215500-01;Locus_id=Os01g0215500;CGSNL Gene Symbol=GELP5;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 5;Oryzabase Gene Symbol Synonym(s)=OsGELP5%2C OsGELP5a%2C OsGELP5b;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 5;Note=Similar to esterase.;Transcript_evidence=AK059318 (DDBJ%2C Best hit),AK102384 (DDBJ%2C Best hit);ORF_evidence=NP_001150126.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=001-025-H05,J033092C19;Oryzabase=10956;TENOR=Os01t0215500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	6304802	6304897	.	+	.	Parent=Os01t0215500-01
Chr01	irgsp1_rep	CDS	6304898	6305141	.	+	0	Parent=Os01t0215500-01
Chr01	irgsp1_rep	CDS	6305254	6305621	.	+	2	Parent=Os01t0215500-01
Chr01	irgsp1_rep	CDS	6305692	6305994	.	+	0	Parent=Os01t0215500-01
Chr01	irgsp1_rep	three_prime_UTR	6305995	6306605	.	+	.	Parent=Os01t0215500-01
Chr01	irgsp1_rep	mRNA	6319130	6322307	.	+	.	ID=Os01t0215700-01;Name=Os01t0215700-01;Locus_id=Os01g0215700;CGSNL Gene Symbol=GELP6;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsGELP6;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 6;Note=Esterase%2C SGNH hydrolase-type domain containing protein.;Transcript_evidence=AK059088 (DDBJ%2C Best hit);ORF_evidence=NP_001149156.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087),Esterase%2C SGNH hydrolase-type (IPR013830);NIAS_FLcDNA=001-022-B07;Oryzabase=10957;Expression=AK059088;TENOR=Os01t0215700-01;KEGG=Os01t0215700-01
Chr01	irgsp1_rep	five_prime_UTR	6319130	6319440	.	+	.	Parent=Os01t0215700-01
Chr01	irgsp1_rep	CDS	6319441	6319726	.	+	0	Parent=Os01t0215700-01
Chr01	irgsp1_rep	CDS	6319826	6320041	.	+	2	Parent=Os01t0215700-01
Chr01	irgsp1_rep	CDS	6320147	6320295	.	+	2	Parent=Os01t0215700-01
Chr01	irgsp1_rep	CDS	6320392	6320665	.	+	0	Parent=Os01t0215700-01
Chr01	irgsp1_rep	CDS	6321853	6322064	.	+	2	Parent=Os01t0215700-01
Chr01	irgsp1_rep	three_prime_UTR	6322065	6322307	.	+	.	Parent=Os01t0215700-01
Chr01	irgsp1_rep	mRNA	6319390	6322451	.	+	.	ID=Os01t0215700-02;Name=Os01t0215700-02;Locus_id=Os01g0215700;CGSNL Gene Symbol=GELP6;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsGELP6;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 6;Note=Esterase%2C SGNH hydrolase-type domain containing protein.;Transcript_evidence=AK061118 (DDBJ%2C Best hit),AK119642 (DDBJ%2C Best hit),AK119598 (DDBJ%2C Best hit);ORF_evidence=NP_001149156.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087),Esterase%2C SGNH hydrolase-type (IPR013830);NIAS_FLcDNA=006-207-F05,002-130-F10,002-117-E01;Oryzabase=10957;TENOR=Os01t0215700-02
Chr01	irgsp1_rep	five_prime_UTR	6319390	6319440	.	+	.	Parent=Os01t0215700-02
Chr01	irgsp1_rep	CDS	6319441	6319726	.	+	0	Parent=Os01t0215700-02
Chr01	irgsp1_rep	CDS	6319826	6320041	.	+	2	Parent=Os01t0215700-02
Chr01	irgsp1_rep	CDS	6320147	6320295	.	+	2	Parent=Os01t0215700-02
Chr01	irgsp1_rep	CDS	6320392	6320665	.	+	0	Parent=Os01t0215700-02
Chr01	irgsp1_rep	CDS	6321853	6322064	.	+	2	Parent=Os01t0215700-02
Chr01	irgsp1_rep	three_prime_UTR	6322065	6322451	.	+	.	Parent=Os01t0215700-02
Chr01	irgsp1_rep	mRNA	6319466	6322051	.	-	.	ID=Os01t0215725-00;Name=Os01t0215725-00;Locus_id=Os01g0215725;Note=Hypothetical protein.;Transcript_evidence=tplb0048c08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0215725-00
Chr01	irgsp1_rep	five_prime_UTR	6321864	6322051	.	-	.	Parent=Os01t0215725-00
Chr01	irgsp1_rep	five_prime_UTR	6320419	6320674	.	-	.	Parent=Os01t0215725-00
Chr01	irgsp1_rep	five_prime_UTR	6320124	6320204	.	-	.	Parent=Os01t0215725-00
Chr01	irgsp1_rep	CDS	6319823	6320123	.	-	0	Parent=Os01t0215725-00
Chr01	irgsp1_rep	CDS	6319504	6319724	.	-	2	Parent=Os01t0215725-00
Chr01	irgsp1_rep	three_prime_UTR	6319466	6319503	.	-	.	Parent=Os01t0215725-00
Chr01	irgsp1_rep	mRNA	6326282	6329098	.	+	.	ID=Os01t0215750-01;Name=Os01t0215750-01;Locus_id=Os01g0215750;Note=Hypothetical gene.;Transcript_evidence=AK288679 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090059F24;TENOR=Os01t0215750-01;KEGG=Os01t0215750-01
Chr01	irgsp1_rep	five_prime_UTR	6326282	6326318	.	+	.	Parent=Os01t0215750-01
Chr01	irgsp1_rep	CDS	6326319	6326585	.	+	0	Parent=Os01t0215750-01
Chr01	irgsp1_rep	three_prime_UTR	6326586	6329098	.	+	.	Parent=Os01t0215750-01
Chr01	irgsp1_rep	mRNA	6340836	6344286	.	+	.	ID=Os01t0216000-01;Name=Os01t0216000-01;Locus_id=Os01g0216000;CGSNL Gene Symbol=GELP7;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 7;Oryzabase Gene Symbol Synonym(s)=OsGELP7;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 7;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK058429 (DDBJ%2C Best hit),AK104443 (DDBJ%2C Best hit);ORF_evidence=A2WM28 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=001-015-E09,006-210-G04;Oryzabase=10958;TENOR=Os01t0216000-01
Chr01	irgsp1_rep	five_prime_UTR	6340836	6340905	.	+	.	Parent=Os01t0216000-01
Chr01	irgsp1_rep	CDS	6340906	6341173	.	+	0	Parent=Os01t0216000-01
Chr01	irgsp1_rep	CDS	6341286	6341501	.	+	2	Parent=Os01t0216000-01
Chr01	irgsp1_rep	CDS	6342908	6343056	.	+	2	Parent=Os01t0216000-01
Chr01	irgsp1_rep	CDS	6343157	6343433	.	+	0	Parent=Os01t0216000-01
Chr01	irgsp1_rep	CDS	6343736	6344019	.	+	2	Parent=Os01t0216000-01
Chr01	irgsp1_rep	three_prime_UTR	6344020	6344286	.	+	.	Parent=Os01t0216000-01
Chr01	irgsp1_rep	mRNA	6340983	6343950	.	-	.	ID=Os01t0216150-00;Name=Os01t0216150-00;Locus_id=Os01g0216150;Note=Hypothetical protein.;Transcript_evidence=tplb0048c08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0216150-00
Chr01	irgsp1_rep	five_prime_UTR	6343746	6343950	.	-	.	Parent=Os01t0216150-00
Chr01	irgsp1_rep	five_prime_UTR	6343142	6343435	.	-	.	Parent=Os01t0216150-00
Chr01	irgsp1_rep	five_prime_UTR	6342906	6343042	.	-	.	Parent=Os01t0216150-00
Chr01	irgsp1_rep	five_prime_UTR	6341348	6341487	.	-	.	Parent=Os01t0216150-00
Chr01	irgsp1_rep	CDS	6341272	6341347	.	-	0	Parent=Os01t0216150-00
Chr01	irgsp1_rep	CDS	6340987	6341165	.	-	2	Parent=Os01t0216150-00
Chr01	irgsp1_rep	three_prime_UTR	6340983	6340986	.	-	.	Parent=Os01t0216150-00
Chr01	irgsp1_rep	mRNA	6352582	6358355	.	+	.	ID=Os01t0216300-01;Name=Os01t0216300-01;Locus_id=Os01g0216300;CGSNL Gene Symbol=GELP8;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 8;Oryzabase Gene Symbol Synonym(s)=OsGELP8;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 8;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK107557 (DDBJ%2C Best hit);ORF_evidence=NP_001042399.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=002-130-B05;Oryzabase=10959;Expression=AK107557;TENOR=Os01t0216300-01;KEGG=Os01t0216300-01
Chr01	irgsp1_rep	five_prime_UTR	6352582	6352749	.	+	.	Parent=Os01t0216300-01
Chr01	irgsp1_rep	five_prime_UTR	6353597	6353633	.	+	.	Parent=Os01t0216300-01
Chr01	irgsp1_rep	CDS	6353634	6353910	.	+	0	Parent=Os01t0216300-01
Chr01	irgsp1_rep	CDS	6354005	6354220	.	+	2	Parent=Os01t0216300-01
Chr01	irgsp1_rep	CDS	6354355	6354506	.	+	2	Parent=Os01t0216300-01
Chr01	irgsp1_rep	CDS	6356713	6356989	.	+	0	Parent=Os01t0216300-01
Chr01	irgsp1_rep	CDS	6357760	6357998	.	+	2	Parent=Os01t0216300-01
Chr01	irgsp1_rep	three_prime_UTR	6357999	6358355	.	+	.	Parent=Os01t0216300-01
Chr01	irgsp1_rep	mRNA	6353714	6357017	.	-	.	ID=Os01t0216350-00;Name=Os01t0216350-00;Locus_id=Os01g0216350;Note=Hypothetical protein.;Transcript_evidence=EU950608 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0216350-00
Chr01	irgsp1_rep	five_prime_UTR	6356713	6357017	.	-	.	Parent=Os01t0216350-00
Chr01	irgsp1_rep	five_prime_UTR	6354318	6354505	.	-	.	Parent=Os01t0216350-00
Chr01	irgsp1_rep	five_prime_UTR	6354067	6354189	.	-	.	Parent=Os01t0216350-00
Chr01	irgsp1_rep	CDS	6354013	6354066	.	-	0	Parent=Os01t0216350-00
Chr01	irgsp1_rep	CDS	6353714	6353891	.	-	0	Parent=Os01t0216350-00
Chr01	irgsp1_rep	mRNA	6361526	6363457	.	+	.	ID=Os01t0216400-00;Name=Os01t0216400-00;Locus_id=Os01g0216400;CGSNL Gene Symbol=GELP9;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 9;Oryzabase Gene Symbol Synonym(s)=OsGELP9;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 9;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001042399.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);Oryzabase=10960;TENOR=Os01t0216400-00;KEGG=Os01t0216400-00
Chr01	irgsp1_rep	CDS	6361526	6361802	.	+	0	Parent=Os01t0216400-00
Chr01	irgsp1_rep	CDS	6361902	6362117	.	+	2	Parent=Os01t0216400-00
Chr01	irgsp1_rep	CDS	6362231	6362379	.	+	2	Parent=Os01t0216400-00
Chr01	irgsp1_rep	CDS	6362474	6362750	.	+	0	Parent=Os01t0216400-00
Chr01	irgsp1_rep	CDS	6363228	6363457	.	+	2	Parent=Os01t0216400-00
Chr01	irgsp1_rep	mRNA	6365063	6367057	.	+	.	ID=Os01t0216500-00;Name=Os01t0216500-00;Locus_id=Os01g0216500;CGSNL Gene Symbol=GELP10;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 10;Oryzabase Gene Symbol Synonym(s)=OsGELP10;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 10;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2ZQN9 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);Oryzabase=10961;TENOR=Os01t0216500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	6365063	6365324	.	+	0	Parent=Os01t0216500-00
Chr01	irgsp1_rep	CDS	6365422	6365637	.	+	2	Parent=Os01t0216500-00
Chr01	irgsp1_rep	CDS	6365742	6365890	.	+	2	Parent=Os01t0216500-00
Chr01	irgsp1_rep	CDS	6365999	6366272	.	+	0	Parent=Os01t0216500-00
Chr01	irgsp1_rep	CDS	6366822	6367057	.	+	2	Parent=Os01t0216500-00
Chr01	irgsp1_rep	mRNA	6365099	6366237	.	-	.	ID=Os01t0216600-00;Name=Os01t0216600-00;Locus_id=Os01g0216600;Note=Hypothetical protein.;Transcript_evidence=EU950608 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0216600-00
Chr01	irgsp1_rep	five_prime_UTR	6366236	6366237	.	-	.	Parent=Os01t0216600-00
Chr01	irgsp1_rep	CDS	6365957	6366235	.	-	0	Parent=Os01t0216600-00
Chr01	irgsp1_rep	CDS	6365765	6365839	.	-	0	Parent=Os01t0216600-00
Chr01	irgsp1_rep	three_prime_UTR	6365728	6365764	.	-	.	Parent=Os01t0216600-00
Chr01	irgsp1_rep	three_prime_UTR	6365383	6365618	.	-	.	Parent=Os01t0216600-00
Chr01	irgsp1_rep	three_prime_UTR	6365099	6365265	.	-	.	Parent=Os01t0216600-00
Chr01	irgsp1_rep	mRNA	6374207	6381837	.	+	.	ID=Os01t0216900-00;Name=Os01t0216900-00;Locus_id=Os01g0216900;CGSNL Gene Symbol=GELP11;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 11;Oryzabase Gene Symbol Synonym(s)=OsGELP11;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 11;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=BT042880 (DDBJ);ORF_evidence=NP_001172233.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);Oryzabase=10962;TENOR=Os01t0216900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	6374207	6374440	.	+	0	Parent=Os01t0216900-00
Chr01	irgsp1_rep	CDS	6377366	6377501	.	+	0	Parent=Os01t0216900-00
Chr01	irgsp1_rep	CDS	6377631	6377849	.	+	2	Parent=Os01t0216900-00
Chr01	irgsp1_rep	CDS	6377942	6378090	.	+	2	Parent=Os01t0216900-00
Chr01	irgsp1_rep	CDS	6378240	6378513	.	+	0	Parent=Os01t0216900-00
Chr01	irgsp1_rep	CDS	6381605	6381837	.	+	2	Parent=Os01t0216900-00
Chr01	irgsp1_rep	mRNA	6377363	6381819	.	-	.	ID=Os01t0216951-00;Name=Os01t0216951-00;Locus_id=Os01g0216951;Note=Non-protein coding transcript.;Transcript_evidence=tplb0048c08 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os01t0216951-00
Chr01	irgsp1_rep	exon	6381594	6381819	.	-	.	Parent=Os01t0216951-00
Chr01	irgsp1_rep	exon	6378221	6378487	.	-	.	Parent=Os01t0216951-00
Chr01	irgsp1_rep	exon	6377969	6378074	.	-	.	Parent=Os01t0216951-00
Chr01	irgsp1_rep	exon	6377624	6377866	.	-	.	Parent=Os01t0216951-00
Chr01	irgsp1_rep	exon	6377363	6377529	.	-	.	Parent=Os01t0216951-00
Chr01	irgsp1_rep	mRNA	6387691	6391467	.	-	.	ID=Os01t0217000-01;Name=Os01t0217000-01;Locus_id=Os01g0217000;Oryzabase Gene Symbol Synonym(s)=OsTBL19%2C TBL19;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 19;Note=Protein of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=AK070775 (DDBJ%2C Best hit);ORF_evidence=A8Y5V3 (UniProt);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=J023072A02;Oryzabase=21474;Expression=AK070775;TENOR=Os01t0217000-01;KEGG=Os01t0217000-01
Chr01	irgsp1_rep	five_prime_UTR	6391312	6391467	.	-	.	Parent=Os01t0217000-01
Chr01	irgsp1_rep	CDS	6391259	6391311	.	-	0	Parent=Os01t0217000-01
Chr01	irgsp1_rep	CDS	6390565	6390879	.	-	1	Parent=Os01t0217000-01
Chr01	irgsp1_rep	CDS	6390293	6390476	.	-	1	Parent=Os01t0217000-01
Chr01	irgsp1_rep	CDS	6388925	6389100	.	-	0	Parent=Os01t0217000-01
Chr01	irgsp1_rep	CDS	6388685	6388843	.	-	1	Parent=Os01t0217000-01
Chr01	irgsp1_rep	CDS	6388000	6388300	.	-	1	Parent=Os01t0217000-01
Chr01	irgsp1_rep	three_prime_UTR	6387691	6387999	.	-	.	Parent=Os01t0217000-01
Chr01	irgsp1_rep	mRNA	6387860	6390995	.	-	.	ID=Os01t0217000-02;Name=Os01t0217000-02;Locus_id=Os01g0217000;Oryzabase Gene Symbol Synonym(s)=OsTBL19%2C TBL19;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 19;Note=Similar to Alpha galactosidase.;Transcript_evidence=AK105803 (DDBJ%2C Best hit);ORF_evidence=A8Y5V3 (UniProt);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=001-203-B01;Oryzabase=21474;Expression=AK105803;TENOR=Os01t0217000-02;KEGG=Os01t0217000-02
Chr01	irgsp1_rep	five_prime_UTR	6390876	6390995	.	-	.	Parent=Os01t0217000-02
Chr01	irgsp1_rep	CDS	6390565	6390875	.	-	0	Parent=Os01t0217000-02
Chr01	irgsp1_rep	CDS	6390293	6390476	.	-	1	Parent=Os01t0217000-02
Chr01	irgsp1_rep	CDS	6388925	6389100	.	-	0	Parent=Os01t0217000-02
Chr01	irgsp1_rep	CDS	6388685	6388843	.	-	1	Parent=Os01t0217000-02
Chr01	irgsp1_rep	CDS	6388000	6388300	.	-	1	Parent=Os01t0217000-02
Chr01	irgsp1_rep	three_prime_UTR	6387860	6387999	.	-	.	Parent=Os01t0217000-02
Chr01	irgsp1_rep	mRNA	6388780	6390920	.	+	.	ID=Os01t0217050-00;Name=Os01t0217050-00;Locus_id=Os01g0217050;Note=Hypothetical protein.;Transcript_evidence=BT084838 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0217050-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	6388780	6389167	.	+	.	Parent=Os01t0217050-00
Chr01	irgsp1_rep	CDS	6389168	6389169	.	+	0	Parent=Os01t0217050-00
Chr01	irgsp1_rep	CDS	6390287	6390917	.	+	1	Parent=Os01t0217050-00
Chr01	irgsp1_rep	three_prime_UTR	6390918	6390920	.	+	.	Parent=Os01t0217050-00
Chr01	irgsp1_rep	mRNA	6394270	6395665	.	+	.	ID=Os01t0217100-01;Name=Os01t0217100-01;Locus_id=Os01g0217100;Note=Conserved hypothetical protein.;Transcript_evidence=AK099424 (DDBJ%2C Best hit);ORF_evidence=NP_001053691.1 (RefSeq);NIAS_FLcDNA=J013008N09;Expression=AK099424;TENOR=Os01t0217100-01;KEGG=Os01t0217100-01
Chr01	irgsp1_rep	five_prime_UTR	6394270	6394488	.	+	.	Parent=Os01t0217100-01
Chr01	irgsp1_rep	CDS	6394489	6394615	.	+	0	Parent=Os01t0217100-01
Chr01	irgsp1_rep	CDS	6394993	6395417	.	+	2	Parent=Os01t0217100-01
Chr01	irgsp1_rep	three_prime_UTR	6395418	6395665	.	+	.	Parent=Os01t0217100-01
Chr01	irgsp1_rep	mRNA	6402871	6405410	.	-	.	ID=Os01t0217400-00;Name=Os01t0217400-00;Locus_id=Os01g0217400;Note=Conserved hypothetical protein.;Transcript_evidence=AK371037 (DDBJ);ORF_evidence=B9EU34 (UniProt);TENOR=Os01t0217400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	6405367	6405410	.	-	.	Parent=Os01t0217400-00
Chr01	irgsp1_rep	CDS	6405286	6405366	.	-	0	Parent=Os01t0217400-00
Chr01	irgsp1_rep	CDS	6404835	6405164	.	-	0	Parent=Os01t0217400-00
Chr01	irgsp1_rep	CDS	6404473	6404577	.	-	0	Parent=Os01t0217400-00
Chr01	irgsp1_rep	three_prime_UTR	6404323	6404472	.	-	.	Parent=Os01t0217400-00
Chr01	irgsp1_rep	three_prime_UTR	6403834	6403966	.	-	.	Parent=Os01t0217400-00
Chr01	irgsp1_rep	three_prime_UTR	6403542	6403708	.	-	.	Parent=Os01t0217400-00
Chr01	irgsp1_rep	three_prime_UTR	6402871	6403133	.	-	.	Parent=Os01t0217400-00
Chr01	irgsp1_rep	mRNA	6412786	6419867	.	+	.	ID=Os01t0217500-01;Name=Os01t0217500-01;Locus_id=Os01g0217500;Oryzabase Gene Symbol Synonym(s)=OsDJ-1A%2C DJ-1A;Oryzabase Gene Name Synonym(s)=DJ-1/PfpI domain containing protein A%2C DJ-1 protein A;Note=ThiJ/PfpI domain containing protein.;Transcript_evidence=AK063270 (DDBJ%2C Best hit);ORF_evidence=B8AAK4 (UniProt);InterPro=ThiJ/PfpI (IPR002818),DJ-1 (IPR006287);NIAS_FLcDNA=001-113-B10;Oryzabase=20912;Expression=AK063270;TENOR=Os01t0217500-01;KEGG=Os01t0217500-01
Chr01	irgsp1_rep	five_prime_UTR	6412786	6412898	.	+	.	Parent=Os01t0217500-01
Chr01	irgsp1_rep	CDS	6412899	6412931	.	+	0	Parent=Os01t0217500-01
Chr01	irgsp1_rep	CDS	6413001	6413210	.	+	0	Parent=Os01t0217500-01
Chr01	irgsp1_rep	CDS	6413302	6413451	.	+	0	Parent=Os01t0217500-01
Chr01	irgsp1_rep	CDS	6414787	6414969	.	+	0	Parent=Os01t0217500-01
Chr01	irgsp1_rep	CDS	6418705	6418779	.	+	0	Parent=Os01t0217500-01
Chr01	irgsp1_rep	CDS	6418959	6419173	.	+	0	Parent=Os01t0217500-01
Chr01	irgsp1_rep	CDS	6419277	6419418	.	+	1	Parent=Os01t0217500-01
Chr01	irgsp1_rep	CDS	6419515	6419694	.	+	0	Parent=Os01t0217500-01
Chr01	irgsp1_rep	three_prime_UTR	6419695	6419867	.	+	.	Parent=Os01t0217500-01
Chr01	irgsp1_rep	mRNA	6432336	6435651	.	+	.	ID=Os01t0217800-01;Name=Os01t0217800-01;Locus_id=Os01g0217800;Oryzabase Gene Symbol Synonym(s)=OsDJ-1B%2C DJ-1B;Oryzabase Gene Name Synonym(s)=DJ-1/PfpI domain containing protein B%2C DJ-1 protein B;Note=ThiJ/PfpI domain containing protein.;Transcript_evidence=AK100463 (DDBJ%2C Best hit);ORF_evidence=B6TVM7 (UniProt);InterPro=ThiJ/PfpI (IPR002818),DJ-1 (IPR006287);NIAS_FLcDNA=J023092A20;Oryzabase=20913;Expression=AK100463;TENOR=Os01t0217800-01;KEGG=Os01t0217800-01
Chr01	irgsp1_rep	five_prime_UTR	6432336	6432590	.	+	.	Parent=Os01t0217800-01
Chr01	irgsp1_rep	CDS	6432591	6432917	.	+	0	Parent=Os01t0217800-01
Chr01	irgsp1_rep	CDS	6433356	6433505	.	+	0	Parent=Os01t0217800-01
Chr01	irgsp1_rep	CDS	6433614	6433796	.	+	0	Parent=Os01t0217800-01
Chr01	irgsp1_rep	CDS	6434305	6434385	.	+	0	Parent=Os01t0217800-01
Chr01	irgsp1_rep	CDS	6434646	6434849	.	+	0	Parent=Os01t0217800-01
Chr01	irgsp1_rep	CDS	6434933	6435073	.	+	0	Parent=Os01t0217800-01
Chr01	irgsp1_rep	CDS	6435270	6435470	.	+	0	Parent=Os01t0217800-01
Chr01	irgsp1_rep	three_prime_UTR	6435471	6435651	.	+	.	Parent=Os01t0217800-01
Chr01	irgsp1_rep	mRNA	6444246	6456068	.	+	.	ID=Os01t0218032-01;Name=Os01t0218032-01;Locus_id=Os01g0218032;RAP-DB Gene Symbol Synonym(s)=ROS1A%2C ROS1a%2C OsROS1%2C TA2;RAP-DB Gene Name Synonym(s)=REPRESSOR OF SILENCING 1a%2C thick aleurone 2;CGSNL Gene Symbol=TA2;CGSNL Gene Name=THICK ALEURONE 2;Oryzabase Gene Symbol Synonym(s)=ROS1A%2C ROS1a%2C DME1%2C OsROS1A%2C OsROS1%2C ROS1%2C mOsROS1;Oryzabase Gene Name Synonym(s)=REPRESSOR OF SILENCING 1a%2C REPRESSOR OF SILENCING 1%2C thick aleurone 2;Note=Putative DNA demethylase%2C Endosperm development;Transcript_evidence=Inferred from literature;ORF_evidence=B8AAK8;GO=Biological Process: DNA repair (GO:0006281),Biological Process: base-excision repair (GO:0006284),Molecular Function: catalytic activity (GO:0003824),Molecular Function: 4 iron%2C 4 sulfur cluster binding (GO:0051539);InterPro=DNA glycosylase (IPR011257),HhH-GPD domain (IPR003265),Helix-turn-helix%2C base-excision DNA repair%2C C-terminal (IPR023170),Permuted single zf-CXXC unit (IPR028924),Demeter%2C RRM-fold domain (IPR028925),Endonuclease III-like%2C iron-sulphur cluster loop motif (IPR003651);Manual Curation=December 13%2C 2018;Literature_PMID=30275307,22448681;Oryzabase=12349;TENOR=Os01t0218032-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	6444246	6444318	.	+	.	Parent=Os01t0218032-01
Chr01	irgsp1_rep	CDS	6444319	6447085	.	+	0	Parent=Os01t0218032-01
Chr01	irgsp1_rep	CDS	6447317	6447407	.	+	2	Parent=Os01t0218032-01
Chr01	irgsp1_rep	CDS	6447502	6449017	.	+	1	Parent=Os01t0218032-01
Chr01	irgsp1_rep	CDS	6449164	6449243	.	+	0	Parent=Os01t0218032-01
Chr01	irgsp1_rep	CDS	6450045	6450129	.	+	1	Parent=Os01t0218032-01
Chr01	irgsp1_rep	CDS	6450221	6450312	.	+	0	Parent=Os01t0218032-01
Chr01	irgsp1_rep	CDS	6450388	6450456	.	+	1	Parent=Os01t0218032-01
Chr01	irgsp1_rep	CDS	6450544	6450580	.	+	1	Parent=Os01t0218032-01
Chr01	irgsp1_rep	CDS	6450662	6450744	.	+	0	Parent=Os01t0218032-01
Chr01	irgsp1_rep	CDS	6451427	6451873	.	+	1	Parent=Os01t0218032-01
Chr01	irgsp1_rep	CDS	6451978	6452014	.	+	1	Parent=Os01t0218032-01
Chr01	irgsp1_rep	CDS	6452101	6452158	.	+	0	Parent=Os01t0218032-01
Chr01	irgsp1_rep	CDS	6452243	6452382	.	+	2	Parent=Os01t0218032-01
Chr01	irgsp1_rep	CDS	6452610	6452675	.	+	0	Parent=Os01t0218032-01
Chr01	irgsp1_rep	CDS	6452794	6452908	.	+	0	Parent=Os01t0218032-01
Chr01	irgsp1_rep	CDS	6454261	6454299	.	+	2	Parent=Os01t0218032-01
Chr01	irgsp1_rep	CDS	6455325	6455461	.	+	2	Parent=Os01t0218032-01
Chr01	irgsp1_rep	three_prime_UTR	6455462	6456068	.	+	.	Parent=Os01t0218032-01
Chr01	irgsp1_rep	mRNA	6462770	6465035	.	+	.	ID=Os01t0218100-01;Name=Os01t0218100-01;Locus_id=Os01g0218100;Oryzabase Gene Symbol Synonym(s)=OsbHLH037%2C bHLH037;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 037;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=AK068593 (DDBJ%2C Best hit);ORF_evidence=A2WM43 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J013152L23;Oryzabase=15328;Expression=AK068593;TENOR=Os01t0218100-01;KEGG=Os01t0218100-01
Chr01	irgsp1_rep	five_prime_UTR	6462770	6463701	.	+	.	Parent=Os01t0218100-01
Chr01	irgsp1_rep	CDS	6463702	6464028	.	+	0	Parent=Os01t0218100-01
Chr01	irgsp1_rep	CDS	6464207	6464683	.	+	0	Parent=Os01t0218100-01
Chr01	irgsp1_rep	three_prime_UTR	6464684	6465035	.	+	.	Parent=Os01t0218100-01
Chr01	irgsp1_rep	mRNA	6471789	6476664	.	+	.	ID=Os01t0218200-00;Name=Os01t0218200-00;Locus_id=Os01g0218200;Note=Thioredoxin domain 2 containing protein.;Transcript_evidence=AK371344 (DDBJ);ORF_evidence=B6U8P1 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide TPR-1 (IPR001440),Tetratricopeptide-like helical (IPR011990),Thioredoxin-like fold (IPR012336),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide TPR2 (IPR013105),Thioredoxin domain (IPR013766),Tetratricopeptide repeat (IPR019734);TENOR=Os01t0218200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	6471789	6472031	.	+	.	Parent=Os01t0218200-00
Chr01	irgsp1_rep	CDS	6472032	6472870	.	+	0	Parent=Os01t0218200-00
Chr01	irgsp1_rep	CDS	6473490	6473685	.	+	1	Parent=Os01t0218200-00
Chr01	irgsp1_rep	CDS	6473772	6473956	.	+	0	Parent=Os01t0218200-00
Chr01	irgsp1_rep	CDS	6474206	6474539	.	+	1	Parent=Os01t0218200-00
Chr01	irgsp1_rep	CDS	6474629	6474833	.	+	0	Parent=Os01t0218200-00
Chr01	irgsp1_rep	CDS	6475927	6476033	.	+	2	Parent=Os01t0218200-00
Chr01	irgsp1_rep	CDS	6476117	6476269	.	+	0	Parent=Os01t0218200-00
Chr01	irgsp1_rep	three_prime_UTR	6476270	6476664	.	+	.	Parent=Os01t0218200-00
Chr01	irgsp1_rep	mRNA	6471818	6476650	.	-	.	ID=Os01t0218350-00;Name=Os01t0218350-00;Locus_id=Os01g0218350;Note=Hypothetical protein.;Transcript_evidence=tplb0021m04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0218350-00
Chr01	irgsp1_rep	five_prime_UTR	6476113	6476650	.	-	.	Parent=Os01t0218350-00
Chr01	irgsp1_rep	five_prime_UTR	6475910	6476027	.	-	.	Parent=Os01t0218350-00
Chr01	irgsp1_rep	five_prime_UTR	6474627	6474818	.	-	.	Parent=Os01t0218350-00
Chr01	irgsp1_rep	five_prime_UTR	6474204	6474537	.	-	.	Parent=Os01t0218350-00
Chr01	irgsp1_rep	five_prime_UTR	6473763	6473954	.	-	.	Parent=Os01t0218350-00
Chr01	irgsp1_rep	five_prime_UTR	6473480	6473677	.	-	.	Parent=Os01t0218350-00
Chr01	irgsp1_rep	five_prime_UTR	6472418	6472859	.	-	.	Parent=Os01t0218350-00
Chr01	irgsp1_rep	CDS	6472016	6472417	.	-	0	Parent=Os01t0218350-00
Chr01	irgsp1_rep	three_prime_UTR	6471818	6472015	.	-	.	Parent=Os01t0218350-00
Chr01	irgsp1_rep	mRNA	6494446	6497781	.	+	.	ID=Os01t0218500-01;Name=Os01t0218500-01;Locus_id=Os01g0218500;CGSNL Gene Symbol=FTL1;CGSNL Gene Name=FLOWERING TIME LIKE GENE 1;Oryzabase Gene Symbol Synonym(s)=FTL%2C FT-L1%2C OsFTL1%2C FTL1;Oryzabase Gene Name Synonym(s)=FT-like gene 1;Note=Similar to ZCN14 protein.;Transcript_evidence=AK100491 (DDBJ%2C Best hit);ORF_evidence=NP_001106251.1 (RefSeq);InterPro=Phosphatidylethanolamine-binding%2C conserved site (IPR001858),Phosphatidylethanolamine-binding protein PEBP (IPR008914);NIAS_FLcDNA=J023098H12;Oryzabase=11225;Expression=AK100491;TENOR=Os01t0218500-01;KEGG=Os01t0218500-01
Chr01	irgsp1_rep	five_prime_UTR	6494446	6494610	.	+	.	Parent=Os01t0218500-01
Chr01	irgsp1_rep	CDS	6494611	6494651	.	+	0	Parent=Os01t0218500-01
Chr01	irgsp1_rep	CDS	6494938	6495100	.	+	1	Parent=Os01t0218500-01
Chr01	irgsp1_rep	CDS	6495195	6495260	.	+	0	Parent=Os01t0218500-01
Chr01	irgsp1_rep	three_prime_UTR	6495261	6497781	.	+	.	Parent=Os01t0218500-01
Chr01	irgsp1_rep	mRNA	6494516	6499766	.	+	.	ID=Os01t0218500-02;Name=Os01t0218500-02;Locus_id=Os01g0218500;RAP-DB Gene Symbol Synonym(s)=OsFTL1;RAP-DB Gene Name Synonym(s)=FT-Like homolog;CGSNL Gene Symbol=FTL1;CGSNL Gene Name=FLOWERING TIME LIKE GENE 1;Oryzabase Gene Symbol Synonym(s)=FTL%2C FT-L1%2C OsFTL1%2C FTL1;Oryzabase Gene Name Synonym(s)=FT-like gene 1;Note=FLOWERING LOCUS T (FT)-Like homolog%2C FT-Like1 homologous to Arabidopsis Flowering Locus T gene%2C Promotion of flowering;Transcript_evidence=AK072979;ORF_evidence=Q5QNE3;GO=Biological Process: regulation of flower development (GO:0009909),Biological Process: photoperiodism%2C flowering (GO:0048573),Molecular Function: phosphatidylethanolamine binding (GO:0008429);InterPro=Phosphatidylethanolamine-binding protein (IPR008914),Protein FLOWERING LOCUS T (IPR031095),Phosphatidylethanolamine-binding%2C conserved site (IPR001858);NIAS_FLcDNA=J023149H16;Manual Curation=July 5%2C 2017;Literature_PMID=21830109,17339225,12154129;Oryzabase=11225;Expression=AK072979;TENOR=Os01t0218500-02
Chr01	irgsp1_rep	five_prime_UTR	6494516	6494596	.	+	.	Parent=Os01t0218500-02
Chr01	irgsp1_rep	CDS	6494597	6495100	.	+	0	Parent=Os01t0218500-02
Chr01	irgsp1_rep	CDS	6495195	6495256	.	+	0	Parent=Os01t0218500-02
Chr01	irgsp1_rep	CDS	6499047	6499087	.	+	1	Parent=Os01t0218500-02
Chr01	irgsp1_rep	CDS	6499218	6499441	.	+	2	Parent=Os01t0218500-02
Chr01	irgsp1_rep	three_prime_UTR	6499442	6499766	.	+	.	Parent=Os01t0218500-02
Chr01	irgsp1_rep	mRNA	6494583	6495668	.	+	.	ID=Os01t0218500-03;Name=Os01t0218500-03;Locus_id=Os01g0218500;CGSNL Gene Symbol=FTL1;CGSNL Gene Name=FLOWERING TIME LIKE GENE 1;Oryzabase Gene Symbol Synonym(s)=FTL%2C FT-L1%2C OsFTL1%2C FTL1;Oryzabase Gene Name Synonym(s)=FT-like gene 1;Note=Similar to ZCN14 protein.;Transcript_evidence=AK108673 (DDBJ%2C Best hit);ORF_evidence=NP_001106251.1 (RefSeq);InterPro=Phosphatidylethanolamine-binding%2C conserved site (IPR001858),Phosphatidylethanolamine-binding protein PEBP (IPR008914);NIAS_FLcDNA=002-148-H11;Oryzabase=11225;Expression=AK108673;TENOR=Os01t0218500-03;KEGG=Os01t0218500-03
Chr01	irgsp1_rep	five_prime_UTR	6494583	6494596	.	+	.	Parent=Os01t0218500-03
Chr01	irgsp1_rep	CDS	6494597	6495100	.	+	0	Parent=Os01t0218500-03
Chr01	irgsp1_rep	CDS	6495195	6495260	.	+	0	Parent=Os01t0218500-03
Chr01	irgsp1_rep	three_prime_UTR	6495261	6495668	.	+	.	Parent=Os01t0218500-03
Chr01	irgsp1_rep	mRNA	6495257	6497781	.	+	.	ID=Os01t0218500-04;Name=Os01t0218500-04;Locus_id=Os01g0218500;CGSNL Gene Symbol=FTL1;CGSNL Gene Name=FLOWERING TIME LIKE GENE 1;Oryzabase Gene Symbol Synonym(s)=FTL%2C FT-L1%2C OsFTL1%2C FTL1;Oryzabase Gene Name Synonym(s)=FT-like gene 1;Note=Non-protein coding transcript.;Transcript_evidence=AK100648 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023110N05;Oryzabase=11225;TENOR=Os01t0218500-04
Chr01	irgsp1_rep	exon	6495257	6497781	.	+	.	Parent=Os01t0218500-04
Chr01	irgsp1_rep	mRNA	6500709	6507086	.	-	.	ID=Os01t0218700-01;Name=Os01t0218700-01;Locus_id=Os01g0218700;CGSNL Gene Symbol=ABCD1;CGSNL Gene Name=ABC TRANSPORTER D FAMILY MEMBER 1;Oryzabase Gene Symbol Synonym(s)=OsABCD1%2C OsABCD1_1%2C OsABCD1_2;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCD subgroup member 1;Note=ABC transporter integral membrane type 1 domain containing protein.;Transcript_evidence=AK064992 (DDBJ%2C Best hit);ORF_evidence=XP_002315097.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C N-terminal (IPR010509),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);NIAS_FLcDNA=J013001D15;Oryzabase=11969;Expression=AK064992;TENOR=Os01t0218700-01;KEGG=Os01t0218700-01
Chr01	irgsp1_rep	five_prime_UTR	6506994	6507086	.	-	.	Parent=Os01t0218700-01
Chr01	irgsp1_rep	CDS	6506679	6506993	.	-	0	Parent=Os01t0218700-01
Chr01	irgsp1_rep	CDS	6505748	6505934	.	-	0	Parent=Os01t0218700-01
Chr01	irgsp1_rep	CDS	6505333	6505400	.	-	2	Parent=Os01t0218700-01
Chr01	irgsp1_rep	CDS	6504279	6504605	.	-	0	Parent=Os01t0218700-01
Chr01	irgsp1_rep	CDS	6504020	6504184	.	-	0	Parent=Os01t0218700-01
Chr01	irgsp1_rep	CDS	6503229	6503457	.	-	0	Parent=Os01t0218700-01
Chr01	irgsp1_rep	CDS	6502915	6503156	.	-	2	Parent=Os01t0218700-01
Chr01	irgsp1_rep	CDS	6502494	6502815	.	-	0	Parent=Os01t0218700-01
Chr01	irgsp1_rep	CDS	6501610	6501875	.	-	2	Parent=Os01t0218700-01
Chr01	irgsp1_rep	CDS	6501139	6501333	.	-	0	Parent=Os01t0218700-01
Chr01	irgsp1_rep	three_prime_UTR	6500709	6501138	.	-	.	Parent=Os01t0218700-01
Chr01	irgsp1_rep	mRNA	6500709	6502533	.	-	.	ID=Os01t0218700-02;Name=Os01t0218700-02;Locus_id=Os01g0218700;CGSNL Gene Symbol=ABCD1;CGSNL Gene Name=ABC TRANSPORTER D FAMILY MEMBER 1;Oryzabase Gene Symbol Synonym(s)=OsABCD1%2C OsABCD1_1%2C OsABCD1_2;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCD subgroup member 1;Note=Similar to peroxisomal membrane ABC transporter family%2C PMP family.;Transcript_evidence=AK063157 (DDBJ%2C Best hit);ORF_evidence=XP_002315097.1 (RefSeq);GO=Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887);InterPro=ABC transporter-like (IPR003439);NIAS_FLcDNA=001-043-C09;Oryzabase=11969;Expression=AK063157;TENOR=Os01t0218700-02;KEGG=Os01t0218700-02
Chr01	irgsp1_rep	CDS	6502494	6502533	.	-	0	Parent=Os01t0218700-02
Chr01	irgsp1_rep	CDS	6501610	6501875	.	-	2	Parent=Os01t0218700-02
Chr01	irgsp1_rep	CDS	6501139	6501333	.	-	0	Parent=Os01t0218700-02
Chr01	irgsp1_rep	three_prime_UTR	6500709	6501138	.	-	.	Parent=Os01t0218700-02
Chr01	irgsp1_rep	mRNA	6507368	6514640	.	-	.	ID=Os01t0218800-01;Name=Os01t0218800-01;Locus_id=Os01g0218800;RAP-DB Gene Symbol Synonym(s)=SDG721;RAP-DB Gene Name Synonym(s)=SET-domain group protein 721;Oryzabase Gene Symbol Synonym(s)=OsSET1%2C SDG721;Oryzabase Gene Name Synonym(s)=SET protein 1;Note=TRITHORAX-like protein%2C Regulation of H3K4 methylation%2C Regulation of plant height and pollen grain development;Transcript_evidence=AK120836;ORF_evidence=Q0JPK0;GO=Molecular Function: protein binding (GO:0005515);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C FYVE/PHD-type (IPR011011),Histone-lysine N-methyltransferase ATX (IPR025780),PWWP domain (IPR000313),Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C PHD-finger (IPR019787),Extended PHD (ePHD) domain (IPR034732),ATX3/4/5%2C PHD domain (IPR042011),SET domain (IPR001214),Post-SET domain (IPR003616),Zinc finger%2C PHD-type%2C conserved site (IPR019786);NIAS_FLcDNA=J023020K07;Manual Curation=April 14%2C 2020;Literature_PMID=29473711;Oryzabase=13370;TENOR=Os01t0218800-01
Chr01	irgsp1_rep	five_prime_UTR	6514553	6514640	.	-	.	Parent=Os01t0218800-01
Chr01	irgsp1_rep	CDS	6513818	6514552	.	-	0	Parent=Os01t0218800-01
Chr01	irgsp1_rep	CDS	6513545	6513600	.	-	0	Parent=Os01t0218800-01
Chr01	irgsp1_rep	CDS	6513241	6513448	.	-	1	Parent=Os01t0218800-01
Chr01	irgsp1_rep	CDS	6513034	6513147	.	-	0	Parent=Os01t0218800-01
Chr01	irgsp1_rep	CDS	6512868	6512936	.	-	0	Parent=Os01t0218800-01
Chr01	irgsp1_rep	CDS	6512698	6512763	.	-	0	Parent=Os01t0218800-01
Chr01	irgsp1_rep	CDS	6512484	6512578	.	-	0	Parent=Os01t0218800-01
Chr01	irgsp1_rep	CDS	6512298	6512387	.	-	1	Parent=Os01t0218800-01
Chr01	irgsp1_rep	CDS	6511734	6511869	.	-	1	Parent=Os01t0218800-01
Chr01	irgsp1_rep	CDS	6511521	6511596	.	-	0	Parent=Os01t0218800-01
Chr01	irgsp1_rep	CDS	6511335	6511437	.	-	2	Parent=Os01t0218800-01
Chr01	irgsp1_rep	CDS	6511100	6511224	.	-	1	Parent=Os01t0218800-01
Chr01	irgsp1_rep	CDS	6510726	6510871	.	-	2	Parent=Os01t0218800-01
Chr01	irgsp1_rep	CDS	6510502	6510606	.	-	0	Parent=Os01t0218800-01
Chr01	irgsp1_rep	CDS	6510113	6510177	.	-	0	Parent=Os01t0218800-01
Chr01	irgsp1_rep	CDS	6509585	6509783	.	-	1	Parent=Os01t0218800-01
Chr01	irgsp1_rep	CDS	6508906	6508992	.	-	0	Parent=Os01t0218800-01
Chr01	irgsp1_rep	CDS	6508759	6508815	.	-	0	Parent=Os01t0218800-01
Chr01	irgsp1_rep	CDS	6508593	6508682	.	-	0	Parent=Os01t0218800-01
Chr01	irgsp1_rep	CDS	6508359	6508445	.	-	0	Parent=Os01t0218800-01
Chr01	irgsp1_rep	CDS	6508110	6508184	.	-	0	Parent=Os01t0218800-01
Chr01	irgsp1_rep	CDS	6507919	6508019	.	-	0	Parent=Os01t0218800-01
Chr01	irgsp1_rep	CDS	6507700	6507790	.	-	1	Parent=Os01t0218800-01
Chr01	irgsp1_rep	three_prime_UTR	6507368	6507699	.	-	.	Parent=Os01t0218800-01
Chr01	irgsp1_rep	mRNA	6507356	6513979	.	-	.	ID=Os01t0218800-02;Name=Os01t0218800-02;Locus_id=Os01g0218800;Oryzabase Gene Symbol Synonym(s)=OsSET1%2C SDG721;Oryzabase Gene Name Synonym(s)=SET protein 1;Note=Similar to SET domain protein.;Transcript_evidence=AK103664 (DDBJ%2C Best hit);ORF_evidence=XP_002318412.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=PWWP (IPR000313),SET domain (IPR001214),Zinc finger%2C PHD-type (IPR001965),Post-SET domain (IPR003616),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-type%2C conserved site (IPR019786),Zinc finger%2C PHD-finger (IPR019787);NIAS_FLcDNA=J033135J09;Oryzabase=13370;TENOR=Os01t0218800-02
Chr01	irgsp1_rep	CDS	6513818	6513979	.	-	0	Parent=Os01t0218800-02
Chr01	irgsp1_rep	CDS	6513545	6513600	.	-	0	Parent=Os01t0218800-02
Chr01	irgsp1_rep	CDS	6513241	6513448	.	-	1	Parent=Os01t0218800-02
Chr01	irgsp1_rep	CDS	6513034	6513147	.	-	0	Parent=Os01t0218800-02
Chr01	irgsp1_rep	CDS	6512868	6512936	.	-	0	Parent=Os01t0218800-02
Chr01	irgsp1_rep	CDS	6512698	6512763	.	-	0	Parent=Os01t0218800-02
Chr01	irgsp1_rep	CDS	6512484	6512578	.	-	0	Parent=Os01t0218800-02
Chr01	irgsp1_rep	CDS	6512298	6512387	.	-	1	Parent=Os01t0218800-02
Chr01	irgsp1_rep	CDS	6511734	6511869	.	-	1	Parent=Os01t0218800-02
Chr01	irgsp1_rep	CDS	6511521	6511596	.	-	0	Parent=Os01t0218800-02
Chr01	irgsp1_rep	CDS	6511335	6511437	.	-	2	Parent=Os01t0218800-02
Chr01	irgsp1_rep	CDS	6511100	6511224	.	-	1	Parent=Os01t0218800-02
Chr01	irgsp1_rep	CDS	6510726	6510871	.	-	2	Parent=Os01t0218800-02
Chr01	irgsp1_rep	CDS	6510502	6510606	.	-	0	Parent=Os01t0218800-02
Chr01	irgsp1_rep	CDS	6510113	6510177	.	-	0	Parent=Os01t0218800-02
Chr01	irgsp1_rep	CDS	6509585	6509783	.	-	1	Parent=Os01t0218800-02
Chr01	irgsp1_rep	CDS	6508906	6508992	.	-	0	Parent=Os01t0218800-02
Chr01	irgsp1_rep	CDS	6508759	6508815	.	-	0	Parent=Os01t0218800-02
Chr01	irgsp1_rep	CDS	6508593	6508682	.	-	0	Parent=Os01t0218800-02
Chr01	irgsp1_rep	CDS	6508359	6508445	.	-	0	Parent=Os01t0218800-02
Chr01	irgsp1_rep	CDS	6508110	6508184	.	-	0	Parent=Os01t0218800-02
Chr01	irgsp1_rep	CDS	6507919	6508019	.	-	0	Parent=Os01t0218800-02
Chr01	irgsp1_rep	CDS	6507700	6507790	.	-	1	Parent=Os01t0218800-02
Chr01	irgsp1_rep	three_prime_UTR	6507356	6507699	.	-	.	Parent=Os01t0218800-02
Chr01	irgsp1_rep	mRNA	6518152	6521026	.	-	.	ID=Os01t0218900-01;Name=Os01t0218900-01;Locus_id=Os01g0218900;Note=Zinc finger%2C PHD-type domain containing protein.;Transcript_evidence=AK065476 (DDBJ%2C Best hit);ORF_evidence=B8AAL1 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=PWWP (IPR000313),Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-finger (IPR019787);NIAS_FLcDNA=J013022D13;Expression=AK065476;TENOR=Os01t0218900-01;KEGG=Os01t0218900-01
Chr01	irgsp1_rep	five_prime_UTR	6520690	6521026	.	-	.	Parent=Os01t0218900-01
Chr01	irgsp1_rep	CDS	6520048	6520689	.	-	0	Parent=Os01t0218900-01
Chr01	irgsp1_rep	CDS	6519598	6519653	.	-	0	Parent=Os01t0218900-01
Chr01	irgsp1_rep	CDS	6519319	6519526	.	-	1	Parent=Os01t0218900-01
Chr01	irgsp1_rep	CDS	6519104	6519214	.	-	0	Parent=Os01t0218900-01
Chr01	irgsp1_rep	CDS	6518938	6519006	.	-	0	Parent=Os01t0218900-01
Chr01	irgsp1_rep	CDS	6518762	6518827	.	-	0	Parent=Os01t0218900-01
Chr01	irgsp1_rep	CDS	6518599	6518664	.	-	0	Parent=Os01t0218900-01
Chr01	irgsp1_rep	three_prime_UTR	6518152	6518598	.	-	.	Parent=Os01t0218900-01
Chr01	irgsp1_rep	mRNA	6523644	6524609	.	+	.	ID=Os01t0219000-00;Name=Os01t0219000-00;Locus_id=Os01g0219000;Note=Conserved hypothetical protein.;Transcript_evidence=CT835018 (DDBJ%2C Best hit);ORF_evidence=NP_001042416.1 (RefSeq);TENOR=Os01t0219000-00;KEGG=Os01t0219000-00
Chr01	irgsp1_rep	five_prime_UTR	6523644	6523708	.	+	.	Parent=Os01t0219000-00
Chr01	irgsp1_rep	CDS	6523709	6524452	.	+	0	Parent=Os01t0219000-00
Chr01	irgsp1_rep	three_prime_UTR	6524453	6524609	.	+	.	Parent=Os01t0219000-00
Chr01	irgsp1_rep	mRNA	6525486	6528178	.	+	.	ID=Os01t0219100-01;Name=Os01t0219100-01;Locus_id=Os01g0219100;Note=SFT2-like family protein.;Transcript_evidence=AK241253 (DDBJ%2C Best hit);ORF_evidence=NP_001149679.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: integral to membrane (GO:0016021);InterPro=Vesicle transport protein%2C Got1/SFT2-like (IPR007305),Vesicle transport protein%2C SFT2-like (IPR011691);NIAS_FLcDNA=J065130F20;TENOR=Os01t0219100-01;KEGG=Os01t0219100-01
Chr01	irgsp1_rep	five_prime_UTR	6525486	6525531	.	+	.	Parent=Os01t0219100-01
Chr01	irgsp1_rep	CDS	6525532	6525648	.	+	0	Parent=Os01t0219100-01
Chr01	irgsp1_rep	CDS	6525748	6525801	.	+	0	Parent=Os01t0219100-01
Chr01	irgsp1_rep	CDS	6526528	6526601	.	+	0	Parent=Os01t0219100-01
Chr01	irgsp1_rep	CDS	6526795	6526912	.	+	1	Parent=Os01t0219100-01
Chr01	irgsp1_rep	CDS	6527008	6527066	.	+	0	Parent=Os01t0219100-01
Chr01	irgsp1_rep	CDS	6527936	6528014	.	+	1	Parent=Os01t0219100-01
Chr01	irgsp1_rep	three_prime_UTR	6528015	6528178	.	+	.	Parent=Os01t0219100-01
Chr01	irgsp1_rep	mRNA	6528797	6531845	.	+	.	ID=Os01t0219200-01;Name=Os01t0219200-01;Locus_id=Os01g0219200;RAP-DB Gene Symbol Synonym(s)=ZYGO1;RAP-DB Gene Name Synonym(s)=ZYGOTENE1;CGSNL Gene Symbol=ZYGO1;CGSNL Gene Name=ZYGOTENE 1;Oryzabase Gene Symbol Synonym(s)=Os_F0777%2C OsZYGO1;Oryzabase Gene Name Synonym(s)=ZYGOTENE1;Note=F-box protein%2C Mediation of bouquet formation%2C Promotion of homolog pairing%2C synapsis%2C and crossover formation in meiosis;Transcript_evidence=AK108579;ORF_evidence=Q0JPJ6;GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box-like domain superfamily (IPR036047);NIAS_FLcDNA=002-145-H02;Manual Curation=November 13%2C 2017;Literature_PMID=28939596;Oryzabase=17468;Expression=AK108579;TENOR=Os01t0219200-01;KEGG=Os01t0219200-01
Chr01	irgsp1_rep	five_prime_UTR	6528797	6528817	.	+	.	Parent=Os01t0219200-01
Chr01	irgsp1_rep	CDS	6528818	6529218	.	+	0	Parent=Os01t0219200-01
Chr01	irgsp1_rep	CDS	6530280	6530500	.	+	1	Parent=Os01t0219200-01
Chr01	irgsp1_rep	CDS	6530588	6530632	.	+	2	Parent=Os01t0219200-01
Chr01	irgsp1_rep	CDS	6530722	6530889	.	+	2	Parent=Os01t0219200-01
Chr01	irgsp1_rep	CDS	6531004	6531051	.	+	2	Parent=Os01t0219200-01
Chr01	irgsp1_rep	CDS	6531142	6531312	.	+	2	Parent=Os01t0219200-01
Chr01	irgsp1_rep	CDS	6531435	6531548	.	+	2	Parent=Os01t0219200-01
Chr01	irgsp1_rep	CDS	6531638	6531723	.	+	2	Parent=Os01t0219200-01
Chr01	irgsp1_rep	three_prime_UTR	6531724	6531845	.	+	.	Parent=Os01t0219200-01
Chr01	irgsp1_rep	mRNA	6534612	6535829	.	+	.	ID=Os01t0219300-01;Name=Os01t0219300-01;Locus_id=Os01g0219300;Note=Conserved hypothetical protein.;Transcript_evidence=AK073193 (DDBJ%2C Best hit);ORF_evidence=Q5NAU0 (UniProt);NIAS_FLcDNA=J033023K13;Expression=AK073193;TENOR=Os01t0219300-01;KEGG=Os01t0219300-01
Chr01	irgsp1_rep	five_prime_UTR	6534612	6534783	.	+	.	Parent=Os01t0219300-01
Chr01	irgsp1_rep	CDS	6534784	6535356	.	+	0	Parent=Os01t0219300-01
Chr01	irgsp1_rep	three_prime_UTR	6535357	6535829	.	+	.	Parent=Os01t0219300-01
Chr01	irgsp1_rep	mRNA	6541008	6543076	.	+	.	ID=Os01t0219500-01;Name=Os01t0219500-01;Locus_id=Os01g0219500;Oryzabase Gene Symbol Synonym(s)=OsLTP1.1%2C T42%2C OsLtp1.1%2C LTP1.1;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein 1.1%2C lipid transfer protein 1.1%2C type 1 non-specific lipid transfer protein 1;Note=Plant lipid transfer protein/Par allergen family protein.;Transcript_evidence=AK109524 (DDBJ%2C Best hit),AK106863 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: lipid transport (GO:0006869),Molecular Function: lipid binding (GO:0008289);InterPro=Plant lipid transfer protein/Par allergen (IPR000528),Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=002-115-F10,002-118-C09;Oryzabase=13510;TENOR=Os01t0219500-01
Chr01	irgsp1_rep	five_prime_UTR	6541008	6541035	.	+	.	Parent=Os01t0219500-01
Chr01	irgsp1_rep	CDS	6541036	6541394	.	+	0	Parent=Os01t0219500-01
Chr01	irgsp1_rep	CDS	6541498	6541522	.	+	1	Parent=Os01t0219500-01
Chr01	irgsp1_rep	three_prime_UTR	6541523	6543076	.	+	.	Parent=Os01t0219500-01
Chr01	irgsp1_rep	mRNA	6541971	6544461	.	-	.	ID=Os01t0219600-00;Name=Os01t0219600-00;Locus_id=Os01g0219600;CGSNL Gene Symbol=GH9C2;CGSNL Gene Name=GLYCOSIDE HYDROLASE 9C2;Oryzabase Gene Symbol Synonym(s)=OsGH9C2;Oryzabase Gene Name Synonym(s)=glycoside hydrolase OsGH9C2%2C glycoside hydrolase 9C2;Note=Similar to Endo-beta-1%2C4-glucanase precursor (EC 3.2.1.4).;Transcript_evidence=Q5NAT8 (UniProt);ORF_evidence=Q5NAT8 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Cellular Component: extracellular region (GO:0005576),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Glycoside hydrolase%2C family 9 (IPR001701),Six-hairpin glycosidase-like (IPR008928),Six-hairpin glycosidase (IPR012341),Glycoside hydrolase%2C family 9%2C active site (IPR018221),Carbohydrate binding domain CBM49 (IPR019028);Oryzabase=11720;TENOR=Os01t0219600-00
Chr01	irgsp1_rep	CDS	6544216	6544461	.	-	0	Parent=Os01t0219600-00
Chr01	irgsp1_rep	CDS	6543886	6544098	.	-	0	Parent=Os01t0219600-00
Chr01	irgsp1_rep	CDS	6543536	6543736	.	-	0	Parent=Os01t0219600-00
Chr01	irgsp1_rep	CDS	6543330	6543419	.	-	0	Parent=Os01t0219600-00
Chr01	irgsp1_rep	CDS	6543076	6543240	.	-	0	Parent=Os01t0219600-00
Chr01	irgsp1_rep	CDS	6541971	6542978	.	-	0	Parent=Os01t0219600-00
Chr01	irgsp1_rep	mRNA	6564697	6568140	.	-	.	ID=Os01t0220100-01;Name=Os01t0220100-01;Locus_id=Os01g0220100;CGSNL Gene Symbol=CEL9A;CGSNL Gene Name=CELLULASE 9A;Oryzabase Gene Symbol Synonym(s)=OsCel9A%2C OsGH9C3%2C GH9C3%2C OsGLU5%2C Cel9A;Oryzabase Gene Name Synonym(s)=glycoside hydrolase OsGH9C3%2C glycoside hydrolase 9C3%2C endoglucanase 5;Note=Similar to Cellulase.;Transcript_evidence=AK103304 (DDBJ%2C Best hit);ORF_evidence=Q5NAT0 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Cellular Component: extracellular region (GO:0005576),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Glycoside hydrolase%2C family 9 (IPR001701),Six-hairpin glycosidase-like (IPR008928),Six-hairpin glycosidase (IPR012341),Glycoside hydrolase%2C family 9%2C active site (IPR018221),Carbohydrate binding domain CBM49 (IPR019028);NIAS_FLcDNA=J033125D14;Oryzabase=7276;Expression=AK103304;TENOR=Os01t0220100-01;KEGG=Os01t0220100-01
Chr01	irgsp1_rep	five_prime_UTR	6568078	6568140	.	-	.	Parent=Os01t0220100-01
Chr01	irgsp1_rep	CDS	6567835	6568077	.	-	0	Parent=Os01t0220100-01
Chr01	irgsp1_rep	CDS	6567525	6567737	.	-	0	Parent=Os01t0220100-01
Chr01	irgsp1_rep	CDS	6566982	6567182	.	-	0	Parent=Os01t0220100-01
Chr01	irgsp1_rep	CDS	6566789	6566878	.	-	0	Parent=Os01t0220100-01
Chr01	irgsp1_rep	CDS	6566530	6566694	.	-	0	Parent=Os01t0220100-01
Chr01	irgsp1_rep	CDS	6565793	6566450	.	-	0	Parent=Os01t0220100-01
Chr01	irgsp1_rep	CDS	6565654	6565686	.	-	2	Parent=Os01t0220100-01
Chr01	irgsp1_rep	CDS	6565029	6565348	.	-	2	Parent=Os01t0220100-01
Chr01	irgsp1_rep	three_prime_UTR	6564697	6565028	.	-	.	Parent=Os01t0220100-01
Chr01	irgsp1_rep	mRNA	6565814	6568033	.	+	.	ID=Os01t0220150-00;Name=Os01t0220150-00;Locus_id=Os01g0220150;Note=Hypothetical protein.;Transcript_evidence=tplb0042g22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0220150-00
Chr01	irgsp1_rep	five_prime_UTR	6565814	6565835	.	+	.	Parent=Os01t0220150-00
Chr01	irgsp1_rep	CDS	6565836	6566453	.	+	0	Parent=Os01t0220150-00
Chr01	irgsp1_rep	CDS	6566533	6566541	.	+	0	Parent=Os01t0220150-00
Chr01	irgsp1_rep	three_prime_UTR	6566542	6566684	.	+	.	Parent=Os01t0220150-00
Chr01	irgsp1_rep	three_prime_UTR	6566783	6566896	.	+	.	Parent=Os01t0220150-00
Chr01	irgsp1_rep	three_prime_UTR	6567000	6567161	.	+	.	Parent=Os01t0220150-00
Chr01	irgsp1_rep	three_prime_UTR	6567503	6567710	.	+	.	Parent=Os01t0220150-00
Chr01	irgsp1_rep	three_prime_UTR	6567811	6568033	.	+	.	Parent=Os01t0220150-00
Chr01	irgsp1_rep	mRNA	6575127	6577148	.	-	.	ID=Os01t0220200-01;Name=Os01t0220200-01;Locus_id=Os01g0220200;Note=Similar to Uncharacterized plant-specific domain TIGR01589 family protein.;Transcript_evidence=AK243513 (DDBJ%2C Best hit);ORF_evidence=Q60CZ4 (UniProt);InterPro=Conserved hypothetical protein CHP01589%2C plant (IPR006476);NIAS_FLcDNA=J100075D14;TENOR=Os01t0220200-01;KEGG=Os01t0220200-01
Chr01	irgsp1_rep	five_prime_UTR	6576875	6577148	.	-	.	Parent=Os01t0220200-01
Chr01	irgsp1_rep	five_prime_UTR	6576232	6576262	.	-	.	Parent=Os01t0220200-01
Chr01	irgsp1_rep	CDS	6576202	6576231	.	-	0	Parent=Os01t0220200-01
Chr01	irgsp1_rep	CDS	6575537	6575701	.	-	0	Parent=Os01t0220200-01
Chr01	irgsp1_rep	CDS	6575256	6575426	.	-	0	Parent=Os01t0220200-01
Chr01	irgsp1_rep	three_prime_UTR	6575127	6575255	.	-	.	Parent=Os01t0220200-01
Chr01	irgsp1_rep	mRNA	6583687	6587107	.	+	.	ID=Os01t0220300-01;Name=Os01t0220300-01;Locus_id=Os01g0220300;Oryzabase Gene Symbol Synonym(s)=RPS6%2C OsRPS6;Oryzabase Gene Name Synonym(s)=ribosomal protein S6%2C ribosomal protein small subunit 6;Note=Translation elongation  factor EF1B/ribosomal protein S6 domain containing protein.;Transcript_evidence=AK105167 (DDBJ%2C Best hit);ORF_evidence=NP_566618.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735),Molecular Function: rRNA binding (GO:0019843);InterPro=Ribosomal protein S6 (IPR000529),Translation elongation factor EF1B/ribosomal protein S6 (IPR014717);NIAS_FLcDNA=001-104-E12;Oryzabase=22170;Expression=AK105167;TENOR=Os01t0220300-01;KEGG=Os01t0220300-01
Chr01	irgsp1_rep	five_prime_UTR	6583687	6583821	.	+	.	Parent=Os01t0220300-01
Chr01	irgsp1_rep	CDS	6583822	6584004	.	+	0	Parent=Os01t0220300-01
Chr01	irgsp1_rep	CDS	6586632	6586889	.	+	0	Parent=Os01t0220300-01
Chr01	irgsp1_rep	three_prime_UTR	6586890	6587107	.	+	.	Parent=Os01t0220300-01
Chr01	irgsp1_rep	mRNA	6587146	6587940	.	-	.	ID=Os01t0220400-01;Name=Os01t0220400-01;Locus_id=Os01g0220400;Note=Hypothetical protein.;Transcript_evidence=AK105221 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-110-E09;Expression=AK105221;TENOR=Os01t0220400-01;KEGG=Os01t0220400-01
Chr01	irgsp1_rep	CDS	6587816	6587940	.	-	0	Parent=Os01t0220400-01
Chr01	irgsp1_rep	CDS	6587345	6587507	.	-	1	Parent=Os01t0220400-01
Chr01	irgsp1_rep	three_prime_UTR	6587146	6587344	.	-	.	Parent=Os01t0220400-01
Chr01	irgsp1_rep	mRNA	6590983	6592142	.	-	.	ID=Os01t0220500-00;Name=Os01t0220500-00;Locus_id=Os01g0220500;Note=Similar to predicted protein.;Transcript_evidence=DQ245013 (DDBJ);ORF_evidence=NP_001042427.1 (RefSeq);TENOR=Os01t0220500-00;KEGG=Os01t0220500-00
Chr01	irgsp1_rep	five_prime_UTR	6591983	6592142	.	-	.	Parent=Os01t0220500-00
Chr01	irgsp1_rep	CDS	6591902	6591982	.	-	0	Parent=Os01t0220500-00
Chr01	irgsp1_rep	CDS	6591588	6591735	.	-	0	Parent=Os01t0220500-00
Chr01	irgsp1_rep	CDS	6591331	6591440	.	-	2	Parent=Os01t0220500-00
Chr01	irgsp1_rep	three_prime_UTR	6590983	6591330	.	-	.	Parent=Os01t0220500-00
Chr01	irgsp1_rep	mRNA	6612386	6613717	.	-	.	ID=Os01t0220700-00;Name=Os01t0220700-00;Locus_id=Os01g0220700;CGSNL Gene Symbol=SWEET3B;CGSNL Gene Name=SWEET3B;Oryzabase Gene Symbol Synonym(s)=OsSWEET3b%2C SWEET3b;Note=Similar to predicted protein.;Transcript_evidence=AK252948 (DDBJ);ORF_evidence=Q5NAZ9 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=RAG1-activating protein-1-related (IPR004316);Oryzabase=20891;TENOR=Os01t0220700-00;KEGG=Os01t0220700-00
Chr01	irgsp1_rep	CDS	6613432	6613717	.	-	0	Parent=Os01t0220700-00
Chr01	irgsp1_rep	CDS	6613233	6613339	.	-	2	Parent=Os01t0220700-00
Chr01	irgsp1_rep	three_prime_UTR	6613181	6613232	.	-	.	Parent=Os01t0220700-00
Chr01	irgsp1_rep	three_prime_UTR	6612655	6612774	.	-	.	Parent=Os01t0220700-00
Chr01	irgsp1_rep	three_prime_UTR	6612386	6612554	.	-	.	Parent=Os01t0220700-00
Chr01	irgsp1_rep	mRNA	6617011	6618001	.	+	.	ID=Os01t0220801-00;Name=Os01t0220801-00;Locus_id=Os01g0220801;Note=Hypothetical protein.;Transcript_evidence=EU967040 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0220801-00
Chr01	irgsp1_rep	five_prime_UTR	6617011	6617143	.	+	.	Parent=Os01t0220801-00
Chr01	irgsp1_rep	five_prime_UTR	6617588	6617706	.	+	.	Parent=Os01t0220801-00
Chr01	irgsp1_rep	CDS	6617707	6618001	.	+	0	Parent=Os01t0220801-00
Chr01	irgsp1_rep	mRNA	6617173	6621786	.	-	.	ID=Os01t0220900-01;Name=Os01t0220900-01;Locus_id=Os01g0220900;Note=Hypothetical conserved gene.;Transcript_evidence=AK289050 (DDBJ%2C Best hit);ORF_evidence=Q5NAZ8 (UniProt);NIAS_FLcDNA=J090092O13;TENOR=Os01t0220900-01;KEGG=Os01t0220900-01
Chr01	irgsp1_rep	five_prime_UTR	6618824	6621786	.	-	.	Parent=Os01t0220900-01
Chr01	irgsp1_rep	CDS	6618368	6618823	.	-	0	Parent=Os01t0220900-01
Chr01	irgsp1_rep	three_prime_UTR	6617173	6618367	.	-	.	Parent=Os01t0220900-01
Chr01	irgsp1_rep	mRNA	6625041	6625522	.	+	.	ID=Os01t0221000-00;Name=Os01t0221000-00;Locus_id=Os01g0221000;Note=Hypothetical protein.;Transcript_evidence=EU946797 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0221000-00
Chr01	irgsp1_rep	CDS	6625041	6625522	.	+	0	Parent=Os01t0221000-00
Chr01	irgsp1_rep	mRNA	6626040	6630462	.	-	.	ID=Os01t0221100-01;Name=Os01t0221100-01;Locus_id=Os01g0221100;RAP-DB Gene Symbol Synonym(s)=OsGH3-3%2C OsGH3.3%2C OsJAR2;RAP-DB Gene Name Synonym(s)=jasmonyl-L-isoleucine synthase 2;CGSNL Gene Symbol=JAR2;CGSNL Gene Name=JASMONYL-L-ISOLEUCINE SYNTHASE 2;Oryzabase Gene Symbol Synonym(s)=OsJAR2%2C OsGH3.3%2C GH3.3%2C OsGH3-3%2C JAR2/GH3-3%2C GH3-3%2C OsGH3.3/OsJAR2;Oryzabase Gene Name Synonym(s)=jasmonyl-L-isoleucine synthase 2%2C JASMONATE RESISTANT 2%2C GRETCHEN HAGEN 3.3;Note=Jasmonyl-L-isoleucine synthase%2C Wound response%2C Jasmonic acid signalling;Transcript_evidence=AK072125;ORF_evidence=Q5NAZ7;InterPro=GH3 family (IPR004993);NIAS_FLcDNA=J013124I10;Manual Curation=February 5%2C 2019;Literature_PMID=21619871,15856348;Oryzabase=9297;Expression=AK072125;TENOR=Os01t0221100-01;KEGG=Os01t0221100-01
Chr01	irgsp1_rep	five_prime_UTR	6630362	6630462	.	-	.	Parent=Os01t0221100-01
Chr01	irgsp1_rep	five_prime_UTR	6629902	6629923	.	-	.	Parent=Os01t0221100-01
Chr01	irgsp1_rep	CDS	6629588	6629901	.	-	0	Parent=Os01t0221100-01
Chr01	irgsp1_rep	CDS	6629390	6629491	.	-	1	Parent=Os01t0221100-01
Chr01	irgsp1_rep	CDS	6628201	6629173	.	-	1	Parent=Os01t0221100-01
Chr01	irgsp1_rep	three_prime_UTR	6626040	6628200	.	-	.	Parent=Os01t0221100-01
Chr01	irgsp1_rep	mRNA	6627308	6630462	.	-	.	ID=Os01t0221100-02;Name=Os01t0221100-02;Locus_id=Os01g0221100;CGSNL Gene Symbol=JAR2;CGSNL Gene Name=JASMONYL-L-ISOLEUCINE SYNTHASE 2;Oryzabase Gene Symbol Synonym(s)=OsJAR2%2C OsGH3.3%2C GH3.3%2C OsGH3-3%2C JAR2/GH3-3%2C GH3-3%2C OsGH3.3/OsJAR2;Oryzabase Gene Name Synonym(s)=jasmonyl-L-isoleucine synthase 2%2C JASMONATE RESISTANT 2%2C GRETCHEN HAGEN 3.3;Note=GH3 auxin-responsive promoter family protein.;Transcript_evidence=AK120515 (DDBJ%2C Best hit);ORF_evidence=XP_002301399.1 (RefSeq);InterPro=GH3 auxin-responsive promoter (IPR004993);NIAS_FLcDNA=J013124A21;Oryzabase=9297;Expression=AK120515;TENOR=Os01t0221100-02;KEGG=Os01t0221100-02
Chr01	irgsp1_rep	five_prime_UTR	6629902	6630462	.	-	.	Parent=Os01t0221100-02
Chr01	irgsp1_rep	CDS	6629588	6629901	.	-	0	Parent=Os01t0221100-02
Chr01	irgsp1_rep	CDS	6629390	6629491	.	-	1	Parent=Os01t0221100-02
Chr01	irgsp1_rep	CDS	6628201	6629173	.	-	1	Parent=Os01t0221100-02
Chr01	irgsp1_rep	three_prime_UTR	6627308	6628200	.	-	.	Parent=Os01t0221100-02
Chr01	irgsp1_rep	mRNA	6642665	6645159	.	-	.	ID=Os01t0221300-01;Name=Os01t0221300-01;Locus_id=Os01g0221300;Note=Conserved hypothetical protein.;Transcript_evidence=AK073330 (DDBJ%2C Best hit);ORF_evidence=A2ZQS3 (UniProt);NIAS_FLcDNA=J033024A12;TENOR=Os01t0221300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	6645158	6645159	.	-	.	Parent=Os01t0221300-01
Chr01	irgsp1_rep	CDS	6643791	6645157	.	-	0	Parent=Os01t0221300-01
Chr01	irgsp1_rep	CDS	6642980	6643163	.	-	1	Parent=Os01t0221300-01
Chr01	irgsp1_rep	three_prime_UTR	6642665	6642979	.	-	.	Parent=Os01t0221300-01
Chr01	irgsp1_rep	mRNA	6649853	6650092	.	+	.	ID=Os01t0221400-00;Name=Os01t0221400-00;Locus_id=Os01g0221400;Note=Conserved hypothetical protein.;Transcript_evidence=EU957897 (DDBJ);ORF_evidence=NP_001172236.1 (RefSeq);TENOR=Os01t0221400-00;KEGG=Os01t0221400-00
Chr01	irgsp1_rep	CDS	6649853	6650092	.	+	0	Parent=Os01t0221400-00
Chr01	irgsp1_rep	mRNA	6653148	6655290	.	+	.	ID=Os01t0221500-01;Name=Os01t0221500-01;Locus_id=Os01g0221500;Note=Protein of unknown function DUF2358 domain containing protein.;Transcript_evidence=AK063996 (DDBJ%2C Best hit);ORF_evidence=XP_002457110.1 (RefSeq);NIAS_FLcDNA=001-124-E12;Expression=AK063996;TENOR=Os01t0221500-01;KEGG=Os01t0221500-01
Chr01	irgsp1_rep	five_prime_UTR	6653148	6653208	.	+	.	Parent=Os01t0221500-01
Chr01	irgsp1_rep	CDS	6653209	6653628	.	+	0	Parent=Os01t0221500-01
Chr01	irgsp1_rep	three_prime_UTR	6653629	6655290	.	+	.	Parent=Os01t0221500-01
Chr01	irgsp1_rep	mRNA	6659237	6662320	.	+	.	ID=Os01t0221600-01;Name=Os01t0221600-01;Locus_id=Os01g0221600;RAP-DB Gene Symbol Synonym(s)=OsALMT4;RAP-DB Gene Name Synonym(s)=Aluminum-activated malate transporter 4;CGSNL Gene Symbol=ALMT4;CGSNL Gene Name=ALUMINUM-ACTIVATED MALATE TRANSPORTER 4;Oryzabase Gene Symbol Synonym(s)=OsALMT4;Oryzabase Gene Name Synonym(s)=Aluminum-activated malate transporter 4;Note=Aluminum-activated malate transporter%2C Malate-permeable anion channel%2C Facilitation of malate efflux from cells;Transcript_evidence=Inferred from literature;ORF_evidence=Q9LDE9;GO=Biological Process: malate transport (GO:0015743);InterPro=Aluminum-activated malate transporter (IPR020966);Manual Curation=December 6%2C 2017;Literature_PMID=29101278;Oryzabase=22153;TENOR=Os01t0221600-00;Subcellular location=plasma membrane (GO:0005886)
Chr01	irgsp1_rep	CDS	6659237	6659531	.	+	0	Parent=Os01t0221600-01
Chr01	irgsp1_rep	CDS	6659683	6659823	.	+	2	Parent=Os01t0221600-01
Chr01	irgsp1_rep	CDS	6659969	6660238	.	+	2	Parent=Os01t0221600-01
Chr01	irgsp1_rep	CDS	6660324	6660463	.	+	2	Parent=Os01t0221600-01
Chr01	irgsp1_rep	CDS	6660563	6660709	.	+	0	Parent=Os01t0221600-01
Chr01	irgsp1_rep	CDS	6661739	6662320	.	+	0	Parent=Os01t0221600-01
Chr01	irgsp1_rep	mRNA	6663533	6666725	.	+	.	ID=Os01t0221700-00;Name=Os01t0221700-00;Locus_id=Os01g0221700;Note=Similar to GDT1-like protein 1%2C chloroplastic.;Transcript_evidence=B8AAM2 (UniProt);ORF_evidence=B8AAM2 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Uncharacterised protein family UPF0016 (IPR001727);TENOR=Os01t0221700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	6663533	6663652	.	+	0	Parent=Os01t0221700-00
Chr01	irgsp1_rep	CDS	6663727	6663996	.	+	0	Parent=Os01t0221700-00
Chr01	irgsp1_rep	CDS	6664118	6664171	.	+	0	Parent=Os01t0221700-00
Chr01	irgsp1_rep	CDS	6664723	6664784	.	+	0	Parent=Os01t0221700-00
Chr01	irgsp1_rep	CDS	6664940	6665008	.	+	1	Parent=Os01t0221700-00
Chr01	irgsp1_rep	CDS	6665082	6665133	.	+	1	Parent=Os01t0221700-00
Chr01	irgsp1_rep	CDS	6665287	6665361	.	+	0	Parent=Os01t0221700-00
Chr01	irgsp1_rep	CDS	6665942	6666071	.	+	0	Parent=Os01t0221700-00
Chr01	irgsp1_rep	CDS	6666154	6666224	.	+	2	Parent=Os01t0221700-00
Chr01	irgsp1_rep	CDS	6666621	6666725	.	+	0	Parent=Os01t0221700-00
Chr01	irgsp1_rep	mRNA	6667187	6667623	.	+	.	ID=Os01t0221800-01;Name=Os01t0221800-01;Locus_id=Os01g0221800;Note=Non-protein coding transcript.;Transcript_evidence=AK058478 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-016-C07;TENOR=Os01t0221800-01
Chr01	irgsp1_rep	exon	6667187	6667238	.	+	.	Parent=Os01t0221800-01
Chr01	irgsp1_rep	exon	6667326	6667623	.	+	.	Parent=Os01t0221800-01
Chr01	irgsp1_rep	mRNA	6667724	6670479	.	-	.	ID=Os01t0221900-01;Name=Os01t0221900-01;Locus_id=Os01g0221900;Note=Similar to peptidase C45%2C acyl-coenzyme A/6-aminopenicillanic acid acyl-transferase.;Transcript_evidence=AK241097 (DDBJ%2C Best hit);ORF_evidence=NP_001149746.1 (RefSeq);NIAS_FLcDNA=J065077D23;TENOR=Os01t0221900-01;KEGG=Os01t0221900-01
Chr01	irgsp1_rep	five_prime_UTR	6670443	6670479	.	-	.	Parent=Os01t0221900-01
Chr01	irgsp1_rep	CDS	6670110	6670442	.	-	0	Parent=Os01t0221900-01
Chr01	irgsp1_rep	three_prime_UTR	6669356	6670109	.	-	.	Parent=Os01t0221900-01
Chr01	irgsp1_rep	three_prime_UTR	6669171	6669276	.	-	.	Parent=Os01t0221900-01
Chr01	irgsp1_rep	three_prime_UTR	6668963	6669079	.	-	.	Parent=Os01t0221900-01
Chr01	irgsp1_rep	three_prime_UTR	6668679	6668849	.	-	.	Parent=Os01t0221900-01
Chr01	irgsp1_rep	three_prime_UTR	6668107	6668230	.	-	.	Parent=Os01t0221900-01
Chr01	irgsp1_rep	three_prime_UTR	6667724	6667969	.	-	.	Parent=Os01t0221900-01
Chr01	irgsp1_rep	mRNA	6676522	6678026	.	-	.	ID=Os01t0222001-01;Name=Os01t0222001-01;Locus_id=Os01g0222001;Note=Hypothetical conserved gene.;Transcript_evidence=AK241923 (DDBJ%2C Best hit);ORF_evidence=NP_001146456.1 (RefSeq);NIAS_FLcDNA=J075075D17;TENOR=Os01t0222001-01;KEGG=Os01t0222001-01
Chr01	irgsp1_rep	five_prime_UTR	6677809	6678026	.	-	.	Parent=Os01t0222001-01
Chr01	irgsp1_rep	CDS	6677662	6677808	.	-	0	Parent=Os01t0222001-01
Chr01	irgsp1_rep	three_prime_UTR	6676522	6677661	.	-	.	Parent=Os01t0222001-01
Chr01	irgsp1_rep	mRNA	6694030	6696795	.	-	.	ID=Os01t0222300-01;Name=Os01t0222300-01;Locus_id=Os01g0222300;Note=Conserved hypothetical protein.;Transcript_evidence=AK064262 (DDBJ%2C Best hit);ORF_evidence=B9EU53 (UniProt);NIAS_FLcDNA=002-105-D07;Expression=AK064262;TENOR=Os01t0222300-01;KEGG=Os01t0222300-01
Chr01	irgsp1_rep	five_prime_UTR	6696733	6696795	.	-	.	Parent=Os01t0222300-01
Chr01	irgsp1_rep	CDS	6696407	6696732	.	-	0	Parent=Os01t0222300-01
Chr01	irgsp1_rep	CDS	6696086	6696277	.	-	1	Parent=Os01t0222300-01
Chr01	irgsp1_rep	CDS	6694460	6694991	.	-	1	Parent=Os01t0222300-01
Chr01	irgsp1_rep	three_prime_UTR	6694384	6694459	.	-	.	Parent=Os01t0222300-01
Chr01	irgsp1_rep	three_prime_UTR	6694030	6694293	.	-	.	Parent=Os01t0222300-01
Chr01	irgsp1_rep	mRNA	6699636	6703371	.	-	.	ID=Os01t0222500-01;Name=Os01t0222500-01;Locus_id=Os01g0222500;Note=Similar to Vacuolar ATP synthase subunit E (EC 3.6.3.14) (V-ATPase E subunit) (Vacuolar proton pump E subunit).;Transcript_evidence=AK072778 (DDBJ%2C Best hit);ORF_evidence=Q9SWE7 (UniProt);GO=Biological Process: ATP hydrolysis coupled proton transport (GO:0015991),Cellular Component: proton-transporting two-sector ATPase complex%2C catalytic domain (GO:0033178),Molecular Function: proton-transporting ATPase activity%2C rotational mechanism (GO:0046961);InterPro=ATPase%2C V1/A1 complex%2C subunit E (IPR002842);NIAS_FLcDNA=J023139P14;Expression=AK072778;TENOR=Os01t0222500-01;KEGG=Os01t0222500-01 (EC:3.6.3.14)
Chr01	irgsp1_rep	five_prime_UTR	6703252	6703371	.	-	.	Parent=Os01t0222500-01
Chr01	irgsp1_rep	CDS	6703147	6703251	.	-	0	Parent=Os01t0222500-01
Chr01	irgsp1_rep	CDS	6702422	6702522	.	-	0	Parent=Os01t0222500-01
Chr01	irgsp1_rep	CDS	6702032	6702188	.	-	1	Parent=Os01t0222500-01
Chr01	irgsp1_rep	CDS	6701052	6701248	.	-	0	Parent=Os01t0222500-01
Chr01	irgsp1_rep	CDS	6700219	6700318	.	-	1	Parent=Os01t0222500-01
Chr01	irgsp1_rep	CDS	6699981	6700016	.	-	0	Parent=Os01t0222500-01
Chr01	irgsp1_rep	three_prime_UTR	6699636	6699980	.	-	.	Parent=Os01t0222500-01
Chr01	irgsp1_rep	mRNA	6704187	6704746	.	-	.	ID=Os01t0222600-01;Name=Os01t0222600-01;Locus_id=Os01g0222600;Note=Conserved hypothetical protein.;Transcript_evidence=AK121276 (DDBJ%2C Best hit);ORF_evidence=NP_001042438.1 (RefSeq);NIAS_FLcDNA=J023107H23;TENOR=Os01t0222600-01;KEGG=Os01t0222600-01
Chr01	irgsp1_rep	five_prime_UTR	6704667	6704746	.	-	.	Parent=Os01t0222600-01
Chr01	irgsp1_rep	CDS	6704403	6704666	.	-	0	Parent=Os01t0222600-01
Chr01	irgsp1_rep	three_prime_UTR	6704187	6704402	.	-	.	Parent=Os01t0222600-01
Chr01	irgsp1_rep	mRNA	6705859	6710552	.	-	.	ID=Os01t0222700-01;Name=Os01t0222700-01;Locus_id=Os01g0222700;Note=Protein of unknown function DUF659 domain containing protein.;Transcript_evidence=AK101946 (DDBJ%2C Best hit);ORF_evidence=B6SVS7 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Zinc finger%2C BED-type predicted (IPR003656),Domain of unknown function DUF659 (IPR007021),HAT dimerisation (IPR008906),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J033075C16;Expression=AK101946;TENOR=Os01t0222700-01;KEGG=Os01t0222700-01
Chr01	irgsp1_rep	five_prime_UTR	6710347	6710552	.	-	.	Parent=Os01t0222700-01
Chr01	irgsp1_rep	five_prime_UTR	6709683	6709721	.	-	.	Parent=Os01t0222700-01
Chr01	irgsp1_rep	CDS	6709682	6709682	.	-	0	Parent=Os01t0222700-01
Chr01	irgsp1_rep	CDS	6707900	6709573	.	-	2	Parent=Os01t0222700-01
Chr01	irgsp1_rep	CDS	6706087	6706490	.	-	2	Parent=Os01t0222700-01
Chr01	irgsp1_rep	three_prime_UTR	6705859	6706086	.	-	.	Parent=Os01t0222700-01
Chr01	irgsp1_rep	mRNA	6705882	6710163	.	-	.	ID=Os01t0222700-02;Name=Os01t0222700-02;Locus_id=Os01g0222700;Note=Protein of unknown function DUF659 domain containing protein.;Transcript_evidence=AK068883 (DDBJ%2C Best hit);ORF_evidence=B6SVS7 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Zinc finger%2C BED-type predicted (IPR003656),Domain of unknown function DUF659 (IPR007021),HAT dimerisation (IPR008906),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J013170M12;Expression=AK068883;TENOR=Os01t0222700-02;KEGG=Os01t0222700-02
Chr01	irgsp1_rep	five_prime_UTR	6709683	6710163	.	-	.	Parent=Os01t0222700-02
Chr01	irgsp1_rep	CDS	6709682	6709682	.	-	0	Parent=Os01t0222700-02
Chr01	irgsp1_rep	CDS	6707900	6709573	.	-	2	Parent=Os01t0222700-02
Chr01	irgsp1_rep	CDS	6706087	6706490	.	-	2	Parent=Os01t0222700-02
Chr01	irgsp1_rep	three_prime_UTR	6705882	6706086	.	-	.	Parent=Os01t0222700-02
Chr01	irgsp1_rep	mRNA	6713909	6714986	.	+	.	ID=Os01t0222800-00;Name=Os01t0222800-00;Locus_id=Os01g0222800;Note=Similar to OSIGBa0145C12.7 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01J05 (UniProt);TENOR=Os01t0222800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	6713909	6714134	.	+	0	Parent=Os01t0222800-00
Chr01	irgsp1_rep	CDS	6714733	6714986	.	+	2	Parent=Os01t0222800-00
Chr01	irgsp1_rep	mRNA	6715521	6716305	.	+	.	ID=Os01t0222900-01;Name=Os01t0222900-01;Locus_id=Os01g0222900;Note=Curculin-like (mannose-binding) lectin domain containing protein.;Transcript_evidence=AK241736 (DDBJ%2C Best hit);ORF_evidence=NP_001172237.1 (RefSeq);GO=Molecular Function: sugar binding (GO:0005529);InterPro=Bulb-type lectin domain (IPR001480);NIAS_FLcDNA=J065200K10;TENOR=Os01t0222900-01;KEGG=Os01t0222900-01
Chr01	irgsp1_rep	five_prime_UTR	6715521	6715522	.	+	.	Parent=Os01t0222900-01
Chr01	irgsp1_rep	CDS	6715523	6716305	.	+	0	Parent=Os01t0222900-01
Chr01	irgsp1_rep	mRNA	6718349	6719944	.	-	.	ID=Os01t0223000-01;Name=Os01t0223000-01;Locus_id=Os01g0223000;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK071394 (DDBJ%2C Best hit);ORF_evidence=Q6H8W7 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=J023098B22;Expression=AK071394;TENOR=Os01t0223000-01;KEGG=Os01t0223000-01
Chr01	irgsp1_rep	CDS	6719698	6719944	.	-	0	Parent=Os01t0223000-01
Chr01	irgsp1_rep	CDS	6719369	6719593	.	-	2	Parent=Os01t0223000-01
Chr01	irgsp1_rep	CDS	6719141	6719286	.	-	2	Parent=Os01t0223000-01
Chr01	irgsp1_rep	CDS	6718747	6719026	.	-	0	Parent=Os01t0223000-01
Chr01	irgsp1_rep	CDS	6718387	6718643	.	-	2	Parent=Os01t0223000-01
Chr01	irgsp1_rep	three_prime_UTR	6718349	6718386	.	-	.	Parent=Os01t0223000-01
Chr01	irgsp1_rep	mRNA	6724946	6728538	.	-	.	ID=Os01t0223200-01;Name=Os01t0223200-01;Locus_id=Os01g0223200;CGSNL Gene Symbol=GELP12;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 12;Oryzabase Gene Symbol Synonym(s)=OsGELP12%2C OsGELP12a%2C OsGELP12b%2C OsGELP12c;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 12;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK067352 (DDBJ%2C Best hit);ORF_evidence=Q6H8W7 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087),Esterase%2C SGNH hydrolase-type%2C subgroup (IPR013831);NIAS_FLcDNA=J013101L22;Oryzabase=9093;Expression=AK067352;TENOR=Os01t0223200-01;KEGG=Os01t0223200-01
Chr01	irgsp1_rep	five_prime_UTR	6728527	6728538	.	-	.	Parent=Os01t0223200-01
Chr01	irgsp1_rep	CDS	6728250	6728526	.	-	0	Parent=Os01t0223200-01
Chr01	irgsp1_rep	CDS	6727921	6728145	.	-	2	Parent=Os01t0223200-01
Chr01	irgsp1_rep	CDS	6727665	6727810	.	-	2	Parent=Os01t0223200-01
Chr01	irgsp1_rep	CDS	6727300	6727576	.	-	0	Parent=Os01t0223200-01
Chr01	irgsp1_rep	CDS	6725200	6725414	.	-	2	Parent=Os01t0223200-01
Chr01	irgsp1_rep	three_prime_UTR	6724946	6725199	.	-	.	Parent=Os01t0223200-01
Chr01	irgsp1_rep	mRNA	6732152	6735482	.	+	.	ID=Os01t0223300-01;Name=Os01t0223300-01;Locus_id=Os01g0223300;Oryzabase Gene Name Synonym(s)=(Expressed protein);Note=Protein of unknown function DUF1677%2C Oryza sativa domain containing protein.;Transcript_evidence=AK107015 (DDBJ%2C Best hit);ORF_evidence=GeneMark;InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);NIAS_FLcDNA=002-120-G02;Oryzabase=18232;TENOR=Os01t0223300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	6732152	6732152	.	+	.	Parent=Os01t0223300-01
Chr01	irgsp1_rep	CDS	6732153	6732431	.	+	0	Parent=Os01t0223300-01
Chr01	irgsp1_rep	CDS	6733535	6734602	.	+	0	Parent=Os01t0223300-01
Chr01	irgsp1_rep	three_prime_UTR	6734603	6735482	.	+	.	Parent=Os01t0223300-01
Chr01	irgsp1_rep	mRNA	6765268	6765888	.	-	.	ID=Os01t0223500-00;Name=Os01t0223500-00;Locus_id=Os01g0223500;CGSNL Gene Symbol=GELP13;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 13;Oryzabase Gene Symbol Synonym(s)=OsGELP13;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 13;Note=Similar to Esterase.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6H8W7 (UniProt);Oryzabase=10963;TENOR=Os01t0223500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	6765594	6765888	.	-	0	Parent=Os01t0223500-00
Chr01	irgsp1_rep	CDS	6765268	6765497	.	-	2	Parent=Os01t0223500-00
Chr01	irgsp1_rep	mRNA	6766511	6770164	.	-	.	ID=Os01t0223600-01;Name=Os01t0223600-01;Locus_id=Os01g0223600;RAP-DB Gene Symbol Synonym(s)=OsSRLK;RAP-DB Gene Name Synonym(s)=senescence-induced receptor-like kinase;CGSNL Gene Symbol=SRLK;CGSNL Gene Name=SENESCENCE-INDUCED RECEPTOR-LIKE KINASE;Oryzabase Gene Symbol Synonym(s)=OsSRLK;Oryzabase Gene Name Synonym(s)=Senescence-Induced Receptor-Like Kinase;Note=Leucine-rich repeat (LRR)-type receptor-like kinase%2C Regulation of chlorophyll degradation and leaf senescence;Transcript_evidence=AK110821 (truncated),Inferred from literature;ORF_evidence=Q9LDG0;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=Leucine-rich repeat domain superfamily (IPR032675),Protein kinase-like domain superfamily (IPR011009),Leucine-rich repeat-containing N-terminal%2C plant-type (IPR013210),Protein kinase domain (IPR000719),Serine-threonine/tyrosine-protein kinase%2C catalytic domain (IPR001245),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat (IPR001611),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=002-171-H01 (truncated);Manual Curation=January 17%2C 2020;Literature_PMID=31905964;Oryzabase=23452;Expression=AK110821;TENOR=Os01t0223600-01;KEGG=Os01t0223600-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	6769966	6770164	.	-	.	Parent=Os01t0223600-01
Chr01	irgsp1_rep	CDS	6768693	6769965	.	-	0	Parent=Os01t0223600-01
Chr01	irgsp1_rep	CDS	6766761	6767413	.	-	2	Parent=Os01t0223600-01
Chr01	irgsp1_rep	three_prime_UTR	6766511	6766760	.	-	.	Parent=Os01t0223600-01
Chr01	irgsp1_rep	mRNA	6774202	6776856	.	-	.	ID=Os01t0223700-01;Name=Os01t0223700-01;Locus_id=Os01g0223700;Note=Bulb-type lectin domain domain containing protein.;Transcript_evidence=AK067417 (DDBJ%2C Best hit);ORF_evidence=Q9LE23 (UniProt);GO=Molecular Function: sugar binding (GO:0005529);InterPro=Bulb-type lectin domain (IPR001480);NIAS_FLcDNA=J013099D24;TENOR=Os01t0223700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	6776785	6776856	.	-	.	Parent=Os01t0223700-01
Chr01	irgsp1_rep	five_prime_UTR	6776644	6776704	.	-	.	Parent=Os01t0223700-01
Chr01	irgsp1_rep	CDS	6775813	6776643	.	-	0	Parent=Os01t0223700-01
Chr01	irgsp1_rep	three_prime_UTR	6774202	6775812	.	-	.	Parent=Os01t0223700-01
Chr01	irgsp1_rep	mRNA	6781919	6784207	.	-	.	ID=Os01t0223800-01;Name=Os01t0223800-01;Locus_id=Os01g0223800;RAP-DB Gene Symbol Synonym(s)=OsESG1;CGSNL Gene Symbol=ESG1;Oryzabase Gene Symbol Synonym(s)=OsESG1;Note=S-domain receptor-like kinase%2C Regulation of early crown root development%2C Drought resistance;Transcript_evidence=Inferred from literature;ORF_evidence=Q9LE23;GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524);InterPro=Bulb-type lectin domain superfamily (IPR036426),Protein kinase-like domain superfamily (IPR011009),S-receptor-like serine/threonine-protein kinase (IPR024171),Bulb-type lectin domain (IPR001480),S-locus glycoprotein domain (IPR000858),PAN/Apple domain (IPR003609),Protein kinase domain (IPR000719),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);Manual Curation=December 2%2C 2019;Literature_PMID=31779898;Oryzabase=23434;TENOR=Os01t0223800-00;KEGG=Os01t0223800-00
Chr01	irgsp1_rep	CDS	6781919	6784207	.	-	0	Parent=Os01t0223800-01
Chr01	irgsp1_rep	mRNA	6787094	6789730	.	+	.	ID=Os01t0223900-01;Name=Os01t0223900-01;Locus_id=Os01g0223900;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK101712 (DDBJ%2C Best hit);ORF_evidence=A2WM87 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),S-receptor-like serine/threonine-protein kinase (IPR024171);NIAS_FLcDNA=J033060M08;Expression=AK101712;TENOR=Os01t0223900-01;KEGG=Os01t0223900-01
Chr01	irgsp1_rep	five_prime_UTR	6787094	6787135	.	+	.	Parent=Os01t0223900-01
Chr01	irgsp1_rep	CDS	6787136	6789577	.	+	0	Parent=Os01t0223900-01
Chr01	irgsp1_rep	three_prime_UTR	6789578	6789730	.	+	.	Parent=Os01t0223900-01
Chr01	irgsp1_rep	mRNA	6790903	6793320	.	-	.	ID=Os01t0224000-00;Name=Os01t0224000-00;Locus_id=Os01g0224000;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001042449.2 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),S-receptor-like serine/threonine-protein kinase (IPR024171);TENOR=Os01t0224000-00;KEGG=Os01t0224000-00
Chr01	irgsp1_rep	CDS	6790903	6793320	.	-	0	Parent=Os01t0224000-00
Chr01	irgsp1_rep	mRNA	6813719	6815534	.	+	.	ID=Os01t0224100-01;Name=Os01t0224100-01;Locus_id=Os01g0224100;CGSNL Gene Symbol=ERF53;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 53;Oryzabase Gene Symbol Synonym(s)=OsERF#053%2C OsERF053%2C OsERF53%2C AP2/EREBP#134%2C AP2/EREBP134;Oryzabase Gene Name Synonym(s)=ethylene response factor 53%2C APETALA2/ethylene-responsive element binding protein 134;Note=Similar to DNA binding protein-like protein.;Transcript_evidence=AK106517 (DDBJ%2C Best hit);ORF_evidence=A2ZQU6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=002-107-B02;Oryzabase=10569;Expression=AK106517;TENOR=Os01t0224100-01;KEGG=Os01t0224100-01
Chr01	irgsp1_rep	five_prime_UTR	6813719	6814069	.	+	.	Parent=Os01t0224100-01
Chr01	irgsp1_rep	CDS	6814070	6815212	.	+	0	Parent=Os01t0224100-01
Chr01	irgsp1_rep	three_prime_UTR	6815213	6815534	.	+	.	Parent=Os01t0224100-01
Chr01	irgsp1_rep	mRNA	6813953	6815512	.	+	.	ID=Os01t0224100-02;Name=Os01t0224100-02;Locus_id=Os01g0224100;CGSNL Gene Symbol=ERF53;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 53;Oryzabase Gene Symbol Synonym(s)=OsERF#053%2C OsERF053%2C OsERF53%2C AP2/EREBP#134%2C AP2/EREBP134;Oryzabase Gene Name Synonym(s)=ethylene response factor 53%2C APETALA2/ethylene-responsive element binding protein 134;Note=Similar to DNA binding protein-like protein.;Transcript_evidence=AK101054 (DDBJ%2C Best hit);ORF_evidence=A2ZQU6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J033015K21;Oryzabase=10569;Expression=AK101054;TENOR=Os01t0224100-02;KEGG=Os01t0224100-02
Chr01	irgsp1_rep	five_prime_UTR	6813953	6814069	.	+	.	Parent=Os01t0224100-02
Chr01	irgsp1_rep	CDS	6814070	6815212	.	+	0	Parent=Os01t0224100-02
Chr01	irgsp1_rep	three_prime_UTR	6815213	6815512	.	+	.	Parent=Os01t0224100-02
Chr01	irgsp1_rep	mRNA	6828512	6829334	.	+	.	ID=Os01t0224166-00;Name=Os01t0224166-00;Locus_id=Os01g0224166;Note=Hypothetical gene.;Transcript_evidence=CT834978 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os01t0224166-00;KEGG=Os01t0224166-00
Chr01	irgsp1_rep	CDS	6828512	6828796	.	+	0	Parent=Os01t0224166-00
Chr01	irgsp1_rep	three_prime_UTR	6828797	6829334	.	+	.	Parent=Os01t0224166-00
Chr01	irgsp1_rep	mRNA	6830317	6832770	.	-	.	ID=Os01t0224200-00;Name=Os01t0224200-00;Locus_id=Os01g0224200;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5NAQ2 (UniProt);TENOR=Os01t0224200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	6832501	6832770	.	-	0	Parent=Os01t0224200-00
Chr01	irgsp1_rep	CDS	6830317	6830814	.	-	0	Parent=Os01t0224200-00
Chr01	irgsp1_rep	mRNA	6833058	6835244	.	+	.	ID=Os01t0224300-01;Name=Os01t0224300-01;Locus_id=Os01g0224300;Note=CHCH domain containing protein.;Transcript_evidence=AK241695 (DDBJ%2C Best hit);ORF_evidence=NP_001150790.1 (RefSeq);InterPro=MTCP1 (IPR009069);NIAS_FLcDNA=J065195O03;TENOR=Os01t0224300-01;KEGG=Os01t0224300-01
Chr01	irgsp1_rep	five_prime_UTR	6833058	6833278	.	+	.	Parent=Os01t0224300-01
Chr01	irgsp1_rep	CDS	6833279	6833422	.	+	0	Parent=Os01t0224300-01
Chr01	irgsp1_rep	CDS	6834918	6834986	.	+	0	Parent=Os01t0224300-01
Chr01	irgsp1_rep	three_prime_UTR	6834987	6835244	.	+	.	Parent=Os01t0224300-01
Chr01	irgsp1_rep	mRNA	6838234	6841165	.	+	.	ID=Os01t0224400-01;Name=Os01t0224400-01;Locus_id=Os01g0224400;Note=Similar to Mitochondrial carrier protein.;Transcript_evidence=AK064461 (DDBJ%2C Best hit);ORF_evidence=E5GCG5 (UniProt);InterPro=Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=002-110-G05;TENOR=Os01t0224400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	6838234	6838728	.	+	.	Parent=Os01t0224400-01
Chr01	irgsp1_rep	CDS	6838729	6838899	.	+	0	Parent=Os01t0224400-01
Chr01	irgsp1_rep	CDS	6839619	6839710	.	+	0	Parent=Os01t0224400-01
Chr01	irgsp1_rep	CDS	6839825	6839840	.	+	1	Parent=Os01t0224400-01
Chr01	irgsp1_rep	three_prime_UTR	6839841	6839972	.	+	.	Parent=Os01t0224400-01
Chr01	irgsp1_rep	three_prime_UTR	6840179	6840239	.	+	.	Parent=Os01t0224400-01
Chr01	irgsp1_rep	three_prime_UTR	6840743	6841165	.	+	.	Parent=Os01t0224400-01
Chr01	irgsp1_rep	mRNA	6841600	6843524	.	-	.	ID=Os01t0224500-01;Name=Os01t0224500-01;Locus_id=Os01g0224500;Note=Conserved hypothetical protein.;Transcript_evidence=AK109225 (DDBJ%2C Best hit);ORF_evidence=A2WM92 (UniProt);NIAS_FLcDNA=002-156-E09;Expression=AK109225;TENOR=Os01t0224500-01;KEGG=Os01t0224500-01
Chr01	irgsp1_rep	five_prime_UTR	6843485	6843524	.	-	.	Parent=Os01t0224500-01
Chr01	irgsp1_rep	five_prime_UTR	6843351	6843377	.	-	.	Parent=Os01t0224500-01
Chr01	irgsp1_rep	CDS	6843207	6843350	.	-	0	Parent=Os01t0224500-01
Chr01	irgsp1_rep	CDS	6842976	6843096	.	-	0	Parent=Os01t0224500-01
Chr01	irgsp1_rep	CDS	6842217	6842281	.	-	2	Parent=Os01t0224500-01
Chr01	irgsp1_rep	CDS	6842063	6842149	.	-	0	Parent=Os01t0224500-01
Chr01	irgsp1_rep	CDS	6841708	6841947	.	-	0	Parent=Os01t0224500-01
Chr01	irgsp1_rep	three_prime_UTR	6841600	6841707	.	-	.	Parent=Os01t0224500-01
Chr01	irgsp1_rep	mRNA	6857345	6860952	.	+	.	ID=Os01t0224700-01;Name=Os01t0224700-01;Locus_id=Os01g0224700;RAP-DB Gene Symbol Synonym(s)=YUCCA4%2C OsYUCCA4%2C OsYUC4%2C YUC4;RAP-DB Gene Name Synonym(s)=YUCCA-LIKE GENE 4%2C (YUCCA-like gene);CGSNL Gene Symbol=YUCCA4;CGSNL Gene Name=YUCCA-LIKE GENE 4;Oryzabase Gene Symbol Synonym(s)=OsYUCCA4%2C OsYUC4%2C YUC4;Oryzabase Gene Name Synonym(s)=(YUCCA-like gene);Note=Flavin monooxygenase-like enzyme%2C Auxin biosynthesis;Transcript_evidence=AK070386 (Genbank);ORF_evidence=Q9LG41 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: flavin-containing monooxygenase activity (GO:0004499),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR013027),Flavin monooxygenase-like (IPR020946);NIAS_FLcDNA=J023054L24;Manual Curation=June 29%2C 2010;Literature_PMID=17220367;Oryzabase=7441;TENOR=Os01t0224700-01;KEGG=Os01t0224700-01 (EC:1.14.13.-)
Chr01	irgsp1_rep	five_prime_UTR	6857345	6857439	.	+	.	Parent=Os01t0224700-01
Chr01	irgsp1_rep	CDS	6857440	6858195	.	+	0	Parent=Os01t0224700-01
Chr01	irgsp1_rep	CDS	6859670	6859918	.	+	0	Parent=Os01t0224700-01
Chr01	irgsp1_rep	CDS	6860025	6860147	.	+	0	Parent=Os01t0224700-01
Chr01	irgsp1_rep	CDS	6860288	6860479	.	+	0	Parent=Os01t0224700-01
Chr01	irgsp1_rep	three_prime_UTR	6860480	6860952	.	+	.	Parent=Os01t0224700-01
Chr01	irgsp1_rep	mRNA	6879860	6881980	.	-	.	ID=Os01t0225000-00;Name=Os01t0225000-00;Locus_id=Os01g0225000;Note=Mitochondrial carrier protein domain containing protein.;Transcript_evidence=BT041596 (DDBJ);ORF_evidence=NP_001042456.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial inner membrane (GO:0005743),Molecular Function: binding (GO:0005488);InterPro=Mitochondrial carrier protein (IPR002067),Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);TENOR=Os01t0225000-00;KEGG=Os01t0225000-00
Chr01	irgsp1_rep	five_prime_UTR	6881969	6881980	.	-	.	Parent=Os01t0225000-00
Chr01	irgsp1_rep	CDS	6881696	6881968	.	-	0	Parent=Os01t0225000-00
Chr01	irgsp1_rep	CDS	6879905	6880600	.	-	0	Parent=Os01t0225000-00
Chr01	irgsp1_rep	three_prime_UTR	6879860	6879904	.	-	.	Parent=Os01t0225000-00
Chr01	irgsp1_rep	mRNA	6889444	6896387	.	+	.	ID=Os01t0225100-01;Name=Os01t0225100-01;Locus_id=Os01g0225100;Note=Conserved hypothetical protein.;Transcript_evidence=AK100398 (DDBJ%2C Best hit);ORF_evidence=B9EU66 (UniProt);NIAS_FLcDNA=J023086M16;TENOR=Os01t0225100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	6889444	6889458	.	+	.	Parent=Os01t0225100-01
Chr01	irgsp1_rep	CDS	6889459	6890307	.	+	0	Parent=Os01t0225100-01
Chr01	irgsp1_rep	three_prime_UTR	6890308	6891523	.	+	.	Parent=Os01t0225100-01
Chr01	irgsp1_rep	three_prime_UTR	6892679	6892843	.	+	.	Parent=Os01t0225100-01
Chr01	irgsp1_rep	three_prime_UTR	6893415	6893494	.	+	.	Parent=Os01t0225100-01
Chr01	irgsp1_rep	three_prime_UTR	6894001	6894221	.	+	.	Parent=Os01t0225100-01
Chr01	irgsp1_rep	three_prime_UTR	6894646	6894716	.	+	.	Parent=Os01t0225100-01
Chr01	irgsp1_rep	three_prime_UTR	6894808	6894864	.	+	.	Parent=Os01t0225100-01
Chr01	irgsp1_rep	three_prime_UTR	6895103	6895170	.	+	.	Parent=Os01t0225100-01
Chr01	irgsp1_rep	three_prime_UTR	6895238	6895344	.	+	.	Parent=Os01t0225100-01
Chr01	irgsp1_rep	three_prime_UTR	6895475	6895542	.	+	.	Parent=Os01t0225100-01
Chr01	irgsp1_rep	three_prime_UTR	6895885	6896387	.	+	.	Parent=Os01t0225100-01
Chr01	irgsp1_rep	mRNA	6897571	6904232	.	+	.	ID=Os01t0225200-01;Name=Os01t0225200-01;Locus_id=Os01g0225200;Note=Similar to predicted protein.;Transcript_evidence=AK121971 (DDBJ%2C Best hit);ORF_evidence=XP_002868685.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=GTP-binding domain%2C HSR1-related (IPR002917),GTP1/OBG (IPR006073),GTP-binding%2C EngA (IPR016484);NIAS_FLcDNA=J033108H21;Expression=AK121971;TENOR=Os01t0225200-01;KEGG=Os01t0225200-01
Chr01	irgsp1_rep	five_prime_UTR	6897571	6897586	.	+	.	Parent=Os01t0225200-01
Chr01	irgsp1_rep	CDS	6897587	6897701	.	+	0	Parent=Os01t0225200-01
Chr01	irgsp1_rep	CDS	6897786	6898005	.	+	2	Parent=Os01t0225200-01
Chr01	irgsp1_rep	CDS	6898550	6898774	.	+	1	Parent=Os01t0225200-01
Chr01	irgsp1_rep	CDS	6898860	6898953	.	+	1	Parent=Os01t0225200-01
Chr01	irgsp1_rep	three_prime_UTR	6898954	6899133	.	+	.	Parent=Os01t0225200-01
Chr01	irgsp1_rep	three_prime_UTR	6899596	6899825	.	+	.	Parent=Os01t0225200-01
Chr01	irgsp1_rep	three_prime_UTR	6900122	6901374	.	+	.	Parent=Os01t0225200-01
Chr01	irgsp1_rep	three_prime_UTR	6902079	6902216	.	+	.	Parent=Os01t0225200-01
Chr01	irgsp1_rep	three_prime_UTR	6903409	6904232	.	+	.	Parent=Os01t0225200-01
Chr01	irgsp1_rep	mRNA	6906353	6909594	.	+	.	ID=Os01t0225300-01;Name=Os01t0225300-01;Locus_id=Os01g0225300;Note=Conserved hypothetical protein.;Transcript_evidence=AK242946 (DDBJ%2C Best hit);ORF_evidence=Q9AWZ9 (UniProt);NIAS_FLcDNA=J090088B08;TENOR=Os01t0225300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	6906353	6907500	.	+	.	Parent=Os01t0225300-01
Chr01	irgsp1_rep	CDS	6907501	6907710	.	+	0	Parent=Os01t0225300-01
Chr01	irgsp1_rep	CDS	6907801	6907979	.	+	0	Parent=Os01t0225300-01
Chr01	irgsp1_rep	CDS	6908469	6908717	.	+	1	Parent=Os01t0225300-01
Chr01	irgsp1_rep	CDS	6908950	6909193	.	+	1	Parent=Os01t0225300-01
Chr01	irgsp1_rep	three_prime_UTR	6909194	6909594	.	+	.	Parent=Os01t0225300-01
Chr01	irgsp1_rep	mRNA	6909800	6910700	.	-	.	ID=Os01t0225400-01;Name=Os01t0225400-01;Locus_id=Os01g0225400;Note=Pyruvate/Phosphoenolpyruvate kinase%2C catalytic core domain containing protein.;Transcript_evidence=AK242525 (DDBJ%2C Best hit);ORF_evidence=NP_001150103.1 (RefSeq);GO=Biological Process: pantothenate biosynthetic process (GO:0015940),Molecular Function: catalytic activity (GO:0003824),Molecular Function: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity (GO:0003864);InterPro=Ketopantoate hydroxymethyltransferase (IPR003700),Pyruvate/Phosphoenolpyruvate kinase (IPR015813);NIAS_FLcDNA=J080315B20;TENOR=Os01t0225400-01;KEGG=Os01t0225400-01 (EC:2.1.2.11)
Chr01	irgsp1_rep	five_prime_UTR	6910699	6910700	.	-	.	Parent=Os01t0225400-01
Chr01	irgsp1_rep	CDS	6910588	6910698	.	-	0	Parent=Os01t0225400-01
Chr01	irgsp1_rep	CDS	6910298	6910351	.	-	0	Parent=Os01t0225400-01
Chr01	irgsp1_rep	CDS	6909939	6910190	.	-	0	Parent=Os01t0225400-01
Chr01	irgsp1_rep	three_prime_UTR	6909800	6909938	.	-	.	Parent=Os01t0225400-01
Chr01	irgsp1_rep	mRNA	6912812	6915127	.	-	.	ID=Os01t0225500-00;Name=Os01t0225500-00;Locus_id=Os01g0225500;Note=Similar to 3-methyl-2-oxobutanoate hydroxymethyltransferase.;Transcript_evidence=CT835508 (DDBJ%2C Best hit);ORF_evidence=NP_001150103.1 (RefSeq);GO=Biological Process: pantothenate biosynthetic process (GO:0015940),Molecular Function: catalytic activity (GO:0003824),Molecular Function: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity (GO:0003864);InterPro=Ketopantoate hydroxymethyltransferase (IPR003700),Pyruvate/Phosphoenolpyruvate kinase (IPR015813);TENOR=Os01t0225500-00;KEGG=Os01t0225500-00 (EC:2.1.2.11)
Chr01	irgsp1_rep	five_prime_UTR	6915052	6915127	.	-	.	Parent=Os01t0225500-00
Chr01	irgsp1_rep	CDS	6914524	6915051	.	-	0	Parent=Os01t0225500-00
Chr01	irgsp1_rep	CDS	6914220	6914426	.	-	0	Parent=Os01t0225500-00
Chr01	irgsp1_rep	CDS	6913979	6914125	.	-	0	Parent=Os01t0225500-00
Chr01	irgsp1_rep	CDS	6913434	6913484	.	-	0	Parent=Os01t0225500-00
Chr01	irgsp1_rep	CDS	6913053	6913319	.	-	0	Parent=Os01t0225500-00
Chr01	irgsp1_rep	three_prime_UTR	6912812	6913052	.	-	.	Parent=Os01t0225500-00
Chr01	irgsp1_rep	mRNA	6922190	6923336	.	+	.	ID=Os01t0225550-01;Name=Os01t0225550-01;Locus_id=Os01g0225550;Note=Hypothetical gene.;Transcript_evidence=AK242089 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J075140N08;TENOR=Os01t0225550-01;KEGG=Os01t0225550-01
Chr01	irgsp1_rep	CDS	6922190	6922702	.	+	0	Parent=Os01t0225550-01
Chr01	irgsp1_rep	three_prime_UTR	6922703	6923336	.	+	.	Parent=Os01t0225550-01
Chr01	irgsp1_rep	mRNA	6922127	6922762	.	-	.	ID=Os01t0225600-01;Name=Os01t0225600-01;Locus_id=Os01g0225600;RAP-DB Gene Symbol Synonym(s)=OsLea14-A;RAP-DB Gene Name Synonym(s)=late embryogenesis abundant protein;CGSNL Gene Symbol=LEA14;CGSNL Gene Name=LATE EMBRYOGENESIS ABUNDANT PROTEIN;Oryzabase Gene Symbol Synonym(s)=Lea14A%2C OsLEA5%2C OsEnS-2;Oryzabase Gene Name Synonym(s)=late embryogenesis abundant protein 5%2C endosperm-specific gene 2;Note=Atypical 5C LEA (late embryogenesis abundant) protein%2C Multiple stress tolerance%2C Hg accumulation;Transcript_evidence=CU405989 (Oryza rufipogon);ORF_evidence=Q9AWZ5;GO=Biological Process: response to desiccation (GO:0009269);InterPro=Late embryogenesis abundant protein%2C LEA_2 subgroup (IPR004864),Water stress and hypersensitive response domain (IPR013990);Manual Curation=June 9%2C 2020;Literature_PMID=30762181;Oryzabase=9036;TENOR=Os01t0225600-00;KEGG=Os01t0225600-00
Chr01	irgsp1_rep	five_prime_UTR	6922688	6922762	.	-	.	Parent=Os01t0225600-01
Chr01	irgsp1_rep	CDS	6922232	6922687	.	-	0	Parent=Os01t0225600-01
Chr01	irgsp1_rep	three_prime_UTR	6922127	6922231	.	-	.	Parent=Os01t0225600-01
Chr01	irgsp1_rep	mRNA	6925469	6925910	.	+	.	ID=Os01t0225700-01;Name=Os01t0225700-01;Locus_id=Os01g0225700;Note=Hypothetical gene.;Transcript_evidence=AK242457 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J080097K05;TENOR=Os01t0225700-01;KEGG=Os01t0225700-01
Chr01	irgsp1_rep	five_prime_UTR	6925469	6925470	.	+	.	Parent=Os01t0225700-01
Chr01	irgsp1_rep	CDS	6925471	6925695	.	+	0	Parent=Os01t0225700-01
Chr01	irgsp1_rep	three_prime_UTR	6925696	6925910	.	+	.	Parent=Os01t0225700-01
Chr01	irgsp1_rep	mRNA	6957350	6958652	.	-	.	ID=Os01t0226200-00;Name=Os01t0226200-00;Locus_id=Os01g0226200;Note=Conserved hypothetical protein.;Transcript_evidence=EU946161 (DDBJ);ORF_evidence=NP_001042462.1 (RefSeq);TENOR=Os01t0226200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	6958652	6958652	.	-	.	Parent=Os01t0226200-00
Chr01	irgsp1_rep	CDS	6957839	6958651	.	-	0	Parent=Os01t0226200-00
Chr01	irgsp1_rep	CDS	6957350	6957781	.	-	0	Parent=Os01t0226200-00
Chr01	irgsp1_rep	mRNA	6967909	6969059	.	-	.	ID=Os01t0226250-00;Name=Os01t0226250-00;Locus_id=Os01g0226250;Note=Non-protein coding transcript.;Transcript_evidence=BT086850 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0226250-00
Chr01	irgsp1_rep	exon	6968797	6969059	.	-	.	Parent=Os01t0226250-00
Chr01	irgsp1_rep	exon	6967909	6968009	.	-	.	Parent=Os01t0226250-00
Chr01	irgsp1_rep	mRNA	6968951	6970078	.	+	.	ID=Os01t0226300-01;Name=Os01t0226300-01;Locus_id=Os01g0226300;Note=Reticulon family protein.;Transcript_evidence=AK059314 (DDBJ%2C Best hit);ORF_evidence=NP_001150474.1 (RefSeq);GO=Cellular Component: endoplasmic reticulum (GO:0005783);InterPro=Reticulon (IPR003388);NIAS_FLcDNA=001-025-G12;Expression=AK059314;TENOR=Os01t0226300-01;KEGG=Os01t0226300-01
Chr01	irgsp1_rep	five_prime_UTR	6968951	6968952	.	+	.	Parent=Os01t0226300-01
Chr01	irgsp1_rep	CDS	6968953	6969110	.	+	0	Parent=Os01t0226300-01
Chr01	irgsp1_rep	CDS	6969224	6969365	.	+	1	Parent=Os01t0226300-01
Chr01	irgsp1_rep	CDS	6969448	6969517	.	+	0	Parent=Os01t0226300-01
Chr01	irgsp1_rep	CDS	6969617	6969783	.	+	2	Parent=Os01t0226300-01
Chr01	irgsp1_rep	three_prime_UTR	6969784	6970078	.	+	.	Parent=Os01t0226300-01
Chr01	irgsp1_rep	mRNA	6970912	6976706	.	-	.	ID=Os01t0226400-01;Name=Os01t0226400-01;Locus_id=Os01g0226400;Note=ATPase%2C AAA-type%2C core domain containing protein.;Transcript_evidence=AK102301 (DDBJ%2C Best hit);ORF_evidence=NP_001117544.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);NIAS_FLcDNA=J033089N14;Expression=AK102301;TENOR=Os01t0226400-01;KEGG=Os01t0226400-01
Chr01	irgsp1_rep	five_prime_UTR	6976518	6976706	.	-	.	Parent=Os01t0226400-01
Chr01	irgsp1_rep	CDS	6976306	6976517	.	-	0	Parent=Os01t0226400-01
Chr01	irgsp1_rep	CDS	6975460	6975581	.	-	1	Parent=Os01t0226400-01
Chr01	irgsp1_rep	CDS	6975276	6975364	.	-	2	Parent=Os01t0226400-01
Chr01	irgsp1_rep	CDS	6975160	6975198	.	-	0	Parent=Os01t0226400-01
Chr01	irgsp1_rep	CDS	6974845	6974938	.	-	0	Parent=Os01t0226400-01
Chr01	irgsp1_rep	CDS	6974113	6974155	.	-	2	Parent=Os01t0226400-01
Chr01	irgsp1_rep	CDS	6973924	6974024	.	-	1	Parent=Os01t0226400-01
Chr01	irgsp1_rep	CDS	6973260	6973818	.	-	2	Parent=Os01t0226400-01
Chr01	irgsp1_rep	CDS	6973097	6973184	.	-	1	Parent=Os01t0226400-01
Chr01	irgsp1_rep	CDS	6972799	6972966	.	-	0	Parent=Os01t0226400-01
Chr01	irgsp1_rep	CDS	6971964	6972532	.	-	0	Parent=Os01t0226400-01
Chr01	irgsp1_rep	CDS	6971711	6971849	.	-	1	Parent=Os01t0226400-01
Chr01	irgsp1_rep	CDS	6971567	6971635	.	-	0	Parent=Os01t0226400-01
Chr01	irgsp1_rep	CDS	6971357	6971473	.	-	0	Parent=Os01t0226400-01
Chr01	irgsp1_rep	CDS	6971112	6971225	.	-	0	Parent=Os01t0226400-01
Chr01	irgsp1_rep	three_prime_UTR	6970912	6971111	.	-	.	Parent=Os01t0226400-01
Chr01	irgsp1_rep	mRNA	6971042	6976599	.	+	.	ID=Os01t0226450-00;Name=Os01t0226450-00;Locus_id=Os01g0226450;Note=Hypothetical protein.;Transcript_evidence=tplb0025l23 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0226450-00
Chr01	irgsp1_rep	five_prime_UTR	6971042	6971222	.	+	.	Parent=Os01t0226450-00
Chr01	irgsp1_rep	five_prime_UTR	6971354	6971457	.	+	.	Parent=Os01t0226450-00
Chr01	irgsp1_rep	five_prime_UTR	6971547	6971637	.	+	.	Parent=Os01t0226450-00
Chr01	irgsp1_rep	five_prime_UTR	6971717	6971848	.	+	.	Parent=Os01t0226450-00
Chr01	irgsp1_rep	five_prime_UTR	6971963	6972497	.	+	.	Parent=Os01t0226450-00
Chr01	irgsp1_rep	CDS	6972498	6972517	.	+	0	Parent=Os01t0226450-00
Chr01	irgsp1_rep	CDS	6972778	6972957	.	+	1	Parent=Os01t0226450-00
Chr01	irgsp1_rep	CDS	6973084	6973102	.	+	1	Parent=Os01t0226450-00
Chr01	irgsp1_rep	three_prime_UTR	6973103	6973186	.	+	.	Parent=Os01t0226450-00
Chr01	irgsp1_rep	three_prime_UTR	6973257	6973806	.	+	.	Parent=Os01t0226450-00
Chr01	irgsp1_rep	three_prime_UTR	6973911	6974009	.	+	.	Parent=Os01t0226450-00
Chr01	irgsp1_rep	three_prime_UTR	6974097	6974151	.	+	.	Parent=Os01t0226450-00
Chr01	irgsp1_rep	three_prime_UTR	6974832	6974962	.	+	.	Parent=Os01t0226450-00
Chr01	irgsp1_rep	three_prime_UTR	6975266	6975364	.	+	.	Parent=Os01t0226450-00
Chr01	irgsp1_rep	three_prime_UTR	6975460	6975593	.	+	.	Parent=Os01t0226450-00
Chr01	irgsp1_rep	three_prime_UTR	6976318	6976599	.	+	.	Parent=Os01t0226450-00
Chr01	irgsp1_rep	mRNA	6979616	6985720	.	+	.	ID=Os01t0226500-01;Name=Os01t0226500-01;Locus_id=Os01g0226500;Note=Conserved hypothetical protein.;Transcript_evidence=AK066242 (DDBJ%2C Best hit);ORF_evidence=B8AAY7 (UniProt);NIAS_FLcDNA=J013054K11;Expression=AK066242;TENOR=Os01t0226500-01;KEGG=Os01t0226500-01
Chr01	irgsp1_rep	five_prime_UTR	6979616	6979765	.	+	.	Parent=Os01t0226500-01
Chr01	irgsp1_rep	five_prime_UTR	6979855	6979868	.	+	.	Parent=Os01t0226500-01
Chr01	irgsp1_rep	CDS	6979869	6980053	.	+	0	Parent=Os01t0226500-01
Chr01	irgsp1_rep	CDS	6980183	6980558	.	+	1	Parent=Os01t0226500-01
Chr01	irgsp1_rep	CDS	6980651	6980734	.	+	0	Parent=Os01t0226500-01
Chr01	irgsp1_rep	CDS	6980838	6980903	.	+	0	Parent=Os01t0226500-01
Chr01	irgsp1_rep	CDS	6981403	6981473	.	+	0	Parent=Os01t0226500-01
Chr01	irgsp1_rep	CDS	6982331	6982718	.	+	1	Parent=Os01t0226500-01
Chr01	irgsp1_rep	CDS	6983114	6983154	.	+	0	Parent=Os01t0226500-01
Chr01	irgsp1_rep	CDS	6983661	6983757	.	+	1	Parent=Os01t0226500-01
Chr01	irgsp1_rep	three_prime_UTR	6983758	6983814	.	+	.	Parent=Os01t0226500-01
Chr01	irgsp1_rep	three_prime_UTR	6985396	6985720	.	+	.	Parent=Os01t0226500-01
Chr01	irgsp1_rep	mRNA	6980199	6985353	.	+	.	ID=Os01t0226500-02;Name=Os01t0226500-02;Locus_id=Os01g0226500;Note=Similar to predicted protein.;Transcript_evidence=AK101123 (DDBJ%2C Best hit);ORF_evidence=B8AAY7 (UniProt);NIAS_FLcDNA=J033025J12;Expression=AK101123;TENOR=Os01t0226500-02;KEGG=Os01t0226500-02
Chr01	irgsp1_rep	CDS	6980199	6980558	.	+	0	Parent=Os01t0226500-02
Chr01	irgsp1_rep	CDS	6980651	6980734	.	+	0	Parent=Os01t0226500-02
Chr01	irgsp1_rep	CDS	6980838	6980972	.	+	0	Parent=Os01t0226500-02
Chr01	irgsp1_rep	three_prime_UTR	6980973	6981473	.	+	.	Parent=Os01t0226500-02
Chr01	irgsp1_rep	three_prime_UTR	6982331	6982718	.	+	.	Parent=Os01t0226500-02
Chr01	irgsp1_rep	three_prime_UTR	6983114	6983154	.	+	.	Parent=Os01t0226500-02
Chr01	irgsp1_rep	three_prime_UTR	6983661	6985353	.	+	.	Parent=Os01t0226500-02
Chr01	irgsp1_rep	mRNA	6987901	6994006	.	+	.	ID=Os01t0226600-01;Name=Os01t0226600-01;Locus_id=Os01g0226600;Oryzabase Gene Symbol Synonym(s)=SLAC;Oryzabase Gene Name Synonym(s)=SLOW ANION CHANNEL;Note=Similar to C4-dicarboxylate transporter/malic acid transport protein.;Transcript_evidence=AK121458 (DDBJ%2C Best hit);ORF_evidence=B6SWN8 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=C4-dicarboxylate transporter/malic acid transport protein (IPR004695);NIAS_FLcDNA=J023143J08;Oryzabase=21756;TENOR=Os01t0226600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	6987901	6988028	.	+	.	Parent=Os01t0226600-01
Chr01	irgsp1_rep	five_prime_UTR	6991138	6991353	.	+	.	Parent=Os01t0226600-01
Chr01	irgsp1_rep	CDS	6991354	6991968	.	+	0	Parent=Os01t0226600-01
Chr01	irgsp1_rep	CDS	6992092	6992871	.	+	0	Parent=Os01t0226600-01
Chr01	irgsp1_rep	CDS	6992970	6993431	.	+	0	Parent=Os01t0226600-01
Chr01	irgsp1_rep	three_prime_UTR	6993432	6994006	.	+	.	Parent=Os01t0226600-01
Chr01	irgsp1_rep	mRNA	6989015	6993608	.	+	.	ID=Os01t0226600-02;Name=Os01t0226600-02;Locus_id=Os01g0226600;Oryzabase Gene Symbol Synonym(s)=SLAC;Oryzabase Gene Name Synonym(s)=SLOW ANION CHANNEL;Note=Similar to C4-dicarboxylate transporter/malic acid transport protein.;Transcript_evidence=AK069571 (DDBJ%2C Best hit);ORF_evidence=B6SWN8 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=C4-dicarboxylate transporter/malic acid transport protein (IPR004695);NIAS_FLcDNA=J023021A14;Oryzabase=21756;TENOR=Os01t0226600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	6989015	6989205	.	+	.	Parent=Os01t0226600-02
Chr01	irgsp1_rep	five_prime_UTR	6991138	6991353	.	+	.	Parent=Os01t0226600-02
Chr01	irgsp1_rep	CDS	6991354	6992862	.	+	0	Parent=Os01t0226600-02
Chr01	irgsp1_rep	CDS	6992970	6993431	.	+	0	Parent=Os01t0226600-02
Chr01	irgsp1_rep	three_prime_UTR	6993432	6993608	.	+	.	Parent=Os01t0226600-02
Chr01	irgsp1_rep	mRNA	7008989	7010250	.	-	.	ID=Os01t0226666-00;Name=Os01t0226666-00;Locus_id=Os01g0226666;Note=Hypothetical protein.;Transcript_evidence=AK376581 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0226666-00
Chr01	irgsp1_rep	five_prime_UTR	7010250	7010250	.	-	.	Parent=Os01t0226666-00
Chr01	irgsp1_rep	CDS	7009806	7010249	.	-	0	Parent=Os01t0226666-00
Chr01	irgsp1_rep	three_prime_UTR	7008989	7009805	.	-	.	Parent=Os01t0226666-00
Chr01	irgsp1_rep	mRNA	7009033	7010446	.	+	.	ID=Os01t0226700-01;Name=Os01t0226700-01;Locus_id=Os01g0226700;Oryzabase Gene Symbol Synonym(s)=OsOFP1%2C OsOFP01%2C OFP1;Oryzabase Gene Name Synonym(s)=OVATE family protein 1%2C OVATE-domain containing protein 1;Note=Protein of unknown function DUF623%2C plant domain containing protein.;Transcript_evidence=AK063653 (DDBJ%2C Best hit);ORF_evidence=NP_001152390.1 (RefSeq);InterPro=Domain of unknown function DUF623 (IPR006458);NIAS_FLcDNA=001-119-B04;Oryzabase=18297;Expression=AK063653;TENOR=Os01t0226700-01;KEGG=Os01t0226700-01
Chr01	irgsp1_rep	five_prime_UTR	7009033	7009076	.	+	.	Parent=Os01t0226700-01
Chr01	irgsp1_rep	CDS	7009077	7009482	.	+	0	Parent=Os01t0226700-01
Chr01	irgsp1_rep	CDS	7009915	7010261	.	+	2	Parent=Os01t0226700-01
Chr01	irgsp1_rep	three_prime_UTR	7010262	7010446	.	+	.	Parent=Os01t0226700-01
Chr01	irgsp1_rep	mRNA	7024297	7030591	.	+	.	ID=Os01t0227100-01;Name=Os01t0227100-01;Locus_id=Os01g0227100;RAP-DB Gene Symbol Synonym(s)=NYC1%2C nyc1%2C OsNYC1;RAP-DB Gene Name Synonym(s)=NON-YELLOW COLORING 1%2C Chlorophyl b degrading enzyme%2C Chlase%2C Non-Yellow Coloring 1%2C non-yellow coloring1%2C Probable chlorophyll(ide) b reductase NYC1%2C chloroplastic%2C Protein NON-YELLOW COLORING 1%2C short-chain dehydrogenase/reductase NYC1;CGSNL Gene Symbol=NYC1;CGSNL Gene Name=NON-YELLOW COLORING 1;Oryzabase Gene Symbol Synonym(s)=nyc1%2C OsNYC1;Oryzabase Gene Name Synonym(s)=Chlorophyl b degrading enzyme%2C Chlase%2C Non-Yellow Coloring 1%2C non-yellow coloring1%2C Probable chlorophyll(ide) b reductase NYC1%2C chloroplastic%2C Protein NON-YELLOW COLORING 1%2C short-chain dehydrogenase/reductase NYC1;Note=Chlorophyll b reductase%2C Leaf senescence;Transcript_evidence=AB255025 (Genbank),AK068523 (Genbank);ORF_evidence=Q5N800 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);Manual Curation=May 14%2C 2009;Literature_PMID=17416733,17709752;Oryzabase=7375;TENOR=Os01t0227100-01
Chr01	irgsp1_rep	five_prime_UTR	7024297	7024382	.	+	.	Parent=Os01t0227100-01
Chr01	irgsp1_rep	CDS	7024383	7024700	.	+	0	Parent=Os01t0227100-01
Chr01	irgsp1_rep	CDS	7025627	7025705	.	+	0	Parent=Os01t0227100-01
Chr01	irgsp1_rep	CDS	7025816	7025951	.	+	2	Parent=Os01t0227100-01
Chr01	irgsp1_rep	CDS	7026324	7026398	.	+	1	Parent=Os01t0227100-01
Chr01	irgsp1_rep	CDS	7026513	7026708	.	+	1	Parent=Os01t0227100-01
Chr01	irgsp1_rep	CDS	7026895	7026963	.	+	0	Parent=Os01t0227100-01
Chr01	irgsp1_rep	CDS	7027115	7027254	.	+	0	Parent=Os01t0227100-01
Chr01	irgsp1_rep	CDS	7027425	7027547	.	+	1	Parent=Os01t0227100-01
Chr01	irgsp1_rep	CDS	7028390	7028582	.	+	1	Parent=Os01t0227100-01
Chr01	irgsp1_rep	CDS	7029872	7030057	.	+	0	Parent=Os01t0227100-01
Chr01	irgsp1_rep	three_prime_UTR	7030058	7030591	.	+	.	Parent=Os01t0227100-01
Chr01	irgsp1_rep	mRNA	7026322	7030430	.	+	.	ID=Os01t0227100-02;Name=Os01t0227100-02;Locus_id=Os01g0227100;CGSNL Gene Symbol=NYC1;CGSNL Gene Name=NON-YELLOW COLORING 1;Oryzabase Gene Symbol Synonym(s)=nyc1%2C OsNYC1;Oryzabase Gene Name Synonym(s)=Chlorophyl b degrading enzyme%2C Chlase%2C Non-Yellow Coloring 1%2C non-yellow coloring1%2C Probable chlorophyll(ide) b reductase NYC1%2C chloroplastic%2C Protein NON-YELLOW COLORING 1%2C short-chain dehydrogenase/reductase NYC1;Note=Similar to oxidoreductase.;Transcript_evidence=AK061638 (DDBJ%2C Best hit);ORF_evidence=B6SSC2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-036-A12;Oryzabase=7375;Expression=AK061638;TENOR=Os01t0227100-02;KEGG=Os01t0227100-02
Chr01	irgsp1_rep	CDS	7026322	7026398	.	+	0	Parent=Os01t0227100-02
Chr01	irgsp1_rep	CDS	7026513	7026708	.	+	1	Parent=Os01t0227100-02
Chr01	irgsp1_rep	CDS	7026895	7026963	.	+	0	Parent=Os01t0227100-02
Chr01	irgsp1_rep	CDS	7027115	7027254	.	+	0	Parent=Os01t0227100-02
Chr01	irgsp1_rep	CDS	7027425	7027547	.	+	1	Parent=Os01t0227100-02
Chr01	irgsp1_rep	CDS	7028390	7028582	.	+	1	Parent=Os01t0227100-02
Chr01	irgsp1_rep	CDS	7029872	7030057	.	+	0	Parent=Os01t0227100-02
Chr01	irgsp1_rep	three_prime_UTR	7030058	7030430	.	+	.	Parent=Os01t0227100-02
Chr01	irgsp1_rep	mRNA	7038103	7042925	.	+	.	ID=Os01t0227200-01;Name=Os01t0227200-01;Locus_id=Os01g0227200;Note=Similar to Somatic embryogenesis receptor kinase-like protein.;Transcript_evidence=AK103247 (DDBJ%2C Best hit);ORF_evidence=B6SXS9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J033123K23;Expression=AK103247;TENOR=Os01t0227200-01;KEGG=Os01t0227200-01
Chr01	irgsp1_rep	five_prime_UTR	7038103	7038383	.	+	.	Parent=Os01t0227200-01
Chr01	irgsp1_rep	CDS	7038384	7038795	.	+	0	Parent=Os01t0227200-01
Chr01	irgsp1_rep	CDS	7039447	7039962	.	+	2	Parent=Os01t0227200-01
Chr01	irgsp1_rep	CDS	7040507	7040593	.	+	2	Parent=Os01t0227200-01
Chr01	irgsp1_rep	CDS	7040698	7040768	.	+	2	Parent=Os01t0227200-01
Chr01	irgsp1_rep	CDS	7041148	7041224	.	+	0	Parent=Os01t0227200-01
Chr01	irgsp1_rep	CDS	7041380	7041527	.	+	1	Parent=Os01t0227200-01
Chr01	irgsp1_rep	CDS	7041973	7042134	.	+	0	Parent=Os01t0227200-01
Chr01	irgsp1_rep	CDS	7042374	7042694	.	+	0	Parent=Os01t0227200-01
Chr01	irgsp1_rep	three_prime_UTR	7042695	7042925	.	+	.	Parent=Os01t0227200-01
Chr01	irgsp1_rep	mRNA	7039880	7042890	.	-	.	ID=Os01t0227250-00;Name=Os01t0227250-00;Locus_id=Os01g0227250;Note=Hypothetical gene.;Transcript_evidence=BT016904 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0227250-00;KEGG=Os01t0227250-00
Chr01	irgsp1_rep	five_prime_UTR	7042459	7042890	.	-	.	Parent=Os01t0227250-00
Chr01	irgsp1_rep	CDS	7042372	7042458	.	-	0	Parent=Os01t0227250-00
Chr01	irgsp1_rep	CDS	7041972	7042138	.	-	0	Parent=Os01t0227250-00
Chr01	irgsp1_rep	CDS	7041384	7041526	.	-	1	Parent=Os01t0227250-00
Chr01	irgsp1_rep	CDS	7041146	7041231	.	-	2	Parent=Os01t0227250-00
Chr01	irgsp1_rep	CDS	7040718	7040773	.	-	0	Parent=Os01t0227250-00
Chr01	irgsp1_rep	CDS	7040583	7040613	.	-	1	Parent=Os01t0227250-00
Chr01	irgsp1_rep	three_prime_UTR	7040498	7040582	.	-	.	Parent=Os01t0227250-00
Chr01	irgsp1_rep	three_prime_UTR	7039880	7039954	.	-	.	Parent=Os01t0227250-00
Chr01	irgsp1_rep	mRNA	7044012	7047544	.	+	.	ID=Os01t0227300-01;Name=Os01t0227300-01;Locus_id=Os01g0227300;Oryzabase Gene Symbol Synonym(s)=OsRab7B1%2C Rab7B1%2C OsRab7;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab7B1;Note=Similar to RAB7D.;Transcript_evidence=AK070320 (DDBJ%2C Best hit),AK059958 (DDBJ%2C Best hit);ORF_evidence=Q5MGQ9 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: intracellular protein transport (GO:0006886),Biological Process: nucleocytoplasmic transport (GO:0006913),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Cellular Component: membrane (GO:0016020),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Ran GTPase (IPR002041),Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C Ras type (IPR020849);NIAS_FLcDNA=J023052D24,006-211-E06;Oryzabase=11088;Expression=AK070320;TENOR=Os01t0227300-01;KEGG=Os01t0227300-01
Chr01	irgsp1_rep	five_prime_UTR	7044012	7044129	.	+	.	Parent=Os01t0227300-01
Chr01	irgsp1_rep	CDS	7044130	7044182	.	+	0	Parent=Os01t0227300-01
Chr01	irgsp1_rep	CDS	7044309	7044335	.	+	1	Parent=Os01t0227300-01
Chr01	irgsp1_rep	CDS	7044461	7044560	.	+	1	Parent=Os01t0227300-01
Chr01	irgsp1_rep	CDS	7046110	7046256	.	+	0	Parent=Os01t0227300-01
Chr01	irgsp1_rep	CDS	7046342	7046422	.	+	0	Parent=Os01t0227300-01
Chr01	irgsp1_rep	CDS	7046509	7046654	.	+	0	Parent=Os01t0227300-01
Chr01	irgsp1_rep	CDS	7047030	7047099	.	+	1	Parent=Os01t0227300-01
Chr01	irgsp1_rep	three_prime_UTR	7047100	7047544	.	+	.	Parent=Os01t0227300-01
Chr01	irgsp1_rep	mRNA	7048457	7050422	.	-	.	ID=Os01t0227350-00;Name=Os01t0227350-00;Locus_id=Os01g0227350;Note=Hypothetical protein.;Transcript_evidence=tplb0024g24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0227350-00
Chr01	irgsp1_rep	five_prime_UTR	7049961	7050422	.	-	.	Parent=Os01t0227350-00
Chr01	irgsp1_rep	CDS	7049898	7049960	.	-	0	Parent=Os01t0227350-00
Chr01	irgsp1_rep	CDS	7048457	7049193	.	-	0	Parent=Os01t0227350-00
Chr01	irgsp1_rep	mRNA	7049941	7050874	.	+	.	ID=Os01t0227400-01;Name=Os01t0227400-01;Locus_id=Os01g0227400;Note=Similar to CytoChrome P450 71A1 (EC 1.14.-.-) (CYPLXXIA1) (ARP-2).;Transcript_evidence=AK108512 (DDBJ%2C Best hit);ORF_evidence=B7F956 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=002-144-A06;Expression=AK108512;TENOR=Os01t0227400-01;KEGG=Os01t0227400-01
Chr01	irgsp1_rep	CDS	7049941	7050549	.	+	0	Parent=Os01t0227400-01
Chr01	irgsp1_rep	three_prime_UTR	7050550	7050874	.	+	.	Parent=Os01t0227400-01
Chr01	irgsp1_rep	mRNA	7053100	7056373	.	+	.	ID=Os01t0227500-01;Name=Os01t0227500-01;Locus_id=Os01g0227500;Note=CytoChrome P450 family protein.;Transcript_evidence=AK120914 (DDBJ%2C Best hit);ORF_evidence=B7F956 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J023034H03;Expression=AK120914;TENOR=Os01t0227500-01;KEGG=Os01t0227500-01
Chr01	irgsp1_rep	five_prime_UTR	7053100	7053117	.	+	.	Parent=Os01t0227500-01
Chr01	irgsp1_rep	CDS	7053118	7054110	.	+	0	Parent=Os01t0227500-01
Chr01	irgsp1_rep	CDS	7055497	7056189	.	+	0	Parent=Os01t0227500-01
Chr01	irgsp1_rep	three_prime_UTR	7056190	7056373	.	+	.	Parent=Os01t0227500-01
Chr01	irgsp1_rep	mRNA	7061377	7065249	.	+	.	ID=Os01t0227700-01;Name=Os01t0227700-01;Locus_id=Os01g0227700;Note=CytoChrome P450 family protein.;Transcript_evidence=AK241935 (DDBJ%2C Best hit);ORF_evidence=Q8W0B4 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J075083L18;TENOR=Os01t0227700-01;KEGG=Os01t0227700-01
Chr01	irgsp1_rep	five_prime_UTR	7061377	7061400	.	+	.	Parent=Os01t0227700-01
Chr01	irgsp1_rep	CDS	7061401	7062390	.	+	0	Parent=Os01t0227700-01
Chr01	irgsp1_rep	CDS	7064562	7065191	.	+	0	Parent=Os01t0227700-01
Chr01	irgsp1_rep	three_prime_UTR	7065192	7065249	.	+	.	Parent=Os01t0227700-01
Chr01	irgsp1_rep	mRNA	7071481	7073788	.	+	.	ID=Os01t0227800-01;Name=Os01t0227800-01;Locus_id=Os01g0227800;Note=Similar to cDNA%2C clone: J075083L18%2C full insert sequence.;Transcript_evidence=AK287590 (DDBJ%2C Best hit);ORF_evidence=B7F956 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J065046D19;Oryzabase=22502;TENOR=Os01t0227800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	7071481	7071538	.	+	.	Parent=Os01t0227800-01
Chr01	irgsp1_rep	CDS	7071539	7072522	.	+	0	Parent=Os01t0227800-01
Chr01	irgsp1_rep	CDS	7072982	7073620	.	+	0	Parent=Os01t0227800-01
Chr01	irgsp1_rep	three_prime_UTR	7073621	7073788	.	+	.	Parent=Os01t0227800-01
Chr01	irgsp1_rep	mRNA	7085873	7089172	.	-	.	ID=Os01t0228300-01;Name=Os01t0228300-01;Locus_id=Os01g0228300;Note=Mpv17/PMP22 family protein.;Transcript_evidence=AK061358 (DDBJ%2C Best hit);ORF_evidence=B6SUV8 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Mpv17/PMP22 (IPR007248);NIAS_FLcDNA=006-304-B09;Expression=AK061358;TENOR=Os01t0228300-01;KEGG=Os01t0228300-01
Chr01	irgsp1_rep	five_prime_UTR	7089118	7089172	.	-	.	Parent=Os01t0228300-01
Chr01	irgsp1_rep	CDS	7088941	7089117	.	-	0	Parent=Os01t0228300-01
Chr01	irgsp1_rep	CDS	7087777	7087868	.	-	0	Parent=Os01t0228300-01
Chr01	irgsp1_rep	CDS	7086140	7086539	.	-	1	Parent=Os01t0228300-01
Chr01	irgsp1_rep	three_prime_UTR	7085873	7086139	.	-	.	Parent=Os01t0228300-01
Chr01	irgsp1_rep	mRNA	7092034	7095315	.	+	.	ID=Os01t0228400-01;Name=Os01t0228400-01;Locus_id=Os01g0228400;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK105248 (DDBJ%2C Best hit);ORF_evidence=B6SVA6 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-114-A12;Expression=AK105248;TENOR=Os01t0228400-01;KEGG=Os01t0228400-01
Chr01	irgsp1_rep	five_prime_UTR	7092034	7092288	.	+	.	Parent=Os01t0228400-01
Chr01	irgsp1_rep	five_prime_UTR	7092938	7092969	.	+	.	Parent=Os01t0228400-01
Chr01	irgsp1_rep	CDS	7092970	7093068	.	+	0	Parent=Os01t0228400-01
Chr01	irgsp1_rep	CDS	7093175	7094131	.	+	0	Parent=Os01t0228400-01
Chr01	irgsp1_rep	CDS	7094210	7095064	.	+	0	Parent=Os01t0228400-01
Chr01	irgsp1_rep	three_prime_UTR	7095065	7095315	.	+	.	Parent=Os01t0228400-01
Chr01	irgsp1_rep	mRNA	7092967	7095091	.	-	.	ID=Os01t0228450-00;Name=Os01t0228450-00;Locus_id=Os01g0228450;Note=Hypothetical protein.;Transcript_evidence=tplb0043a22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0228450-00
Chr01	irgsp1_rep	five_prime_UTR	7094855	7095091	.	-	.	Parent=Os01t0228450-00
Chr01	irgsp1_rep	CDS	7094210	7094854	.	-	0	Parent=Os01t0228450-00
Chr01	irgsp1_rep	CDS	7093220	7094131	.	-	0	Parent=Os01t0228450-00
Chr01	irgsp1_rep	CDS	7092967	7093073	.	-	0	Parent=Os01t0228450-00
Chr01	irgsp1_rep	mRNA	7095864	7097381	.	-	.	ID=Os01t0228500-01;Name=Os01t0228500-01;Locus_id=Os01g0228500;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK119627 (DDBJ%2C Best hit);ORF_evidence=B6TDG9 (UniProt);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=002-125-E07;Expression=AK119627;TENOR=Os01t0228500-01;KEGG=Os01t0228500-01
Chr01	irgsp1_rep	five_prime_UTR	7097313	7097381	.	-	.	Parent=Os01t0228500-01
Chr01	irgsp1_rep	CDS	7096785	7097312	.	-	0	Parent=Os01t0228500-01
Chr01	irgsp1_rep	CDS	7096337	7096522	.	-	0	Parent=Os01t0228500-01
Chr01	irgsp1_rep	CDS	7095953	7096231	.	-	0	Parent=Os01t0228500-01
Chr01	irgsp1_rep	three_prime_UTR	7095864	7095952	.	-	.	Parent=Os01t0228500-01
Chr01	irgsp1_rep	mRNA	7100073	7103266	.	-	.	ID=Os01t0228600-01;Name=Os01t0228600-01;Locus_id=Os01g0228600;RAP-DB Gene Symbol Synonym(s)=OsHPR2%2C HPR2%2C OsHPR2-2;RAP-DB Gene Name Synonym(s)=hydroxypyruvate reductase 2%2C cytosolic HPR;Oryzabase Gene Symbol Synonym(s)=OsHPR2%2C HPR2%2C OsHPR2-1%2C OsHPR2-2;Oryzabase Gene Name Synonym(s)=hydroxypyruvate reductase 2%2C cytosolic HPR;Note=Cytosolic hydroxypyruvate reductase%2C NADPH-dependent HPR%2C Photorespiratory metabolism;Transcript_evidence=AK069655;ORF_evidence=Q8W0A4;GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: NAD binding (GO:0051287);InterPro=NAD(P)-binding domain (IPR016040),D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain (IPR006139),D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding domain (IPR006140);NIAS_FLcDNA=J023031I17;Manual Curation=January 20%2C 2017;Literature_PMID=24401104;Oryzabase=15627;Expression=AK069655;TENOR=Os01t0228600-01;KEGG=Os01t0228600-01
Chr01	irgsp1_rep	five_prime_UTR	7103011	7103266	.	-	.	Parent=Os01t0228600-01
Chr01	irgsp1_rep	CDS	7102579	7103010	.	-	0	Parent=Os01t0228600-01
Chr01	irgsp1_rep	CDS	7100260	7100778	.	-	0	Parent=Os01t0228600-01
Chr01	irgsp1_rep	three_prime_UTR	7100073	7100259	.	-	.	Parent=Os01t0228600-01
Chr01	irgsp1_rep	mRNA	7100984	7103159	.	-	.	ID=Os01t0228600-02;Name=Os01t0228600-02;Locus_id=Os01g0228600;RAP-DB Gene Symbol Synonym(s)=OsHPR2-1;Oryzabase Gene Symbol Synonym(s)=OsHPR2%2C HPR2%2C OsHPR2-1%2C OsHPR2-2;Oryzabase Gene Name Synonym(s)=hydroxypyruvate reductase 2%2C cytosolic HPR;Note=Cytosolic hydroxypyruvate reductase%2C NADPH-dependent HPR%2C Photorespiratory metabolism;Transcript_evidence=AK101390;ORF_evidence=Q5N7Y9;GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: NAD binding (GO:0051287);InterPro=NAD(P)-binding domain (IPR016040),D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain (IPR006139),D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding domain (IPR006140),D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding domain conserved site 1 (IPR029752);NIAS_FLcDNA=J033036K01;Manual Curation=January 20%2C 2017;Literature_PMID=24401104;Oryzabase=15627;Expression=AK101390;TENOR=Os01t0228600-02;KEGG=Os01t0228600-02
Chr01	irgsp1_rep	five_prime_UTR	7103011	7103159	.	-	.	Parent=Os01t0228600-02
Chr01	irgsp1_rep	CDS	7102579	7103010	.	-	0	Parent=Os01t0228600-02
Chr01	irgsp1_rep	CDS	7101186	7101704	.	-	0	Parent=Os01t0228600-02
Chr01	irgsp1_rep	three_prime_UTR	7100984	7101185	.	-	.	Parent=Os01t0228600-02
Chr01	irgsp1_rep	mRNA	7100070	7103144	.	-	.	ID=Os01t0228600-03;Name=Os01t0228600-03;Locus_id=Os01g0228600;Oryzabase Gene Symbol Synonym(s)=OsHPR2%2C HPR2%2C OsHPR2-1%2C OsHPR2-2;Oryzabase Gene Name Synonym(s)=hydroxypyruvate reductase 2%2C cytosolic HPR;Note=Similar to 2-hydroxyacid dehydrogenase (AGR_L_379p).;Transcript_evidence=AK059778 (DDBJ%2C Best hit);ORF_evidence=NP_001150094.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: cofactor binding (GO:0048037),Molecular Function: NAD binding (GO:0051287);InterPro=D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain (IPR006139),D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding (IPR006140),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=006-204-B03;Oryzabase=15627;TENOR=Os01t0228600-03
Chr01	irgsp1_rep	five_prime_UTR	7103011	7103144	.	-	.	Parent=Os01t0228600-03
Chr01	irgsp1_rep	CDS	7102579	7103010	.	-	0	Parent=Os01t0228600-03
Chr01	irgsp1_rep	CDS	7100260	7100778	.	-	0	Parent=Os01t0228600-03
Chr01	irgsp1_rep	three_prime_UTR	7100070	7100259	.	-	.	Parent=Os01t0228600-03
Chr01	irgsp1_rep	mRNA	7104701	7109095	.	-	.	ID=Os01t0228800-01;Name=Os01t0228800-01;Locus_id=Os01g0228800;CGSNL Gene Symbol=RBP213;CGSNL Gene Name=RNA-BINDING PROTEIN 213;Oryzabase Gene Symbol Synonym(s)=OsRBP213%2C RBP-213%2C OsRBP-213;Oryzabase Gene Name Synonym(s)=RNA-Binding Protein 213;Note=Conserved hypothetical protein.;Transcript_evidence=AK065657 (DDBJ%2C Best hit);ORF_evidence=B8AB02 (UniProt);NIAS_FLcDNA=J013042E14;Oryzabase=22720;Expression=AK065657;TENOR=Os01t0228800-01;KEGG=Os01t0228800-01
Chr01	irgsp1_rep	five_prime_UTR	7108886	7109095	.	-	.	Parent=Os01t0228800-01
Chr01	irgsp1_rep	five_prime_UTR	7107973	7108065	.	-	.	Parent=Os01t0228800-01
Chr01	irgsp1_rep	five_prime_UTR	7107838	7107849	.	-	.	Parent=Os01t0228800-01
Chr01	irgsp1_rep	CDS	7106545	7107837	.	-	0	Parent=Os01t0228800-01
Chr01	irgsp1_rep	CDS	7106208	7106328	.	-	0	Parent=Os01t0228800-01
Chr01	irgsp1_rep	CDS	7104966	7105615	.	-	2	Parent=Os01t0228800-01
Chr01	irgsp1_rep	three_prime_UTR	7104701	7104965	.	-	.	Parent=Os01t0228800-01
Chr01	irgsp1_rep	mRNA	7105504	7106630	.	-	.	ID=Os01t0228800-02;Name=Os01t0228800-02;Locus_id=Os01g0228800;CGSNL Gene Symbol=RBP213;CGSNL Gene Name=RNA-BINDING PROTEIN 213;Oryzabase Gene Symbol Synonym(s)=OsRBP213%2C RBP-213%2C OsRBP-213;Oryzabase Gene Name Synonym(s)=RNA-Binding Protein 213;Note=Similar to cDNA clone:J013042E14%2C full insert sequence.;Transcript_evidence=AK058920 (DDBJ%2C Best hit);ORF_evidence=Q5N7Z2 (UniProt);NIAS_FLcDNA=001-009-B09;Oryzabase=22720;TENOR=Os01t0228800-02
Chr01	irgsp1_rep	five_prime_UTR	7106629	7106630	.	-	.	Parent=Os01t0228800-02
Chr01	irgsp1_rep	CDS	7106545	7106628	.	-	0	Parent=Os01t0228800-02
Chr01	irgsp1_rep	CDS	7106208	7106328	.	-	0	Parent=Os01t0228800-02
Chr01	irgsp1_rep	CDS	7105504	7105615	.	-	2	Parent=Os01t0228800-02
Chr01	irgsp1_rep	mRNA	7115785	7124100	.	-	.	ID=Os01t0228901-01;Name=Os01t0228901-01;Locus_id=Os01g0228901;Note=Hypothetical gene.;Transcript_evidence=AK318601 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100066E24;TENOR=Os01t0228901-01;KEGG=Os01t0228901-01
Chr01	irgsp1_rep	five_prime_UTR	7123632	7124100	.	-	.	Parent=Os01t0228901-01
Chr01	irgsp1_rep	five_prime_UTR	7123183	7123392	.	-	.	Parent=Os01t0228901-01
Chr01	irgsp1_rep	five_prime_UTR	7122865	7122949	.	-	.	Parent=Os01t0228901-01
Chr01	irgsp1_rep	five_prime_UTR	7121849	7122054	.	-	.	Parent=Os01t0228901-01
Chr01	irgsp1_rep	five_prime_UTR	7120386	7121633	.	-	.	Parent=Os01t0228901-01
Chr01	irgsp1_rep	CDS	7120062	7120385	.	-	0	Parent=Os01t0228901-01
Chr01	irgsp1_rep	three_prime_UTR	7119845	7120061	.	-	.	Parent=Os01t0228901-01
Chr01	irgsp1_rep	three_prime_UTR	7119310	7119438	.	-	.	Parent=Os01t0228901-01
Chr01	irgsp1_rep	three_prime_UTR	7118823	7118926	.	-	.	Parent=Os01t0228901-01
Chr01	irgsp1_rep	three_prime_UTR	7118637	7118731	.	-	.	Parent=Os01t0228901-01
Chr01	irgsp1_rep	three_prime_UTR	7117948	7118005	.	-	.	Parent=Os01t0228901-01
Chr01	irgsp1_rep	three_prime_UTR	7117285	7117339	.	-	.	Parent=Os01t0228901-01
Chr01	irgsp1_rep	three_prime_UTR	7116964	7117202	.	-	.	Parent=Os01t0228901-01
Chr01	irgsp1_rep	three_prime_UTR	7115785	7116141	.	-	.	Parent=Os01t0228901-01
Chr01	irgsp1_rep	mRNA	7121191	7123857	.	+	.	ID=Os01t0229000-00;Name=Os01t0229000-00;Locus_id=Os01g0229000;Note=Similar to Transcription factor myb.;Transcript_evidence=AJ495793 (DDBJ%2C Best hit);ORF_evidence=Q5QT32 (UniProt);TENOR=Os01t0229000-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	7121191	7121192	.	+	.	Parent=Os01t0229000-00
Chr01	irgsp1_rep	CDS	7121193	7121633	.	+	0	Parent=Os01t0229000-00
Chr01	irgsp1_rep	CDS	7121849	7122054	.	+	0	Parent=Os01t0229000-00
Chr01	irgsp1_rep	CDS	7122865	7122949	.	+	1	Parent=Os01t0229000-00
Chr01	irgsp1_rep	CDS	7123183	7123392	.	+	0	Parent=Os01t0229000-00
Chr01	irgsp1_rep	CDS	7123632	7123763	.	+	0	Parent=Os01t0229000-00
Chr01	irgsp1_rep	three_prime_UTR	7123764	7123857	.	+	.	Parent=Os01t0229000-00
Chr01	irgsp1_rep	mRNA	7127505	7128899	.	-	.	ID=Os01t0229100-01;Name=Os01t0229100-01;Locus_id=Os01g0229100;Note=Similar to Eukaryotic translation initiation factor 3 subunit 6-interacting protein.;Transcript_evidence=AK061285 (DDBJ%2C Best hit);ORF_evidence=B6SYA1 (UniProt);InterPro=Translation initiation factor 3 complex%2C subunit L (IPR019382);NIAS_FLcDNA=006-212-G09;Expression=AK061285;TENOR=Os01t0229100-01;KEGG=Os01t0229100-01
Chr01	irgsp1_rep	five_prime_UTR	7128861	7128899	.	-	.	Parent=Os01t0229100-01
Chr01	irgsp1_rep	CDS	7128327	7128860	.	-	0	Parent=Os01t0229100-01
Chr01	irgsp1_rep	CDS	7127752	7128090	.	-	0	Parent=Os01t0229100-01
Chr01	irgsp1_rep	three_prime_UTR	7127505	7127751	.	-	.	Parent=Os01t0229100-01
Chr01	irgsp1_rep	mRNA	7125406	7128890	.	-	.	ID=Os01t0229100-02;Name=Os01t0229100-02;Locus_id=Os01g0229100;Note=Protein-tyrosine phosphatase%2C active site domain containing protein.;Transcript_evidence=AK070838 (DDBJ%2C Best hit);ORF_evidence=B6SYA1 (UniProt);InterPro=Translation initiation factor 3 complex%2C subunit L (IPR019382);NIAS_FLcDNA=J023073J07;Expression=AK070838;TENOR=Os01t0229100-02;KEGG=Os01t0229100-02
Chr01	irgsp1_rep	five_prime_UTR	7128861	7128890	.	-	.	Parent=Os01t0229100-02
Chr01	irgsp1_rep	CDS	7128327	7128860	.	-	0	Parent=Os01t0229100-02
Chr01	irgsp1_rep	CDS	7127759	7128090	.	-	0	Parent=Os01t0229100-02
Chr01	irgsp1_rep	CDS	7127126	7127465	.	-	1	Parent=Os01t0229100-02
Chr01	irgsp1_rep	CDS	7126424	7126572	.	-	0	Parent=Os01t0229100-02
Chr01	irgsp1_rep	CDS	7126257	7126350	.	-	1	Parent=Os01t0229100-02
Chr01	irgsp1_rep	CDS	7125854	7125925	.	-	0	Parent=Os01t0229100-02
Chr01	irgsp1_rep	CDS	7125686	7125730	.	-	0	Parent=Os01t0229100-02
Chr01	irgsp1_rep	three_prime_UTR	7125406	7125685	.	-	.	Parent=Os01t0229100-02
Chr01	irgsp1_rep	mRNA	7129236	7137327	.	+	.	ID=Os01t0229200-01;Name=Os01t0229200-01;Locus_id=Os01g0229200;Note=VHS domain containing protein.;Transcript_evidence=AK066024 (DDBJ%2C Best hit);ORF_evidence=A2WMD4 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Cellular Component: intracellular (GO:0005622);InterPro=VHS (IPR002014),GAT (IPR004152),ENTH/VHS (IPR008942),VHS subgroup (IPR018205);NIAS_FLcDNA=J013047G02;Expression=AK066024;TENOR=Os01t0229200-01;KEGG=Os01t0229200-01
Chr01	irgsp1_rep	five_prime_UTR	7129236	7129396	.	+	.	Parent=Os01t0229200-01
Chr01	irgsp1_rep	CDS	7129397	7129497	.	+	0	Parent=Os01t0229200-01
Chr01	irgsp1_rep	CDS	7130944	7131022	.	+	1	Parent=Os01t0229200-01
Chr01	irgsp1_rep	CDS	7131470	7131568	.	+	0	Parent=Os01t0229200-01
Chr01	irgsp1_rep	CDS	7131654	7131767	.	+	0	Parent=Os01t0229200-01
Chr01	irgsp1_rep	CDS	7131960	7132102	.	+	0	Parent=Os01t0229200-01
Chr01	irgsp1_rep	CDS	7132716	7132797	.	+	1	Parent=Os01t0229200-01
Chr01	irgsp1_rep	CDS	7133425	7133510	.	+	0	Parent=Os01t0229200-01
Chr01	irgsp1_rep	CDS	7133879	7134112	.	+	1	Parent=Os01t0229200-01
Chr01	irgsp1_rep	CDS	7135684	7136162	.	+	1	Parent=Os01t0229200-01
Chr01	irgsp1_rep	CDS	7136309	7137027	.	+	2	Parent=Os01t0229200-01
Chr01	irgsp1_rep	three_prime_UTR	7137028	7137327	.	+	.	Parent=Os01t0229200-01
Chr01	irgsp1_rep	mRNA	7131682	7137170	.	+	.	ID=Os01t0229200-02;Name=Os01t0229200-02;Locus_id=Os01g0229200;Note=Hypothetical conserved gene.;Transcript_evidence=AK061937 (DDBJ%2C Best hit);ORF_evidence=A2WMD4 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Cellular Component: intracellular (GO:0005622);InterPro=VHS (IPR002014),GAT (IPR004152);NIAS_FLcDNA=001-042-D06;Expression=AK061937;TENOR=Os01t0229200-02;KEGG=Os01t0229200-02
Chr01	irgsp1_rep	five_prime_UTR	7131682	7131683	.	+	.	Parent=Os01t0229200-02
Chr01	irgsp1_rep	CDS	7131684	7131767	.	+	0	Parent=Os01t0229200-02
Chr01	irgsp1_rep	CDS	7131960	7132102	.	+	0	Parent=Os01t0229200-02
Chr01	irgsp1_rep	CDS	7132716	7132797	.	+	1	Parent=Os01t0229200-02
Chr01	irgsp1_rep	CDS	7133425	7133510	.	+	0	Parent=Os01t0229200-02
Chr01	irgsp1_rep	CDS	7133879	7134112	.	+	1	Parent=Os01t0229200-02
Chr01	irgsp1_rep	CDS	7135684	7136162	.	+	1	Parent=Os01t0229200-02
Chr01	irgsp1_rep	CDS	7136309	7137027	.	+	2	Parent=Os01t0229200-02
Chr01	irgsp1_rep	three_prime_UTR	7137028	7137170	.	+	.	Parent=Os01t0229200-02
Chr01	irgsp1_rep	mRNA	7134005	7137308	.	+	.	ID=Os01t0229200-03;Name=Os01t0229200-03;Locus_id=Os01g0229200;Note=Hypothetical conserved gene.;Transcript_evidence=AK071900 (DDBJ%2C Best hit);ORF_evidence=A2WMD4 (UniProt);NIAS_FLcDNA=J013057N07;Expression=AK071900;TENOR=Os01t0229200-03;KEGG=Os01t0229200-03
Chr01	irgsp1_rep	five_prime_UTR	7134005	7134005	.	+	.	Parent=Os01t0229200-03
Chr01	irgsp1_rep	CDS	7134006	7134112	.	+	0	Parent=Os01t0229200-03
Chr01	irgsp1_rep	CDS	7135684	7136162	.	+	1	Parent=Os01t0229200-03
Chr01	irgsp1_rep	CDS	7136309	7137027	.	+	2	Parent=Os01t0229200-03
Chr01	irgsp1_rep	three_prime_UTR	7137028	7137308	.	+	.	Parent=Os01t0229200-03
Chr01	irgsp1_rep	mRNA	7135877	7137195	.	+	.	ID=Os01t0229200-04;Name=Os01t0229200-04;Locus_id=Os01g0229200;Note=Hypothetical conserved gene.;Transcript_evidence=AK106136 (DDBJ%2C Best hit);ORF_evidence=A2WMD4 (UniProt);NIAS_FLcDNA=001-207-G04;Expression=AK106136;TENOR=Os01t0229200-04;KEGG=Os01t0229200-04
Chr01	irgsp1_rep	CDS	7135877	7136162	.	+	0	Parent=Os01t0229200-04
Chr01	irgsp1_rep	CDS	7136309	7137027	.	+	2	Parent=Os01t0229200-04
Chr01	irgsp1_rep	three_prime_UTR	7137028	7137195	.	+	.	Parent=Os01t0229200-04
Chr01	irgsp1_rep	mRNA	7129396	7136089	.	-	.	ID=Os01t0229250-00;Name=Os01t0229250-00;Locus_id=Os01g0229250;Note=Hypothetical gene.;Transcript_evidence=BT083949 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0229250-00
Chr01	irgsp1_rep	five_prime_UTR	7135701	7136089	.	-	.	Parent=Os01t0229250-00
Chr01	irgsp1_rep	five_prime_UTR	7133890	7134126	.	-	.	Parent=Os01t0229250-00
Chr01	irgsp1_rep	five_prime_UTR	7133411	7133520	.	-	.	Parent=Os01t0229250-00
Chr01	irgsp1_rep	five_prime_UTR	7132714	7132783	.	-	.	Parent=Os01t0229250-00
Chr01	irgsp1_rep	five_prime_UTR	7131952	7132100	.	-	.	Parent=Os01t0229250-00
Chr01	irgsp1_rep	five_prime_UTR	7131652	7131760	.	-	.	Parent=Os01t0229250-00
Chr01	irgsp1_rep	five_prime_UTR	7131514	7131566	.	-	.	Parent=Os01t0229250-00
Chr01	irgsp1_rep	CDS	7131470	7131513	.	-	0	Parent=Os01t0229250-00
Chr01	irgsp1_rep	CDS	7130943	7131022	.	-	1	Parent=Os01t0229250-00
Chr01	irgsp1_rep	CDS	7129396	7129496	.	-	2	Parent=Os01t0229250-00
Chr01	irgsp1_rep	mRNA	7157780	7164385	.	+	.	ID=Os01t0229300-01;Name=Os01t0229300-01;Locus_id=Os01g0229300;RAP-DB Gene Symbol Synonym(s)=CCP1%2C OsEMF1%2C DFO1%2C EMF1;RAP-DB Gene Name Synonym(s)=CURVED CHIMERIC PALEA 1%2C DEFORMED FLORAL ORGAN1%2C DEFORMED FLORAL ORGAN 1%2C EMBRYONIC FLOWER1%2C EMBRYONIC FLOWER 1;Oryzabase Gene Symbol Synonym(s)=DFO1%2C EMF1%2C OsDFO1%2C OsEMF1%2C CCP1%2C OsCCP1;Oryzabase Gene Name Synonym(s)=DEFORMED FLORAL ORGAN1%2C DEFORMED FLORAL ORGAN 1%2C EMBRYONIC FLOWER1%2C EMBRYONIC FLOWER 1%2C CURVED CHIMERIC PALEA 1;Note=EMBRYONIC FLOWER1 (EMF1)-like protein%2C Transcriptional regulator%2C Palea development%2C Regulation of floral organ identity;Transcript_evidence=NM_001049020,AK103364;ORF_evidence=Q5NB33;NIAS_FLcDNA=J033126N23;Manual Curation=May 15%2C 2015;Literature_PMID=25647350,25675970,11487690;Oryzabase=19256;TENOR=Os01t0229300-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	7157780	7158216	.	+	.	Parent=Os01t0229300-01
Chr01	irgsp1_rep	five_prime_UTR	7158964	7159171	.	+	.	Parent=Os01t0229300-01
Chr01	irgsp1_rep	CDS	7159172	7159356	.	+	0	Parent=Os01t0229300-01
Chr01	irgsp1_rep	CDS	7160436	7160866	.	+	1	Parent=Os01t0229300-01
Chr01	irgsp1_rep	CDS	7160953	7162061	.	+	2	Parent=Os01t0229300-01
Chr01	irgsp1_rep	CDS	7162372	7163820	.	+	0	Parent=Os01t0229300-01
Chr01	irgsp1_rep	three_prime_UTR	7163821	7163929	.	+	.	Parent=Os01t0229300-01
Chr01	irgsp1_rep	three_prime_UTR	7164014	7164385	.	+	.	Parent=Os01t0229300-01
Chr01	irgsp1_rep	mRNA	7164742	7167419	.	-	.	ID=Os01t0229400-01;Name=Os01t0229400-01;Locus_id=Os01g0229400;CGSNL Gene Symbol=RAC1;CGSNL Gene Name=RAC/ROP-TYPE GTPASE 1;Oryzabase Gene Symbol Synonym(s)=OsRAC1%2C OsRac1%2C Os Rac1%2C Rac1%2C Os-Rac1;Oryzabase Gene Name Synonym(s)=small GTP-binding protein 1%2C Rac-like GTP-binding protein 1%2C GTPase Rac homolog%2C Rice homolog of mammalian Rac-GTPase RAC1;Note=Similar to Rac-like GTP-binding protein 1.;Transcript_evidence=AK071126 (DDBJ%2C Best hit);ORF_evidence=Q9SSX0 (UniProt);GO=Biological Process: small GTPase mediated signal transduction (GO:0007264),Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Small GTPase superfamily%2C Rho type (IPR003578),Small GTP-binding protein domain (IPR005225);NIAS_FLcDNA=J023077H07;Oryzabase=2989;Expression=AK071126;TENOR=Os01t0229400-01;KEGG=Os01t0229400-01
Chr01	irgsp1_rep	five_prime_UTR	7167298	7167419	.	-	.	Parent=Os01t0229400-01
Chr01	irgsp1_rep	CDS	7167187	7167297	.	-	0	Parent=Os01t0229400-01
Chr01	irgsp1_rep	CDS	7166972	7167059	.	-	0	Parent=Os01t0229400-01
Chr01	irgsp1_rep	CDS	7166685	7166794	.	-	2	Parent=Os01t0229400-01
Chr01	irgsp1_rep	CDS	7165887	7166000	.	-	0	Parent=Os01t0229400-01
Chr01	irgsp1_rep	three_prime_UTR	7165720	7165886	.	-	.	Parent=Os01t0229400-01
Chr01	irgsp1_rep	three_prime_UTR	7165370	7165435	.	-	.	Parent=Os01t0229400-01
Chr01	irgsp1_rep	three_prime_UTR	7165148	7165254	.	-	.	Parent=Os01t0229400-01
Chr01	irgsp1_rep	three_prime_UTR	7164742	7165019	.	-	.	Parent=Os01t0229400-01
Chr01	irgsp1_rep	mRNA	7164735	7167377	.	-	.	ID=Os01t0229400-02;Name=Os01t0229400-02;Locus_id=Os01g0229400;RAP-DB Gene Symbol Synonym(s)=RAC1%2C OsRAC1%2C OsRac1%2C Os Rac1;RAP-DB Gene Name Synonym(s)=RAC/ROP-TYPE GTPASE 1%2C small GTP-binding protein 1%2C Rac-like GTP-binding protein 1%2C GTPase Rac homolog;CGSNL Gene Symbol=RAC1;CGSNL Gene Name=RAC/ROP-TYPE GTPASE 1;Oryzabase Gene Symbol Synonym(s)=OsRAC1%2C OsRac1%2C Os Rac1%2C Rac1%2C Os-Rac1;Oryzabase Gene Name Synonym(s)=small GTP-binding protein 1%2C Rac-like GTP-binding protein 1%2C GTPase Rac homolog%2C Rice homolog of mammalian Rac-GTPase RAC1;Note=Small GTP-binding protein%2C GTPase%2C Regulation of cell death%2C Disease resistance%2C Immune responses;Transcript_evidence=AB029508;ORF_evidence=Q9SSX0;GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Molecular Function: GTP binding (GO:0005525),Cellular Component: intracellular (GO:0005622),Cellular Component: membrane (GO:0016020);InterPro=Small GTPase superfamily (IPR001806),Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Ras type (IPR020849),Small GTPase superfamily%2C Rab type (IPR003579),P-loop containing nucleoside triphosphate hydrolase (IPR027417),Small GTP-binding protein domain (IPR005225);Manual Curation=November 26%2C 2014;Literature_PMID=10485927,11149940;Oryzabase=2989
Chr01	irgsp1_rep	five_prime_UTR	7167298	7167377	.	-	.	Parent=Os01t0229400-02
Chr01	irgsp1_rep	CDS	7167187	7167297	.	-	0	Parent=Os01t0229400-02
Chr01	irgsp1_rep	CDS	7166972	7167059	.	-	0	Parent=Os01t0229400-02
Chr01	irgsp1_rep	CDS	7166685	7166794	.	-	2	Parent=Os01t0229400-02
Chr01	irgsp1_rep	CDS	7165937	7166000	.	-	0	Parent=Os01t0229400-02
Chr01	irgsp1_rep	CDS	7165720	7165784	.	-	2	Parent=Os01t0229400-02
Chr01	irgsp1_rep	CDS	7165370	7165435	.	-	0	Parent=Os01t0229400-02
Chr01	irgsp1_rep	CDS	7165148	7165254	.	-	0	Parent=Os01t0229400-02
Chr01	irgsp1_rep	CDS	7164986	7165019	.	-	1	Parent=Os01t0229400-02
Chr01	irgsp1_rep	three_prime_UTR	7164735	7164985	.	-	.	Parent=Os01t0229400-02
Chr01	irgsp1_rep	mRNA	7173618	7175779	.	+	.	ID=Os01t0229500-01;Name=Os01t0229500-01;Locus_id=Os01g0229500;Note=Thioesterase superfamily domain containing protein.;Transcript_evidence=AK108111 (DDBJ%2C Best hit);ORF_evidence=NP_001147416.1 (RefSeq);InterPro=Thioesterase superfamily (IPR006683);NIAS_FLcDNA=002-139-B12;Expression=AK108111;TENOR=Os01t0229500-01;KEGG=Os01t0229500-01
Chr01	irgsp1_rep	five_prime_UTR	7173618	7173681	.	+	.	Parent=Os01t0229500-01
Chr01	irgsp1_rep	CDS	7173682	7173882	.	+	0	Parent=Os01t0229500-01
Chr01	irgsp1_rep	CDS	7174028	7174168	.	+	0	Parent=Os01t0229500-01
Chr01	irgsp1_rep	CDS	7175425	7175586	.	+	0	Parent=Os01t0229500-01
Chr01	irgsp1_rep	three_prime_UTR	7175587	7175779	.	+	.	Parent=Os01t0229500-01
Chr01	irgsp1_rep	mRNA	7176001	7177050	.	+	.	ID=Os01t0229600-01;Name=Os01t0229600-01;Locus_id=Os01g0229600;Note=Conserved hypothetical protein.;Transcript_evidence=AK107876 (DDBJ%2C Best hit);ORF_evidence=A2WMD8 (UniProt);NIAS_FLcDNA=002-134-D01;TENOR=Os01t0229600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	7176001	7176106	.	+	.	Parent=Os01t0229600-01
Chr01	irgsp1_rep	CDS	7176107	7176236	.	+	0	Parent=Os01t0229600-01
Chr01	irgsp1_rep	CDS	7176344	7176639	.	+	2	Parent=Os01t0229600-01
Chr01	irgsp1_rep	three_prime_UTR	7176640	7177050	.	+	.	Parent=Os01t0229600-01
Chr01	irgsp1_rep	mRNA	7177355	7182348	.	-	.	ID=Os01t0229700-00;Name=Os01t0229700-00;Locus_id=Os01g0229700;Oryzabase Gene Symbol Synonym(s)=OsWD40-9%2C OsPUB71;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 71%2C U-box protein 71;Note=WD40 repeat domain containing protein.;Transcript_evidence=EU967646 (DDBJ);ORF_evidence=NP_001042489.1 (RefSeq);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),U box domain (IPR003613),Soluble quinoprotein glucose/sorbosone dehydrogenase (IPR011041),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),WD40/YVTN repeat-like-containing domain (IPR015943),WD40 repeat 2 (IPR019782);Oryzabase=10690;TENOR=Os01t0229700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	7181191	7182348	.	-	0	Parent=Os01t0229700-00
Chr01	irgsp1_rep	CDS	7177355	7177621	.	-	0	Parent=Os01t0229700-00
Chr01	irgsp1_rep	mRNA	7186356	7186820	.	-	.	ID=Os01t0229800-00;Name=Os01t0229800-00;Locus_id=Os01g0229800;Note=Similar to Vegetative storage protein PNI288.;Transcript_evidence=ab initio prediction;ORF_evidence=B6T4U2 (UniProt);GO=Biological Process: nucleoside metabolic process (GO:0009116),Molecular Function: catalytic activity (GO:0003824);InterPro=Nucleoside phosphorylase domain (IPR000845),Nucleoside phosphorylase (IPR018017);TENOR=Os01t0229800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	7186356	7186820	.	-	0	Parent=Os01t0229800-00
Chr01	irgsp1_rep	mRNA	7197022	7205680	.	+	.	ID=Os01t0229900-01;Name=Os01t0229900-01;Locus_id=Os01g0229900;Note=Similar to Ubiquitin-conjugating enzyme family protein%2C expressed.;Transcript_evidence=AK065381 (DDBJ%2C Best hit);ORF_evidence=Q10F67 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135);NIAS_FLcDNA=J013003E06;Expression=AK065381;TENOR=Os01t0229900-01;KEGG=Os01t0229900-01 (EC:6.3.2.19)
Chr01	irgsp1_rep	five_prime_UTR	7197022	7197232	.	+	.	Parent=Os01t0229900-01
Chr01	irgsp1_rep	CDS	7197233	7197389	.	+	0	Parent=Os01t0229900-01
Chr01	irgsp1_rep	CDS	7199064	7199153	.	+	2	Parent=Os01t0229900-01
Chr01	irgsp1_rep	CDS	7199764	7199790	.	+	2	Parent=Os01t0229900-01
Chr01	irgsp1_rep	CDS	7200464	7200699	.	+	2	Parent=Os01t0229900-01
Chr01	irgsp1_rep	CDS	7200787	7200850	.	+	0	Parent=Os01t0229900-01
Chr01	irgsp1_rep	CDS	7201505	7201643	.	+	2	Parent=Os01t0229900-01
Chr01	irgsp1_rep	CDS	7203555	7203660	.	+	1	Parent=Os01t0229900-01
Chr01	irgsp1_rep	three_prime_UTR	7203661	7203661	.	+	.	Parent=Os01t0229900-01
Chr01	irgsp1_rep	three_prime_UTR	7203758	7205680	.	+	.	Parent=Os01t0229900-01
Chr01	irgsp1_rep	mRNA	7197059	7208459	.	+	.	ID=Os01t0229900-02;Name=Os01t0229900-02;Locus_id=Os01g0229900;Note=Similar to Shaggy-related protein kinase dzeta (EC 2.7.1.-) (ASK-dzeta).;Transcript_evidence=AK065429 (DDBJ%2C Best hit);ORF_evidence=B7EAV1 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135);NIAS_FLcDNA=J013023I02;Expression=AK065429;TENOR=Os01t0229900-02;KEGG=Os01t0229900-02 (EC:6.3.2.19)
Chr01	irgsp1_rep	five_prime_UTR	7197059	7197306	.	+	.	Parent=Os01t0229900-02
Chr01	irgsp1_rep	CDS	7197307	7197389	.	+	0	Parent=Os01t0229900-02
Chr01	irgsp1_rep	CDS	7198331	7198362	.	+	1	Parent=Os01t0229900-02
Chr01	irgsp1_rep	CDS	7199064	7199153	.	+	2	Parent=Os01t0229900-02
Chr01	irgsp1_rep	CDS	7199764	7199790	.	+	2	Parent=Os01t0229900-02
Chr01	irgsp1_rep	CDS	7200464	7200699	.	+	2	Parent=Os01t0229900-02
Chr01	irgsp1_rep	CDS	7200787	7200850	.	+	0	Parent=Os01t0229900-02
Chr01	irgsp1_rep	CDS	7201505	7201643	.	+	2	Parent=Os01t0229900-02
Chr01	irgsp1_rep	CDS	7203555	7203660	.	+	1	Parent=Os01t0229900-02
Chr01	irgsp1_rep	three_prime_UTR	7203661	7203661	.	+	.	Parent=Os01t0229900-02
Chr01	irgsp1_rep	three_prime_UTR	7203758	7204105	.	+	.	Parent=Os01t0229900-02
Chr01	irgsp1_rep	three_prime_UTR	7204432	7204573	.	+	.	Parent=Os01t0229900-02
Chr01	irgsp1_rep	three_prime_UTR	7205179	7205288	.	+	.	Parent=Os01t0229900-02
Chr01	irgsp1_rep	three_prime_UTR	7208163	7208459	.	+	.	Parent=Os01t0229900-02
Chr01	irgsp1_rep	mRNA	7206865	7209085	.	+	.	ID=Os01t0229900-03;Name=Os01t0229900-03;Locus_id=Os01g0229900;Note=Hypothetical conserved gene.;Transcript_evidence=AK107648 (DDBJ%2C Best hit);ORF_evidence=Q6Z4E1 (UniProt);NIAS_FLcDNA=002-131-F09;Expression=AK107648;TENOR=Os01t0229900-03;KEGG=Os01t0229900-03
Chr01	irgsp1_rep	five_prime_UTR	7206865	7208493	.	+	.	Parent=Os01t0229900-03
Chr01	irgsp1_rep	CDS	7208494	7208679	.	+	0	Parent=Os01t0229900-03
Chr01	irgsp1_rep	three_prime_UTR	7208680	7209085	.	+	.	Parent=Os01t0229900-03
Chr01	irgsp1_rep	mRNA	7216513	7225127	.	-	.	ID=Os01t0230200-01;Name=Os01t0230200-01;Locus_id=Os01g0230200;RAP-DB Gene Symbol Synonym(s)=OsbHLH074;RAP-DB Gene Name Synonym(s)=basic helix-loop-helix protein 074;Oryzabase Gene Symbol Synonym(s)=OsbHLH074;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 074;Note=Atypical basic helix-loop-helix transcription factor;Transcript_evidence=AK065732;ORF_evidence=Q5NB28;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Helix-loop-helix DNA-binding domain superfamily (IPR036638),Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);NIAS_FLcDNA=J013037L22;Manual Curation=April 30%2C 2020;Literature_PMID=32340222;Oryzabase=15361;Expression=AK065732;TENOR=Os01t0230200-01;KEGG=Os01t0230200-01
Chr01	irgsp1_rep	five_prime_UTR	7224934	7225127	.	-	.	Parent=Os01t0230200-01
Chr01	irgsp1_rep	CDS	7224602	7224933	.	-	0	Parent=Os01t0230200-01
Chr01	irgsp1_rep	CDS	7223940	7224297	.	-	1	Parent=Os01t0230200-01
Chr01	irgsp1_rep	CDS	7223334	7223411	.	-	0	Parent=Os01t0230200-01
Chr01	irgsp1_rep	CDS	7222927	7222992	.	-	0	Parent=Os01t0230200-01
Chr01	irgsp1_rep	CDS	7222138	7222203	.	-	0	Parent=Os01t0230200-01
Chr01	irgsp1_rep	CDS	7221032	7221091	.	-	0	Parent=Os01t0230200-01
Chr01	irgsp1_rep	CDS	7217743	7217802	.	-	0	Parent=Os01t0230200-01
Chr01	irgsp1_rep	CDS	7216863	7217063	.	-	0	Parent=Os01t0230200-01
Chr01	irgsp1_rep	three_prime_UTR	7216513	7216862	.	-	.	Parent=Os01t0230200-01
Chr01	irgsp1_rep	mRNA	7238851	7243073	.	+	.	ID=Os01t0230700-01;Name=Os01t0230700-01;Locus_id=Os01g0230700;Note=Hypothetical conserved gene.;Transcript_evidence=AK289150 (DDBJ%2C Best hit);ORF_evidence=Q9LE91 (UniProt);NIAS_FLcDNA=J090099O03;TENOR=Os01t0230700-01;KEGG=Os01t0230700-01
Chr01	irgsp1_rep	five_prime_UTR	7238851	7239720	.	+	.	Parent=Os01t0230700-01
Chr01	irgsp1_rep	CDS	7239721	7240176	.	+	0	Parent=Os01t0230700-01
Chr01	irgsp1_rep	three_prime_UTR	7240177	7243073	.	+	.	Parent=Os01t0230700-01
Chr01	irgsp1_rep	mRNA	7244982	7246003	.	-	.	ID=Os01t0230800-01;Name=Os01t0230800-01;Locus_id=Os01g0230800;Note=Conserved hypothetical protein.;Transcript_evidence=AK109258 (DDBJ%2C Best hit);ORF_evidence=Q657L2 (UniProt);NIAS_FLcDNA=002-185-A10;TENOR=Os01t0230800-01
Chr01	irgsp1_rep	five_prime_UTR	7245622	7246003	.	-	.	Parent=Os01t0230800-01
Chr01	irgsp1_rep	CDS	7245127	7245621	.	-	0	Parent=Os01t0230800-01
Chr01	irgsp1_rep	three_prime_UTR	7244982	7245126	.	-	.	Parent=Os01t0230800-01
Chr01	irgsp1_rep	mRNA	7249771	7253688	.	+	.	ID=Os01t0231000-01;Name=Os01t0231000-01;Locus_id=Os01g0231000;CGSNL Gene Symbol=IAA3;Oryzabase Gene Symbol Synonym(s)=OsIAA3;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 3;Note=Similar to Auxin-responsive protein (Aux/IAA) (Fragment).;Transcript_evidence=AK072001 (DDBJ%2C Best hit);ORF_evidence=Q5NB25 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Aux/IAA-ARF-dimerisation (IPR011525);NIAS_FLcDNA=J013094L17;Oryzabase=10458;Expression=AK072001;TENOR=Os01t0231000-01;KEGG=Os01t0231000-01
Chr01	irgsp1_rep	five_prime_UTR	7249771	7249905	.	+	.	Parent=Os01t0231000-01
Chr01	irgsp1_rep	CDS	7249906	7250267	.	+	0	Parent=Os01t0231000-01
Chr01	irgsp1_rep	CDS	7251042	7251274	.	+	1	Parent=Os01t0231000-01
Chr01	irgsp1_rep	CDS	7252128	7252224	.	+	2	Parent=Os01t0231000-01
Chr01	irgsp1_rep	CDS	7252345	7252406	.	+	1	Parent=Os01t0231000-01
Chr01	irgsp1_rep	CDS	7253287	7253324	.	+	2	Parent=Os01t0231000-01
Chr01	irgsp1_rep	three_prime_UTR	7253325	7253688	.	+	.	Parent=Os01t0231000-01
Chr01	irgsp1_rep	mRNA	7249821	7254629	.	+	.	ID=Os01t0231000-02;Name=Os01t0231000-02;Locus_id=Os01g0231000;CGSNL Gene Symbol=IAA3;Oryzabase Gene Symbol Synonym(s)=OsIAA3;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 3;Note=Similar to Auxin-responsive protein (Aux/IAA) (Fragment).;Transcript_evidence=AK066156 (DDBJ%2C Best hit);ORF_evidence=Q5NB25 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Aux/IAA-ARF-dimerisation (IPR011525);NIAS_FLcDNA=J013054L16;Oryzabase=10458;Expression=AK066156;TENOR=Os01t0231000-02;KEGG=Os01t0231000-02
Chr01	irgsp1_rep	five_prime_UTR	7249821	7249905	.	+	.	Parent=Os01t0231000-02
Chr01	irgsp1_rep	CDS	7249906	7250267	.	+	0	Parent=Os01t0231000-02
Chr01	irgsp1_rep	CDS	7251042	7251274	.	+	1	Parent=Os01t0231000-02
Chr01	irgsp1_rep	CDS	7252128	7252224	.	+	2	Parent=Os01t0231000-02
Chr01	irgsp1_rep	CDS	7252345	7252406	.	+	1	Parent=Os01t0231000-02
Chr01	irgsp1_rep	CDS	7253287	7253324	.	+	2	Parent=Os01t0231000-02
Chr01	irgsp1_rep	three_prime_UTR	7253325	7253376	.	+	.	Parent=Os01t0231000-02
Chr01	irgsp1_rep	three_prime_UTR	7254366	7254629	.	+	.	Parent=Os01t0231000-02
Chr01	irgsp1_rep	mRNA	7249868	7253703	.	+	.	ID=Os01t0231000-03;Name=Os01t0231000-03;Locus_id=Os01g0231000;CGSNL Gene Symbol=IAA3;Oryzabase Gene Symbol Synonym(s)=OsIAA3;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 3;Note=Similar to Auxin-responsive protein (Aux/IAA) (Fragment).;Transcript_evidence=AK104654 (DDBJ%2C Best hit);ORF_evidence=Q5NB25 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Aux/IAA-ARF-dimerisation (IPR011525);NIAS_FLcDNA=006-311-C04;Oryzabase=10458;Expression=AK104654;TENOR=Os01t0231000-03;KEGG=Os01t0231000-03
Chr01	irgsp1_rep	five_prime_UTR	7249868	7249905	.	+	.	Parent=Os01t0231000-03
Chr01	irgsp1_rep	CDS	7249906	7250267	.	+	0	Parent=Os01t0231000-03
Chr01	irgsp1_rep	CDS	7251042	7251274	.	+	1	Parent=Os01t0231000-03
Chr01	irgsp1_rep	CDS	7252128	7252224	.	+	2	Parent=Os01t0231000-03
Chr01	irgsp1_rep	CDS	7252345	7252406	.	+	1	Parent=Os01t0231000-03
Chr01	irgsp1_rep	CDS	7253287	7253324	.	+	2	Parent=Os01t0231000-03
Chr01	irgsp1_rep	three_prime_UTR	7253325	7253703	.	+	.	Parent=Os01t0231000-03
Chr01	irgsp1_rep	mRNA	7265286	7271209	.	+	.	ID=Os01t0231500-01;Name=Os01t0231500-01;Locus_id=Os01g0231500;Note=Similar to Casein kinase I (Fragment).;Transcript_evidence=AK111599 (DDBJ%2C Best hit);ORF_evidence=B6U0R4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013098O18;Expression=AK111599;TENOR=Os01t0231500-01;KEGG=Os01t0231500-01 (EC:2.7.11.1)
Chr01	irgsp1_rep	five_prime_UTR	7265286	7265497	.	+	.	Parent=Os01t0231500-01
Chr01	irgsp1_rep	CDS	7265498	7265573	.	+	0	Parent=Os01t0231500-01
Chr01	irgsp1_rep	CDS	7265705	7265745	.	+	2	Parent=Os01t0231500-01
Chr01	irgsp1_rep	CDS	7266339	7266408	.	+	0	Parent=Os01t0231500-01
Chr01	irgsp1_rep	CDS	7266500	7266648	.	+	2	Parent=Os01t0231500-01
Chr01	irgsp1_rep	CDS	7267143	7267238	.	+	0	Parent=Os01t0231500-01
Chr01	irgsp1_rep	CDS	7267326	7267396	.	+	0	Parent=Os01t0231500-01
Chr01	irgsp1_rep	CDS	7267510	7267571	.	+	1	Parent=Os01t0231500-01
Chr01	irgsp1_rep	CDS	7267651	7267714	.	+	2	Parent=Os01t0231500-01
Chr01	irgsp1_rep	CDS	7268608	7268692	.	+	1	Parent=Os01t0231500-01
Chr01	irgsp1_rep	CDS	7268777	7268903	.	+	0	Parent=Os01t0231500-01
Chr01	irgsp1_rep	CDS	7269016	7269080	.	+	2	Parent=Os01t0231500-01
Chr01	irgsp1_rep	CDS	7269739	7269796	.	+	0	Parent=Os01t0231500-01
Chr01	irgsp1_rep	CDS	7269927	7270066	.	+	2	Parent=Os01t0231500-01
Chr01	irgsp1_rep	CDS	7270624	7270812	.	+	0	Parent=Os01t0231500-01
Chr01	irgsp1_rep	three_prime_UTR	7270813	7270815	.	+	.	Parent=Os01t0231500-01
Chr01	irgsp1_rep	three_prime_UTR	7270910	7271209	.	+	.	Parent=Os01t0231500-01
Chr01	irgsp1_rep	mRNA	7265324	7273208	.	+	.	ID=Os01t0231500-02;Name=Os01t0231500-02;Locus_id=Os01g0231500;Note=Similar to casein kinase I isoform delta-like.;Transcript_evidence=AK111602 (DDBJ%2C Best hit);ORF_evidence=B9EUI3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013095J05;Expression=AK111602;TENOR=Os01t0231500-02;KEGG=Os01t0231500-02 (EC:2.7.11.1)
Chr01	irgsp1_rep	five_prime_UTR	7265324	7265497	.	+	.	Parent=Os01t0231500-02
Chr01	irgsp1_rep	CDS	7265498	7265573	.	+	0	Parent=Os01t0231500-02
Chr01	irgsp1_rep	CDS	7265705	7265745	.	+	2	Parent=Os01t0231500-02
Chr01	irgsp1_rep	CDS	7266339	7266408	.	+	0	Parent=Os01t0231500-02
Chr01	irgsp1_rep	CDS	7266500	7266699	.	+	2	Parent=Os01t0231500-02
Chr01	irgsp1_rep	three_prime_UTR	7266700	7267238	.	+	.	Parent=Os01t0231500-02
Chr01	irgsp1_rep	three_prime_UTR	7267326	7267396	.	+	.	Parent=Os01t0231500-02
Chr01	irgsp1_rep	three_prime_UTR	7267510	7267571	.	+	.	Parent=Os01t0231500-02
Chr01	irgsp1_rep	three_prime_UTR	7267651	7267714	.	+	.	Parent=Os01t0231500-02
Chr01	irgsp1_rep	three_prime_UTR	7268608	7268692	.	+	.	Parent=Os01t0231500-02
Chr01	irgsp1_rep	three_prime_UTR	7268777	7268903	.	+	.	Parent=Os01t0231500-02
Chr01	irgsp1_rep	three_prime_UTR	7269016	7269796	.	+	.	Parent=Os01t0231500-02
Chr01	irgsp1_rep	three_prime_UTR	7269927	7270066	.	+	.	Parent=Os01t0231500-02
Chr01	irgsp1_rep	three_prime_UTR	7270624	7270815	.	+	.	Parent=Os01t0231500-02
Chr01	irgsp1_rep	three_prime_UTR	7270910	7271620	.	+	.	Parent=Os01t0231500-02
Chr01	irgsp1_rep	three_prime_UTR	7272337	7273208	.	+	.	Parent=Os01t0231500-02
Chr01	irgsp1_rep	mRNA	7277271	7277972	.	+	.	ID=Os01t0231600-00;Name=Os01t0231600-00;Locus_id=Os01g0231600;Note=Pleckstrin homology-type domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2WMF2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Pleckstrin homology-type (IPR011993),Pleckstrin-like%2C plant (IPR013666);TENOR=Os01t0231600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	7277271	7277346	.	+	0	Parent=Os01t0231600-00
Chr01	irgsp1_rep	CDS	7277773	7277972	.	+	2	Parent=Os01t0231600-00
Chr01	irgsp1_rep	mRNA	7278745	7280241	.	-	.	ID=Os01t0231700-01;Name=Os01t0231700-01;Locus_id=Os01g0231700;Note=Similar to 60S acidic ribosomal protein P2-B (CaRP2B).;Transcript_evidence=AK107453 (DDBJ%2C Best hit);ORF_evidence=NP_001147388.1 (RefSeq);GO=Biological Process: translational elongation (GO:0006414),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein 60S (IPR001813);NIAS_FLcDNA=002-128-C07;Expression=AK107453;TENOR=Os01t0231700-01;KEGG=Os01t0231700-01
Chr01	irgsp1_rep	five_prime_UTR	7280173	7280241	.	-	.	Parent=Os01t0231700-01
Chr01	irgsp1_rep	CDS	7279975	7280172	.	-	0	Parent=Os01t0231700-01
Chr01	irgsp1_rep	CDS	7279021	7279182	.	-	0	Parent=Os01t0231700-01
Chr01	irgsp1_rep	three_prime_UTR	7278745	7279020	.	-	.	Parent=Os01t0231700-01
Chr01	irgsp1_rep	mRNA	7282051	7285991	.	+	.	ID=Os01t0231800-01;Name=Os01t0231800-01;Locus_id=Os01g0231800;Note=Similar to cDNA clone:J033025F17%2C full insert sequence.;Transcript_evidence=AK062918 (DDBJ%2C Best hit);ORF_evidence=B7ELY0 (UniProt);InterPro=Protein kinase A anchor protein%2C nuclear localisation signal domain (IPR019510);NIAS_FLcDNA=001-108-H04;TENOR=Os01t0231800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	7282051	7282083	.	+	0	Parent=Os01t0231800-01
Chr01	irgsp1_rep	CDS	7282449	7282572	.	+	0	Parent=Os01t0231800-01
Chr01	irgsp1_rep	CDS	7283489	7283604	.	+	2	Parent=Os01t0231800-01
Chr01	irgsp1_rep	CDS	7283683	7283748	.	+	0	Parent=Os01t0231800-01
Chr01	irgsp1_rep	CDS	7284157	7284247	.	+	0	Parent=Os01t0231800-01
Chr01	irgsp1_rep	CDS	7284534	7284601	.	+	2	Parent=Os01t0231800-01
Chr01	irgsp1_rep	CDS	7285325	7285362	.	+	0	Parent=Os01t0231800-01
Chr01	irgsp1_rep	CDS	7285448	7285637	.	+	1	Parent=Os01t0231800-01
Chr01	irgsp1_rep	three_prime_UTR	7285638	7285991	.	+	.	Parent=Os01t0231800-01
Chr01	irgsp1_rep	mRNA	7287974	7294209	.	+	.	ID=Os01t0231900-01;Name=Os01t0231900-01;Locus_id=Os01g0231900;Note=K Homology%2C type 1%2C subgroup domain containing protein.;Transcript_evidence=AK073280 (DDBJ%2C Best hit);ORF_evidence=B9EUI5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: RNA metabolic process (GO:0016070),Cellular Component: intracellular (GO:0005622),Cellular Component: cytoplasm (GO:0005737),Molecular Function: RNA binding (GO:0003723),Molecular Function: catalytic activity (GO:0003824);InterPro=K Homology (IPR004087),K Homology%2C type 1 (IPR004088),RNA ligase/cyclic nucleotide phosphodiesterase (IPR009097),Predicted eukaryotic LigT (IPR009210),K Homology%2C type 1%2C subgroup (IPR018111),Protein kinase A anchor protein%2C nuclear localisation signal domain (IPR019510);NIAS_FLcDNA=J033025F17;Expression=AK073280;TENOR=Os01t0231900-01;KEGG=Os01t0231900-01
Chr01	irgsp1_rep	five_prime_UTR	7287974	7288007	.	+	.	Parent=Os01t0231900-01
Chr01	irgsp1_rep	CDS	7288008	7288033	.	+	0	Parent=Os01t0231900-01
Chr01	irgsp1_rep	CDS	7288195	7288252	.	+	1	Parent=Os01t0231900-01
Chr01	irgsp1_rep	CDS	7288862	7289003	.	+	0	Parent=Os01t0231900-01
Chr01	irgsp1_rep	CDS	7289215	7289426	.	+	2	Parent=Os01t0231900-01
Chr01	irgsp1_rep	CDS	7289544	7289581	.	+	0	Parent=Os01t0231900-01
Chr01	irgsp1_rep	CDS	7289699	7289778	.	+	1	Parent=Os01t0231900-01
Chr01	irgsp1_rep	CDS	7289874	7289941	.	+	2	Parent=Os01t0231900-01
Chr01	irgsp1_rep	CDS	7291329	7291602	.	+	0	Parent=Os01t0231900-01
Chr01	irgsp1_rep	CDS	7292137	7292249	.	+	2	Parent=Os01t0231900-01
Chr01	irgsp1_rep	CDS	7292330	7292395	.	+	0	Parent=Os01t0231900-01
Chr01	irgsp1_rep	CDS	7292613	7292703	.	+	0	Parent=Os01t0231900-01
Chr01	irgsp1_rep	CDS	7293170	7293237	.	+	2	Parent=Os01t0231900-01
Chr01	irgsp1_rep	CDS	7293585	7293622	.	+	0	Parent=Os01t0231900-01
Chr01	irgsp1_rep	CDS	7293699	7293888	.	+	1	Parent=Os01t0231900-01
Chr01	irgsp1_rep	three_prime_UTR	7293889	7294209	.	+	.	Parent=Os01t0231900-01
Chr01	irgsp1_rep	mRNA	7297999	7298608	.	-	.	ID=Os01t0231950-00;Name=Os01t0231950-00;Locus_id=Os01g0231950;Note=Hypothetical gene.;Transcript_evidence=BT061568 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0231950-00;KEGG=Os01t0231950-00
Chr01	irgsp1_rep	five_prime_UTR	7298587	7298608	.	-	.	Parent=Os01t0231950-00
Chr01	irgsp1_rep	CDS	7297999	7298586	.	-	0	Parent=Os01t0231950-00
Chr01	irgsp1_rep	mRNA	7297781	7298619	.	+	.	ID=Os01t0232000-00;Name=Os01t0232000-00;Locus_id=Os01g0232000;CGSNL Gene Symbol=TIP4%3B3;CGSNL Gene Name=TONOPLAST INTRINSIC PROTEIN 4%3B3;Oryzabase Gene Symbol Synonym(s)=OsTIP4%3B3%2C TIP4.3%2C TIP4-3;Oryzabase Gene Name Synonym(s)=Probable aquaporin TIP4.3%2C Probable aquaporin TIP4-3%2C Tonoplast intrinsic protein 4-3;Note=Major intrinsic protein family protein.;Transcript_evidence=Q9LWR2 (UniProt);ORF_evidence=Q9LWR2 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: water transport (GO:0006833),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Aquaporin (IPR012269),Major intrinsic protein%2C conserved site (IPR022357),Aquaporin-like (IPR023271);Oryzabase=8386;TENOR=Os01t0232000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	7297781	7297907	.	+	0	Parent=Os01t0232000-00
Chr01	irgsp1_rep	CDS	7297991	7298619	.	+	2	Parent=Os01t0232000-00
Chr01	irgsp1_rep	mRNA	7302563	7303771	.	+	.	ID=Os01t0232100-01;Name=Os01t0232100-01;Locus_id=Os01g0232100;CGSNL Gene Symbol=TIP4%3B2;CGSNL Gene Name=TONOPLAST INTRINSIC PROTEIN 4%3B2;Oryzabase Gene Symbol Synonym(s)=OsTIP4%3B2%2C TIP4.2%2C TIP4-2;Oryzabase Gene Name Synonym(s)=Probable aquaporin TIP4.2%2C Probable aquaporin TIP4-2%2C Tonoplast intrinsic protein 4-2;Note=Similar to Tonoplast membrane integral protein ZmTIP4-3.;Transcript_evidence=AK069592 (DDBJ%2C Best hit),AK099190 (DDBJ%2C Best hit);ORF_evidence=NP_001105035.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Major intrinsic protein%2C conserved site (IPR022357),Aquaporin-like (IPR023271);NIAS_FLcDNA=J023019I12,J023108H12;Oryzabase=8385;TENOR=Os01t0232100-01
Chr01	irgsp1_rep	five_prime_UTR	7302563	7302595	.	+	.	Parent=Os01t0232100-01
Chr01	irgsp1_rep	CDS	7302596	7302737	.	+	0	Parent=Os01t0232100-01
Chr01	irgsp1_rep	CDS	7302890	7303518	.	+	2	Parent=Os01t0232100-01
Chr01	irgsp1_rep	three_prime_UTR	7303519	7303771	.	+	.	Parent=Os01t0232100-01
Chr01	irgsp1_rep	mRNA	7307881	7309458	.	-	.	ID=Os01t0232200-00;Name=Os01t0232200-00;Locus_id=Os01g0232200;Oryzabase Gene Symbol Synonym(s)=OsWD40-10;Note=WD40 repeat domain containing protein.;Transcript_evidence=EU955858 (DDBJ);ORF_evidence=Q5NB66 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);Oryzabase=10691;TENOR=Os01t0232200-00
Chr01	irgsp1_rep	CDS	7307881	7309458	.	-	0	Parent=Os01t0232200-00
Chr01	irgsp1_rep	mRNA	7325060	7332216	.	+	.	ID=Os01t0232300-01;Name=Os01t0232300-01;Locus_id=Os01g0232300;CGSNL Gene Symbol=TRZ3;CGSNL Gene Name=TRNASE Z3;Oryzabase Gene Symbol Synonym(s)=OsaTRZ3%2C OsTRZ3;Oryzabase Gene Name Synonym(s)=tRNase Z3;Note=Similar to TRZ3 (TRNASE Z 3)%3B 3'-tRNA processing endoribonuclease/ catalytic.;Transcript_evidence=AK120694 (DDBJ%2C Best hit);ORF_evidence=NP_175628.2 (RefSeq);NIAS_FLcDNA=J013170G05;Oryzabase=15224;TENOR=Os01t0232300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	7325060	7325144	.	+	.	Parent=Os01t0232300-01
Chr01	irgsp1_rep	CDS	7325145	7325561	.	+	0	Parent=Os01t0232300-01
Chr01	irgsp1_rep	CDS	7326572	7326661	.	+	0	Parent=Os01t0232300-01
Chr01	irgsp1_rep	CDS	7326938	7326982	.	+	0	Parent=Os01t0232300-01
Chr01	irgsp1_rep	CDS	7327088	7327142	.	+	0	Parent=Os01t0232300-01
Chr01	irgsp1_rep	CDS	7327245	7327288	.	+	2	Parent=Os01t0232300-01
Chr01	irgsp1_rep	CDS	7327401	7327808	.	+	0	Parent=Os01t0232300-01
Chr01	irgsp1_rep	three_prime_UTR	7327809	7329430	.	+	.	Parent=Os01t0232300-01
Chr01	irgsp1_rep	three_prime_UTR	7329514	7329564	.	+	.	Parent=Os01t0232300-01
Chr01	irgsp1_rep	three_prime_UTR	7330158	7330642	.	+	.	Parent=Os01t0232300-01
Chr01	irgsp1_rep	three_prime_UTR	7330724	7331327	.	+	.	Parent=Os01t0232300-01
Chr01	irgsp1_rep	three_prime_UTR	7331717	7332216	.	+	.	Parent=Os01t0232300-01
Chr01	irgsp1_rep	mRNA	7333827	7339181	.	+	.	ID=Os01t0232400-01;Name=Os01t0232400-01;Locus_id=Os01g0232400;Oryzabase Gene Name Synonym(s)=VHS domain protein;Note=Similar to VHS1 protein (Fragment).;Transcript_evidence=AK101990 (DDBJ%2C Best hit);ORF_evidence=B8AB14 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886);InterPro=Epsin domain%2C N-terminal (IPR001026),VHS (IPR002014),ENTH/VHS (IPR008942);NIAS_FLcDNA=J033079D23;Oryzabase=15984;Expression=AK101990;TENOR=Os01t0232400-01;KEGG=Os01t0232400-01
Chr01	irgsp1_rep	five_prime_UTR	7333827	7333979	.	+	.	Parent=Os01t0232400-01
Chr01	irgsp1_rep	CDS	7333980	7334186	.	+	0	Parent=Os01t0232400-01
Chr01	irgsp1_rep	CDS	7335511	7336269	.	+	0	Parent=Os01t0232400-01
Chr01	irgsp1_rep	CDS	7337287	7337442	.	+	0	Parent=Os01t0232400-01
Chr01	irgsp1_rep	CDS	7337615	7338538	.	+	0	Parent=Os01t0232400-01
Chr01	irgsp1_rep	CDS	7338729	7338764	.	+	0	Parent=Os01t0232400-01
Chr01	irgsp1_rep	three_prime_UTR	7338765	7339181	.	+	.	Parent=Os01t0232400-01
Chr01	irgsp1_rep	mRNA	7333897	7339244	.	+	.	ID=Os01t0232400-02;Name=Os01t0232400-02;Locus_id=Os01g0232400;Oryzabase Gene Name Synonym(s)=VHS domain protein;Note=Similar to VHS1 protein (Fragment).;Transcript_evidence=AK106519 (DDBJ%2C Best hit);ORF_evidence=B8AB14 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886);InterPro=Epsin domain%2C N-terminal (IPR001026),VHS (IPR002014),ENTH/VHS (IPR008942);NIAS_FLcDNA=002-107-C06;Oryzabase=15984;Expression=AK106519;TENOR=Os01t0232400-02;KEGG=Os01t0232400-02
Chr01	irgsp1_rep	five_prime_UTR	7333897	7333979	.	+	.	Parent=Os01t0232400-02
Chr01	irgsp1_rep	CDS	7333980	7334186	.	+	0	Parent=Os01t0232400-02
Chr01	irgsp1_rep	CDS	7335511	7336269	.	+	0	Parent=Os01t0232400-02
Chr01	irgsp1_rep	CDS	7337287	7337442	.	+	0	Parent=Os01t0232400-02
Chr01	irgsp1_rep	CDS	7337615	7338538	.	+	0	Parent=Os01t0232400-02
Chr01	irgsp1_rep	CDS	7338729	7338764	.	+	0	Parent=Os01t0232400-02
Chr01	irgsp1_rep	three_prime_UTR	7338765	7339244	.	+	.	Parent=Os01t0232400-02
Chr01	irgsp1_rep	mRNA	7335045	7336010	.	-	.	ID=Os01t0232450-01;Name=Os01t0232450-01;Locus_id=Os01g0232450;Note=Conserved hypothetical protein.;Transcript_evidence=AK242981 (DDBJ%2C Best hit);ORF_evidence=NP_001172244.1 (RefSeq);NIAS_FLcDNA=J090094G19;TENOR=Os01t0232450-01;KEGG=Os01t0232450-01
Chr01	irgsp1_rep	five_prime_UTR	7335846	7336010	.	-	.	Parent=Os01t0232450-01
Chr01	irgsp1_rep	CDS	7335606	7335845	.	-	0	Parent=Os01t0232450-01
Chr01	irgsp1_rep	three_prime_UTR	7335045	7335605	.	-	.	Parent=Os01t0232450-01
Chr01	irgsp1_rep	mRNA	7340717	7345302	.	+	.	ID=Os01t0232500-01;Name=Os01t0232500-01;Locus_id=Os01g0232500;CGSNL Gene Symbol=UBC42;CGSNL Gene Name=UBIQUITIN-CONJUGATING ENZYME 42;Oryzabase Gene Symbol Synonym(s)=OsUBC42;Oryzabase Gene Name Synonym(s)=Ubiquitin-conjugating enzyme 42;Note=Ubiquitin-conjugating enzyme/RWD-like domain containing protein.;Transcript_evidence=AK067926 (DDBJ%2C Best hit);ORF_evidence=A2ZR04 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135);NIAS_FLcDNA=J013124F15;Oryzabase=19575;Expression=AK067926;TENOR=Os01t0232500-01;KEGG=Os01t0232500-01
Chr01	irgsp1_rep	five_prime_UTR	7340717	7340795	.	+	.	Parent=Os01t0232500-01
Chr01	irgsp1_rep	CDS	7340796	7340806	.	+	0	Parent=Os01t0232500-01
Chr01	irgsp1_rep	CDS	7340923	7341040	.	+	1	Parent=Os01t0232500-01
Chr01	irgsp1_rep	CDS	7342230	7342637	.	+	0	Parent=Os01t0232500-01
Chr01	irgsp1_rep	CDS	7342726	7342789	.	+	0	Parent=Os01t0232500-01
Chr01	irgsp1_rep	CDS	7343654	7343793	.	+	2	Parent=Os01t0232500-01
Chr01	irgsp1_rep	CDS	7343878	7344189	.	+	0	Parent=Os01t0232500-01
Chr01	irgsp1_rep	CDS	7344733	7345137	.	+	0	Parent=Os01t0232500-01
Chr01	irgsp1_rep	three_prime_UTR	7345138	7345302	.	+	.	Parent=Os01t0232500-01
Chr01	irgsp1_rep	mRNA	7343761	7345299	.	+	.	ID=Os01t0232500-02;Name=Os01t0232500-02;Locus_id=Os01g0232500;CGSNL Gene Symbol=UBC42;CGSNL Gene Name=UBIQUITIN-CONJUGATING ENZYME 42;Oryzabase Gene Symbol Synonym(s)=OsUBC42;Oryzabase Gene Name Synonym(s)=Ubiquitin-conjugating enzyme 42;Note=Similar to PFU3/UBC26 (UBIQUITIN-CONJUGATING ENZYME 26)%3B ubiquitin-protein ligase.;Transcript_evidence=AK119659 (DDBJ%2C Best hit);ORF_evidence=A2ZR04 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135);NIAS_FLcDNA=002-130-H11;Oryzabase=19575;Expression=AK119659;TENOR=Os01t0232500-02;KEGG=Os01t0232500-02 (EC:6.3.2.19)
Chr01	irgsp1_rep	CDS	7343761	7343793	.	+	0	Parent=Os01t0232500-02
Chr01	irgsp1_rep	CDS	7343878	7344189	.	+	0	Parent=Os01t0232500-02
Chr01	irgsp1_rep	CDS	7344733	7345137	.	+	0	Parent=Os01t0232500-02
Chr01	irgsp1_rep	three_prime_UTR	7345138	7345299	.	+	.	Parent=Os01t0232500-02
Chr01	irgsp1_rep	mRNA	7344009	7345200	.	-	.	ID=Os01t0232550-00;Name=Os01t0232550-00;Locus_id=Os01g0232550;Note=Hypothetical conserved gene.;Transcript_evidence=EU941213 (DDBJ);ORF_evidence=B9EUI8 (UniProt);TENOR=Os01t0232550-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	7344681	7345200	.	-	0	Parent=Os01t0232550-00
Chr01	irgsp1_rep	CDS	7344165	7344217	.	-	2	Parent=Os01t0232550-00
Chr01	irgsp1_rep	three_prime_UTR	7344009	7344164	.	-	.	Parent=Os01t0232550-00
Chr01	irgsp1_rep	mRNA	7348585	7352104	.	+	.	ID=Os01t0232700-01;Name=Os01t0232700-01;Locus_id=Os01g0232700;Note=Similar to Histidinol dehydrogenase%2C chloroplast precursor (EC 1.1.1.23) (HDH). Splice isoform 2.;Transcript_evidence=AK069972 (DDBJ%2C Best hit);ORF_evidence=A2WMG4 (UniProt);GO=Biological Process: histidine biosynthetic process (GO:0000105),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: histidinol dehydrogenase activity (GO:0004399),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: NAD binding (GO:0051287);InterPro=Histidinol dehydrogenase%2C conserved site (IPR001692),Histidinol dehydrogenase (IPR012131),Aldehyde/histidinol dehydrogenase (IPR016161);NIAS_FLcDNA=J023037L20;Expression=AK069972;TENOR=Os01t0232700-01;KEGG=Os01t0232700-01 (EC:1.1.1.23)
Chr01	irgsp1_rep	five_prime_UTR	7348585	7348679	.	+	.	Parent=Os01t0232700-01
Chr01	irgsp1_rep	CDS	7348680	7348886	.	+	0	Parent=Os01t0232700-01
Chr01	irgsp1_rep	CDS	7349030	7349082	.	+	0	Parent=Os01t0232700-01
Chr01	irgsp1_rep	CDS	7349175	7349247	.	+	1	Parent=Os01t0232700-01
Chr01	irgsp1_rep	CDS	7349493	7349594	.	+	0	Parent=Os01t0232700-01
Chr01	irgsp1_rep	CDS	7349697	7349798	.	+	0	Parent=Os01t0232700-01
Chr01	irgsp1_rep	CDS	7349888	7349959	.	+	0	Parent=Os01t0232700-01
Chr01	irgsp1_rep	CDS	7350067	7350129	.	+	0	Parent=Os01t0232700-01
Chr01	irgsp1_rep	CDS	7350210	7350251	.	+	0	Parent=Os01t0232700-01
Chr01	irgsp1_rep	CDS	7350620	7350679	.	+	0	Parent=Os01t0232700-01
Chr01	irgsp1_rep	CDS	7350755	7350865	.	+	0	Parent=Os01t0232700-01
Chr01	irgsp1_rep	CDS	7351044	7351214	.	+	0	Parent=Os01t0232700-01
Chr01	irgsp1_rep	CDS	7351392	7351482	.	+	0	Parent=Os01t0232700-01
Chr01	irgsp1_rep	CDS	7351571	7351845	.	+	2	Parent=Os01t0232700-01
Chr01	irgsp1_rep	three_prime_UTR	7351846	7352104	.	+	.	Parent=Os01t0232700-01
Chr01	irgsp1_rep	mRNA	7350206	7352096	.	+	.	ID=Os01t0232700-02;Name=Os01t0232700-02;Locus_id=Os01g0232700;Note=Similar to Histidinol dehydrogenase.;Transcript_evidence=AK104113 (DDBJ%2C Best hit),AK061778 (DDBJ%2C Best hit);ORF_evidence=A2WMG4 (UniProt);GO=Biological Process: histidine biosynthetic process (GO:0000105),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: histidinol dehydrogenase activity (GO:0004399),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: NAD binding (GO:0051287);InterPro=Histidinol dehydrogenase%2C conserved site (IPR001692),Histidinol dehydrogenase (IPR012131),Aldehyde/histidinol dehydrogenase (IPR016161);NIAS_FLcDNA=006-202-H02,001-039-D09;Expression=AK104113;TENOR=Os01t0232700-02;KEGG=Os01t0232700-02 (EC:1.1.1.23)
Chr01	irgsp1_rep	five_prime_UTR	7350206	7350206	.	+	.	Parent=Os01t0232700-02
Chr01	irgsp1_rep	CDS	7350207	7350251	.	+	0	Parent=Os01t0232700-02
Chr01	irgsp1_rep	CDS	7350620	7350679	.	+	0	Parent=Os01t0232700-02
Chr01	irgsp1_rep	CDS	7350755	7350865	.	+	0	Parent=Os01t0232700-02
Chr01	irgsp1_rep	CDS	7351044	7351214	.	+	0	Parent=Os01t0232700-02
Chr01	irgsp1_rep	CDS	7351392	7351482	.	+	0	Parent=Os01t0232700-02
Chr01	irgsp1_rep	CDS	7351571	7351845	.	+	2	Parent=Os01t0232700-02
Chr01	irgsp1_rep	three_prime_UTR	7351846	7352096	.	+	.	Parent=Os01t0232700-02
Chr01	irgsp1_rep	mRNA	7352223	7357332	.	-	.	ID=Os01t0232800-01;Name=Os01t0232800-01;Locus_id=Os01g0232800;Note=Similar to KOB1.;Transcript_evidence=AK318572 (DDBJ%2C Best hit);ORF_evidence=NP_001151449.1 (RefSeq);NIAS_FLcDNA=J090038D13;TENOR=Os01t0232800-01;KEGG=Os01t0232800-01
Chr01	irgsp1_rep	five_prime_UTR	7357332	7357332	.	-	.	Parent=Os01t0232800-01
Chr01	irgsp1_rep	CDS	7357161	7357331	.	-	0	Parent=Os01t0232800-01
Chr01	irgsp1_rep	CDS	7356168	7356317	.	-	0	Parent=Os01t0232800-01
Chr01	irgsp1_rep	CDS	7356032	7356084	.	-	0	Parent=Os01t0232800-01
Chr01	irgsp1_rep	CDS	7355515	7355623	.	-	1	Parent=Os01t0232800-01
Chr01	irgsp1_rep	CDS	7354658	7354792	.	-	0	Parent=Os01t0232800-01
Chr01	irgsp1_rep	CDS	7354541	7354585	.	-	0	Parent=Os01t0232800-01
Chr01	irgsp1_rep	CDS	7353604	7353791	.	-	0	Parent=Os01t0232800-01
Chr01	irgsp1_rep	CDS	7353343	7353484	.	-	1	Parent=Os01t0232800-01
Chr01	irgsp1_rep	CDS	7353036	7353082	.	-	0	Parent=Os01t0232800-01
Chr01	irgsp1_rep	CDS	7352860	7352949	.	-	1	Parent=Os01t0232800-01
Chr01	irgsp1_rep	CDS	7352518	7352770	.	-	1	Parent=Os01t0232800-01
Chr01	irgsp1_rep	three_prime_UTR	7352223	7352517	.	-	.	Parent=Os01t0232800-01
Chr01	irgsp1_rep	mRNA	7363663	7366111	.	-	.	ID=Os01t0233000-01;Name=Os01t0233000-01;Locus_id=Os01g0233000;Oryzabase Gene Symbol Synonym(s)=OsDREPP1%2C DREPP1%2C RS1;Oryzabase Gene Name Synonym(s)=developmentally regulated plasma membrane polypeptide 1;Note=DREPP plasma membrane polypeptide family protein.;Transcript_evidence=AK065256 (DDBJ%2C Best hit);ORF_evidence=A2WMG6 (UniProt);InterPro=DREPP plasma membrane polypeptide (IPR008469);NIAS_FLcDNA=J013002J14;Oryzabase=19299;Expression=AK065256;TENOR=Os01t0233000-01;KEGG=Os01t0233000-01
Chr01	irgsp1_rep	five_prime_UTR	7366006	7366111	.	-	.	Parent=Os01t0233000-01
Chr01	irgsp1_rep	five_prime_UTR	7365814	7365849	.	-	.	Parent=Os01t0233000-01
Chr01	irgsp1_rep	CDS	7365709	7365813	.	-	0	Parent=Os01t0233000-01
Chr01	irgsp1_rep	CDS	7365515	7365604	.	-	0	Parent=Os01t0233000-01
Chr01	irgsp1_rep	CDS	7365336	7365423	.	-	0	Parent=Os01t0233000-01
Chr01	irgsp1_rep	CDS	7364147	7364478	.	-	2	Parent=Os01t0233000-01
Chr01	irgsp1_rep	three_prime_UTR	7363663	7364146	.	-	.	Parent=Os01t0233000-01
Chr01	irgsp1_rep	mRNA	7370362	7381112	.	-	.	ID=Os01t0233100-00;Name=Os01t0233100-00;Locus_id=Os01g0233100;Note=Similar to Cyclin-A1-2.;Transcript_evidence=tplb0028l11 (Wheat FLcDNA);ORF_evidence=Q0JPA4 (UniProt);GO=Biological Process: regulation of cyclin-dependent protein kinase activity (GO:0000079),Biological Process: regulation of cell cycle (GO:0051726),Cellular Component: nucleus (GO:0005634),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin%2C C-terminal (IPR004367),Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763),Cyclin A/B/D/E (IPR014400);TENOR=Os01t0233100-00
Chr01	irgsp1_rep	five_prime_UTR	7381052	7381112	.	-	.	Parent=Os01t0233100-00
Chr01	irgsp1_rep	CDS	7380890	7381051	.	-	0	Parent=Os01t0233100-00
Chr01	irgsp1_rep	CDS	7379635	7380043	.	-	0	Parent=Os01t0233100-00
Chr01	irgsp1_rep	CDS	7379418	7379551	.	-	2	Parent=Os01t0233100-00
Chr01	irgsp1_rep	CDS	7371706	7371798	.	-	0	Parent=Os01t0233100-00
Chr01	irgsp1_rep	CDS	7371479	7371612	.	-	0	Parent=Os01t0233100-00
Chr01	irgsp1_rep	CDS	7371316	7371391	.	-	1	Parent=Os01t0233100-00
Chr01	irgsp1_rep	CDS	7371175	7371251	.	-	0	Parent=Os01t0233100-00
Chr01	irgsp1_rep	CDS	7371060	7371093	.	-	1	Parent=Os01t0233100-00
Chr01	irgsp1_rep	CDS	7370825	7370974	.	-	0	Parent=Os01t0233100-00
Chr01	irgsp1_rep	CDS	7370581	7370715	.	-	0	Parent=Os01t0233100-00
Chr01	irgsp1_rep	CDS	7370419	7370490	.	-	0	Parent=Os01t0233100-00
Chr01	irgsp1_rep	three_prime_UTR	7370362	7370418	.	-	.	Parent=Os01t0233100-00
Chr01	irgsp1_rep	mRNA	7385705	7388444	.	+	.	ID=Os01t0233400-00;Name=Os01t0233400-00;Locus_id=Os01g0233400;Note=Histone H4 acetyltransferase%2C NuA4 complex%2C Eaf6 domain containing protein.;Transcript_evidence=CT830710 (DDBJ%2C Secondary hit);ORF_evidence=NP_001042511.2 (RefSeq);InterPro=Histone H4 acetyltransferase%2C NuA4 complex%2C Eaf6 (IPR015418);TENOR=Os01t0233400-00
Chr01	irgsp1_rep	five_prime_UTR	7385705	7385894	.	+	.	Parent=Os01t0233400-00
Chr01	irgsp1_rep	CDS	7385895	7386047	.	+	0	Parent=Os01t0233400-00
Chr01	irgsp1_rep	CDS	7386831	7386931	.	+	0	Parent=Os01t0233400-00
Chr01	irgsp1_rep	CDS	7387499	7387568	.	+	1	Parent=Os01t0233400-00
Chr01	irgsp1_rep	CDS	7387725	7387752	.	+	0	Parent=Os01t0233400-00
Chr01	irgsp1_rep	CDS	7387835	7387892	.	+	2	Parent=Os01t0233400-00
Chr01	irgsp1_rep	CDS	7388068	7388164	.	+	1	Parent=Os01t0233400-00
Chr01	irgsp1_rep	three_prime_UTR	7388165	7388444	.	+	.	Parent=Os01t0233400-00
Chr01	irgsp1_rep	mRNA	7389373	7393708	.	-	.	ID=Os01t0233500-01;Name=Os01t0233500-01;Locus_id=Os01g0233500;CGSNL Gene Symbol=CYCA1%3B1;CGSNL Gene Name=CYCLIN-A1-1;Oryzabase Gene Symbol Synonym(s)=CycA1%3B1%2C CycA1%3Bos%3B1%2C Orysa%3BCycA1%3B1%2C CYCA2.3%2C OscycA1%3B1%2C CYCA1-1%2C OsCYCA1-1;Oryzabase Gene Name Synonym(s)=A-type cyclin 1%3B1%2C A-type cyclin 1-1;Note=Cyclin.;Transcript_evidence=AK063476 (DDBJ%2C Best hit);ORF_evidence=Q7F830 (UniProt);GO=Biological Process: regulation of cyclin-dependent protein kinase activity (GO:0000079),Biological Process: regulation of cell cycle (GO:0051726),Cellular Component: nucleus (GO:0005634),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin%2C C-terminal (IPR004367),Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763),Cyclin A/B/D/E (IPR014400);NIAS_FLcDNA=001-116-B02;Oryzabase=8985;TENOR=Os01t0233500-01
Chr01	irgsp1_rep	five_prime_UTR	7393594	7393708	.	-	.	Parent=Os01t0233500-01
Chr01	irgsp1_rep	CDS	7393381	7393593	.	-	0	Parent=Os01t0233500-01
Chr01	irgsp1_rep	CDS	7392125	7392533	.	-	0	Parent=Os01t0233500-01
Chr01	irgsp1_rep	CDS	7391885	7392018	.	-	2	Parent=Os01t0233500-01
Chr01	irgsp1_rep	CDS	7391082	7391174	.	-	0	Parent=Os01t0233500-01
Chr01	irgsp1_rep	CDS	7390855	7390988	.	-	0	Parent=Os01t0233500-01
Chr01	irgsp1_rep	CDS	7390692	7390767	.	-	1	Parent=Os01t0233500-01
Chr01	irgsp1_rep	CDS	7390551	7390627	.	-	0	Parent=Os01t0233500-01
Chr01	irgsp1_rep	CDS	7390436	7390469	.	-	1	Parent=Os01t0233500-01
Chr01	irgsp1_rep	CDS	7390201	7390350	.	-	0	Parent=Os01t0233500-01
Chr01	irgsp1_rep	CDS	7389957	7390091	.	-	0	Parent=Os01t0233500-01
Chr01	irgsp1_rep	CDS	7389804	7389875	.	-	0	Parent=Os01t0233500-01
Chr01	irgsp1_rep	three_prime_UTR	7389373	7389803	.	-	.	Parent=Os01t0233500-01
Chr01	irgsp1_rep	mRNA	7400509	7404310	.	+	.	ID=Os01t0233800-01;Name=Os01t0233800-01;Locus_id=Os01g0233800;Note=Similar to Viroid symptom modulation protein.;Transcript_evidence=AK069983 (DDBJ%2C Best hit);ORF_evidence=Q41297 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023037H09;Expression=AK069983;TENOR=Os01t0233800-01;KEGG=Os01t0233800-01
Chr01	irgsp1_rep	five_prime_UTR	7400509	7400728	.	+	.	Parent=Os01t0233800-01
Chr01	irgsp1_rep	CDS	7401798	7402522	.	+	0	Parent=Os01t0233800-01
Chr01	irgsp1_rep	CDS	7403192	7404065	.	+	1	Parent=Os01t0233800-01
Chr01	irgsp1_rep	three_prime_UTR	7404066	7404310	.	+	.	Parent=Os01t0233800-01
Chr01	irgsp1_rep	mRNA	7403181	7404029	.	-	.	ID=Os01t0233850-00;Name=Os01t0233850-00;Locus_id=Os01g0233850;Note=Hypothetical gene.;Transcript_evidence=EU943630 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0233850-00;KEGG=Os01t0233850-00
Chr01	irgsp1_rep	five_prime_UTR	7403892	7404029	.	-	.	Parent=Os01t0233850-00
Chr01	irgsp1_rep	CDS	7403238	7403891	.	-	0	Parent=Os01t0233850-00
Chr01	irgsp1_rep	three_prime_UTR	7403181	7403237	.	-	.	Parent=Os01t0233850-00
Chr01	irgsp1_rep	mRNA	7404911	7409638	.	-	.	ID=Os01t0233900-01;Name=Os01t0233900-01;Locus_id=Os01g0233900;CGSNL Gene Symbol=UBC37;CGSNL Gene Name=UBIQUITIN-CONJUGATING ENZYME 37;Oryzabase Gene Symbol Synonym(s)=OsUBC37;Oryzabase Gene Name Synonym(s)=Ubiquitin-conjugating enzyme 37;Note=Similar to cDNA clone:J013003E06%2C full insert sequence.;Transcript_evidence=AK100714 (DDBJ%2C Best hit);ORF_evidence=B7EAV1 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135);NIAS_FLcDNA=J023115K12;Oryzabase=19571;TENOR=Os01t0233900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	7409395	7409638	.	-	0	Parent=Os01t0233900-01
Chr01	irgsp1_rep	CDS	7408590	7408679	.	-	2	Parent=Os01t0233900-01
Chr01	irgsp1_rep	CDS	7407957	7407983	.	-	2	Parent=Os01t0233900-01
Chr01	irgsp1_rep	CDS	7407378	7407616	.	-	2	Parent=Os01t0233900-01
Chr01	irgsp1_rep	CDS	7407226	7407289	.	-	0	Parent=Os01t0233900-01
Chr01	irgsp1_rep	CDS	7406470	7406609	.	-	2	Parent=Os01t0233900-01
Chr01	irgsp1_rep	CDS	7406057	7406368	.	-	0	Parent=Os01t0233900-01
Chr01	irgsp1_rep	CDS	7405209	7405490	.	-	0	Parent=Os01t0233900-01
Chr01	irgsp1_rep	three_prime_UTR	7404911	7405208	.	-	.	Parent=Os01t0233900-01
Chr01	irgsp1_rep	mRNA	7414867	7415353	.	-	.	ID=Os01t0234001-01;Name=Os01t0234001-01;Locus_id=Os01g0234001;Note=Hypothetical conserved gene.;Transcript_evidence=AK241763 (DDBJ%2C Best hit);ORF_evidence=B9G6H6 (UniProt);NIAS_FLcDNA=J065205E14;TENOR=Os01t0234001-01;KEGG=Os01t0234001-01
Chr01	irgsp1_rep	five_prime_UTR	7415353	7415353	.	-	.	Parent=Os01t0234001-01
Chr01	irgsp1_rep	CDS	7415197	7415352	.	-	0	Parent=Os01t0234001-01
Chr01	irgsp1_rep	CDS	7415084	7415116	.	-	0	Parent=Os01t0234001-01
Chr01	irgsp1_rep	three_prime_UTR	7414867	7415083	.	-	.	Parent=Os01t0234001-01
Chr01	irgsp1_rep	mRNA	7417303	7422388	.	+	.	ID=Os01t0234100-01;Name=Os01t0234100-01;Locus_id=Os01g0234100;Note=Transcriptional factor B3 family protein.;Transcript_evidence=AK106332 (DDBJ%2C Best hit);ORF_evidence=Q0JP99 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300),AT hook%2C DNA-binding motif (IPR017956);NIAS_FLcDNA=002-101-F09;Expression=AK106332;TENOR=Os01t0234100-01;KEGG=Os01t0234100-01
Chr01	irgsp1_rep	five_prime_UTR	7417303	7417433	.	+	.	Parent=Os01t0234100-01
Chr01	irgsp1_rep	CDS	7417434	7417457	.	+	0	Parent=Os01t0234100-01
Chr01	irgsp1_rep	CDS	7417993	7418124	.	+	0	Parent=Os01t0234100-01
Chr01	irgsp1_rep	CDS	7418989	7419051	.	+	0	Parent=Os01t0234100-01
Chr01	irgsp1_rep	CDS	7419632	7419736	.	+	0	Parent=Os01t0234100-01
Chr01	irgsp1_rep	CDS	7420066	7420097	.	+	0	Parent=Os01t0234100-01
Chr01	irgsp1_rep	CDS	7420173	7420317	.	+	1	Parent=Os01t0234100-01
Chr01	irgsp1_rep	CDS	7420760	7420964	.	+	0	Parent=Os01t0234100-01
Chr01	irgsp1_rep	CDS	7421132	7421224	.	+	2	Parent=Os01t0234100-01
Chr01	irgsp1_rep	CDS	7421333	7422021	.	+	2	Parent=Os01t0234100-01
Chr01	irgsp1_rep	three_prime_UTR	7422022	7422388	.	+	.	Parent=Os01t0234100-01
Chr01	irgsp1_rep	mRNA	7424284	7427642	.	-	.	ID=Os01t0234200-00;Name=Os01t0234200-00;Locus_id=Os01g0234200;Note=Similar to DNA topoisomerase 2.;Transcript_evidence=ab initio prediction;ORF_evidence=A2WMH7 (UniProt);GO=Biological Process: DNA topological change (GO:0006265),Cellular Component: Chromosome (GO:0005694),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA topoisomerase (ATP-hydrolyzing) activity (GO:0003918),Molecular Function: ATP binding (GO:0005524);InterPro=DNA topoisomerase%2C type IIA%2C subunit B/N-terminal (IPR001241),ATPase-like%2C ATP-binding domain (IPR003594),DNA topoisomerase%2C type IIA%2C subunit B%2C domain 2 (IPR013506),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Ribosomal protein S5 domain 2-type fold (IPR020568);TENOR=Os01t0234200-00
Chr01	irgsp1_rep	CDS	7427097	7427642	.	-	0	Parent=Os01t0234200-00
Chr01	irgsp1_rep	CDS	7425034	7425329	.	-	0	Parent=Os01t0234200-00
Chr01	irgsp1_rep	CDS	7424844	7424913	.	-	1	Parent=Os01t0234200-00
Chr01	irgsp1_rep	CDS	7424479	7424749	.	-	0	Parent=Os01t0234200-00
Chr01	irgsp1_rep	CDS	7424284	7424366	.	-	2	Parent=Os01t0234200-00
Chr01	irgsp1_rep	mRNA	7429384	7430544	.	+	.	ID=Os01t0234300-00;Name=Os01t0234300-00;Locus_id=Os01g0234300;Note=Similar to Pectinesterase.;Transcript_evidence=ab initio prediction;ORF_evidence=B9EUJ6 (UniProt);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectinesterase inhibitor (IPR006501),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);TENOR=Os01t0234300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	7429384	7430544	.	+	0	Parent=Os01t0234300-00
Chr01	irgsp1_rep	mRNA	7430381	7431332	.	-	.	ID=Os01t0234433-00;Name=Os01t0234433-00;Locus_id=Os01g0234433;Note=Hypothetical protein.;Transcript_evidence=EU943103 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0234433-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	7430562	7431332	.	-	0	Parent=Os01t0234433-00
Chr01	irgsp1_rep	three_prime_UTR	7430381	7430561	.	-	.	Parent=Os01t0234433-00
Chr01	irgsp1_rep	mRNA	7430568	7431335	.	+	.	ID=Os01t0234499-00;Name=Os01t0234499-00;Locus_id=Os01g0234499;Note=Similar to Pectinesterase.;Transcript_evidence=ab initio prediction;ORF_evidence=B9EUJ6 (UniProt);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),Pectinesterase%2C active site (IPR018040);TENOR=Os01t0234499-00
Chr01	irgsp1_rep	CDS	7430568	7431335	.	+	0	Parent=Os01t0234499-00
Chr01	irgsp1_rep	mRNA	7434983	7435055	.	+	.	ID=Os01t0234566-00;Name=Os01t0234566-00;Locus_id=Os01g0234566;Note=Non-protein coding transcript.;Transcript_evidence=X06283 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0234566-00
Chr01	irgsp1_rep	exon	7434983	7435055	.	+	.	Parent=Os01t0234566-00
Chr01	irgsp1_rep	mRNA	7437869	7438888	.	+	.	ID=Os01t0234700-01;Name=Os01t0234700-01;Locus_id=Os01g0234700;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK108936 (DDBJ%2C Best hit);ORF_evidence=NP_001147348.1 (RefSeq);NIAS_FLcDNA=002-153-B02;Expression=AK108936;TENOR=Os01t0234700-01;KEGG=Os01t0234700-01
Chr01	irgsp1_rep	five_prime_UTR	7437869	7437893	.	+	.	Parent=Os01t0234700-01
Chr01	irgsp1_rep	CDS	7437894	7438673	.	+	0	Parent=Os01t0234700-01
Chr01	irgsp1_rep	three_prime_UTR	7438674	7438888	.	+	.	Parent=Os01t0234700-01
Chr01	irgsp1_rep	mRNA	7439093	7443214	.	-	.	ID=Os01t0234800-01;Name=Os01t0234800-01;Locus_id=Os01g0234800;Note=Similar to 25.3 kDa vesicle transport protein.;Transcript_evidence=AK103163 (DDBJ%2C Best hit);ORF_evidence=B6TMY9 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: integral to membrane (GO:0016021);InterPro=Longin (IPR010908),Longin-like (IPR011012);NIAS_FLcDNA=J033121D12;TENOR=Os01t0234800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	7443042	7443214	.	-	.	Parent=Os01t0234800-01
Chr01	irgsp1_rep	five_prime_UTR	7442012	7442062	.	-	.	Parent=Os01t0234800-01
Chr01	irgsp1_rep	CDS	7441824	7442011	.	-	0	Parent=Os01t0234800-01
Chr01	irgsp1_rep	CDS	7441109	7441269	.	-	1	Parent=Os01t0234800-01
Chr01	irgsp1_rep	CDS	7440941	7441026	.	-	2	Parent=Os01t0234800-01
Chr01	irgsp1_rep	CDS	7440371	7440376	.	-	0	Parent=Os01t0234800-01
Chr01	irgsp1_rep	three_prime_UTR	7440300	7440370	.	-	.	Parent=Os01t0234800-01
Chr01	irgsp1_rep	three_prime_UTR	7439093	7439656	.	-	.	Parent=Os01t0234800-01
Chr01	irgsp1_rep	mRNA	7438862	7439430	.	-	.	ID=Os01t0234800-02;Name=Os01t0234800-02;Locus_id=Os01g0234800;Note=Non-protein coding transcript.;Transcript_evidence=AK063827 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-122-A10;TENOR=Os01t0234800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	exon	7438862	7439430	.	-	.	Parent=Os01t0234800-02
Chr01	irgsp1_rep	mRNA	7443724	7447193	.	-	.	ID=Os01t0234850-01;Name=Os01t0234850-01;Locus_id=Os01g0234850;Oryzabase Gene Symbol Synonym(s)=OsEnS-3;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 3;Note=Hypothetical conserved gene.;Transcript_evidence=AK242318 (DDBJ%2C Best hit);ORF_evidence=NP_001172247.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Phosphatidylinositol 3-/4-kinase%2C catalytic (IPR000403),Ubiquitin (IPR000626),Ubiquitin supergroup (IPR019955);NIAS_FLcDNA=J075195P06;Oryzabase=18350;TENOR=Os01t0234850-01;KEGG=Os01t0234850-01
Chr01	irgsp1_rep	five_prime_UTR	7447068	7447193	.	-	.	Parent=Os01t0234850-01
Chr01	irgsp1_rep	five_prime_UTR	7446123	7446224	.	-	.	Parent=Os01t0234850-01
Chr01	irgsp1_rep	CDS	7444755	7446122	.	-	0	Parent=Os01t0234850-01
Chr01	irgsp1_rep	three_prime_UTR	7443724	7444754	.	-	.	Parent=Os01t0234850-01
Chr01	irgsp1_rep	mRNA	7450936	7453683	.	-	.	ID=Os01t0234900-01;Name=Os01t0234900-01;Locus_id=Os01g0234900;Oryzabase Gene Symbol Synonym(s)=OsRFPHC-14%2C OsSTA9;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPHC-14%2C RING-HC protein 14;Note=Similar to Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven in absentia homolog 5). Splice isoform 2.;Transcript_evidence=AK120816 (DDBJ%2C Best hit);ORF_evidence=B8Q8B9 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Biological Process: multicellular organismal development (GO:0007275),Biological Process: protein ubiquitination (GO:0016567),Cellular Component: nucleus (GO:0005634),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Seven-in-absentia protein%2C sina (IPR004162),TRAF-like (IPR008974),Zinc finger%2C SIAH-type (IPR013010),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),TRAF-type (IPR013322),Seven In Absentia Homolog-type (IPR013323),Seven-in-absentia protein%2C TRAF-like domain (IPR018121);NIAS_FLcDNA=J023014O08;Oryzabase=11797;Expression=AK120816;TENOR=Os01t0234900-01;KEGG=Os01t0234900-01 (EC:6.3.2.19)
Chr01	irgsp1_rep	five_prime_UTR	7453252	7453683	.	-	.	Parent=Os01t0234900-01
Chr01	irgsp1_rep	CDS	7452955	7453251	.	-	0	Parent=Os01t0234900-01
Chr01	irgsp1_rep	CDS	7451637	7452023	.	-	0	Parent=Os01t0234900-01
Chr01	irgsp1_rep	CDS	7451144	7451503	.	-	0	Parent=Os01t0234900-01
Chr01	irgsp1_rep	three_prime_UTR	7450936	7451143	.	-	.	Parent=Os01t0234900-01
Chr01	irgsp1_rep	mRNA	7457835	7459834	.	+	.	ID=Os01t0235100-01;Name=Os01t0235100-01;Locus_id=Os01g0235100;Note=Similar to predicted protein.;Transcript_evidence=AK287587 (DDBJ%2C Best hit);ORF_evidence=Q5NAX5 (UniProt);NIAS_FLcDNA=J065045G15;TENOR=Os01t0235100-01;KEGG=Os01t0235100-01
Chr01	irgsp1_rep	five_prime_UTR	7457835	7457937	.	+	.	Parent=Os01t0235100-01
Chr01	irgsp1_rep	CDS	7457938	7458221	.	+	0	Parent=Os01t0235100-01
Chr01	irgsp1_rep	CDS	7458826	7459061	.	+	1	Parent=Os01t0235100-01
Chr01	irgsp1_rep	CDS	7459501	7459517	.	+	2	Parent=Os01t0235100-01
Chr01	irgsp1_rep	three_prime_UTR	7459518	7459834	.	+	.	Parent=Os01t0235100-01
Chr01	irgsp1_rep	mRNA	7460616	7465533	.	-	.	ID=Os01t0235200-01;Name=Os01t0235200-01;Locus_id=Os01g0235200;Note=Conserved hypothetical protein.;Transcript_evidence=AK103537 (DDBJ%2C Best hit);ORF_evidence=B9EUK0 (UniProt);NIAS_FLcDNA=J033132B14;TENOR=Os01t0235200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	7465419	7465533	.	-	.	Parent=Os01t0235200-01
Chr01	irgsp1_rep	five_prime_UTR	7465050	7465328	.	-	.	Parent=Os01t0235200-01
Chr01	irgsp1_rep	CDS	7464857	7465049	.	-	0	Parent=Os01t0235200-01
Chr01	irgsp1_rep	CDS	7463054	7463288	.	-	2	Parent=Os01t0235200-01
Chr01	irgsp1_rep	CDS	7462750	7462941	.	-	1	Parent=Os01t0235200-01
Chr01	irgsp1_rep	CDS	7462291	7462672	.	-	1	Parent=Os01t0235200-01
Chr01	irgsp1_rep	three_prime_UTR	7461869	7462290	.	-	.	Parent=Os01t0235200-01
Chr01	irgsp1_rep	three_prime_UTR	7460616	7460926	.	-	.	Parent=Os01t0235200-01
Chr01	irgsp1_rep	mRNA	7460350	7465499	.	-	.	ID=Os01t0235200-02;Name=Os01t0235200-02;Locus_id=Os01g0235200;Note=Conserved hypothetical protein.;Transcript_evidence=AK064013 (DDBJ%2C Best hit);ORF_evidence=B9EUK0 (UniProt);NIAS_FLcDNA=001-124-H02;Expression=AK064013;TENOR=Os01t0235200-02;KEGG=Os01t0235200-02
Chr01	irgsp1_rep	five_prime_UTR	7465419	7465499	.	-	.	Parent=Os01t0235200-02
Chr01	irgsp1_rep	five_prime_UTR	7465186	7465328	.	-	.	Parent=Os01t0235200-02
Chr01	irgsp1_rep	CDS	7465111	7465185	.	-	0	Parent=Os01t0235200-02
Chr01	irgsp1_rep	CDS	7464857	7464971	.	-	0	Parent=Os01t0235200-02
Chr01	irgsp1_rep	CDS	7463054	7463288	.	-	2	Parent=Os01t0235200-02
Chr01	irgsp1_rep	CDS	7462750	7462941	.	-	1	Parent=Os01t0235200-02
Chr01	irgsp1_rep	CDS	7462352	7462672	.	-	1	Parent=Os01t0235200-02
Chr01	irgsp1_rep	CDS	7461869	7462094	.	-	1	Parent=Os01t0235200-02
Chr01	irgsp1_rep	CDS	7460844	7460926	.	-	0	Parent=Os01t0235200-02
Chr01	irgsp1_rep	CDS	7460539	7460548	.	-	1	Parent=Os01t0235200-02
Chr01	irgsp1_rep	three_prime_UTR	7460350	7460538	.	-	.	Parent=Os01t0235200-02
Chr01	irgsp1_rep	mRNA	7470710	7472729	.	+	.	ID=Os01t0235300-01;Name=Os01t0235300-01;Locus_id=Os01g0235300;Note=SOUL haem-binding protein domain containing protein.;Transcript_evidence=AK059862 (DDBJ%2C Best hit);ORF_evidence=B6SR01 (UniProt);InterPro=SOUL haem-binding protein (IPR006917),Regulatory factor%2C effector%2C bacterial (IPR011256);NIAS_FLcDNA=006-207-C09;Expression=AK059862;TENOR=Os01t0235300-01;KEGG=Os01t0235300-01
Chr01	irgsp1_rep	five_prime_UTR	7470710	7470811	.	+	.	Parent=Os01t0235300-01
Chr01	irgsp1_rep	CDS	7470812	7471020	.	+	0	Parent=Os01t0235300-01
Chr01	irgsp1_rep	CDS	7472013	7472448	.	+	1	Parent=Os01t0235300-01
Chr01	irgsp1_rep	three_prime_UTR	7472449	7472729	.	+	.	Parent=Os01t0235300-01
Chr01	irgsp1_rep	mRNA	7470737	7472727	.	+	.	ID=Os01t0235300-02;Name=Os01t0235300-02;Locus_id=Os01g0235300;Note=SOUL haem-binding protein domain containing protein.;Transcript_evidence=AK102961 (DDBJ%2C Best hit),AK104591 (DDBJ%2C Best hit);ORF_evidence=B6SR01 (UniProt);InterPro=SOUL haem-binding protein (IPR006917),Regulatory factor%2C effector%2C bacterial (IPR011256);NIAS_FLcDNA=J033115I02,006-308-A11;TENOR=Os01t0235300-02
Chr01	irgsp1_rep	five_prime_UTR	7470737	7470811	.	+	.	Parent=Os01t0235300-02
Chr01	irgsp1_rep	CDS	7470812	7471020	.	+	0	Parent=Os01t0235300-02
Chr01	irgsp1_rep	CDS	7472013	7472448	.	+	1	Parent=Os01t0235300-02
Chr01	irgsp1_rep	three_prime_UTR	7472449	7472727	.	+	.	Parent=Os01t0235300-02
Chr01	irgsp1_rep	mRNA	7470743	7471026	.	-	.	ID=Os01t0235325-00;Name=Os01t0235325-00;Locus_id=Os01g0235325;Note=Hypothetical protein.;Transcript_evidence=EU943029 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0235325-00
Chr01	irgsp1_rep	five_prime_UTR	7471026	7471026	.	-	.	Parent=Os01t0235325-00
Chr01	irgsp1_rep	CDS	7470743	7471025	.	-	0	Parent=Os01t0235325-00
Chr01	irgsp1_rep	mRNA	7473271	7476621	.	-	.	ID=Os01t0235350-00;Name=Os01t0235350-00;Locus_id=Os01g0235350;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9EUK1 (UniProt);TENOR=Os01t0235350-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	7476558	7476621	.	-	0	Parent=Os01t0235350-00
Chr01	irgsp1_rep	CDS	7475902	7476426	.	-	2	Parent=Os01t0235350-00
Chr01	irgsp1_rep	CDS	7474689	7475821	.	-	2	Parent=Os01t0235350-00
Chr01	irgsp1_rep	CDS	7473855	7474043	.	-	0	Parent=Os01t0235350-00
Chr01	irgsp1_rep	CDS	7473271	7473462	.	-	0	Parent=Os01t0235350-00
Chr01	irgsp1_rep	mRNA	7481061	7482814	.	-	.	ID=Os01t0235400-01;Name=Os01t0235400-01;Locus_id=Os01g0235400;Note=Similar to predicted protein.;Transcript_evidence=AK064696 (DDBJ%2C Best hit);ORF_evidence=Q9ZPY7 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Molecular Function: binding (GO:0005488),Molecular Function: protein transporter activity (GO:0008565);InterPro=Importin-beta%2C N-terminal (IPR001494),Armadillo-like helical (IPR011989),Exportin/Importin%2C Cse1-like (IPR013713),Armadillo-type fold (IPR016024);NIAS_FLcDNA=002-116-F11;TENOR=Os01t0235400-01
Chr01	irgsp1_rep	five_prime_UTR	7482689	7482814	.	-	.	Parent=Os01t0235400-01
Chr01	irgsp1_rep	CDS	7481061	7482688	.	-	0	Parent=Os01t0235400-01
Chr01	irgsp1_rep	mRNA	7477678	7481366	.	-	.	ID=Os01t0235400-02;Name=Os01t0235400-02;Locus_id=Os01g0235400;Note=Similar to Importin-alpha re-exporter (Cellular apoptosis susceptibility protein homolog).;Transcript_evidence=AK105595 (DDBJ%2C Best hit);ORF_evidence=Q9ZPY7 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=CAS/CSE%2C C-terminal (IPR005043),Armadillo-like helical (IPR011989),Exportin/Importin%2C Cse1-like (IPR013713),Armadillo-type fold (IPR016024);NIAS_FLcDNA=001-129-B02;Expression=AK105595;TENOR=Os01t0235400-02;KEGG=Os01t0235400-02
Chr01	irgsp1_rep	five_prime_UTR	7481366	7481366	.	-	.	Parent=Os01t0235400-02
Chr01	irgsp1_rep	CDS	7479737	7481365	.	-	0	Parent=Os01t0235400-02
Chr01	irgsp1_rep	three_prime_UTR	7477678	7478220	.	-	.	Parent=Os01t0235400-02
Chr01	irgsp1_rep	mRNA	7484910	7485725	.	+	.	ID=Os01t0235500-01;Name=Os01t0235500-01;Locus_id=Os01g0235500;Note=Conserved hypothetical protein.;Transcript_evidence=AK121404 (DDBJ%2C Best hit);ORF_evidence=A2WMJ1 (UniProt);NIAS_FLcDNA=J023132B02;Expression=AK121404;TENOR=Os01t0235500-01;KEGG=Os01t0235500-01
Chr01	irgsp1_rep	five_prime_UTR	7484910	7484993	.	+	.	Parent=Os01t0235500-01
Chr01	irgsp1_rep	CDS	7484994	7485467	.	+	0	Parent=Os01t0235500-01
Chr01	irgsp1_rep	three_prime_UTR	7485468	7485725	.	+	.	Parent=Os01t0235500-01
Chr01	irgsp1_rep	mRNA	7495062	7498355	.	+	.	ID=Os01t0235632-00;Name=Os01t0235632-00;Locus_id=Os01g0235632;Note=Hypothetical protein.;Transcript_evidence=tplb0028d05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0235632-00
Chr01	irgsp1_rep	five_prime_UTR	7495062	7496855	.	+	.	Parent=Os01t0235632-00
Chr01	irgsp1_rep	CDS	7496856	7497260	.	+	0	Parent=Os01t0235632-00
Chr01	irgsp1_rep	three_prime_UTR	7497261	7497341	.	+	.	Parent=Os01t0235632-00
Chr01	irgsp1_rep	three_prime_UTR	7498044	7498355	.	+	.	Parent=Os01t0235632-00
Chr01	irgsp1_rep	mRNA	7495121	7498347	.	-	.	ID=Os01t0235700-01;Name=Os01t0235700-01;Locus_id=Os01g0235700;Oryzabase Gene Symbol Synonym(s)=OsbHLH008%2C bHLH008%2C OsMYL2%2C MYL2%2C DLN6%2C OsDLN6%2C OsMYC1%2C MYC1;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 008%2C OsMYC2-like protein 2%2C MYC2-like protein 2%2C DLN repressor 6%2C DLN motif protein 6%2C Myelocytomatosis oncogene transcription factor 1;Note=Similar to BHLH transcription factor (Fragment).;Transcript_evidence=AK064943 (DDBJ%2C Best hit);ORF_evidence=Q5IWM1 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J013000P13;Oryzabase=15302;TENOR=Os01t0235700-01
Chr01	irgsp1_rep	five_prime_UTR	7498047	7498347	.	-	.	Parent=Os01t0235700-01
Chr01	irgsp1_rep	five_prime_UTR	7497340	7497344	.	-	.	Parent=Os01t0235700-01
Chr01	irgsp1_rep	CDS	7495486	7497339	.	-	0	Parent=Os01t0235700-01
Chr01	irgsp1_rep	three_prime_UTR	7495121	7495485	.	-	.	Parent=Os01t0235700-01
Chr01	irgsp1_rep	mRNA	7495121	7498178	.	-	.	ID=Os01t0235700-02;Name=Os01t0235700-02;Locus_id=Os01g0235700;Oryzabase Gene Symbol Synonym(s)=OsbHLH008%2C bHLH008%2C OsMYL2%2C MYL2%2C DLN6%2C OsDLN6%2C OsMYC1%2C MYC1;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 008%2C OsMYC2-like protein 2%2C MYC2-like protein 2%2C DLN repressor 6%2C DLN motif protein 6%2C Myelocytomatosis oncogene transcription factor 1;Note=Similar to BHLH transcription factor (Fragment).;Transcript_evidence=AK121013 (DDBJ%2C Best hit);ORF_evidence=Q5IWM1 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J023047M20;Oryzabase=15302;TENOR=Os01t0235700-02
Chr01	irgsp1_rep	five_prime_UTR	7498047	7498178	.	-	.	Parent=Os01t0235700-02
Chr01	irgsp1_rep	five_prime_UTR	7497340	7497344	.	-	.	Parent=Os01t0235700-02
Chr01	irgsp1_rep	CDS	7495486	7497339	.	-	0	Parent=Os01t0235700-02
Chr01	irgsp1_rep	three_prime_UTR	7495121	7495485	.	-	.	Parent=Os01t0235700-02
Chr01	irgsp1_rep	mRNA	7507583	7511672	.	+	.	ID=Os01t0235800-01;Name=Os01t0235800-01;Locus_id=Os01g0235800;Note=K Homology domain containing protein.;Transcript_evidence=AK058731 (DDBJ%2C Best hit);ORF_evidence=B9EUK2 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=K Homology (IPR004087),K Homology%2C type 1 (IPR004088),K Homology%2C type 1%2C subgroup (IPR018111);NIAS_FLcDNA=001-019-F10;TENOR=Os01t0235800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	7507583	7507723	.	+	0	Parent=Os01t0235800-01
Chr01	irgsp1_rep	CDS	7507841	7508260	.	+	0	Parent=Os01t0235800-01
Chr01	irgsp1_rep	CDS	7509091	7509342	.	+	0	Parent=Os01t0235800-01
Chr01	irgsp1_rep	CDS	7509696	7509953	.	+	0	Parent=Os01t0235800-01
Chr01	irgsp1_rep	CDS	7510798	7510877	.	+	0	Parent=Os01t0235800-01
Chr01	irgsp1_rep	CDS	7510959	7511070	.	+	1	Parent=Os01t0235800-01
Chr01	irgsp1_rep	CDS	7511153	7511296	.	+	0	Parent=Os01t0235800-01
Chr01	irgsp1_rep	three_prime_UTR	7511297	7511672	.	+	.	Parent=Os01t0235800-01
Chr01	irgsp1_rep	mRNA	7517312	7518483	.	-	.	ID=Os01t0235850-00;Name=Os01t0235850-00;Locus_id=Os01g0235850;Note=Hypothetical protein.;Transcript_evidence=EU974948 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0235850-00
Chr01	irgsp1_rep	five_prime_UTR	7518213	7518483	.	-	.	Parent=Os01t0235850-00
Chr01	irgsp1_rep	CDS	7517705	7518212	.	-	0	Parent=Os01t0235850-00
Chr01	irgsp1_rep	CDS	7517553	7517611	.	-	2	Parent=Os01t0235850-00
Chr01	irgsp1_rep	three_prime_UTR	7517312	7517552	.	-	.	Parent=Os01t0235850-00
Chr01	irgsp1_rep	mRNA	7517314	7518489	.	+	.	ID=Os01t0235900-00;Name=Os01t0235900-00;Locus_id=Os01g0235900;Oryzabase Gene Symbol Synonym(s)=OsGRL1;Oryzabase Gene Name Synonym(s)=GRX-like protein 1%2C glutaredoxin-like protein 1;Note=Thioredoxin fold domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001042526.1 (RefSeq);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin (IPR002109),Thioredoxin-like fold (IPR012336);Oryzabase=13591;TENOR=Os01t0235900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	7517314	7518489	.	+	0	Parent=Os01t0235900-00
Chr01	irgsp1_rep	mRNA	7519617	7524433	.	+	.	ID=Os01t0236000-01;Name=Os01t0236000-01;Locus_id=Os01g0236000;Note=Conserved hypothetical protein.;Transcript_evidence=AK065569 (DDBJ%2C Best hit);ORF_evidence=B8AB33 (UniProt);NIAS_FLcDNA=J013026L08;Expression=AK065569;TENOR=Os01t0236000-01;KEGG=Os01t0236000-01
Chr01	irgsp1_rep	five_prime_UTR	7519617	7519783	.	+	.	Parent=Os01t0236000-01
Chr01	irgsp1_rep	CDS	7519784	7520392	.	+	0	Parent=Os01t0236000-01
Chr01	irgsp1_rep	three_prime_UTR	7520393	7520404	.	+	.	Parent=Os01t0236000-01
Chr01	irgsp1_rep	three_prime_UTR	7524006	7524433	.	+	.	Parent=Os01t0236000-01
Chr01	irgsp1_rep	mRNA	7547017	7551842	.	+	.	ID=Os01t0236300-01;Name=Os01t0236300-01;Locus_id=Os01g0236300;CGSNL Gene Symbol=ARF16;CGSNL Gene Name=AUXIN RESPONSE FACTOR 16;Oryzabase Gene Symbol Synonym(s)=OsARF16%2C OsARF2%2C OsARF1;Oryzabase Gene Name Synonym(s)=auxin response factor-16%2C auxin response factor 16%2C auxin response factor-2%2C auxin response factor 2%2C auxin response factor-1%2C auxin response factor 1;Note=Similar to Auxin response factor 18.;Transcript_evidence=AK102521 (DDBJ%2C Best hit);ORF_evidence=C6F1M3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: response to hormone stimulus (GO:0009725),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Transcriptional factor B3 (IPR003340),Auxin response factor (IPR010525),Aux/IAA-ARF-dimerisation (IPR011525),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=J033095P08;Oryzabase=10003;Expression=AK102521;TENOR=Os01t0236300-01;KEGG=Os01t0236300-01
Chr01	irgsp1_rep	five_prime_UTR	7547017	7547080	.	+	.	Parent=Os01t0236300-01
Chr01	irgsp1_rep	CDS	7547081	7547093	.	+	0	Parent=Os01t0236300-01
Chr01	irgsp1_rep	CDS	7547194	7547321	.	+	2	Parent=Os01t0236300-01
Chr01	irgsp1_rep	CDS	7547439	7547537	.	+	0	Parent=Os01t0236300-01
Chr01	irgsp1_rep	CDS	7547650	7547706	.	+	0	Parent=Os01t0236300-01
Chr01	irgsp1_rep	CDS	7548106	7548261	.	+	0	Parent=Os01t0236300-01
Chr01	irgsp1_rep	CDS	7548350	7548434	.	+	0	Parent=Os01t0236300-01
Chr01	irgsp1_rep	CDS	7548572	7548662	.	+	2	Parent=Os01t0236300-01
Chr01	irgsp1_rep	CDS	7548776	7548940	.	+	1	Parent=Os01t0236300-01
Chr01	irgsp1_rep	CDS	7549025	7549144	.	+	1	Parent=Os01t0236300-01
Chr01	irgsp1_rep	CDS	7549243	7549315	.	+	1	Parent=Os01t0236300-01
Chr01	irgsp1_rep	CDS	7549397	7549562	.	+	0	Parent=Os01t0236300-01
Chr01	irgsp1_rep	CDS	7549647	7550290	.	+	2	Parent=Os01t0236300-01
Chr01	irgsp1_rep	CDS	7551080	7551258	.	+	0	Parent=Os01t0236300-01
Chr01	irgsp1_rep	CDS	7551346	7551469	.	+	1	Parent=Os01t0236300-01
Chr01	irgsp1_rep	three_prime_UTR	7551470	7551842	.	+	.	Parent=Os01t0236300-01
Chr01	irgsp1_rep	mRNA	7547049	7551856	.	+	.	ID=Os01t0236300-02;Name=Os01t0236300-02;Locus_id=Os01g0236300;CGSNL Gene Symbol=ARF16;CGSNL Gene Name=AUXIN RESPONSE FACTOR 16;Oryzabase Gene Symbol Synonym(s)=OsARF16%2C OsARF2%2C OsARF1;Oryzabase Gene Name Synonym(s)=auxin response factor-16%2C auxin response factor 16%2C auxin response factor-2%2C auxin response factor 2%2C auxin response factor-1%2C auxin response factor 1;Note=Similar to Auxin response factor 18.;Transcript_evidence=AK064007 (DDBJ%2C Best hit);ORF_evidence=C6F1M3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: response to hormone stimulus (GO:0009725),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Transcriptional factor B3 (IPR003340),Auxin response factor (IPR010525),Aux/IAA-ARF-dimerisation (IPR011525),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=001-124-G08;Oryzabase=10003;Expression=AK064007;TENOR=Os01t0236300-02;KEGG=Os01t0236300-02
Chr01	irgsp1_rep	five_prime_UTR	7547049	7547080	.	+	.	Parent=Os01t0236300-02
Chr01	irgsp1_rep	CDS	7547081	7547093	.	+	0	Parent=Os01t0236300-02
Chr01	irgsp1_rep	CDS	7547194	7547321	.	+	2	Parent=Os01t0236300-02
Chr01	irgsp1_rep	CDS	7547439	7547537	.	+	0	Parent=Os01t0236300-02
Chr01	irgsp1_rep	CDS	7547650	7547706	.	+	0	Parent=Os01t0236300-02
Chr01	irgsp1_rep	CDS	7548106	7548261	.	+	0	Parent=Os01t0236300-02
Chr01	irgsp1_rep	CDS	7548350	7548434	.	+	0	Parent=Os01t0236300-02
Chr01	irgsp1_rep	CDS	7548572	7548662	.	+	2	Parent=Os01t0236300-02
Chr01	irgsp1_rep	CDS	7548776	7548940	.	+	1	Parent=Os01t0236300-02
Chr01	irgsp1_rep	CDS	7549025	7549144	.	+	1	Parent=Os01t0236300-02
Chr01	irgsp1_rep	CDS	7549243	7549315	.	+	1	Parent=Os01t0236300-02
Chr01	irgsp1_rep	CDS	7549397	7549562	.	+	0	Parent=Os01t0236300-02
Chr01	irgsp1_rep	CDS	7549647	7550290	.	+	2	Parent=Os01t0236300-02
Chr01	irgsp1_rep	CDS	7551080	7551258	.	+	0	Parent=Os01t0236300-02
Chr01	irgsp1_rep	CDS	7551346	7551469	.	+	1	Parent=Os01t0236300-02
Chr01	irgsp1_rep	three_prime_UTR	7551470	7551856	.	+	.	Parent=Os01t0236300-02
Chr01	irgsp1_rep	mRNA	7557338	7560496	.	+	.	ID=Os01t0236400-01;Name=Os01t0236400-01;Locus_id=Os01g0236400;Note=Similar to protein ABIL1.;Transcript_evidence=AK064408 (DDBJ%2C Best hit);ORF_evidence=NP_001148582.1 (RefSeq);NIAS_FLcDNA=002-110-A02;Expression=AK064408;TENOR=Os01t0236400-01;KEGG=Os01t0236400-01
Chr01	irgsp1_rep	five_prime_UTR	7557338	7557723	.	+	.	Parent=Os01t0236400-01
Chr01	irgsp1_rep	CDS	7557724	7557846	.	+	0	Parent=Os01t0236400-01
Chr01	irgsp1_rep	CDS	7558708	7558790	.	+	0	Parent=Os01t0236400-01
Chr01	irgsp1_rep	CDS	7558887	7559037	.	+	1	Parent=Os01t0236400-01
Chr01	irgsp1_rep	CDS	7559233	7559330	.	+	0	Parent=Os01t0236400-01
Chr01	irgsp1_rep	CDS	7559413	7559510	.	+	1	Parent=Os01t0236400-01
Chr01	irgsp1_rep	CDS	7559584	7559617	.	+	2	Parent=Os01t0236400-01
Chr01	irgsp1_rep	CDS	7559751	7559870	.	+	1	Parent=Os01t0236400-01
Chr01	irgsp1_rep	CDS	7559993	7560086	.	+	1	Parent=Os01t0236400-01
Chr01	irgsp1_rep	CDS	7560242	7560394	.	+	0	Parent=Os01t0236400-01
Chr01	irgsp1_rep	three_prime_UTR	7560395	7560496	.	+	.	Parent=Os01t0236400-01
Chr01	irgsp1_rep	mRNA	7571236	7576792	.	+	.	ID=Os01t0236700-01;Name=Os01t0236700-01;Locus_id=Os01g0236700;CGSNL Gene Symbol=NLP3;CGSNL Gene Name=NIN-LIKE PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsNLP3;Oryzabase Gene Name Synonym(s)=OsNIN-like3%2C OsNIN-like 3%2C NIN-like3%2C NIN-like 3%2C NLP transcription factor 3%2C NODULE INCEPTION-like protein 3;Note=Octicosapeptide/Phox/Bem1p domain containing protein.;Transcript_evidence=AK067319 (DDBJ%2C Best hit);ORF_evidence=Q5NB82 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Phox/Bem1p (IPR000270),Plant regulator RWP-RK (IPR003035);NIAS_FLcDNA=J013106K21;Oryzabase=21542;Expression=AK067319;TENOR=Os01t0236700-01;KEGG=Os01t0236700-01
Chr01	irgsp1_rep	five_prime_UTR	7571236	7571489	.	+	.	Parent=Os01t0236700-01
Chr01	irgsp1_rep	CDS	7571490	7571796	.	+	0	Parent=Os01t0236700-01
Chr01	irgsp1_rep	CDS	7572984	7573540	.	+	2	Parent=Os01t0236700-01
Chr01	irgsp1_rep	CDS	7573702	7573749	.	+	0	Parent=Os01t0236700-01
Chr01	irgsp1_rep	CDS	7573841	7574789	.	+	0	Parent=Os01t0236700-01
Chr01	irgsp1_rep	CDS	7575573	7576528	.	+	2	Parent=Os01t0236700-01
Chr01	irgsp1_rep	three_prime_UTR	7576529	7576792	.	+	.	Parent=Os01t0236700-01
Chr01	irgsp1_rep	mRNA	7575974	7576732	.	+	.	ID=Os01t0236700-02;Name=Os01t0236700-02;Locus_id=Os01g0236700;CGSNL Gene Symbol=NLP3;CGSNL Gene Name=NIN-LIKE PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsNLP3;Oryzabase Gene Name Synonym(s)=OsNIN-like3%2C OsNIN-like 3%2C NIN-like3%2C NIN-like 3%2C NLP transcription factor 3%2C NODULE INCEPTION-like protein 3;Note=Hypothetical conserved gene.;Transcript_evidence=AK061701 (DDBJ%2C Best hit);ORF_evidence=Q5NB82 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Phox/Bem1p (IPR000270);NIAS_FLcDNA=001-037-E01;Oryzabase=21542;Expression=AK061701;TENOR=Os01t0236700-02;KEGG=Os01t0236700-02
Chr01	irgsp1_rep	CDS	7575974	7576528	.	+	0	Parent=Os01t0236700-02
Chr01	irgsp1_rep	three_prime_UTR	7576529	7576732	.	+	.	Parent=Os01t0236700-02
Chr01	irgsp1_rep	mRNA	7578100	7582923	.	-	.	ID=Os01t0236800-01;Name=Os01t0236800-01;Locus_id=Os01g0236800;Oryzabase Gene Symbol Synonym(s)=OsBamy4%2C Bamy4;Oryzabase Gene Name Synonym(s)=beta-amylase 4;Note=Similar to predicted protein.;Transcript_evidence=AK287868 (DDBJ%2C Best hit);ORF_evidence=B9RWS7 (UniProt);GO=Biological Process: polysaccharide catabolic process (GO:0000272),Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: beta-amylase activity (GO:0016161),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 14 (IPR001554),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J065202D17;Oryzabase=21706;TENOR=Os01t0236800-01;KEGG=Os01t0236800-01
Chr01	irgsp1_rep	five_prime_UTR	7582879	7582923	.	-	.	Parent=Os01t0236800-01
Chr01	irgsp1_rep	CDS	7582292	7582878	.	-	0	Parent=Os01t0236800-01
Chr01	irgsp1_rep	CDS	7579711	7579921	.	-	1	Parent=Os01t0236800-01
Chr01	irgsp1_rep	CDS	7579506	7579622	.	-	0	Parent=Os01t0236800-01
Chr01	irgsp1_rep	CDS	7578207	7578992	.	-	0	Parent=Os01t0236800-01
Chr01	irgsp1_rep	three_prime_UTR	7578100	7578206	.	-	.	Parent=Os01t0236800-01
Chr01	irgsp1_rep	mRNA	7579824	7582828	.	+	.	ID=Os01t0236900-00;Name=Os01t0236900-00;Locus_id=Os01g0236900;Note=Hypothetical protein.;Transcript_evidence=AK357470 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0236900-00
Chr01	irgsp1_rep	five_prime_UTR	7579824	7579950	.	+	.	Parent=Os01t0236900-00
Chr01	irgsp1_rep	CDS	7579951	7580004	.	+	0	Parent=Os01t0236900-00
Chr01	irgsp1_rep	CDS	7582299	7582828	.	+	0	Parent=Os01t0236900-00
Chr01	irgsp1_rep	mRNA	7588191	7589529	.	+	.	ID=Os01t0237000-01;Name=Os01t0237000-01;Locus_id=Os01g0237000;Note=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup domain containing protein.;Transcript_evidence=AK062426 (DDBJ%2C Best hit);ORF_evidence=A2WMK7 (UniProt);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup (IPR006459),Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);NIAS_FLcDNA=001-102-H04;Expression=AK062426;TENOR=Os01t0237000-01;KEGG=Os01t0237000-01
Chr01	irgsp1_rep	five_prime_UTR	7588191	7588368	.	+	.	Parent=Os01t0237000-01
Chr01	irgsp1_rep	CDS	7588369	7588529	.	+	0	Parent=Os01t0237000-01
Chr01	irgsp1_rep	CDS	7588857	7589184	.	+	1	Parent=Os01t0237000-01
Chr01	irgsp1_rep	three_prime_UTR	7589185	7589529	.	+	.	Parent=Os01t0237000-01
Chr01	irgsp1_rep	mRNA	7590433	7592743	.	-	.	ID=Os01t0237100-01;Name=Os01t0237100-01;Locus_id=Os01g0237100;Note=Phosphoglycerate mutase domain containing protein.;Transcript_evidence=AK068739 (DDBJ%2C Best hit),AK060943 (DDBJ%2C Best hit);ORF_evidence=B8ABG3 (UniProt);InterPro=Histidine phosphatase superfamily%2C clade-1 (IPR013078);NIAS_FLcDNA=J013163L02,006-201-D10;Expression=AK068739;TENOR=Os01t0237100-01;KEGG=Os01t0237100-01
Chr01	irgsp1_rep	five_prime_UTR	7592715	7592743	.	-	.	Parent=Os01t0237100-01
Chr01	irgsp1_rep	CDS	7592585	7592714	.	-	0	Parent=Os01t0237100-01
Chr01	irgsp1_rep	CDS	7591910	7592124	.	-	2	Parent=Os01t0237100-01
Chr01	irgsp1_rep	CDS	7591524	7591643	.	-	0	Parent=Os01t0237100-01
Chr01	irgsp1_rep	CDS	7591339	7591438	.	-	0	Parent=Os01t0237100-01
Chr01	irgsp1_rep	CDS	7591113	7591252	.	-	2	Parent=Os01t0237100-01
Chr01	irgsp1_rep	CDS	7590951	7591031	.	-	0	Parent=Os01t0237100-01
Chr01	irgsp1_rep	CDS	7590659	7590784	.	-	0	Parent=Os01t0237100-01
Chr01	irgsp1_rep	three_prime_UTR	7590433	7590658	.	-	.	Parent=Os01t0237100-01
Chr01	irgsp1_rep	mRNA	7594516	7595607	.	-	.	ID=Os01t0237200-00;Name=Os01t0237200-00;Locus_id=Os01g0237200;Note=Conserved hypothetical protein.;Transcript_evidence=EU969470 (DDBJ);ORF_evidence=NP_001046462.1 (RefSeq);TENOR=Os01t0237200-00
Chr01	irgsp1_rep	five_prime_UTR	7595472	7595607	.	-	.	Parent=Os01t0237200-00
Chr01	irgsp1_rep	five_prime_UTR	7594702	7594743	.	-	.	Parent=Os01t0237200-00
Chr01	irgsp1_rep	CDS	7594516	7594701	.	-	0	Parent=Os01t0237200-00
Chr01	irgsp1_rep	mRNA	7605441	7606545	.	-	.	ID=Os01t0237366-00;Name=Os01t0237366-00;Locus_id=Os01g0237366;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001172250.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NmrA-like (IPR008030),NAD(P)-binding domain (IPR016040);TENOR=Os01t0237366-00;KEGG=Os01t0237366-00
Chr01	irgsp1_rep	CDS	7606351	7606545	.	-	0	Parent=Os01t0237366-00
Chr01	irgsp1_rep	CDS	7605866	7606012	.	-	0	Parent=Os01t0237366-00
Chr01	irgsp1_rep	CDS	7605441	7605614	.	-	0	Parent=Os01t0237366-00
Chr01	irgsp1_rep	mRNA	7615973	7617208	.	-	.	ID=Os01t0237400-00;Name=Os01t0237400-00;Locus_id=Os01g0237400;Note=Hypothetical conserved gene.;Transcript_evidence=EU969470 (DDBJ);ORF_evidence=B8ABG5 (UniProt);TENOR=Os01t0237400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	7616887	7617208	.	-	0	Parent=Os01t0237400-00
Chr01	irgsp1_rep	CDS	7616087	7616100	.	-	2	Parent=Os01t0237400-00
Chr01	irgsp1_rep	three_prime_UTR	7615973	7616086	.	-	.	Parent=Os01t0237400-00
Chr01	irgsp1_rep	mRNA	7619082	7620013	.	-	.	ID=Os01t0237500-01;Name=Os01t0237500-01;Locus_id=Os01g0237500;Note=NmrA-like family protein.;Transcript_evidence=AK110682 (DDBJ%2C Best hit);ORF_evidence=A2ZR42 (UniProt);NIAS_FLcDNA=002-169-H05;Expression=AK110682;TENOR=Os01t0237500-01;KEGG=Os01t0237500-01
Chr01	irgsp1_rep	five_prime_UTR	7620012	7620013	.	-	.	Parent=Os01t0237500-01
Chr01	irgsp1_rep	CDS	7619891	7620011	.	-	0	Parent=Os01t0237500-01
Chr01	irgsp1_rep	CDS	7619357	7619529	.	-	2	Parent=Os01t0237500-01
Chr01	irgsp1_rep	three_prime_UTR	7619082	7619356	.	-	.	Parent=Os01t0237500-01
Chr01	irgsp1_rep	mRNA	7624002	7624487	.	-	.	ID=Os01t0237750-00;Name=Os01t0237750-00;Locus_id=Os01g0237750;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B5L530 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NmrA-like (IPR008030),NAD(P)-binding domain (IPR016040);TENOR=Os01t0237750-00;KEGG=Os01t0237750-00
Chr01	irgsp1_rep	CDS	7624272	7624487	.	-	0	Parent=Os01t0237750-00
Chr01	irgsp1_rep	CDS	7624002	7624151	.	-	0	Parent=Os01t0237750-00
Chr01	irgsp1_rep	mRNA	7654059	7656516	.	-	.	ID=Os01t0238200-01;Name=Os01t0238200-01;Locus_id=Os01g0238200;Note=Conserved hypothetical protein.;Transcript_evidence=AK063106 (DDBJ%2C Best hit);ORF_evidence=A2WML0 (UniProt);NIAS_FLcDNA=001-111-D02;Expression=AK063106;TENOR=Os01t0238200-01;KEGG=Os01t0238200-01
Chr01	irgsp1_rep	five_prime_UTR	7656456	7656516	.	-	.	Parent=Os01t0238200-01
Chr01	irgsp1_rep	CDS	7656087	7656455	.	-	0	Parent=Os01t0238200-01
Chr01	irgsp1_rep	three_prime_UTR	7656050	7656086	.	-	.	Parent=Os01t0238200-01
Chr01	irgsp1_rep	three_prime_UTR	7654059	7654252	.	-	.	Parent=Os01t0238200-01
Chr01	irgsp1_rep	mRNA	7652967	7656516	.	-	.	ID=Os01t0238200-02;Name=Os01t0238200-02;Locus_id=Os01g0238200;Note=Conserved hypothetical protein.;Transcript_evidence=AK062403 (DDBJ%2C Best hit);ORF_evidence=A2WML0 (UniProt);NIAS_FLcDNA=001-102-E05;Expression=AK062403;TENOR=Os01t0238200-02;KEGG=Os01t0238200-02
Chr01	irgsp1_rep	five_prime_UTR	7656456	7656516	.	-	.	Parent=Os01t0238200-02
Chr01	irgsp1_rep	CDS	7656087	7656455	.	-	0	Parent=Os01t0238200-02
Chr01	irgsp1_rep	three_prime_UTR	7656050	7656086	.	-	.	Parent=Os01t0238200-02
Chr01	irgsp1_rep	three_prime_UTR	7652967	7653152	.	-	.	Parent=Os01t0238200-02
Chr01	irgsp1_rep	mRNA	7656089	7656431	.	+	.	ID=Os01t0238287-00;Name=Os01t0238287-00;Locus_id=Os01g0238287;Note=Hypothetical protein.;Transcript_evidence=EU942531 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0238287-00
Chr01	irgsp1_rep	five_prime_UTR	7656089	7656089	.	+	.	Parent=Os01t0238287-00
Chr01	irgsp1_rep	CDS	7656090	7656431	.	+	0	Parent=Os01t0238287-00
Chr01	irgsp1_rep	mRNA	7660812	7661458	.	+	.	ID=Os01t0238375-01;Name=Os01t0238375-01;Locus_id=Os01g0238375;Note=Hypothetical protein.;Transcript_evidence=AK062747 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-106-F10;Expression=AK062747;TENOR=Os01t0238375-01;KEGG=Os01t0238375-01
Chr01	irgsp1_rep	five_prime_UTR	7660812	7660833	.	+	.	Parent=Os01t0238375-01
Chr01	irgsp1_rep	CDS	7660834	7661193	.	+	0	Parent=Os01t0238375-01
Chr01	irgsp1_rep	three_prime_UTR	7661194	7661458	.	+	.	Parent=Os01t0238375-01
Chr01	irgsp1_rep	mRNA	7665423	7668089	.	+	.	ID=Os01t0238500-01;Name=Os01t0238500-01;Locus_id=Os01g0238500;Note=Similar to Branched-chain-amino-acid aminotransferase-like protein 3%2C chloroplast precursor.;Transcript_evidence=AK067076 (DDBJ%2C Best hit);ORF_evidence=NP_200593.2 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Aminotransferase%2C class IV (IPR001544);NIAS_FLcDNA=J013093D15;Expression=AK067076;TENOR=Os01t0238500-01;KEGG=Os01t0238500-01
Chr01	irgsp1_rep	five_prime_UTR	7665423	7665551	.	+	.	Parent=Os01t0238500-01
Chr01	irgsp1_rep	CDS	7665552	7665570	.	+	0	Parent=Os01t0238500-01
Chr01	irgsp1_rep	CDS	7665696	7665733	.	+	2	Parent=Os01t0238500-01
Chr01	irgsp1_rep	CDS	7666661	7667510	.	+	0	Parent=Os01t0238500-01
Chr01	irgsp1_rep	CDS	7667608	7667699	.	+	2	Parent=Os01t0238500-01
Chr01	irgsp1_rep	three_prime_UTR	7667700	7668089	.	+	.	Parent=Os01t0238500-01
Chr01	irgsp1_rep	mRNA	7665477	7668076	.	+	.	ID=Os01t0238500-02;Name=Os01t0238500-02;Locus_id=Os01g0238500;Note=Similar to Branched-chain-amino-acid aminotransferase-like protein 3%2C chloroplast precursor.;Transcript_evidence=AK104302 (DDBJ%2C Best hit);ORF_evidence=NP_200593.2 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Aminotransferase%2C class IV (IPR001544);NIAS_FLcDNA=001-011-C03;Expression=AK104302;TENOR=Os01t0238500-02;KEGG=Os01t0238500-02
Chr01	irgsp1_rep	five_prime_UTR	7665477	7665551	.	+	.	Parent=Os01t0238500-02
Chr01	irgsp1_rep	CDS	7665552	7665570	.	+	0	Parent=Os01t0238500-02
Chr01	irgsp1_rep	CDS	7665696	7665733	.	+	2	Parent=Os01t0238500-02
Chr01	irgsp1_rep	CDS	7666661	7667510	.	+	0	Parent=Os01t0238500-02
Chr01	irgsp1_rep	CDS	7667608	7667699	.	+	2	Parent=Os01t0238500-02
Chr01	irgsp1_rep	three_prime_UTR	7667700	7668076	.	+	.	Parent=Os01t0238500-02
Chr01	irgsp1_rep	mRNA	7670071	7672734	.	+	.	ID=Os01t0238600-01;Name=Os01t0238600-01;Locus_id=Os01g0238600;Note=Nucleic acid-binding%2C OB-fold domain containing protein.;Transcript_evidence=AK073776 (DDBJ%2C Best hit);ORF_evidence=B4FR03 (UniProt);InterPro=Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=J033067D04;Expression=AK073776;TENOR=Os01t0238600-01;KEGG=Os01t0238600-01
Chr01	irgsp1_rep	five_prime_UTR	7670071	7670208	.	+	.	Parent=Os01t0238600-01
Chr01	irgsp1_rep	CDS	7670209	7670446	.	+	0	Parent=Os01t0238600-01
Chr01	irgsp1_rep	CDS	7672259	7672446	.	+	2	Parent=Os01t0238600-01
Chr01	irgsp1_rep	three_prime_UTR	7672447	7672734	.	+	.	Parent=Os01t0238600-01
Chr01	irgsp1_rep	mRNA	7673033	7676401	.	+	.	ID=Os01t0238700-01;Name=Os01t0238700-01;Locus_id=Os01g0238700;CGSNL Gene Symbol=YSL1;CGSNL Gene Name=YELLOW STRIP-LIKE GENE 1;Oryzabase Gene Symbol Synonym(s)=OsYSL1%2C OsYs1;Oryzabase Gene Name Synonym(s)=rice YSL (yellow stripe-like) gene 1%2C Probable metal-nicotianamine transporter YSL1%2C Protein YELLOW STRIPE LIKE 1%2C yellow stripe 1-like transporter 1;Note=Oligopeptide transporter OPT superfamily protein.;Transcript_evidence=AK121040 (DDBJ%2C Best hit);ORF_evidence=A2ZR47 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085);InterPro=Oligopeptide transporter OPT superfamily (IPR004813);NIAS_FLcDNA=J023051H23;Oryzabase=8350;Expression=AK121040;TENOR=Os01t0238700-01;KEGG=Os01t0238700-01
Chr01	irgsp1_rep	five_prime_UTR	7673033	7673047	.	+	.	Parent=Os01t0238700-01
Chr01	irgsp1_rep	CDS	7673048	7673390	.	+	0	Parent=Os01t0238700-01
Chr01	irgsp1_rep	CDS	7673546	7673709	.	+	2	Parent=Os01t0238700-01
Chr01	irgsp1_rep	CDS	7673864	7673961	.	+	0	Parent=Os01t0238700-01
Chr01	irgsp1_rep	CDS	7674040	7674361	.	+	1	Parent=Os01t0238700-01
Chr01	irgsp1_rep	CDS	7675021	7676220	.	+	0	Parent=Os01t0238700-01
Chr01	irgsp1_rep	three_prime_UTR	7676221	7676401	.	+	.	Parent=Os01t0238700-01
Chr01	irgsp1_rep	mRNA	7677217	7678862	.	-	.	ID=Os01t0238800-01;Name=Os01t0238800-01;Locus_id=Os01g0238800;Note=Hypothetical conserved gene.;Transcript_evidence=AK063492 (DDBJ%2C Best hit);ORF_evidence=NP_565478.1 (RefSeq);NIAS_FLcDNA=001-116-C11;Expression=AK063492;TENOR=Os01t0238800-01;KEGG=Os01t0238800-01
Chr01	irgsp1_rep	five_prime_UTR	7678845	7678862	.	-	.	Parent=Os01t0238800-01
Chr01	irgsp1_rep	CDS	7678702	7678844	.	-	0	Parent=Os01t0238800-01
Chr01	irgsp1_rep	CDS	7678494	7678615	.	-	1	Parent=Os01t0238800-01
Chr01	irgsp1_rep	CDS	7677511	7677533	.	-	2	Parent=Os01t0238800-01
Chr01	irgsp1_rep	three_prime_UTR	7677217	7677510	.	-	.	Parent=Os01t0238800-01
Chr01	irgsp1_rep	mRNA	7677180	7678845	.	-	.	ID=Os01t0238800-02;Name=Os01t0238800-02;Locus_id=Os01g0238800;Note=Similar to NFD6 (NUCLEAR FUSION DEFECTIVE 6).;Transcript_evidence=AK062940 (DDBJ%2C Best hit);ORF_evidence=NP_565478.1 (RefSeq);NIAS_FLcDNA=001-109-B07;Expression=AK062940;TENOR=Os01t0238800-02;KEGG=Os01t0238800-02
Chr01	irgsp1_rep	five_prime_UTR	7678845	7678845	.	-	.	Parent=Os01t0238800-02
Chr01	irgsp1_rep	CDS	7678702	7678844	.	-	0	Parent=Os01t0238800-02
Chr01	irgsp1_rep	CDS	7678494	7678615	.	-	1	Parent=Os01t0238800-02
Chr01	irgsp1_rep	CDS	7677470	7677489	.	-	2	Parent=Os01t0238800-02
Chr01	irgsp1_rep	three_prime_UTR	7677180	7677469	.	-	.	Parent=Os01t0238800-02
Chr01	irgsp1_rep	mRNA	7677950	7678911	.	+	.	ID=Os01t0238850-00;Name=Os01t0238850-00;Locus_id=Os01g0238850;Note=Hypothetical gene.;Transcript_evidence=EU964662 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0238850-00;KEGG=Os01t0238850-00
Chr01	irgsp1_rep	five_prime_UTR	7677950	7678159	.	+	.	Parent=Os01t0238850-00
Chr01	irgsp1_rep	five_prime_UTR	7678429	7678467	.	+	.	Parent=Os01t0238850-00
Chr01	irgsp1_rep	CDS	7678468	7678911	.	+	0	Parent=Os01t0238850-00
Chr01	irgsp1_rep	mRNA	7679009	7685849	.	+	.	ID=Os01t0238900-01;Name=Os01t0238900-01;Locus_id=Os01g0238900;Oryzabase Gene Symbol Synonym(s)=OsWD40-11;Note=Similar to Protein SOF1.;Transcript_evidence=AK111838 (DDBJ%2C Best hit);ORF_evidence=B6TTU7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J023136A09;Oryzabase=10692;TENOR=Os01t0238900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	7679009	7679210	.	+	.	Parent=Os01t0238900-01
Chr01	irgsp1_rep	CDS	7679211	7679276	.	+	0	Parent=Os01t0238900-01
Chr01	irgsp1_rep	CDS	7679974	7680063	.	+	0	Parent=Os01t0238900-01
Chr01	irgsp1_rep	CDS	7680144	7680255	.	+	0	Parent=Os01t0238900-01
Chr01	irgsp1_rep	CDS	7680959	7680986	.	+	2	Parent=Os01t0238900-01
Chr01	irgsp1_rep	CDS	7681163	7681261	.	+	1	Parent=Os01t0238900-01
Chr01	irgsp1_rep	CDS	7681614	7681683	.	+	1	Parent=Os01t0238900-01
Chr01	irgsp1_rep	CDS	7681765	7681799	.	+	0	Parent=Os01t0238900-01
Chr01	irgsp1_rep	CDS	7681895	7681969	.	+	1	Parent=Os01t0238900-01
Chr01	irgsp1_rep	CDS	7682054	7682149	.	+	1	Parent=Os01t0238900-01
Chr01	irgsp1_rep	CDS	7682376	7682439	.	+	1	Parent=Os01t0238900-01
Chr01	irgsp1_rep	CDS	7683044	7683142	.	+	0	Parent=Os01t0238900-01
Chr01	irgsp1_rep	three_prime_UTR	7683143	7683358	.	+	.	Parent=Os01t0238900-01
Chr01	irgsp1_rep	three_prime_UTR	7683800	7683860	.	+	.	Parent=Os01t0238900-01
Chr01	irgsp1_rep	three_prime_UTR	7683956	7684020	.	+	.	Parent=Os01t0238900-01
Chr01	irgsp1_rep	three_prime_UTR	7684255	7684360	.	+	.	Parent=Os01t0238900-01
Chr01	irgsp1_rep	three_prime_UTR	7685142	7685230	.	+	.	Parent=Os01t0238900-01
Chr01	irgsp1_rep	three_prime_UTR	7685353	7685849	.	+	.	Parent=Os01t0238900-01
Chr01	irgsp1_rep	mRNA	7692648	7693984	.	-	.	ID=Os01t0239000-01;Name=Os01t0239000-01;Locus_id=Os01g0239000;Note=Hypothetical conserved gene.;Transcript_evidence=AK109503 (DDBJ%2C Best hit);ORF_evidence=Q5NAN5-2 (UniProt);NIAS_FLcDNA=001-208-A09;Expression=AK109503;TENOR=Os01t0239000-01;KEGG=Os01t0239000-01
Chr01	irgsp1_rep	five_prime_UTR	7693422	7693984	.	-	.	Parent=Os01t0239000-01
Chr01	irgsp1_rep	CDS	7692741	7693421	.	-	0	Parent=Os01t0239000-01
Chr01	irgsp1_rep	three_prime_UTR	7692648	7692740	.	-	.	Parent=Os01t0239000-01
Chr01	irgsp1_rep	mRNA	7686901	7693781	.	-	.	ID=Os01t0239000-02;Name=Os01t0239000-02;Locus_id=Os01g0239000;Note=Similar to Phosphate starvation regulator protein (Regulatory protein of P- starvation acclimation response Psr1).;Transcript_evidence=AK121019 (DDBJ%2C Best hit);ORF_evidence=B6SVM7 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J023049D13;Expression=AK121019;TENOR=Os01t0239000-02;KEGG=Os01t0239000-02
Chr01	irgsp1_rep	five_prime_UTR	7693422	7693781	.	-	.	Parent=Os01t0239000-02
Chr01	irgsp1_rep	CDS	7692771	7693421	.	-	0	Parent=Os01t0239000-02
Chr01	irgsp1_rep	CDS	7691648	7691788	.	-	0	Parent=Os01t0239000-02
Chr01	irgsp1_rep	CDS	7689011	7689469	.	-	0	Parent=Os01t0239000-02
Chr01	irgsp1_rep	CDS	7688754	7688831	.	-	0	Parent=Os01t0239000-02
Chr01	irgsp1_rep	CDS	7688117	7688245	.	-	0	Parent=Os01t0239000-02
Chr01	irgsp1_rep	CDS	7687297	7687458	.	-	0	Parent=Os01t0239000-02
Chr01	irgsp1_rep	three_prime_UTR	7686901	7687296	.	-	.	Parent=Os01t0239000-02
Chr01	irgsp1_rep	mRNA	7712339	7717634	.	+	.	ID=Os01t0239100-01;Name=Os01t0239100-01;Locus_id=Os01g0239100;Oryzabase Gene Symbol Synonym(s)=OsDjB1;Oryzabase Gene Name Synonym(s)=DnaJ domain protein B1;Note=Heat shock protein DnaJ family protein.;Transcript_evidence=AK288072 (DDBJ%2C Best hit);ORF_evidence=NP_001149102.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Chaperone DnaJ%2C C-terminal (IPR002939),Heat shock protein DnaJ (IPR003095),HSP40/DnaJ peptide-binding (IPR008971),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=J075161I05;Oryzabase=12150;TENOR=Os01t0239100-01;KEGG=Os01t0239100-01
Chr01	irgsp1_rep	five_prime_UTR	7712339	7712633	.	+	.	Parent=Os01t0239100-01
Chr01	irgsp1_rep	CDS	7712634	7712801	.	+	0	Parent=Os01t0239100-01
Chr01	irgsp1_rep	CDS	7713741	7714183	.	+	0	Parent=Os01t0239100-01
Chr01	irgsp1_rep	CDS	7716813	7717251	.	+	1	Parent=Os01t0239100-01
Chr01	irgsp1_rep	three_prime_UTR	7717252	7717634	.	+	.	Parent=Os01t0239100-01
Chr01	irgsp1_rep	mRNA	7712349	7721253	.	+	.	ID=Os01t0239100-02;Name=Os01t0239100-02;Locus_id=Os01g0239100;Oryzabase Gene Symbol Synonym(s)=OsDjB1;Oryzabase Gene Name Synonym(s)=DnaJ domain protein B1;Note=Heat shock protein DnaJ family protein.;Transcript_evidence=AK288959 (DDBJ%2C Best hit);ORF_evidence=NP_001149102.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Chaperone DnaJ%2C C-terminal (IPR002939),Heat shock protein DnaJ (IPR003095),HSP40/DnaJ peptide-binding (IPR008971),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=J090084E19;Oryzabase=12150;TENOR=Os01t0239100-02;KEGG=Os01t0239100-02
Chr01	irgsp1_rep	five_prime_UTR	7712349	7712633	.	+	.	Parent=Os01t0239100-02
Chr01	irgsp1_rep	CDS	7712634	7712801	.	+	0	Parent=Os01t0239100-02
Chr01	irgsp1_rep	CDS	7713741	7714183	.	+	0	Parent=Os01t0239100-02
Chr01	irgsp1_rep	CDS	7716813	7717251	.	+	1	Parent=Os01t0239100-02
Chr01	irgsp1_rep	three_prime_UTR	7717252	7720772	.	+	.	Parent=Os01t0239100-02
Chr01	irgsp1_rep	three_prime_UTR	7720863	7721253	.	+	.	Parent=Os01t0239100-02
Chr01	irgsp1_rep	mRNA	7712627	7717022	.	-	.	ID=Os01t0239150-00;Name=Os01t0239150-00;Locus_id=Os01g0239150;Note=Hypothetical protein.;Transcript_evidence=tplb0026i01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0239150-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	7716824	7717022	.	-	.	Parent=Os01t0239150-00
Chr01	irgsp1_rep	five_prime_UTR	7713864	7714189	.	-	.	Parent=Os01t0239150-00
Chr01	irgsp1_rep	CDS	7713734	7713863	.	-	0	Parent=Os01t0239150-00
Chr01	irgsp1_rep	CDS	7712627	7712794	.	-	2	Parent=Os01t0239150-00
Chr01	irgsp1_rep	mRNA	7718270	7722217	.	-	.	ID=Os01t0239200-01;Name=Os01t0239200-01;Locus_id=Os01g0239200;CGSNL Gene Symbol=TPT1;CGSNL Gene Name=TRIOSE PHOSPHATE/PHOSPHATE TRANSLOCATOR 1;Oryzabase Gene Symbol Synonym(s)=OsTPT1%2C TPT%2C tpt;Oryzabase Gene Name Synonym(s)=triose phosphate/phosphate translocator%2C triose phosphate/phosphate translocator 1;Note=Similar to Phophate translocator (Fragment).;Transcript_evidence=AK099799 (DDBJ%2C Best hit);ORF_evidence=Q9FTT3 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215);InterPro=Tpt phosphate/phosphoenolpyruvate translocator (IPR004696),Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=J013097M22;Oryzabase=8719;Expression=AK099799;TENOR=Os01t0239200-01;KEGG=Os01t0239200-01
Chr01	irgsp1_rep	five_prime_UTR	7722189	7722217	.	-	.	Parent=Os01t0239200-01
Chr01	irgsp1_rep	CDS	7721890	7722188	.	-	0	Parent=Os01t0239200-01
Chr01	irgsp1_rep	CDS	7721373	7721441	.	-	1	Parent=Os01t0239200-01
Chr01	irgsp1_rep	CDS	7721184	7721249	.	-	1	Parent=Os01t0239200-01
Chr01	irgsp1_rep	CDS	7720980	7721058	.	-	1	Parent=Os01t0239200-01
Chr01	irgsp1_rep	CDS	7720637	7720757	.	-	0	Parent=Os01t0239200-01
Chr01	irgsp1_rep	CDS	7720451	7720546	.	-	2	Parent=Os01t0239200-01
Chr01	irgsp1_rep	CDS	7720113	7720225	.	-	2	Parent=Os01t0239200-01
Chr01	irgsp1_rep	CDS	7719913	7719990	.	-	0	Parent=Os01t0239200-01
Chr01	irgsp1_rep	CDS	7719706	7719822	.	-	0	Parent=Os01t0239200-01
Chr01	irgsp1_rep	CDS	7719449	7719548	.	-	0	Parent=Os01t0239200-01
Chr01	irgsp1_rep	CDS	7719227	7719327	.	-	2	Parent=Os01t0239200-01
Chr01	irgsp1_rep	CDS	7718589	7718603	.	-	0	Parent=Os01t0239200-01
Chr01	irgsp1_rep	three_prime_UTR	7718270	7718588	.	-	.	Parent=Os01t0239200-01
Chr01	irgsp1_rep	mRNA	7724314	7725532	.	+	.	ID=Os01t0239300-01;Name=Os01t0239300-01;Locus_id=Os01g0239300;Note=Conserved hypothetical protein.;Transcript_evidence=AK068349 (DDBJ%2C Best hit);ORF_evidence=B8ABD9 (UniProt);NIAS_FLcDNA=J013136B15;TENOR=Os01t0239300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	7724314	7724423	.	+	.	Parent=Os01t0239300-01
Chr01	irgsp1_rep	CDS	7724424	7725044	.	+	0	Parent=Os01t0239300-01
Chr01	irgsp1_rep	three_prime_UTR	7725045	7725532	.	+	.	Parent=Os01t0239300-01
Chr01	irgsp1_rep	mRNA	7739074	7742756	.	+	.	ID=Os01t0239700-01;Name=Os01t0239700-01;Locus_id=Os01g0239700;Note=Similar to Leucine-rich receptor-like protein kinase.;Transcript_evidence=AK122130 (DDBJ%2C Best hit);ORF_evidence=A4L9R2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033133B05;Oryzabase=19675;Expression=AK122130;TENOR=Os01t0239700-01;KEGG=Os01t0239700-01
Chr01	irgsp1_rep	five_prime_UTR	7739074	7739231	.	+	.	Parent=Os01t0239700-01
Chr01	irgsp1_rep	CDS	7739232	7741848	.	+	0	Parent=Os01t0239700-01
Chr01	irgsp1_rep	CDS	7741929	7742320	.	+	2	Parent=Os01t0239700-01
Chr01	irgsp1_rep	three_prime_UTR	7742321	7742756	.	+	.	Parent=Os01t0239700-01
Chr01	irgsp1_rep	mRNA	7739130	7742878	.	+	.	ID=Os01t0239700-02;Name=Os01t0239700-02;Locus_id=Os01g0239700;Note=Similar to Leucine-rich receptor-like protein kinase.;Transcript_evidence=AK067723 (DDBJ%2C Best hit);ORF_evidence=NP_174166.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013116J03;Oryzabase=19675;Expression=AK067723;TENOR=Os01t0239700-02;KEGG=Os01t0239700-02
Chr01	irgsp1_rep	five_prime_UTR	7739130	7739231	.	+	.	Parent=Os01t0239700-02
Chr01	irgsp1_rep	CDS	7739232	7741848	.	+	0	Parent=Os01t0239700-02
Chr01	irgsp1_rep	CDS	7741929	7742320	.	+	2	Parent=Os01t0239700-02
Chr01	irgsp1_rep	three_prime_UTR	7742321	7742878	.	+	.	Parent=Os01t0239700-02
Chr01	irgsp1_rep	mRNA	7741174	7742872	.	+	.	ID=Os01t0239700-03;Name=Os01t0239700-03;Locus_id=Os01g0239700;Note=Similar to predicted protein.;Transcript_evidence=AK070058 (DDBJ%2C Best hit);ORF_evidence=C6ZRV2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023041N23;Oryzabase=19675;Expression=AK070058;TENOR=Os01t0239700-03;KEGG=Os01t0239700-03
Chr01	irgsp1_rep	five_prime_UTR	7741174	7741175	.	+	.	Parent=Os01t0239700-03
Chr01	irgsp1_rep	CDS	7741176	7741848	.	+	0	Parent=Os01t0239700-03
Chr01	irgsp1_rep	CDS	7741929	7742320	.	+	2	Parent=Os01t0239700-03
Chr01	irgsp1_rep	three_prime_UTR	7742321	7742872	.	+	.	Parent=Os01t0239700-03
Chr01	irgsp1_rep	mRNA	7771395	7774272	.	+	.	ID=Os01t0240600-01;Name=Os01t0240600-01;Locus_id=Os01g0240600;Note=Hypothetical conserved gene.;Transcript_evidence=AK288965 (DDBJ%2C Best hit);ORF_evidence=A2WMN5 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=J090084K01;TENOR=Os01t0240600-01;KEGG=Os01t0240600-01
Chr01	irgsp1_rep	five_prime_UTR	7771395	7771959	.	+	.	Parent=Os01t0240600-01
Chr01	irgsp1_rep	CDS	7771960	7772823	.	+	0	Parent=Os01t0240600-01
Chr01	irgsp1_rep	three_prime_UTR	7772824	7774272	.	+	.	Parent=Os01t0240600-01
Chr01	irgsp1_rep	mRNA	7776045	7778090	.	+	.	ID=Os01t0240700-00;Name=Os01t0240700-00;Locus_id=Os01g0240700;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9EUL8 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);TENOR=Os01t0240700-00;KEGG=Os01t0240700-00
Chr01	irgsp1_rep	CDS	7776045	7777188	.	+	0	Parent=Os01t0240700-00
Chr01	irgsp1_rep	CDS	7777999	7778090	.	+	2	Parent=Os01t0240700-00
Chr01	irgsp1_rep	mRNA	7776076	7776733	.	-	.	ID=Os01t0240725-00;Name=Os01t0240725-00;Locus_id=Os01g0240725;Note=Hypothetical protein.;Transcript_evidence=AK376036 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0240725-00
Chr01	irgsp1_rep	five_prime_UTR	7776732	7776733	.	-	.	Parent=Os01t0240725-00
Chr01	irgsp1_rep	CDS	7776076	7776731	.	-	0	Parent=Os01t0240725-00
Chr01	irgsp1_rep	mRNA	7804166	7805788	.	+	.	ID=Os01t0241000-01;Name=Os01t0241000-01;Locus_id=Os01g0241000;Note=Conserved hypothetical protein.;Transcript_evidence=AK119763 (DDBJ%2C Best hit);ORF_evidence=A2WMN9 (UniProt);NIAS_FLcDNA=002-171-G09;Expression=AK119763;TENOR=Os01t0241000-01;KEGG=Os01t0241000-01
Chr01	irgsp1_rep	five_prime_UTR	7804166	7804280	.	+	.	Parent=Os01t0241000-01
Chr01	irgsp1_rep	CDS	7804281	7804910	.	+	0	Parent=Os01t0241000-01
Chr01	irgsp1_rep	CDS	7804989	7805510	.	+	0	Parent=Os01t0241000-01
Chr01	irgsp1_rep	three_prime_UTR	7805511	7805788	.	+	.	Parent=Os01t0241000-01
Chr01	irgsp1_rep	mRNA	7806682	7810887	.	-	.	ID=Os01t0241100-01;Name=Os01t0241100-01;Locus_id=Os01g0241100;Note=Conserved hypothetical protein.;Transcript_evidence=AK242754 (DDBJ%2C Best hit);ORF_evidence=A2WMP0 (UniProt);NIAS_FLcDNA=J090050L06;TENOR=Os01t0241100-01;KEGG=Os01t0241100-01
Chr01	irgsp1_rep	five_prime_UTR	7810859	7810887	.	-	.	Parent=Os01t0241100-01
Chr01	irgsp1_rep	CDS	7810788	7810858	.	-	0	Parent=Os01t0241100-01
Chr01	irgsp1_rep	CDS	7810113	7810296	.	-	1	Parent=Os01t0241100-01
Chr01	irgsp1_rep	CDS	7809966	7810028	.	-	0	Parent=Os01t0241100-01
Chr01	irgsp1_rep	CDS	7809763	7809865	.	-	0	Parent=Os01t0241100-01
Chr01	irgsp1_rep	CDS	7809494	7809598	.	-	2	Parent=Os01t0241100-01
Chr01	irgsp1_rep	CDS	7809338	7809411	.	-	2	Parent=Os01t0241100-01
Chr01	irgsp1_rep	CDS	7809135	7809261	.	-	0	Parent=Os01t0241100-01
Chr01	irgsp1_rep	CDS	7808884	7808947	.	-	2	Parent=Os01t0241100-01
Chr01	irgsp1_rep	CDS	7808065	7808256	.	-	1	Parent=Os01t0241100-01
Chr01	irgsp1_rep	CDS	7807589	7807709	.	-	1	Parent=Os01t0241100-01
Chr01	irgsp1_rep	CDS	7807275	7807499	.	-	0	Parent=Os01t0241100-01
Chr01	irgsp1_rep	CDS	7807113	7807193	.	-	0	Parent=Os01t0241100-01
Chr01	irgsp1_rep	three_prime_UTR	7806682	7807112	.	-	.	Parent=Os01t0241100-01
Chr01	irgsp1_rep	mRNA	7817704	7818394	.	+	.	ID=Os01t0241400-01;Name=Os01t0241400-01;Locus_id=Os01g0241400;RAP-DB Gene Symbol Synonym(s)=PHS9;RAP-DB Gene Name Synonym(s)=pre-harvest sprouting 9;CGSNL Gene Symbol=PHS9;CGSNL Gene Name=PRE-HARVEST SPROUTING 9;Oryzabase Gene Symbol Synonym(s)=OsGRX3%2C GRX3;Oryzabase Gene Name Synonym(s)=glutaredoxin 3%2C Pre-harvest sprouting 9;Note=CC-type glutaredoxin%2C Regulation of pre-harvest sprouting;Transcript_evidence=AK107708;ORF_evidence=Q0JP62;GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron transfer activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Thioredoxin-like superfamily (IPR036249),Glutaredoxin-like%2C plant II (IPR011905),Glutaredoxin (IPR002109);NIAS_FLcDNA=002-132-D06;Manual Curation=September 26%2C 2019;Literature_PMID=31436865;Oryzabase=13565;Expression=AK107708;TENOR=Os01t0241400-01;KEGG=Os01t0241400-01;Subcellular location=cytoplasm (GO:0005737), nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	7817704	7817784	.	+	.	Parent=Os01t0241400-01
Chr01	irgsp1_rep	CDS	7817785	7818195	.	+	0	Parent=Os01t0241400-01
Chr01	irgsp1_rep	three_prime_UTR	7818196	7818394	.	+	.	Parent=Os01t0241400-01
Chr01	irgsp1_rep	mRNA	7847490	7849833	.	+	.	ID=Os01t0242200-01;Name=Os01t0242200-01;Locus_id=Os01g0242200;CGSNL Gene Symbol=IDD8;CGSNL Gene Name=INDETERMINATE DOMAIN 8;Oryzabase Gene Symbol Synonym(s)=OsIDD8;Oryzabase Gene Name Synonym(s)=indeterminate domain 8;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK107468 (DDBJ%2C Best hit);ORF_evidence=B9EUM1 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=002-129-B01;Oryzabase=13156;Expression=AK107468;TENOR=Os01t0242200-01;KEGG=Os01t0242200-01
Chr01	irgsp1_rep	five_prime_UTR	7847490	7847870	.	+	.	Parent=Os01t0242200-01
Chr01	irgsp1_rep	CDS	7847871	7847991	.	+	0	Parent=Os01t0242200-01
Chr01	irgsp1_rep	CDS	7848079	7848478	.	+	2	Parent=Os01t0242200-01
Chr01	irgsp1_rep	CDS	7848713	7848901	.	+	1	Parent=Os01t0242200-01
Chr01	irgsp1_rep	CDS	7849142	7849679	.	+	1	Parent=Os01t0242200-01
Chr01	irgsp1_rep	three_prime_UTR	7849680	7849833	.	+	.	Parent=Os01t0242200-01
Chr01	irgsp1_rep	mRNA	7852689	7855760	.	+	.	ID=Os01t0242300-01;Name=Os01t0242300-01;Locus_id=Os01g0242300;Note=Optic atrophy 3 family protein.;Transcript_evidence=AK070082 (DDBJ%2C Best hit);ORF_evidence=B9EUM2 (UniProt);InterPro=Optic atrophy 3-like (IPR010754);NIAS_FLcDNA=J023044E02;Expression=AK070082;TENOR=Os01t0242300-01;KEGG=Os01t0242300-01
Chr01	irgsp1_rep	five_prime_UTR	7852689	7852790	.	+	.	Parent=Os01t0242300-01
Chr01	irgsp1_rep	CDS	7852791	7852919	.	+	0	Parent=Os01t0242300-01
Chr01	irgsp1_rep	CDS	7853770	7853904	.	+	0	Parent=Os01t0242300-01
Chr01	irgsp1_rep	CDS	7854064	7854150	.	+	0	Parent=Os01t0242300-01
Chr01	irgsp1_rep	CDS	7855256	7855417	.	+	0	Parent=Os01t0242300-01
Chr01	irgsp1_rep	three_prime_UTR	7855418	7855760	.	+	.	Parent=Os01t0242300-01
Chr01	irgsp1_rep	mRNA	7852782	7854147	.	-	.	ID=Os01t0242333-00;Name=Os01t0242333-00;Locus_id=Os01g0242333;Note=Non-protein coding transcript.;Transcript_evidence=EU950761 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0242333-00
Chr01	irgsp1_rep	exon	7854044	7854147	.	-	.	Parent=Os01t0242333-00
Chr01	irgsp1_rep	exon	7853591	7853972	.	-	.	Parent=Os01t0242333-00
Chr01	irgsp1_rep	exon	7852782	7853064	.	-	.	Parent=Os01t0242333-00
Chr01	irgsp1_rep	mRNA	7856373	7857611	.	+	.	ID=Os01t0242400-01;Name=Os01t0242400-01;Locus_id=Os01g0242400;Note=Lateral organ boundaries%2C LOB domain containing protein.;Transcript_evidence=AK108724 (DDBJ%2C Best hit);ORF_evidence=NP_001159074.1 (RefSeq);InterPro=Lateral organ boundaries%2C LOB (IPR004883);NIAS_FLcDNA=002-150-C08;Expression=AK108724;TENOR=Os01t0242400-01;KEGG=Os01t0242400-01
Chr01	irgsp1_rep	five_prime_UTR	7856373	7856490	.	+	.	Parent=Os01t0242400-01
Chr01	irgsp1_rep	CDS	7856491	7857240	.	+	0	Parent=Os01t0242400-01
Chr01	irgsp1_rep	three_prime_UTR	7857241	7857611	.	+	.	Parent=Os01t0242400-01
Chr01	irgsp1_rep	mRNA	7856518	7857344	.	-	.	ID=Os01t0242450-00;Name=Os01t0242450-00;Locus_id=Os01g0242450;Note=Non-protein coding transcript.;Transcript_evidence=BT085512 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0242450-00
Chr01	irgsp1_rep	exon	7857022	7857344	.	-	.	Parent=Os01t0242450-00
Chr01	irgsp1_rep	exon	7856518	7856909	.	-	.	Parent=Os01t0242450-00
Chr01	irgsp1_rep	mRNA	7857828	7860061	.	-	.	ID=Os01t0242500-01;Name=Os01t0242500-01;Locus_id=Os01g0242500;Note=D-tyrosyl-tRNA(Tyr) deacylase family protein.;Transcript_evidence=AK073692 (DDBJ%2C Best hit);ORF_evidence=A2WMP8 (UniProt);GO=Biological Process: D-amino acid catabolic process (GO:0019478),Cellular Component: cytoplasm (GO:0005737),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=D-tyrosyl-tRNA(Tyr) deacylase (IPR003732),D-Tyr tRNAtyr deacylase-like domain (IPR023509);NIAS_FLcDNA=J033060B05;Expression=AK073692;TENOR=Os01t0242500-01;KEGG=Os01t0242500-01 (EC:3.1.-.-)
Chr01	irgsp1_rep	five_prime_UTR	7859913	7860061	.	-	.	Parent=Os01t0242500-01
Chr01	irgsp1_rep	CDS	7859871	7859912	.	-	0	Parent=Os01t0242500-01
Chr01	irgsp1_rep	CDS	7859685	7859776	.	-	0	Parent=Os01t0242500-01
Chr01	irgsp1_rep	CDS	7859251	7859317	.	-	1	Parent=Os01t0242500-01
Chr01	irgsp1_rep	CDS	7859097	7859127	.	-	0	Parent=Os01t0242500-01
Chr01	irgsp1_rep	CDS	7858851	7858991	.	-	2	Parent=Os01t0242500-01
Chr01	irgsp1_rep	CDS	7858400	7858425	.	-	2	Parent=Os01t0242500-01
Chr01	irgsp1_rep	CDS	7858246	7858319	.	-	0	Parent=Os01t0242500-01
Chr01	irgsp1_rep	CDS	7858108	7858168	.	-	1	Parent=Os01t0242500-01
Chr01	irgsp1_rep	three_prime_UTR	7857828	7858107	.	-	.	Parent=Os01t0242500-01
Chr01	irgsp1_rep	mRNA	7862065	7867775	.	-	.	ID=Os01t0242600-01;Name=Os01t0242600-01;Locus_id=Os01g0242600;CGSNL Gene Symbol=NTMC2T6.1;CGSNL Gene Name=N-TERMINAL-TM-C2 DOMAIN PROTEIN 6.1;Oryzabase Gene Symbol Synonym(s)=OsNTMC2T6.1;Oryzabase Gene Name Synonym(s)=N-terminal-TM-C2 domain protein 6.1%2C N-terminal trans- membrane and C2 domain protein 6.1%2C NTMC2 type 6.1 protein%2C NTMC2 family gene 6.1;Note=C2 calcium-dependent membrane targeting domain containing protein.;Transcript_evidence=AK067756 (DDBJ%2C Best hit);ORF_evidence=XP_002455073.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=J013116N03;Oryzabase=22130;Expression=AK067756;TENOR=Os01t0242600-01;KEGG=Os01t0242600-01
Chr01	irgsp1_rep	five_prime_UTR	7867588	7867775	.	-	.	Parent=Os01t0242600-01
Chr01	irgsp1_rep	CDS	7867462	7867587	.	-	0	Parent=Os01t0242600-01
Chr01	irgsp1_rep	CDS	7866631	7866705	.	-	0	Parent=Os01t0242600-01
Chr01	irgsp1_rep	CDS	7866331	7866471	.	-	0	Parent=Os01t0242600-01
Chr01	irgsp1_rep	CDS	7866074	7866169	.	-	0	Parent=Os01t0242600-01
Chr01	irgsp1_rep	CDS	7865857	7865988	.	-	0	Parent=Os01t0242600-01
Chr01	irgsp1_rep	CDS	7864684	7864836	.	-	0	Parent=Os01t0242600-01
Chr01	irgsp1_rep	CDS	7864555	7864596	.	-	0	Parent=Os01t0242600-01
Chr01	irgsp1_rep	CDS	7864428	7864476	.	-	0	Parent=Os01t0242600-01
Chr01	irgsp1_rep	CDS	7863975	7864070	.	-	2	Parent=Os01t0242600-01
Chr01	irgsp1_rep	CDS	7863718	7863901	.	-	2	Parent=Os01t0242600-01
Chr01	irgsp1_rep	CDS	7863378	7863498	.	-	1	Parent=Os01t0242600-01
Chr01	irgsp1_rep	CDS	7862310	7863119	.	-	0	Parent=Os01t0242600-01
Chr01	irgsp1_rep	three_prime_UTR	7862065	7862309	.	-	.	Parent=Os01t0242600-01
Chr01	irgsp1_rep	mRNA	7862088	7867709	.	-	.	ID=Os01t0242600-02;Name=Os01t0242600-02;Locus_id=Os01g0242600;CGSNL Gene Symbol=NTMC2T6.1;CGSNL Gene Name=N-TERMINAL-TM-C2 DOMAIN PROTEIN 6.1;Oryzabase Gene Symbol Synonym(s)=OsNTMC2T6.1;Oryzabase Gene Name Synonym(s)=N-terminal-TM-C2 domain protein 6.1%2C N-terminal trans- membrane and C2 domain protein 6.1%2C NTMC2 type 6.1 protein%2C NTMC2 family gene 6.1;Note=C2 calcium-dependent membrane targeting domain containing protein.;Transcript_evidence=AK098860 (DDBJ%2C Best hit);ORF_evidence=XP_002455073.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=J013000N23;Oryzabase=22130;Expression=AK098860;TENOR=Os01t0242600-02;KEGG=Os01t0242600-02
Chr01	irgsp1_rep	five_prime_UTR	7867588	7867709	.	-	.	Parent=Os01t0242600-02
Chr01	irgsp1_rep	CDS	7867462	7867587	.	-	0	Parent=Os01t0242600-02
Chr01	irgsp1_rep	CDS	7866631	7866705	.	-	0	Parent=Os01t0242600-02
Chr01	irgsp1_rep	CDS	7866331	7866471	.	-	0	Parent=Os01t0242600-02
Chr01	irgsp1_rep	CDS	7866074	7866169	.	-	0	Parent=Os01t0242600-02
Chr01	irgsp1_rep	CDS	7865857	7865988	.	-	0	Parent=Os01t0242600-02
Chr01	irgsp1_rep	CDS	7864684	7864836	.	-	0	Parent=Os01t0242600-02
Chr01	irgsp1_rep	CDS	7864555	7864596	.	-	0	Parent=Os01t0242600-02
Chr01	irgsp1_rep	CDS	7864428	7864476	.	-	0	Parent=Os01t0242600-02
Chr01	irgsp1_rep	CDS	7863975	7864070	.	-	2	Parent=Os01t0242600-02
Chr01	irgsp1_rep	CDS	7863718	7863901	.	-	2	Parent=Os01t0242600-02
Chr01	irgsp1_rep	CDS	7863378	7863498	.	-	1	Parent=Os01t0242600-02
Chr01	irgsp1_rep	CDS	7862310	7863119	.	-	0	Parent=Os01t0242600-02
Chr01	irgsp1_rep	three_prime_UTR	7862088	7862309	.	-	.	Parent=Os01t0242600-02
Chr01	irgsp1_rep	mRNA	7871885	7876344	.	-	.	ID=Os01t0242800-00;Name=Os01t0242800-00;Locus_id=Os01g0242800;Note=Hypothetical protein.;Transcript_evidence=EU953009 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0242800-00
Chr01	irgsp1_rep	five_prime_UTR	7876270	7876344	.	-	.	Parent=Os01t0242800-00
Chr01	irgsp1_rep	five_prime_UTR	7872150	7872263	.	-	.	Parent=Os01t0242800-00
Chr01	irgsp1_rep	CDS	7871885	7872149	.	-	0	Parent=Os01t0242800-00
Chr01	irgsp1_rep	mRNA	7876239	7878758	.	+	.	ID=Os01t0242900-01;Name=Os01t0242900-01;Locus_id=Os01g0242900;Note=Similar to 60S ribosomal protein L18A.;Transcript_evidence=AK071658 (DDBJ%2C Best hit);ORF_evidence=B6TQT0 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L18a (IPR021138);NIAS_FLcDNA=J023102N05;Expression=AK071658;TENOR=Os01t0242900-01;KEGG=Os01t0242900-01
Chr01	irgsp1_rep	five_prime_UTR	7876239	7876272	.	+	.	Parent=Os01t0242900-01
Chr01	irgsp1_rep	CDS	7876273	7876495	.	+	0	Parent=Os01t0242900-01
Chr01	irgsp1_rep	CDS	7877196	7877274	.	+	2	Parent=Os01t0242900-01
Chr01	irgsp1_rep	CDS	7877422	7877536	.	+	1	Parent=Os01t0242900-01
Chr01	irgsp1_rep	CDS	7878510	7878563	.	+	0	Parent=Os01t0242900-01
Chr01	irgsp1_rep	three_prime_UTR	7878564	7878758	.	+	.	Parent=Os01t0242900-01
Chr01	irgsp1_rep	mRNA	7876239	7878776	.	+	.	ID=Os01t0242900-02;Name=Os01t0242900-02;Locus_id=Os01g0242900;Note=Conserved hypothetical protein.;Transcript_evidence=AK066245 (DDBJ%2C Best hit);ORF_evidence=A2WMQ2 (UniProt);NIAS_FLcDNA=J013051L10;TENOR=Os01t0242900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	7876239	7877762	.	+	.	Parent=Os01t0242900-02
Chr01	irgsp1_rep	CDS	7877763	7878017	.	+	0	Parent=Os01t0242900-02
Chr01	irgsp1_rep	three_prime_UTR	7878018	7878776	.	+	.	Parent=Os01t0242900-02
Chr01	irgsp1_rep	mRNA	7880003	7882578	.	-	.	ID=Os01t0243000-01;Name=Os01t0243000-01;Locus_id=Os01g0243000;Note=Similar to triacylglycerol lipase.;Transcript_evidence=AK063344 (DDBJ%2C Best hit);ORF_evidence=NP_001149137.1 (RefSeq);NIAS_FLcDNA=001-114-B04;TENOR=Os01t0243000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	7882396	7882578	.	-	.	Parent=Os01t0243000-01
Chr01	irgsp1_rep	CDS	7882280	7882395	.	-	0	Parent=Os01t0243000-01
Chr01	irgsp1_rep	CDS	7880154	7881117	.	-	1	Parent=Os01t0243000-01
Chr01	irgsp1_rep	three_prime_UTR	7880003	7880153	.	-	.	Parent=Os01t0243000-01
Chr01	irgsp1_rep	mRNA	7891541	7894719	.	+	.	ID=Os01t0243100-01;Name=Os01t0243100-01;Locus_id=Os01g0243100;Note=Similar to Kinesin.;Transcript_evidence=AK064212 (DDBJ%2C Best hit);ORF_evidence=E6NU97 (UniProt);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752),Kinesin%2C motor region%2C conserved site (IPR019821);NIAS_FLcDNA=002-104-F01;Expression=AK064212;TENOR=Os01t0243100-01;KEGG=Os01t0243100-01
Chr01	irgsp1_rep	five_prime_UTR	7891541	7891542	.	+	.	Parent=Os01t0243100-01
Chr01	irgsp1_rep	CDS	7891543	7891697	.	+	0	Parent=Os01t0243100-01
Chr01	irgsp1_rep	CDS	7891798	7892048	.	+	1	Parent=Os01t0243100-01
Chr01	irgsp1_rep	CDS	7892235	7892398	.	+	2	Parent=Os01t0243100-01
Chr01	irgsp1_rep	CDS	7892689	7892979	.	+	0	Parent=Os01t0243100-01
Chr01	irgsp1_rep	CDS	7893067	7893377	.	+	0	Parent=Os01t0243100-01
Chr01	irgsp1_rep	CDS	7893477	7893655	.	+	1	Parent=Os01t0243100-01
Chr01	irgsp1_rep	CDS	7894231	7894301	.	+	2	Parent=Os01t0243100-01
Chr01	irgsp1_rep	three_prime_UTR	7894302	7894719	.	+	.	Parent=Os01t0243100-01
Chr01	irgsp1_rep	mRNA	7894965	7900550	.	-	.	ID=Os01t0243200-01;Name=Os01t0243200-01;Locus_id=Os01g0243200;Oryzabase Gene Symbol Synonym(s)=Os_F0797;Note=Similar to integral membrane transporter family protein.;Transcript_evidence=AK103210 (DDBJ%2C Best hit);ORF_evidence=NP_200297.2 (RefSeq);NIAS_FLcDNA=J033122L17;Oryzabase=17469;TENOR=Os01t0243200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	7900433	7900550	.	-	.	Parent=Os01t0243200-01
Chr01	irgsp1_rep	CDS	7900325	7900432	.	-	0	Parent=Os01t0243200-01
Chr01	irgsp1_rep	CDS	7899096	7899227	.	-	0	Parent=Os01t0243200-01
Chr01	irgsp1_rep	three_prime_UTR	7897877	7899095	.	-	.	Parent=Os01t0243200-01
Chr01	irgsp1_rep	three_prime_UTR	7897334	7897786	.	-	.	Parent=Os01t0243200-01
Chr01	irgsp1_rep	three_prime_UTR	7897049	7897246	.	-	.	Parent=Os01t0243200-01
Chr01	irgsp1_rep	three_prime_UTR	7896133	7896270	.	-	.	Parent=Os01t0243200-01
Chr01	irgsp1_rep	three_prime_UTR	7894965	7895515	.	-	.	Parent=Os01t0243200-01
Chr01	irgsp1_rep	mRNA	7894961	7898120	.	-	.	ID=Os01t0243200-02;Name=Os01t0243200-02;Locus_id=Os01g0243200;Oryzabase Gene Symbol Synonym(s)=Os_F0797;Note=Biopterin transport-related protein BT1 family protein.;Transcript_evidence=AK065805 (DDBJ%2C Best hit);ORF_evidence=NP_200297.2 (RefSeq);InterPro=Biopterin transport-related protein BT1 (IPR004324),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J013038D19;Oryzabase=17469;Expression=AK065805;TENOR=Os01t0243200-02;KEGG=Os01t0243200-02
Chr01	irgsp1_rep	five_prime_UTR	7898119	7898120	.	-	.	Parent=Os01t0243200-02
Chr01	irgsp1_rep	CDS	7897877	7898118	.	-	0	Parent=Os01t0243200-02
Chr01	irgsp1_rep	CDS	7897334	7897786	.	-	1	Parent=Os01t0243200-02
Chr01	irgsp1_rep	CDS	7897049	7897246	.	-	1	Parent=Os01t0243200-02
Chr01	irgsp1_rep	CDS	7896133	7896270	.	-	1	Parent=Os01t0243200-02
Chr01	irgsp1_rep	CDS	7895254	7895515	.	-	1	Parent=Os01t0243200-02
Chr01	irgsp1_rep	three_prime_UTR	7894961	7895253	.	-	.	Parent=Os01t0243200-02
Chr01	irgsp1_rep	mRNA	7900010	7900874	.	+	.	ID=Os01t0243300-01;Name=Os01t0243300-01;Locus_id=Os01g0243300;Note=Hypothetical protein.;Transcript_evidence=AK109301 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-188-D12;TENOR=Os01t0243300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	7900010	7900288	.	+	.	Parent=Os01t0243300-01
Chr01	irgsp1_rep	CDS	7900289	7900522	.	+	0	Parent=Os01t0243300-01
Chr01	irgsp1_rep	three_prime_UTR	7900523	7900874	.	+	.	Parent=Os01t0243300-01
Chr01	irgsp1_rep	mRNA	7903316	7903956	.	-	.	ID=Os01t0243400-01;Name=Os01t0243400-01;Locus_id=Os01g0243400;Oryzabase Gene Symbol Synonym(s)=OsbHLH182%2C bHLH182;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 182;Note=Hypothetical conserved gene.;Transcript_evidence=AK070651 (DDBJ%2C Best hit);ORF_evidence=A2ZR73 (UniProt);NIAS_FLcDNA=J023061O11;Oryzabase=22853;Expression=AK070651;TENOR=Os01t0243400-01;KEGG=Os01t0243400-01
Chr01	irgsp1_rep	CDS	7903813	7903956	.	-	0	Parent=Os01t0243400-01
Chr01	irgsp1_rep	three_prime_UTR	7903316	7903812	.	-	.	Parent=Os01t0243400-01
Chr01	irgsp1_rep	mRNA	7903637	7904872	.	+	.	ID=Os01t0243450-00;Name=Os01t0243450-00;Locus_id=Os01g0243450;Note=Non-protein coding transcript.;Transcript_evidence=FP095602 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0243450-00
Chr01	irgsp1_rep	exon	7903637	7904872	.	+	.	Parent=Os01t0243450-00
Chr01	irgsp1_rep	mRNA	7926858	7927564	.	-	.	ID=Os01t0243600-00;Name=Os01t0243600-00;Locus_id=Os01g0243600;Note=Conserved hypothetical protein.;Transcript_evidence=EU974727 (DDBJ);ORF_evidence=NP_001042565.1 (RefSeq);TENOR=Os01t0243600-00;KEGG=Os01t0243600-00
Chr01	irgsp1_rep	five_prime_UTR	7927560	7927564	.	-	.	Parent=Os01t0243600-00
Chr01	irgsp1_rep	CDS	7926858	7927559	.	-	0	Parent=Os01t0243600-00
Chr01	irgsp1_rep	mRNA	7928156	7929762	.	-	.	ID=Os01t0243700-01;Name=Os01t0243700-01;Locus_id=Os01g0243700;Note=Similar to Beta-1%2C3-glucanase-like protein.;Transcript_evidence=AK102517 (DDBJ%2C Best hit);ORF_evidence=B6T324 (UniProt);InterPro=X8 (IPR012946);NIAS_FLcDNA=J033095M12;Expression=AK102517;TENOR=Os01t0243700-01;KEGG=Os01t0243700-01
Chr01	irgsp1_rep	five_prime_UTR	7929694	7929762	.	-	.	Parent=Os01t0243700-01
Chr01	irgsp1_rep	CDS	7929618	7929693	.	-	0	Parent=Os01t0243700-01
Chr01	irgsp1_rep	CDS	7929205	7929233	.	-	2	Parent=Os01t0243700-01
Chr01	irgsp1_rep	CDS	7928529	7928763	.	-	0	Parent=Os01t0243700-01
Chr01	irgsp1_rep	CDS	7928412	7928437	.	-	2	Parent=Os01t0243700-01
Chr01	irgsp1_rep	three_prime_UTR	7928156	7928411	.	-	.	Parent=Os01t0243700-01
Chr01	irgsp1_rep	mRNA	7928090	7929712	.	-	.	ID=Os01t0243700-02;Name=Os01t0243700-02;Locus_id=Os01g0243700;Note=Similar to Beta-1%2C3-glucanase-like protein.;Transcript_evidence=AK059681 (DDBJ%2C Best hit);ORF_evidence=B6T324 (UniProt);InterPro=X8 (IPR012946);NIAS_FLcDNA=001-031-H08;Expression=AK059681;TENOR=Os01t0243700-02;KEGG=Os01t0243700-02
Chr01	irgsp1_rep	five_prime_UTR	7929694	7929712	.	-	.	Parent=Os01t0243700-02
Chr01	irgsp1_rep	CDS	7929618	7929693	.	-	0	Parent=Os01t0243700-02
Chr01	irgsp1_rep	CDS	7929205	7929233	.	-	2	Parent=Os01t0243700-02
Chr01	irgsp1_rep	CDS	7928529	7928763	.	-	0	Parent=Os01t0243700-02
Chr01	irgsp1_rep	CDS	7928412	7928437	.	-	2	Parent=Os01t0243700-02
Chr01	irgsp1_rep	three_prime_UTR	7928090	7928411	.	-	.	Parent=Os01t0243700-02
Chr01	irgsp1_rep	mRNA	7932090	7933689	.	-	.	ID=Os01t0243800-01;Name=Os01t0243800-01;Locus_id=Os01g0243800;Note=Hypothetical conserved gene.;Transcript_evidence=AK109562 (DDBJ%2C Best hit);ORF_evidence=B8AZR6 (UniProt);NIAS_FLcDNA=002-128-B06;Expression=AK109562;TENOR=Os01t0243800-01;KEGG=Os01t0243800-01
Chr01	irgsp1_rep	five_prime_UTR	7932480	7933689	.	-	.	Parent=Os01t0243800-01
Chr01	irgsp1_rep	CDS	7932348	7932479	.	-	0	Parent=Os01t0243800-01
Chr01	irgsp1_rep	three_prime_UTR	7932090	7932347	.	-	.	Parent=Os01t0243800-01
Chr01	irgsp1_rep	mRNA	7942924	7943837	.	+	.	ID=Os01t0243901-00;Name=Os01t0243901-00;Locus_id=Os01g0243901;Note=Hypothetical protein.;Transcript_evidence=AK376036 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0243901-00
Chr01	irgsp1_rep	five_prime_UTR	7942924	7943353	.	+	.	Parent=Os01t0243901-00
Chr01	irgsp1_rep	CDS	7943354	7943803	.	+	0	Parent=Os01t0243901-00
Chr01	irgsp1_rep	three_prime_UTR	7943804	7943837	.	+	.	Parent=Os01t0243901-00
Chr01	irgsp1_rep	mRNA	7945561	7946955	.	-	.	ID=Os01t0244000-00;Name=Os01t0244000-00;Locus_id=Os01g0244000;Note=Domain of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK373668 (DDBJ);ORF_evidence=NP_001042569.2 (RefSeq);InterPro=Domain of unknown function DUF1618 (IPR011676);TENOR=Os01t0244000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	7945561	7946955	.	-	0	Parent=Os01t0244000-00
Chr01	irgsp1_rep	mRNA	7969745	7970752	.	-	.	ID=Os01t0244150-00;Name=Os01t0244150-00;Locus_id=Os01g0244150;Note=Similar to J075123K08%2C full insert sequence.;Transcript_evidence=AK374764 (DDBJ);ORF_evidence=B7F983 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);TENOR=Os01t0244150-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	7970615	7970752	.	-	.	Parent=Os01t0244150-00
Chr01	irgsp1_rep	CDS	7969745	7970614	.	-	0	Parent=Os01t0244150-00
Chr01	irgsp1_rep	mRNA	7971864	7974941	.	-	.	ID=Os01t0244400-01;Name=Os01t0244400-01;Locus_id=Os01g0244400;Note=Protein of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK242054 (DDBJ%2C Best hit);ORF_evidence=NP_001172253.1 (RefSeq);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=J075123K08;TENOR=Os01t0244400-01;KEGG=Os01t0244400-01
Chr01	irgsp1_rep	five_prime_UTR	7974941	7974941	.	-	.	Parent=Os01t0244400-01
Chr01	irgsp1_rep	CDS	7973653	7974940	.	-	0	Parent=Os01t0244400-01
Chr01	irgsp1_rep	CDS	7972623	7972684	.	-	2	Parent=Os01t0244400-01
Chr01	irgsp1_rep	three_prime_UTR	7972613	7972622	.	-	.	Parent=Os01t0244400-01
Chr01	irgsp1_rep	three_prime_UTR	7971864	7972133	.	-	.	Parent=Os01t0244400-01
Chr01	irgsp1_rep	mRNA	8002631	8003176	.	-	.	ID=Os01t0244966-00;Name=Os01t0244966-00;Locus_id=Os01g0244966;Note=Non-protein coding transcript.;Transcript_evidence=AK111127 (DDBJ%2C Secondary hit);ORF_evidence=NONE;TENOR=Os01t0244966-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	exon	8002631	8003176	.	-	.	Parent=Os01t0244966-00
Chr01	irgsp1_rep	mRNA	8004164	8005216	.	-	.	ID=Os01t0245000-00;Name=Os01t0245000-00;Locus_id=Os01g0245000;Note=Conserved hypothetical protein.;Transcript_evidence=AK372630 (DDBJ);ORF_evidence=Q5NA94 (UniProt);TENOR=Os01t0245000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	8004743	8005216	.	-	0	Parent=Os01t0245000-00
Chr01	irgsp1_rep	CDS	8004403	8004681	.	-	0	Parent=Os01t0245000-00
Chr01	irgsp1_rep	three_prime_UTR	8004164	8004402	.	-	.	Parent=Os01t0245000-00
Chr01	irgsp1_rep	mRNA	8023787	8025021	.	-	.	ID=Os01t0245532-00;Name=Os01t0245532-00;Locus_id=Os01g0245532;Note=Similar to J075123K08%2C full insert sequence.;Transcript_evidence=BT064575 (DDBJ);ORF_evidence=B7F983 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);TENOR=Os01t0245532-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	8024936	8025021	.	-	.	Parent=Os01t0245532-00
Chr01	irgsp1_rep	CDS	8023787	8024935	.	-	0	Parent=Os01t0245532-00
Chr01	irgsp1_rep	mRNA	8030884	8031842	.	+	.	ID=Os01t0245600-00;Name=Os01t0245600-00;Locus_id=Os01g0245600;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001042571.2 (RefSeq);TENOR=Os01t0245600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	8030884	8031676	.	+	0	Parent=Os01t0245600-00
Chr01	irgsp1_rep	CDS	8031781	8031842	.	+	2	Parent=Os01t0245600-00
Chr01	irgsp1_rep	mRNA	8033763	8035082	.	-	.	ID=Os01t0245700-00;Name=Os01t0245700-00;Locus_id=Os01g0245700;Note=Domain of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK373668 (DDBJ);ORF_evidence=NP_001172254.1 (RefSeq);InterPro=Domain of unknown function DUF1618 (IPR011676);TENOR=Os01t0245700-00
Chr01	irgsp1_rep	CDS	8033763	8035082	.	-	0	Parent=Os01t0245700-00
Chr01	irgsp1_rep	mRNA	8038422	8039750	.	-	.	ID=Os01t0245901-00;Name=Os01t0245901-00;Locus_id=Os01g0245901;Note=Domain of unknown function DUF1618 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q9XHZ1 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);TENOR=Os01t0245901-00
Chr01	irgsp1_rep	CDS	8038422	8039750	.	-	0	Parent=Os01t0245901-00
Chr01	irgsp1_rep	mRNA	8047388	8055598	.	-	.	ID=Os01t0246100-01;Name=Os01t0246100-01;Locus_id=Os01g0246100;CGSNL Gene Symbol=HAC701;CGSNL Gene Name=HISTONE ACETYLTRANSFERASE HAC701;Oryzabase Gene Symbol Synonym(s)=OsHAC701%2C OsKIX_1%2C OsHAC5;Oryzabase Gene Name Synonym(s)=Histone acetyltransferase HAC701%2C KIX domain protein 1;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK120732 (DDBJ%2C Best hit);ORF_evidence=Q9XHY7 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: transcription cofactor activity (GO:0003712),Molecular Function: histone acetyltransferase activity (GO:0004402),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C TAZ-type (IPR000197),Zinc finger%2C ZZ-type (IPR000433),Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Histone H3-K56 acetyltransferase%2C RTT109 (IPR013178),Zinc finger%2C PHD-type%2C conserved site (IPR019786);NIAS_FLcDNA=J023003C08;Oryzabase=11167;Expression=AK120732;TENOR=Os01t0246100-01;KEGG=Os01t0246100-01 (EC:2.3.1.48)
Chr01	irgsp1_rep	five_prime_UTR	8055475	8055598	.	-	.	Parent=Os01t0246100-01
Chr01	irgsp1_rep	five_prime_UTR	8054789	8054801	.	-	.	Parent=Os01t0246100-01
Chr01	irgsp1_rep	CDS	8054622	8054788	.	-	0	Parent=Os01t0246100-01
Chr01	irgsp1_rep	CDS	8054205	8054313	.	-	1	Parent=Os01t0246100-01
Chr01	irgsp1_rep	CDS	8053718	8053937	.	-	0	Parent=Os01t0246100-01
Chr01	irgsp1_rep	CDS	8053452	8053634	.	-	2	Parent=Os01t0246100-01
Chr01	irgsp1_rep	CDS	8052364	8053364	.	-	2	Parent=Os01t0246100-01
Chr01	irgsp1_rep	CDS	8051823	8052098	.	-	0	Parent=Os01t0246100-01
Chr01	irgsp1_rep	CDS	8051463	8051738	.	-	0	Parent=Os01t0246100-01
Chr01	irgsp1_rep	CDS	8050626	8050754	.	-	0	Parent=Os01t0246100-01
Chr01	irgsp1_rep	CDS	8050308	8050508	.	-	0	Parent=Os01t0246100-01
Chr01	irgsp1_rep	CDS	8050063	8050205	.	-	0	Parent=Os01t0246100-01
Chr01	irgsp1_rep	CDS	8049698	8049983	.	-	1	Parent=Os01t0246100-01
Chr01	irgsp1_rep	CDS	8049455	8049594	.	-	0	Parent=Os01t0246100-01
Chr01	irgsp1_rep	CDS	8049099	8049177	.	-	1	Parent=Os01t0246100-01
Chr01	irgsp1_rep	CDS	8048670	8049014	.	-	0	Parent=Os01t0246100-01
Chr01	irgsp1_rep	CDS	8047995	8048212	.	-	0	Parent=Os01t0246100-01
Chr01	irgsp1_rep	CDS	8047819	8047876	.	-	1	Parent=Os01t0246100-01
Chr01	irgsp1_rep	three_prime_UTR	8047388	8047818	.	-	.	Parent=Os01t0246100-01
Chr01	irgsp1_rep	mRNA	8057414	8062717	.	-	.	ID=Os01t0246200-00;Name=Os01t0246200-00;Locus_id=Os01g0246200;Note=Similar to TCP-domain protein.;Transcript_evidence=BT068348 (DDBJ);ORF_evidence=NP_001151775.1 (RefSeq);TENOR=Os01t0246200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	8062261	8062717	.	-	0	Parent=Os01t0246200-00
Chr01	irgsp1_rep	CDS	8057723	8058009	.	-	2	Parent=Os01t0246200-00
Chr01	irgsp1_rep	three_prime_UTR	8057414	8057722	.	-	.	Parent=Os01t0246200-00
Chr01	irgsp1_rep	mRNA	8061858	8062892	.	+	.	ID=Os01t0246400-01;Name=Os01t0246400-01;Locus_id=Os01g0246400;CGSNL Gene Symbol=ELIP;CGSNL Gene Name=EARLY LIGHT INDUCIBLE PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsELIP;Oryzabase Gene Name Synonym(s)=early light-induced protein;Note=Similar to Low molecular mass early light-inducible protein HV90%2C chloroplast precursor (ELIP).;Transcript_evidence=AK062972 (DDBJ%2C Best hit);ORF_evidence=NP_001152927.1 (RefSeq);InterPro=Chlorophyll A-B binding protein (IPR022796),Chlorophyll a/b binding protein domain (IPR023329);NIAS_FLcDNA=001-109-E06;Oryzabase=9033;Expression=AK062972;TENOR=Os01t0246400-01;KEGG=Os01t0246400-01
Chr01	irgsp1_rep	five_prime_UTR	8061858	8062006	.	+	.	Parent=Os01t0246400-01
Chr01	irgsp1_rep	CDS	8062007	8062150	.	+	0	Parent=Os01t0246400-01
Chr01	irgsp1_rep	CDS	8062244	8062708	.	+	0	Parent=Os01t0246400-01
Chr01	irgsp1_rep	three_prime_UTR	8062709	8062892	.	+	.	Parent=Os01t0246400-01
Chr01	irgsp1_rep	mRNA	8064860	8069013	.	-	.	ID=Os01t0246500-01;Name=Os01t0246500-01;Locus_id=Os01g0246500;Note=Similar to Minus dominance protein.;Transcript_evidence=AK058984 (DDBJ%2C Best hit);ORF_evidence=B4FNC6 (UniProt);InterPro=Plant regulator RWP-RK (IPR003035);NIAS_FLcDNA=001-020-E04;Expression=AK058984;TENOR=Os01t0246500-01;KEGG=Os01t0246500-01
Chr01	irgsp1_rep	five_prime_UTR	8068890	8069013	.	-	.	Parent=Os01t0246500-01
Chr01	irgsp1_rep	CDS	8068679	8068889	.	-	0	Parent=Os01t0246500-01
Chr01	irgsp1_rep	CDS	8068485	8068552	.	-	2	Parent=Os01t0246500-01
Chr01	irgsp1_rep	CDS	8066926	8067047	.	-	0	Parent=Os01t0246500-01
Chr01	irgsp1_rep	CDS	8065032	8065578	.	-	1	Parent=Os01t0246500-01
Chr01	irgsp1_rep	three_prime_UTR	8064860	8065031	.	-	.	Parent=Os01t0246500-01
Chr01	irgsp1_rep	mRNA	8071122	8071808	.	-	.	ID=Os01t0246601-00;Name=Os01t0246601-00;Locus_id=Os01g0246601;Note=Protein of unknown function DUF296 domain containing protein.;Transcript_evidence=BT064989 (DDBJ);ORF_evidence=NP_001150963.1 (RefSeq);InterPro=Domain of unknown function DUF296 (IPR005175);TENOR=Os01t0246601-00;KEGG=Os01t0246601-00
Chr01	irgsp1_rep	CDS	8071122	8071808	.	-	0	Parent=Os01t0246601-00
Chr01	irgsp1_rep	mRNA	8084184	8086980	.	+	.	ID=Os01t0246700-01;Name=Os01t0246700-01;Locus_id=Os01g0246700;CGSNL Gene Symbol=WRKY1;CGSNL Gene Name=WRKY GENE1;Oryzabase Gene Symbol Synonym(s)=OsWRKY1%2C OsWRKY1v2;Oryzabase Gene Name Synonym(s)=Rice WRKY gene1;Note=Similar to WRKY transcription factor 1.;Transcript_evidence=AK105509 (DDBJ%2C Best hit);ORF_evidence=Q6IET0 (UniProt);NIAS_FLcDNA=001-127-E04;Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6520;Expression=AK105509;TENOR=Os01t0246700-01;KEGG=Os01t0246700-01
Chr01	irgsp1_rep	five_prime_UTR	8084184	8084248	.	+	.	Parent=Os01t0246700-01
Chr01	irgsp1_rep	CDS	8084249	8084560	.	+	0	Parent=Os01t0246700-01
Chr01	irgsp1_rep	CDS	8084654	8084758	.	+	0	Parent=Os01t0246700-01
Chr01	irgsp1_rep	CDS	8084970	8085149	.	+	0	Parent=Os01t0246700-01
Chr01	irgsp1_rep	CDS	8085261	8085432	.	+	0	Parent=Os01t0246700-01
Chr01	irgsp1_rep	CDS	8086210	8086682	.	+	2	Parent=Os01t0246700-01
Chr01	irgsp1_rep	three_prime_UTR	8086683	8086980	.	+	.	Parent=Os01t0246700-01
Chr01	irgsp1_rep	mRNA	8125672	8128014	.	-	.	ID=Os01t0247500-01;Name=Os01t0247500-01;Locus_id=Os01g0247500;CGSNL Gene Symbol=RLCK27;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 27;Oryzabase Gene Symbol Synonym(s)=OsRLCK27;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 27;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK065614 (DDBJ%2C Best hit);ORF_evidence=NP_177974.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013026J11;Oryzabase=18746;Expression=AK065614;TENOR=Os01t0247500-01;KEGG=Os01t0247500-01
Chr01	irgsp1_rep	five_prime_UTR	8127740	8128014	.	-	.	Parent=Os01t0247500-01
Chr01	irgsp1_rep	CDS	8127607	8127739	.	-	0	Parent=Os01t0247500-01
Chr01	irgsp1_rep	CDS	8127175	8127513	.	-	2	Parent=Os01t0247500-01
Chr01	irgsp1_rep	CDS	8126842	8127096	.	-	2	Parent=Os01t0247500-01
Chr01	irgsp1_rep	CDS	8126610	8126743	.	-	2	Parent=Os01t0247500-01
Chr01	irgsp1_rep	CDS	8125929	8126120	.	-	0	Parent=Os01t0247500-01
Chr01	irgsp1_rep	three_prime_UTR	8125672	8125928	.	-	.	Parent=Os01t0247500-01
Chr01	irgsp1_rep	mRNA	8126659	8127416	.	+	.	ID=Os01t0247550-00;Name=Os01t0247550-00;Locus_id=Os01g0247550;Note=Hypothetical protein.;Transcript_evidence=EU969960 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0247550-00
Chr01	irgsp1_rep	five_prime_UTR	8126659	8126715	.	+	.	Parent=Os01t0247550-00
Chr01	irgsp1_rep	five_prime_UTR	8126812	8126903	.	+	.	Parent=Os01t0247550-00
Chr01	irgsp1_rep	CDS	8126904	8127083	.	+	0	Parent=Os01t0247550-00
Chr01	irgsp1_rep	CDS	8127146	8127385	.	+	0	Parent=Os01t0247550-00
Chr01	irgsp1_rep	three_prime_UTR	8127386	8127416	.	+	.	Parent=Os01t0247550-00
Chr01	irgsp1_rep	mRNA	8130258	8130932	.	+	.	ID=Os01t0247600-01;Name=Os01t0247600-01;Locus_id=Os01g0247600;Note=Conserved hypothetical protein.;Transcript_evidence=AK109701 (DDBJ%2C Best hit);ORF_evidence=B9EUN9 (UniProt);NIAS_FLcDNA=002-145-F07;Expression=AK109701;TENOR=Os01t0247600-01;KEGG=Os01t0247600-01
Chr01	irgsp1_rep	five_prime_UTR	8130258	8130465	.	+	.	Parent=Os01t0247600-01
Chr01	irgsp1_rep	CDS	8130466	8130888	.	+	0	Parent=Os01t0247600-01
Chr01	irgsp1_rep	three_prime_UTR	8130889	8130932	.	+	.	Parent=Os01t0247600-01
Chr01	irgsp1_rep	mRNA	8132699	8135454	.	-	.	ID=Os01t0247700-01;Name=Os01t0247700-01;Locus_id=Os01g0247700;Oryzabase Gene Symbol Synonym(s)=SLAC;Oryzabase Gene Name Synonym(s)=SLOW ANION CHANNEL;Note=Similar to inner membrane transport protein.;Transcript_evidence=AK243531 (DDBJ%2C Best hit);ORF_evidence=NP_001147344.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=C4-dicarboxylate transporter/malic acid transport protein (IPR004695);NIAS_FLcDNA=J100077A02;Oryzabase=21757;TENOR=Os01t0247700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	8135422	8135454	.	-	.	Parent=Os01t0247700-01
Chr01	irgsp1_rep	CDS	8134378	8135421	.	-	0	Parent=Os01t0247700-01
Chr01	irgsp1_rep	three_prime_UTR	8132699	8134377	.	-	.	Parent=Os01t0247700-01
Chr01	irgsp1_rep	mRNA	8146442	8148059	.	-	.	ID=Os01t0247900-01;Name=Os01t0247900-01;Locus_id=Os01g0247900;Note=AWPM-19-like family protein.;Transcript_evidence=AK109164 (DDBJ%2C Best hit);ORF_evidence=B6U3T4 (UniProt);InterPro=AWPM-19-like (IPR008390);NIAS_FLcDNA=002-155-G11;Expression=AK109164;TENOR=Os01t0247900-01;KEGG=Os01t0247900-01
Chr01	irgsp1_rep	five_prime_UTR	8147956	8148059	.	-	.	Parent=Os01t0247900-01
Chr01	irgsp1_rep	CDS	8147832	8147955	.	-	0	Parent=Os01t0247900-01
Chr01	irgsp1_rep	CDS	8147329	8147548	.	-	2	Parent=Os01t0247900-01
Chr01	irgsp1_rep	CDS	8146943	8146988	.	-	1	Parent=Os01t0247900-01
Chr01	irgsp1_rep	CDS	8146716	8146841	.	-	0	Parent=Os01t0247900-01
Chr01	irgsp1_rep	three_prime_UTR	8146442	8146715	.	-	.	Parent=Os01t0247900-01
Chr01	irgsp1_rep	mRNA	8152795	8153685	.	-	.	ID=Os01t0248000-01;Name=Os01t0248000-01;Locus_id=Os01g0248000;Note=Stigma-specific protein Stig1 family protein.;Transcript_evidence=AK073588 (DDBJ%2C Best hit);ORF_evidence=A2WMU0 (UniProt);InterPro=Stigma-specific protein Stig1 (IPR006969);NIAS_FLcDNA=J033050N08;Expression=AK073588;TENOR=Os01t0248000-01;KEGG=Os01t0248000-01
Chr01	irgsp1_rep	five_prime_UTR	8153590	8153685	.	-	.	Parent=Os01t0248000-01
Chr01	irgsp1_rep	CDS	8153182	8153589	.	-	0	Parent=Os01t0248000-01
Chr01	irgsp1_rep	three_prime_UTR	8152795	8153181	.	-	.	Parent=Os01t0248000-01
Chr01	irgsp1_rep	mRNA	8159901	8161287	.	+	.	ID=Os01t0248300-00;Name=Os01t0248300-00;Locus_id=Os01g0248300;Note=Similar to Pathogen-related protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B6TQA1 (UniProt);TENOR=Os01t0248300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	8159901	8160050	.	+	0	Parent=Os01t0248300-00
Chr01	irgsp1_rep	CDS	8160178	8160310	.	+	0	Parent=Os01t0248300-00
Chr01	irgsp1_rep	CDS	8160410	8160708	.	+	2	Parent=Os01t0248300-00
Chr01	irgsp1_rep	CDS	8161147	8161287	.	+	0	Parent=Os01t0248300-00
Chr01	irgsp1_rep	mRNA	8159918	8160693	.	-	.	ID=Os01t0248350-00;Name=Os01t0248350-00;Locus_id=Os01g0248350;Note=Hypothetical protein.;Transcript_evidence=AK366258 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0248350-00
Chr01	irgsp1_rep	five_prime_UTR	8160670	8160693	.	-	.	Parent=Os01t0248350-00
Chr01	irgsp1_rep	CDS	8160406	8160669	.	-	0	Parent=Os01t0248350-00
Chr01	irgsp1_rep	three_prime_UTR	8160402	8160405	.	-	.	Parent=Os01t0248350-00
Chr01	irgsp1_rep	three_prime_UTR	8159918	8160281	.	-	.	Parent=Os01t0248350-00
Chr01	irgsp1_rep	mRNA	8170309	8175903	.	+	.	ID=Os01t0248400-01;Name=Os01t0248400-01;Locus_id=Os01g0248400;Note=Similar to Isocitrate dehydrogenase (Fragment).;Transcript_evidence=AK072762 (DDBJ%2C Best hit);ORF_evidence=B9EUP0 (UniProt);GO=Biological Process: isocitrate metabolic process (GO:0006102),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: isocitrate dehydrogenase (NADP+) activity (GO:0004450),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: NAD binding (GO:0051287);InterPro=Isocitrate dehydrogenase NADP-dependent%2C eukaryotic-type (IPR004790),Isocitrate/isopropylmalate dehydrogenase%2C conserved site (IPR019818),Isopropylmalate dehydrogenase-like domain (IPR024084);NIAS_FLcDNA=J023139I05;Expression=AK072762;TENOR=Os01t0248400-01;KEGG=Os01t0248400-01 (EC:1.1.1.42)
Chr01	irgsp1_rep	five_prime_UTR	8170309	8170504	.	+	.	Parent=Os01t0248400-01
Chr01	irgsp1_rep	CDS	8170505	8170553	.	+	0	Parent=Os01t0248400-01
Chr01	irgsp1_rep	CDS	8171395	8171438	.	+	2	Parent=Os01t0248400-01
Chr01	irgsp1_rep	CDS	8171633	8171742	.	+	0	Parent=Os01t0248400-01
Chr01	irgsp1_rep	CDS	8171960	8171997	.	+	1	Parent=Os01t0248400-01
Chr01	irgsp1_rep	CDS	8172109	8172186	.	+	2	Parent=Os01t0248400-01
Chr01	irgsp1_rep	CDS	8172298	8172351	.	+	2	Parent=Os01t0248400-01
Chr01	irgsp1_rep	CDS	8172424	8172525	.	+	2	Parent=Os01t0248400-01
Chr01	irgsp1_rep	CDS	8173679	8173764	.	+	2	Parent=Os01t0248400-01
Chr01	irgsp1_rep	CDS	8173870	8173973	.	+	0	Parent=Os01t0248400-01
Chr01	irgsp1_rep	CDS	8174056	8174124	.	+	1	Parent=Os01t0248400-01
Chr01	irgsp1_rep	CDS	8174210	8174325	.	+	1	Parent=Os01t0248400-01
Chr01	irgsp1_rep	CDS	8174420	8174454	.	+	2	Parent=Os01t0248400-01
Chr01	irgsp1_rep	CDS	8174637	8174779	.	+	0	Parent=Os01t0248400-01
Chr01	irgsp1_rep	CDS	8175105	8175227	.	+	1	Parent=Os01t0248400-01
Chr01	irgsp1_rep	CDS	8175305	8175398	.	+	1	Parent=Os01t0248400-01
Chr01	irgsp1_rep	three_prime_UTR	8175399	8175400	.	+	.	Parent=Os01t0248400-01
Chr01	irgsp1_rep	three_prime_UTR	8175492	8175903	.	+	.	Parent=Os01t0248400-01
Chr01	irgsp1_rep	mRNA	8171631	8175231	.	-	.	ID=Os01t0248450-00;Name=Os01t0248450-00;Locus_id=Os01g0248450;Note=Non-protein coding transcript.;Transcript_evidence=BT016882 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0248450-00
Chr01	irgsp1_rep	exon	8175093	8175231	.	-	.	Parent=Os01t0248450-00
Chr01	irgsp1_rep	exon	8174614	8174768	.	-	.	Parent=Os01t0248450-00
Chr01	irgsp1_rep	exon	8174214	8174332	.	-	.	Parent=Os01t0248450-00
Chr01	irgsp1_rep	exon	8173824	8174041	.	-	.	Parent=Os01t0248450-00
Chr01	irgsp1_rep	exon	8172376	8172567	.	-	.	Parent=Os01t0248450-00
Chr01	irgsp1_rep	exon	8172092	8172192	.	-	.	Parent=Os01t0248450-00
Chr01	irgsp1_rep	exon	8171631	8171756	.	-	.	Parent=Os01t0248450-00
Chr01	irgsp1_rep	mRNA	8175587	8177889	.	-	.	ID=Os01t0248500-01;Name=Os01t0248500-01;Locus_id=Os01g0248500;Note=Similar to Pathogen-related protein.;Transcript_evidence=AK059893 (DDBJ%2C Best hit);ORF_evidence=B6TQA1 (UniProt);NIAS_FLcDNA=006-208-D11;Expression=AK059893;TENOR=Os01t0248500-01;KEGG=Os01t0248500-01
Chr01	irgsp1_rep	five_prime_UTR	8177672	8177889	.	-	.	Parent=Os01t0248500-01
Chr01	irgsp1_rep	CDS	8177525	8177671	.	-	0	Parent=Os01t0248500-01
Chr01	irgsp1_rep	CDS	8177277	8177409	.	-	0	Parent=Os01t0248500-01
Chr01	irgsp1_rep	CDS	8176625	8176923	.	-	2	Parent=Os01t0248500-01
Chr01	irgsp1_rep	CDS	8175958	8176101	.	-	0	Parent=Os01t0248500-01
Chr01	irgsp1_rep	three_prime_UTR	8175587	8175957	.	-	.	Parent=Os01t0248500-01
Chr01	irgsp1_rep	mRNA	8179040	8183108	.	-	.	ID=Os01t0248600-01;Name=Os01t0248600-01;Locus_id=Os01g0248600;CGSNL Gene Symbol=PSF2;CGSNL Gene Name=PARTNER OF SLD FIVE 2;Oryzabase Gene Symbol Synonym(s)=PSF2;Oryzabase Gene Name Synonym(s)=partner of Sld five 2;Note=GINS complex%2C Psf2 component family protein.;Transcript_evidence=AK061039 (DDBJ%2C Best hit),AK100824 (DDBJ%2C Best hit);ORF_evidence=B6SJM9 (UniProt);GO=Biological Process: DNA replication (GO:0006260),Cellular Component: nucleus (GO:0005634);InterPro=GINS complex%2C subunit Psf2 (IPR007257),GINS complex%2C subunit Psf2%2C subgroup (IPR016906),GINS complex (IPR021151);NIAS_FLcDNA=006-205-C12,J023122J02;Oryzabase=7453;Expression=AK061039;TENOR=Os01t0248600-01;KEGG=Os01t0248600-01
Chr01	irgsp1_rep	five_prime_UTR	8182851	8183108	.	-	.	Parent=Os01t0248600-01
Chr01	irgsp1_rep	five_prime_UTR	8181731	8181779	.	-	.	Parent=Os01t0248600-01
Chr01	irgsp1_rep	CDS	8181683	8181730	.	-	0	Parent=Os01t0248600-01
Chr01	irgsp1_rep	CDS	8181505	8181579	.	-	0	Parent=Os01t0248600-01
Chr01	irgsp1_rep	CDS	8181026	8181140	.	-	0	Parent=Os01t0248600-01
Chr01	irgsp1_rep	CDS	8180434	8180533	.	-	2	Parent=Os01t0248600-01
Chr01	irgsp1_rep	CDS	8180311	8180341	.	-	1	Parent=Os01t0248600-01
Chr01	irgsp1_rep	CDS	8180123	8180215	.	-	0	Parent=Os01t0248600-01
Chr01	irgsp1_rep	CDS	8179600	8179752	.	-	0	Parent=Os01t0248600-01
Chr01	irgsp1_rep	CDS	8179318	8179338	.	-	0	Parent=Os01t0248600-01
Chr01	irgsp1_rep	three_prime_UTR	8179040	8179317	.	-	.	Parent=Os01t0248600-01
Chr01	irgsp1_rep	mRNA	8191032	8192289	.	+	.	ID=Os01t0248701-00;Name=Os01t0248701-00;Locus_id=Os01g0248701;Note=Terpenoid synthase domain containing protein.;Transcript_evidence=BT009461 (DDBJ);ORF_evidence=A9ZN20 (UniProt);GO=Biological Process: isoprenoid biosynthetic process (GO:0008299);InterPro=Polyprenyl synthetase (IPR000092),Terpenoid synthase (IPR008949),Polyprenyl synthetase-related (IPR017446);TENOR=Os01t0248701-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	8191032	8192282	.	+	0	Parent=Os01t0248701-00
Chr01	irgsp1_rep	three_prime_UTR	8192283	8192289	.	+	.	Parent=Os01t0248701-00
Chr01	irgsp1_rep	mRNA	8193455	8194256	.	+	.	ID=Os01t0248800-01;Name=Os01t0248800-01;Locus_id=Os01g0248800;Note=Conserved hypothetical protein.;Transcript_evidence=AK062766 (DDBJ%2C Best hit);ORF_evidence=XP_002455366.1 (RefSeq);NIAS_FLcDNA=001-106-H09;Expression=AK062766;TENOR=Os01t0248800-01;KEGG=Os01t0248800-01
Chr01	irgsp1_rep	five_prime_UTR	8193455	8193540	.	+	.	Parent=Os01t0248800-01
Chr01	irgsp1_rep	CDS	8193541	8193669	.	+	0	Parent=Os01t0248800-01
Chr01	irgsp1_rep	CDS	8193973	8194179	.	+	0	Parent=Os01t0248800-01
Chr01	irgsp1_rep	three_prime_UTR	8194180	8194256	.	+	.	Parent=Os01t0248800-01
Chr01	irgsp1_rep	mRNA	8193566	8194125	.	-	.	ID=Os01t0248850-00;Name=Os01t0248850-00;Locus_id=Os01g0248850;Note=Hypothetical gene.;Transcript_evidence=BT062860 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0248850-00
Chr01	irgsp1_rep	CDS	8193566	8194125	.	-	0	Parent=Os01t0248850-00
Chr01	irgsp1_rep	mRNA	8196083	8197096	.	-	.	ID=Os01t0248900-01;Name=Os01t0248900-01;Locus_id=Os01g0248900;RAP-DB Gene Symbol Synonym(s)=EXPA8%2C OsEXPA8%2C OsEXP8%2C osaEXPa1.17;RAP-DB Gene Name Synonym(s)=ALPHA-EXPANSIN 8%2C Expansin-A8%2C Alpha-expansin-8;CGSNL Gene Symbol=EXPA8;CGSNL Gene Name=ALPHA-EXPANSIN 8;Oryzabase Gene Symbol Synonym(s)=OsEXPA8%2C OsEXP8%2C osaEXPa1.17;Oryzabase Gene Name Synonym(s)=Expansin-A8%2C Alpha-expansin-8;Note=Alpha-expansin%2C Mediation of the cell extension and growth%2C Root system architecture;Transcript_evidence=AK111100;ORF_evidence=Q9XHX0;GO=Biological Process: plant-type cell wall organization (GO:0009664),Cellular Component: extracellular region (GO:0005576);InterPro=Expansin/Lol pI (IPR007118),Expansin (IPR002963),RlpA-like protein%2C double-psi beta-barrel domain (IPR009009),Expansin/pollen allergen%2C DPBB domain (IPR007112),Expansin%2C cellulose-binding-like domain (IPR007117);NIAS_FLcDNA=002-175-G12;Manual Curation=December 13%2C 2016;Literature_PMID=24124527;Oryzabase=13485;Expression=AK111100;TENOR=Os01t0248900-01;KEGG=Os01t0248900-01
Chr01	irgsp1_rep	five_prime_UTR	8197088	8197096	.	-	.	Parent=Os01t0248900-01
Chr01	irgsp1_rep	CDS	8196961	8197087	.	-	0	Parent=Os01t0248900-01
Chr01	irgsp1_rep	CDS	8196211	8196839	.	-	2	Parent=Os01t0248900-01
Chr01	irgsp1_rep	three_prime_UTR	8196083	8196210	.	-	.	Parent=Os01t0248900-01
Chr01	irgsp1_rep	mRNA	8201959	8202513	.	+	.	ID=Os01t0249050-00;Name=Os01t0249050-00;Locus_id=Os01g0249050;Note=Hypothetical protein.;Transcript_evidence=BT016845 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0249050-00
Chr01	irgsp1_rep	five_prime_UTR	8201959	8201960	.	+	.	Parent=Os01t0249050-00
Chr01	irgsp1_rep	CDS	8201961	8202513	.	+	0	Parent=Os01t0249050-00
Chr01	irgsp1_rep	mRNA	8202020	8202772	.	-	.	ID=Os01t0249100-00;Name=Os01t0249100-00;Locus_id=Os01g0249100;CGSNL Gene Symbol=EXPA9;CGSNL Gene Name=ALPHA-EXPANSIN 9;Oryzabase Gene Symbol Synonym(s)=OsEXPA9%2C OsEXP9%2C osaEXPa1.19;Oryzabase Gene Name Synonym(s)=Rice expansin-9%2C Expansin-A9%2C Alpha-expansin-9;Note=Similar to Expansin-A9.;Transcript_evidence=DQ061054 (DDBJ%2C Best hit);ORF_evidence=Q4PR53 (UniProt);GO=Biological Process: plant-type cell wall organization (GO:0009664),Cellular Component: extracellular region (GO:0005576);InterPro=Expansin (IPR002963),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);Oryzabase=9371;TENOR=Os01t0249100-00
Chr01	irgsp1_rep	CDS	8202652	8202772	.	-	0	Parent=Os01t0249100-00
Chr01	irgsp1_rep	CDS	8202020	8202553	.	-	2	Parent=Os01t0249100-00
Chr01	irgsp1_rep	mRNA	8203832	8206969	.	-	.	ID=Os01t0249200-01;Name=Os01t0249200-01;Locus_id=Os01g0249200;CGSNL Gene Symbol=GLP1-1;CGSNL Gene Name=GERMIN-LIKE PROTEIN 1-1;Oryzabase Gene Symbol Synonym(s)=OsGLP1-1;Oryzabase Gene Name Synonym(s)=Germin-like protein 1-1;Note=Similar to Nectarin 1 precursor (EC 1.15.1.1) (Superoxide dismutase [Mn]).;Transcript_evidence=AK061046 (DDBJ%2C Best hit);ORF_evidence=Q0GR05 (UniProt);GO=Cellular Component: apoplast (GO:0048046),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),Germin%2C manganese binding site (IPR019780);NIAS_FLcDNA=006-205-E11;Oryzabase=21416;Expression=AK061046;TENOR=Os01t0249200-01;KEGG=Os01t0249200-01 (EC:1.15.1.1)
Chr01	irgsp1_rep	five_prime_UTR	8206870	8206969	.	-	.	Parent=Os01t0249200-01
Chr01	irgsp1_rep	CDS	8206731	8206869	.	-	0	Parent=Os01t0249200-01
Chr01	irgsp1_rep	CDS	8204087	8204631	.	-	2	Parent=Os01t0249200-01
Chr01	irgsp1_rep	three_prime_UTR	8203832	8204086	.	-	.	Parent=Os01t0249200-01
Chr01	irgsp1_rep	mRNA	8212469	8215133	.	-	.	ID=Os01t0249300-01;Name=Os01t0249300-01;Locus_id=Os01g0249300;Note=Lg106-like family protein.;Transcript_evidence=AK066274 (DDBJ%2C Best hit);ORF_evidence=B6T3V2 (UniProt);InterPro=Endosulphine (IPR006760);NIAS_FLcDNA=J013061O18;Expression=AK066274;TENOR=Os01t0249300-01;KEGG=Os01t0249300-01
Chr01	irgsp1_rep	five_prime_UTR	8213691	8215133	.	-	.	Parent=Os01t0249300-01
Chr01	irgsp1_rep	CDS	8213586	8213690	.	-	0	Parent=Os01t0249300-01
Chr01	irgsp1_rep	CDS	8213383	8213445	.	-	0	Parent=Os01t0249300-01
Chr01	irgsp1_rep	CDS	8213254	8213301	.	-	0	Parent=Os01t0249300-01
Chr01	irgsp1_rep	CDS	8213089	8213151	.	-	0	Parent=Os01t0249300-01
Chr01	irgsp1_rep	CDS	8212886	8212946	.	-	0	Parent=Os01t0249300-01
Chr01	irgsp1_rep	CDS	8212752	8212792	.	-	2	Parent=Os01t0249300-01
Chr01	irgsp1_rep	three_prime_UTR	8212469	8212751	.	-	.	Parent=Os01t0249300-01
Chr01	irgsp1_rep	mRNA	8212480	8215091	.	-	.	ID=Os01t0249300-02;Name=Os01t0249300-02;Locus_id=Os01g0249300;Note=Lg106-like family protein.;Transcript_evidence=AK061748 (DDBJ%2C Best hit);ORF_evidence=B6T3V2 (UniProt);InterPro=Endosulphine (IPR006760);NIAS_FLcDNA=001-038-G04;Expression=AK061748;TENOR=Os01t0249300-02;KEGG=Os01t0249300-02
Chr01	irgsp1_rep	five_prime_UTR	8214801	8215091	.	-	.	Parent=Os01t0249300-02
Chr01	irgsp1_rep	five_prime_UTR	8213691	8213694	.	-	.	Parent=Os01t0249300-02
Chr01	irgsp1_rep	CDS	8213586	8213690	.	-	0	Parent=Os01t0249300-02
Chr01	irgsp1_rep	CDS	8213383	8213445	.	-	0	Parent=Os01t0249300-02
Chr01	irgsp1_rep	CDS	8213254	8213301	.	-	0	Parent=Os01t0249300-02
Chr01	irgsp1_rep	CDS	8213089	8213151	.	-	0	Parent=Os01t0249300-02
Chr01	irgsp1_rep	CDS	8212886	8212946	.	-	0	Parent=Os01t0249300-02
Chr01	irgsp1_rep	CDS	8212752	8212792	.	-	2	Parent=Os01t0249300-02
Chr01	irgsp1_rep	three_prime_UTR	8212480	8212751	.	-	.	Parent=Os01t0249300-02
Chr01	irgsp1_rep	mRNA	8229331	8229903	.	+	.	ID=Os01t0249700-00;Name=Os01t0249700-00;Locus_id=Os01g0249700;Note=Heavy metal-associated domain%2C HMA domain containing protein.;Transcript_evidence=AK361799 (DDBJ);ORF_evidence=Q9LIU6 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);TENOR=Os01t0249700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	8229331	8229439	.	+	0	Parent=Os01t0249700-00
Chr01	irgsp1_rep	CDS	8229527	8229903	.	+	2	Parent=Os01t0249700-00
Chr01	irgsp1_rep	mRNA	8233016	8233871	.	+	.	ID=Os01t0249800-00;Name=Os01t0249800-00;Locus_id=Os01g0249800;Note=Heavy metal-associated domain%2C HMA domain containing protein.;Transcript_evidence=AK361799 (DDBJ);ORF_evidence=Q9LIU5 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);TENOR=Os01t0249800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	8233016	8233166	.	+	0	Parent=Os01t0249800-00
Chr01	irgsp1_rep	CDS	8233423	8233871	.	+	2	Parent=Os01t0249800-00
Chr01	irgsp1_rep	mRNA	8234625	8235833	.	-	.	ID=Os01t0249900-01;Name=Os01t0249900-01;Locus_id=Os01g0249900;Note=Protein of unknown function DUF573 family protein.;Transcript_evidence=AK072886 (DDBJ%2C Best hit);ORF_evidence=B9EUP5 (UniProt);InterPro=Protein of unknown function DUF573 (IPR007592);NIAS_FLcDNA=J023149P13;Expression=AK072886;TENOR=Os01t0249900-01;KEGG=Os01t0249900-01
Chr01	irgsp1_rep	CDS	8234895	8235833	.	-	0	Parent=Os01t0249900-01
Chr01	irgsp1_rep	three_prime_UTR	8234625	8234894	.	-	.	Parent=Os01t0249900-01
Chr01	irgsp1_rep	mRNA	8247740	8247985	.	-	.	ID=Os01t0250200-00;Name=Os01t0250200-00;Locus_id=Os01g0250200;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2ZQT9 (UniProt);TENOR=Os01t0250200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	8247740	8247985	.	-	0	Parent=Os01t0250200-00
Chr01	irgsp1_rep	mRNA	8269588	8272570	.	+	.	ID=Os01t0250600-01;Name=Os01t0250600-01;Locus_id=Os01g0250600;Note=Conserved hypothetical protein.;Transcript_evidence=AK101880 (DDBJ%2C Best hit),AK061130 (DDBJ%2C Best hit);ORF_evidence=A2WMW6 (UniProt);NIAS_FLcDNA=J033070K07,006-207-H10;Expression=AK101880;TENOR=Os01t0250600-01;KEGG=Os01t0250600-01
Chr01	irgsp1_rep	five_prime_UTR	8269588	8269823	.	+	.	Parent=Os01t0250600-01
Chr01	irgsp1_rep	five_prime_UTR	8271815	8271925	.	+	.	Parent=Os01t0250600-01
Chr01	irgsp1_rep	CDS	8271926	8272073	.	+	0	Parent=Os01t0250600-01
Chr01	irgsp1_rep	CDS	8272175	8272329	.	+	2	Parent=Os01t0250600-01
Chr01	irgsp1_rep	three_prime_UTR	8272330	8272570	.	+	.	Parent=Os01t0250600-01
Chr01	irgsp1_rep	mRNA	8275474	8283959	.	+	.	ID=Os01t0250900-01;Name=Os01t0250900-01;Locus_id=Os01g0250900;Note=HAD superfamily (subfamily IG) hydrolase%2C 5'-Nucleotidase protein.;Transcript_evidence=AK065179 (DDBJ%2C Best hit);ORF_evidence=B6SV15 (UniProt);InterPro=HAD-superfamily hydrolase%2C subfamily IG%2C 5&apos%3B-nucleotidase (IPR008380),HAD-like domain (IPR023214);NIAS_FLcDNA=J013002D15;Expression=AK065179;TENOR=Os01t0250900-01;KEGG=Os01t0250900-01
Chr01	irgsp1_rep	five_prime_UTR	8275474	8275544	.	+	.	Parent=Os01t0250900-01
Chr01	irgsp1_rep	CDS	8275545	8275890	.	+	0	Parent=Os01t0250900-01
Chr01	irgsp1_rep	CDS	8276149	8276246	.	+	2	Parent=Os01t0250900-01
Chr01	irgsp1_rep	CDS	8277188	8277307	.	+	0	Parent=Os01t0250900-01
Chr01	irgsp1_rep	CDS	8277545	8277634	.	+	0	Parent=Os01t0250900-01
Chr01	irgsp1_rep	CDS	8277721	8277836	.	+	0	Parent=Os01t0250900-01
Chr01	irgsp1_rep	CDS	8277918	8278017	.	+	1	Parent=Os01t0250900-01
Chr01	irgsp1_rep	CDS	8278808	8278879	.	+	0	Parent=Os01t0250900-01
Chr01	irgsp1_rep	CDS	8278954	8279001	.	+	0	Parent=Os01t0250900-01
Chr01	irgsp1_rep	CDS	8279093	8279170	.	+	0	Parent=Os01t0250900-01
Chr01	irgsp1_rep	CDS	8279272	8279391	.	+	0	Parent=Os01t0250900-01
Chr01	irgsp1_rep	CDS	8279496	8279601	.	+	0	Parent=Os01t0250900-01
Chr01	irgsp1_rep	CDS	8280574	8280737	.	+	2	Parent=Os01t0250900-01
Chr01	irgsp1_rep	CDS	8281403	8281537	.	+	0	Parent=Os01t0250900-01
Chr01	irgsp1_rep	CDS	8281766	8281896	.	+	0	Parent=Os01t0250900-01
Chr01	irgsp1_rep	CDS	8282000	8282015	.	+	1	Parent=Os01t0250900-01
Chr01	irgsp1_rep	three_prime_UTR	8282016	8282046	.	+	.	Parent=Os01t0250900-01
Chr01	irgsp1_rep	three_prime_UTR	8282864	8282926	.	+	.	Parent=Os01t0250900-01
Chr01	irgsp1_rep	three_prime_UTR	8283016	8283094	.	+	.	Parent=Os01t0250900-01
Chr01	irgsp1_rep	three_prime_UTR	8283469	8283959	.	+	.	Parent=Os01t0250900-01
Chr01	irgsp1_rep	mRNA	8284469	8289120	.	+	.	ID=Os01t0251000-01;Name=Os01t0251000-01;Locus_id=Os01g0251000;Note=Protein of unknown function DUF3769 domain containing protein.;Transcript_evidence=AK100105 (DDBJ%2C Best hit);ORF_evidence=Q5NBD5 (UniProt);InterPro=Protein of unknown function DUF3769 (IPR022244);NIAS_FLcDNA=J023004L24;Expression=AK100105;TENOR=Os01t0251000-01;KEGG=Os01t0251000-01
Chr01	irgsp1_rep	five_prime_UTR	8284469	8284516	.	+	.	Parent=Os01t0251000-01
Chr01	irgsp1_rep	CDS	8284517	8284782	.	+	0	Parent=Os01t0251000-01
Chr01	irgsp1_rep	CDS	8285551	8285780	.	+	1	Parent=Os01t0251000-01
Chr01	irgsp1_rep	CDS	8286030	8286389	.	+	2	Parent=Os01t0251000-01
Chr01	irgsp1_rep	CDS	8286860	8287197	.	+	2	Parent=Os01t0251000-01
Chr01	irgsp1_rep	CDS	8288399	8288596	.	+	0	Parent=Os01t0251000-01
Chr01	irgsp1_rep	three_prime_UTR	8288597	8289120	.	+	.	Parent=Os01t0251000-01
Chr01	irgsp1_rep	mRNA	8291337	8296089	.	+	.	ID=Os01t0251100-01;Name=Os01t0251100-01;Locus_id=Os01g0251100;Note=Similar to 50S ribosomal protein L3-2%2C chloroplast precursor.;Transcript_evidence=AK073778 (DDBJ%2C Best hit);ORF_evidence=B6TFD9 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L3 (IPR000597),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Ribosomal protein L3%2C conserved site (IPR019926),Ribosomal protein L3%2C bacterial/organelle-type (IPR019927);NIAS_FLcDNA=J033070D07;Expression=AK073778;TENOR=Os01t0251100-01;KEGG=Os01t0251100-01
Chr01	irgsp1_rep	five_prime_UTR	8291337	8291394	.	+	.	Parent=Os01t0251100-01
Chr01	irgsp1_rep	CDS	8291395	8291760	.	+	0	Parent=Os01t0251100-01
Chr01	irgsp1_rep	CDS	8292611	8292820	.	+	0	Parent=Os01t0251100-01
Chr01	irgsp1_rep	CDS	8293874	8293978	.	+	0	Parent=Os01t0251100-01
Chr01	irgsp1_rep	CDS	8295426	8295539	.	+	0	Parent=Os01t0251100-01
Chr01	irgsp1_rep	CDS	8295632	8295796	.	+	0	Parent=Os01t0251100-01
Chr01	irgsp1_rep	three_prime_UTR	8295797	8296089	.	+	.	Parent=Os01t0251100-01
Chr01	irgsp1_rep	mRNA	8291372	8296089	.	+	.	ID=Os01t0251100-02;Name=Os01t0251100-02;Locus_id=Os01g0251100;Note=Similar to 50S ribosomal protein L3-2%2C chloroplast precursor.;Transcript_evidence=AK101781 (DDBJ%2C Best hit);ORF_evidence=B6TFD9 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L3 (IPR000597),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Ribosomal protein L3%2C conserved site (IPR019926),Ribosomal protein L3%2C bacterial/organelle-type (IPR019927);NIAS_FLcDNA=J033064P19;Expression=AK101781;TENOR=Os01t0251100-02;KEGG=Os01t0251100-02
Chr01	irgsp1_rep	five_prime_UTR	8291372	8291394	.	+	.	Parent=Os01t0251100-02
Chr01	irgsp1_rep	CDS	8291395	8291760	.	+	0	Parent=Os01t0251100-02
Chr01	irgsp1_rep	CDS	8292611	8292820	.	+	0	Parent=Os01t0251100-02
Chr01	irgsp1_rep	CDS	8293874	8293978	.	+	0	Parent=Os01t0251100-02
Chr01	irgsp1_rep	CDS	8295426	8295539	.	+	0	Parent=Os01t0251100-02
Chr01	irgsp1_rep	CDS	8295632	8295796	.	+	0	Parent=Os01t0251100-02
Chr01	irgsp1_rep	three_prime_UTR	8295797	8296089	.	+	.	Parent=Os01t0251100-02
Chr01	irgsp1_rep	mRNA	8297615	8302401	.	+	.	ID=Os01t0251200-01;Name=Os01t0251200-01;Locus_id=Os01g0251200;Note=Zinc finger%2C C2H2-like domain containing protein.;Transcript_evidence=AK063298 (DDBJ%2C Best hit);ORF_evidence=B9EUQ0 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=001-113-E12;Expression=AK063298;TENOR=Os01t0251200-01;KEGG=Os01t0251200-01
Chr01	irgsp1_rep	five_prime_UTR	8297615	8297625	.	+	.	Parent=Os01t0251200-01
Chr01	irgsp1_rep	CDS	8297626	8297979	.	+	0	Parent=Os01t0251200-01
Chr01	irgsp1_rep	CDS	8298102	8298422	.	+	0	Parent=Os01t0251200-01
Chr01	irgsp1_rep	CDS	8299978	8300186	.	+	0	Parent=Os01t0251200-01
Chr01	irgsp1_rep	CDS	8300262	8300310	.	+	1	Parent=Os01t0251200-01
Chr01	irgsp1_rep	CDS	8300623	8300710	.	+	0	Parent=Os01t0251200-01
Chr01	irgsp1_rep	CDS	8300818	8302010	.	+	2	Parent=Os01t0251200-01
Chr01	irgsp1_rep	three_prime_UTR	8302011	8302401	.	+	.	Parent=Os01t0251200-01
Chr01	irgsp1_rep	mRNA	8300599	8301367	.	+	.	ID=Os01t0251200-02;Name=Os01t0251200-02;Locus_id=Os01g0251200;Note=Hypothetical conserved gene.;Transcript_evidence=AK108417 (DDBJ%2C Best hit);ORF_evidence=B9EUQ0 (UniProt);NIAS_FLcDNA=002-142-H09;TENOR=Os01t0251200-02
Chr01	irgsp1_rep	five_prime_UTR	8300599	8300622	.	+	.	Parent=Os01t0251200-02
Chr01	irgsp1_rep	CDS	8300623	8300710	.	+	0	Parent=Os01t0251200-02
Chr01	irgsp1_rep	CDS	8300818	8301367	.	+	2	Parent=Os01t0251200-02
Chr01	irgsp1_rep	mRNA	8305749	8306555	.	-	.	ID=Os01t0251400-01;Name=Os01t0251400-01;Locus_id=Os01g0251400;Note=Conserved hypothetical protein.;Transcript_evidence=AK060341 (DDBJ%2C Best hit);ORF_evidence=B8ABS6 (UniProt);NIAS_FLcDNA=001-008-D05;Expression=AK060341;TENOR=Os01t0251400-01;KEGG=Os01t0251400-01
Chr01	irgsp1_rep	five_prime_UTR	8306477	8306555	.	-	.	Parent=Os01t0251400-01
Chr01	irgsp1_rep	CDS	8306387	8306476	.	-	0	Parent=Os01t0251400-01
Chr01	irgsp1_rep	CDS	8305966	8306136	.	-	0	Parent=Os01t0251400-01
Chr01	irgsp1_rep	three_prime_UTR	8305749	8305965	.	-	.	Parent=Os01t0251400-01
Chr01	irgsp1_rep	mRNA	8329791	8333933	.	+	.	ID=Os01t0252100-01;Name=Os01t0252100-01;Locus_id=Os01g0252100;Oryzabase Gene Symbol Synonym(s)=OsSKgamma%2C SKgamma%2C OsSK11/ OsGSK2%2C OsSK11%2C OsGSK2%2C SK11%2C GSK2;Oryzabase Gene Name Synonym(s)=shaggy-like kinase gamma%2C GSK3/SHAGGY-Like Kinase 11%2C GSK3-like Kinase 2;Note=Similar to Glycogen synthase kinase-3 homolog MsK-3 (EC 2.7.1.-).;Transcript_evidence=AK068737 (DDBJ%2C Best hit);ORF_evidence=Q7GC12 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013158B10;Oryzabase=11884;Expression=AK068737;TENOR=Os01t0252100-01;KEGG=Os01t0252100-01 (EC:2.7.11.26)
Chr01	irgsp1_rep	five_prime_UTR	8329791	8329914	.	+	.	Parent=Os01t0252100-01
Chr01	irgsp1_rep	five_prime_UTR	8330952	8331026	.	+	.	Parent=Os01t0252100-01
Chr01	irgsp1_rep	CDS	8331027	8331137	.	+	0	Parent=Os01t0252100-01
Chr01	irgsp1_rep	CDS	8331229	8331321	.	+	0	Parent=Os01t0252100-01
Chr01	irgsp1_rep	CDS	8331445	8331504	.	+	0	Parent=Os01t0252100-01
Chr01	irgsp1_rep	CDS	8331703	8331975	.	+	0	Parent=Os01t0252100-01
Chr01	irgsp1_rep	CDS	8332107	8332181	.	+	0	Parent=Os01t0252100-01
Chr01	irgsp1_rep	CDS	8332269	8332325	.	+	0	Parent=Os01t0252100-01
Chr01	irgsp1_rep	CDS	8332409	8332549	.	+	0	Parent=Os01t0252100-01
Chr01	irgsp1_rep	CDS	8332656	8332706	.	+	0	Parent=Os01t0252100-01
Chr01	irgsp1_rep	CDS	8332795	8332890	.	+	0	Parent=Os01t0252100-01
Chr01	irgsp1_rep	CDS	8332974	8333057	.	+	0	Parent=Os01t0252100-01
Chr01	irgsp1_rep	CDS	8333171	8333273	.	+	0	Parent=Os01t0252100-01
Chr01	irgsp1_rep	CDS	8333451	8333533	.	+	2	Parent=Os01t0252100-01
Chr01	irgsp1_rep	three_prime_UTR	8333534	8333933	.	+	.	Parent=Os01t0252100-01
Chr01	irgsp1_rep	mRNA	8329957	8333859	.	+	.	ID=Os01t0252100-02;Name=Os01t0252100-02;Locus_id=Os01g0252100;Oryzabase Gene Symbol Synonym(s)=OsSKgamma%2C SKgamma%2C OsSK11/ OsGSK2%2C OsSK11%2C OsGSK2%2C SK11%2C GSK2;Oryzabase Gene Name Synonym(s)=shaggy-like kinase gamma%2C GSK3/SHAGGY-Like Kinase 11%2C GSK3-like Kinase 2;Note=Similar to Glycogen synthase kinase-3 homolog MsK-3 (EC 2.7.1.-).;Transcript_evidence=AK099742 (DDBJ%2C Best hit);ORF_evidence=Q7GC12 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013091C23;Oryzabase=11884;Expression=AK099742;TENOR=Os01t0252100-02;KEGG=Os01t0252100-02 (EC:2.7.11.26)
Chr01	irgsp1_rep	five_prime_UTR	8329957	8331026	.	+	.	Parent=Os01t0252100-02
Chr01	irgsp1_rep	CDS	8331027	8331137	.	+	0	Parent=Os01t0252100-02
Chr01	irgsp1_rep	CDS	8331229	8331321	.	+	0	Parent=Os01t0252100-02
Chr01	irgsp1_rep	CDS	8331445	8331504	.	+	0	Parent=Os01t0252100-02
Chr01	irgsp1_rep	CDS	8331703	8331975	.	+	0	Parent=Os01t0252100-02
Chr01	irgsp1_rep	CDS	8332107	8332181	.	+	0	Parent=Os01t0252100-02
Chr01	irgsp1_rep	CDS	8332269	8332325	.	+	0	Parent=Os01t0252100-02
Chr01	irgsp1_rep	CDS	8332409	8332549	.	+	0	Parent=Os01t0252100-02
Chr01	irgsp1_rep	CDS	8332656	8332706	.	+	0	Parent=Os01t0252100-02
Chr01	irgsp1_rep	CDS	8332795	8332890	.	+	0	Parent=Os01t0252100-02
Chr01	irgsp1_rep	CDS	8332974	8333057	.	+	0	Parent=Os01t0252100-02
Chr01	irgsp1_rep	CDS	8333171	8333273	.	+	0	Parent=Os01t0252100-02
Chr01	irgsp1_rep	CDS	8333451	8333533	.	+	2	Parent=Os01t0252100-02
Chr01	irgsp1_rep	three_prime_UTR	8333534	8333859	.	+	.	Parent=Os01t0252100-02
Chr01	irgsp1_rep	mRNA	8330980	8333859	.	+	.	ID=Os01t0252100-03;Name=Os01t0252100-03;Locus_id=Os01g0252100;Oryzabase Gene Symbol Synonym(s)=OsSKgamma%2C SKgamma%2C OsSK11/ OsGSK2%2C OsSK11%2C OsGSK2%2C SK11%2C GSK2;Oryzabase Gene Name Synonym(s)=shaggy-like kinase gamma%2C GSK3/SHAGGY-Like Kinase 11%2C GSK3-like Kinase 2;Note=Similar to Glycogen synthase kinase-3 homolog MsK-3 (EC 2.7.1.-).;Transcript_evidence=AK104687 (DDBJ%2C Best hit);ORF_evidence=Q7GC12 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-036-E09;Oryzabase=11884;Expression=AK104687;TENOR=Os01t0252100-03;KEGG=Os01t0252100-03 (EC:2.7.11.26)
Chr01	irgsp1_rep	five_prime_UTR	8330980	8331026	.	+	.	Parent=Os01t0252100-03
Chr01	irgsp1_rep	CDS	8331027	8331137	.	+	0	Parent=Os01t0252100-03
Chr01	irgsp1_rep	CDS	8331229	8331321	.	+	0	Parent=Os01t0252100-03
Chr01	irgsp1_rep	CDS	8331445	8331504	.	+	0	Parent=Os01t0252100-03
Chr01	irgsp1_rep	CDS	8331703	8331975	.	+	0	Parent=Os01t0252100-03
Chr01	irgsp1_rep	CDS	8332107	8332181	.	+	0	Parent=Os01t0252100-03
Chr01	irgsp1_rep	CDS	8332269	8332325	.	+	0	Parent=Os01t0252100-03
Chr01	irgsp1_rep	CDS	8332409	8332549	.	+	0	Parent=Os01t0252100-03
Chr01	irgsp1_rep	CDS	8332656	8332706	.	+	0	Parent=Os01t0252100-03
Chr01	irgsp1_rep	CDS	8332795	8332890	.	+	0	Parent=Os01t0252100-03
Chr01	irgsp1_rep	CDS	8332974	8333057	.	+	0	Parent=Os01t0252100-03
Chr01	irgsp1_rep	CDS	8333171	8333273	.	+	0	Parent=Os01t0252100-03
Chr01	irgsp1_rep	CDS	8333451	8333533	.	+	2	Parent=Os01t0252100-03
Chr01	irgsp1_rep	three_prime_UTR	8333534	8333859	.	+	.	Parent=Os01t0252100-03
Chr01	irgsp1_rep	mRNA	8331441	8333267	.	-	.	ID=Os01t0252150-00;Name=Os01t0252150-00;Locus_id=Os01g0252150;Note=Hypothetical protein.;Transcript_evidence=tplb0034j24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0252150-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	8333168	8333267	.	-	.	Parent=Os01t0252150-00
Chr01	irgsp1_rep	five_prime_UTR	8332983	8333055	.	-	.	Parent=Os01t0252150-00
Chr01	irgsp1_rep	CDS	8332972	8332982	.	-	0	Parent=Os01t0252150-00
Chr01	irgsp1_rep	CDS	8332771	8332888	.	-	1	Parent=Os01t0252150-00
Chr01	irgsp1_rep	CDS	8332450	8332566	.	-	0	Parent=Os01t0252150-00
Chr01	irgsp1_rep	three_prime_UTR	8332351	8332449	.	-	.	Parent=Os01t0252150-00
Chr01	irgsp1_rep	three_prime_UTR	8332128	8332178	.	-	.	Parent=Os01t0252150-00
Chr01	irgsp1_rep	three_prime_UTR	8331694	8331994	.	-	.	Parent=Os01t0252150-00
Chr01	irgsp1_rep	three_prime_UTR	8331441	8331497	.	-	.	Parent=Os01t0252150-00
Chr01	irgsp1_rep	mRNA	8334519	8338574	.	+	.	ID=Os01t0252200-01;Name=Os01t0252200-01;Locus_id=Os01g0252200;CGSNL Gene Symbol=C3H3;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsC3H3;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 3;Note=Zinc finger%2C CCCH-type domain containing protein.;Transcript_evidence=AK071420 (DDBJ%2C Best hit);ORF_evidence=B8ABS8 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571),Zinc finger%2C U1-type (IPR003604),Zinc finger%2C U1-C type (IPR013085);NIAS_FLcDNA=J023090K17;Oryzabase=8594;TENOR=Os01t0252200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	8334519	8334591	.	+	.	Parent=Os01t0252200-01
Chr01	irgsp1_rep	CDS	8334592	8334727	.	+	0	Parent=Os01t0252200-01
Chr01	irgsp1_rep	CDS	8334811	8334899	.	+	2	Parent=Os01t0252200-01
Chr01	irgsp1_rep	CDS	8335000	8335078	.	+	0	Parent=Os01t0252200-01
Chr01	irgsp1_rep	CDS	8336123	8336218	.	+	2	Parent=Os01t0252200-01
Chr01	irgsp1_rep	CDS	8337325	8337428	.	+	2	Parent=Os01t0252200-01
Chr01	irgsp1_rep	three_prime_UTR	8337429	8338574	.	+	.	Parent=Os01t0252200-01
Chr01	irgsp1_rep	mRNA	8339050	8339456	.	-	.	ID=Os01t0252300-01;Name=Os01t0252300-01;Locus_id=Os01g0252300;Note=Conserved hypothetical protein.;Transcript_evidence=AK242398 (DDBJ%2C Best hit);ORF_evidence=NP_001172259.1 (RefSeq);NIAS_FLcDNA=J080068A10;TENOR=Os01t0252300-01;KEGG=Os01t0252300-01
Chr01	irgsp1_rep	five_prime_UTR	8339425	8339456	.	-	.	Parent=Os01t0252300-01
Chr01	irgsp1_rep	CDS	8339182	8339424	.	-	0	Parent=Os01t0252300-01
Chr01	irgsp1_rep	three_prime_UTR	8339050	8339181	.	-	.	Parent=Os01t0252300-01
Chr01	irgsp1_rep	mRNA	8339174	8339709	.	+	.	ID=Os01t0252400-01;Name=Os01t0252400-01;Locus_id=Os01g0252400;Note=Hypothetical gene.;Transcript_evidence=AK063327 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-113-H08;Expression=AK063327;TENOR=Os01t0252400-01;KEGG=Os01t0252400-01
Chr01	irgsp1_rep	five_prime_UTR	8339174	8339304	.	+	.	Parent=Os01t0252400-01
Chr01	irgsp1_rep	CDS	8339305	8339529	.	+	0	Parent=Os01t0252400-01
Chr01	irgsp1_rep	three_prime_UTR	8339530	8339709	.	+	.	Parent=Os01t0252400-01
Chr01	irgsp1_rep	mRNA	8344471	8346041	.	+	.	ID=Os01t0252600-00;Name=Os01t0252600-00;Locus_id=Os01g0252600;Note=Similar to predicted protein.;Transcript_evidence=CT835001 (DDBJ%2C Best hit);ORF_evidence=B8ABT0 (UniProt);TENOR=Os01t0252600-00;KEGG=Os01t0252600-00
Chr01	irgsp1_rep	five_prime_UTR	8344471	8344479	.	+	.	Parent=Os01t0252600-00
Chr01	irgsp1_rep	CDS	8344480	8344791	.	+	0	Parent=Os01t0252600-00
Chr01	irgsp1_rep	CDS	8344898	8345037	.	+	0	Parent=Os01t0252600-00
Chr01	irgsp1_rep	CDS	8345136	8345324	.	+	1	Parent=Os01t0252600-00
Chr01	irgsp1_rep	CDS	8345458	8345509	.	+	1	Parent=Os01t0252600-00
Chr01	irgsp1_rep	CDS	8345588	8345695	.	+	0	Parent=Os01t0252600-00
Chr01	irgsp1_rep	three_prime_UTR	8345696	8346041	.	+	.	Parent=Os01t0252600-00
Chr01	irgsp1_rep	mRNA	8359017	8362270	.	-	.	ID=Os01t0252900-01;Name=Os01t0252900-01;Locus_id=Os01g0252900;Oryzabase Gene Symbol Synonym(s)=OsZFP%2C ZFP;Oryzabase Gene Name Synonym(s)=zinc finger protein;Note=Zinc finger%2C CCHC-type domain containing protein.;Transcript_evidence=AK105250 (DDBJ%2C Best hit);ORF_evidence=XP_002878450.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Zinc finger%2C CCHC retroviral-type (IPR013084);NIAS_FLcDNA=001-114-C08;Oryzabase=21686;Expression=AK105250;TENOR=Os01t0252900-01;KEGG=Os01t0252900-01
Chr01	irgsp1_rep	five_prime_UTR	8362111	8362270	.	-	.	Parent=Os01t0252900-01
Chr01	irgsp1_rep	five_prime_UTR	8361037	8361079	.	-	.	Parent=Os01t0252900-01
Chr01	irgsp1_rep	CDS	8360722	8361036	.	-	0	Parent=Os01t0252900-01
Chr01	irgsp1_rep	CDS	8359208	8359720	.	-	0	Parent=Os01t0252900-01
Chr01	irgsp1_rep	three_prime_UTR	8359017	8359207	.	-	.	Parent=Os01t0252900-01
Chr01	irgsp1_rep	mRNA	8364116	8365711	.	-	.	ID=Os01t0253000-01;Name=Os01t0253000-01;Locus_id=Os01g0253000;Note=Similar to LpimPth3.;Transcript_evidence=AK071644 (DDBJ%2C Best hit);ORF_evidence=Q5NBC2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J023107E01;Expression=AK071644;TENOR=Os01t0253000-01;KEGG=Os01t0253000-01
Chr01	irgsp1_rep	five_prime_UTR	8365586	8365711	.	-	.	Parent=Os01t0253000-01
Chr01	irgsp1_rep	CDS	8364272	8365585	.	-	0	Parent=Os01t0253000-01
Chr01	irgsp1_rep	three_prime_UTR	8364116	8364271	.	-	.	Parent=Os01t0253000-01
Chr01	irgsp1_rep	mRNA	8364602	8366959	.	+	.	ID=Os01t0253050-00;Name=Os01t0253050-00;Locus_id=Os01g0253050;Note=Conserved hypothetical protein.;Transcript_evidence=EU957207 (DDBJ);ORF_evidence=NP_001042608.1 (RefSeq);TENOR=Os01t0253050-00
Chr01	irgsp1_rep	five_prime_UTR	8364602	8364610	.	+	.	Parent=Os01t0253050-00
Chr01	irgsp1_rep	CDS	8364611	8366959	.	+	0	Parent=Os01t0253050-00
Chr01	irgsp1_rep	mRNA	8367189	8375401	.	-	.	ID=Os01t0253100-01;Name=Os01t0253100-01;Locus_id=Os01g0253100;Note=Similar to Avr9/Cf-9 induced kinase 1.;Transcript_evidence=AK067133 (DDBJ%2C Best hit);ORF_evidence=B9EV01 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013094I21;Expression=AK067133;TENOR=Os01t0253100-01;KEGG=Os01t0253100-01
Chr01	irgsp1_rep	five_prime_UTR	8375087	8375401	.	-	.	Parent=Os01t0253100-01
Chr01	irgsp1_rep	CDS	8375053	8375086	.	-	0	Parent=Os01t0253100-01
Chr01	irgsp1_rep	CDS	8372958	8373248	.	-	2	Parent=Os01t0253100-01
Chr01	irgsp1_rep	CDS	8372784	8372864	.	-	2	Parent=Os01t0253100-01
Chr01	irgsp1_rep	CDS	8370610	8370984	.	-	2	Parent=Os01t0253100-01
Chr01	irgsp1_rep	CDS	8369639	8369851	.	-	2	Parent=Os01t0253100-01
Chr01	irgsp1_rep	CDS	8369036	8369407	.	-	2	Parent=Os01t0253100-01
Chr01	irgsp1_rep	CDS	8368630	8368873	.	-	2	Parent=Os01t0253100-01
Chr01	irgsp1_rep	CDS	8368403	8368550	.	-	1	Parent=Os01t0253100-01
Chr01	irgsp1_rep	CDS	8367475	8367843	.	-	0	Parent=Os01t0253100-01
Chr01	irgsp1_rep	three_prime_UTR	8367189	8367474	.	-	.	Parent=Os01t0253100-01
Chr01	irgsp1_rep	mRNA	8367277	8373144	.	-	.	ID=Os01t0253100-02;Name=Os01t0253100-02;Locus_id=Os01g0253100;Note=Hypothetical conserved gene.;Transcript_evidence=AK061932 (DDBJ%2C Best hit);ORF_evidence=B9EV01 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-042-C12;Expression=AK061932;TENOR=Os01t0253100-02;KEGG=Os01t0253100-02
Chr01	irgsp1_rep	CDS	8372958	8373144	.	-	0	Parent=Os01t0253100-02
Chr01	irgsp1_rep	CDS	8372784	8372864	.	-	2	Parent=Os01t0253100-02
Chr01	irgsp1_rep	CDS	8370610	8370984	.	-	2	Parent=Os01t0253100-02
Chr01	irgsp1_rep	CDS	8369639	8369851	.	-	2	Parent=Os01t0253100-02
Chr01	irgsp1_rep	CDS	8369036	8369407	.	-	2	Parent=Os01t0253100-02
Chr01	irgsp1_rep	CDS	8368630	8368873	.	-	2	Parent=Os01t0253100-02
Chr01	irgsp1_rep	CDS	8368403	8368550	.	-	1	Parent=Os01t0253100-02
Chr01	irgsp1_rep	CDS	8367475	8367843	.	-	0	Parent=Os01t0253100-02
Chr01	irgsp1_rep	three_prime_UTR	8367277	8367474	.	-	.	Parent=Os01t0253100-02
Chr01	irgsp1_rep	mRNA	8380048	8380745	.	+	.	ID=Os01t0253200-00;Name=Os01t0253200-00;Locus_id=Os01g0253200;Note=Similar to pectinesterase inhibitor domain containing protein.;Transcript_evidence=tplb0011f19 (Wheat FLcDNA);ORF_evidence=NP_001148594.1 (RefSeq);GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);TENOR=Os01t0253200-00;KEGG=Os01t0253200-00
Chr01	irgsp1_rep	five_prime_UTR	8380048	8380052	.	+	.	Parent=Os01t0253200-00
Chr01	irgsp1_rep	CDS	8380053	8380586	.	+	0	Parent=Os01t0253200-00
Chr01	irgsp1_rep	three_prime_UTR	8380587	8380745	.	+	.	Parent=Os01t0253200-00
Chr01	irgsp1_rep	mRNA	8382115	8387230	.	+	.	ID=Os01t0253300-01;Name=Os01t0253300-01;Locus_id=Os01g0253300;CGSNL Gene Symbol=IMPA1A;CGSNL Gene Name=IMPORTIN ALPHA 1A;Oryzabase Gene Symbol Synonym(s)=rImpa1a%2C Impa1a%2C Osimpa1%2C Osimpalpha1%2C OsImpalpha1a%2C Impalpha1a;Oryzabase Gene Name Synonym(s)=importin-alpha1a%2C importin a1a%2C importin alpha1a;Note=Importin alpha-1a subunit.;Transcript_evidence=AK068233 (DDBJ%2C Best hit);ORF_evidence=B6T451 (UniProt);GO=Biological Process: protein import into nucleus (GO:0006606),Biological Process: intracellular protein transport (GO:0006886),Cellular Component: nucleus (GO:0005634),Cellular Component: cytoplasm (GO:0005737),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515),Molecular Function: protein transporter activity (GO:0008565);InterPro=Armadillo (IPR000225),Importin-alpha%2C importin-beta-binding domain (IPR002652),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013149A11;Oryzabase=12256;Expression=AK068233;TENOR=Os01t0253300-01;KEGG=Os01t0253300-01
Chr01	irgsp1_rep	five_prime_UTR	8382115	8382280	.	+	.	Parent=Os01t0253300-01
Chr01	irgsp1_rep	CDS	8382281	8382490	.	+	0	Parent=Os01t0253300-01
Chr01	irgsp1_rep	CDS	8383353	8383449	.	+	0	Parent=Os01t0253300-01
Chr01	irgsp1_rep	CDS	8383546	8383637	.	+	2	Parent=Os01t0253300-01
Chr01	irgsp1_rep	CDS	8383729	8383860	.	+	0	Parent=Os01t0253300-01
Chr01	irgsp1_rep	CDS	8383975	8384160	.	+	0	Parent=Os01t0253300-01
Chr01	irgsp1_rep	CDS	8384244	8384407	.	+	0	Parent=Os01t0253300-01
Chr01	irgsp1_rep	CDS	8384514	8384592	.	+	1	Parent=Os01t0253300-01
Chr01	irgsp1_rep	CDS	8385484	8385612	.	+	0	Parent=Os01t0253300-01
Chr01	irgsp1_rep	CDS	8386102	8386229	.	+	0	Parent=Os01t0253300-01
Chr01	irgsp1_rep	CDS	8386348	8386711	.	+	1	Parent=Os01t0253300-01
Chr01	irgsp1_rep	three_prime_UTR	8386712	8386717	.	+	.	Parent=Os01t0253300-01
Chr01	irgsp1_rep	three_prime_UTR	8386842	8387230	.	+	.	Parent=Os01t0253300-01
Chr01	irgsp1_rep	mRNA	8382155	8387231	.	+	.	ID=Os01t0253300-02;Name=Os01t0253300-02;Locus_id=Os01g0253300;CGSNL Gene Symbol=IMPA1A;CGSNL Gene Name=IMPORTIN ALPHA 1A;Oryzabase Gene Symbol Synonym(s)=rImpa1a%2C Impa1a%2C Osimpa1%2C Osimpalpha1%2C OsImpalpha1a%2C Impalpha1a;Oryzabase Gene Name Synonym(s)=importin-alpha1a%2C importin a1a%2C importin alpha1a;Note=Importin alpha-1a subunit.;Transcript_evidence=AK099336 (DDBJ%2C Best hit);ORF_evidence=B6T451 (UniProt);GO=Biological Process: protein import into nucleus (GO:0006606),Biological Process: intracellular protein transport (GO:0006886),Cellular Component: nucleus (GO:0005634),Cellular Component: cytoplasm (GO:0005737),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515),Molecular Function: protein transporter activity (GO:0008565);InterPro=Armadillo (IPR000225),Importin-alpha%2C importin-beta-binding domain (IPR002652),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033020P11;Oryzabase=12256;Expression=AK099336;TENOR=Os01t0253300-02;KEGG=Os01t0253300-02
Chr01	irgsp1_rep	five_prime_UTR	8382155	8382280	.	+	.	Parent=Os01t0253300-02
Chr01	irgsp1_rep	CDS	8382281	8382490	.	+	0	Parent=Os01t0253300-02
Chr01	irgsp1_rep	CDS	8383353	8383449	.	+	0	Parent=Os01t0253300-02
Chr01	irgsp1_rep	CDS	8383546	8383637	.	+	2	Parent=Os01t0253300-02
Chr01	irgsp1_rep	CDS	8383729	8383860	.	+	0	Parent=Os01t0253300-02
Chr01	irgsp1_rep	CDS	8383975	8384160	.	+	0	Parent=Os01t0253300-02
Chr01	irgsp1_rep	CDS	8384244	8384407	.	+	0	Parent=Os01t0253300-02
Chr01	irgsp1_rep	CDS	8384514	8384592	.	+	1	Parent=Os01t0253300-02
Chr01	irgsp1_rep	CDS	8385484	8385612	.	+	0	Parent=Os01t0253300-02
Chr01	irgsp1_rep	CDS	8386102	8386229	.	+	0	Parent=Os01t0253300-02
Chr01	irgsp1_rep	CDS	8386348	8386711	.	+	1	Parent=Os01t0253300-02
Chr01	irgsp1_rep	three_prime_UTR	8386712	8386717	.	+	.	Parent=Os01t0253300-02
Chr01	irgsp1_rep	three_prime_UTR	8386842	8387231	.	+	.	Parent=Os01t0253300-02
Chr01	irgsp1_rep	mRNA	8387589	8388859	.	-	.	ID=Os01t0253400-01;Name=Os01t0253400-01;Locus_id=Os01g0253400;Note=Protein of unknown function DUF1218 family protein.;Transcript_evidence=AK108904 (DDBJ%2C Best hit);ORF_evidence=Q9S809 (UniProt);InterPro=Protein of unknown function DUF1218 (IPR009606);NIAS_FLcDNA=002-152-F09;Expression=AK108904;TENOR=Os01t0253400-01;KEGG=Os01t0253400-01
Chr01	irgsp1_rep	five_prime_UTR	8388792	8388859	.	-	.	Parent=Os01t0253400-01
Chr01	irgsp1_rep	CDS	8388322	8388791	.	-	0	Parent=Os01t0253400-01
Chr01	irgsp1_rep	CDS	8387813	8388236	.	-	1	Parent=Os01t0253400-01
Chr01	irgsp1_rep	three_prime_UTR	8387589	8387812	.	-	.	Parent=Os01t0253400-01
Chr01	irgsp1_rep	mRNA	8394453	8395607	.	+	.	ID=Os01t0253500-01;Name=Os01t0253500-01;Locus_id=Os01g0253500;Note=Conserved hypothetical protein.;Transcript_evidence=AK243648 (DDBJ%2C Best hit);ORF_evidence=NP_001172261.1 (RefSeq);NIAS_FLcDNA=J100088F12;TENOR=Os01t0253500-01;KEGG=Os01t0253500-01
Chr01	irgsp1_rep	five_prime_UTR	8394453	8394518	.	+	.	Parent=Os01t0253500-01
Chr01	irgsp1_rep	CDS	8394519	8395475	.	+	0	Parent=Os01t0253500-01
Chr01	irgsp1_rep	three_prime_UTR	8395476	8395607	.	+	.	Parent=Os01t0253500-01
Chr01	irgsp1_rep	mRNA	8396551	8398584	.	-	.	ID=Os01t0253600-01;Name=Os01t0253600-01;Locus_id=Os01g0253600;Oryzabase Gene Symbol Synonym(s)=OsRPA14%2C RPA14%2C RPA3;Oryzabase Gene Name Synonym(s)=Replication protein A 14kDa subunit%2C replication protein A 14kDa%2C single-stranded DNA binding complex subunit 3;Note=Replication factor A protein 3 domain containing protein.;Transcript_evidence=AK058837 (DDBJ%2C Best hit);ORF_evidence=NP_001152271.1 (RefSeq);InterPro=Nucleic acid-binding%2C OB-fold (IPR012340),Replication factor A protein 3 (IPR013970),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=001-004-D02;Oryzabase=14082;Expression=AK058837;TENOR=Os01t0253600-01;KEGG=Os01t0253600-01
Chr01	irgsp1_rep	five_prime_UTR	8398479	8398584	.	-	.	Parent=Os01t0253600-01
Chr01	irgsp1_rep	five_prime_UTR	8398029	8398030	.	-	.	Parent=Os01t0253600-01
Chr01	irgsp1_rep	CDS	8397773	8398028	.	-	0	Parent=Os01t0253600-01
Chr01	irgsp1_rep	CDS	8396848	8396912	.	-	2	Parent=Os01t0253600-01
Chr01	irgsp1_rep	three_prime_UTR	8396551	8396847	.	-	.	Parent=Os01t0253600-01
Chr01	irgsp1_rep	mRNA	8401548	8402325	.	-	.	ID=Os01t0253800-00;Name=Os01t0253800-00;Locus_id=Os01g0253800;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001172262.1 (RefSeq);TENOR=Os01t0253800-00;KEGG=Os01t0253800-00
Chr01	irgsp1_rep	CDS	8402232	8402325	.	-	0	Parent=Os01t0253800-00
Chr01	irgsp1_rep	CDS	8402052	8402140	.	-	2	Parent=Os01t0253800-00
Chr01	irgsp1_rep	CDS	8401548	8401892	.	-	0	Parent=Os01t0253800-00
Chr01	irgsp1_rep	mRNA	8404247	8408348	.	+	.	ID=Os01t0253900-01;Name=Os01t0253900-01;Locus_id=Os01g0253900;Oryzabase Gene Name Synonym(s)=class III lipase;Note=Similar to triacylglycerol lipase.;Transcript_evidence=AK072113 (DDBJ%2C Best hit);ORF_evidence=NP_001148192.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921);NIAS_FLcDNA=J013123H08;Oryzabase=23066;Expression=AK072113;TENOR=Os01t0253900-01;KEGG=Os01t0253900-01
Chr01	irgsp1_rep	five_prime_UTR	8404247	8404583	.	+	.	Parent=Os01t0253900-01
Chr01	irgsp1_rep	CDS	8404584	8405195	.	+	0	Parent=Os01t0253900-01
Chr01	irgsp1_rep	CDS	8405837	8406346	.	+	0	Parent=Os01t0253900-01
Chr01	irgsp1_rep	CDS	8406434	8406493	.	+	0	Parent=Os01t0253900-01
Chr01	irgsp1_rep	CDS	8406721	8407137	.	+	0	Parent=Os01t0253900-01
Chr01	irgsp1_rep	CDS	8407576	8408100	.	+	0	Parent=Os01t0253900-01
Chr01	irgsp1_rep	three_prime_UTR	8408101	8408348	.	+	.	Parent=Os01t0253900-01
Chr01	irgsp1_rep	mRNA	8404250	8408353	.	+	.	ID=Os01t0253900-02;Name=Os01t0253900-02;Locus_id=Os01g0253900;Oryzabase Gene Name Synonym(s)=class III lipase;Note=Lipase%2C class 3 family protein.;Transcript_evidence=AK067101 (DDBJ%2C Best hit);ORF_evidence=NP_001148192.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921);NIAS_FLcDNA=J013098K12;Oryzabase=23066;Expression=AK067101;TENOR=Os01t0253900-02;KEGG=Os01t0253900-02
Chr01	irgsp1_rep	five_prime_UTR	8404250	8404327	.	+	.	Parent=Os01t0253900-02
Chr01	irgsp1_rep	CDS	8404328	8404329	.	+	0	Parent=Os01t0253900-02
Chr01	irgsp1_rep	CDS	8404919	8405195	.	+	1	Parent=Os01t0253900-02
Chr01	irgsp1_rep	CDS	8405837	8406346	.	+	0	Parent=Os01t0253900-02
Chr01	irgsp1_rep	CDS	8406434	8406493	.	+	0	Parent=Os01t0253900-02
Chr01	irgsp1_rep	CDS	8406721	8407137	.	+	0	Parent=Os01t0253900-02
Chr01	irgsp1_rep	CDS	8407576	8408100	.	+	0	Parent=Os01t0253900-02
Chr01	irgsp1_rep	three_prime_UTR	8408101	8408353	.	+	.	Parent=Os01t0253900-02
Chr01	irgsp1_rep	mRNA	8413916	8418925	.	-	.	ID=Os01t0254000-01;Name=Os01t0254000-01;Locus_id=Os01g0254000;CGSNL Gene Symbol=SAR1C;CGSNL Gene Name=SECRETION-ASSOCIATED%2C RAS-RELATED PROTEIN 1C;Oryzabase Gene Symbol Synonym(s)=OsARL1d%2C ARL1d%2C OsSar1c%2C Sar1c;Oryzabase Gene Name Synonym(s)=ARF-like protein 1d%2C "secretion-associated%2C Ras-related protein1c";Note=Similar to NTGB2 (Fragment).;Transcript_evidence=AK111904 (DDBJ%2C Best hit),AK111979 (DDBJ%2C Best hit),AK119548 (DDBJ%2C Best hit);ORF_evidence=B4FPT6 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: small GTPase mediated signal transduction (GO:0007264),Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C SAR1-type (IPR006687),Small GTPase superfamily%2C ARF/SAR type (IPR006689),Small GTPase superfamily%2C ARF type (IPR024156);NIAS_FLcDNA=J023112F13,001-008-G03,001-207-C09;Oryzabase=21018;TENOR=Os01t0254000-01
Chr01	irgsp1_rep	five_prime_UTR	8418813	8418925	.	-	.	Parent=Os01t0254000-01
Chr01	irgsp1_rep	CDS	8418684	8418812	.	-	0	Parent=Os01t0254000-01
Chr01	irgsp1_rep	CDS	8418472	8418603	.	-	0	Parent=Os01t0254000-01
Chr01	irgsp1_rep	CDS	8414269	8414589	.	-	0	Parent=Os01t0254000-01
Chr01	irgsp1_rep	three_prime_UTR	8413916	8414268	.	-	.	Parent=Os01t0254000-01
Chr01	irgsp1_rep	mRNA	8420995	8430280	.	-	.	ID=Os01t0254100-01;Name=Os01t0254100-01;Locus_id=Os01g0254100;Oryzabase Gene Symbol Synonym(s)=OsWD40-12%2C TPR1%2C OsTPR1;Oryzabase Gene Name Synonym(s)=TOPLESS-RELATED PROTEIN 1;Note=Similar to CTV.2.;Transcript_evidence=AK111762 (DDBJ%2C Best hit);ORF_evidence=Q2HW32 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),LisH dimerisation motif (IPR006594),CTLH%2C C-terminal LisH motif (IPR006595),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J023061P18;Oryzabase=10693;Expression=AK111762;TENOR=Os01t0254100-01;KEGG=Os01t0254100-01
Chr01	irgsp1_rep	five_prime_UTR	8430006	8430280	.	-	.	Parent=Os01t0254100-01
Chr01	irgsp1_rep	CDS	8429926	8430005	.	-	0	Parent=Os01t0254100-01
Chr01	irgsp1_rep	CDS	8428669	8428848	.	-	1	Parent=Os01t0254100-01
Chr01	irgsp1_rep	CDS	8428423	8428536	.	-	1	Parent=Os01t0254100-01
Chr01	irgsp1_rep	CDS	8427523	8427681	.	-	1	Parent=Os01t0254100-01
Chr01	irgsp1_rep	CDS	8427237	8427411	.	-	1	Parent=Os01t0254100-01
Chr01	irgsp1_rep	CDS	8427029	8427152	.	-	0	Parent=Os01t0254100-01
Chr01	irgsp1_rep	CDS	8426215	8426315	.	-	2	Parent=Os01t0254100-01
Chr01	irgsp1_rep	CDS	8425999	8426134	.	-	0	Parent=Os01t0254100-01
Chr01	irgsp1_rep	CDS	8425741	8425850	.	-	2	Parent=Os01t0254100-01
Chr01	irgsp1_rep	CDS	8425584	8425650	.	-	0	Parent=Os01t0254100-01
Chr01	irgsp1_rep	CDS	8425431	8425504	.	-	2	Parent=Os01t0254100-01
Chr01	irgsp1_rep	CDS	8425214	8425309	.	-	0	Parent=Os01t0254100-01
Chr01	irgsp1_rep	CDS	8425042	8425134	.	-	0	Parent=Os01t0254100-01
Chr01	irgsp1_rep	CDS	8424724	8424851	.	-	0	Parent=Os01t0254100-01
Chr01	irgsp1_rep	CDS	8424402	8424642	.	-	1	Parent=Os01t0254100-01
Chr01	irgsp1_rep	CDS	8424160	8424327	.	-	0	Parent=Os01t0254100-01
Chr01	irgsp1_rep	CDS	8423983	8424078	.	-	0	Parent=Os01t0254100-01
Chr01	irgsp1_rep	CDS	8423714	8423869	.	-	0	Parent=Os01t0254100-01
Chr01	irgsp1_rep	CDS	8423524	8423634	.	-	0	Parent=Os01t0254100-01
Chr01	irgsp1_rep	CDS	8423266	8423445	.	-	0	Parent=Os01t0254100-01
Chr01	irgsp1_rep	CDS	8423064	8423192	.	-	0	Parent=Os01t0254100-01
Chr01	irgsp1_rep	CDS	8422885	8422980	.	-	0	Parent=Os01t0254100-01
Chr01	irgsp1_rep	CDS	8422556	8422738	.	-	0	Parent=Os01t0254100-01
Chr01	irgsp1_rep	CDS	8422272	8422447	.	-	0	Parent=Os01t0254100-01
Chr01	irgsp1_rep	CDS	8421454	8421670	.	-	1	Parent=Os01t0254100-01
Chr01	irgsp1_rep	three_prime_UTR	8420995	8421453	.	-	.	Parent=Os01t0254100-01
Chr01	irgsp1_rep	mRNA	8422323	8430151	.	-	.	ID=Os01t0254100-02;Name=Os01t0254100-02;Locus_id=Os01g0254100;Oryzabase Gene Symbol Synonym(s)=OsWD40-12%2C TPR1%2C OsTPR1;Oryzabase Gene Name Synonym(s)=TOPLESS-RELATED PROTEIN 1;Note=Similar to Lissencephaly type-1-like homology motif%3B CTLH%2C C-terminal to LisH motif%3B Nitrous oxide reductase%2C N-terminal%3B WD40-like%3B Quinonprotein alcohol dehydrogenase-like.;Transcript_evidence=AK111583 (DDBJ%2C Best hit);ORF_evidence=Q2HW32 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),LisH dimerisation motif (IPR006594),CTLH%2C C-terminal LisH motif (IPR006595),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J013090J18;Oryzabase=10693;TENOR=Os01t0254100-02
Chr01	irgsp1_rep	five_prime_UTR	8430006	8430151	.	-	.	Parent=Os01t0254100-02
Chr01	irgsp1_rep	CDS	8429926	8430005	.	-	0	Parent=Os01t0254100-02
Chr01	irgsp1_rep	CDS	8428669	8428848	.	-	1	Parent=Os01t0254100-02
Chr01	irgsp1_rep	CDS	8428423	8428536	.	-	1	Parent=Os01t0254100-02
Chr01	irgsp1_rep	CDS	8427523	8427681	.	-	1	Parent=Os01t0254100-02
Chr01	irgsp1_rep	CDS	8427237	8427411	.	-	1	Parent=Os01t0254100-02
Chr01	irgsp1_rep	CDS	8427029	8427152	.	-	0	Parent=Os01t0254100-02
Chr01	irgsp1_rep	CDS	8426215	8426282	.	-	2	Parent=Os01t0254100-02
Chr01	irgsp1_rep	CDS	8425999	8426134	.	-	0	Parent=Os01t0254100-02
Chr01	irgsp1_rep	CDS	8425741	8425850	.	-	2	Parent=Os01t0254100-02
Chr01	irgsp1_rep	CDS	8425584	8425650	.	-	0	Parent=Os01t0254100-02
Chr01	irgsp1_rep	CDS	8425431	8425504	.	-	2	Parent=Os01t0254100-02
Chr01	irgsp1_rep	CDS	8425214	8425309	.	-	0	Parent=Os01t0254100-02
Chr01	irgsp1_rep	CDS	8425042	8425134	.	-	0	Parent=Os01t0254100-02
Chr01	irgsp1_rep	CDS	8424724	8424851	.	-	0	Parent=Os01t0254100-02
Chr01	irgsp1_rep	CDS	8424402	8424642	.	-	1	Parent=Os01t0254100-02
Chr01	irgsp1_rep	CDS	8424160	8424327	.	-	0	Parent=Os01t0254100-02
Chr01	irgsp1_rep	CDS	8423983	8424078	.	-	0	Parent=Os01t0254100-02
Chr01	irgsp1_rep	CDS	8423714	8423869	.	-	0	Parent=Os01t0254100-02
Chr01	irgsp1_rep	CDS	8423524	8423634	.	-	0	Parent=Os01t0254100-02
Chr01	irgsp1_rep	CDS	8423266	8423445	.	-	0	Parent=Os01t0254100-02
Chr01	irgsp1_rep	CDS	8423064	8423192	.	-	0	Parent=Os01t0254100-02
Chr01	irgsp1_rep	CDS	8422885	8422980	.	-	0	Parent=Os01t0254100-02
Chr01	irgsp1_rep	CDS	8422556	8422738	.	-	0	Parent=Os01t0254100-02
Chr01	irgsp1_rep	CDS	8422323	8422447	.	-	0	Parent=Os01t0254100-02
Chr01	irgsp1_rep	mRNA	8444463	8447053	.	-	.	ID=Os01t0254200-01;Name=Os01t0254200-01;Locus_id=Os01g0254200;Note=Conserved hypothetical protein.;Transcript_evidence=AK121256 (DDBJ%2C Best hit);ORF_evidence=A2WMZ3 (UniProt);NIAS_FLcDNA=J023102F21;Expression=AK121256;TENOR=Os01t0254200-01;KEGG=Os01t0254200-01
Chr01	irgsp1_rep	five_prime_UTR	8446851	8447053	.	-	.	Parent=Os01t0254200-01
Chr01	irgsp1_rep	five_prime_UTR	8444926	8444934	.	-	.	Parent=Os01t0254200-01
Chr01	irgsp1_rep	CDS	8444737	8444925	.	-	0	Parent=Os01t0254200-01
Chr01	irgsp1_rep	three_prime_UTR	8444463	8444736	.	-	.	Parent=Os01t0254200-01
Chr01	irgsp1_rep	mRNA	8447731	8451489	.	-	.	ID=Os01t0254300-00;Name=Os01t0254300-00;Locus_id=Os01g0254300;Oryzabase Gene Symbol Synonym(s)=OsPME1;Oryzabase Gene Name Synonym(s)=pectin methylesterase 1;Note=Pectinesterase (EC 3.1.1.11) (Fragment).;Transcript_evidence=EU974973 (DDBJ);ORF_evidence=B4F9U3 (UniProt);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectinesterase inhibitor (IPR006501),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),Pectinesterase%2C active site (IPR018040);Oryzabase=13165;TENOR=Os01t0254300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	8450334	8451489	.	-	0	Parent=Os01t0254300-00
Chr01	irgsp1_rep	CDS	8447761	8448440	.	-	2	Parent=Os01t0254300-00
Chr01	irgsp1_rep	three_prime_UTR	8447731	8447760	.	-	.	Parent=Os01t0254300-00
Chr01	irgsp1_rep	mRNA	8448082	8450982	.	+	.	ID=Os01t0254350-00;Name=Os01t0254350-00;Locus_id=Os01g0254350;Note=Hypothetical gene.;Transcript_evidence=BT085732 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0254350-00;KEGG=Os01t0254350-00
Chr01	irgsp1_rep	five_prime_UTR	8448082	8448099	.	+	.	Parent=Os01t0254350-00
Chr01	irgsp1_rep	CDS	8448100	8448440	.	+	0	Parent=Os01t0254350-00
Chr01	irgsp1_rep	CDS	8450334	8450685	.	+	1	Parent=Os01t0254350-00
Chr01	irgsp1_rep	three_prime_UTR	8450686	8450982	.	+	.	Parent=Os01t0254350-00
Chr01	irgsp1_rep	mRNA	8455342	8456022	.	+	.	ID=Os01t0254400-00;Name=Os01t0254400-00;Locus_id=Os01g0254400;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5NBT7 (UniProt);TENOR=Os01t0254400-00;KEGG=Os01t0254400-00
Chr01	irgsp1_rep	CDS	8455342	8456022	.	+	0	Parent=Os01t0254400-00
Chr01	irgsp1_rep	mRNA	8466262	8469359	.	-	.	ID=Os01t0254800-01;Name=Os01t0254800-01;Locus_id=Os01g0254800;Note=Hypothetical conserved gene.;Transcript_evidence=AK067017 (DDBJ%2C Best hit);ORF_evidence=NP_001048415.1 (RefSeq);NIAS_FLcDNA=J013089L24;Expression=AK067017;TENOR=Os01t0254800-01;KEGG=Os01t0254800-01
Chr01	irgsp1_rep	five_prime_UTR	8467969	8469359	.	-	.	Parent=Os01t0254800-01
Chr01	irgsp1_rep	CDS	8467794	8467968	.	-	0	Parent=Os01t0254800-01
Chr01	irgsp1_rep	CDS	8466312	8466442	.	-	2	Parent=Os01t0254800-01
Chr01	irgsp1_rep	three_prime_UTR	8466262	8466311	.	-	.	Parent=Os01t0254800-01
Chr01	irgsp1_rep	mRNA	8471334	8472108	.	-	.	ID=Os01t0254850-00;Name=Os01t0254850-00;Locus_id=Os01g0254850;Note=Hypothetical conserved gene.;Transcript_evidence=CT834921 (DDBJ%2C Best hit);ORF_evidence=Q5NBT3 (UniProt);TENOR=Os01t0254850-00;KEGG=Os01t0254850-00
Chr01	irgsp1_rep	five_prime_UTR	8471965	8472108	.	-	.	Parent=Os01t0254850-00
Chr01	irgsp1_rep	CDS	8471374	8471964	.	-	0	Parent=Os01t0254850-00
Chr01	irgsp1_rep	three_prime_UTR	8471334	8471373	.	-	.	Parent=Os01t0254850-00
Chr01	irgsp1_rep	mRNA	8475504	8479452	.	-	.	ID=Os01t0254900-01;Name=Os01t0254900-01;Locus_id=Os01g0254900;Note=Similar to Syntaxin 22 (AtSYP22) (AtVAM3).;Transcript_evidence=AK068204 (DDBJ%2C Best hit);ORF_evidence=Q5S1U0 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: membrane (GO:0016020),Molecular Function: SNAP receptor activity (GO:0005484),Molecular Function: protein binding (GO:0005515);InterPro=Target SNARE coiled-coil domain (IPR000727),Syntaxin%2C N-terminal (IPR006011),Syntaxin/epimorphin%2C conserved site (IPR006012),t-SNARE (IPR010989);NIAS_FLcDNA=J013136O09;Expression=AK068204;TENOR=Os01t0254900-01;KEGG=Os01t0254900-01
Chr01	irgsp1_rep	five_prime_UTR	8479272	8479452	.	-	.	Parent=Os01t0254900-01
Chr01	irgsp1_rep	CDS	8479063	8479271	.	-	0	Parent=Os01t0254900-01
Chr01	irgsp1_rep	CDS	8478284	8478377	.	-	1	Parent=Os01t0254900-01
Chr01	irgsp1_rep	CDS	8477528	8477667	.	-	0	Parent=Os01t0254900-01
Chr01	irgsp1_rep	CDS	8476554	8476628	.	-	1	Parent=Os01t0254900-01
Chr01	irgsp1_rep	CDS	8476248	8476405	.	-	1	Parent=Os01t0254900-01
Chr01	irgsp1_rep	CDS	8476028	8476128	.	-	2	Parent=Os01t0254900-01
Chr01	irgsp1_rep	CDS	8475869	8475934	.	-	0	Parent=Os01t0254900-01
Chr01	irgsp1_rep	three_prime_UTR	8475504	8475868	.	-	.	Parent=Os01t0254900-01
Chr01	irgsp1_rep	mRNA	8478876	8479870	.	+	.	ID=Os01t0254950-01;Name=Os01t0254950-01;Locus_id=Os01g0254950;Note=Hypothetical gene.;Transcript_evidence=AK287984 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J075090B22;TENOR=Os01t0254950-01;KEGG=Os01t0254950-01
Chr01	irgsp1_rep	CDS	8478876	8479694	.	+	0	Parent=Os01t0254950-01
Chr01	irgsp1_rep	three_prime_UTR	8479695	8479870	.	+	.	Parent=Os01t0254950-01
Chr01	irgsp1_rep	mRNA	8486578	8489618	.	+	.	ID=Os01t0255000-01;Name=Os01t0255000-01;Locus_id=Os01g0255000;Note=Similar to Soluble epoxide hydrolase.;Transcript_evidence=AK109484 (DDBJ%2C Best hit),AK102341 (DDBJ%2C Best hit);ORF_evidence=NP_001148885.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Epoxide hydrolase-like (IPR000639);NIAS_FLcDNA=001-202-G06,J033091B05;TENOR=Os01t0255000-01
Chr01	irgsp1_rep	five_prime_UTR	8486578	8486654	.	+	.	Parent=Os01t0255000-01
Chr01	irgsp1_rep	CDS	8486655	8487134	.	+	0	Parent=Os01t0255000-01
Chr01	irgsp1_rep	CDS	8488725	8488966	.	+	0	Parent=Os01t0255000-01
Chr01	irgsp1_rep	CDS	8489254	8489500	.	+	1	Parent=Os01t0255000-01
Chr01	irgsp1_rep	three_prime_UTR	8489501	8489618	.	+	.	Parent=Os01t0255000-01
Chr01	irgsp1_rep	mRNA	8490582	8492345	.	+	.	ID=Os01t0255100-01;Name=Os01t0255100-01;Locus_id=Os01g0255100;Note=Similar to Soluble epoxide hydrolase.;Transcript_evidence=AK058528 (DDBJ%2C Best hit);ORF_evidence=NP_001148885.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Epoxide hydrolase-like (IPR000639);NIAS_FLcDNA=001-017-A04;Expression=AK058528;TENOR=Os01t0255100-01;KEGG=Os01t0255100-01
Chr01	irgsp1_rep	five_prime_UTR	8490582	8490871	.	+	.	Parent=Os01t0255100-01
Chr01	irgsp1_rep	CDS	8490872	8491168	.	+	0	Parent=Os01t0255100-01
Chr01	irgsp1_rep	CDS	8491280	8491462	.	+	0	Parent=Os01t0255100-01
Chr01	irgsp1_rep	CDS	8491667	8491908	.	+	0	Parent=Os01t0255100-01
Chr01	irgsp1_rep	CDS	8491988	8492240	.	+	1	Parent=Os01t0255100-01
Chr01	irgsp1_rep	three_prime_UTR	8492241	8492345	.	+	.	Parent=Os01t0255100-01
Chr01	irgsp1_rep	mRNA	8523748	8525716	.	-	.	ID=Os01t0255700-00;Name=Os01t0255700-00;Locus_id=Os01g0255700;Note=Conserved hypothetical protein.;Transcript_evidence=EU947173 (DDBJ);ORF_evidence=Q5NBS7 (UniProt);TENOR=Os01t0255700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	8525171	8525716	.	-	0	Parent=Os01t0255700-00
Chr01	irgsp1_rep	three_prime_UTR	8525103	8525170	.	-	.	Parent=Os01t0255700-00
Chr01	irgsp1_rep	three_prime_UTR	8523748	8523912	.	-	.	Parent=Os01t0255700-00
Chr01	irgsp1_rep	mRNA	8535675	8537264	.	-	.	ID=Os01t0256300-00;Name=Os01t0256300-00;Locus_id=Os01g0256300;Note=Conserved hypothetical protein.;Transcript_evidence=AK357815 (DDBJ);ORF_evidence=Q1EHU3 (UniProt);TENOR=Os01t0256300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	8535675	8537264	.	-	0	Parent=Os01t0256300-00
Chr01	irgsp1_rep	mRNA	8540755	8544460	.	+	.	ID=Os01t0256400-01;Name=Os01t0256400-01;Locus_id=Os01g0256400;Note=Similar to Dynein light chain 1 protein DLC-1 (Fragment).;Transcript_evidence=AK107950 (DDBJ%2C Best hit);ORF_evidence=B4FI70 (UniProt);GO=Biological Process: microtubule-based process (GO:0007017),Cellular Component: microtubule associated complex (GO:0005875);InterPro=Dynein light chain%2C type 1/2 (IPR001372),Dynein light chain%2C type 1/2%2C conserved site (IPR019763);NIAS_FLcDNA=002-135-B10;Expression=AK107950;TENOR=Os01t0256400-01;KEGG=Os01t0256400-01
Chr01	irgsp1_rep	five_prime_UTR	8540755	8540820	.	+	.	Parent=Os01t0256400-01
Chr01	irgsp1_rep	CDS	8540821	8541024	.	+	0	Parent=Os01t0256400-01
Chr01	irgsp1_rep	CDS	8541132	8541237	.	+	0	Parent=Os01t0256400-01
Chr01	irgsp1_rep	CDS	8544118	8544200	.	+	2	Parent=Os01t0256400-01
Chr01	irgsp1_rep	three_prime_UTR	8544201	8544460	.	+	.	Parent=Os01t0256400-01
Chr01	irgsp1_rep	mRNA	8546065	8546869	.	-	.	ID=Os01t0256500-02;Name=Os01t0256500-02;Locus_id=Os01g0256500;Note=Similar to ZnI.;Transcript_evidence=AK069098 (DDBJ%2C Best hit),AK119698 (DDBJ%2C Best hit);ORF_evidence=B1PXF8 (UniProt);NIAS_FLcDNA=J023007B04,002-157-D03;TENOR=Os01t0256500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	8546773	8546869	.	-	.	Parent=Os01t0256500-02
Chr01	irgsp1_rep	CDS	8546452	8546772	.	-	0	Parent=Os01t0256500-02
Chr01	irgsp1_rep	three_prime_UTR	8546065	8546451	.	-	.	Parent=Os01t0256500-02
Chr01	irgsp1_rep	mRNA	8555289	8557146	.	-	.	ID=Os01t0256600-01;Name=Os01t0256600-01;Locus_id=Os01g0256600;Note=Ribosomal protein L18/L5 domain containing protein.;Transcript_evidence=AK063884 (DDBJ%2C Best hit),AK099373 (DDBJ%2C Best hit);ORF_evidence=NP_001150322.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L18/L5 (IPR005484);NIAS_FLcDNA=001-122-F11,J033063M10;Expression=AK063884;TENOR=Os01t0256600-01;KEGG=Os01t0256600-01
Chr01	irgsp1_rep	five_prime_UTR	8557003	8557146	.	-	.	Parent=Os01t0256600-01
Chr01	irgsp1_rep	five_prime_UTR	8555848	8555865	.	-	.	Parent=Os01t0256600-01
Chr01	irgsp1_rep	CDS	8555503	8555847	.	-	0	Parent=Os01t0256600-01
Chr01	irgsp1_rep	three_prime_UTR	8555289	8555502	.	-	.	Parent=Os01t0256600-01
Chr01	irgsp1_rep	mRNA	8560625	8569629	.	-	.	ID=Os01t0256800-01;Name=Os01t0256800-01;Locus_id=Os01g0256800;CGSNL Gene Symbol=C3H4;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OsC3H4;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 4;Note=Similar to zinc finger helicase family protein.;Transcript_evidence=AK100311 (DDBJ%2C Best hit);ORF_evidence=XP_002882127.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=Zinc finger%2C CCCH-type (IPR000571),Helicase%2C C-terminal (IPR001650),ATPase%2C AAA+ type%2C core (IPR003593),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J023078K23;Oryzabase=8605;TENOR=Os01t0256800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	8569538	8569629	.	-	.	Parent=Os01t0256800-01
Chr01	irgsp1_rep	CDS	8569402	8569537	.	-	0	Parent=Os01t0256800-01
Chr01	irgsp1_rep	CDS	8568385	8568571	.	-	2	Parent=Os01t0256800-01
Chr01	irgsp1_rep	CDS	8567592	8567765	.	-	1	Parent=Os01t0256800-01
Chr01	irgsp1_rep	CDS	8567303	8567450	.	-	1	Parent=Os01t0256800-01
Chr01	irgsp1_rep	CDS	8566186	8566497	.	-	0	Parent=Os01t0256800-01
Chr01	irgsp1_rep	CDS	8565434	8565580	.	-	0	Parent=Os01t0256800-01
Chr01	irgsp1_rep	CDS	8565161	8565341	.	-	0	Parent=Os01t0256800-01
Chr01	irgsp1_rep	CDS	8563611	8563894	.	-	2	Parent=Os01t0256800-01
Chr01	irgsp1_rep	CDS	8563411	8563530	.	-	0	Parent=Os01t0256800-01
Chr01	irgsp1_rep	CDS	8562967	8563111	.	-	0	Parent=Os01t0256800-01
Chr01	irgsp1_rep	CDS	8562377	8562642	.	-	2	Parent=Os01t0256800-01
Chr01	irgsp1_rep	CDS	8562095	8562283	.	-	0	Parent=Os01t0256800-01
Chr01	irgsp1_rep	CDS	8561456	8561977	.	-	0	Parent=Os01t0256800-01
Chr01	irgsp1_rep	CDS	8561008	8561220	.	-	0	Parent=Os01t0256800-01
Chr01	irgsp1_rep	three_prime_UTR	8560625	8561007	.	-	.	Parent=Os01t0256800-01
Chr01	irgsp1_rep	mRNA	8560807	8563767	.	-	.	ID=Os01t0256800-02;Name=Os01t0256800-02;Locus_id=Os01g0256800;CGSNL Gene Symbol=C3H4;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OsC3H4;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 4;Note=Hypothetical conserved gene.;Transcript_evidence=AK111789 (DDBJ%2C Best hit);ORF_evidence=B9EV14 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=J023092H03;Oryzabase=8605;Expression=AK111789;TENOR=Os01t0256800-02;KEGG=Os01t0256800-02
Chr01	irgsp1_rep	five_prime_UTR	8563767	8563767	.	-	.	Parent=Os01t0256800-02
Chr01	irgsp1_rep	CDS	8563611	8563766	.	-	0	Parent=Os01t0256800-02
Chr01	irgsp1_rep	CDS	8563411	8563530	.	-	0	Parent=Os01t0256800-02
Chr01	irgsp1_rep	CDS	8562967	8563111	.	-	0	Parent=Os01t0256800-02
Chr01	irgsp1_rep	CDS	8562377	8562642	.	-	2	Parent=Os01t0256800-02
Chr01	irgsp1_rep	CDS	8562095	8562283	.	-	0	Parent=Os01t0256800-02
Chr01	irgsp1_rep	CDS	8561456	8561977	.	-	0	Parent=Os01t0256800-02
Chr01	irgsp1_rep	CDS	8561008	8561220	.	-	0	Parent=Os01t0256800-02
Chr01	irgsp1_rep	three_prime_UTR	8560807	8561007	.	-	.	Parent=Os01t0256800-02
Chr01	irgsp1_rep	mRNA	8570880	8574555	.	-	.	ID=Os01t0256900-01;Name=Os01t0256900-01;Locus_id=Os01g0256900;Oryzabase Gene Name Synonym(s)=Sm gene%2C Sm family protein;Note=Similar to SmX6 protein.;Transcript_evidence=AK100819 (DDBJ%2C Best hit);ORF_evidence=NP_001152235.1 (RefSeq);InterPro=Like-Sm ribonucleoprotein (LSM) domain (IPR001163),Like-Sm ribonucleoprotein (LSM) domain%2C eukaryotic/archaea-type (IPR006649),Like-Sm ribonucleoprotein (LSM)-related domain (IPR010920);NIAS_FLcDNA=J023122F24;Oryzabase=15635;Expression=AK100819;TENOR=Os01t0256900-01;KEGG=Os01t0256900-01
Chr01	irgsp1_rep	five_prime_UTR	8574305	8574555	.	-	.	Parent=Os01t0256900-01
Chr01	irgsp1_rep	CDS	8574302	8574304	.	-	0	Parent=Os01t0256900-01
Chr01	irgsp1_rep	CDS	8574168	8574209	.	-	0	Parent=Os01t0256900-01
Chr01	irgsp1_rep	CDS	8573972	8574070	.	-	0	Parent=Os01t0256900-01
Chr01	irgsp1_rep	CDS	8573624	8573701	.	-	0	Parent=Os01t0256900-01
Chr01	irgsp1_rep	CDS	8572037	8572079	.	-	0	Parent=Os01t0256900-01
Chr01	irgsp1_rep	CDS	8571258	8571413	.	-	2	Parent=Os01t0256900-01
Chr01	irgsp1_rep	CDS	8571139	8571161	.	-	2	Parent=Os01t0256900-01
Chr01	irgsp1_rep	three_prime_UTR	8570880	8571138	.	-	.	Parent=Os01t0256900-01
Chr01	irgsp1_rep	mRNA	8577244	8577934	.	-	.	ID=Os01t0257100-01;Name=Os01t0257100-01;Locus_id=Os01g0257100;CGSNL Gene Symbol=RALF5;CGSNL Gene Name=RAPID ALKALIZATION FACTOR 5;Oryzabase Gene Symbol Synonym(s)=OsRALF-5%2C OsRALF5%2C RALF-5;Oryzabase Gene Name Synonym(s)=Rapid alkalization factor 5;Note=Rapid ALkalinization Factor family protein.;Transcript_evidence=AK243243 (DDBJ%2C Best hit);ORF_evidence=NP_001150840.1 (RefSeq);InterPro=Rapid ALkalinization Factor (IPR008801);NIAS_FLcDNA=J100046K16;Oryzabase=21109;TENOR=Os01t0257100-01;KEGG=Os01t0257100-01
Chr01	irgsp1_rep	five_prime_UTR	8577894	8577934	.	-	.	Parent=Os01t0257100-01
Chr01	irgsp1_rep	CDS	8577498	8577893	.	-	0	Parent=Os01t0257100-01
Chr01	irgsp1_rep	three_prime_UTR	8577244	8577497	.	-	.	Parent=Os01t0257100-01
Chr01	irgsp1_rep	mRNA	8586157	8586941	.	-	.	ID=Os01t0257300-01;Name=Os01t0257300-01;Locus_id=Os01g0257300;CGSNL Gene Symbol=RAA1;CGSNL Gene Name=ROOT ARCHITECTURE ASSOCIATED 1;Oryzabase Gene Symbol Synonym(s)=OsRAA1%2C OsFPFL1%2C FPFL1;Oryzabase Gene Name Synonym(s)=root architecture associated-1%2C FPF1-like protein 1%2C FPF1-like 1%2C flowering-promoting factor 1-like 1;Note=Similar to FPF1.;Transcript_evidence=AK070626 (DDBJ%2C Best hit);ORF_evidence=NP_001151726.1 (RefSeq);NIAS_FLcDNA=J023056F13;Oryzabase=6285;Expression=AK070626;TENOR=Os01t0257300-01;KEGG=Os01t0257300-01
Chr01	irgsp1_rep	five_prime_UTR	8586847	8586941	.	-	.	Parent=Os01t0257300-01
Chr01	irgsp1_rep	CDS	8586517	8586846	.	-	0	Parent=Os01t0257300-01
Chr01	irgsp1_rep	three_prime_UTR	8586157	8586516	.	-	.	Parent=Os01t0257300-01
Chr01	irgsp1_rep	mRNA	8593792	8599448	.	-	.	ID=Os01t0257400-01;Name=Os01t0257400-01;Locus_id=Os01g0257400;CGSNL Gene Symbol=C3H5;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 5;Oryzabase Gene Symbol Synonym(s)=OsC3H5;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 5%2C Zinc finger CCCH domain-containing protein ZFN-like 3;Note=Zinc finger%2C CCCH-type domain containing protein.;Transcript_evidence=AK073920 (DDBJ%2C Best hit);ORF_evidence=Q5NAV3 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=J033073E09;Oryzabase=8616;Expression=AK073920;TENOR=Os01t0257400-01;KEGG=Os01t0257400-01
Chr01	irgsp1_rep	five_prime_UTR	8599153	8599448	.	-	.	Parent=Os01t0257400-01
Chr01	irgsp1_rep	CDS	8599080	8599152	.	-	0	Parent=Os01t0257400-01
Chr01	irgsp1_rep	CDS	8598750	8598931	.	-	2	Parent=Os01t0257400-01
Chr01	irgsp1_rep	CDS	8598152	8598220	.	-	0	Parent=Os01t0257400-01
Chr01	irgsp1_rep	CDS	8597865	8597978	.	-	0	Parent=Os01t0257400-01
Chr01	irgsp1_rep	CDS	8597506	8597784	.	-	0	Parent=Os01t0257400-01
Chr01	irgsp1_rep	CDS	8596611	8596931	.	-	0	Parent=Os01t0257400-01
Chr01	irgsp1_rep	CDS	8594414	8594776	.	-	0	Parent=Os01t0257400-01
Chr01	irgsp1_rep	three_prime_UTR	8593792	8594413	.	-	.	Parent=Os01t0257400-01
Chr01	irgsp1_rep	mRNA	8626746	8630032	.	-	.	ID=Os01t0257900-01;Name=Os01t0257900-01;Locus_id=Os01g0257900;Note=Hypothetical protein.;Transcript_evidence=AK119383 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-132-B08;TENOR=Os01t0257900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	8628981	8630032	.	-	.	Parent=Os01t0257900-01
Chr01	irgsp1_rep	CDS	8628660	8628980	.	-	0	Parent=Os01t0257900-01
Chr01	irgsp1_rep	three_prime_UTR	8626746	8628659	.	-	.	Parent=Os01t0257900-01
Chr01	irgsp1_rep	mRNA	8627878	8629136	.	+	.	ID=Os01t0258000-01;Name=Os01t0258000-01;Locus_id=Os01g0258000;Note=Conserved hypothetical protein.;Transcript_evidence=AK108960 (DDBJ%2C Best hit);ORF_evidence=A2WN19 (UniProt);NIAS_FLcDNA=002-153-D02;TENOR=Os01t0258000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	8627878	8628725	.	+	.	Parent=Os01t0258000-01
Chr01	irgsp1_rep	CDS	8628726	8628776	.	+	0	Parent=Os01t0258000-01
Chr01	irgsp1_rep	CDS	8628934	8629038	.	+	0	Parent=Os01t0258000-01
Chr01	irgsp1_rep	three_prime_UTR	8629039	8629136	.	+	.	Parent=Os01t0258000-01
Chr01	irgsp1_rep	mRNA	8631638	8633592	.	-	.	ID=Os01t0258100-01;Name=Os01t0258100-01;Locus_id=Os01g0258100;Note=Hypothetical conserved gene.;Transcript_evidence=AK073329 (DDBJ%2C Best hit);ORF_evidence=B8AIB9 (UniProt);NIAS_FLcDNA=J033024B22;Expression=AK073329;TENOR=Os01t0258100-01;KEGG=Os01t0258100-01
Chr01	irgsp1_rep	five_prime_UTR	8633477	8633592	.	-	.	Parent=Os01t0258100-01
Chr01	irgsp1_rep	five_prime_UTR	8632924	8633375	.	-	.	Parent=Os01t0258100-01
Chr01	irgsp1_rep	five_prime_UTR	8632719	8632731	.	-	.	Parent=Os01t0258100-01
Chr01	irgsp1_rep	CDS	8632669	8632718	.	-	0	Parent=Os01t0258100-01
Chr01	irgsp1_rep	CDS	8632412	8632505	.	-	1	Parent=Os01t0258100-01
Chr01	irgsp1_rep	three_prime_UTR	8631638	8632411	.	-	.	Parent=Os01t0258100-01
Chr01	irgsp1_rep	mRNA	8630485	8633521	.	-	.	ID=Os01t0258100-02;Name=Os01t0258100-02;Locus_id=Os01g0258100;Note=Hypothetical conserved gene.;Transcript_evidence=AK101657 (DDBJ%2C Best hit);ORF_evidence=B8AIB9 (UniProt);NIAS_FLcDNA=J033057G16;Expression=AK101657;TENOR=Os01t0258100-02;KEGG=Os01t0258100-02
Chr01	irgsp1_rep	five_prime_UTR	8633477	8633521	.	-	.	Parent=Os01t0258100-02
Chr01	irgsp1_rep	five_prime_UTR	8632924	8633375	.	-	.	Parent=Os01t0258100-02
Chr01	irgsp1_rep	five_prime_UTR	8632719	8632731	.	-	.	Parent=Os01t0258100-02
Chr01	irgsp1_rep	CDS	8632669	8632718	.	-	0	Parent=Os01t0258100-02
Chr01	irgsp1_rep	CDS	8632412	8632505	.	-	1	Parent=Os01t0258100-02
Chr01	irgsp1_rep	three_prime_UTR	8630485	8632411	.	-	.	Parent=Os01t0258100-02
Chr01	irgsp1_rep	mRNA	8657086	8658466	.	+	.	ID=Os01t0258600-00;Name=Os01t0258600-00;Locus_id=Os01g0258600;CGSNL Gene Symbol=DPL1;CGSNL Gene Name=DOPPELGANGER 1;Oryzabase Gene Name Synonym(s)=DOPPELGANGER1;Note=Similar to predicted protein.;Transcript_evidence=CT828253 (DDBJ%2C Best hit);ORF_evidence=E3W9Z9 (UniProt);Oryzabase=8859;TENOR=Os01t0258600-00;KEGG=Os01t0258600-00
Chr01	irgsp1_rep	five_prime_UTR	8657086	8657147	.	+	.	Parent=Os01t0258600-00
Chr01	irgsp1_rep	five_prime_UTR	8657433	8657443	.	+	.	Parent=Os01t0258600-00
Chr01	irgsp1_rep	CDS	8657444	8657693	.	+	0	Parent=Os01t0258600-00
Chr01	irgsp1_rep	CDS	8658098	8658132	.	+	2	Parent=Os01t0258600-00
Chr01	irgsp1_rep	three_prime_UTR	8658133	8658466	.	+	.	Parent=Os01t0258600-00
Chr01	irgsp1_rep	mRNA	8659413	8664796	.	-	.	ID=Os01t0258700-01;Name=Os01t0258700-01;Locus_id=Os01g0258700;CGSNL Gene Symbol=C3H6;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsC3H6;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 6%2C Zinc finger CCCH domain-containing protein ZFN-like 1;Note=Zinc finger%2C CCCH-type domain containing protein.;Transcript_evidence=AK111903 (DDBJ%2C Best hit),AK111727 (DDBJ%2C Best hit);ORF_evidence=B7F3Z8 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=J023093O12,J023039E23;Oryzabase=8626;Expression=AK111903;TENOR=Os01t0258700-01;KEGG=Os01t0258700-01
Chr01	irgsp1_rep	five_prime_UTR	8664634	8664796	.	-	.	Parent=Os01t0258700-01
Chr01	irgsp1_rep	CDS	8664552	8664633	.	-	0	Parent=Os01t0258700-01
Chr01	irgsp1_rep	CDS	8664204	8664397	.	-	2	Parent=Os01t0258700-01
Chr01	irgsp1_rep	CDS	8663142	8663210	.	-	0	Parent=Os01t0258700-01
Chr01	irgsp1_rep	CDS	8662781	8662897	.	-	0	Parent=Os01t0258700-01
Chr01	irgsp1_rep	CDS	8662416	8662694	.	-	0	Parent=Os01t0258700-01
Chr01	irgsp1_rep	CDS	8661730	8662050	.	-	0	Parent=Os01t0258700-01
Chr01	irgsp1_rep	CDS	8660091	8660459	.	-	0	Parent=Os01t0258700-01
Chr01	irgsp1_rep	three_prime_UTR	8660041	8660090	.	-	.	Parent=Os01t0258700-01
Chr01	irgsp1_rep	three_prime_UTR	8659413	8659946	.	-	.	Parent=Os01t0258700-01
Chr01	irgsp1_rep	mRNA	8659466	8664774	.	-	.	ID=Os01t0258700-03;Name=Os01t0258700-03;Locus_id=Os01g0258700;CGSNL Gene Symbol=C3H6;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsC3H6;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 6%2C Zinc finger CCCH domain-containing protein ZFN-like 1;Note=Similar to zinc finger CCCH type domain-containing protein ZFN-like 1.;Transcript_evidence=AK111633 (DDBJ%2C Best hit);ORF_evidence=Q5NAW2 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=J013116H24;Oryzabase=8626;Expression=AK111633;TENOR=Os01t0258700-03;KEGG=Os01t0258700-03
Chr01	irgsp1_rep	five_prime_UTR	8664444	8664774	.	-	.	Parent=Os01t0258700-03
Chr01	irgsp1_rep	CDS	8664204	8664443	.	-	0	Parent=Os01t0258700-03
Chr01	irgsp1_rep	CDS	8663142	8663210	.	-	0	Parent=Os01t0258700-03
Chr01	irgsp1_rep	CDS	8662781	8662897	.	-	0	Parent=Os01t0258700-03
Chr01	irgsp1_rep	CDS	8662416	8662694	.	-	0	Parent=Os01t0258700-03
Chr01	irgsp1_rep	CDS	8661730	8662050	.	-	0	Parent=Os01t0258700-03
Chr01	irgsp1_rep	CDS	8660091	8660459	.	-	0	Parent=Os01t0258700-03
Chr01	irgsp1_rep	three_prime_UTR	8660041	8660090	.	-	.	Parent=Os01t0258700-03
Chr01	irgsp1_rep	three_prime_UTR	8659466	8659946	.	-	.	Parent=Os01t0258700-03
Chr01	irgsp1_rep	mRNA	8683011	8687579	.	+	.	ID=Os01t0259200-01;Name=Os01t0259200-01;Locus_id=Os01g0259200;CGSNL Gene Symbol=RLCK28;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 28;Oryzabase Gene Symbol Synonym(s)=OsRLCK28;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 28;Note=Similar to serine/threonine protein kinase PBS1.;Transcript_evidence=AK067283 (DDBJ%2C Best hit);ORF_evidence=XP_002312759.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013100E20;Oryzabase=18747;Expression=AK067283;TENOR=Os01t0259200-01;KEGG=Os01t0259200-01
Chr01	irgsp1_rep	five_prime_UTR	8683011	8683997	.	+	.	Parent=Os01t0259200-01
Chr01	irgsp1_rep	CDS	8683998	8684222	.	+	0	Parent=Os01t0259200-01
Chr01	irgsp1_rep	CDS	8684468	8684657	.	+	0	Parent=Os01t0259200-01
Chr01	irgsp1_rep	CDS	8685619	8686010	.	+	2	Parent=Os01t0259200-01
Chr01	irgsp1_rep	CDS	8686610	8687098	.	+	0	Parent=Os01t0259200-01
Chr01	irgsp1_rep	three_prime_UTR	8687099	8687579	.	+	.	Parent=Os01t0259200-01
Chr01	irgsp1_rep	mRNA	8683097	8687536	.	+	.	ID=Os01t0259200-02;Name=Os01t0259200-02;Locus_id=Os01g0259200;CGSNL Gene Symbol=RLCK28;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 28;Oryzabase Gene Symbol Synonym(s)=OsRLCK28;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 28;Note=Similar to Protein kinase.;Transcript_evidence=AK072073 (DDBJ%2C Best hit);ORF_evidence=B7EDA1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013116M01;Oryzabase=18747;Expression=AK072073;TENOR=Os01t0259200-02;KEGG=Os01t0259200-02
Chr01	irgsp1_rep	five_prime_UTR	8683097	8683249	.	+	.	Parent=Os01t0259200-02
Chr01	irgsp1_rep	CDS	8683250	8683337	.	+	0	Parent=Os01t0259200-02
Chr01	irgsp1_rep	CDS	8684014	8684222	.	+	2	Parent=Os01t0259200-02
Chr01	irgsp1_rep	CDS	8684468	8684657	.	+	0	Parent=Os01t0259200-02
Chr01	irgsp1_rep	CDS	8685619	8686010	.	+	2	Parent=Os01t0259200-02
Chr01	irgsp1_rep	CDS	8686610	8687098	.	+	0	Parent=Os01t0259200-02
Chr01	irgsp1_rep	three_prime_UTR	8687099	8687536	.	+	.	Parent=Os01t0259200-02
Chr01	irgsp1_rep	mRNA	8689258	8689797	.	-	.	ID=Os01t0259300-01;Name=Os01t0259300-01;Locus_id=Os01g0259300;Note=Non-protein coding transcript.;Transcript_evidence=AK105158 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-104-A05;TENOR=Os01t0259300-01
Chr01	irgsp1_rep	exon	8689258	8689797	.	-	.	Parent=Os01t0259300-01
Chr01	irgsp1_rep	mRNA	8691829	8699628	.	-	.	ID=Os01t0259400-01;Name=Os01t0259400-01;Locus_id=Os01g0259400;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=AK102537 (DDBJ%2C Best hit);ORF_evidence=XP_002873912.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033096I22;Expression=AK102537;TENOR=Os01t0259400-01;KEGG=Os01t0259400-01
Chr01	irgsp1_rep	five_prime_UTR	8699459	8699628	.	-	.	Parent=Os01t0259400-01
Chr01	irgsp1_rep	CDS	8699411	8699458	.	-	0	Parent=Os01t0259400-01
Chr01	irgsp1_rep	CDS	8699181	8699270	.	-	0	Parent=Os01t0259400-01
Chr01	irgsp1_rep	CDS	8698367	8698419	.	-	0	Parent=Os01t0259400-01
Chr01	irgsp1_rep	CDS	8698129	8698204	.	-	1	Parent=Os01t0259400-01
Chr01	irgsp1_rep	CDS	8697494	8697555	.	-	0	Parent=Os01t0259400-01
Chr01	irgsp1_rep	CDS	8697336	8697414	.	-	1	Parent=Os01t0259400-01
Chr01	irgsp1_rep	CDS	8697199	8697258	.	-	0	Parent=Os01t0259400-01
Chr01	irgsp1_rep	CDS	8695522	8697105	.	-	0	Parent=Os01t0259400-01
Chr01	irgsp1_rep	CDS	8693640	8694509	.	-	0	Parent=Os01t0259400-01
Chr01	irgsp1_rep	CDS	8692312	8693430	.	-	0	Parent=Os01t0259400-01
Chr01	irgsp1_rep	three_prime_UTR	8691829	8692311	.	-	.	Parent=Os01t0259400-01
Chr01	irgsp1_rep	mRNA	8701299	8708612	.	-	.	ID=Os01t0259600-01;Name=Os01t0259600-01;Locus_id=Os01g0259600;Note=Similar to phosphoadenosine phosphosulfate (PAPS) reductase family protein.;Transcript_evidence=AK066193 (DDBJ%2C Best hit);ORF_evidence=NP_568117.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Phosphoadenosine phosphosulphate reductase (IPR002500),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J013052J22;TENOR=Os01t0259600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	8708324	8708612	.	-	.	Parent=Os01t0259600-01
Chr01	irgsp1_rep	CDS	8708223	8708323	.	-	0	Parent=Os01t0259600-01
Chr01	irgsp1_rep	CDS	8706501	8706546	.	-	1	Parent=Os01t0259600-01
Chr01	irgsp1_rep	CDS	8706231	8706394	.	-	0	Parent=Os01t0259600-01
Chr01	irgsp1_rep	CDS	8706051	8706142	.	-	1	Parent=Os01t0259600-01
Chr01	irgsp1_rep	CDS	8705856	8705881	.	-	2	Parent=Os01t0259600-01
Chr01	irgsp1_rep	three_prime_UTR	8705799	8705855	.	-	.	Parent=Os01t0259600-01
Chr01	irgsp1_rep	three_prime_UTR	8705650	8705709	.	-	.	Parent=Os01t0259600-01
Chr01	irgsp1_rep	three_prime_UTR	8705154	8705384	.	-	.	Parent=Os01t0259600-01
Chr01	irgsp1_rep	three_prime_UTR	8704519	8704615	.	-	.	Parent=Os01t0259600-01
Chr01	irgsp1_rep	three_prime_UTR	8704312	8704362	.	-	.	Parent=Os01t0259600-01
Chr01	irgsp1_rep	three_prime_UTR	8704154	8704234	.	-	.	Parent=Os01t0259600-01
Chr01	irgsp1_rep	three_prime_UTR	8703559	8703630	.	-	.	Parent=Os01t0259600-01
Chr01	irgsp1_rep	three_prime_UTR	8703386	8703448	.	-	.	Parent=Os01t0259600-01
Chr01	irgsp1_rep	three_prime_UTR	8702886	8703032	.	-	.	Parent=Os01t0259600-01
Chr01	irgsp1_rep	three_prime_UTR	8702287	8702344	.	-	.	Parent=Os01t0259600-01
Chr01	irgsp1_rep	three_prime_UTR	8702148	8702200	.	-	.	Parent=Os01t0259600-01
Chr01	irgsp1_rep	three_prime_UTR	8701299	8701710	.	-	.	Parent=Os01t0259600-01
Chr01	irgsp1_rep	mRNA	8718704	8720961	.	+	.	ID=Os01t0259900-00;Name=Os01t0259900-00;Locus_id=Os01g0259900;Oryzabase Gene Symbol Synonym(s)=SAD1L;Oryzabase Gene Name Synonym(s)=SAD1LIKE;Note=Conserved hypothetical protein.;Transcript_evidence=AK333514 (DDBJ);ORF_evidence=NP_001042641.2 (RefSeq);Oryzabase=18690;TENOR=Os01t0259900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	8718704	8718844	.	+	0	Parent=Os01t0259900-00
Chr01	irgsp1_rep	CDS	8718931	8719015	.	+	0	Parent=Os01t0259900-00
Chr01	irgsp1_rep	CDS	8719632	8719715	.	+	2	Parent=Os01t0259900-00
Chr01	irgsp1_rep	CDS	8719969	8720073	.	+	2	Parent=Os01t0259900-00
Chr01	irgsp1_rep	CDS	8720585	8720898	.	+	2	Parent=Os01t0259900-00
Chr01	irgsp1_rep	three_prime_UTR	8720899	8720961	.	+	.	Parent=Os01t0259900-00
Chr01	irgsp1_rep	mRNA	8722666	8723283	.	+	.	ID=Os01t0259933-00;Name=Os01t0259933-00;Locus_id=Os01g0259933;Note=Non-protein coding transcript.;Transcript_evidence=CT834797 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os01t0259933-00
Chr01	irgsp1_rep	exon	8722666	8723186	.	+	.	Parent=Os01t0259933-00
Chr01	irgsp1_rep	exon	8723193	8723283	.	+	.	Parent=Os01t0259933-00
Chr01	irgsp1_rep	mRNA	8728995	8729512	.	+	.	ID=Os01t0259966-00;Name=Os01t0259966-00;Locus_id=Os01g0259966;Note=Non-protein coding transcript.;Transcript_evidence=CT834873 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os01t0259966-00
Chr01	irgsp1_rep	exon	8728995	8729512	.	+	.	Parent=Os01t0259966-00
Chr01	irgsp1_rep	mRNA	8733343	8734486	.	+	.	ID=Os01t0260000-01;Name=Os01t0260000-01;Locus_id=Os01g0260000;Note=Protein prenyltransferase domain containing protein.;Transcript_evidence=AK108460 (DDBJ%2C Best hit);ORF_evidence=Q5NAR1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-143-D07;Expression=AK108460;TENOR=Os01t0260000-01;KEGG=Os01t0260000-01
Chr01	irgsp1_rep	five_prime_UTR	8733343	8733344	.	+	.	Parent=Os01t0260000-01
Chr01	irgsp1_rep	CDS	8733345	8733938	.	+	0	Parent=Os01t0260000-01
Chr01	irgsp1_rep	three_prime_UTR	8733939	8734486	.	+	.	Parent=Os01t0260000-01
Chr01	irgsp1_rep	mRNA	8734767	8741720	.	-	.	ID=Os01t0260100-01;Name=Os01t0260100-01;Locus_id=Os01g0260100;Note=Similar to Kinesin heavy chain (Fragment).;Transcript_evidence=AK070313 (DDBJ%2C Best hit);ORF_evidence=A2ZRG4 (UniProt);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752);NIAS_FLcDNA=J023049J12;Expression=AK070313;TENOR=Os01t0260100-01;KEGG=Os01t0260100-01
Chr01	irgsp1_rep	five_prime_UTR	8741247	8741720	.	-	.	Parent=Os01t0260100-01
Chr01	irgsp1_rep	five_prime_UTR	8740934	8741119	.	-	.	Parent=Os01t0260100-01
Chr01	irgsp1_rep	five_prime_UTR	8740584	8740670	.	-	.	Parent=Os01t0260100-01
Chr01	irgsp1_rep	CDS	8740364	8740583	.	-	0	Parent=Os01t0260100-01
Chr01	irgsp1_rep	CDS	8740201	8740284	.	-	2	Parent=Os01t0260100-01
Chr01	irgsp1_rep	CDS	8739918	8740082	.	-	2	Parent=Os01t0260100-01
Chr01	irgsp1_rep	CDS	8739693	8739799	.	-	2	Parent=Os01t0260100-01
Chr01	irgsp1_rep	CDS	8739565	8739579	.	-	0	Parent=Os01t0260100-01
Chr01	irgsp1_rep	three_prime_UTR	8739381	8739564	.	-	.	Parent=Os01t0260100-01
Chr01	irgsp1_rep	three_prime_UTR	8738252	8738413	.	-	.	Parent=Os01t0260100-01
Chr01	irgsp1_rep	three_prime_UTR	8737815	8738030	.	-	.	Parent=Os01t0260100-01
Chr01	irgsp1_rep	three_prime_UTR	8737671	8737708	.	-	.	Parent=Os01t0260100-01
Chr01	irgsp1_rep	three_prime_UTR	8737430	8737557	.	-	.	Parent=Os01t0260100-01
Chr01	irgsp1_rep	three_prime_UTR	8736013	8737090	.	-	.	Parent=Os01t0260100-01
Chr01	irgsp1_rep	three_prime_UTR	8734767	8735132	.	-	.	Parent=Os01t0260100-01
Chr01	irgsp1_rep	mRNA	8747124	8753486	.	+	.	ID=Os01t0260500-01;Name=Os01t0260500-01;Locus_id=Os01g0260500;Note=Hypothetical conserved gene.;Transcript_evidence=AK288376 (DDBJ%2C Best hit);ORF_evidence=NP_001042644.1 (RefSeq);GO=Biological Process: defense response (GO:0006952),Molecular Function: protein binding (GO:0005515),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),Leucine-rich repeat (IPR001611),NB-ARC (IPR002182),Leucine-rich repeat%2C typical subtype (IPR003591);NIAS_FLcDNA=J090026K04;TENOR=Os01t0260500-01;KEGG=Os01t0260500-01
Chr01	irgsp1_rep	five_prime_UTR	8747124	8751152	.	+	.	Parent=Os01t0260500-01
Chr01	irgsp1_rep	CDS	8751153	8753486	.	+	0	Parent=Os01t0260500-01
Chr01	irgsp1_rep	mRNA	8759419	8763457	.	+	.	ID=Os01t0260700-01;Name=Os01t0260700-01;Locus_id=Os01g0260700;Note=Similar to PUR ALPHA-1.;Transcript_evidence=AK243649 (DDBJ%2C Best hit);ORF_evidence=NP_001149869.1 (RefSeq);InterPro=PUR-alpha/beta/gamma%2C DNA/RNA-binding (IPR006628);NIAS_FLcDNA=J100088G19;TENOR=Os01t0260700-01;KEGG=Os01t0260700-01
Chr01	irgsp1_rep	five_prime_UTR	8759419	8759485	.	+	.	Parent=Os01t0260700-01
Chr01	irgsp1_rep	CDS	8759486	8759815	.	+	0	Parent=Os01t0260700-01
Chr01	irgsp1_rep	CDS	8759913	8759960	.	+	0	Parent=Os01t0260700-01
Chr01	irgsp1_rep	CDS	8762512	8762664	.	+	0	Parent=Os01t0260700-01
Chr01	irgsp1_rep	CDS	8762749	8762991	.	+	0	Parent=Os01t0260700-01
Chr01	irgsp1_rep	CDS	8763078	8763230	.	+	0	Parent=Os01t0260700-01
Chr01	irgsp1_rep	three_prime_UTR	8763231	8763457	.	+	.	Parent=Os01t0260700-01
Chr01	irgsp1_rep	mRNA	8767828	8773510	.	+	.	ID=Os01t0260800-01;Name=Os01t0260800-01;Locus_id=Os01g0260800;Note=Conserved hypothetical protein.;Transcript_evidence=AK071445 (DDBJ%2C Best hit);ORF_evidence=A2WN37 (UniProt);NIAS_FLcDNA=J023096E14;Expression=AK071445;TENOR=Os01t0260800-01;KEGG=Os01t0260800-01
Chr01	irgsp1_rep	five_prime_UTR	8767828	8767967	.	+	.	Parent=Os01t0260800-01
Chr01	irgsp1_rep	five_prime_UTR	8770692	8770873	.	+	.	Parent=Os01t0260800-01
Chr01	irgsp1_rep	CDS	8770874	8770952	.	+	0	Parent=Os01t0260800-01
Chr01	irgsp1_rep	CDS	8771201	8771244	.	+	2	Parent=Os01t0260800-01
Chr01	irgsp1_rep	CDS	8773106	8773267	.	+	0	Parent=Os01t0260800-01
Chr01	irgsp1_rep	three_prime_UTR	8773268	8773510	.	+	.	Parent=Os01t0260800-01
Chr01	irgsp1_rep	mRNA	8783473	8785385	.	+	.	ID=Os01t0260950-00;Name=Os01t0260950-00;Locus_id=Os01g0260950;Note=Conserved hypothetical protein.;Transcript_evidence=AK362776 (DDBJ);ORF_evidence=Q6S5C6 (UniProt);TENOR=Os01t0260950-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	8783473	8783481	.	+	.	Parent=Os01t0260950-00
Chr01	irgsp1_rep	CDS	8783482	8783526	.	+	0	Parent=Os01t0260950-00
Chr01	irgsp1_rep	CDS	8783690	8784025	.	+	0	Parent=Os01t0260950-00
Chr01	irgsp1_rep	three_prime_UTR	8784026	8784389	.	+	.	Parent=Os01t0260950-00
Chr01	irgsp1_rep	three_prime_UTR	8784636	8784860	.	+	.	Parent=Os01t0260950-00
Chr01	irgsp1_rep	three_prime_UTR	8784995	8785385	.	+	.	Parent=Os01t0260950-00
Chr01	irgsp1_rep	mRNA	8786513	8786927	.	-	.	ID=Os01t0261000-01;Name=Os01t0261000-01;Locus_id=Os01g0261000;Note=Hypothetical gene.;Transcript_evidence=AK062597 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-102-E02;Expression=AK062597;TENOR=Os01t0261000-01;KEGG=Os01t0261000-01
Chr01	irgsp1_rep	CDS	8786592	8786927	.	-	0	Parent=Os01t0261000-01
Chr01	irgsp1_rep	three_prime_UTR	8786513	8786591	.	-	.	Parent=Os01t0261000-01
Chr01	irgsp1_rep	mRNA	8786623	8792221	.	+	.	ID=Os01t0261100-01;Name=Os01t0261100-01;Locus_id=Os01g0261100;Oryzabase Gene Symbol Synonym(s)=OsRFP;Oryzabase Gene Name Synonym(s)=RING finger protein;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=AK102361 (DDBJ%2C Best hit);ORF_evidence=B6SSM5 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J033091I10;Oryzabase=21147;Expression=AK102361;TENOR=Os01t0261100-01;KEGG=Os01t0261100-01
Chr01	irgsp1_rep	five_prime_UTR	8786623	8786918	.	+	.	Parent=Os01t0261100-01
Chr01	irgsp1_rep	five_prime_UTR	8788286	8788389	.	+	.	Parent=Os01t0261100-01
Chr01	irgsp1_rep	CDS	8788390	8788720	.	+	0	Parent=Os01t0261100-01
Chr01	irgsp1_rep	CDS	8790527	8790561	.	+	2	Parent=Os01t0261100-01
Chr01	irgsp1_rep	CDS	8790687	8791616	.	+	0	Parent=Os01t0261100-01
Chr01	irgsp1_rep	three_prime_UTR	8791617	8791639	.	+	.	Parent=Os01t0261100-01
Chr01	irgsp1_rep	three_prime_UTR	8791810	8792221	.	+	.	Parent=Os01t0261100-01
Chr01	irgsp1_rep	mRNA	8792650	8797358	.	-	.	ID=Os01t0261200-01;Name=Os01t0261200-01;Locus_id=Os01g0261200;RAP-DB Gene Symbol Synonym(s)=OsNTL3;CGSNL Gene Symbol=NAC8;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 8;Oryzabase Gene Symbol Synonym(s)=OsNAC8%2C ONAC074%2C ONAC74%2C NAC74%2C OsNAC8/ONAC074%2C OsNTL3%2C NTL3;Oryzabase Gene Name Synonym(s)=OsNAC8 protein%2C NAC domain-containing protein 8%2C NAC domain-containing protein 074%2C NAC domain-containing protein 74%2C NAC membrane-bound transcription factor 3%2C NAC MTF3;Note=NAC transcription factor%2C Heat stress tolerance;Transcript_evidence=AK102808;ORF_evidence=Q7GCL7;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=NAC domain superfamily (IPR036093),NAC domain (IPR003441);NIAS_FLcDNA=J033108J08;Manual Curation=November 18%2C 2019;Literature_PMID=31733092,10660065;Oryzabase=6235;Expression=AK102808;TENOR=Os01t0261200-01;KEGG=Os01t0261200-01;Subcellular location=plasma membrane (GO:0005886), nucleus (GO:0005634) [heat stress]
Chr01	irgsp1_rep	five_prime_UTR	8797117	8797358	.	-	.	Parent=Os01t0261200-01
Chr01	irgsp1_rep	five_prime_UTR	8796164	8796172	.	-	.	Parent=Os01t0261200-01
Chr01	irgsp1_rep	CDS	8795998	8796163	.	-	0	Parent=Os01t0261200-01
Chr01	irgsp1_rep	CDS	8795341	8795618	.	-	2	Parent=Os01t0261200-01
Chr01	irgsp1_rep	CDS	8794537	8794890	.	-	0	Parent=Os01t0261200-01
Chr01	irgsp1_rep	CDS	8792925	8793596	.	-	0	Parent=Os01t0261200-01
Chr01	irgsp1_rep	three_prime_UTR	8792650	8792924	.	-	.	Parent=Os01t0261200-01
Chr01	irgsp1_rep	mRNA	8792649	8794891	.	-	.	ID=Os01t0261200-02;Name=Os01t0261200-02;Locus_id=Os01g0261200;CGSNL Gene Symbol=NAC8;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 8;Oryzabase Gene Symbol Synonym(s)=OsNAC8%2C ONAC074%2C ONAC74%2C NAC74%2C OsNAC8/ONAC074%2C OsNTL3%2C NTL3;Oryzabase Gene Name Synonym(s)=OsNAC8 protein%2C NAC domain-containing protein 8%2C NAC domain-containing protein 074%2C NAC domain-containing protein 74%2C NAC membrane-bound transcription factor 3%2C NAC MTF3;Note=Similar to NAC domain-containing protein 74.;Transcript_evidence=AK062259 (DDBJ%2C Best hit);ORF_evidence=Q7GCL7 (UniProt);NIAS_FLcDNA=001-047-G11;Oryzabase=6235;Expression=AK062259;TENOR=Os01t0261200-02;KEGG=Os01t0261200-02
Chr01	irgsp1_rep	five_prime_UTR	8794891	8794891	.	-	.	Parent=Os01t0261200-02
Chr01	irgsp1_rep	CDS	8794537	8794890	.	-	0	Parent=Os01t0261200-02
Chr01	irgsp1_rep	CDS	8792925	8793596	.	-	0	Parent=Os01t0261200-02
Chr01	irgsp1_rep	three_prime_UTR	8792649	8792924	.	-	.	Parent=Os01t0261200-02
Chr01	irgsp1_rep	mRNA	8809389	8813008	.	+	.	ID=Os01t0261500-01;Name=Os01t0261500-01;Locus_id=Os01g0261500;Note=Similar to Nucleoside-diphosphate-sugar epimerase.;Transcript_evidence=AK101899 (DDBJ%2C Best hit);ORF_evidence=B4F8E5 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033071B09;TENOR=Os01t0261500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	8809389	8809543	.	+	.	Parent=Os01t0261500-01
Chr01	irgsp1_rep	CDS	8809544	8809695	.	+	0	Parent=Os01t0261500-01
Chr01	irgsp1_rep	CDS	8809818	8809910	.	+	1	Parent=Os01t0261500-01
Chr01	irgsp1_rep	CDS	8810302	8810380	.	+	1	Parent=Os01t0261500-01
Chr01	irgsp1_rep	CDS	8810477	8810647	.	+	0	Parent=Os01t0261500-01
Chr01	irgsp1_rep	three_prime_UTR	8810648	8812038	.	+	.	Parent=Os01t0261500-01
Chr01	irgsp1_rep	three_prime_UTR	8812596	8813008	.	+	.	Parent=Os01t0261500-01
Chr01	irgsp1_rep	mRNA	8810826	8812972	.	+	.	ID=Os01t0261500-02;Name=Os01t0261500-02;Locus_id=Os01g0261500;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK072194 (DDBJ%2C Best hit);ORF_evidence=B9EV27 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013155I21;Expression=AK072194;TENOR=Os01t0261500-02;KEGG=Os01t0261500-02
Chr01	irgsp1_rep	five_prime_UTR	8810826	8811072	.	+	.	Parent=Os01t0261500-02
Chr01	irgsp1_rep	five_prime_UTR	8811338	8811796	.	+	.	Parent=Os01t0261500-02
Chr01	irgsp1_rep	CDS	8811797	8812038	.	+	0	Parent=Os01t0261500-02
Chr01	irgsp1_rep	CDS	8812596	8812881	.	+	1	Parent=Os01t0261500-02
Chr01	irgsp1_rep	three_prime_UTR	8812882	8812972	.	+	.	Parent=Os01t0261500-02
Chr01	irgsp1_rep	mRNA	8811515	8813014	.	+	.	ID=Os01t0261500-03;Name=Os01t0261500-03;Locus_id=Os01g0261500;Note=Similar to Nucleoside-diphosphate-sugar epimerase.;Transcript_evidence=AK063838 (DDBJ%2C Best hit);ORF_evidence=B4F8E5 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-122-B10;Expression=AK063838;TENOR=Os01t0261500-03;KEGG=Os01t0261500-03
Chr01	irgsp1_rep	five_prime_UTR	8811515	8811515	.	+	.	Parent=Os01t0261500-03
Chr01	irgsp1_rep	CDS	8811516	8811589	.	+	0	Parent=Os01t0261500-03
Chr01	irgsp1_rep	CDS	8811901	8812038	.	+	1	Parent=Os01t0261500-03
Chr01	irgsp1_rep	CDS	8812596	8812881	.	+	1	Parent=Os01t0261500-03
Chr01	irgsp1_rep	three_prime_UTR	8812882	8813014	.	+	.	Parent=Os01t0261500-03
Chr01	irgsp1_rep	mRNA	8816863	8818318	.	-	.	ID=Os01t0261600-00;Name=Os01t0261600-00;Locus_id=Os01g0261600;Note=Similar to agmatine coumaroyltransferase.;Transcript_evidence=EU957504 (DDBJ);ORF_evidence=B6SJ46 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os01t0261600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	8816930	8818318	.	-	0	Parent=Os01t0261600-00
Chr01	irgsp1_rep	three_prime_UTR	8816863	8816929	.	-	.	Parent=Os01t0261600-00
Chr01	irgsp1_rep	mRNA	8821136	8822609	.	-	.	ID=Os01t0261700-01;Name=Os01t0261700-01;Locus_id=Os01g0261700;Note=Similar to Agmatine coumaroyltransferase.;Transcript_evidence=AK100325 (DDBJ%2C Best hit);ORF_evidence=B6SJ46 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J023079J09;TENOR=Os01t0261700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	8822548	8822609	.	-	.	Parent=Os01t0261700-01
Chr01	irgsp1_rep	CDS	8822051	8822547	.	-	0	Parent=Os01t0261700-01
Chr01	irgsp1_rep	CDS	8821909	8821957	.	-	1	Parent=Os01t0261700-01
Chr01	irgsp1_rep	CDS	8821427	8821465	.	-	0	Parent=Os01t0261700-01
Chr01	irgsp1_rep	three_prime_UTR	8821136	8821426	.	-	.	Parent=Os01t0261700-01
Chr01	irgsp1_rep	mRNA	8835574	8837029	.	+	.	ID=Os01t0262000-00;Name=Os01t0262000-00;Locus_id=Os01g0262000;Note=Similar to agmatine coumaroyltransferase.;Transcript_evidence=BT033950 (DDBJ);ORF_evidence=B6SJ46 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os01t0262000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	8835574	8836962	.	+	0	Parent=Os01t0262000-00
Chr01	irgsp1_rep	three_prime_UTR	8836963	8837029	.	+	.	Parent=Os01t0262000-00
Chr01	irgsp1_rep	mRNA	8856489	8857022	.	-	.	ID=Os01t0262401-00;Name=Os01t0262401-00;Locus_id=Os01g0262401;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5NBC0 (UniProt);TENOR=Os01t0262401-00;KEGG=Os01t0262401-00
Chr01	irgsp1_rep	CDS	8856489	8857022	.	-	0	Parent=Os01t0262401-00
Chr01	irgsp1_rep	mRNA	8883493	8885388	.	+	.	ID=Os01t0262500-01;Name=Os01t0262500-01;Locus_id=Os01g0262500;Note=TRAM/LAG1/CLN8 homology domain domain containing protein.;Transcript_evidence=AK071545 (DDBJ%2C Best hit);ORF_evidence=B8AC59 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=TRAM/LAG1/CLN8 homology domain (IPR006634);NIAS_FLcDNA=J023099M14;TENOR=Os01t0262500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	8883493	8883687	.	+	0	Parent=Os01t0262500-01
Chr01	irgsp1_rep	CDS	8883793	8883933	.	+	0	Parent=Os01t0262500-01
Chr01	irgsp1_rep	CDS	8884024	8884143	.	+	0	Parent=Os01t0262500-01
Chr01	irgsp1_rep	CDS	8884789	8884884	.	+	0	Parent=Os01t0262500-01
Chr01	irgsp1_rep	CDS	8885076	8885189	.	+	0	Parent=Os01t0262500-01
Chr01	irgsp1_rep	three_prime_UTR	8885190	8885388	.	+	.	Parent=Os01t0262500-01
Chr01	irgsp1_rep	mRNA	8885632	8892462	.	-	.	ID=Os01t0262600-01;Name=Os01t0262600-01;Locus_id=Os01g0262600;RAP-DB Gene Symbol Synonym(s)=OsGT1;RAP-DB Gene Name Synonym(s)=GLYCOSYLTRANSFERASE1;Oryzabase Gene Symbol Synonym(s)=OsGT1;Oryzabase Gene Name Synonym(s)=GLYCOSYLTRANSFERASE1;Note=Glycosyltransferase%2C Pollen wall formation;Transcript_evidence=NM_001049188;ORF_evidence=G5NBB8;GO=Biological Process: biosynthetic process (GO:0009058);InterPro=Glycosyl transferase%2C family 1 (IPR001296);Manual Curation=April 24%2C 2014;Literature_PMID=23263792;Oryzabase=11690;TENOR=Os01t0262600-01
Chr01	irgsp1_rep	five_prime_UTR	8891970	8892462	.	-	.	Parent=Os01t0262600-01
Chr01	irgsp1_rep	five_prime_UTR	8891445	8891488	.	-	.	Parent=Os01t0262600-01
Chr01	irgsp1_rep	CDS	8891150	8891444	.	-	0	Parent=Os01t0262600-01
Chr01	irgsp1_rep	CDS	8890593	8890735	.	-	2	Parent=Os01t0262600-01
Chr01	irgsp1_rep	CDS	8889194	8889465	.	-	0	Parent=Os01t0262600-01
Chr01	irgsp1_rep	CDS	8888728	8888882	.	-	1	Parent=Os01t0262600-01
Chr01	irgsp1_rep	CDS	8888365	8888627	.	-	2	Parent=Os01t0262600-01
Chr01	irgsp1_rep	CDS	8887088	8887150	.	-	0	Parent=Os01t0262600-01
Chr01	irgsp1_rep	CDS	8885760	8886017	.	-	0	Parent=Os01t0262600-01
Chr01	irgsp1_rep	three_prime_UTR	8885632	8885759	.	-	.	Parent=Os01t0262600-01
Chr01	irgsp1_rep	mRNA	8892598	8898652	.	+	.	ID=Os01t0262700-01;Name=Os01t0262700-01;Locus_id=Os01g0262700;Note=Similar to predicted protein.;Transcript_evidence=AK119928 (DDBJ%2C Best hit);ORF_evidence=B9EV32 (UniProt);NIAS_FLcDNA=002-184-A02;Expression=AK119928;TENOR=Os01t0262700-01;KEGG=Os01t0262700-01
Chr01	irgsp1_rep	five_prime_UTR	8892598	8893185	.	+	.	Parent=Os01t0262700-01
Chr01	irgsp1_rep	CDS	8893186	8893249	.	+	0	Parent=Os01t0262700-01
Chr01	irgsp1_rep	CDS	8893772	8893875	.	+	2	Parent=Os01t0262700-01
Chr01	irgsp1_rep	CDS	8893973	8894011	.	+	0	Parent=Os01t0262700-01
Chr01	irgsp1_rep	CDS	8894137	8894199	.	+	0	Parent=Os01t0262700-01
Chr01	irgsp1_rep	CDS	8894656	8894730	.	+	0	Parent=Os01t0262700-01
Chr01	irgsp1_rep	CDS	8895748	8895813	.	+	0	Parent=Os01t0262700-01
Chr01	irgsp1_rep	CDS	8895917	8895959	.	+	0	Parent=Os01t0262700-01
Chr01	irgsp1_rep	CDS	8896102	8896150	.	+	2	Parent=Os01t0262700-01
Chr01	irgsp1_rep	CDS	8896899	8896992	.	+	1	Parent=Os01t0262700-01
Chr01	irgsp1_rep	CDS	8897078	8897130	.	+	0	Parent=Os01t0262700-01
Chr01	irgsp1_rep	CDS	8897921	8898005	.	+	1	Parent=Os01t0262700-01
Chr01	irgsp1_rep	CDS	8898242	8898344	.	+	0	Parent=Os01t0262700-01
Chr01	irgsp1_rep	CDS	8898421	8898548	.	+	2	Parent=Os01t0262700-01
Chr01	irgsp1_rep	three_prime_UTR	8898549	8898652	.	+	.	Parent=Os01t0262700-01
Chr01	irgsp1_rep	mRNA	8892615	8900134	.	+	.	ID=Os01t0262700-02;Name=Os01t0262700-02;Locus_id=Os01g0262700;Note=Hypothetical conserved gene.;Transcript_evidence=AK100901 (DDBJ%2C Best hit);ORF_evidence=B8AC60 (UniProt);NIAS_FLcDNA=J023131I24;Expression=AK100901;TENOR=Os01t0262700-02;KEGG=Os01t0262700-02
Chr01	irgsp1_rep	five_prime_UTR	8892615	8893185	.	+	.	Parent=Os01t0262700-02
Chr01	irgsp1_rep	CDS	8893186	8893249	.	+	0	Parent=Os01t0262700-02
Chr01	irgsp1_rep	CDS	8893772	8893875	.	+	2	Parent=Os01t0262700-02
Chr01	irgsp1_rep	CDS	8893973	8894011	.	+	0	Parent=Os01t0262700-02
Chr01	irgsp1_rep	CDS	8894137	8894199	.	+	0	Parent=Os01t0262700-02
Chr01	irgsp1_rep	CDS	8894656	8894730	.	+	0	Parent=Os01t0262700-02
Chr01	irgsp1_rep	CDS	8895748	8895825	.	+	0	Parent=Os01t0262700-02
Chr01	irgsp1_rep	three_prime_UTR	8895826	8895959	.	+	.	Parent=Os01t0262700-02
Chr01	irgsp1_rep	three_prime_UTR	8896102	8896150	.	+	.	Parent=Os01t0262700-02
Chr01	irgsp1_rep	three_prime_UTR	8896899	8896992	.	+	.	Parent=Os01t0262700-02
Chr01	irgsp1_rep	three_prime_UTR	8897078	8897130	.	+	.	Parent=Os01t0262700-02
Chr01	irgsp1_rep	three_prime_UTR	8897921	8898005	.	+	.	Parent=Os01t0262700-02
Chr01	irgsp1_rep	three_prime_UTR	8898242	8898344	.	+	.	Parent=Os01t0262700-02
Chr01	irgsp1_rep	three_prime_UTR	8898421	8898513	.	+	.	Parent=Os01t0262700-02
Chr01	irgsp1_rep	three_prime_UTR	8899309	8899375	.	+	.	Parent=Os01t0262700-02
Chr01	irgsp1_rep	three_prime_UTR	8899463	8899516	.	+	.	Parent=Os01t0262700-02
Chr01	irgsp1_rep	three_prime_UTR	8899632	8900134	.	+	.	Parent=Os01t0262700-02
Chr01	irgsp1_rep	mRNA	8903598	8905415	.	-	.	ID=Os01t0263000-00;Name=Os01t0263000-00;Locus_id=Os01g0263000;Oryzabase Gene Symbol Synonym(s)=prx5;Oryzabase Gene Name Synonym(s)=class III peroxidase 5;Note=Similar to Peroxidase.;Transcript_evidence=AK371467 (DDBJ);ORF_evidence=Q94IQ0 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);Oryzabase=14534;TENOR=Os01t0263000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	8905389	8905415	.	-	.	Parent=Os01t0263000-00
Chr01	irgsp1_rep	CDS	8905125	8905388	.	-	0	Parent=Os01t0263000-00
Chr01	irgsp1_rep	CDS	8904805	8904996	.	-	0	Parent=Os01t0263000-00
Chr01	irgsp1_rep	CDS	8904390	8904555	.	-	0	Parent=Os01t0263000-00
Chr01	irgsp1_rep	CDS	8903598	8904019	.	-	2	Parent=Os01t0263000-00
Chr01	irgsp1_rep	mRNA	8917756	8919968	.	+	.	ID=Os01t0263300-01;Name=Os01t0263300-01;Locus_id=Os01g0263300;CGSNL Gene Symbol=ATP6;CGSNL Gene Name=ATPASE SUBUNIT 6;Oryzabase Gene Symbol Synonym(s)=atp6%2C OsPOX1%2C prx3%2C POX1;Oryzabase Gene Name Synonym(s)=peroxidase 1%2C class III peroxidase 3;Note=Similar to Peroxidase 72 precursor (EC 1.11.1.7) (Atperox P72) (PRXR8) (ATP6a).;Transcript_evidence=AK061583 (DDBJ%2C Best hit),AK102117 (DDBJ%2C Best hit),AK243051 (DDBJ%2C Best hit);ORF_evidence=A7J0U4 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=006-312-A08,J033084K24,J100012I18;Oryzabase=8410;TENOR=Os01t0263300-01
Chr01	irgsp1_rep	five_prime_UTR	8917756	8917862	.	+	.	Parent=Os01t0263300-01
Chr01	irgsp1_rep	CDS	8917863	8918090	.	+	0	Parent=Os01t0263300-01
Chr01	irgsp1_rep	CDS	8918745	8918936	.	+	0	Parent=Os01t0263300-01
Chr01	irgsp1_rep	CDS	8919115	8919280	.	+	0	Parent=Os01t0263300-01
Chr01	irgsp1_rep	CDS	8919373	8919794	.	+	2	Parent=Os01t0263300-01
Chr01	irgsp1_rep	three_prime_UTR	8919795	8919968	.	+	.	Parent=Os01t0263300-01
Chr01	irgsp1_rep	mRNA	8921590	8924862	.	-	.	ID=Os01t0263400-00;Name=Os01t0263400-00;Locus_id=Os01g0263400;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5NBA9 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os01t0263400-00
Chr01	irgsp1_rep	CDS	8921590	8924862	.	-	0	Parent=Os01t0263400-00
Chr01	irgsp1_rep	mRNA	8925072	8929646	.	+	.	ID=Os01t0263500-01;Name=Os01t0263500-01;Locus_id=Os01g0263500;Oryzabase Gene Symbol Synonym(s)=OsMed3_1%2C Med3_1;Oryzabase Gene Name Synonym(s)=Mediator 3_1;Note=Similar to predicted protein.;Transcript_evidence=AK289255 (DDBJ%2C Best hit);ORF_evidence=E4MWX3 (UniProt);InterPro=Mediator complex%2C subunit Med27 (IPR021627);NIAS_FLcDNA=J100082L02;Oryzabase=20986;TENOR=Os01t0263500-01;KEGG=Os01t0263500-01
Chr01	irgsp1_rep	five_prime_UTR	8925072	8925079	.	+	.	Parent=Os01t0263500-01
Chr01	irgsp1_rep	CDS	8925080	8925408	.	+	0	Parent=Os01t0263500-01
Chr01	irgsp1_rep	CDS	8927182	8927343	.	+	1	Parent=Os01t0263500-01
Chr01	irgsp1_rep	CDS	8928135	8928585	.	+	1	Parent=Os01t0263500-01
Chr01	irgsp1_rep	CDS	8928682	8928741	.	+	0	Parent=Os01t0263500-01
Chr01	irgsp1_rep	CDS	8928832	8928900	.	+	0	Parent=Os01t0263500-01
Chr01	irgsp1_rep	CDS	8929067	8929110	.	+	0	Parent=Os01t0263500-01
Chr01	irgsp1_rep	CDS	8929211	8929355	.	+	1	Parent=Os01t0263500-01
Chr01	irgsp1_rep	three_prime_UTR	8929356	8929646	.	+	.	Parent=Os01t0263500-01
Chr01	irgsp1_rep	mRNA	8931299	8948832	.	+	.	ID=Os01t0263600-01;Name=Os01t0263600-01;Locus_id=Os01g0263600;Oryzabase Gene Symbol Synonym(s)=Du1L;Oryzabase Gene Name Synonym(s)=Du1-like;Note=U5 snRNP-associated 102 kDa protein (U5-102 kDa protein).;Transcript_evidence=AK101040 (DDBJ%2C Best hit);ORF_evidence=A2WN54 (UniProt);GO=Biological Process: nuclear mRNA splicing%2C via spliceosome (GO:0000398),Biological Process: RNA processing (GO:0006396),Cellular Component: intracellular (GO:0005622),Cellular Component: nucleus (GO:0005634),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=RNA-processing protein%2C HAT helix (IPR003107),PRP1 splicing factor%2C N-terminal (IPR010491),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026);NIAS_FLcDNA=J033000O03;Oryzabase=20543;Expression=AK101040;TENOR=Os01t0263600-01;KEGG=Os01t0263600-01
Chr01	irgsp1_rep	five_prime_UTR	8931299	8931592	.	+	.	Parent=Os01t0263600-01
Chr01	irgsp1_rep	CDS	8931593	8933806	.	+	0	Parent=Os01t0263600-01
Chr01	irgsp1_rep	three_prime_UTR	8933807	8934429	.	+	.	Parent=Os01t0263600-01
Chr01	irgsp1_rep	three_prime_UTR	8935384	8935653	.	+	.	Parent=Os01t0263600-01
Chr01	irgsp1_rep	three_prime_UTR	8936399	8936529	.	+	.	Parent=Os01t0263600-01
Chr01	irgsp1_rep	three_prime_UTR	8948334	8948832	.	+	.	Parent=Os01t0263600-01
Chr01	irgsp1_rep	mRNA	8933109	8948825	.	+	.	ID=Os01t0263600-02;Name=Os01t0263600-02;Locus_id=Os01g0263600;Oryzabase Gene Symbol Synonym(s)=Du1L;Oryzabase Gene Name Synonym(s)=Du1-like;Note=Similar to U5 snRNP-associated 102 kDa protein (U5-102 kDa protein).;Transcript_evidence=AK064411 (DDBJ%2C Best hit);ORF_evidence=Q8W3F7 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Cellular Component: intracellular (GO:0005622),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=RNA-processing protein%2C HAT helix (IPR003107),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026);NIAS_FLcDNA=002-110-A07;Oryzabase=20543;Expression=AK064411;TENOR=Os01t0263600-02;KEGG=Os01t0263600-02
Chr01	irgsp1_rep	five_prime_UTR	8933109	8933110	.	+	.	Parent=Os01t0263600-02
Chr01	irgsp1_rep	CDS	8933111	8933806	.	+	0	Parent=Os01t0263600-02
Chr01	irgsp1_rep	three_prime_UTR	8933807	8933816	.	+	.	Parent=Os01t0263600-02
Chr01	irgsp1_rep	three_prime_UTR	8933861	8934429	.	+	.	Parent=Os01t0263600-02
Chr01	irgsp1_rep	three_prime_UTR	8935384	8935591	.	+	.	Parent=Os01t0263600-02
Chr01	irgsp1_rep	three_prime_UTR	8936399	8936529	.	+	.	Parent=Os01t0263600-02
Chr01	irgsp1_rep	three_prime_UTR	8948334	8948825	.	+	.	Parent=Os01t0263600-02
Chr01	irgsp1_rep	mRNA	8949612	8950796	.	+	.	ID=Os01t0263900-00;Name=Os01t0263900-00;Locus_id=Os01g0263900;Note=Hypothetical protein.;Transcript_evidence=EU949860 (DDBJ);ORF_evidence=GeneMark;TENOR=Os01t0263900-00
Chr01	irgsp1_rep	five_prime_UTR	8949612	8949738	.	+	.	Parent=Os01t0263900-00
Chr01	irgsp1_rep	CDS	8949739	8950215	.	+	0	Parent=Os01t0263900-00
Chr01	irgsp1_rep	three_prime_UTR	8950216	8950796	.	+	.	Parent=Os01t0263900-00
Chr01	irgsp1_rep	mRNA	8949337	8951088	.	-	.	ID=Os01t0264000-01;Name=Os01t0264000-01;Locus_id=Os01g0264000;RAP-DB Gene Symbol Synonym(s)=RDD1%2C OsDof%2C OsDof2%2C Dof2%2C OsDof-2;RAP-DB Gene Name Synonym(s)=RICE DOF DAILY FLUCTUATIONS 1%2C Dof-type zinc finger%2C Dof zinc factor 2%2C Dof transcription factor 2;Oryzabase Gene Symbol Synonym(s)=OsDof%2C OsDof2%2C Dof2%2C OsDof-2;Oryzabase Gene Name Synonym(s)=Dof-type zinc finger%2C Dof zinc factor 2%2C Dof transcription factor 2;Note=Dof transcription factor%2C Promotion of nutrient ion uptake and accumulation;Transcript_evidence=AK063318;ORF_evidence=Q5NBA7;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Zinc finger%2C Dof-type (IPR003851);NIAS_FLcDNA=001-113-G11;Manual Curation=February 8%2C 2016;Literature_PMID=26729506,19210638;Oryzabase=9686;TENOR=Os01t0264000-01
Chr01	irgsp1_rep	five_prime_UTR	8951079	8951088	.	-	.	Parent=Os01t0264000-01
Chr01	irgsp1_rep	CDS	8949778	8951078	.	-	0	Parent=Os01t0264000-01
Chr01	irgsp1_rep	CDS	8949557	8949746	.	-	1	Parent=Os01t0264000-01
Chr01	irgsp1_rep	three_prime_UTR	8949337	8949556	.	-	.	Parent=Os01t0264000-01
Chr01	irgsp1_rep	mRNA	8961073	8966217	.	+	.	ID=Os01t0264100-00;Name=Os01t0264100-00;Locus_id=Os01g0264100;Note=Similar to UDP-glucose pyrophosphorylase.;Transcript_evidence=tplb0010b10 (Wheat FLcDNA);ORF_evidence=Q6Y643 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=UTP--glucose-1-phosphate uridylyltransferase (IPR002618),UTP--glucose-1-phosphate uridylyltransferase%2C subgroup (IPR016267);TENOR=Os01t0264100-00;KEGG=Os01t0264100-00 (EC:2.7.7.9)
Chr01	irgsp1_rep	CDS	8961073	8961314	.	+	0	Parent=Os01t0264100-00
Chr01	irgsp1_rep	CDS	8961736	8961827	.	+	1	Parent=Os01t0264100-00
Chr01	irgsp1_rep	CDS	8961964	8962054	.	+	2	Parent=Os01t0264100-00
Chr01	irgsp1_rep	CDS	8962877	8962937	.	+	1	Parent=Os01t0264100-00
Chr01	irgsp1_rep	CDS	8963026	8963100	.	+	0	Parent=Os01t0264100-00
Chr01	irgsp1_rep	CDS	8963172	8963216	.	+	0	Parent=Os01t0264100-00
Chr01	irgsp1_rep	CDS	8963318	8963391	.	+	0	Parent=Os01t0264100-00
Chr01	irgsp1_rep	CDS	8963565	8963637	.	+	1	Parent=Os01t0264100-00
Chr01	irgsp1_rep	CDS	8964288	8964345	.	+	0	Parent=Os01t0264100-00
Chr01	irgsp1_rep	CDS	8964422	8964468	.	+	2	Parent=Os01t0264100-00
Chr01	irgsp1_rep	CDS	8964545	8964590	.	+	0	Parent=Os01t0264100-00
Chr01	irgsp1_rep	CDS	8964882	8964940	.	+	2	Parent=Os01t0264100-00
Chr01	irgsp1_rep	three_prime_UTR	8964941	8964985	.	+	.	Parent=Os01t0264100-00
Chr01	irgsp1_rep	three_prime_UTR	8965053	8965128	.	+	.	Parent=Os01t0264100-00
Chr01	irgsp1_rep	three_prime_UTR	8965207	8965263	.	+	.	Parent=Os01t0264100-00
Chr01	irgsp1_rep	three_prime_UTR	8965366	8965449	.	+	.	Parent=Os01t0264100-00
Chr01	irgsp1_rep	three_prime_UTR	8965529	8965627	.	+	.	Parent=Os01t0264100-00
Chr01	irgsp1_rep	three_prime_UTR	8965765	8965869	.	+	.	Parent=Os01t0264100-00
Chr01	irgsp1_rep	three_prime_UTR	8966145	8966217	.	+	.	Parent=Os01t0264100-00
Chr01	irgsp1_rep	mRNA	8964284	8965882	.	-	.	ID=Os01t0264125-00;Name=Os01t0264125-00;Locus_id=Os01g0264125;Note=Non-protein coding transcript.;Transcript_evidence=BT016879 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0264125-00
Chr01	irgsp1_rep	exon	8965755	8965882	.	-	.	Parent=Os01t0264125-00
Chr01	irgsp1_rep	exon	8965558	8965613	.	-	.	Parent=Os01t0264125-00
Chr01	irgsp1_rep	exon	8965359	8965473	.	-	.	Parent=Os01t0264125-00
Chr01	irgsp1_rep	exon	8965205	8965256	.	-	.	Parent=Os01t0264125-00
Chr01	irgsp1_rep	exon	8965028	8965122	.	-	.	Parent=Os01t0264125-00
Chr01	irgsp1_rep	exon	8964528	8964673	.	-	.	Parent=Os01t0264125-00
Chr01	irgsp1_rep	exon	8964284	8964369	.	-	.	Parent=Os01t0264125-00
Chr01	irgsp1_rep	mRNA	8986253	8987397	.	+	.	ID=Os01t0264400-01;Name=Os01t0264400-01;Locus_id=Os01g0264400;Note=Conserved hypothetical protein.;Transcript_evidence=AK107988 (DDBJ%2C Best hit);ORF_evidence=A2WN59 (UniProt);NIAS_FLcDNA=002-135-F03;Expression=AK107988;TENOR=Os01t0264400-01;KEGG=Os01t0264400-01
Chr01	irgsp1_rep	five_prime_UTR	8986253	8986377	.	+	.	Parent=Os01t0264400-01
Chr01	irgsp1_rep	CDS	8986378	8986510	.	+	0	Parent=Os01t0264400-01
Chr01	irgsp1_rep	CDS	8986638	8986690	.	+	2	Parent=Os01t0264400-01
Chr01	irgsp1_rep	CDS	8986791	8986907	.	+	0	Parent=Os01t0264400-01
Chr01	irgsp1_rep	three_prime_UTR	8986908	8987397	.	+	.	Parent=Os01t0264400-01
Chr01	irgsp1_rep	mRNA	8988911	8992577	.	+	.	ID=Os01t0264500-01;Name=Os01t0264500-01;Locus_id=Os01g0264500;Note=Similar to T11I18.15 protein.;Transcript_evidence=AK062518 (DDBJ%2C Best hit);ORF_evidence=Q9SQQ8 (UniProt);NIAS_FLcDNA=001-104-C10;Expression=AK062518;TENOR=Os01t0264500-01;KEGG=Os01t0264500-01
Chr01	irgsp1_rep	five_prime_UTR	8988911	8988993	.	+	.	Parent=Os01t0264500-01
Chr01	irgsp1_rep	CDS	8988994	8989077	.	+	0	Parent=Os01t0264500-01
Chr01	irgsp1_rep	CDS	8989480	8989530	.	+	0	Parent=Os01t0264500-01
Chr01	irgsp1_rep	CDS	8989821	8989872	.	+	0	Parent=Os01t0264500-01
Chr01	irgsp1_rep	CDS	8990451	8990509	.	+	2	Parent=Os01t0264500-01
Chr01	irgsp1_rep	CDS	8991329	8991374	.	+	0	Parent=Os01t0264500-01
Chr01	irgsp1_rep	CDS	8992152	8992276	.	+	2	Parent=Os01t0264500-01
Chr01	irgsp1_rep	three_prime_UTR	8992277	8992577	.	+	.	Parent=Os01t0264500-01
Chr01	irgsp1_rep	mRNA	8995314	8996892	.	+	.	ID=Os01t0264600-00;Name=Os01t0264600-00;Locus_id=Os01g0264600;Note=Conserved hypothetical protein.;Transcript_evidence=BT086466 (DDBJ);ORF_evidence=NP_001172271.1 (RefSeq);TENOR=Os01t0264600-00;KEGG=Os01t0264600-00
Chr01	irgsp1_rep	five_prime_UTR	8995314	8995314	.	+	.	Parent=Os01t0264600-00
Chr01	irgsp1_rep	CDS	8995315	8996892	.	+	0	Parent=Os01t0264600-00
Chr01	irgsp1_rep	mRNA	9004534	9008221	.	-	.	ID=Os01t0264700-01;Name=Os01t0264700-01;Locus_id=Os01g0264700;Note=Cellular retinaldehyde binding/alpha-tocopherol transport family protein.;Transcript_evidence=AK071712 (DDBJ%2C Best hit);ORF_evidence=XP_002893215.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Cellular Component: intracellular (GO:0005622),Molecular Function: transporter activity (GO:0005215);InterPro=Cellular retinaldehyde binding/alpha-tocopherol transport (IPR001071),Cellular retinaldehyde-binding/triple function%2C C-terminal (IPR001251),Cellular retinaldehyde-binding/triple function%2C N-terminal (IPR008273),Phosphatidylinositol transfer protein-like%2C N-terminal (IPR011074);NIAS_FLcDNA=J023110C13;Expression=AK071712;TENOR=Os01t0264700-01;KEGG=Os01t0264700-01
Chr01	irgsp1_rep	five_prime_UTR	9007900	9008221	.	-	.	Parent=Os01t0264700-01
Chr01	irgsp1_rep	five_prime_UTR	9007165	9007203	.	-	.	Parent=Os01t0264700-01
Chr01	irgsp1_rep	CDS	9007090	9007164	.	-	0	Parent=Os01t0264700-01
Chr01	irgsp1_rep	CDS	9006807	9006986	.	-	0	Parent=Os01t0264700-01
Chr01	irgsp1_rep	CDS	9006207	9006305	.	-	0	Parent=Os01t0264700-01
Chr01	irgsp1_rep	CDS	9005441	9005683	.	-	0	Parent=Os01t0264700-01
Chr01	irgsp1_rep	CDS	9004857	9005182	.	-	0	Parent=Os01t0264700-01
Chr01	irgsp1_rep	CDS	9004799	9004811	.	-	1	Parent=Os01t0264700-01
Chr01	irgsp1_rep	three_prime_UTR	9004534	9004798	.	-	.	Parent=Os01t0264700-01
Chr01	irgsp1_rep	mRNA	9016289	9016581	.	+	.	ID=Os01t0264900-01;Name=Os01t0264900-01;Locus_id=Os01g0264900;Note=Non-protein coding transcript.;Transcript_evidence=AK059509 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-029-B02;TENOR=Os01t0264900-01
Chr01	irgsp1_rep	exon	9016289	9016581	.	+	.	Parent=Os01t0264900-01
Chr01	irgsp1_rep	mRNA	9018144	9019762	.	+	.	ID=Os01t0265000-01;Name=Os01t0265000-01;Locus_id=Os01g0265000;RAP-DB Gene Symbol Synonym(s)=OsGGR2%2C LYL2%2C OsGGRII;RAP-DB Gene Name Synonym(s)=Geranylgeranyl Reductase 2%2C  Light-Induced Yellow Leaf 2%2C Geranylgeranyl Reductase II;CGSNL Gene Symbol=LYL2;CGSNL Gene Name=LIGHT-INDUCED YELLOW LEAF 2;Oryzabase Gene Symbol Synonym(s)=OsGGRII%2C GGRII%2C OsGGR2%2C GGR2;Oryzabase Gene Name Synonym(s)=Light-Induced Yellow Leaf 2%2C Geranylgeranyl Reductase II%2C geranylgeranyl reductase 2;Note=Geranylgeranyl reductase%2C &alpha%3B-tocopherol synthesis;Transcript_evidence=AK366103,Inferred from literature;ORF_evidence=Q5NB98;GO=Biological Process: photosynthesis (GO:0015979),Biological Process: chlorophyll biosynthetic process (GO:0015995),Biological Process: cofactor biosynthetic process (GO:0051188),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on the CH-CH group of donors%2C NAD or NADP as acceptor (GO:0016628),Molecular Function: geranylgeranyl reductase activity (GO:0045550),Molecular Function: FAD binding (GO:0071949);InterPro=FAD/NAD(P)-binding domain superfamily (IPR036188),Geranylgeranyl reductase family (IPR011777),Geranylgeranyl reductase%2C plant/prokaryotic (IPR010253),Geranylgeranyl reductase%2C plant/cyanobacteria (IPR011774),FAD-binding domain (IPR002938);Manual Curation=March 1%2C 2018;Literature_PMID=29382838,24058671;Oryzabase=19621;TENOR=Os01t0265000-00
Chr01	irgsp1_rep	five_prime_UTR	9018144	9018210	.	+	.	Parent=Os01t0265000-01
Chr01	irgsp1_rep	CDS	9018211	9019584	.	+	0	Parent=Os01t0265000-01
Chr01	irgsp1_rep	three_prime_UTR	9019585	9019762	.	+	.	Parent=Os01t0265000-01
Chr01	irgsp1_rep	mRNA	9019849	9024048	.	-	.	ID=Os01t0265100-01;Name=Os01t0265100-01;Locus_id=Os01g0265100;CGSNL Gene Symbol=ARFA1E;CGSNL Gene Name=ADP-RIBOSYLATION FACTOR A1E;Oryzabase Gene Symbol Synonym(s)=OsARFA1e%2C ARFA1e;Oryzabase Gene Name Synonym(s)=ADP-ribosylation factor A1e;Note=Similar to ADP-ribosylation factor.;Transcript_evidence=AK067217 (DDBJ%2C Best hit);ORF_evidence=D7REK4 (UniProt);GO=Biological Process: small GTPase mediated signal transduction (GO:0007264),Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C ARF/SAR type (IPR006689),Small GTPase superfamily%2C ARF type (IPR024156);NIAS_FLcDNA=J013098K24;Oryzabase=21006;Expression=AK067217;TENOR=Os01t0265100-01;KEGG=Os01t0265100-01
Chr01	irgsp1_rep	five_prime_UTR	9024005	9024048	.	-	.	Parent=Os01t0265100-01
Chr01	irgsp1_rep	five_prime_UTR	9022949	9022969	.	-	.	Parent=Os01t0265100-01
Chr01	irgsp1_rep	CDS	9022801	9022948	.	-	0	Parent=Os01t0265100-01
Chr01	irgsp1_rep	CDS	9022313	9022383	.	-	2	Parent=Os01t0265100-01
Chr01	irgsp1_rep	CDS	9021977	9022096	.	-	0	Parent=Os01t0265100-01
Chr01	irgsp1_rep	CDS	9021059	9021177	.	-	0	Parent=Os01t0265100-01
Chr01	irgsp1_rep	CDS	9020525	9020606	.	-	1	Parent=Os01t0265100-01
Chr01	irgsp1_rep	CDS	9020119	9020124	.	-	0	Parent=Os01t0265100-01
Chr01	irgsp1_rep	three_prime_UTR	9019849	9020118	.	-	.	Parent=Os01t0265100-01
Chr01	irgsp1_rep	mRNA	9024970	9028874	.	-	.	ID=Os01t0265200-01;Name=Os01t0265200-01;Locus_id=Os01g0265200;RAP-DB Gene Symbol Synonym(s)=OsPAPST1;RAP-DB Gene Name Synonym(s)=3'-Phosphoadenosine 5'-Phosphosulfate Transporter1;Oryzabase Gene Symbol Synonym(s)=OsPAPST1;Oryzabase Gene Name Synonym(s)=3'-Phosphoadenosine 5'-Phosphosulfate Transporter1;Note=Mitochondrial carrier protein%2C Early leaf development;Transcript_evidence=AK121045;ORF_evidence=Q9LD54;GO=Biological Process: transmembrane transport (GO:0055085);InterPro=Mitochondrial carrier protein (IPR002067),Mitochondrial carrier domain (IPR023395),Mitochondrial substrate/solute carrier (IPR018108);NIAS_FLcDNA=J023053G08;Manual Curation=April 4%2C 2014;Literature_PMID=23411694;Oryzabase=11753;TENOR=Os01t0265200-01;KEGG=Os01t0265200-01
Chr01	irgsp1_rep	five_prime_UTR	9028706	9028874	.	-	.	Parent=Os01t0265200-01
Chr01	irgsp1_rep	CDS	9028352	9028705	.	-	0	Parent=Os01t0265200-01
Chr01	irgsp1_rep	CDS	9028166	9028222	.	-	0	Parent=Os01t0265200-01
Chr01	irgsp1_rep	CDS	9027022	9027084	.	-	0	Parent=Os01t0265200-01
Chr01	irgsp1_rep	CDS	9026867	9026923	.	-	0	Parent=Os01t0265200-01
Chr01	irgsp1_rep	CDS	9026697	9026780	.	-	0	Parent=Os01t0265200-01
Chr01	irgsp1_rep	CDS	9026518	9026586	.	-	0	Parent=Os01t0265200-01
Chr01	irgsp1_rep	CDS	9026339	9026451	.	-	0	Parent=Os01t0265200-01
Chr01	irgsp1_rep	CDS	9026083	9026252	.	-	1	Parent=Os01t0265200-01
Chr01	irgsp1_rep	CDS	9025832	9025910	.	-	2	Parent=Os01t0265200-01
Chr01	irgsp1_rep	CDS	9025609	9025708	.	-	1	Parent=Os01t0265200-01
Chr01	irgsp1_rep	three_prime_UTR	9024970	9025608	.	-	.	Parent=Os01t0265200-01
Chr01	irgsp1_rep	mRNA	9040786	9053950	.	-	.	ID=Os01t0265400-01;Name=Os01t0265400-01;Locus_id=Os01g0265400;Note=Conserved hypothetical protein.;Transcript_evidence=AK120531 (DDBJ%2C Best hit);ORF_evidence=Q10DI9 (UniProt);NIAS_FLcDNA=J013127H23;Expression=AK120531;TENOR=Os01t0265400-01;KEGG=Os01t0265400-01
Chr01	irgsp1_rep	five_prime_UTR	9053480	9053950	.	-	.	Parent=Os01t0265400-01
Chr01	irgsp1_rep	five_prime_UTR	9052715	9052922	.	-	.	Parent=Os01t0265400-01
Chr01	irgsp1_rep	five_prime_UTR	9049835	9051702	.	-	.	Parent=Os01t0265400-01
Chr01	irgsp1_rep	five_prime_UTR	9048629	9048695	.	-	.	Parent=Os01t0265400-01
Chr01	irgsp1_rep	five_prime_UTR	9048406	9048482	.	-	.	Parent=Os01t0265400-01
Chr01	irgsp1_rep	five_prime_UTR	9046283	9048341	.	-	.	Parent=Os01t0265400-01
Chr01	irgsp1_rep	five_prime_UTR	9045999	9046093	.	-	.	Parent=Os01t0265400-01
Chr01	irgsp1_rep	five_prime_UTR	9043746	9043824	.	-	.	Parent=Os01t0265400-01
Chr01	irgsp1_rep	CDS	9043734	9043745	.	-	0	Parent=Os01t0265400-01
Chr01	irgsp1_rep	CDS	9043340	9043431	.	-	0	Parent=Os01t0265400-01
Chr01	irgsp1_rep	CDS	9042139	9042238	.	-	1	Parent=Os01t0265400-01
Chr01	irgsp1_rep	three_prime_UTR	9041677	9042138	.	-	.	Parent=Os01t0265400-01
Chr01	irgsp1_rep	three_prime_UTR	9040786	9041418	.	-	.	Parent=Os01t0265400-01
Chr01	irgsp1_rep	mRNA	9041580	9046083	.	-	.	ID=Os01t0265400-02;Name=Os01t0265400-02;Locus_id=Os01g0265400;Note=Conserved hypothetical protein.;Transcript_evidence=AK102033 (DDBJ%2C Best hit);ORF_evidence=Q10DI9 (UniProt);NIAS_FLcDNA=J033081B10;TENOR=Os01t0265400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	9044737	9046083	.	-	.	Parent=Os01t0265400-02
Chr01	irgsp1_rep	CDS	9044410	9044736	.	-	0	Parent=Os01t0265400-02
Chr01	irgsp1_rep	three_prime_UTR	9043734	9044409	.	-	.	Parent=Os01t0265400-02
Chr01	irgsp1_rep	three_prime_UTR	9043340	9043431	.	-	.	Parent=Os01t0265400-02
Chr01	irgsp1_rep	three_prime_UTR	9041580	9042238	.	-	.	Parent=Os01t0265400-02
Chr01	irgsp1_rep	mRNA	9057858	9061022	.	-	.	ID=Os01t0265700-01;Name=Os01t0265700-01;Locus_id=Os01g0265700;Note=Conserved hypothetical protein.;Transcript_evidence=AK111252 (DDBJ%2C Best hit);ORF_evidence=A2WN70 (UniProt);NIAS_FLcDNA=002-180-E02;Expression=AK111252;TENOR=Os01t0265700-01;KEGG=Os01t0265700-01
Chr01	irgsp1_rep	five_prime_UTR	9060918	9061022	.	-	.	Parent=Os01t0265700-01
Chr01	irgsp1_rep	CDS	9060721	9060917	.	-	0	Parent=Os01t0265700-01
Chr01	irgsp1_rep	CDS	9059826	9059919	.	-	1	Parent=Os01t0265700-01
Chr01	irgsp1_rep	CDS	9059650	9059754	.	-	0	Parent=Os01t0265700-01
Chr01	irgsp1_rep	CDS	9058212	9058541	.	-	0	Parent=Os01t0265700-01
Chr01	irgsp1_rep	three_prime_UTR	9057858	9058211	.	-	.	Parent=Os01t0265700-01
Chr01	irgsp1_rep	mRNA	9063968	9066786	.	-	.	ID=Os01t0265800-01;Name=Os01t0265800-01;Locus_id=Os01g0265800;RAP-DB Gene Symbol Synonym(s)=RBP-P;RAP-DB Gene Name Synonym(s)=RNA binding protein P;CGSNL Gene Symbol=RBP-P;CGSNL Gene Name=RNA-BINDING PROTEIN P;Oryzabase Gene Symbol Synonym(s)=OsRBP-P;Oryzabase Gene Name Synonym(s)=RNA binding protein P;Note=RNA binding protein%2C RNA metabolism%2C Regulation of genes important for plant growth and development;Transcript_evidence=AK099896;ORF_evidence=Q9LJ04;GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Nucleotide-binding alpha-beta plait domain superfamily (IPR012677),RNA-binding domain superfamily (IPR035979),RNA recognition motif domain (IPR000504);NIAS_FLcDNA=J013113M11;Manual Curation=November 13%2C 2018;Literature_PMID=30190374,24682961;Oryzabase=20911;TENOR=Os01t0265800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	9066683	9066786	.	-	.	Parent=Os01t0265800-01
Chr01	irgsp1_rep	CDS	9065210	9066682	.	-	0	Parent=Os01t0265800-01
Chr01	irgsp1_rep	three_prime_UTR	9063968	9064284	.	-	.	Parent=Os01t0265800-01
Chr01	irgsp1_rep	mRNA	9064028	9066738	.	-	.	ID=Os01t0265800-02;Name=Os01t0265800-02;Locus_id=Os01g0265800;CGSNL Gene Symbol=RBP-P;CGSNL Gene Name=RNA-BINDING PROTEIN P;Oryzabase Gene Symbol Synonym(s)=OsRBP-P;Oryzabase Gene Name Synonym(s)=RNA binding protein P;Note=RNA-binding region RNP-1  (RNA recognition motif) domain containing protein.;Transcript_evidence=AK109487 (DDBJ%2C Best hit);ORF_evidence=NP_001149939.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-203-A05;Oryzabase=20911;Expression=AK109487;TENOR=Os01t0265800-02;KEGG=Os01t0265800-02
Chr01	irgsp1_rep	five_prime_UTR	9066683	9066738	.	-	.	Parent=Os01t0265800-02
Chr01	irgsp1_rep	CDS	9065210	9066682	.	-	0	Parent=Os01t0265800-02
Chr01	irgsp1_rep	three_prime_UTR	9064028	9064284	.	-	.	Parent=Os01t0265800-02
Chr01	irgsp1_rep	mRNA	9067828	9071250	.	-	.	ID=Os01t0265900-00;Name=Os01t0265900-00;Locus_id=Os01g0265900;Note=Similar to translin family protein.;Transcript_evidence=tplb0054b23 (Wheat FLcDNA);ORF_evidence=NP_178473.2 (RefSeq);GO=Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Translin (IPR002848),Translin%2C N-terminal (IPR016068),Translin%2C C-terminal (IPR016069);TENOR=Os01t0265900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	9071071	9071250	.	-	.	Parent=Os01t0265900-00
Chr01	irgsp1_rep	CDS	9070972	9071070	.	-	0	Parent=Os01t0265900-00
Chr01	irgsp1_rep	CDS	9070264	9070343	.	-	0	Parent=Os01t0265900-00
Chr01	irgsp1_rep	CDS	9069496	9069637	.	-	1	Parent=Os01t0265900-00
Chr01	irgsp1_rep	CDS	9069265	9069414	.	-	0	Parent=Os01t0265900-00
Chr01	irgsp1_rep	CDS	9068968	9069169	.	-	0	Parent=Os01t0265900-00
Chr01	irgsp1_rep	CDS	9067832	9067935	.	-	2	Parent=Os01t0265900-00
Chr01	irgsp1_rep	three_prime_UTR	9067828	9067831	.	-	.	Parent=Os01t0265900-00
Chr01	irgsp1_rep	mRNA	9074613	9083794	.	+	.	ID=Os01t0266000-01;Name=Os01t0266000-01;Locus_id=Os01g0266000;Note=RNA-binding protein Lupus La domain containing protein.;Transcript_evidence=AK121684 (DDBJ%2C Best hit);ORF_evidence=B9EV42 (UniProt);InterPro=Protein of unknown function DM15 (IPR006607),RNA-binding protein Lupus La (IPR006630),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=J033070C16;Expression=AK121684;TENOR=Os01t0266000-01;KEGG=Os01t0266000-01
Chr01	irgsp1_rep	five_prime_UTR	9074613	9074972	.	+	.	Parent=Os01t0266000-01
Chr01	irgsp1_rep	CDS	9074973	9075281	.	+	0	Parent=Os01t0266000-01
Chr01	irgsp1_rep	CDS	9076440	9076998	.	+	0	Parent=Os01t0266000-01
Chr01	irgsp1_rep	CDS	9077088	9077241	.	+	2	Parent=Os01t0266000-01
Chr01	irgsp1_rep	CDS	9078475	9078565	.	+	1	Parent=Os01t0266000-01
Chr01	irgsp1_rep	CDS	9078722	9078793	.	+	0	Parent=Os01t0266000-01
Chr01	irgsp1_rep	CDS	9078879	9079390	.	+	0	Parent=Os01t0266000-01
Chr01	irgsp1_rep	CDS	9079854	9079923	.	+	1	Parent=Os01t0266000-01
Chr01	irgsp1_rep	CDS	9080514	9080579	.	+	0	Parent=Os01t0266000-01
Chr01	irgsp1_rep	CDS	9081266	9081570	.	+	0	Parent=Os01t0266000-01
Chr01	irgsp1_rep	CDS	9081866	9082006	.	+	1	Parent=Os01t0266000-01
Chr01	irgsp1_rep	CDS	9082141	9082204	.	+	1	Parent=Os01t0266000-01
Chr01	irgsp1_rep	CDS	9082429	9082574	.	+	0	Parent=Os01t0266000-01
Chr01	irgsp1_rep	CDS	9082669	9082773	.	+	1	Parent=Os01t0266000-01
Chr01	irgsp1_rep	CDS	9083310	9083490	.	+	1	Parent=Os01t0266000-01
Chr01	irgsp1_rep	three_prime_UTR	9083491	9083794	.	+	.	Parent=Os01t0266000-01
Chr01	irgsp1_rep	mRNA	9088088	9089013	.	+	.	ID=Os01t0266100-01;Name=Os01t0266100-01;Locus_id=Os01g0266100;Note=Similar to RING finger family protein.;Transcript_evidence=AK063246 (DDBJ%2C Best hit);ORF_evidence=XP_002892849.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=001-112-G10;Expression=AK063246;TENOR=Os01t0266100-01;KEGG=Os01t0266100-01
Chr01	irgsp1_rep	five_prime_UTR	9088088	9088153	.	+	.	Parent=Os01t0266100-01
Chr01	irgsp1_rep	CDS	9088154	9088768	.	+	0	Parent=Os01t0266100-01
Chr01	irgsp1_rep	three_prime_UTR	9088769	9089013	.	+	.	Parent=Os01t0266100-01
Chr01	irgsp1_rep	mRNA	9095173	9099512	.	+	.	ID=Os01t0266200-01;Name=Os01t0266200-01;Locus_id=Os01g0266200;Note=Conserved hypothetical protein.;Transcript_evidence=AK120244 (DDBJ%2C Best hit);ORF_evidence=B8B9I3 (UniProt);NIAS_FLcDNA=J013044I07;TENOR=Os01t0266200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	9095173	9095353	.	+	.	Parent=Os01t0266200-01
Chr01	irgsp1_rep	five_prime_UTR	9096017	9096103	.	+	.	Parent=Os01t0266200-01
Chr01	irgsp1_rep	CDS	9096181	9096340	.	+	0	Parent=Os01t0266200-01
Chr01	irgsp1_rep	CDS	9096545	9096625	.	+	2	Parent=Os01t0266200-01
Chr01	irgsp1_rep	CDS	9096726	9096875	.	+	2	Parent=Os01t0266200-01
Chr01	irgsp1_rep	CDS	9096951	9097004	.	+	2	Parent=Os01t0266200-01
Chr01	irgsp1_rep	CDS	9097094	9097176	.	+	2	Parent=Os01t0266200-01
Chr01	irgsp1_rep	three_prime_UTR	9097177	9097204	.	+	.	Parent=Os01t0266200-01
Chr01	irgsp1_rep	three_prime_UTR	9097302	9098692	.	+	.	Parent=Os01t0266200-01
Chr01	irgsp1_rep	three_prime_UTR	9098797	9099512	.	+	.	Parent=Os01t0266200-01
Chr01	irgsp1_rep	mRNA	9113868	9114423	.	+	.	ID=Os01t0266400-01;Name=Os01t0266400-01;Locus_id=Os01g0266400;Note=Conserved hypothetical protein.;Transcript_evidence=AK121188 (DDBJ%2C Best hit);ORF_evidence=A2WN82 (UniProt);NIAS_FLcDNA=J023085H22;Expression=AK121188;TENOR=Os01t0266400-01;KEGG=Os01t0266400-01
Chr01	irgsp1_rep	five_prime_UTR	9113868	9114001	.	+	.	Parent=Os01t0266400-01
Chr01	irgsp1_rep	CDS	9114002	9114253	.	+	0	Parent=Os01t0266400-01
Chr01	irgsp1_rep	three_prime_UTR	9114254	9114423	.	+	.	Parent=Os01t0266400-01
Chr01	irgsp1_rep	mRNA	9114579	9117424	.	-	.	ID=Os01t0266500-01;Name=Os01t0266500-01;Locus_id=Os01g0266500;Note=Phenazine biosynthesis PhzC/PhzF protein family protein.;Transcript_evidence=AK101084 (DDBJ%2C Best hit);ORF_evidence=B6U0C2 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824);InterPro=Phenazine biosynthesis PhzC/PhzF protein (IPR003719);NIAS_FLcDNA=J033024I08;Expression=AK101084;TENOR=Os01t0266500-01;KEGG=Os01t0266500-01
Chr01	irgsp1_rep	five_prime_UTR	9117345	9117424	.	-	.	Parent=Os01t0266500-01
Chr01	irgsp1_rep	CDS	9117315	9117344	.	-	0	Parent=Os01t0266500-01
Chr01	irgsp1_rep	CDS	9116992	9117216	.	-	0	Parent=Os01t0266500-01
Chr01	irgsp1_rep	CDS	9116584	9116904	.	-	0	Parent=Os01t0266500-01
Chr01	irgsp1_rep	CDS	9115831	9115992	.	-	0	Parent=Os01t0266500-01
Chr01	irgsp1_rep	CDS	9114952	9115035	.	-	0	Parent=Os01t0266500-01
Chr01	irgsp1_rep	CDS	9114728	9114835	.	-	0	Parent=Os01t0266500-01
Chr01	irgsp1_rep	three_prime_UTR	9114579	9114727	.	-	.	Parent=Os01t0266500-01
Chr01	irgsp1_rep	mRNA	9118207	9121411	.	-	.	ID=Os01t0266600-01;Name=Os01t0266600-01;Locus_id=Os01g0266600;CGSNL Gene Symbol=PRXIIF;CGSNL Gene Name=TYPE-II PEROXIREDOXIN F;Oryzabase Gene Symbol Synonym(s)=OsPrxII F%2C PrxII F%2C OsPrxIIF%2C PrxIIF;Oryzabase Gene Name Synonym(s)=Type-II Prx F%2C Type-II peroxiredoxin F;Note=Thioredoxin fold domain containing protein.;Transcript_evidence=AK069749 (DDBJ%2C Best hit);ORF_evidence=B7E2T3 (UniProt);GO=Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Thioredoxin-like fold (IPR012336),Redoxin (IPR013740);NIAS_FLcDNA=J023030N01;Oryzabase=21751;Expression=AK069749;TENOR=Os01t0266600-01;KEGG=Os01t0266600-01 (EC:1.11.1.15)
Chr01	irgsp1_rep	five_prime_UTR	9121307	9121411	.	-	.	Parent=Os01t0266600-01
Chr01	irgsp1_rep	CDS	9121100	9121306	.	-	0	Parent=Os01t0266600-01
Chr01	irgsp1_rep	CDS	9120968	9120997	.	-	0	Parent=Os01t0266600-01
Chr01	irgsp1_rep	CDS	9120083	9120241	.	-	0	Parent=Os01t0266600-01
Chr01	irgsp1_rep	CDS	9119426	9119520	.	-	0	Parent=Os01t0266600-01
Chr01	irgsp1_rep	CDS	9118391	9118496	.	-	1	Parent=Os01t0266600-01
Chr01	irgsp1_rep	three_prime_UTR	9118207	9118390	.	-	.	Parent=Os01t0266600-01
Chr01	irgsp1_rep	mRNA	9118186	9121337	.	-	.	ID=Os01t0266600-02;Name=Os01t0266600-02;Locus_id=Os01g0266600;CGSNL Gene Symbol=PRXIIF;CGSNL Gene Name=TYPE-II PEROXIREDOXIN F;Oryzabase Gene Symbol Synonym(s)=OsPrxII F%2C PrxII F%2C OsPrxIIF%2C PrxIIF;Oryzabase Gene Name Synonym(s)=Type-II Prx F%2C Type-II peroxiredoxin F;Note=Thioredoxin fold domain containing protein.;Transcript_evidence=AK058396 (DDBJ%2C Best hit);ORF_evidence=Q9SDD6 (UniProt);GO=Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Thioredoxin-like fold (IPR012336),Redoxin (IPR013740);NIAS_FLcDNA=001-015-A12;Oryzabase=21751;TENOR=Os01t0266600-02
Chr01	irgsp1_rep	five_prime_UTR	9121307	9121337	.	-	.	Parent=Os01t0266600-02
Chr01	irgsp1_rep	CDS	9121100	9121306	.	-	0	Parent=Os01t0266600-02
Chr01	irgsp1_rep	CDS	9120968	9120997	.	-	0	Parent=Os01t0266600-02
Chr01	irgsp1_rep	CDS	9120083	9120241	.	-	0	Parent=Os01t0266600-02
Chr01	irgsp1_rep	CDS	9119426	9119520	.	-	0	Parent=Os01t0266600-02
Chr01	irgsp1_rep	CDS	9118391	9118496	.	-	1	Parent=Os01t0266600-02
Chr01	irgsp1_rep	three_prime_UTR	9118186	9118390	.	-	.	Parent=Os01t0266600-02
Chr01	irgsp1_rep	mRNA	9133740	9140430	.	-	.	ID=Os01t0266800-01;Name=Os01t0266800-01;Locus_id=Os01g0266800;Note=Cystinosin/ERS1p repeat containing protein.;Transcript_evidence=AK069474 (DDBJ%2C Best hit);ORF_evidence=B6UIB9 (UniProt);InterPro=Cystinosin/ERS1p repeat (IPR006603);NIAS_FLcDNA=J023019E21;Expression=AK069474;TENOR=Os01t0266800-01;KEGG=Os01t0266800-01
Chr01	irgsp1_rep	five_prime_UTR	9140318	9140430	.	-	.	Parent=Os01t0266800-01
Chr01	irgsp1_rep	five_prime_UTR	9139024	9139036	.	-	.	Parent=Os01t0266800-01
Chr01	irgsp1_rep	CDS	9138779	9139023	.	-	0	Parent=Os01t0266800-01
Chr01	irgsp1_rep	CDS	9138607	9138649	.	-	1	Parent=Os01t0266800-01
Chr01	irgsp1_rep	CDS	9138088	9138114	.	-	0	Parent=Os01t0266800-01
Chr01	irgsp1_rep	CDS	9137900	9137998	.	-	0	Parent=Os01t0266800-01
Chr01	irgsp1_rep	CDS	9137382	9137572	.	-	0	Parent=Os01t0266800-01
Chr01	irgsp1_rep	CDS	9137012	9137183	.	-	1	Parent=Os01t0266800-01
Chr01	irgsp1_rep	CDS	9136815	9136934	.	-	0	Parent=Os01t0266800-01
Chr01	irgsp1_rep	CDS	9136608	9136724	.	-	0	Parent=Os01t0266800-01
Chr01	irgsp1_rep	CDS	9135964	9135985	.	-	0	Parent=Os01t0266800-01
Chr01	irgsp1_rep	CDS	9135732	9135789	.	-	2	Parent=Os01t0266800-01
Chr01	irgsp1_rep	CDS	9135510	9135600	.	-	1	Parent=Os01t0266800-01
Chr01	irgsp1_rep	CDS	9135015	9135092	.	-	0	Parent=Os01t0266800-01
Chr01	irgsp1_rep	three_prime_UTR	9134972	9135014	.	-	.	Parent=Os01t0266800-01
Chr01	irgsp1_rep	three_prime_UTR	9133740	9134133	.	-	.	Parent=Os01t0266800-01
Chr01	irgsp1_rep	mRNA	9159637	9160291	.	-	.	ID=Os01t0267050-01;Name=Os01t0267050-01;Locus_id=Os01g0267050;Note=Non-protein coding transcript.;Transcript_evidence=AK105155 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-103-F09;TENOR=Os01t0267050-01
Chr01	irgsp1_rep	exon	9159637	9160291	.	-	.	Parent=Os01t0267050-01
Chr01	irgsp1_rep	mRNA	9159753	9165677	.	+	.	ID=Os01t0267100-01;Name=Os01t0267100-01;Locus_id=Os01g0267100;CGSNL Gene Symbol=MTA1;CGSNL Gene Name=MRNA ADENOSINE METHYLASE 1;Oryzabase Gene Symbol Synonym(s)=OsMTA1;Oryzabase Gene Name Synonym(s)=mRNA adenosine methylase 1;Note=MT-A70 family protein.;Transcript_evidence=AK065023 (DDBJ%2C Best hit);ORF_evidence=Q10RS1 (UniProt);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Biological Process: methylation (GO:0032259),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: methyltransferase activity (GO:0008168);InterPro=DNA methylase%2C N-6 adenine-specific%2C conserved site (IPR002052),MT-A70 (IPR007757);NIAS_FLcDNA=J013001G08;Oryzabase=23093;Expression=AK065023;TENOR=Os01t0267100-01;KEGG=Os01t0267100-01
Chr01	irgsp1_rep	five_prime_UTR	9159753	9162024	.	+	.	Parent=Os01t0267100-01
Chr01	irgsp1_rep	CDS	9162025	9163722	.	+	0	Parent=Os01t0267100-01
Chr01	irgsp1_rep	CDS	9163837	9163920	.	+	0	Parent=Os01t0267100-01
Chr01	irgsp1_rep	CDS	9164095	9164199	.	+	0	Parent=Os01t0267100-01
Chr01	irgsp1_rep	CDS	9164310	9164418	.	+	0	Parent=Os01t0267100-01
Chr01	irgsp1_rep	CDS	9164956	9165107	.	+	2	Parent=Os01t0267100-01
Chr01	irgsp1_rep	CDS	9165210	9165356	.	+	0	Parent=Os01t0267100-01
Chr01	irgsp1_rep	three_prime_UTR	9165357	9165677	.	+	.	Parent=Os01t0267100-01
Chr01	irgsp1_rep	mRNA	9166370	9169867	.	+	.	ID=Os01t0267200-01;Name=Os01t0267200-01;Locus_id=Os01g0267200;CGSNL Gene Symbol=RPN11;CGSNL Gene Name=19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 11;Oryzabase Gene Symbol Synonym(s)=OsRpn11%2C Rpn11;Oryzabase Gene Name Synonym(s)=19S regulatory particle non-ATPase subunit 11%2C RP non-ATPase 11;Note=Similar to 26S proteasome non-ATPase regulatory subunit 14 (26S proteasome regulatory subunit rpn11).;Transcript_evidence=AK099455 (DDBJ%2C Best hit);ORF_evidence=B4FLQ8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Mov34/MPN/PAD-1 (IPR000555);NIAS_FLcDNA=J013022M19;Oryzabase=20570;Expression=AK099455;TENOR=Os01t0267200-01;KEGG=Os01t0267200-01
Chr01	irgsp1_rep	five_prime_UTR	9166370	9166453	.	+	.	Parent=Os01t0267200-01
Chr01	irgsp1_rep	CDS	9166454	9166580	.	+	0	Parent=Os01t0267200-01
Chr01	irgsp1_rep	CDS	9166658	9166835	.	+	2	Parent=Os01t0267200-01
Chr01	irgsp1_rep	CDS	9168256	9168337	.	+	1	Parent=Os01t0267200-01
Chr01	irgsp1_rep	CDS	9168907	9169083	.	+	0	Parent=Os01t0267200-01
Chr01	irgsp1_rep	CDS	9169174	9169341	.	+	0	Parent=Os01t0267200-01
Chr01	irgsp1_rep	CDS	9169466	9169657	.	+	0	Parent=Os01t0267200-01
Chr01	irgsp1_rep	three_prime_UTR	9169658	9169867	.	+	.	Parent=Os01t0267200-01
Chr01	irgsp1_rep	mRNA	9171328	9172907	.	+	.	ID=Os01t0267300-00;Name=Os01t0267300-00;Locus_id=Os01g0267300;Oryzabase Gene Symbol Synonym(s)=OsSRP-QKG%2C OrysaZ12;Oryzabase Gene Name Synonym(s)=serpin-Z12;Note=Hypothetical conserved gene.;Transcript_evidence=AK359881 (DDBJ);ORF_evidence=NP_001042684.2 (RefSeq);GO=Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Protease inhibitor I4%2C serpin (IPR000215),Protease inhibitor I4%2C serpin%2C plant (IPR015554),Protease inhibitor I4%2C serpin%2C conserved site (IPR023795),Serpin domain (IPR023796);Oryzabase=11579;TENOR=Os01t0267300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	9171328	9172899	.	+	0	Parent=Os01t0267300-00
Chr01	irgsp1_rep	three_prime_UTR	9172900	9172907	.	+	.	Parent=Os01t0267300-00
Chr01	irgsp1_rep	mRNA	9173234	9175902	.	-	.	ID=Os01t0267400-01;Name=Os01t0267400-01;Locus_id=Os01g0267400;Note=Similar to cell number regulator 5.;Transcript_evidence=AK242388 (DDBJ%2C Best hit);ORF_evidence=NP_001132085.1 (RefSeq);InterPro=Uncharacterised protein family Cys-rich (IPR006461);NIAS_FLcDNA=J080051F22;TENOR=Os01t0267400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	9175681	9175902	.	-	.	Parent=Os01t0267400-01
Chr01	irgsp1_rep	five_prime_UTR	9175154	9175312	.	-	.	Parent=Os01t0267400-01
Chr01	irgsp1_rep	CDS	9175087	9175153	.	-	0	Parent=Os01t0267400-01
Chr01	irgsp1_rep	CDS	9174416	9174642	.	-	2	Parent=Os01t0267400-01
Chr01	irgsp1_rep	CDS	9173529	9173678	.	-	0	Parent=Os01t0267400-01
Chr01	irgsp1_rep	three_prime_UTR	9173234	9173528	.	-	.	Parent=Os01t0267400-01
Chr01	irgsp1_rep	mRNA	9179218	9181984	.	-	.	ID=Os01t0267600-01;Name=Os01t0267600-01;Locus_id=Os01g0267600;RAP-DB Gene Symbol Synonym(s)=OsSUN2;RAP-DB Gene Name Synonym(s)=Sad1/UNC-84 (SUN) domain protein 2;CGSNL Gene Symbol=SUN1;CGSNL Gene Name=SUN DOMAIN-CONTAINING PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsSUN1;Oryzabase Gene Name Synonym(s)=SUN (Sad1/UNC-84) domain-containing protein 1%2C SUN domain-containing protein 1%2C SUN protein 1;Note=Sad1/UNC-84 (SUN) domain protein%2C Promotion of telomere clustering and homologous pairing in meiosis;Transcript_evidence=AK287530;ORF_evidence=Q5NBL8;InterPro=Galactose-binding-like domain superfamily (IPR008979),SUN domain (IPR012919);NIAS_FLcDNA=J065001L02;Manual Curation=June 24%2C 2020;Literature_PMID=32554471;Oryzabase=22680;TENOR=Os01t0267600-01;KEGG=Os01t0267600-01;Subcellular location=nuclear envelope (GO:0005635)
Chr01	irgsp1_rep	five_prime_UTR	9181875	9181984	.	-	.	Parent=Os01t0267600-01
Chr01	irgsp1_rep	CDS	9180819	9181874	.	-	0	Parent=Os01t0267600-01
Chr01	irgsp1_rep	CDS	9179427	9179738	.	-	0	Parent=Os01t0267600-01
Chr01	irgsp1_rep	three_prime_UTR	9179218	9179426	.	-	.	Parent=Os01t0267600-01
Chr01	irgsp1_rep	mRNA	9192164	9193439	.	+	.	ID=Os01t0267800-00;Name=Os01t0267800-00;Locus_id=Os01g0267800;CGSNL Gene Symbol=RLCK29;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 29;Oryzabase Gene Symbol Synonym(s)=OsRLCK29;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 29;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK336038 (DDBJ);ORF_evidence=NP_001042687.2 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);Oryzabase=18748;TENOR=Os01t0267800-00;KEGG=Os01t0267800-00
Chr01	irgsp1_rep	five_prime_UTR	9192164	9192248	.	+	.	Parent=Os01t0267800-00
Chr01	irgsp1_rep	CDS	9192249	9193439	.	+	0	Parent=Os01t0267800-00
Chr01	irgsp1_rep	mRNA	9195546	9198962	.	-	.	ID=Os01t0267900-01;Name=Os01t0267900-01;Locus_id=Os01g0267900;RAP-DB Gene Symbol Synonym(s)=OsCam1-3%2C OsCaM1;RAP-DB Gene Name Synonym(s)=calmodulin 1-3;Oryzabase Gene Symbol Synonym(s)=OsCam1-3%2C OsCaM1-3%2C CAM1;Oryzabase Gene Name Synonym(s)=Calmodulin 1-3%2C calmodulin 1;Note=Calmodulin%2C Ca<sup>2+</sup> sensor%2C Ca<sup>2+</sup> signalling;Transcript_evidence=AK242346;ORF_evidence=Q0JNS6;GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand domain pair (IPR011992),Phosphoglycolate phosphatase%2C domain 2 (IPR023198),EF-hand domain (IPR002048),EF-Hand 1%2C calcium-binding site (IPR018247);NIAS_FLcDNA=J080012M07;Manual Curation=December 19%2C 2017;Literature_PMID=22428987,17263873;Oryzabase=10405;TENOR=Os01t0267900-01;KEGG=Os01t0267900-01
Chr01	irgsp1_rep	five_prime_UTR	9198859	9198962	.	-	.	Parent=Os01t0267900-01
Chr01	irgsp1_rep	CDS	9198783	9198858	.	-	0	Parent=Os01t0267900-01
Chr01	irgsp1_rep	CDS	9195783	9196156	.	-	2	Parent=Os01t0267900-01
Chr01	irgsp1_rep	three_prime_UTR	9195546	9195782	.	-	.	Parent=Os01t0267900-01
Chr01	irgsp1_rep	mRNA	9201354	9202372	.	+	.	ID=Os01t0268000-01;Name=Os01t0268000-01;Locus_id=Os01g0268000;Note=Hypothetical protein.;Transcript_evidence=AK107975 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-135-D12;Expression=AK107975;TENOR=Os01t0268000-01;KEGG=Os01t0268000-01
Chr01	irgsp1_rep	five_prime_UTR	9201354	9201844	.	+	.	Parent=Os01t0268000-01
Chr01	irgsp1_rep	CDS	9201845	9202183	.	+	0	Parent=Os01t0268000-01
Chr01	irgsp1_rep	three_prime_UTR	9202184	9202372	.	+	.	Parent=Os01t0268000-01
Chr01	irgsp1_rep	mRNA	9204377	9211643	.	-	.	ID=Os01t0268100-01;Name=Os01t0268100-01;Locus_id=Os01g0268100;CGSNL Gene Symbol=ZIFL1;CGSNL Gene Name=ZINC-INDUCED FACILITATOR-LIKE 1;Oryzabase Gene Symbol Synonym(s)=OsZIFL1;Oryzabase Gene Name Synonym(s)=zinc-induced facilitator-like 1;Note=Similar to Major facilitator superfamily antiporter.;Transcript_evidence=AK066443 (DDBJ%2C Best hit);ORF_evidence=NP_001150835.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J013067J16;Oryzabase=9470;Expression=AK066443;TENOR=Os01t0268100-01;KEGG=Os01t0268100-01
Chr01	irgsp1_rep	five_prime_UTR	9211563	9211643	.	-	.	Parent=Os01t0268100-01
Chr01	irgsp1_rep	CDS	9211412	9211562	.	-	0	Parent=Os01t0268100-01
Chr01	irgsp1_rep	CDS	9210185	9210225	.	-	2	Parent=Os01t0268100-01
Chr01	irgsp1_rep	CDS	9209489	9209549	.	-	0	Parent=Os01t0268100-01
Chr01	irgsp1_rep	CDS	9209246	9209348	.	-	2	Parent=Os01t0268100-01
Chr01	irgsp1_rep	CDS	9209028	9209130	.	-	1	Parent=Os01t0268100-01
Chr01	irgsp1_rep	CDS	9208882	9208935	.	-	0	Parent=Os01t0268100-01
Chr01	irgsp1_rep	CDS	9208715	9208777	.	-	0	Parent=Os01t0268100-01
Chr01	irgsp1_rep	CDS	9208332	9208381	.	-	0	Parent=Os01t0268100-01
Chr01	irgsp1_rep	CDS	9208181	9208256	.	-	1	Parent=Os01t0268100-01
Chr01	irgsp1_rep	CDS	9207725	9207910	.	-	0	Parent=Os01t0268100-01
Chr01	irgsp1_rep	CDS	9207492	9207579	.	-	0	Parent=Os01t0268100-01
Chr01	irgsp1_rep	CDS	9207003	9207088	.	-	2	Parent=Os01t0268100-01
Chr01	irgsp1_rep	CDS	9206805	9206912	.	-	0	Parent=Os01t0268100-01
Chr01	irgsp1_rep	CDS	9206565	9206609	.	-	0	Parent=Os01t0268100-01
Chr01	irgsp1_rep	CDS	9206345	9206433	.	-	0	Parent=Os01t0268100-01
Chr01	irgsp1_rep	CDS	9205725	9205768	.	-	1	Parent=Os01t0268100-01
Chr01	irgsp1_rep	CDS	9204448	9204560	.	-	2	Parent=Os01t0268100-01
Chr01	irgsp1_rep	three_prime_UTR	9204377	9204447	.	-	.	Parent=Os01t0268100-01
Chr01	irgsp1_rep	mRNA	9204472	9209552	.	+	.	ID=Os01t0268201-00;Name=Os01t0268201-00;Locus_id=Os01g0268201;Note=Non-protein coding transcript.;Transcript_evidence=tplb0060m14 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os01t0268201-00
Chr01	irgsp1_rep	exon	9204472	9204579	.	+	.	Parent=Os01t0268201-00
Chr01	irgsp1_rep	exon	9206319	9206424	.	+	.	Parent=Os01t0268201-00
Chr01	irgsp1_rep	exon	9206558	9206595	.	+	.	Parent=Os01t0268201-00
Chr01	irgsp1_rep	exon	9206791	9206925	.	+	.	Parent=Os01t0268201-00
Chr01	irgsp1_rep	exon	9207021	9207098	.	+	.	Parent=Os01t0268201-00
Chr01	irgsp1_rep	exon	9207505	9207590	.	+	.	Parent=Os01t0268201-00
Chr01	irgsp1_rep	exon	9207736	9207922	.	+	.	Parent=Os01t0268201-00
Chr01	irgsp1_rep	exon	9208194	9208270	.	+	.	Parent=Os01t0268201-00
Chr01	irgsp1_rep	exon	9208345	9208384	.	+	.	Parent=Os01t0268201-00
Chr01	irgsp1_rep	exon	9208724	9208805	.	+	.	Parent=Os01t0268201-00
Chr01	irgsp1_rep	exon	9209000	9209130	.	+	.	Parent=Os01t0268201-00
Chr01	irgsp1_rep	exon	9209246	9209345	.	+	.	Parent=Os01t0268201-00
Chr01	irgsp1_rep	exon	9209486	9209552	.	+	.	Parent=Os01t0268201-00
Chr01	irgsp1_rep	mRNA	9225213	9237025	.	+	.	ID=Os01t0268300-01;Name=Os01t0268300-01;Locus_id=Os01g0268300;Note=Similar to DNA gyrase B subunit.;Transcript_evidence=AK102391 (DDBJ%2C Best hit);ORF_evidence=Q5NBJ3 (UniProt);GO=Biological Process: DNA topological change (GO:0006265),Cellular Component: Chromosome (GO:0005694),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA topoisomerase (ATP-hydrolyzing) activity (GO:0003918),Molecular Function: ATP binding (GO:0005524);InterPro=DNA topoisomerase%2C type IIA%2C subunit B (IPR000565),DNA topoisomerase%2C type IIA%2C subunit B/N-terminal (IPR001241),DNA topoisomerase%2C type IIA%2C subunit B%2C C-terminal (IPR002288),ATPase-like%2C ATP-binding domain (IPR003594),DNA gyrase%2C subunit B (IPR011557),DNA topoisomerase%2C type IIA%2C subunit B%2C domain 2 (IPR013506),DNA topoisomerase%2C type IIA%2C subunit B/N-terminal%2C alpha-beta (IPR013759),DNA topoisomerase%2C type IIA%2C central (IPR013760),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),DNA topoisomerase%2C type IIA%2C conserved site (IPR018522),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=J033092E15;Expression=AK102391;TENOR=Os01t0268300-01;KEGG=Os01t0268300-01 (EC:5.99.1.3)
Chr01	irgsp1_rep	five_prime_UTR	9225213	9225330	.	+	.	Parent=Os01t0268300-01
Chr01	irgsp1_rep	CDS	9225331	9225473	.	+	0	Parent=Os01t0268300-01
Chr01	irgsp1_rep	CDS	9225586	9225727	.	+	1	Parent=Os01t0268300-01
Chr01	irgsp1_rep	CDS	9226853	9226933	.	+	0	Parent=Os01t0268300-01
Chr01	irgsp1_rep	CDS	9227031	9227144	.	+	0	Parent=Os01t0268300-01
Chr01	irgsp1_rep	CDS	9227770	9227826	.	+	0	Parent=Os01t0268300-01
Chr01	irgsp1_rep	CDS	9228209	9228310	.	+	0	Parent=Os01t0268300-01
Chr01	irgsp1_rep	CDS	9228617	9228767	.	+	0	Parent=Os01t0268300-01
Chr01	irgsp1_rep	CDS	9228851	9228927	.	+	2	Parent=Os01t0268300-01
Chr01	irgsp1_rep	CDS	9229721	9229828	.	+	0	Parent=Os01t0268300-01
Chr01	irgsp1_rep	CDS	9230684	9230754	.	+	0	Parent=Os01t0268300-01
Chr01	irgsp1_rep	CDS	9231546	9231687	.	+	1	Parent=Os01t0268300-01
Chr01	irgsp1_rep	CDS	9231903	9232001	.	+	0	Parent=Os01t0268300-01
Chr01	irgsp1_rep	CDS	9232112	9232240	.	+	0	Parent=Os01t0268300-01
Chr01	irgsp1_rep	CDS	9232445	9232559	.	+	0	Parent=Os01t0268300-01
Chr01	irgsp1_rep	CDS	9232786	9232853	.	+	2	Parent=Os01t0268300-01
Chr01	irgsp1_rep	CDS	9234410	9234523	.	+	0	Parent=Os01t0268300-01
Chr01	irgsp1_rep	CDS	9234587	9234703	.	+	0	Parent=Os01t0268300-01
Chr01	irgsp1_rep	CDS	9235079	9235132	.	+	0	Parent=Os01t0268300-01
Chr01	irgsp1_rep	CDS	9235221	9235326	.	+	0	Parent=Os01t0268300-01
Chr01	irgsp1_rep	CDS	9236272	9236402	.	+	2	Parent=Os01t0268300-01
Chr01	irgsp1_rep	CDS	9236489	9236557	.	+	0	Parent=Os01t0268300-01
Chr01	irgsp1_rep	three_prime_UTR	9236558	9237025	.	+	.	Parent=Os01t0268300-01
Chr01	irgsp1_rep	mRNA	9231565	9236957	.	+	.	ID=Os01t0268300-02;Name=Os01t0268300-02;Locus_id=Os01g0268300;Note=Similar to DNA gyrase subunit B%2C chloroplastic/mitochondrial.;Transcript_evidence=AK058666 (DDBJ%2C Best hit);ORF_evidence=Q5NBJ3 (UniProt);GO=Biological Process: DNA topological change (GO:0006265),Cellular Component: Chromosome (GO:0005694),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA topoisomerase (ATP-hydrolyzing) activity (GO:0003918),Molecular Function: ATP binding (GO:0005524);InterPro=DNA topoisomerase%2C type IIA%2C subunit B (IPR000565),DNA topoisomerase%2C type IIA%2C subunit B/N-terminal (IPR001241),DNA topoisomerase%2C type IIA%2C subunit B%2C C-terminal (IPR002288),Toprim domain (IPR006171),DNA topoisomerase%2C type IIA%2C subunit B%2C domain 2 (IPR013506),DNA topoisomerase%2C type IIA%2C subunit B/N-terminal%2C alpha-beta (IPR013759),DNA topoisomerase%2C type IIA%2C central (IPR013760),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),DNA topoisomerase%2C type IIA%2C conserved site (IPR018522),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=001-018-G09;Expression=AK058666;TENOR=Os01t0268300-02;KEGG=Os01t0268300-02 (EC:5.99.1.3)
Chr01	irgsp1_rep	CDS	9231565	9231687	.	+	0	Parent=Os01t0268300-02
Chr01	irgsp1_rep	CDS	9231903	9232001	.	+	0	Parent=Os01t0268300-02
Chr01	irgsp1_rep	CDS	9232112	9232240	.	+	0	Parent=Os01t0268300-02
Chr01	irgsp1_rep	CDS	9232445	9232559	.	+	0	Parent=Os01t0268300-02
Chr01	irgsp1_rep	CDS	9232786	9232853	.	+	2	Parent=Os01t0268300-02
Chr01	irgsp1_rep	CDS	9234410	9234523	.	+	0	Parent=Os01t0268300-02
Chr01	irgsp1_rep	CDS	9234587	9234703	.	+	0	Parent=Os01t0268300-02
Chr01	irgsp1_rep	CDS	9235079	9235132	.	+	0	Parent=Os01t0268300-02
Chr01	irgsp1_rep	CDS	9235221	9235326	.	+	0	Parent=Os01t0268300-02
Chr01	irgsp1_rep	CDS	9236272	9236402	.	+	2	Parent=Os01t0268300-02
Chr01	irgsp1_rep	CDS	9236489	9236557	.	+	0	Parent=Os01t0268300-02
Chr01	irgsp1_rep	three_prime_UTR	9236558	9236957	.	+	.	Parent=Os01t0268300-02
Chr01	irgsp1_rep	mRNA	9245577	9253404	.	+	.	ID=Os01t0268600-01;Name=Os01t0268600-01;Locus_id=Os01g0268600;Note=Glycoside hydrolase%2C family 31 protein.;Transcript_evidence=AK287495 (DDBJ%2C Best hit);ORF_evidence=NP_001042692.2 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Glycoside hydrolase%2C family 31 (IPR000322),Glycoside hydrolase-type carbohydrate-binding (IPR011013),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J043033A01;TENOR=Os01t0268600-01;KEGG=Os01t0268600-01
Chr01	irgsp1_rep	five_prime_UTR	9245577	9245627	.	+	.	Parent=Os01t0268600-01
Chr01	irgsp1_rep	CDS	9245628	9246748	.	+	0	Parent=Os01t0268600-01
Chr01	irgsp1_rep	CDS	9248696	9248828	.	+	1	Parent=Os01t0268600-01
Chr01	irgsp1_rep	CDS	9249233	9249448	.	+	0	Parent=Os01t0268600-01
Chr01	irgsp1_rep	CDS	9250802	9250957	.	+	0	Parent=Os01t0268600-01
Chr01	irgsp1_rep	CDS	9251296	9251979	.	+	0	Parent=Os01t0268600-01
Chr01	irgsp1_rep	CDS	9252118	9252234	.	+	0	Parent=Os01t0268600-01
Chr01	irgsp1_rep	CDS	9252822	9253193	.	+	0	Parent=Os01t0268600-01
Chr01	irgsp1_rep	three_prime_UTR	9253194	9253404	.	+	.	Parent=Os01t0268600-01
Chr01	irgsp1_rep	mRNA	9253938	9255239	.	-	.	ID=Os01t0268700-00;Name=Os01t0268700-00;Locus_id=Os01g0268700;Oryzabase Gene Symbol Synonym(s)=OsSTA10;Note=Protein of unknown function DUF617%2C plant domain containing protein.;Transcript_evidence=EU954439 (DDBJ);ORF_evidence=Q5NBJ0 (UniProt);InterPro=Protein of unknown function DUF617%2C plant (IPR006460);Oryzabase=19324;TENOR=Os01t0268700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	9254034	9255239	.	-	0	Parent=Os01t0268700-00
Chr01	irgsp1_rep	three_prime_UTR	9253938	9254033	.	-	.	Parent=Os01t0268700-00
Chr01	irgsp1_rep	mRNA	9254067	9255167	.	+	.	ID=Os01t0268733-00;Name=Os01t0268733-00;Locus_id=Os01g0268733;Note=Hypothetical gene.;Transcript_evidence=EU968656 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0268733-00;KEGG=Os01t0268733-00
Chr01	irgsp1_rep	five_prime_UTR	9254067	9254390	.	+	.	Parent=Os01t0268733-00
Chr01	irgsp1_rep	CDS	9254391	9254735	.	+	0	Parent=Os01t0268733-00
Chr01	irgsp1_rep	CDS	9254877	9255167	.	+	0	Parent=Os01t0268733-00
Chr01	irgsp1_rep	mRNA	9259148	9264227	.	+	.	ID=Os01t0268800-01;Name=Os01t0268800-01;Locus_id=Os01g0268800;Oryzabase Gene Symbol Synonym(s)=OsRhmbd2%2C RHMBD2;Oryzabase Gene Name Synonym(s)=Rhomboid 2%2C RHOMBOID 2;Note=Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote domain containing protein.;Transcript_evidence=AK105874 (DDBJ%2C Best hit);ORF_evidence=B6TK04 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal (IPR000449),UBA-like (IPR009060),Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (IPR015940);NIAS_FLcDNA=001-204-B06;Oryzabase=20058;Expression=AK105874;TENOR=Os01t0268800-01;KEGG=Os01t0268800-01
Chr01	irgsp1_rep	five_prime_UTR	9259148	9259426	.	+	.	Parent=Os01t0268800-01
Chr01	irgsp1_rep	CDS	9259427	9259451	.	+	0	Parent=Os01t0268800-01
Chr01	irgsp1_rep	CDS	9259581	9259681	.	+	2	Parent=Os01t0268800-01
Chr01	irgsp1_rep	CDS	9260625	9260765	.	+	0	Parent=Os01t0268800-01
Chr01	irgsp1_rep	CDS	9261263	9261329	.	+	0	Parent=Os01t0268800-01
Chr01	irgsp1_rep	CDS	9262039	9262193	.	+	2	Parent=Os01t0268800-01
Chr01	irgsp1_rep	CDS	9262285	9262386	.	+	0	Parent=Os01t0268800-01
Chr01	irgsp1_rep	CDS	9263022	9263141	.	+	0	Parent=Os01t0268800-01
Chr01	irgsp1_rep	CDS	9263688	9263855	.	+	0	Parent=Os01t0268800-01
Chr01	irgsp1_rep	three_prime_UTR	9263856	9264227	.	+	.	Parent=Os01t0268800-01
Chr01	irgsp1_rep	mRNA	9259171	9264216	.	+	.	ID=Os01t0268800-02;Name=Os01t0268800-02;Locus_id=Os01g0268800;Oryzabase Gene Symbol Synonym(s)=OsRhmbd2%2C RHMBD2;Oryzabase Gene Name Synonym(s)=Rhomboid 2%2C RHOMBOID 2;Note=Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote domain containing protein.;Transcript_evidence=AK073347 (DDBJ%2C Best hit);ORF_evidence=B6TK04 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal (IPR000449),UBA-like (IPR009060),Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (IPR015940);NIAS_FLcDNA=J033024L23;Oryzabase=20058;Expression=AK073347;TENOR=Os01t0268800-02;KEGG=Os01t0268800-02
Chr01	irgsp1_rep	five_prime_UTR	9259171	9259426	.	+	.	Parent=Os01t0268800-02
Chr01	irgsp1_rep	CDS	9259427	9259451	.	+	0	Parent=Os01t0268800-02
Chr01	irgsp1_rep	CDS	9259581	9259681	.	+	2	Parent=Os01t0268800-02
Chr01	irgsp1_rep	CDS	9260625	9260765	.	+	0	Parent=Os01t0268800-02
Chr01	irgsp1_rep	CDS	9261263	9261329	.	+	0	Parent=Os01t0268800-02
Chr01	irgsp1_rep	CDS	9262039	9262193	.	+	2	Parent=Os01t0268800-02
Chr01	irgsp1_rep	CDS	9262285	9262386	.	+	0	Parent=Os01t0268800-02
Chr01	irgsp1_rep	CDS	9263022	9263141	.	+	0	Parent=Os01t0268800-02
Chr01	irgsp1_rep	CDS	9263688	9263855	.	+	0	Parent=Os01t0268800-02
Chr01	irgsp1_rep	three_prime_UTR	9263856	9264216	.	+	.	Parent=Os01t0268800-02
Chr01	irgsp1_rep	mRNA	9264978	9268375	.	+	.	ID=Os01t0268900-01;Name=Os01t0268900-01;Locus_id=Os01g0268900;Note=Conserved hypothetical protein.;Transcript_evidence=AK062596 (DDBJ%2C Best hit);ORF_evidence=B8AC85 (UniProt);NIAS_FLcDNA=001-102-C05;Expression=AK062596;TENOR=Os01t0268900-01;KEGG=Os01t0268900-01
Chr01	irgsp1_rep	five_prime_UTR	9264978	9264989	.	+	.	Parent=Os01t0268900-01
Chr01	irgsp1_rep	CDS	9264990	9265409	.	+	0	Parent=Os01t0268900-01
Chr01	irgsp1_rep	CDS	9265498	9265603	.	+	0	Parent=Os01t0268900-01
Chr01	irgsp1_rep	CDS	9265825	9265877	.	+	2	Parent=Os01t0268900-01
Chr01	irgsp1_rep	CDS	9266249	9266380	.	+	0	Parent=Os01t0268900-01
Chr01	irgsp1_rep	CDS	9267250	9267322	.	+	0	Parent=Os01t0268900-01
Chr01	irgsp1_rep	CDS	9268075	9268154	.	+	2	Parent=Os01t0268900-01
Chr01	irgsp1_rep	three_prime_UTR	9268155	9268375	.	+	.	Parent=Os01t0268900-01
Chr01	irgsp1_rep	mRNA	9268690	9272912	.	-	.	ID=Os01t0269000-01;Name=Os01t0269000-01;Locus_id=Os01g0269000;Note=Similar to Hydroxymethylglutaryl-CoA lyase.;Transcript_evidence=AK068875 (DDBJ%2C Best hit);ORF_evidence=B6U7B9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydroxymethylglutaryl-CoA lyase activity (GO:0004419);InterPro=Hydroxymethylglutaryl-CoA lyase%2C active site (IPR000138),Pyruvate carboxyltransferase (IPR000891),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J013170O18;Expression=AK068875;TENOR=Os01t0269000-01;KEGG=Os01t0269000-01 (EC:4.1.3.4)
Chr01	irgsp1_rep	five_prime_UTR	9272758	9272912	.	-	.	Parent=Os01t0269000-01
Chr01	irgsp1_rep	CDS	9272489	9272757	.	-	0	Parent=Os01t0269000-01
Chr01	irgsp1_rep	CDS	9272107	9272284	.	-	1	Parent=Os01t0269000-01
Chr01	irgsp1_rep	CDS	9271783	9271962	.	-	0	Parent=Os01t0269000-01
Chr01	irgsp1_rep	CDS	9270892	9270972	.	-	0	Parent=Os01t0269000-01
Chr01	irgsp1_rep	CDS	9270645	9270808	.	-	0	Parent=Os01t0269000-01
Chr01	irgsp1_rep	CDS	9269991	9270127	.	-	1	Parent=Os01t0269000-01
Chr01	irgsp1_rep	CDS	9269395	9269510	.	-	2	Parent=Os01t0269000-01
Chr01	irgsp1_rep	CDS	9268891	9269145	.	-	0	Parent=Os01t0269000-01
Chr01	irgsp1_rep	three_prime_UTR	9268690	9268890	.	-	.	Parent=Os01t0269000-01
Chr01	irgsp1_rep	mRNA	9273876	9279031	.	-	.	ID=Os01t0269100-01;Name=Os01t0269100-01;Locus_id=Os01g0269100;Note=Similar to Rab proteins geranylgeranyltransferase component A 2 (Rab escort protein 2) (REP-2) (Choroideraemia-like protein).;Transcript_evidence=AK067610 (DDBJ%2C Best hit);ORF_evidence=B9EV51 (UniProt);InterPro=GDP dissociation inhibitor (IPR018203);NIAS_FLcDNA=J013112F12;Expression=AK067610;TENOR=Os01t0269100-01;KEGG=Os01t0269100-01
Chr01	irgsp1_rep	five_prime_UTR	9278896	9279031	.	-	.	Parent=Os01t0269100-01
Chr01	irgsp1_rep	CDS	9278171	9278895	.	-	0	Parent=Os01t0269100-01
Chr01	irgsp1_rep	CDS	9277962	9278084	.	-	1	Parent=Os01t0269100-01
Chr01	irgsp1_rep	CDS	9277695	9277783	.	-	1	Parent=Os01t0269100-01
Chr01	irgsp1_rep	CDS	9277121	9277155	.	-	2	Parent=Os01t0269100-01
Chr01	irgsp1_rep	three_prime_UTR	9277117	9277120	.	-	.	Parent=Os01t0269100-01
Chr01	irgsp1_rep	three_prime_UTR	9276553	9276769	.	-	.	Parent=Os01t0269100-01
Chr01	irgsp1_rep	three_prime_UTR	9276374	9276449	.	-	.	Parent=Os01t0269100-01
Chr01	irgsp1_rep	three_prime_UTR	9276013	9276211	.	-	.	Parent=Os01t0269100-01
Chr01	irgsp1_rep	three_prime_UTR	9275823	9275903	.	-	.	Parent=Os01t0269100-01
Chr01	irgsp1_rep	three_prime_UTR	9275355	9275463	.	-	.	Parent=Os01t0269100-01
Chr01	irgsp1_rep	three_prime_UTR	9273876	9274344	.	-	.	Parent=Os01t0269100-01
Chr01	irgsp1_rep	mRNA	9293193	9299711	.	+	.	ID=Os01t0269500-01;Name=Os01t0269500-01;Locus_id=Os01g0269500;Note=Conserved hypothetical protein.;Transcript_evidence=AK103817 (DDBJ%2C Best hit);ORF_evidence=B8AC93 (UniProt);NIAS_FLcDNA=J033147E22;TENOR=Os01t0269500-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	9293193	9293368	.	+	.	Parent=Os01t0269500-01
Chr01	irgsp1_rep	five_prime_UTR	9293462	9293590	.	+	.	Parent=Os01t0269500-01
Chr01	irgsp1_rep	CDS	9293591	9293629	.	+	0	Parent=Os01t0269500-01
Chr01	irgsp1_rep	CDS	9294018	9294272	.	+	0	Parent=Os01t0269500-01
Chr01	irgsp1_rep	three_prime_UTR	9294273	9294724	.	+	.	Parent=Os01t0269500-01
Chr01	irgsp1_rep	three_prime_UTR	9296238	9298210	.	+	.	Parent=Os01t0269500-01
Chr01	irgsp1_rep	three_prime_UTR	9299354	9299711	.	+	.	Parent=Os01t0269500-01
Chr01	irgsp1_rep	mRNA	9300816	9304312	.	+	.	ID=Os01t0269550-01;Name=Os01t0269550-01;Locus_id=Os01g0269550;Note=Hypothetical protein.;Transcript_evidence=AK242215 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J075172E18;TENOR=Os01t0269550-01;KEGG=Os01t0269550-01
Chr01	irgsp1_rep	five_prime_UTR	9300816	9303207	.	+	.	Parent=Os01t0269550-01
Chr01	irgsp1_rep	CDS	9303208	9303546	.	+	0	Parent=Os01t0269550-01
Chr01	irgsp1_rep	three_prime_UTR	9303547	9304312	.	+	.	Parent=Os01t0269550-01
Chr01	irgsp1_rep	mRNA	9316276	9318060	.	+	.	ID=Os01t0269800-00;Name=Os01t0269800-00;Locus_id=Os01g0269800;Note=NB-ARC domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2WNA9 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);Oryzabase=14951;TENOR=Os01t0269800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	9316276	9318060	.	+	0	Parent=Os01t0269800-00
Chr01	irgsp1_rep	mRNA	9319015	9323339	.	-	.	ID=Os01t0269900-01;Name=Os01t0269900-01;Locus_id=Os01g0269900;RAP-DB Gene Symbol Synonym(s)=OsARP6;RAP-DB Gene Name Synonym(s)=ACTIN RELATED PROTEIN 6;CGSNL Gene Symbol=ARP6;CGSNL Gene Name=ACTIN RELATED PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsARP6;Note=Key component of H2A.Z exchange complex;Transcript_evidence=AK068395;ORF_evidence=Q5NBI2;InterPro=Actin family (IPR004000);NIAS_FLcDNA=J013151C11;Manual Curation=February 25%2C 2019;Literature_PMID=29955860;Oryzabase=22637;Expression=AK068395;TENOR=Os01t0269900-01;KEGG=Os01t0269900-01
Chr01	irgsp1_rep	five_prime_UTR	9323054	9323339	.	-	.	Parent=Os01t0269900-01
Chr01	irgsp1_rep	five_prime_UTR	9322819	9322854	.	-	.	Parent=Os01t0269900-01
Chr01	irgsp1_rep	five_prime_UTR	9322661	9322736	.	-	.	Parent=Os01t0269900-01
Chr01	irgsp1_rep	five_prime_UTR	9321527	9321613	.	-	.	Parent=Os01t0269900-01
Chr01	irgsp1_rep	CDS	9320832	9321526	.	-	0	Parent=Os01t0269900-01
Chr01	irgsp1_rep	CDS	9320163	9320364	.	-	1	Parent=Os01t0269900-01
Chr01	irgsp1_rep	CDS	9320029	9320092	.	-	0	Parent=Os01t0269900-01
Chr01	irgsp1_rep	CDS	9319861	9319945	.	-	2	Parent=Os01t0269900-01
Chr01	irgsp1_rep	CDS	9319718	9319768	.	-	1	Parent=Os01t0269900-01
Chr01	irgsp1_rep	CDS	9319575	9319637	.	-	1	Parent=Os01t0269900-01
Chr01	irgsp1_rep	CDS	9319356	9319485	.	-	1	Parent=Os01t0269900-01
Chr01	irgsp1_rep	three_prime_UTR	9319015	9319355	.	-	.	Parent=Os01t0269900-01
Chr01	irgsp1_rep	mRNA	9319350	9321607	.	+	.	ID=Os01t0269950-00;Name=Os01t0269950-00;Locus_id=Os01g0269950;Note=Hypothetical protein.;Transcript_evidence=tplb0048j06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0269950-00
Chr01	irgsp1_rep	five_prime_UTR	9319350	9319511	.	+	.	Parent=Os01t0269950-00
Chr01	irgsp1_rep	five_prime_UTR	9319675	9319775	.	+	.	Parent=Os01t0269950-00
Chr01	irgsp1_rep	five_prime_UTR	9319872	9319943	.	+	.	Parent=Os01t0269950-00
Chr01	irgsp1_rep	five_prime_UTR	9320027	9320078	.	+	.	Parent=Os01t0269950-00
Chr01	irgsp1_rep	five_prime_UTR	9320150	9320348	.	+	.	Parent=Os01t0269950-00
Chr01	irgsp1_rep	five_prime_UTR	9320819	9321347	.	+	.	Parent=Os01t0269950-00
Chr01	irgsp1_rep	CDS	9321348	9321578	.	+	0	Parent=Os01t0269950-00
Chr01	irgsp1_rep	three_prime_UTR	9321579	9321607	.	+	.	Parent=Os01t0269950-00
Chr01	irgsp1_rep	mRNA	9325699	9329331	.	-	.	ID=Os01t0270100-01;Name=Os01t0270100-01;Locus_id=Os01g0270100;Oryzabase Gene Name Synonym(s)=cystatin-II%2C cystein proteinase inhibitor;Note=Similar to Cysteine protease inhibitor.;Transcript_evidence=AK119511 (DDBJ%2C Best hit),AK073275 (DDBJ%2C Best hit);ORF_evidence=Q1XHC6 (UniProt);GO=Molecular Function: cysteine-type endopeptidase inhibitor activity (GO:0004869);InterPro=Proteinase inhibitor I25%2C cystatin (IPR000010),Proteinase inhibitor I25%2C cystatin%2C conserved site (IPR018073),Proteinase inhibitor I25%2C cystatin%2C conserved region (IPR020381);NIAS_FLcDNA=001-200-C04,J033025K21;Oryzabase=12114;Expression=AK119511;TENOR=Os01t0270100-01;KEGG=Os01t0270100-01
Chr01	irgsp1_rep	five_prime_UTR	9329234	9329331	.	-	.	Parent=Os01t0270100-01
Chr01	irgsp1_rep	CDS	9329000	9329233	.	-	0	Parent=Os01t0270100-01
Chr01	irgsp1_rep	CDS	9328671	9328890	.	-	0	Parent=Os01t0270100-01
Chr01	irgsp1_rep	CDS	9326449	9326594	.	-	2	Parent=Os01t0270100-01
Chr01	irgsp1_rep	CDS	9325943	9326095	.	-	0	Parent=Os01t0270100-01
Chr01	irgsp1_rep	three_prime_UTR	9325699	9325942	.	-	.	Parent=Os01t0270100-01
Chr01	irgsp1_rep	mRNA	9325669	9329229	.	-	.	ID=Os01t0270100-02;Name=Os01t0270100-02;Locus_id=Os01g0270100;Oryzabase Gene Name Synonym(s)=cystatin-II%2C cystein proteinase inhibitor;Note=Similar to cDNA clone:001-200-C04%2C full insert sequence.;Transcript_evidence=AK104155 (DDBJ%2C Best hit);ORF_evidence=B7F4W8 (UniProt);GO=Molecular Function: cysteine-type endopeptidase inhibitor activity (GO:0004869);InterPro=Proteinase inhibitor I25%2C cystatin (IPR000010),Proteinase inhibitor I25%2C cystatin%2C conserved site (IPR018073),Proteinase inhibitor I25%2C cystatin%2C conserved region (IPR020381);NIAS_FLcDNA=006-210-B08;Oryzabase=12114;Expression=AK104155;TENOR=Os01t0270100-02;KEGG=Os01t0270100-02
Chr01	irgsp1_rep	five_prime_UTR	9329228	9329229	.	-	.	Parent=Os01t0270100-02
Chr01	irgsp1_rep	CDS	9329000	9329227	.	-	0	Parent=Os01t0270100-02
Chr01	irgsp1_rep	CDS	9328671	9328890	.	-	0	Parent=Os01t0270100-02
Chr01	irgsp1_rep	CDS	9326449	9326594	.	-	2	Parent=Os01t0270100-02
Chr01	irgsp1_rep	CDS	9325943	9326095	.	-	0	Parent=Os01t0270100-02
Chr01	irgsp1_rep	three_prime_UTR	9325669	9325942	.	-	.	Parent=Os01t0270100-02
Chr01	irgsp1_rep	mRNA	9339815	9342225	.	+	.	ID=Os01t0270300-01;Name=Os01t0270300-01;Locus_id=Os01g0270300;Oryzabase Gene Symbol Synonym(s)=prx4;Oryzabase Gene Name Synonym(s)=class III peroxidase 4;Note=Similar to Cationic peroxidase isozyme 40K precursor.;Transcript_evidence=AK101508 (DDBJ%2C Best hit);ORF_evidence=B6SRH9 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793);NIAS_FLcDNA=J033045A16;Oryzabase=14533;Expression=AK101508;TENOR=Os01t0270300-01;KEGG=Os01t0270300-01
Chr01	irgsp1_rep	five_prime_UTR	9339815	9340192	.	+	.	Parent=Os01t0270300-01
Chr01	irgsp1_rep	CDS	9340193	9340420	.	+	0	Parent=Os01t0270300-01
Chr01	irgsp1_rep	CDS	9341232	9341978	.	+	0	Parent=Os01t0270300-01
Chr01	irgsp1_rep	three_prime_UTR	9341979	9342225	.	+	.	Parent=Os01t0270300-01
Chr01	irgsp1_rep	mRNA	9340040	9342240	.	+	.	ID=Os01t0270300-02;Name=Os01t0270300-02;Locus_id=Os01g0270300;Oryzabase Gene Symbol Synonym(s)=prx4;Oryzabase Gene Name Synonym(s)=class III peroxidase 4;Note=Similar to Cationic peroxidase isozyme 40K precursor.;Transcript_evidence=AK060365 (DDBJ%2C Best hit),AK103467 (DDBJ%2C Best hit);ORF_evidence=B6SRH9 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793);NIAS_FLcDNA=001-008-H12,J033129P08;Oryzabase=14533;TENOR=Os01t0270300-02
Chr01	irgsp1_rep	five_prime_UTR	9340040	9340192	.	+	.	Parent=Os01t0270300-02
Chr01	irgsp1_rep	CDS	9340193	9340420	.	+	0	Parent=Os01t0270300-02
Chr01	irgsp1_rep	CDS	9341232	9341978	.	+	0	Parent=Os01t0270300-02
Chr01	irgsp1_rep	three_prime_UTR	9341979	9342240	.	+	.	Parent=Os01t0270300-02
Chr01	irgsp1_rep	mRNA	9341228	9341966	.	-	.	ID=Os01t0270501-00;Name=Os01t0270501-00;Locus_id=Os01g0270501;Note=Hypothetical protein.;Transcript_evidence=BT041037 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0270501-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	9341292	9341966	.	-	0	Parent=Os01t0270501-00
Chr01	irgsp1_rep	three_prime_UTR	9341228	9341291	.	-	.	Parent=Os01t0270501-00
Chr01	irgsp1_rep	mRNA	9348658	9350721	.	+	.	ID=Os01t0270700-00;Name=Os01t0270700-00;Locus_id=Os01g0270700;Note=Phosphatidylinositol 3-/4-kinase%2C catalytic domain containing protein.;Transcript_evidence=EU970327 (DDBJ);ORF_evidence=NP_001042704.2 (RefSeq);GO=Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Phosphatidylinositol 3-/4-kinase%2C catalytic (IPR000403);TENOR=Os01t0270700-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	9348658	9349048	.	+	.	Parent=Os01t0270700-00
Chr01	irgsp1_rep	CDS	9349049	9349104	.	+	0	Parent=Os01t0270700-00
Chr01	irgsp1_rep	CDS	9349216	9350440	.	+	1	Parent=Os01t0270700-00
Chr01	irgsp1_rep	CDS	9350580	9350645	.	+	0	Parent=Os01t0270700-00
Chr01	irgsp1_rep	three_prime_UTR	9350646	9350721	.	+	.	Parent=Os01t0270700-00
Chr01	irgsp1_rep	mRNA	9370627	9373600	.	+	.	ID=Os01t0271000-01;Name=Os01t0271000-01;Locus_id=Os01g0271000;Note=Conserved hypothetical protein.;Transcript_evidence=AK071543 (DDBJ%2C Best hit);ORF_evidence=B8AC97 (UniProt);NIAS_FLcDNA=J023100F02;Expression=AK071543;TENOR=Os01t0271000-01;KEGG=Os01t0271000-01
Chr01	irgsp1_rep	five_prime_UTR	9370627	9370785	.	+	.	Parent=Os01t0271000-01
Chr01	irgsp1_rep	CDS	9370786	9370807	.	+	0	Parent=Os01t0271000-01
Chr01	irgsp1_rep	CDS	9370844	9370881	.	+	2	Parent=Os01t0271000-01
Chr01	irgsp1_rep	CDS	9370956	9371093	.	+	0	Parent=Os01t0271000-01
Chr01	irgsp1_rep	CDS	9371520	9371775	.	+	0	Parent=Os01t0271000-01
Chr01	irgsp1_rep	CDS	9372577	9372654	.	+	2	Parent=Os01t0271000-01
Chr01	irgsp1_rep	CDS	9373229	9373368	.	+	2	Parent=Os01t0271000-01
Chr01	irgsp1_rep	three_prime_UTR	9373369	9373600	.	+	.	Parent=Os01t0271000-01
Chr01	irgsp1_rep	mRNA	9373756	9378200	.	-	.	ID=Os01t0271200-01;Name=Os01t0271200-01;Locus_id=Os01g0271200;CGSNL Gene Symbol=ERS2;CGSNL Gene Name=GLUTAMYL-TRNA SYNTHETASE 2;Oryzabase Gene Symbol Synonym(s)=OsERS2;Oryzabase Gene Name Synonym(s)=glutamyl-tRNA synthetase 2;Note=Similar to Glutamyl-tRNA synthetase.;Transcript_evidence=AK073797 (DDBJ%2C Best hit);ORF_evidence=Q8S5M6 (UniProt);GO=Biological Process: translation (GO:0006412),Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: glutamyl-tRNA aminoacylation (GO:0006424),Biological Process: tRNA aminoacylation (GO:0043039),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: glutamate-tRNA ligase activity (GO:0004818),Molecular Function: ATP binding (GO:0005524),Molecular Function: ligase activity%2C forming aminoacyl-tRNA and related compounds (GO:0016876);InterPro=Glutamyl/glutaminyl-tRNA synthetase%2C class Ib (IPR000924),Aminoacyl-tRNA synthetase%2C class I%2C conserved site (IPR001412),Glutamyl-tRNA synthetase%2C class Ib%2C archaeal/eukaryotic cytosolic (IPR004526),Glutathione S-transferase%2C C-terminal-like (IPR010987),Ribosomal protein L25/Gln-tRNA synthetase%2C anti-codon-binding domain (IPR011035),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Ribosomal protein L25/Gln-tRNA synthetase%2C beta-barrel domain (IPR020056),Glutamyl/glutaminyl-tRNA synthetase%2C class Ib%2C catalytic domain (IPR020058),Glutamyl/glutaminyl-tRNA synthetase%2C class Ib%2C anti-codon binding domain (IPR020059),Glutamyl/glutaminyl-tRNA synthetase%2C class Ib%2C alpha-bundle domain (IPR020061);NIAS_FLcDNA=J033067G11;Oryzabase=22417;Expression=AK073797;TENOR=Os01t0271200-01;KEGG=Os01t0271200-01 (EC:6.1.1.17)
Chr01	irgsp1_rep	five_prime_UTR	9378083	9378200	.	-	.	Parent=Os01t0271200-01
Chr01	irgsp1_rep	five_prime_UTR	9377399	9377433	.	-	.	Parent=Os01t0271200-01
Chr01	irgsp1_rep	CDS	9377262	9377398	.	-	0	Parent=Os01t0271200-01
Chr01	irgsp1_rep	CDS	9376807	9376903	.	-	1	Parent=Os01t0271200-01
Chr01	irgsp1_rep	CDS	9376558	9376711	.	-	0	Parent=Os01t0271200-01
Chr01	irgsp1_rep	CDS	9375396	9376471	.	-	2	Parent=Os01t0271200-01
Chr01	irgsp1_rep	CDS	9374838	9375302	.	-	0	Parent=Os01t0271200-01
Chr01	irgsp1_rep	CDS	9373903	9374121	.	-	0	Parent=Os01t0271200-01
Chr01	irgsp1_rep	three_prime_UTR	9373756	9373902	.	-	.	Parent=Os01t0271200-01
Chr01	irgsp1_rep	mRNA	9379123	9383262	.	-	.	ID=Os01t0271400-00;Name=Os01t0271400-00;Locus_id=Os01g0271400;CGSNL Gene Symbol=CLPR4;CGSNL Gene Name=CHLOROPLAST PROTEASE R4;Oryzabase Gene Symbol Synonym(s)=OsClpR4%2C ClpR4%2C OsClp1%2C CLP1;Oryzabase Gene Name Synonym(s)=plastidic caseinolytic protease R4%2C chloroplast Clp R4%2C Clp protease 1;Note=Peptidase S14%2C ClpP family protein.;Transcript_evidence=BT038643 (DDBJ);ORF_evidence=C5XH66 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S14%2C ClpP (IPR001907),Peptidase S14/S49 (IPR023562);Oryzabase=13369;TENOR=Os01t0271400-00;KEGG=Os01t0271400-00 (EC:3.4.21.92)
Chr01	irgsp1_rep	five_prime_UTR	9383184	9383262	.	-	.	Parent=Os01t0271400-00
Chr01	irgsp1_rep	CDS	9382938	9383183	.	-	0	Parent=Os01t0271400-00
Chr01	irgsp1_rep	CDS	9382643	9382846	.	-	0	Parent=Os01t0271400-00
Chr01	irgsp1_rep	CDS	9382202	9382257	.	-	0	Parent=Os01t0271400-00
Chr01	irgsp1_rep	CDS	9380984	9381110	.	-	1	Parent=Os01t0271400-00
Chr01	irgsp1_rep	CDS	9380665	9380742	.	-	0	Parent=Os01t0271400-00
Chr01	irgsp1_rep	CDS	9379409	9379522	.	-	0	Parent=Os01t0271400-00
Chr01	irgsp1_rep	CDS	9379254	9379325	.	-	0	Parent=Os01t0271400-00
Chr01	irgsp1_rep	three_prime_UTR	9379123	9379253	.	-	.	Parent=Os01t0271400-00
Chr01	irgsp1_rep	mRNA	9386202	9390616	.	+	.	ID=Os01t0271500-01;Name=Os01t0271500-01;Locus_id=Os01g0271500;Note=Similar to RUB-activating enzyme (Ubiquitin activating enzyme E1-like protein).;Transcript_evidence=AK101384 (DDBJ%2C Best hit),AK062561 (DDBJ%2C Best hit);ORF_evidence=B6TJH0 (UniProt);GO=Biological Process: protein modification process (GO:0006464),Biological Process: protein neddylation (GO:0045116),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524),Molecular Function: small protein activating enzyme activity (GO:0008641),Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-activating enzyme repeat (IPR000127),UBA/THIF-type NAD/FAD binding fold (IPR000594),Molybdenum cofactor biosynthesis%2C MoeB (IPR009036),E2 binding (IPR014929),NAD(P)-binding domain (IPR016040),Ubiquitin-activating enzyme%2C E1%2C active site (IPR018074),Ubiquitin-activating enzyme (IPR019572),Ubiquitin activating enzyme%2C alpha domain (IPR023318);NIAS_FLcDNA=J033036F10,001-044-G12;TENOR=Os01t0271500-01
Chr01	irgsp1_rep	five_prime_UTR	9386202	9386284	.	+	.	Parent=Os01t0271500-01
Chr01	irgsp1_rep	CDS	9386285	9386398	.	+	0	Parent=Os01t0271500-01
Chr01	irgsp1_rep	CDS	9386481	9386644	.	+	0	Parent=Os01t0271500-01
Chr01	irgsp1_rep	CDS	9387275	9387477	.	+	1	Parent=Os01t0271500-01
Chr01	irgsp1_rep	CDS	9388154	9388386	.	+	2	Parent=Os01t0271500-01
Chr01	irgsp1_rep	CDS	9388470	9388532	.	+	0	Parent=Os01t0271500-01
Chr01	irgsp1_rep	CDS	9388608	9388664	.	+	0	Parent=Os01t0271500-01
Chr01	irgsp1_rep	CDS	9389144	9389265	.	+	0	Parent=Os01t0271500-01
Chr01	irgsp1_rep	CDS	9389450	9389567	.	+	1	Parent=Os01t0271500-01
Chr01	irgsp1_rep	CDS	9390029	9390310	.	+	0	Parent=Os01t0271500-01
Chr01	irgsp1_rep	three_prime_UTR	9390311	9390616	.	+	.	Parent=Os01t0271500-01
Chr01	irgsp1_rep	mRNA	9394143	9396611	.	-	.	ID=Os01t0271700-01;Name=Os01t0271700-01;Locus_id=Os01g0271700;Note=Conserved hypothetical protein.;Transcript_evidence=AK100277 (DDBJ%2C Best hit);ORF_evidence=A2ZRN8 (UniProt);NIAS_FLcDNA=J023073H16;TENOR=Os01t0271700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	9396461	9396611	.	-	.	Parent=Os01t0271700-01
Chr01	irgsp1_rep	CDS	9396370	9396460	.	-	0	Parent=Os01t0271700-01
Chr01	irgsp1_rep	CDS	9396181	9396251	.	-	2	Parent=Os01t0271700-01
Chr01	irgsp1_rep	three_prime_UTR	9394143	9396180	.	-	.	Parent=Os01t0271700-01
Chr01	irgsp1_rep	mRNA	9424556	9429189	.	+	.	ID=Os01t0272600-01;Name=Os01t0272600-01;Locus_id=Os01g0272600;CGSNL Gene Symbol=RDN;CGSNL Gene Name=ROOT DETERMINED NODULATION;Oryzabase Gene Symbol Synonym(s)=OsRDN%2C OsRDN1%2C RDN1;Oryzabase Gene Name Synonym(s)=ROOT DETERMINED NODULATION 1;Note=Similar to Root determined nodulation 1.;Transcript_evidence=AK067786 (DDBJ%2C Best hit);ORF_evidence=E9KID2 (UniProt);NIAS_FLcDNA=J013120F01;Oryzabase=21745;Expression=AK067786;TENOR=Os01t0272600-01;KEGG=Os01t0272600-01
Chr01	irgsp1_rep	five_prime_UTR	9424556	9424633	.	+	.	Parent=Os01t0272600-01
Chr01	irgsp1_rep	CDS	9424634	9425065	.	+	0	Parent=Os01t0272600-01
Chr01	irgsp1_rep	CDS	9425678	9425745	.	+	0	Parent=Os01t0272600-01
Chr01	irgsp1_rep	CDS	9426003	9426201	.	+	1	Parent=Os01t0272600-01
Chr01	irgsp1_rep	CDS	9426373	9426470	.	+	0	Parent=Os01t0272600-01
Chr01	irgsp1_rep	CDS	9426563	9426632	.	+	1	Parent=Os01t0272600-01
Chr01	irgsp1_rep	CDS	9426751	9426822	.	+	0	Parent=Os01t0272600-01
Chr01	irgsp1_rep	CDS	9426972	9427085	.	+	0	Parent=Os01t0272600-01
Chr01	irgsp1_rep	CDS	9428710	9428775	.	+	0	Parent=Os01t0272600-01
Chr01	irgsp1_rep	three_prime_UTR	9428776	9429189	.	+	.	Parent=Os01t0272600-01
Chr01	irgsp1_rep	mRNA	9424753	9428782	.	-	.	ID=Os01t0272650-00;Name=Os01t0272650-00;Locus_id=Os01g0272650;Note=Hypothetical protein.;Transcript_evidence=tplb0025h12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0272650-00
Chr01	irgsp1_rep	five_prime_UTR	9428717	9428782	.	-	.	Parent=Os01t0272650-00
Chr01	irgsp1_rep	five_prime_UTR	9426956	9427094	.	-	.	Parent=Os01t0272650-00
Chr01	irgsp1_rep	five_prime_UTR	9426755	9426809	.	-	.	Parent=Os01t0272650-00
Chr01	irgsp1_rep	five_prime_UTR	9426557	9426640	.	-	.	Parent=Os01t0272650-00
Chr01	irgsp1_rep	five_prime_UTR	9426374	9426461	.	-	.	Parent=Os01t0272650-00
Chr01	irgsp1_rep	five_prime_UTR	9426080	9426202	.	-	.	Parent=Os01t0272650-00
Chr01	irgsp1_rep	CDS	9425916	9426079	.	-	0	Parent=Os01t0272650-00
Chr01	irgsp1_rep	CDS	9424921	9425044	.	-	1	Parent=Os01t0272650-00
Chr01	irgsp1_rep	three_prime_UTR	9424753	9424920	.	-	.	Parent=Os01t0272650-00
Chr01	irgsp1_rep	mRNA	9429955	9430747	.	-	.	ID=Os01t0272700-00;Name=Os01t0272700-00;Locus_id=Os01g0272700;CGSNL Gene Symbol=ENODL3;CGSNL Gene Name=EARLY NODULIN LIKE PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsENODL3;Oryzabase Gene Name Synonym(s)=early nodulin-like protein 3;Note=Hypothetical conserved gene.;Transcript_evidence=AK248395 (DDBJ);ORF_evidence=NP_001150380.1 (RefSeq);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);Oryzabase=9728;TENOR=Os01t0272700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	9430462	9430747	.	-	0	Parent=Os01t0272700-00
Chr01	irgsp1_rep	CDS	9429955	9430343	.	-	2	Parent=Os01t0272700-00
Chr01	irgsp1_rep	mRNA	9431735	9434046	.	-	.	ID=Os01t0272800-01;Name=Os01t0272800-01;Locus_id=Os01g0272800;Note=Conserved hypothetical protein.;Transcript_evidence=AK242815 (DDBJ%2C Best hit);ORF_evidence=B9EV58 (UniProt);NIAS_FLcDNA=J090061O05;TENOR=Os01t0272800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	9434046	9434046	.	-	.	Parent=Os01t0272800-01
Chr01	irgsp1_rep	CDS	9433935	9434045	.	-	0	Parent=Os01t0272800-01
Chr01	irgsp1_rep	CDS	9432814	9432953	.	-	0	Parent=Os01t0272800-01
Chr01	irgsp1_rep	CDS	9432620	9432717	.	-	1	Parent=Os01t0272800-01
Chr01	irgsp1_rep	CDS	9432128	9432252	.	-	2	Parent=Os01t0272800-01
Chr01	irgsp1_rep	CDS	9431882	9432037	.	-	0	Parent=Os01t0272800-01
Chr01	irgsp1_rep	three_prime_UTR	9431735	9431881	.	-	.	Parent=Os01t0272800-01
Chr01	irgsp1_rep	mRNA	9431788	9435864	.	+	.	ID=Os01t0272850-00;Name=Os01t0272850-00;Locus_id=Os01g0272850;Note=Hypothetical protein.;Transcript_evidence=tplb0032i05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0272850-00
Chr01	irgsp1_rep	five_prime_UTR	9431788	9432035	.	+	.	Parent=Os01t0272850-00
Chr01	irgsp1_rep	five_prime_UTR	9432126	9432243	.	+	.	Parent=Os01t0272850-00
Chr01	irgsp1_rep	five_prime_UTR	9432611	9432714	.	+	.	Parent=Os01t0272850-00
Chr01	irgsp1_rep	five_prime_UTR	9432807	9432942	.	+	.	Parent=Os01t0272850-00
Chr01	irgsp1_rep	five_prime_UTR	9433922	9434136	.	+	.	Parent=Os01t0272850-00
Chr01	irgsp1_rep	five_prime_UTR	9434238	9434309	.	+	.	Parent=Os01t0272850-00
Chr01	irgsp1_rep	five_prime_UTR	9435351	9435554	.	+	.	Parent=Os01t0272850-00
Chr01	irgsp1_rep	CDS	9435555	9435864	.	+	0	Parent=Os01t0272850-00
Chr01	irgsp1_rep	mRNA	9438930	9439364	.	+	.	ID=Os01t0272901-00;Name=Os01t0272901-00;Locus_id=Os01g0272901;Note=Conserved hypothetical protein.;Transcript_evidence=AK362999 (DDBJ);ORF_evidence=Q5NBG1 (UniProt);TENOR=Os01t0272901-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	9438930	9439268	.	+	0	Parent=Os01t0272901-00
Chr01	irgsp1_rep	three_prime_UTR	9439269	9439364	.	+	.	Parent=Os01t0272901-00
Chr01	irgsp1_rep	mRNA	9441654	9444212	.	-	.	ID=Os01t0273000-01;Name=Os01t0273000-01;Locus_id=Os01g0273000;Oryzabase Gene Symbol Synonym(s)=DSS1/SEM1%2C DSS1%2C SEM1;Note=Similar to 26 proteasome complex subunit DSS1 (Deleted in split hand/split foot protein 1) (Split hand/foot deleted protein 1).;Transcript_evidence=AK243525 (DDBJ%2C Best hit);ORF_evidence=B6TGR7 (UniProt);InterPro=DSS1/SEM1 (IPR007834);NIAS_FLcDNA=J100075O07;Oryzabase=11620;TENOR=Os01t0273000-01;KEGG=Os01t0273000-01
Chr01	irgsp1_rep	five_prime_UTR	9444153	9444212	.	-	.	Parent=Os01t0273000-01
Chr01	irgsp1_rep	five_prime_UTR	9444011	9444034	.	-	.	Parent=Os01t0273000-01
Chr01	irgsp1_rep	CDS	9443914	9444010	.	-	0	Parent=Os01t0273000-01
Chr01	irgsp1_rep	CDS	9441829	9441962	.	-	2	Parent=Os01t0273000-01
Chr01	irgsp1_rep	three_prime_UTR	9441654	9441828	.	-	.	Parent=Os01t0273000-01
Chr01	irgsp1_rep	mRNA	9445685	9446494	.	+	.	ID=Os01t0273100-01;Name=Os01t0273100-01;Locus_id=Os01g0273100;CGSNL Gene Symbol=UBC27;CGSNL Gene Name=UBIQUITIN-CONJUGATING ENZYME 27;Oryzabase Gene Symbol Synonym(s)=OsUBC27;Oryzabase Gene Name Synonym(s)=Ubiquitin-conjugating enzyme 27;Note=Similar to Ubiquitin conjugating protein-like (Ubiquitin-conjugating enzyme) (Ubiquitinating enzyme).;Transcript_evidence=AK105320 (DDBJ%2C Best hit);ORF_evidence=NP_001149453.1 (RefSeq);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135),Ubiquitin-conjugating enzyme%2C active site (IPR023313);NIAS_FLcDNA=001-117-G01;Oryzabase=19567;Expression=AK105320;TENOR=Os01t0273100-01;KEGG=Os01t0273100-01 (EC:6.3.2.19)
Chr01	irgsp1_rep	five_prime_UTR	9445685	9445765	.	+	.	Parent=Os01t0273100-01
Chr01	irgsp1_rep	CDS	9445766	9446341	.	+	0	Parent=Os01t0273100-01
Chr01	irgsp1_rep	three_prime_UTR	9446342	9446494	.	+	.	Parent=Os01t0273100-01
Chr01	irgsp1_rep	mRNA	9447054	9450883	.	+	.	ID=Os01t0273150-00;Name=Os01t0273150-00;Locus_id=Os01g0273150;Note=Hypothetical gene.;Transcript_evidence=CU861759 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os01t0273150-00;KEGG=Os01t0273150-00
Chr01	irgsp1_rep	five_prime_UTR	9447054	9447390	.	+	.	Parent=Os01t0273150-00
Chr01	irgsp1_rep	five_prime_UTR	9448639	9448641	.	+	.	Parent=Os01t0273150-00
Chr01	irgsp1_rep	CDS	9448642	9448706	.	+	0	Parent=Os01t0273150-00
Chr01	irgsp1_rep	CDS	9450590	9450767	.	+	1	Parent=Os01t0273150-00
Chr01	irgsp1_rep	three_prime_UTR	9450768	9450883	.	+	.	Parent=Os01t0273150-00
Chr01	irgsp1_rep	mRNA	9447788	9450787	.	-	.	ID=Os01t0273200-00;Name=Os01t0273200-00;Locus_id=Os01g0273200;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2YSX7 (UniProt);TENOR=Os01t0273200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	9450566	9450787	.	-	0	Parent=Os01t0273200-00
Chr01	irgsp1_rep	CDS	9450003	9450089	.	-	0	Parent=Os01t0273200-00
Chr01	irgsp1_rep	CDS	9448594	9448681	.	-	0	Parent=Os01t0273200-00
Chr01	irgsp1_rep	CDS	9448331	9448462	.	-	2	Parent=Os01t0273200-00
Chr01	irgsp1_rep	CDS	9448054	9448256	.	-	2	Parent=Os01t0273200-00
Chr01	irgsp1_rep	CDS	9447788	9447967	.	-	0	Parent=Os01t0273200-00
Chr01	irgsp1_rep	mRNA	9454976	9456923	.	+	.	ID=Os01t0273300-01;Name=Os01t0273300-01;Locus_id=Os01g0273300;Note=BSD domain containing protein.;Transcript_evidence=AK288570 (DDBJ%2C Best hit);ORF_evidence=NP_001042714.1 (RefSeq);InterPro=BSD (IPR005607);NIAS_FLcDNA=J090048E02;TENOR=Os01t0273300-01;KEGG=Os01t0273300-01
Chr01	irgsp1_rep	five_prime_UTR	9454976	9455065	.	+	.	Parent=Os01t0273300-01
Chr01	irgsp1_rep	CDS	9455066	9456679	.	+	0	Parent=Os01t0273300-01
Chr01	irgsp1_rep	three_prime_UTR	9456680	9456923	.	+	.	Parent=Os01t0273300-01
Chr01	irgsp1_rep	mRNA	9470130	9475187	.	+	.	ID=Os01t0273500-01;Name=Os01t0273500-01;Locus_id=Os01g0273500;Note=Heat shock protein DnaJ%2C N-terminal domain containing protein.;Transcript_evidence=AK069401 (DDBJ%2C Best hit);ORF_evidence=B9EV60 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Tetratricopeptide TPR-1 (IPR001440),Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734),Elongated TPR repeat-containing domain (IPR023114);NIAS_FLcDNA=J023014J19;Expression=AK069401;TENOR=Os01t0273500-01;KEGG=Os01t0273500-01
Chr01	irgsp1_rep	five_prime_UTR	9470130	9470130	.	+	.	Parent=Os01t0273500-01
Chr01	irgsp1_rep	CDS	9470131	9470247	.	+	0	Parent=Os01t0273500-01
Chr01	irgsp1_rep	CDS	9470350	9470421	.	+	0	Parent=Os01t0273500-01
Chr01	irgsp1_rep	CDS	9470677	9470883	.	+	0	Parent=Os01t0273500-01
Chr01	irgsp1_rep	CDS	9471308	9471537	.	+	0	Parent=Os01t0273500-01
Chr01	irgsp1_rep	CDS	9472559	9472637	.	+	1	Parent=Os01t0273500-01
Chr01	irgsp1_rep	CDS	9472713	9472855	.	+	0	Parent=Os01t0273500-01
Chr01	irgsp1_rep	CDS	9474394	9474394	.	+	1	Parent=Os01t0273500-01
Chr01	irgsp1_rep	three_prime_UTR	9474395	9474664	.	+	.	Parent=Os01t0273500-01
Chr01	irgsp1_rep	three_prime_UTR	9474779	9475187	.	+	.	Parent=Os01t0273500-01
Chr01	irgsp1_rep	mRNA	9488825	9493964	.	+	.	ID=Os01t0273800-01;Name=Os01t0273800-01;Locus_id=Os01g0273800;CGSNL Gene Symbol=YUCCA9;CGSNL Gene Name=YUCCA-LIKE GENE 9;Oryzabase Gene Symbol Synonym(s)=OsYUCCA9%2C OsYUC9%2C YUC9;Oryzabase Gene Name Synonym(s)=(YUCCA-like gene);Note=FAD-dependent pyridine nucleotide-disulphide oxidoreductase domain containing protein.;Transcript_evidence=AK109645 (DDBJ%2C Best hit);ORF_evidence=NP_001147115.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: flavin-containing monooxygenase activity (GO:0004499),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=Pyridine nucleotide-disulphide oxidoreductase%2C class-II (IPR000103),FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR013027),Flavin monooxygenase-like (IPR020946);NIAS_FLcDNA=002-138-H02;Oryzabase=8179;Expression=AK109645;TENOR=Os01t0273800-01;KEGG=Os01t0273800-01
Chr01	irgsp1_rep	five_prime_UTR	9488825	9488858	.	+	.	Parent=Os01t0273800-01
Chr01	irgsp1_rep	CDS	9488859	9489491	.	+	0	Parent=Os01t0273800-01
Chr01	irgsp1_rep	CDS	9492630	9492989	.	+	0	Parent=Os01t0273800-01
Chr01	irgsp1_rep	CDS	9493608	9493811	.	+	0	Parent=Os01t0273800-01
Chr01	irgsp1_rep	three_prime_UTR	9493812	9493964	.	+	.	Parent=Os01t0273800-01
Chr01	irgsp1_rep	mRNA	9492587	9492992	.	-	.	ID=Os01t0273850-00;Name=Os01t0273850-00;Locus_id=Os01g0273850;Note=Hypothetical gene.;Transcript_evidence=EU972174 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0273850-00;KEGG=Os01t0273850-00
Chr01	irgsp1_rep	CDS	9492612	9492992	.	-	0	Parent=Os01t0273850-00
Chr01	irgsp1_rep	three_prime_UTR	9492587	9492611	.	-	.	Parent=Os01t0273850-00
Chr01	irgsp1_rep	mRNA	9495603	9502985	.	+	.	ID=Os01t0273900-00;Name=Os01t0273900-00;Locus_id=Os01g0273900;Oryzabase Gene Name Synonym(s)=ulp1 protein;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8GS02 (UniProt);Oryzabase=21883;TENOR=Os01t0273900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	9495603	9495632	.	+	0	Parent=Os01t0273900-00
Chr01	irgsp1_rep	CDS	9496777	9496872	.	+	0	Parent=Os01t0273900-00
Chr01	irgsp1_rep	CDS	9496988	9497089	.	+	0	Parent=Os01t0273900-00
Chr01	irgsp1_rep	CDS	9497210	9497332	.	+	0	Parent=Os01t0273900-00
Chr01	irgsp1_rep	CDS	9498407	9498623	.	+	0	Parent=Os01t0273900-00
Chr01	irgsp1_rep	CDS	9498754	9498836	.	+	2	Parent=Os01t0273900-00
Chr01	irgsp1_rep	CDS	9499118	9499166	.	+	0	Parent=Os01t0273900-00
Chr01	irgsp1_rep	CDS	9499292	9499530	.	+	2	Parent=Os01t0273900-00
Chr01	irgsp1_rep	CDS	9500025	9500096	.	+	0	Parent=Os01t0273900-00
Chr01	irgsp1_rep	CDS	9500172	9500282	.	+	0	Parent=Os01t0273900-00
Chr01	irgsp1_rep	CDS	9500409	9500761	.	+	0	Parent=Os01t0273900-00
Chr01	irgsp1_rep	CDS	9502928	9502985	.	+	1	Parent=Os01t0273900-00
Chr01	irgsp1_rep	mRNA	9512985	9515102	.	+	.	ID=Os01t0274100-00;Name=Os01t0274100-00;Locus_id=Os01g0274100;CGSNL Gene Symbol=YUCCA10;CGSNL Gene Name=YUCCA-LIKE GENE 10;Oryzabase Gene Symbol Synonym(s)=OsYUCCA10%2C OsYUC10;Note=Similar to disulfide oxidoreductase/ monooxygenase/ oxidoreductase.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001147115.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: flavin-containing monooxygenase activity (GO:0004499),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=Pyridine nucleotide-disulphide oxidoreductase%2C class-II (IPR000103),FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR013027),Flavin monooxygenase-like (IPR020946);Oryzabase=9108;TENOR=Os01t0274100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	9512985	9514001	.	+	0	Parent=Os01t0274100-00
Chr01	irgsp1_rep	CDS	9514884	9515102	.	+	0	Parent=Os01t0274100-00
Chr01	irgsp1_rep	mRNA	9513637	9514004	.	-	.	ID=Os01t0274201-00;Name=Os01t0274201-00;Locus_id=Os01g0274201;Note=Hypothetical gene.;Transcript_evidence=EU972174 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0274201-00
Chr01	irgsp1_rep	CDS	9513637	9514004	.	-	0	Parent=Os01t0274201-00
Chr01	irgsp1_rep	mRNA	9519722	9520278	.	+	.	ID=Os01t0274300-01;Name=Os01t0274300-01;Locus_id=Os01g0274300;Note=Hypothetical protein.;Transcript_evidence=AK107917 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=002-134-G12;TENOR=Os01t0274300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	9519722	9519849	.	+	.	Parent=Os01t0274300-01
Chr01	irgsp1_rep	CDS	9519850	9520197	.	+	0	Parent=Os01t0274300-01
Chr01	irgsp1_rep	three_prime_UTR	9520198	9520278	.	+	.	Parent=Os01t0274300-01
Chr01	irgsp1_rep	mRNA	9526187	9526984	.	+	.	ID=Os01t0274500-00;Name=Os01t0274500-00;Locus_id=Os01g0274500;CGSNL Gene Symbol=EXPA11;CGSNL Gene Name=ALPHA-EXPANSIN 11;Oryzabase Gene Symbol Synonym(s)=OsEXPA11%2C OsEXP11%2C osaEXPa1.25;Oryzabase Gene Name Synonym(s)=expansin A11%2C Rice expansin-11%2C Expansin-A11%2C Alpha-expansin-11;Note=Similar to Expansin-A11.;Transcript_evidence=DQ062981 (DDBJ%2C Best hit);ORF_evidence=Q4PNY1 (UniProt);GO=Biological Process: plant-type cell wall organization (GO:0009664),Cellular Component: extracellular region (GO:0005576);InterPro=Expansin (IPR002963),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);Oryzabase=9374;TENOR=Os01t0274500-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	9526187	9526219	.	+	.	Parent=Os01t0274500-00
Chr01	irgsp1_rep	CDS	9526220	9526924	.	+	0	Parent=Os01t0274500-00
Chr01	irgsp1_rep	three_prime_UTR	9526925	9526984	.	+	.	Parent=Os01t0274500-00
Chr01	irgsp1_rep	mRNA	9558283	9563016	.	+	.	ID=Os01t0274601-01;Name=Os01t0274601-01;Locus_id=Os01g0274601;Note=Hypothetical gene.;Transcript_evidence=AK288319 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090021O08;TENOR=Os01t0274601-01;KEGG=Os01t0274601-01
Chr01	irgsp1_rep	five_prime_UTR	9558283	9561903	.	+	.	Parent=Os01t0274601-01
Chr01	irgsp1_rep	CDS	9561904	9562179	.	+	0	Parent=Os01t0274601-01
Chr01	irgsp1_rep	three_prime_UTR	9562180	9563016	.	+	.	Parent=Os01t0274601-01
Chr01	irgsp1_rep	mRNA	9567528	9569192	.	-	.	ID=Os01t0274800-01;Name=Os01t0274800-01;Locus_id=Os01g0274800;RAP-DB Gene Symbol Synonym(s)=CSA%2C csa;RAP-DB Gene Name Synonym(s)=CARBON STARVED ANTHER;CGSNL Gene Symbol=CSA;CGSNL Gene Name=CARBON STARVED ANTHER;Oryzabase Gene Symbol Synonym(s)=csa%2C OsCSA;Note=R2R3-type MYB transcription factor%2C Sugar partitioning into anther;Transcript_evidence=AK107461 (Genbank);ORF_evidence=Q5NBM8 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=002-129-A05;Manual Curation=May 12%2C 2010;Literature_PMID=20305120;Oryzabase=8785;Expression=AK107461;TENOR=Os01t0274800-01;KEGG=Os01t0274800-01
Chr01	irgsp1_rep	five_prime_UTR	9569145	9569192	.	-	.	Parent=Os01t0274800-01
Chr01	irgsp1_rep	CDS	9568895	9569144	.	-	0	Parent=Os01t0274800-01
Chr01	irgsp1_rep	CDS	9568341	9568813	.	-	2	Parent=Os01t0274800-01
Chr01	irgsp1_rep	CDS	9568047	9568121	.	-	0	Parent=Os01t0274800-01
Chr01	irgsp1_rep	three_prime_UTR	9567528	9568046	.	-	.	Parent=Os01t0274800-01
Chr01	irgsp1_rep	mRNA	9586809	9593449	.	+	.	ID=Os01t0274901-01;Name=Os01t0274901-01;Locus_id=Os01g0274901;Note=Hypothetical conserved gene.;Transcript_evidence=AK288230 (DDBJ%2C Best hit);ORF_evidence=Q5NBM7 (UniProt);NIAS_FLcDNA=J090012M14;TENOR=Os01t0274901-01;KEGG=Os01t0274901-01
Chr01	irgsp1_rep	five_prime_UTR	9586809	9591374	.	+	.	Parent=Os01t0274901-01
Chr01	irgsp1_rep	CDS	9591375	9591584	.	+	0	Parent=Os01t0274901-01
Chr01	irgsp1_rep	three_prime_UTR	9591585	9593449	.	+	.	Parent=Os01t0274901-01
Chr01	irgsp1_rep	mRNA	9613644	9619072	.	-	.	ID=Os01t0275200-00;Name=Os01t0275200-00;Locus_id=Os01g0275200;CGSNL Gene Symbol=AGO15;CGSNL Gene Name=ARGONAUTE 15;Oryzabase Gene Symbol Synonym(s)=OsAGO15;Oryzabase Gene Name Synonym(s)=Protein argonaute 15;Note=Similar to Protein argonaute 15.;Transcript_evidence=tplb0010e10 (Wheat FLcDNA);ORF_evidence=Q5NBN9 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515);InterPro=Argonaute/Dicer protein%2C PAZ (IPR003100),Stem cell self-renewal protein Piwi (IPR003165),Ribonuclease H-like (IPR012337);Oryzabase=8264;TENOR=Os01t0275200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	9618855	9619072	.	-	0	Parent=Os01t0275200-00
Chr01	irgsp1_rep	CDS	9618610	9618775	.	-	1	Parent=Os01t0275200-00
Chr01	irgsp1_rep	CDS	9618397	9618513	.	-	0	Parent=Os01t0275200-00
Chr01	irgsp1_rep	CDS	9618202	9618309	.	-	0	Parent=Os01t0275200-00
Chr01	irgsp1_rep	CDS	9618040	9618102	.	-	0	Parent=Os01t0275200-00
Chr01	irgsp1_rep	CDS	9617830	9617943	.	-	0	Parent=Os01t0275200-00
Chr01	irgsp1_rep	CDS	9617597	9617756	.	-	0	Parent=Os01t0275200-00
Chr01	irgsp1_rep	CDS	9617397	9617509	.	-	2	Parent=Os01t0275200-00
Chr01	irgsp1_rep	CDS	9617161	9617298	.	-	0	Parent=Os01t0275200-00
Chr01	irgsp1_rep	CDS	9615977	9616104	.	-	0	Parent=Os01t0275200-00
Chr01	irgsp1_rep	CDS	9615789	9615855	.	-	1	Parent=Os01t0275200-00
Chr01	irgsp1_rep	CDS	9615576	9615587	.	-	0	Parent=Os01t0275200-00
Chr01	irgsp1_rep	three_prime_UTR	9615502	9615575	.	-	.	Parent=Os01t0275200-00
Chr01	irgsp1_rep	three_prime_UTR	9615270	9615370	.	-	.	Parent=Os01t0275200-00
Chr01	irgsp1_rep	three_prime_UTR	9615080	9615153	.	-	.	Parent=Os01t0275200-00
Chr01	irgsp1_rep	three_prime_UTR	9614104	9614198	.	-	.	Parent=Os01t0275200-00
Chr01	irgsp1_rep	three_prime_UTR	9613932	9613963	.	-	.	Parent=Os01t0275200-00
Chr01	irgsp1_rep	three_prime_UTR	9613644	9613820	.	-	.	Parent=Os01t0275200-00
Chr01	irgsp1_rep	mRNA	9625243	9625889	.	+	.	ID=Os01t0275300-01;Name=Os01t0275300-01;Locus_id=Os01g0275300;Note=Conserved hypothetical protein.;Transcript_evidence=AK058411 (DDBJ%2C Best hit);ORF_evidence=B9GE74 (UniProt);NIAS_FLcDNA=001-015-C09;TENOR=Os01t0275300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	9625243	9625469	.	+	.	Parent=Os01t0275300-01
Chr01	irgsp1_rep	five_prime_UTR	9625553	9625571	.	+	.	Parent=Os01t0275300-01
Chr01	irgsp1_rep	CDS	9625572	9625634	.	+	0	Parent=Os01t0275300-01
Chr01	irgsp1_rep	three_prime_UTR	9625635	9625889	.	+	.	Parent=Os01t0275300-01
Chr01	irgsp1_rep	mRNA	9626942	9630057	.	-	.	ID=Os01t0275500-00;Name=Os01t0275500-00;Locus_id=Os01g0275500;Note=Similar to Protein argonaute 15.;Transcript_evidence=CT834817 (DDBJ%2C Best hit);ORF_evidence=Q5NBN9 (UniProt);TENOR=Os01t0275500-00;KEGG=Os01t0275500-00
Chr01	irgsp1_rep	five_prime_UTR	9628233	9630057	.	-	.	Parent=Os01t0275500-00
Chr01	irgsp1_rep	CDS	9628065	9628232	.	-	0	Parent=Os01t0275500-00
Chr01	irgsp1_rep	CDS	9627733	9627941	.	-	0	Parent=Os01t0275500-00
Chr01	irgsp1_rep	CDS	9627179	9627410	.	-	1	Parent=Os01t0275500-00
Chr01	irgsp1_rep	three_prime_UTR	9626942	9627178	.	-	.	Parent=Os01t0275500-00
Chr01	irgsp1_rep	mRNA	9631356	9638881	.	-	.	ID=Os01t0275600-01;Name=Os01t0275600-01;Locus_id=Os01g0275600;CGSNL Gene Symbol=AGO4A;CGSNL Gene Name=ARGONAUTE 4A;Oryzabase Gene Symbol Synonym(s)=OsAGO4a%2C AGO4-2;Oryzabase Gene Name Synonym(s)=Protein argonaute 4A;Note=Similar to Argonaute 4 protein.;Transcript_evidence=AK064813 (DDBJ%2C Best hit),AK121307 (DDBJ%2C Best hit);ORF_evidence=Q9SDG8 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515);InterPro=Argonaute/Dicer protein%2C PAZ (IPR003100),Stem cell self-renewal protein Piwi (IPR003165),Ribonuclease H-like (IPR012337),Domain of unknown function DUF1785 (IPR014811);NIAS_FLcDNA=J013000E08,J023111L20;Oryzabase=8274;TENOR=Os01t0275600-01
Chr01	irgsp1_rep	five_prime_UTR	9638773	9638881	.	-	.	Parent=Os01t0275600-01
Chr01	irgsp1_rep	five_prime_UTR	9637832	9637869	.	-	.	Parent=Os01t0275600-01
Chr01	irgsp1_rep	five_prime_UTR	9637169	9637180	.	-	.	Parent=Os01t0275600-01
Chr01	irgsp1_rep	CDS	9636947	9637168	.	-	0	Parent=Os01t0275600-01
Chr01	irgsp1_rep	CDS	9636649	9636854	.	-	0	Parent=Os01t0275600-01
Chr01	irgsp1_rep	CDS	9636333	9636554	.	-	1	Parent=Os01t0275600-01
Chr01	irgsp1_rep	CDS	9636078	9636214	.	-	1	Parent=Os01t0275600-01
Chr01	irgsp1_rep	CDS	9635876	9635973	.	-	2	Parent=Os01t0275600-01
Chr01	irgsp1_rep	CDS	9635670	9635767	.	-	0	Parent=Os01t0275600-01
Chr01	irgsp1_rep	CDS	9635367	9635529	.	-	1	Parent=Os01t0275600-01
Chr01	irgsp1_rep	CDS	9635167	9635283	.	-	0	Parent=Os01t0275600-01
Chr01	irgsp1_rep	CDS	9634977	9635084	.	-	0	Parent=Os01t0275600-01
Chr01	irgsp1_rep	CDS	9634815	9634877	.	-	0	Parent=Os01t0275600-01
Chr01	irgsp1_rep	CDS	9634612	9634725	.	-	0	Parent=Os01t0275600-01
Chr01	irgsp1_rep	CDS	9634330	9634495	.	-	0	Parent=Os01t0275600-01
Chr01	irgsp1_rep	CDS	9634139	9634251	.	-	2	Parent=Os01t0275600-01
Chr01	irgsp1_rep	CDS	9633908	9634045	.	-	0	Parent=Os01t0275600-01
Chr01	irgsp1_rep	CDS	9633420	9633550	.	-	0	Parent=Os01t0275600-01
Chr01	irgsp1_rep	CDS	9633234	9633299	.	-	1	Parent=Os01t0275600-01
Chr01	irgsp1_rep	CDS	9632991	9633054	.	-	1	Parent=Os01t0275600-01
Chr01	irgsp1_rep	CDS	9632756	9632867	.	-	0	Parent=Os01t0275600-01
Chr01	irgsp1_rep	CDS	9632593	9632666	.	-	2	Parent=Os01t0275600-01
Chr01	irgsp1_rep	CDS	9631918	9632012	.	-	0	Parent=Os01t0275600-01
Chr01	irgsp1_rep	CDS	9631798	9631829	.	-	1	Parent=Os01t0275600-01
Chr01	irgsp1_rep	CDS	9631530	9631705	.	-	2	Parent=Os01t0275600-01
Chr01	irgsp1_rep	three_prime_UTR	9631356	9631529	.	-	.	Parent=Os01t0275600-01
Chr01	irgsp1_rep	mRNA	9631334	9633056	.	-	.	ID=Os01t0275600-02;Name=Os01t0275600-02;Locus_id=Os01g0275600;CGSNL Gene Symbol=AGO4A;CGSNL Gene Name=ARGONAUTE 4A;Oryzabase Gene Symbol Synonym(s)=OsAGO4a%2C AGO4-2;Oryzabase Gene Name Synonym(s)=Protein argonaute 4A;Note=Similar to Protein argonaute 4A.;Transcript_evidence=AK061675 (DDBJ%2C Best hit);ORF_evidence=Q9SDG8 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515);InterPro=Stem cell self-renewal protein Piwi (IPR003165),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=001-036-H03;Oryzabase=8274;Expression=AK061675;TENOR=Os01t0275600-02;KEGG=Os01t0275600-02
Chr01	irgsp1_rep	CDS	9632991	9633056	.	-	0	Parent=Os01t0275600-02
Chr01	irgsp1_rep	CDS	9632756	9632867	.	-	0	Parent=Os01t0275600-02
Chr01	irgsp1_rep	CDS	9632593	9632666	.	-	2	Parent=Os01t0275600-02
Chr01	irgsp1_rep	CDS	9631918	9632012	.	-	0	Parent=Os01t0275600-02
Chr01	irgsp1_rep	CDS	9631798	9631829	.	-	1	Parent=Os01t0275600-02
Chr01	irgsp1_rep	CDS	9631530	9631705	.	-	2	Parent=Os01t0275600-02
Chr01	irgsp1_rep	three_prime_UTR	9631334	9631529	.	-	.	Parent=Os01t0275600-02
Chr01	irgsp1_rep	mRNA	9642417	9642487	.	-	.	ID=Os01t0275700-00;Name=Os01t0275700-00;Locus_id=Os01g0275700;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0275700-00
Chr01	irgsp1_rep	exon	9642417	9642487	.	-	.	Parent=Os01t0275700-00
Chr01	irgsp1_rep	mRNA	9644431	9653253	.	+	.	ID=Os01t0275800-01;Name=Os01t0275800-01;Locus_id=Os01g0275800;Note=Hypothetical gene.;Transcript_evidence=AK119475 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-134-B05;Expression=AK119475;TENOR=Os01t0275800-01;KEGG=Os01t0275800-01
Chr01	irgsp1_rep	five_prime_UTR	9644431	9644432	.	+	.	Parent=Os01t0275800-01
Chr01	irgsp1_rep	CDS	9644433	9644647	.	+	0	Parent=Os01t0275800-01
Chr01	irgsp1_rep	CDS	9648203	9648251	.	+	1	Parent=Os01t0275800-01
Chr01	irgsp1_rep	three_prime_UTR	9648252	9648327	.	+	.	Parent=Os01t0275800-01
Chr01	irgsp1_rep	three_prime_UTR	9651072	9651246	.	+	.	Parent=Os01t0275800-01
Chr01	irgsp1_rep	three_prime_UTR	9651320	9651478	.	+	.	Parent=Os01t0275800-01
Chr01	irgsp1_rep	three_prime_UTR	9651570	9651760	.	+	.	Parent=Os01t0275800-01
Chr01	irgsp1_rep	three_prime_UTR	9652172	9652435	.	+	.	Parent=Os01t0275800-01
Chr01	irgsp1_rep	three_prime_UTR	9652934	9653253	.	+	.	Parent=Os01t0275800-01
Chr01	irgsp1_rep	mRNA	9644443	9647828	.	-	.	ID=Os01t0275900-00;Name=Os01t0275900-00;Locus_id=Os01g0275900;Note=Hypothetical conserved gene.;Transcript_evidence=BT086478 (DDBJ);ORF_evidence=NP_001042723.2 (RefSeq);TENOR=Os01t0275900-00;KEGG=Os01t0275900-00
Chr01	irgsp1_rep	CDS	9647621	9647828	.	-	0	Parent=Os01t0275900-00
Chr01	irgsp1_rep	CDS	9646183	9647018	.	-	2	Parent=Os01t0275900-00
Chr01	irgsp1_rep	CDS	9644929	9645513	.	-	0	Parent=Os01t0275900-00
Chr01	irgsp1_rep	CDS	9644443	9644829	.	-	0	Parent=Os01t0275900-00
Chr01	irgsp1_rep	mRNA	9648667	9651434	.	-	.	ID=Os01t0275950-00;Name=Os01t0275950-00;Locus_id=Os01g0275950;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001042723.2 (RefSeq);TENOR=Os01t0275950-00;KEGG=Os01t0275950-00
Chr01	irgsp1_rep	CDS	9650859	9651434	.	-	0	Parent=Os01t0275950-00
Chr01	irgsp1_rep	CDS	9650301	9650437	.	-	0	Parent=Os01t0275950-00
Chr01	irgsp1_rep	CDS	9650146	9650208	.	-	1	Parent=Os01t0275950-00
Chr01	irgsp1_rep	CDS	9649455	9649544	.	-	1	Parent=Os01t0275950-00
Chr01	irgsp1_rep	CDS	9648667	9648787	.	-	1	Parent=Os01t0275950-00
Chr01	irgsp1_rep	mRNA	9658174	9661275	.	-	.	ID=Os01t0276000-01;Name=Os01t0276000-01;Locus_id=Os01g0276000;Note=Similar to 60S ribosomal protein L30.;Transcript_evidence=AK058917 (DDBJ%2C Best hit),AK119715 (DDBJ%2C Best hit),AK122128 (DDBJ%2C Best hit);ORF_evidence=Q9SDG6 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L30e (IPR000231),Ribosomal protein L7Ae/L30e/S12e/Gadd45 (IPR004038),Ribosomal protein L30e%2C conserved site (IPR022991);NIAS_FLcDNA=001-009-A11,002-157-F08,J033132L17;Expression=AK058917;TENOR=Os01t0276000-01;KEGG=Os01t0276000-01
Chr01	irgsp1_rep	five_prime_UTR	9661190	9661275	.	-	.	Parent=Os01t0276000-01
Chr01	irgsp1_rep	CDS	9661169	9661189	.	-	0	Parent=Os01t0276000-01
Chr01	irgsp1_rep	CDS	9660919	9661024	.	-	0	Parent=Os01t0276000-01
Chr01	irgsp1_rep	CDS	9658946	9659047	.	-	2	Parent=Os01t0276000-01
Chr01	irgsp1_rep	CDS	9658509	9658577	.	-	2	Parent=Os01t0276000-01
Chr01	irgsp1_rep	CDS	9658382	9658419	.	-	2	Parent=Os01t0276000-01
Chr01	irgsp1_rep	three_prime_UTR	9658174	9658381	.	-	.	Parent=Os01t0276000-01
Chr01	irgsp1_rep	mRNA	9658501	9661024	.	+	.	ID=Os01t0276033-00;Name=Os01t0276033-00;Locus_id=Os01g0276033;Note=Non-protein coding transcript.;Transcript_evidence=AF366453 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0276033-00
Chr01	irgsp1_rep	exon	9658501	9658558	.	+	.	Parent=Os01t0276033-00
Chr01	irgsp1_rep	exon	9658929	9659024	.	+	.	Parent=Os01t0276033-00
Chr01	irgsp1_rep	exon	9660898	9661024	.	+	.	Parent=Os01t0276033-00
Chr01	irgsp1_rep	mRNA	9659330	9659922	.	-	.	ID=Os01t0276066-00;Name=Os01t0276066-00;Locus_id=Os01g0276066;Note=Non-protein coding transcript.;Transcript_evidence=BT061579 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0276066-00
Chr01	irgsp1_rep	exon	9659330	9659922	.	-	.	Parent=Os01t0276066-00
Chr01	irgsp1_rep	mRNA	9665409	9670111	.	+	.	ID=Os01t0276100-01;Name=Os01t0276100-01;Locus_id=Os01g0276100;CGSNL Gene Symbol=IDHA;CGSNL Gene Name=ISOCITRATE DEHYDROGENASE SUBUNIT A;Oryzabase Gene Symbol Synonym(s)=OsIDHa;Oryzabase Gene Name Synonym(s)=NAD-dependent isocitrate dehydrogenase a;Note=Similar to 3-isopropylmalate dehydrogenase%2C chloroplast precursor (EC 1.1.1.85) (Beta-IPM dehydrogenase) (IMDH) (3-IPM-DH).;Transcript_evidence=AK059596 (DDBJ%2C Best hit);ORF_evidence=NP_001149947.1 (RefSeq);GO=Biological Process: tricarboxylic acid cycle (GO:0006099),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: isocitrate dehydrogenase (NAD+) activity (GO:0004449),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: NAD binding (GO:0051287);InterPro=Isocitrate/isopropylmalate dehydrogenase (IPR001804),Isocitrate dehydrogenase NAD-dependent (IPR004434),Isocitrate/isopropylmalate dehydrogenase%2C conserved site (IPR019818),Isopropylmalate dehydrogenase-like domain (IPR024084);NIAS_FLcDNA=001-030-D11;Oryzabase=14086;Expression=AK059596;TENOR=Os01t0276100-01;KEGG=Os01t0276100-01 (EC:1.1.1.41%2C EC:1.1.1.85)
Chr01	irgsp1_rep	five_prime_UTR	9665409	9665516	.	+	.	Parent=Os01t0276100-01
Chr01	irgsp1_rep	five_prime_UTR	9665820	9665851	.	+	.	Parent=Os01t0276100-01
Chr01	irgsp1_rep	CDS	9665852	9666007	.	+	0	Parent=Os01t0276100-01
Chr01	irgsp1_rep	CDS	9668054	9668374	.	+	0	Parent=Os01t0276100-01
Chr01	irgsp1_rep	CDS	9668453	9668614	.	+	0	Parent=Os01t0276100-01
Chr01	irgsp1_rep	CDS	9668713	9668787	.	+	0	Parent=Os01t0276100-01
Chr01	irgsp1_rep	CDS	9668981	9669090	.	+	0	Parent=Os01t0276100-01
Chr01	irgsp1_rep	CDS	9669169	9669241	.	+	1	Parent=Os01t0276100-01
Chr01	irgsp1_rep	CDS	9669627	9669818	.	+	0	Parent=Os01t0276100-01
Chr01	irgsp1_rep	three_prime_UTR	9669819	9670111	.	+	.	Parent=Os01t0276100-01
Chr01	irgsp1_rep	mRNA	9671077	9676036	.	-	.	ID=Os01t0276200-00;Name=Os01t0276200-00;Locus_id=Os01g0276200;Oryzabase Gene Symbol Synonym(s)=OSVDAC7%2C osvdac7%2C OsVDAC7%2C VDAC7;Oryzabase Gene Name Synonym(s)=voltage-dependent anion channel 7%2C voltage-dependent anion-selective channel 7;Note=Similar to Mitochondrial import receptor subunit TOM40.;Transcript_evidence=BT040757 (DDBJ);ORF_evidence=B6TEP3 (UniProt);GO=Biological Process: anion transport (GO:0006820),Biological Process: regulation of anion transport (GO:0044070),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial outer membrane (GO:0005741),Molecular Function: voltage-gated anion channel activity (GO:0008308);InterPro=Porin%2C eukaryotic type (IPR001925);Oryzabase=20304;TENOR=Os01t0276200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	9675552	9676036	.	-	0	Parent=Os01t0276200-00
Chr01	irgsp1_rep	CDS	9675165	9675303	.	-	1	Parent=Os01t0276200-00
Chr01	irgsp1_rep	CDS	9674977	9675072	.	-	0	Parent=Os01t0276200-00
Chr01	irgsp1_rep	CDS	9674815	9674865	.	-	0	Parent=Os01t0276200-00
Chr01	irgsp1_rep	CDS	9673831	9673896	.	-	0	Parent=Os01t0276200-00
Chr01	irgsp1_rep	CDS	9672916	9673017	.	-	0	Parent=Os01t0276200-00
Chr01	irgsp1_rep	CDS	9672074	9672142	.	-	0	Parent=Os01t0276200-00
Chr01	irgsp1_rep	CDS	9671910	9671993	.	-	0	Parent=Os01t0276200-00
Chr01	irgsp1_rep	CDS	9671593	9671688	.	-	0	Parent=Os01t0276200-00
Chr01	irgsp1_rep	CDS	9671133	9671189	.	-	0	Parent=Os01t0276200-00
Chr01	irgsp1_rep	three_prime_UTR	9671077	9671132	.	-	.	Parent=Os01t0276200-00
Chr01	irgsp1_rep	mRNA	9679828	9680883	.	+	.	ID=Os01t0276300-01;Name=Os01t0276300-01;Locus_id=Os01g0276300;Oryzabase Gene Symbol Synonym(s)=OsEnS-4;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 4;Note=Similar to Group 3 late embryogenesis abundant protein (Fragment).;Transcript_evidence=AK108165 (DDBJ%2C Best hit);ORF_evidence=Q03967 (UniProt);NIAS_FLcDNA=002-139-H04;Oryzabase=18351;Expression=AK108165;TENOR=Os01t0276300-01;KEGG=Os01t0276300-01
Chr01	irgsp1_rep	five_prime_UTR	9679828	9679916	.	+	.	Parent=Os01t0276300-01
Chr01	irgsp1_rep	CDS	9679917	9680335	.	+	0	Parent=Os01t0276300-01
Chr01	irgsp1_rep	CDS	9680439	9680745	.	+	1	Parent=Os01t0276300-01
Chr01	irgsp1_rep	three_prime_UTR	9680746	9680883	.	+	.	Parent=Os01t0276300-01
Chr01	irgsp1_rep	mRNA	9682795	9684110	.	-	.	ID=Os01t0276400-01;Name=Os01t0276400-01;Locus_id=Os01g0276400;Note=Similar to presenilin.;Transcript_evidence=AK106403 (DDBJ%2C Best hit);ORF_evidence=NP_001149271.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A22A%2C presenilin (IPR001108),Peptidase A22%2C presenilin signal peptide (IPR006639);NIAS_FLcDNA=002-102-G09;TENOR=Os01t0276400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	9682860	9684110	.	-	0	Parent=Os01t0276400-01
Chr01	irgsp1_rep	three_prime_UTR	9682795	9682859	.	-	.	Parent=Os01t0276400-01
Chr01	irgsp1_rep	mRNA	9684848	9689506	.	-	.	ID=Os01t0276500-01;Name=Os01t0276500-01;Locus_id=Os01g0276500;Note=Similar to Histidine biosynthesis bifunctional protein hisIE%2C chloroplast precursor [Includes: Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (PRA-CH)%3B Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (PRA-PH)].;Transcript_evidence=AK061002 (DDBJ%2C Best hit);ORF_evidence=NP_001150567.1 (RefSeq);GO=Biological Process: histidine biosynthetic process (GO:0000105),Molecular Function: phosphoribosyl-AMP cyclohydrolase activity (GO:0004635),Molecular Function: phosphoribosyl-ATP diphosphatase activity (GO:0004636);InterPro=Phosphoribosyl-AMP cyclohydrolase (IPR002496),Phosphoribosyl-ATP pyrophosphohydrolase (IPR008179),Phosphoribosyl-ATP pyrophosphohydrolase-like (IPR021130);NIAS_FLcDNA=006-203-G09;TENOR=Os01t0276500-01
Chr01	irgsp1_rep	five_prime_UTR	9689456	9689506	.	-	.	Parent=Os01t0276500-01
Chr01	irgsp1_rep	CDS	9689231	9689455	.	-	0	Parent=Os01t0276500-01
Chr01	irgsp1_rep	CDS	9687853	9688098	.	-	0	Parent=Os01t0276500-01
Chr01	irgsp1_rep	CDS	9687669	9687764	.	-	0	Parent=Os01t0276500-01
Chr01	irgsp1_rep	CDS	9687445	9687596	.	-	0	Parent=Os01t0276500-01
Chr01	irgsp1_rep	CDS	9685078	9685279	.	-	1	Parent=Os01t0276500-01
Chr01	irgsp1_rep	three_prime_UTR	9684848	9685077	.	-	.	Parent=Os01t0276500-01
Chr01	irgsp1_rep	mRNA	9684853	9689468	.	-	.	ID=Os01t0276500-02;Name=Os01t0276500-02;Locus_id=Os01g0276500;Note=Similar to Histidine biosynthesis bifunctional protein hisIE%2C chloroplast precursor [Includes: Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (PRA-CH)%3B Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (PRA-PH)].;Transcript_evidence=AK099335 (DDBJ%2C Best hit);ORF_evidence=NP_001150567.1 (RefSeq);GO=Biological Process: histidine biosynthetic process (GO:0000105),Molecular Function: phosphoribosyl-AMP cyclohydrolase activity (GO:0004635),Molecular Function: phosphoribosyl-ATP diphosphatase activity (GO:0004636);InterPro=Phosphoribosyl-AMP cyclohydrolase (IPR002496),Phosphoribosyl-ATP pyrophosphohydrolase (IPR008179),Phosphoribosyl-ATP pyrophosphohydrolase-like (IPR021130);NIAS_FLcDNA=J033024J06;TENOR=Os01t0276500-02
Chr01	irgsp1_rep	five_prime_UTR	9689456	9689468	.	-	.	Parent=Os01t0276500-02
Chr01	irgsp1_rep	CDS	9689231	9689455	.	-	0	Parent=Os01t0276500-02
Chr01	irgsp1_rep	CDS	9687853	9688098	.	-	0	Parent=Os01t0276500-02
Chr01	irgsp1_rep	CDS	9687669	9687764	.	-	0	Parent=Os01t0276500-02
Chr01	irgsp1_rep	CDS	9687445	9687596	.	-	0	Parent=Os01t0276500-02
Chr01	irgsp1_rep	CDS	9685078	9685279	.	-	1	Parent=Os01t0276500-02
Chr01	irgsp1_rep	three_prime_UTR	9684853	9685077	.	-	.	Parent=Os01t0276500-02
Chr01	irgsp1_rep	mRNA	9690348	9692094	.	+	.	ID=Os01t0276600-01;Name=Os01t0276600-01;Locus_id=Os01g0276600;Oryzabase Gene Symbol Synonym(s)=OsSTA11%2C OsRFP;Oryzabase Gene Name Synonym(s)=RING Finger Protein;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK071739 (DDBJ%2C Best hit);ORF_evidence=A2WNF3 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J023108I11;Oryzabase=19325;Expression=AK071739;TENOR=Os01t0276600-01;KEGG=Os01t0276600-01 (EC:6.3.2.19)
Chr01	irgsp1_rep	five_prime_UTR	9690348	9690389	.	+	.	Parent=Os01t0276600-01
Chr01	irgsp1_rep	five_prime_UTR	9690810	9690878	.	+	.	Parent=Os01t0276600-01
Chr01	irgsp1_rep	CDS	9690879	9691868	.	+	0	Parent=Os01t0276600-01
Chr01	irgsp1_rep	three_prime_UTR	9691869	9692094	.	+	.	Parent=Os01t0276600-01
Chr01	irgsp1_rep	mRNA	9691036	9691721	.	-	.	ID=Os01t0276650-00;Name=Os01t0276650-00;Locus_id=Os01g0276650;Note=Non-protein coding transcript.;Transcript_evidence=BT064098 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0276650-00
Chr01	irgsp1_rep	exon	9691416	9691721	.	-	.	Parent=Os01t0276650-00
Chr01	irgsp1_rep	exon	9691036	9691333	.	-	.	Parent=Os01t0276650-00
Chr01	irgsp1_rep	mRNA	9694494	9699817	.	-	.	ID=Os01t0276700-01;Name=Os01t0276700-01;Locus_id=Os01g0276700;Note=Similar to Pyruvate kinase%2C cytosolic isozyme (EC 2.7.1.40) (PK).;Transcript_evidence=AK103164 (DDBJ%2C Best hit);ORF_evidence=B8ACJ0 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyruvate kinase activity (GO:0004743),Molecular Function: potassium ion binding (GO:0030955);InterPro=Pyruvate kinase (IPR001697),Pyruvate kinase-like%2C insert domain (IPR011037),Pyruvate kinase%2C barrel (IPR015793),Pyruvate kinase%2C alpha/beta (IPR015794),Pyruvate kinase%2C C-terminal (IPR015795),Pyruvate kinase%2C beta-barrel insert domain (IPR015806),Pyruvate/Phosphoenolpyruvate kinase (IPR015813),Pyruvate kinase%2C active site (IPR018209);NIAS_FLcDNA=J033121D22;Expression=AK103164;TENOR=Os01t0276700-01;KEGG=Os01t0276700-01 (EC:2.7.1.40)
Chr01	irgsp1_rep	five_prime_UTR	9699605	9699817	.	-	.	Parent=Os01t0276700-01
Chr01	irgsp1_rep	CDS	9699350	9699604	.	-	0	Parent=Os01t0276700-01
Chr01	irgsp1_rep	CDS	9695615	9696076	.	-	0	Parent=Os01t0276700-01
Chr01	irgsp1_rep	CDS	9694726	9695541	.	-	0	Parent=Os01t0276700-01
Chr01	irgsp1_rep	three_prime_UTR	9694494	9694725	.	-	.	Parent=Os01t0276700-01
Chr01	irgsp1_rep	mRNA	9694027	9699718	.	-	.	ID=Os01t0276700-02;Name=Os01t0276700-02;Locus_id=Os01g0276700;Note=Similar to Pyruvate kinase%2C cytosolic isozyme (EC 2.7.1.40) (PK).;Transcript_evidence=AK103465 (DDBJ%2C Best hit);ORF_evidence=B8ACJ0 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyruvate kinase activity (GO:0004743),Molecular Function: potassium ion binding (GO:0030955);InterPro=Pyruvate kinase (IPR001697),Pyruvate kinase-like%2C insert domain (IPR011037),Pyruvate kinase%2C barrel (IPR015793),Pyruvate kinase%2C alpha/beta (IPR015794),Pyruvate kinase%2C C-terminal (IPR015795),Pyruvate kinase%2C beta-barrel insert domain (IPR015806),Pyruvate/Phosphoenolpyruvate kinase (IPR015813),Pyruvate kinase%2C active site (IPR018209);NIAS_FLcDNA=J033129N11;Expression=AK103465;TENOR=Os01t0276700-02;KEGG=Os01t0276700-02 (EC:2.7.1.40)
Chr01	irgsp1_rep	five_prime_UTR	9699605	9699718	.	-	.	Parent=Os01t0276700-02
Chr01	irgsp1_rep	CDS	9699350	9699604	.	-	0	Parent=Os01t0276700-02
Chr01	irgsp1_rep	CDS	9695615	9696076	.	-	0	Parent=Os01t0276700-02
Chr01	irgsp1_rep	CDS	9694726	9695541	.	-	0	Parent=Os01t0276700-02
Chr01	irgsp1_rep	three_prime_UTR	9694027	9694725	.	-	.	Parent=Os01t0276700-02
Chr01	irgsp1_rep	mRNA	9694428	9695805	.	-	.	ID=Os01t0276700-03;Name=Os01t0276700-03;Locus_id=Os01g0276700;Note=Similar to Pyruvate kinase.;Transcript_evidence=AK059579 (DDBJ%2C Best hit);ORF_evidence=B8ACJ0 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyruvate kinase activity (GO:0004743),Molecular Function: potassium ion binding (GO:0030955);InterPro=Pyruvate kinase (IPR001697),Pyruvate kinase%2C barrel (IPR015793),Pyruvate kinase%2C alpha/beta (IPR015794),Pyruvate kinase%2C C-terminal (IPR015795),Pyruvate/Phosphoenolpyruvate kinase (IPR015813),Pyruvate kinase%2C active site (IPR018209);NIAS_FLcDNA=001-030-B01;Expression=AK059579;TENOR=Os01t0276700-03;KEGG=Os01t0276700-03 (EC:2.7.1.40)
Chr01	irgsp1_rep	five_prime_UTR	9695804	9695805	.	-	.	Parent=Os01t0276700-03
Chr01	irgsp1_rep	CDS	9695615	9695803	.	-	0	Parent=Os01t0276700-03
Chr01	irgsp1_rep	CDS	9694726	9695541	.	-	0	Parent=Os01t0276700-03
Chr01	irgsp1_rep	three_prime_UTR	9694428	9694725	.	-	.	Parent=Os01t0276700-03
Chr01	irgsp1_rep	mRNA	9694472	9695737	.	-	.	ID=Os01t0276700-04;Name=Os01t0276700-04;Locus_id=Os01g0276700;Note=Similar to Pyruvate kinase.;Transcript_evidence=AK100799 (DDBJ%2C Best hit);ORF_evidence=B8ACJ0 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyruvate kinase activity (GO:0004743),Molecular Function: potassium ion binding (GO:0030955);InterPro=Pyruvate kinase (IPR001697),Pyruvate kinase%2C barrel (IPR015793),Pyruvate kinase%2C alpha/beta (IPR015794),Pyruvate kinase%2C C-terminal (IPR015795),Pyruvate/Phosphoenolpyruvate kinase (IPR015813),Pyruvate kinase%2C active site (IPR018209);NIAS_FLcDNA=J023121F22;Expression=AK100799;TENOR=Os01t0276700-04;KEGG=Os01t0276700-04 (EC:2.7.1.40)
Chr01	irgsp1_rep	CDS	9695615	9695737	.	-	0	Parent=Os01t0276700-04
Chr01	irgsp1_rep	CDS	9694726	9695541	.	-	0	Parent=Os01t0276700-04
Chr01	irgsp1_rep	three_prime_UTR	9694472	9694725	.	-	.	Parent=Os01t0276700-04
Chr01	irgsp1_rep	mRNA	9702793	9709686	.	-	.	ID=Os01t0276800-01;Name=Os01t0276800-01;Locus_id=Os01g0276800;RAP-DB Gene Symbol Synonym(s)=Gas2%2C OsGAS2;RAP-DB Gene Name Synonym(s)=glucosidase II &beta%3B subunit%2C glucosidase II b subunit;CGSNL Gene Symbol=GAS2;Oryzabase Gene Symbol Synonym(s)=OsGAS2;Oryzabase Gene Name Synonym(s)=glucosidase II beta subunit%2C glucosidase II b subunit;Note=Glucosidase II &beta%3B subunit%2C Potential switch between programmed cell death and autophagy;Transcript_evidence=AK102926;ORF_evidence=Q5NBP9;GO=Molecular Function: protein binding (GO:0005515);InterPro=Mannose-6-phosphate receptor binding domain superfamily (IPR009011),Glucosidase II beta subunit%2C N-terminal (IPR028146),Glucosidase 2 subunit beta-like (IPR036607),Low-density lipoprotein (LDL) receptor class A repeat (IPR002172);NIAS_FLcDNA=J033114E08;Manual Curation=April 26%2C 2018;Literature_PMID=27538481;Oryzabase=22579;Expression=AK102926;TENOR=Os01t0276800-01;KEGG=Os01t0276800-01;Subcellular location=endoplasmic reticulum (GO:0005783)
Chr01	irgsp1_rep	five_prime_UTR	9709552	9709686	.	-	.	Parent=Os01t0276800-01
Chr01	irgsp1_rep	CDS	9709452	9709551	.	-	0	Parent=Os01t0276800-01
Chr01	irgsp1_rep	CDS	9709217	9709330	.	-	2	Parent=Os01t0276800-01
Chr01	irgsp1_rep	CDS	9708946	9709041	.	-	2	Parent=Os01t0276800-01
Chr01	irgsp1_rep	CDS	9708525	9708764	.	-	2	Parent=Os01t0276800-01
Chr01	irgsp1_rep	CDS	9708216	9708394	.	-	2	Parent=Os01t0276800-01
Chr01	irgsp1_rep	CDS	9707451	9707525	.	-	0	Parent=Os01t0276800-01
Chr01	irgsp1_rep	CDS	9707029	9707124	.	-	0	Parent=Os01t0276800-01
Chr01	irgsp1_rep	CDS	9705297	9705648	.	-	0	Parent=Os01t0276800-01
Chr01	irgsp1_rep	CDS	9705099	9705203	.	-	2	Parent=Os01t0276800-01
Chr01	irgsp1_rep	CDS	9704919	9705020	.	-	2	Parent=Os01t0276800-01
Chr01	irgsp1_rep	CDS	9704248	9704305	.	-	2	Parent=Os01t0276800-01
Chr01	irgsp1_rep	CDS	9704051	9704119	.	-	1	Parent=Os01t0276800-01
Chr01	irgsp1_rep	CDS	9703602	9703689	.	-	1	Parent=Os01t0276800-01
Chr01	irgsp1_rep	CDS	9703434	9703495	.	-	0	Parent=Os01t0276800-01
Chr01	irgsp1_rep	CDS	9703296	9703347	.	-	1	Parent=Os01t0276800-01
Chr01	irgsp1_rep	CDS	9703152	9703208	.	-	0	Parent=Os01t0276800-01
Chr01	irgsp1_rep	three_prime_UTR	9702793	9703151	.	-	.	Parent=Os01t0276800-01
Chr01	irgsp1_rep	mRNA	9708349	9709615	.	-	.	ID=Os01t0276800-02;Name=Os01t0276800-02;Locus_id=Os01g0276800;CGSNL Gene Symbol=GAS2;Oryzabase Gene Symbol Synonym(s)=OsGAS2;Oryzabase Gene Name Synonym(s)=glucosidase II beta subunit%2C glucosidase II b subunit;Note=Similar to predicted protein.;Transcript_evidence=AK062536 (DDBJ%2C Best hit);ORF_evidence=NP_568840.3 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Low-density lipoprotein (LDL) receptor class A repeat (IPR002172);NIAS_FLcDNA=001-104-F04;Oryzabase=22579;TENOR=Os01t0276800-02
Chr01	irgsp1_rep	five_prime_UTR	9709552	9709615	.	-	.	Parent=Os01t0276800-02
Chr01	irgsp1_rep	CDS	9709452	9709551	.	-	0	Parent=Os01t0276800-02
Chr01	irgsp1_rep	CDS	9709217	9709330	.	-	2	Parent=Os01t0276800-02
Chr01	irgsp1_rep	CDS	9708946	9709041	.	-	2	Parent=Os01t0276800-02
Chr01	irgsp1_rep	CDS	9708525	9708764	.	-	2	Parent=Os01t0276800-02
Chr01	irgsp1_rep	CDS	9708349	9708394	.	-	2	Parent=Os01t0276800-02
Chr01	irgsp1_rep	mRNA	9704245	9708630	.	-	.	ID=Os01t0276800-03;Name=Os01t0276800-03;Locus_id=Os01g0276800;CGSNL Gene Symbol=GAS2;Oryzabase Gene Symbol Synonym(s)=OsGAS2;Oryzabase Gene Name Synonym(s)=glucosidase II beta subunit%2C glucosidase II b subunit;Note=Hypothetical conserved gene.;Transcript_evidence=AK108476 (DDBJ%2C Best hit);ORF_evidence=B9EV73 (UniProt);NIAS_FLcDNA=002-143-E11;Oryzabase=22579;TENOR=Os01t0276800-03
Chr01	irgsp1_rep	CDS	9708525	9708630	.	-	0	Parent=Os01t0276800-03
Chr01	irgsp1_rep	CDS	9708216	9708394	.	-	2	Parent=Os01t0276800-03
Chr01	irgsp1_rep	CDS	9707451	9707525	.	-	0	Parent=Os01t0276800-03
Chr01	irgsp1_rep	CDS	9707029	9707124	.	-	0	Parent=Os01t0276800-03
Chr01	irgsp1_rep	CDS	9705297	9705648	.	-	0	Parent=Os01t0276800-03
Chr01	irgsp1_rep	CDS	9705099	9705203	.	-	2	Parent=Os01t0276800-03
Chr01	irgsp1_rep	CDS	9704919	9705020	.	-	2	Parent=Os01t0276800-03
Chr01	irgsp1_rep	CDS	9704245	9704305	.	-	2	Parent=Os01t0276800-03
Chr01	irgsp1_rep	mRNA	9702793	9705153	.	-	.	ID=Os01t0276800-04;Name=Os01t0276800-04;Locus_id=Os01g0276800;CGSNL Gene Symbol=GAS2;Oryzabase Gene Symbol Synonym(s)=OsGAS2;Oryzabase Gene Name Synonym(s)=glucosidase II beta subunit%2C glucosidase II b subunit;Note=Similar to predicted protein.;Transcript_evidence=AK072491 (DDBJ%2C Best hit);ORF_evidence=XP_002866138.1 (RefSeq);InterPro=Mannose-6-phosphate receptor%2C binding (IPR009011),Glucosidase II beta subunit-like (IPR012913);NIAS_FLcDNA=J023131J23;Oryzabase=22579;Expression=AK072491;TENOR=Os01t0276800-04;KEGG=Os01t0276800-04
Chr01	irgsp1_rep	CDS	9705099	9705153	.	-	0	Parent=Os01t0276800-04
Chr01	irgsp1_rep	CDS	9704919	9705020	.	-	2	Parent=Os01t0276800-04
Chr01	irgsp1_rep	CDS	9704248	9704305	.	-	2	Parent=Os01t0276800-04
Chr01	irgsp1_rep	CDS	9704051	9704119	.	-	1	Parent=Os01t0276800-04
Chr01	irgsp1_rep	CDS	9703602	9703689	.	-	1	Parent=Os01t0276800-04
Chr01	irgsp1_rep	CDS	9703434	9703495	.	-	0	Parent=Os01t0276800-04
Chr01	irgsp1_rep	CDS	9703296	9703347	.	-	1	Parent=Os01t0276800-04
Chr01	irgsp1_rep	CDS	9703152	9703208	.	-	0	Parent=Os01t0276800-04
Chr01	irgsp1_rep	three_prime_UTR	9702793	9703151	.	-	.	Parent=Os01t0276800-04
Chr01	irgsp1_rep	mRNA	9702737	9705021	.	-	.	ID=Os01t0276800-05;Name=Os01t0276800-05;Locus_id=Os01g0276800;CGSNL Gene Symbol=GAS2;Oryzabase Gene Symbol Synonym(s)=OsGAS2;Oryzabase Gene Name Synonym(s)=glucosidase II beta subunit%2C glucosidase II b subunit;Note=Similar to predicted protein.;Transcript_evidence=AK104914 (DDBJ%2C Best hit);ORF_evidence=XP_002866138.1 (RefSeq);InterPro=Mannose-6-phosphate receptor%2C binding (IPR009011),Glucosidase II beta subunit-like (IPR012913);NIAS_FLcDNA=001-047-C10;Oryzabase=22579;Expression=AK104914;TENOR=Os01t0276800-05;KEGG=Os01t0276800-05
Chr01	irgsp1_rep	CDS	9704919	9705021	.	-	0	Parent=Os01t0276800-05
Chr01	irgsp1_rep	CDS	9704248	9704305	.	-	2	Parent=Os01t0276800-05
Chr01	irgsp1_rep	CDS	9704051	9704119	.	-	1	Parent=Os01t0276800-05
Chr01	irgsp1_rep	CDS	9703602	9703689	.	-	1	Parent=Os01t0276800-05
Chr01	irgsp1_rep	CDS	9703434	9703495	.	-	0	Parent=Os01t0276800-05
Chr01	irgsp1_rep	CDS	9703296	9703347	.	-	1	Parent=Os01t0276800-05
Chr01	irgsp1_rep	CDS	9703152	9703208	.	-	0	Parent=Os01t0276800-05
Chr01	irgsp1_rep	three_prime_UTR	9702737	9703151	.	-	.	Parent=Os01t0276800-05
Chr01	irgsp1_rep	mRNA	9711631	9712419	.	-	.	ID=Os01t0276900-01;Name=Os01t0276900-01;Locus_id=Os01g0276900;Note=Conserved hypothetical protein.;Transcript_evidence=AK105130 (DDBJ%2C Best hit);ORF_evidence=A2WNF6 (UniProt);NIAS_FLcDNA=001-101-F05;Expression=AK105130;TENOR=Os01t0276900-01;KEGG=Os01t0276900-01
Chr01	irgsp1_rep	five_prime_UTR	9712316	9712419	.	-	.	Parent=Os01t0276900-01
Chr01	irgsp1_rep	CDS	9712228	9712315	.	-	0	Parent=Os01t0276900-01
Chr01	irgsp1_rep	CDS	9711854	9712134	.	-	2	Parent=Os01t0276900-01
Chr01	irgsp1_rep	three_prime_UTR	9711631	9711853	.	-	.	Parent=Os01t0276900-01
Chr01	irgsp1_rep	mRNA	9727698	9728244	.	+	.	ID=Os01t0277100-01;Name=Os01t0277100-01;Locus_id=Os01g0277100;Note=Hypothetical protein.;Transcript_evidence=AK062999 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-109-H01;Expression=AK062999;TENOR=Os01t0277100-01;KEGG=Os01t0277100-01
Chr01	irgsp1_rep	five_prime_UTR	9727698	9727734	.	+	.	Parent=Os01t0277100-01
Chr01	irgsp1_rep	CDS	9727735	9728097	.	+	0	Parent=Os01t0277100-01
Chr01	irgsp1_rep	three_prime_UTR	9728098	9728244	.	+	.	Parent=Os01t0277100-01
Chr01	irgsp1_rep	mRNA	9733832	9738224	.	+	.	ID=Os01t0277500-01;Name=Os01t0277500-01;Locus_id=Os01g0277500;RAP-DB Gene Symbol Synonym(s)=OsDof4;RAP-DB Gene Name Synonym(s)=Dof transcription factor 4;Oryzabase Gene Symbol Synonym(s)=OsDof4%2C Dof4%2C OsDof-4%2C Dof-4;Oryzabase Gene Name Synonym(s)=Dof zinc factor 4%2C Dof transcription factor 4;Note=Dof (DNA binding with one finger) transcription factor%2C C2-C2 zinc finger transcription factor%2C Regulation of flowering time;Transcript_evidence=AK066984;ORF_evidence=Q5NBP4;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Zinc finger%2C Dof-type (IPR003851);NIAS_FLcDNA=J013091E10;Manual Curation=October 24%2C 2017;Literature_PMID=29052517;Oryzabase=20262;TENOR=Os01t0277500-01;Subcellular location=nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	9733832	9734033	.	+	.	Parent=Os01t0277500-01
Chr01	irgsp1_rep	CDS	9734034	9734138	.	+	0	Parent=Os01t0277500-01
Chr01	irgsp1_rep	CDS	9736278	9737645	.	+	0	Parent=Os01t0277500-01
Chr01	irgsp1_rep	three_prime_UTR	9737646	9738224	.	+	.	Parent=Os01t0277500-01
Chr01	irgsp1_rep	mRNA	9738449	9744876	.	-	.	ID=Os01t0277600-00;Name=Os01t0277600-00;Locus_id=Os01g0277600;CGSNL Gene Symbol=ALA2;CGSNL Gene Name=AMINOPHOSPHOLIPID ATPASE 2;Oryzabase Gene Symbol Synonym(s)=osALA2;Oryzabase Gene Name Synonym(s)=aminophospholipid P-Type ATPase 2;Note=Similar to aminophospholipid ATPase.;Transcript_evidence=tplb0014e24 (Wheat FLcDNA);ORF_evidence=XP_002315406.1 (RefSeq);GO=Biological Process: ATP biosynthetic process (GO:0006754),Biological Process: cation transport (GO:0006812),Biological Process: phospholipid transport (GO:0015914),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: phospholipid-translocating ATPase activity (GO:0004012),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C catalyzing transmembrane movement of substances (GO:0016820),Molecular Function: metal ion binding (GO:0046872);InterPro=ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),ATPase%2C P-type cation exchange%2C alpha subunit (IPR006069),ATPase%2C P-type%2C phospholipid-translocating%2C flippase (IPR006539),ATPase%2C P-type%2C ATPase-associated domain (IPR008250),ATPase%2C P-type phosphorylation site (IPR018303),HAD-like domain (IPR023214),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C  P-type%2C cytoplasmic transduction domain A (IPR023300),ATPase%2C cation-transporting%2C domain N (IPR023306);Oryzabase=13245;TENOR=Os01t0277600-00;KEGG=Os01t0277600-00 (EC:3.6.3.1)
Chr01	irgsp1_rep	five_prime_UTR	9744729	9744876	.	-	.	Parent=Os01t0277600-00
Chr01	irgsp1_rep	CDS	9743237	9744728	.	-	0	Parent=Os01t0277600-00
Chr01	irgsp1_rep	CDS	9742850	9743156	.	-	2	Parent=Os01t0277600-00
Chr01	irgsp1_rep	CDS	9740951	9741659	.	-	1	Parent=Os01t0277600-00
Chr01	irgsp1_rep	CDS	9740732	9740855	.	-	0	Parent=Os01t0277600-00
Chr01	irgsp1_rep	CDS	9740413	9740632	.	-	2	Parent=Os01t0277600-00
Chr01	irgsp1_rep	CDS	9739727	9740185	.	-	1	Parent=Os01t0277600-00
Chr01	irgsp1_rep	CDS	9738622	9738838	.	-	1	Parent=Os01t0277600-00
Chr01	irgsp1_rep	three_prime_UTR	9738449	9738621	.	-	.	Parent=Os01t0277600-00
Chr01	irgsp1_rep	mRNA	9750124	9753739	.	+	.	ID=Os01t0277700-01;Name=Os01t0277700-01;Locus_id=Os01g0277700;Note=Similar to Glycosyl hydrolases family 17 protein.;Transcript_evidence=AK061133 (DDBJ%2C Best hit),AK099198 (DDBJ%2C Best hit);ORF_evidence=Q0KIW0 (UniProt);NIAS_FLcDNA=006-208-A12,J023115B14;TENOR=Os01t0277700-01
Chr01	irgsp1_rep	five_prime_UTR	9750124	9750189	.	+	.	Parent=Os01t0277700-01
Chr01	irgsp1_rep	CDS	9750190	9750382	.	+	0	Parent=Os01t0277700-01
Chr01	irgsp1_rep	CDS	9751807	9752134	.	+	2	Parent=Os01t0277700-01
Chr01	irgsp1_rep	CDS	9753195	9753399	.	+	1	Parent=Os01t0277700-01
Chr01	irgsp1_rep	three_prime_UTR	9753400	9753739	.	+	.	Parent=Os01t0277700-01
Chr01	irgsp1_rep	mRNA	9770018	9771047	.	-	.	ID=Os01t0278000-00;Name=Os01t0278000-00;Locus_id=Os01g0278000;Oryzabase Gene Symbol Synonym(s)=OsVQ1;Oryzabase Gene Name Synonym(s)=VQ motif-containing protein 1;Note=VQ domain containing protein.;Transcript_evidence=CT835506 (DDBJ%2C Best hit);ORF_evidence=A2WNG2 (UniProt);InterPro=VQ (IPR008889);Oryzabase=13617;TENOR=Os01t0278000-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	9771000	9771047	.	-	.	Parent=Os01t0278000-00
Chr01	irgsp1_rep	CDS	9770388	9770999	.	-	0	Parent=Os01t0278000-00
Chr01	irgsp1_rep	CDS	9770292	9770372	.	-	0	Parent=Os01t0278000-00
Chr01	irgsp1_rep	three_prime_UTR	9770018	9770291	.	-	.	Parent=Os01t0278000-00
Chr01	irgsp1_rep	mRNA	9787093	9787848	.	+	.	ID=Os01t0278050-00;Name=Os01t0278050-00;Locus_id=Os01g0278050;Note=Hypothetical conserved gene.;Transcript_evidence=CT835007 (DDBJ%2C Best hit);ORF_evidence=Q9LJ32 (UniProt);TENOR=Os01t0278050-00;KEGG=Os01t0278050-00
Chr01	irgsp1_rep	five_prime_UTR	9787093	9787094	.	+	.	Parent=Os01t0278050-00
Chr01	irgsp1_rep	CDS	9787095	9787342	.	+	0	Parent=Os01t0278050-00
Chr01	irgsp1_rep	CDS	9787450	9787690	.	+	1	Parent=Os01t0278050-00
Chr01	irgsp1_rep	three_prime_UTR	9787691	9787848	.	+	.	Parent=Os01t0278050-00
Chr01	irgsp1_rep	mRNA	9788633	9789771	.	-	.	ID=Os01t0278100-01;Name=Os01t0278100-01;Locus_id=Os01g0278100;Note=Conserved hypothetical protein.;Transcript_evidence=AK105195 (DDBJ%2C Best hit);ORF_evidence=Q53MK6 (UniProt);NIAS_FLcDNA=001-107-E08;TENOR=Os01t0278100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	9789086	9789771	.	-	.	Parent=Os01t0278100-01
Chr01	irgsp1_rep	CDS	9788888	9789085	.	-	0	Parent=Os01t0278100-01
Chr01	irgsp1_rep	three_prime_UTR	9788633	9788887	.	-	.	Parent=Os01t0278100-01
Chr01	irgsp1_rep	mRNA	9793959	9796133	.	-	.	ID=Os01t0278200-01;Name=Os01t0278200-01;Locus_id=Os01g0278200;Note=Similar to Ran-binding protein 17.;Transcript_evidence=AK071473 (DDBJ%2C Best hit);ORF_evidence=Q10GR1 (UniProt);NIAS_FLcDNA=J023098B17;Expression=AK071473;TENOR=Os01t0278200-01;KEGG=Os01t0278200-01
Chr01	irgsp1_rep	five_prime_UTR	9795046	9796133	.	-	.	Parent=Os01t0278200-01
Chr01	irgsp1_rep	CDS	9794878	9795045	.	-	0	Parent=Os01t0278200-01
Chr01	irgsp1_rep	three_prime_UTR	9794847	9794877	.	-	.	Parent=Os01t0278200-01
Chr01	irgsp1_rep	three_prime_UTR	9794312	9794418	.	-	.	Parent=Os01t0278200-01
Chr01	irgsp1_rep	three_prime_UTR	9793959	9794232	.	-	.	Parent=Os01t0278200-01
Chr01	irgsp1_rep	mRNA	9809349	9809555	.	-	.	ID=Os01t0278466-00;Name=Os01t0278466-00;Locus_id=Os01g0278466;Note=Non-protein coding transcript.;Transcript_evidence=CT835260 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os01t0278466-00
Chr01	irgsp1_rep	exon	9809349	9809555	.	-	.	Parent=Os01t0278466-00
Chr01	irgsp1_rep	mRNA	9816821	9822750	.	+	.	ID=Os01t0278600-01;Name=Os01t0278600-01;Locus_id=Os01g0278600;Oryzabase Gene Symbol Synonym(s)=OsDegp1%2C DEGP1%2C OsDeg-like 1;Oryzabase Gene Name Synonym(s)=Deg protease 1%2C DEG PROTEASE 1;Note=PDZ/DHR/GLGF domain containing protein.;Transcript_evidence=AK073208 (DDBJ%2C Best hit);ORF_evidence=B8ACJ5 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein binding (GO:0005515);InterPro=PDZ/DHR/GLGF (IPR001478),Peptidase cysteine/serine%2C trypsin-like (IPR009003);NIAS_FLcDNA=J033005J17;Oryzabase=20077;Expression=AK073208;TENOR=Os01t0278600-01;KEGG=Os01t0278600-01
Chr01	irgsp1_rep	five_prime_UTR	9816821	9816941	.	+	.	Parent=Os01t0278600-01
Chr01	irgsp1_rep	CDS	9816942	9817242	.	+	0	Parent=Os01t0278600-01
Chr01	irgsp1_rep	CDS	9817796	9817936	.	+	2	Parent=Os01t0278600-01
Chr01	irgsp1_rep	CDS	9818012	9818130	.	+	2	Parent=Os01t0278600-01
Chr01	irgsp1_rep	CDS	9818946	9819215	.	+	0	Parent=Os01t0278600-01
Chr01	irgsp1_rep	CDS	9820603	9820733	.	+	0	Parent=Os01t0278600-01
Chr01	irgsp1_rep	CDS	9820906	9821026	.	+	1	Parent=Os01t0278600-01
Chr01	irgsp1_rep	CDS	9821489	9821581	.	+	0	Parent=Os01t0278600-01
Chr01	irgsp1_rep	CDS	9821699	9821794	.	+	0	Parent=Os01t0278600-01
Chr01	irgsp1_rep	CDS	9821901	9821983	.	+	0	Parent=Os01t0278600-01
Chr01	irgsp1_rep	CDS	9822087	9822144	.	+	1	Parent=Os01t0278600-01
Chr01	irgsp1_rep	three_prime_UTR	9822145	9822155	.	+	.	Parent=Os01t0278600-01
Chr01	irgsp1_rep	three_prime_UTR	9822461	9822750	.	+	.	Parent=Os01t0278600-01
Chr01	irgsp1_rep	mRNA	9816828	9822736	.	+	.	ID=Os01t0278600-02;Name=Os01t0278600-02;Locus_id=Os01g0278600;Oryzabase Gene Symbol Synonym(s)=OsDegp1%2C DEGP1%2C OsDeg-like 1;Oryzabase Gene Name Synonym(s)=Deg protease 1%2C DEG PROTEASE 1;Note=PDZ/DHR/GLGF domain containing protein.;Transcript_evidence=AK070514 (DDBJ%2C Best hit);ORF_evidence=B8ACJ5 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein binding (GO:0005515);InterPro=PDZ/DHR/GLGF (IPR001478),Peptidase cysteine/serine%2C trypsin-like (IPR009003);NIAS_FLcDNA=J023056J07;Oryzabase=20077;Expression=AK070514;TENOR=Os01t0278600-02;KEGG=Os01t0278600-02
Chr01	irgsp1_rep	five_prime_UTR	9816828	9816941	.	+	.	Parent=Os01t0278600-02
Chr01	irgsp1_rep	CDS	9816942	9817242	.	+	0	Parent=Os01t0278600-02
Chr01	irgsp1_rep	CDS	9817796	9817936	.	+	2	Parent=Os01t0278600-02
Chr01	irgsp1_rep	CDS	9818012	9818130	.	+	2	Parent=Os01t0278600-02
Chr01	irgsp1_rep	CDS	9818946	9819215	.	+	0	Parent=Os01t0278600-02
Chr01	irgsp1_rep	CDS	9820603	9820733	.	+	0	Parent=Os01t0278600-02
Chr01	irgsp1_rep	CDS	9820906	9821026	.	+	1	Parent=Os01t0278600-02
Chr01	irgsp1_rep	CDS	9821489	9821581	.	+	0	Parent=Os01t0278600-02
Chr01	irgsp1_rep	CDS	9821699	9821794	.	+	0	Parent=Os01t0278600-02
Chr01	irgsp1_rep	CDS	9821901	9821983	.	+	0	Parent=Os01t0278600-02
Chr01	irgsp1_rep	CDS	9822087	9822144	.	+	1	Parent=Os01t0278600-02
Chr01	irgsp1_rep	three_prime_UTR	9822145	9822736	.	+	.	Parent=Os01t0278600-02
Chr01	irgsp1_rep	mRNA	9859354	9860677	.	+	.	ID=Os01t0278900-01;Name=Os01t0278900-01;Locus_id=Os01g0278900;Oryzabase Gene Symbol Synonym(s)=RPL5;Oryzabase Gene Name Synonym(s)=ribosomal protein L5%2C 50 S ribosomal gene RPL5;Note=Similar to 50S ribosomal protein L40.;Transcript_evidence=AK120429 (DDBJ%2C Best hit);ORF_evidence=NP_001147184.1 (RefSeq);NIAS_FLcDNA=J013095M10;Oryzabase=21869;Expression=AK120429;TENOR=Os01t0278900-01;KEGG=Os01t0278900-01
Chr01	irgsp1_rep	five_prime_UTR	9859354	9859398	.	+	.	Parent=Os01t0278900-01
Chr01	irgsp1_rep	CDS	9859399	9859507	.	+	0	Parent=Os01t0278900-01
Chr01	irgsp1_rep	CDS	9860208	9860530	.	+	2	Parent=Os01t0278900-01
Chr01	irgsp1_rep	three_prime_UTR	9860531	9860677	.	+	.	Parent=Os01t0278900-01
Chr01	irgsp1_rep	mRNA	9863216	9866617	.	+	.	ID=Os01t0278950-00;Name=Os01t0278950-00;Locus_id=Os01g0278950;Note=Similar to predicted protein.;Transcript_evidence=EU957086 (DDBJ);ORF_evidence=Q9LJ20 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);TENOR=Os01t0278950-00;KEGG=Os01t0278950-00
Chr01	irgsp1_rep	five_prime_UTR	9863216	9863218	.	+	.	Parent=Os01t0278950-00
Chr01	irgsp1_rep	CDS	9863219	9863305	.	+	0	Parent=Os01t0278950-00
Chr01	irgsp1_rep	CDS	9863451	9863670	.	+	0	Parent=Os01t0278950-00
Chr01	irgsp1_rep	CDS	9863788	9863940	.	+	2	Parent=Os01t0278950-00
Chr01	irgsp1_rep	CDS	9864040	9864698	.	+	2	Parent=Os01t0278950-00
Chr01	irgsp1_rep	CDS	9864773	9864876	.	+	0	Parent=Os01t0278950-00
Chr01	irgsp1_rep	CDS	9864974	9865216	.	+	1	Parent=Os01t0278950-00
Chr01	irgsp1_rep	CDS	9865286	9865400	.	+	1	Parent=Os01t0278950-00
Chr01	irgsp1_rep	CDS	9865720	9865933	.	+	0	Parent=Os01t0278950-00
Chr01	irgsp1_rep	CDS	9866019	9866611	.	+	2	Parent=Os01t0278950-00
Chr01	irgsp1_rep	three_prime_UTR	9866612	9866617	.	+	.	Parent=Os01t0278950-00
Chr01	irgsp1_rep	mRNA	9863798	9866492	.	-	.	ID=Os01t0278975-00;Name=Os01t0278975-00;Locus_id=Os01g0278975;Note=Hypothetical protein.;Transcript_evidence=tplb0030b01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0278975-00
Chr01	irgsp1_rep	five_prime_UTR	9866023	9866492	.	-	.	Parent=Os01t0278975-00
Chr01	irgsp1_rep	five_prime_UTR	9865777	9865930	.	-	.	Parent=Os01t0278975-00
Chr01	irgsp1_rep	five_prime_UTR	9864955	9865379	.	-	.	Parent=Os01t0278975-00
Chr01	irgsp1_rep	CDS	9864905	9864954	.	-	0	Parent=Os01t0278975-00
Chr01	irgsp1_rep	CDS	9864021	9864723	.	-	1	Parent=Os01t0278975-00
Chr01	irgsp1_rep	three_prime_UTR	9863964	9864020	.	-	.	Parent=Os01t0278975-00
Chr01	irgsp1_rep	three_prime_UTR	9863798	9863881	.	-	.	Parent=Os01t0278975-00
Chr01	irgsp1_rep	mRNA	9866730	9870864	.	+	.	ID=Os01t0279000-01;Name=Os01t0279000-01;Locus_id=Os01g0279000;Oryzabase Gene Symbol Synonym(s)=OsSub1%2C SUB1;Oryzabase Gene Name Synonym(s)=Subtilisin 1%2C SUBTILISIN 1;Note=Zinc finger%2C DHHC-type domain containing protein.;Transcript_evidence=AK119444 (DDBJ%2C Best hit);ORF_evidence=NP_191252.1 (RefSeq);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C DHHC-type%2C palmitoyltransferase (IPR001594);NIAS_FLcDNA=001-133-C11;Oryzabase=20093;Expression=AK119444;TENOR=Os01t0279000-01;KEGG=Os01t0279000-01
Chr01	irgsp1_rep	five_prime_UTR	9866730	9868344	.	+	.	Parent=Os01t0279000-01
Chr01	irgsp1_rep	CDS	9868345	9868575	.	+	0	Parent=Os01t0279000-01
Chr01	irgsp1_rep	CDS	9868779	9869108	.	+	0	Parent=Os01t0279000-01
Chr01	irgsp1_rep	CDS	9869663	9869896	.	+	0	Parent=Os01t0279000-01
Chr01	irgsp1_rep	CDS	9870327	9870767	.	+	0	Parent=Os01t0279000-01
Chr01	irgsp1_rep	three_prime_UTR	9870768	9870864	.	+	.	Parent=Os01t0279000-01
Chr01	irgsp1_rep	mRNA	9874379	9876678	.	+	.	ID=Os01t0279100-01;Name=Os01t0279100-01;Locus_id=Os01g0279100;RAP-DB Gene Symbol Synonym(s)=OsCRD1%2C PNZIP%2C YGL8%2C YL-1;RAP-DB Gene Name Synonym(s)=PHARBITIS NIL LEUCINE ZIPPER%2C Rice Copper Response Defect 1%2C Yellow-Leaf 1%2C yellow-green leaf 8;CGSNL Gene Symbol=YL1;CGSNL Gene Name=YELLOW-LEAF 1;Oryzabase Gene Symbol Synonym(s)=MTC%2C YGL8%2C OsCRD1%2C CRD1%2C CRD%2C YL-1%2C PNZIP;Oryzabase Gene Name Synonym(s)=Mg-Proto IX monomethylester cyclase%2C yellow-green leaf 8%2C Copper Response Defect 1%2C Yellow-Leaf 1%2C PHARBITIS NIL LEUCINE ZIPPER;Note=Subunit of magnesium-protoporphyrin IX monomethyl ester cyclase (EC:1.14.13.81)%2C Core component of FLU-YGL8-LCAA-POR complex%2C Chlorophyll biosynthesis%2C Chloroplast development;Transcript_evidence=AK069333,AK058287,AK059435;ORF_evidence=Q9SDJ2;GO=Biological Process: photosynthesis (GO:0015979),Biological Process: chlorophyll biosynthetic process (GO:0015995),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: metal ion binding (GO:0046872),Molecular Function: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity (GO:0048529);InterPro=Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase (IPR008434),Ferritin-like superfamily (IPR009078),Ferritin-related (IPR012347),Rubrerythrin (IPR003251);NIAS_FLcDNA=J023014B03, 001-013-E02, 001-027-F10;Manual Curation=June 1%2C 2017;Literature_PMID=28558018,28129387,27514852;Oryzabase=8776;TENOR=Os01t0279100-01;Subcellular location=chloroplast (GO:0009507)
Chr01	irgsp1_rep	five_prime_UTR	9874379	9874422	.	+	.	Parent=Os01t0279100-01
Chr01	irgsp1_rep	CDS	9874423	9874893	.	+	0	Parent=Os01t0279100-01
Chr01	irgsp1_rep	CDS	9874993	9875057	.	+	0	Parent=Os01t0279100-01
Chr01	irgsp1_rep	CDS	9875250	9875577	.	+	1	Parent=Os01t0279100-01
Chr01	irgsp1_rep	CDS	9875680	9875778	.	+	0	Parent=Os01t0279100-01
Chr01	irgsp1_rep	CDS	9876001	9876264	.	+	0	Parent=Os01t0279100-01
Chr01	irgsp1_rep	three_prime_UTR	9876265	9876678	.	+	.	Parent=Os01t0279100-01
Chr01	irgsp1_rep	mRNA	9875693	9876532	.	+	.	ID=Os01t0279100-02;Name=Os01t0279100-02;Locus_id=Os01g0279100;CGSNL Gene Symbol=YL1;CGSNL Gene Name=YELLOW-LEAF 1;Oryzabase Gene Symbol Synonym(s)=MTC%2C YGL8%2C OsCRD1%2C CRD1%2C OsCRD%2C CRD%2C YL-1%2C PNZIP;Oryzabase Gene Name Synonym(s)=Mg-Proto IX monomethylester cyclase%2C yellow-green leaf 8%2C Copper Response Defect 1%2C Yellow-Leaf 1%2C PHARBITIS NIL LEUCINE ZIPPER;Note=Similar to Magnesium-protoporphyrin ix monomethyl ester cyclase (Fragment).;Transcript_evidence=AK061646 (DDBJ%2C Best hit);ORF_evidence=A6N1H0 (UniProt);NIAS_FLcDNA=001-036-B09;Oryzabase=8776;Expression=AK061646;TENOR=Os01t0279100-02;KEGG=Os01t0279100-02 (EC:1.14.13.81)
Chr01	irgsp1_rep	five_prime_UTR	9875693	9875694	.	+	.	Parent=Os01t0279100-02
Chr01	irgsp1_rep	CDS	9875695	9875778	.	+	0	Parent=Os01t0279100-02
Chr01	irgsp1_rep	CDS	9876001	9876264	.	+	0	Parent=Os01t0279100-02
Chr01	irgsp1_rep	three_prime_UTR	9876265	9876532	.	+	.	Parent=Os01t0279100-02
Chr01	irgsp1_rep	mRNA	9878384	9883106	.	+	.	ID=Os01t0279200-01;Name=Os01t0279200-01;Locus_id=Os01g0279200;Note=Similar to COP9 signalosome complex subunit 2.;Transcript_evidence=AK107911 (DDBJ%2C Best hit);ORF_evidence=NP_001149870.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-134-G06;Expression=AK107911;TENOR=Os01t0279200-01;KEGG=Os01t0279200-01
Chr01	irgsp1_rep	five_prime_UTR	9878384	9878524	.	+	.	Parent=Os01t0279200-01
Chr01	irgsp1_rep	CDS	9878525	9878534	.	+	0	Parent=Os01t0279200-01
Chr01	irgsp1_rep	CDS	9878623	9878715	.	+	2	Parent=Os01t0279200-01
Chr01	irgsp1_rep	CDS	9881094	9881172	.	+	2	Parent=Os01t0279200-01
Chr01	irgsp1_rep	CDS	9882495	9882735	.	+	1	Parent=Os01t0279200-01
Chr01	irgsp1_rep	CDS	9882818	9882892	.	+	0	Parent=Os01t0279200-01
Chr01	irgsp1_rep	CDS	9882984	9883106	.	+	0	Parent=Os01t0279200-01
Chr01	irgsp1_rep	mRNA	9878413	9885462	.	+	.	ID=Os01t0279200-02;Name=Os01t0279200-02;Locus_id=Os01g0279200;Note=Similar to COP9 signalosome complex subunit 2 (Signalosome subunit 2) (FUSCA protein 12) (FUSCA12).;Transcript_evidence=AK103258 (DDBJ%2C Best hit);ORF_evidence=NP_001149870.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Proteasome component (PCI) domain (IPR000717),Tetratricopeptide-like helical (IPR011990),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),PCI/PINT associated module (IPR013143);NIAS_FLcDNA=J033124C01;Expression=AK103258;TENOR=Os01t0279200-02;KEGG=Os01t0279200-02
Chr01	irgsp1_rep	five_prime_UTR	9878413	9878524	.	+	.	Parent=Os01t0279200-02
Chr01	irgsp1_rep	CDS	9878525	9878534	.	+	0	Parent=Os01t0279200-02
Chr01	irgsp1_rep	CDS	9878623	9878715	.	+	2	Parent=Os01t0279200-02
Chr01	irgsp1_rep	CDS	9881094	9881172	.	+	2	Parent=Os01t0279200-02
Chr01	irgsp1_rep	CDS	9882495	9882735	.	+	1	Parent=Os01t0279200-02
Chr01	irgsp1_rep	CDS	9882818	9882892	.	+	0	Parent=Os01t0279200-02
Chr01	irgsp1_rep	CDS	9882984	9883118	.	+	0	Parent=Os01t0279200-02
Chr01	irgsp1_rep	CDS	9883658	9883845	.	+	0	Parent=Os01t0279200-02
Chr01	irgsp1_rep	CDS	9883939	9884007	.	+	1	Parent=Os01t0279200-02
Chr01	irgsp1_rep	CDS	9884084	9884174	.	+	1	Parent=Os01t0279200-02
Chr01	irgsp1_rep	CDS	9884286	9884420	.	+	0	Parent=Os01t0279200-02
Chr01	irgsp1_rep	CDS	9884847	9884959	.	+	0	Parent=Os01t0279200-02
Chr01	irgsp1_rep	CDS	9885044	9885134	.	+	1	Parent=Os01t0279200-02
Chr01	irgsp1_rep	three_prime_UTR	9885135	9885462	.	+	.	Parent=Os01t0279200-02
Chr01	irgsp1_rep	mRNA	9884284	9885517	.	+	.	ID=Os01t0279200-03;Name=Os01t0279200-03;Locus_id=Os01g0279200;Note=Similar to COP9 signalosome complex subunit 2.;Transcript_evidence=AK063907 (DDBJ%2C Best hit);ORF_evidence=NP_001149870.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Proteasome component (PCI) domain (IPR000717),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=001-123-A01;Expression=AK063907;TENOR=Os01t0279200-03;KEGG=Os01t0279200-03
Chr01	irgsp1_rep	five_prime_UTR	9884284	9884285	.	+	.	Parent=Os01t0279200-03
Chr01	irgsp1_rep	CDS	9884286	9884420	.	+	0	Parent=Os01t0279200-03
Chr01	irgsp1_rep	CDS	9884847	9884959	.	+	0	Parent=Os01t0279200-03
Chr01	irgsp1_rep	CDS	9885044	9885134	.	+	1	Parent=Os01t0279200-03
Chr01	irgsp1_rep	three_prime_UTR	9885135	9885517	.	+	.	Parent=Os01t0279200-03
Chr01	irgsp1_rep	mRNA	9887657	9889123	.	+	.	ID=Os01t0279300-01;Name=Os01t0279300-01;Locus_id=Os01g0279300;Oryzabase Gene Symbol Synonym(s)=OsCaM3%2C OsCam3%2C CaM3;Oryzabase Gene Name Synonym(s)=calmodulin 3;Note=Similar to Calmodulin 1 (Fragment).;Transcript_evidence=AK058646 (DDBJ%2C Best hit);ORF_evidence=Q0JNL7 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=001-018-E09;Oryzabase=9335;Expression=AK058646;TENOR=Os01t0279300-01;KEGG=Os01t0279300-01
Chr01	irgsp1_rep	five_prime_UTR	9887657	9887732	.	+	.	Parent=Os01t0279300-01
Chr01	irgsp1_rep	CDS	9887733	9887808	.	+	0	Parent=Os01t0279300-01
Chr01	irgsp1_rep	CDS	9888590	9888963	.	+	2	Parent=Os01t0279300-01
Chr01	irgsp1_rep	three_prime_UTR	9888964	9889123	.	+	.	Parent=Os01t0279300-01
Chr01	irgsp1_rep	mRNA	9889550	9902737	.	-	.	ID=Os01t0279400-01;Name=Os01t0279400-01;Locus_id=Os01g0279400;CGSNL Gene Symbol=ZIFL2;CGSNL Gene Name=ZINC-INDUCED FACILITATOR-LIKE 2;Oryzabase Gene Symbol Synonym(s)=OsZIFL2%2C Os-mfs1%2C mfs1;Oryzabase Gene Name Synonym(s)=zinc-induced facilitator-like 2%2C major facilitator superfamily antiporter 1;Note=Major facilitator superfamily antiporter.;Transcript_evidence=AK065048 (DDBJ%2C Best hit);ORF_evidence=NP_001141824.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J013001I09;Oryzabase=9471;Expression=AK065048;TENOR=Os01t0279400-01;KEGG=Os01t0279400-01
Chr01	irgsp1_rep	five_prime_UTR	9902644	9902737	.	-	.	Parent=Os01t0279400-01
Chr01	irgsp1_rep	CDS	9902460	9902643	.	-	0	Parent=Os01t0279400-01
Chr01	irgsp1_rep	CDS	9893770	9893810	.	-	2	Parent=Os01t0279400-01
Chr01	irgsp1_rep	CDS	9893587	9893647	.	-	0	Parent=Os01t0279400-01
Chr01	irgsp1_rep	CDS	9893290	9893392	.	-	2	Parent=Os01t0279400-01
Chr01	irgsp1_rep	CDS	9893103	9893205	.	-	1	Parent=Os01t0279400-01
Chr01	irgsp1_rep	CDS	9892966	9893019	.	-	0	Parent=Os01t0279400-01
Chr01	irgsp1_rep	CDS	9892777	9892839	.	-	0	Parent=Os01t0279400-01
Chr01	irgsp1_rep	CDS	9892453	9892502	.	-	0	Parent=Os01t0279400-01
Chr01	irgsp1_rep	CDS	9892275	9892350	.	-	1	Parent=Os01t0279400-01
Chr01	irgsp1_rep	CDS	9891693	9891896	.	-	0	Parent=Os01t0279400-01
Chr01	irgsp1_rep	CDS	9891348	9891435	.	-	0	Parent=Os01t0279400-01
Chr01	irgsp1_rep	CDS	9891066	9891151	.	-	2	Parent=Os01t0279400-01
Chr01	irgsp1_rep	CDS	9890873	9890980	.	-	0	Parent=Os01t0279400-01
Chr01	irgsp1_rep	CDS	9890414	9890458	.	-	0	Parent=Os01t0279400-01
Chr01	irgsp1_rep	CDS	9890218	9890306	.	-	0	Parent=Os01t0279400-01
Chr01	irgsp1_rep	CDS	9890066	9890109	.	-	1	Parent=Os01t0279400-01
Chr01	irgsp1_rep	CDS	9889750	9889844	.	-	2	Parent=Os01t0279400-01
Chr01	irgsp1_rep	three_prime_UTR	9889550	9889749	.	-	.	Parent=Os01t0279400-01
Chr01	irgsp1_rep	mRNA	9892418	9896053	.	+	.	ID=Os01t0279500-01;Name=Os01t0279500-01;Locus_id=Os01g0279500;Note=Hypothetical gene.;Transcript_evidence=AK288362 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090025C16;TENOR=Os01t0279500-01;KEGG=Os01t0279500-01
Chr01	irgsp1_rep	five_prime_UTR	9892418	9895723	.	+	.	Parent=Os01t0279500-01
Chr01	irgsp1_rep	CDS	9895724	9896053	.	+	0	Parent=Os01t0279500-01
Chr01	irgsp1_rep	mRNA	9913390	9917265	.	+	.	ID=Os01t0279700-01;Name=Os01t0279700-01;Locus_id=Os01g0279700;CGSNL Gene Symbol=PT21;CGSNL Gene Name=PHOSPHATE TRANSPORTER 21;Oryzabase Gene Symbol Synonym(s)=OsPT21;Oryzabase Gene Name Synonym(s)=phosphate transporter 21;Note=Major facilitator superfamily protein.;Transcript_evidence=AK100107 (DDBJ%2C Best hit);ORF_evidence=NP_001148011.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J023004N09;Oryzabase=21404;Expression=AK100107;TENOR=Os01t0279700-01;KEGG=Os01t0279700-01
Chr01	irgsp1_rep	five_prime_UTR	9913390	9913669	.	+	.	Parent=Os01t0279700-01
Chr01	irgsp1_rep	CDS	9913670	9914080	.	+	0	Parent=Os01t0279700-01
Chr01	irgsp1_rep	CDS	9914330	9914437	.	+	0	Parent=Os01t0279700-01
Chr01	irgsp1_rep	CDS	9914541	9914696	.	+	0	Parent=Os01t0279700-01
Chr01	irgsp1_rep	CDS	9915134	9915349	.	+	0	Parent=Os01t0279700-01
Chr01	irgsp1_rep	CDS	9915460	9915669	.	+	0	Parent=Os01t0279700-01
Chr01	irgsp1_rep	CDS	9915746	9915883	.	+	0	Parent=Os01t0279700-01
Chr01	irgsp1_rep	CDS	9916100	9916201	.	+	0	Parent=Os01t0279700-01
Chr01	irgsp1_rep	CDS	9916363	9916428	.	+	0	Parent=Os01t0279700-01
Chr01	irgsp1_rep	CDS	9916532	9916616	.	+	0	Parent=Os01t0279700-01
Chr01	irgsp1_rep	CDS	9916712	9916809	.	+	2	Parent=Os01t0279700-01
Chr01	irgsp1_rep	three_prime_UTR	9916810	9917265	.	+	.	Parent=Os01t0279700-01
Chr01	irgsp1_rep	mRNA	9913527	9917318	.	+	.	ID=Os01t0279700-02;Name=Os01t0279700-02;Locus_id=Os01g0279700;CGSNL Gene Symbol=PT21;CGSNL Gene Name=PHOSPHATE TRANSPORTER 21;Oryzabase Gene Symbol Synonym(s)=OsPT21;Oryzabase Gene Name Synonym(s)=phosphate transporter 21;Note=Major facilitator superfamily protein.;Transcript_evidence=AK067683 (DDBJ%2C Best hit);ORF_evidence=NP_001148011.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J013115G11;Oryzabase=21404;Expression=AK067683;TENOR=Os01t0279700-02;KEGG=Os01t0279700-02
Chr01	irgsp1_rep	five_prime_UTR	9913527	9913669	.	+	.	Parent=Os01t0279700-02
Chr01	irgsp1_rep	CDS	9913670	9914080	.	+	0	Parent=Os01t0279700-02
Chr01	irgsp1_rep	CDS	9914330	9914437	.	+	0	Parent=Os01t0279700-02
Chr01	irgsp1_rep	CDS	9914541	9914696	.	+	0	Parent=Os01t0279700-02
Chr01	irgsp1_rep	CDS	9915134	9915349	.	+	0	Parent=Os01t0279700-02
Chr01	irgsp1_rep	CDS	9915460	9915669	.	+	0	Parent=Os01t0279700-02
Chr01	irgsp1_rep	CDS	9915746	9915883	.	+	0	Parent=Os01t0279700-02
Chr01	irgsp1_rep	CDS	9916100	9916201	.	+	0	Parent=Os01t0279700-02
Chr01	irgsp1_rep	CDS	9916363	9916428	.	+	0	Parent=Os01t0279700-02
Chr01	irgsp1_rep	CDS	9916532	9916616	.	+	0	Parent=Os01t0279700-02
Chr01	irgsp1_rep	CDS	9916712	9916809	.	+	2	Parent=Os01t0279700-02
Chr01	irgsp1_rep	three_prime_UTR	9916810	9917318	.	+	.	Parent=Os01t0279700-02
Chr01	irgsp1_rep	mRNA	9916859	9917265	.	+	.	ID=Os01t0279700-03;Name=Os01t0279700-03;Locus_id=Os01g0279700;CGSNL Gene Symbol=PT21;CGSNL Gene Name=PHOSPHATE TRANSPORTER 21;Oryzabase Gene Symbol Synonym(s)=OsPT21;Oryzabase Gene Name Synonym(s)=phosphate transporter 21;Note=Non-protein coding transcript.;Transcript_evidence=AK058762 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-001-C06;Oryzabase=21404;TENOR=Os01t0279700-03
Chr01	irgsp1_rep	exon	9916859	9917265	.	+	.	Parent=Os01t0279700-03
Chr01	irgsp1_rep	mRNA	9917593	9921565	.	-	.	ID=Os01t0279800-01;Name=Os01t0279800-01;Locus_id=Os01g0279800;Note=Similar to LRR protein.;Transcript_evidence=AK061114 (DDBJ%2C Best hit);ORF_evidence=Q84JK7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=006-207-E01;Expression=AK061114;TENOR=Os01t0279800-01;KEGG=Os01t0279800-01
Chr01	irgsp1_rep	five_prime_UTR	9921499	9921565	.	-	.	Parent=Os01t0279800-01
Chr01	irgsp1_rep	CDS	9921284	9921498	.	-	0	Parent=Os01t0279800-01
Chr01	irgsp1_rep	CDS	9919921	9919992	.	-	1	Parent=Os01t0279800-01
Chr01	irgsp1_rep	CDS	9918915	9919058	.	-	1	Parent=Os01t0279800-01
Chr01	irgsp1_rep	CDS	9918653	9918724	.	-	1	Parent=Os01t0279800-01
Chr01	irgsp1_rep	CDS	9918486	9918557	.	-	1	Parent=Os01t0279800-01
Chr01	irgsp1_rep	CDS	9917874	9917943	.	-	1	Parent=Os01t0279800-01
Chr01	irgsp1_rep	three_prime_UTR	9917593	9917873	.	-	.	Parent=Os01t0279800-01
Chr01	irgsp1_rep	mRNA	9920557	9921565	.	-	.	ID=Os01t0279800-02;Name=Os01t0279800-02;Locus_id=Os01g0279800;Note=Similar to BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1.;Transcript_evidence=AK059775 (DDBJ%2C Best hit);ORF_evidence=NP_001150725.1 (RefSeq);InterPro=Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=006-204-A06;Expression=AK059775;TENOR=Os01t0279800-02;KEGG=Os01t0279800-02
Chr01	irgsp1_rep	five_prime_UTR	9921499	9921565	.	-	.	Parent=Os01t0279800-02
Chr01	irgsp1_rep	CDS	9921280	9921498	.	-	0	Parent=Os01t0279800-02
Chr01	irgsp1_rep	three_prime_UTR	9920557	9921279	.	-	.	Parent=Os01t0279800-02
Chr01	irgsp1_rep	mRNA	9928971	9935981	.	+	.	ID=Os01t0279900-01;Name=Os01t0279900-01;Locus_id=Os01g0279900;RAP-DB Gene Symbol Synonym(s)=OsTGA5%2C OsbZIP3%2C OsHBP1b;RAP-DB Gene Name Synonym(s)=Histone gene binding protein-1b;CGSNL Gene Symbol=BZIP3;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 3;Oryzabase Gene Symbol Synonym(s)=OsbZIP03%2C OsbZIP3%2C OsHBP1b%2C HBP1b%2C OsTGA5%2C TGA5%2C OsTGA5/OsbZIP3;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 03%2C histone-gene binding protein 1b%2C Histone gene binding protein-1b%2C TGA transcription factor 5;Note=TGA transcription factor%2C bZIP transcription factor%2C Defense response%2C Multiple abiotic stress tolerance;Transcript_evidence=AK242743;ORF_evidence=Q0JNL3;GO=Biological Process: transcription%2C DNA-templated (GO:0006351),Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA-binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Basic-leucine zipper domain (IPR004827),Transcription factor TGA like domain (IPR025422);NIAS_FLcDNA=J090049N20;Manual Curation=August 7%2C 2019;Literature_PMID=31375941,30444888;Oryzabase=10094;TENOR=Os01t0279900-01;KEGG=Os01t0279900-01;Subcellular location=nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	9928971	9929298	.	+	.	Parent=Os01t0279900-01
Chr01	irgsp1_rep	five_prime_UTR	9930404	9930503	.	+	.	Parent=Os01t0279900-01
Chr01	irgsp1_rep	CDS	9930504	9930562	.	+	0	Parent=Os01t0279900-01
Chr01	irgsp1_rep	CDS	9931839	9931914	.	+	1	Parent=Os01t0279900-01
Chr01	irgsp1_rep	CDS	9931995	9932054	.	+	0	Parent=Os01t0279900-01
Chr01	irgsp1_rep	CDS	9934042	9934119	.	+	0	Parent=Os01t0279900-01
Chr01	irgsp1_rep	CDS	9934201	9934252	.	+	0	Parent=Os01t0279900-01
Chr01	irgsp1_rep	CDS	9934401	9934672	.	+	2	Parent=Os01t0279900-01
Chr01	irgsp1_rep	CDS	9935025	9935270	.	+	0	Parent=Os01t0279900-01
Chr01	irgsp1_rep	CDS	9935432	9935578	.	+	0	Parent=Os01t0279900-01
Chr01	irgsp1_rep	three_prime_UTR	9935579	9935981	.	+	.	Parent=Os01t0279900-01
Chr01	irgsp1_rep	mRNA	9936850	9947933	.	-	.	ID=Os01t0280000-01;Name=Os01t0280000-01;Locus_id=Os01g0280000;Note=Similar to Histone mRNA exonuclease 1.;Transcript_evidence=AK103348 (DDBJ%2C Best hit);ORF_evidence=B6THB1 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: exonuclease activity (GO:0004527),Molecular Function: zinc ion binding (GO:0008270);InterPro=Exonuclease (IPR006055),Zinc finger%2C GRF-type (IPR010666),Ribonuclease H-like (IPR012337),Exonuclease%2C RNase T/DNA polymerase III (IPR013520);NIAS_FLcDNA=J033126F02;TENOR=Os01t0280000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	9947842	9947933	.	-	.	Parent=Os01t0280000-01
Chr01	irgsp1_rep	CDS	9947778	9947841	.	-	0	Parent=Os01t0280000-01
Chr01	irgsp1_rep	CDS	9946154	9946737	.	-	2	Parent=Os01t0280000-01
Chr01	irgsp1_rep	CDS	9944780	9944955	.	-	0	Parent=Os01t0280000-01
Chr01	irgsp1_rep	CDS	9937250	9937730	.	-	1	Parent=Os01t0280000-01
Chr01	irgsp1_rep	three_prime_UTR	9936850	9937249	.	-	.	Parent=Os01t0280000-01
Chr01	irgsp1_rep	mRNA	9936900	9946480	.	-	.	ID=Os01t0280000-02;Name=Os01t0280000-02;Locus_id=Os01g0280000;Note=Similar to Histone mRNA exonuclease 1.;Transcript_evidence=AK062026 (DDBJ%2C Best hit);ORF_evidence=B6THB1 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: exonuclease activity (GO:0004527),Molecular Function: zinc ion binding (GO:0008270);InterPro=Exonuclease (IPR006055),Zinc finger%2C GRF-type (IPR010666),Ribonuclease H-like (IPR012337),Exonuclease%2C RNase T/DNA polymerase III (IPR013520);NIAS_FLcDNA=001-043-G05;Expression=AK062026;TENOR=Os01t0280000-02;KEGG=Os01t0280000-02
Chr01	irgsp1_rep	CDS	9946154	9946480	.	-	0	Parent=Os01t0280000-02
Chr01	irgsp1_rep	CDS	9944780	9944955	.	-	0	Parent=Os01t0280000-02
Chr01	irgsp1_rep	CDS	9937250	9937730	.	-	1	Parent=Os01t0280000-02
Chr01	irgsp1_rep	three_prime_UTR	9936900	9937249	.	-	.	Parent=Os01t0280000-02
Chr01	irgsp1_rep	mRNA	9954154	9955696	.	+	.	ID=Os01t0280200-01;Name=Os01t0280200-01;Locus_id=Os01g0280200;Note=IQ motif%2C EF-hand binding site domain containing protein.;Transcript_evidence=AK241599 (DDBJ%2C Best hit);ORF_evidence=A2ZZT9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);NIAS_FLcDNA=J065183G15;TENOR=Os01t0280200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	9954154	9954367	.	+	.	Parent=Os01t0280200-01
Chr01	irgsp1_rep	CDS	9954368	9954582	.	+	0	Parent=Os01t0280200-01
Chr01	irgsp1_rep	CDS	9954682	9954727	.	+	1	Parent=Os01t0280200-01
Chr01	irgsp1_rep	three_prime_UTR	9954728	9955696	.	+	.	Parent=Os01t0280200-01
Chr01	irgsp1_rep	mRNA	9962807	9966715	.	+	.	ID=Os01t0280400-00;Name=Os01t0280400-00;Locus_id=Os01g0280400;Note=DNA-binding protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q9MQV2 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os01t0280400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	9962807	9962841	.	+	0	Parent=Os01t0280400-00
Chr01	irgsp1_rep	CDS	9963636	9964185	.	+	1	Parent=Os01t0280400-00
Chr01	irgsp1_rep	CDS	9965465	9966715	.	+	0	Parent=Os01t0280400-00
Chr01	irgsp1_rep	mRNA	9967185	9969073	.	-	.	ID=Os01t0280500-01;Name=Os01t0280500-01;Locus_id=Os01g0280500;Note=Similar to Eukaryotic translation initiation factor 6 (eIF-6) (B4 integrin interactor) (CAB) (p27(BBP)) (B(2)GCN homolog).;Transcript_evidence=AK103139 (DDBJ%2C Best hit);ORF_evidence=B4FKD5 (UniProt);GO=Biological Process: mature ribosome assembly (GO:0042256),Molecular Function: ribosome binding (GO:0043022);InterPro=Translation initiation factor IF6 (IPR002769);NIAS_FLcDNA=J033120G02;Oryzabase=16800;Expression=AK103139;TENOR=Os01t0280500-01;KEGG=Os01t0280500-01
Chr01	irgsp1_rep	five_prime_UTR	9968941	9969073	.	-	.	Parent=Os01t0280500-01
Chr01	irgsp1_rep	CDS	9968931	9968940	.	-	0	Parent=Os01t0280500-01
Chr01	irgsp1_rep	CDS	9968707	9968803	.	-	2	Parent=Os01t0280500-01
Chr01	irgsp1_rep	CDS	9968493	9968623	.	-	1	Parent=Os01t0280500-01
Chr01	irgsp1_rep	CDS	9968069	9968200	.	-	2	Parent=Os01t0280500-01
Chr01	irgsp1_rep	CDS	9967842	9967951	.	-	2	Parent=Os01t0280500-01
Chr01	irgsp1_rep	CDS	9967472	9967732	.	-	0	Parent=Os01t0280500-01
Chr01	irgsp1_rep	three_prime_UTR	9967185	9967471	.	-	.	Parent=Os01t0280500-01
Chr01	irgsp1_rep	mRNA	9969576	9970900	.	-	.	ID=Os01t0280600-01;Name=Os01t0280600-01;Locus_id=Os01g0280600;Note=Conserved hypothetical protein.;Transcript_evidence=AK108765 (DDBJ%2C Best hit);ORF_evidence=Q7F7F8 (UniProt);NIAS_FLcDNA=002-150-G11;TENOR=Os01t0280600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	9970540	9970900	.	-	.	Parent=Os01t0280600-01
Chr01	irgsp1_rep	CDS	9970297	9970539	.	-	0	Parent=Os01t0280600-01
Chr01	irgsp1_rep	three_prime_UTR	9969576	9970296	.	-	.	Parent=Os01t0280600-01
Chr01	irgsp1_rep	mRNA	10003952	10007742	.	+	.	ID=Os01t0281000-01;Name=Os01t0281000-01;Locus_id=Os01g0281000;Oryzabase Gene Symbol Synonym(s)=OsFbox006%2C OsFbox6%2C Os_F0083%2C OsFBX5%2C OsSTA12;Oryzabase Gene Name Synonym(s)=F-box protein 6;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK064952 (DDBJ%2C Best hit);ORF_evidence=NP_001151624.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013001A01;Oryzabase=16809;Expression=AK064952;TENOR=Os01t0281000-01;KEGG=Os01t0281000-01
Chr01	irgsp1_rep	five_prime_UTR	10003952	10004667	.	+	.	Parent=Os01t0281000-01
Chr01	irgsp1_rep	CDS	10004668	10005393	.	+	0	Parent=Os01t0281000-01
Chr01	irgsp1_rep	CDS	10005796	10005875	.	+	0	Parent=Os01t0281000-01
Chr01	irgsp1_rep	CDS	10006036	10006214	.	+	1	Parent=Os01t0281000-01
Chr01	irgsp1_rep	CDS	10006371	10006445	.	+	2	Parent=Os01t0281000-01
Chr01	irgsp1_rep	CDS	10007172	10007359	.	+	2	Parent=Os01t0281000-01
Chr01	irgsp1_rep	three_prime_UTR	10007360	10007742	.	+	.	Parent=Os01t0281000-01
Chr01	irgsp1_rep	mRNA	10004574	10005089	.	-	.	ID=Os01t0281050-00;Name=Os01t0281050-00;Locus_id=Os01g0281050;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os01t0281050-00
Chr01	irgsp1_rep	CDS	10004574	10005089	.	-	0	Parent=Os01t0281050-00
Chr01	irgsp1_rep	mRNA	10008075	10011595	.	-	.	ID=Os01t0281100-01;Name=Os01t0281100-01;Locus_id=Os01g0281100;Note=Conserved hypothetical protein.;Transcript_evidence=AK109672 (DDBJ%2C Best hit);ORF_evidence=B9EVJ4 (UniProt);NIAS_FLcDNA=002-145-B03;Expression=AK109672;TENOR=Os01t0281100-01;KEGG=Os01t0281100-01
Chr01	irgsp1_rep	five_prime_UTR	10011399	10011595	.	-	.	Parent=Os01t0281100-01
Chr01	irgsp1_rep	CDS	10011393	10011398	.	-	0	Parent=Os01t0281100-01
Chr01	irgsp1_rep	CDS	10010405	10010706	.	-	0	Parent=Os01t0281100-01
Chr01	irgsp1_rep	CDS	10010004	10010277	.	-	1	Parent=Os01t0281100-01
Chr01	irgsp1_rep	CDS	10009054	10009149	.	-	0	Parent=Os01t0281100-01
Chr01	irgsp1_rep	CDS	10008846	10008964	.	-	0	Parent=Os01t0281100-01
Chr01	irgsp1_rep	CDS	10008604	10008730	.	-	1	Parent=Os01t0281100-01
Chr01	irgsp1_rep	three_prime_UTR	10008075	10008603	.	-	.	Parent=Os01t0281100-01
Chr01	irgsp1_rep	mRNA	10011875	10015468	.	-	.	ID=Os01t0281200-01;Name=Os01t0281200-01;Locus_id=Os01g0281200;CGSNL Gene Symbol=CYCB1%3B4;CGSNL Gene Name=CYCLIN-B1-4;Oryzabase Gene Symbol Synonym(s)=OsCycB1%3B4%2C Orysa%3BCycB1%3B4%2C CYCB1-3%2C OsCYCB1-3;Oryzabase Gene Name Synonym(s)=B-type cyclin 1%3B4;Note=Similar to Type B-like cyclin (Fragment).;Transcript_evidence=AK107209 (DDBJ%2C Best hit);ORF_evidence=Q0JNK6-2 (UniProt);GO=Biological Process: regulation of cyclin-dependent protein kinase activity (GO:0000079),Biological Process: regulation of cell cycle (GO:0051726),Cellular Component: nucleus (GO:0005634),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin%2C C-terminal (IPR004367),Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763),Cyclin A/B/D/E (IPR014400);NIAS_FLcDNA=002-125-B12;Oryzabase=9974;Expression=AK107209;TENOR=Os01t0281200-01;KEGG=Os01t0281200-01
Chr01	irgsp1_rep	five_prime_UTR	10015277	10015468	.	-	.	Parent=Os01t0281200-01
Chr01	irgsp1_rep	CDS	10015207	10015276	.	-	0	Parent=Os01t0281200-01
Chr01	irgsp1_rep	CDS	10014221	10014549	.	-	2	Parent=Os01t0281200-01
Chr01	irgsp1_rep	CDS	10013996	10014121	.	-	0	Parent=Os01t0281200-01
Chr01	irgsp1_rep	CDS	10013660	10013911	.	-	0	Parent=Os01t0281200-01
Chr01	irgsp1_rep	CDS	10013351	10013509	.	-	0	Parent=Os01t0281200-01
Chr01	irgsp1_rep	CDS	10013075	10013253	.	-	0	Parent=Os01t0281200-01
Chr01	irgsp1_rep	CDS	10012136	10012292	.	-	1	Parent=Os01t0281200-01
Chr01	irgsp1_rep	three_prime_UTR	10011875	10012135	.	-	.	Parent=Os01t0281200-01
Chr01	irgsp1_rep	mRNA	10012164	10014100	.	+	.	ID=Os01t0281250-00;Name=Os01t0281250-00;Locus_id=Os01g0281250;Note=Hypothetical protein.;Transcript_evidence=tplb0047b05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0281250-00
Chr01	irgsp1_rep	five_prime_UTR	10012164	10012299	.	+	.	Parent=Os01t0281250-00
Chr01	irgsp1_rep	five_prime_UTR	10013081	10013183	.	+	.	Parent=Os01t0281250-00
Chr01	irgsp1_rep	CDS	10013184	10013239	.	+	0	Parent=Os01t0281250-00
Chr01	irgsp1_rep	CDS	10013318	10013482	.	+	1	Parent=Os01t0281250-00
Chr01	irgsp1_rep	CDS	10013635	10013878	.	+	1	Parent=Os01t0281250-00
Chr01	irgsp1_rep	three_prime_UTR	10013879	10013906	.	+	.	Parent=Os01t0281250-00
Chr01	irgsp1_rep	three_prime_UTR	10013991	10014100	.	+	.	Parent=Os01t0281250-00
Chr01	irgsp1_rep	mRNA	10019633	10020376	.	-	.	ID=Os01t0281301-00;Name=Os01t0281301-00;Locus_id=Os01g0281301;Note=Protein of unknown function DUF1645 domain containing protein.;Transcript_evidence=BT065146 (DDBJ);ORF_evidence=Q9LG63 (UniProt);InterPro=Protein of unknown function DUF1645 (IPR012442);TENOR=Os01t0281301-00
Chr01	irgsp1_rep	CDS	10019633	10020376	.	-	0	Parent=Os01t0281301-00
Chr01	irgsp1_rep	mRNA	10021423	10027120	.	-	.	ID=Os01t0281400-00;Name=Os01t0281400-00;Locus_id=Os01g0281400;Note=Coatomer%2C beta subunit domain containing protein.;Transcript_evidence=tplb0016n13 (Wheat FLcDNA);ORF_evidence=Q53PC6 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: cytoplasm (GO:0005737),Cellular Component: membrane coat (GO:0030117),Cellular Component: COPI vesicle coat (GO:0030126),Molecular Function: structural molecule activity (GO:0005198),Molecular Function: binding (GO:0005488);InterPro=Clathrin/coatomer adaptor%2C adaptin-like%2C N-terminal (IPR002553),Coatomer%2C beta subunit%2C C-terminal (IPR011710),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),Coatomer%2C beta subunit (IPR016460);TENOR=Os01t0281400-00;KEGG=Os01t0281400-00
Chr01	irgsp1_rep	five_prime_UTR	10026990	10027120	.	-	.	Parent=Os01t0281400-00
Chr01	irgsp1_rep	CDS	10024938	10026989	.	-	0	Parent=Os01t0281400-00
Chr01	irgsp1_rep	CDS	10023576	10024085	.	-	0	Parent=Os01t0281400-00
Chr01	irgsp1_rep	CDS	10022770	10022855	.	-	0	Parent=Os01t0281400-00
Chr01	irgsp1_rep	CDS	10021861	10022065	.	-	1	Parent=Os01t0281400-00
Chr01	irgsp1_rep	three_prime_UTR	10021423	10021860	.	-	.	Parent=Os01t0281400-00
Chr01	irgsp1_rep	mRNA	10048273	10050309	.	-	.	ID=Os01t0281600-01;Name=Os01t0281600-01;Locus_id=Os01g0281600;CGSNL Gene Symbol=ENODL4;CGSNL Gene Name=EARLY NODULIN LIKE PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OsENODL4;Oryzabase Gene Name Synonym(s)=early nodulin-like protein 4;Note=Cupredoxin domain containing protein.;Transcript_evidence=AK062646 (DDBJ%2C Best hit);ORF_evidence=NP_563820.1 (RefSeq);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);NIAS_FLcDNA=001-105-E02;Oryzabase=9729;Expression=AK062646;TENOR=Os01t0281600-01;KEGG=Os01t0281600-01
Chr01	irgsp1_rep	five_prime_UTR	10050161	10050309	.	-	.	Parent=Os01t0281600-01
Chr01	irgsp1_rep	CDS	10049923	10050160	.	-	0	Parent=Os01t0281600-01
Chr01	irgsp1_rep	CDS	10048441	10048958	.	-	2	Parent=Os01t0281600-01
Chr01	irgsp1_rep	three_prime_UTR	10048273	10048440	.	-	.	Parent=Os01t0281600-01
Chr01	irgsp1_rep	mRNA	10074477	10079135	.	+	.	ID=Os01t0282251-01;Name=Os01t0282251-01;Locus_id=Os01g0282251;Note=Similar to CAA30375.1 protein.;Transcript_evidence=AK288698 (DDBJ%2C Best hit);ORF_evidence=Q9ST92 (UniProt);NIAS_FLcDNA=J090061C07;TENOR=Os01t0282251-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	10074477	10078476	.	+	.	Parent=Os01t0282251-01
Chr01	irgsp1_rep	CDS	10078477	10078614	.	+	0	Parent=Os01t0282251-01
Chr01	irgsp1_rep	three_prime_UTR	10078615	10079135	.	+	.	Parent=Os01t0282251-01
Chr01	irgsp1_rep	mRNA	10099352	10102948	.	-	.	ID=Os01t0282800-02;Name=Os01t0282800-02;Locus_id=Os01g0282800;CGSNL Gene Symbol=TUB1;CGSNL Gene Name=BETA-TUBULIN 1;Oryzabase Gene Symbol Synonym(s)=OsTUB1%2C TUBB1%2C OSTB-34;Oryzabase Gene Name Synonym(s)=beta tubulin 1%2C Tubulin beta-1 chain%2C Beta-1-tubulin;Note=Similar to Tubulin beta-5 chain (Beta-5 tubulin).;Transcript_evidence=AK122127 (DDBJ%2C Best hit),AK065323 (DDBJ%2C Best hit);ORF_evidence=NP_001105458.1 (RefSeq);NIAS_FLcDNA=J033132F08,J013002P20;Oryzabase=2956;Expression=AK122127;TENOR=Os01t0282800-02;KEGG=Os01t0282800-02
Chr01	irgsp1_rep	five_prime_UTR	10102870	10102948	.	-	.	Parent=Os01t0282800-02
Chr01	irgsp1_rep	five_prime_UTR	10102274	10102289	.	-	.	Parent=Os01t0282800-02
Chr01	irgsp1_rep	CDS	10101880	10102273	.	-	0	Parent=Os01t0282800-02
Chr01	irgsp1_rep	CDS	10100897	10101166	.	-	2	Parent=Os01t0282800-02
Chr01	irgsp1_rep	CDS	10099683	10100362	.	-	2	Parent=Os01t0282800-02
Chr01	irgsp1_rep	three_prime_UTR	10099352	10099682	.	-	.	Parent=Os01t0282800-02
Chr01	irgsp1_rep	mRNA	10099705	10102286	.	+	.	ID=Os01t0282866-00;Name=Os01t0282866-00;Locus_id=Os01g0282866;Note=Hypothetical protein.;Transcript_evidence=tplb0045b10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0282866-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	10099705	10099838	.	+	.	Parent=Os01t0282866-00
Chr01	irgsp1_rep	CDS	10099839	10100364	.	+	0	Parent=Os01t0282866-00
Chr01	irgsp1_rep	CDS	10100899	10101035	.	+	2	Parent=Os01t0282866-00
Chr01	irgsp1_rep	three_prime_UTR	10101036	10101164	.	+	.	Parent=Os01t0282866-00
Chr01	irgsp1_rep	three_prime_UTR	10101878	10102286	.	+	.	Parent=Os01t0282866-00
Chr01	irgsp1_rep	mRNA	10113431	10119022	.	-	.	ID=Os01t0283000-01;Name=Os01t0283000-01;Locus_id=Os01g0283000;Note=Conserved hypothetical protein.;Transcript_evidence=AK288302 (DDBJ%2C Best hit);ORF_evidence=NP_001042762.1 (RefSeq);NIAS_FLcDNA=J090020E11;TENOR=Os01t0283000-01;KEGG=Os01t0283000-01
Chr01	irgsp1_rep	five_prime_UTR	10118966	10119022	.	-	.	Parent=Os01t0283000-01
Chr01	irgsp1_rep	CDS	10118389	10118965	.	-	0	Parent=Os01t0283000-01
Chr01	irgsp1_rep	CDS	10115827	10115990	.	-	2	Parent=Os01t0283000-01
Chr01	irgsp1_rep	CDS	10114581	10115669	.	-	0	Parent=Os01t0283000-01
Chr01	irgsp1_rep	three_prime_UTR	10113431	10114580	.	-	.	Parent=Os01t0283000-01
Chr01	irgsp1_rep	mRNA	10113931	10118998	.	-	.	ID=Os01t0283000-02;Name=Os01t0283000-02;Locus_id=Os01g0283000;Note=Conserved hypothetical protein.;Transcript_evidence=AK073165 (DDBJ%2C Best hit);ORF_evidence=A2WNJ8 (UniProt);NIAS_FLcDNA=J033023G08;Expression=AK073165;TENOR=Os01t0283000-02;KEGG=Os01t0283000-02
Chr01	irgsp1_rep	five_prime_UTR	10118966	10118998	.	-	.	Parent=Os01t0283000-02
Chr01	irgsp1_rep	CDS	10118389	10118965	.	-	0	Parent=Os01t0283000-02
Chr01	irgsp1_rep	CDS	10115827	10115990	.	-	2	Parent=Os01t0283000-02
Chr01	irgsp1_rep	CDS	10114581	10115669	.	-	0	Parent=Os01t0283000-02
Chr01	irgsp1_rep	three_prime_UTR	10113931	10114580	.	-	.	Parent=Os01t0283000-02
Chr01	irgsp1_rep	mRNA	10119242	10123678	.	+	.	ID=Os01t0283100-01;Name=Os01t0283100-01;Locus_id=Os01g0283100;Note=Similar to Ferripyochelin-binding protein-like.;Transcript_evidence=AK104205 (DDBJ%2C Best hit),AK060908 (DDBJ%2C Best hit),AK071713 (DDBJ%2C Best hit);ORF_evidence=B6TDS2 (UniProt);GO=Molecular Function: transferase activity (GO:0016740);InterPro=Bacterial transferase hexapeptide repeat (IPR001451),Trimeric LpxA-like (IPR011004);NIAS_FLcDNA=006-304-F03,001-035-F08,J023109L19;Expression=AK104205;TENOR=Os01t0283100-01;KEGG=Os01t0283100-01
Chr01	irgsp1_rep	five_prime_UTR	10119242	10119390	.	+	.	Parent=Os01t0283100-01
Chr01	irgsp1_rep	CDS	10119391	10119505	.	+	0	Parent=Os01t0283100-01
Chr01	irgsp1_rep	CDS	10121307	10121450	.	+	2	Parent=Os01t0283100-01
Chr01	irgsp1_rep	CDS	10122458	10122583	.	+	2	Parent=Os01t0283100-01
Chr01	irgsp1_rep	CDS	10122809	10122960	.	+	2	Parent=Os01t0283100-01
Chr01	irgsp1_rep	CDS	10123279	10123533	.	+	0	Parent=Os01t0283100-01
Chr01	irgsp1_rep	three_prime_UTR	10123534	10123678	.	+	.	Parent=Os01t0283100-01
Chr01	irgsp1_rep	mRNA	10119294	10123678	.	+	.	ID=Os01t0283100-02;Name=Os01t0283100-02;Locus_id=Os01g0283100;Note=Similar to Ferripyochelin-binding protein-like.;Transcript_evidence=AK122051 (DDBJ%2C Best hit);ORF_evidence=B6TDS2 (UniProt);GO=Molecular Function: transferase activity (GO:0016740);InterPro=Bacterial transferase hexapeptide repeat (IPR001451),Trimeric LpxA-like (IPR011004);NIAS_FLcDNA=J033114G12;Expression=AK122051;TENOR=Os01t0283100-02;KEGG=Os01t0283100-02
Chr01	irgsp1_rep	five_prime_UTR	10119294	10119390	.	+	.	Parent=Os01t0283100-02
Chr01	irgsp1_rep	CDS	10119391	10119505	.	+	0	Parent=Os01t0283100-02
Chr01	irgsp1_rep	CDS	10121307	10121450	.	+	2	Parent=Os01t0283100-02
Chr01	irgsp1_rep	CDS	10122458	10122583	.	+	2	Parent=Os01t0283100-02
Chr01	irgsp1_rep	CDS	10122809	10122960	.	+	2	Parent=Os01t0283100-02
Chr01	irgsp1_rep	CDS	10123279	10123533	.	+	0	Parent=Os01t0283100-02
Chr01	irgsp1_rep	three_prime_UTR	10123534	10123678	.	+	.	Parent=Os01t0283100-02
Chr01	irgsp1_rep	mRNA	10134096	10135327	.	+	.	ID=Os01t0283300-01;Name=Os01t0283300-01;Locus_id=Os01g0283300;Note=Conserved hypothetical protein.;Transcript_evidence=AK068117 (DDBJ%2C Best hit);ORF_evidence=A2WNK0 (UniProt);NIAS_FLcDNA=J013134A06;Oryzabase=23578;Expression=AK068117;TENOR=Os01t0283300-01;KEGG=Os01t0283300-01
Chr01	irgsp1_rep	five_prime_UTR	10134096	10134303	.	+	.	Parent=Os01t0283300-01
Chr01	irgsp1_rep	CDS	10134304	10135125	.	+	0	Parent=Os01t0283300-01
Chr01	irgsp1_rep	three_prime_UTR	10135126	10135327	.	+	.	Parent=Os01t0283300-01
Chr01	irgsp1_rep	mRNA	10134221	10135325	.	+	.	ID=Os01t0283300-02;Name=Os01t0283300-02;Locus_id=Os01g0283300;Note=Conserved hypothetical protein.;Transcript_evidence=AK104498 (DDBJ%2C Best hit),AK104803 (DDBJ%2C Best hit),AK106177 (DDBJ%2C Best hit);ORF_evidence=A2WNK0 (UniProt);NIAS_FLcDNA=006-302-D10,001-040-C08,001-208-C09;Oryzabase=23578;TENOR=Os01t0283300-02
Chr01	irgsp1_rep	five_prime_UTR	10134221	10134303	.	+	.	Parent=Os01t0283300-02
Chr01	irgsp1_rep	CDS	10134304	10135125	.	+	0	Parent=Os01t0283300-02
Chr01	irgsp1_rep	three_prime_UTR	10135126	10135325	.	+	.	Parent=Os01t0283300-02
Chr01	irgsp1_rep	mRNA	10136482	10137054	.	+	.	ID=Os01t0283400-01;Name=Os01t0283400-01;Locus_id=Os01g0283400;Note=Conserved hypothetical protein.;Transcript_evidence=AK119993 (DDBJ%2C Best hit);ORF_evidence=A2WNK1 (UniProt);NIAS_FLcDNA=002-184-G09;Expression=AK119993;TENOR=Os01t0283400-01;KEGG=Os01t0283400-01
Chr01	irgsp1_rep	five_prime_UTR	10136482	10136610	.	+	.	Parent=Os01t0283400-01
Chr01	irgsp1_rep	CDS	10136611	10136943	.	+	0	Parent=Os01t0283400-01
Chr01	irgsp1_rep	three_prime_UTR	10136944	10137054	.	+	.	Parent=Os01t0283400-01
Chr01	irgsp1_rep	mRNA	10139192	10140166	.	-	.	ID=Os01t0283500-01;Name=Os01t0283500-01;Locus_id=Os01g0283500;Oryzabase Gene Symbol Synonym(s)=OsRhmbd3%2C RHMBD3;Oryzabase Gene Name Synonym(s)=Rhomboid 3%2C RHOMBOID 3;Note=Similar to predicted protein.;Transcript_evidence=AK107821 (DDBJ%2C Best hit);ORF_evidence=NP_850606.1 (RefSeq);NIAS_FLcDNA=002-133-G01;Oryzabase=20059;Expression=AK107821;TENOR=Os01t0283500-01;KEGG=Os01t0283500-01
Chr01	irgsp1_rep	five_prime_UTR	10140076	10140166	.	-	.	Parent=Os01t0283500-01
Chr01	irgsp1_rep	CDS	10139767	10140075	.	-	0	Parent=Os01t0283500-01
Chr01	irgsp1_rep	three_prime_UTR	10139192	10139766	.	-	.	Parent=Os01t0283500-01
Chr01	irgsp1_rep	mRNA	10137726	10140159	.	-	.	ID=Os01t0283500-02;Name=Os01t0283500-02;Locus_id=Os01g0283500;Oryzabase Gene Symbol Synonym(s)=OsRhmbd3%2C RHMBD3;Oryzabase Gene Name Synonym(s)=Rhomboid 3%2C RHOMBOID 3;Note=Peptidase S54%2C rhomboid domain containing protein.;Transcript_evidence=AK064158 (DDBJ%2C Best hit);ORF_evidence=NP_850606.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Cellular Component: integral to membrane (GO:0016021),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RanBP2-type (IPR001876),Peptidase S54%2C rhomboid domain (IPR022764);NIAS_FLcDNA=002-103-F06;Oryzabase=20059;Expression=AK064158;TENOR=Os01t0283500-02;KEGG=Os01t0283500-02
Chr01	irgsp1_rep	five_prime_UTR	10140076	10140159	.	-	.	Parent=Os01t0283500-02
Chr01	irgsp1_rep	CDS	10139815	10140075	.	-	0	Parent=Os01t0283500-02
Chr01	irgsp1_rep	CDS	10138034	10138825	.	-	0	Parent=Os01t0283500-02
Chr01	irgsp1_rep	three_prime_UTR	10137726	10138033	.	-	.	Parent=Os01t0283500-02
Chr01	irgsp1_rep	mRNA	10144374	10146312	.	+	.	ID=Os01t0283600-00;Name=Os01t0283600-00;Locus_id=Os01g0283600;CGSNL Gene Symbol=CCR4;CGSNL Gene Name=CINNAMOYL-COA REDUCTASE 4;Oryzabase Gene Symbol Synonym(s)=OsCCR4%2C OsCCR1%2C CCR1;Oryzabase Gene Name Synonym(s)=Cinnamoyl-CoA reductase 4;Note=Similar to Cinnamoyl CoA reductase.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8VXA7 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);Oryzabase=22239;TENOR=Os01t0283600-00;KEGG=Os01t0283600-00
Chr01	irgsp1_rep	CDS	10144374	10144494	.	+	0	Parent=Os01t0283600-00
Chr01	irgsp1_rep	CDS	10144735	10144889	.	+	2	Parent=Os01t0283600-00
Chr01	irgsp1_rep	CDS	10145219	10145401	.	+	0	Parent=Os01t0283600-00
Chr01	irgsp1_rep	CDS	10145615	10145967	.	+	0	Parent=Os01t0283600-00
Chr01	irgsp1_rep	CDS	10146144	10146312	.	+	1	Parent=Os01t0283600-00
Chr01	irgsp1_rep	mRNA	10148777	10152280	.	+	.	ID=Os01t0283700-01;Name=Os01t0283700-01;Locus_id=Os01g0283700;CGSNL Gene Symbol=CCR5;CGSNL Gene Name=CINNAMOYL-COA REDUCTASE 5;Oryzabase Gene Symbol Synonym(s)=OsCCR5%2C OsCCR2%2C CCR2;Oryzabase Gene Name Synonym(s)=Cinnamoyl-CoA reductase 5;Note=Similar to Cinnamoyl-CoA reductase (EC 1.2.1.44).;Transcript_evidence=AK107149 (DDBJ%2C Best hit);ORF_evidence=Q8VXA7 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=002-124-D12;Oryzabase=22240;Expression=AK107149;TENOR=Os01t0283700-01;KEGG=Os01t0283700-01 (EC:1.2.1.44)
Chr01	irgsp1_rep	five_prime_UTR	10148777	10148867	.	+	.	Parent=Os01t0283700-01
Chr01	irgsp1_rep	CDS	10148868	10148991	.	+	0	Parent=Os01t0283700-01
Chr01	irgsp1_rep	CDS	10149795	10149949	.	+	2	Parent=Os01t0283700-01
Chr01	irgsp1_rep	CDS	10150061	10150243	.	+	0	Parent=Os01t0283700-01
Chr01	irgsp1_rep	CDS	10151372	10151724	.	+	0	Parent=Os01t0283700-01
Chr01	irgsp1_rep	CDS	10151960	10152131	.	+	1	Parent=Os01t0283700-01
Chr01	irgsp1_rep	three_prime_UTR	10152132	10152280	.	+	.	Parent=Os01t0283700-01
Chr01	irgsp1_rep	mRNA	10164402	10165541	.	+	.	ID=Os01t0284300-00;Name=Os01t0284300-00;Locus_id=Os01g0284300;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=FP096351 (DDBJ);ORF_evidence=Q9AQV3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os01t0284300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	10164402	10165505	.	+	0	Parent=Os01t0284300-00
Chr01	irgsp1_rep	three_prime_UTR	10165506	10165541	.	+	.	Parent=Os01t0284300-00
Chr01	irgsp1_rep	mRNA	10167946	10168997	.	-	.	ID=Os01t0284500-01;Name=Os01t0284500-01;Locus_id=Os01g0284500;Oryzabase Gene Symbol Synonym(s)=GER4%2C OsGLP1-2%2C GLP1-2%2C OsGLP1-1%2C GLP1-1;Oryzabase Gene Name Synonym(s)=germin-like protein 4%2C german-like protein 1-2;Note=Similar to Nectarin 1 precursor (EC 1.15.1.1) (Superoxide dismutase [Mn]).;Transcript_evidence=AK061164 (DDBJ%2C Best hit);ORF_evidence=Q7F731 (UniProt);GO=Cellular Component: apoplast (GO:0048046),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),Germin%2C manganese binding site (IPR019780);NIAS_FLcDNA=006-209-A06;Oryzabase=15704;Expression=AK061164;TENOR=Os01t0284500-01;KEGG=Os01t0284500-01 (EC:1.15.1.1)
Chr01	irgsp1_rep	five_prime_UTR	10168927	10168997	.	-	.	Parent=Os01t0284500-01
Chr01	irgsp1_rep	CDS	10168806	10168926	.	-	0	Parent=Os01t0284500-01
Chr01	irgsp1_rep	CDS	10168149	10168678	.	-	2	Parent=Os01t0284500-01
Chr01	irgsp1_rep	three_prime_UTR	10167946	10168148	.	-	.	Parent=Os01t0284500-01
Chr01	irgsp1_rep	mRNA	10193658	10196611	.	+	.	ID=Os01t0284700-01;Name=Os01t0284700-01;Locus_id=Os01g0284700;CGSNL Gene Symbol=CYP20-3;CGSNL Gene Name=CYCLOPHILIN 20-3;Oryzabase Gene Symbol Synonym(s)=OsCYP20-3%2C OsCYP-5;Oryzabase Gene Name Synonym(s)=cyclophilin 20-3%2C cyclophilin 5;Note=Similar to Peptidyl-prolyl cis-trans isomerase.;Transcript_evidence=AK243124 (DDBJ%2C Best hit);ORF_evidence=B8ACM2 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);InterPro=Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type (IPR002130),Cyclophilin-like (IPR015891),Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type%2C conserved site (IPR020892);NIAS_FLcDNA=J100029E10;Oryzabase=10061;TENOR=Os01t0284700-01;KEGG=Os01t0284700-01 (EC:5.2.1.8)
Chr01	irgsp1_rep	five_prime_UTR	10193658	10193716	.	+	.	Parent=Os01t0284700-01
Chr01	irgsp1_rep	CDS	10193717	10193900	.	+	0	Parent=Os01t0284700-01
Chr01	irgsp1_rep	CDS	10194007	10194153	.	+	2	Parent=Os01t0284700-01
Chr01	irgsp1_rep	CDS	10194255	10194343	.	+	2	Parent=Os01t0284700-01
Chr01	irgsp1_rep	CDS	10194933	10194995	.	+	0	Parent=Os01t0284700-01
Chr01	irgsp1_rep	three_prime_UTR	10194996	10195256	.	+	.	Parent=Os01t0284700-01
Chr01	irgsp1_rep	three_prime_UTR	10195531	10195616	.	+	.	Parent=Os01t0284700-01
Chr01	irgsp1_rep	three_prime_UTR	10196244	10196611	.	+	.	Parent=Os01t0284700-01
Chr01	irgsp1_rep	mRNA	10200477	10203472	.	-	.	ID=Os01t0284900-01;Name=Os01t0284900-01;Locus_id=Os01g0284900;Note=Conserved hypothetical protein.;Transcript_evidence=AK106618 (DDBJ%2C Best hit);ORF_evidence=A2WNL0 (UniProt);NIAS_FLcDNA=002-113-A09;Expression=AK106618;TENOR=Os01t0284900-01;KEGG=Os01t0284900-01
Chr01	irgsp1_rep	five_prime_UTR	10203381	10203472	.	-	.	Parent=Os01t0284900-01
Chr01	irgsp1_rep	CDS	10202573	10203380	.	-	0	Parent=Os01t0284900-01
Chr01	irgsp1_rep	CDS	10201009	10201094	.	-	2	Parent=Os01t0284900-01
Chr01	irgsp1_rep	three_prime_UTR	10200477	10201008	.	-	.	Parent=Os01t0284900-01
Chr01	irgsp1_rep	mRNA	10214072	10217665	.	+	.	ID=Os01t0285200-01;Name=Os01t0285200-01;Locus_id=Os01g0285200;Note=Conserved hypothetical protein.;Transcript_evidence=AK241928 (DDBJ%2C Best hit);ORF_evidence=A2WNL3 (UniProt);NIAS_FLcDNA=J075078D13;TENOR=Os01t0285200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	10214072	10214294	.	+	.	Parent=Os01t0285200-01
Chr01	irgsp1_rep	CDS	10214295	10214642	.	+	0	Parent=Os01t0285200-01
Chr01	irgsp1_rep	three_prime_UTR	10214643	10217665	.	+	.	Parent=Os01t0285200-01
Chr01	irgsp1_rep	mRNA	10217782	10219691	.	-	.	ID=Os01t0285300-01;Name=Os01t0285300-01;Locus_id=Os01g0285300;RAP-DB Gene Symbol Synonym(s)=MYB61%2C OsMYB55/61;Oryzabase Gene Symbol Synonym(s)=OsMYB55/61%2C OsMYB55%2C MYB55%2C OsMYB61%2C MYB61%2C OsMYB61a%2C MYB61a;Oryzabase Gene Name Synonym(s)=myb transcription factor 55/61%2C transcription factor MYB55/61;Note=MYB transcription factor%2C Regulation of cellulose synthesis%2C Promotion of nitrogen utilization and biomass production%2C Secondary cell wall formation;Transcript_evidence=AK111803;ORF_evidence=Q9AQV2;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeobox-like domain superfamily (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930);NIAS_FLcDNA=J013087D08;Manual Curation=October 20%2C 2020;Literature_PMID=33060584,24089432,26002868;Oryzabase=15017;Expression=AK111803;TENOR=Os01t0285300-01;KEGG=Os01t0285300-01;Subcellular location=nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	10219421	10219691	.	-	.	Parent=Os01t0285300-01
Chr01	irgsp1_rep	CDS	10219288	10219420	.	-	0	Parent=Os01t0285300-01
Chr01	irgsp1_rep	CDS	10219044	10219173	.	-	2	Parent=Os01t0285300-01
Chr01	irgsp1_rep	CDS	10217919	10218942	.	-	1	Parent=Os01t0285300-01
Chr01	irgsp1_rep	three_prime_UTR	10217782	10217918	.	-	.	Parent=Os01t0285300-01
Chr01	irgsp1_rep	mRNA	10264587	10267953	.	+	.	ID=Os01t0286000-01;Name=Os01t0286000-01;Locus_id=Os01g0286000;Note=Snf7 family protein.;Transcript_evidence=AK109824 (DDBJ%2C Best hit);ORF_evidence=A2ZRY2 (UniProt);GO=Biological Process: protein transport (GO:0015031);InterPro=Snf7 (IPR005024);NIAS_FLcDNA=002-148-B01;Expression=AK109824;TENOR=Os01t0286000-01;KEGG=Os01t0286000-01
Chr01	irgsp1_rep	five_prime_UTR	10264587	10264608	.	+	.	Parent=Os01t0286000-01
Chr01	irgsp1_rep	CDS	10264609	10264833	.	+	0	Parent=Os01t0286000-01
Chr01	irgsp1_rep	CDS	10264938	10265000	.	+	0	Parent=Os01t0286000-01
Chr01	irgsp1_rep	CDS	10265079	10265240	.	+	0	Parent=Os01t0286000-01
Chr01	irgsp1_rep	CDS	10265331	10265513	.	+	0	Parent=Os01t0286000-01
Chr01	irgsp1_rep	CDS	10265600	10265730	.	+	0	Parent=Os01t0286000-01
Chr01	irgsp1_rep	CDS	10266175	10266343	.	+	1	Parent=Os01t0286000-01
Chr01	irgsp1_rep	CDS	10266448	10266577	.	+	0	Parent=Os01t0286000-01
Chr01	irgsp1_rep	CDS	10267626	10267822	.	+	2	Parent=Os01t0286000-01
Chr01	irgsp1_rep	three_prime_UTR	10267823	10267953	.	+	.	Parent=Os01t0286000-01
Chr01	irgsp1_rep	mRNA	10271157	10274304	.	-	.	ID=Os01t0286100-01;Name=Os01t0286100-01;Locus_id=Os01g0286100;RAP-DB Gene Symbol Synonym(s)=PIL15%2C OsPIL15%2C OsbHLH105;RAP-DB Gene Name Synonym(s)=PHYTOCHROME INTERACTING FACTOR-LIKE 15%2C phytoChrome-interacting factor-like protein 15;CGSNL Gene Symbol=PIL15;CGSNL Gene Name=PHYTOCHROME INTERACTING FACTOR-LIKE 15;Oryzabase Gene Symbol Synonym(s)=OsPIL15%2C OsbHLH105%2C PIF3%2C OsPIF3;Oryzabase Gene Name Synonym(s)=phytoChrome-interacting factor-like protein 15%2C PhytoChrome interacting factor 3;Note=PhytoChrome-interacting factor-like protein%2C Basic helix-loop-helix factor%2C Repression of seedling growth in the dark;Transcript_evidence=AK102252;ORF_evidence=Q0JNI9;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);NIAS_FLcDNA=J033088H11;Manual Curation=January 18%2C 2017;Literature_PMID=24279300;Oryzabase=14337;TENOR=Os01t0286100-01
Chr01	irgsp1_rep	five_prime_UTR	10274022	10274304	.	-	.	Parent=Os01t0286100-01
Chr01	irgsp1_rep	CDS	10274020	10274021	.	-	0	Parent=Os01t0286100-01
Chr01	irgsp1_rep	CDS	10272825	10273911	.	-	1	Parent=Os01t0286100-01
Chr01	irgsp1_rep	CDS	10272642	10272734	.	-	0	Parent=Os01t0286100-01
Chr01	irgsp1_rep	CDS	10272415	10272480	.	-	0	Parent=Os01t0286100-01
Chr01	irgsp1_rep	CDS	10272262	10272327	.	-	0	Parent=Os01t0286100-01
Chr01	irgsp1_rep	CDS	10271683	10272168	.	-	0	Parent=Os01t0286100-01
Chr01	irgsp1_rep	CDS	10271473	10271586	.	-	0	Parent=Os01t0286100-01
Chr01	irgsp1_rep	three_prime_UTR	10271157	10271472	.	-	.	Parent=Os01t0286100-01
Chr01	irgsp1_rep	mRNA	10272708	10275638	.	+	.	ID=Os01t0286200-01;Name=Os01t0286200-01;Locus_id=Os01g0286200;Note=Hypothetical protein.;Transcript_evidence=AK111156 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-176-G11;Expression=AK111156;TENOR=Os01t0286200-01;KEGG=Os01t0286200-01
Chr01	irgsp1_rep	five_prime_UTR	10272708	10273610	.	+	.	Parent=Os01t0286200-01
Chr01	irgsp1_rep	CDS	10273611	10274306	.	+	0	Parent=Os01t0286200-01
Chr01	irgsp1_rep	three_prime_UTR	10274307	10274416	.	+	.	Parent=Os01t0286200-01
Chr01	irgsp1_rep	three_prime_UTR	10274547	10275638	.	+	.	Parent=Os01t0286200-01
Chr01	irgsp1_rep	mRNA	10289186	10289952	.	-	.	ID=Os01t0286500-00;Name=Os01t0286500-00;Locus_id=Os01g0286500;Note=Conserved hypothetical protein.;Transcript_evidence=AK111088 (DDBJ%2C Secondary hit);ORF_evidence=B8B4L4 (UniProt);TENOR=Os01t0286500-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	10289863	10289952	.	-	.	Parent=Os01t0286500-00
Chr01	irgsp1_rep	five_prime_UTR	10289724	10289821	.	-	.	Parent=Os01t0286500-00
Chr01	irgsp1_rep	five_prime_UTR	10289549	10289695	.	-	.	Parent=Os01t0286500-00
Chr01	irgsp1_rep	five_prime_UTR	10289495	10289495	.	-	.	Parent=Os01t0286500-00
Chr01	irgsp1_rep	CDS	10289294	10289494	.	-	0	Parent=Os01t0286500-00
Chr01	irgsp1_rep	three_prime_UTR	10289186	10289293	.	-	.	Parent=Os01t0286500-00
Chr01	irgsp1_rep	mRNA	10291818	10292251	.	-	.	ID=Os01t0286550-00;Name=Os01t0286550-00;Locus_id=Os01g0286550;Note=Hypothetical gene.;Transcript_evidence=EU943867 (DDBJ);ORF_evidence=GeneMark;TENOR=Os01t0286550-00;KEGG=Os01t0286550-00
Chr01	irgsp1_rep	five_prime_UTR	10292244	10292251	.	-	.	Parent=Os01t0286550-00
Chr01	irgsp1_rep	CDS	10291818	10292243	.	-	0	Parent=Os01t0286550-00
Chr01	irgsp1_rep	mRNA	10291889	10295449	.	+	.	ID=Os01t0286600-01;Name=Os01t0286600-01;Locus_id=Os01g0286600;Oryzabase Gene Symbol Synonym(s)=PPX%2C PPO1;Oryzabase Gene Name Synonym(s)=Proporphyrinogen oxidase%2C protoporphyrinogen oxidase 1;Note=Similar to Plastidal protoporphyrinogen oxidase.;Transcript_evidence=AK288024 (DDBJ%2C Best hit);ORF_evidence=Q9AR38 (UniProt);GO=Biological Process: porphyrin-containing compound biosynthetic process (GO:0006779),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxygen-dependent protoporphyrinogen oxidase activity (GO:0004729),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Amine oxidase (IPR002937),Protoporphyrinogen oxidase (IPR004572),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J075128A03;Oryzabase=19973;TENOR=Os01t0286600-01;KEGG=Os01t0286600-01 (EC:1.3.3.4)
Chr01	irgsp1_rep	five_prime_UTR	10291889	10291956	.	+	.	Parent=Os01t0286600-01
Chr01	irgsp1_rep	CDS	10291957	10292331	.	+	0	Parent=Os01t0286600-01
Chr01	irgsp1_rep	CDS	10292421	10292606	.	+	0	Parent=Os01t0286600-01
Chr01	irgsp1_rep	CDS	10292688	10292772	.	+	0	Parent=Os01t0286600-01
Chr01	irgsp1_rep	CDS	10292847	10292994	.	+	2	Parent=Os01t0286600-01
Chr01	irgsp1_rep	CDS	10293069	10293149	.	+	1	Parent=Os01t0286600-01
Chr01	irgsp1_rep	CDS	10293575	10293746	.	+	1	Parent=Os01t0286600-01
Chr01	irgsp1_rep	CDS	10294308	10294467	.	+	0	Parent=Os01t0286600-01
Chr01	irgsp1_rep	CDS	10294600	10294703	.	+	2	Parent=Os01t0286600-01
Chr01	irgsp1_rep	CDS	10294903	10295202	.	+	0	Parent=Os01t0286600-01
Chr01	irgsp1_rep	three_prime_UTR	10295203	10295449	.	+	.	Parent=Os01t0286600-01
Chr01	irgsp1_rep	mRNA	10312342	10314826	.	+	.	ID=Os01t0286900-01;Name=Os01t0286900-01;Locus_id=Os01g0286900;CGSNL Gene Symbol=IAA4;Oryzabase Gene Symbol Synonym(s)=OsIAA4;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 4;Note=Similar to Auxin-responsive protein IAA31 (Indoleacetic acid-induced protein 31).;Transcript_evidence=AK103865 (DDBJ%2C Best hit);ORF_evidence=A2ZRY8 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Aux/IAA-ARF-dimerisation (IPR011525);NIAS_FLcDNA=J033149F09;Oryzabase=10895;Expression=AK103865;TENOR=Os01t0286900-01;KEGG=Os01t0286900-01
Chr01	irgsp1_rep	five_prime_UTR	10312342	10312547	.	+	.	Parent=Os01t0286900-01
Chr01	irgsp1_rep	CDS	10312548	10312582	.	+	0	Parent=Os01t0286900-01
Chr01	irgsp1_rep	CDS	10313719	10313864	.	+	1	Parent=Os01t0286900-01
Chr01	irgsp1_rep	CDS	10314266	10314377	.	+	2	Parent=Os01t0286900-01
Chr01	irgsp1_rep	CDS	10314467	10314521	.	+	1	Parent=Os01t0286900-01
Chr01	irgsp1_rep	three_prime_UTR	10314522	10314826	.	+	.	Parent=Os01t0286900-01
Chr01	irgsp1_rep	mRNA	10333794	10334375	.	+	.	ID=Os01t0287400-01;Name=Os01t0287400-01;Locus_id=Os01g0287400;Note=Similar to Hydrophobic protein LTI6A (Low temperature-induced protein 6A).;Transcript_evidence=AK058343 (DDBJ%2C Best hit);ORF_evidence=Q01L12 (UniProt);NIAS_FLcDNA=001-014-D10;Expression=AK058343;TENOR=Os01t0287400-01;KEGG=Os01t0287400-01
Chr01	irgsp1_rep	five_prime_UTR	10333794	10334052	.	+	.	Parent=Os01t0287400-01
Chr01	irgsp1_rep	CDS	10334053	10334250	.	+	0	Parent=Os01t0287400-01
Chr01	irgsp1_rep	three_prime_UTR	10334251	10334375	.	+	.	Parent=Os01t0287400-01
Chr01	irgsp1_rep	mRNA	10342026	10343570	.	-	.	ID=Os01t0287600-01;Name=Os01t0287600-01;Locus_id=Os01g0287600;CGSNL Gene Symbol=CHT10;CGSNL Gene Name=CHITINASE 10;Oryzabase Gene Symbol Synonym(s)=Cht10;Oryzabase Gene Name Synonym(s)=Chitinase10%2C Chitinase 10%2C Pathogenesis related (PR)-3 chitinase 10%2C Pathogenesis related-3 chitinase 10%2C PR-3 chitinase 10;Note=Similar to Chitinase 10.;Transcript_evidence=AK063062 (DDBJ%2C Best hit);ORF_evidence=Q5NB11 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: chitin catabolic process (GO:0006032),Biological Process: cell wall macromolecule catabolic process (GO:0016998),Molecular Function: chitinase activity (GO:0004568);InterPro=Glycoside hydrolase%2C family 19%2C catalytic (IPR000726),Glycoside hydrolase%2C family 19 (IPR016283),Lysozyme-like domain (IPR023346);NIAS_FLcDNA=001-110-F11;Oryzabase=8124;TENOR=Os01t0287600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	10343540	10343570	.	-	.	Parent=Os01t0287600-01
Chr01	irgsp1_rep	CDS	10343034	10343539	.	-	0	Parent=Os01t0287600-01
Chr01	irgsp1_rep	CDS	10342177	10342543	.	-	1	Parent=Os01t0287600-01
Chr01	irgsp1_rep	three_prime_UTR	10342026	10342176	.	-	.	Parent=Os01t0287600-01
Chr01	irgsp1_rep	mRNA	10346287	10349999	.	-	.	ID=Os01t0287700-01;Name=Os01t0287700-01;Locus_id=Os01g0287700;Note=Hypothetical conserved gene.;Transcript_evidence=AK240653 (DDBJ%2C Best hit);ORF_evidence=B9EVL5 (UniProt);NIAS_FLcDNA=J023098H13;TENOR=Os01t0287700-01;KEGG=Os01t0287700-01
Chr01	irgsp1_rep	five_prime_UTR	10349873	10349999	.	-	.	Parent=Os01t0287700-01
Chr01	irgsp1_rep	CDS	10349565	10349872	.	-	0	Parent=Os01t0287700-01
Chr01	irgsp1_rep	CDS	10348935	10348965	.	-	1	Parent=Os01t0287700-01
Chr01	irgsp1_rep	three_prime_UTR	10348825	10348934	.	-	.	Parent=Os01t0287700-01
Chr01	irgsp1_rep	three_prime_UTR	10348455	10348614	.	-	.	Parent=Os01t0287700-01
Chr01	irgsp1_rep	three_prime_UTR	10347398	10347488	.	-	.	Parent=Os01t0287700-01
Chr01	irgsp1_rep	three_prime_UTR	10346287	10347089	.	-	.	Parent=Os01t0287700-01
Chr01	irgsp1_rep	mRNA	10366413	10366924	.	-	.	ID=Os01t0287900-00;Name=Os01t0287900-00;Locus_id=Os01g0287900;Note=Hypothetical protein.;Transcript_evidence=AK372761 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0287900-00
Chr01	irgsp1_rep	five_prime_UTR	10366924	10366924	.	-	.	Parent=Os01t0287900-00
Chr01	irgsp1_rep	CDS	10366413	10366923	.	-	0	Parent=Os01t0287900-00
Chr01	irgsp1_rep	mRNA	10369936	10370578	.	-	.	ID=Os01t0288200-01;Name=Os01t0288200-01;Locus_id=Os01g0288200;Note=Conserved hypothetical protein.;Transcript_evidence=AK063135 (DDBJ%2C Best hit);ORF_evidence=A2WNN9 (UniProt);NIAS_FLcDNA=001-111-G01;Expression=AK063135;TENOR=Os01t0288200-01;KEGG=Os01t0288200-01
Chr01	irgsp1_rep	five_prime_UTR	10370404	10370578	.	-	.	Parent=Os01t0288200-01
Chr01	irgsp1_rep	CDS	10370301	10370403	.	-	0	Parent=Os01t0288200-01
Chr01	irgsp1_rep	CDS	10370062	10370201	.	-	2	Parent=Os01t0288200-01
Chr01	irgsp1_rep	three_prime_UTR	10369936	10370061	.	-	.	Parent=Os01t0288200-01
Chr01	irgsp1_rep	mRNA	10398599	10399256	.	+	.	ID=Os01t0288700-01;Name=Os01t0288700-01;Locus_id=Os01g0288700;Note=Hypothetical gene.;Transcript_evidence=AK106473 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-104-B03;Expression=AK106473;TENOR=Os01t0288700-01;KEGG=Os01t0288700-01
Chr01	irgsp1_rep	five_prime_UTR	10398599	10398599	.	+	.	Parent=Os01t0288700-01
Chr01	irgsp1_rep	CDS	10398600	10398836	.	+	0	Parent=Os01t0288700-01
Chr01	irgsp1_rep	three_prime_UTR	10398837	10399256	.	+	.	Parent=Os01t0288700-01
Chr01	irgsp1_rep	mRNA	10399289	10400347	.	-	.	ID=Os01t0288800-01;Name=Os01t0288800-01;Locus_id=Os01g0288800;Note=Conserved hypothetical protein.;Transcript_evidence=AK108858 (DDBJ%2C Best hit);ORF_evidence=B8A6R3 (UniProt);NIAS_FLcDNA=002-152-B05;Expression=AK108858;TENOR=Os01t0288800-01;KEGG=Os01t0288800-01
Chr01	irgsp1_rep	five_prime_UTR	10400236	10400347	.	-	.	Parent=Os01t0288800-01
Chr01	irgsp1_rep	CDS	10399945	10400235	.	-	0	Parent=Os01t0288800-01
Chr01	irgsp1_rep	three_prime_UTR	10399289	10399944	.	-	.	Parent=Os01t0288800-01
Chr01	irgsp1_rep	mRNA	10432248	10432766	.	-	.	ID=Os01t0289100-00;Name=Os01t0289100-00;Locus_id=Os01g0289100;Note=Conserved hypothetical protein.;Transcript_evidence=AK362999 (DDBJ);ORF_evidence=Q5NB04 (UniProt);TENOR=Os01t0289100-00
Chr01	irgsp1_rep	five_prime_UTR	10432724	10432766	.	-	.	Parent=Os01t0289100-00
Chr01	irgsp1_rep	CDS	10432427	10432723	.	-	0	Parent=Os01t0289100-00
Chr01	irgsp1_rep	three_prime_UTR	10432248	10432426	.	-	.	Parent=Os01t0289100-00
Chr01	irgsp1_rep	mRNA	10471169	10478800	.	+	.	ID=Os01t0289600-00;Name=Os01t0289600-00;Locus_id=Os01g0289600;CGSNL Gene Symbol=WRKY9;CGSNL Gene Name=WRKY GENE 9;Oryzabase Gene Symbol Synonym(s)=OsWRKY9;Oryzabase Gene Name Synonym(s)=Rice WRKY gene9;Note=Similar to WRKY transcription factor 28.;Transcript_evidence=BT054472 (DDBJ);ORF_evidence=C9DI17 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6598;TENOR=Os01t0289600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	10471169	10471195	.	+	.	Parent=Os01t0289600-00
Chr01	irgsp1_rep	CDS	10471196	10471296	.	+	0	Parent=Os01t0289600-00
Chr01	irgsp1_rep	CDS	10472744	10472988	.	+	1	Parent=Os01t0289600-00
Chr01	irgsp1_rep	CDS	10473373	10473506	.	+	2	Parent=Os01t0289600-00
Chr01	irgsp1_rep	CDS	10478045	10478800	.	+	0	Parent=Os01t0289600-00
Chr01	irgsp1_rep	mRNA	10477926	10478798	.	-	.	ID=Os01t0289732-01;Name=Os01t0289732-01;Locus_id=Os01g0289732;Note=Similar to WRKY transcription factor 6-like (WRKY transcription factor 9).;Transcript_evidence=AK243275 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100050A06;TENOR=Os01t0289732-01;KEGG=Os01t0289732-01
Chr01	irgsp1_rep	five_prime_UTR	10478621	10478798	.	-	.	Parent=Os01t0289732-01
Chr01	irgsp1_rep	CDS	10478018	10478620	.	-	0	Parent=Os01t0289732-01
Chr01	irgsp1_rep	three_prime_UTR	10477926	10478017	.	-	.	Parent=Os01t0289732-01
Chr01	irgsp1_rep	mRNA	10487870	10488107	.	-	.	ID=Os01t0289750-00;Name=Os01t0289750-00;Locus_id=Os01g0289750;Note=Non-protein coding transcript.;Transcript_evidence=CU405820 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os01t0289750-00
Chr01	irgsp1_rep	exon	10487870	10488107	.	-	.	Parent=Os01t0289750-00
Chr01	irgsp1_rep	mRNA	10488943	10490994	.	-	.	ID=Os01t0289900-00;Name=Os01t0289900-00;Locus_id=Os01g0289900;Note=Transferase domain containing protein.;Transcript_evidence=AK373078 (DDBJ);ORF_evidence=A2WNP7 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os01t0289900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	10490243	10490994	.	-	0	Parent=Os01t0289900-00
Chr01	irgsp1_rep	CDS	10488948	10489584	.	-	1	Parent=Os01t0289900-00
Chr01	irgsp1_rep	three_prime_UTR	10488943	10488947	.	-	.	Parent=Os01t0289900-00
Chr01	irgsp1_rep	mRNA	10489015	10491186	.	+	.	ID=Os01t0289950-01;Name=Os01t0289950-01;Locus_id=Os01g0289950;Note=Conserved hypothetical protein.;Transcript_evidence=AK241293 (DDBJ%2C Best hit);ORF_evidence=NP_001172286.1 (RefSeq);NIAS_FLcDNA=J065138G04;TENOR=Os01t0289950-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	10489015	10489709	.	+	.	Parent=Os01t0289950-01
Chr01	irgsp1_rep	CDS	10489710	10490249	.	+	0	Parent=Os01t0289950-01
Chr01	irgsp1_rep	three_prime_UTR	10490250	10491186	.	+	.	Parent=Os01t0289950-01
Chr01	irgsp1_rep	mRNA	10492039	10495682	.	-	.	ID=Os01t0290000-01;Name=Os01t0290000-01;Locus_id=Os01g0290000;Note=Similar to Cyprosin precursor (EC 3.4.23.-) (Fragment).;Transcript_evidence=AK066523 (DDBJ%2C Best hit);ORF_evidence=NP_001152501.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Biological Process: lipid metabolic process (GO:0006629),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Saposin-like type B%2C 1 (IPR007856),Saposin-like type B%2C 2 (IPR008138),Saposin B (IPR008139),Peptidase aspartic%2C catalytic (IPR009007),Saposin-like (IPR011001),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J013071P15;Expression=AK066523;TENOR=Os01t0290000-01;KEGG=Os01t0290000-01 (EC:3.4.23.40)
Chr01	irgsp1_rep	five_prime_UTR	10495533	10495682	.	-	.	Parent=Os01t0290000-01
Chr01	irgsp1_rep	five_prime_UTR	10495028	10495041	.	-	.	Parent=Os01t0290000-01
Chr01	irgsp1_rep	CDS	10494698	10495027	.	-	0	Parent=Os01t0290000-01
Chr01	irgsp1_rep	CDS	10494526	10494586	.	-	0	Parent=Os01t0290000-01
Chr01	irgsp1_rep	CDS	10494329	10494423	.	-	2	Parent=Os01t0290000-01
Chr01	irgsp1_rep	CDS	10494139	10494251	.	-	0	Parent=Os01t0290000-01
Chr01	irgsp1_rep	CDS	10493770	10494043	.	-	1	Parent=Os01t0290000-01
Chr01	irgsp1_rep	CDS	10493452	10493565	.	-	0	Parent=Os01t0290000-01
Chr01	irgsp1_rep	CDS	10493279	10493343	.	-	0	Parent=Os01t0290000-01
Chr01	irgsp1_rep	CDS	10493031	10493172	.	-	1	Parent=Os01t0290000-01
Chr01	irgsp1_rep	CDS	10492824	10492943	.	-	0	Parent=Os01t0290000-01
Chr01	irgsp1_rep	CDS	10492646	10492734	.	-	0	Parent=Os01t0290000-01
Chr01	irgsp1_rep	CDS	10492446	10492530	.	-	1	Parent=Os01t0290000-01
Chr01	irgsp1_rep	three_prime_UTR	10492039	10492445	.	-	.	Parent=Os01t0290000-01
Chr01	irgsp1_rep	mRNA	10492192	10495628	.	-	.	ID=Os01t0290000-02;Name=Os01t0290000-02;Locus_id=Os01g0290000;Note=Similar to Cyprosin precursor (EC 3.4.23.-) (Fragment).;Transcript_evidence=AK100420 (DDBJ%2C Best hit);ORF_evidence=NP_001152501.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Biological Process: lipid metabolic process (GO:0006629),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Saposin-like type B%2C 1 (IPR007856),Saposin-like type B%2C 2 (IPR008138),Saposin B (IPR008139),Peptidase aspartic%2C catalytic (IPR009007),Saposin-like (IPR011001),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J023088B02;Expression=AK100420;TENOR=Os01t0290000-02;KEGG=Os01t0290000-02 (EC:3.4.23.40)
Chr01	irgsp1_rep	five_prime_UTR	10495533	10495628	.	-	.	Parent=Os01t0290000-02
Chr01	irgsp1_rep	five_prime_UTR	10495028	10495041	.	-	.	Parent=Os01t0290000-02
Chr01	irgsp1_rep	CDS	10494698	10495027	.	-	0	Parent=Os01t0290000-02
Chr01	irgsp1_rep	CDS	10494526	10494586	.	-	0	Parent=Os01t0290000-02
Chr01	irgsp1_rep	CDS	10494329	10494423	.	-	2	Parent=Os01t0290000-02
Chr01	irgsp1_rep	CDS	10494139	10494251	.	-	0	Parent=Os01t0290000-02
Chr01	irgsp1_rep	CDS	10493770	10494043	.	-	1	Parent=Os01t0290000-02
Chr01	irgsp1_rep	CDS	10493452	10493565	.	-	0	Parent=Os01t0290000-02
Chr01	irgsp1_rep	CDS	10493279	10493343	.	-	0	Parent=Os01t0290000-02
Chr01	irgsp1_rep	CDS	10493031	10493172	.	-	1	Parent=Os01t0290000-02
Chr01	irgsp1_rep	CDS	10492824	10492943	.	-	0	Parent=Os01t0290000-02
Chr01	irgsp1_rep	CDS	10492646	10492734	.	-	0	Parent=Os01t0290000-02
Chr01	irgsp1_rep	CDS	10492446	10492530	.	-	1	Parent=Os01t0290000-02
Chr01	irgsp1_rep	three_prime_UTR	10492192	10492445	.	-	.	Parent=Os01t0290000-02
Chr01	irgsp1_rep	mRNA	10492240	10495601	.	-	.	ID=Os01t0290000-03;Name=Os01t0290000-03;Locus_id=Os01g0290000;Note=Similar to Cyprosin precursor (EC 3.4.23.-) (Fragment).;Transcript_evidence=AK072264 (DDBJ%2C Best hit);ORF_evidence=NP_001152501.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Biological Process: lipid metabolic process (GO:0006629),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Saposin-like type B%2C 1 (IPR007856),Saposin-like type B%2C 2 (IPR008138),Saposin B (IPR008139),Peptidase aspartic%2C catalytic (IPR009007),Saposin-like (IPR011001),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J023005B17;Expression=AK072264;TENOR=Os01t0290000-03;KEGG=Os01t0290000-03 (EC:3.4.23.40)
Chr01	irgsp1_rep	five_prime_UTR	10495533	10495601	.	-	.	Parent=Os01t0290000-03
Chr01	irgsp1_rep	five_prime_UTR	10495028	10495041	.	-	.	Parent=Os01t0290000-03
Chr01	irgsp1_rep	CDS	10494698	10495027	.	-	0	Parent=Os01t0290000-03
Chr01	irgsp1_rep	CDS	10494526	10494586	.	-	0	Parent=Os01t0290000-03
Chr01	irgsp1_rep	CDS	10494329	10494423	.	-	2	Parent=Os01t0290000-03
Chr01	irgsp1_rep	CDS	10494139	10494251	.	-	0	Parent=Os01t0290000-03
Chr01	irgsp1_rep	CDS	10493770	10494043	.	-	1	Parent=Os01t0290000-03
Chr01	irgsp1_rep	CDS	10493452	10493565	.	-	0	Parent=Os01t0290000-03
Chr01	irgsp1_rep	CDS	10493279	10493343	.	-	0	Parent=Os01t0290000-03
Chr01	irgsp1_rep	CDS	10493031	10493172	.	-	1	Parent=Os01t0290000-03
Chr01	irgsp1_rep	CDS	10492824	10492943	.	-	0	Parent=Os01t0290000-03
Chr01	irgsp1_rep	CDS	10492646	10492734	.	-	0	Parent=Os01t0290000-03
Chr01	irgsp1_rep	CDS	10492446	10492530	.	-	1	Parent=Os01t0290000-03
Chr01	irgsp1_rep	three_prime_UTR	10492240	10492445	.	-	.	Parent=Os01t0290000-03
Chr01	irgsp1_rep	mRNA	10492062	10493925	.	-	.	ID=Os01t0290000-04;Name=Os01t0290000-04;Locus_id=Os01g0290000;Note=Similar to retrotransposon protein SINE subclass.;Transcript_evidence=AK104371 (DDBJ%2C Best hit);ORF_evidence=NP_001152501.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Biological Process: lipid metabolic process (GO:0006629),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Saposin-like type B%2C 1 (IPR007856),Saposin-like type B%2C 2 (IPR008138),Saposin B (IPR008139),Peptidase aspartic%2C catalytic (IPR009007),Saposin-like (IPR011001),Peptidase aspartic (IPR021109);NIAS_FLcDNA=001-035-E08;Expression=AK104371;TENOR=Os01t0290000-04;KEGG=Os01t0290000-04 (EC:3.4.23.40)
Chr01	irgsp1_rep	CDS	10493770	10493925	.	-	0	Parent=Os01t0290000-04
Chr01	irgsp1_rep	CDS	10493452	10493565	.	-	0	Parent=Os01t0290000-04
Chr01	irgsp1_rep	CDS	10493279	10493343	.	-	0	Parent=Os01t0290000-04
Chr01	irgsp1_rep	CDS	10493031	10493172	.	-	1	Parent=Os01t0290000-04
Chr01	irgsp1_rep	CDS	10492824	10492943	.	-	0	Parent=Os01t0290000-04
Chr01	irgsp1_rep	CDS	10492646	10492734	.	-	0	Parent=Os01t0290000-04
Chr01	irgsp1_rep	CDS	10492446	10492530	.	-	1	Parent=Os01t0290000-04
Chr01	irgsp1_rep	three_prime_UTR	10492062	10492445	.	-	.	Parent=Os01t0290000-04
Chr01	irgsp1_rep	mRNA	10496869	10500943	.	-	.	ID=Os01t0290100-01;Name=Os01t0290100-01;Locus_id=Os01g0290100;Note=Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 domain containing protein.;Transcript_evidence=AK069735 (DDBJ%2C Best hit);ORF_evidence=NP_001151142.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferase%2C class V/Cysteine desulfurase (IPR000192),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J023030G13;Expression=AK069735;TENOR=Os01t0290100-01;KEGG=Os01t0290100-01
Chr01	irgsp1_rep	five_prime_UTR	10500633	10500943	.	-	.	Parent=Os01t0290100-01
Chr01	irgsp1_rep	CDS	10499202	10500632	.	-	0	Parent=Os01t0290100-01
Chr01	irgsp1_rep	CDS	10497159	10497176	.	-	0	Parent=Os01t0290100-01
Chr01	irgsp1_rep	three_prime_UTR	10496869	10497158	.	-	.	Parent=Os01t0290100-01
Chr01	irgsp1_rep	mRNA	10509008	10510496	.	+	.	ID=Os01t0290600-00;Name=Os01t0290600-00;Locus_id=Os01g0290600;Oryzabase Gene Name Synonym(s)=isopenicillin N epimerase homolog;Note=Similar to isopenicillin N epimerase.;Transcript_evidence=AK366122 (DDBJ);ORF_evidence=NP_001151142.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferase%2C class V/Cysteine desulfurase (IPR000192),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);Oryzabase=16025;TENOR=Os01t0290600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	10509008	10509065	.	+	.	Parent=Os01t0290600-00
Chr01	irgsp1_rep	CDS	10509066	10510496	.	+	0	Parent=Os01t0290600-00
Chr01	irgsp1_rep	mRNA	10514370	10516248	.	+	.	ID=Os01t0290650-00;Name=Os01t0290650-00;Locus_id=Os01g0290650;Note=Non-protein coding transcript.;Transcript_evidence=CT830638 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os01t0290650-00
Chr01	irgsp1_rep	exon	10514370	10515227	.	+	.	Parent=Os01t0290650-00
Chr01	irgsp1_rep	exon	10515388	10515460	.	+	.	Parent=Os01t0290650-00
Chr01	irgsp1_rep	exon	10515695	10515789	.	+	.	Parent=Os01t0290650-00
Chr01	irgsp1_rep	exon	10515863	10516248	.	+	.	Parent=Os01t0290650-00
Chr01	irgsp1_rep	mRNA	10515442	10516270	.	-	.	ID=Os01t0290700-01;Name=Os01t0290700-01;Locus_id=Os01g0290700;CGSNL Gene Symbol=MDR4;CGSNL Gene Name=MULTIDRUG RESISTANCE 4;Oryzabase Gene Symbol Synonym(s)=OsABCB1%2C ABCB1%2C OsPGP1%2C OsMDR4;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCB subgroup member 1%2C P-Glycoprotein 1%2C multidrug resistance 4;Note=Similar to CjMDR1.;Transcript_evidence=AK058263 (DDBJ%2C Best hit);ORF_evidence=Q8GU69 (UniProt);GO=Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887);InterPro=ABC transporter-like (IPR003439);NIAS_FLcDNA=001-012-H08;Oryzabase=11921;Expression=AK058263;TENOR=Os01t0290700-01;KEGG=Os01t0290700-01
Chr01	irgsp1_rep	five_prime_UTR	10516269	10516270	.	-	.	Parent=Os01t0290700-01
Chr01	irgsp1_rep	CDS	10516176	10516268	.	-	0	Parent=Os01t0290700-01
Chr01	irgsp1_rep	CDS	10515723	10516076	.	-	0	Parent=Os01t0290700-01
Chr01	irgsp1_rep	three_prime_UTR	10515442	10515722	.	-	.	Parent=Os01t0290700-01
Chr01	irgsp1_rep	mRNA	10516472	10518597	.	+	.	ID=Os01t0290800-01;Name=Os01t0290800-01;Locus_id=Os01g0290800;Oryzabase Gene Name Synonym(s)=ABC transporter B family member;Note=Hypothetical protein.;Transcript_evidence=AK119474 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-134-B04;Oryzabase=22534;Expression=AK119474;TENOR=Os01t0290800-01;KEGG=Os01t0290800-01
Chr01	irgsp1_rep	five_prime_UTR	10516472	10516478	.	+	.	Parent=Os01t0290800-01
Chr01	irgsp1_rep	CDS	10516479	10516739	.	+	0	Parent=Os01t0290800-01
Chr01	irgsp1_rep	three_prime_UTR	10516740	10518597	.	+	.	Parent=Os01t0290800-01
Chr01	irgsp1_rep	mRNA	10536286	10536571	.	-	.	ID=Os01t0290901-00;Name=Os01t0290901-00;Locus_id=Os01g0290901;Note=Non-protein coding transcript.;Transcript_evidence=CT834872 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os01t0290901-00
Chr01	irgsp1_rep	exon	10536286	10536571	.	-	.	Parent=Os01t0290901-00
Chr01	irgsp1_rep	mRNA	10561340	10565325	.	-	.	ID=Os01t0291500-01;Name=Os01t0291500-01;Locus_id=Os01g0291500;Oryzabase Gene Symbol Synonym(s)=OsAT4%2C OsAt4%2C AT4%2C PMT%2C OsPMT%2C OsAT4/PMT%2C OsAT4/PMT1%2C OsAT4/OsPMT1%2C OsPMT1;Oryzabase Gene Name Synonym(s)=acyltransferase 4%2C p-coumarate monolignol transferase%2C p-coumaroyl-CoA monolignol transferase 1;Note=Transferase family protein.;Transcript_evidence=AK070443 (DDBJ%2C Best hit);ORF_evidence=B6TZX2 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J023054D03;Oryzabase=11736;Expression=AK070443;TENOR=Os01t0291500-01;KEGG=Os01t0291500-01
Chr01	irgsp1_rep	five_prime_UTR	10565220	10565325	.	-	.	Parent=Os01t0291500-01
Chr01	irgsp1_rep	CDS	10564773	10565219	.	-	0	Parent=Os01t0291500-01
Chr01	irgsp1_rep	CDS	10561561	10562433	.	-	0	Parent=Os01t0291500-01
Chr01	irgsp1_rep	three_prime_UTR	10561340	10561560	.	-	.	Parent=Os01t0291500-01
Chr01	irgsp1_rep	mRNA	10561330	10565221	.	-	.	ID=Os01t0291500-02;Name=Os01t0291500-02;Locus_id=Os01g0291500;Oryzabase Gene Symbol Synonym(s)=OsAT4%2C OsAt4%2C AT4%2C PMT%2C OsPMT%2C OsAT4/PMT%2C OsAT4/PMT1%2C OsAT4/OsPMT1%2C OsPMT1;Oryzabase Gene Name Synonym(s)=acyltransferase 4%2C p-coumarate monolignol transferase%2C p-coumaroyl-CoA monolignol transferase 1;Note=Transferase family protein.;Transcript_evidence=AK060689 (DDBJ%2C Best hit);ORF_evidence=B6TZX2 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=001-030-A09;Oryzabase=11736;TENOR=Os01t0291500-02
Chr01	irgsp1_rep	five_prime_UTR	10565220	10565221	.	-	.	Parent=Os01t0291500-02
Chr01	irgsp1_rep	CDS	10564773	10565219	.	-	0	Parent=Os01t0291500-02
Chr01	irgsp1_rep	CDS	10561561	10562433	.	-	0	Parent=Os01t0291500-02
Chr01	irgsp1_rep	three_prime_UTR	10561330	10561560	.	-	.	Parent=Os01t0291500-02
Chr01	irgsp1_rep	mRNA	10561594	10565100	.	+	.	ID=Os01t0291733-00;Name=Os01t0291733-00;Locus_id=Os01g0291733;Note=Hypothetical protein.;Transcript_evidence=AK360634 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0291733-00
Chr01	irgsp1_rep	CDS	10561594	10562367	.	+	0	Parent=Os01t0291733-00
Chr01	irgsp1_rep	three_prime_UTR	10562368	10562431	.	+	.	Parent=Os01t0291733-00
Chr01	irgsp1_rep	three_prime_UTR	10564771	10565100	.	+	.	Parent=Os01t0291733-00
Chr01	irgsp1_rep	mRNA	10622951	10627532	.	+	.	ID=Os01t0292200-01;Name=Os01t0292200-01;Locus_id=Os01g0292200;CGSNL Gene Symbol=CIPK01;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 1;Oryzabase Gene Symbol Synonym(s)=OsCIPK01%2C CIPK1%2C OsCIPK1;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 1;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK065588 (DDBJ%2C Best hit);ORF_evidence=Q9LGV5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),NAF domain (IPR004041),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),NAF/FISL domain (IPR018451),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013034G14;Oryzabase=7388;Expression=AK065588;TENOR=Os01t0292200-01;KEGG=Os01t0292200-01 (EC:2.7.11.11)
Chr01	irgsp1_rep	five_prime_UTR	10622951	10623157	.	+	.	Parent=Os01t0292200-01
Chr01	irgsp1_rep	CDS	10623158	10623346	.	+	0	Parent=Os01t0292200-01
Chr01	irgsp1_rep	CDS	10623436	10623498	.	+	0	Parent=Os01t0292200-01
Chr01	irgsp1_rep	CDS	10625087	10625158	.	+	0	Parent=Os01t0292200-01
Chr01	irgsp1_rep	CDS	10625259	10625366	.	+	0	Parent=Os01t0292200-01
Chr01	irgsp1_rep	CDS	10625539	10625619	.	+	0	Parent=Os01t0292200-01
Chr01	irgsp1_rep	CDS	10625704	10625757	.	+	0	Parent=Os01t0292200-01
Chr01	irgsp1_rep	CDS	10625845	10625970	.	+	0	Parent=Os01t0292200-01
Chr01	irgsp1_rep	CDS	10626063	10626269	.	+	0	Parent=Os01t0292200-01
Chr01	irgsp1_rep	CDS	10626381	10626482	.	+	0	Parent=Os01t0292200-01
Chr01	irgsp1_rep	CDS	10626635	10626751	.	+	0	Parent=Os01t0292200-01
Chr01	irgsp1_rep	CDS	10626854	10626925	.	+	0	Parent=Os01t0292200-01
Chr01	irgsp1_rep	CDS	10627020	10627094	.	+	0	Parent=Os01t0292200-01
Chr01	irgsp1_rep	CDS	10627221	10627340	.	+	0	Parent=Os01t0292200-01
Chr01	irgsp1_rep	three_prime_UTR	10627341	10627532	.	+	.	Parent=Os01t0292200-01
Chr01	irgsp1_rep	mRNA	10625861	10627489	.	+	.	ID=Os01t0292200-02;Name=Os01t0292200-02;Locus_id=Os01g0292200;CGSNL Gene Symbol=CIPK01;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 1;Oryzabase Gene Symbol Synonym(s)=OsCIPK01%2C CIPK1%2C OsCIPK1;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 1;Note=Similar to CBL-interacting protein kinase 1.;Transcript_evidence=AK068440 (DDBJ%2C Best hit);ORF_evidence=B3GLZ5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Kinase-associated KA1 (IPR001772),NAF domain (IPR004041),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),NAF/FISL domain (IPR018451);NIAS_FLcDNA=J013155G19;Oryzabase=7388;Expression=AK068440;TENOR=Os01t0292200-02;KEGG=Os01t0292200-02
Chr01	irgsp1_rep	five_prime_UTR	10625861	10625862	.	+	.	Parent=Os01t0292200-02
Chr01	irgsp1_rep	CDS	10625863	10625970	.	+	0	Parent=Os01t0292200-02
Chr01	irgsp1_rep	CDS	10626063	10626269	.	+	0	Parent=Os01t0292200-02
Chr01	irgsp1_rep	CDS	10626381	10626482	.	+	0	Parent=Os01t0292200-02
Chr01	irgsp1_rep	CDS	10626635	10626751	.	+	0	Parent=Os01t0292200-02
Chr01	irgsp1_rep	CDS	10626854	10626925	.	+	0	Parent=Os01t0292200-02
Chr01	irgsp1_rep	CDS	10627020	10627094	.	+	0	Parent=Os01t0292200-02
Chr01	irgsp1_rep	CDS	10627221	10627340	.	+	0	Parent=Os01t0292200-02
Chr01	irgsp1_rep	three_prime_UTR	10627341	10627489	.	+	.	Parent=Os01t0292200-02
Chr01	irgsp1_rep	mRNA	10627018	10627489	.	+	.	ID=Os01t0292200-03;Name=Os01t0292200-03;Locus_id=Os01g0292200;CGSNL Gene Symbol=CIPK01;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 1;Oryzabase Gene Symbol Synonym(s)=OsCIPK01%2C CIPK1%2C OsCIPK1;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 1;Note=Similar to CBL-interacting protein kinase 1.;Transcript_evidence=AK061640 (DDBJ%2C Best hit);ORF_evidence=B3GLZ5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524);InterPro=Kinase-associated KA1 (IPR001772);NIAS_FLcDNA=001-036-B02;Oryzabase=7388;Expression=AK061640;TENOR=Os01t0292200-03;KEGG=Os01t0292200-03
Chr01	irgsp1_rep	five_prime_UTR	10627018	10627019	.	+	.	Parent=Os01t0292200-03
Chr01	irgsp1_rep	CDS	10627020	10627094	.	+	0	Parent=Os01t0292200-03
Chr01	irgsp1_rep	CDS	10627221	10627340	.	+	0	Parent=Os01t0292200-03
Chr01	irgsp1_rep	three_prime_UTR	10627341	10627489	.	+	.	Parent=Os01t0292200-03
Chr01	irgsp1_rep	mRNA	10623102	10626765	.	-	.	ID=Os01t0292250-00;Name=Os01t0292250-00;Locus_id=Os01g0292250;Note=Non-protein coding transcript.;Transcript_evidence=tplb0035p08 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os01t0292250-00
Chr01	irgsp1_rep	exon	10626522	10626765	.	-	.	Parent=Os01t0292250-00
Chr01	irgsp1_rep	exon	10626080	10626247	.	-	.	Parent=Os01t0292250-00
Chr01	irgsp1_rep	exon	10625857	10625991	.	-	.	Parent=Os01t0292250-00
Chr01	irgsp1_rep	exon	10625698	10625771	.	-	.	Parent=Os01t0292250-00
Chr01	irgsp1_rep	exon	10625531	10625613	.	-	.	Parent=Os01t0292250-00
Chr01	irgsp1_rep	exon	10625275	10625360	.	-	.	Parent=Os01t0292250-00
Chr01	irgsp1_rep	exon	10625104	10625173	.	-	.	Parent=Os01t0292250-00
Chr01	irgsp1_rep	exon	10623432	10623515	.	-	.	Parent=Os01t0292250-00
Chr01	irgsp1_rep	exon	10623102	10623342	.	-	.	Parent=Os01t0292250-00
Chr01	irgsp1_rep	mRNA	10643287	10644848	.	+	.	ID=Os01t0292700-01;Name=Os01t0292700-01;Locus_id=Os01g0292700;RAP-DB Gene Symbol Synonym(s)=OsIF%2C OsIFL;RAP-DB Gene Name Synonym(s)=Oryza sativa intermediate filament%2C intermediate filament like protein;CGSNL Gene Symbol=IF;CGSNL Gene Name=INTERMEDIATE FILAMENT;Oryzabase Gene Symbol Synonym(s)=OsIFL%2C IFL%2C OsIF;Oryzabase Gene Name Synonym(s)=intermediate filament like protein%2C intermediate filament;Note=Intermediate filament%2C Cytoskeleton protein%2C Tolerance to salinity and heat stress;Transcript_evidence=Inferred from literature;ORF_evidence=Q5JNS1;Manual Curation=March 12%2C 2018;Literature_PMID=29511223,27708383;Oryzabase=21441;TENOR=Os01t0292700-00;Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737)
Chr01	irgsp1_rep	CDS	10643287	10643487	.	+	0	Parent=Os01t0292700-01
Chr01	irgsp1_rep	CDS	10643564	10643674	.	+	0	Parent=Os01t0292700-01
Chr01	irgsp1_rep	CDS	10643817	10644047	.	+	0	Parent=Os01t0292700-01
Chr01	irgsp1_rep	CDS	10644177	10644281	.	+	0	Parent=Os01t0292700-01
Chr01	irgsp1_rep	CDS	10644470	10644628	.	+	0	Parent=Os01t0292700-01
Chr01	irgsp1_rep	three_prime_UTR	10644629	10644848	.	+	.	Parent=Os01t0292700-01
Chr01	irgsp1_rep	mRNA	10650597	10656659	.	+	.	ID=Os01t0292900-01;Name=Os01t0292900-01;Locus_id=Os01g0292900;CGSNL Gene Symbol=SPL1;CGSNL Gene Name=RICE SQUAMOSA PROMOTER-BINDING-LIKE 1;Oryzabase Gene Symbol Synonym(s)=OsSPL1%2C DLN8%2C OsDLN8%2C DLN8a%2C DLN8b%2C OsDLN8a%2C OsDLN8b;Oryzabase Gene Name Synonym(s)=Squamosa promoter-binding-like protein 1%2C DLN repressor 8%2C DLN motif protein 8;Note=Similar to Squamosa-promoter binding-like protein 2.;Transcript_evidence=AK072849 (DDBJ%2C Best hit);ORF_evidence=Q9LGU7 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Transcription factor%2C SBP-box (IPR004333),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J023142C13;Oryzabase=6887;Expression=AK072849;TENOR=Os01t0292900-01;KEGG=Os01t0292900-01
Chr01	irgsp1_rep	five_prime_UTR	10650597	10650640	.	+	.	Parent=Os01t0292900-01
Chr01	irgsp1_rep	five_prime_UTR	10651095	10651198	.	+	.	Parent=Os01t0292900-01
Chr01	irgsp1_rep	CDS	10651199	10651656	.	+	0	Parent=Os01t0292900-01
Chr01	irgsp1_rep	CDS	10652959	10653140	.	+	1	Parent=Os01t0292900-01
Chr01	irgsp1_rep	CDS	10653242	10653454	.	+	2	Parent=Os01t0292900-01
Chr01	irgsp1_rep	CDS	10653545	10653612	.	+	2	Parent=Os01t0292900-01
Chr01	irgsp1_rep	CDS	10653696	10653770	.	+	0	Parent=Os01t0292900-01
Chr01	irgsp1_rep	CDS	10653885	10653992	.	+	0	Parent=Os01t0292900-01
Chr01	irgsp1_rep	CDS	10654337	10654454	.	+	0	Parent=Os01t0292900-01
Chr01	irgsp1_rep	CDS	10654576	10654717	.	+	2	Parent=Os01t0292900-01
Chr01	irgsp1_rep	CDS	10654791	10654932	.	+	1	Parent=Os01t0292900-01
Chr01	irgsp1_rep	CDS	10655008	10655625	.	+	0	Parent=Os01t0292900-01
Chr01	irgsp1_rep	CDS	10655988	10656452	.	+	0	Parent=Os01t0292900-01
Chr01	irgsp1_rep	three_prime_UTR	10656453	10656659	.	+	.	Parent=Os01t0292900-01
Chr01	irgsp1_rep	mRNA	10650742	10656755	.	+	.	ID=Os01t0292900-02;Name=Os01t0292900-02;Locus_id=Os01g0292900;CGSNL Gene Symbol=SPL1;CGSNL Gene Name=RICE SQUAMOSA PROMOTER-BINDING-LIKE 1;Oryzabase Gene Symbol Synonym(s)=OsSPL1%2C DLN8%2C OsDLN8%2C DLN8a%2C DLN8b%2C OsDLN8a%2C OsDLN8b;Oryzabase Gene Name Synonym(s)=Squamosa promoter-binding-like protein 1%2C DLN repressor 8%2C DLN motif protein 8;Note=Similar to Squamosa-promoter binding-like protein 2.;Transcript_evidence=AK068471 (DDBJ%2C Best hit);ORF_evidence=Q9LGU7 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Transcription factor%2C SBP-box (IPR004333),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J013155F18;Oryzabase=6887;Expression=AK068471;TENOR=Os01t0292900-02;KEGG=Os01t0292900-02
Chr01	irgsp1_rep	five_prime_UTR	10650742	10650905	.	+	.	Parent=Os01t0292900-02
Chr01	irgsp1_rep	five_prime_UTR	10651010	10651198	.	+	.	Parent=Os01t0292900-02
Chr01	irgsp1_rep	CDS	10651199	10651656	.	+	0	Parent=Os01t0292900-02
Chr01	irgsp1_rep	CDS	10652959	10653140	.	+	1	Parent=Os01t0292900-02
Chr01	irgsp1_rep	CDS	10653242	10653454	.	+	2	Parent=Os01t0292900-02
Chr01	irgsp1_rep	CDS	10653545	10653612	.	+	2	Parent=Os01t0292900-02
Chr01	irgsp1_rep	CDS	10653696	10653770	.	+	0	Parent=Os01t0292900-02
Chr01	irgsp1_rep	CDS	10653885	10653992	.	+	0	Parent=Os01t0292900-02
Chr01	irgsp1_rep	CDS	10654337	10654454	.	+	0	Parent=Os01t0292900-02
Chr01	irgsp1_rep	CDS	10654576	10654717	.	+	2	Parent=Os01t0292900-02
Chr01	irgsp1_rep	CDS	10654791	10654932	.	+	1	Parent=Os01t0292900-02
Chr01	irgsp1_rep	CDS	10655008	10655625	.	+	0	Parent=Os01t0292900-02
Chr01	irgsp1_rep	CDS	10655988	10656452	.	+	0	Parent=Os01t0292900-02
Chr01	irgsp1_rep	three_prime_UTR	10656453	10656755	.	+	.	Parent=Os01t0292900-02
Chr01	irgsp1_rep	mRNA	10657543	10660137	.	-	.	ID=Os01t0293000-01;Name=Os01t0293000-01;Locus_id=Os01g0293000;RAP-DB Gene Symbol Synonym(s)=OsSAMS3;RAP-DB Gene Name Synonym(s)=S-Adenosyl-l-methionine synthetase 3;Oryzabase Gene Symbol Synonym(s)=OsSAMS3%2C OsSAMS1%2C SAMS3%2C SAMS1%2C SAM2;Oryzabase Gene Name Synonym(s)=S-Adenosyl-l-methionine synthetase 3;Note=S-adenosyl-l-methionine synthetase%2C Histone H3K4me3 and DNA methylation%2C Regulation of gene expression related to flowering;Transcript_evidence=AK241882;ORF_evidence=Q9LGU6;GO=Biological Process: S-adenosylmethionine biosynthetic process (GO:0006556),Molecular Function: methionine adenosyltransferase activity (GO:0004478),Molecular Function: ATP binding (GO:0005524);InterPro=S-adenosylmethionine synthetase superfamily (IPR022636),S-adenosylmethionine synthetase (IPR002133),S-adenosylmethionine synthetase%2C N-terminal (IPR022628),S-adenosylmethionine synthetase%2C central domain (IPR022629),S-adenosylmethionine synthetase%2C C-terminal (IPR022630),S-adenosylmethionine synthetase%2C conserved site (IPR022631);NIAS_FLcDNA=J065218P10;Manual Curation=January 18%2C 2018;Literature_PMID=21757254;Oryzabase=11402;TENOR=Os01t0293000-01;KEGG=Os01t0293000-01 (EC:2.5.1.6)
Chr01	irgsp1_rep	five_prime_UTR	10660019	10660137	.	-	.	Parent=Os01t0293000-01
Chr01	irgsp1_rep	five_prime_UTR	10658982	10658991	.	-	.	Parent=Os01t0293000-01
Chr01	irgsp1_rep	CDS	10657791	10658981	.	-	0	Parent=Os01t0293000-01
Chr01	irgsp1_rep	three_prime_UTR	10657543	10657790	.	-	.	Parent=Os01t0293000-01
Chr01	irgsp1_rep	mRNA	10664792	10666903	.	-	.	ID=Os01t0293100-01;Name=Os01t0293100-01;Locus_id=Os01g0293100;RAP-DB Gene Symbol Synonym(s)=OsbHLH142%2C bHLH142%2C TIP2;RAP-DB Gene Name Synonym(s)=TDR INTERACTING PROTEIN2%2C basic helix-loop-helix protein 142;Oryzabase Gene Symbol Synonym(s)=OsbHLH142%2C bHLH142%2C TIP2%2C OsTIP2;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 142%2C TDR INTERACTING PROTEIN2%2C TDR Interacting Protein 2;Note=bHLH transcription factor%2C Control of anther cell differentiation%2C Pollen development;Transcript_evidence=AK106850;ORF_evidence=Q5JNS0;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);NIAS_FLcDNA=002-118-A11;Manual Curation=June 6%2C 2014;Literature_PMID=24755456,24894043;Oryzabase=15418;TENOR=Os01t0293100-01;KEGG=Os01t0293100-01
Chr01	irgsp1_rep	five_prime_UTR	10666701	10666903	.	-	.	Parent=Os01t0293100-01
Chr01	irgsp1_rep	five_prime_UTR	10666471	10666489	.	-	.	Parent=Os01t0293100-01
Chr01	irgsp1_rep	CDS	10665856	10666470	.	-	0	Parent=Os01t0293100-01
Chr01	irgsp1_rep	CDS	10665304	10665756	.	-	0	Parent=Os01t0293100-01
Chr01	irgsp1_rep	CDS	10665047	10665118	.	-	0	Parent=Os01t0293100-01
Chr01	irgsp1_rep	three_prime_UTR	10664792	10665046	.	-	.	Parent=Os01t0293100-01
Chr01	irgsp1_rep	mRNA	10675167	10679826	.	+	.	ID=Os01t0293200-01;Name=Os01t0293200-01;Locus_id=Os01g0293200;Note=Similar to predicted protein.;Transcript_evidence=AK289047 (DDBJ%2C Best hit);ORF_evidence=NP_191868.1 (RefSeq);InterPro=Plant organelle RNA recognition domain (IPR021099);NIAS_FLcDNA=J090092M08;TENOR=Os01t0293200-01;KEGG=Os01t0293200-01
Chr01	irgsp1_rep	five_prime_UTR	10675167	10675187	.	+	.	Parent=Os01t0293200-01
Chr01	irgsp1_rep	CDS	10675188	10676438	.	+	0	Parent=Os01t0293200-01
Chr01	irgsp1_rep	three_prime_UTR	10676439	10676500	.	+	.	Parent=Os01t0293200-01
Chr01	irgsp1_rep	three_prime_UTR	10676726	10679826	.	+	.	Parent=Os01t0293200-01
Chr01	irgsp1_rep	mRNA	10691672	10692073	.	+	.	ID=Os01t0293501-00;Name=Os01t0293501-00;Locus_id=Os01g0293501;Note=Hypothetical protein.;Transcript_evidence=BT084813 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0293501-00
Chr01	irgsp1_rep	five_prime_UTR	10691672	10691672	.	+	.	Parent=Os01t0293501-00
Chr01	irgsp1_rep	CDS	10691673	10692073	.	+	0	Parent=Os01t0293501-00
Chr01	irgsp1_rep	mRNA	10696304	10701348	.	+	.	ID=Os01t0293800-00;Name=Os01t0293800-00;Locus_id=Os01g0293800;Note=Hypothetical protein.;Transcript_evidence=FP093257 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0293800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	10696304	10696304	.	+	.	Parent=Os01t0293800-00
Chr01	irgsp1_rep	CDS	10696305	10696486	.	+	0	Parent=Os01t0293800-00
Chr01	irgsp1_rep	CDS	10701020	10701284	.	+	1	Parent=Os01t0293800-00
Chr01	irgsp1_rep	three_prime_UTR	10701285	10701348	.	+	.	Parent=Os01t0293800-00
Chr01	irgsp1_rep	mRNA	10701626	10703130	.	-	.	ID=Os01t0293900-00;Name=Os01t0293900-00;Locus_id=Os01g0293900;Oryzabase Gene Symbol Synonym(s)=prx8;Oryzabase Gene Name Synonym(s)=class III peroxidase 8;Note=Similar to peroxidase 1.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001152255.1 (RefSeq);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidase%2C active site (IPR019794);Oryzabase=14537;TENOR=Os01t0293900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	10702921	10703130	.	-	0	Parent=Os01t0293900-00
Chr01	irgsp1_rep	CDS	10701626	10701973	.	-	0	Parent=Os01t0293900-00
Chr01	irgsp1_rep	mRNA	10720396	10721623	.	-	.	ID=Os01t0294500-00;Name=Os01t0294500-00;Locus_id=Os01g0294500;Note=Similar to Class III peroxidase 9.;Transcript_evidence=FP094155 (DDBJ);ORF_evidence=Q5U1T3 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);TENOR=Os01t0294500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	10721393	10721623	.	-	0	Parent=Os01t0294500-00
Chr01	irgsp1_rep	CDS	10720419	10721225	.	-	0	Parent=Os01t0294500-00
Chr01	irgsp1_rep	three_prime_UTR	10720396	10720418	.	-	.	Parent=Os01t0294500-00
Chr01	irgsp1_rep	mRNA	10748692	10750233	.	-	.	ID=Os01t0294700-01;Name=Os01t0294700-01;Locus_id=Os01g0294700;Oryzabase Gene Symbol Synonym(s)=OsPOD%2C prx11%2C Osprx11;Oryzabase Gene Name Synonym(s)=peroxidase%2C class III peroxidase 11;Note=Haem peroxidase%2C plant/fungal/bacterial family protein.;Transcript_evidence=AK104388 (DDBJ%2C Best hit),AK068755 (DDBJ%2C Best hit),AK104781 (DDBJ%2C Best hit);ORF_evidence=NP_001152255.1 (RefSeq);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=006-201-G02,J013159G18,001-039-C08;Oryzabase=13449;Expression=AK104388;TENOR=Os01t0294700-01;KEGG=Os01t0294700-01
Chr01	irgsp1_rep	five_prime_UTR	10750147	10750233	.	-	.	Parent=Os01t0294700-01
Chr01	irgsp1_rep	CDS	10749919	10750146	.	-	0	Parent=Os01t0294700-01
Chr01	irgsp1_rep	CDS	10748892	10749707	.	-	0	Parent=Os01t0294700-01
Chr01	irgsp1_rep	three_prime_UTR	10748692	10748891	.	-	.	Parent=Os01t0294700-01
Chr01	irgsp1_rep	mRNA	10802151	10804527	.	-	.	ID=Os01t0295600-01;Name=Os01t0295600-01;Locus_id=Os01g0295600;Note=Hypothetical conserved gene.;Transcript_evidence=AK240751 (DDBJ%2C Best hit);ORF_evidence=B9EVP1 (UniProt);NIAS_FLcDNA=J043040G21;TENOR=Os01t0295600-01;KEGG=Os01t0295600-01
Chr01	irgsp1_rep	five_prime_UTR	10804365	10804527	.	-	.	Parent=Os01t0295600-01
Chr01	irgsp1_rep	CDS	10803888	10804364	.	-	0	Parent=Os01t0295600-01
Chr01	irgsp1_rep	CDS	10803524	10803715	.	-	0	Parent=Os01t0295600-01
Chr01	irgsp1_rep	CDS	10803189	10803278	.	-	0	Parent=Os01t0295600-01
Chr01	irgsp1_rep	CDS	10802947	10803012	.	-	0	Parent=Os01t0295600-01
Chr01	irgsp1_rep	CDS	10802766	10802861	.	-	0	Parent=Os01t0295600-01
Chr01	irgsp1_rep	three_prime_UTR	10802463	10802765	.	-	.	Parent=Os01t0295600-01
Chr01	irgsp1_rep	three_prime_UTR	10802151	10802367	.	-	.	Parent=Os01t0295600-01
Chr01	irgsp1_rep	mRNA	10805527	10808077	.	-	.	ID=Os01t0295700-01;Name=Os01t0295700-01;Locus_id=Os01g0295700;Oryzabase Gene Symbol Synonym(s)=OsPP2C02%2C PP2C02%2C OsPP2C2%2C PP2C2%2C OsPP2;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C02%2C protein phosphatase 2C 02%2C protein phosphatase 2C2%2C protein phosphatase 2C 2%2C protein phosphatase 2;Note=Similar to Protein phosphatase-2C.;Transcript_evidence=AK070333 (DDBJ%2C Best hit);ORF_evidence=NP_001152937.1 (RefSeq);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J023049D10;Oryzabase=17881;Expression=AK070333;TENOR=Os01t0295700-01;KEGG=Os01t0295700-01
Chr01	irgsp1_rep	five_prime_UTR	10807792	10808077	.	-	.	Parent=Os01t0295700-01
Chr01	irgsp1_rep	CDS	10807633	10807791	.	-	0	Parent=Os01t0295700-01
Chr01	irgsp1_rep	CDS	10806732	10806902	.	-	0	Parent=Os01t0295700-01
Chr01	irgsp1_rep	CDS	10806411	10806646	.	-	0	Parent=Os01t0295700-01
Chr01	irgsp1_rep	CDS	10805739	10806315	.	-	1	Parent=Os01t0295700-01
Chr01	irgsp1_rep	three_prime_UTR	10805527	10805738	.	-	.	Parent=Os01t0295700-01
Chr01	irgsp1_rep	mRNA	10814139	10818530	.	-	.	ID=Os01t0295900-01;Name=Os01t0295900-01;Locus_id=Os01g0295900;Note=Similar to cDNA clone:J023064I01%2C full insert sequence.;Transcript_evidence=AK242011 (DDBJ%2C Best hit);ORF_evidence=B6SU43 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: metalloendopeptidase activity (GO:0004222);InterPro=Peptidase M22%2C glycoprotease (IPR000905),Peptidase M22%2C glycoprotease%2C subgroup (IPR017861);NIAS_FLcDNA=J075106H20;TENOR=Os01t0295900-01;KEGG=Os01t0295900-01 (EC:3.4.24.57)
Chr01	irgsp1_rep	five_prime_UTR	10818530	10818530	.	-	.	Parent=Os01t0295900-01
Chr01	irgsp1_rep	CDS	10818293	10818529	.	-	0	Parent=Os01t0295900-01
Chr01	irgsp1_rep	CDS	10818121	10818165	.	-	0	Parent=Os01t0295900-01
Chr01	irgsp1_rep	CDS	10817932	10818006	.	-	0	Parent=Os01t0295900-01
Chr01	irgsp1_rep	CDS	10817732	10817828	.	-	0	Parent=Os01t0295900-01
Chr01	irgsp1_rep	CDS	10817222	10817312	.	-	2	Parent=Os01t0295900-01
Chr01	irgsp1_rep	CDS	10816833	10816881	.	-	1	Parent=Os01t0295900-01
Chr01	irgsp1_rep	three_prime_UTR	10816796	10816832	.	-	.	Parent=Os01t0295900-01
Chr01	irgsp1_rep	three_prime_UTR	10816151	10816229	.	-	.	Parent=Os01t0295900-01
Chr01	irgsp1_rep	three_prime_UTR	10815993	10816076	.	-	.	Parent=Os01t0295900-01
Chr01	irgsp1_rep	three_prime_UTR	10815789	10815903	.	-	.	Parent=Os01t0295900-01
Chr01	irgsp1_rep	three_prime_UTR	10815400	10815488	.	-	.	Parent=Os01t0295900-01
Chr01	irgsp1_rep	three_prime_UTR	10814139	10814391	.	-	.	Parent=Os01t0295900-01
Chr01	irgsp1_rep	mRNA	10819457	10822413	.	-	.	ID=Os01t0296000-01;Name=Os01t0296000-01;Locus_id=Os01g0296000;CGSNL Gene Symbol=RLCK30;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 30;Oryzabase Gene Symbol Synonym(s)=OsRLCK30;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 30;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK102480 (DDBJ%2C Best hit);ORF_evidence=NP_849538.2 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Tyrosine-protein kinase%2C active site (IPR008266),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033094K08;Oryzabase=18749;Expression=AK102480;TENOR=Os01t0296000-01;KEGG=Os01t0296000-01
Chr01	irgsp1_rep	five_prime_UTR	10822203	10822413	.	-	.	Parent=Os01t0296000-01
Chr01	irgsp1_rep	five_prime_UTR	10820738	10820817	.	-	.	Parent=Os01t0296000-01
Chr01	irgsp1_rep	CDS	10820152	10820737	.	-	0	Parent=Os01t0296000-01
Chr01	irgsp1_rep	CDS	10819599	10819948	.	-	2	Parent=Os01t0296000-01
Chr01	irgsp1_rep	three_prime_UTR	10819457	10819598	.	-	.	Parent=Os01t0296000-01
Chr01	irgsp1_rep	mRNA	10822587	10827149	.	+	.	ID=Os01t0296100-01;Name=Os01t0296100-01;Locus_id=Os01g0296100;Oryzabase Gene Symbol Synonym(s)=OsSK12/OsGSK3%2C OsSK12%2C OsGSK3%2C SK12%2C GSK3;Oryzabase Gene Name Synonym(s)=GSK3/SHAGGY-Like Kinase 12%2C GSK3-like Kinase 3;Note=Similar to Shaggy-related protein kinase alpha (EC 2.7.1.-) (ASK-alpha).;Transcript_evidence=AK099599 (DDBJ%2C Best hit),AK120194 (DDBJ%2C Best hit);ORF_evidence=Q1AMT7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013046L20,J013036B06;Oryzabase=22634;TENOR=Os01t0296100-01
Chr01	irgsp1_rep	five_prime_UTR	10822587	10822914	.	+	.	Parent=Os01t0296100-01
Chr01	irgsp1_rep	five_prime_UTR	10824100	10824177	.	+	.	Parent=Os01t0296100-01
Chr01	irgsp1_rep	CDS	10824178	10824288	.	+	0	Parent=Os01t0296100-01
Chr01	irgsp1_rep	CDS	10824376	10824468	.	+	0	Parent=Os01t0296100-01
Chr01	irgsp1_rep	CDS	10824646	10824705	.	+	0	Parent=Os01t0296100-01
Chr01	irgsp1_rep	CDS	10824779	10825051	.	+	0	Parent=Os01t0296100-01
Chr01	irgsp1_rep	CDS	10825153	10825227	.	+	0	Parent=Os01t0296100-01
Chr01	irgsp1_rep	CDS	10825343	10825399	.	+	0	Parent=Os01t0296100-01
Chr01	irgsp1_rep	CDS	10825517	10825657	.	+	0	Parent=Os01t0296100-01
Chr01	irgsp1_rep	CDS	10825737	10825787	.	+	0	Parent=Os01t0296100-01
Chr01	irgsp1_rep	CDS	10825880	10825975	.	+	0	Parent=Os01t0296100-01
Chr01	irgsp1_rep	CDS	10826083	10826166	.	+	0	Parent=Os01t0296100-01
Chr01	irgsp1_rep	CDS	10826254	10826356	.	+	0	Parent=Os01t0296100-01
Chr01	irgsp1_rep	CDS	10826442	10826524	.	+	2	Parent=Os01t0296100-01
Chr01	irgsp1_rep	three_prime_UTR	10826525	10827149	.	+	.	Parent=Os01t0296100-01
Chr01	irgsp1_rep	mRNA	10822587	10827093	.	+	.	ID=Os01t0296100-02;Name=Os01t0296100-02;Locus_id=Os01g0296100;Oryzabase Gene Symbol Synonym(s)=OsSK12/OsGSK3%2C OsSK12%2C OsGSK3%2C SK12%2C GSK3;Oryzabase Gene Name Synonym(s)=GSK3/SHAGGY-Like Kinase 12%2C GSK3-like Kinase 3;Note=Similar to Glycogen synthase kinase.;Transcript_evidence=AK102400 (DDBJ%2C Best hit);ORF_evidence=Q1AMT7 (UniProt);NIAS_FLcDNA=J033092J01;Oryzabase=22634;Expression=AK102400;TENOR=Os01t0296100-02;KEGG=Os01t0296100-02 (EC:2.7.11.26)
Chr01	irgsp1_rep	five_prime_UTR	10822587	10822914	.	+	.	Parent=Os01t0296100-02
Chr01	irgsp1_rep	five_prime_UTR	10824100	10824177	.	+	.	Parent=Os01t0296100-02
Chr01	irgsp1_rep	CDS	10824178	10824288	.	+	0	Parent=Os01t0296100-02
Chr01	irgsp1_rep	CDS	10824376	10824468	.	+	0	Parent=Os01t0296100-02
Chr01	irgsp1_rep	CDS	10824646	10824750	.	+	0	Parent=Os01t0296100-02
Chr01	irgsp1_rep	three_prime_UTR	10824751	10825051	.	+	.	Parent=Os01t0296100-02
Chr01	irgsp1_rep	three_prime_UTR	10825153	10825227	.	+	.	Parent=Os01t0296100-02
Chr01	irgsp1_rep	three_prime_UTR	10825343	10825399	.	+	.	Parent=Os01t0296100-02
Chr01	irgsp1_rep	three_prime_UTR	10825517	10825657	.	+	.	Parent=Os01t0296100-02
Chr01	irgsp1_rep	three_prime_UTR	10825737	10825787	.	+	.	Parent=Os01t0296100-02
Chr01	irgsp1_rep	three_prime_UTR	10825880	10825975	.	+	.	Parent=Os01t0296100-02
Chr01	irgsp1_rep	three_prime_UTR	10826083	10826166	.	+	.	Parent=Os01t0296100-02
Chr01	irgsp1_rep	three_prime_UTR	10826254	10826356	.	+	.	Parent=Os01t0296100-02
Chr01	irgsp1_rep	three_prime_UTR	10826442	10827093	.	+	.	Parent=Os01t0296100-02
Chr01	irgsp1_rep	mRNA	10822596	10827151	.	+	.	ID=Os01t0296100-03;Name=Os01t0296100-03;Locus_id=Os01g0296100;Oryzabase Gene Symbol Synonym(s)=OsSK12/OsGSK3%2C OsSK12%2C OsGSK3%2C SK12%2C GSK3;Oryzabase Gene Name Synonym(s)=GSK3/SHAGGY-Like Kinase 12%2C GSK3-like Kinase 3;Note=Similar to Glycogen synthase kinase.;Transcript_evidence=AK063982 (DDBJ%2C Best hit);ORF_evidence=Q1AMT7 (UniProt);NIAS_FLcDNA=001-124-D05;Oryzabase=22634;Expression=AK063982;TENOR=Os01t0296100-03;KEGG=Os01t0296100-03 (EC:2.7.11.26)
Chr01	irgsp1_rep	five_prime_UTR	10822596	10822914	.	+	.	Parent=Os01t0296100-03
Chr01	irgsp1_rep	five_prime_UTR	10824100	10824177	.	+	.	Parent=Os01t0296100-03
Chr01	irgsp1_rep	CDS	10824178	10824288	.	+	0	Parent=Os01t0296100-03
Chr01	irgsp1_rep	CDS	10824376	10824468	.	+	0	Parent=Os01t0296100-03
Chr01	irgsp1_rep	CDS	10824646	10824750	.	+	0	Parent=Os01t0296100-03
Chr01	irgsp1_rep	three_prime_UTR	10824751	10825051	.	+	.	Parent=Os01t0296100-03
Chr01	irgsp1_rep	three_prime_UTR	10825153	10825227	.	+	.	Parent=Os01t0296100-03
Chr01	irgsp1_rep	three_prime_UTR	10825343	10825399	.	+	.	Parent=Os01t0296100-03
Chr01	irgsp1_rep	three_prime_UTR	10825517	10825657	.	+	.	Parent=Os01t0296100-03
Chr01	irgsp1_rep	three_prime_UTR	10825737	10825787	.	+	.	Parent=Os01t0296100-03
Chr01	irgsp1_rep	three_prime_UTR	10825880	10825975	.	+	.	Parent=Os01t0296100-03
Chr01	irgsp1_rep	three_prime_UTR	10826117	10826166	.	+	.	Parent=Os01t0296100-03
Chr01	irgsp1_rep	three_prime_UTR	10826254	10826356	.	+	.	Parent=Os01t0296100-03
Chr01	irgsp1_rep	three_prime_UTR	10826442	10827151	.	+	.	Parent=Os01t0296100-03
Chr01	irgsp1_rep	mRNA	10824769	10826165	.	-	.	ID=Os01t0296133-00;Name=Os01t0296133-00;Locus_id=Os01g0296133;Note=Non-protein coding transcript.;Transcript_evidence=tplb0034j24 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os01t0296133-00
Chr01	irgsp1_rep	exon	10826086	10826165	.	-	.	Parent=Os01t0296133-00
Chr01	irgsp1_rep	exon	10825884	10825977	.	-	.	Parent=Os01t0296133-00
Chr01	irgsp1_rep	exon	10825710	10825794	.	-	.	Parent=Os01t0296133-00
Chr01	irgsp1_rep	exon	10825501	10825633	.	-	.	Parent=Os01t0296133-00
Chr01	irgsp1_rep	exon	10825174	10825259	.	-	.	Parent=Os01t0296133-00
Chr01	irgsp1_rep	exon	10824769	10825067	.	-	.	Parent=Os01t0296133-00
Chr01	irgsp1_rep	mRNA	10830074	10832018	.	-	.	ID=Os01t0296166-00;Name=Os01t0296166-00;Locus_id=Os01g0296166;Note=Hypothetical protein.;Transcript_evidence=tplb0028j17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0296166-00
Chr01	irgsp1_rep	five_prime_UTR	10831817	10832018	.	-	.	Parent=Os01t0296166-00
Chr01	irgsp1_rep	five_prime_UTR	10831439	10831753	.	-	.	Parent=Os01t0296166-00
Chr01	irgsp1_rep	CDS	10830953	10831438	.	-	0	Parent=Os01t0296166-00
Chr01	irgsp1_rep	three_prime_UTR	10830949	10830952	.	-	.	Parent=Os01t0296166-00
Chr01	irgsp1_rep	three_prime_UTR	10830074	10830742	.	-	.	Parent=Os01t0296166-00
Chr01	irgsp1_rep	mRNA	10830045	10831911	.	+	.	ID=Os01t0296200-01;Name=Os01t0296200-01;Locus_id=Os01g0296200;RAP-DB Gene Symbol Synonym(s)=PSL1;RAP-DB Gene Name Synonym(s)=PHOTO-SENSITIVE LEAF ROLLING 1;Oryzabase Gene Symbol Synonym(s)=OsPGL13%2C PGL13;Oryzabase Gene Name Synonym(s)=Polygalacturonases-Like 13%2C PG-like 13;Note=Polygalacturonase%2C Pectin degrading enzyme%2C Modification of cell wall biosynthesis%2C Drought tolerance;Transcript_evidence=Inferred from literature;ORF_evidence=Q0JNF9;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Pectin lyase fold (IPR012334),Pectin lyase fold/virulence factor (IPR011050),Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626);Manual Curation=August 31%2C 2020;Literature_PMID=32858770;Oryzabase=22290;TENOR=Os01t0296166-00;Subcellular location=cell wall (GO:0005618)
Chr01	irgsp1_rep	CDS	10830045	10830728	.	+	0	Parent=Os01t0296200-01
Chr01	irgsp1_rep	CDS	10830836	10830871	.	+	0	Parent=Os01t0296200-01
Chr01	irgsp1_rep	CDS	10830966	10831757	.	+	0	Parent=Os01t0296200-01
Chr01	irgsp1_rep	three_prime_UTR	10831758	10831911	.	+	.	Parent=Os01t0296200-01
Chr01	irgsp1_rep	mRNA	10871540	10873947	.	-	.	ID=Os01t0296450-00;Name=Os01t0296450-00;Locus_id=Os01g0296450;Note=Hypothetical protein.;Transcript_evidence=tplb0024e11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0296450-00
Chr01	irgsp1_rep	CDS	10873371	10873947	.	-	0	Parent=Os01t0296450-00
Chr01	irgsp1_rep	CDS	10871540	10873295	.	-	2	Parent=Os01t0296450-00
Chr01	irgsp1_rep	mRNA	10872358	10874262	.	+	.	ID=Os01t0296700-01;Name=Os01t0296700-01;Locus_id=Os01g0296700;Note=Glycoside hydrolase%2C family 3%2C N-terminal domain containing protein.;Transcript_evidence=AK105791 (DDBJ%2C Best hit);ORF_evidence=Q94IY5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 3%2C N-terminal (IPR001764),Glycoside hydrolase%2C family 3%2C C-terminal (IPR002772),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-202-H06;Expression=AK105791;TENOR=Os01t0296700-01;KEGG=Os01t0296700-01
Chr01	irgsp1_rep	CDS	10872358	10873297	.	+	0	Parent=Os01t0296700-01
Chr01	irgsp1_rep	CDS	10873373	10874001	.	+	2	Parent=Os01t0296700-01
Chr01	irgsp1_rep	three_prime_UTR	10874002	10874262	.	+	.	Parent=Os01t0296700-01
Chr01	irgsp1_rep	mRNA	10877446	10878567	.	+	.	ID=Os01t0296900-01;Name=Os01t0296900-01;Locus_id=Os01g0296900;Note=Hypothetical conserved gene.;Transcript_evidence=AK288418 (DDBJ%2C Best hit);ORF_evidence=NP_172409.1 (RefSeq);NIAS_FLcDNA=J090031L18;TENOR=Os01t0296900-01;KEGG=Os01t0296900-01
Chr01	irgsp1_rep	five_prime_UTR	10877446	10877634	.	+	.	Parent=Os01t0296900-01
Chr01	irgsp1_rep	CDS	10877635	10877841	.	+	0	Parent=Os01t0296900-01
Chr01	irgsp1_rep	three_prime_UTR	10877842	10878567	.	+	.	Parent=Os01t0296900-01
Chr01	irgsp1_rep	mRNA	10891810	10893684	.	+	.	ID=Os01t0297200-01;Name=Os01t0297200-01;Locus_id=Os01g0297200;CGSNL Gene Name=AAA-ATPASE 1;Oryzabase Gene Name Synonym(s)=OsAAA-ATPase1%2C OsAAA-ATPase 1%2C AAA-ATPase1;Note=ATPase%2C AAA-type%2C core domain containing protein.;Transcript_evidence=AK109883 (DDBJ%2C Best hit);ORF_evidence=NP_001148126.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);NIAS_FLcDNA=002-149-D07;Oryzabase=23146;Expression=AK109883;TENOR=Os01t0297200-01;KEGG=Os01t0297200-01
Chr01	irgsp1_rep	five_prime_UTR	10891810	10891885	.	+	.	Parent=Os01t0297200-01
Chr01	irgsp1_rep	CDS	10891886	10892529	.	+	0	Parent=Os01t0297200-01
Chr01	irgsp1_rep	CDS	10892604	10893543	.	+	1	Parent=Os01t0297200-01
Chr01	irgsp1_rep	three_prime_UTR	10893544	10893684	.	+	.	Parent=Os01t0297200-01
Chr01	irgsp1_rep	mRNA	10911297	10914638	.	+	.	ID=Os01t0297700-01;Name=Os01t0297700-01;Locus_id=Os01g0297700;CGSNL Gene Symbol=UMAMIT5;CGSNL Gene Name=USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 5;Oryzabase Gene Symbol Synonym(s)=OsUMAMIT5;Oryzabase Gene Name Synonym(s)=Usually Multiple Acids Move In and out Transporter 5;Note=Protein of unknown function DUF6%2C transmembrane domain containing protein.;Transcript_evidence=AK106554 (DDBJ%2C Best hit);ORF_evidence=NP_172409.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=002-108-G11;Oryzabase=21374;Expression=AK106554;TENOR=Os01t0297700-01;KEGG=Os01t0297700-01
Chr01	irgsp1_rep	five_prime_UTR	10911297	10911493	.	+	.	Parent=Os01t0297700-01
Chr01	irgsp1_rep	CDS	10911494	10911669	.	+	0	Parent=Os01t0297700-01
Chr01	irgsp1_rep	CDS	10912594	10912656	.	+	1	Parent=Os01t0297700-01
Chr01	irgsp1_rep	CDS	10913413	10913944	.	+	1	Parent=Os01t0297700-01
Chr01	irgsp1_rep	CDS	10914036	10914401	.	+	0	Parent=Os01t0297700-01
Chr01	irgsp1_rep	three_prime_UTR	10914402	10914638	.	+	.	Parent=Os01t0297700-01
Chr01	irgsp1_rep	mRNA	10911475	10914251	.	-	.	ID=Os01t0297950-00;Name=Os01t0297950-00;Locus_id=Os01g0297950;Note=Hypothetical protein.;Transcript_evidence=tplb0040p04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0297950-00
Chr01	irgsp1_rep	five_prime_UTR	10914004	10914251	.	-	.	Parent=Os01t0297950-00
Chr01	irgsp1_rep	five_prime_UTR	10913920	10913923	.	-	.	Parent=Os01t0297950-00
Chr01	irgsp1_rep	CDS	10913620	10913919	.	-	0	Parent=Os01t0297950-00
Chr01	irgsp1_rep	three_prime_UTR	10913405	10913619	.	-	.	Parent=Os01t0297950-00
Chr01	irgsp1_rep	three_prime_UTR	10911475	10911724	.	-	.	Parent=Os01t0297950-00
Chr01	irgsp1_rep	mRNA	10932480	10933544	.	-	.	ID=Os01t0298301-01;Name=Os01t0298301-01;Locus_id=Os01g0298301;Note=Hypothetical conserved gene.;Transcript_evidence=AK287684 (DDBJ%2C Best hit);ORF_evidence=B8A6N8 (UniProt);NIAS_FLcDNA=J065124I17;TENOR=Os01t0298301-01;KEGG=Os01t0298301-01
Chr01	irgsp1_rep	five_prime_UTR	10933543	10933544	.	-	.	Parent=Os01t0298301-01
Chr01	irgsp1_rep	CDS	10933231	10933542	.	-	0	Parent=Os01t0298301-01
Chr01	irgsp1_rep	CDS	10932689	10933129	.	-	0	Parent=Os01t0298301-01
Chr01	irgsp1_rep	three_prime_UTR	10932480	10932688	.	-	.	Parent=Os01t0298301-01
Chr01	irgsp1_rep	mRNA	10934895	10935992	.	+	.	ID=Os01t0298400-01;Name=Os01t0298400-01;Locus_id=Os01g0298400;Oryzabase Gene Symbol Synonym(s)=OsMYB;Oryzabase Gene Name Synonym(s)=MYB family transcription factor;Note=Myb transcription factor domain containing protein.;Transcript_evidence=AK241615 (DDBJ%2C Best hit);ORF_evidence=D8L9I2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J065186D02;Oryzabase=23469;TENOR=Os01t0298400-01;KEGG=Os01t0298400-01
Chr01	irgsp1_rep	five_prime_UTR	10934895	10934987	.	+	.	Parent=Os01t0298400-01
Chr01	irgsp1_rep	CDS	10934988	10935869	.	+	0	Parent=Os01t0298400-01
Chr01	irgsp1_rep	three_prime_UTR	10935870	10935992	.	+	.	Parent=Os01t0298400-01
Chr01	irgsp1_rep	mRNA	10942552	10945642	.	-	.	ID=Os01t0298500-00;Name=Os01t0298500-00;Locus_id=Os01g0298500;Note=Conserved hypothetical protein.;Transcript_evidence=EU971745 (DDBJ);ORF_evidence=NP_001174045.1 (RefSeq);TENOR=Os01t0298500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	10945244	10945642	.	-	0	Parent=Os01t0298500-00
Chr01	irgsp1_rep	CDS	10942660	10942788	.	-	0	Parent=Os01t0298500-00
Chr01	irgsp1_rep	three_prime_UTR	10942552	10942659	.	-	.	Parent=Os01t0298500-00
Chr01	irgsp1_rep	mRNA	10960528	10961310	.	-	.	ID=Os01t0299100-00;Name=Os01t0299100-00;Locus_id=Os01g0299100;Note=Conserved hypothetical protein.;Transcript_evidence=FP096734 (DDBJ);ORF_evidence=Q5JNP9 (UniProt);TENOR=Os01t0299100-00
Chr01	irgsp1_rep	five_prime_UTR	10961238	10961310	.	-	.	Parent=Os01t0299100-00
Chr01	irgsp1_rep	CDS	10961210	10961237	.	-	0	Parent=Os01t0299100-00
Chr01	irgsp1_rep	CDS	10961015	10961133	.	-	2	Parent=Os01t0299100-00
Chr01	irgsp1_rep	three_prime_UTR	10960528	10961014	.	-	.	Parent=Os01t0299100-00
Chr01	irgsp1_rep	mRNA	10965000	10965587	.	+	.	ID=Os01t0299150-00;Name=Os01t0299150-00;Locus_id=Os01g0299150;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=EU940798 (DDBJ);ORF_evidence=Q5JNP8 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);TENOR=Os01t0299150-00
Chr01	irgsp1_rep	CDS	10965000	10965587	.	+	0	Parent=Os01t0299150-00
Chr01	irgsp1_rep	mRNA	10965767	10966999	.	+	.	ID=Os01t0299200-00;Name=Os01t0299200-00;Locus_id=Os01g0299200;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=BT084276 (DDBJ);ORF_evidence=Q5JNP8 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);TENOR=Os01t0299200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	10965767	10966999	.	+	0	Parent=Os01t0299200-00
Chr01	irgsp1_rep	mRNA	10969328	10973346	.	-	.	ID=Os01t0299300-00;Name=Os01t0299300-00;Locus_id=Os01g0299300;Oryzabase Gene Symbol Synonym(s)=GPAT;Oryzabase Gene Name Synonym(s)=glycerol-3-phosphate acyltransferase;Note=Hypothetical conserved gene.;Transcript_evidence=AK250870 (DDBJ);ORF_evidence=NP_001042812.2 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Phospholipid/glycerol acyltransferase (IPR002123);Oryzabase=21975;TENOR=Os01t0299300-00;KEGG=Os01t0299300-00
Chr01	irgsp1_rep	CDS	10972405	10973346	.	-	0	Parent=Os01t0299300-00
Chr01	irgsp1_rep	CDS	10969331	10970215	.	-	0	Parent=Os01t0299300-00
Chr01	irgsp1_rep	three_prime_UTR	10969328	10969330	.	-	.	Parent=Os01t0299300-00
Chr01	irgsp1_rep	mRNA	10977198	10979778	.	+	.	ID=Os01t0299400-01;Name=Os01t0299400-01;Locus_id=Os01g0299400;Note=Sterile alpha motif homology domain containing protein.;Transcript_evidence=AK107814 (DDBJ%2C Best hit);ORF_evidence=Q9M9L5 (UniProt);InterPro=IGR protein motif (IPR019083);NIAS_FLcDNA=002-133-F06;Expression=AK107814;TENOR=Os01t0299400-01;KEGG=Os01t0299400-01
Chr01	irgsp1_rep	five_prime_UTR	10977198	10977229	.	+	.	Parent=Os01t0299400-01
Chr01	irgsp1_rep	CDS	10977230	10977311	.	+	0	Parent=Os01t0299400-01
Chr01	irgsp1_rep	CDS	10977394	10977545	.	+	2	Parent=Os01t0299400-01
Chr01	irgsp1_rep	CDS	10979518	10979598	.	+	0	Parent=Os01t0299400-01
Chr01	irgsp1_rep	three_prime_UTR	10979599	10979778	.	+	.	Parent=Os01t0299400-01
Chr01	irgsp1_rep	mRNA	10980741	10983339	.	-	.	ID=Os01t0299500-01;Name=Os01t0299500-01;Locus_id=Os01g0299500;Note=Conserved hypothetical protein.;Transcript_evidence=AK065650 (DDBJ%2C Best hit);ORF_evidence=A2WNU4 (UniProt);NIAS_FLcDNA=J013035N22;Expression=AK065650;TENOR=Os01t0299500-01;KEGG=Os01t0299500-01
Chr01	irgsp1_rep	five_prime_UTR	10983067	10983339	.	-	.	Parent=Os01t0299500-01
Chr01	irgsp1_rep	five_prime_UTR	10982729	10982978	.	-	.	Parent=Os01t0299500-01
Chr01	irgsp1_rep	CDS	10982212	10982728	.	-	0	Parent=Os01t0299500-01
Chr01	irgsp1_rep	CDS	10981407	10981423	.	-	2	Parent=Os01t0299500-01
Chr01	irgsp1_rep	three_prime_UTR	10981400	10981406	.	-	.	Parent=Os01t0299500-01
Chr01	irgsp1_rep	three_prime_UTR	10981176	10981320	.	-	.	Parent=Os01t0299500-01
Chr01	irgsp1_rep	three_prime_UTR	10980741	10981017	.	-	.	Parent=Os01t0299500-01
Chr01	irgsp1_rep	mRNA	10986093	10986991	.	-	.	ID=Os01t0299700-01;Name=Os01t0299700-01;Locus_id=Os01g0299700;Oryzabase Gene Name Synonym(s)=3'-5' exonuclease domain-containing protein;Note=3'-5' exonuclease domain containing protein.;Transcript_evidence=AK108504 (DDBJ%2C Best hit);ORF_evidence=A2WNV3 (UniProt);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: 3'-5' exonuclease activity (GO:0008408);InterPro=3&apos%3B-5&apos%3B exonuclease (IPR002562),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=002-143-H08;Oryzabase=22031;Expression=AK108504;TENOR=Os01t0299700-01;KEGG=Os01t0299700-01
Chr01	irgsp1_rep	five_prime_UTR	10986991	10986991	.	-	.	Parent=Os01t0299700-01
Chr01	irgsp1_rep	CDS	10986277	10986990	.	-	0	Parent=Os01t0299700-01
Chr01	irgsp1_rep	three_prime_UTR	10986093	10986276	.	-	.	Parent=Os01t0299700-01
Chr01	irgsp1_rep	mRNA	10986340	10986999	.	+	.	ID=Os01t0299801-00;Name=Os01t0299801-00;Locus_id=Os01g0299801;Note=Conserved hypothetical protein.;Transcript_evidence=BT019050 (DDBJ);ORF_evidence=NP_001042815.1 (RefSeq);TENOR=Os01t0299801-00
Chr01	irgsp1_rep	CDS	10986340	10986999	.	+	0	Parent=Os01t0299801-00
Chr01	irgsp1_rep	mRNA	10990819	10991617	.	-	.	ID=Os01t0300000-01;Name=Os01t0300000-01;Locus_id=Os01g0300000;Oryzabase Gene Name Synonym(s)=WRN-like exonuclease%2C RecQ helices%2C 3'-5' exonuclease domain-containing protein;Note=3'-5' exonuclease domain containing protein.;Transcript_evidence=AK063585 (DDBJ%2C Best hit);ORF_evidence=A2WNV4 (UniProt);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: 3'-5' exonuclease activity (GO:0008408);InterPro=3'-5' exonuclease (IPR002562),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=001-118-A04;Oryzabase=21300;Expression=AK063585;TENOR=Os01t0300000-01;KEGG=Os01t0300000-01 (EC:3.6.1.-)
Chr01	irgsp1_rep	five_prime_UTR	10991580	10991617	.	-	.	Parent=Os01t0300000-01
Chr01	irgsp1_rep	CDS	10990974	10991579	.	-	0	Parent=Os01t0300000-01
Chr01	irgsp1_rep	three_prime_UTR	10990819	10990973	.	-	.	Parent=Os01t0300000-01
Chr01	irgsp1_rep	mRNA	10999316	11005978	.	-	.	ID=Os01t0300200-01;Name=Os01t0300200-01;Locus_id=Os01g0300200;Note=Similar to ATP-citrate lyase subunit B.;Transcript_evidence=AK070568 (DDBJ%2C Best hit);ORF_evidence=NP_199757.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Biological Process: cellular carbohydrate metabolic process (GO:0044262),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP citrate synthase activity (GO:0003878),Molecular Function: succinate-CoA ligase (ADP-forming) activity (GO:0004775),Molecular Function: transferase activity%2C transferring acyl groups%2C acyl groups converted into alkyl on transfer (GO:0046912);InterPro=Citrate synthase-like (IPR002020),Succinyl-CoA ligase%2C alpha subunit (IPR005810),ATP-citrate lyase/succinyl-CoA ligase (IPR005811),NAD(P)-binding domain (IPR016040),Succinyl-CoA synthetase-like (IPR016102),Citrate synthase-like%2C core (IPR016141),Citrate synthase-like%2C large alpha subdomain (IPR016142),Citrate synthase-like%2C small alpha subdomain (IPR016143),ATP-citrate lyase/succinyl-CoA ligase%2C active site (IPR017440),Succinyl-CoA synthetase%2C beta subunit%2C conserved site (IPR017866);NIAS_FLcDNA=J023057I24;Expression=AK070568;TENOR=Os01t0300200-01;KEGG=Os01t0300200-01 (EC:2.3.3.8)
Chr01	irgsp1_rep	five_prime_UTR	11005840	11005978	.	-	.	Parent=Os01t0300200-01
Chr01	irgsp1_rep	five_prime_UTR	11004228	11004239	.	-	.	Parent=Os01t0300200-01
Chr01	irgsp1_rep	CDS	11004128	11004227	.	-	0	Parent=Os01t0300200-01
Chr01	irgsp1_rep	CDS	11003934	11004036	.	-	2	Parent=Os01t0300200-01
Chr01	irgsp1_rep	CDS	11003776	11003841	.	-	1	Parent=Os01t0300200-01
Chr01	irgsp1_rep	CDS	11003566	11003689	.	-	1	Parent=Os01t0300200-01
Chr01	irgsp1_rep	CDS	11003173	11003307	.	-	0	Parent=Os01t0300200-01
Chr01	irgsp1_rep	CDS	11002862	11002922	.	-	0	Parent=Os01t0300200-01
Chr01	irgsp1_rep	CDS	11002694	11002770	.	-	2	Parent=Os01t0300200-01
Chr01	irgsp1_rep	CDS	11002144	11002299	.	-	0	Parent=Os01t0300200-01
Chr01	irgsp1_rep	CDS	11001929	11002057	.	-	0	Parent=Os01t0300200-01
Chr01	irgsp1_rep	CDS	11001215	11001347	.	-	0	Parent=Os01t0300200-01
Chr01	irgsp1_rep	CDS	11000986	11001113	.	-	2	Parent=Os01t0300200-01
Chr01	irgsp1_rep	CDS	11000782	11000887	.	-	0	Parent=Os01t0300200-01
Chr01	irgsp1_rep	CDS	11000609	11000685	.	-	2	Parent=Os01t0300200-01
Chr01	irgsp1_rep	CDS	11000443	11000513	.	-	0	Parent=Os01t0300200-01
Chr01	irgsp1_rep	CDS	11000063	11000347	.	-	1	Parent=Os01t0300200-01
Chr01	irgsp1_rep	CDS	10999806	10999881	.	-	1	Parent=Os01t0300200-01
Chr01	irgsp1_rep	three_prime_UTR	10999316	10999805	.	-	.	Parent=Os01t0300200-01
Chr01	irgsp1_rep	mRNA	10999407	11005946	.	-	.	ID=Os01t0300200-02;Name=Os01t0300200-02;Locus_id=Os01g0300200;Note=Similar to ATP-citrate lyase subunit B.;Transcript_evidence=AK099208 (DDBJ%2C Best hit);ORF_evidence=NP_199757.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Biological Process: cellular carbohydrate metabolic process (GO:0044262),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP citrate synthase activity (GO:0003878),Molecular Function: succinate-CoA ligase (ADP-forming) activity (GO:0004775),Molecular Function: transferase activity%2C transferring acyl groups%2C acyl groups converted into alkyl on transfer (GO:0046912);InterPro=Citrate synthase-like (IPR002020),Succinyl-CoA ligase%2C alpha subunit (IPR005810),ATP-citrate lyase/succinyl-CoA ligase (IPR005811),NAD(P)-binding domain (IPR016040),Succinyl-CoA synthetase-like (IPR016102),Citrate synthase-like%2C core (IPR016141),Citrate synthase-like%2C large alpha subdomain (IPR016142),Citrate synthase-like%2C small alpha subdomain (IPR016143),ATP-citrate lyase/succinyl-CoA ligase%2C active site (IPR017440),Succinyl-CoA synthetase%2C beta subunit%2C conserved site (IPR017866);NIAS_FLcDNA=J013055I05;Expression=AK099208;TENOR=Os01t0300200-02;KEGG=Os01t0300200-02 (EC:2.3.3.8)
Chr01	irgsp1_rep	five_prime_UTR	11005840	11005946	.	-	.	Parent=Os01t0300200-02
Chr01	irgsp1_rep	five_prime_UTR	11004228	11004239	.	-	.	Parent=Os01t0300200-02
Chr01	irgsp1_rep	CDS	11004128	11004227	.	-	0	Parent=Os01t0300200-02
Chr01	irgsp1_rep	CDS	11003934	11004036	.	-	2	Parent=Os01t0300200-02
Chr01	irgsp1_rep	CDS	11003776	11003841	.	-	1	Parent=Os01t0300200-02
Chr01	irgsp1_rep	CDS	11003566	11003689	.	-	1	Parent=Os01t0300200-02
Chr01	irgsp1_rep	CDS	11003173	11003307	.	-	0	Parent=Os01t0300200-02
Chr01	irgsp1_rep	CDS	11002862	11002922	.	-	0	Parent=Os01t0300200-02
Chr01	irgsp1_rep	CDS	11002694	11002770	.	-	2	Parent=Os01t0300200-02
Chr01	irgsp1_rep	CDS	11002144	11002299	.	-	0	Parent=Os01t0300200-02
Chr01	irgsp1_rep	CDS	11001929	11002057	.	-	0	Parent=Os01t0300200-02
Chr01	irgsp1_rep	CDS	11001215	11001347	.	-	0	Parent=Os01t0300200-02
Chr01	irgsp1_rep	CDS	11000986	11001113	.	-	2	Parent=Os01t0300200-02
Chr01	irgsp1_rep	CDS	11000782	11000887	.	-	0	Parent=Os01t0300200-02
Chr01	irgsp1_rep	CDS	11000609	11000685	.	-	2	Parent=Os01t0300200-02
Chr01	irgsp1_rep	CDS	11000443	11000513	.	-	0	Parent=Os01t0300200-02
Chr01	irgsp1_rep	CDS	11000063	11000347	.	-	1	Parent=Os01t0300200-02
Chr01	irgsp1_rep	CDS	10999806	10999881	.	-	1	Parent=Os01t0300200-02
Chr01	irgsp1_rep	three_prime_UTR	10999407	10999805	.	-	.	Parent=Os01t0300200-02
Chr01	irgsp1_rep	mRNA	10999527	11003597	.	-	.	ID=Os01t0300200-03;Name=Os01t0300200-03;Locus_id=Os01g0300200;Note=Similar to ACLB-1 (ATP-citrate lyase B-1).;Transcript_evidence=AK062011 (DDBJ%2C Best hit);ORF_evidence=XP_002863984.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Biological Process: cellular carbohydrate metabolic process (GO:0044262),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP citrate synthase activity (GO:0003878),Molecular Function: succinate-CoA ligase (ADP-forming) activity (GO:0004775),Molecular Function: transferase activity%2C transferring acyl groups%2C acyl groups converted into alkyl on transfer (GO:0046912);InterPro=Citrate synthase-like (IPR002020),Succinyl-CoA ligase%2C alpha subunit (IPR005810),ATP-citrate lyase/succinyl-CoA ligase (IPR005811),Succinyl-CoA synthetase-like (IPR016102),Citrate synthase-like%2C core (IPR016141),Citrate synthase-like%2C large alpha subdomain (IPR016142),Citrate synthase-like%2C small alpha subdomain (IPR016143),ATP-citrate lyase/succinyl-CoA ligase%2C active site (IPR017440),Succinyl-CoA synthetase%2C beta subunit%2C conserved site (IPR017866);NIAS_FLcDNA=001-043-E06;Expression=AK062011;TENOR=Os01t0300200-03;KEGG=Os01t0300200-03 (EC:2.3.3.8)
Chr01	irgsp1_rep	five_prime_UTR	11003596	11003597	.	-	.	Parent=Os01t0300200-03
Chr01	irgsp1_rep	CDS	11003566	11003595	.	-	0	Parent=Os01t0300200-03
Chr01	irgsp1_rep	CDS	11003173	11003307	.	-	0	Parent=Os01t0300200-03
Chr01	irgsp1_rep	CDS	11002862	11002922	.	-	0	Parent=Os01t0300200-03
Chr01	irgsp1_rep	CDS	11002694	11002770	.	-	2	Parent=Os01t0300200-03
Chr01	irgsp1_rep	CDS	11002144	11002299	.	-	0	Parent=Os01t0300200-03
Chr01	irgsp1_rep	CDS	11001929	11002057	.	-	0	Parent=Os01t0300200-03
Chr01	irgsp1_rep	CDS	11001215	11001347	.	-	0	Parent=Os01t0300200-03
Chr01	irgsp1_rep	CDS	11000986	11001113	.	-	2	Parent=Os01t0300200-03
Chr01	irgsp1_rep	CDS	11000782	11000887	.	-	0	Parent=Os01t0300200-03
Chr01	irgsp1_rep	CDS	11000609	11000685	.	-	2	Parent=Os01t0300200-03
Chr01	irgsp1_rep	CDS	11000443	11000513	.	-	0	Parent=Os01t0300200-03
Chr01	irgsp1_rep	CDS	11000063	11000347	.	-	1	Parent=Os01t0300200-03
Chr01	irgsp1_rep	CDS	10999806	10999881	.	-	1	Parent=Os01t0300200-03
Chr01	irgsp1_rep	three_prime_UTR	10999527	10999805	.	-	.	Parent=Os01t0300200-03
Chr01	irgsp1_rep	mRNA	11012295	11016215	.	+	.	ID=Os01t0300400-01;Name=Os01t0300400-01;Locus_id=Os01g0300400;Note=Hypothetical conserved gene.;Transcript_evidence=AK289242 (DDBJ%2C Best hit);ORF_evidence=Q6ATF7 (UniProt);NIAS_FLcDNA=J100076F10;TENOR=Os01t0300400-01;KEGG=Os01t0300400-01
Chr01	irgsp1_rep	five_prime_UTR	11012295	11012567	.	+	.	Parent=Os01t0300400-01
Chr01	irgsp1_rep	five_prime_UTR	11012643	11012737	.	+	.	Parent=Os01t0300400-01
Chr01	irgsp1_rep	five_prime_UTR	11013818	11013989	.	+	.	Parent=Os01t0300400-01
Chr01	irgsp1_rep	five_prime_UTR	11014238	11014248	.	+	.	Parent=Os01t0300400-01
Chr01	irgsp1_rep	CDS	11014249	11014387	.	+	0	Parent=Os01t0300400-01
Chr01	irgsp1_rep	CDS	11014500	11014721	.	+	2	Parent=Os01t0300400-01
Chr01	irgsp1_rep	CDS	11014925	11014972	.	+	2	Parent=Os01t0300400-01
Chr01	irgsp1_rep	CDS	11015088	11015219	.	+	2	Parent=Os01t0300400-01
Chr01	irgsp1_rep	CDS	11015324	11015356	.	+	2	Parent=Os01t0300400-01
Chr01	irgsp1_rep	CDS	11015508	11015569	.	+	2	Parent=Os01t0300400-01
Chr01	irgsp1_rep	three_prime_UTR	11015570	11015648	.	+	.	Parent=Os01t0300400-01
Chr01	irgsp1_rep	three_prime_UTR	11015741	11016215	.	+	.	Parent=Os01t0300400-01
Chr01	irgsp1_rep	mRNA	11025448	11029186	.	-	.	ID=Os01t0300600-01;Name=Os01t0300600-01;Locus_id=Os01g0300600;Note=Similar to carbohydrate binding.;Transcript_evidence=AK058273 (DDBJ%2C Best hit);ORF_evidence=NP_191795.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Collagen-binding surface protein Cna%2C B-type domain (IPR008970),Immunoglobulin-like fold (IPR013783),Carbohydrate-binding-like fold (IPR013784);NIAS_FLcDNA=001-013-B11;TENOR=Os01t0300600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	11029185	11029186	.	-	.	Parent=Os01t0300600-01
Chr01	irgsp1_rep	CDS	11029032	11029184	.	-	0	Parent=Os01t0300600-01
Chr01	irgsp1_rep	CDS	11028023	11028250	.	-	0	Parent=Os01t0300600-01
Chr01	irgsp1_rep	CDS	11027392	11027483	.	-	0	Parent=Os01t0300600-01
Chr01	irgsp1_rep	CDS	11026862	11027090	.	-	1	Parent=Os01t0300600-01
Chr01	irgsp1_rep	CDS	11026402	11026758	.	-	0	Parent=Os01t0300600-01
Chr01	irgsp1_rep	CDS	11026036	11026109	.	-	0	Parent=Os01t0300600-01
Chr01	irgsp1_rep	CDS	11025836	11025941	.	-	1	Parent=Os01t0300600-01
Chr01	irgsp1_rep	three_prime_UTR	11025448	11025835	.	-	.	Parent=Os01t0300600-01
Chr01	irgsp1_rep	mRNA	11058878	11063860	.	+	.	ID=Os01t0300900-01;Name=Os01t0300900-01;Locus_id=Os01g0300900;Note=Galactose oxidase/kelch%2C beta-propeller domain containing protein.;Transcript_evidence=AK101262 (DDBJ%2C Best hit);ORF_evidence=NP_001147852.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Kelch repeat type 1 (IPR006652),Kelch repeat type 2 (IPR011498),Kelch-type beta propeller (IPR015915),Galactose oxidase%2C beta-propeller (IPR015916);NIAS_FLcDNA=J033032J01;Expression=AK101262;TENOR=Os01t0300900-01;KEGG=Os01t0300900-01
Chr01	irgsp1_rep	five_prime_UTR	11058878	11059527	.	+	.	Parent=Os01t0300900-01
Chr01	irgsp1_rep	CDS	11059528	11059641	.	+	0	Parent=Os01t0300900-01
Chr01	irgsp1_rep	CDS	11060922	11061455	.	+	0	Parent=Os01t0300900-01
Chr01	irgsp1_rep	CDS	11061960	11062025	.	+	0	Parent=Os01t0300900-01
Chr01	irgsp1_rep	CDS	11062125	11062291	.	+	0	Parent=Os01t0300900-01
Chr01	irgsp1_rep	CDS	11062369	11062516	.	+	1	Parent=Os01t0300900-01
Chr01	irgsp1_rep	CDS	11062597	11062687	.	+	0	Parent=Os01t0300900-01
Chr01	irgsp1_rep	CDS	11062774	11063123	.	+	2	Parent=Os01t0300900-01
Chr01	irgsp1_rep	CDS	11063208	11063312	.	+	0	Parent=Os01t0300900-01
Chr01	irgsp1_rep	CDS	11063414	11063713	.	+	0	Parent=Os01t0300900-01
Chr01	irgsp1_rep	three_prime_UTR	11063714	11063860	.	+	.	Parent=Os01t0300900-01
Chr01	irgsp1_rep	mRNA	11061248	11063872	.	+	.	ID=Os01t0300900-02;Name=Os01t0300900-02;Locus_id=Os01g0300900;Note=Hypothetical conserved gene.;Transcript_evidence=AK119559 (DDBJ%2C Best hit);ORF_evidence=A2ZS74 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Kelch repeat type 1 (IPR006652),Kelch-type beta propeller (IPR015915);NIAS_FLcDNA=002-107-E12;Expression=AK119559;TENOR=Os01t0300900-02;KEGG=Os01t0300900-02
Chr01	irgsp1_rep	five_prime_UTR	11061248	11061248	.	+	.	Parent=Os01t0300900-02
Chr01	irgsp1_rep	CDS	11061249	11061455	.	+	0	Parent=Os01t0300900-02
Chr01	irgsp1_rep	CDS	11061960	11062025	.	+	0	Parent=Os01t0300900-02
Chr01	irgsp1_rep	CDS	11062125	11062291	.	+	0	Parent=Os01t0300900-02
Chr01	irgsp1_rep	CDS	11062369	11062516	.	+	1	Parent=Os01t0300900-02
Chr01	irgsp1_rep	CDS	11062597	11062687	.	+	0	Parent=Os01t0300900-02
Chr01	irgsp1_rep	CDS	11062774	11063123	.	+	2	Parent=Os01t0300900-02
Chr01	irgsp1_rep	CDS	11063208	11063312	.	+	0	Parent=Os01t0300900-02
Chr01	irgsp1_rep	CDS	11063414	11063713	.	+	0	Parent=Os01t0300900-02
Chr01	irgsp1_rep	three_prime_UTR	11063714	11063872	.	+	.	Parent=Os01t0300900-02
Chr01	irgsp1_rep	mRNA	11065094	11068774	.	-	.	ID=Os01t0301000-01;Name=Os01t0301000-01;Locus_id=Os01g0301000;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK066192 (DDBJ%2C Best hit),AK073246 (DDBJ%2C Best hit);ORF_evidence=A2WNW2 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013054P19,J033005A18;Expression=AK066192;TENOR=Os01t0301000-01;KEGG=Os01t0301000-01
Chr01	irgsp1_rep	five_prime_UTR	11068710	11068774	.	-	.	Parent=Os01t0301000-01
Chr01	irgsp1_rep	CDS	11068383	11068709	.	-	0	Parent=Os01t0301000-01
Chr01	irgsp1_rep	CDS	11065438	11066679	.	-	0	Parent=Os01t0301000-01
Chr01	irgsp1_rep	three_prime_UTR	11065094	11065437	.	-	.	Parent=Os01t0301000-01
Chr01	irgsp1_rep	mRNA	11070897	11071960	.	+	.	ID=Os01t0301100-01;Name=Os01t0301100-01;Locus_id=Os01g0301100;Note=Conserved hypothetical protein.;Transcript_evidence=AK105556 (DDBJ%2C Best hit);ORF_evidence=B8BJI3 (UniProt);NIAS_FLcDNA=001-128-B04;TENOR=Os01t0301100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	11070897	11070931	.	+	.	Parent=Os01t0301100-01
Chr01	irgsp1_rep	CDS	11070932	11071174	.	+	0	Parent=Os01t0301100-01
Chr01	irgsp1_rep	CDS	11071316	11071375	.	+	0	Parent=Os01t0301100-01
Chr01	irgsp1_rep	three_prime_UTR	11071376	11071960	.	+	.	Parent=Os01t0301100-01
Chr01	irgsp1_rep	mRNA	11075123	11077640	.	+	.	ID=Os01t0301300-01;Name=Os01t0301300-01;Locus_id=Os01g0301300;Note=Hypothetical protein.;Transcript_evidence=AK107188 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-124-H11;Expression=AK107188;TENOR=Os01t0301300-01;KEGG=Os01t0301300-01
Chr01	irgsp1_rep	five_prime_UTR	11075123	11075195	.	+	.	Parent=Os01t0301300-01
Chr01	irgsp1_rep	CDS	11075196	11075372	.	+	0	Parent=Os01t0301300-01
Chr01	irgsp1_rep	CDS	11076498	11076737	.	+	0	Parent=Os01t0301300-01
Chr01	irgsp1_rep	three_prime_UTR	11076738	11077640	.	+	.	Parent=Os01t0301300-01
Chr01	irgsp1_rep	mRNA	11078206	11083482	.	-	.	ID=Os01t0301500-01;Name=Os01t0301500-01;Locus_id=Os01g0301500;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK064623 (DDBJ%2C Best hit);ORF_evidence=B8A6P8 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-113-E04;Expression=AK064623;TENOR=Os01t0301500-01;KEGG=Os01t0301500-01
Chr01	irgsp1_rep	five_prime_UTR	11083462	11083482	.	-	.	Parent=Os01t0301500-01
Chr01	irgsp1_rep	CDS	11083159	11083461	.	-	0	Parent=Os01t0301500-01
Chr01	irgsp1_rep	CDS	11078417	11079568	.	-	0	Parent=Os01t0301500-01
Chr01	irgsp1_rep	three_prime_UTR	11078206	11078416	.	-	.	Parent=Os01t0301500-01
Chr01	irgsp1_rep	mRNA	11089065	11093987	.	-	.	ID=Os01t0301700-01;Name=Os01t0301700-01;Locus_id=Os01g0301700;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK100563 (DDBJ%2C Best hit);ORF_evidence=A2WNW8 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J023104I21;Expression=AK100563;TENOR=Os01t0301700-01;KEGG=Os01t0301700-01
Chr01	irgsp1_rep	five_prime_UTR	11093947	11093987	.	-	.	Parent=Os01t0301700-01
Chr01	irgsp1_rep	CDS	11093668	11093946	.	-	0	Parent=Os01t0301700-01
Chr01	irgsp1_rep	CDS	11089799	11091034	.	-	0	Parent=Os01t0301700-01
Chr01	irgsp1_rep	three_prime_UTR	11089065	11089798	.	-	.	Parent=Os01t0301700-01
Chr01	irgsp1_rep	mRNA	11092527	11093959	.	-	.	ID=Os01t0301700-02;Name=Os01t0301700-02;Locus_id=Os01g0301700;Note=Hypothetical conserved gene.;Transcript_evidence=AK064223 (DDBJ%2C Best hit);ORF_evidence=A2WNW8 (UniProt);NIAS_FLcDNA=002-104-G03;Expression=AK064223;TENOR=Os01t0301700-02;KEGG=Os01t0301700-02
Chr01	irgsp1_rep	five_prime_UTR	11093947	11093959	.	-	.	Parent=Os01t0301700-02
Chr01	irgsp1_rep	CDS	11093548	11093946	.	-	0	Parent=Os01t0301700-02
Chr01	irgsp1_rep	three_prime_UTR	11092527	11093547	.	-	.	Parent=Os01t0301700-02
Chr01	irgsp1_rep	mRNA	11110199	11110480	.	-	.	ID=Os01t0301900-00;Name=Os01t0301900-00;Locus_id=Os01g0301900;Note=Protein of unknown function DUF247%2C plant domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001042825.2 (RefSeq);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);TENOR=Os01t0301900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	11110199	11110480	.	-	0	Parent=Os01t0301900-00
Chr01	irgsp1_rep	mRNA	11118689	11119272	.	+	.	ID=Os01t0302000-00;Name=Os01t0302000-00;Locus_id=Os01g0302000;Note=Hypothetical conserved gene.;Transcript_evidence=CT834849 (DDBJ%2C Best hit);ORF_evidence=Q9FP36 (UniProt);TENOR=Os01t0302000-00;KEGG=Os01t0302000-00
Chr01	irgsp1_rep	five_prime_UTR	11118689	11118748	.	+	.	Parent=Os01t0302000-00
Chr01	irgsp1_rep	CDS	11118749	11118778	.	+	0	Parent=Os01t0302000-00
Chr01	irgsp1_rep	CDS	11118903	11119052	.	+	0	Parent=Os01t0302000-00
Chr01	irgsp1_rep	three_prime_UTR	11119053	11119272	.	+	.	Parent=Os01t0302000-00
Chr01	irgsp1_rep	mRNA	11129520	11131876	.	+	.	ID=Os01t0302100-01;Name=Os01t0302100-01;Locus_id=Os01g0302100;Note=Conserved hypothetical protein.;Transcript_evidence=AK100875 (DDBJ%2C Best hit);ORF_evidence=B8A6Q1 (UniProt);NIAS_FLcDNA=J023126J21;TENOR=Os01t0302100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	11129520	11129685	.	+	.	Parent=Os01t0302100-01
Chr01	irgsp1_rep	CDS	11129686	11130138	.	+	0	Parent=Os01t0302100-01
Chr01	irgsp1_rep	three_prime_UTR	11130139	11130706	.	+	.	Parent=Os01t0302100-01
Chr01	irgsp1_rep	three_prime_UTR	11130948	11131039	.	+	.	Parent=Os01t0302100-01
Chr01	irgsp1_rep	three_prime_UTR	11131178	11131235	.	+	.	Parent=Os01t0302100-01
Chr01	irgsp1_rep	three_prime_UTR	11131345	11131876	.	+	.	Parent=Os01t0302100-01
Chr01	irgsp1_rep	mRNA	11155196	11155899	.	-	.	ID=Os01t0302250-01;Name=Os01t0302250-01;Locus_id=Os01g0302250;Note=Conserved hypothetical protein.;Transcript_evidence=AK242045 (DDBJ%2C Best hit);ORF_evidence=NP_001172294.1 (RefSeq);NIAS_FLcDNA=J075120I09;TENOR=Os01t0302250-01;KEGG=Os01t0302250-01
Chr01	irgsp1_rep	CDS	11155324	11155899	.	-	0	Parent=Os01t0302250-01
Chr01	irgsp1_rep	three_prime_UTR	11155196	11155323	.	-	.	Parent=Os01t0302250-01
Chr01	irgsp1_rep	mRNA	11167043	11174451	.	+	.	ID=Os01t0302500-01;Name=Os01t0302500-01;Locus_id=Os01g0302500;CGSNL Gene Symbol=OSH6;CGSNL Gene Name=HOMEOBOX 6;Oryzabase Gene Symbol Synonym(s)=OsH6%2C HOS16;Oryzabase Gene Name Synonym(s)=Oryza sativa homeobox6%2C Rice KNOX gene-6%2C Homeobox protein knotted-1-like 1%2C Homeobox protein OSH6%2C Homeobox protein HOS16%2C Oryza sativa Homeobox 6;Note=Knotted1-type homeobox protein OSH6.;Transcript_evidence=AK241312 (DDBJ%2C Best hit);ORF_evidence=Q9FP29 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),ELK (IPR005539),KNOX1 (IPR005540),KNOX2 (IPR005541),Homeobox KN domain (IPR008422),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Homeobox%2C conserved site (IPR017970);NIAS_FLcDNA=J065141L09;Oryzabase=2977;TENOR=Os01t0302500-01;KEGG=Os01t0302500-01
Chr01	irgsp1_rep	five_prime_UTR	11167043	11167243	.	+	.	Parent=Os01t0302500-01
Chr01	irgsp1_rep	CDS	11167244	11167438	.	+	0	Parent=Os01t0302500-01
Chr01	irgsp1_rep	CDS	11167597	11167716	.	+	0	Parent=Os01t0302500-01
Chr01	irgsp1_rep	CDS	11167903	11168053	.	+	0	Parent=Os01t0302500-01
Chr01	irgsp1_rep	CDS	11173341	11173591	.	+	2	Parent=Os01t0302500-01
Chr01	irgsp1_rep	CDS	11173847	11174035	.	+	0	Parent=Os01t0302500-01
Chr01	irgsp1_rep	three_prime_UTR	11174036	11174451	.	+	.	Parent=Os01t0302500-01
Chr01	irgsp1_rep	mRNA	11191761	11192447	.	+	.	ID=Os01t0302800-01;Name=Os01t0302800-01;Locus_id=Os01g0302800;Note=Conserved hypothetical protein.;Transcript_evidence=AK062358 (DDBJ%2C Best hit);ORF_evidence=Q9FP28 (UniProt);NIAS_FLcDNA=001-101-H02;Expression=AK062358;TENOR=Os01t0302800-01;KEGG=Os01t0302800-01
Chr01	irgsp1_rep	CDS	11191761	11192147	.	+	0	Parent=Os01t0302800-01
Chr01	irgsp1_rep	three_prime_UTR	11192148	11192447	.	+	.	Parent=Os01t0302800-01
Chr01	irgsp1_rep	mRNA	11198211	11200311	.	+	.	ID=Os01t0302900-01;Name=Os01t0302900-01;Locus_id=Os01g0302900;Note=Conserved hypothetical protein.;Transcript_evidence=AK107212 (DDBJ%2C Best hit);ORF_evidence=Q9FP26 (UniProt);NIAS_FLcDNA=002-125-C03;TENOR=Os01t0302900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	11198211	11199237	.	+	.	Parent=Os01t0302900-01
Chr01	irgsp1_rep	CDS	11199238	11199504	.	+	0	Parent=Os01t0302900-01
Chr01	irgsp1_rep	three_prime_UTR	11199505	11200311	.	+	.	Parent=Os01t0302900-01
Chr01	irgsp1_rep	mRNA	11202609	11203331	.	-	.	ID=Os01t0303000-02;Name=Os01t0303000-02;Locus_id=Os01g0303000;Note=Similar to CP12 (Fragment).;Transcript_evidence=AK058929 (DDBJ%2C Best hit),AK066266 (DDBJ%2C Best hit),AK102013 (DDBJ%2C Best hit);ORF_evidence=B6U3H3 (UniProt);NIAS_FLcDNA=001-009-C09,J013056L22,J033080D15;Expression=AK058929;TENOR=Os01t0303000-02;KEGG=Os01t0303000-02
Chr01	irgsp1_rep	five_prime_UTR	11203263	11203331	.	-	.	Parent=Os01t0303000-02
Chr01	irgsp1_rep	CDS	11202888	11203262	.	-	0	Parent=Os01t0303000-02
Chr01	irgsp1_rep	three_prime_UTR	11202609	11202887	.	-	.	Parent=Os01t0303000-02
Chr01	irgsp1_rep	mRNA	11208573	11209811	.	+	.	ID=Os01t0303100-01;Name=Os01t0303100-01;Locus_id=Os01g0303100;Note=Similar to Chitinase precursor (EC 3.2.1.17).;Transcript_evidence=AK062603 (DDBJ%2C Best hit);ORF_evidence=Q6XD74 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 18%2C catalytic domain (IPR001223),Glycoside hydrolase%2C chitinase active site (IPR001579),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-103-G12;Expression=AK062603;TENOR=Os01t0303100-01;KEGG=Os01t0303100-01 (EC:3.2.1.14%2C EC:3.2.1.17)
Chr01	irgsp1_rep	five_prime_UTR	11208573	11208609	.	+	.	Parent=Os01t0303100-01
Chr01	irgsp1_rep	CDS	11208610	11209617	.	+	0	Parent=Os01t0303100-01
Chr01	irgsp1_rep	three_prime_UTR	11209618	11209811	.	+	.	Parent=Os01t0303100-01
Chr01	irgsp1_rep	mRNA	11211855	11221413	.	+	.	ID=Os01t0303200-01;Name=Os01t0303200-01;Locus_id=Os01g0303200;Note=Conserved hypothetical protein.;Transcript_evidence=AK073769 (DDBJ%2C Best hit);ORF_evidence=B8A6Q4 (UniProt);NIAS_FLcDNA=J033067N09;Expression=AK073769;TENOR=Os01t0303200-01;KEGG=Os01t0303200-01
Chr01	irgsp1_rep	five_prime_UTR	11211855	11212097	.	+	.	Parent=Os01t0303200-01
Chr01	irgsp1_rep	CDS	11212098	11212216	.	+	0	Parent=Os01t0303200-01
Chr01	irgsp1_rep	CDS	11213559	11213676	.	+	1	Parent=Os01t0303200-01
Chr01	irgsp1_rep	CDS	11214350	11214446	.	+	0	Parent=Os01t0303200-01
Chr01	irgsp1_rep	CDS	11215098	11215204	.	+	2	Parent=Os01t0303200-01
Chr01	irgsp1_rep	CDS	11215689	11215811	.	+	0	Parent=Os01t0303200-01
Chr01	irgsp1_rep	CDS	11215979	11216132	.	+	0	Parent=Os01t0303200-01
Chr01	irgsp1_rep	CDS	11216506	11216566	.	+	2	Parent=Os01t0303200-01
Chr01	irgsp1_rep	CDS	11216672	11217027	.	+	1	Parent=Os01t0303200-01
Chr01	irgsp1_rep	CDS	11218459	11219980	.	+	2	Parent=Os01t0303200-01
Chr01	irgsp1_rep	CDS	11220093	11220339	.	+	1	Parent=Os01t0303200-01
Chr01	irgsp1_rep	three_prime_UTR	11220340	11220586	.	+	.	Parent=Os01t0303200-01
Chr01	irgsp1_rep	three_prime_UTR	11221053	11221413	.	+	.	Parent=Os01t0303200-01
Chr01	irgsp1_rep	mRNA	11221847	11223469	.	-	.	ID=Os01t0303300-01;Name=Os01t0303300-01;Locus_id=Os01g0303300;Note=Similar to Stress-inducible membrane pore protein.;Transcript_evidence=AK242170 (DDBJ%2C Best hit);ORF_evidence=D9ZLW0 (UniProt);InterPro=Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 (IPR003397);NIAS_FLcDNA=J075157P20;TENOR=Os01t0303300-01;KEGG=Os01t0303300-01
Chr01	irgsp1_rep	five_prime_UTR	11223381	11223469	.	-	.	Parent=Os01t0303300-01
Chr01	irgsp1_rep	CDS	11223200	11223380	.	-	0	Parent=Os01t0303300-01
Chr01	irgsp1_rep	CDS	11222824	11222883	.	-	2	Parent=Os01t0303300-01
Chr01	irgsp1_rep	CDS	11222659	11222690	.	-	2	Parent=Os01t0303300-01
Chr01	irgsp1_rep	CDS	11222535	11222568	.	-	0	Parent=Os01t0303300-01
Chr01	irgsp1_rep	CDS	11222354	11222421	.	-	2	Parent=Os01t0303300-01
Chr01	irgsp1_rep	CDS	11222103	11222246	.	-	0	Parent=Os01t0303300-01
Chr01	irgsp1_rep	three_prime_UTR	11221847	11222102	.	-	.	Parent=Os01t0303300-01
Chr01	irgsp1_rep	mRNA	11222066	11223392	.	+	.	ID=Os01t0303401-00;Name=Os01t0303401-00;Locus_id=Os01g0303401;Note=Hypothetical gene.;Transcript_evidence=U43718 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0303401-00;KEGG=Os01t0303401-00
Chr01	irgsp1_rep	five_prime_UTR	11222066	11222109	.	+	.	Parent=Os01t0303401-00
Chr01	irgsp1_rep	CDS	11222110	11222250	.	+	0	Parent=Os01t0303401-00
Chr01	irgsp1_rep	CDS	11222358	11222444	.	+	0	Parent=Os01t0303401-00
Chr01	irgsp1_rep	CDS	11222776	11222847	.	+	0	Parent=Os01t0303401-00
Chr01	irgsp1_rep	three_prime_UTR	11222848	11222867	.	+	.	Parent=Os01t0303401-00
Chr01	irgsp1_rep	three_prime_UTR	11223183	11223392	.	+	.	Parent=Os01t0303401-00
Chr01	irgsp1_rep	mRNA	11231975	11234809	.	-	.	ID=Os01t0303600-01;Name=Os01t0303600-01;Locus_id=Os01g0303600;Oryzabase Gene Symbol Synonym(s)=OsRFPV-1;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPV-1%2C RING-V protein 1;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK099496 (DDBJ%2C Best hit);ORF_evidence=NP_001150090.1 (RefSeq);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-CH-type (IPR011016),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Protein of unknown function DUF3675 (IPR022143);NIAS_FLcDNA=J013027L08;Oryzabase=11800;Expression=AK099496;TENOR=Os01t0303600-01;KEGG=Os01t0303600-01
Chr01	irgsp1_rep	five_prime_UTR	11234714	11234809	.	-	.	Parent=Os01t0303600-01
Chr01	irgsp1_rep	CDS	11234594	11234713	.	-	0	Parent=Os01t0303600-01
Chr01	irgsp1_rep	CDS	11234336	11234407	.	-	0	Parent=Os01t0303600-01
Chr01	irgsp1_rep	CDS	11233788	11233855	.	-	0	Parent=Os01t0303600-01
Chr01	irgsp1_rep	CDS	11232715	11232844	.	-	1	Parent=Os01t0303600-01
Chr01	irgsp1_rep	CDS	11232512	11232595	.	-	0	Parent=Os01t0303600-01
Chr01	irgsp1_rep	CDS	11232286	11232393	.	-	0	Parent=Os01t0303600-01
Chr01	irgsp1_rep	CDS	11232126	11232206	.	-	0	Parent=Os01t0303600-01
Chr01	irgsp1_rep	three_prime_UTR	11231975	11232125	.	-	.	Parent=Os01t0303600-01
Chr01	irgsp1_rep	mRNA	11245253	11246737	.	+	.	ID=Os01t0303800-01;Name=Os01t0303800-01;Locus_id=Os01g0303800;Note=UspA domain containing protein.;Transcript_evidence=AK060078 (DDBJ%2C Best hit);ORF_evidence=B6SNQ1 (UniProt);GO=Biological Process: response to stress (GO:0006950);InterPro=Universal stress protein A (IPR006015),UspA (IPR006016),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=006-306-C04;Expression=AK060078;TENOR=Os01t0303800-01;KEGG=Os01t0303800-01
Chr01	irgsp1_rep	five_prime_UTR	11245253	11245344	.	+	.	Parent=Os01t0303800-01
Chr01	irgsp1_rep	five_prime_UTR	11245413	11245456	.	+	.	Parent=Os01t0303800-01
Chr01	irgsp1_rep	CDS	11245457	11245700	.	+	0	Parent=Os01t0303800-01
Chr01	irgsp1_rep	CDS	11245804	11245910	.	+	2	Parent=Os01t0303800-01
Chr01	irgsp1_rep	CDS	11245986	11246104	.	+	0	Parent=Os01t0303800-01
Chr01	irgsp1_rep	CDS	11246407	11246485	.	+	1	Parent=Os01t0303800-01
Chr01	irgsp1_rep	three_prime_UTR	11246486	11246737	.	+	.	Parent=Os01t0303800-01
Chr01	irgsp1_rep	mRNA	11245276	11246714	.	+	.	ID=Os01t0303800-02;Name=Os01t0303800-02;Locus_id=Os01g0303800;Note=UspA domain containing protein.;Transcript_evidence=AK121626 (DDBJ%2C Best hit);ORF_evidence=B6SNQ1 (UniProt);GO=Biological Process: response to stress (GO:0006950);InterPro=Universal stress protein A (IPR006015),UspA (IPR006016),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J033048C05;Expression=AK121626;TENOR=Os01t0303800-02;KEGG=Os01t0303800-02
Chr01	irgsp1_rep	five_prime_UTR	11245276	11245456	.	+	.	Parent=Os01t0303800-02
Chr01	irgsp1_rep	CDS	11245457	11245700	.	+	0	Parent=Os01t0303800-02
Chr01	irgsp1_rep	CDS	11245804	11245910	.	+	2	Parent=Os01t0303800-02
Chr01	irgsp1_rep	CDS	11245986	11246104	.	+	0	Parent=Os01t0303800-02
Chr01	irgsp1_rep	CDS	11246407	11246485	.	+	1	Parent=Os01t0303800-02
Chr01	irgsp1_rep	three_prime_UTR	11246486	11246714	.	+	.	Parent=Os01t0303800-02
Chr01	irgsp1_rep	mRNA	11249654	11251227	.	-	.	ID=Os01t0304000-01;Name=Os01t0304000-01;Locus_id=Os01g0304000;Note=Similar to Ribosomal protein L29.;Transcript_evidence=AK121735 (DDBJ%2C Best hit);ORF_evidence=NP_001055291.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L29e (IPR002673);NIAS_FLcDNA=J033084E10;Expression=AK121735;TENOR=Os01t0304000-01;KEGG=Os01t0304000-01
Chr01	irgsp1_rep	five_prime_UTR	11251168	11251227	.	-	.	Parent=Os01t0304000-01
Chr01	irgsp1_rep	five_prime_UTR	11251043	11251054	.	-	.	Parent=Os01t0304000-01
Chr01	irgsp1_rep	CDS	11250941	11251042	.	-	0	Parent=Os01t0304000-01
Chr01	irgsp1_rep	CDS	11249945	11250025	.	-	0	Parent=Os01t0304000-01
Chr01	irgsp1_rep	three_prime_UTR	11249654	11249944	.	-	.	Parent=Os01t0304000-01
Chr01	irgsp1_rep	mRNA	11253627	11266197	.	+	.	ID=Os01t0304050-01;Name=Os01t0304050-01;Locus_id=Os01g0304050;Note=Non-protein coding transcript.;Transcript_evidence=AK242860 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090074F21;TENOR=Os01t0304050-01
Chr01	irgsp1_rep	exon	11253627	11255237	.	+	.	Parent=Os01t0304050-01
Chr01	irgsp1_rep	exon	11255322	11255483	.	+	.	Parent=Os01t0304050-01
Chr01	irgsp1_rep	exon	11255901	11256301	.	+	.	Parent=Os01t0304050-01
Chr01	irgsp1_rep	exon	11257119	11257313	.	+	.	Parent=Os01t0304050-01
Chr01	irgsp1_rep	exon	11257637	11257901	.	+	.	Parent=Os01t0304050-01
Chr01	irgsp1_rep	exon	11258755	11258816	.	+	.	Parent=Os01t0304050-01
Chr01	irgsp1_rep	exon	11259358	11259458	.	+	.	Parent=Os01t0304050-01
Chr01	irgsp1_rep	exon	11259690	11259804	.	+	.	Parent=Os01t0304050-01
Chr01	irgsp1_rep	exon	11260308	11260399	.	+	.	Parent=Os01t0304050-01
Chr01	irgsp1_rep	exon	11263998	11264076	.	+	.	Parent=Os01t0304050-01
Chr01	irgsp1_rep	exon	11264207	11264353	.	+	.	Parent=Os01t0304050-01
Chr01	irgsp1_rep	exon	11266018	11266197	.	+	.	Parent=Os01t0304050-01
Chr01	irgsp1_rep	mRNA	11254144	11260516	.	-	.	ID=Os01t0304100-00;Name=Os01t0304100-00;Locus_id=Os01g0304100;Oryzabase Gene Symbol Synonym(s)=Os CCC2%2C OsCCC2%2C OsLAT8;Oryzabase Gene Name Synonym(s)=cation-Cl- cotransporter 2%2C cation-chloride cotransporter 2;Note=Similar to Cation chloride cotransporter.;Transcript_evidence=ab initio prediction;ORF_evidence=D2U833 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020);InterPro=Amino acid permease domain (IPR004841);Oryzabase=14199;TENOR=Os01t0304100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	11260497	11260516	.	-	0	Parent=Os01t0304100-00
Chr01	irgsp1_rep	CDS	11259690	11259804	.	-	1	Parent=Os01t0304100-00
Chr01	irgsp1_rep	CDS	11259358	11259458	.	-	0	Parent=Os01t0304100-00
Chr01	irgsp1_rep	CDS	11258755	11258816	.	-	1	Parent=Os01t0304100-00
Chr01	irgsp1_rep	CDS	11257637	11257885	.	-	2	Parent=Os01t0304100-00
Chr01	irgsp1_rep	CDS	11257456	11257549	.	-	2	Parent=Os01t0304100-00
Chr01	irgsp1_rep	CDS	11257119	11257313	.	-	1	Parent=Os01t0304100-00
Chr01	irgsp1_rep	CDS	11256058	11256301	.	-	1	Parent=Os01t0304100-00
Chr01	irgsp1_rep	CDS	11255901	11255965	.	-	0	Parent=Os01t0304100-00
Chr01	irgsp1_rep	CDS	11255322	11255407	.	-	1	Parent=Os01t0304100-00
Chr01	irgsp1_rep	CDS	11254144	11255237	.	-	2	Parent=Os01t0304100-00
Chr01	irgsp1_rep	mRNA	11269325	11273164	.	-	.	ID=Os01t0304200-00;Name=Os01t0304200-00;Locus_id=Os01g0304200;Note=Similar to Transcription factor PCF7.;Transcript_evidence=AK361748 (DDBJ);ORF_evidence=Q8LT05 (UniProt);TENOR=Os01t0304200-00
Chr01	irgsp1_rep	five_prime_UTR	11272812	11273164	.	-	.	Parent=Os01t0304200-00
Chr01	irgsp1_rep	five_prime_UTR	11269645	11269650	.	-	.	Parent=Os01t0304200-00
Chr01	irgsp1_rep	CDS	11269471	11269644	.	-	0	Parent=Os01t0304200-00
Chr01	irgsp1_rep	three_prime_UTR	11269325	11269470	.	-	.	Parent=Os01t0304200-00
Chr01	irgsp1_rep	mRNA	11272159	11277795	.	+	.	ID=Os01t0304300-01;Name=Os01t0304300-01;Locus_id=Os01g0304300;Note=Similar to predicted protein.;Transcript_evidence=AK242039 (DDBJ%2C Best hit);ORF_evidence=Q9LNM9 (UniProt);InterPro=Protein of unknown function DUF616 (IPR006852);NIAS_FLcDNA=J075118M20;TENOR=Os01t0304300-01;KEGG=Os01t0304300-01
Chr01	irgsp1_rep	five_prime_UTR	11272159	11272943	.	+	.	Parent=Os01t0304300-01
Chr01	irgsp1_rep	CDS	11272944	11273217	.	+	0	Parent=Os01t0304300-01
Chr01	irgsp1_rep	CDS	11274773	11275069	.	+	2	Parent=Os01t0304300-01
Chr01	irgsp1_rep	CDS	11275150	11275363	.	+	2	Parent=Os01t0304300-01
Chr01	irgsp1_rep	CDS	11275487	11275596	.	+	1	Parent=Os01t0304300-01
Chr01	irgsp1_rep	CDS	11275670	11275869	.	+	2	Parent=Os01t0304300-01
Chr01	irgsp1_rep	CDS	11276484	11276587	.	+	0	Parent=Os01t0304300-01
Chr01	irgsp1_rep	CDS	11276792	11276979	.	+	1	Parent=Os01t0304300-01
Chr01	irgsp1_rep	CDS	11277053	11277252	.	+	2	Parent=Os01t0304300-01
Chr01	irgsp1_rep	CDS	11277387	11277617	.	+	0	Parent=Os01t0304300-01
Chr01	irgsp1_rep	three_prime_UTR	11277618	11277795	.	+	.	Parent=Os01t0304300-01
Chr01	irgsp1_rep	mRNA	11283364	11284127	.	+	.	ID=Os01t0304400-00;Name=Os01t0304400-00;Locus_id=Os01g0304400;Note=Conserved hypothetical protein.;Transcript_evidence=CT834995 (DDBJ%2C Best hit);ORF_evidence=NP_001042839.1 (RefSeq);TENOR=Os01t0304400-00;KEGG=Os01t0304400-00
Chr01	irgsp1_rep	five_prime_UTR	11283364	11283445	.	+	.	Parent=Os01t0304400-00
Chr01	irgsp1_rep	CDS	11283446	11283940	.	+	0	Parent=Os01t0304400-00
Chr01	irgsp1_rep	three_prime_UTR	11283941	11284127	.	+	.	Parent=Os01t0304400-00
Chr01	irgsp1_rep	mRNA	11299784	11307932	.	-	.	ID=Os01t0304500-00;Name=Os01t0304500-00;Locus_id=Os01g0304500;Note=Hypothetical conserved gene.;Transcript_evidence=CT837771 (DDBJ%2C Secondary hit);ORF_evidence=NP_001044440.2 (RefSeq);InterPro=Protein of unknown function DUF3778 (IPR022256);TENOR=Os01t0304500-00;KEGG=Os01t0304500-00
Chr01	irgsp1_rep	five_prime_UTR	11307815	11307932	.	-	.	Parent=Os01t0304500-00
Chr01	irgsp1_rep	CDS	11307757	11307814	.	-	0	Parent=Os01t0304500-00
Chr01	irgsp1_rep	CDS	11307154	11307187	.	-	2	Parent=Os01t0304500-00
Chr01	irgsp1_rep	CDS	11299938	11300354	.	-	1	Parent=Os01t0304500-00
Chr01	irgsp1_rep	CDS	11299816	11299924	.	-	1	Parent=Os01t0304500-00
Chr01	irgsp1_rep	three_prime_UTR	11299784	11299815	.	-	.	Parent=Os01t0304500-00
Chr01	irgsp1_rep	mRNA	11316720	11320061	.	+	.	ID=Os01t0305200-01;Name=Os01t0305200-01;Locus_id=Os01g0305200;Note=Lg106-like family protein.;Transcript_evidence=AK062385 (DDBJ%2C Best hit);ORF_evidence=NP_001151669.1 (RefSeq);InterPro=Endosulphine (IPR006760);NIAS_FLcDNA=001-102-C01;Expression=AK062385;TENOR=Os01t0305200-01;KEGG=Os01t0305200-01
Chr01	irgsp1_rep	five_prime_UTR	11316720	11316883	.	+	.	Parent=Os01t0305200-01
Chr01	irgsp1_rep	CDS	11316884	11316931	.	+	0	Parent=Os01t0305200-01
Chr01	irgsp1_rep	CDS	11318850	11318906	.	+	0	Parent=Os01t0305200-01
Chr01	irgsp1_rep	CDS	11319040	11319087	.	+	0	Parent=Os01t0305200-01
Chr01	irgsp1_rep	CDS	11319217	11319273	.	+	0	Parent=Os01t0305200-01
Chr01	irgsp1_rep	CDS	11319711	11319773	.	+	0	Parent=Os01t0305200-01
Chr01	irgsp1_rep	three_prime_UTR	11319774	11319814	.	+	.	Parent=Os01t0305200-01
Chr01	irgsp1_rep	three_prime_UTR	11319928	11320061	.	+	.	Parent=Os01t0305200-01
Chr01	irgsp1_rep	mRNA	11317192	11317678	.	+	.	ID=Os01t0305300-01;Name=Os01t0305300-01;Locus_id=Os01g0305300;Note=Non-protein coding transcript.;Transcript_evidence=AK062613 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-105-A11;TENOR=Os01t0305300-01
Chr01	irgsp1_rep	exon	11317192	11317678	.	+	.	Parent=Os01t0305300-01
Chr01	irgsp1_rep	mRNA	11350507	11356863	.	+	.	ID=Os01t0305900-01;Name=Os01t0305900-01;Locus_id=Os01g0305900;Note=Similar to R2R3 Myb transcription factor MYB-IF35.;Transcript_evidence=AK288699 (DDBJ%2C Best hit);ORF_evidence=NP_001105092.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J090061C22;TENOR=Os01t0305900-01;KEGG=Os01t0305900-01
Chr01	irgsp1_rep	five_prime_UTR	11350507	11350609	.	+	.	Parent=Os01t0305900-01
Chr01	irgsp1_rep	CDS	11350610	11350872	.	+	0	Parent=Os01t0305900-01
Chr01	irgsp1_rep	CDS	11355933	11356623	.	+	1	Parent=Os01t0305900-01
Chr01	irgsp1_rep	three_prime_UTR	11356624	11356863	.	+	.	Parent=Os01t0305900-01
Chr01	irgsp1_rep	mRNA	11364355	11365344	.	-	.	ID=Os01t0306100-01;Name=Os01t0306100-01;Locus_id=Os01g0306100;Note=Plant specific eukaryotic initiation factor 4B family protein.;Transcript_evidence=AK111041 (DDBJ%2C Best hit);ORF_evidence=Q657T9 (UniProt);InterPro=Plant specific eukaryotic initiation factor 4B (IPR010433);NIAS_FLcDNA=002-175-B04;Expression=AK111041;TENOR=Os01t0306100-01;KEGG=Os01t0306100-01
Chr01	irgsp1_rep	five_prime_UTR	11365336	11365344	.	-	.	Parent=Os01t0306100-01
Chr01	irgsp1_rep	CDS	11365034	11365335	.	-	0	Parent=Os01t0306100-01
Chr01	irgsp1_rep	CDS	11364534	11364963	.	-	1	Parent=Os01t0306100-01
Chr01	irgsp1_rep	three_prime_UTR	11364355	11364533	.	-	.	Parent=Os01t0306100-01
Chr01	irgsp1_rep	mRNA	11366633	11367460	.	-	.	ID=Os01t0306200-01;Name=Os01t0306200-01;Locus_id=Os01g0306200;Note=Protein of unknown function DUF3511 domain containing protein.;Transcript_evidence=AK071422 (DDBJ%2C Best hit);ORF_evidence=A2WNZ1 (UniProt);InterPro=Protein of unknown function DUF3511 (IPR021899);NIAS_FLcDNA=J023094M01;Expression=AK071422;TENOR=Os01t0306200-01;KEGG=Os01t0306200-01
Chr01	irgsp1_rep	five_prime_UTR	11367265	11367460	.	-	.	Parent=Os01t0306200-01
Chr01	irgsp1_rep	CDS	11367016	11367264	.	-	0	Parent=Os01t0306200-01
Chr01	irgsp1_rep	three_prime_UTR	11366633	11367015	.	-	.	Parent=Os01t0306200-01
Chr01	irgsp1_rep	mRNA	11378620	11380071	.	+	.	ID=Os01t0306400-01;Name=Os01t0306400-01;Locus_id=Os01g0306400;RAP-DB Gene Symbol Synonym(s)=OsDOG1L-3;RAP-DB Gene Name Synonym(s)=DELAY OF GERMINATION 1-like-3%2C DOG1-like-3;Oryzabase Gene Symbol Synonym(s)=OsDOG1L-1;Oryzabase Gene Name Synonym(s)=OsDOG1-like-1;Note=Homolog of Arabidopsis DOG1%2C Regulation of seed dormancy;Transcript_evidence=AK287785;ORF_evidence=Q0JNB9;GO=Biological Process: transcription%2C DNA-templated (GO:0006351),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Transcription factor TGA like domain (IPR025422);NIAS_FLcDNA=J065171M21;Manual Curation=August 18%2C 2020;Literature_PMID=32771171;Oryzabase=14285;TENOR=Os01t0306400-01;KEGG=Os01t0306400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	11378620	11378987	.	+	.	Parent=Os01t0306400-01
Chr01	irgsp1_rep	CDS	11378988	11379725	.	+	0	Parent=Os01t0306400-01
Chr01	irgsp1_rep	three_prime_UTR	11379726	11380071	.	+	.	Parent=Os01t0306400-01
Chr01	irgsp1_rep	mRNA	11412154	11421047	.	+	.	ID=Os01t0306800-01;Name=Os01t0306800-01;Locus_id=Os01g0306800;Note=Conserved hypothetical protein.;Transcript_evidence=AK099426 (DDBJ%2C Best hit);ORF_evidence=B9EVR9 (UniProt);NIAS_FLcDNA=J013010N16;Expression=AK099426;TENOR=Os01t0306800-01;KEGG=Os01t0306800-01
Chr01	irgsp1_rep	five_prime_UTR	11412154	11412268	.	+	.	Parent=Os01t0306800-01
Chr01	irgsp1_rep	CDS	11412269	11412411	.	+	0	Parent=Os01t0306800-01
Chr01	irgsp1_rep	CDS	11412832	11412938	.	+	1	Parent=Os01t0306800-01
Chr01	irgsp1_rep	CDS	11416436	11416710	.	+	2	Parent=Os01t0306800-01
Chr01	irgsp1_rep	CDS	11416938	11417103	.	+	0	Parent=Os01t0306800-01
Chr01	irgsp1_rep	CDS	11417605	11417846	.	+	2	Parent=Os01t0306800-01
Chr01	irgsp1_rep	CDS	11419498	11419685	.	+	0	Parent=Os01t0306800-01
Chr01	irgsp1_rep	CDS	11420497	11420713	.	+	1	Parent=Os01t0306800-01
Chr01	irgsp1_rep	three_prime_UTR	11420714	11421047	.	+	.	Parent=Os01t0306800-01
Chr01	irgsp1_rep	mRNA	11412176	11420982	.	+	.	ID=Os01t0306800-02;Name=Os01t0306800-02;Locus_id=Os01g0306800;Note=Hypothetical conserved gene.;Transcript_evidence=AK059447 (DDBJ%2C Best hit);ORF_evidence=C8TFH0 (UniProt);NIAS_FLcDNA=001-028-A08;Expression=AK059447;TENOR=Os01t0306800-02;KEGG=Os01t0306800-02
Chr01	irgsp1_rep	five_prime_UTR	11412176	11412268	.	+	.	Parent=Os01t0306800-02
Chr01	irgsp1_rep	CDS	11412269	11412411	.	+	0	Parent=Os01t0306800-02
Chr01	irgsp1_rep	CDS	11412832	11412938	.	+	1	Parent=Os01t0306800-02
Chr01	irgsp1_rep	CDS	11416436	11416710	.	+	2	Parent=Os01t0306800-02
Chr01	irgsp1_rep	CDS	11416938	11417103	.	+	0	Parent=Os01t0306800-02
Chr01	irgsp1_rep	CDS	11417605	11417751	.	+	2	Parent=Os01t0306800-02
Chr01	irgsp1_rep	CDS	11419597	11419607	.	+	2	Parent=Os01t0306800-02
Chr01	irgsp1_rep	three_prime_UTR	11419608	11419685	.	+	.	Parent=Os01t0306800-02
Chr01	irgsp1_rep	three_prime_UTR	11420497	11420982	.	+	.	Parent=Os01t0306800-02
Chr01	irgsp1_rep	mRNA	11426447	11430996	.	-	.	ID=Os01t0306900-01;Name=Os01t0306900-01;Locus_id=Os01g0306900;Note=Protein of unknown function DUF789 family protein.;Transcript_evidence=AK107306 (DDBJ%2C Best hit);ORF_evidence=B9EVS0 (UniProt);InterPro=Protein of unknown function DUF789 (IPR008507);NIAS_FLcDNA=002-126-D02;Expression=AK107306;TENOR=Os01t0306900-01;KEGG=Os01t0306900-01
Chr01	irgsp1_rep	five_prime_UTR	11430861	11430996	.	-	.	Parent=Os01t0306900-01
Chr01	irgsp1_rep	CDS	11430630	11430860	.	-	0	Parent=Os01t0306900-01
Chr01	irgsp1_rep	CDS	11430309	11430517	.	-	0	Parent=Os01t0306900-01
Chr01	irgsp1_rep	CDS	11427566	11427782	.	-	1	Parent=Os01t0306900-01
Chr01	irgsp1_rep	CDS	11427385	11427470	.	-	0	Parent=Os01t0306900-01
Chr01	irgsp1_rep	CDS	11427219	11427310	.	-	1	Parent=Os01t0306900-01
Chr01	irgsp1_rep	CDS	11426828	11427066	.	-	2	Parent=Os01t0306900-01
Chr01	irgsp1_rep	three_prime_UTR	11426447	11426827	.	-	.	Parent=Os01t0306900-01
Chr01	irgsp1_rep	mRNA	11458956	11463442	.	-	.	ID=Os01t0307500-01;Name=Os01t0307500-01;Locus_id=Os01g0307500;RAP-DB Gene Symbol Synonym(s)=SKC1%2C OsHKT1%3B5;RAP-DB Gene Name Synonym(s)=high-affinity K<sup>+</sup> transporter 1%3B5;CGSNL Gene Symbol=HKT8;CGSNL Gene Name=HIGH-AFFINITY K+ TRANSPORTER 8;Oryzabase Gene Symbol Synonym(s)=OsHKT8%2C Os-HKT1%3B5%2C OsHKT1%3B5%2C HKT1%3B5%2C SKC1%2C qSKC-1(t)%2C OsSKC1;Oryzabase Gene Name Synonym(s)=shoot K+ concentration (QTL)-1(t);Note=Na<sup>+</sup> transporter%2C A member of  HKT (high-affinity K<sup>+</sup> transporter)-type transporters%2C Regulation of K<sup>+</sup>/Na<sup>+</sup> homeostasis%2C Salt tolerance;Transcript_evidence=AK108663,DQ148410 (Nona Bokra);ORF_evidence=Q0JNB6;GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Molecular Function: cation transmembrane transporter activity (GO:0008324);InterPro=Cation transporter (IPR003445);NIAS_FLcDNA=002-148-F10;Manual Curation=May 31%2C 2018;Literature_PMID=28488420,16155566;Oryzabase=9022;Expression=AK108663;TENOR=Os01t0307500-01;KEGG=Os01t0307500-01;Subcellular location=plasma membrane (GO:0005886)
Chr01	irgsp1_rep	five_prime_UTR	11463276	11463442	.	-	.	Parent=Os01t0307500-01
Chr01	irgsp1_rep	CDS	11462041	11463275	.	-	0	Parent=Os01t0307500-01
Chr01	irgsp1_rep	CDS	11460163	11460393	.	-	1	Parent=Os01t0307500-01
Chr01	irgsp1_rep	CDS	11459287	11459485	.	-	1	Parent=Os01t0307500-01
Chr01	irgsp1_rep	three_prime_UTR	11458956	11459286	.	-	.	Parent=Os01t0307500-01
Chr01	irgsp1_rep	mRNA	11494771	11496222	.	-	.	ID=Os01t0307562-00;Name=Os01t0307562-00;Locus_id=Os01g0307562;Note=Similar to JD1.;Transcript_evidence=BT064998 (DDBJ);ORF_evidence=NP_001151069.1 (RefSeq);TENOR=Os01t0307562-00
Chr01	irgsp1_rep	CDS	11494771	11496222	.	-	0	Parent=Os01t0307562-00
Chr01	irgsp1_rep	mRNA	11502003	11504425	.	-	.	ID=Os01t0307624-01;Name=Os01t0307624-01;Locus_id=Os01g0307624;Note=Conserved hypothetical protein.;Transcript_evidence=AK288437 (DDBJ%2C Best hit);ORF_evidence=Q6ATH5 (UniProt);NIAS_FLcDNA=J090034B12;TENOR=Os01t0307624-01
Chr01	irgsp1_rep	five_prime_UTR	11503435	11504425	.	-	.	Parent=Os01t0307624-01
Chr01	irgsp1_rep	CDS	11503279	11503434	.	-	0	Parent=Os01t0307624-01
Chr01	irgsp1_rep	three_prime_UTR	11502003	11503278	.	-	.	Parent=Os01t0307624-01
Chr01	irgsp1_rep	mRNA	11505079	11506118	.	-	.	ID=Os01t0307686-00;Name=Os01t0307686-00;Locus_id=Os01g0307686;Note=Similar to embryonic abundant protein-like.;Transcript_evidence=BT087976 (DDBJ);ORF_evidence=NP_001151125.1 (RefSeq);TENOR=Os01t0307686-00
Chr01	irgsp1_rep	five_prime_UTR	11506104	11506118	.	-	.	Parent=Os01t0307686-00
Chr01	irgsp1_rep	CDS	11505930	11506103	.	-	0	Parent=Os01t0307686-00
Chr01	irgsp1_rep	CDS	11505130	11505822	.	-	0	Parent=Os01t0307686-00
Chr01	irgsp1_rep	three_prime_UTR	11505079	11505129	.	-	.	Parent=Os01t0307686-00
Chr01	irgsp1_rep	mRNA	11515321	11515989	.	+	.	ID=Os01t0307750-00;Name=Os01t0307750-00;Locus_id=Os01g0307750;Note=Hypothetical gene.;Transcript_evidence=CT834932 (DDBJ%2C Best hit);ORF_evidence=GeneMark;TENOR=Os01t0307750-00;KEGG=Os01t0307750-00
Chr01	irgsp1_rep	five_prime_UTR	11515321	11515322	.	+	.	Parent=Os01t0307750-00
Chr01	irgsp1_rep	CDS	11515323	11515368	.	+	0	Parent=Os01t0307750-00
Chr01	irgsp1_rep	CDS	11515761	11515954	.	+	2	Parent=Os01t0307750-00
Chr01	irgsp1_rep	three_prime_UTR	11515955	11515989	.	+	.	Parent=Os01t0307750-00
Chr01	irgsp1_rep	mRNA	11526561	11530094	.	-	.	ID=Os01t0308200-01;Name=Os01t0308200-01;Locus_id=Os01g0308200;Note=Hypothetical protein.;Transcript_evidence=AK243191 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J100039K11;TENOR=Os01t0308200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	11526905	11530094	.	-	.	Parent=Os01t0308200-01
Chr01	irgsp1_rep	CDS	11526566	11526904	.	-	0	Parent=Os01t0308200-01
Chr01	irgsp1_rep	three_prime_UTR	11526561	11526565	.	-	.	Parent=Os01t0308200-01
Chr01	irgsp1_rep	mRNA	11526387	11528207	.	-	.	ID=Os01t0308200-02;Name=Os01t0308200-02;Locus_id=Os01g0308200;Note=Hypothetical protein.;Transcript_evidence=AK110806 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-171-E12;TENOR=Os01t0308200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	11526905	11528207	.	-	.	Parent=Os01t0308200-02
Chr01	irgsp1_rep	CDS	11526566	11526904	.	-	0	Parent=Os01t0308200-02
Chr01	irgsp1_rep	three_prime_UTR	11526387	11526565	.	-	.	Parent=Os01t0308200-02
Chr01	irgsp1_rep	mRNA	11526651	11529893	.	+	.	ID=Os01t0308300-00;Name=Os01t0308300-00;Locus_id=Os01g0308300;Note=NB-ARC domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001172295.1 (RefSeq);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);Oryzabase=20236;TENOR=Os01t0308300-00;KEGG=Os01t0308300-00
Chr01	irgsp1_rep	CDS	11526651	11529893	.	+	0	Parent=Os01t0308300-00
Chr01	irgsp1_rep	mRNA	11544302	11545430	.	-	.	ID=Os01t0308600-00;Name=Os01t0308600-00;Locus_id=Os01g0308600;Note=Conserved hypothetical protein.;Transcript_evidence=CT834965 (DDBJ%2C Best hit);ORF_evidence=NP_001042850.1 (RefSeq);TENOR=Os01t0308600-00;KEGG=Os01t0308600-00
Chr01	irgsp1_rep	five_prime_UTR	11545295	11545430	.	-	.	Parent=Os01t0308600-00
Chr01	irgsp1_rep	CDS	11544782	11545294	.	-	0	Parent=Os01t0308600-00
Chr01	irgsp1_rep	three_prime_UTR	11544302	11544781	.	-	.	Parent=Os01t0308600-00
Chr01	irgsp1_rep	mRNA	11549976	11550801	.	-	.	ID=Os01t0308700-00;Name=Os01t0308700-00;Locus_id=Os01g0308700;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);InterPro=Ribonuclease H1%2C N-terminal (IPR011320);TENOR=Os01t0308700-00
Chr01	irgsp1_rep	five_prime_UTR	11550798	11550801	.	-	.	Parent=Os01t0308700-00
Chr01	irgsp1_rep	CDS	11549976	11550797	.	-	0	Parent=Os01t0308700-00
Chr01	irgsp1_rep	mRNA	11585607	11586480	.	+	.	ID=Os01t0309100-01;Name=Os01t0309100-01;Locus_id=Os01g0309100;Oryzabase Gene Name Synonym(s)=Extensin family protein;Note=Similar to anther-specific protein SF18.;Transcript_evidence=AK102492 (DDBJ%2C Best hit);ORF_evidence=NP_001150014.1 (RefSeq);NIAS_FLcDNA=J033094P20;Oryzabase=21937;Expression=AK102492;TENOR=Os01t0309100-01;KEGG=Os01t0309100-01
Chr01	irgsp1_rep	five_prime_UTR	11585607	11585665	.	+	.	Parent=Os01t0309100-01
Chr01	irgsp1_rep	CDS	11585666	11586244	.	+	0	Parent=Os01t0309100-01
Chr01	irgsp1_rep	three_prime_UTR	11586245	11586480	.	+	.	Parent=Os01t0309100-01
Chr01	irgsp1_rep	mRNA	11607650	11608129	.	-	.	ID=Os01t0309451-01;Name=Os01t0309451-01;Locus_id=Os01g0309451;Note=Hypothetical gene.;Transcript_evidence=AK107992 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-135-F09;TENOR=Os01t0309451-01
Chr01	irgsp1_rep	five_prime_UTR	11608128	11608129	.	-	.	Parent=Os01t0309451-01
Chr01	irgsp1_rep	CDS	11607747	11608127	.	-	0	Parent=Os01t0309451-01
Chr01	irgsp1_rep	three_prime_UTR	11607650	11607746	.	-	.	Parent=Os01t0309451-01
Chr01	irgsp1_rep	mRNA	11611069	11612597	.	+	.	ID=Os01t0309800-01;Name=Os01t0309800-01;Locus_id=Os01g0309800;CGSNL Gene Symbol=HMP2;CGSNL Gene Name=HEAVY METAL-ASSOCIATED PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsHMP2%2C OsHMP02;Oryzabase Gene Name Synonym(s)=Heavy metal-associated protein 2;Note=Similar to Hydrogenase expression/formation protein hypB.;Transcript_evidence=AK110758 (DDBJ%2C Best hit);ORF_evidence=A2WP06 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);NIAS_FLcDNA=002-170-H03;Oryzabase=23528;Expression=AK110758;TENOR=Os01t0309800-01;KEGG=Os01t0309800-01
Chr01	irgsp1_rep	five_prime_UTR	11611069	11611181	.	+	.	Parent=Os01t0309800-01
Chr01	irgsp1_rep	CDS	11611182	11611199	.	+	0	Parent=Os01t0309800-01
Chr01	irgsp1_rep	CDS	11611322	11611406	.	+	0	Parent=Os01t0309800-01
Chr01	irgsp1_rep	CDS	11611627	11612270	.	+	2	Parent=Os01t0309800-01
Chr01	irgsp1_rep	three_prime_UTR	11612271	11612597	.	+	.	Parent=Os01t0309800-01
Chr01	irgsp1_rep	mRNA	11618335	11622522	.	+	.	ID=Os01t0309900-01;Name=Os01t0309900-01;Locus_id=Os01g0309900;Note=Lipase%2C class 3 family protein.;Transcript_evidence=AK100627 (DDBJ%2C Best hit);ORF_evidence=NP_567482.2 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: lipid catabolic process (GO:0016042),Molecular Function: carboxylesterase activity (GO:0004091),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921),Mono-/di-acylglycerol lipase%2C N-terminal (IPR005592);NIAS_FLcDNA=J023108O19;Expression=AK100627;TENOR=Os01t0309900-01;KEGG=Os01t0309900-01
Chr01	irgsp1_rep	five_prime_UTR	11618335	11618499	.	+	.	Parent=Os01t0309900-01
Chr01	irgsp1_rep	CDS	11618500	11618787	.	+	0	Parent=Os01t0309900-01
Chr01	irgsp1_rep	CDS	11619607	11619804	.	+	0	Parent=Os01t0309900-01
Chr01	irgsp1_rep	CDS	11619930	11620202	.	+	0	Parent=Os01t0309900-01
Chr01	irgsp1_rep	CDS	11620614	11620716	.	+	0	Parent=Os01t0309900-01
Chr01	irgsp1_rep	CDS	11620787	11620905	.	+	2	Parent=Os01t0309900-01
Chr01	irgsp1_rep	CDS	11621159	11621335	.	+	0	Parent=Os01t0309900-01
Chr01	irgsp1_rep	CDS	11621564	11622313	.	+	0	Parent=Os01t0309900-01
Chr01	irgsp1_rep	three_prime_UTR	11622314	11622522	.	+	.	Parent=Os01t0309900-01
Chr01	irgsp1_rep	mRNA	11619605	11620204	.	-	.	ID=Os01t0309966-00;Name=Os01t0309966-00;Locus_id=Os01g0309966;Note=Hypothetical protein.;Transcript_evidence=BT084199 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0309966-00
Chr01	irgsp1_rep	five_prime_UTR	11620021	11620204	.	-	.	Parent=Os01t0309966-00
Chr01	irgsp1_rep	CDS	11619918	11620020	.	-	0	Parent=Os01t0309966-00
Chr01	irgsp1_rep	CDS	11619605	11619793	.	-	2	Parent=Os01t0309966-00
Chr01	irgsp1_rep	mRNA	11624254	11624835	.	-	.	ID=Os01t0310032-00;Name=Os01t0310032-00;Locus_id=Os01g0310032;Note=Similar to Cold-regulated protein.;Transcript_evidence=AB097412 (DDBJ);ORF_evidence=Q9FSI8 (UniProt);TENOR=Os01t0310032-00
Chr01	irgsp1_rep	five_prime_UTR	11624681	11624835	.	-	.	Parent=Os01t0310032-00
Chr01	irgsp1_rep	CDS	11624462	11624680	.	-	0	Parent=Os01t0310032-00
Chr01	irgsp1_rep	CDS	11624254	11624373	.	-	0	Parent=Os01t0310032-00
Chr01	irgsp1_rep	mRNA	11625271	11637356	.	-	.	ID=Os01t0310100-01;Name=Os01t0310100-01;Locus_id=Os01g0310100;CGSNL Gene Symbol=PLDzeta2;CGSNL Gene Name=PHOSPHOLIPASE D zeta 2;Oryzabase Gene Symbol Synonym(s)=OsPLDzeta2%2C OsPLDrho2;Oryzabase Gene Name Synonym(s)=phospholipase D rho 2;Note=Similar to PLDP1 (PHOSPHOLIPASE D P1)%3B phospholipase D.;Transcript_evidence=AK120868 (DDBJ%2C Best hit);ORF_evidence=NP_188302.2 (RefSeq);InterPro=Phospholipase D (IPR015679);NIAS_FLcDNA=J023025P20;Oryzabase=8702;TENOR=Os01t0310100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	11637161	11637356	.	-	.	Parent=Os01t0310100-01
Chr01	irgsp1_rep	CDS	11636894	11637160	.	-	0	Parent=Os01t0310100-01
Chr01	irgsp1_rep	CDS	11635887	11635901	.	-	0	Parent=Os01t0310100-01
Chr01	irgsp1_rep	three_prime_UTR	11635805	11635886	.	-	.	Parent=Os01t0310100-01
Chr01	irgsp1_rep	three_prime_UTR	11635197	11635315	.	-	.	Parent=Os01t0310100-01
Chr01	irgsp1_rep	three_prime_UTR	11634889	11635030	.	-	.	Parent=Os01t0310100-01
Chr01	irgsp1_rep	three_prime_UTR	11634572	11634739	.	-	.	Parent=Os01t0310100-01
Chr01	irgsp1_rep	three_prime_UTR	11634305	11634478	.	-	.	Parent=Os01t0310100-01
Chr01	irgsp1_rep	three_prime_UTR	11632886	11633125	.	-	.	Parent=Os01t0310100-01
Chr01	irgsp1_rep	three_prime_UTR	11631496	11632798	.	-	.	Parent=Os01t0310100-01
Chr01	irgsp1_rep	three_prime_UTR	11631269	11631418	.	-	.	Parent=Os01t0310100-01
Chr01	irgsp1_rep	three_prime_UTR	11630968	11631124	.	-	.	Parent=Os01t0310100-01
Chr01	irgsp1_rep	three_prime_UTR	11630362	11630901	.	-	.	Parent=Os01t0310100-01
Chr01	irgsp1_rep	three_prime_UTR	11628442	11628552	.	-	.	Parent=Os01t0310100-01
Chr01	irgsp1_rep	three_prime_UTR	11628136	11628282	.	-	.	Parent=Os01t0310100-01
Chr01	irgsp1_rep	three_prime_UTR	11627864	11628061	.	-	.	Parent=Os01t0310100-01
Chr01	irgsp1_rep	three_prime_UTR	11627628	11627729	.	-	.	Parent=Os01t0310100-01
Chr01	irgsp1_rep	three_prime_UTR	11626862	11626993	.	-	.	Parent=Os01t0310100-01
Chr01	irgsp1_rep	three_prime_UTR	11626273	11626338	.	-	.	Parent=Os01t0310100-01
Chr01	irgsp1_rep	three_prime_UTR	11626000	11626061	.	-	.	Parent=Os01t0310100-01
Chr01	irgsp1_rep	three_prime_UTR	11625271	11625907	.	-	.	Parent=Os01t0310100-01
Chr01	irgsp1_rep	mRNA	11655138	11666398	.	+	.	ID=Os01t0310500-01;Name=Os01t0310500-01;Locus_id=Os01g0310500;CGSNL Gene Symbol=RLCK31;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 31;Oryzabase Gene Symbol Synonym(s)=OsRLCK31;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 31;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK289146 (DDBJ%2C Best hit);ORF_evidence=NP_001042855.2 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J090099K22;Oryzabase=18750;TENOR=Os01t0310500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	11655138	11655597	.	+	.	Parent=Os01t0310500-01
Chr01	irgsp1_rep	five_prime_UTR	11655892	11655935	.	+	.	Parent=Os01t0310500-01
Chr01	irgsp1_rep	CDS	11655936	11657876	.	+	0	Parent=Os01t0310500-01
Chr01	irgsp1_rep	three_prime_UTR	11657877	11657957	.	+	.	Parent=Os01t0310500-01
Chr01	irgsp1_rep	three_prime_UTR	11659319	11659448	.	+	.	Parent=Os01t0310500-01
Chr01	irgsp1_rep	three_prime_UTR	11659585	11659867	.	+	.	Parent=Os01t0310500-01
Chr01	irgsp1_rep	three_prime_UTR	11659980	11660111	.	+	.	Parent=Os01t0310500-01
Chr01	irgsp1_rep	three_prime_UTR	11660191	11660277	.	+	.	Parent=Os01t0310500-01
Chr01	irgsp1_rep	three_prime_UTR	11663795	11663923	.	+	.	Parent=Os01t0310500-01
Chr01	irgsp1_rep	three_prime_UTR	11664027	11664066	.	+	.	Parent=Os01t0310500-01
Chr01	irgsp1_rep	three_prime_UTR	11664286	11664356	.	+	.	Parent=Os01t0310500-01
Chr01	irgsp1_rep	three_prime_UTR	11664433	11665732	.	+	.	Parent=Os01t0310500-01
Chr01	irgsp1_rep	three_prime_UTR	11665834	11666398	.	+	.	Parent=Os01t0310500-01
Chr01	irgsp1_rep	mRNA	11662723	11666347	.	+	.	ID=Os01t0310500-02;Name=Os01t0310500-02;Locus_id=Os01g0310500;CGSNL Gene Symbol=RLCK31;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 31;Oryzabase Gene Symbol Synonym(s)=OsRLCK31;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 31;Note=Conserved hypothetical protein.;Transcript_evidence=AK073535 (DDBJ%2C Best hit);ORF_evidence=Q7F0U6 (UniProt);NIAS_FLcDNA=J033041G18;Oryzabase=18750;Expression=AK073535;TENOR=Os01t0310500-02;KEGG=Os01t0310500-02
Chr01	irgsp1_rep	five_prime_UTR	11662723	11662910	.	+	.	Parent=Os01t0310500-02
Chr01	irgsp1_rep	CDS	11662911	11663074	.	+	0	Parent=Os01t0310500-02
Chr01	irgsp1_rep	CDS	11663795	11663923	.	+	1	Parent=Os01t0310500-02
Chr01	irgsp1_rep	CDS	11664027	11664066	.	+	1	Parent=Os01t0310500-02
Chr01	irgsp1_rep	CDS	11664286	11664312	.	+	0	Parent=Os01t0310500-02
Chr01	irgsp1_rep	three_prime_UTR	11664313	11664356	.	+	.	Parent=Os01t0310500-02
Chr01	irgsp1_rep	three_prime_UTR	11664443	11665732	.	+	.	Parent=Os01t0310500-02
Chr01	irgsp1_rep	three_prime_UTR	11665834	11666347	.	+	.	Parent=Os01t0310500-02
Chr01	irgsp1_rep	mRNA	11665735	11666894	.	-	.	ID=Os01t0310550-01;Name=Os01t0310550-01;Locus_id=Os01g0310550;Note=Non-protein coding transcript.;Transcript_evidence=AK099487 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013026F13;TENOR=Os01t0310550-01
Chr01	irgsp1_rep	exon	11665735	11666894	.	-	.	Parent=Os01t0310550-01
Chr01	irgsp1_rep	mRNA	11667261	11667683	.	-	.	ID=Os01t0310600-01;Name=Os01t0310600-01;Locus_id=Os01g0310600;Note=Non-protein coding transcript.;Transcript_evidence=AK110671 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-169-G03;TENOR=Os01t0310600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	exon	11667261	11667683	.	-	.	Parent=Os01t0310600-01
Chr01	irgsp1_rep	mRNA	11670153	11670582	.	+	.	ID=Os01t0310700-01;Name=Os01t0310700-01;Locus_id=Os01g0310700;Note=Non-protein coding transcript.;Transcript_evidence=AK120861 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023024H18;TENOR=Os01t0310700-01
Chr01	irgsp1_rep	exon	11670153	11670582	.	+	.	Parent=Os01t0310700-01
Chr01	irgsp1_rep	mRNA	11677483	11681874	.	+	.	ID=Os01t0310800-01;Name=Os01t0310800-01;Locus_id=Os01g0310800;CGSNL Gene Symbol=WAK4;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 4;Oryzabase Gene Symbol Synonym(s)=OsWAK4%2C OsRLCK32%2C RLCK32;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 32;Note=Similar to Pto kinase interactor 1.;Transcript_evidence=AK064374 (DDBJ%2C Best hit);ORF_evidence=B9EVS5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=002-108-D05;Oryzabase=6904;Expression=AK064374;TENOR=Os01t0310800-01;KEGG=Os01t0310800-01
Chr01	irgsp1_rep	five_prime_UTR	11677483	11677484	.	+	.	Parent=Os01t0310800-01
Chr01	irgsp1_rep	CDS	11677485	11679033	.	+	0	Parent=Os01t0310800-01
Chr01	irgsp1_rep	CDS	11680202	11680449	.	+	2	Parent=Os01t0310800-01
Chr01	irgsp1_rep	CDS	11680550	11680679	.	+	0	Parent=Os01t0310800-01
Chr01	irgsp1_rep	CDS	11680828	11681147	.	+	2	Parent=Os01t0310800-01
Chr01	irgsp1_rep	three_prime_UTR	11681148	11681349	.	+	.	Parent=Os01t0310800-01
Chr01	irgsp1_rep	three_prime_UTR	11681432	11681874	.	+	.	Parent=Os01t0310800-01
Chr01	irgsp1_rep	mRNA	11686442	11687191	.	+	.	ID=Os01t0311100-00;Name=Os01t0311100-00;Locus_id=Os01g0311100;Oryzabase Gene Symbol Synonym(s)=OsRFPH2-4;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPH2-4%2C RING-H2 protein 4;Note=Similar to RING-H2 finger protein ATL2L.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001167698.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);Oryzabase=11765;TENOR=Os01t0311100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	11686442	11687191	.	+	0	Parent=Os01t0311100-00
Chr01	irgsp1_rep	mRNA	11688361	11689046	.	-	.	ID=Os01t0311300-01;Name=Os01t0311300-01;Locus_id=Os01g0311300;Note=Similar to Sorbitol transporter.;Transcript_evidence=AK062341 (DDBJ%2C Best hit);ORF_evidence=NP_001151390.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transmembrane transporter activity (GO:0022857);InterPro=General substrate transporter (IPR005828);NIAS_FLcDNA=001-101-F02;Expression=AK062341;TENOR=Os01t0311300-01;KEGG=Os01t0311300-01
Chr01	irgsp1_rep	CDS	11688663	11689046	.	-	0	Parent=Os01t0311300-01
Chr01	irgsp1_rep	three_prime_UTR	11688361	11688662	.	-	.	Parent=Os01t0311300-01
Chr01	irgsp1_rep	mRNA	11690379	11690975	.	+	.	ID=Os01t0311400-00;Name=Os01t0311400-00;Locus_id=Os01g0311400;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001147702.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os01t0311400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	11690379	11690975	.	+	0	Parent=Os01t0311400-00
Chr01	irgsp1_rep	mRNA	11693812	11699838	.	+	.	ID=Os01t0311500-01;Name=Os01t0311500-01;Locus_id=Os01g0311500;Oryzabase Gene Symbol Synonym(s)=OsPHS1a%2C OsPP3;Oryzabase Gene Name Synonym(s)=Protein phosphatase 3;Note=Similar to PHS1 (PROPYZAMIDE-HYPERSENSITIVE 1)%3B phosphoprotein phosphatase/ protein tyrosine/serine/threonine phosphatase.;Transcript_evidence=AK103288 (DDBJ%2C Best hit);ORF_evidence=NP_001031933.1 (RefSeq);GO=Biological Process: protein dephosphorylation (GO:0006470),Biological Process: dephosphorylation (GO:0016311),Molecular Function: protein tyrosine phosphatase activity (GO:0004725),Molecular Function: protein tyrosine/serine/threonine phosphatase activity (GO:0008138),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773),Molecular Function: phosphatase activity (GO:0016791);InterPro=Dual specificity phosphatase%2C catalytic domain (IPR000340),Protein-tyrosine/Dual-specificity phosphatase (IPR000387),Phosphatidylinositol 3-/4-kinase%2C catalytic (IPR000403),Protein kinase-like domain (IPR011009),Actin-fragmin kinase%2C catalytic (IPR015275),Protein-tyrosine phosphatase%2C active site (IPR016130),Dual specificity phosphatase%2C subgroup%2C catalytic domain (IPR020422);NIAS_FLcDNA=J033124N21;Oryzabase=10265;TENOR=Os01t0311500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	11693812	11694149	.	+	.	Parent=Os01t0311500-01
Chr01	irgsp1_rep	CDS	11694150	11694221	.	+	0	Parent=Os01t0311500-01
Chr01	irgsp1_rep	CDS	11695113	11695151	.	+	0	Parent=Os01t0311500-01
Chr01	irgsp1_rep	CDS	11695290	11695462	.	+	0	Parent=Os01t0311500-01
Chr01	irgsp1_rep	CDS	11696189	11696405	.	+	1	Parent=Os01t0311500-01
Chr01	irgsp1_rep	CDS	11696639	11696809	.	+	0	Parent=Os01t0311500-01
Chr01	irgsp1_rep	CDS	11696902	11697062	.	+	0	Parent=Os01t0311500-01
Chr01	irgsp1_rep	CDS	11697146	11698190	.	+	1	Parent=Os01t0311500-01
Chr01	irgsp1_rep	CDS	11698441	11698587	.	+	0	Parent=Os01t0311500-01
Chr01	irgsp1_rep	CDS	11698668	11698895	.	+	0	Parent=Os01t0311500-01
Chr01	irgsp1_rep	CDS	11698984	11699141	.	+	0	Parent=Os01t0311500-01
Chr01	irgsp1_rep	CDS	11699245	11699614	.	+	1	Parent=Os01t0311500-01
Chr01	irgsp1_rep	three_prime_UTR	11699615	11699838	.	+	.	Parent=Os01t0311500-01
Chr01	irgsp1_rep	mRNA	11698118	11699832	.	+	.	ID=Os01t0311500-02;Name=Os01t0311500-02;Locus_id=Os01g0311500;Oryzabase Gene Symbol Synonym(s)=OsPHS1a%2C OsPP3;Oryzabase Gene Name Synonym(s)=Protein phosphatase 3;Note=Similar to predicted protein.;Transcript_evidence=AK062171 (DDBJ%2C Best hit);ORF_evidence=NP_001031933.1 (RefSeq);GO=Biological Process: protein dephosphorylation (GO:0006470),Biological Process: dephosphorylation (GO:0016311),Molecular Function: protein tyrosine phosphatase activity (GO:0004725),Molecular Function: protein tyrosine/serine/threonine phosphatase activity (GO:0008138),Molecular Function: phosphatase activity (GO:0016791);InterPro=Dual specificity phosphatase%2C catalytic domain (IPR000340),Protein-tyrosine/Dual-specificity phosphatase (IPR000387),Protein-tyrosine phosphatase%2C active site (IPR016130),Dual specificity phosphatase%2C subgroup%2C catalytic domain (IPR020422);NIAS_FLcDNA=001-046-C05;Oryzabase=10265;Expression=AK062171;TENOR=Os01t0311500-02;KEGG=Os01t0311500-02
Chr01	irgsp1_rep	five_prime_UTR	11698118	11698118	.	+	.	Parent=Os01t0311500-02
Chr01	irgsp1_rep	CDS	11698119	11698190	.	+	0	Parent=Os01t0311500-02
Chr01	irgsp1_rep	CDS	11698441	11698587	.	+	0	Parent=Os01t0311500-02
Chr01	irgsp1_rep	CDS	11698668	11698895	.	+	0	Parent=Os01t0311500-02
Chr01	irgsp1_rep	CDS	11698984	11699141	.	+	0	Parent=Os01t0311500-02
Chr01	irgsp1_rep	CDS	11699245	11699614	.	+	1	Parent=Os01t0311500-02
Chr01	irgsp1_rep	three_prime_UTR	11699615	11699832	.	+	.	Parent=Os01t0311500-02
Chr01	irgsp1_rep	mRNA	11703247	11704653	.	-	.	ID=Os01t0311600-01;Name=Os01t0311600-01;Locus_id=Os01g0311600;Note=Sulfotransferase family protein.;Transcript_evidence=AK105552 (DDBJ%2C Best hit);ORF_evidence=Q6ZXK7 (UniProt);GO=Molecular Function: sulfotransferase activity (GO:0008146);InterPro=Sulfotransferase domain (IPR000863);NIAS_FLcDNA=001-128-A12;Expression=AK105552;TENOR=Os01t0311600-01;KEGG=Os01t0311600-01
Chr01	irgsp1_rep	five_prime_UTR	11704582	11704653	.	-	.	Parent=Os01t0311600-01
Chr01	irgsp1_rep	CDS	11703541	11704581	.	-	0	Parent=Os01t0311600-01
Chr01	irgsp1_rep	three_prime_UTR	11703247	11703540	.	-	.	Parent=Os01t0311600-01
Chr01	irgsp1_rep	mRNA	11713650	11714674	.	+	.	ID=Os01t0311700-01;Name=Os01t0311700-01;Locus_id=Os01g0311700;Note=Pectinesterase inhibitor domain containing protein.;Transcript_evidence=AK072493 (DDBJ%2C Best hit);ORF_evidence=B5TQZ3 (UniProt);GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);NIAS_FLcDNA=J023132A06;Expression=AK072493;TENOR=Os01t0311700-01;KEGG=Os01t0311700-01
Chr01	irgsp1_rep	five_prime_UTR	11713650	11713727	.	+	.	Parent=Os01t0311700-01
Chr01	irgsp1_rep	CDS	11713728	11714074	.	+	0	Parent=Os01t0311700-01
Chr01	irgsp1_rep	CDS	11714199	11714442	.	+	1	Parent=Os01t0311700-01
Chr01	irgsp1_rep	three_prime_UTR	11714443	11714674	.	+	.	Parent=Os01t0311700-01
Chr01	irgsp1_rep	mRNA	11715268	11717784	.	-	.	ID=Os01t0311800-01;Name=Os01t0311800-01;Locus_id=Os01g0311800;CGSNL Gene Symbol=PME2;CGSNL Gene Name=PECTIN METHYLESTERASE 2;Oryzabase Gene Symbol Synonym(s)=OsPME2;Oryzabase Gene Name Synonym(s)=pectin methylesterase 2;Note=Similar to Pectin methylesterase 8 (Fragment).;Transcript_evidence=AK107006 (DDBJ%2C Best hit);ORF_evidence=A2WP19 (UniProt);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectinesterase inhibitor (IPR006501),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),Pectinesterase%2C active site (IPR018040);NIAS_FLcDNA=002-120-D07;Oryzabase=13166;Expression=AK107006;TENOR=Os01t0311800-01;KEGG=Os01t0311800-01
Chr01	irgsp1_rep	five_prime_UTR	11717654	11717784	.	-	.	Parent=Os01t0311800-01
Chr01	irgsp1_rep	CDS	11716678	11717653	.	-	0	Parent=Os01t0311800-01
Chr01	irgsp1_rep	CDS	11715550	11716247	.	-	2	Parent=Os01t0311800-01
Chr01	irgsp1_rep	three_prime_UTR	11715268	11715549	.	-	.	Parent=Os01t0311800-01
Chr01	irgsp1_rep	mRNA	11716329	11717780	.	-	.	ID=Os01t0311800-02;Name=Os01t0311800-02;Locus_id=Os01g0311800;CGSNL Gene Symbol=PME2;CGSNL Gene Name=PECTIN METHYLESTERASE 2;Oryzabase Gene Symbol Synonym(s)=OsPME2;Oryzabase Gene Name Synonym(s)=pectin methylesterase 2;Note=Similar to Pectinesterase.;Transcript_evidence=AK110846 (DDBJ%2C Best hit);ORF_evidence=A2ZSC3 (UniProt);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectinesterase inhibitor (IPR006501),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=002-172-B12;Oryzabase=13166;Expression=AK110846;TENOR=Os01t0311800-02;KEGG=Os01t0311800-02
Chr01	irgsp1_rep	five_prime_UTR	11717654	11717780	.	-	.	Parent=Os01t0311800-02
Chr01	irgsp1_rep	CDS	11716643	11717653	.	-	0	Parent=Os01t0311800-02
Chr01	irgsp1_rep	three_prime_UTR	11716329	11716642	.	-	.	Parent=Os01t0311800-02
Chr01	irgsp1_rep	mRNA	11741908	11750685	.	+	.	ID=Os01t0312500-01;Name=Os01t0312500-01;Locus_id=Os01g0312500;CGSNL Gene Symbol=PME3;CGSNL Gene Name=PECTIN METHYLESTERASE 3;Oryzabase Gene Symbol Synonym(s)=OsPME3;Oryzabase Gene Name Synonym(s)=pectin methylesterase 3;Note=Similar to Pectinesterase.;Transcript_evidence=AK105998 (DDBJ%2C Best hit);ORF_evidence=B9EVS6 (UniProt);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectinesterase inhibitor (IPR006501),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),Pectinesterase%2C active site (IPR018040);NIAS_FLcDNA=001-205-H08;Oryzabase=13167;TENOR=Os01t0312500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	11741908	11742502	.	+	0	Parent=Os01t0312500-01
Chr01	irgsp1_rep	CDS	11749793	11750484	.	+	2	Parent=Os01t0312500-01
Chr01	irgsp1_rep	three_prime_UTR	11750485	11750685	.	+	.	Parent=Os01t0312500-01
Chr01	irgsp1_rep	mRNA	11742340	11750448	.	-	.	ID=Os01t0312600-00;Name=Os01t0312600-00;Locus_id=Os01g0312600;Note=Hypothetical protein.;Transcript_evidence=EU943103 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0312600-00
Chr01	irgsp1_rep	CDS	11749765	11750448	.	-	0	Parent=Os01t0312600-00
Chr01	irgsp1_rep	three_prime_UTR	11749743	11749764	.	-	.	Parent=Os01t0312600-00
Chr01	irgsp1_rep	three_prime_UTR	11742340	11742517	.	-	.	Parent=Os01t0312600-00
Chr01	irgsp1_rep	mRNA	11756949	11759565	.	+	.	ID=Os01t0312800-01;Name=Os01t0312800-01;Locus_id=Os01g0312800;CGSNL Gene Symbol=GH9B2;CGSNL Gene Name=GLYCOSIDE HYDROLASE 9B2;Oryzabase Gene Symbol Synonym(s)=OsGH9B2;Oryzabase Gene Name Synonym(s)=glycoside hydrolase OsGH9B2%2C glycoside hydrolase 9B2;Note=Similar to CEL4%3DCELLULASE 4 (Fragment).;Transcript_evidence=AK106887 (DDBJ%2C Best hit);ORF_evidence=Q8LQ92 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 9 (IPR001701),Six-hairpin glycosidase-like (IPR008928),Six-hairpin glycosidase (IPR012341),Glycoside hydrolase%2C family 9%2C active site (IPR018221);NIAS_FLcDNA=002-118-F12;Oryzabase=11702;Expression=AK106887;TENOR=Os01t0312800-01;KEGG=Os01t0312800-01
Chr01	irgsp1_rep	five_prime_UTR	11756949	11757050	.	+	.	Parent=Os01t0312800-01
Chr01	irgsp1_rep	CDS	11757051	11757276	.	+	0	Parent=Os01t0312800-01
Chr01	irgsp1_rep	CDS	11757406	11757614	.	+	2	Parent=Os01t0312800-01
Chr01	irgsp1_rep	CDS	11757941	11758141	.	+	0	Parent=Os01t0312800-01
Chr01	irgsp1_rep	CDS	11758264	11758356	.	+	0	Parent=Os01t0312800-01
Chr01	irgsp1_rep	CDS	11758476	11759246	.	+	0	Parent=Os01t0312800-01
Chr01	irgsp1_rep	three_prime_UTR	11759247	11759565	.	+	.	Parent=Os01t0312800-01
Chr01	irgsp1_rep	mRNA	11757105	11759216	.	-	.	ID=Os01t0313050-00;Name=Os01t0313050-00;Locus_id=Os01g0313050;Note=Hypothetical protein.;Transcript_evidence=tplb0042g22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0313050-00
Chr01	irgsp1_rep	CDS	11758503	11759216	.	-	0	Parent=Os01t0313050-00
Chr01	irgsp1_rep	three_prime_UTR	11758390	11758502	.	-	.	Parent=Os01t0313050-00
Chr01	irgsp1_rep	three_prime_UTR	11757962	11758148	.	-	.	Parent=Os01t0313050-00
Chr01	irgsp1_rep	three_prime_UTR	11757414	11757634	.	-	.	Parent=Os01t0313050-00
Chr01	irgsp1_rep	three_prime_UTR	11757105	11757286	.	-	.	Parent=Os01t0313050-00
Chr01	irgsp1_rep	mRNA	11783910	11784899	.	+	.	ID=Os01t0313300-01;Name=Os01t0313300-01;Locus_id=Os01g0313300;CGSNL Gene Symbol=ERF68;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 68;Oryzabase Gene Symbol Synonym(s)=OsERF#068%2C OsERF068%2C OsERF68%2C AP2/EREBP#003%2C AP2/EREBP3%2C ERF2;Oryzabase Gene Name Synonym(s)=ethylene response factor 68%2C APETALA2/ethylene-responsive element binding protein 3%2C ethylene response factor 2;Note=Similar to EREBP-3 protein (Fragment).;Transcript_evidence=AK111775 (DDBJ%2C Best hit);ORF_evidence=NP_001146913.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J023075G11;Oryzabase=10581;Expression=AK111775;TENOR=Os01t0313300-01;KEGG=Os01t0313300-01
Chr01	irgsp1_rep	five_prime_UTR	11783910	11784039	.	+	.	Parent=Os01t0313300-01
Chr01	irgsp1_rep	CDS	11784040	11784154	.	+	0	Parent=Os01t0313300-01
Chr01	irgsp1_rep	CDS	11784237	11784745	.	+	2	Parent=Os01t0313300-01
Chr01	irgsp1_rep	three_prime_UTR	11784746	11784899	.	+	.	Parent=Os01t0313300-01
Chr01	irgsp1_rep	mRNA	11793851	11795359	.	-	.	ID=Os01t0313600-01;Name=Os01t0313600-01;Locus_id=Os01g0313600;Note=Conserved hypothetical protein.;Transcript_evidence=AK241412 (DDBJ%2C Best hit);ORF_evidence=Q655Q6 (UniProt);NIAS_FLcDNA=J065160B08;TENOR=Os01t0313600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	11794876	11795359	.	-	.	Parent=Os01t0313600-01
Chr01	irgsp1_rep	CDS	11794261	11794875	.	-	0	Parent=Os01t0313600-01
Chr01	irgsp1_rep	three_prime_UTR	11793851	11794260	.	-	.	Parent=Os01t0313600-01
Chr01	irgsp1_rep	mRNA	11801395	11803815	.	-	.	ID=Os01t0314000-01;Name=Os01t0314000-01;Locus_id=Os01g0314000;Note=Protein of unknown function DUF3615 domain containing protein.;Transcript_evidence=AK102427 (DDBJ%2C Best hit);ORF_evidence=Q8LQ82 (UniProt);InterPro=Protein of unknown function DUF3615 (IPR022059);NIAS_FLcDNA=J033093F20;TENOR=Os01t0314000-01
Chr01	irgsp1_rep	five_prime_UTR	11803698	11803815	.	-	.	Parent=Os01t0314000-01
Chr01	irgsp1_rep	CDS	11802416	11803697	.	-	0	Parent=Os01t0314000-01
Chr01	irgsp1_rep	CDS	11801567	11801877	.	-	2	Parent=Os01t0314000-01
Chr01	irgsp1_rep	three_prime_UTR	11801395	11801566	.	-	.	Parent=Os01t0314000-01
Chr01	irgsp1_rep	mRNA	11800240	11802735	.	-	.	ID=Os01t0314000-02;Name=Os01t0314000-02;Locus_id=Os01g0314000;Note=Protein of unknown function DUF3615 domain containing protein.;Transcript_evidence=AK106622 (DDBJ%2C Best hit);ORF_evidence=A2ZSD1 (UniProt);InterPro=Protein of unknown function DUF3615 (IPR022059);NIAS_FLcDNA=002-113-B03;TENOR=Os01t0314000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	11802735	11802735	.	-	.	Parent=Os01t0314000-02
Chr01	irgsp1_rep	CDS	11802416	11802734	.	-	0	Parent=Os01t0314000-02
Chr01	irgsp1_rep	CDS	11801567	11801877	.	-	2	Parent=Os01t0314000-02
Chr01	irgsp1_rep	three_prime_UTR	11800789	11801566	.	-	.	Parent=Os01t0314000-02
Chr01	irgsp1_rep	three_prime_UTR	11800240	11800502	.	-	.	Parent=Os01t0314000-02
Chr01	irgsp1_rep	mRNA	11801395	11803396	.	-	.	ID=Os01t0314000-03;Name=Os01t0314000-03;Locus_id=Os01g0314000;Note=Protein of unknown function DUF3615 domain containing protein.;Transcript_evidence=AK106418 (DDBJ%2C Best hit);ORF_evidence=Q8LQ82 (UniProt);InterPro=Protein of unknown function DUF3615 (IPR022059);NIAS_FLcDNA=002-103-A12;TENOR=Os01t0314000-03
Chr01	irgsp1_rep	five_prime_UTR	11803395	11803396	.	-	.	Parent=Os01t0314000-03
Chr01	irgsp1_rep	CDS	11802416	11803394	.	-	0	Parent=Os01t0314000-03
Chr01	irgsp1_rep	CDS	11801567	11801877	.	-	2	Parent=Os01t0314000-03
Chr01	irgsp1_rep	three_prime_UTR	11801395	11801566	.	-	.	Parent=Os01t0314000-03
Chr01	irgsp1_rep	mRNA	11804161	11809029	.	-	.	ID=Os01t0314100-01;Name=Os01t0314100-01;Locus_id=Os01g0314100;Note=Catalytic domain of components of various dehydrogenase complexes containing protein.;Transcript_evidence=AK067157 (DDBJ%2C Best hit);ORF_evidence=NP_001149990.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Biological Process: fatty-acyl-CoA biosynthetic process (GO:0046949),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746),Molecular Function: dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity (GO:0043754),Molecular Function: cofactor binding (GO:0048037);InterPro=Biotin/lipoyl attachment (IPR000089),2-oxoacid dehydrogenase acyltransferase%2C catalytic domain (IPR001078),2-oxo acid dehydrogenase%2C lipoyl-binding site (IPR003016),E3 binding (IPR004167),Single hybrid motif (IPR011053),Lipoamide Acyltransferase (IPR015761),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J013097E09;TENOR=Os01t0314100-01;KEGG=Os01t0314100-01 (EC:2.3.1.168)
Chr01	irgsp1_rep	five_prime_UTR	11808839	11809029	.	-	.	Parent=Os01t0314100-01
Chr01	irgsp1_rep	CDS	11808596	11808838	.	-	0	Parent=Os01t0314100-01
Chr01	irgsp1_rep	CDS	11808349	11808492	.	-	0	Parent=Os01t0314100-01
Chr01	irgsp1_rep	CDS	11807450	11807575	.	-	0	Parent=Os01t0314100-01
Chr01	irgsp1_rep	CDS	11806979	11807358	.	-	0	Parent=Os01t0314100-01
Chr01	irgsp1_rep	CDS	11806637	11806884	.	-	1	Parent=Os01t0314100-01
Chr01	irgsp1_rep	CDS	11805949	11806037	.	-	2	Parent=Os01t0314100-01
Chr01	irgsp1_rep	CDS	11804608	11804835	.	-	0	Parent=Os01t0314100-01
Chr01	irgsp1_rep	CDS	11804401	11804514	.	-	0	Parent=Os01t0314100-01
Chr01	irgsp1_rep	three_prime_UTR	11804161	11804400	.	-	.	Parent=Os01t0314100-01
Chr01	irgsp1_rep	mRNA	11812190	11815785	.	-	.	ID=Os01t0314300-01;Name=Os01t0314300-01;Locus_id=Os01g0314300;Note=Uncharacterized domain 2 containing protein.;Transcript_evidence=AK073419 (DDBJ%2C Best hit);ORF_evidence=NP_001147741.1 (RefSeq);GO=Molecular Function: RNA binding (GO:0003723);InterPro=Pseudouridine synthase/archaeosine transglycosylase (IPR002478),Uncharacterised domain CHP00451 (IPR004521),PUA-like domain (IPR015947),Translation-associated RNA-binding%2C predicted (IPR016437);NIAS_FLcDNA=J033044B03;Expression=AK073419;TENOR=Os01t0314300-01;KEGG=Os01t0314300-01
Chr01	irgsp1_rep	five_prime_UTR	11815665	11815785	.	-	.	Parent=Os01t0314300-01
Chr01	irgsp1_rep	CDS	11815654	11815664	.	-	0	Parent=Os01t0314300-01
Chr01	irgsp1_rep	CDS	11814166	11814247	.	-	1	Parent=Os01t0314300-01
Chr01	irgsp1_rep	CDS	11814010	11814077	.	-	0	Parent=Os01t0314300-01
Chr01	irgsp1_rep	CDS	11813807	11813904	.	-	1	Parent=Os01t0314300-01
Chr01	irgsp1_rep	CDS	11813440	11813576	.	-	2	Parent=Os01t0314300-01
Chr01	irgsp1_rep	CDS	11813100	11813167	.	-	0	Parent=Os01t0314300-01
Chr01	irgsp1_rep	CDS	11812728	11812791	.	-	1	Parent=Os01t0314300-01
Chr01	irgsp1_rep	CDS	11812489	11812506	.	-	0	Parent=Os01t0314300-01
Chr01	irgsp1_rep	three_prime_UTR	11812190	11812488	.	-	.	Parent=Os01t0314300-01
Chr01	irgsp1_rep	mRNA	11812242	11815733	.	-	.	ID=Os01t0314300-02;Name=Os01t0314300-02;Locus_id=Os01g0314300;Note=Uncharacterized domain 2 containing protein.;Transcript_evidence=AK104939 (DDBJ%2C Best hit);ORF_evidence=NP_001147741.1 (RefSeq);GO=Molecular Function: RNA binding (GO:0003723);InterPro=Pseudouridine synthase/archaeosine transglycosylase (IPR002478),Uncharacterised domain CHP00451 (IPR004521),PUA-like domain (IPR015947),Translation-associated RNA-binding%2C predicted (IPR016437);NIAS_FLcDNA=001-106-D01;Expression=AK104939;TENOR=Os01t0314300-02;KEGG=Os01t0314300-02
Chr01	irgsp1_rep	five_prime_UTR	11815665	11815733	.	-	.	Parent=Os01t0314300-02
Chr01	irgsp1_rep	CDS	11815654	11815664	.	-	0	Parent=Os01t0314300-02
Chr01	irgsp1_rep	CDS	11814166	11814247	.	-	1	Parent=Os01t0314300-02
Chr01	irgsp1_rep	CDS	11814010	11814077	.	-	0	Parent=Os01t0314300-02
Chr01	irgsp1_rep	CDS	11813807	11813904	.	-	1	Parent=Os01t0314300-02
Chr01	irgsp1_rep	CDS	11813440	11813576	.	-	2	Parent=Os01t0314300-02
Chr01	irgsp1_rep	CDS	11813100	11813167	.	-	0	Parent=Os01t0314300-02
Chr01	irgsp1_rep	CDS	11812728	11812791	.	-	1	Parent=Os01t0314300-02
Chr01	irgsp1_rep	CDS	11812489	11812506	.	-	0	Parent=Os01t0314300-02
Chr01	irgsp1_rep	three_prime_UTR	11812242	11812488	.	-	.	Parent=Os01t0314300-02
Chr01	irgsp1_rep	mRNA	11848194	11852000	.	+	.	ID=Os01t0314600-00;Name=Os01t0314600-00;Locus_id=Os01g0314600;Note=Similar to CytoChrome c oxidoreductase.;Transcript_evidence=DQ245885 (DDBJ);ORF_evidence=B6TJ55 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=RAG1-activating protein-1-related (IPR004316);TENOR=Os01t0314600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	11848194	11848373	.	+	0	Parent=Os01t0314600-00
Chr01	irgsp1_rep	CDS	11849866	11849985	.	+	0	Parent=Os01t0314600-00
Chr01	irgsp1_rep	CDS	11851830	11852000	.	+	0	Parent=Os01t0314600-00
Chr01	irgsp1_rep	mRNA	11863682	11864412	.	-	.	ID=Os01t0314800-01;Name=Os01t0314800-01;Locus_id=Os01g0314800;CGSNL Gene Symbol=LEA9;CGSNL Gene Name=LATE EMBRYOGENESIS ABUNDANT PROTEIN 9;Oryzabase Gene Symbol Synonym(s)=OsLEA9%2C OsLEA5%2C LEA5;Oryzabase Gene Name Synonym(s)=late embryogenesis abundant protein 9;Note=Late embryogenesis abundant protein 3 family protein.;Transcript_evidence=AK243113 (DDBJ%2C Best hit);ORF_evidence=Q9ATR1 (UniProt);GO=Biological Process: response to stress (GO:0006950);InterPro=Late embryogenesis abundant protein%2C LEA-5 (IPR004926);NIAS_FLcDNA=J100027C20;Oryzabase=10177;TENOR=Os01t0314800-01;KEGG=Os01t0314800-01
Chr01	irgsp1_rep	five_prime_UTR	11864333	11864412	.	-	.	Parent=Os01t0314800-01
Chr01	irgsp1_rep	CDS	11864289	11864332	.	-	0	Parent=Os01t0314800-01
Chr01	irgsp1_rep	CDS	11863920	11864157	.	-	1	Parent=Os01t0314800-01
Chr01	irgsp1_rep	three_prime_UTR	11863682	11863919	.	-	.	Parent=Os01t0314800-01
Chr01	irgsp1_rep	mRNA	11897584	11902407	.	+	.	ID=Os01t0315600-01;Name=Os01t0315600-01;Locus_id=Os01g0315600;Note=Similar to Monoglyceride lipase.;Transcript_evidence=AK110785 (DDBJ%2C Best hit);ORF_evidence=B4FRE0 (UniProt);InterPro=Alpha/beta hydrolase%2C N-terminal (IPR022742);NIAS_FLcDNA=002-171-C06;Expression=AK110785;TENOR=Os01t0315600-01;KEGG=Os01t0315600-01
Chr01	irgsp1_rep	five_prime_UTR	11897584	11897619	.	+	.	Parent=Os01t0315600-01
Chr01	irgsp1_rep	CDS	11897620	11897640	.	+	0	Parent=Os01t0315600-01
Chr01	irgsp1_rep	CDS	11897746	11897839	.	+	0	Parent=Os01t0315600-01
Chr01	irgsp1_rep	CDS	11898022	11898054	.	+	2	Parent=Os01t0315600-01
Chr01	irgsp1_rep	CDS	11901084	11901412	.	+	2	Parent=Os01t0315600-01
Chr01	irgsp1_rep	three_prime_UTR	11901413	11902407	.	+	.	Parent=Os01t0315600-01
Chr01	irgsp1_rep	mRNA	11906167	11906868	.	+	.	ID=Os01t0315700-01;Name=Os01t0315700-01;Locus_id=Os01g0315700;Note=Similar to Monoglyceride lipase.;Transcript_evidence=AK112057 (DDBJ%2C Best hit);ORF_evidence=B4FRE0 (UniProt);NIAS_FLcDNA=001-110-F09;TENOR=Os01t0315700-01;KEGG=Os01t0315700-01
Chr01	irgsp1_rep	five_prime_UTR	11906167	11906215	.	+	.	Parent=Os01t0315700-01
Chr01	irgsp1_rep	CDS	11906292	11906678	.	+	0	Parent=Os01t0315700-01
Chr01	irgsp1_rep	three_prime_UTR	11906679	11906868	.	+	.	Parent=Os01t0315700-01
Chr01	irgsp1_rep	mRNA	11906864	11910915	.	-	.	ID=Os01t0315800-01;Name=Os01t0315800-01;Locus_id=Os01g0315800;Oryzabase Gene Symbol Synonym(s)=OsUXS2%2C UXS-2%2C Osl381%2C l381;Oryzabase Gene Name Synonym(s)=dTDP-glucose 4-6-dehydratase-like protein%2C UDP-xylose synthase 2%2C UDP-glucuronic acid decarboxylase 2;Note=UDP-glucuronic acid decarboxylase (EC 4.1.1.35).;Transcript_evidence=AK101168 (DDBJ%2C Best hit);ORF_evidence=Q6B6L9 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033028I19;Oryzabase=13870;Expression=AK101168;TENOR=Os01t0315800-01;KEGG=Os01t0315800-01 (EC:4.1.1.35%2C EC:4.2.1.46)
Chr01	irgsp1_rep	five_prime_UTR	11910767	11910915	.	-	.	Parent=Os01t0315800-01
Chr01	irgsp1_rep	CDS	11910166	11910766	.	-	0	Parent=Os01t0315800-01
Chr01	irgsp1_rep	CDS	11909172	11909318	.	-	2	Parent=Os01t0315800-01
Chr01	irgsp1_rep	CDS	11908309	11908388	.	-	2	Parent=Os01t0315800-01
Chr01	irgsp1_rep	CDS	11908131	11908214	.	-	0	Parent=Os01t0315800-01
Chr01	irgsp1_rep	CDS	11907955	11908029	.	-	0	Parent=Os01t0315800-01
Chr01	irgsp1_rep	CDS	11907256	11907546	.	-	0	Parent=Os01t0315800-01
Chr01	irgsp1_rep	three_prime_UTR	11906864	11907255	.	-	.	Parent=Os01t0315800-01
Chr01	irgsp1_rep	mRNA	11906902	11909320	.	-	.	ID=Os01t0315800-02;Name=Os01t0315800-02;Locus_id=Os01g0315800;Oryzabase Gene Symbol Synonym(s)=OsUXS2%2C UXS-2%2C Osl381%2C l381;Oryzabase Gene Name Synonym(s)=dTDP-glucose 4-6-dehydratase-like protein%2C UDP-xylose synthase 2%2C UDP-glucuronic acid decarboxylase 2;Note=Similar to DTDP-glucose 4-6-dehydratase-like protein (Fragment).;Transcript_evidence=AK061857 (DDBJ%2C Best hit);ORF_evidence=Q8W2F7 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-040-G06;Oryzabase=13870;Expression=AK061857;TENOR=Os01t0315800-02;KEGG=Os01t0315800-02 (EC:4.1.1.35)
Chr01	irgsp1_rep	five_prime_UTR	11909320	11909320	.	-	.	Parent=Os01t0315800-02
Chr01	irgsp1_rep	CDS	11909172	11909319	.	-	0	Parent=Os01t0315800-02
Chr01	irgsp1_rep	CDS	11908309	11908388	.	-	2	Parent=Os01t0315800-02
Chr01	irgsp1_rep	CDS	11908131	11908214	.	-	0	Parent=Os01t0315800-02
Chr01	irgsp1_rep	CDS	11907955	11908029	.	-	0	Parent=Os01t0315800-02
Chr01	irgsp1_rep	CDS	11907256	11907546	.	-	0	Parent=Os01t0315800-02
Chr01	irgsp1_rep	three_prime_UTR	11906902	11907255	.	-	.	Parent=Os01t0315800-02
Chr01	irgsp1_rep	mRNA	11907260	11910774	.	+	.	ID=Os01t0315850-00;Name=Os01t0315850-00;Locus_id=Os01g0315850;Note=Hypothetical protein.;Transcript_evidence=tplb0036f05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0315850-00
Chr01	irgsp1_rep	five_prime_UTR	11907260	11907261	.	+	.	Parent=Os01t0315850-00
Chr01	irgsp1_rep	CDS	11907262	11907542	.	+	0	Parent=Os01t0315850-00
Chr01	irgsp1_rep	CDS	11907951	11908025	.	+	1	Parent=Os01t0315850-00
Chr01	irgsp1_rep	CDS	11908121	11908211	.	+	1	Parent=Os01t0315850-00
Chr01	irgsp1_rep	CDS	11908306	11908386	.	+	0	Parent=Os01t0315850-00
Chr01	irgsp1_rep	CDS	11909170	11909314	.	+	0	Parent=Os01t0315850-00
Chr01	irgsp1_rep	CDS	11910162	11910556	.	+	2	Parent=Os01t0315850-00
Chr01	irgsp1_rep	three_prime_UTR	11910557	11910774	.	+	.	Parent=Os01t0315850-00
Chr01	irgsp1_rep	mRNA	11939917	11943540	.	+	.	ID=Os01t0316001-01;Name=Os01t0316001-01;Locus_id=Os01g0316001;Note=Hypothetical conserved gene.;Transcript_evidence=AK288515 (DDBJ%2C Best hit);ORF_evidence=B9EVT4 (UniProt);NIAS_FLcDNA=J090042I02;TENOR=Os01t0316001-01;KEGG=Os01t0316001-01
Chr01	irgsp1_rep	five_prime_UTR	11939917	11940580	.	+	.	Parent=Os01t0316001-01
Chr01	irgsp1_rep	CDS	11940581	11940880	.	+	0	Parent=Os01t0316001-01
Chr01	irgsp1_rep	three_prime_UTR	11940881	11943540	.	+	.	Parent=Os01t0316001-01
Chr01	irgsp1_rep	mRNA	11944340	11945793	.	-	.	ID=Os01t0316100-00;Name=Os01t0316100-00;Locus_id=Os01g0316100;Note=FAD dependent oxidoreductase family protein.;Transcript_evidence=BT034423 (DDBJ);ORF_evidence=NP_001149528.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FAD dependent oxidoreductase (IPR006076);TENOR=Os01t0316100-00;KEGG=Os01t0316100-00
Chr01	irgsp1_rep	CDS	11944393	11945793	.	-	0	Parent=Os01t0316100-00
Chr01	irgsp1_rep	three_prime_UTR	11944340	11944392	.	-	.	Parent=Os01t0316100-00
Chr01	irgsp1_rep	mRNA	11953342	11955432	.	-	.	ID=Os01t0316500-01;Name=Os01t0316500-01;Locus_id=Os01g0316500;Note=Conserved hypothetical protein.;Transcript_evidence=AK099887 (DDBJ%2C Best hit);ORF_evidence=NP_001144462.1 (RefSeq);NIAS_FLcDNA=J013112E08;Expression=AK099887;TENOR=Os01t0316500-01;KEGG=Os01t0316500-01
Chr01	irgsp1_rep	five_prime_UTR	11955382	11955432	.	-	.	Parent=Os01t0316500-01
Chr01	irgsp1_rep	CDS	11954757	11955381	.	-	0	Parent=Os01t0316500-01
Chr01	irgsp1_rep	CDS	11953612	11953727	.	-	2	Parent=Os01t0316500-01
Chr01	irgsp1_rep	three_prime_UTR	11953342	11953611	.	-	.	Parent=Os01t0316500-01
Chr01	irgsp1_rep	mRNA	11958911	11964676	.	+	.	ID=Os01t0316600-01;Name=Os01t0316600-01;Locus_id=Os01g0316600;Note=Similar to pre-mRNA-splicing factor SF2.;Transcript_evidence=AK103534 (DDBJ%2C Best hit);ORF_evidence=NP_001150424.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033132A12;TENOR=Os01t0316600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	11958911	11958911	.	+	.	Parent=Os01t0316600-01
Chr01	irgsp1_rep	CDS	11958912	11959128	.	+	0	Parent=Os01t0316600-01
Chr01	irgsp1_rep	CDS	11960309	11960400	.	+	2	Parent=Os01t0316600-01
Chr01	irgsp1_rep	CDS	11961172	11961237	.	+	0	Parent=Os01t0316600-01
Chr01	irgsp1_rep	three_prime_UTR	11961515	11961589	.	+	.	Parent=Os01t0316600-01
Chr01	irgsp1_rep	three_prime_UTR	11961674	11961779	.	+	.	Parent=Os01t0316600-01
Chr01	irgsp1_rep	three_prime_UTR	11961861	11961907	.	+	.	Parent=Os01t0316600-01
Chr01	irgsp1_rep	three_prime_UTR	11961977	11962034	.	+	.	Parent=Os01t0316600-01
Chr01	irgsp1_rep	three_prime_UTR	11962420	11962469	.	+	.	Parent=Os01t0316600-01
Chr01	irgsp1_rep	three_prime_UTR	11962849	11962905	.	+	.	Parent=Os01t0316600-01
Chr01	irgsp1_rep	three_prime_UTR	11963030	11964058	.	+	.	Parent=Os01t0316600-01
Chr01	irgsp1_rep	three_prime_UTR	11964151	11964213	.	+	.	Parent=Os01t0316600-01
Chr01	irgsp1_rep	three_prime_UTR	11964344	11964676	.	+	.	Parent=Os01t0316600-01
Chr01	irgsp1_rep	mRNA	11970752	11972299	.	+	.	ID=Os01t0316800-01;Name=Os01t0316800-01;Locus_id=Os01g0316800;Note=Similar to Deleted in split hand/splt foot protein (Fragment).;Transcript_evidence=AK058821 (DDBJ%2C Best hit),AK119788 (DDBJ%2C Best hit);ORF_evidence=A6N0Q2 (UniProt);NIAS_FLcDNA=001-003-G09,002-174-G04;TENOR=Os01t0316800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	11970752	11970802	.	+	.	Parent=Os01t0316800-01
Chr01	irgsp1_rep	five_prime_UTR	11970885	11970958	.	+	.	Parent=Os01t0316800-01
Chr01	irgsp1_rep	CDS	11970959	11971031	.	+	0	Parent=Os01t0316800-01
Chr01	irgsp1_rep	CDS	11972013	11972179	.	+	2	Parent=Os01t0316800-01
Chr01	irgsp1_rep	three_prime_UTR	11972180	11972299	.	+	.	Parent=Os01t0316800-01
Chr01	irgsp1_rep	mRNA	11974217	11981782	.	+	.	ID=Os01t0316900-01;Name=Os01t0316900-01;Locus_id=Os01g0316900;Note=Conserved hypothetical protein.;Transcript_evidence=AK070437 (DDBJ%2C Best hit);ORF_evidence=B9EVT7 (UniProt);NIAS_FLcDNA=J023050F17;Expression=AK070437;TENOR=Os01t0316900-01;KEGG=Os01t0316900-01
Chr01	irgsp1_rep	five_prime_UTR	11974217	11974442	.	+	.	Parent=Os01t0316900-01
Chr01	irgsp1_rep	five_prime_UTR	11974551	11974656	.	+	.	Parent=Os01t0316900-01
Chr01	irgsp1_rep	CDS	11974657	11975195	.	+	0	Parent=Os01t0316900-01
Chr01	irgsp1_rep	CDS	11977790	11978100	.	+	1	Parent=Os01t0316900-01
Chr01	irgsp1_rep	CDS	11978211	11978305	.	+	2	Parent=Os01t0316900-01
Chr01	irgsp1_rep	three_prime_UTR	11978306	11980083	.	+	.	Parent=Os01t0316900-01
Chr01	irgsp1_rep	three_prime_UTR	11980894	11981782	.	+	.	Parent=Os01t0316900-01
Chr01	irgsp1_rep	mRNA	11977716	11981576	.	-	.	ID=Os01t0317125-00;Name=Os01t0317125-00;Locus_id=Os01g0317125;Note=Hypothetical protein.;Transcript_evidence=tplb0041e13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0317125-00
Chr01	irgsp1_rep	five_prime_UTR	11981376	11981576	.	-	.	Parent=Os01t0317125-00
Chr01	irgsp1_rep	five_prime_UTR	11981115	11981199	.	-	.	Parent=Os01t0317125-00
Chr01	irgsp1_rep	five_prime_UTR	11980897	11981035	.	-	.	Parent=Os01t0317125-00
Chr01	irgsp1_rep	five_prime_UTR	11979624	11980090	.	-	.	Parent=Os01t0317125-00
Chr01	irgsp1_rep	five_prime_UTR	11978245	11978296	.	-	.	Parent=Os01t0317125-00
Chr01	irgsp1_rep	CDS	11978209	11978244	.	-	0	Parent=Os01t0317125-00
Chr01	irgsp1_rep	CDS	11977883	11978095	.	-	0	Parent=Os01t0317125-00
Chr01	irgsp1_rep	three_prime_UTR	11977716	11977882	.	-	.	Parent=Os01t0317125-00
Chr01	irgsp1_rep	mRNA	12031970	12032254	.	+	.	ID=Os01t0317500-00;Name=Os01t0317500-00;Locus_id=Os01g0317500;Note=Similar to esterase/lipase/thioesterase family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=XP_002871877.1 (RefSeq);TENOR=Os01t0317500-00
Chr01	irgsp1_rep	CDS	12031970	12032254	.	+	0	Parent=Os01t0317500-00
Chr01	irgsp1_rep	mRNA	12067684	12068949	.	+	.	ID=Os01t0317800-01;Name=Os01t0317800-01;Locus_id=Os01g0317800;Note=Alpha/beta hydrolase family protein.;Transcript_evidence=AK105905 (DDBJ%2C Best hit),AK100118 (DDBJ%2C Best hit);ORF_evidence=NP_197430.1 (RefSeq);InterPro=Alpha/beta hydrolase fold-1 (IPR000073);NIAS_FLcDNA=001-204-G01,J023007F16;Expression=AK105905;TENOR=Os01t0317800-01;KEGG=Os01t0317800-01
Chr01	irgsp1_rep	five_prime_UTR	12067684	12067751	.	+	.	Parent=Os01t0317800-01
Chr01	irgsp1_rep	CDS	12067752	12068741	.	+	0	Parent=Os01t0317800-01
Chr01	irgsp1_rep	three_prime_UTR	12068742	12068949	.	+	.	Parent=Os01t0317800-01
Chr01	irgsp1_rep	mRNA	12074526	12075088	.	+	.	ID=Os01t0318000-00;Name=Os01t0318000-00;Locus_id=Os01g0318000;Note=Similar to esterase/lipase/thioesterase family protein.;Transcript_evidence=AK377047 (DDBJ);ORF_evidence=NP_197430.1 (RefSeq);TENOR=Os01t0318000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	12074526	12075038	.	+	0	Parent=Os01t0318000-00
Chr01	irgsp1_rep	three_prime_UTR	12075039	12075088	.	+	.	Parent=Os01t0318000-00
Chr01	irgsp1_rep	mRNA	12078156	12078670	.	-	.	ID=Os01t0318201-01;Name=Os01t0318201-01;Locus_id=Os01g0318201;Note=Non-protein coding transcript.;Transcript_evidence=AK242169 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J075157P08;TENOR=Os01t0318201-01
Chr01	irgsp1_rep	exon	12078156	12078670	.	-	.	Parent=Os01t0318201-01
Chr01	irgsp1_rep	mRNA	12091637	12093705	.	-	.	ID=Os01t0318202-01;Name=Os01t0318202-01;Locus_id=Os01g0318202;Note=Hypothetical gene.;Transcript_evidence=AK289028 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090090M16;TENOR=Os01t0318202-01
Chr01	irgsp1_rep	five_prime_UTR	12093310	12093705	.	-	.	Parent=Os01t0318202-01
Chr01	irgsp1_rep	CDS	12091637	12093309	.	-	0	Parent=Os01t0318202-01
Chr01	irgsp1_rep	mRNA	12092783	12093601	.	+	.	ID=Os01t0318400-00;Name=Os01t0318400-00;Locus_id=Os01g0318400;CGSNL Gene Symbol=DLN9;CGSNL Gene Name=DLN REPRESSOR 9;Oryzabase Gene Symbol Synonym(s)=OsDLN9;Oryzabase Gene Name Synonym(s)=DLN repressor 9%2C DLN motif protein 9;Note=Conserved hypothetical protein.;Transcript_evidence=AB110194 (DDBJ%2C Best hit);ORF_evidence=Q94D75 (UniProt);Oryzabase=23155;Expression=AB110194;TENOR=Os01t0318400-00;KEGG=Os01t0318400-00
Chr01	irgsp1_rep	five_prime_UTR	12092783	12092784	.	+	.	Parent=Os01t0318400-00
Chr01	irgsp1_rep	CDS	12092785	12093276	.	+	0	Parent=Os01t0318400-00
Chr01	irgsp1_rep	three_prime_UTR	12093277	12093601	.	+	.	Parent=Os01t0318400-00
Chr01	irgsp1_rep	mRNA	12106488	12110603	.	-	.	ID=Os01t0318600-00;Name=Os01t0318600-00;Locus_id=Os01g0318600;Note=Hypothetical protein.;Transcript_evidence=tplb0030n22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0318600-00
Chr01	irgsp1_rep	five_prime_UTR	12110603	12110603	.	-	.	Parent=Os01t0318600-00
Chr01	irgsp1_rep	CDS	12110384	12110602	.	-	0	Parent=Os01t0318600-00
Chr01	irgsp1_rep	three_prime_UTR	12110034	12110383	.	-	.	Parent=Os01t0318600-00
Chr01	irgsp1_rep	three_prime_UTR	12109789	12109918	.	-	.	Parent=Os01t0318600-00
Chr01	irgsp1_rep	three_prime_UTR	12109303	12109399	.	-	.	Parent=Os01t0318600-00
Chr01	irgsp1_rep	three_prime_UTR	12108689	12108852	.	-	.	Parent=Os01t0318600-00
Chr01	irgsp1_rep	three_prime_UTR	12108117	12108271	.	-	.	Parent=Os01t0318600-00
Chr01	irgsp1_rep	three_prime_UTR	12107545	12107699	.	-	.	Parent=Os01t0318600-00
Chr01	irgsp1_rep	three_prime_UTR	12107192	12107416	.	-	.	Parent=Os01t0318600-00
Chr01	irgsp1_rep	three_prime_UTR	12106488	12107062	.	-	.	Parent=Os01t0318600-00
Chr01	irgsp1_rep	mRNA	12108871	12110713	.	+	.	ID=Os01t0318700-01;Name=Os01t0318700-01;Locus_id=Os01g0318700;Note=Similar to ABC1 protein (Fragment).;Transcript_evidence=AK105594 (DDBJ%2C Best hit);ORF_evidence=XP_002874966.1 (RefSeq);NIAS_FLcDNA=001-129-A10;Expression=AK105594;TENOR=Os01t0318700-01;KEGG=Os01t0318700-01
Chr01	irgsp1_rep	five_prime_UTR	12108871	12109166	.	+	.	Parent=Os01t0318700-01
Chr01	irgsp1_rep	CDS	12109167	12109410	.	+	0	Parent=Os01t0318700-01
Chr01	irgsp1_rep	CDS	12109798	12109919	.	+	2	Parent=Os01t0318700-01
Chr01	irgsp1_rep	CDS	12110035	12110424	.	+	0	Parent=Os01t0318700-01
Chr01	irgsp1_rep	three_prime_UTR	12110425	12110713	.	+	.	Parent=Os01t0318700-01
Chr01	irgsp1_rep	mRNA	12117107	12123026	.	+	.	ID=Os01t0319000-01;Name=Os01t0319000-01;Locus_id=Os01g0319000;Note=Similar to Pectin acetylesterase (Fragment).;Transcript_evidence=AK107088 (DDBJ%2C Best hit);ORF_evidence=GeneMark;InterPro=Pectinacetylesterase (IPR004963);NIAS_FLcDNA=002-121-G08;Expression=AK107088;TENOR=Os01t0319000-01;KEGG=Os01t0319000-01
Chr01	irgsp1_rep	five_prime_UTR	12117107	12117724	.	+	.	Parent=Os01t0319000-01
Chr01	irgsp1_rep	CDS	12117725	12117938	.	+	0	Parent=Os01t0319000-01
Chr01	irgsp1_rep	CDS	12120831	12121043	.	+	2	Parent=Os01t0319000-01
Chr01	irgsp1_rep	CDS	12121134	12121207	.	+	2	Parent=Os01t0319000-01
Chr01	irgsp1_rep	CDS	12121286	12121497	.	+	0	Parent=Os01t0319000-01
Chr01	irgsp1_rep	CDS	12121589	12121703	.	+	1	Parent=Os01t0319000-01
Chr01	irgsp1_rep	CDS	12121847	12121924	.	+	0	Parent=Os01t0319000-01
Chr01	irgsp1_rep	CDS	12122084	12122189	.	+	0	Parent=Os01t0319000-01
Chr01	irgsp1_rep	CDS	12122326	12122468	.	+	2	Parent=Os01t0319000-01
Chr01	irgsp1_rep	CDS	12122629	12122730	.	+	0	Parent=Os01t0319000-01
Chr01	irgsp1_rep	three_prime_UTR	12122731	12123026	.	+	.	Parent=Os01t0319000-01
Chr01	irgsp1_rep	mRNA	12117365	12122789	.	+	.	ID=Os01t0319000-02;Name=Os01t0319000-02;Locus_id=Os01g0319000;Note=Similar to Pectin acetylesterase (Fragment).;Transcript_evidence=AK067689 (DDBJ%2C Best hit);ORF_evidence=GeneMark;InterPro=Pectinacetylesterase (IPR004963);NIAS_FLcDNA=J013117E22;Expression=AK067689;TENOR=Os01t0319000-02;KEGG=Os01t0319000-02
Chr01	irgsp1_rep	five_prime_UTR	12117365	12117724	.	+	.	Parent=Os01t0319000-02
Chr01	irgsp1_rep	CDS	12117725	12117938	.	+	0	Parent=Os01t0319000-02
Chr01	irgsp1_rep	CDS	12120831	12121043	.	+	2	Parent=Os01t0319000-02
Chr01	irgsp1_rep	CDS	12121134	12121207	.	+	2	Parent=Os01t0319000-02
Chr01	irgsp1_rep	CDS	12121286	12121497	.	+	0	Parent=Os01t0319000-02
Chr01	irgsp1_rep	CDS	12121589	12121703	.	+	1	Parent=Os01t0319000-02
Chr01	irgsp1_rep	CDS	12121847	12121924	.	+	0	Parent=Os01t0319000-02
Chr01	irgsp1_rep	CDS	12122084	12122189	.	+	0	Parent=Os01t0319000-02
Chr01	irgsp1_rep	CDS	12122326	12122468	.	+	2	Parent=Os01t0319000-02
Chr01	irgsp1_rep	CDS	12122629	12122730	.	+	0	Parent=Os01t0319000-02
Chr01	irgsp1_rep	three_prime_UTR	12122731	12122789	.	+	.	Parent=Os01t0319000-02
Chr01	irgsp1_rep	mRNA	12117811	12122730	.	-	.	ID=Os01t0319066-00;Name=Os01t0319066-00;Locus_id=Os01g0319066;Note=Hypothetical protein.;Transcript_evidence=tplb0057m22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0319066-00
Chr01	irgsp1_rep	five_prime_UTR	12122685	12122730	.	-	.	Parent=Os01t0319066-00
Chr01	irgsp1_rep	CDS	12122628	12122684	.	-	0	Parent=Os01t0319066-00
Chr01	irgsp1_rep	CDS	12122324	12122468	.	-	0	Parent=Os01t0319066-00
Chr01	irgsp1_rep	CDS	12122081	12122187	.	-	2	Parent=Os01t0319066-00
Chr01	irgsp1_rep	CDS	12121865	12121921	.	-	0	Parent=Os01t0319066-00
Chr01	irgsp1_rep	CDS	12121596	12121719	.	-	0	Parent=Os01t0319066-00
Chr01	irgsp1_rep	CDS	12121461	12121504	.	-	2	Parent=Os01t0319066-00
Chr01	irgsp1_rep	three_prime_UTR	12121276	12121460	.	-	.	Parent=Os01t0319066-00
Chr01	irgsp1_rep	three_prime_UTR	12121142	12121197	.	-	.	Parent=Os01t0319066-00
Chr01	irgsp1_rep	three_prime_UTR	12120847	12121053	.	-	.	Parent=Os01t0319066-00
Chr01	irgsp1_rep	three_prime_UTR	12117811	12117954	.	-	.	Parent=Os01t0319066-00
Chr01	irgsp1_rep	mRNA	12129716	12131035	.	-	.	ID=Os01t0319200-00;Name=Os01t0319200-00;Locus_id=Os01g0319200;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001042887.1 (RefSeq);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);TENOR=Os01t0319200-00;KEGG=Os01t0319200-00
Chr01	irgsp1_rep	CDS	12129716	12131035	.	-	0	Parent=Os01t0319200-00
Chr01	irgsp1_rep	mRNA	12157459	12161767	.	-	.	ID=Os01t0319400-01;Name=Os01t0319400-01;Locus_id=Os01g0319400;Note=Protein of unknown function DUF247%2C plant domain containing protein.;Transcript_evidence=AK070361 (DDBJ%2C Best hit);ORF_evidence=A2WP55 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);NIAS_FLcDNA=J023048D19;TENOR=Os01t0319400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	12161495	12161767	.	-	.	Parent=Os01t0319400-01
Chr01	irgsp1_rep	five_prime_UTR	12159054	12159072	.	-	.	Parent=Os01t0319400-01
Chr01	irgsp1_rep	CDS	12157635	12159053	.	-	0	Parent=Os01t0319400-01
Chr01	irgsp1_rep	three_prime_UTR	12157459	12157634	.	-	.	Parent=Os01t0319400-01
Chr01	irgsp1_rep	mRNA	12203402	12204078	.	-	.	ID=Os01t0320400-01;Name=Os01t0320400-01;Locus_id=Os01g0320400;Note=Conserved hypothetical protein.;Transcript_evidence=AK287551 (DDBJ%2C Best hit);ORF_evidence=NP_001172303.1 (RefSeq);NIAS_FLcDNA=J065018E11;TENOR=Os01t0320400-01;KEGG=Os01t0320400-01
Chr01	irgsp1_rep	five_prime_UTR	12203998	12204078	.	-	.	Parent=Os01t0320400-01
Chr01	irgsp1_rep	CDS	12203965	12203997	.	-	0	Parent=Os01t0320400-01
Chr01	irgsp1_rep	CDS	12203533	12203817	.	-	0	Parent=Os01t0320400-01
Chr01	irgsp1_rep	three_prime_UTR	12203402	12203532	.	-	.	Parent=Os01t0320400-01
Chr01	irgsp1_rep	mRNA	12214028	12214637	.	+	.	ID=Os01t0320700-01;Name=Os01t0320700-01;Locus_id=Os01g0320700;Note=Hypothetical protein.;Transcript_evidence=AK063226 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-112-E11;TENOR=Os01t0320700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	12214028	12214029	.	+	.	Parent=Os01t0320700-01
Chr01	irgsp1_rep	CDS	12214030	12214266	.	+	0	Parent=Os01t0320700-01
Chr01	irgsp1_rep	three_prime_UTR	12214267	12214637	.	+	.	Parent=Os01t0320700-01
Chr01	irgsp1_rep	mRNA	12235589	12248125	.	-	.	ID=Os01t0321300-00;Name=Os01t0321300-00;Locus_id=Os01g0321300;Note=Similar to Protein translocase subunit secA.;Transcript_evidence=AK355166 (DDBJ);ORF_evidence=C5XIW8 (UniProt);GO=Biological Process: protein targeting (GO:0006605),Biological Process: intracellular protein transport (GO:0006886),Biological Process: protein import (GO:0017038),Cellular Component: membrane (GO:0016020),Molecular Function: ATP binding (GO:0005524);InterPro=SecA protein (IPR000185),SecA DEAD-like%2C N-terminal (IPR011115),SecA preprotein%2C cross-linking domain (IPR011130),SecA motor DEAD (IPR014018);TENOR=Os01t0321300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	12247703	12248125	.	-	0	Parent=Os01t0321300-00
Chr01	irgsp1_rep	CDS	12246119	12246398	.	-	0	Parent=Os01t0321300-00
Chr01	irgsp1_rep	CDS	12245602	12245705	.	-	2	Parent=Os01t0321300-00
Chr01	irgsp1_rep	CDS	12245263	12245442	.	-	0	Parent=Os01t0321300-00
Chr01	irgsp1_rep	CDS	12244427	12244645	.	-	0	Parent=Os01t0321300-00
Chr01	irgsp1_rep	CDS	12243709	12243826	.	-	0	Parent=Os01t0321300-00
Chr01	irgsp1_rep	CDS	12243000	12243113	.	-	2	Parent=Os01t0321300-00
Chr01	irgsp1_rep	CDS	12242872	12242876	.	-	2	Parent=Os01t0321300-00
Chr01	irgsp1_rep	three_prime_UTR	12242709	12242871	.	-	.	Parent=Os01t0321300-00
Chr01	irgsp1_rep	three_prime_UTR	12241776	12241951	.	-	.	Parent=Os01t0321300-00
Chr01	irgsp1_rep	three_prime_UTR	12241077	12241143	.	-	.	Parent=Os01t0321300-00
Chr01	irgsp1_rep	three_prime_UTR	12240613	12240918	.	-	.	Parent=Os01t0321300-00
Chr01	irgsp1_rep	three_prime_UTR	12239226	12240283	.	-	.	Parent=Os01t0321300-00
Chr01	irgsp1_rep	three_prime_UTR	12239013	12239138	.	-	.	Parent=Os01t0321300-00
Chr01	irgsp1_rep	three_prime_UTR	12238855	12238923	.	-	.	Parent=Os01t0321300-00
Chr01	irgsp1_rep	three_prime_UTR	12238483	12238584	.	-	.	Parent=Os01t0321300-00
Chr01	irgsp1_rep	three_prime_UTR	12237245	12237496	.	-	.	Parent=Os01t0321300-00
Chr01	irgsp1_rep	three_prime_UTR	12237070	12237137	.	-	.	Parent=Os01t0321300-00
Chr01	irgsp1_rep	three_prime_UTR	12236819	12236936	.	-	.	Parent=Os01t0321300-00
Chr01	irgsp1_rep	three_prime_UTR	12236149	12236388	.	-	.	Parent=Os01t0321300-00
Chr01	irgsp1_rep	three_prime_UTR	12235589	12235732	.	-	.	Parent=Os01t0321300-00
Chr01	irgsp1_rep	mRNA	12248641	12249394	.	-	.	ID=Os01t0321500-00;Name=Os01t0321500-00;Locus_id=Os01g0321500;Note=Hypothetical protein.;Transcript_evidence=EU971891 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0321500-00
Chr01	irgsp1_rep	five_prime_UTR	12249394	12249394	.	-	.	Parent=Os01t0321500-00
Chr01	irgsp1_rep	CDS	12249148	12249393	.	-	0	Parent=Os01t0321500-00
Chr01	irgsp1_rep	three_prime_UTR	12248964	12249147	.	-	.	Parent=Os01t0321500-00
Chr01	irgsp1_rep	three_prime_UTR	12248641	12248737	.	-	.	Parent=Os01t0321500-00
Chr01	irgsp1_rep	mRNA	12258138	12263046	.	-	.	ID=Os01t0321700-01;Name=Os01t0321700-01;Locus_id=Os01g0321700;Note=Similar to predicted protein.;Transcript_evidence=AK070488 (DDBJ%2C Best hit);ORF_evidence=NP_567217.1 (RefSeq);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888),Cellular Component: COPII vesicle coat (GO:0030127),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C Sec23/Sec24-type (IPR006895),Sec23/Sec24%2C trunk domain (IPR006896),Sec23/Sec24%2C helical domain (IPR006900),Sec23/Sec24 beta-sandwich (IPR012990);NIAS_FLcDNA=J023049C21;Expression=AK070488;TENOR=Os01t0321700-01;KEGG=Os01t0321700-01
Chr01	irgsp1_rep	five_prime_UTR	12262932	12263046	.	-	.	Parent=Os01t0321700-01
Chr01	irgsp1_rep	CDS	12262482	12262931	.	-	0	Parent=Os01t0321700-01
Chr01	irgsp1_rep	CDS	12260428	12262248	.	-	0	Parent=Os01t0321700-01
Chr01	irgsp1_rep	CDS	12259252	12259410	.	-	0	Parent=Os01t0321700-01
Chr01	irgsp1_rep	three_prime_UTR	12258840	12259251	.	-	.	Parent=Os01t0321700-01
Chr01	irgsp1_rep	three_prime_UTR	12258138	12258666	.	-	.	Parent=Os01t0321700-01
Chr01	irgsp1_rep	mRNA	12258257	12260926	.	-	.	ID=Os01t0321700-02;Name=Os01t0321700-02;Locus_id=Os01g0321700;Note=Similar to predicted protein.;Transcript_evidence=AK059365 (DDBJ%2C Best hit);ORF_evidence=NP_567217.1 (RefSeq);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888),Cellular Component: COPII vesicle coat (GO:0030127);InterPro=Sec23/Sec24%2C helical domain (IPR006900),Gelsolin domain (IPR007123);NIAS_FLcDNA=001-026-E05;Expression=AK059365;TENOR=Os01t0321700-02;KEGG=Os01t0321700-02
Chr01	irgsp1_rep	five_prime_UTR	12260926	12260926	.	-	.	Parent=Os01t0321700-02
Chr01	irgsp1_rep	CDS	12260428	12260925	.	-	0	Parent=Os01t0321700-02
Chr01	irgsp1_rep	CDS	12259294	12259410	.	-	0	Parent=Os01t0321700-02
Chr01	irgsp1_rep	CDS	12258840	12258911	.	-	0	Parent=Os01t0321700-02
Chr01	irgsp1_rep	CDS	12258529	12258666	.	-	0	Parent=Os01t0321700-02
Chr01	irgsp1_rep	three_prime_UTR	12258257	12258528	.	-	.	Parent=Os01t0321700-02
Chr01	irgsp1_rep	mRNA	12264911	12269038	.	+	.	ID=Os01t0321800-01;Name=Os01t0321800-01;Locus_id=Os01g0321800;Note=Gas vesicle protein GvpC repeat containing protein.;Transcript_evidence=AK064712 (DDBJ%2C Best hit);ORF_evidence=A2WP65 (UniProt);InterPro=NEFA-interacting nuclear protein NIP30%2C N-terminal (IPR019331);NIAS_FLcDNA=002-118-C08;Expression=AK064712;TENOR=Os01t0321800-01;KEGG=Os01t0321800-01
Chr01	irgsp1_rep	five_prime_UTR	12264911	12264973	.	+	.	Parent=Os01t0321800-01
Chr01	irgsp1_rep	CDS	12264974	12265060	.	+	0	Parent=Os01t0321800-01
Chr01	irgsp1_rep	CDS	12265165	12265239	.	+	0	Parent=Os01t0321800-01
Chr01	irgsp1_rep	CDS	12265344	12265401	.	+	0	Parent=Os01t0321800-01
Chr01	irgsp1_rep	CDS	12267160	12267215	.	+	2	Parent=Os01t0321800-01
Chr01	irgsp1_rep	CDS	12268150	12268212	.	+	0	Parent=Os01t0321800-01
Chr01	irgsp1_rep	CDS	12268369	12268431	.	+	0	Parent=Os01t0321800-01
Chr01	irgsp1_rep	CDS	12268591	12268821	.	+	0	Parent=Os01t0321800-01
Chr01	irgsp1_rep	three_prime_UTR	12268822	12269038	.	+	.	Parent=Os01t0321800-01
Chr01	irgsp1_rep	mRNA	12279993	12280517	.	-	.	ID=Os01t0321900-00;Name=Os01t0321900-00;Locus_id=Os01g0321900;Note=Hypothetical conserved gene.;Transcript_evidence=CT834938 (DDBJ%2C Best hit);ORF_evidence=A2WP70 (UniProt);TENOR=Os01t0321900-00;KEGG=Os01t0321900-00
Chr01	irgsp1_rep	CDS	12280231	12280517	.	-	0	Parent=Os01t0321900-00
Chr01	irgsp1_rep	CDS	12280146	12280224	.	-	1	Parent=Os01t0321900-00
Chr01	irgsp1_rep	three_prime_UTR	12279993	12280145	.	-	.	Parent=Os01t0321900-00
Chr01	irgsp1_rep	mRNA	12291766	12292395	.	-	.	ID=Os01t0322300-00;Name=Os01t0322300-00;Locus_id=Os01g0322300;Note=Similar to soluble inorganic pyrophosphatase.;Transcript_evidence=FP096190 (DDBJ);ORF_evidence=NP_001104889.1 (RefSeq);GO=Biological Process: phosphate-containing compound metabolic process (GO:0006796),Cellular Component: cytoplasm (GO:0005737),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: inorganic diphosphatase activity (GO:0004427);InterPro=Inorganic pyrophosphatase (IPR008162);TENOR=Os01t0322300-00
Chr01	irgsp1_rep	CDS	12292269	12292395	.	-	0	Parent=Os01t0322300-00
Chr01	irgsp1_rep	CDS	12292081	12292162	.	-	2	Parent=Os01t0322300-00
Chr01	irgsp1_rep	CDS	12291934	12291949	.	-	1	Parent=Os01t0322300-00
Chr01	irgsp1_rep	three_prime_UTR	12291766	12291933	.	-	.	Parent=Os01t0322300-00
Chr01	irgsp1_rep	mRNA	12301586	12302556	.	+	.	ID=Os01t0322700-01;Name=Os01t0322700-01;Locus_id=Os01g0322700;RAP-DB Gene Symbol Synonym(s)=miR408 %2C OsmiR408;Note=Primary microRNA of OsmiR408%3B Target gene(s): OsUCL8 (Os03g0709100)%2C OsUCL7 (Os03g0259100)%2C Regulation of panicle branching and grain weight%2C Regulation of grain yield and photosynthesis;Transcript_evidence=AK108747,AK101374;ORF_evidence=NONE;NIAS_FLcDNA=002-150-F01,J033035O08;Manual Curation=December 17%2C 2018;Literature_PMID=28904074,28955376;TENOR=Os01t0322700-01
Chr01	irgsp1_rep	exon	12301586	12302556	.	+	.	Parent=Os01t0322700-01
Chr01	irgsp1_rep	mRNA	12303210	12309435	.	-	.	ID=Os01t0322800-01;Name=Os01t0322800-01;Locus_id=Os01g0322800;Oryzabase Gene Symbol Synonym(s)=OsWD40-13;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK121409 (DDBJ%2C Best hit);ORF_evidence=Q94IP9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),LisH dimerisation motif (IPR006594),CTLH%2C C-terminal LisH motif (IPR006595),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J023132M16;Oryzabase=10694;Expression=AK121409;TENOR=Os01t0322800-01;KEGG=Os01t0322800-01
Chr01	irgsp1_rep	five_prime_UTR	12309348	12309435	.	-	.	Parent=Os01t0322800-01
Chr01	irgsp1_rep	CDS	12309307	12309347	.	-	0	Parent=Os01t0322800-01
Chr01	irgsp1_rep	CDS	12308644	12309007	.	-	1	Parent=Os01t0322800-01
Chr01	irgsp1_rep	CDS	12308495	12308543	.	-	0	Parent=Os01t0322800-01
Chr01	irgsp1_rep	CDS	12308284	12308367	.	-	2	Parent=Os01t0322800-01
Chr01	irgsp1_rep	CDS	12308075	12308178	.	-	2	Parent=Os01t0322800-01
Chr01	irgsp1_rep	CDS	12306724	12306810	.	-	0	Parent=Os01t0322800-01
Chr01	irgsp1_rep	CDS	12306594	12306647	.	-	0	Parent=Os01t0322800-01
Chr01	irgsp1_rep	CDS	12306317	12306412	.	-	0	Parent=Os01t0322800-01
Chr01	irgsp1_rep	CDS	12305702	12305829	.	-	0	Parent=Os01t0322800-01
Chr01	irgsp1_rep	CDS	12304993	12305119	.	-	1	Parent=Os01t0322800-01
Chr01	irgsp1_rep	CDS	12304824	12304883	.	-	0	Parent=Os01t0322800-01
Chr01	irgsp1_rep	CDS	12304619	12304726	.	-	0	Parent=Os01t0322800-01
Chr01	irgsp1_rep	CDS	12303892	12303992	.	-	0	Parent=Os01t0322800-01
Chr01	irgsp1_rep	CDS	12303753	12303804	.	-	1	Parent=Os01t0322800-01
Chr01	irgsp1_rep	CDS	12303537	12303635	.	-	0	Parent=Os01t0322800-01
Chr01	irgsp1_rep	three_prime_UTR	12303210	12303536	.	-	.	Parent=Os01t0322800-01
Chr01	irgsp1_rep	mRNA	12326546	12331707	.	+	.	ID=Os01t0323000-01;Name=Os01t0323000-01;Locus_id=Os01g0323000;Note=Similar to Ser Thr specific protein kinase-like protein.;Transcript_evidence=AK100396 (DDBJ%2C Best hit);ORF_evidence=B4FAE7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023086G18;Expression=AK100396;TENOR=Os01t0323000-01;KEGG=Os01t0323000-01
Chr01	irgsp1_rep	five_prime_UTR	12326546	12326897	.	+	.	Parent=Os01t0323000-01
Chr01	irgsp1_rep	five_prime_UTR	12327773	12327795	.	+	.	Parent=Os01t0323000-01
Chr01	irgsp1_rep	CDS	12327796	12328475	.	+	0	Parent=Os01t0323000-01
Chr01	irgsp1_rep	CDS	12328596	12328700	.	+	1	Parent=Os01t0323000-01
Chr01	irgsp1_rep	CDS	12328876	12328998	.	+	1	Parent=Os01t0323000-01
Chr01	irgsp1_rep	CDS	12329327	12329497	.	+	1	Parent=Os01t0323000-01
Chr01	irgsp1_rep	CDS	12329593	12329722	.	+	1	Parent=Os01t0323000-01
Chr01	irgsp1_rep	CDS	12330826	12331035	.	+	0	Parent=Os01t0323000-01
Chr01	irgsp1_rep	CDS	12331243	12331374	.	+	0	Parent=Os01t0323000-01
Chr01	irgsp1_rep	three_prime_UTR	12331375	12331707	.	+	.	Parent=Os01t0323000-01
Chr01	irgsp1_rep	mRNA	12328404	12331613	.	+	.	ID=Os01t0323000-02;Name=Os01t0323000-02;Locus_id=Os01g0323000;Note=Similar to BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1.;Transcript_evidence=AK059381 (DDBJ%2C Best hit);ORF_evidence=B4FAE7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-026-G02;Expression=AK059381;TENOR=Os01t0323000-02;KEGG=Os01t0323000-02
Chr01	irgsp1_rep	five_prime_UTR	12328404	12328404	.	+	.	Parent=Os01t0323000-02
Chr01	irgsp1_rep	CDS	12328405	12328475	.	+	0	Parent=Os01t0323000-02
Chr01	irgsp1_rep	CDS	12328596	12328700	.	+	1	Parent=Os01t0323000-02
Chr01	irgsp1_rep	CDS	12328876	12328998	.	+	1	Parent=Os01t0323000-02
Chr01	irgsp1_rep	CDS	12329327	12329497	.	+	1	Parent=Os01t0323000-02
Chr01	irgsp1_rep	CDS	12329593	12329722	.	+	1	Parent=Os01t0323000-02
Chr01	irgsp1_rep	CDS	12330826	12331035	.	+	0	Parent=Os01t0323000-02
Chr01	irgsp1_rep	CDS	12331243	12331374	.	+	0	Parent=Os01t0323000-02
Chr01	irgsp1_rep	three_prime_UTR	12331375	12331613	.	+	.	Parent=Os01t0323000-02
Chr01	irgsp1_rep	mRNA	12332795	12337225	.	-	.	ID=Os01t0323100-01;Name=Os01t0323100-01;Locus_id=Os01g0323100;CGSNL Gene Symbol=RLCK33;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 33;Oryzabase Gene Symbol Synonym(s)=OsPti1b%2C OsRLCK33;Oryzabase Gene Name Synonym(s)=Pto-interacting protein 1b%2C Receptor-like Cytoplasmic Kinase 33;Note=Similar to Pto kinase interactor 1.;Transcript_evidence=AK065231 (DDBJ%2C Best hit);ORF_evidence=NP_001105753.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J013002H11;Oryzabase=18113;Expression=AK065231;TENOR=Os01t0323100-01;KEGG=Os01t0323100-01
Chr01	irgsp1_rep	five_prime_UTR	12336880	12337225	.	-	.	Parent=Os01t0323100-01
Chr01	irgsp1_rep	five_prime_UTR	12336261	12336271	.	-	.	Parent=Os01t0323100-01
Chr01	irgsp1_rep	CDS	12336176	12336260	.	-	0	Parent=Os01t0323100-01
Chr01	irgsp1_rep	CDS	12334936	12335192	.	-	2	Parent=Os01t0323100-01
Chr01	irgsp1_rep	CDS	12334709	12334835	.	-	0	Parent=Os01t0323100-01
Chr01	irgsp1_rep	CDS	12334178	12334451	.	-	2	Parent=Os01t0323100-01
Chr01	irgsp1_rep	CDS	12333931	12334063	.	-	1	Parent=Os01t0323100-01
Chr01	irgsp1_rep	CDS	12333747	12333833	.	-	0	Parent=Os01t0323100-01
Chr01	irgsp1_rep	CDS	12333131	12333283	.	-	0	Parent=Os01t0323100-01
Chr01	irgsp1_rep	three_prime_UTR	12332795	12333130	.	-	.	Parent=Os01t0323100-01
Chr01	irgsp1_rep	mRNA	12344403	12350966	.	+	.	ID=Os01t0323300-01;Name=Os01t0323300-01;Locus_id=Os01g0323300;RAP-DB Gene Symbol Synonym(s)=OsCAF2;RAP-DB Gene Name Synonym(s)=CRS2-associated factor 2;Note=CRM domain-containing protein%2C Regulation of chloroplast development%2C Promotion of the splicing of chloroplast group IIA and IIB introns;Transcript_evidence=BT037792 (maize);ORF_evidence=Q657G7;GO=Molecular Function: RNA binding (GO:0003723);InterPro=YhbY-like superfamily (IPR035920),RNA-binding%2C CRM domain (IPR001890);Manual Curation=August 20%2C 2020;Literature_PMID=32811438;Oryzabase=23508;TENOR=Os01t0323300-00;KEGG=Os01t0323300-00;Subcellular location=chloroplast (GO:0009507)
Chr01	irgsp1_rep	five_prime_UTR	12344403	12344459	.	+	.	Parent=Os01t0323300-01
Chr01	irgsp1_rep	CDS	12344460	12345213	.	+	0	Parent=Os01t0323300-01
Chr01	irgsp1_rep	CDS	12346595	12346722	.	+	2	Parent=Os01t0323300-01
Chr01	irgsp1_rep	CDS	12347370	12347595	.	+	0	Parent=Os01t0323300-01
Chr01	irgsp1_rep	CDS	12349759	12349886	.	+	2	Parent=Os01t0323300-01
Chr01	irgsp1_rep	CDS	12350001	12350154	.	+	0	Parent=Os01t0323300-01
Chr01	irgsp1_rep	CDS	12350529	12350962	.	+	2	Parent=Os01t0323300-01
Chr01	irgsp1_rep	three_prime_UTR	12350963	12350966	.	+	.	Parent=Os01t0323300-01
Chr01	irgsp1_rep	mRNA	12351672	12353063	.	-	.	ID=Os01t0323500-01;Name=Os01t0323500-01;Locus_id=Os01g0323500;Note=Conserved hypothetical protein.;Transcript_evidence=AK107583 (DDBJ%2C Best hit);ORF_evidence=A2WP79 (UniProt);NIAS_FLcDNA=002-130-E06;Expression=AK107583;TENOR=Os01t0323500-01;KEGG=Os01t0323500-01
Chr01	irgsp1_rep	five_prime_UTR	12352736	12353063	.	-	.	Parent=Os01t0323500-01
Chr01	irgsp1_rep	CDS	12352316	12352735	.	-	0	Parent=Os01t0323500-01
Chr01	irgsp1_rep	three_prime_UTR	12351672	12352315	.	-	.	Parent=Os01t0323500-01
Chr01	irgsp1_rep	mRNA	12363841	12366314	.	-	.	ID=Os01t0323600-01;Name=Os01t0323600-01;Locus_id=Os01g0323600;RAP-DB Gene Symbol Synonym(s)=OsSAMS2;RAP-DB Gene Name Synonym(s)=S-Adenosyl-l-methionine synthetase 2;Oryzabase Gene Symbol Synonym(s)=OsSAM2%2C OsSAMS2%2C OS-SAMS2;Oryzabase Gene Name Synonym(s)=S-Adenosyl-l-methionine synthetase 2%2C S-adenosylmethionine synthetase 2;Note=S-adenosyl-l-methionine synthetase%2C Essential for histone H3K4me3 and DNA methylation%2C Regulation of gene expression related to flowering;Transcript_evidence=AK071516;ORF_evidence=P93438;GO=Biological Process: S-adenosylmethionine biosynthetic process (GO:0006556),Molecular Function: methionine adenosyltransferase activity (GO:0004478),Molecular Function: ATP binding (GO:0005524);InterPro=S-adenosylmethionine synthetase superfamily (IPR022636),S-adenosylmethionine synthetase (IPR002133),S-adenosylmethionine synthetase%2C N-terminal (IPR022628),S-adenosylmethionine synthetase%2C central domain (IPR022629),S-adenosylmethionine synthetase%2C C-terminal (IPR022630),S-adenosylmethionine synthetase%2C conserved site (IPR022631);NIAS_FLcDNA=J023097D07;Manual Curation=September 2%2C 2020;Literature_PMID=21757254;Oryzabase=11131;TENOR=Os01t0323600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	12366195	12366314	.	-	.	Parent=Os01t0323600-01
Chr01	irgsp1_rep	five_prime_UTR	12365471	12365483	.	-	.	Parent=Os01t0323600-01
Chr01	irgsp1_rep	CDS	12364286	12365470	.	-	0	Parent=Os01t0323600-01
Chr01	irgsp1_rep	three_prime_UTR	12363841	12364285	.	-	.	Parent=Os01t0323600-01
Chr01	irgsp1_rep	mRNA	12363862	12365491	.	+	.	ID=Os01t0323775-00;Name=Os01t0323775-00;Locus_id=Os01g0323775;Note=Hypothetical protein.;Transcript_evidence=tplb0048c02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0323775-00
Chr01	irgsp1_rep	five_prime_UTR	12363862	12364225	.	+	.	Parent=Os01t0323775-00
Chr01	irgsp1_rep	CDS	12364226	12365491	.	+	0	Parent=Os01t0323775-00
Chr01	irgsp1_rep	mRNA	12371544	12376437	.	-	.	ID=Os01t0323950-00;Name=Os01t0323950-00;Locus_id=Os01g0323950;Note=Similar to Glycine-rich protein 2b.;Transcript_evidence=BT088261 (DDBJ);ORF_evidence=B6TP60 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Zinc finger%2C CCHC retroviral-type (IPR013084);TENOR=Os01t0323950-00
Chr01	irgsp1_rep	five_prime_UTR	12376163	12376437	.	-	.	Parent=Os01t0323950-00
Chr01	irgsp1_rep	five_prime_UTR	12371964	12372030	.	-	.	Parent=Os01t0323950-00
Chr01	irgsp1_rep	CDS	12371544	12371963	.	-	0	Parent=Os01t0323950-00
Chr01	irgsp1_rep	mRNA	12407462	12408003	.	-	.	ID=Os01t0324400-01;Name=Os01t0324400-01;Locus_id=Os01g0324400;Note=Hypothetical conserved gene.;Transcript_evidence=AK111299 (DDBJ%2C Best hit);ORF_evidence=Q657G4 (UniProt);NIAS_FLcDNA=002-181-B01;TENOR=Os01t0324400-01;KEGG=Os01t0324400-01
Chr01	irgsp1_rep	five_prime_UTR	12407898	12408003	.	-	.	Parent=Os01t0324400-01
Chr01	irgsp1_rep	CDS	12407724	12407897	.	-	0	Parent=Os01t0324400-01
Chr01	irgsp1_rep	three_prime_UTR	12407462	12407723	.	-	.	Parent=Os01t0324400-01
Chr01	irgsp1_rep	mRNA	12403541	12407991	.	-	.	ID=Os01t0324400-02;Name=Os01t0324400-02;Locus_id=Os01g0324400;Note=Protein of unknown function DUF3615 domain containing protein.;Transcript_evidence=AK102854 (DDBJ%2C Best hit);ORF_evidence=B9EW49 (UniProt);InterPro=Protein of unknown function DUF3615 (IPR022059);NIAS_FLcDNA=J033110L02;Expression=AK102854;TENOR=Os01t0324400-02;KEGG=Os01t0324400-02
Chr01	irgsp1_rep	five_prime_UTR	12406074	12407991	.	-	.	Parent=Os01t0324400-02
Chr01	irgsp1_rep	CDS	12405993	12406073	.	-	0	Parent=Os01t0324400-02
Chr01	irgsp1_rep	CDS	12405467	12405662	.	-	0	Parent=Os01t0324400-02
Chr01	irgsp1_rep	CDS	12403683	12404089	.	-	2	Parent=Os01t0324400-02
Chr01	irgsp1_rep	three_prime_UTR	12403541	12403682	.	-	.	Parent=Os01t0324400-02
Chr01	irgsp1_rep	mRNA	12403525	12407716	.	-	.	ID=Os01t0324400-03;Name=Os01t0324400-03;Locus_id=Os01g0324400;Note=Similar to cDNA clone:J033110L02%2C full insert sequence.;Transcript_evidence=AK102490 (DDBJ%2C Best hit);ORF_evidence=B7ETQ3 (UniProt);NIAS_FLcDNA=J033094O03;Expression=AK102490;TENOR=Os01t0324400-03;KEGG=Os01t0324400-03
Chr01	irgsp1_rep	five_prime_UTR	12406956	12407716	.	-	.	Parent=Os01t0324400-03
Chr01	irgsp1_rep	CDS	12406716	12406955	.	-	0	Parent=Os01t0324400-03
Chr01	irgsp1_rep	CDS	12406045	12406062	.	-	0	Parent=Os01t0324400-03
Chr01	irgsp1_rep	three_prime_UTR	12405993	12406044	.	-	.	Parent=Os01t0324400-03
Chr01	irgsp1_rep	three_prime_UTR	12405467	12405662	.	-	.	Parent=Os01t0324400-03
Chr01	irgsp1_rep	three_prime_UTR	12403525	12404089	.	-	.	Parent=Os01t0324400-03
Chr01	irgsp1_rep	mRNA	12499923	12504190	.	+	.	ID=Os01t0326000-01;Name=Os01t0326000-01;Locus_id=Os01g0326000;Oryzabase Gene Symbol Synonym(s)=prx12%2C PRX12%2C OsPRX12;Oryzabase Gene Name Synonym(s)=class III peroxidase 12;Note=Similar to Peroxidase (Fragment).;Transcript_evidence=AK068894 (DDBJ%2C Best hit);ORF_evidence=Q5U1T1 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J023001H23;Oryzabase=14540;Expression=AK068894;TENOR=Os01t0326000-01;KEGG=Os01t0326000-01
Chr01	irgsp1_rep	five_prime_UTR	12499923	12499995	.	+	.	Parent=Os01t0326000-01
Chr01	irgsp1_rep	CDS	12499996	12500232	.	+	0	Parent=Os01t0326000-01
Chr01	irgsp1_rep	CDS	12503027	12503461	.	+	0	Parent=Os01t0326000-01
Chr01	irgsp1_rep	CDS	12503555	12503956	.	+	0	Parent=Os01t0326000-01
Chr01	irgsp1_rep	three_prime_UTR	12503957	12504190	.	+	.	Parent=Os01t0326000-01
Chr01	irgsp1_rep	mRNA	12503020	12504209	.	+	.	ID=Os01t0326000-02;Name=Os01t0326000-02;Locus_id=Os01g0326000;Oryzabase Gene Symbol Synonym(s)=prx12%2C PRX12%2C OsPRX12;Oryzabase Gene Name Synonym(s)=class III peroxidase 12;Note=Similar to Class III peroxidase 13.;Transcript_evidence=AK061371 (DDBJ%2C Best hit);ORF_evidence=Q5U1T1 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793);NIAS_FLcDNA=006-304-E09;Oryzabase=14540;Expression=AK061371;TENOR=Os01t0326000-02;KEGG=Os01t0326000-02
Chr01	irgsp1_rep	five_prime_UTR	12503020	12503020	.	+	.	Parent=Os01t0326000-02
Chr01	irgsp1_rep	CDS	12503021	12503461	.	+	0	Parent=Os01t0326000-02
Chr01	irgsp1_rep	CDS	12503555	12503956	.	+	0	Parent=Os01t0326000-02
Chr01	irgsp1_rep	three_prime_UTR	12503957	12504209	.	+	.	Parent=Os01t0326000-02
Chr01	irgsp1_rep	mRNA	12509590	12510760	.	+	.	ID=Os01t0326100-01;Name=Os01t0326100-01;Locus_id=Os01g0326100;Oryzabase Gene Symbol Synonym(s)=RP-2 or RP-4%2C prx13;Oryzabase Gene Name Synonym(s)=peroxidase component RP-2 or RP-4%2C class III peroxidase 13;Note=Similar to Peroxidase component PR-2 and/or 4 (Fragment).;Transcript_evidence=AK067102 (DDBJ%2C Best hit);ORF_evidence=Q5U1T0 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J013095D16;Oryzabase=13717;Expression=AK067102;TENOR=Os01t0326100-01;KEGG=Os01t0326100-01
Chr01	irgsp1_rep	five_prime_UTR	12509590	12509622	.	+	.	Parent=Os01t0326100-01
Chr01	irgsp1_rep	CDS	12509623	12509904	.	+	0	Parent=Os01t0326100-01
Chr01	irgsp1_rep	three_prime_UTR	12509905	12510760	.	+	.	Parent=Os01t0326100-01
Chr01	irgsp1_rep	mRNA	12510619	12511125	.	+	.	ID=Os01t0326100-02;Name=Os01t0326100-02;Locus_id=Os01g0326100;Oryzabase Gene Symbol Synonym(s)=RP-2 or RP-4%2C prx13;Oryzabase Gene Name Synonym(s)=peroxidase component RP-2 or RP-4%2C class III peroxidase 13;Note=Non-protein coding transcript.;Transcript_evidence=AK062793 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-107-C05;Oryzabase=13717;TENOR=Os01t0326100-02
Chr01	irgsp1_rep	exon	12510619	12511125	.	+	.	Parent=Os01t0326100-02
Chr01	irgsp1_rep	mRNA	12517993	12519238	.	+	.	ID=Os01t0326300-01;Name=Os01t0326300-01;Locus_id=Os01g0326300;Oryzabase Gene Symbol Synonym(s)=POD2%2C OsPOD2%2C PRX13%2C OSPRX13;Oryzabase Gene Name Synonym(s)=peroxidase%2C Peroxidase 71;Note=Haem peroxidase%2C plant/fungal/bacterial family protein.;Transcript_evidence=AK058883 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793);NIAS_FLcDNA=001-007-B11;Oryzabase=14259;TENOR=Os01t0326300-01;KEGG=Os01t0326300-01
Chr01	irgsp1_rep	CDS	12517993	12518415	.	+	0	Parent=Os01t0326300-01
Chr01	irgsp1_rep	CDS	12518518	12518937	.	+	0	Parent=Os01t0326300-01
Chr01	irgsp1_rep	three_prime_UTR	12518938	12519238	.	+	.	Parent=Os01t0326300-01
Chr01	irgsp1_rep	mRNA	12551333	12557268	.	+	.	ID=Os01t0327000-01;Name=Os01t0327000-01;Locus_id=Os01g0327000;Oryzabase Gene Symbol Synonym(s)=prx14;Oryzabase Gene Name Synonym(s)=class III peroxidase 14;Note=Similar to Class III peroxidase 14.;Transcript_evidence=AK121616 (DDBJ%2C Best hit);ORF_evidence=Q5U1S9 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J033044C11;Oryzabase=14541;TENOR=Os01t0327000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	12551333	12551393	.	+	.	Parent=Os01t0327000-01
Chr01	irgsp1_rep	CDS	12551394	12551681	.	+	0	Parent=Os01t0327000-01
Chr01	irgsp1_rep	three_prime_UTR	12551682	12557268	.	+	.	Parent=Os01t0327000-01
Chr01	irgsp1_rep	mRNA	12564283	12570030	.	+	.	ID=Os01t0327100-01;Name=Os01t0327100-01;Locus_id=Os01g0327100;Oryzabase Gene Symbol Synonym(s)=prx15;Oryzabase Gene Name Synonym(s)=class III peroxidase 15;Note=Haem peroxidase family protein.;Transcript_evidence=AK070715 (DDBJ%2C Best hit),AK099187 (DDBJ%2C Best hit);ORF_evidence=Q5I3F0 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J023058L02,J023107P11;Oryzabase=14542;TENOR=Os01t0327100-01
Chr01	irgsp1_rep	five_prime_UTR	12564283	12564355	.	+	.	Parent=Os01t0327100-01
Chr01	irgsp1_rep	CDS	12564356	12564580	.	+	0	Parent=Os01t0327100-01
Chr01	irgsp1_rep	CDS	12568420	12568833	.	+	0	Parent=Os01t0327100-01
Chr01	irgsp1_rep	CDS	12569255	12569677	.	+	0	Parent=Os01t0327100-01
Chr01	irgsp1_rep	three_prime_UTR	12569678	12570030	.	+	.	Parent=Os01t0327100-01
Chr01	irgsp1_rep	mRNA	12568431	12569866	.	+	.	ID=Os01t0327100-02;Name=Os01t0327100-02;Locus_id=Os01g0327100;Oryzabase Gene Symbol Synonym(s)=prx15;Oryzabase Gene Name Synonym(s)=class III peroxidase 15;Note=Similar to Peroxidase 8.;Transcript_evidence=AK059977 (DDBJ%2C Best hit);ORF_evidence=Q5I3F0 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793);NIAS_FLcDNA=006-212-B01;Oryzabase=14542;Expression=AK059977;TENOR=Os01t0327100-02;KEGG=Os01t0327100-02
Chr01	irgsp1_rep	five_prime_UTR	12568431	12568431	.	+	.	Parent=Os01t0327100-02
Chr01	irgsp1_rep	CDS	12568432	12568833	.	+	0	Parent=Os01t0327100-02
Chr01	irgsp1_rep	CDS	12569255	12569677	.	+	0	Parent=Os01t0327100-02
Chr01	irgsp1_rep	three_prime_UTR	12569678	12569866	.	+	.	Parent=Os01t0327100-02
Chr01	irgsp1_rep	mRNA	12564382	12569579	.	-	.	ID=Os01t0327250-00;Name=Os01t0327250-00;Locus_id=Os01g0327250;Note=Hypothetical protein.;Transcript_evidence=tplb0038a01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0327250-00
Chr01	irgsp1_rep	five_prime_UTR	12569579	12569579	.	-	.	Parent=Os01t0327250-00
Chr01	irgsp1_rep	CDS	12569228	12569578	.	-	0	Parent=Os01t0327250-00
Chr01	irgsp1_rep	CDS	12568432	12568809	.	-	0	Parent=Os01t0327250-00
Chr01	irgsp1_rep	three_prime_UTR	12568419	12568431	.	-	.	Parent=Os01t0327250-00
Chr01	irgsp1_rep	three_prime_UTR	12564382	12564579	.	-	.	Parent=Os01t0327250-00
Chr01	irgsp1_rep	mRNA	12578189	12582256	.	+	.	ID=Os01t0327400-01;Name=Os01t0327400-01;Locus_id=Os01g0327400;Oryzabase Gene Symbol Synonym(s)=prx16%2C OsPOD1%2C POD1;Oryzabase Gene Name Synonym(s)=class III peroxidase 16%2C Peroxidase 1;Note=Similar to Peroxidase (Fragment).;Transcript_evidence=AK068063 (DDBJ%2C Best hit),AK099241 (DDBJ%2C Best hit);ORF_evidence=B4FSK9 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J013129I12,J013116O19;Oryzabase=14543;TENOR=Os01t0327400-01
Chr01	irgsp1_rep	five_prime_UTR	12578189	12578229	.	+	.	Parent=Os01t0327400-01
Chr01	irgsp1_rep	CDS	12578230	12578442	.	+	0	Parent=Os01t0327400-01
Chr01	irgsp1_rep	CDS	12581162	12582004	.	+	0	Parent=Os01t0327400-01
Chr01	irgsp1_rep	three_prime_UTR	12582005	12582256	.	+	.	Parent=Os01t0327400-01
Chr01	irgsp1_rep	mRNA	12582768	12583460	.	-	.	ID=Os01t0327500-01;Name=Os01t0327500-01;Locus_id=Os01g0327500;Note=Conserved hypothetical protein.;Transcript_evidence=AK107756 (DDBJ%2C Best hit);ORF_evidence=A2WPA7 (UniProt);NIAS_FLcDNA=002-133-A04;Expression=AK107756;TENOR=Os01t0327500-01;KEGG=Os01t0327500-01
Chr01	irgsp1_rep	five_prime_UTR	12583380	12583460	.	-	.	Parent=Os01t0327500-01
Chr01	irgsp1_rep	CDS	12583038	12583379	.	-	0	Parent=Os01t0327500-01
Chr01	irgsp1_rep	three_prime_UTR	12582768	12583037	.	-	.	Parent=Os01t0327500-01
Chr01	irgsp1_rep	mRNA	12584890	12594761	.	-	.	ID=Os01t0327600-01;Name=Os01t0327600-01;Locus_id=Os01g0327600;Note=Conserved hypothetical protein.;Transcript_evidence=AK121799 (DDBJ%2C Best hit);ORF_evidence=Q5ZDE5 (UniProt);NIAS_FLcDNA=J033096J16;Expression=AK121799;TENOR=Os01t0327600-01;KEGG=Os01t0327600-01
Chr01	irgsp1_rep	five_prime_UTR	12594525	12594761	.	-	.	Parent=Os01t0327600-01
Chr01	irgsp1_rep	CDS	12594378	12594524	.	-	0	Parent=Os01t0327600-01
Chr01	irgsp1_rep	CDS	12594130	12594164	.	-	0	Parent=Os01t0327600-01
Chr01	irgsp1_rep	CDS	12593507	12593598	.	-	1	Parent=Os01t0327600-01
Chr01	irgsp1_rep	CDS	12593395	12593429	.	-	2	Parent=Os01t0327600-01
Chr01	irgsp1_rep	three_prime_UTR	12591405	12593394	.	-	.	Parent=Os01t0327600-01
Chr01	irgsp1_rep	three_prime_UTR	12590954	12591283	.	-	.	Parent=Os01t0327600-01
Chr01	irgsp1_rep	three_prime_UTR	12590622	12590839	.	-	.	Parent=Os01t0327600-01
Chr01	irgsp1_rep	three_prime_UTR	12590474	12590542	.	-	.	Parent=Os01t0327600-01
Chr01	irgsp1_rep	three_prime_UTR	12590192	12590397	.	-	.	Parent=Os01t0327600-01
Chr01	irgsp1_rep	three_prime_UTR	12588976	12589039	.	-	.	Parent=Os01t0327600-01
Chr01	irgsp1_rep	three_prime_UTR	12588661	12588865	.	-	.	Parent=Os01t0327600-01
Chr01	irgsp1_rep	three_prime_UTR	12588469	12588580	.	-	.	Parent=Os01t0327600-01
Chr01	irgsp1_rep	three_prime_UTR	12587739	12588218	.	-	.	Parent=Os01t0327600-01
Chr01	irgsp1_rep	three_prime_UTR	12586601	12586887	.	-	.	Parent=Os01t0327600-01
Chr01	irgsp1_rep	three_prime_UTR	12586053	12586296	.	-	.	Parent=Os01t0327600-01
Chr01	irgsp1_rep	three_prime_UTR	12585872	12585945	.	-	.	Parent=Os01t0327600-01
Chr01	irgsp1_rep	three_prime_UTR	12585428	12585563	.	-	.	Parent=Os01t0327600-01
Chr01	irgsp1_rep	three_prime_UTR	12584890	12585262	.	-	.	Parent=Os01t0327600-01
Chr01	irgsp1_rep	mRNA	12584827	12594554	.	-	.	ID=Os01t0327600-02;Name=Os01t0327600-02;Locus_id=Os01g0327600;Note=Hypothetical conserved gene.;Transcript_evidence=AK120216 (DDBJ%2C Best hit);ORF_evidence=Q5ZDE5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=BEACH domain (IPR000409),Protein kinase%2C catalytic domain (IPR000719),WD40 repeat (IPR001680),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),Serine/threonine-protein kinase-like domain (IPR017442),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J013040I09;Expression=AK120216;TENOR=Os01t0327600-02;KEGG=Os01t0327600-02
Chr01	irgsp1_rep	five_prime_UTR	12594525	12594554	.	-	.	Parent=Os01t0327600-02
Chr01	irgsp1_rep	CDS	12594378	12594524	.	-	0	Parent=Os01t0327600-02
Chr01	irgsp1_rep	CDS	12594130	12594164	.	-	0	Parent=Os01t0327600-02
Chr01	irgsp1_rep	CDS	12593507	12593578	.	-	1	Parent=Os01t0327600-02
Chr01	irgsp1_rep	CDS	12591405	12593429	.	-	1	Parent=Os01t0327600-02
Chr01	irgsp1_rep	CDS	12590954	12591283	.	-	1	Parent=Os01t0327600-02
Chr01	irgsp1_rep	CDS	12590622	12590839	.	-	1	Parent=Os01t0327600-02
Chr01	irgsp1_rep	CDS	12590474	12590542	.	-	2	Parent=Os01t0327600-02
Chr01	irgsp1_rep	CDS	12590192	12590397	.	-	2	Parent=Os01t0327600-02
Chr01	irgsp1_rep	CDS	12588976	12589039	.	-	0	Parent=Os01t0327600-02
Chr01	irgsp1_rep	CDS	12588661	12588865	.	-	2	Parent=Os01t0327600-02
Chr01	irgsp1_rep	CDS	12588469	12588580	.	-	1	Parent=Os01t0327600-02
Chr01	irgsp1_rep	CDS	12587739	12588218	.	-	0	Parent=Os01t0327600-02
Chr01	irgsp1_rep	CDS	12586601	12586887	.	-	0	Parent=Os01t0327600-02
Chr01	irgsp1_rep	CDS	12586053	12586296	.	-	1	Parent=Os01t0327600-02
Chr01	irgsp1_rep	CDS	12585872	12585945	.	-	0	Parent=Os01t0327600-02
Chr01	irgsp1_rep	CDS	12585428	12585563	.	-	1	Parent=Os01t0327600-02
Chr01	irgsp1_rep	CDS	12585107	12585262	.	-	0	Parent=Os01t0327600-02
Chr01	irgsp1_rep	three_prime_UTR	12584827	12585106	.	-	.	Parent=Os01t0327600-02
Chr01	irgsp1_rep	mRNA	12615286	12617245	.	-	.	ID=Os01t0327900-00;Name=Os01t0327900-00;Locus_id=Os01g0327900;Oryzabase Gene Symbol Synonym(s)=OsFbox008%2C OsFbox8%2C Os_F0329;Oryzabase Gene Name Synonym(s)=F-box protein 8;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B7ESQ3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Protein of unknown function DUF295 (IPR005174),F-box domain%2C Skp2-like (IPR022364);Oryzabase=16811;TENOR=Os01t0327900-00;KEGG=Os01t0327900-00
Chr01	irgsp1_rep	CDS	12616079	12617245	.	-	0	Parent=Os01t0327900-00
Chr01	irgsp1_rep	CDS	12615286	12615378	.	-	0	Parent=Os01t0327900-00
Chr01	irgsp1_rep	mRNA	12636445	12640675	.	-	.	ID=Os01t0328300-01;Name=Os01t0328300-01;Locus_id=Os01g0328300;Oryzabase Gene Symbol Synonym(s)=OsFbox009%2C OsFbox9%2C Os_F0616;Oryzabase Gene Name Synonym(s)=F-box protein 9;Note=Similar to cDNA clone:J033084P10%2C full insert sequence.;Transcript_evidence=AK071771 (DDBJ%2C Best hit);ORF_evidence=B7ESQ3 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023108N02;Oryzabase=16812;TENOR=Os01t0328300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	12640451	12640675	.	-	.	Parent=Os01t0328300-01
Chr01	irgsp1_rep	five_prime_UTR	12640247	12640322	.	-	.	Parent=Os01t0328300-01
Chr01	irgsp1_rep	CDS	12638977	12640246	.	-	0	Parent=Os01t0328300-01
Chr01	irgsp1_rep	CDS	12638711	12638721	.	-	2	Parent=Os01t0328300-01
Chr01	irgsp1_rep	three_prime_UTR	12636445	12638710	.	-	.	Parent=Os01t0328300-01
Chr01	irgsp1_rep	mRNA	12637330	12640601	.	-	.	ID=Os01t0328300-02;Name=Os01t0328300-02;Locus_id=Os01g0328300;Oryzabase Gene Symbol Synonym(s)=OsFbox009%2C OsFbox9%2C Os_F0616;Oryzabase Gene Name Synonym(s)=F-box protein 9;Note=Hypothetical conserved gene.;Transcript_evidence=AK064025 (DDBJ%2C Best hit);ORF_evidence=B7ESQ3 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=001-125-A10;Oryzabase=16812;Expression=AK064025;TENOR=Os01t0328300-02;KEGG=Os01t0328300-02
Chr01	irgsp1_rep	five_prime_UTR	12640451	12640601	.	-	.	Parent=Os01t0328300-02
Chr01	irgsp1_rep	five_prime_UTR	12640247	12640322	.	-	.	Parent=Os01t0328300-02
Chr01	irgsp1_rep	CDS	12639699	12640246	.	-	0	Parent=Os01t0328300-02
Chr01	irgsp1_rep	CDS	12637432	12638149	.	-	1	Parent=Os01t0328300-02
Chr01	irgsp1_rep	three_prime_UTR	12637330	12637431	.	-	.	Parent=Os01t0328300-02
Chr01	irgsp1_rep	mRNA	12637549	12640586	.	-	.	ID=Os01t0328300-03;Name=Os01t0328300-03;Locus_id=Os01g0328300;Oryzabase Gene Symbol Synonym(s)=OsFbox009%2C OsFbox9%2C Os_F0616;Oryzabase Gene Name Synonym(s)=F-box protein 9;Note=Protein of unknown function DUF295 domain containing protein.;Transcript_evidence=AK102126 (DDBJ%2C Best hit);ORF_evidence=B9EW56 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033084P10;Oryzabase=16812;TENOR=Os01t0328300-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	12640451	12640586	.	-	.	Parent=Os01t0328300-03
Chr01	irgsp1_rep	five_prime_UTR	12640247	12640322	.	-	.	Parent=Os01t0328300-03
Chr01	irgsp1_rep	CDS	12638977	12640246	.	-	0	Parent=Os01t0328300-03
Chr01	irgsp1_rep	CDS	12638711	12638721	.	-	2	Parent=Os01t0328300-03
Chr01	irgsp1_rep	three_prime_UTR	12637549	12638710	.	-	.	Parent=Os01t0328300-03
Chr01	irgsp1_rep	mRNA	12645608	12646401	.	-	.	ID=Os01t0328400-01;Name=Os01t0328400-01;Locus_id=Os01g0328400;CGSNL Gene Symbol=UBQ5;CGSNL Gene Name=UBIQUITIN 5;Oryzabase Gene Symbol Synonym(s)=RPS27a%2C OsUBQ5%2C OsRPS27a;Oryzabase Gene Name Synonym(s)=Ubiquitin 5%2C Monoubiquitin-tail protein 1%2C ribosomal protein S27%2C ribosomal protein small subunit 27;Note=Ubiquitin.;Transcript_evidence=AK061988 (DDBJ%2C Best hit);ORF_evidence=Q9ARZ9 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735),Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin (IPR000626),Ribosomal protein S27a (IPR002906),Ubiquitin conserved site (IPR019954),Ubiquitin supergroup (IPR019955),Ubiquitin subgroup (IPR019956);NIAS_FLcDNA=001-043-B08;Oryzabase=15531;Expression=AK061988;TENOR=Os01t0328400-01;KEGG=Os01t0328400-01
Chr01	irgsp1_rep	five_prime_UTR	12646300	12646401	.	-	.	Parent=Os01t0328400-01
Chr01	irgsp1_rep	CDS	12645832	12646299	.	-	0	Parent=Os01t0328400-01
Chr01	irgsp1_rep	three_prime_UTR	12645608	12645831	.	-	.	Parent=Os01t0328400-01
Chr01	irgsp1_rep	mRNA	12646586	12650012	.	+	.	ID=Os01t0328500-01;Name=Os01t0328500-01;Locus_id=Os01g0328500;Note=Bucentaur or craniofacial development family protein.;Transcript_evidence=AK058517 (DDBJ%2C Best hit);ORF_evidence=NP_001148731.1 (RefSeq);InterPro=Craniofacial development protein 1/Bucentaur (IPR011421);NIAS_FLcDNA=001-016-H02;Expression=AK058517;TENOR=Os01t0328500-01;KEGG=Os01t0328500-01
Chr01	irgsp1_rep	five_prime_UTR	12646586	12646726	.	+	.	Parent=Os01t0328500-01
Chr01	irgsp1_rep	CDS	12646727	12646766	.	+	0	Parent=Os01t0328500-01
Chr01	irgsp1_rep	CDS	12647772	12647852	.	+	2	Parent=Os01t0328500-01
Chr01	irgsp1_rep	CDS	12648478	12648602	.	+	2	Parent=Os01t0328500-01
Chr01	irgsp1_rep	CDS	12648714	12648893	.	+	0	Parent=Os01t0328500-01
Chr01	irgsp1_rep	CDS	12649360	12649728	.	+	0	Parent=Os01t0328500-01
Chr01	irgsp1_rep	three_prime_UTR	12649729	12650012	.	+	.	Parent=Os01t0328500-01
Chr01	irgsp1_rep	mRNA	12650573	12654287	.	+	.	ID=Os01t0328600-01;Name=Os01t0328600-01;Locus_id=Os01g0328600;Note=Similar to cyclase/dehydrase.;Transcript_evidence=AK289214 (DDBJ%2C Best hit);ORF_evidence=NP_001148441.1 (RefSeq);NIAS_FLcDNA=J100061G18;TENOR=Os01t0328600-01;KEGG=Os01t0328600-01
Chr01	irgsp1_rep	five_prime_UTR	12650573	12650612	.	+	.	Parent=Os01t0328600-01
Chr01	irgsp1_rep	CDS	12650613	12650872	.	+	0	Parent=Os01t0328600-01
Chr01	irgsp1_rep	CDS	12651737	12651944	.	+	1	Parent=Os01t0328600-01
Chr01	irgsp1_rep	three_prime_UTR	12651945	12652584	.	+	.	Parent=Os01t0328600-01
Chr01	irgsp1_rep	three_prime_UTR	12653111	12653206	.	+	.	Parent=Os01t0328600-01
Chr01	irgsp1_rep	three_prime_UTR	12653284	12653336	.	+	.	Parent=Os01t0328600-01
Chr01	irgsp1_rep	three_prime_UTR	12653647	12653695	.	+	.	Parent=Os01t0328600-01
Chr01	irgsp1_rep	three_prime_UTR	12653791	12653838	.	+	.	Parent=Os01t0328600-01
Chr01	irgsp1_rep	three_prime_UTR	12653940	12654287	.	+	.	Parent=Os01t0328600-01
Chr01	irgsp1_rep	mRNA	12655016	12658349	.	-	.	ID=Os01t0328700-01;Name=Os01t0328700-01;Locus_id=Os01g0328700;Note=FAD-dependent pyridine nucleotide-disulphide oxidoreductase domain containing protein.;Transcript_evidence=AK066632 (DDBJ%2C Best hit);ORF_evidence=C5XIY9 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: cytoplasm (GO:0005737),Molecular Function: dihydrolipoyl dehydrogenase activity (GO:0004148),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on a sulfur group of donors%2C NAD or NADP as acceptor (GO:0016668),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Pyridine nucleotide-disulphide oxidoreductase%2C NAD-binding domain (IPR001327),Pyridine nucleotide-disulphide oxidoreductase%2C dimerisation (IPR004099),Dihydrolipoamide dehydrogenase (IPR006258),Pyridine nucleotide-disulphide oxidoreductase%2C class I%2C active site (IPR012999),FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR013027),FAD/NAD-linked reductase%2C dimerisation (IPR016156),Pyridine nucleotide-disulphide oxidoreductase%2C FAD/NAD(P)-binding domain (IPR023753);NIAS_FLcDNA=J013072D16;Expression=AK066632;TENOR=Os01t0328700-01;KEGG=Os01t0328700-01 (EC:1.8.1.4)
Chr01	irgsp1_rep	five_prime_UTR	12658268	12658349	.	-	.	Parent=Os01t0328700-01
Chr01	irgsp1_rep	CDS	12658007	12658267	.	-	0	Parent=Os01t0328700-01
Chr01	irgsp1_rep	CDS	12655199	12656449	.	-	0	Parent=Os01t0328700-01
Chr01	irgsp1_rep	three_prime_UTR	12655016	12655198	.	-	.	Parent=Os01t0328700-01
Chr01	irgsp1_rep	mRNA	12667369	12672739	.	-	.	ID=Os01t0328900-01;Name=Os01t0328900-01;Locus_id=Os01g0328900;Note=Glycosyl transferase%2C family 31 domain containing protein.;Transcript_evidence=AK101169 (DDBJ%2C Best hit);ORF_evidence=NP_001150985.1 (RefSeq);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: sugar binding (GO:0005529),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Galectin%2C carbohydrate recognition domain (IPR001079),Glycosyl transferase%2C family 31 (IPR002659),Concanavalin A-like lectin/glucanase (IPR008985),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320);NIAS_FLcDNA=J033028K02;Expression=AK101169;TENOR=Os01t0328900-01;KEGG=Os01t0328900-01
Chr01	irgsp1_rep	five_prime_UTR	12672683	12672739	.	-	.	Parent=Os01t0328900-01
Chr01	irgsp1_rep	CDS	12672030	12672682	.	-	0	Parent=Os01t0328900-01
Chr01	irgsp1_rep	CDS	12670788	12671037	.	-	1	Parent=Os01t0328900-01
Chr01	irgsp1_rep	CDS	12670435	12670710	.	-	0	Parent=Os01t0328900-01
Chr01	irgsp1_rep	CDS	12669452	12669580	.	-	0	Parent=Os01t0328900-01
Chr01	irgsp1_rep	CDS	12668107	12668283	.	-	0	Parent=Os01t0328900-01
Chr01	irgsp1_rep	CDS	12667918	12668025	.	-	0	Parent=Os01t0328900-01
Chr01	irgsp1_rep	CDS	12667606	12667812	.	-	0	Parent=Os01t0328900-01
Chr01	irgsp1_rep	three_prime_UTR	12667369	12667605	.	-	.	Parent=Os01t0328900-01
Chr01	irgsp1_rep	mRNA	12677044	12683455	.	-	.	ID=Os01t0329000-01;Name=Os01t0329000-01;Locus_id=Os01g0329000;Oryzabase Gene Symbol Synonym(s)=GPAT;Oryzabase Gene Name Synonym(s)=glycerol-3-phosphate acyltransferase;Note=Phospholipid/glycerol acyltransferase domain containing protein.;Transcript_evidence=AK071961 (DDBJ%2C Best hit);ORF_evidence=Q5ZDR8 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Phospholipid/glycerol acyltransferase (IPR002123);NIAS_FLcDNA=J013077G18;Oryzabase=21978;Expression=AK071961;TENOR=Os01t0329000-01;KEGG=Os01t0329000-01
Chr01	irgsp1_rep	five_prime_UTR	12683429	12683455	.	-	.	Parent=Os01t0329000-01
Chr01	irgsp1_rep	CDS	12682676	12683428	.	-	0	Parent=Os01t0329000-01
Chr01	irgsp1_rep	CDS	12677382	12678260	.	-	0	Parent=Os01t0329000-01
Chr01	irgsp1_rep	CDS	12677239	12677304	.	-	0	Parent=Os01t0329000-01
Chr01	irgsp1_rep	three_prime_UTR	12677044	12677238	.	-	.	Parent=Os01t0329000-01
Chr01	irgsp1_rep	mRNA	12677372	12683262	.	+	.	ID=Os01t0329075-00;Name=Os01t0329075-00;Locus_id=Os01g0329075;Note=Hypothetical protein.;Transcript_evidence=tplb0038i08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0329075-00
Chr01	irgsp1_rep	five_prime_UTR	12677372	12677372	.	+	.	Parent=Os01t0329075-00
Chr01	irgsp1_rep	CDS	12677373	12678032	.	+	0	Parent=Os01t0329075-00
Chr01	irgsp1_rep	three_prime_UTR	12678033	12678251	.	+	.	Parent=Os01t0329075-00
Chr01	irgsp1_rep	three_prime_UTR	12682664	12683262	.	+	.	Parent=Os01t0329075-00
Chr01	irgsp1_rep	mRNA	12696476	12696689	.	-	.	ID=Os01t0329150-00;Name=Os01t0329150-00;Locus_id=Os01g0329150;Note=Non-protein coding transcript.;Transcript_evidence=EU949494 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0329150-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	exon	12696476	12696689	.	-	.	Parent=Os01t0329150-00
Chr01	irgsp1_rep	mRNA	12701744	12704532	.	+	.	ID=Os01t0329300-01;Name=Os01t0329300-01;Locus_id=Os01g0329300;Oryzabase Gene Symbol Synonym(s)=OsPGL20%2C PGL20;Oryzabase Gene Name Synonym(s)=Polygalacturonases-Like 20%2C PG-like 20;Note=Pectin lyase fold domain containing protein.;Transcript_evidence=AK110223 (DDBJ%2C Best hit);ORF_evidence=B9EW65 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=002-162-E03;Oryzabase=22297;Expression=AK110223;TENOR=Os01t0329300-01;KEGG=Os01t0329300-01
Chr01	irgsp1_rep	five_prime_UTR	12701744	12701783	.	+	.	Parent=Os01t0329300-01
Chr01	irgsp1_rep	CDS	12701784	12703007	.	+	0	Parent=Os01t0329300-01
Chr01	irgsp1_rep	CDS	12703099	12703266	.	+	0	Parent=Os01t0329300-01
Chr01	irgsp1_rep	CDS	12703413	12703457	.	+	0	Parent=Os01t0329300-01
Chr01	irgsp1_rep	CDS	12703559	12704401	.	+	0	Parent=Os01t0329300-01
Chr01	irgsp1_rep	three_prime_UTR	12704402	12704532	.	+	.	Parent=Os01t0329300-01
Chr01	irgsp1_rep	mRNA	12702583	12704246	.	-	.	ID=Os01t0329350-00;Name=Os01t0329350-00;Locus_id=Os01g0329350;Note=Hypothetical protein.;Transcript_evidence=tplb0028j17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0329350-00
Chr01	irgsp1_rep	five_prime_UTR	12704246	12704246	.	-	.	Parent=Os01t0329350-00
Chr01	irgsp1_rep	CDS	12703552	12704245	.	-	0	Parent=Os01t0329350-00
Chr01	irgsp1_rep	CDS	12703087	12703305	.	-	2	Parent=Os01t0329350-00
Chr01	irgsp1_rep	CDS	12702771	12703000	.	-	2	Parent=Os01t0329350-00
Chr01	irgsp1_rep	three_prime_UTR	12702583	12702770	.	-	.	Parent=Os01t0329350-00
Chr01	irgsp1_rep	mRNA	12704756	12709781	.	-	.	ID=Os01t0329400-01;Name=Os01t0329400-01;Locus_id=Os01g0329400;Note=Mitochondrial substrate carrier family protein.;Transcript_evidence=AK101813 (DDBJ%2C Best hit);ORF_evidence=XP_002871676.1 (RefSeq);InterPro=Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J033066P16;Expression=AK101813;TENOR=Os01t0329400-01;KEGG=Os01t0329400-01
Chr01	irgsp1_rep	five_prime_UTR	12709521	12709781	.	-	.	Parent=Os01t0329400-01
Chr01	irgsp1_rep	CDS	12709438	12709520	.	-	0	Parent=Os01t0329400-01
Chr01	irgsp1_rep	CDS	12707495	12707876	.	-	1	Parent=Os01t0329400-01
Chr01	irgsp1_rep	CDS	12706801	12706997	.	-	0	Parent=Os01t0329400-01
Chr01	irgsp1_rep	CDS	12706563	12706704	.	-	1	Parent=Os01t0329400-01
Chr01	irgsp1_rep	CDS	12705357	12705516	.	-	0	Parent=Os01t0329400-01
Chr01	irgsp1_rep	CDS	12705258	12705283	.	-	2	Parent=Os01t0329400-01
Chr01	irgsp1_rep	three_prime_UTR	12704756	12705257	.	-	.	Parent=Os01t0329400-01
Chr01	irgsp1_rep	mRNA	12704756	12707798	.	-	.	ID=Os01t0329400-02;Name=Os01t0329400-02;Locus_id=Os01g0329400;Note=Similar to predicted protein.;Transcript_evidence=AK062175 (DDBJ%2C Best hit);ORF_evidence=NP_568317.1 (RefSeq);InterPro=Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=001-046-C12;Expression=AK062175;TENOR=Os01t0329400-02;KEGG=Os01t0329400-02
Chr01	irgsp1_rep	five_prime_UTR	12707798	12707798	.	-	.	Parent=Os01t0329400-02
Chr01	irgsp1_rep	CDS	12707495	12707797	.	-	0	Parent=Os01t0329400-02
Chr01	irgsp1_rep	CDS	12706801	12706997	.	-	0	Parent=Os01t0329400-02
Chr01	irgsp1_rep	CDS	12706563	12706704	.	-	1	Parent=Os01t0329400-02
Chr01	irgsp1_rep	CDS	12705357	12705516	.	-	0	Parent=Os01t0329400-02
Chr01	irgsp1_rep	CDS	12705258	12705283	.	-	2	Parent=Os01t0329400-02
Chr01	irgsp1_rep	three_prime_UTR	12704756	12705257	.	-	.	Parent=Os01t0329400-02
Chr01	irgsp1_rep	mRNA	12725141	12730824	.	+	.	ID=Os01t0329800-01;Name=Os01t0329800-01;Locus_id=Os01g0329800;Oryzabase Gene Symbol Synonym(s)=IAI1;Oryzabase Gene Name Synonym(s)=incompatible strain of P. avenae-induced gene 1;Note=YT521-B-like protein family protein.;Transcript_evidence=AK073536 (DDBJ%2C Best hit);ORF_evidence=Q948R4 (UniProt);InterPro=YTH domain (IPR007275);NIAS_FLcDNA=J033041N22;Oryzabase=13669;Expression=AK073536;TENOR=Os01t0329800-01;KEGG=Os01t0329800-01
Chr01	irgsp1_rep	five_prime_UTR	12725141	12725397	.	+	.	Parent=Os01t0329800-01
Chr01	irgsp1_rep	five_prime_UTR	12727056	12727090	.	+	.	Parent=Os01t0329800-01
Chr01	irgsp1_rep	CDS	12727091	12727178	.	+	0	Parent=Os01t0329800-01
Chr01	irgsp1_rep	CDS	12727278	12727351	.	+	2	Parent=Os01t0329800-01
Chr01	irgsp1_rep	CDS	12727433	12727930	.	+	0	Parent=Os01t0329800-01
Chr01	irgsp1_rep	CDS	12728692	12729216	.	+	0	Parent=Os01t0329800-01
Chr01	irgsp1_rep	CDS	12729302	12729514	.	+	0	Parent=Os01t0329800-01
Chr01	irgsp1_rep	CDS	12729735	12730463	.	+	0	Parent=Os01t0329800-01
Chr01	irgsp1_rep	three_prime_UTR	12730464	12730824	.	+	.	Parent=Os01t0329800-01
Chr01	irgsp1_rep	mRNA	12729794	12731526	.	+	.	ID=Os01t0329800-02;Name=Os01t0329800-02;Locus_id=Os01g0329800;Oryzabase Gene Symbol Synonym(s)=IAI1;Oryzabase Gene Name Synonym(s)=incompatible strain of P. avenae-induced gene 1;Note=Hypothetical conserved gene.;Transcript_evidence=AK107331 (DDBJ%2C Best hit);ORF_evidence=B9EW66 (UniProt);NIAS_FLcDNA=002-126-F04;Oryzabase=13669;Expression=AK107331;TENOR=Os01t0329800-02;KEGG=Os01t0329800-02
Chr01	irgsp1_rep	five_prime_UTR	12729794	12729794	.	+	.	Parent=Os01t0329800-02
Chr01	irgsp1_rep	CDS	12729795	12730463	.	+	0	Parent=Os01t0329800-02
Chr01	irgsp1_rep	three_prime_UTR	12730464	12731526	.	+	.	Parent=Os01t0329800-02
Chr01	irgsp1_rep	mRNA	12734098	12738081	.	+	.	ID=Os01t0329900-01;Name=Os01t0329900-01;Locus_id=Os01g0329900;CGSNL Gene Symbol=GELP14;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 14;Oryzabase Gene Symbol Synonym(s)=OsGELP14;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 14;Note=Similar to Lipase homolog (Fragment).;Transcript_evidence=AK120056 (DDBJ%2C Best hit);ORF_evidence=NP_001151259.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=J013000O15;Oryzabase=10964;Expression=AK120056;TENOR=Os01t0329900-01;KEGG=Os01t0329900-01
Chr01	irgsp1_rep	five_prime_UTR	12734098	12734341	.	+	.	Parent=Os01t0329900-01
Chr01	irgsp1_rep	CDS	12734342	12734786	.	+	0	Parent=Os01t0329900-01
Chr01	irgsp1_rep	CDS	12735660	12735845	.	+	2	Parent=Os01t0329900-01
Chr01	irgsp1_rep	CDS	12736603	12736755	.	+	2	Parent=Os01t0329900-01
Chr01	irgsp1_rep	CDS	12737215	12737741	.	+	2	Parent=Os01t0329900-01
Chr01	irgsp1_rep	three_prime_UTR	12737742	12738081	.	+	.	Parent=Os01t0329900-01
Chr01	irgsp1_rep	mRNA	12734098	12734900	.	+	.	ID=Os01t0329900-02;Name=Os01t0329900-02;Locus_id=Os01g0329900;CGSNL Gene Symbol=GELP14;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 14;Oryzabase Gene Symbol Synonym(s)=OsGELP14;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 14;Note=Hypothetical conserved gene.;Transcript_evidence=AK105168 (DDBJ%2C Best hit);ORF_evidence=NP_001151259.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=001-104-F02;Oryzabase=10964;TENOR=Os01t0329900-02
Chr01	irgsp1_rep	five_prime_UTR	12734098	12734341	.	+	.	Parent=Os01t0329900-02
Chr01	irgsp1_rep	CDS	12734342	12734900	.	+	0	Parent=Os01t0329900-02
Chr01	irgsp1_rep	mRNA	12735654	12735854	.	-	.	ID=Os01t0330001-00;Name=Os01t0330001-00;Locus_id=Os01g0330001;Note=Non-protein coding transcript.;Transcript_evidence=EU942788 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0330001-00
Chr01	irgsp1_rep	exon	12735654	12735854	.	-	.	Parent=Os01t0330001-00
Chr01	irgsp1_rep	mRNA	12742212	12745509	.	+	.	ID=Os01t0330100-01;Name=Os01t0330100-01;Locus_id=Os01g0330100;CGSNL Gene Symbol=GELP15;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 15;Oryzabase Gene Symbol Synonym(s)=OsGELP15%2C OsGELP15a%2C OsGELP15b%2C OsGELP15c;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 15;Note=Similar to Alpha-L-fucosidase 2.;Transcript_evidence=AK100480 (DDBJ%2C Best hit);ORF_evidence=B6SUA8 (UniProt);NIAS_FLcDNA=J023095I15;Oryzabase=10965;TENOR=Os01t0330100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	12742212	12742212	.	+	.	Parent=Os01t0330100-01
Chr01	irgsp1_rep	CDS	12742213	12742509	.	+	0	Parent=Os01t0330100-01
Chr01	irgsp1_rep	three_prime_UTR	12742510	12744323	.	+	.	Parent=Os01t0330100-01
Chr01	irgsp1_rep	three_prime_UTR	12744472	12744629	.	+	.	Parent=Os01t0330100-01
Chr01	irgsp1_rep	three_prime_UTR	12744722	12744992	.	+	.	Parent=Os01t0330100-01
Chr01	irgsp1_rep	three_prime_UTR	12745078	12745509	.	+	.	Parent=Os01t0330100-01
Chr01	irgsp1_rep	mRNA	12745559	12747074	.	-	.	ID=Os01t0330200-00;Name=Os01t0330200-00;Locus_id=Os01g0330200;Note=Peptidase C1A%2C papain family protein.;Transcript_evidence=CT834889 (DDBJ%2C Best hit);ORF_evidence=Q9ASM1 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase%2C cysteine peptidase active site (IPR000169),Peptidase C1A%2C papain C-terminal (IPR000668),Peptidase C1A%2C papain (IPR013128),Proteinase inhibitor I29%2C cathepsin propeptide (IPR013201);TENOR=Os01t0330200-00;KEGG=Os01t0330200-00
Chr01	irgsp1_rep	five_prime_UTR	12746920	12747074	.	-	.	Parent=Os01t0330200-00
Chr01	irgsp1_rep	CDS	12746457	12746919	.	-	0	Parent=Os01t0330200-00
Chr01	irgsp1_rep	CDS	12745757	12746367	.	-	2	Parent=Os01t0330200-00
Chr01	irgsp1_rep	three_prime_UTR	12745559	12745756	.	-	.	Parent=Os01t0330200-00
Chr01	irgsp1_rep	mRNA	12762695	12765301	.	+	.	ID=Os01t0330650-01;Name=Os01t0330650-01;Locus_id=Os01g0330650;Note=Hypothetical gene.;Transcript_evidence=AK288176 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090004M07;TENOR=Os01t0330650-01;KEGG=Os01t0330650-01
Chr01	irgsp1_rep	five_prime_UTR	12762695	12765028	.	+	.	Parent=Os01t0330650-01
Chr01	irgsp1_rep	CDS	12765029	12765295	.	+	0	Parent=Os01t0330650-01
Chr01	irgsp1_rep	three_prime_UTR	12765296	12765301	.	+	.	Parent=Os01t0330650-01
Chr01	irgsp1_rep	mRNA	12804579	12810204	.	+	.	ID=Os01t0331100-01;Name=Os01t0331100-01;Locus_id=Os01g0331100;CGSNL Gene Symbol=GELP16;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 16;Oryzabase Gene Symbol Synonym(s)=OsGELP16%2C OsGELP16a%2C OsGELP16b;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 16;Note=Similar to Alpha-L-fucosidase 2.;Transcript_evidence=AK100992 (DDBJ%2C Best hit);ORF_evidence=B6SUA8 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=J023146F09;Oryzabase=10966;TENOR=Os01t0331100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	12804579	12804730	.	+	.	Parent=Os01t0331100-01
Chr01	irgsp1_rep	CDS	12804731	12805028	.	+	0	Parent=Os01t0331100-01
Chr01	irgsp1_rep	CDS	12808482	12808834	.	+	2	Parent=Os01t0331100-01
Chr01	irgsp1_rep	CDS	12809324	12809594	.	+	0	Parent=Os01t0331100-01
Chr01	irgsp1_rep	CDS	12809699	12810030	.	+	2	Parent=Os01t0331100-01
Chr01	irgsp1_rep	three_prime_UTR	12810031	12810204	.	+	.	Parent=Os01t0331100-01
Chr01	irgsp1_rep	mRNA	12808477	12808654	.	-	.	ID=Os01t0331500-00;Name=Os01t0331500-00;Locus_id=Os01g0331500;Note=Non-protein coding transcript.;Transcript_evidence=EU942788 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0331500-00
Chr01	irgsp1_rep	exon	12808477	12808654	.	-	.	Parent=Os01t0331500-00
Chr01	irgsp1_rep	mRNA	12848923	12853398	.	+	.	ID=Os01t0331900-01;Name=Os01t0331900-01;Locus_id=Os01g0331900;Note=Protein of unknown function DUF846%2C eukaryotic family protein.;Transcript_evidence=AK121761 (DDBJ%2C Best hit);ORF_evidence=B6SML9 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Protein of unknown function DUF846%2C eukaryotic (IPR008564);NIAS_FLcDNA=J033090D14;Expression=AK121761;TENOR=Os01t0331900-01;KEGG=Os01t0331900-01
Chr01	irgsp1_rep	five_prime_UTR	12848923	12849067	.	+	.	Parent=Os01t0331900-01
Chr01	irgsp1_rep	CDS	12849068	12849082	.	+	0	Parent=Os01t0331900-01
Chr01	irgsp1_rep	CDS	12849479	12849535	.	+	0	Parent=Os01t0331900-01
Chr01	irgsp1_rep	CDS	12849635	12849838	.	+	0	Parent=Os01t0331900-01
Chr01	irgsp1_rep	CDS	12849920	12849979	.	+	0	Parent=Os01t0331900-01
Chr01	irgsp1_rep	CDS	12852147	12852273	.	+	0	Parent=Os01t0331900-01
Chr01	irgsp1_rep	CDS	12852922	12853010	.	+	2	Parent=Os01t0331900-01
Chr01	irgsp1_rep	three_prime_UTR	12853011	12853398	.	+	.	Parent=Os01t0331900-01
Chr01	irgsp1_rep	mRNA	12849015	12853391	.	+	.	ID=Os01t0331900-02;Name=Os01t0331900-02;Locus_id=Os01g0331900;Note=Protein of unknown function DUF846%2C eukaryotic family protein.;Transcript_evidence=AK064784 (DDBJ%2C Best hit);ORF_evidence=B6SML9 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Protein of unknown function DUF846%2C eukaryotic (IPR008564);NIAS_FLcDNA=J013000B15;Expression=AK064784;TENOR=Os01t0331900-02;KEGG=Os01t0331900-02
Chr01	irgsp1_rep	five_prime_UTR	12849015	12849067	.	+	.	Parent=Os01t0331900-02
Chr01	irgsp1_rep	CDS	12849068	12849082	.	+	0	Parent=Os01t0331900-02
Chr01	irgsp1_rep	CDS	12849479	12849535	.	+	0	Parent=Os01t0331900-02
Chr01	irgsp1_rep	CDS	12849635	12849838	.	+	0	Parent=Os01t0331900-02
Chr01	irgsp1_rep	CDS	12849920	12849979	.	+	0	Parent=Os01t0331900-02
Chr01	irgsp1_rep	CDS	12852147	12852273	.	+	0	Parent=Os01t0331900-02
Chr01	irgsp1_rep	CDS	12852922	12853010	.	+	2	Parent=Os01t0331900-02
Chr01	irgsp1_rep	three_prime_UTR	12853011	12853391	.	+	.	Parent=Os01t0331900-02
Chr01	irgsp1_rep	mRNA	12860155	12860298	.	+	.	ID=Os01t0332002-00;Name=Os01t0332002-00;Locus_id=Os01g0332002;Note=Non-protein coding transcript.;Transcript_evidence=EU941920 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0332002-00
Chr01	irgsp1_rep	exon	12860155	12860298	.	+	.	Parent=Os01t0332002-00
Chr01	irgsp1_rep	mRNA	12870240	12874218	.	+	.	ID=Os01t0332100-01;Name=Os01t0332100-01;Locus_id=Os01g0332100;CGSNL Gene Symbol=NIN2;CGSNL Gene Name=NEUTRAL/ALKALINE INVERTASE 2;Oryzabase Gene Symbol Synonym(s)=OsNIN2%2C CytINV%2C OsCytINV;Oryzabase Gene Name Synonym(s)=neutral/alkaline invertase 2%2C cytosolic neutral invertase;Note=Similar to Neutral invertase-like protein (Fragment).;Transcript_evidence=AK120720 (DDBJ%2C Best hit);ORF_evidence=Q84XG8 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Plant neutral invertase (IPR006937),Six-hairpin glycosidase-like (IPR008928);NIAS_FLcDNA=J023002G12;Oryzabase=14667;Expression=AK120720;TENOR=Os01t0332100-01;KEGG=Os01t0332100-01
Chr01	irgsp1_rep	five_prime_UTR	12870240	12870427	.	+	.	Parent=Os01t0332100-01
Chr01	irgsp1_rep	CDS	12870428	12871069	.	+	0	Parent=Os01t0332100-01
Chr01	irgsp1_rep	CDS	12871778	12871943	.	+	0	Parent=Os01t0332100-01
Chr01	irgsp1_rep	CDS	12872028	12872239	.	+	2	Parent=Os01t0332100-01
Chr01	irgsp1_rep	CDS	12872493	12872986	.	+	0	Parent=Os01t0332100-01
Chr01	irgsp1_rep	CDS	12873349	12873397	.	+	1	Parent=Os01t0332100-01
Chr01	irgsp1_rep	CDS	12873488	12873811	.	+	0	Parent=Os01t0332100-01
Chr01	irgsp1_rep	three_prime_UTR	12873812	12874218	.	+	.	Parent=Os01t0332100-01
Chr01	irgsp1_rep	mRNA	12872493	12874172	.	+	.	ID=Os01t0332100-02;Name=Os01t0332100-02;Locus_id=Os01g0332100;CGSNL Gene Symbol=NIN2;CGSNL Gene Name=NEUTRAL/ALKALINE INVERTASE 2;Oryzabase Gene Symbol Synonym(s)=OsNIN2%2C CytINV%2C OsCytINV;Oryzabase Gene Name Synonym(s)=neutral/alkaline invertase 2%2C cytosolic neutral invertase;Note=Similar to Invertase.;Transcript_evidence=AK061240 (DDBJ%2C Best hit);ORF_evidence=Q84XG8 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Plant neutral invertase (IPR006937),Six-hairpin glycosidase-like (IPR008928);NIAS_FLcDNA=006-211-C06;Oryzabase=14667;Expression=AK061240;TENOR=Os01t0332100-02;KEGG=Os01t0332100-02
Chr01	irgsp1_rep	CDS	12872493	12872986	.	+	0	Parent=Os01t0332100-02
Chr01	irgsp1_rep	CDS	12873349	12873397	.	+	1	Parent=Os01t0332100-02
Chr01	irgsp1_rep	CDS	12873488	12873811	.	+	0	Parent=Os01t0332100-02
Chr01	irgsp1_rep	three_prime_UTR	12873812	12874172	.	+	.	Parent=Os01t0332100-02
Chr01	irgsp1_rep	mRNA	12870691	12873687	.	-	.	ID=Os01t0332150-00;Name=Os01t0332150-00;Locus_id=Os01g0332150;Note=Hypothetical protein.;Transcript_evidence=tplb0038i24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0332150-00
Chr01	irgsp1_rep	five_prime_UTR	12873486	12873687	.	-	.	Parent=Os01t0332150-00
Chr01	irgsp1_rep	five_prime_UTR	12872482	12873030	.	-	.	Parent=Os01t0332150-00
Chr01	irgsp1_rep	five_prime_UTR	12872194	12872227	.	-	.	Parent=Os01t0332150-00
Chr01	irgsp1_rep	CDS	12872031	12872193	.	-	0	Parent=Os01t0332150-00
Chr01	irgsp1_rep	CDS	12871801	12871949	.	-	2	Parent=Os01t0332150-00
Chr01	irgsp1_rep	three_prime_UTR	12871774	12871800	.	-	.	Parent=Os01t0332150-00
Chr01	irgsp1_rep	three_prime_UTR	12870691	12871065	.	-	.	Parent=Os01t0332150-00
Chr01	irgsp1_rep	mRNA	12875498	12885479	.	-	.	ID=Os01t0332200-01;Name=Os01t0332200-01;Locus_id=Os01g0332200;RAP-DB Gene Symbol Synonym(s)=GA2OX2%2C OsGA2ox2%2C ga2ox 2%2C OsGA2ox-2;RAP-DB Gene Name Synonym(s)=GIBBERELLIN 2-OXIDASE 2%2C rice GA 2-oxidase2%2C GA 2-oxidase 2%2C Gibberellin 2-oxidase 2;CGSNL Gene Symbol=GA2OX2;CGSNL Gene Name=GIBBERELLIN 2-OXIDASE 2;Oryzabase Gene Symbol Synonym(s)=OsGA2ox2%2C ga2ox 2%2C OsGA2ox-2;Oryzabase Gene Name Synonym(s)=rice GA 2-oxidase2%2C GA 2-oxidase 2%2C Gibberellin 2-oxidase 2;Note=GA 2-oxidase2%2C GA metabolism;Transcript_evidence=AB092484 (Genbank);ORF_evidence=Q8H947 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Isopenicillin N synthase (IPR002283),Oxoglutarate/iron-dependent oxygenase (IPR005123);Manual Curation=June 1%2C 2009;Literature_PMID=12736788,18173378;Oryzabase=5115;TENOR=Os01t0332200-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	12885046	12885479	.	-	0	Parent=Os01t0332200-01
Chr01	irgsp1_rep	CDS	12876706	12877096	.	-	1	Parent=Os01t0332200-01
Chr01	irgsp1_rep	CDS	12875498	12875785	.	-	0	Parent=Os01t0332200-01
Chr01	irgsp1_rep	mRNA	12896359	12915380	.	+	.	ID=Os01t0332500-01;Name=Os01t0332500-01;Locus_id=Os01g0332500;Note=Similar to Serine carboxypeptidase II-like protein.;Transcript_evidence=AK101382 (DDBJ%2C Best hit);ORF_evidence=B6T4S1 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=J033036E19;Expression=AK101382;TENOR=Os01t0332500-01;KEGG=Os01t0332500-01 (EC:3.4.16.5)
Chr01	irgsp1_rep	five_prime_UTR	12896359	12896374	.	+	.	Parent=Os01t0332500-01
Chr01	irgsp1_rep	CDS	12896375	12896717	.	+	0	Parent=Os01t0332500-01
Chr01	irgsp1_rep	CDS	12896810	12896917	.	+	2	Parent=Os01t0332500-01
Chr01	irgsp1_rep	CDS	12897026	12897121	.	+	2	Parent=Os01t0332500-01
Chr01	irgsp1_rep	CDS	12897211	12897303	.	+	2	Parent=Os01t0332500-01
Chr01	irgsp1_rep	CDS	12897982	12898070	.	+	2	Parent=Os01t0332500-01
Chr01	irgsp1_rep	CDS	12898434	12898709	.	+	0	Parent=Os01t0332500-01
Chr01	irgsp1_rep	CDS	12898777	12898925	.	+	0	Parent=Os01t0332500-01
Chr01	irgsp1_rep	CDS	12914389	12914484	.	+	1	Parent=Os01t0332500-01
Chr01	irgsp1_rep	CDS	12914706	12914811	.	+	1	Parent=Os01t0332500-01
Chr01	irgsp1_rep	CDS	12914954	12915100	.	+	0	Parent=Os01t0332500-01
Chr01	irgsp1_rep	three_prime_UTR	12915101	12915380	.	+	.	Parent=Os01t0332500-01
Chr01	irgsp1_rep	mRNA	12909372	12909833	.	-	.	ID=Os01t0332700-00;Name=Os01t0332700-00;Locus_id=Os01g0332700;Note=Similar to predicted protein.;Transcript_evidence=tplb0003j05 (Wheat FLcDNA);ORF_evidence=B6TMS6 (UniProt);TENOR=Os01t0332700-00;KEGG=Os01t0332700-00
Chr01	irgsp1_rep	CDS	12909372	12909833	.	-	0	Parent=Os01t0332700-00
Chr01	irgsp1_rep	mRNA	12915424	12919209	.	-	.	ID=Os01t0332800-01;Name=Os01t0332800-01;Locus_id=Os01g0332800;CGSNL Gene Symbol=SCP3;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 3;Oryzabase Gene Symbol Synonym(s)=OsSCP3;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 3;Note=Similar to Serine carboxypeptidase II-like protein.;Transcript_evidence=AK067493 (DDBJ%2C Best hit);ORF_evidence=B6T4S1 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=J013111L08;Oryzabase=19188;Expression=AK067493;TENOR=Os01t0332800-01;KEGG=Os01t0332800-01 (EC:3.4.16.5)
Chr01	irgsp1_rep	five_prime_UTR	12919101	12919209	.	-	.	Parent=Os01t0332800-01
Chr01	irgsp1_rep	CDS	12918824	12919100	.	-	0	Parent=Os01t0332800-01
Chr01	irgsp1_rep	CDS	12918458	12918565	.	-	2	Parent=Os01t0332800-01
Chr01	irgsp1_rep	CDS	12918231	12918326	.	-	2	Parent=Os01t0332800-01
Chr01	irgsp1_rep	CDS	12918042	12918134	.	-	2	Parent=Os01t0332800-01
Chr01	irgsp1_rep	CDS	12917350	12917438	.	-	2	Parent=Os01t0332800-01
Chr01	irgsp1_rep	CDS	12916750	12917025	.	-	0	Parent=Os01t0332800-01
Chr01	irgsp1_rep	CDS	12916515	12916663	.	-	0	Parent=Os01t0332800-01
Chr01	irgsp1_rep	CDS	12916330	12916425	.	-	1	Parent=Os01t0332800-01
Chr01	irgsp1_rep	CDS	12915902	12916007	.	-	1	Parent=Os01t0332800-01
Chr01	irgsp1_rep	CDS	12915630	12915782	.	-	0	Parent=Os01t0332800-01
Chr01	irgsp1_rep	three_prime_UTR	12915424	12915629	.	-	.	Parent=Os01t0332800-01
Chr01	irgsp1_rep	mRNA	12915334	12919043	.	-	.	ID=Os01t0332800-02;Name=Os01t0332800-02;Locus_id=Os01g0332800;CGSNL Gene Symbol=SCP3;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 3;Oryzabase Gene Symbol Synonym(s)=OsSCP3;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 3;Note=Similar to SCPL33.;Transcript_evidence=AK061997 (DDBJ%2C Best hit);ORF_evidence=B6T4S1 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=001-043-C12;Oryzabase=19188;Expression=AK061997;TENOR=Os01t0332800-02;KEGG=Os01t0332800-02 (EC:3.4.16.5)
Chr01	irgsp1_rep	CDS	12918824	12919043	.	-	0	Parent=Os01t0332800-02
Chr01	irgsp1_rep	CDS	12918458	12918565	.	-	2	Parent=Os01t0332800-02
Chr01	irgsp1_rep	CDS	12918231	12918326	.	-	2	Parent=Os01t0332800-02
Chr01	irgsp1_rep	CDS	12918042	12918134	.	-	2	Parent=Os01t0332800-02
Chr01	irgsp1_rep	CDS	12917350	12917438	.	-	2	Parent=Os01t0332800-02
Chr01	irgsp1_rep	CDS	12916750	12917025	.	-	0	Parent=Os01t0332800-02
Chr01	irgsp1_rep	CDS	12916515	12916663	.	-	0	Parent=Os01t0332800-02
Chr01	irgsp1_rep	CDS	12916330	12916425	.	-	1	Parent=Os01t0332800-02
Chr01	irgsp1_rep	CDS	12915902	12916007	.	-	1	Parent=Os01t0332800-02
Chr01	irgsp1_rep	CDS	12915630	12915782	.	-	0	Parent=Os01t0332800-02
Chr01	irgsp1_rep	three_prime_UTR	12915334	12915629	.	-	.	Parent=Os01t0332800-02
Chr01	irgsp1_rep	mRNA	12921594	12924616	.	-	.	ID=Os01t0332900-01;Name=Os01t0332900-01;Locus_id=Os01g0332900;Note=Similar to immediate-early protein RSP40.;Transcript_evidence=AK069030 (DDBJ%2C Best hit);ORF_evidence=B6U982 (UniProt);NIAS_FLcDNA=J023003F03;Oryzabase=20448;Expression=AK069030;TENOR=Os01t0332900-01;KEGG=Os01t0332900-01
Chr01	irgsp1_rep	five_prime_UTR	12922172	12924616	.	-	.	Parent=Os01t0332900-01
Chr01	irgsp1_rep	CDS	12921848	12922171	.	-	0	Parent=Os01t0332900-01
Chr01	irgsp1_rep	three_prime_UTR	12921594	12921847	.	-	.	Parent=Os01t0332900-01
Chr01	irgsp1_rep	mRNA	12921581	12923390	.	-	.	ID=Os01t0332900-02;Name=Os01t0332900-02;Locus_id=Os01g0332900;Note=Similar to immediate-early protein RSP40.;Transcript_evidence=AK065940 (DDBJ%2C Best hit);ORF_evidence=B6U982 (UniProt);NIAS_FLcDNA=J013049E06;Oryzabase=20448;Expression=AK065940;TENOR=Os01t0332900-02;KEGG=Os01t0332900-02
Chr01	irgsp1_rep	five_prime_UTR	12922172	12923390	.	-	.	Parent=Os01t0332900-02
Chr01	irgsp1_rep	CDS	12921848	12922171	.	-	0	Parent=Os01t0332900-02
Chr01	irgsp1_rep	three_prime_UTR	12921581	12921847	.	-	.	Parent=Os01t0332900-02
Chr01	irgsp1_rep	mRNA	12924255	12925541	.	+	.	ID=Os01t0333001-00;Name=Os01t0333001-00;Locus_id=Os01g0333001;Note=Non-protein coding transcript.;Transcript_evidence=CT829280 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os01t0333001-00
Chr01	irgsp1_rep	exon	12924255	12925121	.	+	.	Parent=Os01t0333001-00
Chr01	irgsp1_rep	exon	12925396	12925541	.	+	.	Parent=Os01t0333001-00
Chr01	irgsp1_rep	mRNA	12980585	12982781	.	+	.	ID=Os01t0333600-00;Name=Os01t0333600-00;Locus_id=Os01g0333600;Note=Protein of unknown function DUF594 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5Z831 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);TENOR=Os01t0333600-00
Chr01	irgsp1_rep	CDS	12980585	12982180	.	+	0	Parent=Os01t0333600-00
Chr01	irgsp1_rep	CDS	12982206	12982781	.	+	0	Parent=Os01t0333600-00
Chr01	irgsp1_rep	mRNA	13140037	13141283	.	+	.	ID=Os01t0335600-01;Name=Os01t0335600-01;Locus_id=Os01g0335600;Note=Conserved hypothetical protein.;Transcript_evidence=AK070305 (DDBJ%2C Best hit);ORF_evidence=A2ZSN7 (UniProt);NIAS_FLcDNA=J023047E23;TENOR=Os01t0335600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	13140037	13140037	.	+	.	Parent=Os01t0335600-01
Chr01	irgsp1_rep	CDS	13140038	13140733	.	+	0	Parent=Os01t0335600-01
Chr01	irgsp1_rep	three_prime_UTR	13140734	13141283	.	+	.	Parent=Os01t0335600-01
Chr01	irgsp1_rep	mRNA	13142060	13144941	.	-	.	ID=Os01t0335700-01;Name=Os01t0335700-01;Locus_id=Os01g0335700;Note=NB-ARC domain containing protein.;Transcript_evidence=AK068195 (DDBJ%2C Best hit);ORF_evidence=C0LHA7 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013146B15;Oryzabase=14946;Expression=AK068195;TENOR=Os01t0335700-01;KEGG=Os01t0335700-01
Chr01	irgsp1_rep	five_prime_UTR	13144786	13144941	.	-	.	Parent=Os01t0335700-01
Chr01	irgsp1_rep	CDS	13143923	13144785	.	-	0	Parent=Os01t0335700-01
Chr01	irgsp1_rep	CDS	13142186	13143800	.	-	1	Parent=Os01t0335700-01
Chr01	irgsp1_rep	three_prime_UTR	13142060	13142185	.	-	.	Parent=Os01t0335700-01
Chr01	irgsp1_rep	mRNA	13170797	13171929	.	-	.	ID=Os01t0336300-00;Name=Os01t0336300-00;Locus_id=Os01g0336300;Note=Hypothetical conserved gene.;Transcript_evidence=AK070305 (DDBJ%2C Secondary hit);ORF_evidence=Q5Z8F8 (UniProt);Expression=AK070305;TENOR=Os01t0336300-00;KEGG=Os01t0336300-00
Chr01	irgsp1_rep	five_prime_UTR	13171929	13171929	.	-	.	Parent=Os01t0336300-00
Chr01	irgsp1_rep	CDS	13171584	13171928	.	-	0	Parent=Os01t0336300-00
Chr01	irgsp1_rep	CDS	13171231	13171578	.	-	0	Parent=Os01t0336300-00
Chr01	irgsp1_rep	three_prime_UTR	13170797	13171230	.	-	.	Parent=Os01t0336300-00
Chr01	irgsp1_rep	mRNA	13211987	13218563	.	+	.	ID=Os01t0337100-00;Name=Os01t0337100-00;Locus_id=Os01g0337100;Oryzabase Gene Symbol Synonym(s)=OsTPS1;Oryzabase Gene Name Synonym(s)=terpene synthase 1;Note=Similar to Sesquiterpene synthase.;Transcript_evidence=AY647253 (DDBJ);ORF_evidence=C5H3I7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: lyase activity (GO:0016829);InterPro=Terpene synthase-like (IPR001906),Terpene synthase%2C metal-binding domain (IPR005630),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930),Terpenoid synthase (IPR008949);Oryzabase=18703;TENOR=Os01t0337100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	13211987	13212133	.	+	0	Parent=Os01t0337100-00
Chr01	irgsp1_rep	CDS	13213697	13213949	.	+	0	Parent=Os01t0337100-00
Chr01	irgsp1_rep	CDS	13214931	13215294	.	+	2	Parent=Os01t0337100-00
Chr01	irgsp1_rep	CDS	13215404	13215622	.	+	1	Parent=Os01t0337100-00
Chr01	irgsp1_rep	CDS	13217009	13217151	.	+	1	Parent=Os01t0337100-00
Chr01	irgsp1_rep	CDS	13217818	13217864	.	+	2	Parent=Os01t0337100-00
Chr01	irgsp1_rep	three_prime_UTR	13217865	13218069	.	+	.	Parent=Os01t0337100-00
Chr01	irgsp1_rep	three_prime_UTR	13218270	13218563	.	+	.	Parent=Os01t0337100-00
Chr01	irgsp1_rep	mRNA	13198486	13199578	.	-	.	ID=Os01t0337160-00;Name=Os01t0337160-00;Locus_id=Os01g0337160;Note=Conserved hypothetical protein.;Transcript_evidence=CT834981 (DDBJ%2C Best hit);ORF_evidence=NP_001172315.1 (RefSeq);TENOR=Os01t0337160-00;KEGG=Os01t0337160-00
Chr01	irgsp1_rep	five_prime_UTR	13199030	13199578	.	-	.	Parent=Os01t0337160-00
Chr01	irgsp1_rep	CDS	13198805	13199029	.	-	0	Parent=Os01t0337160-00
Chr01	irgsp1_rep	three_prime_UTR	13198486	13198804	.	-	.	Parent=Os01t0337160-00
Chr01	irgsp1_rep	mRNA	13198639	13199062	.	+	.	ID=Os01t0337180-01;Name=Os01t0337180-01;Locus_id=Os01g0337180;Note=Hypothetical gene.;Transcript_evidence=AK241856 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065215O21;TENOR=Os01t0337180-01;KEGG=Os01t0337180-01
Chr01	irgsp1_rep	five_prime_UTR	13198639	13198775	.	+	.	Parent=Os01t0337180-01
Chr01	irgsp1_rep	CDS	13198776	13199000	.	+	0	Parent=Os01t0337180-01
Chr01	irgsp1_rep	three_prime_UTR	13199001	13199062	.	+	.	Parent=Os01t0337180-01
Chr01	irgsp1_rep	mRNA	13237248	13246058	.	+	.	ID=Os01t0337500-00;Name=Os01t0337500-00;Locus_id=Os01g0337500;Note=Similar to H+-pyrophosphatase (Fragment).;Transcript_evidence=AY333187 (DDBJ%2C Best hit);ORF_evidence=XP_002318956.1 (RefSeq);GO=Biological Process: proton transport (GO:0015992),Cellular Component: membrane (GO:0016020),Molecular Function: inorganic diphosphatase activity (GO:0004427),Molecular Function: hydrogen-translocating pyrophosphatase activity (GO:0009678);InterPro=Pyrophosphate-energised proton pump (IPR004131);Expression=AY333187;TENOR=Os01t0337500-00;KEGG=Os01t0337500-00 (EC:3.6.1.1)
Chr01	irgsp1_rep	five_prime_UTR	13237248	13237344	.	+	.	Parent=Os01t0337500-00
Chr01	irgsp1_rep	CDS	13237345	13237621	.	+	0	Parent=Os01t0337500-00
Chr01	irgsp1_rep	CDS	13242934	13243508	.	+	2	Parent=Os01t0337500-00
Chr01	irgsp1_rep	CDS	13243897	13244276	.	+	0	Parent=Os01t0337500-00
Chr01	irgsp1_rep	CDS	13244377	13244463	.	+	1	Parent=Os01t0337500-00
Chr01	irgsp1_rep	CDS	13244590	13244920	.	+	1	Parent=Os01t0337500-00
Chr01	irgsp1_rep	CDS	13245001	13245411	.	+	0	Parent=Os01t0337500-00
Chr01	irgsp1_rep	CDS	13245494	13245553	.	+	0	Parent=Os01t0337500-00
Chr01	irgsp1_rep	CDS	13245682	13245882	.	+	0	Parent=Os01t0337500-00
Chr01	irgsp1_rep	three_prime_UTR	13245883	13246058	.	+	.	Parent=Os01t0337500-00
Chr01	irgsp1_rep	mRNA	13254649	13262228	.	-	.	ID=Os01t0337600-01;Name=Os01t0337600-01;Locus_id=Os01g0337600;Note=Similar to predicted protein.;Transcript_evidence=AK119468 (DDBJ%2C Best hit);ORF_evidence=NP_187323.2 (RefSeq);InterPro=Domain of unknown function DUF625 (IPR006887);NIAS_FLcDNA=001-134-A05;Expression=AK119468;TENOR=Os01t0337600-01;KEGG=Os01t0337600-01
Chr01	irgsp1_rep	five_prime_UTR	13262111	13262228	.	-	.	Parent=Os01t0337600-01
Chr01	irgsp1_rep	CDS	13262081	13262110	.	-	0	Parent=Os01t0337600-01
Chr01	irgsp1_rep	CDS	13261948	13262019	.	-	0	Parent=Os01t0337600-01
Chr01	irgsp1_rep	CDS	13260054	13260134	.	-	0	Parent=Os01t0337600-01
Chr01	irgsp1_rep	CDS	13259156	13259255	.	-	0	Parent=Os01t0337600-01
Chr01	irgsp1_rep	CDS	13258991	13259075	.	-	2	Parent=Os01t0337600-01
Chr01	irgsp1_rep	CDS	13258851	13258900	.	-	1	Parent=Os01t0337600-01
Chr01	irgsp1_rep	CDS	13258715	13258780	.	-	2	Parent=Os01t0337600-01
Chr01	irgsp1_rep	CDS	13257609	13257688	.	-	2	Parent=Os01t0337600-01
Chr01	irgsp1_rep	CDS	13257123	13257182	.	-	0	Parent=Os01t0337600-01
Chr01	irgsp1_rep	CDS	13256311	13256410	.	-	0	Parent=Os01t0337600-01
Chr01	irgsp1_rep	CDS	13256159	13256236	.	-	2	Parent=Os01t0337600-01
Chr01	irgsp1_rep	CDS	13255951	13256018	.	-	2	Parent=Os01t0337600-01
Chr01	irgsp1_rep	CDS	13255804	13255872	.	-	0	Parent=Os01t0337600-01
Chr01	irgsp1_rep	CDS	13255626	13255703	.	-	0	Parent=Os01t0337600-01
Chr01	irgsp1_rep	CDS	13255442	13255537	.	-	0	Parent=Os01t0337600-01
Chr01	irgsp1_rep	CDS	13254813	13254887	.	-	0	Parent=Os01t0337600-01
Chr01	irgsp1_rep	three_prime_UTR	13254649	13254812	.	-	.	Parent=Os01t0337600-01
Chr01	irgsp1_rep	mRNA	13246387	13262169	.	-	.	ID=Os01t0337600-02;Name=Os01t0337600-02;Locus_id=Os01g0337600;Note=Similar to binding.;Transcript_evidence=AK099595 (DDBJ%2C Best hit);ORF_evidence=NP_187323.2 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Domain of unknown function DUF625 (IPR006887),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013044O19;TENOR=Os01t0337600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	13262111	13262169	.	-	.	Parent=Os01t0337600-02
Chr01	irgsp1_rep	CDS	13262034	13262110	.	-	0	Parent=Os01t0337600-02
Chr01	irgsp1_rep	CDS	13261948	13261987	.	-	1	Parent=Os01t0337600-02
Chr01	irgsp1_rep	CDS	13260054	13260134	.	-	0	Parent=Os01t0337600-02
Chr01	irgsp1_rep	CDS	13259156	13259255	.	-	0	Parent=Os01t0337600-02
Chr01	irgsp1_rep	CDS	13258991	13259075	.	-	2	Parent=Os01t0337600-02
Chr01	irgsp1_rep	CDS	13258851	13258900	.	-	1	Parent=Os01t0337600-02
Chr01	irgsp1_rep	CDS	13258715	13258771	.	-	2	Parent=Os01t0337600-02
Chr01	irgsp1_rep	CDS	13257609	13257688	.	-	2	Parent=Os01t0337600-02
Chr01	irgsp1_rep	CDS	13257123	13257182	.	-	0	Parent=Os01t0337600-02
Chr01	irgsp1_rep	CDS	13256311	13256410	.	-	0	Parent=Os01t0337600-02
Chr01	irgsp1_rep	CDS	13256159	13256236	.	-	2	Parent=Os01t0337600-02
Chr01	irgsp1_rep	CDS	13255951	13256018	.	-	2	Parent=Os01t0337600-02
Chr01	irgsp1_rep	CDS	13255804	13255872	.	-	0	Parent=Os01t0337600-02
Chr01	irgsp1_rep	CDS	13255626	13255703	.	-	0	Parent=Os01t0337600-02
Chr01	irgsp1_rep	CDS	13255442	13255537	.	-	0	Parent=Os01t0337600-02
Chr01	irgsp1_rep	CDS	13254817	13254887	.	-	0	Parent=Os01t0337600-02
Chr01	irgsp1_rep	CDS	13251759	13251836	.	-	1	Parent=Os01t0337600-02
Chr01	irgsp1_rep	CDS	13251579	13251672	.	-	1	Parent=Os01t0337600-02
Chr01	irgsp1_rep	CDS	13250397	13250495	.	-	0	Parent=Os01t0337600-02
Chr01	irgsp1_rep	CDS	13249928	13250136	.	-	0	Parent=Os01t0337600-02
Chr01	irgsp1_rep	CDS	13249727	13249841	.	-	1	Parent=Os01t0337600-02
Chr01	irgsp1_rep	CDS	13248508	13248639	.	-	0	Parent=Os01t0337600-02
Chr01	irgsp1_rep	CDS	13248331	13248438	.	-	0	Parent=Os01t0337600-02
Chr01	irgsp1_rep	CDS	13247822	13247931	.	-	0	Parent=Os01t0337600-02
Chr01	irgsp1_rep	CDS	13247563	13247661	.	-	1	Parent=Os01t0337600-02
Chr01	irgsp1_rep	CDS	13246982	13247468	.	-	1	Parent=Os01t0337600-02
Chr01	irgsp1_rep	three_prime_UTR	13246387	13246981	.	-	.	Parent=Os01t0337600-02
Chr01	irgsp1_rep	mRNA	13264930	13265538	.	+	.	ID=Os01t0337700-01;Name=Os01t0337700-01;Locus_id=Os01g0337700;Note=Conserved hypothetical protein.;Transcript_evidence=AK109210 (DDBJ%2C Best hit),AK106340 (DDBJ%2C Best hit);ORF_evidence=A2WPG9 (UniProt);NIAS_FLcDNA=002-156-D01,002-101-G08;TENOR=Os01t0337700-01
Chr01	irgsp1_rep	five_prime_UTR	13264930	13265147	.	+	.	Parent=Os01t0337700-01
Chr01	irgsp1_rep	CDS	13265148	13265538	.	+	0	Parent=Os01t0337700-01
Chr01	irgsp1_rep	mRNA	13264941	13268354	.	+	.	ID=Os01t0337700-02;Name=Os01t0337700-02;Locus_id=Os01g0337700;Note=Conserved hypothetical protein.;Transcript_evidence=AK106939 (DDBJ%2C Best hit);ORF_evidence=A2WPG9 (UniProt);NIAS_FLcDNA=002-119-D02;Expression=AK106939;TENOR=Os01t0337700-02;KEGG=Os01t0337700-02
Chr01	irgsp1_rep	five_prime_UTR	13264941	13265147	.	+	.	Parent=Os01t0337700-02
Chr01	irgsp1_rep	CDS	13265148	13265540	.	+	0	Parent=Os01t0337700-02
Chr01	irgsp1_rep	three_prime_UTR	13265541	13265889	.	+	.	Parent=Os01t0337700-02
Chr01	irgsp1_rep	three_prime_UTR	13266185	13266252	.	+	.	Parent=Os01t0337700-02
Chr01	irgsp1_rep	three_prime_UTR	13267115	13267193	.	+	.	Parent=Os01t0337700-02
Chr01	irgsp1_rep	three_prime_UTR	13267280	13267387	.	+	.	Parent=Os01t0337700-02
Chr01	irgsp1_rep	three_prime_UTR	13267927	13268354	.	+	.	Parent=Os01t0337700-02
Chr01	irgsp1_rep	mRNA	13272614	13282008	.	+	.	ID=Os01t0337900-01;Name=Os01t0337900-01;Locus_id=Os01g0337900;Note=Similar to Dihydrolipoamide dehydrogenase.;Transcript_evidence=AK120645 (DDBJ%2C Best hit);ORF_evidence=A2WPH0 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: cytoplasm (GO:0005737),Molecular Function: dihydrolipoyl dehydrogenase activity (GO:0004148),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on a sulfur group of donors%2C NAD or NADP as acceptor (GO:0016668),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Pyridine nucleotide-disulphide oxidoreductase%2C NAD-binding domain (IPR001327),Pyridine nucleotide-disulphide oxidoreductase%2C dimerisation (IPR004099),Dihydrolipoamide dehydrogenase (IPR006258),Pyridine nucleotide-disulphide oxidoreductase%2C class I%2C active site (IPR012999),FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR013027),FAD/NAD-linked reductase%2C dimerisation (IPR016156),Pyridine nucleotide-disulphide oxidoreductase%2C FAD/NAD(P)-binding domain (IPR023753);NIAS_FLcDNA=J013155F12;Expression=AK120645;TENOR=Os01t0337900-01;KEGG=Os01t0337900-01 (EC:1.8.1.4)
Chr01	irgsp1_rep	five_prime_UTR	13272614	13272787	.	+	.	Parent=Os01t0337900-01
Chr01	irgsp1_rep	CDS	13272788	13273075	.	+	0	Parent=Os01t0337900-01
Chr01	irgsp1_rep	CDS	13275504	13275650	.	+	0	Parent=Os01t0337900-01
Chr01	irgsp1_rep	CDS	13275919	13276053	.	+	0	Parent=Os01t0337900-01
Chr01	irgsp1_rep	CDS	13276465	13276582	.	+	0	Parent=Os01t0337900-01
Chr01	irgsp1_rep	CDS	13278046	13278170	.	+	2	Parent=Os01t0337900-01
Chr01	irgsp1_rep	CDS	13278528	13278653	.	+	0	Parent=Os01t0337900-01
Chr01	irgsp1_rep	CDS	13278738	13278818	.	+	0	Parent=Os01t0337900-01
Chr01	irgsp1_rep	CDS	13279309	13279371	.	+	0	Parent=Os01t0337900-01
Chr01	irgsp1_rep	CDS	13279449	13279523	.	+	0	Parent=Os01t0337900-01
Chr01	irgsp1_rep	CDS	13280560	13280638	.	+	0	Parent=Os01t0337900-01
Chr01	irgsp1_rep	CDS	13280748	13280848	.	+	2	Parent=Os01t0337900-01
Chr01	irgsp1_rep	CDS	13281073	13281186	.	+	0	Parent=Os01t0337900-01
Chr01	irgsp1_rep	CDS	13281346	13281459	.	+	0	Parent=Os01t0337900-01
Chr01	irgsp1_rep	CDS	13281527	13281598	.	+	0	Parent=Os01t0337900-01
Chr01	irgsp1_rep	CDS	13281682	13281729	.	+	0	Parent=Os01t0337900-01
Chr01	irgsp1_rep	three_prime_UTR	13281730	13282008	.	+	.	Parent=Os01t0337900-01
Chr01	irgsp1_rep	mRNA	13286103	13288360	.	+	.	ID=Os01t0338000-01;Name=Os01t0338000-01;Locus_id=Os01g0338000;CGSNL Gene Symbol=SAR1A;CGSNL Gene Name=SECRETION-ASSOCIATED%2C RAS-RELATED PROTEIN 1A;Oryzabase Gene Symbol Synonym(s)=OsARL1e%2C ARL1e%2C OsSar1b%2C Sar1b%2C OsSar1a%2C Sar1a;Oryzabase Gene Name Synonym(s)=ARF-like protein 1e%2C "secretion-associated%2C Ras-related protein1a";Note=Similar to GTP-binding protein SAR1A.;Transcript_evidence=AK103351 (DDBJ%2C Best hit);ORF_evidence=NP_001149615.1 (RefSeq);GO=Biological Process: intracellular protein transport (GO:0006886),Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C SAR1-type (IPR006687),Small GTPase superfamily%2C ARF/SAR type (IPR006689);NIAS_FLcDNA=J033126I16;Oryzabase=21019;Expression=AK103351;TENOR=Os01t0338000-01;KEGG=Os01t0338000-01
Chr01	irgsp1_rep	five_prime_UTR	13286103	13286455	.	+	.	Parent=Os01t0338000-01
Chr01	irgsp1_rep	CDS	13286456	13286584	.	+	0	Parent=Os01t0338000-01
Chr01	irgsp1_rep	CDS	13286718	13286849	.	+	0	Parent=Os01t0338000-01
Chr01	irgsp1_rep	CDS	13287825	13288145	.	+	0	Parent=Os01t0338000-01
Chr01	irgsp1_rep	three_prime_UTR	13288146	13288360	.	+	.	Parent=Os01t0338000-01
Chr01	irgsp1_rep	mRNA	13286240	13288444	.	+	.	ID=Os01t0338000-02;Name=Os01t0338000-02;Locus_id=Os01g0338000;CGSNL Gene Symbol=SAR1A;CGSNL Gene Name=SECRETION-ASSOCIATED%2C RAS-RELATED PROTEIN 1A;Oryzabase Gene Symbol Synonym(s)=OsARL1e%2C ARL1e%2C OsSar1b%2C Sar1b%2C OsSar1a%2C Sar1a;Oryzabase Gene Name Synonym(s)=ARF-like protein 1e%2C "secretion-associated%2C Ras-related protein1a";Note=Similar to GTP-binding protein SAR1A.;Transcript_evidence=AK112012 (DDBJ%2C Best hit);ORF_evidence=NP_001149615.1 (RefSeq);GO=Biological Process: intracellular protein transport (GO:0006886),Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C SAR1-type (IPR006687),Small GTPase superfamily%2C ARF/SAR type (IPR006689);NIAS_FLcDNA=006-210-H07;Oryzabase=21019;Expression=AK112012;TENOR=Os01t0338000-02;KEGG=Os01t0338000-02
Chr01	irgsp1_rep	five_prime_UTR	13286240	13286455	.	+	.	Parent=Os01t0338000-02
Chr01	irgsp1_rep	CDS	13286456	13286584	.	+	0	Parent=Os01t0338000-02
Chr01	irgsp1_rep	CDS	13286718	13286849	.	+	0	Parent=Os01t0338000-02
Chr01	irgsp1_rep	CDS	13287825	13288145	.	+	0	Parent=Os01t0338000-02
Chr01	irgsp1_rep	three_prime_UTR	13288146	13288444	.	+	.	Parent=Os01t0338000-02
Chr01	irgsp1_rep	mRNA	13291658	13294473	.	+	.	ID=Os01t0338100-00;Name=Os01t0338100-00;Locus_id=Os01g0338100;Note=Similar to Transcription initiation factor IID%2C 18kD subunit family protein.;Transcript_evidence=EU964411 (DDBJ);ORF_evidence=B6T8G1 (UniProt);GO=Biological Process: transcription from RNA polymerase II promoter (GO:0006366),Molecular Function: DNA binding (GO:0003677);InterPro=Transcription initiation factor IID%2C 18kDa subunit (IPR003195),Histone-fold (IPR009072);TENOR=Os01t0338100-00;KEGG=Os01t0338100-00
Chr01	irgsp1_rep	CDS	13291658	13291862	.	+	0	Parent=Os01t0338100-00
Chr01	irgsp1_rep	CDS	13291948	13291985	.	+	2	Parent=Os01t0338100-00
Chr01	irgsp1_rep	CDS	13292238	13292297	.	+	0	Parent=Os01t0338100-00
Chr01	irgsp1_rep	CDS	13294193	13294267	.	+	0	Parent=Os01t0338100-00
Chr01	irgsp1_rep	CDS	13294354	13294467	.	+	0	Parent=Os01t0338100-00
Chr01	irgsp1_rep	three_prime_UTR	13294468	13294473	.	+	.	Parent=Os01t0338100-00
Chr01	irgsp1_rep	mRNA	13291338	13294921	.	-	.	ID=Os01t0338150-01;Name=Os01t0338150-01;Locus_id=Os01g0338150;Note=Hypothetical gene.;Transcript_evidence=AK241271 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065132H24;TENOR=Os01t0338150-01;KEGG=Os01t0338150-01
Chr01	irgsp1_rep	five_prime_UTR	13294785	13294921	.	-	.	Parent=Os01t0338150-01
Chr01	irgsp1_rep	five_prime_UTR	13294354	13294622	.	-	.	Parent=Os01t0338150-01
Chr01	irgsp1_rep	five_prime_UTR	13292310	13294267	.	-	.	Parent=Os01t0338150-01
Chr01	irgsp1_rep	CDS	13292238	13292309	.	-	0	Parent=Os01t0338150-01
Chr01	irgsp1_rep	CDS	13291948	13291985	.	-	0	Parent=Os01t0338150-01
Chr01	irgsp1_rep	CDS	13291484	13291862	.	-	1	Parent=Os01t0338150-01
Chr01	irgsp1_rep	CDS	13291367	13291396	.	-	0	Parent=Os01t0338150-01
Chr01	irgsp1_rep	three_prime_UTR	13291338	13291366	.	-	.	Parent=Os01t0338150-01
Chr01	irgsp1_rep	mRNA	13296370	13305252	.	+	.	ID=Os01t0338200-01;Name=Os01t0338200-01;Locus_id=Os01g0338200;Note=Mov34/MPN/PAD-1 family protein.;Transcript_evidence=AK068083 (DDBJ%2C Best hit);ORF_evidence=NP_001149862.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Mov34/MPN/PAD-1 (IPR000555);NIAS_FLcDNA=J013131J21;Expression=AK068083;TENOR=Os01t0338200-01;KEGG=Os01t0338200-01 (EC:3.1.2.15)
Chr01	irgsp1_rep	five_prime_UTR	13296370	13296474	.	+	.	Parent=Os01t0338200-01
Chr01	irgsp1_rep	CDS	13296475	13296600	.	+	0	Parent=Os01t0338200-01
Chr01	irgsp1_rep	CDS	13296843	13296907	.	+	0	Parent=Os01t0338200-01
Chr01	irgsp1_rep	CDS	13296991	13297084	.	+	1	Parent=Os01t0338200-01
Chr01	irgsp1_rep	CDS	13297223	13297393	.	+	0	Parent=Os01t0338200-01
Chr01	irgsp1_rep	CDS	13297479	13297585	.	+	0	Parent=Os01t0338200-01
Chr01	irgsp1_rep	CDS	13298453	13298558	.	+	1	Parent=Os01t0338200-01
Chr01	irgsp1_rep	CDS	13298661	13298707	.	+	0	Parent=Os01t0338200-01
Chr01	irgsp1_rep	CDS	13300550	13300868	.	+	1	Parent=Os01t0338200-01
Chr01	irgsp1_rep	CDS	13301038	13301127	.	+	0	Parent=Os01t0338200-01
Chr01	irgsp1_rep	CDS	13301216	13301278	.	+	0	Parent=Os01t0338200-01
Chr01	irgsp1_rep	CDS	13301424	13301498	.	+	0	Parent=Os01t0338200-01
Chr01	irgsp1_rep	CDS	13302500	13302562	.	+	0	Parent=Os01t0338200-01
Chr01	irgsp1_rep	CDS	13304047	13304099	.	+	0	Parent=Os01t0338200-01
Chr01	irgsp1_rep	CDS	13304808	13304982	.	+	1	Parent=Os01t0338200-01
Chr01	irgsp1_rep	three_prime_UTR	13304983	13305252	.	+	.	Parent=Os01t0338200-01
Chr01	irgsp1_rep	mRNA	13311601	13317220	.	-	.	ID=Os01t0338401-01;Name=Os01t0338401-01;Locus_id=Os01g0338401;Note=Hypothetical gene.;Transcript_evidence=AK288215 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090010H14;TENOR=Os01t0338401-01;KEGG=Os01t0338401-01
Chr01	irgsp1_rep	five_prime_UTR	13315190	13317220	.	-	.	Parent=Os01t0338401-01
Chr01	irgsp1_rep	CDS	13314908	13315189	.	-	0	Parent=Os01t0338401-01
Chr01	irgsp1_rep	three_prime_UTR	13311601	13314907	.	-	.	Parent=Os01t0338401-01
Chr01	irgsp1_rep	mRNA	13319295	13323798	.	-	.	ID=Os01t0338600-01;Name=Os01t0338600-01;Locus_id=Os01g0338600;Note=Similar to cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes.;Transcript_evidence=AK066580 (DDBJ%2C Best hit);ORF_evidence=NP_001148764.1 (RefSeq);NIAS_FLcDNA=J013069G24;Expression=AK066580;TENOR=Os01t0338600-01;KEGG=Os01t0338600-01
Chr01	irgsp1_rep	five_prime_UTR	13323573	13323798	.	-	.	Parent=Os01t0338600-01
Chr01	irgsp1_rep	CDS	13323378	13323572	.	-	0	Parent=Os01t0338600-01
Chr01	irgsp1_rep	CDS	13321656	13321850	.	-	0	Parent=Os01t0338600-01
Chr01	irgsp1_rep	CDS	13321340	13321456	.	-	0	Parent=Os01t0338600-01
Chr01	irgsp1_rep	CDS	13321105	13321254	.	-	0	Parent=Os01t0338600-01
Chr01	irgsp1_rep	CDS	13320203	13320261	.	-	0	Parent=Os01t0338600-01
Chr01	irgsp1_rep	CDS	13319579	13319714	.	-	1	Parent=Os01t0338600-01
Chr01	irgsp1_rep	three_prime_UTR	13319295	13319578	.	-	.	Parent=Os01t0338600-01
Chr01	irgsp1_rep	mRNA	13321102	13321852	.	+	.	ID=Os01t0339001-00;Name=Os01t0339001-00;Locus_id=Os01g0339001;Note=Non-protein coding transcript.;Transcript_evidence=BT019046 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0339001-00
Chr01	irgsp1_rep	exon	13321102	13321254	.	+	.	Parent=Os01t0339001-00
Chr01	irgsp1_rep	exon	13321340	13321471	.	+	.	Parent=Os01t0339001-00
Chr01	irgsp1_rep	exon	13321671	13321852	.	+	.	Parent=Os01t0339001-00
Chr01	irgsp1_rep	mRNA	13342128	13342490	.	+	.	ID=Os01t0339400-00;Name=Os01t0339400-00;Locus_id=Os01g0339400;Oryzabase Gene Symbol Synonym(s)=OsCLE102%2C CLE102;Oryzabase Gene Name Synonym(s)=CLV3/ESR-related 102%2C CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 102;Note=Conserved hypothetical protein.;Transcript_evidence=AB332049 (DDBJ%2C Best hit);ORF_evidence=NP_001042945.1 (RefSeq);Oryzabase=14220;TENOR=Os01t0339400-00;KEGG=Os01t0339400-00
Chr01	irgsp1_rep	CDS	13342128	13342490	.	+	0	Parent=Os01t0339400-00
Chr01	irgsp1_rep	mRNA	13342969	13345864	.	-	.	ID=Os01t0339500-01;Name=Os01t0339500-01;Locus_id=Os01g0339500;CGSNL Gene Symbol=NAC30;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 30;Oryzabase Gene Symbol Synonym(s)=ONAC030%2C ONAC30;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 030%2C NAC domain-containing protein 30;Note=Similar to No apical meristem protein.;Transcript_evidence=AK066107 (DDBJ%2C Best hit);ORF_evidence=Q338H9 (UniProt);NIAS_FLcDNA=J013052A02;Oryzabase=15828;Expression=AK066107;TENOR=Os01t0339500-01;KEGG=Os01t0339500-01
Chr01	irgsp1_rep	five_prime_UTR	13345555	13345864	.	-	.	Parent=Os01t0339500-01
Chr01	irgsp1_rep	five_prime_UTR	13345285	13345466	.	-	.	Parent=Os01t0339500-01
Chr01	irgsp1_rep	CDS	13345066	13345284	.	-	0	Parent=Os01t0339500-01
Chr01	irgsp1_rep	CDS	13343070	13344233	.	-	0	Parent=Os01t0339500-01
Chr01	irgsp1_rep	three_prime_UTR	13342969	13343069	.	-	.	Parent=Os01t0339500-01
Chr01	irgsp1_rep	mRNA	13344958	13348414	.	+	.	ID=Os01t0339600-01;Name=Os01t0339600-01;Locus_id=Os01g0339600;Note=Proteasome assembly chaperone 3 domain containing protein.;Transcript_evidence=AK106772 (DDBJ%2C Best hit);ORF_evidence=Q8L401 (UniProt);InterPro=Proteasome assembly chaperone 3 (IPR018788);NIAS_FLcDNA=002-115-G01;Expression=AK106772;TENOR=Os01t0339600-01;KEGG=Os01t0339600-01
Chr01	irgsp1_rep	five_prime_UTR	13344958	13346120	.	+	.	Parent=Os01t0339600-01
Chr01	irgsp1_rep	CDS	13346121	13346165	.	+	0	Parent=Os01t0339600-01
Chr01	irgsp1_rep	CDS	13346507	13346554	.	+	0	Parent=Os01t0339600-01
Chr01	irgsp1_rep	CDS	13346643	13346689	.	+	0	Parent=Os01t0339600-01
Chr01	irgsp1_rep	CDS	13347119	13347179	.	+	1	Parent=Os01t0339600-01
Chr01	irgsp1_rep	CDS	13347257	13347304	.	+	0	Parent=Os01t0339600-01
Chr01	irgsp1_rep	three_prime_UTR	13347305	13348414	.	+	.	Parent=Os01t0339600-01
Chr01	irgsp1_rep	mRNA	13350181	13350781	.	+	.	ID=Os01t0339851-01;Name=Os01t0339851-01;Locus_id=Os01g0339851;Note=Conserved hypothetical protein.;Transcript_evidence=AK111706 (DDBJ%2C Best hit);ORF_evidence=Q654G5 (UniProt);NIAS_FLcDNA=J023012M11;TENOR=Os01t0339851-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	13350181	13350182	.	+	.	Parent=Os01t0339851-01
Chr01	irgsp1_rep	CDS	13350183	13350306	.	+	0	Parent=Os01t0339851-01
Chr01	irgsp1_rep	CDS	13350483	13350691	.	+	2	Parent=Os01t0339851-01
Chr01	irgsp1_rep	three_prime_UTR	13350692	13350781	.	+	.	Parent=Os01t0339851-01
Chr01	irgsp1_rep	mRNA	13353629	13357499	.	+	.	ID=Os01t0339900-01;Name=Os01t0339900-01;Locus_id=Os01g0339900;Oryzabase Gene Symbol Synonym(s)=PDIL2%3B2%2C PDIL2-2%2C PDIL 2-2%2C OsPDIL2-2;Oryzabase Gene Name Synonym(s)=PROTEIN DISULFIDE ISOMERASE-LIKE 2%3B2%2C PROTEIN DISULFIDE ISOMERASE-LIKE 2-2%2C PDI-like protein 2-2;Note=Thioredoxin domain 2 containing protein.;Transcript_evidence=AK066111 (DDBJ%2C Best hit);ORF_evidence=Q942L2 (UniProt);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Cellular Component: endoplasmic reticulum (GO:0005783),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035),Molecular Function: isomerase activity (GO:0016853);InterPro=Thioredoxin (IPR005746),Disulphide isomerase (IPR005788),Endoplasmic reticulum%2C protein ERp29%2C C-terminal (IPR011679),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766),Thioredoxin%2C conserved site (IPR017937);NIAS_FLcDNA=J013050J24;Oryzabase=11901;Expression=AK066111;TENOR=Os01t0339900-01;KEGG=Os01t0339900-01 (EC:5.3.4.1)
Chr01	irgsp1_rep	five_prime_UTR	13353629	13353740	.	+	.	Parent=Os01t0339900-01
Chr01	irgsp1_rep	CDS	13353741	13353928	.	+	0	Parent=Os01t0339900-01
Chr01	irgsp1_rep	CDS	13355054	13355138	.	+	1	Parent=Os01t0339900-01
Chr01	irgsp1_rep	CDS	13355332	13355429	.	+	0	Parent=Os01t0339900-01
Chr01	irgsp1_rep	CDS	13355516	13355571	.	+	1	Parent=Os01t0339900-01
Chr01	irgsp1_rep	CDS	13355785	13355902	.	+	2	Parent=Os01t0339900-01
Chr01	irgsp1_rep	CDS	13356010	13356037	.	+	1	Parent=Os01t0339900-01
Chr01	irgsp1_rep	CDS	13356142	13356233	.	+	0	Parent=Os01t0339900-01
Chr01	irgsp1_rep	CDS	13356442	13356598	.	+	1	Parent=Os01t0339900-01
Chr01	irgsp1_rep	CDS	13356690	13356814	.	+	0	Parent=Os01t0339900-01
Chr01	irgsp1_rep	CDS	13356906	13357005	.	+	1	Parent=Os01t0339900-01
Chr01	irgsp1_rep	CDS	13357112	13357180	.	+	0	Parent=Os01t0339900-01
Chr01	irgsp1_rep	three_prime_UTR	13357181	13357499	.	+	.	Parent=Os01t0339900-01
Chr01	irgsp1_rep	mRNA	13355416	13358592	.	-	.	ID=Os01t0339950-01;Name=Os01t0339950-01;Locus_id=Os01g0339950;Note=Non-protein coding transcript.;Transcript_evidence=AK288856 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090076E17;TENOR=Os01t0339950-01
Chr01	irgsp1_rep	exon	13355416	13358592	.	-	.	Parent=Os01t0339950-01
Chr01	irgsp1_rep	mRNA	13363638	13364930	.	+	.	ID=Os01t0340100-00;Name=Os01t0340100-00;Locus_id=Os01g0340100;CGSNL Gene Symbol=MADS93;CGSNL Gene Name=MADS BOX GENE 93;Oryzabase Gene Symbol Synonym(s)=OsMADS93;Oryzabase Gene Name Synonym(s)=MADS box gene93%2C MADS box gene 93%2C MADS-box transcription factor 93;Note=Transcription factor%2C MADS-box domain containing protein.;Transcript_evidence=AK376398 (DDBJ);ORF_evidence=Q942L1 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box (IPR002100);Oryzabase=12329;TENOR=Os01t0340100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	13363638	13363706	.	+	.	Parent=Os01t0340100-00
Chr01	irgsp1_rep	CDS	13363707	13364930	.	+	0	Parent=Os01t0340100-00
Chr01	irgsp1_rep	mRNA	13373620	13374471	.	+	.	ID=Os01t0340400-00;Name=Os01t0340400-00;Locus_id=Os01g0340400;CGSNL Gene Symbol=MADS95;CGSNL Gene Name=MADS BOX GENE 95;Oryzabase Gene Symbol Synonym(s)=OsMADS95;Oryzabase Gene Name Synonym(s)=MADS box gene95%2C MADS box gene 95%2C MADS-box transcription factor 95;Note=Transcription factor%2C MADS-box domain containing protein.;Transcript_evidence=AK376398 (DDBJ);ORF_evidence=A2ZSQ9 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box (IPR002100);Oryzabase=12331;TENOR=Os01t0340400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	13373620	13374081	.	+	0	Parent=Os01t0340400-00
Chr01	irgsp1_rep	three_prime_UTR	13374082	13374471	.	+	.	Parent=Os01t0340400-00
Chr01	irgsp1_rep	mRNA	13396264	13397109	.	-	.	ID=Os01t0340600-00;Name=Os01t0340600-00;Locus_id=Os01g0340600;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001042950.1 (RefSeq);TENOR=Os01t0340600-00
Chr01	irgsp1_rep	CDS	13396264	13397109	.	-	0	Parent=Os01t0340600-00
Chr01	irgsp1_rep	mRNA	13397235	13401925	.	+	.	ID=Os01t0340801-01;Name=Os01t0340801-01;Locus_id=Os01g0340801;Note=Non-protein coding transcript.;Transcript_evidence=AK288772 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090068C09;TENOR=Os01t0340801-01
Chr01	irgsp1_rep	exon	13397235	13401925	.	+	.	Parent=Os01t0340801-01
Chr01	irgsp1_rep	mRNA	13422910	13424625	.	-	.	ID=Os01t0341000-00;Name=Os01t0341000-00;Locus_id=Os01g0341000;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001042951.1 (RefSeq);TENOR=Os01t0341000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	13423529	13424625	.	-	0	Parent=Os01t0341000-00
Chr01	irgsp1_rep	CDS	13422910	13423147	.	-	1	Parent=Os01t0341000-00
Chr01	irgsp1_rep	mRNA	13437009	13438567	.	-	.	ID=Os01t0341200-01;Name=Os01t0341200-01;Locus_id=Os01g0341200;Note=Tubulin%2C conserved site domain containing protein.;Transcript_evidence=AK068939 (DDBJ%2C Best hit),AK121837 (DDBJ%2C Best hit);ORF_evidence=A2ZSR3 (UniProt);NIAS_FLcDNA=J013170C22,J033100K08;Expression=AK068939;TENOR=Os01t0341200-01;KEGG=Os01t0341200-01
Chr01	irgsp1_rep	five_prime_UTR	13438484	13438567	.	-	.	Parent=Os01t0341200-01
Chr01	irgsp1_rep	CDS	13437065	13438483	.	-	0	Parent=Os01t0341200-01
Chr01	irgsp1_rep	three_prime_UTR	13437009	13437064	.	-	.	Parent=Os01t0341200-01
Chr01	irgsp1_rep	mRNA	13442503	13443528	.	+	.	ID=Os01t0341300-01;Name=Os01t0341300-01;Locus_id=Os01g0341300;Note=Conserved hypothetical protein.;Transcript_evidence=AK070629 (DDBJ%2C Best hit);ORF_evidence=B8A7H5 (UniProt);NIAS_FLcDNA=J023055J16;Expression=AK070629;TENOR=Os01t0341300-01;KEGG=Os01t0341300-01
Chr01	irgsp1_rep	five_prime_UTR	13442503	13442563	.	+	.	Parent=Os01t0341300-01
Chr01	irgsp1_rep	CDS	13442564	13443313	.	+	0	Parent=Os01t0341300-01
Chr01	irgsp1_rep	three_prime_UTR	13443314	13443528	.	+	.	Parent=Os01t0341300-01
Chr01	irgsp1_rep	mRNA	13487892	13506871	.	-	.	ID=Os01t0341750-00;Name=Os01t0341750-00;Locus_id=Os01g0341750;Note=Hypothetical protein.;Transcript_evidence=tplb0040j01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0341750-00
Chr01	irgsp1_rep	five_prime_UTR	13506663	13506871	.	-	.	Parent=Os01t0341750-00
Chr01	irgsp1_rep	five_prime_UTR	13506385	13506543	.	-	.	Parent=Os01t0341750-00
Chr01	irgsp1_rep	five_prime_UTR	13490027	13490297	.	-	.	Parent=Os01t0341750-00
Chr01	irgsp1_rep	five_prime_UTR	13489707	13489896	.	-	.	Parent=Os01t0341750-00
Chr01	irgsp1_rep	five_prime_UTR	13489253	13489559	.	-	.	Parent=Os01t0341750-00
Chr01	irgsp1_rep	five_prime_UTR	13488588	13488768	.	-	.	Parent=Os01t0341750-00
Chr01	irgsp1_rep	CDS	13488291	13488587	.	-	0	Parent=Os01t0341750-00
Chr01	irgsp1_rep	three_prime_UTR	13487892	13488290	.	-	.	Parent=Os01t0341750-00
Chr01	irgsp1_rep	mRNA	13508323	13508882	.	-	.	ID=Os01t0342500-00;Name=Os01t0342500-00;Locus_id=Os01g0342500;Note=Hypothetical conserved gene.;Transcript_evidence=CT834861 (DDBJ%2C Best hit);ORF_evidence=Q5ZBD3 (UniProt);TENOR=Os01t0342500-00;KEGG=Os01t0342500-00
Chr01	irgsp1_rep	five_prime_UTR	13508881	13508882	.	-	.	Parent=Os01t0342500-00
Chr01	irgsp1_rep	CDS	13508548	13508880	.	-	0	Parent=Os01t0342500-00
Chr01	irgsp1_rep	three_prime_UTR	13508323	13508547	.	-	.	Parent=Os01t0342500-00
Chr01	irgsp1_rep	mRNA	13524554	13528480	.	+	.	ID=Os01t0342750-01;Name=Os01t0342750-01;Locus_id=Os01g0342750;Note=Hypothetical conserved gene.;Transcript_evidence=AK106603 (DDBJ%2C Best hit);ORF_evidence=NP_001043541.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC-2 type transporter (IPR013525),Plant PDR ABC transporter associated (IPR013581);NIAS_FLcDNA=002-112-D10;Expression=AK106603;TENOR=Os01t0342750-01;KEGG=Os01t0342750-01
Chr01	irgsp1_rep	CDS	13524554	13524656	.	+	0	Parent=Os01t0342750-01
Chr01	irgsp1_rep	CDS	13524773	13525017	.	+	2	Parent=Os01t0342750-01
Chr01	irgsp1_rep	CDS	13525116	13525448	.	+	0	Parent=Os01t0342750-01
Chr01	irgsp1_rep	CDS	13525549	13525839	.	+	0	Parent=Os01t0342750-01
Chr01	irgsp1_rep	CDS	13525937	13526020	.	+	0	Parent=Os01t0342750-01
Chr01	irgsp1_rep	CDS	13526122	13526255	.	+	0	Parent=Os01t0342750-01
Chr01	irgsp1_rep	CDS	13526361	13526588	.	+	1	Parent=Os01t0342750-01
Chr01	irgsp1_rep	CDS	13526681	13526852	.	+	1	Parent=Os01t0342750-01
Chr01	irgsp1_rep	CDS	13527659	13527913	.	+	0	Parent=Os01t0342750-01
Chr01	irgsp1_rep	CDS	13528012	13528272	.	+	0	Parent=Os01t0342750-01
Chr01	irgsp1_rep	three_prime_UTR	13528273	13528480	.	+	.	Parent=Os01t0342750-01
Chr01	irgsp1_rep	mRNA	13531040	13531777	.	-	.	ID=Os01t0342800-01;Name=Os01t0342800-01;Locus_id=Os01g0342800;Note=Similar to UPF0631 protein.;Transcript_evidence=AK241039 (DDBJ%2C Best hit);ORF_evidence=A9SNJ1 (UniProt);NIAS_FLcDNA=J065059I08;TENOR=Os01t0342800-01;KEGG=Os01t0342800-01
Chr01	irgsp1_rep	five_prime_UTR	13531728	13531777	.	-	.	Parent=Os01t0342800-01
Chr01	irgsp1_rep	CDS	13531536	13531727	.	-	0	Parent=Os01t0342800-01
Chr01	irgsp1_rep	CDS	13531349	13531417	.	-	0	Parent=Os01t0342800-01
Chr01	irgsp1_rep	three_prime_UTR	13531040	13531348	.	-	.	Parent=Os01t0342800-01
Chr01	irgsp1_rep	mRNA	13539772	13541921	.	+	.	ID=Os01t0342900-01;Name=Os01t0342900-01;Locus_id=Os01g0342900;Note=Similar to Adenosine monophosphate binding protein 1 AMPBP1.;Transcript_evidence=AK063921 (DDBJ%2C Best hit);ORF_evidence=B6ST13 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873),AMP-binding%2C conserved site (IPR020845);NIAS_FLcDNA=001-123-B10;Expression=AK063921;TENOR=Os01t0342900-01;KEGG=Os01t0342900-01
Chr01	irgsp1_rep	five_prime_UTR	13539772	13539842	.	+	.	Parent=Os01t0342900-01
Chr01	irgsp1_rep	CDS	13539843	13540061	.	+	0	Parent=Os01t0342900-01
Chr01	irgsp1_rep	CDS	13540188	13541762	.	+	0	Parent=Os01t0342900-01
Chr01	irgsp1_rep	three_prime_UTR	13541763	13541921	.	+	.	Parent=Os01t0342900-01
Chr01	irgsp1_rep	mRNA	13540185	13541690	.	-	.	ID=Os01t0343001-00;Name=Os01t0343001-00;Locus_id=Os01g0343001;Note=Hypothetical gene.;Transcript_evidence=EU941562 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0343001-00;KEGG=Os01t0343001-00
Chr01	irgsp1_rep	CDS	13540494	13541690	.	-	0	Parent=Os01t0343001-00
Chr01	irgsp1_rep	CDS	13540185	13540433	.	-	0	Parent=Os01t0343001-00
Chr01	irgsp1_rep	mRNA	13550372	13556984	.	+	.	ID=Os01t0343100-01;Name=Os01t0343100-01;Locus_id=Os01g0343100;Note=Protein of unknown function DUF594 family protein.;Transcript_evidence=AK240925 (DDBJ%2C Best hit);ORF_evidence=NP_001172321.1 (RefSeq);InterPro=Protein of unknown function DUF594 (IPR007658);NIAS_FLcDNA=J065039P06;TENOR=Os01t0343100-01;KEGG=Os01t0343100-01
Chr01	irgsp1_rep	five_prime_UTR	13550372	13550499	.	+	.	Parent=Os01t0343100-01
Chr01	irgsp1_rep	CDS	13550500	13550518	.	+	0	Parent=Os01t0343100-01
Chr01	irgsp1_rep	CDS	13554626	13556820	.	+	2	Parent=Os01t0343100-01
Chr01	irgsp1_rep	three_prime_UTR	13556821	13556984	.	+	.	Parent=Os01t0343100-01
Chr01	irgsp1_rep	mRNA	13560832	13566870	.	+	.	ID=Os01t0343200-01;Name=Os01t0343200-01;Locus_id=Os01g0343200;Note=Similar to Importin alpha-1b subunit.;Transcript_evidence=AK100070 (DDBJ%2C Best hit);ORF_evidence=A1YUL9 (UniProt);GO=Biological Process: protein import into nucleus (GO:0006606),Biological Process: intracellular protein transport (GO:0006886),Cellular Component: nucleus (GO:0005634),Cellular Component: cytoplasm (GO:0005737),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515),Molecular Function: protein transporter activity (GO:0008565);InterPro=Armadillo (IPR000225),Importin-alpha%2C importin-beta-binding domain (IPR002652),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013169D11;Expression=AK100070;TENOR=Os01t0343200-01;KEGG=Os01t0343200-01
Chr01	irgsp1_rep	five_prime_UTR	13560832	13560953	.	+	.	Parent=Os01t0343200-01
Chr01	irgsp1_rep	CDS	13560954	13561172	.	+	0	Parent=Os01t0343200-01
Chr01	irgsp1_rep	CDS	13561282	13561378	.	+	0	Parent=Os01t0343200-01
Chr01	irgsp1_rep	CDS	13562737	13562828	.	+	2	Parent=Os01t0343200-01
Chr01	irgsp1_rep	CDS	13563049	13563177	.	+	0	Parent=Os01t0343200-01
Chr01	irgsp1_rep	CDS	13563288	13563476	.	+	0	Parent=Os01t0343200-01
Chr01	irgsp1_rep	CDS	13563560	13563723	.	+	0	Parent=Os01t0343200-01
Chr01	irgsp1_rep	CDS	13563812	13563890	.	+	1	Parent=Os01t0343200-01
Chr01	irgsp1_rep	CDS	13565377	13565508	.	+	0	Parent=Os01t0343200-01
Chr01	irgsp1_rep	CDS	13565681	13565808	.	+	0	Parent=Os01t0343200-01
Chr01	irgsp1_rep	CDS	13565906	13566342	.	+	1	Parent=Os01t0343200-01
Chr01	irgsp1_rep	CDS	13566433	13566461	.	+	2	Parent=Os01t0343200-01
Chr01	irgsp1_rep	three_prime_UTR	13566462	13566870	.	+	.	Parent=Os01t0343200-01
Chr01	irgsp1_rep	mRNA	13565773	13566871	.	+	.	ID=Os01t0343200-02;Name=Os01t0343200-02;Locus_id=Os01g0343200;Note=AT-IMP (Arabidopsis thaliana importin alpha)%3B protein transporter.;Transcript_evidence=AK058467 (DDBJ%2C Best hit);ORF_evidence=XP_002882488.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=001-016-B04;Expression=AK058467;TENOR=Os01t0343200-02;KEGG=Os01t0343200-02
Chr01	irgsp1_rep	five_prime_UTR	13565773	13565773	.	+	.	Parent=Os01t0343200-02
Chr01	irgsp1_rep	CDS	13565774	13565808	.	+	0	Parent=Os01t0343200-02
Chr01	irgsp1_rep	CDS	13565906	13566342	.	+	1	Parent=Os01t0343200-02
Chr01	irgsp1_rep	CDS	13566433	13566461	.	+	2	Parent=Os01t0343200-02
Chr01	irgsp1_rep	three_prime_UTR	13566462	13566871	.	+	.	Parent=Os01t0343200-02
Chr01	irgsp1_rep	mRNA	13570702	13573119	.	+	.	ID=Os01t0343300-01;Name=Os01t0343300-01;Locus_id=Os01g0343300;RAP-DB Gene Symbol Synonym(s)=OsGATA8;CGSNL Gene Symbol=GATA8;CGSNL Gene Name=GATA TRANSCRIPTION FACTOR 8;Oryzabase Gene Symbol Synonym(s)=OsGATA8%2C OsGATA14%2C GATA14%2C OsGATA8a%2C OsGATA8b%2C DLN10%2C OsDLN10;Oryzabase Gene Name Synonym(s)=GATA transcription factor 8%2C GATA factor 8%2C DLN repressor 10%2C DLN motif protein 10;Note=GATA transcription factor%2C Tolerance to abiotic stresses (salinity%2C drought%2C and ABA)%2C Seed development;Transcript_evidence=AK067244;ORF_evidence=Q8LQW5;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Zinc finger%2C NHR/GATA-type (IPR013088),Zinc finger%2C GATA-type (IPR000679);NIAS_FLcDNA=J013098C17;Manual Curation=October 17%2C 2019;Literature_PMID=31613368;Oryzabase=20493;Expression=AK067244;TENOR=Os01t0343300-01;KEGG=Os01t0343300-01;Subcellular location=nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	13570702	13570825	.	+	.	Parent=Os01t0343300-01
Chr01	irgsp1_rep	CDS	13570826	13570846	.	+	0	Parent=Os01t0343300-01
Chr01	irgsp1_rep	CDS	13570977	13571075	.	+	0	Parent=Os01t0343300-01
Chr01	irgsp1_rep	CDS	13572381	13572656	.	+	0	Parent=Os01t0343300-01
Chr01	irgsp1_rep	three_prime_UTR	13572657	13573119	.	+	.	Parent=Os01t0343300-01
Chr01	irgsp1_rep	mRNA	13572351	13572654	.	-	.	ID=Os01t0343350-00;Name=Os01t0343350-00;Locus_id=Os01g0343350;Note=Hypothetical protein.;Transcript_evidence=EU970609 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0343350-00
Chr01	irgsp1_rep	five_prime_UTR	13572653	13572654	.	-	.	Parent=Os01t0343350-00
Chr01	irgsp1_rep	CDS	13572351	13572652	.	-	0	Parent=Os01t0343350-00
Chr01	irgsp1_rep	mRNA	13580715	13581665	.	+	.	ID=Os01t0343400-00;Name=Os01t0343400-00;Locus_id=Os01g0343400;Note=Conserved hypothetical protein.;Transcript_evidence=BT065522 (DDBJ);ORF_evidence=Q5ZBC9 (UniProt);TENOR=Os01t0343400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	13580715	13581209	.	+	0	Parent=Os01t0343400-00
Chr01	irgsp1_rep	three_prime_UTR	13581210	13581665	.	+	.	Parent=Os01t0343400-00
Chr01	irgsp1_rep	mRNA	13582038	13584915	.	-	.	ID=Os01t0343500-01;Name=Os01t0343500-01;Locus_id=Os01g0343500;Note=Similar to TPR repeat.;Transcript_evidence=AK071988 (DDBJ%2C Best hit);ORF_evidence=B6SRQ6 (UniProt);NIAS_FLcDNA=J013094L10;Expression=AK071988;TENOR=Os01t0343500-01;KEGG=Os01t0343500-01
Chr01	irgsp1_rep	five_prime_UTR	13584841	13584915	.	-	.	Parent=Os01t0343500-01
Chr01	irgsp1_rep	CDS	13584574	13584840	.	-	0	Parent=Os01t0343500-01
Chr01	irgsp1_rep	CDS	13584299	13584379	.	-	0	Parent=Os01t0343500-01
Chr01	irgsp1_rep	three_prime_UTR	13583921	13584298	.	-	.	Parent=Os01t0343500-01
Chr01	irgsp1_rep	three_prime_UTR	13583054	13583296	.	-	.	Parent=Os01t0343500-01
Chr01	irgsp1_rep	three_prime_UTR	13582563	13582624	.	-	.	Parent=Os01t0343500-01
Chr01	irgsp1_rep	three_prime_UTR	13582038	13582468	.	-	.	Parent=Os01t0343500-01
Chr01	irgsp1_rep	mRNA	13584186	13584856	.	+	.	ID=Os01t0343780-00;Name=Os01t0343780-00;Locus_id=Os01g0343780;Note=Hypothetical gene.;Transcript_evidence=EU971731 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0343780-00
Chr01	irgsp1_rep	five_prime_UTR	13584186	13584378	.	+	.	Parent=Os01t0343780-00
Chr01	irgsp1_rep	five_prime_UTR	13584573	13584589	.	+	.	Parent=Os01t0343780-00
Chr01	irgsp1_rep	CDS	13584590	13584856	.	+	0	Parent=Os01t0343780-00
Chr01	irgsp1_rep	mRNA	13608184	13614290	.	-	.	ID=Os01t0344620-01;Name=Os01t0344620-01;Locus_id=Os01g0344620;Note=Hypothetical gene.;Transcript_evidence=AK288572 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090048G20;TENOR=Os01t0344620-01;KEGG=Os01t0344620-01
Chr01	irgsp1_rep	five_prime_UTR	13614182	13614290	.	-	.	Parent=Os01t0344620-01
Chr01	irgsp1_rep	CDS	13613801	13614181	.	-	0	Parent=Os01t0344620-01
Chr01	irgsp1_rep	three_prime_UTR	13608184	13613800	.	-	.	Parent=Os01t0344620-01
Chr01	irgsp1_rep	mRNA	13770746	13772078	.	+	.	ID=Os01t0346250-00;Name=Os01t0346250-00;Locus_id=Os01g0346250;Note=Conserved hypothetical protein.;Transcript_evidence=BT035059 (DDBJ);ORF_evidence=NP_001172323.1 (RefSeq);TENOR=Os01t0346250-00
Chr01	irgsp1_rep	CDS	13770746	13771276	.	+	0	Parent=Os01t0346250-00
Chr01	irgsp1_rep	CDS	13771346	13772062	.	+	0	Parent=Os01t0346250-00
Chr01	irgsp1_rep	three_prime_UTR	13772063	13772078	.	+	.	Parent=Os01t0346250-00
Chr01	irgsp1_rep	mRNA	13642909	13644537	.	-	.	ID=Os01t0346400-01;Name=Os01t0346400-01;Locus_id=Os01g0346400;Note=Conserved hypothetical protein.;Transcript_evidence=AK243147 (DDBJ%2C Best hit);ORF_evidence=NP_001172322.1 (RefSeq);NIAS_FLcDNA=J100032G11;TENOR=Os01t0346400-01;KEGG=Os01t0346400-01
Chr01	irgsp1_rep	five_prime_UTR	13644492	13644537	.	-	.	Parent=Os01t0346400-01
Chr01	irgsp1_rep	CDS	13643910	13644491	.	-	0	Parent=Os01t0346400-01
Chr01	irgsp1_rep	three_prime_UTR	13642909	13643909	.	-	.	Parent=Os01t0346400-01
Chr01	irgsp1_rep	mRNA	13775186	13776654	.	+	.	ID=Os01t0346600-01;Name=Os01t0346600-01;Locus_id=Os01g0346600;Note=Conserved hypothetical protein.;Transcript_evidence=AK105649 (DDBJ%2C Best hit);ORF_evidence=A2WPL9 (UniProt);NIAS_FLcDNA=001-200-F10;TENOR=Os01t0346600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	13775186	13775347	.	+	.	Parent=Os01t0346600-01
Chr01	irgsp1_rep	CDS	13775348	13775947	.	+	0	Parent=Os01t0346600-01
Chr01	irgsp1_rep	three_prime_UTR	13775948	13776654	.	+	.	Parent=Os01t0346600-01
Chr01	irgsp1_rep	mRNA	13778764	13779786	.	-	.	ID=Os01t0346700-01;Name=Os01t0346700-01;Locus_id=Os01g0346700;Note=Conserved hypothetical protein.;Transcript_evidence=AK071793 (DDBJ%2C Best hit);ORF_evidence=A2WPM1 (UniProt);NIAS_FLcDNA=J023114F06;Expression=AK071793;TENOR=Os01t0346700-01;KEGG=Os01t0346700-01
Chr01	irgsp1_rep	five_prime_UTR	13779694	13779786	.	-	.	Parent=Os01t0346700-01
Chr01	irgsp1_rep	CDS	13779163	13779693	.	-	0	Parent=Os01t0346700-01
Chr01	irgsp1_rep	three_prime_UTR	13778764	13779162	.	-	.	Parent=Os01t0346700-01
Chr01	irgsp1_rep	mRNA	13788467	13789890	.	+	.	ID=Os01t0346900-01;Name=Os01t0346900-01;Locus_id=Os01g0346900;RAP-DB Gene Symbol Synonym(s)=NF-YC10%2C OsNF-YC10;RAP-DB Gene Name Synonym(s)=Nuclear factor-Y transcription factor subunit C10;CGSNL Gene Symbol=HAP5I;CGSNL Gene Name=HAP5I SUBUNIT OF CCAAT-BOX BINDING COMPLEX;Oryzabase Gene Symbol Synonym(s)=OsEnS-5%2C OsHAP5I%2C OsNF-YC10%2C NF-YC10%2C NFYC10;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 5%2C NUCLEAR FACTOR-Y subunit C10%2C NUCLEAR FACTOR-Y subunit NF-YC10%2C NF-YC transcription factor 10%2C NF-YC subunit 10%2C NF-YC family 10;Note=Nuclear factor-Y transcription factor%2C Regulation of grain size and shape;Transcript_evidence=Inferred from literature;ORF_evidence=Q0JMZ9;GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein heterodimerization activity (GO:0046982),Cellular Component: nucleosome (GO:0000786);InterPro=Histone-fold (IPR009072),Histone H2A/H2B/H3 (IPR007125);Manual Curation=June 21%2C 2019;Literature_PMID=31211389,30824000,29514259;Oryzabase=18352;Subcellular location=nucleus (GO:0005634)
Chr01	irgsp1_rep	CDS	13788467	13789801	.	+	0	Parent=Os01t0346900-01
Chr01	irgsp1_rep	three_prime_UTR	13789802	13789890	.	+	.	Parent=Os01t0346900-01
Chr01	irgsp1_rep	mRNA	13794854	13799906	.	+	.	ID=Os01t0347000-01;Name=Os01t0347000-01;Locus_id=Os01g0347000;Oryzabase Gene Symbol Synonym(s)=OsPHS1b%2C OsPP4%2C OsSTA14;Oryzabase Gene Name Synonym(s)=Protein phosphatase 4;Note=Similar to PROPYZAMIDE-HTPERSENSITIVE 1.;Transcript_evidence=AK069585 (DDBJ%2C Best hit);ORF_evidence=NP_001031933.1 (RefSeq);GO=Biological Process: protein dephosphorylation (GO:0006470),Biological Process: dephosphorylation (GO:0016311),Cellular Component: intracellular (GO:0005622),Molecular Function: protein tyrosine phosphatase activity (GO:0004725),Molecular Function: protein tyrosine/serine/threonine phosphatase activity (GO:0008138),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773),Molecular Function: phosphatase activity (GO:0016791);InterPro=Dual specificity phosphatase%2C catalytic domain (IPR000340),Protein-tyrosine/Dual-specificity phosphatase (IPR000387),Phosphatidylinositol 3-/4-kinase%2C catalytic (IPR000403),Protein kinase-like domain (IPR011009),Actin-fragmin kinase%2C catalytic (IPR015275),Zinc finger%2C C2H2-like (IPR015880),Protein-tyrosine phosphatase%2C active site (IPR016130),Dual specificity phosphatase%2C subgroup%2C catalytic domain (IPR020422);NIAS_FLcDNA=J023022M24;Oryzabase=10266;Expression=AK069585;TENOR=Os01t0347000-01;KEGG=Os01t0347000-01
Chr01	irgsp1_rep	five_prime_UTR	13794854	13794861	.	+	.	Parent=Os01t0347000-01
Chr01	irgsp1_rep	CDS	13794862	13794912	.	+	0	Parent=Os01t0347000-01
Chr01	irgsp1_rep	CDS	13795021	13795136	.	+	0	Parent=Os01t0347000-01
Chr01	irgsp1_rep	CDS	13795523	13795745	.	+	1	Parent=Os01t0347000-01
Chr01	irgsp1_rep	CDS	13796143	13796319	.	+	0	Parent=Os01t0347000-01
Chr01	irgsp1_rep	CDS	13796398	13796558	.	+	0	Parent=Os01t0347000-01
Chr01	irgsp1_rep	CDS	13796641	13797640	.	+	1	Parent=Os01t0347000-01
Chr01	irgsp1_rep	CDS	13798044	13798190	.	+	0	Parent=Os01t0347000-01
Chr01	irgsp1_rep	CDS	13798270	13798497	.	+	0	Parent=Os01t0347000-01
Chr01	irgsp1_rep	CDS	13798592	13798749	.	+	0	Parent=Os01t0347000-01
Chr01	irgsp1_rep	CDS	13798928	13799282	.	+	1	Parent=Os01t0347000-01
Chr01	irgsp1_rep	three_prime_UTR	13799283	13799906	.	+	.	Parent=Os01t0347000-01
Chr01	irgsp1_rep	mRNA	13799955	13804764	.	-	.	ID=Os01t0347100-01;Name=Os01t0347100-01;Locus_id=Os01g0347100;Note=Protein of unknown function DUF1399 family protein.;Transcript_evidence=AK100716 (DDBJ%2C Best hit);ORF_evidence=A2ZSU8 (UniProt);InterPro=Protein of unknown function DUF1399 (IPR009836);NIAS_FLcDNA=J023115O05;Expression=AK100716;TENOR=Os01t0347100-01;KEGG=Os01t0347100-01
Chr01	irgsp1_rep	five_prime_UTR	13804626	13804764	.	-	.	Parent=Os01t0347100-01
Chr01	irgsp1_rep	CDS	13804353	13804625	.	-	0	Parent=Os01t0347100-01
Chr01	irgsp1_rep	CDS	13803518	13803913	.	-	0	Parent=Os01t0347100-01
Chr01	irgsp1_rep	CDS	13803152	13803433	.	-	0	Parent=Os01t0347100-01
Chr01	irgsp1_rep	CDS	13801762	13802270	.	-	0	Parent=Os01t0347100-01
Chr01	irgsp1_rep	CDS	13801217	13801244	.	-	1	Parent=Os01t0347100-01
Chr01	irgsp1_rep	three_prime_UTR	13801119	13801216	.	-	.	Parent=Os01t0347100-01
Chr01	irgsp1_rep	three_prime_UTR	13800882	13801024	.	-	.	Parent=Os01t0347100-01
Chr01	irgsp1_rep	three_prime_UTR	13799955	13800772	.	-	.	Parent=Os01t0347100-01
Chr01	irgsp1_rep	mRNA	13803508	13804502	.	+	.	ID=Os01t0347150-00;Name=Os01t0347150-00;Locus_id=Os01g0347150;Note=Non-protein coding transcript.;Transcript_evidence=BT086894 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0347150-00
Chr01	irgsp1_rep	exon	13803508	13803912	.	+	.	Parent=Os01t0347150-00
Chr01	irgsp1_rep	exon	13804352	13804502	.	+	.	Parent=Os01t0347150-00
Chr01	irgsp1_rep	mRNA	13807525	13809820	.	-	.	ID=Os01t0347200-01;Name=Os01t0347200-01;Locus_id=Os01g0347200;Note=Conserved hypothetical protein.;Transcript_evidence=AK066458 (DDBJ%2C Best hit);ORF_evidence=B8A7J5 (UniProt);NIAS_FLcDNA=J013064I01;Expression=AK066458;TENOR=Os01t0347200-01;KEGG=Os01t0347200-01
Chr01	irgsp1_rep	five_prime_UTR	13809645	13809820	.	-	.	Parent=Os01t0347200-01
Chr01	irgsp1_rep	CDS	13809537	13809644	.	-	0	Parent=Os01t0347200-01
Chr01	irgsp1_rep	CDS	13807922	13809298	.	-	0	Parent=Os01t0347200-01
Chr01	irgsp1_rep	three_prime_UTR	13807525	13807921	.	-	.	Parent=Os01t0347200-01
Chr01	irgsp1_rep	mRNA	13815140	13817056	.	+	.	ID=Os01t0347300-01;Name=Os01t0347300-01;Locus_id=Os01g0347300;Note=Conserved hypothetical protein.;Transcript_evidence=AK241247 (DDBJ%2C Best hit);ORF_evidence=Q5Z8C6 (UniProt);NIAS_FLcDNA=J065129D14;TENOR=Os01t0347300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	13815140	13815165	.	+	.	Parent=Os01t0347300-01
Chr01	irgsp1_rep	CDS	13815166	13815259	.	+	0	Parent=Os01t0347300-01
Chr01	irgsp1_rep	CDS	13815348	13815409	.	+	2	Parent=Os01t0347300-01
Chr01	irgsp1_rep	CDS	13815928	13817056	.	+	0	Parent=Os01t0347300-01
Chr01	irgsp1_rep	mRNA	13838790	13839085	.	-	.	ID=Os01t0347500-00;Name=Os01t0347500-00;Locus_id=Os01g0347500;Note=Similar to Papain-like cysteine proteinase (Fragment).;Transcript_evidence=EF541166 (DDBJ%2C Best hit);ORF_evidence=B4ESG2 (UniProt);GO=Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase C1A%2C papain (IPR013128),Proteinase inhibitor I29%2C cathepsin propeptide (IPR013201);TENOR=Os01t0347500-00;KEGG=Os01t0347500-00
Chr01	irgsp1_rep	five_prime_UTR	13839084	13839085	.	-	.	Parent=Os01t0347500-00
Chr01	irgsp1_rep	CDS	13838790	13839083	.	-	0	Parent=Os01t0347500-00
Chr01	irgsp1_rep	mRNA	13842272	13843744	.	+	.	ID=Os01t0347600-01;Name=Os01t0347600-01;Locus_id=Os01g0347600;Note=Ervatamin B (EC 3.4.22.-) (ERV-B).;Transcript_evidence=AK243297 (DDBJ%2C Best hit);ORF_evidence=Q94CN8 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase%2C cysteine peptidase active site (IPR000169),Peptidase C1A%2C papain C-terminal (IPR000668),Peptidase C1A%2C papain (IPR013128),Proteinase inhibitor I29%2C cathepsin propeptide (IPR013201);NIAS_FLcDNA=J100053I01;TENOR=Os01t0347600-01;KEGG=Os01t0347600-01
Chr01	irgsp1_rep	five_prime_UTR	13842272	13842389	.	+	.	Parent=Os01t0347600-01
Chr01	irgsp1_rep	CDS	13842390	13842828	.	+	0	Parent=Os01t0347600-01
Chr01	irgsp1_rep	CDS	13842915	13843507	.	+	2	Parent=Os01t0347600-01
Chr01	irgsp1_rep	three_prime_UTR	13843508	13843744	.	+	.	Parent=Os01t0347600-01
Chr01	irgsp1_rep	mRNA	13859456	13859751	.	+	.	ID=Os01t0348000-00;Name=Os01t0348000-00;Locus_id=Os01g0348000;Note=Similar to Papain-like cysteine proteinase (Fragment).;Transcript_evidence=EF541166 (DDBJ%2C Best hit);ORF_evidence=B4ESG2 (UniProt);GO=Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase C1A%2C papain (IPR013128),Proteinase inhibitor I29%2C cathepsin propeptide (IPR013201);TENOR=Os01t0348000-00;KEGG=Os01t0348000-00
Chr01	irgsp1_rep	five_prime_UTR	13859456	13859457	.	+	.	Parent=Os01t0348000-00
Chr01	irgsp1_rep	CDS	13859458	13859751	.	+	0	Parent=Os01t0348000-00
Chr01	irgsp1_rep	mRNA	13887272	13893148	.	+	.	ID=Os01t0348600-01;Name=Os01t0348600-01;Locus_id=Os01g0348600;Note=Similar to MFP2 (Fatty acid multifunctional protein) (AtMFP2).;Transcript_evidence=AK100444 (DDBJ%2C Best hit);ORF_evidence=NP_001152306.1 (RefSeq);GO=Biological Process: fatty acid metabolic process (GO:0006631),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: 3-hydroxyacyl-CoA dehydrogenase activity (GO:0003857),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: coenzyme binding (GO:0050662);InterPro=Crotonase%2C core (IPR001753),3-hydroxyacyl-CoA dehydrogenase%2C C-terminal (IPR006108),3-hydroxyacyl-CoA dehydrogenase%2C NAD binding (IPR006176),3-hydroxyacyl-CoA dehydrogenase%2C conserved site (IPR006180),6-phosphogluconate dehydrogenase%2C C-terminal-like (IPR008927),Dehydrogenase%2C multihelical (IPR013328),NAD(P)-binding domain (IPR016040),Enoyl-CoA hydratase/isomerase%2C conserved site (IPR018376);NIAS_FLcDNA=J023090D07;Expression=AK100444;TENOR=Os01t0348600-01;KEGG=Os01t0348600-01 (EC:1.1.1.211%2C EC:1.1.1.35%2C EC:4.2.1.17)
Chr01	irgsp1_rep	five_prime_UTR	13887272	13887484	.	+	.	Parent=Os01t0348600-01
Chr01	irgsp1_rep	CDS	13887485	13887593	.	+	0	Parent=Os01t0348600-01
Chr01	irgsp1_rep	CDS	13888527	13888598	.	+	2	Parent=Os01t0348600-01
Chr01	irgsp1_rep	CDS	13888724	13888789	.	+	2	Parent=Os01t0348600-01
Chr01	irgsp1_rep	CDS	13888888	13888944	.	+	2	Parent=Os01t0348600-01
Chr01	irgsp1_rep	CDS	13889038	13889105	.	+	2	Parent=Os01t0348600-01
Chr01	irgsp1_rep	CDS	13889189	13889270	.	+	0	Parent=Os01t0348600-01
Chr01	irgsp1_rep	CDS	13889566	13889621	.	+	2	Parent=Os01t0348600-01
Chr01	irgsp1_rep	CDS	13889766	13890068	.	+	0	Parent=Os01t0348600-01
Chr01	irgsp1_rep	CDS	13890163	13890249	.	+	0	Parent=Os01t0348600-01
Chr01	irgsp1_rep	CDS	13890320	13890494	.	+	0	Parent=Os01t0348600-01
Chr01	irgsp1_rep	CDS	13890602	13890723	.	+	2	Parent=Os01t0348600-01
Chr01	irgsp1_rep	CDS	13890810	13890973	.	+	0	Parent=Os01t0348600-01
Chr01	irgsp1_rep	CDS	13891046	13891300	.	+	1	Parent=Os01t0348600-01
Chr01	irgsp1_rep	CDS	13891433	13891554	.	+	1	Parent=Os01t0348600-01
Chr01	irgsp1_rep	CDS	13891663	13891784	.	+	2	Parent=Os01t0348600-01
Chr01	irgsp1_rep	CDS	13892232	13892380	.	+	0	Parent=Os01t0348600-01
Chr01	irgsp1_rep	CDS	13892467	13892605	.	+	1	Parent=Os01t0348600-01
Chr01	irgsp1_rep	CDS	13892836	13892871	.	+	0	Parent=Os01t0348600-01
Chr01	irgsp1_rep	three_prime_UTR	13892872	13893148	.	+	.	Parent=Os01t0348600-01
Chr01	irgsp1_rep	mRNA	13890929	13893151	.	+	.	ID=Os01t0348600-02;Name=Os01t0348600-02;Locus_id=Os01g0348600;Note=Similar to glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a.;Transcript_evidence=AK062168 (DDBJ%2C Best hit);ORF_evidence=NP_001152306.1 (RefSeq);GO=Biological Process: fatty acid metabolic process (GO:0006631),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: 3-hydroxyacyl-CoA dehydrogenase activity (GO:0003857),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: coenzyme binding (GO:0050662);InterPro=3-hydroxyacyl-CoA dehydrogenase%2C C-terminal (IPR006108),3-hydroxyacyl-CoA dehydrogenase%2C NAD binding (IPR006176),3-hydroxyacyl-CoA dehydrogenase%2C conserved site (IPR006180),6-phosphogluconate dehydrogenase%2C C-terminal-like (IPR008927),Dehydrogenase%2C multihelical (IPR013328),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-046-B11;Expression=AK062168;TENOR=Os01t0348600-02;KEGG=Os01t0348600-02 (EC:1.1.1.211%2C EC:1.1.1.35%2C EC:4.2.1.17)
Chr01	irgsp1_rep	five_prime_UTR	13890929	13890929	.	+	.	Parent=Os01t0348600-02
Chr01	irgsp1_rep	CDS	13890930	13890973	.	+	0	Parent=Os01t0348600-02
Chr01	irgsp1_rep	CDS	13891046	13891300	.	+	1	Parent=Os01t0348600-02
Chr01	irgsp1_rep	CDS	13891433	13891554	.	+	1	Parent=Os01t0348600-02
Chr01	irgsp1_rep	CDS	13891663	13891784	.	+	2	Parent=Os01t0348600-02
Chr01	irgsp1_rep	CDS	13892232	13892380	.	+	0	Parent=Os01t0348600-02
Chr01	irgsp1_rep	CDS	13892467	13892605	.	+	1	Parent=Os01t0348600-02
Chr01	irgsp1_rep	CDS	13892836	13892871	.	+	0	Parent=Os01t0348600-02
Chr01	irgsp1_rep	three_prime_UTR	13892872	13893151	.	+	.	Parent=Os01t0348600-02
Chr01	irgsp1_rep	mRNA	13891243	13893184	.	+	.	ID=Os01t0348600-03;Name=Os01t0348600-03;Locus_id=Os01g0348600;Note=Similar to glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a.;Transcript_evidence=AK099063 (DDBJ%2C Best hit);ORF_evidence=NP_001152306.1 (RefSeq);GO=Biological Process: fatty acid metabolic process (GO:0006631),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: 3-hydroxyacyl-CoA dehydrogenase activity (GO:0003857),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: coenzyme binding (GO:0050662);InterPro=3-hydroxyacyl-CoA dehydrogenase%2C C-terminal (IPR006108),6-phosphogluconate dehydrogenase%2C C-terminal-like (IPR008927),Dehydrogenase%2C multihelical (IPR013328);NIAS_FLcDNA=J013157A11;Expression=AK099063;TENOR=Os01t0348600-03;KEGG=Os01t0348600-03 (EC:1.1.1.211%2C EC:1.1.1.35%2C EC:4.2.1.17)
Chr01	irgsp1_rep	five_prime_UTR	13891243	13891244	.	+	.	Parent=Os01t0348600-03
Chr01	irgsp1_rep	CDS	13891245	13891300	.	+	0	Parent=Os01t0348600-03
Chr01	irgsp1_rep	CDS	13891433	13891554	.	+	1	Parent=Os01t0348600-03
Chr01	irgsp1_rep	CDS	13891663	13891784	.	+	2	Parent=Os01t0348600-03
Chr01	irgsp1_rep	CDS	13892232	13892380	.	+	0	Parent=Os01t0348600-03
Chr01	irgsp1_rep	CDS	13892467	13892605	.	+	1	Parent=Os01t0348600-03
Chr01	irgsp1_rep	CDS	13892836	13892871	.	+	0	Parent=Os01t0348600-03
Chr01	irgsp1_rep	three_prime_UTR	13892872	13893184	.	+	.	Parent=Os01t0348600-03
Chr01	irgsp1_rep	mRNA	13896299	13898120	.	+	.	ID=Os01t0348700-01;Name=Os01t0348700-01;Locus_id=Os01g0348700;CGSNL Gene Symbol=RPL23A;CGSNL Gene Name=RIBOSOMAL PROTEIN L23A;Oryzabase Gene Symbol Synonym(s)=OsRPL23A;Oryzabase Gene Name Synonym(s)=ribosomal protein L23A%2C ribosomal protein large subunit 23A;Note=Similar to 60S ribosomal protein L23a (L25).;Transcript_evidence=AK120842 (DDBJ%2C Best hit);ORF_evidence=Q01I92 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L23/L25%2C conserved site (IPR001014),Ribosomal protein L23/L25%2C N-terminal (IPR005633),Nucleotide-binding%2C alpha-beta plait (IPR012677),Ribosomal protein L23/L15e (IPR012678),Ribosomal protein L25/L23 (IPR013025),Ribosomal protein L23 (IPR019985);NIAS_FLcDNA=J023022J07;Oryzabase=22167;Expression=AK120842;TENOR=Os01t0348700-01;KEGG=Os01t0348700-01
Chr01	irgsp1_rep	five_prime_UTR	13896299	13896379	.	+	.	Parent=Os01t0348700-01
Chr01	irgsp1_rep	CDS	13896380	13896391	.	+	0	Parent=Os01t0348700-01
Chr01	irgsp1_rep	CDS	13897443	13897804	.	+	0	Parent=Os01t0348700-01
Chr01	irgsp1_rep	CDS	13897892	13897976	.	+	1	Parent=Os01t0348700-01
Chr01	irgsp1_rep	three_prime_UTR	13897977	13898120	.	+	.	Parent=Os01t0348700-01
Chr01	irgsp1_rep	mRNA	13899523	13900729	.	-	.	ID=Os01t0348800-01;Name=Os01t0348800-01;Locus_id=Os01g0348800;Note=Similar to Salt-stress induced protein (Salt protein).;Transcript_evidence=AK062553 (DDBJ%2C Best hit);ORF_evidence=Q0JMY8 (UniProt);InterPro=Mannose-binding lectin (IPR001229);NIAS_FLcDNA=001-104-H05;Expression=AK062553;TENOR=Os01t0348800-01;KEGG=Os01t0348800-01
Chr01	irgsp1_rep	five_prime_UTR	13900728	13900729	.	-	.	Parent=Os01t0348800-01
Chr01	irgsp1_rep	CDS	13900662	13900727	.	-	0	Parent=Os01t0348800-01
Chr01	irgsp1_rep	CDS	13899822	13900058	.	-	0	Parent=Os01t0348800-01
Chr01	irgsp1_rep	three_prime_UTR	13899523	13899821	.	-	.	Parent=Os01t0348800-01
Chr01	irgsp1_rep	mRNA	13903285	13904626	.	-	.	ID=Os01t0348900-01;Name=Os01t0348900-01;Locus_id=Os01g0348900;RAP-DB Gene Symbol Synonym(s)=OsJRL%2C OsMBL1;RAP-DB Gene Name Synonym(s)=jacalin-related mannose-binding lectin%2C Mannose-Binding Lectin 1;CGSNL Gene Symbol=SALT;CGSNL Gene Name=SALT PROTEIN;Oryzabase Gene Symbol Synonym(s)=salT*(sal1)%2C SalT1*%2C sal1%2C Sal1%2C SALT%2C ML%2C SalT%2C OsSalT%2C OsJRL%2C JRL%2C Osl43%2C OsL43%2C OsMBL1%2C MBL1;Oryzabase Gene Name Synonym(s)=salt tolerance%2C Salt tolerance-1%2C Salt stress-induced protein%2C Salt protein%2C Protein lectin-like%2C Protein mannose-binding lectin%2C 15 kda organ-specific salt-induced protein%2C Orysata%2C jacalin-related mannose-binding lectin%2C Mannose-Binding Lectin 1;Note=Jacalin-related mannose-binding lectin%2C Salinity tolerance%2C Resistance to M. oryzae;Transcript_evidence=AK062520,AK105034;ORF_evidence=Q0JMY8;GO=Molecular Function: carbohydrate binding (GO:0030246);InterPro=Jacalin-like lectin domain superfamily (IPR036404),Jacalin-like lectin domain (IPR001229),Jacalin-like lectin domain%2C plant (IPR033734);NIAS_FLcDNA=001-104-D03,001-031-D12;Manual Curation=April 8%2C 2019;Literature_PMID=30696749,27718311,11432928;Oryzabase=451;Expression=AK062520;TENOR=Os01t0348900-01;KEGG=Os01t0348900-01;Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737)
Chr01	irgsp1_rep	five_prime_UTR	13904574	13904626	.	-	.	Parent=Os01t0348900-01
Chr01	irgsp1_rep	five_prime_UTR	13904010	13904012	.	-	.	Parent=Os01t0348900-01
Chr01	irgsp1_rep	CDS	13903812	13904009	.	-	0	Parent=Os01t0348900-01
Chr01	irgsp1_rep	CDS	13903475	13903714	.	-	0	Parent=Os01t0348900-01
Chr01	irgsp1_rep	three_prime_UTR	13903285	13903474	.	-	.	Parent=Os01t0348900-01
Chr01	irgsp1_rep	mRNA	13911234	13912822	.	-	.	ID=Os01t0349000-01;Name=Os01t0349000-01;Locus_id=Os01g0349000;Note=Conserved hypothetical protein.;Transcript_evidence=AK108540 (DDBJ%2C Best hit);ORF_evidence=Q5Z5C8 (UniProt);NIAS_FLcDNA=002-144-D01;TENOR=Os01t0349000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	13911423	13912822	.	-	.	Parent=Os01t0349000-01
Chr01	irgsp1_rep	CDS	13911246	13911422	.	-	0	Parent=Os01t0349000-01
Chr01	irgsp1_rep	three_prime_UTR	13911234	13911245	.	-	.	Parent=Os01t0349000-01
Chr01	irgsp1_rep	mRNA	13922501	13927453	.	-	.	ID=Os01t0349400-01;Name=Os01t0349400-01;Locus_id=Os01g0349400;Oryzabase Gene Symbol Synonym(s)=OsPP5;Oryzabase Gene Name Synonym(s)=Protein phosphatase 5;Note=Similar to Serine/threonine protein phosphatase PP1 (EC 3.1.3.16) (Fragment).;Transcript_evidence=AK122182 (DDBJ%2C Best hit),AK064941 (DDBJ%2C Best hit),AK100195 (DDBJ%2C Best hit),AK105047 (DDBJ%2C Best hit);ORF_evidence=C5XJW2 (UniProt);NIAS_FLcDNA=J033149M05,J013000P08,J023037D01,001-040-E11;Oryzabase=18626;TENOR=Os01t0349400-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	13927330	13927453	.	-	.	Parent=Os01t0349400-01
Chr01	irgsp1_rep	CDS	13927128	13927329	.	-	0	Parent=Os01t0349400-01
Chr01	irgsp1_rep	CDS	13924081	13924640	.	-	2	Parent=Os01t0349400-01
Chr01	irgsp1_rep	CDS	13923815	13924006	.	-	0	Parent=Os01t0349400-01
Chr01	irgsp1_rep	CDS	13922929	13922952	.	-	0	Parent=Os01t0349400-01
Chr01	irgsp1_rep	three_prime_UTR	13922501	13922928	.	-	.	Parent=Os01t0349400-01
Chr01	irgsp1_rep	mRNA	13934496	13935854	.	+	.	ID=Os01t0349600-01;Name=Os01t0349600-01;Locus_id=Os01g0349600;Note=Hypothetical protein.;Transcript_evidence=AK066217 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013054I23;TENOR=Os01t0349600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	13934496	13934862	.	+	.	Parent=Os01t0349600-01
Chr01	irgsp1_rep	CDS	13934863	13935081	.	+	0	Parent=Os01t0349600-01
Chr01	irgsp1_rep	three_prime_UTR	13935082	13935854	.	+	.	Parent=Os01t0349600-01
Chr01	irgsp1_rep	mRNA	13941318	13944605	.	+	.	ID=Os01t0349800-01;Name=Os01t0349800-01;Locus_id=Os01g0349800;Note=Similar to CytoChrome P450.;Transcript_evidence=AK069610 (DDBJ%2C Best hit);ORF_evidence=Q6T485 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J023019H16;Expression=AK069610;TENOR=Os01t0349800-01;KEGG=Os01t0349800-01
Chr01	irgsp1_rep	five_prime_UTR	13941318	13941351	.	+	.	Parent=Os01t0349800-01
Chr01	irgsp1_rep	CDS	13941352	13941631	.	+	0	Parent=Os01t0349800-01
Chr01	irgsp1_rep	CDS	13941791	13942014	.	+	2	Parent=Os01t0349800-01
Chr01	irgsp1_rep	CDS	13942603	13942856	.	+	0	Parent=Os01t0349800-01
Chr01	irgsp1_rep	CDS	13943162	13943543	.	+	1	Parent=Os01t0349800-01
Chr01	irgsp1_rep	CDS	13944059	13944490	.	+	0	Parent=Os01t0349800-01
Chr01	irgsp1_rep	three_prime_UTR	13944491	13944605	.	+	.	Parent=Os01t0349800-01
Chr01	irgsp1_rep	mRNA	13957514	13959224	.	+	.	ID=Os01t0350000-01;Name=Os01t0350000-01;Locus_id=Os01g0350000;Note=Transferase family protein.;Transcript_evidence=AK071594 (DDBJ%2C Best hit);ORF_evidence=NP_001148135.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J023102H06;Expression=AK071594;TENOR=Os01t0350000-01;KEGG=Os01t0350000-01
Chr01	irgsp1_rep	five_prime_UTR	13957514	13957539	.	+	.	Parent=Os01t0350000-01
Chr01	irgsp1_rep	CDS	13957540	13958907	.	+	0	Parent=Os01t0350000-01
Chr01	irgsp1_rep	three_prime_UTR	13958908	13959224	.	+	.	Parent=Os01t0350000-01
Chr01	irgsp1_rep	mRNA	13978048	13979525	.	-	.	ID=Os01t0350100-00;Name=Os01t0350100-00;Locus_id=Os01g0350100;Note=Hypothetical protein.;Transcript_evidence=AK357549 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0350100-00
Chr01	irgsp1_rep	five_prime_UTR	13979457	13979525	.	-	.	Parent=Os01t0350100-00
Chr01	irgsp1_rep	CDS	13978986	13979456	.	-	0	Parent=Os01t0350100-00
Chr01	irgsp1_rep	three_prime_UTR	13978048	13978985	.	-	.	Parent=Os01t0350100-00
Chr01	irgsp1_rep	mRNA	13980666	13983744	.	-	.	ID=Os01t0350300-00;Name=Os01t0350300-00;Locus_id=Os01g0350300;Note=Disease resistance protein domain containing protein.;Transcript_evidence=tplb0029l15 (Wheat FLcDNA);ORF_evidence=B8A7Y4 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os01t0350300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	13982984	13983744	.	-	0	Parent=Os01t0350300-00
Chr01	irgsp1_rep	CDS	13981373	13981871	.	-	1	Parent=Os01t0350300-00
Chr01	irgsp1_rep	three_prime_UTR	13980666	13981372	.	-	.	Parent=Os01t0350300-00
Chr01	irgsp1_rep	mRNA	13986495	13988740	.	-	.	ID=Os01t0350500-01;Name=Os01t0350500-01;Locus_id=Os01g0350500;Oryzabase Gene Name Synonym(s)=Conserved hypothetical protein;Note=Similar to H0124B04.7 protein.;Transcript_evidence=AK241740 (DDBJ%2C Best hit);ORF_evidence=Q259C7 (UniProt);NIAS_FLcDNA=J065201K13;Oryzabase=22035;TENOR=Os01t0350500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	13988573	13988740	.	-	.	Parent=Os01t0350500-01
Chr01	irgsp1_rep	five_prime_UTR	13987143	13988472	.	-	.	Parent=Os01t0350500-01
Chr01	irgsp1_rep	CDS	13986738	13987142	.	-	0	Parent=Os01t0350500-01
Chr01	irgsp1_rep	three_prime_UTR	13986495	13986737	.	-	.	Parent=Os01t0350500-01
Chr01	irgsp1_rep	mRNA	14012517	14019436	.	+	.	ID=Os01t0350900-01;Name=Os01t0350900-01;Locus_id=Os01g0350900;Oryzabase Gene Symbol Synonym(s)=VIP2%2C IPI1;Oryzabase Gene Name Synonym(s)=Putative VIP2 protein%2C IPA1 INTERACTING PROTEIN1%2C IPA1 INTERACTING PROTEIN 1;Note=Similar to VIP2 protein.;Transcript_evidence=AK070217 (DDBJ%2C Best hit);ORF_evidence=Q9M4C5 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J023044E12;Oryzabase=15613;TENOR=Os01t0350900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	14012517	14012730	.	+	.	Parent=Os01t0350900-01
Chr01	irgsp1_rep	CDS	14012731	14012965	.	+	0	Parent=Os01t0350900-01
Chr01	irgsp1_rep	CDS	14016605	14016792	.	+	2	Parent=Os01t0350900-01
Chr01	irgsp1_rep	CDS	14017232	14017290	.	+	0	Parent=Os01t0350900-01
Chr01	irgsp1_rep	CDS	14017739	14017767	.	+	1	Parent=Os01t0350900-01
Chr01	irgsp1_rep	CDS	14017863	14018263	.	+	2	Parent=Os01t0350900-01
Chr01	irgsp1_rep	three_prime_UTR	14018264	14019436	.	+	.	Parent=Os01t0350900-01
Chr01	irgsp1_rep	mRNA	14012515	14019465	.	+	.	ID=Os01t0350900-02;Name=Os01t0350900-02;Locus_id=Os01g0350900;RAP-DB Gene Symbol Synonym(s)=IPI1;RAP-DB Gene Name Synonym(s)=IPA1 INTERACTING PROTEIN1;Oryzabase Gene Symbol Synonym(s)=VIP2%2C IPI1;Oryzabase Gene Name Synonym(s)=Putative VIP2 protein%2C IPA1 INTERACTING PROTEIN1%2C IPA1 INTERACTING PROTEIN 1;Note=RING-finger E3 ligase%2C Regulation of plant architecture;Transcript_evidence=Inferred from literature;ORF_evidence=Q5Z8R1;InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841);NIAS_FLcDNA=001-020-E07 (truncated);Manual Curation=May 23%2C 2017;Literature_PMID=28298520;Oryzabase=15613;Expression=AK058986;TENOR=Os01t0350900-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	14012515	14012730	.	+	.	Parent=Os01t0350900-02
Chr01	irgsp1_rep	CDS	14012731	14012965	.	+	0	Parent=Os01t0350900-02
Chr01	irgsp1_rep	CDS	14016605	14016792	.	+	2	Parent=Os01t0350900-02
Chr01	irgsp1_rep	CDS	14017232	14017290	.	+	0	Parent=Os01t0350900-02
Chr01	irgsp1_rep	CDS	14017739	14017767	.	+	1	Parent=Os01t0350900-02
Chr01	irgsp1_rep	CDS	14017863	14018259	.	+	2	Parent=Os01t0350900-02
Chr01	irgsp1_rep	CDS	14018690	14019149	.	+	1	Parent=Os01t0350900-02
Chr01	irgsp1_rep	three_prime_UTR	14019150	14019465	.	+	.	Parent=Os01t0350900-02
Chr01	irgsp1_rep	mRNA	14036461	14040808	.	+	.	ID=Os01t0351100-00;Name=Os01t0351100-00;Locus_id=Os01g0351100;Oryzabase Gene Symbol Synonym(s)=PARP2B;Oryzabase Gene Name Synonym(s)=poly(ADP-ribose) polymerase 2B;Note=Similar to Poly.;Transcript_evidence=BT034831 (DDBJ);ORF_evidence=Q0JMY1 (UniProt);GO=Biological Process: protein ADP-ribosylation (GO:0006471),Molecular Function: NAD+ ADP-ribosyltransferase activity (GO:0003950);InterPro=Poly(ADP-ribose) polymerase%2C regulatory domain (IPR004102),Poly(ADP-ribose) polymerase%2C catalytic domain (IPR012317);Oryzabase=21318;TENOR=Os01t0351100-00;KEGG=Os01t0351100-00 (EC:2.4.2.30)
Chr01	irgsp1_rep	five_prime_UTR	14036461	14036462	.	+	.	Parent=Os01t0351100-00
Chr01	irgsp1_rep	CDS	14036463	14036583	.	+	0	Parent=Os01t0351100-00
Chr01	irgsp1_rep	CDS	14036994	14037049	.	+	2	Parent=Os01t0351100-00
Chr01	irgsp1_rep	CDS	14037314	14037393	.	+	0	Parent=Os01t0351100-00
Chr01	irgsp1_rep	CDS	14037895	14037941	.	+	1	Parent=Os01t0351100-00
Chr01	irgsp1_rep	CDS	14038061	14038110	.	+	2	Parent=Os01t0351100-00
Chr01	irgsp1_rep	CDS	14038425	14038487	.	+	0	Parent=Os01t0351100-00
Chr01	irgsp1_rep	CDS	14038636	14038716	.	+	0	Parent=Os01t0351100-00
Chr01	irgsp1_rep	CDS	14038996	14039106	.	+	0	Parent=Os01t0351100-00
Chr01	irgsp1_rep	CDS	14039193	14039268	.	+	0	Parent=Os01t0351100-00
Chr01	irgsp1_rep	CDS	14039471	14039613	.	+	2	Parent=Os01t0351100-00
Chr01	irgsp1_rep	CDS	14039842	14039915	.	+	0	Parent=Os01t0351100-00
Chr01	irgsp1_rep	CDS	14040485	14040590	.	+	1	Parent=Os01t0351100-00
Chr01	irgsp1_rep	CDS	14040710	14040808	.	+	0	Parent=Os01t0351100-00
Chr01	irgsp1_rep	mRNA	14047844	14054909	.	+	.	ID=Os01t0351200-00;Name=Os01t0351200-00;Locus_id=Os01g0351200;Oryzabase Gene Symbol Synonym(s)=PARP2A;Oryzabase Gene Name Synonym(s)=poly(ADP-ribose) polymerase 2A;Note=Similar to Poly.;Transcript_evidence=AJ222588 (DDBJ);ORF_evidence=Q5Z8Q9 (UniProt);GO=Biological Process: protein ADP-ribosylation (GO:0006471),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: NAD+ ADP-ribosyltransferase activity (GO:0003950);InterPro=DNA-binding SAP (IPR003034),Poly(ADP-ribose) polymerase%2C regulatory domain (IPR004102),WGR domain (IPR008893),Poly(ADP-ribose) polymerase%2C catalytic domain (IPR012317);Oryzabase=21317;TENOR=Os01t0351200-00;KEGG=Os01t0351200-00 (EC:2.4.2.30)
Chr01	irgsp1_rep	five_prime_UTR	14047844	14047941	.	+	.	Parent=Os01t0351200-00
Chr01	irgsp1_rep	CDS	14047942	14048025	.	+	0	Parent=Os01t0351200-00
Chr01	irgsp1_rep	CDS	14048150	14048486	.	+	0	Parent=Os01t0351200-00
Chr01	irgsp1_rep	CDS	14048596	14048720	.	+	2	Parent=Os01t0351200-00
Chr01	irgsp1_rep	CDS	14049063	14049144	.	+	0	Parent=Os01t0351200-00
Chr01	irgsp1_rep	CDS	14049580	14049812	.	+	2	Parent=Os01t0351200-00
Chr01	irgsp1_rep	CDS	14049892	14050006	.	+	0	Parent=Os01t0351200-00
Chr01	irgsp1_rep	CDS	14050440	14050495	.	+	2	Parent=Os01t0351200-00
Chr01	irgsp1_rep	CDS	14050751	14050824	.	+	0	Parent=Os01t0351200-00
Chr01	irgsp1_rep	CDS	14051314	14051360	.	+	1	Parent=Os01t0351200-00
Chr01	irgsp1_rep	CDS	14051579	14051628	.	+	2	Parent=Os01t0351200-00
Chr01	irgsp1_rep	CDS	14051981	14052043	.	+	0	Parent=Os01t0351200-00
Chr01	irgsp1_rep	CDS	14052281	14052361	.	+	0	Parent=Os01t0351200-00
Chr01	irgsp1_rep	CDS	14052638	14052748	.	+	0	Parent=Os01t0351200-00
Chr01	irgsp1_rep	CDS	14052835	14052910	.	+	0	Parent=Os01t0351200-00
Chr01	irgsp1_rep	CDS	14053337	14053479	.	+	2	Parent=Os01t0351200-00
Chr01	irgsp1_rep	CDS	14053896	14053969	.	+	0	Parent=Os01t0351200-00
Chr01	irgsp1_rep	CDS	14054425	14054530	.	+	1	Parent=Os01t0351200-00
Chr01	irgsp1_rep	CDS	14054613	14054708	.	+	0	Parent=Os01t0351200-00
Chr01	irgsp1_rep	three_prime_UTR	14054709	14054909	.	+	.	Parent=Os01t0351200-00
Chr01	irgsp1_rep	mRNA	14059603	14064199	.	+	.	ID=Os01t0351300-01;Name=Os01t0351300-01;Locus_id=Os01g0351300;Note=Exocyst complex subunit Sec15-like family protein.;Transcript_evidence=AK102963 (DDBJ%2C Best hit);ORF_evidence=NP_001151736.1 (RefSeq);GO=Biological Process: vesicle docking involved in exocytosis (GO:0006904),Cellular Component: exocyst (GO:0000145);InterPro=Exocyst complex subunit Sec15-like (IPR007225);NIAS_FLcDNA=J033115I11;Expression=AK102963;TENOR=Os01t0351300-01;KEGG=Os01t0351300-01
Chr01	irgsp1_rep	five_prime_UTR	14059603	14059668	.	+	.	Parent=Os01t0351300-01
Chr01	irgsp1_rep	CDS	14059669	14062071	.	+	0	Parent=Os01t0351300-01
Chr01	irgsp1_rep	three_prime_UTR	14062072	14062094	.	+	.	Parent=Os01t0351300-01
Chr01	irgsp1_rep	three_prime_UTR	14063653	14064199	.	+	.	Parent=Os01t0351300-01
Chr01	irgsp1_rep	mRNA	14068832	14069563	.	-	.	ID=Os01t0351500-00;Name=Os01t0351500-00;Locus_id=Os01g0351500;Note=Plant disease resistance response protein domain containing protein.;Transcript_evidence=AY421731 (DDBJ);ORF_evidence=Q8S211 (UniProt);InterPro=Plant disease resistance response protein (IPR004265);TENOR=Os01t0351500-00
Chr01	irgsp1_rep	five_prime_UTR	14069505	14069563	.	-	.	Parent=Os01t0351500-00
Chr01	irgsp1_rep	CDS	14069248	14069504	.	-	0	Parent=Os01t0351500-00
Chr01	irgsp1_rep	CDS	14068832	14069033	.	-	1	Parent=Os01t0351500-00
Chr01	irgsp1_rep	mRNA	14077661	14080700	.	+	.	ID=Os01t0351800-01;Name=Os01t0351800-01;Locus_id=Os01g0351800;CGSNL Gene Symbol=2ODD16;CGSNL Gene Name=2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 16;Oryzabase Gene Symbol Synonym(s)=2-ODD16%2C Os2-ODD16%2C Os2ODD16;Oryzabase Gene Name Synonym(s)=2-oxoglutarate-dependent dioxygenase 16;Note=2OG-Fe(II) oxygenase domain containing protein.;Transcript_evidence=AK073503 (DDBJ%2C Best hit);ORF_evidence=NP_001149052.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=J033046K19;Oryzabase=22620;Expression=AK073503;TENOR=Os01t0351800-01;KEGG=Os01t0351800-01
Chr01	irgsp1_rep	five_prime_UTR	14077661	14077848	.	+	.	Parent=Os01t0351800-01
Chr01	irgsp1_rep	five_prime_UTR	14078928	14078970	.	+	.	Parent=Os01t0351800-01
Chr01	irgsp1_rep	CDS	14078971	14079183	.	+	0	Parent=Os01t0351800-01
Chr01	irgsp1_rep	CDS	14079277	14079524	.	+	0	Parent=Os01t0351800-01
Chr01	irgsp1_rep	CDS	14079605	14079932	.	+	1	Parent=Os01t0351800-01
Chr01	irgsp1_rep	CDS	14080051	14080296	.	+	0	Parent=Os01t0351800-01
Chr01	irgsp1_rep	three_prime_UTR	14080297	14080700	.	+	.	Parent=Os01t0351800-01
Chr01	irgsp1_rep	mRNA	14101994	14108083	.	+	.	ID=Os01t0352100-01;Name=Os01t0352100-01;Locus_id=Os01g0352100;CGSNL Gene Symbol=2ODD18;CGSNL Gene Name=2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 18;Oryzabase Gene Symbol Synonym(s)=2-ODD18%2C Os2-ODD18%2C Os2ODD18;Oryzabase Gene Name Synonym(s)=2-oxoglutarate-dependent dioxygenase 18;Note=2OG-Fe(II) oxygenase domain containing protein.;Transcript_evidence=AK072222 (DDBJ%2C Best hit);ORF_evidence=NP_001149052.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=J013165K20;Oryzabase=22622;Expression=AK072222;TENOR=Os01t0352100-01;KEGG=Os01t0352100-01
Chr01	irgsp1_rep	five_prime_UTR	14101994	14102040	.	+	.	Parent=Os01t0352100-01
Chr01	irgsp1_rep	CDS	14102041	14102262	.	+	0	Parent=Os01t0352100-01
Chr01	irgsp1_rep	CDS	14102515	14102762	.	+	0	Parent=Os01t0352100-01
Chr01	irgsp1_rep	CDS	14103258	14103582	.	+	1	Parent=Os01t0352100-01
Chr01	irgsp1_rep	CDS	14107522	14107779	.	+	0	Parent=Os01t0352100-01
Chr01	irgsp1_rep	three_prime_UTR	14107780	14108083	.	+	.	Parent=Os01t0352100-01
Chr01	irgsp1_rep	mRNA	14102045	14102764	.	-	.	ID=Os01t0352200-00;Name=Os01t0352200-00;Locus_id=Os01g0352200;Note=Hypothetical protein.;Transcript_evidence=EU955974 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0352200-00
Chr01	irgsp1_rep	five_prime_UTR	14102568	14102764	.	-	.	Parent=Os01t0352200-00
Chr01	irgsp1_rep	CDS	14102527	14102567	.	-	0	Parent=Os01t0352200-00
Chr01	irgsp1_rep	CDS	14102045	14102277	.	-	1	Parent=Os01t0352200-00
Chr01	irgsp1_rep	mRNA	14144925	14145049	.	+	.	ID=Os01t0352751-00;Name=Os01t0352751-00;Locus_id=Os01g0352751;Note=Non-protein coding transcript.;Transcript_evidence=DQ840407 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0352751-00
Chr01	irgsp1_rep	exon	14144925	14145049	.	+	.	Parent=Os01t0352751-00
Chr01	irgsp1_rep	mRNA	14167662	14168570	.	+	.	ID=Os01t0353400-01;Name=Os01t0353400-01;Locus_id=Os01g0353400;RAP-DB Gene Symbol Synonym(s)=OsGST4;RAP-DB Gene Name Synonym(s)=glutathione S-transferase 4;CGSNL Gene Symbol=GSTF11;CGSNL Gene Name=PHI GLUTATHIONE S-TRANSFERASE 11;Oryzabase Gene Symbol Synonym(s)=OsGSTF11%2C OsGST4;Note=Glutathione S-transferase%2C Tolerance to salinity and oxidative stress%2C ROS-scavenging activity;Transcript_evidence=BT068902 (maize);ORF_evidence=Q0JMX6;GO=Molecular Function: protein binding (GO:0005515);InterPro=Thioredoxin-like superfamily (IPR036249),Glutathione S-transferase%2C C-terminal domain superfamily (IPR036282),Glutathione Transferase family (IPR040079),Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal-like (IPR010987),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferases Phi%2C C-terminal (IPR034347);Manual Curation=July 22%2C 2020;Literature_PMID=30303953;Oryzabase=9513;TENOR=Os01t0353400-00;KEGG=Os01t0353400-00 (EC:2.5.1.18)
Chr01	irgsp1_rep	CDS	14167662	14167760	.	+	0	Parent=Os01t0353400-01
Chr01	irgsp1_rep	CDS	14167894	14167942	.	+	0	Parent=Os01t0353400-01
Chr01	irgsp1_rep	CDS	14168032	14168537	.	+	2	Parent=Os01t0353400-01
Chr01	irgsp1_rep	three_prime_UTR	14168538	14168570	.	+	.	Parent=Os01t0353400-01
Chr01	irgsp1_rep	mRNA	14167663	14168485	.	-	.	ID=Os01t0353501-00;Name=Os01t0353501-00;Locus_id=Os01g0353501;Note=Hypothetical protein.;Transcript_evidence=BT009482 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0353501-00
Chr01	irgsp1_rep	five_prime_UTR	14168484	14168485	.	-	.	Parent=Os01t0353501-00
Chr01	irgsp1_rep	CDS	14168040	14168483	.	-	0	Parent=Os01t0353501-00
Chr01	irgsp1_rep	CDS	14167807	14167815	.	-	0	Parent=Os01t0353501-00
Chr01	irgsp1_rep	three_prime_UTR	14167663	14167806	.	-	.	Parent=Os01t0353501-00
Chr01	irgsp1_rep	mRNA	14171226	14175788	.	+	.	ID=Os01t0353600-00;Name=Os01t0353600-00;Locus_id=Os01g0353600;Note=Similar to AP-3 complex subunit sigma-2.;Transcript_evidence=FP095724 (DDBJ);ORF_evidence=B4FA26 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: protein transport (GO:0015031),Molecular Function: protein transporter activity (GO:0008565);InterPro=Longin-like (IPR011012),Adaptor protein complex%2C sigma subunit (IPR016635),AP complex%2C mu/sigma subunit (IPR022775);TENOR=Os01t0353600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	14171226	14171242	.	+	.	Parent=Os01t0353600-00
Chr01	irgsp1_rep	CDS	14171243	14171311	.	+	0	Parent=Os01t0353600-00
Chr01	irgsp1_rep	CDS	14171494	14171536	.	+	0	Parent=Os01t0353600-00
Chr01	irgsp1_rep	CDS	14171612	14171673	.	+	2	Parent=Os01t0353600-00
Chr01	irgsp1_rep	CDS	14172335	14172431	.	+	0	Parent=Os01t0353600-00
Chr01	irgsp1_rep	CDS	14174784	14174854	.	+	2	Parent=Os01t0353600-00
Chr01	irgsp1_rep	CDS	14175283	14175374	.	+	0	Parent=Os01t0353600-00
Chr01	irgsp1_rep	CDS	14175459	14175525	.	+	1	Parent=Os01t0353600-00
Chr01	irgsp1_rep	three_prime_UTR	14175526	14175788	.	+	.	Parent=Os01t0353600-00
Chr01	irgsp1_rep	mRNA	14174019	14174501	.	-	.	ID=Os01t0353633-00;Name=Os01t0353633-00;Locus_id=Os01g0353633;Note=Similar to OSIGBa0157K09-H0214G12.6 protein.;Transcript_evidence=AK109180 (DDBJ%2C Secondary hit);ORF_evidence=Q01HF1 (UniProt);InterPro=DNA-binding pseudobarrel domain (IPR015300);Expression=AK109180;TENOR=Os01t0353633-00;KEGG=Os01t0353633-00
Chr01	irgsp1_rep	five_prime_UTR	14174441	14174501	.	-	.	Parent=Os01t0353633-00
Chr01	irgsp1_rep	CDS	14174024	14174440	.	-	0	Parent=Os01t0353633-00
Chr01	irgsp1_rep	three_prime_UTR	14174019	14174023	.	-	.	Parent=Os01t0353633-00
Chr01	irgsp1_rep	mRNA	14197332	14199513	.	+	.	ID=Os01t0353900-01;Name=Os01t0353900-01;Locus_id=Os01g0353900;Note=Similar to cDNA clone:J023055K12%2C full insert sequence.;Transcript_evidence=AK063501 (DDBJ%2C Best hit);ORF_evidence=B7EI05 (UniProt);NIAS_FLcDNA=001-116-E07;TENOR=Os01t0353900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	14197332	14197997	.	+	.	Parent=Os01t0353900-01
Chr01	irgsp1_rep	five_prime_UTR	14198208	14198581	.	+	.	Parent=Os01t0353900-01
Chr01	irgsp1_rep	five_prime_UTR	14199042	14199167	.	+	.	Parent=Os01t0353900-01
Chr01	irgsp1_rep	CDS	14199168	14199392	.	+	0	Parent=Os01t0353900-01
Chr01	irgsp1_rep	three_prime_UTR	14199393	14199513	.	+	.	Parent=Os01t0353900-01
Chr01	irgsp1_rep	mRNA	14197353	14199153	.	+	.	ID=Os01t0353900-02;Name=Os01t0353900-02;Locus_id=Os01g0353900;Note=Conserved hypothetical protein.;Transcript_evidence=AK105827 (DDBJ%2C Best hit);ORF_evidence=B9EWN2 (UniProt);NIAS_FLcDNA=001-203-E03;TENOR=Os01t0353900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	14197353	14197584	.	+	.	Parent=Os01t0353900-02
Chr01	irgsp1_rep	CDS	14197585	14197941	.	+	0	Parent=Os01t0353900-02
Chr01	irgsp1_rep	three_prime_UTR	14197942	14198581	.	+	.	Parent=Os01t0353900-02
Chr01	irgsp1_rep	three_prime_UTR	14199042	14199153	.	+	.	Parent=Os01t0353900-02
Chr01	irgsp1_rep	mRNA	14224319	14224915	.	+	.	ID=Os01t0354175-00;Name=Os01t0354175-00;Locus_id=Os01g0354175;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os01t0354175-00
Chr01	irgsp1_rep	CDS	14224319	14224915	.	+	0	Parent=Os01t0354175-00
Chr01	irgsp1_rep	mRNA	14224921	14233645	.	-	.	ID=Os01t0354200-01;Name=Os01t0354200-01;Locus_id=Os01g0354200;Note=Similar to Sterol C-14 reductase.;Transcript_evidence=AK112105 (DDBJ%2C Best hit);ORF_evidence=B5QT68 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Ergosterol biosynthesis ERG4/ERG24 (IPR001171);NIAS_FLcDNA=002-110-E10;TENOR=Os01t0354200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	14233535	14233645	.	-	.	Parent=Os01t0354200-01
Chr01	irgsp1_rep	five_prime_UTR	14232034	14232115	.	-	.	Parent=Os01t0354200-01
Chr01	irgsp1_rep	five_prime_UTR	14228743	14228790	.	-	.	Parent=Os01t0354200-01
Chr01	irgsp1_rep	CDS	14228695	14228742	.	-	0	Parent=Os01t0354200-01
Chr01	irgsp1_rep	CDS	14228497	14228614	.	-	0	Parent=Os01t0354200-01
Chr01	irgsp1_rep	CDS	14228324	14228394	.	-	2	Parent=Os01t0354200-01
Chr01	irgsp1_rep	CDS	14228122	14228178	.	-	0	Parent=Os01t0354200-01
Chr01	irgsp1_rep	CDS	14227599	14227690	.	-	0	Parent=Os01t0354200-01
Chr01	irgsp1_rep	CDS	14227309	14227356	.	-	1	Parent=Os01t0354200-01
Chr01	irgsp1_rep	CDS	14226682	14226802	.	-	1	Parent=Os01t0354200-01
Chr01	irgsp1_rep	CDS	14226560	14226606	.	-	0	Parent=Os01t0354200-01
Chr01	irgsp1_rep	CDS	14226325	14226406	.	-	1	Parent=Os01t0354200-01
Chr01	irgsp1_rep	CDS	14226026	14226102	.	-	0	Parent=Os01t0354200-01
Chr01	irgsp1_rep	CDS	14225803	14225922	.	-	1	Parent=Os01t0354200-01
Chr01	irgsp1_rep	CDS	14225253	14225327	.	-	1	Parent=Os01t0354200-01
Chr01	irgsp1_rep	CDS	14225166	14225178	.	-	1	Parent=Os01t0354200-01
Chr01	irgsp1_rep	three_prime_UTR	14224921	14225165	.	-	.	Parent=Os01t0354200-01
Chr01	irgsp1_rep	mRNA	14229224	14230079	.	-	.	ID=Os01t0354450-00;Name=Os01t0354450-00;Locus_id=Os01g0354450;Note=Similar to ATP binding protein.;Transcript_evidence=AK360906 (DDBJ);ORF_evidence=NP_001150338.1 (RefSeq);TENOR=Os01t0354450-00
Chr01	irgsp1_rep	five_prime_UTR	14229917	14230079	.	-	.	Parent=Os01t0354450-00
Chr01	irgsp1_rep	CDS	14229224	14229916	.	-	0	Parent=Os01t0354450-00
Chr01	irgsp1_rep	mRNA	14252929	14256623	.	+	.	ID=Os01t0354700-00;Name=Os01t0354700-00;Locus_id=Os01g0354700;Note=Pre-mRNA cleavage complex II Clp1 domain containing protein.;Transcript_evidence=AK376320 (DDBJ);ORF_evidence=B9EWN4 (UniProt);InterPro=Pre-mRNA cleavage complex II Clp1 (IPR010655);TENOR=Os01t0354700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	14252929	14253110	.	+	0	Parent=Os01t0354700-00
Chr01	irgsp1_rep	CDS	14253659	14253756	.	+	1	Parent=Os01t0354700-00
Chr01	irgsp1_rep	CDS	14254292	14254325	.	+	2	Parent=Os01t0354700-00
Chr01	irgsp1_rep	CDS	14254852	14255021	.	+	1	Parent=Os01t0354700-00
Chr01	irgsp1_rep	CDS	14255181	14255361	.	+	2	Parent=Os01t0354700-00
Chr01	irgsp1_rep	CDS	14255439	14255619	.	+	1	Parent=Os01t0354700-00
Chr01	irgsp1_rep	CDS	14256243	14256354	.	+	0	Parent=Os01t0354700-00
Chr01	irgsp1_rep	CDS	14256481	14256623	.	+	2	Parent=Os01t0354700-00
Chr01	irgsp1_rep	mRNA	14264078	14267208	.	+	.	ID=Os01t0355100-01;Name=Os01t0355100-01;Locus_id=Os01g0355100;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK241009 (DDBJ%2C Best hit);ORF_evidence=NP_001172331.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J065053H11;TENOR=Os01t0355100-01;KEGG=Os01t0355100-01
Chr01	irgsp1_rep	five_prime_UTR	14264078	14264413	.	+	.	Parent=Os01t0355100-01
Chr01	irgsp1_rep	CDS	14264414	14267047	.	+	0	Parent=Os01t0355100-01
Chr01	irgsp1_rep	three_prime_UTR	14267048	14267208	.	+	.	Parent=Os01t0355100-01
Chr01	irgsp1_rep	mRNA	14264762	14267043	.	-	.	ID=Os01t0355175-00;Name=Os01t0355175-00;Locus_id=Os01g0355175;Note=Hypothetical protein.;Transcript_evidence=BT084741 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0355175-00
Chr01	irgsp1_rep	five_prime_UTR	14266327	14267043	.	-	.	Parent=Os01t0355175-00
Chr01	irgsp1_rep	CDS	14266060	14266326	.	-	0	Parent=Os01t0355175-00
Chr01	irgsp1_rep	three_prime_UTR	14265948	14266059	.	-	.	Parent=Os01t0355175-00
Chr01	irgsp1_rep	three_prime_UTR	14264762	14265340	.	-	.	Parent=Os01t0355175-00
Chr01	irgsp1_rep	mRNA	14280966	14282033	.	+	.	ID=Os01t0355250-00;Name=Os01t0355250-00;Locus_id=Os01g0355250;Note=Similar to Salt stress-induced protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2WPN7 (UniProt);InterPro=Mannose-binding lectin (IPR001229);TENOR=Os01t0355250-00;KEGG=Os01t0355250-00
Chr01	irgsp1_rep	CDS	14280966	14281163	.	+	0	Parent=Os01t0355250-00
Chr01	irgsp1_rep	CDS	14281797	14282033	.	+	0	Parent=Os01t0355250-00
Chr01	irgsp1_rep	mRNA	14290376	14290915	.	+	.	ID=Os01t0355400-01;Name=Os01t0355400-01;Locus_id=Os01g0355400;Note=Similar to BPM3%3B protein binding.;Transcript_evidence=AK107903 (DDBJ%2C Best hit),AK064594 (DDBJ%2C Best hit);ORF_evidence=NP_030522.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=MATH (IPR002083),TRAF-like (IPR008974);NIAS_FLcDNA=002-134-F10,002-112-G08;TENOR=Os01t0355400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	14290376	14290430	.	+	.	Parent=Os01t0355400-01
Chr01	irgsp1_rep	CDS	14290431	14290676	.	+	0	Parent=Os01t0355400-01
Chr01	irgsp1_rep	three_prime_UTR	14290677	14290915	.	+	.	Parent=Os01t0355400-01
Chr01	irgsp1_rep	mRNA	14300041	14303191	.	-	.	ID=Os01t0355500-01;Name=Os01t0355500-01;Locus_id=Os01g0355500;Oryzabase Gene Symbol Synonym(s)=OsDjC5;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C5;Note=Hypothetical conserved gene.;Transcript_evidence=AK119920 (DDBJ%2C Best hit);ORF_evidence=B9EWN7 (UniProt);NIAS_FLcDNA=002-183-G06;Oryzabase=12162;Expression=AK119920;TENOR=Os01t0355500-01;KEGG=Os01t0355500-01
Chr01	irgsp1_rep	five_prime_UTR	14303057	14303191	.	-	.	Parent=Os01t0355500-01
Chr01	irgsp1_rep	CDS	14302467	14303056	.	-	0	Parent=Os01t0355500-01
Chr01	irgsp1_rep	CDS	14300041	14301019	.	-	1	Parent=Os01t0355500-01
Chr01	irgsp1_rep	mRNA	14292115	14303170	.	-	.	ID=Os01t0355500-02;Name=Os01t0355500-02;Locus_id=Os01g0355500;Oryzabase Gene Symbol Synonym(s)=OsDjC5;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C5;Note=Heat shock protein DnaJ%2C N-terminal domain containing protein.;Transcript_evidence=AK100317 (DDBJ%2C Best hit);ORF_evidence=B9EWN7 (UniProt);GO=Molecular Function: heat shock protein binding (GO:0031072);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623);NIAS_FLcDNA=J023078P09;Oryzabase=12162;Expression=AK100317;TENOR=Os01t0355500-02;KEGG=Os01t0355500-02
Chr01	irgsp1_rep	five_prime_UTR	14303057	14303170	.	-	.	Parent=Os01t0355500-02
Chr01	irgsp1_rep	CDS	14302467	14303056	.	-	0	Parent=Os01t0355500-02
Chr01	irgsp1_rep	CDS	14299366	14301019	.	-	1	Parent=Os01t0355500-02
Chr01	irgsp1_rep	CDS	14299142	14299274	.	-	0	Parent=Os01t0355500-02
Chr01	irgsp1_rep	CDS	14298958	14299055	.	-	2	Parent=Os01t0355500-02
Chr01	irgsp1_rep	CDS	14298793	14298858	.	-	0	Parent=Os01t0355500-02
Chr01	irgsp1_rep	CDS	14298235	14298324	.	-	0	Parent=Os01t0355500-02
Chr01	irgsp1_rep	CDS	14294222	14294398	.	-	0	Parent=Os01t0355500-02
Chr01	irgsp1_rep	CDS	14292528	14292566	.	-	0	Parent=Os01t0355500-02
Chr01	irgsp1_rep	three_prime_UTR	14292115	14292527	.	-	.	Parent=Os01t0355500-02
Chr01	irgsp1_rep	mRNA	14308159	14316509	.	+	.	ID=Os01t0355600-01;Name=Os01t0355600-01;Locus_id=Os01g0355600;Note=Galactose-binding like domain containing protein.;Transcript_evidence=AK100134 (DDBJ%2C Best hit);ORF_evidence=Q5ZCR4 (UniProt);NIAS_FLcDNA=J023010F03;Expression=AK100134;TENOR=Os01t0355600-01;KEGG=Os01t0355600-01
Chr01	irgsp1_rep	CDS	14308159	14308452	.	+	0	Parent=Os01t0355600-01
Chr01	irgsp1_rep	CDS	14308769	14308876	.	+	0	Parent=Os01t0355600-01
Chr01	irgsp1_rep	CDS	14308976	14309146	.	+	0	Parent=Os01t0355600-01
Chr01	irgsp1_rep	CDS	14309681	14309923	.	+	0	Parent=Os01t0355600-01
Chr01	irgsp1_rep	CDS	14310041	14310505	.	+	0	Parent=Os01t0355600-01
Chr01	irgsp1_rep	CDS	14310981	14311754	.	+	0	Parent=Os01t0355600-01
Chr01	irgsp1_rep	CDS	14312011	14312208	.	+	0	Parent=Os01t0355600-01
Chr01	irgsp1_rep	CDS	14314061	14314495	.	+	0	Parent=Os01t0355600-01
Chr01	irgsp1_rep	CDS	14314576	14314809	.	+	0	Parent=Os01t0355600-01
Chr01	irgsp1_rep	CDS	14315163	14315444	.	+	0	Parent=Os01t0355600-01
Chr01	irgsp1_rep	three_prime_UTR	14315445	14315460	.	+	.	Parent=Os01t0355600-01
Chr01	irgsp1_rep	three_prime_UTR	14316061	14316509	.	+	.	Parent=Os01t0355600-01
Chr01	irgsp1_rep	mRNA	14318283	14319789	.	-	.	ID=Os01t0355700-00;Name=Os01t0355700-00;Locus_id=Os01g0355700;Note=NB-ARC domain containing protein.;Transcript_evidence=FP095626 (DDBJ);ORF_evidence=A2WPS7 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os01t0355700-00
Chr01	irgsp1_rep	five_prime_UTR	14319748	14319789	.	-	.	Parent=Os01t0355700-00
Chr01	irgsp1_rep	CDS	14318827	14319747	.	-	0	Parent=Os01t0355700-00
Chr01	irgsp1_rep	three_prime_UTR	14318666	14318826	.	-	.	Parent=Os01t0355700-00
Chr01	irgsp1_rep	three_prime_UTR	14318283	14318572	.	-	.	Parent=Os01t0355700-00
Chr01	irgsp1_rep	mRNA	14326183	14327100	.	+	.	ID=Os01t0355800-00;Name=Os01t0355800-00;Locus_id=Os01g0355800;Note=Similar to Esterase PIR7A.;Transcript_evidence=AK369763 (DDBJ);ORF_evidence=B6U5B4 (UniProt);TENOR=Os01t0355800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	14326183	14327100	.	+	0	Parent=Os01t0355800-00
Chr01	irgsp1_rep	mRNA	14328827	14333206	.	-	.	ID=Os01t0355900-01;Name=Os01t0355900-01;Locus_id=Os01g0355900;CGSNL Gene Symbol=ELS1;CGSNL Gene Name=ESD4-LIKE SUMO PROTEASE 1;Oryzabase Gene Symbol Synonym(s)=OsELS1;Oryzabase Gene Name Synonym(s)=SUMO protease protein;Note=Peptidase C48%2C SUMO/Sentrin/Ubl1 family protein.;Transcript_evidence=AK120976 (DDBJ%2C Best hit);ORF_evidence=B6U6F6 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase C48%2C SUMO/Sentrin/Ubl1 (IPR003653);NIAS_FLcDNA=J023041L20;Oryzabase=20941;Expression=AK120976;TENOR=Os01t0355900-01;KEGG=Os01t0355900-01 (EC:3.4.22.-)
Chr01	irgsp1_rep	five_prime_UTR	14333162	14333206	.	-	.	Parent=Os01t0355900-01
Chr01	irgsp1_rep	CDS	14332379	14333161	.	-	0	Parent=Os01t0355900-01
Chr01	irgsp1_rep	CDS	14331419	14331489	.	-	0	Parent=Os01t0355900-01
Chr01	irgsp1_rep	CDS	14331231	14331324	.	-	1	Parent=Os01t0355900-01
Chr01	irgsp1_rep	CDS	14331046	14331144	.	-	0	Parent=Os01t0355900-01
Chr01	irgsp1_rep	CDS	14330399	14330485	.	-	0	Parent=Os01t0355900-01
Chr01	irgsp1_rep	CDS	14330194	14330313	.	-	0	Parent=Os01t0355900-01
Chr01	irgsp1_rep	CDS	14329772	14329875	.	-	0	Parent=Os01t0355900-01
Chr01	irgsp1_rep	CDS	14329505	14329577	.	-	1	Parent=Os01t0355900-01
Chr01	irgsp1_rep	CDS	14329318	14329380	.	-	0	Parent=Os01t0355900-01
Chr01	irgsp1_rep	three_prime_UTR	14328827	14329317	.	-	.	Parent=Os01t0355900-01
Chr01	irgsp1_rep	mRNA	14340326	14357449	.	-	.	ID=Os01t0356400-01;Name=Os01t0356400-01;Locus_id=Os01g0356400;CGSNL Gene Symbol=MRP8;CGSNL Gene Name=MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 8;Oryzabase Gene Symbol Synonym(s)=OsABCC8%2C OsMRP8a%2C OsMRP8a%2C OsMRP8;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCC subgroup member 8%2C multidrug resistance-associated protein 8;Note=Similar to multidrug resistance protein ABC transporter family.;Transcript_evidence=AK242094 (DDBJ%2C Best hit);ORF_evidence=NP_182301.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);NIAS_FLcDNA=J075142E09;Oryzabase=11959;TENOR=Os01t0356400-01;KEGG=Os01t0356400-01
Chr01	irgsp1_rep	five_prime_UTR	14357245	14357449	.	-	.	Parent=Os01t0356400-01
Chr01	irgsp1_rep	CDS	14355835	14357244	.	-	0	Parent=Os01t0356400-01
Chr01	irgsp1_rep	CDS	14351256	14351752	.	-	0	Parent=Os01t0356400-01
Chr01	irgsp1_rep	CDS	14350674	14350935	.	-	1	Parent=Os01t0356400-01
Chr01	irgsp1_rep	CDS	14343445	14344473	.	-	0	Parent=Os01t0356400-01
Chr01	irgsp1_rep	CDS	14343086	14343250	.	-	0	Parent=Os01t0356400-01
Chr01	irgsp1_rep	CDS	14342672	14342966	.	-	0	Parent=Os01t0356400-01
Chr01	irgsp1_rep	CDS	14341962	14342176	.	-	2	Parent=Os01t0356400-01
Chr01	irgsp1_rep	CDS	14341470	14341775	.	-	0	Parent=Os01t0356400-01
Chr01	irgsp1_rep	CDS	14341333	14341396	.	-	0	Parent=Os01t0356400-01
Chr01	irgsp1_rep	CDS	14340872	14341111	.	-	2	Parent=Os01t0356400-01
Chr01	irgsp1_rep	CDS	14340624	14340724	.	-	2	Parent=Os01t0356400-01
Chr01	irgsp1_rep	three_prime_UTR	14340326	14340623	.	-	.	Parent=Os01t0356400-01
Chr01	irgsp1_rep	mRNA	14377090	14377957	.	-	.	ID=Os01t0356450-00;Name=Os01t0356450-00;Locus_id=Os01g0356450;Note=Non-protein coding transcript.;Transcript_evidence=CT835510 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os01t0356450-00
Chr01	irgsp1_rep	exon	14377807	14377957	.	-	.	Parent=Os01t0356450-00
Chr01	irgsp1_rep	exon	14377589	14377700	.	-	.	Parent=Os01t0356450-00
Chr01	irgsp1_rep	exon	14377090	14377293	.	-	.	Parent=Os01t0356450-00
Chr01	irgsp1_rep	mRNA	14391999	14398598	.	-	.	ID=Os01t0356500-01;Name=Os01t0356500-01;Locus_id=Os01g0356500;Oryzabase Gene Symbol Synonym(s)=OsSTA15;Note=Thiamin pyrophosphokinase%2C eukaryotic domain containing protein.;Transcript_evidence=AK070843 (DDBJ%2C Best hit);ORF_evidence=NP_001152100.1 (RefSeq);GO=Biological Process: thiamine metabolic process (GO:0006772),Biological Process: thiamine diphosphate biosynthetic process (GO:0009229),Molecular Function: thiamine diphosphokinase activity (GO:0004788),Molecular Function: ATP binding (GO:0005524);InterPro=Thiamin pyrophosphokinase (IPR006282),Thiamin pyrophosphokinase%2C catalytic domain (IPR007371),Thiamin pyrophosphokinase%2C vitamin B1-binding domain (IPR007373),Thiamin pyrophosphokinase%2C eukaryotic (IPR016966);NIAS_FLcDNA=J023070N03;Oryzabase=19327;Expression=AK070843;TENOR=Os01t0356500-01;KEGG=Os01t0356500-01 (EC:2.7.6.2)
Chr01	irgsp1_rep	five_prime_UTR	14398452	14398598	.	-	.	Parent=Os01t0356500-01
Chr01	irgsp1_rep	five_prime_UTR	14397515	14397542	.	-	.	Parent=Os01t0356500-01
Chr01	irgsp1_rep	CDS	14397355	14397514	.	-	0	Parent=Os01t0356500-01
Chr01	irgsp1_rep	CDS	14397171	14397267	.	-	2	Parent=Os01t0356500-01
Chr01	irgsp1_rep	CDS	14395507	14395579	.	-	1	Parent=Os01t0356500-01
Chr01	irgsp1_rep	CDS	14394552	14394653	.	-	0	Parent=Os01t0356500-01
Chr01	irgsp1_rep	CDS	14394154	14394403	.	-	0	Parent=Os01t0356500-01
Chr01	irgsp1_rep	CDS	14392696	14392817	.	-	2	Parent=Os01t0356500-01
Chr01	irgsp1_rep	three_prime_UTR	14391999	14392695	.	-	.	Parent=Os01t0356500-01
Chr01	irgsp1_rep	mRNA	14414670	14435665	.	+	.	ID=Os01t0356800-00;Name=Os01t0356800-00;Locus_id=Os01g0356800;Oryzabase Gene Symbol Synonym(s)=OsEnS-6;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 6;Note=Domain of unknown function DUF3406%2C chloroplast translocase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001043005.1 (RefSeq);InterPro=Domain of unknown function DUF3406%2C chloroplast translocase (IPR024283);Oryzabase=18353;TENOR=Os01t0356800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	14414670	14429972	.	+	0	Parent=Os01t0356800-00
Chr01	irgsp1_rep	CDS	14430144	14430378	.	+	0	Parent=Os01t0356800-00
Chr01	irgsp1_rep	CDS	14430541	14430908	.	+	2	Parent=Os01t0356800-00
Chr01	irgsp1_rep	CDS	14435543	14435665	.	+	0	Parent=Os01t0356800-00
Chr01	irgsp1_rep	mRNA	14437890	14439688	.	-	.	ID=Os01t0356900-01;Name=Os01t0356900-01;Locus_id=Os01g0356900;Oryzabase Gene Name Synonym(s)=Extensin family protein;Note=Similar to Extensin-like protein.;Transcript_evidence=AK064742 (DDBJ%2C Best hit);ORF_evidence=B8A7W6 (UniProt);NIAS_FLcDNA=002-120-D10;Oryzabase=21945;Expression=AK064742;TENOR=Os01t0356900-01;KEGG=Os01t0356900-01
Chr01	irgsp1_rep	five_prime_UTR	14439596	14439688	.	-	.	Parent=Os01t0356900-01
Chr01	irgsp1_rep	CDS	14438084	14439595	.	-	0	Parent=Os01t0356900-01
Chr01	irgsp1_rep	three_prime_UTR	14437890	14438083	.	-	.	Parent=Os01t0356900-01
Chr01	irgsp1_rep	mRNA	14444478	14445110	.	+	.	ID=Os01t0356951-01;Name=Os01t0356951-01;Locus_id=Os01g0356951;RAP-DB Gene Symbol Synonym(s)=ESP;RAP-DB Gene Name Synonym(s)=Epigenetic Short Panicle;CGSNL Gene Symbol=ESP;CGSNL Gene Name=EPIGENETIC SHORT PANICLE;Oryzabase Gene Symbol Synonym(s)=OsESP;Oryzabase Gene Name Synonym(s)=Epigenetic Short Panicle;Note=Putative long noncoding RNA%2C Regulation of panicle architecture;Transcript_evidence=AK111025;ORF_evidence=NONE;NIAS_FLcDNA=002-174-H03;Manual Curation=April 11%2C 2019;Literature_PMID=30945026;Oryzabase=22823;Expression=AK111025;TENOR=Os01t0356951-01;KEGG=Os01t0356951-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	exon	14444478	14445110	.	+	.	Parent=Os01t0356951-01
Chr01	irgsp1_rep	mRNA	14446913	14453453	.	+	.	ID=Os01t0357100-01;Name=Os01t0357100-01;Locus_id=Os01g0357100;RAP-DB Gene Symbol Synonym(s)=NiR%2C OsNiR%2C PSR1;RAP-DB Gene Name Synonym(s)=PROMOTER OF SHOOT REGENERATION 1%2C Promoter of shoot regeneration 1%2C ferredoxin-nitrite reductase;CGSNL Gene Symbol=PSR1;CGSNL Gene Name=PROMOTOR OF SHOOT REGENERATION 1;Oryzabase Gene Symbol Synonym(s)=PSR1%2C NiR%2C OsNiR%2C OsNIR1%2C NIR1%2C FD-NiR%2C OsNiR2;Oryzabase Gene Name Synonym(s)=Promotor of shoot regeneration-1%2C ferredoxin-nitrite reductase%2C "Ferredoxin--nitrite reductase%2C chloroplastic";Note=Ferredoxin-nitrite reductase%2C Nitrate reduction (assimilation)%2C Determination of regeneration ability;Transcript_evidence=D50556 (Kinmaze),AK103604 (6bp deletion);ORF_evidence=Q42997;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: heme binding (GO:0020037),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=Nitrite/Sulfite reductase ferredoxin-like domain (IPR005117),Nitrite/sulphite reductase 4Fe-4S domain (IPR006067),Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site (IPR006066);NIAS_FLcDNA=J033133G10 (6bp deletion);Manual Curation=July 20%2C 2017;Literature_PMID=16091467,8541663;Oryzabase=6344;Expression=AK103604;TENOR=Os01t0357100-01;KEGG=Os01t0357100-01 (EC:1.7.7.1);B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	14446913	14447426	.	+	.	Parent=Os01t0357100-01
Chr01	irgsp1_rep	CDS	14447427	14447835	.	+	0	Parent=Os01t0357100-01
Chr01	irgsp1_rep	CDS	14451681	14452035	.	+	2	Parent=Os01t0357100-01
Chr01	irgsp1_rep	CDS	14452138	14452426	.	+	1	Parent=Os01t0357100-01
Chr01	irgsp1_rep	CDS	14452520	14453257	.	+	0	Parent=Os01t0357100-01
Chr01	irgsp1_rep	three_prime_UTR	14453258	14453453	.	+	.	Parent=Os01t0357100-01
Chr01	irgsp1_rep	mRNA	14447371	14453454	.	+	.	ID=Os01t0357100-02;Name=Os01t0357100-02;Locus_id=Os01g0357100;CGSNL Gene Symbol=PSR1;CGSNL Gene Name=PROMOTOR OF SHOOT REGENERATION 1;Oryzabase Gene Symbol Synonym(s)=PSR1%2C NiR%2C OsNiR%2C OsNIR1%2C NIR1%2C FD-NiR%2C OsNiR2;Oryzabase Gene Name Synonym(s)=Promotor of shoot regeneration-1%2C ferredoxin-nitrite reductase%2C "Ferredoxin--nitrite reductase%2C chloroplastic";Note=Similar to Ferredoxin-nitrite reductase.;Transcript_evidence=AK061893 (DDBJ%2C Best hit);ORF_evidence=B8YEL1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: heme binding (GO:0020037),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=Nitrite/sulphite reductase%2C hemoprotein beta-component%2C ferrodoxin-like (IPR005117),Nitrite/sulphite reductase iron-sulphur/siroheam-binding site (IPR006066),Nitrite/sulphite reductase 4Fe-4S domain (IPR006067);NIAS_FLcDNA=001-041-G06;Oryzabase=6344;Expression=AK061893;TENOR=Os01t0357100-02;KEGG=Os01t0357100-02 (EC:1.7.7.1)
Chr01	irgsp1_rep	five_prime_UTR	14447371	14447426	.	+	.	Parent=Os01t0357100-02
Chr01	irgsp1_rep	CDS	14447427	14447835	.	+	0	Parent=Os01t0357100-02
Chr01	irgsp1_rep	CDS	14451681	14452035	.	+	2	Parent=Os01t0357100-02
Chr01	irgsp1_rep	CDS	14452138	14453257	.	+	1	Parent=Os01t0357100-02
Chr01	irgsp1_rep	three_prime_UTR	14453258	14453454	.	+	.	Parent=Os01t0357100-02
Chr01	irgsp1_rep	mRNA	14447341	14453462	.	-	.	ID=Os01t0357150-00;Name=Os01t0357150-00;Locus_id=Os01g0357150;Note=Hypothetical protein.;Transcript_evidence=tplb0056g12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0357150-00
Chr01	irgsp1_rep	five_prime_UTR	14453339	14453462	.	-	.	Parent=Os01t0357150-00
Chr01	irgsp1_rep	CDS	14452516	14453338	.	-	0	Parent=Os01t0357150-00
Chr01	irgsp1_rep	CDS	14452138	14452422	.	-	2	Parent=Os01t0357150-00
Chr01	irgsp1_rep	CDS	14451681	14452035	.	-	2	Parent=Os01t0357150-00
Chr01	irgsp1_rep	CDS	14447700	14447835	.	-	1	Parent=Os01t0357150-00
Chr01	irgsp1_rep	three_prime_UTR	14447341	14447699	.	-	.	Parent=Os01t0357150-00
Chr01	irgsp1_rep	mRNA	14453690	14454549	.	+	.	ID=Os01t0357200-01;Name=Os01t0357200-01;Locus_id=Os01g0357200;Note=Sterol-binding domain containing protein.;Transcript_evidence=AK099419 (DDBJ%2C Best hit);ORF_evidence=NP_001150496.1 (RefSeq);GO=Molecular Function: sterol binding (GO:0032934);InterPro=SCP2 sterol-binding domain (IPR003033);NIAS_FLcDNA=J013006N13;Expression=AK099419;TENOR=Os01t0357200-01;KEGG=Os01t0357200-01
Chr01	irgsp1_rep	five_prime_UTR	14453690	14453751	.	+	.	Parent=Os01t0357200-01
Chr01	irgsp1_rep	CDS	14453752	14453877	.	+	0	Parent=Os01t0357200-01
Chr01	irgsp1_rep	CDS	14453987	14454050	.	+	0	Parent=Os01t0357200-01
Chr01	irgsp1_rep	CDS	14454122	14454190	.	+	2	Parent=Os01t0357200-01
Chr01	irgsp1_rep	CDS	14454308	14454318	.	+	2	Parent=Os01t0357200-01
Chr01	irgsp1_rep	three_prime_UTR	14454319	14454549	.	+	.	Parent=Os01t0357200-01
Chr01	irgsp1_rep	mRNA	14459951	14461690	.	+	.	ID=Os01t0357400-01;Name=Os01t0357400-01;Locus_id=Os01g0357400;CGSNL Gene Symbol=AMY1B;CGSNL Gene Name=ALPHA-AMYLASE 1B;Oryzabase Gene Symbol Synonym(s)=Amy1B*(RAmy1B)%2C AMYC%2C RAmy1B%2C Amy2%2C Amy1B%2C Osamy-c%2C OSamy-c%2C OSamy--c;Oryzabase Gene Name Synonym(s)=Alpha-amylase1B%2C Alpha-amylase isozyme C%2C Alpha-amylase isozyme 1B%2C Alpha-amylase-1B%2C Amylase-2%2C ALPHA-AMYLASE 1-3%2C alpha-amylase c%2C high PI alpha amylase;Note=Similar to Alpha-amylase.;Transcript_evidence=AK063489 (DDBJ%2C Best hit);ORF_evidence=P17654 (UniProt);NIAS_FLcDNA=001-116-C08;Oryzabase=418;TENOR=Os01t0357400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	14459951	14459952	.	+	.	Parent=Os01t0357400-01
Chr01	irgsp1_rep	CDS	14459953	14460099	.	+	0	Parent=Os01t0357400-01
Chr01	irgsp1_rep	CDS	14460201	14460337	.	+	0	Parent=Os01t0357400-01
Chr01	irgsp1_rep	CDS	14460427	14460502	.	+	1	Parent=Os01t0357400-01
Chr01	irgsp1_rep	three_prime_UTR	14460503	14461084	.	+	.	Parent=Os01t0357400-01
Chr01	irgsp1_rep	three_prime_UTR	14461150	14461166	.	+	.	Parent=Os01t0357400-01
Chr01	irgsp1_rep	three_prime_UTR	14461255	14461690	.	+	.	Parent=Os01t0357400-01
Chr01	irgsp1_rep	mRNA	14462311	14462787	.	+	.	ID=Os01t0357500-00;Name=Os01t0357500-00;Locus_id=Os01g0357500;Note=Similar to Ferredoxin-nitrite reductase.;Transcript_evidence=EU969139 (DDBJ);ORF_evidence=B8YNY7 (UniProt);TENOR=Os01t0357500-00;KEGG=Os01t0357500-00 (EC:1.7.7.1)
Chr01	irgsp1_rep	CDS	14462311	14462610	.	+	0	Parent=Os01t0357500-00
Chr01	irgsp1_rep	three_prime_UTR	14462611	14462787	.	+	.	Parent=Os01t0357500-00
Chr01	irgsp1_rep	mRNA	14471243	14476738	.	+	.	ID=Os01t0357800-01;Name=Os01t0357800-01;Locus_id=Os01g0357800;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK120188 (DDBJ%2C Best hit);ORF_evidence=A2ZT11 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013034P09;Expression=AK120188;TENOR=Os01t0357800-01;KEGG=Os01t0357800-01
Chr01	irgsp1_rep	five_prime_UTR	14471243	14471348	.	+	.	Parent=Os01t0357800-01
Chr01	irgsp1_rep	five_prime_UTR	14471704	14471801	.	+	.	Parent=Os01t0357800-01
Chr01	irgsp1_rep	CDS	14471802	14474216	.	+	0	Parent=Os01t0357800-01
Chr01	irgsp1_rep	three_prime_UTR	14474217	14474597	.	+	.	Parent=Os01t0357800-01
Chr01	irgsp1_rep	three_prime_UTR	14474993	14475161	.	+	.	Parent=Os01t0357800-01
Chr01	irgsp1_rep	three_prime_UTR	14475333	14475727	.	+	.	Parent=Os01t0357800-01
Chr01	irgsp1_rep	three_prime_UTR	14475846	14475985	.	+	.	Parent=Os01t0357800-01
Chr01	irgsp1_rep	three_prime_UTR	14476080	14476292	.	+	.	Parent=Os01t0357800-01
Chr01	irgsp1_rep	three_prime_UTR	14476391	14476738	.	+	.	Parent=Os01t0357800-01
Chr01	irgsp1_rep	mRNA	14480825	14481553	.	-	.	ID=Os01t0357900-01;Name=Os01t0357900-01;Locus_id=Os01g0357900;CGSNL Gene Symbol=RALF4;CGSNL Gene Name=RAPID ALKALIZATION FACTOR 4;Oryzabase Gene Symbol Synonym(s)=OsRALF-4%2C OsRALF4%2C RALF-4;Oryzabase Gene Name Synonym(s)=Rapid alkalization factor 4;Note=Similar to RALF.;Transcript_evidence=AK067878 (DDBJ%2C Best hit);ORF_evidence=NP_001149446.1 (RefSeq);InterPro=Rapid ALkalinization Factor (IPR008801);NIAS_FLcDNA=J013123C07;Oryzabase=21108;Expression=AK067878;TENOR=Os01t0357900-01;KEGG=Os01t0357900-01
Chr01	irgsp1_rep	five_prime_UTR	14481451	14481553	.	-	.	Parent=Os01t0357900-01
Chr01	irgsp1_rep	CDS	14481097	14481450	.	-	0	Parent=Os01t0357900-01
Chr01	irgsp1_rep	three_prime_UTR	14480825	14481096	.	-	.	Parent=Os01t0357900-01
Chr01	irgsp1_rep	mRNA	14486394	14487138	.	-	.	ID=Os01t0358100-01;Name=Os01t0358100-01;Locus_id=Os01g0358100;CGSNL Gene Symbol=RALF6;CGSNL Gene Name=RAPID ALKALIZATION FACTOR 6;Oryzabase Gene Symbol Synonym(s)=OsRALF-6%2C OsRALF6%2C RALF-6;Oryzabase Gene Name Synonym(s)=Rapid alkalization factor 6;Note=Rapid ALkalinization Factor family protein.;Transcript_evidence=AK105209 (DDBJ%2C Best hit);ORF_evidence=NP_001149446.1 (RefSeq);InterPro=Rapid ALkalinization Factor (IPR008801);NIAS_FLcDNA=001-109-A08;Oryzabase=21110;Expression=AK105209;TENOR=Os01t0358100-01;KEGG=Os01t0358100-01
Chr01	irgsp1_rep	five_prime_UTR	14487073	14487138	.	-	.	Parent=Os01t0358100-01
Chr01	irgsp1_rep	CDS	14486722	14487072	.	-	0	Parent=Os01t0358100-01
Chr01	irgsp1_rep	three_prime_UTR	14486394	14486721	.	-	.	Parent=Os01t0358100-01
Chr01	irgsp1_rep	mRNA	14506819	14513133	.	-	.	ID=Os01t0358300-01;Name=Os01t0358300-01;Locus_id=Os01g0358300;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK060388 (DDBJ%2C Best hit),AK072081 (DDBJ%2C Best hit);ORF_evidence=NP_171790.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide TPR-1 (IPR001440),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734),Protein of unknown function DUF3493 (IPR021883);NIAS_FLcDNA=001-009-G10,J013116G03;Expression=AK060388;TENOR=Os01t0358300-01;KEGG=Os01t0358300-01
Chr01	irgsp1_rep	five_prime_UTR	14513109	14513133	.	-	.	Parent=Os01t0358300-01
Chr01	irgsp1_rep	CDS	14512830	14513108	.	-	0	Parent=Os01t0358300-01
Chr01	irgsp1_rep	CDS	14511103	14511206	.	-	0	Parent=Os01t0358300-01
Chr01	irgsp1_rep	CDS	14510881	14511016	.	-	1	Parent=Os01t0358300-01
Chr01	irgsp1_rep	CDS	14510125	14510356	.	-	0	Parent=Os01t0358300-01
Chr01	irgsp1_rep	CDS	14509116	14509273	.	-	2	Parent=Os01t0358300-01
Chr01	irgsp1_rep	CDS	14508813	14508998	.	-	0	Parent=Os01t0358300-01
Chr01	irgsp1_rep	CDS	14508601	14508701	.	-	0	Parent=Os01t0358300-01
Chr01	irgsp1_rep	CDS	14507265	14507361	.	-	1	Parent=Os01t0358300-01
Chr01	irgsp1_rep	CDS	14506968	14507042	.	-	0	Parent=Os01t0358300-01
Chr01	irgsp1_rep	three_prime_UTR	14506819	14506967	.	-	.	Parent=Os01t0358300-01
Chr01	irgsp1_rep	mRNA	14506676	14506960	.	-	.	ID=Os01t0358300-03;Name=Os01t0358300-03;Locus_id=Os01g0358300;Note=Non-protein coding transcript.;Transcript_evidence=AK058532 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-017-A09;TENOR=Os01t0358300-03
Chr01	irgsp1_rep	exon	14506676	14506960	.	-	.	Parent=Os01t0358300-03
Chr01	irgsp1_rep	mRNA	14513332	14515250	.	+	.	ID=Os01t0358400-01;Name=Os01t0358400-01;Locus_id=Os01g0358400;Oryzabase Gene Symbol Synonym(s)=RPS4;Oryzabase Gene Name Synonym(s)=ribosomal protein S4%2C ribosomal protein small subunit 4;Note=Similar to 40S ribosomal protein S4.;Transcript_evidence=AK061826 (DDBJ%2C Best hit);ORF_evidence=A2WPV4 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S4e (IPR000876),RNA-binding S4 (IPR002942),KOW (IPR005824),Ribosomal protein S4e%2C N-terminal (IPR013843),Ribosomal protein S4e%2C central (IPR013845),Ribosomal protein S4e%2C N-terminal%2C conserved site (IPR018199);NIAS_FLcDNA=001-040-C06;Oryzabase=22168;Expression=AK061826;TENOR=Os01t0358400-01;KEGG=Os01t0358400-01
Chr01	irgsp1_rep	five_prime_UTR	14513332	14513418	.	+	.	Parent=Os01t0358400-01
Chr01	irgsp1_rep	CDS	14513419	14513421	.	+	0	Parent=Os01t0358400-01
Chr01	irgsp1_rep	CDS	14513996	14514073	.	+	0	Parent=Os01t0358400-01
Chr01	irgsp1_rep	CDS	14514182	14514362	.	+	0	Parent=Os01t0358400-01
Chr01	irgsp1_rep	CDS	14514469	14514566	.	+	2	Parent=Os01t0358400-01
Chr01	irgsp1_rep	CDS	14514663	14515100	.	+	0	Parent=Os01t0358400-01
Chr01	irgsp1_rep	three_prime_UTR	14515101	14515250	.	+	.	Parent=Os01t0358400-01
Chr01	irgsp1_rep	mRNA	14513995	14515154	.	-	.	ID=Os01t0358551-00;Name=Os01t0358551-00;Locus_id=Os01g0358551;Note=Conserved hypothetical protein.;Transcript_evidence=BT017558 (DDBJ);ORF_evidence=XP_002278245.1 (RefSeq);TENOR=Os01t0358551-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	14514661	14515154	.	-	0	Parent=Os01t0358551-00
Chr01	irgsp1_rep	CDS	14514441	14514564	.	-	1	Parent=Os01t0358551-00
Chr01	irgsp1_rep	three_prime_UTR	14514163	14514440	.	-	.	Parent=Os01t0358551-00
Chr01	irgsp1_rep	three_prime_UTR	14513995	14514058	.	-	.	Parent=Os01t0358551-00
Chr01	irgsp1_rep	mRNA	14529887	14531604	.	-	.	ID=Os01t0358700-01;Name=Os01t0358700-01;Locus_id=Os01g0358700;Note=Similar to Powdery mildew resistance protein PM3b.;Transcript_evidence=AK318517 (DDBJ%2C Best hit);ORF_evidence=C1K3M3 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J043004B20;TENOR=Os01t0358700-01;KEGG=Os01t0358700-01
Chr01	irgsp1_rep	five_prime_UTR	14531534	14531604	.	-	.	Parent=Os01t0358700-01
Chr01	irgsp1_rep	CDS	14530073	14531533	.	-	0	Parent=Os01t0358700-01
Chr01	irgsp1_rep	three_prime_UTR	14529887	14530072	.	-	.	Parent=Os01t0358700-01
Chr01	irgsp1_rep	mRNA	14544114	14544749	.	+	.	ID=Os01t0358800-00;Name=Os01t0358800-00;Locus_id=Os01g0358800;Note=Similar to N-acetyltransferase.;Transcript_evidence=DQ244456 (DDBJ);ORF_evidence=NP_001150788.1 (RefSeq);InterPro=Acyl-CoA N-acyltransferase (IPR016181);TENOR=Os01t0358800-00
Chr01	irgsp1_rep	CDS	14544114	14544749	.	+	0	Parent=Os01t0358800-00
Chr01	irgsp1_rep	mRNA	14545123	14545507	.	-	.	ID=Os01t0358900-00;Name=Os01t0358900-00;Locus_id=Os01g0358900;Note=Similar to GDHB glutamate dehydrogenase.;Transcript_evidence=ab initio prediction;ORF_evidence=E9NX12 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NAD(P)-binding domain (IPR016040);TENOR=Os01t0358900-00;KEGG=Os01t0358900-00 (EC:1.4.1.3)
Chr01	irgsp1_rep	CDS	14545374	14545507	.	-	0	Parent=Os01t0358900-00
Chr01	irgsp1_rep	CDS	14545123	14545327	.	-	1	Parent=Os01t0358900-00
Chr01	irgsp1_rep	mRNA	14579512	14581963	.	-	.	ID=Os01t0359400-01;Name=Os01t0359400-01;Locus_id=Os01g0359400;Note=NB-ARC domain containing protein.;Transcript_evidence=AK063509 (DDBJ%2C Best hit);ORF_evidence=C1K3M3 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=001-116-F10;Expression=AK063509;TENOR=Os01t0359400-01;KEGG=Os01t0359400-01
Chr01	irgsp1_rep	five_prime_UTR	14581151	14581963	.	-	.	Parent=Os01t0359400-01
Chr01	irgsp1_rep	CDS	14579732	14581150	.	-	0	Parent=Os01t0359400-01
Chr01	irgsp1_rep	three_prime_UTR	14579512	14579731	.	-	.	Parent=Os01t0359400-01
Chr01	irgsp1_rep	mRNA	14577199	14581193	.	-	.	ID=Os01t0359400-02;Name=Os01t0359400-02;Locus_id=Os01g0359400;Note=NB-ARC domain containing protein.;Transcript_evidence=AK072056 (DDBJ%2C Best hit);ORF_evidence=Q5ZBW9 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013110O03;Expression=AK072056;TENOR=Os01t0359400-02;KEGG=Os01t0359400-02
Chr01	irgsp1_rep	five_prime_UTR	14581151	14581193	.	-	.	Parent=Os01t0359400-02
Chr01	irgsp1_rep	CDS	14579732	14581150	.	-	0	Parent=Os01t0359400-02
Chr01	irgsp1_rep	three_prime_UTR	14579294	14579731	.	-	.	Parent=Os01t0359400-02
Chr01	irgsp1_rep	three_prime_UTR	14577199	14579200	.	-	.	Parent=Os01t0359400-02
Chr01	irgsp1_rep	mRNA	14576601	14581193	.	-	.	ID=Os01t0359400-03;Name=Os01t0359400-03;Locus_id=Os01g0359400;Note=NB-ARC domain containing protein.;Transcript_evidence=AK066435 (DDBJ%2C Best hit);ORF_evidence=Q5ZBW9 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013063I04;Expression=AK066435;TENOR=Os01t0359400-03;KEGG=Os01t0359400-03
Chr01	irgsp1_rep	five_prime_UTR	14581151	14581193	.	-	.	Parent=Os01t0359400-03
Chr01	irgsp1_rep	CDS	14579732	14581150	.	-	0	Parent=Os01t0359400-03
Chr01	irgsp1_rep	three_prime_UTR	14576601	14579731	.	-	.	Parent=Os01t0359400-03
Chr01	irgsp1_rep	mRNA	14587756	14591782	.	-	.	ID=Os01t0359600-00;Name=Os01t0359600-00;Locus_id=Os01g0359600;Note=Disease resistance protein domain containing protein.;Transcript_evidence=AK372329 (DDBJ);ORF_evidence=A2ZT20 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: protein binding (GO:0005515),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),Leucine-rich repeat (IPR001611),NB-ARC (IPR002182);TENOR=Os01t0359600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	14591755	14591782	.	-	.	Parent=Os01t0359600-00
Chr01	irgsp1_rep	CDS	14587756	14591754	.	-	0	Parent=Os01t0359600-00
Chr01	irgsp1_rep	mRNA	14599119	14603058	.	-	.	ID=Os01t0359800-00;Name=Os01t0359800-00;Locus_id=Os01g0359800;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=AK371992 (DDBJ);ORF_evidence=Q8LM67 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: protein binding (GO:0005515),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),Leucine-rich repeat (IPR001611),NB-ARC (IPR002182);TENOR=Os01t0359800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	14602977	14603058	.	-	.	Parent=Os01t0359800-00
Chr01	irgsp1_rep	CDS	14599119	14602976	.	-	0	Parent=Os01t0359800-00
Chr01	irgsp1_rep	mRNA	14608644	14613681	.	-	.	ID=Os01t0360100-01;Name=Os01t0360100-01;Locus_id=Os01g0360100;Note=Similar to Powdery mildew resistance protein pm3f (Fragment).;Transcript_evidence=AK100554 (DDBJ%2C Best hit);ORF_evidence=A6N0J6 (UniProt);NIAS_FLcDNA=J023103M01;TENOR=Os01t0360100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	14613681	14613681	.	-	.	Parent=Os01t0360100-01
Chr01	irgsp1_rep	CDS	14613500	14613680	.	-	0	Parent=Os01t0360100-01
Chr01	irgsp1_rep	CDS	14612572	14612633	.	-	2	Parent=Os01t0360100-01
Chr01	irgsp1_rep	three_prime_UTR	14612528	14612571	.	-	.	Parent=Os01t0360100-01
Chr01	irgsp1_rep	three_prime_UTR	14611516	14612421	.	-	.	Parent=Os01t0360100-01
Chr01	irgsp1_rep	three_prime_UTR	14611224	14611408	.	-	.	Parent=Os01t0360100-01
Chr01	irgsp1_rep	three_prime_UTR	14610620	14610730	.	-	.	Parent=Os01t0360100-01
Chr01	irgsp1_rep	three_prime_UTR	14609357	14609605	.	-	.	Parent=Os01t0360100-01
Chr01	irgsp1_rep	three_prime_UTR	14608644	14609221	.	-	.	Parent=Os01t0360100-01
Chr01	irgsp1_rep	mRNA	14611322	14611896	.	+	.	ID=Os01t0360150-01;Name=Os01t0360150-01;Locus_id=Os01g0360150;Note=Hypothetical protein.;Transcript_evidence=AK062321 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-101-C11;Expression=AK062321;TENOR=Os01t0360150-01;KEGG=Os01t0360150-01
Chr01	irgsp1_rep	five_prime_UTR	14611322	14611358	.	+	.	Parent=Os01t0360150-01
Chr01	irgsp1_rep	CDS	14611359	14611772	.	+	0	Parent=Os01t0360150-01
Chr01	irgsp1_rep	three_prime_UTR	14611773	14611896	.	+	.	Parent=Os01t0360150-01
Chr01	irgsp1_rep	mRNA	14621511	14627934	.	-	.	ID=Os01t0360200-01;Name=Os01t0360200-01;Locus_id=Os01g0360200;RAP-DB Gene Symbol Synonym(s)=Os rbohB%2C OsRbohB;RAP-DB Gene Name Synonym(s)=respiratory burst oxidase homolog B%2C respiratory burst oxidase homologue B;CGSNL Gene Symbol=RBOHB;CGSNL Gene Name=RESPIRATORY BURST OXIDASE HOMOLOG B;Oryzabase Gene Symbol Synonym(s)=rbohB%2C OsrbohB%2C Os rbohB%2C OsRbohB%2C OsNox1%2C Nox1%2C Os-RbohB%2C RbohB%2C OsRboh1%2C Rboh1;Oryzabase Gene Name Synonym(s)=Respiratory Burst Oxidase Homolog B%2C Respiratory Burst Oxidase Homologue B%2C NADPH oxidase 1;Note=NADPH oxidase%2C Disease resistance;Transcript_evidence=AK065117,AK121916;ORF_evidence=Q5ZAJ0;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on NAD(P)H%2C oxygen as acceptor (GO:0050664),Cellular Component: membrane (GO:0016020);InterPro=EF-hand domain pair (IPR011992),Riboflavin synthase-like beta-barrel (IPR017938),Ferredoxin-NADP reductase (FNR)%2C nucleotide-binding domain (IPR039261),CytoChrome b245%2C heavy chain (IPR000778),NADPH oxidase Respiratory burst (IPR013623),EF-hand domain (IPR002048),Ferric reductase transmembrane component-like domain (IPR013130),FAD-binding domain%2C ferredoxin reductase-type (IPR017927),FAD-binding 8 (IPR013112),Ferric reductase%2C NAD binding domain (IPR013121),EF-Hand 1%2C calcium-binding site (IPR018247);NIAS_FLcDNA=J013001O12,J033106C16;Manual Curation=July 14%2C 2020;Literature_PMID=27701783,22528669,18156215;Oryzabase=7460;Expression=AK065117;TENOR=Os01t0360200-01;KEGG=Os01t0360200-01;Subcellular location=plasma membrane (GO:0005886)
Chr01	irgsp1_rep	five_prime_UTR	14627613	14627934	.	-	.	Parent=Os01t0360200-01
Chr01	irgsp1_rep	five_prime_UTR	14626621	14626666	.	-	.	Parent=Os01t0360200-01
Chr01	irgsp1_rep	CDS	14626062	14626620	.	-	0	Parent=Os01t0360200-01
Chr01	irgsp1_rep	CDS	14625805	14625964	.	-	2	Parent=Os01t0360200-01
Chr01	irgsp1_rep	CDS	14625526	14625574	.	-	1	Parent=Os01t0360200-01
Chr01	irgsp1_rep	CDS	14625319	14625432	.	-	0	Parent=Os01t0360200-01
Chr01	irgsp1_rep	CDS	14624811	14625245	.	-	0	Parent=Os01t0360200-01
Chr01	irgsp1_rep	CDS	14623410	14623796	.	-	0	Parent=Os01t0360200-01
Chr01	irgsp1_rep	CDS	14623209	14623301	.	-	0	Parent=Os01t0360200-01
Chr01	irgsp1_rep	CDS	14622913	14623028	.	-	0	Parent=Os01t0360200-01
Chr01	irgsp1_rep	CDS	14622718	14622820	.	-	1	Parent=Os01t0360200-01
Chr01	irgsp1_rep	CDS	14622460	14622539	.	-	0	Parent=Os01t0360200-01
Chr01	irgsp1_rep	CDS	14621813	14622324	.	-	1	Parent=Os01t0360200-01
Chr01	irgsp1_rep	CDS	14621620	14621729	.	-	2	Parent=Os01t0360200-01
Chr01	irgsp1_rep	three_prime_UTR	14621511	14621619	.	-	.	Parent=Os01t0360200-01
Chr01	irgsp1_rep	mRNA	14621368	14626628	.	-	.	ID=Os01t0360200-03;Name=Os01t0360200-03;Locus_id=Os01g0360200;CGSNL Gene Symbol=RBOHB;CGSNL Gene Name=RESPIRATORY BURST OXIDASE HOMOLOG B;Oryzabase Gene Symbol Synonym(s)=rbohB%2C OsrbohB%2C Os rbohB%2C OsRbohB%2C OsNox1%2C Nox1%2C Os-RbohB%2C RbohB%2C OsRboh1%2C Rboh1;Oryzabase Gene Name Synonym(s)=Respiratory Burst Oxidase Homolog B%2C Respiratory Burst Oxidase Homologue B%2C NADPH oxidase 1;Note=Similar to Respiratory burst oxidase homolog.;Transcript_evidence=AK060770 (DDBJ%2C Best hit);ORF_evidence=Q5ZAJ0 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: iron ion binding (GO:0005506),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: oxidoreductase activity%2C acting on NADH or NADPH%2C oxygen as acceptor (GO:0050664);InterPro=CytoChrome b245%2C heavy chain (IPR000778),EF-hand-like domain (IPR011992),FAD-binding 8 (IPR013112),Ferric reductase%2C NAD binding (IPR013121),Flavoprotein transmembrane component (IPR013130),NADPH oxidase Respiratory burst (IPR013623),Ferredoxin reductase-type FAD-binding domain (IPR017927),Riboflavin synthase-like beta-barrel (IPR017938),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249);NIAS_FLcDNA=001-033-B03;Oryzabase=7460;Expression=AK060770;TENOR=Os01t0360200-03;KEGG=Os01t0360200-03
Chr01	irgsp1_rep	five_prime_UTR	14626621	14626628	.	-	.	Parent=Os01t0360200-03
Chr01	irgsp1_rep	CDS	14626062	14626620	.	-	0	Parent=Os01t0360200-03
Chr01	irgsp1_rep	CDS	14625805	14625964	.	-	2	Parent=Os01t0360200-03
Chr01	irgsp1_rep	CDS	14625526	14625574	.	-	1	Parent=Os01t0360200-03
Chr01	irgsp1_rep	CDS	14625319	14625432	.	-	0	Parent=Os01t0360200-03
Chr01	irgsp1_rep	CDS	14624811	14625245	.	-	0	Parent=Os01t0360200-03
Chr01	irgsp1_rep	CDS	14623410	14623796	.	-	0	Parent=Os01t0360200-03
Chr01	irgsp1_rep	CDS	14623209	14623301	.	-	0	Parent=Os01t0360200-03
Chr01	irgsp1_rep	CDS	14622913	14623028	.	-	0	Parent=Os01t0360200-03
Chr01	irgsp1_rep	CDS	14622718	14622820	.	-	1	Parent=Os01t0360200-03
Chr01	irgsp1_rep	CDS	14622460	14622539	.	-	0	Parent=Os01t0360200-03
Chr01	irgsp1_rep	CDS	14621813	14622324	.	-	1	Parent=Os01t0360200-03
Chr01	irgsp1_rep	CDS	14621620	14621729	.	-	2	Parent=Os01t0360200-03
Chr01	irgsp1_rep	three_prime_UTR	14621368	14621619	.	-	.	Parent=Os01t0360200-03
Chr01	irgsp1_rep	mRNA	14621567	14626552	.	+	.	ID=Os01t0360333-00;Name=Os01t0360333-00;Locus_id=Os01g0360333;Note=Hypothetical protein.;Transcript_evidence=tplb0025i04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0360333-00
Chr01	irgsp1_rep	five_prime_UTR	14621567	14621718	.	+	.	Parent=Os01t0360333-00
Chr01	irgsp1_rep	five_prime_UTR	14621799	14622313	.	+	.	Parent=Os01t0360333-00
Chr01	irgsp1_rep	five_prime_UTR	14622450	14622542	.	+	.	Parent=Os01t0360333-00
Chr01	irgsp1_rep	five_prime_UTR	14622723	14622800	.	+	.	Parent=Os01t0360333-00
Chr01	irgsp1_rep	CDS	14622801	14622822	.	+	0	Parent=Os01t0360333-00
Chr01	irgsp1_rep	CDS	14622910	14623026	.	+	2	Parent=Os01t0360333-00
Chr01	irgsp1_rep	CDS	14623207	14623299	.	+	2	Parent=Os01t0360333-00
Chr01	irgsp1_rep	CDS	14623402	14623436	.	+	2	Parent=Os01t0360333-00
Chr01	irgsp1_rep	three_prime_UTR	14623437	14623803	.	+	.	Parent=Os01t0360333-00
Chr01	irgsp1_rep	three_prime_UTR	14624821	14625242	.	+	.	Parent=Os01t0360333-00
Chr01	irgsp1_rep	three_prime_UTR	14625316	14625463	.	+	.	Parent=Os01t0360333-00
Chr01	irgsp1_rep	three_prime_UTR	14625790	14625961	.	+	.	Parent=Os01t0360333-00
Chr01	irgsp1_rep	three_prime_UTR	14626059	14626212	.	+	.	Parent=Os01t0360333-00
Chr01	irgsp1_rep	three_prime_UTR	14626357	14626552	.	+	.	Parent=Os01t0360333-00
Chr01	irgsp1_rep	mRNA	14679306	14683391	.	-	.	ID=Os01t0360600-01;Name=Os01t0360600-01;Locus_id=Os01g0360600;Note=Dephospho-CoA kinase family protein.;Transcript_evidence=AK069339 (DDBJ%2C Best hit);ORF_evidence=B6T8Y9 (UniProt);GO=Biological Process: coenzyme A biosynthetic process (GO:0015937),Molecular Function: dephospho-CoA kinase activity (GO:0004140),Molecular Function: ATP binding (GO:0005524);InterPro=Dephospho-CoA kinase (IPR001977);NIAS_FLcDNA=J023014L08;Expression=AK069339;TENOR=Os01t0360600-01;KEGG=Os01t0360600-01 (EC:2.7.1.24)
Chr01	irgsp1_rep	five_prime_UTR	14683284	14683391	.	-	.	Parent=Os01t0360600-01
Chr01	irgsp1_rep	five_prime_UTR	14682684	14682698	.	-	.	Parent=Os01t0360600-01
Chr01	irgsp1_rep	CDS	14682576	14682683	.	-	0	Parent=Os01t0360600-01
Chr01	irgsp1_rep	CDS	14680328	14680473	.	-	0	Parent=Os01t0360600-01
Chr01	irgsp1_rep	CDS	14679571	14680009	.	-	1	Parent=Os01t0360600-01
Chr01	irgsp1_rep	three_prime_UTR	14679306	14679570	.	-	.	Parent=Os01t0360600-01
Chr01	irgsp1_rep	mRNA	14705121	14705998	.	-	.	ID=Os01t0361000-01;Name=Os01t0361000-01;Locus_id=Os01g0361000;Note=Conserved hypothetical protein.;Transcript_evidence=AK110594 (DDBJ%2C Best hit);ORF_evidence=Q6L598 (UniProt);NIAS_FLcDNA=002-168-F10;TENOR=Os01t0361000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	14705991	14705998	.	-	.	Parent=Os01t0361000-01
Chr01	irgsp1_rep	CDS	14705817	14705990	.	-	0	Parent=Os01t0361000-01
Chr01	irgsp1_rep	three_prime_UTR	14705121	14705816	.	-	.	Parent=Os01t0361000-01
Chr01	irgsp1_rep	mRNA	14702436	14705973	.	-	.	ID=Os01t0361000-02;Name=Os01t0361000-02;Locus_id=Os01g0361000;Note=Conserved hypothetical protein.;Transcript_evidence=AK120275 (DDBJ%2C Best hit);ORF_evidence=B9EWQ3 (UniProt);NIAS_FLcDNA=J013048G02;TENOR=Os01t0361000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	14704174	14705973	.	-	.	Parent=Os01t0361000-02
Chr01	irgsp1_rep	CDS	14703902	14704173	.	-	0	Parent=Os01t0361000-02
Chr01	irgsp1_rep	CDS	14703803	14703806	.	-	1	Parent=Os01t0361000-02
Chr01	irgsp1_rep	three_prime_UTR	14703657	14703802	.	-	.	Parent=Os01t0361000-02
Chr01	irgsp1_rep	three_prime_UTR	14703438	14703548	.	-	.	Parent=Os01t0361000-02
Chr01	irgsp1_rep	three_prime_UTR	14702436	14702977	.	-	.	Parent=Os01t0361000-02
Chr01	irgsp1_rep	mRNA	14732018	14738430	.	-	.	ID=Os01t0361500-01;Name=Os01t0361500-01;Locus_id=Os01g0361500;Note=Phospholipid/glycerol acyltransferase domain containing protein.;Transcript_evidence=AK065466 (DDBJ%2C Best hit);ORF_evidence=B9EWQ4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Phospholipid/glycerol acyltransferase (IPR002123),Diacylglycerol acyltransferase (IPR007130);NIAS_FLcDNA=J013007F18;Expression=AK065466;TENOR=Os01t0361500-01;KEGG=Os01t0361500-01
Chr01	irgsp1_rep	five_prime_UTR	14738274	14738430	.	-	.	Parent=Os01t0361500-01
Chr01	irgsp1_rep	CDS	14737978	14738273	.	-	0	Parent=Os01t0361500-01
Chr01	irgsp1_rep	CDS	14737904	14737944	.	-	1	Parent=Os01t0361500-01
Chr01	irgsp1_rep	CDS	14737486	14737537	.	-	2	Parent=Os01t0361500-01
Chr01	irgsp1_rep	CDS	14736680	14736735	.	-	1	Parent=Os01t0361500-01
Chr01	irgsp1_rep	CDS	14736132	14736290	.	-	2	Parent=Os01t0361500-01
Chr01	irgsp1_rep	CDS	14735915	14736019	.	-	2	Parent=Os01t0361500-01
Chr01	irgsp1_rep	CDS	14735246	14735352	.	-	2	Parent=Os01t0361500-01
Chr01	irgsp1_rep	CDS	14734854	14734975	.	-	0	Parent=Os01t0361500-01
Chr01	irgsp1_rep	CDS	14734633	14734738	.	-	1	Parent=Os01t0361500-01
Chr01	irgsp1_rep	CDS	14734345	14734478	.	-	0	Parent=Os01t0361500-01
Chr01	irgsp1_rep	CDS	14733892	14734261	.	-	1	Parent=Os01t0361500-01
Chr01	irgsp1_rep	CDS	14733694	14733807	.	-	0	Parent=Os01t0361500-01
Chr01	irgsp1_rep	CDS	14733438	14733523	.	-	0	Parent=Os01t0361500-01
Chr01	irgsp1_rep	CDS	14732074	14732374	.	-	1	Parent=Os01t0361500-01
Chr01	irgsp1_rep	three_prime_UTR	14732018	14732073	.	-	.	Parent=Os01t0361500-01
Chr01	irgsp1_rep	mRNA	14742684	14743148	.	-	.	ID=Os01t0361700-01;Name=Os01t0361700-01;Locus_id=Os01g0361700;Note=Conserved hypothetical protein.;Transcript_evidence=AK242469 (DDBJ%2C Best hit);ORF_evidence=NP_001043024.2 (RefSeq);NIAS_FLcDNA=J080302F07;TENOR=Os01t0361700-01;KEGG=Os01t0361700-01
Chr01	irgsp1_rep	five_prime_UTR	14743148	14743148	.	-	.	Parent=Os01t0361700-01
Chr01	irgsp1_rep	CDS	14742953	14743147	.	-	0	Parent=Os01t0361700-01
Chr01	irgsp1_rep	three_prime_UTR	14742684	14742952	.	-	.	Parent=Os01t0361700-01
Chr01	irgsp1_rep	mRNA	14744917	14747063	.	+	.	ID=Os01t0361800-01;Name=Os01t0361800-01;Locus_id=Os01g0361800;Note=Hypothetical conserved gene.;Transcript_evidence=AK067294 (DDBJ%2C Best hit);ORF_evidence=B8A7Y3 (UniProt);NIAS_FLcDNA=J013102A03;Expression=AK067294;TENOR=Os01t0361800-01;KEGG=Os01t0361800-01
Chr01	irgsp1_rep	five_prime_UTR	14744917	14745124	.	+	.	Parent=Os01t0361800-01
Chr01	irgsp1_rep	CDS	14745183	14745401	.	+	0	Parent=Os01t0361800-01
Chr01	irgsp1_rep	three_prime_UTR	14745402	14747063	.	+	.	Parent=Os01t0361800-01
Chr01	irgsp1_rep	mRNA	14744918	14748525	.	+	.	ID=Os01t0361800-02;Name=Os01t0361800-02;Locus_id=Os01g0361800;Note=Hypothetical protein.;Transcript_evidence=AK122167 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033147N18;Expression=AK122167;TENOR=Os01t0361800-02;KEGG=Os01t0361800-02
Chr01	irgsp1_rep	five_prime_UTR	14744918	14745038	.	+	.	Parent=Os01t0361800-02
Chr01	irgsp1_rep	CDS	14745039	14745401	.	+	0	Parent=Os01t0361800-02
Chr01	irgsp1_rep	three_prime_UTR	14745402	14747262	.	+	.	Parent=Os01t0361800-02
Chr01	irgsp1_rep	three_prime_UTR	14747667	14748525	.	+	.	Parent=Os01t0361800-02
Chr01	irgsp1_rep	mRNA	14752203	14754630	.	+	.	ID=Os01t0362000-01;Name=Os01t0362000-01;Locus_id=Os01g0362000;Note=Conserved hypothetical protein.;Transcript_evidence=AK070658 (DDBJ%2C Best hit);ORF_evidence=A2ZT31 (UniProt);NIAS_FLcDNA=J023058E02;TENOR=Os01t0362000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	14752203	14754010	.	+	.	Parent=Os01t0362000-01
Chr01	irgsp1_rep	CDS	14754011	14754301	.	+	0	Parent=Os01t0362000-01
Chr01	irgsp1_rep	three_prime_UTR	14754302	14754630	.	+	.	Parent=Os01t0362000-01
Chr01	irgsp1_rep	mRNA	14754835	14764507	.	-	.	ID=Os01t0362100-01;Name=Os01t0362100-01;Locus_id=Os01g0362100;Note=Esterase/lipase/thioesterase domain containing protein.;Transcript_evidence=AK065319 (DDBJ%2C Best hit);ORF_evidence=NP_564662.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Diacylglycerol acyltransferase (IPR007130);NIAS_FLcDNA=J013002P11;Expression=AK065319;TENOR=Os01t0362100-01;KEGG=Os01t0362100-01
Chr01	irgsp1_rep	five_prime_UTR	14764425	14764507	.	-	.	Parent=Os01t0362100-01
Chr01	irgsp1_rep	CDS	14764043	14764424	.	-	0	Parent=Os01t0362100-01
Chr01	irgsp1_rep	CDS	14763522	14763573	.	-	2	Parent=Os01t0362100-01
Chr01	irgsp1_rep	CDS	14763102	14763157	.	-	1	Parent=Os01t0362100-01
Chr01	irgsp1_rep	CDS	14758734	14758892	.	-	2	Parent=Os01t0362100-01
Chr01	irgsp1_rep	CDS	14758533	14758637	.	-	2	Parent=Os01t0362100-01
Chr01	irgsp1_rep	CDS	14757994	14758100	.	-	2	Parent=Os01t0362100-01
Chr01	irgsp1_rep	CDS	14757378	14757499	.	-	0	Parent=Os01t0362100-01
Chr01	irgsp1_rep	CDS	14757158	14757266	.	-	1	Parent=Os01t0362100-01
Chr01	irgsp1_rep	CDS	14756890	14757023	.	-	0	Parent=Os01t0362100-01
Chr01	irgsp1_rep	CDS	14756420	14756789	.	-	1	Parent=Os01t0362100-01
Chr01	irgsp1_rep	CDS	14756123	14756236	.	-	0	Parent=Os01t0362100-01
Chr01	irgsp1_rep	CDS	14755691	14755776	.	-	0	Parent=Os01t0362100-01
Chr01	irgsp1_rep	CDS	14755137	14755437	.	-	1	Parent=Os01t0362100-01
Chr01	irgsp1_rep	three_prime_UTR	14754835	14755136	.	-	.	Parent=Os01t0362100-01
Chr01	irgsp1_rep	mRNA	14769271	14769881	.	+	.	ID=Os01t0362400-01;Name=Os01t0362400-01;Locus_id=Os01g0362400;Note=Conserved hypothetical protein.;Transcript_evidence=AK062630 (DDBJ%2C Best hit);ORF_evidence=B9EWQ8 (UniProt);NIAS_FLcDNA=001-105-C07;Expression=AK062630;TENOR=Os01t0362400-01;KEGG=Os01t0362400-01
Chr01	irgsp1_rep	five_prime_UTR	14769271	14769511	.	+	.	Parent=Os01t0362400-01
Chr01	irgsp1_rep	CDS	14769512	14769769	.	+	0	Parent=Os01t0362400-01
Chr01	irgsp1_rep	three_prime_UTR	14769770	14769881	.	+	.	Parent=Os01t0362400-01
Chr01	irgsp1_rep	mRNA	14770806	14771426	.	+	.	ID=Os01t0362533-01;Name=Os01t0362533-01;Locus_id=Os01g0362533;Note=Conserved hypothetical protein.;Transcript_evidence=AK241910 (DDBJ%2C Best hit);ORF_evidence=B8BFC4 (UniProt);NIAS_FLcDNA=J075055J08;TENOR=Os01t0362533-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	14770806	14771170	.	+	.	Parent=Os01t0362533-01
Chr01	irgsp1_rep	CDS	14771171	14771344	.	+	0	Parent=Os01t0362533-01
Chr01	irgsp1_rep	three_prime_UTR	14771345	14771426	.	+	.	Parent=Os01t0362533-01
Chr01	irgsp1_rep	mRNA	14783393	14785500	.	-	.	ID=Os01t0362800-01;Name=Os01t0362800-01;Locus_id=Os01g0362800;Note=Conserved hypothetical protein.;Transcript_evidence=AK071457 (DDBJ%2C Best hit);ORF_evidence=NP_001041752.1 (RefSeq);NIAS_FLcDNA=J023090J21;TENOR=Os01t0362800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	14785500	14785500	.	-	.	Parent=Os01t0362800-01
Chr01	irgsp1_rep	CDS	14785329	14785499	.	-	0	Parent=Os01t0362800-01
Chr01	irgsp1_rep	CDS	14784441	14784527	.	-	0	Parent=Os01t0362800-01
Chr01	irgsp1_rep	three_prime_UTR	14784279	14784440	.	-	.	Parent=Os01t0362800-01
Chr01	irgsp1_rep	three_prime_UTR	14783911	14784187	.	-	.	Parent=Os01t0362800-01
Chr01	irgsp1_rep	three_prime_UTR	14783393	14783772	.	-	.	Parent=Os01t0362800-01
Chr01	irgsp1_rep	mRNA	14789737	14790461	.	+	.	ID=Os01t0363000-01;Name=Os01t0363000-01;Locus_id=Os01g0363000;Note=Hypothetical protein.;Transcript_evidence=AK064749 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-120-E12;TENOR=Os01t0363000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	14789737	14789738	.	+	.	Parent=Os01t0363000-01
Chr01	irgsp1_rep	CDS	14789739	14790032	.	+	0	Parent=Os01t0363000-01
Chr01	irgsp1_rep	three_prime_UTR	14790033	14790461	.	+	.	Parent=Os01t0363000-01
Chr01	irgsp1_rep	mRNA	14793093	14797044	.	+	.	ID=Os01t0363300-01;Name=Os01t0363300-01;Locus_id=Os01g0363300;Note=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup domain containing protein.;Transcript_evidence=AK060356 (DDBJ%2C Best hit);ORF_evidence=C5XKI6 (UniProt);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup (IPR006459),Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);NIAS_FLcDNA=001-008-G11;Expression=AK060356;TENOR=Os01t0363300-01;KEGG=Os01t0363300-01
Chr01	irgsp1_rep	five_prime_UTR	14793093	14793266	.	+	.	Parent=Os01t0363300-01
Chr01	irgsp1_rep	CDS	14793267	14793583	.	+	0	Parent=Os01t0363300-01
Chr01	irgsp1_rep	CDS	14796604	14796934	.	+	1	Parent=Os01t0363300-01
Chr01	irgsp1_rep	three_prime_UTR	14796935	14797044	.	+	.	Parent=Os01t0363300-01
Chr01	irgsp1_rep	mRNA	14793151	14797054	.	+	.	ID=Os01t0363300-02;Name=Os01t0363300-02;Locus_id=Os01g0363300;Note=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup domain containing protein.;Transcript_evidence=AK059622 (DDBJ%2C Best hit);ORF_evidence=C5XKI6 (UniProt);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup (IPR006459),Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);NIAS_FLcDNA=001-030-H04;Expression=AK059622;TENOR=Os01t0363300-02;KEGG=Os01t0363300-02
Chr01	irgsp1_rep	five_prime_UTR	14793151	14793266	.	+	.	Parent=Os01t0363300-02
Chr01	irgsp1_rep	CDS	14793267	14793583	.	+	0	Parent=Os01t0363300-02
Chr01	irgsp1_rep	CDS	14796604	14796934	.	+	1	Parent=Os01t0363300-02
Chr01	irgsp1_rep	three_prime_UTR	14796935	14797054	.	+	.	Parent=Os01t0363300-02
Chr01	irgsp1_rep	mRNA	14798822	14801946	.	+	.	ID=Os01t0363500-01;Name=Os01t0363500-01;Locus_id=Os01g0363500;Note=Similar to predicted protein.;Transcript_evidence=AK071463 (DDBJ%2C Best hit);ORF_evidence=D8L9T8 (UniProt);NIAS_FLcDNA=J023098F15;TENOR=Os01t0363500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	14798822	14799828	.	+	.	Parent=Os01t0363500-01
Chr01	irgsp1_rep	five_prime_UTR	14799921	14800197	.	+	.	Parent=Os01t0363500-01
Chr01	irgsp1_rep	five_prime_UTR	14800350	14800415	.	+	.	Parent=Os01t0363500-01
Chr01	irgsp1_rep	five_prime_UTR	14800812	14800835	.	+	.	Parent=Os01t0363500-01
Chr01	irgsp1_rep	CDS	14800836	14801006	.	+	0	Parent=Os01t0363500-01
Chr01	irgsp1_rep	CDS	14801534	14801545	.	+	0	Parent=Os01t0363500-01
Chr01	irgsp1_rep	three_prime_UTR	14801546	14801946	.	+	.	Parent=Os01t0363500-01
Chr01	irgsp1_rep	mRNA	14798851	14801292	.	+	.	ID=Os01t0363500-02;Name=Os01t0363500-02;Locus_id=Os01g0363500;Note=Similar to PAP fibrillin domain containing protein%2Cexpressed.;Transcript_evidence=AK068183 (DDBJ%2C Best hit);ORF_evidence=D8L9T8 (UniProt);NIAS_FLcDNA=J013135J15;TENOR=Os01t0363500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	14798851	14799346	.	+	.	Parent=Os01t0363500-02
Chr01	irgsp1_rep	five_prime_UTR	14799829	14800197	.	+	.	Parent=Os01t0363500-02
Chr01	irgsp1_rep	five_prime_UTR	14800350	14800415	.	+	.	Parent=Os01t0363500-02
Chr01	irgsp1_rep	five_prime_UTR	14800506	14800555	.	+	.	Parent=Os01t0363500-02
Chr01	irgsp1_rep	five_prime_UTR	14800812	14800835	.	+	.	Parent=Os01t0363500-02
Chr01	irgsp1_rep	CDS	14800836	14801045	.	+	0	Parent=Os01t0363500-02
Chr01	irgsp1_rep	three_prime_UTR	14801046	14801292	.	+	.	Parent=Os01t0363500-02
Chr01	irgsp1_rep	mRNA	14798852	14803608	.	+	.	ID=Os01t0363500-03;Name=Os01t0363500-03;Locus_id=Os01g0363500;Note=Conserved hypothetical protein.;Transcript_evidence=AK120306 (DDBJ%2C Best hit);ORF_evidence=A2ZT39 (UniProt);NIAS_FLcDNA=J013052O08;TENOR=Os01t0363500-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	14798852	14799276	.	+	.	Parent=Os01t0363500-03
Chr01	irgsp1_rep	CDS	14799277	14799567	.	+	0	Parent=Os01t0363500-03
Chr01	irgsp1_rep	three_prime_UTR	14799568	14799828	.	+	.	Parent=Os01t0363500-03
Chr01	irgsp1_rep	three_prime_UTR	14799902	14800197	.	+	.	Parent=Os01t0363500-03
Chr01	irgsp1_rep	three_prime_UTR	14800350	14800555	.	+	.	Parent=Os01t0363500-03
Chr01	irgsp1_rep	three_prime_UTR	14800812	14801006	.	+	.	Parent=Os01t0363500-03
Chr01	irgsp1_rep	three_prime_UTR	14803001	14803608	.	+	.	Parent=Os01t0363500-03
Chr01	irgsp1_rep	mRNA	14798871	14801247	.	+	.	ID=Os01t0363500-04;Name=Os01t0363500-04;Locus_id=Os01g0363500;Note=Similar to PAP fibrillin domain containing protein%2Cexpressed.;Transcript_evidence=AK067388 (DDBJ%2C Best hit);ORF_evidence=D8L9T8 (UniProt);NIAS_FLcDNA=J013102L23;TENOR=Os01t0363500-04;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	14798871	14799828	.	+	.	Parent=Os01t0363500-04
Chr01	irgsp1_rep	five_prime_UTR	14799921	14800197	.	+	.	Parent=Os01t0363500-04
Chr01	irgsp1_rep	five_prime_UTR	14800350	14800555	.	+	.	Parent=Os01t0363500-04
Chr01	irgsp1_rep	five_prime_UTR	14800812	14800835	.	+	.	Parent=Os01t0363500-04
Chr01	irgsp1_rep	CDS	14800836	14801045	.	+	0	Parent=Os01t0363500-04
Chr01	irgsp1_rep	three_prime_UTR	14801046	14801247	.	+	.	Parent=Os01t0363500-04
Chr01	irgsp1_rep	mRNA	14798988	14801923	.	+	.	ID=Os01t0363500-05;Name=Os01t0363500-05;Locus_id=Os01g0363500;Note=Similar to predicted protein.;Transcript_evidence=AK061476 (DDBJ%2C Best hit);ORF_evidence=D8L9T8 (UniProt);NIAS_FLcDNA=006-308-F06;Expression=AK061476;TENOR=Os01t0363500-05;KEGG=Os01t0363500-05
Chr01	irgsp1_rep	five_prime_UTR	14798988	14799346	.	+	.	Parent=Os01t0363500-05
Chr01	irgsp1_rep	five_prime_UTR	14800350	14800555	.	+	.	Parent=Os01t0363500-05
Chr01	irgsp1_rep	five_prime_UTR	14800812	14800835	.	+	.	Parent=Os01t0363500-05
Chr01	irgsp1_rep	CDS	14800836	14801006	.	+	0	Parent=Os01t0363500-05
Chr01	irgsp1_rep	CDS	14801534	14801545	.	+	0	Parent=Os01t0363500-05
Chr01	irgsp1_rep	three_prime_UTR	14801546	14801923	.	+	.	Parent=Os01t0363500-05
Chr01	irgsp1_rep	mRNA	14802807	14804515	.	-	.	ID=Os01t0363600-01;Name=Os01t0363600-01;Locus_id=Os01g0363600;Note=Similar to hydroxyethylthiazole kinase family protein.;Transcript_evidence=AK063667 (DDBJ%2C Best hit);ORF_evidence=XP_002883497.1 (RefSeq);GO=Biological Process: thiamine biosynthetic process (GO:0009228),Molecular Function: hydroxyethylthiazole kinase activity (GO:0004417);InterPro=Hydroxyethylthiazole kinase (IPR000417);NIAS_FLcDNA=001-119-D01;TENOR=Os01t0363600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	14804356	14804515	.	-	.	Parent=Os01t0363600-01
Chr01	irgsp1_rep	CDS	14803925	14804355	.	-	0	Parent=Os01t0363600-01
Chr01	irgsp1_rep	CDS	14803051	14803189	.	-	1	Parent=Os01t0363600-01
Chr01	irgsp1_rep	three_prime_UTR	14802807	14803050	.	-	.	Parent=Os01t0363600-01
Chr01	irgsp1_rep	mRNA	14809676	14821941	.	+	.	ID=Os01t0363900-01;Name=Os01t0363900-01;Locus_id=Os01g0363900;RAP-DB Gene Symbol Synonym(s)=CRD1;RAP-DB Gene Name Synonym(s)=crown root defect 1;CGSNL Gene Symbol=WAK5;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 5;Oryzabase Gene Symbol Synonym(s)=OsWAK5;Note=Ortholog of Arabidopsis HASTY (HST) and human exportin-5 (XPO5)%2C Xpo1 domain protein%2C Regulation of miRNA accumulation and crown root development;Transcript_evidence=AK120610;ORF_evidence=Q5ZDB2;InterPro=Armadillo-type fold (IPR016024),Exportin-1/Importin-beta-like (IPR013598);NIAS_FLcDNA=J013151I23;Manual Curation=July 3%2C 2019;Literature_PMID=31257621;Oryzabase=6905;Expression=AK120610;TENOR=Os01t0363900-01;KEGG=Os01t0363900-01;Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737)
Chr01	irgsp1_rep	five_prime_UTR	14809676	14809962	.	+	.	Parent=Os01t0363900-01
Chr01	irgsp1_rep	CDS	14809963	14810070	.	+	0	Parent=Os01t0363900-01
Chr01	irgsp1_rep	CDS	14810780	14810881	.	+	0	Parent=Os01t0363900-01
Chr01	irgsp1_rep	CDS	14811778	14811921	.	+	0	Parent=Os01t0363900-01
Chr01	irgsp1_rep	CDS	14812027	14812107	.	+	0	Parent=Os01t0363900-01
Chr01	irgsp1_rep	CDS	14812199	14812268	.	+	0	Parent=Os01t0363900-01
Chr01	irgsp1_rep	CDS	14812388	14812458	.	+	2	Parent=Os01t0363900-01
Chr01	irgsp1_rep	CDS	14812548	14812711	.	+	0	Parent=Os01t0363900-01
Chr01	irgsp1_rep	CDS	14812790	14812861	.	+	1	Parent=Os01t0363900-01
Chr01	irgsp1_rep	CDS	14812958	14813195	.	+	1	Parent=Os01t0363900-01
Chr01	irgsp1_rep	CDS	14813570	14813632	.	+	0	Parent=Os01t0363900-01
Chr01	irgsp1_rep	CDS	14813715	14813990	.	+	0	Parent=Os01t0363900-01
Chr01	irgsp1_rep	CDS	14814979	14815092	.	+	0	Parent=Os01t0363900-01
Chr01	irgsp1_rep	CDS	14815220	14815346	.	+	0	Parent=Os01t0363900-01
Chr01	irgsp1_rep	CDS	14815436	14815605	.	+	2	Parent=Os01t0363900-01
Chr01	irgsp1_rep	CDS	14815864	14815962	.	+	0	Parent=Os01t0363900-01
Chr01	irgsp1_rep	CDS	14818862	14818965	.	+	0	Parent=Os01t0363900-01
Chr01	irgsp1_rep	CDS	14819073	14819370	.	+	1	Parent=Os01t0363900-01
Chr01	irgsp1_rep	CDS	14819498	14819730	.	+	0	Parent=Os01t0363900-01
Chr01	irgsp1_rep	CDS	14819967	14820467	.	+	1	Parent=Os01t0363900-01
Chr01	irgsp1_rep	CDS	14820543	14820837	.	+	1	Parent=Os01t0363900-01
Chr01	irgsp1_rep	CDS	14821110	14821293	.	+	0	Parent=Os01t0363900-01
Chr01	irgsp1_rep	CDS	14821703	14821785	.	+	2	Parent=Os01t0363900-01
Chr01	irgsp1_rep	three_prime_UTR	14821786	14821941	.	+	.	Parent=Os01t0363900-01
Chr01	irgsp1_rep	mRNA	14810002	14812108	.	-	.	ID=Os01t0363950-00;Name=Os01t0363950-00;Locus_id=Os01g0363950;Note=Hypothetical gene.;Transcript_evidence=BT086890 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0363950-00;KEGG=Os01t0363950-00
Chr01	irgsp1_rep	five_prime_UTR	14812012	14812108	.	-	.	Parent=Os01t0363950-00
Chr01	irgsp1_rep	five_prime_UTR	14811877	14811904	.	-	.	Parent=Os01t0363950-00
Chr01	irgsp1_rep	CDS	14811781	14811876	.	-	0	Parent=Os01t0363950-00
Chr01	irgsp1_rep	CDS	14810767	14810886	.	-	0	Parent=Os01t0363950-00
Chr01	irgsp1_rep	CDS	14810002	14810061	.	-	0	Parent=Os01t0363950-00
Chr01	irgsp1_rep	mRNA	14823243	14825669	.	-	.	ID=Os01t0364000-01;Name=Os01t0364000-01;Locus_id=Os01g0364000;Note=Hypothetical gene.;Transcript_evidence=AK073809 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033065C24;Expression=AK073809;TENOR=Os01t0364000-01;KEGG=Os01t0364000-01
Chr01	irgsp1_rep	five_prime_UTR	14824226	14825669	.	-	.	Parent=Os01t0364000-01
Chr01	irgsp1_rep	CDS	14824010	14824225	.	-	0	Parent=Os01t0364000-01
Chr01	irgsp1_rep	three_prime_UTR	14823243	14824009	.	-	.	Parent=Os01t0364000-01
Chr01	irgsp1_rep	mRNA	14823230	14825145	.	-	.	ID=Os01t0364000-02;Name=Os01t0364000-02;Locus_id=Os01g0364000;Note=Hypothetical gene.;Transcript_evidence=AK064031 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-125-B09;TENOR=Os01t0364000-02;KEGG=Os01t0364000-02
Chr01	irgsp1_rep	five_prime_UTR	14824226	14825145	.	-	.	Parent=Os01t0364000-02
Chr01	irgsp1_rep	CDS	14824010	14824225	.	-	0	Parent=Os01t0364000-02
Chr01	irgsp1_rep	three_prime_UTR	14823638	14824009	.	-	.	Parent=Os01t0364000-02
Chr01	irgsp1_rep	three_prime_UTR	14823230	14823530	.	-	.	Parent=Os01t0364000-02
Chr01	irgsp1_rep	mRNA	14825133	14828267	.	+	.	ID=Os01t0364100-00;Name=Os01t0364100-00;Locus_id=Os01g0364100;Note=Similar to OSIGBa0145M07.8 protein.;Transcript_evidence=AK365606 (DDBJ);ORF_evidence=Q01J49 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=EGF-type aspartate/asparagine hydroxylation site (IPR000152),Protein kinase%2C catalytic domain (IPR000719),Epidermal growth factor-like%2C type 3 (IPR000742),EGF-like calcium-binding (IPR001881),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EGF-like calcium-binding%2C conserved site (IPR018097);TENOR=Os01t0364100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	14825133	14825143	.	+	.	Parent=Os01t0364100-00
Chr01	irgsp1_rep	CDS	14825144	14825987	.	+	0	Parent=Os01t0364100-00
Chr01	irgsp1_rep	CDS	14826336	14826485	.	+	2	Parent=Os01t0364100-00
Chr01	irgsp1_rep	CDS	14827084	14828267	.	+	2	Parent=Os01t0364100-00
Chr01	irgsp1_rep	mRNA	14856256	14878542	.	-	.	ID=Os01t0364400-00;Name=Os01t0364400-00;Locus_id=Os01g0364400;CGSNL Gene Symbol=RLCK35;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 35;Oryzabase Gene Symbol Synonym(s)=OsRLCK35;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 35;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK364899 (DDBJ);ORF_evidence=NP_001172339.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),EGF-like calcium-binding (IPR001881),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EGF-like calcium-binding%2C conserved site (IPR018097),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18752;TENOR=Os01t0364400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	14877588	14878542	.	-	0	Parent=Os01t0364400-00
Chr01	irgsp1_rep	CDS	14857814	14858320	.	-	2	Parent=Os01t0364400-00
Chr01	irgsp1_rep	CDS	14857581	14857730	.	-	2	Parent=Os01t0364400-00
Chr01	irgsp1_rep	CDS	14856256	14857496	.	-	2	Parent=Os01t0364400-00
Chr01	irgsp1_rep	mRNA	14856428	14858011	.	+	.	ID=Os01t0364412-00;Name=Os01t0364412-00;Locus_id=Os01g0364412;Note=Non-protein coding transcript.;Transcript_evidence=FP093119 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0364412-00
Chr01	irgsp1_rep	exon	14856428	14856921	.	+	.	Parent=Os01t0364412-00
Chr01	irgsp1_rep	exon	14857761	14858011	.	+	.	Parent=Os01t0364412-00
Chr01	irgsp1_rep	mRNA	14879651	14880271	.	-	.	ID=Os01t0364450-00;Name=Os01t0364450-00;Locus_id=Os01g0364450;Note=Hypothetical gene.;Transcript_evidence=CT835519 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os01t0364450-00;KEGG=Os01t0364450-00
Chr01	irgsp1_rep	five_prime_UTR	14880270	14880271	.	-	.	Parent=Os01t0364450-00
Chr01	irgsp1_rep	CDS	14880030	14880269	.	-	0	Parent=Os01t0364450-00
Chr01	irgsp1_rep	three_prime_UTR	14879651	14880029	.	-	.	Parent=Os01t0364450-00
Chr01	irgsp1_rep	mRNA	14892931	14898978	.	+	.	ID=Os01t0364800-00;Name=Os01t0364800-00;Locus_id=Os01g0364800;CGSNL Gene Symbol=WAK7/8;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 7/8;Oryzabase Gene Symbol Synonym(s)=OsWAK7/8%2C OsWAK7%2C OsWAK8;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=BT033525 (DDBJ);ORF_evidence=NP_001043036.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=6908;TENOR=Os01t0364800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	14892931	14893845	.	+	.	Parent=Os01t0364800-00
Chr01	irgsp1_rep	five_prime_UTR	14897706	14897721	.	+	.	Parent=Os01t0364800-00
Chr01	irgsp1_rep	CDS	14897722	14898978	.	+	0	Parent=Os01t0364800-00
Chr01	irgsp1_rep	mRNA	14900942	14902670	.	+	.	ID=Os01t0364900-01;Name=Os01t0364900-01;Locus_id=Os01g0364900;Note=Conserved hypothetical protein.;Transcript_evidence=AK121145 (DDBJ%2C Best hit);ORF_evidence=Q5F1Y4 (UniProt);NIAS_FLcDNA=J023078A10;Expression=AK121145;TENOR=Os01t0364900-01;KEGG=Os01t0364900-01
Chr01	irgsp1_rep	five_prime_UTR	14900942	14901119	.	+	.	Parent=Os01t0364900-01
Chr01	irgsp1_rep	CDS	14901120	14901349	.	+	0	Parent=Os01t0364900-01
Chr01	irgsp1_rep	CDS	14902434	14902437	.	+	1	Parent=Os01t0364900-01
Chr01	irgsp1_rep	three_prime_UTR	14902438	14902670	.	+	.	Parent=Os01t0364900-01
Chr01	irgsp1_rep	mRNA	14903885	14915751	.	-	.	ID=Os01t0365000-00;Name=Os01t0365000-00;Locus_id=Os01g0365000;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK364899 (DDBJ);ORF_evidence=Q5F1Y3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),EGF-like calcium-binding (IPR001881),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EGF-like calcium-binding%2C conserved site (IPR018097),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os01t0365000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	14914820	14915751	.	-	0	Parent=Os01t0365000-00
Chr01	irgsp1_rep	CDS	14909288	14909736	.	-	1	Parent=Os01t0365000-00
Chr01	irgsp1_rep	CDS	14908983	14909144	.	-	2	Parent=Os01t0365000-00
Chr01	irgsp1_rep	CDS	14903885	14905125	.	-	2	Parent=Os01t0365000-00
Chr01	irgsp1_rep	mRNA	14924924	14927978	.	+	.	ID=Os01t0365300-01;Name=Os01t0365300-01;Locus_id=Os01g0365300;Note=Hypothetical conserved gene.;Transcript_evidence=AK242707 (DDBJ%2C Best hit);ORF_evidence=B9EWR3 (UniProt);InterPro=Glucoamylase%2C putatuve (IPR004314);NIAS_FLcDNA=J090040M15;TENOR=Os01t0365300-01;KEGG=Os01t0365300-01
Chr01	irgsp1_rep	five_prime_UTR	14924924	14924955	.	+	.	Parent=Os01t0365300-01
Chr01	irgsp1_rep	CDS	14924956	14925051	.	+	0	Parent=Os01t0365300-01
Chr01	irgsp1_rep	CDS	14925862	14925999	.	+	0	Parent=Os01t0365300-01
Chr01	irgsp1_rep	CDS	14926301	14926477	.	+	0	Parent=Os01t0365300-01
Chr01	irgsp1_rep	CDS	14926618	14926671	.	+	0	Parent=Os01t0365300-01
Chr01	irgsp1_rep	CDS	14926788	14926934	.	+	0	Parent=Os01t0365300-01
Chr01	irgsp1_rep	CDS	14927566	14927655	.	+	0	Parent=Os01t0365300-01
Chr01	irgsp1_rep	three_prime_UTR	14927656	14927978	.	+	.	Parent=Os01t0365300-01
Chr01	irgsp1_rep	mRNA	14955728	14959343	.	+	.	ID=Os01t0366100-01;Name=Os01t0366100-01;Locus_id=Os01g0366100;Note=Similar to cDNA clone:J023120H23%2C full insert sequence.;Transcript_evidence=AK067903 (DDBJ%2C Best hit);ORF_evidence=B7F737 (UniProt);NIAS_FLcDNA=J013124N06;TENOR=Os01t0366100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	14955728	14959014	.	+	.	Parent=Os01t0366100-01
Chr01	irgsp1_rep	CDS	14959015	14959173	.	+	0	Parent=Os01t0366100-01
Chr01	irgsp1_rep	three_prime_UTR	14959174	14959343	.	+	.	Parent=Os01t0366100-01
Chr01	irgsp1_rep	mRNA	14964573	14968307	.	+	.	ID=Os01t0366300-01;Name=Os01t0366300-01;Locus_id=Os01g0366300;Note=Similar to Receptor protein kinase.;Transcript_evidence=AK064115 (DDBJ%2C Best hit);ORF_evidence=Q33B66 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Gnk2-homologous domain (IPR002902),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=002-102-A04;Expression=AK064115;TENOR=Os01t0366300-01;KEGG=Os01t0366300-01
Chr01	irgsp1_rep	five_prime_UTR	14964573	14964594	.	+	.	Parent=Os01t0366300-01
Chr01	irgsp1_rep	CDS	14964595	14965471	.	+	0	Parent=Os01t0366300-01
Chr01	irgsp1_rep	CDS	14965560	14965661	.	+	2	Parent=Os01t0366300-01
Chr01	irgsp1_rep	CDS	14965777	14965961	.	+	2	Parent=Os01t0366300-01
Chr01	irgsp1_rep	CDS	14966565	14966775	.	+	0	Parent=Os01t0366300-01
Chr01	irgsp1_rep	CDS	14966883	14967120	.	+	2	Parent=Os01t0366300-01
Chr01	irgsp1_rep	CDS	14967229	14967379	.	+	1	Parent=Os01t0366300-01
Chr01	irgsp1_rep	CDS	14967492	14967800	.	+	0	Parent=Os01t0366300-01
Chr01	irgsp1_rep	three_prime_UTR	14967801	14968307	.	+	.	Parent=Os01t0366300-01
Chr01	irgsp1_rep	mRNA	14964599	14967775	.	-	.	ID=Os01t0366400-00;Name=Os01t0366400-00;Locus_id=Os01g0366400;Note=Hypothetical protein.;Transcript_evidence=tplb0040j01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0366400-00
Chr01	irgsp1_rep	five_prime_UTR	14967456	14967775	.	-	.	Parent=Os01t0366400-00
Chr01	irgsp1_rep	five_prime_UTR	14967229	14967335	.	-	.	Parent=Os01t0366400-00
Chr01	irgsp1_rep	five_prime_UTR	14966891	14967120	.	-	.	Parent=Os01t0366400-00
Chr01	irgsp1_rep	five_prime_UTR	14966545	14966782	.	-	.	Parent=Os01t0366400-00
Chr01	irgsp1_rep	five_prime_UTR	14965675	14965950	.	-	.	Parent=Os01t0366400-00
Chr01	irgsp1_rep	five_prime_UTR	14965269	14965363	.	-	.	Parent=Os01t0366400-00
Chr01	irgsp1_rep	CDS	14964918	14965268	.	-	0	Parent=Os01t0366400-00
Chr01	irgsp1_rep	three_prime_UTR	14964599	14964917	.	-	.	Parent=Os01t0366400-00
Chr01	irgsp1_rep	mRNA	14970988	14973090	.	-	.	ID=Os01t0366501-01;Name=Os01t0366501-01;Locus_id=Os01g0366501;Note=Hypothetical gene.;Transcript_evidence=AK288707 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090061M09;TENOR=Os01t0366501-01;KEGG=Os01t0366501-01
Chr01	irgsp1_rep	five_prime_UTR	14972018	14973090	.	-	.	Parent=Os01t0366501-01
Chr01	irgsp1_rep	CDS	14971724	14972017	.	-	0	Parent=Os01t0366501-01
Chr01	irgsp1_rep	three_prime_UTR	14970988	14971723	.	-	.	Parent=Os01t0366501-01
Chr01	irgsp1_rep	mRNA	14993204	14998103	.	-	.	ID=Os01t0367100-01;Name=Os01t0367100-01;Locus_id=Os01g0367100;RAP-DB Gene Symbol Synonym(s)=PHD1;RAP-DB Gene Name Synonym(s)=photoassimilate defective1%2C photoassimilate defective 1;CGSNL Gene Symbol=PHD1;CGSNL Gene Name=PHOTOASSIMILATE DEFECTIVE 1;Oryzabase Gene Symbol Synonym(s)=OsPHD1;Oryzabase Gene Name Synonym(s)=photoassimilate defective1%2C photoassimilate defective 1;Note=Chloroplast-localized UDP-glucose epimerase (UGE)%2C Galactolipid biosynthesis for chloroplast membranes%2C Photosynthetic capability and carbon assimilate homeostasis;Transcript_evidence=AK119785;ORF_evidence=Q5JJM6;InterPro=NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=002-173-F07;Manual Curation=June 9%2C 2016;Literature_PMID=21829379;Oryzabase=12409;TENOR=Os01t0367100-01
Chr01	irgsp1_rep	five_prime_UTR	14998016	14998103	.	-	.	Parent=Os01t0367100-01
Chr01	irgsp1_rep	CDS	14997838	14998015	.	-	0	Parent=Os01t0367100-01
Chr01	irgsp1_rep	CDS	14997564	14997679	.	-	2	Parent=Os01t0367100-01
Chr01	irgsp1_rep	CDS	14997122	14997294	.	-	0	Parent=Os01t0367100-01
Chr01	irgsp1_rep	CDS	14996578	14996671	.	-	1	Parent=Os01t0367100-01
Chr01	irgsp1_rep	CDS	14996262	14996373	.	-	0	Parent=Os01t0367100-01
Chr01	irgsp1_rep	CDS	14996061	14996149	.	-	2	Parent=Os01t0367100-01
Chr01	irgsp1_rep	CDS	14993879	14993964	.	-	0	Parent=Os01t0367100-01
Chr01	irgsp1_rep	CDS	14993689	14993753	.	-	1	Parent=Os01t0367100-01
Chr01	irgsp1_rep	CDS	14993490	14993599	.	-	2	Parent=Os01t0367100-01
Chr01	irgsp1_rep	three_prime_UTR	14993204	14993489	.	-	.	Parent=Os01t0367100-01
Chr01	irgsp1_rep	mRNA	14993340	14998049	.	-	.	ID=Os01t0367100-02;Name=Os01t0367100-02;Locus_id=Os01g0367100;CGSNL Gene Symbol=PHD1;CGSNL Gene Name=PHOTOASSIMILATE DEFECTIVE 1;Oryzabase Gene Symbol Synonym(s)=OsPHD1;Oryzabase Gene Name Synonym(s)=photoassimilate defective1%2C photoassimilate defective 1;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK101542 (DDBJ%2C Best hit),AK101540 (DDBJ%2C Best hit);ORF_evidence=NP_181441.3 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033048I01,J033048H01;Oryzabase=12409;Expression=AK101542;TENOR=Os01t0367100-02;KEGG=Os01t0367100-02
Chr01	irgsp1_rep	five_prime_UTR	14998016	14998049	.	-	.	Parent=Os01t0367100-02
Chr01	irgsp1_rep	CDS	14997838	14998015	.	-	0	Parent=Os01t0367100-02
Chr01	irgsp1_rep	CDS	14997564	14997679	.	-	2	Parent=Os01t0367100-02
Chr01	irgsp1_rep	CDS	14997122	14997294	.	-	0	Parent=Os01t0367100-02
Chr01	irgsp1_rep	CDS	14996578	14996671	.	-	1	Parent=Os01t0367100-02
Chr01	irgsp1_rep	CDS	14996262	14996373	.	-	0	Parent=Os01t0367100-02
Chr01	irgsp1_rep	CDS	14996061	14996149	.	-	2	Parent=Os01t0367100-02
Chr01	irgsp1_rep	CDS	14993879	14993964	.	-	0	Parent=Os01t0367100-02
Chr01	irgsp1_rep	CDS	14993689	14993753	.	-	1	Parent=Os01t0367100-02
Chr01	irgsp1_rep	CDS	14993490	14993599	.	-	2	Parent=Os01t0367100-02
Chr01	irgsp1_rep	three_prime_UTR	14993340	14993489	.	-	.	Parent=Os01t0367100-02
Chr01	irgsp1_rep	mRNA	14993204	14996325	.	-	.	ID=Os01t0367100-03;Name=Os01t0367100-03;Locus_id=Os01g0367100;CGSNL Gene Symbol=PHD1;CGSNL Gene Name=PHOTOASSIMILATE DEFECTIVE 1;Oryzabase Gene Symbol Synonym(s)=OsPHD1;Oryzabase Gene Name Synonym(s)=photoassimilate defective1%2C photoassimilate defective 1;Note=Similar to binding / catalytic.;Transcript_evidence=AK105060 (DDBJ%2C Best hit);ORF_evidence=NP_181441.3 (RefSeq);NIAS_FLcDNA=001-043-H05;Oryzabase=12409;Expression=AK105060;TENOR=Os01t0367100-03;KEGG=Os01t0367100-03
Chr01	irgsp1_rep	CDS	14996262	14996325	.	-	0	Parent=Os01t0367100-03
Chr01	irgsp1_rep	CDS	14996061	14996149	.	-	2	Parent=Os01t0367100-03
Chr01	irgsp1_rep	CDS	14993879	14993964	.	-	0	Parent=Os01t0367100-03
Chr01	irgsp1_rep	CDS	14993689	14993753	.	-	1	Parent=Os01t0367100-03
Chr01	irgsp1_rep	CDS	14993490	14993599	.	-	2	Parent=Os01t0367100-03
Chr01	irgsp1_rep	three_prime_UTR	14993204	14993489	.	-	.	Parent=Os01t0367100-03
Chr01	irgsp1_rep	mRNA	14993204	14998080	.	-	.	ID=Os01t0367100-04;Name=Os01t0367100-04;Locus_id=Os01g0367100;CGSNL Gene Symbol=PHD1;CGSNL Gene Name=PHOTOASSIMILATE DEFECTIVE 1;Oryzabase Gene Symbol Synonym(s)=OsPHD1;Oryzabase Gene Name Synonym(s)=photoassimilate defective1%2C photoassimilate defective 1;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK068655 (DDBJ%2C Best hit);ORF_evidence=NP_181441.3 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013158J05;Oryzabase=12409;TENOR=Os01t0367100-04
Chr01	irgsp1_rep	five_prime_UTR	14998016	14998080	.	-	.	Parent=Os01t0367100-04
Chr01	irgsp1_rep	CDS	14997838	14998015	.	-	0	Parent=Os01t0367100-04
Chr01	irgsp1_rep	CDS	14997564	14997679	.	-	2	Parent=Os01t0367100-04
Chr01	irgsp1_rep	CDS	14997122	14997294	.	-	0	Parent=Os01t0367100-04
Chr01	irgsp1_rep	CDS	14996578	14996671	.	-	1	Parent=Os01t0367100-04
Chr01	irgsp1_rep	CDS	14996262	14996373	.	-	0	Parent=Os01t0367100-04
Chr01	irgsp1_rep	CDS	14996061	14996149	.	-	2	Parent=Os01t0367100-04
Chr01	irgsp1_rep	CDS	14993879	14993964	.	-	0	Parent=Os01t0367100-04
Chr01	irgsp1_rep	CDS	14993689	14993753	.	-	1	Parent=Os01t0367100-04
Chr01	irgsp1_rep	CDS	14993490	14993599	.	-	2	Parent=Os01t0367100-04
Chr01	irgsp1_rep	three_prime_UTR	14993204	14993489	.	-	.	Parent=Os01t0367100-04
Chr01	irgsp1_rep	mRNA	14993500	14996713	.	+	.	ID=Os01t0367201-00;Name=Os01t0367201-00;Locus_id=Os01g0367201;Note=Non-protein coding transcript.;Transcript_evidence=BT016631 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0367201-00
Chr01	irgsp1_rep	exon	14993500	14993595	.	+	.	Parent=Os01t0367201-00
Chr01	irgsp1_rep	exon	14993680	14993760	.	+	.	Parent=Os01t0367201-00
Chr01	irgsp1_rep	exon	14993887	14993963	.	+	.	Parent=Os01t0367201-00
Chr01	irgsp1_rep	exon	14996060	14996372	.	+	.	Parent=Os01t0367201-00
Chr01	irgsp1_rep	exon	14996577	14996713	.	+	.	Parent=Os01t0367201-00
Chr01	irgsp1_rep	mRNA	15007028	15013275	.	-	.	ID=Os01t0367300-01;Name=Os01t0367300-01;Locus_id=Os01g0367300;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK101567 (DDBJ%2C Best hit);ORF_evidence=Q5F1W8 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033050F16;Expression=AK101567;TENOR=Os01t0367300-01;KEGG=Os01t0367300-01
Chr01	irgsp1_rep	five_prime_UTR	15012979	15013275	.	-	.	Parent=Os01t0367300-01
Chr01	irgsp1_rep	CDS	15009831	15011569	.	-	0	Parent=Os01t0367300-01
Chr01	irgsp1_rep	CDS	15009439	15009657	.	-	1	Parent=Os01t0367300-01
Chr01	irgsp1_rep	CDS	15007690	15007828	.	-	1	Parent=Os01t0367300-01
Chr01	irgsp1_rep	three_prime_UTR	15007028	15007689	.	-	.	Parent=Os01t0367300-01
Chr01	irgsp1_rep	mRNA	15007028	15010714	.	-	.	ID=Os01t0367300-02;Name=Os01t0367300-02;Locus_id=Os01g0367300;Note=Conserved hypothetical protein.;Transcript_evidence=AK073559 (DDBJ%2C Best hit);ORF_evidence=B8A878 (UniProt);NIAS_FLcDNA=J033043J16;TENOR=Os01t0367300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	15010425	15010714	.	-	.	Parent=Os01t0367300-02
Chr01	irgsp1_rep	CDS	15009912	15010424	.	-	0	Parent=Os01t0367300-02
Chr01	irgsp1_rep	three_prime_UTR	15009831	15009911	.	-	.	Parent=Os01t0367300-02
Chr01	irgsp1_rep	three_prime_UTR	15009439	15009657	.	-	.	Parent=Os01t0367300-02
Chr01	irgsp1_rep	three_prime_UTR	15007028	15007828	.	-	.	Parent=Os01t0367300-02
Chr01	irgsp1_rep	mRNA	15019814	15023931	.	-	.	ID=Os01t0367400-01;Name=Os01t0367400-01;Locus_id=Os01g0367400;Note=Conserved hypothetical protein.;Transcript_evidence=AK063804 (DDBJ%2C Best hit);ORF_evidence=B9EWR8 (UniProt);NIAS_FLcDNA=001-121-G01;Expression=AK063804;TENOR=Os01t0367400-01;KEGG=Os01t0367400-01
Chr01	irgsp1_rep	CDS	15023709	15023931	.	-	0	Parent=Os01t0367400-01
Chr01	irgsp1_rep	CDS	15023343	15023461	.	-	2	Parent=Os01t0367400-01
Chr01	irgsp1_rep	CDS	15022834	15023003	.	-	0	Parent=Os01t0367400-01
Chr01	irgsp1_rep	CDS	15021577	15021670	.	-	1	Parent=Os01t0367400-01
Chr01	irgsp1_rep	CDS	15020345	15020430	.	-	0	Parent=Os01t0367400-01
Chr01	irgsp1_rep	CDS	15020181	15020245	.	-	1	Parent=Os01t0367400-01
Chr01	irgsp1_rep	CDS	15019990	15020099	.	-	2	Parent=Os01t0367400-01
Chr01	irgsp1_rep	three_prime_UTR	15019814	15019989	.	-	.	Parent=Os01t0367400-01
Chr01	irgsp1_rep	mRNA	15019933	15023923	.	-	.	ID=Os01t0367400-02;Name=Os01t0367400-02;Locus_id=Os01g0367400;Note=Similar to cDNA clone:001-121-G01%2C full insert sequence.;Transcript_evidence=AK072605 (DDBJ%2C Best hit);ORF_evidence=B7E924 (UniProt);NIAS_FLcDNA=J023132J16;Expression=AK072605;TENOR=Os01t0367400-02;KEGG=Os01t0367400-02
Chr01	irgsp1_rep	five_prime_UTR	15023893	15023923	.	-	.	Parent=Os01t0367400-02
Chr01	irgsp1_rep	CDS	15023709	15023892	.	-	0	Parent=Os01t0367400-02
Chr01	irgsp1_rep	CDS	15023343	15023461	.	-	2	Parent=Os01t0367400-02
Chr01	irgsp1_rep	CDS	15022834	15023003	.	-	0	Parent=Os01t0367400-02
Chr01	irgsp1_rep	CDS	15021577	15021670	.	-	1	Parent=Os01t0367400-02
Chr01	irgsp1_rep	CDS	15021153	15021362	.	-	0	Parent=Os01t0367400-02
Chr01	irgsp1_rep	three_prime_UTR	15020345	15021152	.	-	.	Parent=Os01t0367400-02
Chr01	irgsp1_rep	three_prime_UTR	15020181	15020245	.	-	.	Parent=Os01t0367400-02
Chr01	irgsp1_rep	three_prime_UTR	15019933	15020099	.	-	.	Parent=Os01t0367400-02
Chr01	irgsp1_rep	mRNA	15019896	15021709	.	+	.	ID=Os01t0367450-00;Name=Os01t0367450-00;Locus_id=Os01g0367450;Note=Non-protein coding transcript.;Transcript_evidence=BT016631 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0367450-00
Chr01	irgsp1_rep	exon	15019896	15020095	.	+	.	Parent=Os01t0367450-00
Chr01	irgsp1_rep	exon	15020174	15020229	.	+	.	Parent=Os01t0367450-00
Chr01	irgsp1_rep	exon	15020328	15020429	.	+	.	Parent=Os01t0367450-00
Chr01	irgsp1_rep	exon	15021035	15021361	.	+	.	Parent=Os01t0367450-00
Chr01	irgsp1_rep	exon	15021576	15021709	.	+	.	Parent=Os01t0367450-00
Chr01	irgsp1_rep	mRNA	15027748	15032264	.	+	.	ID=Os01t0367500-00;Name=Os01t0367500-00;Locus_id=Os01g0367500;Note=Hypothetical conserved gene.;Transcript_evidence=AK103669 (DDBJ%2C Secondary hit);ORF_evidence=Q7FAF2 (UniProt);Expression=AK103669;TENOR=Os01t0367500-00;KEGG=Os01t0367500-00
Chr01	irgsp1_rep	five_prime_UTR	15027748	15027831	.	+	.	Parent=Os01t0367500-00
Chr01	irgsp1_rep	five_prime_UTR	15028382	15028478	.	+	.	Parent=Os01t0367500-00
Chr01	irgsp1_rep	five_prime_UTR	15028927	15029005	.	+	.	Parent=Os01t0367500-00
Chr01	irgsp1_rep	five_prime_UTR	15029456	15029457	.	+	.	Parent=Os01t0367500-00
Chr01	irgsp1_rep	CDS	15029458	15030015	.	+	0	Parent=Os01t0367500-00
Chr01	irgsp1_rep	three_prime_UTR	15030016	15030302	.	+	.	Parent=Os01t0367500-00
Chr01	irgsp1_rep	three_prime_UTR	15030324	15032264	.	+	.	Parent=Os01t0367500-00
Chr01	irgsp1_rep	mRNA	15059450	15067522	.	+	.	ID=Os01t0367700-01;Name=Os01t0367700-01;Locus_id=Os01g0367700;Oryzabase Gene Symbol Synonym(s)=Orysa%3BCKL5;Oryzabase Gene Name Synonym(s)=CDK-LIKE 5%2C cyclin-dependent kinase-like 5;Note=Similar to Cyclin-dependent protein kinase-like protein.;Transcript_evidence=AK064909 (DDBJ%2C Best hit);ORF_evidence=B6UFJ9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013000M03;Oryzabase=13303;Expression=AK064909;TENOR=Os01t0367700-01;KEGG=Os01t0367700-01 (EC:2.7.11.22)
Chr01	irgsp1_rep	five_prime_UTR	15059450	15059618	.	+	.	Parent=Os01t0367700-01
Chr01	irgsp1_rep	CDS	15059619	15059930	.	+	0	Parent=Os01t0367700-01
Chr01	irgsp1_rep	CDS	15060056	15060340	.	+	0	Parent=Os01t0367700-01
Chr01	irgsp1_rep	CDS	15060427	15060744	.	+	0	Parent=Os01t0367700-01
Chr01	irgsp1_rep	CDS	15063132	15063359	.	+	0	Parent=Os01t0367700-01
Chr01	irgsp1_rep	CDS	15064217	15064317	.	+	0	Parent=Os01t0367700-01
Chr01	irgsp1_rep	CDS	15065992	15066109	.	+	1	Parent=Os01t0367700-01
Chr01	irgsp1_rep	CDS	15066893	15067207	.	+	0	Parent=Os01t0367700-01
Chr01	irgsp1_rep	three_prime_UTR	15067208	15067522	.	+	.	Parent=Os01t0367700-01
Chr01	irgsp1_rep	mRNA	15075863	15083305	.	-	.	ID=Os01t0367900-01;Name=Os01t0367900-01;Locus_id=Os01g0367900;Note=Similar to Possible global transcription activator SNF2L1 (SWI/SNF related matrix associated actin dependent regulator of Chromatin subfamily A member 1).;Transcript_evidence=AK105265 (DDBJ%2C Best hit);ORF_evidence=XP_002315568.1 (RefSeq);GO=Biological Process: Chromatin remodeling (GO:0006338),Biological Process: ATP-dependent Chromatin remodeling (GO:0043044),Cellular Component: nucleus (GO:0005634),Cellular Component: Chromatin remodeling complex (GO:0016585),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: helicase activity (GO:0004386),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides (GO:0016818),Molecular Function: nucleosome binding (GO:0031491);InterPro=SNF2-related (IPR000330),SANT domain%2C DNA binding (IPR001005),Helicase%2C C-terminal (IPR001650),Homeodomain-like (IPR009057),DEAD-like helicase (IPR014001),ATPase%2C nucleosome remodelling ISWI%2C HAND domain (IPR015194),SLIDE (IPR015195),SANT%2C eukarya (IPR017884);NIAS_FLcDNA=001-115-D05;Expression=AK105265;TENOR=Os01t0367900-01;KEGG=Os01t0367900-01 (EC:3.6.1.-)
Chr01	irgsp1_rep	five_prime_UTR	15083214	15083305	.	-	.	Parent=Os01t0367900-01
Chr01	irgsp1_rep	CDS	15082878	15083213	.	-	0	Parent=Os01t0367900-01
Chr01	irgsp1_rep	CDS	15082421	15082543	.	-	0	Parent=Os01t0367900-01
Chr01	irgsp1_rep	CDS	15082177	15082280	.	-	0	Parent=Os01t0367900-01
Chr01	irgsp1_rep	CDS	15081543	15081655	.	-	1	Parent=Os01t0367900-01
Chr01	irgsp1_rep	CDS	15081326	15081423	.	-	2	Parent=Os01t0367900-01
Chr01	irgsp1_rep	CDS	15081050	15081229	.	-	0	Parent=Os01t0367900-01
Chr01	irgsp1_rep	CDS	15080742	15080963	.	-	0	Parent=Os01t0367900-01
Chr01	irgsp1_rep	CDS	15080476	15080610	.	-	0	Parent=Os01t0367900-01
Chr01	irgsp1_rep	CDS	15080102	15080384	.	-	0	Parent=Os01t0367900-01
Chr01	irgsp1_rep	CDS	15079945	15080018	.	-	2	Parent=Os01t0367900-01
Chr01	irgsp1_rep	CDS	15079519	15079739	.	-	0	Parent=Os01t0367900-01
Chr01	irgsp1_rep	CDS	15079346	15079433	.	-	1	Parent=Os01t0367900-01
Chr01	irgsp1_rep	CDS	15079169	15079262	.	-	0	Parent=Os01t0367900-01
Chr01	irgsp1_rep	CDS	15078897	15079085	.	-	2	Parent=Os01t0367900-01
Chr01	irgsp1_rep	CDS	15078798	15078829	.	-	2	Parent=Os01t0367900-01
Chr01	irgsp1_rep	CDS	15078642	15078718	.	-	0	Parent=Os01t0367900-01
Chr01	irgsp1_rep	CDS	15078479	15078568	.	-	1	Parent=Os01t0367900-01
Chr01	irgsp1_rep	CDS	15078306	15078375	.	-	1	Parent=Os01t0367900-01
Chr01	irgsp1_rep	CDS	15078086	15078128	.	-	0	Parent=Os01t0367900-01
Chr01	irgsp1_rep	CDS	15077935	15077993	.	-	2	Parent=Os01t0367900-01
Chr01	irgsp1_rep	CDS	15077676	15077841	.	-	0	Parent=Os01t0367900-01
Chr01	irgsp1_rep	CDS	15077348	15077526	.	-	2	Parent=Os01t0367900-01
Chr01	irgsp1_rep	CDS	15077052	15077267	.	-	0	Parent=Os01t0367900-01
Chr01	irgsp1_rep	CDS	15076341	15076451	.	-	0	Parent=Os01t0367900-01
Chr01	irgsp1_rep	CDS	15076196	15076216	.	-	0	Parent=Os01t0367900-01
Chr01	irgsp1_rep	three_prime_UTR	15075863	15076195	.	-	.	Parent=Os01t0367900-01
Chr01	irgsp1_rep	mRNA	15085497	15086919	.	+	.	ID=Os01t0368000-00;Name=Os01t0368000-00;Locus_id=Os01g0368000;Note=Similar to cDNA clone:J023132I08%2C full insert sequence.;Transcript_evidence=ab initio prediction;ORF_evidence=B7EKX6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: flavin-containing monooxygenase activity (GO:0004499),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=Flavin monooxygenase FMO (IPR000960),Flavin monooxygenase-like (IPR020946);TENOR=Os01t0368000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	15085497	15086257	.	+	0	Parent=Os01t0368000-00
Chr01	irgsp1_rep	CDS	15086304	15086919	.	+	1	Parent=Os01t0368000-00
Chr01	irgsp1_rep	mRNA	15099900	15112071	.	+	.	ID=Os01t0368500-00;Name=Os01t0368500-00;Locus_id=Os01g0368500;Note=Protein of unknown function DUF679 domain containing protein.;Transcript_evidence=AK374449 (DDBJ);ORF_evidence=A2ZT63 (UniProt);InterPro=Protein of unknown function DUF679 (IPR007770);TENOR=Os01t0368500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	15099900	15100338	.	+	0	Parent=Os01t0368500-00
Chr01	irgsp1_rep	CDS	15111554	15112071	.	+	2	Parent=Os01t0368500-00
Chr01	irgsp1_rep	mRNA	15113035	15113731	.	+	.	ID=Os01t0368600-00;Name=Os01t0368600-00;Locus_id=Os01g0368600;Note=Conserved hypothetical protein.;Transcript_evidence=EU945377 (DDBJ);ORF_evidence=Q5F1V4 (UniProt);TENOR=Os01t0368600-00
Chr01	irgsp1_rep	five_prime_UTR	15113035	15113158	.	+	.	Parent=Os01t0368600-00
Chr01	irgsp1_rep	CDS	15113159	15113731	.	+	0	Parent=Os01t0368600-00
Chr01	irgsp1_rep	mRNA	15118693	15119756	.	+	.	ID=Os01t0368700-01;Name=Os01t0368700-01;Locus_id=Os01g0368700;Note=Protein of unknown function DUF679 domain containing protein.;Transcript_evidence=AK067396 (DDBJ%2C Best hit);ORF_evidence=Q94I80 (UniProt);InterPro=Protein of unknown function DUF679 (IPR007770);NIAS_FLcDNA=J013106C18;TENOR=Os01t0368700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	15118693	15118747	.	+	.	Parent=Os01t0368700-01
Chr01	irgsp1_rep	CDS	15118748	15119425	.	+	0	Parent=Os01t0368700-01
Chr01	irgsp1_rep	three_prime_UTR	15119426	15119756	.	+	.	Parent=Os01t0368700-01
Chr01	irgsp1_rep	mRNA	15124631	15125396	.	+	.	ID=Os01t0368900-01;Name=Os01t0368900-01;Locus_id=Os01g0368900;RAP-DB Gene Symbol Synonym(s)=OsGrx_C7;CGSNL Gene Symbol=GRX4;CGSNL Gene Name=GLUTAREDOXIN 4;Oryzabase Gene Symbol Synonym(s)=OsGRX4%2C OsGrx_C7%2C Grx_C7;Oryzabase Gene Name Synonym(s)=glutaredoxin 4;Note=Glutaredoxin (Grx) family protein%2C Arsenic (As) stress response%2C Drought tolerance;Transcript_evidence=AK107858;ORF_evidence=Q7G8Y5;GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron transfer activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Thioredoxin-like superfamily (IPR036249),Glutaredoxin-like%2C plant II (IPR011905),Glutaredoxin (IPR002109);NIAS_FLcDNA=002-134-B04;Manual Curation=June 1%2C 2020;Literature_PMID=32464438,27313586;Oryzabase=13566;TENOR=Os01t0368900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	15124631	15124811	.	+	.	Parent=Os01t0368900-01
Chr01	irgsp1_rep	CDS	15124812	15125123	.	+	0	Parent=Os01t0368900-01
Chr01	irgsp1_rep	three_prime_UTR	15125124	15125396	.	+	.	Parent=Os01t0368900-01
Chr01	irgsp1_rep	mRNA	15130898	15139459	.	-	.	ID=Os01t0369000-01;Name=Os01t0369000-01;Locus_id=Os01g0369000;RAP-DB Gene Symbol Synonym(s)=OsCUL1-1;RAP-DB Gene Name Synonym(s)=Cullin 1-1;Oryzabase Gene Symbol Synonym(s)=OsCUL1%2C CUL1;Oryzabase Gene Name Synonym(s)=Cullin-1%2C Cullin 1;Note=Component of cullin-RING E3 ubiquitin ligase (CRL) complex%2C Salt/drought stress response;Transcript_evidence=AK064940;ORF_evidence=Q5ZC88;GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Molecular Function: ubiquitin protein ligase binding (GO:0031625),Cellular Component: cullin-RING ubiquitin ligase complex (GO:0031461);InterPro=Cullin repeat-like-containing domain superfamily (IPR016159),Cullin homology domain superfamily (IPR036317),Winged helix DNA-binding domain superfamily (IPR036390),Winged helix-like DNA-binding domain superfamily (IPR036388),Cullin%2C N-terminal (IPR001373),Cullin homology domain (IPR016158),Cullin protein%2C neddylation domain (IPR019559),Cullin%2C conserved site (IPR016157);NIAS_FLcDNA=J013000P07;Manual Curation=June 15%2C 2018;Literature_PMID=29892794;Oryzabase=21697;Expression=AK064940;TENOR=Os01t0369000-01;KEGG=Os01t0369000-01
Chr01	irgsp1_rep	five_prime_UTR	15139268	15139459	.	-	.	Parent=Os01t0369000-01
Chr01	irgsp1_rep	CDS	15139128	15139267	.	-	0	Parent=Os01t0369000-01
Chr01	irgsp1_rep	CDS	15138931	15139030	.	-	1	Parent=Os01t0369000-01
Chr01	irgsp1_rep	CDS	15135969	15136154	.	-	0	Parent=Os01t0369000-01
Chr01	irgsp1_rep	CDS	15135809	15135856	.	-	0	Parent=Os01t0369000-01
Chr01	irgsp1_rep	CDS	15135531	15135734	.	-	0	Parent=Os01t0369000-01
Chr01	irgsp1_rep	CDS	15135370	15135447	.	-	0	Parent=Os01t0369000-01
Chr01	irgsp1_rep	CDS	15135074	15135163	.	-	0	Parent=Os01t0369000-01
Chr01	irgsp1_rep	CDS	15134908	15134988	.	-	0	Parent=Os01t0369000-01
Chr01	irgsp1_rep	CDS	15134767	15134829	.	-	0	Parent=Os01t0369000-01
Chr01	irgsp1_rep	CDS	15134484	15134519	.	-	0	Parent=Os01t0369000-01
Chr01	irgsp1_rep	CDS	15134320	15134406	.	-	0	Parent=Os01t0369000-01
Chr01	irgsp1_rep	CDS	15134088	15134237	.	-	0	Parent=Os01t0369000-01
Chr01	irgsp1_rep	CDS	15133957	15134012	.	-	0	Parent=Os01t0369000-01
Chr01	irgsp1_rep	CDS	15133579	15133861	.	-	1	Parent=Os01t0369000-01
Chr01	irgsp1_rep	CDS	15133324	15133467	.	-	0	Parent=Os01t0369000-01
Chr01	irgsp1_rep	CDS	15133032	15133250	.	-	0	Parent=Os01t0369000-01
Chr01	irgsp1_rep	CDS	15131971	15132138	.	-	0	Parent=Os01t0369000-01
Chr01	irgsp1_rep	CDS	15131500	15131601	.	-	0	Parent=Os01t0369000-01
Chr01	irgsp1_rep	three_prime_UTR	15130898	15131499	.	-	.	Parent=Os01t0369000-01
Chr01	irgsp1_rep	mRNA	15130926	15139408	.	-	.	ID=Os01t0369000-02;Name=Os01t0369000-02;Locus_id=Os01g0369000;Oryzabase Gene Symbol Synonym(s)=OsCUL1%2C CUL1;Oryzabase Gene Name Synonym(s)=Cullin-1%2C Cullin 1;Note=Similar to Cullin-1.;Transcript_evidence=AK104340 (DDBJ%2C Best hit);ORF_evidence=C7SJ62 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Cellular Component: cullin-RING ubiquitin ligase complex (GO:0031461),Molecular Function: ubiquitin protein ligase binding (GO:0031625);InterPro=Cullin%2C N-terminal (IPR001373),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Cullin%2C conserved site (IPR016157),Cullin homology (IPR016158),Cullin repeat-like-containing domain (IPR016159),Cullin protein%2C neddylation domain (IPR019559);NIAS_FLcDNA=001-033-G02;Oryzabase=21697;Expression=AK104340;TENOR=Os01t0369000-02;KEGG=Os01t0369000-02
Chr01	irgsp1_rep	five_prime_UTR	15139268	15139408	.	-	.	Parent=Os01t0369000-02
Chr01	irgsp1_rep	CDS	15139128	15139267	.	-	0	Parent=Os01t0369000-02
Chr01	irgsp1_rep	CDS	15138931	15139030	.	-	1	Parent=Os01t0369000-02
Chr01	irgsp1_rep	CDS	15135969	15136154	.	-	0	Parent=Os01t0369000-02
Chr01	irgsp1_rep	CDS	15135809	15135856	.	-	0	Parent=Os01t0369000-02
Chr01	irgsp1_rep	CDS	15135531	15135734	.	-	0	Parent=Os01t0369000-02
Chr01	irgsp1_rep	CDS	15135370	15135447	.	-	0	Parent=Os01t0369000-02
Chr01	irgsp1_rep	CDS	15135074	15135163	.	-	0	Parent=Os01t0369000-02
Chr01	irgsp1_rep	CDS	15134908	15134988	.	-	0	Parent=Os01t0369000-02
Chr01	irgsp1_rep	CDS	15134767	15134829	.	-	0	Parent=Os01t0369000-02
Chr01	irgsp1_rep	CDS	15134484	15134519	.	-	0	Parent=Os01t0369000-02
Chr01	irgsp1_rep	CDS	15134320	15134406	.	-	0	Parent=Os01t0369000-02
Chr01	irgsp1_rep	CDS	15134088	15134237	.	-	0	Parent=Os01t0369000-02
Chr01	irgsp1_rep	CDS	15133957	15134012	.	-	0	Parent=Os01t0369000-02
Chr01	irgsp1_rep	CDS	15133579	15133861	.	-	1	Parent=Os01t0369000-02
Chr01	irgsp1_rep	CDS	15133324	15133467	.	-	0	Parent=Os01t0369000-02
Chr01	irgsp1_rep	CDS	15133032	15133250	.	-	0	Parent=Os01t0369000-02
Chr01	irgsp1_rep	CDS	15131971	15132138	.	-	0	Parent=Os01t0369000-02
Chr01	irgsp1_rep	CDS	15131500	15131601	.	-	0	Parent=Os01t0369000-02
Chr01	irgsp1_rep	three_prime_UTR	15130926	15131499	.	-	.	Parent=Os01t0369000-02
Chr01	irgsp1_rep	mRNA	15146089	15152275	.	+	.	ID=Os01t0369200-01;Name=Os01t0369200-01;Locus_id=Os01g0369200;RAP-DB Gene Symbol Synonym(s)=OsCUL1-3;RAP-DB Gene Name Synonym(s)=Cullin 1-3;CGSNL Gene Symbol=CUL1-3;CGSNL Gene Name=CULLIN 1-3;Oryzabase Gene Symbol Synonym(s)=OsCUL1-3;Oryzabase Gene Name Synonym(s)=Cullin 1-3;Note=Component of cullin-RING E3 ubiquitin ligase (CRL) complex%2C Salt/drought stress response%2C Cold stress response;Transcript_evidence=AK073477;ORF_evidence=Q93VL5;GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Molecular Function: ubiquitin protein ligase binding (GO:0031625);InterPro=Cullin repeat-like-containing domain superfamily (IPR016159),Cullin homology domain superfamily (IPR036317),Winged helix DNA-binding domain superfamily (IPR036390),Winged helix-like DNA-binding domain superfamily (IPR036388),Cullin%2C N-terminal (IPR001373),Cullin homology domain (IPR016158),Cullin protein%2C neddylation domain (IPR019559);NIAS_FLcDNA=J033045D14;Manual Curation=June 15%2C 2018;Literature_PMID=29892794;Oryzabase=22595;Expression=AK073477;TENOR=Os01t0369200-01;KEGG=Os01t0369200-01
Chr01	irgsp1_rep	five_prime_UTR	15146089	15146194	.	+	.	Parent=Os01t0369200-01
Chr01	irgsp1_rep	CDS	15146195	15146337	.	+	0	Parent=Os01t0369200-01
Chr01	irgsp1_rep	CDS	15146466	15146565	.	+	1	Parent=Os01t0369200-01
Chr01	irgsp1_rep	CDS	15147594	15147779	.	+	0	Parent=Os01t0369200-01
Chr01	irgsp1_rep	CDS	15147898	15147945	.	+	0	Parent=Os01t0369200-01
Chr01	irgsp1_rep	CDS	15148027	15148230	.	+	0	Parent=Os01t0369200-01
Chr01	irgsp1_rep	CDS	15148305	15148382	.	+	0	Parent=Os01t0369200-01
Chr01	irgsp1_rep	CDS	15148497	15148586	.	+	0	Parent=Os01t0369200-01
Chr01	irgsp1_rep	CDS	15148688	15148768	.	+	0	Parent=Os01t0369200-01
Chr01	irgsp1_rep	CDS	15148848	15148910	.	+	0	Parent=Os01t0369200-01
Chr01	irgsp1_rep	CDS	15149815	15149853	.	+	0	Parent=Os01t0369200-01
Chr01	irgsp1_rep	CDS	15149935	15150021	.	+	0	Parent=Os01t0369200-01
Chr01	irgsp1_rep	CDS	15150124	15150273	.	+	0	Parent=Os01t0369200-01
Chr01	irgsp1_rep	CDS	15150352	15150407	.	+	0	Parent=Os01t0369200-01
Chr01	irgsp1_rep	CDS	15150514	15150796	.	+	1	Parent=Os01t0369200-01
Chr01	irgsp1_rep	CDS	15151010	15151153	.	+	0	Parent=Os01t0369200-01
Chr01	irgsp1_rep	CDS	15151254	15151472	.	+	0	Parent=Os01t0369200-01
Chr01	irgsp1_rep	CDS	15151549	15151716	.	+	0	Parent=Os01t0369200-01
Chr01	irgsp1_rep	CDS	15151889	15151990	.	+	0	Parent=Os01t0369200-01
Chr01	irgsp1_rep	three_prime_UTR	15151991	15152275	.	+	.	Parent=Os01t0369200-01
Chr01	irgsp1_rep	mRNA	15153154	15157185	.	-	.	ID=Os01t0369300-01;Name=Os01t0369300-01;Locus_id=Os01g0369300;CGSNL Gene Symbol=HAK3;CGSNL Gene Name=HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 3;Oryzabase Gene Symbol Synonym(s)=OsHAK3;Oryzabase Gene Name Synonym(s)=High-affinity Potassium(K+) Transporter 3%2C Probable potassium transporter 3;Note=Potassium uptake protein%2C kup domain containing protein.;Transcript_evidence=AK109760 (DDBJ%2C Best hit);ORF_evidence=B6U7Z6 (UniProt);GO=Biological Process: potassium ion transmembrane transport (GO:0071805),Cellular Component: membrane (GO:0016020),Molecular Function: potassium ion transmembrane transporter activity (GO:0015079);InterPro=K+ potassium transporter (IPR003855);NIAS_FLcDNA=002-146-G08;Oryzabase=8657;Expression=AK109760;TENOR=Os01t0369300-01;KEGG=Os01t0369300-01
Chr01	irgsp1_rep	five_prime_UTR	15157076	15157185	.	-	.	Parent=Os01t0369300-01
Chr01	irgsp1_rep	CDS	15157001	15157075	.	-	0	Parent=Os01t0369300-01
Chr01	irgsp1_rep	CDS	15154794	15155292	.	-	0	Parent=Os01t0369300-01
Chr01	irgsp1_rep	CDS	15154382	15154694	.	-	2	Parent=Os01t0369300-01
Chr01	irgsp1_rep	CDS	15154247	15154298	.	-	1	Parent=Os01t0369300-01
Chr01	irgsp1_rep	CDS	15153987	15154104	.	-	0	Parent=Os01t0369300-01
Chr01	irgsp1_rep	CDS	15153154	15153884	.	-	2	Parent=Os01t0369300-01
Chr01	irgsp1_rep	mRNA	15152302	15154886	.	-	.	ID=Os01t0369300-02;Name=Os01t0369300-02;Locus_id=Os01g0369300;CGSNL Gene Symbol=HAK3;CGSNL Gene Name=HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 3;Oryzabase Gene Symbol Synonym(s)=OsHAK3;Oryzabase Gene Name Synonym(s)=High-affinity Potassium(K+) Transporter 3%2C Probable potassium transporter 3;Note=Potassium transporter 1 (AtPOT1) (AtKUP1) (AtKT1). Splice isoform 2.;Transcript_evidence=AK100340 (DDBJ%2C Best hit);ORF_evidence=Q1T721 (UniProt);GO=Biological Process: potassium ion transmembrane transport (GO:0071805),Cellular Component: membrane (GO:0016020),Molecular Function: potassium ion transmembrane transporter activity (GO:0015079);InterPro=K+ potassium transporter (IPR003855);NIAS_FLcDNA=J023081N10;Oryzabase=8657;Expression=AK100340;TENOR=Os01t0369300-02;KEGG=Os01t0369300-02
Chr01	irgsp1_rep	five_prime_UTR	15154885	15154886	.	-	.	Parent=Os01t0369300-02
Chr01	irgsp1_rep	CDS	15154794	15154884	.	-	0	Parent=Os01t0369300-02
Chr01	irgsp1_rep	CDS	15154382	15154694	.	-	2	Parent=Os01t0369300-02
Chr01	irgsp1_rep	CDS	15154247	15154298	.	-	1	Parent=Os01t0369300-02
Chr01	irgsp1_rep	CDS	15153987	15154104	.	-	0	Parent=Os01t0369300-02
Chr01	irgsp1_rep	CDS	15152515	15153884	.	-	2	Parent=Os01t0369300-02
Chr01	irgsp1_rep	three_prime_UTR	15152302	15152514	.	-	.	Parent=Os01t0369300-02
Chr01	irgsp1_rep	mRNA	15152517	15153876	.	+	.	ID=Os01t0369366-00;Name=Os01t0369366-00;Locus_id=Os01g0369366;Note=Hypothetical protein.;Transcript_evidence=EU967027 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0369366-00
Chr01	irgsp1_rep	five_prime_UTR	15152517	15152517	.	+	.	Parent=Os01t0369366-00
Chr01	irgsp1_rep	CDS	15152518	15152811	.	+	0	Parent=Os01t0369366-00
Chr01	irgsp1_rep	CDS	15152926	15153876	.	+	0	Parent=Os01t0369366-00
Chr01	irgsp1_rep	mRNA	15160442	15161605	.	+	.	ID=Os01t0369500-01;Name=Os01t0369500-01;Locus_id=Os01g0369500;Note=C2 calcium-dependent membrane targeting domain containing protein.;Transcript_evidence=AK100805 (DDBJ%2C Best hit);ORF_evidence=Q94I72 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973);NIAS_FLcDNA=J023121K24;TENOR=Os01t0369500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	15160442	15160443	.	+	.	Parent=Os01t0369500-01
Chr01	irgsp1_rep	CDS	15160444	15161442	.	+	0	Parent=Os01t0369500-01
Chr01	irgsp1_rep	three_prime_UTR	15161443	15161605	.	+	.	Parent=Os01t0369500-01
Chr01	irgsp1_rep	mRNA	15161786	15165714	.	+	.	ID=Os01t0369600-01;Name=Os01t0369600-01;Locus_id=Os01g0369600;Note=Conserved hypothetical protein.;Transcript_evidence=AK068386 (DDBJ%2C Best hit);ORF_evidence=B9F362 (UniProt);NIAS_FLcDNA=J013145G03;TENOR=Os01t0369600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	15161786	15162368	.	+	.	Parent=Os01t0369600-01
Chr01	irgsp1_rep	five_prime_UTR	15163079	15163203	.	+	.	Parent=Os01t0369600-01
Chr01	irgsp1_rep	CDS	15163204	15163293	.	+	0	Parent=Os01t0369600-01
Chr01	irgsp1_rep	three_prime_UTR	15163294	15164670	.	+	.	Parent=Os01t0369600-01
Chr01	irgsp1_rep	three_prime_UTR	15165100	15165202	.	+	.	Parent=Os01t0369600-01
Chr01	irgsp1_rep	three_prime_UTR	15165276	15165314	.	+	.	Parent=Os01t0369600-01
Chr01	irgsp1_rep	three_prime_UTR	15165518	15165714	.	+	.	Parent=Os01t0369600-01
Chr01	irgsp1_rep	mRNA	15170486	15171859	.	-	.	ID=Os01t0369700-01;Name=Os01t0369700-01;Locus_id=Os01g0369700;CGSNL Gene Symbol=GSTF5;CGSNL Gene Name=PHI GLUTATHIONE S-TRANSFERASE 5;Oryzabase Gene Symbol Synonym(s)=OsGSTF5%2C OsGST F5;Oryzabase Gene Name Synonym(s)=Glutathione transferase I%2C Phi-class glutathione S-transferase F5%2C phi class GST F5;Note=Similar to Glutathione S-transferase GST 8 (EC 2.5.1.18).;Transcript_evidence=AK101436 (DDBJ%2C Best hit),AK063796 (DDBJ%2C Best hit);ORF_evidence=Q8GTB9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=J033039A11,001-121-F03;Oryzabase=9507;Expression=AK101436;TENOR=Os01t0369700-01;KEGG=Os01t0369700-01 (EC:2.5.1.18)
Chr01	irgsp1_rep	five_prime_UTR	15171801	15171859	.	-	.	Parent=Os01t0369700-01
Chr01	irgsp1_rep	CDS	15171606	15171800	.	-	0	Parent=Os01t0369700-01
Chr01	irgsp1_rep	CDS	15171264	15171312	.	-	0	Parent=Os01t0369700-01
Chr01	irgsp1_rep	CDS	15170568	15171046	.	-	2	Parent=Os01t0369700-01
Chr01	irgsp1_rep	three_prime_UTR	15170486	15170567	.	-	.	Parent=Os01t0369700-01
Chr01	irgsp1_rep	mRNA	15170441	15171818	.	-	.	ID=Os01t0369700-03;Name=Os01t0369700-03;Locus_id=Os01g0369700;CGSNL Gene Symbol=GSTF5;CGSNL Gene Name=PHI GLUTATHIONE S-TRANSFERASE 5;Oryzabase Gene Symbol Synonym(s)=OsGSTF5%2C OsGST F5;Oryzabase Gene Name Synonym(s)=Glutathione transferase I%2C Phi-class glutathione S-transferase F5%2C phi class GST F5;Note=Similar to Glutathione S-transferase GST 8 (EC 2.5.1.18).;Transcript_evidence=AK120046 (DDBJ%2C Best hit);ORF_evidence=Q8GTB9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=002-188-H01;Oryzabase=9507;Expression=AK120046;TENOR=Os01t0369700-03;KEGG=Os01t0369700-03 (EC:2.5.1.18)
Chr01	irgsp1_rep	five_prime_UTR	15171801	15171818	.	-	.	Parent=Os01t0369700-03
Chr01	irgsp1_rep	CDS	15171606	15171800	.	-	0	Parent=Os01t0369700-03
Chr01	irgsp1_rep	CDS	15171264	15171312	.	-	0	Parent=Os01t0369700-03
Chr01	irgsp1_rep	CDS	15170568	15171046	.	-	2	Parent=Os01t0369700-03
Chr01	irgsp1_rep	three_prime_UTR	15170441	15170567	.	-	.	Parent=Os01t0369700-03
Chr01	irgsp1_rep	mRNA	15170605	15171053	.	+	.	ID=Os01t0369800-00;Name=Os01t0369800-00;Locus_id=Os01g0369800;Note=Hypothetical protein.;Transcript_evidence=EU947713 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0369800-00
Chr01	irgsp1_rep	five_prime_UTR	15170605	15170606	.	+	.	Parent=Os01t0369800-00
Chr01	irgsp1_rep	CDS	15170607	15171050	.	+	0	Parent=Os01t0369800-00
Chr01	irgsp1_rep	three_prime_UTR	15171051	15171053	.	+	.	Parent=Os01t0369800-00
Chr01	irgsp1_rep	mRNA	15185168	15188301	.	-	.	ID=Os01t0369900-01;Name=Os01t0369900-01;Locus_id=Os01g0369900;CGSNL Gene Symbol=OPR10;CGSNL Gene Name=12-OXOPHYTODIENOATE REDUCTASE 10;Oryzabase Gene Symbol Synonym(s)=OsOPR10%2C OsOPR12%2C OsOPR01-1;Oryzabase Gene Name Synonym(s)=12-oxo-phytodienoic acid reductase 10;Note=Similar to 12-oxo-phytodienoic acid reductase6.;Transcript_evidence=AK100034 (DDBJ%2C Best hit);ORF_evidence=NP_001105832.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=NADH:flavin oxidoreductase/NADH oxidase%2C N-terminal (IPR001155),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J013149N02;Oryzabase=8764;TENOR=Os01t0369900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	15188107	15188301	.	-	.	Parent=Os01t0369900-01
Chr01	irgsp1_rep	CDS	15188045	15188106	.	-	0	Parent=Os01t0369900-01
Chr01	irgsp1_rep	CDS	15187445	15187928	.	-	1	Parent=Os01t0369900-01
Chr01	irgsp1_rep	three_prime_UTR	15186238	15187444	.	-	.	Parent=Os01t0369900-01
Chr01	irgsp1_rep	three_prime_UTR	15185168	15185927	.	-	.	Parent=Os01t0369900-01
Chr01	irgsp1_rep	mRNA	15185336	15188091	.	+	.	ID=Os01t0369950-00;Name=Os01t0369950-00;Locus_id=Os01g0369950;Note=Hypothetical gene.;Transcript_evidence=EU947281 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0369950-00;KEGG=Os01t0369950-00
Chr01	irgsp1_rep	five_prime_UTR	15185336	15185337	.	+	.	Parent=Os01t0369950-00
Chr01	irgsp1_rep	CDS	15185338	15185943	.	+	0	Parent=Os01t0369950-00
Chr01	irgsp1_rep	three_prime_UTR	15185944	15185951	.	+	.	Parent=Os01t0369950-00
Chr01	irgsp1_rep	three_prime_UTR	15186262	15186387	.	+	.	Parent=Os01t0369950-00
Chr01	irgsp1_rep	three_prime_UTR	15187655	15187936	.	+	.	Parent=Os01t0369950-00
Chr01	irgsp1_rep	three_prime_UTR	15188052	15188091	.	+	.	Parent=Os01t0369950-00
Chr01	irgsp1_rep	mRNA	15192860	15195695	.	-	.	ID=Os01t0370000-01;Name=Os01t0370000-01;Locus_id=Os01g0370000;CGSNL Gene Symbol=OPR9;CGSNL Gene Name=12-OXOPHYTODIENOATE REDUCTASE 9;Oryzabase Gene Symbol Synonym(s)=OsOPR9%2C OsOPR01-2%2C OPR2;Oryzabase Gene Name Synonym(s)=12-oxo-phytodienoic acid reductase 9;Note=NADH:flavin oxidoreductase/NADH oxidase%2C N-terminal domain containing protein.;Transcript_evidence=AK121554 (DDBJ%2C Best hit);ORF_evidence=Q5ZC83 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=NADH:flavin oxidoreductase/NADH oxidase%2C N-terminal (IPR001155),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J033033G12;Oryzabase=8763;TENOR=Os01t0370000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	15195622	15195695	.	-	.	Parent=Os01t0370000-01
Chr01	irgsp1_rep	CDS	15195563	15195621	.	-	0	Parent=Os01t0370000-01
Chr01	irgsp1_rep	CDS	15194045	15194547	.	-	1	Parent=Os01t0370000-01
Chr01	irgsp1_rep	CDS	15193765	15193905	.	-	2	Parent=Os01t0370000-01
Chr01	irgsp1_rep	CDS	15193156	15193691	.	-	2	Parent=Os01t0370000-01
Chr01	irgsp1_rep	three_prime_UTR	15192860	15193155	.	-	.	Parent=Os01t0370000-01
Chr01	irgsp1_rep	mRNA	15216825	15217959	.	-	.	ID=Os01t0370200-00;Name=Os01t0370200-00;Locus_id=Os01g0370200;CGSNL Gene Symbol=GSTF7;CGSNL Gene Name=PHI GLUTATHIONE S-TRANSFERASE 7;Oryzabase Gene Symbol Synonym(s)=OsGSTF7;Note=Similar to Glutathione-S-transferase 19E50.;Transcript_evidence=CT836598 (DDBJ%2C Best hit);ORF_evidence=Q8VWW3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);Oryzabase=9509;TENOR=Os01t0370200-00;KEGG=Os01t0370200-00
Chr01	irgsp1_rep	five_prime_UTR	15217953	15217959	.	-	.	Parent=Os01t0370200-00
Chr01	irgsp1_rep	CDS	15217803	15217952	.	-	0	Parent=Os01t0370200-00
Chr01	irgsp1_rep	CDS	15217654	15217702	.	-	0	Parent=Os01t0370200-00
Chr01	irgsp1_rep	CDS	15217057	15217514	.	-	2	Parent=Os01t0370200-00
Chr01	irgsp1_rep	three_prime_UTR	15216825	15217056	.	-	.	Parent=Os01t0370200-00
Chr01	irgsp1_rep	mRNA	15217032	15217959	.	+	.	ID=Os01t0370400-00;Name=Os01t0370400-00;Locus_id=Os01g0370400;Note=Hypothetical protein.;Transcript_evidence=BT009482 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0370400-00
Chr01	irgsp1_rep	five_prime_UTR	15217032	15217134	.	+	.	Parent=Os01t0370400-00
Chr01	irgsp1_rep	CDS	15217135	15217491	.	+	0	Parent=Os01t0370400-00
Chr01	irgsp1_rep	CDS	15217748	15217959	.	+	0	Parent=Os01t0370400-00
Chr01	irgsp1_rep	mRNA	15234445	15234693	.	+	.	ID=Os01t0370600-00;Name=Os01t0370600-00;Locus_id=Os01g0370600;Note=Similar to Glutathione transferase.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8VWW3 (UniProt);InterPro=Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);TENOR=Os01t0370600-00
Chr01	irgsp1_rep	CDS	15234445	15234693	.	+	0	Parent=Os01t0370600-00
Chr01	irgsp1_rep	mRNA	15258673	15260303	.	+	.	ID=Os01t0370750-01;Name=Os01t0370750-01;Locus_id=Os01g0370750;Note=Non-protein coding transcript.;Transcript_evidence=AK241527 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065171E09;TENOR=Os01t0370750-01
Chr01	irgsp1_rep	exon	15258673	15259994	.	+	.	Parent=Os01t0370750-01
Chr01	irgsp1_rep	exon	15260077	15260303	.	+	.	Parent=Os01t0370750-01
Chr01	irgsp1_rep	mRNA	15258848	15260219	.	-	.	ID=Os01t0370900-00;Name=Os01t0370900-00;Locus_id=Os01g0370900;CGSNL Gene Symbol=GSTF8;CGSNL Gene Name=PHI GLUTATHIONE S-TRANSFERASE 8;Oryzabase Gene Symbol Synonym(s)=OsGSTF8;Note=Similar to Glutathione transferase.;Transcript_evidence=AK369124 (DDBJ);ORF_evidence=Q8VWW3 (UniProt);InterPro=Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);Oryzabase=9510;TENOR=Os01t0370900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	15260214	15260219	.	-	.	Parent=Os01t0370900-00
Chr01	irgsp1_rep	CDS	15260077	15260213	.	-	0	Parent=Os01t0370900-00
Chr01	irgsp1_rep	CDS	15259912	15259994	.	-	1	Parent=Os01t0370900-00
Chr01	irgsp1_rep	CDS	15258848	15259374	.	-	2	Parent=Os01t0370900-00
Chr01	irgsp1_rep	mRNA	15281170	15283073	.	-	.	ID=Os01t0371200-01;Name=Os01t0371200-01;Locus_id=Os01g0371200;CGSNL Gene Symbol=GSTF1;CGSNL Gene Name=PHI GLUTATHIONE S-TRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=OsGSTF1%2C RGSI;Note=Similar to Glutathione-S-transferase 19E50.;Transcript_evidence=AK058900 (DDBJ%2C Best hit);ORF_evidence=Q8VWW3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=001-008-A07;Oryzabase=9503;Expression=AK058900;TENOR=Os01t0371200-01;KEGG=Os01t0371200-01
Chr01	irgsp1_rep	five_prime_UTR	15282954	15283073	.	-	.	Parent=Os01t0371200-01
Chr01	irgsp1_rep	CDS	15282804	15282953	.	-	0	Parent=Os01t0371200-01
Chr01	irgsp1_rep	CDS	15282652	15282700	.	-	0	Parent=Os01t0371200-01
Chr01	irgsp1_rep	CDS	15281362	15281822	.	-	2	Parent=Os01t0371200-01
Chr01	irgsp1_rep	three_prime_UTR	15281170	15281361	.	-	.	Parent=Os01t0371200-01
Chr01	irgsp1_rep	mRNA	15281380	15282975	.	+	.	ID=Os01t0371300-00;Name=Os01t0371300-00;Locus_id=Os01g0371300;Note=Hypothetical protein.;Transcript_evidence=BT009482 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0371300-00
Chr01	irgsp1_rep	five_prime_UTR	15281380	15281644	.	+	.	Parent=Os01t0371300-00
Chr01	irgsp1_rep	CDS	15281645	15281838	.	+	0	Parent=Os01t0371300-00
Chr01	irgsp1_rep	CDS	15282768	15282975	.	+	1	Parent=Os01t0371300-00
Chr01	irgsp1_rep	mRNA	15289214	15291315	.	+	.	ID=Os01t0371400-00;Name=Os01t0371400-00;Locus_id=Os01g0371400;CGSNL Gene Symbol=GSTF9;CGSNL Gene Name=PHI GLUTATHIONE S-TRANSFERASE 9;Oryzabase Gene Symbol Synonym(s)=OsGSTF9;Note=Similar to Glutathione s-transferase gstf2.;Transcript_evidence=ab initio prediction;ORF_evidence=A6N0E3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);Oryzabase=9511;TENOR=Os01t0371400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	15289214	15289363	.	+	0	Parent=Os01t0371400-00
Chr01	irgsp1_rep	CDS	15290155	15290203	.	+	0	Parent=Os01t0371400-00
Chr01	irgsp1_rep	CDS	15290915	15291315	.	+	2	Parent=Os01t0371400-00
Chr01	irgsp1_rep	mRNA	15291669	15294409	.	+	.	ID=Os01t0371500-01;Name=Os01t0371500-01;Locus_id=Os01g0371500;CGSNL Gene Symbol=GSTF10;CGSNL Gene Name=PHI GLUTATHIONE S-TRANSFERASE 10;Oryzabase Gene Symbol Synonym(s)=OsGSTF10;Note=Similar to Glutathione-S-transferase 19E50.;Transcript_evidence=AK062937 (DDBJ%2C Best hit);ORF_evidence=A6N0E3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=001-109-B04;Oryzabase=9512;Expression=AK062937;TENOR=Os01t0371500-01;KEGG=Os01t0371500-01
Chr01	irgsp1_rep	five_prime_UTR	15291669	15291736	.	+	.	Parent=Os01t0371500-01
Chr01	irgsp1_rep	CDS	15291737	15291886	.	+	0	Parent=Os01t0371500-01
Chr01	irgsp1_rep	CDS	15292679	15292727	.	+	0	Parent=Os01t0371500-01
Chr01	irgsp1_rep	CDS	15293758	15294209	.	+	2	Parent=Os01t0371500-01
Chr01	irgsp1_rep	three_prime_UTR	15294210	15294409	.	+	.	Parent=Os01t0371500-01
Chr01	irgsp1_rep	mRNA	15328868	15332889	.	-	.	ID=Os01t0372100-01;Name=Os01t0372100-01;Locus_id=Os01g0372100;Note=Hypothetical gene.;Transcript_evidence=AK242320 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J075196D04;TENOR=Os01t0372100-01
Chr01	irgsp1_rep	five_prime_UTR	15332539	15332889	.	-	.	Parent=Os01t0372100-01
Chr01	irgsp1_rep	CDS	15332445	15332538	.	-	0	Parent=Os01t0372100-01
Chr01	irgsp1_rep	CDS	15332254	15332367	.	-	2	Parent=Os01t0372100-01
Chr01	irgsp1_rep	CDS	15330536	15330567	.	-	2	Parent=Os01t0372100-01
Chr01	irgsp1_rep	three_prime_UTR	15330511	15330535	.	-	.	Parent=Os01t0372100-01
Chr01	irgsp1_rep	three_prime_UTR	15328868	15329164	.	-	.	Parent=Os01t0372100-01
Chr01	irgsp1_rep	mRNA	15338118	15341480	.	+	.	ID=Os01t0372350-01;Name=Os01t0372350-01;Locus_id=Os01g0372350;Note=Conserved hypothetical protein.;Transcript_evidence=AK242114 (DDBJ%2C Best hit);ORF_evidence=B9EWT4 (UniProt);NIAS_FLcDNA=J075146F24;TENOR=Os01t0372350-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	15338118	15338469	.	+	.	Parent=Os01t0372350-01
Chr01	irgsp1_rep	five_prime_UTR	15339849	15340013	.	+	.	Parent=Os01t0372350-01
Chr01	irgsp1_rep	five_prime_UTR	15340237	15340626	.	+	.	Parent=Os01t0372350-01
Chr01	irgsp1_rep	CDS	15340627	15340899	.	+	0	Parent=Os01t0372350-01
Chr01	irgsp1_rep	three_prime_UTR	15340900	15341480	.	+	.	Parent=Os01t0372350-01
Chr01	irgsp1_rep	mRNA	15344380	15345409	.	+	.	ID=Os01t0372400-01;Name=Os01t0372400-01;Locus_id=Os01g0372400;CGSNL Gene Symbol=GSTF13;CGSNL Gene Name=PHI GLUTATHIONE S-TRANSFERASE 13;Oryzabase Gene Symbol Synonym(s)=OsGSTF13;Note=Glutathione S-transferase%2C C-terminal-like domain containing protein.;Transcript_evidence=AK108314 (DDBJ%2C Best hit);ORF_evidence=Q9ZS18 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=002-141-G07;Oryzabase=9515;Expression=AK108314;TENOR=Os01t0372400-01;KEGG=Os01t0372400-01
Chr01	irgsp1_rep	five_prime_UTR	15344380	15344465	.	+	.	Parent=Os01t0372400-01
Chr01	irgsp1_rep	CDS	15344466	15344615	.	+	0	Parent=Os01t0372400-01
Chr01	irgsp1_rep	CDS	15344728	15344776	.	+	0	Parent=Os01t0372400-01
Chr01	irgsp1_rep	CDS	15344874	15345340	.	+	2	Parent=Os01t0372400-01
Chr01	irgsp1_rep	three_prime_UTR	15345341	15345409	.	+	.	Parent=Os01t0372400-01
Chr01	irgsp1_rep	mRNA	15344449	15345323	.	-	.	ID=Os01t0372450-00;Name=Os01t0372450-00;Locus_id=Os01g0372450;Note=Hypothetical protein.;Transcript_evidence=BT009482 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0372450-00
Chr01	irgsp1_rep	five_prime_UTR	15345323	15345323	.	-	.	Parent=Os01t0372450-00
Chr01	irgsp1_rep	CDS	15344920	15345322	.	-	0	Parent=Os01t0372450-00
Chr01	irgsp1_rep	CDS	15344683	15344699	.	-	2	Parent=Os01t0372450-00
Chr01	irgsp1_rep	three_prime_UTR	15344449	15344682	.	-	.	Parent=Os01t0372450-00
Chr01	irgsp1_rep	mRNA	15346352	15347941	.	-	.	ID=Os01t0372500-00;Name=Os01t0372500-00;Locus_id=Os01g0372500;CGSNL Gene Symbol=ANS;CGSNL Gene Name=ANTHOCYANIDIN SYNTHASE;Oryzabase Gene Symbol Synonym(s)=ANS%2C OsANS1%2C ANS1%2C LDOX;Oryzabase Gene Name Synonym(s)=anthocyanidin synthase%2C leucoanthocyanidin dioxygenase;Note=Similar to Leucoanthocyanidin dioxygenase (EC 1.14.11.19) (LDOX) (Leucocyanidin oxygenase) (Leucoanthocyanidin hydroxylase).;Transcript_evidence=Y07955 (DDBJ%2C Best hit);ORF_evidence=NP_001106074.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Isopenicillin N synthase (IPR002283),Oxoglutarate/iron-dependent oxygenase (IPR005123);Oryzabase=8280;Expression=Y07955;TENOR=Os01t0372500-00;KEGG=Os01t0372500-00 (EC:1.14.11.19)
Chr01	irgsp1_rep	five_prime_UTR	15347890	15347941	.	-	.	Parent=Os01t0372500-00
Chr01	irgsp1_rep	CDS	15346762	15347889	.	-	0	Parent=Os01t0372500-00
Chr01	irgsp1_rep	three_prime_UTR	15346352	15346761	.	-	.	Parent=Os01t0372500-00
Chr01	irgsp1_rep	mRNA	15356785	15360682	.	-	.	ID=Os01t0372700-01;Name=Os01t0372700-01;Locus_id=Os01g0372700;Note=Similar to Asparaginyl-tRNA synthetase%2C cytoplasmic 1 (EC 6.1.1.22) (Asparagine-- tRNA ligase 1) (AsnRS 1).;Transcript_evidence=AK101893 (DDBJ%2C Best hit);ORF_evidence=B6SVS6 (UniProt);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: asparaginyl-tRNA aminoacylation (GO:0006421),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: asparagine-tRNA ligase activity (GO:0004816),Molecular Function: ATP binding (GO:0005524);InterPro=WHEP-TRS (IPR000738),Aspartyl/Asparaginyl-tRNA synthetase%2C class IIb (IPR002312),Aminoacyl-tRNA synthetase%2C class II (D/K/N) (IPR004364),Nucleic acid binding%2C OB-fold%2C tRNA/helicase-type (IPR004365),Asparaginyl-tRNA synthetase%2C class IIb (IPR004522),Aminoacyl-tRNA synthetase%2C class II (IPR006195),S15/NS1%2C RNA-binding (IPR009068),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),Aminoacyl-tRNA synthetase%2C class II (D/K/N)-like (IPR018150);NIAS_FLcDNA=J033070O21;Expression=AK101893;TENOR=Os01t0372700-01;KEGG=Os01t0372700-01 (EC:6.1.1.22)
Chr01	irgsp1_rep	five_prime_UTR	15360533	15360682	.	-	.	Parent=Os01t0372700-01
Chr01	irgsp1_rep	CDS	15360071	15360532	.	-	0	Parent=Os01t0372700-01
Chr01	irgsp1_rep	CDS	15358653	15359246	.	-	0	Parent=Os01t0372700-01
Chr01	irgsp1_rep	CDS	15358269	15358519	.	-	0	Parent=Os01t0372700-01
Chr01	irgsp1_rep	CDS	15358052	15358181	.	-	1	Parent=Os01t0372700-01
Chr01	irgsp1_rep	CDS	15357704	15357762	.	-	0	Parent=Os01t0372700-01
Chr01	irgsp1_rep	CDS	15357068	15357251	.	-	1	Parent=Os01t0372700-01
Chr01	irgsp1_rep	three_prime_UTR	15356785	15357067	.	-	.	Parent=Os01t0372700-01
Chr01	irgsp1_rep	mRNA	15357072	15360597	.	+	.	ID=Os01t0372866-00;Name=Os01t0372866-00;Locus_id=Os01g0372866;Note=Hypothetical gene.;Transcript_evidence=BT018795 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0372866-00
Chr01	irgsp1_rep	five_prime_UTR	15357072	15357241	.	+	.	Parent=Os01t0372866-00
Chr01	irgsp1_rep	five_prime_UTR	15357694	15357760	.	+	.	Parent=Os01t0372866-00
Chr01	irgsp1_rep	five_prime_UTR	15358050	15358172	.	+	.	Parent=Os01t0372866-00
Chr01	irgsp1_rep	five_prime_UTR	15358265	15358529	.	+	.	Parent=Os01t0372866-00
Chr01	irgsp1_rep	five_prime_UTR	15358664	15359246	.	+	.	Parent=Os01t0372866-00
Chr01	irgsp1_rep	five_prime_UTR	15360071	15360091	.	+	.	Parent=Os01t0372866-00
Chr01	irgsp1_rep	CDS	15360092	15360597	.	+	0	Parent=Os01t0372866-00
Chr01	irgsp1_rep	mRNA	15382985	15385243	.	-	.	ID=Os01t0373200-00;Name=Os01t0373200-00;Locus_id=Os01g0373200;Note=Hypothetical conserved gene.;Transcript_evidence=AK240988 (DDBJ%2C Secondary hit);ORF_evidence=B9FSI3 (UniProt);TENOR=Os01t0373200-00;KEGG=Os01t0373200-00
Chr01	irgsp1_rep	five_prime_UTR	15385178	15385243	.	-	.	Parent=Os01t0373200-00
Chr01	irgsp1_rep	CDS	15385131	15385177	.	-	0	Parent=Os01t0373200-00
Chr01	irgsp1_rep	CDS	15384920	15385026	.	-	1	Parent=Os01t0373200-00
Chr01	irgsp1_rep	CDS	15384677	15384805	.	-	2	Parent=Os01t0373200-00
Chr01	irgsp1_rep	CDS	15383116	15383198	.	-	2	Parent=Os01t0373200-00
Chr01	irgsp1_rep	three_prime_UTR	15382985	15383115	.	-	.	Parent=Os01t0373200-00
Chr01	irgsp1_rep	mRNA	15389760	15392040	.	-	.	ID=Os01t0373400-01;Name=Os01t0373400-01;Locus_id=Os01g0373400;CGSNL Gene Symbol=MSL02;CGSNL Gene Name=MYB/SANT-LIKE 2;Oryzabase Gene Symbol Synonym(s)=OsMSL02%2C MSL2;Oryzabase Gene Name Synonym(s)=Myb/SANT-LIKE 2;Note=Homeodomain-like containing protein.;Transcript_evidence=AK110973 (DDBJ%2C Best hit);ORF_evidence=A2ZE44 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Homeodomain-related (IPR012287),MYB-like (IPR017877);NIAS_FLcDNA=002-174-C01;Oryzabase=22945;Expression=AK110973;TENOR=Os01t0373400-01;KEGG=Os01t0373400-01
Chr01	irgsp1_rep	five_prime_UTR	15391832	15392040	.	-	.	Parent=Os01t0373400-01
Chr01	irgsp1_rep	CDS	15391506	15391831	.	-	0	Parent=Os01t0373400-01
Chr01	irgsp1_rep	CDS	15390219	15391023	.	-	1	Parent=Os01t0373400-01
Chr01	irgsp1_rep	three_prime_UTR	15389760	15390218	.	-	.	Parent=Os01t0373400-01
Chr01	irgsp1_rep	mRNA	15393438	15395768	.	+	.	ID=Os01t0373500-01;Name=Os01t0373500-01;Locus_id=Os01g0373500;Note=Protein of unknown function DUF594 domain containing protein.;Transcript_evidence=AK107175 (DDBJ%2C Best hit);ORF_evidence=A2WQ42 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);NIAS_FLcDNA=002-124-G08;TENOR=Os01t0373500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	15393438	15393479	.	+	.	Parent=Os01t0373500-01
Chr01	irgsp1_rep	CDS	15393480	15395627	.	+	0	Parent=Os01t0373500-01
Chr01	irgsp1_rep	three_prime_UTR	15395628	15395768	.	+	.	Parent=Os01t0373500-01
Chr01	irgsp1_rep	mRNA	15400221	15400863	.	-	.	ID=Os01t0373700-01;Name=Os01t0373700-01;Locus_id=Os01g0373700;Note=Conserved hypothetical protein.;Transcript_evidence=AK107857 (DDBJ%2C Best hit);ORF_evidence=NP_001043070.1 (RefSeq);NIAS_FLcDNA=002-134-B03;Expression=AK107857;TENOR=Os01t0373700-01;KEGG=Os01t0373700-01
Chr01	irgsp1_rep	five_prime_UTR	15400731	15400863	.	-	.	Parent=Os01t0373700-01
Chr01	irgsp1_rep	CDS	15400542	15400730	.	-	0	Parent=Os01t0373700-01
Chr01	irgsp1_rep	three_prime_UTR	15400221	15400541	.	-	.	Parent=Os01t0373700-01
Chr01	irgsp1_rep	mRNA	15403221	15403783	.	-	.	ID=Os01t0373800-01;Name=Os01t0373800-01;Locus_id=Os01g0373800;Note=Non-protein coding transcript.;Transcript_evidence=AK107432 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-128-A08;TENOR=Os01t0373800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	exon	15403221	15403783	.	-	.	Parent=Os01t0373800-01
Chr01	irgsp1_rep	mRNA	15410788	15412081	.	+	.	ID=Os01t0374000-01;Name=Os01t0374000-01;Locus_id=Os01g0374000;CGSNL Gene Symbol=GSTF12;CGSNL Gene Name=PHI GLUTATHIONE S-TRANSFERASE 12;Oryzabase Gene Symbol Synonym(s)=OsGSTF12%2C OsEnS-7;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 7;Note=Similar to Glutathione S-transferase I (EC 2.5.1.18) (GST-I) (GST-29) (GST class- phi).;Transcript_evidence=AK242230 (DDBJ%2C Best hit);ORF_evidence=A6N0E3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=J075176C11;Oryzabase=9514;TENOR=Os01t0374000-01;KEGG=Os01t0374000-01 (EC:2.5.1.18)
Chr01	irgsp1_rep	five_prime_UTR	15410788	15410837	.	+	.	Parent=Os01t0374000-01
Chr01	irgsp1_rep	CDS	15410838	15410984	.	+	0	Parent=Os01t0374000-01
Chr01	irgsp1_rep	CDS	15411129	15411177	.	+	0	Parent=Os01t0374000-01
Chr01	irgsp1_rep	CDS	15411484	15411932	.	+	2	Parent=Os01t0374000-01
Chr01	irgsp1_rep	three_prime_UTR	15411933	15412081	.	+	.	Parent=Os01t0374000-01
Chr01	irgsp1_rep	mRNA	15411483	15411923	.	-	.	ID=Os01t0374100-00;Name=Os01t0374100-00;Locus_id=Os01g0374100;Note=Non-protein coding transcript.;Transcript_evidence=BT009482 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0374100-00
Chr01	irgsp1_rep	exon	15411483	15411923	.	-	.	Parent=Os01t0374100-00
Chr01	irgsp1_rep	mRNA	15418911	15421118	.	-	.	ID=Os01t0374200-00;Name=Os01t0374200-00;Locus_id=Os01g0374200;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=EU946893 (DDBJ);ORF_evidence=NP_001043072.2 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os01t0374200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	15418911	15421118	.	-	0	Parent=Os01t0374200-00
Chr01	irgsp1_rep	mRNA	15440625	15441473	.	-	.	ID=Os01t0374501-01;Name=Os01t0374501-01;Locus_id=Os01g0374501;Note=Similar to mTERF family protein.;Transcript_evidence=AK242609 (DDBJ%2C Best hit);ORF_evidence=NP_001151570.1 (RefSeq);InterPro=Mitochodrial transcription termination factor-related (IPR003690);NIAS_FLcDNA=J090015J12;TENOR=Os01t0374501-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	15441437	15441473	.	-	.	Parent=Os01t0374501-01
Chr01	irgsp1_rep	CDS	15441017	15441436	.	-	0	Parent=Os01t0374501-01
Chr01	irgsp1_rep	three_prime_UTR	15440625	15441016	.	-	.	Parent=Os01t0374501-01
Chr01	irgsp1_rep	mRNA	15445662	15447633	.	+	.	ID=Os01t0374600-00;Name=Os01t0374600-00;Locus_id=Os01g0374600;CGSNL Gene Symbol=LAC1;CGSNL Gene Name=LACCASE 1;Oryzabase Gene Symbol Synonym(s)=OsLAC1;Oryzabase Gene Name Synonym(s)=laccase 1;Note=Similar to Laccase-21.;Transcript_evidence=AK331516 (DDBJ);ORF_evidence=Q2QZ80 (UniProt);GO=Biological Process: lignin catabolic process (GO:0046274),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: apoplast (GO:0048046),Molecular Function: copper ion binding (GO:0005507),Molecular Function: laccase activity (GO:0008471),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Multicopper oxidase%2C type 1 (IPR001117),Multicopper oxidase%2C copper-binding site (IPR002355),Cupredoxin (IPR008972),Multicopper oxidase%2C type 2 (IPR011706),Multicopper oxidase%2C type 3 (IPR011707),Laccase (IPR017761);Oryzabase=18573;TENOR=Os01t0374600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	15445662	15445825	.	+	0	Parent=Os01t0374600-00
Chr01	irgsp1_rep	CDS	15445930	15446200	.	+	1	Parent=Os01t0374600-00
Chr01	irgsp1_rep	CDS	15446324	15447407	.	+	0	Parent=Os01t0374600-00
Chr01	irgsp1_rep	CDS	15447503	15447633	.	+	2	Parent=Os01t0374600-00
Chr01	irgsp1_rep	mRNA	15453686	15457657	.	+	.	ID=Os01t0374900-01;Name=Os01t0374900-01;Locus_id=Os01g0374900;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK067148 (DDBJ%2C Best hit);ORF_evidence=B8A897 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J013095L18;Expression=AK067148;TENOR=Os01t0374900-01;KEGG=Os01t0374900-01
Chr01	irgsp1_rep	five_prime_UTR	15453686	15453729	.	+	.	Parent=Os01t0374900-01
Chr01	irgsp1_rep	CDS	15453730	15454025	.	+	0	Parent=Os01t0374900-01
Chr01	irgsp1_rep	CDS	15455781	15456276	.	+	1	Parent=Os01t0374900-01
Chr01	irgsp1_rep	CDS	15457192	15457341	.	+	0	Parent=Os01t0374900-01
Chr01	irgsp1_rep	three_prime_UTR	15457342	15457657	.	+	.	Parent=Os01t0374900-01
Chr01	irgsp1_rep	mRNA	15462065	15465895	.	-	.	ID=Os01t0375000-01;Name=Os01t0375000-01;Locus_id=Os01g0375000;Oryzabase Gene Symbol Synonym(s)=Os_F0781;Note=GTP1/OBG domain containing protein.;Transcript_evidence=AK103410 (DDBJ%2C Best hit);ORF_evidence=B6UF30 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=GTP-binding domain%2C HSR1-related (IPR002917),GTP1/OBG (IPR006073),GNL3L/Grn1 putative GTPase (IPR014813),GTP-binding protein%2C orthogonal bundle domain (IPR023179);NIAS_FLcDNA=J033128E17;Oryzabase=17470;Expression=AK103410;TENOR=Os01t0375000-01;KEGG=Os01t0375000-01
Chr01	irgsp1_rep	five_prime_UTR	15465808	15465895	.	-	.	Parent=Os01t0375000-01
Chr01	irgsp1_rep	CDS	15465544	15465807	.	-	0	Parent=Os01t0375000-01
Chr01	irgsp1_rep	CDS	15464893	15465031	.	-	0	Parent=Os01t0375000-01
Chr01	irgsp1_rep	CDS	15464632	15464805	.	-	2	Parent=Os01t0375000-01
Chr01	irgsp1_rep	CDS	15464329	15464543	.	-	2	Parent=Os01t0375000-01
Chr01	irgsp1_rep	CDS	15463593	15463857	.	-	0	Parent=Os01t0375000-01
Chr01	irgsp1_rep	CDS	15463219	15463398	.	-	2	Parent=Os01t0375000-01
Chr01	irgsp1_rep	CDS	15462926	15463137	.	-	2	Parent=Os01t0375000-01
Chr01	irgsp1_rep	CDS	15462442	15462768	.	-	0	Parent=Os01t0375000-01
Chr01	irgsp1_rep	three_prime_UTR	15462065	15462441	.	-	.	Parent=Os01t0375000-01
Chr01	irgsp1_rep	mRNA	15474284	15478322	.	-	.	ID=Os01t0375100-01;Name=Os01t0375100-01;Locus_id=Os01g0375100;Oryzabase Gene Symbol Synonym(s)=OsDjC6;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C6;Note=Similar to DnAJ-like protein slr0093.;Transcript_evidence=AK102596 (DDBJ%2C Best hit);ORF_evidence=A2ZTB1 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Domain of unknown function DUF3444 (IPR024593);NIAS_FLcDNA=J033098J19;Oryzabase=12163;Expression=AK102596;TENOR=Os01t0375100-01;KEGG=Os01t0375100-01
Chr01	irgsp1_rep	five_prime_UTR	15478137	15478322	.	-	.	Parent=Os01t0375100-01
Chr01	irgsp1_rep	five_prime_UTR	15477967	15478061	.	-	.	Parent=Os01t0375100-01
Chr01	irgsp1_rep	five_prime_UTR	15477716	15477860	.	-	.	Parent=Os01t0375100-01
Chr01	irgsp1_rep	CDS	15474689	15477715	.	-	0	Parent=Os01t0375100-01
Chr01	irgsp1_rep	three_prime_UTR	15474284	15474688	.	-	.	Parent=Os01t0375100-01
Chr01	irgsp1_rep	mRNA	15479968	15493289	.	+	.	ID=Os01t0375200-01;Name=Os01t0375200-01;Locus_id=Os01g0375200;Oryzabase Gene Symbol Synonym(s)=DHQDT/SDH%2C OsDHQDT/SDH%2C OsDHQDT%2C OsSDH%2C DHQDT%2C SDH%2C DHQ/SDH-1;Oryzabase Gene Name Synonym(s)=3-dehydroquinate dehydratase/shikimate dehydrogenase;Note=Similar to shikimate biosynthesis protein aroDE.;Transcript_evidence=AK121501 (DDBJ%2C Best hit);ORF_evidence=B6UCV5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: 3-dehydroquinate dehydratase activity (GO:0003855),Molecular Function: shikimate 3-dehydrogenase (NADP+) activity (GO:0004764);InterPro=Dehydroquinase class I (IPR001381),Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase (IPR006151),Shikimate dehydrogenase substrate binding%2C N-terminal (IPR013708),Aldolase-type TIM barrel (IPR013785),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033022B16;Oryzabase=16770;TENOR=Os01t0375200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	15479968	15480157	.	+	.	Parent=Os01t0375200-01
Chr01	irgsp1_rep	CDS	15480158	15480345	.	+	0	Parent=Os01t0375200-01
Chr01	irgsp1_rep	CDS	15485337	15485442	.	+	1	Parent=Os01t0375200-01
Chr01	irgsp1_rep	CDS	15486610	15486828	.	+	0	Parent=Os01t0375200-01
Chr01	irgsp1_rep	CDS	15487847	15488193	.	+	0	Parent=Os01t0375200-01
Chr01	irgsp1_rep	CDS	15489386	15489449	.	+	1	Parent=Os01t0375200-01
Chr01	irgsp1_rep	CDS	15489540	15489645	.	+	0	Parent=Os01t0375200-01
Chr01	irgsp1_rep	CDS	15489730	15489870	.	+	2	Parent=Os01t0375200-01
Chr01	irgsp1_rep	CDS	15491640	15491788	.	+	2	Parent=Os01t0375200-01
Chr01	irgsp1_rep	CDS	15491963	15492128	.	+	0	Parent=Os01t0375200-01
Chr01	irgsp1_rep	CDS	15492237	15492280	.	+	2	Parent=Os01t0375200-01
Chr01	irgsp1_rep	three_prime_UTR	15492281	15492283	.	+	.	Parent=Os01t0375200-01
Chr01	irgsp1_rep	three_prime_UTR	15493071	15493289	.	+	.	Parent=Os01t0375200-01
Chr01	irgsp1_rep	mRNA	15480089	15493270	.	+	.	ID=Os01t0375200-02;Name=Os01t0375200-02;Locus_id=Os01g0375200;Oryzabase Gene Symbol Synonym(s)=DHQDT/SDH%2C OsDHQDT/SDH%2C OsDHQDT%2C OsSDH%2C DHQDT%2C SDH%2C DHQ/SDH-1;Oryzabase Gene Name Synonym(s)=3-dehydroquinate dehydratase/shikimate dehydrogenase;Note=Similar to shikimate biosynthesis protein aroDE.;Transcript_evidence=AK073323 (DDBJ%2C Best hit);ORF_evidence=B6UCV5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: 3-dehydroquinate dehydratase activity (GO:0003855),Molecular Function: shikimate 3-dehydrogenase (NADP+) activity (GO:0004764);InterPro=Dehydroquinase class I (IPR001381),Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase (IPR006151),Shikimate dehydrogenase substrate binding%2C N-terminal (IPR013708),Aldolase-type TIM barrel (IPR013785),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033028O20;Oryzabase=16770;Expression=AK073323;TENOR=Os01t0375200-02;KEGG=Os01t0375200-02 (EC:1.1.1.25%2C EC:4.2.1.10)
Chr01	irgsp1_rep	five_prime_UTR	15480089	15480157	.	+	.	Parent=Os01t0375200-02
Chr01	irgsp1_rep	CDS	15480158	15480345	.	+	0	Parent=Os01t0375200-02
Chr01	irgsp1_rep	CDS	15485337	15485442	.	+	1	Parent=Os01t0375200-02
Chr01	irgsp1_rep	CDS	15486610	15486828	.	+	0	Parent=Os01t0375200-02
Chr01	irgsp1_rep	CDS	15487847	15488193	.	+	0	Parent=Os01t0375200-02
Chr01	irgsp1_rep	CDS	15489386	15489449	.	+	1	Parent=Os01t0375200-02
Chr01	irgsp1_rep	CDS	15489540	15489645	.	+	0	Parent=Os01t0375200-02
Chr01	irgsp1_rep	CDS	15489730	15489870	.	+	2	Parent=Os01t0375200-02
Chr01	irgsp1_rep	CDS	15491640	15491788	.	+	2	Parent=Os01t0375200-02
Chr01	irgsp1_rep	CDS	15491963	15492128	.	+	0	Parent=Os01t0375200-02
Chr01	irgsp1_rep	CDS	15492237	15492280	.	+	2	Parent=Os01t0375200-02
Chr01	irgsp1_rep	three_prime_UTR	15492281	15492283	.	+	.	Parent=Os01t0375200-02
Chr01	irgsp1_rep	three_prime_UTR	15493071	15493270	.	+	.	Parent=Os01t0375200-02
Chr01	irgsp1_rep	mRNA	15487873	15493392	.	+	.	ID=Os01t0375200-03;Name=Os01t0375200-03;Locus_id=Os01g0375200;Oryzabase Gene Symbol Synonym(s)=DHQDT/SDH%2C OsDHQDT/SDH%2C OsDHQDT%2C OsSDH%2C DHQDT%2C SDH%2C DHQ/SDH-1;Oryzabase Gene Name Synonym(s)=3-dehydroquinate dehydratase/shikimate dehydrogenase;Note=Similar to shikimate biosynthesis protein aroDE.;Transcript_evidence=AK063767 (DDBJ%2C Best hit);ORF_evidence=B6UCV5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: 3-dehydroquinate dehydratase activity (GO:0003855),Molecular Function: shikimate 3-dehydrogenase (NADP+) activity (GO:0004764),Molecular Function: NADP binding (GO:0050661);InterPro=Dehydroquinase class I (IPR001381),Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase (IPR006151),Shikimate dehydrogenase (IPR011342),Shikimate dehydrogenase substrate binding%2C N-terminal (IPR013708),Aldolase-type TIM barrel (IPR013785),NAD(P)-binding domain (IPR016040),Shikimate%2C quinate/shikimate dehydrogenase (IPR022893);NIAS_FLcDNA=001-121-B08;Oryzabase=16770;Expression=AK063767;TENOR=Os01t0375200-03;KEGG=Os01t0375200-03 (EC:1.1.1.25%2C EC:4.2.1.10)
Chr01	irgsp1_rep	five_prime_UTR	15487873	15487873	.	+	.	Parent=Os01t0375200-03
Chr01	irgsp1_rep	CDS	15487874	15488193	.	+	0	Parent=Os01t0375200-03
Chr01	irgsp1_rep	CDS	15489386	15489449	.	+	1	Parent=Os01t0375200-03
Chr01	irgsp1_rep	CDS	15489540	15489645	.	+	0	Parent=Os01t0375200-03
Chr01	irgsp1_rep	CDS	15489730	15489870	.	+	2	Parent=Os01t0375200-03
Chr01	irgsp1_rep	CDS	15491640	15491788	.	+	2	Parent=Os01t0375200-03
Chr01	irgsp1_rep	CDS	15491963	15492128	.	+	0	Parent=Os01t0375200-03
Chr01	irgsp1_rep	CDS	15492237	15492280	.	+	2	Parent=Os01t0375200-03
Chr01	irgsp1_rep	three_prime_UTR	15492281	15492283	.	+	.	Parent=Os01t0375200-03
Chr01	irgsp1_rep	three_prime_UTR	15493071	15493392	.	+	.	Parent=Os01t0375200-03
Chr01	irgsp1_rep	mRNA	15503196	15511423	.	+	.	ID=Os01t0375500-00;Name=Os01t0375500-00;Locus_id=Os01g0375500;Note=Similar to Shikimate biosynthesis protein aroDE.;Transcript_evidence=ab initio prediction;ORF_evidence=B6UCV5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: 3-dehydroquinate dehydratase activity (GO:0003855);InterPro=Dehydroquinase class I (IPR001381),Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase (IPR006151),Aldolase-type TIM barrel (IPR013785),NAD(P)-binding domain (IPR016040);TENOR=Os01t0375500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	15503196	15503234	.	+	0	Parent=Os01t0375500-00
Chr01	irgsp1_rep	CDS	15504631	15504849	.	+	0	Parent=Os01t0375500-00
Chr01	irgsp1_rep	CDS	15509971	15510076	.	+	0	Parent=Os01t0375500-00
Chr01	irgsp1_rep	CDS	15510165	15510305	.	+	2	Parent=Os01t0375500-00
Chr01	irgsp1_rep	CDS	15510622	15510770	.	+	2	Parent=Os01t0375500-00
Chr01	irgsp1_rep	CDS	15511127	15511292	.	+	0	Parent=Os01t0375500-00
Chr01	irgsp1_rep	CDS	15511380	15511423	.	+	2	Parent=Os01t0375500-00
Chr01	irgsp1_rep	mRNA	15542003	15542526	.	+	.	ID=Os01t0376200-01;Name=Os01t0376200-01;Locus_id=Os01g0376200;Note=Non-protein coding transcript.;Transcript_evidence=AK111320 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-181-D01;TENOR=Os01t0376200-01
Chr01	irgsp1_rep	exon	15542003	15542526	.	+	.	Parent=Os01t0376200-01
Chr01	irgsp1_rep	mRNA	15562767	15563289	.	+	.	ID=Os01t0376600-00;Name=Os01t0376600-00;Locus_id=Os01g0376600;Note=Hypothetical conserved gene.;Transcript_evidence=CT834842 (DDBJ%2C Best hit);ORF_evidence=Q5ZCU2 (UniProt);TENOR=Os01t0376600-00;KEGG=Os01t0376600-00
Chr01	irgsp1_rep	five_prime_UTR	15562767	15562790	.	+	.	Parent=Os01t0376600-00
Chr01	irgsp1_rep	CDS	15562791	15563147	.	+	0	Parent=Os01t0376600-00
Chr01	irgsp1_rep	three_prime_UTR	15563148	15563289	.	+	.	Parent=Os01t0376600-00
Chr01	irgsp1_rep	mRNA	15568888	15573347	.	-	.	ID=Os01t0376700-01;Name=Os01t0376700-01;Locus_id=Os01g0376700;Note=Similar to Sucrose-phosphatase (EC 3.1.3.24).;Transcript_evidence=AK071525 (DDBJ%2C Best hit);ORF_evidence=B7E8F4 (UniProt);GO=Biological Process: sucrose biosynthetic process (GO:0005986),Biological Process: metabolic process (GO:0008152),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphatase activity (GO:0016791),Molecular Function: sucrose-phosphate phosphatase activity (GO:0050307);InterPro=Sucrose-phosphate phosphatase (IPR006378),HAD-superfamily hydrolase%2C subfamily IIB (IPR006379),Sucrose-phosphate synthase (IPR006380),Sucrose phosphatase%2C plant/cyanobacteria (IPR012847),Sucrose-6-phosphate phosphohydrolase C-terminal (IPR013679),HAD-like domain (IPR023214);NIAS_FLcDNA=J023099K18;Expression=AK071525;TENOR=Os01t0376700-01;KEGG=Os01t0376700-01 (EC:3.1.3.24)
Chr01	irgsp1_rep	five_prime_UTR	15573240	15573347	.	-	.	Parent=Os01t0376700-01
Chr01	irgsp1_rep	five_prime_UTR	15572017	15572025	.	-	.	Parent=Os01t0376700-01
Chr01	irgsp1_rep	CDS	15571957	15572016	.	-	0	Parent=Os01t0376700-01
Chr01	irgsp1_rep	CDS	15571560	15571863	.	-	0	Parent=Os01t0376700-01
Chr01	irgsp1_rep	CDS	15571351	15571448	.	-	2	Parent=Os01t0376700-01
Chr01	irgsp1_rep	CDS	15571048	15571242	.	-	0	Parent=Os01t0376700-01
Chr01	irgsp1_rep	CDS	15570664	15570951	.	-	0	Parent=Os01t0376700-01
Chr01	irgsp1_rep	CDS	15570270	15570456	.	-	0	Parent=Os01t0376700-01
Chr01	irgsp1_rep	CDS	15569317	15569363	.	-	2	Parent=Os01t0376700-01
Chr01	irgsp1_rep	CDS	15569107	15569199	.	-	0	Parent=Os01t0376700-01
Chr01	irgsp1_rep	three_prime_UTR	15568888	15569106	.	-	.	Parent=Os01t0376700-01
Chr01	irgsp1_rep	mRNA	15581833	15583686	.	-	.	ID=Os01t0377000-01;Name=Os01t0377000-01;Locus_id=Os01g0377000;Note=CytoChrome P450 family protein.;Transcript_evidence=AK243494 (DDBJ%2C Best hit);ORF_evidence=B6TWF0 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J100074B19;TENOR=Os01t0377000-01;KEGG=Os01t0377000-01
Chr01	irgsp1_rep	five_prime_UTR	15583686	15583686	.	-	.	Parent=Os01t0377000-01
Chr01	irgsp1_rep	CDS	15582708	15583685	.	-	0	Parent=Os01t0377000-01
Chr01	irgsp1_rep	CDS	15581999	15582637	.	-	0	Parent=Os01t0377000-01
Chr01	irgsp1_rep	three_prime_UTR	15581833	15581998	.	-	.	Parent=Os01t0377000-01
Chr01	irgsp1_rep	mRNA	15582008	15582712	.	+	.	ID=Os01t0377250-00;Name=Os01t0377250-00;Locus_id=Os01g0377250;Note=Similar to CytoChrome P450 CYP71K15.;Transcript_evidence=EU942896 (DDBJ);ORF_evidence=B6TWF0 (UniProt);TENOR=Os01t0377250-00
Chr01	irgsp1_rep	CDS	15582008	15582712	.	+	0	Parent=Os01t0377250-00
Chr01	irgsp1_rep	mRNA	15618227	15624499	.	-	.	ID=Os01t0377500-01;Name=Os01t0377500-01;Locus_id=Os01g0377500;CGSNL Gene Symbol=CYCL1%3B1;CGSNL Gene Name=CYCLIN-L1-1;Oryzabase Gene Symbol Synonym(s)=CycL1%3B1%2C CycL1%3Bos%3B1%2C Orysa%3BCycL1%3B1;Oryzabase Gene Name Synonym(s)=L-type cyclin 1%3B1;Note=Similar to Ania-6a type cyclin.;Transcript_evidence=AK069233 (DDBJ%2C Best hit);ORF_evidence=Q9AS36 (UniProt);GO=Biological Process: regulation of cyclin-dependent protein kinase activity (GO:0000079),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: RNA processing (GO:0006396),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763),Cyclin C/H/T/L (IPR015429),Cyclin L (IPR017060);NIAS_FLcDNA=J023012N02;Oryzabase=13274;Expression=AK069233;TENOR=Os01t0377500-01;KEGG=Os01t0377500-01
Chr01	irgsp1_rep	five_prime_UTR	15624204	15624499	.	-	.	Parent=Os01t0377500-01
Chr01	irgsp1_rep	CDS	15624052	15624203	.	-	0	Parent=Os01t0377500-01
Chr01	irgsp1_rep	CDS	15621596	15621677	.	-	1	Parent=Os01t0377500-01
Chr01	irgsp1_rep	CDS	15621365	15621505	.	-	0	Parent=Os01t0377500-01
Chr01	irgsp1_rep	CDS	15621013	15621179	.	-	0	Parent=Os01t0377500-01
Chr01	irgsp1_rep	CDS	15619207	15619468	.	-	1	Parent=Os01t0377500-01
Chr01	irgsp1_rep	CDS	15618753	15619128	.	-	0	Parent=Os01t0377500-01
Chr01	irgsp1_rep	CDS	15618627	15618668	.	-	2	Parent=Os01t0377500-01
Chr01	irgsp1_rep	CDS	15618488	15618549	.	-	2	Parent=Os01t0377500-01
Chr01	irgsp1_rep	three_prime_UTR	15618227	15618487	.	-	.	Parent=Os01t0377500-01
Chr01	irgsp1_rep	mRNA	15644974	15647062	.	+	.	ID=Os01t0377700-01;Name=Os01t0377700-01;Locus_id=Os01g0377700;Note=Similar to NPL4 family protein.;Transcript_evidence=AK107503 (DDBJ%2C Best hit);ORF_evidence=B4FHK5 (UniProt);InterPro=Nuclear pore localisation protein NPL4 (IPR007717),Ubiquitin supergroup (IPR019955);NIAS_FLcDNA=002-129-E03;Expression=AK107503;TENOR=Os01t0377700-01;KEGG=Os01t0377700-01
Chr01	irgsp1_rep	five_prime_UTR	15644974	15645012	.	+	.	Parent=Os01t0377700-01
Chr01	irgsp1_rep	CDS	15645013	15646068	.	+	0	Parent=Os01t0377700-01
Chr01	irgsp1_rep	three_prime_UTR	15646069	15647062	.	+	.	Parent=Os01t0377700-01
Chr01	irgsp1_rep	mRNA	15644979	15649392	.	+	.	ID=Os01t0377700-02;Name=Os01t0377700-02;Locus_id=Os01g0377700;Note=NPL4 domain containing protein.;Transcript_evidence=AK059266 (DDBJ%2C Best hit);ORF_evidence=B4FHK5 (UniProt);InterPro=Nuclear pore localisation protein NPL4 (IPR007717),Ubiquitin supergroup (IPR019955);NIAS_FLcDNA=001-025-B02;Expression=AK059266;TENOR=Os01t0377700-02;KEGG=Os01t0377700-02
Chr01	irgsp1_rep	five_prime_UTR	15644979	15645012	.	+	.	Parent=Os01t0377700-02
Chr01	irgsp1_rep	CDS	15645013	15646008	.	+	0	Parent=Os01t0377700-02
Chr01	irgsp1_rep	CDS	15648954	15649205	.	+	0	Parent=Os01t0377700-02
Chr01	irgsp1_rep	three_prime_UTR	15649206	15649392	.	+	.	Parent=Os01t0377700-02
Chr01	irgsp1_rep	mRNA	15672663	15675607	.	-	.	ID=Os01t0378100-01;Name=Os01t0378100-01;Locus_id=Os01g0378100;Note=Plant peroxidase domain containing protein.;Transcript_evidence=AK242751 (DDBJ%2C Best hit);ORF_evidence=B9EWV6 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255);NIAS_FLcDNA=J090050I20;TENOR=Os01t0378100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	15675607	15675607	.	-	.	Parent=Os01t0378100-01
Chr01	irgsp1_rep	CDS	15675229	15675606	.	-	0	Parent=Os01t0378100-01
Chr01	irgsp1_rep	three_prime_UTR	15672663	15675228	.	-	.	Parent=Os01t0378100-01
Chr01	irgsp1_rep	mRNA	15760533	15763102	.	+	.	ID=Os01t0379101-01;Name=Os01t0379101-01;Locus_id=Os01g0379101;Note=Conserved hypothetical protein.;Transcript_evidence=AK242287 (DDBJ%2C Best hit);ORF_evidence=NP_001176870.1 (RefSeq);NIAS_FLcDNA=J075189O12;TENOR=Os01t0379101-01;KEGG=Os01t0379101-01
Chr01	irgsp1_rep	five_prime_UTR	15760533	15760645	.	+	.	Parent=Os01t0379101-01
Chr01	irgsp1_rep	CDS	15760646	15760807	.	+	0	Parent=Os01t0379101-01
Chr01	irgsp1_rep	three_prime_UTR	15760808	15760808	.	+	.	Parent=Os01t0379101-01
Chr01	irgsp1_rep	three_prime_UTR	15761430	15761494	.	+	.	Parent=Os01t0379101-01
Chr01	irgsp1_rep	three_prime_UTR	15761962	15762021	.	+	.	Parent=Os01t0379101-01
Chr01	irgsp1_rep	three_prime_UTR	15762837	15763102	.	+	.	Parent=Os01t0379101-01
Chr01	irgsp1_rep	mRNA	15777377	15780024	.	+	.	ID=Os01t0379400-01;Name=Os01t0379400-01;Locus_id=Os01g0379400;Oryzabase Gene Symbol Synonym(s)=OsFbox010%2C OsFbox10%2C Os_F0156%2C OsFBX6;Oryzabase Gene Name Synonym(s)=F-box protein 10;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK102388 (DDBJ%2C Best hit);ORF_evidence=A2ZTC7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033092D18;Oryzabase=16813;Expression=AK102388;TENOR=Os01t0379400-01;KEGG=Os01t0379400-01
Chr01	irgsp1_rep	five_prime_UTR	15777377	15777530	.	+	.	Parent=Os01t0379400-01
Chr01	irgsp1_rep	CDS	15777531	15777671	.	+	0	Parent=Os01t0379400-01
Chr01	irgsp1_rep	CDS	15778676	15779836	.	+	0	Parent=Os01t0379400-01
Chr01	irgsp1_rep	three_prime_UTR	15779837	15780024	.	+	.	Parent=Os01t0379400-01
Chr01	irgsp1_rep	mRNA	15777381	15779575	.	+	.	ID=Os01t0379400-02;Name=Os01t0379400-02;Locus_id=Os01g0379400;Oryzabase Gene Symbol Synonym(s)=OsFbox010%2C OsFbox10%2C Os_F0156%2C OsFBX6;Oryzabase Gene Name Synonym(s)=F-box protein 10;Note=Hypothetical conserved gene.;Transcript_evidence=AK064420 (DDBJ%2C Best hit);ORF_evidence=A2ZTC7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-110-B09;Oryzabase=16813;Expression=AK064420;TENOR=Os01t0379400-02;KEGG=Os01t0379400-02
Chr01	irgsp1_rep	five_prime_UTR	15777381	15777671	.	+	.	Parent=Os01t0379400-02
Chr01	irgsp1_rep	five_prime_UTR	15778683	15778687	.	+	.	Parent=Os01t0379400-02
Chr01	irgsp1_rep	CDS	15778688	15779575	.	+	0	Parent=Os01t0379400-02
Chr01	irgsp1_rep	mRNA	15777387	15780996	.	+	.	ID=Os01t0379400-03;Name=Os01t0379400-03;Locus_id=Os01g0379400;Oryzabase Gene Symbol Synonym(s)=OsFbox010%2C OsFbox10%2C Os_F0156%2C OsFBX6;Oryzabase Gene Name Synonym(s)=F-box protein 10;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK110939 (DDBJ%2C Best hit);ORF_evidence=A2ZTC7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-173-G08;Oryzabase=16813;Expression=AK110939;TENOR=Os01t0379400-03;KEGG=Os01t0379400-03
Chr01	irgsp1_rep	five_prime_UTR	15777387	15777530	.	+	.	Parent=Os01t0379400-03
Chr01	irgsp1_rep	CDS	15777531	15777671	.	+	0	Parent=Os01t0379400-03
Chr01	irgsp1_rep	CDS	15778676	15779836	.	+	0	Parent=Os01t0379400-03
Chr01	irgsp1_rep	three_prime_UTR	15779837	15780180	.	+	.	Parent=Os01t0379400-03
Chr01	irgsp1_rep	three_prime_UTR	15780653	15780996	.	+	.	Parent=Os01t0379400-03
Chr01	irgsp1_rep	mRNA	15798713	15802130	.	+	.	ID=Os01t0379800-00;Name=Os01t0379800-00;Locus_id=Os01g0379800;Note=Similar to HAT family dimerisation domain containing protein.;Transcript_evidence=AK122139 (DDBJ%2C Secondary hit);ORF_evidence=Q2QPA8 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677);InterPro=Zinc finger%2C BED-type predicted (IPR003656),Domain of unknown function DUF659 (IPR007021),Ribonuclease H-like (IPR012337);Expression=AK122139;TENOR=Os01t0379800-00;KEGG=Os01t0379800-00
Chr01	irgsp1_rep	five_prime_UTR	15798713	15799001	.	+	.	Parent=Os01t0379800-00
Chr01	irgsp1_rep	CDS	15799002	15799017	.	+	0	Parent=Os01t0379800-00
Chr01	irgsp1_rep	CDS	15799298	15801150	.	+	2	Parent=Os01t0379800-00
Chr01	irgsp1_rep	three_prime_UTR	15801151	15801325	.	+	.	Parent=Os01t0379800-00
Chr01	irgsp1_rep	three_prime_UTR	15801443	15801656	.	+	.	Parent=Os01t0379800-00
Chr01	irgsp1_rep	three_prime_UTR	15801684	15802130	.	+	.	Parent=Os01t0379800-00
Chr01	irgsp1_rep	mRNA	15853158	15854437	.	+	.	ID=Os01t0380800-00;Name=Os01t0380800-00;Locus_id=Os01g0380800;Oryzabase Gene Symbol Synonym(s)=OsFbox011%2C OsFbox11%2C Os_F0196%2C OsFBX7;Oryzabase Gene Name Synonym(s)=F-box protein 11;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK374904 (DDBJ);ORF_evidence=NP_001043088.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=16814;TENOR=Os01t0380800-00
Chr01	irgsp1_rep	CDS	15853158	15854333	.	+	0	Parent=Os01t0380800-00
Chr01	irgsp1_rep	three_prime_UTR	15854334	15854437	.	+	.	Parent=Os01t0380800-00
Chr01	irgsp1_rep	mRNA	15882756	15883307	.	-	.	ID=Os01t0381325-00;Name=Os01t0381325-00;Locus_id=Os01g0381325;Note=Conserved hypothetical protein.;Transcript_evidence=FP091535 (DDBJ);ORF_evidence=NP_001054594.1 (RefSeq);TENOR=Os01t0381325-00
Chr01	irgsp1_rep	CDS	15882960	15883307	.	-	0	Parent=Os01t0381325-00
Chr01	irgsp1_rep	three_prime_UTR	15882756	15882959	.	-	.	Parent=Os01t0381325-00
Chr01	irgsp1_rep	mRNA	15934495	15935317	.	+	.	ID=Os01t0382000-01;Name=Os01t0382000-01;Locus_id=Os01g0382000;CGSNL Gene Symbol=PR1B;CGSNL Gene Name=PATHOGENESIS-RELATED GENE 1B;Oryzabase Gene Symbol Synonym(s)=OsPR1b%2C PR1b%2C OsPR1#011%2C OsPR1-11%2C PR-1b%2C OsPR-1b%2C PR1%2C PR-1;Oryzabase Gene Name Synonym(s)=pathogenesis-related gene 1b%2C PR1 basic%2C Pathogenesis-related protein class 1 basic gene%2C basic PR protein 1%2C Pathogenesis-related protein class 1%2C pathogenesis-related 1 protein;Note=Similar to Pathogenesis-related protein PRB1-2 precursor.;Transcript_evidence=AK107926 (DDBJ%2C Best hit);ORF_evidence=O04000 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Allergen V5/Tpx-1-related (IPR001283),Ves allergen (IPR002413),CAP domain (IPR014044),Allergen V5/Tpx-1-related%2C conserved site (IPR018244);NIAS_FLcDNA=002-134-H09;Oryzabase=6277;Expression=AK107926;TENOR=Os01t0382000-01;KEGG=Os01t0382000-01
Chr01	irgsp1_rep	five_prime_UTR	15934495	15934575	.	+	.	Parent=Os01t0382000-01
Chr01	irgsp1_rep	CDS	15934576	15935070	.	+	0	Parent=Os01t0382000-01
Chr01	irgsp1_rep	three_prime_UTR	15935071	15935317	.	+	.	Parent=Os01t0382000-01
Chr01	irgsp1_rep	mRNA	15948833	15953007	.	+	.	ID=Os01t0382200-01;Name=Os01t0382200-01;Locus_id=Os01g0382200;Note=Transferase family protein.;Transcript_evidence=AK107406 (DDBJ%2C Best hit);ORF_evidence=A2ZTD6 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=002-127-E04;TENOR=Os01t0382200-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	15948833	15949195	.	+	0	Parent=Os01t0382200-01
Chr01	irgsp1_rep	CDS	15951926	15952885	.	+	0	Parent=Os01t0382200-01
Chr01	irgsp1_rep	three_prime_UTR	15952886	15953007	.	+	.	Parent=Os01t0382200-01
Chr01	irgsp1_rep	mRNA	15958748	15959497	.	-	.	ID=Os01t0382400-01;Name=Os01t0382400-01;Locus_id=Os01g0382400;CGSNL Gene Symbol=PR1-12;CGSNL Gene Name=PATHOGENESIS-RELATED GENE 1-12;Oryzabase Gene Symbol Synonym(s)=OsPR1#012%2C PR1#012%2C OsPR1-12;Oryzabase Gene Name Synonym(s)=pathogenesis-related protein 1-12%2C PR protein 1-12;Note=Similar to Pathogenesis-related protein PRB1-2 precursor.;Transcript_evidence=AK121108 (DDBJ%2C Best hit);ORF_evidence=A0N0C3 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Allergen V5/Tpx-1-related (IPR001283),Ves allergen (IPR002413),CAP domain (IPR014044),Allergen V5/Tpx-1-related%2C conserved site (IPR018244);NIAS_FLcDNA=J023072K01;Oryzabase=13348;Expression=AK121108;TENOR=Os01t0382400-01;KEGG=Os01t0382400-01
Chr01	irgsp1_rep	five_prime_UTR	15959460	15959497	.	-	.	Parent=Os01t0382400-01
Chr01	irgsp1_rep	CDS	15958956	15959459	.	-	0	Parent=Os01t0382400-01
Chr01	irgsp1_rep	three_prime_UTR	15958748	15958955	.	-	.	Parent=Os01t0382400-01
Chr01	irgsp1_rep	mRNA	15960361	15962152	.	-	.	ID=Os01t0382450-01;Name=Os01t0382450-01;Locus_id=Os01g0382450;Note=Similar to Kinesin heavy chain (Fragment).;Transcript_evidence=AK241376 (DDBJ%2C Best hit);ORF_evidence=Q93XF4 (UniProt);NIAS_FLcDNA=J065155G18;TENOR=Os01t0382450-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	15961764	15962152	.	-	.	Parent=Os01t0382450-01
Chr01	irgsp1_rep	CDS	15961648	15961763	.	-	0	Parent=Os01t0382450-01
Chr01	irgsp1_rep	CDS	15960520	15960649	.	-	1	Parent=Os01t0382450-01
Chr01	irgsp1_rep	three_prime_UTR	15960361	15960519	.	-	.	Parent=Os01t0382450-01
Chr01	irgsp1_rep	mRNA	15966105	15967644	.	-	.	ID=Os01t0382500-01;Name=Os01t0382500-01;Locus_id=Os01g0382500;Note=Conserved hypothetical protein.;Transcript_evidence=AK105518 (DDBJ%2C Best hit);ORF_evidence=B8BKG3 (UniProt);NIAS_FLcDNA=001-127-F07;TENOR=Os01t0382500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	15967137	15967644	.	-	.	Parent=Os01t0382500-01
Chr01	irgsp1_rep	CDS	15966213	15967136	.	-	0	Parent=Os01t0382500-01
Chr01	irgsp1_rep	three_prime_UTR	15966105	15966212	.	-	.	Parent=Os01t0382500-01
Chr01	irgsp1_rep	mRNA	15975326	15980513	.	+	.	ID=Os01t0382700-01;Name=Os01t0382700-01;Locus_id=Os01g0382700;Note=Similar to stress regulated protein.;Transcript_evidence=AK071607 (DDBJ%2C Best hit);ORF_evidence=NP_001151260.1 (RefSeq);NIAS_FLcDNA=J023102F19;Expression=AK071607;TENOR=Os01t0382700-01;KEGG=Os01t0382700-01
Chr01	irgsp1_rep	five_prime_UTR	15975326	15975332	.	+	.	Parent=Os01t0382700-01
Chr01	irgsp1_rep	CDS	15975333	15975596	.	+	0	Parent=Os01t0382700-01
Chr01	irgsp1_rep	CDS	15975894	15976112	.	+	0	Parent=Os01t0382700-01
Chr01	irgsp1_rep	CDS	15976559	15976645	.	+	0	Parent=Os01t0382700-01
Chr01	irgsp1_rep	CDS	15977593	15977739	.	+	0	Parent=Os01t0382700-01
Chr01	irgsp1_rep	CDS	15978583	15978609	.	+	0	Parent=Os01t0382700-01
Chr01	irgsp1_rep	CDS	15979954	15980049	.	+	0	Parent=Os01t0382700-01
Chr01	irgsp1_rep	CDS	15980159	15980359	.	+	0	Parent=Os01t0382700-01
Chr01	irgsp1_rep	three_prime_UTR	15980360	15980513	.	+	.	Parent=Os01t0382700-01
Chr01	irgsp1_rep	mRNA	15975356	15980519	.	+	.	ID=Os01t0382700-02;Name=Os01t0382700-02;Locus_id=Os01g0382700;Note=Similar to stress regulated protein.;Transcript_evidence=AK060075 (DDBJ%2C Best hit);ORF_evidence=NP_001151260.1 (RefSeq);NIAS_FLcDNA=006-306-B06;Expression=AK060075;TENOR=Os01t0382700-02;KEGG=Os01t0382700-02
Chr01	irgsp1_rep	five_prime_UTR	15975356	15975356	.	+	.	Parent=Os01t0382700-02
Chr01	irgsp1_rep	CDS	15975357	15975596	.	+	0	Parent=Os01t0382700-02
Chr01	irgsp1_rep	CDS	15975894	15976112	.	+	0	Parent=Os01t0382700-02
Chr01	irgsp1_rep	CDS	15976551	15976580	.	+	0	Parent=Os01t0382700-02
Chr01	irgsp1_rep	three_prime_UTR	15976581	15976645	.	+	.	Parent=Os01t0382700-02
Chr01	irgsp1_rep	three_prime_UTR	15977593	15977739	.	+	.	Parent=Os01t0382700-02
Chr01	irgsp1_rep	three_prime_UTR	15978583	15978609	.	+	.	Parent=Os01t0382700-02
Chr01	irgsp1_rep	three_prime_UTR	15979954	15980049	.	+	.	Parent=Os01t0382700-02
Chr01	irgsp1_rep	three_prime_UTR	15980159	15980519	.	+	.	Parent=Os01t0382700-02
Chr01	irgsp1_rep	mRNA	15992759	15996844	.	+	.	ID=Os01t0382900-01;Name=Os01t0382900-01;Locus_id=Os01g0382900;Note=Conserved hypothetical protein.;Transcript_evidence=AK120825 (DDBJ%2C Best hit);ORF_evidence=B8BGF5 (UniProt);NIAS_FLcDNA=J023019E06;Expression=AK120825;TENOR=Os01t0382900-01;KEGG=Os01t0382900-01
Chr01	irgsp1_rep	five_prime_UTR	15992759	15993237	.	+	.	Parent=Os01t0382900-01
Chr01	irgsp1_rep	CDS	15993238	15993356	.	+	0	Parent=Os01t0382900-01
Chr01	irgsp1_rep	CDS	15994344	15994473	.	+	1	Parent=Os01t0382900-01
Chr01	irgsp1_rep	CDS	15995255	15995335	.	+	0	Parent=Os01t0382900-01
Chr01	irgsp1_rep	CDS	15996128	15996226	.	+	0	Parent=Os01t0382900-01
Chr01	irgsp1_rep	three_prime_UTR	15996227	15996844	.	+	.	Parent=Os01t0382900-01
Chr01	irgsp1_rep	mRNA	15997945	15998841	.	-	.	ID=Os01t0383001-00;Name=Os01t0383001-00;Locus_id=Os01g0383001;Note=Hypothetical conserved gene.;Transcript_evidence=BT033254 (DDBJ);ORF_evidence=A2ZTE2 (UniProt);TENOR=Os01t0383001-00;KEGG=Os01t0383001-00
Chr01	irgsp1_rep	CDS	15997945	15998841	.	-	0	Parent=Os01t0383001-00
Chr01	irgsp1_rep	mRNA	16000688	16003329	.	-	.	ID=Os01t0383100-01;Name=Os01t0383100-01;Locus_id=Os01g0383100;CGSNL Gene Symbol=EXO70FX7;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX7;Oryzabase Gene Symbol Synonym(s)=OsEXO70FX7%2C OsExo70FX7%2C OrysaFX7_Exo70;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein FX7;Note=Hypothetical conserved gene.;Transcript_evidence=AK241094 (DDBJ%2C Best hit);ORF_evidence=Q5VP18 (UniProt);GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exo70 exocyst complex subunit (IPR004140),Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=J065076J07;Oryzabase=20349;TENOR=Os01t0383100-01;KEGG=Os01t0383100-01
Chr01	irgsp1_rep	five_prime_UTR	16003327	16003329	.	-	.	Parent=Os01t0383100-01
Chr01	irgsp1_rep	CDS	16003058	16003326	.	-	0	Parent=Os01t0383100-01
Chr01	irgsp1_rep	CDS	16002317	16002970	.	-	1	Parent=Os01t0383100-01
Chr01	irgsp1_rep	CDS	16000965	16002087	.	-	1	Parent=Os01t0383100-01
Chr01	irgsp1_rep	three_prime_UTR	16000688	16000964	.	-	.	Parent=Os01t0383100-01
Chr01	irgsp1_rep	mRNA	16046692	16056268	.	+	.	ID=Os01t0383700-01;Name=Os01t0383700-01;Locus_id=Os01g0383700;Oryzabase Gene Symbol Synonym(s)=OsWD40-14;Note=Similar to LEC14B protein.;Transcript_evidence=AK070583 (DDBJ%2C Best hit);ORF_evidence=B6U179 (UniProt);NIAS_FLcDNA=J023062O12;Oryzabase=10695;Expression=AK070583;TENOR=Os01t0383700-01;KEGG=Os01t0383700-01
Chr01	irgsp1_rep	five_prime_UTR	16046692	16046935	.	+	.	Parent=Os01t0383700-01
Chr01	irgsp1_rep	five_prime_UTR	16047213	16047332	.	+	.	Parent=Os01t0383700-01
Chr01	irgsp1_rep	five_prime_UTR	16048106	16048114	.	+	.	Parent=Os01t0383700-01
Chr01	irgsp1_rep	CDS	16048115	16048472	.	+	0	Parent=Os01t0383700-01
Chr01	irgsp1_rep	CDS	16048616	16048620	.	+	2	Parent=Os01t0383700-01
Chr01	irgsp1_rep	three_prime_UTR	16048621	16048735	.	+	.	Parent=Os01t0383700-01
Chr01	irgsp1_rep	three_prime_UTR	16049736	16049813	.	+	.	Parent=Os01t0383700-01
Chr01	irgsp1_rep	three_prime_UTR	16050781	16050954	.	+	.	Parent=Os01t0383700-01
Chr01	irgsp1_rep	three_prime_UTR	16051865	16051942	.	+	.	Parent=Os01t0383700-01
Chr01	irgsp1_rep	three_prime_UTR	16052359	16052531	.	+	.	Parent=Os01t0383700-01
Chr01	irgsp1_rep	three_prime_UTR	16052778	16054896	.	+	.	Parent=Os01t0383700-01
Chr01	irgsp1_rep	three_prime_UTR	16055684	16056268	.	+	.	Parent=Os01t0383700-01
Chr01	irgsp1_rep	mRNA	16061947	16067655	.	+	.	ID=Os01t0383900-01;Name=Os01t0383900-01;Locus_id=Os01g0383900;RAP-DB Gene Symbol Synonym(s)=APIP12;RAP-DB Gene Name Synonym(s)=AvrPiz-t interacting protein 12;Oryzabase Gene Symbol Synonym(s)=APIP12;Oryzabase Gene Name Synonym(s)=AvrPiz-t Interacting Protein 12;Note=Homologue of nucleoporin protein Nup98%2C Target of the M. oryzae avirulence effector AvrPiz-t%2C Basal resistance against M. oryzae;Transcript_evidence=AK105445;ORF_evidence=Q5VNZ1;GO=Biological Process: nucleocytoplasmic transport (GO:0006913),Molecular Function: structural constituent of nuclear pore (GO:0017056),Cellular Component: nuclear pore (GO:0005643);InterPro=Peptidase S59%2C nucleoporin superfamily (IPR036903),Peptidase S59%2C nucleoporin (IPR007230);NIAS_FLcDNA=001-125-A12;Manual Curation=August 4%2C 2020;Literature_PMID=28205154;Oryzabase=21626;Expression=AK105445;TENOR=Os01t0383900-01;KEGG=Os01t0383900-01
Chr01	irgsp1_rep	five_prime_UTR	16061947	16062055	.	+	.	Parent=Os01t0383900-01
Chr01	irgsp1_rep	five_prime_UTR	16062847	16062848	.	+	.	Parent=Os01t0383900-01
Chr01	irgsp1_rep	CDS	16062849	16063029	.	+	0	Parent=Os01t0383900-01
Chr01	irgsp1_rep	CDS	16064235	16064387	.	+	2	Parent=Os01t0383900-01
Chr01	irgsp1_rep	CDS	16064929	16065452	.	+	2	Parent=Os01t0383900-01
Chr01	irgsp1_rep	CDS	16065530	16065652	.	+	0	Parent=Os01t0383900-01
Chr01	irgsp1_rep	CDS	16065839	16065952	.	+	0	Parent=Os01t0383900-01
Chr01	irgsp1_rep	CDS	16066174	16066336	.	+	0	Parent=Os01t0383900-01
Chr01	irgsp1_rep	CDS	16066888	16067483	.	+	2	Parent=Os01t0383900-01
Chr01	irgsp1_rep	three_prime_UTR	16067484	16067655	.	+	.	Parent=Os01t0383900-01
Chr01	irgsp1_rep	mRNA	16062035	16067655	.	+	.	ID=Os01t0383900-02;Name=Os01t0383900-02;Locus_id=Os01g0383900;Oryzabase Gene Symbol Synonym(s)=APIP12;Oryzabase Gene Name Synonym(s)=AvrPiz-t Interacting Protein 12;Note=Peptidase S59%2C nucleoporin family protein.;Transcript_evidence=AK072730 (DDBJ%2C Best hit);ORF_evidence=B9EWW8 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: nuclear pore (GO:0005643);InterPro=Peptidase S59%2C nucleoporin (IPR007230);NIAS_FLcDNA=J023142A05;Oryzabase=21626;Expression=AK072730;TENOR=Os01t0383900-02;KEGG=Os01t0383900-02
Chr01	irgsp1_rep	five_prime_UTR	16062035	16062250	.	+	.	Parent=Os01t0383900-02
Chr01	irgsp1_rep	five_prime_UTR	16062847	16062848	.	+	.	Parent=Os01t0383900-02
Chr01	irgsp1_rep	CDS	16062849	16063029	.	+	0	Parent=Os01t0383900-02
Chr01	irgsp1_rep	CDS	16064235	16064387	.	+	2	Parent=Os01t0383900-02
Chr01	irgsp1_rep	CDS	16064929	16065452	.	+	2	Parent=Os01t0383900-02
Chr01	irgsp1_rep	CDS	16065530	16065652	.	+	0	Parent=Os01t0383900-02
Chr01	irgsp1_rep	CDS	16065839	16065952	.	+	0	Parent=Os01t0383900-02
Chr01	irgsp1_rep	CDS	16066174	16066336	.	+	0	Parent=Os01t0383900-02
Chr01	irgsp1_rep	CDS	16066888	16067483	.	+	2	Parent=Os01t0383900-02
Chr01	irgsp1_rep	three_prime_UTR	16067484	16067655	.	+	.	Parent=Os01t0383900-02
Chr01	irgsp1_rep	mRNA	16086670	16088900	.	+	.	ID=Os01t0384300-00;Name=Os01t0384300-00;Locus_id=Os01g0384300;Note=Similar to RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3)%3B kinase.;Transcript_evidence=AK364459 (DDBJ);ORF_evidence=B6SVR3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os01t0384300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	16086670	16086749	.	+	.	Parent=Os01t0384300-00
Chr01	irgsp1_rep	CDS	16086750	16088672	.	+	0	Parent=Os01t0384300-00
Chr01	irgsp1_rep	three_prime_UTR	16088673	16088900	.	+	.	Parent=Os01t0384300-00
Chr01	irgsp1_rep	mRNA	16097450	16101605	.	+	.	ID=Os01t0384375-01;Name=Os01t0384375-01;Locus_id=Os01g0384375;Note=Non-protein coding transcript.;Transcript_evidence=AK288892 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090080C08;TENOR=Os01t0384375-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	exon	16097450	16101605	.	+	.	Parent=Os01t0384375-01
Chr01	irgsp1_rep	mRNA	16101903	16104680	.	-	.	ID=Os01t0384450-01;Name=Os01t0384450-01;Locus_id=Os01g0384450;Note=Similar to H0124E07.4 protein.;Transcript_evidence=AK240866 (DDBJ%2C Best hit);ORF_evidence=Q25AH9 (UniProt);NIAS_FLcDNA=J065024C22;TENOR=Os01t0384450-01;KEGG=Os01t0384450-01
Chr01	irgsp1_rep	five_prime_UTR	16104422	16104680	.	-	.	Parent=Os01t0384450-01
Chr01	irgsp1_rep	five_prime_UTR	16104327	16104347	.	-	.	Parent=Os01t0384450-01
Chr01	irgsp1_rep	CDS	16104255	16104326	.	-	0	Parent=Os01t0384450-01
Chr01	irgsp1_rep	CDS	16103425	16103491	.	-	0	Parent=Os01t0384450-01
Chr01	irgsp1_rep	CDS	16102059	16102171	.	-	2	Parent=Os01t0384450-01
Chr01	irgsp1_rep	three_prime_UTR	16101903	16102058	.	-	.	Parent=Os01t0384450-01
Chr01	irgsp1_rep	mRNA	16130515	16131331	.	+	.	ID=Os01t0384800-01;Name=Os01t0384800-01;Locus_id=Os01g0384800;Note=Conserved hypothetical protein.;Transcript_evidence=AK119688 (DDBJ%2C Best hit),AK120910 (DDBJ%2C Best hit);ORF_evidence=A2WQB8 (UniProt);NIAS_FLcDNA=002-157-A09,J023034B07;Expression=AK119688;TENOR=Os01t0384800-01;KEGG=Os01t0384800-01
Chr01	irgsp1_rep	five_prime_UTR	16130515	16130601	.	+	.	Parent=Os01t0384800-01
Chr01	irgsp1_rep	CDS	16130602	16130955	.	+	0	Parent=Os01t0384800-01
Chr01	irgsp1_rep	three_prime_UTR	16130956	16131331	.	+	.	Parent=Os01t0384800-01
Chr01	irgsp1_rep	mRNA	16135873	16141845	.	+	.	ID=Os01t0384901-01;Name=Os01t0384901-01;Locus_id=Os01g0384901;Note=Hypothetical gene.;Transcript_evidence=AK288683 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090059L03;TENOR=Os01t0384901-01;KEGG=Os01t0384901-01
Chr01	irgsp1_rep	five_prime_UTR	16135873	16136934	.	+	.	Parent=Os01t0384901-01
Chr01	irgsp1_rep	CDS	16136935	16137192	.	+	0	Parent=Os01t0384901-01
Chr01	irgsp1_rep	three_prime_UTR	16137193	16141845	.	+	.	Parent=Os01t0384901-01
Chr01	irgsp1_rep	mRNA	16136206	16141134	.	-	.	ID=Os01t0385000-01;Name=Os01t0385000-01;Locus_id=Os01g0385000;Note=Conserved hypothetical protein.;Transcript_evidence=AK240775 (DDBJ%2C Best hit);ORF_evidence=Q5VNY0 (UniProt);NIAS_FLcDNA=J053068I17;TENOR=Os01t0385000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	16141133	16141134	.	-	.	Parent=Os01t0385000-01
Chr01	irgsp1_rep	CDS	16141050	16141132	.	-	0	Parent=Os01t0385000-01
Chr01	irgsp1_rep	CDS	16139175	16139277	.	-	1	Parent=Os01t0385000-01
Chr01	irgsp1_rep	CDS	16137889	16138029	.	-	0	Parent=Os01t0385000-01
Chr01	irgsp1_rep	CDS	16136518	16136658	.	-	0	Parent=Os01t0385000-01
Chr01	irgsp1_rep	three_prime_UTR	16136206	16136517	.	-	.	Parent=Os01t0385000-01
Chr01	irgsp1_rep	mRNA	16151562	16154044	.	-	.	ID=Os01t0385400-01;Name=Os01t0385400-01;Locus_id=Os01g0385400;CGSNL Gene Symbol=SLAC7;CGSNL Gene Name=SLOW ANION CHANNEL 7;Oryzabase Gene Symbol Synonym(s)=OsSLAC7;Oryzabase Gene Name Synonym(s)=SLOW ANION CHANNEL-ASSOCIATED 7;Note=C4-dicarboxylate transporter/malic acid transport protein family protein.;Transcript_evidence=AK064337 (DDBJ%2C Best hit);ORF_evidence=B6SWN8 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=C4-dicarboxylate transporter/malic acid transport protein (IPR004695);NIAS_FLcDNA=002-107-G11;Oryzabase=21755;Expression=AK064337;TENOR=Os01t0385400-01;KEGG=Os01t0385400-01
Chr01	irgsp1_rep	five_prime_UTR	16153875	16154044	.	-	.	Parent=Os01t0385400-01
Chr01	irgsp1_rep	CDS	16153719	16153874	.	-	0	Parent=Os01t0385400-01
Chr01	irgsp1_rep	CDS	16153051	16153632	.	-	0	Parent=Os01t0385400-01
Chr01	irgsp1_rep	CDS	16151815	16152954	.	-	0	Parent=Os01t0385400-01
Chr01	irgsp1_rep	three_prime_UTR	16151562	16151814	.	-	.	Parent=Os01t0385400-01
Chr01	irgsp1_rep	mRNA	16151562	16153389	.	-	.	ID=Os01t0385400-02;Name=Os01t0385400-02;Locus_id=Os01g0385400;CGSNL Gene Symbol=SLAC7;CGSNL Gene Name=SLOW ANION CHANNEL 7;Oryzabase Gene Symbol Synonym(s)=OsSLAC7;Oryzabase Gene Name Synonym(s)=SLOW ANION CHANNEL-ASSOCIATED 7;Note=Similar to C4-dicarboxylate transporter/malic acid transport protein.;Transcript_evidence=AK073340 (DDBJ%2C Best hit);ORF_evidence=B6SWN8 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=C4-dicarboxylate transporter/malic acid transport protein (IPR004695);NIAS_FLcDNA=J033028N18;Oryzabase=21755;Expression=AK073340;TENOR=Os01t0385400-02;KEGG=Os01t0385400-02
Chr01	irgsp1_rep	CDS	16153051	16153389	.	-	0	Parent=Os01t0385400-02
Chr01	irgsp1_rep	CDS	16151815	16152954	.	-	0	Parent=Os01t0385400-02
Chr01	irgsp1_rep	three_prime_UTR	16151562	16151814	.	-	.	Parent=Os01t0385400-02
Chr01	irgsp1_rep	mRNA	16224955	16226730	.	-	.	ID=Os01t0386500-01;Name=Os01t0386500-01;Locus_id=Os01g0386500;Oryzabase Gene Symbol Synonym(s)=OsRNAG;Oryzabase Gene Name Synonym(s)=Receptor mediating netrin-dependent axon guidance homolog;Note=Conserved hypothetical protein.;Transcript_evidence=AK106513 (DDBJ%2C Best hit);ORF_evidence=NP_001173243.1 (RefSeq);NIAS_FLcDNA=002-107-A08;Oryzabase=12485;TENOR=Os01t0386500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	16226601	16226730	.	-	.	Parent=Os01t0386500-01
Chr01	irgsp1_rep	CDS	16226310	16226600	.	-	0	Parent=Os01t0386500-01
Chr01	irgsp1_rep	three_prime_UTR	16224955	16226309	.	-	.	Parent=Os01t0386500-01
Chr01	irgsp1_rep	mRNA	16227573	16227890	.	+	.	ID=Os01t0386600-00;Name=Os01t0386600-00;Locus_id=Os01g0386600;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=TGF-beta receptor%2C type I/II extracellular region family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_190964.2 (RefSeq);Oryzabase=23629;TENOR=Os01t0386600-00;KEGG=Os01t0386600-00
Chr01	irgsp1_rep	CDS	16227573	16227890	.	+	0	Parent=Os01t0386600-00
Chr01	irgsp1_rep	mRNA	16232158	16234453	.	+	.	ID=Os01t0386700-01;Name=Os01t0386700-01;Locus_id=Os01g0386700;Note=Similar to BSK1 (BR-SIGNALING KINASE 1)%3B ATP binding / binding / kinase/ protein kinase/ protein tyrosine kinase.;Transcript_evidence=AK067913 (DDBJ%2C Best hit);ORF_evidence=NP_567980.1 (RefSeq);NIAS_FLcDNA=J013124D13;TENOR=Os01t0386700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	16232158	16232583	.	+	.	Parent=Os01t0386700-01
Chr01	irgsp1_rep	five_prime_UTR	16232984	16233063	.	+	.	Parent=Os01t0386700-01
Chr01	irgsp1_rep	five_prime_UTR	16233530	16233653	.	+	.	Parent=Os01t0386700-01
Chr01	irgsp1_rep	CDS	16233654	16233860	.	+	0	Parent=Os01t0386700-01
Chr01	irgsp1_rep	three_prime_UTR	16233861	16233920	.	+	.	Parent=Os01t0386700-01
Chr01	irgsp1_rep	three_prime_UTR	16234057	16234453	.	+	.	Parent=Os01t0386700-01
Chr01	irgsp1_rep	mRNA	16279679	16280251	.	-	.	ID=Os01t0387133-00;Name=Os01t0387133-00;Locus_id=Os01g0387133;Note=Hypothetical gene.;Transcript_evidence=CT834865 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os01t0387133-00;KEGG=Os01t0387133-00
Chr01	irgsp1_rep	CDS	16280000	16280251	.	-	0	Parent=Os01t0387133-00
Chr01	irgsp1_rep	three_prime_UTR	16279679	16279999	.	-	.	Parent=Os01t0387133-00
Chr01	irgsp1_rep	mRNA	16315793	16318736	.	+	.	ID=Os01t0387566-00;Name=Os01t0387566-00;Locus_id=Os01g0387566;Note=Conserved hypothetical protein.;Transcript_evidence=CT837589 (DDBJ%2C Best hit);ORF_evidence=NP_001174322.1 (RefSeq);TENOR=Os01t0387566-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	16315793	16315904	.	+	.	Parent=Os01t0387566-00
Chr01	irgsp1_rep	CDS	16315905	16316054	.	+	0	Parent=Os01t0387566-00
Chr01	irgsp1_rep	CDS	16316153	16316194	.	+	0	Parent=Os01t0387566-00
Chr01	irgsp1_rep	three_prime_UTR	16316195	16316239	.	+	.	Parent=Os01t0387566-00
Chr01	irgsp1_rep	three_prime_UTR	16318471	16318736	.	+	.	Parent=Os01t0387566-00
Chr01	irgsp1_rep	mRNA	16322731	16325678	.	+	.	ID=Os01t0387865-01;Name=Os01t0387865-01;Locus_id=Os01g0387865;Note=Hypothetical conserved gene.;Transcript_evidence=AK289090 (DDBJ%2C Best hit);ORF_evidence=B9EX19 (UniProt);NIAS_FLcDNA=J090095N19;TENOR=Os01t0387865-01;KEGG=Os01t0387865-01
Chr01	irgsp1_rep	five_prime_UTR	16322731	16324328	.	+	.	Parent=Os01t0387865-01
Chr01	irgsp1_rep	CDS	16324329	16324538	.	+	0	Parent=Os01t0387865-01
Chr01	irgsp1_rep	three_prime_UTR	16324539	16325678	.	+	.	Parent=Os01t0387865-01
Chr01	irgsp1_rep	mRNA	16325492	16327497	.	-	.	ID=Os01t0388000-01;Name=Os01t0388000-01;Locus_id=Os01g0388000;CGSNL Gene Symbol=CYP734A6;CGSNL Gene Name=CYTOCHROME P450 HYDROXYLASE 734A6;Oryzabase Gene Symbol Synonym(s)=OsCYP734A6;Note=Similar to CytoChrome P450 monooxygenase CYP72A5 (Fragment).;Transcript_evidence=AK069778 (DDBJ%2C Best hit);ORF_evidence=B9X287 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: monooxygenase activity (GO:0004497),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group IV (IPR002403),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J023027L10;Oryzabase=14298;Expression=AK069778;TENOR=Os01t0388000-01;KEGG=Os01t0388000-01 (EC:1.14.14.1)
Chr01	irgsp1_rep	five_prime_UTR	16327355	16327497	.	-	.	Parent=Os01t0388000-01
Chr01	irgsp1_rep	CDS	16327341	16327354	.	-	0	Parent=Os01t0388000-01
Chr01	irgsp1_rep	CDS	16326415	16326472	.	-	1	Parent=Os01t0388000-01
Chr01	irgsp1_rep	CDS	16325860	16326336	.	-	0	Parent=Os01t0388000-01
Chr01	irgsp1_rep	three_prime_UTR	16325492	16325859	.	-	.	Parent=Os01t0388000-01
Chr01	irgsp1_rep	mRNA	16327940	16328374	.	-	.	ID=Os01t0388101-00;Name=Os01t0388101-00;Locus_id=Os01g0388101;Note=Similar to CytoChrome P450 monooxygenase.;Transcript_evidence=ab initio prediction;ORF_evidence=B9X287 (UniProt);TENOR=Os01t0388101-00;KEGG=Os01t0388101-00
Chr01	irgsp1_rep	CDS	16327940	16328374	.	-	0	Parent=Os01t0388101-00
Chr01	irgsp1_rep	mRNA	16347484	16349469	.	-	.	ID=Os01t0388200-01;Name=Os01t0388200-01;Locus_id=Os01g0388200;Note=Conserved hypothetical protein.;Transcript_evidence=AK063630 (DDBJ%2C Best hit);ORF_evidence=B9FZE1 (UniProt);NIAS_FLcDNA=001-118-F08;TENOR=Os01t0388200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	16348861	16349469	.	-	.	Parent=Os01t0388200-01
Chr01	irgsp1_rep	CDS	16348750	16348860	.	-	0	Parent=Os01t0388200-01
Chr01	irgsp1_rep	CDS	16347846	16347986	.	-	0	Parent=Os01t0388200-01
Chr01	irgsp1_rep	three_prime_UTR	16347484	16347845	.	-	.	Parent=Os01t0388200-01
Chr01	irgsp1_rep	mRNA	16385640	16389527	.	+	.	ID=Os01t0388500-00;Name=Os01t0388500-00;Locus_id=Os01g0388500;Note=Similar to Fibronectin%2C type III-like fold.;Transcript_evidence=EU971695 (DDBJ);ORF_evidence=A2Q5Z3 (UniProt);InterPro=Protein of unknown function DUF3595 (IPR021999);TENOR=Os01t0388500-00;KEGG=Os01t0388500-00
Chr01	irgsp1_rep	CDS	16385640	16386020	.	+	0	Parent=Os01t0388500-00
Chr01	irgsp1_rep	CDS	16386106	16386247	.	+	0	Parent=Os01t0388500-00
Chr01	irgsp1_rep	CDS	16387430	16387574	.	+	2	Parent=Os01t0388500-00
Chr01	irgsp1_rep	CDS	16389372	16389507	.	+	1	Parent=Os01t0388500-00
Chr01	irgsp1_rep	three_prime_UTR	16389508	16389527	.	+	.	Parent=Os01t0388500-00
Chr01	irgsp1_rep	mRNA	16392304	16393382	.	-	.	ID=Os01t0388700-01;Name=Os01t0388700-01;Locus_id=Os01g0388700;Note=Protein of unknown function DUF679 family protein.;Transcript_evidence=AK071508 (DDBJ%2C Best hit);ORF_evidence=A2WQC8 (UniProt);InterPro=Protein of unknown function DUF679 (IPR007770);NIAS_FLcDNA=J023097E03;Expression=AK071508;TENOR=Os01t0388700-01;KEGG=Os01t0388700-01
Chr01	irgsp1_rep	five_prime_UTR	16393224	16393382	.	-	.	Parent=Os01t0388700-01
Chr01	irgsp1_rep	CDS	16392546	16393223	.	-	0	Parent=Os01t0388700-01
Chr01	irgsp1_rep	three_prime_UTR	16392304	16392545	.	-	.	Parent=Os01t0388700-01
Chr01	irgsp1_rep	mRNA	16415043	16416009	.	+	.	ID=Os01t0389200-01;Name=Os01t0389200-01;Locus_id=Os01g0389200;Note=Protein of unknown function DUF679 family protein.;Transcript_evidence=AK061076 (DDBJ%2C Best hit);ORF_evidence=A2ZTG5 (UniProt);InterPro=Protein of unknown function DUF679 (IPR007770);NIAS_FLcDNA=006-206-E03;Expression=AK061076;TENOR=Os01t0389200-01;KEGG=Os01t0389200-01
Chr01	irgsp1_rep	five_prime_UTR	16415043	16415068	.	+	.	Parent=Os01t0389200-01
Chr01	irgsp1_rep	CDS	16415069	16415863	.	+	0	Parent=Os01t0389200-01
Chr01	irgsp1_rep	three_prime_UTR	16415864	16416009	.	+	.	Parent=Os01t0389200-01
Chr01	irgsp1_rep	mRNA	16435858	16436778	.	+	.	ID=Os01t0389700-01;Name=Os01t0389700-01;Locus_id=Os01g0389700;Note=Protein of unknown function DUF679 family protein.;Transcript_evidence=AK108444 (DDBJ%2C Best hit);ORF_evidence=A2WQD0 (UniProt);InterPro=Protein of unknown function DUF679 (IPR007770);NIAS_FLcDNA=002-143-C02;Expression=AK108444;TENOR=Os01t0389700-01;KEGG=Os01t0389700-01
Chr01	irgsp1_rep	five_prime_UTR	16435858	16435922	.	+	.	Parent=Os01t0389700-01
Chr01	irgsp1_rep	CDS	16435923	16436645	.	+	0	Parent=Os01t0389700-01
Chr01	irgsp1_rep	three_prime_UTR	16436646	16436778	.	+	.	Parent=Os01t0389700-01
Chr01	irgsp1_rep	mRNA	16468782	16479809	.	-	.	ID=Os01t0390300-01;Name=Os01t0390300-01;Locus_id=Os01g0390300;Note=Nucleic acid-binding%2C OB-fold domain containing protein.;Transcript_evidence=AK111646 (DDBJ%2C Best hit);ORF_evidence=B7EA36 (UniProt);InterPro=Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=J013132G10;Expression=AK111646;TENOR=Os01t0390300-01;KEGG=Os01t0390300-01
Chr01	irgsp1_rep	five_prime_UTR	16479420	16479809	.	-	.	Parent=Os01t0390300-01
Chr01	irgsp1_rep	five_prime_UTR	16479166	16479306	.	-	.	Parent=Os01t0390300-01
Chr01	irgsp1_rep	five_prime_UTR	16478203	16478293	.	-	.	Parent=Os01t0390300-01
Chr01	irgsp1_rep	five_prime_UTR	16477932	16478087	.	-	.	Parent=Os01t0390300-01
Chr01	irgsp1_rep	five_prime_UTR	16475191	16475258	.	-	.	Parent=Os01t0390300-01
Chr01	irgsp1_rep	five_prime_UTR	16469868	16469874	.	-	.	Parent=Os01t0390300-01
Chr01	irgsp1_rep	CDS	16469724	16469867	.	-	0	Parent=Os01t0390300-01
Chr01	irgsp1_rep	CDS	16469360	16469633	.	-	0	Parent=Os01t0390300-01
Chr01	irgsp1_rep	CDS	16469167	16469269	.	-	2	Parent=Os01t0390300-01
Chr01	irgsp1_rep	CDS	16469019	16469055	.	-	1	Parent=Os01t0390300-01
Chr01	irgsp1_rep	three_prime_UTR	16468782	16469018	.	-	.	Parent=Os01t0390300-01
Chr01	irgsp1_rep	mRNA	16468660	16478533	.	-	.	ID=Os01t0390300-02;Name=Os01t0390300-02;Locus_id=Os01g0390300;Note=Nucleic acid-binding%2C OB-fold domain containing protein.;Transcript_evidence=AK103021 (DDBJ%2C Best hit);ORF_evidence=B7EA36 (UniProt);InterPro=Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=J033116P19;Expression=AK103021;TENOR=Os01t0390300-02;KEGG=Os01t0390300-02
Chr01	irgsp1_rep	five_prime_UTR	16478399	16478533	.	-	.	Parent=Os01t0390300-02
Chr01	irgsp1_rep	five_prime_UTR	16478203	16478293	.	-	.	Parent=Os01t0390300-02
Chr01	irgsp1_rep	five_prime_UTR	16477932	16478087	.	-	.	Parent=Os01t0390300-02
Chr01	irgsp1_rep	five_prime_UTR	16475191	16475258	.	-	.	Parent=Os01t0390300-02
Chr01	irgsp1_rep	five_prime_UTR	16469868	16469874	.	-	.	Parent=Os01t0390300-02
Chr01	irgsp1_rep	CDS	16469724	16469867	.	-	0	Parent=Os01t0390300-02
Chr01	irgsp1_rep	CDS	16469360	16469633	.	-	0	Parent=Os01t0390300-02
Chr01	irgsp1_rep	CDS	16469167	16469269	.	-	2	Parent=Os01t0390300-02
Chr01	irgsp1_rep	CDS	16469019	16469055	.	-	1	Parent=Os01t0390300-02
Chr01	irgsp1_rep	three_prime_UTR	16468660	16469018	.	-	.	Parent=Os01t0390300-02
Chr01	irgsp1_rep	mRNA	16480398	16494334	.	+	.	ID=Os01t0390400-01;Name=Os01t0390400-01;Locus_id=Os01g0390400;Note=Similar to Met-10+ like family protein.;Transcript_evidence=AK106834 (DDBJ%2C Best hit);ORF_evidence=NP_194464.3 (RefSeq);GO=Molecular Function: transferase activity (GO:0016740);InterPro=tRNA transferase Trm5/Tyw2 (IPR003402);NIAS_FLcDNA=002-116-G05;Expression=AK106834;TENOR=Os01t0390400-01;KEGG=Os01t0390400-01
Chr01	irgsp1_rep	five_prime_UTR	16480398	16480448	.	+	.	Parent=Os01t0390400-01
Chr01	irgsp1_rep	CDS	16480449	16481231	.	+	0	Parent=Os01t0390400-01
Chr01	irgsp1_rep	CDS	16481719	16481817	.	+	0	Parent=Os01t0390400-01
Chr01	irgsp1_rep	CDS	16483250	16483369	.	+	0	Parent=Os01t0390400-01
Chr01	irgsp1_rep	CDS	16483440	16483606	.	+	0	Parent=Os01t0390400-01
Chr01	irgsp1_rep	CDS	16490741	16490814	.	+	1	Parent=Os01t0390400-01
Chr01	irgsp1_rep	CDS	16491634	16491776	.	+	2	Parent=Os01t0390400-01
Chr01	irgsp1_rep	CDS	16492097	16492208	.	+	0	Parent=Os01t0390400-01
Chr01	irgsp1_rep	CDS	16493256	16493371	.	+	2	Parent=Os01t0390400-01
Chr01	irgsp1_rep	CDS	16493469	16493615	.	+	0	Parent=Os01t0390400-01
Chr01	irgsp1_rep	three_prime_UTR	16493616	16494334	.	+	.	Parent=Os01t0390400-01
Chr01	irgsp1_rep	mRNA	16480403	16484091	.	+	.	ID=Os01t0390400-02;Name=Os01t0390400-02;Locus_id=Os01g0390400;Note=Nucleic acid-binding OB-fold domain containing protein.;Transcript_evidence=AK101833 (DDBJ%2C Best hit);ORF_evidence=B9EX21 (UniProt);NIAS_FLcDNA=J033069B09;TENOR=Os01t0390400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	16480403	16480448	.	+	.	Parent=Os01t0390400-02
Chr01	irgsp1_rep	CDS	16480449	16481231	.	+	0	Parent=Os01t0390400-02
Chr01	irgsp1_rep	CDS	16481719	16481817	.	+	0	Parent=Os01t0390400-02
Chr01	irgsp1_rep	CDS	16482753	16482805	.	+	0	Parent=Os01t0390400-02
Chr01	irgsp1_rep	CDS	16483250	16483256	.	+	1	Parent=Os01t0390400-02
Chr01	irgsp1_rep	three_prime_UTR	16483257	16483369	.	+	.	Parent=Os01t0390400-02
Chr01	irgsp1_rep	three_prime_UTR	16483440	16484091	.	+	.	Parent=Os01t0390400-02
Chr01	irgsp1_rep	mRNA	16480404	16493693	.	+	.	ID=Os01t0390400-03;Name=Os01t0390400-03;Locus_id=Os01g0390400;Note=Nucleic acid-binding OB-fold domain containing protein.;Transcript_evidence=AK067433 (DDBJ%2C Best hit);ORF_evidence=Q5VNJ0 (UniProt);NIAS_FLcDNA=J013102N19;Expression=AK067433;TENOR=Os01t0390400-03;KEGG=Os01t0390400-03
Chr01	irgsp1_rep	five_prime_UTR	16480404	16480448	.	+	.	Parent=Os01t0390400-03
Chr01	irgsp1_rep	CDS	16480449	16481231	.	+	0	Parent=Os01t0390400-03
Chr01	irgsp1_rep	CDS	16481719	16481817	.	+	0	Parent=Os01t0390400-03
Chr01	irgsp1_rep	CDS	16482753	16482805	.	+	0	Parent=Os01t0390400-03
Chr01	irgsp1_rep	CDS	16483250	16483256	.	+	1	Parent=Os01t0390400-03
Chr01	irgsp1_rep	three_prime_UTR	16483257	16483369	.	+	.	Parent=Os01t0390400-03
Chr01	irgsp1_rep	three_prime_UTR	16483440	16483606	.	+	.	Parent=Os01t0390400-03
Chr01	irgsp1_rep	three_prime_UTR	16490741	16490814	.	+	.	Parent=Os01t0390400-03
Chr01	irgsp1_rep	three_prime_UTR	16491634	16491776	.	+	.	Parent=Os01t0390400-03
Chr01	irgsp1_rep	three_prime_UTR	16492097	16492208	.	+	.	Parent=Os01t0390400-03
Chr01	irgsp1_rep	three_prime_UTR	16493256	16493371	.	+	.	Parent=Os01t0390400-03
Chr01	irgsp1_rep	three_prime_UTR	16493469	16493693	.	+	.	Parent=Os01t0390400-03
Chr01	irgsp1_rep	mRNA	16495359	16503329	.	+	.	ID=Os01t0390600-01;Name=Os01t0390600-01;Locus_id=Os01g0390600;Oryzabase Gene Name Synonym(s)=Tetratricopeptide-like helical;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK119355 (DDBJ%2C Best hit);ORF_evidence=NP_001148193.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-131-F11;Oryzabase=21685;Expression=AK119355;TENOR=Os01t0390600-01;KEGG=Os01t0390600-01
Chr01	irgsp1_rep	five_prime_UTR	16495359	16495522	.	+	.	Parent=Os01t0390600-01
Chr01	irgsp1_rep	CDS	16495523	16497496	.	+	0	Parent=Os01t0390600-01
Chr01	irgsp1_rep	three_prime_UTR	16498330	16498448	.	+	.	Parent=Os01t0390600-01
Chr01	irgsp1_rep	three_prime_UTR	16498549	16498635	.	+	.	Parent=Os01t0390600-01
Chr01	irgsp1_rep	three_prime_UTR	16502929	16503329	.	+	.	Parent=Os01t0390600-01
Chr01	irgsp1_rep	mRNA	16511620	16518660	.	-	.	ID=Os01t0390900-01;Name=Os01t0390900-01;Locus_id=Os01g0390900;Oryzabase Gene Symbol Synonym(s)=OsDsPTP1%2C OsPP6;Oryzabase Gene Name Synonym(s)=Protein phosphatase 6;Note=Similar to Dual-specificity protein phosphatase-like protein.;Transcript_evidence=AK103881 (DDBJ%2C Best hit);ORF_evidence=B6SJK1 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Biological Process: dephosphorylation (GO:0016311),Molecular Function: protein tyrosine/serine/threonine phosphatase activity (GO:0008138),Molecular Function: phosphatase activity (GO:0016791);InterPro=Dual specificity phosphatase%2C catalytic domain (IPR000340),Protein-tyrosine/Dual-specificity phosphatase (IPR000387),Protein-tyrosine phosphatase%2C catalytic (IPR003595),Dual specificity phosphatase%2C subgroup%2C catalytic domain (IPR020422);NIAS_FLcDNA=J033149O18;Oryzabase=10264;Expression=AK103881;TENOR=Os01t0390900-01;KEGG=Os01t0390900-01 (EC:3.1.3.16%2C EC:3.1.3.48)
Chr01	irgsp1_rep	five_prime_UTR	16518561	16518660	.	-	.	Parent=Os01t0390900-01
Chr01	irgsp1_rep	CDS	16518405	16518560	.	-	0	Parent=Os01t0390900-01
Chr01	irgsp1_rep	CDS	16517740	16517875	.	-	0	Parent=Os01t0390900-01
Chr01	irgsp1_rep	CDS	16516431	16516551	.	-	2	Parent=Os01t0390900-01
Chr01	irgsp1_rep	CDS	16512697	16512842	.	-	1	Parent=Os01t0390900-01
Chr01	irgsp1_rep	CDS	16511819	16511859	.	-	2	Parent=Os01t0390900-01
Chr01	irgsp1_rep	three_prime_UTR	16511620	16511818	.	-	.	Parent=Os01t0390900-01
Chr01	irgsp1_rep	mRNA	16511620	16515893	.	-	.	ID=Os01t0390900-02;Name=Os01t0390900-02;Locus_id=Os01g0390900;Oryzabase Gene Symbol Synonym(s)=OsDsPTP1%2C OsPP6;Oryzabase Gene Name Synonym(s)=Protein phosphatase 6;Note=Similar to Dual specificity protein phosphatase 9.;Transcript_evidence=AK102282 (DDBJ%2C Best hit);ORF_evidence=B6SJK1 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Molecular Function: protein tyrosine/serine/threonine phosphatase activity (GO:0008138);InterPro=Dual specificity phosphatase%2C catalytic domain (IPR000340),Dual specificity phosphatase%2C subgroup%2C catalytic domain (IPR020422);NIAS_FLcDNA=J033089G06;Oryzabase=10264;Expression=AK102282;TENOR=Os01t0390900-02;KEGG=Os01t0390900-02
Chr01	irgsp1_rep	five_prime_UTR	16512851	16515893	.	-	.	Parent=Os01t0390900-02
Chr01	irgsp1_rep	CDS	16512697	16512850	.	-	0	Parent=Os01t0390900-02
Chr01	irgsp1_rep	CDS	16511819	16511859	.	-	2	Parent=Os01t0390900-02
Chr01	irgsp1_rep	three_prime_UTR	16511620	16511818	.	-	.	Parent=Os01t0390900-02
Chr01	irgsp1_rep	mRNA	16540668	16542320	.	-	.	ID=Os01t0391100-01;Name=Os01t0391100-01;Locus_id=Os01g0391100;Note=Hypothetical gene.;Transcript_evidence=AK063499 (DDBJ%2C Best hit);ORF_evidence=B7F9B4 (UniProt);NIAS_FLcDNA=001-116-E02;Expression=AK063499;TENOR=Os01t0391100-01;KEGG=Os01t0391100-01
Chr01	irgsp1_rep	five_prime_UTR	16542248	16542320	.	-	.	Parent=Os01t0391100-01
Chr01	irgsp1_rep	CDS	16541699	16542247	.	-	0	Parent=Os01t0391100-01
Chr01	irgsp1_rep	three_prime_UTR	16540668	16541698	.	-	.	Parent=Os01t0391100-01
Chr01	irgsp1_rep	mRNA	16536661	16540678	.	-	.	ID=Os01t0391100-02;Name=Os01t0391100-02;Locus_id=Os01g0391100;Note=Hypothetical protein.;Transcript_evidence=AK121200 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023087I02;TENOR=Os01t0391100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	16540226	16540678	.	-	0	Parent=Os01t0391100-02
Chr01	irgsp1_rep	three_prime_UTR	16540137	16540225	.	-	.	Parent=Os01t0391100-02
Chr01	irgsp1_rep	three_prime_UTR	16539710	16539816	.	-	.	Parent=Os01t0391100-02
Chr01	irgsp1_rep	three_prime_UTR	16536661	16539491	.	-	.	Parent=Os01t0391100-02
Chr01	irgsp1_rep	mRNA	16539014	16540616	.	-	.	ID=Os01t0391100-03;Name=Os01t0391100-03;Locus_id=Os01g0391100;Note=Hypothetical protein.;Transcript_evidence=AK108533 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-144-C05;TENOR=Os01t0391100-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	16540616	16540616	.	-	.	Parent=Os01t0391100-03
Chr01	irgsp1_rep	CDS	16540226	16540615	.	-	0	Parent=Os01t0391100-03
Chr01	irgsp1_rep	three_prime_UTR	16540137	16540225	.	-	.	Parent=Os01t0391100-03
Chr01	irgsp1_rep	three_prime_UTR	16539710	16539816	.	-	.	Parent=Os01t0391100-03
Chr01	irgsp1_rep	three_prime_UTR	16539014	16539491	.	-	.	Parent=Os01t0391100-03
Chr01	irgsp1_rep	mRNA	16588798	16597542	.	+	.	ID=Os01t0391500-01;Name=Os01t0391500-01;Locus_id=Os01g0391500;Note=Hypothetical conserved gene.;Transcript_evidence=AK241476 (DDBJ%2C Best hit);ORF_evidence=NP_001173767.1 (RefSeq);NIAS_FLcDNA=J065165J11;TENOR=Os01t0391500-01;KEGG=Os01t0391500-01
Chr01	irgsp1_rep	five_prime_UTR	16588798	16589635	.	+	.	Parent=Os01t0391500-01
Chr01	irgsp1_rep	CDS	16589636	16589728	.	+	0	Parent=Os01t0391500-01
Chr01	irgsp1_rep	CDS	16590027	16590111	.	+	0	Parent=Os01t0391500-01
Chr01	irgsp1_rep	CDS	16590204	16590338	.	+	2	Parent=Os01t0391500-01
Chr01	irgsp1_rep	CDS	16590444	16590466	.	+	2	Parent=Os01t0391500-01
Chr01	irgsp1_rep	three_prime_UTR	16590467	16590549	.	+	.	Parent=Os01t0391500-01
Chr01	irgsp1_rep	three_prime_UTR	16590872	16590902	.	+	.	Parent=Os01t0391500-01
Chr01	irgsp1_rep	three_prime_UTR	16590979	16591084	.	+	.	Parent=Os01t0391500-01
Chr01	irgsp1_rep	three_prime_UTR	16591636	16591702	.	+	.	Parent=Os01t0391500-01
Chr01	irgsp1_rep	three_prime_UTR	16591985	16592055	.	+	.	Parent=Os01t0391500-01
Chr01	irgsp1_rep	three_prime_UTR	16592842	16592934	.	+	.	Parent=Os01t0391500-01
Chr01	irgsp1_rep	three_prime_UTR	16594563	16594630	.	+	.	Parent=Os01t0391500-01
Chr01	irgsp1_rep	three_prime_UTR	16595244	16595304	.	+	.	Parent=Os01t0391500-01
Chr01	irgsp1_rep	three_prime_UTR	16595651	16595749	.	+	.	Parent=Os01t0391500-01
Chr01	irgsp1_rep	three_prime_UTR	16595826	16595923	.	+	.	Parent=Os01t0391500-01
Chr01	irgsp1_rep	three_prime_UTR	16597353	16597542	.	+	.	Parent=Os01t0391500-01
Chr01	irgsp1_rep	mRNA	16609803	16613226	.	-	.	ID=Os01t0391600-00;Name=Os01t0391600-00;Locus_id=Os01g0391600;Note=Conserved hypothetical protein.;Transcript_evidence=CT837658 (DDBJ%2C Best hit);ORF_evidence=Q8S671 (UniProt);TENOR=Os01t0391600-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	16612788	16613226	.	-	.	Parent=Os01t0391600-00
Chr01	irgsp1_rep	five_prime_UTR	16612099	16612510	.	-	.	Parent=Os01t0391600-00
Chr01	irgsp1_rep	CDS	16611937	16612098	.	-	0	Parent=Os01t0391600-00
Chr01	irgsp1_rep	three_prime_UTR	16611685	16611936	.	-	.	Parent=Os01t0391600-00
Chr01	irgsp1_rep	three_prime_UTR	16611222	16611659	.	-	.	Parent=Os01t0391600-00
Chr01	irgsp1_rep	three_prime_UTR	16609863	16610316	.	-	.	Parent=Os01t0391600-00
Chr01	irgsp1_rep	three_prime_UTR	16609803	16609853	.	-	.	Parent=Os01t0391600-00
Chr01	irgsp1_rep	mRNA	16634082	16636357	.	-	.	ID=Os01t0391800-01;Name=Os01t0391800-01;Locus_id=Os01g0391800;Note=Conserved hypothetical protein.;Transcript_evidence=AK106849 (DDBJ%2C Best hit);ORF_evidence=C8TFB7 (UniProt);NIAS_FLcDNA=002-118-A10;TENOR=Os01t0391800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	16636272	16636357	.	-	.	Parent=Os01t0391800-01
Chr01	irgsp1_rep	CDS	16636080	16636271	.	-	0	Parent=Os01t0391800-01
Chr01	irgsp1_rep	three_prime_UTR	16635289	16636079	.	-	.	Parent=Os01t0391800-01
Chr01	irgsp1_rep	three_prime_UTR	16634979	16635113	.	-	.	Parent=Os01t0391800-01
Chr01	irgsp1_rep	three_prime_UTR	16634596	16634727	.	-	.	Parent=Os01t0391800-01
Chr01	irgsp1_rep	three_prime_UTR	16634082	16634426	.	-	.	Parent=Os01t0391800-01
Chr01	irgsp1_rep	mRNA	16641317	16641379	.	-	.	ID=Os01t0391951-00;Name=Os01t0391951-00;Locus_id=Os01g0391951;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0391951-00
Chr01	irgsp1_rep	exon	16641317	16641379	.	-	.	Parent=Os01t0391951-00
Chr01	irgsp1_rep	mRNA	16659734	16664415	.	+	.	ID=Os01t0392100-01;Name=Os01t0392100-01;Locus_id=Os01g0392100;Oryzabase Gene Name Synonym(s)=mesocotyl length candidate gene;Note=Conserved hypothetical protein.;Transcript_evidence=AK107724 (DDBJ%2C Best hit);ORF_evidence=NP_001144394.1 (RefSeq);NIAS_FLcDNA=002-132-E12;Oryzabase=20300;Expression=AK107724;TENOR=Os01t0392100-01;KEGG=Os01t0392100-01
Chr01	irgsp1_rep	five_prime_UTR	16659734	16659816	.	+	.	Parent=Os01t0392100-01
Chr01	irgsp1_rep	CDS	16659817	16660030	.	+	0	Parent=Os01t0392100-01
Chr01	irgsp1_rep	CDS	16662796	16662947	.	+	2	Parent=Os01t0392100-01
Chr01	irgsp1_rep	three_prime_UTR	16662948	16662970	.	+	.	Parent=Os01t0392100-01
Chr01	irgsp1_rep	three_prime_UTR	16664094	16664415	.	+	.	Parent=Os01t0392100-01
Chr01	irgsp1_rep	mRNA	16693961	16700566	.	+	.	ID=Os01t0392600-01;Name=Os01t0392600-01;Locus_id=Os01g0392600;Note=Conserved hypothetical protein.;Transcript_evidence=AK063242 (DDBJ%2C Best hit);ORF_evidence=NP_001067531.1 (RefSeq);NIAS_FLcDNA=001-112-G05;TENOR=Os01t0392600-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	16693961	16694168	.	+	.	Parent=Os01t0392600-01
Chr01	irgsp1_rep	CDS	16694169	16694197	.	+	0	Parent=Os01t0392600-01
Chr01	irgsp1_rep	CDS	16699649	16699844	.	+	1	Parent=Os01t0392600-01
Chr01	irgsp1_rep	three_prime_UTR	16699845	16700079	.	+	.	Parent=Os01t0392600-01
Chr01	irgsp1_rep	three_prime_UTR	16700232	16700566	.	+	.	Parent=Os01t0392600-01
Chr01	irgsp1_rep	mRNA	16696790	16700454	.	+	.	ID=Os01t0392600-02;Name=Os01t0392600-02;Locus_id=Os01g0392600;Note=Hypothetical protein.;Transcript_evidence=AK067469 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013105E17;TENOR=Os01t0392600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	16696790	16699363	.	+	.	Parent=Os01t0392600-02
Chr01	irgsp1_rep	CDS	16699364	16699672	.	+	0	Parent=Os01t0392600-02
Chr01	irgsp1_rep	three_prime_UTR	16699673	16700454	.	+	.	Parent=Os01t0392600-02
Chr01	irgsp1_rep	mRNA	16706252	16709603	.	+	.	ID=Os01t0392800-01;Name=Os01t0392800-01;Locus_id=Os01g0392800;Note=Similar to DET1-like protein.;Transcript_evidence=AK072999 (DDBJ%2C Best hit);ORF_evidence=D0EW63 (UniProt);NIAS_FLcDNA=J023149N01;TENOR=Os01t0392800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	16706252	16706935	.	+	.	Parent=Os01t0392800-01
Chr01	irgsp1_rep	five_prime_UTR	16707422	16707519	.	+	.	Parent=Os01t0392800-01
Chr01	irgsp1_rep	five_prime_UTR	16707708	16708707	.	+	.	Parent=Os01t0392800-01
Chr01	irgsp1_rep	CDS	16708708	16708941	.	+	0	Parent=Os01t0392800-01
Chr01	irgsp1_rep	three_prime_UTR	16708942	16709603	.	+	.	Parent=Os01t0392800-01
Chr01	irgsp1_rep	mRNA	16716670	16719374	.	+	.	ID=Os01t0393000-01;Name=Os01t0393000-01;Locus_id=Os01g0393000;Note=Conserved hypothetical protein.;Transcript_evidence=AK072836 (DDBJ%2C Best hit);ORF_evidence=Q5VNK3 (UniProt);NIAS_FLcDNA=J023139G06;Expression=AK072836;TENOR=Os01t0393000-01;KEGG=Os01t0393000-01
Chr01	irgsp1_rep	five_prime_UTR	16716670	16717108	.	+	.	Parent=Os01t0393000-01
Chr01	irgsp1_rep	five_prime_UTR	16717220	16717234	.	+	.	Parent=Os01t0393000-01
Chr01	irgsp1_rep	CDS	16717235	16717302	.	+	0	Parent=Os01t0393000-01
Chr01	irgsp1_rep	CDS	16717750	16717950	.	+	1	Parent=Os01t0393000-01
Chr01	irgsp1_rep	CDS	16718037	16718088	.	+	1	Parent=Os01t0393000-01
Chr01	irgsp1_rep	three_prime_UTR	16718089	16718270	.	+	.	Parent=Os01t0393000-01
Chr01	irgsp1_rep	three_prime_UTR	16718349	16718388	.	+	.	Parent=Os01t0393000-01
Chr01	irgsp1_rep	three_prime_UTR	16719069	16719374	.	+	.	Parent=Os01t0393000-01
Chr01	irgsp1_rep	mRNA	16716894	16719360	.	+	.	ID=Os01t0393000-02;Name=Os01t0393000-02;Locus_id=Os01g0393000;Note=Hypothetical conserved gene.;Transcript_evidence=AK066701 (DDBJ%2C Best hit);ORF_evidence=Q5VNK3 (UniProt);NIAS_FLcDNA=J013074G17;Expression=AK066701;TENOR=Os01t0393000-02;KEGG=Os01t0393000-02
Chr01	irgsp1_rep	five_prime_UTR	16716894	16717108	.	+	.	Parent=Os01t0393000-02
Chr01	irgsp1_rep	five_prime_UTR	16717220	16717234	.	+	.	Parent=Os01t0393000-02
Chr01	irgsp1_rep	CDS	16717235	16717302	.	+	0	Parent=Os01t0393000-02
Chr01	irgsp1_rep	CDS	16717732	16717950	.	+	1	Parent=Os01t0393000-02
Chr01	irgsp1_rep	CDS	16718037	16718088	.	+	1	Parent=Os01t0393000-02
Chr01	irgsp1_rep	three_prime_UTR	16718089	16718270	.	+	.	Parent=Os01t0393000-02
Chr01	irgsp1_rep	three_prime_UTR	16718349	16718388	.	+	.	Parent=Os01t0393000-02
Chr01	irgsp1_rep	three_prime_UTR	16719069	16719360	.	+	.	Parent=Os01t0393000-02
Chr01	irgsp1_rep	mRNA	16720752	16722617	.	-	.	ID=Os01t0393100-01;Name=Os01t0393100-01;Locus_id=Os01g0393100;CGSNL Gene Symbol=NAC26;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 26;Oryzabase Gene Symbol Synonym(s)=ONAC026%2C ONAC26%2C OsEnS-8%2C DLN11%2C OsDLN11;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 026%2C NAC domain-containing protein 26%2C endosperm-specific gene 8%2C DLN repressor 11%2C DLN motif protein 11;Note=Similar to CUC2.;Transcript_evidence=AK107407 (DDBJ%2C Best hit);ORF_evidence=A2ZVS5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=002-127-E05;Oryzabase=11472;Expression=AK107407;TENOR=Os01t0393100-01;KEGG=Os01t0393100-01
Chr01	irgsp1_rep	five_prime_UTR	16722539	16722617	.	-	.	Parent=Os01t0393100-01
Chr01	irgsp1_rep	five_prime_UTR	16722353	16722399	.	-	.	Parent=Os01t0393100-01
Chr01	irgsp1_rep	CDS	16722169	16722352	.	-	0	Parent=Os01t0393100-01
Chr01	irgsp1_rep	CDS	16721330	16722070	.	-	2	Parent=Os01t0393100-01
Chr01	irgsp1_rep	CDS	16721222	16721283	.	-	2	Parent=Os01t0393100-01
Chr01	irgsp1_rep	three_prime_UTR	16720752	16721221	.	-	.	Parent=Os01t0393100-01
Chr01	irgsp1_rep	mRNA	16720752	16722617	.	-	.	ID=Os01t0393100-02;Name=Os01t0393100-02;Locus_id=Os01g0393100;RAP-DB Gene Symbol Synonym(s)=OsNAC26;CGSNL Gene Symbol=NAC26;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 26;Oryzabase Gene Symbol Synonym(s)=ONAC026%2C ONAC26%2C OsEnS-8%2C DLN11%2C OsDLN11;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 026%2C NAC domain-containing protein 26%2C endosperm-specific gene 8%2C DLN repressor 11%2C DLN motif protein 11;Note=NAC transcription factor%2C Regulation of starch and storage protein synthesis;Transcript_evidence=Inferred from literature;ORF_evidence=A2WQE4 (indica);GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=NAC domain superfamily (IPR036093),NAC domain (IPR003441);Manual Curation=September 29%2C 2020;Literature_PMID=32989010;Oryzabase=11472;Subcellular location=nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	16722539	16722617	.	-	.	Parent=Os01t0393100-02
Chr01	irgsp1_rep	five_prime_UTR	16722353	16722399	.	-	.	Parent=Os01t0393100-02
Chr01	irgsp1_rep	CDS	16722169	16722352	.	-	0	Parent=Os01t0393100-02
Chr01	irgsp1_rep	CDS	16721253	16722070	.	-	2	Parent=Os01t0393100-02
Chr01	irgsp1_rep	three_prime_UTR	16720752	16721252	.	-	.	Parent=Os01t0393100-02
Chr01	irgsp1_rep	mRNA	16721664	16722131	.	+	.	ID=Os01t0393200-00;Name=Os01t0393200-00;Locus_id=Os01g0393200;Note=Conserved hypothetical protein.;Transcript_evidence=FM878729 (DDBJ);ORF_evidence=C0PHZ5 (UniProt);TENOR=Os01t0393200-00
Chr01	irgsp1_rep	CDS	16721664	16722131	.	+	0	Parent=Os01t0393200-00
Chr01	irgsp1_rep	mRNA	16730058	16731058	.	-	.	ID=Os01t0393300-00;Name=Os01t0393300-00;Locus_id=Os01g0393300;Note=Similar to H0306B06.1 protein.;Transcript_evidence=AK061559 (DDBJ%2C Secondary hit);ORF_evidence=Q01IF4 (UniProt);TENOR=Os01t0393300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	16730940	16731058	.	-	.	Parent=Os01t0393300-00
Chr01	irgsp1_rep	CDS	16730869	16730939	.	-	0	Parent=Os01t0393300-00
Chr01	irgsp1_rep	CDS	16730634	16730781	.	-	1	Parent=Os01t0393300-00
Chr01	irgsp1_rep	CDS	16730058	16730597	.	-	0	Parent=Os01t0393300-00
Chr01	irgsp1_rep	mRNA	16731979	16733411	.	+	.	ID=Os01t0393400-00;Name=Os01t0393400-00;Locus_id=Os01g0393400;Note=Similar to MDR-like ABC transporter.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8GU69 (UniProt);TENOR=Os01t0393400-00;KEGG=Os01t0393400-00
Chr01	irgsp1_rep	CDS	16731979	16732093	.	+	0	Parent=Os01t0393400-00
Chr01	irgsp1_rep	CDS	16732172	16732373	.	+	2	Parent=Os01t0393400-00
Chr01	irgsp1_rep	CDS	16733105	16733411	.	+	1	Parent=Os01t0393400-00
Chr01	irgsp1_rep	mRNA	16982700	16982963	.	+	.	ID=Os01t0444100-00;Name=Os01t0444100-00;Locus_id=Os01g0444100;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10J72 (UniProt);TENOR=Os01t0444100-00
Chr01	irgsp1_rep	CDS	16982700	16982963	.	+	0	Parent=Os01t0444100-00
Chr01	irgsp1_rep	mRNA	16928574	16929545	.	+	.	ID=Os01t0495200-00;Name=Os01t0495200-00;Locus_id=Os01g0495200;Oryzabase Gene Symbol Synonym(s)=OsTBL25%2C TBL25;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 25;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001043121.1 (RefSeq);Oryzabase=21480;TENOR=Os01t0495200-00;KEGG=Os01t0495200-00
Chr01	irgsp1_rep	CDS	16928574	16929019	.	+	0	Parent=Os01t0495200-00
Chr01	irgsp1_rep	CDS	16929152	16929545	.	+	1	Parent=Os01t0495200-00
Chr01	irgsp1_rep	mRNA	16980463	16981993	.	-	.	ID=Os01t0495701-00;Name=Os01t0495701-00;Locus_id=Os01g0495701;Note=Hypothetical conserved gene.;Transcript_evidence=AK240972 (DDBJ%2C Secondary hit);ORF_evidence=NP_001173484.1 (RefSeq);TENOR=Os01t0495701-00;KEGG=Os01t0495701-00
Chr01	irgsp1_rep	five_prime_UTR	16980714	16981993	.	-	.	Parent=Os01t0495701-00
Chr01	irgsp1_rep	CDS	16980534	16980713	.	-	0	Parent=Os01t0495701-00
Chr01	irgsp1_rep	three_prime_UTR	16980463	16980533	.	-	.	Parent=Os01t0495701-00
Chr01	irgsp1_rep	mRNA	17012671	17016236	.	+	.	ID=Os01t0495900-01;Name=Os01t0495900-01;Locus_id=Os01g0495900;RAP-DB Gene Symbol Synonym(s)=OsCAF1;RAP-DB Gene Name Synonym(s)=CRS2-associated factor 1;CGSNL Gene Symbol=CAF1;CGSNL Gene Name=CRS2-ASSOCIATED FACTOR 1;Oryzabase Gene Symbol Synonym(s)=OsCAF1;Oryzabase Gene Name Synonym(s)=CRS2-associated factor 1;Note=Chloroplast RNA splicing and ribosome maturation (CRM) domain containing protein%2C Splicing of group IIA and group IIB introns%2C  Regulation of chloroplast development;Transcript_evidence=AK065221;ORF_evidence=Q5VMQ5;GO=Molecular Function: RNA binding (GO:0003723);InterPro=YhbY-like superfamily (IPR035920),RNA-binding%2C CRM domain (IPR001890);NIAS_FLcDNA=J013002G18;Manual Curation=April 27%2C 2020;Literature_PMID=31500108;Oryzabase=23404;Expression=AK065221;TENOR=Os01t0495900-01;KEGG=Os01t0495900-01;Subcellular location=chloroplast (GO:0009507)
Chr01	irgsp1_rep	five_prime_UTR	17012671	17012689	.	+	.	Parent=Os01t0495900-01
Chr01	irgsp1_rep	CDS	17012690	17013308	.	+	0	Parent=Os01t0495900-01
Chr01	irgsp1_rep	CDS	17013926	17014053	.	+	2	Parent=Os01t0495900-01
Chr01	irgsp1_rep	CDS	17014316	17014541	.	+	0	Parent=Os01t0495900-01
Chr01	irgsp1_rep	CDS	17014925	17015052	.	+	2	Parent=Os01t0495900-01
Chr01	irgsp1_rep	CDS	17015125	17016129	.	+	0	Parent=Os01t0495900-01
Chr01	irgsp1_rep	three_prime_UTR	17016130	17016236	.	+	.	Parent=Os01t0495900-01
Chr01	irgsp1_rep	mRNA	17066937	17070813	.	-	.	ID=Os01t0496900-01;Name=Os01t0496900-01;Locus_id=Os01g0496900;Note=Conserved hypothetical protein.;Transcript_evidence=AK069894 (DDBJ%2C Best hit);ORF_evidence=A2ZTI2 (UniProt);NIAS_FLcDNA=J023037A04;TENOR=Os01t0496900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	17070796	17070813	.	-	.	Parent=Os01t0496900-01
Chr01	irgsp1_rep	CDS	17070289	17070795	.	-	0	Parent=Os01t0496900-01
Chr01	irgsp1_rep	three_prime_UTR	17069175	17070288	.	-	.	Parent=Os01t0496900-01
Chr01	irgsp1_rep	three_prime_UTR	17068828	17068943	.	-	.	Parent=Os01t0496900-01
Chr01	irgsp1_rep	three_prime_UTR	17066937	17067704	.	-	.	Parent=Os01t0496900-01
Chr01	irgsp1_rep	mRNA	17105524	17106678	.	-	.	ID=Os01t0497400-00;Name=Os01t0497400-00;Locus_id=Os01g0497400;CGSNL Gene Symbol=ANN1;CGSNL Gene Name=ANNEXIN 1;Oryzabase Gene Symbol Synonym(s)=OsANN1;Oryzabase Gene Name Synonym(s)=Annexin 1;Note=Annexin domain containing protein.;Transcript_evidence=GQ284841 (DDBJ%2C Best hit);ORF_evidence=Q5VNH3 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509),Molecular Function: calcium-dependent phospholipid binding (GO:0005544);InterPro=Annexin (IPR001464),Annexin%2C plant (IPR009118),Annexin repeat (IPR018502);Oryzabase=15464;TENOR=Os01t0497400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	17106655	17106678	.	-	0	Parent=Os01t0497400-00
Chr01	irgsp1_rep	CDS	17106405	17106542	.	-	0	Parent=Os01t0497400-00
Chr01	irgsp1_rep	CDS	17106013	17106225	.	-	0	Parent=Os01t0497400-00
Chr01	irgsp1_rep	CDS	17105839	17105931	.	-	0	Parent=Os01t0497400-00
Chr01	irgsp1_rep	CDS	17105524	17105727	.	-	0	Parent=Os01t0497400-00
Chr01	irgsp1_rep	mRNA	17155310	17157677	.	+	.	ID=Os01t0498200-01;Name=Os01t0498200-01;Locus_id=Os01g0498200;Note=Conserved hypothetical protein.;Transcript_evidence=AK062264 (DDBJ%2C Best hit);ORF_evidence=Q5VNI7 (UniProt);NIAS_FLcDNA=001-047-H09;Expression=AK062264;TENOR=Os01t0498200-01;KEGG=Os01t0498200-01
Chr01	irgsp1_rep	five_prime_UTR	17155310	17155311	.	+	.	Parent=Os01t0498200-01
Chr01	irgsp1_rep	CDS	17155312	17155782	.	+	0	Parent=Os01t0498200-01
Chr01	irgsp1_rep	CDS	17155903	17156051	.	+	0	Parent=Os01t0498200-01
Chr01	irgsp1_rep	CDS	17157071	17157213	.	+	1	Parent=Os01t0498200-01
Chr01	irgsp1_rep	CDS	17157325	17157410	.	+	2	Parent=Os01t0498200-01
Chr01	irgsp1_rep	three_prime_UTR	17157411	17157677	.	+	.	Parent=Os01t0498200-01
Chr01	irgsp1_rep	mRNA	17159733	17161535	.	-	.	ID=Os01t0498300-01;Name=Os01t0498300-01;Locus_id=Os01g0498300;Note=Glycosyltransferase AER61%2C uncharacterized domain containing protein.;Transcript_evidence=AK069247 (DDBJ%2C Best hit);ORF_evidence=B6SS11 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyltransferase AER61%2C uncharacterised (IPR007657);NIAS_FLcDNA=J023019B01;Oryzabase=15231;Expression=AK069247;TENOR=Os01t0498300-01;KEGG=Os01t0498300-01
Chr01	irgsp1_rep	five_prime_UTR	17161519	17161535	.	-	.	Parent=Os01t0498300-01
Chr01	irgsp1_rep	CDS	17159908	17161518	.	-	0	Parent=Os01t0498300-01
Chr01	irgsp1_rep	three_prime_UTR	17159733	17159907	.	-	.	Parent=Os01t0498300-01
Chr01	irgsp1_rep	mRNA	17177800	17180448	.	+	.	ID=Os01t0498802-01;Name=Os01t0498802-01;Locus_id=Os01g0498802;Note=Non-protein coding transcript.;Transcript_evidence=AK241354 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065150I02;TENOR=Os01t0498802-01
Chr01	irgsp1_rep	exon	17177800	17178247	.	+	.	Parent=Os01t0498802-01
Chr01	irgsp1_rep	exon	17179343	17179429	.	+	.	Parent=Os01t0498802-01
Chr01	irgsp1_rep	exon	17179882	17180448	.	+	.	Parent=Os01t0498802-01
Chr01	irgsp1_rep	mRNA	17210257	17218276	.	-	.	ID=Os01t0499300-01;Name=Os01t0499300-01;Locus_id=Os01g0499300;Note=Mov34/MPN/PAD-1 family protein.;Transcript_evidence=AK102705 (DDBJ%2C Best hit);ORF_evidence=NP_001150680.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Mov34/MPN/PAD-1 (IPR000555);NIAS_FLcDNA=J033103P11;Expression=AK102705;TENOR=Os01t0499300-01;KEGG=Os01t0499300-01 (EC:3.1.2.15)
Chr01	irgsp1_rep	five_prime_UTR	17217861	17218276	.	-	.	Parent=Os01t0499300-01
Chr01	irgsp1_rep	CDS	17217732	17217860	.	-	0	Parent=Os01t0499300-01
Chr01	irgsp1_rep	CDS	17217463	17217527	.	-	0	Parent=Os01t0499300-01
Chr01	irgsp1_rep	CDS	17217274	17217367	.	-	1	Parent=Os01t0499300-01
Chr01	irgsp1_rep	CDS	17216887	17217051	.	-	0	Parent=Os01t0499300-01
Chr01	irgsp1_rep	CDS	17216697	17216803	.	-	0	Parent=Os01t0499300-01
Chr01	irgsp1_rep	CDS	17215840	17215945	.	-	1	Parent=Os01t0499300-01
Chr01	irgsp1_rep	CDS	17215705	17215751	.	-	0	Parent=Os01t0499300-01
Chr01	irgsp1_rep	CDS	17215287	17215605	.	-	1	Parent=Os01t0499300-01
Chr01	irgsp1_rep	CDS	17215020	17215109	.	-	0	Parent=Os01t0499300-01
Chr01	irgsp1_rep	CDS	17214874	17214936	.	-	0	Parent=Os01t0499300-01
Chr01	irgsp1_rep	CDS	17213862	17213936	.	-	0	Parent=Os01t0499300-01
Chr01	irgsp1_rep	CDS	17213212	17213274	.	-	0	Parent=Os01t0499300-01
Chr01	irgsp1_rep	CDS	17212376	17212428	.	-	0	Parent=Os01t0499300-01
Chr01	irgsp1_rep	CDS	17210548	17210728	.	-	1	Parent=Os01t0499300-01
Chr01	irgsp1_rep	three_prime_UTR	17210257	17210547	.	-	.	Parent=Os01t0499300-01
Chr01	irgsp1_rep	mRNA	17230765	17231229	.	-	.	ID=Os01t0500100-00;Name=Os01t0500100-00;Locus_id=Os01g0500100;Note=Conserved hypothetical protein.;Transcript_evidence=AK377120 (DDBJ);ORF_evidence=Q8LI23 (UniProt);TENOR=Os01t0500100-00
Chr01	irgsp1_rep	five_prime_UTR	17231023	17231229	.	-	.	Parent=Os01t0500100-00
Chr01	irgsp1_rep	CDS	17230765	17231022	.	-	0	Parent=Os01t0500100-00
Chr01	irgsp1_rep	mRNA	17262122	17263066	.	+	.	ID=Os01t0500400-01;Name=Os01t0500400-01;Locus_id=Os01g0500400;Note=Conserved hypothetical protein.;Transcript_evidence=AK103218 (DDBJ%2C Best hit);ORF_evidence=B8A8L2 (UniProt);NIAS_FLcDNA=J033122N23;Expression=AK103218;TENOR=Os01t0500400-01;KEGG=Os01t0500400-01
Chr01	irgsp1_rep	five_prime_UTR	17262122	17262202	.	+	.	Parent=Os01t0500400-01
Chr01	irgsp1_rep	CDS	17262203	17262592	.	+	0	Parent=Os01t0500400-01
Chr01	irgsp1_rep	three_prime_UTR	17262593	17263066	.	+	.	Parent=Os01t0500400-01
Chr01	irgsp1_rep	mRNA	17266185	17274780	.	-	.	ID=Os01t0500500-01;Name=Os01t0500500-01;Locus_id=Os01g0500500;Note=Hypothetical conserved gene.;Transcript_evidence=AK242644 (DDBJ%2C Best hit);ORF_evidence=B8A8L3 (UniProt);InterPro=Domain of unknown function DUF632 (IPR006867),Domain of unknown function DUF630 (IPR006868);NIAS_FLcDNA=J090025D19;TENOR=Os01t0500500-01;KEGG=Os01t0500500-01
Chr01	irgsp1_rep	five_prime_UTR	17274590	17274780	.	-	.	Parent=Os01t0500500-01
Chr01	irgsp1_rep	CDS	17273403	17274589	.	-	0	Parent=Os01t0500500-01
Chr01	irgsp1_rep	CDS	17271456	17271633	.	-	1	Parent=Os01t0500500-01
Chr01	irgsp1_rep	CDS	17269621	17269844	.	-	0	Parent=Os01t0500500-01
Chr01	irgsp1_rep	CDS	17266395	17267199	.	-	1	Parent=Os01t0500500-01
Chr01	irgsp1_rep	three_prime_UTR	17266185	17266394	.	-	.	Parent=Os01t0500500-01
Chr01	irgsp1_rep	mRNA	17275548	17278302	.	-	.	ID=Os01t0500600-01;Name=Os01t0500600-01;Locus_id=Os01g0500600;Note=Hypothetical protein.;Transcript_evidence=AK067312 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013104N03;Expression=AK067312;TENOR=Os01t0500600-01;KEGG=Os01t0500600-01
Chr01	irgsp1_rep	five_prime_UTR	17277499	17278302	.	-	.	Parent=Os01t0500600-01
Chr01	irgsp1_rep	CDS	17277250	17277498	.	-	0	Parent=Os01t0500600-01
Chr01	irgsp1_rep	three_prime_UTR	17275548	17277249	.	-	.	Parent=Os01t0500600-01
Chr01	irgsp1_rep	mRNA	17294028	17299540	.	-	.	ID=Os01t0500750-00;Name=Os01t0500750-00;Locus_id=Os01g0500750;Note=Non-protein coding transcript.;Transcript_evidence=CT834837 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os01t0500750-00
Chr01	irgsp1_rep	exon	17299197	17299540	.	-	.	Parent=Os01t0500750-00
Chr01	irgsp1_rep	exon	17298981	17299054	.	-	.	Parent=Os01t0500750-00
Chr01	irgsp1_rep	exon	17298734	17298802	.	-	.	Parent=Os01t0500750-00
Chr01	irgsp1_rep	exon	17294028	17294332	.	-	.	Parent=Os01t0500750-00
Chr01	irgsp1_rep	mRNA	17301041	17305995	.	+	.	ID=Os01t0500825-00;Name=Os01t0500825-00;Locus_id=Os01g0500825;Note=Conserved hypothetical protein.;Transcript_evidence=AK333545 (DDBJ);ORF_evidence=NP_001055633.1 (RefSeq);TENOR=Os01t0500825-00
Chr01	irgsp1_rep	five_prime_UTR	17301041	17301526	.	+	.	Parent=Os01t0500825-00
Chr01	irgsp1_rep	five_prime_UTR	17303882	17303992	.	+	.	Parent=Os01t0500825-00
Chr01	irgsp1_rep	five_prime_UTR	17304067	17304161	.	+	.	Parent=Os01t0500825-00
Chr01	irgsp1_rep	five_prime_UTR	17305204	17305409	.	+	.	Parent=Os01t0500825-00
Chr01	irgsp1_rep	five_prime_UTR	17305523	17305543	.	+	.	Parent=Os01t0500825-00
Chr01	irgsp1_rep	CDS	17305544	17305607	.	+	0	Parent=Os01t0500825-00
Chr01	irgsp1_rep	CDS	17305877	17305995	.	+	2	Parent=Os01t0500825-00
Chr01	irgsp1_rep	mRNA	17301967	17303705	.	+	.	ID=Os01t0500900-01;Name=Os01t0500900-01;Locus_id=Os01g0500900;Note=Rossmann-like alpha/beta/alpha sandwich fold domain containing protein.;Transcript_evidence=AK066713 (DDBJ%2C Best hit);ORF_evidence=XP_002884331.1 (RefSeq);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: tyrosyl-tRNA aminoacylation (GO:0006437),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: RNA binding (GO:0003723),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: tyrosine-tRNA ligase activity (GO:0004831),Molecular Function: ATP binding (GO:0005524);InterPro=Aminoacyl-tRNA synthetase%2C class I%2C conserved site (IPR001412),Aminoacyl-tRNA synthetase%2C class Ic (IPR002305),Tyrosyl-tRNA synthetase (IPR002307),RNA-binding S4 (IPR002942),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Tyrosyl-tRNA synthetase%2C bacterial-type (IPR024088),Tyrosyl-tRNA synthetase%2C bacterial-type%2C type 1 (IPR024107);NIAS_FLcDNA=J013075A21;Expression=AK066713;TENOR=Os01t0500900-01;KEGG=Os01t0500900-01 (EC:6.1.1.1)
Chr01	irgsp1_rep	five_prime_UTR	17301967	17302066	.	+	.	Parent=Os01t0500900-01
Chr01	irgsp1_rep	CDS	17302067	17303560	.	+	0	Parent=Os01t0500900-01
Chr01	irgsp1_rep	three_prime_UTR	17303561	17303705	.	+	.	Parent=Os01t0500900-01
Chr01	irgsp1_rep	mRNA	17309384	17325760	.	-	.	ID=Os01t0501000-01;Name=Os01t0501000-01;Locus_id=Os01g0501000;Oryzabase Gene Symbol Synonym(s)=OsMED9%2C MED9%2C OsMED9_1%2C MED9_1;Oryzabase Gene Name Synonym(s)=Mediator complex protein OsMED9%2C Mediator 9_1;Note=Conserved hypothetical protein.;Transcript_evidence=AK072794 (DDBJ%2C Best hit);ORF_evidence=XP_002447322.1 (RefSeq);NIAS_FLcDNA=J023138M03;Oryzabase=18695;Expression=AK072794;TENOR=Os01t0501000-01;KEGG=Os01t0501000-01
Chr01	irgsp1_rep	five_prime_UTR	17325384	17325760	.	-	.	Parent=Os01t0501000-01
Chr01	irgsp1_rep	five_prime_UTR	17323771	17323784	.	-	.	Parent=Os01t0501000-01
Chr01	irgsp1_rep	CDS	17323579	17323770	.	-	0	Parent=Os01t0501000-01
Chr01	irgsp1_rep	CDS	17320700	17320762	.	-	0	Parent=Os01t0501000-01
Chr01	irgsp1_rep	CDS	17319821	17319901	.	-	0	Parent=Os01t0501000-01
Chr01	irgsp1_rep	CDS	17309771	17309829	.	-	0	Parent=Os01t0501000-01
Chr01	irgsp1_rep	CDS	17309634	17309697	.	-	1	Parent=Os01t0501000-01
Chr01	irgsp1_rep	three_prime_UTR	17309384	17309633	.	-	.	Parent=Os01t0501000-01
Chr01	irgsp1_rep	mRNA	17341236	17346405	.	-	.	ID=Os01t0501700-01;Name=Os01t0501700-01;Locus_id=Os01g0501700;CGSNL Gene Symbol=TATC;CGSNL Gene Name=SEC-INDEPENDENT PROTEIN TRANSLOCASE SUBUNIT C;Oryzabase Gene Symbol Synonym(s)=OsTATC%2C OsTatC%2C TatC;Oryzabase Gene Name Synonym(s)=homologue of E. coli TATC%2C Sec-independent protein translocase subunit C;Note=Similar to TATC (CpTatC).;Transcript_evidence=AK067297 (DDBJ%2C Best hit);ORF_evidence=Q94G17 (UniProt);InterPro=Sec-independent periplasmic protein translocase (IPR002033),Sec-independent periplasmic protein translocase%2C conserved site (IPR019820),Twin arginine-targeting protein translocase%2C TatC (IPR019822);NIAS_FLcDNA=J013104L23;Oryzabase=6298;Expression=AK067297;TENOR=Os01t0501700-01;KEGG=Os01t0501700-01
Chr01	irgsp1_rep	five_prime_UTR	17346199	17346405	.	-	.	Parent=Os01t0501700-01
Chr01	irgsp1_rep	CDS	17345913	17346198	.	-	0	Parent=Os01t0501700-01
Chr01	irgsp1_rep	CDS	17343817	17344109	.	-	2	Parent=Os01t0501700-01
Chr01	irgsp1_rep	CDS	17342298	17342588	.	-	0	Parent=Os01t0501700-01
Chr01	irgsp1_rep	CDS	17341346	17341555	.	-	0	Parent=Os01t0501700-01
Chr01	irgsp1_rep	three_prime_UTR	17341236	17341345	.	-	.	Parent=Os01t0501700-01
Chr01	irgsp1_rep	mRNA	17349338	17350785	.	+	.	ID=Os01t0501800-01;Name=Os01t0501800-01;Locus_id=Os01g0501800;CGSNL Gene Symbol=PSBO;CGSNL Gene Name=PHOTOSYSTEM II SUBUNIT;Oryzabase Gene Symbol Synonym(s)=PsbO%2C psbO%2C OsPSBO;Oryzabase Gene Name Synonym(s)=PSII subunit PsbO%2C photosystem II subunit PsbO%2C 33kDa oxygen evolving protein;Note=Similar to Photosystem II oxygen-evolving complex protein 1 (Fragment).;Transcript_evidence=AK067715 (DDBJ%2C Best hit),AK060886 (DDBJ%2C Best hit),AK103920 (DDBJ%2C Best hit),AK103937 (DDBJ%2C Best hit),AK104080 (DDBJ%2C Best hit),AK104649 (DDBJ%2C Best hit),AK104760 (DDBJ%2C Best hit),AK119163 (DDBJ%2C Best hit),AK119188 (DDBJ%2C Best hit),AK119515 (DDBJ%2C Best hit);ORF_evidence=A5JV93 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Biological Process: photosystem II stabilization (GO:0042549),Cellular Component: photosystem II (GO:0009523),Cellular Component: oxygen evolving complex (GO:0009654),Cellular Component: extrinsic to membrane (GO:0019898),Molecular Function: calcium ion binding (GO:0005509);InterPro=Photosystem II PsbO%2C manganese-stabilising (IPR002628);NIAS_FLcDNA=J013119C03,001-035-B05,001-013-B04,001-013-G02,001-029-A06,006-311-B02,001-038-G12,001-036-D09,001-039-G10,001-201-D11;Oryzabase=9594;TENOR=Os01t0501800-01
Chr01	irgsp1_rep	five_prime_UTR	17349338	17349410	.	+	.	Parent=Os01t0501800-01
Chr01	irgsp1_rep	CDS	17349411	17349656	.	+	0	Parent=Os01t0501800-01
Chr01	irgsp1_rep	CDS	17349774	17350529	.	+	0	Parent=Os01t0501800-01
Chr01	irgsp1_rep	three_prime_UTR	17350530	17350785	.	+	.	Parent=Os01t0501800-01
Chr01	irgsp1_rep	mRNA	17384240	17387239	.	+	.	ID=Os01t0502300-00;Name=Os01t0502300-00;Locus_id=Os01g0502300;Note=Similar to palmitoyl-acyl carrier protein thioesterase.;Transcript_evidence=EU969173 (DDBJ);ORF_evidence=XP_002526311.1 (RefSeq);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Molecular Function: thiolester hydrolase activity (GO:0016790);InterPro=Acyl-ACP thioesterase (IPR002864);TENOR=Os01t0502300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	17384240	17384766	.	+	0	Parent=Os01t0502300-00
Chr01	irgsp1_rep	CDS	17384866	17384979	.	+	1	Parent=Os01t0502300-00
Chr01	irgsp1_rep	CDS	17386761	17386929	.	+	1	Parent=Os01t0502300-00
Chr01	irgsp1_rep	CDS	17387150	17387239	.	+	0	Parent=Os01t0502300-00
Chr01	irgsp1_rep	mRNA	17394305	17404420	.	+	.	ID=Os01t0502400-01;Name=Os01t0502400-01;Locus_id=Os01g0502400;Note=2OG-Fe(II) oxygenase domain containing protein.;Transcript_evidence=AK065149 (DDBJ%2C Best hit),AK104357 (DDBJ%2C Best hit),AK106095 (DDBJ%2C Best hit);ORF_evidence=B6U853 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706),Molecular Function: L-ascorbic acid binding (GO:0031418);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123),Prolyl 4-hydroxylase%2C alpha subunit (IPR006620);NIAS_FLcDNA=J013002B07,001-035-A03,001-207-B12;TENOR=Os01t0502400-01
Chr01	irgsp1_rep	five_prime_UTR	17394305	17394461	.	+	.	Parent=Os01t0502400-01
Chr01	irgsp1_rep	CDS	17394462	17394785	.	+	0	Parent=Os01t0502400-01
Chr01	irgsp1_rep	CDS	17398043	17398090	.	+	0	Parent=Os01t0502400-01
Chr01	irgsp1_rep	CDS	17399115	17399291	.	+	0	Parent=Os01t0502400-01
Chr01	irgsp1_rep	CDS	17399383	17399533	.	+	0	Parent=Os01t0502400-01
Chr01	irgsp1_rep	CDS	17399633	17399719	.	+	2	Parent=Os01t0502400-01
Chr01	irgsp1_rep	CDS	17401127	17401251	.	+	2	Parent=Os01t0502400-01
Chr01	irgsp1_rep	CDS	17401499	17401617	.	+	0	Parent=Os01t0502400-01
Chr01	irgsp1_rep	CDS	17403862	17403973	.	+	1	Parent=Os01t0502400-01
Chr01	irgsp1_rep	CDS	17404079	17404114	.	+	0	Parent=Os01t0502400-01
Chr01	irgsp1_rep	three_prime_UTR	17404115	17404420	.	+	.	Parent=Os01t0502400-01
Chr01	irgsp1_rep	mRNA	17420279	17421266	.	+	.	ID=Os01t0502700-00;Name=Os01t0502700-00;Locus_id=Os01g0502700;Note=Similar to Histone H2A.;Transcript_evidence=AK249306 (DDBJ);ORF_evidence=B7F7N8 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H2A (IPR002119),Histone core (IPR007125),Histone-fold (IPR009072);TENOR=Os01t0502700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	17420279	17420809	.	+	0	Parent=Os01t0502700-00
Chr01	irgsp1_rep	CDS	17420867	17421121	.	+	0	Parent=Os01t0502700-00
Chr01	irgsp1_rep	three_prime_UTR	17421122	17421266	.	+	.	Parent=Os01t0502700-00
Chr01	irgsp1_rep	mRNA	17422915	17427640	.	-	.	ID=Os01t0502800-01;Name=Os01t0502800-01;Locus_id=Os01g0502800;Note=RNA recognition motif domain domain containing protein.;Transcript_evidence=AK059957 (DDBJ%2C Best hit);ORF_evidence=NP_001169115.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=006-211-D05;TENOR=Os01t0502800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	17427460	17427640	.	-	.	Parent=Os01t0502800-01
Chr01	irgsp1_rep	five_prime_UTR	17427217	17427351	.	-	.	Parent=Os01t0502800-01
Chr01	irgsp1_rep	five_prime_UTR	17425273	17425389	.	-	.	Parent=Os01t0502800-01
Chr01	irgsp1_rep	five_prime_UTR	17424509	17424572	.	-	.	Parent=Os01t0502800-01
Chr01	irgsp1_rep	CDS	17424504	17424508	.	-	0	Parent=Os01t0502800-01
Chr01	irgsp1_rep	CDS	17424287	17424398	.	-	1	Parent=Os01t0502800-01
Chr01	irgsp1_rep	CDS	17423220	17423264	.	-	0	Parent=Os01t0502800-01
Chr01	irgsp1_rep	three_prime_UTR	17422915	17423219	.	-	.	Parent=Os01t0502800-01
Chr01	irgsp1_rep	mRNA	17425616	17426120	.	-	.	ID=Os01t0502900-00;Name=Os01t0502900-00;Locus_id=Os01g0502900;Note=Similar to Histone H2B.2.;Transcript_evidence=EU973825 (DDBJ);ORF_evidence=B6U9B0 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H2B (IPR000558),Histone-fold (IPR009072);TENOR=Os01t0502900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	17425815	17426120	.	-	0	Parent=Os01t0502900-00
Chr01	irgsp1_rep	CDS	17425616	17425705	.	-	0	Parent=Os01t0502900-00
Chr01	irgsp1_rep	mRNA	17456299	17464973	.	-	.	ID=Os01t0503400-01;Name=Os01t0503400-01;Locus_id=Os01g0503400;CGSNL Gene Symbol=NRAMP6;CGSNL Gene Name=NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsNRAMP6%2C Nramp6%2C l-NRAMP6%2C s-NRAMP6%2C OsNramp6.8;Oryzabase Gene Name Synonym(s)=BACTERIOCIDE EFFECT 6%2C Natural resistance-associated macrophage protein 6;Note=Similar to (Rice Genome Annotation Project) metal transporter Nramp6.;Transcript_evidence=AK122122 (DDBJ%2C Best hit);ORF_evidence=Q5QN13-2 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Natural resistance-associated macrophage protein (IPR001046);NIAS_FLcDNA=J033131A05;Oryzabase=8330;Expression=AK122122;TENOR=Os01t0503400-01;KEGG=Os01t0503400-01
Chr01	irgsp1_rep	five_prime_UTR	17464706	17464973	.	-	.	Parent=Os01t0503400-01
Chr01	irgsp1_rep	CDS	17464511	17464705	.	-	0	Parent=Os01t0503400-01
Chr01	irgsp1_rep	CDS	17462803	17462988	.	-	0	Parent=Os01t0503400-01
Chr01	irgsp1_rep	three_prime_UTR	17462613	17462802	.	-	.	Parent=Os01t0503400-01
Chr01	irgsp1_rep	three_prime_UTR	17462428	17462506	.	-	.	Parent=Os01t0503400-01
Chr01	irgsp1_rep	three_prime_UTR	17462244	17462348	.	-	.	Parent=Os01t0503400-01
Chr01	irgsp1_rep	three_prime_UTR	17461188	17461297	.	-	.	Parent=Os01t0503400-01
Chr01	irgsp1_rep	three_prime_UTR	17458589	17458770	.	-	.	Parent=Os01t0503400-01
Chr01	irgsp1_rep	three_prime_UTR	17458200	17458269	.	-	.	Parent=Os01t0503400-01
Chr01	irgsp1_rep	three_prime_UTR	17457590	17457760	.	-	.	Parent=Os01t0503400-01
Chr01	irgsp1_rep	three_prime_UTR	17456299	17457310	.	-	.	Parent=Os01t0503400-01
Chr01	irgsp1_rep	mRNA	17463452	17464972	.	-	.	ID=Os01t0503400-02;Name=Os01t0503400-02;Locus_id=Os01g0503400;CGSNL Gene Symbol=NRAMP6;CGSNL Gene Name=NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsNRAMP6%2C Nramp6%2C l-NRAMP6%2C s-NRAMP6%2C OsNramp6.8;Oryzabase Gene Name Synonym(s)=BACTERIOCIDE EFFECT 6%2C Natural resistance-associated macrophage protein 6;Note=Similar to cDNA clone:J013164K10%2C full insert sequence.;Transcript_evidence=AK066889 (DDBJ%2C Best hit);ORF_evidence=longestORF;GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Natural resistance-associated macrophage protein (IPR001046);NIAS_FLcDNA=J013089K10;Oryzabase=8330;Expression=AK066889;TENOR=Os01t0503400-02;KEGG=Os01t0503400-02
Chr01	irgsp1_rep	five_prime_UTR	17464706	17464972	.	-	.	Parent=Os01t0503400-02
Chr01	irgsp1_rep	CDS	17464376	17464705	.	-	0	Parent=Os01t0503400-02
Chr01	irgsp1_rep	three_prime_UTR	17463452	17464375	.	-	.	Parent=Os01t0503400-02
Chr01	irgsp1_rep	mRNA	17454023	17464971	.	-	.	ID=Os01t0503400-03;Name=Os01t0503400-03;Locus_id=Os01g0503400;RAP-DB Gene Symbol Synonym(s)=NRAMP6%2C l-Nramp6;RAP-DB Gene Name Synonym(s)=Natural resistance-associated macrophage protein 6;CGSNL Gene Symbol=NRAMP6;CGSNL Gene Name=NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsNRAMP6%2C Nramp6%2C l-NRAMP6%2C s-NRAMP6%2C OsNramp6.8;Oryzabase Gene Name Synonym(s)=BACTERIOCIDE EFFECT 6%2C Natural resistance-associated macrophage protein 6;Note=Iron and manganese transporter%2C Negative regulation of disease resistance to the rice blast fungus;Transcript_evidence=AK068118;ORF_evidence=Q5QN13;GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion transmembrane transporter activity (GO:0046873),Cellular Component: membrane (GO:0016020);InterPro=NRAMP family (IPR001046);NIAS_FLcDNA=J013135E06;Manual Curation=July 29%2C 2020;Literature_PMID=28430017;Oryzabase=8330;Expression=AK068118;TENOR=Os01t0503400-03;Subcellular location=plasma membrane (GO:0005886)
Chr01	irgsp1_rep	five_prime_UTR	17464706	17464971	.	-	.	Parent=Os01t0503400-03
Chr01	irgsp1_rep	CDS	17464511	17464705	.	-	0	Parent=Os01t0503400-03
Chr01	irgsp1_rep	CDS	17462910	17462988	.	-	0	Parent=Os01t0503400-03
Chr01	irgsp1_rep	CDS	17462613	17462653	.	-	2	Parent=Os01t0503400-03
Chr01	irgsp1_rep	CDS	17462428	17462506	.	-	0	Parent=Os01t0503400-03
Chr01	irgsp1_rep	CDS	17462244	17462348	.	-	2	Parent=Os01t0503400-03
Chr01	irgsp1_rep	CDS	17461188	17461297	.	-	2	Parent=Os01t0503400-03
Chr01	irgsp1_rep	CDS	17458589	17458770	.	-	0	Parent=Os01t0503400-03
Chr01	irgsp1_rep	CDS	17458200	17458269	.	-	1	Parent=Os01t0503400-03
Chr01	irgsp1_rep	CDS	17457590	17457760	.	-	0	Parent=Os01t0503400-03
Chr01	irgsp1_rep	CDS	17457206	17457310	.	-	0	Parent=Os01t0503400-03
Chr01	irgsp1_rep	CDS	17456765	17456890	.	-	0	Parent=Os01t0503400-03
Chr01	irgsp1_rep	CDS	17456485	17456580	.	-	0	Parent=Os01t0503400-03
Chr01	irgsp1_rep	CDS	17454399	17454692	.	-	0	Parent=Os01t0503400-03
Chr01	irgsp1_rep	three_prime_UTR	17454023	17454398	.	-	.	Parent=Os01t0503400-03
Chr01	irgsp1_rep	mRNA	17459828	17464840	.	-	.	ID=Os01t0503400-04;Name=Os01t0503400-04;Locus_id=Os01g0503400;RAP-DB Gene Symbol Synonym(s)=Nramp6%2C OsNramp6.8%2C s-Nramp6;RAP-DB Gene Name Synonym(s)=Natural resistance-associated macrophage protein 6;CGSNL Gene Symbol=NRAMP6;CGSNL Gene Name=NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsNRAMP6%2C Nramp6%2C l-NRAMP6%2C s-NRAMP6%2C OsNramp6.8;Oryzabase Gene Name Synonym(s)=BACTERIOCIDE EFFECT 6%2C Natural resistance-associated macrophage protein 6;Note=Iron and manganese transporter%2C Target of osa-miR7695%2C Negative regulation of disease resistance to the rice blast fungus;Transcript_evidence=AK072201;ORF_evidence=Q5QN13-4;GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion transmembrane transporter activity (GO:0046873),Cellular Component: membrane (GO:0016020);InterPro=NRAMP family (IPR001046);NIAS_FLcDNA=J013164K10;Manual Curation=July 29%2C 2020;Literature_PMID=31852430,28430017,23627500;Oryzabase=8330;Expression=AK072201;TENOR=Os01t0503400-04;Subcellular location=plasma membrane (GO:0005886)
Chr01	irgsp1_rep	five_prime_UTR	17464706	17464840	.	-	.	Parent=Os01t0503400-04
Chr01	irgsp1_rep	CDS	17464511	17464705	.	-	0	Parent=Os01t0503400-04
Chr01	irgsp1_rep	CDS	17462910	17462988	.	-	0	Parent=Os01t0503400-04
Chr01	irgsp1_rep	CDS	17462613	17462653	.	-	2	Parent=Os01t0503400-04
Chr01	irgsp1_rep	CDS	17462428	17462506	.	-	0	Parent=Os01t0503400-04
Chr01	irgsp1_rep	CDS	17462244	17462348	.	-	2	Parent=Os01t0503400-04
Chr01	irgsp1_rep	CDS	17461164	17461297	.	-	2	Parent=Os01t0503400-04
Chr01	irgsp1_rep	three_prime_UTR	17459828	17461163	.	-	.	Parent=Os01t0503400-04
Chr01	irgsp1_rep	mRNA	17457005	17464765	.	-	.	ID=Os01t0503400-05;Name=Os01t0503400-05;Locus_id=Os01g0503400;CGSNL Gene Symbol=NRAMP6;CGSNL Gene Name=NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsNRAMP6%2C Nramp6%2C l-NRAMP6%2C s-NRAMP6%2C OsNramp6.8;Oryzabase Gene Name Synonym(s)=BACTERIOCIDE EFFECT 6%2C Natural resistance-associated macrophage protein 6;Note=Similar to cDNA clone:J013164K10%2C full insert sequence.;Transcript_evidence=AK068641 (DDBJ%2C Best hit);ORF_evidence=Q5QN13-2 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Natural resistance-associated macrophage protein (IPR001046);NIAS_FLcDNA=J013157N12;Oryzabase=8330;Expression=AK068641;TENOR=Os01t0503400-05;KEGG=Os01t0503400-05
Chr01	irgsp1_rep	five_prime_UTR	17464706	17464765	.	-	.	Parent=Os01t0503400-05
Chr01	irgsp1_rep	CDS	17464511	17464705	.	-	0	Parent=Os01t0503400-05
Chr01	irgsp1_rep	CDS	17462910	17462988	.	-	0	Parent=Os01t0503400-05
Chr01	irgsp1_rep	CDS	17462613	17462653	.	-	2	Parent=Os01t0503400-05
Chr01	irgsp1_rep	CDS	17462428	17462506	.	-	0	Parent=Os01t0503400-05
Chr01	irgsp1_rep	CDS	17462244	17462348	.	-	2	Parent=Os01t0503400-05
Chr01	irgsp1_rep	CDS	17461188	17461297	.	-	2	Parent=Os01t0503400-05
Chr01	irgsp1_rep	CDS	17458589	17458770	.	-	0	Parent=Os01t0503400-05
Chr01	irgsp1_rep	CDS	17458200	17458269	.	-	1	Parent=Os01t0503400-05
Chr01	irgsp1_rep	CDS	17457590	17457760	.	-	0	Parent=Os01t0503400-05
Chr01	irgsp1_rep	CDS	17457170	17457310	.	-	0	Parent=Os01t0503400-05
Chr01	irgsp1_rep	three_prime_UTR	17457005	17457169	.	-	.	Parent=Os01t0503400-05
Chr01	irgsp1_rep	mRNA	17490478	17491818	.	-	.	ID=Os01t0504100-01;Name=Os01t0504100-01;Locus_id=Os01g0504100;CGSNL Gene Symbol=PUP8;CGSNL Gene Name=PURINE PERMEASE 8;Oryzabase Gene Symbol Synonym(s)=OsPUP8;Oryzabase Gene Name Synonym(s)=purine permease 8%2C PUP-type cytokinin transporter 8;Note=Protein of unknown function DUF250 domain containing protein.;Transcript_evidence=AK106017 (DDBJ%2C Best hit);ORF_evidence=D8L9K5 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620),Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=001-206-B08;Oryzabase=15009;Expression=AK106017;TENOR=Os01t0504100-01;KEGG=Os01t0504100-01
Chr01	irgsp1_rep	five_prime_UTR	17491747	17491818	.	-	.	Parent=Os01t0504100-01
Chr01	irgsp1_rep	CDS	17490607	17491746	.	-	0	Parent=Os01t0504100-01
Chr01	irgsp1_rep	three_prime_UTR	17490478	17490606	.	-	.	Parent=Os01t0504100-01
Chr01	irgsp1_rep	mRNA	17501351	17501451	.	-	.	ID=Os01t0504300-00;Name=Os01t0504300-00;Locus_id=Os01g0504300;Note=Non-protein coding transcript.;Transcript_evidence=EU942010 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0504300-00
Chr01	irgsp1_rep	exon	17501351	17501451	.	-	.	Parent=Os01t0504300-00
Chr01	irgsp1_rep	mRNA	17508308	17512361	.	-	.	ID=Os01t0504500-01;Name=Os01t0504500-01;Locus_id=Os01g0504500;Note=Similar to Transparent testa 12 protein.;Transcript_evidence=AK122047 (DDBJ%2C Best hit);ORF_evidence=B6UD60 (UniProt);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);NIAS_FLcDNA=J033114C22;Expression=AK122047;TENOR=Os01t0504500-01;KEGG=Os01t0504500-01
Chr01	irgsp1_rep	five_prime_UTR	17512269	17512361	.	-	.	Parent=Os01t0504500-01
Chr01	irgsp1_rep	CDS	17511597	17512268	.	-	0	Parent=Os01t0504500-01
Chr01	irgsp1_rep	three_prime_UTR	17508308	17511596	.	-	.	Parent=Os01t0504500-01
Chr01	irgsp1_rep	mRNA	17504553	17512305	.	-	.	ID=Os01t0504500-02;Name=Os01t0504500-02;Locus_id=Os01g0504500;Note=Multi antimicrobial extrusion protein MatE family protein.;Transcript_evidence=AK103784 (DDBJ%2C Best hit);ORF_evidence=B6U6E4 (UniProt);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);NIAS_FLcDNA=J033145I01;Expression=AK103784;TENOR=Os01t0504500-02;KEGG=Os01t0504500-02
Chr01	irgsp1_rep	five_prime_UTR	17512269	17512305	.	-	.	Parent=Os01t0504500-02
Chr01	irgsp1_rep	CDS	17511951	17512268	.	-	0	Parent=Os01t0504500-02
Chr01	irgsp1_rep	CDS	17508105	17508649	.	-	0	Parent=Os01t0504500-02
Chr01	irgsp1_rep	CDS	17506413	17506499	.	-	1	Parent=Os01t0504500-02
Chr01	irgsp1_rep	CDS	17506277	17506333	.	-	1	Parent=Os01t0504500-02
Chr01	irgsp1_rep	CDS	17505946	17506184	.	-	1	Parent=Os01t0504500-02
Chr01	irgsp1_rep	CDS	17505451	17505656	.	-	2	Parent=Os01t0504500-02
Chr01	irgsp1_rep	CDS	17504788	17504844	.	-	0	Parent=Os01t0504500-02
Chr01	irgsp1_rep	three_prime_UTR	17504553	17504787	.	-	.	Parent=Os01t0504500-02
Chr01	irgsp1_rep	mRNA	17559698	17565462	.	-	.	ID=Os01t0504950-01;Name=Os01t0504950-01;Locus_id=Os01g0504950;Note=Hypothetical gene.;Transcript_evidence=AK288436 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090033P03;TENOR=Os01t0504950-01;KEGG=Os01t0504950-01
Chr01	irgsp1_rep	five_prime_UTR	17562411	17565462	.	-	.	Parent=Os01t0504950-01
Chr01	irgsp1_rep	CDS	17562066	17562410	.	-	0	Parent=Os01t0504950-01
Chr01	irgsp1_rep	three_prime_UTR	17559698	17562065	.	-	.	Parent=Os01t0504950-01
Chr01	irgsp1_rep	mRNA	17560761	17564889	.	+	.	ID=Os01t0505400-01;Name=Os01t0505400-01;Locus_id=Os01g0505400;Note=Similar to 2-hydroxyphytanoyl-CoA lyase.;Transcript_evidence=AK065111 (DDBJ%2C Best hit);ORF_evidence=B6U1T9 (UniProt);GO=Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity (GO:0016740),Molecular Function: thiamine pyrophosphate binding (GO:0030976);InterPro=TPP-binding enzyme%2C conserved site (IPR000399),Thiamine pyrophosphate enzyme%2C C-terminal TPP-binding (IPR011766),Thiamine pyrophosphate enzyme%2C central domain (IPR012000),Thiamine pyrophosphate enzyme%2C N-terminal TPP-binding domain (IPR012001);NIAS_FLcDNA=J013001O02;TENOR=Os01t0505400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	17560761	17560947	.	+	.	Parent=Os01t0505400-01
Chr01	irgsp1_rep	CDS	17560948	17562372	.	+	0	Parent=Os01t0505400-01
Chr01	irgsp1_rep	three_prime_UTR	17562373	17564889	.	+	.	Parent=Os01t0505400-01
Chr01	irgsp1_rep	mRNA	17564470	17564852	.	+	.	ID=Os01t0505400-02;Name=Os01t0505400-02;Locus_id=Os01g0505400;Note=Similar to 2-hydroxyphytanoyl-CoA lyase.;Transcript_evidence=AK061652 (DDBJ%2C Best hit);ORF_evidence=B6U1T9 (UniProt);NIAS_FLcDNA=001-036-C06;Expression=AK061652;TENOR=Os01t0505400-02;KEGG=Os01t0505400-02 (EC:4.1.-.-)
Chr01	irgsp1_rep	CDS	17564470	17564610	.	+	0	Parent=Os01t0505400-02
Chr01	irgsp1_rep	three_prime_UTR	17564611	17564852	.	+	.	Parent=Os01t0505400-02
Chr01	irgsp1_rep	mRNA	17565806	17567476	.	-	.	ID=Os01t0505500-00;Name=Os01t0505500-00;Locus_id=Os01g0505500;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK373221 (DDBJ);ORF_evidence=NP_001147833.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os01t0505500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	17565854	17567476	.	-	0	Parent=Os01t0505500-00
Chr01	irgsp1_rep	three_prime_UTR	17565806	17565853	.	-	.	Parent=Os01t0505500-00
Chr01	irgsp1_rep	mRNA	17581215	17582104	.	+	.	ID=Os01t0505600-01;Name=Os01t0505600-01;Locus_id=Os01g0505600;CGSNL Gene Symbol=CML11;CGSNL Gene Name=CALMODULIN-LIKE PROTEIN 11;Oryzabase Gene Symbol Synonym(s)=OsCML11;Oryzabase Gene Name Synonym(s)=calmodulin-like protein 11;Note=EF-Hand type domain containing protein.;Transcript_evidence=AK072726 (DDBJ%2C Best hit);ORF_evidence=NP_001152651.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J023139K02;Oryzabase=10497;Expression=AK072726;TENOR=Os01t0505600-01;KEGG=Os01t0505600-01
Chr01	irgsp1_rep	five_prime_UTR	17581215	17581248	.	+	.	Parent=Os01t0505600-01
Chr01	irgsp1_rep	CDS	17581249	17581884	.	+	0	Parent=Os01t0505600-01
Chr01	irgsp1_rep	three_prime_UTR	17581885	17582104	.	+	.	Parent=Os01t0505600-01
Chr01	irgsp1_rep	mRNA	17583645	17586287	.	+	.	ID=Os01t0505700-01;Name=Os01t0505700-01;Locus_id=Os01g0505700;Note=Conserved hypothetical protein.;Transcript_evidence=AK102942 (DDBJ%2C Best hit);ORF_evidence=B9EX47 (UniProt);NIAS_FLcDNA=J033114L10;TENOR=Os01t0505700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	17583645	17584059	.	+	.	Parent=Os01t0505700-01
Chr01	irgsp1_rep	CDS	17584060	17584153	.	+	0	Parent=Os01t0505700-01
Chr01	irgsp1_rep	CDS	17585069	17585304	.	+	2	Parent=Os01t0505700-01
Chr01	irgsp1_rep	CDS	17585400	17585528	.	+	0	Parent=Os01t0505700-01
Chr01	irgsp1_rep	CDS	17585643	17585702	.	+	0	Parent=Os01t0505700-01
Chr01	irgsp1_rep	CDS	17585979	17586053	.	+	0	Parent=Os01t0505700-01
Chr01	irgsp1_rep	three_prime_UTR	17586054	17586287	.	+	.	Parent=Os01t0505700-01
Chr01	irgsp1_rep	mRNA	17583755	17585528	.	-	.	ID=Os01t0505866-00;Name=Os01t0505866-00;Locus_id=Os01g0505866;Note=Hypothetical gene.;Transcript_evidence=BT019261 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0505866-00
Chr01	irgsp1_rep	five_prime_UTR	17585398	17585528	.	-	.	Parent=Os01t0505866-00
Chr01	irgsp1_rep	five_prime_UTR	17585088	17585302	.	-	.	Parent=Os01t0505866-00
Chr01	irgsp1_rep	CDS	17585051	17585087	.	-	0	Parent=Os01t0505866-00
Chr01	irgsp1_rep	CDS	17584108	17584144	.	-	2	Parent=Os01t0505866-00
Chr01	irgsp1_rep	CDS	17583755	17584002	.	-	1	Parent=Os01t0505866-00
Chr01	irgsp1_rep	mRNA	17605172	17606920	.	+	.	ID=Os01t0506100-01;Name=Os01t0506100-01;Locus_id=Os01g0506100;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK109825 (DDBJ%2C Best hit);ORF_evidence=A2WQI6 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-148-B04;Expression=AK109825;TENOR=Os01t0506100-01;KEGG=Os01t0506100-01
Chr01	irgsp1_rep	five_prime_UTR	17605172	17605207	.	+	.	Parent=Os01t0506100-01
Chr01	irgsp1_rep	CDS	17605208	17606833	.	+	0	Parent=Os01t0506100-01
Chr01	irgsp1_rep	three_prime_UTR	17606834	17606920	.	+	.	Parent=Os01t0506100-01
Chr01	irgsp1_rep	mRNA	17605172	17607509	.	+	.	ID=Os01t0506100-02;Name=Os01t0506100-02;Locus_id=Os01g0506100;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK102377 (DDBJ%2C Best hit);ORF_evidence=A2WQI6 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033091P06;Expression=AK102377;TENOR=Os01t0506100-02;KEGG=Os01t0506100-02
Chr01	irgsp1_rep	five_prime_UTR	17605172	17605207	.	+	.	Parent=Os01t0506100-02
Chr01	irgsp1_rep	CDS	17605208	17606833	.	+	0	Parent=Os01t0506100-02
Chr01	irgsp1_rep	three_prime_UTR	17606834	17607116	.	+	.	Parent=Os01t0506100-02
Chr01	irgsp1_rep	three_prime_UTR	17607206	17607509	.	+	.	Parent=Os01t0506100-02
Chr01	irgsp1_rep	mRNA	17612391	17626954	.	-	.	ID=Os01t0506200-01;Name=Os01t0506200-01;Locus_id=Os01g0506200;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK073118 (DDBJ%2C Best hit);ORF_evidence=B8A8Y6 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J033011J18;Expression=AK073118;TENOR=Os01t0506200-01;KEGG=Os01t0506200-01
Chr01	irgsp1_rep	five_prime_UTR	17626628	17626954	.	-	.	Parent=Os01t0506200-01
Chr01	irgsp1_rep	CDS	17626420	17626627	.	-	0	Parent=Os01t0506200-01
Chr01	irgsp1_rep	CDS	17624911	17625020	.	-	2	Parent=Os01t0506200-01
Chr01	irgsp1_rep	CDS	17624713	17624823	.	-	0	Parent=Os01t0506200-01
Chr01	irgsp1_rep	CDS	17624577	17624634	.	-	0	Parent=Os01t0506200-01
Chr01	irgsp1_rep	CDS	17622875	17622964	.	-	2	Parent=Os01t0506200-01
Chr01	irgsp1_rep	CDS	17620401	17620495	.	-	2	Parent=Os01t0506200-01
Chr01	irgsp1_rep	CDS	17618544	17618597	.	-	0	Parent=Os01t0506200-01
Chr01	irgsp1_rep	CDS	17618297	17618434	.	-	0	Parent=Os01t0506200-01
Chr01	irgsp1_rep	CDS	17617247	17617304	.	-	0	Parent=Os01t0506200-01
Chr01	irgsp1_rep	CDS	17617033	17617147	.	-	2	Parent=Os01t0506200-01
Chr01	irgsp1_rep	CDS	17615968	17616037	.	-	1	Parent=Os01t0506200-01
Chr01	irgsp1_rep	CDS	17613572	17613643	.	-	0	Parent=Os01t0506200-01
Chr01	irgsp1_rep	CDS	17612800	17612916	.	-	0	Parent=Os01t0506200-01
Chr01	irgsp1_rep	three_prime_UTR	17612391	17612799	.	-	.	Parent=Os01t0506200-01
Chr01	irgsp1_rep	mRNA	17681439	17681950	.	+	.	ID=Os01t0507000-01;Name=Os01t0507000-01;Locus_id=Os01g0507000;CGSNL Gene Symbol=MIR159A;CGSNL Gene Name=MICRORNA159A;Oryzabase Gene Symbol Synonym(s)=miR159a%2C osa-miR159a%2C osa-MIR159a%2C OsmiR159a.2%2C miR159a.2%2C OsmiR159a.1%2C miR159a.1%2C osa-miR159a.1%2C osa-miR159a.2;Note=Non-protein coding transcript.;Transcript_evidence=AK062682 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-105-H06;Oryzabase=8533;TENOR=Os01t0507000-01
Chr01	irgsp1_rep	exon	17681439	17681950	.	+	.	Parent=Os01t0507000-01
Chr01	irgsp1_rep	mRNA	17681486	17683119	.	+	.	ID=Os01t0507000-02;Name=Os01t0507000-02;Locus_id=Os01g0507000;CGSNL Gene Symbol=MIR159A;CGSNL Gene Name=MICRORNA159A;Oryzabase Gene Symbol Synonym(s)=miR159a%2C osa-miR159a%2C osa-MIR159a%2C OsmiR159a.2%2C miR159a.2%2C OsmiR159a.1%2C miR159a.1%2C osa-miR159a.1%2C osa-miR159a.2;Note=Conserved hypothetical protein.;Transcript_evidence=AK100209 (DDBJ%2C Best hit);ORF_evidence=A6MZH8 (UniProt);NIAS_FLcDNA=J023042P20;Oryzabase=8533;TENOR=Os01t0507000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	17681486	17682796	.	+	.	Parent=Os01t0507000-02
Chr01	irgsp1_rep	CDS	17682797	17683051	.	+	0	Parent=Os01t0507000-02
Chr01	irgsp1_rep	three_prime_UTR	17683052	17683119	.	+	.	Parent=Os01t0507000-02
Chr01	irgsp1_rep	mRNA	17697147	17706364	.	+	.	ID=Os01t0507300-01;Name=Os01t0507300-01;Locus_id=Os01g0507300;Note=Protein of unknown function DUF92%2C transmembrane family protein.;Transcript_evidence=AK099867 (DDBJ%2C Best hit);ORF_evidence=NP_568386.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Protein of unknown function DUF92%2C TMEM19 (IPR002794);NIAS_FLcDNA=J013111E19;Expression=AK099867;TENOR=Os01t0507300-01;KEGG=Os01t0507300-01
Chr01	irgsp1_rep	five_prime_UTR	17697147	17697222	.	+	.	Parent=Os01t0507300-01
Chr01	irgsp1_rep	CDS	17697223	17697494	.	+	0	Parent=Os01t0507300-01
Chr01	irgsp1_rep	CDS	17698189	17698411	.	+	1	Parent=Os01t0507300-01
Chr01	irgsp1_rep	CDS	17699311	17699559	.	+	0	Parent=Os01t0507300-01
Chr01	irgsp1_rep	CDS	17705762	17705893	.	+	0	Parent=Os01t0507300-01
Chr01	irgsp1_rep	three_prime_UTR	17705894	17706364	.	+	.	Parent=Os01t0507300-01
Chr01	irgsp1_rep	mRNA	17708828	17713352	.	+	.	ID=Os01t0507500-01;Name=Os01t0507500-01;Locus_id=Os01g0507500;Note=Transcription elognation factor  Eaf%2C N-terminal domain containing protein.;Transcript_evidence=AK059119 (DDBJ%2C Best hit),AK102891 (DDBJ%2C Best hit);ORF_evidence=A2WQJ4 (UniProt);InterPro=Transcription elognation factor  Eaf%2C N-terminal (IPR019194);NIAS_FLcDNA=001-022-E12,J033112M22;Expression=AK059119;TENOR=Os01t0507500-01;KEGG=Os01t0507500-01
Chr01	irgsp1_rep	five_prime_UTR	17708828	17708913	.	+	.	Parent=Os01t0507500-01
Chr01	irgsp1_rep	CDS	17708914	17709034	.	+	0	Parent=Os01t0507500-01
Chr01	irgsp1_rep	CDS	17710077	17710429	.	+	2	Parent=Os01t0507500-01
Chr01	irgsp1_rep	CDS	17711893	17711935	.	+	0	Parent=Os01t0507500-01
Chr01	irgsp1_rep	CDS	17712589	17713031	.	+	2	Parent=Os01t0507500-01
Chr01	irgsp1_rep	three_prime_UTR	17713032	17713352	.	+	.	Parent=Os01t0507500-01
Chr01	irgsp1_rep	mRNA	17741064	17742255	.	+	.	ID=Os01t0507700-01;Name=Os01t0507700-01;Locus_id=Os01g0507700;CGSNL Gene Symbol=HMP3;CGSNL Gene Name=HEAVY METAL-ASSOCIATED PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsHMP3%2C OsHMP03;Oryzabase Gene Name Synonym(s)=Heavy metal-associated protein 3;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK060145 (DDBJ%2C Best hit);ORF_evidence=B6SXF1 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);NIAS_FLcDNA=006-310-A06;Oryzabase=23529;Expression=AK060145;TENOR=Os01t0507700-01;KEGG=Os01t0507700-01
Chr01	irgsp1_rep	five_prime_UTR	17741064	17741206	.	+	.	Parent=Os01t0507700-01
Chr01	irgsp1_rep	CDS	17741207	17741293	.	+	0	Parent=Os01t0507700-01
Chr01	irgsp1_rep	CDS	17741464	17741832	.	+	0	Parent=Os01t0507700-01
Chr01	irgsp1_rep	three_prime_UTR	17741833	17742255	.	+	.	Parent=Os01t0507700-01
Chr01	irgsp1_rep	mRNA	17746363	17752009	.	+	.	ID=Os01t0507900-01;Name=Os01t0507900-01;Locus_id=Os01g0507900;CGSNL Gene Symbol=CLPP3;CGSNL Gene Name=CHLOROPLAST PROTEASE 3;Oryzabase Gene Symbol Synonym(s)=OsClpP3%2C OsClp2%2C CLP2;Oryzabase Gene Name Synonym(s)=plastidic caseinolytic protease 3%2C chloroplast Clp 3%2C Clp protease 2;Note=Similar to NClpP3 (ATP-dependent Clp protease proteolytic subunit ClpP3).;Transcript_evidence=AK102473 (DDBJ%2C Best hit);ORF_evidence=A2WQJ7 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S14%2C ClpP (IPR001907),Peptidase S14%2C ClpP%2C active site (IPR018215),Peptidase S14/S49 (IPR023562);NIAS_FLcDNA=J033094H09;Oryzabase=13360;Expression=AK102473;TENOR=Os01t0507900-01;KEGG=Os01t0507900-01 (EC:3.4.21.92)
Chr01	irgsp1_rep	five_prime_UTR	17746363	17746438	.	+	.	Parent=Os01t0507900-01
Chr01	irgsp1_rep	CDS	17746439	17746717	.	+	0	Parent=Os01t0507900-01
Chr01	irgsp1_rep	CDS	17748023	17748137	.	+	0	Parent=Os01t0507900-01
Chr01	irgsp1_rep	CDS	17750709	17750884	.	+	2	Parent=Os01t0507900-01
Chr01	irgsp1_rep	CDS	17751214	17751309	.	+	0	Parent=Os01t0507900-01
Chr01	irgsp1_rep	CDS	17751395	17751673	.	+	0	Parent=Os01t0507900-01
Chr01	irgsp1_rep	three_prime_UTR	17751674	17751674	.	+	.	Parent=Os01t0507900-01
Chr01	irgsp1_rep	three_prime_UTR	17751776	17752009	.	+	.	Parent=Os01t0507900-01
Chr01	irgsp1_rep	mRNA	17756115	17764819	.	+	.	ID=Os01t0508000-01;Name=Os01t0508000-01;Locus_id=Os01g0508000;CGSNL Gene Symbol=BGLU1;CGSNL Gene Name=BETA-GLUCOSIDASE 1;Oryzabase Gene Symbol Synonym(s)=Os1bglu1%2C Os1Bglu1;Oryzabase Gene Name Synonym(s)=beta-glucosidase 1;Note=Similar to Beta-glucosidase.;Transcript_evidence=AK069177 (DDBJ%2C Best hit);ORF_evidence=Q5QMT0 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J023006J10;Oryzabase=12075;Expression=AK069177;TENOR=Os01t0508000-01;KEGG=Os01t0508000-01 (EC:3.2.1.21)
Chr01	irgsp1_rep	five_prime_UTR	17756115	17756272	.	+	.	Parent=Os01t0508000-01
Chr01	irgsp1_rep	CDS	17756273	17756543	.	+	0	Parent=Os01t0508000-01
Chr01	irgsp1_rep	CDS	17757412	17757470	.	+	2	Parent=Os01t0508000-01
Chr01	irgsp1_rep	CDS	17760769	17760844	.	+	0	Parent=Os01t0508000-01
Chr01	irgsp1_rep	CDS	17760965	17761036	.	+	2	Parent=Os01t0508000-01
Chr01	irgsp1_rep	CDS	17761165	17761252	.	+	2	Parent=Os01t0508000-01
Chr01	irgsp1_rep	CDS	17761684	17761924	.	+	1	Parent=Os01t0508000-01
Chr01	irgsp1_rep	CDS	17763352	17763467	.	+	0	Parent=Os01t0508000-01
Chr01	irgsp1_rep	CDS	17763695	17763912	.	+	1	Parent=Os01t0508000-01
Chr01	irgsp1_rep	CDS	17764101	17764132	.	+	2	Parent=Os01t0508000-01
Chr01	irgsp1_rep	CDS	17764229	17764331	.	+	0	Parent=Os01t0508000-01
Chr01	irgsp1_rep	CDS	17764422	17764696	.	+	2	Parent=Os01t0508000-01
Chr01	irgsp1_rep	three_prime_UTR	17764697	17764819	.	+	.	Parent=Os01t0508000-01
Chr01	irgsp1_rep	mRNA	17761229	17764800	.	+	.	ID=Os01t0508000-02;Name=Os01t0508000-02;Locus_id=Os01g0508000;CGSNL Gene Symbol=BGLU1;CGSNL Gene Name=BETA-GLUCOSIDASE 1;Oryzabase Gene Symbol Synonym(s)=Os1bglu1%2C Os1Bglu1;Oryzabase Gene Name Synonym(s)=beta-glucosidase 1;Note=Similar to Beta-mannosidase 2.;Transcript_evidence=AK060988 (DDBJ%2C Best hit);ORF_evidence=Q5QMT0 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=006-203-C08;Oryzabase=12075;Expression=AK060988;TENOR=Os01t0508000-02;KEGG=Os01t0508000-02 (EC:3.2.1.21)
Chr01	irgsp1_rep	five_prime_UTR	17761229	17761229	.	+	.	Parent=Os01t0508000-02
Chr01	irgsp1_rep	CDS	17761230	17761252	.	+	0	Parent=Os01t0508000-02
Chr01	irgsp1_rep	CDS	17761684	17761924	.	+	1	Parent=Os01t0508000-02
Chr01	irgsp1_rep	CDS	17763352	17763467	.	+	0	Parent=Os01t0508000-02
Chr01	irgsp1_rep	CDS	17763695	17763912	.	+	1	Parent=Os01t0508000-02
Chr01	irgsp1_rep	CDS	17764101	17764132	.	+	2	Parent=Os01t0508000-02
Chr01	irgsp1_rep	CDS	17764229	17764331	.	+	0	Parent=Os01t0508000-02
Chr01	irgsp1_rep	CDS	17764422	17764696	.	+	2	Parent=Os01t0508000-02
Chr01	irgsp1_rep	three_prime_UTR	17764697	17764800	.	+	.	Parent=Os01t0508000-02
Chr01	irgsp1_rep	mRNA	17756330	17761039	.	-	.	ID=Os01t0508050-00;Name=Os01t0508050-00;Locus_id=Os01g0508050;Note=Non-protein coding transcript.;Transcript_evidence=EU941508 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0508050-00
Chr01	irgsp1_rep	exon	17760811	17761039	.	-	.	Parent=Os01t0508050-00
Chr01	irgsp1_rep	exon	17756330	17756575	.	-	.	Parent=Os01t0508050-00
Chr01	irgsp1_rep	mRNA	17767883	17768453	.	+	.	ID=Os01t0508100-01;Name=Os01t0508100-01;Locus_id=Os01g0508100;Oryzabase Gene Symbol Synonym(s)=RH3;Oryzabase Gene Name Synonym(s)=NRR Repressor Homologue 3;Note=Ferritin/ribonucleotide reductase-like family protein.;Transcript_evidence=AK241819 (DDBJ%2C Best hit);ORF_evidence=NP_001043157.2 (RefSeq);NIAS_FLcDNA=J065211P06;Oryzabase=9823;TENOR=Os01t0508100-01;KEGG=Os01t0508100-01
Chr01	irgsp1_rep	CDS	17767883	17768371	.	+	0	Parent=Os01t0508100-01
Chr01	irgsp1_rep	three_prime_UTR	17768372	17768453	.	+	.	Parent=Os01t0508100-01
Chr01	irgsp1_rep	mRNA	17792209	17794497	.	+	.	ID=Os01t0508300-01;Name=Os01t0508300-01;Locus_id=Os01g0508300;Note=Conserved hypothetical protein.;Transcript_evidence=AK111287 (DDBJ%2C Best hit);ORF_evidence=Q5QM08 (UniProt);NIAS_FLcDNA=002-180-H10;TENOR=Os01t0508300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	17792209	17792489	.	+	.	Parent=Os01t0508300-01
Chr01	irgsp1_rep	CDS	17792490	17792657	.	+	0	Parent=Os01t0508300-01
Chr01	irgsp1_rep	three_prime_UTR	17792658	17792689	.	+	.	Parent=Os01t0508300-01
Chr01	irgsp1_rep	three_prime_UTR	17794158	17794497	.	+	.	Parent=Os01t0508300-01
Chr01	irgsp1_rep	mRNA	17792209	17794495	.	+	.	ID=Os01t0508300-02;Name=Os01t0508300-02;Locus_id=Os01g0508300;Note=Conserved hypothetical protein.;Transcript_evidence=AK101435 (DDBJ%2C Best hit);ORF_evidence=Q5QM08 (UniProt);NIAS_FLcDNA=J033039A01;TENOR=Os01t0508300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	17792209	17792489	.	+	.	Parent=Os01t0508300-02
Chr01	irgsp1_rep	CDS	17792490	17792657	.	+	0	Parent=Os01t0508300-02
Chr01	irgsp1_rep	three_prime_UTR	17792658	17794495	.	+	.	Parent=Os01t0508300-02
Chr01	irgsp1_rep	mRNA	17798266	17799004	.	+	.	ID=Os01t0508500-01;Name=Os01t0508500-01;Locus_id=Os01g0508500;Oryzabase Gene Symbol Synonym(s)=RH2;Oryzabase Gene Name Synonym(s)=NRR Repressor Homologue 2;Note=Conserved hypothetical protein.;Transcript_evidence=AK120501 (DDBJ%2C Best hit);ORF_evidence=B8A8W3 (UniProt);NIAS_FLcDNA=J013122F14;Oryzabase=9822;Expression=AK120501;TENOR=Os01t0508500-01;KEGG=Os01t0508500-01
Chr01	irgsp1_rep	five_prime_UTR	17798266	17798284	.	+	.	Parent=Os01t0508500-01
Chr01	irgsp1_rep	CDS	17798285	17798800	.	+	0	Parent=Os01t0508500-01
Chr01	irgsp1_rep	three_prime_UTR	17798801	17799004	.	+	.	Parent=Os01t0508500-01
Chr01	irgsp1_rep	mRNA	17859771	17860637	.	-	.	ID=Os01t0509400-01;Name=Os01t0509400-01;Locus_id=Os01g0509400;Oryzabase Gene Symbol Synonym(s)=OsCLE103%2C CLE103;Oryzabase Gene Name Synonym(s)=CLV3/ESR-related 103%2C CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 103;Note=Conserved hypothetical protein.;Transcript_evidence=AK111146 (DDBJ%2C Best hit);ORF_evidence=Q5QM11 (UniProt);NIAS_FLcDNA=002-176-E08;Oryzabase=14221;TENOR=Os01t0509400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	17860637	17860637	.	-	.	Parent=Os01t0509400-01
Chr01	irgsp1_rep	CDS	17860076	17860636	.	-	0	Parent=Os01t0509400-01
Chr01	irgsp1_rep	three_prime_UTR	17859771	17860075	.	-	.	Parent=Os01t0509400-01
Chr01	irgsp1_rep	mRNA	17881781	17885487	.	-	.	ID=Os01t0509700-01;Name=Os01t0509700-01;Locus_id=Os01g0509700;Note=Conserved hypothetical protein.;Transcript_evidence=AK105301 (DDBJ%2C Best hit);ORF_evidence=Q53MA2 (UniProt);NIAS_FLcDNA=001-117-A01;Expression=AK105301;TENOR=Os01t0509700-01;KEGG=Os01t0509700-01
Chr01	irgsp1_rep	five_prime_UTR	17885380	17885487	.	-	.	Parent=Os01t0509700-01
Chr01	irgsp1_rep	five_prime_UTR	17883921	17885231	.	-	.	Parent=Os01t0509700-01
Chr01	irgsp1_rep	five_prime_UTR	17883623	17883786	.	-	.	Parent=Os01t0509700-01
Chr01	irgsp1_rep	five_prime_UTR	17883358	17883405	.	-	.	Parent=Os01t0509700-01
Chr01	irgsp1_rep	CDS	17883346	17883357	.	-	0	Parent=Os01t0509700-01
Chr01	irgsp1_rep	CDS	17881990	17882148	.	-	0	Parent=Os01t0509700-01
Chr01	irgsp1_rep	three_prime_UTR	17881781	17881989	.	-	.	Parent=Os01t0509700-01
Chr01	irgsp1_rep	mRNA	17886583	17887008	.	-	.	ID=Os01t0509750-00;Name=Os01t0509750-00;Locus_id=Os01g0509750;Note=Similar to Anther-specific proline-rich protein APG.;Transcript_evidence=ab initio prediction;ORF_evidence=B6UBC0 (UniProt);TENOR=Os01t0509750-00;KEGG=Os01t0509750-00
Chr01	irgsp1_rep	CDS	17886583	17887008	.	-	0	Parent=Os01t0509750-00
Chr01	irgsp1_rep	mRNA	17892590	17892946	.	-	.	ID=Os01t0509800-00;Name=Os01t0509800-00;Locus_id=Os01g0509800;Note=Similar to Anther-specific proline-rich protein APG.;Transcript_evidence=ab initio prediction;ORF_evidence=B6TKM2 (UniProt);TENOR=Os01t0509800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	17892590	17892946	.	-	0	Parent=Os01t0509800-00
Chr01	irgsp1_rep	mRNA	17894912	17898610	.	+	.	ID=Os01t0509900-01;Name=Os01t0509900-01;Locus_id=Os01g0509900;Oryzabase Gene Symbol Synonym(s)=Os_F0780%2C OsFBX9;Note=F-box domain%2C Skp2-like domain containing protein.;Transcript_evidence=AK109797 (DDBJ%2C Best hit);ORF_evidence=B8A8W7 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-147-E08;Oryzabase=17440;Expression=AK109797;TENOR=Os01t0509900-01;KEGG=Os01t0509900-01
Chr01	irgsp1_rep	five_prime_UTR	17894912	17895089	.	+	.	Parent=Os01t0509900-01
Chr01	irgsp1_rep	CDS	17895090	17896170	.	+	0	Parent=Os01t0509900-01
Chr01	irgsp1_rep	CDS	17897684	17897775	.	+	2	Parent=Os01t0509900-01
Chr01	irgsp1_rep	CDS	17897857	17898006	.	+	0	Parent=Os01t0509900-01
Chr01	irgsp1_rep	CDS	17898098	17898415	.	+	0	Parent=Os01t0509900-01
Chr01	irgsp1_rep	three_prime_UTR	17898416	17898610	.	+	.	Parent=Os01t0509900-01
Chr01	irgsp1_rep	mRNA	17904834	17910037	.	+	.	ID=Os01t0510100-01;Name=Os01t0510100-01;Locus_id=Os01g0510100;RAP-DB Gene Symbol Synonym(s)=OsMKK6%2C OsMEK1;RAP-DB Gene Name Synonym(s)=mitogen activated protein kinase kinase 6;CGSNL Gene Symbol=MKK6;CGSNL Gene Name=MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6;Oryzabase Gene Symbol Synonym(s)=OsMKK6%2C OsMEK1%2C MEK1;Oryzabase Gene Name Synonym(s)=MAPK kinase 6;Note=Mitogen activated protein kinase kinase%2C MAPK kinase 6%2C Low-temperature response%2C Regulation of cold stress tolerance%2C Abiotic stress signaling%2C UV induced regulation of genes in phytoalexins biosynthesis;Transcript_evidence=AK059461;ORF_evidence=Q5QN75;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),Protein kinase domain (IPR000719),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=001-028-C11;Manual Curation=July 21%2C 2020;Literature_PMID=24295067,22248149,18619847,12177502;Oryzabase=8832;Expression=AK059461;TENOR=Os01t0510100-01;KEGG=Os01t0510100-01
Chr01	irgsp1_rep	five_prime_UTR	17904834	17905075	.	+	.	Parent=Os01t0510100-01
Chr01	irgsp1_rep	CDS	17905076	17905149	.	+	0	Parent=Os01t0510100-01
Chr01	irgsp1_rep	CDS	17905649	17905736	.	+	1	Parent=Os01t0510100-01
Chr01	irgsp1_rep	CDS	17906086	17906223	.	+	0	Parent=Os01t0510100-01
Chr01	irgsp1_rep	CDS	17906711	17906935	.	+	0	Parent=Os01t0510100-01
Chr01	irgsp1_rep	CDS	17907067	17907249	.	+	0	Parent=Os01t0510100-01
Chr01	irgsp1_rep	CDS	17907368	17907588	.	+	0	Parent=Os01t0510100-01
Chr01	irgsp1_rep	CDS	17909531	17909576	.	+	1	Parent=Os01t0510100-01
Chr01	irgsp1_rep	CDS	17909675	17909767	.	+	0	Parent=Os01t0510100-01
Chr01	irgsp1_rep	three_prime_UTR	17909768	17910037	.	+	.	Parent=Os01t0510100-01
Chr01	irgsp1_rep	mRNA	17911538	17912144	.	-	.	ID=Os01t0510200-01;Name=Os01t0510200-01;Locus_id=Os01g0510200;Note=Conserved hypothetical protein.;Transcript_evidence=AK062310 (DDBJ%2C Best hit);ORF_evidence=A2WQK8 (UniProt);NIAS_FLcDNA=001-101-B06;Expression=AK062310;TENOR=Os01t0510200-01;KEGG=Os01t0510200-01
Chr01	irgsp1_rep	five_prime_UTR	17912112	17912144	.	-	.	Parent=Os01t0510200-01
Chr01	irgsp1_rep	CDS	17911767	17912111	.	-	0	Parent=Os01t0510200-01
Chr01	irgsp1_rep	three_prime_UTR	17911538	17911766	.	-	.	Parent=Os01t0510200-01
Chr01	irgsp1_rep	mRNA	17945068	17947079	.	+	.	ID=Os01t0510500-01;Name=Os01t0510500-01;Locus_id=Os01g0510500;Note=Conserved hypothetical protein.;Transcript_evidence=AK064570 (DDBJ%2C Best hit);ORF_evidence=B9EX56 (UniProt);NIAS_FLcDNA=002-112-D08;TENOR=Os01t0510500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	17945068	17945068	.	+	.	Parent=Os01t0510500-01
Chr01	irgsp1_rep	CDS	17945069	17946673	.	+	0	Parent=Os01t0510500-01
Chr01	irgsp1_rep	three_prime_UTR	17946674	17947079	.	+	.	Parent=Os01t0510500-01
Chr01	irgsp1_rep	mRNA	17947850	17951625	.	-	.	ID=Os01t0510600-01;Name=Os01t0510600-01;Locus_id=Os01g0510600;RAP-DB Gene Symbol Synonym(s)=OsFLU1%2C OXP;RAP-DB Gene Name Synonym(s)=FLUORESCENT1%2C fluorescent 1%2C oxidation under photoperiod;Oryzabase Gene Symbol Synonym(s)=OsFLU1%2C FLU1;Oryzabase Gene Name Synonym(s)=fluorescent 1;Note=Homolog of fluorescent (FLU) in Arabidopsis thaliana%2C Tetratricopeptide repeat (TPR)-containing protein%2C Regulation  of chlorophyll biosynthesis;Transcript_evidence=AK072814,AK104796;ORF_evidence=Q8LRH2;GO=Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical domain superfamily (IPR011990),Tetratricopeptide repeat-containing domain (IPR013026);NIAS_FLcDNA=J023141A19,001-039-H05;Manual Curation=July 12%2C 2019;Literature_PMID=31290959;Oryzabase=21324;Expression=AK072814;TENOR=Os01t0510600-01;KEGG=Os01t0510600-01;Subcellular location=chloroplast (GO:0009507)
Chr01	irgsp1_rep	five_prime_UTR	17951587	17951625	.	-	.	Parent=Os01t0510600-01
Chr01	irgsp1_rep	CDS	17951472	17951586	.	-	0	Parent=Os01t0510600-01
Chr01	irgsp1_rep	CDS	17950552	17950730	.	-	2	Parent=Os01t0510600-01
Chr01	irgsp1_rep	CDS	17950184	17950340	.	-	0	Parent=Os01t0510600-01
Chr01	irgsp1_rep	CDS	17948633	17948953	.	-	2	Parent=Os01t0510600-01
Chr01	irgsp1_rep	CDS	17948151	17948353	.	-	2	Parent=Os01t0510600-01
Chr01	irgsp1_rep	three_prime_UTR	17947850	17948150	.	-	.	Parent=Os01t0510600-01
Chr01	irgsp1_rep	mRNA	17959629	17960325	.	+	.	ID=Os01t0510701-01;Name=Os01t0510701-01;Locus_id=Os01g0510701;Note=Hypothetical conserved gene.;Transcript_evidence=AK287548 (DDBJ%2C Best hit);ORF_evidence=Q8LRH0 (UniProt);NIAS_FLcDNA=J065018A08;TENOR=Os01t0510701-01;KEGG=Os01t0510701-01
Chr01	irgsp1_rep	CDS	17959629	17959769	.	+	0	Parent=Os01t0510701-01
Chr01	irgsp1_rep	three_prime_UTR	17959770	17959839	.	+	.	Parent=Os01t0510701-01
Chr01	irgsp1_rep	three_prime_UTR	17959939	17960325	.	+	.	Parent=Os01t0510701-01
Chr01	irgsp1_rep	mRNA	17960990	17968544	.	-	.	ID=Os01t0510800-01;Name=Os01t0510800-01;Locus_id=Os01g0510800;Oryzabase Gene Symbol Synonym(s)=TAF6;Oryzabase Gene Name Synonym(s)=TATA BOX BINDING PROTEIN-ASSOCIATED FACTOR 6;Note=Histone-fold domain containing protein.;Transcript_evidence=AK120931 (DDBJ%2C Best hit);ORF_evidence=NP_171987.1 (RefSeq);GO=Biological Process: transcription initiation%2C DNA-dependent (GO:0006352),Biological Process: regulation of sequence-specific DNA binding transcription factor activity (GO:0051090),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: binding (GO:0005488);InterPro=TATA box binding protein associated factor (TAF) (IPR004823),Histone-fold (IPR009072),Domain of unknown function DUF1546 (IPR011442),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023036C23;Oryzabase=19096;Expression=AK120931;TENOR=Os01t0510800-01;KEGG=Os01t0510800-01
Chr01	irgsp1_rep	five_prime_UTR	17968271	17968544	.	-	.	Parent=Os01t0510800-01
Chr01	irgsp1_rep	CDS	17968145	17968270	.	-	0	Parent=Os01t0510800-01
Chr01	irgsp1_rep	CDS	17966908	17966994	.	-	0	Parent=Os01t0510800-01
Chr01	irgsp1_rep	CDS	17965414	17965515	.	-	0	Parent=Os01t0510800-01
Chr01	irgsp1_rep	CDS	17965209	17965317	.	-	0	Parent=Os01t0510800-01
Chr01	irgsp1_rep	CDS	17964585	17964691	.	-	2	Parent=Os01t0510800-01
Chr01	irgsp1_rep	CDS	17964375	17964512	.	-	0	Parent=Os01t0510800-01
Chr01	irgsp1_rep	CDS	17964205	17964300	.	-	0	Parent=Os01t0510800-01
Chr01	irgsp1_rep	CDS	17963960	17964084	.	-	0	Parent=Os01t0510800-01
Chr01	irgsp1_rep	CDS	17962090	17962222	.	-	1	Parent=Os01t0510800-01
Chr01	irgsp1_rep	CDS	17961892	17962017	.	-	0	Parent=Os01t0510800-01
Chr01	irgsp1_rep	CDS	17961701	17961812	.	-	0	Parent=Os01t0510800-01
Chr01	irgsp1_rep	CDS	17961167	17961531	.	-	2	Parent=Os01t0510800-01
Chr01	irgsp1_rep	three_prime_UTR	17960990	17961166	.	-	.	Parent=Os01t0510800-01
Chr01	irgsp1_rep	mRNA	17967782	17973329	.	+	.	ID=Os01t0510901-01;Name=Os01t0510901-01;Locus_id=Os01g0510901;Note=Conserved hypothetical protein.;Transcript_evidence=AK288581 (DDBJ%2C Best hit);ORF_evidence=Q53KE6 (UniProt);NIAS_FLcDNA=J090049H15;TENOR=Os01t0510901-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	17967782	17970135	.	+	.	Parent=Os01t0510901-01
Chr01	irgsp1_rep	CDS	17970136	17970408	.	+	0	Parent=Os01t0510901-01
Chr01	irgsp1_rep	three_prime_UTR	17970409	17973329	.	+	.	Parent=Os01t0510901-01
Chr01	irgsp1_rep	mRNA	17975866	17977327	.	-	.	ID=Os01t0511000-01;Name=Os01t0511000-01;Locus_id=Os01g0511000;Note=Similar to LOB domain protein 40.;Transcript_evidence=AK071246 (DDBJ%2C Best hit);ORF_evidence=B9EX60 (UniProt);InterPro=Lateral organ boundaries%2C LOB (IPR004883);NIAS_FLcDNA=J023088C07;Expression=AK071246;TENOR=Os01t0511000-01;KEGG=Os01t0511000-01
Chr01	irgsp1_rep	five_prime_UTR	17977160	17977327	.	-	.	Parent=Os01t0511000-01
Chr01	irgsp1_rep	CDS	17976835	17977159	.	-	0	Parent=Os01t0511000-01
Chr01	irgsp1_rep	CDS	17976552	17976787	.	-	2	Parent=Os01t0511000-01
Chr01	irgsp1_rep	three_prime_UTR	17975866	17976551	.	-	.	Parent=Os01t0511000-01
Chr01	irgsp1_rep	mRNA	17990846	17993750	.	-	.	ID=Os01t0511100-01;Name=Os01t0511100-01;Locus_id=Os01g0511100;Note=UspA domain containing protein.;Transcript_evidence=AK070914 (DDBJ%2C Best hit);ORF_evidence=NP_001148498.1 (RefSeq);GO=Biological Process: response to stress (GO:0006950);InterPro=Universal stress protein A (IPR006015),UspA (IPR006016),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J023069J05;Expression=AK070914;TENOR=Os01t0511100-01;KEGG=Os01t0511100-01
Chr01	irgsp1_rep	five_prime_UTR	17993509	17993750	.	-	.	Parent=Os01t0511100-01
Chr01	irgsp1_rep	CDS	17993313	17993508	.	-	0	Parent=Os01t0511100-01
Chr01	irgsp1_rep	CDS	17993086	17993195	.	-	2	Parent=Os01t0511100-01
Chr01	irgsp1_rep	CDS	17992303	17992421	.	-	0	Parent=Os01t0511100-01
Chr01	irgsp1_rep	CDS	17991130	17991208	.	-	1	Parent=Os01t0511100-01
Chr01	irgsp1_rep	three_prime_UTR	17990846	17991129	.	-	.	Parent=Os01t0511100-01
Chr01	irgsp1_rep	mRNA	17994680	17997769	.	-	.	ID=Os01t0511200-01;Name=Os01t0511200-01;Locus_id=Os01g0511200;Note=Conserved hypothetical protein.;Transcript_evidence=AK058499 (DDBJ%2C Best hit);ORF_evidence=A2WQL5 (UniProt);NIAS_FLcDNA=001-016-F02;Expression=AK058499;TENOR=Os01t0511200-01;KEGG=Os01t0511200-01
Chr01	irgsp1_rep	five_prime_UTR	17997428	17997769	.	-	.	Parent=Os01t0511200-01
Chr01	irgsp1_rep	five_prime_UTR	17996475	17996487	.	-	.	Parent=Os01t0511200-01
Chr01	irgsp1_rep	CDS	17995674	17996474	.	-	0	Parent=Os01t0511200-01
Chr01	irgsp1_rep	three_prime_UTR	17995641	17995673	.	-	.	Parent=Os01t0511200-01
Chr01	irgsp1_rep	three_prime_UTR	17994680	17994960	.	-	.	Parent=Os01t0511200-01
Chr01	irgsp1_rep	mRNA	17999387	18002863	.	-	.	ID=Os01t0511300-01;Name=Os01t0511300-01;Locus_id=Os01g0511300;CGSNL Gene Symbol=RPN9A;CGSNL Gene Name=19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 9A;Oryzabase Gene Symbol Synonym(s)=OsRpn9a%2C Rpn9a;Oryzabase Gene Name Synonym(s)=19S regulatory particle non-ATPase subunit 9a%2C RP non-ATPase 9a;Note=Proteasome component region PCI domain containing protein.;Transcript_evidence=AK069825 (DDBJ%2C Best hit);ORF_evidence=NP_001152194.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Proteasome component (PCI) domain (IPR000717);NIAS_FLcDNA=J023028J18;Oryzabase=20568;Expression=AK069825;TENOR=Os01t0511300-01;KEGG=Os01t0511300-01
Chr01	irgsp1_rep	five_prime_UTR	18002812	18002863	.	-	.	Parent=Os01t0511300-01
Chr01	irgsp1_rep	CDS	18002665	18002811	.	-	0	Parent=Os01t0511300-01
Chr01	irgsp1_rep	CDS	18001937	18002383	.	-	0	Parent=Os01t0511300-01
Chr01	irgsp1_rep	CDS	18001727	18001807	.	-	0	Parent=Os01t0511300-01
Chr01	irgsp1_rep	CDS	18000810	18001006	.	-	0	Parent=Os01t0511300-01
Chr01	irgsp1_rep	CDS	18000615	18000714	.	-	1	Parent=Os01t0511300-01
Chr01	irgsp1_rep	CDS	17999691	17999876	.	-	0	Parent=Os01t0511300-01
Chr01	irgsp1_rep	three_prime_UTR	17999387	17999690	.	-	.	Parent=Os01t0511300-01
Chr01	irgsp1_rep	mRNA	18004602	18008011	.	+	.	ID=Os01t0511400-00;Name=Os01t0511400-00;Locus_id=Os01g0511400;Note=Similar to plant-specific domain TIGR01568 family protein.;Transcript_evidence=EU972618 (DDBJ);ORF_evidence=NP_001151878.1 (RefSeq);InterPro=Domain of unknown function DUF623 (IPR006458);TENOR=Os01t0511400-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	18004602	18005063	.	+	.	Parent=Os01t0511400-00
Chr01	irgsp1_rep	CDS	18005064	18005090	.	+	0	Parent=Os01t0511400-00
Chr01	irgsp1_rep	CDS	18007788	18007937	.	+	0	Parent=Os01t0511400-00
Chr01	irgsp1_rep	three_prime_UTR	18007938	18008011	.	+	.	Parent=Os01t0511400-00
Chr01	irgsp1_rep	mRNA	18013678	18017027	.	-	.	ID=Os01t0511600-01;Name=Os01t0511600-01;Locus_id=Os01g0511600;CGSNL Gene Symbol=PLGG1;CGSNL Gene Name=PLASTIDIC GLYCOLATE/GLYCERATE TRANSLOCATOR 1;Oryzabase Gene Symbol Synonym(s)=OsPLGG1;Oryzabase Gene Name Synonym(s)=plastidic glycolate/glycerate translocator 1;Note=Similar to lrgB-like family protein.;Transcript_evidence=AK072161 (DDBJ%2C Best hit);ORF_evidence=NP_001151575.1 (RefSeq);NIAS_FLcDNA=J013132P06;Oryzabase=23456;TENOR=Os01t0511600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	18016947	18017027	.	-	.	Parent=Os01t0511600-01
Chr01	irgsp1_rep	CDS	18016650	18016946	.	-	0	Parent=Os01t0511600-01
Chr01	irgsp1_rep	CDS	18016102	18016551	.	-	0	Parent=Os01t0511600-01
Chr01	irgsp1_rep	three_prime_UTR	18015108	18016101	.	-	.	Parent=Os01t0511600-01
Chr01	irgsp1_rep	three_prime_UTR	18014591	18015032	.	-	.	Parent=Os01t0511600-01
Chr01	irgsp1_rep	three_prime_UTR	18014319	18014448	.	-	.	Parent=Os01t0511600-01
Chr01	irgsp1_rep	three_prime_UTR	18013678	18013998	.	-	.	Parent=Os01t0511600-01
Chr01	irgsp1_rep	mRNA	18015349	18016404	.	-	.	ID=Os01t0511600-02;Name=Os01t0511600-02;Locus_id=Os01g0511600;CGSNL Gene Symbol=PLGG1;CGSNL Gene Name=PLASTIDIC GLYCOLATE/GLYCERATE TRANSLOCATOR 1;Oryzabase Gene Symbol Synonym(s)=OsPLGG1;Oryzabase Gene Name Synonym(s)=plastidic glycolate/glycerate translocator 1;Note=Similar to lrgB-like family protein.;Transcript_evidence=AK059042 (DDBJ%2C Best hit);ORF_evidence=NP_001151575.1 (RefSeq);NIAS_FLcDNA=001-021-D05;Oryzabase=23456;TENOR=Os01t0511600-02
Chr01	irgsp1_rep	CDS	18016236	18016404	.	-	0	Parent=Os01t0511600-02
Chr01	irgsp1_rep	CDS	18015349	18015601	.	-	2	Parent=Os01t0511600-02
Chr01	irgsp1_rep	mRNA	18013673	18017109	.	-	.	ID=Os01t0511600-03;Name=Os01t0511600-03;Locus_id=Os01g0511600;RAP-DB Gene Symbol Synonym(s)=OsPLGG1;RAP-DB Gene Name Synonym(s)=plastidic glycolate/glycerate translocator 1;CGSNL Gene Symbol=PLGG1;CGSNL Gene Name=PLASTIDIC GLYCOLATE/GLYCERATE TRANSLOCATOR 1;Oryzabase Gene Symbol Synonym(s)=OsPLGG1;Oryzabase Gene Name Synonym(s)=plastidic glycolate/glycerate translocator 1;Note=Plastidic glycolate/glycerate transporter%2C Photorespiration and plant growth;Transcript_evidence=XM_015773000;ORF_evidence=B9EX61;InterPro=CidB/LrgB family (IPR007300);Manual Curation=February 12%2C 2020;Literature_PMID=32038690;Oryzabase=23456;Subcellular location=chloroplast membrane (GO:0031969)
Chr01	irgsp1_rep	five_prime_UTR	18016947	18017109	.	-	.	Parent=Os01t0511600-03
Chr01	irgsp1_rep	CDS	18016650	18016946	.	-	0	Parent=Os01t0511600-03
Chr01	irgsp1_rep	CDS	18016236	18016551	.	-	0	Parent=Os01t0511600-03
Chr01	irgsp1_rep	CDS	18015340	18015601	.	-	2	Parent=Os01t0511600-03
Chr01	irgsp1_rep	CDS	18015108	18015223	.	-	1	Parent=Os01t0511600-03
Chr01	irgsp1_rep	CDS	18014923	18015032	.	-	2	Parent=Os01t0511600-03
Chr01	irgsp1_rep	CDS	18014591	18014768	.	-	0	Parent=Os01t0511600-03
Chr01	irgsp1_rep	CDS	18014319	18014448	.	-	2	Parent=Os01t0511600-03
Chr01	irgsp1_rep	CDS	18013848	18013998	.	-	1	Parent=Os01t0511600-03
Chr01	irgsp1_rep	five_prime_UTR	18013673	18013847	.	-	.	Parent=Os01t0511600-03
Chr01	irgsp1_rep	mRNA	18022167	18023518	.	+	.	ID=Os01t0511700-01;Name=Os01t0511700-01;Locus_id=Os01g0511700;Note=Conserved hypothetical protein.;Transcript_evidence=AK071691 (DDBJ%2C Best hit);ORF_evidence=B9EX62 (UniProt);NIAS_FLcDNA=J023108N21;TENOR=Os01t0511700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	18022167	18022168	.	+	.	Parent=Os01t0511700-01
Chr01	irgsp1_rep	CDS	18022169	18022369	.	+	0	Parent=Os01t0511700-01
Chr01	irgsp1_rep	three_prime_UTR	18022370	18023518	.	+	.	Parent=Os01t0511700-01
Chr01	irgsp1_rep	mRNA	18026557	18030344	.	-	.	ID=Os01t0511800-01;Name=Os01t0511800-01;Locus_id=Os01g0511800;Note=Conserved hypothetical protein.;Transcript_evidence=AK102912 (DDBJ%2C Best hit);ORF_evidence=Q6Z6S3 (UniProt);NIAS_FLcDNA=J033113K17;TENOR=Os01t0511800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	18029331	18030344	.	-	.	Parent=Os01t0511800-01
Chr01	irgsp1_rep	five_prime_UTR	18028472	18029234	.	-	.	Parent=Os01t0511800-01
Chr01	irgsp1_rep	CDS	18028262	18028471	.	-	0	Parent=Os01t0511800-01
Chr01	irgsp1_rep	three_prime_UTR	18027549	18028261	.	-	.	Parent=Os01t0511800-01
Chr01	irgsp1_rep	three_prime_UTR	18027023	18027084	.	-	.	Parent=Os01t0511800-01
Chr01	irgsp1_rep	three_prime_UTR	18026557	18026868	.	-	.	Parent=Os01t0511800-01
Chr01	irgsp1_rep	mRNA	18041761	18050083	.	+	.	ID=Os01t0512100-01;Name=Os01t0512100-01;Locus_id=Os01g0512100;Oryzabase Gene Symbol Synonym(s)=OsDjC7;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C7;Note=Similar to Chaperone protein dnaJ 15 (Protein ALTERED RESPONSE TO GRAVITY) (AtARG1) (AtJ15) (AtDjB15).;Transcript_evidence=AK111736 (DDBJ%2C Best hit);ORF_evidence=B4FR07 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=J023047L09;Oryzabase=12164;Expression=AK111736;TENOR=Os01t0512100-01;KEGG=Os01t0512100-01
Chr01	irgsp1_rep	five_prime_UTR	18041761	18041986	.	+	.	Parent=Os01t0512100-01
Chr01	irgsp1_rep	five_prime_UTR	18042096	18042109	.	+	.	Parent=Os01t0512100-01
Chr01	irgsp1_rep	CDS	18042110	18042240	.	+	0	Parent=Os01t0512100-01
Chr01	irgsp1_rep	CDS	18043256	18043379	.	+	1	Parent=Os01t0512100-01
Chr01	irgsp1_rep	CDS	18044120	18044202	.	+	0	Parent=Os01t0512100-01
Chr01	irgsp1_rep	CDS	18044292	18044403	.	+	1	Parent=Os01t0512100-01
Chr01	irgsp1_rep	CDS	18044475	18044579	.	+	0	Parent=Os01t0512100-01
Chr01	irgsp1_rep	CDS	18044694	18044744	.	+	0	Parent=Os01t0512100-01
Chr01	irgsp1_rep	CDS	18047494	18047583	.	+	0	Parent=Os01t0512100-01
Chr01	irgsp1_rep	CDS	18047667	18047775	.	+	0	Parent=Os01t0512100-01
Chr01	irgsp1_rep	CDS	18047850	18047998	.	+	2	Parent=Os01t0512100-01
Chr01	irgsp1_rep	CDS	18048096	18048149	.	+	0	Parent=Os01t0512100-01
Chr01	irgsp1_rep	CDS	18049702	18049905	.	+	0	Parent=Os01t0512100-01
Chr01	irgsp1_rep	three_prime_UTR	18049906	18050083	.	+	.	Parent=Os01t0512100-01
Chr01	irgsp1_rep	mRNA	18051553	18054687	.	+	.	ID=Os01t0512200-01;Name=Os01t0512200-01;Locus_id=Os01g0512200;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=AK070837 (DDBJ%2C Best hit);ORF_evidence=B9EX65 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: membrane coat (GO:0030117),Molecular Function: binding (GO:0005488);InterPro=Clathrin/coatomer adaptor%2C adaptin-like%2C N-terminal (IPR002553),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023075L04;Expression=AK070837;TENOR=Os01t0512200-01;KEGG=Os01t0512200-01
Chr01	irgsp1_rep	five_prime_UTR	18051553	18051612	.	+	.	Parent=Os01t0512200-01
Chr01	irgsp1_rep	CDS	18051613	18054450	.	+	0	Parent=Os01t0512200-01
Chr01	irgsp1_rep	three_prime_UTR	18054451	18054687	.	+	.	Parent=Os01t0512200-01
Chr01	irgsp1_rep	mRNA	18051797	18054679	.	+	.	ID=Os01t0512200-02;Name=Os01t0512200-02;Locus_id=Os01g0512200;Note=Clathrin/coatomer adaptor%2C adaptin-like%2C N-terminal domain containing protein.;Transcript_evidence=AK099665 (DDBJ%2C Best hit);ORF_evidence=B9EX65 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: membrane coat (GO:0030117),Molecular Function: binding (GO:0005488);InterPro=Clathrin/coatomer adaptor%2C adaptin-like%2C N-terminal (IPR002553),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013067C10;TENOR=Os01t0512200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	18051797	18051798	.	+	.	Parent=Os01t0512200-02
Chr01	irgsp1_rep	CDS	18051799	18053426	.	+	0	Parent=Os01t0512200-02
Chr01	irgsp1_rep	CDS	18053497	18053500	.	+	1	Parent=Os01t0512200-02
Chr01	irgsp1_rep	three_prime_UTR	18053501	18054679	.	+	.	Parent=Os01t0512200-02
Chr01	irgsp1_rep	mRNA	18062252	18062861	.	-	.	ID=Os01t0512400-01;Name=Os01t0512400-01;Locus_id=Os01g0512400;Note=Conserved hypothetical protein.;Transcript_evidence=AK058757 (DDBJ%2C Best hit);ORF_evidence=A2ZTQ1 (UniProt);NIAS_FLcDNA=001-001-B04;TENOR=Os01t0512400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	18062860	18062861	.	-	.	Parent=Os01t0512400-01
Chr01	irgsp1_rep	CDS	18062446	18062859	.	-	0	Parent=Os01t0512400-01
Chr01	irgsp1_rep	three_prime_UTR	18062252	18062445	.	-	.	Parent=Os01t0512400-01
Chr01	irgsp1_rep	mRNA	18073579	18074311	.	+	.	ID=Os01t0512700-00;Name=Os01t0512700-00;Locus_id=Os01g0512700;Note=Zinc finger%2C C2H2 domain containing protein.;Transcript_evidence=AK358069 (DDBJ);ORF_evidence=NP_001172374.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087);TENOR=Os01t0512700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	18073579	18074307	.	+	0	Parent=Os01t0512700-00
Chr01	irgsp1_rep	three_prime_UTR	18074308	18074311	.	+	.	Parent=Os01t0512700-00
Chr01	irgsp1_rep	mRNA	18077464	18078185	.	+	.	ID=Os01t0512800-00;Name=Os01t0512800-00;Locus_id=Os01g0512800;Note=CS-like domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8A8X9 (UniProt);InterPro=CS-like domain (IPR007052),SGS (IPR007699),HSP20-like chaperone (IPR008978),CS domain (IPR017447);TENOR=Os01t0512800-00
Chr01	irgsp1_rep	CDS	18077464	18077780	.	+	0	Parent=Os01t0512800-00
Chr01	irgsp1_rep	CDS	18077807	18078185	.	+	1	Parent=Os01t0512800-00
Chr01	irgsp1_rep	mRNA	18087603	18092828	.	-	.	ID=Os01t0513100-01;Name=Os01t0513100-01;Locus_id=Os01g0513100;Oryzabase Gene Symbol Synonym(s)=OsPP2C03%2C PP2C03%2C OsPP2C3%2C PP2C3%2C OsPP7;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C03%2C protein phosphatase 2C 03%2C protein phosphatase 2C3%2C protein phosphatase 2C 3%2C protein phosphatase 7;Note=Similar to Protein phosphatase 2C ABI2.;Transcript_evidence=AK059183 (DDBJ%2C Best hit);ORF_evidence=B6U1A8 (UniProt);NIAS_FLcDNA=001-023-G06;Oryzabase=17882;TENOR=Os01t0513100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	18092827	18092828	.	-	.	Parent=Os01t0513100-01
Chr01	irgsp1_rep	CDS	18092594	18092826	.	-	0	Parent=Os01t0513100-01
Chr01	irgsp1_rep	CDS	18087949	18088171	.	-	1	Parent=Os01t0513100-01
Chr01	irgsp1_rep	three_prime_UTR	18087603	18087948	.	-	.	Parent=Os01t0513100-01
Chr01	irgsp1_rep	mRNA	18101569	18111530	.	-	.	ID=Os01t0513200-01;Name=Os01t0513200-01;Locus_id=Os01g0513200;Note=Hypothetical conserved gene.;Transcript_evidence=AK288180 (DDBJ%2C Best hit);ORF_evidence=B9EX68 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial inner membrane (GO:0005743),Molecular Function: binding (GO:0005488);InterPro=Mitochondrial carrier protein (IPR002067),Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J090005C24;TENOR=Os01t0513200-01;KEGG=Os01t0513200-01
Chr01	irgsp1_rep	five_prime_UTR	18111095	18111530	.	-	.	Parent=Os01t0513200-01
Chr01	irgsp1_rep	CDS	18111013	18111094	.	-	0	Parent=Os01t0513200-01
Chr01	irgsp1_rep	CDS	18110783	18110881	.	-	2	Parent=Os01t0513200-01
Chr01	irgsp1_rep	CDS	18109322	18109443	.	-	2	Parent=Os01t0513200-01
Chr01	irgsp1_rep	three_prime_UTR	18108028	18109321	.	-	.	Parent=Os01t0513200-01
Chr01	irgsp1_rep	three_prime_UTR	18105303	18105415	.	-	.	Parent=Os01t0513200-01
Chr01	irgsp1_rep	three_prime_UTR	18103149	18103243	.	-	.	Parent=Os01t0513200-01
Chr01	irgsp1_rep	three_prime_UTR	18101569	18103042	.	-	.	Parent=Os01t0513200-01
Chr01	irgsp1_rep	mRNA	18124934	18128862	.	+	.	ID=Os01t0513400-01;Name=Os01t0513400-01;Locus_id=Os01g0513400;Note=Protein of unknown function DUF789 family protein.;Transcript_evidence=AK069619 (DDBJ%2C Best hit);ORF_evidence=B9EX69 (UniProt);InterPro=Protein of unknown function DUF789 (IPR008507);NIAS_FLcDNA=J023025D18;Expression=AK069619;TENOR=Os01t0513400-01;KEGG=Os01t0513400-01
Chr01	irgsp1_rep	five_prime_UTR	18124934	18125145	.	+	.	Parent=Os01t0513400-01
Chr01	irgsp1_rep	CDS	18125146	18125406	.	+	0	Parent=Os01t0513400-01
Chr01	irgsp1_rep	CDS	18125509	18125744	.	+	0	Parent=Os01t0513400-01
Chr01	irgsp1_rep	CDS	18126857	18127056	.	+	1	Parent=Os01t0513400-01
Chr01	irgsp1_rep	CDS	18127129	18127216	.	+	2	Parent=Os01t0513400-01
Chr01	irgsp1_rep	CDS	18127307	18127401	.	+	1	Parent=Os01t0513400-01
Chr01	irgsp1_rep	CDS	18128045	18128274	.	+	2	Parent=Os01t0513400-01
Chr01	irgsp1_rep	three_prime_UTR	18128275	18128862	.	+	.	Parent=Os01t0513400-01
Chr01	irgsp1_rep	mRNA	18130245	18131759	.	-	.	ID=Os01t0513500-01;Name=Os01t0513500-01;Locus_id=Os01g0513500;Note=Hypothetical gene.;Transcript_evidence=AK108600 (DDBJ%2C Best hit);ORF_evidence=Q5QNC9 (UniProt);NIAS_FLcDNA=002-146-E09;Expression=AK108600;TENOR=Os01t0513500-01;KEGG=Os01t0513500-01
Chr01	irgsp1_rep	five_prime_UTR	18131180	18131759	.	-	.	Parent=Os01t0513500-01
Chr01	irgsp1_rep	CDS	18130967	18131179	.	-	0	Parent=Os01t0513500-01
Chr01	irgsp1_rep	three_prime_UTR	18130245	18130966	.	-	.	Parent=Os01t0513500-01
Chr01	irgsp1_rep	mRNA	18135346	18138311	.	-	.	ID=Os01t0513700-01;Name=Os01t0513700-01;Locus_id=Os01g0513700;Note=Similar to trafficking protein particle complex subunit 1.;Transcript_evidence=AK058445 (DDBJ%2C Best hit);ORF_evidence=NP_001150411.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888),Cellular Component: cis-Golgi network (GO:0005801);InterPro=Sybindin-like protein (IPR007233),Longin-like (IPR011012);NIAS_FLcDNA=001-015-G05;Expression=AK058445;TENOR=Os01t0513700-01;KEGG=Os01t0513700-01
Chr01	irgsp1_rep	five_prime_UTR	18138217	18138311	.	-	.	Parent=Os01t0513700-01
Chr01	irgsp1_rep	CDS	18137963	18138216	.	-	0	Parent=Os01t0513700-01
Chr01	irgsp1_rep	CDS	18137077	18137191	.	-	1	Parent=Os01t0513700-01
Chr01	irgsp1_rep	CDS	18136819	18136937	.	-	0	Parent=Os01t0513700-01
Chr01	irgsp1_rep	CDS	18136045	18136096	.	-	1	Parent=Os01t0513700-01
Chr01	irgsp1_rep	three_prime_UTR	18136034	18136044	.	-	.	Parent=Os01t0513700-01
Chr01	irgsp1_rep	three_prime_UTR	18135346	18135546	.	-	.	Parent=Os01t0513700-01
Chr01	irgsp1_rep	mRNA	18135292	18138276	.	-	.	ID=Os01t0513700-02;Name=Os01t0513700-02;Locus_id=Os01g0513700;Note=Sybindin-like protein family protein.;Transcript_evidence=AK068877 (DDBJ%2C Best hit);ORF_evidence=NP_001150411.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888),Cellular Component: cis-Golgi network (GO:0005801);InterPro=Sybindin-like protein (IPR007233),Longin-like (IPR011012);NIAS_FLcDNA=J023001F01;Expression=AK068877;TENOR=Os01t0513700-02;KEGG=Os01t0513700-02
Chr01	irgsp1_rep	five_prime_UTR	18138217	18138276	.	-	.	Parent=Os01t0513700-02
Chr01	irgsp1_rep	CDS	18137963	18138216	.	-	0	Parent=Os01t0513700-02
Chr01	irgsp1_rep	CDS	18137077	18137191	.	-	1	Parent=Os01t0513700-02
Chr01	irgsp1_rep	CDS	18136819	18136937	.	-	0	Parent=Os01t0513700-02
Chr01	irgsp1_rep	CDS	18136045	18136099	.	-	1	Parent=Os01t0513700-02
Chr01	irgsp1_rep	three_prime_UTR	18136034	18136044	.	-	.	Parent=Os01t0513700-02
Chr01	irgsp1_rep	three_prime_UTR	18135292	18135546	.	-	.	Parent=Os01t0513700-02
Chr01	irgsp1_rep	mRNA	18140790	18142881	.	-	.	ID=Os01t0513800-01;Name=Os01t0513800-01;Locus_id=Os01g0513800;Note=Similar to Brix domain containing protein 1 homolog.;Transcript_evidence=AK100776 (DDBJ%2C Best hit);ORF_evidence=NP_001167679.1 (RefSeq);InterPro=Brix domain (IPR007109);NIAS_FLcDNA=J023120C10;Expression=AK100776;TENOR=Os01t0513800-01;KEGG=Os01t0513800-01
Chr01	irgsp1_rep	five_prime_UTR	18142744	18142881	.	-	.	Parent=Os01t0513800-01
Chr01	irgsp1_rep	CDS	18142672	18142743	.	-	0	Parent=Os01t0513800-01
Chr01	irgsp1_rep	CDS	18142374	18142577	.	-	0	Parent=Os01t0513800-01
Chr01	irgsp1_rep	CDS	18141805	18142050	.	-	0	Parent=Os01t0513800-01
Chr01	irgsp1_rep	CDS	18141483	18141719	.	-	0	Parent=Os01t0513800-01
Chr01	irgsp1_rep	CDS	18141266	18141331	.	-	0	Parent=Os01t0513800-01
Chr01	irgsp1_rep	CDS	18141067	18141174	.	-	0	Parent=Os01t0513800-01
Chr01	irgsp1_rep	three_prime_UTR	18140790	18141066	.	-	.	Parent=Os01t0513800-01
Chr01	irgsp1_rep	mRNA	18141082	18142581	.	+	.	ID=Os01t0513850-00;Name=Os01t0513850-00;Locus_id=Os01g0513850;Note=Hypothetical protein.;Transcript_evidence=tplb0026e12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0513850-00
Chr01	irgsp1_rep	five_prime_UTR	18141082	18141209	.	+	.	Parent=Os01t0513850-00
Chr01	irgsp1_rep	five_prime_UTR	18141454	18141721	.	+	.	Parent=Os01t0513850-00
Chr01	irgsp1_rep	five_prime_UTR	18141799	18141935	.	+	.	Parent=Os01t0513850-00
Chr01	irgsp1_rep	CDS	18141936	18142038	.	+	0	Parent=Os01t0513850-00
Chr01	irgsp1_rep	CDS	18142364	18142581	.	+	2	Parent=Os01t0513850-00
Chr01	irgsp1_rep	mRNA	18150939	18157844	.	+	.	ID=Os01t0513900-01;Name=Os01t0513900-01;Locus_id=Os01g0513900;Oryzabase Gene Symbol Synonym(s)=OsACK1%2C ACK1;Note=Similar to Kinesin heavy chain (Fragment).;Transcript_evidence=AK103077 (DDBJ%2C Best hit);ORF_evidence=Q93XG2 (UniProt);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752),Protein of unknown function DUF3490 (IPR021881);NIAS_FLcDNA=J033118E11;Oryzabase=22346;Expression=AK103077;TENOR=Os01t0513900-01;KEGG=Os01t0513900-01
Chr01	irgsp1_rep	five_prime_UTR	18150939	18151176	.	+	.	Parent=Os01t0513900-01
Chr01	irgsp1_rep	five_prime_UTR	18152219	18152286	.	+	.	Parent=Os01t0513900-01
Chr01	irgsp1_rep	CDS	18152287	18152533	.	+	0	Parent=Os01t0513900-01
Chr01	irgsp1_rep	CDS	18152688	18152777	.	+	2	Parent=Os01t0513900-01
Chr01	irgsp1_rep	CDS	18152863	18152963	.	+	2	Parent=Os01t0513900-01
Chr01	irgsp1_rep	CDS	18153065	18153178	.	+	0	Parent=Os01t0513900-01
Chr01	irgsp1_rep	CDS	18153272	18153353	.	+	0	Parent=Os01t0513900-01
Chr01	irgsp1_rep	CDS	18153483	18153550	.	+	2	Parent=Os01t0513900-01
Chr01	irgsp1_rep	CDS	18153638	18153697	.	+	0	Parent=Os01t0513900-01
Chr01	irgsp1_rep	CDS	18153776	18153900	.	+	0	Parent=Os01t0513900-01
Chr01	irgsp1_rep	CDS	18154554	18154752	.	+	1	Parent=Os01t0513900-01
Chr01	irgsp1_rep	CDS	18154833	18154964	.	+	0	Parent=Os01t0513900-01
Chr01	irgsp1_rep	CDS	18155043	18155135	.	+	0	Parent=Os01t0513900-01
Chr01	irgsp1_rep	CDS	18155251	18156135	.	+	0	Parent=Os01t0513900-01
Chr01	irgsp1_rep	CDS	18156230	18156555	.	+	0	Parent=Os01t0513900-01
Chr01	irgsp1_rep	CDS	18156894	18157236	.	+	1	Parent=Os01t0513900-01
Chr01	irgsp1_rep	three_prime_UTR	18157237	18157844	.	+	.	Parent=Os01t0513900-01
Chr01	irgsp1_rep	mRNA	18156852	18157164	.	-	.	ID=Os01t0513950-00;Name=Os01t0513950-00;Locus_id=Os01g0513950;Note=Hypothetical protein.;Transcript_evidence=EU942367 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0513950-00
Chr01	irgsp1_rep	CDS	18156943	18157164	.	-	0	Parent=Os01t0513950-00
Chr01	irgsp1_rep	three_prime_UTR	18156852	18156942	.	-	.	Parent=Os01t0513950-00
Chr01	irgsp1_rep	mRNA	18158750	18163519	.	-	.	ID=Os01t0514000-01;Name=Os01t0514000-01;Locus_id=Os01g0514000;Note=Similar to 50S ribosomal protein L24e.;Transcript_evidence=AK073707 (DDBJ%2C Best hit);ORF_evidence=NP_001151450.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L24e-related (IPR000988),TRASH (IPR011017),Ribosomal protein L24e domain (IPR023441),Ribosomal protein L24e%2C conserved site (IPR023442);NIAS_FLcDNA=J033055E08;Expression=AK073707;TENOR=Os01t0514000-01;KEGG=Os01t0514000-01
Chr01	irgsp1_rep	five_prime_UTR	18163467	18163519	.	-	.	Parent=Os01t0514000-01
Chr01	irgsp1_rep	five_prime_UTR	18163317	18163373	.	-	.	Parent=Os01t0514000-01
Chr01	irgsp1_rep	CDS	18163236	18163316	.	-	0	Parent=Os01t0514000-01
Chr01	irgsp1_rep	CDS	18159512	18159625	.	-	0	Parent=Os01t0514000-01
Chr01	irgsp1_rep	CDS	18159270	18159406	.	-	0	Parent=Os01t0514000-01
Chr01	irgsp1_rep	CDS	18159026	18159188	.	-	1	Parent=Os01t0514000-01
Chr01	irgsp1_rep	three_prime_UTR	18158750	18159025	.	-	.	Parent=Os01t0514000-01
Chr01	irgsp1_rep	mRNA	18158654	18159124	.	-	.	ID=Os01t0514000-02;Name=Os01t0514000-02;Locus_id=Os01g0514000;Note=Non-protein coding transcript.;Transcript_evidence=AK063801 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-121-F08;TENOR=Os01t0514000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	exon	18158654	18159124	.	-	.	Parent=Os01t0514000-02
Chr01	irgsp1_rep	mRNA	18163750	18173557	.	+	.	ID=Os01t0514300-01;Name=Os01t0514300-01;Locus_id=Os01g0514300;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=AK121086 (DDBJ%2C Best hit);ORF_evidence=NP_197125.2 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=LisH dimerisation motif (IPR006594),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),HEAT%2C type 2 (IPR021133);NIAS_FLcDNA=J023064M06;Expression=AK121086;TENOR=Os01t0514300-01;KEGG=Os01t0514300-01
Chr01	irgsp1_rep	five_prime_UTR	18163750	18163908	.	+	.	Parent=Os01t0514300-01
Chr01	irgsp1_rep	CDS	18163909	18164134	.	+	0	Parent=Os01t0514300-01
Chr01	irgsp1_rep	CDS	18164707	18164865	.	+	2	Parent=Os01t0514300-01
Chr01	irgsp1_rep	CDS	18165947	18166110	.	+	2	Parent=Os01t0514300-01
Chr01	irgsp1_rep	CDS	18166669	18166776	.	+	0	Parent=Os01t0514300-01
Chr01	irgsp1_rep	CDS	18167586	18167756	.	+	0	Parent=Os01t0514300-01
Chr01	irgsp1_rep	CDS	18167836	18168369	.	+	0	Parent=Os01t0514300-01
Chr01	irgsp1_rep	CDS	18168465	18168539	.	+	0	Parent=Os01t0514300-01
Chr01	irgsp1_rep	CDS	18168615	18168743	.	+	0	Parent=Os01t0514300-01
Chr01	irgsp1_rep	CDS	18168866	18168940	.	+	0	Parent=Os01t0514300-01
Chr01	irgsp1_rep	CDS	18169020	18169229	.	+	0	Parent=Os01t0514300-01
Chr01	irgsp1_rep	CDS	18169420	18169572	.	+	0	Parent=Os01t0514300-01
Chr01	irgsp1_rep	CDS	18169654	18169877	.	+	0	Parent=Os01t0514300-01
Chr01	irgsp1_rep	CDS	18170196	18170313	.	+	1	Parent=Os01t0514300-01
Chr01	irgsp1_rep	CDS	18170409	18170547	.	+	0	Parent=Os01t0514300-01
Chr01	irgsp1_rep	CDS	18170636	18170837	.	+	2	Parent=Os01t0514300-01
Chr01	irgsp1_rep	CDS	18170935	18171040	.	+	1	Parent=Os01t0514300-01
Chr01	irgsp1_rep	CDS	18171159	18171299	.	+	0	Parent=Os01t0514300-01
Chr01	irgsp1_rep	CDS	18171374	18171497	.	+	0	Parent=Os01t0514300-01
Chr01	irgsp1_rep	CDS	18171594	18171710	.	+	2	Parent=Os01t0514300-01
Chr01	irgsp1_rep	CDS	18172915	18173291	.	+	2	Parent=Os01t0514300-01
Chr01	irgsp1_rep	three_prime_UTR	18173292	18173557	.	+	.	Parent=Os01t0514300-01
Chr01	irgsp1_rep	mRNA	18176968	18177876	.	+	.	ID=Os01t0514450-00;Name=Os01t0514450-00;Locus_id=Os01g0514450;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK366574 (DDBJ);ORF_evidence=A2ZTR5 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);TENOR=Os01t0514450-00
Chr01	irgsp1_rep	CDS	18176968	18177876	.	+	0	Parent=Os01t0514450-00
Chr01	irgsp1_rep	mRNA	18186985	18193374	.	+	.	ID=Os01t0514600-01;Name=Os01t0514600-01;Locus_id=Os01g0514600;Note=Similar to Fimbrin 1 (AtFIM1).;Transcript_evidence=AK119316 (DDBJ%2C Best hit);ORF_evidence=NP_198420.1 (RefSeq);GO=Molecular Function: actin binding (GO:0003779),Molecular Function: protein binding (GO:0005515);InterPro=Actinin-type%2C actin-binding%2C conserved site (IPR001589),Calponin homology domain (IPR001715);NIAS_FLcDNA=001-130-H05;Expression=AK119316;TENOR=Os01t0514600-01;KEGG=Os01t0514600-01
Chr01	irgsp1_rep	five_prime_UTR	18186985	18187140	.	+	.	Parent=Os01t0514600-01
Chr01	irgsp1_rep	CDS	18187141	18187227	.	+	0	Parent=Os01t0514600-01
Chr01	irgsp1_rep	CDS	18187342	18187853	.	+	0	Parent=Os01t0514600-01
Chr01	irgsp1_rep	CDS	18187965	18188136	.	+	1	Parent=Os01t0514600-01
Chr01	irgsp1_rep	CDS	18188875	18188913	.	+	0	Parent=Os01t0514600-01
Chr01	irgsp1_rep	CDS	18189008	18189076	.	+	0	Parent=Os01t0514600-01
Chr01	irgsp1_rep	CDS	18189172	18189288	.	+	0	Parent=Os01t0514600-01
Chr01	irgsp1_rep	CDS	18189733	18189947	.	+	0	Parent=Os01t0514600-01
Chr01	irgsp1_rep	CDS	18190976	18191131	.	+	1	Parent=Os01t0514600-01
Chr01	irgsp1_rep	CDS	18191219	18191418	.	+	1	Parent=Os01t0514600-01
Chr01	irgsp1_rep	CDS	18191818	18191975	.	+	2	Parent=Os01t0514600-01
Chr01	irgsp1_rep	CDS	18192212	18192308	.	+	0	Parent=Os01t0514600-01
Chr01	irgsp1_rep	CDS	18192629	18192720	.	+	2	Parent=Os01t0514600-01
Chr01	irgsp1_rep	CDS	18192909	18193082	.	+	0	Parent=Os01t0514600-01
Chr01	irgsp1_rep	three_prime_UTR	18193083	18193374	.	+	.	Parent=Os01t0514600-01
Chr01	irgsp1_rep	mRNA	18205177	18208214	.	+	.	ID=Os01t0514700-01;Name=Os01t0514700-01;Locus_id=Os01g0514700;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK069218 (DDBJ%2C Best hit);ORF_evidence=Q9ZU46 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Tyrosine-protein kinase%2C active site (IPR008266),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023010O06;Expression=AK069218;TENOR=Os01t0514700-01;KEGG=Os01t0514700-01
Chr01	irgsp1_rep	five_prime_UTR	18205177	18205234	.	+	.	Parent=Os01t0514700-01
Chr01	irgsp1_rep	CDS	18205235	18206702	.	+	0	Parent=Os01t0514700-01
Chr01	irgsp1_rep	CDS	18207125	18207774	.	+	2	Parent=Os01t0514700-01
Chr01	irgsp1_rep	three_prime_UTR	18207775	18208214	.	+	.	Parent=Os01t0514700-01
Chr01	irgsp1_rep	mRNA	18205238	18208057	.	-	.	ID=Os01t0514850-00;Name=Os01t0514850-00;Locus_id=Os01g0514850;Note=Hypothetical protein.;Transcript_evidence=tplb0023b14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0514850-00
Chr01	irgsp1_rep	five_prime_UTR	18207138	18208057	.	-	.	Parent=Os01t0514850-00
Chr01	irgsp1_rep	five_prime_UTR	18206611	18206712	.	-	.	Parent=Os01t0514850-00
Chr01	irgsp1_rep	CDS	18206254	18206610	.	-	0	Parent=Os01t0514850-00
Chr01	irgsp1_rep	three_prime_UTR	18205238	18206253	.	-	.	Parent=Os01t0514850-00
Chr01	irgsp1_rep	mRNA	18229321	18233091	.	+	.	ID=Os01t0515300-01;Name=Os01t0515300-01;Locus_id=Os01g0515300;Note=Similar to Leucine Rich Repeat family protein.;Transcript_evidence=AK111708 (DDBJ%2C Best hit);ORF_evidence=Q7XH57 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J023022C01;TENOR=Os01t0515300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	18229321	18229321	.	+	.	Parent=Os01t0515300-01
Chr01	irgsp1_rep	CDS	18229322	18230935	.	+	0	Parent=Os01t0515300-01
Chr01	irgsp1_rep	three_prime_UTR	18230936	18232328	.	+	.	Parent=Os01t0515300-01
Chr01	irgsp1_rep	three_prime_UTR	18232447	18233091	.	+	.	Parent=Os01t0515300-01
Chr01	irgsp1_rep	mRNA	18259513	18267127	.	+	.	ID=Os01t0516200-00;Name=Os01t0516200-00;Locus_id=Os01g0516200;Note=Similar to Stress-responsive protein.;Transcript_evidence=FP092638 (DDBJ);ORF_evidence=Q7XBH1 (UniProt);InterPro=Dimeric alpha-beta barrel (IPR011008),Stress responsive alpha-beta barrel (IPR013097);TENOR=Os01t0516200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	18259513	18259564	.	+	.	Parent=Os01t0516200-00
Chr01	irgsp1_rep	CDS	18259565	18259894	.	+	0	Parent=Os01t0516200-00
Chr01	irgsp1_rep	CDS	18264551	18264589	.	+	0	Parent=Os01t0516200-00
Chr01	irgsp1_rep	three_prime_UTR	18264590	18265171	.	+	.	Parent=Os01t0516200-00
Chr01	irgsp1_rep	three_prime_UTR	18266514	18267127	.	+	.	Parent=Os01t0516200-00
Chr01	irgsp1_rep	mRNA	18284605	18288878	.	+	.	ID=Os01t0516600-01;Name=Os01t0516600-01;Locus_id=Os01g0516600;Note=Similar to Stable protein 1.;Transcript_evidence=AK065802 (DDBJ%2C Best hit);ORF_evidence=Q7XBH1 (UniProt);InterPro=Dimeric alpha-beta barrel (IPR011008),Stress responsive alpha-beta barrel (IPR013097);NIAS_FLcDNA=J013036O21;Expression=AK065802;TENOR=Os01t0516600-01;KEGG=Os01t0516600-01
Chr01	irgsp1_rep	five_prime_UTR	18284605	18284769	.	+	.	Parent=Os01t0516600-01
Chr01	irgsp1_rep	CDS	18284770	18284918	.	+	0	Parent=Os01t0516600-01
Chr01	irgsp1_rep	CDS	18286806	18286998	.	+	1	Parent=Os01t0516600-01
Chr01	irgsp1_rep	three_prime_UTR	18286999	18288878	.	+	.	Parent=Os01t0516600-01
Chr01	irgsp1_rep	mRNA	18284632	18287130	.	+	.	ID=Os01t0516600-02;Name=Os01t0516600-02;Locus_id=Os01g0516600;Note=Similar to Stable protein 1.;Transcript_evidence=AK063717 (DDBJ%2C Best hit);ORF_evidence=Q7XBH1 (UniProt);InterPro=Dimeric alpha-beta barrel (IPR011008),Stress responsive alpha-beta barrel (IPR013097);NIAS_FLcDNA=001-120-C07;Expression=AK063717;TENOR=Os01t0516600-02;KEGG=Os01t0516600-02
Chr01	irgsp1_rep	five_prime_UTR	18284632	18284769	.	+	.	Parent=Os01t0516600-02
Chr01	irgsp1_rep	CDS	18284770	18284918	.	+	0	Parent=Os01t0516600-02
Chr01	irgsp1_rep	CDS	18286806	18286998	.	+	1	Parent=Os01t0516600-02
Chr01	irgsp1_rep	three_prime_UTR	18286999	18287130	.	+	.	Parent=Os01t0516600-02
Chr01	irgsp1_rep	mRNA	18295549	18303762	.	+	.	ID=Os01t0516625-00;Name=Os01t0516625-00;Locus_id=Os01g0516625;Note=Hypothetical protein.;Transcript_evidence=tplb0037m07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0516625-00
Chr01	irgsp1_rep	five_prime_UTR	18295549	18295911	.	+	.	Parent=Os01t0516625-00
Chr01	irgsp1_rep	five_prime_UTR	18299785	18299983	.	+	.	Parent=Os01t0516625-00
Chr01	irgsp1_rep	five_prime_UTR	18301048	18301164	.	+	.	Parent=Os01t0516625-00
Chr01	irgsp1_rep	five_prime_UTR	18302957	18303300	.	+	.	Parent=Os01t0516625-00
Chr01	irgsp1_rep	CDS	18303301	18303522	.	+	0	Parent=Os01t0516625-00
Chr01	irgsp1_rep	three_prime_UTR	18303523	18303762	.	+	.	Parent=Os01t0516625-00
Chr01	irgsp1_rep	mRNA	18298221	18303977	.	-	.	ID=Os01t0516700-01;Name=Os01t0516700-01;Locus_id=Os01g0516700;Note=Similar to glycosyltransferase family 28 C-terminal domain containing protein.;Transcript_evidence=AK242938 (DDBJ%2C Best hit);ORF_evidence=NP_001149881.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: UDP-N-acetylgalactosamine biosynthetic process (GO:0019277),Biological Process: lipid glycosylation (GO:0030259),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758),Molecular Function: carbohydrate binding (GO:0030246),Molecular Function: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity (GO:0050511);InterPro=Glycosyl transferase%2C family 28 (IPR004276),N-acetylglucosaminyltransferase%2C MurG (IPR006009),Glycosyl transferase%2C family 28%2C C-terminal (IPR007235);NIAS_FLcDNA=J090087C24;TENOR=Os01t0516700-01;KEGG=Os01t0516700-01 (EC:2.4.1.227)
Chr01	irgsp1_rep	five_prime_UTR	18303897	18303977	.	-	.	Parent=Os01t0516700-01
Chr01	irgsp1_rep	CDS	18302959	18303896	.	-	0	Parent=Os01t0516700-01
Chr01	irgsp1_rep	CDS	18300989	18301166	.	-	1	Parent=Os01t0516700-01
Chr01	irgsp1_rep	three_prime_UTR	18299858	18300988	.	-	.	Parent=Os01t0516700-01
Chr01	irgsp1_rep	three_prime_UTR	18298221	18298969	.	-	.	Parent=Os01t0516700-01
Chr01	irgsp1_rep	mRNA	18306492	18335584	.	-	.	ID=Os01t0516900-00;Name=Os01t0516900-00;Locus_id=Os01g0516900;CGSNL Gene Symbol=PDR14;CGSNL Gene Name=PLEIOTROPIC DRUG RESISTANCE 14;Oryzabase Gene Symbol Synonym(s)=OsABCG33%2C OsPDR14;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 33%2C pleiotropic drug resistance 14;Note=ABC transporter-like domain containing protein.;Transcript_evidence=AK335724 (DDBJ);ORF_evidence=NP_001172377.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC-2 type transporter (IPR013525),Plant PDR ABC transporter associated (IPR013581),ABC transporter%2C conserved site (IPR017871);Oryzabase=12009;TENOR=Os01t0516900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	18335499	18335584	.	-	0	Parent=Os01t0516900-00
Chr01	irgsp1_rep	CDS	18335290	18335413	.	-	1	Parent=Os01t0516900-00
Chr01	irgsp1_rep	CDS	18334972	18335063	.	-	0	Parent=Os01t0516900-00
Chr01	irgsp1_rep	CDS	18334099	18334183	.	-	1	Parent=Os01t0516900-00
Chr01	irgsp1_rep	CDS	18333463	18333622	.	-	0	Parent=Os01t0516900-00
Chr01	irgsp1_rep	CDS	18332928	18332994	.	-	2	Parent=Os01t0516900-00
Chr01	irgsp1_rep	CDS	18329350	18329513	.	-	1	Parent=Os01t0516900-00
Chr01	irgsp1_rep	CDS	18328557	18328858	.	-	2	Parent=Os01t0516900-00
Chr01	irgsp1_rep	CDS	18328208	18328480	.	-	0	Parent=Os01t0516900-00
Chr01	irgsp1_rep	CDS	18327402	18327715	.	-	0	Parent=Os01t0516900-00
Chr01	irgsp1_rep	CDS	18326566	18326726	.	-	1	Parent=Os01t0516900-00
Chr01	irgsp1_rep	CDS	18326373	18326476	.	-	2	Parent=Os01t0516900-00
Chr01	irgsp1_rep	CDS	18326114	18326290	.	-	0	Parent=Os01t0516900-00
Chr01	irgsp1_rep	three_prime_UTR	18325839	18326113	.	-	.	Parent=Os01t0516900-00
Chr01	irgsp1_rep	three_prime_UTR	18325412	18325744	.	-	.	Parent=Os01t0516900-00
Chr01	irgsp1_rep	three_prime_UTR	18324492	18324782	.	-	.	Parent=Os01t0516900-00
Chr01	irgsp1_rep	three_prime_UTR	18324334	18324417	.	-	.	Parent=Os01t0516900-00
Chr01	irgsp1_rep	three_prime_UTR	18307614	18307747	.	-	.	Parent=Os01t0516900-00
Chr01	irgsp1_rep	three_prime_UTR	18306492	18306710	.	-	.	Parent=Os01t0516900-00
Chr01	irgsp1_rep	mRNA	18352836	18354506	.	-	.	ID=Os01t0517500-01;Name=Os01t0517500-01;Locus_id=Os01g0517500;Oryzabase Gene Symbol Synonym(s)=OsPGL3%2C PGL3;Oryzabase Gene Name Synonym(s)=Polygalacturonases-Like 3%2C PG-like 3;Note=Similar to Polygalacturonase (Fragment).;Transcript_evidence=AK069989 (DDBJ%2C Best hit);ORF_evidence=B6TAW9 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=J023037D20;Oryzabase=22280;Expression=AK069989;TENOR=Os01t0517500-01;KEGG=Os01t0517500-01
Chr01	irgsp1_rep	five_prime_UTR	18354460	18354506	.	-	.	Parent=Os01t0517500-01
Chr01	irgsp1_rep	CDS	18354274	18354459	.	-	0	Parent=Os01t0517500-01
Chr01	irgsp1_rep	CDS	18353863	18354150	.	-	0	Parent=Os01t0517500-01
Chr01	irgsp1_rep	CDS	18353022	18353771	.	-	0	Parent=Os01t0517500-01
Chr01	irgsp1_rep	three_prime_UTR	18352836	18353021	.	-	.	Parent=Os01t0517500-01
Chr01	irgsp1_rep	mRNA	18364957	18366441	.	-	.	ID=Os01t0517800-01;Name=Os01t0517800-01;Locus_id=Os01g0517800;Note=Hypothetical conserved gene.;Transcript_evidence=AK242309 (DDBJ%2C Best hit);ORF_evidence=NP_001043200.1 (RefSeq);InterPro=Protein of unknown function DUF597 (IPR006734);NIAS_FLcDNA=J075194B21;TENOR=Os01t0517800-01;KEGG=Os01t0517800-01
Chr01	irgsp1_rep	five_prime_UTR	18366411	18366441	.	-	.	Parent=Os01t0517800-01
Chr01	irgsp1_rep	CDS	18366222	18366410	.	-	0	Parent=Os01t0517800-01
Chr01	irgsp1_rep	CDS	18365638	18365964	.	-	0	Parent=Os01t0517800-01
Chr01	irgsp1_rep	three_prime_UTR	18364957	18365637	.	-	.	Parent=Os01t0517800-01
Chr01	irgsp1_rep	mRNA	18370910	18372056	.	+	.	ID=Os01t0517900-00;Name=Os01t0517900-00;Locus_id=Os01g0517900;Note=Similar to Luminal binding protein.;Transcript_evidence=AY914601 (DDBJ);ORF_evidence=D2D326 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Heat shock protein Hsp70 (IPR001023),Heat shock protein 70 (IPR013126);TENOR=Os01t0517900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	18370910	18371309	.	+	0	Parent=Os01t0517900-00
Chr01	irgsp1_rep	CDS	18371392	18372056	.	+	2	Parent=Os01t0517900-00
Chr01	irgsp1_rep	mRNA	18374765	18376668	.	-	.	ID=Os01t0518000-01;Name=Os01t0518000-01;Locus_id=Os01g0518000;Note=Protein of unknown function DUF597 family protein.;Transcript_evidence=AK242682 (DDBJ%2C Best hit);ORF_evidence=F1DJR5 (UniProt);InterPro=Protein of unknown function DUF597 (IPR006734);NIAS_FLcDNA=J090033F14;TENOR=Os01t0518000-01;KEGG=Os01t0518000-01
Chr01	irgsp1_rep	five_prime_UTR	18376625	18376668	.	-	.	Parent=Os01t0518000-01
Chr01	irgsp1_rep	CDS	18376433	18376624	.	-	0	Parent=Os01t0518000-01
Chr01	irgsp1_rep	CDS	18375487	18375726	.	-	0	Parent=Os01t0518000-01
Chr01	irgsp1_rep	CDS	18374963	18375184	.	-	0	Parent=Os01t0518000-01
Chr01	irgsp1_rep	three_prime_UTR	18374765	18374962	.	-	.	Parent=Os01t0518000-01
Chr01	irgsp1_rep	mRNA	18386243	18386927	.	-	.	ID=Os01t0518300-00;Name=Os01t0518300-00;Locus_id=Os01g0518300;Oryzabase Gene Symbol Synonym(s)=OsbHLH183%2C bHLH183;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 183;Note=Conserved hypothetical protein.;Transcript_evidence=EU965379 (DDBJ);ORF_evidence=Q8LQ30 (UniProt);Oryzabase=22854;TENOR=Os01t0518300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	18386750	18386927	.	-	0	Parent=Os01t0518300-00
Chr01	irgsp1_rep	CDS	18386243	18386652	.	-	2	Parent=Os01t0518300-00
Chr01	irgsp1_rep	mRNA	18390223	18394126	.	+	.	ID=Os01t0518400-01;Name=Os01t0518400-01;Locus_id=Os01g0518400;Note=Similar to Transposon protein.;Transcript_evidence=AK069603 (DDBJ%2C Best hit);ORF_evidence=B6SRN0 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Zinc finger%2C BED-type predicted (IPR003656),HAT dimerisation (IPR008906),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J023024D15;TENOR=Os01t0518400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	18390223	18390398	.	+	.	Parent=Os01t0518400-01
Chr01	irgsp1_rep	five_prime_UTR	18391920	18391952	.	+	.	Parent=Os01t0518400-01
Chr01	irgsp1_rep	CDS	18391953	18394007	.	+	0	Parent=Os01t0518400-01
Chr01	irgsp1_rep	three_prime_UTR	18394008	18394126	.	+	.	Parent=Os01t0518400-01
Chr01	irgsp1_rep	mRNA	18394382	18401686	.	-	.	ID=Os01t0518500-01;Name=Os01t0518500-01;Locus_id=Os01g0518500;CGSNL Gene Symbol=GH27;CGSNL Gene Name=GLYCOSIDE HYDROLASE 27;Oryzabase Gene Symbol Synonym(s)=OsGH27;Oryzabase Gene Name Synonym(s)=Glycoside hydrolase 27;Note=Glycoside hydrolase%2C family 27 protein.;Transcript_evidence=AK067743 (DDBJ%2C Best hit);ORF_evidence=NP_189269.2 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Ricin B lectin (IPR000772),Glycoside hydrolase%2C family 27 (IPR002241),Glycosyl hydrolase%2C family 13%2C all-beta (IPR013780),Aldolase-type TIM barrel (IPR013785),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J013116P20;Oryzabase=23617;Expression=AK067743;TENOR=Os01t0518500-01;KEGG=Os01t0518500-01
Chr01	irgsp1_rep	five_prime_UTR	18401604	18401686	.	-	.	Parent=Os01t0518500-01
Chr01	irgsp1_rep	CDS	18401518	18401603	.	-	0	Parent=Os01t0518500-01
Chr01	irgsp1_rep	CDS	18400585	18400732	.	-	1	Parent=Os01t0518500-01
Chr01	irgsp1_rep	CDS	18400222	18400479	.	-	0	Parent=Os01t0518500-01
Chr01	irgsp1_rep	CDS	18398694	18398868	.	-	0	Parent=Os01t0518500-01
Chr01	irgsp1_rep	CDS	18398477	18398538	.	-	2	Parent=Os01t0518500-01
Chr01	irgsp1_rep	CDS	18398238	18398401	.	-	0	Parent=Os01t0518500-01
Chr01	irgsp1_rep	CDS	18397981	18398078	.	-	1	Parent=Os01t0518500-01
Chr01	irgsp1_rep	CDS	18397174	18397232	.	-	2	Parent=Os01t0518500-01
Chr01	irgsp1_rep	CDS	18396960	18397094	.	-	0	Parent=Os01t0518500-01
Chr01	irgsp1_rep	CDS	18396630	18396883	.	-	0	Parent=Os01t0518500-01
Chr01	irgsp1_rep	CDS	18396399	18396558	.	-	1	Parent=Os01t0518500-01
Chr01	irgsp1_rep	CDS	18395912	18395993	.	-	0	Parent=Os01t0518500-01
Chr01	irgsp1_rep	CDS	18395778	18395828	.	-	2	Parent=Os01t0518500-01
Chr01	irgsp1_rep	CDS	18394496	18394713	.	-	2	Parent=Os01t0518500-01
Chr01	irgsp1_rep	three_prime_UTR	18394382	18394495	.	-	.	Parent=Os01t0518500-01
Chr01	irgsp1_rep	mRNA	18394242	18401664	.	-	.	ID=Os01t0518500-02;Name=Os01t0518500-02;Locus_id=Os01g0518500;CGSNL Gene Symbol=GH27;CGSNL Gene Name=GLYCOSIDE HYDROLASE 27;Oryzabase Gene Symbol Synonym(s)=OsGH27;Oryzabase Gene Name Synonym(s)=Glycoside hydrolase 27;Note=Glycoside hydrolase%2C family 27 protein.;Transcript_evidence=AK072383 (DDBJ%2C Best hit);ORF_evidence=NP_189269.2 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Ricin B lectin (IPR000772),Glycoside hydrolase%2C family 27 (IPR002241),Glycosyl hydrolase%2C family 13%2C all-beta (IPR013780),Aldolase-type TIM barrel (IPR013785),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J023078M11;Oryzabase=23617;Expression=AK072383;TENOR=Os01t0518500-02;KEGG=Os01t0518500-02
Chr01	irgsp1_rep	five_prime_UTR	18401604	18401664	.	-	.	Parent=Os01t0518500-02
Chr01	irgsp1_rep	CDS	18401518	18401603	.	-	0	Parent=Os01t0518500-02
Chr01	irgsp1_rep	CDS	18400585	18400732	.	-	1	Parent=Os01t0518500-02
Chr01	irgsp1_rep	CDS	18400222	18400479	.	-	0	Parent=Os01t0518500-02
Chr01	irgsp1_rep	CDS	18398694	18398868	.	-	0	Parent=Os01t0518500-02
Chr01	irgsp1_rep	CDS	18398477	18398538	.	-	2	Parent=Os01t0518500-02
Chr01	irgsp1_rep	CDS	18398238	18398401	.	-	0	Parent=Os01t0518500-02
Chr01	irgsp1_rep	CDS	18397981	18398078	.	-	1	Parent=Os01t0518500-02
Chr01	irgsp1_rep	CDS	18397174	18397232	.	-	2	Parent=Os01t0518500-02
Chr01	irgsp1_rep	CDS	18396960	18397094	.	-	0	Parent=Os01t0518500-02
Chr01	irgsp1_rep	CDS	18396630	18396883	.	-	0	Parent=Os01t0518500-02
Chr01	irgsp1_rep	CDS	18396399	18396558	.	-	1	Parent=Os01t0518500-02
Chr01	irgsp1_rep	CDS	18395912	18395993	.	-	0	Parent=Os01t0518500-02
Chr01	irgsp1_rep	CDS	18395778	18395828	.	-	2	Parent=Os01t0518500-02
Chr01	irgsp1_rep	CDS	18394496	18394713	.	-	2	Parent=Os01t0518500-02
Chr01	irgsp1_rep	three_prime_UTR	18394242	18394495	.	-	.	Parent=Os01t0518500-02
Chr01	irgsp1_rep	mRNA	18394494	18401646	.	+	.	ID=Os01t0518550-00;Name=Os01t0518550-00;Locus_id=Os01g0518550;Note=Non-protein coding transcript.;Transcript_evidence=tplb0035g14 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os01t0518550-00
Chr01	irgsp1_rep	exon	18394494	18394748	.	+	.	Parent=Os01t0518550-00
Chr01	irgsp1_rep	exon	18395909	18395998	.	+	.	Parent=Os01t0518550-00
Chr01	irgsp1_rep	exon	18396407	18396527	.	+	.	Parent=Os01t0518550-00
Chr01	irgsp1_rep	exon	18396597	18396868	.	+	.	Parent=Os01t0518550-00
Chr01	irgsp1_rep	exon	18396939	18397087	.	+	.	Parent=Os01t0518550-00
Chr01	irgsp1_rep	exon	18397167	18397214	.	+	.	Parent=Os01t0518550-00
Chr01	irgsp1_rep	exon	18397962	18398080	.	+	.	Parent=Os01t0518550-00
Chr01	irgsp1_rep	exon	18398242	18398431	.	+	.	Parent=Os01t0518550-00
Chr01	irgsp1_rep	exon	18398655	18398861	.	+	.	Parent=Os01t0518550-00
Chr01	irgsp1_rep	exon	18400211	18400477	.	+	.	Parent=Os01t0518550-00
Chr01	irgsp1_rep	exon	18400582	18400739	.	+	.	Parent=Os01t0518550-00
Chr01	irgsp1_rep	exon	18401529	18401646	.	+	.	Parent=Os01t0518550-00
Chr01	irgsp1_rep	mRNA	18405728	18408073	.	-	.	ID=Os01t0518651-00;Name=Os01t0518651-00;Locus_id=Os01g0518651;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=EU945807 (DDBJ);ORF_evidence=Q5QLW2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);TENOR=Os01t0518651-00
Chr01	irgsp1_rep	CDS	18405728	18408073	.	-	0	Parent=Os01t0518651-00
Chr01	irgsp1_rep	mRNA	18417660	18418723	.	+	.	ID=Os01t0518800-01;Name=Os01t0518800-01;Locus_id=Os01g0518800;Note=Conserved hypothetical protein.;Transcript_evidence=AK241314 (DDBJ%2C Best hit);ORF_evidence=NP_001172379.1 (RefSeq);NIAS_FLcDNA=J065141O08;TENOR=Os01t0518800-01;KEGG=Os01t0518800-01
Chr01	irgsp1_rep	five_prime_UTR	18417660	18417660	.	+	.	Parent=Os01t0518800-01
Chr01	irgsp1_rep	CDS	18417661	18418101	.	+	0	Parent=Os01t0518800-01
Chr01	irgsp1_rep	three_prime_UTR	18418102	18418723	.	+	.	Parent=Os01t0518800-01
Chr01	irgsp1_rep	mRNA	18435821	18437883	.	-	.	ID=Os01t0519050-01;Name=Os01t0519050-01;Locus_id=Os01g0519050;Note=Hypothetical gene.;Transcript_evidence=AK288275 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J090017F03;TENOR=Os01t0519050-01
Chr01	irgsp1_rep	five_prime_UTR	18436140	18437883	.	-	.	Parent=Os01t0519050-01
Chr01	irgsp1_rep	CDS	18435821	18436139	.	-	0	Parent=Os01t0519050-01
Chr01	irgsp1_rep	mRNA	18438339	18439607	.	-	.	ID=Os01t0519100-01;Name=Os01t0519100-01;Locus_id=Os01g0519100;Oryzabase Gene Symbol Synonym(s)=OsFbox013%2C OsFbox13%2C Os_F0590%2C OsFBX10;Oryzabase Gene Name Synonym(s)=F-box protein 13;Note=Kelch-type beta propeller domain containing protein.;Transcript_evidence=AK071677 (DDBJ%2C Best hit);ORF_evidence=NP_001150037.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Galactose oxidase/kelch%2C beta-propeller (IPR011043),Galactose oxidase%2C beta-propeller (IPR015916),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023107G19;Oryzabase=16816;Expression=AK071677;TENOR=Os01t0519100-01;KEGG=Os01t0519100-01
Chr01	irgsp1_rep	five_prime_UTR	18439580	18439607	.	-	.	Parent=Os01t0519100-01
Chr01	irgsp1_rep	CDS	18438569	18439579	.	-	0	Parent=Os01t0519100-01
Chr01	irgsp1_rep	three_prime_UTR	18438339	18438568	.	-	.	Parent=Os01t0519100-01
Chr01	irgsp1_rep	mRNA	18446993	18448858	.	+	.	ID=Os01t0519400-01;Name=Os01t0519400-01;Locus_id=Os01g0519400;Note=Conserved hypothetical protein.;Transcript_evidence=AK071142 (DDBJ%2C Best hit);ORF_evidence=B8A993 (UniProt);NIAS_FLcDNA=J023081C16;Expression=AK071142;TENOR=Os01t0519400-01;KEGG=Os01t0519400-01
Chr01	irgsp1_rep	five_prime_UTR	18446993	18447176	.	+	.	Parent=Os01t0519400-01
Chr01	irgsp1_rep	CDS	18447177	18447418	.	+	0	Parent=Os01t0519400-01
Chr01	irgsp1_rep	CDS	18447510	18447630	.	+	1	Parent=Os01t0519400-01
Chr01	irgsp1_rep	three_prime_UTR	18447631	18448858	.	+	.	Parent=Os01t0519400-01
Chr01	irgsp1_rep	mRNA	18460124	18460861	.	-	.	ID=Os01t0519700-00;Name=Os01t0519700-00;Locus_id=Os01g0519700;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C SWIM-type (IPR007527);TENOR=Os01t0519700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	18460124	18460861	.	-	0	Parent=Os01t0519700-00
Chr01	irgsp1_rep	mRNA	18503273	18503755	.	-	.	ID=Os01t0520180-00;Name=Os01t0520180-00;Locus_id=Os01g0520180;Note=Hypothetical conserved gene.;Transcript_evidence=CT834805 (DDBJ%2C Best hit);ORF_evidence=Q5QLW5 (UniProt);TENOR=Os01t0520180-00;KEGG=Os01t0520180-00
Chr01	irgsp1_rep	five_prime_UTR	18503622	18503755	.	-	.	Parent=Os01t0520180-00
Chr01	irgsp1_rep	CDS	18503298	18503621	.	-	0	Parent=Os01t0520180-00
Chr01	irgsp1_rep	three_prime_UTR	18503273	18503297	.	-	.	Parent=Os01t0520180-00
Chr01	irgsp1_rep	mRNA	18527781	18531782	.	-	.	ID=Os01t0520340-01;Name=Os01t0520340-01;Locus_id=Os01g0520340;Note=Hypothetical conserved gene.;Transcript_evidence=AK288478 (DDBJ%2C Best hit);ORF_evidence=Q5QLX0 (UniProt);NIAS_FLcDNA=J090038D21;TENOR=Os01t0520340-01;KEGG=Os01t0520340-01
Chr01	irgsp1_rep	five_prime_UTR	18530666	18531782	.	-	.	Parent=Os01t0520340-01
Chr01	irgsp1_rep	CDS	18530297	18530665	.	-	0	Parent=Os01t0520340-01
Chr01	irgsp1_rep	three_prime_UTR	18527781	18530296	.	-	.	Parent=Os01t0520340-01
Chr01	irgsp1_rep	mRNA	18530333	18531309	.	+	.	ID=Os01t0520500-01;Name=Os01t0520500-01;Locus_id=Os01g0520500;Note=Conserved hypothetical protein.;Transcript_evidence=AK242826 (DDBJ%2C Best hit);ORF_evidence=NP_001172382.1 (RefSeq);NIAS_FLcDNA=J090067D24;TENOR=Os01t0520500-01;KEGG=Os01t0520500-01
Chr01	irgsp1_rep	five_prime_UTR	18530333	18530423	.	+	.	Parent=Os01t0520500-01
Chr01	irgsp1_rep	CDS	18530424	18530610	.	+	0	Parent=Os01t0520500-01
Chr01	irgsp1_rep	CDS	18530898	18530992	.	+	2	Parent=Os01t0520500-01
Chr01	irgsp1_rep	three_prime_UTR	18530993	18531309	.	+	.	Parent=Os01t0520500-01
Chr01	irgsp1_rep	mRNA	18531902	18540738	.	-	.	ID=Os01t0520600-01;Name=Os01t0520600-01;Locus_id=Os01g0520600;Note=NB-ARC domain containing protein.;Transcript_evidence=AK102351 (DDBJ%2C Best hit);ORF_evidence=B9EX87 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J033091E05;Oryzabase=14952;Expression=AK102351;TENOR=Os01t0520600-01;KEGG=Os01t0520600-01
Chr01	irgsp1_rep	five_prime_UTR	18540678	18540738	.	-	.	Parent=Os01t0520600-01
Chr01	irgsp1_rep	five_prime_UTR	18540250	18540574	.	-	.	Parent=Os01t0520600-01
Chr01	irgsp1_rep	CDS	18539881	18540249	.	-	0	Parent=Os01t0520600-01
Chr01	irgsp1_rep	CDS	18537376	18539551	.	-	0	Parent=Os01t0520600-01
Chr01	irgsp1_rep	CDS	18537198	18537256	.	-	2	Parent=Os01t0520600-01
Chr01	irgsp1_rep	three_prime_UTR	18537146	18537197	.	-	.	Parent=Os01t0520600-01
Chr01	irgsp1_rep	three_prime_UTR	18532317	18532943	.	-	.	Parent=Os01t0520600-01
Chr01	irgsp1_rep	three_prime_UTR	18531902	18532244	.	-	.	Parent=Os01t0520600-01
Chr01	irgsp1_rep	mRNA	18555703	18556813	.	+	.	ID=Os01t0520800-01;Name=Os01t0520800-01;Locus_id=Os01g0520800;Note=Hypothetical protein.;Transcript_evidence=AK102454 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033094A13;Expression=AK102454;TENOR=Os01t0520800-01;KEGG=Os01t0520800-01
Chr01	irgsp1_rep	five_prime_UTR	18555703	18556076	.	+	.	Parent=Os01t0520800-01
Chr01	irgsp1_rep	CDS	18556077	18556406	.	+	0	Parent=Os01t0520800-01
Chr01	irgsp1_rep	CDS	18556545	18556625	.	+	0	Parent=Os01t0520800-01
Chr01	irgsp1_rep	three_prime_UTR	18556626	18556813	.	+	.	Parent=Os01t0520800-01
Chr01	irgsp1_rep	mRNA	18584847	18587837	.	+	.	ID=Os01t0521200-01;Name=Os01t0521200-01;Locus_id=Os01g0521200;Note=Similar to cDNA clone:J023118N19%2C full insert sequence.;Transcript_evidence=AK067952 (DDBJ%2C Best hit);ORF_evidence=B7EQV4 (UniProt);NIAS_FLcDNA=J013127E17;TENOR=Os01t0521200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	18584847	18585611	.	+	.	Parent=Os01t0521200-01
Chr01	irgsp1_rep	five_prime_UTR	18585729	18585922	.	+	.	Parent=Os01t0521200-01
Chr01	irgsp1_rep	CDS	18585923	18586090	.	+	0	Parent=Os01t0521200-01
Chr01	irgsp1_rep	three_prime_UTR	18586091	18586550	.	+	.	Parent=Os01t0521200-01
Chr01	irgsp1_rep	three_prime_UTR	18587307	18587397	.	+	.	Parent=Os01t0521200-01
Chr01	irgsp1_rep	three_prime_UTR	18587593	18587837	.	+	.	Parent=Os01t0521200-01
Chr01	irgsp1_rep	mRNA	18587725	18588823	.	-	.	ID=Os01t0521250-01;Name=Os01t0521250-01;Locus_id=Os01g0521250;Note=Non-protein coding transcript.;Transcript_evidence=AK242190 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J075163B02;TENOR=Os01t0521250-01
Chr01	irgsp1_rep	exon	18588537	18588823	.	-	.	Parent=Os01t0521250-01
Chr01	irgsp1_rep	exon	18587985	18588053	.	-	.	Parent=Os01t0521250-01
Chr01	irgsp1_rep	exon	18587725	18587833	.	-	.	Parent=Os01t0521250-01
Chr01	irgsp1_rep	mRNA	18593290	18597834	.	+	.	ID=Os01t0521400-01;Name=Os01t0521400-01;Locus_id=Os01g0521400;Note=Similar to lipase family protein.;Transcript_evidence=AK064554 (DDBJ%2C Best hit);ORF_evidence=XP_002887515.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629);InterPro=Partial AB-hydrolase lipase domain (IPR006693);NIAS_FLcDNA=002-112-C03;TENOR=Os01t0521400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	18593290	18593348	.	+	0	Parent=Os01t0521400-01
Chr01	irgsp1_rep	CDS	18593871	18593939	.	+	1	Parent=Os01t0521400-01
Chr01	irgsp1_rep	CDS	18594023	18594079	.	+	1	Parent=Os01t0521400-01
Chr01	irgsp1_rep	CDS	18596173	18596225	.	+	1	Parent=Os01t0521400-01
Chr01	irgsp1_rep	CDS	18596303	18596378	.	+	2	Parent=Os01t0521400-01
Chr01	irgsp1_rep	CDS	18596509	18597589	.	+	1	Parent=Os01t0521400-01
Chr01	irgsp1_rep	three_prime_UTR	18597590	18597834	.	+	.	Parent=Os01t0521400-01
Chr01	irgsp1_rep	mRNA	18601026	18611536	.	+	.	ID=Os01t0521500-01;Name=Os01t0521500-01;Locus_id=Os01g0521500;Oryzabase Gene Symbol Synonym(s)=OsDjC8;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C8;Note=Heat shock protein DnaJ family protein.;Transcript_evidence=AK100846 (DDBJ%2C Best hit);ORF_evidence=B8A9A3 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Protein of unknown function DUF3752 (IPR022226);NIAS_FLcDNA=J023123H02;Oryzabase=12165;Expression=AK100846;TENOR=Os01t0521500-01;KEGG=Os01t0521500-01
Chr01	irgsp1_rep	five_prime_UTR	18601026	18601084	.	+	.	Parent=Os01t0521500-01
Chr01	irgsp1_rep	CDS	18601085	18601534	.	+	0	Parent=Os01t0521500-01
Chr01	irgsp1_rep	CDS	18602238	18602572	.	+	0	Parent=Os01t0521500-01
Chr01	irgsp1_rep	CDS	18603964	18604038	.	+	1	Parent=Os01t0521500-01
Chr01	irgsp1_rep	CDS	18604216	18604318	.	+	1	Parent=Os01t0521500-01
Chr01	irgsp1_rep	CDS	18605445	18605533	.	+	0	Parent=Os01t0521500-01
Chr01	irgsp1_rep	CDS	18606844	18606955	.	+	1	Parent=Os01t0521500-01
Chr01	irgsp1_rep	CDS	18607984	18608037	.	+	0	Parent=Os01t0521500-01
Chr01	irgsp1_rep	CDS	18608162	18608210	.	+	0	Parent=Os01t0521500-01
Chr01	irgsp1_rep	CDS	18609340	18609440	.	+	2	Parent=Os01t0521500-01
Chr01	irgsp1_rep	CDS	18609555	18609670	.	+	0	Parent=Os01t0521500-01
Chr01	irgsp1_rep	CDS	18610891	18611218	.	+	1	Parent=Os01t0521500-01
Chr01	irgsp1_rep	three_prime_UTR	18611219	18611536	.	+	.	Parent=Os01t0521500-01
Chr01	irgsp1_rep	mRNA	18601082	18611292	.	-	.	ID=Os01t0521550-00;Name=Os01t0521550-00;Locus_id=Os01g0521550;Note=Hypothetical protein.;Transcript_evidence=tplb0029a21 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0521550-00
Chr01	irgsp1_rep	five_prime_UTR	18610891	18611292	.	-	.	Parent=Os01t0521550-00
Chr01	irgsp1_rep	five_prime_UTR	18609543	18609670	.	-	.	Parent=Os01t0521550-00
Chr01	irgsp1_rep	five_prime_UTR	18609338	18609429	.	-	.	Parent=Os01t0521550-00
Chr01	irgsp1_rep	five_prime_UTR	18607982	18608082	.	-	.	Parent=Os01t0521550-00
Chr01	irgsp1_rep	five_prime_UTR	18606842	18606953	.	-	.	Parent=Os01t0521550-00
Chr01	irgsp1_rep	five_prime_UTR	18605443	18605531	.	-	.	Parent=Os01t0521550-00
Chr01	irgsp1_rep	five_prime_UTR	18604215	18604316	.	-	.	Parent=Os01t0521550-00
Chr01	irgsp1_rep	five_prime_UTR	18603943	18604037	.	-	.	Parent=Os01t0521550-00
Chr01	irgsp1_rep	five_prime_UTR	18602299	18602547	.	-	.	Parent=Os01t0521550-00
Chr01	irgsp1_rep	CDS	18602235	18602298	.	-	0	Parent=Os01t0521550-00
Chr01	irgsp1_rep	CDS	18601082	18601531	.	-	2	Parent=Os01t0521550-00
Chr01	irgsp1_rep	mRNA	18613736	18616526	.	+	.	ID=Os01t0521600-00;Name=Os01t0521600-00;Locus_id=Os01g0521600;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=AK334605 (DDBJ);ORF_evidence=Q2QZP0 (UniProt);TENOR=Os01t0521600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	18613736	18613743	.	+	.	Parent=Os01t0521600-00
Chr01	irgsp1_rep	CDS	18613744	18614160	.	+	0	Parent=Os01t0521600-00
Chr01	irgsp1_rep	three_prime_UTR	18614161	18616526	.	+	.	Parent=Os01t0521600-00
Chr01	irgsp1_rep	mRNA	18626121	18627135	.	+	.	ID=Os01t0522100-01;Name=Os01t0522100-01;Locus_id=Os01g0522100;Note=Conserved hypothetical protein.;Transcript_evidence=AK058902 (DDBJ%2C Best hit);ORF_evidence=B8A9A5 (UniProt);NIAS_FLcDNA=001-008-B03;Expression=AK058902;TENOR=Os01t0522100-01;KEGG=Os01t0522100-01
Chr01	irgsp1_rep	five_prime_UTR	18626121	18626171	.	+	.	Parent=Os01t0522100-01
Chr01	irgsp1_rep	CDS	18626172	18626489	.	+	0	Parent=Os01t0522100-01
Chr01	irgsp1_rep	three_prime_UTR	18626490	18627135	.	+	.	Parent=Os01t0522100-01
Chr01	irgsp1_rep	mRNA	18639233	18641762	.	+	.	ID=Os01t0522400-00;Name=Os01t0522400-00;Locus_id=Os01g0522400;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8A9A5 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);TENOR=Os01t0522400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	18639233	18640843	.	+	0	Parent=Os01t0522400-00
Chr01	irgsp1_rep	CDS	18641153	18641224	.	+	0	Parent=Os01t0522400-00
Chr01	irgsp1_rep	CDS	18641339	18641537	.	+	0	Parent=Os01t0522400-00
Chr01	irgsp1_rep	CDS	18641581	18641762	.	+	2	Parent=Os01t0522400-00
Chr01	irgsp1_rep	mRNA	18659094	18662684	.	+	.	ID=Os01t0522800-00;Name=Os01t0522800-00;Locus_id=Os01g0522800;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001043216.2 (RefSeq);TENOR=Os01t0522800-00
Chr01	irgsp1_rep	CDS	18659094	18659284	.	+	0	Parent=Os01t0522800-00
Chr01	irgsp1_rep	CDS	18661709	18662684	.	+	1	Parent=Os01t0522800-00
Chr01	irgsp1_rep	mRNA	18663624	18665275	.	+	.	ID=Os01t0522950-00;Name=Os01t0522950-00;Locus_id=Os01g0522950;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7EZN9 (UniProt);TENOR=Os01t0522950-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	18663624	18664094	.	+	0	Parent=Os01t0522950-00
Chr01	irgsp1_rep	CDS	18664283	18664351	.	+	0	Parent=Os01t0522950-00
Chr01	irgsp1_rep	CDS	18664838	18665275	.	+	0	Parent=Os01t0522950-00
Chr01	irgsp1_rep	mRNA	18668266	18669004	.	+	.	ID=Os01t0523000-01;Name=Os01t0523000-01;Locus_id=Os01g0523000;Note=Hypothetical gene.;Transcript_evidence=AK105213 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-109-F05;Expression=AK105213;TENOR=Os01t0523000-01;KEGG=Os01t0523000-01
Chr01	irgsp1_rep	five_prime_UTR	18668266	18668267	.	+	.	Parent=Os01t0523000-01
Chr01	irgsp1_rep	CDS	18668268	18668714	.	+	0	Parent=Os01t0523000-01
Chr01	irgsp1_rep	three_prime_UTR	18668715	18669004	.	+	.	Parent=Os01t0523000-01
Chr01	irgsp1_rep	mRNA	18671229	18674473	.	+	.	ID=Os01t0523100-00;Name=Os01t0523100-00;Locus_id=Os01g0523100;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=EU423905 (DDBJ);ORF_evidence=Q7EZN6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os01t0523100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	18671229	18674001	.	+	0	Parent=Os01t0523100-00
Chr01	irgsp1_rep	CDS	18674124	18674473	.	+	2	Parent=Os01t0523100-00
Chr01	irgsp1_rep	mRNA	18671367	18674451	.	-	.	ID=Os01t0523250-00;Name=Os01t0523250-00;Locus_id=Os01g0523250;Note=Hypothetical protein.;Transcript_evidence=tplb0062g20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0523250-00
Chr01	irgsp1_rep	five_prime_UTR	18674027	18674451	.	-	.	Parent=Os01t0523250-00
Chr01	irgsp1_rep	five_prime_UTR	18672554	18673901	.	-	.	Parent=Os01t0523250-00
Chr01	irgsp1_rep	CDS	18672281	18672553	.	-	0	Parent=Os01t0523250-00
Chr01	irgsp1_rep	three_prime_UTR	18671367	18672280	.	-	.	Parent=Os01t0523250-00
Chr01	irgsp1_rep	mRNA	18687833	18688211	.	+	.	ID=Os01t0523401-00;Name=Os01t0523401-00;Locus_id=Os01g0523401;Note=Similar to ribosomal protein S18.;Transcript_evidence=X82510 (DDBJ);ORF_evidence=YP_654229.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S18 (IPR001648);TENOR=Os01t0523401-00;KEGG=Os01t0523401-00
Chr01	irgsp1_rep	CDS	18687833	18688198	.	+	0	Parent=Os01t0523401-00
Chr01	irgsp1_rep	three_prime_UTR	18688199	18688211	.	+	.	Parent=Os01t0523401-00
Chr01	irgsp1_rep	mRNA	18703975	18705050	.	-	.	ID=Os01t0523600-00;Name=Os01t0523600-00;Locus_id=Os01g0523600;Note=Hypothetical protein.;Transcript_evidence=BT019283 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0523600-00
Chr01	irgsp1_rep	five_prime_UTR	18704966	18705050	.	-	.	Parent=Os01t0523600-00
Chr01	irgsp1_rep	CDS	18704707	18704965	.	-	0	Parent=Os01t0523600-00
Chr01	irgsp1_rep	CDS	18704545	18704612	.	-	2	Parent=Os01t0523600-00
Chr01	irgsp1_rep	three_prime_UTR	18704513	18704544	.	-	.	Parent=Os01t0523600-00
Chr01	irgsp1_rep	three_prime_UTR	18704156	18704416	.	-	.	Parent=Os01t0523600-00
Chr01	irgsp1_rep	three_prime_UTR	18703975	18704069	.	-	.	Parent=Os01t0523600-00
Chr01	irgsp1_rep	mRNA	18704760	18706173	.	+	.	ID=Os01t0523800-00;Name=Os01t0523800-00;Locus_id=Os01g0523800;Note=Hypothetical conserved gene.;Transcript_evidence=BT067949 (DDBJ);ORF_evidence=NP_001174074.1 (RefSeq);TENOR=Os01t0523800-00;KEGG=Os01t0523800-00
Chr01	irgsp1_rep	five_prime_UTR	18704760	18704867	.	+	.	Parent=Os01t0523800-00
Chr01	irgsp1_rep	CDS	18704868	18705098	.	+	0	Parent=Os01t0523800-00
Chr01	irgsp1_rep	CDS	18705388	18706173	.	+	0	Parent=Os01t0523800-00
Chr01	irgsp1_rep	mRNA	18720879	18723104	.	+	.	ID=Os01t0524100-01;Name=Os01t0524100-01;Locus_id=Os01g0524100;RAP-DB Gene Symbol Synonym(s)=ESA1;RAP-DB Gene Name Synonym(s)=EMBRYO SAC ABORTION 1;CGSNL Gene Symbol=ESA1;CGSNL Gene Name=EMBRYO SAC ABORTION 1;Oryzabase Gene Symbol Synonym(s)=OsESA1;Note=Nuclear-membrane localized armadillo (ARM) repeat protein%2C Female sterility in interspecific hybrid progeny;Transcript_evidence=ab initio prediction;ORF_evidence=A0A0P0V3G5;InterPro=Armadillo-type fold (IPR016024);Manual Curation=May 8%2C 2019;Literature_PMID=30770460;Oryzabase=23133;TENOR=Os01t0524100-00;Subcellular location=nucleolus (GO:0005730), cell membrane (GO:0005886)
Chr01	irgsp1_rep	CDS	18720879	18722420	.	+	0	Parent=Os01t0524100-01
Chr01	irgsp1_rep	CDS	18722513	18722584	.	+	0	Parent=Os01t0524100-01
Chr01	irgsp1_rep	CDS	18722691	18723104	.	+	0	Parent=Os01t0524100-01
Chr01	irgsp1_rep	mRNA	18720539	18721863	.	-	.	ID=Os01t0524251-01;Name=Os01t0524251-01;Locus_id=Os01g0524251;Note=Conserved hypothetical protein.;Transcript_evidence=AK064098 (DDBJ%2C Best hit);ORF_evidence=B8A9B0 (UniProt);NIAS_FLcDNA=002-100-G06;Expression=AK064098;TENOR=Os01t0524251-01;KEGG=Os01t0524251-01
Chr01	irgsp1_rep	five_prime_UTR	18721850	18721863	.	-	.	Parent=Os01t0524251-01
Chr01	irgsp1_rep	CDS	18721319	18721849	.	-	0	Parent=Os01t0524251-01
Chr01	irgsp1_rep	three_prime_UTR	18720539	18721318	.	-	.	Parent=Os01t0524251-01
Chr01	irgsp1_rep	mRNA	18749285	18750480	.	+	.	ID=Os01t0524400-01;Name=Os01t0524400-01;Locus_id=Os01g0524400;Note=Conserved hypothetical protein.;Transcript_evidence=AK111464 (DDBJ%2C Best hit);ORF_evidence=Q8LH61 (UniProt);NIAS_FLcDNA=002-183-D04;TENOR=Os01t0524400-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	18749285	18749512	.	+	.	Parent=Os01t0524400-01
Chr01	irgsp1_rep	CDS	18749513	18750091	.	+	0	Parent=Os01t0524400-01
Chr01	irgsp1_rep	three_prime_UTR	18750092	18750480	.	+	.	Parent=Os01t0524400-01
Chr01	irgsp1_rep	mRNA	18755303	18756817	.	+	.	ID=Os01t0524500-01;Name=Os01t0524500-01;Locus_id=Os01g0524500;CGSNL Gene Symbol=MYBS1;CGSNL Gene Name=TRANSCRIPTION FACTOR MYBS1;Oryzabase Gene Symbol Synonym(s)=OsMYBS1%2C Os-MYBS1%2C Mybs1;Oryzabase Gene Name Synonym(s)=transcription factor MYBS1;Note=Conserved hypothetical protein.;Transcript_evidence=AK068565 (DDBJ%2C Best hit);ORF_evidence=C0PI55 (UniProt);NIAS_FLcDNA=J013154G12;Oryzabase=9975;TENOR=Os01t0524500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	18755303	18755484	.	+	.	Parent=Os01t0524500-01
Chr01	irgsp1_rep	five_prime_UTR	18755551	18755829	.	+	.	Parent=Os01t0524500-01
Chr01	irgsp1_rep	CDS	18755830	18755850	.	+	0	Parent=Os01t0524500-01
Chr01	irgsp1_rep	CDS	18755972	18756463	.	+	0	Parent=Os01t0524500-01
Chr01	irgsp1_rep	three_prime_UTR	18756464	18756817	.	+	.	Parent=Os01t0524500-01
Chr01	irgsp1_rep	mRNA	18755383	18756817	.	+	.	ID=Os01t0524500-02;Name=Os01t0524500-02;Locus_id=Os01g0524500;RAP-DB Gene Symbol Synonym(s)=OsMYBS1%2C MYBS1%2C Os-MYBS1;RAP-DB Gene Name Synonym(s)=transcription factor MYBS1;CGSNL Gene Symbol=MYBS1;CGSNL Gene Name=TRANSCRIPTION FACTOR MYBS1;Oryzabase Gene Symbol Synonym(s)=OsMYBS1%2C Os-MYBS1%2C Mybs1;Oryzabase Gene Name Synonym(s)=transcription factor MYBS1;Note=Transcription factor%2C Regulation of nutrient mobilization in germination;Transcript_evidence=AY151042 (Tainung 67);ORF_evidence=Q8LH59;GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: Chromatin binding (GO:0003682);InterPro=Homeodomain-like (IPR009057),SANT/Myb domain (IPR001005),Myb-like domain (IPR017877),Myb domain (IPR017930),Myb domain%2C plants (IPR006447);Manual Curation=June 25%2C 2014;Literature_PMID=22773748,12172034;Oryzabase=9975
Chr01	irgsp1_rep	five_prime_UTR	18755383	18755401	.	+	.	Parent=Os01t0524500-02
Chr01	irgsp1_rep	CDS	18755402	18755850	.	+	0	Parent=Os01t0524500-02
Chr01	irgsp1_rep	CDS	18755972	18756443	.	+	1	Parent=Os01t0524500-02
Chr01	irgsp1_rep	three_prime_UTR	18756444	18756817	.	+	.	Parent=Os01t0524500-02
Chr01	irgsp1_rep	mRNA	18763270	18774476	.	+	.	ID=Os01t0524700-01;Name=Os01t0524700-01;Locus_id=Os01g0524700;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK105413 (DDBJ%2C Best hit);ORF_evidence=B9EXA2 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515),Molecular Function: protein binding involved in protein folding (GO:0044183);InterPro=Armadillo (IPR000225),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),26S proteasome non-ATPase regulatory subunit 5 (IPR019538);NIAS_FLcDNA=001-123-H08;Expression=AK105413;TENOR=Os01t0524700-01;KEGG=Os01t0524700-01
Chr01	irgsp1_rep	five_prime_UTR	18763270	18763331	.	+	.	Parent=Os01t0524700-01
Chr01	irgsp1_rep	CDS	18763332	18763553	.	+	0	Parent=Os01t0524700-01
Chr01	irgsp1_rep	CDS	18764160	18764507	.	+	0	Parent=Os01t0524700-01
Chr01	irgsp1_rep	CDS	18764691	18764906	.	+	0	Parent=Os01t0524700-01
Chr01	irgsp1_rep	CDS	18767450	18768099	.	+	0	Parent=Os01t0524700-01
Chr01	irgsp1_rep	CDS	18768883	18768979	.	+	1	Parent=Os01t0524700-01
Chr01	irgsp1_rep	CDS	18769060	18769113	.	+	0	Parent=Os01t0524700-01
Chr01	irgsp1_rep	CDS	18769195	18769325	.	+	0	Parent=Os01t0524700-01
Chr01	irgsp1_rep	CDS	18770708	18770898	.	+	1	Parent=Os01t0524700-01
Chr01	irgsp1_rep	CDS	18771827	18772464	.	+	2	Parent=Os01t0524700-01
Chr01	irgsp1_rep	three_prime_UTR	18772465	18772531	.	+	.	Parent=Os01t0524700-01
Chr01	irgsp1_rep	three_prime_UTR	18773612	18774476	.	+	.	Parent=Os01t0524700-01
Chr01	irgsp1_rep	mRNA	18780600	18781392	.	+	.	ID=Os01t0525100-01;Name=Os01t0525100-01;Locus_id=Os01g0525100;Note=Conserved hypothetical protein.;Transcript_evidence=AK064104 (DDBJ%2C Best hit);ORF_evidence=B8A9B5 (UniProt);NIAS_FLcDNA=002-101-D03;Expression=AK064104;TENOR=Os01t0525100-01;KEGG=Os01t0525100-01
Chr01	irgsp1_rep	five_prime_UTR	18780600	18780739	.	+	.	Parent=Os01t0525100-01
Chr01	irgsp1_rep	CDS	18780740	18781120	.	+	0	Parent=Os01t0525100-01
Chr01	irgsp1_rep	three_prime_UTR	18781121	18781392	.	+	.	Parent=Os01t0525100-01
Chr01	irgsp1_rep	mRNA	18818271	18819071	.	+	.	ID=Os01t0525350-00;Name=Os01t0525350-00;Locus_id=Os01g0525350;Note=Similar to RTFL15 (ROTUNDIFOLIA LIKE 15).;Transcript_evidence=CT834881 (DDBJ%2C Best hit);ORF_evidence=NP_001077795.1 (RefSeq);InterPro=DVL (IPR012552);TENOR=Os01t0525350-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	18818271	18818572	.	+	.	Parent=Os01t0525350-00
Chr01	irgsp1_rep	CDS	18818573	18818692	.	+	0	Parent=Os01t0525350-00
Chr01	irgsp1_rep	three_prime_UTR	18818693	18819071	.	+	.	Parent=Os01t0525350-00
Chr01	irgsp1_rep	mRNA	18823738	18834467	.	+	.	ID=Os01t0525500-01;Name=Os01t0525500-01;Locus_id=Os01g0525500;Note=Non-protein coding transcript.;Transcript_evidence=AK073798 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J033066F03;TENOR=Os01t0525500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	exon	18823738	18823808	.	+	.	Parent=Os01t0525500-01
Chr01	irgsp1_rep	exon	18824061	18824169	.	+	.	Parent=Os01t0525500-01
Chr01	irgsp1_rep	exon	18825686	18825852	.	+	.	Parent=Os01t0525500-01
Chr01	irgsp1_rep	exon	18833883	18834467	.	+	.	Parent=Os01t0525500-01
Chr01	irgsp1_rep	mRNA	18833287	18833812	.	+	.	ID=Os01t0525700-01;Name=Os01t0525700-01;Locus_id=Os01g0525700;Note=Similar to DVL4/RTFL17 (ROTUNDIFOLIA LIKE 17).;Transcript_evidence=AK062691 (DDBJ%2C Best hit);ORF_evidence=NP_683303.1 (RefSeq);InterPro=DVL (IPR012552);NIAS_FLcDNA=001-106-A03;Expression=AK062691;TENOR=Os01t0525700-01;KEGG=Os01t0525700-01
Chr01	irgsp1_rep	five_prime_UTR	18833287	18833378	.	+	.	Parent=Os01t0525700-01
Chr01	irgsp1_rep	CDS	18833379	18833504	.	+	0	Parent=Os01t0525700-01
Chr01	irgsp1_rep	three_prime_UTR	18833505	18833812	.	+	.	Parent=Os01t0525700-01
Chr01	irgsp1_rep	mRNA	18835667	18836039	.	+	.	ID=Os01t0525701-01;Name=Os01t0525701-01;Locus_id=Os01g0525701;Note=Similar to DVL4/RTFL17 (ROTUNDIFOLIA LIKE 17).;Transcript_evidence=AK241235 (DDBJ%2C Best hit);ORF_evidence=NP_683303.1 (RefSeq);InterPro=DVL (IPR012552);NIAS_FLcDNA=J065128E12;TENOR=Os01t0525701-01;KEGG=Os01t0525701-01
Chr01	irgsp1_rep	five_prime_UTR	18835667	18835777	.	+	.	Parent=Os01t0525701-01
Chr01	irgsp1_rep	CDS	18835778	18835894	.	+	0	Parent=Os01t0525701-01
Chr01	irgsp1_rep	three_prime_UTR	18835895	18836039	.	+	.	Parent=Os01t0525701-01
Chr01	irgsp1_rep	mRNA	18839056	18839612	.	+	.	ID=Os01t0525800-01;Name=Os01t0525800-01;Locus_id=Os01g0525800;Note=Similar to DVL5.;Transcript_evidence=AK073683 (DDBJ%2C Best hit),AK099363 (DDBJ%2C Best hit);ORF_evidence=NP_001175756.1 (RefSeq);InterPro=DVL (IPR012552);NIAS_FLcDNA=J033057A01,J033047K13;TENOR=Os01t0525800-01
Chr01	irgsp1_rep	five_prime_UTR	18839056	18839150	.	+	.	Parent=Os01t0525800-01
Chr01	irgsp1_rep	CDS	18839151	18839276	.	+	0	Parent=Os01t0525800-01
Chr01	irgsp1_rep	three_prime_UTR	18839277	18839612	.	+	.	Parent=Os01t0525800-01
Chr01	irgsp1_rep	mRNA	18847970	18851815	.	+	.	ID=Os01t0526100-01;Name=Os01t0526100-01;Locus_id=Os01g0526100;Note=Similar to splicing factor 45.;Transcript_evidence=AK243331 (DDBJ%2C Best hit);ORF_evidence=B6TI71 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=D111/G-patch (IPR000467),RNA recognition motif domain (IPR000504),RNA recognition motif domain%2C eukaryote (IPR003954),Nucleotide-binding%2C alpha-beta plait (IPR012677),Splicing factor%2C SPF45 (IPR016967);NIAS_FLcDNA=J100058K04;TENOR=Os01t0526100-01;KEGG=Os01t0526100-01
Chr01	irgsp1_rep	five_prime_UTR	18847970	18848142	.	+	.	Parent=Os01t0526100-01
Chr01	irgsp1_rep	five_prime_UTR	18848249	18848264	.	+	.	Parent=Os01t0526100-01
Chr01	irgsp1_rep	CDS	18848265	18849074	.	+	0	Parent=Os01t0526100-01
Chr01	irgsp1_rep	CDS	18851284	18851580	.	+	0	Parent=Os01t0526100-01
Chr01	irgsp1_rep	three_prime_UTR	18851581	18851815	.	+	.	Parent=Os01t0526100-01
Chr01	irgsp1_rep	mRNA	18853609	18857307	.	+	.	ID=Os01t0526200-01;Name=Os01t0526200-01;Locus_id=Os01g0526200;Note=TRAUB family protein.;Transcript_evidence=AK063442 (DDBJ%2C Best hit);ORF_evidence=NP_001150275.1 (RefSeq);GO=Cellular Component: nucleus (GO:0005634);InterPro=TRAUB (IPR012617);NIAS_FLcDNA=001-115-F02;Expression=AK063442;TENOR=Os01t0526200-01;KEGG=Os01t0526200-01
Chr01	irgsp1_rep	five_prime_UTR	18853609	18853680	.	+	.	Parent=Os01t0526200-01
Chr01	irgsp1_rep	CDS	18853681	18853863	.	+	0	Parent=Os01t0526200-01
Chr01	irgsp1_rep	CDS	18853971	18854140	.	+	0	Parent=Os01t0526200-01
Chr01	irgsp1_rep	CDS	18854231	18854303	.	+	1	Parent=Os01t0526200-01
Chr01	irgsp1_rep	CDS	18854419	18854493	.	+	0	Parent=Os01t0526200-01
Chr01	irgsp1_rep	CDS	18854619	18854729	.	+	0	Parent=Os01t0526200-01
Chr01	irgsp1_rep	CDS	18854837	18854882	.	+	0	Parent=Os01t0526200-01
Chr01	irgsp1_rep	CDS	18854975	18855038	.	+	2	Parent=Os01t0526200-01
Chr01	irgsp1_rep	CDS	18855700	18855802	.	+	1	Parent=Os01t0526200-01
Chr01	irgsp1_rep	CDS	18855889	18855984	.	+	0	Parent=Os01t0526200-01
Chr01	irgsp1_rep	CDS	18856076	18856105	.	+	0	Parent=Os01t0526200-01
Chr01	irgsp1_rep	CDS	18856324	18856423	.	+	0	Parent=Os01t0526200-01
Chr01	irgsp1_rep	CDS	18856651	18856735	.	+	2	Parent=Os01t0526200-01
Chr01	irgsp1_rep	CDS	18856855	18856978	.	+	1	Parent=Os01t0526200-01
Chr01	irgsp1_rep	three_prime_UTR	18856979	18857307	.	+	.	Parent=Os01t0526200-01
Chr01	irgsp1_rep	mRNA	18923609	18939279	.	+	.	ID=Os01t0527400-01;Name=Os01t0527400-01;Locus_id=Os01g0527400;Note=Transcription elongation factor S-II%2C central region domain containing protein.;Transcript_evidence=AK103167 (DDBJ%2C Best hit);ORF_evidence=D8L9V4 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: DNA binding (GO:0003677);InterPro=Bromo adjacent homology (BAH) domain (IPR001025),Transcription elongation factor S-II%2C central domain (IPR003618);NIAS_FLcDNA=J033121F02;Expression=AK103167;TENOR=Os01t0527400-01;KEGG=Os01t0527400-01
Chr01	irgsp1_rep	five_prime_UTR	18923609	18923648	.	+	.	Parent=Os01t0527400-01
Chr01	irgsp1_rep	CDS	18923649	18924155	.	+	0	Parent=Os01t0527400-01
Chr01	irgsp1_rep	CDS	18924271	18924333	.	+	0	Parent=Os01t0527400-01
Chr01	irgsp1_rep	CDS	18924950	18925651	.	+	0	Parent=Os01t0527400-01
Chr01	irgsp1_rep	CDS	18926824	18926958	.	+	0	Parent=Os01t0527400-01
Chr01	irgsp1_rep	CDS	18927281	18927364	.	+	0	Parent=Os01t0527400-01
Chr01	irgsp1_rep	CDS	18927985	18928041	.	+	0	Parent=Os01t0527400-01
Chr01	irgsp1_rep	CDS	18928180	18928266	.	+	0	Parent=Os01t0527400-01
Chr01	irgsp1_rep	CDS	18938539	18938838	.	+	0	Parent=Os01t0527400-01
Chr01	irgsp1_rep	three_prime_UTR	18938839	18939279	.	+	.	Parent=Os01t0527400-01
Chr01	irgsp1_rep	mRNA	18940502	18945666	.	-	.	ID=Os01t0527600-01;Name=Os01t0527600-01;Locus_id=Os01g0527600;RAP-DB Gene Symbol Synonym(s)=SHL2%2C shl2%2C SHL2%2C sh2%2C OsRDR6;RAP-DB Gene Name Synonym(s)=SHOOTLESS 2%2C shootless 2%2C shootless-2%2C Probable RNA-dependent RNA polymerase SHL2%2C Protein SHOOTLESS 2%2C SHOOTLESS2%2C RNA-dependent RNA polymerase 6%2C rod-like lemma;CGSNL Gene Symbol=SHL2;CGSNL Gene Name=SHOOTLESS 2;Oryzabase Gene Symbol Synonym(s)=shl2%2C SHL2%2C sh2%2C OsRDR6%2C RDR6;Oryzabase Gene Name Synonym(s)=shootless 2%2C shootless-2%2C Probable RNA-dependent RNA polymerase SHL2%2C Protein SHOOTLESS 2%2C SHOOTLESS2%2C RNA-dependent RNA polymerase 6%2C rod-like lemma;Note=RNA-dependent RNA polymerase%2C Small RNA biogenesis%2C Regulation of shoot apical meristem (SAM) initiation%2C Spikelet development;Transcript_evidence=AB353923;ORF_evidence=Q8LHH9;GO=Molecular Function: RNA-directed RNA polymerase activity (GO:0003968);InterPro=RNA-dependent RNA polymerase%2C eukaryotic-type (IPR007855);Manual Curation=March 9%2C 2015;Literature_PMID=17804793,22443269;Oryzabase=976;TENOR=Os01t0527600-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	18945532	18945666	.	-	.	Parent=Os01t0527600-01
Chr01	irgsp1_rep	CDS	18942745	18945531	.	-	0	Parent=Os01t0527600-01
Chr01	irgsp1_rep	CDS	18940642	18941511	.	-	0	Parent=Os01t0527600-01
Chr01	irgsp1_rep	three_prime_UTR	18940502	18940641	.	-	.	Parent=Os01t0527600-01
Chr01	irgsp1_rep	mRNA	18961353	18969005	.	-	.	ID=Os01t0527700-01;Name=Os01t0527700-01;Locus_id=Os01g0527700;Note=Protohaem IX farnesyltransferase%2C mitochondria domain containing protein.;Transcript_evidence=AK061861 (DDBJ%2C Best hit);ORF_evidence=B6TRR8 (UniProt);GO=Biological Process: heme biosynthetic process (GO:0006783),Biological Process: heme O biosynthetic process (GO:0048034),Cellular Component: integral to membrane (GO:0016021),Cellular Component: mitochondrial membrane (GO:0031966),Molecular Function: prenyltransferase activity (GO:0004659),Molecular Function: protoheme IX farnesyltransferase activity (GO:0008495);InterPro=UbiA prenyltransferase family (IPR000537),Protohaem IX farnesyltransferase (IPR006369),Protohaem IX farnesyltransferase%2C mitochondria (IPR016315);NIAS_FLcDNA=001-040-G11;TENOR=Os01t0527700-01
Chr01	irgsp1_rep	five_prime_UTR	18968915	18969005	.	-	.	Parent=Os01t0527700-01
Chr01	irgsp1_rep	CDS	18968631	18968914	.	-	0	Parent=Os01t0527700-01
Chr01	irgsp1_rep	CDS	18964725	18964854	.	-	1	Parent=Os01t0527700-01
Chr01	irgsp1_rep	CDS	18963647	18963784	.	-	0	Parent=Os01t0527700-01
Chr01	irgsp1_rep	CDS	18963385	18963518	.	-	0	Parent=Os01t0527700-01
Chr01	irgsp1_rep	CDS	18962248	18962373	.	-	1	Parent=Os01t0527700-01
Chr01	irgsp1_rep	CDS	18962029	18962132	.	-	1	Parent=Os01t0527700-01
Chr01	irgsp1_rep	CDS	18961566	18961957	.	-	2	Parent=Os01t0527700-01
Chr01	irgsp1_rep	three_prime_UTR	18961353	18961565	.	-	.	Parent=Os01t0527700-01
Chr01	irgsp1_rep	mRNA	18961355	18968964	.	-	.	ID=Os01t0527700-02;Name=Os01t0527700-02;Locus_id=Os01g0527700;Note=Protohaem IX farnesyltransferase%2C mitochondria domain containing protein.;Transcript_evidence=AK099005 (DDBJ%2C Best hit);ORF_evidence=B6TRR8 (UniProt);GO=Biological Process: heme biosynthetic process (GO:0006783),Biological Process: heme O biosynthetic process (GO:0048034),Cellular Component: integral to membrane (GO:0016021),Cellular Component: mitochondrial membrane (GO:0031966),Molecular Function: prenyltransferase activity (GO:0004659),Molecular Function: protoheme IX farnesyltransferase activity (GO:0008495);InterPro=UbiA prenyltransferase family (IPR000537),Protohaem IX farnesyltransferase (IPR006369),Protohaem IX farnesyltransferase%2C mitochondria (IPR016315);NIAS_FLcDNA=J013109B04;TENOR=Os01t0527700-02
Chr01	irgsp1_rep	five_prime_UTR	18968915	18968964	.	-	.	Parent=Os01t0527700-02
Chr01	irgsp1_rep	CDS	18968631	18968914	.	-	0	Parent=Os01t0527700-02
Chr01	irgsp1_rep	CDS	18964725	18964854	.	-	1	Parent=Os01t0527700-02
Chr01	irgsp1_rep	CDS	18963647	18963784	.	-	0	Parent=Os01t0527700-02
Chr01	irgsp1_rep	CDS	18963385	18963518	.	-	0	Parent=Os01t0527700-02
Chr01	irgsp1_rep	CDS	18962248	18962373	.	-	1	Parent=Os01t0527700-02
Chr01	irgsp1_rep	CDS	18962029	18962132	.	-	1	Parent=Os01t0527700-02
Chr01	irgsp1_rep	CDS	18961566	18961957	.	-	2	Parent=Os01t0527700-02
Chr01	irgsp1_rep	three_prime_UTR	18961355	18961565	.	-	.	Parent=Os01t0527700-02
Chr01	irgsp1_rep	mRNA	18968590	18968931	.	+	.	ID=Os01t0527801-00;Name=Os01t0527801-00;Locus_id=Os01g0527801;Note=Non-protein coding transcript.;Transcript_evidence=EU948972 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0527801-00
Chr01	irgsp1_rep	exon	18968590	18968931	.	+	.	Parent=Os01t0527801-00
Chr01	irgsp1_rep	mRNA	18972507	18977135	.	-	.	ID=Os01t0527900-00;Name=Os01t0527900-00;Locus_id=Os01g0527900;CGSNL Gene Symbol=MSL03;CGSNL Gene Name=MYB/SANT-LIKE 3;Oryzabase Gene Symbol Synonym(s)=OsMSL03%2C MSL3;Oryzabase Gene Name Synonym(s)=Myb/SANT-LIKE 3;Note=Hypothetical conserved gene.;Transcript_evidence=AK119927 (DDBJ%2C Secondary hit);ORF_evidence=Q8S0Y0 (UniProt);Oryzabase=22946;Expression=AK119927;TENOR=Os01t0527900-00;KEGG=Os01t0527900-00
Chr01	irgsp1_rep	five_prime_UTR	18976932	18977135	.	-	.	Parent=Os01t0527900-00
Chr01	irgsp1_rep	CDS	18976681	18976931	.	-	0	Parent=Os01t0527900-00
Chr01	irgsp1_rep	CDS	18975850	18976087	.	-	1	Parent=Os01t0527900-00
Chr01	irgsp1_rep	CDS	18974965	18975753	.	-	0	Parent=Os01t0527900-00
Chr01	irgsp1_rep	three_prime_UTR	18974958	18974964	.	-	.	Parent=Os01t0527900-00
Chr01	irgsp1_rep	three_prime_UTR	18972943	18972999	.	-	.	Parent=Os01t0527900-00
Chr01	irgsp1_rep	three_prime_UTR	18972507	18972745	.	-	.	Parent=Os01t0527900-00
Chr01	irgsp1_rep	mRNA	18977424	18978319	.	+	.	ID=Os01t0528000-01;Name=Os01t0528000-01;Locus_id=Os01g0528000;CGSNL Gene Symbol=TFC1;CGSNL Gene Name=TRANSCRIPTION FACTOR CLASS C1;Oryzabase Gene Symbol Synonym(s)=OsTFC1;Oryzabase Gene Name Synonym(s)=transcription factor class C1;Note=Transcription factor IIIC%2C subunit 5 domain containing protein.;Transcript_evidence=AK119796 (DDBJ%2C Best hit);ORF_evidence=B8A9C8 (UniProt);InterPro=Transcription factor IIIC%2C subunit 5 (IPR019136);NIAS_FLcDNA=002-175-D06;Oryzabase=23097;Expression=AK119796;TENOR=Os01t0528000-01;KEGG=Os01t0528000-01
Chr01	irgsp1_rep	five_prime_UTR	18977424	18977684	.	+	.	Parent=Os01t0528000-01
Chr01	irgsp1_rep	CDS	18977685	18977882	.	+	0	Parent=Os01t0528000-01
Chr01	irgsp1_rep	CDS	18977977	18978225	.	+	0	Parent=Os01t0528000-01
Chr01	irgsp1_rep	three_prime_UTR	18978226	18978319	.	+	.	Parent=Os01t0528000-01
Chr01	irgsp1_rep	mRNA	18992785	18994974	.	+	.	ID=Os01t0528300-01;Name=Os01t0528300-01;Locus_id=Os01g0528300;Note=Similar to OSIGBa0142C11.3 protein.;Transcript_evidence=AK062349 (DDBJ%2C Best hit);ORF_evidence=Q01L56 (UniProt);NIAS_FLcDNA=001-101-F12;TENOR=Os01t0528300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	18992785	18992929	.	+	.	Parent=Os01t0528300-01
Chr01	irgsp1_rep	CDS	18992930	18993358	.	+	0	Parent=Os01t0528300-01
Chr01	irgsp1_rep	three_prime_UTR	18993359	18993402	.	+	.	Parent=Os01t0528300-01
Chr01	irgsp1_rep	three_prime_UTR	18994578	18994974	.	+	.	Parent=Os01t0528300-01
Chr01	irgsp1_rep	mRNA	19009708	19014136	.	+	.	ID=Os01t0528800-01;Name=Os01t0528800-01;Locus_id=Os01g0528800;Oryzabase Gene Symbol Synonym(s)=CADL;Oryzabase Gene Name Synonym(s)=cinnamyl alcohol dehydrogenase-like;Note=Similar to Cinnamyl alcohol dehydrogenase.;Transcript_evidence=AK059305 (DDBJ%2C Best hit),AK068824 (DDBJ%2C Best hit);ORF_evidence=D2IX49 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-025-F12,J013162A03;Oryzabase=16715;Expression=AK059305;TENOR=Os01t0528800-01;KEGG=Os01t0528800-01
Chr01	irgsp1_rep	five_prime_UTR	19009708	19009880	.	+	.	Parent=Os01t0528800-01
Chr01	irgsp1_rep	CDS	19009881	19010019	.	+	0	Parent=Os01t0528800-01
Chr01	irgsp1_rep	CDS	19010413	19010582	.	+	2	Parent=Os01t0528800-01
Chr01	irgsp1_rep	CDS	19011298	19011486	.	+	0	Parent=Os01t0528800-01
Chr01	irgsp1_rep	CDS	19012493	19012655	.	+	0	Parent=Os01t0528800-01
Chr01	irgsp1_rep	CDS	19013416	19013605	.	+	2	Parent=Os01t0528800-01
Chr01	irgsp1_rep	CDS	19013839	19013998	.	+	1	Parent=Os01t0528800-01
Chr01	irgsp1_rep	three_prime_UTR	19013999	19014136	.	+	.	Parent=Os01t0528800-01
Chr01	irgsp1_rep	mRNA	19059236	19061167	.	+	.	ID=Os01t0529800-01;Name=Os01t0529800-01;Locus_id=Os01g0529800;Note=Similar to Very-long-chain fatty acid condensing enzyme CUT1.;Transcript_evidence=AK101002 (DDBJ%2C Best hit);ORF_evidence=A2WQY0 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: metabolic process (GO:0008152),Biological Process: lipid biosynthetic process (GO:0008610),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Very-long-chain 3-ketoacyl-CoA synthase (IPR012392),FAE1/Type III polyketide synthase-like protein (IPR013601),3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (IPR013747),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);NIAS_FLcDNA=J023147G07;Expression=AK101002;TENOR=Os01t0529800-01;KEGG=Os01t0529800-01
Chr01	irgsp1_rep	five_prime_UTR	19059236	19059310	.	+	.	Parent=Os01t0529800-01
Chr01	irgsp1_rep	CDS	19059311	19060747	.	+	0	Parent=Os01t0529800-01
Chr01	irgsp1_rep	three_prime_UTR	19060748	19061167	.	+	.	Parent=Os01t0529800-01
Chr01	irgsp1_rep	mRNA	19073048	19073890	.	-	.	ID=Os01t0530100-01;Name=Os01t0530100-01;Locus_id=Os01g0530100;Note=Conserved hypothetical protein.;Transcript_evidence=AK107840 (DDBJ%2C Best hit);ORF_evidence=Q8S262 (UniProt);NIAS_FLcDNA=002-133-H09;TENOR=Os01t0530100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	19073569	19073890	.	-	.	Parent=Os01t0530100-01
Chr01	irgsp1_rep	CDS	19073383	19073568	.	-	0	Parent=Os01t0530100-01
Chr01	irgsp1_rep	three_prime_UTR	19073048	19073382	.	-	.	Parent=Os01t0530100-01
Chr01	irgsp1_rep	mRNA	19079255	19081450	.	+	.	ID=Os01t0530300-01;Name=Os01t0530300-01;Locus_id=Os01g0530300;Note=SANT associated domain containing protein.;Transcript_evidence=AK111105 (DDBJ%2C Best hit);ORF_evidence=B8A9Q3 (UniProt);InterPro=SANT associated (IPR015216);NIAS_FLcDNA=002-176-A01;TENOR=Os01t0530300-01
Chr01	irgsp1_rep	five_prime_UTR	19079255	19079300	.	+	.	Parent=Os01t0530300-01
Chr01	irgsp1_rep	CDS	19079301	19079387	.	+	0	Parent=Os01t0530300-01
Chr01	irgsp1_rep	CDS	19079493	19079572	.	+	0	Parent=Os01t0530300-01
Chr01	irgsp1_rep	CDS	19080597	19080741	.	+	1	Parent=Os01t0530300-01
Chr01	irgsp1_rep	CDS	19081149	19081450	.	+	0	Parent=Os01t0530300-01
Chr01	irgsp1_rep	mRNA	19083072	19083314	.	+	.	ID=Os01t0530316-01;Name=Os01t0530316-01;Locus_id=Os01g0530316;Note=Non-protein coding transcript.;Transcript_evidence=AK288151 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080317B09;TENOR=Os01t0530316-01
Chr01	irgsp1_rep	exon	19083072	19083314	.	+	.	Parent=Os01t0530316-01
Chr01	irgsp1_rep	mRNA	19084318	19085025	.	+	.	ID=Os01t0530341-00;Name=Os01t0530341-00;Locus_id=Os01g0530341;Note=Similar to Adenylate cyclase.;Transcript_evidence=FP100821 (DDBJ);ORF_evidence=B6TQK5 (UniProt);TENOR=Os01t0530341-00
Chr01	irgsp1_rep	CDS	19084318	19085025	.	+	0	Parent=Os01t0530341-00
Chr01	irgsp1_rep	mRNA	19085856	19088186	.	+	.	ID=Os01t0530366-01;Name=Os01t0530366-01;Locus_id=Os01g0530366;Note=RNA polymerase Rbp10 domain containing protein.;Transcript_evidence=AK241903 (DDBJ%2C Best hit);ORF_evidence=B6SPH6 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899);InterPro=RNA polymerase Rbp10 (IPR006591);NIAS_FLcDNA=J075030G13;TENOR=Os01t0530366-01;KEGG=Os01t0530366-01
Chr01	irgsp1_rep	five_prime_UTR	19085856	19085991	.	+	.	Parent=Os01t0530366-01
Chr01	irgsp1_rep	CDS	19085992	19086034	.	+	0	Parent=Os01t0530366-01
Chr01	irgsp1_rep	CDS	19086461	19086553	.	+	2	Parent=Os01t0530366-01
Chr01	irgsp1_rep	CDS	19088032	19088054	.	+	2	Parent=Os01t0530366-01
Chr01	irgsp1_rep	three_prime_UTR	19088055	19088186	.	+	.	Parent=Os01t0530366-01
Chr01	irgsp1_rep	mRNA	19089919	19094304	.	+	.	ID=Os01t0530400-01;Name=Os01t0530400-01;Locus_id=Os01g0530400;RAP-DB Gene Symbol Synonym(s)=OsGRXS15;RAP-DB Gene Name Synonym(s)=glutaredoxin 15;CGSNL Gene Symbol=GRX5;CGSNL Gene Name=GLUTAREDOXIN 5;Oryzabase Gene Symbol Synonym(s)=OsGRX5;Oryzabase Gene Name Synonym(s)=glutaredoxin 5;Note=Monothiol glutaredoxin%2C Bacterial blight disease resistance%2C Bakanae disease resistance;Transcript_evidence=AK106476;ORF_evidence=Q0JM76;GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron transfer activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Thioredoxin-like superfamily (IPR036249),Monothiol glutaredoxin-related (IPR004480),Glutaredoxin (IPR002109),Glutaredoxin%2C PICOT-like (IPR033658);NIAS_FLcDNA=002-104-C07;Manual Curation=October 27%2C 2020;Literature_PMID=33097183;Oryzabase=13581;Expression=AK106476;TENOR=Os01t0530400-01;KEGG=Os01t0530400-01;Subcellular location=mitochondrion (GO:0005739),nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	19089919	19090041	.	+	.	Parent=Os01t0530400-01
Chr01	irgsp1_rep	five_prime_UTR	19090164	19090165	.	+	.	Parent=Os01t0530400-01
Chr01	irgsp1_rep	CDS	19090166	19090234	.	+	0	Parent=Os01t0530400-01
Chr01	irgsp1_rep	CDS	19091133	19091309	.	+	0	Parent=Os01t0530400-01
Chr01	irgsp1_rep	CDS	19091443	19091542	.	+	0	Parent=Os01t0530400-01
Chr01	irgsp1_rep	CDS	19091630	19091696	.	+	2	Parent=Os01t0530400-01
Chr01	irgsp1_rep	CDS	19092205	19092279	.	+	1	Parent=Os01t0530400-01
Chr01	irgsp1_rep	CDS	19092383	19092452	.	+	1	Parent=Os01t0530400-01
Chr01	irgsp1_rep	three_prime_UTR	19092453	19092462	.	+	.	Parent=Os01t0530400-01
Chr01	irgsp1_rep	three_prime_UTR	19092587	19092627	.	+	.	Parent=Os01t0530400-01
Chr01	irgsp1_rep	three_prime_UTR	19093530	19094304	.	+	.	Parent=Os01t0530400-01
Chr01	irgsp1_rep	mRNA	19089959	19092841	.	+	.	ID=Os01t0530400-02;Name=Os01t0530400-02;Locus_id=Os01g0530400;CGSNL Gene Symbol=GRX5;CGSNL Gene Name=GLUTAREDOXIN 5;Oryzabase Gene Symbol Synonym(s)=OsGRX5;Oryzabase Gene Name Synonym(s)=glutaredoxin 5;Note=Similar to cDNA clone:002-104-C07%2C full insert sequence.;Transcript_evidence=AK120148 (DDBJ%2C Best hit);ORF_evidence=B7EV32 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin (IPR002109),Monothiol glutaredoxin-related (IPR004480),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=J013029J05;Oryzabase=13581;Expression=AK120148;TENOR=Os01t0530400-02;KEGG=Os01t0530400-02
Chr01	irgsp1_rep	five_prime_UTR	19089959	19090041	.	+	.	Parent=Os01t0530400-02
Chr01	irgsp1_rep	five_prime_UTR	19090159	19091132	.	+	.	Parent=Os01t0530400-02
Chr01	irgsp1_rep	CDS	19091133	19091309	.	+	0	Parent=Os01t0530400-02
Chr01	irgsp1_rep	CDS	19091443	19091542	.	+	0	Parent=Os01t0530400-02
Chr01	irgsp1_rep	CDS	19091630	19091696	.	+	2	Parent=Os01t0530400-02
Chr01	irgsp1_rep	CDS	19092205	19092279	.	+	1	Parent=Os01t0530400-02
Chr01	irgsp1_rep	CDS	19092383	19092452	.	+	1	Parent=Os01t0530400-02
Chr01	irgsp1_rep	three_prime_UTR	19092453	19092841	.	+	.	Parent=Os01t0530400-02
Chr01	irgsp1_rep	mRNA	19089969	19093892	.	+	.	ID=Os01t0530400-03;Name=Os01t0530400-03;Locus_id=Os01g0530400;CGSNL Gene Symbol=GRX5;CGSNL Gene Name=GLUTAREDOXIN 5;Oryzabase Gene Symbol Synonym(s)=OsGRX5;Oryzabase Gene Name Synonym(s)=glutaredoxin 5;Note=Thioredoxin fold domain containing protein.;Transcript_evidence=AK103724 (DDBJ%2C Best hit);ORF_evidence=Q0JM76 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin (IPR002109),Monothiol glutaredoxin-related (IPR004480),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=J033138C10;Oryzabase=13581;Expression=AK103724;TENOR=Os01t0530400-03;KEGG=Os01t0530400-03
Chr01	irgsp1_rep	five_prime_UTR	19089969	19090041	.	+	.	Parent=Os01t0530400-03
Chr01	irgsp1_rep	five_prime_UTR	19090159	19090165	.	+	.	Parent=Os01t0530400-03
Chr01	irgsp1_rep	CDS	19090166	19090234	.	+	0	Parent=Os01t0530400-03
Chr01	irgsp1_rep	CDS	19091133	19091309	.	+	0	Parent=Os01t0530400-03
Chr01	irgsp1_rep	CDS	19091443	19091542	.	+	0	Parent=Os01t0530400-03
Chr01	irgsp1_rep	CDS	19091630	19091696	.	+	2	Parent=Os01t0530400-03
Chr01	irgsp1_rep	CDS	19092205	19092279	.	+	1	Parent=Os01t0530400-03
Chr01	irgsp1_rep	CDS	19092383	19092452	.	+	1	Parent=Os01t0530400-03
Chr01	irgsp1_rep	three_prime_UTR	19092453	19092480	.	+	.	Parent=Os01t0530400-03
Chr01	irgsp1_rep	three_prime_UTR	19092587	19092627	.	+	.	Parent=Os01t0530400-03
Chr01	irgsp1_rep	three_prime_UTR	19093530	19093892	.	+	.	Parent=Os01t0530400-03
Chr01	irgsp1_rep	mRNA	19093176	19094105	.	-	.	ID=Os01t0530450-00;Name=Os01t0530450-00;Locus_id=Os01g0530450;Note=Similar to Biostress-resistance-related protein (Fragment).;Transcript_evidence=BT034572 (DDBJ);ORF_evidence=Q84VJ1 (UniProt);TENOR=Os01t0530450-00
Chr01	irgsp1_rep	five_prime_UTR	19093989	19094105	.	-	.	Parent=Os01t0530450-00
Chr01	irgsp1_rep	five_prime_UTR	19093440	19093469	.	-	.	Parent=Os01t0530450-00
Chr01	irgsp1_rep	CDS	19093333	19093439	.	-	0	Parent=Os01t0530450-00
Chr01	irgsp1_rep	CDS	19093232	19093253	.	-	1	Parent=Os01t0530450-00
Chr01	irgsp1_rep	three_prime_UTR	19093176	19093231	.	-	.	Parent=Os01t0530450-00
Chr01	irgsp1_rep	mRNA	19095631	19097491	.	-	.	ID=Os01t0530500-01;Name=Os01t0530500-01;Locus_id=Os01g0530500;Oryzabase Gene Symbol Synonym(s)=Os_F0571;Note=Protein of unknown function DUF295 domain containing protein.;Transcript_evidence=AK105280 (DDBJ%2C Best hit);ORF_evidence=A2ZTZ4 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174);NIAS_FLcDNA=001-116-C02;Oryzabase=17486;TENOR=Os01t0530500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	19097437	19097491	.	-	0	Parent=Os01t0530500-01
Chr01	irgsp1_rep	CDS	19095881	19096959	.	-	2	Parent=Os01t0530500-01
Chr01	irgsp1_rep	three_prime_UTR	19095631	19095880	.	-	.	Parent=Os01t0530500-01
Chr01	irgsp1_rep	mRNA	19106755	19107548	.	-	.	ID=Os01t0530650-01;Name=Os01t0530650-01;Locus_id=Os01g0530650;Note=Non-protein coding transcript.;Transcript_evidence=AK240872 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065025G09;TENOR=Os01t0530650-01
Chr01	irgsp1_rep	exon	19107180	19107548	.	-	.	Parent=Os01t0530650-01
Chr01	irgsp1_rep	exon	19106755	19107092	.	-	.	Parent=Os01t0530650-01
Chr01	irgsp1_rep	mRNA	19110942	19114994	.	-	.	ID=Os01t0531000-01;Name=Os01t0531000-01;Locus_id=Os01g0531000;Note=RNAse P%2C Rpr2/Rpp21 subunit domain containing protein.;Transcript_evidence=AK071815 (DDBJ%2C Best hit);ORF_evidence=A2WR27 (UniProt);InterPro=RNAse P%2C Rpr2/Rpp21 subunit (IPR007175);NIAS_FLcDNA=J023114D14;TENOR=Os01t0531000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	19114899	19114994	.	-	.	Parent=Os01t0531000-01
Chr01	irgsp1_rep	CDS	19114883	19114898	.	-	0	Parent=Os01t0531000-01
Chr01	irgsp1_rep	CDS	19114754	19114805	.	-	2	Parent=Os01t0531000-01
Chr01	irgsp1_rep	CDS	19111033	19111945	.	-	1	Parent=Os01t0531000-01
Chr01	irgsp1_rep	three_prime_UTR	19110942	19111032	.	-	.	Parent=Os01t0531000-01
Chr01	irgsp1_rep	mRNA	19115283	19122409	.	-	.	ID=Os01t0531200-01;Name=Os01t0531200-01;Locus_id=Os01g0531200;Note=Phospholipase C%2C phosphatidylinositol-specific%2C Y domain domain containing protein.;Transcript_evidence=AK102885 (DDBJ%2C Best hit);ORF_evidence=A2WUV9 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: signal transduction (GO:0007165),Biological Process: intracellular signal transduction (GO:0035556),Molecular Function: phosphatidylinositol phospholipase C activity (GO:0004435);InterPro=Phospholipase C%2C phosphatidylinositol-specific%2C Y domain (IPR001711),Aminotransferase-like%2C plant mobile domain (IPR019557);NIAS_FLcDNA=J033112J11;TENOR=Os01t0531200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	19122016	19122409	.	-	.	Parent=Os01t0531200-01
Chr01	irgsp1_rep	five_prime_UTR	19120550	19120673	.	-	.	Parent=Os01t0531200-01
Chr01	irgsp1_rep	CDS	19120541	19120549	.	-	0	Parent=Os01t0531200-01
Chr01	irgsp1_rep	CDS	19117943	19118212	.	-	0	Parent=Os01t0531200-01
Chr01	irgsp1_rep	CDS	19116536	19117840	.	-	0	Parent=Os01t0531200-01
Chr01	irgsp1_rep	CDS	19115873	19116367	.	-	0	Parent=Os01t0531200-01
Chr01	irgsp1_rep	three_prime_UTR	19115283	19115872	.	-	.	Parent=Os01t0531200-01
Chr01	irgsp1_rep	mRNA	19123194	19126486	.	-	.	ID=Os01t0531300-00;Name=Os01t0531300-00;Locus_id=Os01g0531300;Note=Hypothetical conserved gene.;Transcript_evidence=BT070031 (DDBJ);ORF_evidence=NP_001044436.1 (RefSeq);TENOR=Os01t0531300-00;KEGG=Os01t0531300-00
Chr01	irgsp1_rep	CDS	19126262	19126486	.	-	0	Parent=Os01t0531300-00
Chr01	irgsp1_rep	CDS	19124664	19124738	.	-	0	Parent=Os01t0531300-00
Chr01	irgsp1_rep	CDS	19124460	19124572	.	-	0	Parent=Os01t0531300-00
Chr01	irgsp1_rep	CDS	19124071	19124187	.	-	1	Parent=Os01t0531300-00
Chr01	irgsp1_rep	CDS	19123771	19123839	.	-	1	Parent=Os01t0531300-00
Chr01	irgsp1_rep	CDS	19123411	19123480	.	-	1	Parent=Os01t0531300-00
Chr01	irgsp1_rep	three_prime_UTR	19123194	19123410	.	-	.	Parent=Os01t0531300-00
Chr01	irgsp1_rep	mRNA	19129984	19131278	.	-	.	ID=Os01t0531400-00;Name=Os01t0531400-00;Locus_id=Os01g0531400;Note=Hypothetical conserved gene.;Transcript_evidence=BT018989 (DDBJ);ORF_evidence=NP_001044289.1 (RefSeq);InterPro=Protein of unknown function DUF642 (IPR006946);TENOR=Os01t0531400-00;KEGG=Os01t0531400-00
Chr01	irgsp1_rep	five_prime_UTR	19131230	19131278	.	-	.	Parent=Os01t0531400-00
Chr01	irgsp1_rep	CDS	19130992	19131229	.	-	0	Parent=Os01t0531400-00
Chr01	irgsp1_rep	CDS	19130260	19130852	.	-	2	Parent=Os01t0531400-00
Chr01	irgsp1_rep	three_prime_UTR	19129984	19130259	.	-	.	Parent=Os01t0531400-00
Chr01	irgsp1_rep	mRNA	19135843	19139893	.	+	.	ID=Os01t0531500-01;Name=Os01t0531500-01;Locus_id=Os01g0531500;Note=Dienelactone hydrolase domain containing protein.;Transcript_evidence=AK106208 (DDBJ%2C Best hit);ORF_evidence=B6T599 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Dienelactone hydrolase (IPR002925);NIAS_FLcDNA=001-208-G04;Expression=AK106208;TENOR=Os01t0531500-01;KEGG=Os01t0531500-01 (EC:3.1.1.45)
Chr01	irgsp1_rep	five_prime_UTR	19135843	19135885	.	+	.	Parent=Os01t0531500-01
Chr01	irgsp1_rep	CDS	19135886	19136053	.	+	0	Parent=Os01t0531500-01
Chr01	irgsp1_rep	CDS	19137373	19137515	.	+	0	Parent=Os01t0531500-01
Chr01	irgsp1_rep	CDS	19138146	19138275	.	+	1	Parent=Os01t0531500-01
Chr01	irgsp1_rep	CDS	19139013	19139204	.	+	0	Parent=Os01t0531500-01
Chr01	irgsp1_rep	CDS	19139484	19139696	.	+	0	Parent=Os01t0531500-01
Chr01	irgsp1_rep	three_prime_UTR	19139697	19139893	.	+	.	Parent=Os01t0531500-01
Chr01	irgsp1_rep	mRNA	19135897	19139875	.	+	.	ID=Os01t0531500-02;Name=Os01t0531500-02;Locus_id=Os01g0531500;Note=Similar to protein usf.;Transcript_evidence=AK059992 (DDBJ%2C Best hit),AK104379 (DDBJ%2C Best hit);ORF_evidence=B6T599 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Dienelactone hydrolase (IPR002925);NIAS_FLcDNA=006-301-C04,001-035-G12;TENOR=Os01t0531500-02
Chr01	irgsp1_rep	five_prime_UTR	19135897	19135999	.	+	.	Parent=Os01t0531500-02
Chr01	irgsp1_rep	CDS	19136000	19136053	.	+	0	Parent=Os01t0531500-02
Chr01	irgsp1_rep	CDS	19137373	19137515	.	+	0	Parent=Os01t0531500-02
Chr01	irgsp1_rep	CDS	19138146	19138275	.	+	1	Parent=Os01t0531500-02
Chr01	irgsp1_rep	CDS	19139013	19139204	.	+	0	Parent=Os01t0531500-02
Chr01	irgsp1_rep	CDS	19139484	19139696	.	+	0	Parent=Os01t0531500-02
Chr01	irgsp1_rep	three_prime_UTR	19139697	19139875	.	+	.	Parent=Os01t0531500-02
Chr01	irgsp1_rep	mRNA	19173908	19176093	.	+	.	ID=Os01t0532100-01;Name=Os01t0532100-01;Locus_id=Os01g0532100;Note=Tetratricopeptide TPR2 domain containing protein.;Transcript_evidence=AK106738 (DDBJ%2C Best hit);ORF_evidence=A2WQY9 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=002-115-B01;Expression=AK106738;TENOR=Os01t0532100-01;KEGG=Os01t0532100-01
Chr01	irgsp1_rep	five_prime_UTR	19173908	19174106	.	+	.	Parent=Os01t0532100-01
Chr01	irgsp1_rep	CDS	19174107	19175591	.	+	0	Parent=Os01t0532100-01
Chr01	irgsp1_rep	three_prime_UTR	19175592	19175596	.	+	.	Parent=Os01t0532100-01
Chr01	irgsp1_rep	three_prime_UTR	19175862	19176093	.	+	.	Parent=Os01t0532100-01
Chr01	irgsp1_rep	mRNA	19178310	19185746	.	-	.	ID=Os01t0532200-01;Name=Os01t0532200-01;Locus_id=Os01g0532200;Note=FF domain domain containing protein.;Transcript_evidence=AK105807 (DDBJ%2C Best hit);ORF_evidence=B9EXB9 (UniProt);InterPro=FF domain (IPR002713);NIAS_FLcDNA=001-203-B08;TENOR=Os01t0532200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	19185666	19185746	.	-	0	Parent=Os01t0532200-01
Chr01	irgsp1_rep	CDS	19185385	19185465	.	-	0	Parent=Os01t0532200-01
Chr01	irgsp1_rep	CDS	19185202	19185294	.	-	0	Parent=Os01t0532200-01
Chr01	irgsp1_rep	CDS	19185076	19185129	.	-	0	Parent=Os01t0532200-01
Chr01	irgsp1_rep	CDS	19184870	19184986	.	-	0	Parent=Os01t0532200-01
Chr01	irgsp1_rep	CDS	19184691	19184789	.	-	0	Parent=Os01t0532200-01
Chr01	irgsp1_rep	CDS	19184285	19184332	.	-	0	Parent=Os01t0532200-01
Chr01	irgsp1_rep	CDS	19184103	19184195	.	-	0	Parent=Os01t0532200-01
Chr01	irgsp1_rep	CDS	19183831	19183938	.	-	0	Parent=Os01t0532200-01
Chr01	irgsp1_rep	CDS	19182742	19182806	.	-	0	Parent=Os01t0532200-01
Chr01	irgsp1_rep	CDS	19180703	19180805	.	-	1	Parent=Os01t0532200-01
Chr01	irgsp1_rep	CDS	19180192	19180518	.	-	0	Parent=Os01t0532200-01
Chr01	irgsp1_rep	CDS	19178861	19178995	.	-	0	Parent=Os01t0532200-01
Chr01	irgsp1_rep	three_prime_UTR	19178838	19178860	.	-	.	Parent=Os01t0532200-01
Chr01	irgsp1_rep	three_prime_UTR	19178310	19178685	.	-	.	Parent=Os01t0532200-01
Chr01	irgsp1_rep	mRNA	19178242	19185296	.	-	.	ID=Os01t0532200-02;Name=Os01t0532200-02;Locus_id=Os01g0532200;Note=Hypothetical conserved gene.;Transcript_evidence=AK070288 (DDBJ%2C Best hit);ORF_evidence=B9EXB9 (UniProt);InterPro=FF domain (IPR002713);NIAS_FLcDNA=J023047N14;Expression=AK070288;TENOR=Os01t0532200-02;KEGG=Os01t0532200-02
Chr01	irgsp1_rep	five_prime_UTR	19185295	19185296	.	-	.	Parent=Os01t0532200-02
Chr01	irgsp1_rep	CDS	19185202	19185294	.	-	0	Parent=Os01t0532200-02
Chr01	irgsp1_rep	CDS	19185076	19185129	.	-	0	Parent=Os01t0532200-02
Chr01	irgsp1_rep	CDS	19184870	19184986	.	-	0	Parent=Os01t0532200-02
Chr01	irgsp1_rep	CDS	19184691	19184789	.	-	0	Parent=Os01t0532200-02
Chr01	irgsp1_rep	CDS	19184285	19184332	.	-	0	Parent=Os01t0532200-02
Chr01	irgsp1_rep	CDS	19184103	19184195	.	-	0	Parent=Os01t0532200-02
Chr01	irgsp1_rep	CDS	19183831	19183938	.	-	0	Parent=Os01t0532200-02
Chr01	irgsp1_rep	CDS	19182742	19182806	.	-	0	Parent=Os01t0532200-02
Chr01	irgsp1_rep	CDS	19180703	19180805	.	-	1	Parent=Os01t0532200-02
Chr01	irgsp1_rep	CDS	19180192	19180518	.	-	0	Parent=Os01t0532200-02
Chr01	irgsp1_rep	CDS	19178861	19178995	.	-	0	Parent=Os01t0532200-02
Chr01	irgsp1_rep	three_prime_UTR	19178838	19178860	.	-	.	Parent=Os01t0532200-02
Chr01	irgsp1_rep	three_prime_UTR	19178242	19178685	.	-	.	Parent=Os01t0532200-02
Chr01	irgsp1_rep	mRNA	19200090	19201308	.	-	.	ID=Os01t0532300-01;Name=Os01t0532300-01;Locus_id=Os01g0532300;Note=Conserved hypothetical protein.;Transcript_evidence=AK243074 (DDBJ%2C Best hit);ORF_evidence=NP_001043247.2 (RefSeq);NIAS_FLcDNA=J100019F21;TENOR=Os01t0532300-01;KEGG=Os01t0532300-01
Chr01	irgsp1_rep	five_prime_UTR	19201249	19201308	.	-	.	Parent=Os01t0532300-01
Chr01	irgsp1_rep	CDS	19200496	19201248	.	-	0	Parent=Os01t0532300-01
Chr01	irgsp1_rep	three_prime_UTR	19200090	19200495	.	-	.	Parent=Os01t0532300-01
Chr01	irgsp1_rep	mRNA	19242042	19243812	.	+	.	ID=Os01t0532600-00;Name=Os01t0532600-00;Locus_id=Os01g0532600;CGSNL Gene Symbol=HKT3;CGSNL Gene Name=HIGH-AFFINITY K+ TRANSPORTER 3;Oryzabase Gene Symbol Synonym(s)=OsHKT3%2C OsHKT2%3B3%2C HKT2%3B3;Note=Similar to HKT1 (High-affinity potassium uptake transporter).;Transcript_evidence=AJ491820 (DDBJ%2C Best hit);ORF_evidence=Q3V5P8 (UniProt);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Molecular Function: cation transmembrane transporter activity (GO:0008324);InterPro=Cation transporter (IPR003445);Oryzabase=9019;Expression=AJ491820;TENOR=Os01t0532600-00;KEGG=Os01t0532600-00
Chr01	irgsp1_rep	five_prime_UTR	19242042	19242059	.	+	.	Parent=Os01t0532600-00
Chr01	irgsp1_rep	CDS	19242060	19243162	.	+	0	Parent=Os01t0532600-00
Chr01	irgsp1_rep	CDS	19243246	19243476	.	+	1	Parent=Os01t0532600-00
Chr01	irgsp1_rep	CDS	19243578	19243773	.	+	1	Parent=Os01t0532600-00
Chr01	irgsp1_rep	three_prime_UTR	19243774	19243812	.	+	.	Parent=Os01t0532600-00
Chr01	irgsp1_rep	mRNA	19245153	19248201	.	-	.	ID=Os01t0532700-01;Name=Os01t0532700-01;Locus_id=Os01g0532700;Note=Conserved hypothetical protein.;Transcript_evidence=AK100419 (DDBJ%2C Best hit);ORF_evidence=B9EXC1 (UniProt);NIAS_FLcDNA=J023088A20;TENOR=Os01t0532700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	19248080	19248201	.	-	.	Parent=Os01t0532700-01
Chr01	irgsp1_rep	CDS	19247033	19248079	.	-	0	Parent=Os01t0532700-01
Chr01	irgsp1_rep	three_prime_UTR	19246492	19247032	.	-	.	Parent=Os01t0532700-01
Chr01	irgsp1_rep	three_prime_UTR	19245735	19245945	.	-	.	Parent=Os01t0532700-01
Chr01	irgsp1_rep	three_prime_UTR	19245153	19245627	.	-	.	Parent=Os01t0532700-01
Chr01	irgsp1_rep	mRNA	19246636	19248017	.	+	.	ID=Os01t0532750-00;Name=Os01t0532750-00;Locus_id=Os01g0532750;Note=Non-protein coding transcript.;Transcript_evidence=tplb0034e17 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os01t0532750-00
Chr01	irgsp1_rep	exon	19246636	19247292	.	+	.	Parent=Os01t0532750-00
Chr01	irgsp1_rep	exon	19247354	19248017	.	+	.	Parent=Os01t0532750-00
Chr01	irgsp1_rep	mRNA	19252892	19257320	.	+	.	ID=Os01t0532800-01;Name=Os01t0532800-01;Locus_id=Os01g0532800;Note=Similar to Condensin complex subunit 2.;Transcript_evidence=AK060594 (DDBJ%2C Best hit);ORF_evidence=C5XM96 (UniProt);InterPro=Condensin complex subunit 2/barren (IPR022816);NIAS_FLcDNA=001-024-F04;TENOR=Os01t0532800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	19252892	19252893	.	+	.	Parent=Os01t0532800-01
Chr01	irgsp1_rep	CDS	19252894	19252947	.	+	0	Parent=Os01t0532800-01
Chr01	irgsp1_rep	CDS	19253338	19253491	.	+	0	Parent=Os01t0532800-01
Chr01	irgsp1_rep	CDS	19253573	19253829	.	+	2	Parent=Os01t0532800-01
Chr01	irgsp1_rep	CDS	19253905	19253935	.	+	0	Parent=Os01t0532800-01
Chr01	irgsp1_rep	CDS	19254917	19255056	.	+	2	Parent=Os01t0532800-01
Chr01	irgsp1_rep	CDS	19255957	19256067	.	+	0	Parent=Os01t0532800-01
Chr01	irgsp1_rep	CDS	19256958	19257173	.	+	0	Parent=Os01t0532800-01
Chr01	irgsp1_rep	three_prime_UTR	19257174	19257320	.	+	.	Parent=Os01t0532800-01
Chr01	irgsp1_rep	mRNA	19258575	19266655	.	-	.	ID=Os01t0533000-00;Name=Os01t0533000-00;Locus_id=Os01g0533000;CGSNL Gene Symbol=GSL9;CGSNL Gene Name=BETA-1%2C3-GLUCANASE ACTIVITY 9;Oryzabase Gene Symbol Synonym(s)=OsGSL9;Oryzabase Gene Name Synonym(s)=Oryza sativa callose synthase 9%2C callose synthase 9;Note=Similar to predicted protein.;Transcript_evidence=AK335499 (DDBJ);ORF_evidence=NP_172136.1 (RefSeq);GO=Biological Process: 1%2C3-beta-D-glucan biosynthetic process (GO:0006075),Cellular Component: 1%2C3-beta-D-glucan synthase complex (GO:0000148),Cellular Component: membrane (GO:0016020),Molecular Function: 1%2C3-beta-D-glucan synthase activity (GO:0003843);InterPro=Glycosyl transferase%2C family 48 (IPR003440);Oryzabase=8544;TENOR=Os01t0533000-00;KEGG=Os01t0533000-00 (EC:2.4.1.34)
Chr01	irgsp1_rep	CDS	19266533	19266655	.	-	0	Parent=Os01t0533000-00
Chr01	irgsp1_rep	CDS	19265837	19265955	.	-	0	Parent=Os01t0533000-00
Chr01	irgsp1_rep	CDS	19265663	19265746	.	-	1	Parent=Os01t0533000-00
Chr01	irgsp1_rep	CDS	19260929	19261041	.	-	1	Parent=Os01t0533000-00
Chr01	irgsp1_rep	CDS	19260624	19260853	.	-	2	Parent=Os01t0533000-00
Chr01	irgsp1_rep	CDS	19259397	19260197	.	-	0	Parent=Os01t0533000-00
Chr01	irgsp1_rep	CDS	19259247	19259297	.	-	0	Parent=Os01t0533000-00
Chr01	irgsp1_rep	CDS	19258980	19259165	.	-	0	Parent=Os01t0533000-00
Chr01	irgsp1_rep	CDS	19258575	19258811	.	-	0	Parent=Os01t0533000-00
Chr01	irgsp1_rep	mRNA	19275013	19282465	.	-	.	ID=Os01t0533100-00;Name=Os01t0533100-00;Locus_id=Os01g0533100;CGSNL Gene Symbol=GSL9;CGSNL Gene Name=BETA-1%2C3-GLUCANASE ACTIVITY 9;Oryzabase Gene Symbol Synonym(s)=OsGSL9;Oryzabase Gene Name Synonym(s)=Oryza sativa callose synthase 9%2C callose synthase 9;Note=Similar to ATGSL07 (glucan synthase-like 7)%3B 1%2C3-beta-glucan synthase/ transferase%2C transferring glycosyl groups.;Transcript_evidence=FP091469 (DDBJ);ORF_evidence=NP_172136.1 (RefSeq);Oryzabase=8544;TENOR=Os01t0533100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	19282267	19282465	.	-	.	Parent=Os01t0533100-00
Chr01	irgsp1_rep	CDS	19282050	19282266	.	-	0	Parent=Os01t0533100-00
Chr01	irgsp1_rep	CDS	19281469	19281569	.	-	2	Parent=Os01t0533100-00
Chr01	irgsp1_rep	CDS	19278674	19278786	.	-	0	Parent=Os01t0533100-00
Chr01	irgsp1_rep	CDS	19278486	19278570	.	-	1	Parent=Os01t0533100-00
Chr01	irgsp1_rep	CDS	19278270	19278380	.	-	0	Parent=Os01t0533100-00
Chr01	irgsp1_rep	CDS	19278040	19278180	.	-	0	Parent=Os01t0533100-00
Chr01	irgsp1_rep	CDS	19277202	19277306	.	-	0	Parent=Os01t0533100-00
Chr01	irgsp1_rep	CDS	19276976	19277067	.	-	0	Parent=Os01t0533100-00
Chr01	irgsp1_rep	CDS	19276774	19276897	.	-	1	Parent=Os01t0533100-00
Chr01	irgsp1_rep	CDS	19275572	19275700	.	-	0	Parent=Os01t0533100-00
Chr01	irgsp1_rep	CDS	19275417	19275493	.	-	0	Parent=Os01t0533100-00
Chr01	irgsp1_rep	CDS	19275185	19275284	.	-	1	Parent=Os01t0533100-00
Chr01	irgsp1_rep	three_prime_UTR	19275013	19275184	.	-	.	Parent=Os01t0533100-00
Chr01	irgsp1_rep	mRNA	19295569	19302138	.	-	.	ID=Os01t0533400-01;Name=Os01t0533400-01;Locus_id=Os01g0533400;CGSNL Gene Symbol=BGAL5;CGSNL Gene Name=BETA-GALACTOSIDASE 5;Oryzabase Gene Symbol Synonym(s)=OsBgal5%2C OsBGal5%2C RMP1;Oryzabase Gene Name Synonym(s)=Beta-galactosidase 1%2C Lactase 1%2C rice microspore-preferred 1;Note=Glycoside hydrolase%2C family 35 protein.;Transcript_evidence=AK119447 (DDBJ%2C Best hit);ORF_evidence=B8A9N7 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: sugar binding (GO:0005529),Molecular Function: cation binding (GO:0043169);InterPro=D-galactoside/L-rhamnose binding SUEL lectin domain (IPR000922),Glycoside hydrolase%2C family 35 (IPR001944),Galactose-binding domain-like (IPR008979),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 35%2C conserved site (IPR019801);NIAS_FLcDNA=001-133-D03;Oryzabase=8293;Expression=AK119447;TENOR=Os01t0533400-01;KEGG=Os01t0533400-01
Chr01	irgsp1_rep	five_prime_UTR	19302033	19302138	.	-	.	Parent=Os01t0533400-01
Chr01	irgsp1_rep	CDS	19301853	19302032	.	-	0	Parent=Os01t0533400-01
Chr01	irgsp1_rep	CDS	19300343	19300438	.	-	0	Parent=Os01t0533400-01
Chr01	irgsp1_rep	CDS	19300107	19300219	.	-	0	Parent=Os01t0533400-01
Chr01	irgsp1_rep	CDS	19299713	19299779	.	-	1	Parent=Os01t0533400-01
Chr01	irgsp1_rep	CDS	19299521	19299613	.	-	0	Parent=Os01t0533400-01
Chr01	irgsp1_rep	CDS	19299241	19299393	.	-	0	Parent=Os01t0533400-01
Chr01	irgsp1_rep	CDS	19299047	19299135	.	-	0	Parent=Os01t0533400-01
Chr01	irgsp1_rep	CDS	19298801	19298906	.	-	1	Parent=Os01t0533400-01
Chr01	irgsp1_rep	CDS	19298629	19298716	.	-	0	Parent=Os01t0533400-01
Chr01	irgsp1_rep	CDS	19298391	19298509	.	-	2	Parent=Os01t0533400-01
Chr01	irgsp1_rep	CDS	19298131	19298292	.	-	0	Parent=Os01t0533400-01
Chr01	irgsp1_rep	CDS	19297832	19298028	.	-	0	Parent=Os01t0533400-01
Chr01	irgsp1_rep	CDS	19297610	19297698	.	-	1	Parent=Os01t0533400-01
Chr01	irgsp1_rep	CDS	19297354	19297463	.	-	2	Parent=Os01t0533400-01
Chr01	irgsp1_rep	CDS	19297121	19297234	.	-	0	Parent=Os01t0533400-01
Chr01	irgsp1_rep	CDS	19296917	19297024	.	-	0	Parent=Os01t0533400-01
Chr01	irgsp1_rep	CDS	19295843	19296442	.	-	0	Parent=Os01t0533400-01
Chr01	irgsp1_rep	three_prime_UTR	19295569	19295842	.	-	.	Parent=Os01t0533400-01
Chr01	irgsp1_rep	mRNA	19302623	19303257	.	-	.	ID=Os01t0533450-00;Name=Os01t0533450-00;Locus_id=Os01g0533450;Note=Similar to RNA-binding protein Nova-1.;Transcript_evidence=FP093992 (DDBJ);ORF_evidence=B6UI46 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=K Homology%2C type 1 (IPR004088),K Homology%2C prokaryotic type (IPR009019),K Homology%2C type 1%2C subgroup (IPR018111);TENOR=Os01t0533450-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	19303045	19303257	.	-	.	Parent=Os01t0533450-00
Chr01	irgsp1_rep	CDS	19302628	19303044	.	-	0	Parent=Os01t0533450-00
Chr01	irgsp1_rep	three_prime_UTR	19302623	19302627	.	-	.	Parent=Os01t0533450-00
Chr01	irgsp1_rep	mRNA	19303393	19306036	.	-	.	ID=Os01t0533500-01;Name=Os01t0533500-01;Locus_id=Os01g0533500;CGSNL Gene Symbol=GSL4;CGSNL Gene Name=BETA-1%2C3-GLUCANASE ACTIVITY 4;Oryzabase Gene Symbol Synonym(s)=OsGSL4;Oryzabase Gene Name Synonym(s)=Oryza sativa callose synthase 4%2C callose synthase 4;Note=Similar to Callose synthase 1 catalytic subunit.;Transcript_evidence=AK064446 (DDBJ%2C Best hit);ORF_evidence=NP_172136.1 (RefSeq);GO=Biological Process: 1%2C3-beta-D-glucan biosynthetic process (GO:0006075),Cellular Component: 1%2C3-beta-D-glucan synthase complex (GO:0000148),Cellular Component: membrane (GO:0016020),Molecular Function: 1%2C3-beta-D-glucan synthase activity (GO:0003843);InterPro=Glycosyl transferase%2C family 48 (IPR003440);NIAS_FLcDNA=002-110-F01;Oryzabase=8539;Expression=AK064446;TENOR=Os01t0533500-01;KEGG=Os01t0533500-01 (EC:2.4.1.-)
Chr01	irgsp1_rep	five_prime_UTR	19306018	19306036	.	-	.	Parent=Os01t0533500-01
Chr01	irgsp1_rep	CDS	19305727	19306017	.	-	0	Parent=Os01t0533500-01
Chr01	irgsp1_rep	CDS	19304482	19305279	.	-	0	Parent=Os01t0533500-01
Chr01	irgsp1_rep	CDS	19304345	19304395	.	-	0	Parent=Os01t0533500-01
Chr01	irgsp1_rep	CDS	19304085	19304270	.	-	0	Parent=Os01t0533500-01
Chr01	irgsp1_rep	CDS	19303614	19303970	.	-	0	Parent=Os01t0533500-01
Chr01	irgsp1_rep	three_prime_UTR	19303393	19303613	.	-	.	Parent=Os01t0533500-01
Chr01	irgsp1_rep	mRNA	19317853	19325937	.	-	.	ID=Os01t0533800-00;Name=Os01t0533800-00;Locus_id=Os01g0533800;Note=Conserved hypothetical protein.;Transcript_evidence=FP091469 (DDBJ);ORF_evidence=NP_001172393.1 (RefSeq);TENOR=Os01t0533800-00
Chr01	irgsp1_rep	five_prime_UTR	19325914	19325937	.	-	.	Parent=Os01t0533800-00
Chr01	irgsp1_rep	CDS	19325780	19325913	.	-	0	Parent=Os01t0533800-00
Chr01	irgsp1_rep	CDS	19322116	19322301	.	-	1	Parent=Os01t0533800-00
Chr01	irgsp1_rep	CDS	19321098	19321181	.	-	1	Parent=Os01t0533800-00
Chr01	irgsp1_rep	CDS	19320391	19320463	.	-	1	Parent=Os01t0533800-00
Chr01	irgsp1_rep	three_prime_UTR	19320362	19320390	.	-	.	Parent=Os01t0533800-00
Chr01	irgsp1_rep	three_prime_UTR	19320203	19320283	.	-	.	Parent=Os01t0533800-00
Chr01	irgsp1_rep	three_prime_UTR	19319996	19320112	.	-	.	Parent=Os01t0533800-00
Chr01	irgsp1_rep	three_prime_UTR	19319758	19319889	.	-	.	Parent=Os01t0533800-00
Chr01	irgsp1_rep	three_prime_UTR	19319491	19319597	.	-	.	Parent=Os01t0533800-00
Chr01	irgsp1_rep	three_prime_UTR	19319050	19319284	.	-	.	Parent=Os01t0533800-00
Chr01	irgsp1_rep	three_prime_UTR	19318026	19318145	.	-	.	Parent=Os01t0533800-00
Chr01	irgsp1_rep	three_prime_UTR	19317853	19317931	.	-	.	Parent=Os01t0533800-00
Chr01	irgsp1_rep	mRNA	19351121	19353185	.	-	.	ID=Os01t0533850-00;Name=Os01t0533850-00;Locus_id=Os01g0533850;Note=Non-protein coding transcript.;Transcript_evidence=BT035604 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0533850-00
Chr01	irgsp1_rep	exon	19352973	19353185	.	-	.	Parent=Os01t0533850-00
Chr01	irgsp1_rep	exon	19351121	19351346	.	-	.	Parent=Os01t0533850-00
Chr01	irgsp1_rep	mRNA	19352055	19358060	.	+	.	ID=Os01t0533900-01;Name=Os01t0533900-01;Locus_id=Os01g0533900;CGSNL Gene Symbol=MDR6;CGSNL Gene Name=MULTIDRUG RESISTANCE 6;Oryzabase Gene Symbol Synonym(s)=OsABCB2%2C ABCB2%2C OsPGP2%2C OsMDR6%2C OsABCB2_1%2C OsABCB2_2;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCB subgroup member 2%2C P-Glycoprotein 2;Note=Similar to Multidrug resistance protein 1 homolog.;Transcript_evidence=AK101194 (DDBJ%2C Best hit);ORF_evidence=Q7FMW2 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);NIAS_FLcDNA=J033030J11;Oryzabase=11922;TENOR=Os01t0533900-01
Chr01	irgsp1_rep	five_prime_UTR	19352055	19352186	.	+	.	Parent=Os01t0533900-01
Chr01	irgsp1_rep	CDS	19352187	19352207	.	+	0	Parent=Os01t0533900-01
Chr01	irgsp1_rep	CDS	19352743	19352797	.	+	0	Parent=Os01t0533900-01
Chr01	irgsp1_rep	CDS	19353007	19353182	.	+	2	Parent=Os01t0533900-01
Chr01	irgsp1_rep	CDS	19353923	19354144	.	+	0	Parent=Os01t0533900-01
Chr01	irgsp1_rep	CDS	19354249	19354487	.	+	0	Parent=Os01t0533900-01
Chr01	irgsp1_rep	CDS	19354990	19355515	.	+	1	Parent=Os01t0533900-01
Chr01	irgsp1_rep	CDS	19355597	19355870	.	+	0	Parent=Os01t0533900-01
Chr01	irgsp1_rep	CDS	19356252	19356915	.	+	2	Parent=Os01t0533900-01
Chr01	irgsp1_rep	CDS	19357637	19357865	.	+	1	Parent=Os01t0533900-01
Chr01	irgsp1_rep	CDS	19357961	19358060	.	+	0	Parent=Os01t0533900-01
Chr01	irgsp1_rep	mRNA	19356270	19359444	.	+	.	ID=Os01t0533900-02;Name=Os01t0533900-02;Locus_id=Os01g0533900;CGSNL Gene Symbol=MDR6;CGSNL Gene Name=MULTIDRUG RESISTANCE 6;Oryzabase Gene Symbol Synonym(s)=OsABCB2%2C ABCB2%2C OsPGP2%2C OsMDR6%2C OsABCB2_1%2C OsABCB2_2;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCB subgroup member 2%2C P-Glycoprotein 2;Note=Similar to MDR-like ABC transporter.;Transcript_evidence=AK106698 (DDBJ%2C Best hit);ORF_evidence=Q7FMW2 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C integral membrane type 1 (IPR017940);NIAS_FLcDNA=002-114-D11;Oryzabase=11922;Expression=AK106698;TENOR=Os01t0533900-02;KEGG=Os01t0533900-02
Chr01	irgsp1_rep	five_prime_UTR	19356270	19356271	.	+	.	Parent=Os01t0533900-02
Chr01	irgsp1_rep	CDS	19356272	19356915	.	+	0	Parent=Os01t0533900-02
Chr01	irgsp1_rep	CDS	19357637	19357865	.	+	1	Parent=Os01t0533900-02
Chr01	irgsp1_rep	CDS	19357961	19358227	.	+	0	Parent=Os01t0533900-02
Chr01	irgsp1_rep	CDS	19358320	19358358	.	+	0	Parent=Os01t0533900-02
Chr01	irgsp1_rep	three_prime_UTR	19358359	19358567	.	+	.	Parent=Os01t0533900-02
Chr01	irgsp1_rep	three_prime_UTR	19358661	19359444	.	+	.	Parent=Os01t0533900-02
Chr01	irgsp1_rep	mRNA	19381153	19387198	.	+	.	ID=Os01t0534700-00;Name=Os01t0534700-00;Locus_id=Os01g0534700;CGSNL Gene Symbol=MDR5;CGSNL Gene Name=MULTIDRUG RESISTANCE 5;Oryzabase Gene Symbol Synonym(s)=OsABCB3%2C ABCB3%2C OsPGP3%2C OsMDR5%2C OsISC34;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCB subgroup member 3%2C P-Glycoprotein 3%2C multidrug resistance 5%2C Iron-sulfur cluster protein 34;Note=ABC transporter%2C transmembrane domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001172394.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);Oryzabase=11923;TENOR=Os01t0534700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	19381153	19381224	.	+	0	Parent=Os01t0534700-00
Chr01	irgsp1_rep	CDS	19381910	19382050	.	+	0	Parent=Os01t0534700-00
Chr01	irgsp1_rep	CDS	19382224	19382462	.	+	0	Parent=Os01t0534700-00
Chr01	irgsp1_rep	CDS	19383091	19383616	.	+	1	Parent=Os01t0534700-00
Chr01	irgsp1_rep	CDS	19383691	19383964	.	+	0	Parent=Os01t0534700-00
Chr01	irgsp1_rep	CDS	19384414	19385077	.	+	2	Parent=Os01t0534700-00
Chr01	irgsp1_rep	CDS	19385494	19385722	.	+	1	Parent=Os01t0534700-00
Chr01	irgsp1_rep	CDS	19385814	19386080	.	+	0	Parent=Os01t0534700-00
Chr01	irgsp1_rep	CDS	19386198	19386461	.	+	0	Parent=Os01t0534700-00
Chr01	irgsp1_rep	CDS	19386554	19387198	.	+	0	Parent=Os01t0534700-00
Chr01	irgsp1_rep	mRNA	19389831	19392818	.	+	.	ID=Os01t0534800-01;Name=Os01t0534800-01;Locus_id=Os01g0534800;Note=Similar to PRLI-interacting factor K (Fragment).;Transcript_evidence=AK072168 (DDBJ%2C Best hit);ORF_evidence=B0BLB9 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Ubiquitin fusion degradation protein UFD1 (IPR004854),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J013131B08;Expression=AK072168;TENOR=Os01t0534800-01;KEGG=Os01t0534800-01
Chr01	irgsp1_rep	five_prime_UTR	19389831	19390021	.	+	.	Parent=Os01t0534800-01
Chr01	irgsp1_rep	CDS	19390022	19390204	.	+	0	Parent=Os01t0534800-01
Chr01	irgsp1_rep	CDS	19390684	19391982	.	+	0	Parent=Os01t0534800-01
Chr01	irgsp1_rep	CDS	19392330	19392557	.	+	0	Parent=Os01t0534800-01
Chr01	irgsp1_rep	three_prime_UTR	19392558	19392818	.	+	.	Parent=Os01t0534800-01
Chr01	irgsp1_rep	mRNA	19389923	19392838	.	+	.	ID=Os01t0534800-02;Name=Os01t0534800-02;Locus_id=Os01g0534800;Note=Similar to PRLI-interacting factor K (Fragment).;Transcript_evidence=AK104278 (DDBJ%2C Best hit);ORF_evidence=B0BLB9 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Ubiquitin fusion degradation protein UFD1 (IPR004854),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=001-003-H07;Expression=AK104278;TENOR=Os01t0534800-02;KEGG=Os01t0534800-02
Chr01	irgsp1_rep	five_prime_UTR	19389923	19390021	.	+	.	Parent=Os01t0534800-02
Chr01	irgsp1_rep	CDS	19390022	19390204	.	+	0	Parent=Os01t0534800-02
Chr01	irgsp1_rep	CDS	19390684	19391982	.	+	0	Parent=Os01t0534800-02
Chr01	irgsp1_rep	CDS	19392330	19392557	.	+	0	Parent=Os01t0534800-02
Chr01	irgsp1_rep	three_prime_UTR	19392558	19392838	.	+	.	Parent=Os01t0534800-02
Chr01	irgsp1_rep	mRNA	19394542	19405480	.	-	.	ID=Os01t0534900-01;Name=Os01t0534900-01;Locus_id=Os01g0534900;CGSNL Gene Symbol=OSCA1.1;CGSNL Gene Name=HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 1.1;Oryzabase Gene Symbol Synonym(s)=OsOSCA1.1%2C OsIOSCA1.1%2C OsDDP1%2C DDP1%2C OsDDP1.1%2C OsDDP1.2%2C OsDDP1.3%2C OsDDP1.4;Oryzabase Gene Name Synonym(s)=Hyperosmolality-gated calcium-permeable channel 1.1%2C DUF221 Domain containing Protein 1;Note=Similar to Hv711N16.16 (Fragment).;Transcript_evidence=AK103608 (DDBJ%2C Best hit);ORF_evidence=B6SS81 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Domain of unknown function DUF221 (IPR003864);NIAS_FLcDNA=J033133I03;Oryzabase=19651;Expression=AK103608;TENOR=Os01t0534900-01;KEGG=Os01t0534900-01
Chr01	irgsp1_rep	five_prime_UTR	19405073	19405480	.	-	.	Parent=Os01t0534900-01
Chr01	irgsp1_rep	five_prime_UTR	19403228	19403234	.	-	.	Parent=Os01t0534900-01
Chr01	irgsp1_rep	CDS	19402914	19403227	.	-	0	Parent=Os01t0534900-01
Chr01	irgsp1_rep	CDS	19402398	19402544	.	-	1	Parent=Os01t0534900-01
Chr01	irgsp1_rep	CDS	19401701	19401836	.	-	1	Parent=Os01t0534900-01
Chr01	irgsp1_rep	CDS	19400918	19401019	.	-	0	Parent=Os01t0534900-01
Chr01	irgsp1_rep	CDS	19400530	19400649	.	-	0	Parent=Os01t0534900-01
Chr01	irgsp1_rep	CDS	19400312	19400392	.	-	0	Parent=Os01t0534900-01
Chr01	irgsp1_rep	CDS	19399671	19400011	.	-	0	Parent=Os01t0534900-01
Chr01	irgsp1_rep	CDS	19398402	19398647	.	-	1	Parent=Os01t0534900-01
Chr01	irgsp1_rep	CDS	19397364	19397688	.	-	1	Parent=Os01t0534900-01
Chr01	irgsp1_rep	CDS	19396095	19396328	.	-	0	Parent=Os01t0534900-01
Chr01	irgsp1_rep	CDS	19394678	19394938	.	-	0	Parent=Os01t0534900-01
Chr01	irgsp1_rep	three_prime_UTR	19394542	19394677	.	-	.	Parent=Os01t0534900-01
Chr01	irgsp1_rep	mRNA	19398513	19403233	.	+	.	ID=Os01t0535001-00;Name=Os01t0535001-00;Locus_id=Os01g0535001;Note=Non-protein coding transcript.;Transcript_evidence=AK376405 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0535001-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	exon	19398513	19398657	.	+	.	Parent=Os01t0535001-00
Chr01	irgsp1_rep	exon	19399684	19399998	.	+	.	Parent=Os01t0535001-00
Chr01	irgsp1_rep	exon	19400298	19400494	.	+	.	Parent=Os01t0535001-00
Chr01	irgsp1_rep	exon	19400897	19401017	.	+	.	Parent=Os01t0535001-00
Chr01	irgsp1_rep	exon	19401699	19401818	.	+	.	Parent=Os01t0535001-00
Chr01	irgsp1_rep	exon	19402378	19402552	.	+	.	Parent=Os01t0535001-00
Chr01	irgsp1_rep	exon	19402923	19403233	.	+	.	Parent=Os01t0535001-00
Chr01	irgsp1_rep	mRNA	19434294	19435079	.	-	.	ID=Os01t0535100-00;Name=Os01t0535100-00;Locus_id=Os01g0535100;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=EU974808 (DDBJ);ORF_evidence=Q8GSZ2 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os01t0535100-00
Chr01	irgsp1_rep	CDS	19434294	19435079	.	-	0	Parent=Os01t0535100-00
Chr01	irgsp1_rep	mRNA	19437901	19438842	.	-	.	ID=Os01t0535300-00;Name=Os01t0535300-00;Locus_id=Os01g0535300;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=EU965619 (DDBJ);ORF_evidence=Q5JLD9 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os01t0535300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	19437901	19438842	.	-	0	Parent=Os01t0535300-00
Chr01	irgsp1_rep	mRNA	19454154	19458225	.	-	.	ID=Os01t0535400-01;Name=Os01t0535400-01;Locus_id=Os01g0535400;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK065803 (DDBJ%2C Best hit);ORF_evidence=B9EXD2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Gnk2-homologous domain (IPR002902),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J013036D01;TENOR=Os01t0535400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	19458036	19458225	.	-	.	Parent=Os01t0535400-01
Chr01	irgsp1_rep	five_prime_UTR	19456835	19457967	.	-	.	Parent=Os01t0535400-01
Chr01	irgsp1_rep	CDS	19456435	19456834	.	-	0	Parent=Os01t0535400-01
Chr01	irgsp1_rep	CDS	19456222	19456341	.	-	2	Parent=Os01t0535400-01
Chr01	irgsp1_rep	CDS	19455927	19456105	.	-	2	Parent=Os01t0535400-01
Chr01	irgsp1_rep	CDS	19455568	19455795	.	-	0	Parent=Os01t0535400-01
Chr01	irgsp1_rep	three_prime_UTR	19455195	19455567	.	-	.	Parent=Os01t0535400-01
Chr01	irgsp1_rep	three_prime_UTR	19454949	19455099	.	-	.	Parent=Os01t0535400-01
Chr01	irgsp1_rep	three_prime_UTR	19454154	19454869	.	-	.	Parent=Os01t0535400-01
Chr01	irgsp1_rep	mRNA	19454577	19456091	.	+	.	ID=Os01t0535650-00;Name=Os01t0535650-00;Locus_id=Os01g0535650;Note=Hypothetical protein.;Transcript_evidence=tplb0040j01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0535650-00
Chr01	irgsp1_rep	CDS	19454577	19454903	.	+	0	Parent=Os01t0535650-00
Chr01	irgsp1_rep	CDS	19454989	19455092	.	+	0	Parent=Os01t0535650-00
Chr01	irgsp1_rep	CDS	19455181	19455256	.	+	1	Parent=Os01t0535650-00
Chr01	irgsp1_rep	three_prime_UTR	19455257	19455445	.	+	.	Parent=Os01t0535650-00
Chr01	irgsp1_rep	three_prime_UTR	19455598	19455788	.	+	.	Parent=Os01t0535650-00
Chr01	irgsp1_rep	three_prime_UTR	19455917	19456091	.	+	.	Parent=Os01t0535650-00
Chr01	irgsp1_rep	mRNA	19466307	19468872	.	+	.	ID=Os01t0535900-01;Name=Os01t0535900-01;Locus_id=Os01g0535900;Note=Similar to methyltransferase.;Transcript_evidence=AK099631 (DDBJ%2C Best hit);ORF_evidence=XP_002873842.1 (RefSeq);GO=Biological Process: tRNA modification (GO:0006400),Molecular Function: tRNA (guanine-N7-)-methyltransferase activity (GO:0008176);InterPro=tRNA (guanine-N-7) methyltransferase (IPR003358);NIAS_FLcDNA=J013058F01;TENOR=Os01t0535900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	19466307	19466606	.	+	.	Parent=Os01t0535900-01
Chr01	irgsp1_rep	CDS	19466607	19466711	.	+	0	Parent=Os01t0535900-01
Chr01	irgsp1_rep	CDS	19466809	19466881	.	+	0	Parent=Os01t0535900-01
Chr01	irgsp1_rep	CDS	19466996	19467075	.	+	2	Parent=Os01t0535900-01
Chr01	irgsp1_rep	CDS	19467183	19467232	.	+	0	Parent=Os01t0535900-01
Chr01	irgsp1_rep	CDS	19467326	19467410	.	+	1	Parent=Os01t0535900-01
Chr01	irgsp1_rep	CDS	19467530	19467628	.	+	0	Parent=Os01t0535900-01
Chr01	irgsp1_rep	CDS	19468000	19468236	.	+	0	Parent=Os01t0535900-01
Chr01	irgsp1_rep	three_prime_UTR	19468237	19468872	.	+	.	Parent=Os01t0535900-01
Chr01	irgsp1_rep	mRNA	19468105	19469005	.	+	.	ID=Os01t0535900-02;Name=Os01t0535900-02;Locus_id=Os01g0535900;Note=Similar to predicted protein.;Transcript_evidence=AK061630 (DDBJ%2C Best hit);ORF_evidence=XP_002873842.1 (RefSeq);NIAS_FLcDNA=001-036-A01;Expression=AK061630;TENOR=Os01t0535900-02;KEGG=Os01t0535900-02
Chr01	irgsp1_rep	CDS	19468105	19468236	.	+	0	Parent=Os01t0535900-02
Chr01	irgsp1_rep	three_prime_UTR	19468237	19469005	.	+	.	Parent=Os01t0535900-02
Chr01	irgsp1_rep	mRNA	19469262	19477590	.	-	.	ID=Os01t0536000-01;Name=Os01t0536000-01;Locus_id=Os01g0536000;CGSNL Gene Symbol=CIPK08;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 8;Oryzabase Gene Symbol Synonym(s)=OsCIPK08%2C CIPK8%2C OsCIPK8;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 8;Note=Similar to CBL-interacting serine/threonine-protein kinase 24 (EC 2.7.1.37) (SNF1-related kinase 3.11) (SALT OVERLY SENSITIVE 2 protein).;Transcript_evidence=AK120431 (DDBJ%2C Best hit);ORF_evidence=Q5JLD8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),NAF domain (IPR004041),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),NAF/FISL domain (IPR018451);NIAS_FLcDNA=J013096H24;Oryzabase=7395;Expression=AK120431;TENOR=Os01t0536000-01;KEGG=Os01t0536000-01 (EC:2.7.1.37%2C EC:2.7.11.11)
Chr01	irgsp1_rep	five_prime_UTR	19477436	19477590	.	-	.	Parent=Os01t0536000-01
Chr01	irgsp1_rep	CDS	19477265	19477435	.	-	0	Parent=Os01t0536000-01
Chr01	irgsp1_rep	CDS	19476628	19476690	.	-	0	Parent=Os01t0536000-01
Chr01	irgsp1_rep	CDS	19476446	19476517	.	-	0	Parent=Os01t0536000-01
Chr01	irgsp1_rep	CDS	19476112	19476219	.	-	0	Parent=Os01t0536000-01
Chr01	irgsp1_rep	CDS	19475958	19476032	.	-	0	Parent=Os01t0536000-01
Chr01	irgsp1_rep	CDS	19475832	19475885	.	-	0	Parent=Os01t0536000-01
Chr01	irgsp1_rep	CDS	19473655	19473780	.	-	0	Parent=Os01t0536000-01
Chr01	irgsp1_rep	CDS	19472736	19472825	.	-	0	Parent=Os01t0536000-01
Chr01	irgsp1_rep	CDS	19472465	19472587	.	-	0	Parent=Os01t0536000-01
Chr01	irgsp1_rep	CDS	19472033	19472146	.	-	0	Parent=Os01t0536000-01
Chr01	irgsp1_rep	CDS	19471375	19471491	.	-	0	Parent=Os01t0536000-01
Chr01	irgsp1_rep	CDS	19470453	19470509	.	-	0	Parent=Os01t0536000-01
Chr01	irgsp1_rep	CDS	19470279	19470353	.	-	0	Parent=Os01t0536000-01
Chr01	irgsp1_rep	CDS	19469672	19469767	.	-	0	Parent=Os01t0536000-01
Chr01	irgsp1_rep	three_prime_UTR	19469650	19469671	.	-	.	Parent=Os01t0536000-01
Chr01	irgsp1_rep	three_prime_UTR	19469262	19469544	.	-	.	Parent=Os01t0536000-01
Chr01	irgsp1_rep	mRNA	19488074	19488533	.	+	.	ID=Os01t0536200-00;Name=Os01t0536200-00;Locus_id=Os01g0536200;Note=Conserved hypothetical protein.;Transcript_evidence=AK372466 (DDBJ);ORF_evidence=Q6K2H9 (UniProt);TENOR=Os01t0536200-00
Chr01	irgsp1_rep	CDS	19488074	19488427	.	+	0	Parent=Os01t0536200-00
Chr01	irgsp1_rep	three_prime_UTR	19488428	19488533	.	+	.	Parent=Os01t0536200-00
Chr01	irgsp1_rep	mRNA	19505311	19508410	.	-	.	ID=Os01t0536400-01;Name=Os01t0536400-01;Locus_id=Os01g0536400;CGSNL Gene Symbol=2ODD30;CGSNL Gene Name=2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 30;Oryzabase Gene Symbol Synonym(s)=2-ODD30%2C Os2-ODD30%2C Os2ODD30;Oryzabase Gene Name Synonym(s)=2-oxoglutarate-dependent dioxygenase 30;Note=Isopenicillin N synthase family protein.;Transcript_evidence=AK243472 (DDBJ%2C Best hit);ORF_evidence=NP_001043260.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Isopenicillin N synthase (IPR002283),Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=J100072E06;Oryzabase=22631;TENOR=Os01t0536400-01;KEGG=Os01t0536400-01
Chr01	irgsp1_rep	five_prime_UTR	19508368	19508410	.	-	.	Parent=Os01t0536400-01
Chr01	irgsp1_rep	CDS	19507438	19508367	.	-	0	Parent=Os01t0536400-01
Chr01	irgsp1_rep	CDS	19505533	19505793	.	-	0	Parent=Os01t0536400-01
Chr01	irgsp1_rep	three_prime_UTR	19505311	19505532	.	-	.	Parent=Os01t0536400-01
Chr01	irgsp1_rep	mRNA	19507442	19508342	.	+	.	ID=Os01t0536433-00;Name=Os01t0536433-00;Locus_id=Os01g0536433;Note=Hypothetical protein.;Transcript_evidence=AK376085 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0536433-00
Chr01	irgsp1_rep	five_prime_UTR	19507442	19507785	.	+	.	Parent=Os01t0536433-00
Chr01	irgsp1_rep	five_prime_UTR	19507874	19507880	.	+	.	Parent=Os01t0536433-00
Chr01	irgsp1_rep	CDS	19507881	19508096	.	+	0	Parent=Os01t0536433-00
Chr01	irgsp1_rep	three_prime_UTR	19508097	19508342	.	+	.	Parent=Os01t0536433-00
Chr01	irgsp1_rep	mRNA	19509834	19510988	.	-	.	ID=Os01t0536466-00;Name=Os01t0536466-00;Locus_id=Os01g0536466;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5JLD4 (UniProt);TENOR=Os01t0536466-00
Chr01	irgsp1_rep	CDS	19509834	19510988	.	-	0	Parent=Os01t0536466-00
Chr01	irgsp1_rep	mRNA	19516756	19518873	.	-	.	ID=Os01t0536501-00;Name=Os01t0536501-00;Locus_id=Os01g0536501;Note=Disease resistance protein domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001043262.2 (RefSeq);GO=Biological Process: defense response (GO:0006952),Molecular Function: protein binding (GO:0005515),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),Leucine-rich repeat (IPR001611),NB-ARC (IPR002182);TENOR=Os01t0536501-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	19516756	19518873	.	-	0	Parent=Os01t0536501-00
Chr01	irgsp1_rep	mRNA	19539370	19540140	.	-	.	ID=Os01t0536950-00;Name=Os01t0536950-00;Locus_id=Os01g0536950;Note=Similar to Rust resistance protein rp3-1.;Transcript_evidence=EU951128 (DDBJ);ORF_evidence=Q6PW75 (UniProt);TENOR=Os01t0536950-00;KEGG=Os01t0536950-00
Chr01	irgsp1_rep	CDS	19539370	19540140	.	-	0	Parent=Os01t0536950-00
Chr01	irgsp1_rep	mRNA	19549155	19550345	.	-	.	ID=Os01t0537250-01;Name=Os01t0537250-01;Locus_id=Os01g0537250;Oryzabase Gene Name Synonym(s)=circumsporozoite protein precursor;Note=Protein of unknown function DUF3778 domain containing protein.;Transcript_evidence=AK241517 (DDBJ%2C Best hit);ORF_evidence=A2WR23 (UniProt);InterPro=Protein of unknown function DUF3778 (IPR022256);NIAS_FLcDNA=J065169F22;Oryzabase=23047;TENOR=Os01t0537250-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	19550151	19550345	.	-	.	Parent=Os01t0537250-01
Chr01	irgsp1_rep	CDS	19549359	19550150	.	-	0	Parent=Os01t0537250-01
Chr01	irgsp1_rep	three_prime_UTR	19549155	19549358	.	-	.	Parent=Os01t0537250-01
Chr01	irgsp1_rep	mRNA	19681825	19686308	.	+	.	ID=Os01t0538000-01;Name=Os01t0538000-01;Locus_id=Os01g0538000;Note=Conserved hypothetical protein.;Transcript_evidence=AK061028 (DDBJ%2C Best hit);ORF_evidence=Q8GSX7 (UniProt);NIAS_FLcDNA=006-204-G09;TENOR=Os01t0538000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	19681825	19682198	.	+	.	Parent=Os01t0538000-01
Chr01	irgsp1_rep	five_prime_UTR	19682338	19682450	.	+	.	Parent=Os01t0538000-01
Chr01	irgsp1_rep	five_prime_UTR	19683365	19683439	.	+	.	Parent=Os01t0538000-01
Chr01	irgsp1_rep	five_prime_UTR	19684092	19684278	.	+	.	Parent=Os01t0538000-01
Chr01	irgsp1_rep	CDS	19684279	19684288	.	+	0	Parent=Os01t0538000-01
Chr01	irgsp1_rep	CDS	19684450	19684529	.	+	2	Parent=Os01t0538000-01
Chr01	irgsp1_rep	CDS	19684600	19684887	.	+	0	Parent=Os01t0538000-01
Chr01	irgsp1_rep	three_prime_UTR	19685989	19686308	.	+	.	Parent=Os01t0538000-01
Chr01	irgsp1_rep	mRNA	19681825	19685893	.	+	.	ID=Os01t0538000-02;Name=Os01t0538000-02;Locus_id=Os01g0538000;Note=Similar to cDNA%2C clone: J065161O13%2C full insert sequence.;Transcript_evidence=AK064005 (DDBJ%2C Best hit);ORF_evidence=B7E5N6 (UniProt);NIAS_FLcDNA=001-124-G04;Expression=AK064005;TENOR=Os01t0538000-02;KEGG=Os01t0538000-02
Chr01	irgsp1_rep	five_prime_UTR	19681825	19682198	.	+	.	Parent=Os01t0538000-02
Chr01	irgsp1_rep	five_prime_UTR	19682338	19682450	.	+	.	Parent=Os01t0538000-02
Chr01	irgsp1_rep	five_prime_UTR	19683365	19683439	.	+	.	Parent=Os01t0538000-02
Chr01	irgsp1_rep	five_prime_UTR	19684092	19684112	.	+	.	Parent=Os01t0538000-02
Chr01	irgsp1_rep	CDS	19684113	19684529	.	+	0	Parent=Os01t0538000-02
Chr01	irgsp1_rep	CDS	19684600	19684887	.	+	0	Parent=Os01t0538000-02
Chr01	irgsp1_rep	three_prime_UTR	19685603	19685893	.	+	.	Parent=Os01t0538000-02
Chr01	irgsp1_rep	mRNA	19681851	19686308	.	+	.	ID=Os01t0538000-03;Name=Os01t0538000-03;Locus_id=Os01g0538000;Note=Similar to cDNA%2C clone: J065161O13%2C full insert sequence.;Transcript_evidence=AK072919 (DDBJ%2C Best hit);ORF_evidence=B7E5N6 (UniProt);NIAS_FLcDNA=J023150A20;Expression=AK072919;TENOR=Os01t0538000-03;KEGG=Os01t0538000-03
Chr01	irgsp1_rep	five_prime_UTR	19681851	19682198	.	+	.	Parent=Os01t0538000-03
Chr01	irgsp1_rep	five_prime_UTR	19682338	19682450	.	+	.	Parent=Os01t0538000-03
Chr01	irgsp1_rep	five_prime_UTR	19683365	19683439	.	+	.	Parent=Os01t0538000-03
Chr01	irgsp1_rep	five_prime_UTR	19684092	19684112	.	+	.	Parent=Os01t0538000-03
Chr01	irgsp1_rep	CDS	19684113	19684529	.	+	0	Parent=Os01t0538000-03
Chr01	irgsp1_rep	CDS	19684600	19684887	.	+	0	Parent=Os01t0538000-03
Chr01	irgsp1_rep	three_prime_UTR	19685989	19686308	.	+	.	Parent=Os01t0538000-03
Chr01	irgsp1_rep	mRNA	19682336	19686310	.	+	.	ID=Os01t0538000-04;Name=Os01t0538000-04;Locus_id=Os01g0538000;Note=Similar to cDNA%2C clone: J065161O13%2C full insert sequence.;Transcript_evidence=AK060300 (DDBJ%2C Best hit);ORF_evidence=B7E5N6 (UniProt);NIAS_FLcDNA=001-006-H04;Expression=AK060300;TENOR=Os01t0538000-04;KEGG=Os01t0538000-04
Chr01	irgsp1_rep	five_prime_UTR	19682336	19682450	.	+	.	Parent=Os01t0538000-04
Chr01	irgsp1_rep	five_prime_UTR	19683365	19683439	.	+	.	Parent=Os01t0538000-04
Chr01	irgsp1_rep	five_prime_UTR	19684092	19684112	.	+	.	Parent=Os01t0538000-04
Chr01	irgsp1_rep	CDS	19684113	19684529	.	+	0	Parent=Os01t0538000-04
Chr01	irgsp1_rep	CDS	19684600	19684887	.	+	0	Parent=Os01t0538000-04
Chr01	irgsp1_rep	three_prime_UTR	19685989	19686310	.	+	.	Parent=Os01t0538000-04
Chr01	irgsp1_rep	mRNA	19805233	19805407	.	-	.	ID=Os01t0538650-00;Name=Os01t0538650-00;Locus_id=Os01g0538650;Note=Non-protein coding transcript.;Transcript_evidence=EU945810 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0538650-00
Chr01	irgsp1_rep	exon	19805233	19805407	.	-	.	Parent=Os01t0538650-00
Chr01	irgsp1_rep	mRNA	19824231	19826595	.	+	.	ID=Os01t0539400-01;Name=Os01t0539400-01;Locus_id=Os01g0539400;Note=Hypothetical protein.;Transcript_evidence=AK059524 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-029-C11;Expression=AK059524;TENOR=Os01t0539400-01;KEGG=Os01t0539400-01
Chr01	irgsp1_rep	five_prime_UTR	19824231	19824807	.	+	.	Parent=Os01t0539400-01
Chr01	irgsp1_rep	CDS	19824808	19825104	.	+	0	Parent=Os01t0539400-01
Chr01	irgsp1_rep	three_prime_UTR	19825105	19825116	.	+	.	Parent=Os01t0539400-01
Chr01	irgsp1_rep	three_prime_UTR	19825524	19825713	.	+	.	Parent=Os01t0539400-01
Chr01	irgsp1_rep	three_prime_UTR	19826407	19826595	.	+	.	Parent=Os01t0539400-01
Chr01	irgsp1_rep	mRNA	19824805	19826621	.	+	.	ID=Os01t0539400-02;Name=Os01t0539400-02;Locus_id=Os01g0539400;Note=Hypothetical protein.;Transcript_evidence=AK106137 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-207-G05;Expression=AK106137;TENOR=Os01t0539400-02;KEGG=Os01t0539400-02
Chr01	irgsp1_rep	five_prime_UTR	19824805	19824807	.	+	.	Parent=Os01t0539400-02
Chr01	irgsp1_rep	CDS	19824808	19825104	.	+	0	Parent=Os01t0539400-02
Chr01	irgsp1_rep	three_prime_UTR	19825105	19825116	.	+	.	Parent=Os01t0539400-02
Chr01	irgsp1_rep	three_prime_UTR	19825524	19826621	.	+	.	Parent=Os01t0539400-02
Chr01	irgsp1_rep	mRNA	19845620	19848402	.	-	.	ID=Os01t0539900-01;Name=Os01t0539900-01;Locus_id=Os01g0539900;Note=Conserved hypothetical protein.;Transcript_evidence=AK242029 (DDBJ%2C Best hit);ORF_evidence=B9EXE2 (UniProt);NIAS_FLcDNA=J075115C20;TENOR=Os01t0539900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	19846988	19848402	.	-	.	Parent=Os01t0539900-01
Chr01	irgsp1_rep	CDS	19846418	19846987	.	-	0	Parent=Os01t0539900-01
Chr01	irgsp1_rep	three_prime_UTR	19845620	19846417	.	-	.	Parent=Os01t0539900-01
Chr01	irgsp1_rep	mRNA	19849324	19850690	.	+	.	ID=Os01t0540000-00;Name=Os01t0540000-00;Locus_id=Os01g0540000;Note=Similar to T22C5.14.;Transcript_evidence=BT086321 (DDBJ);ORF_evidence=Q9SFZ0 (UniProt);TENOR=Os01t0540000-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	19849324	19849607	.	+	.	Parent=Os01t0540000-00
Chr01	irgsp1_rep	CDS	19849608	19849661	.	+	0	Parent=Os01t0540000-00
Chr01	irgsp1_rep	CDS	19850569	19850604	.	+	0	Parent=Os01t0540000-00
Chr01	irgsp1_rep	three_prime_UTR	19850605	19850690	.	+	.	Parent=Os01t0540000-00
Chr01	irgsp1_rep	mRNA	19853580	19854168	.	-	.	ID=Os01t0540300-00;Name=Os01t0540300-00;Locus_id=Os01g0540300;Note=Rac-like GTP-binding protein 2.;Transcript_evidence=Q68Y52 (UniProt);ORF_evidence=Q68Y52 (UniProt);GO=Biological Process: small GTPase mediated signal transduction (GO:0007264),Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Small GTPase superfamily%2C Rho type (IPR003578),Small GTP-binding protein domain (IPR005225);TENOR=Os01t0540300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	19854082	19854168	.	-	0	Parent=Os01t0540300-00
Chr01	irgsp1_rep	CDS	19853786	19853873	.	-	0	Parent=Os01t0540300-00
Chr01	irgsp1_rep	CDS	19853580	19853674	.	-	2	Parent=Os01t0540300-00
Chr01	irgsp1_rep	mRNA	19855213	19856657	.	+	.	ID=Os01t0540400-00;Name=Os01t0540400-00;Locus_id=Os01g0540400;Note=Transposase%2C MuDR%2C plant domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9EXE3 (UniProt);InterPro=Transposase%2C MuDR%2C plant (IPR004332);TENOR=Os01t0540400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	19855213	19855259	.	+	0	Parent=Os01t0540400-00
Chr01	irgsp1_rep	CDS	19855405	19856341	.	+	1	Parent=Os01t0540400-00
Chr01	irgsp1_rep	CDS	19856424	19856657	.	+	0	Parent=Os01t0540400-00
Chr01	irgsp1_rep	mRNA	19874748	19881638	.	+	.	ID=Os01t0540800-01;Name=Os01t0540800-01;Locus_id=Os01g0540800;Note=Conserved hypothetical protein.;Transcript_evidence=AK070057 (DDBJ%2C Best hit);ORF_evidence=A2ZU43 (UniProt);NIAS_FLcDNA=J023041K22;TENOR=Os01t0540800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	19874748	19875297	.	+	.	Parent=Os01t0540800-01
Chr01	irgsp1_rep	five_prime_UTR	19875417	19875513	.	+	.	Parent=Os01t0540800-01
Chr01	irgsp1_rep	five_prime_UTR	19875834	19875923	.	+	.	Parent=Os01t0540800-01
Chr01	irgsp1_rep	five_prime_UTR	19876012	19876121	.	+	.	Parent=Os01t0540800-01
Chr01	irgsp1_rep	five_prime_UTR	19876200	19876285	.	+	.	Parent=Os01t0540800-01
Chr01	irgsp1_rep	five_prime_UTR	19876362	19876482	.	+	.	Parent=Os01t0540800-01
Chr01	irgsp1_rep	five_prime_UTR	19877133	19877211	.	+	.	Parent=Os01t0540800-01
Chr01	irgsp1_rep	CDS	19877212	19877241	.	+	0	Parent=Os01t0540800-01
Chr01	irgsp1_rep	CDS	19877353	19877415	.	+	0	Parent=Os01t0540800-01
Chr01	irgsp1_rep	CDS	19877498	19877553	.	+	0	Parent=Os01t0540800-01
Chr01	irgsp1_rep	CDS	19878228	19878262	.	+	1	Parent=Os01t0540800-01
Chr01	irgsp1_rep	CDS	19878588	19878677	.	+	2	Parent=Os01t0540800-01
Chr01	irgsp1_rep	CDS	19878765	19878846	.	+	2	Parent=Os01t0540800-01
Chr01	irgsp1_rep	CDS	19879231	19879294	.	+	1	Parent=Os01t0540800-01
Chr01	irgsp1_rep	three_prime_UTR	19879295	19879320	.	+	.	Parent=Os01t0540800-01
Chr01	irgsp1_rep	three_prime_UTR	19879755	19881638	.	+	.	Parent=Os01t0540800-01
Chr01	irgsp1_rep	mRNA	19882057	19885523	.	+	.	ID=Os01t0541000-01;Name=Os01t0541000-01;Locus_id=Os01g0541000;Note=Transcriptional factor B3 family protein.;Transcript_evidence=AK059464 (DDBJ%2C Best hit);ORF_evidence=A2ZU44 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=001-028-D04;Expression=AK059464;TENOR=Os01t0541000-01;KEGG=Os01t0541000-01
Chr01	irgsp1_rep	five_prime_UTR	19882057	19882114	.	+	.	Parent=Os01t0541000-01
Chr01	irgsp1_rep	five_prime_UTR	19883000	19883059	.	+	.	Parent=Os01t0541000-01
Chr01	irgsp1_rep	five_prime_UTR	19884001	19884059	.	+	.	Parent=Os01t0541000-01
Chr01	irgsp1_rep	five_prime_UTR	19884144	19884253	.	+	.	Parent=Os01t0541000-01
Chr01	irgsp1_rep	CDS	19884254	19884455	.	+	0	Parent=Os01t0541000-01
Chr01	irgsp1_rep	CDS	19884611	19884700	.	+	2	Parent=Os01t0541000-01
Chr01	irgsp1_rep	CDS	19884781	19884944	.	+	2	Parent=Os01t0541000-01
Chr01	irgsp1_rep	CDS	19885014	19885064	.	+	0	Parent=Os01t0541000-01
Chr01	irgsp1_rep	three_prime_UTR	19885065	19885523	.	+	.	Parent=Os01t0541000-01
Chr01	irgsp1_rep	mRNA	19911224	19914280	.	-	.	ID=Os01t0541600-01;Name=Os01t0541600-01;Locus_id=Os01g0541600;Note=RNAse P%2C Rpr2/Rpp21 subunit domain containing protein.;Transcript_evidence=AK287519 (DDBJ%2C Best hit);ORF_evidence=NP_001043269.1 (RefSeq);InterPro=RNAse P%2C Rpr2/Rpp21 subunit (IPR007175);NIAS_FLcDNA=J053042D15;TENOR=Os01t0541600-01;KEGG=Os01t0541600-01
Chr01	irgsp1_rep	five_prime_UTR	19914159	19914280	.	-	.	Parent=Os01t0541600-01
Chr01	irgsp1_rep	CDS	19913890	19914158	.	-	0	Parent=Os01t0541600-01
Chr01	irgsp1_rep	CDS	19911407	19912319	.	-	1	Parent=Os01t0541600-01
Chr01	irgsp1_rep	three_prime_UTR	19911224	19911406	.	-	.	Parent=Os01t0541600-01
Chr01	irgsp1_rep	mRNA	19959667	19961939	.	+	.	ID=Os01t0541800-01;Name=Os01t0541800-01;Locus_id=Os01g0541800;CGSNL Gene Symbol=SWEET2A;CGSNL Gene Name=SWEET2A;Oryzabase Gene Symbol Synonym(s)=OsSWEET2a%2C SWEET2a;Note=MtN3 and saliva related transmembrane protein family protein.;Transcript_evidence=AK066226 (DDBJ%2C Best hit),AK104143 (DDBJ%2C Best hit),AK104255 (DDBJ%2C Best hit);ORF_evidence=Q5JJY5 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=RAG1-activating protein-1-related (IPR004316);NIAS_FLcDNA=J013057K13,006-205-G10,006-309-D11;Oryzabase=9090;TENOR=Os01t0541800-01
Chr01	irgsp1_rep	five_prime_UTR	19959667	19959816	.	+	.	Parent=Os01t0541800-01
Chr01	irgsp1_rep	CDS	19959817	19959904	.	+	0	Parent=Os01t0541800-01
Chr01	irgsp1_rep	CDS	19960099	19960135	.	+	2	Parent=Os01t0541800-01
Chr01	irgsp1_rep	CDS	19960260	19960476	.	+	1	Parent=Os01t0541800-01
Chr01	irgsp1_rep	CDS	19960953	19961111	.	+	0	Parent=Os01t0541800-01
Chr01	irgsp1_rep	CDS	19961287	19961406	.	+	0	Parent=Os01t0541800-01
Chr01	irgsp1_rep	CDS	19961499	19961609	.	+	0	Parent=Os01t0541800-01
Chr01	irgsp1_rep	three_prime_UTR	19961610	19961939	.	+	.	Parent=Os01t0541800-01
Chr01	irgsp1_rep	mRNA	19962944	19970079	.	-	.	ID=Os01t0541900-01;Name=Os01t0541900-01;Locus_id=Os01g0541900;Oryzabase Gene Symbol Synonym(s)=OsPP2C04%2C PP2C04%2C OsPP2C4%2C PP2C4%2C OsPP8;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C04%2C protein phosphatase 2C 04%2C protein phosphatase 2C4%2C protein phosphatase 2C 4%2C protein phosphatase 8;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK069784 (DDBJ%2C Best hit);ORF_evidence=NP_850336.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein phosphatase 2C-like (IPR001932),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023030I11;Oryzabase=17883;Expression=AK069784;TENOR=Os01t0541900-01;KEGG=Os01t0541900-01
Chr01	irgsp1_rep	five_prime_UTR	19969949	19970079	.	-	.	Parent=Os01t0541900-01
Chr01	irgsp1_rep	CDS	19969828	19969948	.	-	0	Parent=Os01t0541900-01
Chr01	irgsp1_rep	CDS	19969622	19969754	.	-	2	Parent=Os01t0541900-01
Chr01	irgsp1_rep	CDS	19968955	19969121	.	-	1	Parent=Os01t0541900-01
Chr01	irgsp1_rep	CDS	19967845	19967912	.	-	2	Parent=Os01t0541900-01
Chr01	irgsp1_rep	CDS	19967534	19967757	.	-	0	Parent=Os01t0541900-01
Chr01	irgsp1_rep	CDS	19966511	19966562	.	-	1	Parent=Os01t0541900-01
Chr01	irgsp1_rep	CDS	19965549	19966071	.	-	0	Parent=Os01t0541900-01
Chr01	irgsp1_rep	CDS	19965405	19965474	.	-	2	Parent=Os01t0541900-01
Chr01	irgsp1_rep	CDS	19965110	19965329	.	-	1	Parent=Os01t0541900-01
Chr01	irgsp1_rep	CDS	19964918	19965022	.	-	0	Parent=Os01t0541900-01
Chr01	irgsp1_rep	CDS	19964197	19964292	.	-	0	Parent=Os01t0541900-01
Chr01	irgsp1_rep	CDS	19963237	19963431	.	-	0	Parent=Os01t0541900-01
Chr01	irgsp1_rep	three_prime_UTR	19962944	19963236	.	-	.	Parent=Os01t0541900-01
Chr01	irgsp1_rep	mRNA	19972083	19973030	.	+	.	ID=Os01t0542000-00;Name=Os01t0542000-00;Locus_id=Os01g0542000;Note=Similar to DNA-damage-repair/toleration protein DRT102.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001151173.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975);InterPro=Ribose/galactose isomerase (IPR003500),Cupin%2C RmlC-type (IPR011051),DNA-damage-repair/toleration protein%2C DRT102 (IPR012100),Cupin 2%2C conserved barrel (IPR013096),RmlC-like jelly roll fold (IPR014710);Oryzabase=22684;TENOR=Os01t0542000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	19972083	19973030	.	+	0	Parent=Os01t0542000-00
Chr01	irgsp1_rep	mRNA	19973271	19977472	.	+	.	ID=Os01t0542100-01;Name=Os01t0542100-01;Locus_id=Os01g0542100;Note=Conserved hypothetical protein.;Transcript_evidence=AK288845 (DDBJ%2C Best hit);ORF_evidence=Q5JJY3 (UniProt);NIAS_FLcDNA=J090075D02;TENOR=Os01t0542100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	19973271	19977226	.	+	.	Parent=Os01t0542100-01
Chr01	irgsp1_rep	CDS	19977227	19977472	.	+	0	Parent=Os01t0542100-01
Chr01	irgsp1_rep	mRNA	20034162	20035006	.	+	.	ID=Os01t0542700-01;Name=Os01t0542700-01;Locus_id=Os01g0542700;CGSNL Gene Symbol=BZIP4;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 4;Oryzabase Gene Symbol Synonym(s)=OsbZIP04%2C OsbZIP4;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 04;Note=bZIP transcription factor%2C bZIP-1 domain containing protein.;Transcript_evidence=AK110526 (DDBJ%2C Best hit);ORF_evidence=A2WR40 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);NIAS_FLcDNA=002-167-H10;Oryzabase=10095;Expression=AK110526;TENOR=Os01t0542700-01;KEGG=Os01t0542700-01
Chr01	irgsp1_rep	five_prime_UTR	20034162	20034243	.	+	.	Parent=Os01t0542700-01
Chr01	irgsp1_rep	CDS	20034244	20034792	.	+	0	Parent=Os01t0542700-01
Chr01	irgsp1_rep	three_prime_UTR	20034793	20035006	.	+	.	Parent=Os01t0542700-01
Chr01	irgsp1_rep	mRNA	20041617	20044749	.	+	.	ID=Os01t0543000-02;Name=Os01t0543000-02;Locus_id=Os01g0543000;Note=Hypothetical gene.;Transcript_evidence=AK121715 (DDBJ%2C Best hit),AK071596 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033079F24,J023104G14;TENOR=Os01t0543000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	20041617	20041618	.	+	.	Parent=Os01t0543000-02
Chr01	irgsp1_rep	CDS	20041619	20041915	.	+	0	Parent=Os01t0543000-02
Chr01	irgsp1_rep	three_prime_UTR	20041916	20044749	.	+	.	Parent=Os01t0543000-02
Chr01	irgsp1_rep	mRNA	20061961	20066455	.	+	.	ID=Os01t0543100-01;Name=Os01t0543100-01;Locus_id=Os01g0543100;Oryzabase Gene Symbol Synonym(s)=prx17;Oryzabase Gene Name Synonym(s)=class III peroxidase 17;Note=Similar to Peroxidase 72 precursor (EC 1.11.1.7) (Atperox P72) (PRXR8) (ATP6a).;Transcript_evidence=AK105363 (DDBJ%2C Best hit);ORF_evidence=NP_201440.1 (RefSeq);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=001-119-E09;Oryzabase=14544;Expression=AK105363;TENOR=Os01t0543100-01;KEGG=Os01t0543100-01 (EC:1.11.1.7)
Chr01	irgsp1_rep	five_prime_UTR	20061961	20062027	.	+	.	Parent=Os01t0543100-01
Chr01	irgsp1_rep	CDS	20062028	20062270	.	+	0	Parent=Os01t0543100-01
Chr01	irgsp1_rep	CDS	20062413	20062604	.	+	0	Parent=Os01t0543100-01
Chr01	irgsp1_rep	CDS	20064106	20064271	.	+	0	Parent=Os01t0543100-01
Chr01	irgsp1_rep	CDS	20065733	20066154	.	+	2	Parent=Os01t0543100-01
Chr01	irgsp1_rep	three_prime_UTR	20066155	20066455	.	+	.	Parent=Os01t0543100-01
Chr01	irgsp1_rep	mRNA	20101102	20103606	.	+	.	ID=Os01t0543400-00;Name=Os01t0543400-00;Locus_id=Os01g0543400;Note=Hypothetical conserved gene.;Transcript_evidence=AK367510 (DDBJ);ORF_evidence=NP_001042386.1 (RefSeq);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Esterase%2C SGNH hydrolase-type%2C subgroup (IPR013831);TENOR=Os01t0543400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	20101102	20101293	.	+	.	Parent=Os01t0543400-00
Chr01	irgsp1_rep	CDS	20101294	20101451	.	+	0	Parent=Os01t0543400-00
Chr01	irgsp1_rep	CDS	20101575	20101651	.	+	1	Parent=Os01t0543400-00
Chr01	irgsp1_rep	CDS	20102142	20102284	.	+	2	Parent=Os01t0543400-00
Chr01	irgsp1_rep	three_prime_UTR	20102285	20102301	.	+	.	Parent=Os01t0543400-00
Chr01	irgsp1_rep	three_prime_UTR	20103408	20103606	.	+	.	Parent=Os01t0543400-00
Chr01	irgsp1_rep	mRNA	20124194	20126848	.	+	.	ID=Os01t0543600-01;Name=Os01t0543600-01;Locus_id=Os01g0543600;Note=CytoChrome P450 domain containing protein.;Transcript_evidence=AK240728 (DDBJ%2C Best hit);ORF_evidence=A2ZU59 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);NIAS_FLcDNA=J043029C11;TENOR=Os01t0543600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	20124194	20125568	.	+	.	Parent=Os01t0543600-01
Chr01	irgsp1_rep	CDS	20125569	20126120	.	+	0	Parent=Os01t0543600-01
Chr01	irgsp1_rep	three_prime_UTR	20126121	20126848	.	+	.	Parent=Os01t0543600-01
Chr01	irgsp1_rep	mRNA	20124383	20126778	.	-	.	ID=Os01t0543800-00;Name=Os01t0543800-00;Locus_id=Os01g0543800;Note=Hypothetical protein.;Transcript_evidence=tplb0042b08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0543800-00
Chr01	irgsp1_rep	five_prime_UTR	20126635	20126778	.	-	.	Parent=Os01t0543800-00
Chr01	irgsp1_rep	CDS	20126341	20126634	.	-	0	Parent=Os01t0543800-00
Chr01	irgsp1_rep	three_prime_UTR	20126076	20126340	.	-	.	Parent=Os01t0543800-00
Chr01	irgsp1_rep	three_prime_UTR	20125595	20125985	.	-	.	Parent=Os01t0543800-00
Chr01	irgsp1_rep	three_prime_UTR	20124383	20124777	.	-	.	Parent=Os01t0543800-00
Chr01	irgsp1_rep	mRNA	20153482	20156262	.	+	.	ID=Os01t0544200-01;Name=Os01t0544200-01;Locus_id=Os01g0544200;Note=Similar to P450.;Transcript_evidence=AK100062 (DDBJ%2C Best hit);ORF_evidence=Q8S9E5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);NIAS_FLcDNA=J013160F05;Expression=AK100062;TENOR=Os01t0544200-01;KEGG=Os01t0544200-01
Chr01	irgsp1_rep	five_prime_UTR	20153482	20153499	.	+	.	Parent=Os01t0544200-01
Chr01	irgsp1_rep	CDS	20153500	20154015	.	+	0	Parent=Os01t0544200-01
Chr01	irgsp1_rep	CDS	20154946	20155386	.	+	0	Parent=Os01t0544200-01
Chr01	irgsp1_rep	CDS	20155479	20155604	.	+	0	Parent=Os01t0544200-01
Chr01	irgsp1_rep	three_prime_UTR	20155605	20156262	.	+	.	Parent=Os01t0544200-01
Chr01	irgsp1_rep	mRNA	20153482	20156277	.	+	.	ID=Os01t0544200-02;Name=Os01t0544200-02;Locus_id=Os01g0544200;Note=Similar to Bx2-like protein.;Transcript_evidence=AK120213 (DDBJ%2C Best hit);ORF_evidence=Q5QIS9 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);NIAS_FLcDNA=J013039G14;Expression=AK120213;TENOR=Os01t0544200-02;KEGG=Os01t0544200-02
Chr01	irgsp1_rep	five_prime_UTR	20153482	20153499	.	+	.	Parent=Os01t0544200-02
Chr01	irgsp1_rep	CDS	20153500	20154102	.	+	0	Parent=Os01t0544200-02
Chr01	irgsp1_rep	three_prime_UTR	20154103	20155386	.	+	.	Parent=Os01t0544200-02
Chr01	irgsp1_rep	three_prime_UTR	20155479	20156277	.	+	.	Parent=Os01t0544200-02
Chr01	irgsp1_rep	mRNA	20153485	20156262	.	+	.	ID=Os01t0544200-03;Name=Os01t0544200-03;Locus_id=Os01g0544200;Note=Similar to P450.;Transcript_evidence=AK061866 (DDBJ%2C Best hit);ORF_evidence=Q8S9E5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);NIAS_FLcDNA=001-040-H09;TENOR=Os01t0544200-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	20153485	20153499	.	+	.	Parent=Os01t0544200-03
Chr01	irgsp1_rep	CDS	20153500	20154015	.	+	0	Parent=Os01t0544200-03
Chr01	irgsp1_rep	CDS	20154946	20155081	.	+	0	Parent=Os01t0544200-03
Chr01	irgsp1_rep	CDS	20155207	20155235	.	+	2	Parent=Os01t0544200-03
Chr01	irgsp1_rep	three_prime_UTR	20155236	20155386	.	+	.	Parent=Os01t0544200-03
Chr01	irgsp1_rep	three_prime_UTR	20155479	20156262	.	+	.	Parent=Os01t0544200-03
Chr01	irgsp1_rep	mRNA	20153653	20156094	.	-	.	ID=Os01t0544325-00;Name=Os01t0544325-00;Locus_id=Os01g0544325;Note=Non-protein coding transcript.;Transcript_evidence=tplb0042b08 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os01t0544325-00
Chr01	irgsp1_rep	exon	20155499	20156094	.	-	.	Parent=Os01t0544325-00
Chr01	irgsp1_rep	exon	20154963	20155407	.	-	.	Parent=Os01t0544325-00
Chr01	irgsp1_rep	exon	20153653	20154027	.	-	.	Parent=Os01t0544325-00
Chr01	irgsp1_rep	mRNA	20192025	20196937	.	+	.	ID=Os01t0544450-01;Name=Os01t0544450-01;Locus_id=Os01g0544450;CGSNL Gene Symbol=MCM4;CGSNL Gene Name=MINI-CHROMOSOME MAINTENANCE PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OsMCM4;Note=Similar to DNA replication licensing factor mcm4.;Transcript_evidence=AK288475 (DDBJ%2C Best hit);ORF_evidence=NP_001147978.1 (RefSeq);GO=Biological Process: DNA replication (GO:0006260),Biological Process: DNA-dependent DNA replication initiation (GO:0006270),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=Mini-Chromosome maintenance%2C DNA-dependent ATPase (IPR001208),ATPase%2C AAA+ type%2C core (IPR003593),Mini-Chromosome maintenance complex protein 4 (IPR008047),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),Mini-Chromosome maintenance%2C conserved site (IPR018525);NIAS_FLcDNA=J090038A13;Oryzabase=9200;TENOR=Os01t0544450-01;KEGG=Os01t0544450-01
Chr01	irgsp1_rep	five_prime_UTR	20192025	20192049	.	+	.	Parent=Os01t0544450-01
Chr01	irgsp1_rep	CDS	20192050	20192101	.	+	0	Parent=Os01t0544450-01
Chr01	irgsp1_rep	CDS	20192181	20192909	.	+	2	Parent=Os01t0544450-01
Chr01	irgsp1_rep	CDS	20192993	20193121	.	+	2	Parent=Os01t0544450-01
Chr01	irgsp1_rep	CDS	20193747	20193828	.	+	2	Parent=Os01t0544450-01
Chr01	irgsp1_rep	CDS	20193924	20194056	.	+	1	Parent=Os01t0544450-01
Chr01	irgsp1_rep	CDS	20194159	20194230	.	+	0	Parent=Os01t0544450-01
Chr01	irgsp1_rep	CDS	20194341	20194463	.	+	0	Parent=Os01t0544450-01
Chr01	irgsp1_rep	CDS	20194541	20194654	.	+	0	Parent=Os01t0544450-01
Chr01	irgsp1_rep	CDS	20194728	20194940	.	+	0	Parent=Os01t0544450-01
Chr01	irgsp1_rep	CDS	20195034	20195132	.	+	0	Parent=Os01t0544450-01
Chr01	irgsp1_rep	CDS	20195218	20195378	.	+	0	Parent=Os01t0544450-01
Chr01	irgsp1_rep	CDS	20195479	20195575	.	+	1	Parent=Os01t0544450-01
Chr01	irgsp1_rep	CDS	20195718	20195879	.	+	0	Parent=Os01t0544450-01
Chr01	irgsp1_rep	CDS	20195958	20196038	.	+	0	Parent=Os01t0544450-01
Chr01	irgsp1_rep	CDS	20196132	20196210	.	+	0	Parent=Os01t0544450-01
Chr01	irgsp1_rep	CDS	20196304	20196440	.	+	2	Parent=Os01t0544450-01
Chr01	irgsp1_rep	CDS	20196528	20196578	.	+	0	Parent=Os01t0544450-01
Chr01	irgsp1_rep	CDS	20196666	20196740	.	+	0	Parent=Os01t0544450-01
Chr01	irgsp1_rep	three_prime_UTR	20196741	20196937	.	+	.	Parent=Os01t0544450-01
Chr01	irgsp1_rep	mRNA	20197279	20199817	.	+	.	ID=Os01t0544700-01;Name=Os01t0544700-01;Locus_id=Os01g0544700;Note=Hypothetical conserved gene.;Transcript_evidence=AK318584 (DDBJ%2C Best hit);ORF_evidence=B9EWA7 (UniProt);NIAS_FLcDNA=J100007J07;TENOR=Os01t0544700-01;KEGG=Os01t0544700-01
Chr01	irgsp1_rep	five_prime_UTR	20197279	20197762	.	+	.	Parent=Os01t0544700-01
Chr01	irgsp1_rep	five_prime_UTR	20197845	20198419	.	+	.	Parent=Os01t0544700-01
Chr01	irgsp1_rep	CDS	20198420	20198518	.	+	0	Parent=Os01t0544700-01
Chr01	irgsp1_rep	CDS	20199582	20199647	.	+	0	Parent=Os01t0544700-01
Chr01	irgsp1_rep	three_prime_UTR	20199648	20199817	.	+	.	Parent=Os01t0544700-01
Chr01	irgsp1_rep	mRNA	20197318	20199912	.	+	.	ID=Os01t0544700-02;Name=Os01t0544700-02;Locus_id=Os01g0544700;Note=Hypothetical conserved gene.;Transcript_evidence=AK065963 (DDBJ%2C Best hit);ORF_evidence=B9EWA7 (UniProt);NIAS_FLcDNA=J013047C21;Expression=AK065963;TENOR=Os01t0544700-02;KEGG=Os01t0544700-02
Chr01	irgsp1_rep	five_prime_UTR	20197318	20198419	.	+	.	Parent=Os01t0544700-02
Chr01	irgsp1_rep	CDS	20198420	20198518	.	+	0	Parent=Os01t0544700-02
Chr01	irgsp1_rep	CDS	20199582	20199647	.	+	0	Parent=Os01t0544700-02
Chr01	irgsp1_rep	three_prime_UTR	20199648	20199912	.	+	.	Parent=Os01t0544700-02
Chr01	irgsp1_rep	mRNA	20240548	20241256	.	-	.	ID=Os01t0545100-01;Name=Os01t0545100-01;Locus_id=Os01g0545100;Oryzabase Gene Symbol Synonym(s)=OsMYB86-L1;Note=Conserved hypothetical protein.;Transcript_evidence=AK065915 (DDBJ%2C Best hit);ORF_evidence=A2ZU62 (UniProt);NIAS_FLcDNA=J013043J17;Oryzabase=19908;TENOR=Os01t0545100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	20240891	20241256	.	-	0	Parent=Os01t0545100-01
Chr01	irgsp1_rep	three_prime_UTR	20240548	20240890	.	-	.	Parent=Os01t0545100-01
Chr01	irgsp1_rep	mRNA	20256175	20260730	.	-	.	ID=Os01t0545500-01;Name=Os01t0545500-01;Locus_id=Os01g0545500;CGSNL Gene Symbol=RLCK36;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 36;Oryzabase Gene Symbol Synonym(s)=OsRLCK36;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 36;Note=Hypothetical conserved gene.;Transcript_evidence=AK243250 (DDBJ%2C Best hit);ORF_evidence=Q2R1L0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Gnk2-homologous domain (IPR002902),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J100047P11;Oryzabase=18753;TENOR=Os01t0545500-01;KEGG=Os01t0545500-01
Chr01	irgsp1_rep	five_prime_UTR	20260719	20260730	.	-	.	Parent=Os01t0545500-01
Chr01	irgsp1_rep	CDS	20259946	20260718	.	-	0	Parent=Os01t0545500-01
Chr01	irgsp1_rep	CDS	20258272	20258399	.	-	1	Parent=Os01t0545500-01
Chr01	irgsp1_rep	CDS	20258053	20258175	.	-	2	Parent=Os01t0545500-01
Chr01	irgsp1_rep	CDS	20257800	20257957	.	-	2	Parent=Os01t0545500-01
Chr01	irgsp1_rep	CDS	20257372	20257582	.	-	0	Parent=Os01t0545500-01
Chr01	irgsp1_rep	CDS	20257051	20257288	.	-	2	Parent=Os01t0545500-01
Chr01	irgsp1_rep	CDS	20256795	20256945	.	-	1	Parent=Os01t0545500-01
Chr01	irgsp1_rep	CDS	20256262	20256564	.	-	0	Parent=Os01t0545500-01
Chr01	irgsp1_rep	three_prime_UTR	20256175	20256261	.	-	.	Parent=Os01t0545500-01
Chr01	irgsp1_rep	mRNA	20256217	20260695	.	+	.	ID=Os01t0545550-00;Name=Os01t0545550-00;Locus_id=Os01g0545550;Note=Hypothetical protein.;Transcript_evidence=tplb0040j01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0545550-00
Chr01	irgsp1_rep	five_prime_UTR	20256217	20256527	.	+	.	Parent=Os01t0545550-00
Chr01	irgsp1_rep	five_prime_UTR	20256754	20256956	.	+	.	Parent=Os01t0545550-00
Chr01	irgsp1_rep	five_prime_UTR	20257054	20257298	.	+	.	Parent=Os01t0545550-00
Chr01	irgsp1_rep	five_prime_UTR	20257383	20257592	.	+	.	Parent=Os01t0545550-00
Chr01	irgsp1_rep	five_prime_UTR	20257811	20258133	.	+	.	Parent=Os01t0545550-00
Chr01	irgsp1_rep	five_prime_UTR	20259931	20260286	.	+	.	Parent=Os01t0545550-00
Chr01	irgsp1_rep	CDS	20260287	20260695	.	+	0	Parent=Os01t0545550-00
Chr01	irgsp1_rep	mRNA	20276964	20278121	.	-	.	ID=Os01t0545800-00;Name=Os01t0545800-00;Locus_id=Os01g0545800;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2ZU66 (UniProt);TENOR=Os01t0545800-00
Chr01	irgsp1_rep	CDS	20277875	20278121	.	-	0	Parent=Os01t0545800-00
Chr01	irgsp1_rep	CDS	20277672	20277851	.	-	2	Parent=Os01t0545800-00
Chr01	irgsp1_rep	CDS	20277388	20277516	.	-	2	Parent=Os01t0545800-00
Chr01	irgsp1_rep	CDS	20276964	20277076	.	-	2	Parent=Os01t0545800-00
Chr01	irgsp1_rep	mRNA	20280804	20282813	.	+	.	ID=Os01t0545900-00;Name=Os01t0545900-00;Locus_id=Os01g0545900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=tplb0002o07 (Wheat FLcDNA);ORF_evidence=NP_001043280.1 (RefSeq);InterPro=Pentatricopeptide repeat (IPR002885);TENOR=Os01t0545900-00;KEGG=Os01t0545900-00
Chr01	irgsp1_rep	CDS	20280804	20282564	.	+	0	Parent=Os01t0545900-00
Chr01	irgsp1_rep	three_prime_UTR	20282565	20282813	.	+	.	Parent=Os01t0545900-00
Chr01	irgsp1_rep	mRNA	20284942	20287666	.	+	.	ID=Os01t0546000-01;Name=Os01t0546000-01;Locus_id=Os01g0546000;Oryzabase Gene Symbol Synonym(s)=OsLysM-RLK3%2C LysM-RLK3%2C OsLYK1%2C LYK1;Oryzabase Gene Name Synonym(s)=LysM receptor-like kinase 3%2C LysM-type receptor-like kinase1;Note=Similar to predicted protein.;Transcript_evidence=AK241340 (DDBJ%2C Best hit);ORF_evidence=D3KU53 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: cell wall macromolecule catabolic process (GO:0016998),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Peptidoglycan-binding Lysin subgroup (IPR002482),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Peptidoglycan-binding lysin domain (IPR018392),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J065146O13;Oryzabase=10922;TENOR=Os01t0546000-01;KEGG=Os01t0546000-01 (EC:2.7.11.1)
Chr01	irgsp1_rep	CDS	20284942	20285110	.	+	0	Parent=Os01t0546000-01
Chr01	irgsp1_rep	CDS	20285408	20285611	.	+	2	Parent=Os01t0546000-01
Chr01	irgsp1_rep	CDS	20285689	20285828	.	+	2	Parent=Os01t0546000-01
Chr01	irgsp1_rep	CDS	20285925	20286014	.	+	0	Parent=Os01t0546000-01
Chr01	irgsp1_rep	CDS	20286139	20286244	.	+	0	Parent=Os01t0546000-01
Chr01	irgsp1_rep	CDS	20286434	20286763	.	+	2	Parent=Os01t0546000-01
Chr01	irgsp1_rep	CDS	20286838	20286860	.	+	2	Parent=Os01t0546000-01
Chr01	irgsp1_rep	three_prime_UTR	20286861	20286976	.	+	.	Parent=Os01t0546000-01
Chr01	irgsp1_rep	three_prime_UTR	20287113	20287211	.	+	.	Parent=Os01t0546000-01
Chr01	irgsp1_rep	three_prime_UTR	20287301	20287666	.	+	.	Parent=Os01t0546000-01
Chr01	irgsp1_rep	mRNA	20287702	20290661	.	-	.	ID=Os01t0546100-01;Name=Os01t0546100-01;Locus_id=Os01g0546100;CGSNL Gene Symbol=5NG4;Oryzabase Gene Symbol Synonym(s)=Os5NG4;Note=Similar to nodulin-like protein.;Transcript_evidence=AK243226 (DDBJ%2C Best hit);ORF_evidence=NP_001151548.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=J100044E11;Oryzabase=23435;TENOR=Os01t0546100-01;KEGG=Os01t0546100-01
Chr01	irgsp1_rep	five_prime_UTR	20290661	20290661	.	-	.	Parent=Os01t0546100-01
Chr01	irgsp1_rep	CDS	20290458	20290660	.	-	0	Parent=Os01t0546100-01
Chr01	irgsp1_rep	CDS	20290302	20290364	.	-	1	Parent=Os01t0546100-01
Chr01	irgsp1_rep	CDS	20289672	20289788	.	-	1	Parent=Os01t0546100-01
Chr01	irgsp1_rep	CDS	20288972	20289221	.	-	1	Parent=Os01t0546100-01
Chr01	irgsp1_rep	CDS	20288718	20288876	.	-	0	Parent=Os01t0546100-01
Chr01	irgsp1_rep	CDS	20288087	20288238	.	-	0	Parent=Os01t0546100-01
Chr01	irgsp1_rep	CDS	20287855	20287975	.	-	1	Parent=Os01t0546100-01
Chr01	irgsp1_rep	three_prime_UTR	20287702	20287854	.	-	.	Parent=Os01t0546100-01
Chr01	irgsp1_rep	mRNA	20292561	20292886	.	+	.	ID=Os01t0546250-00;Name=Os01t0546250-00;Locus_id=Os01g0546250;Note=Similar to Glycine-rich protein 2b.;Transcript_evidence=EU947803 (DDBJ);ORF_evidence=B6TP60 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677);InterPro=Cold-shock protein%2C DNA-binding (IPR002059),Cold shock protein (IPR011129),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);TENOR=Os01t0546250-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	20292561	20292589	.	+	.	Parent=Os01t0546250-00
Chr01	irgsp1_rep	CDS	20292590	20292886	.	+	0	Parent=Os01t0546250-00
Chr01	irgsp1_rep	mRNA	20299783	20302467	.	-	.	ID=Os01t0546400-01;Name=Os01t0546400-01;Locus_id=Os01g0546400;Oryzabase Gene Symbol Synonym(s)=FCO6;Oryzabase Gene Name Synonym(s)=Functioning in Cesium Over-transport 6;Note=Protein of unknown function DUF6%2C transmembrane domain containing protein.;Transcript_evidence=AK058673 (DDBJ%2C Best hit);ORF_evidence=NP_001151548.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=001-018-H05;Oryzabase=21692;Expression=AK058673;TENOR=Os01t0546400-01;KEGG=Os01t0546400-01
Chr01	irgsp1_rep	five_prime_UTR	20302457	20302467	.	-	.	Parent=Os01t0546400-01
Chr01	irgsp1_rep	CDS	20302284	20302456	.	-	0	Parent=Os01t0546400-01
Chr01	irgsp1_rep	CDS	20302145	20302207	.	-	1	Parent=Os01t0546400-01
Chr01	irgsp1_rep	CDS	20301429	20301545	.	-	1	Parent=Os01t0546400-01
Chr01	irgsp1_rep	CDS	20301022	20301271	.	-	1	Parent=Os01t0546400-01
Chr01	irgsp1_rep	CDS	20300781	20300939	.	-	0	Parent=Os01t0546400-01
Chr01	irgsp1_rep	CDS	20300166	20300317	.	-	0	Parent=Os01t0546400-01
Chr01	irgsp1_rep	CDS	20299925	20300045	.	-	1	Parent=Os01t0546400-01
Chr01	irgsp1_rep	three_prime_UTR	20299783	20299924	.	-	.	Parent=Os01t0546400-01
Chr01	irgsp1_rep	mRNA	20312947	20314161	.	-	.	ID=Os01t0546500-01;Name=Os01t0546500-01;Locus_id=Os01g0546500;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK069340 (DDBJ%2C Best hit);ORF_evidence=F2DE83 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J023013K01;Expression=AK069340;TENOR=Os01t0546500-01;KEGG=Os01t0546500-01
Chr01	irgsp1_rep	five_prime_UTR	20314143	20314161	.	-	.	Parent=Os01t0546500-01
Chr01	irgsp1_rep	CDS	20313114	20314142	.	-	0	Parent=Os01t0546500-01
Chr01	irgsp1_rep	three_prime_UTR	20312947	20313113	.	-	.	Parent=Os01t0546500-01
Chr01	irgsp1_rep	mRNA	20314316	20316106	.	+	.	ID=Os01t0546700-00;Name=Os01t0546700-00;Locus_id=Os01g0546700;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A2ZU74 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os01t0546700-00;KEGG=Os01t0546700-00
Chr01	irgsp1_rep	CDS	20314316	20316106	.	+	0	Parent=Os01t0546700-00
Chr01	irgsp1_rep	mRNA	20317878	20319355	.	-	.	ID=Os01t0546800-01;Name=Os01t0546800-01;Locus_id=Os01g0546800;RAP-DB Gene Symbol Synonym(s)=OsPSE1%2C OsPLL1;RAP-DB Gene Name Synonym(s)=premature senescence1%2C Pectate lyase-like 1;CGSNL Gene Symbol=PSE1;CGSNL Gene Name=PREMATURE SENESCENCE 1;Oryzabase Gene Symbol Synonym(s)=OsPSE1%2C OsPLL1%2C PLL1;Oryzabase Gene Name Synonym(s)=premature senescence 1%2C premature senescence1%2C Pectate lyase-like 1;Note=Pectate lyase-like protein%2C Leaf senescence;Transcript_evidence=AK066636;ORF_evidence=Q8RYR4;InterPro=Pectin lyase fold (IPR012334),Pectin lyase fold/virulence factor (IPR011050),AmbAllergen (IPR018082),Pectate lyase (IPR002022);NIAS_FLcDNA=J013073B06;Manual Curation=June 28%2C 2018;Literature_PMID=29943288,23624440;Oryzabase=21859;Expression=AK066636;TENOR=Os01t0546800-01;KEGG=Os01t0546800-01 (EC:4.2.2.2)
Chr01	irgsp1_rep	five_prime_UTR	20319131	20319355	.	-	.	Parent=Os01t0546800-01
Chr01	irgsp1_rep	CDS	20318036	20319130	.	-	0	Parent=Os01t0546800-01
Chr01	irgsp1_rep	three_prime_UTR	20317878	20318035	.	-	.	Parent=Os01t0546800-01
Chr01	irgsp1_rep	mRNA	20322698	20326374	.	+	.	ID=Os01t0546900-01;Name=Os01t0546900-01;Locus_id=Os01g0546900;Oryzabase Gene Symbol Synonym(s)=JMJ709;Oryzabase Gene Name Synonym(s)=Jumonji 709;Note=Similar to transcription factor jumonji (jmjC) domain-containing protein.;Transcript_evidence=AK073801 (DDBJ%2C Best hit);ORF_evidence=NP_201113.2 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Transcription factor jumonji/aspartyl beta-hydroxylase (IPR003347),Transcription factor jumonji (IPR013129);NIAS_FLcDNA=J033067F23;Oryzabase=15220;TENOR=Os01t0546900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	20322698	20322698	.	+	.	Parent=Os01t0546900-01
Chr01	irgsp1_rep	CDS	20322699	20322821	.	+	0	Parent=Os01t0546900-01
Chr01	irgsp1_rep	CDS	20323339	20323501	.	+	0	Parent=Os01t0546900-01
Chr01	irgsp1_rep	CDS	20323660	20323777	.	+	2	Parent=Os01t0546900-01
Chr01	irgsp1_rep	CDS	20324497	20324566	.	+	1	Parent=Os01t0546900-01
Chr01	irgsp1_rep	CDS	20324664	20324744	.	+	0	Parent=Os01t0546900-01
Chr01	irgsp1_rep	CDS	20325476	20325532	.	+	0	Parent=Os01t0546900-01
Chr01	irgsp1_rep	CDS	20325606	20325717	.	+	0	Parent=Os01t0546900-01
Chr01	irgsp1_rep	CDS	20325795	20326282	.	+	2	Parent=Os01t0546900-01
Chr01	irgsp1_rep	three_prime_UTR	20326283	20326374	.	+	.	Parent=Os01t0546900-01
Chr01	irgsp1_rep	mRNA	20327992	20334833	.	+	.	ID=Os01t0547000-01;Name=Os01t0547000-01;Locus_id=Os01g0547000;Note=Similar to LRR19.;Transcript_evidence=AK121218 (DDBJ%2C Best hit);ORF_evidence=Q9ATQ3 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J023090D06;Expression=AK121218;TENOR=Os01t0547000-01;KEGG=Os01t0547000-01
Chr01	irgsp1_rep	five_prime_UTR	20327992	20328269	.	+	.	Parent=Os01t0547000-01
Chr01	irgsp1_rep	five_prime_UTR	20329071	20329135	.	+	.	Parent=Os01t0547000-01
Chr01	irgsp1_rep	CDS	20329136	20331853	.	+	0	Parent=Os01t0547000-01
Chr01	irgsp1_rep	three_prime_UTR	20331854	20331898	.	+	.	Parent=Os01t0547000-01
Chr01	irgsp1_rep	three_prime_UTR	20332001	20332362	.	+	.	Parent=Os01t0547000-01
Chr01	irgsp1_rep	three_prime_UTR	20333218	20333318	.	+	.	Parent=Os01t0547000-01
Chr01	irgsp1_rep	three_prime_UTR	20333397	20333504	.	+	.	Parent=Os01t0547000-01
Chr01	irgsp1_rep	three_prime_UTR	20333581	20334833	.	+	.	Parent=Os01t0547000-01
Chr01	irgsp1_rep	mRNA	20338468	20342022	.	-	.	ID=Os01t0547133-00;Name=Os01t0547133-00;Locus_id=Os01g0547133;Note=Similar to carboxyl-terminal proteinase.;Transcript_evidence=EU953462 (DDBJ);ORF_evidence=NP_001151558.1 (RefSeq);InterPro=Glucoamylase%2C putatuve (IPR004314);TENOR=Os01t0547133-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	20341193	20342022	.	-	0	Parent=Os01t0547133-00
Chr01	irgsp1_rep	CDS	20340281	20340446	.	-	1	Parent=Os01t0547133-00
Chr01	irgsp1_rep	CDS	20339978	20340031	.	-	0	Parent=Os01t0547133-00
Chr01	irgsp1_rep	CDS	20339749	20339895	.	-	0	Parent=Os01t0547133-00
Chr01	irgsp1_rep	CDS	20338468	20338851	.	-	0	Parent=Os01t0547133-00
Chr01	irgsp1_rep	mRNA	20351529	20364454	.	-	.	ID=Os01t0547200-01;Name=Os01t0547200-01;Locus_id=Os01g0547200;RAP-DB Gene Symbol Synonym(s)=ZBED;Note=Zn-finger BED domain containing protein%2C DNA-binding protein%2C Disease resistance%2C Drought tolerance;Transcript_evidence=AK073447;ORF_evidence=A0A0P0V3S3;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Zinc finger%2C BED-type (IPR003656);NIAS_FLcDNA=J033045B17;Manual Curation=September 25%2C 2020;Literature_PMID=33013945;TENOR=Os01t0547200-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	20364187	20364454	.	-	.	Parent=Os01t0547200-01
Chr01	irgsp1_rep	five_prime_UTR	20363913	20363942	.	-	.	Parent=Os01t0547200-01
Chr01	irgsp1_rep	CDS	20363661	20363912	.	-	0	Parent=Os01t0547200-01
Chr01	irgsp1_rep	CDS	20361335	20361748	.	-	0	Parent=Os01t0547200-01
Chr01	irgsp1_rep	CDS	20360261	20360644	.	-	0	Parent=Os01t0547200-01
Chr01	irgsp1_rep	CDS	20359456	20359653	.	-	0	Parent=Os01t0547200-01
Chr01	irgsp1_rep	CDS	20358469	20358780	.	-	0	Parent=Os01t0547200-01
Chr01	irgsp1_rep	CDS	20354941	20355378	.	-	0	Parent=Os01t0547200-01
Chr01	irgsp1_rep	CDS	20354283	20354471	.	-	0	Parent=Os01t0547200-01
Chr01	irgsp1_rep	CDS	20353440	20353706	.	-	0	Parent=Os01t0547200-01
Chr01	irgsp1_rep	three_prime_UTR	20353094	20353439	.	-	.	Parent=Os01t0547200-01
Chr01	irgsp1_rep	three_prime_UTR	20352858	20352901	.	-	.	Parent=Os01t0547200-01
Chr01	irgsp1_rep	three_prime_UTR	20351529	20352764	.	-	.	Parent=Os01t0547200-01
Chr01	irgsp1_rep	mRNA	20381777	20384893	.	-	.	ID=Os01t0547500-01;Name=Os01t0547500-01;Locus_id=Os01g0547500;Note=Similar to Glycosyl hydrolase family 9 protein%2C expressed.;Transcript_evidence=AK073647 (DDBJ%2C Best hit);ORF_evidence=Q2QSI0 (UniProt);NIAS_FLcDNA=J033049L09;TENOR=Os01t0547500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	20384660	20384893	.	-	.	Parent=Os01t0547500-01
Chr01	irgsp1_rep	five_prime_UTR	20383054	20383603	.	-	.	Parent=Os01t0547500-01
Chr01	irgsp1_rep	CDS	20383053	20383053	.	-	0	Parent=Os01t0547500-01
Chr01	irgsp1_rep	CDS	20382765	20382969	.	-	2	Parent=Os01t0547500-01
Chr01	irgsp1_rep	CDS	20381976	20381991	.	-	1	Parent=Os01t0547500-01
Chr01	irgsp1_rep	three_prime_UTR	20381777	20381975	.	-	.	Parent=Os01t0547500-01
Chr01	irgsp1_rep	mRNA	20380889	20384889	.	-	.	ID=Os01t0547500-02;Name=Os01t0547500-02;Locus_id=Os01g0547500;Note=Similar to Glycosyl hydrolase family 9 protein%2C expressed.;Transcript_evidence=AK287511 (DDBJ%2C Best hit);ORF_evidence=Q2QSI0 (UniProt);NIAS_FLcDNA=J053026N11;TENOR=Os01t0547500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	20383054	20384889	.	-	.	Parent=Os01t0547500-02
Chr01	irgsp1_rep	CDS	20383053	20383053	.	-	0	Parent=Os01t0547500-02
Chr01	irgsp1_rep	CDS	20382761	20382933	.	-	2	Parent=Os01t0547500-02
Chr01	irgsp1_rep	three_prime_UTR	20380889	20382760	.	-	.	Parent=Os01t0547500-02
Chr01	irgsp1_rep	mRNA	20385993	20388511	.	-	.	ID=Os01t0547600-01;Name=Os01t0547600-01;Locus_id=Os01g0547600;RAP-DB Gene Symbol Synonym(s)=NRT2.4%2C OsNRT2.4;RAP-DB Gene Name Synonym(s)=HIGH AFFINITY NITRATE TRANSPORTER%2C high-affinity nitrate transporter 2.4;CGSNL Gene Symbol=NRT2.4;CGSNL Gene Name=HIGH AFFINITY NITRATE TRANSPORTER;Oryzabase Gene Symbol Synonym(s)=OsNRT2.4;Oryzabase Gene Name Synonym(s)=high-affinity nitrate transporter 2.4;Note=High-affinity nitrate transporter%2C Nitrate transport%2C Auxin signaling;Transcript_evidence=XM_015780622.1.;ORF_evidence=A2ZU80;GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral component of membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),Major facilitator superfamily domain (IPR020846);Manual Curation=November 2%2C 2016;Literature_PMID=21486304,21220781,20862512;Oryzabase=6250;TENOR=Os01t0547600-00
Chr01	irgsp1_rep	five_prime_UTR	20388404	20388511	.	-	.	Parent=Os01t0547600-01
Chr01	irgsp1_rep	CDS	20387205	20388403	.	-	0	Parent=Os01t0547600-01
Chr01	irgsp1_rep	CDS	20386195	20386453	.	-	1	Parent=Os01t0547600-01
Chr01	irgsp1_rep	three_prime_UTR	20385993	20386194	.	-	.	Parent=Os01t0547600-01
Chr01	irgsp1_rep	mRNA	20407433	20414990	.	-	.	ID=Os01t0548000-01;Name=Os01t0548000-01;Locus_id=Os01g0548000;Oryzabase Gene Symbol Synonym(s)=OsSTA16;Note=Conserved hypothetical protein.;Transcript_evidence=AK100868 (DDBJ%2C Best hit);ORF_evidence=Q7X8F3 (UniProt);NIAS_FLcDNA=J023124F24;Oryzabase=19328;TENOR=Os01t0548000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	20414937	20414990	.	-	.	Parent=Os01t0548000-01
Chr01	irgsp1_rep	five_prime_UTR	20414772	20414860	.	-	.	Parent=Os01t0548000-01
Chr01	irgsp1_rep	five_prime_UTR	20414607	20414672	.	-	.	Parent=Os01t0548000-01
Chr01	irgsp1_rep	CDS	20414316	20414606	.	-	0	Parent=Os01t0548000-01
Chr01	irgsp1_rep	three_prime_UTR	20413854	20414315	.	-	.	Parent=Os01t0548000-01
Chr01	irgsp1_rep	three_prime_UTR	20413528	20413731	.	-	.	Parent=Os01t0548000-01
Chr01	irgsp1_rep	three_prime_UTR	20413372	20413440	.	-	.	Parent=Os01t0548000-01
Chr01	irgsp1_rep	three_prime_UTR	20408912	20409077	.	-	.	Parent=Os01t0548000-01
Chr01	irgsp1_rep	three_prime_UTR	20408664	20408827	.	-	.	Parent=Os01t0548000-01
Chr01	irgsp1_rep	three_prime_UTR	20408383	20408583	.	-	.	Parent=Os01t0548000-01
Chr01	irgsp1_rep	three_prime_UTR	20408172	20408301	.	-	.	Parent=Os01t0548000-01
Chr01	irgsp1_rep	three_prime_UTR	20407967	20408093	.	-	.	Parent=Os01t0548000-01
Chr01	irgsp1_rep	three_prime_UTR	20407805	20407880	.	-	.	Parent=Os01t0548000-01
Chr01	irgsp1_rep	three_prime_UTR	20407433	20407718	.	-	.	Parent=Os01t0548000-01
Chr01	irgsp1_rep	mRNA	20414117	20414976	.	-	.	ID=Os01t0548000-02;Name=Os01t0548000-02;Locus_id=Os01g0548000;Oryzabase Gene Symbol Synonym(s)=OsSTA16;Note=Conserved hypothetical protein.;Transcript_evidence=AK108360 (DDBJ%2C Best hit);ORF_evidence=Q7X8F3 (UniProt);NIAS_FLcDNA=002-142-C09;Oryzabase=19328;TENOR=Os01t0548000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	20414937	20414976	.	-	.	Parent=Os01t0548000-02
Chr01	irgsp1_rep	five_prime_UTR	20414772	20414857	.	-	.	Parent=Os01t0548000-02
Chr01	irgsp1_rep	five_prime_UTR	20414607	20414672	.	-	.	Parent=Os01t0548000-02
Chr01	irgsp1_rep	CDS	20414316	20414606	.	-	0	Parent=Os01t0548000-02
Chr01	irgsp1_rep	three_prime_UTR	20414117	20414315	.	-	.	Parent=Os01t0548000-02
Chr01	irgsp1_rep	mRNA	20464727	20466410	.	-	.	ID=Os01t0548600-01;Name=Os01t0548600-01;Locus_id=Os01g0548600;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK110719 (DDBJ%2C Best hit);ORF_evidence=B9EXG1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=002-170-D10;TENOR=Os01t0548600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	20466175	20466410	.	-	0	Parent=Os01t0548600-01
Chr01	irgsp1_rep	CDS	20465941	20466091	.	-	1	Parent=Os01t0548600-01
Chr01	irgsp1_rep	CDS	20464846	20465172	.	-	0	Parent=Os01t0548600-01
Chr01	irgsp1_rep	three_prime_UTR	20464727	20464845	.	-	.	Parent=Os01t0548600-01
Chr01	irgsp1_rep	mRNA	20468335	20469249	.	-	.	ID=Os01t0548750-00;Name=Os01t0548750-00;Locus_id=Os01g0548750;Note=Gnk2-homologous domain domain containing protein.;Transcript_evidence=FP098972 (DDBJ);ORF_evidence=XP_002455789.1 (RefSeq);InterPro=Gnk2-homologous domain (IPR002902);TENOR=Os01t0548750-00
Chr01	irgsp1_rep	CDS	20468335	20469249	.	-	0	Parent=Os01t0548750-00
Chr01	irgsp1_rep	mRNA	20481037	20481958	.	-	.	ID=Os01t0548900-00;Name=Os01t0548900-00;Locus_id=Os01g0548900;Note=Hypothetical conserved gene.;Transcript_evidence=EU944494 (DDBJ);ORF_evidence=Q5JJR0 (UniProt);TENOR=Os01t0548900-00;KEGG=Os01t0548900-00
Chr01	irgsp1_rep	five_prime_UTR	20481958	20481958	.	-	.	Parent=Os01t0548900-00
Chr01	irgsp1_rep	CDS	20481854	20481957	.	-	0	Parent=Os01t0548900-00
Chr01	irgsp1_rep	CDS	20481037	20481490	.	-	1	Parent=Os01t0548900-00
Chr01	irgsp1_rep	mRNA	20487491	20488635	.	+	.	ID=Os01t0549000-00;Name=Os01t0549000-00;Locus_id=Os01g0549000;Note=Similar to Polygalacturonase (Fragment).;Transcript_evidence=EU968920 (DDBJ);ORF_evidence=Q27SZ4 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);TENOR=Os01t0549000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	20487491	20487737	.	+	0	Parent=Os01t0549000-00
Chr01	irgsp1_rep	CDS	20487842	20487923	.	+	2	Parent=Os01t0549000-00
Chr01	irgsp1_rep	CDS	20488018	20488126	.	+	1	Parent=Os01t0549000-00
Chr01	irgsp1_rep	CDS	20488219	20488635	.	+	0	Parent=Os01t0549000-00
Chr01	irgsp1_rep	mRNA	20487351	20488590	.	-	.	ID=Os01t0549100-01;Name=Os01t0549100-01;Locus_id=Os01g0549100;Note=Hypothetical protein.;Transcript_evidence=AK119995 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-184-G11;TENOR=Os01t0549100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	20488569	20488590	.	-	.	Parent=Os01t0549100-01
Chr01	irgsp1_rep	CDS	20488302	20488568	.	-	0	Parent=Os01t0549100-01
Chr01	irgsp1_rep	three_prime_UTR	20488248	20488301	.	-	.	Parent=Os01t0549100-01
Chr01	irgsp1_rep	three_prime_UTR	20487351	20487732	.	-	.	Parent=Os01t0549100-01
Chr01	irgsp1_rep	mRNA	20493491	20501757	.	-	.	ID=Os01t0549200-01;Name=Os01t0549200-01;Locus_id=Os01g0549200;CGSNL Gene Symbol=MORC6C;CGSNL Gene Name=MICRORCHIDIA PROTEIN 6C;Oryzabase Gene Symbol Synonym(s)=OsMORC6c%2C MORC6%2C OsMORC6;Oryzabase Gene Name Synonym(s)=Microrchidia protein 6c%2C ATP-binding protein MORC6;Note=Hypothetical conserved gene.;Transcript_evidence=AK065436 (DDBJ%2C Best hit);ORF_evidence=B8AA06 (UniProt);NIAS_FLcDNA=J013024A18;Oryzabase=22642;Expression=AK065436;TENOR=Os01t0549200-01;KEGG=Os01t0549200-01
Chr01	irgsp1_rep	five_prime_UTR	20501695	20501757	.	-	.	Parent=Os01t0549200-01
Chr01	irgsp1_rep	CDS	20501295	20501694	.	-	0	Parent=Os01t0549200-01
Chr01	irgsp1_rep	CDS	20501049	20501149	.	-	2	Parent=Os01t0549200-01
Chr01	irgsp1_rep	three_prime_UTR	20500403	20501048	.	-	.	Parent=Os01t0549200-01
Chr01	irgsp1_rep	three_prime_UTR	20500235	20500313	.	-	.	Parent=Os01t0549200-01
Chr01	irgsp1_rep	three_prime_UTR	20500043	20500132	.	-	.	Parent=Os01t0549200-01
Chr01	irgsp1_rep	three_prime_UTR	20499879	20499954	.	-	.	Parent=Os01t0549200-01
Chr01	irgsp1_rep	three_prime_UTR	20499310	20499388	.	-	.	Parent=Os01t0549200-01
Chr01	irgsp1_rep	three_prime_UTR	20499078	20499212	.	-	.	Parent=Os01t0549200-01
Chr01	irgsp1_rep	three_prime_UTR	20497199	20497752	.	-	.	Parent=Os01t0549200-01
Chr01	irgsp1_rep	three_prime_UTR	20496955	20497101	.	-	.	Parent=Os01t0549200-01
Chr01	irgsp1_rep	three_prime_UTR	20495874	20495966	.	-	.	Parent=Os01t0549200-01
Chr01	irgsp1_rep	three_prime_UTR	20494782	20494833	.	-	.	Parent=Os01t0549200-01
Chr01	irgsp1_rep	three_prime_UTR	20493491	20494688	.	-	.	Parent=Os01t0549200-01
Chr01	irgsp1_rep	mRNA	20489205	20501754	.	-	.	ID=Os01t0549200-02;Name=Os01t0549200-02;Locus_id=Os01g0549200;CGSNL Gene Symbol=MORC6C;CGSNL Gene Name=MICRORCHIDIA PROTEIN 6C;Oryzabase Gene Symbol Synonym(s)=OsMORC6c%2C MORC6%2C OsMORC6;Oryzabase Gene Name Synonym(s)=Microrchidia protein 6c%2C ATP-binding protein MORC6;Note=ATPase-like%2C ATP-binding domain domain containing protein.;Transcript_evidence=AK101868 (DDBJ%2C Best hit);ORF_evidence=B8AA06 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=ATPase-like%2C ATP-binding domain (IPR003594);NIAS_FLcDNA=J033070D24;Oryzabase=22642;TENOR=Os01t0549200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	20501695	20501754	.	-	.	Parent=Os01t0549200-02
Chr01	irgsp1_rep	CDS	20501295	20501694	.	-	0	Parent=Os01t0549200-02
Chr01	irgsp1_rep	CDS	20501075	20501149	.	-	2	Parent=Os01t0549200-02
Chr01	irgsp1_rep	CDS	20500403	20500437	.	-	2	Parent=Os01t0549200-02
Chr01	irgsp1_rep	CDS	20500235	20500313	.	-	0	Parent=Os01t0549200-02
Chr01	irgsp1_rep	CDS	20500043	20500132	.	-	2	Parent=Os01t0549200-02
Chr01	irgsp1_rep	CDS	20499879	20499954	.	-	2	Parent=Os01t0549200-02
Chr01	irgsp1_rep	CDS	20499310	20499388	.	-	1	Parent=Os01t0549200-02
Chr01	irgsp1_rep	CDS	20499078	20499212	.	-	0	Parent=Os01t0549200-02
Chr01	irgsp1_rep	CDS	20497630	20497752	.	-	0	Parent=Os01t0549200-02
Chr01	irgsp1_rep	three_prime_UTR	20497199	20497629	.	-	.	Parent=Os01t0549200-02
Chr01	irgsp1_rep	three_prime_UTR	20496955	20497101	.	-	.	Parent=Os01t0549200-02
Chr01	irgsp1_rep	three_prime_UTR	20495874	20495966	.	-	.	Parent=Os01t0549200-02
Chr01	irgsp1_rep	three_prime_UTR	20494782	20494833	.	-	.	Parent=Os01t0549200-02
Chr01	irgsp1_rep	three_prime_UTR	20494577	20494688	.	-	.	Parent=Os01t0549200-02
Chr01	irgsp1_rep	three_prime_UTR	20494009	20494169	.	-	.	Parent=Os01t0549200-02
Chr01	irgsp1_rep	three_prime_UTR	20493156	20493346	.	-	.	Parent=Os01t0549200-02
Chr01	irgsp1_rep	three_prime_UTR	20492986	20493053	.	-	.	Parent=Os01t0549200-02
Chr01	irgsp1_rep	three_prime_UTR	20492226	20492302	.	-	.	Parent=Os01t0549200-02
Chr01	irgsp1_rep	three_prime_UTR	20491061	20491103	.	-	.	Parent=Os01t0549200-02
Chr01	irgsp1_rep	three_prime_UTR	20489205	20489836	.	-	.	Parent=Os01t0549200-02
Chr01	irgsp1_rep	mRNA	20489220	20497752	.	-	.	ID=Os01t0549200-03;Name=Os01t0549200-03;Locus_id=Os01g0549200;CGSNL Gene Symbol=MORC6C;CGSNL Gene Name=MICRORCHIDIA PROTEIN 6C;Oryzabase Gene Symbol Synonym(s)=OsMORC6c%2C MORC6%2C OsMORC6;Oryzabase Gene Name Synonym(s)=Microrchidia protein 6c%2C ATP-binding protein MORC6;Note=Hypothetical conserved gene.;Transcript_evidence=AK060747 (DDBJ%2C Best hit);ORF_evidence=B9EXG4 (UniProt);NIAS_FLcDNA=001-032-F03;Oryzabase=22642;Expression=AK060747;TENOR=Os01t0549200-03;KEGG=Os01t0549200-03
Chr01	irgsp1_rep	CDS	20497654	20497752	.	-	0	Parent=Os01t0549200-03
Chr01	irgsp1_rep	CDS	20497199	20497300	.	-	0	Parent=Os01t0549200-03
Chr01	irgsp1_rep	CDS	20496955	20497101	.	-	0	Parent=Os01t0549200-03
Chr01	irgsp1_rep	CDS	20495874	20495966	.	-	0	Parent=Os01t0549200-03
Chr01	irgsp1_rep	CDS	20494782	20494833	.	-	0	Parent=Os01t0549200-03
Chr01	irgsp1_rep	CDS	20494577	20494688	.	-	2	Parent=Os01t0549200-03
Chr01	irgsp1_rep	CDS	20493156	20493346	.	-	1	Parent=Os01t0549200-03
Chr01	irgsp1_rep	CDS	20492986	20493053	.	-	2	Parent=Os01t0549200-03
Chr01	irgsp1_rep	CDS	20492238	20492302	.	-	0	Parent=Os01t0549200-03
Chr01	irgsp1_rep	CDS	20491061	20491103	.	-	1	Parent=Os01t0549200-03
Chr01	irgsp1_rep	CDS	20489741	20489836	.	-	0	Parent=Os01t0549200-03
Chr01	irgsp1_rep	three_prime_UTR	20489220	20489740	.	-	.	Parent=Os01t0549200-03
Chr01	irgsp1_rep	mRNA	20502300	20502721	.	+	.	ID=Os01t0549250-01;Name=Os01t0549250-01;Locus_id=Os01g0549250;Note=Conserved hypothetical protein.;Transcript_evidence=AK240961 (DDBJ%2C Best hit);ORF_evidence=NP_001172411.1 (RefSeq);NIAS_FLcDNA=J065045M13;TENOR=Os01t0549250-01;KEGG=Os01t0549250-01
Chr01	irgsp1_rep	five_prime_UTR	20502300	20502373	.	+	.	Parent=Os01t0549250-01
Chr01	irgsp1_rep	CDS	20502374	20502469	.	+	0	Parent=Os01t0549250-01
Chr01	irgsp1_rep	three_prime_UTR	20502470	20502721	.	+	.	Parent=Os01t0549250-01
Chr01	irgsp1_rep	mRNA	20518681	20521502	.	-	.	ID=Os01t0549300-01;Name=Os01t0549300-01;Locus_id=Os01g0549300;CGSNL Gene Symbol=MSL04;CGSNL Gene Name=MYB/SANT-LIKE 4;Oryzabase Gene Symbol Synonym(s)=OsMSL04%2C MSL4;Oryzabase Gene Name Synonym(s)=Myb/SANT-LIKE 4;Note=Homeodomain-like domain containing protein.;Transcript_evidence=AK107646 (DDBJ%2C Best hit);ORF_evidence=A2XU62 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),MYB-like (IPR017877);NIAS_FLcDNA=002-131-F07;Oryzabase=22947;TENOR=Os01t0549300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	20521337	20521502	.	-	0	Parent=Os01t0549300-01
Chr01	irgsp1_rep	CDS	20520851	20521184	.	-	2	Parent=Os01t0549300-01
Chr01	irgsp1_rep	CDS	20519096	20520152	.	-	1	Parent=Os01t0549300-01
Chr01	irgsp1_rep	three_prime_UTR	20519092	20519095	.	-	.	Parent=Os01t0549300-01
Chr01	irgsp1_rep	three_prime_UTR	20518681	20518975	.	-	.	Parent=Os01t0549300-01
Chr01	irgsp1_rep	mRNA	20522447	20528163	.	+	.	ID=Os01t0549400-01;Name=Os01t0549400-01;Locus_id=Os01g0549400;Note=Similar to RNA helicase-like protein DB10.;Transcript_evidence=AK122104 (DDBJ%2C Best hit);ORF_evidence=Q5JKF2 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=RNA helicase%2C ATP-dependent%2C DEAD-box%2C conserved site (IPR000629),WW/Rsp5/WWP (IPR001202),Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=J033125P18;Expression=AK122104;TENOR=Os01t0549400-01;KEGG=Os01t0549400-01 (EC:3.6.4.13)
Chr01	irgsp1_rep	five_prime_UTR	20522447	20522557	.	+	.	Parent=Os01t0549400-01
Chr01	irgsp1_rep	CDS	20522558	20522980	.	+	0	Parent=Os01t0549400-01
Chr01	irgsp1_rep	CDS	20523103	20523171	.	+	0	Parent=Os01t0549400-01
Chr01	irgsp1_rep	CDS	20524094	20524363	.	+	0	Parent=Os01t0549400-01
Chr01	irgsp1_rep	CDS	20524624	20524974	.	+	0	Parent=Os01t0549400-01
Chr01	irgsp1_rep	CDS	20525141	20525418	.	+	0	Parent=Os01t0549400-01
Chr01	irgsp1_rep	CDS	20526645	20526989	.	+	1	Parent=Os01t0549400-01
Chr01	irgsp1_rep	CDS	20527236	20527878	.	+	1	Parent=Os01t0549400-01
Chr01	irgsp1_rep	three_prime_UTR	20527879	20528163	.	+	.	Parent=Os01t0549400-01
Chr01	irgsp1_rep	mRNA	20523343	20528130	.	+	.	ID=Os01t0549400-02;Name=Os01t0549400-02;Locus_id=Os01g0549400;Note=Similar to cDNA clone:J013059F16%2C full insert sequence.;Transcript_evidence=AK102720 (DDBJ%2C Best hit);ORF_evidence=Q5JKF2-2 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=RNA helicase%2C ATP-dependent%2C DEAD-box%2C conserved site (IPR000629),Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=J033105G04;Expression=AK102720;TENOR=Os01t0549400-02;KEGG=Os01t0549400-02 (EC:3.6.4.13)
Chr01	irgsp1_rep	five_prime_UTR	20523343	20523879	.	+	.	Parent=Os01t0549400-02
Chr01	irgsp1_rep	CDS	20523880	20523948	.	+	0	Parent=Os01t0549400-02
Chr01	irgsp1_rep	CDS	20524094	20524363	.	+	0	Parent=Os01t0549400-02
Chr01	irgsp1_rep	CDS	20524624	20524974	.	+	0	Parent=Os01t0549400-02
Chr01	irgsp1_rep	CDS	20525141	20525418	.	+	0	Parent=Os01t0549400-02
Chr01	irgsp1_rep	CDS	20526645	20526989	.	+	1	Parent=Os01t0549400-02
Chr01	irgsp1_rep	CDS	20527236	20527878	.	+	1	Parent=Os01t0549400-02
Chr01	irgsp1_rep	three_prime_UTR	20527879	20528130	.	+	.	Parent=Os01t0549400-02
Chr01	irgsp1_rep	mRNA	20524059	20528163	.	+	.	ID=Os01t0549400-03;Name=Os01t0549400-03;Locus_id=Os01g0549400;Note=Similar to predicted protein.;Transcript_evidence=AK066294 (DDBJ%2C Best hit);ORF_evidence=Q5JKF2 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=RNA helicase%2C ATP-dependent%2C DEAD-box%2C conserved site (IPR000629),Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J013059F16;Expression=AK066294;TENOR=Os01t0549400-03;KEGG=Os01t0549400-03 (EC:3.6.4.13)
Chr01	irgsp1_rep	five_prime_UTR	20524059	20524060	.	+	.	Parent=Os01t0549400-03
Chr01	irgsp1_rep	CDS	20524061	20524363	.	+	0	Parent=Os01t0549400-03
Chr01	irgsp1_rep	CDS	20524624	20524974	.	+	0	Parent=Os01t0549400-03
Chr01	irgsp1_rep	CDS	20525141	20525418	.	+	0	Parent=Os01t0549400-03
Chr01	irgsp1_rep	CDS	20526645	20526989	.	+	1	Parent=Os01t0549400-03
Chr01	irgsp1_rep	CDS	20527236	20527878	.	+	1	Parent=Os01t0549400-03
Chr01	irgsp1_rep	three_prime_UTR	20527879	20528163	.	+	.	Parent=Os01t0549400-03
Chr01	irgsp1_rep	mRNA	20526673	20528163	.	+	.	ID=Os01t0549400-04;Name=Os01t0549400-04;Locus_id=Os01g0549400;Note=Similar to cDNA clone:J013059F16%2C full insert sequence.;Transcript_evidence=AK062222 (DDBJ%2C Best hit);ORF_evidence=B7EC00 (UniProt);NIAS_FLcDNA=001-047-B09;TENOR=Os01t0549400-04;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	20526673	20526831	.	+	.	Parent=Os01t0549400-04
Chr01	irgsp1_rep	CDS	20526832	20526989	.	+	0	Parent=Os01t0549400-04
Chr01	irgsp1_rep	CDS	20527236	20527878	.	+	1	Parent=Os01t0549400-04
Chr01	irgsp1_rep	three_prime_UTR	20527879	20528163	.	+	.	Parent=Os01t0549400-04
Chr01	irgsp1_rep	mRNA	20535226	20538945	.	-	.	ID=Os01t0549500-01;Name=Os01t0549500-01;Locus_id=Os01g0549500;Note=Phox-like domain containing protein.;Transcript_evidence=AK099741 (DDBJ%2C Best hit);ORF_evidence=NP_680104.1 (RefSeq);GO=Biological Process: cell communication (GO:0007154),Molecular Function: protein binding (GO:0005515),Molecular Function: phosphatidylinositol binding (GO:0035091);InterPro=Phox homologous domain (IPR001683);NIAS_FLcDNA=J013091C15;Expression=AK099741;TENOR=Os01t0549500-01;KEGG=Os01t0549500-01
Chr01	irgsp1_rep	five_prime_UTR	20538887	20538945	.	-	.	Parent=Os01t0549500-01
Chr01	irgsp1_rep	CDS	20538560	20538886	.	-	0	Parent=Os01t0549500-01
Chr01	irgsp1_rep	CDS	20536816	20537850	.	-	0	Parent=Os01t0549500-01
Chr01	irgsp1_rep	CDS	20536463	20536688	.	-	0	Parent=Os01t0549500-01
Chr01	irgsp1_rep	CDS	20535661	20535803	.	-	2	Parent=Os01t0549500-01
Chr01	irgsp1_rep	CDS	20535273	20535578	.	-	0	Parent=Os01t0549500-01
Chr01	irgsp1_rep	three_prime_UTR	20535226	20535272	.	-	.	Parent=Os01t0549500-01
Chr01	irgsp1_rep	mRNA	20535110	20538919	.	-	.	ID=Os01t0549500-02;Name=Os01t0549500-02;Locus_id=Os01g0549500;Note=Phox-like domain containing protein.;Transcript_evidence=AK070641 (DDBJ%2C Best hit);ORF_evidence=NP_680104.1 (RefSeq);GO=Biological Process: cell communication (GO:0007154),Molecular Function: protein binding (GO:0005515),Molecular Function: phosphatidylinositol binding (GO:0035091);InterPro=Phox homologous domain (IPR001683);NIAS_FLcDNA=J023063K13;Expression=AK070641;TENOR=Os01t0549500-02;KEGG=Os01t0549500-02
Chr01	irgsp1_rep	five_prime_UTR	20538887	20538919	.	-	.	Parent=Os01t0549500-02
Chr01	irgsp1_rep	CDS	20538560	20538886	.	-	0	Parent=Os01t0549500-02
Chr01	irgsp1_rep	CDS	20536816	20537850	.	-	0	Parent=Os01t0549500-02
Chr01	irgsp1_rep	CDS	20536463	20536688	.	-	0	Parent=Os01t0549500-02
Chr01	irgsp1_rep	CDS	20535661	20535803	.	-	2	Parent=Os01t0549500-02
Chr01	irgsp1_rep	CDS	20535273	20535578	.	-	0	Parent=Os01t0549500-02
Chr01	irgsp1_rep	three_prime_UTR	20535110	20535272	.	-	.	Parent=Os01t0549500-02
Chr01	irgsp1_rep	mRNA	20535253	20537852	.	+	.	ID=Os01t0549600-00;Name=Os01t0549600-00;Locus_id=Os01g0549600;Note=Non-protein coding transcript.;Transcript_evidence=tplb0044i09 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os01t0549600-00
Chr01	irgsp1_rep	exon	20535253	20535607	.	+	.	Parent=Os01t0549600-00
Chr01	irgsp1_rep	exon	20535685	20535805	.	+	.	Parent=Os01t0549600-00
Chr01	irgsp1_rep	exon	20536458	20536688	.	+	.	Parent=Os01t0549600-00
Chr01	irgsp1_rep	exon	20536816	20537852	.	+	.	Parent=Os01t0549600-00
Chr01	irgsp1_rep	mRNA	20540847	20547073	.	+	.	ID=Os01t0549700-01;Name=Os01t0549700-01;Locus_id=Os01g0549700;RAP-DB Gene Symbol Synonym(s)=OsBAT1%2C UAP56%2C OsBAT1/UAP56%2C OsAIP1%2C Os AIP1;RAP-DB Gene Name Synonym(s)=HLA-B associated transcript 1%2C spliceosome RNA helicase UAP56%2C API5-INTERACTING PROTEIN1;CGSNL Gene Symbol=AIP1;CGSNL Gene Name=API5-INTERACTING PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=AIP1%2C Os AIP1%2C OsAIP1%2C OsRH56%2C OsBAT1%2C UAP56%2C OsUAP56%2C OsBAT1/UAP56;Oryzabase Gene Name Synonym(s)=API5-INTERACTING PROTEIN1%2C RNA helicase 56%2C HLA-B associated transcript 1%2C spliceosome RNA helicase UAP56;Note=Member of the DExD/H-box family of helicases%2C DEAD-box ATP-dependent RNA helicase%2C RNA and DNA metabolism%2C Response to abiotic stress including salt stress and abscisic acid%2C Regulation of programmed cell death (PCD) during tapetum degeneration;Transcript_evidence=AK067431;ORF_evidence=Q0JM17;GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: ATP binding (GO:0005524);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014),Helicase superfamily 1/2%2C ATP-binding domain (IPR014001),DEAD/DEAH box helicase domain (IPR011545),Helicase%2C C-terminal (IPR001650);NIAS_FLcDNA=J013107H03;Manual Curation=July 27%2C 2020;Literature_PMID=25772680,21467577;Oryzabase=9251;Expression=AK067431;TENOR=Os01t0549700-01;KEGG=Os01t0549700-01 (EC:3.6.4.13);Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737)
Chr01	irgsp1_rep	five_prime_UTR	20540847	20541036	.	+	.	Parent=Os01t0549700-01
Chr01	irgsp1_rep	CDS	20541037	20541164	.	+	0	Parent=Os01t0549700-01
Chr01	irgsp1_rep	CDS	20541270	20541368	.	+	1	Parent=Os01t0549700-01
Chr01	irgsp1_rep	CDS	20542999	20543173	.	+	1	Parent=Os01t0549700-01
Chr01	irgsp1_rep	CDS	20543255	20543486	.	+	0	Parent=Os01t0549700-01
Chr01	irgsp1_rep	CDS	20543633	20543751	.	+	2	Parent=Os01t0549700-01
Chr01	irgsp1_rep	CDS	20544370	20544426	.	+	0	Parent=Os01t0549700-01
Chr01	irgsp1_rep	CDS	20544505	20544689	.	+	0	Parent=Os01t0549700-01
Chr01	irgsp1_rep	CDS	20546142	20546286	.	+	1	Parent=Os01t0549700-01
Chr01	irgsp1_rep	CDS	20546353	20546436	.	+	0	Parent=Os01t0549700-01
Chr01	irgsp1_rep	CDS	20546524	20546587	.	+	0	Parent=Os01t0549700-01
Chr01	irgsp1_rep	CDS	20546689	20546699	.	+	2	Parent=Os01t0549700-01
Chr01	irgsp1_rep	three_prime_UTR	20546700	20547073	.	+	.	Parent=Os01t0549700-01
Chr01	irgsp1_rep	mRNA	20543454	20547043	.	+	.	ID=Os01t0549700-02;Name=Os01t0549700-02;Locus_id=Os01g0549700;CGSNL Gene Symbol=AIP1;CGSNL Gene Name=API5-INTERACTING PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=AIP1%2C Os AIP1%2C OsAIP1%2C OsRH56%2C OsBAT1%2C UAP56%2C OsUAP56%2C OsBAT1/UAP56;Oryzabase Gene Name Synonym(s)=API5-INTERACTING PROTEIN1%2C RNA helicase 56%2C HLA-B associated transcript 1%2C spliceosome RNA helicase UAP56;Note=Similar to cDNA clone:J033114G10%2C full insert sequence.;Transcript_evidence=AK071356 (DDBJ%2C Best hit);ORF_evidence=B7F820 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J023097G12;Oryzabase=9251;Expression=AK071356;TENOR=Os01t0549700-02;KEGG=Os01t0549700-02 (EC:3.6.4.13)
Chr01	irgsp1_rep	five_prime_UTR	20543454	20543455	.	+	.	Parent=Os01t0549700-02
Chr01	irgsp1_rep	CDS	20543456	20543486	.	+	0	Parent=Os01t0549700-02
Chr01	irgsp1_rep	CDS	20543633	20543751	.	+	2	Parent=Os01t0549700-02
Chr01	irgsp1_rep	CDS	20544370	20544426	.	+	0	Parent=Os01t0549700-02
Chr01	irgsp1_rep	CDS	20544505	20544689	.	+	0	Parent=Os01t0549700-02
Chr01	irgsp1_rep	CDS	20546142	20546286	.	+	1	Parent=Os01t0549700-02
Chr01	irgsp1_rep	CDS	20546353	20546436	.	+	0	Parent=Os01t0549700-02
Chr01	irgsp1_rep	CDS	20546524	20546587	.	+	0	Parent=Os01t0549700-02
Chr01	irgsp1_rep	CDS	20546689	20546699	.	+	2	Parent=Os01t0549700-02
Chr01	irgsp1_rep	three_prime_UTR	20546700	20547043	.	+	.	Parent=Os01t0549700-02
Chr01	irgsp1_rep	mRNA	20546524	20547038	.	+	.	ID=Os01t0549700-03;Name=Os01t0549700-03;Locus_id=Os01g0549700;CGSNL Gene Symbol=AIP1;CGSNL Gene Name=API5-INTERACTING PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=AIP1%2C Os AIP1%2C OsAIP1%2C OsRH56%2C OsBAT1%2C UAP56%2C OsUAP56%2C OsBAT1/UAP56;Oryzabase Gene Name Synonym(s)=API5-INTERACTING PROTEIN1%2C RNA helicase 56%2C HLA-B associated transcript 1%2C spliceosome RNA helicase UAP56;Note=Similar to predicted protein.;Transcript_evidence=AK104852 (DDBJ%2C Best hit);ORF_evidence=NP_850807.2 (RefSeq);NIAS_FLcDNA=001-043-B03;Oryzabase=9251;Expression=AK104852;TENOR=Os01t0549700-03;KEGG=Os01t0549700-03
Chr01	irgsp1_rep	CDS	20546524	20546587	.	+	0	Parent=Os01t0549700-03
Chr01	irgsp1_rep	CDS	20546689	20546699	.	+	2	Parent=Os01t0549700-03
Chr01	irgsp1_rep	three_prime_UTR	20546700	20547038	.	+	.	Parent=Os01t0549700-03
Chr01	irgsp1_rep	mRNA	20571063	20576206	.	+	.	ID=Os01t0550000-01;Name=Os01t0550000-01;Locus_id=Os01g0550000;RAP-DB Gene Symbol Synonym(s)=OsAIP2%2C Os AIP2;RAP-DB Gene Name Synonym(s)=API5-INTERACTING PROTEIN2;CGSNL Gene Symbol=AIP2;CGSNL Gene Name=API5-INTERACTING PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=AIP2%2C Os AIP2%2C OsAIP2%2C OsRH15;Oryzabase Gene Name Synonym(s)=API5-INTERACTING PROTEIN2%2C RNA helicase 15;Note=DEAD-box ATP-dependent RNA helicase%2C Regulation of programmed cell death (PCD) during tapetum degeneration;Transcript_evidence=AK122050;ORF_evidence=Q5JK84;GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: ATP binding (GO:0005524);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014),Helicase superfamily 1/2%2C ATP-binding domain (IPR014001),DEAD/DEAH box helicase domain (IPR011545),Helicase%2C C-terminal (IPR001650);NIAS_FLcDNA=J033114G10;Manual Curation=July 27%2C 2020;Literature_PMID=21467577;Oryzabase=9252;Expression=AK122050;TENOR=Os01t0550000-01;KEGG=Os01t0550000-01 (EC:3.6.4.13);Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737)
Chr01	irgsp1_rep	five_prime_UTR	20571063	20571148	.	+	.	Parent=Os01t0550000-01
Chr01	irgsp1_rep	CDS	20571149	20571276	.	+	0	Parent=Os01t0550000-01
Chr01	irgsp1_rep	CDS	20571380	20571478	.	+	1	Parent=Os01t0550000-01
Chr01	irgsp1_rep	CDS	20572839	20573013	.	+	1	Parent=Os01t0550000-01
Chr01	irgsp1_rep	CDS	20573095	20573326	.	+	0	Parent=Os01t0550000-01
Chr01	irgsp1_rep	CDS	20573473	20573591	.	+	2	Parent=Os01t0550000-01
Chr01	irgsp1_rep	CDS	20574211	20574267	.	+	0	Parent=Os01t0550000-01
Chr01	irgsp1_rep	CDS	20574345	20574529	.	+	0	Parent=Os01t0550000-01
Chr01	irgsp1_rep	CDS	20575306	20575450	.	+	1	Parent=Os01t0550000-01
Chr01	irgsp1_rep	CDS	20575520	20575603	.	+	0	Parent=Os01t0550000-01
Chr01	irgsp1_rep	CDS	20575688	20575751	.	+	0	Parent=Os01t0550000-01
Chr01	irgsp1_rep	CDS	20575852	20575862	.	+	2	Parent=Os01t0550000-01
Chr01	irgsp1_rep	three_prime_UTR	20575863	20576206	.	+	.	Parent=Os01t0550000-01
Chr01	irgsp1_rep	mRNA	20573787	20574427	.	+	.	ID=Os01t0550000-02;Name=Os01t0550000-02;Locus_id=Os01g0550000;CGSNL Gene Symbol=AIP2;CGSNL Gene Name=API5-INTERACTING PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=AIP2%2C Os AIP2%2C OsAIP2%2C OsRH15;Oryzabase Gene Name Synonym(s)=API5-INTERACTING PROTEIN2%2C RNA helicase 15;Note=Similar to spliceosome RNA helicase BAT1.;Transcript_evidence=AK058505 (DDBJ%2C Best hit);ORF_evidence=NP_001149406.1 (RefSeq);NIAS_FLcDNA=001-016-F12;Oryzabase=9252;TENOR=Os01t0550000-02
Chr01	irgsp1_rep	five_prime_UTR	20573787	20574180	.	+	.	Parent=Os01t0550000-02
Chr01	irgsp1_rep	CDS	20574181	20574267	.	+	0	Parent=Os01t0550000-02
Chr01	irgsp1_rep	CDS	20574345	20574427	.	+	0	Parent=Os01t0550000-02
Chr01	irgsp1_rep	mRNA	20581641	20589583	.	-	.	ID=Os01t0550100-01;Name=Os01t0550100-01;Locus_id=Os01g0550100;RAP-DB Gene Symbol Synonym(s)=OsUBP6;RAP-DB Gene Name Synonym(s)=Ubiquitin-specific protease 6;CGSNL Gene Symbol=UBP3;CGSNL Gene Name=UBIQUITIN-SPECIFIC PROCESSING PROTEASE 3;Oryzabase Gene Symbol Synonym(s)=OsUBP3%2C OsUBP6%2C UBP6;Oryzabase Gene Name Synonym(s)=ubiquitin-specific processing protease 3%2C Ubiquitin-specific protease 6;Note=Ubiquitin-specific protease 6 homolog%2C De-ubiquitination enzyme;Transcript_evidence=AK066233;ORF_evidence=Q5JK78;GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Biological Process: protein deubiquitination (GO:0016579),Molecular Function: protein binding (GO:0005515),Molecular Function: thiol-dependent ubiquitinyl hydrolase activity (GO:0036459);InterPro=Ubiquitin-like domain superfamily (IPR029071),Papain-like cysteine peptidase superfamily (IPR038765),Ubiquitin domain (IPR000626),Ubiquitin specific protease domain (IPR028889),Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase (IPR001394),Ubiquitin specific protease%2C conserved site (IPR018200);NIAS_FLcDNA=J013056M18;Manual Curation=October 22%2C 2020;Literature_PMID=19855938;Oryzabase=22875;Expression=AK066233;TENOR=Os01t0550100-01;KEGG=Os01t0550100-01 (EC:3.4.19.12);Subcellular location=nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	20589455	20589583	.	-	.	Parent=Os01t0550100-01
Chr01	irgsp1_rep	CDS	20589445	20589454	.	-	0	Parent=Os01t0550100-01
Chr01	irgsp1_rep	CDS	20587459	20587604	.	-	2	Parent=Os01t0550100-01
Chr01	irgsp1_rep	CDS	20587319	20587354	.	-	0	Parent=Os01t0550100-01
Chr01	irgsp1_rep	CDS	20587099	20587206	.	-	0	Parent=Os01t0550100-01
Chr01	irgsp1_rep	CDS	20586105	20586205	.	-	0	Parent=Os01t0550100-01
Chr01	irgsp1_rep	CDS	20585898	20586024	.	-	1	Parent=Os01t0550100-01
Chr01	irgsp1_rep	CDS	20584854	20584913	.	-	0	Parent=Os01t0550100-01
Chr01	irgsp1_rep	CDS	20584702	20584766	.	-	0	Parent=Os01t0550100-01
Chr01	irgsp1_rep	CDS	20584480	20584533	.	-	1	Parent=Os01t0550100-01
Chr01	irgsp1_rep	CDS	20583898	20584006	.	-	1	Parent=Os01t0550100-01
Chr01	irgsp1_rep	CDS	20583634	20583723	.	-	0	Parent=Os01t0550100-01
Chr01	irgsp1_rep	CDS	20583486	20583554	.	-	0	Parent=Os01t0550100-01
Chr01	irgsp1_rep	CDS	20582879	20582959	.	-	0	Parent=Os01t0550100-01
Chr01	irgsp1_rep	CDS	20582723	20582797	.	-	0	Parent=Os01t0550100-01
Chr01	irgsp1_rep	CDS	20582525	20582573	.	-	0	Parent=Os01t0550100-01
Chr01	irgsp1_rep	CDS	20582207	20582326	.	-	2	Parent=Os01t0550100-01
Chr01	irgsp1_rep	CDS	20582052	20582126	.	-	2	Parent=Os01t0550100-01
Chr01	irgsp1_rep	CDS	20581921	20581970	.	-	2	Parent=Os01t0550100-01
Chr01	irgsp1_rep	three_prime_UTR	20581641	20581920	.	-	.	Parent=Os01t0550100-01
Chr01	irgsp1_rep	mRNA	20581774	20589511	.	-	.	ID=Os01t0550100-02;Name=Os01t0550100-02;Locus_id=Os01g0550100;CGSNL Gene Symbol=UBP3;CGSNL Gene Name=UBIQUITIN-SPECIFIC PROCESSING PROTEASE 3;Oryzabase Gene Symbol Synonym(s)=OsUBP3%2C OsUBP6%2C UBP6;Oryzabase Gene Name Synonym(s)=ubiquitin-specific processing protease 3%2C Ubiquitin-specific protease 6;Note=Similar to Ubiquitin-specific protease 6.;Transcript_evidence=AK062019 (DDBJ%2C Best hit);ORF_evidence=NP_001148768.1 (RefSeq);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Molecular Function: ubiquitin thiolesterase activity (GO:0004221),Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin (IPR000626),Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (IPR001394),Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2%2C conserved site (IPR018200),Ubiquitin supergroup (IPR019955);NIAS_FLcDNA=001-043-F09;Oryzabase=22875;Expression=AK062019;TENOR=Os01t0550100-02;KEGG=Os01t0550100-02 (EC:3.1.2.15)
Chr01	irgsp1_rep	five_prime_UTR	20589455	20589511	.	-	.	Parent=Os01t0550100-02
Chr01	irgsp1_rep	CDS	20589445	20589454	.	-	0	Parent=Os01t0550100-02
Chr01	irgsp1_rep	CDS	20587459	20587604	.	-	2	Parent=Os01t0550100-02
Chr01	irgsp1_rep	CDS	20587319	20587354	.	-	0	Parent=Os01t0550100-02
Chr01	irgsp1_rep	CDS	20587099	20587206	.	-	0	Parent=Os01t0550100-02
Chr01	irgsp1_rep	CDS	20586105	20586205	.	-	0	Parent=Os01t0550100-02
Chr01	irgsp1_rep	CDS	20585898	20586024	.	-	1	Parent=Os01t0550100-02
Chr01	irgsp1_rep	CDS	20584854	20584913	.	-	0	Parent=Os01t0550100-02
Chr01	irgsp1_rep	CDS	20584702	20584766	.	-	0	Parent=Os01t0550100-02
Chr01	irgsp1_rep	CDS	20584480	20584533	.	-	1	Parent=Os01t0550100-02
Chr01	irgsp1_rep	CDS	20583898	20584006	.	-	1	Parent=Os01t0550100-02
Chr01	irgsp1_rep	CDS	20583634	20583723	.	-	0	Parent=Os01t0550100-02
Chr01	irgsp1_rep	CDS	20583486	20583554	.	-	0	Parent=Os01t0550100-02
Chr01	irgsp1_rep	CDS	20582879	20582959	.	-	0	Parent=Os01t0550100-02
Chr01	irgsp1_rep	CDS	20582723	20582797	.	-	0	Parent=Os01t0550100-02
Chr01	irgsp1_rep	CDS	20582525	20582573	.	-	0	Parent=Os01t0550100-02
Chr01	irgsp1_rep	CDS	20582207	20582326	.	-	2	Parent=Os01t0550100-02
Chr01	irgsp1_rep	CDS	20582052	20582126	.	-	2	Parent=Os01t0550100-02
Chr01	irgsp1_rep	CDS	20581921	20581970	.	-	2	Parent=Os01t0550100-02
Chr01	irgsp1_rep	three_prime_UTR	20581774	20581920	.	-	.	Parent=Os01t0550100-02
Chr01	irgsp1_rep	mRNA	20595249	20598788	.	+	.	ID=Os01t0550200-00;Name=Os01t0550200-00;Locus_id=Os01g0550200;Oryzabase Gene Symbol Synonym(s)=OsFbox016%2C OsFbox16%2C Os_F0471%2C OsFBX13;Oryzabase Gene Name Synonym(s)=F-box protein 16;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK248201 (DDBJ);ORF_evidence=B6TDI2 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);Oryzabase=16819;TENOR=Os01t0550200-00;KEGG=Os01t0550200-00
Chr01	irgsp1_rep	five_prime_UTR	20595249	20595359	.	+	.	Parent=Os01t0550200-00
Chr01	irgsp1_rep	CDS	20595360	20595782	.	+	0	Parent=Os01t0550200-00
Chr01	irgsp1_rep	CDS	20596586	20596782	.	+	0	Parent=Os01t0550200-00
Chr01	irgsp1_rep	CDS	20598336	20598597	.	+	1	Parent=Os01t0550200-00
Chr01	irgsp1_rep	three_prime_UTR	20598598	20598788	.	+	.	Parent=Os01t0550200-00
Chr01	irgsp1_rep	mRNA	20598327	20598592	.	-	.	ID=Os01t0550250-00;Name=Os01t0550250-00;Locus_id=Os01g0550250;Note=Non-protein coding transcript.;Transcript_evidence=AM939981 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0550250-00
Chr01	irgsp1_rep	exon	20598327	20598592	.	-	.	Parent=Os01t0550250-00
Chr01	irgsp1_rep	mRNA	20599445	20602258	.	-	.	ID=Os01t0550300-01;Name=Os01t0550300-01;Locus_id=Os01g0550300;Note=Similar to Gda-1 protein.;Transcript_evidence=AK061870 (DDBJ%2C Best hit);ORF_evidence=NP_001150270.1 (RefSeq);InterPro=Development/cell death domain (IPR013989);NIAS_FLcDNA=001-041-A03;Expression=AK061870;TENOR=Os01t0550300-01;KEGG=Os01t0550300-01
Chr01	irgsp1_rep	five_prime_UTR	20602192	20602258	.	-	.	Parent=Os01t0550300-01
Chr01	irgsp1_rep	CDS	20602005	20602191	.	-	0	Parent=Os01t0550300-01
Chr01	irgsp1_rep	CDS	20601474	20601932	.	-	2	Parent=Os01t0550300-01
Chr01	irgsp1_rep	CDS	20601240	20601340	.	-	2	Parent=Os01t0550300-01
Chr01	irgsp1_rep	CDS	20600791	20600874	.	-	0	Parent=Os01t0550300-01
Chr01	irgsp1_rep	CDS	20600001	20600111	.	-	0	Parent=Os01t0550300-01
Chr01	irgsp1_rep	CDS	20599809	20599853	.	-	0	Parent=Os01t0550300-01
Chr01	irgsp1_rep	three_prime_UTR	20599445	20599808	.	-	.	Parent=Os01t0550300-01
Chr01	irgsp1_rep	mRNA	20599446	20602258	.	-	.	ID=Os01t0550300-02;Name=Os01t0550300-02;Locus_id=Os01g0550300;Note=Similar to N-rich protein.;Transcript_evidence=AK106151 (DDBJ%2C Best hit),AK067529 (DDBJ%2C Best hit);ORF_evidence=NP_001150270.1 (RefSeq);InterPro=Development/cell death domain (IPR013989);NIAS_FLcDNA=001-207-H09,J013108E24;Expression=AK106151;TENOR=Os01t0550300-02;KEGG=Os01t0550300-02
Chr01	irgsp1_rep	five_prime_UTR	20602192	20602258	.	-	.	Parent=Os01t0550300-02
Chr01	irgsp1_rep	CDS	20601474	20602191	.	-	0	Parent=Os01t0550300-02
Chr01	irgsp1_rep	CDS	20601240	20601340	.	-	2	Parent=Os01t0550300-02
Chr01	irgsp1_rep	CDS	20600791	20600874	.	-	0	Parent=Os01t0550300-02
Chr01	irgsp1_rep	CDS	20600001	20600111	.	-	0	Parent=Os01t0550300-02
Chr01	irgsp1_rep	CDS	20599809	20599853	.	-	0	Parent=Os01t0550300-02
Chr01	irgsp1_rep	three_prime_UTR	20599446	20599808	.	-	.	Parent=Os01t0550300-02
Chr01	irgsp1_rep	mRNA	20628587	20631077	.	+	.	ID=Os01t0550600-00;Name=Os01t0550600-00;Locus_id=Os01g0550600;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001172412.1 (RefSeq);TENOR=Os01t0550600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	20628587	20629808	.	+	0	Parent=Os01t0550600-00
Chr01	irgsp1_rep	CDS	20629990	20631077	.	+	2	Parent=Os01t0550600-00
Chr01	irgsp1_rep	mRNA	20640981	20643879	.	+	.	ID=Os01t0550800-01;Name=Os01t0550800-01;Locus_id=Os01g0550800;Note=Protein of unknown function DUF239%2C plant domain containing protein.;Transcript_evidence=AK064194 (DDBJ%2C Best hit);ORF_evidence=NP_001152099.1 (RefSeq);InterPro=Glucoamylase%2C putatuve (IPR004314);NIAS_FLcDNA=002-104-D02;Expression=AK064194;TENOR=Os01t0550800-01;KEGG=Os01t0550800-01
Chr01	irgsp1_rep	five_prime_UTR	20640981	20641028	.	+	.	Parent=Os01t0550800-01
Chr01	irgsp1_rep	CDS	20641029	20641181	.	+	0	Parent=Os01t0550800-01
Chr01	irgsp1_rep	CDS	20641280	20641366	.	+	0	Parent=Os01t0550800-01
Chr01	irgsp1_rep	CDS	20641499	20641726	.	+	0	Parent=Os01t0550800-01
Chr01	irgsp1_rep	CDS	20641904	20642074	.	+	0	Parent=Os01t0550800-01
Chr01	irgsp1_rep	CDS	20642733	20642786	.	+	0	Parent=Os01t0550800-01
Chr01	irgsp1_rep	CDS	20642918	20643064	.	+	0	Parent=Os01t0550800-01
Chr01	irgsp1_rep	CDS	20643216	20643596	.	+	0	Parent=Os01t0550800-01
Chr01	irgsp1_rep	three_prime_UTR	20643597	20643879	.	+	.	Parent=Os01t0550800-01
Chr01	irgsp1_rep	mRNA	20641271	20643562	.	-	.	ID=Os01t0550850-00;Name=Os01t0550850-00;Locus_id=Os01g0550850;Note=Non-protein coding transcript.;Transcript_evidence=tplb0062i11 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os01t0550850-00
Chr01	irgsp1_rep	exon	20643214	20643562	.	-	.	Parent=Os01t0550850-00
Chr01	irgsp1_rep	exon	20642898	20643062	.	-	.	Parent=Os01t0550850-00
Chr01	irgsp1_rep	exon	20641924	20642110	.	-	.	Parent=Os01t0550850-00
Chr01	irgsp1_rep	exon	20641506	20641739	.	-	.	Parent=Os01t0550850-00
Chr01	irgsp1_rep	exon	20641271	20641392	.	-	.	Parent=Os01t0550850-00
Chr01	irgsp1_rep	mRNA	20651659	20654948	.	+	.	ID=Os01t0550900-00;Name=Os01t0550900-00;Locus_id=Os01g0550900;Note=Similar to carboxyl-terminal peptidase.;Transcript_evidence=FP095570 (DDBJ);ORF_evidence=NP_001152099.1 (RefSeq);InterPro=Glucoamylase%2C putatuve (IPR004314);TENOR=Os01t0550900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	20651659	20651720	.	+	.	Parent=Os01t0550900-00
Chr01	irgsp1_rep	five_prime_UTR	20651871	20651892	.	+	.	Parent=Os01t0550900-00
Chr01	irgsp1_rep	CDS	20651893	20651957	.	+	0	Parent=Os01t0550900-00
Chr01	irgsp1_rep	CDS	20652028	20652286	.	+	1	Parent=Os01t0550900-00
Chr01	irgsp1_rep	CDS	20652439	20652609	.	+	0	Parent=Os01t0550900-00
Chr01	irgsp1_rep	CDS	20653267	20653320	.	+	0	Parent=Os01t0550900-00
Chr01	irgsp1_rep	CDS	20653451	20653594	.	+	0	Parent=Os01t0550900-00
Chr01	irgsp1_rep	three_prime_UTR	20653595	20653597	.	+	.	Parent=Os01t0550900-00
Chr01	irgsp1_rep	three_prime_UTR	20654504	20654948	.	+	.	Parent=Os01t0550900-00
Chr01	irgsp1_rep	mRNA	20651869	20654847	.	-	.	ID=Os01t0550950-00;Name=Os01t0550950-00;Locus_id=Os01g0550950;Note=Hypothetical protein.;Transcript_evidence=tplb0062i11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0550950-00
Chr01	irgsp1_rep	five_prime_UTR	20654735	20654847	.	-	.	Parent=Os01t0550950-00
Chr01	irgsp1_rep	CDS	20654500	20654734	.	-	0	Parent=Os01t0550950-00
Chr01	irgsp1_rep	CDS	20653586	20653593	.	-	2	Parent=Os01t0550950-00
Chr01	irgsp1_rep	three_prime_UTR	20653466	20653585	.	-	.	Parent=Os01t0550950-00
Chr01	irgsp1_rep	three_prime_UTR	20652437	20652673	.	-	.	Parent=Os01t0550950-00
Chr01	irgsp1_rep	three_prime_UTR	20652072	20652299	.	-	.	Parent=Os01t0550950-00
Chr01	irgsp1_rep	three_prime_UTR	20651869	20651987	.	-	.	Parent=Os01t0550950-00
Chr01	irgsp1_rep	mRNA	20662993	20665013	.	+	.	ID=Os01t0551000-01;Name=Os01t0551000-01;Locus_id=Os01g0551000;Oryzabase Gene Name Synonym(s)=Conserved hypothetical protein;Note=Conserved hypothetical protein.;Transcript_evidence=AK071219 (DDBJ%2C Best hit),AK106034 (DDBJ%2C Best hit);ORF_evidence=B9EXH5 (UniProt);NIAS_FLcDNA=J023086F06,001-206-D06;Oryzabase=22047;TENOR=Os01t0551000-01
Chr01	irgsp1_rep	five_prime_UTR	20662993	20663085	.	+	.	Parent=Os01t0551000-01
Chr01	irgsp1_rep	CDS	20663086	20663916	.	+	0	Parent=Os01t0551000-01
Chr01	irgsp1_rep	CDS	20664623	20664667	.	+	0	Parent=Os01t0551000-01
Chr01	irgsp1_rep	three_prime_UTR	20664668	20665013	.	+	.	Parent=Os01t0551000-01
Chr01	irgsp1_rep	mRNA	20665550	20671003	.	-	.	ID=Os01t0551100-01;Name=Os01t0551100-01;Locus_id=Os01g0551100;Note=Ribonuclease III domain containing protein.;Transcript_evidence=AK067932 (DDBJ%2C Best hit);ORF_evidence=A2ZUA0 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Biological Process: rRNA catabolic process (GO:0016075),Molecular Function: RNA binding (GO:0003723),Molecular Function: ribonuclease III activity (GO:0004525);InterPro=Ribonuclease III (IPR000999),Ribonuclease III%2C bacterial (IPR011907);NIAS_FLcDNA=J013126J11;Expression=AK067932;TENOR=Os01t0551100-01;KEGG=Os01t0551100-01 (EC:3.1.26.3)
Chr01	irgsp1_rep	five_prime_UTR	20670917	20671003	.	-	.	Parent=Os01t0551100-01
Chr01	irgsp1_rep	CDS	20670530	20670916	.	-	0	Parent=Os01t0551100-01
Chr01	irgsp1_rep	CDS	20667070	20667210	.	-	0	Parent=Os01t0551100-01
Chr01	irgsp1_rep	CDS	20666741	20666983	.	-	0	Parent=Os01t0551100-01
Chr01	irgsp1_rep	three_prime_UTR	20666694	20666740	.	-	.	Parent=Os01t0551100-01
Chr01	irgsp1_rep	three_prime_UTR	20665550	20665942	.	-	.	Parent=Os01t0551100-01
Chr01	irgsp1_rep	mRNA	20700553	20702884	.	+	.	ID=Os01t0551400-00;Name=Os01t0551400-00;Locus_id=Os01g0551400;Note=Hypothetical conserved gene.;Transcript_evidence=CU406899 (DDBJ%2C Best hit);ORF_evidence=NP_001142808.1 (RefSeq);TENOR=Os01t0551400-00;KEGG=Os01t0551400-00
Chr01	irgsp1_rep	five_prime_UTR	20700553	20700664	.	+	.	Parent=Os01t0551400-00
Chr01	irgsp1_rep	CDS	20700665	20700798	.	+	0	Parent=Os01t0551400-00
Chr01	irgsp1_rep	CDS	20700899	20701020	.	+	1	Parent=Os01t0551400-00
Chr01	irgsp1_rep	CDS	20702530	20702549	.	+	2	Parent=Os01t0551400-00
Chr01	irgsp1_rep	three_prime_UTR	20702550	20702884	.	+	.	Parent=Os01t0551400-00
Chr01	irgsp1_rep	mRNA	20714138	20716704	.	+	.	ID=Os01t0551800-01;Name=Os01t0551800-01;Locus_id=Os01g0551800;Note=Similar to protein ABIL1.;Transcript_evidence=AK243249 (DDBJ%2C Best hit);ORF_evidence=NP_001150525.1 (RefSeq);NIAS_FLcDNA=J100047N06;TENOR=Os01t0551800-01;KEGG=Os01t0551800-01
Chr01	irgsp1_rep	five_prime_UTR	20714138	20714343	.	+	.	Parent=Os01t0551800-01
Chr01	irgsp1_rep	CDS	20714344	20714460	.	+	0	Parent=Os01t0551800-01
Chr01	irgsp1_rep	CDS	20714807	20714889	.	+	0	Parent=Os01t0551800-01
Chr01	irgsp1_rep	CDS	20715004	20715154	.	+	1	Parent=Os01t0551800-01
Chr01	irgsp1_rep	CDS	20715259	20715358	.	+	0	Parent=Os01t0551800-01
Chr01	irgsp1_rep	CDS	20715482	20715574	.	+	2	Parent=Os01t0551800-01
Chr01	irgsp1_rep	CDS	20715781	20715829	.	+	2	Parent=Os01t0551800-01
Chr01	irgsp1_rep	CDS	20715914	20716011	.	+	1	Parent=Os01t0551800-01
Chr01	irgsp1_rep	CDS	20716190	20716296	.	+	2	Parent=Os01t0551800-01
Chr01	irgsp1_rep	CDS	20716388	20716561	.	+	0	Parent=Os01t0551800-01
Chr01	irgsp1_rep	three_prime_UTR	20716562	20716704	.	+	.	Parent=Os01t0551800-01
Chr01	irgsp1_rep	mRNA	20717362	20722254	.	-	.	ID=Os01t0551900-01;Name=Os01t0551900-01;Locus_id=Os01g0551900;Oryzabase Gene Symbol Synonym(s)=OsWD40-15;Note=Similar to transducin family protein / WD-40 repeat family protein.;Transcript_evidence=AK105617 (DDBJ%2C Best hit);ORF_evidence=NP_182179.2 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=001-200-B12;Oryzabase=10696;TENOR=Os01t0551900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	20722254	20722254	.	-	.	Parent=Os01t0551900-01
Chr01	irgsp1_rep	CDS	20721762	20722253	.	-	0	Parent=Os01t0551900-01
Chr01	irgsp1_rep	CDS	20721619	20721675	.	-	0	Parent=Os01t0551900-01
Chr01	irgsp1_rep	CDS	20720325	20720753	.	-	0	Parent=Os01t0551900-01
Chr01	irgsp1_rep	CDS	20719329	20719552	.	-	0	Parent=Os01t0551900-01
Chr01	irgsp1_rep	CDS	20719112	20719245	.	-	1	Parent=Os01t0551900-01
Chr01	irgsp1_rep	CDS	20718186	20718446	.	-	2	Parent=Os01t0551900-01
Chr01	irgsp1_rep	CDS	20717934	20718112	.	-	2	Parent=Os01t0551900-01
Chr01	irgsp1_rep	CDS	20717692	20717805	.	-	0	Parent=Os01t0551900-01
Chr01	irgsp1_rep	three_prime_UTR	20717362	20717691	.	-	.	Parent=Os01t0551900-01
Chr01	irgsp1_rep	mRNA	20717034	20721677	.	-	.	ID=Os01t0551900-02;Name=Os01t0551900-02;Locus_id=Os01g0551900;Oryzabase Gene Symbol Synonym(s)=OsWD40-15;Note=Similar to predicted protein.;Transcript_evidence=AK111932 (DDBJ%2C Best hit);ORF_evidence=NP_182179.2 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=001-016-C12;Oryzabase=10696;Expression=AK111932;TENOR=Os01t0551900-02;KEGG=Os01t0551900-02
Chr01	irgsp1_rep	five_prime_UTR	20721676	20721677	.	-	.	Parent=Os01t0551900-02
Chr01	irgsp1_rep	CDS	20721619	20721675	.	-	0	Parent=Os01t0551900-02
Chr01	irgsp1_rep	CDS	20720325	20720753	.	-	0	Parent=Os01t0551900-02
Chr01	irgsp1_rep	CDS	20719329	20719552	.	-	0	Parent=Os01t0551900-02
Chr01	irgsp1_rep	CDS	20719112	20719245	.	-	1	Parent=Os01t0551900-02
Chr01	irgsp1_rep	CDS	20718186	20718446	.	-	2	Parent=Os01t0551900-02
Chr01	irgsp1_rep	CDS	20717934	20718112	.	-	2	Parent=Os01t0551900-02
Chr01	irgsp1_rep	CDS	20717692	20717805	.	-	0	Parent=Os01t0551900-02
Chr01	irgsp1_rep	three_prime_UTR	20717034	20717691	.	-	.	Parent=Os01t0551900-02
Chr01	irgsp1_rep	mRNA	20722370	20727207	.	-	.	ID=Os01t0552000-01;Name=Os01t0552000-01;Locus_id=Os01g0552000;Note=Hypothetical conserved gene.;Transcript_evidence=AK069650 (DDBJ%2C Best hit);ORF_evidence=B9EXH8 (UniProt);InterPro=RAVE protein 1 C-terminal (IPR022033);NIAS_FLcDNA=J023029P05;Expression=AK069650;TENOR=Os01t0552000-01;KEGG=Os01t0552000-01
Chr01	irgsp1_rep	CDS	20727042	20727207	.	-	0	Parent=Os01t0552000-01
Chr01	irgsp1_rep	CDS	20725617	20726058	.	-	2	Parent=Os01t0552000-01
Chr01	irgsp1_rep	CDS	20725218	20725446	.	-	1	Parent=Os01t0552000-01
Chr01	irgsp1_rep	CDS	20724753	20724764	.	-	0	Parent=Os01t0552000-01
Chr01	irgsp1_rep	three_prime_UTR	20724553	20724752	.	-	.	Parent=Os01t0552000-01
Chr01	irgsp1_rep	three_prime_UTR	20723980	20724252	.	-	.	Parent=Os01t0552000-01
Chr01	irgsp1_rep	three_prime_UTR	20723646	20723891	.	-	.	Parent=Os01t0552000-01
Chr01	irgsp1_rep	three_prime_UTR	20723159	20723527	.	-	.	Parent=Os01t0552000-01
Chr01	irgsp1_rep	three_prime_UTR	20722370	20723072	.	-	.	Parent=Os01t0552000-01
Chr01	irgsp1_rep	mRNA	20727509	20730085	.	+	.	ID=Os01t0552050-00;Name=Os01t0552050-00;Locus_id=Os01g0552050;Note=Hypothetical protein.;Transcript_evidence=tplb0024h10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0552050-00
Chr01	irgsp1_rep	five_prime_UTR	20727509	20728810	.	+	.	Parent=Os01t0552050-00
Chr01	irgsp1_rep	CDS	20728811	20729251	.	+	0	Parent=Os01t0552050-00
Chr01	irgsp1_rep	three_prime_UTR	20729252	20729620	.	+	.	Parent=Os01t0552050-00
Chr01	irgsp1_rep	three_prime_UTR	20729718	20730085	.	+	.	Parent=Os01t0552050-00
Chr01	irgsp1_rep	mRNA	20731129	20731413	.	-	.	ID=Os01t0552100-01;Name=Os01t0552100-01;Locus_id=Os01g0552100;Note=Non-protein coding transcript.;Transcript_evidence=AK058701 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-019-C04;TENOR=Os01t0552100-01
Chr01	irgsp1_rep	exon	20731129	20731413	.	-	.	Parent=Os01t0552100-01
Chr01	irgsp1_rep	mRNA	20738654	20742427	.	+	.	ID=Os01t0552300-01;Name=Os01t0552300-01;Locus_id=Os01g0552300;Oryzabase Gene Symbol Synonym(s)=OsPP2C05%2C PP2C05%2C OsPP2C5%2C PP2C5%2C OsPP9%2C PPH1%2C TAP38%2C PPH1/TAP38;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C05%2C protein phosphatase 2C 05%2C protein phosphatase 2C5%2C protein phosphatase 2C 5%2C protein phosphatase 9;Note=Similar to Protein phosphatase-2C.;Transcript_evidence=AK106278 (DDBJ%2C Best hit);ORF_evidence=A4GWU9 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=002-100-H07;Oryzabase=17884;Expression=AK106278;TENOR=Os01t0552300-01;KEGG=Os01t0552300-01
Chr01	irgsp1_rep	five_prime_UTR	20738654	20738656	.	+	.	Parent=Os01t0552300-01
Chr01	irgsp1_rep	CDS	20738657	20738964	.	+	0	Parent=Os01t0552300-01
Chr01	irgsp1_rep	CDS	20739047	20739178	.	+	1	Parent=Os01t0552300-01
Chr01	irgsp1_rep	CDS	20739638	20739740	.	+	1	Parent=Os01t0552300-01
Chr01	irgsp1_rep	CDS	20739904	20740017	.	+	0	Parent=Os01t0552300-01
Chr01	irgsp1_rep	CDS	20740507	20740586	.	+	0	Parent=Os01t0552300-01
Chr01	irgsp1_rep	CDS	20740696	20740749	.	+	1	Parent=Os01t0552300-01
Chr01	irgsp1_rep	CDS	20741270	20741386	.	+	1	Parent=Os01t0552300-01
Chr01	irgsp1_rep	CDS	20741510	20741564	.	+	1	Parent=Os01t0552300-01
Chr01	irgsp1_rep	CDS	20741658	20741690	.	+	0	Parent=Os01t0552300-01
Chr01	irgsp1_rep	CDS	20741826	20741872	.	+	0	Parent=Os01t0552300-01
Chr01	irgsp1_rep	CDS	20742111	20742237	.	+	1	Parent=Os01t0552300-01
Chr01	irgsp1_rep	three_prime_UTR	20742238	20742427	.	+	.	Parent=Os01t0552300-01
Chr01	irgsp1_rep	mRNA	20746733	20750441	.	-	.	ID=Os01t0552500-01;Name=Os01t0552500-01;Locus_id=Os01g0552500;Note=Conserved hypothetical protein.;Transcript_evidence=AK068070 (DDBJ%2C Best hit);ORF_evidence=Q84TW1 (UniProt);NIAS_FLcDNA=J013132E15;TENOR=Os01t0552500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	20750441	20750441	.	-	.	Parent=Os01t0552500-01
Chr01	irgsp1_rep	CDS	20750012	20750440	.	-	0	Parent=Os01t0552500-01
Chr01	irgsp1_rep	three_prime_UTR	20749737	20750011	.	-	.	Parent=Os01t0552500-01
Chr01	irgsp1_rep	three_prime_UTR	20749424	20749522	.	-	.	Parent=Os01t0552500-01
Chr01	irgsp1_rep	three_prime_UTR	20749255	20749361	.	-	.	Parent=Os01t0552500-01
Chr01	irgsp1_rep	three_prime_UTR	20747983	20748185	.	-	.	Parent=Os01t0552500-01
Chr01	irgsp1_rep	three_prime_UTR	20746733	20747073	.	-	.	Parent=Os01t0552500-01
Chr01	irgsp1_rep	mRNA	20783516	20785479	.	+	.	ID=Os01t0552850-01;Name=Os01t0552850-01;Locus_id=Os01g0552850;Note=Similar to E3 SUMO-protein ligase SIZ2.;Transcript_evidence=AK121579 (DDBJ%2C Best hit);ORF_evidence=Q6ASW7 (UniProt);NIAS_FLcDNA=J033036N21;TENOR=Os01t0552850-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	20783516	20783586	.	+	.	Parent=Os01t0552850-01
Chr01	irgsp1_rep	CDS	20783587	20783724	.	+	0	Parent=Os01t0552850-01
Chr01	irgsp1_rep	three_prime_UTR	20783725	20784176	.	+	.	Parent=Os01t0552850-01
Chr01	irgsp1_rep	three_prime_UTR	20784624	20785479	.	+	.	Parent=Os01t0552850-01
Chr01	irgsp1_rep	mRNA	20783752	20785176	.	-	.	ID=Os01t0553200-00;Name=Os01t0553200-00;Locus_id=Os01g0553200;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2ZUA7 (UniProt);TENOR=Os01t0553200-00;KEGG=Os01t0553200-00
Chr01	irgsp1_rep	CDS	20784624	20785176	.	-	0	Parent=Os01t0553200-00
Chr01	irgsp1_rep	CDS	20783752	20784176	.	-	2	Parent=Os01t0553200-00
Chr01	irgsp1_rep	mRNA	20805805	20810162	.	+	.	ID=Os01t0553400-01;Name=Os01t0553400-01;Locus_id=Os01g0553400;Oryzabase Gene Symbol Synonym(s)=OsFbox017%2C OsFbox17%2C Os_F0392;Oryzabase Gene Name Synonym(s)=F-box protein 17;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK102543 (DDBJ%2C Best hit);ORF_evidence=Q5JKM5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),FBD (IPR013596),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033096M08;Oryzabase=16820;Expression=AK102543;TENOR=Os01t0553400-01;KEGG=Os01t0553400-01
Chr01	irgsp1_rep	five_prime_UTR	20805805	20806069	.	+	.	Parent=Os01t0553400-01
Chr01	irgsp1_rep	five_prime_UTR	20806887	20806903	.	+	.	Parent=Os01t0553400-01
Chr01	irgsp1_rep	CDS	20806904	20807044	.	+	0	Parent=Os01t0553400-01
Chr01	irgsp1_rep	CDS	20807125	20807979	.	+	0	Parent=Os01t0553400-01
Chr01	irgsp1_rep	CDS	20808082	20808240	.	+	0	Parent=Os01t0553400-01
Chr01	irgsp1_rep	CDS	20809785	20810069	.	+	0	Parent=Os01t0553400-01
Chr01	irgsp1_rep	three_prime_UTR	20810070	20810162	.	+	.	Parent=Os01t0553400-01
Chr01	irgsp1_rep	mRNA	20816985	20820444	.	+	.	ID=Os01t0553600-01;Name=Os01t0553600-01;Locus_id=Os01g0553600;Note=Conserved hypothetical protein.;Transcript_evidence=AK121792 (DDBJ%2C Best hit);ORF_evidence=B9EXI1 (UniProt);NIAS_FLcDNA=J033095E18;TENOR=Os01t0553600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	20816985	20817148	.	+	.	Parent=Os01t0553600-01
Chr01	irgsp1_rep	five_prime_UTR	20817269	20817275	.	+	.	Parent=Os01t0553600-01
Chr01	irgsp1_rep	CDS	20817276	20817530	.	+	0	Parent=Os01t0553600-01
Chr01	irgsp1_rep	three_prime_UTR	20817531	20819965	.	+	.	Parent=Os01t0553600-01
Chr01	irgsp1_rep	three_prime_UTR	20820050	20820444	.	+	.	Parent=Os01t0553600-01
Chr01	irgsp1_rep	mRNA	20838837	20842954	.	-	.	ID=Os01t0553901-01;Name=Os01t0553901-01;Locus_id=Os01g0553901;Note=HGWP repeat domain containing protein.;Transcript_evidence=AK288464 (DDBJ%2C Best hit);ORF_evidence=Q6YWG6 (UniProt);InterPro=HGWP repeat (IPR005213);NIAS_FLcDNA=J090036L03;TENOR=Os01t0553901-01;KEGG=Os01t0553901-01
Chr01	irgsp1_rep	five_prime_UTR	20840605	20842954	.	-	.	Parent=Os01t0553901-01
Chr01	irgsp1_rep	CDS	20839585	20840604	.	-	0	Parent=Os01t0553901-01
Chr01	irgsp1_rep	three_prime_UTR	20838837	20839584	.	-	.	Parent=Os01t0553901-01
Chr01	irgsp1_rep	mRNA	20870047	20870923	.	+	.	ID=Os01t0554150-00;Name=Os01t0554150-00;Locus_id=Os01g0554150;Note=Transposase%2C MuDR%2C plant domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=XP_002462051.1 (RefSeq);InterPro=Transposase%2C MuDR%2C plant (IPR004332);TENOR=Os01t0554150-00
Chr01	irgsp1_rep	CDS	20870047	20870065	.	+	0	Parent=Os01t0554150-00
Chr01	irgsp1_rep	CDS	20870141	20870565	.	+	2	Parent=Os01t0554150-00
Chr01	irgsp1_rep	CDS	20870644	20870817	.	+	0	Parent=Os01t0554150-00
Chr01	irgsp1_rep	CDS	20870843	20870923	.	+	0	Parent=Os01t0554150-00
Chr01	irgsp1_rep	mRNA	20873688	20875861	.	+	.	ID=Os01t0554400-01;Name=Os01t0554400-01;Locus_id=Os01g0554400;Note=Non-protein coding transcript.;Transcript_evidence=AK064431 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-110-D01;TENOR=Os01t0554400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	exon	20873688	20873787	.	+	.	Parent=Os01t0554400-01
Chr01	irgsp1_rep	exon	20874468	20875491	.	+	.	Parent=Os01t0554400-01
Chr01	irgsp1_rep	exon	20875595	20875861	.	+	.	Parent=Os01t0554400-01
Chr01	irgsp1_rep	mRNA	20935789	20937436	.	+	.	ID=Os01t0555100-01;Name=Os01t0555100-01;Locus_id=Os01g0555100;Oryzabase Gene Symbol Synonym(s)=SRZ3;Oryzabase Gene Name Synonym(s)=stress repressive zinc finger protein 3;Note=Similar to TATA-binding protein associated factor 2N (RNA-binding protein 56) (TAFII68) (TAF(II)68).;Transcript_evidence=AK111255 (DDBJ%2C Best hit);ORF_evidence=A2WRB0 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RanBP2-type (IPR001876);NIAS_FLcDNA=002-180-E06;Oryzabase=15132;Expression=AK111255;TENOR=Os01t0555100-01;KEGG=Os01t0555100-01
Chr01	irgsp1_rep	five_prime_UTR	20935789	20936019	.	+	.	Parent=Os01t0555100-01
Chr01	irgsp1_rep	CDS	20936020	20936360	.	+	0	Parent=Os01t0555100-01
Chr01	irgsp1_rep	CDS	20936966	20937036	.	+	1	Parent=Os01t0555100-01
Chr01	irgsp1_rep	CDS	20937149	20937156	.	+	2	Parent=Os01t0555100-01
Chr01	irgsp1_rep	three_prime_UTR	20937157	20937436	.	+	.	Parent=Os01t0555100-01
Chr01	irgsp1_rep	mRNA	20938340	20941280	.	-	.	ID=Os01t0555200-01;Name=Os01t0555200-01;Locus_id=Os01g0555200;Note=Asp/Glu racemase family protein.;Transcript_evidence=AK067541 (DDBJ%2C Best hit);ORF_evidence=B6TUV7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: racemase and epimerase activity%2C acting on amino acids and derivatives (GO:0016855);InterPro=Asp/Glu racemase (IPR001920),Asp/Glu/hydantoin racemase (IPR015942);NIAS_FLcDNA=J013111D09;Expression=AK067541;TENOR=Os01t0555200-01;KEGG=Os01t0555200-01
Chr01	irgsp1_rep	five_prime_UTR	20941107	20941280	.	-	.	Parent=Os01t0555200-01
Chr01	irgsp1_rep	CDS	20941084	20941106	.	-	0	Parent=Os01t0555200-01
Chr01	irgsp1_rep	CDS	20940293	20940977	.	-	1	Parent=Os01t0555200-01
Chr01	irgsp1_rep	CDS	20939437	20939718	.	-	0	Parent=Os01t0555200-01
Chr01	irgsp1_rep	three_prime_UTR	20938340	20939436	.	-	.	Parent=Os01t0555200-01
Chr01	irgsp1_rep	mRNA	20942303	20945721	.	-	.	ID=Os01t0555300-01;Name=Os01t0555300-01;Locus_id=Os01g0555300;Note=Conserved hypothetical protein.;Transcript_evidence=AK068308 (DDBJ%2C Best hit);ORF_evidence=B8AA24 (UniProt);NIAS_FLcDNA=J013146J22;Expression=AK068308;TENOR=Os01t0555300-01;KEGG=Os01t0555300-01
Chr01	irgsp1_rep	five_prime_UTR	20945688	20945721	.	-	.	Parent=Os01t0555300-01
Chr01	irgsp1_rep	CDS	20945488	20945687	.	-	0	Parent=Os01t0555300-01
Chr01	irgsp1_rep	CDS	20942880	20943111	.	-	1	Parent=Os01t0555300-01
Chr01	irgsp1_rep	CDS	20942488	20942784	.	-	0	Parent=Os01t0555300-01
Chr01	irgsp1_rep	three_prime_UTR	20942303	20942487	.	-	.	Parent=Os01t0555300-01
Chr01	irgsp1_rep	mRNA	20950664	20951670	.	-	.	ID=Os01t0555600-00;Name=Os01t0555600-00;Locus_id=Os01g0555600;Note=Dynein light chain%2C type 1 family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B6U3L9 (UniProt);GO=Biological Process: microtubule-based process (GO:0007017),Cellular Component: microtubule associated complex (GO:0005875);InterPro=Dynein light chain%2C type 1/2 (IPR001372);TENOR=Os01t0555600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	20951191	20951670	.	-	0	Parent=Os01t0555600-00
Chr01	irgsp1_rep	CDS	20950664	20950825	.	-	0	Parent=Os01t0555600-00
Chr01	irgsp1_rep	mRNA	20953961	20954922	.	-	.	ID=Os01t0555800-01;Name=Os01t0555800-01;Locus_id=Os01g0555800;Oryzabase Gene Symbol Synonym(s)=OsPDF1A;Oryzabase Gene Name Synonym(s)=peptide deformylase 1A;Note=Formylmethionine deformylase family protein.;Transcript_evidence=AK062551 (DDBJ%2C Best hit);ORF_evidence=B6RGY0 (UniProt);GO=Molecular Function: iron ion binding (GO:0005506),Molecular Function: peptide deformylase activity (GO:0042586);InterPro=Formylmethionine deformylase (IPR000181),Peptide deformylase (IPR023635);NIAS_FLcDNA=001-104-H02;Oryzabase=14267;Expression=AK062551;TENOR=Os01t0555800-01;KEGG=Os01t0555800-01
Chr01	irgsp1_rep	five_prime_UTR	20954922	20954922	.	-	.	Parent=Os01t0555800-01
Chr01	irgsp1_rep	CDS	20954865	20954921	.	-	0	Parent=Os01t0555800-01
Chr01	irgsp1_rep	CDS	20954686	20954753	.	-	0	Parent=Os01t0555800-01
Chr01	irgsp1_rep	CDS	20954342	20954582	.	-	1	Parent=Os01t0555800-01
Chr01	irgsp1_rep	three_prime_UTR	20953961	20954341	.	-	.	Parent=Os01t0555800-01
Chr01	irgsp1_rep	mRNA	20957411	20958019	.	-	.	ID=Os01t0556001-00;Name=Os01t0556001-00;Locus_id=Os01g0556001;Note=Hypothetical conserved gene.;Transcript_evidence=EU964213 (DDBJ);ORF_evidence=Q5JKS1 (UniProt);TENOR=Os01t0556001-00;KEGG=Os01t0556001-00
Chr01	irgsp1_rep	CDS	20957411	20958019	.	-	0	Parent=Os01t0556001-00
Chr01	irgsp1_rep	mRNA	20988504	20992381	.	-	.	ID=Os01t0556201-00;Name=Os01t0556201-00;Locus_id=Os01g0556201;Note=Hypothetical gene.;Transcript_evidence=BT016873 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0556201-00;KEGG=Os01t0556201-00
Chr01	irgsp1_rep	five_prime_UTR	20992036	20992381	.	-	.	Parent=Os01t0556201-00
Chr01	irgsp1_rep	five_prime_UTR	20989003	20989397	.	-	.	Parent=Os01t0556201-00
Chr01	irgsp1_rep	CDS	20988559	20989002	.	-	0	Parent=Os01t0556201-00
Chr01	irgsp1_rep	three_prime_UTR	20988504	20988558	.	-	.	Parent=Os01t0556201-00
Chr01	irgsp1_rep	mRNA	20987876	20992377	.	+	.	ID=Os01t0556400-01;Name=Os01t0556400-01;Locus_id=Os01g0556400;Oryzabase Gene Symbol Synonym(s)=OsDjC9;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C9;Note=Heat shock protein DnaJ family protein.;Transcript_evidence=AK243505 (DDBJ%2C Best hit);ORF_evidence=B6TUY9 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Domain of unknown function DUF1977%2C DnaJ-like (IPR015399),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=J100074N19;Oryzabase=12166;TENOR=Os01t0556400-01;KEGG=Os01t0556400-01
Chr01	irgsp1_rep	five_prime_UTR	20987876	20987989	.	+	.	Parent=Os01t0556400-01
Chr01	irgsp1_rep	five_prime_UTR	20988110	20988225	.	+	.	Parent=Os01t0556400-01
Chr01	irgsp1_rep	CDS	20988226	20989368	.	+	0	Parent=Os01t0556400-01
Chr01	irgsp1_rep	three_prime_UTR	20989369	20989386	.	+	.	Parent=Os01t0556400-01
Chr01	irgsp1_rep	three_prime_UTR	20992030	20992377	.	+	.	Parent=Os01t0556400-01
Chr01	irgsp1_rep	mRNA	21039083	21040738	.	-	.	ID=Os01t0556650-00;Name=Os01t0556650-00;Locus_id=Os01g0556650;Note=Hypothetical protein.;Transcript_evidence=tplb0061c10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0556650-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	21040738	21040738	.	-	.	Parent=Os01t0556650-00
Chr01	irgsp1_rep	CDS	21039083	21040737	.	-	0	Parent=Os01t0556650-00
Chr01	irgsp1_rep	mRNA	21040111	21041071	.	+	.	ID=Os01t0556700-00;Name=Os01t0556700-00;Locus_id=Os01g0556700;CGSNL Gene Symbol=NRT1.4;CGSNL Gene Name=NITRATE TRANSPORTER 1.4;Oryzabase Gene Symbol Synonym(s)=OsNRT1.4;Oryzabase Gene Name Synonym(s)=nitrate transporter 1.4;Note=Hypothetical conserved gene.;Transcript_evidence=CT835015 (DDBJ%2C Best hit);ORF_evidence=NP_001043326.1 (RefSeq);Oryzabase=19901;TENOR=Os01t0556700-00;KEGG=Os01t0556700-00
Chr01	irgsp1_rep	CDS	21040111	21040231	.	+	0	Parent=Os01t0556700-00
Chr01	irgsp1_rep	CDS	21040643	21040821	.	+	2	Parent=Os01t0556700-00
Chr01	irgsp1_rep	three_prime_UTR	21040822	21041071	.	+	.	Parent=Os01t0556700-00
Chr01	irgsp1_rep	mRNA	21041870	21046818	.	-	.	ID=Os01t0556800-00;Name=Os01t0556800-00;Locus_id=Os01g0556800;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001172418.1 (RefSeq);GO=Molecular Function: RNA binding (GO:0003723);InterPro=Protein of unknown function DUF724 (IPR007930),Agenet (IPR008395),Tudor-like%2C plant (IPR014002);TENOR=Os01t0556800-00;KEGG=Os01t0556800-00
Chr01	irgsp1_rep	CDS	21046276	21046818	.	-	0	Parent=Os01t0556800-00
Chr01	irgsp1_rep	CDS	21044574	21044996	.	-	0	Parent=Os01t0556800-00
Chr01	irgsp1_rep	CDS	21044232	21044357	.	-	0	Parent=Os01t0556800-00
Chr01	irgsp1_rep	CDS	21043815	21043934	.	-	0	Parent=Os01t0556800-00
Chr01	irgsp1_rep	CDS	21043372	21043566	.	-	0	Parent=Os01t0556800-00
Chr01	irgsp1_rep	CDS	21043249	21043288	.	-	0	Parent=Os01t0556800-00
Chr01	irgsp1_rep	CDS	21042892	21043145	.	-	2	Parent=Os01t0556800-00
Chr01	irgsp1_rep	CDS	21041870	21042268	.	-	0	Parent=Os01t0556800-00
Chr01	irgsp1_rep	mRNA	21056832	21058033	.	-	.	ID=Os01t0557100-01;Name=Os01t0557100-01;Locus_id=Os01g0557100;Note=Alpha/beta hydrolase family protein.;Transcript_evidence=AK287842 (DDBJ%2C Best hit);ORF_evidence=NP_001043328.1 (RefSeq);NIAS_FLcDNA=J065194J09;TENOR=Os01t0557100-01;KEGG=Os01t0557100-01
Chr01	irgsp1_rep	five_prime_UTR	21057974	21058033	.	-	.	Parent=Os01t0557100-01
Chr01	irgsp1_rep	CDS	21057572	21057973	.	-	0	Parent=Os01t0557100-01
Chr01	irgsp1_rep	CDS	21057052	21057447	.	-	0	Parent=Os01t0557100-01
Chr01	irgsp1_rep	three_prime_UTR	21056832	21057051	.	-	.	Parent=Os01t0557100-01
Chr01	irgsp1_rep	mRNA	21062727	21063681	.	-	.	ID=Os01t0557200-00;Name=Os01t0557200-00;Locus_id=Os01g0557200;Note=Conserved hypothetical protein.;Transcript_evidence=EU972429 (DDBJ);ORF_evidence=Q8S0U8 (UniProt);TENOR=Os01t0557200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	21063103	21063681	.	-	0	Parent=Os01t0557200-00
Chr01	irgsp1_rep	CDS	21062729	21063010	.	-	0	Parent=Os01t0557200-00
Chr01	irgsp1_rep	three_prime_UTR	21062727	21062728	.	-	.	Parent=Os01t0557200-00
Chr01	irgsp1_rep	mRNA	21068507	21070184	.	+	.	ID=Os01t0557400-01;Name=Os01t0557400-01;Locus_id=Os01g0557400;Oryzabase Gene Symbol Synonym(s)=OsFbox018%2C OsFbox18%2C Os_F0259;Oryzabase Gene Name Synonym(s)=F-box protein 18;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK107049 (DDBJ%2C Best hit);ORF_evidence=A2WRC4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-121-C12;Oryzabase=16821;Expression=AK107049;TENOR=Os01t0557400-01;KEGG=Os01t0557400-01
Chr01	irgsp1_rep	five_prime_UTR	21068507	21068582	.	+	.	Parent=Os01t0557400-01
Chr01	irgsp1_rep	CDS	21068583	21069896	.	+	0	Parent=Os01t0557400-01
Chr01	irgsp1_rep	three_prime_UTR	21069897	21070184	.	+	.	Parent=Os01t0557400-01
Chr01	irgsp1_rep	mRNA	21071497	21076720	.	-	.	ID=Os01t0557500-01;Name=Os01t0557500-01;Locus_id=Os01g0557500;CGSNL Gene Symbol=CAX1A;CGSNL Gene Name=Ca(2+)/H(+) EXCHANGER 1A;Oryzabase Gene Symbol Synonym(s)=OsCAX1a%2C CAX1a%2C CAX1%2C OsCAX1%2C OsNCX2%2C OsNCX2.1%2C OsNCX2.2%2C NCX2%2C OsVCAX1a;Oryzabase Gene Name Synonym(s)=Vacuolar cation/proton exchanger 1a%2C Ca(2+)/H(+) exchanger 1a%2C cation/H+ exchanger 1a%2C cation/proton exchanger 1a%2C cation/H exchanger 1a%2C Na+/Ca2+ Exchanger 2%2C Sodium/Calcium exchanger 2;Note=Cation/proton exchanger 1a.;Transcript_evidence=AK100765 (DDBJ%2C Best hit);ORF_evidence=Q769E5 (UniProt);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: cation transmembrane transporter activity (GO:0008324);InterPro=Calcium/proton exchanger (IPR004713),Calcium/proton exchanger superfamily (IPR004798),Sodium/calcium exchanger membrane region (IPR004837);NIAS_FLcDNA=J023119J24;Oryzabase=7274;Expression=AK100765;TENOR=Os01t0557500-01;KEGG=Os01t0557500-01
Chr01	irgsp1_rep	five_prime_UTR	21076530	21076720	.	-	.	Parent=Os01t0557500-01
Chr01	irgsp1_rep	CDS	21076272	21076529	.	-	0	Parent=Os01t0557500-01
Chr01	irgsp1_rep	CDS	21074466	21074533	.	-	0	Parent=Os01t0557500-01
Chr01	irgsp1_rep	CDS	21074335	21074363	.	-	1	Parent=Os01t0557500-01
Chr01	irgsp1_rep	CDS	21073224	21073894	.	-	2	Parent=Os01t0557500-01
Chr01	irgsp1_rep	CDS	21073056	21073109	.	-	0	Parent=Os01t0557500-01
Chr01	irgsp1_rep	CDS	21072845	21072961	.	-	0	Parent=Os01t0557500-01
Chr01	irgsp1_rep	CDS	21072613	21072703	.	-	0	Parent=Os01t0557500-01
Chr01	irgsp1_rep	CDS	21072465	21072532	.	-	2	Parent=Os01t0557500-01
Chr01	irgsp1_rep	three_prime_UTR	21072462	21072464	.	-	.	Parent=Os01t0557500-01
Chr01	irgsp1_rep	three_prime_UTR	21071497	21071907	.	-	.	Parent=Os01t0557500-01
Chr01	irgsp1_rep	mRNA	21072600	21073926	.	+	.	ID=Os01t0557550-00;Name=Os01t0557550-00;Locus_id=Os01g0557550;Note=Hypothetical protein.;Transcript_evidence=AK368409 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0557550-00
Chr01	irgsp1_rep	five_prime_UTR	21072600	21072685	.	+	.	Parent=Os01t0557550-00
Chr01	irgsp1_rep	five_prime_UTR	21072851	21073062	.	+	.	Parent=Os01t0557550-00
Chr01	irgsp1_rep	CDS	21073063	21073106	.	+	0	Parent=Os01t0557550-00
Chr01	irgsp1_rep	CDS	21073227	21073521	.	+	1	Parent=Os01t0557550-00
Chr01	irgsp1_rep	three_prime_UTR	21073522	21073926	.	+	.	Parent=Os01t0557550-00
Chr01	irgsp1_rep	mRNA	21114757	21115731	.	-	.	ID=Os01t0558100-01;Name=Os01t0558100-01;Locus_id=Os01g0558100;CGSNL Gene Symbol=GSTU6;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 6;Oryzabase Gene Symbol Synonym(s)=OsGSTU6;Note=Similar to Glutathione S-transferase TSI-1 (EC 2.5.1.18) (Glutathione S- transferase 1).;Transcript_evidence=AK111021 (DDBJ%2C Best hit);ORF_evidence=NP_001152229.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=002-174-G10;Oryzabase=9524;Expression=AK111021;TENOR=Os01t0558100-01;KEGG=Os01t0558100-01 (EC:2.5.1.18)
Chr01	irgsp1_rep	five_prime_UTR	21115691	21115731	.	-	.	Parent=Os01t0558100-01
Chr01	irgsp1_rep	CDS	21114938	21115690	.	-	0	Parent=Os01t0558100-01
Chr01	irgsp1_rep	three_prime_UTR	21114757	21114937	.	-	.	Parent=Os01t0558100-01
Chr01	irgsp1_rep	mRNA	21118894	21124700	.	+	.	ID=Os01t0558200-01;Name=Os01t0558200-01;Locus_id=Os01g0558200;Note=Glutamate/phenylalanine/leucine/valine dehydrogenase domain containing protein.;Transcript_evidence=AK120139 (DDBJ%2C Best hit);ORF_evidence=XP_002455794.1 (RefSeq);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Glutamate/phenylalanine/leucine/valine dehydrogenase (IPR006095),Glutamate/phenylalanine/leucine/valine dehydrogenase%2C C-terminal (IPR006096),Glutamate/phenylalanine/leucine/valine dehydrogenase%2C dimerisation domain (IPR006097),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013027M08;TENOR=Os01t0558200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	21118894	21119136	.	+	.	Parent=Os01t0558200-01
Chr01	irgsp1_rep	CDS	21119137	21119851	.	+	0	Parent=Os01t0558200-01
Chr01	irgsp1_rep	CDS	21120361	21120487	.	+	2	Parent=Os01t0558200-01
Chr01	irgsp1_rep	CDS	21120573	21120774	.	+	1	Parent=Os01t0558200-01
Chr01	irgsp1_rep	CDS	21121350	21121436	.	+	0	Parent=Os01t0558200-01
Chr01	irgsp1_rep	CDS	21121512	21121571	.	+	0	Parent=Os01t0558200-01
Chr01	irgsp1_rep	CDS	21121690	21121776	.	+	0	Parent=Os01t0558200-01
Chr01	irgsp1_rep	CDS	21122341	21122412	.	+	0	Parent=Os01t0558200-01
Chr01	irgsp1_rep	CDS	21122565	21122620	.	+	0	Parent=Os01t0558200-01
Chr01	irgsp1_rep	CDS	21122702	21122787	.	+	1	Parent=Os01t0558200-01
Chr01	irgsp1_rep	CDS	21123317	21123407	.	+	2	Parent=Os01t0558200-01
Chr01	irgsp1_rep	CDS	21123483	21123640	.	+	1	Parent=Os01t0558200-01
Chr01	irgsp1_rep	CDS	21123717	21123808	.	+	2	Parent=Os01t0558200-01
Chr01	irgsp1_rep	CDS	21124000	21124080	.	+	0	Parent=Os01t0558200-01
Chr01	irgsp1_rep	CDS	21124172	21124245	.	+	0	Parent=Os01t0558200-01
Chr01	irgsp1_rep	CDS	21124331	21124406	.	+	1	Parent=Os01t0558200-01
Chr01	irgsp1_rep	three_prime_UTR	21124407	21124700	.	+	.	Parent=Os01t0558200-01
Chr01	irgsp1_rep	mRNA	21124944	21128357	.	-	.	ID=Os01t0558300-01;Name=Os01t0558300-01;Locus_id=Os01g0558300;Note=RWD domain containing protein.;Transcript_evidence=AK065132 (DDBJ%2C Best hit);ORF_evidence=NP_001151191.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=RWD domain (IPR006575),Ubiquitin-conjugating enzyme/RWD-like (IPR016135);NIAS_FLcDNA=J013001P15;Expression=AK065132;TENOR=Os01t0558300-01;KEGG=Os01t0558300-01
Chr01	irgsp1_rep	five_prime_UTR	21128152	21128357	.	-	.	Parent=Os01t0558300-01
Chr01	irgsp1_rep	CDS	21128145	21128151	.	-	0	Parent=Os01t0558300-01
Chr01	irgsp1_rep	CDS	21127947	21128012	.	-	2	Parent=Os01t0558300-01
Chr01	irgsp1_rep	CDS	21127740	21127807	.	-	2	Parent=Os01t0558300-01
Chr01	irgsp1_rep	CDS	21127533	21127566	.	-	0	Parent=Os01t0558300-01
Chr01	irgsp1_rep	CDS	21127338	21127407	.	-	2	Parent=Os01t0558300-01
Chr01	irgsp1_rep	CDS	21127143	21127200	.	-	1	Parent=Os01t0558300-01
Chr01	irgsp1_rep	CDS	21126369	21126497	.	-	0	Parent=Os01t0558300-01
Chr01	irgsp1_rep	CDS	21125921	21126012	.	-	0	Parent=Os01t0558300-01
Chr01	irgsp1_rep	CDS	21125698	21125782	.	-	1	Parent=Os01t0558300-01
Chr01	irgsp1_rep	CDS	21125346	21125418	.	-	0	Parent=Os01t0558300-01
Chr01	irgsp1_rep	CDS	21125179	21125240	.	-	2	Parent=Os01t0558300-01
Chr01	irgsp1_rep	three_prime_UTR	21124944	21125178	.	-	.	Parent=Os01t0558300-01
Chr01	irgsp1_rep	mRNA	21138870	21143094	.	+	.	ID=Os01t0558500-01;Name=Os01t0558500-01;Locus_id=Os01g0558500;Note=PWWP domain containing protein.;Transcript_evidence=AK099982 (DDBJ%2C Best hit);ORF_evidence=A2WRD3 (UniProt);InterPro=PWWP (IPR000313);NIAS_FLcDNA=J013129G24;Expression=AK099982;TENOR=Os01t0558500-01;KEGG=Os01t0558500-01
Chr01	irgsp1_rep	five_prime_UTR	21138870	21139139	.	+	.	Parent=Os01t0558500-01
Chr01	irgsp1_rep	CDS	21139140	21139357	.	+	0	Parent=Os01t0558500-01
Chr01	irgsp1_rep	CDS	21140355	21141403	.	+	1	Parent=Os01t0558500-01
Chr01	irgsp1_rep	CDS	21141795	21142852	.	+	2	Parent=Os01t0558500-01
Chr01	irgsp1_rep	three_prime_UTR	21142853	21143094	.	+	.	Parent=Os01t0558500-01
Chr01	irgsp1_rep	mRNA	21140674	21143070	.	+	.	ID=Os01t0558500-02;Name=Os01t0558500-02;Locus_id=Os01g0558500;Note=Hypothetical conserved gene.;Transcript_evidence=AK105731 (DDBJ%2C Best hit);ORF_evidence=A2WRD3 (UniProt);NIAS_FLcDNA=001-201-H05;Expression=AK105731;TENOR=Os01t0558500-02;KEGG=Os01t0558500-02
Chr01	irgsp1_rep	CDS	21140674	21141403	.	+	0	Parent=Os01t0558500-02
Chr01	irgsp1_rep	CDS	21141795	21142852	.	+	2	Parent=Os01t0558500-02
Chr01	irgsp1_rep	three_prime_UTR	21142853	21143070	.	+	.	Parent=Os01t0558500-02
Chr01	irgsp1_rep	mRNA	21143578	21146346	.	-	.	ID=Os01t0558600-01;Name=Os01t0558600-01;Locus_id=Os01g0558600;Oryzabase Gene Symbol Synonym(s)=OsRab1B2%2C OsRas1;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab1B2%2C Ras related protein 1;Note=Ras-related protein RIC1.;Transcript_evidence=AK243597 (DDBJ%2C Best hit);ORF_evidence=P40392 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: intracellular protein transport (GO:0006886),Biological Process: nucleocytoplasmic transport (GO:0006913),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Cellular Component: membrane (GO:0016020),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Ran GTPase (IPR002041),Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C Ras type (IPR020849),Small GTPase superfamily%2C ARF type (IPR024156);NIAS_FLcDNA=J100084E08;Oryzabase=11072;TENOR=Os01t0558600-01;KEGG=Os01t0558600-01
Chr01	irgsp1_rep	five_prime_UTR	21146237	21146346	.	-	.	Parent=Os01t0558600-01
Chr01	irgsp1_rep	CDS	21146223	21146236	.	-	0	Parent=Os01t0558600-01
Chr01	irgsp1_rep	CDS	21145697	21145769	.	-	1	Parent=Os01t0558600-01
Chr01	irgsp1_rep	CDS	21144813	21144860	.	-	0	Parent=Os01t0558600-01
Chr01	irgsp1_rep	CDS	21144672	21144719	.	-	0	Parent=Os01t0558600-01
Chr01	irgsp1_rep	CDS	21144512	21144583	.	-	0	Parent=Os01t0558600-01
Chr01	irgsp1_rep	CDS	21144269	21144424	.	-	0	Parent=Os01t0558600-01
Chr01	irgsp1_rep	CDS	21144059	21144162	.	-	0	Parent=Os01t0558600-01
Chr01	irgsp1_rep	CDS	21143775	21143868	.	-	1	Parent=Os01t0558600-01
Chr01	irgsp1_rep	three_prime_UTR	21143578	21143774	.	-	.	Parent=Os01t0558600-01
Chr01	irgsp1_rep	mRNA	21150419	21151079	.	+	.	ID=Os01t0558700-01;Name=Os01t0558700-01;Locus_id=Os01g0558700;Note=Conserved hypothetical protein.;Transcript_evidence=AK287514 (DDBJ%2C Best hit);ORF_evidence=NP_001172419.1 (RefSeq);NIAS_FLcDNA=J053031B11;TENOR=Os01t0558700-01;KEGG=Os01t0558700-01
Chr01	irgsp1_rep	five_prime_UTR	21150419	21150460	.	+	.	Parent=Os01t0558700-01
Chr01	irgsp1_rep	CDS	21150461	21150850	.	+	0	Parent=Os01t0558700-01
Chr01	irgsp1_rep	three_prime_UTR	21150851	21151079	.	+	.	Parent=Os01t0558700-01
Chr01	irgsp1_rep	mRNA	21151629	21155639	.	-	.	ID=Os01t0558800-01;Name=Os01t0558800-01;Locus_id=Os01g0558800;Note=Similar to oxidoreductase/ transition metal ion binding protein.;Transcript_evidence=AK068120 (DDBJ%2C Best hit);ORF_evidence=XP_002869432.1 (RefSeq);InterPro=Protein of unknown function DUF3531 (IPR021920);NIAS_FLcDNA=J013135L15;Expression=AK068120;TENOR=Os01t0558800-01;KEGG=Os01t0558800-01
Chr01	irgsp1_rep	five_prime_UTR	21155435	21155639	.	-	.	Parent=Os01t0558800-01
Chr01	irgsp1_rep	CDS	21155114	21155434	.	-	0	Parent=Os01t0558800-01
Chr01	irgsp1_rep	CDS	21154931	21155016	.	-	0	Parent=Os01t0558800-01
Chr01	irgsp1_rep	CDS	21154714	21154792	.	-	1	Parent=Os01t0558800-01
Chr01	irgsp1_rep	CDS	21154515	21154574	.	-	0	Parent=Os01t0558800-01
Chr01	irgsp1_rep	CDS	21154163	21154287	.	-	0	Parent=Os01t0558800-01
Chr01	irgsp1_rep	CDS	21153516	21153587	.	-	1	Parent=Os01t0558800-01
Chr01	irgsp1_rep	CDS	21152185	21152287	.	-	1	Parent=Os01t0558800-01
Chr01	irgsp1_rep	three_prime_UTR	21151629	21152184	.	-	.	Parent=Os01t0558800-01
Chr01	irgsp1_rep	mRNA	21158318	21158615	.	+	.	ID=Os01t0558825-00;Name=Os01t0558825-00;Locus_id=Os01g0558825;Note=Hypothetical protein.;Transcript_evidence=AF207545 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0558825-00
Chr01	irgsp1_rep	five_prime_UTR	21158318	21158319	.	+	.	Parent=Os01t0558825-00
Chr01	irgsp1_rep	CDS	21158320	21158615	.	+	0	Parent=Os01t0558825-00
Chr01	irgsp1_rep	mRNA	21158719	21162420	.	+	.	ID=Os01t0558850-00;Name=Os01t0558850-00;Locus_id=Os01g0558850;Note=Similar to peptidase M16 family protein / insulinase family protein.;Transcript_evidence=BT037467 (DDBJ);ORF_evidence=XP_002866163.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: catalytic activity (GO:0003824),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: metal ion binding (GO:0046872);InterPro=Peptidase M16%2C zinc-binding site (IPR001431),Peptidase M16%2C C-terminal (IPR007863),Peptidase M16%2C core (IPR011237),Metalloenzyme%2C LuxS/M16 peptidase-like%2C metal-binding (IPR011249),Peptidase M16%2C N-terminal (IPR011765);TENOR=Os01t0558850-00;KEGG=Os01t0558850-00
Chr01	irgsp1_rep	CDS	21158719	21159386	.	+	0	Parent=Os01t0558850-00
Chr01	irgsp1_rep	CDS	21159486	21159732	.	+	1	Parent=Os01t0558850-00
Chr01	irgsp1_rep	CDS	21159829	21159954	.	+	0	Parent=Os01t0558850-00
Chr01	irgsp1_rep	CDS	21160181	21160318	.	+	0	Parent=Os01t0558850-00
Chr01	irgsp1_rep	CDS	21160403	21160540	.	+	0	Parent=Os01t0558850-00
Chr01	irgsp1_rep	CDS	21160646	21160903	.	+	0	Parent=Os01t0558850-00
Chr01	irgsp1_rep	CDS	21161294	21161431	.	+	0	Parent=Os01t0558850-00
Chr01	irgsp1_rep	CDS	21161913	21161982	.	+	0	Parent=Os01t0558850-00
Chr01	irgsp1_rep	CDS	21162157	21162377	.	+	2	Parent=Os01t0558850-00
Chr01	irgsp1_rep	three_prime_UTR	21162378	21162420	.	+	.	Parent=Os01t0558850-00
Chr01	irgsp1_rep	mRNA	21166661	21167414	.	+	.	ID=Os01t0558900-01;Name=Os01t0558900-01;Locus_id=Os01g0558900;Note=Conserved hypothetical protein.;Transcript_evidence=AK058447 (DDBJ%2C Best hit);ORF_evidence=Q5JKR1 (UniProt);NIAS_FLcDNA=001-015-G07;Expression=AK058447;TENOR=Os01t0558900-01;KEGG=Os01t0558900-01
Chr01	irgsp1_rep	five_prime_UTR	21166661	21166662	.	+	.	Parent=Os01t0558900-01
Chr01	irgsp1_rep	CDS	21166663	21166782	.	+	0	Parent=Os01t0558900-01
Chr01	irgsp1_rep	CDS	21166877	21166954	.	+	0	Parent=Os01t0558900-01
Chr01	irgsp1_rep	three_prime_UTR	21166955	21167414	.	+	.	Parent=Os01t0558900-01
Chr01	irgsp1_rep	mRNA	21167379	21167476	.	+	.	ID=Os01t0558900-02;Name=Os01t0558900-02;Locus_id=Os01g0558900;Note=Non-protein coding transcript.;Transcript_evidence=AK060673 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-028-H07;TENOR=Os01t0558900-02
Chr01	irgsp1_rep	exon	21167379	21167476	.	+	.	Parent=Os01t0558900-02
Chr01	irgsp1_rep	mRNA	21167873	21172622	.	+	.	ID=Os01t0559000-01;Name=Os01t0559000-01;Locus_id=Os01g0559000;Note=Protein of unknown function DUF1000 family protein.;Transcript_evidence=AK061456 (DDBJ%2C Best hit);ORF_evidence=B6T8X4 (UniProt);InterPro=Galactose-binding domain-like (IPR008979),Proteasome-interacting thioredoxin-like domain%2C C-terminal (IPR010400);NIAS_FLcDNA=006-307-H03;Expression=AK061456;TENOR=Os01t0559000-01;KEGG=Os01t0559000-01
Chr01	irgsp1_rep	five_prime_UTR	21167873	21168030	.	+	.	Parent=Os01t0559000-01
Chr01	irgsp1_rep	CDS	21168031	21168114	.	+	0	Parent=Os01t0559000-01
Chr01	irgsp1_rep	CDS	21168385	21168465	.	+	0	Parent=Os01t0559000-01
Chr01	irgsp1_rep	CDS	21169561	21169610	.	+	0	Parent=Os01t0559000-01
Chr01	irgsp1_rep	CDS	21170583	21170660	.	+	1	Parent=Os01t0559000-01
Chr01	irgsp1_rep	CDS	21170769	21170826	.	+	1	Parent=Os01t0559000-01
Chr01	irgsp1_rep	CDS	21170913	21170962	.	+	0	Parent=Os01t0559000-01
Chr01	irgsp1_rep	CDS	21171364	21171472	.	+	1	Parent=Os01t0559000-01
Chr01	irgsp1_rep	CDS	21171556	21171617	.	+	0	Parent=Os01t0559000-01
Chr01	irgsp1_rep	CDS	21172211	21172253	.	+	1	Parent=Os01t0559000-01
Chr01	irgsp1_rep	three_prime_UTR	21172254	21172262	.	+	.	Parent=Os01t0559000-01
Chr01	irgsp1_rep	three_prime_UTR	21172371	21172622	.	+	.	Parent=Os01t0559000-01
Chr01	irgsp1_rep	mRNA	21167915	21172622	.	+	.	ID=Os01t0559000-02;Name=Os01t0559000-02;Locus_id=Os01g0559000;Note=Similar to Thioredoxin family Trp26.;Transcript_evidence=AK070797 (DDBJ%2C Best hit);ORF_evidence=B6T8X4 (UniProt);InterPro=Galactose-binding domain-like (IPR008979),Proteasome-interacting thioredoxin-like domain%2C C-terminal (IPR010400);NIAS_FLcDNA=J023064B10;Expression=AK070797;TENOR=Os01t0559000-02;KEGG=Os01t0559000-02
Chr01	irgsp1_rep	five_prime_UTR	21167915	21168030	.	+	.	Parent=Os01t0559000-02
Chr01	irgsp1_rep	CDS	21168031	21168114	.	+	0	Parent=Os01t0559000-02
Chr01	irgsp1_rep	CDS	21168385	21168465	.	+	0	Parent=Os01t0559000-02
Chr01	irgsp1_rep	CDS	21169561	21169614	.	+	0	Parent=Os01t0559000-02
Chr01	irgsp1_rep	three_prime_UTR	21169615	21170660	.	+	.	Parent=Os01t0559000-02
Chr01	irgsp1_rep	three_prime_UTR	21170769	21170826	.	+	.	Parent=Os01t0559000-02
Chr01	irgsp1_rep	three_prime_UTR	21170913	21170962	.	+	.	Parent=Os01t0559000-02
Chr01	irgsp1_rep	three_prime_UTR	21171364	21171472	.	+	.	Parent=Os01t0559000-02
Chr01	irgsp1_rep	three_prime_UTR	21171556	21171617	.	+	.	Parent=Os01t0559000-02
Chr01	irgsp1_rep	three_prime_UTR	21172211	21172262	.	+	.	Parent=Os01t0559000-02
Chr01	irgsp1_rep	three_prime_UTR	21172371	21172622	.	+	.	Parent=Os01t0559000-02
Chr01	irgsp1_rep	mRNA	21175807	21179905	.	+	.	ID=Os01t0559100-01;Name=Os01t0559100-01;Locus_id=Os01g0559100;Note=Similar to Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS) (Fragment).;Transcript_evidence=AK105730 (DDBJ%2C Best hit);ORF_evidence=B4FRC4 (UniProt);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: seryl-tRNA aminoacylation (GO:0006434),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: serine-tRNA ligase activity (GO:0004828),Molecular Function: ATP binding (GO:0005524);InterPro=Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved domain (IPR002314),Seryl-tRNA synthetase%2C class IIa (IPR002317),Aminoacyl-tRNA synthetase%2C class II (IPR006195),tRNA-binding arm (IPR010978),Seryl-tRNA synthetase%2C class IIa%2C N-terminal (IPR015866);NIAS_FLcDNA=001-201-H03;Expression=AK105730;TENOR=Os01t0559100-01;KEGG=Os01t0559100-01 (EC:6.1.1.11)
Chr01	irgsp1_rep	five_prime_UTR	21175807	21175990	.	+	.	Parent=Os01t0559100-01
Chr01	irgsp1_rep	CDS	21175991	21176123	.	+	0	Parent=Os01t0559100-01
Chr01	irgsp1_rep	CDS	21176222	21176292	.	+	2	Parent=Os01t0559100-01
Chr01	irgsp1_rep	CDS	21176382	21176412	.	+	0	Parent=Os01t0559100-01
Chr01	irgsp1_rep	CDS	21176473	21176543	.	+	2	Parent=Os01t0559100-01
Chr01	irgsp1_rep	CDS	21176885	21176990	.	+	0	Parent=Os01t0559100-01
Chr01	irgsp1_rep	CDS	21178132	21178323	.	+	2	Parent=Os01t0559100-01
Chr01	irgsp1_rep	CDS	21178575	21178680	.	+	2	Parent=Os01t0559100-01
Chr01	irgsp1_rep	CDS	21178758	21178941	.	+	1	Parent=Os01t0559100-01
Chr01	irgsp1_rep	CDS	21179035	21179214	.	+	0	Parent=Os01t0559100-01
Chr01	irgsp1_rep	CDS	21179298	21179501	.	+	0	Parent=Os01t0559100-01
Chr01	irgsp1_rep	three_prime_UTR	21179502	21179514	.	+	.	Parent=Os01t0559100-01
Chr01	irgsp1_rep	three_prime_UTR	21179610	21179905	.	+	.	Parent=Os01t0559100-01
Chr01	irgsp1_rep	mRNA	21175916	21179898	.	+	.	ID=Os01t0559100-02;Name=Os01t0559100-02;Locus_id=Os01g0559100;Note=Similar to seryl-tRNA synthetase1.;Transcript_evidence=AK069764 (DDBJ%2C Best hit);ORF_evidence=B4FRC4 (UniProt);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: seryl-tRNA aminoacylation (GO:0006434),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: serine-tRNA ligase activity (GO:0004828),Molecular Function: ATP binding (GO:0005524);InterPro=Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved domain (IPR002314),Seryl-tRNA synthetase%2C class IIa (IPR002317),Aminoacyl-tRNA synthetase%2C class II (IPR006195),tRNA-binding arm (IPR010978),Seryl-tRNA synthetase%2C class IIa%2C N-terminal (IPR015866);NIAS_FLcDNA=J023026G18;Expression=AK069764;TENOR=Os01t0559100-02;KEGG=Os01t0559100-02 (EC:6.1.1.11)
Chr01	irgsp1_rep	five_prime_UTR	21175916	21175990	.	+	.	Parent=Os01t0559100-02
Chr01	irgsp1_rep	CDS	21175991	21176123	.	+	0	Parent=Os01t0559100-02
Chr01	irgsp1_rep	CDS	21176222	21176292	.	+	2	Parent=Os01t0559100-02
Chr01	irgsp1_rep	CDS	21176382	21176543	.	+	0	Parent=Os01t0559100-02
Chr01	irgsp1_rep	CDS	21176885	21176990	.	+	0	Parent=Os01t0559100-02
Chr01	irgsp1_rep	CDS	21178132	21178323	.	+	2	Parent=Os01t0559100-02
Chr01	irgsp1_rep	CDS	21178575	21178680	.	+	2	Parent=Os01t0559100-02
Chr01	irgsp1_rep	CDS	21178758	21178941	.	+	1	Parent=Os01t0559100-02
Chr01	irgsp1_rep	CDS	21179035	21179283	.	+	0	Parent=Os01t0559100-02
Chr01	irgsp1_rep	three_prime_UTR	21179284	21179514	.	+	.	Parent=Os01t0559100-02
Chr01	irgsp1_rep	three_prime_UTR	21179610	21179898	.	+	.	Parent=Os01t0559100-02
Chr01	irgsp1_rep	mRNA	21175987	21179515	.	-	.	ID=Os01t0559150-00;Name=Os01t0559150-00;Locus_id=Os01g0559150;Note=Hypothetical protein.;Transcript_evidence=tplb0033a05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0559150-00
Chr01	irgsp1_rep	five_prime_UTR	21179422	21179515	.	-	.	Parent=Os01t0559150-00
Chr01	irgsp1_rep	CDS	21179296	21179421	.	-	0	Parent=Os01t0559150-00
Chr01	irgsp1_rep	CDS	21179093	21179212	.	-	0	Parent=Os01t0559150-00
Chr01	irgsp1_rep	three_prime_UTR	21179033	21179092	.	-	.	Parent=Os01t0559150-00
Chr01	irgsp1_rep	three_prime_UTR	21178742	21178931	.	-	.	Parent=Os01t0559150-00
Chr01	irgsp1_rep	three_prime_UTR	21178575	21178665	.	-	.	Parent=Os01t0559150-00
Chr01	irgsp1_rep	three_prime_UTR	21178130	21178324	.	-	.	Parent=Os01t0559150-00
Chr01	irgsp1_rep	three_prime_UTR	21176883	21176988	.	-	.	Parent=Os01t0559150-00
Chr01	irgsp1_rep	three_prime_UTR	21176394	21176541	.	-	.	Parent=Os01t0559150-00
Chr01	irgsp1_rep	three_prime_UTR	21176197	21176302	.	-	.	Parent=Os01t0559150-00
Chr01	irgsp1_rep	three_prime_UTR	21175987	21176101	.	-	.	Parent=Os01t0559150-00
Chr01	irgsp1_rep	mRNA	21181447	21184010	.	+	.	ID=Os01t0559200-01;Name=Os01t0559200-01;Locus_id=Os01g0559200;Note=Phosphorylated adapter RNA export protein%2C RNA-binding domain domain containing protein.;Transcript_evidence=AK102611 (DDBJ%2C Best hit);ORF_evidence=B9EXJ7 (UniProt);InterPro=Phosphorylated adapter RNA export protein%2C RNA-binding domain (IPR019385);NIAS_FLcDNA=J033099D01;Expression=AK102611;TENOR=Os01t0559200-01;KEGG=Os01t0559200-01
Chr01	irgsp1_rep	five_prime_UTR	21181447	21181649	.	+	.	Parent=Os01t0559200-01
Chr01	irgsp1_rep	CDS	21181650	21181957	.	+	0	Parent=Os01t0559200-01
Chr01	irgsp1_rep	CDS	21182425	21182530	.	+	1	Parent=Os01t0559200-01
Chr01	irgsp1_rep	CDS	21183078	21183221	.	+	0	Parent=Os01t0559200-01
Chr01	irgsp1_rep	CDS	21183510	21183782	.	+	0	Parent=Os01t0559200-01
Chr01	irgsp1_rep	three_prime_UTR	21183783	21184010	.	+	.	Parent=Os01t0559200-01
Chr01	irgsp1_rep	mRNA	21184950	21187424	.	+	.	ID=Os01t0559300-01;Name=Os01t0559300-01;Locus_id=Os01g0559300;Note=Conserved hypothetical protein.;Transcript_evidence=AK064666 (DDBJ%2C Best hit);ORF_evidence=A2WRD9 (UniProt);NIAS_FLcDNA=002-115-B10;Expression=AK064666;TENOR=Os01t0559300-01;KEGG=Os01t0559300-01
Chr01	irgsp1_rep	five_prime_UTR	21184950	21185003	.	+	.	Parent=Os01t0559300-01
Chr01	irgsp1_rep	CDS	21185004	21185112	.	+	0	Parent=Os01t0559300-01
Chr01	irgsp1_rep	CDS	21185196	21185257	.	+	2	Parent=Os01t0559300-01
Chr01	irgsp1_rep	CDS	21185395	21185478	.	+	0	Parent=Os01t0559300-01
Chr01	irgsp1_rep	CDS	21185959	21186013	.	+	0	Parent=Os01t0559300-01
Chr01	irgsp1_rep	CDS	21186733	21186859	.	+	2	Parent=Os01t0559300-01
Chr01	irgsp1_rep	CDS	21187019	21187069	.	+	1	Parent=Os01t0559300-01
Chr01	irgsp1_rep	CDS	21187165	21187264	.	+	1	Parent=Os01t0559300-01
Chr01	irgsp1_rep	three_prime_UTR	21187265	21187424	.	+	.	Parent=Os01t0559300-01
Chr01	irgsp1_rep	mRNA	21195400	21201154	.	+	.	ID=Os01t0559500-01;Name=Os01t0559500-01;Locus_id=Os01g0559500;RAP-DB Gene Symbol Synonym(s)=WSL;RAP-DB Gene Name Synonym(s)=white stripe leaf;CGSNL Gene Symbol=WSL;CGSNL Gene Name=WHITE STRIPE LEAF;Oryzabase Gene Name Synonym(s)=white stripe leaf;Note=Pentatricopeptide repeat (PPR) protein%2C Splicing of chloroplast mRNA%2C Chloroplast development%2C Abiotic stress response;Transcript_evidence=AK288159;ORF_evidence=Q5JKQ7;GO=Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical domain superfamily (IPR011990),Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J090001G18;Manual Curation=September 26%2C 2018;Literature_PMID=24821718;Oryzabase=19637;TENOR=Os01t0559500-01;KEGG=Os01t0559500-01;Subcellular location=chloroplast (GO:0009507)
Chr01	irgsp1_rep	five_prime_UTR	21195400	21195431	.	+	.	Parent=Os01t0559500-01
Chr01	irgsp1_rep	CDS	21195432	21195673	.	+	0	Parent=Os01t0559500-01
Chr01	irgsp1_rep	CDS	21195878	21195962	.	+	1	Parent=Os01t0559500-01
Chr01	irgsp1_rep	CDS	21196049	21196312	.	+	0	Parent=Os01t0559500-01
Chr01	irgsp1_rep	CDS	21196408	21196710	.	+	0	Parent=Os01t0559500-01
Chr01	irgsp1_rep	CDS	21197585	21197689	.	+	0	Parent=Os01t0559500-01
Chr01	irgsp1_rep	CDS	21197806	21197905	.	+	0	Parent=Os01t0559500-01
Chr01	irgsp1_rep	CDS	21199504	21199823	.	+	2	Parent=Os01t0559500-01
Chr01	irgsp1_rep	CDS	21200073	21200249	.	+	0	Parent=Os01t0559500-01
Chr01	irgsp1_rep	CDS	21200322	21200450	.	+	0	Parent=Os01t0559500-01
Chr01	irgsp1_rep	CDS	21200741	21200968	.	+	0	Parent=Os01t0559500-01
Chr01	irgsp1_rep	three_prime_UTR	21200969	21201154	.	+	.	Parent=Os01t0559500-01
Chr01	irgsp1_rep	mRNA	21195401	21201532	.	-	.	ID=Os01t0559525-00;Name=Os01t0559525-00;Locus_id=Os01g0559525;Note=Non-protein coding transcript.;Transcript_evidence=tplb0046j15 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os01t0559525-00
Chr01	irgsp1_rep	exon	21201256	21201532	.	-	.	Parent=Os01t0559525-00
Chr01	irgsp1_rep	exon	21200737	21201204	.	-	.	Parent=Os01t0559525-00
Chr01	irgsp1_rep	exon	21200071	21200252	.	-	.	Parent=Os01t0559525-00
Chr01	irgsp1_rep	exon	21199503	21199821	.	-	.	Parent=Os01t0559525-00
Chr01	irgsp1_rep	exon	21197815	21197904	.	-	.	Parent=Os01t0559525-00
Chr01	irgsp1_rep	exon	21197592	21197703	.	-	.	Parent=Os01t0559525-00
Chr01	irgsp1_rep	exon	21196402	21196715	.	-	.	Parent=Os01t0559525-00
Chr01	irgsp1_rep	exon	21196039	21196302	.	-	.	Parent=Os01t0559525-00
Chr01	irgsp1_rep	exon	21195862	21195957	.	-	.	Parent=Os01t0559525-00
Chr01	irgsp1_rep	exon	21195401	21195665	.	-	.	Parent=Os01t0559525-00
Chr01	irgsp1_rep	mRNA	21201971	21203280	.	+	.	ID=Os01t0559550-00;Name=Os01t0559550-00;Locus_id=Os01g0559550;Note=Non-protein coding transcript.;Transcript_evidence=CT834992 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os01t0559550-00
Chr01	irgsp1_rep	exon	21201971	21202068	.	+	.	Parent=Os01t0559550-00
Chr01	irgsp1_rep	exon	21202664	21203280	.	+	.	Parent=Os01t0559550-00
Chr01	irgsp1_rep	mRNA	21230393	21234906	.	+	.	ID=Os01t0559600-01;Name=Os01t0559600-01;Locus_id=Os01g0559600;Oryzabase Gene Symbol Synonym(s)=OsVPE2%2C VPE2%2C OsaLeg1%2C aLeg1;Oryzabase Gene Name Synonym(s)=vacuolar processing enzyme 2%2C legumain 1;Note=Similar to C13 endopeptidase NP1 precursor.;Transcript_evidence=AK067597 (DDBJ%2C Best hit);ORF_evidence=Q9SSZ4 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197);InterPro=Peptidase C13%2C legumain (IPR001096);NIAS_FLcDNA=J013108L21;Oryzabase=10527;Expression=AK067597;TENOR=Os01t0559600-01;KEGG=Os01t0559600-01 (EC:3.4.22.34)
Chr01	irgsp1_rep	five_prime_UTR	21230393	21230501	.	+	.	Parent=Os01t0559600-01
Chr01	irgsp1_rep	CDS	21230502	21230747	.	+	0	Parent=Os01t0559600-01
Chr01	irgsp1_rep	CDS	21231513	21231677	.	+	0	Parent=Os01t0559600-01
Chr01	irgsp1_rep	CDS	21232073	21232229	.	+	0	Parent=Os01t0559600-01
Chr01	irgsp1_rep	CDS	21232339	21232424	.	+	2	Parent=Os01t0559600-01
Chr01	irgsp1_rep	CDS	21232519	21232718	.	+	0	Parent=Os01t0559600-01
Chr01	irgsp1_rep	CDS	21233549	21233597	.	+	1	Parent=Os01t0559600-01
Chr01	irgsp1_rep	CDS	21233676	21233888	.	+	0	Parent=Os01t0559600-01
Chr01	irgsp1_rep	CDS	21233996	21234202	.	+	0	Parent=Os01t0559600-01
Chr01	irgsp1_rep	CDS	21234404	21234586	.	+	0	Parent=Os01t0559600-01
Chr01	irgsp1_rep	three_prime_UTR	21234587	21234906	.	+	.	Parent=Os01t0559600-01
Chr01	irgsp1_rep	mRNA	21232521	21234906	.	+	.	ID=Os01t0559600-02;Name=Os01t0559600-02;Locus_id=Os01g0559600;Oryzabase Gene Symbol Synonym(s)=OsVPE2%2C VPE2%2C OsaLeg1%2C aLeg1;Oryzabase Gene Name Synonym(s)=vacuolar processing enzyme 2%2C legumain 1;Note=Similar to Asparaginyl endopeptidase.;Transcript_evidence=AK068011 (DDBJ%2C Best hit);ORF_evidence=Q9SSZ4 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197);InterPro=Peptidase C13%2C legumain (IPR001096);NIAS_FLcDNA=J013130D24;Oryzabase=10527;Expression=AK068011;TENOR=Os01t0559600-02;KEGG=Os01t0559600-02 (EC:3.4.22.34)
Chr01	irgsp1_rep	five_prime_UTR	21232521	21232521	.	+	.	Parent=Os01t0559600-02
Chr01	irgsp1_rep	CDS	21232522	21232718	.	+	0	Parent=Os01t0559600-02
Chr01	irgsp1_rep	CDS	21233549	21233597	.	+	1	Parent=Os01t0559600-02
Chr01	irgsp1_rep	CDS	21233676	21233888	.	+	0	Parent=Os01t0559600-02
Chr01	irgsp1_rep	CDS	21233996	21234202	.	+	0	Parent=Os01t0559600-02
Chr01	irgsp1_rep	CDS	21234404	21234586	.	+	0	Parent=Os01t0559600-02
Chr01	irgsp1_rep	three_prime_UTR	21234587	21234906	.	+	.	Parent=Os01t0559600-02
Chr01	irgsp1_rep	mRNA	21242600	21243209	.	+	.	ID=Os01t0559750-01;Name=Os01t0559750-01;Locus_id=Os01g0559750;Note=Hypothetical gene.;Transcript_evidence=AK241989 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J075099B13;TENOR=Os01t0559750-01;KEGG=Os01t0559750-01
Chr01	irgsp1_rep	five_prime_UTR	21242600	21242601	.	+	.	Parent=Os01t0559750-01
Chr01	irgsp1_rep	CDS	21242602	21242898	.	+	0	Parent=Os01t0559750-01
Chr01	irgsp1_rep	three_prime_UTR	21242899	21243209	.	+	.	Parent=Os01t0559750-01
Chr01	irgsp1_rep	mRNA	21261706	21262137	.	-	.	ID=Os01t0559825-00;Name=Os01t0559825-00;Locus_id=Os01g0559825;Note=Hypothetical protein.;Transcript_evidence=EU942443 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0559825-00
Chr01	irgsp1_rep	CDS	21261850	21262137	.	-	0	Parent=Os01t0559825-00
Chr01	irgsp1_rep	three_prime_UTR	21261706	21261849	.	-	.	Parent=Os01t0559825-00
Chr01	irgsp1_rep	mRNA	21261805	21262418	.	+	.	ID=Os01t0559900-01;Name=Os01t0559900-01;Locus_id=Os01g0559900;CGSNL Gene Symbol=AGP14;CGSNL Gene Name=ARABINOGALACTAN PROTEIN 14;Oryzabase Gene Symbol Synonym(s)=OsAGP14%2C OsAGPEP2;Oryzabase Gene Name Synonym(s)=Arabinogalactan protein 14%2C arabinogalactan peptide 2;Note=Non-protein coding transcript.;Transcript_evidence=AK243203 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J100041C10;Oryzabase=11307;TENOR=Os01t0559900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	exon	21261805	21262418	.	+	.	Parent=Os01t0559900-01
Chr01	irgsp1_rep	mRNA	21265832	21270762	.	-	.	ID=Os01t0560000-01;Name=Os01t0560000-01;Locus_id=Os01g0560000;CGSNL Gene Symbol=AH8;CGSNL Gene Name=AMIDOHYDROLASE 8;Oryzabase Gene Symbol Synonym(s)=OsAH8;Oryzabase Gene Name Synonym(s)=amidohydrolase 8;Note=Similar to Auxin amidohydrolase.;Transcript_evidence=AK105974 (DDBJ%2C Best hit);ORF_evidence=Q8S9S4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Peptidase M20 (IPR002933),Peptidase M20%2C dimerisation (IPR011650),Amidohydrolase (IPR017439);NIAS_FLcDNA=001-205-F05;Oryzabase=23122;Expression=AK105974;TENOR=Os01t0560000-01;KEGG=Os01t0560000-01
Chr01	irgsp1_rep	five_prime_UTR	21270740	21270762	.	-	.	Parent=Os01t0560000-01
Chr01	irgsp1_rep	CDS	21270389	21270739	.	-	0	Parent=Os01t0560000-01
Chr01	irgsp1_rep	CDS	21268905	21269030	.	-	0	Parent=Os01t0560000-01
Chr01	irgsp1_rep	CDS	21267574	21267888	.	-	0	Parent=Os01t0560000-01
Chr01	irgsp1_rep	CDS	21266795	21266923	.	-	0	Parent=Os01t0560000-01
Chr01	irgsp1_rep	CDS	21266022	21266429	.	-	0	Parent=Os01t0560000-01
Chr01	irgsp1_rep	three_prime_UTR	21265832	21266021	.	-	.	Parent=Os01t0560000-01
Chr01	irgsp1_rep	mRNA	21265812	21268973	.	-	.	ID=Os01t0560000-02;Name=Os01t0560000-02;Locus_id=Os01g0560000;CGSNL Gene Symbol=AH8;CGSNL Gene Name=AMIDOHYDROLASE 8;Oryzabase Gene Symbol Synonym(s)=OsAH8;Oryzabase Gene Name Synonym(s)=amidohydrolase 8;Note=Similar to cDNA clone:001-205-F05%2C full insert sequence.;Transcript_evidence=AK059399 (DDBJ%2C Best hit);ORF_evidence=B7EYM8 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Peptidase M20 (IPR002933),Peptidase M20%2C dimerisation (IPR011650),Amidohydrolase (IPR017439);NIAS_FLcDNA=001-027-B02;Oryzabase=23122;Expression=AK059399;TENOR=Os01t0560000-02;KEGG=Os01t0560000-02
Chr01	irgsp1_rep	CDS	21268905	21268973	.	-	0	Parent=Os01t0560000-02
Chr01	irgsp1_rep	CDS	21267574	21267888	.	-	0	Parent=Os01t0560000-02
Chr01	irgsp1_rep	CDS	21266795	21266923	.	-	0	Parent=Os01t0560000-02
Chr01	irgsp1_rep	CDS	21266022	21266429	.	-	0	Parent=Os01t0560000-02
Chr01	irgsp1_rep	three_prime_UTR	21265812	21266021	.	-	.	Parent=Os01t0560000-02
Chr01	irgsp1_rep	mRNA	21275618	21278757	.	+	.	ID=Os01t0560200-01;Name=Os01t0560200-01;Locus_id=Os01g0560200;Note=Similar to Vesicle transport v-SNARE 13 (AtVTI13) (Vesicle transport v-SNARE protein VTI13) (Vesicle soluble NSF attachment protein receptor 13).;Transcript_evidence=AK102003 (DDBJ%2C Best hit);ORF_evidence=NP_001147199.1 (RefSeq);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: membrane (GO:0016020);InterPro=Vesicle transport v-SNARE%2C N-terminal (IPR007705),t-SNARE (IPR010989);NIAS_FLcDNA=J033079N06;Expression=AK102003;TENOR=Os01t0560200-01;KEGG=Os01t0560200-01
Chr01	irgsp1_rep	five_prime_UTR	21275618	21275724	.	+	.	Parent=Os01t0560200-01
Chr01	irgsp1_rep	CDS	21275725	21275818	.	+	0	Parent=Os01t0560200-01
Chr01	irgsp1_rep	CDS	21275919	21275977	.	+	2	Parent=Os01t0560200-01
Chr01	irgsp1_rep	CDS	21276343	21276531	.	+	0	Parent=Os01t0560200-01
Chr01	irgsp1_rep	CDS	21277458	21277628	.	+	0	Parent=Os01t0560200-01
Chr01	irgsp1_rep	CDS	21278432	21278584	.	+	0	Parent=Os01t0560200-01
Chr01	irgsp1_rep	three_prime_UTR	21278585	21278757	.	+	.	Parent=Os01t0560200-01
Chr01	irgsp1_rep	mRNA	21337973	21340953	.	-	.	ID=Os01t0561500-01;Name=Os01t0561500-01;Locus_id=Os01g0561500;Note=Conserved hypothetical protein.;Transcript_evidence=AK071428 (DDBJ%2C Best hit);ORF_evidence=Q688W9 (UniProt);NIAS_FLcDNA=J023092F23;TENOR=Os01t0561500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	21340307	21340953	.	-	.	Parent=Os01t0561500-01
Chr01	irgsp1_rep	CDS	21339944	21340306	.	-	0	Parent=Os01t0561500-01
Chr01	irgsp1_rep	three_prime_UTR	21339554	21339943	.	-	.	Parent=Os01t0561500-01
Chr01	irgsp1_rep	three_prime_UTR	21337973	21339336	.	-	.	Parent=Os01t0561500-01
Chr01	irgsp1_rep	mRNA	21342129	21344066	.	-	.	ID=Os01t0561600-01;Name=Os01t0561600-01;Locus_id=Os01g0561600;CGSNL Gene Symbol=CYP76M14;CGSNL Gene Name=P-450 76M14;Oryzabase Gene Symbol Synonym(s)=CYP76M14;Oryzabase Gene Name Synonym(s)=CytoChrome P450 76M14;Note=CytoChrome P450 family protein.;Transcript_evidence=AK069494 (DDBJ%2C Best hit);ORF_evidence=C8C9S7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J023025F12;Oryzabase=12419;Expression=AK069494;TENOR=Os01t0561600-01;KEGG=Os01t0561600-01
Chr01	irgsp1_rep	five_prime_UTR	21343953	21344066	.	-	.	Parent=Os01t0561600-01
Chr01	irgsp1_rep	CDS	21342378	21343952	.	-	0	Parent=Os01t0561600-01
Chr01	irgsp1_rep	three_prime_UTR	21342129	21342377	.	-	.	Parent=Os01t0561600-01
Chr01	irgsp1_rep	mRNA	21348064	21349254	.	+	.	ID=Os01t0561800-00;Name=Os01t0561800-00;Locus_id=Os01g0561800;Note=Non-protein coding transcript.;Transcript_evidence=EU956917 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0561800-00
Chr01	irgsp1_rep	exon	21348064	21349254	.	+	.	Parent=Os01t0561800-00
Chr01	irgsp1_rep	mRNA	21362091	21362898	.	+	.	ID=Os01t0561950-00;Name=Os01t0561950-00;Locus_id=Os01g0561950;Note=Hypothetical protein.;Transcript_evidence=EU956917 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0561950-00
Chr01	irgsp1_rep	five_prime_UTR	21362091	21362092	.	+	.	Parent=Os01t0561950-00
Chr01	irgsp1_rep	CDS	21362093	21362602	.	+	0	Parent=Os01t0561950-00
Chr01	irgsp1_rep	three_prime_UTR	21362603	21362898	.	+	.	Parent=Os01t0561950-00
Chr01	irgsp1_rep	mRNA	21381884	21389642	.	+	.	ID=Os01t0562400-01;Name=Os01t0562400-01;Locus_id=Os01g0562400;Oryzabase Gene Symbol Synonym(s)=OsFKBP57;Oryzabase Gene Name Synonym(s)=FK506 binding protein 57;Note=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type%2C domain domain containing protein.;Transcript_evidence=AK072598 (DDBJ%2C Best hit);ORF_evidence=A2ZUF7 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: binding (GO:0005488);InterPro=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type%2C domain (IPR001179),Tetratricopeptide-like helical (IPR011990),Peptidyl-prolyl cis-trans isomerase%2C FKBP-type (IPR023566);NIAS_FLcDNA=J023128L13;Oryzabase=10044;TENOR=Os01t0562400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	21381884	21382061	.	+	.	Parent=Os01t0562400-01
Chr01	irgsp1_rep	CDS	21382062	21382143	.	+	0	Parent=Os01t0562400-01
Chr01	irgsp1_rep	CDS	21382509	21382595	.	+	2	Parent=Os01t0562400-01
Chr01	irgsp1_rep	CDS	21383752	21384024	.	+	2	Parent=Os01t0562400-01
Chr01	irgsp1_rep	CDS	21384194	21384268	.	+	2	Parent=Os01t0562400-01
Chr01	irgsp1_rep	CDS	21384360	21384440	.	+	2	Parent=Os01t0562400-01
Chr01	irgsp1_rep	CDS	21384727	21384924	.	+	2	Parent=Os01t0562400-01
Chr01	irgsp1_rep	CDS	21385035	21385124	.	+	2	Parent=Os01t0562400-01
Chr01	irgsp1_rep	CDS	21385200	21385357	.	+	2	Parent=Os01t0562400-01
Chr01	irgsp1_rep	CDS	21385509	21385631	.	+	0	Parent=Os01t0562400-01
Chr01	irgsp1_rep	CDS	21385781	21385924	.	+	0	Parent=Os01t0562400-01
Chr01	irgsp1_rep	CDS	21386065	21386175	.	+	0	Parent=Os01t0562400-01
Chr01	irgsp1_rep	CDS	21389209	21389517	.	+	0	Parent=Os01t0562400-01
Chr01	irgsp1_rep	three_prime_UTR	21389518	21389642	.	+	.	Parent=Os01t0562400-01
Chr01	irgsp1_rep	mRNA	21391040	21391176	.	+	.	ID=Os01t0562525-00;Name=Os01t0562525-00;Locus_id=Os01g0562525;Note=Non-protein coding transcript.;Transcript_evidence=BT087207 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0562525-00
Chr01	irgsp1_rep	exon	21391040	21391176	.	+	.	Parent=Os01t0562525-00
Chr01	irgsp1_rep	mRNA	21392230	21393650	.	-	.	ID=Os01t0562600-01;Name=Os01t0562600-01;Locus_id=Os01g0562600;Note=Protein of unknown function DUF247%2C plant domain containing protein.;Transcript_evidence=AK061217 (DDBJ%2C Best hit);ORF_evidence=A2ZUF8 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);NIAS_FLcDNA=006-210-E06;TENOR=Os01t0562600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	21393649	21393650	.	-	.	Parent=Os01t0562600-01
Chr01	irgsp1_rep	CDS	21392410	21393648	.	-	0	Parent=Os01t0562600-01
Chr01	irgsp1_rep	three_prime_UTR	21392230	21392409	.	-	.	Parent=Os01t0562600-01
Chr01	irgsp1_rep	mRNA	21415022	21441440	.	+	.	ID=Os01t0563000-01;Name=Os01t0563000-01;Locus_id=Os01g0563000;Oryzabase Gene Symbol Synonym(s)=OsFKBP73;Oryzabase Gene Name Synonym(s)=FK506 binding protein 73;Note=Hypothetical conserved gene.;Transcript_evidence=AK068876 (DDBJ%2C Best hit);ORF_evidence=Q657L7 (UniProt);GO=Biological Process: protein folding (GO:0006457);InterPro=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type%2C domain (IPR001179),Peptidyl-prolyl cis-trans isomerase%2C FKBP-type (IPR023566);NIAS_FLcDNA=J013170E02;Oryzabase=10051;Expression=AK068876;TENOR=Os01t0563000-01;KEGG=Os01t0563000-01 (EC:5.2.1.8)
Chr01	irgsp1_rep	five_prime_UTR	21415022	21415161	.	+	.	Parent=Os01t0563000-01
Chr01	irgsp1_rep	five_prime_UTR	21415237	21415283	.	+	.	Parent=Os01t0563000-01
Chr01	irgsp1_rep	CDS	21415284	21415515	.	+	0	Parent=Os01t0563000-01
Chr01	irgsp1_rep	CDS	21424262	21424348	.	+	2	Parent=Os01t0563000-01
Chr01	irgsp1_rep	CDS	21424515	21424790	.	+	2	Parent=Os01t0563000-01
Chr01	irgsp1_rep	CDS	21425450	21425524	.	+	2	Parent=Os01t0563000-01
Chr01	irgsp1_rep	CDS	21425626	21425706	.	+	2	Parent=Os01t0563000-01
Chr01	irgsp1_rep	CDS	21426007	21426198	.	+	2	Parent=Os01t0563000-01
Chr01	irgsp1_rep	CDS	21431623	21431712	.	+	2	Parent=Os01t0563000-01
Chr01	irgsp1_rep	CDS	21431817	21431923	.	+	2	Parent=Os01t0563000-01
Chr01	irgsp1_rep	CDS	21441102	21441281	.	+	0	Parent=Os01t0563000-01
Chr01	irgsp1_rep	three_prime_UTR	21441282	21441440	.	+	.	Parent=Os01t0563000-01
Chr01	irgsp1_rep	mRNA	21415065	21441440	.	+	.	ID=Os01t0563000-02;Name=Os01t0563000-02;Locus_id=Os01g0563000;Oryzabase Gene Symbol Synonym(s)=OsFKBP73;Oryzabase Gene Name Synonym(s)=FK506 binding protein 73;Note=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type domain containing protein.;Transcript_evidence=AK067665 (DDBJ%2C Best hit);ORF_evidence=Q657L8 (UniProt);GO=Biological Process: protein folding (GO:0006457);InterPro=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type%2C domain (IPR001179),Peptidyl-prolyl cis-trans isomerase%2C FKBP-type (IPR023566);NIAS_FLcDNA=J013116C16;Oryzabase=10051;Expression=AK067665;TENOR=Os01t0563000-02;KEGG=Os01t0563000-02
Chr01	irgsp1_rep	five_prime_UTR	21415065	21415161	.	+	.	Parent=Os01t0563000-02
Chr01	irgsp1_rep	five_prime_UTR	21415237	21415283	.	+	.	Parent=Os01t0563000-02
Chr01	irgsp1_rep	CDS	21415284	21415515	.	+	0	Parent=Os01t0563000-02
Chr01	irgsp1_rep	CDS	21424262	21424348	.	+	2	Parent=Os01t0563000-02
Chr01	irgsp1_rep	CDS	21424515	21424790	.	+	2	Parent=Os01t0563000-02
Chr01	irgsp1_rep	CDS	21425450	21425524	.	+	2	Parent=Os01t0563000-02
Chr01	irgsp1_rep	CDS	21425626	21425706	.	+	2	Parent=Os01t0563000-02
Chr01	irgsp1_rep	CDS	21426007	21426198	.	+	2	Parent=Os01t0563000-02
Chr01	irgsp1_rep	CDS	21431623	21431712	.	+	2	Parent=Os01t0563000-02
Chr01	irgsp1_rep	CDS	21431817	21432020	.	+	2	Parent=Os01t0563000-02
Chr01	irgsp1_rep	CDS	21433005	21433036	.	+	2	Parent=Os01t0563000-02
Chr01	irgsp1_rep	three_prime_UTR	21433037	21433322	.	+	.	Parent=Os01t0563000-02
Chr01	irgsp1_rep	three_prime_UTR	21438195	21438305	.	+	.	Parent=Os01t0563000-02
Chr01	irgsp1_rep	three_prime_UTR	21440964	21441440	.	+	.	Parent=Os01t0563000-02
Chr01	irgsp1_rep	mRNA	21415066	21424976	.	+	.	ID=Os01t0563000-03;Name=Os01t0563000-03;Locus_id=Os01g0563000;Oryzabase Gene Symbol Synonym(s)=OsFKBP73;Oryzabase Gene Name Synonym(s)=FK506 binding protein 73;Note=Hypothetical conserved gene.;Transcript_evidence=AK065969 (DDBJ%2C Best hit);ORF_evidence=Q657L5 (UniProt);GO=Biological Process: protein folding (GO:0006457);InterPro=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type%2C domain (IPR001179),Peptidyl-prolyl cis-trans isomerase%2C FKBP-type (IPR023566);NIAS_FLcDNA=J013049M24;Oryzabase=10051;Expression=AK065969;TENOR=Os01t0563000-03;KEGG=Os01t0563000-03
Chr01	irgsp1_rep	five_prime_UTR	21415066	21415161	.	+	.	Parent=Os01t0563000-03
Chr01	irgsp1_rep	five_prime_UTR	21415237	21415283	.	+	.	Parent=Os01t0563000-03
Chr01	irgsp1_rep	CDS	21415284	21415515	.	+	0	Parent=Os01t0563000-03
Chr01	irgsp1_rep	CDS	21424262	21424348	.	+	2	Parent=Os01t0563000-03
Chr01	irgsp1_rep	CDS	21424515	21424879	.	+	2	Parent=Os01t0563000-03
Chr01	irgsp1_rep	three_prime_UTR	21424880	21424976	.	+	.	Parent=Os01t0563000-03
Chr01	irgsp1_rep	mRNA	21415236	21441439	.	+	.	ID=Os01t0563000-04;Name=Os01t0563000-04;Locus_id=Os01g0563000;Oryzabase Gene Symbol Synonym(s)=OsFKBP73;Oryzabase Gene Name Synonym(s)=FK506 binding protein 73;Note=Hypothetical conserved gene.;Transcript_evidence=AK099552 (DDBJ%2C Best hit);ORF_evidence=Q657L7 (UniProt);GO=Biological Process: protein folding (GO:0006457);InterPro=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type%2C domain (IPR001179),Elongated TPR repeat-containing domain (IPR023114),Peptidyl-prolyl cis-trans isomerase%2C FKBP-type (IPR023566);NIAS_FLcDNA=J013033I10;Oryzabase=10051;Expression=AK099552;TENOR=Os01t0563000-04;KEGG=Os01t0563000-04
Chr01	irgsp1_rep	five_prime_UTR	21415236	21415283	.	+	.	Parent=Os01t0563000-04
Chr01	irgsp1_rep	CDS	21415284	21415515	.	+	0	Parent=Os01t0563000-04
Chr01	irgsp1_rep	CDS	21424262	21424348	.	+	2	Parent=Os01t0563000-04
Chr01	irgsp1_rep	CDS	21424515	21424790	.	+	2	Parent=Os01t0563000-04
Chr01	irgsp1_rep	CDS	21425450	21425524	.	+	2	Parent=Os01t0563000-04
Chr01	irgsp1_rep	CDS	21425626	21425706	.	+	2	Parent=Os01t0563000-04
Chr01	irgsp1_rep	CDS	21426007	21426198	.	+	2	Parent=Os01t0563000-04
Chr01	irgsp1_rep	CDS	21431623	21431712	.	+	2	Parent=Os01t0563000-04
Chr01	irgsp1_rep	CDS	21431817	21431995	.	+	2	Parent=Os01t0563000-04
Chr01	irgsp1_rep	CDS	21433005	21433322	.	+	0	Parent=Os01t0563000-04
Chr01	irgsp1_rep	CDS	21438195	21438305	.	+	0	Parent=Os01t0563000-04
Chr01	irgsp1_rep	CDS	21440964	21441281	.	+	0	Parent=Os01t0563000-04
Chr01	irgsp1_rep	three_prime_UTR	21441282	21441439	.	+	.	Parent=Os01t0563000-04
Chr01	irgsp1_rep	mRNA	21431638	21441440	.	+	.	ID=Os01t0563000-05;Name=Os01t0563000-05;Locus_id=Os01g0563000;Oryzabase Gene Symbol Synonym(s)=OsFKBP73;Oryzabase Gene Name Synonym(s)=FK506 binding protein 73;Note=Hypothetical conserved gene.;Transcript_evidence=AK061446 (DDBJ%2C Best hit);ORF_evidence=Q657L8 (UniProt);GO=Biological Process: protein folding (GO:0006457);InterPro=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type%2C domain (IPR001179),Peptidyl-prolyl cis-trans isomerase%2C FKBP-type (IPR023566);NIAS_FLcDNA=006-307-D07;Oryzabase=10051;Expression=AK061446;TENOR=Os01t0563000-05;KEGG=Os01t0563000-05 (EC:5.2.1.8)
Chr01	irgsp1_rep	five_prime_UTR	21431638	21431639	.	+	.	Parent=Os01t0563000-05
Chr01	irgsp1_rep	CDS	21431640	21431712	.	+	0	Parent=Os01t0563000-05
Chr01	irgsp1_rep	CDS	21431817	21431995	.	+	2	Parent=Os01t0563000-05
Chr01	irgsp1_rep	CDS	21433005	21433322	.	+	0	Parent=Os01t0563000-05
Chr01	irgsp1_rep	CDS	21438195	21438305	.	+	0	Parent=Os01t0563000-05
Chr01	irgsp1_rep	CDS	21440964	21441281	.	+	0	Parent=Os01t0563000-05
Chr01	irgsp1_rep	three_prime_UTR	21441282	21441440	.	+	.	Parent=Os01t0563000-05
Chr01	irgsp1_rep	mRNA	21433052	21441409	.	+	.	ID=Os01t0563000-06;Name=Os01t0563000-06;Locus_id=Os01g0563000;Oryzabase Gene Symbol Synonym(s)=OsFKBP73;Oryzabase Gene Name Synonym(s)=FK506 binding protein 73;Note=Hypothetical conserved gene.;Transcript_evidence=AK062187 (DDBJ%2C Best hit);ORF_evidence=Q657L8 (UniProt);InterPro=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type (IPR023566);NIAS_FLcDNA=001-046-E06;Oryzabase=10051;Expression=AK062187;TENOR=Os01t0563000-06;KEGG=Os01t0563000-06
Chr01	irgsp1_rep	five_prime_UTR	21433052	21433052	.	+	.	Parent=Os01t0563000-06
Chr01	irgsp1_rep	CDS	21433053	21433322	.	+	0	Parent=Os01t0563000-06
Chr01	irgsp1_rep	CDS	21438195	21438305	.	+	0	Parent=Os01t0563000-06
Chr01	irgsp1_rep	CDS	21440964	21441281	.	+	0	Parent=Os01t0563000-06
Chr01	irgsp1_rep	three_prime_UTR	21441282	21441409	.	+	.	Parent=Os01t0563000-06
Chr01	irgsp1_rep	mRNA	21447489	21450077	.	-	.	ID=Os01t0563500-01;Name=Os01t0563500-01;Locus_id=Os01g0563500;Note=Hypothetical conserved gene.;Transcript_evidence=AK241296 (DDBJ%2C Best hit);ORF_evidence=NP_001172422.1 (RefSeq);NIAS_FLcDNA=J065138N23;TENOR=Os01t0563500-01;KEGG=Os01t0563500-01
Chr01	irgsp1_rep	five_prime_UTR	21450075	21450077	.	-	.	Parent=Os01t0563500-01
Chr01	irgsp1_rep	CDS	21449833	21450074	.	-	0	Parent=Os01t0563500-01
Chr01	irgsp1_rep	CDS	21449594	21449762	.	-	1	Parent=Os01t0563500-01
Chr01	irgsp1_rep	CDS	21449503	21449505	.	-	0	Parent=Os01t0563500-01
Chr01	irgsp1_rep	three_prime_UTR	21449429	21449502	.	-	.	Parent=Os01t0563500-01
Chr01	irgsp1_rep	three_prime_UTR	21448560	21448757	.	-	.	Parent=Os01t0563500-01
Chr01	irgsp1_rep	three_prime_UTR	21447489	21447803	.	-	.	Parent=Os01t0563500-01
Chr01	irgsp1_rep	mRNA	21444283	21449074	.	+	.	ID=Os01t0563700-01;Name=Os01t0563700-01;Locus_id=Os01g0563700;Note=Hypothetical gene.;Transcript_evidence=AK288926 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090082E17;TENOR=Os01t0563700-01;KEGG=Os01t0563700-01
Chr01	irgsp1_rep	five_prime_UTR	21444283	21445050	.	+	.	Parent=Os01t0563700-01
Chr01	irgsp1_rep	CDS	21445051	21445557	.	+	0	Parent=Os01t0563700-01
Chr01	irgsp1_rep	three_prime_UTR	21445558	21449074	.	+	.	Parent=Os01t0563700-01
Chr01	irgsp1_rep	mRNA	21525509	21549819	.	+	.	ID=Os01t0564300-01;Name=Os01t0564300-01;Locus_id=Os01g0564300;Oryzabase Gene Symbol Synonym(s)=OsFKBP46%2C FKBP46;Oryzabase Gene Name Synonym(s)=FK506 binding protein 46;Note=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type domain containing protein.;Transcript_evidence=AK064825 (DDBJ%2C Best hit);ORF_evidence=B9EXK9 (UniProt);GO=Biological Process: protein folding (GO:0006457);InterPro=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type%2C domain (IPR001179),Peptidyl-prolyl cis-trans isomerase%2C FKBP-type (IPR023566);NIAS_FLcDNA=J013000F05;Oryzabase=10042;Expression=AK064825;TENOR=Os01t0564300-01;KEGG=Os01t0564300-01
Chr01	irgsp1_rep	five_prime_UTR	21525509	21525585	.	+	.	Parent=Os01t0564300-01
Chr01	irgsp1_rep	five_prime_UTR	21525812	21525858	.	+	.	Parent=Os01t0564300-01
Chr01	irgsp1_rep	CDS	21525859	21526135	.	+	0	Parent=Os01t0564300-01
Chr01	irgsp1_rep	CDS	21541236	21541322	.	+	2	Parent=Os01t0564300-01
Chr01	irgsp1_rep	CDS	21545072	21545347	.	+	2	Parent=Os01t0564300-01
Chr01	irgsp1_rep	CDS	21545722	21545802	.	+	2	Parent=Os01t0564300-01
Chr01	irgsp1_rep	CDS	21545902	21545982	.	+	2	Parent=Os01t0564300-01
Chr01	irgsp1_rep	CDS	21546940	21547068	.	+	2	Parent=Os01t0564300-01
Chr01	irgsp1_rep	CDS	21548509	21548564	.	+	2	Parent=Os01t0564300-01
Chr01	irgsp1_rep	CDS	21549341	21549622	.	+	0	Parent=Os01t0564300-01
Chr01	irgsp1_rep	three_prime_UTR	21549623	21549819	.	+	.	Parent=Os01t0564300-01
Chr01	irgsp1_rep	mRNA	21534121	21537684	.	-	.	ID=Os01t0564400-01;Name=Os01t0564400-01;Locus_id=Os01g0564400;Note=Conserved hypothetical protein.;Transcript_evidence=AK068728 (DDBJ%2C Best hit);ORF_evidence=NP_001044210.1 (RefSeq);NIAS_FLcDNA=J013160K14;Expression=AK068728;TENOR=Os01t0564400-01;KEGG=Os01t0564400-01
Chr01	irgsp1_rep	five_prime_UTR	21537185	21537684	.	-	.	Parent=Os01t0564400-01
Chr01	irgsp1_rep	five_prime_UTR	21536964	21537039	.	-	.	Parent=Os01t0564400-01
Chr01	irgsp1_rep	five_prime_UTR	21536461	21536885	.	-	.	Parent=Os01t0564400-01
Chr01	irgsp1_rep	CDS	21536266	21536460	.	-	0	Parent=Os01t0564400-01
Chr01	irgsp1_rep	three_prime_UTR	21534121	21536265	.	-	.	Parent=Os01t0564400-01
Chr01	irgsp1_rep	mRNA	21555254	21556833	.	+	.	ID=Os01t0564532-01;Name=Os01t0564532-01;Locus_id=Os01g0564532;Note=Hypothetical gene.;Transcript_evidence=AK241021 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065055M23;TENOR=Os01t0564532-01;KEGG=Os01t0564532-01
Chr01	irgsp1_rep	five_prime_UTR	21555254	21556560	.	+	.	Parent=Os01t0564532-01
Chr01	irgsp1_rep	CDS	21556561	21556806	.	+	0	Parent=Os01t0564532-01
Chr01	irgsp1_rep	three_prime_UTR	21556807	21556833	.	+	.	Parent=Os01t0564532-01
Chr01	irgsp1_rep	mRNA	21555564	21556757	.	-	.	ID=Os01t0564600-00;Name=Os01t0564600-00;Locus_id=Os01g0564600;Note=Protein of unknown function DUF247%2C plant family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001172424.1 (RefSeq);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);TENOR=Os01t0564600-00;KEGG=Os01t0564600-00
Chr01	irgsp1_rep	CDS	21555564	21556757	.	-	0	Parent=Os01t0564600-00
Chr01	irgsp1_rep	mRNA	21603411	21604622	.	-	.	ID=Os01t0564950-00;Name=Os01t0564950-00;Locus_id=Os01g0564950;Note=Protein of unknown function DUF247%2C plant domain containing protein.;Transcript_evidence=AK375832 (DDBJ);ORF_evidence=Q656U6 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);TENOR=Os01t0564950-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	21603411	21604622	.	-	0	Parent=Os01t0564950-00
Chr01	irgsp1_rep	mRNA	21623760	21626735	.	-	.	ID=Os01t0565600-01;Name=Os01t0565600-01;Locus_id=Os01g0565600;Note=Protein of unknown function DUF866%2C eukaryotic family protein.;Transcript_evidence=AK070666 (DDBJ%2C Best hit),AK061216 (DDBJ%2C Best hit);ORF_evidence=E4MX66 (UniProt);InterPro=Protein of unknown function DUF866%2C eukaryotic (IPR008584);NIAS_FLcDNA=J023058O09,006-210-E05;Expression=AK070666;TENOR=Os01t0565600-01;KEGG=Os01t0565600-01
Chr01	irgsp1_rep	five_prime_UTR	21626585	21626735	.	-	.	Parent=Os01t0565600-01
Chr01	irgsp1_rep	CDS	21626483	21626584	.	-	0	Parent=Os01t0565600-01
Chr01	irgsp1_rep	CDS	21626254	21626361	.	-	0	Parent=Os01t0565600-01
Chr01	irgsp1_rep	CDS	21624899	21625066	.	-	0	Parent=Os01t0565600-01
Chr01	irgsp1_rep	CDS	21624113	21624223	.	-	0	Parent=Os01t0565600-01
Chr01	irgsp1_rep	CDS	21623964	21624005	.	-	0	Parent=Os01t0565600-01
Chr01	irgsp1_rep	three_prime_UTR	21623760	21623963	.	-	.	Parent=Os01t0565600-01
Chr01	irgsp1_rep	mRNA	21623761	21626514	.	-	.	ID=Os01t0565600-03;Name=Os01t0565600-03;Locus_id=Os01g0565600;Note=Similar to predicted protein.;Transcript_evidence=AK101472 (DDBJ%2C Best hit);ORF_evidence=E4MX66 (UniProt);InterPro=Protein of unknown function DUF866%2C eukaryotic (IPR008584);NIAS_FLcDNA=J033040K17;Expression=AK101472;TENOR=Os01t0565600-03;KEGG=Os01t0565600-03
Chr01	irgsp1_rep	CDS	21626254	21626514	.	-	0	Parent=Os01t0565600-03
Chr01	irgsp1_rep	CDS	21624899	21625066	.	-	0	Parent=Os01t0565600-03
Chr01	irgsp1_rep	CDS	21624113	21624223	.	-	0	Parent=Os01t0565600-03
Chr01	irgsp1_rep	CDS	21623964	21624005	.	-	0	Parent=Os01t0565600-03
Chr01	irgsp1_rep	three_prime_UTR	21623761	21623963	.	-	.	Parent=Os01t0565600-03
Chr01	irgsp1_rep	mRNA	21628898	21630661	.	-	.	ID=Os01t0565800-00;Name=Os01t0565800-00;Locus_id=Os01g0565800;Note=Protein of unknown function DUF538 family protein.;Transcript_evidence=BT068662 (DDBJ);ORF_evidence=B6T420 (UniProt);InterPro=Protein of unknown function DUF538 (IPR007493);TENOR=Os01t0565800-00;KEGG=Os01t0565800-00
Chr01	irgsp1_rep	five_prime_UTR	21630624	21630661	.	-	.	Parent=Os01t0565800-00
Chr01	irgsp1_rep	CDS	21630537	21630623	.	-	0	Parent=Os01t0565800-00
Chr01	irgsp1_rep	CDS	21629567	21629621	.	-	0	Parent=Os01t0565800-00
Chr01	irgsp1_rep	CDS	21628899	21629269	.	-	2	Parent=Os01t0565800-00
Chr01	irgsp1_rep	three_prime_UTR	21628898	21628898	.	-	.	Parent=Os01t0565800-00
Chr01	irgsp1_rep	mRNA	21631182	21633086	.	+	.	ID=Os01t0565900-01;Name=Os01t0565900-01;Locus_id=Os01g0565900;Note=Similar to Protein transport protein Sec61 beta subunit.;Transcript_evidence=AK065822 (DDBJ%2C Best hit);ORF_evidence=NP_001151814.1 (RefSeq);InterPro=Preprotein translocase Sec%2C Sec61-beta subunit (IPR005609),Preprotein translocase Sec%2C Sec61-beta subunit%2C eukarya (IPR016482);NIAS_FLcDNA=J013042A04;Expression=AK065822;TENOR=Os01t0565900-01;KEGG=Os01t0565900-01
Chr01	irgsp1_rep	five_prime_UTR	21631182	21632406	.	+	.	Parent=Os01t0565900-01
Chr01	irgsp1_rep	CDS	21632407	21632649	.	+	0	Parent=Os01t0565900-01
Chr01	irgsp1_rep	three_prime_UTR	21632650	21633086	.	+	.	Parent=Os01t0565900-01
Chr01	irgsp1_rep	mRNA	21632670	21633045	.	+	.	ID=Os01t0565900-02;Name=Os01t0565900-02;Locus_id=Os01g0565900;Note=Non-protein coding transcript.;Transcript_evidence=AK061615 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-033-C02;TENOR=Os01t0565900-02
Chr01	irgsp1_rep	exon	21632670	21633045	.	+	.	Parent=Os01t0565900-02
Chr01	irgsp1_rep	mRNA	21633972	21635454	.	+	.	ID=Os01t0566000-01;Name=Os01t0566000-01;Locus_id=Os01g0566000;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK107516 (DDBJ%2C Best hit);ORF_evidence=A2WRI0 (UniProt);NIAS_FLcDNA=002-129-F04;Expression=AK107516;TENOR=Os01t0566000-01;KEGG=Os01t0566000-01
Chr01	irgsp1_rep	five_prime_UTR	21633972	21634112	.	+	.	Parent=Os01t0566000-01
Chr01	irgsp1_rep	CDS	21634113	21635078	.	+	0	Parent=Os01t0566000-01
Chr01	irgsp1_rep	three_prime_UTR	21635079	21635454	.	+	.	Parent=Os01t0566000-01
Chr01	irgsp1_rep	mRNA	21639932	21643059	.	-	.	ID=Os01t0566100-01;Name=Os01t0566100-01;Locus_id=Os01g0566100;CGSNL Gene Symbol=ELF3.2;CGSNL Gene Name=EARLY FLOWERING 3.2;Oryzabase Gene Symbol Synonym(s)=ELF3_Chr.1%2C OsELF3.2%2C ELF3.2;Oryzabase Gene Name Synonym(s)=EARLY FLOWERING3.2%2C ELF3 homolog 2;Note=Conserved hypothetical protein.;Transcript_evidence=AK065173 (DDBJ%2C Best hit);ORF_evidence=B9EXL0 (UniProt);NIAS_FLcDNA=J013002C23;Oryzabase=19302;Expression=AK065173;TENOR=Os01t0566100-01;KEGG=Os01t0566100-01
Chr01	irgsp1_rep	five_prime_UTR	21642873	21643059	.	-	.	Parent=Os01t0566100-01
Chr01	irgsp1_rep	CDS	21642627	21642872	.	-	0	Parent=Os01t0566100-01
Chr01	irgsp1_rep	CDS	21640235	21641179	.	-	0	Parent=Os01t0566100-01
Chr01	irgsp1_rep	three_prime_UTR	21639932	21640234	.	-	.	Parent=Os01t0566100-01
Chr01	irgsp1_rep	mRNA	21637031	21643111	.	-	.	ID=Os01t0566100-02;Name=Os01t0566100-02;Locus_id=Os01g0566100;RAP-DB Gene Symbol Synonym(s)=OsELF3.2%2C ELF3_Chr.1%2C OsELF3-2;RAP-DB Gene Name Synonym(s)=Early Flowering3.2;CGSNL Gene Symbol=ELF3.2;CGSNL Gene Name=EARLY FLOWERING 3.2;Oryzabase Gene Symbol Synonym(s)=ELF3_Chr.1%2C OsELF3.2%2C ELF3.2;Oryzabase Gene Name Synonym(s)=EARLY FLOWERING3.2%2C ELF3 homolog 2;Note=Ortholog of Arabidopsis ELF3%2C Regulation of flowering time;Transcript_evidence=Inferred from literature;ORF_evidence=Q657D6;Manual Curation=September 8%2C 2017;Literature_PMID=27380315,25757473,22912900,17132630;Oryzabase=19302
Chr01	irgsp1_rep	five_prime_UTR	21642873	21643111	.	-	.	Parent=Os01t0566100-02
Chr01	irgsp1_rep	CDS	21642627	21642872	.	-	0	Parent=Os01t0566100-02
Chr01	irgsp1_rep	CDS	21640239	21641179	.	-	0	Parent=Os01t0566100-02
Chr01	irgsp1_rep	CDS	21638516	21638567	.	-	1	Parent=Os01t0566100-02
Chr01	irgsp1_rep	CDS	21637395	21638384	.	-	0	Parent=Os01t0566100-02
Chr01	irgsp1_rep	three_prime_UTR	21637031	21637394	.	-	.	Parent=Os01t0566100-02
Chr01	irgsp1_rep	mRNA	21661408	21662162	.	-	.	ID=Os01t0566200-01;Name=Os01t0566200-01;Locus_id=Os01g0566200;Note=Hypothetical protein.;Transcript_evidence=AK106499 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-105-E06;Expression=AK106499;TENOR=Os01t0566200-01;KEGG=Os01t0566200-01
Chr01	irgsp1_rep	five_prime_UTR	21662150	21662162	.	-	.	Parent=Os01t0566200-01
Chr01	irgsp1_rep	CDS	21661829	21662149	.	-	0	Parent=Os01t0566200-01
Chr01	irgsp1_rep	three_prime_UTR	21661408	21661828	.	-	.	Parent=Os01t0566200-01
Chr01	irgsp1_rep	mRNA	21665759	21668304	.	-	.	ID=Os01t0566500-01;Name=Os01t0566500-01;Locus_id=Os01g0566500;Oryzabase Gene Symbol Synonym(s)=OsCCD8a%2C OsCCD8c%2C CCD8a%2C CCD8c;Oryzabase Gene Name Synonym(s)=carotenoid cleavage dioxygenase 8a%2C CATOTENOID DIOXYGENASE 8a%2C D10like;Note=Similar to Dioxygenase RAMOSUS1.;Transcript_evidence=AK058473 (DDBJ%2C Best hit);ORF_evidence=NP_195007.2 (RefSeq);InterPro=Carotenoid oxygenase (IPR004294);NIAS_FLcDNA=001-016-B12;Oryzabase=15533;Expression=AK058473;TENOR=Os01t0566500-01;KEGG=Os01t0566500-01
Chr01	irgsp1_rep	five_prime_UTR	21668281	21668304	.	-	.	Parent=Os01t0566500-01
Chr01	irgsp1_rep	CDS	21668008	21668280	.	-	0	Parent=Os01t0566500-01
Chr01	irgsp1_rep	CDS	21667158	21667913	.	-	0	Parent=Os01t0566500-01
Chr01	irgsp1_rep	CDS	21666884	21667068	.	-	0	Parent=Os01t0566500-01
Chr01	irgsp1_rep	CDS	21666257	21666549	.	-	1	Parent=Os01t0566500-01
Chr01	irgsp1_rep	CDS	21665863	21666014	.	-	2	Parent=Os01t0566500-01
Chr01	irgsp1_rep	three_prime_UTR	21665759	21665862	.	-	.	Parent=Os01t0566500-01
Chr01	irgsp1_rep	mRNA	21687437	21687759	.	-	.	ID=Os01t0566701-00;Name=Os01t0566701-00;Locus_id=Os01g0566701;Note=Non-protein coding transcript.;Transcript_evidence=CT834941 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os01t0566701-00
Chr01	irgsp1_rep	exon	21687437	21687759	.	-	.	Parent=Os01t0566701-00
Chr01	irgsp1_rep	mRNA	21687799	21689199	.	-	.	ID=Os01t0566800-00;Name=Os01t0566800-00;Locus_id=Os01g0566800;CGSNL Gene Symbol=BHLH117;CGSNL Gene Name=BASIC HELIX-LOOP-HELIX PROTEIN 117;Oryzabase Gene Symbol Synonym(s)=OsbHLH117%2C bHLH117;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 117;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001043364.2 (RefSeq);InterPro=Helix-loop-helix DNA-binding (IPR011598);Oryzabase=15397;TENOR=Os01t0566800-00;KEGG=Os01t0566800-00
Chr01	irgsp1_rep	CDS	21687799	21689199	.	-	0	Parent=Os01t0566800-00
Chr01	irgsp1_rep	mRNA	21699002	21704182	.	-	.	ID=Os01t0566900-01;Name=Os01t0566900-01;Locus_id=Os01g0566900;Note=Similar to 3'-5' exonuclease domain-containing protein-like.;Transcript_evidence=AK100223 (DDBJ%2C Best hit);ORF_evidence=Q2V9B5 (UniProt);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723),Molecular Function: 3'-5' exonuclease activity (GO:0008408);InterPro=3'-5' exonuclease (IPR002562),K Homology (IPR004087),K Homology%2C type 1 (IPR004088),Ribonuclease H-like (IPR012337),K Homology%2C type 1%2C subgroup (IPR018111);NIAS_FLcDNA=J023047H21;TENOR=Os01t0566900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	21704118	21704182	.	-	.	Parent=Os01t0566900-01
Chr01	irgsp1_rep	CDS	21704051	21704117	.	-	0	Parent=Os01t0566900-01
Chr01	irgsp1_rep	CDS	21703235	21703389	.	-	2	Parent=Os01t0566900-01
Chr01	irgsp1_rep	CDS	21702678	21702809	.	-	0	Parent=Os01t0566900-01
Chr01	irgsp1_rep	CDS	21702527	21702577	.	-	0	Parent=Os01t0566900-01
Chr01	irgsp1_rep	CDS	21702022	21702118	.	-	0	Parent=Os01t0566900-01
Chr01	irgsp1_rep	CDS	21701092	21701138	.	-	2	Parent=Os01t0566900-01
Chr01	irgsp1_rep	CDS	21700702	21700918	.	-	0	Parent=Os01t0566900-01
Chr01	irgsp1_rep	CDS	21700215	21700344	.	-	2	Parent=Os01t0566900-01
Chr01	irgsp1_rep	CDS	21700076	21700118	.	-	1	Parent=Os01t0566900-01
Chr01	irgsp1_rep	CDS	21699167	21699241	.	-	0	Parent=Os01t0566900-01
Chr01	irgsp1_rep	three_prime_UTR	21699002	21699166	.	-	.	Parent=Os01t0566900-01
Chr01	irgsp1_rep	mRNA	21713732	21714949	.	+	.	ID=Os01t0567200-01;Name=Os01t0567200-01;Locus_id=Os01g0567200;Note=Protein of unknown function DUF3778 domain containing protein.;Transcript_evidence=AK071488 (DDBJ%2C Best hit);ORF_evidence=NP_001172123.1 (RefSeq);InterPro=Protein of unknown function DUF3778 (IPR022256);NIAS_FLcDNA=J023099J04;Expression=AK071488;TENOR=Os01t0567200-01;KEGG=Os01t0567200-01
Chr01	irgsp1_rep	five_prime_UTR	21713732	21713962	.	+	.	Parent=Os01t0567200-01
Chr01	irgsp1_rep	CDS	21713963	21714781	.	+	0	Parent=Os01t0567200-01
Chr01	irgsp1_rep	three_prime_UTR	21714782	21714949	.	+	.	Parent=Os01t0567200-01
Chr01	irgsp1_rep	mRNA	21716142	21716605	.	-	.	ID=Os01t0567400-00;Name=Os01t0567400-00;Locus_id=Os01g0567400;Note=Protein of unknown function DUF3511 domain containing protein.;Transcript_evidence=AK373709 (DDBJ);ORF_evidence=NP_001043368.1 (RefSeq);InterPro=Protein of unknown function DUF3511 (IPR021899);TENOR=Os01t0567400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	21716156	21716605	.	-	0	Parent=Os01t0567400-00
Chr01	irgsp1_rep	three_prime_UTR	21716142	21716155	.	-	.	Parent=Os01t0567400-00
Chr01	irgsp1_rep	mRNA	21719861	21722018	.	+	.	ID=Os01t0567500-01;Name=Os01t0567500-01;Locus_id=Os01g0567500;CGSNL Gene Symbol=MST8;CGSNL Gene Name=MONOSACCHARIDE TRANSPORTER 8;Oryzabase Gene Symbol Synonym(s)=OsMST8%2C OSMST8;Oryzabase Gene Name Synonym(s)=Monosaccharide transporter 8;Note=Similar to Monosaccharide transporter 3.;Transcript_evidence=AK069327 (DDBJ%2C Best hit);ORF_evidence=NP_001148007.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J023015H11;Oryzabase=11683;Expression=AK069327;TENOR=Os01t0567500-01;KEGG=Os01t0567500-01
Chr01	irgsp1_rep	five_prime_UTR	21719861	21719945	.	+	.	Parent=Os01t0567500-01
Chr01	irgsp1_rep	CDS	21719946	21720081	.	+	0	Parent=Os01t0567500-01
Chr01	irgsp1_rep	CDS	21720165	21720487	.	+	2	Parent=Os01t0567500-01
Chr01	irgsp1_rep	CDS	21720779	21721408	.	+	0	Parent=Os01t0567500-01
Chr01	irgsp1_rep	CDS	21721492	21721944	.	+	0	Parent=Os01t0567500-01
Chr01	irgsp1_rep	three_prime_UTR	21721945	21722018	.	+	.	Parent=Os01t0567500-01
Chr01	irgsp1_rep	mRNA	21720000	21721903	.	-	.	ID=Os01t0567533-00;Name=Os01t0567533-00;Locus_id=Os01g0567533;Note=Hypothetical protein.;Transcript_evidence=tplb0053a05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0567533-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	21721548	21721903	.	-	.	Parent=Os01t0567533-00
Chr01	irgsp1_rep	CDS	21721490	21721547	.	-	0	Parent=Os01t0567533-00
Chr01	irgsp1_rep	CDS	21720764	21721398	.	-	2	Parent=Os01t0567533-00
Chr01	irgsp1_rep	CDS	21720298	21720474	.	-	0	Parent=Os01t0567533-00
Chr01	irgsp1_rep	three_prime_UTR	21720162	21720297	.	-	.	Parent=Os01t0567533-00
Chr01	irgsp1_rep	three_prime_UTR	21720000	21720078	.	-	.	Parent=Os01t0567533-00
Chr01	irgsp1_rep	mRNA	21724008	21725863	.	-	.	ID=Os01t0567600-00;Name=Os01t0567600-00;Locus_id=Os01g0567600;CGSNL Gene Symbol=MST7;CGSNL Gene Name=MONOSACCHARIDE TRANSPORTER 7;Oryzabase Gene Symbol Synonym(s)=OsMST7%2C OSMST7;Oryzabase Gene Name Synonym(s)=Monosaccharide transporter 7;Note=Similar to Monosaccharide transporter 3.;Transcript_evidence=AY643749 (DDBJ%2C Best hit);ORF_evidence=NP_001148007.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);Oryzabase=11684;Expression=AY643749;TENOR=Os01t0567600-00;KEGG=Os01t0567600-00
Chr01	irgsp1_rep	CDS	21725734	21725863	.	-	0	Parent=Os01t0567600-00
Chr01	irgsp1_rep	CDS	21725317	21725639	.	-	2	Parent=Os01t0567600-00
Chr01	irgsp1_rep	CDS	21724557	21725186	.	-	0	Parent=Os01t0567600-00
Chr01	irgsp1_rep	CDS	21724008	21724463	.	-	0	Parent=Os01t0567600-00
Chr01	irgsp1_rep	mRNA	21837626	21839347	.	-	.	ID=Os01t0568400-00;Name=Os01t0568400-00;Locus_id=Os01g0568400;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8S1B2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os01t0568400-00;KEGG=Os01t0568400-00 (EC:2.7.11.1)
Chr01	irgsp1_rep	CDS	21839314	21839347	.	-	0	Parent=Os01t0568400-00
Chr01	irgsp1_rep	CDS	21838724	21838970	.	-	2	Parent=Os01t0568400-00
Chr01	irgsp1_rep	CDS	21838450	21838552	.	-	1	Parent=Os01t0568400-00
Chr01	irgsp1_rep	CDS	21837626	21837925	.	-	0	Parent=Os01t0568400-00
Chr01	irgsp1_rep	mRNA	21789247	21797054	.	-	.	ID=Os01t0568800-00;Name=Os01t0568800-00;Locus_id=Os01g0568800;CGSNL Gene Symbol=RLCK37;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 37;Oryzabase Gene Symbol Synonym(s)=OsRLCK37;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 37;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK362681 (DDBJ);ORF_evidence=A2WRK5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Gnk2-homologous domain (IPR002902),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18754;TENOR=Os01t0568800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	21796545	21797054	.	-	0	Parent=Os01t0568800-00
Chr01	irgsp1_rep	CDS	21796245	21796492	.	-	0	Parent=Os01t0568800-00
Chr01	irgsp1_rep	CDS	21795505	21795652	.	-	1	Parent=Os01t0568800-00
Chr01	irgsp1_rep	CDS	21790680	21790890	.	-	0	Parent=Os01t0568800-00
Chr01	irgsp1_rep	CDS	21790334	21790577	.	-	2	Parent=Os01t0568800-00
Chr01	irgsp1_rep	CDS	21789247	21789493	.	-	1	Parent=Os01t0568800-00
Chr01	irgsp1_rep	mRNA	21805322	21810098	.	+	.	ID=Os01t0568950-00;Name=Os01t0568950-00;Locus_id=Os01g0568950;Note=Similar to barren inflorescence2.;Transcript_evidence=BT085965 (DDBJ);ORF_evidence=NP_001106051.1 (RefSeq);TENOR=Os01t0568950-00
Chr01	irgsp1_rep	CDS	21805322	21805799	.	+	0	Parent=Os01t0568950-00
Chr01	irgsp1_rep	CDS	21809887	21810095	.	+	2	Parent=Os01t0568950-00
Chr01	irgsp1_rep	three_prime_UTR	21810096	21810098	.	+	.	Parent=Os01t0568950-00
Chr01	irgsp1_rep	mRNA	21814796	21817900	.	+	.	ID=Os01t0569200-00;Name=Os01t0569200-00;Locus_id=Os01g0569200;Note=Domain of unknown function DUF1618 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001043371.2 (RefSeq);InterPro=Domain of unknown function DUF1618 (IPR011676);TENOR=Os01t0569200-00
Chr01	irgsp1_rep	CDS	21814796	21815635	.	+	0	Parent=Os01t0569200-00
Chr01	irgsp1_rep	CDS	21815796	21816362	.	+	0	Parent=Os01t0569200-00
Chr01	irgsp1_rep	CDS	21817757	21817900	.	+	0	Parent=Os01t0569200-00
Chr01	irgsp1_rep	mRNA	21849744	21849981	.	+	.	ID=Os01t0569450-00;Name=Os01t0569450-00;Locus_id=Os01g0569450;Note=Non-protein coding transcript.;Transcript_evidence=BT087035 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0569450-00
Chr01	irgsp1_rep	exon	21849744	21849981	.	+	.	Parent=Os01t0569450-00
Chr01	irgsp1_rep	mRNA	21831960	21835149	.	-	.	ID=Os01t0569800-01;Name=Os01t0569800-01;Locus_id=Os01g0569800;Note=Conserved hypothetical protein.;Transcript_evidence=AK288739 (DDBJ%2C Best hit);ORF_evidence=Q6Z066 (UniProt);NIAS_FLcDNA=J090063N20;TENOR=Os01t0569800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	21832152	21835149	.	-	.	Parent=Os01t0569800-01
Chr01	irgsp1_rep	CDS	21831969	21832151	.	-	0	Parent=Os01t0569800-01
Chr01	irgsp1_rep	three_prime_UTR	21831960	21831968	.	-	.	Parent=Os01t0569800-01
Chr01	irgsp1_rep	mRNA	21878990	21883604	.	+	.	ID=Os01t0570500-01;Name=Os01t0570500-01;Locus_id=Os01g0570500;Note=Similar to Dual specificity kinase 1.;Transcript_evidence=AK111703 (DDBJ%2C Best hit);ORF_evidence=A2I5G0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023011C07;Expression=AK111703;TENOR=Os01t0570500-01;KEGG=Os01t0570500-01 (EC:2.7.11.1)
Chr01	irgsp1_rep	five_prime_UTR	21878990	21879265	.	+	.	Parent=Os01t0570500-01
Chr01	irgsp1_rep	CDS	21879266	21879341	.	+	0	Parent=Os01t0570500-01
Chr01	irgsp1_rep	CDS	21879460	21879500	.	+	2	Parent=Os01t0570500-01
Chr01	irgsp1_rep	CDS	21880135	21880204	.	+	0	Parent=Os01t0570500-01
Chr01	irgsp1_rep	CDS	21880300	21880448	.	+	2	Parent=Os01t0570500-01
Chr01	irgsp1_rep	CDS	21880561	21880656	.	+	0	Parent=Os01t0570500-01
Chr01	irgsp1_rep	CDS	21880753	21880823	.	+	0	Parent=Os01t0570500-01
Chr01	irgsp1_rep	CDS	21881096	21881157	.	+	1	Parent=Os01t0570500-01
Chr01	irgsp1_rep	CDS	21881290	21881353	.	+	2	Parent=Os01t0570500-01
Chr01	irgsp1_rep	CDS	21881437	21881521	.	+	1	Parent=Os01t0570500-01
Chr01	irgsp1_rep	CDS	21881600	21881726	.	+	0	Parent=Os01t0570500-01
Chr01	irgsp1_rep	CDS	21881803	21881885	.	+	2	Parent=Os01t0570500-01
Chr01	irgsp1_rep	CDS	21881969	21882029	.	+	0	Parent=Os01t0570500-01
Chr01	irgsp1_rep	CDS	21882895	21883034	.	+	2	Parent=Os01t0570500-01
Chr01	irgsp1_rep	CDS	21883156	21883449	.	+	0	Parent=Os01t0570500-01
Chr01	irgsp1_rep	three_prime_UTR	21883450	21883604	.	+	.	Parent=Os01t0570500-01
Chr01	irgsp1_rep	mRNA	21879080	21883878	.	+	.	ID=Os01t0570500-02;Name=Os01t0570500-02;Locus_id=Os01g0570500;Note=Similar to Casein kinase.;Transcript_evidence=AK111922 (DDBJ%2C Best hit);ORF_evidence=A2I5G0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-013-B03;Expression=AK111922;TENOR=Os01t0570500-02;KEGG=Os01t0570500-02 (EC:2.7.11.1)
Chr01	irgsp1_rep	five_prime_UTR	21879080	21879265	.	+	.	Parent=Os01t0570500-02
Chr01	irgsp1_rep	CDS	21879266	21879341	.	+	0	Parent=Os01t0570500-02
Chr01	irgsp1_rep	CDS	21879460	21879500	.	+	2	Parent=Os01t0570500-02
Chr01	irgsp1_rep	CDS	21880135	21880204	.	+	0	Parent=Os01t0570500-02
Chr01	irgsp1_rep	CDS	21880300	21880448	.	+	2	Parent=Os01t0570500-02
Chr01	irgsp1_rep	CDS	21880561	21880656	.	+	0	Parent=Os01t0570500-02
Chr01	irgsp1_rep	CDS	21880753	21880823	.	+	0	Parent=Os01t0570500-02
Chr01	irgsp1_rep	CDS	21881096	21881157	.	+	1	Parent=Os01t0570500-02
Chr01	irgsp1_rep	CDS	21881290	21881353	.	+	2	Parent=Os01t0570500-02
Chr01	irgsp1_rep	CDS	21881437	21881484	.	+	1	Parent=Os01t0570500-02
Chr01	irgsp1_rep	CDS	21883649	21883658	.	+	1	Parent=Os01t0570500-02
Chr01	irgsp1_rep	three_prime_UTR	21883659	21883878	.	+	.	Parent=Os01t0570500-02
Chr01	irgsp1_rep	mRNA	21879146	21883604	.	+	.	ID=Os01t0570500-03;Name=Os01t0570500-03;Locus_id=Os01g0570500;Note=Hypothetical conserved gene.;Transcript_evidence=AK111702 (DDBJ%2C Best hit);ORF_evidence=Q656Y1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023013G21;Expression=AK111702;TENOR=Os01t0570500-03;KEGG=Os01t0570500-03 (EC:2.7.11.1)
Chr01	irgsp1_rep	five_prime_UTR	21879146	21879265	.	+	.	Parent=Os01t0570500-03
Chr01	irgsp1_rep	CDS	21879266	21879341	.	+	0	Parent=Os01t0570500-03
Chr01	irgsp1_rep	CDS	21879460	21879500	.	+	2	Parent=Os01t0570500-03
Chr01	irgsp1_rep	CDS	21880135	21880204	.	+	0	Parent=Os01t0570500-03
Chr01	irgsp1_rep	CDS	21880300	21880448	.	+	2	Parent=Os01t0570500-03
Chr01	irgsp1_rep	CDS	21880561	21880656	.	+	0	Parent=Os01t0570500-03
Chr01	irgsp1_rep	CDS	21880753	21880827	.	+	0	Parent=Os01t0570500-03
Chr01	irgsp1_rep	three_prime_UTR	21880828	21881157	.	+	.	Parent=Os01t0570500-03
Chr01	irgsp1_rep	three_prime_UTR	21881290	21881353	.	+	.	Parent=Os01t0570500-03
Chr01	irgsp1_rep	three_prime_UTR	21881437	21881521	.	+	.	Parent=Os01t0570500-03
Chr01	irgsp1_rep	three_prime_UTR	21881600	21881726	.	+	.	Parent=Os01t0570500-03
Chr01	irgsp1_rep	three_prime_UTR	21881803	21881885	.	+	.	Parent=Os01t0570500-03
Chr01	irgsp1_rep	three_prime_UTR	21881969	21883604	.	+	.	Parent=Os01t0570500-03
Chr01	irgsp1_rep	mRNA	21881298	21883943	.	+	.	ID=Os01t0570500-04;Name=Os01t0570500-04;Locus_id=Os01g0570500;Note=Similar to predicted protein.;Transcript_evidence=AK111947 (DDBJ%2C Best hit);ORF_evidence=A2I5G0 (UniProt);GO=Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009);NIAS_FLcDNA=001-024-E09;Expression=AK111947;TENOR=Os01t0570500-04;KEGG=Os01t0570500-04 (EC:2.7.11.1)
Chr01	irgsp1_rep	CDS	21881298	21881353	.	+	0	Parent=Os01t0570500-04
Chr01	irgsp1_rep	CDS	21881437	21881521	.	+	1	Parent=Os01t0570500-04
Chr01	irgsp1_rep	CDS	21881600	21881726	.	+	0	Parent=Os01t0570500-04
Chr01	irgsp1_rep	CDS	21881803	21881885	.	+	2	Parent=Os01t0570500-04
Chr01	irgsp1_rep	CDS	21881969	21882029	.	+	0	Parent=Os01t0570500-04
Chr01	irgsp1_rep	CDS	21882895	21883034	.	+	2	Parent=Os01t0570500-04
Chr01	irgsp1_rep	CDS	21883156	21883449	.	+	0	Parent=Os01t0570500-04
Chr01	irgsp1_rep	three_prime_UTR	21883450	21883943	.	+	.	Parent=Os01t0570500-04
Chr01	irgsp1_rep	mRNA	21886899	21887840	.	-	.	ID=Os01t0570601-00;Name=Os01t0570601-00;Locus_id=Os01g0570601;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2WRL2 (UniProt);TENOR=Os01t0570601-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	21886899	21887840	.	-	0	Parent=Os01t0570601-00
Chr01	irgsp1_rep	mRNA	21896614	21897709	.	+	.	ID=Os01t0570700-01;Name=Os01t0570700-01;Locus_id=Os01g0570700;Note=Carbamoyl-phosphate synthetase%2C large subunit%2C ATP-binding domain containing protein.;Transcript_evidence=AK061023 (DDBJ%2C Best hit);ORF_evidence=B9EXM2 (UniProt);GO=Biological Process: nitrogen compound metabolic process (GO:0006807),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524),Molecular Function: ligase activity (GO:0016874),Molecular Function: metal ion binding (GO:0046872);InterPro=Carbamoyl-phosphate synthetase%2C large subunit%2C ATP-binding (IPR005479),Carbamoyl-phosphate synthase%2C large subunit%2C CPS-domain (IPR005483),Methylglyoxal synthase-like domain (IPR011607),ATP-grasp fold (IPR011761),ATP-grasp fold%2C subdomain 2 (IPR013816);NIAS_FLcDNA=006-204-D04;TENOR=Os01t0570700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	21896614	21896614	.	+	.	Parent=Os01t0570700-01
Chr01	irgsp1_rep	CDS	21896615	21897595	.	+	0	Parent=Os01t0570700-01
Chr01	irgsp1_rep	three_prime_UTR	21897596	21897709	.	+	.	Parent=Os01t0570700-01
Chr01	irgsp1_rep	mRNA	21900067	21903103	.	-	.	ID=Os01t0570800-01;Name=Os01t0570800-01;Locus_id=Os01g0570800;Note=IQ calmodulin-binding region domain containing protein.;Transcript_evidence=AK099914 (DDBJ%2C Best hit),AK072379 (DDBJ%2C Best hit);ORF_evidence=B1B5J2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);NIAS_FLcDNA=J013116E17,J023073F24;TENOR=Os01t0570800-01
Chr01	irgsp1_rep	five_prime_UTR	21903008	21903103	.	-	.	Parent=Os01t0570800-01
Chr01	irgsp1_rep	five_prime_UTR	21902594	21902652	.	-	.	Parent=Os01t0570800-01
Chr01	irgsp1_rep	CDS	21901922	21902593	.	-	0	Parent=Os01t0570800-01
Chr01	irgsp1_rep	CDS	21901727	21901815	.	-	0	Parent=Os01t0570800-01
Chr01	irgsp1_rep	CDS	21901531	21901618	.	-	1	Parent=Os01t0570800-01
Chr01	irgsp1_rep	CDS	21901295	21901432	.	-	0	Parent=Os01t0570800-01
Chr01	irgsp1_rep	CDS	21900988	21901182	.	-	0	Parent=Os01t0570800-01
Chr01	irgsp1_rep	CDS	21900368	21900895	.	-	0	Parent=Os01t0570800-01
Chr01	irgsp1_rep	three_prime_UTR	21900067	21900367	.	-	.	Parent=Os01t0570800-01
Chr01	irgsp1_rep	mRNA	21918054	21921554	.	+	.	ID=Os01t0571000-01;Name=Os01t0571000-01;Locus_id=Os01g0571000;Note=Mitochondrial carrier protein domain containing protein.;Transcript_evidence=AK066090 (DDBJ%2C Best hit);ORF_evidence=Q8S1A3 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial inner membrane (GO:0005743),Molecular Function: binding (GO:0005488);InterPro=Mitochondrial carrier protein (IPR002067),Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J013058K24;Expression=AK066090;TENOR=Os01t0571000-01;KEGG=Os01t0571000-01
Chr01	irgsp1_rep	five_prime_UTR	21918054	21918157	.	+	.	Parent=Os01t0571000-01
Chr01	irgsp1_rep	CDS	21918158	21918271	.	+	0	Parent=Os01t0571000-01
Chr01	irgsp1_rep	CDS	21919029	21919058	.	+	0	Parent=Os01t0571000-01
Chr01	irgsp1_rep	CDS	21919158	21919243	.	+	0	Parent=Os01t0571000-01
Chr01	irgsp1_rep	CDS	21919336	21919546	.	+	1	Parent=Os01t0571000-01
Chr01	irgsp1_rep	CDS	21919759	21919888	.	+	0	Parent=Os01t0571000-01
Chr01	irgsp1_rep	CDS	21920630	21920814	.	+	2	Parent=Os01t0571000-01
Chr01	irgsp1_rep	CDS	21920904	21921035	.	+	0	Parent=Os01t0571000-01
Chr01	irgsp1_rep	CDS	21921219	21921323	.	+	0	Parent=Os01t0571000-01
Chr01	irgsp1_rep	three_prime_UTR	21921324	21921554	.	+	.	Parent=Os01t0571000-01
Chr01	irgsp1_rep	mRNA	21918189	21921550	.	+	.	ID=Os01t0571000-02;Name=Os01t0571000-02;Locus_id=Os01g0571000;Note=Similar to Grave disease carrier protein.;Transcript_evidence=AK121334 (DDBJ%2C Best hit);ORF_evidence=B7EBR7 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial inner membrane (GO:0005743),Molecular Function: binding (GO:0005488);InterPro=Mitochondrial carrier protein (IPR002067),Graves disease carrier protein (IPR002167),Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J023119K09;Expression=AK121334;TENOR=Os01t0571000-02;KEGG=Os01t0571000-02
Chr01	irgsp1_rep	five_prime_UTR	21918189	21918884	.	+	.	Parent=Os01t0571000-02
Chr01	irgsp1_rep	CDS	21918885	21919058	.	+	0	Parent=Os01t0571000-02
Chr01	irgsp1_rep	CDS	21919158	21919243	.	+	0	Parent=Os01t0571000-02
Chr01	irgsp1_rep	CDS	21919336	21919546	.	+	1	Parent=Os01t0571000-02
Chr01	irgsp1_rep	CDS	21919759	21919888	.	+	0	Parent=Os01t0571000-02
Chr01	irgsp1_rep	CDS	21920630	21920814	.	+	2	Parent=Os01t0571000-02
Chr01	irgsp1_rep	CDS	21920904	21921035	.	+	0	Parent=Os01t0571000-02
Chr01	irgsp1_rep	CDS	21921219	21921323	.	+	0	Parent=Os01t0571000-02
Chr01	irgsp1_rep	three_prime_UTR	21921324	21921550	.	+	.	Parent=Os01t0571000-02
Chr01	irgsp1_rep	mRNA	21922042	21923916	.	-	.	ID=Os01t0571100-01;Name=Os01t0571100-01;Locus_id=Os01g0571100;Note=Similar to gibberellin responsive1.;Transcript_evidence=AK068093 (DDBJ%2C Best hit);ORF_evidence=NP_001105551.1 (RefSeq);NIAS_FLcDNA=J013134O11;TENOR=Os01t0571100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	21923805	21923916	.	-	.	Parent=Os01t0571100-01
Chr01	irgsp1_rep	CDS	21923801	21923804	.	-	0	Parent=Os01t0571100-01
Chr01	irgsp1_rep	CDS	21922893	21923054	.	-	2	Parent=Os01t0571100-01
Chr01	irgsp1_rep	CDS	21922306	21922652	.	-	2	Parent=Os01t0571100-01
Chr01	irgsp1_rep	three_prime_UTR	21922042	21922305	.	-	.	Parent=Os01t0571100-01
Chr01	irgsp1_rep	mRNA	21922193	21924309	.	+	.	ID=Os01t0571133-01;Name=Os01t0571133-01;Locus_id=Os01g0571133;Note=Hypothetical gene.;Transcript_evidence=AK288836 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090074B18;TENOR=Os01t0571133-01;KEGG=Os01t0571133-01
Chr01	irgsp1_rep	five_prime_UTR	21922193	21923647	.	+	.	Parent=Os01t0571133-01
Chr01	irgsp1_rep	CDS	21923648	21923905	.	+	0	Parent=Os01t0571133-01
Chr01	irgsp1_rep	three_prime_UTR	21923906	21924309	.	+	.	Parent=Os01t0571133-01
Chr01	irgsp1_rep	mRNA	21925151	21927844	.	-	.	ID=Os01t0571166-00;Name=Os01t0571166-00;Locus_id=Os01g0571166;Note=Similar to gibberellin responsive1.;Transcript_evidence=CU406837 (DDBJ%2C Best hit);ORF_evidence=NP_001105551.1 (RefSeq);TENOR=Os01t0571166-00;KEGG=Os01t0571166-00
Chr01	irgsp1_rep	five_prime_UTR	21927747	21927844	.	-	.	Parent=Os01t0571166-00
Chr01	irgsp1_rep	five_prime_UTR	21927033	21927055	.	-	.	Parent=Os01t0571166-00
Chr01	irgsp1_rep	CDS	21926882	21927032	.	-	0	Parent=Os01t0571166-00
Chr01	irgsp1_rep	CDS	21926063	21926247	.	-	2	Parent=Os01t0571166-00
Chr01	irgsp1_rep	three_prime_UTR	21925151	21926062	.	-	.	Parent=Os01t0571166-00
Chr01	irgsp1_rep	mRNA	21933324	21935901	.	+	.	ID=Os01t0571200-01;Name=Os01t0571200-01;Locus_id=Os01g0571200;Note=Similar to Ribosomal protein L34.;Transcript_evidence=AK121299 (DDBJ%2C Best hit);ORF_evidence=A2WRL8 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L34 (IPR000271),Ribosomal protein L34%2C conserved site (IPR020939);NIAS_FLcDNA=J023110L12;Expression=AK121299;TENOR=Os01t0571200-01;KEGG=Os01t0571200-01
Chr01	irgsp1_rep	five_prime_UTR	21933324	21933335	.	+	.	Parent=Os01t0571200-01
Chr01	irgsp1_rep	CDS	21933336	21933603	.	+	0	Parent=Os01t0571200-01
Chr01	irgsp1_rep	CDS	21935292	21935391	.	+	2	Parent=Os01t0571200-01
Chr01	irgsp1_rep	CDS	21935645	21935717	.	+	1	Parent=Os01t0571200-01
Chr01	irgsp1_rep	three_prime_UTR	21935718	21935901	.	+	.	Parent=Os01t0571200-01
Chr01	irgsp1_rep	mRNA	21938865	21941797	.	+	.	ID=Os01t0571300-01;Name=Os01t0571300-01;Locus_id=Os01g0571300;CGSNL Gene Symbol=HSFA7;CGSNL Gene Name=HEAT STRESS TRANSCRIPTION FACTOR A7;Oryzabase Gene Symbol Synonym(s)=OsHsfA7%2C OsHsf-01%2C HSFA6B%2C HSF01%2C OsHSF1%2C HSF1%2C OsEnS-9%2C OsHsfA7a%2C HsfA7a;Oryzabase Gene Name Synonym(s)=Heat stress transcription factor A7%2C Heat stress transcription factor A-6a%2C Heat stress transcription factor 1%2C endosperm-specific gene 9;Note=Similar to Heat shock transcription factor 31 (Fragment).;Transcript_evidence=AK064271 (DDBJ%2C Best hit);ORF_evidence=Q657C0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Heat shock factor (HSF)-type%2C DNA-binding (IPR000232),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=002-105-E08;Oryzabase=8558;Expression=AK064271;TENOR=Os01t0571300-01;KEGG=Os01t0571300-01
Chr01	irgsp1_rep	five_prime_UTR	21938865	21938865	.	+	.	Parent=Os01t0571300-01
Chr01	irgsp1_rep	CDS	21938866	21939327	.	+	0	Parent=Os01t0571300-01
Chr01	irgsp1_rep	CDS	21940734	21941480	.	+	0	Parent=Os01t0571300-01
Chr01	irgsp1_rep	three_prime_UTR	21941481	21941797	.	+	.	Parent=Os01t0571300-01
Chr01	irgsp1_rep	mRNA	21944097	21944931	.	-	.	ID=Os01t0571500-00;Name=Os01t0571500-00;Locus_id=Os01g0571500;Note=Hypothetical conserved gene.;Transcript_evidence=CT834991 (DDBJ%2C Best hit);ORF_evidence=Q657B9 (UniProt);InterPro=Lateral organ boundaries%2C LOB (IPR004883);TENOR=Os01t0571500-00;KEGG=Os01t0571500-00
Chr01	irgsp1_rep	CDS	21944356	21944931	.	-	0	Parent=Os01t0571500-00
Chr01	irgsp1_rep	three_prime_UTR	21944097	21944355	.	-	.	Parent=Os01t0571500-00
Chr01	irgsp1_rep	mRNA	21956101	21963333	.	+	.	ID=Os01t0571700-01;Name=Os01t0571700-01;Locus_id=Os01g0571700;Note=Conserved hypothetical protein.;Transcript_evidence=AK120410 (DDBJ%2C Best hit);ORF_evidence=Q7XGM6 (UniProt);NIAS_FLcDNA=J013092A17;TENOR=Os01t0571700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	21956101	21956498	.	+	.	Parent=Os01t0571700-01
Chr01	irgsp1_rep	five_prime_UTR	21956855	21957643	.	+	.	Parent=Os01t0571700-01
Chr01	irgsp1_rep	five_prime_UTR	21957807	21957886	.	+	.	Parent=Os01t0571700-01
Chr01	irgsp1_rep	five_prime_UTR	21958127	21958180	.	+	.	Parent=Os01t0571700-01
Chr01	irgsp1_rep	five_prime_UTR	21958451	21958538	.	+	.	Parent=Os01t0571700-01
Chr01	irgsp1_rep	five_prime_UTR	21958696	21958848	.	+	.	Parent=Os01t0571700-01
Chr01	irgsp1_rep	five_prime_UTR	21961891	21961955	.	+	.	Parent=Os01t0571700-01
Chr01	irgsp1_rep	five_prime_UTR	21962061	21962176	.	+	.	Parent=Os01t0571700-01
Chr01	irgsp1_rep	CDS	21962177	21962417	.	+	0	Parent=Os01t0571700-01
Chr01	irgsp1_rep	CDS	21962662	21962711	.	+	2	Parent=Os01t0571700-01
Chr01	irgsp1_rep	three_prime_UTR	21962712	21962823	.	+	.	Parent=Os01t0571700-01
Chr01	irgsp1_rep	three_prime_UTR	21962896	21963333	.	+	.	Parent=Os01t0571700-01
Chr01	irgsp1_rep	mRNA	21964687	21965030	.	+	.	ID=Os01t0571766-00;Name=Os01t0571766-00;Locus_id=Os01g0571766;Note=Conserved hypothetical protein.;Transcript_evidence=CU406244 (DDBJ%2C Best hit);ORF_evidence=Q688J8 (UniProt);TENOR=Os01t0571766-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	21964687	21964752	.	+	.	Parent=Os01t0571766-00
Chr01	irgsp1_rep	CDS	21964753	21964995	.	+	0	Parent=Os01t0571766-00
Chr01	irgsp1_rep	three_prime_UTR	21964996	21965030	.	+	.	Parent=Os01t0571766-00
Chr01	irgsp1_rep	mRNA	21965670	21966047	.	-	.	ID=Os01t0571800-00;Name=Os01t0571800-00;Locus_id=Os01g0571800;Note=Lateral organ boundaries%2C LOB domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001172428.1 (RefSeq);InterPro=Lateral organ boundaries%2C LOB (IPR004883);TENOR=Os01t0571800-00;KEGG=Os01t0571800-00
Chr01	irgsp1_rep	CDS	21965670	21966047	.	-	0	Parent=Os01t0571800-00
Chr01	irgsp1_rep	mRNA	21976583	21981580	.	+	.	ID=Os01t0572100-01;Name=Os01t0572100-01;Locus_id=Os01g0572100;CGSNL Gene Symbol=C3H7;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 7;Oryzabase Gene Symbol Synonym(s)=OsC3H7%2C DLN12%2C OsDLN12;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 7%2C DLN repressor 12%2C DLN motif protein 12;Note=Zinc finger%2C CCCH-type domain containing protein.;Transcript_evidence=AK242049 (DDBJ%2C Best hit);ORF_evidence=B9EXM7 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=J075122B22;Oryzabase=8633;TENOR=Os01t0572100-01;KEGG=Os01t0572100-01
Chr01	irgsp1_rep	CDS	21976583	21976699	.	+	0	Parent=Os01t0572100-01
Chr01	irgsp1_rep	CDS	21976812	21977381	.	+	0	Parent=Os01t0572100-01
Chr01	irgsp1_rep	three_prime_UTR	21977382	21977387	.	+	.	Parent=Os01t0572100-01
Chr01	irgsp1_rep	three_prime_UTR	21977472	21977590	.	+	.	Parent=Os01t0572100-01
Chr01	irgsp1_rep	three_prime_UTR	21977676	21977752	.	+	.	Parent=Os01t0572100-01
Chr01	irgsp1_rep	three_prime_UTR	21979631	21979855	.	+	.	Parent=Os01t0572100-01
Chr01	irgsp1_rep	three_prime_UTR	21980412	21980539	.	+	.	Parent=Os01t0572100-01
Chr01	irgsp1_rep	three_prime_UTR	21980743	21981580	.	+	.	Parent=Os01t0572100-01
Chr01	irgsp1_rep	mRNA	21992872	21994492	.	-	.	ID=Os01t0572200-01;Name=Os01t0572200-01;Locus_id=Os01g0572200;Note=Hypothetical protein.;Transcript_evidence=AK105504 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-127-D09;Expression=AK105504;TENOR=Os01t0572200-01;KEGG=Os01t0572200-01
Chr01	irgsp1_rep	five_prime_UTR	21994419	21994492	.	-	.	Parent=Os01t0572200-01
Chr01	irgsp1_rep	CDS	21993873	21994418	.	-	0	Parent=Os01t0572200-01
Chr01	irgsp1_rep	three_prime_UTR	21992872	21993872	.	-	.	Parent=Os01t0572200-01
Chr01	irgsp1_rep	mRNA	21992992	21996997	.	+	.	ID=Os01t0572300-01;Name=Os01t0572300-01;Locus_id=Os01g0572300;CGSNL Gene Symbol=IDD11;CGSNL Gene Name=INDETERMINATE DOMAIN 11;Oryzabase Gene Symbol Synonym(s)=OsIDD11;Oryzabase Gene Name Synonym(s)=indeterminate domain 11;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK289209 (DDBJ%2C Best hit);ORF_evidence=E5GCB4 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J100058I16;Oryzabase=13158;TENOR=Os01t0572300-01;KEGG=Os01t0572300-01
Chr01	irgsp1_rep	five_prime_UTR	21992992	21993566	.	+	.	Parent=Os01t0572300-01
Chr01	irgsp1_rep	CDS	21993567	21993789	.	+	0	Parent=Os01t0572300-01
Chr01	irgsp1_rep	CDS	21993883	21994282	.	+	2	Parent=Os01t0572300-01
Chr01	irgsp1_rep	CDS	21995581	21996571	.	+	1	Parent=Os01t0572300-01
Chr01	irgsp1_rep	three_prime_UTR	21996572	21996997	.	+	.	Parent=Os01t0572300-01
Chr01	irgsp1_rep	mRNA	22021849	22027269	.	-	.	ID=Os01t0572700-01;Name=Os01t0572700-01;Locus_id=Os01g0572700;Note=Conserved hypothetical protein.;Transcript_evidence=AK105334 (DDBJ%2C Best hit);ORF_evidence=A2ZUL3 (UniProt);NIAS_FLcDNA=001-118-D10;TENOR=Os01t0572700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	22027195	22027269	.	-	.	Parent=Os01t0572700-01
Chr01	irgsp1_rep	CDS	22026770	22027194	.	-	0	Parent=Os01t0572700-01
Chr01	irgsp1_rep	CDS	22026552	22026687	.	-	1	Parent=Os01t0572700-01
Chr01	irgsp1_rep	CDS	22026331	22026430	.	-	0	Parent=Os01t0572700-01
Chr01	irgsp1_rep	CDS	22026165	22026229	.	-	2	Parent=Os01t0572700-01
Chr01	irgsp1_rep	three_prime_UTR	22026164	22026164	.	-	.	Parent=Os01t0572700-01
Chr01	irgsp1_rep	three_prime_UTR	22023634	22023798	.	-	.	Parent=Os01t0572700-01
Chr01	irgsp1_rep	three_prime_UTR	22023438	22023534	.	-	.	Parent=Os01t0572700-01
Chr01	irgsp1_rep	three_prime_UTR	22022458	22022588	.	-	.	Parent=Os01t0572700-01
Chr01	irgsp1_rep	three_prime_UTR	22021849	22022379	.	-	.	Parent=Os01t0572700-01
Chr01	irgsp1_rep	mRNA	22039447	22042720	.	-	.	ID=Os01t0572966-00;Name=Os01t0572966-00;Locus_id=Os01g0572966;Note=Conserved hypothetical protein.;Transcript_evidence=FP097187 (DDBJ);ORF_evidence=NP_001044381.1 (RefSeq);TENOR=Os01t0572966-00
Chr01	irgsp1_rep	five_prime_UTR	22042688	22042720	.	-	.	Parent=Os01t0572966-00
Chr01	irgsp1_rep	CDS	22042362	22042687	.	-	0	Parent=Os01t0572966-00
Chr01	irgsp1_rep	CDS	22039447	22039948	.	-	1	Parent=Os01t0572966-00
Chr01	irgsp1_rep	mRNA	22074387	22079795	.	+	.	ID=Os01t0574400-01;Name=Os01t0574400-01;Locus_id=Os01g0574400;CGSNL Gene Symbol=FTSH4;Oryzabase Gene Symbol Synonym(s)=OsFtsH4%2C FtsH4;Note=Similar to Cell division protein ftsH (EC 3.4.24.-).;Transcript_evidence=AK072509 (DDBJ%2C Best hit);ORF_evidence=Q8LQJ9 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: protein catabolic process (GO:0030163),Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=Peptidase M41 (IPR000642),ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960),Peptidase M41%2C FtsH (IPR005936);NIAS_FLcDNA=J023128D21;Oryzabase=21257;Expression=AK072509;TENOR=Os01t0574400-01;KEGG=Os01t0574400-01
Chr01	irgsp1_rep	five_prime_UTR	22074387	22074525	.	+	.	Parent=Os01t0574400-01
Chr01	irgsp1_rep	CDS	22074526	22074552	.	+	0	Parent=Os01t0574400-01
Chr01	irgsp1_rep	CDS	22075380	22075467	.	+	0	Parent=Os01t0574400-01
Chr01	irgsp1_rep	CDS	22075798	22076058	.	+	2	Parent=Os01t0574400-01
Chr01	irgsp1_rep	CDS	22076815	22077051	.	+	2	Parent=Os01t0574400-01
Chr01	irgsp1_rep	CDS	22077141	22077265	.	+	2	Parent=Os01t0574400-01
Chr01	irgsp1_rep	CDS	22077983	22078459	.	+	0	Parent=Os01t0574400-01
Chr01	irgsp1_rep	CDS	22078545	22079459	.	+	0	Parent=Os01t0574400-01
Chr01	irgsp1_rep	three_prime_UTR	22079460	22079795	.	+	.	Parent=Os01t0574400-01
Chr01	irgsp1_rep	mRNA	22079065	22079852	.	+	.	ID=Os01t0574400-02;Name=Os01t0574400-02;Locus_id=Os01g0574400;CGSNL Gene Symbol=FTSH4;Oryzabase Gene Symbol Synonym(s)=OsFtsH4%2C FtsH4;Note=Similar to Cell division protease ftsH homolog 4%2C mitochondrial.;Transcript_evidence=AK103979 (DDBJ%2C Best hit);ORF_evidence=Q8LQJ9 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: ATP binding (GO:0005524);InterPro=Peptidase M41 (IPR000642);NIAS_FLcDNA=001-017-B05;Oryzabase=21257;Expression=AK103979;TENOR=Os01t0574400-02;KEGG=Os01t0574400-02 (EC:3.4.24.-)
Chr01	irgsp1_rep	five_prime_UTR	22079065	22079066	.	+	.	Parent=Os01t0574400-02
Chr01	irgsp1_rep	CDS	22079067	22079459	.	+	0	Parent=Os01t0574400-02
Chr01	irgsp1_rep	three_prime_UTR	22079460	22079852	.	+	.	Parent=Os01t0574400-02
Chr01	irgsp1_rep	mRNA	22077185	22079275	.	-	.	ID=Os01t0574451-00;Name=Os01t0574451-00;Locus_id=Os01g0574451;Note=Hypothetical protein.;Transcript_evidence=tplb0049c07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0574451-00
Chr01	irgsp1_rep	five_prime_UTR	22079060	22079275	.	-	.	Parent=Os01t0574451-00
Chr01	irgsp1_rep	CDS	22078549	22079059	.	-	0	Parent=Os01t0574451-00
Chr01	irgsp1_rep	CDS	22078348	22078460	.	-	2	Parent=Os01t0574451-00
Chr01	irgsp1_rep	three_prime_UTR	22077981	22078347	.	-	.	Parent=Os01t0574451-00
Chr01	irgsp1_rep	three_prime_UTR	22077185	22077263	.	-	.	Parent=Os01t0574451-00
Chr01	irgsp1_rep	mRNA	22082298	22088239	.	+	.	ID=Os01t0574500-01;Name=Os01t0574500-01;Locus_id=Os01g0574500;CGSNL Gene Symbol=FTSH5;Oryzabase Gene Symbol Synonym(s)=OsFtsH5%2C FtsH5;Note=ATPase%2C AAA-type%2C core domain containing protein.;Transcript_evidence=AK120948 (DDBJ%2C Best hit);ORF_evidence=Q8LQJ8 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: protein catabolic process (GO:0030163),Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=Peptidase M41 (IPR000642),ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960),Peptidase M41%2C FtsH (IPR005936);NIAS_FLcDNA=J023038C10;Oryzabase=21258;Expression=AK120948;TENOR=Os01t0574500-01;KEGG=Os01t0574500-01
Chr01	irgsp1_rep	five_prime_UTR	22082298	22082540	.	+	.	Parent=Os01t0574500-01
Chr01	irgsp1_rep	CDS	22082541	22082567	.	+	0	Parent=Os01t0574500-01
Chr01	irgsp1_rep	CDS	22083159	22083246	.	+	0	Parent=Os01t0574500-01
Chr01	irgsp1_rep	CDS	22083559	22083819	.	+	2	Parent=Os01t0574500-01
Chr01	irgsp1_rep	CDS	22084583	22084840	.	+	2	Parent=Os01t0574500-01
Chr01	irgsp1_rep	CDS	22084926	22085050	.	+	2	Parent=Os01t0574500-01
Chr01	irgsp1_rep	CDS	22086265	22086741	.	+	0	Parent=Os01t0574500-01
Chr01	irgsp1_rep	CDS	22086827	22087738	.	+	0	Parent=Os01t0574500-01
Chr01	irgsp1_rep	three_prime_UTR	22087739	22088239	.	+	.	Parent=Os01t0574500-01
Chr01	irgsp1_rep	mRNA	22086829	22088142	.	+	.	ID=Os01t0574500-02;Name=Os01t0574500-02;Locus_id=Os01g0574500;CGSNL Gene Symbol=FTSH5;Oryzabase Gene Symbol Synonym(s)=OsFtsH5%2C FtsH5;Note=Similar to Cell division protease ftsH homolog 5%2C mitochondrial.;Transcript_evidence=AK062071 (DDBJ%2C Best hit);ORF_evidence=Q8LQJ8 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: ATP binding (GO:0005524);InterPro=Peptidase M41 (IPR000642);NIAS_FLcDNA=001-044-E05;Oryzabase=21258;Expression=AK062071;TENOR=Os01t0574500-02;KEGG=Os01t0574500-02 (EC:3.4.24.-)
Chr01	irgsp1_rep	five_prime_UTR	22086829	22086829	.	+	.	Parent=Os01t0574500-02
Chr01	irgsp1_rep	CDS	22086830	22087738	.	+	0	Parent=Os01t0574500-02
Chr01	irgsp1_rep	three_prime_UTR	22087739	22088142	.	+	.	Parent=Os01t0574500-02
Chr01	irgsp1_rep	mRNA	22083631	22087557	.	-	.	ID=Os01t0574550-00;Name=Os01t0574550-00;Locus_id=Os01g0574550;Note=Hypothetical protein.;Transcript_evidence=tplb0049c07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0574550-00
Chr01	irgsp1_rep	five_prime_UTR	22087084	22087557	.	-	.	Parent=Os01t0574550-00
Chr01	irgsp1_rep	CDS	22086831	22087083	.	-	0	Parent=Os01t0574550-00
Chr01	irgsp1_rep	CDS	22086531	22086742	.	-	2	Parent=Os01t0574550-00
Chr01	irgsp1_rep	three_prime_UTR	22086273	22086530	.	-	.	Parent=Os01t0574550-00
Chr01	irgsp1_rep	three_prime_UTR	22084677	22085057	.	-	.	Parent=Os01t0574550-00
Chr01	irgsp1_rep	three_prime_UTR	22083631	22083800	.	-	.	Parent=Os01t0574550-00
Chr01	irgsp1_rep	mRNA	22088204	22091018	.	-	.	ID=Os01t0574600-01;Name=Os01t0574600-01;Locus_id=Os01g0574600;RAP-DB Gene Symbol Synonym(s)=OsGR2%2C GLYR2;RAP-DB Gene Name Synonym(s)=glyoxylate reductase 2%2C glyoxylate/succinic semialdehyde reductases 2;CGSNL Gene Symbol=GLYR2;CGSNL Gene Name=GLYOXYLATE/SUCCINIC SEMIALDEHYDE REDUCTASE 2;Oryzabase Gene Symbol Synonym(s)=OsGLYR2;Oryzabase Gene Name Synonym(s)=glyoxylate/succinic semialdehyde reductase 2;Note=Glyoxylate reductase;Transcript_evidence=AK064876;ORF_evidence=Q656T5;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: NADP binding (GO:0050661),Molecular Function: NAD binding (GO:0051287);InterPro=NAD(P)-binding domain superfamily (IPR036291),6-phosphogluconate dehydrogenase-like%2C C-terminal domain superfamily (IPR008927),6-phosphogluconate dehydrogenase%2C domain 2 (IPR013328),3-hydroxyisobutyrate dehydrogenase-related (IPR015815),6-phosphogluconate dehydrogenase%2C NADP-binding (IPR006115),3-hydroxyisobutyrate dehydrogenase%2C NAD-binding domain (IPR029154),3-hydroxyisobutyrate dehydrogenase-related%2C conserved site (IPR002204);NIAS_FLcDNA=J013000J16;Manual Curation=July 31%2C 2020;Literature_PMID=32727356,28855911;Oryzabase=21809;Expression=AK064876;TENOR=Os01t0574600-01;KEGG=Os01t0574600-01 (EC:1.1.1.79);Subcellular location=chloroplast (GO:0009507)
Chr01	irgsp1_rep	five_prime_UTR	22090951	22091018	.	-	.	Parent=Os01t0574600-01
Chr01	irgsp1_rep	CDS	22090733	22090950	.	-	0	Parent=Os01t0574600-01
Chr01	irgsp1_rep	CDS	22090436	22090501	.	-	1	Parent=Os01t0574600-01
Chr01	irgsp1_rep	CDS	22089868	22089943	.	-	1	Parent=Os01t0574600-01
Chr01	irgsp1_rep	CDS	22089702	22089757	.	-	0	Parent=Os01t0574600-01
Chr01	irgsp1_rep	CDS	22089521	22089605	.	-	1	Parent=Os01t0574600-01
Chr01	irgsp1_rep	CDS	22089319	22089379	.	-	0	Parent=Os01t0574600-01
Chr01	irgsp1_rep	CDS	22089160	22089212	.	-	2	Parent=Os01t0574600-01
Chr01	irgsp1_rep	CDS	22088999	22089069	.	-	0	Parent=Os01t0574600-01
Chr01	irgsp1_rep	CDS	22088821	22088893	.	-	1	Parent=Os01t0574600-01
Chr01	irgsp1_rep	CDS	22088630	22088734	.	-	0	Parent=Os01t0574600-01
Chr01	irgsp1_rep	CDS	22088364	22088525	.	-	0	Parent=Os01t0574600-01
Chr01	irgsp1_rep	three_prime_UTR	22088204	22088363	.	-	.	Parent=Os01t0574600-01
Chr01	irgsp1_rep	mRNA	22098634	22099659	.	-	.	ID=Os01t0574800-01;Name=Os01t0574800-01;Locus_id=Os01g0574800;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK067593 (DDBJ%2C Best hit);ORF_evidence=NP_001152741.1 (RefSeq);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=J013108J24;Expression=AK067593;TENOR=Os01t0574800-01;KEGG=Os01t0574800-01
Chr01	irgsp1_rep	five_prime_UTR	22099550	22099659	.	-	.	Parent=Os01t0574800-01
Chr01	irgsp1_rep	CDS	22098674	22099549	.	-	0	Parent=Os01t0574800-01
Chr01	irgsp1_rep	three_prime_UTR	22098634	22098673	.	-	.	Parent=Os01t0574800-01
Chr01	irgsp1_rep	mRNA	22120320	22128679	.	+	.	ID=Os01t0575000-01;Name=Os01t0575000-01;Locus_id=Os01g0575000;Note=Root hair defective 3 GTP-binding family protein.;Transcript_evidence=AK070726 (DDBJ%2C Best hit);ORF_evidence=Q0JLS6 (UniProt);GO=Molecular Function: hydrolase activity%2C acting on acid anhydrides (GO:0016817);InterPro=Root hair defective 3 GTP-binding (IPR008803);NIAS_FLcDNA=J023059E17;Expression=AK070726;TENOR=Os01t0575000-01;KEGG=Os01t0575000-01
Chr01	irgsp1_rep	five_prime_UTR	22120320	22120481	.	+	.	Parent=Os01t0575000-01
Chr01	irgsp1_rep	five_prime_UTR	22121500	22121501	.	+	.	Parent=Os01t0575000-01
Chr01	irgsp1_rep	CDS	22121502	22121646	.	+	0	Parent=Os01t0575000-01
Chr01	irgsp1_rep	CDS	22121756	22121820	.	+	2	Parent=Os01t0575000-01
Chr01	irgsp1_rep	CDS	22121942	22122046	.	+	0	Parent=Os01t0575000-01
Chr01	irgsp1_rep	CDS	22123044	22123114	.	+	0	Parent=Os01t0575000-01
Chr01	irgsp1_rep	CDS	22123204	22123267	.	+	1	Parent=Os01t0575000-01
Chr01	irgsp1_rep	CDS	22123371	22123436	.	+	0	Parent=Os01t0575000-01
Chr01	irgsp1_rep	CDS	22123563	22123610	.	+	0	Parent=Os01t0575000-01
Chr01	irgsp1_rep	CDS	22123695	22123757	.	+	0	Parent=Os01t0575000-01
Chr01	irgsp1_rep	CDS	22123835	22123891	.	+	0	Parent=Os01t0575000-01
Chr01	irgsp1_rep	CDS	22123980	22124138	.	+	0	Parent=Os01t0575000-01
Chr01	irgsp1_rep	CDS	22124214	22124282	.	+	0	Parent=Os01t0575000-01
Chr01	irgsp1_rep	CDS	22124367	22124458	.	+	0	Parent=Os01t0575000-01
Chr01	irgsp1_rep	CDS	22125019	22125097	.	+	1	Parent=Os01t0575000-01
Chr01	irgsp1_rep	CDS	22125646	22125808	.	+	0	Parent=Os01t0575000-01
Chr01	irgsp1_rep	CDS	22126414	22126538	.	+	2	Parent=Os01t0575000-01
Chr01	irgsp1_rep	CDS	22126623	22126885	.	+	0	Parent=Os01t0575000-01
Chr01	irgsp1_rep	CDS	22126957	22127053	.	+	1	Parent=Os01t0575000-01
Chr01	irgsp1_rep	CDS	22127144	22127305	.	+	0	Parent=Os01t0575000-01
Chr01	irgsp1_rep	CDS	22127441	22127545	.	+	0	Parent=Os01t0575000-01
Chr01	irgsp1_rep	CDS	22127672	22127766	.	+	0	Parent=Os01t0575000-01
Chr01	irgsp1_rep	CDS	22127853	22127949	.	+	1	Parent=Os01t0575000-01
Chr01	irgsp1_rep	CDS	22128044	22128274	.	+	0	Parent=Os01t0575000-01
Chr01	irgsp1_rep	three_prime_UTR	22128275	22128679	.	+	.	Parent=Os01t0575000-01
Chr01	irgsp1_rep	mRNA	22120361	22128715	.	+	.	ID=Os01t0575000-02;Name=Os01t0575000-02;Locus_id=Os01g0575000;Note=Root hair defective 3 GTP-binding family protein.;Transcript_evidence=AK101859 (DDBJ%2C Best hit);ORF_evidence=Q0JLS6 (UniProt);GO=Molecular Function: hydrolase activity%2C acting on acid anhydrides (GO:0016817);InterPro=Root hair defective 3 GTP-binding (IPR008803);NIAS_FLcDNA=J033069P18;Expression=AK101859;TENOR=Os01t0575000-02;KEGG=Os01t0575000-02
Chr01	irgsp1_rep	five_prime_UTR	22120361	22120481	.	+	.	Parent=Os01t0575000-02
Chr01	irgsp1_rep	five_prime_UTR	22121500	22121501	.	+	.	Parent=Os01t0575000-02
Chr01	irgsp1_rep	CDS	22121502	22121646	.	+	0	Parent=Os01t0575000-02
Chr01	irgsp1_rep	CDS	22121756	22121820	.	+	2	Parent=Os01t0575000-02
Chr01	irgsp1_rep	CDS	22121942	22122046	.	+	0	Parent=Os01t0575000-02
Chr01	irgsp1_rep	CDS	22123044	22123114	.	+	0	Parent=Os01t0575000-02
Chr01	irgsp1_rep	CDS	22123204	22123267	.	+	1	Parent=Os01t0575000-02
Chr01	irgsp1_rep	CDS	22123371	22123436	.	+	0	Parent=Os01t0575000-02
Chr01	irgsp1_rep	CDS	22123563	22123610	.	+	0	Parent=Os01t0575000-02
Chr01	irgsp1_rep	CDS	22123695	22123757	.	+	0	Parent=Os01t0575000-02
Chr01	irgsp1_rep	CDS	22123835	22123891	.	+	0	Parent=Os01t0575000-02
Chr01	irgsp1_rep	CDS	22123980	22124138	.	+	0	Parent=Os01t0575000-02
Chr01	irgsp1_rep	CDS	22124214	22124282	.	+	0	Parent=Os01t0575000-02
Chr01	irgsp1_rep	CDS	22124367	22124458	.	+	0	Parent=Os01t0575000-02
Chr01	irgsp1_rep	CDS	22125019	22125097	.	+	1	Parent=Os01t0575000-02
Chr01	irgsp1_rep	CDS	22125646	22125808	.	+	0	Parent=Os01t0575000-02
Chr01	irgsp1_rep	CDS	22126414	22126538	.	+	2	Parent=Os01t0575000-02
Chr01	irgsp1_rep	CDS	22126623	22126885	.	+	0	Parent=Os01t0575000-02
Chr01	irgsp1_rep	CDS	22126957	22127053	.	+	1	Parent=Os01t0575000-02
Chr01	irgsp1_rep	CDS	22127144	22127305	.	+	0	Parent=Os01t0575000-02
Chr01	irgsp1_rep	CDS	22127441	22127545	.	+	0	Parent=Os01t0575000-02
Chr01	irgsp1_rep	CDS	22127672	22127766	.	+	0	Parent=Os01t0575000-02
Chr01	irgsp1_rep	CDS	22127853	22127949	.	+	1	Parent=Os01t0575000-02
Chr01	irgsp1_rep	CDS	22128044	22128274	.	+	0	Parent=Os01t0575000-02
Chr01	irgsp1_rep	three_prime_UTR	22128275	22128715	.	+	.	Parent=Os01t0575000-02
Chr01	irgsp1_rep	mRNA	22123702	22128637	.	+	.	ID=Os01t0575000-03;Name=Os01t0575000-03;Locus_id=Os01g0575000;Note=Similar to Root hair defective 3 GTP-binding protein.;Transcript_evidence=AK101558 (DDBJ%2C Best hit);ORF_evidence=Q0JLS6 (UniProt);GO=Molecular Function: hydrolase activity%2C acting on acid anhydrides (GO:0016817);InterPro=Root hair defective 3 GTP-binding (IPR008803);NIAS_FLcDNA=J033050C19;Expression=AK101558;TENOR=Os01t0575000-03;KEGG=Os01t0575000-03
Chr01	irgsp1_rep	five_prime_UTR	22123702	22123703	.	+	.	Parent=Os01t0575000-03
Chr01	irgsp1_rep	CDS	22123704	22123757	.	+	0	Parent=Os01t0575000-03
Chr01	irgsp1_rep	CDS	22123835	22123891	.	+	0	Parent=Os01t0575000-03
Chr01	irgsp1_rep	CDS	22123980	22124138	.	+	0	Parent=Os01t0575000-03
Chr01	irgsp1_rep	CDS	22124214	22124282	.	+	0	Parent=Os01t0575000-03
Chr01	irgsp1_rep	CDS	22124367	22124458	.	+	0	Parent=Os01t0575000-03
Chr01	irgsp1_rep	CDS	22125019	22125097	.	+	1	Parent=Os01t0575000-03
Chr01	irgsp1_rep	CDS	22125646	22125808	.	+	0	Parent=Os01t0575000-03
Chr01	irgsp1_rep	CDS	22126414	22126538	.	+	2	Parent=Os01t0575000-03
Chr01	irgsp1_rep	CDS	22126623	22126885	.	+	0	Parent=Os01t0575000-03
Chr01	irgsp1_rep	CDS	22126957	22127053	.	+	1	Parent=Os01t0575000-03
Chr01	irgsp1_rep	CDS	22127144	22127305	.	+	0	Parent=Os01t0575000-03
Chr01	irgsp1_rep	CDS	22127441	22127545	.	+	0	Parent=Os01t0575000-03
Chr01	irgsp1_rep	CDS	22127672	22127766	.	+	0	Parent=Os01t0575000-03
Chr01	irgsp1_rep	CDS	22127853	22127949	.	+	1	Parent=Os01t0575000-03
Chr01	irgsp1_rep	CDS	22128044	22128274	.	+	0	Parent=Os01t0575000-03
Chr01	irgsp1_rep	three_prime_UTR	22128275	22128637	.	+	.	Parent=Os01t0575000-03
Chr01	irgsp1_rep	mRNA	22138044	22142395	.	+	.	ID=Os01t0575200-01;Name=Os01t0575200-01;Locus_id=Os01g0575200;Oryzabase Gene Symbol Synonym(s)=OsbHLH024;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 024;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=AK106333 (DDBJ%2C Best hit);ORF_evidence=B8AAS9 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=002-101-F10;Oryzabase=15315;TENOR=Os01t0575200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	22138044	22138164	.	+	.	Parent=Os01t0575200-01
Chr01	irgsp1_rep	CDS	22138165	22138277	.	+	0	Parent=Os01t0575200-01
Chr01	irgsp1_rep	CDS	22138371	22139139	.	+	1	Parent=Os01t0575200-01
Chr01	irgsp1_rep	CDS	22141265	22141645	.	+	0	Parent=Os01t0575200-01
Chr01	irgsp1_rep	CDS	22141790	22141891	.	+	0	Parent=Os01t0575200-01
Chr01	irgsp1_rep	three_prime_UTR	22141892	22142395	.	+	.	Parent=Os01t0575200-01
Chr01	irgsp1_rep	mRNA	22146536	22147630	.	+	.	ID=Os01t0575400-00;Name=Os01t0575400-00;Locus_id=Os01g0575400;Note=Similar to protein kinase family protein.;Transcript_evidence=FJ901225 (DDBJ);ORF_evidence=NP_174637.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os01t0575400-00
Chr01	irgsp1_rep	CDS	22146536	22147630	.	+	0	Parent=Os01t0575400-00
Chr01	irgsp1_rep	mRNA	22163109	22180388	.	-	.	ID=Os01t0575500-01;Name=Os01t0575500-01;Locus_id=Os01g0575500;Oryzabase Gene Symbol Synonym(s)=OsWD40-16;Note=Similar to predicted protein.;Transcript_evidence=AK242763 (DDBJ%2C Best hit);ORF_evidence=XP_002894154.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=DENN (IPR001194),WD40 repeat (IPR001680),dDENN (IPR005112),uDENN (IPR005113),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J090052K16;Oryzabase=10697;TENOR=Os01t0575500-01;KEGG=Os01t0575500-01
Chr01	irgsp1_rep	five_prime_UTR	22180239	22180388	.	-	.	Parent=Os01t0575500-01
Chr01	irgsp1_rep	CDS	22180062	22180238	.	-	0	Parent=Os01t0575500-01
Chr01	irgsp1_rep	CDS	22178773	22178866	.	-	0	Parent=Os01t0575500-01
Chr01	irgsp1_rep	CDS	22178418	22178619	.	-	2	Parent=Os01t0575500-01
Chr01	irgsp1_rep	CDS	22178196	22178337	.	-	1	Parent=Os01t0575500-01
Chr01	irgsp1_rep	CDS	22177971	22178071	.	-	0	Parent=Os01t0575500-01
Chr01	irgsp1_rep	CDS	22177808	22177871	.	-	1	Parent=Os01t0575500-01
Chr01	irgsp1_rep	CDS	22177498	22177611	.	-	0	Parent=Os01t0575500-01
Chr01	irgsp1_rep	CDS	22176645	22176865	.	-	0	Parent=Os01t0575500-01
Chr01	irgsp1_rep	CDS	22175875	22175929	.	-	1	Parent=Os01t0575500-01
Chr01	irgsp1_rep	CDS	22175441	22175530	.	-	0	Parent=Os01t0575500-01
Chr01	irgsp1_rep	CDS	22174470	22174665	.	-	0	Parent=Os01t0575500-01
Chr01	irgsp1_rep	CDS	22173868	22173985	.	-	2	Parent=Os01t0575500-01
Chr01	irgsp1_rep	CDS	22173723	22173789	.	-	1	Parent=Os01t0575500-01
Chr01	irgsp1_rep	CDS	22173575	22173619	.	-	0	Parent=Os01t0575500-01
Chr01	irgsp1_rep	CDS	22172650	22172725	.	-	0	Parent=Os01t0575500-01
Chr01	irgsp1_rep	CDS	22172475	22172548	.	-	2	Parent=Os01t0575500-01
Chr01	irgsp1_rep	CDS	22172341	22172391	.	-	0	Parent=Os01t0575500-01
Chr01	irgsp1_rep	CDS	22171814	22171971	.	-	0	Parent=Os01t0575500-01
Chr01	irgsp1_rep	CDS	22170614	22170661	.	-	1	Parent=Os01t0575500-01
Chr01	irgsp1_rep	CDS	22170219	22170276	.	-	1	Parent=Os01t0575500-01
Chr01	irgsp1_rep	CDS	22170046	22170129	.	-	0	Parent=Os01t0575500-01
Chr01	irgsp1_rep	CDS	22169728	22169959	.	-	0	Parent=Os01t0575500-01
Chr01	irgsp1_rep	CDS	22169416	22169615	.	-	2	Parent=Os01t0575500-01
Chr01	irgsp1_rep	CDS	22167324	22167388	.	-	0	Parent=Os01t0575500-01
Chr01	irgsp1_rep	CDS	22166470	22166593	.	-	1	Parent=Os01t0575500-01
Chr01	irgsp1_rep	CDS	22165892	22166073	.	-	0	Parent=Os01t0575500-01
Chr01	irgsp1_rep	CDS	22165337	22165408	.	-	1	Parent=Os01t0575500-01
Chr01	irgsp1_rep	CDS	22165086	22165246	.	-	1	Parent=Os01t0575500-01
Chr01	irgsp1_rep	CDS	22164918	22164956	.	-	2	Parent=Os01t0575500-01
Chr01	irgsp1_rep	CDS	22164027	22164235	.	-	2	Parent=Os01t0575500-01
Chr01	irgsp1_rep	CDS	22163315	22163410	.	-	0	Parent=Os01t0575500-01
Chr01	irgsp1_rep	three_prime_UTR	22163109	22163314	.	-	.	Parent=Os01t0575500-01
Chr01	irgsp1_rep	mRNA	22183942	22184097	.	+	.	ID=Os01t0575701-00;Name=Os01t0575701-00;Locus_id=Os01g0575701;Note=Similar to anthocyanin regulatory Lc protein.;Transcript_evidence=U58194 (DDBJ);ORF_evidence=NP_001106073.1 (RefSeq);TENOR=Os01t0575701-00;KEGG=Os01t0575701-00
Chr01	irgsp1_rep	CDS	22183942	22184097	.	+	0	Parent=Os01t0575701-00
Chr01	irgsp1_rep	mRNA	22185305	22186028	.	-	.	ID=Os01t0575801-00;Name=Os01t0575801-00;Locus_id=Os01g0575801;Note=Hypothetical conserved gene.;Transcript_evidence=AK100725 (DDBJ%2C Secondary hit);ORF_evidence=B8AWA5 (UniProt);Expression=AK100725;TENOR=Os01t0575801-00;KEGG=Os01t0575801-00
Chr01	irgsp1_rep	five_prime_UTR	22185944	22186028	.	-	.	Parent=Os01t0575801-00
Chr01	irgsp1_rep	CDS	22185791	22185943	.	-	0	Parent=Os01t0575801-00
Chr01	irgsp1_rep	CDS	22185482	22185574	.	-	0	Parent=Os01t0575801-00
Chr01	irgsp1_rep	three_prime_UTR	22185305	22185481	.	-	.	Parent=Os01t0575801-00
Chr01	irgsp1_rep	mRNA	22189635	22195896	.	-	.	ID=Os01t0575901-01;Name=Os01t0575901-01;Locus_id=Os01g0575901;Note=Hypothetical conserved gene.;Transcript_evidence=AK288369 (DDBJ%2C Best hit);ORF_evidence=B9EXN9 (UniProt);NIAS_FLcDNA=J090025P19;TENOR=Os01t0575901-01;KEGG=Os01t0575901-01
Chr01	irgsp1_rep	five_prime_UTR	22195244	22195896	.	-	.	Parent=Os01t0575901-01
Chr01	irgsp1_rep	CDS	22194623	22195243	.	-	0	Parent=Os01t0575901-01
Chr01	irgsp1_rep	three_prime_UTR	22189635	22194622	.	-	.	Parent=Os01t0575901-01
Chr01	irgsp1_rep	mRNA	22221812	22222613	.	+	.	ID=Os01t0576000-01;Name=Os01t0576000-01;Locus_id=Os01g0576000;Note=Hypothetical conserved gene.;Transcript_evidence=AK109219 (DDBJ%2C Best hit);ORF_evidence=B9EXP0 (UniProt);NIAS_FLcDNA=002-156-E03;Expression=AK109219;TENOR=Os01t0576000-01;KEGG=Os01t0576000-01
Chr01	irgsp1_rep	five_prime_UTR	22221812	22222191	.	+	.	Parent=Os01t0576000-01
Chr01	irgsp1_rep	CDS	22222192	22222275	.	+	0	Parent=Os01t0576000-01
Chr01	irgsp1_rep	CDS	22222363	22222485	.	+	0	Parent=Os01t0576000-01
Chr01	irgsp1_rep	three_prime_UTR	22222486	22222613	.	+	.	Parent=Os01t0576000-01
Chr01	irgsp1_rep	mRNA	22233975	22234779	.	-	.	ID=Os01t0576050-00;Name=Os01t0576050-00;Locus_id=Os01g0576050;Note=Hypothetical conserved gene.;Transcript_evidence=AK109219 (DDBJ%2C Secondary hit);ORF_evidence=B9EXP0 (UniProt);Expression=AK109219;TENOR=Os01t0576050-00;KEGG=Os01t0576050-00
Chr01	irgsp1_rep	five_prime_UTR	22234397	22234779	.	-	.	Parent=Os01t0576050-00
Chr01	irgsp1_rep	CDS	22234313	22234396	.	-	0	Parent=Os01t0576050-00
Chr01	irgsp1_rep	CDS	22234103	22234225	.	-	0	Parent=Os01t0576050-00
Chr01	irgsp1_rep	three_prime_UTR	22233975	22234102	.	-	.	Parent=Os01t0576050-00
Chr01	irgsp1_rep	mRNA	22215593	22241305	.	+	.	ID=Os01t0576100-01;Name=Os01t0576100-01;Locus_id=Os01g0576100;RAP-DB Gene Symbol Synonym(s)=Rb1;RAP-DB Gene Name Synonym(s)=Rb2-like;Oryzabase Gene Symbol Synonym(s)=OsbHLH012%2C bHLH012%2C bHLH12%2C OsRb%2C Rb%2C Rb1%2C OsRb1;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 012;Note=bHLH protein%2C Regulation of anthocyanin synthesis in the leaf sheath%2C (Nipponbare: nonfunctional);Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Helix-loop-helix DNA-binding domain superfamily (IPR036638),Transcription factor MYC/MYB N-terminal (IPR025610),Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);Manual Curation=May 28%2C 2020;Literature_PMID=32458058;Oryzabase=15305;TENOR=Os01t0576100-00
Chr01	irgsp1_rep	CDS	22215593	22215732	.	+	0	Parent=Os01t0576100-01
Chr01	irgsp1_rep	CDS	22217582	22217845	.	+	1	Parent=Os01t0576100-01
Chr01	irgsp1_rep	CDS	22218668	22218763	.	+	1	Parent=Os01t0576100-01
Chr01	irgsp1_rep	CDS	22219063	22219078	.	+	1	Parent=Os01t0576100-01
Chr01	irgsp1_rep	CDS	22219206	22219262	.	+	0	Parent=Os01t0576100-01
Chr01	irgsp1_rep	CDS	22236950	22237540	.	+	0	Parent=Os01t0576100-01
Chr01	irgsp1_rep	CDS	22237669	22238049	.	+	0	Parent=Os01t0576100-01
Chr01	irgsp1_rep	CDS	22241234	22241305	.	+	0	Parent=Os01t0576100-01
Chr01	irgsp1_rep	mRNA	22301233	22327456	.	+	.	ID=Os01t0577300-01;Name=Os01t0577300-01;Locus_id=Os01g0577300;RAP-DB Gene Symbol Synonym(s)=PSH1%2C Rb2;RAP-DB Gene Name Synonym(s)=purple leaf sheath 1;CGSNL Gene Symbol=PSH1;CGSNL Gene Name=PURPLE LEAF SHEATH 1;Oryzabase Gene Symbol Synonym(s)=Rb%2C Rb*%2C bhlh165%2C OsbHLH165%2C Rb2%2C OsPSH1%2C OsRb2;Oryzabase Gene Name Synonym(s)=Rice R gene : b R gene family%2C Rice R gene-b%2C basic/helix-loop-helix 165%2C basic helix loop helix 165%2C purple leaf sheath 1;Note=bHLH protein%2C Regulation of anthocyanin synthesis in the leaf sheath%2C (Nipponbare: nonfunctional);Transcript_evidence=XM_026022560;ORF_evidence=XP_025878345;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Helix-loop-helix DNA-binding domain superfamily (IPR036638),Transcription factor MYC/MYB N-terminal (IPR025610),Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);Manual Curation=May 28%2C 2020;Literature_PMID=32458058;Oryzabase=2064;TENOR=Os01t0577300-00
Chr01	irgsp1_rep	CDS	22301233	22301372	.	+	0	Parent=Os01t0577300-01
Chr01	irgsp1_rep	CDS	22303735	22303998	.	+	1	Parent=Os01t0577300-01
Chr01	irgsp1_rep	CDS	22306310	22306406	.	+	1	Parent=Os01t0577300-01
Chr01	irgsp1_rep	CDS	22306523	22306537	.	+	0	Parent=Os01t0577300-01
Chr01	irgsp1_rep	CDS	22306665	22306721	.	+	0	Parent=Os01t0577300-01
Chr01	irgsp1_rep	CDS	22324953	22325549	.	+	0	Parent=Os01t0577300-01
Chr01	irgsp1_rep	CDS	22325685	22326077	.	+	0	Parent=Os01t0577300-01
Chr01	irgsp1_rep	CDS	22327300	22327371	.	+	0	Parent=Os01t0577300-01
Chr01	irgsp1_rep	three_prime_UTR	22327372	22327456	.	+	.	Parent=Os01t0577300-01
Chr01	irgsp1_rep	mRNA	22338212	22340445	.	+	.	ID=Os01t0577450-00;Name=Os01t0577450-00;Locus_id=Os01g0577450;Note=Hypothetical protein.;Transcript_evidence=BT065932 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0577450-00
Chr01	irgsp1_rep	five_prime_UTR	22338212	22338624	.	+	.	Parent=Os01t0577450-00
Chr01	irgsp1_rep	five_prime_UTR	22339240	22339643	.	+	.	Parent=Os01t0577450-00
Chr01	irgsp1_rep	CDS	22339644	22339934	.	+	0	Parent=Os01t0577450-00
Chr01	irgsp1_rep	three_prime_UTR	22339935	22340445	.	+	.	Parent=Os01t0577450-00
Chr01	irgsp1_rep	mRNA	22338926	22341545	.	-	.	ID=Os01t0577600-01;Name=Os01t0577600-01;Locus_id=Os01g0577600;Note=Similar to predicted protein.;Transcript_evidence=AK289151 (DDBJ%2C Best hit);ORF_evidence=NP_001043393.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J090099O08;TENOR=Os01t0577600-01;KEGG=Os01t0577600-01
Chr01	irgsp1_rep	five_prime_UTR	22341479	22341545	.	-	.	Parent=Os01t0577600-01
Chr01	irgsp1_rep	CDS	22341019	22341478	.	-	0	Parent=Os01t0577600-01
Chr01	irgsp1_rep	CDS	22340180	22340440	.	-	2	Parent=Os01t0577600-01
Chr01	irgsp1_rep	CDS	22339138	22340081	.	-	2	Parent=Os01t0577600-01
Chr01	irgsp1_rep	three_prime_UTR	22338926	22339137	.	-	.	Parent=Os01t0577600-01
Chr01	irgsp1_rep	mRNA	22353427	22358405	.	-	.	ID=Os01t0578000-01;Name=Os01t0578000-01;Locus_id=Os01g0578000;RAP-DB Gene Symbol Synonym(s)=RAD51C%2C OsRAD51C%2C OsRad51C%2C RAD51C-1;RAP-DB Gene Name Synonym(s)=DNA REPAIR PROTEIN RAD51C%2C DNA repair protein RAD51C;CGSNL Gene Symbol=RAD51C;CGSNL Gene Name=DNA REPAIR PROTEIN RAD51C;Oryzabase Gene Symbol Synonym(s)=OsRAD51C%2C OsRad51C%2C RAD51C-1%2C RAD51C-2%2C RAD51C-3;Oryzabase Gene Name Synonym(s)=DNA repair protein RAD51C%2C Radiation sensitive51C%2C Radiation sensitive 51C;Note=DNA repair protein%2C DNA double-strand break repair%2C synaptonemal complex assembly;Transcript_evidence=JN394076 (Dongjin),AK060971;ORF_evidence=J9PFC8,Q9AWX8;GO=Biological Process: DNA repair (GO:0006281),Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP binding (GO:0005524),Molecular Function: DNA-dependent ATPase activity (GO:0008094);InterPro=DNA recombination and repair protein%2C RecA-like (IPR016467),DNA recombination and repair protein Rad51%2C C-terminal (IPR013632),DNA recombination and repair protein RecA-like%2C ATP-binding domain (IPR020588),P-loop containing nucleoside triphosphate hydrolase (IPR027417);NIAS_FLcDNA=006-202-D10;Manual Curation=May 25%2C 2016;Literature_PMID=24847337,22859673;Oryzabase=11616;Expression=AK060971;TENOR=Os01t0578000-01;KEGG=Os01t0578000-01
Chr01	irgsp1_rep	five_prime_UTR	22358326	22358405	.	-	.	Parent=Os01t0578000-01
Chr01	irgsp1_rep	CDS	22358214	22358325	.	-	0	Parent=Os01t0578000-01
Chr01	irgsp1_rep	CDS	22357861	22357965	.	-	2	Parent=Os01t0578000-01
Chr01	irgsp1_rep	CDS	22357455	22357577	.	-	2	Parent=Os01t0578000-01
Chr01	irgsp1_rep	CDS	22357181	22357214	.	-	2	Parent=Os01t0578000-01
Chr01	irgsp1_rep	CDS	22357040	22357110	.	-	1	Parent=Os01t0578000-01
Chr01	irgsp1_rep	CDS	22356734	22356960	.	-	2	Parent=Os01t0578000-01
Chr01	irgsp1_rep	CDS	22356406	22356537	.	-	0	Parent=Os01t0578000-01
Chr01	irgsp1_rep	CDS	22355630	22355696	.	-	0	Parent=Os01t0578000-01
Chr01	irgsp1_rep	CDS	22353723	22353901	.	-	2	Parent=Os01t0578000-01
Chr01	irgsp1_rep	three_prime_UTR	22353427	22353722	.	-	.	Parent=Os01t0578000-01
Chr01	irgsp1_rep	mRNA	22353484	22358366	.	-	.	ID=Os01t0578000-02;Name=Os01t0578000-02;Locus_id=Os01g0578000;RAP-DB Gene Symbol Synonym(s)=RAD51C%2C RAD51C-2;RAP-DB Gene Name Synonym(s)=DNA REPAIR PROTEIN RAD51C;CGSNL Gene Symbol=RAD51C;CGSNL Gene Name=DNA REPAIR PROTEIN RAD51C;Oryzabase Gene Symbol Synonym(s)=OsRAD51C%2C OsRad51C%2C RAD51C-1%2C RAD51C-2%2C RAD51C-3;Oryzabase Gene Name Synonym(s)=DNA repair protein RAD51C%2C Radiation sensitive51C%2C Radiation sensitive 51C;Note=Splicing variant of DNA repair protein RAD51C;Transcript_evidence=AK068701;ORF_evidence=Q657A2;GO=Biological Process: DNA repair (GO:0006281),Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP binding (GO:0005524),Molecular Function: DNA-dependent ATPase activity (GO:0008094);InterPro=DNA recombination and repair protein RecA-like%2C ATP-binding domain (IPR020588),P-loop containing nucleoside triphosphate hydrolase (IPR027417),DNA recombination and repair protein Rad51%2C C-terminal (IPR013632);NIAS_FLcDNA=J013159M13;Manual Curation=May 25%2C 2016;Literature_PMID=22859673;Oryzabase=11616;Expression=AK068701;TENOR=Os01t0578000-02;KEGG=Os01t0578000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	22358214	22358366	.	-	.	Parent=Os01t0578000-02
Chr01	irgsp1_rep	five_prime_UTR	22357948	22357965	.	-	.	Parent=Os01t0578000-02
Chr01	irgsp1_rep	CDS	22357861	22357947	.	-	0	Parent=Os01t0578000-02
Chr01	irgsp1_rep	CDS	22357455	22357577	.	-	0	Parent=Os01t0578000-02
Chr01	irgsp1_rep	CDS	22357181	22357224	.	-	0	Parent=Os01t0578000-02
Chr01	irgsp1_rep	CDS	22357040	22357110	.	-	1	Parent=Os01t0578000-02
Chr01	irgsp1_rep	CDS	22356734	22356960	.	-	2	Parent=Os01t0578000-02
Chr01	irgsp1_rep	CDS	22356406	22356537	.	-	0	Parent=Os01t0578000-02
Chr01	irgsp1_rep	CDS	22355630	22355696	.	-	0	Parent=Os01t0578000-02
Chr01	irgsp1_rep	CDS	22353723	22353901	.	-	2	Parent=Os01t0578000-02
Chr01	irgsp1_rep	three_prime_UTR	22353484	22353722	.	-	.	Parent=Os01t0578000-02
Chr01	irgsp1_rep	mRNA	22353427	22358405	.	-	.	ID=Os01t0578000-03;Name=Os01t0578000-03;Locus_id=Os01g0578000;RAP-DB Gene Symbol Synonym(s)=RAD51C%2C RAD51C-3;RAP-DB Gene Name Synonym(s)=DNA REPAIR PROTEIN RAD51C;CGSNL Gene Symbol=RAD51C;CGSNL Gene Name=DNA REPAIR PROTEIN RAD51C;Oryzabase Gene Symbol Synonym(s)=OsRAD51C%2C OsRad51C%2C RAD51C-1%2C RAD51C-2%2C RAD51C-3;Oryzabase Gene Name Synonym(s)=DNA repair protein RAD51C%2C Radiation sensitive51C%2C Radiation sensitive 51C;Note=Splicing variant of DNA repair protein RAD51C;Transcript_evidence=JN394076 (Dongjin);ORF_evidence=J9PFH4;InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417);Manual Curation=May 25%2C 2016;Literature_PMID=22859673;Oryzabase=11616
Chr01	irgsp1_rep	five_prime_UTR	22358326	22358405	.	-	.	Parent=Os01t0578000-03
Chr01	irgsp1_rep	CDS	22358214	22358325	.	-	0	Parent=Os01t0578000-03
Chr01	irgsp1_rep	CDS	22357861	22357965	.	-	2	Parent=Os01t0578000-03
Chr01	irgsp1_rep	CDS	22357455	22357577	.	-	2	Parent=Os01t0578000-03
Chr01	irgsp1_rep	CDS	22357252	22357286	.	-	2	Parent=Os01t0578000-03
Chr01	irgsp1_rep	three_prime_UTR	22357181	22357251	.	-	.	Parent=Os01t0578000-03
Chr01	irgsp1_rep	three_prime_UTR	22357040	22357110	.	-	.	Parent=Os01t0578000-03
Chr01	irgsp1_rep	three_prime_UTR	22356734	22356960	.	-	.	Parent=Os01t0578000-03
Chr01	irgsp1_rep	three_prime_UTR	22356406	22356537	.	-	.	Parent=Os01t0578000-03
Chr01	irgsp1_rep	three_prime_UTR	22355630	22355696	.	-	.	Parent=Os01t0578000-03
Chr01	irgsp1_rep	three_prime_UTR	22353427	22353901	.	-	.	Parent=Os01t0578000-03
Chr01	irgsp1_rep	mRNA	22365507	22368019	.	-	.	ID=Os01t0578200-00;Name=Os01t0578200-00;Locus_id=Os01g0578200;Note=Similar to programmed cell death protein 2.;Transcript_evidence=AK252879 (DDBJ);ORF_evidence=NP_001149515.1 (RefSeq);GO=Cellular Component: cytoplasm (GO:0005737);InterPro=Programmed cell death protein 2%2C C-terminal (IPR007320);TENOR=Os01t0578200-00;KEGG=Os01t0578200-00
Chr01	irgsp1_rep	five_prime_UTR	22367792	22368019	.	-	.	Parent=Os01t0578200-00
Chr01	irgsp1_rep	CDS	22367490	22367591	.	-	0	Parent=Os01t0578200-00
Chr01	irgsp1_rep	CDS	22367333	22367403	.	-	0	Parent=Os01t0578200-00
Chr01	irgsp1_rep	CDS	22366618	22366732	.	-	1	Parent=Os01t0578200-00
Chr01	irgsp1_rep	CDS	22365507	22365701	.	-	0	Parent=Os01t0578200-00
Chr01	irgsp1_rep	mRNA	22375575	22377307	.	+	.	ID=Os01t0578500-01;Name=Os01t0578500-01;Locus_id=Os01g0578500;RAP-DB Gene Symbol Synonym(s)=SAF%2C SaF%2C OsFbox019%2C OsFbox19%2C Os_F0070;RAP-DB Gene Name Synonym(s)=HYBRID STERILITY%2C Hybrid male sterility%2C F-box protein 19;CGSNL Gene Symbol=SAF;CGSNL Gene Name=HYBRID STERILITY;Oryzabase Gene Symbol Synonym(s)=SaF%2C OsFbox019%2C OsFbox19%2C Os_F0070;Oryzabase Gene Name Synonym(s)=Hybrid male sterility%2C F-box protein 19;Note=F-box protein%2C Indica-Japonica hybrid male sterility;Transcript_evidence=EU337974 (Genbank),EU337975 (Genbank);ORF_evidence=Q9AWX3 (UniProt),B6RRX2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),FBD (IPR006566);Manual Curation=June 12%2C 2009;Literature_PMID=19033192;Oryzabase=8207;TENOR=Os01t0578500-00
Chr01	irgsp1_rep	CDS	22375575	22376489	.	+	0	Parent=Os01t0578500-01
Chr01	irgsp1_rep	CDS	22376576	22376719	.	+	0	Parent=Os01t0578500-01
Chr01	irgsp1_rep	CDS	22376936	22377307	.	+	0	Parent=Os01t0578500-01
Chr01	irgsp1_rep	mRNA	22379059	22382876	.	+	.	ID=Os01t0578700-01;Name=Os01t0578700-01;Locus_id=Os01g0578700;CGSNL Gene Symbol=SAM;CGSNL Gene Name=HYBRID STERILITY;Oryzabase Gene Symbol Synonym(s)=SaM;Oryzabase Gene Name Synonym(s)=Hybrid male sterility;Note=Similar to SaM+.;Transcript_evidence=AK099956 (DDBJ%2C Best hit);ORF_evidence=B6RRX4 (UniProt);NIAS_FLcDNA=J013125M24;Oryzabase=8208;Expression=AK099956;TENOR=Os01t0578700-01;KEGG=Os01t0578700-01
Chr01	irgsp1_rep	five_prime_UTR	22379059	22379142	.	+	.	Parent=Os01t0578700-01
Chr01	irgsp1_rep	CDS	22379143	22379403	.	+	0	Parent=Os01t0578700-01
Chr01	irgsp1_rep	CDS	22379488	22379557	.	+	0	Parent=Os01t0578700-01
Chr01	irgsp1_rep	CDS	22380448	22380545	.	+	2	Parent=Os01t0578700-01
Chr01	irgsp1_rep	CDS	22380639	22380713	.	+	0	Parent=Os01t0578700-01
Chr01	irgsp1_rep	CDS	22380806	22380909	.	+	0	Parent=Os01t0578700-01
Chr01	irgsp1_rep	CDS	22382464	22382500	.	+	1	Parent=Os01t0578700-01
Chr01	irgsp1_rep	three_prime_UTR	22382501	22382546	.	+	.	Parent=Os01t0578700-01
Chr01	irgsp1_rep	three_prime_UTR	22382640	22382876	.	+	.	Parent=Os01t0578700-01
Chr01	irgsp1_rep	mRNA	22379143	22382500	.	+	.	ID=Os01t0578700-02;Name=Os01t0578700-02;Locus_id=Os01g0578700;RAP-DB Gene Symbol Synonym(s)=SAM%2C SaM-%2C SaM;RAP-DB Gene Name Synonym(s)=HYBRID STERILITY%2C Indica-japonica hydrid male sterility (Sa) M-%2C Hybrid male sterility;CGSNL Gene Symbol=SAM;CGSNL Gene Name=HYBRID STERILITY;Oryzabase Gene Symbol Synonym(s)=SaM;Oryzabase Gene Name Synonym(s)=Hybrid male sterility;Note=Small ubiquitin-like modifier (SUMO) E3 ligase-like protein%2C Indica-Japonica hybrid male sterility;Transcript_evidence=EU337976 (Genbank);ORF_evidence=B6RRX3 (UniProt);Manual Curation=June 18%2C 2009;Literature_PMID=19033192;Oryzabase=8208
Chr01	irgsp1_rep	CDS	22379143	22379403	.	+	0	Parent=Os01t0578700-02
Chr01	irgsp1_rep	CDS	22379488	22379559	.	+	0	Parent=Os01t0578700-02
Chr01	irgsp1_rep	CDS	22380450	22380545	.	+	0	Parent=Os01t0578700-02
Chr01	irgsp1_rep	CDS	22380639	22380713	.	+	0	Parent=Os01t0578700-02
Chr01	irgsp1_rep	CDS	22380797	22380909	.	+	0	Parent=Os01t0578700-02
Chr01	irgsp1_rep	CDS	22382464	22382500	.	+	1	Parent=Os01t0578700-02
Chr01	irgsp1_rep	mRNA	22379143	22382540	.	+	.	ID=Os01t0578700-03;Name=Os01t0578700-03;Locus_id=Os01g0578700;RAP-DB Gene Symbol Synonym(s)=SAM%2C SaM+%2C SaM;RAP-DB Gene Name Synonym(s)=HYBRID STERILITY%2C Indica-japonica hydrid male sterility (Sa) M+%2C Hybrid male sterility;CGSNL Gene Symbol=SAM;CGSNL Gene Name=HYBRID STERILITY;Oryzabase Gene Symbol Synonym(s)=SaM;Oryzabase Gene Name Synonym(s)=Hybrid male sterility;Note=Small ubiquitin-like modifier (SUMO) E3 ligase-like protein%2C Indica-Japonica hybrid male sterility;Transcript_evidence=EU337977 (Genbank);ORF_evidence=B6RRX4 (UniProt);Manual Curation=June 18%2C 2009;Literature_PMID=19033192;Oryzabase=8208
Chr01	irgsp1_rep	CDS	22379143	22379403	.	+	0	Parent=Os01t0578700-03
Chr01	irgsp1_rep	CDS	22379488	22379559	.	+	0	Parent=Os01t0578700-03
Chr01	irgsp1_rep	CDS	22380450	22380545	.	+	0	Parent=Os01t0578700-03
Chr01	irgsp1_rep	CDS	22380639	22380713	.	+	0	Parent=Os01t0578700-03
Chr01	irgsp1_rep	CDS	22380797	22380909	.	+	0	Parent=Os01t0578700-03
Chr01	irgsp1_rep	CDS	22381236	22381315	.	+	1	Parent=Os01t0578700-03
Chr01	irgsp1_rep	CDS	22382464	22382540	.	+	2	Parent=Os01t0578700-03
Chr01	irgsp1_rep	mRNA	22385203	22386611	.	+	.	ID=Os01t0578800-01;Name=Os01t0578800-01;Locus_id=Os01g0578800;Oryzabase Gene Symbol Synonym(s)=Os_F0791;Note=Conserved hypothetical protein.;Transcript_evidence=AK111466 (DDBJ%2C Best hit);ORF_evidence=A2ZUP2 (UniProt);NIAS_FLcDNA=002-183-D06;Oryzabase=17472;TENOR=Os01t0578800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	22385203	22385203	.	+	.	Parent=Os01t0578800-01
Chr01	irgsp1_rep	CDS	22385204	22386532	.	+	0	Parent=Os01t0578800-01
Chr01	irgsp1_rep	three_prime_UTR	22386533	22386611	.	+	.	Parent=Os01t0578800-01
Chr01	irgsp1_rep	mRNA	22397124	22398128	.	-	.	ID=Os01t0579000-01;Name=Os01t0579000-01;Locus_id=Os01g0579000;Note=Conserved hypothetical protein.;Transcript_evidence=AK064700 (DDBJ%2C Best hit);ORF_evidence=A2YJF8 (UniProt);NIAS_FLcDNA=002-116-G09;Expression=AK064700;TENOR=Os01t0579000-01;KEGG=Os01t0579000-01
Chr01	irgsp1_rep	five_prime_UTR	22398039	22398128	.	-	.	Parent=Os01t0579000-01
Chr01	irgsp1_rep	CDS	22397816	22398038	.	-	0	Parent=Os01t0579000-01
Chr01	irgsp1_rep	CDS	22397369	22397376	.	-	2	Parent=Os01t0579000-01
Chr01	irgsp1_rep	three_prime_UTR	22397124	22397368	.	-	.	Parent=Os01t0579000-01
Chr01	irgsp1_rep	mRNA	22427835	22430752	.	+	.	ID=Os01t0579600-01;Name=Os01t0579600-01;Locus_id=Os01g0579600;CGSNL Gene Symbol=CBL9;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN 9;Oryzabase Gene Symbol Synonym(s)=OsCBL9;Oryzabase Gene Name Synonym(s)=Calcineurin B-like protein 9;Note=Similar to Calcineurin B-like protein 9.;Transcript_evidence=AK111735 (DDBJ%2C Best hit);ORF_evidence=Q3HRN8 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand-like domain (IPR011992),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J023045O14;Oryzabase=6106;TENOR=Os01t0579600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	22427835	22427887	.	+	.	Parent=Os01t0579600-01
Chr01	irgsp1_rep	CDS	22427888	22427929	.	+	0	Parent=Os01t0579600-01
Chr01	irgsp1_rep	CDS	22428029	22428305	.	+	0	Parent=Os01t0579600-01
Chr01	irgsp1_rep	CDS	22428430	22428512	.	+	2	Parent=Os01t0579600-01
Chr01	irgsp1_rep	CDS	22429268	22429327	.	+	0	Parent=Os01t0579600-01
Chr01	irgsp1_rep	CDS	22429500	22429694	.	+	0	Parent=Os01t0579600-01
Chr01	irgsp1_rep	three_prime_UTR	22429695	22429923	.	+	.	Parent=Os01t0579600-01
Chr01	irgsp1_rep	three_prime_UTR	22430015	22430127	.	+	.	Parent=Os01t0579600-01
Chr01	irgsp1_rep	three_prime_UTR	22430311	22430752	.	+	.	Parent=Os01t0579600-01
Chr01	irgsp1_rep	mRNA	22427857	22430779	.	+	.	ID=Os01t0579600-02;Name=Os01t0579600-02;Locus_id=Os01g0579600;CGSNL Gene Symbol=CBL9;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN 9;Oryzabase Gene Symbol Synonym(s)=OsCBL9;Oryzabase Gene Name Synonym(s)=Calcineurin B-like protein 9;Note=Similar to Isoform 2 of Calcineurin B-like protein 9.;Transcript_evidence=AK100352 (DDBJ%2C Best hit);ORF_evidence=Q3HRN8 (UniProt);NIAS_FLcDNA=J023083G13;Oryzabase=6106;Expression=AK100352;TENOR=Os01t0579600-02;KEGG=Os01t0579600-02
Chr01	irgsp1_rep	five_prime_UTR	22427857	22427887	.	+	.	Parent=Os01t0579600-02
Chr01	irgsp1_rep	CDS	22427888	22428316	.	+	0	Parent=Os01t0579600-02
Chr01	irgsp1_rep	three_prime_UTR	22428317	22430779	.	+	.	Parent=Os01t0579600-02
Chr01	irgsp1_rep	mRNA	22429578	22430752	.	+	.	ID=Os01t0579600-03;Name=Os01t0579600-03;Locus_id=Os01g0579600;CGSNL Gene Symbol=CBL9;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN 9;Oryzabase Gene Symbol Synonym(s)=OsCBL9;Oryzabase Gene Name Synonym(s)=Calcineurin B-like protein 9;Note=Similar to Calcineurin B-like protein 9.;Transcript_evidence=AK111936 (DDBJ%2C Best hit);ORF_evidence=Q3HRN8 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249);NIAS_FLcDNA=001-001-E04;Oryzabase=6106;TENOR=Os01t0579600-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	22429578	22429752	.	+	.	Parent=Os01t0579600-03
Chr01	irgsp1_rep	CDS	22429753	22429923	.	+	0	Parent=Os01t0579600-03
Chr01	irgsp1_rep	CDS	22430015	22430127	.	+	0	Parent=Os01t0579600-03
Chr01	irgsp1_rep	CDS	22430311	22430365	.	+	1	Parent=Os01t0579600-03
Chr01	irgsp1_rep	three_prime_UTR	22430366	22430752	.	+	.	Parent=Os01t0579600-03
Chr01	irgsp1_rep	mRNA	22436022	22438392	.	+	.	ID=Os01t0579800-01;Name=Os01t0579800-01;Locus_id=Os01g0579800;Note=Conserved hypothetical protein.;Transcript_evidence=AK111319 (DDBJ%2C Best hit);ORF_evidence=B8AAQ4 (UniProt);NIAS_FLcDNA=002-181-C12;Expression=AK111319;TENOR=Os01t0579800-01;KEGG=Os01t0579800-01
Chr01	irgsp1_rep	five_prime_UTR	22436022	22436081	.	+	.	Parent=Os01t0579800-01
Chr01	irgsp1_rep	CDS	22436082	22436199	.	+	0	Parent=Os01t0579800-01
Chr01	irgsp1_rep	CDS	22437870	22438186	.	+	2	Parent=Os01t0579800-01
Chr01	irgsp1_rep	three_prime_UTR	22438187	22438392	.	+	.	Parent=Os01t0579800-01
Chr01	irgsp1_rep	mRNA	22439040	22441966	.	-	.	ID=Os01t0579900-01;Name=Os01t0579900-01;Locus_id=Os01g0579900;Note=Esterase/lipase/thioesterase domain containing protein.;Transcript_evidence=AK065133 (DDBJ%2C Best hit);ORF_evidence=NP_001148570.1 (RefSeq);NIAS_FLcDNA=J013001P21;Expression=AK065133;TENOR=Os01t0579900-01;KEGG=Os01t0579900-01
Chr01	irgsp1_rep	five_prime_UTR	22441826	22441966	.	-	.	Parent=Os01t0579900-01
Chr01	irgsp1_rep	CDS	22441780	22441825	.	-	0	Parent=Os01t0579900-01
Chr01	irgsp1_rep	CDS	22441363	22441481	.	-	2	Parent=Os01t0579900-01
Chr01	irgsp1_rep	CDS	22441114	22441196	.	-	0	Parent=Os01t0579900-01
Chr01	irgsp1_rep	CDS	22440456	22440577	.	-	1	Parent=Os01t0579900-01
Chr01	irgsp1_rep	CDS	22439993	22440157	.	-	2	Parent=Os01t0579900-01
Chr01	irgsp1_rep	CDS	22439771	22439864	.	-	2	Parent=Os01t0579900-01
Chr01	irgsp1_rep	CDS	22439407	22439581	.	-	1	Parent=Os01t0579900-01
Chr01	irgsp1_rep	CDS	22439264	22439287	.	-	0	Parent=Os01t0579900-01
Chr01	irgsp1_rep	three_prime_UTR	22439040	22439263	.	-	.	Parent=Os01t0579900-01
Chr01	irgsp1_rep	mRNA	22446433	22449819	.	-	.	ID=Os01t0580000-01;Name=Os01t0580000-01;Locus_id=Os01g0580000;Note=Esterase/lipase/thioesterase domain containing protein.;Transcript_evidence=AK067848 (DDBJ%2C Best hit);ORF_evidence=NP_001148570.1 (RefSeq);NIAS_FLcDNA=J013126M15;Expression=AK067848;TENOR=Os01t0580000-01;KEGG=Os01t0580000-01
Chr01	irgsp1_rep	five_prime_UTR	22449772	22449819	.	-	.	Parent=Os01t0580000-01
Chr01	irgsp1_rep	CDS	22449558	22449771	.	-	0	Parent=Os01t0580000-01
Chr01	irgsp1_rep	CDS	22449141	22449262	.	-	2	Parent=Os01t0580000-01
Chr01	irgsp1_rep	CDS	22448914	22448996	.	-	0	Parent=Os01t0580000-01
Chr01	irgsp1_rep	CDS	22447903	22448024	.	-	1	Parent=Os01t0580000-01
Chr01	irgsp1_rep	CDS	22447245	22447409	.	-	2	Parent=Os01t0580000-01
Chr01	irgsp1_rep	CDS	22447024	22447117	.	-	2	Parent=Os01t0580000-01
Chr01	irgsp1_rep	CDS	22446648	22446822	.	-	1	Parent=Os01t0580000-01
Chr01	irgsp1_rep	three_prime_UTR	22446433	22446647	.	-	.	Parent=Os01t0580000-01
Chr01	irgsp1_rep	mRNA	22446210	22449792	.	-	.	ID=Os01t0580000-02;Name=Os01t0580000-02;Locus_id=Os01g0580000;Note=Similar to esterase.;Transcript_evidence=AK121186 (DDBJ%2C Best hit);ORF_evidence=NP_001148570.1 (RefSeq);NIAS_FLcDNA=J023085B15;Expression=AK121186;TENOR=Os01t0580000-02;KEGG=Os01t0580000-02
Chr01	irgsp1_rep	five_prime_UTR	22449772	22449792	.	-	.	Parent=Os01t0580000-02
Chr01	irgsp1_rep	CDS	22449558	22449771	.	-	0	Parent=Os01t0580000-02
Chr01	irgsp1_rep	CDS	22449141	22449262	.	-	2	Parent=Os01t0580000-02
Chr01	irgsp1_rep	CDS	22448910	22448996	.	-	0	Parent=Os01t0580000-02
Chr01	irgsp1_rep	three_prime_UTR	22447903	22448909	.	-	.	Parent=Os01t0580000-02
Chr01	irgsp1_rep	three_prime_UTR	22447245	22447409	.	-	.	Parent=Os01t0580000-02
Chr01	irgsp1_rep	three_prime_UTR	22447024	22447117	.	-	.	Parent=Os01t0580000-02
Chr01	irgsp1_rep	three_prime_UTR	22446648	22446822	.	-	.	Parent=Os01t0580000-02
Chr01	irgsp1_rep	three_prime_UTR	22446210	22446572	.	-	.	Parent=Os01t0580000-02
Chr01	irgsp1_rep	mRNA	22450498	22454899	.	+	.	ID=Os01t0580100-01;Name=Os01t0580100-01;Locus_id=Os01g0580100;Note=Alg9-like mannosyltransferase family protein.;Transcript_evidence=AK064181 (DDBJ%2C Best hit);ORF_evidence=B7EFX6 (UniProt);GO=Biological Process: GPI anchor biosynthetic process (GO:0006506),Cellular Component: intrinsic to endoplasmic reticulum membrane (GO:0031227),Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=GPI mannosyltransferase (IPR005599);NIAS_FLcDNA=002-104-B07;Expression=AK064181;TENOR=Os01t0580100-01;KEGG=Os01t0580100-01 (EC:2.4.1.-)
Chr01	irgsp1_rep	five_prime_UTR	22450498	22450686	.	+	.	Parent=Os01t0580100-01
Chr01	irgsp1_rep	CDS	22450687	22450940	.	+	0	Parent=Os01t0580100-01
Chr01	irgsp1_rep	CDS	22451061	22451178	.	+	1	Parent=Os01t0580100-01
Chr01	irgsp1_rep	CDS	22451582	22451686	.	+	0	Parent=Os01t0580100-01
Chr01	irgsp1_rep	CDS	22451785	22452107	.	+	0	Parent=Os01t0580100-01
Chr01	irgsp1_rep	CDS	22452798	22453079	.	+	1	Parent=Os01t0580100-01
Chr01	irgsp1_rep	CDS	22453173	22453353	.	+	1	Parent=Os01t0580100-01
Chr01	irgsp1_rep	CDS	22453496	22453647	.	+	0	Parent=Os01t0580100-01
Chr01	irgsp1_rep	CDS	22453752	22453911	.	+	1	Parent=Os01t0580100-01
Chr01	irgsp1_rep	CDS	22454716	22454802	.	+	0	Parent=Os01t0580100-01
Chr01	irgsp1_rep	three_prime_UTR	22454803	22454899	.	+	.	Parent=Os01t0580100-01
Chr01	irgsp1_rep	mRNA	22450547	22456233	.	+	.	ID=Os01t0580100-02;Name=Os01t0580100-02;Locus_id=Os01g0580100;Note=Similar to Dolichyl-phosphate-mannose--glycolipid alpha-mannosyltransferase-like protein.;Transcript_evidence=AK069131 (DDBJ%2C Best hit);ORF_evidence=Q9LEQ5 (UniProt);GO=Biological Process: GPI anchor biosynthetic process (GO:0006506),Cellular Component: intrinsic to endoplasmic reticulum membrane (GO:0031227),Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=GPI mannosyltransferase (IPR005599);NIAS_FLcDNA=J023007E04;Expression=AK069131;TENOR=Os01t0580100-02;KEGG=Os01t0580100-02 (EC:2.4.1.-)
Chr01	irgsp1_rep	five_prime_UTR	22450547	22450686	.	+	.	Parent=Os01t0580100-02
Chr01	irgsp1_rep	CDS	22450687	22450940	.	+	0	Parent=Os01t0580100-02
Chr01	irgsp1_rep	CDS	22451061	22451178	.	+	1	Parent=Os01t0580100-02
Chr01	irgsp1_rep	CDS	22451582	22451686	.	+	0	Parent=Os01t0580100-02
Chr01	irgsp1_rep	CDS	22451785	22452107	.	+	0	Parent=Os01t0580100-02
Chr01	irgsp1_rep	CDS	22452798	22453079	.	+	1	Parent=Os01t0580100-02
Chr01	irgsp1_rep	CDS	22453173	22453353	.	+	1	Parent=Os01t0580100-02
Chr01	irgsp1_rep	CDS	22453496	22453647	.	+	0	Parent=Os01t0580100-02
Chr01	irgsp1_rep	CDS	22453752	22453926	.	+	1	Parent=Os01t0580100-02
Chr01	irgsp1_rep	three_prime_UTR	22453927	22456233	.	+	.	Parent=Os01t0580100-02
Chr01	irgsp1_rep	mRNA	22450589	22455555	.	+	.	ID=Os01t0580100-03;Name=Os01t0580100-03;Locus_id=Os01g0580100;Note=Alg9-like mannosyltransferase family protein.;Transcript_evidence=AK103451 (DDBJ%2C Best hit);ORF_evidence=B7EFX6 (UniProt);GO=Biological Process: GPI anchor biosynthetic process (GO:0006506),Cellular Component: intrinsic to endoplasmic reticulum membrane (GO:0031227),Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=GPI mannosyltransferase (IPR005599);NIAS_FLcDNA=J033129I08;Expression=AK103451;TENOR=Os01t0580100-03;KEGG=Os01t0580100-03 (EC:2.4.1.-)
Chr01	irgsp1_rep	five_prime_UTR	22450589	22450686	.	+	.	Parent=Os01t0580100-03
Chr01	irgsp1_rep	CDS	22450687	22450940	.	+	0	Parent=Os01t0580100-03
Chr01	irgsp1_rep	CDS	22451061	22451178	.	+	1	Parent=Os01t0580100-03
Chr01	irgsp1_rep	CDS	22451582	22451686	.	+	0	Parent=Os01t0580100-03
Chr01	irgsp1_rep	CDS	22451785	22452107	.	+	0	Parent=Os01t0580100-03
Chr01	irgsp1_rep	CDS	22452798	22453079	.	+	1	Parent=Os01t0580100-03
Chr01	irgsp1_rep	CDS	22453173	22453353	.	+	1	Parent=Os01t0580100-03
Chr01	irgsp1_rep	CDS	22453496	22453647	.	+	0	Parent=Os01t0580100-03
Chr01	irgsp1_rep	CDS	22453752	22453911	.	+	1	Parent=Os01t0580100-03
Chr01	irgsp1_rep	CDS	22454716	22454802	.	+	0	Parent=Os01t0580100-03
Chr01	irgsp1_rep	three_prime_UTR	22454803	22455555	.	+	.	Parent=Os01t0580100-03
Chr01	irgsp1_rep	mRNA	22455140	22456347	.	-	.	ID=Os01t0580150-00;Name=Os01t0580150-00;Locus_id=Os01g0580150;CGSNL Gene Symbol=RLCK38;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 38;Oryzabase Gene Symbol Synonym(s)=OsRLCK38;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 38;Note=Similar to Protein kinase.;Transcript_evidence=ab initio prediction;ORF_evidence=A1YKG7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);Oryzabase=18755;TENOR=Os01t0580150-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	22456029	22456347	.	-	0	Parent=Os01t0580150-00
Chr01	irgsp1_rep	CDS	22455678	22455877	.	-	2	Parent=Os01t0580150-00
Chr01	irgsp1_rep	CDS	22455140	22455409	.	-	0	Parent=Os01t0580150-00
Chr01	irgsp1_rep	mRNA	22466601	22472572	.	+	.	ID=Os01t0580200-01;Name=Os01t0580200-01;Locus_id=Os01g0580200;CGSNL Gene Symbol=BGAL3;CGSNL Gene Name=BETA-GALACTOSIDASE 3;Oryzabase Gene Symbol Synonym(s)=OsBgal3%2C OsBGal3;Oryzabase Gene Name Synonym(s)=Beta-galactosidase 2%2C Lactase 2;Note=Similar to Beta-galactosidase precursor (EC 3.2.1.23) (Lactase).;Transcript_evidence=AK103045 (DDBJ%2C Best hit);ORF_evidence=B9EXP9 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: sugar binding (GO:0005529),Molecular Function: cation binding (GO:0043169);InterPro=D-galactoside/L-rhamnose binding SUEL lectin domain (IPR000922),Glycoside hydrolase%2C family 35 (IPR001944),Galactose-binding domain-like (IPR008979),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 35%2C conserved site (IPR019801);NIAS_FLcDNA=J033117F22;Oryzabase=8291;Expression=AK103045;TENOR=Os01t0580200-01;KEGG=Os01t0580200-01 (EC:3.2.1.23)
Chr01	irgsp1_rep	five_prime_UTR	22466601	22466712	.	+	.	Parent=Os01t0580200-01
Chr01	irgsp1_rep	CDS	22466713	22466875	.	+	0	Parent=Os01t0580200-01
Chr01	irgsp1_rep	CDS	22467041	22467138	.	+	2	Parent=Os01t0580200-01
Chr01	irgsp1_rep	CDS	22467224	22467336	.	+	0	Parent=Os01t0580200-01
Chr01	irgsp1_rep	CDS	22467642	22467706	.	+	1	Parent=Os01t0580200-01
Chr01	irgsp1_rep	CDS	22467827	22467921	.	+	2	Parent=Os01t0580200-01
Chr01	irgsp1_rep	CDS	22468008	22468151	.	+	0	Parent=Os01t0580200-01
Chr01	irgsp1_rep	CDS	22468398	22468486	.	+	0	Parent=Os01t0580200-01
Chr01	irgsp1_rep	CDS	22468577	22468682	.	+	1	Parent=Os01t0580200-01
Chr01	irgsp1_rep	CDS	22468764	22468851	.	+	0	Parent=Os01t0580200-01
Chr01	irgsp1_rep	CDS	22469475	22469593	.	+	2	Parent=Os01t0580200-01
Chr01	irgsp1_rep	CDS	22469678	22469842	.	+	0	Parent=Os01t0580200-01
Chr01	irgsp1_rep	CDS	22470125	22470294	.	+	0	Parent=Os01t0580200-01
Chr01	irgsp1_rep	CDS	22470378	22470487	.	+	1	Parent=Os01t0580200-01
Chr01	irgsp1_rep	CDS	22470572	22470681	.	+	2	Parent=Os01t0580200-01
Chr01	irgsp1_rep	CDS	22470776	22470886	.	+	0	Parent=Os01t0580200-01
Chr01	irgsp1_rep	CDS	22470972	22471073	.	+	0	Parent=Os01t0580200-01
Chr01	irgsp1_rep	CDS	22471156	22471361	.	+	0	Parent=Os01t0580200-01
Chr01	irgsp1_rep	CDS	22471453	22471771	.	+	1	Parent=Os01t0580200-01
Chr01	irgsp1_rep	CDS	22471873	22471983	.	+	0	Parent=Os01t0580200-01
Chr01	irgsp1_rep	three_prime_UTR	22471984	22472572	.	+	.	Parent=Os01t0580200-01
Chr01	irgsp1_rep	mRNA	22472670	22474337	.	-	.	ID=Os01t0580300-01;Name=Os01t0580300-01;Locus_id=Os01g0580300;Note=Conserved hypothetical protein.;Transcript_evidence=AK063468 (DDBJ%2C Best hit);ORF_evidence=B8AAR1 (UniProt);NIAS_FLcDNA=001-116-A02;Expression=AK063468;TENOR=Os01t0580300-01;KEGG=Os01t0580300-01
Chr01	irgsp1_rep	five_prime_UTR	22474186	22474337	.	-	.	Parent=Os01t0580300-01
Chr01	irgsp1_rep	CDS	22473877	22474185	.	-	0	Parent=Os01t0580300-01
Chr01	irgsp1_rep	three_prime_UTR	22473221	22473876	.	-	.	Parent=Os01t0580300-01
Chr01	irgsp1_rep	three_prime_UTR	22472670	22473108	.	-	.	Parent=Os01t0580300-01
Chr01	irgsp1_rep	mRNA	22474568	22476504	.	-	.	ID=Os01t0580400-01;Name=Os01t0580400-01;Locus_id=Os01g0580400;CGSNL Gene Symbol=HAP5J;CGSNL Gene Name=HAP5J SUBUNIT OF CCAAT-BOX BINDING COMPLEX;Oryzabase Gene Symbol Synonym(s)=OsHAP5J%2C OsNF-YC8%2C NF-YC8%2C NFYC8;Oryzabase Gene Name Synonym(s)=NUCLEAR FACTOR-Y subunit C8%2C NUCLEAR FACTOR-Y subunit NF-YC8%2C NF-YC transcription factor 8%2C NF-YC subunit 8%2C NF-YC family 8;Note=Histone-fold domain containing protein.;Transcript_evidence=AK242120 (DDBJ%2C Best hit);ORF_evidence=NP_001043407.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Transcription factor CBF/NF-Y/archaeal histone (IPR003958),Histone-fold (IPR009072);NIAS_FLcDNA=J075147C14;Oryzabase=20925;TENOR=Os01t0580400-01;KEGG=Os01t0580400-01
Chr01	irgsp1_rep	five_prime_UTR	22476424	22476504	.	-	.	Parent=Os01t0580400-01
Chr01	irgsp1_rep	five_prime_UTR	22476182	22476211	.	-	.	Parent=Os01t0580400-01
Chr01	irgsp1_rep	CDS	22474853	22476181	.	-	0	Parent=Os01t0580400-01
Chr01	irgsp1_rep	three_prime_UTR	22474568	22474852	.	-	.	Parent=Os01t0580400-01
Chr01	irgsp1_rep	mRNA	22489496	22490967	.	+	.	ID=Os01t0580500-01;Name=Os01t0580500-01;Locus_id=Os01g0580500;RAP-DB Gene Symbol Synonym(s)=ACO7%2C OsACO7;RAP-DB Gene Name Synonym(s)=AMINOCYCLOPROPANE-1-CARBOXYLIC ACID OXIDASE 7%2C ACC oxidase 7;CGSNL Gene Symbol=ACO7;CGSNL Gene Name=AMINOCYCLOPROPANE-1-CARBOXYLIC ACID OXIDASE 7;Oryzabase Gene Symbol Synonym(s)=OsACO7;Oryzabase Gene Name Synonym(s)=ACC oxidase 7;Note=ACC oxidase%2C Ethylene biosynthesis;Transcript_evidence=AK102472;ORF_evidence=Q8W096;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Isopenicillin N synthase-like (IPR027443),Non-haem dioxygenase N-terminal domain (IPR026992),Oxoglutarate/iron-dependent dioxygenase (IPR005123);NIAS_FLcDNA=J033094H01;Manual Curation=November 27%2C 2009;Literature_PMID=17012402;Oryzabase=7385;TENOR=Os01t0580500-01
Chr01	irgsp1_rep	five_prime_UTR	22489496	22489617	.	+	.	Parent=Os01t0580500-01
Chr01	irgsp1_rep	CDS	22489618	22489725	.	+	0	Parent=Os01t0580500-01
Chr01	irgsp1_rep	CDS	22490015	22490845	.	+	0	Parent=Os01t0580500-01
Chr01	irgsp1_rep	three_prime_UTR	22490846	22490967	.	+	.	Parent=Os01t0580500-01
Chr01	irgsp1_rep	mRNA	22494356	22500439	.	-	.	ID=Os01t0580800-01;Name=Os01t0580800-01;Locus_id=Os01g0580800;Note=Similar to submergence induced protein SI397.;Transcript_evidence=AK243591 (DDBJ%2C Best hit);ORF_evidence=NP_001105668.1 (RefSeq);NIAS_FLcDNA=J100083G23;TENOR=Os01t0580800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	22500384	22500439	.	-	.	Parent=Os01t0580800-01
Chr01	irgsp1_rep	CDS	22500050	22500383	.	-	0	Parent=Os01t0580800-01
Chr01	irgsp1_rep	CDS	22499900	22499958	.	-	2	Parent=Os01t0580800-01
Chr01	irgsp1_rep	CDS	22498948	22499793	.	-	0	Parent=Os01t0580800-01
Chr01	irgsp1_rep	CDS	22494562	22495587	.	-	0	Parent=Os01t0580800-01
Chr01	irgsp1_rep	three_prime_UTR	22494356	22494561	.	-	.	Parent=Os01t0580800-01
Chr01	irgsp1_rep	mRNA	22535013	22538645	.	+	.	ID=Os01t0581300-01;Name=Os01t0581300-01;Locus_id=Os01g0581300;RAP-DB Gene Symbol Synonym(s)=OsLCYe;RAP-DB Gene Name Synonym(s)=epsilon-ionone-forming lycopene cyclase%2C &epsilon%3B-ionone-forming lycopene cyclase;Oryzabase Gene Symbol Synonym(s)=OsLCYe%2C OsLCYepsilon;Oryzabase Gene Name Synonym(s)=e-ionone-forming lycopene cyclase%2C lycopene e-cyclase%2C epsilon-ionone-forming lycopene cyclase%2C lycopene epsilon-cyclase;Note=Lycopene epsilon-cyclase;Transcript_evidence=AK072015,AK066182;ORF_evidence=Q8LJ81;GO=Biological Process: carotenoid biosynthetic process (GO:0016117),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705);InterPro=FAD/NAD(P)-binding domain superfamily (IPR036188),Lycopene cyclase%2C beta/epsilon (IPR010108);NIAS_FLcDNA=J013105L24,J013056J03;Manual Curation=August 5%2C 2020;Literature_PMID=22874758;Oryzabase=11532;Expression=AK072015;TENOR=Os01t0581300-01;KEGG=Os01t0581300-01 (EC:1.14.-.-)
Chr01	irgsp1_rep	five_prime_UTR	22535013	22535099	.	+	.	Parent=Os01t0581300-01
Chr01	irgsp1_rep	CDS	22535100	22535420	.	+	0	Parent=Os01t0581300-01
Chr01	irgsp1_rep	CDS	22536313	22536484	.	+	0	Parent=Os01t0581300-01
Chr01	irgsp1_rep	CDS	22536575	22536710	.	+	2	Parent=Os01t0581300-01
Chr01	irgsp1_rep	CDS	22536803	22537016	.	+	1	Parent=Os01t0581300-01
Chr01	irgsp1_rep	CDS	22537185	22537328	.	+	0	Parent=Os01t0581300-01
Chr01	irgsp1_rep	CDS	22537418	22537525	.	+	0	Parent=Os01t0581300-01
Chr01	irgsp1_rep	CDS	22537614	22537710	.	+	0	Parent=Os01t0581300-01
Chr01	irgsp1_rep	CDS	22537794	22537925	.	+	2	Parent=Os01t0581300-01
Chr01	irgsp1_rep	CDS	22538078	22538210	.	+	2	Parent=Os01t0581300-01
Chr01	irgsp1_rep	CDS	22538329	22538494	.	+	1	Parent=Os01t0581300-01
Chr01	irgsp1_rep	three_prime_UTR	22538495	22538645	.	+	.	Parent=Os01t0581300-01
Chr01	irgsp1_rep	mRNA	22538998	22542226	.	+	.	ID=Os01t0581400-01;Name=Os01t0581400-01;Locus_id=Os01g0581400;CGSNL Gene Symbol=RLCK39;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 39;Oryzabase Gene Symbol Synonym(s)=OsRLCK39;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 39;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK101023 (DDBJ%2C Best hit);ORF_evidence=A2ZUQ9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: response to stress (GO:0006950),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),UspA (IPR006016),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023150C06;Oryzabase=18756;Expression=AK101023;TENOR=Os01t0581400-01;KEGG=Os01t0581400-01
Chr01	irgsp1_rep	five_prime_UTR	22538998	22539288	.	+	.	Parent=Os01t0581400-01
Chr01	irgsp1_rep	CDS	22539289	22539499	.	+	0	Parent=Os01t0581400-01
Chr01	irgsp1_rep	CDS	22539604	22539698	.	+	2	Parent=Os01t0581400-01
Chr01	irgsp1_rep	CDS	22539819	22539940	.	+	0	Parent=Os01t0581400-01
Chr01	irgsp1_rep	CDS	22540055	22540592	.	+	1	Parent=Os01t0581400-01
Chr01	irgsp1_rep	CDS	22540664	22541995	.	+	0	Parent=Os01t0581400-01
Chr01	irgsp1_rep	three_prime_UTR	22541996	22542226	.	+	.	Parent=Os01t0581400-01
Chr01	irgsp1_rep	mRNA	22552874	22554531	.	-	.	ID=Os01t0581800-01;Name=Os01t0581800-01;Locus_id=Os01g0581800;Note=Hypothetical conserved gene.;Transcript_evidence=AK241259 (DDBJ%2C Best hit);ORF_evidence=A2WRT0 (UniProt);NIAS_FLcDNA=J065130P16;TENOR=Os01t0581800-01;KEGG=Os01t0581800-01
Chr01	irgsp1_rep	five_prime_UTR	22554467	22554531	.	-	.	Parent=Os01t0581800-01
Chr01	irgsp1_rep	CDS	22553483	22554466	.	-	0	Parent=Os01t0581800-01
Chr01	irgsp1_rep	three_prime_UTR	22552874	22553482	.	-	.	Parent=Os01t0581800-01
Chr01	irgsp1_rep	mRNA	22557515	22561678	.	-	.	ID=Os01t0581900-01;Name=Os01t0581900-01;Locus_id=Os01g0581900;Note=Conserved hypothetical protein.;Transcript_evidence=AK068030 (DDBJ%2C Best hit);ORF_evidence=B9EXQ4 (UniProt);NIAS_FLcDNA=J013134K08;Expression=AK068030;TENOR=Os01t0581900-01;KEGG=Os01t0581900-01
Chr01	irgsp1_rep	five_prime_UTR	22561465	22561678	.	-	.	Parent=Os01t0581900-01
Chr01	irgsp1_rep	five_prime_UTR	22561165	22561200	.	-	.	Parent=Os01t0581900-01
Chr01	irgsp1_rep	CDS	22560850	22561164	.	-	0	Parent=Os01t0581900-01
Chr01	irgsp1_rep	CDS	22559285	22559932	.	-	0	Parent=Os01t0581900-01
Chr01	irgsp1_rep	CDS	22559123	22559128	.	-	0	Parent=Os01t0581900-01
Chr01	irgsp1_rep	three_prime_UTR	22557515	22559122	.	-	.	Parent=Os01t0581900-01
Chr01	irgsp1_rep	mRNA	22591434	22596164	.	-	.	ID=Os01t0582400-01;Name=Os01t0582400-01;Locus_id=Os01g0582400;CGSNL Gene Symbol=CYP57;CGSNL Gene Name=CYCLOPHILIN 57;Oryzabase Gene Symbol Synonym(s)=OsCYP57%2C OsCYP-3%2C OsCYP57a%2C OsCYP57b;Oryzabase Gene Name Synonym(s)=cyclophilin 57%2C cyclophilin 3;Note=Similar to Multidomain cyclophilin type peptidyl-prolyl cis-trans isomerase.;Transcript_evidence=AK069484 (DDBJ%2C Best hit);ORF_evidence=NP_001148692.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);InterPro=Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type (IPR002130),Cyclophilin-like (IPR015891),Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type%2C conserved site (IPR020892);NIAS_FLcDNA=J023019D12;Oryzabase=10072;Expression=AK069484;TENOR=Os01t0582400-01;KEGG=Os01t0582400-01 (EC:5.2.1.8)
Chr01	irgsp1_rep	five_prime_UTR	22596058	22596164	.	-	.	Parent=Os01t0582400-01
Chr01	irgsp1_rep	CDS	22595838	22596057	.	-	0	Parent=Os01t0582400-01
Chr01	irgsp1_rep	CDS	22595396	22595574	.	-	2	Parent=Os01t0582400-01
Chr01	irgsp1_rep	CDS	22595188	22595286	.	-	0	Parent=Os01t0582400-01
Chr01	irgsp1_rep	CDS	22594943	22595046	.	-	0	Parent=Os01t0582400-01
Chr01	irgsp1_rep	CDS	22594716	22594860	.	-	1	Parent=Os01t0582400-01
Chr01	irgsp1_rep	CDS	22593315	22593537	.	-	0	Parent=Os01t0582400-01
Chr01	irgsp1_rep	CDS	22593089	22593128	.	-	2	Parent=Os01t0582400-01
Chr01	irgsp1_rep	CDS	22592326	22592533	.	-	1	Parent=Os01t0582400-01
Chr01	irgsp1_rep	CDS	22592016	22592156	.	-	0	Parent=Os01t0582400-01
Chr01	irgsp1_rep	CDS	22591771	22591911	.	-	0	Parent=Os01t0582400-01
Chr01	irgsp1_rep	three_prime_UTR	22591434	22591770	.	-	.	Parent=Os01t0582400-01
Chr01	irgsp1_rep	mRNA	22604528	22606674	.	+	.	ID=Os01t0582600-01;Name=Os01t0582600-01;Locus_id=Os01g0582600;Note=Phospholipase A2%2C active site domain containing protein.;Transcript_evidence=AK243143 (DDBJ%2C Best hit);ORF_evidence=D2CFI1 (UniProt);NIAS_FLcDNA=J100032A08;TENOR=Os01t0582600-01;KEGG=Os01t0582600-01
Chr01	irgsp1_rep	five_prime_UTR	22604528	22604712	.	+	.	Parent=Os01t0582600-01
Chr01	irgsp1_rep	CDS	22604713	22606368	.	+	0	Parent=Os01t0582600-01
Chr01	irgsp1_rep	three_prime_UTR	22606369	22606674	.	+	.	Parent=Os01t0582600-01
Chr01	irgsp1_rep	mRNA	22618198	22624094	.	+	.	ID=Os01t0583100-01;Name=Os01t0583100-01;Locus_id=Os01g0583100;Oryzabase Gene Symbol Synonym(s)=OsPP2C06/OsABI2%2C OsPP2C06%2C OsPP2C6%2C PP2C96%2C OsABI2%2C OsPP10%2C ABI2%2C OsABIL1%2C ABIL1;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C6%2C protein phosphatase 2C 6%2C protein phosphatase 10%2C OsABI-LIKE1%2C ABI-LIKE1%2C ABI-LIKE 1;Note=Similar to Protein phosphatase 2C.;Transcript_evidence=AK242616 (DDBJ%2C Best hit);ORF_evidence=A5A6P9 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J090017C19;Oryzabase=15819;TENOR=Os01t0583100-01;KEGG=Os01t0583100-01 (EC:3.1.3.16)
Chr01	irgsp1_rep	five_prime_UTR	22618198	22618199	.	+	.	Parent=Os01t0583100-01
Chr01	irgsp1_rep	CDS	22618200	22618619	.	+	0	Parent=Os01t0583100-01
Chr01	irgsp1_rep	CDS	22618749	22619072	.	+	0	Parent=Os01t0583100-01
Chr01	irgsp1_rep	CDS	22619181	22619286	.	+	0	Parent=Os01t0583100-01
Chr01	irgsp1_rep	CDS	22623384	22623724	.	+	2	Parent=Os01t0583100-01
Chr01	irgsp1_rep	three_prime_UTR	22623725	22624094	.	+	.	Parent=Os01t0583100-01
Chr01	irgsp1_rep	mRNA	22625257	22628038	.	-	.	ID=Os01t0583200-01;Name=Os01t0583200-01;Locus_id=Os01g0583200;Note=Zinc finger%2C C2H2%2C LYAR-type domain containing protein.;Transcript_evidence=AK059387 (DDBJ%2C Best hit);ORF_evidence=B6TB34 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2%2C LYAR-type (IPR014898),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=001-026-H02;Expression=AK059387;TENOR=Os01t0583200-01;KEGG=Os01t0583200-01
Chr01	irgsp1_rep	five_prime_UTR	22627931	22628038	.	-	.	Parent=Os01t0583200-01
Chr01	irgsp1_rep	CDS	22627844	22627930	.	-	0	Parent=Os01t0583200-01
Chr01	irgsp1_rep	CDS	22627637	22627711	.	-	0	Parent=Os01t0583200-01
Chr01	irgsp1_rep	CDS	22626942	22627069	.	-	0	Parent=Os01t0583200-01
Chr01	irgsp1_rep	CDS	22625896	22626343	.	-	1	Parent=Os01t0583200-01
Chr01	irgsp1_rep	CDS	22625688	22625801	.	-	0	Parent=Os01t0583200-01
Chr01	irgsp1_rep	CDS	22625504	22625566	.	-	0	Parent=Os01t0583200-01
Chr01	irgsp1_rep	three_prime_UTR	22625257	22625503	.	-	.	Parent=Os01t0583200-01
Chr01	irgsp1_rep	mRNA	22625256	22628000	.	-	.	ID=Os01t0583200-02;Name=Os01t0583200-02;Locus_id=Os01g0583200;Note=Zinc finger%2C C2H2%2C LYAR-type domain containing protein.;Transcript_evidence=AK103402 (DDBJ%2C Best hit);ORF_evidence=B6TB34 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2%2C LYAR-type (IPR014898),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J033128B21;TENOR=Os01t0583200-02
Chr01	irgsp1_rep	five_prime_UTR	22627931	22628000	.	-	.	Parent=Os01t0583200-02
Chr01	irgsp1_rep	CDS	22627844	22627930	.	-	0	Parent=Os01t0583200-02
Chr01	irgsp1_rep	CDS	22627637	22627711	.	-	0	Parent=Os01t0583200-02
Chr01	irgsp1_rep	CDS	22626942	22627069	.	-	0	Parent=Os01t0583200-02
Chr01	irgsp1_rep	CDS	22625896	22626343	.	-	1	Parent=Os01t0583200-02
Chr01	irgsp1_rep	CDS	22625688	22625801	.	-	0	Parent=Os01t0583200-02
Chr01	irgsp1_rep	CDS	22625504	22625566	.	-	0	Parent=Os01t0583200-02
Chr01	irgsp1_rep	three_prime_UTR	22625256	22625503	.	-	.	Parent=Os01t0583200-02
Chr01	irgsp1_rep	mRNA	22632732	22637148	.	-	.	ID=Os01t0583300-01;Name=Os01t0583300-01;Locus_id=Os01g0583300;Oryzabase Gene Symbol Synonym(s)=Os_F0727;Note=Zinc finger%2C C2H2%2C LYAR-type domain containing protein.;Transcript_evidence=AK242736 (DDBJ%2C Best hit);ORF_evidence=B9EXR0 (UniProt);InterPro=Zinc finger%2C C2H2%2C LYAR-type (IPR014898),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J090048L21;Oryzabase=17473;TENOR=Os01t0583300-01;KEGG=Os01t0583300-01
Chr01	irgsp1_rep	five_prime_UTR	22637129	22637148	.	-	.	Parent=Os01t0583300-01
Chr01	irgsp1_rep	CDS	22637009	22637128	.	-	0	Parent=Os01t0583300-01
Chr01	irgsp1_rep	CDS	22636816	22636890	.	-	0	Parent=Os01t0583300-01
Chr01	irgsp1_rep	CDS	22635599	22636024	.	-	0	Parent=Os01t0583300-01
Chr01	irgsp1_rep	three_prime_UTR	22635087	22635598	.	-	.	Parent=Os01t0583300-01
Chr01	irgsp1_rep	three_prime_UTR	22634778	22634924	.	-	.	Parent=Os01t0583300-01
Chr01	irgsp1_rep	three_prime_UTR	22632732	22633215	.	-	.	Parent=Os01t0583300-01
Chr01	irgsp1_rep	mRNA	22641354	22641925	.	+	.	ID=Os01t0583525-00;Name=Os01t0583525-00;Locus_id=Os01g0583525;Note=Hypothetical gene.;Transcript_evidence=tplb0015j08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0583525-00;KEGG=Os01t0583525-00
Chr01	irgsp1_rep	five_prime_UTR	22641354	22641709	.	+	.	Parent=Os01t0583525-00
Chr01	irgsp1_rep	CDS	22641710	22641925	.	+	0	Parent=Os01t0583525-00
Chr01	irgsp1_rep	mRNA	22641455	22642680	.	-	.	ID=Os01t0583600-00;Name=Os01t0583600-00;Locus_id=Os01g0583600;Note=Conserved hypothetical protein.;Transcript_evidence=AK359043 (DDBJ);ORF_evidence=B8B6N5 (UniProt);TENOR=Os01t0583600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	22641595	22642680	.	-	0	Parent=Os01t0583600-00
Chr01	irgsp1_rep	three_prime_UTR	22641455	22641594	.	-	.	Parent=Os01t0583600-00
Chr01	irgsp1_rep	mRNA	22644852	22650146	.	+	.	ID=Os01t0583700-00;Name=Os01t0583700-00;Locus_id=Os01g0583700;Oryzabase Gene Symbol Synonym(s)=OsSTA17;Note=Similar to predicted protein.;Transcript_evidence=AK333337 (DDBJ);ORF_evidence=Q8H6S8 (UniProt);Oryzabase=19329;TENOR=Os01t0583700-00;KEGG=Os01t0583700-00
Chr01	irgsp1_rep	CDS	22644852	22646102	.	+	0	Parent=Os01t0583700-00
Chr01	irgsp1_rep	three_prime_UTR	22646103	22646753	.	+	.	Parent=Os01t0583700-00
Chr01	irgsp1_rep	three_prime_UTR	22646851	22646958	.	+	.	Parent=Os01t0583700-00
Chr01	irgsp1_rep	three_prime_UTR	22647046	22647149	.	+	.	Parent=Os01t0583700-00
Chr01	irgsp1_rep	three_prime_UTR	22647253	22647343	.	+	.	Parent=Os01t0583700-00
Chr01	irgsp1_rep	three_prime_UTR	22647472	22647582	.	+	.	Parent=Os01t0583700-00
Chr01	irgsp1_rep	three_prime_UTR	22647674	22647739	.	+	.	Parent=Os01t0583700-00
Chr01	irgsp1_rep	three_prime_UTR	22648748	22648811	.	+	.	Parent=Os01t0583700-00
Chr01	irgsp1_rep	three_prime_UTR	22648880	22649437	.	+	.	Parent=Os01t0583700-00
Chr01	irgsp1_rep	three_prime_UTR	22649673	22649792	.	+	.	Parent=Os01t0583700-00
Chr01	irgsp1_rep	three_prime_UTR	22649873	22649992	.	+	.	Parent=Os01t0583700-00
Chr01	irgsp1_rep	three_prime_UTR	22650080	22650146	.	+	.	Parent=Os01t0583700-00
Chr01	irgsp1_rep	mRNA	22656369	22661862	.	+	.	ID=Os01t0583900-00;Name=Os01t0583900-00;Locus_id=Os01g0583900;Note=Similar to Translation initiation factor.;Transcript_evidence=AK374591 (DDBJ);ORF_evidence=Q8H6S8 (UniProt);InterPro=Translation initiation factor IF- 2 (IPR015760);TENOR=Os01t0583900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	22656369	22657787	.	+	0	Parent=Os01t0583900-00
Chr01	irgsp1_rep	three_prime_UTR	22657788	22657953	.	+	.	Parent=Os01t0583900-00
Chr01	irgsp1_rep	three_prime_UTR	22658062	22658169	.	+	.	Parent=Os01t0583900-00
Chr01	irgsp1_rep	three_prime_UTR	22658254	22658357	.	+	.	Parent=Os01t0583900-00
Chr01	irgsp1_rep	three_prime_UTR	22658460	22658547	.	+	.	Parent=Os01t0583900-00
Chr01	irgsp1_rep	three_prime_UTR	22658650	22658760	.	+	.	Parent=Os01t0583900-00
Chr01	irgsp1_rep	three_prime_UTR	22658845	22658910	.	+	.	Parent=Os01t0583900-00
Chr01	irgsp1_rep	three_prime_UTR	22660630	22660689	.	+	.	Parent=Os01t0583900-00
Chr01	irgsp1_rep	three_prime_UTR	22660759	22661301	.	+	.	Parent=Os01t0583900-00
Chr01	irgsp1_rep	three_prime_UTR	22661536	22661655	.	+	.	Parent=Os01t0583900-00
Chr01	irgsp1_rep	three_prime_UTR	22661735	22661862	.	+	.	Parent=Os01t0583900-00
Chr01	irgsp1_rep	mRNA	22676086	22678573	.	-	.	ID=Os01t0584032-00;Name=Os01t0584032-00;Locus_id=Os01g0584032;Note=Similar to skin secretory protein xP2.;Transcript_evidence=EU973312 (DDBJ);ORF_evidence=NP_001152023.1 (RefSeq);TENOR=Os01t0584032-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	22678188	22678573	.	-	.	Parent=Os01t0584032-00
Chr01	irgsp1_rep	CDS	22678186	22678187	.	-	0	Parent=Os01t0584032-00
Chr01	irgsp1_rep	CDS	22676086	22676503	.	-	1	Parent=Os01t0584032-00
Chr01	irgsp1_rep	mRNA	22677778	22678619	.	+	.	ID=Os01t0584100-01;Name=Os01t0584100-01;Locus_id=Os01g0584100;Note=Similar to hydroxyproline-rich glycoprotein family protein.;Transcript_evidence=AK109126 (DDBJ%2C Best hit);ORF_evidence=NP_177422.1 (RefSeq);NIAS_FLcDNA=002-155-D05;TENOR=Os01t0584100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	22677778	22678248	.	+	.	Parent=Os01t0584100-01
Chr01	irgsp1_rep	CDS	22678249	22678569	.	+	0	Parent=Os01t0584100-01
Chr01	irgsp1_rep	three_prime_UTR	22678570	22678619	.	+	.	Parent=Os01t0584100-01
Chr01	irgsp1_rep	mRNA	22683901	22688068	.	-	.	ID=Os01t0584200-00;Name=Os01t0584200-00;Locus_id=Os01g0584200;Note=Similar to Myosin XI-K headless derivative (Fragment).;Transcript_evidence=AK331420 (DDBJ);ORF_evidence=E9N633 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Dilute (IPR002710),Dil domain (IPR018444);TENOR=Os01t0584200-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	22687848	22688068	.	-	.	Parent=Os01t0584200-00
Chr01	irgsp1_rep	five_prime_UTR	22687589	22687777	.	-	.	Parent=Os01t0584200-00
Chr01	irgsp1_rep	five_prime_UTR	22687311	22687480	.	-	.	Parent=Os01t0584200-00
Chr01	irgsp1_rep	CDS	22686921	22687310	.	-	0	Parent=Os01t0584200-00
Chr01	irgsp1_rep	CDS	22686568	22686707	.	-	0	Parent=Os01t0584200-00
Chr01	irgsp1_rep	CDS	22686315	22686432	.	-	1	Parent=Os01t0584200-00
Chr01	irgsp1_rep	CDS	22686146	22686214	.	-	0	Parent=Os01t0584200-00
Chr01	irgsp1_rep	CDS	22686007	22686063	.	-	0	Parent=Os01t0584200-00
Chr01	irgsp1_rep	CDS	22685746	22685907	.	-	0	Parent=Os01t0584200-00
Chr01	irgsp1_rep	CDS	22685520	22685663	.	-	0	Parent=Os01t0584200-00
Chr01	irgsp1_rep	CDS	22685214	22685420	.	-	0	Parent=Os01t0584200-00
Chr01	irgsp1_rep	CDS	22684989	22685126	.	-	0	Parent=Os01t0584200-00
Chr01	irgsp1_rep	CDS	22684837	22684907	.	-	0	Parent=Os01t0584200-00
Chr01	irgsp1_rep	CDS	22684647	22684746	.	-	1	Parent=Os01t0584200-00
Chr01	irgsp1_rep	CDS	22684454	22684567	.	-	0	Parent=Os01t0584200-00
Chr01	irgsp1_rep	CDS	22684282	22684362	.	-	0	Parent=Os01t0584200-00
Chr01	irgsp1_rep	CDS	22684100	22684197	.	-	0	Parent=Os01t0584200-00
Chr01	irgsp1_rep	CDS	22683901	22684015	.	-	1	Parent=Os01t0584200-00
Chr01	irgsp1_rep	mRNA	22683593	22688031	.	+	.	ID=Os01t0584250-01;Name=Os01t0584250-01;Locus_id=Os01g0584250;Note=Hypothetical gene.;Transcript_evidence=AK287919 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065216B14;TENOR=Os01t0584250-01;KEGG=Os01t0584250-01
Chr01	irgsp1_rep	five_prime_UTR	22683593	22683991	.	+	.	Parent=Os01t0584250-01
Chr01	irgsp1_rep	CDS	22683992	22684015	.	+	0	Parent=Os01t0584250-01
Chr01	irgsp1_rep	CDS	22684100	22684197	.	+	0	Parent=Os01t0584250-01
Chr01	irgsp1_rep	CDS	22684282	22684362	.	+	1	Parent=Os01t0584250-01
Chr01	irgsp1_rep	CDS	22684454	22684567	.	+	1	Parent=Os01t0584250-01
Chr01	irgsp1_rep	CDS	22684647	22684746	.	+	1	Parent=Os01t0584250-01
Chr01	irgsp1_rep	CDS	22684837	22684851	.	+	0	Parent=Os01t0584250-01
Chr01	irgsp1_rep	three_prime_UTR	22684852	22684907	.	+	.	Parent=Os01t0584250-01
Chr01	irgsp1_rep	three_prime_UTR	22684989	22685126	.	+	.	Parent=Os01t0584250-01
Chr01	irgsp1_rep	three_prime_UTR	22685214	22685420	.	+	.	Parent=Os01t0584250-01
Chr01	irgsp1_rep	three_prime_UTR	22685520	22685663	.	+	.	Parent=Os01t0584250-01
Chr01	irgsp1_rep	three_prime_UTR	22685746	22685907	.	+	.	Parent=Os01t0584250-01
Chr01	irgsp1_rep	three_prime_UTR	22686007	22686063	.	+	.	Parent=Os01t0584250-01
Chr01	irgsp1_rep	three_prime_UTR	22686146	22686238	.	+	.	Parent=Os01t0584250-01
Chr01	irgsp1_rep	three_prime_UTR	22686315	22686432	.	+	.	Parent=Os01t0584250-01
Chr01	irgsp1_rep	three_prime_UTR	22686568	22686707	.	+	.	Parent=Os01t0584250-01
Chr01	irgsp1_rep	three_prime_UTR	22686921	22687480	.	+	.	Parent=Os01t0584250-01
Chr01	irgsp1_rep	three_prime_UTR	22687593	22687753	.	+	.	Parent=Os01t0584250-01
Chr01	irgsp1_rep	three_prime_UTR	22687865	22688031	.	+	.	Parent=Os01t0584250-01
Chr01	irgsp1_rep	mRNA	22691686	22692492	.	-	.	ID=Os01t0584300-01;Name=Os01t0584300-01;Locus_id=Os01g0584300;Note=Conserved hypothetical protein.;Transcript_evidence=AK073289 (DDBJ%2C Best hit);ORF_evidence=NP_001051236.1 (RefSeq);NIAS_FLcDNA=J033024F10;TENOR=Os01t0584300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	22692047	22692492	.	-	.	Parent=Os01t0584300-01
Chr01	irgsp1_rep	CDS	22691795	22692046	.	-	0	Parent=Os01t0584300-01
Chr01	irgsp1_rep	three_prime_UTR	22691686	22691794	.	-	.	Parent=Os01t0584300-01
Chr01	irgsp1_rep	mRNA	22727081	22728388	.	+	.	ID=Os01t0584800-01;Name=Os01t0584800-01;Locus_id=Os01g0584800;Note=Similar to binding.;Transcript_evidence=AK063284 (DDBJ%2C Best hit);ORF_evidence=NP_001154279.1 (RefSeq);NIAS_FLcDNA=001-113-D05;TENOR=Os01t0584800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	22727081	22727149	.	+	0	Parent=Os01t0584800-01
Chr01	irgsp1_rep	CDS	22727939	22728082	.	+	0	Parent=Os01t0584800-01
Chr01	irgsp1_rep	three_prime_UTR	22728083	22728388	.	+	.	Parent=Os01t0584800-01
Chr01	irgsp1_rep	mRNA	22731943	22733237	.	+	.	ID=Os01t0584900-01;Name=Os01t0584900-01;Locus_id=Os01g0584900;CGSNL Gene Symbol=WRKY77;CGSNL Gene Name=WRKY GENE 77;Oryzabase Gene Symbol Synonym(s)=OsWRKY77%2C WRKY-77;Oryzabase Gene Name Synonym(s)=Rice WRKY gene77;Note=WRKY transcription factor 28-like (WRKY5) (WRKY transcription factor 77).;Transcript_evidence=AK108522 (DDBJ%2C Best hit);ORF_evidence=A2WRV6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);NIAS_FLcDNA=002-144-B05;Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6592;Expression=AK108522;TENOR=Os01t0584900-01;KEGG=Os01t0584900-01
Chr01	irgsp1_rep	five_prime_UTR	22731943	22731985	.	+	.	Parent=Os01t0584900-01
Chr01	irgsp1_rep	CDS	22731986	22732290	.	+	0	Parent=Os01t0584900-01
Chr01	irgsp1_rep	CDS	22732395	22732559	.	+	1	Parent=Os01t0584900-01
Chr01	irgsp1_rep	CDS	22732660	22732930	.	+	1	Parent=Os01t0584900-01
Chr01	irgsp1_rep	three_prime_UTR	22732931	22733237	.	+	.	Parent=Os01t0584900-01
Chr01	irgsp1_rep	mRNA	22742545	22747123	.	+	.	ID=Os01t0585100-01;Name=Os01t0585100-01;Locus_id=Os01g0585100;Note=Similar to Integral membrane protein.;Transcript_evidence=AK069774 (DDBJ%2C Best hit);ORF_evidence=B4F879 (UniProt);InterPro=Protein of unknown function DUF2838 (IPR021261);NIAS_FLcDNA=J023028H21;Expression=AK069774;TENOR=Os01t0585100-01;KEGG=Os01t0585100-01
Chr01	irgsp1_rep	five_prime_UTR	22742545	22742604	.	+	.	Parent=Os01t0585100-01
Chr01	irgsp1_rep	CDS	22742605	22742682	.	+	0	Parent=Os01t0585100-01
Chr01	irgsp1_rep	CDS	22742821	22742904	.	+	0	Parent=Os01t0585100-01
Chr01	irgsp1_rep	CDS	22743379	22743436	.	+	0	Parent=Os01t0585100-01
Chr01	irgsp1_rep	CDS	22743530	22743630	.	+	2	Parent=Os01t0585100-01
Chr01	irgsp1_rep	CDS	22744052	22744147	.	+	0	Parent=Os01t0585100-01
Chr01	irgsp1_rep	CDS	22744239	22744332	.	+	0	Parent=Os01t0585100-01
Chr01	irgsp1_rep	CDS	22745685	22745922	.	+	2	Parent=Os01t0585100-01
Chr01	irgsp1_rep	CDS	22746547	22746913	.	+	1	Parent=Os01t0585100-01
Chr01	irgsp1_rep	three_prime_UTR	22746914	22747123	.	+	.	Parent=Os01t0585100-01
Chr01	irgsp1_rep	mRNA	22747354	22748143	.	+	.	ID=Os01t0585200-01;Name=Os01t0585200-01;Locus_id=Os01g0585200;Note=Similar to cDNA clone:J023088C01%2C full insert sequence.;Transcript_evidence=AK107734 (DDBJ%2C Best hit);ORF_evidence=B7EQF1 (UniProt);NIAS_FLcDNA=002-132-G01;Expression=AK107734;TENOR=Os01t0585200-01;KEGG=Os01t0585200-01
Chr01	irgsp1_rep	five_prime_UTR	22747354	22747405	.	+	.	Parent=Os01t0585200-01
Chr01	irgsp1_rep	CDS	22747406	22747783	.	+	0	Parent=Os01t0585200-01
Chr01	irgsp1_rep	three_prime_UTR	22747784	22748143	.	+	.	Parent=Os01t0585200-01
Chr01	irgsp1_rep	mRNA	22754546	22755398	.	-	.	ID=Os01t0585300-01;Name=Os01t0585300-01;Locus_id=Os01g0585300;Note=Protein of unknown function DUF1118 family protein.;Transcript_evidence=AK071353 (DDBJ%2C Best hit),AK099180 (DDBJ%2C Best hit);ORF_evidence=A2WRV9 (UniProt);InterPro=Protein of unknown function DUF1118 (IPR009500);NIAS_FLcDNA=J023094M23,J023103B06;Expression=AK071353;TENOR=Os01t0585300-01;KEGG=Os01t0585300-01
Chr01	irgsp1_rep	five_prime_UTR	22755346	22755398	.	-	.	Parent=Os01t0585300-01
Chr01	irgsp1_rep	CDS	22755226	22755345	.	-	0	Parent=Os01t0585300-01
Chr01	irgsp1_rep	CDS	22754683	22755126	.	-	0	Parent=Os01t0585300-01
Chr01	irgsp1_rep	three_prime_UTR	22754546	22754682	.	-	.	Parent=Os01t0585300-01
Chr01	irgsp1_rep	mRNA	22755984	22757293	.	+	.	ID=Os01t0585400-01;Name=Os01t0585400-01;Locus_id=Os01g0585400;Note=Similar to DDB1A (DAMAGED DNA BINDING PROTEIN 1A)%3B DNA binding / protein binding.;Transcript_evidence=AK103584 (DDBJ%2C Best hit);ORF_evidence=NP_001118940.1 (RefSeq);NIAS_FLcDNA=J033133B01;Expression=AK103584;TENOR=Os01t0585400-01;KEGG=Os01t0585400-01
Chr01	irgsp1_rep	five_prime_UTR	22755984	22756078	.	+	.	Parent=Os01t0585400-01
Chr01	irgsp1_rep	CDS	22756079	22756218	.	+	0	Parent=Os01t0585400-01
Chr01	irgsp1_rep	CDS	22756869	22756965	.	+	1	Parent=Os01t0585400-01
Chr01	irgsp1_rep	three_prime_UTR	22756966	22757293	.	+	.	Parent=Os01t0585400-01
Chr01	irgsp1_rep	mRNA	22767949	22772569	.	+	.	ID=Os01t0585600-01;Name=Os01t0585600-01;Locus_id=Os01g0585600;Note=Protein of unknown function DUF632 domain containing protein.;Transcript_evidence=AK064970 (DDBJ%2C Best hit);ORF_evidence=B9EXR8 (UniProt);InterPro=Domain of unknown function DUF632 (IPR006867),Domain of unknown function DUF630 (IPR006868);NIAS_FLcDNA=J013001B11;Expression=AK064970;TENOR=Os01t0585600-01;KEGG=Os01t0585600-01
Chr01	irgsp1_rep	five_prime_UTR	22767949	22768378	.	+	.	Parent=Os01t0585600-01
Chr01	irgsp1_rep	five_prime_UTR	22768520	22768866	.	+	.	Parent=Os01t0585600-01
Chr01	irgsp1_rep	CDS	22768867	22769785	.	+	0	Parent=Os01t0585600-01
Chr01	irgsp1_rep	CDS	22770060	22770238	.	+	2	Parent=Os01t0585600-01
Chr01	irgsp1_rep	CDS	22770502	22770725	.	+	0	Parent=Os01t0585600-01
Chr01	irgsp1_rep	CDS	22771308	22771638	.	+	1	Parent=Os01t0585600-01
Chr01	irgsp1_rep	CDS	22771857	22772261	.	+	0	Parent=Os01t0585600-01
Chr01	irgsp1_rep	three_prime_UTR	22772262	22772569	.	+	.	Parent=Os01t0585600-01
Chr01	irgsp1_rep	mRNA	22769281	22772580	.	+	.	ID=Os01t0585600-02;Name=Os01t0585600-02;Locus_id=Os01g0585600;Note=Hypothetical conserved gene.;Transcript_evidence=AK065984 (DDBJ%2C Best hit);ORF_evidence=B9EXR8 (UniProt);InterPro=Domain of unknown function DUF632 (IPR006867);NIAS_FLcDNA=J013045J07;Expression=AK065984;TENOR=Os01t0585600-02;KEGG=Os01t0585600-02
Chr01	irgsp1_rep	CDS	22769281	22769785	.	+	0	Parent=Os01t0585600-02
Chr01	irgsp1_rep	CDS	22770060	22770238	.	+	2	Parent=Os01t0585600-02
Chr01	irgsp1_rep	CDS	22770502	22770725	.	+	0	Parent=Os01t0585600-02
Chr01	irgsp1_rep	CDS	22771308	22771638	.	+	1	Parent=Os01t0585600-02
Chr01	irgsp1_rep	CDS	22771857	22772261	.	+	0	Parent=Os01t0585600-02
Chr01	irgsp1_rep	three_prime_UTR	22772262	22772580	.	+	.	Parent=Os01t0585600-02
Chr01	irgsp1_rep	mRNA	22772048	22772615	.	+	.	ID=Os01t0585600-03;Name=Os01t0585600-03;Locus_id=Os01g0585600;Note=Similar to proline-rich family protein.;Transcript_evidence=AK062064 (DDBJ%2C Best hit);ORF_evidence=NP_190697.1 (RefSeq);NIAS_FLcDNA=001-044-D03;Expression=AK062064;TENOR=Os01t0585600-03;KEGG=Os01t0585600-03
Chr01	irgsp1_rep	five_prime_UTR	22772048	22772048	.	+	.	Parent=Os01t0585600-03
Chr01	irgsp1_rep	CDS	22772049	22772261	.	+	0	Parent=Os01t0585600-03
Chr01	irgsp1_rep	three_prime_UTR	22772262	22772615	.	+	.	Parent=Os01t0585600-03
Chr01	irgsp1_rep	mRNA	22768844	22772439	.	-	.	ID=Os01t0585650-00;Name=Os01t0585650-00;Locus_id=Os01g0585650;Note=Hypothetical protein.;Transcript_evidence=tplb0042b11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0585650-00
Chr01	irgsp1_rep	five_prime_UTR	22771855	22772439	.	-	.	Parent=Os01t0585650-00
Chr01	irgsp1_rep	five_prime_UTR	22771301	22771630	.	-	.	Parent=Os01t0585650-00
Chr01	irgsp1_rep	five_prime_UTR	22770500	22770718	.	-	.	Parent=Os01t0585650-00
Chr01	irgsp1_rep	five_prime_UTR	22770040	22770236	.	-	.	Parent=Os01t0585650-00
Chr01	irgsp1_rep	five_prime_UTR	22769535	22769762	.	-	.	Parent=Os01t0585650-00
Chr01	irgsp1_rep	CDS	22768986	22769534	.	-	0	Parent=Os01t0585650-00
Chr01	irgsp1_rep	three_prime_UTR	22768844	22768985	.	-	.	Parent=Os01t0585650-00
Chr01	irgsp1_rep	mRNA	22779111	22782682	.	+	.	ID=Os01t0585700-01;Name=Os01t0585700-01;Locus_id=Os01g0585700;Note=SIT4 phosphatase-associated protein family protein.;Transcript_evidence=AK067338 (DDBJ%2C Best hit);ORF_evidence=NP_174335.4 (RefSeq);InterPro=SIT4 phosphatase-associated protein family (IPR007587);NIAS_FLcDNA=J013100L14;Expression=AK067338;TENOR=Os01t0585700-01;KEGG=Os01t0585700-01
Chr01	irgsp1_rep	five_prime_UTR	22779111	22779112	.	+	.	Parent=Os01t0585700-01
Chr01	irgsp1_rep	CDS	22779113	22779163	.	+	0	Parent=Os01t0585700-01
Chr01	irgsp1_rep	CDS	22780005	22780108	.	+	0	Parent=Os01t0585700-01
Chr01	irgsp1_rep	CDS	22780189	22780354	.	+	1	Parent=Os01t0585700-01
Chr01	irgsp1_rep	CDS	22780426	22780548	.	+	0	Parent=Os01t0585700-01
Chr01	irgsp1_rep	CDS	22780652	22780734	.	+	0	Parent=Os01t0585700-01
Chr01	irgsp1_rep	CDS	22780832	22780973	.	+	1	Parent=Os01t0585700-01
Chr01	irgsp1_rep	CDS	22781223	22781252	.	+	0	Parent=Os01t0585700-01
Chr01	irgsp1_rep	CDS	22781476	22781546	.	+	0	Parent=Os01t0585700-01
Chr01	irgsp1_rep	CDS	22781631	22782222	.	+	1	Parent=Os01t0585700-01
Chr01	irgsp1_rep	three_prime_UTR	22782223	22782682	.	+	.	Parent=Os01t0585700-01
Chr01	irgsp1_rep	mRNA	22792878	22793723	.	+	.	ID=Os01t0586000-00;Name=Os01t0586000-00;Locus_id=Os01g0586000;Note=Similar to H0714H04.7 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01JU5 (UniProt);TENOR=Os01t0586000-00
Chr01	irgsp1_rep	CDS	22792878	22792915	.	+	0	Parent=Os01t0586000-00
Chr01	irgsp1_rep	CDS	22793011	22793152	.	+	1	Parent=Os01t0586000-00
Chr01	irgsp1_rep	CDS	22793397	22793426	.	+	0	Parent=Os01t0586000-00
Chr01	irgsp1_rep	CDS	22793649	22793723	.	+	0	Parent=Os01t0586000-00
Chr01	irgsp1_rep	mRNA	22809664	22810684	.	+	.	ID=Os01t0586450-00;Name=Os01t0586450-00;Locus_id=Os01g0586450;Note=Hypothetical protein.;Transcript_evidence=tplb0043n03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0586450-00
Chr01	irgsp1_rep	CDS	22809664	22810684	.	+	0	Parent=Os01t0586450-00
Chr01	irgsp1_rep	mRNA	22820253	22823095	.	-	.	ID=Os01t0586600-01;Name=Os01t0586600-01;Locus_id=Os01g0586600;Oryzabase Gene Symbol Synonym(s)=OsCBSX7%2C OsCBSX7a%2C OsCBSX7b%2C OsCBSCBS1;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSX7%2C CBS domain containing protein OsCBSX7;Note=Similar to AKIN gamma.;Transcript_evidence=AK069698 (DDBJ%2C Best hit);ORF_evidence=B4FX20 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Cystathionine beta-synthase%2C core (IPR000644);NIAS_FLcDNA=J023027C14;Oryzabase=10324;Expression=AK069698;TENOR=Os01t0586600-01;KEGG=Os01t0586600-01
Chr01	irgsp1_rep	five_prime_UTR	22822523	22823095	.	-	.	Parent=Os01t0586600-01
Chr01	irgsp1_rep	CDS	22822363	22822522	.	-	0	Parent=Os01t0586600-01
Chr01	irgsp1_rep	CDS	22821777	22822282	.	-	2	Parent=Os01t0586600-01
Chr01	irgsp1_rep	three_prime_UTR	22821230	22821776	.	-	.	Parent=Os01t0586600-01
Chr01	irgsp1_rep	three_prime_UTR	22820894	22821066	.	-	.	Parent=Os01t0586600-01
Chr01	irgsp1_rep	three_prime_UTR	22820253	22820805	.	-	.	Parent=Os01t0586600-01
Chr01	irgsp1_rep	mRNA	22824809	22826277	.	-	.	ID=Os01t0586800-00;Name=Os01t0586800-00;Locus_id=Os01g0586800;CGSNL Gene Symbol=WRKY27;CGSNL Gene Name=RICE WRKY GENE27;Oryzabase Gene Symbol Synonym(s)=OsWRKY27;Oryzabase Gene Name Synonym(s)=Rice WRKY gene27;Note=Similar to WRKY transcription factor 5 (Fragment).;Transcript_evidence=BT037307 (DDBJ);ORF_evidence=Q09I59 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6539;TENOR=Os01t0586800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	22826156	22826277	.	-	.	Parent=Os01t0586800-00
Chr01	irgsp1_rep	CDS	22826060	22826155	.	-	0	Parent=Os01t0586800-00
Chr01	irgsp1_rep	CDS	22824809	22825297	.	-	0	Parent=Os01t0586800-00
Chr01	irgsp1_rep	mRNA	22835224	22835478	.	+	.	ID=Os01t0586801-00;Name=Os01t0586801-00;Locus_id=Os01g0586801;Note=Similar to Maturase K (Fragment).;Transcript_evidence=AF348493 (DDBJ);ORF_evidence=E9L8E9 (UniProt);TENOR=Os01t0586801-00;KEGG=Os01t0586801-00
Chr01	irgsp1_rep	five_prime_UTR	22835224	22835259	.	+	.	Parent=Os01t0586801-00
Chr01	irgsp1_rep	CDS	22835260	22835478	.	+	0	Parent=Os01t0586801-00
Chr01	irgsp1_rep	mRNA	22838199	22838610	.	+	.	ID=Os01t0586900-00;Name=Os01t0586900-00;Locus_id=Os01g0586900;Note=Non-protein coding transcript.;Transcript_evidence=EU953847 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0586900-00
Chr01	irgsp1_rep	exon	22838199	22838610	.	+	.	Parent=Os01t0586900-00
Chr01	irgsp1_rep	mRNA	22855514	22859716	.	-	.	ID=Os01t0587000-01;Name=Os01t0587000-01;Locus_id=Os01g0587000;Note=Similar to Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d subunit) (Vacuolar proton pump d subunit) (V-ATPase 41 KDa accessory protein) (DVA41).;Transcript_evidence=AK067605 (DDBJ%2C Best hit);ORF_evidence=B2BA42 (UniProt);GO=Biological Process: ATP hydrolysis coupled proton transport (GO:0015991),Cellular Component: proton-transporting two-sector ATPase complex%2C proton-transporting domain (GO:0033177),Cellular Component: proton-transporting V-type ATPase%2C V0 domain (GO:0033179),Molecular Function: hydrogen ion transmembrane transporter activity (GO:0015078);InterPro=ATPase%2C V0/A0 complex%2C subunit C/D (IPR002843),ATPase%2C V0 complex%2C subunit D (IPR016727);NIAS_FLcDNA=J013111L13;Expression=AK067605;TENOR=Os01t0587000-01;KEGG=Os01t0587000-01 (EC:3.6.3.14)
Chr01	irgsp1_rep	five_prime_UTR	22859602	22859716	.	-	.	Parent=Os01t0587000-01
Chr01	irgsp1_rep	CDS	22859421	22859601	.	-	0	Parent=Os01t0587000-01
Chr01	irgsp1_rep	CDS	22858688	22858808	.	-	2	Parent=Os01t0587000-01
Chr01	irgsp1_rep	CDS	22858466	22858573	.	-	1	Parent=Os01t0587000-01
Chr01	irgsp1_rep	CDS	22858283	22858385	.	-	1	Parent=Os01t0587000-01
Chr01	irgsp1_rep	CDS	22858100	22858180	.	-	0	Parent=Os01t0587000-01
Chr01	irgsp1_rep	CDS	22857932	22858017	.	-	0	Parent=Os01t0587000-01
Chr01	irgsp1_rep	CDS	22857752	22857811	.	-	1	Parent=Os01t0587000-01
Chr01	irgsp1_rep	CDS	22857628	22857676	.	-	1	Parent=Os01t0587000-01
Chr01	irgsp1_rep	CDS	22856575	22856709	.	-	0	Parent=Os01t0587000-01
Chr01	irgsp1_rep	CDS	22855898	22856029	.	-	0	Parent=Os01t0587000-01
Chr01	irgsp1_rep	three_prime_UTR	22855514	22855897	.	-	.	Parent=Os01t0587000-01
Chr01	irgsp1_rep	mRNA	22868537	22870640	.	+	.	ID=Os01t0587150-00;Name=Os01t0587150-00;Locus_id=Os01g0587150;Note=Hypothetical protein.;Transcript_evidence=tplb0048i05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0587150-00
Chr01	irgsp1_rep	CDS	22868537	22870640	.	+	0	Parent=Os01t0587150-00
Chr01	irgsp1_rep	mRNA	22868546	22871788	.	-	.	ID=Os01t0587300-00;Name=Os01t0587300-00;Locus_id=Os01g0587300;Note=Similar to C2 domain-containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_177610.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),Phosphoribosyltransferase C-terminal (IPR013583),C2 membrane targeting protein (IPR018029);TENOR=Os01t0587300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	22868546	22871788	.	-	0	Parent=Os01t0587300-00
Chr01	irgsp1_rep	mRNA	22879904	22895941	.	-	.	ID=Os01t0587400-01;Name=Os01t0587400-01;Locus_id=Os01g0587400;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK121329 (DDBJ%2C Best hit);ORF_evidence=A2WRY3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),S-receptor-like serine/threonine-protein kinase (IPR024171);NIAS_FLcDNA=J023118A19;TENOR=Os01t0587400-01
Chr01	irgsp1_rep	five_prime_UTR	22895691	22895941	.	-	.	Parent=Os01t0587400-01
Chr01	irgsp1_rep	five_prime_UTR	22894538	22894633	.	-	.	Parent=Os01t0587400-01
Chr01	irgsp1_rep	five_prime_UTR	22882457	22882479	.	-	.	Parent=Os01t0587400-01
Chr01	irgsp1_rep	CDS	22880153	22882456	.	-	0	Parent=Os01t0587400-01
Chr01	irgsp1_rep	three_prime_UTR	22879904	22880152	.	-	.	Parent=Os01t0587400-01
Chr01	irgsp1_rep	mRNA	22888446	22889111	.	-	.	ID=Os01t0587500-00;Name=Os01t0587500-00;Locus_id=Os01g0587500;Note=Heat shock protein Hsp20 domain containing protein.;Transcript_evidence=CU406330 (DDBJ%2C Best hit);ORF_evidence=NP_001172439.1 (RefSeq);InterPro=Heat shock protein Hsp20 (IPR002068),HSP20-like chaperone (IPR008978);TENOR=Os01t0587500-00;KEGG=Os01t0587500-00
Chr01	irgsp1_rep	five_prime_UTR	22889050	22889111	.	-	.	Parent=Os01t0587500-00
Chr01	irgsp1_rep	CDS	22888531	22889049	.	-	0	Parent=Os01t0587500-00
Chr01	irgsp1_rep	three_prime_UTR	22888446	22888530	.	-	.	Parent=Os01t0587500-00
Chr01	irgsp1_rep	mRNA	22899829	22900317	.	+	.	ID=Os01t0587900-00;Name=Os01t0587900-00;Locus_id=Os01g0587900;Note=Similar to OSIGBa0125M19.6 protein.;Transcript_evidence=EU942860 (DDBJ);ORF_evidence=Q00RI0 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Legume lectin%2C beta chain (IPR001220),Concanavalin A-like lectin/glucanase (IPR008985),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320);TENOR=Os01t0587900-00
Chr01	irgsp1_rep	CDS	22899829	22900317	.	+	0	Parent=Os01t0587900-00
Chr01	irgsp1_rep	mRNA	22901067	22902273	.	-	.	ID=Os01t0588000-01;Name=Os01t0588000-01;Locus_id=Os01g0588000;Note=Heat shock protein Hsp20 domain containing protein.;Transcript_evidence=AK109917 (DDBJ%2C Best hit);ORF_evidence=NP_001151358.1 (RefSeq);InterPro=Heat shock protein Hsp20 (IPR002068),HSP20-like chaperone (IPR008978);NIAS_FLcDNA=002-150-D11;Expression=AK109917;TENOR=Os01t0588000-01;KEGG=Os01t0588000-01
Chr01	irgsp1_rep	five_prime_UTR	22902115	22902273	.	-	.	Parent=Os01t0588000-01
Chr01	irgsp1_rep	CDS	22902015	22902114	.	-	0	Parent=Os01t0588000-01
Chr01	irgsp1_rep	CDS	22901166	22901875	.	-	2	Parent=Os01t0588000-01
Chr01	irgsp1_rep	three_prime_UTR	22901067	22901165	.	-	.	Parent=Os01t0588000-01
Chr01	irgsp1_rep	mRNA	22906348	22907811	.	+	.	ID=Os01t0588100-00;Name=Os01t0588100-00;Locus_id=Os01g0588100;Note=Similar to Hypersensitive-induced response protein.;Transcript_evidence=AJ292360 (DDBJ);ORF_evidence=A6YGE4 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Band 7 protein (IPR001107),Stomatin (IPR001972);TENOR=Os01t0588100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	22906348	22906361	.	+	.	Parent=Os01t0588100-00
Chr01	irgsp1_rep	CDS	22906362	22906550	.	+	0	Parent=Os01t0588100-00
Chr01	irgsp1_rep	CDS	22906737	22906857	.	+	0	Parent=Os01t0588100-00
Chr01	irgsp1_rep	CDS	22907177	22907811	.	+	2	Parent=Os01t0588100-00
Chr01	irgsp1_rep	mRNA	22908290	22910674	.	-	.	ID=Os01t0588200-01;Name=Os01t0588200-01;Locus_id=Os01g0588200;Oryzabase Gene Symbol Synonym(s)=OSVDAC3%2C osvdac3%2C OsVDAC3%2C VDAC3;Oryzabase Gene Name Synonym(s)=voltage-dependent anion channel 3%2C voltage-dependent anion-selective channel 3;Note=Voltage-dependent anion channel.;Transcript_evidence=AK070745 (DDBJ%2C Best hit);ORF_evidence=Q8VXC6 (UniProt);GO=Biological Process: anion transport (GO:0006820),Biological Process: regulation of anion transport (GO:0044070),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial outer membrane (GO:0005741),Molecular Function: voltage-gated anion channel activity (GO:0008308);InterPro=Porin%2C eukaryotic type (IPR001925);NIAS_FLcDNA=J023068C08;Oryzabase=14523;TENOR=Os01t0588200-01
Chr01	irgsp1_rep	five_prime_UTR	22910543	22910674	.	-	.	Parent=Os01t0588200-01
Chr01	irgsp1_rep	CDS	22910500	22910542	.	-	0	Parent=Os01t0588200-01
Chr01	irgsp1_rep	CDS	22910290	22910357	.	-	2	Parent=Os01t0588200-01
Chr01	irgsp1_rep	CDS	22909513	22909623	.	-	0	Parent=Os01t0588200-01
Chr01	irgsp1_rep	CDS	22909321	22909410	.	-	0	Parent=Os01t0588200-01
Chr01	irgsp1_rep	CDS	22909021	22909229	.	-	0	Parent=Os01t0588200-01
Chr01	irgsp1_rep	CDS	22908545	22908851	.	-	1	Parent=Os01t0588200-01
Chr01	irgsp1_rep	three_prime_UTR	22908290	22908544	.	-	.	Parent=Os01t0588200-01
Chr01	irgsp1_rep	mRNA	22908302	22910631	.	-	.	ID=Os01t0588200-02;Name=Os01t0588200-02;Locus_id=Os01g0588200;Oryzabase Gene Symbol Synonym(s)=OSVDAC3%2C osvdac3%2C OsVDAC3%2C VDAC3;Oryzabase Gene Name Synonym(s)=voltage-dependent anion channel 3%2C voltage-dependent anion-selective channel 3;Note=Voltage-dependent anion channel.;Transcript_evidence=AK104055 (DDBJ%2C Best hit),AK104419 (DDBJ%2C Best hit);ORF_evidence=Q8VXC6 (UniProt);GO=Biological Process: anion transport (GO:0006820),Biological Process: regulation of anion transport (GO:0044070),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial outer membrane (GO:0005741),Molecular Function: voltage-gated anion channel activity (GO:0008308);InterPro=Porin%2C eukaryotic type (IPR001925);NIAS_FLcDNA=001-024-B09,006-205-B06;Oryzabase=14523;TENOR=Os01t0588200-02
Chr01	irgsp1_rep	five_prime_UTR	22910543	22910631	.	-	.	Parent=Os01t0588200-02
Chr01	irgsp1_rep	CDS	22910500	22910542	.	-	0	Parent=Os01t0588200-02
Chr01	irgsp1_rep	CDS	22910290	22910357	.	-	2	Parent=Os01t0588200-02
Chr01	irgsp1_rep	CDS	22909513	22909623	.	-	0	Parent=Os01t0588200-02
Chr01	irgsp1_rep	CDS	22909321	22909410	.	-	0	Parent=Os01t0588200-02
Chr01	irgsp1_rep	CDS	22909021	22909229	.	-	0	Parent=Os01t0588200-02
Chr01	irgsp1_rep	CDS	22908545	22908851	.	-	1	Parent=Os01t0588200-02
Chr01	irgsp1_rep	three_prime_UTR	22908302	22908544	.	-	.	Parent=Os01t0588200-02
Chr01	irgsp1_rep	mRNA	22908530	22910566	.	+	.	ID=Os01t0588300-00;Name=Os01t0588300-00;Locus_id=Os01g0588300;Note=Hypothetical protein.;Transcript_evidence=BT016888 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0588300-00
Chr01	irgsp1_rep	five_prime_UTR	22908530	22908864	.	+	.	Parent=Os01t0588300-00
Chr01	irgsp1_rep	five_prime_UTR	22909034	22909222	.	+	.	Parent=Os01t0588300-00
Chr01	irgsp1_rep	five_prime_UTR	22909305	22909402	.	+	.	Parent=Os01t0588300-00
Chr01	irgsp1_rep	five_prime_UTR	22909499	22909504	.	+	.	Parent=Os01t0588300-00
Chr01	irgsp1_rep	CDS	22909505	22909615	.	+	0	Parent=Os01t0588300-00
Chr01	irgsp1_rep	CDS	22910281	22910346	.	+	0	Parent=Os01t0588300-00
Chr01	irgsp1_rep	CDS	22910488	22910566	.	+	0	Parent=Os01t0588300-00
Chr01	irgsp1_rep	mRNA	22914602	22916173	.	-	.	ID=Os01t0588400-01;Name=Os01t0588400-01;Locus_id=Os01g0588400;Note=Band 7 protein family protein.;Transcript_evidence=AK107346 (DDBJ%2C Best hit);ORF_evidence=NP_001105623.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Band 7 protein (IPR001107),Stomatin (IPR001972);NIAS_FLcDNA=002-126-G10;Expression=AK107346;TENOR=Os01t0588400-01;KEGG=Os01t0588400-01
Chr01	irgsp1_rep	five_prime_UTR	22916071	22916173	.	-	.	Parent=Os01t0588400-01
Chr01	irgsp1_rep	CDS	22915686	22916070	.	-	0	Parent=Os01t0588400-01
Chr01	irgsp1_rep	CDS	22914738	22915288	.	-	2	Parent=Os01t0588400-01
Chr01	irgsp1_rep	three_prime_UTR	22914602	22914737	.	-	.	Parent=Os01t0588400-01
Chr01	irgsp1_rep	mRNA	22918453	22923739	.	-	.	ID=Os01t0588500-01;Name=Os01t0588500-01;Locus_id=Os01g0588500;CGSNL Gene Symbol=RLCK40;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 40;Oryzabase Gene Symbol Synonym(s)=OsRLCK40%2C PTK1%2C OsPTK1;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 40%2C Protein Tyrosine Kinase 1;Note=Similar to Avr9/Cf-9 induced kinase 1.;Transcript_evidence=AK103037 (DDBJ%2C Best hit);ORF_evidence=B6TR03 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033117E11;Oryzabase=18757;Expression=AK103037;TENOR=Os01t0588500-01;KEGG=Os01t0588500-01
Chr01	irgsp1_rep	five_prime_UTR	22923553	22923739	.	-	.	Parent=Os01t0588500-01
Chr01	irgsp1_rep	CDS	22923315	22923552	.	-	0	Parent=Os01t0588500-01
Chr01	irgsp1_rep	CDS	22921503	22921840	.	-	2	Parent=Os01t0588500-01
Chr01	irgsp1_rep	CDS	22921272	22921407	.	-	0	Parent=Os01t0588500-01
Chr01	irgsp1_rep	CDS	22920597	22920733	.	-	2	Parent=Os01t0588500-01
Chr01	irgsp1_rep	CDS	22920385	22920508	.	-	0	Parent=Os01t0588500-01
Chr01	irgsp1_rep	CDS	22919279	22919790	.	-	2	Parent=Os01t0588500-01
Chr01	irgsp1_rep	three_prime_UTR	22918453	22919278	.	-	.	Parent=Os01t0588500-01
Chr01	irgsp1_rep	mRNA	22919260	22923596	.	+	.	ID=Os01t0588550-00;Name=Os01t0588550-00;Locus_id=Os01g0588550;Note=Hypothetical protein.;Transcript_evidence=tplb0027d05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0588550-00
Chr01	irgsp1_rep	five_prime_UTR	22919260	22919780	.	+	.	Parent=Os01t0588550-00
Chr01	irgsp1_rep	five_prime_UTR	22920370	22920504	.	+	.	Parent=Os01t0588550-00
Chr01	irgsp1_rep	five_prime_UTR	22920593	22920724	.	+	.	Parent=Os01t0588550-00
Chr01	irgsp1_rep	five_prime_UTR	22921264	22921406	.	+	.	Parent=Os01t0588550-00
Chr01	irgsp1_rep	five_prime_UTR	22921502	22921771	.	+	.	Parent=Os01t0588550-00
Chr01	irgsp1_rep	CDS	22921772	22921840	.	+	0	Parent=Os01t0588550-00
Chr01	irgsp1_rep	CDS	22923336	22923596	.	+	0	Parent=Os01t0588550-00
Chr01	irgsp1_rep	mRNA	22929149	22930118	.	+	.	ID=Os01t0588600-00;Name=Os01t0588600-00;Locus_id=Os01g0588600;Oryzabase Gene Name Synonym(s)=Protein of unknown function DUF572 family;Note=Protein of unknown function DUF572 family protein.;Transcript_evidence=EU946091 (DDBJ);ORF_evidence=NP_173156.1 (RefSeq);InterPro=CWC16 protein (IPR007590);Oryzabase=23371;TENOR=Os01t0588600-00;KEGG=Os01t0588600-00
Chr01	irgsp1_rep	five_prime_UTR	22929149	22929242	.	+	.	Parent=Os01t0588600-00
Chr01	irgsp1_rep	CDS	22929243	22930118	.	+	0	Parent=Os01t0588600-00
Chr01	irgsp1_rep	mRNA	22931955	22937186	.	+	.	ID=Os01t0588700-01;Name=Os01t0588700-01;Locus_id=Os01g0588700;Note=Protein of unknown function DUF572 family protein.;Transcript_evidence=AK066951 (DDBJ%2C Best hit),AK071911 (DDBJ%2C Best hit);ORF_evidence=NP_173156.1 (RefSeq);InterPro=CWC16 protein (IPR007590);NIAS_FLcDNA=J013090C12,J013059D18;TENOR=Os01t0588700-01
Chr01	irgsp1_rep	five_prime_UTR	22931955	22932183	.	+	.	Parent=Os01t0588700-01
Chr01	irgsp1_rep	CDS	22932184	22932381	.	+	0	Parent=Os01t0588700-01
Chr01	irgsp1_rep	CDS	22933324	22933473	.	+	0	Parent=Os01t0588700-01
Chr01	irgsp1_rep	CDS	22933568	22933702	.	+	0	Parent=Os01t0588700-01
Chr01	irgsp1_rep	CDS	22933803	22933868	.	+	0	Parent=Os01t0588700-01
Chr01	irgsp1_rep	CDS	22935408	22935473	.	+	0	Parent=Os01t0588700-01
Chr01	irgsp1_rep	CDS	22935593	22935682	.	+	0	Parent=Os01t0588700-01
Chr01	irgsp1_rep	CDS	22936303	22936384	.	+	0	Parent=Os01t0588700-01
Chr01	irgsp1_rep	CDS	22936592	22936797	.	+	2	Parent=Os01t0588700-01
Chr01	irgsp1_rep	three_prime_UTR	22936798	22937186	.	+	.	Parent=Os01t0588700-01
Chr01	irgsp1_rep	mRNA	22948164	22952187	.	+	.	ID=Os01t0588800-01;Name=Os01t0588800-01;Locus_id=Os01g0588800;Note=Protein of unknown function DUF185 family protein.;Transcript_evidence=AK072399 (DDBJ%2C Best hit);ORF_evidence=B6SLS9 (UniProt);InterPro=Protein of unknown function DUF185 (IPR003788);NIAS_FLcDNA=J023080H11;Expression=AK072399;TENOR=Os01t0588800-01;KEGG=Os01t0588800-01
Chr01	irgsp1_rep	five_prime_UTR	22948164	22948191	.	+	.	Parent=Os01t0588800-01
Chr01	irgsp1_rep	CDS	22948192	22948483	.	+	0	Parent=Os01t0588800-01
Chr01	irgsp1_rep	CDS	22948583	22948644	.	+	2	Parent=Os01t0588800-01
Chr01	irgsp1_rep	CDS	22948745	22948888	.	+	0	Parent=Os01t0588800-01
Chr01	irgsp1_rep	CDS	22949096	22949206	.	+	0	Parent=Os01t0588800-01
Chr01	irgsp1_rep	CDS	22949286	22949481	.	+	0	Parent=Os01t0588800-01
Chr01	irgsp1_rep	CDS	22950343	22950401	.	+	2	Parent=Os01t0588800-01
Chr01	irgsp1_rep	CDS	22950503	22950555	.	+	0	Parent=Os01t0588800-01
Chr01	irgsp1_rep	CDS	22950625	22950847	.	+	1	Parent=Os01t0588800-01
Chr01	irgsp1_rep	CDS	22951122	22951230	.	+	0	Parent=Os01t0588800-01
Chr01	irgsp1_rep	CDS	22951320	22951585	.	+	2	Parent=Os01t0588800-01
Chr01	irgsp1_rep	three_prime_UTR	22951586	22952187	.	+	.	Parent=Os01t0588800-01
Chr01	irgsp1_rep	mRNA	22955070	22959148	.	-	.	ID=Os01t0588900-01;Name=Os01t0588900-01;Locus_id=Os01g0588900;RAP-DB Gene Symbol Synonym(s)=LOG1%2C LOG%2C Log%2C log;RAP-DB Gene Name Synonym(s)=LONELY GUY 1%2C LONELY GUY%2C Lonely Guy%2C lonely guy%2C Protein LONELY GUY%2C Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG;CGSNL Gene Symbol=LOG1;CGSNL Gene Name=LONELY GUY 1;Oryzabase Gene Symbol Synonym(s)=LOG1%2C LOG%2C Log%2C log;Oryzabase Gene Name Synonym(s)=LONELY GUY%2C Lonely Guy%2C lonely guy%2C Protein LONELY GUY%2C Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG;Note=Cytokinin-activating enzyme%2C Bioactive cytokinin synthesis;Transcript_evidence=AK071695;ORF_evidence=Q5ZC82;InterPro=Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG (IPR005269);NIAS_FLcDNA=J023109F04;Manual Curation=March 19%2C 2010;Literature_PMID=17287810;Oryzabase=6732;Expression=AK071695;TENOR=Os01t0588900-01;KEGG=Os01t0588900-01
Chr01	irgsp1_rep	five_prime_UTR	22959027	22959148	.	-	.	Parent=Os01t0588900-01
Chr01	irgsp1_rep	CDS	22958838	22959026	.	-	0	Parent=Os01t0588900-01
Chr01	irgsp1_rep	CDS	22958233	22958330	.	-	0	Parent=Os01t0588900-01
Chr01	irgsp1_rep	CDS	22957573	22957603	.	-	1	Parent=Os01t0588900-01
Chr01	irgsp1_rep	CDS	22956679	22956778	.	-	0	Parent=Os01t0588900-01
Chr01	irgsp1_rep	CDS	22956507	22956577	.	-	2	Parent=Os01t0588900-01
Chr01	irgsp1_rep	CDS	22955612	22955755	.	-	0	Parent=Os01t0588900-01
Chr01	irgsp1_rep	CDS	22955409	22955504	.	-	0	Parent=Os01t0588900-01
Chr01	irgsp1_rep	three_prime_UTR	22955070	22955408	.	-	.	Parent=Os01t0588900-01
Chr01	irgsp1_rep	mRNA	22958289	22959145	.	-	.	ID=Os01t0588900-02;Name=Os01t0588900-02;Locus_id=Os01g0588900;CGSNL Gene Symbol=LOG1;CGSNL Gene Name=LONELY GUY 1;Oryzabase Gene Symbol Synonym(s)=LOG1%2C LOG%2C Log%2C log;Oryzabase Gene Name Synonym(s)=LONELY GUY%2C Lonely Guy%2C lonely guy%2C Protein LONELY GUY%2C Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG;Note=Similar to carboxy-lyase.;Transcript_evidence=AK111103 (DDBJ%2C Best hit);ORF_evidence=Q5ZC82 (UniProt);NIAS_FLcDNA=002-175-H03;Oryzabase=6732;Expression=AK111103;TENOR=Os01t0588900-02;KEGG=Os01t0588900-02
Chr01	irgsp1_rep	five_prime_UTR	22959027	22959145	.	-	.	Parent=Os01t0588900-02
Chr01	irgsp1_rep	CDS	22958778	22959026	.	-	0	Parent=Os01t0588900-02
Chr01	irgsp1_rep	three_prime_UTR	22958289	22958777	.	-	.	Parent=Os01t0588900-02
Chr01	irgsp1_rep	mRNA	22980027	22983152	.	-	.	ID=Os01t0589000-01;Name=Os01t0589000-01;Locus_id=Os01g0589000;Note=Nucleic acid-binding%2C OB-fold domain containing protein.;Transcript_evidence=AK099851 (DDBJ%2C Best hit);ORF_evidence=Q9M9H4 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=Ribosomal protein S1%2C RNA-binding domain (IPR003029),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),RNA-binding domain%2C S1 (IPR022967);NIAS_FLcDNA=J013110C21;Expression=AK099851;TENOR=Os01t0589000-01;KEGG=Os01t0589000-01
Chr01	irgsp1_rep	five_prime_UTR	22983136	22983152	.	-	.	Parent=Os01t0589000-01
Chr01	irgsp1_rep	CDS	22982527	22983135	.	-	0	Parent=Os01t0589000-01
Chr01	irgsp1_rep	CDS	22982308	22982383	.	-	0	Parent=Os01t0589000-01
Chr01	irgsp1_rep	CDS	22982133	22982203	.	-	2	Parent=Os01t0589000-01
Chr01	irgsp1_rep	CDS	22981875	22981955	.	-	0	Parent=Os01t0589000-01
Chr01	irgsp1_rep	CDS	22981321	22981418	.	-	0	Parent=Os01t0589000-01
Chr01	irgsp1_rep	CDS	22981040	22981165	.	-	1	Parent=Os01t0589000-01
Chr01	irgsp1_rep	CDS	22980833	22980881	.	-	1	Parent=Os01t0589000-01
Chr01	irgsp1_rep	CDS	22980516	22980722	.	-	0	Parent=Os01t0589000-01
Chr01	irgsp1_rep	three_prime_UTR	22980027	22980515	.	-	.	Parent=Os01t0589000-01
Chr01	irgsp1_rep	mRNA	22983392	22985787	.	+	.	ID=Os01t0589100-01;Name=Os01t0589100-01;Locus_id=Os01g0589100;Note=Conserved hypothetical protein.;Transcript_evidence=AK121456 (DDBJ%2C Best hit);ORF_evidence=B8AB35 (UniProt);NIAS_FLcDNA=J023143G15;Expression=AK121456;TENOR=Os01t0589100-01;KEGG=Os01t0589100-01
Chr01	irgsp1_rep	five_prime_UTR	22983392	22983479	.	+	.	Parent=Os01t0589100-01
Chr01	irgsp1_rep	CDS	22983480	22983602	.	+	0	Parent=Os01t0589100-01
Chr01	irgsp1_rep	CDS	22985473	22985583	.	+	0	Parent=Os01t0589100-01
Chr01	irgsp1_rep	three_prime_UTR	22985584	22985787	.	+	.	Parent=Os01t0589100-01
Chr01	irgsp1_rep	mRNA	22986666	22987781	.	+	.	ID=Os01t0589200-00;Name=Os01t0589200-00;Locus_id=Os01g0589200;Note=Similar to Embryo-abundant protein EMB-like.;Transcript_evidence=EU973272 (DDBJ);ORF_evidence=B3TLV5 (UniProt);TENOR=Os01t0589200-00;KEGG=Os01t0589200-00
Chr01	irgsp1_rep	CDS	22986666	22987381	.	+	0	Parent=Os01t0589200-00
Chr01	irgsp1_rep	CDS	22987487	22987781	.	+	1	Parent=Os01t0589200-00
Chr01	irgsp1_rep	mRNA	22988229	22991922	.	+	.	ID=Os01t0589300-01;Name=Os01t0589300-01;Locus_id=Os01g0589300;Note=Similar to Single myb histone 1.;Transcript_evidence=AK103040 (DDBJ%2C Best hit);ORF_evidence=Q5NKH9 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Histone H1/H5 (IPR005818),Homeodomain-like (IPR009057),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J033117F01;Expression=AK103040;TENOR=Os01t0589300-01;KEGG=Os01t0589300-01
Chr01	irgsp1_rep	five_prime_UTR	22988229	22988560	.	+	.	Parent=Os01t0589300-01
Chr01	irgsp1_rep	CDS	22988561	22988710	.	+	0	Parent=Os01t0589300-01
Chr01	irgsp1_rep	CDS	22989333	22989565	.	+	0	Parent=Os01t0589300-01
Chr01	irgsp1_rep	CDS	22990548	22990632	.	+	1	Parent=Os01t0589300-01
Chr01	irgsp1_rep	CDS	22990842	22990925	.	+	0	Parent=Os01t0589300-01
Chr01	irgsp1_rep	CDS	22991003	22991335	.	+	0	Parent=Os01t0589300-01
Chr01	irgsp1_rep	CDS	22991423	22991440	.	+	0	Parent=Os01t0589300-01
Chr01	irgsp1_rep	three_prime_UTR	22991441	22991922	.	+	.	Parent=Os01t0589300-01
Chr01	irgsp1_rep	mRNA	22991054	22991939	.	+	.	ID=Os01t0589300-02;Name=Os01t0589300-02;Locus_id=Os01g0589300;Note=Similar to MYB19 protein (Fragment).;Transcript_evidence=AK058846 (DDBJ%2C Best hit);ORF_evidence=Q5NKH9 (UniProt);NIAS_FLcDNA=001-004-G05;Expression=AK058846;TENOR=Os01t0589300-02;KEGG=Os01t0589300-02
Chr01	irgsp1_rep	CDS	22991054	22991335	.	+	0	Parent=Os01t0589300-02
Chr01	irgsp1_rep	CDS	22991423	22991440	.	+	0	Parent=Os01t0589300-02
Chr01	irgsp1_rep	three_prime_UTR	22991441	22991939	.	+	.	Parent=Os01t0589300-02
Chr01	irgsp1_rep	mRNA	22991813	22994258	.	-	.	ID=Os01t0589400-01;Name=Os01t0589400-01;Locus_id=Os01g0589400;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK109665 (DDBJ%2C Best hit);ORF_evidence=A2ZUX2 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=002-145-A03;Expression=AK109665;TENOR=Os01t0589400-01;KEGG=Os01t0589400-01
Chr01	irgsp1_rep	five_prime_UTR	22994172	22994258	.	-	.	Parent=Os01t0589400-01
Chr01	irgsp1_rep	CDS	22993608	22994171	.	-	0	Parent=Os01t0589400-01
Chr01	irgsp1_rep	CDS	22992506	22992613	.	-	0	Parent=Os01t0589400-01
Chr01	irgsp1_rep	three_prime_UTR	22991813	22992505	.	-	.	Parent=Os01t0589400-01
Chr01	irgsp1_rep	mRNA	22996071	22998341	.	-	.	ID=Os01t0589500-01;Name=Os01t0589500-01;Locus_id=Os01g0589500;Note=Uncharacterised conserved protein UCP009193 domain containing protein.;Transcript_evidence=AK099494 (DDBJ%2C Best hit);ORF_evidence=Q7X9L1 (UniProt);InterPro=Uncharacterised conserved protein UCP009193 (IPR016549);NIAS_FLcDNA=J013027F04;TENOR=Os01t0589500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	22998191	22998341	.	-	.	Parent=Os01t0589500-01
Chr01	irgsp1_rep	CDS	22998029	22998190	.	-	0	Parent=Os01t0589500-01
Chr01	irgsp1_rep	CDS	22997212	22997292	.	-	0	Parent=Os01t0589500-01
Chr01	irgsp1_rep	CDS	22996409	22996768	.	-	0	Parent=Os01t0589500-01
Chr01	irgsp1_rep	three_prime_UTR	22996071	22996408	.	-	.	Parent=Os01t0589500-01
Chr01	irgsp1_rep	mRNA	22996133	22998289	.	-	.	ID=Os01t0589500-02;Name=Os01t0589500-02;Locus_id=Os01g0589500;Note=Uncharacterised conserved protein UCP009193 domain containing protein.;Transcript_evidence=AK061874 (DDBJ%2C Best hit);ORF_evidence=Q7X9L1 (UniProt);InterPro=Uncharacterised conserved protein UCP009193 (IPR016549);NIAS_FLcDNA=001-041-A07;Expression=AK061874;TENOR=Os01t0589500-02;KEGG=Os01t0589500-02
Chr01	irgsp1_rep	five_prime_UTR	22998191	22998289	.	-	.	Parent=Os01t0589500-02
Chr01	irgsp1_rep	CDS	22998029	22998190	.	-	0	Parent=Os01t0589500-02
Chr01	irgsp1_rep	CDS	22997212	22997292	.	-	0	Parent=Os01t0589500-02
Chr01	irgsp1_rep	CDS	22996409	22996768	.	-	0	Parent=Os01t0589500-02
Chr01	irgsp1_rep	three_prime_UTR	22996133	22996408	.	-	.	Parent=Os01t0589500-02
Chr01	irgsp1_rep	mRNA	23000088	23002368	.	+	.	ID=Os01t0589700-01;Name=Os01t0589700-01;Locus_id=Os01g0589700;Note=Conserved hypothetical protein.;Transcript_evidence=AK242119 (DDBJ%2C Best hit);ORF_evidence=Q5ZC72 (UniProt);NIAS_FLcDNA=J075146O17;TENOR=Os01t0589700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	23000088	23000330	.	+	.	Parent=Os01t0589700-01
Chr01	irgsp1_rep	five_prime_UTR	23000951	23001018	.	+	.	Parent=Os01t0589700-01
Chr01	irgsp1_rep	CDS	23001019	23001572	.	+	0	Parent=Os01t0589700-01
Chr01	irgsp1_rep	CDS	23001913	23001982	.	+	1	Parent=Os01t0589700-01
Chr01	irgsp1_rep	three_prime_UTR	23001983	23002368	.	+	.	Parent=Os01t0589700-01
Chr01	irgsp1_rep	mRNA	23004127	23004931	.	+	.	ID=Os01t0589800-01;Name=Os01t0589800-01;Locus_id=Os01g0589800;Note=Similar to OHP2.;Transcript_evidence=AK240975 (DDBJ%2C Best hit);ORF_evidence=B6U8H4 (UniProt);InterPro=Chlorophyll A-B binding protein (IPR022796),Chlorophyll a/b binding protein domain (IPR023329);NIAS_FLcDNA=J065047K22;TENOR=Os01t0589800-01;KEGG=Os01t0589800-01
Chr01	irgsp1_rep	five_prime_UTR	23004127	23004127	.	+	.	Parent=Os01t0589800-01
Chr01	irgsp1_rep	CDS	23004128	23004222	.	+	0	Parent=Os01t0589800-01
Chr01	irgsp1_rep	CDS	23004724	23004838	.	+	1	Parent=Os01t0589800-01
Chr01	irgsp1_rep	three_prime_UTR	23004839	23004931	.	+	.	Parent=Os01t0589800-01
Chr01	irgsp1_rep	mRNA	23005565	23008941	.	-	.	ID=Os01t0589900-00;Name=Os01t0589900-00;Locus_id=Os01g0589900;Oryzabase Gene Symbol Synonym(s)=PPR;Oryzabase Gene Name Synonym(s)=Pentatricopeptide repeat (PPR) protein;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8S263 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);Oryzabase=22505;TENOR=Os01t0589900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	23005757	23008941	.	-	0	Parent=Os01t0589900-00
Chr01	irgsp1_rep	CDS	23005565	23005622	.	-	1	Parent=Os01t0589900-00
Chr01	irgsp1_rep	mRNA	23014343	23016905	.	-	.	ID=Os01t0590100-00;Name=Os01t0590100-00;Locus_id=Os01g0590100;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2ZUX7 (UniProt);TENOR=Os01t0590100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	23016695	23016905	.	-	0	Parent=Os01t0590100-00
Chr01	irgsp1_rep	CDS	23016369	23016482	.	-	2	Parent=Os01t0590100-00
Chr01	irgsp1_rep	CDS	23016049	23016285	.	-	2	Parent=Os01t0590100-00
Chr01	irgsp1_rep	CDS	23015760	23015941	.	-	2	Parent=Os01t0590100-00
Chr01	irgsp1_rep	CDS	23014343	23014354	.	-	0	Parent=Os01t0590100-00
Chr01	irgsp1_rep	mRNA	23023170	23026116	.	-	.	ID=Os01t0590200-01;Name=Os01t0590200-01;Locus_id=Os01g0590200;Note=Conserved hypothetical protein.;Transcript_evidence=AK063416 (DDBJ%2C Best hit),AK099235 (DDBJ%2C Best hit),AK105022 (DDBJ%2C Best hit);ORF_evidence=A2WS09 (UniProt);NIAS_FLcDNA=001-115-B09,J013105L12,001-010-G09;TENOR=Os01t0590200-01
Chr01	irgsp1_rep	five_prime_UTR	23025996	23026116	.	-	.	Parent=Os01t0590200-01
Chr01	irgsp1_rep	five_prime_UTR	23025838	23025883	.	-	.	Parent=Os01t0590200-01
Chr01	irgsp1_rep	CDS	23025669	23025837	.	-	0	Parent=Os01t0590200-01
Chr01	irgsp1_rep	CDS	23025349	23025408	.	-	2	Parent=Os01t0590200-01
Chr01	irgsp1_rep	CDS	23025030	23025266	.	-	2	Parent=Os01t0590200-01
Chr01	irgsp1_rep	CDS	23024730	23024911	.	-	2	Parent=Os01t0590200-01
Chr01	irgsp1_rep	CDS	23023479	23024015	.	-	0	Parent=Os01t0590200-01
Chr01	irgsp1_rep	three_prime_UTR	23023170	23023478	.	-	.	Parent=Os01t0590200-01
Chr01	irgsp1_rep	mRNA	23030252	23031000	.	+	.	ID=Os01t0590300-01;Name=Os01t0590300-01;Locus_id=Os01g0590300;Note=Hypothetical protein.;Transcript_evidence=AK063740 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-120-F07;Expression=AK063740;TENOR=Os01t0590300-01;KEGG=Os01t0590300-01
Chr01	irgsp1_rep	five_prime_UTR	23030252	23030370	.	+	.	Parent=Os01t0590300-01
Chr01	irgsp1_rep	CDS	23030371	23030853	.	+	0	Parent=Os01t0590300-01
Chr01	irgsp1_rep	three_prime_UTR	23030854	23031000	.	+	.	Parent=Os01t0590300-01
Chr01	irgsp1_rep	mRNA	23073608	23079716	.	+	.	ID=Os01t0590700-01;Name=Os01t0590700-01;Locus_id=Os01g0590700;Note=Peptidase M41 domain containing protein.;Transcript_evidence=AK069057 (DDBJ%2C Best hit);ORF_evidence=B9EXT7 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: ATP binding (GO:0005524);InterPro=Peptidase M41 (IPR000642);NIAS_FLcDNA=J023004J21;TENOR=Os01t0590700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	23073608	23073842	.	+	.	Parent=Os01t0590700-01
Chr01	irgsp1_rep	CDS	23073843	23073992	.	+	0	Parent=Os01t0590700-01
Chr01	irgsp1_rep	CDS	23076151	23077230	.	+	0	Parent=Os01t0590700-01
Chr01	irgsp1_rep	CDS	23077337	23077398	.	+	0	Parent=Os01t0590700-01
Chr01	irgsp1_rep	CDS	23077648	23077744	.	+	1	Parent=Os01t0590700-01
Chr01	irgsp1_rep	CDS	23077940	23078015	.	+	0	Parent=Os01t0590700-01
Chr01	irgsp1_rep	CDS	23078348	23078464	.	+	2	Parent=Os01t0590700-01
Chr01	irgsp1_rep	CDS	23078590	23078873	.	+	2	Parent=Os01t0590700-01
Chr01	irgsp1_rep	CDS	23078947	23078961	.	+	0	Parent=Os01t0590700-01
Chr01	irgsp1_rep	three_prime_UTR	23078962	23079036	.	+	.	Parent=Os01t0590700-01
Chr01	irgsp1_rep	three_prime_UTR	23079112	23079165	.	+	.	Parent=Os01t0590700-01
Chr01	irgsp1_rep	three_prime_UTR	23079262	23079716	.	+	.	Parent=Os01t0590700-01
Chr01	irgsp1_rep	mRNA	23077679	23079776	.	+	.	ID=Os01t0590700-02;Name=Os01t0590700-02;Locus_id=Os01g0590700;Note=Similar to ATP-dependent zinc metalloprotease FTSH 9%2C chloroplastic/mitochondrial.;Transcript_evidence=AK059215 (DDBJ%2C Best hit);ORF_evidence=A2ZVG7 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: ATP binding (GO:0005524);InterPro=Peptidase M41 (IPR000642);NIAS_FLcDNA=001-024-C07;TENOR=Os01t0590700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	23077679	23077744	.	+	0	Parent=Os01t0590700-02
Chr01	irgsp1_rep	CDS	23077940	23078015	.	+	0	Parent=Os01t0590700-02
Chr01	irgsp1_rep	CDS	23078348	23078464	.	+	2	Parent=Os01t0590700-02
Chr01	irgsp1_rep	CDS	23078590	23078873	.	+	2	Parent=Os01t0590700-02
Chr01	irgsp1_rep	CDS	23078947	23078961	.	+	0	Parent=Os01t0590700-02
Chr01	irgsp1_rep	three_prime_UTR	23078962	23079036	.	+	.	Parent=Os01t0590700-02
Chr01	irgsp1_rep	three_prime_UTR	23079112	23079165	.	+	.	Parent=Os01t0590700-02
Chr01	irgsp1_rep	three_prime_UTR	23079262	23079776	.	+	.	Parent=Os01t0590700-02
Chr01	irgsp1_rep	mRNA	23082349	23084213	.	-	.	ID=Os01t0590800-00;Name=Os01t0590800-00;Locus_id=Os01g0590800;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5ZD30 (UniProt);TENOR=Os01t0590800-00
Chr01	irgsp1_rep	CDS	23083773	23084213	.	-	0	Parent=Os01t0590800-00
Chr01	irgsp1_rep	CDS	23083153	23083275	.	-	0	Parent=Os01t0590800-00
Chr01	irgsp1_rep	CDS	23082349	23082486	.	-	0	Parent=Os01t0590800-00
Chr01	irgsp1_rep	mRNA	23090754	23095161	.	+	.	ID=Os01t0590900-01;Name=Os01t0590900-01;Locus_id=Os01g0590900;Note=Similar to Serine/threonine-protein kinase AFC3.;Transcript_evidence=AK066167 (DDBJ%2C Best hit);ORF_evidence=B6TDZ3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013054D23;TENOR=Os01t0590900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	23090754	23090819	.	+	.	Parent=Os01t0590900-01
Chr01	irgsp1_rep	CDS	23090820	23090903	.	+	0	Parent=Os01t0590900-01
Chr01	irgsp1_rep	CDS	23091005	23091095	.	+	0	Parent=Os01t0590900-01
Chr01	irgsp1_rep	CDS	23091513	23091539	.	+	2	Parent=Os01t0590900-01
Chr01	irgsp1_rep	CDS	23091631	23091784	.	+	2	Parent=Os01t0590900-01
Chr01	irgsp1_rep	CDS	23091864	23091912	.	+	1	Parent=Os01t0590900-01
Chr01	irgsp1_rep	CDS	23092246	23092360	.	+	0	Parent=Os01t0590900-01
Chr01	irgsp1_rep	CDS	23092481	23092572	.	+	2	Parent=Os01t0590900-01
Chr01	irgsp1_rep	CDS	23092668	23092815	.	+	0	Parent=Os01t0590900-01
Chr01	irgsp1_rep	CDS	23093245	23093309	.	+	2	Parent=Os01t0590900-01
Chr01	irgsp1_rep	CDS	23093384	23093481	.	+	0	Parent=Os01t0590900-01
Chr01	irgsp1_rep	CDS	23094045	23094150	.	+	1	Parent=Os01t0590900-01
Chr01	irgsp1_rep	CDS	23094689	23094826	.	+	0	Parent=Os01t0590900-01
Chr01	irgsp1_rep	three_prime_UTR	23094827	23095161	.	+	.	Parent=Os01t0590900-01
Chr01	irgsp1_rep	mRNA	23097292	23106301	.	+	.	ID=Os01t0591000-01;Name=Os01t0591000-01;Locus_id=Os01g0591000;CGSNL Gene Symbol=ALDH1A;CGSNL Gene Name=ALDEHYDE DEHYDROGENASE 1A;Oryzabase Gene Symbol Synonym(s)=ALDH1a%2C Aldh1a%2C OsALDH1a%2C OsALDH2C4%2C ALDH2C4;Oryzabase Gene Name Synonym(s)=aldehyde dehydrogenase 1a%2C aldehyde dehydrogenase 2C4;Note=Aldehyde/histidinol dehydrogenase domain containing protein.;Transcript_evidence=AK119571 (DDBJ%2C Best hit);ORF_evidence=A4UUE0 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620);InterPro=Aldehyde dehydrogenase domain (IPR015590),Aldehyde dehydrogenase%2C conserved site (IPR016160),Aldehyde/histidinol dehydrogenase (IPR016161),Aldehyde dehydrogenase%2C N-terminal (IPR016162),Aldehyde dehydrogenase%2C C-terminal (IPR016163);NIAS_FLcDNA=002-117-A10;Oryzabase=20179;Expression=AK119571;TENOR=Os01t0591000-01;KEGG=Os01t0591000-01 (EC:1.2.1.3)
Chr01	irgsp1_rep	five_prime_UTR	23097292	23097407	.	+	.	Parent=Os01t0591000-01
Chr01	irgsp1_rep	CDS	23097408	23097513	.	+	0	Parent=Os01t0591000-01
Chr01	irgsp1_rep	CDS	23103831	23103973	.	+	2	Parent=Os01t0591000-01
Chr01	irgsp1_rep	CDS	23104135	23104608	.	+	0	Parent=Os01t0591000-01
Chr01	irgsp1_rep	CDS	23104839	23105012	.	+	0	Parent=Os01t0591000-01
Chr01	irgsp1_rep	CDS	23105119	23105256	.	+	0	Parent=Os01t0591000-01
Chr01	irgsp1_rep	CDS	23105378	23105513	.	+	0	Parent=Os01t0591000-01
Chr01	irgsp1_rep	CDS	23105638	23105701	.	+	2	Parent=Os01t0591000-01
Chr01	irgsp1_rep	CDS	23105799	23106072	.	+	1	Parent=Os01t0591000-01
Chr01	irgsp1_rep	three_prime_UTR	23106073	23106301	.	+	.	Parent=Os01t0591000-01
Chr01	irgsp1_rep	mRNA	23097337	23106221	.	+	.	ID=Os01t0591000-02;Name=Os01t0591000-02;Locus_id=Os01g0591000;CGSNL Gene Symbol=ALDH1A;CGSNL Gene Name=ALDEHYDE DEHYDROGENASE 1A;Oryzabase Gene Symbol Synonym(s)=ALDH1a%2C Aldh1a%2C OsALDH1a%2C OsALDH2C4%2C ALDH2C4;Oryzabase Gene Name Synonym(s)=aldehyde dehydrogenase 1a%2C aldehyde dehydrogenase 2C4;Note=Aldehyde/histidinol dehydrogenase domain containing protein.;Transcript_evidence=AK105638 (DDBJ%2C Best hit),AK121462 (DDBJ%2C Best hit);ORF_evidence=A4UUE0 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620);InterPro=Aldehyde dehydrogenase domain (IPR015590),Aldehyde dehydrogenase%2C conserved site (IPR016160),Aldehyde/histidinol dehydrogenase (IPR016161),Aldehyde dehydrogenase%2C N-terminal (IPR016162),Aldehyde dehydrogenase%2C C-terminal (IPR016163);NIAS_FLcDNA=001-200-E03,J023144F17;Oryzabase=20179;Expression=AK105638;TENOR=Os01t0591000-02;KEGG=Os01t0591000-02 (EC:1.2.1.3)
Chr01	irgsp1_rep	five_prime_UTR	23097337	23097407	.	+	.	Parent=Os01t0591000-02
Chr01	irgsp1_rep	CDS	23097408	23097513	.	+	0	Parent=Os01t0591000-02
Chr01	irgsp1_rep	CDS	23103831	23103973	.	+	2	Parent=Os01t0591000-02
Chr01	irgsp1_rep	CDS	23104135	23104608	.	+	0	Parent=Os01t0591000-02
Chr01	irgsp1_rep	CDS	23104839	23105012	.	+	0	Parent=Os01t0591000-02
Chr01	irgsp1_rep	CDS	23105119	23105256	.	+	0	Parent=Os01t0591000-02
Chr01	irgsp1_rep	CDS	23105378	23105513	.	+	0	Parent=Os01t0591000-02
Chr01	irgsp1_rep	CDS	23105638	23105701	.	+	2	Parent=Os01t0591000-02
Chr01	irgsp1_rep	CDS	23105799	23106072	.	+	1	Parent=Os01t0591000-02
Chr01	irgsp1_rep	three_prime_UTR	23106073	23106221	.	+	.	Parent=Os01t0591000-02
Chr01	irgsp1_rep	mRNA	23105376	23106077	.	-	.	ID=Os01t0591250-00;Name=Os01t0591250-00;Locus_id=Os01g0591250;Note=Hypothetical protein.;Transcript_evidence=EU970913 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0591250-00
Chr01	irgsp1_rep	five_prime_UTR	23105874	23106077	.	-	.	Parent=Os01t0591250-00
Chr01	irgsp1_rep	CDS	23105553	23105873	.	-	0	Parent=Os01t0591250-00
Chr01	irgsp1_rep	three_prime_UTR	23105376	23105552	.	-	.	Parent=Os01t0591250-00
Chr01	irgsp1_rep	mRNA	23113647	23119704	.	+	.	ID=Os01t0591300-01;Name=Os01t0591300-01;Locus_id=Os01g0591300;CGSNL Gene Symbol=ALDH2C1;CGSNL Gene Name=ALDEHYDE DEHYDROGENASE 2C1;Oryzabase Gene Symbol Synonym(s)=OsALDH2C1;Oryzabase Gene Name Synonym(s)=Aldehyde dehydrogenase 2C1;Note=Similar to Cytosolic aldehyde dehydrogenase RF2D.;Transcript_evidence=AK101427 (DDBJ%2C Best hit);ORF_evidence=NP_001105047.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620);InterPro=Aldehyde dehydrogenase domain (IPR015590),Aldehyde dehydrogenase%2C conserved site (IPR016160),Aldehyde/histidinol dehydrogenase (IPR016161),Aldehyde dehydrogenase%2C N-terminal (IPR016162),Aldehyde dehydrogenase%2C C-terminal (IPR016163);NIAS_FLcDNA=J033038G01;Oryzabase=22110;Expression=AK101427;TENOR=Os01t0591300-01;KEGG=Os01t0591300-01 (EC:1.2.1.3)
Chr01	irgsp1_rep	five_prime_UTR	23113647	23113808	.	+	.	Parent=Os01t0591300-01
Chr01	irgsp1_rep	CDS	23113809	23113929	.	+	0	Parent=Os01t0591300-01
Chr01	irgsp1_rep	CDS	23117252	23117394	.	+	2	Parent=Os01t0591300-01
Chr01	irgsp1_rep	CDS	23117515	23117898	.	+	0	Parent=Os01t0591300-01
Chr01	irgsp1_rep	CDS	23118019	23118108	.	+	0	Parent=Os01t0591300-01
Chr01	irgsp1_rep	CDS	23118199	23118372	.	+	0	Parent=Os01t0591300-01
Chr01	irgsp1_rep	CDS	23118497	23118634	.	+	0	Parent=Os01t0591300-01
Chr01	irgsp1_rep	CDS	23118773	23118910	.	+	0	Parent=Os01t0591300-01
Chr01	irgsp1_rep	CDS	23118983	23119044	.	+	0	Parent=Os01t0591300-01
Chr01	irgsp1_rep	CDS	23119157	23119430	.	+	1	Parent=Os01t0591300-01
Chr01	irgsp1_rep	three_prime_UTR	23119431	23119704	.	+	.	Parent=Os01t0591300-01
Chr01	irgsp1_rep	mRNA	23118738	23120516	.	+	.	ID=Os01t0591300-02;Name=Os01t0591300-02;Locus_id=Os01g0591300;CGSNL Gene Symbol=ALDH2C1;CGSNL Gene Name=ALDEHYDE DEHYDROGENASE 2C1;Oryzabase Gene Symbol Synonym(s)=OsALDH2C1;Oryzabase Gene Name Synonym(s)=Aldehyde dehydrogenase 2C1;Note=Similar to aldehyde dehydrogenase5.;Transcript_evidence=AK240813 (DDBJ%2C Best hit);ORF_evidence=NP_001105047.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620);InterPro=Aldehyde dehydrogenase domain (IPR015590),Aldehyde/histidinol dehydrogenase (IPR016161),Aldehyde dehydrogenase%2C C-terminal (IPR016163);NIAS_FLcDNA=J065008C04;Oryzabase=22110;TENOR=Os01t0591300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	23118738	23119133	.	+	.	Parent=Os01t0591300-02
Chr01	irgsp1_rep	CDS	23119134	23119430	.	+	0	Parent=Os01t0591300-02
Chr01	irgsp1_rep	three_prime_UTR	23119431	23120516	.	+	.	Parent=Os01t0591300-02
Chr01	irgsp1_rep	mRNA	23112461	23120522	.	-	.	ID=Os01t0591500-00;Name=Os01t0591500-00;Locus_id=Os01g0591500;Note=Non-protein coding transcript.;Transcript_evidence=CU861697 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os01t0591500-00
Chr01	irgsp1_rep	exon	23120446	23120522	.	-	.	Parent=Os01t0591500-00
Chr01	irgsp1_rep	exon	23112461	23112881	.	-	.	Parent=Os01t0591500-00
Chr01	irgsp1_rep	mRNA	23167795	23168478	.	-	.	ID=Os01t0592500-01;Name=Os01t0592500-01;Locus_id=Os01g0592500;CGSNL Gene Symbol=AGP15;CGSNL Gene Name=ARABINOGALACTAN PROTEIN 15;Oryzabase Gene Symbol Synonym(s)=OsAGP15;Oryzabase Gene Name Synonym(s)=Arabinogalactan protein 15;Note=Protein of unknown function DUF1070 family protein.;Transcript_evidence=AK111253 (DDBJ%2C Best hit);ORF_evidence=B8AB42 (UniProt);InterPro=Arabinogalactan peptide%2C AGP (IPR009424);NIAS_FLcDNA=002-180-E03;Oryzabase=11308;Expression=AK111253;TENOR=Os01t0592500-01;KEGG=Os01t0592500-01
Chr01	irgsp1_rep	five_prime_UTR	23168326	23168478	.	-	.	Parent=Os01t0592500-01
Chr01	irgsp1_rep	CDS	23168128	23168325	.	-	0	Parent=Os01t0592500-01
Chr01	irgsp1_rep	three_prime_UTR	23167795	23168127	.	-	.	Parent=Os01t0592500-01
Chr01	irgsp1_rep	mRNA	23174817	23187023	.	-	.	ID=Os01t0592900-01;Name=Os01t0592900-01;Locus_id=Os01g0592900;Note=Similar to regulator of telomere elongation helicase 1.;Transcript_evidence=AK102072 (DDBJ%2C Best hit);ORF_evidence=NP_001152397.1 (RefSeq);NIAS_FLcDNA=J033082G14;TENOR=Os01t0592900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	23186903	23187023	.	-	.	Parent=Os01t0592900-01
Chr01	irgsp1_rep	CDS	23186690	23186902	.	-	0	Parent=Os01t0592900-01
Chr01	irgsp1_rep	CDS	23186458	23186571	.	-	0	Parent=Os01t0592900-01
Chr01	irgsp1_rep	three_prime_UTR	23186388	23186457	.	-	.	Parent=Os01t0592900-01
Chr01	irgsp1_rep	three_prime_UTR	23186082	23186221	.	-	.	Parent=Os01t0592900-01
Chr01	irgsp1_rep	three_prime_UTR	23185382	23185463	.	-	.	Parent=Os01t0592900-01
Chr01	irgsp1_rep	three_prime_UTR	23185131	23185281	.	-	.	Parent=Os01t0592900-01
Chr01	irgsp1_rep	three_prime_UTR	23184771	23184933	.	-	.	Parent=Os01t0592900-01
Chr01	irgsp1_rep	three_prime_UTR	23184458	23184634	.	-	.	Parent=Os01t0592900-01
Chr01	irgsp1_rep	three_prime_UTR	23184130	23184254	.	-	.	Parent=Os01t0592900-01
Chr01	irgsp1_rep	three_prime_UTR	23183544	23183595	.	-	.	Parent=Os01t0592900-01
Chr01	irgsp1_rep	three_prime_UTR	23182835	23182976	.	-	.	Parent=Os01t0592900-01
Chr01	irgsp1_rep	three_prime_UTR	23182322	23182476	.	-	.	Parent=Os01t0592900-01
Chr01	irgsp1_rep	three_prime_UTR	23182139	23182230	.	-	.	Parent=Os01t0592900-01
Chr01	irgsp1_rep	three_prime_UTR	23181955	23182062	.	-	.	Parent=Os01t0592900-01
Chr01	irgsp1_rep	three_prime_UTR	23181807	23181875	.	-	.	Parent=Os01t0592900-01
Chr01	irgsp1_rep	three_prime_UTR	23181186	23181272	.	-	.	Parent=Os01t0592900-01
Chr01	irgsp1_rep	three_prime_UTR	23180804	23180863	.	-	.	Parent=Os01t0592900-01
Chr01	irgsp1_rep	three_prime_UTR	23180052	23180167	.	-	.	Parent=Os01t0592900-01
Chr01	irgsp1_rep	three_prime_UTR	23179597	23179654	.	-	.	Parent=Os01t0592900-01
Chr01	irgsp1_rep	three_prime_UTR	23179427	23179526	.	-	.	Parent=Os01t0592900-01
Chr01	irgsp1_rep	three_prime_UTR	23177995	23178050	.	-	.	Parent=Os01t0592900-01
Chr01	irgsp1_rep	three_prime_UTR	23177432	23177911	.	-	.	Parent=Os01t0592900-01
Chr01	irgsp1_rep	three_prime_UTR	23177155	23177300	.	-	.	Parent=Os01t0592900-01
Chr01	irgsp1_rep	three_prime_UTR	23176976	23177073	.	-	.	Parent=Os01t0592900-01
Chr01	irgsp1_rep	three_prime_UTR	23174817	23175316	.	-	.	Parent=Os01t0592900-01
Chr01	irgsp1_rep	mRNA	23174880	23186976	.	-	.	ID=Os01t0592900-02;Name=Os01t0592900-02;Locus_id=Os01g0592900;Note=Similar to regulator of telomere elongation helicase 1.;Transcript_evidence=AK099544 (DDBJ%2C Best hit);ORF_evidence=NP_001152397.1 (RefSeq);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP-dependent DNA helicase activity (GO:0004003),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026),Molecular Function: hydrolase activity%2C acting on acid anhydrides (GO:0016817),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides (GO:0016818);InterPro=Helicase-like%2C DEXD box c2 type (IPR006554),Helicase%2C ATP-dependent%2C c2 type (IPR006555),DEAD2 (IPR010614),DNA helicase (DNA repair)%2C Rad3 type (IPR013020),DEAD-like helicase (IPR014001),Helicase%2C superfamily 1/2%2C ATP-binding domain%2C DinG/Rad3-type (IPR014013);NIAS_FLcDNA=J013032O15;TENOR=Os01t0592900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	23186903	23186976	.	-	.	Parent=Os01t0592900-02
Chr01	irgsp1_rep	CDS	23186801	23186902	.	-	0	Parent=Os01t0592900-02
Chr01	irgsp1_rep	CDS	23186388	23186692	.	-	0	Parent=Os01t0592900-02
Chr01	irgsp1_rep	CDS	23186082	23186221	.	-	1	Parent=Os01t0592900-02
Chr01	irgsp1_rep	CDS	23185382	23185463	.	-	2	Parent=Os01t0592900-02
Chr01	irgsp1_rep	CDS	23185131	23185281	.	-	1	Parent=Os01t0592900-02
Chr01	irgsp1_rep	CDS	23184771	23184933	.	-	0	Parent=Os01t0592900-02
Chr01	irgsp1_rep	CDS	23184458	23184634	.	-	2	Parent=Os01t0592900-02
Chr01	irgsp1_rep	CDS	23184130	23184254	.	-	2	Parent=Os01t0592900-02
Chr01	irgsp1_rep	CDS	23183544	23183595	.	-	0	Parent=Os01t0592900-02
Chr01	irgsp1_rep	CDS	23182835	23182976	.	-	2	Parent=Os01t0592900-02
Chr01	irgsp1_rep	CDS	23182322	23182476	.	-	1	Parent=Os01t0592900-02
Chr01	irgsp1_rep	CDS	23182139	23182230	.	-	2	Parent=Os01t0592900-02
Chr01	irgsp1_rep	CDS	23181955	23182062	.	-	0	Parent=Os01t0592900-02
Chr01	irgsp1_rep	CDS	23181807	23181875	.	-	0	Parent=Os01t0592900-02
Chr01	irgsp1_rep	CDS	23181186	23181272	.	-	0	Parent=Os01t0592900-02
Chr01	irgsp1_rep	CDS	23180804	23180863	.	-	0	Parent=Os01t0592900-02
Chr01	irgsp1_rep	CDS	23180052	23180167	.	-	0	Parent=Os01t0592900-02
Chr01	irgsp1_rep	CDS	23179597	23179654	.	-	1	Parent=Os01t0592900-02
Chr01	irgsp1_rep	CDS	23179427	23179526	.	-	0	Parent=Os01t0592900-02
Chr01	irgsp1_rep	CDS	23177995	23178050	.	-	2	Parent=Os01t0592900-02
Chr01	irgsp1_rep	CDS	23177432	23177911	.	-	0	Parent=Os01t0592900-02
Chr01	irgsp1_rep	CDS	23177155	23177300	.	-	0	Parent=Os01t0592900-02
Chr01	irgsp1_rep	CDS	23176995	23177073	.	-	1	Parent=Os01t0592900-02
Chr01	irgsp1_rep	three_prime_UTR	23176976	23176994	.	-	.	Parent=Os01t0592900-02
Chr01	irgsp1_rep	three_prime_UTR	23174880	23175316	.	-	.	Parent=Os01t0592900-02
Chr01	irgsp1_rep	mRNA	23208157	23213230	.	+	.	ID=Os01t0593000-00;Name=Os01t0593000-00;Locus_id=Os01g0593000;Note=Similar to predicted protein.;Transcript_evidence=EU951465 (DDBJ);ORF_evidence=XP_002880701.1 (RefSeq);TENOR=Os01t0593000-00;KEGG=Os01t0593000-00
Chr01	irgsp1_rep	CDS	23208157	23208336	.	+	0	Parent=Os01t0593000-00
Chr01	irgsp1_rep	CDS	23209899	23210042	.	+	0	Parent=Os01t0593000-00
Chr01	irgsp1_rep	CDS	23210352	23210440	.	+	0	Parent=Os01t0593000-00
Chr01	irgsp1_rep	CDS	23210868	23210950	.	+	1	Parent=Os01t0593000-00
Chr01	irgsp1_rep	CDS	23211061	23211176	.	+	2	Parent=Os01t0593000-00
Chr01	irgsp1_rep	CDS	23211713	23211798	.	+	0	Parent=Os01t0593000-00
Chr01	irgsp1_rep	CDS	23212350	23212449	.	+	1	Parent=Os01t0593000-00
Chr01	irgsp1_rep	CDS	23213159	23213224	.	+	0	Parent=Os01t0593000-00
Chr01	irgsp1_rep	three_prime_UTR	23213225	23213230	.	+	.	Parent=Os01t0593000-00
Chr01	irgsp1_rep	mRNA	23214611	23215961	.	-	.	ID=Os01t0593100-00;Name=Os01t0593100-00;Locus_id=Os01g0593100;Note=Similar to ZCW7.;Transcript_evidence=BT064543 (DDBJ);ORF_evidence=B6TC50 (UniProt);TENOR=Os01t0593100-00;KEGG=Os01t0593100-00
Chr01	irgsp1_rep	CDS	23215831	23215961	.	-	0	Parent=Os01t0593100-00
Chr01	irgsp1_rep	CDS	23214847	23215238	.	-	1	Parent=Os01t0593100-00
Chr01	irgsp1_rep	CDS	23214622	23214758	.	-	2	Parent=Os01t0593100-00
Chr01	irgsp1_rep	three_prime_UTR	23214611	23214621	.	-	.	Parent=Os01t0593100-00
Chr01	irgsp1_rep	mRNA	23224373	23226605	.	+	.	ID=Os01t0593200-01;Name=Os01t0593200-01;Locus_id=Os01g0593200;Note=Protein of unknown function DUF581 family protein.;Transcript_evidence=AK103711 (DDBJ%2C Best hit);ORF_evidence=B6SWF3 (UniProt);InterPro=Protein of unknown function DUF581 (IPR007650);NIAS_FLcDNA=J033137D23;Expression=AK103711;TENOR=Os01t0593200-01;KEGG=Os01t0593200-01
Chr01	irgsp1_rep	five_prime_UTR	23224373	23224406	.	+	.	Parent=Os01t0593200-01
Chr01	irgsp1_rep	five_prime_UTR	23224766	23224822	.	+	.	Parent=Os01t0593200-01
Chr01	irgsp1_rep	five_prime_UTR	23225238	23225262	.	+	.	Parent=Os01t0593200-01
Chr01	irgsp1_rep	CDS	23225263	23225906	.	+	0	Parent=Os01t0593200-01
Chr01	irgsp1_rep	CDS	23226047	23226185	.	+	1	Parent=Os01t0593200-01
Chr01	irgsp1_rep	three_prime_UTR	23226186	23226605	.	+	.	Parent=Os01t0593200-01
Chr01	irgsp1_rep	mRNA	23234892	23237624	.	-	.	ID=Os01t0593500-00;Name=Os01t0593500-00;Locus_id=Os01g0593500;Note=Ribosomal protein L25 family protein.;Transcript_evidence=CT837630 (DDBJ%2C Best hit);ORF_evidence=NP_194093.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735),Molecular Function: 5S rRNA binding (GO:0008097);InterPro=Ribosomal protein L25/Gln-tRNA synthetase%2C anti-codon-binding domain (IPR011035),Ribosomal protein L25%2C short-form (IPR020055),Ribosomal protein L25/Gln-tRNA synthetase%2C beta-barrel domain (IPR020056),Ribosomal protein L25%2C beta domain (IPR020057);TENOR=Os01t0593500-00;KEGG=Os01t0593500-00
Chr01	irgsp1_rep	five_prime_UTR	23237614	23237624	.	-	.	Parent=Os01t0593500-00
Chr01	irgsp1_rep	CDS	23237149	23237613	.	-	0	Parent=Os01t0593500-00
Chr01	irgsp1_rep	CDS	23235992	23236121	.	-	0	Parent=Os01t0593500-00
Chr01	irgsp1_rep	CDS	23235216	23235436	.	-	2	Parent=Os01t0593500-00
Chr01	irgsp1_rep	three_prime_UTR	23234892	23235215	.	-	.	Parent=Os01t0593500-00
Chr01	irgsp1_rep	mRNA	23239918	23243992	.	+	.	ID=Os01t0593600-01;Name=Os01t0593600-01;Locus_id=Os01g0593600;Note=Similar to Protein SYS1.;Transcript_evidence=AK069058 (DDBJ%2C Best hit);ORF_evidence=B4FDL6 (UniProt);InterPro=Integral membrane protein SYS1-related (IPR019185);NIAS_FLcDNA=J023004I01;TENOR=Os01t0593600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	23239918	23240029	.	+	.	Parent=Os01t0593600-01
Chr01	irgsp1_rep	CDS	23240030	23240253	.	+	0	Parent=Os01t0593600-01
Chr01	irgsp1_rep	CDS	23241173	23241399	.	+	1	Parent=Os01t0593600-01
Chr01	irgsp1_rep	CDS	23243161	23243168	.	+	2	Parent=Os01t0593600-01
Chr01	irgsp1_rep	three_prime_UTR	23243169	23243992	.	+	.	Parent=Os01t0593600-01
Chr01	irgsp1_rep	mRNA	23240010	23243436	.	-	.	ID=Os01t0593650-00;Name=Os01t0593650-00;Locus_id=Os01g0593650;Note=Non-protein coding transcript.;Transcript_evidence=BT019245 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0593650-00
Chr01	irgsp1_rep	exon	23243175	23243436	.	-	.	Parent=Os01t0593650-00
Chr01	irgsp1_rep	exon	23241149	23241414	.	-	.	Parent=Os01t0593650-00
Chr01	irgsp1_rep	exon	23240010	23240229	.	-	.	Parent=Os01t0593650-00
Chr01	irgsp1_rep	mRNA	23247278	23250623	.	+	.	ID=Os01t0593700-01;Name=Os01t0593700-01;Locus_id=Os01g0593700;CGSNL Gene Symbol=SULTR3%3B5;CGSNL Gene Name=SULPHATE TRANSPORTER 3%3B5;Oryzabase Gene Symbol Synonym(s)=OsSultr3%3B5%2C OsSul3%3B5;Oryzabase Gene Name Synonym(s)=sulphate transporter 3%3B5;Note=Sulphate transporter domain containing protein.;Transcript_evidence=AK288065 (DDBJ%2C Best hit);ORF_evidence=NP_568377.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: sulfate transport (GO:0008272),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: secondary active sulfate transmembrane transporter activity (GO:0008271);InterPro=Sulphate anion transporter (IPR001902),Sulphate transporter/antisigma-factor antagonist STAS (IPR002645),Sulphate transporter (IPR011547);NIAS_FLcDNA=J075157D05;Oryzabase=9324;TENOR=Os01t0593700-01;KEGG=Os01t0593700-01
Chr01	irgsp1_rep	five_prime_UTR	23247278	23247395	.	+	.	Parent=Os01t0593700-01
Chr01	irgsp1_rep	CDS	23247396	23247744	.	+	0	Parent=Os01t0593700-01
Chr01	irgsp1_rep	CDS	23247841	23248220	.	+	2	Parent=Os01t0593700-01
Chr01	irgsp1_rep	CDS	23248755	23248820	.	+	0	Parent=Os01t0593700-01
Chr01	irgsp1_rep	CDS	23248912	23249025	.	+	0	Parent=Os01t0593700-01
Chr01	irgsp1_rep	CDS	23249115	23249231	.	+	0	Parent=Os01t0593700-01
Chr01	irgsp1_rep	CDS	23249333	23249459	.	+	0	Parent=Os01t0593700-01
Chr01	irgsp1_rep	CDS	23249549	23250375	.	+	2	Parent=Os01t0593700-01
Chr01	irgsp1_rep	three_prime_UTR	23250376	23250623	.	+	.	Parent=Os01t0593700-01
Chr01	irgsp1_rep	mRNA	23247309	23250372	.	-	.	ID=Os01t0593900-00;Name=Os01t0593900-00;Locus_id=Os01g0593900;Note=Hypothetical protein.;Transcript_evidence=tplb0050b20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0593900-00
Chr01	irgsp1_rep	five_prime_UTR	23249578	23250372	.	-	.	Parent=Os01t0593900-00
Chr01	irgsp1_rep	five_prime_UTR	23249332	23249485	.	-	.	Parent=Os01t0593900-00
Chr01	irgsp1_rep	five_prime_UTR	23249123	23249230	.	-	.	Parent=Os01t0593900-00
Chr01	irgsp1_rep	five_prime_UTR	23249019	23249032	.	-	.	Parent=Os01t0593900-00
Chr01	irgsp1_rep	CDS	23248919	23249018	.	-	0	Parent=Os01t0593900-00
Chr01	irgsp1_rep	CDS	23248772	23248830	.	-	2	Parent=Os01t0593900-00
Chr01	irgsp1_rep	CDS	23247839	23248235	.	-	0	Parent=Os01t0593900-00
Chr01	irgsp1_rep	CDS	23247741	23247742	.	-	2	Parent=Os01t0593900-00
Chr01	irgsp1_rep	three_prime_UTR	23247309	23247740	.	-	.	Parent=Os01t0593900-00
Chr01	irgsp1_rep	mRNA	23285238	23287222	.	+	.	ID=Os01t0594300-01;Name=Os01t0594300-01;Locus_id=Os01g0594300;Oryzabase Gene Name Synonym(s)=Extensin family protein;Note=Similar to leucine-rich repeat family protein / extensin family protein.;Transcript_evidence=AK105670 (DDBJ%2C Best hit);ORF_evidence=NP_001150408.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=001-201-A04;Oryzabase=21947;Expression=AK105670;TENOR=Os01t0594300-01;KEGG=Os01t0594300-01
Chr01	irgsp1_rep	five_prime_UTR	23285238	23285296	.	+	.	Parent=Os01t0594300-01
Chr01	irgsp1_rep	CDS	23285297	23287009	.	+	0	Parent=Os01t0594300-01
Chr01	irgsp1_rep	three_prime_UTR	23287010	23287222	.	+	.	Parent=Os01t0594300-01
Chr01	irgsp1_rep	mRNA	23285241	23287336	.	+	.	ID=Os01t0594300-02;Name=Os01t0594300-02;Locus_id=Os01g0594300;Oryzabase Gene Name Synonym(s)=Extensin family protein;Note=Pistil-specific extensin-like protein family protein.;Transcript_evidence=AK105266 (DDBJ%2C Best hit);ORF_evidence=NP_001150408.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=001-115-D06;Oryzabase=21947;Expression=AK105266;TENOR=Os01t0594300-02;KEGG=Os01t0594300-02
Chr01	irgsp1_rep	five_prime_UTR	23285241	23285296	.	+	.	Parent=Os01t0594300-02
Chr01	irgsp1_rep	CDS	23285297	23286486	.	+	0	Parent=Os01t0594300-02
Chr01	irgsp1_rep	CDS	23286544	23287009	.	+	1	Parent=Os01t0594300-02
Chr01	irgsp1_rep	three_prime_UTR	23287010	23287336	.	+	.	Parent=Os01t0594300-02
Chr01	irgsp1_rep	mRNA	23291659	23292661	.	-	.	ID=Os01t0594500-01;Name=Os01t0594500-01;Locus_id=Os01g0594500;CGSNL Gene Symbol=THI18;CGSNL Gene Name=THIONIN 18;Oryzabase Gene Symbol Synonym(s)=OsTHI18%2C OsTHION18%2C THION18;Oryzabase Gene Name Synonym(s)=Thionin 18;Note=Conserved hypothetical protein.;Transcript_evidence=AK069454 (DDBJ%2C Best hit);ORF_evidence=B8AB51 (UniProt);NIAS_FLcDNA=J023019C07;Oryzabase=23349;Expression=AK069454;TENOR=Os01t0594500-01;KEGG=Os01t0594500-01
Chr01	irgsp1_rep	five_prime_UTR	23292623	23292661	.	-	.	Parent=Os01t0594500-01
Chr01	irgsp1_rep	CDS	23292337	23292622	.	-	0	Parent=Os01t0594500-01
Chr01	irgsp1_rep	CDS	23291967	23292259	.	-	2	Parent=Os01t0594500-01
Chr01	irgsp1_rep	three_prime_UTR	23291659	23291966	.	-	.	Parent=Os01t0594500-01
Chr01	irgsp1_rep	mRNA	23295513	23298010	.	+	.	ID=Os01t0594600-01;Name=Os01t0594600-01;Locus_id=Os01g0594600;Note=Similar to cDNA clone:J013022N21%2C full insert sequence.;Transcript_evidence=AK288638 (DDBJ%2C Best hit);ORF_evidence=B7EAX3 (UniProt);NIAS_FLcDNA=J090055N09;TENOR=Os01t0594600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	23295513	23295550	.	+	.	Parent=Os01t0594600-01
Chr01	irgsp1_rep	CDS	23295551	23295706	.	+	0	Parent=Os01t0594600-01
Chr01	irgsp1_rep	three_prime_UTR	23295707	23298010	.	+	.	Parent=Os01t0594600-01
Chr01	irgsp1_rep	mRNA	23295182	23301387	.	+	.	ID=Os01t0594650-00;Name=Os01t0594650-00;Locus_id=Os01g0594650;Note=Ribosome maturation factor RimP domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8AB52 (UniProt);InterPro=Ribosome maturation factor RimP (IPR003728);TENOR=Os01t0594650-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	23295182	23295226	.	+	0	Parent=Os01t0594650-00
Chr01	irgsp1_rep	CDS	23301109	23301387	.	+	0	Parent=Os01t0594650-00
Chr01	irgsp1_rep	mRNA	23301874	23306377	.	-	.	ID=Os01t0594800-00;Name=Os01t0594800-00;Locus_id=Os01g0594800;Note=Similar to D-amino acid oxidase.;Transcript_evidence=FP096999 (DDBJ);ORF_evidence=A0PFJ3 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FAD dependent oxidoreductase (IPR006076);TENOR=Os01t0594800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	23305942	23306377	.	-	0	Parent=Os01t0594800-00
Chr01	irgsp1_rep	CDS	23302446	23302819	.	-	2	Parent=Os01t0594800-00
Chr01	irgsp1_rep	three_prime_UTR	23302351	23302445	.	-	.	Parent=Os01t0594800-00
Chr01	irgsp1_rep	three_prime_UTR	23301874	23302251	.	-	.	Parent=Os01t0594800-00
Chr01	irgsp1_rep	mRNA	23311205	23312581	.	-	.	ID=Os01t0594900-01;Name=Os01t0594900-01;Locus_id=Os01g0594900;CGSNL Gene Symbol=THI27;CGSNL Gene Name=THIONIN 27;Oryzabase Gene Symbol Synonym(s)=OsTHI27%2C OsTHION27%2C THION27;Oryzabase Gene Name Synonym(s)=Thionin 27;Note=Conserved hypothetical protein.;Transcript_evidence=AK070921 (DDBJ%2C Best hit);ORF_evidence=A2WS36 (UniProt);NIAS_FLcDNA=J023074J04;Oryzabase=23355;Expression=AK070921;TENOR=Os01t0594900-01;KEGG=Os01t0594900-01
Chr01	irgsp1_rep	five_prime_UTR	23312537	23312581	.	-	.	Parent=Os01t0594900-01
Chr01	irgsp1_rep	CDS	23312432	23312536	.	-	0	Parent=Os01t0594900-01
Chr01	irgsp1_rep	CDS	23312038	23312341	.	-	0	Parent=Os01t0594900-01
Chr01	irgsp1_rep	CDS	23311415	23311764	.	-	2	Parent=Os01t0594900-01
Chr01	irgsp1_rep	three_prime_UTR	23311205	23311414	.	-	.	Parent=Os01t0594900-01
Chr01	irgsp1_rep	mRNA	23313213	23313928	.	-	.	ID=Os01t0595001-00;Name=Os01t0595001-00;Locus_id=Os01g0595001;CGSNL Gene Symbol=THI19;CGSNL Gene Name=THIONIN 19;Oryzabase Gene Symbol Synonym(s)=OsTHI19%2C OsTHION19%2C THION19;Oryzabase Gene Name Synonym(s)=Thionin 19;Note=Conserved hypothetical protein.;Transcript_evidence=CT834801 (DDBJ%2C Best hit);ORF_evidence=Q8L4R5 (UniProt);Oryzabase=23350;TENOR=Os01t0595001-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	23313869	23313928	.	-	.	Parent=Os01t0595001-00
Chr01	irgsp1_rep	CDS	23313446	23313868	.	-	0	Parent=Os01t0595001-00
Chr01	irgsp1_rep	three_prime_UTR	23313213	23313445	.	-	.	Parent=Os01t0595001-00
Chr01	irgsp1_rep	mRNA	23316218	23322871	.	+	.	ID=Os01t0595100-01;Name=Os01t0595100-01;Locus_id=Os01g0595100;Note=Hypothetical conserved gene.;Transcript_evidence=AK243574 (DDBJ%2C Best hit);ORF_evidence=B9EXV3 (UniProt);InterPro=CASC3/Barentsz eIF4AIII binding (IPR018545);NIAS_FLcDNA=J100082C16;TENOR=Os01t0595100-01;KEGG=Os01t0595100-01
Chr01	irgsp1_rep	five_prime_UTR	23316218	23316307	.	+	.	Parent=Os01t0595100-01
Chr01	irgsp1_rep	CDS	23316308	23316876	.	+	0	Parent=Os01t0595100-01
Chr01	irgsp1_rep	CDS	23318541	23318640	.	+	1	Parent=Os01t0595100-01
Chr01	irgsp1_rep	CDS	23318721	23318944	.	+	0	Parent=Os01t0595100-01
Chr01	irgsp1_rep	CDS	23319101	23319930	.	+	1	Parent=Os01t0595100-01
Chr01	irgsp1_rep	CDS	23320050	23320164	.	+	2	Parent=Os01t0595100-01
Chr01	irgsp1_rep	CDS	23320675	23320794	.	+	1	Parent=Os01t0595100-01
Chr01	irgsp1_rep	CDS	23321299	23321339	.	+	1	Parent=Os01t0595100-01
Chr01	irgsp1_rep	CDS	23321435	23321478	.	+	2	Parent=Os01t0595100-01
Chr01	irgsp1_rep	CDS	23321571	23321600	.	+	0	Parent=Os01t0595100-01
Chr01	irgsp1_rep	three_prime_UTR	23321601	23321642	.	+	.	Parent=Os01t0595100-01
Chr01	irgsp1_rep	three_prime_UTR	23321725	23321803	.	+	.	Parent=Os01t0595100-01
Chr01	irgsp1_rep	three_prime_UTR	23322428	23322499	.	+	.	Parent=Os01t0595100-01
Chr01	irgsp1_rep	three_prime_UTR	23322587	23322871	.	+	.	Parent=Os01t0595100-01
Chr01	irgsp1_rep	mRNA	23324460	23325125	.	+	.	ID=Os01t0595201-00;Name=Os01t0595201-00;Locus_id=Os01g0595201;CGSNL Gene Symbol=HMP4;CGSNL Gene Name=HEAVY METAL-ASSOCIATED PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OsHMP4%2C OsHMP04;Oryzabase Gene Name Synonym(s)=Heavy metal-associated protein 4;Note=Similar to metal ion binding protein.;Transcript_evidence=EU959130 (DDBJ);ORF_evidence=B6T2B5 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);Oryzabase=23530;TENOR=Os01t0595201-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	23324460	23324464	.	+	.	Parent=Os01t0595201-00
Chr01	irgsp1_rep	CDS	23324465	23324656	.	+	0	Parent=Os01t0595201-00
Chr01	irgsp1_rep	CDS	23324823	23324898	.	+	0	Parent=Os01t0595201-00
Chr01	irgsp1_rep	CDS	23324998	23325125	.	+	2	Parent=Os01t0595201-00
Chr01	irgsp1_rep	mRNA	23329802	23331517	.	+	.	ID=Os01t0595300-01;Name=Os01t0595300-01;Locus_id=Os01g0595300;Note=MULE transposase%2C conserved domain domain containing protein.;Transcript_evidence=AK071288 (DDBJ%2C Best hit);ORF_evidence=D0VLU9 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Transposase%2C MuDR%2C plant (IPR004332),Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);NIAS_FLcDNA=J023087J07;Expression=AK071288;TENOR=Os01t0595300-01;KEGG=Os01t0595300-01
Chr01	irgsp1_rep	five_prime_UTR	23329802	23329803	.	+	.	Parent=Os01t0595300-01
Chr01	irgsp1_rep	CDS	23329804	23331486	.	+	0	Parent=Os01t0595300-01
Chr01	irgsp1_rep	three_prime_UTR	23331487	23331517	.	+	.	Parent=Os01t0595300-01
Chr01	irgsp1_rep	mRNA	23333024	23337221	.	+	.	ID=Os01t0595400-01;Name=Os01t0595400-01;Locus_id=Os01g0595400;Note=Protein of unknown function DUF538 family protein.;Transcript_evidence=AK068184 (DDBJ%2C Best hit),AK069334 (DDBJ%2C Best hit);ORF_evidence=A2WS41 (UniProt);InterPro=Protein of unknown function DUF538 (IPR007493);NIAS_FLcDNA=J013133H08,J023010O20;TENOR=Os01t0595400-01
Chr01	irgsp1_rep	five_prime_UTR	23333024	23333093	.	+	.	Parent=Os01t0595400-01
Chr01	irgsp1_rep	CDS	23333094	23333576	.	+	0	Parent=Os01t0595400-01
Chr01	irgsp1_rep	three_prime_UTR	23333577	23333583	.	+	.	Parent=Os01t0595400-01
Chr01	irgsp1_rep	three_prime_UTR	23336896	23337221	.	+	.	Parent=Os01t0595400-01
Chr01	irgsp1_rep	mRNA	23343306	23345362	.	+	.	ID=Os01t0595600-01;Name=Os01t0595600-01;Locus_id=Os01g0595600;Note=Alpha/beta hydrolase fold-1 domain containing protein.;Transcript_evidence=AK066814 (DDBJ%2C Best hit);ORF_evidence=A2WS43 (UniProt);NIAS_FLcDNA=J013082F17;Expression=AK066814;TENOR=Os01t0595600-01;KEGG=Os01t0595600-01
Chr01	irgsp1_rep	five_prime_UTR	23343306	23343364	.	+	.	Parent=Os01t0595600-01
Chr01	irgsp1_rep	CDS	23343365	23343487	.	+	0	Parent=Os01t0595600-01
Chr01	irgsp1_rep	CDS	23343575	23343816	.	+	0	Parent=Os01t0595600-01
Chr01	irgsp1_rep	CDS	23344654	23345197	.	+	1	Parent=Os01t0595600-01
Chr01	irgsp1_rep	three_prime_UTR	23345198	23345362	.	+	.	Parent=Os01t0595600-01
Chr01	irgsp1_rep	mRNA	23347762	23353061	.	-	.	ID=Os01t0595725-00;Name=Os01t0595725-00;Locus_id=Os01g0595725;Note=Hypothetical protein.;Transcript_evidence=tplb0059j12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0595725-00
Chr01	irgsp1_rep	five_prime_UTR	23352956	23353061	.	-	.	Parent=Os01t0595725-00
Chr01	irgsp1_rep	CDS	23352935	23352955	.	-	0	Parent=Os01t0595725-00
Chr01	irgsp1_rep	CDS	23352164	23352835	.	-	0	Parent=Os01t0595725-00
Chr01	irgsp1_rep	CDS	23347762	23348079	.	-	0	Parent=Os01t0595725-00
Chr01	irgsp1_rep	mRNA	23353537	23353963	.	+	.	ID=Os01t0595800-00;Name=Os01t0595800-00;Locus_id=Os01g0595800;Oryzabase Gene Symbol Synonym(s)=OsFbox022%2C OsFbox22%2C Os_F0366;Oryzabase Gene Name Synonym(s)=F-box protein 22;Note=FBD domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2WS45 (UniProt);InterPro=FBD (IPR013596);Oryzabase=16824;TENOR=Os01t0595800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	23353537	23353792	.	+	0	Parent=Os01t0595800-00
Chr01	irgsp1_rep	CDS	23353821	23353963	.	+	2	Parent=Os01t0595800-00
Chr01	irgsp1_rep	mRNA	23353985	23354232	.	+	.	ID=Os01t0595850-01;Name=Os01t0595850-01;Locus_id=Os01g0595850;Note=Non-protein coding transcript.;Transcript_evidence=AK242406 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080071E17;TENOR=Os01t0595850-01
Chr01	irgsp1_rep	exon	23353985	23354232	.	+	.	Parent=Os01t0595850-01
Chr01	irgsp1_rep	mRNA	23357007	23359952	.	+	.	ID=Os01t0595900-01;Name=Os01t0595900-01;Locus_id=Os01g0595900;Oryzabase Gene Symbol Synonym(s)=OsFbox023%2C OsFbox23%2C Os_F0211%2C OsSTA20;Oryzabase Gene Name Synonym(s)=F-box protein 23;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK100625 (DDBJ%2C Best hit);ORF_evidence=B6SL02 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),FBD-like (IPR006566),FBD (IPR013596),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023108J06;Oryzabase=16825;Expression=AK100625;TENOR=Os01t0595900-01;KEGG=Os01t0595900-01
Chr01	irgsp1_rep	five_prime_UTR	23357007	23357063	.	+	.	Parent=Os01t0595900-01
Chr01	irgsp1_rep	CDS	23357064	23358182	.	+	0	Parent=Os01t0595900-01
Chr01	irgsp1_rep	CDS	23358320	23358463	.	+	0	Parent=Os01t0595900-01
Chr01	irgsp1_rep	CDS	23358573	23358941	.	+	0	Parent=Os01t0595900-01
Chr01	irgsp1_rep	three_prime_UTR	23358942	23359952	.	+	.	Parent=Os01t0595900-01
Chr01	irgsp1_rep	mRNA	23357101	23358961	.	-	.	ID=Os01t0596001-00;Name=Os01t0596001-00;Locus_id=Os01g0596001;Note=Hypothetical protein.;Transcript_evidence=tplb0028o22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0596001-00
Chr01	irgsp1_rep	five_prime_UTR	23358596	23358961	.	-	.	Parent=Os01t0596001-00
Chr01	irgsp1_rep	five_prime_UTR	23358463	23358478	.	-	.	Parent=Os01t0596001-00
Chr01	irgsp1_rep	CDS	23358328	23358462	.	-	0	Parent=Os01t0596001-00
Chr01	irgsp1_rep	CDS	23357101	23358191	.	-	0	Parent=Os01t0596001-00
Chr01	irgsp1_rep	mRNA	23363801	23365877	.	+	.	ID=Os01t0596100-01;Name=Os01t0596100-01;Locus_id=Os01g0596100;Oryzabase Gene Symbol Synonym(s)=OsFbox025%2C OsFbox25%2C Os_F0325;Oryzabase Gene Name Synonym(s)=F-box protein 25;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK107398 (DDBJ%2C Best hit);ORF_evidence=A2WS49 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),FBD-like (IPR006566),FBD (IPR013596),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-127-D07;Oryzabase=18086;Expression=AK107398;TENOR=Os01t0596100-01;KEGG=Os01t0596100-01
Chr01	irgsp1_rep	five_prime_UTR	23363801	23363856	.	+	.	Parent=Os01t0596100-01
Chr01	irgsp1_rep	CDS	23363857	23364891	.	+	0	Parent=Os01t0596100-01
Chr01	irgsp1_rep	CDS	23365001	23365144	.	+	0	Parent=Os01t0596100-01
Chr01	irgsp1_rep	CDS	23365347	23365730	.	+	0	Parent=Os01t0596100-01
Chr01	irgsp1_rep	three_prime_UTR	23365731	23365877	.	+	.	Parent=Os01t0596100-01
Chr01	irgsp1_rep	mRNA	23363828	23365749	.	-	.	ID=Os01t0596201-00;Name=Os01t0596201-00;Locus_id=Os01g0596201;Note=Hypothetical protein.;Transcript_evidence=tplb0028o22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0596201-00
Chr01	irgsp1_rep	five_prime_UTR	23365496	23365749	.	-	.	Parent=Os01t0596201-00
Chr01	irgsp1_rep	CDS	23365328	23365495	.	-	0	Parent=Os01t0596201-00
Chr01	irgsp1_rep	CDS	23364999	23365132	.	-	0	Parent=Os01t0596201-00
Chr01	irgsp1_rep	CDS	23364826	23364889	.	-	1	Parent=Os01t0596201-00
Chr01	irgsp1_rep	three_prime_UTR	23363828	23364825	.	-	.	Parent=Os01t0596201-00
Chr01	irgsp1_rep	mRNA	23376598	23378526	.	+	.	ID=Os01t0596300-01;Name=Os01t0596300-01;Locus_id=Os01g0596300;Oryzabase Gene Symbol Synonym(s)=OsFbox026%2C OsFbox26%2C Os_F0242;Oryzabase Gene Name Synonym(s)=F-box protein 26;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK069151 (DDBJ%2C Best hit);ORF_evidence=A2WS51 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),FBD (IPR013596),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023007D17;Oryzabase=16827;Expression=AK069151;TENOR=Os01t0596300-01;KEGG=Os01t0596300-01
Chr01	irgsp1_rep	five_prime_UTR	23376598	23376647	.	+	.	Parent=Os01t0596300-01
Chr01	irgsp1_rep	CDS	23376648	23377565	.	+	0	Parent=Os01t0596300-01
Chr01	irgsp1_rep	CDS	23377687	23377830	.	+	0	Parent=Os01t0596300-01
Chr01	irgsp1_rep	CDS	23377954	23378316	.	+	0	Parent=Os01t0596300-01
Chr01	irgsp1_rep	three_prime_UTR	23378317	23378526	.	+	.	Parent=Os01t0596300-01
Chr01	irgsp1_rep	mRNA	23376634	23378538	.	-	.	ID=Os01t0596425-00;Name=Os01t0596425-00;Locus_id=Os01g0596425;Note=Hypothetical protein.;Transcript_evidence=tplb0043d05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0596425-00
Chr01	irgsp1_rep	five_prime_UTR	23377943	23378538	.	-	.	Parent=Os01t0596425-00
Chr01	irgsp1_rep	five_prime_UTR	23377693	23377818	.	-	.	Parent=Os01t0596425-00
Chr01	irgsp1_rep	five_prime_UTR	23377317	23377570	.	-	.	Parent=Os01t0596425-00
Chr01	irgsp1_rep	CDS	23376634	23377316	.	-	0	Parent=Os01t0596425-00
Chr01	irgsp1_rep	mRNA	23392737	23393393	.	-	.	ID=Os01t0596500-00;Name=Os01t0596500-00;Locus_id=Os01g0596500;Oryzabase Gene Symbol Synonym(s)=OsFbox027%2C OsFbox27%2C Os_F0595;Oryzabase Gene Name Synonym(s)=F-box protein 27;Note=Conserved hypothetical protein.;Transcript_evidence=FP093532 (DDBJ);ORF_evidence=Q8LQV2 (UniProt);Oryzabase=16828;TENOR=Os01t0596500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	23393228	23393393	.	-	.	Parent=Os01t0596500-00
Chr01	irgsp1_rep	CDS	23392955	23393227	.	-	0	Parent=Os01t0596500-00
Chr01	irgsp1_rep	three_prime_UTR	23392737	23392954	.	-	.	Parent=Os01t0596500-00
Chr01	irgsp1_rep	mRNA	23402666	23405874	.	+	.	ID=Os01t0596600-00;Name=Os01t0596600-00;Locus_id=Os01g0596600;Note=FBD domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5ZB54 (UniProt);InterPro=FBD (IPR013596);TENOR=Os01t0596600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	23402666	23403328	.	+	0	Parent=Os01t0596600-00
Chr01	irgsp1_rep	CDS	23403454	23403546	.	+	0	Parent=Os01t0596600-00
Chr01	irgsp1_rep	CDS	23403709	23403990	.	+	0	Parent=Os01t0596600-00
Chr01	irgsp1_rep	CDS	23405725	23405874	.	+	0	Parent=Os01t0596600-00
Chr01	irgsp1_rep	mRNA	23408623	23411171	.	+	.	ID=Os01t0596700-01;Name=Os01t0596700-01;Locus_id=Os01g0596700;Note=FBD domain containing protein.;Transcript_evidence=AK107371 (DDBJ%2C Best hit);ORF_evidence=A2WS58 (UniProt);InterPro=FBD (IPR013596);NIAS_FLcDNA=002-127-B04;Expression=AK107371;TENOR=Os01t0596700-01;KEGG=Os01t0596700-01
Chr01	irgsp1_rep	five_prime_UTR	23408623	23408697	.	+	.	Parent=Os01t0596700-01
Chr01	irgsp1_rep	CDS	23408698	23409774	.	+	0	Parent=Os01t0596700-01
Chr01	irgsp1_rep	CDS	23410323	23410469	.	+	0	Parent=Os01t0596700-01
Chr01	irgsp1_rep	CDS	23410577	23410945	.	+	0	Parent=Os01t0596700-01
Chr01	irgsp1_rep	three_prime_UTR	23410946	23411171	.	+	.	Parent=Os01t0596700-01
Chr01	irgsp1_rep	mRNA	23439509	23441397	.	+	.	ID=Os01t0597400-00;Name=Os01t0597400-00;Locus_id=Os01g0597400;Oryzabase Gene Symbol Synonym(s)=OsATL16%2C OsSTA21;Oryzabase Gene Name Synonym(s)=amino acid transporter-like 16;Note=Amino acid transporter%2C transmembrane domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01IJ0 (UniProt);InterPro=Amino acid transporter%2C transmembrane (IPR013057);Oryzabase=18533;TENOR=Os01t0597400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	23439509	23440297	.	+	0	Parent=Os01t0597400-00
Chr01	irgsp1_rep	CDS	23440855	23441397	.	+	0	Parent=Os01t0597400-00
Chr01	irgsp1_rep	mRNA	23447173	23448687	.	+	.	ID=Os01t0597600-01;Name=Os01t0597600-01;Locus_id=Os01g0597600;Oryzabase Gene Symbol Synonym(s)=OsATL15%2C ATL15;Oryzabase Gene Name Synonym(s)=amino acid transporter-like 15;Note=Amino acid transporter%2C transmembrane domain containing protein.;Transcript_evidence=AK242293 (DDBJ%2C Best hit);ORF_evidence=Q01IJ0 (UniProt);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=J075191I06;Oryzabase=18532;TENOR=Os01t0597600-01;KEGG=Os01t0597600-01
Chr01	irgsp1_rep	five_prime_UTR	23447173	23447259	.	+	.	Parent=Os01t0597600-01
Chr01	irgsp1_rep	CDS	23447260	23448534	.	+	0	Parent=Os01t0597600-01
Chr01	irgsp1_rep	three_prime_UTR	23448535	23448687	.	+	.	Parent=Os01t0597600-01
Chr01	irgsp1_rep	mRNA	23450174	23451357	.	-	.	ID=Os01t0597701-00;Name=Os01t0597701-00;Locus_id=Os01g0597701;Note=Hypothetical conserved gene.;Transcript_evidence=EU972340 (DDBJ);ORF_evidence=Q7XXM9 (UniProt);TENOR=Os01t0597701-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	23451306	23451357	.	-	.	Parent=Os01t0597701-00
Chr01	irgsp1_rep	CDS	23451185	23451305	.	-	0	Parent=Os01t0597701-00
Chr01	irgsp1_rep	CDS	23450174	23450625	.	-	2	Parent=Os01t0597701-00
Chr01	irgsp1_rep	mRNA	23456074	23458035	.	+	.	ID=Os01t0597800-01;Name=Os01t0597800-01;Locus_id=Os01g0597800;CGSNL Gene Symbol=UGT703A4;CGSNL Gene Name=UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 703A4;Oryzabase Gene Name Synonym(s)=UDP-glucose-dependent glycosyltransferase 703A4;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK063325 (DDBJ%2C Best hit),AK102671 (DDBJ%2C Best hit);ORF_evidence=C4MF46 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=001-113-H06,J033102B03;Oryzabase=15232;Expression=AK063325;TENOR=Os01t0597800-01;KEGG=Os01t0597800-01
Chr01	irgsp1_rep	five_prime_UTR	23456074	23456154	.	+	.	Parent=Os01t0597800-01
Chr01	irgsp1_rep	CDS	23456155	23457648	.	+	0	Parent=Os01t0597800-01
Chr01	irgsp1_rep	three_prime_UTR	23457649	23458035	.	+	.	Parent=Os01t0597800-01
Chr01	irgsp1_rep	mRNA	23464237	23465185	.	+	.	ID=Os01t0598000-00;Name=Os01t0598000-00;Locus_id=Os01g0598000;Note=Similar to UDP-glycosyltransferase UGT703A5.;Transcript_evidence=AJ496572 (DDBJ);ORF_evidence=C4MF46 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os01t0598000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	23464237	23464354	.	+	.	Parent=Os01t0598000-00
Chr01	irgsp1_rep	CDS	23464355	23465185	.	+	0	Parent=Os01t0598000-00
Chr01	irgsp1_rep	mRNA	23498445	23502375	.	+	.	ID=Os01t0598200-01;Name=Os01t0598200-01;Locus_id=Os01g0598200;CGSNL Gene Symbol=CBL5;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN 5;Oryzabase Gene Symbol Synonym(s)=OsCBL5;Oryzabase Gene Name Synonym(s)=Calcineurin B-like protein 5;Note=Similar to Calcineurin B-like protein 8.;Transcript_evidence=AK111570 (DDBJ%2C Best hit);ORF_evidence=Q3HRP2 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Recoverin (IPR001125),Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J013071C24;Oryzabase=6102;Expression=AK111570;TENOR=Os01t0598200-01;KEGG=Os01t0598200-01
Chr01	irgsp1_rep	five_prime_UTR	23498445	23498595	.	+	.	Parent=Os01t0598200-01
Chr01	irgsp1_rep	five_prime_UTR	23499579	23499683	.	+	.	Parent=Os01t0598200-01
Chr01	irgsp1_rep	CDS	23499684	23499774	.	+	0	Parent=Os01t0598200-01
Chr01	irgsp1_rep	CDS	23500191	23500273	.	+	2	Parent=Os01t0598200-01
Chr01	irgsp1_rep	CDS	23500357	23500413	.	+	0	Parent=Os01t0598200-01
Chr01	irgsp1_rep	CDS	23500893	23501001	.	+	0	Parent=Os01t0598200-01
Chr01	irgsp1_rep	CDS	23501119	23501171	.	+	2	Parent=Os01t0598200-01
Chr01	irgsp1_rep	CDS	23501533	23501613	.	+	0	Parent=Os01t0598200-01
Chr01	irgsp1_rep	CDS	23501704	23501816	.	+	0	Parent=Os01t0598200-01
Chr01	irgsp1_rep	CDS	23502093	23502162	.	+	1	Parent=Os01t0598200-01
Chr01	irgsp1_rep	three_prime_UTR	23502163	23502375	.	+	.	Parent=Os01t0598200-01
Chr01	irgsp1_rep	mRNA	23510098	23512343	.	-	.	ID=Os01t0598400-01;Name=Os01t0598400-01;Locus_id=Os01g0598400;Oryzabase Gene Symbol Synonym(s)=OsFbox028%2C OsFbox28%2C Os_F0158;Oryzabase Gene Name Synonym(s)=F-box protein 28;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK109846 (DDBJ%2C Best hit);ORF_evidence=Q5ZAE7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),FBD (IPR013596),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-148-E10;Oryzabase=16829;Expression=AK109846;TENOR=Os01t0598400-01;KEGG=Os01t0598400-01
Chr01	irgsp1_rep	five_prime_UTR	23512215	23512343	.	-	.	Parent=Os01t0598400-01
Chr01	irgsp1_rep	CDS	23511153	23512214	.	-	0	Parent=Os01t0598400-01
Chr01	irgsp1_rep	CDS	23510893	23511042	.	-	0	Parent=Os01t0598400-01
Chr01	irgsp1_rep	CDS	23510312	23510656	.	-	0	Parent=Os01t0598400-01
Chr01	irgsp1_rep	three_prime_UTR	23510098	23510311	.	-	.	Parent=Os01t0598400-01
Chr01	irgsp1_rep	mRNA	23515008	23516765	.	+	.	ID=Os01t0598600-01;Name=Os01t0598600-01;Locus_id=Os01g0598600;Note=Peptidase A1 domain containing protein.;Transcript_evidence=AK101038 (DDBJ%2C Best hit),AK120968 (DDBJ%2C Best hit);ORF_evidence=XP_002892074.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J033000J20,J023040I01;Expression=AK101038;TENOR=Os01t0598600-01;KEGG=Os01t0598600-01
Chr01	irgsp1_rep	five_prime_UTR	23515008	23515036	.	+	.	Parent=Os01t0598600-01
Chr01	irgsp1_rep	CDS	23515037	23516539	.	+	0	Parent=Os01t0598600-01
Chr01	irgsp1_rep	three_prime_UTR	23516540	23516765	.	+	.	Parent=Os01t0598600-01
Chr01	irgsp1_rep	mRNA	23515624	23516765	.	+	.	ID=Os01t0598600-03;Name=Os01t0598600-03;Locus_id=Os01g0598600;Note=Similar to predicted protein.;Transcript_evidence=AK104992 (DDBJ%2C Best hit);ORF_evidence=XP_002892074.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=001-002-G01;Expression=AK104992;TENOR=Os01t0598600-03;KEGG=Os01t0598600-03
Chr01	irgsp1_rep	five_prime_UTR	23515624	23515624	.	+	.	Parent=Os01t0598600-03
Chr01	irgsp1_rep	CDS	23515625	23516539	.	+	0	Parent=Os01t0598600-03
Chr01	irgsp1_rep	three_prime_UTR	23516540	23516765	.	+	.	Parent=Os01t0598600-03
Chr01	irgsp1_rep	mRNA	23530089	23532422	.	-	.	ID=Os01t0598900-00;Name=Os01t0598900-00;Locus_id=Os01g0598900;Note=Cytoplasmic tRNA 2-thiolation protein 1.;Transcript_evidence=Q6Z6G6 (UniProt);ORF_evidence=Q6Z6G6 (UniProt);GO=Biological Process: tRNA processing (GO:0008033),Biological Process: tRNA thio-modification (GO:0034227),Cellular Component: cytoplasm (GO:0005737),Molecular Function: tRNA binding (GO:0000049),Molecular Function: ATP binding (GO:0005524);InterPro=tRNA 2-thiolation protein (IPR000541),tRNA(Ile)-lysidine/2-thiocytidine synthase (IPR011063),2-thiocytidine tRNA biosynthesis protein%2C TtcA (IPR012089),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);TENOR=Os01t0598900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	23532308	23532422	.	-	0	Parent=Os01t0598900-00
Chr01	irgsp1_rep	CDS	23531988	23532130	.	-	2	Parent=Os01t0598900-00
Chr01	irgsp1_rep	CDS	23531716	23531835	.	-	0	Parent=Os01t0598900-00
Chr01	irgsp1_rep	CDS	23531527	23531639	.	-	0	Parent=Os01t0598900-00
Chr01	irgsp1_rep	CDS	23531363	23531455	.	-	1	Parent=Os01t0598900-00
Chr01	irgsp1_rep	CDS	23531232	23531272	.	-	1	Parent=Os01t0598900-00
Chr01	irgsp1_rep	CDS	23530957	23531023	.	-	2	Parent=Os01t0598900-00
Chr01	irgsp1_rep	CDS	23530683	23530794	.	-	1	Parent=Os01t0598900-00
Chr01	irgsp1_rep	CDS	23530089	23530262	.	-	0	Parent=Os01t0598900-00
Chr01	irgsp1_rep	mRNA	23541689	23544345	.	-	.	ID=Os01t0599550-00;Name=Os01t0599550-00;Locus_id=Os01g0599550;Note=Hypothetical gene.;Transcript_evidence=CT834917 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os01t0599550-00;KEGG=Os01t0599550-00
Chr01	irgsp1_rep	five_prime_UTR	23544345	23544345	.	-	.	Parent=Os01t0599550-00
Chr01	irgsp1_rep	CDS	23544111	23544344	.	-	0	Parent=Os01t0599550-00
Chr01	irgsp1_rep	three_prime_UTR	23542790	23544110	.	-	.	Parent=Os01t0599550-00
Chr01	irgsp1_rep	three_prime_UTR	23542391	23542705	.	-	.	Parent=Os01t0599550-00
Chr01	irgsp1_rep	three_prime_UTR	23541689	23542373	.	-	.	Parent=Os01t0599550-00
Chr01	irgsp1_rep	mRNA	23551743	23553931	.	+	.	ID=Os01t0599900-00;Name=Os01t0599900-00;Locus_id=Os01g0599900;CGSNL Gene Symbol=SUN5;CGSNL Gene Name=SUN DOMAIN-CONTAINING PROTEIN 5;Oryzabase Gene Symbol Synonym(s)=OsSUN5;Oryzabase Gene Name Synonym(s)=SUN (Sad1/UNC-84) domain-containing protein 5%2C SUN domain-containing protein 5%2C SUN protein 5;Note=Similar to membrane protein-like.;Transcript_evidence=EU974902 (DDBJ);ORF_evidence=NP_001147071.1 (RefSeq);InterPro=Galactose-binding domain-like (IPR008979),Sad1/UNC-like%2C C-terminal (IPR012919);Oryzabase=22682;TENOR=Os01t0599900-00;KEGG=Os01t0599900-00
Chr01	irgsp1_rep	five_prime_UTR	23551743	23551891	.	+	.	Parent=Os01t0599900-00
Chr01	irgsp1_rep	CDS	23551892	23552075	.	+	0	Parent=Os01t0599900-00
Chr01	irgsp1_rep	CDS	23552166	23553397	.	+	2	Parent=Os01t0599900-00
Chr01	irgsp1_rep	CDS	23553510	23553606	.	+	0	Parent=Os01t0599900-00
Chr01	irgsp1_rep	CDS	23553698	23553699	.	+	2	Parent=Os01t0599900-00
Chr01	irgsp1_rep	three_prime_UTR	23553700	23553931	.	+	.	Parent=Os01t0599900-00
Chr01	irgsp1_rep	mRNA	23554268	23557549	.	-	.	ID=Os01t0600000-01;Name=Os01t0600000-01;Locus_id=Os01g0600000;Note=Similar to Copia-like retroelement pol polyprotein.;Transcript_evidence=AK121212 (DDBJ%2C Best hit);ORF_evidence=NP_001151540.1 (RefSeq);GO=Biological Process: ATP synthesis coupled proton transport (GO:0015986),Cellular Component: mitochondrial proton-transporting ATP synthase complex%2C coupling factor F(o) (GO:0000276),Molecular Function: hydrogen ion transmembrane transporter activity (GO:0015078);InterPro=ATPase%2C F0 complex%2C subunit G%2C mitochondrial (IPR006808);NIAS_FLcDNA=J023089H03;Expression=AK121212;TENOR=Os01t0600000-01;KEGG=Os01t0600000-01
Chr01	irgsp1_rep	five_prime_UTR	23557503	23557549	.	-	.	Parent=Os01t0600000-01
Chr01	irgsp1_rep	five_prime_UTR	23557307	23557309	.	-	.	Parent=Os01t0600000-01
Chr01	irgsp1_rep	CDS	23557125	23557306	.	-	0	Parent=Os01t0600000-01
Chr01	irgsp1_rep	CDS	23554552	23554738	.	-	1	Parent=Os01t0600000-01
Chr01	irgsp1_rep	three_prime_UTR	23554268	23554551	.	-	.	Parent=Os01t0600000-01
Chr01	irgsp1_rep	mRNA	23569843	23576519	.	+	.	ID=Os01t0600200-01;Name=Os01t0600200-01;Locus_id=Os01g0600200;Note=Ser/Thr specific protein phosphatase 2A B regulatory subunit beta isoform.;Transcript_evidence=AK242932 (DDBJ%2C Best hit);ORF_evidence=B7ERB7 (UniProt);GO=Biological Process: signal transduction (GO:0007165),Cellular Component: protein phosphatase type 2A complex (GO:0000159),Molecular Function: protein binding (GO:0005515),Molecular Function: protein phosphatase type 2A regulator activity (GO:0008601);InterPro=Protein phosphatase 2A%2C regulatory subunit PR55 (IPR000009),WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),Protein phosphatase 2A%2C regulatory subunit PR55%2C conserved site (IPR018067),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781);NIAS_FLcDNA=J090086I24;TENOR=Os01t0600200-01;KEGG=Os01t0600200-01
Chr01	irgsp1_rep	five_prime_UTR	23569843	23570111	.	+	.	Parent=Os01t0600200-01
Chr01	irgsp1_rep	CDS	23570112	23570244	.	+	0	Parent=Os01t0600200-01
Chr01	irgsp1_rep	CDS	23571641	23571744	.	+	2	Parent=Os01t0600200-01
Chr01	irgsp1_rep	CDS	23571847	23571942	.	+	0	Parent=Os01t0600200-01
Chr01	irgsp1_rep	CDS	23572023	23572142	.	+	0	Parent=Os01t0600200-01
Chr01	irgsp1_rep	CDS	23572432	23572599	.	+	0	Parent=Os01t0600200-01
Chr01	irgsp1_rep	CDS	23572810	23572901	.	+	0	Parent=Os01t0600200-01
Chr01	irgsp1_rep	CDS	23573628	23573746	.	+	1	Parent=Os01t0600200-01
Chr01	irgsp1_rep	CDS	23574436	23574559	.	+	2	Parent=Os01t0600200-01
Chr01	irgsp1_rep	CDS	23574690	23574813	.	+	1	Parent=Os01t0600200-01
Chr01	irgsp1_rep	CDS	23575180	23575248	.	+	0	Parent=Os01t0600200-01
Chr01	irgsp1_rep	CDS	23575359	23575450	.	+	0	Parent=Os01t0600200-01
Chr01	irgsp1_rep	CDS	23575534	23575611	.	+	1	Parent=Os01t0600200-01
Chr01	irgsp1_rep	CDS	23575816	23575883	.	+	1	Parent=Os01t0600200-01
Chr01	irgsp1_rep	CDS	23575962	23576098	.	+	2	Parent=Os01t0600200-01
Chr01	irgsp1_rep	three_prime_UTR	23576099	23576519	.	+	.	Parent=Os01t0600200-01
Chr01	irgsp1_rep	mRNA	23577237	23580592	.	+	.	ID=Os01t0600300-01;Name=Os01t0600300-01;Locus_id=Os01g0600300;Note=Conserved hypothetical protein.;Transcript_evidence=AK101694 (DDBJ%2C Best hit);ORF_evidence=Q5ZAG0 (UniProt);NIAS_FLcDNA=J033060B02;Expression=AK101694;TENOR=Os01t0600300-01;KEGG=Os01t0600300-01
Chr01	irgsp1_rep	five_prime_UTR	23577237	23577312	.	+	.	Parent=Os01t0600300-01
Chr01	irgsp1_rep	CDS	23577313	23577484	.	+	0	Parent=Os01t0600300-01
Chr01	irgsp1_rep	CDS	23578056	23578139	.	+	2	Parent=Os01t0600300-01
Chr01	irgsp1_rep	CDS	23578243	23578295	.	+	2	Parent=Os01t0600300-01
Chr01	irgsp1_rep	CDS	23579214	23579380	.	+	0	Parent=Os01t0600300-01
Chr01	irgsp1_rep	CDS	23579454	23579602	.	+	1	Parent=Os01t0600300-01
Chr01	irgsp1_rep	CDS	23579703	23580145	.	+	2	Parent=Os01t0600300-01
Chr01	irgsp1_rep	three_prime_UTR	23580146	23580592	.	+	.	Parent=Os01t0600300-01
Chr01	irgsp1_rep	mRNA	23577237	23580529	.	+	.	ID=Os01t0600300-02;Name=Os01t0600300-02;Locus_id=Os01g0600300;Note=Conserved hypothetical protein.;Transcript_evidence=AK102895 (DDBJ%2C Best hit),AK067562 (DDBJ%2C Best hit);ORF_evidence=B9EXX0 (UniProt);NIAS_FLcDNA=J033112N23,J013112G07;TENOR=Os01t0600300-02
Chr01	irgsp1_rep	five_prime_UTR	23577237	23577376	.	+	.	Parent=Os01t0600300-02
Chr01	irgsp1_rep	CDS	23577377	23578139	.	+	0	Parent=Os01t0600300-02
Chr01	irgsp1_rep	CDS	23578243	23578295	.	+	2	Parent=Os01t0600300-02
Chr01	irgsp1_rep	CDS	23579214	23579380	.	+	0	Parent=Os01t0600300-02
Chr01	irgsp1_rep	CDS	23579454	23579602	.	+	1	Parent=Os01t0600300-02
Chr01	irgsp1_rep	CDS	23579703	23580145	.	+	2	Parent=Os01t0600300-02
Chr01	irgsp1_rep	three_prime_UTR	23580146	23580529	.	+	.	Parent=Os01t0600300-02
Chr01	irgsp1_rep	mRNA	23582624	23585981	.	+	.	ID=Os01t0600400-01;Name=Os01t0600400-01;Locus_id=Os01g0600400;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK064442 (DDBJ%2C Best hit);ORF_evidence=B8AB74 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-110-E07;TENOR=Os01t0600400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	23582624	23583694	.	+	0	Parent=Os01t0600400-01
Chr01	irgsp1_rep	three_prime_UTR	23583695	23583775	.	+	.	Parent=Os01t0600400-01
Chr01	irgsp1_rep	three_prime_UTR	23583894	23583978	.	+	.	Parent=Os01t0600400-01
Chr01	irgsp1_rep	three_prime_UTR	23584068	23584484	.	+	.	Parent=Os01t0600400-01
Chr01	irgsp1_rep	three_prime_UTR	23585868	23585981	.	+	.	Parent=Os01t0600400-01
Chr01	irgsp1_rep	mRNA	23584039	23585690	.	-	.	ID=Os01t0600500-01;Name=Os01t0600500-01;Locus_id=Os01g0600500;Note=Similar to Phosphoethanolamine/phosphocholine phosphatase.;Transcript_evidence=AK242332 (DDBJ%2C Best hit);ORF_evidence=B6SZW9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: phosphatase activity (GO:0016791);InterPro=HAD-superfamily hydrolase%2C subfamily IB%2C PSPase-like (IPR006383),Pyridoxal phosphate phosphatase-related (IPR006384),Phosphatase PHOSPHO-type (IPR016965),HAD-like domain (IPR023214);NIAS_FLcDNA=J075198L22;TENOR=Os01t0600500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	23585565	23585690	.	-	.	Parent=Os01t0600500-01
Chr01	irgsp1_rep	CDS	23585382	23585564	.	-	0	Parent=Os01t0600500-01
Chr01	irgsp1_rep	CDS	23585175	23585296	.	-	0	Parent=Os01t0600500-01
Chr01	irgsp1_rep	CDS	23584796	23585063	.	-	1	Parent=Os01t0600500-01
Chr01	irgsp1_rep	three_prime_UTR	23584039	23584795	.	-	.	Parent=Os01t0600500-01
Chr01	irgsp1_rep	mRNA	23607363	23608541	.	+	.	ID=Os01t0600900-02;Name=Os01t0600900-02;Locus_id=Os01g0600900;CGSNL Gene Symbol=CAB2R;CGSNL Gene Name=CHLOROPHYLL A/B BINDING PROTEIN 2R;Oryzabase Gene Symbol Synonym(s)=cab2R%2C CAB-2%2C OsLhcp%2C Lhcb1%2C Lhcb1a%2C OsLhcb1%2C OsLhcb1a;Oryzabase Gene Name Synonym(s)="Chlorophyll a-b binding protein 2%2C chloroplastic"%2C LHCII type I CAB-2%2C light harvesting chlorophyll a/b binding protein 2;Note=Chlorophyll a-b binding protein 2%2C chloroplast precursor (LHCII type I CAB-2) (LHCP).;Transcript_evidence=AK121563 (DDBJ%2C Best hit),AK119173 (DDBJ%2C Best hit);ORF_evidence=P12331 (UniProt);GO=Biological Process: photosynthesis%2C light harvesting (GO:0009765),Cellular Component: membrane (GO:0016020);InterPro=Chlorophyll A-B binding protein%2C plant (IPR001344),Chlorophyll A-B binding protein (IPR022796),Chlorophyll a/b binding protein domain (IPR023329);NIAS_FLcDNA=J033034J10,001-037-B06;Oryzabase=8093;Expression=AK121563;TENOR=Os01t0600900-02;KEGG=Os01t0600900-02
Chr01	irgsp1_rep	five_prime_UTR	23607363	23607432	.	+	.	Parent=Os01t0600900-02
Chr01	irgsp1_rep	CDS	23607433	23608218	.	+	0	Parent=Os01t0600900-02
Chr01	irgsp1_rep	three_prime_UTR	23608219	23608541	.	+	.	Parent=Os01t0600900-02
Chr01	irgsp1_rep	mRNA	23607833	23608482	.	+	.	ID=Os01t0600900-03;Name=Os01t0600900-03;Locus_id=Os01g0600900;CGSNL Gene Symbol=CAB2R;CGSNL Gene Name=CHLOROPHYLL A/B BINDING PROTEIN 2R;Oryzabase Gene Symbol Synonym(s)=cab2R%2C CAB-2%2C OsLhcp%2C Lhcb1%2C Lhcb1a%2C OsLhcb1%2C OsLhcb1a;Oryzabase Gene Name Synonym(s)="Chlorophyll a-b binding protein 2%2C chloroplastic"%2C LHCII type I CAB-2%2C light harvesting chlorophyll a/b binding protein 2;Note=Similar to Chlorophyll a-b binding protein 2%2C chloroplastic.;Transcript_evidence=AK061619 (DDBJ%2C Best hit);ORF_evidence=P12331 (UniProt);GO=Biological Process: photosynthesis%2C light harvesting (GO:0009765),Cellular Component: membrane (GO:0016020);InterPro=Chlorophyll A-B binding protein%2C plant (IPR001344),Chlorophyll A-B binding protein (IPR022796),Chlorophyll a/b binding protein domain (IPR023329);NIAS_FLcDNA=001-033-E02;Oryzabase=8093;Expression=AK061619;TENOR=Os01t0600900-03;KEGG=Os01t0600900-03
Chr01	irgsp1_rep	five_prime_UTR	23607833	23607834	.	+	.	Parent=Os01t0600900-03
Chr01	irgsp1_rep	CDS	23607835	23608218	.	+	0	Parent=Os01t0600900-03
Chr01	irgsp1_rep	three_prime_UTR	23608219	23608482	.	+	.	Parent=Os01t0600900-03
Chr01	irgsp1_rep	mRNA	23611048	23615257	.	-	.	ID=Os01t0601000-00;Name=Os01t0601000-00;Locus_id=Os01g0601000;Oryzabase Gene Symbol Synonym(s)=OsEnS-10;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 10;Note=Mg2+ transporter protein%2C CorA-like/Zinc transport protein ZntB domain containing protein.;Transcript_evidence=AK335773 (DDBJ);ORF_evidence=NP_001043494.2 (RefSeq);GO=Biological Process: metal ion transport (GO:0030001),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: metal ion transmembrane transporter activity (GO:0046873);InterPro=Mg2+ transporter protein%2C CorA-like/Zinc transport protein ZntB (IPR002523);Oryzabase=18354;TENOR=Os01t0601000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	23614559	23615257	.	-	0	Parent=Os01t0601000-00
Chr01	irgsp1_rep	CDS	23612589	23612780	.	-	0	Parent=Os01t0601000-00
Chr01	irgsp1_rep	CDS	23612403	23612500	.	-	0	Parent=Os01t0601000-00
Chr01	irgsp1_rep	CDS	23612260	23612319	.	-	1	Parent=Os01t0601000-00
Chr01	irgsp1_rep	CDS	23611924	23611993	.	-	1	Parent=Os01t0601000-00
Chr01	irgsp1_rep	CDS	23611627	23611830	.	-	0	Parent=Os01t0601000-00
Chr01	irgsp1_rep	CDS	23611059	23611454	.	-	0	Parent=Os01t0601000-00
Chr01	irgsp1_rep	three_prime_UTR	23611048	23611058	.	-	.	Parent=Os01t0601000-00
Chr01	irgsp1_rep	mRNA	23624289	23626972	.	+	.	ID=Os01t0601200-01;Name=Os01t0601200-01;Locus_id=Os01g0601200;CGSNL Gene Symbol=RLCK41;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 41;Oryzabase Gene Symbol Synonym(s)=OsRLCK41;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 41;Note=Similar to Protein kinase family protein.;Transcript_evidence=AK061398 (DDBJ%2C Best hit);ORF_evidence=Q1EPK4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=006-305-F03;Oryzabase=18758;TENOR=Os01t0601200-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	23624289	23624289	.	+	.	Parent=Os01t0601200-01
Chr01	irgsp1_rep	CDS	23624290	23624483	.	+	0	Parent=Os01t0601200-01
Chr01	irgsp1_rep	CDS	23624600	23624704	.	+	1	Parent=Os01t0601200-01
Chr01	irgsp1_rep	CDS	23625540	23625662	.	+	1	Parent=Os01t0601200-01
Chr01	irgsp1_rep	CDS	23625747	23625917	.	+	1	Parent=Os01t0601200-01
Chr01	irgsp1_rep	CDS	23626084	23626213	.	+	1	Parent=Os01t0601200-01
Chr01	irgsp1_rep	CDS	23626421	23626636	.	+	0	Parent=Os01t0601200-01
Chr01	irgsp1_rep	CDS	23626770	23626868	.	+	0	Parent=Os01t0601200-01
Chr01	irgsp1_rep	three_prime_UTR	23626869	23626972	.	+	.	Parent=Os01t0601200-01
Chr01	irgsp1_rep	mRNA	23631980	23635375	.	-	.	ID=Os01t0601625-00;Name=Os01t0601625-00;Locus_id=Os01g0601625;Note=Leucine rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=X79130 (DDBJ);ORF_evidence=NP_001172451.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);TENOR=Os01t0601625-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	23631989	23635375	.	-	0	Parent=Os01t0601625-00
Chr01	irgsp1_rep	three_prime_UTR	23631980	23631988	.	-	.	Parent=Os01t0601625-00
Chr01	irgsp1_rep	mRNA	23637263	23640649	.	+	.	ID=Os01t0601651-01;Name=Os01t0601651-01;Locus_id=Os01g0601651;Note=Plant disease resistance response protein domain containing protein.;Transcript_evidence=AK287464 (DDBJ%2C Best hit);ORF_evidence=GeneMark;InterPro=Plant disease resistance response protein (IPR004265);NIAS_FLcDNA=J043021D10;TENOR=Os01t0601651-01;KEGG=Os01t0601651-01
Chr01	irgsp1_rep	five_prime_UTR	23637263	23637263	.	+	.	Parent=Os01t0601651-01
Chr01	irgsp1_rep	CDS	23637264	23637689	.	+	0	Parent=Os01t0601651-01
Chr01	irgsp1_rep	three_prime_UTR	23637690	23638589	.	+	.	Parent=Os01t0601651-01
Chr01	irgsp1_rep	three_prime_UTR	23640014	23640649	.	+	.	Parent=Os01t0601651-01
Chr01	irgsp1_rep	mRNA	23639654	23642878	.	-	.	ID=Os01t0601675-01;Name=Os01t0601675-01;Locus_id=Os01g0601675;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=AK241810 (DDBJ%2C Best hit);ORF_evidence=NP_001172452.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J065210J08;TENOR=Os01t0601675-01;KEGG=Os01t0601675-01
Chr01	irgsp1_rep	five_prime_UTR	23642848	23642878	.	-	.	Parent=Os01t0601675-01
Chr01	irgsp1_rep	CDS	23639986	23642847	.	-	0	Parent=Os01t0601675-01
Chr01	irgsp1_rep	three_prime_UTR	23639654	23639985	.	-	.	Parent=Os01t0601675-01
Chr01	irgsp1_rep	mRNA	23647679	23647738	.	+	.	ID=Os01t0601687-00;Name=Os01t0601687-00;Locus_id=Os01g0601687;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0601687-00
Chr01	irgsp1_rep	exon	23647679	23647738	.	+	.	Parent=Os01t0601687-00
Chr01	irgsp1_rep	mRNA	23648429	23651499	.	-	.	ID=Os01t0601700-01;Name=Os01t0601700-01;Locus_id=Os01g0601700;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=AK072103 (DDBJ%2C Best hit);ORF_evidence=XP_002438882.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591);NIAS_FLcDNA=J013120K23;TENOR=Os01t0601700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	23650534	23651499	.	-	.	Parent=Os01t0601700-01
Chr01	irgsp1_rep	CDS	23648581	23650533	.	-	0	Parent=Os01t0601700-01
Chr01	irgsp1_rep	three_prime_UTR	23648429	23648580	.	-	.	Parent=Os01t0601700-01
Chr01	irgsp1_rep	mRNA	23663180	23664198	.	+	.	ID=Os01t0602075-00;Name=Os01t0602075-00;Locus_id=Os01g0602075;Note=Non-protein coding transcript.;Transcript_evidence=tplb0028e19 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os01t0602075-00
Chr01	irgsp1_rep	exon	23663180	23663697	.	+	.	Parent=Os01t0602075-00
Chr01	irgsp1_rep	exon	23663805	23664198	.	+	.	Parent=Os01t0602075-00
Chr01	irgsp1_rep	mRNA	23663277	23664196	.	-	.	ID=Os01t0602200-01;Name=Os01t0602200-01;Locus_id=Os01g0602200;RAP-DB Gene Symbol Synonym(s)=CYP72A31;RAP-DB Gene Name Synonym(s)=P-450 72A31%2C CytoChrome P450 72A31;CGSNL Gene Symbol=CYP72A31;CGSNL Gene Name=P-450 72A31;Oryzabase Gene Name Synonym(s)=CytoChrome P450 72A31;Note=CytoChrome P450 monooxygenase%2C Tolerance to acetolactate synthase-inhibiting herbicides (pseudogene);Transcript_evidence=AB907219 (Kasalath);ORF_evidence=A2WS96;Manual Curation=November 17%2C 2014;Literature_PMID=24406793;Oryzabase=17793;TENOR=Os01t0602200-00;Comment=CYP72A31 gene is not functional in Nipponbare due to a 3.4-kb deletion including the region that corresponds to the first and second exons
Chr01	irgsp1_rep	CDS	23663813	23664196	.	-	0	Parent=Os01t0602200-01
Chr01	irgsp1_rep	CDS	23663277	23663702	.	-	0	Parent=Os01t0602200-01
Chr01	irgsp1_rep	mRNA	23673178	23675960	.	-	.	ID=Os01t0602400-01;Name=Os01t0602400-01;Locus_id=Os01g0602400;CGSNL Gene Symbol=CYP72A32;CGSNL Gene Name=P-450 72A32;Oryzabase Gene Symbol Synonym(s)=OsCYP72A32;Oryzabase Gene Name Synonym(s)=CytoChrome P450 72A32;Note=Similar to CytoChrome P450 monooxygenase CYP72A5 (Fragment).;Transcript_evidence=AK107349 (DDBJ%2C Best hit);ORF_evidence=Q3C1U0 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=002-126-H03;Oryzabase=17794;Expression=AK107349;TENOR=Os01t0602400-01;KEGG=Os01t0602400-01
Chr01	irgsp1_rep	five_prime_UTR	23675870	23675960	.	-	.	Parent=Os01t0602400-01
Chr01	irgsp1_rep	CDS	23675318	23675869	.	-	0	Parent=Os01t0602400-01
Chr01	irgsp1_rep	CDS	23674673	23674917	.	-	0	Parent=Os01t0602400-01
Chr01	irgsp1_rep	CDS	23673826	23674210	.	-	1	Parent=Os01t0602400-01
Chr01	irgsp1_rep	CDS	23673292	23673717	.	-	0	Parent=Os01t0602400-01
Chr01	irgsp1_rep	three_prime_UTR	23673178	23673291	.	-	.	Parent=Os01t0602400-01
Chr01	irgsp1_rep	mRNA	23673288	23675912	.	+	.	ID=Os01t0602433-00;Name=Os01t0602433-00;Locus_id=Os01g0602433;Note=Hypothetical protein.;Transcript_evidence=tplb0021h11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0602433-00
Chr01	irgsp1_rep	five_prime_UTR	23673288	23673348	.	+	.	Parent=Os01t0602433-00
Chr01	irgsp1_rep	CDS	23673349	23673712	.	+	0	Parent=Os01t0602433-00
Chr01	irgsp1_rep	CDS	23673818	23673876	.	+	2	Parent=Os01t0602433-00
Chr01	irgsp1_rep	three_prime_UTR	23673877	23674198	.	+	.	Parent=Os01t0602433-00
Chr01	irgsp1_rep	three_prime_UTR	23674659	23674917	.	+	.	Parent=Os01t0602433-00
Chr01	irgsp1_rep	three_prime_UTR	23675318	23675912	.	+	.	Parent=Os01t0602433-00
Chr01	irgsp1_rep	mRNA	23682415	23685494	.	+	.	ID=Os01t0602466-00;Name=Os01t0602466-00;Locus_id=Os01g0602466;Note=Hypothetical protein.;Transcript_evidence=tplb0021h11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0602466-00
Chr01	irgsp1_rep	five_prime_UTR	23682415	23682832	.	+	.	Parent=Os01t0602466-00
Chr01	irgsp1_rep	five_prime_UTR	23682938	23683318	.	+	.	Parent=Os01t0602466-00
Chr01	irgsp1_rep	five_prime_UTR	23684125	23684255	.	+	.	Parent=Os01t0602466-00
Chr01	irgsp1_rep	CDS	23684256	23684383	.	+	0	Parent=Os01t0602466-00
Chr01	irgsp1_rep	CDS	23684872	23685238	.	+	1	Parent=Os01t0602466-00
Chr01	irgsp1_rep	three_prime_UTR	23685239	23685494	.	+	.	Parent=Os01t0602466-00
Chr01	irgsp1_rep	mRNA	23682892	23685395	.	-	.	ID=Os01t0602500-01;Name=Os01t0602500-01;Locus_id=Os01g0602500;CGSNL Gene Symbol=CYP72A33;CGSNL Gene Name=P-450 72A33;Oryzabase Gene Name Synonym(s)=CytoChrome P450 72A33;Note=CytoChrome P450 family protein.;Transcript_evidence=AK099492 (DDBJ%2C Best hit);ORF_evidence=Q8S9F0 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);NIAS_FLcDNA=J013027D06;Oryzabase=17795;Expression=AK099492;TENOR=Os01t0602500-01;KEGG=Os01t0602500-01
Chr01	irgsp1_rep	five_prime_UTR	23685394	23685395	.	-	.	Parent=Os01t0602500-01
Chr01	irgsp1_rep	CDS	23684872	23685393	.	-	0	Parent=Os01t0602500-01
Chr01	irgsp1_rep	CDS	23684139	23684383	.	-	0	Parent=Os01t0602500-01
Chr01	irgsp1_rep	CDS	23682931	23683330	.	-	1	Parent=Os01t0602500-01
Chr01	irgsp1_rep	three_prime_UTR	23682892	23682930	.	-	.	Parent=Os01t0602500-01
Chr01	irgsp1_rep	mRNA	23688285	23689293	.	-	.	ID=Os01t0602600-00;Name=Os01t0602600-00;Locus_id=Os01g0602600;CGSNL Gene Symbol=PKS1;CGSNL Gene Name=POLYKETIDE SYNTHASE 1;Oryzabase Gene Symbol Synonym(s)=OsPKS01%2C PKS01%2C OsPKS1%2C OsCHS1%2C CHS1;Oryzabase Gene Name Synonym(s)=polyketide synthase 1%2C Chalcone synthase 1;Note=Similar to OSIGBa0148I18.6 protein.;Transcript_evidence=AY221245 (DDBJ);ORF_evidence=Q01N31 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Chalcone/stilbene synthase%2C N-terminal (IPR001099),Polyketide synthase%2C type III (IPR011141),Chalcone/stilbene synthase%2C C-terminal (IPR012328),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);Oryzabase=21553;TENOR=Os01t0602600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	23688289	23689293	.	-	0	Parent=Os01t0602600-00
Chr01	irgsp1_rep	three_prime_UTR	23688285	23688288	.	-	.	Parent=Os01t0602600-00
Chr01	irgsp1_rep	mRNA	23727763	23733053	.	+	.	ID=Os01t0602800-01;Name=Os01t0602800-01;Locus_id=Os01g0602800;CGSNL Gene Symbol=RLCK42;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 42;Oryzabase Gene Symbol Synonym(s)=OsRLCK42;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 42;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK242850 (DDBJ%2C Best hit);ORF_evidence=NP_187982.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Tyrosine-protein kinase%2C active site (IPR008266),Protein kinase-like domain (IPR011009),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J090072P03;Oryzabase=18759;TENOR=Os01t0602800-01;KEGG=Os01t0602800-01
Chr01	irgsp1_rep	five_prime_UTR	23727763	23728014	.	+	.	Parent=Os01t0602800-01
Chr01	irgsp1_rep	five_prime_UTR	23728997	23729032	.	+	.	Parent=Os01t0602800-01
Chr01	irgsp1_rep	CDS	23729033	23729261	.	+	0	Parent=Os01t0602800-01
Chr01	irgsp1_rep	CDS	23729512	23729648	.	+	2	Parent=Os01t0602800-01
Chr01	irgsp1_rep	CDS	23729738	23729832	.	+	0	Parent=Os01t0602800-01
Chr01	irgsp1_rep	CDS	23729922	23730946	.	+	1	Parent=Os01t0602800-01
Chr01	irgsp1_rep	CDS	23731182	23731342	.	+	2	Parent=Os01t0602800-01
Chr01	irgsp1_rep	CDS	23731705	23731781	.	+	0	Parent=Os01t0602800-01
Chr01	irgsp1_rep	CDS	23731867	23732014	.	+	1	Parent=Os01t0602800-01
Chr01	irgsp1_rep	CDS	23732253	23732402	.	+	0	Parent=Os01t0602800-01
Chr01	irgsp1_rep	CDS	23732500	23732727	.	+	0	Parent=Os01t0602800-01
Chr01	irgsp1_rep	three_prime_UTR	23732728	23733053	.	+	.	Parent=Os01t0602800-01
Chr01	irgsp1_rep	mRNA	23740879	23744974	.	-	.	ID=Os01t0603000-01;Name=Os01t0603000-01;Locus_id=Os01g0603000;Note=Similar to Nuclear RNA binding protein A.;Transcript_evidence=AK065107 (DDBJ%2C Best hit);ORF_evidence=A6N0I9 (UniProt);InterPro=Hyaluronan/mRNA-binding protein (IPR006861),Stm1%2C N-terminal (IPR019084);NIAS_FLcDNA=J013001N19;Expression=AK065107;TENOR=Os01t0603000-01;KEGG=Os01t0603000-01
Chr01	irgsp1_rep	five_prime_UTR	23744745	23744974	.	-	.	Parent=Os01t0603000-01
Chr01	irgsp1_rep	CDS	23744582	23744744	.	-	0	Parent=Os01t0603000-01
Chr01	irgsp1_rep	CDS	23743614	23744025	.	-	2	Parent=Os01t0603000-01
Chr01	irgsp1_rep	CDS	23743366	23743510	.	-	1	Parent=Os01t0603000-01
Chr01	irgsp1_rep	CDS	23741486	23741644	.	-	0	Parent=Os01t0603000-01
Chr01	irgsp1_rep	CDS	23741349	23741405	.	-	0	Parent=Os01t0603000-01
Chr01	irgsp1_rep	CDS	23741067	23741267	.	-	0	Parent=Os01t0603000-01
Chr01	irgsp1_rep	three_prime_UTR	23740879	23741066	.	-	.	Parent=Os01t0603000-01
Chr01	irgsp1_rep	mRNA	23746840	23751713	.	+	.	ID=Os01t0603100-01;Name=Os01t0603100-01;Locus_id=Os01g0603100;Note=NB-ARC domain containing protein.;Transcript_evidence=AK073480 (DDBJ%2C Best hit);ORF_evidence=B8ABH5 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J033046J06;Expression=AK073480;TENOR=Os01t0603100-01;KEGG=Os01t0603100-01
Chr01	irgsp1_rep	five_prime_UTR	23746840	23746859	.	+	.	Parent=Os01t0603100-01
Chr01	irgsp1_rep	CDS	23746860	23747683	.	+	0	Parent=Os01t0603100-01
Chr01	irgsp1_rep	CDS	23749594	23750419	.	+	1	Parent=Os01t0603100-01
Chr01	irgsp1_rep	three_prime_UTR	23750420	23751713	.	+	.	Parent=Os01t0603100-01
Chr01	irgsp1_rep	mRNA	23750300	23751636	.	-	.	ID=Os01t0603200-01;Name=Os01t0603200-01;Locus_id=Os01g0603200;Note=Conserved hypothetical protein.;Transcript_evidence=AK063738 (DDBJ%2C Best hit);ORF_evidence=B9EXY0 (UniProt);NIAS_FLcDNA=001-120-F05;TENOR=Os01t0603200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	23751599	23751636	.	-	.	Parent=Os01t0603200-01
Chr01	irgsp1_rep	CDS	23750780	23751598	.	-	0	Parent=Os01t0603200-01
Chr01	irgsp1_rep	three_prime_UTR	23750300	23750779	.	-	.	Parent=Os01t0603200-01
Chr01	irgsp1_rep	mRNA	23748957	23751526	.	-	.	ID=Os01t0603200-02;Name=Os01t0603200-02;Locus_id=Os01g0603200;Note=Hypothetical protein.;Transcript_evidence=AK063539 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-117-C04;TENOR=Os01t0603200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	23750780	23751526	.	-	0	Parent=Os01t0603200-02
Chr01	irgsp1_rep	three_prime_UTR	23750615	23750779	.	-	.	Parent=Os01t0603200-02
Chr01	irgsp1_rep	three_prime_UTR	23748957	23750533	.	-	.	Parent=Os01t0603200-02
Chr01	irgsp1_rep	mRNA	23760347	23762387	.	+	.	ID=Os01t0603300-01;Name=Os01t0603300-01;Locus_id=Os01g0603300;CGSNL Gene Symbol=DLN13;CGSNL Gene Name=DLN REPRESSOR 13;Oryzabase Gene Symbol Synonym(s)=OsDLN13;Oryzabase Gene Name Synonym(s)=DLN repressor 13%2C DLN motif protein 13;Note=Similar to MCB2 protein.;Transcript_evidence=AK103432 (DDBJ%2C Best hit);ORF_evidence=Q9AVV5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=SANT domain%2C DNA binding (IPR001005),Zinc finger%2C CCHC-type (IPR001878),Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J033128P13;Oryzabase=23156;Expression=AK103432;TENOR=Os01t0603300-01;KEGG=Os01t0603300-01
Chr01	irgsp1_rep	five_prime_UTR	23760347	23760570	.	+	.	Parent=Os01t0603300-01
Chr01	irgsp1_rep	CDS	23760571	23760964	.	+	0	Parent=Os01t0603300-01
Chr01	irgsp1_rep	CDS	23761419	23761615	.	+	2	Parent=Os01t0603300-01
Chr01	irgsp1_rep	CDS	23761714	23762028	.	+	0	Parent=Os01t0603300-01
Chr01	irgsp1_rep	three_prime_UTR	23762029	23762387	.	+	.	Parent=Os01t0603300-01
Chr01	irgsp1_rep	mRNA	23760580	23762293	.	+	.	ID=Os01t0603300-02;Name=Os01t0603300-02;Locus_id=Os01g0603300;CGSNL Gene Symbol=DLN13;CGSNL Gene Name=DLN REPRESSOR 13;Oryzabase Gene Symbol Synonym(s)=OsDLN13;Oryzabase Gene Name Synonym(s)=DLN repressor 13%2C DLN motif protein 13;Note=Similar to MCB2 protein.;Transcript_evidence=AK061500 (DDBJ%2C Best hit);ORF_evidence=Q9AVV5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=006-309-D10;Oryzabase=23156;Expression=AK061500;TENOR=Os01t0603300-02;KEGG=Os01t0603300-02
Chr01	irgsp1_rep	five_prime_UTR	23760580	23760660	.	+	.	Parent=Os01t0603300-02
Chr01	irgsp1_rep	CDS	23760661	23760964	.	+	0	Parent=Os01t0603300-02
Chr01	irgsp1_rep	CDS	23761419	23761615	.	+	2	Parent=Os01t0603300-02
Chr01	irgsp1_rep	CDS	23761714	23762028	.	+	0	Parent=Os01t0603300-02
Chr01	irgsp1_rep	three_prime_UTR	23762029	23762293	.	+	.	Parent=Os01t0603300-02
Chr01	irgsp1_rep	mRNA	23770115	23771515	.	+	.	ID=Os01t0603500-00;Name=Os01t0603500-00;Locus_id=Os01g0603500;Note=Similar to Cf2/Cf5-like disease resistance protein (Fragment).;Transcript_evidence=X79130 (DDBJ);ORF_evidence=C6ERA5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);TENOR=Os01t0603500-00
Chr01	irgsp1_rep	CDS	23770115	23771515	.	+	0	Parent=Os01t0603500-00
Chr01	irgsp1_rep	mRNA	23776275	23780692	.	-	.	ID=Os01t0603700-01;Name=Os01t0603700-01;Locus_id=Os01g0603700;Note=Hypothetical gene.;Transcript_evidence=AK068313 (DDBJ%2C Best hit),AK065432 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013150P04,J013022I19;Expression=AK068313;TENOR=Os01t0603700-01;KEGG=Os01t0603700-01
Chr01	irgsp1_rep	five_prime_UTR	23780526	23780692	.	-	.	Parent=Os01t0603700-01
Chr01	irgsp1_rep	CDS	23780241	23780525	.	-	0	Parent=Os01t0603700-01
Chr01	irgsp1_rep	three_prime_UTR	23780175	23780240	.	-	.	Parent=Os01t0603700-01
Chr01	irgsp1_rep	three_prime_UTR	23776275	23779237	.	-	.	Parent=Os01t0603700-01
Chr01	irgsp1_rep	mRNA	23776466	23779747	.	+	.	ID=Os01t0603800-01;Name=Os01t0603800-01;Locus_id=Os01g0603800;Oryzabase Gene Symbol Synonym(s)=OsSTA22;Note=Similar to Triticum sp. (pAWJL3) leucine rich repeat region mRNA (Fragment).;Transcript_evidence=AK066820 (DDBJ%2C Best hit);ORF_evidence=Q5ZBC3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J013086C21;Oryzabase=19331;Expression=AK066820;TENOR=Os01t0603800-01;KEGG=Os01t0603800-01
Chr01	irgsp1_rep	five_prime_UTR	23776466	23776501	.	+	.	Parent=Os01t0603800-01
Chr01	irgsp1_rep	CDS	23776502	23778667	.	+	0	Parent=Os01t0603800-01
Chr01	irgsp1_rep	three_prime_UTR	23778668	23779747	.	+	.	Parent=Os01t0603800-01
Chr01	irgsp1_rep	mRNA	23782638	23784025	.	-	.	ID=Os01t0604000-01;Name=Os01t0604000-01;Locus_id=Os01g0604000;Note=Hypothetical protein.;Transcript_evidence=AK067145 (DDBJ%2C Best hit),AK109130 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013098M04,002-155-D09;Expression=AK067145;TENOR=Os01t0604000-01;KEGG=Os01t0604000-01
Chr01	irgsp1_rep	five_prime_UTR	23783883	23784025	.	-	.	Parent=Os01t0604000-01
Chr01	irgsp1_rep	CDS	23783202	23783882	.	-	0	Parent=Os01t0604000-01
Chr01	irgsp1_rep	three_prime_UTR	23782638	23783201	.	-	.	Parent=Os01t0604000-01
Chr01	irgsp1_rep	mRNA	23782830	23785773	.	+	.	ID=Os01t0604100-01;Name=Os01t0604100-01;Locus_id=Os01g0604100;Note=Conserved hypothetical protein.;Transcript_evidence=AK099765 (DDBJ%2C Best hit);ORF_evidence=B9EXY5 (UniProt);NIAS_FLcDNA=J013094O21;TENOR=Os01t0604100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	23782830	23783143	.	+	.	Parent=Os01t0604100-01
Chr01	irgsp1_rep	five_prime_UTR	23783232	23783473	.	+	.	Parent=Os01t0604100-01
Chr01	irgsp1_rep	CDS	23783474	23784067	.	+	0	Parent=Os01t0604100-01
Chr01	irgsp1_rep	three_prime_UTR	23784068	23785773	.	+	.	Parent=Os01t0604100-01
Chr01	irgsp1_rep	mRNA	23787960	23789747	.	+	.	ID=Os01t0604150-00;Name=Os01t0604150-00;Locus_id=Os01g0604150;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9EXY6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);TENOR=Os01t0604150-00
Chr01	irgsp1_rep	CDS	23787960	23789747	.	+	0	Parent=Os01t0604150-00
Chr01	irgsp1_rep	mRNA	23810484	23811557	.	-	.	ID=Os01t0604500-01;Name=Os01t0604500-01;Locus_id=Os01g0604500;CGSNL Gene Symbol=CML12;CGSNL Gene Name=CALMODULIN-LIKE PROTEIN 12;Oryzabase Gene Symbol Synonym(s)=OsCML12;Oryzabase Gene Name Synonym(s)=calmodulin-like protein 12;Note=EF-Hand type domain containing protein.;Transcript_evidence=AK064844 (DDBJ%2C Best hit);ORF_evidence=Q5ZD81 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J013000G08;Oryzabase=10498;Expression=AK064844;TENOR=Os01t0604500-01;KEGG=Os01t0604500-01
Chr01	irgsp1_rep	five_prime_UTR	23811540	23811557	.	-	.	Parent=Os01t0604500-01
Chr01	irgsp1_rep	CDS	23810790	23811539	.	-	0	Parent=Os01t0604500-01
Chr01	irgsp1_rep	three_prime_UTR	23810484	23810789	.	-	.	Parent=Os01t0604500-01
Chr01	irgsp1_rep	mRNA	23812998	23813573	.	-	.	ID=Os01t0604550-01;Name=Os01t0604550-01;Locus_id=Os01g0604550;Note=Hypothetical conserved gene.;Transcript_evidence=AK108008 (DDBJ%2C Best hit);ORF_evidence=B9GDP1 (UniProt);NIAS_FLcDNA=002-135-H01;Expression=AK108008;TENOR=Os01t0604550-01;KEGG=Os01t0604550-01
Chr01	irgsp1_rep	five_prime_UTR	23813396	23813573	.	-	.	Parent=Os01t0604550-01
Chr01	irgsp1_rep	CDS	23813168	23813395	.	-	0	Parent=Os01t0604550-01
Chr01	irgsp1_rep	three_prime_UTR	23812998	23813167	.	-	.	Parent=Os01t0604550-01
Chr01	irgsp1_rep	mRNA	23813192	23814608	.	+	.	ID=Os01t0604600-01;Name=Os01t0604600-01;Locus_id=Os01g0604600;Note=Carbohydrate kinase%2C FGGY family protein.;Transcript_evidence=AK109640 (DDBJ%2C Best hit);ORF_evidence=Q9LT51 (UniProt);NIAS_FLcDNA=002-138-E08;Expression=AK109640;TENOR=Os01t0604600-01;KEGG=Os01t0604600-01
Chr01	irgsp1_rep	five_prime_UTR	23813192	23813241	.	+	.	Parent=Os01t0604600-01
Chr01	irgsp1_rep	CDS	23813242	23813700	.	+	0	Parent=Os01t0604600-01
Chr01	irgsp1_rep	three_prime_UTR	23813701	23814608	.	+	.	Parent=Os01t0604600-01
Chr01	irgsp1_rep	mRNA	23814822	23819251	.	-	.	ID=Os01t0604700-01;Name=Os01t0604700-01;Locus_id=Os01g0604700;Note=Similar to cDNA clone:001-043-A08%2C full insert sequence.;Transcript_evidence=AK071681 (DDBJ%2C Best hit);ORF_evidence=B7E741 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Uncharacterised protein family UPF0121 (IPR005344);NIAS_FLcDNA=J023109M08;Expression=AK071681;TENOR=Os01t0604700-01;KEGG=Os01t0604700-01
Chr01	irgsp1_rep	five_prime_UTR	23819164	23819251	.	-	.	Parent=Os01t0604700-01
Chr01	irgsp1_rep	CDS	23818960	23819163	.	-	0	Parent=Os01t0604700-01
Chr01	irgsp1_rep	CDS	23817631	23817745	.	-	0	Parent=Os01t0604700-01
Chr01	irgsp1_rep	CDS	23817288	23817394	.	-	2	Parent=Os01t0604700-01
Chr01	irgsp1_rep	CDS	23816756	23816881	.	-	0	Parent=Os01t0604700-01
Chr01	irgsp1_rep	CDS	23816533	23816653	.	-	0	Parent=Os01t0604700-01
Chr01	irgsp1_rep	CDS	23816362	23816450	.	-	2	Parent=Os01t0604700-01
Chr01	irgsp1_rep	CDS	23816114	23816223	.	-	0	Parent=Os01t0604700-01
Chr01	irgsp1_rep	CDS	23815979	23816018	.	-	1	Parent=Os01t0604700-01
Chr01	irgsp1_rep	CDS	23815465	23815617	.	-	0	Parent=Os01t0604700-01
Chr01	irgsp1_rep	three_prime_UTR	23814822	23815464	.	-	.	Parent=Os01t0604700-01
Chr01	irgsp1_rep	mRNA	23815187	23819246	.	-	.	ID=Os01t0604700-02;Name=Os01t0604700-02;Locus_id=Os01g0604700;Note=Similar to predicted protein.;Transcript_evidence=AK063423 (DDBJ%2C Best hit);ORF_evidence=B7E741 (UniProt);NIAS_FLcDNA=001-115-C07;Expression=AK063423;TENOR=Os01t0604700-02;KEGG=Os01t0604700-02
Chr01	irgsp1_rep	five_prime_UTR	23819245	23819246	.	-	.	Parent=Os01t0604700-02
Chr01	irgsp1_rep	CDS	23819184	23819244	.	-	0	Parent=Os01t0604700-02
Chr01	irgsp1_rep	CDS	23818918	23819105	.	-	2	Parent=Os01t0604700-02
Chr01	irgsp1_rep	three_prime_UTR	23817631	23818917	.	-	.	Parent=Os01t0604700-02
Chr01	irgsp1_rep	three_prime_UTR	23817288	23817394	.	-	.	Parent=Os01t0604700-02
Chr01	irgsp1_rep	three_prime_UTR	23816756	23816881	.	-	.	Parent=Os01t0604700-02
Chr01	irgsp1_rep	three_prime_UTR	23816533	23816653	.	-	.	Parent=Os01t0604700-02
Chr01	irgsp1_rep	three_prime_UTR	23816362	23816450	.	-	.	Parent=Os01t0604700-02
Chr01	irgsp1_rep	three_prime_UTR	23816114	23816223	.	-	.	Parent=Os01t0604700-02
Chr01	irgsp1_rep	three_prime_UTR	23815979	23816018	.	-	.	Parent=Os01t0604700-02
Chr01	irgsp1_rep	three_prime_UTR	23815187	23815617	.	-	.	Parent=Os01t0604700-02
Chr01	irgsp1_rep	mRNA	23829864	23830601	.	+	.	ID=Os01t0604900-01;Name=Os01t0604900-01;Locus_id=Os01g0604900;Oryzabase Gene Symbol Synonym(s)=OsSTA24;Note=Hypothetical protein.;Transcript_evidence=AK120772 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J023008I05;Oryzabase=19333;TENOR=Os01t0604900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	23829864	23829935	.	+	.	Parent=Os01t0604900-01
Chr01	irgsp1_rep	CDS	23829936	23830214	.	+	0	Parent=Os01t0604900-01
Chr01	irgsp1_rep	three_prime_UTR	23830215	23830601	.	+	.	Parent=Os01t0604900-01
Chr01	irgsp1_rep	mRNA	23838814	23840798	.	-	.	ID=Os01t0605000-01;Name=Os01t0605000-01;Locus_id=Os01g0605000;Note=Hypothetical protein.;Transcript_evidence=AK110890 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-172-H07;Expression=AK110890;TENOR=Os01t0605000-01;KEGG=Os01t0605000-01
Chr01	irgsp1_rep	five_prime_UTR	23839806	23840798	.	-	.	Parent=Os01t0605000-01
Chr01	irgsp1_rep	CDS	23839756	23839805	.	-	0	Parent=Os01t0605000-01
Chr01	irgsp1_rep	CDS	23839252	23839543	.	-	1	Parent=Os01t0605000-01
Chr01	irgsp1_rep	CDS	23838874	23839158	.	-	0	Parent=Os01t0605000-01
Chr01	irgsp1_rep	three_prime_UTR	23838814	23838873	.	-	.	Parent=Os01t0605000-01
Chr01	irgsp1_rep	mRNA	23838868	23840725	.	+	.	ID=Os01t0605100-01;Name=Os01t0605100-01;Locus_id=Os01g0605100;Note=Similar to BCS1 protein-like protein.;Transcript_evidence=AK120157 (DDBJ%2C Best hit);ORF_evidence=NP_001147824.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);NIAS_FLcDNA=J013030D19;Expression=AK120157;TENOR=Os01t0605100-01;KEGG=Os01t0605100-01
Chr01	irgsp1_rep	five_prime_UTR	23838868	23839008	.	+	.	Parent=Os01t0605100-01
Chr01	irgsp1_rep	CDS	23839009	23839294	.	+	0	Parent=Os01t0605100-01
Chr01	irgsp1_rep	CDS	23839394	23839998	.	+	2	Parent=Os01t0605100-01
Chr01	irgsp1_rep	CDS	23840093	23840563	.	+	0	Parent=Os01t0605100-01
Chr01	irgsp1_rep	three_prime_UTR	23840564	23840725	.	+	.	Parent=Os01t0605100-01
Chr01	irgsp1_rep	mRNA	23843274	23846735	.	+	.	ID=Os01t0605300-01;Name=Os01t0605300-01;Locus_id=Os01g0605300;CGSNL Gene Symbol=UBC48;CGSNL Gene Name=UBIQUITIN-CONJUGATING ENZYME 48;Oryzabase Gene Symbol Synonym(s)=OsUBC48;Oryzabase Gene Name Synonym(s)=Ubiquitin-conjugating enzyme 48;Note=Similar to Likely ubiquitin-conjugating enzyme e2.;Transcript_evidence=AK063933 (DDBJ%2C Best hit);ORF_evidence=A2WSC9 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135),Ubiquitin-conjugating enzyme%2C active site (IPR023313);NIAS_FLcDNA=001-123-D05;Oryzabase=19580;Expression=AK063933;TENOR=Os01t0605300-01;KEGG=Os01t0605300-01
Chr01	irgsp1_rep	five_prime_UTR	23843274	23843453	.	+	.	Parent=Os01t0605300-01
Chr01	irgsp1_rep	five_prime_UTR	23844293	23844315	.	+	.	Parent=Os01t0605300-01
Chr01	irgsp1_rep	CDS	23844316	23844451	.	+	0	Parent=Os01t0605300-01
Chr01	irgsp1_rep	CDS	23844588	23844657	.	+	2	Parent=Os01t0605300-01
Chr01	irgsp1_rep	CDS	23844735	23844840	.	+	1	Parent=Os01t0605300-01
Chr01	irgsp1_rep	CDS	23844975	23845073	.	+	0	Parent=Os01t0605300-01
Chr01	irgsp1_rep	CDS	23845209	23845331	.	+	0	Parent=Os01t0605300-01
Chr01	irgsp1_rep	CDS	23845444	23846580	.	+	0	Parent=Os01t0605300-01
Chr01	irgsp1_rep	three_prime_UTR	23846581	23846735	.	+	.	Parent=Os01t0605300-01
Chr01	irgsp1_rep	mRNA	23847041	23850326	.	+	.	ID=Os01t0605400-00;Name=Os01t0605400-00;Locus_id=Os01g0605400;Oryzabase Gene Name Synonym(s)=Quinonprotein alcohol dehydrogenase-like domain-containing protein;Note=Quinonprotein alcohol dehydrogenase-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2ZV75 (UniProt);InterPro=Quinonprotein alcohol dehydrogenase-like (IPR011047),Pyrrolo-quinoline quinone beta-propeller repeat (IPR018391);Oryzabase=22014;TENOR=Os01t0605400-00
Chr01	irgsp1_rep	CDS	23847041	23847161	.	+	0	Parent=Os01t0605400-00
Chr01	irgsp1_rep	CDS	23847330	23847517	.	+	2	Parent=Os01t0605400-00
Chr01	irgsp1_rep	CDS	23847765	23848094	.	+	0	Parent=Os01t0605400-00
Chr01	irgsp1_rep	CDS	23848208	23848454	.	+	0	Parent=Os01t0605400-00
Chr01	irgsp1_rep	CDS	23848629	23848814	.	+	2	Parent=Os01t0605400-00
Chr01	irgsp1_rep	CDS	23849028	23849114	.	+	2	Parent=Os01t0605400-00
Chr01	irgsp1_rep	CDS	23849254	23849286	.	+	2	Parent=Os01t0605400-00
Chr01	irgsp1_rep	CDS	23849514	23849650	.	+	2	Parent=Os01t0605400-00
Chr01	irgsp1_rep	CDS	23849742	23850326	.	+	0	Parent=Os01t0605400-00
Chr01	irgsp1_rep	mRNA	23850922	23854484	.	-	.	ID=Os01t0605500-00;Name=Os01t0605500-00;Locus_id=Os01g0605500;Oryzabase Gene Symbol Synonym(s)=KIF19%2C OsKIF19;Oryzabase Gene Name Synonym(s)=Kinesin-like protein KIF19;Note=Kinesin%2C motor region domain containing protein.;Transcript_evidence=tplb0014h14 (Wheat FLcDNA);ORF_evidence=NP_001151509.1 (RefSeq);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752),Kinesin%2C motor region%2C conserved site (IPR019821);Oryzabase=22564;TENOR=Os01t0605500-00;KEGG=Os01t0605500-00
Chr01	irgsp1_rep	CDS	23853655	23854484	.	-	0	Parent=Os01t0605500-00
Chr01	irgsp1_rep	CDS	23852920	23853193	.	-	1	Parent=Os01t0605500-00
Chr01	irgsp1_rep	CDS	23852709	23852759	.	-	0	Parent=Os01t0605500-00
Chr01	irgsp1_rep	CDS	23852522	23852614	.	-	0	Parent=Os01t0605500-00
Chr01	irgsp1_rep	CDS	23852067	23852429	.	-	0	Parent=Os01t0605500-00
Chr01	irgsp1_rep	CDS	23851286	23851972	.	-	0	Parent=Os01t0605500-00
Chr01	irgsp1_rep	CDS	23851144	23851176	.	-	0	Parent=Os01t0605500-00
Chr01	irgsp1_rep	three_prime_UTR	23850922	23851143	.	-	.	Parent=Os01t0605500-00
Chr01	irgsp1_rep	mRNA	23856793	23861718	.	+	.	ID=Os01t0605650-01;Name=Os01t0605650-01;Locus_id=Os01g0605650;Note=Zinc finger%2C C3HC-like domain containing protein.;Transcript_evidence=AK240857 (DDBJ%2C Best hit);ORF_evidence=Q5ZD97 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C3HC-like (IPR012935);NIAS_FLcDNA=J065022D17;TENOR=Os01t0605650-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	23856793	23857031	.	+	0	Parent=Os01t0605650-01
Chr01	irgsp1_rep	CDS	23857142	23857334	.	+	1	Parent=Os01t0605650-01
Chr01	irgsp1_rep	CDS	23857799	23857922	.	+	0	Parent=Os01t0605650-01
Chr01	irgsp1_rep	CDS	23858174	23858526	.	+	2	Parent=Os01t0605650-01
Chr01	irgsp1_rep	CDS	23859414	23860419	.	+	0	Parent=Os01t0605650-01
Chr01	irgsp1_rep	CDS	23860781	23860974	.	+	2	Parent=Os01t0605650-01
Chr01	irgsp1_rep	CDS	23861127	23861213	.	+	0	Parent=Os01t0605650-01
Chr01	irgsp1_rep	three_prime_UTR	23861214	23861718	.	+	.	Parent=Os01t0605650-01
Chr01	irgsp1_rep	mRNA	23864681	23867205	.	+	.	ID=Os01t0605700-01;Name=Os01t0605700-01;Locus_id=Os01g0605700;CGSNL Gene Symbol=SWEET6B;CGSNL Gene Name=SWEET6B;Oryzabase Gene Symbol Synonym(s)=OsSWEET6b%2C SWEET6b;Note=MtN3 and saliva related transmembrane protein family protein.;Transcript_evidence=AK099440 (DDBJ%2C Best hit);ORF_evidence=Q8W0K2 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=RAG1-activating protein-1-related (IPR004316);NIAS_FLcDNA=J013020J10;Oryzabase=9097;Expression=AK099440;TENOR=Os01t0605700-01;KEGG=Os01t0605700-01
Chr01	irgsp1_rep	five_prime_UTR	23864681	23864745	.	+	.	Parent=Os01t0605700-01
Chr01	irgsp1_rep	CDS	23864746	23864825	.	+	0	Parent=Os01t0605700-01
Chr01	irgsp1_rep	CDS	23864946	23865162	.	+	1	Parent=Os01t0605700-01
Chr01	irgsp1_rep	CDS	23865277	23865438	.	+	0	Parent=Os01t0605700-01
Chr01	irgsp1_rep	CDS	23866739	23867044	.	+	0	Parent=Os01t0605700-01
Chr01	irgsp1_rep	three_prime_UTR	23867045	23867205	.	+	.	Parent=Os01t0605700-01
Chr01	irgsp1_rep	mRNA	23877540	23880467	.	+	.	ID=Os01t0606000-00;Name=Os01t0606000-00;Locus_id=Os01g0606000;CGSNL Gene Symbol=SWEET6A;CGSNL Gene Name=SWEET6A;Oryzabase Gene Symbol Synonym(s)=OsSWEET6a%2C SWEET6a;Note=MtN3 and saliva related transmembrane protein family protein.;Transcript_evidence=CT841918 (DDBJ%2C Best hit);ORF_evidence=Q8LR09 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=RAG1-activating protein-1-related (IPR004316);Oryzabase=9096;TENOR=Os01t0606000-00;KEGG=Os01t0606000-00
Chr01	irgsp1_rep	five_prime_UTR	23877540	23877623	.	+	.	Parent=Os01t0606000-00
Chr01	irgsp1_rep	CDS	23877624	23877703	.	+	0	Parent=Os01t0606000-00
Chr01	irgsp1_rep	CDS	23877821	23878037	.	+	1	Parent=Os01t0606000-00
Chr01	irgsp1_rep	CDS	23878148	23878309	.	+	0	Parent=Os01t0606000-00
Chr01	irgsp1_rep	CDS	23879926	23880246	.	+	0	Parent=Os01t0606000-00
Chr01	irgsp1_rep	three_prime_UTR	23880247	23880467	.	+	.	Parent=Os01t0606000-00
Chr01	irgsp1_rep	mRNA	23883251	23884244	.	+	.	ID=Os01t0606050-00;Name=Os01t0606050-00;Locus_id=Os01g0606050;Note=Similar to T15D22.3.;Transcript_evidence=DQ244729 (DDBJ);ORF_evidence=Q9M9Q7 (UniProt);TENOR=Os01t0606050-00;KEGG=Os01t0606050-00
Chr01	irgsp1_rep	five_prime_UTR	23883251	23883269	.	+	.	Parent=Os01t0606050-00
Chr01	irgsp1_rep	CDS	23883270	23883388	.	+	0	Parent=Os01t0606050-00
Chr01	irgsp1_rep	CDS	23883481	23883562	.	+	1	Parent=Os01t0606050-00
Chr01	irgsp1_rep	CDS	23883703	23883819	.	+	0	Parent=Os01t0606050-00
Chr01	irgsp1_rep	CDS	23883983	23884033	.	+	0	Parent=Os01t0606050-00
Chr01	irgsp1_rep	three_prime_UTR	23884034	23884042	.	+	.	Parent=Os01t0606050-00
Chr01	irgsp1_rep	three_prime_UTR	23884110	23884244	.	+	.	Parent=Os01t0606050-00
Chr01	irgsp1_rep	mRNA	23886851	23888222	.	-	.	ID=Os01t0606133-00;Name=Os01t0606133-00;Locus_id=Os01g0606133;Note=Hypothetical conserved gene.;Transcript_evidence=CT834773 (DDBJ%2C Best hit);ORF_evidence=NP_001043524.2 (RefSeq);InterPro=Six-bladed beta-propeller%2C TolB-like (IPR011042);TENOR=Os01t0606133-00;KEGG=Os01t0606133-00
Chr01	irgsp1_rep	five_prime_UTR	23888188	23888222	.	-	.	Parent=Os01t0606133-00
Chr01	irgsp1_rep	CDS	23887189	23888187	.	-	0	Parent=Os01t0606133-00
Chr01	irgsp1_rep	three_prime_UTR	23886851	23887188	.	-	.	Parent=Os01t0606133-00
Chr01	irgsp1_rep	mRNA	23886901	23888225	.	+	.	ID=Os01t0606166-01;Name=Os01t0606166-01;Locus_id=Os01g0606166;Note=Conserved hypothetical protein.;Transcript_evidence=AK287778 (DDBJ%2C Best hit);ORF_evidence=C0P8D0 (UniProt);NIAS_FLcDNA=J065171D11;TENOR=Os01t0606166-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	23886901	23887207	.	+	.	Parent=Os01t0606166-01
Chr01	irgsp1_rep	CDS	23887208	23887759	.	+	0	Parent=Os01t0606166-01
Chr01	irgsp1_rep	three_prime_UTR	23887760	23888225	.	+	.	Parent=Os01t0606166-01
Chr01	irgsp1_rep	mRNA	23890258	23890668	.	-	.	ID=Os01t0606200-00;Name=Os01t0606200-00;Locus_id=Os01g0606200;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001043525.1 (RefSeq);TENOR=Os01t0606200-00;KEGG=Os01t0606200-00
Chr01	irgsp1_rep	CDS	23890605	23890668	.	-	0	Parent=Os01t0606200-00
Chr01	irgsp1_rep	CDS	23890258	23890481	.	-	2	Parent=Os01t0606200-00
Chr01	irgsp1_rep	mRNA	23895058	23897435	.	+	.	ID=Os01t0606400-01;Name=Os01t0606400-01;Locus_id=Os01g0606400;Note=Hypothetical protein.;Transcript_evidence=AK070799 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023067J20;Expression=AK070799;TENOR=Os01t0606400-01;KEGG=Os01t0606400-01
Chr01	irgsp1_rep	five_prime_UTR	23895058	23896673	.	+	.	Parent=Os01t0606400-01
Chr01	irgsp1_rep	CDS	23896674	23896931	.	+	0	Parent=Os01t0606400-01
Chr01	irgsp1_rep	three_prime_UTR	23896932	23897435	.	+	.	Parent=Os01t0606400-01
Chr01	irgsp1_rep	mRNA	23911517	23913239	.	+	.	ID=Os01t0606900-01;Name=Os01t0606900-01;Locus_id=Os01g0606900;CGSNL Gene Symbol=BPH33;CGSNL Gene Name=BROWN PLANTHOPPER RESISTANCE 33;Oryzabase Gene Symbol Synonym(s)=OsDjC10%2C DjC10%2C Bph33(t)%2C Bph33;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C10;Note=Heat shock protein DnaJ%2C N-terminal domain containing protein.;Transcript_evidence=AK065697 (DDBJ%2C Best hit);ORF_evidence=NP_001151849.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=J013037L21;Oryzabase=12167;Expression=AK065697;TENOR=Os01t0606900-01;KEGG=Os01t0606900-01
Chr01	irgsp1_rep	five_prime_UTR	23911517	23911725	.	+	.	Parent=Os01t0606900-01
Chr01	irgsp1_rep	CDS	23911726	23911845	.	+	0	Parent=Os01t0606900-01
Chr01	irgsp1_rep	CDS	23911966	23912053	.	+	0	Parent=Os01t0606900-01
Chr01	irgsp1_rep	CDS	23912171	23912253	.	+	2	Parent=Os01t0606900-01
Chr01	irgsp1_rep	CDS	23912376	23912432	.	+	0	Parent=Os01t0606900-01
Chr01	irgsp1_rep	CDS	23912583	23912828	.	+	0	Parent=Os01t0606900-01
Chr01	irgsp1_rep	three_prime_UTR	23912829	23913239	.	+	.	Parent=Os01t0606900-01
Chr01	irgsp1_rep	mRNA	23914150	23914856	.	+	.	ID=Os01t0607000-01;Name=Os01t0607000-01;Locus_id=Os01g0607000;Note=Glutelin family protein.;Transcript_evidence=AK105136 (DDBJ%2C Best hit);ORF_evidence=B9EXZ4 (UniProt);NIAS_FLcDNA=001-102-A11;Expression=AK105136;TENOR=Os01t0607000-01;KEGG=Os01t0607000-01
Chr01	irgsp1_rep	five_prime_UTR	23914150	23914185	.	+	.	Parent=Os01t0607000-01
Chr01	irgsp1_rep	CDS	23914186	23914689	.	+	0	Parent=Os01t0607000-01
Chr01	irgsp1_rep	three_prime_UTR	23914690	23914856	.	+	.	Parent=Os01t0607000-01
Chr01	irgsp1_rep	mRNA	23919214	23921302	.	+	.	ID=Os01t0607100-00;Name=Os01t0607100-00;Locus_id=Os01g0607100;CGSNL Gene Symbol=AGP29;CGSNL Gene Name=ARABINOGALACTAN PROTEIN 29;Oryzabase Gene Symbol Synonym(s)=OsAGP29;Oryzabase Gene Name Synonym(s)=Arabinogalactan protein 29;Note=Bifunctional inhibitor/plant lipid transfer protein/seed storage domain containing protein.;Transcript_evidence=AK359029 (DDBJ);ORF_evidence=B8ABJ4 (UniProt);InterPro=Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);Oryzabase=11322;TENOR=Os01t0607100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	23919214	23919787	.	+	0	Parent=Os01t0607100-00
Chr01	irgsp1_rep	CDS	23920443	23920508	.	+	2	Parent=Os01t0607100-00
Chr01	irgsp1_rep	CDS	23920963	23921129	.	+	2	Parent=Os01t0607100-00
Chr01	irgsp1_rep	three_prime_UTR	23921130	23921302	.	+	.	Parent=Os01t0607100-00
Chr01	irgsp1_rep	mRNA	23923718	23933449	.	+	.	ID=Os01t0607200-01;Name=Os01t0607200-01;Locus_id=Os01g0607200;Oryzabase Gene Symbol Synonym(s)=OsBAT1;Oryzabase Gene Name Synonym(s)=bi-directional amino acid transporter 1;Note=Amino acid permease subfamily protein.;Transcript_evidence=AK071623 (DDBJ%2C Best hit);ORF_evidence=NP_565254.1 (RefSeq);GO=Biological Process: amino acid transmembrane transport (GO:0003333),Biological Process: transport (GO:0006810),Biological Process: amino acid transport (GO:0006865),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: amino acid transmembrane transporter activity (GO:0015171);InterPro=Amino acid/polyamine transporter I (IPR002293),Amino acid permease subfamily (IPR004756),Amino acid permease%2C conserved site (IPR004840),Amino acid permease domain (IPR004841);NIAS_FLcDNA=J023104K01;Oryzabase=18546;Expression=AK071623;TENOR=Os01t0607200-01;KEGG=Os01t0607200-01
Chr01	irgsp1_rep	five_prime_UTR	23923718	23923798	.	+	.	Parent=Os01t0607200-01
Chr01	irgsp1_rep	CDS	23923799	23923944	.	+	0	Parent=Os01t0607200-01
Chr01	irgsp1_rep	CDS	23924927	23925190	.	+	1	Parent=Os01t0607200-01
Chr01	irgsp1_rep	CDS	23931320	23931338	.	+	1	Parent=Os01t0607200-01
Chr01	irgsp1_rep	CDS	23931415	23931634	.	+	0	Parent=Os01t0607200-01
Chr01	irgsp1_rep	CDS	23931760	23931941	.	+	2	Parent=Os01t0607200-01
Chr01	irgsp1_rep	CDS	23932047	23932336	.	+	0	Parent=Os01t0607200-01
Chr01	irgsp1_rep	CDS	23932510	23932639	.	+	1	Parent=Os01t0607200-01
Chr01	irgsp1_rep	CDS	23932777	23933124	.	+	0	Parent=Os01t0607200-01
Chr01	irgsp1_rep	three_prime_UTR	23933125	23933449	.	+	.	Parent=Os01t0607200-01
Chr01	irgsp1_rep	mRNA	23929691	23933449	.	+	.	ID=Os01t0607200-02;Name=Os01t0607200-02;Locus_id=Os01g0607200;Oryzabase Gene Symbol Synonym(s)=OsBAT1;Oryzabase Gene Name Synonym(s)=bi-directional amino acid transporter 1;Note=Similar to amino acid permease family protein.;Transcript_evidence=AK105656 (DDBJ%2C Best hit);ORF_evidence=NP_565254.1 (RefSeq);GO=Biological Process: amino acid transmembrane transport (GO:0003333),Biological Process: transport (GO:0006810),Biological Process: amino acid transport (GO:0006865),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: amino acid transmembrane transporter activity (GO:0015171);InterPro=Amino acid/polyamine transporter I (IPR002293),Amino acid permease subfamily (IPR004756),Amino acid permease domain (IPR004841);NIAS_FLcDNA=001-200-G07;Oryzabase=18546;Expression=AK105656;TENOR=Os01t0607200-02;KEGG=Os01t0607200-02
Chr01	irgsp1_rep	five_prime_UTR	23929691	23929801	.	+	.	Parent=Os01t0607200-02
Chr01	irgsp1_rep	CDS	23929802	23929914	.	+	0	Parent=Os01t0607200-02
Chr01	irgsp1_rep	CDS	23930017	23930277	.	+	1	Parent=Os01t0607200-02
Chr01	irgsp1_rep	CDS	23931320	23931338	.	+	1	Parent=Os01t0607200-02
Chr01	irgsp1_rep	CDS	23931415	23931634	.	+	0	Parent=Os01t0607200-02
Chr01	irgsp1_rep	CDS	23931760	23931941	.	+	2	Parent=Os01t0607200-02
Chr01	irgsp1_rep	CDS	23932047	23932336	.	+	0	Parent=Os01t0607200-02
Chr01	irgsp1_rep	CDS	23932510	23932639	.	+	1	Parent=Os01t0607200-02
Chr01	irgsp1_rep	CDS	23932777	23933124	.	+	0	Parent=Os01t0607200-02
Chr01	irgsp1_rep	three_prime_UTR	23933125	23933449	.	+	.	Parent=Os01t0607200-02
Chr01	irgsp1_rep	mRNA	23929777	23933117	.	-	.	ID=Os01t0607250-00;Name=Os01t0607250-00;Locus_id=Os01g0607250;Note=Hypothetical protein.;Transcript_evidence=tplb0051k23 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0607250-00
Chr01	irgsp1_rep	five_prime_UTR	23933116	23933117	.	-	.	Parent=Os01t0607250-00
Chr01	irgsp1_rep	CDS	23932763	23933115	.	-	0	Parent=Os01t0607250-00
Chr01	irgsp1_rep	CDS	23932621	23932621	.	-	1	Parent=Os01t0607250-00
Chr01	irgsp1_rep	three_prime_UTR	23932493	23932620	.	-	.	Parent=Os01t0607250-00
Chr01	irgsp1_rep	three_prime_UTR	23932046	23932315	.	-	.	Parent=Os01t0607250-00
Chr01	irgsp1_rep	three_prime_UTR	23931716	23931940	.	-	.	Parent=Os01t0607250-00
Chr01	irgsp1_rep	three_prime_UTR	23931404	23931596	.	-	.	Parent=Os01t0607250-00
Chr01	irgsp1_rep	three_prime_UTR	23929996	23930284	.	-	.	Parent=Os01t0607250-00
Chr01	irgsp1_rep	three_prime_UTR	23929777	23929897	.	-	.	Parent=Os01t0607250-00
Chr01	irgsp1_rep	mRNA	23934148	23937209	.	+	.	ID=Os01t0607300-01;Name=Os01t0607300-01;Locus_id=Os01g0607300;Note=Small ubiquitin-related modifier%2C SUMO domain containing protein.;Transcript_evidence=AK109289 (DDBJ%2C Best hit);ORF_evidence=B9EXZ7 (UniProt);InterPro=Small ubiquitin-related modifier%2C SUMO (IPR022617);NIAS_FLcDNA=002-188-C07;Expression=AK109289;TENOR=Os01t0607300-01;KEGG=Os01t0607300-01
Chr01	irgsp1_rep	five_prime_UTR	23934148	23934343	.	+	.	Parent=Os01t0607300-01
Chr01	irgsp1_rep	CDS	23934344	23934346	.	+	0	Parent=Os01t0607300-01
Chr01	irgsp1_rep	CDS	23934432	23934525	.	+	0	Parent=Os01t0607300-01
Chr01	irgsp1_rep	CDS	23934653	23934738	.	+	2	Parent=Os01t0607300-01
Chr01	irgsp1_rep	CDS	23934819	23934970	.	+	0	Parent=Os01t0607300-01
Chr01	irgsp1_rep	CDS	23936164	23936371	.	+	1	Parent=Os01t0607300-01
Chr01	irgsp1_rep	CDS	23936697	23936864	.	+	0	Parent=Os01t0607300-01
Chr01	irgsp1_rep	three_prime_UTR	23936865	23937209	.	+	.	Parent=Os01t0607300-01
Chr01	irgsp1_rep	mRNA	23938399	23949885	.	-	.	ID=Os01t0607400-01;Name=Os01t0607400-01;Locus_id=Os01g0607400;RAP-DB Gene Symbol Synonym(s)=OsLUGL%2C OsKKX;RAP-DB Gene Name Synonym(s)=LEUNIG-like%2C KAIKOUXIAO;Oryzabase Gene Symbol Synonym(s)=OsWD40-17%2C OsLUGL%2C LUGL%2C KKX%2C OsKKX;Oryzabase Gene Name Synonym(s)=LEUNIG-like transcriptional regulator%2C KAIKOUXIAO%2C LEUNIG-like%2C LEUNIG;Note=LEUNIG-like (LUGL) transcriptional regulator%2C Regulation of floral organ development;Transcript_evidence=AK101152;ORF_evidence=Q5ZBP7;GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40/YVTN repeat-like-containing domain superfamily (IPR015943),WD40-repeat-containing domain superfamily (IPR036322),LIS1 homology motif (IPR006594),WD40-repeat-containing domain (IPR017986),WD40 repeat (IPR001680),WD40 repeat%2C conserved site (IPR019775);NIAS_FLcDNA=J033027C19;Manual Curation=September 18%2C 2019;Literature_PMID=31521225;Oryzabase=10698;Expression=AK101152;TENOR=Os01t0607400-01;KEGG=Os01t0607400-01;Subcellular location=nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	23949600	23949885	.	-	.	Parent=Os01t0607400-01
Chr01	irgsp1_rep	CDS	23949568	23949599	.	-	0	Parent=Os01t0607400-01
Chr01	irgsp1_rep	CDS	23947023	23947120	.	-	1	Parent=Os01t0607400-01
Chr01	irgsp1_rep	CDS	23946798	23946907	.	-	2	Parent=Os01t0607400-01
Chr01	irgsp1_rep	CDS	23945772	23946137	.	-	0	Parent=Os01t0607400-01
Chr01	irgsp1_rep	CDS	23945578	23945660	.	-	0	Parent=Os01t0607400-01
Chr01	irgsp1_rep	CDS	23944937	23945024	.	-	1	Parent=Os01t0607400-01
Chr01	irgsp1_rep	CDS	23944735	23944810	.	-	0	Parent=Os01t0607400-01
Chr01	irgsp1_rep	CDS	23944526	23944575	.	-	2	Parent=Os01t0607400-01
Chr01	irgsp1_rep	CDS	23943550	23943834	.	-	0	Parent=Os01t0607400-01
Chr01	irgsp1_rep	CDS	23942873	23943064	.	-	0	Parent=Os01t0607400-01
Chr01	irgsp1_rep	CDS	23942086	23942316	.	-	0	Parent=Os01t0607400-01
Chr01	irgsp1_rep	CDS	23941169	23941286	.	-	0	Parent=Os01t0607400-01
Chr01	irgsp1_rep	CDS	23940756	23940865	.	-	2	Parent=Os01t0607400-01
Chr01	irgsp1_rep	CDS	23940527	23940679	.	-	0	Parent=Os01t0607400-01
Chr01	irgsp1_rep	CDS	23939998	23940162	.	-	0	Parent=Os01t0607400-01
Chr01	irgsp1_rep	CDS	23939782	23939901	.	-	0	Parent=Os01t0607400-01
Chr01	irgsp1_rep	CDS	23938871	23939077	.	-	0	Parent=Os01t0607400-01
Chr01	irgsp1_rep	CDS	23938636	23938782	.	-	0	Parent=Os01t0607400-01
Chr01	irgsp1_rep	three_prime_UTR	23938399	23938635	.	-	.	Parent=Os01t0607400-01
Chr01	irgsp1_rep	mRNA	23938395	23943781	.	-	.	ID=Os01t0607400-02;Name=Os01t0607400-02;Locus_id=Os01g0607400;Oryzabase Gene Symbol Synonym(s)=OsWD40-17%2C OsLUGL%2C LUGL%2C KKX%2C OsKKX;Oryzabase Gene Name Synonym(s)=LEUNIG-like transcriptional regulator%2C KAIKOUXIAO%2C LEUNIG-like%2C LEUNIG;Note=Similar to STYLOSA protein.;Transcript_evidence=AK105049 (DDBJ%2C Best hit);ORF_evidence=Q6H976 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=001-041-F06;Oryzabase=10698;TENOR=Os01t0607400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	23943724	23943781	.	-	.	Parent=Os01t0607400-02
Chr01	irgsp1_rep	CDS	23943550	23943723	.	-	0	Parent=Os01t0607400-02
Chr01	irgsp1_rep	CDS	23942873	23943064	.	-	0	Parent=Os01t0607400-02
Chr01	irgsp1_rep	CDS	23942086	23942316	.	-	0	Parent=Os01t0607400-02
Chr01	irgsp1_rep	CDS	23941169	23941286	.	-	0	Parent=Os01t0607400-02
Chr01	irgsp1_rep	CDS	23940756	23940865	.	-	2	Parent=Os01t0607400-02
Chr01	irgsp1_rep	CDS	23940527	23940679	.	-	0	Parent=Os01t0607400-02
Chr01	irgsp1_rep	CDS	23939998	23940162	.	-	0	Parent=Os01t0607400-02
Chr01	irgsp1_rep	CDS	23939782	23939901	.	-	0	Parent=Os01t0607400-02
Chr01	irgsp1_rep	CDS	23938871	23939077	.	-	0	Parent=Os01t0607400-02
Chr01	irgsp1_rep	CDS	23938636	23938782	.	-	0	Parent=Os01t0607400-02
Chr01	irgsp1_rep	three_prime_UTR	23938395	23938635	.	-	.	Parent=Os01t0607400-02
Chr01	irgsp1_rep	mRNA	23947829	23962251	.	-	.	ID=Os01t0607600-00;Name=Os01t0607600-00;Locus_id=Os01g0607600;Oryzabase Gene Symbol Synonym(s)=OsWD40-18%2C WD40-18%2C LUG%2C DLN14%2C OsDLN14;Oryzabase Gene Name Synonym(s)=transcriptional corepressor LEUNIG%2C LEUNIG%2C DLN repressor 14%2C DLN motif protein 14;Note=WD40 repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9EXZ9 (UniProt);GO=Molecular Function: single-stranded DNA binding (GO:0003697),Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),LisH dimerisation motif (IPR006594),Sequence-specific single-strand DNA-binding protein (IPR008116),WD40 repeat-like-containing domain (IPR011046),LisH dimerisation motif%2C subgroup (IPR013720),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);Oryzabase=10699;TENOR=Os01t0607600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	23962202	23962251	.	-	0	Parent=Os01t0607600-00
Chr01	irgsp1_rep	CDS	23961699	23961796	.	-	1	Parent=Os01t0607600-00
Chr01	irgsp1_rep	CDS	23961373	23961482	.	-	2	Parent=Os01t0607600-00
Chr01	irgsp1_rep	CDS	23960089	23960418	.	-	0	Parent=Os01t0607600-00
Chr01	irgsp1_rep	CDS	23959899	23959990	.	-	0	Parent=Os01t0607600-00
Chr01	irgsp1_rep	CDS	23959285	23959372	.	-	1	Parent=Os01t0607600-00
Chr01	irgsp1_rep	CDS	23959102	23959177	.	-	0	Parent=Os01t0607600-00
Chr01	irgsp1_rep	CDS	23958819	23958868	.	-	2	Parent=Os01t0607600-00
Chr01	irgsp1_rep	CDS	23957528	23957797	.	-	0	Parent=Os01t0607600-00
Chr01	irgsp1_rep	CDS	23956234	23956413	.	-	0	Parent=Os01t0607600-00
Chr01	irgsp1_rep	CDS	23955486	23955716	.	-	0	Parent=Os01t0607600-00
Chr01	irgsp1_rep	CDS	23955290	23955407	.	-	0	Parent=Os01t0607600-00
Chr01	irgsp1_rep	CDS	23954517	23954563	.	-	2	Parent=Os01t0607600-00
Chr01	irgsp1_rep	CDS	23954233	23954382	.	-	0	Parent=Os01t0607600-00
Chr01	irgsp1_rep	CDS	23953754	23953873	.	-	0	Parent=Os01t0607600-00
Chr01	irgsp1_rep	CDS	23953250	23953330	.	-	0	Parent=Os01t0607600-00
Chr01	irgsp1_rep	CDS	23952920	23953030	.	-	0	Parent=Os01t0607600-00
Chr01	irgsp1_rep	CDS	23947829	23947975	.	-	0	Parent=Os01t0607600-00
Chr01	irgsp1_rep	mRNA	23970594	23971698	.	+	.	ID=Os01t0607800-01;Name=Os01t0607800-01;Locus_id=Os01g0607800;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK062372 (DDBJ%2C Best hit);ORF_evidence=A2ZV92 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-102-A08;Expression=AK062372;TENOR=Os01t0607800-01;KEGG=Os01t0607800-01
Chr01	irgsp1_rep	CDS	23970594	23971607	.	+	0	Parent=Os01t0607800-01
Chr01	irgsp1_rep	three_prime_UTR	23971608	23971698	.	+	.	Parent=Os01t0607800-01
Chr01	irgsp1_rep	mRNA	23971222	23972310	.	+	.	ID=Os01t0607800-02;Name=Os01t0607800-02;Locus_id=Os01g0607800;Note=Hypothetical conserved gene.;Transcript_evidence=AK058392 (DDBJ%2C Best hit);ORF_evidence=A2ZV92 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=001-015-A08;Expression=AK058392;TENOR=Os01t0607800-02;KEGG=Os01t0607800-02
Chr01	irgsp1_rep	five_prime_UTR	23971222	23971223	.	+	.	Parent=Os01t0607800-02
Chr01	irgsp1_rep	CDS	23971224	23971607	.	+	0	Parent=Os01t0607800-02
Chr01	irgsp1_rep	three_prime_UTR	23971608	23972310	.	+	.	Parent=Os01t0607800-02
Chr01	irgsp1_rep	mRNA	23976021	23981901	.	-	.	ID=Os01t0607900-01;Name=Os01t0607900-01;Locus_id=Os01g0607900;Oryzabase Gene Symbol Synonym(s)=OsRPK1%2C OsJNipponRPK1%2C OsI219RPK1%2C OsI9311RPK1;Oryzabase Gene Name Synonym(s)=receptor-like protein kinase 1;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK243570 (DDBJ%2C Best hit);ORF_evidence=D6N3G3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J100082A19;Oryzabase=11292;TENOR=Os01t0607900-01;KEGG=Os01t0607900-01
Chr01	irgsp1_rep	five_prime_UTR	23981788	23981901	.	-	.	Parent=Os01t0607900-01
Chr01	irgsp1_rep	CDS	23980398	23981787	.	-	0	Parent=Os01t0607900-01
Chr01	irgsp1_rep	CDS	23976377	23977041	.	-	2	Parent=Os01t0607900-01
Chr01	irgsp1_rep	three_prime_UTR	23976021	23976376	.	-	.	Parent=Os01t0607900-01
Chr01	irgsp1_rep	mRNA	24004148	24006633	.	-	.	ID=Os01t0608000-01;Name=Os01t0608000-01;Locus_id=Os01g0608000;Note=Hypothetical conserved gene.;Transcript_evidence=AK241110 (DDBJ%2C Best hit);ORF_evidence=Q6K2X8 (UniProt);NIAS_FLcDNA=J065090O14;TENOR=Os01t0608000-01;KEGG=Os01t0608000-01
Chr01	irgsp1_rep	five_prime_UTR	24005125	24006633	.	-	.	Parent=Os01t0608000-01
Chr01	irgsp1_rep	five_prime_UTR	24004238	24004344	.	-	.	Parent=Os01t0608000-01
Chr01	irgsp1_rep	CDS	24004148	24004237	.	-	0	Parent=Os01t0608000-01
Chr01	irgsp1_rep	mRNA	24004176	24006793	.	+	.	ID=Os01t0608101-00;Name=Os01t0608101-00;Locus_id=Os01g0608101;Note=Conserved hypothetical protein.;Transcript_evidence=CT834902 (DDBJ%2C Best hit);ORF_evidence=NP_001172458.1 (RefSeq);TENOR=Os01t0608101-00;KEGG=Os01t0608101-00
Chr01	irgsp1_rep	five_prime_UTR	24004176	24004344	.	+	.	Parent=Os01t0608101-00
Chr01	irgsp1_rep	five_prime_UTR	24005125	24005822	.	+	.	Parent=Os01t0608101-00
Chr01	irgsp1_rep	CDS	24005823	24005972	.	+	0	Parent=Os01t0608101-00
Chr01	irgsp1_rep	three_prime_UTR	24005973	24006793	.	+	.	Parent=Os01t0608101-00
Chr01	irgsp1_rep	mRNA	24018683	24019797	.	-	.	ID=Os01t0608200-00;Name=Os01t0608200-00;Locus_id=Os01g0608200;Note=Hypothetical protein.;Transcript_evidence=EU947645 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0608200-00
Chr01	irgsp1_rep	CDS	24018685	24019797	.	-	0	Parent=Os01t0608200-00
Chr01	irgsp1_rep	three_prime_UTR	24018683	24018684	.	-	.	Parent=Os01t0608200-00
Chr01	irgsp1_rep	mRNA	24018634	24020111	.	+	.	ID=Os01t0608300-00;Name=Os01t0608300-00;Locus_id=Os01g0608300;Note=Similar to aspartic proteinase nepenthesin-2.;Transcript_evidence=BT038626 (DDBJ);ORF_evidence=NP_001150335.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);TENOR=Os01t0608300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	24018634	24019158	.	+	0	Parent=Os01t0608300-00
Chr01	irgsp1_rep	CDS	24019239	24020111	.	+	0	Parent=Os01t0608300-00
Chr01	irgsp1_rep	mRNA	24024938	24027535	.	-	.	ID=Os01t0608400-00;Name=Os01t0608400-00;Locus_id=Os01g0608400;Note=Hypothetical conserved gene.;Transcript_evidence=EU968068 (DDBJ);ORF_evidence=Q5ZCK2 (UniProt);TENOR=Os01t0608400-00;KEGG=Os01t0608400-00
Chr01	irgsp1_rep	CDS	24027195	24027535	.	-	0	Parent=Os01t0608400-00
Chr01	irgsp1_rep	CDS	24026807	24027053	.	-	1	Parent=Os01t0608400-00
Chr01	irgsp1_rep	three_prime_UTR	24026607	24026806	.	-	.	Parent=Os01t0608400-00
Chr01	irgsp1_rep	three_prime_UTR	24024938	24025695	.	-	.	Parent=Os01t0608400-00
Chr01	irgsp1_rep	mRNA	24046289	24048765	.	+	.	ID=Os01t0608900-01;Name=Os01t0608900-01;Locus_id=Os01g0608900;Note=Hypothetical gene.;Transcript_evidence=AK103201 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033122B04;Expression=AK103201;TENOR=Os01t0608900-01;KEGG=Os01t0608900-01
Chr01	irgsp1_rep	five_prime_UTR	24046289	24046289	.	+	.	Parent=Os01t0608900-01
Chr01	irgsp1_rep	CDS	24046290	24046598	.	+	0	Parent=Os01t0608900-01
Chr01	irgsp1_rep	three_prime_UTR	24046599	24048765	.	+	.	Parent=Os01t0608900-01
Chr01	irgsp1_rep	mRNA	24047446	24055918	.	-	.	ID=Os01t0609000-00;Name=Os01t0609000-00;Locus_id=Os01g0609000;CGSNL Gene Symbol=PDR10;CGSNL Gene Name=PLEIOTROPIC DRUG RESISTANCE 10;Oryzabase Gene Symbol Synonym(s)=OsABCG34%2C OsPDR10%2C OsPDR1;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 34%2C pleiotropic drug resistance 10%2C pleiotropic drug resistance 1;Note=Similar to Pleiotropic drug resistance protein 3.;Transcript_evidence=AK335724 (DDBJ);ORF_evidence=Q0JLC5 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC-2 type transporter (IPR013525),Plant PDR ABC transporter associated (IPR013581);Oryzabase=12010;TENOR=Os01t0609000-00;KEGG=Os01t0609000-00
Chr01	irgsp1_rep	CDS	24055515	24055918	.	-	0	Parent=Os01t0609000-00
Chr01	irgsp1_rep	CDS	24055220	24055429	.	-	1	Parent=Os01t0609000-00
Chr01	irgsp1_rep	CDS	24054954	24055035	.	-	1	Parent=Os01t0609000-00
Chr01	irgsp1_rep	CDS	24054081	24054240	.	-	0	Parent=Os01t0609000-00
Chr01	irgsp1_rep	CDS	24053917	24053993	.	-	2	Parent=Os01t0609000-00
Chr01	irgsp1_rep	CDS	24053770	24053823	.	-	0	Parent=Os01t0609000-00
Chr01	irgsp1_rep	CDS	24053588	24053678	.	-	0	Parent=Os01t0609000-00
Chr01	irgsp1_rep	CDS	24053214	24053515	.	-	2	Parent=Os01t0609000-00
Chr01	irgsp1_rep	CDS	24052855	24053136	.	-	0	Parent=Os01t0609000-00
Chr01	irgsp1_rep	CDS	24052445	24052761	.	-	0	Parent=Os01t0609000-00
Chr01	irgsp1_rep	CDS	24052194	24052354	.	-	1	Parent=Os01t0609000-00
Chr01	irgsp1_rep	CDS	24051365	24051631	.	-	2	Parent=Os01t0609000-00
Chr01	irgsp1_rep	CDS	24050891	24051135	.	-	2	Parent=Os01t0609000-00
Chr01	irgsp1_rep	CDS	24050460	24050792	.	-	0	Parent=Os01t0609000-00
Chr01	irgsp1_rep	CDS	24050091	24050381	.	-	0	Parent=Os01t0609000-00
Chr01	irgsp1_rep	CDS	24049797	24049880	.	-	0	Parent=Os01t0609000-00
Chr01	irgsp1_rep	CDS	24049577	24049710	.	-	0	Parent=Os01t0609000-00
Chr01	irgsp1_rep	CDS	24048506	24048733	.	-	1	Parent=Os01t0609000-00
Chr01	irgsp1_rep	CDS	24048248	24048419	.	-	1	Parent=Os01t0609000-00
Chr01	irgsp1_rep	CDS	24047892	24048146	.	-	0	Parent=Os01t0609000-00
Chr01	irgsp1_rep	CDS	24047544	24047801	.	-	0	Parent=Os01t0609000-00
Chr01	irgsp1_rep	three_prime_UTR	24047446	24047543	.	-	.	Parent=Os01t0609000-00
Chr01	irgsp1_rep	mRNA	24065207	24073621	.	-	.	ID=Os01t0609200-00;Name=Os01t0609200-00;Locus_id=Os01g0609200;CGSNL Gene Symbol=PDR11;CGSNL Gene Name=PLEIOTROPIC DRUG RESISTANCE 11;Oryzabase Gene Symbol Synonym(s)=OsABCG35%2C OsPDR11%2C OsPDR2;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 35%2C pleiotropic drug resistance 11%2C pleiotropic drug resistance 2;Note=Similar to Pleiotropic drug resistance protein 3.;Transcript_evidence=Q8GU92 (UniProt);ORF_evidence=Q8GU92 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC-2 type transporter (IPR013525),Plant PDR ABC transporter associated (IPR013581);Oryzabase=12011;TENOR=Os01t0609200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	24073233	24073621	.	-	0	Parent=Os01t0609200-00
Chr01	irgsp1_rep	CDS	24072918	24073127	.	-	1	Parent=Os01t0609200-00
Chr01	irgsp1_rep	CDS	24072542	24072626	.	-	1	Parent=Os01t0609200-00
Chr01	irgsp1_rep	CDS	24072048	24072207	.	-	0	Parent=Os01t0609200-00
Chr01	irgsp1_rep	CDS	24071852	24071928	.	-	2	Parent=Os01t0609200-00
Chr01	irgsp1_rep	CDS	24071685	24071738	.	-	0	Parent=Os01t0609200-00
Chr01	irgsp1_rep	CDS	24071287	24071377	.	-	0	Parent=Os01t0609200-00
Chr01	irgsp1_rep	CDS	24070913	24071214	.	-	2	Parent=Os01t0609200-00
Chr01	irgsp1_rep	CDS	24070554	24070835	.	-	0	Parent=Os01t0609200-00
Chr01	irgsp1_rep	CDS	24070142	24070458	.	-	0	Parent=Os01t0609200-00
Chr01	irgsp1_rep	CDS	24069886	24070046	.	-	1	Parent=Os01t0609200-00
Chr01	irgsp1_rep	CDS	24069533	24069799	.	-	2	Parent=Os01t0609200-00
Chr01	irgsp1_rep	CDS	24069034	24069278	.	-	2	Parent=Os01t0609200-00
Chr01	irgsp1_rep	CDS	24068602	24068934	.	-	0	Parent=Os01t0609200-00
Chr01	irgsp1_rep	CDS	24067989	24068279	.	-	0	Parent=Os01t0609200-00
Chr01	irgsp1_rep	CDS	24067711	24067794	.	-	0	Parent=Os01t0609200-00
Chr01	irgsp1_rep	CDS	24067490	24067623	.	-	0	Parent=Os01t0609200-00
Chr01	irgsp1_rep	CDS	24066147	24066374	.	-	1	Parent=Os01t0609200-00
Chr01	irgsp1_rep	CDS	24065890	24066061	.	-	1	Parent=Os01t0609200-00
Chr01	irgsp1_rep	CDS	24065553	24065807	.	-	0	Parent=Os01t0609200-00
Chr01	irgsp1_rep	CDS	24065207	24065464	.	-	0	Parent=Os01t0609200-00
Chr01	irgsp1_rep	mRNA	24075070	24081389	.	-	.	ID=Os01t0609300-01;Name=Os01t0609300-01;Locus_id=Os01g0609300;CGSNL Gene Symbol=PDR9;CGSNL Gene Name=PLEIOTROPIC DRUG RESISTANCE 9;Oryzabase Gene Symbol Synonym(s)=OsPDR9%2C ospdr9%2C OsPDR3%2C PDR3%2C OsABCG36/OsPDR9%2C OsABCG36;Oryzabase Gene Name Synonym(s)=pleiotropic drug resistance 9%2C PDR-type ABC transporter 9%2C sativa pleiotropic drug resistance 3%2C pleiotropic drug resistance 3%2C Pleiotropic drug resistance protein 3;Note=Similar to Pleiotropic drug resistance protein 3.;Transcript_evidence=AK100135 (DDBJ%2C Best hit);ORF_evidence=Q0JLC5 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC-2 type transporter (IPR013525),Plant PDR ABC transporter associated (IPR013581);NIAS_FLcDNA=J023010G13;Oryzabase=8341;Expression=AK100135;TENOR=Os01t0609300-01;KEGG=Os01t0609300-01
Chr01	irgsp1_rep	CDS	24081310	24081389	.	-	0	Parent=Os01t0609300-01
Chr01	irgsp1_rep	CDS	24081018	24081102	.	-	1	Parent=Os01t0609300-01
Chr01	irgsp1_rep	CDS	24080589	24080748	.	-	0	Parent=Os01t0609300-01
Chr01	irgsp1_rep	CDS	24080386	24080462	.	-	2	Parent=Os01t0609300-01
Chr01	irgsp1_rep	CDS	24080215	24080268	.	-	0	Parent=Os01t0609300-01
Chr01	irgsp1_rep	CDS	24080036	24080126	.	-	0	Parent=Os01t0609300-01
Chr01	irgsp1_rep	CDS	24079642	24079943	.	-	2	Parent=Os01t0609300-01
Chr01	irgsp1_rep	CDS	24079275	24079556	.	-	0	Parent=Os01t0609300-01
Chr01	irgsp1_rep	CDS	24078867	24079183	.	-	0	Parent=Os01t0609300-01
Chr01	irgsp1_rep	CDS	24078596	24078756	.	-	1	Parent=Os01t0609300-01
Chr01	irgsp1_rep	CDS	24078243	24078509	.	-	2	Parent=Os01t0609300-01
Chr01	irgsp1_rep	CDS	24077905	24078155	.	-	2	Parent=Os01t0609300-01
Chr01	irgsp1_rep	CDS	24077488	24077820	.	-	0	Parent=Os01t0609300-01
Chr01	irgsp1_rep	CDS	24077120	24077410	.	-	0	Parent=Os01t0609300-01
Chr01	irgsp1_rep	CDS	24076894	24076977	.	-	0	Parent=Os01t0609300-01
Chr01	irgsp1_rep	CDS	24076674	24076807	.	-	0	Parent=Os01t0609300-01
Chr01	irgsp1_rep	CDS	24076347	24076574	.	-	1	Parent=Os01t0609300-01
Chr01	irgsp1_rep	CDS	24076098	24076269	.	-	1	Parent=Os01t0609300-01
Chr01	irgsp1_rep	CDS	24075762	24076016	.	-	0	Parent=Os01t0609300-01
Chr01	irgsp1_rep	CDS	24075412	24075669	.	-	0	Parent=Os01t0609300-01
Chr01	irgsp1_rep	three_prime_UTR	24075070	24075411	.	-	.	Parent=Os01t0609300-01
Chr01	irgsp1_rep	mRNA	24075193	24077316	.	-	.	ID=Os01t0609300-02;Name=Os01t0609300-02;Locus_id=Os01g0609300;CGSNL Gene Symbol=PDR9;CGSNL Gene Name=PLEIOTROPIC DRUG RESISTANCE 9;Oryzabase Gene Symbol Synonym(s)=OsPDR9%2C ospdr9%2C OsPDR3%2C PDR3%2C OsABCG36/OsPDR9%2C OsABCG36;Oryzabase Gene Name Synonym(s)=pleiotropic drug resistance 9%2C PDR-type ABC transporter 9%2C sativa pleiotropic drug resistance 3%2C pleiotropic drug resistance 3%2C Pleiotropic drug resistance protein 3;Note=Hypothetical conserved gene.;Transcript_evidence=AK058981 (DDBJ%2C Best hit);ORF_evidence=A2ZV99 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=ABC-2 type transporter (IPR013525);NIAS_FLcDNA=001-020-D12;Oryzabase=8341;Expression=AK058981;TENOR=Os01t0609300-02;KEGG=Os01t0609300-02
Chr01	irgsp1_rep	five_prime_UTR	24077315	24077316	.	-	.	Parent=Os01t0609300-02
Chr01	irgsp1_rep	CDS	24077120	24077314	.	-	0	Parent=Os01t0609300-02
Chr01	irgsp1_rep	CDS	24076894	24076977	.	-	0	Parent=Os01t0609300-02
Chr01	irgsp1_rep	CDS	24076674	24076807	.	-	0	Parent=Os01t0609300-02
Chr01	irgsp1_rep	CDS	24076347	24076574	.	-	1	Parent=Os01t0609300-02
Chr01	irgsp1_rep	CDS	24076098	24076269	.	-	1	Parent=Os01t0609300-02
Chr01	irgsp1_rep	CDS	24075762	24076016	.	-	0	Parent=Os01t0609300-02
Chr01	irgsp1_rep	CDS	24075412	24075669	.	-	0	Parent=Os01t0609300-02
Chr01	irgsp1_rep	three_prime_UTR	24075193	24075411	.	-	.	Parent=Os01t0609300-02
Chr01	irgsp1_rep	mRNA	24080593	24081885	.	+	.	ID=Os01t0609501-00;Name=Os01t0609501-00;Locus_id=Os01g0609501;Note=Hypothetical protein.;Transcript_evidence=BT068271 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0609501-00
Chr01	irgsp1_rep	five_prime_UTR	24080593	24080763	.	+	.	Parent=Os01t0609501-00
Chr01	irgsp1_rep	five_prime_UTR	24081036	24081105	.	+	.	Parent=Os01t0609501-00
Chr01	irgsp1_rep	five_prime_UTR	24081312	24081321	.	+	.	Parent=Os01t0609501-00
Chr01	irgsp1_rep	CDS	24081322	24081543	.	+	0	Parent=Os01t0609501-00
Chr01	irgsp1_rep	CDS	24081645	24081885	.	+	0	Parent=Os01t0609501-00
Chr01	irgsp1_rep	mRNA	24102742	24104421	.	+	.	ID=Os01t0609700-01;Name=Os01t0609700-01;Locus_id=Os01g0609700;Note=Conserved hypothetical protein.;Transcript_evidence=AK109629 (DDBJ%2C Best hit);ORF_evidence=B8ABL0 (UniProt);NIAS_FLcDNA=002-138-C09;Expression=AK109629;TENOR=Os01t0609700-01;KEGG=Os01t0609700-01
Chr01	irgsp1_rep	five_prime_UTR	24102742	24103375	.	+	.	Parent=Os01t0609700-01
Chr01	irgsp1_rep	CDS	24103376	24104353	.	+	0	Parent=Os01t0609700-01
Chr01	irgsp1_rep	three_prime_UTR	24104354	24104421	.	+	.	Parent=Os01t0609700-01
Chr01	irgsp1_rep	mRNA	24107088	24115287	.	-	.	ID=Os01t0609900-01;Name=Os01t0609900-01;Locus_id=Os01g0609900;CGSNL Gene Symbol=PDR8;CGSNL Gene Name=PLEIOTROPIC DRUG RESISTANCE 8;Oryzabase Gene Symbol Synonym(s)=OsPDR8%2C PDR4%2C P0410E03.16%2C OsABCG37%2C OsPDR4;Oryzabase Gene Name Synonym(s)=sativa pleiotropic drug resistance 8%2C Pleiotropic drug resistance protein 4%2C ABC transporter superfamily ABCG subgroup member 37%2C pleiotropic drug resistance 4;Note=Similar to Pleiotropic drug resistance protein 4.;Transcript_evidence=AK121722 (DDBJ%2C Best hit);ORF_evidence=Q8GU89 (UniProt);GO=Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887);InterPro=ABC transporter-like (IPR003439);NIAS_FLcDNA=J033081K15;Oryzabase=8340;Expression=AK121722;TENOR=Os01t0609900-01;KEGG=Os01t0609900-01
Chr01	irgsp1_rep	five_prime_UTR	24115165	24115287	.	-	.	Parent=Os01t0609900-01
Chr01	irgsp1_rep	CDS	24114700	24115164	.	-	0	Parent=Os01t0609900-01
Chr01	irgsp1_rep	CDS	24113211	24113299	.	-	0	Parent=Os01t0609900-01
Chr01	irgsp1_rep	CDS	24112852	24113096	.	-	1	Parent=Os01t0609900-01
Chr01	irgsp1_rep	CDS	24112674	24112750	.	-	2	Parent=Os01t0609900-01
Chr01	irgsp1_rep	CDS	24112455	24112508	.	-	0	Parent=Os01t0609900-01
Chr01	irgsp1_rep	CDS	24112236	24112346	.	-	0	Parent=Os01t0609900-01
Chr01	irgsp1_rep	three_prime_UTR	24111880	24112235	.	-	.	Parent=Os01t0609900-01
Chr01	irgsp1_rep	three_prime_UTR	24111503	24111784	.	-	.	Parent=Os01t0609900-01
Chr01	irgsp1_rep	three_prime_UTR	24111105	24111418	.	-	.	Parent=Os01t0609900-01
Chr01	irgsp1_rep	three_prime_UTR	24110768	24110928	.	-	.	Parent=Os01t0609900-01
Chr01	irgsp1_rep	three_prime_UTR	24110563	24110666	.	-	.	Parent=Os01t0609900-01
Chr01	irgsp1_rep	three_prime_UTR	24110324	24110480	.	-	.	Parent=Os01t0609900-01
Chr01	irgsp1_rep	three_prime_UTR	24109970	24110223	.	-	.	Parent=Os01t0609900-01
Chr01	irgsp1_rep	three_prime_UTR	24109549	24109881	.	-	.	Parent=Os01t0609900-01
Chr01	irgsp1_rep	three_prime_UTR	24109162	24109452	.	-	.	Parent=Os01t0609900-01
Chr01	irgsp1_rep	three_prime_UTR	24108990	24109073	.	-	.	Parent=Os01t0609900-01
Chr01	irgsp1_rep	three_prime_UTR	24108753	24108886	.	-	.	Parent=Os01t0609900-01
Chr01	irgsp1_rep	three_prime_UTR	24108424	24108651	.	-	.	Parent=Os01t0609900-01
Chr01	irgsp1_rep	three_prime_UTR	24108169	24108340	.	-	.	Parent=Os01t0609900-01
Chr01	irgsp1_rep	three_prime_UTR	24107720	24107974	.	-	.	Parent=Os01t0609900-01
Chr01	irgsp1_rep	three_prime_UTR	24107088	24107624	.	-	.	Parent=Os01t0609900-01
Chr01	irgsp1_rep	mRNA	24107086	24114978	.	-	.	ID=Os01t0609900-02;Name=Os01t0609900-02;Locus_id=Os01g0609900;CGSNL Gene Symbol=PDR8;CGSNL Gene Name=PLEIOTROPIC DRUG RESISTANCE 8;Oryzabase Gene Symbol Synonym(s)=OsPDR8%2C PDR4%2C P0410E03.16%2C OsABCG37%2C OsPDR4;Oryzabase Gene Name Synonym(s)=sativa pleiotropic drug resistance 8%2C Pleiotropic drug resistance protein 4%2C ABC transporter superfamily ABCG subgroup member 37%2C pleiotropic drug resistance 4;Note=Similar to PDR-like ABC transporter (PDR4 ABC transporter).;Transcript_evidence=AK065988 (DDBJ%2C Best hit);ORF_evidence=Q8GU89 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC-2 type transporter (IPR013525),Plant PDR ABC transporter associated (IPR013581);NIAS_FLcDNA=J013043D14;Oryzabase=8340;Expression=AK065988;TENOR=Os01t0609900-02;KEGG=Os01t0609900-02
Chr01	irgsp1_rep	CDS	24114700	24114978	.	-	0	Parent=Os01t0609900-02
Chr01	irgsp1_rep	CDS	24113211	24113299	.	-	0	Parent=Os01t0609900-02
Chr01	irgsp1_rep	CDS	24112852	24113096	.	-	1	Parent=Os01t0609900-02
Chr01	irgsp1_rep	CDS	24112674	24112750	.	-	2	Parent=Os01t0609900-02
Chr01	irgsp1_rep	CDS	24112455	24112508	.	-	0	Parent=Os01t0609900-02
Chr01	irgsp1_rep	CDS	24112256	24112346	.	-	0	Parent=Os01t0609900-02
Chr01	irgsp1_rep	CDS	24111880	24112181	.	-	2	Parent=Os01t0609900-02
Chr01	irgsp1_rep	CDS	24111503	24111784	.	-	0	Parent=Os01t0609900-02
Chr01	irgsp1_rep	CDS	24111105	24111418	.	-	0	Parent=Os01t0609900-02
Chr01	irgsp1_rep	CDS	24110768	24110928	.	-	1	Parent=Os01t0609900-02
Chr01	irgsp1_rep	CDS	24110563	24110666	.	-	2	Parent=Os01t0609900-02
Chr01	irgsp1_rep	CDS	24110324	24110480	.	-	0	Parent=Os01t0609900-02
Chr01	irgsp1_rep	CDS	24109970	24110223	.	-	2	Parent=Os01t0609900-02
Chr01	irgsp1_rep	CDS	24109549	24109881	.	-	0	Parent=Os01t0609900-02
Chr01	irgsp1_rep	CDS	24109162	24109452	.	-	0	Parent=Os01t0609900-02
Chr01	irgsp1_rep	CDS	24108990	24109073	.	-	0	Parent=Os01t0609900-02
Chr01	irgsp1_rep	CDS	24108753	24108886	.	-	0	Parent=Os01t0609900-02
Chr01	irgsp1_rep	CDS	24108424	24108651	.	-	1	Parent=Os01t0609900-02
Chr01	irgsp1_rep	CDS	24108169	24108340	.	-	1	Parent=Os01t0609900-02
Chr01	irgsp1_rep	CDS	24107720	24107974	.	-	0	Parent=Os01t0609900-02
Chr01	irgsp1_rep	CDS	24107364	24107624	.	-	0	Parent=Os01t0609900-02
Chr01	irgsp1_rep	three_prime_UTR	24107086	24107363	.	-	.	Parent=Os01t0609900-02
Chr01	irgsp1_rep	mRNA	24124911	24125477	.	-	.	ID=Os01t0610050-00;Name=Os01t0610050-00;Locus_id=Os01g0610050;Note=Non-protein coding transcript.;Transcript_evidence=CT834972 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os01t0610050-00
Chr01	irgsp1_rep	exon	24124911	24125477	.	-	.	Parent=Os01t0610050-00
Chr01	irgsp1_rep	mRNA	24126625	24129621	.	+	.	ID=Os01t0610100-01;Name=Os01t0610100-01;Locus_id=Os01g0610100;Oryzabase Gene Name Synonym(s)=vacuolar H+-ATPase subunit C%2C Vacuolar ATP synthase 21-kD proteolipid subunit C;Note=Similar to Clone ZZZ51 mRNA sequence.;Transcript_evidence=AK059810 (DDBJ%2C Best hit),AK104951 (DDBJ%2C Best hit);ORF_evidence=NP_001149665.1 (RefSeq);GO=Biological Process: ATP hydrolysis coupled proton transport (GO:0015991),Cellular Component: proton-transporting two-sector ATPase complex%2C proton-transporting domain (GO:0033177),Cellular Component: proton-transporting V-type ATPase%2C V0 domain (GO:0033179),Molecular Function: hydrogen ion transmembrane transporter activity (GO:0015078);InterPro=ATPase%2C V0 complex%2C proteolipid subunit C (IPR000245),ATPase%2C F0/V0 complex%2C subunit C (IPR002379);NIAS_FLcDNA=006-205-A07,001-110-C12;Oryzabase=20520;TENOR=Os01t0610100-01
Chr01	irgsp1_rep	five_prime_UTR	24126625	24126846	.	+	.	Parent=Os01t0610100-01
Chr01	irgsp1_rep	CDS	24126847	24126959	.	+	0	Parent=Os01t0610100-01
Chr01	irgsp1_rep	CDS	24127073	24127150	.	+	1	Parent=Os01t0610100-01
Chr01	irgsp1_rep	CDS	24128929	24129099	.	+	1	Parent=Os01t0610100-01
Chr01	irgsp1_rep	CDS	24129177	24129345	.	+	1	Parent=Os01t0610100-01
Chr01	irgsp1_rep	three_prime_UTR	24129346	24129621	.	+	.	Parent=Os01t0610100-01
Chr01	irgsp1_rep	mRNA	24136871	24144292	.	+	.	ID=Os01t0610300-01;Name=Os01t0610300-01;Locus_id=Os01g0610300;CGSNL Gene Symbol=IBM2;CGSNL Gene Name=INCREASED BONSAI METHYLATION 2;Oryzabase Gene Symbol Synonym(s)=OsIBM2;Oryzabase Gene Name Synonym(s)=Increased Bonsai Methylation 2;Note=Bromo adjacent region domain containing protein.;Transcript_evidence=AK102292 (DDBJ%2C Best hit);ORF_evidence=B9EY07 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: DNA binding (GO:0003677);InterPro=Bromo adjacent homology (BAH) domain (IPR001025),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033089K24;Oryzabase=23620;Expression=AK102292;TENOR=Os01t0610300-01;KEGG=Os01t0610300-01
Chr01	irgsp1_rep	five_prime_UTR	24136871	24137009	.	+	.	Parent=Os01t0610300-01
Chr01	irgsp1_rep	five_prime_UTR	24138743	24138786	.	+	.	Parent=Os01t0610300-01
Chr01	irgsp1_rep	CDS	24138787	24139119	.	+	0	Parent=Os01t0610300-01
Chr01	irgsp1_rep	CDS	24139906	24140074	.	+	0	Parent=Os01t0610300-01
Chr01	irgsp1_rep	CDS	24140188	24140633	.	+	2	Parent=Os01t0610300-01
Chr01	irgsp1_rep	CDS	24141429	24141452	.	+	0	Parent=Os01t0610300-01
Chr01	irgsp1_rep	CDS	24141625	24141717	.	+	0	Parent=Os01t0610300-01
Chr01	irgsp1_rep	CDS	24142695	24142773	.	+	0	Parent=Os01t0610300-01
Chr01	irgsp1_rep	CDS	24142868	24142952	.	+	2	Parent=Os01t0610300-01
Chr01	irgsp1_rep	CDS	24143368	24143479	.	+	1	Parent=Os01t0610300-01
Chr01	irgsp1_rep	CDS	24143561	24143677	.	+	0	Parent=Os01t0610300-01
Chr01	irgsp1_rep	CDS	24143772	24143819	.	+	0	Parent=Os01t0610300-01
Chr01	irgsp1_rep	three_prime_UTR	24143820	24144292	.	+	.	Parent=Os01t0610300-01
Chr01	irgsp1_rep	mRNA	24145891	24148846	.	+	.	ID=Os01t0610400-01;Name=Os01t0610400-01;Locus_id=Os01g0610400;Note=Acyl-CoA N-acyltransferase domain containing protein.;Transcript_evidence=AK241100 (DDBJ%2C Best hit);ORF_evidence=NP_001148868.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: N-acetyltransferase activity (GO:0008080);InterPro=GCN5-related N-acetyltransferase (GNAT) domain (IPR000182),Acyl-CoA N-acyltransferase (IPR016181);NIAS_FLcDNA=J065077N17;TENOR=Os01t0610400-01;KEGG=Os01t0610400-01
Chr01	irgsp1_rep	five_prime_UTR	24145891	24146009	.	+	.	Parent=Os01t0610400-01
Chr01	irgsp1_rep	CDS	24146010	24146208	.	+	0	Parent=Os01t0610400-01
Chr01	irgsp1_rep	CDS	24146631	24146753	.	+	2	Parent=Os01t0610400-01
Chr01	irgsp1_rep	CDS	24148411	24148628	.	+	2	Parent=Os01t0610400-01
Chr01	irgsp1_rep	three_prime_UTR	24148629	24148846	.	+	.	Parent=Os01t0610400-01
Chr01	irgsp1_rep	mRNA	24151078	24154089	.	-	.	ID=Os01t0610500-01;Name=Os01t0610500-01;Locus_id=Os01g0610500;Note=Yip1 domain containing protein.;Transcript_evidence=AK073115 (DDBJ%2C Best hit);ORF_evidence=B6SUQ1 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Yip1 domain (IPR006977);NIAS_FLcDNA=J033023I06;Expression=AK073115;TENOR=Os01t0610500-01;KEGG=Os01t0610500-01
Chr01	irgsp1_rep	five_prime_UTR	24153980	24154089	.	-	.	Parent=Os01t0610500-01
Chr01	irgsp1_rep	CDS	24153920	24153979	.	-	0	Parent=Os01t0610500-01
Chr01	irgsp1_rep	CDS	24153711	24153831	.	-	0	Parent=Os01t0610500-01
Chr01	irgsp1_rep	CDS	24153395	24153617	.	-	2	Parent=Os01t0610500-01
Chr01	irgsp1_rep	CDS	24151908	24152175	.	-	1	Parent=Os01t0610500-01
Chr01	irgsp1_rep	CDS	24151301	24151507	.	-	0	Parent=Os01t0610500-01
Chr01	irgsp1_rep	three_prime_UTR	24151078	24151300	.	-	.	Parent=Os01t0610500-01
Chr01	irgsp1_rep	mRNA	24151040	24153571	.	-	.	ID=Os01t0610500-02;Name=Os01t0610500-02;Locus_id=Os01g0610500;Note=Similar to Yip1 domain family member 1.;Transcript_evidence=AK105469 (DDBJ%2C Best hit);ORF_evidence=B6U3X6 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Yip1 domain (IPR006977);NIAS_FLcDNA=001-126-A07;Expression=AK105469;TENOR=Os01t0610500-02;KEGG=Os01t0610500-02
Chr01	irgsp1_rep	five_prime_UTR	24153571	24153571	.	-	.	Parent=Os01t0610500-02
Chr01	irgsp1_rep	CDS	24153395	24153570	.	-	0	Parent=Os01t0610500-02
Chr01	irgsp1_rep	CDS	24151908	24152175	.	-	1	Parent=Os01t0610500-02
Chr01	irgsp1_rep	CDS	24151301	24151507	.	-	0	Parent=Os01t0610500-02
Chr01	irgsp1_rep	three_prime_UTR	24151040	24151300	.	-	.	Parent=Os01t0610500-02
Chr01	irgsp1_rep	mRNA	24155649	24162572	.	-	.	ID=Os01t0610600-01;Name=Os01t0610600-01;Locus_id=Os01g0610600;Note=Endonuclease/exonuclease/phosphatase domain containing protein.;Transcript_evidence=AK120276 (DDBJ%2C Best hit);ORF_evidence=B8ABL5 (UniProt);InterPro=Endonuclease/exonuclease/phosphatase (IPR005135);NIAS_FLcDNA=J013049B17;Expression=AK120276;TENOR=Os01t0610600-01;KEGG=Os01t0610600-01
Chr01	irgsp1_rep	five_prime_UTR	24162492	24162572	.	-	.	Parent=Os01t0610600-01
Chr01	irgsp1_rep	CDS	24162432	24162491	.	-	0	Parent=Os01t0610600-01
Chr01	irgsp1_rep	CDS	24161814	24162321	.	-	0	Parent=Os01t0610600-01
Chr01	irgsp1_rep	CDS	24160710	24160873	.	-	2	Parent=Os01t0610600-01
Chr01	irgsp1_rep	CDS	24160293	24160358	.	-	0	Parent=Os01t0610600-01
Chr01	irgsp1_rep	CDS	24159857	24159909	.	-	0	Parent=Os01t0610600-01
Chr01	irgsp1_rep	CDS	24159625	24159706	.	-	1	Parent=Os01t0610600-01
Chr01	irgsp1_rep	CDS	24159477	24159511	.	-	0	Parent=Os01t0610600-01
Chr01	irgsp1_rep	CDS	24159179	24159269	.	-	1	Parent=Os01t0610600-01
Chr01	irgsp1_rep	CDS	24158656	24158748	.	-	0	Parent=Os01t0610600-01
Chr01	irgsp1_rep	CDS	24158496	24158528	.	-	0	Parent=Os01t0610600-01
Chr01	irgsp1_rep	CDS	24158330	24158418	.	-	0	Parent=Os01t0610600-01
Chr01	irgsp1_rep	CDS	24157018	24158230	.	-	1	Parent=Os01t0610600-01
Chr01	irgsp1_rep	CDS	24156290	24156375	.	-	0	Parent=Os01t0610600-01
Chr01	irgsp1_rep	CDS	24156113	24156197	.	-	1	Parent=Os01t0610600-01
Chr01	irgsp1_rep	CDS	24155946	24155999	.	-	0	Parent=Os01t0610600-01
Chr01	irgsp1_rep	three_prime_UTR	24155649	24155945	.	-	.	Parent=Os01t0610600-01
Chr01	irgsp1_rep	mRNA	24160748	24162572	.	-	.	ID=Os01t0610600-02;Name=Os01t0610600-02;Locus_id=Os01g0610600;Note=Similar to endonuclease/exonuclease/phosphatase family protein.;Transcript_evidence=AK101852 (DDBJ%2C Best hit);ORF_evidence=NP_196696.2 (RefSeq);NIAS_FLcDNA=J033069K15;TENOR=Os01t0610600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	24162432	24162572	.	-	.	Parent=Os01t0610600-02
Chr01	irgsp1_rep	five_prime_UTR	24160893	24162321	.	-	.	Parent=Os01t0610600-02
Chr01	irgsp1_rep	CDS	24160748	24160892	.	-	0	Parent=Os01t0610600-02
Chr01	irgsp1_rep	mRNA	24163351	24166195	.	-	.	ID=Os01t0610700-01;Name=Os01t0610700-01;Locus_id=Os01g0610700;Oryzabase Gene Symbol Synonym(s)=OsRFPV-4;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPV-4%2C RING-V protein 4;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK068000 (DDBJ%2C Best hit);ORF_evidence=B6U7G3 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-CH-type (IPR011016),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J013127G21;Oryzabase=11803;Expression=AK068000;TENOR=Os01t0610700-01;KEGG=Os01t0610700-01
Chr01	irgsp1_rep	five_prime_UTR	24166124	24166195	.	-	.	Parent=Os01t0610700-01
Chr01	irgsp1_rep	CDS	24165928	24166123	.	-	0	Parent=Os01t0610700-01
Chr01	irgsp1_rep	CDS	24165641	24165726	.	-	2	Parent=Os01t0610700-01
Chr01	irgsp1_rep	CDS	24165063	24165209	.	-	0	Parent=Os01t0610700-01
Chr01	irgsp1_rep	CDS	24164745	24164868	.	-	0	Parent=Os01t0610700-01
Chr01	irgsp1_rep	CDS	24164016	24164299	.	-	2	Parent=Os01t0610700-01
Chr01	irgsp1_rep	CDS	24163811	24163903	.	-	0	Parent=Os01t0610700-01
Chr01	irgsp1_rep	three_prime_UTR	24163351	24163810	.	-	.	Parent=Os01t0610700-01
Chr01	irgsp1_rep	mRNA	24168245	24170219	.	-	.	ID=Os01t0610800-01;Name=Os01t0610800-01;Locus_id=Os01g0610800;Note=Thrombospondin%2C type 1 repeat domain containing protein.;Transcript_evidence=AK062532 (DDBJ%2C Best hit);ORF_evidence=A2ZVB1 (UniProt);InterPro=Thrombospondin%2C type 1 repeat (IPR000884);NIAS_FLcDNA=001-104-E07;TENOR=Os01t0610800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	24170180	24170219	.	-	0	Parent=Os01t0610800-01
Chr01	irgsp1_rep	CDS	24169676	24169830	.	-	2	Parent=Os01t0610800-01
Chr01	irgsp1_rep	CDS	24168809	24168975	.	-	0	Parent=Os01t0610800-01
Chr01	irgsp1_rep	CDS	24168379	24168433	.	-	1	Parent=Os01t0610800-01
Chr01	irgsp1_rep	three_prime_UTR	24168245	24168378	.	-	.	Parent=Os01t0610800-01
Chr01	irgsp1_rep	mRNA	24181111	24183979	.	+	.	ID=Os01t0611000-01;Name=Os01t0611000-01;Locus_id=Os01g0611000;Note=Protein of unknown function DUF642 domain containing protein.;Transcript_evidence=AK072500 (DDBJ%2C Best hit),AK060682 (DDBJ%2C Best hit);ORF_evidence=XP_002455939.1 (RefSeq);InterPro=Protein of unknown function DUF642 (IPR006946),Galactose-binding domain-like (IPR008979);NIAS_FLcDNA=J023127H12,001-029-E10;TENOR=Os01t0611000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	24181111	24181226	.	+	.	Parent=Os01t0611000-01
Chr01	irgsp1_rep	CDS	24181227	24181302	.	+	0	Parent=Os01t0611000-01
Chr01	irgsp1_rep	CDS	24182485	24183530	.	+	2	Parent=Os01t0611000-01
Chr01	irgsp1_rep	three_prime_UTR	24183531	24183979	.	+	.	Parent=Os01t0611000-01
Chr01	irgsp1_rep	mRNA	24181239	24183894	.	+	.	ID=Os01t0611000-02;Name=Os01t0611000-02;Locus_id=Os01g0611000;Note=Hypothetical conserved gene.;Transcript_evidence=AK105921 (DDBJ%2C Best hit);ORF_evidence=Q9AX68 (UniProt);InterPro=Protein of unknown function DUF642 (IPR006946),Galactose-binding domain-like (IPR008979);NIAS_FLcDNA=001-205-A04;Expression=AK105921;TENOR=Os01t0611000-02;KEGG=Os01t0611000-02
Chr01	irgsp1_rep	CDS	24181239	24181302	.	+	0	Parent=Os01t0611000-02
Chr01	irgsp1_rep	CDS	24182485	24183530	.	+	2	Parent=Os01t0611000-02
Chr01	irgsp1_rep	three_prime_UTR	24183531	24183894	.	+	.	Parent=Os01t0611000-02
Chr01	irgsp1_rep	mRNA	24187513	24189601	.	-	.	ID=Os01t0611050-00;Name=Os01t0611050-00;Locus_id=Os01g0611050;Note=Hypothetical gene.;Transcript_evidence=BT016258 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0611050-00
Chr01	irgsp1_rep	five_prime_UTR	24189504	24189601	.	-	.	Parent=Os01t0611050-00
Chr01	irgsp1_rep	five_prime_UTR	24189075	24189326	.	-	.	Parent=Os01t0611050-00
Chr01	irgsp1_rep	five_prime_UTR	24188940	24189000	.	-	.	Parent=Os01t0611050-00
Chr01	irgsp1_rep	CDS	24188933	24188939	.	-	0	Parent=Os01t0611050-00
Chr01	irgsp1_rep	CDS	24188241	24188354	.	-	2	Parent=Os01t0611050-00
Chr01	irgsp1_rep	CDS	24188099	24188156	.	-	2	Parent=Os01t0611050-00
Chr01	irgsp1_rep	CDS	24187513	24187589	.	-	1	Parent=Os01t0611050-00
Chr01	irgsp1_rep	mRNA	24187312	24189794	.	+	.	ID=Os01t0611100-01;Name=Os01t0611100-01;Locus_id=Os01g0611100;RAP-DB Gene Symbol Synonym(s)=OsRAN1;RAP-DB Gene Name Synonym(s)=Ras-related nuclear protein 1;Oryzabase Gene Symbol Synonym(s)=OsRAN1%2C RAN1;Note=Small GTPase%2C Ras related nuclear protein%2C Cold tolerance%2C Regulation of cellular mitosis and auxin signalling pathway;Transcript_evidence=AK072731;ORF_evidence=Q7F7I7;GO=Biological Process: nucleocytoplasmic transport (GO:0006913),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),Small GTPase (IPR001806),Ran GTPase (IPR002041),Small GTP-binding protein domain (IPR005225);NIAS_FLcDNA=J023140D03;Manual Curation=October 23%2C 2020;Literature_PMID=24790113;Oryzabase=18099;Expression=AK072731;TENOR=Os01t0611100-01;KEGG=Os01t0611100-01;Subcellular location=nucleus (GO:0005634) [mainly],cytoplasm (GO:0005737)
Chr01	irgsp1_rep	five_prime_UTR	24187312	24187400	.	+	.	Parent=Os01t0611100-01
Chr01	irgsp1_rep	CDS	24187401	24187403	.	+	0	Parent=Os01t0611100-01
Chr01	irgsp1_rep	CDS	24187514	24187583	.	+	0	Parent=Os01t0611100-01
Chr01	irgsp1_rep	CDS	24188092	24188148	.	+	2	Parent=Os01t0611100-01
Chr01	irgsp1_rep	CDS	24188237	24188354	.	+	2	Parent=Os01t0611100-01
Chr01	irgsp1_rep	CDS	24188933	24189022	.	+	1	Parent=Os01t0611100-01
Chr01	irgsp1_rep	CDS	24189098	24189277	.	+	1	Parent=Os01t0611100-01
Chr01	irgsp1_rep	CDS	24189363	24189440	.	+	1	Parent=Os01t0611100-01
Chr01	irgsp1_rep	CDS	24189531	24189600	.	+	1	Parent=Os01t0611100-01
Chr01	irgsp1_rep	three_prime_UTR	24189601	24189794	.	+	.	Parent=Os01t0611100-01
Chr01	irgsp1_rep	mRNA	24195504	24196616	.	+	.	ID=Os01t0611300-01;Name=Os01t0611300-01;Locus_id=Os01g0611300;Oryzabase Gene Name Synonym(s)=metal tolerance protein;Note=Similar to Metal tolerance protein 7.;Transcript_evidence=AK061273 (DDBJ%2C Best hit);ORF_evidence=Q9LDU0 (UniProt);NIAS_FLcDNA=006-212-E03;Oryzabase=23475;TENOR=Os01t0611300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	24195504	24196525	.	+	.	Parent=Os01t0611300-01
Chr01	irgsp1_rep	CDS	24196526	24196616	.	+	0	Parent=Os01t0611300-01
Chr01	irgsp1_rep	mRNA	24240257	24245230	.	-	.	ID=Os01t0611900-01;Name=Os01t0611900-01;Locus_id=Os01g0611900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK120659 (DDBJ%2C Best hit);ORF_evidence=B8ABZ0 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013158F03;Expression=AK120659;TENOR=Os01t0611900-01;KEGG=Os01t0611900-01
Chr01	irgsp1_rep	five_prime_UTR	24245132	24245230	.	-	.	Parent=Os01t0611900-01
Chr01	irgsp1_rep	CDS	24242729	24245131	.	-	0	Parent=Os01t0611900-01
Chr01	irgsp1_rep	three_prime_UTR	24242618	24242728	.	-	.	Parent=Os01t0611900-01
Chr01	irgsp1_rep	three_prime_UTR	24241367	24241697	.	-	.	Parent=Os01t0611900-01
Chr01	irgsp1_rep	three_prime_UTR	24240570	24240695	.	-	.	Parent=Os01t0611900-01
Chr01	irgsp1_rep	three_prime_UTR	24240257	24240436	.	-	.	Parent=Os01t0611900-01
Chr01	irgsp1_rep	mRNA	24242458	24245152	.	-	.	ID=Os01t0611900-02;Name=Os01t0611900-02;Locus_id=Os01g0611900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK110291 (DDBJ%2C Best hit);ORF_evidence=B8ABZ0 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-163-F12;Expression=AK110291;TENOR=Os01t0611900-02;KEGG=Os01t0611900-02
Chr01	irgsp1_rep	five_prime_UTR	24245132	24245152	.	-	.	Parent=Os01t0611900-02
Chr01	irgsp1_rep	CDS	24242729	24245131	.	-	0	Parent=Os01t0611900-02
Chr01	irgsp1_rep	three_prime_UTR	24242458	24242728	.	-	.	Parent=Os01t0611900-02
Chr01	irgsp1_rep	mRNA	24244539	24245291	.	+	.	ID=Os01t0611950-00;Name=Os01t0611950-00;Locus_id=Os01g0611950;Note=Hypothetical gene.;Transcript_evidence=CT834108 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os01t0611950-00;KEGG=Os01t0611950-00
Chr01	irgsp1_rep	five_prime_UTR	24244539	24244540	.	+	.	Parent=Os01t0611950-00
Chr01	irgsp1_rep	CDS	24244541	24244825	.	+	0	Parent=Os01t0611950-00
Chr01	irgsp1_rep	three_prime_UTR	24244826	24244972	.	+	.	Parent=Os01t0611950-00
Chr01	irgsp1_rep	three_prime_UTR	24245169	24245227	.	+	.	Parent=Os01t0611950-00
Chr01	irgsp1_rep	three_prime_UTR	24245238	24245291	.	+	.	Parent=Os01t0611950-00
Chr01	irgsp1_rep	mRNA	24245869	24249361	.	-	.	ID=Os01t0612000-01;Name=Os01t0612000-01;Locus_id=Os01g0612000;CGSNL Gene Symbol=DNMT2;CGSNL Gene Name=DNA METHYLTRANSFERASE 2;Oryzabase Gene Symbol Synonym(s)=OsDNMT2%2C OsDnmt2;Oryzabase Gene Name Synonym(s)=DNA methyltransferase 2;Note=Similar to DNA methyl transferase4.;Transcript_evidence=AK111502 (DDBJ%2C Best hit);ORF_evidence=NP_001105173.1 (RefSeq);GO=Biological Process: DNA methylation (GO:0006306),Molecular Function: DNA binding (GO:0003677);InterPro=C-5 cytosine methyltransferase (IPR001525);NIAS_FLcDNA=J013000P01;Oryzabase=10403;TENOR=Os01t0612000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	24249282	24249361	.	-	.	Parent=Os01t0612000-01
Chr01	irgsp1_rep	CDS	24249225	24249281	.	-	0	Parent=Os01t0612000-01
Chr01	irgsp1_rep	CDS	24249012	24249122	.	-	0	Parent=Os01t0612000-01
Chr01	irgsp1_rep	CDS	24248328	24248421	.	-	0	Parent=Os01t0612000-01
Chr01	irgsp1_rep	CDS	24248134	24248252	.	-	2	Parent=Os01t0612000-01
Chr01	irgsp1_rep	CDS	24247927	24248049	.	-	0	Parent=Os01t0612000-01
Chr01	irgsp1_rep	CDS	24247450	24247555	.	-	0	Parent=Os01t0612000-01
Chr01	irgsp1_rep	CDS	24247345	24247371	.	-	2	Parent=Os01t0612000-01
Chr01	irgsp1_rep	CDS	24247143	24247255	.	-	2	Parent=Os01t0612000-01
Chr01	irgsp1_rep	three_prime_UTR	24246962	24247142	.	-	.	Parent=Os01t0612000-01
Chr01	irgsp1_rep	three_prime_UTR	24246763	24246843	.	-	.	Parent=Os01t0612000-01
Chr01	irgsp1_rep	three_prime_UTR	24246610	24246674	.	-	.	Parent=Os01t0612000-01
Chr01	irgsp1_rep	three_prime_UTR	24245869	24246449	.	-	.	Parent=Os01t0612000-01
Chr01	irgsp1_rep	mRNA	24255379	24259940	.	+	.	ID=Os01t0612200-01;Name=Os01t0612200-01;Locus_id=Os01g0612200;Oryzabase Gene Symbol Synonym(s)=coxVb%2C COX5b;Oryzabase Gene Name Synonym(s)=cytoChrome c oxidase subunit Vb%2C cytoChrome c oxidase subunit 5b;Note=CytoChrome c oxidase%2C subunit Vb family protein.;Transcript_evidence=AK071340 (DDBJ%2C Best hit);ORF_evidence=B6SIM0 (UniProt);GO=Cellular Component: mitochondrial envelope (GO:0005740),Molecular Function: cytoChrome-c oxidase activity (GO:0004129);InterPro=CytoChrome c oxidase%2C subunit Vb (IPR002124);NIAS_FLcDNA=J023089B16;Oryzabase=13771;Expression=AK071340;TENOR=Os01t0612200-01;KEGG=Os01t0612200-01 (EC:1.9.3.1)
Chr01	irgsp1_rep	five_prime_UTR	24255379	24255456	.	+	.	Parent=Os01t0612200-01
Chr01	irgsp1_rep	CDS	24255457	24255622	.	+	0	Parent=Os01t0612200-01
Chr01	irgsp1_rep	CDS	24255721	24255800	.	+	2	Parent=Os01t0612200-01
Chr01	irgsp1_rep	CDS	24255925	24255975	.	+	0	Parent=Os01t0612200-01
Chr01	irgsp1_rep	CDS	24259133	24259199	.	+	0	Parent=Os01t0612200-01
Chr01	irgsp1_rep	CDS	24259294	24259373	.	+	2	Parent=Os01t0612200-01
Chr01	irgsp1_rep	CDS	24259520	24259585	.	+	0	Parent=Os01t0612200-01
Chr01	irgsp1_rep	three_prime_UTR	24259586	24259940	.	+	.	Parent=Os01t0612200-01
Chr01	irgsp1_rep	mRNA	24261982	24267594	.	-	.	ID=Os01t0612350-01;Name=Os01t0612350-01;Locus_id=Os01g0612350;Note=Hypothetical gene.;Transcript_evidence=AK288449 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090034O03;TENOR=Os01t0612350-01;KEGG=Os01t0612350-01
Chr01	irgsp1_rep	five_prime_UTR	24263969	24267594	.	-	.	Parent=Os01t0612350-01
Chr01	irgsp1_rep	CDS	24263675	24263968	.	-	0	Parent=Os01t0612350-01
Chr01	irgsp1_rep	three_prime_UTR	24261982	24263674	.	-	.	Parent=Os01t0612350-01
Chr01	irgsp1_rep	mRNA	24271398	24272349	.	+	.	ID=Os01t0612425-00;Name=Os01t0612425-00;Locus_id=Os01g0612425;Note=Hypothetical protein.;Transcript_evidence=tplb0003i09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0612425-00
Chr01	irgsp1_rep	five_prime_UTR	24271398	24271485	.	+	.	Parent=Os01t0612425-00
Chr01	irgsp1_rep	CDS	24271486	24271758	.	+	0	Parent=Os01t0612425-00
Chr01	irgsp1_rep	three_prime_UTR	24271759	24271909	.	+	.	Parent=Os01t0612425-00
Chr01	irgsp1_rep	three_prime_UTR	24271996	24272349	.	+	.	Parent=Os01t0612425-00
Chr01	irgsp1_rep	mRNA	24277095	24280999	.	+	.	ID=Os01t0612500-01;Name=Os01t0612500-01;Locus_id=Os01g0612500;Oryzabase Gene Symbol Synonym(s)=OsPOP2%2C POP2;Oryzabase Gene Name Synonym(s)=Prolyl Oligopeptidase 2%2C PROLYL OLIGOPEPTIDASE 2;Note=Phospholipase/carboxylesterase domain containing protein.;Transcript_evidence=AK069125 (DDBJ%2C Best hit);ORF_evidence=B6T1C9 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Phospholipase/carboxylesterase/thioesterase (IPR003140);NIAS_FLcDNA=J023004J23;Oryzabase=20012;Expression=AK069125;TENOR=Os01t0612500-01;KEGG=Os01t0612500-01 (EC:3.1.1.5)
Chr01	irgsp1_rep	five_prime_UTR	24277095	24277219	.	+	.	Parent=Os01t0612500-01
Chr01	irgsp1_rep	CDS	24277220	24277244	.	+	0	Parent=Os01t0612500-01
Chr01	irgsp1_rep	CDS	24277347	24277458	.	+	2	Parent=Os01t0612500-01
Chr01	irgsp1_rep	CDS	24279318	24279354	.	+	1	Parent=Os01t0612500-01
Chr01	irgsp1_rep	CDS	24279628	24279697	.	+	0	Parent=Os01t0612500-01
Chr01	irgsp1_rep	CDS	24279867	24279971	.	+	2	Parent=Os01t0612500-01
Chr01	irgsp1_rep	CDS	24280094	24280244	.	+	2	Parent=Os01t0612500-01
Chr01	irgsp1_rep	CDS	24280343	24280425	.	+	1	Parent=Os01t0612500-01
Chr01	irgsp1_rep	CDS	24280508	24280656	.	+	2	Parent=Os01t0612500-01
Chr01	irgsp1_rep	three_prime_UTR	24280657	24280999	.	+	.	Parent=Os01t0612500-01
Chr01	irgsp1_rep	mRNA	24282911	24285306	.	-	.	ID=Os01t0612600-01;Name=Os01t0612600-01;Locus_id=Os01g0612600;Oryzabase Gene Name Synonym(s)=DUF1644 family protein;Note=Protein of unknown function DUF1644 family protein.;Transcript_evidence=AK066561 (DDBJ%2C Best hit),AK062906 (DDBJ%2C Best hit);ORF_evidence=B8ABU8 (UniProt);InterPro=Protein of unknown function DUF1644 (IPR012866);NIAS_FLcDNA=J013073D14,001-108-F10;Oryzabase=19991;Expression=AK066561;TENOR=Os01t0612600-01;KEGG=Os01t0612600-01
Chr01	irgsp1_rep	five_prime_UTR	24284308	24285306	.	-	.	Parent=Os01t0612600-01
Chr01	irgsp1_rep	CDS	24283327	24284307	.	-	0	Parent=Os01t0612600-01
Chr01	irgsp1_rep	three_prime_UTR	24282911	24283326	.	-	.	Parent=Os01t0612600-01
Chr01	irgsp1_rep	mRNA	24294290	24299500	.	+	.	ID=Os01t0612700-01;Name=Os01t0612700-01;Locus_id=Os01g0612700;CGSNL Gene Symbol=LOL2;CGSNL Gene Name=LSD1-LIKE ZINC FINGER PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsLOL2%2C OsLSD5%2C OsLOL5%2C LOL5;Oryzabase Gene Name Synonym(s)=LSD1-like 2%2C lsd one like 2%2C LSD1-like-5;Note=Zinc finger%2C LSD1-type domain containing protein.;Transcript_evidence=AK065375 (DDBJ%2C Best hit);ORF_evidence=A2ZVC5 (UniProt);InterPro=Zinc finger%2C LSD1-type (IPR005735);NIAS_FLcDNA=J013008L21;Oryzabase=7293;TENOR=Os01t0612700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	24294290	24294291	.	+	.	Parent=Os01t0612700-01
Chr01	irgsp1_rep	CDS	24294292	24296635	.	+	0	Parent=Os01t0612700-01
Chr01	irgsp1_rep	CDS	24297626	24297733	.	+	2	Parent=Os01t0612700-01
Chr01	irgsp1_rep	CDS	24298222	24298331	.	+	2	Parent=Os01t0612700-01
Chr01	irgsp1_rep	CDS	24299097	24299171	.	+	0	Parent=Os01t0612700-01
Chr01	irgsp1_rep	three_prime_UTR	24299172	24299500	.	+	.	Parent=Os01t0612700-01
Chr01	irgsp1_rep	mRNA	24296432	24299415	.	+	.	ID=Os01t0612700-02;Name=Os01t0612700-02;Locus_id=Os01g0612700;RAP-DB Gene Symbol Synonym(s)=LOL2%2C OsLOL2%2C OsLOL5;RAP-DB Gene Name Synonym(s)=LSD1-LIKE ZINC FINGER PROTEIN%2C LSD1-like 2%2C LSD1-like-5;CGSNL Gene Symbol=LOL2;CGSNL Gene Name=LSD1-LIKE ZINC FINGER PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsLOL2%2C OsLSD5%2C OsLOL5%2C LOL5;Oryzabase Gene Name Synonym(s)=LSD1-like 2%2C lsd one like 2%2C LSD1-like-5;Note=LSD1-like-type zinc finger protein%2C Disease resistance%2C Saline-alkaline stress resistance;Transcript_evidence=AJ620677;ORF_evidence=Q704V3;InterPro=Zinc finger%2C LSD1-type (IPR005735);Manual Curation=June 20%2C 2017;Literature_PMID=26920613,17404758;Oryzabase=7293;Subcellular location=nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	24296432	24296436	.	+	.	Parent=Os01t0612700-02
Chr01	irgsp1_rep	CDS	24296437	24296635	.	+	0	Parent=Os01t0612700-02
Chr01	irgsp1_rep	CDS	24297626	24297733	.	+	2	Parent=Os01t0612700-02
Chr01	irgsp1_rep	CDS	24298222	24298331	.	+	2	Parent=Os01t0612700-02
Chr01	irgsp1_rep	CDS	24299097	24299171	.	+	0	Parent=Os01t0612700-02
Chr01	irgsp1_rep	three_prime_UTR	24299172	24299415	.	+	.	Parent=Os01t0612700-02
Chr01	irgsp1_rep	mRNA	24300004	24300543	.	-	.	ID=Os01t0612750-00;Name=Os01t0612750-00;Locus_id=Os01g0612750;Note=Hypothetical gene.;Transcript_evidence=CT828634 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os01t0612750-00;KEGG=Os01t0612750-00
Chr01	irgsp1_rep	five_prime_UTR	24300542	24300543	.	-	.	Parent=Os01t0612750-00
Chr01	irgsp1_rep	CDS	24300113	24300541	.	-	0	Parent=Os01t0612750-00
Chr01	irgsp1_rep	three_prime_UTR	24300004	24300112	.	-	.	Parent=Os01t0612750-00
Chr01	irgsp1_rep	mRNA	24300144	24301062	.	+	.	ID=Os01t0612800-01;Name=Os01t0612800-01;Locus_id=Os01g0612800;Note=Conserved hypothetical protein.;Transcript_evidence=AK071035 (DDBJ%2C Best hit);ORF_evidence=B8ABU9 (UniProt);NIAS_FLcDNA=J023078J12;Expression=AK071035;TENOR=Os01t0612800-01;KEGG=Os01t0612800-01
Chr01	irgsp1_rep	five_prime_UTR	24300144	24300199	.	+	.	Parent=Os01t0612800-01
Chr01	irgsp1_rep	CDS	24300200	24300355	.	+	0	Parent=Os01t0612800-01
Chr01	irgsp1_rep	CDS	24300463	24300611	.	+	0	Parent=Os01t0612800-01
Chr01	irgsp1_rep	CDS	24300729	24300771	.	+	1	Parent=Os01t0612800-01
Chr01	irgsp1_rep	three_prime_UTR	24300772	24300826	.	+	.	Parent=Os01t0612800-01
Chr01	irgsp1_rep	three_prime_UTR	24300918	24301062	.	+	.	Parent=Os01t0612800-01
Chr01	irgsp1_rep	mRNA	24312652	24317113	.	+	.	ID=Os01t0612900-01;Name=Os01t0612900-01;Locus_id=Os01g0612900;CGSNL Gene Symbol=GELP17;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 17;Oryzabase Gene Symbol Synonym(s)=OsGELP17;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 17;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK243338 (DDBJ%2C Best hit);ORF_evidence=NP_001149136.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087),Esterase%2C SGNH hydrolase-type%2C subgroup (IPR013831);NIAS_FLcDNA=J100059F11;Oryzabase=10967;TENOR=Os01t0612900-01;KEGG=Os01t0612900-01
Chr01	irgsp1_rep	five_prime_UTR	24312652	24312820	.	+	.	Parent=Os01t0612900-01
Chr01	irgsp1_rep	CDS	24312821	24313106	.	+	0	Parent=Os01t0612900-01
Chr01	irgsp1_rep	CDS	24313953	24314162	.	+	2	Parent=Os01t0612900-01
Chr01	irgsp1_rep	CDS	24315011	24315159	.	+	2	Parent=Os01t0612900-01
Chr01	irgsp1_rep	CDS	24315240	24315516	.	+	0	Parent=Os01t0612900-01
Chr01	irgsp1_rep	CDS	24316612	24316916	.	+	2	Parent=Os01t0612900-01
Chr01	irgsp1_rep	three_prime_UTR	24316917	24317113	.	+	.	Parent=Os01t0612900-01
Chr01	irgsp1_rep	mRNA	24334363	24336159	.	+	.	ID=Os01t0613100-00;Name=Os01t0613100-00;Locus_id=Os01g0613100;Note=Similar to predicted protein.;Transcript_evidence=BT066177 (DDBJ);ORF_evidence=Q5ZDY7 (UniProt);TENOR=Os01t0613100-00;KEGG=Os01t0613100-00
Chr01	irgsp1_rep	five_prime_UTR	24334363	24334379	.	+	.	Parent=Os01t0613100-00
Chr01	irgsp1_rep	CDS	24334380	24336158	.	+	0	Parent=Os01t0613100-00
Chr01	irgsp1_rep	three_prime_UTR	24336159	24336159	.	+	.	Parent=Os01t0613100-00
Chr01	irgsp1_rep	mRNA	24341214	24343585	.	+	.	ID=Os01t0613300-01;Name=Os01t0613300-01;Locus_id=Os01g0613300;Note=Conserved hypothetical protein CHP02058 domain containing protein.;Transcript_evidence=AK062537 (DDBJ%2C Best hit);ORF_evidence=Q5ZDY5 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: protein polymerization (GO:0051258),Cellular Component: protein complex (GO:0043234),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Conserved hypothetical protein CHP02058 (IPR011719),Tubulin/FtsZ%2C 2-layer sandwich domain (IPR018316);NIAS_FLcDNA=001-104-F05;Expression=AK062537;TENOR=Os01t0613300-01;KEGG=Os01t0613300-01
Chr01	irgsp1_rep	CDS	24341214	24341598	.	+	0	Parent=Os01t0613300-01
Chr01	irgsp1_rep	CDS	24341731	24341842	.	+	2	Parent=Os01t0613300-01
Chr01	irgsp1_rep	CDS	24343329	24343458	.	+	1	Parent=Os01t0613300-01
Chr01	irgsp1_rep	three_prime_UTR	24343459	24343585	.	+	.	Parent=Os01t0613300-01
Chr01	irgsp1_rep	mRNA	24341881	24342143	.	+	.	ID=Os01t0613400-01;Name=Os01t0613400-01;Locus_id=Os01g0613400;Note=Non-protein coding transcript.;Transcript_evidence=AK058952 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-020-A10;TENOR=Os01t0613400-01
Chr01	irgsp1_rep	exon	24341881	24342143	.	+	.	Parent=Os01t0613400-01
Chr01	irgsp1_rep	mRNA	24343518	24345172	.	-	.	ID=Os01t0613500-01;Name=Os01t0613500-01;Locus_id=Os01g0613500;Note=Peptidase C1A%2C papain family protein.;Transcript_evidence=AK070448 (DDBJ%2C Best hit);ORF_evidence=A2WSK3 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase%2C cysteine peptidase active site (IPR000169),Peptidase C1A%2C papain C-terminal (IPR000668),Peptidase C1A%2C papain (IPR013128),Proteinase inhibitor I29%2C cathepsin propeptide (IPR013201);NIAS_FLcDNA=J023048F12;Expression=AK070448;TENOR=Os01t0613500-01;KEGG=Os01t0613500-01
Chr01	irgsp1_rep	five_prime_UTR	24345142	24345172	.	-	.	Parent=Os01t0613500-01
Chr01	irgsp1_rep	CDS	24344667	24345141	.	-	0	Parent=Os01t0613500-01
Chr01	irgsp1_rep	CDS	24343806	24344413	.	-	2	Parent=Os01t0613500-01
Chr01	irgsp1_rep	three_prime_UTR	24343518	24343805	.	-	.	Parent=Os01t0613500-01
Chr01	irgsp1_rep	mRNA	24351308	24353345	.	-	.	ID=Os01t0613800-01;Name=Os01t0613800-01;Locus_id=Os01g0613800;Note=Peptidase C1A%2C papain family protein.;Transcript_evidence=AK110832 (DDBJ%2C Best hit);ORF_evidence=A2WSK4 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase%2C cysteine peptidase active site (IPR000169),Peptidase C1A%2C papain C-terminal (IPR000668),Peptidase C1A%2C papain (IPR013128),Proteinase inhibitor I29%2C cathepsin propeptide (IPR013201);NIAS_FLcDNA=002-172-A05;Oryzabase=14986;Expression=AK110832;TENOR=Os01t0613800-01;KEGG=Os01t0613800-01
Chr01	irgsp1_rep	five_prime_UTR	24353266	24353345	.	-	.	Parent=Os01t0613800-01
Chr01	irgsp1_rep	CDS	24352791	24353265	.	-	0	Parent=Os01t0613800-01
Chr01	irgsp1_rep	CDS	24351531	24352135	.	-	2	Parent=Os01t0613800-01
Chr01	irgsp1_rep	three_prime_UTR	24351308	24351530	.	-	.	Parent=Os01t0613800-01
Chr01	irgsp1_rep	mRNA	24354170	24360484	.	-	.	ID=Os01t0613900-01;Name=Os01t0613900-01;Locus_id=Os01g0613900;Note=Hypothetical conserved gene.;Transcript_evidence=AK072468 (DDBJ%2C Best hit);ORF_evidence=B9EY19 (UniProt);InterPro=LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 (IPR002882);NIAS_FLcDNA=J023119M14;Expression=AK072468;TENOR=Os01t0613900-01;KEGG=Os01t0613900-01
Chr01	irgsp1_rep	five_prime_UTR	24360430	24360484	.	-	.	Parent=Os01t0613900-01
Chr01	irgsp1_rep	CDS	24360219	24360429	.	-	0	Parent=Os01t0613900-01
Chr01	irgsp1_rep	CDS	24359141	24359257	.	-	2	Parent=Os01t0613900-01
Chr01	irgsp1_rep	CDS	24358920	24359052	.	-	2	Parent=Os01t0613900-01
Chr01	irgsp1_rep	CDS	24358695	24358791	.	-	1	Parent=Os01t0613900-01
Chr01	irgsp1_rep	CDS	24358405	24358452	.	-	0	Parent=Os01t0613900-01
Chr01	irgsp1_rep	three_prime_UTR	24358395	24358404	.	-	.	Parent=Os01t0613900-01
Chr01	irgsp1_rep	three_prime_UTR	24358025	24358181	.	-	.	Parent=Os01t0613900-01
Chr01	irgsp1_rep	three_prime_UTR	24357643	24357714	.	-	.	Parent=Os01t0613900-01
Chr01	irgsp1_rep	three_prime_UTR	24357123	24357206	.	-	.	Parent=Os01t0613900-01
Chr01	irgsp1_rep	three_prime_UTR	24355375	24356542	.	-	.	Parent=Os01t0613900-01
Chr01	irgsp1_rep	three_prime_UTR	24354170	24354496	.	-	.	Parent=Os01t0613900-01
Chr01	irgsp1_rep	mRNA	24355128	24360474	.	-	.	ID=Os01t0613900-02;Name=Os01t0613900-02;Locus_id=Os01g0613900;Note=Similar to predicted protein.;Transcript_evidence=AK067466 (DDBJ%2C Best hit);ORF_evidence=NP_973595.1 (RefSeq);InterPro=LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 (IPR002882);NIAS_FLcDNA=J013101I12;Expression=AK067466;TENOR=Os01t0613900-02;KEGG=Os01t0613900-02
Chr01	irgsp1_rep	five_prime_UTR	24360429	24360474	.	-	.	Parent=Os01t0613900-02
Chr01	irgsp1_rep	CDS	24360354	24360428	.	-	0	Parent=Os01t0613900-02
Chr01	irgsp1_rep	CDS	24360219	24360279	.	-	0	Parent=Os01t0613900-02
Chr01	irgsp1_rep	CDS	24359141	24359257	.	-	2	Parent=Os01t0613900-02
Chr01	irgsp1_rep	CDS	24358920	24359052	.	-	2	Parent=Os01t0613900-02
Chr01	irgsp1_rep	CDS	24358695	24358791	.	-	1	Parent=Os01t0613900-02
Chr01	irgsp1_rep	CDS	24358409	24358452	.	-	0	Parent=Os01t0613900-02
Chr01	irgsp1_rep	CDS	24358025	24358181	.	-	1	Parent=Os01t0613900-02
Chr01	irgsp1_rep	CDS	24357643	24357714	.	-	0	Parent=Os01t0613900-02
Chr01	irgsp1_rep	CDS	24357123	24357206	.	-	0	Parent=Os01t0613900-02
Chr01	irgsp1_rep	CDS	24356441	24356542	.	-	0	Parent=Os01t0613900-02
Chr01	irgsp1_rep	CDS	24356174	24356221	.	-	0	Parent=Os01t0613900-02
Chr01	irgsp1_rep	CDS	24355690	24355815	.	-	0	Parent=Os01t0613900-02
Chr01	irgsp1_rep	CDS	24355354	24355467	.	-	0	Parent=Os01t0613900-02
Chr01	irgsp1_rep	three_prime_UTR	24355128	24355353	.	-	.	Parent=Os01t0613900-02
Chr01	irgsp1_rep	mRNA	24354168	24360437	.	-	.	ID=Os01t0613900-03;Name=Os01t0613900-03;Locus_id=Os01g0613900;Note=LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 domain containing protein.;Transcript_evidence=AK119181 (DDBJ%2C Best hit);ORF_evidence=NP_180956.2 (RefSeq);InterPro=LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 (IPR002882);NIAS_FLcDNA=001-037-G12;Expression=AK119181;TENOR=Os01t0613900-03;KEGG=Os01t0613900-03
Chr01	irgsp1_rep	five_prime_UTR	24360430	24360437	.	-	.	Parent=Os01t0613900-03
Chr01	irgsp1_rep	CDS	24360219	24360429	.	-	0	Parent=Os01t0613900-03
Chr01	irgsp1_rep	CDS	24359141	24359257	.	-	2	Parent=Os01t0613900-03
Chr01	irgsp1_rep	CDS	24358920	24359052	.	-	2	Parent=Os01t0613900-03
Chr01	irgsp1_rep	CDS	24358695	24358791	.	-	1	Parent=Os01t0613900-03
Chr01	irgsp1_rep	CDS	24358409	24358452	.	-	0	Parent=Os01t0613900-03
Chr01	irgsp1_rep	CDS	24358025	24358181	.	-	1	Parent=Os01t0613900-03
Chr01	irgsp1_rep	CDS	24357643	24357714	.	-	0	Parent=Os01t0613900-03
Chr01	irgsp1_rep	CDS	24357123	24357206	.	-	0	Parent=Os01t0613900-03
Chr01	irgsp1_rep	CDS	24356441	24356542	.	-	0	Parent=Os01t0613900-03
Chr01	irgsp1_rep	CDS	24356174	24356221	.	-	0	Parent=Os01t0613900-03
Chr01	irgsp1_rep	CDS	24355690	24355815	.	-	0	Parent=Os01t0613900-03
Chr01	irgsp1_rep	CDS	24355375	24355467	.	-	0	Parent=Os01t0613900-03
Chr01	irgsp1_rep	CDS	24354353	24354496	.	-	0	Parent=Os01t0613900-03
Chr01	irgsp1_rep	three_prime_UTR	24354168	24354352	.	-	.	Parent=Os01t0613900-03
Chr01	irgsp1_rep	mRNA	24364146	24367678	.	+	.	ID=Os01t0614300-01;Name=Os01t0614300-01;Locus_id=Os01g0614300;Oryzabase Gene Symbol Synonym(s)=OsTBL16%2C TBL16;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 16;Note=Protein of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=AK105551 (DDBJ%2C Best hit);ORF_evidence=A2WSL0 (UniProt);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=001-128-A11;Oryzabase=21471;Expression=AK105551;TENOR=Os01t0614300-01;KEGG=Os01t0614300-01
Chr01	irgsp1_rep	five_prime_UTR	24364146	24364174	.	+	.	Parent=Os01t0614300-01
Chr01	irgsp1_rep	CDS	24364175	24364939	.	+	0	Parent=Os01t0614300-01
Chr01	irgsp1_rep	CDS	24366802	24366983	.	+	0	Parent=Os01t0614300-01
Chr01	irgsp1_rep	CDS	24367066	24367221	.	+	1	Parent=Os01t0614300-01
Chr01	irgsp1_rep	CDS	24367302	24367638	.	+	1	Parent=Os01t0614300-01
Chr01	irgsp1_rep	three_prime_UTR	24367639	24367678	.	+	.	Parent=Os01t0614300-01
Chr01	irgsp1_rep	mRNA	24366702	24367660	.	-	.	ID=Os01t0614400-01;Name=Os01t0614400-01;Locus_id=Os01g0614400;Note=Conserved hypothetical protein.;Transcript_evidence=AK060357 (DDBJ%2C Best hit);ORF_evidence=NP_001043566.1 (RefSeq);NIAS_FLcDNA=001-008-G12;TENOR=Os01t0614400-01;KEGG=Os01t0614400-01
Chr01	irgsp1_rep	five_prime_UTR	24367471	24367660	.	-	.	Parent=Os01t0614400-01
Chr01	irgsp1_rep	CDS	24367057	24367470	.	-	0	Parent=Os01t0614400-01
Chr01	irgsp1_rep	three_prime_UTR	24366702	24367056	.	-	.	Parent=Os01t0614400-01
Chr01	irgsp1_rep	mRNA	24369103	24372156	.	-	.	ID=Os01t0614500-01;Name=Os01t0614500-01;Locus_id=Os01g0614500;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK120636 (DDBJ%2C Best hit);ORF_evidence=NP_001150933.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013153K01;Expression=AK120636;TENOR=Os01t0614500-01;KEGG=Os01t0614500-01
Chr01	irgsp1_rep	five_prime_UTR	24372090	24372156	.	-	.	Parent=Os01t0614500-01
Chr01	irgsp1_rep	CDS	24370746	24372089	.	-	0	Parent=Os01t0614500-01
Chr01	irgsp1_rep	three_prime_UTR	24370745	24370745	.	-	.	Parent=Os01t0614500-01
Chr01	irgsp1_rep	three_prime_UTR	24369103	24369443	.	-	.	Parent=Os01t0614500-01
Chr01	irgsp1_rep	mRNA	24375877	24379899	.	+	.	ID=Os01t0614700-01;Name=Os01t0614700-01;Locus_id=Os01g0614700;CGSNL Gene Symbol=ABCI13;CGSNL Gene Name=ABC TRANSPORTER I FAMILY MEMBER 13;Oryzabase Gene Symbol Synonym(s)=OsABCI13;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCI subgroup member 13;Note=Similar to Adaptin ear-binding coat-associated protein 1.;Transcript_evidence=AK106098 (DDBJ%2C Best hit);ORF_evidence=B4FRD1 (UniProt);GO=Biological Process: endocytosis (GO:0006897),Cellular Component: membrane (GO:0016020);InterPro=Adaptin ear-binding coat-associated protein 1 NECAP-1 (IPR012466);NIAS_FLcDNA=001-207-C03;Oryzabase=12036;Expression=AK106098;TENOR=Os01t0614700-01;KEGG=Os01t0614700-01
Chr01	irgsp1_rep	five_prime_UTR	24375877	24376121	.	+	.	Parent=Os01t0614700-01
Chr01	irgsp1_rep	CDS	24376122	24376217	.	+	0	Parent=Os01t0614700-01
Chr01	irgsp1_rep	CDS	24376412	24376443	.	+	0	Parent=Os01t0614700-01
Chr01	irgsp1_rep	CDS	24376760	24376860	.	+	1	Parent=Os01t0614700-01
Chr01	irgsp1_rep	CDS	24376939	24377011	.	+	2	Parent=Os01t0614700-01
Chr01	irgsp1_rep	CDS	24377156	24377187	.	+	1	Parent=Os01t0614700-01
Chr01	irgsp1_rep	CDS	24377371	24377461	.	+	2	Parent=Os01t0614700-01
Chr01	irgsp1_rep	CDS	24377905	24378016	.	+	1	Parent=Os01t0614700-01
Chr01	irgsp1_rep	CDS	24379349	24379744	.	+	0	Parent=Os01t0614700-01
Chr01	irgsp1_rep	three_prime_UTR	24379745	24379899	.	+	.	Parent=Os01t0614700-01
Chr01	irgsp1_rep	mRNA	24375933	24379897	.	+	.	ID=Os01t0614700-02;Name=Os01t0614700-02;Locus_id=Os01g0614700;CGSNL Gene Symbol=ABCI13;CGSNL Gene Name=ABC TRANSPORTER I FAMILY MEMBER 13;Oryzabase Gene Symbol Synonym(s)=OsABCI13;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCI subgroup member 13;Note=Adaptin ear-binding coat-associated protein 1 NECAP-1 family protein.;Transcript_evidence=AK103190 (DDBJ%2C Best hit);ORF_evidence=B4FRD1 (UniProt);GO=Biological Process: endocytosis (GO:0006897),Cellular Component: membrane (GO:0016020);InterPro=Adaptin ear-binding coat-associated protein 1 NECAP-1 (IPR012466);NIAS_FLcDNA=J033121N24;Oryzabase=12036;Expression=AK103190;TENOR=Os01t0614700-02;KEGG=Os01t0614700-02
Chr01	irgsp1_rep	five_prime_UTR	24375933	24376121	.	+	.	Parent=Os01t0614700-02
Chr01	irgsp1_rep	CDS	24376122	24376217	.	+	0	Parent=Os01t0614700-02
Chr01	irgsp1_rep	CDS	24376412	24376443	.	+	0	Parent=Os01t0614700-02
Chr01	irgsp1_rep	CDS	24376760	24376860	.	+	1	Parent=Os01t0614700-02
Chr01	irgsp1_rep	CDS	24376939	24377011	.	+	2	Parent=Os01t0614700-02
Chr01	irgsp1_rep	CDS	24377156	24377187	.	+	1	Parent=Os01t0614700-02
Chr01	irgsp1_rep	CDS	24377371	24377461	.	+	2	Parent=Os01t0614700-02
Chr01	irgsp1_rep	CDS	24377905	24378016	.	+	1	Parent=Os01t0614700-02
Chr01	irgsp1_rep	CDS	24378452	24378469	.	+	0	Parent=Os01t0614700-02
Chr01	irgsp1_rep	three_prime_UTR	24378470	24378614	.	+	.	Parent=Os01t0614700-02
Chr01	irgsp1_rep	three_prime_UTR	24379349	24379897	.	+	.	Parent=Os01t0614700-02
Chr01	irgsp1_rep	mRNA	24375913	24379864	.	-	.	ID=Os01t0614750-00;Name=Os01t0614750-00;Locus_id=Os01g0614750;Note=Hypothetical protein.;Transcript_evidence=tplb0049c21 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0614750-00
Chr01	irgsp1_rep	five_prime_UTR	24379763	24379864	.	-	.	Parent=Os01t0614750-00
Chr01	irgsp1_rep	CDS	24379472	24379762	.	-	0	Parent=Os01t0614750-00
Chr01	irgsp1_rep	three_prime_UTR	24379349	24379471	.	-	.	Parent=Os01t0614750-00
Chr01	irgsp1_rep	three_prime_UTR	24377915	24378016	.	-	.	Parent=Os01t0614750-00
Chr01	irgsp1_rep	three_prime_UTR	24377358	24377466	.	-	.	Parent=Os01t0614750-00
Chr01	irgsp1_rep	three_prime_UTR	24376941	24377026	.	-	.	Parent=Os01t0614750-00
Chr01	irgsp1_rep	three_prime_UTR	24376356	24376862	.	-	.	Parent=Os01t0614750-00
Chr01	irgsp1_rep	three_prime_UTR	24375913	24376303	.	-	.	Parent=Os01t0614750-00
Chr01	irgsp1_rep	mRNA	24380637	24386666	.	-	.	ID=Os01t0614900-01;Name=Os01t0614900-01;Locus_id=Os01g0614900;RAP-DB Gene Symbol Synonym(s)=OsATG7;RAP-DB Gene Name Synonym(s)=autophagy-related 7;CGSNL Gene Symbol=ATG7;CGSNL Gene Name=AUTOPHAGY ASSOCIATED GENE 7;Oryzabase Gene Symbol Synonym(s)=OsATG7%2C Atg7;Oryzabase Gene Name Synonym(s)=autophagy 7%2C OsAuTophaGy7%2C autophagy-related 7%2C AUTOPHAGY RELATED7;Note=Rice homolog of ATG7%2C Autophagy-related protein%2C Autophagy-dependent lipid metabolism in anther development%2C Autophagy-mediated regulation of starch metabolism during seed maturation;Transcript_evidence=AK067422;ORF_evidence=Q5ZDX5;GO=Biological Process: autophagy (GO:0006914),Molecular Function: ubiquitin-like modifier activating enzyme activity (GO:0008641),Cellular Component: cytoplasm (GO:0005737);InterPro=Ubiquitin-like modifier-activating enzyme Atg7%2C N-terminal%2C subdomain 1 (IPR042522),Ubiquitin-like modifier-activating enzyme Atg7%2C N-terminal%2C subdomain 2 (IPR042523),Ubiquitin-activating enzyme (IPR035985),Ubiquitin-like modifier-activating enzyme Atg7 (IPR006285),Ubiquitin-like modifier-activating enzyme Atg7%2C N-terminal (IPR032197),THIF-type NAD/FAD binding fold (IPR000594);NIAS_FLcDNA=J013106N11;Manual Curation=October 14%2C 2020;Literature_PMID=31811157,24674921;Oryzabase=9643;Expression=AK067422;TENOR=Os01t0614900-01;KEGG=Os01t0614900-01
Chr01	irgsp1_rep	five_prime_UTR	24386574	24386666	.	-	.	Parent=Os01t0614900-01
Chr01	irgsp1_rep	CDS	24386423	24386573	.	-	0	Parent=Os01t0614900-01
Chr01	irgsp1_rep	CDS	24385546	24385742	.	-	2	Parent=Os01t0614900-01
Chr01	irgsp1_rep	CDS	24385265	24385456	.	-	0	Parent=Os01t0614900-01
Chr01	irgsp1_rep	CDS	24385112	24385166	.	-	0	Parent=Os01t0614900-01
Chr01	irgsp1_rep	CDS	24384933	24385027	.	-	2	Parent=Os01t0614900-01
Chr01	irgsp1_rep	CDS	24384602	24384788	.	-	0	Parent=Os01t0614900-01
Chr01	irgsp1_rep	CDS	24384373	24384493	.	-	2	Parent=Os01t0614900-01
Chr01	irgsp1_rep	CDS	24384152	24384293	.	-	1	Parent=Os01t0614900-01
Chr01	irgsp1_rep	CDS	24383890	24384039	.	-	0	Parent=Os01t0614900-01
Chr01	irgsp1_rep	CDS	24383624	24383812	.	-	0	Parent=Os01t0614900-01
Chr01	irgsp1_rep	CDS	24383223	24383408	.	-	0	Parent=Os01t0614900-01
Chr01	irgsp1_rep	CDS	24383015	24383130	.	-	0	Parent=Os01t0614900-01
Chr01	irgsp1_rep	CDS	24382725	24382872	.	-	1	Parent=Os01t0614900-01
Chr01	irgsp1_rep	CDS	24382403	24382648	.	-	0	Parent=Os01t0614900-01
Chr01	irgsp1_rep	CDS	24382162	24382311	.	-	0	Parent=Os01t0614900-01
Chr01	irgsp1_rep	CDS	24381887	24382075	.	-	0	Parent=Os01t0614900-01
Chr01	irgsp1_rep	CDS	24381632	24381814	.	-	0	Parent=Os01t0614900-01
Chr01	irgsp1_rep	CDS	24381419	24381534	.	-	0	Parent=Os01t0614900-01
Chr01	irgsp1_rep	CDS	24381148	24381295	.	-	1	Parent=Os01t0614900-01
Chr01	irgsp1_rep	CDS	24380876	24381043	.	-	0	Parent=Os01t0614900-01
Chr01	irgsp1_rep	three_prime_UTR	24380637	24380875	.	-	.	Parent=Os01t0614900-01
Chr01	irgsp1_rep	mRNA	24380643	24385185	.	-	.	ID=Os01t0614900-02;Name=Os01t0614900-02;Locus_id=Os01g0614900;CGSNL Gene Symbol=ATG7;CGSNL Gene Name=AUTOPHAGY ASSOCIATED GENE 7;Oryzabase Gene Symbol Synonym(s)=OsATG7%2C Atg7;Oryzabase Gene Name Synonym(s)=autophagy 7%2C OsAuTophaGy7%2C autophagy-related 7%2C AUTOPHAGY RELATED7;Note=Similar to autophagy-related 7.;Transcript_evidence=AK121767 (DDBJ%2C Best hit);ORF_evidence=NP_001137354.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824);InterPro=UBA/THIF-type NAD/FAD binding fold (IPR000594),Molybdenum cofactor biosynthesis%2C MoeB (IPR009036),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033092B02;Oryzabase=9643;Expression=AK121767;TENOR=Os01t0614900-02;KEGG=Os01t0614900-02
Chr01	irgsp1_rep	five_prime_UTR	24385185	24385185	.	-	.	Parent=Os01t0614900-02
Chr01	irgsp1_rep	CDS	24385112	24385184	.	-	0	Parent=Os01t0614900-02
Chr01	irgsp1_rep	CDS	24384933	24385027	.	-	2	Parent=Os01t0614900-02
Chr01	irgsp1_rep	CDS	24384602	24384788	.	-	0	Parent=Os01t0614900-02
Chr01	irgsp1_rep	CDS	24384373	24384490	.	-	2	Parent=Os01t0614900-02
Chr01	irgsp1_rep	CDS	24384152	24384293	.	-	1	Parent=Os01t0614900-02
Chr01	irgsp1_rep	CDS	24383890	24384039	.	-	0	Parent=Os01t0614900-02
Chr01	irgsp1_rep	CDS	24383624	24383812	.	-	0	Parent=Os01t0614900-02
Chr01	irgsp1_rep	CDS	24383223	24383408	.	-	0	Parent=Os01t0614900-02
Chr01	irgsp1_rep	CDS	24383015	24383130	.	-	0	Parent=Os01t0614900-02
Chr01	irgsp1_rep	CDS	24382725	24382872	.	-	1	Parent=Os01t0614900-02
Chr01	irgsp1_rep	CDS	24382403	24382648	.	-	0	Parent=Os01t0614900-02
Chr01	irgsp1_rep	CDS	24382162	24382311	.	-	0	Parent=Os01t0614900-02
Chr01	irgsp1_rep	CDS	24381887	24382075	.	-	0	Parent=Os01t0614900-02
Chr01	irgsp1_rep	CDS	24381632	24381814	.	-	0	Parent=Os01t0614900-02
Chr01	irgsp1_rep	CDS	24381419	24381534	.	-	0	Parent=Os01t0614900-02
Chr01	irgsp1_rep	CDS	24381148	24381295	.	-	1	Parent=Os01t0614900-02
Chr01	irgsp1_rep	CDS	24380876	24381043	.	-	0	Parent=Os01t0614900-02
Chr01	irgsp1_rep	three_prime_UTR	24380643	24380875	.	-	.	Parent=Os01t0614900-02
Chr01	irgsp1_rep	mRNA	24387024	24387834	.	+	.	ID=Os01t0615000-01;Name=Os01t0615000-01;Locus_id=Os01g0615000;Note=Hypothetical protein.;Transcript_evidence=AK107945 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-135-B05;TENOR=Os01t0615000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	24387024	24387350	.	+	0	Parent=Os01t0615000-01
Chr01	irgsp1_rep	three_prime_UTR	24387351	24387834	.	+	.	Parent=Os01t0615000-01
Chr01	irgsp1_rep	mRNA	24390676	24391763	.	-	.	ID=Os01t0615050-00;Name=Os01t0615050-00;Locus_id=Os01g0615050;Note=Proteinase inhibitor I13%2C potato inhibitor I family protein.;Transcript_evidence=CT834839 (DDBJ%2C Best hit);ORF_evidence=Q5EII1 (UniProt);GO=Biological Process: response to wounding (GO:0009611),Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Proteinase inhibitor I13%2C potato inhibitor I (IPR000864);TENOR=Os01t0615050-00;KEGG=Os01t0615050-00
Chr01	irgsp1_rep	five_prime_UTR	24391660	24391763	.	-	.	Parent=Os01t0615050-00
Chr01	irgsp1_rep	five_prime_UTR	24391175	24391224	.	-	.	Parent=Os01t0615050-00
Chr01	irgsp1_rep	CDS	24390986	24391174	.	-	0	Parent=Os01t0615050-00
Chr01	irgsp1_rep	three_prime_UTR	24390887	24390985	.	-	.	Parent=Os01t0615050-00
Chr01	irgsp1_rep	three_prime_UTR	24390676	24390874	.	-	.	Parent=Os01t0615050-00
Chr01	irgsp1_rep	mRNA	24392841	24393423	.	+	.	ID=Os01t0615100-01;Name=Os01t0615100-01;Locus_id=Os01g0615100;RAP-DB Gene Symbol Synonym(s)=OCPI2;RAP-DB Gene Name Synonym(s)=O. sativa chymotrypsin protease inhibitor 2%2C subtilisin-chymotrypsin protease inhibitor 2;CGSNL Gene Symbol=OCPI2;CGSNL Gene Name=O. SATIVA CHYMOTRYPSIN PROTEASE INHIBITOR 2;Oryzabase Gene Symbol Synonym(s)=OsSRO1a%2C SRO1a;Oryzabase Gene Name Synonym(s)=O. sativa chymotrypsin protease inhibitor 2%2C chymotrypsin protease inhibitor 2%2C subtilisin-chymotrypsin protease inhibitor 2%2C similar to RCD one 1a;Note=Chymotrypsin protease inhibitor%2C Salt and osmotic stress tolerance;Transcript_evidence=AK062495;ORF_evidence=Q5ZDX2;GO=Biological Process: response to wounding (GO:0009611),Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Proteinase inhibitor I13%2C potato inhibitor I superfamily (IPR036354),Proteinase inhibitor I13%2C potato inhibitor I (IPR000864);NIAS_FLcDNA=001-103-H12;Manual Curation=September 21%2C 2018;Literature_PMID=29260397,25910649;Oryzabase=22313;Expression=AK062495;TENOR=Os01t0615100-01;KEGG=Os01t0615100-01;Subcellular location=cytosol (GO:0005829)
Chr01	irgsp1_rep	five_prime_UTR	24392841	24392941	.	+	.	Parent=Os01t0615100-01
Chr01	irgsp1_rep	five_prime_UTR	24393039	24393070	.	+	.	Parent=Os01t0615100-01
Chr01	irgsp1_rep	CDS	24393071	24393289	.	+	0	Parent=Os01t0615100-01
Chr01	irgsp1_rep	three_prime_UTR	24393290	24393423	.	+	.	Parent=Os01t0615100-01
Chr01	irgsp1_rep	mRNA	24395081	24396820	.	-	.	ID=Os01t0615200-01;Name=Os01t0615200-01;Locus_id=Os01g0615200;CGSNL Gene Symbol=AT2;CGSNL Gene Name=ACYLTRANSFERASE 2;Oryzabase Gene Symbol Synonym(s)=OsAT2%2C OsAt2;Oryzabase Gene Name Synonym(s)=acyltransferase 2;Note=Transferase family protein.;Transcript_evidence=AK287601 (DDBJ%2C Best hit);ORF_evidence=NP_001151172.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J065053E02;Oryzabase=11734;TENOR=Os01t0615200-01;KEGG=Os01t0615200-01
Chr01	irgsp1_rep	five_prime_UTR	24396757	24396820	.	-	.	Parent=Os01t0615200-01
Chr01	irgsp1_rep	CDS	24396274	24396756	.	-	0	Parent=Os01t0615200-01
Chr01	irgsp1_rep	CDS	24395293	24396150	.	-	0	Parent=Os01t0615200-01
Chr01	irgsp1_rep	three_prime_UTR	24395081	24395292	.	-	.	Parent=Os01t0615200-01
Chr01	irgsp1_rep	mRNA	24395291	24396703	.	+	.	ID=Os01t0615250-00;Name=Os01t0615250-00;Locus_id=Os01g0615250;Note=Hypothetical protein.;Transcript_evidence=AK360634 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0615250-00
Chr01	irgsp1_rep	five_prime_UTR	24395291	24395292	.	+	.	Parent=Os01t0615250-00
Chr01	irgsp1_rep	CDS	24395293	24396152	.	+	0	Parent=Os01t0615250-00
Chr01	irgsp1_rep	CDS	24396279	24396703	.	+	1	Parent=Os01t0615250-00
Chr01	irgsp1_rep	mRNA	24397592	24400652	.	-	.	ID=Os01t0615300-01;Name=Os01t0615300-01;Locus_id=Os01g0615300;CGSNL Gene Symbol=AT1;CGSNL Gene Name=ACYLTRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=OsAT1%2C OsAt1;Oryzabase Gene Name Synonym(s)=acyltransferase 1;Note=Transferase family protein.;Transcript_evidence=AK069226 (DDBJ%2C Best hit);ORF_evidence=NP_001150503.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J023014K19;Oryzabase=11733;Expression=AK069226;TENOR=Os01t0615300-01;KEGG=Os01t0615300-01
Chr01	irgsp1_rep	five_prime_UTR	24400579	24400652	.	-	.	Parent=Os01t0615300-01
Chr01	irgsp1_rep	CDS	24400147	24400578	.	-	0	Parent=Os01t0615300-01
Chr01	irgsp1_rep	CDS	24397804	24398646	.	-	0	Parent=Os01t0615300-01
Chr01	irgsp1_rep	three_prime_UTR	24397592	24397803	.	-	.	Parent=Os01t0615300-01
Chr01	irgsp1_rep	mRNA	24397564	24400619	.	-	.	ID=Os01t0615300-02;Name=Os01t0615300-02;Locus_id=Os01g0615300;CGSNL Gene Symbol=AT1;CGSNL Gene Name=ACYLTRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=OsAT1%2C OsAt1;Oryzabase Gene Name Synonym(s)=acyltransferase 1;Note=Transferase family protein.;Transcript_evidence=AK061211 (DDBJ%2C Best hit);ORF_evidence=NP_001150503.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=006-210-D05;Oryzabase=11733;Expression=AK061211;TENOR=Os01t0615300-02;KEGG=Os01t0615300-02
Chr01	irgsp1_rep	five_prime_UTR	24400579	24400619	.	-	.	Parent=Os01t0615300-02
Chr01	irgsp1_rep	CDS	24400147	24400578	.	-	0	Parent=Os01t0615300-02
Chr01	irgsp1_rep	CDS	24397804	24398646	.	-	0	Parent=Os01t0615300-02
Chr01	irgsp1_rep	three_prime_UTR	24397564	24397803	.	-	.	Parent=Os01t0615300-02
Chr01	irgsp1_rep	mRNA	24397782	24400564	.	+	.	ID=Os01t0615400-00;Name=Os01t0615400-00;Locus_id=Os01g0615400;Note=Hypothetical protein.;Transcript_evidence=AK360634 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0615400-00
Chr01	irgsp1_rep	five_prime_UTR	24397782	24398323	.	+	.	Parent=Os01t0615400-00
Chr01	irgsp1_rep	CDS	24398324	24398599	.	+	0	Parent=Os01t0615400-00
Chr01	irgsp1_rep	three_prime_UTR	24398600	24398643	.	+	.	Parent=Os01t0615400-00
Chr01	irgsp1_rep	three_prime_UTR	24400144	24400564	.	+	.	Parent=Os01t0615400-00
Chr01	irgsp1_rep	mRNA	24408462	24410310	.	-	.	ID=Os01t0615500-00;Name=Os01t0615500-00;Locus_id=Os01g0615500;CGSNL Gene Symbol=ABCG2;CGSNL Gene Name=ABC TRANSPORTER G FAMILY MEMBER 2;Oryzabase Gene Symbol Synonym(s)=OsABCG2;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 2;Note=ABC transporter-like domain containing protein.;Transcript_evidence=AK367501 (DDBJ);ORF_evidence=NP_001147924.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC-2 type transporter (IPR013525),ABC transporter%2C conserved site (IPR017871);Oryzabase=11982;TENOR=Os01t0615500-00;KEGG=Os01t0615500-00
Chr01	irgsp1_rep	CDS	24408469	24410310	.	-	0	Parent=Os01t0615500-00
Chr01	irgsp1_rep	three_prime_UTR	24408462	24408468	.	-	.	Parent=Os01t0615500-00
Chr01	irgsp1_rep	mRNA	24418549	24419274	.	-	.	ID=Os01t0615850-01;Name=Os01t0615850-01;Locus_id=Os01g0615850;Note=Hypothetical gene.;Transcript_evidence=AK241943 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J075088K20;TENOR=Os01t0615850-01;KEGG=Os01t0615850-01
Chr01	irgsp1_rep	five_prime_UTR	24418882	24419274	.	-	.	Parent=Os01t0615850-01
Chr01	irgsp1_rep	CDS	24418645	24418881	.	-	0	Parent=Os01t0615850-01
Chr01	irgsp1_rep	three_prime_UTR	24418549	24418644	.	-	.	Parent=Os01t0615850-01
Chr01	irgsp1_rep	mRNA	24430016	24436246	.	+	.	ID=Os01t0616100-01;Name=Os01t0616100-01;Locus_id=Os01g0616100;Note=Similar to kinase family protein.;Transcript_evidence=AK105714 (DDBJ%2C Best hit);ORF_evidence=XP_002888835.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-201-F01;TENOR=Os01t0616100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	24430016	24430096	.	+	0	Parent=Os01t0616100-01
Chr01	irgsp1_rep	CDS	24430564	24430746	.	+	0	Parent=Os01t0616100-01
Chr01	irgsp1_rep	CDS	24430955	24431081	.	+	0	Parent=Os01t0616100-01
Chr01	irgsp1_rep	CDS	24431225	24431286	.	+	2	Parent=Os01t0616100-01
Chr01	irgsp1_rep	CDS	24431527	24431613	.	+	0	Parent=Os01t0616100-01
Chr01	irgsp1_rep	CDS	24432592	24432678	.	+	0	Parent=Os01t0616100-01
Chr01	irgsp1_rep	CDS	24433099	24433212	.	+	0	Parent=Os01t0616100-01
Chr01	irgsp1_rep	CDS	24433396	24433524	.	+	0	Parent=Os01t0616100-01
Chr01	irgsp1_rep	CDS	24433723	24433785	.	+	0	Parent=Os01t0616100-01
Chr01	irgsp1_rep	CDS	24434222	24434383	.	+	0	Parent=Os01t0616100-01
Chr01	irgsp1_rep	CDS	24434500	24434618	.	+	0	Parent=Os01t0616100-01
Chr01	irgsp1_rep	CDS	24434690	24435683	.	+	1	Parent=Os01t0616100-01
Chr01	irgsp1_rep	three_prime_UTR	24435684	24436246	.	+	.	Parent=Os01t0616100-01
Chr01	irgsp1_rep	mRNA	24434901	24436025	.	+	.	ID=Os01t0616100-02;Name=Os01t0616100-02;Locus_id=Os01g0616100;Note=Hypothetical conserved gene.;Transcript_evidence=AK058983 (DDBJ%2C Best hit);ORF_evidence=Q5ZDJ9 (UniProt);NIAS_FLcDNA=001-020-E02;Expression=AK058983;TENOR=Os01t0616100-02;KEGG=Os01t0616100-02
Chr01	irgsp1_rep	CDS	24434901	24435683	.	+	0	Parent=Os01t0616100-02
Chr01	irgsp1_rep	three_prime_UTR	24435684	24436025	.	+	.	Parent=Os01t0616100-02
Chr01	irgsp1_rep	mRNA	24460869	24465037	.	+	.	ID=Os01t0616300-01;Name=Os01t0616300-01;Locus_id=Os01g0616300;Note=Thioredoxin%2C core domain containing protein.;Transcript_evidence=AK242182 (DDBJ%2C Best hit);ORF_evidence=B6U8P1 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454);InterPro=Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766);NIAS_FLcDNA=J075161B03;TENOR=Os01t0616300-01;KEGG=Os01t0616300-01
Chr01	irgsp1_rep	five_prime_UTR	24460869	24460997	.	+	.	Parent=Os01t0616300-01
Chr01	irgsp1_rep	CDS	24460998	24461008	.	+	0	Parent=Os01t0616300-01
Chr01	irgsp1_rep	CDS	24464002	24464017	.	+	1	Parent=Os01t0616300-01
Chr01	irgsp1_rep	CDS	24464109	24464270	.	+	0	Parent=Os01t0616300-01
Chr01	irgsp1_rep	three_prime_UTR	24464271	24465037	.	+	.	Parent=Os01t0616300-01
Chr01	irgsp1_rep	mRNA	24461529	24463106	.	+	.	ID=Os01t0616333-01;Name=Os01t0616333-01;Locus_id=Os01g0616333;Note=Similar to Electron transporter.;Transcript_evidence=AK289088 (DDBJ%2C Best hit);ORF_evidence=B6U8P1 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide TPR-1 (IPR001440),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J090095L06;TENOR=Os01t0616333-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	24461529	24461558	.	+	.	Parent=Os01t0616333-01
Chr01	irgsp1_rep	CDS	24461559	24461924	.	+	0	Parent=Os01t0616333-01
Chr01	irgsp1_rep	three_prime_UTR	24461925	24463106	.	+	.	Parent=Os01t0616333-01
Chr01	irgsp1_rep	mRNA	24461229	24464251	.	-	.	ID=Os01t0616366-00;Name=Os01t0616366-00;Locus_id=Os01g0616366;Note=Hypothetical protein.;Transcript_evidence=tplb0021m04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0616366-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	24464104	24464251	.	-	.	Parent=Os01t0616366-00
Chr01	irgsp1_rep	five_prime_UTR	24463885	24464011	.	-	.	Parent=Os01t0616366-00
Chr01	irgsp1_rep	five_prime_UTR	24463493	24463682	.	-	.	Parent=Os01t0616366-00
Chr01	irgsp1_rep	five_prime_UTR	24463057	24463382	.	-	.	Parent=Os01t0616366-00
Chr01	irgsp1_rep	five_prime_UTR	24462762	24462966	.	-	.	Parent=Os01t0616366-00
Chr01	irgsp1_rep	five_prime_UTR	24462502	24462688	.	-	.	Parent=Os01t0616366-00
Chr01	irgsp1_rep	CDS	24462495	24462501	.	-	0	Parent=Os01t0616366-00
Chr01	irgsp1_rep	CDS	24461229	24461911	.	-	2	Parent=Os01t0616366-00
Chr01	irgsp1_rep	mRNA	24471931	24478431	.	-	.	ID=Os01t0616400-01;Name=Os01t0616400-01;Locus_id=Os01g0616400;CGSNL Gene Symbol=C3H8;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 8;Oryzabase Gene Symbol Synonym(s)=OsC3H8;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 8;Note=Similar to Floral homeotic protein HUA1.;Transcript_evidence=AK112116 (DDBJ%2C Best hit);ORF_evidence=B7F419 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=002-103-E06;Oryzabase=8634;Expression=AK112116;TENOR=Os01t0616400-01;KEGG=Os01t0616400-01
Chr01	irgsp1_rep	five_prime_UTR	24478337	24478431	.	-	.	Parent=Os01t0616400-01
Chr01	irgsp1_rep	CDS	24478147	24478336	.	-	0	Parent=Os01t0616400-01
Chr01	irgsp1_rep	CDS	24476796	24477037	.	-	2	Parent=Os01t0616400-01
Chr01	irgsp1_rep	CDS	24475564	24475617	.	-	0	Parent=Os01t0616400-01
Chr01	irgsp1_rep	CDS	24475393	24475491	.	-	0	Parent=Os01t0616400-01
Chr01	irgsp1_rep	CDS	24475241	24475300	.	-	0	Parent=Os01t0616400-01
Chr01	irgsp1_rep	CDS	24474939	24475157	.	-	0	Parent=Os01t0616400-01
Chr01	irgsp1_rep	CDS	24474575	24474612	.	-	0	Parent=Os01t0616400-01
Chr01	irgsp1_rep	CDS	24474426	24474472	.	-	1	Parent=Os01t0616400-01
Chr01	irgsp1_rep	CDS	24473074	24473189	.	-	2	Parent=Os01t0616400-01
Chr01	irgsp1_rep	CDS	24472939	24472992	.	-	0	Parent=Os01t0616400-01
Chr01	irgsp1_rep	CDS	24472683	24472829	.	-	0	Parent=Os01t0616400-01
Chr01	irgsp1_rep	CDS	24472218	24472337	.	-	0	Parent=Os01t0616400-01
Chr01	irgsp1_rep	three_prime_UTR	24471931	24472217	.	-	.	Parent=Os01t0616400-01
Chr01	irgsp1_rep	mRNA	24471977	24478429	.	-	.	ID=Os01t0616400-02;Name=Os01t0616400-02;Locus_id=Os01g0616400;CGSNL Gene Symbol=C3H8;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 8;Oryzabase Gene Symbol Synonym(s)=OsC3H8;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 8;Note=Hypothetical conserved gene.;Transcript_evidence=AK111682 (DDBJ%2C Best hit);ORF_evidence=Q5ZDJ6 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=J013159G03;Oryzabase=8634;Expression=AK111682;TENOR=Os01t0616400-02;KEGG=Os01t0616400-02
Chr01	irgsp1_rep	five_prime_UTR	24478337	24478429	.	-	.	Parent=Os01t0616400-02
Chr01	irgsp1_rep	CDS	24478147	24478336	.	-	0	Parent=Os01t0616400-02
Chr01	irgsp1_rep	CDS	24476796	24477037	.	-	2	Parent=Os01t0616400-02
Chr01	irgsp1_rep	CDS	24475564	24475620	.	-	0	Parent=Os01t0616400-02
Chr01	irgsp1_rep	CDS	24475393	24475491	.	-	0	Parent=Os01t0616400-02
Chr01	irgsp1_rep	CDS	24475241	24475300	.	-	0	Parent=Os01t0616400-02
Chr01	irgsp1_rep	CDS	24474939	24475157	.	-	0	Parent=Os01t0616400-02
Chr01	irgsp1_rep	CDS	24474575	24474612	.	-	0	Parent=Os01t0616400-02
Chr01	irgsp1_rep	CDS	24474426	24474472	.	-	1	Parent=Os01t0616400-02
Chr01	irgsp1_rep	CDS	24473074	24473189	.	-	2	Parent=Os01t0616400-02
Chr01	irgsp1_rep	CDS	24472939	24472992	.	-	0	Parent=Os01t0616400-02
Chr01	irgsp1_rep	CDS	24472683	24472829	.	-	0	Parent=Os01t0616400-02
Chr01	irgsp1_rep	CDS	24472218	24472337	.	-	0	Parent=Os01t0616400-02
Chr01	irgsp1_rep	three_prime_UTR	24471977	24472217	.	-	.	Parent=Os01t0616400-02
Chr01	irgsp1_rep	mRNA	24480898	24483661	.	+	.	ID=Os01t0616500-01;Name=Os01t0616500-01;Locus_id=Os01g0616500;Note=Similar to 50S ribosomal protein L22.;Transcript_evidence=AK073157 (DDBJ%2C Best hit);ORF_evidence=NP_567805.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: large ribosomal subunit (GO:0015934),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L22/L17 (IPR001063),Ribosomal protein L22%2C bacterial-type (IPR005727);NIAS_FLcDNA=J033012O14;Expression=AK073157;TENOR=Os01t0616500-01;KEGG=Os01t0616500-01
Chr01	irgsp1_rep	five_prime_UTR	24480898	24481010	.	+	.	Parent=Os01t0616500-01
Chr01	irgsp1_rep	five_prime_UTR	24481106	24481116	.	+	.	Parent=Os01t0616500-01
Chr01	irgsp1_rep	CDS	24481117	24481264	.	+	0	Parent=Os01t0616500-01
Chr01	irgsp1_rep	CDS	24481712	24481794	.	+	2	Parent=Os01t0616500-01
Chr01	irgsp1_rep	CDS	24482122	24482280	.	+	0	Parent=Os01t0616500-01
Chr01	irgsp1_rep	CDS	24482771	24482881	.	+	0	Parent=Os01t0616500-01
Chr01	irgsp1_rep	CDS	24482987	24483053	.	+	0	Parent=Os01t0616500-01
Chr01	irgsp1_rep	CDS	24483158	24483426	.	+	2	Parent=Os01t0616500-01
Chr01	irgsp1_rep	three_prime_UTR	24483427	24483661	.	+	.	Parent=Os01t0616500-01
Chr01	irgsp1_rep	mRNA	24484515	24485903	.	+	.	ID=Os01t0616600-01;Name=Os01t0616600-01;Locus_id=Os01g0616600;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK063911 (DDBJ%2C Best hit),AK101490 (DDBJ%2C Best hit);ORF_evidence=B9EY26 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-123-A07,J033042I09;Expression=AK063911;TENOR=Os01t0616600-01;KEGG=Os01t0616600-01
Chr01	irgsp1_rep	five_prime_UTR	24484515	24484548	.	+	.	Parent=Os01t0616600-01
Chr01	irgsp1_rep	CDS	24484549	24485685	.	+	0	Parent=Os01t0616600-01
Chr01	irgsp1_rep	three_prime_UTR	24485686	24485903	.	+	.	Parent=Os01t0616600-01
Chr01	irgsp1_rep	mRNA	24496188	24497895	.	+	.	ID=Os01t0616800-01;Name=Os01t0616800-01;Locus_id=Os01g0616800;Note=Pentatricopeptide repeat containing protein.;Transcript_evidence=AK111368 (DDBJ%2C Best hit);ORF_evidence=A2WSM7 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=002-182-A02;Expression=AK111368;TENOR=Os01t0616800-01;KEGG=Os01t0616800-01
Chr01	irgsp1_rep	five_prime_UTR	24496188	24496225	.	+	.	Parent=Os01t0616800-01
Chr01	irgsp1_rep	CDS	24496226	24496942	.	+	0	Parent=Os01t0616800-01
Chr01	irgsp1_rep	three_prime_UTR	24496943	24496992	.	+	.	Parent=Os01t0616800-01
Chr01	irgsp1_rep	three_prime_UTR	24497624	24497895	.	+	.	Parent=Os01t0616800-01
Chr01	irgsp1_rep	mRNA	24498873	24504951	.	-	.	ID=Os01t0616900-00;Name=Os01t0616900-00;Locus_id=Os01g0616900;Note=Ctps protein.;Transcript_evidence=AK369234 (DDBJ);ORF_evidence=NP_001152016.1 (RefSeq);GO=Biological Process: pyrimidine nucleotide biosynthetic process (GO:0006221),Molecular Function: CTP synthase activity (GO:0003883);InterPro=CTP synthase (IPR004468),CTP synthase%2C N-terminal (IPR017456),Glutamine amidotransferase type 1 (IPR017926);TENOR=Os01t0616900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	24504552	24504951	.	-	0	Parent=Os01t0616900-00
Chr01	irgsp1_rep	CDS	24503161	24503240	.	-	2	Parent=Os01t0616900-00
Chr01	irgsp1_rep	CDS	24502989	24503075	.	-	0	Parent=Os01t0616900-00
Chr01	irgsp1_rep	CDS	24502513	24502563	.	-	0	Parent=Os01t0616900-00
Chr01	irgsp1_rep	CDS	24502298	24502415	.	-	0	Parent=Os01t0616900-00
Chr01	irgsp1_rep	CDS	24502132	24502188	.	-	2	Parent=Os01t0616900-00
Chr01	irgsp1_rep	CDS	24501964	24502028	.	-	2	Parent=Os01t0616900-00
Chr01	irgsp1_rep	CDS	24501740	24501823	.	-	0	Parent=Os01t0616900-00
Chr01	irgsp1_rep	CDS	24501591	24501641	.	-	0	Parent=Os01t0616900-00
Chr01	irgsp1_rep	CDS	24501433	24501495	.	-	0	Parent=Os01t0616900-00
Chr01	irgsp1_rep	CDS	24501289	24501335	.	-	0	Parent=Os01t0616900-00
Chr01	irgsp1_rep	CDS	24501122	24501191	.	-	1	Parent=Os01t0616900-00
Chr01	irgsp1_rep	CDS	24500982	24501044	.	-	0	Parent=Os01t0616900-00
Chr01	irgsp1_rep	CDS	24500800	24500889	.	-	0	Parent=Os01t0616900-00
Chr01	irgsp1_rep	CDS	24500686	24500724	.	-	0	Parent=Os01t0616900-00
Chr01	irgsp1_rep	CDS	24500341	24500568	.	-	0	Parent=Os01t0616900-00
Chr01	irgsp1_rep	CDS	24500170	24500255	.	-	0	Parent=Os01t0616900-00
Chr01	irgsp1_rep	CDS	24500019	24500067	.	-	1	Parent=Os01t0616900-00
Chr01	irgsp1_rep	CDS	24499795	24499875	.	-	0	Parent=Os01t0616900-00
Chr01	irgsp1_rep	CDS	24499622	24499715	.	-	0	Parent=Os01t0616900-00
Chr01	irgsp1_rep	CDS	24499288	24499484	.	-	2	Parent=Os01t0616900-00
Chr01	irgsp1_rep	three_prime_UTR	24498873	24499287	.	-	.	Parent=Os01t0616900-00
Chr01	irgsp1_rep	mRNA	24498883	24504674	.	+	.	ID=Os01t0617200-00;Name=Os01t0617200-00;Locus_id=Os01g0617200;Note=Hypothetical protein.;Transcript_evidence=tplb0056h06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0617200-00
Chr01	irgsp1_rep	five_prime_UTR	24498883	24499006	.	+	.	Parent=Os01t0617200-00
Chr01	irgsp1_rep	CDS	24499007	24499291	.	+	0	Parent=Os01t0617200-00
Chr01	irgsp1_rep	three_prime_UTR	24499292	24499492	.	+	.	Parent=Os01t0617200-00
Chr01	irgsp1_rep	three_prime_UTR	24499630	24499732	.	+	.	Parent=Os01t0617200-00
Chr01	irgsp1_rep	three_prime_UTR	24499812	24499877	.	+	.	Parent=Os01t0617200-00
Chr01	irgsp1_rep	three_prime_UTR	24500123	24500259	.	+	.	Parent=Os01t0617200-00
Chr01	irgsp1_rep	three_prime_UTR	24500346	24500582	.	+	.	Parent=Os01t0617200-00
Chr01	irgsp1_rep	three_prime_UTR	24500764	24500885	.	+	.	Parent=Os01t0617200-00
Chr01	irgsp1_rep	three_prime_UTR	24500977	24501041	.	+	.	Parent=Os01t0617200-00
Chr01	irgsp1_rep	three_prime_UTR	24501120	24501197	.	+	.	Parent=Os01t0617200-00
Chr01	irgsp1_rep	three_prime_UTR	24501297	24501332	.	+	.	Parent=Os01t0617200-00
Chr01	irgsp1_rep	three_prime_UTR	24501422	24501486	.	+	.	Parent=Os01t0617200-00
Chr01	irgsp1_rep	three_prime_UTR	24501583	24501637	.	+	.	Parent=Os01t0617200-00
Chr01	irgsp1_rep	three_prime_UTR	24501735	24501818	.	+	.	Parent=Os01t0617200-00
Chr01	irgsp1_rep	three_prime_UTR	24501956	24502040	.	+	.	Parent=Os01t0617200-00
Chr01	irgsp1_rep	three_prime_UTR	24502246	24502398	.	+	.	Parent=Os01t0617200-00
Chr01	irgsp1_rep	three_prime_UTR	24502492	24502565	.	+	.	Parent=Os01t0617200-00
Chr01	irgsp1_rep	three_prime_UTR	24502996	24503073	.	+	.	Parent=Os01t0617200-00
Chr01	irgsp1_rep	three_prime_UTR	24503159	24503240	.	+	.	Parent=Os01t0617200-00
Chr01	irgsp1_rep	three_prime_UTR	24504552	24504674	.	+	.	Parent=Os01t0617200-00
Chr01	irgsp1_rep	mRNA	24534950	24546684	.	-	.	ID=Os01t0617500-01;Name=Os01t0617500-01;Locus_id=Os01g0617500;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK065278 (DDBJ%2C Best hit);ORF_evidence=XP_002887831.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide TPR-1 (IPR001440),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734),Alpha-acetyltransferase 15%2C NatA (IPR021183);NIAS_FLcDNA=J013002L16;Expression=AK065278;TENOR=Os01t0617500-01;KEGG=Os01t0617500-01
Chr01	irgsp1_rep	five_prime_UTR	24546585	24546684	.	-	.	Parent=Os01t0617500-01
Chr01	irgsp1_rep	CDS	24546534	24546584	.	-	0	Parent=Os01t0617500-01
Chr01	irgsp1_rep	CDS	24545480	24545558	.	-	0	Parent=Os01t0617500-01
Chr01	irgsp1_rep	CDS	24545299	24545381	.	-	2	Parent=Os01t0617500-01
Chr01	irgsp1_rep	CDS	24545059	24545208	.	-	0	Parent=Os01t0617500-01
Chr01	irgsp1_rep	CDS	24544546	24544661	.	-	0	Parent=Os01t0617500-01
Chr01	irgsp1_rep	CDS	24544002	24544107	.	-	1	Parent=Os01t0617500-01
Chr01	irgsp1_rep	CDS	24543469	24543540	.	-	0	Parent=Os01t0617500-01
Chr01	irgsp1_rep	CDS	24543270	24543385	.	-	0	Parent=Os01t0617500-01
Chr01	irgsp1_rep	CDS	24541874	24542006	.	-	1	Parent=Os01t0617500-01
Chr01	irgsp1_rep	CDS	24541580	24541657	.	-	0	Parent=Os01t0617500-01
Chr01	irgsp1_rep	CDS	24541361	24541414	.	-	0	Parent=Os01t0617500-01
Chr01	irgsp1_rep	CDS	24541205	24541275	.	-	0	Parent=Os01t0617500-01
Chr01	irgsp1_rep	CDS	24540608	24540662	.	-	1	Parent=Os01t0617500-01
Chr01	irgsp1_rep	CDS	24540393	24540488	.	-	0	Parent=Os01t0617500-01
Chr01	irgsp1_rep	CDS	24539898	24540026	.	-	0	Parent=Os01t0617500-01
Chr01	irgsp1_rep	CDS	24539650	24539732	.	-	0	Parent=Os01t0617500-01
Chr01	irgsp1_rep	CDS	24539337	24539567	.	-	1	Parent=Os01t0617500-01
Chr01	irgsp1_rep	CDS	24539116	24539248	.	-	1	Parent=Os01t0617500-01
Chr01	irgsp1_rep	CDS	24538931	24539044	.	-	0	Parent=Os01t0617500-01
Chr01	irgsp1_rep	CDS	24538653	24538784	.	-	0	Parent=Os01t0617500-01
Chr01	irgsp1_rep	CDS	24537716	24537772	.	-	0	Parent=Os01t0617500-01
Chr01	irgsp1_rep	CDS	24536840	24536937	.	-	0	Parent=Os01t0617500-01
Chr01	irgsp1_rep	CDS	24536714	24536772	.	-	1	Parent=Os01t0617500-01
Chr01	irgsp1_rep	CDS	24536510	24536621	.	-	2	Parent=Os01t0617500-01
Chr01	irgsp1_rep	CDS	24536327	24536427	.	-	1	Parent=Os01t0617500-01
Chr01	irgsp1_rep	CDS	24535543	24535763	.	-	2	Parent=Os01t0617500-01
Chr01	irgsp1_rep	three_prime_UTR	24534950	24535542	.	-	.	Parent=Os01t0617500-01
Chr01	irgsp1_rep	mRNA	24534886	24539237	.	-	.	ID=Os01t0617500-02;Name=Os01t0617500-02;Locus_id=Os01g0617500;Note=Similar to predicted protein.;Transcript_evidence=AK111993 (DDBJ%2C Best hit);ORF_evidence=XP_002887831.1 (RefSeq);InterPro=Alpha-acetyltransferase 15%2C NatA (IPR021183);NIAS_FLcDNA=001-033-D04;Expression=AK111993;TENOR=Os01t0617500-02;KEGG=Os01t0617500-02
Chr01	irgsp1_rep	five_prime_UTR	24539236	24539237	.	-	.	Parent=Os01t0617500-02
Chr01	irgsp1_rep	CDS	24539116	24539235	.	-	0	Parent=Os01t0617500-02
Chr01	irgsp1_rep	CDS	24538931	24539044	.	-	0	Parent=Os01t0617500-02
Chr01	irgsp1_rep	CDS	24538653	24538784	.	-	0	Parent=Os01t0617500-02
Chr01	irgsp1_rep	CDS	24537716	24537772	.	-	0	Parent=Os01t0617500-02
Chr01	irgsp1_rep	CDS	24536840	24536937	.	-	0	Parent=Os01t0617500-02
Chr01	irgsp1_rep	CDS	24536714	24536772	.	-	1	Parent=Os01t0617500-02
Chr01	irgsp1_rep	CDS	24536510	24536621	.	-	2	Parent=Os01t0617500-02
Chr01	irgsp1_rep	CDS	24536327	24536427	.	-	1	Parent=Os01t0617500-02
Chr01	irgsp1_rep	CDS	24535543	24535763	.	-	2	Parent=Os01t0617500-02
Chr01	irgsp1_rep	three_prime_UTR	24534886	24535542	.	-	.	Parent=Os01t0617500-02
Chr01	irgsp1_rep	mRNA	24549202	24554122	.	-	.	ID=Os01t0617600-00;Name=Os01t0617600-00;Locus_id=Os01g0617600;Note=Plant organelle RNA recognition domain domain containing protein.;Transcript_evidence=AK358476 (DDBJ);ORF_evidence=NP_001043583.2 (RefSeq);InterPro=Plant organelle RNA recognition domain (IPR021099);TENOR=Os01t0617600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	24552590	24554122	.	-	0	Parent=Os01t0617600-00
Chr01	irgsp1_rep	three_prime_UTR	24552120	24552589	.	-	.	Parent=Os01t0617600-00
Chr01	irgsp1_rep	three_prime_UTR	24549729	24549859	.	-	.	Parent=Os01t0617600-00
Chr01	irgsp1_rep	three_prime_UTR	24549202	24549499	.	-	.	Parent=Os01t0617600-00
Chr01	irgsp1_rep	mRNA	24554321	24555469	.	-	.	ID=Os01t0617650-00;Name=Os01t0617650-00;Locus_id=Os01g0617650;Note=Similar to AAP4%3B acidic amino acid transmembrane transporter/ amino acid transmembrane transporter/ neutral amino acid transmembrane transporter/ primary active transmembrane transporter.;Transcript_evidence=BT054275 (DDBJ);ORF_evidence=NP_201190.1 (RefSeq);InterPro=Amino acid transporter%2C transmembrane (IPR013057);TENOR=Os01t0617650-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	24555284	24555469	.	-	.	Parent=Os01t0617650-00
Chr01	irgsp1_rep	CDS	24554321	24555283	.	-	0	Parent=Os01t0617650-00
Chr01	irgsp1_rep	mRNA	24559329	24568659	.	+	.	ID=Os01t0617700-01;Name=Os01t0617700-01;Locus_id=Os01g0617700;Oryzabase Gene Symbol Synonym(s)=CENP-C;Oryzabase Gene Name Synonym(s)=centromere protein C;Note=Similar to CENP-C (Fragment).;Transcript_evidence=AK073890 (DDBJ%2C Best hit);ORF_evidence=Q66LI2 (UniProt);NIAS_FLcDNA=J033075H13;Oryzabase=14057;Expression=AK073890;TENOR=Os01t0617700-01;KEGG=Os01t0617700-01
Chr01	irgsp1_rep	five_prime_UTR	24559329	24559382	.	+	.	Parent=Os01t0617700-01
Chr01	irgsp1_rep	CDS	24559383	24559526	.	+	0	Parent=Os01t0617700-01
Chr01	irgsp1_rep	CDS	24559773	24559960	.	+	0	Parent=Os01t0617700-01
Chr01	irgsp1_rep	CDS	24560084	24560169	.	+	1	Parent=Os01t0617700-01
Chr01	irgsp1_rep	CDS	24560248	24560350	.	+	2	Parent=Os01t0617700-01
Chr01	irgsp1_rep	CDS	24560687	24560889	.	+	1	Parent=Os01t0617700-01
Chr01	irgsp1_rep	CDS	24560966	24561570	.	+	2	Parent=Os01t0617700-01
Chr01	irgsp1_rep	CDS	24561673	24561807	.	+	0	Parent=Os01t0617700-01
Chr01	irgsp1_rep	CDS	24561929	24561956	.	+	0	Parent=Os01t0617700-01
Chr01	irgsp1_rep	CDS	24563406	24563485	.	+	2	Parent=Os01t0617700-01
Chr01	irgsp1_rep	CDS	24563762	24563864	.	+	0	Parent=Os01t0617700-01
Chr01	irgsp1_rep	CDS	24564442	24564524	.	+	2	Parent=Os01t0617700-01
Chr01	irgsp1_rep	CDS	24564804	24564906	.	+	0	Parent=Os01t0617700-01
Chr01	irgsp1_rep	CDS	24565485	24565609	.	+	2	Parent=Os01t0617700-01
Chr01	irgsp1_rep	CDS	24565890	24565992	.	+	0	Parent=Os01t0617700-01
Chr01	irgsp1_rep	CDS	24566536	24566615	.	+	2	Parent=Os01t0617700-01
Chr01	irgsp1_rep	CDS	24566984	24567095	.	+	0	Parent=Os01t0617700-01
Chr01	irgsp1_rep	CDS	24567211	24567318	.	+	2	Parent=Os01t0617700-01
Chr01	irgsp1_rep	CDS	24568210	24568334	.	+	2	Parent=Os01t0617700-01
Chr01	irgsp1_rep	three_prime_UTR	24568335	24568659	.	+	.	Parent=Os01t0617700-01
Chr01	irgsp1_rep	mRNA	24569001	24571535	.	-	.	ID=Os01t0617800-01;Name=Os01t0617800-01;Locus_id=Os01g0617800;Note=Conserved hypothetical protein.;Transcript_evidence=AK101407 (DDBJ%2C Best hit);ORF_evidence=A2WSN2 (UniProt);NIAS_FLcDNA=J033037H17;Expression=AK101407;TENOR=Os01t0617800-01;KEGG=Os01t0617800-01
Chr01	irgsp1_rep	five_prime_UTR	24571387	24571535	.	-	.	Parent=Os01t0617800-01
Chr01	irgsp1_rep	CDS	24571323	24571386	.	-	0	Parent=Os01t0617800-01
Chr01	irgsp1_rep	CDS	24571148	24571240	.	-	2	Parent=Os01t0617800-01
Chr01	irgsp1_rep	CDS	24569857	24569927	.	-	2	Parent=Os01t0617800-01
Chr01	irgsp1_rep	CDS	24569705	24569770	.	-	0	Parent=Os01t0617800-01
Chr01	irgsp1_rep	CDS	24569362	24569616	.	-	0	Parent=Os01t0617800-01
Chr01	irgsp1_rep	three_prime_UTR	24569001	24569361	.	-	.	Parent=Os01t0617800-01
Chr01	irgsp1_rep	mRNA	24572983	24575556	.	+	.	ID=Os01t0617900-01;Name=Os01t0617900-01;Locus_id=Os01g0617900;Note=Similar to oxygen-evolving complex-related.;Transcript_evidence=AK109342 (DDBJ%2C Best hit);ORF_evidence=NP_196706.2 (RefSeq);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: oxygen evolving complex (GO:0009654),Cellular Component: extrinsic to membrane (GO:0019898),Molecular Function: calcium ion binding (GO:0005509);InterPro=Photosystem II PsbP%2C oxygen evolving complex (IPR002683),Mog1/PsbP%2C alpha/beta/alpha sandwich (IPR016123),Mog1/PsbP/DUF1795%2C alpha/beta/alpha sandwich (IPR016124);NIAS_FLcDNA=006-202-F07;Oryzabase=22438;TENOR=Os01t0617900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	24572983	24573065	.	+	.	Parent=Os01t0617900-01
Chr01	irgsp1_rep	CDS	24573066	24573351	.	+	0	Parent=Os01t0617900-01
Chr01	irgsp1_rep	CDS	24573707	24573827	.	+	2	Parent=Os01t0617900-01
Chr01	irgsp1_rep	CDS	24573922	24573971	.	+	1	Parent=Os01t0617900-01
Chr01	irgsp1_rep	CDS	24574092	24574159	.	+	2	Parent=Os01t0617900-01
Chr01	irgsp1_rep	CDS	24574388	24574486	.	+	0	Parent=Os01t0617900-01
Chr01	irgsp1_rep	CDS	24574577	24574636	.	+	0	Parent=Os01t0617900-01
Chr01	irgsp1_rep	CDS	24574752	24574811	.	+	0	Parent=Os01t0617900-01
Chr01	irgsp1_rep	CDS	24574964	24575018	.	+	0	Parent=Os01t0617900-01
Chr01	irgsp1_rep	CDS	24575106	24575155	.	+	2	Parent=Os01t0617900-01
Chr01	irgsp1_rep	CDS	24575276	24575374	.	+	0	Parent=Os01t0617900-01
Chr01	irgsp1_rep	three_prime_UTR	24575375	24575556	.	+	.	Parent=Os01t0617900-01
Chr01	irgsp1_rep	mRNA	24572993	24575518	.	+	.	ID=Os01t0617900-02;Name=Os01t0617900-02;Locus_id=Os01g0617900;Note=Similar to predicted protein.;Transcript_evidence=AK071226 (DDBJ%2C Best hit);ORF_evidence=NP_196706.2 (RefSeq);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: oxygen evolving complex (GO:0009654),Cellular Component: extrinsic to membrane (GO:0019898),Molecular Function: calcium ion binding (GO:0005509);InterPro=Photosystem II PsbP%2C oxygen evolving complex (IPR002683),Mog1/PsbP%2C alpha/beta/alpha sandwich (IPR016123),Mog1/PsbP/DUF1795%2C alpha/beta/alpha sandwich (IPR016124);NIAS_FLcDNA=J023086L13;Oryzabase=22438;Expression=AK071226;TENOR=Os01t0617900-02;KEGG=Os01t0617900-02
Chr01	irgsp1_rep	five_prime_UTR	24572993	24573065	.	+	.	Parent=Os01t0617900-02
Chr01	irgsp1_rep	CDS	24573066	24573351	.	+	0	Parent=Os01t0617900-02
Chr01	irgsp1_rep	CDS	24573707	24573827	.	+	2	Parent=Os01t0617900-02
Chr01	irgsp1_rep	CDS	24573922	24573971	.	+	1	Parent=Os01t0617900-02
Chr01	irgsp1_rep	CDS	24574092	24574159	.	+	2	Parent=Os01t0617900-02
Chr01	irgsp1_rep	CDS	24574388	24574486	.	+	0	Parent=Os01t0617900-02
Chr01	irgsp1_rep	CDS	24574580	24574636	.	+	0	Parent=Os01t0617900-02
Chr01	irgsp1_rep	CDS	24574752	24574811	.	+	0	Parent=Os01t0617900-02
Chr01	irgsp1_rep	CDS	24574964	24575018	.	+	0	Parent=Os01t0617900-02
Chr01	irgsp1_rep	CDS	24575106	24575155	.	+	2	Parent=Os01t0617900-02
Chr01	irgsp1_rep	CDS	24575276	24575374	.	+	0	Parent=Os01t0617900-02
Chr01	irgsp1_rep	three_prime_UTR	24575375	24575518	.	+	.	Parent=Os01t0617900-02
Chr01	irgsp1_rep	mRNA	24573017	24575518	.	+	.	ID=Os01t0617900-03;Name=Os01t0617900-03;Locus_id=Os01g0617900;Note=Similar to oxygen-evolving complex-related.;Transcript_evidence=AK068647 (DDBJ%2C Best hit);ORF_evidence=NP_196706.2 (RefSeq);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: oxygen evolving complex (GO:0009654),Cellular Component: extrinsic to membrane (GO:0019898),Molecular Function: calcium ion binding (GO:0005509);InterPro=Photosystem II PsbP%2C oxygen evolving complex (IPR002683),Mog1/PsbP%2C alpha/beta/alpha sandwich (IPR016123),Mog1/PsbP/DUF1795%2C alpha/beta/alpha sandwich (IPR016124);NIAS_FLcDNA=J013158N13;Oryzabase=22438;TENOR=Os01t0617900-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	24573017	24573065	.	+	.	Parent=Os01t0617900-03
Chr01	irgsp1_rep	CDS	24573066	24573351	.	+	0	Parent=Os01t0617900-03
Chr01	irgsp1_rep	CDS	24573707	24573827	.	+	2	Parent=Os01t0617900-03
Chr01	irgsp1_rep	CDS	24573922	24573971	.	+	1	Parent=Os01t0617900-03
Chr01	irgsp1_rep	CDS	24574092	24574159	.	+	2	Parent=Os01t0617900-03
Chr01	irgsp1_rep	CDS	24574388	24574486	.	+	0	Parent=Os01t0617900-03
Chr01	irgsp1_rep	CDS	24574577	24574636	.	+	0	Parent=Os01t0617900-03
Chr01	irgsp1_rep	CDS	24574752	24574811	.	+	0	Parent=Os01t0617900-03
Chr01	irgsp1_rep	CDS	24574964	24575018	.	+	0	Parent=Os01t0617900-03
Chr01	irgsp1_rep	CDS	24575106	24575155	.	+	2	Parent=Os01t0617900-03
Chr01	irgsp1_rep	CDS	24575276	24575374	.	+	0	Parent=Os01t0617900-03
Chr01	irgsp1_rep	three_prime_UTR	24575375	24575518	.	+	.	Parent=Os01t0617900-03
Chr01	irgsp1_rep	mRNA	24573161	24575450	.	-	.	ID=Os01t0617950-00;Name=Os01t0617950-00;Locus_id=Os01g0617950;Note=Non-protein coding transcript.;Transcript_evidence=BT019249 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0617950-00
Chr01	irgsp1_rep	exon	24575272	24575450	.	-	.	Parent=Os01t0617950-00
Chr01	irgsp1_rep	exon	24575087	24575153	.	-	.	Parent=Os01t0617950-00
Chr01	irgsp1_rep	exon	24574974	24575003	.	-	.	Parent=Os01t0617950-00
Chr01	irgsp1_rep	exon	24574732	24574819	.	-	.	Parent=Os01t0617950-00
Chr01	irgsp1_rep	exon	24574562	24574626	.	-	.	Parent=Os01t0617950-00
Chr01	irgsp1_rep	exon	24574380	24574478	.	-	.	Parent=Os01t0617950-00
Chr01	irgsp1_rep	exon	24574090	24574155	.	-	.	Parent=Os01t0617950-00
Chr01	irgsp1_rep	exon	24573921	24573968	.	-	.	Parent=Os01t0617950-00
Chr01	irgsp1_rep	exon	24573710	24573826	.	-	.	Parent=Os01t0617950-00
Chr01	irgsp1_rep	exon	24573161	24573354	.	-	.	Parent=Os01t0617950-00
Chr01	irgsp1_rep	mRNA	24575726	24576859	.	-	.	ID=Os01t0618000-01;Name=Os01t0618000-01;Locus_id=Os01g0618000;Note=Exonuclease domain containing protein.;Transcript_evidence=AK064632 (DDBJ%2C Best hit);ORF_evidence=A2ZVG0 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: exonuclease activity (GO:0004527);InterPro=Exonuclease (IPR006055),Ribonuclease H-like (IPR012337),Exonuclease%2C RNase T/DNA polymerase III (IPR013520);NIAS_FLcDNA=002-113-H01;Expression=AK064632;TENOR=Os01t0618000-01;KEGG=Os01t0618000-01
Chr01	irgsp1_rep	five_prime_UTR	24576771	24576859	.	-	.	Parent=Os01t0618000-01
Chr01	irgsp1_rep	CDS	24575856	24576770	.	-	0	Parent=Os01t0618000-01
Chr01	irgsp1_rep	three_prime_UTR	24575726	24575855	.	-	.	Parent=Os01t0618000-01
Chr01	irgsp1_rep	mRNA	24579647	24582075	.	-	.	ID=Os01t0618100-01;Name=Os01t0618100-01;Locus_id=Os01g0618100;Note=Similar to IN2-2 protein.;Transcript_evidence=AK100460 (DDBJ%2C Best hit);ORF_evidence=B6TJT2 (UniProt);InterPro=Aldo/keto reductase (IPR001395),NADP-dependent oxidoreductase domain (IPR023210);NIAS_FLcDNA=J023091N11;Expression=AK100460;TENOR=Os01t0618100-01;KEGG=Os01t0618100-01
Chr01	irgsp1_rep	five_prime_UTR	24581974	24582075	.	-	.	Parent=Os01t0618100-01
Chr01	irgsp1_rep	CDS	24581911	24581973	.	-	0	Parent=Os01t0618100-01
Chr01	irgsp1_rep	CDS	24581614	24581781	.	-	0	Parent=Os01t0618100-01
Chr01	irgsp1_rep	CDS	24581315	24581518	.	-	0	Parent=Os01t0618100-01
Chr01	irgsp1_rep	CDS	24581031	24581203	.	-	0	Parent=Os01t0618100-01
Chr01	irgsp1_rep	CDS	24580853	24580949	.	-	1	Parent=Os01t0618100-01
Chr01	irgsp1_rep	CDS	24580610	24580763	.	-	0	Parent=Os01t0618100-01
Chr01	irgsp1_rep	CDS	24579835	24580010	.	-	2	Parent=Os01t0618100-01
Chr01	irgsp1_rep	three_prime_UTR	24579647	24579834	.	-	.	Parent=Os01t0618100-01
Chr01	irgsp1_rep	mRNA	24584355	24589429	.	+	.	ID=Os01t0618200-01;Name=Os01t0618200-01;Locus_id=Os01g0618200;Oryzabase Gene Symbol Synonym(s)=OsPP2C07%2C PP2C07%2C OsPP2C7%2C PP2C7%2C OsPP11%2C PP11;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C07%2C protein phosphatase 2C 07%2C protein phosphatase 2C7%2C protein phosphatase 2C 7%2C protein phosphatase 11;Note=Protein phosphatase 2C family protein.;Transcript_evidence=AK102319 (DDBJ%2C Best hit);ORF_evidence=B6TPM6 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J033090G17;Oryzabase=17885;Expression=AK102319;TENOR=Os01t0618200-01;KEGG=Os01t0618200-01
Chr01	irgsp1_rep	five_prime_UTR	24584355	24584514	.	+	.	Parent=Os01t0618200-01
Chr01	irgsp1_rep	five_prime_UTR	24584619	24584653	.	+	.	Parent=Os01t0618200-01
Chr01	irgsp1_rep	CDS	24584654	24584979	.	+	0	Parent=Os01t0618200-01
Chr01	irgsp1_rep	CDS	24586628	24586755	.	+	1	Parent=Os01t0618200-01
Chr01	irgsp1_rep	CDS	24586827	24586932	.	+	2	Parent=Os01t0618200-01
Chr01	irgsp1_rep	CDS	24587015	24587018	.	+	1	Parent=Os01t0618200-01
Chr01	irgsp1_rep	three_prime_UTR	24587019	24587173	.	+	.	Parent=Os01t0618200-01
Chr01	irgsp1_rep	three_prime_UTR	24588002	24588088	.	+	.	Parent=Os01t0618200-01
Chr01	irgsp1_rep	three_prime_UTR	24588213	24588304	.	+	.	Parent=Os01t0618200-01
Chr01	irgsp1_rep	three_prime_UTR	24588459	24588533	.	+	.	Parent=Os01t0618200-01
Chr01	irgsp1_rep	three_prime_UTR	24589146	24589429	.	+	.	Parent=Os01t0618200-01
Chr01	irgsp1_rep	mRNA	24592460	24596220	.	-	.	ID=Os01t0618300-01;Name=Os01t0618300-01;Locus_id=Os01g0618300;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=AK318608 (DDBJ%2C Best hit);ORF_evidence=B8ABW8 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J100078N21;TENOR=Os01t0618300-01;KEGG=Os01t0618300-01
Chr01	irgsp1_rep	five_prime_UTR	24596218	24596220	.	-	.	Parent=Os01t0618300-01
Chr01	irgsp1_rep	CDS	24595916	24596217	.	-	0	Parent=Os01t0618300-01
Chr01	irgsp1_rep	CDS	24593338	24595480	.	-	1	Parent=Os01t0618300-01
Chr01	irgsp1_rep	CDS	24592708	24593085	.	-	0	Parent=Os01t0618300-01
Chr01	irgsp1_rep	three_prime_UTR	24592460	24592707	.	-	.	Parent=Os01t0618300-01
Chr01	irgsp1_rep	mRNA	24598181	24601809	.	+	.	ID=Os01t0618400-01;Name=Os01t0618400-01;Locus_id=Os01g0618400;Oryzabase Gene Symbol Synonym(s)=OsRH25%2C RH25;Oryzabase Gene Name Synonym(s)=DEAD-box ATP-dependent RNA helicase 25%2C RNA helicase 25;Note=Similar to RNA helicase (Fragment).;Transcript_evidence=AK067570 (DDBJ%2C Best hit);ORF_evidence=Q9FFQ1 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=RNA helicase%2C ATP-dependent%2C DEAD-box%2C conserved site (IPR000629),Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=J013110L15;Oryzabase=11573;Expression=AK067570;TENOR=Os01t0618400-01;KEGG=Os01t0618400-01
Chr01	irgsp1_rep	five_prime_UTR	24598181	24598246	.	+	.	Parent=Os01t0618400-01
Chr01	irgsp1_rep	CDS	24598247	24598626	.	+	0	Parent=Os01t0618400-01
Chr01	irgsp1_rep	CDS	24599096	24599202	.	+	1	Parent=Os01t0618400-01
Chr01	irgsp1_rep	CDS	24599306	24599361	.	+	2	Parent=Os01t0618400-01
Chr01	irgsp1_rep	CDS	24599451	24599675	.	+	0	Parent=Os01t0618400-01
Chr01	irgsp1_rep	CDS	24599760	24599966	.	+	0	Parent=Os01t0618400-01
Chr01	irgsp1_rep	CDS	24600046	24600132	.	+	0	Parent=Os01t0618400-01
Chr01	irgsp1_rep	CDS	24600220	24600315	.	+	0	Parent=Os01t0618400-01
Chr01	irgsp1_rep	CDS	24600389	24600604	.	+	0	Parent=Os01t0618400-01
Chr01	irgsp1_rep	CDS	24600797	24600979	.	+	0	Parent=Os01t0618400-01
Chr01	irgsp1_rep	CDS	24601111	24601338	.	+	0	Parent=Os01t0618400-01
Chr01	irgsp1_rep	three_prime_UTR	24601339	24601809	.	+	.	Parent=Os01t0618400-01
Chr01	irgsp1_rep	mRNA	24600440	24601304	.	-	.	ID=Os01t0618450-00;Name=Os01t0618450-00;Locus_id=Os01g0618450;Note=Non-protein coding transcript.;Transcript_evidence=AF366447 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0618450-00
Chr01	irgsp1_rep	exon	24601120	24601304	.	-	.	Parent=Os01t0618450-00
Chr01	irgsp1_rep	exon	24600791	24600993	.	-	.	Parent=Os01t0618450-00
Chr01	irgsp1_rep	exon	24600440	24600596	.	-	.	Parent=Os01t0618450-00
Chr01	irgsp1_rep	mRNA	24602227	24605484	.	+	.	ID=Os01t0618500-01;Name=Os01t0618500-01;Locus_id=Os01g0618500;Oryzabase Gene Symbol Synonym(s)=OsRH26;Oryzabase Gene Name Synonym(s)=DEAD-box ATP-dependent RNA helicase 26%2C RNA helicase 26;Note=Similar to RNA helicase (Fragment).;Transcript_evidence=AK067476 (DDBJ%2C Best hit);ORF_evidence=B7EDN0 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=RNA helicase%2C ATP-dependent%2C DEAD-box%2C conserved site (IPR000629),Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=J013107O15;Oryzabase=11572;Expression=AK067476;TENOR=Os01t0618500-01;KEGG=Os01t0618500-01
Chr01	irgsp1_rep	five_prime_UTR	24602227	24602314	.	+	.	Parent=Os01t0618500-01
Chr01	irgsp1_rep	CDS	24602315	24602538	.	+	0	Parent=Os01t0618500-01
Chr01	irgsp1_rep	CDS	24603002	24603108	.	+	1	Parent=Os01t0618500-01
Chr01	irgsp1_rep	CDS	24603208	24603263	.	+	2	Parent=Os01t0618500-01
Chr01	irgsp1_rep	CDS	24603358	24603564	.	+	0	Parent=Os01t0618500-01
Chr01	irgsp1_rep	CDS	24603646	24603852	.	+	0	Parent=Os01t0618500-01
Chr01	irgsp1_rep	CDS	24603926	24604012	.	+	0	Parent=Os01t0618500-01
Chr01	irgsp1_rep	CDS	24604098	24604193	.	+	0	Parent=Os01t0618500-01
Chr01	irgsp1_rep	CDS	24604295	24604510	.	+	0	Parent=Os01t0618500-01
Chr01	irgsp1_rep	CDS	24604582	24604764	.	+	0	Parent=Os01t0618500-01
Chr01	irgsp1_rep	CDS	24604903	24605130	.	+	0	Parent=Os01t0618500-01
Chr01	irgsp1_rep	three_prime_UTR	24605131	24605484	.	+	.	Parent=Os01t0618500-01
Chr01	irgsp1_rep	mRNA	24604342	24605096	.	-	.	ID=Os01t0618601-00;Name=Os01t0618601-00;Locus_id=Os01g0618601;Note=Non-protein coding transcript.;Transcript_evidence=AF366447 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0618601-00
Chr01	irgsp1_rep	exon	24604916	24605096	.	-	.	Parent=Os01t0618601-00
Chr01	irgsp1_rep	exon	24604607	24604778	.	-	.	Parent=Os01t0618601-00
Chr01	irgsp1_rep	exon	24604342	24604529	.	-	.	Parent=Os01t0618601-00
Chr01	irgsp1_rep	mRNA	24614231	24615465	.	+	.	ID=Os01t0618700-01;Name=Os01t0618700-01;Locus_id=Os01g0618700;Note=Lipase%2C class 3 family protein.;Transcript_evidence=AK242410 (DDBJ%2C Best hit);ORF_evidence=NP_191727.2 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921);NIAS_FLcDNA=J080075G01;TENOR=Os01t0618700-01;KEGG=Os01t0618700-01
Chr01	irgsp1_rep	five_prime_UTR	24614231	24614232	.	+	.	Parent=Os01t0618700-01
Chr01	irgsp1_rep	CDS	24614233	24614586	.	+	0	Parent=Os01t0618700-01
Chr01	irgsp1_rep	CDS	24614693	24615133	.	+	0	Parent=Os01t0618700-01
Chr01	irgsp1_rep	three_prime_UTR	24615134	24615465	.	+	.	Parent=Os01t0618700-01
Chr01	irgsp1_rep	mRNA	24616103	24618581	.	-	.	ID=Os01t0618800-01;Name=Os01t0618800-01;Locus_id=Os01g0618800;CGSNL Gene Symbol=FTSH9;Oryzabase Gene Symbol Synonym(s)=OsFtsH9%2C FtsH9;Note=Similar to ATP-dependent zinc metalloprotease FTSH 9%2C chloroplastic/mitochondrial.;Transcript_evidence=AK068431 (DDBJ%2C Best hit);ORF_evidence=A2ZVG7 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: ATP binding (GO:0005524);InterPro=Peptidase M41 (IPR000642),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);NIAS_FLcDNA=J013154E14;Oryzabase=21261;TENOR=Os01t0618800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	24618580	24618581	.	-	.	Parent=Os01t0618800-01
Chr01	irgsp1_rep	CDS	24618499	24618579	.	-	0	Parent=Os01t0618800-01
Chr01	irgsp1_rep	CDS	24618268	24618397	.	-	0	Parent=Os01t0618800-01
Chr01	irgsp1_rep	CDS	24617860	24618008	.	-	2	Parent=Os01t0618800-01
Chr01	irgsp1_rep	CDS	24617388	24617669	.	-	0	Parent=Os01t0618800-01
Chr01	irgsp1_rep	CDS	24617229	24617318	.	-	0	Parent=Os01t0618800-01
Chr01	irgsp1_rep	CDS	24616874	24616927	.	-	0	Parent=Os01t0618800-01
Chr01	irgsp1_rep	CDS	24616601	24616741	.	-	0	Parent=Os01t0618800-01
Chr01	irgsp1_rep	three_prime_UTR	24616103	24616600	.	-	.	Parent=Os01t0618800-01
Chr01	irgsp1_rep	mRNA	24616208	24618543	.	-	.	ID=Os01t0618800-02;Name=Os01t0618800-02;Locus_id=Os01g0618800;CGSNL Gene Symbol=FTSH9;Oryzabase Gene Symbol Synonym(s)=OsFtsH9%2C FtsH9;Note=Similar to Cell division protease ftsH homolog 9%2C chloroplastic/mitochondrial.;Transcript_evidence=AK060394 (DDBJ%2C Best hit);ORF_evidence=A2ZVG7 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: ATP binding (GO:0005524);InterPro=Peptidase M41 (IPR000642);NIAS_FLcDNA=001-010-A12;Oryzabase=21261;Expression=AK060394;TENOR=Os01t0618800-02;KEGG=Os01t0618800-02 (EC:3.4.24.-)
Chr01	irgsp1_rep	CDS	24618499	24618543	.	-	0	Parent=Os01t0618800-02
Chr01	irgsp1_rep	CDS	24618268	24618397	.	-	0	Parent=Os01t0618800-02
Chr01	irgsp1_rep	CDS	24617860	24618008	.	-	2	Parent=Os01t0618800-02
Chr01	irgsp1_rep	CDS	24617388	24617669	.	-	0	Parent=Os01t0618800-02
Chr01	irgsp1_rep	CDS	24617229	24617318	.	-	0	Parent=Os01t0618800-02
Chr01	irgsp1_rep	CDS	24616874	24616927	.	-	0	Parent=Os01t0618800-02
Chr01	irgsp1_rep	CDS	24616601	24616741	.	-	0	Parent=Os01t0618800-02
Chr01	irgsp1_rep	three_prime_UTR	24616208	24616600	.	-	.	Parent=Os01t0618800-02
Chr01	irgsp1_rep	mRNA	24630323	24632326	.	+	.	ID=Os01t0618900-01;Name=Os01t0618900-01;Locus_id=Os01g0618900;Oryzabase Gene Symbol Synonym(s)=OsPGL31%2C PGL31;Oryzabase Gene Name Synonym(s)=Polygalacturonases-Like 31%2C PG-like 31;Note=Similar to Polygalacturonase.;Transcript_evidence=AK058453 (DDBJ%2C Best hit);ORF_evidence=B6TDS0 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=001-015-H05;Oryzabase=22308;TENOR=Os01t0618900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	24630323	24630431	.	+	0	Parent=Os01t0618900-01
Chr01	irgsp1_rep	CDS	24630595	24630769	.	+	2	Parent=Os01t0618900-01
Chr01	irgsp1_rep	CDS	24631342	24631412	.	+	1	Parent=Os01t0618900-01
Chr01	irgsp1_rep	CDS	24631531	24632165	.	+	2	Parent=Os01t0618900-01
Chr01	irgsp1_rep	three_prime_UTR	24632166	24632326	.	+	.	Parent=Os01t0618900-01
Chr01	irgsp1_rep	mRNA	24630689	24632327	.	+	.	ID=Os01t0618900-02;Name=Os01t0618900-02;Locus_id=Os01g0618900;Oryzabase Gene Symbol Synonym(s)=OsPGL31%2C PGL31;Oryzabase Gene Name Synonym(s)=Polygalacturonases-Like 31%2C PG-like 31;Note=Similar to polygalacturonase.;Transcript_evidence=AK099329 (DDBJ%2C Best hit);ORF_evidence=B6TDS0 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=J033013K19;Oryzabase=22308;Expression=AK099329;TENOR=Os01t0618900-02;KEGG=Os01t0618900-02
Chr01	irgsp1_rep	five_prime_UTR	24630689	24630689	.	+	.	Parent=Os01t0618900-02
Chr01	irgsp1_rep	CDS	24630690	24630769	.	+	0	Parent=Os01t0618900-02
Chr01	irgsp1_rep	CDS	24631342	24631412	.	+	1	Parent=Os01t0618900-02
Chr01	irgsp1_rep	CDS	24631531	24632165	.	+	2	Parent=Os01t0618900-02
Chr01	irgsp1_rep	three_prime_UTR	24632166	24632327	.	+	.	Parent=Os01t0618900-02
Chr01	irgsp1_rep	mRNA	24633765	24639276	.	-	.	ID=Os01t0619000-01;Name=Os01t0619000-01;Locus_id=Os01g0619000;Note=RNA recognition motif domain domain containing protein.;Transcript_evidence=AK068707 (DDBJ%2C Best hit);ORF_evidence=Q5ZBG2 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013159M21;TENOR=Os01t0619000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	24639082	24639276	.	-	.	Parent=Os01t0619000-01
Chr01	irgsp1_rep	five_prime_UTR	24638938	24638984	.	-	.	Parent=Os01t0619000-01
Chr01	irgsp1_rep	CDS	24638758	24638937	.	-	0	Parent=Os01t0619000-01
Chr01	irgsp1_rep	CDS	24638000	24638209	.	-	0	Parent=Os01t0619000-01
Chr01	irgsp1_rep	CDS	24637807	24637864	.	-	0	Parent=Os01t0619000-01
Chr01	irgsp1_rep	CDS	24635914	24635957	.	-	2	Parent=Os01t0619000-01
Chr01	irgsp1_rep	three_prime_UTR	24635895	24635913	.	-	.	Parent=Os01t0619000-01
Chr01	irgsp1_rep	three_prime_UTR	24635724	24635797	.	-	.	Parent=Os01t0619000-01
Chr01	irgsp1_rep	three_prime_UTR	24635550	24635645	.	-	.	Parent=Os01t0619000-01
Chr01	irgsp1_rep	three_prime_UTR	24635301	24635358	.	-	.	Parent=Os01t0619000-01
Chr01	irgsp1_rep	three_prime_UTR	24635137	24635226	.	-	.	Parent=Os01t0619000-01
Chr01	irgsp1_rep	three_prime_UTR	24634977	24635058	.	-	.	Parent=Os01t0619000-01
Chr01	irgsp1_rep	three_prime_UTR	24634788	24634900	.	-	.	Parent=Os01t0619000-01
Chr01	irgsp1_rep	three_prime_UTR	24633765	24634667	.	-	.	Parent=Os01t0619000-01
Chr01	irgsp1_rep	mRNA	24633776	24639213	.	-	.	ID=Os01t0619000-02;Name=Os01t0619000-02;Locus_id=Os01g0619000;Note=Similar to predicted protein.;Transcript_evidence=AK104869 (DDBJ%2C Best hit);ORF_evidence=A2WSP5 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-044-B01;Expression=AK104869;TENOR=Os01t0619000-02;KEGG=Os01t0619000-02
Chr01	irgsp1_rep	five_prime_UTR	24639082	24639213	.	-	.	Parent=Os01t0619000-02
Chr01	irgsp1_rep	five_prime_UTR	24638938	24638984	.	-	.	Parent=Os01t0619000-02
Chr01	irgsp1_rep	CDS	24638758	24638937	.	-	0	Parent=Os01t0619000-02
Chr01	irgsp1_rep	CDS	24638000	24638209	.	-	0	Parent=Os01t0619000-02
Chr01	irgsp1_rep	CDS	24635895	24635957	.	-	0	Parent=Os01t0619000-02
Chr01	irgsp1_rep	CDS	24635724	24635797	.	-	0	Parent=Os01t0619000-02
Chr01	irgsp1_rep	CDS	24635550	24635645	.	-	1	Parent=Os01t0619000-02
Chr01	irgsp1_rep	CDS	24635301	24635358	.	-	1	Parent=Os01t0619000-02
Chr01	irgsp1_rep	CDS	24635137	24635226	.	-	0	Parent=Os01t0619000-02
Chr01	irgsp1_rep	CDS	24634977	24635058	.	-	0	Parent=Os01t0619000-02
Chr01	irgsp1_rep	CDS	24634788	24634900	.	-	2	Parent=Os01t0619000-02
Chr01	irgsp1_rep	CDS	24633969	24634667	.	-	0	Parent=Os01t0619000-02
Chr01	irgsp1_rep	three_prime_UTR	24633776	24633968	.	-	.	Parent=Os01t0619000-02
Chr01	irgsp1_rep	mRNA	24643224	24644218	.	-	.	ID=Os01t0619100-01;Name=Os01t0619100-01;Locus_id=Os01g0619100;RAP-DB Gene Symbol Synonym(s)=OsTCL1;RAP-DB Gene Name Synonym(s)=TRICHOMELESS1;CGSNL Gene Symbol=TCL1;CGSNL Gene Name=TRICHOMELESS 1;Oryzabase Gene Symbol Synonym(s)=OsTCL1;Oryzabase Gene Name Synonym(s)=TRICHOMELESS1;Note=R3 MYB transcription factor;Transcript_evidence=Inferred from literature;ORF_evidence=B9EY37;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeobox-like domain superfamily (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930);Manual Curation=July 19%2C 2018;Literature_PMID=26758286;Oryzabase=20918;Subcellular location=nucleus (GO:0005634), plasma membrane (GO:0005886)
Chr01	irgsp1_rep	CDS	24644152	24644218	.	-	0	Parent=Os01t0619100-01
Chr01	irgsp1_rep	CDS	24643494	24643581	.	-	2	Parent=Os01t0619100-01
Chr01	irgsp1_rep	CDS	24643224	24643308	.	-	1	Parent=Os01t0619100-01
Chr01	irgsp1_rep	mRNA	24691392	24696311	.	+	.	ID=Os01t0619800-01;Name=Os01t0619800-01;Locus_id=Os01g0619800;Note=Similar to Hydrolase%2C hydrolyzing O-glycosyl compounds.;Transcript_evidence=AK106731 (DDBJ%2C Best hit);ORF_evidence=B6TAN9 (UniProt);InterPro=Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=002-114-H10;TENOR=Os01t0619800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	24691392	24691434	.	+	.	Parent=Os01t0619800-01
Chr01	irgsp1_rep	CDS	24691435	24691713	.	+	0	Parent=Os01t0619800-01
Chr01	irgsp1_rep	CDS	24691824	24691897	.	+	0	Parent=Os01t0619800-01
Chr01	irgsp1_rep	CDS	24692993	24693073	.	+	1	Parent=Os01t0619800-01
Chr01	irgsp1_rep	CDS	24693145	24693226	.	+	1	Parent=Os01t0619800-01
Chr01	irgsp1_rep	CDS	24693485	24693586	.	+	0	Parent=Os01t0619800-01
Chr01	irgsp1_rep	three_prime_UTR	24693587	24693749	.	+	.	Parent=Os01t0619800-01
Chr01	irgsp1_rep	three_prime_UTR	24695148	24695502	.	+	.	Parent=Os01t0619800-01
Chr01	irgsp1_rep	three_prime_UTR	24695812	24696311	.	+	.	Parent=Os01t0619800-01
Chr01	irgsp1_rep	mRNA	24696532	24697792	.	-	.	ID=Os01t0619900-01;Name=Os01t0619900-01;Locus_id=Os01g0619900;CGSNL Gene Symbol=TCL2;CGSNL Gene Name=TRICHOMELESS 2;Oryzabase Gene Symbol Synonym(s)=OsTCL2;Oryzabase Gene Name Synonym(s)=TRICHOMELESS2;Note=Similar to DNA binding.;Transcript_evidence=AK060239 (DDBJ%2C Best hit);ORF_evidence=NP_001118417.1 (RefSeq);NIAS_FLcDNA=001-003-D06;Oryzabase=20919;Expression=AK060239;TENOR=Os01t0619900-01;KEGG=Os01t0619900-01
Chr01	irgsp1_rep	five_prime_UTR	24697100	24697792	.	-	.	Parent=Os01t0619900-01
Chr01	irgsp1_rep	CDS	24696956	24697099	.	-	0	Parent=Os01t0619900-01
Chr01	irgsp1_rep	three_prime_UTR	24696532	24696955	.	-	.	Parent=Os01t0619900-01
Chr01	irgsp1_rep	mRNA	24703771	24708911	.	-	.	ID=Os01t0620100-01;Name=Os01t0620100-01;Locus_id=Os01g0620100;Oryzabase Gene Symbol Synonym(s)=OsWD40-19%2C WD40-19;Note=WD40 domain containing protein%2C Cold tolerance;Transcript_evidence=AK070122;ORF_evidence=Q5ZBF5;GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40/YVTN repeat-like-containing domain superfamily (IPR015943),WD40-repeat-containing domain superfamily (IPR036322),WD40-repeat-containing domain (IPR017986),WD40 repeat (IPR001680);NIAS_FLcDNA=J023044A10;Manual Curation=November 1%2C 2018;Literature_PMID=30013584;Oryzabase=10700;Expression=AK070122;TENOR=Os01t0620100-01;KEGG=Os01t0620100-01
Chr01	irgsp1_rep	five_prime_UTR	24708782	24708911	.	-	.	Parent=Os01t0620100-01
Chr01	irgsp1_rep	CDS	24708632	24708781	.	-	0	Parent=Os01t0620100-01
Chr01	irgsp1_rep	CDS	24707981	24708092	.	-	0	Parent=Os01t0620100-01
Chr01	irgsp1_rep	CDS	24706858	24706958	.	-	2	Parent=Os01t0620100-01
Chr01	irgsp1_rep	CDS	24706328	24706405	.	-	0	Parent=Os01t0620100-01
Chr01	irgsp1_rep	CDS	24706005	24706160	.	-	0	Parent=Os01t0620100-01
Chr01	irgsp1_rep	CDS	24705134	24705246	.	-	0	Parent=Os01t0620100-01
Chr01	irgsp1_rep	CDS	24704243	24704369	.	-	1	Parent=Os01t0620100-01
Chr01	irgsp1_rep	CDS	24703925	24704062	.	-	0	Parent=Os01t0620100-01
Chr01	irgsp1_rep	three_prime_UTR	24703771	24703924	.	-	.	Parent=Os01t0620100-01
Chr01	irgsp1_rep	mRNA	24712185	24713658	.	+	.	ID=Os01t0620301-00;Name=Os01t0620301-00;Locus_id=Os01g0620301;Note=Hypothetical protein.;Transcript_evidence=tplb0025d08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0620301-00
Chr01	irgsp1_rep	five_prime_UTR	24712185	24713208	.	+	.	Parent=Os01t0620301-00
Chr01	irgsp1_rep	CDS	24713209	24713646	.	+	0	Parent=Os01t0620301-00
Chr01	irgsp1_rep	three_prime_UTR	24713647	24713658	.	+	.	Parent=Os01t0620301-00
Chr01	irgsp1_rep	mRNA	24714259	24714801	.	+	.	ID=Os01t0620400-01;Name=Os01t0620400-01;Locus_id=Os01g0620400;Note=Hypothetical protein.;Transcript_evidence=AK062829 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-107-G04;Expression=AK062829;TENOR=Os01t0620400-01;KEGG=Os01t0620400-01
Chr01	irgsp1_rep	five_prime_UTR	24714259	24714494	.	+	.	Parent=Os01t0620400-01
Chr01	irgsp1_rep	CDS	24714495	24714755	.	+	0	Parent=Os01t0620400-01
Chr01	irgsp1_rep	three_prime_UTR	24714756	24714801	.	+	.	Parent=Os01t0620400-01
Chr01	irgsp1_rep	mRNA	24739092	24740986	.	+	.	ID=Os01t0620800-01;Name=Os01t0620800-01;Locus_id=Os01g0620800;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK108846 (DDBJ%2C Best hit);ORF_evidence=A2WSQ5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=002-152-A02;Expression=AK108846;TENOR=Os01t0620800-01;KEGG=Os01t0620800-01 (EC:2.4.1.218)
Chr01	irgsp1_rep	five_prime_UTR	24739092	24739155	.	+	.	Parent=Os01t0620800-01
Chr01	irgsp1_rep	CDS	24739156	24740679	.	+	0	Parent=Os01t0620800-01
Chr01	irgsp1_rep	three_prime_UTR	24740680	24740986	.	+	.	Parent=Os01t0620800-01
Chr01	irgsp1_rep	mRNA	24741594	24742209	.	-	.	ID=Os01t0620900-01;Name=Os01t0620900-01;Locus_id=Os01g0620900;Note=Conserved hypothetical protein.;Transcript_evidence=AK100581 (DDBJ%2C Best hit);ORF_evidence=B8B3N4 (UniProt);NIAS_FLcDNA=J023105O07;TENOR=Os01t0620900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	24742135	24742209	.	-	.	Parent=Os01t0620900-01
Chr01	irgsp1_rep	CDS	24741925	24742134	.	-	0	Parent=Os01t0620900-01
Chr01	irgsp1_rep	three_prime_UTR	24741594	24741924	.	-	.	Parent=Os01t0620900-01
Chr01	irgsp1_rep	mRNA	24753864	24758578	.	-	.	ID=Os01t0621200-00;Name=Os01t0621200-00;Locus_id=Os01g0621200;Oryzabase Gene Symbol Synonym(s)=OsGAT2;Oryzabase Gene Name Synonym(s)=gamma-aminobutyric acid transporter 2;Note=Similar to proline transporter.;Transcript_evidence=ab initio prediction;ORF_evidence=XP_002303637.1 (RefSeq);InterPro=Amino acid transporter%2C transmembrane (IPR013057);Oryzabase=18510;TENOR=Os01t0621200-00;KEGG=Os01t0621200-00
Chr01	irgsp1_rep	CDS	24758155	24758578	.	-	0	Parent=Os01t0621200-00
Chr01	irgsp1_rep	CDS	24757690	24757787	.	-	2	Parent=Os01t0621200-00
Chr01	irgsp1_rep	CDS	24756039	24756225	.	-	0	Parent=Os01t0621200-00
Chr01	irgsp1_rep	CDS	24755300	24755430	.	-	2	Parent=Os01t0621200-00
Chr01	irgsp1_rep	CDS	24753864	24754529	.	-	0	Parent=Os01t0621200-00
Chr01	irgsp1_rep	mRNA	24763107	24768254	.	-	.	ID=Os01t0621300-01;Name=Os01t0621300-01;Locus_id=Os01g0621300;Note=Hypothetical conserved gene.;Transcript_evidence=AK242278 (DDBJ%2C Best hit);ORF_evidence=B9EY43 (UniProt);InterPro=Protein of unknown function DUF3133 (IPR021480);NIAS_FLcDNA=J075187M23;TENOR=Os01t0621300-01;KEGG=Os01t0621300-01
Chr01	irgsp1_rep	five_prime_UTR	24768089	24768254	.	-	.	Parent=Os01t0621300-01
Chr01	irgsp1_rep	five_prime_UTR	24767882	24767954	.	-	.	Parent=Os01t0621300-01
Chr01	irgsp1_rep	CDS	24765798	24767881	.	-	0	Parent=Os01t0621300-01
Chr01	irgsp1_rep	CDS	24765077	24765137	.	-	1	Parent=Os01t0621300-01
Chr01	irgsp1_rep	CDS	24764774	24764997	.	-	0	Parent=Os01t0621300-01
Chr01	irgsp1_rep	CDS	24763533	24763587	.	-	1	Parent=Os01t0621300-01
Chr01	irgsp1_rep	three_prime_UTR	24763107	24763532	.	-	.	Parent=Os01t0621300-01
Chr01	irgsp1_rep	mRNA	24767474	24769263	.	+	.	ID=Os01t0621400-01;Name=Os01t0621400-01;Locus_id=Os01g0621400;Note=Hypothetical protein.;Transcript_evidence=AK106945 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-119-D10;Expression=AK106945;TENOR=Os01t0621400-01;KEGG=Os01t0621400-01
Chr01	irgsp1_rep	five_prime_UTR	24767474	24768027	.	+	.	Parent=Os01t0621400-01
Chr01	irgsp1_rep	CDS	24768028	24768318	.	+	0	Parent=Os01t0621400-01
Chr01	irgsp1_rep	three_prime_UTR	24768319	24769263	.	+	.	Parent=Os01t0621400-01
Chr01	irgsp1_rep	mRNA	24774161	24774574	.	+	.	ID=Os01t0621500-00;Name=Os01t0621500-00;Locus_id=Os01g0621500;Note=Conserved hypothetical protein.;Transcript_evidence=EU976892 (DDBJ);ORF_evidence=B8ABX9 (UniProt);TENOR=Os01t0621500-00
Chr01	irgsp1_rep	CDS	24774161	24774574	.	+	0	Parent=Os01t0621500-00
Chr01	irgsp1_rep	mRNA	24784609	24788153	.	-	.	ID=Os01t0621600-01;Name=Os01t0621600-01;Locus_id=Os01g0621600;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK100122 (DDBJ%2C Best hit);ORF_evidence=A2WSR0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Domain of unknown function DUF1221 (IPR010632),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J023007L07;Expression=AK100122;TENOR=Os01t0621600-01;KEGG=Os01t0621600-01
Chr01	irgsp1_rep	five_prime_UTR	24787929	24788153	.	-	.	Parent=Os01t0621600-01
Chr01	irgsp1_rep	five_prime_UTR	24787343	24787457	.	-	.	Parent=Os01t0621600-01
Chr01	irgsp1_rep	CDS	24785404	24787342	.	-	0	Parent=Os01t0621600-01
Chr01	irgsp1_rep	CDS	24784841	24784989	.	-	2	Parent=Os01t0621600-01
Chr01	irgsp1_rep	three_prime_UTR	24784609	24784840	.	-	.	Parent=Os01t0621600-01
Chr01	irgsp1_rep	mRNA	24792133	24794372	.	+	.	ID=Os01t0621700-01;Name=Os01t0621700-01;Locus_id=Os01g0621700;Note=Myosin tail 2 domain containing protein.;Transcript_evidence=AK108938 (DDBJ%2C Best hit);ORF_evidence=NP_568789.1 (RefSeq);GO=Cellular Component: myosin complex (GO:0016459),Molecular Function: motor activity (GO:0003774);InterPro=Myosin tail 2 (IPR010926);NIAS_FLcDNA=002-153-B04;Expression=AK108938;TENOR=Os01t0621700-01;KEGG=Os01t0621700-01
Chr01	irgsp1_rep	five_prime_UTR	24792133	24792166	.	+	.	Parent=Os01t0621700-01
Chr01	irgsp1_rep	CDS	24792167	24792410	.	+	0	Parent=Os01t0621700-01
Chr01	irgsp1_rep	CDS	24793081	24793399	.	+	2	Parent=Os01t0621700-01
Chr01	irgsp1_rep	CDS	24793777	24793835	.	+	1	Parent=Os01t0621700-01
Chr01	irgsp1_rep	CDS	24794124	24794170	.	+	2	Parent=Os01t0621700-01
Chr01	irgsp1_rep	three_prime_UTR	24794171	24794372	.	+	.	Parent=Os01t0621700-01
Chr01	irgsp1_rep	mRNA	24808516	24813386	.	+	.	ID=Os01t0621900-01;Name=Os01t0621900-01;Locus_id=Os01g0621900;CGSNL Gene Symbol=ILA1;CGSNL Gene Name=ILA1 INTERACTING PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=IIP1;Oryzabase Gene Name Synonym(s)=ILA1 interacting protein 1;Note=Similar to OSIGBa0097P08.1 protein.;Transcript_evidence=AK101393 (DDBJ%2C Best hit);ORF_evidence=Q01JK4 (UniProt);NIAS_FLcDNA=J033036N15;Oryzabase=10222;Expression=AK101393;TENOR=Os01t0621900-01;KEGG=Os01t0621900-01
Chr01	irgsp1_rep	five_prime_UTR	24808516	24808785	.	+	.	Parent=Os01t0621900-01
Chr01	irgsp1_rep	five_prime_UTR	24809940	24810016	.	+	.	Parent=Os01t0621900-01
Chr01	irgsp1_rep	five_prime_UTR	24810798	24811069	.	+	.	Parent=Os01t0621900-01
Chr01	irgsp1_rep	CDS	24811070	24813010	.	+	0	Parent=Os01t0621900-01
Chr01	irgsp1_rep	three_prime_UTR	24813011	24813386	.	+	.	Parent=Os01t0621900-01
Chr01	irgsp1_rep	mRNA	24808579	24813305	.	+	.	ID=Os01t0621900-02;Name=Os01t0621900-02;Locus_id=Os01g0621900;CGSNL Gene Symbol=ILA1;CGSNL Gene Name=ILA1 INTERACTING PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=IIP1;Oryzabase Gene Name Synonym(s)=ILA1 interacting protein 1;Note=Similar to OSIGBa0097P08.1 protein.;Transcript_evidence=AK103381 (DDBJ%2C Best hit),AK101548 (DDBJ%2C Best hit);ORF_evidence=Q01JK4 (UniProt);NIAS_FLcDNA=J033127E22,J033048O05;Oryzabase=10222;Expression=AK103381;TENOR=Os01t0621900-02;KEGG=Os01t0621900-02
Chr01	irgsp1_rep	five_prime_UTR	24808579	24808785	.	+	.	Parent=Os01t0621900-02
Chr01	irgsp1_rep	five_prime_UTR	24809940	24810016	.	+	.	Parent=Os01t0621900-02
Chr01	irgsp1_rep	five_prime_UTR	24810798	24811069	.	+	.	Parent=Os01t0621900-02
Chr01	irgsp1_rep	CDS	24811070	24813010	.	+	0	Parent=Os01t0621900-02
Chr01	irgsp1_rep	three_prime_UTR	24813011	24813305	.	+	.	Parent=Os01t0621900-02
Chr01	irgsp1_rep	mRNA	24808696	24813319	.	+	.	ID=Os01t0621900-03;Name=Os01t0621900-03;Locus_id=Os01g0621900;CGSNL Gene Symbol=ILA1;CGSNL Gene Name=ILA1 INTERACTING PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=IIP1;Oryzabase Gene Name Synonym(s)=ILA1 interacting protein 1;Note=Similar to OSIGBa0097P08.1 protein.;Transcript_evidence=AK099577 (DDBJ%2C Best hit);ORF_evidence=Q01JK4 (UniProt);NIAS_FLcDNA=J013038F15;Oryzabase=10222;Expression=AK099577;TENOR=Os01t0621900-03;KEGG=Os01t0621900-03
Chr01	irgsp1_rep	five_prime_UTR	24808696	24808785	.	+	.	Parent=Os01t0621900-03
Chr01	irgsp1_rep	five_prime_UTR	24809940	24810016	.	+	.	Parent=Os01t0621900-03
Chr01	irgsp1_rep	five_prime_UTR	24810798	24811069	.	+	.	Parent=Os01t0621900-03
Chr01	irgsp1_rep	CDS	24811070	24813010	.	+	0	Parent=Os01t0621900-03
Chr01	irgsp1_rep	three_prime_UTR	24813011	24813319	.	+	.	Parent=Os01t0621900-03
Chr01	irgsp1_rep	mRNA	24811978	24813334	.	+	.	ID=Os01t0621900-04;Name=Os01t0621900-04;Locus_id=Os01g0621900;CGSNL Gene Symbol=ILA1;CGSNL Gene Name=ILA1 INTERACTING PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=IIP1;Oryzabase Gene Name Synonym(s)=ILA1 interacting protein 1;Note=Hypothetical conserved gene.;Transcript_evidence=AK062141 (DDBJ%2C Best hit);ORF_evidence=A2WSR2 (UniProt);NIAS_FLcDNA=001-045-G04;Oryzabase=10222;Expression=AK062141;TENOR=Os01t0621900-04;KEGG=Os01t0621900-04
Chr01	irgsp1_rep	five_prime_UTR	24811978	24811978	.	+	.	Parent=Os01t0621900-04
Chr01	irgsp1_rep	CDS	24811979	24813010	.	+	0	Parent=Os01t0621900-04
Chr01	irgsp1_rep	three_prime_UTR	24813011	24813334	.	+	.	Parent=Os01t0621900-04
Chr01	irgsp1_rep	mRNA	24813615	24814292	.	-	.	ID=Os01t0622000-00;Name=Os01t0622000-00;Locus_id=Os01g0622000;Note=Similar to predicted protein.;Transcript_evidence=BT017340 (DDBJ);ORF_evidence=B8ABY0 (UniProt);Oryzabase=15233;TENOR=Os01t0622000-00;KEGG=Os01t0622000-00
Chr01	irgsp1_rep	CDS	24813840	24814292	.	-	0	Parent=Os01t0622000-00
Chr01	irgsp1_rep	three_prime_UTR	24813615	24813839	.	-	.	Parent=Os01t0622000-00
Chr01	irgsp1_rep	mRNA	24813640	24818485	.	+	.	ID=Os01t0622033-01;Name=Os01t0622033-01;Locus_id=Os01g0622033;Note=Hypothetical gene.;Transcript_evidence=AK242680 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090032J24;TENOR=Os01t0622033-01;KEGG=Os01t0622033-01
Chr01	irgsp1_rep	five_prime_UTR	24813640	24814283	.	+	.	Parent=Os01t0622033-01
Chr01	irgsp1_rep	five_prime_UTR	24814511	24814589	.	+	.	Parent=Os01t0622033-01
Chr01	irgsp1_rep	five_prime_UTR	24815540	24815698	.	+	.	Parent=Os01t0622033-01
Chr01	irgsp1_rep	five_prime_UTR	24815972	24816135	.	+	.	Parent=Os01t0622033-01
Chr01	irgsp1_rep	five_prime_UTR	24816325	24816513	.	+	.	Parent=Os01t0622033-01
Chr01	irgsp1_rep	five_prime_UTR	24817040	24817249	.	+	.	Parent=Os01t0622033-01
Chr01	irgsp1_rep	five_prime_UTR	24817352	24817676	.	+	.	Parent=Os01t0622033-01
Chr01	irgsp1_rep	CDS	24817677	24817840	.	+	0	Parent=Os01t0622033-01
Chr01	irgsp1_rep	CDS	24817951	24818151	.	+	1	Parent=Os01t0622033-01
Chr01	irgsp1_rep	CDS	24818257	24818416	.	+	1	Parent=Os01t0622033-01
Chr01	irgsp1_rep	three_prime_UTR	24818417	24818485	.	+	.	Parent=Os01t0622033-01
Chr01	irgsp1_rep	mRNA	24819659	24820517	.	-	.	ID=Os01t0622066-00;Name=Os01t0622066-00;Locus_id=Os01g0622066;Note=Conserved hypothetical protein.;Transcript_evidence=EU974827 (DDBJ);ORF_evidence=B8ABY0 (UniProt);TENOR=Os01t0622066-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	24820397	24820517	.	-	.	Parent=Os01t0622066-00
Chr01	irgsp1_rep	CDS	24819902	24820396	.	-	0	Parent=Os01t0622066-00
Chr01	irgsp1_rep	CDS	24819659	24819787	.	-	0	Parent=Os01t0622066-00
Chr01	irgsp1_rep	mRNA	24819706	24820360	.	+	.	ID=Os01t0622100-00;Name=Os01t0622100-00;Locus_id=Os01g0622100;Note=Conserved hypothetical protein.;Transcript_evidence=BT086950 (DDBJ);ORF_evidence=NP_001183531.1 (RefSeq);TENOR=Os01t0622100-00
Chr01	irgsp1_rep	five_prime_UTR	24819706	24819784	.	+	.	Parent=Os01t0622100-00
Chr01	irgsp1_rep	five_prime_UTR	24819899	24819902	.	+	.	Parent=Os01t0622100-00
Chr01	irgsp1_rep	CDS	24819903	24820220	.	+	0	Parent=Os01t0622100-00
Chr01	irgsp1_rep	three_prime_UTR	24820221	24820360	.	+	.	Parent=Os01t0622100-00
Chr01	irgsp1_rep	mRNA	24823998	24828139	.	-	.	ID=Os01t0622300-01;Name=Os01t0622300-01;Locus_id=Os01g0622300;Oryzabase Gene Symbol Synonym(s)=HEME;Oryzabase Gene Name Synonym(s)=uroporphyrinogen decarboxylase;Note=Similar to Plastid uroporphyrinogen decarboxylase (Fragment).;Transcript_evidence=AK106203 (DDBJ%2C Best hit),AK072290 (DDBJ%2C Best hit),AK099135 (DDBJ%2C Best hit);ORF_evidence=B8ABY1 (UniProt);NIAS_FLcDNA=001-208-F10,J023018J01,J023047E18;Oryzabase=22138;TENOR=Os01t0622300-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	24828078	24828139	.	-	.	Parent=Os01t0622300-01
Chr01	irgsp1_rep	CDS	24827948	24828077	.	-	0	Parent=Os01t0622300-01
Chr01	irgsp1_rep	CDS	24827460	24827848	.	-	2	Parent=Os01t0622300-01
Chr01	irgsp1_rep	CDS	24826165	24826449	.	-	0	Parent=Os01t0622300-01
Chr01	irgsp1_rep	CDS	24825365	24825600	.	-	0	Parent=Os01t0622300-01
Chr01	irgsp1_rep	CDS	24824268	24824436	.	-	1	Parent=Os01t0622300-01
Chr01	irgsp1_rep	three_prime_UTR	24823998	24824267	.	-	.	Parent=Os01t0622300-01
Chr01	irgsp1_rep	mRNA	24833813	24834217	.	-	.	ID=Os01t0622400-00;Name=Os01t0622400-00;Locus_id=Os01g0622400;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9EY45 (UniProt);TENOR=Os01t0622400-00;KEGG=Os01t0622400-00
Chr01	irgsp1_rep	CDS	24833813	24834217	.	-	0	Parent=Os01t0622400-00
Chr01	irgsp1_rep	mRNA	24833455	24838546	.	+	.	ID=Os01t0622500-01;Name=Os01t0622500-01;Locus_id=Os01g0622500;Note=Hypothetical gene.;Transcript_evidence=AK103435 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033129B05;Expression=AK103435;TENOR=Os01t0622500-01;KEGG=Os01t0622500-01
Chr01	irgsp1_rep	five_prime_UTR	24833455	24833682	.	+	.	Parent=Os01t0622500-01
Chr01	irgsp1_rep	CDS	24833683	24833898	.	+	0	Parent=Os01t0622500-01
Chr01	irgsp1_rep	three_prime_UTR	24833899	24834277	.	+	.	Parent=Os01t0622500-01
Chr01	irgsp1_rep	three_prime_UTR	24834543	24838546	.	+	.	Parent=Os01t0622500-01
Chr01	irgsp1_rep	mRNA	24839124	24843459	.	+	.	ID=Os01t0622600-01;Name=Os01t0622600-01;Locus_id=Os01g0622600;RAP-DB Gene Symbol Synonym(s)=OsCDPK1;RAP-DB Gene Name Synonym(s)=calcium-dependent protein kinase 1;CGSNL Gene Symbol=CDPK1;CGSNL Gene Name=CALCIUM-DEPENDENT PROTEIN KINASE 1;Oryzabase Gene Symbol Synonym(s)=OsCDPK1%2C OsCPK1%2C CPK1;Oryzabase Gene Name Synonym(s)=calcium-dependent protein kinase;Note=Calcium-dependent protein kinase%2C Positive regulation of salt and drought tolerance%2C Negative regulation of seedling growth and seed development%2C Regulation of pathogenesis-related genes involved in disease resistance;Transcript_evidence=AK243656;ORF_evidence=A2ZVI7;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),EF-hand domain pair (IPR011992),Protein kinase domain (IPR000719),EF-hand domain (IPR002048),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271),EF-Hand 1%2C calcium-binding site (IPR018247);NIAS_FLcDNA=J100088L22;Manual Curation=March 5%2C 2018;Literature_PMID=29321675,15695435;Oryzabase=8055;TENOR=Os01t0622600-01;KEGG=Os01t0622600-01 (EC:2.7.11.1)
Chr01	irgsp1_rep	five_prime_UTR	24839124	24839237	.	+	.	Parent=Os01t0622600-01
Chr01	irgsp1_rep	CDS	24839238	24839898	.	+	0	Parent=Os01t0622600-01
Chr01	irgsp1_rep	CDS	24840814	24840957	.	+	2	Parent=Os01t0622600-01
Chr01	irgsp1_rep	CDS	24841043	24841195	.	+	2	Parent=Os01t0622600-01
Chr01	irgsp1_rep	CDS	24841516	24841631	.	+	2	Parent=Os01t0622600-01
Chr01	irgsp1_rep	CDS	24841715	24841882	.	+	0	Parent=Os01t0622600-01
Chr01	irgsp1_rep	CDS	24842499	24842626	.	+	0	Parent=Os01t0622600-01
Chr01	irgsp1_rep	CDS	24842716	24842815	.	+	1	Parent=Os01t0622600-01
Chr01	irgsp1_rep	CDS	24843008	24843094	.	+	0	Parent=Os01t0622600-01
Chr01	irgsp1_rep	three_prime_UTR	24843095	24843459	.	+	.	Parent=Os01t0622600-01
Chr01	irgsp1_rep	mRNA	24843770	24846832	.	-	.	ID=Os01t0622700-01;Name=Os01t0622700-01;Locus_id=Os01g0622700;Note=Similar to Protein ABIL1.;Transcript_evidence=AK102399 (DDBJ%2C Best hit);ORF_evidence=B6TCZ2 (UniProt);NIAS_FLcDNA=J033092I23;Expression=AK102399;TENOR=Os01t0622700-01;KEGG=Os01t0622700-01
Chr01	irgsp1_rep	five_prime_UTR	24846394	24846832	.	-	.	Parent=Os01t0622700-01
Chr01	irgsp1_rep	CDS	24846247	24846393	.	-	0	Parent=Os01t0622700-01
Chr01	irgsp1_rep	CDS	24846034	24846116	.	-	0	Parent=Os01t0622700-01
Chr01	irgsp1_rep	CDS	24845244	24845394	.	-	1	Parent=Os01t0622700-01
Chr01	irgsp1_rep	CDS	24845067	24845166	.	-	0	Parent=Os01t0622700-01
Chr01	irgsp1_rep	CDS	24844895	24844978	.	-	2	Parent=Os01t0622700-01
Chr01	irgsp1_rep	CDS	24844745	24844817	.	-	2	Parent=Os01t0622700-01
Chr01	irgsp1_rep	CDS	24844615	24844652	.	-	1	Parent=Os01t0622700-01
Chr01	irgsp1_rep	CDS	24844365	24844453	.	-	2	Parent=Os01t0622700-01
Chr01	irgsp1_rep	CDS	24844061	24844216	.	-	0	Parent=Os01t0622700-01
Chr01	irgsp1_rep	three_prime_UTR	24843770	24844060	.	-	.	Parent=Os01t0622700-01
Chr01	irgsp1_rep	mRNA	24843748	24846749	.	-	.	ID=Os01t0622700-02;Name=Os01t0622700-02;Locus_id=Os01g0622700;Note=Similar to Protein ABIL1.;Transcript_evidence=AK064316 (DDBJ%2C Best hit);ORF_evidence=B6TCZ2 (UniProt);NIAS_FLcDNA=002-107-C12;Expression=AK064316;TENOR=Os01t0622700-02;KEGG=Os01t0622700-02
Chr01	irgsp1_rep	five_prime_UTR	24846394	24846749	.	-	.	Parent=Os01t0622700-02
Chr01	irgsp1_rep	CDS	24846247	24846393	.	-	0	Parent=Os01t0622700-02
Chr01	irgsp1_rep	CDS	24846034	24846116	.	-	0	Parent=Os01t0622700-02
Chr01	irgsp1_rep	CDS	24845244	24845394	.	-	1	Parent=Os01t0622700-02
Chr01	irgsp1_rep	CDS	24845067	24845166	.	-	0	Parent=Os01t0622700-02
Chr01	irgsp1_rep	CDS	24844895	24844978	.	-	2	Parent=Os01t0622700-02
Chr01	irgsp1_rep	CDS	24844745	24844817	.	-	2	Parent=Os01t0622700-02
Chr01	irgsp1_rep	CDS	24844615	24844652	.	-	1	Parent=Os01t0622700-02
Chr01	irgsp1_rep	CDS	24844365	24844453	.	-	2	Parent=Os01t0622700-02
Chr01	irgsp1_rep	CDS	24844061	24844216	.	-	0	Parent=Os01t0622700-02
Chr01	irgsp1_rep	three_prime_UTR	24843748	24844060	.	-	.	Parent=Os01t0622700-02
Chr01	irgsp1_rep	mRNA	24850443	24851215	.	-	.	ID=Os01t0622800-01;Name=Os01t0622800-01;Locus_id=Os01g0622800;Note=Hypothetical protein.;Transcript_evidence=AK063171 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-110-H05;TENOR=Os01t0622800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	24851171	24851215	.	-	.	Parent=Os01t0622800-01
Chr01	irgsp1_rep	CDS	24850772	24851170	.	-	0	Parent=Os01t0622800-01
Chr01	irgsp1_rep	three_prime_UTR	24850443	24850771	.	-	.	Parent=Os01t0622800-01
Chr01	irgsp1_rep	mRNA	24850618	24851298	.	+	.	ID=Os01t0622901-01;Name=Os01t0622901-01;Locus_id=Os01g0622901;Note=Hypothetical conserved gene.;Transcript_evidence=AK288136 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J080306B03;TENOR=Os01t0622901-01;KEGG=Os01t0622901-01
Chr01	irgsp1_rep	five_prime_UTR	24850618	24850723	.	+	.	Parent=Os01t0622901-01
Chr01	irgsp1_rep	CDS	24850724	24851260	.	+	0	Parent=Os01t0622901-01
Chr01	irgsp1_rep	three_prime_UTR	24851261	24851298	.	+	.	Parent=Os01t0622901-01
Chr01	irgsp1_rep	mRNA	24855937	24857421	.	-	.	ID=Os01t0623000-00;Name=Os01t0623000-00;Locus_id=Os01g0623000;Oryzabase Gene Symbol Synonym(s)=OsTMM%2C TMM;Oryzabase Gene Name Synonym(s)=TOO MANY MOUTHS;Note=Hypothetical conserved gene.;Transcript_evidence=AK334313 (DDBJ);ORF_evidence=NP_178125.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591);Oryzabase=19853;TENOR=Os01t0623000-00;KEGG=Os01t0623000-00
Chr01	irgsp1_rep	CDS	24855937	24857421	.	-	0	Parent=Os01t0623000-00
Chr01	irgsp1_rep	mRNA	24861697	24864291	.	-	.	ID=Os01t0623200-01;Name=Os01t0623200-01;Locus_id=Os01g0623200;Oryzabase Gene Symbol Synonym(s)=SLAC;Oryzabase Gene Name Synonym(s)=SLOW ANION CHANNEL;Note=Similar to C4-dicarboxylate transporter/malic acid transport protein.;Transcript_evidence=AK241218 (DDBJ%2C Best hit);ORF_evidence=B6SWN8 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=C4-dicarboxylate transporter/malic acid transport protein (IPR004695);NIAS_FLcDNA=J065123I09;Oryzabase=21758;TENOR=Os01t0623200-01;KEGG=Os01t0623200-01
Chr01	irgsp1_rep	five_prime_UTR	24864073	24864291	.	-	.	Parent=Os01t0623200-01
Chr01	irgsp1_rep	five_prime_UTR	24863939	24863952	.	-	.	Parent=Os01t0623200-01
Chr01	irgsp1_rep	CDS	24862391	24863938	.	-	0	Parent=Os01t0623200-01
Chr01	irgsp1_rep	CDS	24861854	24862282	.	-	0	Parent=Os01t0623200-01
Chr01	irgsp1_rep	three_prime_UTR	24861697	24861853	.	-	.	Parent=Os01t0623200-01
Chr01	irgsp1_rep	mRNA	24894706	24899506	.	+	.	ID=Os01t0623500-01;Name=Os01t0623500-01;Locus_id=Os01g0623500;Note=ATPase%2C AAA-type%2C core domain containing protein.;Transcript_evidence=AK066142 (DDBJ%2C Best hit);ORF_evidence=A2WSS0 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);NIAS_FLcDNA=J013055O07;Expression=AK066142;TENOR=Os01t0623500-01;KEGG=Os01t0623500-01
Chr01	irgsp1_rep	five_prime_UTR	24894706	24894832	.	+	.	Parent=Os01t0623500-01
Chr01	irgsp1_rep	CDS	24894833	24895035	.	+	0	Parent=Os01t0623500-01
Chr01	irgsp1_rep	CDS	24895303	24895424	.	+	1	Parent=Os01t0623500-01
Chr01	irgsp1_rep	CDS	24895522	24895610	.	+	2	Parent=Os01t0623500-01
Chr01	irgsp1_rep	CDS	24895702	24895737	.	+	0	Parent=Os01t0623500-01
Chr01	irgsp1_rep	CDS	24896157	24896256	.	+	0	Parent=Os01t0623500-01
Chr01	irgsp1_rep	CDS	24896413	24896455	.	+	2	Parent=Os01t0623500-01
Chr01	irgsp1_rep	CDS	24896534	24896628	.	+	1	Parent=Os01t0623500-01
Chr01	irgsp1_rep	CDS	24896867	24896925	.	+	2	Parent=Os01t0623500-01
Chr01	irgsp1_rep	CDS	24897003	24897502	.	+	0	Parent=Os01t0623500-01
Chr01	irgsp1_rep	CDS	24897580	24897661	.	+	1	Parent=Os01t0623500-01
Chr01	irgsp1_rep	CDS	24897753	24898318	.	+	0	Parent=Os01t0623500-01
Chr01	irgsp1_rep	CDS	24898409	24898544	.	+	1	Parent=Os01t0623500-01
Chr01	irgsp1_rep	CDS	24898639	24898701	.	+	0	Parent=Os01t0623500-01
Chr01	irgsp1_rep	CDS	24898831	24899061	.	+	0	Parent=Os01t0623500-01
Chr01	irgsp1_rep	CDS	24899171	24899284	.	+	0	Parent=Os01t0623500-01
Chr01	irgsp1_rep	three_prime_UTR	24899285	24899506	.	+	.	Parent=Os01t0623500-01
Chr01	irgsp1_rep	mRNA	24896894	24899282	.	-	.	ID=Os01t0623550-00;Name=Os01t0623550-00;Locus_id=Os01g0623550;Note=Hypothetical protein.;Transcript_evidence=tplb0025l23 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0623550-00
Chr01	irgsp1_rep	five_prime_UTR	24898993	24899282	.	-	.	Parent=Os01t0623550-00
Chr01	irgsp1_rep	five_prime_UTR	24898407	24898564	.	-	.	Parent=Os01t0623550-00
Chr01	irgsp1_rep	five_prime_UTR	24898208	24898316	.	-	.	Parent=Os01t0623550-00
Chr01	irgsp1_rep	CDS	24897890	24898207	.	-	0	Parent=Os01t0623550-00
Chr01	irgsp1_rep	three_prime_UTR	24896894	24897889	.	-	.	Parent=Os01t0623550-00
Chr01	irgsp1_rep	mRNA	24899508	24901813	.	-	.	ID=Os01t0623600-01;Name=Os01t0623600-01;Locus_id=Os01g0623600;Oryzabase Gene Symbol Synonym(s)=OsPGL32%2C PGL32;Oryzabase Gene Name Synonym(s)=Polygalacturonases-Like 32%2C PG-like 32;Note=Glycoside hydrolase%2C family 28 protein.;Transcript_evidence=AK103106 (DDBJ%2C Best hit);ORF_evidence=Q1A230 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=J033118O22;Oryzabase=22309;Expression=AK103106;TENOR=Os01t0623600-01;KEGG=Os01t0623600-01
Chr01	irgsp1_rep	five_prime_UTR	24901813	24901813	.	-	.	Parent=Os01t0623600-01
Chr01	irgsp1_rep	CDS	24901309	24901812	.	-	0	Parent=Os01t0623600-01
Chr01	irgsp1_rep	CDS	24900663	24901193	.	-	0	Parent=Os01t0623600-01
Chr01	irgsp1_rep	CDS	24899843	24900064	.	-	0	Parent=Os01t0623600-01
Chr01	irgsp1_rep	three_prime_UTR	24899508	24899842	.	-	.	Parent=Os01t0623600-01
Chr01	irgsp1_rep	mRNA	24900667	24901663	.	+	.	ID=Os01t0623750-00;Name=Os01t0623750-00;Locus_id=Os01g0623750;Note=Hypothetical protein.;Transcript_evidence=tplb0028j17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0623750-00
Chr01	irgsp1_rep	five_prime_UTR	24900667	24900711	.	+	.	Parent=Os01t0623750-00
Chr01	irgsp1_rep	CDS	24900712	24901166	.	+	0	Parent=Os01t0623750-00
Chr01	irgsp1_rep	CDS	24901257	24901663	.	+	1	Parent=Os01t0623750-00
Chr01	irgsp1_rep	mRNA	24908651	24910090	.	+	.	ID=Os01t0623900-01;Name=Os01t0623900-01;Locus_id=Os01g0623900;Note=Conserved hypothetical protein.;Transcript_evidence=AK242918 (DDBJ%2C Best hit);ORF_evidence=NP_001172468.1 (RefSeq);NIAS_FLcDNA=J090084L02;TENOR=Os01t0623900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	24908651	24908742	.	+	.	Parent=Os01t0623900-01
Chr01	irgsp1_rep	CDS	24908743	24909561	.	+	0	Parent=Os01t0623900-01
Chr01	irgsp1_rep	three_prime_UTR	24909562	24910090	.	+	.	Parent=Os01t0623900-01
Chr01	irgsp1_rep	mRNA	24913624	24924014	.	-	.	ID=Os01t0624000-01;Name=Os01t0624000-01;Locus_id=Os01g0624000;Note=Neutral/alkaline nonlysosomal ceramidase family protein.;Transcript_evidence=AK069738 (DDBJ%2C Best hit);ORF_evidence=A9YFM2 (UniProt);InterPro=Neutral/alkaline nonlysosomal ceramidase (IPR006823);NIAS_FLcDNA=J023028C17;Expression=AK069738;TENOR=Os01t0624000-01;KEGG=Os01t0624000-01
Chr01	irgsp1_rep	five_prime_UTR	24923585	24924014	.	-	.	Parent=Os01t0624000-01
Chr01	irgsp1_rep	five_prime_UTR	24922745	24922807	.	-	.	Parent=Os01t0624000-01
Chr01	irgsp1_rep	CDS	24922398	24922744	.	-	0	Parent=Os01t0624000-01
Chr01	irgsp1_rep	CDS	24921363	24921571	.	-	1	Parent=Os01t0624000-01
Chr01	irgsp1_rep	CDS	24920275	24920643	.	-	2	Parent=Os01t0624000-01
Chr01	irgsp1_rep	CDS	24919921	24920176	.	-	2	Parent=Os01t0624000-01
Chr01	irgsp1_rep	CDS	24919562	24919832	.	-	1	Parent=Os01t0624000-01
Chr01	irgsp1_rep	CDS	24919361	24919486	.	-	0	Parent=Os01t0624000-01
Chr01	irgsp1_rep	CDS	24918805	24918868	.	-	0	Parent=Os01t0624000-01
Chr01	irgsp1_rep	CDS	24918509	24918675	.	-	2	Parent=Os01t0624000-01
Chr01	irgsp1_rep	CDS	24913843	24914391	.	-	0	Parent=Os01t0624000-01
Chr01	irgsp1_rep	three_prime_UTR	24913624	24913842	.	-	.	Parent=Os01t0624000-01
Chr01	irgsp1_rep	mRNA	24913551	24923908	.	-	.	ID=Os01t0624000-02;Name=Os01t0624000-02;Locus_id=Os01g0624000;Note=Neutral/alkaline nonlysosomal ceramidase family protein.;Transcript_evidence=AK099625 (DDBJ%2C Best hit);ORF_evidence=A9YFM2 (UniProt);InterPro=Neutral/alkaline nonlysosomal ceramidase (IPR006823);NIAS_FLcDNA=J013054N18;Expression=AK099625;TENOR=Os01t0624000-02;KEGG=Os01t0624000-02
Chr01	irgsp1_rep	five_prime_UTR	24923585	24923908	.	-	.	Parent=Os01t0624000-02
Chr01	irgsp1_rep	five_prime_UTR	24922745	24922807	.	-	.	Parent=Os01t0624000-02
Chr01	irgsp1_rep	CDS	24922398	24922744	.	-	0	Parent=Os01t0624000-02
Chr01	irgsp1_rep	CDS	24921363	24921571	.	-	1	Parent=Os01t0624000-02
Chr01	irgsp1_rep	CDS	24920275	24920643	.	-	2	Parent=Os01t0624000-02
Chr01	irgsp1_rep	CDS	24919921	24920176	.	-	2	Parent=Os01t0624000-02
Chr01	irgsp1_rep	CDS	24919562	24919832	.	-	1	Parent=Os01t0624000-02
Chr01	irgsp1_rep	CDS	24919361	24919486	.	-	0	Parent=Os01t0624000-02
Chr01	irgsp1_rep	CDS	24918805	24918868	.	-	0	Parent=Os01t0624000-02
Chr01	irgsp1_rep	CDS	24918509	24918675	.	-	2	Parent=Os01t0624000-02
Chr01	irgsp1_rep	CDS	24913843	24914391	.	-	0	Parent=Os01t0624000-02
Chr01	irgsp1_rep	three_prime_UTR	24913551	24913842	.	-	.	Parent=Os01t0624000-02
Chr01	irgsp1_rep	mRNA	24919736	24923783	.	-	.	ID=Os01t0624000-03;Name=Os01t0624000-03;Locus_id=Os01g0624000;Note=Similar to Neutral ceramidase.;Transcript_evidence=AK071073 (DDBJ%2C Best hit);ORF_evidence=A9YFM2 (UniProt);InterPro=Neutral/alkaline nonlysosomal ceramidase (IPR006823);NIAS_FLcDNA=J023076B04;Expression=AK071073;TENOR=Os01t0624000-03;KEGG=Os01t0624000-03
Chr01	irgsp1_rep	five_prime_UTR	24923585	24923783	.	-	.	Parent=Os01t0624000-03
Chr01	irgsp1_rep	five_prime_UTR	24922745	24922807	.	-	.	Parent=Os01t0624000-03
Chr01	irgsp1_rep	CDS	24922398	24922744	.	-	0	Parent=Os01t0624000-03
Chr01	irgsp1_rep	CDS	24921363	24921571	.	-	1	Parent=Os01t0624000-03
Chr01	irgsp1_rep	CDS	24920275	24920643	.	-	2	Parent=Os01t0624000-03
Chr01	irgsp1_rep	CDS	24919921	24920176	.	-	2	Parent=Os01t0624000-03
Chr01	irgsp1_rep	CDS	24919736	24919832	.	-	1	Parent=Os01t0624000-03
Chr01	irgsp1_rep	mRNA	24913567	24919962	.	-	.	ID=Os01t0624000-04;Name=Os01t0624000-04;Locus_id=Os01g0624000;Note=Similar to Neutral ceramidase.;Transcript_evidence=AK071952 (DDBJ%2C Best hit);ORF_evidence=A9YFM2 (UniProt);InterPro=Neutral/alkaline nonlysosomal ceramidase (IPR006823);NIAS_FLcDNA=J013084M07;Expression=AK071952;TENOR=Os01t0624000-04;KEGG=Os01t0624000-04
Chr01	irgsp1_rep	five_prime_UTR	24919962	24919962	.	-	.	Parent=Os01t0624000-04
Chr01	irgsp1_rep	CDS	24919921	24919961	.	-	0	Parent=Os01t0624000-04
Chr01	irgsp1_rep	CDS	24919562	24919832	.	-	1	Parent=Os01t0624000-04
Chr01	irgsp1_rep	CDS	24919361	24919486	.	-	0	Parent=Os01t0624000-04
Chr01	irgsp1_rep	CDS	24918805	24918868	.	-	0	Parent=Os01t0624000-04
Chr01	irgsp1_rep	CDS	24918509	24918675	.	-	2	Parent=Os01t0624000-04
Chr01	irgsp1_rep	CDS	24913843	24914391	.	-	0	Parent=Os01t0624000-04
Chr01	irgsp1_rep	three_prime_UTR	24913567	24913842	.	-	.	Parent=Os01t0624000-04
Chr01	irgsp1_rep	mRNA	24913803	24922792	.	+	.	ID=Os01t0624133-00;Name=Os01t0624133-00;Locus_id=Os01g0624133;Note=Non-protein coding transcript.;Transcript_evidence=tplb0026a06 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os01t0624133-00
Chr01	irgsp1_rep	exon	24913803	24914380	.	+	.	Parent=Os01t0624133-00
Chr01	irgsp1_rep	exon	24918498	24918665	.	+	.	Parent=Os01t0624133-00
Chr01	irgsp1_rep	exon	24918793	24918858	.	+	.	Parent=Os01t0624133-00
Chr01	irgsp1_rep	exon	24919350	24919485	.	+	.	Parent=Os01t0624133-00
Chr01	irgsp1_rep	exon	24919561	24919828	.	+	.	Parent=Os01t0624133-00
Chr01	irgsp1_rep	exon	24919908	24920168	.	+	.	Parent=Os01t0624133-00
Chr01	irgsp1_rep	exon	24920267	24920638	.	+	.	Parent=Os01t0624133-00
Chr01	irgsp1_rep	exon	24921351	24921568	.	+	.	Parent=Os01t0624133-00
Chr01	irgsp1_rep	exon	24922395	24922792	.	+	.	Parent=Os01t0624133-00
Chr01	irgsp1_rep	mRNA	24933111	24933821	.	+	.	ID=Os01t0624400-00;Name=Os01t0624400-00;Locus_id=Os01g0624400;CGSNL Gene Symbol=LEA6;CGSNL Gene Name=LATE EMBRYOGENESIS ABUNDANT PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsLEA6;Oryzabase Gene Name Synonym(s)=late embryogenesis abundant protein 6;Note=Similar to Dehydrin.;Transcript_evidence=CT836534 (DDBJ%2C Best hit);ORF_evidence=Q5CAQ2 (UniProt);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864),Immunoglobulin-like fold (IPR013783);Oryzabase=10174;TENOR=Os01t0624400-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	24933111	24933112	.	+	.	Parent=Os01t0624400-00
Chr01	irgsp1_rep	CDS	24933113	24933568	.	+	0	Parent=Os01t0624400-00
Chr01	irgsp1_rep	three_prime_UTR	24933569	24933821	.	+	.	Parent=Os01t0624400-00
Chr01	irgsp1_rep	mRNA	24937665	24942799	.	+	.	ID=Os01t0624500-01;Name=Os01t0624500-01;Locus_id=Os01g0624500;RAP-DB Gene Symbol Synonym(s)=OsSGT1;Oryzabase Gene Symbol Synonym(s)=OsSgt1%2C SGT1%2C OsSGT1%2C Os SGT1;Oryzabase Gene Name Synonym(s)=suppressor of the G2 allele of skp1;Note=A subunit of the SCF ubiquitin ligase complex%2C Molecular chaperone%2C Regulation of responses to salt stress and bacterial blight;Transcript_evidence=AK059268 (truncated),Inferred from literature;ORF_evidence=Q0JL44;GO=Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical domain superfamily (IPR011990),HSP20-like chaperone (IPR008978),Tetratricopeptide repeat-containing domain (IPR013026),CS domain (IPR007052),SGS domain (IPR007699),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=001-025-B06 (truncated);Manual Curation=November 14%2C 2019;Literature_PMID=31712918,18257679,14733924;Oryzabase=11520;Expression=AK059268;TENOR=Os01t0624500-01;KEGG=Os01t0624500-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=cytoplasm (GO:0005737), nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	24937665	24937748	.	+	.	Parent=Os01t0624500-01
Chr01	irgsp1_rep	CDS	24937749	24937920	.	+	0	Parent=Os01t0624500-01
Chr01	irgsp1_rep	CDS	24939924	24939993	.	+	2	Parent=Os01t0624500-01
Chr01	irgsp1_rep	CDS	24940081	24940205	.	+	1	Parent=Os01t0624500-01
Chr01	irgsp1_rep	CDS	24940428	24940566	.	+	2	Parent=Os01t0624500-01
Chr01	irgsp1_rep	CDS	24940815	24940911	.	+	1	Parent=Os01t0624500-01
Chr01	irgsp1_rep	CDS	24940994	24941059	.	+	0	Parent=Os01t0624500-01
Chr01	irgsp1_rep	CDS	24941367	24941505	.	+	0	Parent=Os01t0624500-01
Chr01	irgsp1_rep	CDS	24942065	24942147	.	+	2	Parent=Os01t0624500-01
Chr01	irgsp1_rep	CDS	24942244	24942348	.	+	0	Parent=Os01t0624500-01
Chr01	irgsp1_rep	CDS	24942468	24942575	.	+	0	Parent=Os01t0624500-01
Chr01	irgsp1_rep	three_prime_UTR	24942576	24942799	.	+	.	Parent=Os01t0624500-01
Chr01	irgsp1_rep	mRNA	24945282	24947217	.	-	.	ID=Os01t0624700-01;Name=Os01t0624700-01;Locus_id=Os01g0624700;CGSNL Gene Symbol=WRKY12;CGSNL Gene Name=WRKY GENE 12;Oryzabase Gene Symbol Synonym(s)=OsWRKY12;Oryzabase Gene Name Synonym(s)=Rice WRKY gene12;Note=Similar to WRKY transcription factor 12.;Transcript_evidence=AK111416 (DDBJ%2C Best hit);ORF_evidence=Q6IER9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);NIAS_FLcDNA=002-182-G03;Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6523;Expression=AK111416;TENOR=Os01t0624700-01;KEGG=Os01t0624700-01
Chr01	irgsp1_rep	five_prime_UTR	24947196	24947217	.	-	.	Parent=Os01t0624700-01
Chr01	irgsp1_rep	CDS	24946729	24947195	.	-	0	Parent=Os01t0624700-01
Chr01	irgsp1_rep	CDS	24946480	24946602	.	-	1	Parent=Os01t0624700-01
Chr01	irgsp1_rep	CDS	24945600	24946056	.	-	1	Parent=Os01t0624700-01
Chr01	irgsp1_rep	three_prime_UTR	24945282	24945599	.	-	.	Parent=Os01t0624700-01
Chr01	irgsp1_rep	mRNA	24961079	24962826	.	+	.	ID=Os01t0625200-01;Name=Os01t0625200-01;Locus_id=Os01g0625200;Note=Similar to kinesin motor family protein.;Transcript_evidence=AK060383 (DDBJ%2C Best hit);ORF_evidence=NP_566534.1 (RefSeq);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752);NIAS_FLcDNA=001-009-F02;TENOR=Os01t0625200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	24961079	24961178	.	+	.	Parent=Os01t0625200-01
Chr01	irgsp1_rep	CDS	24961179	24961402	.	+	0	Parent=Os01t0625200-01
Chr01	irgsp1_rep	CDS	24961487	24961946	.	+	1	Parent=Os01t0625200-01
Chr01	irgsp1_rep	CDS	24962064	24962129	.	+	0	Parent=Os01t0625200-01
Chr01	irgsp1_rep	CDS	24962221	24962400	.	+	0	Parent=Os01t0625200-01
Chr01	irgsp1_rep	three_prime_UTR	24962401	24962826	.	+	.	Parent=Os01t0625200-01
Chr01	irgsp1_rep	mRNA	24961579	24962826	.	+	.	ID=Os01t0625200-02;Name=Os01t0625200-02;Locus_id=Os01g0625200;Note=Hypothetical conserved gene.;Transcript_evidence=AK071022 (DDBJ%2C Best hit);ORF_evidence=B9EY52 (UniProt);NIAS_FLcDNA=J023079H05;Expression=AK071022;TENOR=Os01t0625200-02;KEGG=Os01t0625200-02
Chr01	irgsp1_rep	five_prime_UTR	24961579	24961580	.	+	.	Parent=Os01t0625200-02
Chr01	irgsp1_rep	CDS	24961581	24961946	.	+	0	Parent=Os01t0625200-02
Chr01	irgsp1_rep	CDS	24962064	24962129	.	+	0	Parent=Os01t0625200-02
Chr01	irgsp1_rep	CDS	24962221	24962400	.	+	0	Parent=Os01t0625200-02
Chr01	irgsp1_rep	three_prime_UTR	24962401	24962826	.	+	.	Parent=Os01t0625200-02
Chr01	irgsp1_rep	mRNA	24967398	24969047	.	+	.	ID=Os01t0625300-01;Name=Os01t0625300-01;Locus_id=Os01g0625300;CGSNL Gene Symbol=HSFC1A;CGSNL Gene Name=HEAT STRESS TRANSCRIPTION FACTOR C1A;Oryzabase Gene Symbol Synonym(s)=HSfC1a%2C OsHsfC1a%2C OsHsf-02%2C OsHSF2%2C HSF2%2C rHsf13%2C HSF02%2C HSF13;Oryzabase Gene Name Synonym(s)=Heat stress transcription factor C1a%2C Heat stress transcription factor C-1a%2C Heat stress transcription factor 2%2C Heat stress transcription factor 13;Note=Similar to Heat shock transcription factor 31 (Fragment).;Transcript_evidence=AK069479 (DDBJ%2C Best hit);ORF_evidence=Q6VBA4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Heat shock factor (HSF)-type%2C DNA-binding (IPR000232),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=J023019J23;Oryzabase=8568;Expression=AK069479;TENOR=Os01t0625300-01;KEGG=Os01t0625300-01
Chr01	irgsp1_rep	five_prime_UTR	24967398	24967509	.	+	.	Parent=Os01t0625300-01
Chr01	irgsp1_rep	CDS	24967510	24967764	.	+	0	Parent=Os01t0625300-01
Chr01	irgsp1_rep	CDS	24967844	24968608	.	+	0	Parent=Os01t0625300-01
Chr01	irgsp1_rep	three_prime_UTR	24968609	24969047	.	+	.	Parent=Os01t0625300-01
Chr01	irgsp1_rep	mRNA	24981269	24982666	.	-	.	ID=Os01t0625900-01;Name=Os01t0625900-01;Locus_id=Os01g0625900;RAP-DB Gene Symbol Synonym(s)=OsOFP2%2C OsOFP03%2C OFP2;RAP-DB Gene Name Synonym(s)=OVATE family protein 2%2C ovate family protein 3%2C OVATE-domain containing protein 3;CGSNL Gene Symbol=OFP2;CGSNL Gene Name=OVATE FAMILY PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsOFP2%2C OsOFP03;Oryzabase Gene Name Synonym(s)=OVATE family protein 2%2C ovate family protein 3%2C OVATE-domain containing protein 3;Note=Ovate Family Protein%2C Hormonal homeostasis%2C Vasculature development;Transcript_evidence=AK063574;ORF_evidence=Q5ZEA2;InterPro=Ovate  protein family%2C C-terminal (IPR006458);NIAS_FLcDNA=001-117-G11;Manual Curation=April 11%2C 2016;Literature_PMID=26706069;Oryzabase=18298;Expression=AK063574;TENOR=Os01t0625900-01;KEGG=Os01t0625900-01
Chr01	irgsp1_rep	five_prime_UTR	24982598	24982666	.	-	.	Parent=Os01t0625900-01
Chr01	irgsp1_rep	CDS	24981497	24982597	.	-	0	Parent=Os01t0625900-01
Chr01	irgsp1_rep	three_prime_UTR	24981269	24981496	.	-	.	Parent=Os01t0625900-01
Chr01	irgsp1_rep	mRNA	24986982	24988791	.	+	.	ID=Os01t0626032-01;Name=Os01t0626032-01;Locus_id=Os01g0626032;Note=Non-protein coding transcript.;Transcript_evidence=AK289210 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J100059C14;TENOR=Os01t0626032-01
Chr01	irgsp1_rep	exon	24986982	24988791	.	+	.	Parent=Os01t0626032-01
Chr01	irgsp1_rep	mRNA	24994743	24997782	.	+	.	ID=Os01t0626100-01;Name=Os01t0626100-01;Locus_id=Os01g0626100;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK066892 (DDBJ%2C Best hit);ORF_evidence=B6U245 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: membrane coat (GO:0030117),Molecular Function: binding (GO:0005488);InterPro=Clathrin/coatomer adaptor%2C adaptin-like%2C N-terminal (IPR002553),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013088A19;Expression=AK066892;TENOR=Os01t0626100-01;KEGG=Os01t0626100-01
Chr01	irgsp1_rep	five_prime_UTR	24994743	24994803	.	+	.	Parent=Os01t0626100-01
Chr01	irgsp1_rep	CDS	24994804	24994859	.	+	0	Parent=Os01t0626100-01
Chr01	irgsp1_rep	CDS	24994965	24995529	.	+	1	Parent=Os01t0626100-01
Chr01	irgsp1_rep	three_prime_UTR	24995530	24997782	.	+	.	Parent=Os01t0626100-01
Chr01	irgsp1_rep	mRNA	25002693	25003291	.	+	.	ID=Os01t0626200-01;Name=Os01t0626200-01;Locus_id=Os01g0626200;Note=Clathrin adaptor%2C beta-adaptin%2C appendage%2C C-terminal subdomain domain containing protein.;Transcript_evidence=AK061897 (DDBJ%2C Best hit);ORF_evidence=B6U245 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: clathrin adaptor complex (GO:0030131);InterPro=Clathrin adaptor%2C beta-adaptin%2C appendage%2C C-terminal subdomain (IPR015151);NIAS_FLcDNA=001-041-G12;TENOR=Os01t0626200-01;KEGG=Os01t0626200-01
Chr01	irgsp1_rep	five_prime_UTR	25002693	25002693	.	+	.	Parent=Os01t0626200-01
Chr01	irgsp1_rep	CDS	25002694	25002855	.	+	0	Parent=Os01t0626200-01
Chr01	irgsp1_rep	three_prime_UTR	25002856	25003291	.	+	.	Parent=Os01t0626200-01
Chr01	irgsp1_rep	mRNA	25004123	25004701	.	-	.	ID=Os01t0626300-01;Name=Os01t0626300-01;Locus_id=Os01g0626300;Note=Similar to Mitochondrial import receptor subunit TOM7-1 (Translocase of outer membrane 7 kDa subunit 1).;Transcript_evidence=AK122071 (DDBJ%2C Best hit);ORF_evidence=NP_001150221.1 (RefSeq);GO=Biological Process: intracellular protein transport (GO:0006886),Cellular Component: mitochondrial outer membrane (GO:0005741),Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450);InterPro=Mitochondrial outer membrane translocase complex%2C subunit Tom7 (IPR012621);NIAS_FLcDNA=J033117J08;Expression=AK122071;TENOR=Os01t0626300-01;KEGG=Os01t0626300-01
Chr01	irgsp1_rep	five_prime_UTR	25004614	25004701	.	-	.	Parent=Os01t0626300-01
Chr01	irgsp1_rep	CDS	25004371	25004613	.	-	0	Parent=Os01t0626300-01
Chr01	irgsp1_rep	three_prime_UTR	25004123	25004370	.	-	.	Parent=Os01t0626300-01
Chr01	irgsp1_rep	mRNA	25004212	25004702	.	+	.	ID=Os01t0626350-00;Name=Os01t0626350-00;Locus_id=Os01g0626350;Note=Non-protein coding transcript.;Transcript_evidence=BT019308 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0626350-00
Chr01	irgsp1_rep	exon	25004212	25004702	.	+	.	Parent=Os01t0626350-00
Chr01	irgsp1_rep	mRNA	25009514	25012233	.	+	.	ID=Os01t0626400-01;Name=Os01t0626400-01;Locus_id=Os01g0626400;RAP-DB Gene Symbol Synonym(s)=WRKY11%2C OsWRKY11%2C Dlf1%2C OsWRKY11.1;RAP-DB Gene Name Synonym(s)=WRKY GENE11%2C Rice WRKY gene11%2C semidwarf and late flowering 1;CGSNL Gene Symbol=WRKY11;CGSNL Gene Name=WRKY GENE11;Oryzabase Gene Symbol Synonym(s)=OsWRKY11%2C Dlf1%2C OsWRKY11.1%2C OsWRKY11.2;Oryzabase Gene Name Synonym(s)=Rice WRKY gene11%2C semidwarf and late flowering 1;Note=WRKY transcription factor%2C Control of flowering time and plant height;Transcript_evidence=AK108745;ORF_evidence=Q9FE35;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=WRKY domain (IPR003657);NIAS_FLcDNA=002-150-E09;Manual Curation=December 1%2C 2016;Literature_PMID=25036785,Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6522;Expression=AK108745;TENOR=Os01t0626400-01;KEGG=Os01t0626400-01
Chr01	irgsp1_rep	five_prime_UTR	25009514	25009545	.	+	.	Parent=Os01t0626400-01
Chr01	irgsp1_rep	CDS	25009546	25010075	.	+	0	Parent=Os01t0626400-01
Chr01	irgsp1_rep	CDS	25010996	25011139	.	+	1	Parent=Os01t0626400-01
Chr01	irgsp1_rep	CDS	25011303	25011768	.	+	1	Parent=Os01t0626400-01
Chr01	irgsp1_rep	three_prime_UTR	25011769	25011916	.	+	.	Parent=Os01t0626400-01
Chr01	irgsp1_rep	three_prime_UTR	25012062	25012233	.	+	.	Parent=Os01t0626400-01
Chr01	irgsp1_rep	mRNA	25009546	25011602	.	+	.	ID=Os01t0626400-02;Name=Os01t0626400-02;Locus_id=Os01g0626400;RAP-DB Gene Symbol Synonym(s)=WRKY11%2C OsWRKY11.2;RAP-DB Gene Name Synonym(s)=WRKY GENE11;CGSNL Gene Symbol=WRKY11;CGSNL Gene Name=WRKY GENE11;Oryzabase Gene Symbol Synonym(s)=OsWRKY11%2C Dlf1%2C OsWRKY11.1%2C OsWRKY11.2;Oryzabase Gene Name Synonym(s)=Rice WRKY gene11%2C semidwarf and late flowering 1;Note=WRKY transcription factor%2C Splicing variant;Transcript_evidence=Inferred from literature (Zhonghua 11);ORF_evidence=Inferred from literature;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=WRKY domain (IPR003657);Manual Curation=December 1%2C 2016;Literature_PMID=25036785;Oryzabase=6522
Chr01	irgsp1_rep	CDS	25009546	25010075	.	+	0	Parent=Os01t0626400-02
Chr01	irgsp1_rep	CDS	25010996	25011139	.	+	1	Parent=Os01t0626400-02
Chr01	irgsp1_rep	CDS	25011303	25011427	.	+	1	Parent=Os01t0626400-02
Chr01	irgsp1_rep	CDS	25011589	25011602	.	+	2	Parent=Os01t0626400-02
Chr01	irgsp1_rep	mRNA	25019149	25021608	.	-	.	ID=Os01t0626500-01;Name=Os01t0626500-01;Locus_id=Os01g0626500;Note=Conserved hypothetical protein.;Transcript_evidence=AK067735 (DDBJ%2C Best hit);ORF_evidence=B9F450 (UniProt);NIAS_FLcDNA=J013119C08;TENOR=Os01t0626500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	25021376	25021608	.	-	.	Parent=Os01t0626500-01
Chr01	irgsp1_rep	five_prime_UTR	25020935	25021277	.	-	.	Parent=Os01t0626500-01
Chr01	irgsp1_rep	CDS	25020752	25020934	.	-	0	Parent=Os01t0626500-01
Chr01	irgsp1_rep	three_prime_UTR	25020337	25020751	.	-	.	Parent=Os01t0626500-01
Chr01	irgsp1_rep	three_prime_UTR	25019149	25020259	.	-	.	Parent=Os01t0626500-01
Chr01	irgsp1_rep	mRNA	25029829	25033240	.	-	.	ID=Os01t0626900-01;Name=Os01t0626900-01;Locus_id=Os01g0626900;Oryzabase Gene Symbol Synonym(s)=OsbHLH180%2C bHLH180%2C OsSACL3C%2C SACL3C;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 180;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=AK071582 (DDBJ%2C Best hit);ORF_evidence=A2WST9 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J023099H13;Oryzabase=22851;Expression=AK071582;TENOR=Os01t0626900-01;KEGG=Os01t0626900-01
Chr01	irgsp1_rep	five_prime_UTR	25033006	25033240	.	-	.	Parent=Os01t0626900-01
Chr01	irgsp1_rep	five_prime_UTR	25032346	25032466	.	-	.	Parent=Os01t0626900-01
Chr01	irgsp1_rep	five_prime_UTR	25032066	25032255	.	-	.	Parent=Os01t0626900-01
Chr01	irgsp1_rep	five_prime_UTR	25031114	25031396	.	-	.	Parent=Os01t0626900-01
Chr01	irgsp1_rep	CDS	25030376	25031113	.	-	0	Parent=Os01t0626900-01
Chr01	irgsp1_rep	three_prime_UTR	25029829	25030375	.	-	.	Parent=Os01t0626900-01
Chr01	irgsp1_rep	mRNA	25040769	25043903	.	+	.	ID=Os01t0627400-01;Name=Os01t0627400-01;Locus_id=Os01g0627400;CGSNL Gene Symbol=CYP72A17;CGSNL Gene Name=CYTOCHROME P450 72A17;Oryzabase Gene Symbol Synonym(s)=OsCYP72A17;Oryzabase Gene Name Synonym(s)=CytoChrome P450 72A17;Note=Similar to CytoChrome P450 monooxygenase CYP72A5 (Fragment).;Transcript_evidence=AK074025 (DDBJ%2C Best hit);ORF_evidence=Q8LL74 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J033076L02;Oryzabase=21839;Expression=AK074025;TENOR=Os01t0627400-01;KEGG=Os01t0627400-01
Chr01	irgsp1_rep	five_prime_UTR	25040769	25040812	.	+	.	Parent=Os01t0627400-01
Chr01	irgsp1_rep	CDS	25040813	25041185	.	+	0	Parent=Os01t0627400-01
Chr01	irgsp1_rep	CDS	25041388	25041611	.	+	2	Parent=Os01t0627400-01
Chr01	irgsp1_rep	CDS	25041895	25042142	.	+	0	Parent=Os01t0627400-01
Chr01	irgsp1_rep	CDS	25042798	25043185	.	+	1	Parent=Os01t0627400-01
Chr01	irgsp1_rep	CDS	25043281	25043712	.	+	0	Parent=Os01t0627400-01
Chr01	irgsp1_rep	three_prime_UTR	25043713	25043903	.	+	.	Parent=Os01t0627400-01
Chr01	irgsp1_rep	mRNA	25040923	25043717	.	-	.	ID=Os01t0627450-00;Name=Os01t0627450-00;Locus_id=Os01g0627450;Note=Hypothetical protein.;Transcript_evidence=tplb0037h21 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0627450-00
Chr01	irgsp1_rep	five_prime_UTR	25043601	25043717	.	-	.	Parent=Os01t0627450-00
Chr01	irgsp1_rep	CDS	25043248	25043600	.	-	0	Parent=Os01t0627450-00
Chr01	irgsp1_rep	CDS	25042937	25043153	.	-	1	Parent=Os01t0627450-00
Chr01	irgsp1_rep	three_prime_UTR	25042806	25042936	.	-	.	Parent=Os01t0627450-00
Chr01	irgsp1_rep	three_prime_UTR	25041886	25042157	.	-	.	Parent=Os01t0627450-00
Chr01	irgsp1_rep	three_prime_UTR	25041404	25041605	.	-	.	Parent=Os01t0627450-00
Chr01	irgsp1_rep	three_prime_UTR	25040923	25041205	.	-	.	Parent=Os01t0627450-00
Chr01	irgsp1_rep	mRNA	25045721	25049413	.	-	.	ID=Os01t0627500-01;Name=Os01t0627500-01;Locus_id=Os01g0627500;CGSNL Gene Symbol=CYP72A18;CGSNL Gene Name=CYTOCHROME P450 72A18;Oryzabase Gene Symbol Synonym(s)=OsCYP72A18;Oryzabase Gene Name Synonym(s)=CytoChrome P450 72A18;Note=CytoChrome P450 family protein.;Transcript_evidence=AK101545 (DDBJ%2C Best hit),AK105255 (DDBJ%2C Best hit);ORF_evidence=Q8LL74 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J033048K24,001-114-F02;Oryzabase=21840;Expression=AK101545;TENOR=Os01t0627500-01;KEGG=Os01t0627500-01
Chr01	irgsp1_rep	five_prime_UTR	25049275	25049413	.	-	.	Parent=Os01t0627500-01
Chr01	irgsp1_rep	CDS	25048974	25049274	.	-	0	Parent=Os01t0627500-01
Chr01	irgsp1_rep	CDS	25048111	25048331	.	-	2	Parent=Os01t0627500-01
Chr01	irgsp1_rep	CDS	25047772	25048016	.	-	0	Parent=Os01t0627500-01
Chr01	irgsp1_rep	CDS	25046745	25047123	.	-	1	Parent=Os01t0627500-01
Chr01	irgsp1_rep	CDS	25045911	25046336	.	-	0	Parent=Os01t0627500-01
Chr01	irgsp1_rep	three_prime_UTR	25045721	25045910	.	-	.	Parent=Os01t0627500-01
Chr01	irgsp1_rep	mRNA	25045913	25049352	.	+	.	ID=Os01t0627550-00;Name=Os01t0627550-00;Locus_id=Os01g0627550;Note=Hypothetical protein.;Transcript_evidence=tplb0021h11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0627550-00
Chr01	irgsp1_rep	five_prime_UTR	25045913	25046341	.	+	.	Parent=Os01t0627550-00
Chr01	irgsp1_rep	five_prime_UTR	25046754	25047148	.	+	.	Parent=Os01t0627550-00
Chr01	irgsp1_rep	five_prime_UTR	25047802	25047992	.	+	.	Parent=Os01t0627550-00
Chr01	irgsp1_rep	five_prime_UTR	25048093	25048315	.	+	.	Parent=Os01t0627550-00
Chr01	irgsp1_rep	five_prime_UTR	25048960	25049017	.	+	.	Parent=Os01t0627550-00
Chr01	irgsp1_rep	CDS	25049018	25049352	.	+	0	Parent=Os01t0627550-00
Chr01	irgsp1_rep	mRNA	25055850	25058085	.	-	.	ID=Os01t0627600-01;Name=Os01t0627600-01;Locus_id=Os01g0627600;CGSNL Gene Symbol=CYP72A19;CGSNL Gene Name=CYTOCHROME P450 72A19;Oryzabase Gene Symbol Synonym(s)=OsCYP72A19;Oryzabase Gene Name Synonym(s)=CytoChrome P450 72A19;Note=Similar to CytoChrome P450 monooxygenase.;Transcript_evidence=AK101667 (DDBJ%2C Best hit);ORF_evidence=Q3C1U0 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);NIAS_FLcDNA=J033058A07;Oryzabase=21841;TENOR=Os01t0627600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	25057471	25058085	.	-	0	Parent=Os01t0627600-01
Chr01	irgsp1_rep	CDS	25057109	25057353	.	-	0	Parent=Os01t0627600-01
Chr01	irgsp1_rep	CDS	25056548	25056931	.	-	1	Parent=Os01t0627600-01
Chr01	irgsp1_rep	CDS	25056411	25056414	.	-	1	Parent=Os01t0627600-01
Chr01	irgsp1_rep	three_prime_UTR	25055850	25056410	.	-	.	Parent=Os01t0627600-01
Chr01	irgsp1_rep	mRNA	25056093	25058195	.	+	.	ID=Os01t0627701-01;Name=Os01t0627701-01;Locus_id=Os01g0627701;Note=Hypothetical protein.;Transcript_evidence=AK241873 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065218D08;TENOR=Os01t0627701-01;KEGG=Os01t0627701-01
Chr01	irgsp1_rep	five_prime_UTR	25056093	25057485	.	+	.	Parent=Os01t0627701-01
Chr01	irgsp1_rep	CDS	25057486	25058001	.	+	0	Parent=Os01t0627701-01
Chr01	irgsp1_rep	three_prime_UTR	25058002	25058195	.	+	.	Parent=Os01t0627701-01
Chr01	irgsp1_rep	mRNA	25060764	25063562	.	+	.	ID=Os01t0627800-01;Name=Os01t0627800-01;Locus_id=Os01g0627800;Note=Similar to CytoChrome P450 monooxygenase CYP72A5 (Fragment).;Transcript_evidence=AK101750 (DDBJ%2C Best hit);ORF_evidence=Q3C1U0 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J033063B21;Expression=AK101750;TENOR=Os01t0627800-01;KEGG=Os01t0627800-01
Chr01	irgsp1_rep	five_prime_UTR	25060764	25060843	.	+	.	Parent=Os01t0627800-01
Chr01	irgsp1_rep	CDS	25060844	25061174	.	+	0	Parent=Os01t0627800-01
Chr01	irgsp1_rep	CDS	25061675	25061895	.	+	2	Parent=Os01t0627800-01
Chr01	irgsp1_rep	CDS	25062002	25062249	.	+	0	Parent=Os01t0627800-01
Chr01	irgsp1_rep	CDS	25062370	25062744	.	+	1	Parent=Os01t0627800-01
Chr01	irgsp1_rep	CDS	25062856	25063285	.	+	1	Parent=Os01t0627800-01
Chr01	irgsp1_rep	three_prime_UTR	25063286	25063562	.	+	.	Parent=Os01t0627800-01
Chr01	irgsp1_rep	mRNA	25066171	25068280	.	+	.	ID=Os01t0627900-01;Name=Os01t0627900-01;Locus_id=Os01g0627900;Note=Similar to CytoChrome P450.;Transcript_evidence=AK063764 (DDBJ%2C Best hit);ORF_evidence=Q8S9F0 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);NIAS_FLcDNA=001-121-B03;Expression=AK063764;TENOR=Os01t0627900-01;KEGG=Os01t0627900-01
Chr01	irgsp1_rep	five_prime_UTR	25066171	25066252	.	+	.	Parent=Os01t0627900-01
Chr01	irgsp1_rep	CDS	25066253	25066822	.	+	0	Parent=Os01t0627900-01
Chr01	irgsp1_rep	three_prime_UTR	25066823	25068280	.	+	.	Parent=Os01t0627900-01
Chr01	irgsp1_rep	mRNA	25066175	25068167	.	-	.	ID=Os01t0627916-00;Name=Os01t0627916-00;Locus_id=Os01g0627916;Oryzabase Gene Name Synonym(s)=Hypothetical protein;Note=Hypothetical protein.;Transcript_evidence=tplb0021h11 (Wheat FLcDNA);ORF_evidence=longestORF;Oryzabase=23372;TENOR=Os01t0627916-00
Chr01	irgsp1_rep	five_prime_UTR	25067727	25068167	.	-	.	Parent=Os01t0627916-00
Chr01	irgsp1_rep	five_prime_UTR	25067266	25067620	.	-	.	Parent=Os01t0627916-00
Chr01	irgsp1_rep	five_prime_UTR	25067017	25067147	.	-	.	Parent=Os01t0627916-00
Chr01	irgsp1_rep	CDS	25066882	25067016	.	-	0	Parent=Os01t0627916-00
Chr01	irgsp1_rep	CDS	25066175	25066777	.	-	0	Parent=Os01t0627916-00
Chr01	irgsp1_rep	mRNA	25070716	25072692	.	+	.	ID=Os01t0627933-00;Name=Os01t0627933-00;Locus_id=Os01g0627933;Note=Similar to CytoChrome P450.;Transcript_evidence=AY072296 (DDBJ);ORF_evidence=Q2V066 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);TENOR=Os01t0627933-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	25070716	25071644	.	+	0	Parent=Os01t0627933-00
Chr01	irgsp1_rep	CDS	25071785	25072173	.	+	1	Parent=Os01t0627933-00
Chr01	irgsp1_rep	CDS	25072280	25072350	.	+	2	Parent=Os01t0627933-00
Chr01	irgsp1_rep	three_prime_UTR	25072351	25072692	.	+	.	Parent=Os01t0627933-00
Chr01	irgsp1_rep	mRNA	25076430	25078374	.	-	.	ID=Os01t0627967-00;Name=Os01t0627967-00;Locus_id=Os01g0627967;Note=Hypothetical protein.;Transcript_evidence=tplb0037h21 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0627967-00
Chr01	irgsp1_rep	five_prime_UTR	25077952	25078374	.	-	.	Parent=Os01t0627967-00
Chr01	irgsp1_rep	five_prime_UTR	25077543	25077838	.	-	.	Parent=Os01t0627967-00
Chr01	irgsp1_rep	CDS	25077410	25077542	.	-	0	Parent=Os01t0627967-00
Chr01	irgsp1_rep	CDS	25077061	25077265	.	-	2	Parent=Os01t0627967-00
Chr01	irgsp1_rep	CDS	25076460	25076967	.	-	1	Parent=Os01t0627967-00
Chr01	irgsp1_rep	three_prime_UTR	25076430	25076459	.	-	.	Parent=Os01t0627967-00
Chr01	irgsp1_rep	mRNA	25076611	25077382	.	+	.	ID=Os01t0628000-01;Name=Os01t0628000-01;Locus_id=Os01g0628000;Oryzabase Gene Symbol Synonym(s)=CYP72A1%2C OsCYP72A1;Oryzabase Gene Name Synonym(s)=cytoChrome P450 72A1;Note=CytoChrome P450 family protein.;Transcript_evidence=AK109274 (DDBJ%2C Best hit);ORF_evidence=Q8S9F0 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);NIAS_FLcDNA=002-188-A10;Oryzabase=21712;Expression=AK109274;TENOR=Os01t0628000-01;KEGG=Os01t0628000-01
Chr01	irgsp1_rep	five_prime_UTR	25076611	25076612	.	+	.	Parent=Os01t0628000-01
Chr01	irgsp1_rep	CDS	25076613	25077062	.	+	0	Parent=Os01t0628000-01
Chr01	irgsp1_rep	three_prime_UTR	25077063	25077382	.	+	.	Parent=Os01t0628000-01
Chr01	irgsp1_rep	mRNA	25114083	25118356	.	+	.	ID=Os01t0628700-01;Name=Os01t0628700-01;Locus_id=Os01g0628700;Note=CytoChrome P450.;Transcript_evidence=AK243026 (DDBJ%2C Best hit);ORF_evidence=B6SPG9 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J100002I07;TENOR=Os01t0628700-01;KEGG=Os01t0628700-01
Chr01	irgsp1_rep	five_prime_UTR	25114083	25114244	.	+	.	Parent=Os01t0628700-01
Chr01	irgsp1_rep	CDS	25114245	25114551	.	+	0	Parent=Os01t0628700-01
Chr01	irgsp1_rep	CDS	25116458	25116678	.	+	2	Parent=Os01t0628700-01
Chr01	irgsp1_rep	CDS	25116769	25117016	.	+	0	Parent=Os01t0628700-01
Chr01	irgsp1_rep	CDS	25117163	25117553	.	+	1	Parent=Os01t0628700-01
Chr01	irgsp1_rep	CDS	25117640	25118068	.	+	0	Parent=Os01t0628700-01
Chr01	irgsp1_rep	three_prime_UTR	25118069	25118356	.	+	.	Parent=Os01t0628700-01
Chr01	irgsp1_rep	mRNA	25119734	25121919	.	+	.	ID=Os01t0628900-01;Name=Os01t0628900-01;Locus_id=Os01g0628900;Note=CytoChrome P450 family protein.;Transcript_evidence=AK060213 (DDBJ%2C Best hit);ORF_evidence=B6SU71 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=001-002-C03;Expression=AK060213;TENOR=Os01t0628900-01;KEGG=Os01t0628900-01
Chr01	irgsp1_rep	five_prime_UTR	25119734	25119752	.	+	.	Parent=Os01t0628900-01
Chr01	irgsp1_rep	CDS	25119753	25120059	.	+	0	Parent=Os01t0628900-01
Chr01	irgsp1_rep	CDS	25120152	25120375	.	+	2	Parent=Os01t0628900-01
Chr01	irgsp1_rep	CDS	25120534	25120778	.	+	0	Parent=Os01t0628900-01
Chr01	irgsp1_rep	CDS	25120887	25121271	.	+	1	Parent=Os01t0628900-01
Chr01	irgsp1_rep	CDS	25121348	25121773	.	+	0	Parent=Os01t0628900-01
Chr01	irgsp1_rep	three_prime_UTR	25121774	25121919	.	+	.	Parent=Os01t0628900-01
Chr01	irgsp1_rep	mRNA	25119789	25121788	.	-	.	ID=Os01t0628950-00;Name=Os01t0628950-00;Locus_id=Os01g0628950;Note=Hypothetical protein.;Transcript_evidence=tplb0021h11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0628950-00
Chr01	irgsp1_rep	five_prime_UTR	25121662	25121788	.	-	.	Parent=Os01t0628950-00
Chr01	irgsp1_rep	CDS	25121346	25121661	.	-	0	Parent=Os01t0628950-00
Chr01	irgsp1_rep	CDS	25121150	25121262	.	-	2	Parent=Os01t0628950-00
Chr01	irgsp1_rep	three_prime_UTR	25120899	25121149	.	-	.	Parent=Os01t0628950-00
Chr01	irgsp1_rep	three_prime_UTR	25120536	25120786	.	-	.	Parent=Os01t0628950-00
Chr01	irgsp1_rep	three_prime_UTR	25120168	25120377	.	-	.	Parent=Os01t0628950-00
Chr01	irgsp1_rep	three_prime_UTR	25119789	25120077	.	-	.	Parent=Os01t0628950-00
Chr01	irgsp1_rep	mRNA	25122508	25127466	.	+	.	ID=Os01t0629000-00;Name=Os01t0629000-00;Locus_id=Os01g0629000;Note=Hypothetical conserved gene.;Transcript_evidence=CT834774 (DDBJ%2C Best hit);ORF_evidence=B9EY66 (UniProt);TENOR=Os01t0629000-00;KEGG=Os01t0629000-00
Chr01	irgsp1_rep	five_prime_UTR	25122508	25122586	.	+	.	Parent=Os01t0629000-00
Chr01	irgsp1_rep	five_prime_UTR	25125052	25125082	.	+	.	Parent=Os01t0629000-00
Chr01	irgsp1_rep	CDS	25125083	25125124	.	+	0	Parent=Os01t0629000-00
Chr01	irgsp1_rep	CDS	25125135	25125272	.	+	0	Parent=Os01t0629000-00
Chr01	irgsp1_rep	three_prime_UTR	25125273	25125283	.	+	.	Parent=Os01t0629000-00
Chr01	irgsp1_rep	three_prime_UTR	25126509	25126544	.	+	.	Parent=Os01t0629000-00
Chr01	irgsp1_rep	three_prime_UTR	25127251	25127466	.	+	.	Parent=Os01t0629000-00
Chr01	irgsp1_rep	mRNA	25132887	25138116	.	+	.	ID=Os01t0629400-01;Name=Os01t0629400-01;Locus_id=Os01g0629400;Note=NLI interacting factor domain containing protein.;Transcript_evidence=AK102504 (DDBJ%2C Best hit);ORF_evidence=A6N1L0 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: phosphatase activity (GO:0016791);InterPro=NLI interacting factor (IPR004274),Dullard phosphatase domain%2C eukaryotic (IPR011948),HAD-like domain (IPR023214);NIAS_FLcDNA=J033095E13;Expression=AK102504;TENOR=Os01t0629400-01;KEGG=Os01t0629400-01
Chr01	irgsp1_rep	five_prime_UTR	25132887	25133030	.	+	.	Parent=Os01t0629400-01
Chr01	irgsp1_rep	five_prime_UTR	25133756	25133967	.	+	.	Parent=Os01t0629400-01
Chr01	irgsp1_rep	five_prime_UTR	25134813	25134943	.	+	.	Parent=Os01t0629400-01
Chr01	irgsp1_rep	five_prime_UTR	25135822	25135930	.	+	.	Parent=Os01t0629400-01
Chr01	irgsp1_rep	five_prime_UTR	25136069	25137054	.	+	.	Parent=Os01t0629400-01
Chr01	irgsp1_rep	CDS	25137055	25137420	.	+	0	Parent=Os01t0629400-01
Chr01	irgsp1_rep	CDS	25137699	25137866	.	+	0	Parent=Os01t0629400-01
Chr01	irgsp1_rep	three_prime_UTR	25137867	25138116	.	+	.	Parent=Os01t0629400-01
Chr01	irgsp1_rep	mRNA	25137329	25138118	.	+	.	ID=Os01t0629400-02;Name=Os01t0629400-02;Locus_id=Os01g0629400;Note=Similar to Ctd-phosphatase-like protein (Fragment).;Transcript_evidence=AK063853 (DDBJ%2C Best hit);ORF_evidence=A6N1L0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=NLI interacting factor (IPR004274),HAD-like domain (IPR023214);NIAS_FLcDNA=001-122-D02;Expression=AK063853;TENOR=Os01t0629400-02;KEGG=Os01t0629400-02
Chr01	irgsp1_rep	five_prime_UTR	25137329	25137330	.	+	.	Parent=Os01t0629400-02
Chr01	irgsp1_rep	CDS	25137331	25137420	.	+	0	Parent=Os01t0629400-02
Chr01	irgsp1_rep	CDS	25137699	25137866	.	+	0	Parent=Os01t0629400-02
Chr01	irgsp1_rep	three_prime_UTR	25137867	25138118	.	+	.	Parent=Os01t0629400-02
Chr01	irgsp1_rep	mRNA	25140681	25141680	.	+	.	ID=Os01t0629500-00;Name=Os01t0629500-00;Locus_id=Os01g0629500;Note=Conserved hypothetical protein.;Transcript_evidence=AK111352 (DDBJ%2C Secondary hit);ORF_evidence=A2WW51 (UniProt);TENOR=Os01t0629500-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	25140681	25140768	.	+	.	Parent=Os01t0629500-00
Chr01	irgsp1_rep	CDS	25140769	25141004	.	+	0	Parent=Os01t0629500-00
Chr01	irgsp1_rep	CDS	25141020	25141115	.	+	1	Parent=Os01t0629500-00
Chr01	irgsp1_rep	CDS	25141127	25141163	.	+	1	Parent=Os01t0629500-00
Chr01	irgsp1_rep	three_prime_UTR	25141164	25141244	.	+	.	Parent=Os01t0629500-00
Chr01	irgsp1_rep	three_prime_UTR	25141483	25141680	.	+	.	Parent=Os01t0629500-00
Chr01	irgsp1_rep	mRNA	25144502	25145949	.	+	.	ID=Os01t0629600-01;Name=Os01t0629600-01;Locus_id=Os01g0629600;CGSNL Gene Symbol=SCP4;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 4;Oryzabase Gene Symbol Synonym(s)=OsSCP4;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 4;Note=Peptidase S10%2C serine carboxypeptidase family protein.;Transcript_evidence=AK071156 (DDBJ%2C Best hit);ORF_evidence=A2WSV5 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=J023078D08;Oryzabase=19189;Expression=AK071156;TENOR=Os01t0629600-01;KEGG=Os01t0629600-01
Chr01	irgsp1_rep	five_prime_UTR	25144502	25144540	.	+	.	Parent=Os01t0629600-01
Chr01	irgsp1_rep	CDS	25144541	25145899	.	+	0	Parent=Os01t0629600-01
Chr01	irgsp1_rep	three_prime_UTR	25145900	25145949	.	+	.	Parent=Os01t0629600-01
Chr01	irgsp1_rep	mRNA	25146732	25147447	.	-	.	ID=Os01t0629750-00;Name=Os01t0629750-00;Locus_id=Os01g0629750;Note=Conserved hypothetical protein.;Transcript_evidence=CT837542 (DDBJ%2C Best hit);ORF_evidence=NP_001066412.1 (RefSeq);TENOR=Os01t0629750-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	25147195	25147447	.	-	.	Parent=Os01t0629750-00
Chr01	irgsp1_rep	CDS	25147135	25147194	.	-	0	Parent=Os01t0629750-00
Chr01	irgsp1_rep	CDS	25146766	25147128	.	-	0	Parent=Os01t0629750-00
Chr01	irgsp1_rep	three_prime_UTR	25146732	25146765	.	-	.	Parent=Os01t0629750-00
Chr01	irgsp1_rep	mRNA	25152108	25158338	.	-	.	ID=Os01t0629900-01;Name=Os01t0629900-01;Locus_id=Os01g0629900;Oryzabase Gene Symbol Synonym(s)=OsMPK20-1;Oryzabase Gene Name Synonym(s)=MAP kinase 20-1;Note=Similar to Blast and wounding induced mitogen-activated protein kinase.;Transcript_evidence=AK065930 (DDBJ%2C Best hit);ORF_evidence=Q5ZCI1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: MAP kinase activity (GO:0004707),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),MAP kinase%2C conserved site (IPR003527),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013045H01;Oryzabase=10679;Expression=AK065930;TENOR=Os01t0629900-01;KEGG=Os01t0629900-01
Chr01	irgsp1_rep	five_prime_UTR	25157938	25158338	.	-	.	Parent=Os01t0629900-01
Chr01	irgsp1_rep	CDS	25157914	25157937	.	-	0	Parent=Os01t0629900-01
Chr01	irgsp1_rep	CDS	25156288	25156696	.	-	0	Parent=Os01t0629900-01
Chr01	irgsp1_rep	CDS	25155542	25155669	.	-	2	Parent=Os01t0629900-01
Chr01	irgsp1_rep	CDS	25155375	25155434	.	-	0	Parent=Os01t0629900-01
Chr01	irgsp1_rep	CDS	25154726	25154875	.	-	0	Parent=Os01t0629900-01
Chr01	irgsp1_rep	CDS	25154476	25154631	.	-	0	Parent=Os01t0629900-01
Chr01	irgsp1_rep	CDS	25154153	25154364	.	-	0	Parent=Os01t0629900-01
Chr01	irgsp1_rep	CDS	25153900	25153998	.	-	1	Parent=Os01t0629900-01
Chr01	irgsp1_rep	CDS	25153141	25153304	.	-	1	Parent=Os01t0629900-01
Chr01	irgsp1_rep	CDS	25152622	25153055	.	-	2	Parent=Os01t0629900-01
Chr01	irgsp1_rep	three_prime_UTR	25152108	25152621	.	-	.	Parent=Os01t0629900-01
Chr01	irgsp1_rep	mRNA	25152119	25154627	.	-	.	ID=Os01t0629900-02;Name=Os01t0629900-02;Locus_id=Os01g0629900;Oryzabase Gene Symbol Synonym(s)=OsMPK20-1;Oryzabase Gene Name Synonym(s)=MAP kinase 20-1;Note=Similar to Mitogen-activated protein kinase 10.;Transcript_evidence=AK073989 (DDBJ%2C Best hit);ORF_evidence=Q5ZCI1 (UniProt);GO=Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J033071J24;Oryzabase=10679;Expression=AK073989;TENOR=Os01t0629900-02;KEGG=Os01t0629900-02
Chr01	irgsp1_rep	five_prime_UTR	25154626	25154627	.	-	.	Parent=Os01t0629900-02
Chr01	irgsp1_rep	CDS	25154476	25154625	.	-	0	Parent=Os01t0629900-02
Chr01	irgsp1_rep	CDS	25154153	25154364	.	-	0	Parent=Os01t0629900-02
Chr01	irgsp1_rep	CDS	25153900	25153998	.	-	1	Parent=Os01t0629900-02
Chr01	irgsp1_rep	CDS	25153141	25153304	.	-	1	Parent=Os01t0629900-02
Chr01	irgsp1_rep	CDS	25152622	25153055	.	-	2	Parent=Os01t0629900-02
Chr01	irgsp1_rep	three_prime_UTR	25152119	25152621	.	-	.	Parent=Os01t0629900-02
Chr01	irgsp1_rep	mRNA	25152141	25154509	.	-	.	ID=Os01t0629900-03;Name=Os01t0629900-03;Locus_id=Os01g0629900;Oryzabase Gene Symbol Synonym(s)=OsMPK20-1;Oryzabase Gene Name Synonym(s)=MAP kinase 20-1;Note=Similar to Mitogen-activated protein kinase 10.;Transcript_evidence=AK062211 (DDBJ%2C Best hit);ORF_evidence=Q5ZCI1 (UniProt);GO=Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009);NIAS_FLcDNA=001-047-A05;Oryzabase=10679;Expression=AK062211;TENOR=Os01t0629900-03;KEGG=Os01t0629900-03
Chr01	irgsp1_rep	five_prime_UTR	25154509	25154509	.	-	.	Parent=Os01t0629900-03
Chr01	irgsp1_rep	CDS	25154476	25154508	.	-	0	Parent=Os01t0629900-03
Chr01	irgsp1_rep	CDS	25154153	25154364	.	-	0	Parent=Os01t0629900-03
Chr01	irgsp1_rep	CDS	25153900	25153998	.	-	1	Parent=Os01t0629900-03
Chr01	irgsp1_rep	CDS	25153141	25153304	.	-	1	Parent=Os01t0629900-03
Chr01	irgsp1_rep	CDS	25152622	25153055	.	-	2	Parent=Os01t0629900-03
Chr01	irgsp1_rep	three_prime_UTR	25152141	25152621	.	-	.	Parent=Os01t0629900-03
Chr01	irgsp1_rep	mRNA	25152143	25153267	.	-	.	ID=Os01t0629900-04;Name=Os01t0629900-04;Locus_id=Os01g0629900;Oryzabase Gene Symbol Synonym(s)=OsMPK20-1;Oryzabase Gene Name Synonym(s)=MAP kinase 20-1;Note=Similar to Mitogen-activated protein kinase 10.;Transcript_evidence=AK073791 (DDBJ%2C Best hit);ORF_evidence=Q5ZCI1 (UniProt);NIAS_FLcDNA=J033070B18;Oryzabase=10679;Expression=AK073791;TENOR=Os01t0629900-04;KEGG=Os01t0629900-04
Chr01	irgsp1_rep	CDS	25153141	25153267	.	-	0	Parent=Os01t0629900-04
Chr01	irgsp1_rep	CDS	25152622	25153055	.	-	2	Parent=Os01t0629900-04
Chr01	irgsp1_rep	three_prime_UTR	25152143	25152621	.	-	.	Parent=Os01t0629900-04
Chr01	irgsp1_rep	mRNA	25153899	25156698	.	+	.	ID=Os01t0630000-00;Name=Os01t0630000-00;Locus_id=Os01g0630000;Note=Hypothetical protein.;Transcript_evidence=tplb0038e20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0630000-00
Chr01	irgsp1_rep	five_prime_UTR	25153899	25153998	.	+	.	Parent=Os01t0630000-00
Chr01	irgsp1_rep	five_prime_UTR	25154153	25154363	.	+	.	Parent=Os01t0630000-00
Chr01	irgsp1_rep	five_prime_UTR	25154475	25154593	.	+	.	Parent=Os01t0630000-00
Chr01	irgsp1_rep	CDS	25154594	25154619	.	+	0	Parent=Os01t0630000-00
Chr01	irgsp1_rep	CDS	25154712	25154885	.	+	1	Parent=Os01t0630000-00
Chr01	irgsp1_rep	CDS	25155385	25155420	.	+	1	Parent=Os01t0630000-00
Chr01	irgsp1_rep	CDS	25155524	25155655	.	+	1	Parent=Os01t0630000-00
Chr01	irgsp1_rep	CDS	25156274	25156295	.	+	1	Parent=Os01t0630000-00
Chr01	irgsp1_rep	three_prime_UTR	25156296	25156698	.	+	.	Parent=Os01t0630000-00
Chr01	irgsp1_rep	mRNA	25187267	25189478	.	-	.	ID=Os01t0630101-00;Name=Os01t0630101-00;Locus_id=Os01g0630101;Note=Hypothetical protein.;Transcript_evidence=tplb0040j04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0630101-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	25188351	25189478	.	-	.	Parent=Os01t0630101-00
Chr01	irgsp1_rep	CDS	25188117	25188350	.	-	0	Parent=Os01t0630101-00
Chr01	irgsp1_rep	three_prime_UTR	25187267	25188116	.	-	.	Parent=Os01t0630101-00
Chr01	irgsp1_rep	mRNA	25187250	25189517	.	+	.	ID=Os01t0630200-00;Name=Os01t0630200-00;Locus_id=Os01g0630200;Note=Similar to oligopeptide transporter OPT family.;Transcript_evidence=ab initio prediction;ORF_evidence=XP_002313213.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085);InterPro=Tetrapeptide transporter%2C OPT1/isp4 (IPR004648),Oligopeptide transporter OPT superfamily (IPR004813);TENOR=Os01t0630200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	25187250	25189517	.	+	0	Parent=Os01t0630200-00
Chr01	irgsp1_rep	mRNA	25190735	25191743	.	-	.	ID=Os01t0630300-01;Name=Os01t0630300-01;Locus_id=Os01g0630300;Oryzabase Gene Symbol Synonym(s)=OsbHLH169%2C bHLH169;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 169;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=AK241332 (DDBJ%2C Best hit);ORF_evidence=NP_001172473.1 (RefSeq);NIAS_FLcDNA=J065144E11;Oryzabase=22845;TENOR=Os01t0630300-01;KEGG=Os01t0630300-01
Chr01	irgsp1_rep	five_prime_UTR	25191660	25191743	.	-	.	Parent=Os01t0630300-01
Chr01	irgsp1_rep	CDS	25191135	25191659	.	-	0	Parent=Os01t0630300-01
Chr01	irgsp1_rep	three_prime_UTR	25190735	25191134	.	-	.	Parent=Os01t0630300-01
Chr01	irgsp1_rep	mRNA	25219700	25221448	.	+	.	ID=Os01t0630900-00;Name=Os01t0630900-00;Locus_id=Os01g0630900;Note=Hypothetical conserved gene.;Transcript_evidence=AK059722 (DDBJ%2C Secondary hit);ORF_evidence=Q75IQ3 (UniProt);InterPro=Nucleic acid-binding%2C OB-fold (IPR012340),Replication factor A%2C C-terminal (IPR013955),Nucleic acid-binding%2C OB-fold-like (IPR016027);Expression=AK059722;TENOR=Os01t0630900-00;KEGG=Os01t0630900-00
Chr01	irgsp1_rep	CDS	25219700	25219759	.	+	0	Parent=Os01t0630900-00
Chr01	irgsp1_rep	CDS	25219854	25220005	.	+	0	Parent=Os01t0630900-00
Chr01	irgsp1_rep	CDS	25220125	25220560	.	+	1	Parent=Os01t0630900-00
Chr01	irgsp1_rep	CDS	25220650	25220790	.	+	0	Parent=Os01t0630900-00
Chr01	irgsp1_rep	three_prime_UTR	25220791	25221020	.	+	.	Parent=Os01t0630900-00
Chr01	irgsp1_rep	three_prime_UTR	25221104	25221448	.	+	.	Parent=Os01t0630900-00
Chr01	irgsp1_rep	mRNA	25226874	25233773	.	+	.	ID=Os01t0631100-01;Name=Os01t0631100-01;Locus_id=Os01g0631100;Note=Cas1p-like family protein.;Transcript_evidence=AK103098 (DDBJ%2C Best hit);ORF_evidence=NP_001031478.1 (RefSeq);InterPro=Cas1p-like (IPR012419);NIAS_FLcDNA=J033118M16;Expression=AK103098;TENOR=Os01t0631100-01;KEGG=Os01t0631100-01
Chr01	irgsp1_rep	five_prime_UTR	25226874	25227261	.	+	.	Parent=Os01t0631100-01
Chr01	irgsp1_rep	CDS	25227262	25227294	.	+	0	Parent=Os01t0631100-01
Chr01	irgsp1_rep	CDS	25228174	25228262	.	+	0	Parent=Os01t0631100-01
Chr01	irgsp1_rep	CDS	25228385	25228513	.	+	1	Parent=Os01t0631100-01
Chr01	irgsp1_rep	CDS	25228599	25228655	.	+	1	Parent=Os01t0631100-01
Chr01	irgsp1_rep	CDS	25228733	25228805	.	+	1	Parent=Os01t0631100-01
Chr01	irgsp1_rep	CDS	25229398	25229556	.	+	0	Parent=Os01t0631100-01
Chr01	irgsp1_rep	CDS	25230644	25230793	.	+	0	Parent=Os01t0631100-01
Chr01	irgsp1_rep	CDS	25230902	25231157	.	+	0	Parent=Os01t0631100-01
Chr01	irgsp1_rep	CDS	25231247	25231368	.	+	2	Parent=Os01t0631100-01
Chr01	irgsp1_rep	CDS	25231542	25231628	.	+	0	Parent=Os01t0631100-01
Chr01	irgsp1_rep	CDS	25231731	25231819	.	+	0	Parent=Os01t0631100-01
Chr01	irgsp1_rep	CDS	25231897	25231959	.	+	1	Parent=Os01t0631100-01
Chr01	irgsp1_rep	CDS	25232057	25232113	.	+	1	Parent=Os01t0631100-01
Chr01	irgsp1_rep	CDS	25233051	25233147	.	+	1	Parent=Os01t0631100-01
Chr01	irgsp1_rep	CDS	25233237	25233395	.	+	0	Parent=Os01t0631100-01
Chr01	irgsp1_rep	three_prime_UTR	25233396	25233773	.	+	.	Parent=Os01t0631100-01
Chr01	irgsp1_rep	mRNA	25227142	25233448	.	+	.	ID=Os01t0631100-02;Name=Os01t0631100-02;Locus_id=Os01g0631100;Note=Similar to predicted protein.;Transcript_evidence=AK120154 (DDBJ%2C Best hit);ORF_evidence=NP_001031478.1 (RefSeq);NIAS_FLcDNA=J013030A13;Expression=AK120154;TENOR=Os01t0631100-02;KEGG=Os01t0631100-02
Chr01	irgsp1_rep	five_prime_UTR	25227142	25228143	.	+	.	Parent=Os01t0631100-02
Chr01	irgsp1_rep	CDS	25228144	25228262	.	+	0	Parent=Os01t0631100-02
Chr01	irgsp1_rep	CDS	25228385	25228513	.	+	1	Parent=Os01t0631100-02
Chr01	irgsp1_rep	CDS	25228599	25228655	.	+	1	Parent=Os01t0631100-02
Chr01	irgsp1_rep	CDS	25228733	25228829	.	+	1	Parent=Os01t0631100-02
Chr01	irgsp1_rep	three_prime_UTR	25228830	25230793	.	+	.	Parent=Os01t0631100-02
Chr01	irgsp1_rep	three_prime_UTR	25230902	25231157	.	+	.	Parent=Os01t0631100-02
Chr01	irgsp1_rep	three_prime_UTR	25231247	25231368	.	+	.	Parent=Os01t0631100-02
Chr01	irgsp1_rep	three_prime_UTR	25231542	25231628	.	+	.	Parent=Os01t0631100-02
Chr01	irgsp1_rep	three_prime_UTR	25231731	25231819	.	+	.	Parent=Os01t0631100-02
Chr01	irgsp1_rep	three_prime_UTR	25231897	25231959	.	+	.	Parent=Os01t0631100-02
Chr01	irgsp1_rep	three_prime_UTR	25232057	25232113	.	+	.	Parent=Os01t0631100-02
Chr01	irgsp1_rep	three_prime_UTR	25233051	25233147	.	+	.	Parent=Os01t0631100-02
Chr01	irgsp1_rep	three_prime_UTR	25233237	25233448	.	+	.	Parent=Os01t0631100-02
Chr01	irgsp1_rep	mRNA	25234709	25238165	.	+	.	ID=Os01t0631200-01;Name=Os01t0631200-01;Locus_id=Os01g0631200;Note=Similar to siroheme uroporphyrinogen methyltransferase1.;Transcript_evidence=AK072497 (DDBJ%2C Best hit);ORF_evidence=NP_001105724.1 (RefSeq);GO=Biological Process: porphyrin-containing compound biosynthetic process (GO:0006779),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: precorrin-2 dehydrogenase activity (GO:0043115);InterPro=Tetrapyrrole methylase (IPR000878),Uroporphiryn-III C-methyltransferase%2C conserved site (IPR003043),Uroporphyrin-III C-methyltransferase%2C C-terminal (IPR006366),Tetrapyrrole methylase%2C subdomain 2 (IPR014776),Tetrapyrrole methylase%2C subdomain 1 (IPR014777);NIAS_FLcDNA=J023125G17;TENOR=Os01t0631200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	25234709	25234889	.	+	0	Parent=Os01t0631200-01
Chr01	irgsp1_rep	CDS	25235410	25235459	.	+	2	Parent=Os01t0631200-01
Chr01	irgsp1_rep	CDS	25235573	25235650	.	+	0	Parent=Os01t0631200-01
Chr01	irgsp1_rep	CDS	25236479	25236548	.	+	0	Parent=Os01t0631200-01
Chr01	irgsp1_rep	CDS	25236632	25236701	.	+	2	Parent=Os01t0631200-01
Chr01	irgsp1_rep	CDS	25237151	25237358	.	+	1	Parent=Os01t0631200-01
Chr01	irgsp1_rep	CDS	25237435	25237605	.	+	0	Parent=Os01t0631200-01
Chr01	irgsp1_rep	three_prime_UTR	25237606	25238165	.	+	.	Parent=Os01t0631200-01
Chr01	irgsp1_rep	mRNA	25257001	25263141	.	+	.	ID=Os01t0631400-01;Name=Os01t0631400-01;Locus_id=Os01g0631400;Oryzabase Gene Symbol Synonym(s)=GPAT;Oryzabase Gene Name Synonym(s)=glycerol-3-phosphate acyltransferase;Note=Six-hairpin glycosidase domain containing protein.;Transcript_evidence=AK100804 (DDBJ%2C Best hit);ORF_evidence=B8ACA2 (UniProt);NIAS_FLcDNA=J023121K22;Oryzabase=21980;Expression=AK100804;TENOR=Os01t0631400-01;KEGG=Os01t0631400-01
Chr01	irgsp1_rep	five_prime_UTR	25257001	25257251	.	+	.	Parent=Os01t0631400-01
Chr01	irgsp1_rep	CDS	25257252	25258025	.	+	0	Parent=Os01t0631400-01
Chr01	irgsp1_rep	CDS	25262926	25263141	.	+	0	Parent=Os01t0631400-01
Chr01	irgsp1_rep	mRNA	25271701	25273506	.	+	.	ID=Os01t0631500-01;Name=Os01t0631500-01;Locus_id=Os01g0631500;Note=Similar to Beta-1%2C3-glucanase-like protein.;Transcript_evidence=AK063308 (DDBJ%2C Best hit);ORF_evidence=B6TM89 (UniProt);InterPro=X8 (IPR012946);NIAS_FLcDNA=001-113-F12;Expression=AK063308;TENOR=Os01t0631500-01;KEGG=Os01t0631500-01
Chr01	irgsp1_rep	five_prime_UTR	25271701	25271773	.	+	.	Parent=Os01t0631500-01
Chr01	irgsp1_rep	CDS	25271774	25271819	.	+	0	Parent=Os01t0631500-01
Chr01	irgsp1_rep	CDS	25272147	25272602	.	+	2	Parent=Os01t0631500-01
Chr01	irgsp1_rep	CDS	25272691	25272721	.	+	2	Parent=Os01t0631500-01
Chr01	irgsp1_rep	CDS	25272838	25273144	.	+	1	Parent=Os01t0631500-01
Chr01	irgsp1_rep	three_prime_UTR	25273145	25273506	.	+	.	Parent=Os01t0631500-01
Chr01	irgsp1_rep	mRNA	25282067	25286614	.	+	.	ID=Os01t0631700-01;Name=Os01t0631700-01;Locus_id=Os01g0631700;Note=Similar to Ser Thr specific protein kinase-like protein.;Transcript_evidence=AK065494 (DDBJ%2C Best hit);ORF_evidence=Q1EPK4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013025I12;Oryzabase=20199;Expression=AK065494;TENOR=Os01t0631700-01;KEGG=Os01t0631700-01
Chr01	irgsp1_rep	five_prime_UTR	25282067	25282097	.	+	.	Parent=Os01t0631700-01
Chr01	irgsp1_rep	five_prime_UTR	25282256	25282303	.	+	.	Parent=Os01t0631700-01
Chr01	irgsp1_rep	five_prime_UTR	25282631	25282734	.	+	.	Parent=Os01t0631700-01
Chr01	irgsp1_rep	CDS	25282735	25283393	.	+	0	Parent=Os01t0631700-01
Chr01	irgsp1_rep	CDS	25283487	25283591	.	+	1	Parent=Os01t0631700-01
Chr01	irgsp1_rep	CDS	25284838	25284960	.	+	1	Parent=Os01t0631700-01
Chr01	irgsp1_rep	CDS	25285056	25285226	.	+	1	Parent=Os01t0631700-01
Chr01	irgsp1_rep	CDS	25285329	25285458	.	+	1	Parent=Os01t0631700-01
Chr01	irgsp1_rep	CDS	25285686	25285895	.	+	0	Parent=Os01t0631700-01
Chr01	irgsp1_rep	CDS	25285973	25286104	.	+	0	Parent=Os01t0631700-01
Chr01	irgsp1_rep	three_prime_UTR	25286105	25286614	.	+	.	Parent=Os01t0631700-01
Chr01	irgsp1_rep	mRNA	25288392	25289157	.	+	.	ID=Os01t0631800-01;Name=Os01t0631800-01;Locus_id=Os01g0631800;Note=Conserved hypothetical protein.;Transcript_evidence=AK069421 (DDBJ%2C Best hit);ORF_evidence=A2WSX2 (UniProt);NIAS_FLcDNA=J023019C22;Expression=AK069421;TENOR=Os01t0631800-01;KEGG=Os01t0631800-01
Chr01	irgsp1_rep	five_prime_UTR	25288392	25288468	.	+	.	Parent=Os01t0631800-01
Chr01	irgsp1_rep	CDS	25288469	25288777	.	+	0	Parent=Os01t0631800-01
Chr01	irgsp1_rep	three_prime_UTR	25288778	25289157	.	+	.	Parent=Os01t0631800-01
Chr01	irgsp1_rep	mRNA	25291327	25298088	.	+	.	ID=Os01t0631900-00;Name=Os01t0631900-00;Locus_id=Os01g0631900;Note=Similar to aspartic proteinase oryzasin-1.;Transcript_evidence=tplb0003n04 (Wheat FLcDNA);ORF_evidence=NP_001148782.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Biological Process: lipid metabolic process (GO:0006629),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Saposin-like type B%2C 1 (IPR007856),Saposin-like type B%2C 2 (IPR008138),Saposin B (IPR008139),Peptidase aspartic%2C catalytic (IPR009007),Saposin-like (IPR011001),Peptidase aspartic (IPR021109);TENOR=Os01t0631900-00;KEGG=Os01t0631900-00 (EC:3.4.23.40)
Chr01	irgsp1_rep	five_prime_UTR	25291327	25291337	.	+	.	Parent=Os01t0631900-00
Chr01	irgsp1_rep	CDS	25291338	25291856	.	+	0	Parent=Os01t0631900-00
Chr01	irgsp1_rep	CDS	25291967	25292027	.	+	0	Parent=Os01t0631900-00
Chr01	irgsp1_rep	CDS	25292529	25292623	.	+	2	Parent=Os01t0631900-00
Chr01	irgsp1_rep	CDS	25292716	25292828	.	+	0	Parent=Os01t0631900-00
Chr01	irgsp1_rep	CDS	25293369	25293537	.	+	1	Parent=Os01t0631900-00
Chr01	irgsp1_rep	CDS	25293666	25293705	.	+	0	Parent=Os01t0631900-00
Chr01	irgsp1_rep	CDS	25293795	25293859	.	+	2	Parent=Os01t0631900-00
Chr01	irgsp1_rep	CDS	25294039	25294152	.	+	0	Parent=Os01t0631900-00
Chr01	irgsp1_rep	CDS	25294287	25294351	.	+	0	Parent=Os01t0631900-00
Chr01	irgsp1_rep	CDS	25294461	25294614	.	+	1	Parent=Os01t0631900-00
Chr01	irgsp1_rep	CDS	25294687	25294803	.	+	0	Parent=Os01t0631900-00
Chr01	irgsp1_rep	CDS	25296890	25296978	.	+	0	Parent=Os01t0631900-00
Chr01	irgsp1_rep	CDS	25297988	25298072	.	+	1	Parent=Os01t0631900-00
Chr01	irgsp1_rep	three_prime_UTR	25298073	25298088	.	+	.	Parent=Os01t0631900-00
Chr01	irgsp1_rep	mRNA	25300987	25302926	.	-	.	ID=Os01t0632000-01;Name=Os01t0632000-01;Locus_id=Os01g0632000;Note=Conserved hypothetical protein.;Transcript_evidence=AK241576 (DDBJ%2C Best hit);ORF_evidence=NP_001172476.1 (RefSeq);NIAS_FLcDNA=J065180O15;TENOR=Os01t0632000-01;KEGG=Os01t0632000-01
Chr01	irgsp1_rep	five_prime_UTR	25302482	25302926	.	-	.	Parent=Os01t0632000-01
Chr01	irgsp1_rep	CDS	25301681	25302481	.	-	0	Parent=Os01t0632000-01
Chr01	irgsp1_rep	three_prime_UTR	25300987	25301680	.	-	.	Parent=Os01t0632000-01
Chr01	irgsp1_rep	mRNA	25300974	25302931	.	+	.	ID=Os01t0632100-01;Name=Os01t0632100-01;Locus_id=Os01g0632100;Note=Conserved hypothetical protein.;Transcript_evidence=AK287815 (DDBJ%2C Best hit);ORF_evidence=NP_001172475.1 (RefSeq);NIAS_FLcDNA=J065180O15;TENOR=Os01t0632100-01;KEGG=Os01t0632100-01
Chr01	irgsp1_rep	five_prime_UTR	25300974	25301542	.	+	.	Parent=Os01t0632100-01
Chr01	irgsp1_rep	CDS	25301543	25302172	.	+	0	Parent=Os01t0632100-01
Chr01	irgsp1_rep	three_prime_UTR	25302173	25302931	.	+	.	Parent=Os01t0632100-01
Chr01	irgsp1_rep	mRNA	25330851	25338137	.	+	.	ID=Os01t0632700-01;Name=Os01t0632700-01;Locus_id=Os01g0632700;Note=Hypothetical protein.;Transcript_evidence=AK107033 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-121-B06;TENOR=Os01t0632700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	25330851	25331352	.	+	0	Parent=Os01t0632700-01
Chr01	irgsp1_rep	CDS	25333938	25333997	.	+	2	Parent=Os01t0632700-01
Chr01	irgsp1_rep	CDS	25337911	25337921	.	+	2	Parent=Os01t0632700-01
Chr01	irgsp1_rep	three_prime_UTR	25337922	25338137	.	+	.	Parent=Os01t0632700-01
Chr01	irgsp1_rep	mRNA	25330971	25335831	.	+	.	ID=Os01t0632700-02;Name=Os01t0632700-02;Locus_id=Os01g0632700;Note=Similar to Root cap protein 1-like.;Transcript_evidence=AK070692 (DDBJ%2C Best hit);ORF_evidence=C8TEW5 (UniProt);NIAS_FLcDNA=J023058J09;TENOR=Os01t0632700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	25330971	25331352	.	+	.	Parent=Os01t0632700-02
Chr01	irgsp1_rep	five_prime_UTR	25333938	25335524	.	+	.	Parent=Os01t0632700-02
Chr01	irgsp1_rep	CDS	25335525	25335716	.	+	0	Parent=Os01t0632700-02
Chr01	irgsp1_rep	three_prime_UTR	25335717	25335831	.	+	.	Parent=Os01t0632700-02
Chr01	irgsp1_rep	mRNA	25350681	25351536	.	-	.	ID=Os01t0633000-01;Name=Os01t0633000-01;Locus_id=Os01g0633000;Note=Similar to 50S ribosomal protein L31.;Transcript_evidence=AK062051 (DDBJ%2C Best hit);ORF_evidence=A2WSX8 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L31 (IPR002150);NIAS_FLcDNA=001-044-B04;Expression=AK062051;TENOR=Os01t0633000-01;KEGG=Os01t0633000-01
Chr01	irgsp1_rep	five_prime_UTR	25351453	25351536	.	-	.	Parent=Os01t0633000-01
Chr01	irgsp1_rep	CDS	25351363	25351452	.	-	0	Parent=Os01t0633000-01
Chr01	irgsp1_rep	CDS	25350937	25351254	.	-	0	Parent=Os01t0633000-01
Chr01	irgsp1_rep	three_prime_UTR	25350681	25350936	.	-	.	Parent=Os01t0633000-01
Chr01	irgsp1_rep	mRNA	25353805	25361883	.	+	.	ID=Os01t0633100-01;Name=Os01t0633100-01;Locus_id=Os01g0633100;RAP-DB Gene Symbol Synonym(s)=AGPL2%2C OsAGPL2%2C osagpl2%2C APL2%2C OsAPL2%2C AGPiso%2C sh2%2C Sh2;RAP-DB Gene Name Synonym(s)=ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 2%2C sativa ADP-glucose pyrophosphorylase large subunit 2%2C ADP-glucose Pyrophosphorylase large subunit 2%2C AGPase large subunit 2%2C AGPase large unit 2%2C ADP-glucose pyrophosphorylase subunit SH2;CGSNL Gene Symbol=AGPL2;CGSNL Gene Name=ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 2;Oryzabase Gene Symbol Synonym(s)=OsAGPL2%2C osagpl2%2C APL2%2C OsAPL2%2C AGPiso%2C sh2%2C Sh2%2C GIF2%2C GAS1;Oryzabase Gene Name Synonym(s)=sativa ADP-glucose pyrophosphorylase large subunit 2%2C ADP-glucose Pyrophosphorylase large subunit 2%2C AGPase large subunit 2%2C AGPase large unit 2%2C ADP-glucose pyrophosphorylase subunit SH2%2C GRAIN INCOMPLETE FILLING 2;Note=ADP-glucose pyrophosphorylase large subunit%2C Controll of starch biosynthesis in endosperm development;Transcript_evidence=AK071497;ORF_evidence=Q7G065;GO=Biological Process: glycogen biosynthetic process (GO:0005978),Biological Process: biosynthetic process (GO:0009058),Molecular Function: glucose-1-phosphate adenylyltransferase activity (GO:0008878),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=Nucleotide-diphospho-sugar transferases (IPR029044),Nucleotidyl transferase (IPR005835),Trimeric LpxA-like (IPR011004),ADP-glucose pyrophosphorylase%2C conserved site (IPR005836);NIAS_FLcDNA=J023098M19;Manual Curation=November 19%2C 2014;Literature_PMID=24747952;Oryzabase=8252;TENOR=Os01t0633100-01;KEGG=Os01t0633100-01
Chr01	irgsp1_rep	five_prime_UTR	25353805	25354262	.	+	.	Parent=Os01t0633100-01
Chr01	irgsp1_rep	five_prime_UTR	25355074	25355156	.	+	.	Parent=Os01t0633100-01
Chr01	irgsp1_rep	five_prime_UTR	25357573	25357596	.	+	.	Parent=Os01t0633100-01
Chr01	irgsp1_rep	CDS	25357597	25357803	.	+	0	Parent=Os01t0633100-01
Chr01	irgsp1_rep	CDS	25358196	25358318	.	+	0	Parent=Os01t0633100-01
Chr01	irgsp1_rep	CDS	25358924	25359094	.	+	0	Parent=Os01t0633100-01
Chr01	irgsp1_rep	CDS	25359192	25359281	.	+	0	Parent=Os01t0633100-01
Chr01	irgsp1_rep	CDS	25359386	25359472	.	+	0	Parent=Os01t0633100-01
Chr01	irgsp1_rep	CDS	25359553	25359608	.	+	0	Parent=Os01t0633100-01
Chr01	irgsp1_rep	CDS	25359701	25359794	.	+	1	Parent=Os01t0633100-01
Chr01	irgsp1_rep	CDS	25359921	25360033	.	+	0	Parent=Os01t0633100-01
Chr01	irgsp1_rep	CDS	25360100	25360172	.	+	1	Parent=Os01t0633100-01
Chr01	irgsp1_rep	CDS	25360492	25360572	.	+	0	Parent=Os01t0633100-01
Chr01	irgsp1_rep	CDS	25360754	25360840	.	+	0	Parent=Os01t0633100-01
Chr01	irgsp1_rep	CDS	25360920	25361024	.	+	0	Parent=Os01t0633100-01
Chr01	irgsp1_rep	CDS	25361168	25361274	.	+	0	Parent=Os01t0633100-01
Chr01	irgsp1_rep	CDS	25361370	25361430	.	+	1	Parent=Os01t0633100-01
Chr01	irgsp1_rep	CDS	25361523	25361624	.	+	0	Parent=Os01t0633100-01
Chr01	irgsp1_rep	three_prime_UTR	25361625	25361883	.	+	.	Parent=Os01t0633100-01
Chr01	irgsp1_rep	mRNA	25363099	25367066	.	+	.	ID=Os01t0633200-01;Name=Os01t0633200-01;Locus_id=Os01g0633200;Oryzabase Gene Symbol Synonym(s)=X1%2C OsFDML3%2C FDML3;Oryzabase Gene Name Synonym(s)=transcription factor X1%2C FACTOR OF DNA METHYLATION LIKE 3;Note=Similar to X1 (Fragment).;Transcript_evidence=AK069077 (DDBJ%2C Best hit);ORF_evidence=O48878 (UniProt);InterPro=Uncharacterised domain XH (IPR005379),XS domain (IPR005380),Zinc finger-XS domain (IPR005381);NIAS_FLcDNA=J023007G13;Oryzabase=16275;Expression=AK069077;TENOR=Os01t0633200-01;KEGG=Os01t0633200-01
Chr01	irgsp1_rep	five_prime_UTR	25363099	25363316	.	+	.	Parent=Os01t0633200-01
Chr01	irgsp1_rep	five_prime_UTR	25363646	25363674	.	+	.	Parent=Os01t0633200-01
Chr01	irgsp1_rep	CDS	25363675	25364566	.	+	0	Parent=Os01t0633200-01
Chr01	irgsp1_rep	CDS	25364705	25364886	.	+	2	Parent=Os01t0633200-01
Chr01	irgsp1_rep	CDS	25365126	25365215	.	+	0	Parent=Os01t0633200-01
Chr01	irgsp1_rep	CDS	25365311	25365598	.	+	0	Parent=Os01t0633200-01
Chr01	irgsp1_rep	CDS	25365733	25365945	.	+	0	Parent=Os01t0633200-01
Chr01	irgsp1_rep	CDS	25366449	25366673	.	+	0	Parent=Os01t0633200-01
Chr01	irgsp1_rep	three_prime_UTR	25366674	25367066	.	+	.	Parent=Os01t0633200-01
Chr01	irgsp1_rep	mRNA	25365364	25367117	.	+	.	ID=Os01t0633200-02;Name=Os01t0633200-02;Locus_id=Os01g0633200;Oryzabase Gene Symbol Synonym(s)=X1%2C OsFDML3%2C FDML3;Oryzabase Gene Name Synonym(s)=transcription factor X1%2C FACTOR OF DNA METHYLATION LIKE 3;Note=Similar to X1 (Fragment).;Transcript_evidence=AK059669 (DDBJ%2C Best hit);ORF_evidence=Q3T7E5 (UniProt);InterPro=Uncharacterised domain XH (IPR005379);NIAS_FLcDNA=001-031-F06;Oryzabase=16275;Expression=AK059669;TENOR=Os01t0633200-02;KEGG=Os01t0633200-02
Chr01	irgsp1_rep	five_prime_UTR	25365364	25365364	.	+	.	Parent=Os01t0633200-02
Chr01	irgsp1_rep	CDS	25365365	25365598	.	+	0	Parent=Os01t0633200-02
Chr01	irgsp1_rep	CDS	25365733	25365945	.	+	0	Parent=Os01t0633200-02
Chr01	irgsp1_rep	CDS	25366449	25366673	.	+	0	Parent=Os01t0633200-02
Chr01	irgsp1_rep	three_prime_UTR	25366674	25367117	.	+	.	Parent=Os01t0633200-02
Chr01	irgsp1_rep	mRNA	25368481	25371006	.	+	.	ID=Os01t0633400-01;Name=Os01t0633400-01;Locus_id=Os01g0633400;Oryzabase Gene Symbol Synonym(s)=OsCBSX10;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSX10%2C CBS domain containing protein OsCBSX10;Note=Cystathionine beta-synthase%2C core domain containing protein.;Transcript_evidence=AK108988 (DDBJ%2C Best hit);ORF_evidence=Q3T7E1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein binding (GO:0005515);InterPro=Cystathionine beta-synthase%2C core (IPR000644),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=002-153-F10;Oryzabase=10327;Expression=AK108988;TENOR=Os01t0633400-01;KEGG=Os01t0633400-01
Chr01	irgsp1_rep	five_prime_UTR	25368481	25368521	.	+	.	Parent=Os01t0633400-01
Chr01	irgsp1_rep	CDS	25368522	25368669	.	+	0	Parent=Os01t0633400-01
Chr01	irgsp1_rep	CDS	25368768	25368940	.	+	2	Parent=Os01t0633400-01
Chr01	irgsp1_rep	CDS	25369117	25369206	.	+	0	Parent=Os01t0633400-01
Chr01	irgsp1_rep	CDS	25369377	25369538	.	+	0	Parent=Os01t0633400-01
Chr01	irgsp1_rep	CDS	25369624	25369706	.	+	0	Parent=Os01t0633400-01
Chr01	irgsp1_rep	CDS	25370305	25370493	.	+	1	Parent=Os01t0633400-01
Chr01	irgsp1_rep	CDS	25370582	25370960	.	+	1	Parent=Os01t0633400-01
Chr01	irgsp1_rep	three_prime_UTR	25370961	25371006	.	+	.	Parent=Os01t0633400-01
Chr01	irgsp1_rep	mRNA	25382714	25384678	.	+	.	ID=Os01t0633500-01;Name=Os01t0633500-01;Locus_id=Os01g0633500;RAP-DB Gene Symbol Synonym(s)=Rd%2C DFR;RAP-DB Gene Name Synonym(s)=red pericarp and seed coat%2C dihydroflavonol 4-reductase;CGSNL Gene Symbol=RD;CGSNL Gene Name=RED PERICARP AND SEED COAT;Oryzabase Gene Symbol Synonym(s)=Rd%2C DFR%2C OsDFR%2C OS-DFR;Oryzabase Gene Name Synonym(s)=Red pericarp and seed coat%2C dihydroflavonol 4-reductase%2C dihydroflavonol-4-reductase;Note=Dihydroflavonol-4-reductase (DFR)%2C Proanthocyanidin synthesis;Transcript_evidence=AB003496 (Murasaki-ine),Inferred from literature;ORF_evidence=Q9S7C3;GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD(P)-binding domain superfamily (IPR036291),NAD-dependent epimerase/dehydratase (IPR001509);Manual Curation=June 26%2C 2018;Literature_PMID=17163879,DOI:org/10.5511/plantbiotechnology.15.221;Oryzabase=467;TENOR=Os01t0633500-00
Chr01	irgsp1_rep	five_prime_UTR	25382714	25382938	.	+	.	Parent=Os01t0633500-01
Chr01	irgsp1_rep	five_prime_UTR	25383051	25383193	.	+	.	Parent=Os01t0633500-01
Chr01	irgsp1_rep	CDS	25383194	25383415	.	+	0	Parent=Os01t0633500-01
Chr01	irgsp1_rep	CDS	25383803	25384435	.	+	0	Parent=Os01t0633500-01
Chr01	irgsp1_rep	three_prime_UTR	25384436	25384678	.	+	.	Parent=Os01t0633500-01
Chr01	irgsp1_rep	mRNA	25402257	25406520	.	-	.	ID=Os01t0633800-01;Name=Os01t0633800-01;Locus_id=Os01g0633800;Note=Non-protein coding transcript.;Transcript_evidence=AK120696 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013170G20;TENOR=Os01t0633800-01
Chr01	irgsp1_rep	exon	25402257	25406520	.	-	.	Parent=Os01t0633800-01
Chr01	irgsp1_rep	mRNA	25409162	25413922	.	-	.	ID=Os01t0633900-01;Name=Os01t0633900-01;Locus_id=Os01g0633900;Note=Hypothetical conserved gene.;Transcript_evidence=AK242022 (DDBJ%2C Best hit);ORF_evidence=NP_191735.2 (RefSeq);NIAS_FLcDNA=J075112D18;TENOR=Os01t0633900-01;KEGG=Os01t0633900-01
Chr01	irgsp1_rep	five_prime_UTR	25413436	25413922	.	-	.	Parent=Os01t0633900-01
Chr01	irgsp1_rep	five_prime_UTR	25411931	25412119	.	-	.	Parent=Os01t0633900-01
Chr01	irgsp1_rep	CDS	25411921	25411930	.	-	0	Parent=Os01t0633900-01
Chr01	irgsp1_rep	CDS	25411068	25411118	.	-	2	Parent=Os01t0633900-01
Chr01	irgsp1_rep	CDS	25410908	25410969	.	-	2	Parent=Os01t0633900-01
Chr01	irgsp1_rep	CDS	25409534	25409614	.	-	0	Parent=Os01t0633900-01
Chr01	irgsp1_rep	three_prime_UTR	25409162	25409533	.	-	.	Parent=Os01t0633900-01
Chr01	irgsp1_rep	mRNA	25420384	25425723	.	-	.	ID=Os01t0634300-00;Name=Os01t0634300-00;Locus_id=Os01g0634300;Oryzabase Gene Symbol Synonym(s)=OsDjC11;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C11;Note=Conserved hypothetical protein.;Transcript_evidence=AK373020 (DDBJ);ORF_evidence=NP_001043659.2 (RefSeq);Oryzabase=12168;TENOR=Os01t0634300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	25425314	25425723	.	-	0	Parent=Os01t0634300-00
Chr01	irgsp1_rep	CDS	25420384	25423987	.	-	1	Parent=Os01t0634300-00
Chr01	irgsp1_rep	mRNA	25439082	25440898	.	-	.	ID=Os01t0634500-00;Name=Os01t0634500-00;Locus_id=Os01g0634500;CGSNL Gene Symbol=LAC2;CGSNL Gene Name=LACCASE 2;Oryzabase Gene Symbol Synonym(s)=OsLAC2;Oryzabase Gene Name Synonym(s)=laccase 2;Note=Similar to Laccase-2.;Transcript_evidence=AK250758 (DDBJ);ORF_evidence=Q8RYM9 (UniProt);GO=Biological Process: lignin catabolic process (GO:0046274),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: apoplast (GO:0048046),Molecular Function: copper ion binding (GO:0005507),Molecular Function: laccase activity (GO:0008471),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Multicopper oxidase%2C type 1 (IPR001117),Multicopper oxidase%2C copper-binding site (IPR002355),Cupredoxin (IPR008972),Multicopper oxidase%2C type 2 (IPR011706),Multicopper oxidase%2C type 3 (IPR011707),Laccase (IPR017761);Oryzabase=18570;TENOR=Os01t0634500-00;KEGG=Os01t0634500-00
Chr01	irgsp1_rep	five_prime_UTR	25440877	25440898	.	-	.	Parent=Os01t0634500-00
Chr01	irgsp1_rep	CDS	25440348	25440876	.	-	0	Parent=Os01t0634500-00
Chr01	irgsp1_rep	CDS	25439323	25440249	.	-	2	Parent=Os01t0634500-00
Chr01	irgsp1_rep	CDS	25439082	25439212	.	-	2	Parent=Os01t0634500-00
Chr01	irgsp1_rep	mRNA	25442602	25444219	.	-	.	ID=Os01t0634600-00;Name=Os01t0634600-00;Locus_id=Os01g0634600;CGSNL Gene Symbol=PME4;CGSNL Gene Name=PECTIN METHYLESTERASE 4;Oryzabase Gene Symbol Synonym(s)=OsPME4;Oryzabase Gene Name Synonym(s)=pectin methylesterase 4;Note=Pectin lyase fold/virulence factor domain containing protein.;Transcript_evidence=EU966562 (DDBJ);ORF_evidence=B9EY81 (UniProt);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),Pectinesterase%2C active site (IPR018040);Oryzabase=13168;TENOR=Os01t0634600-00;KEGG=Os01t0634600-00
Chr01	irgsp1_rep	five_prime_UTR	25444158	25444219	.	-	.	Parent=Os01t0634600-00
Chr01	irgsp1_rep	CDS	25443912	25444157	.	-	0	Parent=Os01t0634600-00
Chr01	irgsp1_rep	CDS	25443660	25443809	.	-	0	Parent=Os01t0634600-00
Chr01	irgsp1_rep	CDS	25443317	25443505	.	-	0	Parent=Os01t0634600-00
Chr01	irgsp1_rep	CDS	25442863	25443110	.	-	0	Parent=Os01t0634600-00
Chr01	irgsp1_rep	CDS	25442602	25442746	.	-	1	Parent=Os01t0634600-00
Chr01	irgsp1_rep	mRNA	25448240	25450513	.	+	.	ID=Os01t0634900-00;Name=Os01t0634900-00;Locus_id=Os01g0634900;Oryzabase Gene Symbol Synonym(s)=OsCBSX6;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSX6%2C CBS domain containing protein OsCBSX6;Note=Similar to CBS domain protein-like.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5VM86 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein binding (GO:0005515);InterPro=Cystathionine beta-synthase%2C core (IPR000644),Aldolase-type TIM barrel (IPR013785);Oryzabase=10323;TENOR=Os01t0634900-00
Chr01	irgsp1_rep	CDS	25448240	25448547	.	+	0	Parent=Os01t0634900-00
Chr01	irgsp1_rep	CDS	25448754	25449120	.	+	1	Parent=Os01t0634900-00
Chr01	irgsp1_rep	CDS	25449192	25449273	.	+	0	Parent=Os01t0634900-00
Chr01	irgsp1_rep	CDS	25450028	25450101	.	+	2	Parent=Os01t0634900-00
Chr01	irgsp1_rep	CDS	25450197	25450257	.	+	0	Parent=Os01t0634900-00
Chr01	irgsp1_rep	CDS	25450371	25450513	.	+	2	Parent=Os01t0634900-00
Chr01	irgsp1_rep	mRNA	25457560	25457880	.	+	.	ID=Os01t0635000-00;Name=Os01t0635000-00;Locus_id=Os01g0635000;Note=SANT domain%2C DNA binding domain containing protein.;Transcript_evidence=EU955284 (DDBJ);ORF_evidence=GeneMark;GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Myb%2C DNA-binding (IPR014778),SANT%2C eukarya (IPR017884);TENOR=Os01t0635000-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	25457560	25457862	.	+	0	Parent=Os01t0635000-00
Chr01	irgsp1_rep	three_prime_UTR	25457863	25457880	.	+	.	Parent=Os01t0635000-00
Chr01	irgsp1_rep	mRNA	25462003	25463635	.	+	.	ID=Os01t0635200-01;Name=Os01t0635200-01;Locus_id=Os01g0635200;Note=Homeodomain-like containing protein.;Transcript_evidence=AK112054 (DDBJ%2C Best hit);ORF_evidence=B6TX27 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),SANT%2C eukarya (IPR017884);NIAS_FLcDNA=001-108-G06;Expression=AK112054;TENOR=Os01t0635200-01;KEGG=Os01t0635200-01
Chr01	irgsp1_rep	five_prime_UTR	25462003	25462059	.	+	.	Parent=Os01t0635200-01
Chr01	irgsp1_rep	CDS	25462060	25462312	.	+	0	Parent=Os01t0635200-01
Chr01	irgsp1_rep	CDS	25463434	25463438	.	+	2	Parent=Os01t0635200-01
Chr01	irgsp1_rep	three_prime_UTR	25463439	25463635	.	+	.	Parent=Os01t0635200-01
Chr01	irgsp1_rep	mRNA	25466388	25474144	.	+	.	ID=Os01t0635400-01;Name=Os01t0635400-01;Locus_id=Os01g0635400;Oryzabase Gene Symbol Synonym(s)=OsWD40-20;Note=Similar to mRNA-associated protein mrnp 41 (Rae1 protein homolog).;Transcript_evidence=AK111923 (DDBJ%2C Best hit),AK102655 (DDBJ%2C Best hit);ORF_evidence=NP_001152626.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=001-013-B12,J033101G11;Oryzabase=10701;Expression=AK111923;TENOR=Os01t0635400-01;KEGG=Os01t0635400-01
Chr01	irgsp1_rep	five_prime_UTR	25466388	25466459	.	+	.	Parent=Os01t0635400-01
Chr01	irgsp1_rep	CDS	25466460	25466519	.	+	0	Parent=Os01t0635400-01
Chr01	irgsp1_rep	CDS	25466641	25466727	.	+	0	Parent=Os01t0635400-01
Chr01	irgsp1_rep	CDS	25466851	25466919	.	+	0	Parent=Os01t0635400-01
Chr01	irgsp1_rep	CDS	25467035	25467228	.	+	0	Parent=Os01t0635400-01
Chr01	irgsp1_rep	CDS	25467521	25467662	.	+	1	Parent=Os01t0635400-01
Chr01	irgsp1_rep	CDS	25468403	25468483	.	+	0	Parent=Os01t0635400-01
Chr01	irgsp1_rep	CDS	25469260	25469388	.	+	0	Parent=Os01t0635400-01
Chr01	irgsp1_rep	CDS	25469700	25469777	.	+	0	Parent=Os01t0635400-01
Chr01	irgsp1_rep	CDS	25472393	25472464	.	+	0	Parent=Os01t0635400-01
Chr01	irgsp1_rep	CDS	25473536	25473616	.	+	0	Parent=Os01t0635400-01
Chr01	irgsp1_rep	CDS	25473897	25473938	.	+	0	Parent=Os01t0635400-01
Chr01	irgsp1_rep	three_prime_UTR	25473939	25474144	.	+	.	Parent=Os01t0635400-01
Chr01	irgsp1_rep	mRNA	25468113	25468608	.	+	.	ID=Os01t0635400-02;Name=Os01t0635400-02;Locus_id=Os01g0635400;Oryzabase Gene Symbol Synonym(s)=OsWD40-20;Note=Similar to rae1-like protein.;Transcript_evidence=AK110703 (DDBJ%2C Best hit);ORF_evidence=NP_001152626.1 (RefSeq);NIAS_FLcDNA=002-170-C04;Oryzabase=10701;Expression=AK110703;TENOR=Os01t0635400-02;KEGG=Os01t0635400-02
Chr01	irgsp1_rep	five_prime_UTR	25468113	25468390	.	+	.	Parent=Os01t0635400-02
Chr01	irgsp1_rep	CDS	25468391	25468591	.	+	0	Parent=Os01t0635400-02
Chr01	irgsp1_rep	three_prime_UTR	25468592	25468608	.	+	.	Parent=Os01t0635400-02
Chr01	irgsp1_rep	mRNA	25476388	25477555	.	-	.	ID=Os01t0635550-00;Name=Os01t0635550-00;Locus_id=Os01g0635550;CGSNL Gene Symbol=ZHD5;CGSNL Gene Name=ZINC FINGER HOMEODOMAIN CLASS HOMEOBOX TRANSCRIPTION FACTOR 5;Oryzabase Gene Symbol Synonym(s)=OsZHD5;Oryzabase Gene Name Synonym(s)=zinc finger homeodomain class homeobox transcription factor 5;Note=ZF-HD homeobox protein Cys/His-rich dimerisation region domain containing protein.;Transcript_evidence=CU406357 (DDBJ%2C Best hit);ORF_evidence=NP_001152263.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Homeobox domain%2C ZF-HD class (IPR006455),ZF-HD homeobox protein%2C Cys/His-rich dimerisation domain (IPR006456),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);Oryzabase=15618;TENOR=Os01t0635550-00;KEGG=Os01t0635550-00
Chr01	irgsp1_rep	five_prime_UTR	25477443	25477555	.	-	.	Parent=Os01t0635550-00
Chr01	irgsp1_rep	CDS	25476744	25477442	.	-	0	Parent=Os01t0635550-00
Chr01	irgsp1_rep	three_prime_UTR	25476388	25476743	.	-	.	Parent=Os01t0635550-00
Chr01	irgsp1_rep	mRNA	25478689	25483004	.	-	.	ID=Os01t0635600-00;Name=Os01t0635600-00;Locus_id=Os01g0635600;CGSNL Gene Symbol=ZHD5;CGSNL Gene Name=ZINC FINGER HOMEODOMAIN CLASS HOMEOBOX TRANSCRIPTION FACTOR 5;Oryzabase Gene Symbol Synonym(s)=OsZHD5;Oryzabase Gene Name Synonym(s)=zinc finger homeodomain class homeobox transcription factor 5;Note=Trimeric LpxA-like domain containing protein.;Transcript_evidence=AK331549 (DDBJ);ORF_evidence=B9EY87 (UniProt);GO=Molecular Function: transferase activity (GO:0016740);InterPro=Trimeric LpxA-like (IPR011004);Oryzabase=15618;TENOR=Os01t0635600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	25482864	25483004	.	-	.	Parent=Os01t0635600-00
Chr01	irgsp1_rep	CDS	25482824	25482863	.	-	0	Parent=Os01t0635600-00
Chr01	irgsp1_rep	CDS	25478689	25481033	.	-	2	Parent=Os01t0635600-00
Chr01	irgsp1_rep	mRNA	25481887	25484008	.	+	.	ID=Os01t0635800-01;Name=Os01t0635800-01;Locus_id=Os01g0635800;Note=Hypothetical gene.;Transcript_evidence=AK287536 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065004M16;TENOR=Os01t0635800-01;KEGG=Os01t0635800-01
Chr01	irgsp1_rep	five_prime_UTR	25481887	25483035	.	+	.	Parent=Os01t0635800-01
Chr01	irgsp1_rep	CDS	25483036	25483260	.	+	0	Parent=Os01t0635800-01
Chr01	irgsp1_rep	three_prime_UTR	25483261	25484008	.	+	.	Parent=Os01t0635800-01
Chr01	irgsp1_rep	mRNA	25490150	25490661	.	-	.	ID=Os01t0636100-01;Name=Os01t0636100-01;Locus_id=Os01g0636100;Note=Non-protein coding transcript.;Transcript_evidence=AK106223 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-100-A01;TENOR=Os01t0636100-01
Chr01	irgsp1_rep	exon	25490150	25490661	.	-	.	Parent=Os01t0636100-01
Chr01	irgsp1_rep	mRNA	25492188	25492237	.	-	.	ID=Os01t0636200-00;Name=Os01t0636200-00;Locus_id=Os01g0636200;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0636200-00
Chr01	irgsp1_rep	exon	25492188	25492237	.	-	.	Parent=Os01t0636200-00
Chr01	irgsp1_rep	mRNA	25501902	25504409	.	-	.	ID=Os01t0636400-01;Name=Os01t0636400-01;Locus_id=Os01g0636400;Note=Alpha/beta hydrolase family protein.;Transcript_evidence=AK240856 (DDBJ%2C Best hit);ORF_evidence=NP_001149890.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Alpha/beta hydrolase fold-1 (IPR000073),Epoxide hydrolase-like (IPR000639);NIAS_FLcDNA=J065021L21;TENOR=Os01t0636400-01;KEGG=Os01t0636400-01
Chr01	irgsp1_rep	five_prime_UTR	25504316	25504409	.	-	.	Parent=Os01t0636400-01
Chr01	irgsp1_rep	CDS	25504013	25504315	.	-	0	Parent=Os01t0636400-01
Chr01	irgsp1_rep	CDS	25503493	25503903	.	-	0	Parent=Os01t0636400-01
Chr01	irgsp1_rep	CDS	25503253	25503342	.	-	0	Parent=Os01t0636400-01
Chr01	irgsp1_rep	CDS	25502354	25502421	.	-	0	Parent=Os01t0636400-01
Chr01	irgsp1_rep	CDS	25502104	25502245	.	-	1	Parent=Os01t0636400-01
Chr01	irgsp1_rep	three_prime_UTR	25501902	25502103	.	-	.	Parent=Os01t0636400-01
Chr01	irgsp1_rep	mRNA	25513947	25518078	.	+	.	ID=Os01t0636500-01;Name=Os01t0636500-01;Locus_id=Os01g0636500;Oryzabase Gene Symbol Synonym(s)=OsPGL19%2C PGL19;Oryzabase Gene Name Synonym(s)=Polygalacturonases-Like 19%2C PG-like 19;Note=Similar to Polygalacturonase PG2.;Transcript_evidence=AK073853 (DDBJ%2C Best hit),AK104990 (DDBJ%2C Best hit);ORF_evidence=NP_001148771.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=J033072D05,001-001-H09;Oryzabase=22296;TENOR=Os01t0636500-01
Chr01	irgsp1_rep	five_prime_UTR	25513947	25514030	.	+	.	Parent=Os01t0636500-01
Chr01	irgsp1_rep	CDS	25514031	25514498	.	+	0	Parent=Os01t0636500-01
Chr01	irgsp1_rep	CDS	25515638	25515769	.	+	0	Parent=Os01t0636500-01
Chr01	irgsp1_rep	CDS	25516202	25516378	.	+	0	Parent=Os01t0636500-01
Chr01	irgsp1_rep	CDS	25516467	25516511	.	+	0	Parent=Os01t0636500-01
Chr01	irgsp1_rep	CDS	25516597	25516804	.	+	0	Parent=Os01t0636500-01
Chr01	irgsp1_rep	CDS	25517118	25517308	.	+	2	Parent=Os01t0636500-01
Chr01	irgsp1_rep	CDS	25517511	25517906	.	+	0	Parent=Os01t0636500-01
Chr01	irgsp1_rep	three_prime_UTR	25517907	25518078	.	+	.	Parent=Os01t0636500-01
Chr01	irgsp1_rep	mRNA	25516026	25523268	.	-	.	ID=Os01t0636600-01;Name=Os01t0636600-01;Locus_id=Os01g0636600;Note=Hypothetical conserved gene.;Transcript_evidence=AK240823 (DDBJ%2C Best hit);ORF_evidence=B9EY90 (UniProt);GO=Molecular Function: iron ion binding (GO:0005506),Molecular Function: peptide deformylase activity (GO:0042586);InterPro=Formylmethionine deformylase (IPR000181),Peptide deformylase (IPR023635);NIAS_FLcDNA=J065013F05;TENOR=Os01t0636600-01;KEGG=Os01t0636600-01
Chr01	irgsp1_rep	five_prime_UTR	25523268	25523268	.	-	.	Parent=Os01t0636600-01
Chr01	irgsp1_rep	CDS	25523051	25523267	.	-	0	Parent=Os01t0636600-01
Chr01	irgsp1_rep	CDS	25522796	25522934	.	-	2	Parent=Os01t0636600-01
Chr01	irgsp1_rep	CDS	25522135	25522327	.	-	1	Parent=Os01t0636600-01
Chr01	irgsp1_rep	CDS	25521229	25521339	.	-	0	Parent=Os01t0636600-01
Chr01	irgsp1_rep	CDS	25520713	25520862	.	-	0	Parent=Os01t0636600-01
Chr01	irgsp1_rep	three_prime_UTR	25517719	25520712	.	-	.	Parent=Os01t0636600-01
Chr01	irgsp1_rep	three_prime_UTR	25517481	25517596	.	-	.	Parent=Os01t0636600-01
Chr01	irgsp1_rep	three_prime_UTR	25516587	25516755	.	-	.	Parent=Os01t0636600-01
Chr01	irgsp1_rep	three_prime_UTR	25516452	25516506	.	-	.	Parent=Os01t0636600-01
Chr01	irgsp1_rep	three_prime_UTR	25516026	25516341	.	-	.	Parent=Os01t0636600-01
Chr01	irgsp1_rep	mRNA	25524187	25532029	.	-	.	ID=Os01t0636700-01;Name=Os01t0636700-01;Locus_id=Os01g0636700;Oryzabase Gene Symbol Synonym(s)=CSB;Note=DEAD-like helicase%2C N-terminal domain containing protein.;Transcript_evidence=AK099822 (DDBJ%2C Best hit);ORF_evidence=B9EY91 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP binding (GO:0005524);InterPro=SNF2-related (IPR000330),RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J013101J07;Oryzabase=21270;Expression=AK099822;TENOR=Os01t0636700-01;KEGG=Os01t0636700-01
Chr01	irgsp1_rep	five_prime_UTR	25531885	25532029	.	-	.	Parent=Os01t0636700-01
Chr01	irgsp1_rep	five_prime_UTR	25531480	25531505	.	-	.	Parent=Os01t0636700-01
Chr01	irgsp1_rep	CDS	25531436	25531479	.	-	0	Parent=Os01t0636700-01
Chr01	irgsp1_rep	CDS	25531307	25531347	.	-	1	Parent=Os01t0636700-01
Chr01	irgsp1_rep	CDS	25530490	25530653	.	-	2	Parent=Os01t0636700-01
Chr01	irgsp1_rep	CDS	25530065	25530167	.	-	0	Parent=Os01t0636700-01
Chr01	irgsp1_rep	CDS	25529824	25529993	.	-	2	Parent=Os01t0636700-01
Chr01	irgsp1_rep	CDS	25529416	25529616	.	-	0	Parent=Os01t0636700-01
Chr01	irgsp1_rep	CDS	25529186	25529319	.	-	0	Parent=Os01t0636700-01
Chr01	irgsp1_rep	CDS	25529054	25529102	.	-	1	Parent=Os01t0636700-01
Chr01	irgsp1_rep	CDS	25528358	25528594	.	-	0	Parent=Os01t0636700-01
Chr01	irgsp1_rep	CDS	25528124	25528270	.	-	0	Parent=Os01t0636700-01
Chr01	irgsp1_rep	CDS	25527925	25528038	.	-	0	Parent=Os01t0636700-01
Chr01	irgsp1_rep	CDS	25527846	25527851	.	-	0	Parent=Os01t0636700-01
Chr01	irgsp1_rep	three_prime_UTR	25527774	25527845	.	-	.	Parent=Os01t0636700-01
Chr01	irgsp1_rep	three_prime_UTR	25527416	25527607	.	-	.	Parent=Os01t0636700-01
Chr01	irgsp1_rep	three_prime_UTR	25527260	25527331	.	-	.	Parent=Os01t0636700-01
Chr01	irgsp1_rep	three_prime_UTR	25527103	25527183	.	-	.	Parent=Os01t0636700-01
Chr01	irgsp1_rep	three_prime_UTR	25526189	25526307	.	-	.	Parent=Os01t0636700-01
Chr01	irgsp1_rep	three_prime_UTR	25526002	25526113	.	-	.	Parent=Os01t0636700-01
Chr01	irgsp1_rep	three_prime_UTR	25525650	25525718	.	-	.	Parent=Os01t0636700-01
Chr01	irgsp1_rep	three_prime_UTR	25525481	25525572	.	-	.	Parent=Os01t0636700-01
Chr01	irgsp1_rep	three_prime_UTR	25525253	25525402	.	-	.	Parent=Os01t0636700-01
Chr01	irgsp1_rep	three_prime_UTR	25525102	25525176	.	-	.	Parent=Os01t0636700-01
Chr01	irgsp1_rep	three_prime_UTR	25524890	25525025	.	-	.	Parent=Os01t0636700-01
Chr01	irgsp1_rep	three_prime_UTR	25524187	25524568	.	-	.	Parent=Os01t0636700-01
Chr01	irgsp1_rep	mRNA	25541512	25542937	.	-	.	ID=Os01t0637100-00;Name=Os01t0637100-00;Locus_id=Os01g0637100;Oryzabase Gene Symbol Synonym(s)=OsFbox029%2C OsFbox29%2C Os_F0384;Oryzabase Gene Name Synonym(s)=F-box protein 29;Note=Similar to predicted protein.;Transcript_evidence=EU941081 (DDBJ);ORF_evidence=XP_002884741.1 (RefSeq);InterPro=LNS2%2C Lipin/Ned1/Smp2 (IPR013209),HAD-like domain (IPR023214);Oryzabase=16830;TENOR=Os01t0637100-00;KEGG=Os01t0637100-00
Chr01	irgsp1_rep	CDS	25542719	25542937	.	-	0	Parent=Os01t0637100-00
Chr01	irgsp1_rep	CDS	25542610	25542639	.	-	0	Parent=Os01t0637100-00
Chr01	irgsp1_rep	three_prime_UTR	25542545	25542609	.	-	.	Parent=Os01t0637100-00
Chr01	irgsp1_rep	three_prime_UTR	25541512	25541821	.	-	.	Parent=Os01t0637100-00
Chr01	irgsp1_rep	mRNA	25551701	25573478	.	-	.	ID=Os01t0637300-00;Name=Os01t0637300-00;Locus_id=Os01g0637300;Note=Conserved hypothetical protein.;Transcript_evidence=CT828225 (DDBJ%2C Best hit);ORF_evidence=NP_001061036.1 (RefSeq);TENOR=Os01t0637300-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	25573478	25573478	.	-	.	Parent=Os01t0637300-00
Chr01	irgsp1_rep	CDS	25573313	25573477	.	-	0	Parent=Os01t0637300-00
Chr01	irgsp1_rep	CDS	25566800	25566852	.	-	0	Parent=Os01t0637300-00
Chr01	irgsp1_rep	CDS	25566464	25566711	.	-	1	Parent=Os01t0637300-00
Chr01	irgsp1_rep	CDS	25565769	25565860	.	-	2	Parent=Os01t0637300-00
Chr01	irgsp1_rep	three_prime_UTR	25565624	25565768	.	-	.	Parent=Os01t0637300-00
Chr01	irgsp1_rep	three_prime_UTR	25565395	25565530	.	-	.	Parent=Os01t0637300-00
Chr01	irgsp1_rep	three_prime_UTR	25565259	25565303	.	-	.	Parent=Os01t0637300-00
Chr01	irgsp1_rep	three_prime_UTR	25553348	25553469	.	-	.	Parent=Os01t0637300-00
Chr01	irgsp1_rep	three_prime_UTR	25552932	25552998	.	-	.	Parent=Os01t0637300-00
Chr01	irgsp1_rep	three_prime_UTR	25552431	25552827	.	-	.	Parent=Os01t0637300-00
Chr01	irgsp1_rep	three_prime_UTR	25551701	25552258	.	-	.	Parent=Os01t0637300-00
Chr01	irgsp1_rep	mRNA	25582050	25583950	.	+	.	ID=Os01t0637500-00;Name=Os01t0637500-00;Locus_id=Os01g0637500;Note=Similar to polygalacturonase.;Transcript_evidence=BT068825 (DDBJ);ORF_evidence=NP_001148771.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);TENOR=Os01t0637500-00;KEGG=Os01t0637500-00
Chr01	irgsp1_rep	five_prime_UTR	25582050	25582060	.	+	.	Parent=Os01t0637500-00
Chr01	irgsp1_rep	CDS	25582061	25582237	.	+	0	Parent=Os01t0637500-00
Chr01	irgsp1_rep	CDS	25582326	25582370	.	+	0	Parent=Os01t0637500-00
Chr01	irgsp1_rep	CDS	25582456	25582663	.	+	0	Parent=Os01t0637500-00
Chr01	irgsp1_rep	CDS	25582977	25583167	.	+	2	Parent=Os01t0637500-00
Chr01	irgsp1_rep	CDS	25583370	25583765	.	+	0	Parent=Os01t0637500-00
Chr01	irgsp1_rep	three_prime_UTR	25583766	25583950	.	+	.	Parent=Os01t0637500-00
Chr01	irgsp1_rep	mRNA	25585914	25589162	.	-	.	ID=Os01t0637600-01;Name=Os01t0637600-01;Locus_id=Os01g0637600;Oryzabase Gene Symbol Synonym(s)=OsPDF1B;Oryzabase Gene Name Synonym(s)=peptide deformylase 1B;Note=Similar to Peptide deformylase%2C chloroplast precursor (EC 3.5.1.88) (PDF) (Polypeptide deformylase).;Transcript_evidence=AK106980 (DDBJ%2C Best hit);ORF_evidence=Q5VNN5 (UniProt);GO=Molecular Function: iron ion binding (GO:0005506),Molecular Function: peptide deformylase activity (GO:0042586);InterPro=Formylmethionine deformylase (IPR000181),Peptide deformylase (IPR023635);NIAS_FLcDNA=002-119-H07;Oryzabase=14268;Expression=AK106980;TENOR=Os01t0637600-01;KEGG=Os01t0637600-01 (EC:3.5.1.88)
Chr01	irgsp1_rep	five_prime_UTR	25589109	25589162	.	-	.	Parent=Os01t0637600-01
Chr01	irgsp1_rep	CDS	25588904	25589108	.	-	0	Parent=Os01t0637600-01
Chr01	irgsp1_rep	CDS	25588657	25588795	.	-	2	Parent=Os01t0637600-01
Chr01	irgsp1_rep	CDS	25588000	25588192	.	-	1	Parent=Os01t0637600-01
Chr01	irgsp1_rep	CDS	25587095	25587205	.	-	0	Parent=Os01t0637600-01
Chr01	irgsp1_rep	CDS	25586665	25586727	.	-	0	Parent=Os01t0637600-01
Chr01	irgsp1_rep	CDS	25586196	25586294	.	-	0	Parent=Os01t0637600-01
Chr01	irgsp1_rep	three_prime_UTR	25586186	25586195	.	-	.	Parent=Os01t0637600-01
Chr01	irgsp1_rep	three_prime_UTR	25585914	25586081	.	-	.	Parent=Os01t0637600-01
Chr01	irgsp1_rep	mRNA	25590021	25590654	.	-	.	ID=Os01t0637666-00;Name=Os01t0637666-00;Locus_id=Os01g0637666;Note=Conserved hypothetical protein.;Transcript_evidence=FP100152 (DDBJ);ORF_evidence=A2XHS3 (UniProt);TENOR=Os01t0637666-00
Chr01	irgsp1_rep	CDS	25590277	25590654	.	-	0	Parent=Os01t0637666-00
Chr01	irgsp1_rep	three_prime_UTR	25590021	25590276	.	-	.	Parent=Os01t0637666-00
Chr01	irgsp1_rep	mRNA	25592575	25593523	.	+	.	ID=Os01t0637800-01;Name=Os01t0637800-01;Locus_id=Os01g0637800;RAP-DB Gene Symbol Synonym(s)=OsMYB305;RAP-DB Gene Name Synonym(s)=MYB transcription factor 305;Oryzabase Gene Symbol Synonym(s)=OsMYB8%2C MYB8;Oryzabase Gene Name Synonym(s)=myb transcription factor 8%2C transcription factor MYB8;Note=MYB transcription factor%2C Nitrogen uptake and assimilation%2C Low-nitrogen adaptation;Transcript_evidence=AK334844 (bread wheat);ORF_evidence=Q5VNN2;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeobox-like domain superfamily (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930);Manual Curation=May 1%2C 2020;Literature_PMID=32351516;Oryzabase=11682;TENOR=Os01t0637800-00;Subcellular location=nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	25592575	25592724	.	+	.	Parent=Os01t0637800-01
Chr01	irgsp1_rep	CDS	25592725	25592863	.	+	0	Parent=Os01t0637800-01
Chr01	irgsp1_rep	CDS	25592976	25593523	.	+	2	Parent=Os01t0637800-01
Chr01	irgsp1_rep	mRNA	25598451	25600345	.	+	.	ID=Os01t0638000-01;Name=Os01t0638000-01;Locus_id=Os01g0638000;CGSNL Gene Symbol=UGT703A2;CGSNL Gene Name=UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 703A2;Oryzabase Gene Symbol Synonym(s)=OsUGT703A2;Oryzabase Gene Name Synonym(s)=UDP-glucose-dependent glycosyltransferase 703A2%2C anthocyanin 3'-O-beta-glucosyltransferase;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK101659 (DDBJ%2C Best hit),AK103824 (DDBJ%2C Best hit);ORF_evidence=C4MF46 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J033057I21,J033147K24;Oryzabase=15234;Expression=AK101659;TENOR=Os01t0638000-01;KEGG=Os01t0638000-01
Chr01	irgsp1_rep	five_prime_UTR	25598451	25598546	.	+	.	Parent=Os01t0638000-01
Chr01	irgsp1_rep	CDS	25598547	25600022	.	+	0	Parent=Os01t0638000-01
Chr01	irgsp1_rep	three_prime_UTR	25600023	25600345	.	+	.	Parent=Os01t0638000-01
Chr01	irgsp1_rep	mRNA	25615791	25617367	.	+	.	ID=Os01t0638600-01;Name=Os01t0638600-01;Locus_id=Os01g0638600;RAP-DB Gene Symbol Synonym(s)=UGT703A1;RAP-DB Gene Name Synonym(s)=UDP-glucose-dependent glycosyltransferase 703A1;CGSNL Gene Symbol=UGT703A1;CGSNL Gene Name=UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 703A1;Oryzabase Gene Symbol Synonym(s)=OsUGT703A1;Oryzabase Gene Name Synonym(s)=UDP-glucose-dependent glycosyltransferase 703A1;Note=UDP-glucose-dependent glycosyltransferase;Transcript_evidence=AK458251 (Wheat FLcDNA);ORF_evidence=Q94CY6;GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213),UDP-glycosyltransferase family%2C conserved site (IPR035595);Manual Curation=January 19%2C 2018;Literature_PMID=29045473,28640934;Oryzabase=21816;TENOR=Os01t0638600-00;KEGG=Os01t0638600-00 (EC:2.4.1.-)
Chr01	irgsp1_rep	five_prime_UTR	25615791	25615862	.	+	.	Parent=Os01t0638600-01
Chr01	irgsp1_rep	CDS	25615863	25617353	.	+	0	Parent=Os01t0638600-01
Chr01	irgsp1_rep	three_prime_UTR	25617354	25617367	.	+	.	Parent=Os01t0638600-01
Chr01	irgsp1_rep	mRNA	25617868	25618981	.	-	.	ID=Os01t0638701-01;Name=Os01t0638701-01;Locus_id=Os01g0638701;Note=Non-protein coding transcript.;Transcript_evidence=AK288308 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090020H07;TENOR=Os01t0638701-01
Chr01	irgsp1_rep	exon	25617868	25618981	.	-	.	Parent=Os01t0638701-01
Chr01	irgsp1_rep	mRNA	25627240	25627872	.	+	.	ID=Os01t0638800-00;Name=Os01t0638800-00;Locus_id=Os01g0638800;Note=Hypothetical conserved gene.;Transcript_evidence=BT042689 (DDBJ);ORF_evidence=Q5VNM4 (UniProt);TENOR=Os01t0638800-00;KEGG=Os01t0638800-00
Chr01	irgsp1_rep	five_prime_UTR	25627240	25627257	.	+	.	Parent=Os01t0638800-00
Chr01	irgsp1_rep	CDS	25627258	25627599	.	+	0	Parent=Os01t0638800-00
Chr01	irgsp1_rep	CDS	25627711	25627872	.	+	0	Parent=Os01t0638800-00
Chr01	irgsp1_rep	mRNA	25636995	25640474	.	+	.	ID=Os01t0639100-01;Name=Os01t0639100-01;Locus_id=Os01g0639100;RAP-DB Gene Symbol Synonym(s)=OsRH2;RAP-DB Gene Name Synonym(s)=initiation factor eIF-4A%2C RNA helicase 2;Oryzabase Gene Symbol Synonym(s)=OsRH2%2C RH2%2C eIF4A-3;Oryzabase Gene Name Synonym(s)=initiation factor eIF-4A%2C RNA helices 2%2C Eukaryotic initiation factor 4A-3;Note=DEAD box RNA helicase homologous to eukaryotic initiation factor 4AIII (eIF4AIII)%2C Core components of the exon junction complex (EJC)%2C Regulation of plant height%2C pollen%2C and seed development;Transcript_evidence=AK073640;ORF_evidence=Q5VNM3;GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: ATP binding (GO:0005524);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014),Helicase superfamily 1/2%2C ATP-binding domain (IPR014001),DEAD/DEAH box helicase domain (IPR011545),Helicase%2C C-terminal (IPR001650),ATP-dependent RNA helicase DEAD-box%2C conserved site (IPR000629);NIAS_FLcDNA=J033052B21;Manual Curation=April 19%2C 2016;Literature_PMID=27071313;Oryzabase=17636;Expression=AK073640;TENOR=Os01t0639100-01;KEGG=Os01t0639100-01 (EC:3.6.4.13)
Chr01	irgsp1_rep	five_prime_UTR	25636995	25637019	.	+	.	Parent=Os01t0639100-01
Chr01	irgsp1_rep	CDS	25637020	25637315	.	+	0	Parent=Os01t0639100-01
Chr01	irgsp1_rep	CDS	25637600	25637840	.	+	1	Parent=Os01t0639100-01
Chr01	irgsp1_rep	CDS	25637921	25638001	.	+	0	Parent=Os01t0639100-01
Chr01	irgsp1_rep	CDS	25638401	25638508	.	+	0	Parent=Os01t0639100-01
Chr01	irgsp1_rep	CDS	25638621	25638740	.	+	0	Parent=Os01t0639100-01
Chr01	irgsp1_rep	CDS	25639098	25639262	.	+	0	Parent=Os01t0639100-01
Chr01	irgsp1_rep	CDS	25639353	25639442	.	+	0	Parent=Os01t0639100-01
Chr01	irgsp1_rep	CDS	25640094	25640207	.	+	0	Parent=Os01t0639100-01
Chr01	irgsp1_rep	three_prime_UTR	25640208	25640474	.	+	.	Parent=Os01t0639100-01
Chr01	irgsp1_rep	mRNA	25640719	25647590	.	-	.	ID=Os01t0639200-01;Name=Os01t0639200-01;Locus_id=Os01g0639200;RAP-DB Gene Symbol Synonym(s)=Snl6;RAP-DB Gene Name Synonym(s)=suppressor of BTH-induced%2C NH1-mediated lesion mimic 6;Oryzabase Gene Symbol Synonym(s)=Snl6%2C OsCCR2%2C CCR2;Oryzabase Gene Name Synonym(s)=suppressor of BTH-induced%2C NH1-mediated lesion mimic 6%2C Cinnamoyl-CoA reductase 2;Note=Cinnamoyl-CoA reductase-like gene family member%2C Defense response;Transcript_evidence=XM_015765842;ORF_evidence=Q0JKZ0;GO=Biological Process: steroid biosynthetic process (GO:0006694),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: 3-beta-hydroxy-delta5-steroid dehydrogenase activity (GO:0003854),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616);InterPro=NAD(P)-binding domain (IPR016040),3-beta hydroxysteroid dehydrogenase/isomerase (IPR002225);Manual Curation=May 23%2C 2016;Literature_PMID=20862311;Oryzabase=16696;TENOR=Os01t0639200-00
Chr01	irgsp1_rep	five_prime_UTR	25647273	25647590	.	-	.	Parent=Os01t0639200-01
Chr01	irgsp1_rep	CDS	25646993	25647272	.	-	0	Parent=Os01t0639200-01
Chr01	irgsp1_rep	CDS	25644555	25644730	.	-	2	Parent=Os01t0639200-01
Chr01	irgsp1_rep	CDS	25641697	25641897	.	-	0	Parent=Os01t0639200-01
Chr01	irgsp1_rep	CDS	25641376	25641529	.	-	0	Parent=Os01t0639200-01
Chr01	irgsp1_rep	CDS	25640940	25641268	.	-	2	Parent=Os01t0639200-01
Chr01	irgsp1_rep	three_prime_UTR	25640719	25640939	.	-	.	Parent=Os01t0639200-01
Chr01	irgsp1_rep	mRNA	25681571	25682862	.	+	.	ID=Os01t0639600-01;Name=Os01t0639600-01;Locus_id=Os01g0639600;Note=Protein of unknown function DUF1645 family protein.;Transcript_evidence=AK067056 (DDBJ%2C Best hit);ORF_evidence=A2WT21 (UniProt);InterPro=Protein of unknown function DUF1645 (IPR012442);NIAS_FLcDNA=J013088M21;Expression=AK067056;TENOR=Os01t0639600-01;KEGG=Os01t0639600-01
Chr01	irgsp1_rep	five_prime_UTR	25681571	25681691	.	+	.	Parent=Os01t0639600-01
Chr01	irgsp1_rep	CDS	25681692	25682438	.	+	0	Parent=Os01t0639600-01
Chr01	irgsp1_rep	three_prime_UTR	25682439	25682862	.	+	.	Parent=Os01t0639600-01
Chr01	irgsp1_rep	mRNA	25696671	25705077	.	+	.	ID=Os01t0639900-01;Name=Os01t0639900-01;Locus_id=Os01g0639900;RAP-DB Gene Symbol Synonym(s)=BETACA1%2C Os&beta%3BCA1%2C OsbCA1;RAP-DB Gene Name Synonym(s)=&beta%3B-carbonic anhydrase 1%2C BETA-CARBONIC ANHYDRASE 1%2C b-carbonic anhydrase 1%2C beta-type carbonic anhydrase;CGSNL Gene Symbol=BETACA1;CGSNL Gene Name=BETA-CARBONIC ANHYDRASE 1;Oryzabase Gene Symbol Synonym(s)=OsCA%2C CA%2C OsbetaCA1%2C betaCA1;Oryzabase Gene Name Synonym(s)=Carbonic anhydrase%2C beta-type carbonic anhydrase%2C beta-carbonic anhydrase;Note=beta-carbonic anhydrase (EC:4.2.1.1)%2C Carbon assimilation%2C CO<sub>2</sub>-mediated stomatal pore response;Transcript_evidence=AK060890,AK099825;ORF_evidence=Q7F2G3;GO=Biological Process: carbon utilization (GO:0015976),Molecular Function: carbonate dehydratase activity (GO:0004089),Molecular Function: zinc ion binding (GO:0008270);InterPro=Carbonic anhydrase (IPR001765),Carbonic anhydrase%2C prokaryotic-like%2C conserved site (IPR015892);NIAS_FLcDNA=001-035-B12, J013102G17;Manual Curation=April 19%2C 2017;Literature_PMID=28142196;Oryzabase=16031;TENOR=Os01t0639900-01
Chr01	irgsp1_rep	five_prime_UTR	25696671	25696719	.	+	.	Parent=Os01t0639900-01
Chr01	irgsp1_rep	CDS	25696720	25696929	.	+	0	Parent=Os01t0639900-01
Chr01	irgsp1_rep	CDS	25700780	25700841	.	+	0	Parent=Os01t0639900-01
Chr01	irgsp1_rep	CDS	25700959	25701007	.	+	1	Parent=Os01t0639900-01
Chr01	irgsp1_rep	CDS	25703358	25703474	.	+	0	Parent=Os01t0639900-01
Chr01	irgsp1_rep	CDS	25703597	25703650	.	+	0	Parent=Os01t0639900-01
Chr01	irgsp1_rep	CDS	25704105	25704190	.	+	0	Parent=Os01t0639900-01
Chr01	irgsp1_rep	CDS	25704350	25704455	.	+	1	Parent=Os01t0639900-01
Chr01	irgsp1_rep	CDS	25704646	25704780	.	+	0	Parent=Os01t0639900-01
Chr01	irgsp1_rep	three_prime_UTR	25704781	25705077	.	+	.	Parent=Os01t0639900-01
Chr01	irgsp1_rep	mRNA	25708316	25716827	.	+	.	ID=Os01t0640000-00;Name=Os01t0640000-00;Locus_id=Os01g0640000;Note=Similar to Carbonic anhydrase.;Transcript_evidence=ab initio prediction;ORF_evidence=B8ACD0 (UniProt);GO=Biological Process: carbon utilization (GO:0015976),Molecular Function: carbonate dehydratase activity (GO:0004089),Molecular Function: zinc ion binding (GO:0008270);InterPro=Carbonic anhydrase (IPR001765),Carbonic anhydrase%2C prokaryotic-like%2C conserved site (IPR015892);TENOR=Os01t0640000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	25708316	25708489	.	+	0	Parent=Os01t0640000-00
Chr01	irgsp1_rep	CDS	25708558	25708649	.	+	0	Parent=Os01t0640000-00
Chr01	irgsp1_rep	CDS	25708707	25708755	.	+	1	Parent=Os01t0640000-00
Chr01	irgsp1_rep	CDS	25714665	25714781	.	+	0	Parent=Os01t0640000-00
Chr01	irgsp1_rep	CDS	25714894	25714947	.	+	0	Parent=Os01t0640000-00
Chr01	irgsp1_rep	CDS	25715827	25715912	.	+	0	Parent=Os01t0640000-00
Chr01	irgsp1_rep	CDS	25716133	25716238	.	+	1	Parent=Os01t0640000-00
Chr01	irgsp1_rep	CDS	25716792	25716827	.	+	0	Parent=Os01t0640000-00
Chr01	irgsp1_rep	mRNA	25710912	25712866	.	+	.	ID=Os01t0640100-00;Name=Os01t0640100-00;Locus_id=Os01g0640100;Note=Conserved hypothetical protein.;Transcript_evidence=AK099804 (DDBJ%2C Secondary hit);ORF_evidence=Q8RUU3 (UniProt);TENOR=Os01t0640100-00
Chr01	irgsp1_rep	five_prime_UTR	25710912	25711947	.	+	.	Parent=Os01t0640100-00
Chr01	irgsp1_rep	CDS	25711948	25712052	.	+	0	Parent=Os01t0640100-00
Chr01	irgsp1_rep	CDS	25712292	25712866	.	+	0	Parent=Os01t0640100-00
Chr01	irgsp1_rep	mRNA	25718967	25724624	.	-	.	ID=Os01t0640200-00;Name=Os01t0640200-00;Locus_id=Os01g0640200;Note=Similar to UPF0497 membrane protein Sb03g029220.;Transcript_evidence=EU974751 (DDBJ);ORF_evidence=C5XEK4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=von Willebrand factor%2C type A (IPR002035),Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);TENOR=Os01t0640200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	25722928	25724624	.	-	0	Parent=Os01t0640200-00
Chr01	irgsp1_rep	CDS	25720019	25720183	.	-	1	Parent=Os01t0640200-00
Chr01	irgsp1_rep	CDS	25719101	25719119	.	-	1	Parent=Os01t0640200-00
Chr01	irgsp1_rep	three_prime_UTR	25718967	25719100	.	-	.	Parent=Os01t0640200-00
Chr01	irgsp1_rep	mRNA	25744765	25747784	.	-	.	ID=Os01t0640400-00;Name=Os01t0640400-00;Locus_id=Os01g0640400;Note=Hypothetical protein.;Transcript_evidence=tplb0040n23 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0640400-00
Chr01	irgsp1_rep	five_prime_UTR	25747386	25747784	.	-	.	Parent=Os01t0640400-00
Chr01	irgsp1_rep	CDS	25747128	25747385	.	-	0	Parent=Os01t0640400-00
Chr01	irgsp1_rep	CDS	25746669	25747037	.	-	0	Parent=Os01t0640400-00
Chr01	irgsp1_rep	three_prime_UTR	25746656	25746668	.	-	.	Parent=Os01t0640400-00
Chr01	irgsp1_rep	three_prime_UTR	25745235	25745365	.	-	.	Parent=Os01t0640400-00
Chr01	irgsp1_rep	three_prime_UTR	25744765	25745127	.	-	.	Parent=Os01t0640400-00
Chr01	irgsp1_rep	mRNA	25744767	25747925	.	+	.	ID=Os01t0640600-01;Name=Os01t0640600-01;Locus_id=Os01g0640600;Note=Similar to LIMONENE cyclase like protein.;Transcript_evidence=AK069831 (DDBJ%2C Best hit);ORF_evidence=Q1EPA4 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);NIAS_FLcDNA=J023027B09;Expression=AK069831;TENOR=Os01t0640600-01;KEGG=Os01t0640600-01 (EC:2.4.1.224%2C EC:2.4.1.225)
Chr01	irgsp1_rep	five_prime_UTR	25744767	25744796	.	+	.	Parent=Os01t0640600-01
Chr01	irgsp1_rep	CDS	25744797	25745129	.	+	0	Parent=Os01t0640600-01
Chr01	irgsp1_rep	CDS	25745237	25745367	.	+	0	Parent=Os01t0640600-01
Chr01	irgsp1_rep	CDS	25746677	25747022	.	+	1	Parent=Os01t0640600-01
Chr01	irgsp1_rep	CDS	25747108	25747803	.	+	0	Parent=Os01t0640600-01
Chr01	irgsp1_rep	three_prime_UTR	25747804	25747925	.	+	.	Parent=Os01t0640600-01
Chr01	irgsp1_rep	mRNA	25748348	25750451	.	-	.	ID=Os01t0640700-00;Name=Os01t0640700-00;Locus_id=Os01g0640700;Note=Similar to vegetative cell wall protein gp1.;Transcript_evidence=AK334548 (DDBJ);ORF_evidence=C5XEK4 (UniProt);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);TENOR=Os01t0640700-00;KEGG=Os01t0640700-00
Chr01	irgsp1_rep	CDS	25749511	25750451	.	-	0	Parent=Os01t0640700-00
Chr01	irgsp1_rep	CDS	25748709	25748845	.	-	1	Parent=Os01t0640700-00
Chr01	irgsp1_rep	CDS	25748414	25748601	.	-	2	Parent=Os01t0640700-00
Chr01	irgsp1_rep	three_prime_UTR	25748348	25748413	.	-	.	Parent=Os01t0640700-00
Chr01	irgsp1_rep	mRNA	25752298	25755783	.	-	.	ID=Os01t0640800-01;Name=Os01t0640800-01;Locus_id=Os01g0640800;Note=Similar to radical SAM domain-containing protein.;Transcript_evidence=AK065688 (DDBJ%2C Best hit);ORF_evidence=NP_564755.1 (RefSeq);GO=Biological Process: rRNA processing (GO:0006364),Cellular Component: cytoplasm (GO:0005737),Molecular Function: catalytic activity (GO:0003824),Molecular Function: RNA methyltransferase activity (GO:0008173),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=Ribosomal RNA large subunit methyltransferase RlmN%3B (IPR004383),Radical SAM (IPR007197);NIAS_FLcDNA=J013042L10;Expression=AK065688;TENOR=Os01t0640800-01;KEGG=Os01t0640800-01 (EC:2.1.1.-)
Chr01	irgsp1_rep	five_prime_UTR	25755738	25755783	.	-	.	Parent=Os01t0640800-01
Chr01	irgsp1_rep	CDS	25755567	25755737	.	-	0	Parent=Os01t0640800-01
Chr01	irgsp1_rep	CDS	25755367	25755469	.	-	0	Parent=Os01t0640800-01
Chr01	irgsp1_rep	CDS	25754448	25754545	.	-	2	Parent=Os01t0640800-01
Chr01	irgsp1_rep	CDS	25754243	25754373	.	-	0	Parent=Os01t0640800-01
Chr01	irgsp1_rep	CDS	25754039	25754147	.	-	1	Parent=Os01t0640800-01
Chr01	irgsp1_rep	CDS	25753354	25753545	.	-	0	Parent=Os01t0640800-01
Chr01	irgsp1_rep	CDS	25753131	25753267	.	-	0	Parent=Os01t0640800-01
Chr01	irgsp1_rep	CDS	25752542	25752818	.	-	1	Parent=Os01t0640800-01
Chr01	irgsp1_rep	three_prime_UTR	25752298	25752541	.	-	.	Parent=Os01t0640800-01
Chr01	irgsp1_rep	mRNA	25757795	25762187	.	+	.	ID=Os01t0641000-01;Name=Os01t0641000-01;Locus_id=Os01g0641000;Note=Similar to Protein kinase.;Transcript_evidence=AK108130 (DDBJ%2C Best hit);ORF_evidence=B6TE08 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=002-139-D09;Expression=AK108130;TENOR=Os01t0641000-01;KEGG=Os01t0641000-01
Chr01	irgsp1_rep	five_prime_UTR	25757795	25758041	.	+	.	Parent=Os01t0641000-01
Chr01	irgsp1_rep	CDS	25758042	25758369	.	+	0	Parent=Os01t0641000-01
Chr01	irgsp1_rep	CDS	25759793	25759914	.	+	2	Parent=Os01t0641000-01
Chr01	irgsp1_rep	CDS	25760636	25760832	.	+	0	Parent=Os01t0641000-01
Chr01	irgsp1_rep	CDS	25760933	25761107	.	+	1	Parent=Os01t0641000-01
Chr01	irgsp1_rep	CDS	25761418	25761552	.	+	0	Parent=Os01t0641000-01
Chr01	irgsp1_rep	CDS	25761666	25761875	.	+	0	Parent=Os01t0641000-01
Chr01	irgsp1_rep	three_prime_UTR	25761876	25762187	.	+	.	Parent=Os01t0641000-01
Chr01	irgsp1_rep	mRNA	25758466	25759042	.	+	.	ID=Os01t0641050-00;Name=Os01t0641050-00;Locus_id=Os01g0641050;Note=Non-protein coding transcript.;Transcript_evidence=EU942581 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0641050-00
Chr01	irgsp1_rep	exon	25758466	25759042	.	+	.	Parent=Os01t0641050-00
Chr01	irgsp1_rep	mRNA	25762489	25766525	.	+	.	ID=Os01t0641100-01;Name=Os01t0641100-01;Locus_id=Os01g0641100;Note=Similar to HD domain containing protein.;Transcript_evidence=AK243497 (DDBJ%2C Best hit);ORF_evidence=NP_001151059.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphoric diester hydrolase activity (GO:0008081),Molecular Function: metal ion binding (GO:0046872);InterPro=Metal-dependent phosphohydrolase%2C HD domain (IPR003607),Metal-dependent phosphohydrolase%2C HD subdomain (IPR006674),HD domain (IPR023279);NIAS_FLcDNA=J100074E09;TENOR=Os01t0641100-01;KEGG=Os01t0641100-01
Chr01	irgsp1_rep	five_prime_UTR	25762489	25762585	.	+	.	Parent=Os01t0641100-01
Chr01	irgsp1_rep	CDS	25762586	25762867	.	+	0	Parent=Os01t0641100-01
Chr01	irgsp1_rep	CDS	25763269	25763393	.	+	0	Parent=Os01t0641100-01
Chr01	irgsp1_rep	CDS	25763568	25763605	.	+	1	Parent=Os01t0641100-01
Chr01	irgsp1_rep	CDS	25763793	25763903	.	+	2	Parent=Os01t0641100-01
Chr01	irgsp1_rep	CDS	25763995	25764074	.	+	2	Parent=Os01t0641100-01
Chr01	irgsp1_rep	CDS	25765479	25765515	.	+	0	Parent=Os01t0641100-01
Chr01	irgsp1_rep	CDS	25765922	25765963	.	+	2	Parent=Os01t0641100-01
Chr01	irgsp1_rep	CDS	25766047	25766129	.	+	2	Parent=Os01t0641100-01
Chr01	irgsp1_rep	three_prime_UTR	25766130	25766525	.	+	.	Parent=Os01t0641100-01
Chr01	irgsp1_rep	mRNA	25777616	25781934	.	-	.	ID=Os01t0641700-01;Name=Os01t0641700-01;Locus_id=Os01g0641700;Note=Uncharacterised protein family UPF0121 domain containing protein.;Transcript_evidence=AK103294 (DDBJ%2C Best hit);ORF_evidence=longestORF;GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Uncharacterised protein family UPF0121 (IPR005344);NIAS_FLcDNA=J033125A17;Expression=AK103294;TENOR=Os01t0641700-01;KEGG=Os01t0641700-01
Chr01	irgsp1_rep	five_prime_UTR	25781674	25781934	.	-	.	Parent=Os01t0641700-01
Chr01	irgsp1_rep	five_prime_UTR	25780814	25780843	.	-	.	Parent=Os01t0641700-01
Chr01	irgsp1_rep	CDS	25780723	25780813	.	-	0	Parent=Os01t0641700-01
Chr01	irgsp1_rep	CDS	25780528	25780610	.	-	2	Parent=Os01t0641700-01
Chr01	irgsp1_rep	CDS	25779855	25779980	.	-	0	Parent=Os01t0641700-01
Chr01	irgsp1_rep	CDS	25779659	25779776	.	-	0	Parent=Os01t0641700-01
Chr01	irgsp1_rep	CDS	25779482	25779566	.	-	2	Parent=Os01t0641700-01
Chr01	irgsp1_rep	CDS	25778749	25778862	.	-	1	Parent=Os01t0641700-01
Chr01	irgsp1_rep	CDS	25778618	25778657	.	-	1	Parent=Os01t0641700-01
Chr01	irgsp1_rep	CDS	25777874	25778026	.	-	0	Parent=Os01t0641700-01
Chr01	irgsp1_rep	three_prime_UTR	25777616	25777873	.	-	.	Parent=Os01t0641700-01
Chr01	irgsp1_rep	mRNA	25788625	25789657	.	-	.	ID=Os01t0641750-00;Name=Os01t0641750-00;Locus_id=Os01g0641750;Note=Hypothetical protein.;Transcript_evidence=AK361892 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0641750-00
Chr01	irgsp1_rep	five_prime_UTR	25789635	25789657	.	-	.	Parent=Os01t0641750-00
Chr01	irgsp1_rep	CDS	25788666	25789634	.	-	0	Parent=Os01t0641750-00
Chr01	irgsp1_rep	three_prime_UTR	25788625	25788665	.	-	.	Parent=Os01t0641750-00
Chr01	irgsp1_rep	mRNA	25788671	25790988	.	+	.	ID=Os01t0641800-00;Name=Os01t0641800-00;Locus_id=Os01g0641800;Note=Similar to Carbonic anhydrase.;Transcript_evidence=BT060613 (DDBJ);ORF_evidence=B8ACD0 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959);TENOR=Os01t0641800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	25788671	25788701	.	+	.	Parent=Os01t0641800-00
Chr01	irgsp1_rep	CDS	25788702	25789676	.	+	0	Parent=Os01t0641800-00
Chr01	irgsp1_rep	CDS	25790374	25790988	.	+	0	Parent=Os01t0641800-00
Chr01	irgsp1_rep	mRNA	25792699	25797614	.	+	.	ID=Os01t0642000-01;Name=Os01t0642000-01;Locus_id=Os01g0642000;Note=Carboxylesterase%2C type B family protein.;Transcript_evidence=AK110911 (DDBJ%2C Best hit);ORF_evidence=NP_173937.2 (RefSeq);InterPro=Carboxylesterase%2C type B (IPR002018);NIAS_FLcDNA=002-173-C02;Expression=AK110911;TENOR=Os01t0642000-01;KEGG=Os01t0642000-01
Chr01	irgsp1_rep	five_prime_UTR	25792699	25792821	.	+	.	Parent=Os01t0642000-01
Chr01	irgsp1_rep	CDS	25792822	25793048	.	+	0	Parent=Os01t0642000-01
Chr01	irgsp1_rep	CDS	25794292	25794368	.	+	1	Parent=Os01t0642000-01
Chr01	irgsp1_rep	CDS	25794848	25794917	.	+	2	Parent=Os01t0642000-01
Chr01	irgsp1_rep	CDS	25794998	25795078	.	+	1	Parent=Os01t0642000-01
Chr01	irgsp1_rep	CDS	25795158	25795232	.	+	1	Parent=Os01t0642000-01
Chr01	irgsp1_rep	CDS	25795340	25795441	.	+	1	Parent=Os01t0642000-01
Chr01	irgsp1_rep	CDS	25795881	25796018	.	+	1	Parent=Os01t0642000-01
Chr01	irgsp1_rep	CDS	25796911	25796976	.	+	1	Parent=Os01t0642000-01
Chr01	irgsp1_rep	CDS	25797057	25797237	.	+	1	Parent=Os01t0642000-01
Chr01	irgsp1_rep	three_prime_UTR	25797238	25797614	.	+	.	Parent=Os01t0642000-01
Chr01	irgsp1_rep	mRNA	25798769	25800398	.	+	.	ID=Os01t0642100-01;Name=Os01t0642100-01;Locus_id=Os01g0642100;Note=Hypothetical conserved gene.;Transcript_evidence=AK063793 (DDBJ%2C Best hit);ORF_evidence=B9EYA5 (UniProt);NIAS_FLcDNA=001-121-E12;TENOR=Os01t0642100-01;KEGG=Os01t0642100-01
Chr01	irgsp1_rep	CDS	25798769	25798875	.	+	0	Parent=Os01t0642100-01
Chr01	irgsp1_rep	CDS	25799929	25799929	.	+	1	Parent=Os01t0642100-01
Chr01	irgsp1_rep	three_prime_UTR	25799930	25800398	.	+	.	Parent=Os01t0642100-01
Chr01	irgsp1_rep	mRNA	25800668	25801243	.	-	.	ID=Os01t0642200-01;Name=Os01t0642200-01;Locus_id=Os01g0642200;Note=Conserved hypothetical protein.;Transcript_evidence=AK105174 (DDBJ%2C Best hit),AK071521 (DDBJ%2C Best hit);ORF_evidence=B8ACD2 (UniProt);NIAS_FLcDNA=001-104-H01,J023099A13;TENOR=Os01t0642200-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	25801165	25801243	.	-	.	Parent=Os01t0642200-01
Chr01	irgsp1_rep	CDS	25801024	25801164	.	-	0	Parent=Os01t0642200-01
Chr01	irgsp1_rep	CDS	25800870	25800905	.	-	0	Parent=Os01t0642200-01
Chr01	irgsp1_rep	three_prime_UTR	25800668	25800869	.	-	.	Parent=Os01t0642200-01
Chr01	irgsp1_rep	mRNA	25825625	25826696	.	-	.	ID=Os01t0642600-00;Name=Os01t0642600-00;Locus_id=Os01g0642600;Note=Protein of unknown function DUF617%2C plant family protein.;Transcript_evidence=AK364722 (DDBJ);ORF_evidence=NP_001149649.1 (RefSeq);InterPro=Protein of unknown function DUF617%2C plant (IPR006460);TENOR=Os01t0642600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	25826649	25826696	.	-	.	Parent=Os01t0642600-00
Chr01	irgsp1_rep	CDS	25825725	25826648	.	-	0	Parent=Os01t0642600-00
Chr01	irgsp1_rep	three_prime_UTR	25825625	25825724	.	-	.	Parent=Os01t0642600-00
Chr01	irgsp1_rep	mRNA	25836151	25838904	.	+	.	ID=Os01t0642700-00;Name=Os01t0642700-00;Locus_id=Os01g0642700;Note=S-locus glycoprotein domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2WT48 (UniProt);GO=Biological Process: recognition of pollen (GO:0048544),Molecular Function: sugar binding (GO:0005529);InterPro=S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),PAN-2 domain (IPR013227);TENOR=Os01t0642700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	25836151	25836304	.	+	0	Parent=Os01t0642700-00
Chr01	irgsp1_rep	CDS	25837757	25838904	.	+	2	Parent=Os01t0642700-00
Chr01	irgsp1_rep	mRNA	25839729	25839983	.	+	.	ID=Os01t0642801-00;Name=Os01t0642801-00;Locus_id=Os01g0642801;Note=Similar to S-domain class receptor-like kinase3.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001105655.1 (RefSeq);TENOR=Os01t0642801-00
Chr01	irgsp1_rep	CDS	25839729	25839983	.	+	0	Parent=Os01t0642801-00
Chr01	irgsp1_rep	mRNA	25841673	25843494	.	-	.	ID=Os01t0642900-01;Name=Os01t0642900-01;Locus_id=Os01g0642900;Oryzabase Gene Symbol Synonym(s)=SSB;Note=Nucleic acid-binding%2C OB-fold domain containing protein.;Transcript_evidence=AK073560 (DDBJ%2C Best hit),AK063836 (DDBJ%2C Best hit);ORF_evidence=NP_001151839.1 (RefSeq);GO=Biological Process: DNA replication (GO:0006260),Molecular Function: single-stranded DNA binding (GO:0003697);InterPro=Primosome PriB/single-strand DNA-binding (IPR000424),Single-strand DNA-binding (IPR011344),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=J033043K18,001-122-B08;Oryzabase=21313;Expression=AK073560;TENOR=Os01t0642900-01;KEGG=Os01t0642900-01
Chr01	irgsp1_rep	five_prime_UTR	25843462	25843494	.	-	.	Parent=Os01t0642900-01
Chr01	irgsp1_rep	CDS	25843189	25843461	.	-	0	Parent=Os01t0642900-01
Chr01	irgsp1_rep	CDS	25842863	25843089	.	-	0	Parent=Os01t0642900-01
Chr01	irgsp1_rep	CDS	25842244	25842344	.	-	1	Parent=Os01t0642900-01
Chr01	irgsp1_rep	CDS	25841880	25841953	.	-	2	Parent=Os01t0642900-01
Chr01	irgsp1_rep	three_prime_UTR	25841673	25841879	.	-	.	Parent=Os01t0642900-01
Chr01	irgsp1_rep	mRNA	25863717	25868263	.	+	.	ID=Os01t0643300-01;Name=Os01t0643300-01;Locus_id=Os01g0643300;RAP-DB Gene Symbol Synonym(s)=PIN10A%2C PIN3A%2C OsPIN3a%2C OsPIN3t%2C OsPIN10a;RAP-DB Gene Name Synonym(s)=PIN PROTEIN 10A%2C PIN PROTEIN 3A;CGSNL Gene Symbol=PIN10A;CGSNL Gene Name=PIN PROTEIN 10A;Oryzabase Gene Symbol Synonym(s)=PIN3A%2C OsPIN3a%2C OsPIN3t%2C OsPIN10a%2C OsPIN3;Oryzabase Gene Name Synonym(s)=PIN PROTEIN 3A;Note=Auxin efflux carrier protein%2C Auxin transport%2C Drought tolerance;Transcript_evidence=AK101504;ORF_evidence=Q5VP70;GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral component of membrane (GO:0016021);InterPro=Auxin efflux carrier (IPR004776),Auxin efflux carrier%2C plant type (IPR014024);NIAS_FLcDNA=J033044E23;Manual Curation=March 4%2C 2015;Literature_PMID=22882529,19825657,16085936;Oryzabase=8934;Expression=AK101504;TENOR=Os01t0643300-01;KEGG=Os01t0643300-01
Chr01	irgsp1_rep	five_prime_UTR	25863717	25864066	.	+	.	Parent=Os01t0643300-01
Chr01	irgsp1_rep	CDS	25864067	25865186	.	+	0	Parent=Os01t0643300-01
Chr01	irgsp1_rep	CDS	25865289	25865637	.	+	2	Parent=Os01t0643300-01
Chr01	irgsp1_rep	CDS	25866311	25866396	.	+	1	Parent=Os01t0643300-01
Chr01	irgsp1_rep	CDS	25866534	25866691	.	+	2	Parent=Os01t0643300-01
Chr01	irgsp1_rep	CDS	25867781	25867857	.	+	0	Parent=Os01t0643300-01
Chr01	irgsp1_rep	CDS	25867948	25868014	.	+	1	Parent=Os01t0643300-01
Chr01	irgsp1_rep	three_prime_UTR	25868015	25868263	.	+	.	Parent=Os01t0643300-01
Chr01	irgsp1_rep	mRNA	25863960	25868266	.	+	.	ID=Os01t0643300-02;Name=Os01t0643300-02;Locus_id=Os01g0643300;CGSNL Gene Symbol=PIN10A;CGSNL Gene Name=PIN PROTEIN 10A;Oryzabase Gene Symbol Synonym(s)=PIN3A%2C OsPIN3a%2C OsPIN3t%2C OsPIN10a%2C OsPIN3;Oryzabase Gene Name Synonym(s)=PIN PROTEIN 3A;Note=Similar to Auxin efflux carrier protein.;Transcript_evidence=AK063976 (DDBJ%2C Best hit);ORF_evidence=D5A7J0 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Auxin efflux carrier (IPR004776),Auxin efflux carrier%2C plant type (IPR014024);NIAS_FLcDNA=001-124-C02;Oryzabase=8934;Expression=AK063976;TENOR=Os01t0643300-02;KEGG=Os01t0643300-02
Chr01	irgsp1_rep	five_prime_UTR	25863960	25864066	.	+	.	Parent=Os01t0643300-02
Chr01	irgsp1_rep	CDS	25864067	25865186	.	+	0	Parent=Os01t0643300-02
Chr01	irgsp1_rep	CDS	25865289	25865344	.	+	2	Parent=Os01t0643300-02
Chr01	irgsp1_rep	CDS	25865432	25865637	.	+	0	Parent=Os01t0643300-02
Chr01	irgsp1_rep	CDS	25866311	25866396	.	+	1	Parent=Os01t0643300-02
Chr01	irgsp1_rep	CDS	25866534	25866691	.	+	2	Parent=Os01t0643300-02
Chr01	irgsp1_rep	CDS	25867781	25867857	.	+	0	Parent=Os01t0643300-02
Chr01	irgsp1_rep	CDS	25867948	25868014	.	+	1	Parent=Os01t0643300-02
Chr01	irgsp1_rep	three_prime_UTR	25868015	25868266	.	+	.	Parent=Os01t0643300-02
Chr01	irgsp1_rep	mRNA	25864066	25868017	.	-	.	ID=Os01t0643450-00;Name=Os01t0643450-00;Locus_id=Os01g0643450;Note=Hypothetical protein.;Transcript_evidence=tplb0036f07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0643450-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	25867939	25868017	.	-	.	Parent=Os01t0643450-00
Chr01	irgsp1_rep	five_prime_UTR	25867791	25867846	.	-	.	Parent=Os01t0643450-00
Chr01	irgsp1_rep	five_prime_UTR	25866520	25866695	.	-	.	Parent=Os01t0643450-00
Chr01	irgsp1_rep	five_prime_UTR	25866309	25866392	.	-	.	Parent=Os01t0643450-00
Chr01	irgsp1_rep	five_prime_UTR	25865342	25865631	.	-	.	Parent=Os01t0643450-00
Chr01	irgsp1_rep	five_prime_UTR	25864591	25865175	.	-	.	Parent=Os01t0643450-00
Chr01	irgsp1_rep	CDS	25864087	25864590	.	-	0	Parent=Os01t0643450-00
Chr01	irgsp1_rep	three_prime_UTR	25864066	25864086	.	-	.	Parent=Os01t0643450-00
Chr01	irgsp1_rep	mRNA	25880204	25883718	.	-	.	ID=Os01t0643600-01;Name=Os01t0643600-01;Locus_id=Os01g0643600;RAP-DB Gene Symbol Synonym(s)=SGD2%2C OsHOX3%2C SGD2/OsHOX3;RAP-DB Gene Name Synonym(s)=Small Grain and Dwarf 2;CGSNL Gene Symbol=SGD2;CGSNL Gene Name=SMALL GRAIN AND DWARF 2;Oryzabase Gene Symbol Synonym(s)=HOX3%2C Oshox3%2C OsHox3;Oryzabase Gene Name Synonym(s)=rice homeobox gene 3%2C Homeobox-leucine zipper protein HOX3%2C Homeodomain transcription factor HOX3%2C HD-ZIP protein HOX3%2C Small Grain and Dwarf 2;Note=HD-Zip II family transcription factor%2C Regulation of plant development%2C Modulation of gibberellin biosynthesis;Transcript_evidence=AF145727 (IR58);ORF_evidence=Q0JKX1;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox-like domain superfamily (IPR009057),Homeobox domain (IPR001356),Leucine zipper%2C homeobox-associated (IPR003106),Homeobox%2C conserved site (IPR017970);Manual Curation=September 19%2C 2019;Literature_PMID=31521223,10732669;Oryzabase=6154;Expression=AF145727;TENOR=Os01t0643600-00;KEGG=Os01t0643600-00;Subcellular location=nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	25883650	25883718	.	-	.	Parent=Os01t0643600-01
Chr01	irgsp1_rep	CDS	25883577	25883649	.	-	0	Parent=Os01t0643600-01
Chr01	irgsp1_rep	CDS	25883056	25883288	.	-	2	Parent=Os01t0643600-01
Chr01	irgsp1_rep	CDS	25882035	25882114	.	-	0	Parent=Os01t0643600-01
Chr01	irgsp1_rep	CDS	25880600	25880903	.	-	1	Parent=Os01t0643600-01
Chr01	irgsp1_rep	three_prime_UTR	25880204	25880599	.	-	.	Parent=Os01t0643600-01
Chr01	irgsp1_rep	mRNA	25880629	25884230	.	+	.	ID=Os01t0643666-00;Name=Os01t0643666-00;Locus_id=Os01g0643666;Note=Non-protein coding transcript.;Transcript_evidence=EU949719 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0643666-00
Chr01	irgsp1_rep	exon	25880629	25880774	.	+	.	Parent=Os01t0643666-00
Chr01	irgsp1_rep	exon	25883548	25883831	.	+	.	Parent=Os01t0643666-00
Chr01	irgsp1_rep	exon	25884067	25884230	.	+	.	Parent=Os01t0643666-00
Chr01	irgsp1_rep	mRNA	25917636	25922976	.	-	.	ID=Os01t0643800-01;Name=Os01t0643800-01;Locus_id=Os01g0643800;Oryzabase Gene Symbol Synonym(s)=OsMPK16%2C MPK16;Oryzabase Gene Name Synonym(s)=mitogen-activated protein kinase 16;Note=Similar to Mitogen-activated protein kinase.;Transcript_evidence=AK069424 (DDBJ%2C Best hit);ORF_evidence=Q5VP69 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: MAP kinase activity (GO:0004707),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),MAP kinase%2C conserved site (IPR003527),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023019B07;Oryzabase=22921;Expression=AK069424;TENOR=Os01t0643800-01;KEGG=Os01t0643800-01
Chr01	irgsp1_rep	five_prime_UTR	25922822	25922976	.	-	.	Parent=Os01t0643800-01
Chr01	irgsp1_rep	CDS	25922807	25922821	.	-	0	Parent=Os01t0643800-01
Chr01	irgsp1_rep	CDS	25922170	25922706	.	-	0	Parent=Os01t0643800-01
Chr01	irgsp1_rep	CDS	25921998	25922057	.	-	0	Parent=Os01t0643800-01
Chr01	irgsp1_rep	CDS	25921607	25921756	.	-	0	Parent=Os01t0643800-01
Chr01	irgsp1_rep	CDS	25919958	25920113	.	-	0	Parent=Os01t0643800-01
Chr01	irgsp1_rep	CDS	25919723	25919860	.	-	0	Parent=Os01t0643800-01
Chr01	irgsp1_rep	CDS	25919567	25919640	.	-	0	Parent=Os01t0643800-01
Chr01	irgsp1_rep	CDS	25919273	25919375	.	-	1	Parent=Os01t0643800-01
Chr01	irgsp1_rep	CDS	25918701	25918898	.	-	0	Parent=Os01t0643800-01
Chr01	irgsp1_rep	CDS	25917954	25918028	.	-	0	Parent=Os01t0643800-01
Chr01	irgsp1_rep	three_prime_UTR	25917636	25917953	.	-	.	Parent=Os01t0643800-01
Chr01	irgsp1_rep	mRNA	25919273	25922712	.	+	.	ID=Os01t0643825-00;Name=Os01t0643825-00;Locus_id=Os01g0643825;Note=Hypothetical protein.;Transcript_evidence=tplb0059e09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0643825-00
Chr01	irgsp1_rep	five_prime_UTR	25919273	25919429	.	+	.	Parent=Os01t0643825-00
Chr01	irgsp1_rep	five_prime_UTR	25919707	25919852	.	+	.	Parent=Os01t0643825-00
Chr01	irgsp1_rep	five_prime_UTR	25919946	25920122	.	+	.	Parent=Os01t0643825-00
Chr01	irgsp1_rep	five_prime_UTR	25921618	25921663	.	+	.	Parent=Os01t0643825-00
Chr01	irgsp1_rep	CDS	25921664	25921753	.	+	0	Parent=Os01t0643825-00
Chr01	irgsp1_rep	CDS	25921996	25922043	.	+	0	Parent=Os01t0643825-00
Chr01	irgsp1_rep	CDS	25922156	25922305	.	+	0	Parent=Os01t0643825-00
Chr01	irgsp1_rep	three_prime_UTR	25922306	25922712	.	+	.	Parent=Os01t0643825-00
Chr01	irgsp1_rep	mRNA	25923454	25924149	.	+	.	ID=Os01t0643900-01;Name=Os01t0643900-01;Locus_id=Os01g0643900;Note=Oleosin family protein.;Transcript_evidence=AK108288 (DDBJ%2C Best hit);ORF_evidence=B8ACE2 (UniProt);GO=Cellular Component: monolayer-surrounded lipid storage body (GO:0012511),Cellular Component: integral to membrane (GO:0016021);InterPro=Oleosin (IPR000136);NIAS_FLcDNA=002-141-D10;Expression=AK108288;TENOR=Os01t0643900-01;KEGG=Os01t0643900-01
Chr01	irgsp1_rep	five_prime_UTR	25923454	25923505	.	+	.	Parent=Os01t0643900-01
Chr01	irgsp1_rep	CDS	25923506	25924012	.	+	0	Parent=Os01t0643900-01
Chr01	irgsp1_rep	three_prime_UTR	25924013	25924149	.	+	.	Parent=Os01t0643900-01
Chr01	irgsp1_rep	mRNA	25926370	25928206	.	+	.	ID=Os01t0644000-01;Name=Os01t0644000-01;Locus_id=Os01g0644000;Note=Twin-arginine translocation pathway signal domain containing protein.;Transcript_evidence=AK063835 (DDBJ%2C Best hit);ORF_evidence=NP_001151674.1 (RefSeq);NIAS_FLcDNA=001-122-B07;Expression=AK063835;TENOR=Os01t0644000-01;KEGG=Os01t0644000-01
Chr01	irgsp1_rep	five_prime_UTR	25926370	25926446	.	+	.	Parent=Os01t0644000-01
Chr01	irgsp1_rep	CDS	25926447	25926566	.	+	0	Parent=Os01t0644000-01
Chr01	irgsp1_rep	CDS	25927768	25928040	.	+	0	Parent=Os01t0644000-01
Chr01	irgsp1_rep	three_prime_UTR	25928041	25928206	.	+	.	Parent=Os01t0644000-01
Chr01	irgsp1_rep	mRNA	25926439	25928206	.	+	.	ID=Os01t0644000-02;Name=Os01t0644000-02;Locus_id=Os01g0644000;Note=Twin-arginine translocation pathway signal domain containing protein.;Transcript_evidence=AK122159 (DDBJ%2C Best hit);ORF_evidence=NP_001151674.1 (RefSeq);NIAS_FLcDNA=J033147D17;Expression=AK122159;TENOR=Os01t0644000-02;KEGG=Os01t0644000-02
Chr01	irgsp1_rep	five_prime_UTR	25926439	25926446	.	+	.	Parent=Os01t0644000-02
Chr01	irgsp1_rep	CDS	25926447	25926566	.	+	0	Parent=Os01t0644000-02
Chr01	irgsp1_rep	CDS	25927768	25928040	.	+	0	Parent=Os01t0644000-02
Chr01	irgsp1_rep	three_prime_UTR	25928041	25928206	.	+	.	Parent=Os01t0644000-02
Chr01	irgsp1_rep	mRNA	25931149	25931730	.	-	.	ID=Os01t0644200-01;Name=Os01t0644200-01;Locus_id=Os01g0644200;Note=Similar to Little protein 1.;Transcript_evidence=AK063634 (DDBJ%2C Best hit);ORF_evidence=B4UWC1 (UniProt);NIAS_FLcDNA=001-118-F12;Expression=AK063634;TENOR=Os01t0644200-01;KEGG=Os01t0644200-01
Chr01	irgsp1_rep	five_prime_UTR	25931600	25931730	.	-	.	Parent=Os01t0644200-01
Chr01	irgsp1_rep	CDS	25931375	25931599	.	-	0	Parent=Os01t0644200-01
Chr01	irgsp1_rep	three_prime_UTR	25931149	25931374	.	-	.	Parent=Os01t0644200-01
Chr01	irgsp1_rep	mRNA	25933618	25934890	.	+	.	ID=Os01t0644400-01;Name=Os01t0644400-01;Locus_id=Os01g0644400;Note=Hypothetical gene.;Transcript_evidence=AK243423 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100067B08;TENOR=Os01t0644400-01;KEGG=Os01t0644400-01
Chr01	irgsp1_rep	five_prime_UTR	25933618	25933728	.	+	.	Parent=Os01t0644400-01
Chr01	irgsp1_rep	CDS	25933729	25934058	.	+	0	Parent=Os01t0644400-01
Chr01	irgsp1_rep	three_prime_UTR	25934059	25934128	.	+	.	Parent=Os01t0644400-01
Chr01	irgsp1_rep	three_prime_UTR	25934345	25934890	.	+	.	Parent=Os01t0644400-01
Chr01	irgsp1_rep	mRNA	25933610	25934883	.	-	.	ID=Os01t0644500-00;Name=Os01t0644500-00;Locus_id=Os01g0644500;Note=Hypothetical conserved gene.;Transcript_evidence=CT834892 (DDBJ%2C Best hit);ORF_evidence=Q9ASB8 (UniProt);TENOR=Os01t0644500-00;KEGG=Os01t0644500-00
Chr01	irgsp1_rep	five_prime_UTR	25934882	25934883	.	-	.	Parent=Os01t0644500-00
Chr01	irgsp1_rep	CDS	25934345	25934881	.	-	0	Parent=Os01t0644500-00
Chr01	irgsp1_rep	CDS	25933844	25934128	.	-	0	Parent=Os01t0644500-00
Chr01	irgsp1_rep	three_prime_UTR	25933610	25933843	.	-	.	Parent=Os01t0644500-00
Chr01	irgsp1_rep	mRNA	25949366	25950192	.	+	.	ID=Os01t0644600-00;Name=Os01t0644600-00;Locus_id=Os01g0644600;Oryzabase Gene Name Synonym(s)=Extensin family protein;Note=Glutelin family protein.;Transcript_evidence=CU405709 (DDBJ%2C Best hit);ORF_evidence=NP_001043698.1 (RefSeq);Oryzabase=21943;TENOR=Os01t0644600-00;KEGG=Os01t0644600-00
Chr01	irgsp1_rep	five_prime_UTR	25949366	25949474	.	+	.	Parent=Os01t0644600-00
Chr01	irgsp1_rep	CDS	25949475	25949882	.	+	0	Parent=Os01t0644600-00
Chr01	irgsp1_rep	three_prime_UTR	25949883	25950192	.	+	.	Parent=Os01t0644600-00
Chr01	irgsp1_rep	mRNA	25957753	25958568	.	+	.	ID=Os01t0644900-01;Name=Os01t0644900-01;Locus_id=Os01g0644900;Note=Conserved hypothetical protein.;Transcript_evidence=AK106910 (DDBJ%2C Best hit);ORF_evidence=A2WT57 (UniProt);NIAS_FLcDNA=002-119-A06;Expression=AK106910;TENOR=Os01t0644900-01;KEGG=Os01t0644900-01
Chr01	irgsp1_rep	five_prime_UTR	25957753	25957835	.	+	.	Parent=Os01t0644900-01
Chr01	irgsp1_rep	CDS	25957836	25958366	.	+	0	Parent=Os01t0644900-01
Chr01	irgsp1_rep	three_prime_UTR	25958367	25958568	.	+	.	Parent=Os01t0644900-01
Chr01	irgsp1_rep	mRNA	25959883	25961440	.	-	.	ID=Os01t0645000-01;Name=Os01t0645000-01;Locus_id=Os01g0645000;CGSNL Gene Symbol=C3H9;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 9;Oryzabase Gene Symbol Synonym(s)=OsC3H9;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 9;Note=Similar to TIS11 protein (dTIS11).;Transcript_evidence=AK108658 (DDBJ%2C Best hit);ORF_evidence=A2WT58 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=002-148-E11;Oryzabase=8635;Expression=AK108658;TENOR=Os01t0645000-01;KEGG=Os01t0645000-01
Chr01	irgsp1_rep	five_prime_UTR	25961398	25961440	.	-	.	Parent=Os01t0645000-01
Chr01	irgsp1_rep	CDS	25961374	25961397	.	-	0	Parent=Os01t0645000-01
Chr01	irgsp1_rep	CDS	25960515	25961189	.	-	0	Parent=Os01t0645000-01
Chr01	irgsp1_rep	CDS	25960103	25960423	.	-	0	Parent=Os01t0645000-01
Chr01	irgsp1_rep	three_prime_UTR	25959883	25960102	.	-	.	Parent=Os01t0645000-01
Chr01	irgsp1_rep	mRNA	25973499	25974780	.	+	.	ID=Os01t0645200-01;Name=Os01t0645200-01;Locus_id=Os01g0645200;Note=Hypothetical conserved gene.;Transcript_evidence=AK111326 (DDBJ%2C Best hit);ORF_evidence=B8ACE5 (UniProt);NIAS_FLcDNA=002-181-D10;Expression=AK111326;TENOR=Os01t0645200-01;KEGG=Os01t0645200-01
Chr01	irgsp1_rep	five_prime_UTR	25973499	25973776	.	+	.	Parent=Os01t0645200-01
Chr01	irgsp1_rep	CDS	25973777	25974310	.	+	0	Parent=Os01t0645200-01
Chr01	irgsp1_rep	three_prime_UTR	25974311	25974780	.	+	.	Parent=Os01t0645200-01
Chr01	irgsp1_rep	mRNA	25973568	25980398	.	+	.	ID=Os01t0645200-02;Name=Os01t0645200-02;Locus_id=Os01g0645200;Note=Bile acid:sodium symporter domain containing protein.;Transcript_evidence=AK069337 (DDBJ%2C Best hit);ORF_evidence=NP_850089.1 (RefSeq);GO=Biological Process: sodium ion transport (GO:0006814),Cellular Component: membrane (GO:0016020),Molecular Function: bile acid:sodium symporter activity (GO:0008508);InterPro=Bile acid:sodium symporter (IPR002657);NIAS_FLcDNA=J023014F07;Expression=AK069337;TENOR=Os01t0645200-02;KEGG=Os01t0645200-02
Chr01	irgsp1_rep	five_prime_UTR	25973568	25973862	.	+	.	Parent=Os01t0645200-02
Chr01	irgsp1_rep	CDS	25973863	25973977	.	+	0	Parent=Os01t0645200-02
Chr01	irgsp1_rep	CDS	25974072	25974183	.	+	2	Parent=Os01t0645200-02
Chr01	irgsp1_rep	CDS	25975530	25975653	.	+	1	Parent=Os01t0645200-02
Chr01	irgsp1_rep	CDS	25975778	25975819	.	+	0	Parent=Os01t0645200-02
Chr01	irgsp1_rep	CDS	25975914	25976027	.	+	0	Parent=Os01t0645200-02
Chr01	irgsp1_rep	CDS	25976135	25976197	.	+	0	Parent=Os01t0645200-02
Chr01	irgsp1_rep	CDS	25977033	25977160	.	+	0	Parent=Os01t0645200-02
Chr01	irgsp1_rep	CDS	25978490	25978571	.	+	1	Parent=Os01t0645200-02
Chr01	irgsp1_rep	CDS	25978664	25978715	.	+	0	Parent=Os01t0645200-02
Chr01	irgsp1_rep	CDS	25978807	25978904	.	+	2	Parent=Os01t0645200-02
Chr01	irgsp1_rep	CDS	25979137	25979298	.	+	0	Parent=Os01t0645200-02
Chr01	irgsp1_rep	CDS	25979776	25979865	.	+	0	Parent=Os01t0645200-02
Chr01	irgsp1_rep	CDS	25979992	25980069	.	+	0	Parent=Os01t0645200-02
Chr01	irgsp1_rep	three_prime_UTR	25980070	25980398	.	+	.	Parent=Os01t0645200-02
Chr01	irgsp1_rep	mRNA	25973809	25980371	.	+	.	ID=Os01t0645200-03;Name=Os01t0645200-03;Locus_id=Os01g0645200;Note=Bile acid:sodium symporter domain containing protein.;Transcript_evidence=AK104932 (DDBJ%2C Best hit);ORF_evidence=NP_850089.1 (RefSeq);GO=Biological Process: sodium ion transport (GO:0006814),Cellular Component: membrane (GO:0016020),Molecular Function: bile acid:sodium symporter activity (GO:0008508);InterPro=Bile acid:sodium symporter (IPR002657);NIAS_FLcDNA=001-047-B10;Expression=AK104932;TENOR=Os01t0645200-03;KEGG=Os01t0645200-03
Chr01	irgsp1_rep	five_prime_UTR	25973809	25973862	.	+	.	Parent=Os01t0645200-03
Chr01	irgsp1_rep	CDS	25973863	25973977	.	+	0	Parent=Os01t0645200-03
Chr01	irgsp1_rep	CDS	25974072	25974183	.	+	2	Parent=Os01t0645200-03
Chr01	irgsp1_rep	CDS	25975530	25975653	.	+	1	Parent=Os01t0645200-03
Chr01	irgsp1_rep	CDS	25975778	25975819	.	+	0	Parent=Os01t0645200-03
Chr01	irgsp1_rep	CDS	25975914	25976027	.	+	0	Parent=Os01t0645200-03
Chr01	irgsp1_rep	CDS	25976135	25976197	.	+	0	Parent=Os01t0645200-03
Chr01	irgsp1_rep	CDS	25977033	25977160	.	+	0	Parent=Os01t0645200-03
Chr01	irgsp1_rep	CDS	25978490	25978571	.	+	1	Parent=Os01t0645200-03
Chr01	irgsp1_rep	CDS	25978664	25978715	.	+	0	Parent=Os01t0645200-03
Chr01	irgsp1_rep	CDS	25978807	25978904	.	+	2	Parent=Os01t0645200-03
Chr01	irgsp1_rep	CDS	25979137	25979298	.	+	0	Parent=Os01t0645200-03
Chr01	irgsp1_rep	CDS	25979776	25979865	.	+	0	Parent=Os01t0645200-03
Chr01	irgsp1_rep	CDS	25979992	25980069	.	+	0	Parent=Os01t0645200-03
Chr01	irgsp1_rep	three_prime_UTR	25980070	25980371	.	+	.	Parent=Os01t0645200-03
Chr01	irgsp1_rep	mRNA	25994669	25996837	.	+	.	ID=Os01t0645400-01;Name=Os01t0645400-01;Locus_id=Os01g0645400;RAP-DB Gene Symbol Synonym(s)=YUCCA1%2C OsYUCCA1%2C OsYUC1;RAP-DB Gene Name Synonym(s)=YUCCA-LIKE GENE 1%2C (YUCCA-like gene);CGSNL Gene Symbol=YUCCA1;CGSNL Gene Name=YUCCA-LIKE GENE 1;Oryzabase Gene Symbol Synonym(s)=OsYUCCA1%2C OsYUC1%2C YUC1;Oryzabase Gene Name Synonym(s)=(YUCCA-like gene);Note=Flavin monooxygenase-like enzyme %2C Auxin biosynthesis;Transcript_evidence=AK105488 (DDBJ);ORF_evidence=Q5VRB9 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: N%2CN-dimethylaniline monooxygenase activity (GO:0004499),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=Pyridine nucleotide-disulphide oxidoreductase%2C class-II (IPR000103),FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR013027),NAD(P)-binding domain (IPR016040),Flavin monooxygenase-like (IPR020946);NIAS_FLcDNA=001-127-B10;Manual Curation=June 28%2C 2010;Literature_PMID=17220367;Oryzabase=7438;TENOR=Os01t0645400-01
Chr01	irgsp1_rep	five_prime_UTR	25994669	25994730	.	+	.	Parent=Os01t0645400-01
Chr01	irgsp1_rep	CDS	25994731	25995360	.	+	0	Parent=Os01t0645400-01
Chr01	irgsp1_rep	CDS	25995737	25995985	.	+	0	Parent=Os01t0645400-01
Chr01	irgsp1_rep	CDS	25996244	25996459	.	+	0	Parent=Os01t0645400-01
Chr01	irgsp1_rep	three_prime_UTR	25996460	25996837	.	+	.	Parent=Os01t0645400-01
Chr01	irgsp1_rep	mRNA	25994731	25996756	.	+	.	ID=Os01t0645400-02;Name=Os01t0645400-02;Locus_id=Os01g0645400;RAP-DB Gene Symbol Synonym(s)=YUCCA1%2C OsYUCCA1;RAP-DB Gene Name Synonym(s)=YUCCA-LIKE GENE 1%2C YUCCA-like gene 1;CGSNL Gene Symbol=YUCCA1;CGSNL Gene Name=YUCCA-LIKE GENE 1;Oryzabase Gene Symbol Synonym(s)=OsYUCCA1%2C OsYUC1%2C YUC1;Oryzabase Gene Name Synonym(s)=(YUCCA-like gene);Note=Flavin monooxygenase-like enzyme %2C Auxin biosynthesis;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: N%2CN-dimethylaniline monooxygenase activity (GO:0004499),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=Pyridine nucleotide-disulphide oxidoreductase%2C class-II (IPR000103),FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR013027),Flavin monooxygenase-like (IPR020946);Manual Curation=June 28%2C 2010;Literature_PMID=17220367;Oryzabase=7438;TENOR=Os01t0645400-02
Chr01	irgsp1_rep	CDS	25994731	25995360	.	+	0	Parent=Os01t0645400-02
Chr01	irgsp1_rep	CDS	25995737	25995985	.	+	0	Parent=Os01t0645400-02
Chr01	irgsp1_rep	CDS	25996244	25996366	.	+	0	Parent=Os01t0645400-02
Chr01	irgsp1_rep	CDS	25996538	25996756	.	+	0	Parent=Os01t0645400-02
Chr01	irgsp1_rep	mRNA	26004527	26011193	.	-	.	ID=Os01t0645650-01;Name=Os01t0645650-01;Locus_id=Os01g0645650;Note=Hypothetical protein.;Transcript_evidence=AK288400 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J090029J21;TENOR=Os01t0645650-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	26010758	26011193	.	-	.	Parent=Os01t0645650-01
Chr01	irgsp1_rep	CDS	26010542	26010757	.	-	0	Parent=Os01t0645650-01
Chr01	irgsp1_rep	three_prime_UTR	26004527	26010541	.	-	.	Parent=Os01t0645650-01
Chr01	irgsp1_rep	mRNA	26033145	26034815	.	-	.	ID=Os01t0645900-01;Name=Os01t0645900-01;Locus_id=Os01g0645900;CGSNL Gene Symbol=SULTR5%3B1;CGSNL Gene Name=SULPHATE TRANSPORTER 5%3B1;Oryzabase Gene Symbol Synonym(s)=OsSultr5%3B1%2C OsSul5%3B1;Oryzabase Gene Name Synonym(s)=sulphate transporter 5%3B1;Note=Similar to sulfate transporter.;Transcript_evidence=AK100928 (DDBJ%2C Best hit);ORF_evidence=NP_001150854.1 (RefSeq);NIAS_FLcDNA=J023135A05;Oryzabase=9327;Expression=AK100928;TENOR=Os01t0645900-01;KEGG=Os01t0645900-01
Chr01	irgsp1_rep	five_prime_UTR	26034756	26034815	.	-	.	Parent=Os01t0645900-01
Chr01	irgsp1_rep	CDS	26033364	26034755	.	-	0	Parent=Os01t0645900-01
Chr01	irgsp1_rep	three_prime_UTR	26033145	26033363	.	-	.	Parent=Os01t0645900-01
Chr01	irgsp1_rep	mRNA	26036642	26039083	.	+	.	ID=Os01t0646000-01;Name=Os01t0646000-01;Locus_id=Os01g0646000;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK108570 (DDBJ%2C Best hit);ORF_evidence=A2ZVZ1 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=002-145-D11;Expression=AK108570;TENOR=Os01t0646000-01;KEGG=Os01t0646000-01
Chr01	irgsp1_rep	five_prime_UTR	26036642	26036853	.	+	.	Parent=Os01t0646000-01
Chr01	irgsp1_rep	CDS	26036854	26037594	.	+	0	Parent=Os01t0646000-01
Chr01	irgsp1_rep	CDS	26038515	26038532	.	+	0	Parent=Os01t0646000-01
Chr01	irgsp1_rep	three_prime_UTR	26038533	26039083	.	+	.	Parent=Os01t0646000-01
Chr01	irgsp1_rep	mRNA	26044168	26045843	.	-	.	ID=Os01t0646300-01;Name=Os01t0646300-01;Locus_id=Os01g0646300;CGSNL Gene Symbol=SLRL1;CGSNL Gene Name=SLENDER RICE LIKE 1;Oryzabase Gene Symbol Synonym(s)=OsSLRL1%2C OsGAI%2C OsSLRL%2C OsGRAS-1%2C OsGRAS1%2C GAI%2C SLRL%2C GRAS-1%2C GRAS1;Oryzabase Gene Name Synonym(s)=SLR1-like1%2C GRAS protein 1;Note=Similar to RGA2 protein.;Transcript_evidence=AK242412 (DDBJ%2C Best hit);ORF_evidence=Q6S5L6 (UniProt);InterPro=Transcription factor GRAS (IPR005202);NIAS_FLcDNA=J080076J05;Oryzabase=7135;TENOR=Os01t0646300-01;KEGG=Os01t0646300-01
Chr01	irgsp1_rep	five_prime_UTR	26045720	26045843	.	-	.	Parent=Os01t0646300-01
Chr01	irgsp1_rep	CDS	26044232	26045719	.	-	0	Parent=Os01t0646300-01
Chr01	irgsp1_rep	three_prime_UTR	26044168	26044231	.	-	.	Parent=Os01t0646300-01
Chr01	irgsp1_rep	mRNA	26051925	26053759	.	+	.	ID=Os01t0646400-01;Name=Os01t0646400-01;Locus_id=Os01g0646400;Note=Non-protein coding transcript.;Transcript_evidence=AK062494 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-103-H11;TENOR=Os01t0646400-01
Chr01	irgsp1_rep	exon	26051925	26052112	.	+	.	Parent=Os01t0646400-01
Chr01	irgsp1_rep	exon	26052213	26052291	.	+	.	Parent=Os01t0646400-01
Chr01	irgsp1_rep	exon	26053504	26053759	.	+	.	Parent=Os01t0646400-01
Chr01	irgsp1_rep	mRNA	26060892	26064410	.	-	.	ID=Os01t0646700-01;Name=Os01t0646700-01;Locus_id=Os01g0646700;Note=Similar to OSIGBa0105P02.4 protein.;Transcript_evidence=AK073060 (DDBJ%2C Best hit);ORF_evidence=Q01KU1 (UniProt);NIAS_FLcDNA=J033021G01;TENOR=Os01t0646700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	26064410	26064410	.	-	.	Parent=Os01t0646700-01
Chr01	irgsp1_rep	CDS	26064095	26064409	.	-	0	Parent=Os01t0646700-01
Chr01	irgsp1_rep	three_prime_UTR	26062014	26064094	.	-	.	Parent=Os01t0646700-01
Chr01	irgsp1_rep	three_prime_UTR	26061748	26061903	.	-	.	Parent=Os01t0646700-01
Chr01	irgsp1_rep	three_prime_UTR	26061595	26061664	.	-	.	Parent=Os01t0646700-01
Chr01	irgsp1_rep	three_prime_UTR	26060892	26061149	.	-	.	Parent=Os01t0646700-01
Chr01	irgsp1_rep	mRNA	26061385	26063202	.	-	.	ID=Os01t0646700-02;Name=Os01t0646700-02;Locus_id=Os01g0646700;Note=Similar to OSIGBa0105P02.4 protein.;Transcript_evidence=AK073367 (DDBJ%2C Best hit);ORF_evidence=Q01KU1 (UniProt);InterPro=DNA helicase PIF1%2C ATP-dependent (IPR010285);NIAS_FLcDNA=J033025M17;TENOR=Os01t0646700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	26063202	26063202	.	-	.	Parent=Os01t0646700-02
Chr01	irgsp1_rep	CDS	26062626	26063201	.	-	0	Parent=Os01t0646700-02
Chr01	irgsp1_rep	three_prime_UTR	26062014	26062625	.	-	.	Parent=Os01t0646700-02
Chr01	irgsp1_rep	three_prime_UTR	26061748	26061900	.	-	.	Parent=Os01t0646700-02
Chr01	irgsp1_rep	three_prime_UTR	26061385	26061664	.	-	.	Parent=Os01t0646700-02
Chr01	irgsp1_rep	mRNA	26061366	26062097	.	-	.	ID=Os01t0646700-03;Name=Os01t0646700-03;Locus_id=Os01g0646700;Note=Hypothetical conserved gene.;Transcript_evidence=AK063841 (DDBJ%2C Best hit);ORF_evidence=B9EYB6 (UniProt);NIAS_FLcDNA=001-122-C01;Expression=AK063841;TENOR=Os01t0646700-03;KEGG=Os01t0646700-03
Chr01	irgsp1_rep	five_prime_UTR	26062014	26062097	.	-	.	Parent=Os01t0646700-03
Chr01	irgsp1_rep	five_prime_UTR	26061781	26061903	.	-	.	Parent=Os01t0646700-03
Chr01	irgsp1_rep	CDS	26061748	26061780	.	-	0	Parent=Os01t0646700-03
Chr01	irgsp1_rep	CDS	26061551	26061664	.	-	0	Parent=Os01t0646700-03
Chr01	irgsp1_rep	three_prime_UTR	26061366	26061550	.	-	.	Parent=Os01t0646700-03
Chr01	irgsp1_rep	mRNA	26065944	26071738	.	-	.	ID=Os01t0646800-01;Name=Os01t0646800-01;Locus_id=Os01g0646800;Note=Conserved hypothetical protein.;Transcript_evidence=AK101336 (DDBJ%2C Best hit);ORF_evidence=B8A6W1 (UniProt);NIAS_FLcDNA=J033034J09;TENOR=Os01t0646800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	26070860	26071738	.	-	.	Parent=Os01t0646800-01
Chr01	irgsp1_rep	five_prime_UTR	26070661	26070745	.	-	.	Parent=Os01t0646800-01
Chr01	irgsp1_rep	five_prime_UTR	26070418	26070482	.	-	.	Parent=Os01t0646800-01
Chr01	irgsp1_rep	five_prime_UTR	26069343	26069442	.	-	.	Parent=Os01t0646800-01
Chr01	irgsp1_rep	five_prime_UTR	26069100	26069155	.	-	.	Parent=Os01t0646800-01
Chr01	irgsp1_rep	five_prime_UTR	26068663	26068710	.	-	.	Parent=Os01t0646800-01
Chr01	irgsp1_rep	five_prime_UTR	26068443	26068587	.	-	.	Parent=Os01t0646800-01
Chr01	irgsp1_rep	five_prime_UTR	26068093	26068341	.	-	.	Parent=Os01t0646800-01
Chr01	irgsp1_rep	five_prime_UTR	26067916	26068005	.	-	.	Parent=Os01t0646800-01
Chr01	irgsp1_rep	five_prime_UTR	26067678	26067832	.	-	.	Parent=Os01t0646800-01
Chr01	irgsp1_rep	five_prime_UTR	26067481	26067583	.	-	.	Parent=Os01t0646800-01
Chr01	irgsp1_rep	CDS	26066779	26067480	.	-	0	Parent=Os01t0646800-01
Chr01	irgsp1_rep	three_prime_UTR	26066455	26066778	.	-	.	Parent=Os01t0646800-01
Chr01	irgsp1_rep	three_prime_UTR	26065944	26066371	.	-	.	Parent=Os01t0646800-01
Chr01	irgsp1_rep	mRNA	26075030	26076818	.	+	.	ID=Os01t0647000-01;Name=Os01t0647000-01;Locus_id=Os01g0647000;Oryzabase Gene Symbol Synonym(s)=OsFbox031%2C OsFbox31%2C Os_F0326;Oryzabase Gene Name Synonym(s)=F-box protein 31;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK101723 (DDBJ%2C Best hit);ORF_evidence=NP_001149398.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810);NIAS_FLcDNA=J033061B09;Oryzabase=16832;Expression=AK101723;TENOR=Os01t0647000-01;KEGG=Os01t0647000-01
Chr01	irgsp1_rep	five_prime_UTR	26075030	26075083	.	+	.	Parent=Os01t0647000-01
Chr01	irgsp1_rep	CDS	26075084	26075655	.	+	0	Parent=Os01t0647000-01
Chr01	irgsp1_rep	CDS	26075817	26076501	.	+	1	Parent=Os01t0647000-01
Chr01	irgsp1_rep	three_prime_UTR	26076502	26076818	.	+	.	Parent=Os01t0647000-01
Chr01	irgsp1_rep	mRNA	26075806	26076876	.	+	.	ID=Os01t0647000-02;Name=Os01t0647000-02;Locus_id=Os01g0647000;Oryzabase Gene Symbol Synonym(s)=OsFbox031%2C OsFbox31%2C Os_F0326;Oryzabase Gene Name Synonym(s)=F-box protein 31;Note=Similar to F-box domain containing protein.;Transcript_evidence=AK061541 (DDBJ%2C Best hit);ORF_evidence=NP_001149398.1 (RefSeq);NIAS_FLcDNA=006-310-G10;Oryzabase=16832;Expression=AK061541;TENOR=Os01t0647000-02;KEGG=Os01t0647000-02
Chr01	irgsp1_rep	five_prime_UTR	26075806	26075808	.	+	.	Parent=Os01t0647000-02
Chr01	irgsp1_rep	CDS	26075809	26076501	.	+	0	Parent=Os01t0647000-02
Chr01	irgsp1_rep	three_prime_UTR	26076502	26076876	.	+	.	Parent=Os01t0647000-02
Chr01	irgsp1_rep	mRNA	26078129	26082198	.	-	.	ID=Os01t0647100-01;Name=Os01t0647100-01;Locus_id=Os01g0647100;CGSNL Gene Symbol=NTT1;CGSNL Gene Name=PLASTIDIC NUCLEOTIDE TRANSPORT PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsNTT1;Note=ADP/ATP carrier protein family protein.;Transcript_evidence=AK102610 (DDBJ%2C Best hit),AK069624 (DDBJ%2C Best hit);ORF_evidence=Q2TJ67 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: integral to membrane (GO:0016021),Molecular Function: ATP:ADP antiporter activity (GO:0005471),Molecular Function: ATP binding (GO:0005524);InterPro=ADP/ATP carrier protein (IPR004667);NIAS_FLcDNA=J033099C15,J023025F15;Oryzabase=8725;Expression=AK102610;TENOR=Os01t0647100-01;KEGG=Os01t0647100-01
Chr01	irgsp1_rep	five_prime_UTR	26082118	26082198	.	-	.	Parent=Os01t0647100-01
Chr01	irgsp1_rep	CDS	26081311	26082117	.	-	0	Parent=Os01t0647100-01
Chr01	irgsp1_rep	CDS	26079746	26080015	.	-	0	Parent=Os01t0647100-01
Chr01	irgsp1_rep	CDS	26079520	26079663	.	-	0	Parent=Os01t0647100-01
Chr01	irgsp1_rep	CDS	26079084	26079431	.	-	0	Parent=Os01t0647100-01
Chr01	irgsp1_rep	CDS	26078276	26078635	.	-	0	Parent=Os01t0647100-01
Chr01	irgsp1_rep	three_prime_UTR	26078129	26078275	.	-	.	Parent=Os01t0647100-01
Chr01	irgsp1_rep	mRNA	26078097	26082210	.	+	.	ID=Os01t0647150-00;Name=Os01t0647150-00;Locus_id=Os01g0647150;Note=Hypothetical protein.;Transcript_evidence=tplb0029e11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0647150-00
Chr01	irgsp1_rep	five_prime_UTR	26078097	26078633	.	+	.	Parent=Os01t0647150-00
Chr01	irgsp1_rep	five_prime_UTR	26079082	26079431	.	+	.	Parent=Os01t0647150-00
Chr01	irgsp1_rep	five_prime_UTR	26079520	26079659	.	+	.	Parent=Os01t0647150-00
Chr01	irgsp1_rep	five_prime_UTR	26079742	26080015	.	+	.	Parent=Os01t0647150-00
Chr01	irgsp1_rep	five_prime_UTR	26081311	26081722	.	+	.	Parent=Os01t0647150-00
Chr01	irgsp1_rep	CDS	26081723	26082210	.	+	0	Parent=Os01t0647150-00
Chr01	irgsp1_rep	mRNA	26086062	26088337	.	-	.	ID=Os01t0647200-01;Name=Os01t0647200-01;Locus_id=Os01g0647200;CGSNL Gene Symbol=IMA1;Oryzabase Gene Symbol Synonym(s)=OsIMA1;Note=Hypothetical conserved gene.;Transcript_evidence=AK068661 (DDBJ%2C Best hit),AK068403 (DDBJ%2C Best hit),AK119691 (DDBJ%2C Best hit);ORF_evidence=A6MZQ3 (UniProt);NIAS_FLcDNA=J013164G06,J013147D17,002-157-B08;Oryzabase=23720;Expression=AK068661;TENOR=Os01t0647200-01;KEGG=Os01t0647200-01
Chr01	irgsp1_rep	five_prime_UTR	26088193	26088337	.	-	.	Parent=Os01t0647200-01
Chr01	irgsp1_rep	CDS	26088028	26088192	.	-	0	Parent=Os01t0647200-01
Chr01	irgsp1_rep	three_prime_UTR	26086062	26088027	.	-	.	Parent=Os01t0647200-01
Chr01	irgsp1_rep	mRNA	26087584	26087917	.	-	.	ID=Os01t0647200-04;Name=Os01t0647200-04;Locus_id=Os01g0647200;CGSNL Gene Symbol=IMA1;Oryzabase Gene Symbol Synonym(s)=OsIMA1;Note=Non-protein coding transcript.;Transcript_evidence=AK059212 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-024-C01;Oryzabase=23720;TENOR=Os01t0647200-04
Chr01	irgsp1_rep	exon	26087584	26087917	.	-	.	Parent=Os01t0647200-04
Chr01	irgsp1_rep	mRNA	26106836	26111089	.	+	.	ID=Os01t0647700-01;Name=Os01t0647700-01;Locus_id=Os01g0647700;Note=Epoxide hydrolase family protein.;Transcript_evidence=AK100691 (DDBJ%2C Best hit);ORF_evidence=NP_173002.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Epoxide hydrolase-like (IPR000639);NIAS_FLcDNA=J023114F24;Expression=AK100691;TENOR=Os01t0647700-01;KEGG=Os01t0647700-01
Chr01	irgsp1_rep	five_prime_UTR	26106836	26107168	.	+	.	Parent=Os01t0647700-01
Chr01	irgsp1_rep	CDS	26107169	26107436	.	+	0	Parent=Os01t0647700-01
Chr01	irgsp1_rep	CDS	26107975	26108282	.	+	2	Parent=Os01t0647700-01
Chr01	irgsp1_rep	CDS	26108425	26109141	.	+	0	Parent=Os01t0647700-01
Chr01	irgsp1_rep	CDS	26109630	26109758	.	+	0	Parent=Os01t0647700-01
Chr01	irgsp1_rep	CDS	26109886	26110089	.	+	0	Parent=Os01t0647700-01
Chr01	irgsp1_rep	CDS	26110394	26110594	.	+	0	Parent=Os01t0647700-01
Chr01	irgsp1_rep	CDS	26110729	26110854	.	+	0	Parent=Os01t0647700-01
Chr01	irgsp1_rep	three_prime_UTR	26110855	26111089	.	+	.	Parent=Os01t0647700-01
Chr01	irgsp1_rep	mRNA	26111955	26114140	.	-	.	ID=Os01t0647800-01;Name=Os01t0647800-01;Locus_id=Os01g0647800;Note=Conserved hypothetical protein.;Transcript_evidence=AK061246 (DDBJ%2C Best hit);ORF_evidence=Q9FWH2 (UniProt);NIAS_FLcDNA=006-211-D12;TENOR=Os01t0647800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	26113492	26114140	.	-	.	Parent=Os01t0647800-01
Chr01	irgsp1_rep	five_prime_UTR	26112777	26112897	.	-	.	Parent=Os01t0647800-01
Chr01	irgsp1_rep	five_prime_UTR	26112494	26112496	.	-	.	Parent=Os01t0647800-01
Chr01	irgsp1_rep	CDS	26112137	26112493	.	-	0	Parent=Os01t0647800-01
Chr01	irgsp1_rep	three_prime_UTR	26111955	26112136	.	-	.	Parent=Os01t0647800-01
Chr01	irgsp1_rep	mRNA	26115235	26119289	.	-	.	ID=Os01t0647850-01;Name=Os01t0647850-01;Locus_id=Os01g0647850;Note=Hypothetical conserved gene.;Transcript_evidence=AK287859 (DDBJ%2C Best hit);ORF_evidence=Q84ZC3 (UniProt);NIAS_FLcDNA=J065197J06;TENOR=Os01t0647850-01;KEGG=Os01t0647850-01
Chr01	irgsp1_rep	five_prime_UTR	26119289	26119289	.	-	.	Parent=Os01t0647850-01
Chr01	irgsp1_rep	CDS	26118809	26119288	.	-	0	Parent=Os01t0647850-01
Chr01	irgsp1_rep	CDS	26118410	26118418	.	-	0	Parent=Os01t0647850-01
Chr01	irgsp1_rep	three_prime_UTR	26118337	26118409	.	-	.	Parent=Os01t0647850-01
Chr01	irgsp1_rep	three_prime_UTR	26115235	26117702	.	-	.	Parent=Os01t0647850-01
Chr01	irgsp1_rep	mRNA	26119741	26126165	.	-	.	ID=Os01t0648000-01;Name=Os01t0648000-01;Locus_id=Os01g0648000;RAP-DB Gene Symbol Synonym(s)=OsAKT1%2C Os-AKT1;RAP-DB Gene Name Synonym(s)=salt-sensitive K1 uptake channel OsAKT1 K+ channel alpha subunit;CGSNL Gene Symbol=AKT1;Oryzabase Gene Symbol Synonym(s)=OsAKT1%2C Os-AKT1;Oryzabase Gene Name Synonym(s)=salt-sensitive K1 uptake channel OsAKT1%2C K+ channel alpha subunit;Note=Potassium channel%2C Potassium uptake%2C Salt stress tolerance;Transcript_evidence=Inferred from literature;ORF_evidence=Q0JKV1;GO=Biological Process: ion transport (GO:0006811),Biological Process: potassium ion transport (GO:0006813),Biological Process: transmembrane transport (GO:0055085),Molecular Function: ion channel activity (GO:0005216),Molecular Function: voltage-gated potassium channel activity (GO:0005249),Molecular Function: protein binding (GO:0005515),Cellular Component: membrane (GO:0016020);InterPro=Potassium channel%2C voltage-dependent%2C EAG/ELK/ERG (IPR003938),Ion transport domain (IPR005821),RmlC-like jelly roll fold (IPR014710),Cyclic nucleotide-binding-like (IPR018490),Cyclic nucleotide-binding domain (IPR000595),Ankyrin repeat-containing domain (IPR020683),Potassium channel%2C plant-type (IPR021789),Ankyrin repeat (IPR002110);Manual Curation=November 10%2C 2014;Literature_PMID=25096783,15599592;Oryzabase=10369;TENOR=Os01t0648000-01
Chr01	irgsp1_rep	five_prime_UTR	26125897	26126165	.	-	.	Parent=Os01t0648000-01
Chr01	irgsp1_rep	CDS	26125592	26125896	.	-	0	Parent=Os01t0648000-01
Chr01	irgsp1_rep	CDS	26123764	26124129	.	-	1	Parent=Os01t0648000-01
Chr01	irgsp1_rep	CDS	26123527	26123584	.	-	1	Parent=Os01t0648000-01
Chr01	irgsp1_rep	CDS	26123124	26123441	.	-	0	Parent=Os01t0648000-01
Chr01	irgsp1_rep	CDS	26122778	26123023	.	-	0	Parent=Os01t0648000-01
Chr01	irgsp1_rep	CDS	26122584	26122682	.	-	0	Parent=Os01t0648000-01
Chr01	irgsp1_rep	CDS	26122391	26122424	.	-	0	Parent=Os01t0648000-01
Chr01	irgsp1_rep	CDS	26122121	26122305	.	-	2	Parent=Os01t0648000-01
Chr01	irgsp1_rep	CDS	26121496	26121693	.	-	0	Parent=Os01t0648000-01
Chr01	irgsp1_rep	CDS	26121323	26121398	.	-	0	Parent=Os01t0648000-01
Chr01	irgsp1_rep	CDS	26120053	26120975	.	-	2	Parent=Os01t0648000-01
Chr01	irgsp1_rep	three_prime_UTR	26119741	26120052	.	-	.	Parent=Os01t0648000-01
Chr01	irgsp1_rep	mRNA	26119880	26125883	.	+	.	ID=Os01t0648225-00;Name=Os01t0648225-00;Locus_id=Os01g0648225;Note=Hypothetical protein.;Transcript_evidence=tplb0022c02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0648225-00
Chr01	irgsp1_rep	five_prime_UTR	26119880	26120106	.	+	.	Parent=Os01t0648225-00
Chr01	irgsp1_rep	CDS	26120107	26120529	.	+	0	Parent=Os01t0648225-00
Chr01	irgsp1_rep	three_prime_UTR	26120530	26120973	.	+	.	Parent=Os01t0648225-00
Chr01	irgsp1_rep	three_prime_UTR	26121311	26121400	.	+	.	Parent=Os01t0648225-00
Chr01	irgsp1_rep	three_prime_UTR	26121499	26121669	.	+	.	Parent=Os01t0648225-00
Chr01	irgsp1_rep	three_prime_UTR	26122098	26122320	.	+	.	Parent=Os01t0648225-00
Chr01	irgsp1_rep	three_prime_UTR	26122561	26122699	.	+	.	Parent=Os01t0648225-00
Chr01	irgsp1_rep	three_prime_UTR	26122793	26123015	.	+	.	Parent=Os01t0648225-00
Chr01	irgsp1_rep	three_prime_UTR	26123117	26123434	.	+	.	Parent=Os01t0648225-00
Chr01	irgsp1_rep	three_prime_UTR	26123519	26123593	.	+	.	Parent=Os01t0648225-00
Chr01	irgsp1_rep	three_prime_UTR	26123775	26124117	.	+	.	Parent=Os01t0648225-00
Chr01	irgsp1_rep	three_prime_UTR	26125579	26125883	.	+	.	Parent=Os01t0648225-00
Chr01	irgsp1_rep	mRNA	26163786	26166472	.	+	.	ID=Os01t0648500-01;Name=Os01t0648500-01;Locus_id=Os01g0648500;CGSNL Gene Symbol=DLN15;CGSNL Gene Name=DLN REPRESSOR 15;Oryzabase Gene Symbol Synonym(s)=OsDLN15;Oryzabase Gene Name Synonym(s)=DLN repressor 15%2C DLN motif protein 15;Note=Similar to Transcription initiation factor TFIID subunit 7.;Transcript_evidence=AK241160 (DDBJ%2C Best hit);ORF_evidence=B6UGL3 (UniProt);GO=Biological Process: transcription initiation from RNA polymerase II promoter (GO:0006367),Cellular Component: transcription factor TFIID complex (GO:0005669);InterPro=TAFII55 protein%2C conserved region (IPR006751);NIAS_FLcDNA=J065115F03;Oryzabase=23157;TENOR=Os01t0648500-01;KEGG=Os01t0648500-01
Chr01	irgsp1_rep	five_prime_UTR	26163786	26163888	.	+	.	Parent=Os01t0648500-01
Chr01	irgsp1_rep	CDS	26163889	26164015	.	+	0	Parent=Os01t0648500-01
Chr01	irgsp1_rep	CDS	26165002	26165135	.	+	2	Parent=Os01t0648500-01
Chr01	irgsp1_rep	CDS	26165213	26165332	.	+	0	Parent=Os01t0648500-01
Chr01	irgsp1_rep	CDS	26165416	26165476	.	+	0	Parent=Os01t0648500-01
Chr01	irgsp1_rep	CDS	26165964	26166112	.	+	2	Parent=Os01t0648500-01
Chr01	irgsp1_rep	three_prime_UTR	26166113	26166472	.	+	.	Parent=Os01t0648500-01
Chr01	irgsp1_rep	mRNA	26170046	26171566	.	+	.	ID=Os01t0648600-00;Name=Os01t0648600-00;Locus_id=Os01g0648600;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=FP092643 (DDBJ);ORF_evidence=A2ZW00 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os01t0648600-00
Chr01	irgsp1_rep	CDS	26170046	26171566	.	+	0	Parent=Os01t0648600-00
Chr01	irgsp1_rep	mRNA	26173196	26177230	.	-	.	ID=Os01t0648700-01;Name=Os01t0648700-01;Locus_id=Os01g0648700;Note=Bromodomain containing protein.;Transcript_evidence=AK111374 (DDBJ%2C Best hit);ORF_evidence=Q94JA6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Bromodomain (IPR001487);NIAS_FLcDNA=002-182-A09;Expression=AK111374;TENOR=Os01t0648700-01;KEGG=Os01t0648700-01
Chr01	irgsp1_rep	five_prime_UTR	26177186	26177230	.	-	.	Parent=Os01t0648700-01
Chr01	irgsp1_rep	CDS	26176478	26177185	.	-	0	Parent=Os01t0648700-01
Chr01	irgsp1_rep	CDS	26173582	26173590	.	-	0	Parent=Os01t0648700-01
Chr01	irgsp1_rep	three_prime_UTR	26173196	26173581	.	-	.	Parent=Os01t0648700-01
Chr01	irgsp1_rep	mRNA	26183883	26190120	.	+	.	ID=Os01t0649000-01;Name=Os01t0649000-01;Locus_id=Os01g0649000;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK073564 (DDBJ%2C Best hit);ORF_evidence=A2WT83 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),Small-subunit processome%2C Utp12 (IPR007148),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40 repeat%2C subgroup (IPR019781);NIAS_FLcDNA=J033043C02;Expression=AK073564;TENOR=Os01t0649000-01;KEGG=Os01t0649000-01
Chr01	irgsp1_rep	five_prime_UTR	26183883	26183989	.	+	.	Parent=Os01t0649000-01
Chr01	irgsp1_rep	CDS	26183990	26184088	.	+	0	Parent=Os01t0649000-01
Chr01	irgsp1_rep	CDS	26184741	26184845	.	+	0	Parent=Os01t0649000-01
Chr01	irgsp1_rep	CDS	26184928	26185034	.	+	0	Parent=Os01t0649000-01
Chr01	irgsp1_rep	CDS	26185758	26185912	.	+	1	Parent=Os01t0649000-01
Chr01	irgsp1_rep	CDS	26186432	26186520	.	+	2	Parent=Os01t0649000-01
Chr01	irgsp1_rep	CDS	26186645	26187167	.	+	0	Parent=Os01t0649000-01
Chr01	irgsp1_rep	CDS	26187860	26187934	.	+	2	Parent=Os01t0649000-01
Chr01	irgsp1_rep	CDS	26188094	26188314	.	+	2	Parent=Os01t0649000-01
Chr01	irgsp1_rep	CDS	26188949	26189031	.	+	0	Parent=Os01t0649000-01
Chr01	irgsp1_rep	CDS	26189118	26189229	.	+	1	Parent=Os01t0649000-01
Chr01	irgsp1_rep	CDS	26189498	26189572	.	+	0	Parent=Os01t0649000-01
Chr01	irgsp1_rep	CDS	26189638	26189817	.	+	0	Parent=Os01t0649000-01
Chr01	irgsp1_rep	three_prime_UTR	26189818	26190120	.	+	.	Parent=Os01t0649000-01
Chr01	irgsp1_rep	mRNA	26190754	26194403	.	+	.	ID=Os01t0649100-01;Name=Os01t0649100-01;Locus_id=Os01g0649100;Oryzabase Gene Symbol Synonym(s)=OsmMDH%2C mMDH;Oryzabase Gene Name Synonym(s)=mitochondrial malate dehydrogenase%2C mitochondrial MDH;Note=Malate dehydrogenase.;Transcript_evidence=AK071699 (DDBJ%2C Best hit);ORF_evidence=Q7FSL4 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: malate metabolic process (GO:0006108),Biological Process: cellular carbohydrate metabolic process (GO:0044262),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: malate dehydrogenase activity (GO:0016615),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: L-malate dehydrogenase activity (GO:0030060);InterPro=Lactate/malate dehydrogenase%2C N-terminal (IPR001236),Malate dehydrogenase%2C active site (IPR001252),L-lactate/malate dehydrogenase (IPR001557),Malate dehydrogenase%2C type 1 (IPR010097),Lactate dehydrogenase/glycoside hydrolase%2C family 4%2C C-terminal (IPR015955),NAD(P)-binding domain (IPR016040),Lactate/malate dehydrogenase%2C C-terminal (IPR022383);NIAS_FLcDNA=J023108E15;Oryzabase=20180;Expression=AK071699;TENOR=Os01t0649100-01;KEGG=Os01t0649100-01 (EC:1.1.1.37)
Chr01	irgsp1_rep	five_prime_UTR	26190754	26190883	.	+	.	Parent=Os01t0649100-01
Chr01	irgsp1_rep	CDS	26190884	26191120	.	+	0	Parent=Os01t0649100-01
Chr01	irgsp1_rep	CDS	26191226	26191399	.	+	0	Parent=Os01t0649100-01
Chr01	irgsp1_rep	CDS	26191883	26192051	.	+	0	Parent=Os01t0649100-01
Chr01	irgsp1_rep	CDS	26192155	26192216	.	+	2	Parent=Os01t0649100-01
Chr01	irgsp1_rep	CDS	26192798	26192922	.	+	0	Parent=Os01t0649100-01
Chr01	irgsp1_rep	CDS	26193027	26193144	.	+	1	Parent=Os01t0649100-01
Chr01	irgsp1_rep	CDS	26194052	26194189	.	+	0	Parent=Os01t0649100-01
Chr01	irgsp1_rep	three_prime_UTR	26194190	26194403	.	+	.	Parent=Os01t0649100-01
Chr01	irgsp1_rep	mRNA	26190826	26194387	.	+	.	ID=Os01t0649100-02;Name=Os01t0649100-02;Locus_id=Os01g0649100;Oryzabase Gene Symbol Synonym(s)=OsmMDH%2C mMDH;Oryzabase Gene Name Synonym(s)=mitochondrial malate dehydrogenase%2C mitochondrial MDH;Note=Malate dehydrogenase.;Transcript_evidence=AK104770 (DDBJ%2C Best hit);ORF_evidence=Q7FSL4 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: malate metabolic process (GO:0006108),Biological Process: cellular carbohydrate metabolic process (GO:0044262),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: malate dehydrogenase activity (GO:0016615),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: L-malate dehydrogenase activity (GO:0030060);InterPro=Lactate/malate dehydrogenase%2C N-terminal (IPR001236),Malate dehydrogenase%2C active site (IPR001252),L-lactate/malate dehydrogenase (IPR001557),Malate dehydrogenase%2C type 1 (IPR010097),Lactate dehydrogenase/glycoside hydrolase%2C family 4%2C C-terminal (IPR015955),NAD(P)-binding domain (IPR016040),Lactate/malate dehydrogenase%2C C-terminal (IPR022383);NIAS_FLcDNA=001-039-A07;Oryzabase=20180;Expression=AK104770;TENOR=Os01t0649100-02;KEGG=Os01t0649100-02 (EC:1.1.1.37)
Chr01	irgsp1_rep	five_prime_UTR	26190826	26190883	.	+	.	Parent=Os01t0649100-02
Chr01	irgsp1_rep	CDS	26190884	26191120	.	+	0	Parent=Os01t0649100-02
Chr01	irgsp1_rep	CDS	26191226	26191399	.	+	0	Parent=Os01t0649100-02
Chr01	irgsp1_rep	CDS	26191883	26192051	.	+	0	Parent=Os01t0649100-02
Chr01	irgsp1_rep	CDS	26192155	26192216	.	+	2	Parent=Os01t0649100-02
Chr01	irgsp1_rep	CDS	26192798	26192922	.	+	0	Parent=Os01t0649100-02
Chr01	irgsp1_rep	CDS	26193027	26193144	.	+	1	Parent=Os01t0649100-02
Chr01	irgsp1_rep	CDS	26194052	26194189	.	+	0	Parent=Os01t0649100-02
Chr01	irgsp1_rep	three_prime_UTR	26194190	26194387	.	+	.	Parent=Os01t0649100-02
Chr01	irgsp1_rep	mRNA	26200285	26201321	.	+	.	ID=Os01t0649200-01;Name=Os01t0649200-01;Locus_id=Os01g0649200;CGSNL Gene Symbol=GELP18;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 18;Oryzabase Gene Symbol Synonym(s)=OsGELP18%2C OsGELP18a%2C OsGELP18b;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 18;Note=Similar to Esterase.;Transcript_evidence=AK105142 (DDBJ%2C Best hit);ORF_evidence=B6TAP7 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=001-103-A07;Oryzabase=10968;TENOR=Os01t0649200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	26200285	26200285	.	+	.	Parent=Os01t0649200-01
Chr01	irgsp1_rep	CDS	26200286	26200478	.	+	0	Parent=Os01t0649200-01
Chr01	irgsp1_rep	CDS	26200975	26201255	.	+	2	Parent=Os01t0649200-01
Chr01	irgsp1_rep	three_prime_UTR	26201256	26201321	.	+	.	Parent=Os01t0649200-01
Chr01	irgsp1_rep	mRNA	26202814	26206936	.	+	.	ID=Os01t0649400-00;Name=Os01t0649400-00;Locus_id=Os01g0649400;CGSNL Gene Symbol=GELP19;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 19;Oryzabase Gene Symbol Synonym(s)=OsGELP19;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 19;Note=Similar to Esterase.;Transcript_evidence=BT067902 (DDBJ);ORF_evidence=B6TAP7 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);Oryzabase=10969;TENOR=Os01t0649400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	26202814	26202862	.	+	.	Parent=Os01t0649400-00
Chr01	irgsp1_rep	CDS	26202863	26203088	.	+	0	Parent=Os01t0649400-00
Chr01	irgsp1_rep	CDS	26203207	26203428	.	+	2	Parent=Os01t0649400-00
Chr01	irgsp1_rep	CDS	26205779	26205927	.	+	2	Parent=Os01t0649400-00
Chr01	irgsp1_rep	CDS	26206028	26206304	.	+	0	Parent=Os01t0649400-00
Chr01	irgsp1_rep	CDS	26206636	26206916	.	+	2	Parent=Os01t0649400-00
Chr01	irgsp1_rep	three_prime_UTR	26206917	26206936	.	+	.	Parent=Os01t0649400-00
Chr01	irgsp1_rep	mRNA	26212312	26212771	.	-	.	ID=Os01t0649566-00;Name=Os01t0649566-00;Locus_id=Os01g0649566;Note=Conserved hypothetical protein.;Transcript_evidence=AK372466 (DDBJ);ORF_evidence=Q6K2H9 (UniProt);TENOR=Os01t0649566-00
Chr01	irgsp1_rep	CDS	26212418	26212771	.	-	0	Parent=Os01t0649566-00
Chr01	irgsp1_rep	three_prime_UTR	26212312	26212417	.	-	.	Parent=Os01t0649566-00
Chr01	irgsp1_rep	mRNA	26218334	26222970	.	-	.	ID=Os01t0649732-00;Name=Os01t0649732-00;Locus_id=Os01g0649732;Note=Hypothetical protein.;Transcript_evidence=EU949155 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0649732-00
Chr01	irgsp1_rep	five_prime_UTR	26222969	26222970	.	-	.	Parent=Os01t0649732-00
Chr01	irgsp1_rep	CDS	26222778	26222968	.	-	0	Parent=Os01t0649732-00
Chr01	irgsp1_rep	CDS	26218334	26218502	.	-	1	Parent=Os01t0649732-00
Chr01	irgsp1_rep	mRNA	26222617	26225117	.	+	.	ID=Os01t0649900-01;Name=Os01t0649900-01;Locus_id=Os01g0649900;CGSNL Gene Symbol=GELP20;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 20;Oryzabase Gene Symbol Synonym(s)=OsGELP20%2C OsGELP20a%2C OsGELP20b%2C OsGELP20c;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 20;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK068077 (DDBJ%2C Best hit);ORF_evidence=B6TAP7 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=J013135A09;Oryzabase=10970;Expression=AK068077;TENOR=Os01t0649900-01;KEGG=Os01t0649900-01
Chr01	irgsp1_rep	five_prime_UTR	26222617	26222695	.	+	.	Parent=Os01t0649900-01
Chr01	irgsp1_rep	CDS	26222696	26222966	.	+	0	Parent=Os01t0649900-01
Chr01	irgsp1_rep	CDS	26223097	26223321	.	+	2	Parent=Os01t0649900-01
Chr01	irgsp1_rep	CDS	26223841	26223989	.	+	2	Parent=Os01t0649900-01
Chr01	irgsp1_rep	CDS	26224095	26224371	.	+	0	Parent=Os01t0649900-01
Chr01	irgsp1_rep	CDS	26224698	26224978	.	+	2	Parent=Os01t0649900-01
Chr01	irgsp1_rep	three_prime_UTR	26224979	26225117	.	+	.	Parent=Os01t0649900-01
Chr01	irgsp1_rep	mRNA	26226577	26231030	.	-	.	ID=Os01t0649950-00;Name=Os01t0649950-00;Locus_id=Os01g0649950;Note=Similar to H0814G11.9 protein.;Transcript_evidence=EU949155 (DDBJ);ORF_evidence=Q00RN1 (UniProt);TENOR=Os01t0649950-00
Chr01	irgsp1_rep	five_prime_UTR	26231026	26231030	.	-	.	Parent=Os01t0649950-00
Chr01	irgsp1_rep	CDS	26230832	26231025	.	-	0	Parent=Os01t0649950-00
Chr01	irgsp1_rep	CDS	26226577	26226757	.	-	1	Parent=Os01t0649950-00
Chr01	irgsp1_rep	mRNA	26230738	26234611	.	+	.	ID=Os01t0650000-01;Name=Os01t0650000-01;Locus_id=Os01g0650000;Note=Similar to esterase.;Transcript_evidence=AK072891 (DDBJ%2C Best hit);ORF_evidence=B6TAP7 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=J023147C03;Expression=AK072891;TENOR=Os01t0650000-01;KEGG=Os01t0650000-01
Chr01	irgsp1_rep	CDS	26230738	26231136	.	+	0	Parent=Os01t0650000-01
Chr01	irgsp1_rep	three_prime_UTR	26231137	26231359	.	+	.	Parent=Os01t0650000-01
Chr01	irgsp1_rep	three_prime_UTR	26231667	26234611	.	+	.	Parent=Os01t0650000-01
Chr01	irgsp1_rep	mRNA	26230740	26231908	.	+	.	ID=Os01t0650000-02;Name=Os01t0650000-02;Locus_id=Os01g0650000;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK062640 (DDBJ%2C Best hit);ORF_evidence=B6TAP7 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=001-105-D07;Expression=AK062640;TENOR=Os01t0650000-02;KEGG=Os01t0650000-02
Chr01	irgsp1_rep	five_prime_UTR	26230740	26230740	.	+	.	Parent=Os01t0650000-02
Chr01	irgsp1_rep	CDS	26230741	26231020	.	+	0	Parent=Os01t0650000-02
Chr01	irgsp1_rep	CDS	26231133	26231351	.	+	2	Parent=Os01t0650000-02
Chr01	irgsp1_rep	CDS	26231667	26231698	.	+	2	Parent=Os01t0650000-02
Chr01	irgsp1_rep	three_prime_UTR	26231699	26231908	.	+	.	Parent=Os01t0650000-02
Chr01	irgsp1_rep	mRNA	26235768	26238284	.	+	.	ID=Os01t0650100-01;Name=Os01t0650100-01;Locus_id=Os01g0650100;Note=Similar to Esterase.;Transcript_evidence=AK063873 (DDBJ%2C Best hit);ORF_evidence=B6TAP7 (UniProt);NIAS_FLcDNA=001-122-E11;TENOR=Os01t0650100-01;KEGG=Os01t0650100-01
Chr01	irgsp1_rep	five_prime_UTR	26235768	26235768	.	+	.	Parent=Os01t0650100-01
Chr01	irgsp1_rep	CDS	26235769	26235877	.	+	0	Parent=Os01t0650100-01
Chr01	irgsp1_rep	CDS	26237664	26237929	.	+	2	Parent=Os01t0650100-01
Chr01	irgsp1_rep	three_prime_UTR	26237930	26238284	.	+	.	Parent=Os01t0650100-01
Chr01	irgsp1_rep	mRNA	26249386	26273949	.	+	.	ID=Os01t0650200-01;Name=Os01t0650200-01;Locus_id=Os01g0650200;CGSNL Gene Symbol=GELP21;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 21;Oryzabase Gene Symbol Synonym(s)=OsGELP21%2C OsGELP21a%2C OsGELP21b%2C OsGELP21c;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 21;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK064049 (DDBJ%2C Best hit);ORF_evidence=B6TAP7 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=001-125-E02;Oryzabase=10971;Expression=AK064049;TENOR=Os01t0650200-01;KEGG=Os01t0650200-01
Chr01	irgsp1_rep	five_prime_UTR	26249386	26249406	.	+	.	Parent=Os01t0650200-01
Chr01	irgsp1_rep	CDS	26249407	26249725	.	+	0	Parent=Os01t0650200-01
Chr01	irgsp1_rep	CDS	26249831	26250049	.	+	2	Parent=Os01t0650200-01
Chr01	irgsp1_rep	CDS	26262911	26262965	.	+	2	Parent=Os01t0650200-01
Chr01	irgsp1_rep	CDS	26272131	26272281	.	+	1	Parent=Os01t0650200-01
Chr01	irgsp1_rep	CDS	26272786	26272929	.	+	0	Parent=Os01t0650200-01
Chr01	irgsp1_rep	three_prime_UTR	26272930	26273062	.	+	.	Parent=Os01t0650200-01
Chr01	irgsp1_rep	three_prime_UTR	26273539	26273949	.	+	.	Parent=Os01t0650200-01
Chr01	irgsp1_rep	mRNA	26249415	26274184	.	+	.	ID=Os01t0650200-02;Name=Os01t0650200-02;Locus_id=Os01g0650200;CGSNL Gene Symbol=GELP21;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 21;Oryzabase Gene Symbol Synonym(s)=OsGELP21%2C OsGELP21a%2C OsGELP21b%2C OsGELP21c;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 21;Note=Similar to Esterase.;Transcript_evidence=AK102591 (DDBJ%2C Best hit);ORF_evidence=B6TAP7 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=J033098F21;Oryzabase=10971;TENOR=Os01t0650200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	26249415	26249439	.	+	.	Parent=Os01t0650200-02
Chr01	irgsp1_rep	CDS	26249440	26249725	.	+	0	Parent=Os01t0650200-02
Chr01	irgsp1_rep	CDS	26249831	26250049	.	+	2	Parent=Os01t0650200-02
Chr01	irgsp1_rep	CDS	26262911	26262965	.	+	2	Parent=Os01t0650200-02
Chr01	irgsp1_rep	CDS	26272131	26272320	.	+	1	Parent=Os01t0650200-02
Chr01	irgsp1_rep	three_prime_UTR	26272321	26273062	.	+	.	Parent=Os01t0650200-02
Chr01	irgsp1_rep	three_prime_UTR	26273539	26274184	.	+	.	Parent=Os01t0650200-02
Chr01	irgsp1_rep	mRNA	26270036	26273929	.	+	.	ID=Os01t0650200-03;Name=Os01t0650200-03;Locus_id=Os01g0650200;CGSNL Gene Symbol=GELP21;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 21;Oryzabase Gene Symbol Synonym(s)=OsGELP21%2C OsGELP21a%2C OsGELP21b%2C OsGELP21c;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 21;Note=Similar to esterase.;Transcript_evidence=AK066857 (DDBJ%2C Best hit);ORF_evidence=B6TAP7 (UniProt);NIAS_FLcDNA=J013081E07;Oryzabase=10971;Expression=AK066857;TENOR=Os01t0650200-03;KEGG=Os01t0650200-03
Chr01	irgsp1_rep	five_prime_UTR	26270036	26272065	.	+	.	Parent=Os01t0650200-03
Chr01	irgsp1_rep	CDS	26272066	26272320	.	+	0	Parent=Os01t0650200-03
Chr01	irgsp1_rep	three_prime_UTR	26272321	26273929	.	+	.	Parent=Os01t0650200-03
Chr01	irgsp1_rep	mRNA	26267753	26268020	.	+	.	ID=Os01t0650501-00;Name=Os01t0650501-00;Locus_id=Os01g0650501;Note=Non-protein coding transcript.;Transcript_evidence=EU942775 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0650501-00
Chr01	irgsp1_rep	exon	26267753	26268020	.	+	.	Parent=Os01t0650501-00
Chr01	irgsp1_rep	mRNA	26278076	26280346	.	-	.	ID=Os01t0650700-01;Name=Os01t0650700-01;Locus_id=Os01g0650700;Note=Transposase%2C Ptta/En/Spm%2C plant domain containing protein.;Transcript_evidence=AK099838 (DDBJ%2C Best hit);ORF_evidence=longestORF;InterPro=Transposase%2C Ptta/En/Spm%2C plant (IPR004252);NIAS_FLcDNA=J013107C14;TENOR=Os01t0650700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	26280197	26280346	.	-	.	Parent=Os01t0650700-01
Chr01	irgsp1_rep	CDS	26279885	26280100	.	-	0	Parent=Os01t0650700-01
Chr01	irgsp1_rep	CDS	26279661	26279753	.	-	0	Parent=Os01t0650700-01
Chr01	irgsp1_rep	CDS	26279502	26279582	.	-	0	Parent=Os01t0650700-01
Chr01	irgsp1_rep	CDS	26279176	26279415	.	-	0	Parent=Os01t0650700-01
Chr01	irgsp1_rep	three_prime_UTR	26279031	26279175	.	-	.	Parent=Os01t0650700-01
Chr01	irgsp1_rep	three_prime_UTR	26278875	26278935	.	-	.	Parent=Os01t0650700-01
Chr01	irgsp1_rep	three_prime_UTR	26278076	26278465	.	-	.	Parent=Os01t0650700-01
Chr01	irgsp1_rep	mRNA	26282810	26285087	.	-	.	ID=Os01t0650800-01;Name=Os01t0650800-01;Locus_id=Os01g0650800;Note=Transposon%2C En/Spm-like domain containing protein.;Transcript_evidence=AK070673 (DDBJ%2C Best hit);ORF_evidence=Q75M56 (UniProt);InterPro=Transposon%2C En/Spm-like (IPR004242);NIAS_FLcDNA=J023059G01;TENOR=Os01t0650800-01
Chr01	irgsp1_rep	five_prime_UTR	26285037	26285087	.	-	.	Parent=Os01t0650800-01
Chr01	irgsp1_rep	five_prime_UTR	26284775	26284945	.	-	.	Parent=Os01t0650800-01
Chr01	irgsp1_rep	five_prime_UTR	26283811	26284370	.	-	.	Parent=Os01t0650800-01
Chr01	irgsp1_rep	CDS	26282810	26283810	.	-	0	Parent=Os01t0650800-01
Chr01	irgsp1_rep	mRNA	26286441	26287942	.	+	.	ID=Os01t0650900-00;Name=Os01t0650900-00;Locus_id=Os01g0650900;CGSNL Gene Symbol=GELP22;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 22;Oryzabase Gene Symbol Synonym(s)=OsGELP22;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 22;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK375707 (DDBJ);ORF_evidence=NP_001043727.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);Oryzabase=10972;TENOR=Os01t0650900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	26286441	26286738	.	+	0	Parent=Os01t0650900-00
Chr01	irgsp1_rep	CDS	26286842	26287057	.	+	2	Parent=Os01t0650900-00
Chr01	irgsp1_rep	CDS	26287180	26287632	.	+	2	Parent=Os01t0650900-00
Chr01	irgsp1_rep	CDS	26287731	26287942	.	+	2	Parent=Os01t0650900-00
Chr01	irgsp1_rep	mRNA	26286573	26287867	.	-	.	ID=Os01t0650950-00;Name=Os01t0650950-00;Locus_id=Os01g0650950;Note=Hypothetical protein.;Transcript_evidence=tplb0048c08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0650950-00
Chr01	irgsp1_rep	five_prime_UTR	26287835	26287867	.	-	.	Parent=Os01t0650950-00
Chr01	irgsp1_rep	CDS	26287719	26287834	.	-	0	Parent=Os01t0650950-00
Chr01	irgsp1_rep	CDS	26287476	26287623	.	-	1	Parent=Os01t0650950-00
Chr01	irgsp1_rep	three_prime_UTR	26286966	26287475	.	-	.	Parent=Os01t0650950-00
Chr01	irgsp1_rep	three_prime_UTR	26286573	26286733	.	-	.	Parent=Os01t0650950-00
Chr01	irgsp1_rep	mRNA	26290150	26292389	.	+	.	ID=Os01t0651000-01;Name=Os01t0651000-01;Locus_id=Os01g0651000;CGSNL Gene Symbol=GELP23;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 23;Oryzabase Gene Symbol Synonym(s)=OsGELP23;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 23;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK242032 (DDBJ%2C Best hit);ORF_evidence=Q8RZ48 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=J075116N16;Oryzabase=10973;TENOR=Os01t0651000-01;KEGG=Os01t0651000-01
Chr01	irgsp1_rep	five_prime_UTR	26290150	26290233	.	+	.	Parent=Os01t0651000-01
Chr01	irgsp1_rep	CDS	26290234	26290498	.	+	0	Parent=Os01t0651000-01
Chr01	irgsp1_rep	CDS	26290997	26291209	.	+	2	Parent=Os01t0651000-01
Chr01	irgsp1_rep	CDS	26291362	26291513	.	+	2	Parent=Os01t0651000-01
Chr01	irgsp1_rep	CDS	26291626	26291899	.	+	0	Parent=Os01t0651000-01
Chr01	irgsp1_rep	CDS	26292019	26292227	.	+	2	Parent=Os01t0651000-01
Chr01	irgsp1_rep	three_prime_UTR	26292228	26292389	.	+	.	Parent=Os01t0651000-01
Chr01	irgsp1_rep	mRNA	26293489	26298880	.	+	.	ID=Os01t0651100-01;Name=Os01t0651100-01;Locus_id=Os01g0651100;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK119380 (DDBJ%2C Best hit);ORF_evidence=B8A6T7 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=001-132-B03;TENOR=Os01t0651100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	26293489	26293540	.	+	.	Parent=Os01t0651100-01
Chr01	irgsp1_rep	CDS	26293541	26295001	.	+	0	Parent=Os01t0651100-01
Chr01	irgsp1_rep	three_prime_UTR	26295002	26295386	.	+	.	Parent=Os01t0651100-01
Chr01	irgsp1_rep	three_prime_UTR	26295849	26297041	.	+	.	Parent=Os01t0651100-01
Chr01	irgsp1_rep	three_prime_UTR	26298405	26298880	.	+	.	Parent=Os01t0651100-01
Chr01	irgsp1_rep	mRNA	26300193	26302513	.	-	.	ID=Os01t0651150-00;Name=Os01t0651150-00;Locus_id=Os01g0651150;Note=Hypothetical protein.;Transcript_evidence=BT042980 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0651150-00
Chr01	irgsp1_rep	five_prime_UTR	26302398	26302513	.	-	.	Parent=Os01t0651150-00
Chr01	irgsp1_rep	CDS	26302315	26302397	.	-	0	Parent=Os01t0651150-00
Chr01	irgsp1_rep	CDS	26300193	26300791	.	-	1	Parent=Os01t0651150-00
Chr01	irgsp1_rep	mRNA	26300660	26302232	.	+	.	ID=Os01t0651200-01;Name=Os01t0651200-01;Locus_id=Os01g0651200;Oryzabase Gene Symbol Synonym(s)=OsSTA25;Note=Hypothetical conserved gene.;Transcript_evidence=AK288854 (DDBJ%2C Best hit);ORF_evidence=A2WT96 (UniProt);NIAS_FLcDNA=J090075O17;Oryzabase=19334;TENOR=Os01t0651200-01;KEGG=Os01t0651200-01
Chr01	irgsp1_rep	five_prime_UTR	26300660	26300661	.	+	.	Parent=Os01t0651200-01
Chr01	irgsp1_rep	CDS	26300662	26300883	.	+	0	Parent=Os01t0651200-01
Chr01	irgsp1_rep	three_prime_UTR	26300884	26302232	.	+	.	Parent=Os01t0651200-01
Chr01	irgsp1_rep	mRNA	26306238	26307237	.	+	.	ID=Os01t0651300-01;Name=Os01t0651300-01;Locus_id=Os01g0651300;Note=Similar to GDSL-motif lipase/hydrolase-like protein.;Transcript_evidence=AK111325 (DDBJ%2C Best hit);ORF_evidence=NP_001151904.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=002-181-D09;Expression=AK111325;TENOR=Os01t0651300-01;KEGG=Os01t0651300-01
Chr01	irgsp1_rep	five_prime_UTR	26306238	26306433	.	+	.	Parent=Os01t0651300-01
Chr01	irgsp1_rep	CDS	26306434	26306970	.	+	0	Parent=Os01t0651300-01
Chr01	irgsp1_rep	three_prime_UTR	26306971	26307237	.	+	.	Parent=Os01t0651300-01
Chr01	irgsp1_rep	mRNA	26306408	26309172	.	-	.	ID=Os01t0651350-00;Name=Os01t0651350-00;Locus_id=Os01g0651350;Note=Hypothetical protein.;Transcript_evidence=EU950608 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0651350-00
Chr01	irgsp1_rep	five_prime_UTR	26308693	26309172	.	-	.	Parent=Os01t0651350-00
Chr01	irgsp1_rep	CDS	26308567	26308692	.	-	0	Parent=Os01t0651350-00
Chr01	irgsp1_rep	CDS	26306408	26306694	.	-	0	Parent=Os01t0651350-00
Chr01	irgsp1_rep	mRNA	26309253	26311638	.	+	.	ID=Os01t0651400-01;Name=Os01t0651400-01;Locus_id=Os01g0651400;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK059784 (DDBJ%2C Best hit);ORF_evidence=NP_001151904.1 (RefSeq);NIAS_FLcDNA=006-204-D06;Expression=AK059784;TENOR=Os01t0651400-01;KEGG=Os01t0651400-01
Chr01	irgsp1_rep	five_prime_UTR	26309253	26309609	.	+	.	Parent=Os01t0651400-01
Chr01	irgsp1_rep	five_prime_UTR	26311048	26311204	.	+	.	Parent=Os01t0651400-01
Chr01	irgsp1_rep	CDS	26311205	26311450	.	+	0	Parent=Os01t0651400-01
Chr01	irgsp1_rep	three_prime_UTR	26311451	26311638	.	+	.	Parent=Os01t0651400-01
Chr01	irgsp1_rep	mRNA	26312068	26313056	.	-	.	ID=Os01t0651450-00;Name=Os01t0651450-00;Locus_id=Os01g0651450;Note=Hypothetical protein.;Transcript_evidence=EU954131 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0651450-00
Chr01	irgsp1_rep	five_prime_UTR	26312787	26313056	.	-	.	Parent=Os01t0651450-00
Chr01	irgsp1_rep	CDS	26312208	26312786	.	-	0	Parent=Os01t0651450-00
Chr01	irgsp1_rep	three_prime_UTR	26312068	26312207	.	-	.	Parent=Os01t0651450-00
Chr01	irgsp1_rep	mRNA	26312015	26313114	.	+	.	ID=Os01t0651500-00;Name=Os01t0651500-00;Locus_id=Os01g0651500;Note=Wax synthase domain containing protein.;Transcript_evidence=EU959294 (DDBJ);ORF_evidence=B6T2S9 (UniProt);InterPro=Wax synthase (IPR017088);TENOR=Os01t0651500-00;KEGG=Os01t0651500-00
Chr01	irgsp1_rep	five_prime_UTR	26312015	26312043	.	+	.	Parent=Os01t0651500-00
Chr01	irgsp1_rep	CDS	26312044	26313114	.	+	0	Parent=Os01t0651500-00
Chr01	irgsp1_rep	mRNA	26321416	26324769	.	+	.	ID=Os01t0651800-01;Name=Os01t0651800-01;Locus_id=Os01g0651800;Note=Lipase%2C class 3 family protein.;Transcript_evidence=AK102737 (DDBJ%2C Best hit);ORF_evidence=A2WTA0 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921);NIAS_FLcDNA=J033106C14;Expression=AK102737;TENOR=Os01t0651800-01;KEGG=Os01t0651800-01
Chr01	irgsp1_rep	five_prime_UTR	26321416	26321546	.	+	.	Parent=Os01t0651800-01
Chr01	irgsp1_rep	CDS	26321547	26322191	.	+	0	Parent=Os01t0651800-01
Chr01	irgsp1_rep	CDS	26323970	26324587	.	+	0	Parent=Os01t0651800-01
Chr01	irgsp1_rep	three_prime_UTR	26324588	26324769	.	+	.	Parent=Os01t0651800-01
Chr01	irgsp1_rep	mRNA	26321617	26324525	.	-	.	ID=Os01t0651866-00;Name=Os01t0651866-00;Locus_id=Os01g0651866;Note=Hypothetical gene.;Transcript_evidence=EU969884 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0651866-00;KEGG=Os01t0651866-00
Chr01	irgsp1_rep	five_prime_UTR	26324525	26324525	.	-	.	Parent=Os01t0651866-00
Chr01	irgsp1_rep	CDS	26323987	26324524	.	-	0	Parent=Os01t0651866-00
Chr01	irgsp1_rep	CDS	26322137	26322207	.	-	2	Parent=Os01t0651866-00
Chr01	irgsp1_rep	three_prime_UTR	26321617	26322136	.	-	.	Parent=Os01t0651866-00
Chr01	irgsp1_rep	mRNA	26364766	26367362	.	+	.	ID=Os01t0651932-00;Name=Os01t0651932-00;Locus_id=Os01g0651932;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9EYD1 (UniProt);TENOR=Os01t0651932-00;KEGG=Os01t0651932-00
Chr01	irgsp1_rep	CDS	26364766	26365899	.	+	0	Parent=Os01t0651932-00
Chr01	irgsp1_rep	CDS	26366710	26366841	.	+	0	Parent=Os01t0651932-00
Chr01	irgsp1_rep	CDS	26366936	26367117	.	+	0	Parent=Os01t0651932-00
Chr01	irgsp1_rep	CDS	26367230	26367362	.	+	1	Parent=Os01t0651932-00
Chr01	irgsp1_rep	mRNA	26367912	26369437	.	+	.	ID=Os01t0652000-01;Name=Os01t0652000-01;Locus_id=Os01g0652000;Note=Similar to proline-rich family protein.;Transcript_evidence=AK058938 (DDBJ%2C Best hit);ORF_evidence=NP_193591.2 (RefSeq);NIAS_FLcDNA=001-009-F08;Expression=AK058938;TENOR=Os01t0652000-01;KEGG=Os01t0652000-01
Chr01	irgsp1_rep	five_prime_UTR	26367912	26368718	.	+	.	Parent=Os01t0652000-01
Chr01	irgsp1_rep	CDS	26368719	26368877	.	+	0	Parent=Os01t0652000-01
Chr01	irgsp1_rep	CDS	26369003	26369137	.	+	0	Parent=Os01t0652000-01
Chr01	irgsp1_rep	three_prime_UTR	26369138	26369437	.	+	.	Parent=Os01t0652000-01
Chr01	irgsp1_rep	mRNA	26368398	26374101	.	-	.	ID=Os01t0652100-01;Name=Os01t0652100-01;Locus_id=Os01g0652100;Oryzabase Gene Symbol Synonym(s)=OsTBL21%2C TBL21;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 21;Note=Protein of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=AK073036 (DDBJ%2C Best hit),AK069291 (DDBJ%2C Best hit);ORF_evidence=A8Y5V3 (UniProt);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=J023147O12,J023013B17;Oryzabase=21476;Expression=AK073036;TENOR=Os01t0652100-01;KEGG=Os01t0652100-01
Chr01	irgsp1_rep	five_prime_UTR	26374037	26374101	.	-	.	Parent=Os01t0652100-01
Chr01	irgsp1_rep	CDS	26373654	26374036	.	-	0	Parent=Os01t0652100-01
Chr01	irgsp1_rep	CDS	26373381	26373552	.	-	1	Parent=Os01t0652100-01
Chr01	irgsp1_rep	CDS	26370450	26370622	.	-	0	Parent=Os01t0652100-01
Chr01	irgsp1_rep	CDS	26370209	26370367	.	-	1	Parent=Os01t0652100-01
Chr01	irgsp1_rep	CDS	26369812	26370103	.	-	1	Parent=Os01t0652100-01
Chr01	irgsp1_rep	three_prime_UTR	26368398	26369811	.	-	.	Parent=Os01t0652100-01
Chr01	irgsp1_rep	mRNA	26370320	26374047	.	+	.	ID=Os01t0652200-00;Name=Os01t0652200-00;Locus_id=Os01g0652200;Note=Hypothetical protein.;Transcript_evidence=BT084838 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0652200-00
Chr01	irgsp1_rep	five_prime_UTR	26370320	26370701	.	+	.	Parent=Os01t0652200-00
Chr01	irgsp1_rep	five_prime_UTR	26373367	26373646	.	+	.	Parent=Os01t0652200-00
Chr01	irgsp1_rep	CDS	26373647	26374015	.	+	0	Parent=Os01t0652200-00
Chr01	irgsp1_rep	three_prime_UTR	26374016	26374047	.	+	.	Parent=Os01t0652200-00
Chr01	irgsp1_rep	mRNA	26383595	26387037	.	-	.	ID=Os01t0652300-01;Name=Os01t0652300-01;Locus_id=Os01g0652300;Note=Similar to Phospholipase A1-II 7.;Transcript_evidence=AK063136 (DDBJ%2C Best hit);ORF_evidence=A2Y7R2 (UniProt);NIAS_FLcDNA=001-111-G02;TENOR=Os01t0652300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	26386911	26387037	.	-	.	Parent=Os01t0652300-01
Chr01	irgsp1_rep	CDS	26386684	26386910	.	-	0	Parent=Os01t0652300-01
Chr01	irgsp1_rep	CDS	26383896	26383947	.	-	1	Parent=Os01t0652300-01
Chr01	irgsp1_rep	three_prime_UTR	26383595	26383895	.	-	.	Parent=Os01t0652300-01
Chr01	irgsp1_rep	mRNA	26383821	26387010	.	+	.	ID=Os01t0652375-00;Name=Os01t0652375-00;Locus_id=Os01g0652375;Note=Hypothetical protein.;Transcript_evidence=EU969884 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0652375-00
Chr01	irgsp1_rep	five_prime_UTR	26383821	26384319	.	+	.	Parent=Os01t0652375-00
Chr01	irgsp1_rep	five_prime_UTR	26386293	26386377	.	+	.	Parent=Os01t0652375-00
Chr01	irgsp1_rep	CDS	26386378	26386641	.	+	0	Parent=Os01t0652375-00
Chr01	irgsp1_rep	three_prime_UTR	26386642	26387010	.	+	.	Parent=Os01t0652375-00
Chr01	irgsp1_rep	mRNA	26384648	26385354	.	-	.	ID=Os01t0652450-00;Name=Os01t0652450-00;Locus_id=Os01g0652450;Note=Hypothetical gene.;Transcript_evidence=CT834813 (DDBJ%2C Best hit);ORF_evidence=Q6L4J0 (UniProt);TENOR=Os01t0652450-00;KEGG=Os01t0652450-00
Chr01	irgsp1_rep	five_prime_UTR	26385132	26385354	.	-	.	Parent=Os01t0652450-00
Chr01	irgsp1_rep	CDS	26384862	26385131	.	-	0	Parent=Os01t0652450-00
Chr01	irgsp1_rep	three_prime_UTR	26384648	26384861	.	-	.	Parent=Os01t0652450-00
Chr01	irgsp1_rep	mRNA	26392164	26396100	.	+	.	ID=Os01t0652600-01;Name=Os01t0652600-01;Locus_id=Os01g0652600;Note=Similar to Ketol-acid reductoisomerase%2C chloroplast precursor (EC 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase).;Transcript_evidence=AK072075 (DDBJ%2C Best hit);ORF_evidence=B6TF69 (UniProt);GO=Biological Process: cellular amino acid biosynthetic process (GO:0008652),Biological Process: branched chain family amino acid biosynthetic process (GO:0009082),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ketol-acid reductoisomerase activity (GO:0004455),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: coenzyme binding (GO:0050662);InterPro=Acetohydroxy acid isomeroreductase C-terminal (IPR000506),6-phosphogluconate dehydrogenase%2C C-terminal-like (IPR008927),Acetohydroxy acid isomeroreductase (IPR013023),Acetohydroxy acid isomeroreductase%2C catalytic (IPR013116),Dehydrogenase%2C multihelical (IPR013328),NAD(P)-binding domain (IPR016040),Ketol-acid reductoisomerase (IPR016206);NIAS_FLcDNA=J013115K02;Expression=AK072075;TENOR=Os01t0652600-01;KEGG=Os01t0652600-01 (EC:1.1.1.86)
Chr01	irgsp1_rep	five_prime_UTR	26392164	26392212	.	+	.	Parent=Os01t0652600-01
Chr01	irgsp1_rep	CDS	26392213	26392275	.	+	0	Parent=Os01t0652600-01
Chr01	irgsp1_rep	CDS	26392375	26392482	.	+	0	Parent=Os01t0652600-01
Chr01	irgsp1_rep	CDS	26392584	26392676	.	+	0	Parent=Os01t0652600-01
Chr01	irgsp1_rep	CDS	26393268	26393333	.	+	0	Parent=Os01t0652600-01
Chr01	irgsp1_rep	CDS	26393614	26393754	.	+	0	Parent=Os01t0652600-01
Chr01	irgsp1_rep	CDS	26394207	26394434	.	+	0	Parent=Os01t0652600-01
Chr01	irgsp1_rep	CDS	26394550	26394667	.	+	0	Parent=Os01t0652600-01
Chr01	irgsp1_rep	CDS	26394735	26394874	.	+	2	Parent=Os01t0652600-01
Chr01	irgsp1_rep	CDS	26395001	26395168	.	+	0	Parent=Os01t0652600-01
Chr01	irgsp1_rep	CDS	26395262	26395417	.	+	0	Parent=Os01t0652600-01
Chr01	irgsp1_rep	CDS	26395515	26395880	.	+	0	Parent=Os01t0652600-01
Chr01	irgsp1_rep	three_prime_UTR	26395881	26396100	.	+	.	Parent=Os01t0652600-01
Chr01	irgsp1_rep	mRNA	26394775	26395343	.	-	.	ID=Os01t0652650-00;Name=Os01t0652650-00;Locus_id=Os01g0652650;Note=Non-protein coding transcript.;Transcript_evidence=D21110 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os01t0652650-00
Chr01	irgsp1_rep	exon	26395262	26395343	.	-	.	Parent=Os01t0652650-00
Chr01	irgsp1_rep	exon	26395001	26395168	.	-	.	Parent=Os01t0652650-00
Chr01	irgsp1_rep	exon	26394775	26394874	.	-	.	Parent=Os01t0652650-00
Chr01	irgsp1_rep	mRNA	26398214	26398679	.	+	.	ID=Os01t0652700-00;Name=Os01t0652700-00;Locus_id=Os01g0652700;Note=Similar to predicted protein.;Transcript_evidence=EU967350 (DDBJ);ORF_evidence=NP_001043739.2 (RefSeq);InterPro=Protein of unknown function DUF538 (IPR007493);TENOR=Os01t0652700-00;KEGG=Os01t0652700-00
Chr01	irgsp1_rep	five_prime_UTR	26398214	26398263	.	+	.	Parent=Os01t0652700-00
Chr01	irgsp1_rep	CDS	26398264	26398674	.	+	0	Parent=Os01t0652700-00
Chr01	irgsp1_rep	three_prime_UTR	26398675	26398679	.	+	.	Parent=Os01t0652700-00
Chr01	irgsp1_rep	mRNA	26401569	26403477	.	-	.	ID=Os01t0652800-01;Name=Os01t0652800-01;Locus_id=Os01g0652800;Oryzabase Gene Symbol Synonym(s)=OsTBL57%2C TBL57;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 57;Note=Protein of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=AK061145 (DDBJ%2C Best hit),AK103547 (DDBJ%2C Best hit),AK104312 (DDBJ%2C Best hit);ORF_evidence=A2WTA8 (UniProt);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=006-208-D04,J033132E17,001-018-G10;Oryzabase=21511;Expression=AK061145;TENOR=Os01t0652800-01;KEGG=Os01t0652800-01
Chr01	irgsp1_rep	five_prime_UTR	26403229	26403477	.	-	.	Parent=Os01t0652800-01
Chr01	irgsp1_rep	CDS	26402782	26403228	.	-	0	Parent=Os01t0652800-01
Chr01	irgsp1_rep	CDS	26401846	26402613	.	-	0	Parent=Os01t0652800-01
Chr01	irgsp1_rep	three_prime_UTR	26401569	26401845	.	-	.	Parent=Os01t0652800-01
Chr01	irgsp1_rep	mRNA	26401702	26402017	.	-	.	ID=Os01t0652800-04;Name=Os01t0652800-04;Locus_id=Os01g0652800;Oryzabase Gene Symbol Synonym(s)=OsTBL57%2C TBL57;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 57;Note=Domain of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=AK058693 (DDBJ%2C Best hit);ORF_evidence=Q5VPB1 (UniProt);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=001-019-B06;Oryzabase=21511;Expression=AK058693;TENOR=Os01t0652800-04;KEGG=Os01t0652800-04
Chr01	irgsp1_rep	five_prime_UTR	26402017	26402017	.	-	.	Parent=Os01t0652800-04
Chr01	irgsp1_rep	CDS	26401846	26402016	.	-	0	Parent=Os01t0652800-04
Chr01	irgsp1_rep	three_prime_UTR	26401702	26401845	.	-	.	Parent=Os01t0652800-04
Chr01	irgsp1_rep	mRNA	26414917	26418855	.	-	.	ID=Os01t0653100-00;Name=Os01t0653100-00;Locus_id=Os01g0653100;Oryzabase Gene Symbol Synonym(s)=OsTBL58%2C TBL58;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 58;Note=Conserved hypothetical protein.;Transcript_evidence=BT033684 (DDBJ);ORF_evidence=NP_001043741.1 (RefSeq);Oryzabase=21512;TENOR=Os01t0653100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	26418472	26418855	.	-	0	Parent=Os01t0653100-00
Chr01	irgsp1_rep	CDS	26415761	26416026	.	-	0	Parent=Os01t0653100-00
Chr01	irgsp1_rep	CDS	26414974	26415679	.	-	1	Parent=Os01t0653100-00
Chr01	irgsp1_rep	three_prime_UTR	26414917	26414973	.	-	.	Parent=Os01t0653100-00
Chr01	irgsp1_rep	mRNA	26420263	26421981	.	+	.	ID=Os01t0653200-01;Name=Os01t0653200-01;Locus_id=Os01g0653200;Note=Glycosyl transferase%2C group 1 domain containing protein.;Transcript_evidence=AK110920 (DDBJ%2C Best hit);ORF_evidence=NP_567589.1 (RefSeq);GO=Biological Process: biosynthetic process (GO:0009058);InterPro=Glycosyl transferase%2C family 1 (IPR001296);NIAS_FLcDNA=002-173-D01;Expression=AK110920;TENOR=Os01t0653200-01;KEGG=Os01t0653200-01
Chr01	irgsp1_rep	five_prime_UTR	26420263	26420331	.	+	.	Parent=Os01t0653200-01
Chr01	irgsp1_rep	CDS	26420332	26421843	.	+	0	Parent=Os01t0653200-01
Chr01	irgsp1_rep	three_prime_UTR	26421844	26421981	.	+	.	Parent=Os01t0653200-01
Chr01	irgsp1_rep	mRNA	26423510	26423740	.	-	.	ID=Os01t0653300-00;Name=Os01t0653300-00;Locus_id=Os01g0653300;Oryzabase Gene Symbol Synonym(s)=OsVQ2;Oryzabase Gene Name Synonym(s)=VQ motif-containing protein 2;Note=VQ domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5VPB5 (UniProt);InterPro=VQ (IPR008889);Oryzabase=13618;TENOR=Os01t0653300-00
Chr01	irgsp1_rep	CDS	26423510	26423740	.	-	0	Parent=Os01t0653300-00
Chr01	irgsp1_rep	mRNA	26428183	26429329	.	-	.	ID=Os01t0653350-00;Name=Os01t0653350-00;Locus_id=Os01g0653350;Note=Similar to WD-40 repeat family protein (Fragment).;Transcript_evidence=ab initio prediction;ORF_evidence=Q45R32 (UniProt);TENOR=Os01t0653350-00
Chr01	irgsp1_rep	CDS	26428881	26429329	.	-	0	Parent=Os01t0653350-00
Chr01	irgsp1_rep	CDS	26428183	26428423	.	-	1	Parent=Os01t0653350-00
Chr01	irgsp1_rep	mRNA	26431968	26434327	.	-	.	ID=Os01t0653500-00;Name=Os01t0653500-00;Locus_id=Os01g0653500;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5VPB2 (UniProt);TENOR=Os01t0653500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	26433625	26434327	.	-	0	Parent=Os01t0653500-00
Chr01	irgsp1_rep	CDS	26432971	26433023	.	-	2	Parent=Os01t0653500-00
Chr01	irgsp1_rep	CDS	26432809	26432860	.	-	0	Parent=Os01t0653500-00
Chr01	irgsp1_rep	CDS	26432520	26432636	.	-	2	Parent=Os01t0653500-00
Chr01	irgsp1_rep	CDS	26431968	26432287	.	-	2	Parent=Os01t0653500-00
Chr01	irgsp1_rep	mRNA	26449054	26449963	.	-	.	ID=Os01t0653601-01;Name=Os01t0653601-01;Locus_id=Os01g0653601;Note=Hypothetical gene.;Transcript_evidence=AK242520 (DDBJ%2C Best hit);ORF_evidence=A2YRA5 (UniProt);NIAS_FLcDNA=J080313L04;TENOR=Os01t0653601-01;KEGG=Os01t0653601-01
Chr01	irgsp1_rep	five_prime_UTR	26449763	26449963	.	-	.	Parent=Os01t0653601-01
Chr01	irgsp1_rep	CDS	26449759	26449762	.	-	0	Parent=Os01t0653601-01
Chr01	irgsp1_rep	CDS	26449415	26449629	.	-	2	Parent=Os01t0653601-01
Chr01	irgsp1_rep	three_prime_UTR	26449054	26449414	.	-	.	Parent=Os01t0653601-01
Chr01	irgsp1_rep	mRNA	26449179	26452724	.	+	.	ID=Os01t0653700-01;Name=Os01t0653700-01;Locus_id=Os01g0653700;Oryzabase Gene Symbol Synonym(s)=OsFbox032%2C OsFbox32%2C Os_F0271;Oryzabase Gene Name Synonym(s)=F-box protein 32;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK073990 (DDBJ%2C Best hit);ORF_evidence=B8A6U2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033072D10;Oryzabase=16833;Expression=AK073990;TENOR=Os01t0653700-01;KEGG=Os01t0653700-01
Chr01	irgsp1_rep	five_prime_UTR	26449179	26449821	.	+	.	Parent=Os01t0653700-01
Chr01	irgsp1_rep	CDS	26449822	26449914	.	+	0	Parent=Os01t0653700-01
Chr01	irgsp1_rep	CDS	26450805	26451881	.	+	0	Parent=Os01t0653700-01
Chr01	irgsp1_rep	CDS	26451968	26452111	.	+	0	Parent=Os01t0653700-01
Chr01	irgsp1_rep	CDS	26452211	26452546	.	+	0	Parent=Os01t0653700-01
Chr01	irgsp1_rep	three_prime_UTR	26452547	26452724	.	+	.	Parent=Os01t0653700-01
Chr01	irgsp1_rep	mRNA	26449755	26452660	.	+	.	ID=Os01t0653700-02;Name=Os01t0653700-02;Locus_id=Os01g0653700;Oryzabase Gene Symbol Synonym(s)=OsFbox032%2C OsFbox32%2C Os_F0271;Oryzabase Gene Name Synonym(s)=F-box protein 32;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK120129 (DDBJ%2C Best hit);ORF_evidence=B8A6U2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013026O18;Oryzabase=16833;Expression=AK120129;TENOR=Os01t0653700-02;KEGG=Os01t0653700-02
Chr01	irgsp1_rep	five_prime_UTR	26449755	26449821	.	+	.	Parent=Os01t0653700-02
Chr01	irgsp1_rep	CDS	26449822	26449914	.	+	0	Parent=Os01t0653700-02
Chr01	irgsp1_rep	CDS	26450805	26451881	.	+	0	Parent=Os01t0653700-02
Chr01	irgsp1_rep	CDS	26451968	26452111	.	+	0	Parent=Os01t0653700-02
Chr01	irgsp1_rep	CDS	26452211	26452546	.	+	0	Parent=Os01t0653700-02
Chr01	irgsp1_rep	three_prime_UTR	26452547	26452660	.	+	.	Parent=Os01t0653700-02
Chr01	irgsp1_rep	mRNA	26457976	26465951	.	-	.	ID=Os01t0653800-01;Name=Os01t0653800-01;Locus_id=Os01g0653800;Note=Similar to predicted protein.;Transcript_evidence=AK111531 (DDBJ%2C Best hit);ORF_evidence=Q2HV05 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J013022M05;TENOR=Os01t0653800-01
Chr01	irgsp1_rep	five_prime_UTR	26465798	26465951	.	-	.	Parent=Os01t0653800-01
Chr01	irgsp1_rep	CDS	26465666	26465797	.	-	0	Parent=Os01t0653800-01
Chr01	irgsp1_rep	CDS	26465427	26465511	.	-	0	Parent=Os01t0653800-01
Chr01	irgsp1_rep	CDS	26464466	26464505	.	-	2	Parent=Os01t0653800-01
Chr01	irgsp1_rep	CDS	26464130	26464378	.	-	1	Parent=Os01t0653800-01
Chr01	irgsp1_rep	CDS	26462947	26463046	.	-	1	Parent=Os01t0653800-01
Chr01	irgsp1_rep	CDS	26462799	26462873	.	-	0	Parent=Os01t0653800-01
Chr01	irgsp1_rep	CDS	26462524	26462622	.	-	0	Parent=Os01t0653800-01
Chr01	irgsp1_rep	CDS	26462289	26462405	.	-	0	Parent=Os01t0653800-01
Chr01	irgsp1_rep	CDS	26462091	26462206	.	-	0	Parent=Os01t0653800-01
Chr01	irgsp1_rep	CDS	26461883	26461982	.	-	1	Parent=Os01t0653800-01
Chr01	irgsp1_rep	CDS	26460841	26461199	.	-	0	Parent=Os01t0653800-01
Chr01	irgsp1_rep	CDS	26460287	26460617	.	-	1	Parent=Os01t0653800-01
Chr01	irgsp1_rep	CDS	26459206	26459402	.	-	0	Parent=Os01t0653800-01
Chr01	irgsp1_rep	CDS	26458567	26458785	.	-	1	Parent=Os01t0653800-01
Chr01	irgsp1_rep	CDS	26457976	26458016	.	-	1	Parent=Os01t0653800-01
Chr01	irgsp1_rep	mRNA	26453784	26465951	.	-	.	ID=Os01t0653800-02;Name=Os01t0653800-02;Locus_id=Os01g0653800;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK111686 (DDBJ%2C Best hit);ORF_evidence=Q2HV05 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J013170K17;Expression=AK111686;TENOR=Os01t0653800-02;KEGG=Os01t0653800-02
Chr01	irgsp1_rep	five_prime_UTR	26465798	26465951	.	-	.	Parent=Os01t0653800-02
Chr01	irgsp1_rep	CDS	26465666	26465797	.	-	0	Parent=Os01t0653800-02
Chr01	irgsp1_rep	CDS	26465427	26465511	.	-	0	Parent=Os01t0653800-02
Chr01	irgsp1_rep	CDS	26464466	26464505	.	-	2	Parent=Os01t0653800-02
Chr01	irgsp1_rep	CDS	26464130	26464378	.	-	1	Parent=Os01t0653800-02
Chr01	irgsp1_rep	CDS	26462947	26463046	.	-	1	Parent=Os01t0653800-02
Chr01	irgsp1_rep	CDS	26462799	26462873	.	-	0	Parent=Os01t0653800-02
Chr01	irgsp1_rep	CDS	26462524	26462622	.	-	0	Parent=Os01t0653800-02
Chr01	irgsp1_rep	CDS	26462289	26462405	.	-	0	Parent=Os01t0653800-02
Chr01	irgsp1_rep	CDS	26462091	26462206	.	-	0	Parent=Os01t0653800-02
Chr01	irgsp1_rep	CDS	26461883	26461982	.	-	1	Parent=Os01t0653800-02
Chr01	irgsp1_rep	CDS	26460841	26461199	.	-	0	Parent=Os01t0653800-02
Chr01	irgsp1_rep	CDS	26460287	26460617	.	-	1	Parent=Os01t0653800-02
Chr01	irgsp1_rep	CDS	26459206	26459402	.	-	0	Parent=Os01t0653800-02
Chr01	irgsp1_rep	CDS	26458567	26458785	.	-	1	Parent=Os01t0653800-02
Chr01	irgsp1_rep	CDS	26457830	26458016	.	-	1	Parent=Os01t0653800-02
Chr01	irgsp1_rep	CDS	26456676	26456923	.	-	0	Parent=Os01t0653800-02
Chr01	irgsp1_rep	CDS	26456438	26456530	.	-	1	Parent=Os01t0653800-02
Chr01	irgsp1_rep	CDS	26456247	26456348	.	-	1	Parent=Os01t0653800-02
Chr01	irgsp1_rep	CDS	26455732	26456101	.	-	1	Parent=Os01t0653800-02
Chr01	irgsp1_rep	CDS	26454990	26455127	.	-	0	Parent=Os01t0653800-02
Chr01	irgsp1_rep	CDS	26454028	26454804	.	-	0	Parent=Os01t0653800-02
Chr01	irgsp1_rep	three_prime_UTR	26453784	26454027	.	-	.	Parent=Os01t0653800-02
Chr01	irgsp1_rep	mRNA	26454207	26459369	.	-	.	ID=Os01t0653800-03;Name=Os01t0653800-03;Locus_id=Os01g0653800;Note=Similar to Peptidase S8 and S53%2C subtilisin%2C kexin%2C sedolisin%3B WD40-like.;Transcript_evidence=AK111843 (DDBJ%2C Best hit);ORF_evidence=Q2HV05 (UniProt);NIAS_FLcDNA=J023140F23;TENOR=Os01t0653800-03
Chr01	irgsp1_rep	CDS	26459206	26459369	.	-	0	Parent=Os01t0653800-03
Chr01	irgsp1_rep	CDS	26458567	26458785	.	-	1	Parent=Os01t0653800-03
Chr01	irgsp1_rep	CDS	26457830	26458016	.	-	1	Parent=Os01t0653800-03
Chr01	irgsp1_rep	CDS	26456676	26456923	.	-	0	Parent=Os01t0653800-03
Chr01	irgsp1_rep	CDS	26456438	26456530	.	-	1	Parent=Os01t0653800-03
Chr01	irgsp1_rep	CDS	26456247	26456348	.	-	1	Parent=Os01t0653800-03
Chr01	irgsp1_rep	CDS	26455732	26456101	.	-	1	Parent=Os01t0653800-03
Chr01	irgsp1_rep	CDS	26454990	26455127	.	-	0	Parent=Os01t0653800-03
Chr01	irgsp1_rep	CDS	26454207	26454804	.	-	0	Parent=Os01t0653800-03
Chr01	irgsp1_rep	mRNA	26514543	26521761	.	+	.	ID=Os01t0654100-01;Name=Os01t0654100-01;Locus_id=Os01g0654100;Note=Similar to CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP synthetase).;Transcript_evidence=AK069482 (DDBJ%2C Best hit);ORF_evidence=NP_001148101.1 (RefSeq);GO=Biological Process: pyrimidine nucleotide biosynthetic process (GO:0006221),Molecular Function: CTP synthase activity (GO:0003883);InterPro=CTP synthase (IPR004468),CTP synthase%2C N-terminal (IPR017456),Glutamine amidotransferase type 1 (IPR017926);NIAS_FLcDNA=J023020O19;Expression=AK069482;TENOR=Os01t0654100-01;KEGG=Os01t0654100-01 (EC:6.3.4.2)
Chr01	irgsp1_rep	five_prime_UTR	26514543	26514729	.	+	.	Parent=Os01t0654100-01
Chr01	irgsp1_rep	CDS	26514730	26514847	.	+	0	Parent=Os01t0654100-01
Chr01	irgsp1_rep	CDS	26516140	26516219	.	+	2	Parent=Os01t0654100-01
Chr01	irgsp1_rep	CDS	26516415	26516501	.	+	0	Parent=Os01t0654100-01
Chr01	irgsp1_rep	CDS	26517188	26517238	.	+	0	Parent=Os01t0654100-01
Chr01	irgsp1_rep	CDS	26517323	26517440	.	+	0	Parent=Os01t0654100-01
Chr01	irgsp1_rep	CDS	26517610	26517666	.	+	2	Parent=Os01t0654100-01
Chr01	irgsp1_rep	CDS	26517757	26517821	.	+	2	Parent=Os01t0654100-01
Chr01	irgsp1_rep	CDS	26518296	26518379	.	+	0	Parent=Os01t0654100-01
Chr01	irgsp1_rep	CDS	26518483	26518533	.	+	0	Parent=Os01t0654100-01
Chr01	irgsp1_rep	CDS	26518616	26518678	.	+	0	Parent=Os01t0654100-01
Chr01	irgsp1_rep	CDS	26518758	26518804	.	+	0	Parent=Os01t0654100-01
Chr01	irgsp1_rep	CDS	26518897	26518975	.	+	1	Parent=Os01t0654100-01
Chr01	irgsp1_rep	CDS	26519107	26519169	.	+	0	Parent=Os01t0654100-01
Chr01	irgsp1_rep	CDS	26519503	26519592	.	+	0	Parent=Os01t0654100-01
Chr01	irgsp1_rep	CDS	26519674	26519712	.	+	0	Parent=Os01t0654100-01
Chr01	irgsp1_rep	CDS	26519796	26520023	.	+	0	Parent=Os01t0654100-01
Chr01	irgsp1_rep	CDS	26520114	26520199	.	+	0	Parent=Os01t0654100-01
Chr01	irgsp1_rep	CDS	26520292	26520340	.	+	1	Parent=Os01t0654100-01
Chr01	irgsp1_rep	CDS	26520428	26520508	.	+	0	Parent=Os01t0654100-01
Chr01	irgsp1_rep	CDS	26520601	26520694	.	+	0	Parent=Os01t0654100-01
Chr01	irgsp1_rep	CDS	26521130	26521308	.	+	2	Parent=Os01t0654100-01
Chr01	irgsp1_rep	three_prime_UTR	26521309	26521761	.	+	.	Parent=Os01t0654100-01
Chr01	irgsp1_rep	mRNA	26514545	26515313	.	+	.	ID=Os01t0654100-02;Name=Os01t0654100-02;Locus_id=Os01g0654100;Note=CTP synthase domain containing protein.;Transcript_evidence=AK111300 (DDBJ%2C Best hit);ORF_evidence=Q6AUM6 (UniProt);GO=Biological Process: pyrimidine nucleotide biosynthetic process (GO:0006221),Molecular Function: CTP synthase activity (GO:0003883);InterPro=CTP synthase (IPR004468),CTP synthase%2C N-terminal (IPR017456);NIAS_FLcDNA=002-181-B02;TENOR=Os01t0654100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	26514545	26514720	.	+	.	Parent=Os01t0654100-02
Chr01	irgsp1_rep	CDS	26514721	26514852	.	+	0	Parent=Os01t0654100-02
Chr01	irgsp1_rep	three_prime_UTR	26514853	26515313	.	+	.	Parent=Os01t0654100-02
Chr01	irgsp1_rep	mRNA	26519114	26521694	.	+	.	ID=Os01t0654100-03;Name=Os01t0654100-03;Locus_id=Os01g0654100;Note=Similar to CTP synthase.;Transcript_evidence=AK062263 (DDBJ%2C Best hit);ORF_evidence=NP_001148101.1 (RefSeq);GO=Biological Process: pyrimidine nucleotide biosynthetic process (GO:0006221),Molecular Function: CTP synthase activity (GO:0003883);InterPro=CTP synthase (IPR004468),Glutamine amidotransferase type 1 (IPR017926);NIAS_FLcDNA=001-047-H06;Expression=AK062263;TENOR=Os01t0654100-03;KEGG=Os01t0654100-03 (EC:6.3.4.2)
Chr01	irgsp1_rep	five_prime_UTR	26519114	26519115	.	+	.	Parent=Os01t0654100-03
Chr01	irgsp1_rep	CDS	26519116	26519169	.	+	0	Parent=Os01t0654100-03
Chr01	irgsp1_rep	CDS	26519503	26519592	.	+	0	Parent=Os01t0654100-03
Chr01	irgsp1_rep	CDS	26519674	26519712	.	+	0	Parent=Os01t0654100-03
Chr01	irgsp1_rep	CDS	26519796	26520023	.	+	0	Parent=Os01t0654100-03
Chr01	irgsp1_rep	CDS	26520114	26520199	.	+	0	Parent=Os01t0654100-03
Chr01	irgsp1_rep	CDS	26520292	26520340	.	+	1	Parent=Os01t0654100-03
Chr01	irgsp1_rep	CDS	26520428	26520508	.	+	0	Parent=Os01t0654100-03
Chr01	irgsp1_rep	CDS	26520601	26520694	.	+	0	Parent=Os01t0654100-03
Chr01	irgsp1_rep	CDS	26521130	26521308	.	+	2	Parent=Os01t0654100-03
Chr01	irgsp1_rep	three_prime_UTR	26521309	26521694	.	+	.	Parent=Os01t0654100-03
Chr01	irgsp1_rep	mRNA	26514730	26520699	.	-	.	ID=Os01t0654150-00;Name=Os01t0654150-00;Locus_id=Os01g0654150;Note=Non-protein coding transcript.;Transcript_evidence=tplb0056h06 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os01t0654150-00
Chr01	irgsp1_rep	exon	26520599	26520699	.	-	.	Parent=Os01t0654150-00
Chr01	irgsp1_rep	exon	26520404	26520506	.	-	.	Parent=Os01t0654150-00
Chr01	irgsp1_rep	exon	26520112	26520226	.	-	.	Parent=Os01t0654150-00
Chr01	irgsp1_rep	exon	26519728	26520021	.	-	.	Parent=Os01t0654150-00
Chr01	irgsp1_rep	exon	26519492	26519578	.	-	.	Parent=Os01t0654150-00
Chr01	irgsp1_rep	exon	26519092	26519158	.	-	.	Parent=Os01t0654150-00
Chr01	irgsp1_rep	exon	26518761	26518853	.	-	.	Parent=Os01t0654150-00
Chr01	irgsp1_rep	exon	26517729	26518019	.	-	.	Parent=Os01t0654150-00
Chr01	irgsp1_rep	exon	26517296	26517465	.	-	.	Parent=Os01t0654150-00
Chr01	irgsp1_rep	exon	26516421	26516520	.	-	.	Parent=Os01t0654150-00
Chr01	irgsp1_rep	exon	26516110	26516223	.	-	.	Parent=Os01t0654150-00
Chr01	irgsp1_rep	exon	26514730	26514822	.	-	.	Parent=Os01t0654150-00
Chr01	irgsp1_rep	mRNA	26522784	26527301	.	-	.	ID=Os01t0654200-01;Name=Os01t0654200-01;Locus_id=Os01g0654200;Note=Peptidase M50 domain containing protein.;Transcript_evidence=AK100750 (DDBJ%2C Best hit);ORF_evidence=B9EYD8 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: metalloendopeptidase activity (GO:0004222);InterPro=Peptidase M50 (IPR008915);NIAS_FLcDNA=J023118K20;TENOR=Os01t0654200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	26527173	26527301	.	-	.	Parent=Os01t0654200-01
Chr01	irgsp1_rep	five_prime_UTR	26526415	26526480	.	-	.	Parent=Os01t0654200-01
Chr01	irgsp1_rep	five_prime_UTR	26525094	26525654	.	-	.	Parent=Os01t0654200-01
Chr01	irgsp1_rep	five_prime_UTR	26524801	26524972	.	-	.	Parent=Os01t0654200-01
Chr01	irgsp1_rep	CDS	26524723	26524800	.	-	0	Parent=Os01t0654200-01
Chr01	irgsp1_rep	CDS	26524216	26524647	.	-	0	Parent=Os01t0654200-01
Chr01	irgsp1_rep	CDS	26523762	26524091	.	-	0	Parent=Os01t0654200-01
Chr01	irgsp1_rep	CDS	26523128	26523304	.	-	0	Parent=Os01t0654200-01
Chr01	irgsp1_rep	three_prime_UTR	26522784	26523127	.	-	.	Parent=Os01t0654200-01
Chr01	irgsp1_rep	mRNA	26530279	26532048	.	+	.	ID=Os01t0654300-01;Name=Os01t0654300-01;Locus_id=Os01g0654300;Note=Similar to ARP2/3 complex 34 kDa subunit.;Transcript_evidence=AK058593 (DDBJ%2C Best hit);ORF_evidence=B6TA29 (UniProt);GO=Biological Process: regulation of actin filament polymerization (GO:0030833),Cellular Component: cytoskeleton (GO:0005856);InterPro=Arp2/3 complex%2C 34kDa subunit p34-Arc (IPR007188);NIAS_FLcDNA=001-017-G12;TENOR=Os01t0654300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	26530279	26530320	.	+	0	Parent=Os01t0654300-01
Chr01	irgsp1_rep	CDS	26530930	26530986	.	+	0	Parent=Os01t0654300-01
Chr01	irgsp1_rep	CDS	26531468	26531539	.	+	0	Parent=Os01t0654300-01
Chr01	irgsp1_rep	CDS	26531610	26531633	.	+	0	Parent=Os01t0654300-01
Chr01	irgsp1_rep	three_prime_UTR	26531634	26532048	.	+	.	Parent=Os01t0654300-01
Chr01	irgsp1_rep	mRNA	26532021	26532497	.	-	.	ID=Os01t0654400-01;Name=Os01t0654400-01;Locus_id=Os01g0654400;Note=Similar to Salt tolerant correlative protein.;Transcript_evidence=AK288103 (DDBJ%2C Best hit);ORF_evidence=E6Y2L2 (UniProt);NIAS_FLcDNA=J075195E21;TENOR=Os01t0654400-01;KEGG=Os01t0654400-01
Chr01	irgsp1_rep	five_prime_UTR	26532426	26532497	.	-	.	Parent=Os01t0654400-01
Chr01	irgsp1_rep	CDS	26532174	26532425	.	-	0	Parent=Os01t0654400-01
Chr01	irgsp1_rep	three_prime_UTR	26532021	26532173	.	-	.	Parent=Os01t0654400-01
Chr01	irgsp1_rep	mRNA	26532180	26532659	.	+	.	ID=Os01t0654450-00;Name=Os01t0654450-00;Locus_id=Os01g0654450;Note=Hypothetical gene.;Transcript_evidence=EU946002 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0654450-00;KEGG=Os01t0654450-00
Chr01	irgsp1_rep	CDS	26532180	26532482	.	+	0	Parent=Os01t0654450-00
Chr01	irgsp1_rep	three_prime_UTR	26532483	26532659	.	+	.	Parent=Os01t0654450-00
Chr01	irgsp1_rep	mRNA	26533072	26537108	.	-	.	ID=Os01t0654500-01;Name=Os01t0654500-01;Locus_id=Os01g0654500;Oryzabase Gene Name Synonym(s)=isocitrate dehydrogenase%2C isocitrate dehydrogenase (NADP+);Note=Similar to NADP-isocitrate dehydrogenase.;Transcript_evidence=AK061752 (DDBJ%2C Best hit);ORF_evidence=Q9XGU8 (UniProt);GO=Biological Process: isocitrate metabolic process (GO:0006102),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: isocitrate dehydrogenase (NADP+) activity (GO:0004450),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: NAD binding (GO:0051287);InterPro=Isocitrate dehydrogenase NADP-dependent%2C eukaryotic-type (IPR004790),Isocitrate/isopropylmalate dehydrogenase%2C conserved site (IPR019818),Isopropylmalate dehydrogenase-like domain (IPR024084);NIAS_FLcDNA=001-038-H06;Oryzabase=14455;Expression=AK061752;TENOR=Os01t0654500-01;KEGG=Os01t0654500-01 (EC:1.1.1.42)
Chr01	irgsp1_rep	five_prime_UTR	26537023	26537108	.	-	.	Parent=Os01t0654500-01
Chr01	irgsp1_rep	CDS	26536974	26537022	.	-	0	Parent=Os01t0654500-01
Chr01	irgsp1_rep	CDS	26536205	26536248	.	-	2	Parent=Os01t0654500-01
Chr01	irgsp1_rep	CDS	26535977	26536086	.	-	0	Parent=Os01t0654500-01
Chr01	irgsp1_rep	CDS	26535678	26535715	.	-	1	Parent=Os01t0654500-01
Chr01	irgsp1_rep	CDS	26535505	26535582	.	-	2	Parent=Os01t0654500-01
Chr01	irgsp1_rep	CDS	26535351	26535404	.	-	2	Parent=Os01t0654500-01
Chr01	irgsp1_rep	CDS	26535171	26535272	.	-	2	Parent=Os01t0654500-01
Chr01	irgsp1_rep	CDS	26534995	26535080	.	-	2	Parent=Os01t0654500-01
Chr01	irgsp1_rep	CDS	26534812	26534915	.	-	0	Parent=Os01t0654500-01
Chr01	irgsp1_rep	CDS	26534610	26534678	.	-	1	Parent=Os01t0654500-01
Chr01	irgsp1_rep	CDS	26534418	26534533	.	-	1	Parent=Os01t0654500-01
Chr01	irgsp1_rep	CDS	26534263	26534297	.	-	2	Parent=Os01t0654500-01
Chr01	irgsp1_rep	CDS	26533970	26534112	.	-	0	Parent=Os01t0654500-01
Chr01	irgsp1_rep	CDS	26533636	26533761	.	-	1	Parent=Os01t0654500-01
Chr01	irgsp1_rep	CDS	26533433	26533517	.	-	1	Parent=Os01t0654500-01
Chr01	irgsp1_rep	three_prime_UTR	26533072	26533432	.	-	.	Parent=Os01t0654500-01
Chr01	irgsp1_rep	mRNA	26533645	26537119	.	+	.	ID=Os01t0654650-00;Name=Os01t0654650-00;Locus_id=Os01g0654650;Note=Non-protein coding transcript.;Transcript_evidence=BT016882 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0654650-00
Chr01	irgsp1_rep	exon	26533645	26533745	.	+	.	Parent=Os01t0654650-00
Chr01	irgsp1_rep	exon	26533954	26534131	.	+	.	Parent=Os01t0654650-00
Chr01	irgsp1_rep	exon	26534407	26534560	.	+	.	Parent=Os01t0654650-00
Chr01	irgsp1_rep	exon	26534770	26534983	.	+	.	Parent=Os01t0654650-00
Chr01	irgsp1_rep	exon	26535157	26535275	.	+	.	Parent=Os01t0654650-00
Chr01	irgsp1_rep	exon	26535463	26535592	.	+	.	Parent=Os01t0654650-00
Chr01	irgsp1_rep	exon	26535946	26536103	.	+	.	Parent=Os01t0654650-00
Chr01	irgsp1_rep	exon	26536954	26537119	.	+	.	Parent=Os01t0654650-00
Chr01	irgsp1_rep	mRNA	26565249	26565524	.	+	.	ID=Os01t0654800-00;Name=Os01t0654800-00;Locus_id=Os01g0654800;Note=Conserved hypothetical protein.;Transcript_evidence=AK359861 (DDBJ);ORF_evidence=B9EYE1 (UniProt);TENOR=Os01t0654800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	26565249	26565524	.	+	0	Parent=Os01t0654800-00
Chr01	irgsp1_rep	mRNA	26572530	26573815	.	+	.	ID=Os01t0654900-00;Name=Os01t0654900-00;Locus_id=Os01g0654900;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001172487.1 (RefSeq);TENOR=Os01t0654900-00;KEGG=Os01t0654900-00
Chr01	irgsp1_rep	CDS	26572530	26572568	.	+	0	Parent=Os01t0654900-00
Chr01	irgsp1_rep	CDS	26573392	26573538	.	+	0	Parent=Os01t0654900-00
Chr01	irgsp1_rep	CDS	26573702	26573815	.	+	0	Parent=Os01t0654900-00
Chr01	irgsp1_rep	mRNA	26592223	26599632	.	+	.	ID=Os01t0655300-01;Name=Os01t0655300-01;Locus_id=Os01g0655300;RAP-DB Gene Symbol Synonym(s)=SDG705;RAP-DB Gene Name Synonym(s)=SET-domain group protein 705;Oryzabase Gene Symbol Synonym(s)=OsSET2%2C SDG705;Oryzabase Gene Name Synonym(s)=SET protein 2;Note=TRITHORAX-like protein%2C Regulation of H3K4 methylation%2C Regulation of plant height and pollen grain development;Transcript_evidence=AK062870 (truncated);ORF_evidence=B9EYE3;GO=Molecular Function: protein binding (GO:0005515);InterPro=Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Histone-lysine N-methyltransferase ATX (IPR025780),PWWP domain (IPR000313),Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C PHD-finger (IPR019787),Extended PHD (ePHD) domain (IPR034732),ATX3/4/5%2C PHD domain (IPR042011),SET domain (IPR001214),Post-SET domain (IPR003616),Zinc finger%2C PHD-type%2C conserved site (IPR019786);NIAS_FLcDNA=001-108-C05 (truncated);Manual Curation=April 14%2C 2020;Literature_PMID=29473711;Oryzabase=13371;Expression=AK062870;TENOR=Os01t0655300-01;KEGG=Os01t0655300-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	26592223	26593143	.	+	0	Parent=Os01t0655300-01
Chr01	irgsp1_rep	CDS	26593243	26593298	.	+	0	Parent=Os01t0655300-01
Chr01	irgsp1_rep	CDS	26593489	26593618	.	+	1	Parent=Os01t0655300-01
Chr01	irgsp1_rep	CDS	26594138	26594248	.	+	0	Parent=Os01t0655300-01
Chr01	irgsp1_rep	CDS	26594348	26594416	.	+	0	Parent=Os01t0655300-01
Chr01	irgsp1_rep	CDS	26594502	26594567	.	+	0	Parent=Os01t0655300-01
Chr01	irgsp1_rep	CDS	26594656	26594747	.	+	0	Parent=Os01t0655300-01
Chr01	irgsp1_rep	CDS	26594848	26594940	.	+	1	Parent=Os01t0655300-01
Chr01	irgsp1_rep	CDS	26595188	26595323	.	+	1	Parent=Os01t0655300-01
Chr01	irgsp1_rep	CDS	26595444	26595537	.	+	0	Parent=Os01t0655300-01
Chr01	irgsp1_rep	CDS	26595643	26595742	.	+	2	Parent=Os01t0655300-01
Chr01	irgsp1_rep	CDS	26595842	26595966	.	+	1	Parent=Os01t0655300-01
Chr01	irgsp1_rep	CDS	26596339	26596484	.	+	2	Parent=Os01t0655300-01
Chr01	irgsp1_rep	CDS	26596610	26596714	.	+	0	Parent=Os01t0655300-01
Chr01	irgsp1_rep	CDS	26596844	26596908	.	+	0	Parent=Os01t0655300-01
Chr01	irgsp1_rep	CDS	26597113	26597314	.	+	1	Parent=Os01t0655300-01
Chr01	irgsp1_rep	CDS	26597815	26597901	.	+	0	Parent=Os01t0655300-01
Chr01	irgsp1_rep	CDS	26597980	26598036	.	+	0	Parent=Os01t0655300-01
Chr01	irgsp1_rep	CDS	26598111	26598200	.	+	0	Parent=Os01t0655300-01
Chr01	irgsp1_rep	CDS	26598314	26598400	.	+	0	Parent=Os01t0655300-01
Chr01	irgsp1_rep	CDS	26598946	26599020	.	+	0	Parent=Os01t0655300-01
Chr01	irgsp1_rep	CDS	26599105	26599205	.	+	0	Parent=Os01t0655300-01
Chr01	irgsp1_rep	CDS	26599307	26599397	.	+	1	Parent=Os01t0655300-01
Chr01	irgsp1_rep	three_prime_UTR	26599398	26599632	.	+	.	Parent=Os01t0655300-01
Chr01	irgsp1_rep	mRNA	26602273	26608476	.	-	.	ID=Os01t0655400-01;Name=Os01t0655400-01;Locus_id=Os01g0655400;Note=Conserved hypothetical protein.;Transcript_evidence=AK068171 (DDBJ%2C Best hit);ORF_evidence=B8A6V1 (UniProt);NIAS_FLcDNA=J013129E13;Expression=AK068171;TENOR=Os01t0655400-01;KEGG=Os01t0655400-01
Chr01	irgsp1_rep	five_prime_UTR	26608196	26608476	.	-	.	Parent=Os01t0655400-01
Chr01	irgsp1_rep	CDS	26607304	26608195	.	-	0	Parent=Os01t0655400-01
Chr01	irgsp1_rep	CDS	26606026	26606665	.	-	2	Parent=Os01t0655400-01
Chr01	irgsp1_rep	CDS	26603706	26605095	.	-	1	Parent=Os01t0655400-01
Chr01	irgsp1_rep	CDS	26603527	26603619	.	-	0	Parent=Os01t0655400-01
Chr01	irgsp1_rep	CDS	26602312	26603349	.	-	0	Parent=Os01t0655400-01
Chr01	irgsp1_rep	three_prime_UTR	26602273	26602311	.	-	.	Parent=Os01t0655400-01
Chr01	irgsp1_rep	mRNA	26604948	26607490	.	-	.	ID=Os01t0655400-02;Name=Os01t0655400-02;Locus_id=Os01g0655400;Note=Hypothetical conserved gene.;Transcript_evidence=AK069873 (DDBJ%2C Best hit);ORF_evidence=B8A6V1 (UniProt);NIAS_FLcDNA=J023038F23;Expression=AK069873;TENOR=Os01t0655400-02;KEGG=Os01t0655400-02
Chr01	irgsp1_rep	CDS	26607304	26607490	.	-	0	Parent=Os01t0655400-02
Chr01	irgsp1_rep	CDS	26606026	26606665	.	-	2	Parent=Os01t0655400-02
Chr01	irgsp1_rep	CDS	26604948	26605095	.	-	1	Parent=Os01t0655400-02
Chr01	irgsp1_rep	mRNA	26601979	26604359	.	-	.	ID=Os01t0655400-03;Name=Os01t0655400-03;Locus_id=Os01g0655400;Note=Hypothetical conserved gene.;Transcript_evidence=AK060601 (DDBJ%2C Best hit);ORF_evidence=Q5SN80 (UniProt);NIAS_FLcDNA=001-024-H07;Expression=AK060601;TENOR=Os01t0655400-03;KEGG=Os01t0655400-03
Chr01	irgsp1_rep	CDS	26603706	26604359	.	-	0	Parent=Os01t0655400-03
Chr01	irgsp1_rep	CDS	26603527	26603619	.	-	0	Parent=Os01t0655400-03
Chr01	irgsp1_rep	CDS	26602782	26603349	.	-	0	Parent=Os01t0655400-03
Chr01	irgsp1_rep	CDS	26602312	26602703	.	-	2	Parent=Os01t0655400-03
Chr01	irgsp1_rep	three_prime_UTR	26601979	26602311	.	-	.	Parent=Os01t0655400-03
Chr01	irgsp1_rep	mRNA	26611799	26617488	.	+	.	ID=Os01t0655500-01;Name=Os01t0655500-01;Locus_id=Os01g0655500;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK120660 (DDBJ%2C Best hit);ORF_evidence=NP_001147834.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013158F22;Expression=AK120660;TENOR=Os01t0655500-01;KEGG=Os01t0655500-01
Chr01	irgsp1_rep	five_prime_UTR	26611799	26611927	.	+	.	Parent=Os01t0655500-01
Chr01	irgsp1_rep	CDS	26611928	26612185	.	+	0	Parent=Os01t0655500-01
Chr01	irgsp1_rep	CDS	26612282	26612325	.	+	0	Parent=Os01t0655500-01
Chr01	irgsp1_rep	CDS	26612401	26612479	.	+	1	Parent=Os01t0655500-01
Chr01	irgsp1_rep	CDS	26612564	26612686	.	+	0	Parent=Os01t0655500-01
Chr01	irgsp1_rep	CDS	26613042	26613224	.	+	0	Parent=Os01t0655500-01
Chr01	irgsp1_rep	CDS	26613304	26613390	.	+	0	Parent=Os01t0655500-01
Chr01	irgsp1_rep	CDS	26614891	26614997	.	+	0	Parent=Os01t0655500-01
Chr01	irgsp1_rep	CDS	26615129	26615216	.	+	1	Parent=Os01t0655500-01
Chr01	irgsp1_rep	CDS	26615547	26615627	.	+	0	Parent=Os01t0655500-01
Chr01	irgsp1_rep	CDS	26615725	26615801	.	+	0	Parent=Os01t0655500-01
Chr01	irgsp1_rep	CDS	26615925	26616060	.	+	1	Parent=Os01t0655500-01
Chr01	irgsp1_rep	CDS	26616290	26616352	.	+	0	Parent=Os01t0655500-01
Chr01	irgsp1_rep	CDS	26616725	26617351	.	+	0	Parent=Os01t0655500-01
Chr01	irgsp1_rep	three_prime_UTR	26617352	26617488	.	+	.	Parent=Os01t0655500-01
Chr01	irgsp1_rep	mRNA	26617173	26618704	.	+	.	ID=Os01t0655500-02;Name=Os01t0655500-02;Locus_id=Os01g0655500;Note=Similar to protein kinase domain containing protein.;Transcript_evidence=AK108632 (DDBJ%2C Best hit);ORF_evidence=NP_001147834.1 (RefSeq);NIAS_FLcDNA=002-147-F07;Expression=AK108632;TENOR=Os01t0655500-02;KEGG=Os01t0655500-02
Chr01	irgsp1_rep	five_prime_UTR	26617173	26617174	.	+	.	Parent=Os01t0655500-02
Chr01	irgsp1_rep	CDS	26617175	26617351	.	+	0	Parent=Os01t0655500-02
Chr01	irgsp1_rep	three_prime_UTR	26617352	26618704	.	+	.	Parent=Os01t0655500-02
Chr01	irgsp1_rep	mRNA	26628877	26636906	.	+	.	ID=Os01t0655800-01;Name=Os01t0655800-01;Locus_id=Os01g0655800;CGSNL Gene Symbol=LACS5;CGSNL Gene Name=LONG-CHAIN ACYL-COA SYNTHETASE 5;Oryzabase Gene Symbol Synonym(s)=OsLACS5;Oryzabase Gene Name Synonym(s)=long-chain acyl-CoA synthetase 5;Note=Similar to ACS-like protein.;Transcript_evidence=AK067776 (DDBJ%2C Best hit);ORF_evidence=Q2I824 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873),AMP-binding%2C conserved site (IPR020845);NIAS_FLcDNA=J013119K02;Oryzabase=23603;TENOR=Os01t0655800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	26628877	26628877	.	+	.	Parent=Os01t0655800-01
Chr01	irgsp1_rep	CDS	26628878	26629117	.	+	0	Parent=Os01t0655800-01
Chr01	irgsp1_rep	CDS	26629917	26629961	.	+	0	Parent=Os01t0655800-01
Chr01	irgsp1_rep	CDS	26630052	26630141	.	+	0	Parent=Os01t0655800-01
Chr01	irgsp1_rep	CDS	26630330	26630386	.	+	0	Parent=Os01t0655800-01
Chr01	irgsp1_rep	CDS	26630574	26630622	.	+	0	Parent=Os01t0655800-01
Chr01	irgsp1_rep	CDS	26631062	26631138	.	+	2	Parent=Os01t0655800-01
Chr01	irgsp1_rep	CDS	26631660	26631699	.	+	0	Parent=Os01t0655800-01
Chr01	irgsp1_rep	CDS	26631779	26631873	.	+	2	Parent=Os01t0655800-01
Chr01	irgsp1_rep	CDS	26632267	26632431	.	+	0	Parent=Os01t0655800-01
Chr01	irgsp1_rep	CDS	26632519	26632629	.	+	0	Parent=Os01t0655800-01
Chr01	irgsp1_rep	CDS	26632713	26632800	.	+	0	Parent=Os01t0655800-01
Chr01	irgsp1_rep	CDS	26633457	26633523	.	+	2	Parent=Os01t0655800-01
Chr01	irgsp1_rep	CDS	26633730	26633805	.	+	1	Parent=Os01t0655800-01
Chr01	irgsp1_rep	CDS	26633897	26634014	.	+	0	Parent=Os01t0655800-01
Chr01	irgsp1_rep	CDS	26635087	26635332	.	+	2	Parent=Os01t0655800-01
Chr01	irgsp1_rep	CDS	26635698	26635837	.	+	2	Parent=Os01t0655800-01
Chr01	irgsp1_rep	CDS	26636004	26636186	.	+	0	Parent=Os01t0655800-01
Chr01	irgsp1_rep	CDS	26636302	26636421	.	+	0	Parent=Os01t0655800-01
Chr01	irgsp1_rep	CDS	26636674	26636709	.	+	0	Parent=Os01t0655800-01
Chr01	irgsp1_rep	three_prime_UTR	26636710	26636906	.	+	.	Parent=Os01t0655800-01
Chr01	irgsp1_rep	mRNA	26652966	26658299	.	+	.	ID=Os01t0656200-01;Name=Os01t0656200-01;Locus_id=Os01g0656200;RAP-DB Gene Symbol Synonym(s)=OsPP2C8;RAP-DB Gene Name Synonym(s)=protein phosphatase 2C8;Oryzabase Gene Symbol Synonym(s)=OsPP2C08%2C PP2C08%2C OsPP2C8%2C PP2C8%2C OsPP12;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C08%2C protein phosphatase 2C 08%2C protein phosphatase 2C8%2C protein phosphatase 2C 8%2C protein phosphatase 12;Note=Protein phosphatase 2C family protein%2C Salinity tolerance in the seedling stage;Transcript_evidence=AK068272;ORF_evidence=Q5SN75;GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: cation binding (GO:0043169);InterPro=PPM-type phosphatase domain superfamily (IPR036457),PPM-type phosphatase domain (IPR001932),PPM-type phosphatase%2C divalent cation binding (IPR000222);NIAS_FLcDNA=J013146J07;Manual Curation=January 21%2C 2020;Literature_PMID=31883029;Oryzabase=17886;Expression=AK068272;TENOR=Os01t0656200-01;KEGG=Os01t0656200-01 (EC:3.1.3.16)
Chr01	irgsp1_rep	five_prime_UTR	26652966	26652993	.	+	.	Parent=Os01t0656200-01
Chr01	irgsp1_rep	CDS	26652994	26653767	.	+	0	Parent=Os01t0656200-01
Chr01	irgsp1_rep	CDS	26657195	26657300	.	+	0	Parent=Os01t0656200-01
Chr01	irgsp1_rep	CDS	26657687	26658018	.	+	2	Parent=Os01t0656200-01
Chr01	irgsp1_rep	three_prime_UTR	26658019	26658299	.	+	.	Parent=Os01t0656200-01
Chr01	irgsp1_rep	mRNA	26653444	26657999	.	-	.	ID=Os01t0656250-00;Name=Os01t0656250-00;Locus_id=Os01g0656250;Note=Hypothetical gene.;Transcript_evidence=BT086014 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0656250-00;KEGG=Os01t0656250-00
Chr01	irgsp1_rep	five_prime_UTR	26657949	26657999	.	-	.	Parent=Os01t0656250-00
Chr01	irgsp1_rep	CDS	26657694	26657948	.	-	0	Parent=Os01t0656250-00
Chr01	irgsp1_rep	three_prime_UTR	26657651	26657693	.	-	.	Parent=Os01t0656250-00
Chr01	irgsp1_rep	three_prime_UTR	26657073	26657269	.	-	.	Parent=Os01t0656250-00
Chr01	irgsp1_rep	three_prime_UTR	26653444	26653796	.	-	.	Parent=Os01t0656250-00
Chr01	irgsp1_rep	mRNA	26679997	26680317	.	-	.	ID=Os01t0656300-00;Name=Os01t0656300-00;Locus_id=Os01g0656300;Note=Conserved hypothetical protein.;Transcript_evidence=EU976892 (DDBJ);ORF_evidence=Q5SN04 (UniProt);TENOR=Os01t0656300-00
Chr01	irgsp1_rep	CDS	26679997	26680317	.	-	0	Parent=Os01t0656300-00
Chr01	irgsp1_rep	mRNA	26687377	26688416	.	-	.	ID=Os01t0656400-00;Name=Os01t0656400-00;Locus_id=Os01g0656400;CGSNL Gene Symbol=WRKY15;CGSNL Gene Name=WRKY GENE 15;Oryzabase Gene Symbol Synonym(s)=OsWRKY15;Oryzabase Gene Name Synonym(s)=Rice WRKY gene15;Note=Similar to WRKY transcription factor 15.;Transcript_evidence=AY676926 (DDBJ%2C Best hit);ORF_evidence=Q6IER6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6526;Expression=AY676926;TENOR=Os01t0656400-00;KEGG=Os01t0656400-00
Chr01	irgsp1_rep	CDS	26688181	26688416	.	-	0	Parent=Os01t0656400-00
Chr01	irgsp1_rep	CDS	26687946	26688071	.	-	1	Parent=Os01t0656400-00
Chr01	irgsp1_rep	CDS	26687377	26687839	.	-	1	Parent=Os01t0656400-00
Chr01	irgsp1_rep	mRNA	26699254	26701573	.	-	.	ID=Os01t0656600-01;Name=Os01t0656600-01;Locus_id=Os01g0656600;Note=Conserved hypothetical protein.;Transcript_evidence=AK106271 (DDBJ%2C Best hit);ORF_evidence=B9EYF0 (UniProt);NIAS_FLcDNA=002-100-G09;TENOR=Os01t0656600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	26701573	26701573	.	-	.	Parent=Os01t0656600-01
Chr01	irgsp1_rep	CDS	26699473	26701572	.	-	0	Parent=Os01t0656600-01
Chr01	irgsp1_rep	three_prime_UTR	26699254	26699472	.	-	.	Parent=Os01t0656600-01
Chr01	irgsp1_rep	mRNA	26717834	26722446	.	+	.	ID=Os01t0656900-01;Name=Os01t0656900-01;Locus_id=Os01g0656900;Note=Conserved hypothetical protein.;Transcript_evidence=AK103616 (DDBJ%2C Best hit);ORF_evidence=Q5SMZ9 (UniProt);NIAS_FLcDNA=J033133K24;Expression=AK103616;TENOR=Os01t0656900-01;KEGG=Os01t0656900-01
Chr01	irgsp1_rep	five_prime_UTR	26717834	26717886	.	+	.	Parent=Os01t0656900-01
Chr01	irgsp1_rep	CDS	26717887	26720039	.	+	0	Parent=Os01t0656900-01
Chr01	irgsp1_rep	CDS	26721768	26721948	.	+	1	Parent=Os01t0656900-01
Chr01	irgsp1_rep	three_prime_UTR	26721949	26722446	.	+	.	Parent=Os01t0656900-01
Chr01	irgsp1_rep	mRNA	26722728	26724906	.	+	.	ID=Os01t0657000-01;Name=Os01t0657000-01;Locus_id=Os01g0657000;CGSNL Gene Symbol=AGP16;CGSNL Gene Name=ARABINOGALACTAN PROTEIN 16;Oryzabase Gene Symbol Synonym(s)=OsAGP16;Oryzabase Gene Name Synonym(s)=Arabinogalactan protein 16;Note=Protein of unknown function DUF1070 family protein.;Transcript_evidence=AK108727 (DDBJ%2C Best hit);ORF_evidence=NP_001148394.1 (RefSeq);InterPro=Arabinogalactan peptide%2C AGP (IPR009424);NIAS_FLcDNA=002-150-C11;Oryzabase=11309;Expression=AK108727;TENOR=Os01t0657000-01;KEGG=Os01t0657000-01
Chr01	irgsp1_rep	five_prime_UTR	26722728	26722874	.	+	.	Parent=Os01t0657000-01
Chr01	irgsp1_rep	CDS	26722875	26722977	.	+	0	Parent=Os01t0657000-01
Chr01	irgsp1_rep	CDS	26724409	26724515	.	+	2	Parent=Os01t0657000-01
Chr01	irgsp1_rep	three_prime_UTR	26724516	26724906	.	+	.	Parent=Os01t0657000-01
Chr01	irgsp1_rep	mRNA	26724948	26726953	.	-	.	ID=Os01t0657100-01;Name=Os01t0657100-01;Locus_id=Os01g0657100;RAP-DB Gene Symbol Synonym(s)=PT11%2C OsPT11%2C PHT1-11%2C OsPht1%3B11%2C ORYsa%3BPHT1%3B11;RAP-DB Gene Name Synonym(s)=PHOSPHATE TRANSPORTER 11%2C Inorganic phosphate transporter 1-11%2C PHOSPHATE TRANSPORTER1%3B11;CGSNL Gene Symbol=PT11;CGSNL Gene Name=PHOSPHATE TRANSPORTER 11;Oryzabase Gene Symbol Synonym(s)=OsPT11%2C PHT1-11%2C OsPht1%3B11%2C ORYsa%3BPHT1%3B11;Oryzabase Gene Name Synonym(s)=Inorganic phosphate transporter 1-11%2C PHOSPHATE TRANSPORTER1%3B11;Note=Pi transporter%2C Arbuscular mycorrhiza (AM)-specific signaling pathway;Transcript_evidence=AF536971 (DDBJ),AF536960 (DDBJ);ORF_evidence=Q94DB8 (UniProt);GO=Biological Process: phosphate ion transport (GO:0006817),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: inorganic phosphate transmembrane transporter activity (GO:0005315),Molecular Function: transmembrane transporter activity (GO:0022857);InterPro=Phosphate permease (IPR004738),General substrate transporter (IPR005828),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);Manual Curation=June 24%2C 2010;Literature_PMID=12271140,19033527;Oryzabase=8226;TENOR=Os01t0657100-01
Chr01	irgsp1_rep	CDS	26725824	26726953	.	-	0	Parent=Os01t0657100-01
Chr01	irgsp1_rep	CDS	26725194	26725731	.	-	1	Parent=Os01t0657100-01
Chr01	irgsp1_rep	three_prime_UTR	26724948	26725193	.	-	.	Parent=Os01t0657100-01
Chr01	irgsp1_rep	mRNA	26725313	26726985	.	+	.	ID=Os01t0657250-00;Name=Os01t0657250-00;Locus_id=Os01g0657250;Note=Hypothetical gene.;Transcript_evidence=BT086132 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0657250-00
Chr01	irgsp1_rep	five_prime_UTR	26725313	26725646	.	+	.	Parent=Os01t0657250-00
Chr01	irgsp1_rep	CDS	26725647	26725725	.	+	0	Parent=Os01t0657250-00
Chr01	irgsp1_rep	CDS	26725818	26726470	.	+	2	Parent=Os01t0657250-00
Chr01	irgsp1_rep	three_prime_UTR	26726471	26726985	.	+	.	Parent=Os01t0657250-00
Chr01	irgsp1_rep	mRNA	26734068	26735164	.	-	.	ID=Os01t0657400-00;Name=Os01t0657400-00;Locus_id=Os01g0657400;CGSNL Gene Symbol=ERF54;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 54;Oryzabase Gene Symbol Synonym(s)=OsERF#054%2C OsERF054%2C OsERF54%2C AP2/EREBP#162%2C AP2/EREBP162;Oryzabase Gene Name Synonym(s)=ethylene response factor 54%2C APETALA2/ethylene-responsive element binding protein 162;Note=Similar to Ethylene-responsive transcription factor 5 (Ethylene-responsive element binding factor 5) (EREBP-5) (AtERF5).;Transcript_evidence=AY339377 (DDBJ%2C Best hit);ORF_evidence=Q7XBH2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);Oryzabase=10570;Expression=AY339377;TENOR=Os01t0657400-00;KEGG=Os01t0657400-00
Chr01	irgsp1_rep	five_prime_UTR	26735126	26735164	.	-	.	Parent=Os01t0657400-00
Chr01	irgsp1_rep	CDS	26734981	26735125	.	-	0	Parent=Os01t0657400-00
Chr01	irgsp1_rep	CDS	26734226	26734959	.	-	2	Parent=Os01t0657400-00
Chr01	irgsp1_rep	three_prime_UTR	26734068	26734225	.	-	.	Parent=Os01t0657400-00
Chr01	irgsp1_rep	mRNA	26734307	26735980	.	+	.	ID=Os01t0657801-00;Name=Os01t0657801-00;Locus_id=Os01g0657801;Note=Hypothetical gene.;Transcript_evidence=BT055241 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0657801-00;KEGG=Os01t0657801-00
Chr01	irgsp1_rep	CDS	26734307	26735155	.	+	0	Parent=Os01t0657801-00
Chr01	irgsp1_rep	three_prime_UTR	26735156	26735980	.	+	.	Parent=Os01t0657801-00
Chr01	irgsp1_rep	mRNA	26767672	26769190	.	-	.	ID=Os01t0658300-01;Name=Os01t0658300-01;Locus_id=Os01g0658300;Note=Conserved hypothetical protein.;Transcript_evidence=AK107390 (DDBJ%2C Best hit);ORF_evidence=A2X9P8 (UniProt);NIAS_FLcDNA=002-127-C11;Expression=AK107390;TENOR=Os01t0658300-01;KEGG=Os01t0658300-01
Chr01	irgsp1_rep	five_prime_UTR	26768938	26769190	.	-	.	Parent=Os01t0658300-01
Chr01	irgsp1_rep	CDS	26767945	26768937	.	-	0	Parent=Os01t0658300-01
Chr01	irgsp1_rep	three_prime_UTR	26767672	26767944	.	-	.	Parent=Os01t0658300-01
Chr01	irgsp1_rep	mRNA	26781113	26784353	.	-	.	ID=Os01t0658400-01;Name=Os01t0658400-01;Locus_id=Os01g0658400;RAP-DB Gene Symbol Synonym(s)=UBC5A%2C OsUBC5a%2C OsUBC14%2C UBC14;RAP-DB Gene Name Synonym(s)=UBIQUITIN CONJUGATING ENZYME 5A%2C Ubiquitin conjugating enzyme 5a%2C Ubiquitin-conjugating enzyme 14;CGSNL Gene Symbol=UBC5A;CGSNL Gene Name=UBIQUITIN CONJUGATING ENZYME 5A;Oryzabase Gene Symbol Synonym(s)=OsUBC5a%2C OsUBC14%2C UBC14;Oryzabase Gene Name Synonym(s)=Ubiquitin conjugating enzyme 5a%2C Ubiquitin-conjugating enzyme 14;Note=Ubiquitin-conjugating enzyme E2;Transcript_evidence=AB074411,AK063826,AK099284;ORF_evidence=Q8S920;InterPro=Ubiquitin-conjugating enzyme/RWD-like (IPR016135),Ubiquitin-conjugating enzyme E2 (IPR000608),Ubiquitin-conjugating enzyme%2C active site (IPR023313);NIAS_FLcDNA=001-122-A09, J023129D13;Manual Curation=March 14%2C 2016;Literature_PMID=12028574,25902049;Oryzabase=13912;TENOR=Os01t0658400-01
Chr01	irgsp1_rep	five_prime_UTR	26784267	26784353	.	-	.	Parent=Os01t0658400-01
Chr01	irgsp1_rep	five_prime_UTR	26784144	26784171	.	-	.	Parent=Os01t0658400-01
Chr01	irgsp1_rep	CDS	26784074	26784143	.	-	0	Parent=Os01t0658400-01
Chr01	irgsp1_rep	CDS	26782403	26782530	.	-	2	Parent=Os01t0658400-01
Chr01	irgsp1_rep	CDS	26781571	26781675	.	-	0	Parent=Os01t0658400-01
Chr01	irgsp1_rep	CDS	26781321	26781461	.	-	0	Parent=Os01t0658400-01
Chr01	irgsp1_rep	three_prime_UTR	26781113	26781320	.	-	.	Parent=Os01t0658400-01
Chr01	irgsp1_rep	mRNA	26781324	26784144	.	+	.	ID=Os01t0658450-00;Name=Os01t0658450-00;Locus_id=Os01g0658450;Note=Non-protein coding transcript.;Transcript_evidence=BT086907 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0658450-00
Chr01	irgsp1_rep	exon	26781324	26781432	.	+	.	Parent=Os01t0658450-00
Chr01	irgsp1_rep	exon	26781543	26781661	.	+	.	Parent=Os01t0658450-00
Chr01	irgsp1_rep	exon	26782389	26782532	.	+	.	Parent=Os01t0658450-00
Chr01	irgsp1_rep	exon	26784072	26784144	.	+	.	Parent=Os01t0658450-00
Chr01	irgsp1_rep	mRNA	26785268	26788665	.	-	.	ID=Os01t0658500-01;Name=Os01t0658500-01;Locus_id=Os01g0658500;Note=ESCRT-II complex%2C vps25 subunit domain containing protein.;Transcript_evidence=AK058491 (DDBJ%2C Best hit);ORF_evidence=B6TCL9 (UniProt);InterPro=ESCRT-II complex%2C vps25 subunit (IPR008570),ESCRT-II complex%2C Vps25 subunit%2C N-terminal winged helix (IPR014041);NIAS_FLcDNA=001-016-E03;Expression=AK058491;TENOR=Os01t0658500-01;KEGG=Os01t0658500-01
Chr01	irgsp1_rep	five_prime_UTR	26788391	26788665	.	-	.	Parent=Os01t0658500-01
Chr01	irgsp1_rep	CDS	26788332	26788390	.	-	0	Parent=Os01t0658500-01
Chr01	irgsp1_rep	CDS	26787224	26787363	.	-	1	Parent=Os01t0658500-01
Chr01	irgsp1_rep	CDS	26786919	26786972	.	-	2	Parent=Os01t0658500-01
Chr01	irgsp1_rep	CDS	26786778	26786801	.	-	2	Parent=Os01t0658500-01
Chr01	irgsp1_rep	CDS	26786584	26786594	.	-	2	Parent=Os01t0658500-01
Chr01	irgsp1_rep	three_prime_UTR	26786519	26786583	.	-	.	Parent=Os01t0658500-01
Chr01	irgsp1_rep	three_prime_UTR	26785268	26785603	.	-	.	Parent=Os01t0658500-01
Chr01	irgsp1_rep	mRNA	26785190	26788557	.	-	.	ID=Os01t0658500-02;Name=Os01t0658500-02;Locus_id=Os01g0658500;Note=Similar to Vacuolar protein sorting protein 25.;Transcript_evidence=AK069050 (DDBJ%2C Best hit);ORF_evidence=B6SHU1 (UniProt);InterPro=ESCRT-II complex%2C vps25 subunit (IPR008570),ESCRT-II complex%2C Vps25 subunit%2C C-terminal winged helix (IPR014040),ESCRT-II complex%2C Vps25 subunit%2C N-terminal winged helix (IPR014041);NIAS_FLcDNA=J023003I21;Expression=AK069050;TENOR=Os01t0658500-02;KEGG=Os01t0658500-02
Chr01	irgsp1_rep	five_prime_UTR	26788391	26788557	.	-	.	Parent=Os01t0658500-02
Chr01	irgsp1_rep	CDS	26788332	26788390	.	-	0	Parent=Os01t0658500-02
Chr01	irgsp1_rep	CDS	26787224	26787363	.	-	1	Parent=Os01t0658500-02
Chr01	irgsp1_rep	CDS	26786919	26786972	.	-	2	Parent=Os01t0658500-02
Chr01	irgsp1_rep	CDS	26786713	26786801	.	-	2	Parent=Os01t0658500-02
Chr01	irgsp1_rep	CDS	26786519	26786594	.	-	0	Parent=Os01t0658500-02
Chr01	irgsp1_rep	CDS	26785482	26785603	.	-	2	Parent=Os01t0658500-02
Chr01	irgsp1_rep	three_prime_UTR	26785190	26785481	.	-	.	Parent=Os01t0658500-02
Chr01	irgsp1_rep	mRNA	26790255	26791689	.	+	.	ID=Os01t0658600-00;Name=Os01t0658600-00;Locus_id=Os01g0658600;Note=Similar to SBH2 (SPHINGOID BASE HYDROXYLASE 2)%3B catalytic/ sphingosine hydroxylase.;Transcript_evidence=BT009316 (DDBJ);ORF_evidence=NP_563944.1 (RefSeq);TENOR=Os01t0658600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	26790255	26790275	.	+	.	Parent=Os01t0658600-00
Chr01	irgsp1_rep	CDS	26790276	26790506	.	+	0	Parent=Os01t0658600-00
Chr01	irgsp1_rep	CDS	26791102	26791689	.	+	0	Parent=Os01t0658600-00
Chr01	irgsp1_rep	mRNA	26791785	26795939	.	-	.	ID=Os01t0658700-01;Name=Os01t0658700-01;Locus_id=Os01g0658700;Note=Glycoside hydrolase-type carbohydrate-binding%2C subgroup domain containing protein.;Transcript_evidence=AK101948 (DDBJ%2C Best hit);ORF_evidence=NP_001149116.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: isomerase activity (GO:0016853),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Aldose 1-epimerase (IPR008183),Glycoside hydrolase-type carbohydrate-binding (IPR011013),Glycoside hydrolase-type carbohydrate-binding%2C subgroup (IPR014718);NIAS_FLcDNA=J033075D19;Expression=AK101948;TENOR=Os01t0658700-01;KEGG=Os01t0658700-01
Chr01	irgsp1_rep	five_prime_UTR	26795260	26795939	.	-	.	Parent=Os01t0658700-01
Chr01	irgsp1_rep	CDS	26795152	26795259	.	-	0	Parent=Os01t0658700-01
Chr01	irgsp1_rep	CDS	26794943	26795017	.	-	0	Parent=Os01t0658700-01
Chr01	irgsp1_rep	CDS	26794284	26794340	.	-	0	Parent=Os01t0658700-01
Chr01	irgsp1_rep	CDS	26793976	26794139	.	-	0	Parent=Os01t0658700-01
Chr01	irgsp1_rep	CDS	26793153	26793287	.	-	1	Parent=Os01t0658700-01
Chr01	irgsp1_rep	CDS	26792732	26792834	.	-	1	Parent=Os01t0658700-01
Chr01	irgsp1_rep	CDS	26792363	26792462	.	-	0	Parent=Os01t0658700-01
Chr01	irgsp1_rep	CDS	26792028	26792230	.	-	2	Parent=Os01t0658700-01
Chr01	irgsp1_rep	three_prime_UTR	26791785	26792027	.	-	.	Parent=Os01t0658700-01
Chr01	irgsp1_rep	mRNA	26791783	26795761	.	-	.	ID=Os01t0658700-02;Name=Os01t0658700-02;Locus_id=Os01g0658700;Note=Glycoside hydrolase-type carbohydrate-binding%2C subgroup domain containing protein.;Transcript_evidence=AK106555 (DDBJ%2C Best hit);ORF_evidence=NP_001149116.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: isomerase activity (GO:0016853),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Aldose 1-epimerase (IPR008183),Glycoside hydrolase-type carbohydrate-binding (IPR011013),Glycoside hydrolase-type carbohydrate-binding%2C subgroup (IPR014718);NIAS_FLcDNA=002-108-H02;TENOR=Os01t0658700-02
Chr01	irgsp1_rep	five_prime_UTR	26795260	26795761	.	-	.	Parent=Os01t0658700-02
Chr01	irgsp1_rep	CDS	26795152	26795259	.	-	0	Parent=Os01t0658700-02
Chr01	irgsp1_rep	CDS	26794943	26795017	.	-	0	Parent=Os01t0658700-02
Chr01	irgsp1_rep	CDS	26794284	26794340	.	-	0	Parent=Os01t0658700-02
Chr01	irgsp1_rep	CDS	26793976	26794139	.	-	0	Parent=Os01t0658700-02
Chr01	irgsp1_rep	CDS	26793153	26793287	.	-	1	Parent=Os01t0658700-02
Chr01	irgsp1_rep	CDS	26792732	26792834	.	-	1	Parent=Os01t0658700-02
Chr01	irgsp1_rep	CDS	26792363	26792462	.	-	0	Parent=Os01t0658700-02
Chr01	irgsp1_rep	CDS	26792028	26792230	.	-	2	Parent=Os01t0658700-02
Chr01	irgsp1_rep	three_prime_UTR	26791783	26792027	.	-	.	Parent=Os01t0658700-02
Chr01	irgsp1_rep	mRNA	26792044	26795018	.	+	.	ID=Os01t0658800-00;Name=Os01t0658800-00;Locus_id=Os01g0658800;Note=Hypothetical protein.;Transcript_evidence=tplb0033p24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0658800-00
Chr01	irgsp1_rep	five_prime_UTR	26792044	26792219	.	+	.	Parent=Os01t0658800-00
Chr01	irgsp1_rep	five_prime_UTR	26792350	26792464	.	+	.	Parent=Os01t0658800-00
Chr01	irgsp1_rep	five_prime_UTR	26792737	26792848	.	+	.	Parent=Os01t0658800-00
Chr01	irgsp1_rep	five_prime_UTR	26793165	26793289	.	+	.	Parent=Os01t0658800-00
Chr01	irgsp1_rep	five_prime_UTR	26793978	26794006	.	+	.	Parent=Os01t0658800-00
Chr01	irgsp1_rep	CDS	26794007	26794147	.	+	0	Parent=Os01t0658800-00
Chr01	irgsp1_rep	CDS	26794294	26794342	.	+	0	Parent=Os01t0658800-00
Chr01	irgsp1_rep	CDS	26794936	26795018	.	+	2	Parent=Os01t0658800-00
Chr01	irgsp1_rep	mRNA	26800095	26805467	.	-	.	ID=Os01t0658900-01;Name=Os01t0658900-01;Locus_id=Os01g0658900;CGSNL Gene Symbol=OSBZ8;CGSNL Gene Name=BZIP PROTEIN 8;Oryzabase Gene Symbol Synonym(s)=OsBZ8%2C OsbZIP05%2C OsGBF1%2C GBF1%2C OsGBF1a%2C OsGBF1b;Oryzabase Gene Name Synonym(s)=bZIP transcription factor 05%2C G-box-binding factor 1;Note=OSBZ8.;Transcript_evidence=AK121925 (DDBJ%2C Best hit);ORF_evidence=Q40645 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616),G-box binding%2C MFMR (IPR012900);NIAS_FLcDNA=J033106G09;Oryzabase=8411;Expression=AK121925;TENOR=Os01t0658900-01;KEGG=Os01t0658900-01
Chr01	irgsp1_rep	five_prime_UTR	26805361	26805467	.	-	.	Parent=Os01t0658900-01
Chr01	irgsp1_rep	five_prime_UTR	26803594	26803609	.	-	.	Parent=Os01t0658900-01
Chr01	irgsp1_rep	CDS	26803534	26803593	.	-	0	Parent=Os01t0658900-01
Chr01	irgsp1_rep	CDS	26803247	26803291	.	-	0	Parent=Os01t0658900-01
Chr01	irgsp1_rep	CDS	26803059	26803151	.	-	0	Parent=Os01t0658900-01
Chr01	irgsp1_rep	CDS	26802896	26802979	.	-	0	Parent=Os01t0658900-01
Chr01	irgsp1_rep	CDS	26802269	26802396	.	-	0	Parent=Os01t0658900-01
Chr01	irgsp1_rep	CDS	26802111	26802156	.	-	1	Parent=Os01t0658900-01
Chr01	irgsp1_rep	CDS	26801972	26802020	.	-	0	Parent=Os01t0658900-01
Chr01	irgsp1_rep	CDS	26801599	26801756	.	-	2	Parent=Os01t0658900-01
Chr01	irgsp1_rep	CDS	26801000	26801077	.	-	0	Parent=Os01t0658900-01
Chr01	irgsp1_rep	CDS	26800751	26800876	.	-	0	Parent=Os01t0658900-01
Chr01	irgsp1_rep	CDS	26800434	26800649	.	-	0	Parent=Os01t0658900-01
Chr01	irgsp1_rep	three_prime_UTR	26800095	26800433	.	-	.	Parent=Os01t0658900-01
Chr01	irgsp1_rep	mRNA	26811872	26816519	.	+	.	ID=Os01t0659200-01;Name=Os01t0659200-01;Locus_id=Os01g0659200;CGSNL Gene Symbol=VATPE;CGSNL Gene Name=V-ATPASE SUBUNIT E;Oryzabase Gene Symbol Synonym(s)=v-ATP-E;Oryzabase Gene Name Synonym(s)=vacuolar ATP synthase subunit E;Note=Similar to Vacuolar ATP synthase subunit E (EC 3.6.3.14) (V-ATPase E subunit) (Vacuolar proton pump E subunit).;Transcript_evidence=AK071200 (DDBJ%2C Best hit);ORF_evidence=Q2L9B8 (UniProt);GO=Biological Process: ATP hydrolysis coupled proton transport (GO:0015991),Cellular Component: proton-transporting two-sector ATPase complex%2C catalytic domain (GO:0033178),Molecular Function: proton-transporting ATPase activity%2C rotational mechanism (GO:0046961);InterPro=ATPase%2C V1/A1 complex%2C subunit E (IPR002842);NIAS_FLcDNA=J023086K07;Oryzabase=13368;Expression=AK071200;TENOR=Os01t0659200-01;KEGG=Os01t0659200-01 (EC:3.6.3.14)
Chr01	irgsp1_rep	five_prime_UTR	26811872	26812070	.	+	.	Parent=Os01t0659200-01
Chr01	irgsp1_rep	CDS	26812071	26812172	.	+	0	Parent=Os01t0659200-01
Chr01	irgsp1_rep	CDS	26813872	26813972	.	+	0	Parent=Os01t0659200-01
Chr01	irgsp1_rep	CDS	26814618	26814774	.	+	1	Parent=Os01t0659200-01
Chr01	irgsp1_rep	CDS	26815128	26815324	.	+	0	Parent=Os01t0659200-01
Chr01	irgsp1_rep	CDS	26815930	26816029	.	+	1	Parent=Os01t0659200-01
Chr01	irgsp1_rep	CDS	26816243	26816278	.	+	0	Parent=Os01t0659200-01
Chr01	irgsp1_rep	three_prime_UTR	26816279	26816519	.	+	.	Parent=Os01t0659200-01
Chr01	irgsp1_rep	mRNA	26822203	26823850	.	-	.	ID=Os01t0659400-01;Name=Os01t0659400-01;Locus_id=Os01g0659400;RAP-DB Gene Symbol Synonym(s)=osa-miR319a%2C Osa-MIR319a;CGSNL Gene Symbol=MIR319A;CGSNL Gene Name=MICRORNA319A;Oryzabase Gene Symbol Synonym(s)=OsmiR319a%2C Osa-miR319a%2C osa-MIR319aosa-miR319a osa-miR319a-3p osa-miR319a-3p.2-3p;Oryzabase Gene Name Synonym(s)=rice microRNA319a%2C MicroRNA319a;Note=Primary microRNA of osa-miR319a%3B Target gene(s): TCP genes (Os01g0213800%2C Os03g0785800%2C Os01g0755500%2C Os12g0616400%2C Os07g0152000)%2C Leaf morphogenesis%2C Cold tolerance;Transcript_evidence=AK064418;ORF_evidence=NONE;NIAS_FLcDNA=002-110-B04;Manual Curation=December 27%2C 2017;Literature_PMID=23651319;Oryzabase=11691;TENOR=Os01t0659400-01
Chr01	irgsp1_rep	exon	26823672	26823850	.	-	.	Parent=Os01t0659400-01
Chr01	irgsp1_rep	exon	26822203	26823564	.	-	.	Parent=Os01t0659400-01
Chr01	irgsp1_rep	mRNA	26862081	26863434	.	+	.	ID=Os01t0659800-01;Name=Os01t0659800-01;Locus_id=Os01g0659800;Note=C2 calcium-dependent membrane targeting domain containing protein.;Transcript_evidence=AK109718 (DDBJ%2C Best hit);ORF_evidence=NP_001152648.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973);NIAS_FLcDNA=002-146-A02;Expression=AK109718;TENOR=Os01t0659800-01;KEGG=Os01t0659800-01
Chr01	irgsp1_rep	five_prime_UTR	26862081	26862209	.	+	.	Parent=Os01t0659800-01
Chr01	irgsp1_rep	CDS	26862210	26863100	.	+	0	Parent=Os01t0659800-01
Chr01	irgsp1_rep	three_prime_UTR	26863101	26863434	.	+	.	Parent=Os01t0659800-01
Chr01	irgsp1_rep	mRNA	26872217	26875031	.	+	.	ID=Os01t0659900-01;Name=Os01t0659900-01;Locus_id=Os01g0659900;RAP-DB Gene Symbol Synonym(s)=OsFBK1;RAP-DB Gene Name Synonym(s)=Oryza sativa F-box Kelch 1;Oryzabase Gene Symbol Synonym(s)=OsFbox033%2C OsFbox33%2C Fbox33%2C Os_F0114%2C OsFBK1%2C FBK1;Oryzabase Gene Name Synonym(s)=F-box protein 33%2C F-box Kelch 1;Note=Kelch-domain-containing F-box protein%2C Component of an SCF E3 ligase%2C Regulation of anther and root secondary cell wall thickenings%2C Regulation of lignification;Transcript_evidence=AK121359;ORF_evidence=Q5SMS6;GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box-like domain superfamily (IPR036047),Galactose oxidase/kelch%2C beta-propeller (IPR011043),F-box domain (IPR001810);NIAS_FLcDNA=J023123E18;Manual Curation=March 9%2C 2018;Literature_PMID=29295941;Oryzabase=16834;Expression=AK121359;TENOR=Os01t0659900-01;KEGG=Os01t0659900-01
Chr01	irgsp1_rep	five_prime_UTR	26872217	26872534	.	+	.	Parent=Os01t0659900-01
Chr01	irgsp1_rep	five_prime_UTR	26873370	26873376	.	+	.	Parent=Os01t0659900-01
Chr01	irgsp1_rep	CDS	26873377	26874612	.	+	0	Parent=Os01t0659900-01
Chr01	irgsp1_rep	three_prime_UTR	26874613	26875031	.	+	.	Parent=Os01t0659900-01
Chr01	irgsp1_rep	mRNA	26878591	26879891	.	-	.	ID=Os01t0660000-01;Name=Os01t0660000-01;Locus_id=Os01g0660000;Note=Conserved hypothetical protein.;Transcript_evidence=AK064265 (DDBJ%2C Best hit);ORF_evidence=Q6Z593 (UniProt);NIAS_FLcDNA=002-105-D11;TENOR=Os01t0660000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	26879830	26879891	.	-	.	Parent=Os01t0660000-01
Chr01	irgsp1_rep	CDS	26879578	26879829	.	-	0	Parent=Os01t0660000-01
Chr01	irgsp1_rep	three_prime_UTR	26878591	26879577	.	-	.	Parent=Os01t0660000-01
Chr01	irgsp1_rep	mRNA	26878893	26880059	.	+	.	ID=Os01t0660100-01;Name=Os01t0660100-01;Locus_id=Os01g0660100;Note=Conserved hypothetical protein.;Transcript_evidence=AK108487 (DDBJ%2C Best hit);ORF_evidence=B9FS42 (UniProt);NIAS_FLcDNA=002-143-F10;TENOR=Os01t0660100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	26878893	26879575	.	+	.	Parent=Os01t0660100-01
Chr01	irgsp1_rep	CDS	26879576	26879710	.	+	0	Parent=Os01t0660100-01
Chr01	irgsp1_rep	three_prime_UTR	26879711	26880059	.	+	.	Parent=Os01t0660100-01
Chr01	irgsp1_rep	mRNA	26885484	26886719	.	+	.	ID=Os01t0660200-01;Name=Os01t0660200-01;Locus_id=Os01g0660200;Oryzabase Gene Symbol Synonym(s)=C10728%2C OsChib3a%2C Chib3a%2C OsPR31%2C PR31;Oryzabase Gene Name Synonym(s)=pathogenesis-related 31;Note=Acidic class III chitinase OsChib3a precursor (Chitinase) (EC 3.2.1.14).;Transcript_evidence=AK100973 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 18%2C catalytic domain (IPR001223),Glycoside hydrolase%2C chitinase active site (IPR001579),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J023143D03;Oryzabase=13799;Expression=AK100973;TENOR=Os01t0660200-01;KEGG=Os01t0660200-01 (EC:3.2.1.14)
Chr01	irgsp1_rep	five_prime_UTR	26885484	26885561	.	+	.	Parent=Os01t0660200-01
Chr01	irgsp1_rep	CDS	26885562	26886467	.	+	0	Parent=Os01t0660200-01
Chr01	irgsp1_rep	three_prime_UTR	26886468	26886719	.	+	.	Parent=Os01t0660200-01
Chr01	irgsp1_rep	mRNA	26888425	26895926	.	-	.	ID=Os01t0660300-01;Name=Os01t0660300-01;Locus_id=Os01g0660300;Note=Similar to Pyruvate kinase.;Transcript_evidence=AK106457 (DDBJ%2C Best hit);ORF_evidence=A5C814 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyruvate kinase activity (GO:0004743),Molecular Function: potassium ion binding (GO:0030955);InterPro=Pyruvate kinase (IPR001697),Pyruvate kinase-like%2C insert domain (IPR011037),Pyruvate kinase%2C barrel (IPR015793),Pyruvate kinase%2C alpha/beta (IPR015794),Pyruvate kinase%2C C-terminal (IPR015795),Pyruvate kinase%2C beta-barrel insert domain (IPR015806),Pyruvate/Phosphoenolpyruvate kinase (IPR015813),Pyruvate kinase%2C active site (IPR018209);NIAS_FLcDNA=002-103-G01;TENOR=Os01t0660300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	26895925	26895926	.	-	.	Parent=Os01t0660300-01
Chr01	irgsp1_rep	CDS	26895768	26895924	.	-	0	Parent=Os01t0660300-01
Chr01	irgsp1_rep	CDS	26893157	26893291	.	-	2	Parent=Os01t0660300-01
Chr01	irgsp1_rep	CDS	26892352	26892486	.	-	2	Parent=Os01t0660300-01
Chr01	irgsp1_rep	CDS	26892170	26892280	.	-	2	Parent=Os01t0660300-01
Chr01	irgsp1_rep	CDS	26892000	26892088	.	-	2	Parent=Os01t0660300-01
Chr01	irgsp1_rep	CDS	26891746	26891808	.	-	0	Parent=Os01t0660300-01
Chr01	irgsp1_rep	CDS	26891420	26891552	.	-	0	Parent=Os01t0660300-01
Chr01	irgsp1_rep	CDS	26890454	26890517	.	-	2	Parent=Os01t0660300-01
Chr01	irgsp1_rep	CDS	26889558	26889666	.	-	1	Parent=Os01t0660300-01
Chr01	irgsp1_rep	CDS	26888763	26888870	.	-	0	Parent=Os01t0660300-01
Chr01	irgsp1_rep	three_prime_UTR	26888425	26888762	.	-	.	Parent=Os01t0660300-01
Chr01	irgsp1_rep	mRNA	26905578	26907242	.	-	.	ID=Os01t0660400-01;Name=Os01t0660400-01;Locus_id=Os01g0660400;Note=Hypothetical gene.;Transcript_evidence=AK109270 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-188-A06;Expression=AK109270;TENOR=Os01t0660400-01;KEGG=Os01t0660400-01
Chr01	irgsp1_rep	five_prime_UTR	26907241	26907242	.	-	.	Parent=Os01t0660400-01
Chr01	irgsp1_rep	CDS	26907013	26907240	.	-	0	Parent=Os01t0660400-01
Chr01	irgsp1_rep	three_prime_UTR	26906977	26907012	.	-	.	Parent=Os01t0660400-01
Chr01	irgsp1_rep	three_prime_UTR	26905578	26905847	.	-	.	Parent=Os01t0660400-01
Chr01	irgsp1_rep	mRNA	26912591	26913295	.	+	.	ID=Os01t0660450-00;Name=Os01t0660450-00;Locus_id=Os01g0660450;Note=Similar to 3-5 exonuclease family protein.;Transcript_evidence=BT019050 (DDBJ);ORF_evidence=B6TC91 (UniProt);TENOR=Os01t0660450-00
Chr01	irgsp1_rep	CDS	26912591	26913295	.	+	0	Parent=Os01t0660450-00
Chr01	irgsp1_rep	mRNA	26912597	26913772	.	-	.	ID=Os01t0660500-00;Name=Os01t0660500-00;Locus_id=Os01g0660500;Oryzabase Gene Symbol Synonym(s)=OsSTA26;Note=Similar to 3-5 exonuclease family protein.;Transcript_evidence=FP099855 (DDBJ);ORF_evidence=B6TC91 (UniProt);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: 3'-5' exonuclease activity (GO:0008408);InterPro=3'-5' exonuclease (IPR002562),Ribonuclease H-like (IPR012337);Oryzabase=19335;TENOR=Os01t0660500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	26912597	26913772	.	-	0	Parent=Os01t0660500-00
Chr01	irgsp1_rep	mRNA	26913460	26919559	.	+	.	ID=Os01t0660550-01;Name=Os01t0660550-01;Locus_id=Os01g0660550;Note=Conserved hypothetical protein.;Transcript_evidence=AK242175 (DDBJ%2C Best hit);ORF_evidence=NP_001055948.1 (RefSeq);NIAS_FLcDNA=J075158L13;TENOR=Os01t0660550-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	26913460	26913832	.	+	.	Parent=Os01t0660550-01
Chr01	irgsp1_rep	five_prime_UTR	26913964	26914084	.	+	.	Parent=Os01t0660550-01
Chr01	irgsp1_rep	CDS	26914085	26914085	.	+	0	Parent=Os01t0660550-01
Chr01	irgsp1_rep	CDS	26918586	26918679	.	+	2	Parent=Os01t0660550-01
Chr01	irgsp1_rep	CDS	26918904	26919300	.	+	1	Parent=Os01t0660550-01
Chr01	irgsp1_rep	three_prime_UTR	26919301	26919559	.	+	.	Parent=Os01t0660550-01
Chr01	irgsp1_rep	mRNA	26923017	26924486	.	-	.	ID=Os01t0660700-01;Name=Os01t0660700-01;Locus_id=Os01g0660700;Oryzabase Gene Symbol Synonym(s)=Os_F0640;Note=Protein of unknown function DUF295 family protein.;Transcript_evidence=AK064155 (DDBJ%2C Best hit);ORF_evidence=A2WTF8 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174);NIAS_FLcDNA=002-103-F03;Oryzabase=17474;Expression=AK064155;TENOR=Os01t0660700-01;KEGG=Os01t0660700-01
Chr01	irgsp1_rep	five_prime_UTR	26924462	26924486	.	-	.	Parent=Os01t0660700-01
Chr01	irgsp1_rep	CDS	26923232	26924461	.	-	0	Parent=Os01t0660700-01
Chr01	irgsp1_rep	three_prime_UTR	26923017	26923231	.	-	.	Parent=Os01t0660700-01
Chr01	irgsp1_rep	mRNA	26967895	26968891	.	-	.	ID=Os01t0660800-01;Name=Os01t0660800-01;Locus_id=Os01g0660800;Note=3'-5' exonuclease domain containing protein.;Transcript_evidence=AK242290 (DDBJ%2C Best hit);ORF_evidence=B6TKY2 (UniProt);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: 3'-5' exonuclease activity (GO:0008408);InterPro=3'-5' exonuclease (IPR002562),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J075191E07;TENOR=Os01t0660800-01;KEGG=Os01t0660800-01 (EC:3.6.1.-)
Chr01	irgsp1_rep	five_prime_UTR	26968815	26968891	.	-	.	Parent=Os01t0660800-01
Chr01	irgsp1_rep	CDS	26968215	26968814	.	-	0	Parent=Os01t0660800-01
Chr01	irgsp1_rep	three_prime_UTR	26967895	26968214	.	-	.	Parent=Os01t0660800-01
Chr01	irgsp1_rep	mRNA	26968815	26971428	.	+	.	ID=Os01t0660850-01;Name=Os01t0660850-01;Locus_id=Os01g0660850;Note=Non-protein coding transcript.;Transcript_evidence=AK289062 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090093M24;TENOR=Os01t0660850-01
Chr01	irgsp1_rep	exon	26968815	26971428	.	+	.	Parent=Os01t0660850-01
Chr01	irgsp1_rep	mRNA	26971446	26973519	.	+	.	ID=Os01t0660900-00;Name=Os01t0660900-00;Locus_id=Os01g0660900;Note=Similar to phosphoglycerate mutase family protein.;Transcript_evidence=AK330283 (DDBJ);ORF_evidence=B6TTB7 (UniProt);InterPro=Histidine phosphatase superfamily%2C clade-1 (IPR013078);TENOR=Os01t0660900-00;KEGG=Os01t0660900-00
Chr01	irgsp1_rep	five_prime_UTR	26971446	26971450	.	+	.	Parent=Os01t0660900-00
Chr01	irgsp1_rep	CDS	26971451	26971911	.	+	0	Parent=Os01t0660900-00
Chr01	irgsp1_rep	CDS	26972061	26972142	.	+	1	Parent=Os01t0660900-00
Chr01	irgsp1_rep	CDS	26972873	26973087	.	+	0	Parent=Os01t0660900-00
Chr01	irgsp1_rep	CDS	26973283	26973403	.	+	1	Parent=Os01t0660900-00
Chr01	irgsp1_rep	three_prime_UTR	26973404	26973519	.	+	.	Parent=Os01t0660900-00
Chr01	irgsp1_rep	mRNA	26975616	26978062	.	+	.	ID=Os01t0661000-01;Name=Os01t0661000-01;Locus_id=Os01g0661000;Note=Uncharacterised protein family UPF0497%2C trans-membrane plant domain containing protein.;Transcript_evidence=AK105412 (DDBJ%2C Best hit);ORF_evidence=B8A6W8 (UniProt);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);NIAS_FLcDNA=001-123-G08;Expression=AK105412;TENOR=Os01t0661000-01;KEGG=Os01t0661000-01
Chr01	irgsp1_rep	five_prime_UTR	26975616	26975752	.	+	.	Parent=Os01t0661000-01
Chr01	irgsp1_rep	CDS	26975753	26976642	.	+	0	Parent=Os01t0661000-01
Chr01	irgsp1_rep	CDS	26976738	26976870	.	+	1	Parent=Os01t0661000-01
Chr01	irgsp1_rep	CDS	26977617	26977811	.	+	0	Parent=Os01t0661000-01
Chr01	irgsp1_rep	three_prime_UTR	26977812	26978062	.	+	.	Parent=Os01t0661000-01
Chr01	irgsp1_rep	mRNA	26975672	26977876	.	+	.	ID=Os01t0661000-02;Name=Os01t0661000-02;Locus_id=Os01g0661000;Note=Uncharacterised protein family UPF0497%2C trans-membrane plant domain containing protein.;Transcript_evidence=AK101958 (DDBJ%2C Best hit);ORF_evidence=B8A6W8 (UniProt);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);NIAS_FLcDNA=J033075N15;Expression=AK101958;TENOR=Os01t0661000-02;KEGG=Os01t0661000-02
Chr01	irgsp1_rep	five_prime_UTR	26975672	26975752	.	+	.	Parent=Os01t0661000-02
Chr01	irgsp1_rep	CDS	26975753	26976642	.	+	0	Parent=Os01t0661000-02
Chr01	irgsp1_rep	CDS	26976738	26976870	.	+	1	Parent=Os01t0661000-02
Chr01	irgsp1_rep	CDS	26977617	26977811	.	+	0	Parent=Os01t0661000-02
Chr01	irgsp1_rep	three_prime_UTR	26977812	26977876	.	+	.	Parent=Os01t0661000-02
Chr01	irgsp1_rep	mRNA	26976082	26976321	.	-	.	ID=Os01t0661200-00;Name=Os01t0661200-00;Locus_id=Os01g0661200;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os01t0661200-00
Chr01	irgsp1_rep	CDS	26976082	26976321	.	-	0	Parent=Os01t0661200-00
Chr01	irgsp1_rep	mRNA	27004281	27008038	.	+	.	ID=Os01t0661400-01;Name=Os01t0661400-01;Locus_id=Os01g0661400;Note=S1%2C RNA binding domain containing protein.;Transcript_evidence=AK073113 (DDBJ%2C Best hit);ORF_evidence=B6TDY7 (UniProt);InterPro=RNA-binding domain%2C S1 (IPR022967);NIAS_FLcDNA=J033022G03;Expression=AK073113;TENOR=Os01t0661400-01;KEGG=Os01t0661400-01
Chr01	irgsp1_rep	five_prime_UTR	27004281	27004382	.	+	.	Parent=Os01t0661400-01
Chr01	irgsp1_rep	CDS	27004383	27004430	.	+	0	Parent=Os01t0661400-01
Chr01	irgsp1_rep	CDS	27004525	27004599	.	+	0	Parent=Os01t0661400-01
Chr01	irgsp1_rep	CDS	27004708	27004794	.	+	0	Parent=Os01t0661400-01
Chr01	irgsp1_rep	CDS	27005308	27005364	.	+	0	Parent=Os01t0661400-01
Chr01	irgsp1_rep	CDS	27005609	27005701	.	+	0	Parent=Os01t0661400-01
Chr01	irgsp1_rep	CDS	27006270	27006342	.	+	0	Parent=Os01t0661400-01
Chr01	irgsp1_rep	CDS	27006572	27006647	.	+	2	Parent=Os01t0661400-01
Chr01	irgsp1_rep	CDS	27006723	27006813	.	+	1	Parent=Os01t0661400-01
Chr01	irgsp1_rep	CDS	27006901	27007020	.	+	0	Parent=Os01t0661400-01
Chr01	irgsp1_rep	three_prime_UTR	27007021	27007022	.	+	.	Parent=Os01t0661400-01
Chr01	irgsp1_rep	three_prime_UTR	27007693	27008038	.	+	.	Parent=Os01t0661400-01
Chr01	irgsp1_rep	mRNA	27008803	27012114	.	+	.	ID=Os01t0661500-01;Name=Os01t0661500-01;Locus_id=Os01g0661500;Note=Mov34/MPN/PAD-1 family protein.;Transcript_evidence=AK068127 (DDBJ%2C Best hit);ORF_evidence=Q6NKP9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Mov34/MPN/PAD-1 (IPR000555);NIAS_FLcDNA=J013132J05;Expression=AK068127;TENOR=Os01t0661500-01;KEGG=Os01t0661500-01 (EC:3.1.2.15)
Chr01	irgsp1_rep	five_prime_UTR	27008803	27008938	.	+	.	Parent=Os01t0661500-01
Chr01	irgsp1_rep	five_prime_UTR	27009484	27009508	.	+	.	Parent=Os01t0661500-01
Chr01	irgsp1_rep	CDS	27009509	27009524	.	+	0	Parent=Os01t0661500-01
Chr01	irgsp1_rep	CDS	27009599	27009918	.	+	2	Parent=Os01t0661500-01
Chr01	irgsp1_rep	CDS	27010021	27010110	.	+	0	Parent=Os01t0661500-01
Chr01	irgsp1_rep	CDS	27010221	27010283	.	+	0	Parent=Os01t0661500-01
Chr01	irgsp1_rep	CDS	27010420	27010494	.	+	0	Parent=Os01t0661500-01
Chr01	irgsp1_rep	CDS	27010664	27010726	.	+	0	Parent=Os01t0661500-01
Chr01	irgsp1_rep	CDS	27011456	27011505	.	+	0	Parent=Os01t0661500-01
Chr01	irgsp1_rep	CDS	27011624	27011810	.	+	1	Parent=Os01t0661500-01
Chr01	irgsp1_rep	three_prime_UTR	27011811	27012114	.	+	.	Parent=Os01t0661500-01
Chr01	irgsp1_rep	mRNA	27013833	27014965	.	+	.	ID=Os01t0661601-01;Name=Os01t0661601-01;Locus_id=Os01g0661601;Note=Hypothetical gene.;Transcript_evidence=AK241460 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065164F06;TENOR=Os01t0661601-01
Chr01	irgsp1_rep	five_prime_UTR	27013833	27014708	.	+	.	Parent=Os01t0661601-01
Chr01	irgsp1_rep	CDS	27014709	27014965	.	+	0	Parent=Os01t0661601-01
Chr01	irgsp1_rep	mRNA	27017521	27018815	.	-	.	ID=Os01t0661650-00;Name=Os01t0661650-00;Locus_id=Os01g0661650;Note=Hypothetical conserved gene.;Transcript_evidence=CT834939 (DDBJ%2C Best hit);ORF_evidence=NP_001172489.1 (RefSeq);TENOR=Os01t0661650-00;KEGG=Os01t0661650-00
Chr01	irgsp1_rep	five_prime_UTR	27018579	27018815	.	-	.	Parent=Os01t0661650-00
Chr01	irgsp1_rep	CDS	27018452	27018578	.	-	0	Parent=Os01t0661650-00
Chr01	irgsp1_rep	CDS	27017925	27018445	.	-	2	Parent=Os01t0661650-00
Chr01	irgsp1_rep	three_prime_UTR	27017521	27017924	.	-	.	Parent=Os01t0661650-00
Chr01	irgsp1_rep	mRNA	27019676	27021655	.	-	.	ID=Os01t0661700-01;Name=Os01t0661700-01;Locus_id=Os01g0661700;Note=Hypothetical gene.;Transcript_evidence=AK072040 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013105G22;Expression=AK072040;TENOR=Os01t0661700-01;KEGG=Os01t0661700-01
Chr01	irgsp1_rep	CDS	27021362	27021655	.	-	0	Parent=Os01t0661700-01
Chr01	irgsp1_rep	three_prime_UTR	27019676	27021361	.	-	.	Parent=Os01t0661700-01
Chr01	irgsp1_rep	mRNA	27032052	27032405	.	+	.	ID=Os01t0661750-00;Name=Os01t0661750-00;Locus_id=Os01g0661750;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001172490.1 (RefSeq);TENOR=Os01t0661750-00;KEGG=Os01t0661750-00
Chr01	irgsp1_rep	CDS	27032052	27032405	.	+	0	Parent=Os01t0661750-00
Chr01	irgsp1_rep	mRNA	27041773	27042644	.	+	.	ID=Os01t0662300-01;Name=Os01t0662300-01;Locus_id=Os01g0662300;CGSNL Gene Symbol=RPL12-2;CGSNL Gene Name=RIBOSOMAL PROTEIN L12-2;Oryzabase Gene Symbol Synonym(s)=rpl12-2%2C CL12%2C OsRPL12-2;Oryzabase Gene Name Synonym(s)=ribosomal protein L12-2%2C "50S ribosomal protein L12%2C chloroplastic"%2C chloroplast ribosomal protein L12;Note=Similar to Isoform 2 of 50S ribosomal protein L12%2C chloroplastic.;Transcript_evidence=AK062414 (DDBJ%2C Best hit);ORF_evidence=O22386-2 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L7/L12%2C C-terminal (IPR013823),Ribosomal protein L7/L12%2C C-terminal/adaptor protein ClpS-like (IPR014719);NIAS_FLcDNA=001-102-F05;Oryzabase=2282;Expression=AK062414;TENOR=Os01t0662300-01;KEGG=Os01t0662300-01
Chr01	irgsp1_rep	five_prime_UTR	27041773	27041874	.	+	.	Parent=Os01t0662300-01
Chr01	irgsp1_rep	CDS	27041875	27041894	.	+	0	Parent=Os01t0662300-01
Chr01	irgsp1_rep	CDS	27042297	27042432	.	+	1	Parent=Os01t0662300-01
Chr01	irgsp1_rep	three_prime_UTR	27042433	27042644	.	+	.	Parent=Os01t0662300-01
Chr01	irgsp1_rep	mRNA	27047598	27050478	.	-	.	ID=Os01t0662600-01;Name=Os01t0662600-01;Locus_id=Os01g0662600;RAP-DB Gene Symbol Synonym(s)=OsIsu1;CGSNL Gene Symbol=ISC6;CGSNL Gene Name=IRON-SULFUR CLUSTER PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsISC6;Oryzabase Gene Name Synonym(s)=Iron-sulfur cluster protein 6;Note=Scaffold protein for mitochondrial iron-sulfur-cluster biogenesis%2C Regulation of plant growth;Transcript_evidence=AK062234;ORF_evidence=Q8LR34;GO=Biological Process: iron-sulfur cluster assembly (GO:0016226),Molecular Function: iron ion binding (GO:0005506),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=ISC system FeS cluster assembly%2C IscU scaffold (IPR011339),NIF system FeS cluster assembly%2C NifU%2C N-terminal (IPR002871);NIAS_FLcDNA=001-047-D11;Manual Curation=November 5%2C 2020;Literature_PMID=19396402;Oryzabase=13421;Expression=AK062234;TENOR=Os01t0662600-01;KEGG=Os01t0662600-01;Subcellular location=mitochondrion (GO:0005739)
Chr01	irgsp1_rep	five_prime_UTR	27050376	27050478	.	-	.	Parent=Os01t0662600-01
Chr01	irgsp1_rep	CDS	27050063	27050375	.	-	0	Parent=Os01t0662600-01
Chr01	irgsp1_rep	CDS	27048681	27048735	.	-	2	Parent=Os01t0662600-01
Chr01	irgsp1_rep	CDS	27047812	27047959	.	-	1	Parent=Os01t0662600-01
Chr01	irgsp1_rep	three_prime_UTR	27047598	27047811	.	-	.	Parent=Os01t0662600-01
Chr01	irgsp1_rep	mRNA	27047492	27050427	.	-	.	ID=Os01t0662600-02;Name=Os01t0662600-02;Locus_id=Os01g0662600;CGSNL Gene Symbol=ISC6;CGSNL Gene Name=IRON-SULFUR CLUSTER PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsISC6;Oryzabase Gene Name Synonym(s)=Iron-sulfur cluster protein 6;Note=Similar to NifU-like protein.;Transcript_evidence=AK119723 (DDBJ%2C Best hit),AK098887 (DDBJ%2C Best hit);ORF_evidence=NP_001146933.1 (RefSeq);GO=Biological Process: iron-sulfur cluster assembly (GO:0016226),Molecular Function: iron ion binding (GO:0005506),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=NIF system FeS cluster assembly%2C NifU%2C N-terminal (IPR002871),ISC system FeS cluster assembly%2C IscU scaffold (IPR011339);NIAS_FLcDNA=002-157-G11,J013001K01;Oryzabase=13421;Expression=AK119723;TENOR=Os01t0662600-02;KEGG=Os01t0662600-02
Chr01	irgsp1_rep	five_prime_UTR	27050376	27050427	.	-	.	Parent=Os01t0662600-02
Chr01	irgsp1_rep	CDS	27050063	27050375	.	-	0	Parent=Os01t0662600-02
Chr01	irgsp1_rep	CDS	27048681	27048735	.	-	2	Parent=Os01t0662600-02
Chr01	irgsp1_rep	CDS	27047812	27047959	.	-	1	Parent=Os01t0662600-02
Chr01	irgsp1_rep	three_prime_UTR	27047492	27047811	.	-	.	Parent=Os01t0662600-02
Chr01	irgsp1_rep	mRNA	27047365	27050417	.	-	.	ID=Os01t0662600-04;Name=Os01t0662600-04;Locus_id=Os01g0662600;CGSNL Gene Symbol=ISC6;CGSNL Gene Name=IRON-SULFUR CLUSTER PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsISC6;Oryzabase Gene Name Synonym(s)=Iron-sulfur cluster protein 6;Note=Similar to nifU-like N-terminal domain-containing protein.;Transcript_evidence=AK099656 (DDBJ%2C Best hit);ORF_evidence=NP_001146933.1 (RefSeq);GO=Biological Process: iron-sulfur cluster assembly (GO:0016226),Molecular Function: iron ion binding (GO:0005506),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=NIF system FeS cluster assembly%2C NifU%2C N-terminal (IPR002871);NIAS_FLcDNA=J013066C15;Oryzabase=13421;Expression=AK099656;TENOR=Os01t0662600-04;KEGG=Os01t0662600-04
Chr01	irgsp1_rep	five_prime_UTR	27050376	27050417	.	-	.	Parent=Os01t0662600-04
Chr01	irgsp1_rep	CDS	27050004	27050375	.	-	0	Parent=Os01t0662600-04
Chr01	irgsp1_rep	three_prime_UTR	27047365	27050003	.	-	.	Parent=Os01t0662600-04
Chr01	irgsp1_rep	mRNA	27047552	27047903	.	-	.	ID=Os01t0662600-05;Name=Os01t0662600-05;Locus_id=Os01g0662600;CGSNL Gene Symbol=ISC6;CGSNL Gene Name=IRON-SULFUR CLUSTER PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsISC6;Oryzabase Gene Name Synonym(s)=Iron-sulfur cluster protein 6;Note=Non-protein coding transcript.;Transcript_evidence=AK105041 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-036-H01;Oryzabase=13421;TENOR=Os01t0662600-05;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	exon	27047552	27047903	.	-	.	Parent=Os01t0662600-05
Chr01	irgsp1_rep	mRNA	27050876	27054574	.	-	.	ID=Os01t0662700-01;Name=Os01t0662700-01;Locus_id=Os01g0662700;Note=Similar to Naphthoate synthase (EC 4.1.3.36).;Transcript_evidence=AK068152 (DDBJ%2C Best hit);ORF_evidence=E5GBI7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: menaquinone biosynthetic process (GO:0009234),Molecular Function: catalytic activity (GO:0003824),Molecular Function: 1%2C4-dihydroxy-2-naphthoyl-CoA synthase activity (GO:0008935);InterPro=Crotonase%2C core (IPR001753),Naphthoate synthase (IPR010198),Crontonase%2C C-terminal (IPR014748),Enoyl-CoA hydratase/isomerase%2C conserved site (IPR018376);NIAS_FLcDNA=J013129J09;Expression=AK068152;TENOR=Os01t0662700-01;KEGG=Os01t0662700-01 (EC:4.1.3.36)
Chr01	irgsp1_rep	five_prime_UTR	27054526	27054574	.	-	.	Parent=Os01t0662700-01
Chr01	irgsp1_rep	CDS	27054277	27054525	.	-	0	Parent=Os01t0662700-01
Chr01	irgsp1_rep	CDS	27053967	27054089	.	-	0	Parent=Os01t0662700-01
Chr01	irgsp1_rep	CDS	27053774	27053875	.	-	0	Parent=Os01t0662700-01
Chr01	irgsp1_rep	CDS	27053296	27053334	.	-	0	Parent=Os01t0662700-01
Chr01	irgsp1_rep	CDS	27053102	27053200	.	-	0	Parent=Os01t0662700-01
Chr01	irgsp1_rep	CDS	27052065	27052112	.	-	0	Parent=Os01t0662700-01
Chr01	irgsp1_rep	CDS	27051808	27051903	.	-	0	Parent=Os01t0662700-01
Chr01	irgsp1_rep	CDS	27051584	27051706	.	-	0	Parent=Os01t0662700-01
Chr01	irgsp1_rep	CDS	27051295	27051411	.	-	0	Parent=Os01t0662700-01
Chr01	irgsp1_rep	three_prime_UTR	27050876	27051294	.	-	.	Parent=Os01t0662700-01
Chr01	irgsp1_rep	mRNA	27055948	27056849	.	-	.	ID=Os01t0662800-00;Name=Os01t0662800-00;Locus_id=Os01g0662800;CGSNL Gene Symbol=GATA9;CGSNL Gene Name=GATA TRANSCRIPTION FACTOR 9;Oryzabase Gene Symbol Synonym(s)=OsGATA9;Oryzabase Gene Name Synonym(s)=GATA transcription factor 9%2C GATA factor 9;Note=Zinc finger%2C NHR/GATA-type domain containing protein.;Transcript_evidence=GU722206 (DDBJ);ORF_evidence=NP_001172493.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Zinc finger%2C GATA-type (IPR000679),Zinc finger%2C NHR/GATA-type (IPR013088);Oryzabase=20494;TENOR=Os01t0662800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	27056421	27056849	.	-	0	Parent=Os01t0662800-00
Chr01	irgsp1_rep	CDS	27055960	27056259	.	-	0	Parent=Os01t0662800-00
Chr01	irgsp1_rep	three_prime_UTR	27055948	27055959	.	-	.	Parent=Os01t0662800-00
Chr01	irgsp1_rep	mRNA	27062505	27064276	.	-	.	ID=Os01t0663051-00;Name=Os01t0663051-00;Locus_id=Os01g0663051;Note=Similar to SANT/MYB protein.;Transcript_evidence=CT834958 (DDBJ%2C Best hit);ORF_evidence=NP_001148292.1 (RefSeq);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Myb%2C DNA-binding (IPR014778);TENOR=Os01t0663051-00;KEGG=Os01t0663051-00
Chr01	irgsp1_rep	five_prime_UTR	27064168	27064276	.	-	.	Parent=Os01t0663051-00
Chr01	irgsp1_rep	CDS	27063892	27064167	.	-	0	Parent=Os01t0663051-00
Chr01	irgsp1_rep	three_prime_UTR	27063889	27063891	.	-	.	Parent=Os01t0663051-00
Chr01	irgsp1_rep	three_prime_UTR	27062505	27062842	.	-	.	Parent=Os01t0663051-00
Chr01	irgsp1_rep	mRNA	27081819	27085661	.	+	.	ID=Os01t0663300-01;Name=Os01t0663300-01;Locus_id=Os01g0663300;Note=Similar to (1-4)-beta-mannan endohydrolase-like protein.;Transcript_evidence=AK071667 (DDBJ%2C Best hit);ORF_evidence=Q0JKM9-2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 5 (IPR001547),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 5%2C conserved site (IPR018087);NIAS_FLcDNA=J023105N15;Expression=AK071667;TENOR=Os01t0663300-01;KEGG=Os01t0663300-01
Chr01	irgsp1_rep	five_prime_UTR	27081819	27081920	.	+	.	Parent=Os01t0663300-01
Chr01	irgsp1_rep	CDS	27081921	27082271	.	+	0	Parent=Os01t0663300-01
Chr01	irgsp1_rep	CDS	27082591	27082785	.	+	0	Parent=Os01t0663300-01
Chr01	irgsp1_rep	CDS	27084447	27084778	.	+	0	Parent=Os01t0663300-01
Chr01	irgsp1_rep	CDS	27084899	27084964	.	+	1	Parent=Os01t0663300-01
Chr01	irgsp1_rep	CDS	27085052	27085319	.	+	1	Parent=Os01t0663300-01
Chr01	irgsp1_rep	three_prime_UTR	27085320	27085661	.	+	.	Parent=Os01t0663300-01
Chr01	irgsp1_rep	mRNA	27085827	27092237	.	-	.	ID=Os01t0663400-01;Name=Os01t0663400-01;Locus_id=Os01g0663400;Oryzabase Gene Symbol Synonym(s)=OsAP10%2C AP10;Oryzabase Gene Name Synonym(s)=Aspartic proteinase oryzasin-1;Note=Similar to Aspartic proteinase oryzasin 1 precursor (EC 3.4.23.-).;Transcript_evidence=AK072283 (DDBJ%2C Best hit);ORF_evidence=NP_001148782.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Biological Process: lipid metabolic process (GO:0006629),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Saposin-like type B%2C 1 (IPR007856),Saposin-like type B%2C 2 (IPR008138),Saposin B (IPR008139),Peptidase aspartic%2C catalytic (IPR009007),Saposin-like (IPR011001),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J023016B15;Oryzabase=21720;Expression=AK072283;TENOR=Os01t0663400-01;KEGG=Os01t0663400-01 (EC:3.4.23.40)
Chr01	irgsp1_rep	five_prime_UTR	27092137	27092237	.	-	.	Parent=Os01t0663400-01
Chr01	irgsp1_rep	five_prime_UTR	27091816	27091829	.	-	.	Parent=Os01t0663400-01
Chr01	irgsp1_rep	CDS	27091420	27091815	.	-	0	Parent=Os01t0663400-01
Chr01	irgsp1_rep	CDS	27091256	27091316	.	-	0	Parent=Os01t0663400-01
Chr01	irgsp1_rep	CDS	27089885	27089979	.	-	2	Parent=Os01t0663400-01
Chr01	irgsp1_rep	CDS	27089682	27089794	.	-	0	Parent=Os01t0663400-01
Chr01	irgsp1_rep	CDS	27089180	27089348	.	-	1	Parent=Os01t0663400-01
Chr01	irgsp1_rep	CDS	27089046	27089085	.	-	0	Parent=Os01t0663400-01
Chr01	irgsp1_rep	CDS	27088856	27088920	.	-	2	Parent=Os01t0663400-01
Chr01	irgsp1_rep	CDS	27088065	27088178	.	-	0	Parent=Os01t0663400-01
Chr01	irgsp1_rep	CDS	27087909	27087973	.	-	0	Parent=Os01t0663400-01
Chr01	irgsp1_rep	CDS	27087480	27087636	.	-	1	Parent=Os01t0663400-01
Chr01	irgsp1_rep	CDS	27087282	27087401	.	-	0	Parent=Os01t0663400-01
Chr01	irgsp1_rep	CDS	27086404	27086492	.	-	0	Parent=Os01t0663400-01
Chr01	irgsp1_rep	CDS	27086004	27086088	.	-	1	Parent=Os01t0663400-01
Chr01	irgsp1_rep	three_prime_UTR	27085827	27086003	.	-	.	Parent=Os01t0663400-01
Chr01	irgsp1_rep	mRNA	27085767	27091585	.	-	.	ID=Os01t0663400-02;Name=Os01t0663400-02;Locus_id=Os01g0663400;Oryzabase Gene Symbol Synonym(s)=OsAP10%2C AP10;Oryzabase Gene Name Synonym(s)=Aspartic proteinase oryzasin-1;Note=Similar to aspartic proteinase oryzasin-1.;Transcript_evidence=AK072645 (DDBJ%2C Best hit);ORF_evidence=NP_001148782.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Biological Process: lipid metabolic process (GO:0006629),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Saposin-like type B%2C 1 (IPR007856),Saposin-like type B%2C 2 (IPR008138),Saposin B (IPR008139),Peptidase aspartic%2C catalytic (IPR009007),Saposin-like (IPR011001),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J023131B07;Oryzabase=21720;Expression=AK072645;TENOR=Os01t0663400-02;KEGG=Os01t0663400-02 (EC:3.4.23.40)
Chr01	irgsp1_rep	five_prime_UTR	27091585	27091585	.	-	.	Parent=Os01t0663400-02
Chr01	irgsp1_rep	CDS	27091420	27091584	.	-	0	Parent=Os01t0663400-02
Chr01	irgsp1_rep	CDS	27091256	27091316	.	-	0	Parent=Os01t0663400-02
Chr01	irgsp1_rep	CDS	27089885	27089979	.	-	2	Parent=Os01t0663400-02
Chr01	irgsp1_rep	CDS	27089682	27089794	.	-	0	Parent=Os01t0663400-02
Chr01	irgsp1_rep	CDS	27089180	27089348	.	-	1	Parent=Os01t0663400-02
Chr01	irgsp1_rep	CDS	27089046	27089085	.	-	0	Parent=Os01t0663400-02
Chr01	irgsp1_rep	CDS	27088856	27088920	.	-	2	Parent=Os01t0663400-02
Chr01	irgsp1_rep	CDS	27088065	27088178	.	-	0	Parent=Os01t0663400-02
Chr01	irgsp1_rep	CDS	27087909	27087973	.	-	0	Parent=Os01t0663400-02
Chr01	irgsp1_rep	CDS	27087480	27087636	.	-	1	Parent=Os01t0663400-02
Chr01	irgsp1_rep	CDS	27087282	27087401	.	-	0	Parent=Os01t0663400-02
Chr01	irgsp1_rep	CDS	27086404	27086492	.	-	0	Parent=Os01t0663400-02
Chr01	irgsp1_rep	CDS	27086004	27086088	.	-	1	Parent=Os01t0663400-02
Chr01	irgsp1_rep	three_prime_UTR	27085767	27086003	.	-	.	Parent=Os01t0663400-02
Chr01	irgsp1_rep	mRNA	27095458	27100193	.	+	.	ID=Os01t0663500-01;Name=Os01t0663500-01;Locus_id=Os01g0663500;Note=Transcriptional coactivator/pterin dehydratase family protein.;Transcript_evidence=AK058452 (DDBJ%2C Best hit),AK060072 (DDBJ%2C Best hit);ORF_evidence=NP_001148979.1 (RefSeq);GO=Biological Process: tetrahydrobiopterin biosynthetic process (GO:0006729),Molecular Function: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity (GO:0008124);InterPro=Transcriptional coactivator/pterin dehydratase (IPR001533);NIAS_FLcDNA=001-015-H04,006-306-A12;Expression=AK058452;TENOR=Os01t0663500-01;KEGG=Os01t0663500-01
Chr01	irgsp1_rep	five_prime_UTR	27095458	27095572	.	+	.	Parent=Os01t0663500-01
Chr01	irgsp1_rep	CDS	27095573	27095626	.	+	0	Parent=Os01t0663500-01
Chr01	irgsp1_rep	CDS	27095745	27095806	.	+	0	Parent=Os01t0663500-01
Chr01	irgsp1_rep	CDS	27096667	27096749	.	+	1	Parent=Os01t0663500-01
Chr01	irgsp1_rep	CDS	27098207	27098292	.	+	2	Parent=Os01t0663500-01
Chr01	irgsp1_rep	CDS	27098371	27098494	.	+	0	Parent=Os01t0663500-01
Chr01	irgsp1_rep	CDS	27099120	27099188	.	+	2	Parent=Os01t0663500-01
Chr01	irgsp1_rep	CDS	27099939	27100033	.	+	2	Parent=Os01t0663500-01
Chr01	irgsp1_rep	three_prime_UTR	27100034	27100193	.	+	.	Parent=Os01t0663500-01
Chr01	irgsp1_rep	mRNA	27102158	27110014	.	-	.	ID=Os01t0663800-01;Name=Os01t0663800-01;Locus_id=Os01g0663800;Oryzabase Gene Name Synonym(s)=Finger zinc testis metal-binding protein;Note=Protein of unknown function DUF1296 family protein.;Transcript_evidence=AK102816 (DDBJ%2C Best hit);ORF_evidence=B8A764 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=UBA-like (IPR009060),Protein of unknown function DUF1296 (IPR009719);NIAS_FLcDNA=J033108M16;Oryzabase=15993;Expression=AK102816;TENOR=Os01t0663800-01;KEGG=Os01t0663800-01
Chr01	irgsp1_rep	five_prime_UTR	27109811	27110014	.	-	.	Parent=Os01t0663800-01
Chr01	irgsp1_rep	CDS	27109612	27109810	.	-	0	Parent=Os01t0663800-01
Chr01	irgsp1_rep	CDS	27108581	27108624	.	-	2	Parent=Os01t0663800-01
Chr01	irgsp1_rep	CDS	27108231	27108354	.	-	0	Parent=Os01t0663800-01
Chr01	irgsp1_rep	CDS	27108076	27108154	.	-	2	Parent=Os01t0663800-01
Chr01	irgsp1_rep	CDS	27107339	27107982	.	-	1	Parent=Os01t0663800-01
Chr01	irgsp1_rep	CDS	27104737	27105016	.	-	2	Parent=Os01t0663800-01
Chr01	irgsp1_rep	CDS	27104398	27104662	.	-	1	Parent=Os01t0663800-01
Chr01	irgsp1_rep	CDS	27103725	27103874	.	-	0	Parent=Os01t0663800-01
Chr01	irgsp1_rep	CDS	27102906	27103394	.	-	0	Parent=Os01t0663800-01
Chr01	irgsp1_rep	CDS	27102469	27102750	.	-	0	Parent=Os01t0663800-01
Chr01	irgsp1_rep	three_prime_UTR	27102158	27102468	.	-	.	Parent=Os01t0663800-01
Chr01	irgsp1_rep	mRNA	27102188	27104665	.	-	.	ID=Os01t0663800-02;Name=Os01t0663800-02;Locus_id=Os01g0663800;Oryzabase Gene Name Synonym(s)=Finger zinc testis metal-binding protein;Note=Hypothetical conserved gene.;Transcript_evidence=AK062567 (DDBJ%2C Best hit);ORF_evidence=B8A764 (UniProt);NIAS_FLcDNA=001-045-H10;Oryzabase=15993;Expression=AK062567;TENOR=Os01t0663800-02;KEGG=Os01t0663800-02
Chr01	irgsp1_rep	five_prime_UTR	27104665	27104665	.	-	.	Parent=Os01t0663800-02
Chr01	irgsp1_rep	CDS	27104398	27104664	.	-	0	Parent=Os01t0663800-02
Chr01	irgsp1_rep	CDS	27103725	27103874	.	-	0	Parent=Os01t0663800-02
Chr01	irgsp1_rep	CDS	27102906	27103394	.	-	0	Parent=Os01t0663800-02
Chr01	irgsp1_rep	CDS	27102469	27102750	.	-	0	Parent=Os01t0663800-02
Chr01	irgsp1_rep	three_prime_UTR	27102188	27102468	.	-	.	Parent=Os01t0663800-02
Chr01	irgsp1_rep	mRNA	27115631	27120123	.	+	.	ID=Os01t0664000-00;Name=Os01t0664000-00;Locus_id=Os01g0664000;Oryzabase Gene Symbol Synonym(s)=OsCttP1%2C CTTP1;Oryzabase Gene Name Synonym(s)=C-terminal processing peptidase 1%2C C-TERMINAL PROCESSING PEPTIDASE 1;Note=Similar to carboxyl-terminal-processing protease.;Transcript_evidence=EU954703 (DDBJ);ORF_evidence=NP_001147330.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: protein binding (GO:0005515),Molecular Function: serine-type peptidase activity (GO:0008236);InterPro=PDZ/DHR/GLGF (IPR001478),Peptidase S41A%2C C-terminal peptidase (IPR004447),Interphotoreceptor retinol-binding (IPR005151);Oryzabase=20054;TENOR=Os01t0664000-00;KEGG=Os01t0664000-00
Chr01	irgsp1_rep	five_prime_UTR	27115631	27115661	.	+	.	Parent=Os01t0664000-00
Chr01	irgsp1_rep	CDS	27115662	27116021	.	+	0	Parent=Os01t0664000-00
Chr01	irgsp1_rep	CDS	27116221	27116340	.	+	0	Parent=Os01t0664000-00
Chr01	irgsp1_rep	CDS	27117043	27117180	.	+	0	Parent=Os01t0664000-00
Chr01	irgsp1_rep	CDS	27117422	27117526	.	+	0	Parent=Os01t0664000-00
Chr01	irgsp1_rep	CDS	27117625	27117793	.	+	0	Parent=Os01t0664000-00
Chr01	irgsp1_rep	CDS	27118249	27118325	.	+	2	Parent=Os01t0664000-00
Chr01	irgsp1_rep	CDS	27118538	27118582	.	+	0	Parent=Os01t0664000-00
Chr01	irgsp1_rep	CDS	27119116	27119199	.	+	0	Parent=Os01t0664000-00
Chr01	irgsp1_rep	CDS	27119588	27119626	.	+	0	Parent=Os01t0664000-00
Chr01	irgsp1_rep	CDS	27119705	27119767	.	+	0	Parent=Os01t0664000-00
Chr01	irgsp1_rep	CDS	27119851	27119980	.	+	0	Parent=Os01t0664000-00
Chr01	irgsp1_rep	CDS	27120061	27120116	.	+	2	Parent=Os01t0664000-00
Chr01	irgsp1_rep	three_prime_UTR	27120117	27120123	.	+	.	Parent=Os01t0664000-00
Chr01	irgsp1_rep	mRNA	27123488	27129361	.	+	.	ID=Os01t0664100-01;Name=Os01t0664100-01;Locus_id=Os01g0664100;Note=Mg2+ transporter protein%2C CorA-like/Zinc transport protein ZntB domain containing protein.;Transcript_evidence=AK065234 (DDBJ%2C Best hit);ORF_evidence=B8A765 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: metal ion transmembrane transporter activity (GO:0046873);InterPro=Mg2+ transporter protein%2C CorA-like/Zinc transport protein ZntB (IPR002523);NIAS_FLcDNA=J013002H17;Expression=AK065234;TENOR=Os01t0664100-01;KEGG=Os01t0664100-01
Chr01	irgsp1_rep	five_prime_UTR	27123488	27123807	.	+	.	Parent=Os01t0664100-01
Chr01	irgsp1_rep	five_prime_UTR	27124668	27124680	.	+	.	Parent=Os01t0664100-01
Chr01	irgsp1_rep	CDS	27124681	27125361	.	+	0	Parent=Os01t0664100-01
Chr01	irgsp1_rep	CDS	27126524	27126712	.	+	0	Parent=Os01t0664100-01
Chr01	irgsp1_rep	CDS	27126810	27126901	.	+	0	Parent=Os01t0664100-01
Chr01	irgsp1_rep	CDS	27127868	27127927	.	+	1	Parent=Os01t0664100-01
Chr01	irgsp1_rep	CDS	27128065	27128134	.	+	1	Parent=Os01t0664100-01
Chr01	irgsp1_rep	CDS	27128421	27128624	.	+	0	Parent=Os01t0664100-01
Chr01	irgsp1_rep	CDS	27128700	27129080	.	+	0	Parent=Os01t0664100-01
Chr01	irgsp1_rep	three_prime_UTR	27129081	27129361	.	+	.	Parent=Os01t0664100-01
Chr01	irgsp1_rep	mRNA	27130544	27134194	.	-	.	ID=Os01t0664200-01;Name=Os01t0664200-01;Locus_id=Os01g0664200;Note=Similar to Ser Thr specific protein kinase-like protein.;Transcript_evidence=AK100061 (DDBJ%2C Best hit);ORF_evidence=Q1EPK4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013160C18;Expression=AK100061;TENOR=Os01t0664200-01;KEGG=Os01t0664200-01
Chr01	irgsp1_rep	five_prime_UTR	27133835	27134194	.	-	.	Parent=Os01t0664200-01
Chr01	irgsp1_rep	five_prime_UTR	27133214	27133328	.	-	.	Parent=Os01t0664200-01
Chr01	irgsp1_rep	CDS	27132561	27133213	.	-	0	Parent=Os01t0664200-01
Chr01	irgsp1_rep	CDS	27132384	27132488	.	-	1	Parent=Os01t0664200-01
Chr01	irgsp1_rep	CDS	27132010	27132129	.	-	1	Parent=Os01t0664200-01
Chr01	irgsp1_rep	CDS	27131715	27131885	.	-	1	Parent=Os01t0664200-01
Chr01	irgsp1_rep	CDS	27131488	27131617	.	-	1	Parent=Os01t0664200-01
Chr01	irgsp1_rep	CDS	27131196	27131405	.	-	0	Parent=Os01t0664200-01
Chr01	irgsp1_rep	CDS	27130988	27131077	.	-	0	Parent=Os01t0664200-01
Chr01	irgsp1_rep	three_prime_UTR	27130544	27130987	.	-	.	Parent=Os01t0664200-01
Chr01	irgsp1_rep	mRNA	27130541	27134081	.	-	.	ID=Os01t0664200-02;Name=Os01t0664200-02;Locus_id=Os01g0664200;Note=Similar to Ser Thr specific protein kinase-like protein.;Transcript_evidence=AK066072 (DDBJ%2C Best hit);ORF_evidence=Q1EPK4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013055G14;TENOR=Os01t0664200-02
Chr01	irgsp1_rep	five_prime_UTR	27133835	27134081	.	-	.	Parent=Os01t0664200-02
Chr01	irgsp1_rep	five_prime_UTR	27133214	27133328	.	-	.	Parent=Os01t0664200-02
Chr01	irgsp1_rep	CDS	27132561	27133213	.	-	0	Parent=Os01t0664200-02
Chr01	irgsp1_rep	CDS	27132384	27132488	.	-	1	Parent=Os01t0664200-02
Chr01	irgsp1_rep	CDS	27132010	27132129	.	-	1	Parent=Os01t0664200-02
Chr01	irgsp1_rep	CDS	27131715	27131885	.	-	1	Parent=Os01t0664200-02
Chr01	irgsp1_rep	CDS	27131488	27131617	.	-	1	Parent=Os01t0664200-02
Chr01	irgsp1_rep	CDS	27131196	27131405	.	-	0	Parent=Os01t0664200-02
Chr01	irgsp1_rep	CDS	27130988	27131077	.	-	0	Parent=Os01t0664200-02
Chr01	irgsp1_rep	three_prime_UTR	27130541	27130987	.	-	.	Parent=Os01t0664200-02
Chr01	irgsp1_rep	mRNA	27145068	27149001	.	+	.	ID=Os01t0664500-01;Name=Os01t0664500-01;Locus_id=Os01g0664500;Note=Lg106-like family protein.;Transcript_evidence=AK069846 (DDBJ%2C Best hit);ORF_evidence=B6SN23 (UniProt);InterPro=Endosulphine (IPR006760);NIAS_FLcDNA=J023034B10;Expression=AK069846;TENOR=Os01t0664500-01;KEGG=Os01t0664500-01
Chr01	irgsp1_rep	five_prime_UTR	27145068	27145215	.	+	.	Parent=Os01t0664500-01
Chr01	irgsp1_rep	five_prime_UTR	27146541	27146628	.	+	.	Parent=Os01t0664500-01
Chr01	irgsp1_rep	five_prime_UTR	27146870	27146881	.	+	.	Parent=Os01t0664500-01
Chr01	irgsp1_rep	CDS	27146882	27147007	.	+	0	Parent=Os01t0664500-01
Chr01	irgsp1_rep	CDS	27147611	27147673	.	+	0	Parent=Os01t0664500-01
Chr01	irgsp1_rep	CDS	27147812	27147859	.	+	0	Parent=Os01t0664500-01
Chr01	irgsp1_rep	CDS	27147966	27148022	.	+	0	Parent=Os01t0664500-01
Chr01	irgsp1_rep	CDS	27148472	27148529	.	+	0	Parent=Os01t0664500-01
Chr01	irgsp1_rep	CDS	27148623	27148699	.	+	2	Parent=Os01t0664500-01
Chr01	irgsp1_rep	three_prime_UTR	27148700	27149001	.	+	.	Parent=Os01t0664500-01
Chr01	irgsp1_rep	mRNA	27145078	27146942	.	+	.	ID=Os01t0664500-02;Name=Os01t0664500-02;Locus_id=Os01g0664500;Note=Non-protein coding transcript.;Transcript_evidence=AK071583 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023104C01;TENOR=Os01t0664500-02
Chr01	irgsp1_rep	exon	27145078	27146942	.	+	.	Parent=Os01t0664500-02
Chr01	irgsp1_rep	mRNA	27145090	27149003	.	+	.	ID=Os01t0664500-03;Name=Os01t0664500-03;Locus_id=Os01g0664500;Note=Lg106-like family protein.;Transcript_evidence=AK059427 (DDBJ%2C Best hit);ORF_evidence=B6SN23 (UniProt);InterPro=Endosulphine (IPR006760);NIAS_FLcDNA=001-027-E11;Expression=AK059427;TENOR=Os01t0664500-03;KEGG=Os01t0664500-03
Chr01	irgsp1_rep	five_prime_UTR	27145090	27145215	.	+	.	Parent=Os01t0664500-03
Chr01	irgsp1_rep	five_prime_UTR	27146870	27146881	.	+	.	Parent=Os01t0664500-03
Chr01	irgsp1_rep	CDS	27146882	27147007	.	+	0	Parent=Os01t0664500-03
Chr01	irgsp1_rep	CDS	27147611	27147673	.	+	0	Parent=Os01t0664500-03
Chr01	irgsp1_rep	CDS	27147812	27147859	.	+	0	Parent=Os01t0664500-03
Chr01	irgsp1_rep	CDS	27147966	27148022	.	+	0	Parent=Os01t0664500-03
Chr01	irgsp1_rep	CDS	27148472	27148529	.	+	0	Parent=Os01t0664500-03
Chr01	irgsp1_rep	CDS	27148623	27148699	.	+	2	Parent=Os01t0664500-03
Chr01	irgsp1_rep	three_prime_UTR	27148700	27149003	.	+	.	Parent=Os01t0664500-03
Chr01	irgsp1_rep	mRNA	27171290	27178237	.	+	.	ID=Os01t0665200-01;Name=Os01t0665200-01;Locus_id=Os01g0665200;Oryzabase Gene Symbol Synonym(s)=OsMPK20-4%2C MPK20-4%2C OsWJUMK%2C WJUMK%2C OsWJUMK1%2C WJUMK1%2C MAPK8%2C OsMPK8%2C MPK8;Oryzabase Gene Name Synonym(s)=MAP kinase 20-4%2C Wound- and JA-uninducible MAP kinase 1;Note=Similar to Blast and wounding induced mitogen-activated protein kinase.;Transcript_evidence=AK072082 (DDBJ%2C Best hit);ORF_evidence=Q5SN53 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: MAP kinase activity (GO:0004707),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),MAP kinase%2C conserved site (IPR003527),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013116M16;Oryzabase=10681;Expression=AK072082;TENOR=Os01t0665200-01;KEGG=Os01t0665200-01
Chr01	irgsp1_rep	five_prime_UTR	27171290	27171949	.	+	.	Parent=Os01t0665200-01
Chr01	irgsp1_rep	five_prime_UTR	27171971	27172064	.	+	.	Parent=Os01t0665200-01
Chr01	irgsp1_rep	CDS	27172065	27172115	.	+	0	Parent=Os01t0665200-01
Chr01	irgsp1_rep	CDS	27173401	27173809	.	+	0	Parent=Os01t0665200-01
Chr01	irgsp1_rep	CDS	27174408	27174535	.	+	2	Parent=Os01t0665200-01
Chr01	irgsp1_rep	CDS	27174647	27174706	.	+	0	Parent=Os01t0665200-01
Chr01	irgsp1_rep	CDS	27175868	27176017	.	+	0	Parent=Os01t0665200-01
Chr01	irgsp1_rep	CDS	27176100	27176255	.	+	0	Parent=Os01t0665200-01
Chr01	irgsp1_rep	CDS	27176385	27176596	.	+	0	Parent=Os01t0665200-01
Chr01	irgsp1_rep	CDS	27176725	27176826	.	+	1	Parent=Os01t0665200-01
Chr01	irgsp1_rep	CDS	27177093	27177172	.	+	1	Parent=Os01t0665200-01
Chr01	irgsp1_rep	CDS	27177257	27177681	.	+	2	Parent=Os01t0665200-01
Chr01	irgsp1_rep	three_prime_UTR	27177682	27178237	.	+	.	Parent=Os01t0665200-01
Chr01	irgsp1_rep	mRNA	27171711	27178190	.	+	.	ID=Os01t0665200-02;Name=Os01t0665200-02;Locus_id=Os01g0665200;Oryzabase Gene Symbol Synonym(s)=OsMPK20-4%2C MPK20-4%2C OsWJUMK%2C WJUMK%2C OsWJUMK1%2C WJUMK1%2C MAPK8%2C OsMPK8%2C MPK8;Oryzabase Gene Name Synonym(s)=MAP kinase 20-4%2C Wound- and JA-uninducible MAP kinase 1;Note=Similar to Mitogen activated protein kinase 20-4.;Transcript_evidence=AK065342 (DDBJ%2C Best hit);ORF_evidence=Q0PIU4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013000P12;Oryzabase=10681;Expression=AK065342;TENOR=Os01t0665200-02;KEGG=Os01t0665200-02 (EC:2.7.11.24)
Chr01	irgsp1_rep	five_prime_UTR	27171711	27172064	.	+	.	Parent=Os01t0665200-02
Chr01	irgsp1_rep	CDS	27172065	27172115	.	+	0	Parent=Os01t0665200-02
Chr01	irgsp1_rep	CDS	27173401	27173809	.	+	0	Parent=Os01t0665200-02
Chr01	irgsp1_rep	CDS	27174394	27174431	.	+	2	Parent=Os01t0665200-02
Chr01	irgsp1_rep	three_prime_UTR	27174432	27176017	.	+	.	Parent=Os01t0665200-02
Chr01	irgsp1_rep	three_prime_UTR	27176100	27176255	.	+	.	Parent=Os01t0665200-02
Chr01	irgsp1_rep	three_prime_UTR	27176385	27176596	.	+	.	Parent=Os01t0665200-02
Chr01	irgsp1_rep	three_prime_UTR	27176725	27177172	.	+	.	Parent=Os01t0665200-02
Chr01	irgsp1_rep	three_prime_UTR	27177257	27178190	.	+	.	Parent=Os01t0665200-02
Chr01	irgsp1_rep	mRNA	27176103	27178076	.	+	.	ID=Os01t0665200-03;Name=Os01t0665200-03;Locus_id=Os01g0665200;Oryzabase Gene Symbol Synonym(s)=OsMPK20-4%2C MPK20-4%2C OsWJUMK%2C WJUMK%2C OsWJUMK1%2C WJUMK1%2C MAPK8%2C OsMPK8%2C MPK8;Oryzabase Gene Name Synonym(s)=MAP kinase 20-4%2C Wound- and JA-uninducible MAP kinase 1;Note=Similar to Mitogen-activated protein kinase 8.;Transcript_evidence=AK061663 (DDBJ%2C Best hit);ORF_evidence=Q5SN53 (UniProt);GO=Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009);NIAS_FLcDNA=001-036-E10;Oryzabase=10681;TENOR=Os01t0665200-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	27176103	27176135	.	+	.	Parent=Os01t0665200-03
Chr01	irgsp1_rep	CDS	27176136	27176255	.	+	0	Parent=Os01t0665200-03
Chr01	irgsp1_rep	CDS	27176385	27176596	.	+	0	Parent=Os01t0665200-03
Chr01	irgsp1_rep	CDS	27176725	27176826	.	+	1	Parent=Os01t0665200-03
Chr01	irgsp1_rep	CDS	27177093	27177172	.	+	1	Parent=Os01t0665200-03
Chr01	irgsp1_rep	CDS	27177257	27177681	.	+	2	Parent=Os01t0665200-03
Chr01	irgsp1_rep	three_prime_UTR	27177682	27178076	.	+	.	Parent=Os01t0665200-03
Chr01	irgsp1_rep	mRNA	27173399	27176828	.	-	.	ID=Os01t0665250-00;Name=Os01t0665250-00;Locus_id=Os01g0665250;Note=Hypothetical protein.;Transcript_evidence=tplb0038m20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0665250-00
Chr01	irgsp1_rep	five_prime_UTR	27176707	27176828	.	-	.	Parent=Os01t0665250-00
Chr01	irgsp1_rep	five_prime_UTR	27176378	27176581	.	-	.	Parent=Os01t0665250-00
Chr01	irgsp1_rep	five_prime_UTR	27176095	27176244	.	-	.	Parent=Os01t0665250-00
Chr01	irgsp1_rep	five_prime_UTR	27175861	27176006	.	-	.	Parent=Os01t0665250-00
Chr01	irgsp1_rep	five_prime_UTR	27174646	27174701	.	-	.	Parent=Os01t0665250-00
Chr01	irgsp1_rep	five_prime_UTR	27174403	27174534	.	-	.	Parent=Os01t0665250-00
Chr01	irgsp1_rep	five_prime_UTR	27173727	27173806	.	-	.	Parent=Os01t0665250-00
Chr01	irgsp1_rep	CDS	27173481	27173726	.	-	0	Parent=Os01t0665250-00
Chr01	irgsp1_rep	three_prime_UTR	27173399	27173480	.	-	.	Parent=Os01t0665250-00
Chr01	irgsp1_rep	mRNA	27178707	27183840	.	-	.	ID=Os01t0665300-01;Name=Os01t0665300-01;Locus_id=Os01g0665300;Note=Similar to CTD-phosphatase-like protein.;Transcript_evidence=AK066990 (DDBJ%2C Best hit);ORF_evidence=Q6VEY3 (UniProt);NIAS_FLcDNA=J013093I20;Expression=AK066990;TENOR=Os01t0665300-01;KEGG=Os01t0665300-01
Chr01	irgsp1_rep	five_prime_UTR	27183547	27183840	.	-	.	Parent=Os01t0665300-01
Chr01	irgsp1_rep	five_prime_UTR	27182701	27182735	.	-	.	Parent=Os01t0665300-01
Chr01	irgsp1_rep	CDS	27182544	27182700	.	-	0	Parent=Os01t0665300-01
Chr01	irgsp1_rep	CDS	27182143	27182237	.	-	2	Parent=Os01t0665300-01
Chr01	irgsp1_rep	CDS	27181444	27181578	.	-	0	Parent=Os01t0665300-01
Chr01	irgsp1_rep	three_prime_UTR	27179725	27181443	.	-	.	Parent=Os01t0665300-01
Chr01	irgsp1_rep	three_prime_UTR	27178707	27179631	.	-	.	Parent=Os01t0665300-01
Chr01	irgsp1_rep	mRNA	27178705	27183822	.	-	.	ID=Os01t0665300-02;Name=Os01t0665300-02;Locus_id=Os01g0665300;Note=NLI interacting factor domain containing protein.;Transcript_evidence=AK071909 (DDBJ%2C Best hit);ORF_evidence=Q6VEY3 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: phosphatase activity (GO:0016791);InterPro=NLI interacting factor (IPR004274),Dullard phosphatase domain%2C eukaryotic (IPR011948),HAD-like domain (IPR023214);NIAS_FLcDNA=J013065H16;Expression=AK071909;TENOR=Os01t0665300-02;KEGG=Os01t0665300-02
Chr01	irgsp1_rep	five_prime_UTR	27183547	27183822	.	-	.	Parent=Os01t0665300-02
Chr01	irgsp1_rep	five_prime_UTR	27182701	27182735	.	-	.	Parent=Os01t0665300-02
Chr01	irgsp1_rep	CDS	27182544	27182700	.	-	0	Parent=Os01t0665300-02
Chr01	irgsp1_rep	CDS	27182143	27182237	.	-	2	Parent=Os01t0665300-02
Chr01	irgsp1_rep	CDS	27181473	27181578	.	-	0	Parent=Os01t0665300-02
Chr01	irgsp1_rep	CDS	27179725	27180168	.	-	2	Parent=Os01t0665300-02
Chr01	irgsp1_rep	CDS	27179294	27179631	.	-	2	Parent=Os01t0665300-02
Chr01	irgsp1_rep	CDS	27178924	27179103	.	-	0	Parent=Os01t0665300-02
Chr01	irgsp1_rep	three_prime_UTR	27178705	27178923	.	-	.	Parent=Os01t0665300-02
Chr01	irgsp1_rep	mRNA	27185635	27191227	.	+	.	ID=Os01t0665400-01;Name=Os01t0665400-01;Locus_id=Os01g0665400;Note=Ribokinase family protein.;Transcript_evidence=AK065097 (DDBJ%2C Best hit);ORF_evidence=NP_001149557.1 (RefSeq);GO=Biological Process: D-ribose metabolic process (GO:0006014),Molecular Function: ribokinase activity (GO:0004747),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Ribokinase (IPR002139),Carbohydrate/puine kinase%2C PfkB%2C conserved site (IPR002173),Carbohydrate/purine kinase (IPR011611);NIAS_FLcDNA=J013001M16;Expression=AK065097;TENOR=Os01t0665400-01;KEGG=Os01t0665400-01 (EC:2.7.1.15)
Chr01	irgsp1_rep	five_prime_UTR	27185635	27185693	.	+	.	Parent=Os01t0665400-01
Chr01	irgsp1_rep	CDS	27185694	27186314	.	+	0	Parent=Os01t0665400-01
Chr01	irgsp1_rep	CDS	27188373	27188558	.	+	0	Parent=Os01t0665400-01
Chr01	irgsp1_rep	CDS	27190065	27190260	.	+	0	Parent=Os01t0665400-01
Chr01	irgsp1_rep	CDS	27190365	27190465	.	+	2	Parent=Os01t0665400-01
Chr01	irgsp1_rep	three_prime_UTR	27190466	27190515	.	+	.	Parent=Os01t0665400-01
Chr01	irgsp1_rep	three_prime_UTR	27190958	27191227	.	+	.	Parent=Os01t0665400-01
Chr01	irgsp1_rep	mRNA	27196814	27197158	.	-	.	ID=Os01t0665500-00;Name=Os01t0665500-00;Locus_id=Os01g0665500;CGSNL Gene Symbol=WRKY16;CGSNL Gene Name=WRKY GENE16;Oryzabase Gene Symbol Synonym(s)=OsWRKY16;Oryzabase Gene Name Synonym(s)=Rice WRKY gene16;Note=Similar to WRKY transcription factor 16.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7X7E3 (UniProt);Oryzabase=6527;TENOR=Os01t0665500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	27196814	27197158	.	-	0	Parent=Os01t0665500-00
Chr01	irgsp1_rep	mRNA	27198727	27199216	.	-	.	ID=Os01t0665750-01;Name=Os01t0665750-01;Locus_id=Os01g0665750;CGSNL Gene Symbol=WRKY16;CGSNL Gene Name=WRKY GENE16;Oryzabase Gene Symbol Synonym(s)=OsWRKY16;Oryzabase Gene Name Synonym(s)=Rice WRKY gene16;Note=Similar to WRKY transcription factor 16.;Transcript_evidence=AK111013 (DDBJ%2C Best hit);ORF_evidence=Q7X7E3 (UniProt);NIAS_FLcDNA=002-174-F12;Oryzabase=6527;Expression=AK111013;TENOR=Os01t0665750-01;KEGG=Os01t0665750-01
Chr01	irgsp1_rep	five_prime_UTR	27199216	27199216	.	-	.	Parent=Os01t0665750-01
Chr01	irgsp1_rep	CDS	27198727	27199215	.	-	0	Parent=Os01t0665750-01
Chr01	irgsp1_rep	mRNA	27220793	27221419	.	+	.	ID=Os01t0665900-00;Name=Os01t0665900-00;Locus_id=Os01g0665900;Note=Conserved hypothetical protein.;Transcript_evidence=FP091540 (DDBJ);ORF_evidence=NP_001172494.1 (RefSeq);TENOR=Os01t0665900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	27220793	27221338	.	+	0	Parent=Os01t0665900-00
Chr01	irgsp1_rep	three_prime_UTR	27221339	27221419	.	+	.	Parent=Os01t0665900-00
Chr01	irgsp1_rep	mRNA	27226175	27230292	.	-	.	ID=Os01t0666000-01;Name=Os01t0666000-01;Locus_id=Os01g0666000;Note=Similar to Lipid phosphate phosphatase 2 (EC 3.1.3.-) (AtLPP2) (Phosphatidic acid phosphatase 2) (AtPAP2) (Prenyl diphosphate phosphatase).;Transcript_evidence=AK070670 (DDBJ%2C Best hit);ORF_evidence=B6SSC1 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824);InterPro=Phosphatidic acid phosphatase type 2/haloperoxidase (IPR000326),Phosphatidic acid phosphatase/chloroperoxidase%2C N-terminal (IPR016118);NIAS_FLcDNA=J023057H08;Expression=AK070670;TENOR=Os01t0666000-01;KEGG=Os01t0666000-01
Chr01	irgsp1_rep	five_prime_UTR	27230022	27230292	.	-	.	Parent=Os01t0666000-01
Chr01	irgsp1_rep	CDS	27229788	27230021	.	-	0	Parent=Os01t0666000-01
Chr01	irgsp1_rep	CDS	27229591	27229678	.	-	0	Parent=Os01t0666000-01
Chr01	irgsp1_rep	CDS	27229389	27229498	.	-	2	Parent=Os01t0666000-01
Chr01	irgsp1_rep	CDS	27229166	27229259	.	-	0	Parent=Os01t0666000-01
Chr01	irgsp1_rep	CDS	27228751	27228939	.	-	2	Parent=Os01t0666000-01
Chr01	irgsp1_rep	CDS	27228566	27228625	.	-	2	Parent=Os01t0666000-01
Chr01	irgsp1_rep	CDS	27226560	27226672	.	-	2	Parent=Os01t0666000-01
Chr01	irgsp1_rep	three_prime_UTR	27226175	27226559	.	-	.	Parent=Os01t0666000-01
Chr01	irgsp1_rep	mRNA	27236103	27236288	.	-	.	ID=Os01t0666101-00;Name=Os01t0666101-00;Locus_id=Os01g0666101;Note=Similar to predicted protein.;Transcript_evidence=AK335557 (DDBJ);ORF_evidence=XP_001779700.1 (RefSeq);TENOR=Os01t0666101-00;KEGG=Os01t0666101-00
Chr01	irgsp1_rep	CDS	27236115	27236288	.	-	0	Parent=Os01t0666101-00
Chr01	irgsp1_rep	three_prime_UTR	27236103	27236114	.	-	.	Parent=Os01t0666101-00
Chr01	irgsp1_rep	mRNA	27236519	27239874	.	+	.	ID=Os01t0666200-01;Name=Os01t0666200-01;Locus_id=Os01g0666200;Note=High mobility group%2C HMG1/HMG2 domain containing protein.;Transcript_evidence=AK064663 (DDBJ%2C Best hit);ORF_evidence=NP_001151622.1 (RefSeq);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=High mobility group%2C HMG1/HMG2 (IPR000910),High mobility group%2C superfamily (IPR009071);NIAS_FLcDNA=002-115-A10;Expression=AK064663;TENOR=Os01t0666200-01;KEGG=Os01t0666200-01
Chr01	irgsp1_rep	five_prime_UTR	27236519	27236619	.	+	.	Parent=Os01t0666200-01
Chr01	irgsp1_rep	CDS	27236620	27236798	.	+	0	Parent=Os01t0666200-01
Chr01	irgsp1_rep	CDS	27237844	27237901	.	+	1	Parent=Os01t0666200-01
Chr01	irgsp1_rep	CDS	27237972	27238016	.	+	0	Parent=Os01t0666200-01
Chr01	irgsp1_rep	CDS	27239453	27239533	.	+	0	Parent=Os01t0666200-01
Chr01	irgsp1_rep	CDS	27239626	27239664	.	+	0	Parent=Os01t0666200-01
Chr01	irgsp1_rep	three_prime_UTR	27239665	27239874	.	+	.	Parent=Os01t0666200-01
Chr01	irgsp1_rep	mRNA	27240118	27241139	.	-	.	ID=Os01t0666400-01;Name=Os01t0666400-01;Locus_id=Os01g0666400;Note=Similar to predicted protein.;Transcript_evidence=AK288117 (DDBJ%2C Best hit);ORF_evidence=NP_001043800.1 (RefSeq);NIAS_FLcDNA=J080042M01;TENOR=Os01t0666400-01;KEGG=Os01t0666400-01
Chr01	irgsp1_rep	five_prime_UTR	27241138	27241139	.	-	.	Parent=Os01t0666400-01
Chr01	irgsp1_rep	CDS	27240295	27241137	.	-	0	Parent=Os01t0666400-01
Chr01	irgsp1_rep	three_prime_UTR	27240118	27240294	.	-	.	Parent=Os01t0666400-01
Chr01	irgsp1_rep	mRNA	27243443	27246045	.	-	.	ID=Os01t0666500-01;Name=Os01t0666500-01;Locus_id=Os01g0666500;Note=Similar to cytoChrome B561-related.;Transcript_evidence=AK102689 (DDBJ%2C Best hit);ORF_evidence=NP_193560.1 (RefSeq);NIAS_FLcDNA=J033102P10;Expression=AK102689;TENOR=Os01t0666500-01;KEGG=Os01t0666500-01
Chr01	irgsp1_rep	five_prime_UTR	27245961	27246045	.	-	.	Parent=Os01t0666500-01
Chr01	irgsp1_rep	CDS	27245590	27245960	.	-	0	Parent=Os01t0666500-01
Chr01	irgsp1_rep	CDS	27244455	27244766	.	-	1	Parent=Os01t0666500-01
Chr01	irgsp1_rep	CDS	27243661	27243841	.	-	1	Parent=Os01t0666500-01
Chr01	irgsp1_rep	three_prime_UTR	27243443	27243660	.	-	.	Parent=Os01t0666500-01
Chr01	irgsp1_rep	mRNA	27246279	27247948	.	+	.	ID=Os01t0666600-00;Name=Os01t0666600-00;Locus_id=Os01g0666600;Note=Conserved hypothetical protein.;Transcript_evidence=CT834942 (DDBJ%2C Best hit);ORF_evidence=NP_001043802.1 (RefSeq);TENOR=Os01t0666600-00;KEGG=Os01t0666600-00
Chr01	irgsp1_rep	five_prime_UTR	27246279	27246344	.	+	.	Parent=Os01t0666600-00
Chr01	irgsp1_rep	CDS	27246345	27246531	.	+	0	Parent=Os01t0666600-00
Chr01	irgsp1_rep	CDS	27247249	27247314	.	+	2	Parent=Os01t0666600-00
Chr01	irgsp1_rep	CDS	27247410	27247720	.	+	2	Parent=Os01t0666600-00
Chr01	irgsp1_rep	three_prime_UTR	27247721	27247948	.	+	.	Parent=Os01t0666600-00
Chr01	irgsp1_rep	mRNA	27257387	27266432	.	+	.	ID=Os01t0666800-01;Name=Os01t0666800-01;Locus_id=Os01g0666800;Note=Similar to predicted protein.;Transcript_evidence=AK242777 (DDBJ%2C Best hit);ORF_evidence=NP_565879.1 (RefSeq);GO=Biological Process: intracellular protein transport (GO:0006886),Cellular Component: cytoplasm (GO:0005737);InterPro=Vps16%2C C-terminal (IPR006925),Vps16%2C N-terminal (IPR006926),Six-bladed beta-propeller%2C TolB-like (IPR011042),Vacuolar protein sorting-associated protein 16 (IPR016534);NIAS_FLcDNA=J090054I20;TENOR=Os01t0666800-01;KEGG=Os01t0666800-01
Chr01	irgsp1_rep	five_prime_UTR	27257387	27257447	.	+	.	Parent=Os01t0666800-01
Chr01	irgsp1_rep	CDS	27257448	27258335	.	+	0	Parent=Os01t0666800-01
Chr01	irgsp1_rep	CDS	27258914	27259204	.	+	0	Parent=Os01t0666800-01
Chr01	irgsp1_rep	CDS	27259474	27259613	.	+	0	Parent=Os01t0666800-01
Chr01	irgsp1_rep	CDS	27261451	27261556	.	+	1	Parent=Os01t0666800-01
Chr01	irgsp1_rep	CDS	27261640	27261732	.	+	0	Parent=Os01t0666800-01
Chr01	irgsp1_rep	CDS	27262140	27262229	.	+	0	Parent=Os01t0666800-01
Chr01	irgsp1_rep	CDS	27262344	27262454	.	+	0	Parent=Os01t0666800-01
Chr01	irgsp1_rep	CDS	27263142	27263267	.	+	0	Parent=Os01t0666800-01
Chr01	irgsp1_rep	CDS	27263450	27263523	.	+	0	Parent=Os01t0666800-01
Chr01	irgsp1_rep	CDS	27263620	27263674	.	+	1	Parent=Os01t0666800-01
Chr01	irgsp1_rep	CDS	27263883	27264064	.	+	0	Parent=Os01t0666800-01
Chr01	irgsp1_rep	CDS	27264701	27264830	.	+	1	Parent=Os01t0666800-01
Chr01	irgsp1_rep	CDS	27264912	27265014	.	+	0	Parent=Os01t0666800-01
Chr01	irgsp1_rep	CDS	27265170	27265267	.	+	2	Parent=Os01t0666800-01
Chr01	irgsp1_rep	CDS	27265994	27266161	.	+	0	Parent=Os01t0666800-01
Chr01	irgsp1_rep	three_prime_UTR	27266162	27266432	.	+	.	Parent=Os01t0666800-01
Chr01	irgsp1_rep	mRNA	27266710	27266859	.	-	.	ID=Os01t0666900-00;Name=Os01t0666900-00;Locus_id=Os01g0666900;Note=Non-protein coding transcript.;Transcript_evidence=CT834937 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os01t0666900-00
Chr01	irgsp1_rep	exon	27266710	27266859	.	-	.	Parent=Os01t0666900-00
Chr01	irgsp1_rep	mRNA	27266745	27268261	.	+	.	ID=Os01t0666950-00;Name=Os01t0666950-00;Locus_id=Os01g0666950;Note=Hypothetical conserved gene.;Transcript_evidence=BT016634 (DDBJ);ORF_evidence=C4J224 (UniProt);TENOR=Os01t0666950-00;KEGG=Os01t0666950-00
Chr01	irgsp1_rep	CDS	27266745	27267203	.	+	0	Parent=Os01t0666950-00
Chr01	irgsp1_rep	three_prime_UTR	27267204	27267206	.	+	.	Parent=Os01t0666950-00
Chr01	irgsp1_rep	three_prime_UTR	27268102	27268261	.	+	.	Parent=Os01t0666950-00
Chr01	irgsp1_rep	mRNA	27269167	27270223	.	-	.	ID=Os01t0667000-00;Name=Os01t0667000-00;Locus_id=Os01g0667000;CGSNL Gene Symbol=NAC141;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 141;Oryzabase Gene Symbol Synonym(s)=ONAC141;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 141;Note=No apical meristem (NAM) protein domain containing protein.;Transcript_evidence=FP096727 (DDBJ);ORF_evidence=Q5QLQ4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);Oryzabase=15900;TENOR=Os01t0667000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	27270190	27270223	.	-	.	Parent=Os01t0667000-00
Chr01	irgsp1_rep	CDS	27269167	27270189	.	-	0	Parent=Os01t0667000-00
Chr01	irgsp1_rep	mRNA	27271350	27273931	.	-	.	ID=Os01t0667100-01;Name=Os01t0667100-01;Locus_id=Os01g0667100;Note=Similar to 60S ribosomal protein L18A.;Transcript_evidence=AK287948 (DDBJ%2C Best hit);ORF_evidence=NP_001148379.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L18a (IPR021138);NIAS_FLcDNA=J075028D01;TENOR=Os01t0667100-01;KEGG=Os01t0667100-01
Chr01	irgsp1_rep	five_prime_UTR	27273859	27273931	.	-	.	Parent=Os01t0667100-01
Chr01	irgsp1_rep	CDS	27273558	27273858	.	-	0	Parent=Os01t0667100-01
Chr01	irgsp1_rep	CDS	27272475	27272553	.	-	2	Parent=Os01t0667100-01
Chr01	irgsp1_rep	CDS	27272273	27272390	.	-	1	Parent=Os01t0667100-01
Chr01	irgsp1_rep	CDS	27271732	27271791	.	-	0	Parent=Os01t0667100-01
Chr01	irgsp1_rep	three_prime_UTR	27271350	27271731	.	-	.	Parent=Os01t0667100-01
Chr01	irgsp1_rep	mRNA	27274750	27278556	.	-	.	ID=Os01t0667200-01;Name=Os01t0667200-01;Locus_id=Os01g0667200;RAP-DB Gene Symbol Synonym(s)=GLYII-1%2C OsGLYII1%2C GLYII1%2C OsETHE1%2C ETHE1%2C OsGLYII-1;RAP-DB Gene Name Synonym(s)=GLYOXALASE II-1%2C glyoxalase II-1%2C ETHYLMALONIC ENCEPHALOPATHY PROTEIN 1%2C ETHE1-like protein%2C ethylmalonic encephalopathy-1;CGSNL Gene Symbol=GLYII-1;CGSNL Gene Name=GLYOXALASE II-1;Oryzabase Gene Symbol Synonym(s)=OsGLYII1%2C GLYII1%2C OsETHE1%2C ETHE1%2C OsGLYII-1;Oryzabase Gene Name Synonym(s)=glyoxalase II-1%2C ETHYLMALONIC ENCEPHALOPATHY PROTEIN 1%2C ETHE1-like protein%2C ethylmalonic encephalopathy-1;Note=Mitochondrial sulfur dioxygenase%2C Abiotic stress response;Transcript_evidence=AK067930;ORF_evidence=Q5QLQ5;InterPro=Metallo-beta-lactamase (IPR001279);NIAS_FLcDNA=J013127E08;Manual Curation=March 18%2C 2016;Literature_PMID=25482779,24410953;Oryzabase=9362;TENOR=Os01t0667200-01
Chr01	irgsp1_rep	five_prime_UTR	27278176	27278556	.	-	.	Parent=Os01t0667200-01
Chr01	irgsp1_rep	CDS	27277903	27278175	.	-	0	Parent=Os01t0667200-01
Chr01	irgsp1_rep	CDS	27277072	27277200	.	-	0	Parent=Os01t0667200-01
Chr01	irgsp1_rep	CDS	27276848	27276955	.	-	0	Parent=Os01t0667200-01
Chr01	irgsp1_rep	CDS	27275908	27276042	.	-	0	Parent=Os01t0667200-01
Chr01	irgsp1_rep	CDS	27275651	27275692	.	-	0	Parent=Os01t0667200-01
Chr01	irgsp1_rep	CDS	27275430	27275489	.	-	0	Parent=Os01t0667200-01
Chr01	irgsp1_rep	CDS	27275310	27275363	.	-	0	Parent=Os01t0667200-01
Chr01	irgsp1_rep	CDS	27275196	27275220	.	-	0	Parent=Os01t0667200-01
Chr01	irgsp1_rep	CDS	27274932	27275023	.	-	2	Parent=Os01t0667200-01
Chr01	irgsp1_rep	three_prime_UTR	27274750	27274931	.	-	.	Parent=Os01t0667200-01
Chr01	irgsp1_rep	mRNA	27274750	27278182	.	-	.	ID=Os01t0667200-02;Name=Os01t0667200-02;Locus_id=Os01g0667200;CGSNL Gene Symbol=GLYII-1;CGSNL Gene Name=GLYOXALASE II-1;Oryzabase Gene Symbol Synonym(s)=OsGLYII1%2C GLYII1%2C OsETHE1%2C ETHE1%2C OsGLYII-1;Oryzabase Gene Name Synonym(s)=glyoxalase II-1%2C ETHYLMALONIC ENCEPHALOPATHY PROTEIN 1%2C ETHE1-like protein%2C ethylmalonic encephalopathy-1;Note=Similar to Glyoxalase II.;Transcript_evidence=AK104104 (DDBJ%2C Best hit),AK104749 (DDBJ%2C Best hit);ORF_evidence=B9EYI3 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Beta-lactamase-like (IPR001279);NIAS_FLcDNA=006-202-B10,001-038-F04;Oryzabase=9362;TENOR=Os01t0667200-02
Chr01	irgsp1_rep	five_prime_UTR	27278176	27278182	.	-	.	Parent=Os01t0667200-02
Chr01	irgsp1_rep	CDS	27277903	27278175	.	-	0	Parent=Os01t0667200-02
Chr01	irgsp1_rep	CDS	27277072	27277200	.	-	0	Parent=Os01t0667200-02
Chr01	irgsp1_rep	CDS	27276848	27276955	.	-	0	Parent=Os01t0667200-02
Chr01	irgsp1_rep	CDS	27275908	27276042	.	-	0	Parent=Os01t0667200-02
Chr01	irgsp1_rep	CDS	27275651	27275692	.	-	0	Parent=Os01t0667200-02
Chr01	irgsp1_rep	CDS	27275430	27275489	.	-	0	Parent=Os01t0667200-02
Chr01	irgsp1_rep	CDS	27275310	27275363	.	-	0	Parent=Os01t0667200-02
Chr01	irgsp1_rep	CDS	27275196	27275220	.	-	0	Parent=Os01t0667200-02
Chr01	irgsp1_rep	CDS	27274932	27275023	.	-	2	Parent=Os01t0667200-02
Chr01	irgsp1_rep	three_prime_UTR	27274750	27274931	.	-	.	Parent=Os01t0667200-02
Chr01	irgsp1_rep	mRNA	27290270	27291807	.	-	.	ID=Os01t0667400-01;Name=Os01t0667400-01;Locus_id=Os01g0667400;CGSNL Gene Symbol=DWT1;CGSNL Gene Name=DWARF TILLER 1;Oryzabase Gene Symbol Synonym(s)=OsWOX7%2C Os WOX7%2C WOX7%2C OsWOX9A%2C DWT1/WOX9A%2C OsDWT1%2C WOX9A;Oryzabase Gene Name Synonym(s)=DWARF TILLER1%2C WUSCHEL-related homeobox 7%2C WUSCHEL-LIKE HOMEOBOX 7;Note=Similar to WUSCHEL-related homeobox 7.;Transcript_evidence=AK064236 (DDBJ%2C Best hit);ORF_evidence=Q0JKK6 (UniProt);NIAS_FLcDNA=002-104-H12;Oryzabase=13224;TENOR=Os01t0667400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	27291806	27291807	.	-	.	Parent=Os01t0667400-01
Chr01	irgsp1_rep	CDS	27290960	27291805	.	-	0	Parent=Os01t0667400-01
Chr01	irgsp1_rep	three_prime_UTR	27290270	27290959	.	-	.	Parent=Os01t0667400-01
Chr01	irgsp1_rep	mRNA	27288306	27292681	.	-	.	ID=Os01t0667400-02;Name=Os01t0667400-02;Locus_id=Os01g0667400;RAP-DB Gene Symbol Synonym(s)=DWT1%2C OsWOX7%2C Os WOX7%2C WOX7%2C OsWOX9A;RAP-DB Gene Name Synonym(s)=DWARF TILLER 1%2C DWARF TILLER1%2C WUSCHEL-related homeobox 7%2C WUSCHEL-LIKE HOMEOBOX 7;CGSNL Gene Symbol=DWT1;CGSNL Gene Name=DWARF TILLER 1;Oryzabase Gene Symbol Synonym(s)=OsWOX7%2C Os WOX7%2C WOX7%2C OsWOX9A%2C DWT1/WOX9A%2C OsDWT1%2C WOX9A;Oryzabase Gene Name Synonym(s)=DWARF TILLER1%2C WUSCHEL-related homeobox 7%2C WUSCHEL-LIKE HOMEOBOX 7;Note=WUSCHEL-related homeobox transcription factor%2C Tiller growth;Transcript_evidence=Inferred from literature;ORF_evidence=Q0JKK6;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeodomain-like (IPR009057),Homeobox domain (IPR001356);Manual Curation=April 14%2C 2014;Literature_PMID=24625559;Oryzabase=13224
Chr01	irgsp1_rep	five_prime_UTR	27292438	27292681	.	-	.	Parent=Os01t0667400-02
Chr01	irgsp1_rep	CDS	27292266	27292437	.	-	0	Parent=Os01t0667400-02
Chr01	irgsp1_rep	CDS	27290978	27292116	.	-	2	Parent=Os01t0667400-02
Chr01	irgsp1_rep	CDS	27288763	27289053	.	-	0	Parent=Os01t0667400-02
Chr01	irgsp1_rep	three_prime_UTR	27288306	27288762	.	-	.	Parent=Os01t0667400-02
Chr01	irgsp1_rep	mRNA	27301738	27302710	.	-	.	ID=Os01t0667550-00;Name=Os01t0667550-00;Locus_id=Os01g0667550;Note=Hypothetical gene.;Transcript_evidence=BT084300 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0667550-00;KEGG=Os01t0667550-00
Chr01	irgsp1_rep	five_prime_UTR	27302710	27302710	.	-	.	Parent=Os01t0667550-00
Chr01	irgsp1_rep	CDS	27302367	27302709	.	-	0	Parent=Os01t0667550-00
Chr01	irgsp1_rep	CDS	27301917	27301969	.	-	2	Parent=Os01t0667550-00
Chr01	irgsp1_rep	three_prime_UTR	27301738	27301916	.	-	.	Parent=Os01t0667550-00
Chr01	irgsp1_rep	mRNA	27301548	27302922	.	+	.	ID=Os01t0667600-01;Name=Os01t0667600-01;Locus_id=Os01g0667600;Oryzabase Gene Symbol Synonym(s)=OsRab11C1;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab11C1;Note=Similar to GTP-binding protein.;Transcript_evidence=AK111561 (DDBJ%2C Best hit);ORF_evidence=B6U632 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: intracellular protein transport (GO:0006886),Biological Process: nucleocytoplasmic transport (GO:0006913),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Cellular Component: membrane (GO:0016020),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Ran GTPase (IPR002041),Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C Ras type (IPR020849);NIAS_FLcDNA=J013063J15;Oryzabase=11099;Expression=AK111561;TENOR=Os01t0667600-01;KEGG=Os01t0667600-01
Chr01	irgsp1_rep	five_prime_UTR	27301548	27301714	.	+	.	Parent=Os01t0667600-01
Chr01	irgsp1_rep	CDS	27301715	27301953	.	+	0	Parent=Os01t0667600-01
Chr01	irgsp1_rep	CDS	27302352	27302787	.	+	1	Parent=Os01t0667600-01
Chr01	irgsp1_rep	three_prime_UTR	27302788	27302922	.	+	.	Parent=Os01t0667600-01
Chr01	irgsp1_rep	mRNA	27303264	27312300	.	-	.	ID=Os01t0667700-01;Name=Os01t0667700-01;Locus_id=Os01g0667700;Oryzabase Gene Symbol Synonym(s)=OsRFP%2C OsZFP1;Oryzabase Gene Name Synonym(s)=RING finger protein%2C E3 ligase OsZFP1;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK069287 (DDBJ%2C Best hit);ORF_evidence=B6SVN2 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J023010H14;Oryzabase=21148;TENOR=Os01t0667700-01
Chr01	irgsp1_rep	five_prime_UTR	27311918	27312300	.	-	.	Parent=Os01t0667700-01
Chr01	irgsp1_rep	five_prime_UTR	27307386	27307467	.	-	.	Parent=Os01t0667700-01
Chr01	irgsp1_rep	CDS	27306566	27307385	.	-	0	Parent=Os01t0667700-01
Chr01	irgsp1_rep	CDS	27306018	27306358	.	-	2	Parent=Os01t0667700-01
Chr01	irgsp1_rep	CDS	27304562	27304660	.	-	0	Parent=Os01t0667700-01
Chr01	irgsp1_rep	CDS	27304309	27304473	.	-	0	Parent=Os01t0667700-01
Chr01	irgsp1_rep	CDS	27303576	27303722	.	-	0	Parent=Os01t0667700-01
Chr01	irgsp1_rep	three_prime_UTR	27303264	27303575	.	-	.	Parent=Os01t0667700-01
Chr01	irgsp1_rep	mRNA	27303264	27312272	.	-	.	ID=Os01t0667700-02;Name=Os01t0667700-02;Locus_id=Os01g0667700;Oryzabase Gene Symbol Synonym(s)=OsRFP%2C OsZFP1;Oryzabase Gene Name Synonym(s)=RING finger protein%2C E3 ligase OsZFP1;Note=Similar to RING-finger protein like.;Transcript_evidence=AK067662 (DDBJ%2C Best hit);ORF_evidence=B6SVN2 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J013116G13;Oryzabase=21148;Expression=AK067662;TENOR=Os01t0667700-02;KEGG=Os01t0667700-02
Chr01	irgsp1_rep	five_prime_UTR	27311918	27312272	.	-	.	Parent=Os01t0667700-02
Chr01	irgsp1_rep	five_prime_UTR	27307386	27307467	.	-	.	Parent=Os01t0667700-02
Chr01	irgsp1_rep	CDS	27306566	27307385	.	-	0	Parent=Os01t0667700-02
Chr01	irgsp1_rep	CDS	27306018	27306361	.	-	2	Parent=Os01t0667700-02
Chr01	irgsp1_rep	CDS	27304562	27304660	.	-	0	Parent=Os01t0667700-02
Chr01	irgsp1_rep	CDS	27304309	27304473	.	-	0	Parent=Os01t0667700-02
Chr01	irgsp1_rep	CDS	27303576	27303722	.	-	0	Parent=Os01t0667700-02
Chr01	irgsp1_rep	three_prime_UTR	27303264	27303575	.	-	.	Parent=Os01t0667700-02
Chr01	irgsp1_rep	mRNA	27306588	27312183	.	-	.	ID=Os01t0667700-03;Name=Os01t0667700-03;Locus_id=Os01g0667700;Oryzabase Gene Symbol Synonym(s)=OsRFP%2C OsZFP1;Oryzabase Gene Name Synonym(s)=RING finger protein%2C E3 ligase OsZFP1;Note=Similar to RING-finger protein like.;Transcript_evidence=AK100344 (DDBJ%2C Best hit);ORF_evidence=B6SVN2 (UniProt);NIAS_FLcDNA=J023082F04;Oryzabase=21148;Expression=AK100344;TENOR=Os01t0667700-03;KEGG=Os01t0667700-03
Chr01	irgsp1_rep	five_prime_UTR	27311918	27312183	.	-	.	Parent=Os01t0667700-03
Chr01	irgsp1_rep	five_prime_UTR	27307386	27307467	.	-	.	Parent=Os01t0667700-03
Chr01	irgsp1_rep	CDS	27306588	27307385	.	-	0	Parent=Os01t0667700-03
Chr01	irgsp1_rep	mRNA	27303264	27312185	.	-	.	ID=Os01t0667700-04;Name=Os01t0667700-04;Locus_id=Os01g0667700;Oryzabase Gene Symbol Synonym(s)=OsRFP%2C OsZFP1;Oryzabase Gene Name Synonym(s)=RING finger protein%2C E3 ligase OsZFP1;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK069011 (DDBJ%2C Best hit);ORF_evidence=B6SVN2 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J023001G18;Oryzabase=21148;TENOR=Os01t0667700-04
Chr01	irgsp1_rep	five_prime_UTR	27311918	27312185	.	-	.	Parent=Os01t0667700-04
Chr01	irgsp1_rep	five_prime_UTR	27307386	27307467	.	-	.	Parent=Os01t0667700-04
Chr01	irgsp1_rep	CDS	27306566	27307385	.	-	0	Parent=Os01t0667700-04
Chr01	irgsp1_rep	CDS	27306018	27306358	.	-	2	Parent=Os01t0667700-04
Chr01	irgsp1_rep	CDS	27304562	27304660	.	-	0	Parent=Os01t0667700-04
Chr01	irgsp1_rep	CDS	27304309	27304473	.	-	0	Parent=Os01t0667700-04
Chr01	irgsp1_rep	CDS	27303576	27303722	.	-	0	Parent=Os01t0667700-04
Chr01	irgsp1_rep	three_prime_UTR	27303264	27303575	.	-	.	Parent=Os01t0667700-04
Chr01	irgsp1_rep	mRNA	27303408	27307393	.	+	.	ID=Os01t0667725-00;Name=Os01t0667725-00;Locus_id=Os01g0667725;Note=Non-protein coding transcript.;Transcript_evidence=tplb0029e12 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os01t0667725-00
Chr01	irgsp1_rep	exon	27303408	27303784	.	+	.	Parent=Os01t0667725-00
Chr01	irgsp1_rep	exon	27304391	27304472	.	+	.	Parent=Os01t0667725-00
Chr01	irgsp1_rep	exon	27304561	27304780	.	+	.	Parent=Os01t0667725-00
Chr01	irgsp1_rep	exon	27306023	27306333	.	+	.	Parent=Os01t0667725-00
Chr01	irgsp1_rep	exon	27306548	27306722	.	+	.	Parent=Os01t0667725-00
Chr01	irgsp1_rep	exon	27306776	27307393	.	+	.	Parent=Os01t0667725-00
Chr01	irgsp1_rep	mRNA	27312997	27314433	.	+	.	ID=Os01t0667750-01;Name=Os01t0667750-01;Locus_id=Os01g0667750;Note=Hypothetical gene.;Transcript_evidence=AK288717 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090062H13;TENOR=Os01t0667750-01;KEGG=Os01t0667750-01
Chr01	irgsp1_rep	five_prime_UTR	27312997	27314054	.	+	.	Parent=Os01t0667750-01
Chr01	irgsp1_rep	CDS	27314055	27314393	.	+	0	Parent=Os01t0667750-01
Chr01	irgsp1_rep	three_prime_UTR	27314394	27314433	.	+	.	Parent=Os01t0667750-01
Chr01	irgsp1_rep	mRNA	27317349	27320807	.	-	.	ID=Os01t0667800-01;Name=Os01t0667800-01;Locus_id=Os01g0667800;Note=Similar to U2 snRNP auxiliary factor%2C small subunit.;Transcript_evidence=AK241513 (DDBJ%2C Best hit);ORF_evidence=NP_001148499.1 (RefSeq);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA recognition motif domain (IPR000504),Zinc finger%2C CCCH-type (IPR000571),U2 auxiliary factor small subunit (IPR009145),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J065168K03;TENOR=Os01t0667800-01;KEGG=Os01t0667800-01
Chr01	irgsp1_rep	five_prime_UTR	27318406	27320807	.	-	.	Parent=Os01t0667800-01
Chr01	irgsp1_rep	CDS	27317782	27318405	.	-	0	Parent=Os01t0667800-01
Chr01	irgsp1_rep	three_prime_UTR	27317349	27317781	.	-	.	Parent=Os01t0667800-01
Chr01	irgsp1_rep	mRNA	27326050	27327025	.	-	.	ID=Os01t0667900-01;Name=Os01t0667900-01;Locus_id=Os01g0667900;RAP-DB Gene Symbol Synonym(s)=GRX6%2C OsGRX6;RAP-DB Gene Name Synonym(s)=GLUTAREDOXIN 6%2C glutaredoxin 6;CGSNL Gene Symbol=GRX6;CGSNL Gene Name=GLUTAREDOXIN 6;Oryzabase Gene Symbol Synonym(s)=OsGRX6%2C OsGrx_I1%2C Grx_I1;Oryzabase Gene Name Synonym(s)=glutaredoxin 6;Note=CC-type glutaredoxin%2C Homeostatic regulation of nitrogen use%2C Hormone signaling;Transcript_evidence=AK105335;ORF_evidence=Q5QLR2;GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin-like%2C plant II (IPR011905),Glutaredoxin (IPR002109),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=001-118-E04;Manual Curation=April 7%2C 2016;Literature_PMID=26579177;Oryzabase=13567;Expression=AK105335;TENOR=Os01t0667900-01;KEGG=Os01t0667900-01
Chr01	irgsp1_rep	five_prime_UTR	27326884	27327025	.	-	.	Parent=Os01t0667900-01
Chr01	irgsp1_rep	CDS	27326440	27326883	.	-	0	Parent=Os01t0667900-01
Chr01	irgsp1_rep	three_prime_UTR	27326050	27326439	.	-	.	Parent=Os01t0667900-01
Chr01	irgsp1_rep	mRNA	27336260	27339335	.	+	.	ID=Os01t0668000-01;Name=Os01t0668000-01;Locus_id=Os01g0668000;Note=CS domain containing protein.;Transcript_evidence=AK061159 (DDBJ%2C Best hit);ORF_evidence=B6SNS1 (UniProt);InterPro=CS-like domain (IPR007052),HSP20-like chaperone (IPR008978),CS domain (IPR017447);NIAS_FLcDNA=006-208-H06;Expression=AK061159;TENOR=Os01t0668000-01;KEGG=Os01t0668000-01
Chr01	irgsp1_rep	five_prime_UTR	27336260	27336583	.	+	.	Parent=Os01t0668000-01
Chr01	irgsp1_rep	five_prime_UTR	27337266	27337274	.	+	.	Parent=Os01t0668000-01
Chr01	irgsp1_rep	CDS	27337275	27337323	.	+	0	Parent=Os01t0668000-01
Chr01	irgsp1_rep	CDS	27337423	27337571	.	+	2	Parent=Os01t0668000-01
Chr01	irgsp1_rep	CDS	27337691	27337739	.	+	0	Parent=Os01t0668000-01
Chr01	irgsp1_rep	CDS	27338309	27338451	.	+	2	Parent=Os01t0668000-01
Chr01	irgsp1_rep	CDS	27338934	27339020	.	+	0	Parent=Os01t0668000-01
Chr01	irgsp1_rep	three_prime_UTR	27339021	27339335	.	+	.	Parent=Os01t0668000-01
Chr01	irgsp1_rep	mRNA	27336291	27339335	.	+	.	ID=Os01t0668000-02;Name=Os01t0668000-02;Locus_id=Os01g0668000;Note=CS domain containing protein.;Transcript_evidence=AK101664 (DDBJ%2C Best hit);ORF_evidence=B6SNS1 (UniProt);InterPro=CS-like domain (IPR007052),HSP20-like chaperone (IPR008978),CS domain (IPR017447);NIAS_FLcDNA=J033057M08;Expression=AK101664;TENOR=Os01t0668000-02;KEGG=Os01t0668000-02
Chr01	irgsp1_rep	five_prime_UTR	27336291	27336583	.	+	.	Parent=Os01t0668000-02
Chr01	irgsp1_rep	five_prime_UTR	27337266	27337274	.	+	.	Parent=Os01t0668000-02
Chr01	irgsp1_rep	CDS	27337275	27337323	.	+	0	Parent=Os01t0668000-02
Chr01	irgsp1_rep	CDS	27337423	27337571	.	+	2	Parent=Os01t0668000-02
Chr01	irgsp1_rep	CDS	27337691	27337739	.	+	0	Parent=Os01t0668000-02
Chr01	irgsp1_rep	CDS	27338309	27338451	.	+	2	Parent=Os01t0668000-02
Chr01	irgsp1_rep	CDS	27338934	27339020	.	+	0	Parent=Os01t0668000-02
Chr01	irgsp1_rep	three_prime_UTR	27339021	27339335	.	+	.	Parent=Os01t0668000-02
Chr01	irgsp1_rep	mRNA	27340911	27341950	.	-	.	ID=Os01t0668100-01;Name=Os01t0668100-01;Locus_id=Os01g0668100;CGSNL Gene Symbol=FLA7;CGSNL Gene Name=FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 7;Oryzabase Gene Symbol Synonym(s)=OsFLA7;Oryzabase Gene Name Synonym(s)=fasciclin-like AGP 7%2C fasciclin-like arabinogalactan protein 7;Note=Similar to Arabinogalactan-like protein.;Transcript_evidence=AK105603 (DDBJ%2C Best hit);ORF_evidence=Q06I92 (UniProt);InterPro=FAS1 domain (IPR000782);NIAS_FLcDNA=001-200-A09;Oryzabase=11342;Expression=AK105603;TENOR=Os01t0668100-01;KEGG=Os01t0668100-01
Chr01	irgsp1_rep	five_prime_UTR	27341898	27341950	.	-	.	Parent=Os01t0668100-01
Chr01	irgsp1_rep	CDS	27341154	27341897	.	-	0	Parent=Os01t0668100-01
Chr01	irgsp1_rep	three_prime_UTR	27340911	27341153	.	-	.	Parent=Os01t0668100-01
Chr01	irgsp1_rep	mRNA	27354111	27355778	.	+	.	ID=Os01t0668200-00;Name=Os01t0668200-00;Locus_id=Os01g0668200;Note=Conserved hypothetical protein.;Transcript_evidence=EU964274 (DDBJ);ORF_evidence=B8A778 (UniProt);TENOR=Os01t0668200-00
Chr01	irgsp1_rep	CDS	27354111	27355778	.	+	0	Parent=Os01t0668200-00
Chr01	irgsp1_rep	mRNA	27357348	27363078	.	+	.	ID=Os01t0668300-01;Name=Os01t0668300-01;Locus_id=Os01g0668300;Note=Conserved hypothetical protein.;Transcript_evidence=AK102266 (DDBJ%2C Best hit);ORF_evidence=B9EYI8 (UniProt);NIAS_FLcDNA=J033088N13;TENOR=Os01t0668300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	27357348	27357348	.	+	.	Parent=Os01t0668300-01
Chr01	irgsp1_rep	CDS	27357349	27357823	.	+	0	Parent=Os01t0668300-01
Chr01	irgsp1_rep	CDS	27359192	27359415	.	+	2	Parent=Os01t0668300-01
Chr01	irgsp1_rep	CDS	27360390	27361348	.	+	0	Parent=Os01t0668300-01
Chr01	irgsp1_rep	CDS	27361526	27362699	.	+	1	Parent=Os01t0668300-01
Chr01	irgsp1_rep	three_prime_UTR	27362700	27363078	.	+	.	Parent=Os01t0668300-01
Chr01	irgsp1_rep	mRNA	27366269	27368704	.	-	.	ID=Os01t0668400-00;Name=Os01t0668400-00;Locus_id=Os01g0668400;Note=Similar to predicted protein.;Transcript_evidence=AK365081 (DDBJ);ORF_evidence=B9EYI9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Epidermal growth factor-like%2C type 3 (IPR000742),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),PAN-1 domain (IPR003014),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os01t0668400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	27366317	27368704	.	-	0	Parent=Os01t0668400-00
Chr01	irgsp1_rep	three_prime_UTR	27366269	27366316	.	-	.	Parent=Os01t0668400-00
Chr01	irgsp1_rep	mRNA	27367535	27368981	.	+	.	ID=Os01t0668500-01;Name=Os01t0668500-01;Locus_id=Os01g0668500;Note=Hypothetical protein.;Transcript_evidence=AK108767 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-150-H02;Expression=AK108767;TENOR=Os01t0668500-01;KEGG=Os01t0668500-01
Chr01	irgsp1_rep	five_prime_UTR	27367535	27368108	.	+	.	Parent=Os01t0668500-01
Chr01	irgsp1_rep	CDS	27368109	27368510	.	+	0	Parent=Os01t0668500-01
Chr01	irgsp1_rep	three_prime_UTR	27368511	27368981	.	+	.	Parent=Os01t0668500-01
Chr01	irgsp1_rep	mRNA	27375122	27377698	.	-	.	ID=Os01t0668600-00;Name=Os01t0668600-00;Locus_id=Os01g0668600;Note=Curculin-like (mannose-binding) lectin domain containing protein.;Transcript_evidence=AK365081 (DDBJ);ORF_evidence=NP_001043817.2 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),PAN-1 domain (IPR003014),Apple-like (IPR003609),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),S-receptor-like serine/threonine-protein kinase (IPR024171);TENOR=Os01t0668600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	27375305	27377698	.	-	0	Parent=Os01t0668600-00
Chr01	irgsp1_rep	three_prime_UTR	27375122	27375304	.	-	.	Parent=Os01t0668600-00
Chr01	irgsp1_rep	mRNA	27385840	27390795	.	-	.	ID=Os01t0668700-01;Name=Os01t0668700-01;Locus_id=Os01g0668700;Note=Hypothetical protein.;Transcript_evidence=AK067957 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013128M05;TENOR=Os01t0668700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	27390644	27390795	.	-	.	Parent=Os01t0668700-01
Chr01	irgsp1_rep	five_prime_UTR	27389140	27390395	.	-	.	Parent=Os01t0668700-01
Chr01	irgsp1_rep	five_prime_UTR	27386972	27387529	.	-	.	Parent=Os01t0668700-01
Chr01	irgsp1_rep	CDS	27386732	27386971	.	-	0	Parent=Os01t0668700-01
Chr01	irgsp1_rep	three_prime_UTR	27386339	27386731	.	-	.	Parent=Os01t0668700-01
Chr01	irgsp1_rep	three_prime_UTR	27385840	27386242	.	-	.	Parent=Os01t0668700-01
Chr01	irgsp1_rep	mRNA	27386571	27389102	.	+	.	ID=Os01t0668901-00;Name=Os01t0668901-00;Locus_id=Os01g0668901;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK365081 (DDBJ);ORF_evidence=Q5QLR7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Epidermal growth factor-like%2C type 3 (IPR000742),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Apple-like (IPR003609),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os01t0668901-00
Chr01	irgsp1_rep	CDS	27386571	27388916	.	+	0	Parent=Os01t0668901-00
Chr01	irgsp1_rep	three_prime_UTR	27388917	27389102	.	+	.	Parent=Os01t0668901-00
Chr01	irgsp1_rep	mRNA	27417284	27420084	.	-	.	ID=Os01t0669100-01;Name=Os01t0669100-01;Locus_id=Os01g0669100;RAP-DB Gene Symbol Synonym(s)=OsLSK1%2C LSK1;RAP-DB Gene Name Synonym(s)=Large spike S-domain receptor like Kinase 1;Oryzabase Gene Symbol Synonym(s)=OsLSK1%2C LSK1;Oryzabase Gene Name Synonym(s)=Large spike S-domain receptor like Kinase 1;Note=S-domain receptor-like kinase%2C OsPR1b-interacting factor%2C Resistance protein%2C Grain yield%2C Disease resistance;Transcript_evidence=AK111612;ORF_evidence=Q8W054;GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524);InterPro=S-receptor-like serine/threonine-protein kinase (IPR024171),Bulb-type lectin domain (IPR001480),S-locus glycoprotein domain (IPR000858),PAN/Apple domain (IPR003609),Concanavalin A-like lectin/glucanase domain (IPR013320),Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J013102N03;Manual Curation=June 3%2C 2016;Literature_PMID=26428067,25867332;Oryzabase=19549;Expression=AK111612;TENOR=Os01t0669100-01;KEGG=Os01t0669100-01
Chr01	irgsp1_rep	five_prime_UTR	27420039	27420084	.	-	.	Parent=Os01t0669100-01
Chr01	irgsp1_rep	CDS	27417579	27420038	.	-	0	Parent=Os01t0669100-01
Chr01	irgsp1_rep	three_prime_UTR	27417284	27417578	.	-	.	Parent=Os01t0669100-01
Chr01	irgsp1_rep	mRNA	27417414	27420050	.	-	.	ID=Os01t0669100-02;Name=Os01t0669100-02;Locus_id=Os01g0669100;Oryzabase Gene Symbol Synonym(s)=OsLSK1%2C LSK1;Oryzabase Gene Name Synonym(s)=Large spike S-domain receptor like Kinase 1;Note=Similar to Resistance protein candidate (Fragment).;Transcript_evidence=AK111622 (DDBJ%2C Best hit);ORF_evidence=B8A782 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),S-receptor-like serine/threonine-protein kinase (IPR024171);NIAS_FLcDNA=J013108D17;Oryzabase=19549;Expression=AK111622;TENOR=Os01t0669100-02;KEGG=Os01t0669100-02
Chr01	irgsp1_rep	five_prime_UTR	27420039	27420050	.	-	.	Parent=Os01t0669100-02
Chr01	irgsp1_rep	CDS	27417579	27420038	.	-	0	Parent=Os01t0669100-02
Chr01	irgsp1_rep	three_prime_UTR	27417414	27417578	.	-	.	Parent=Os01t0669100-02
Chr01	irgsp1_rep	mRNA	27474092	27476781	.	-	.	ID=Os01t0670100-01;Name=Os01t0670100-01;Locus_id=Os01g0670100;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK101461 (DDBJ%2C Best hit);ORF_evidence=A2WTM1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Apple-like (IPR003609),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033040F09;Expression=AK101461;TENOR=Os01t0670100-01;KEGG=Os01t0670100-01
Chr01	irgsp1_rep	five_prime_UTR	27476735	27476781	.	-	.	Parent=Os01t0670100-01
Chr01	irgsp1_rep	CDS	27474290	27476734	.	-	0	Parent=Os01t0670100-01
Chr01	irgsp1_rep	three_prime_UTR	27474092	27474289	.	-	.	Parent=Os01t0670100-01
Chr01	irgsp1_rep	mRNA	27482811	27486797	.	+	.	ID=Os01t0670200-01;Name=Os01t0670200-01;Locus_id=Os01g0670200;Note=Non-protein coding transcript.;Transcript_evidence=AK101638 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J033055F24;TENOR=Os01t0670200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	exon	27482811	27483140	.	+	.	Parent=Os01t0670200-01
Chr01	irgsp1_rep	exon	27485556	27486797	.	+	.	Parent=Os01t0670200-01
Chr01	irgsp1_rep	mRNA	27491023	27492614	.	-	.	ID=Os01t0670500-01;Name=Os01t0670500-01;Locus_id=Os01g0670500;Note=Conserved hypothetical protein.;Transcript_evidence=AK109750 (DDBJ%2C Best hit);ORF_evidence=NP_001059857.1 (RefSeq);NIAS_FLcDNA=002-146-F07;TENOR=Os01t0670500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	27492251	27492614	.	-	.	Parent=Os01t0670500-01
Chr01	irgsp1_rep	CDS	27492101	27492250	.	-	0	Parent=Os01t0670500-01
Chr01	irgsp1_rep	three_prime_UTR	27491023	27492100	.	-	.	Parent=Os01t0670500-01
Chr01	irgsp1_rep	mRNA	27493829	27496509	.	-	.	ID=Os01t0670600-01;Name=Os01t0670600-01;Locus_id=Os01g0670600;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK111885 (DDBJ%2C Best hit);ORF_evidence=Q5QLR7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033068D10;TENOR=Os01t0670600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	27496509	27496509	.	-	.	Parent=Os01t0670600-01
Chr01	irgsp1_rep	CDS	27494211	27496508	.	-	0	Parent=Os01t0670600-01
Chr01	irgsp1_rep	three_prime_UTR	27493829	27494210	.	-	.	Parent=Os01t0670600-01
Chr01	irgsp1_rep	mRNA	27501563	27506654	.	-	.	ID=Os01t0670800-01;Name=Os01t0670800-01;Locus_id=Os01g0670800;Oryzabase Gene Symbol Synonym(s)=OsARF2%2C ARF2%2C OsETT2%2C ETT2%2C ARF3a%2C DLN16%2C OsDLN16;Oryzabase Gene Name Synonym(s)=auxin response factor-2%2C auxin response factor 2%2C OsETTIN2%2C ETTIN 2%2C DLN repressor 16%2C DLN motif protein 16%2C ARF2-LIKE;Note=Similar to Auxin response factor 2.;Transcript_evidence=AK103776 (DDBJ%2C Best hit);ORF_evidence=Q0JKI9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: response to hormone stimulus (GO:0009725),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),Auxin response factor (IPR010525),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=J033143P19;Oryzabase=9996;Expression=AK103776;TENOR=Os01t0670800-01;KEGG=Os01t0670800-01
Chr01	irgsp1_rep	five_prime_UTR	27506654	27506654	.	-	.	Parent=Os01t0670800-01
Chr01	irgsp1_rep	CDS	27506585	27506653	.	-	0	Parent=Os01t0670800-01
Chr01	irgsp1_rep	CDS	27506297	27506482	.	-	0	Parent=Os01t0670800-01
Chr01	irgsp1_rep	CDS	27506123	27506207	.	-	0	Parent=Os01t0670800-01
Chr01	irgsp1_rep	CDS	27505437	27505527	.	-	2	Parent=Os01t0670800-01
Chr01	irgsp1_rep	CDS	27505196	27505360	.	-	1	Parent=Os01t0670800-01
Chr01	irgsp1_rep	CDS	27504053	27504184	.	-	1	Parent=Os01t0670800-01
Chr01	irgsp1_rep	CDS	27503878	27503950	.	-	1	Parent=Os01t0670800-01
Chr01	irgsp1_rep	CDS	27503094	27503253	.	-	0	Parent=Os01t0670800-01
Chr01	irgsp1_rep	CDS	27502139	27503007	.	-	2	Parent=Os01t0670800-01
Chr01	irgsp1_rep	CDS	27502003	27502068	.	-	0	Parent=Os01t0670800-01
Chr01	irgsp1_rep	three_prime_UTR	27501563	27502002	.	-	.	Parent=Os01t0670800-01
Chr01	irgsp1_rep	mRNA	27501506	27507181	.	-	.	ID=Os01t0670800-02;Name=Os01t0670800-02;Locus_id=Os01g0670800;RAP-DB Gene Symbol Synonym(s)=OsARF2%2C OsETT2%2C ARF3a;RAP-DB Gene Name Synonym(s)=auxin response factor-2%2C auxin response factor 2%2C OsETTIN2;Oryzabase Gene Symbol Synonym(s)=OsARF2%2C ARF2%2C OsETT2%2C ETT2%2C ARF3a%2C DLN16%2C OsDLN16;Oryzabase Gene Name Synonym(s)=auxin response factor-2%2C auxin response factor 2%2C OsETTIN2%2C ETTIN 2%2C DLN repressor 16%2C DLN motif protein 16%2C ARF2-LIKE;Note=Ortholog of Arabidopsis ETTIN%2C Awn development;Transcript_evidence=AB071291;ORF_evidence=Q0JKI9;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Biological Process: response to hormone (GO:0009725),Molecular Function: DNA binding (GO:0003677),Cellular Component: nucleus (GO:0005634);InterPro=DNA-binding pseudobarrel domain (IPR015300),B3 DNA binding domain (IPR003340),Auxin response factor (IPR010525);Manual Curation=January 26%2C 2017;Literature_PMID=24330191,11922106;Oryzabase=9996
Chr01	irgsp1_rep	five_prime_UTR	27507025	27507181	.	-	.	Parent=Os01t0670800-02
Chr01	irgsp1_rep	CDS	27506740	27507024	.	-	0	Parent=Os01t0670800-02
Chr01	irgsp1_rep	CDS	27506585	27506641	.	-	0	Parent=Os01t0670800-02
Chr01	irgsp1_rep	CDS	27506297	27506482	.	-	0	Parent=Os01t0670800-02
Chr01	irgsp1_rep	CDS	27506123	27506207	.	-	0	Parent=Os01t0670800-02
Chr01	irgsp1_rep	CDS	27505437	27505527	.	-	2	Parent=Os01t0670800-02
Chr01	irgsp1_rep	CDS	27505196	27505360	.	-	1	Parent=Os01t0670800-02
Chr01	irgsp1_rep	CDS	27504053	27504172	.	-	1	Parent=Os01t0670800-02
Chr01	irgsp1_rep	CDS	27503878	27503950	.	-	1	Parent=Os01t0670800-02
Chr01	irgsp1_rep	CDS	27503094	27503253	.	-	0	Parent=Os01t0670800-02
Chr01	irgsp1_rep	CDS	27502139	27503007	.	-	2	Parent=Os01t0670800-02
Chr01	irgsp1_rep	CDS	27502003	27502068	.	-	0	Parent=Os01t0670800-02
Chr01	irgsp1_rep	three_prime_UTR	27501506	27502002	.	-	.	Parent=Os01t0670800-02
Chr01	irgsp1_rep	mRNA	27556027	27560681	.	-	.	ID=Os01t0672100-02;Name=Os01t0672100-02;Locus_id=Os01g0672100;CGSNL Gene Symbol=NAC73;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 73;Oryzabase Gene Symbol Synonym(s)=ONAC073%2C ONAC73%2C OsSND2%2C SND2;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 073%2C NAC domain-containing protein 73%2C SECONDARY WALL-ASSOCIATED NAC PROTEIN2;Note=No apical meristem (NAM) protein domain containing protein.;Transcript_evidence=AK102794 (DDBJ%2C Best hit),AK060307 (DDBJ%2C Best hit);ORF_evidence=NP_001148826.1 (RefSeq);NIAS_FLcDNA=J033108B03,001-007-A11;Oryzabase=11497;Expression=AK102794;TENOR=Os01t0672100-02;KEGG=Os01t0672100-02
Chr01	irgsp1_rep	five_prime_UTR	27560500	27560681	.	-	.	Parent=Os01t0672100-02
Chr01	irgsp1_rep	CDS	27560332	27560499	.	-	0	Parent=Os01t0672100-02
Chr01	irgsp1_rep	CDS	27560032	27560237	.	-	0	Parent=Os01t0672100-02
Chr01	irgsp1_rep	CDS	27556601	27556985	.	-	1	Parent=Os01t0672100-02
Chr01	irgsp1_rep	three_prime_UTR	27556027	27556600	.	-	.	Parent=Os01t0672100-02
Chr01	irgsp1_rep	mRNA	27568812	27570626	.	-	.	ID=Os01t0672166-00;Name=Os01t0672166-00;Locus_id=Os01g0672166;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK376659 (DDBJ);ORF_evidence=Q5QMQ6 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);TENOR=Os01t0672166-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	27569004	27570626	.	-	0	Parent=Os01t0672166-00
Chr01	irgsp1_rep	three_prime_UTR	27568812	27569003	.	-	.	Parent=Os01t0672166-00
Chr01	irgsp1_rep	mRNA	27582039	27585096	.	+	.	ID=Os01t0672201-00;Name=Os01t0672201-00;Locus_id=Os01g0672201;Note=Homeobox domain containing protein.;Transcript_evidence=FJ940210 (DDBJ%2C Best hit);ORF_evidence=Q5QMQ5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);TENOR=Os01t0672201-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	27582039	27582147	.	+	.	Parent=Os01t0672201-00
Chr01	irgsp1_rep	CDS	27582148	27582346	.	+	0	Parent=Os01t0672201-00
Chr01	irgsp1_rep	CDS	27582465	27582983	.	+	2	Parent=Os01t0672201-00
Chr01	irgsp1_rep	CDS	27584804	27584892	.	+	2	Parent=Os01t0672201-00
Chr01	irgsp1_rep	three_prime_UTR	27584893	27585096	.	+	.	Parent=Os01t0672201-00
Chr01	irgsp1_rep	mRNA	27595166	27598806	.	+	.	ID=Os01t0672300-01;Name=Os01t0672300-01;Locus_id=Os01g0672300;CGSNL Gene Symbol=DLN17;CGSNL Gene Name=DLN REPRESSOR 17;Oryzabase Gene Symbol Synonym(s)=OsDLN17;Oryzabase Gene Name Synonym(s)=DDT transcription factor%2C DLN repressor 17%2C DLN motif protein 17;Note=Conserved hypothetical protein.;Transcript_evidence=AK107129 (DDBJ%2C Best hit);ORF_evidence=B9EYJ4 (UniProt);NIAS_FLcDNA=002-124-C03;Oryzabase=16186;TENOR=Os01t0672300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	27595166	27595237	.	+	0	Parent=Os01t0672300-01
Chr01	irgsp1_rep	CDS	27595337	27595441	.	+	0	Parent=Os01t0672300-01
Chr01	irgsp1_rep	CDS	27597202	27597453	.	+	0	Parent=Os01t0672300-01
Chr01	irgsp1_rep	CDS	27597681	27598508	.	+	0	Parent=Os01t0672300-01
Chr01	irgsp1_rep	three_prime_UTR	27598509	27598806	.	+	.	Parent=Os01t0672300-01
Chr01	irgsp1_rep	mRNA	27601487	27604798	.	+	.	ID=Os01t0672400-01;Name=Os01t0672400-01;Locus_id=Os01g0672400;Oryzabase Gene Symbol Synonym(s)=OsDi19-3;Oryzabase Gene Name Synonym(s)=drought-induced 19-3;Note=Drought induced 19 family protein.;Transcript_evidence=AK061329 (DDBJ%2C Best hit);ORF_evidence=Q5QMP3 (UniProt);InterPro=Drought induced 19/ RING finger protein 114 (IPR008598);NIAS_FLcDNA=006-303-A03;Oryzabase=18578;Expression=AK061329;TENOR=Os01t0672400-01;KEGG=Os01t0672400-01
Chr01	irgsp1_rep	five_prime_UTR	27601487	27601866	.	+	.	Parent=Os01t0672400-01
Chr01	irgsp1_rep	CDS	27601867	27601942	.	+	0	Parent=Os01t0672400-01
Chr01	irgsp1_rep	CDS	27602040	27602236	.	+	2	Parent=Os01t0672400-01
Chr01	irgsp1_rep	CDS	27603384	27603461	.	+	0	Parent=Os01t0672400-01
Chr01	irgsp1_rep	CDS	27603578	27603858	.	+	0	Parent=Os01t0672400-01
Chr01	irgsp1_rep	CDS	27604437	27604545	.	+	1	Parent=Os01t0672400-01
Chr01	irgsp1_rep	three_prime_UTR	27604546	27604798	.	+	.	Parent=Os01t0672400-01
Chr01	irgsp1_rep	mRNA	27601505	27604913	.	+	.	ID=Os01t0672400-02;Name=Os01t0672400-02;Locus_id=Os01g0672400;Oryzabase Gene Symbol Synonym(s)=OsDi19-3;Oryzabase Gene Name Synonym(s)=drought-induced 19-3;Note=Similar to Protein DEHYDRATION-INDUCED 19 homolog 3.;Transcript_evidence=AK064817 (DDBJ%2C Best hit);ORF_evidence=Q5QMP3 (UniProt);InterPro=Drought induced 19/ RING finger protein 114 (IPR008598);NIAS_FLcDNA=J013000E14;Oryzabase=18578;Expression=AK064817;TENOR=Os01t0672400-02;KEGG=Os01t0672400-02
Chr01	irgsp1_rep	five_prime_UTR	27601505	27601866	.	+	.	Parent=Os01t0672400-02
Chr01	irgsp1_rep	CDS	27601867	27601942	.	+	0	Parent=Os01t0672400-02
Chr01	irgsp1_rep	CDS	27602040	27602284	.	+	2	Parent=Os01t0672400-02
Chr01	irgsp1_rep	three_prime_UTR	27602285	27603461	.	+	.	Parent=Os01t0672400-02
Chr01	irgsp1_rep	three_prime_UTR	27603578	27603858	.	+	.	Parent=Os01t0672400-02
Chr01	irgsp1_rep	three_prime_UTR	27604437	27604913	.	+	.	Parent=Os01t0672400-02
Chr01	irgsp1_rep	mRNA	27601545	27604846	.	+	.	ID=Os01t0672400-03;Name=Os01t0672400-03;Locus_id=Os01g0672400;Oryzabase Gene Symbol Synonym(s)=OsDi19-3;Oryzabase Gene Name Synonym(s)=drought-induced 19-3;Note=Drought induced 19 family protein.;Transcript_evidence=AK060901 (DDBJ%2C Best hit);ORF_evidence=Q5QMP3 (UniProt);InterPro=Drought induced 19/ RING finger protein 114 (IPR008598);NIAS_FLcDNA=001-035-D08;Oryzabase=18578;Expression=AK060901;TENOR=Os01t0672400-03;KEGG=Os01t0672400-03
Chr01	irgsp1_rep	five_prime_UTR	27601545	27601866	.	+	.	Parent=Os01t0672400-03
Chr01	irgsp1_rep	CDS	27601867	27601942	.	+	0	Parent=Os01t0672400-03
Chr01	irgsp1_rep	CDS	27602040	27602236	.	+	2	Parent=Os01t0672400-03
Chr01	irgsp1_rep	CDS	27603384	27603461	.	+	0	Parent=Os01t0672400-03
Chr01	irgsp1_rep	CDS	27603578	27603858	.	+	0	Parent=Os01t0672400-03
Chr01	irgsp1_rep	CDS	27604437	27604545	.	+	1	Parent=Os01t0672400-03
Chr01	irgsp1_rep	three_prime_UTR	27604546	27604846	.	+	.	Parent=Os01t0672400-03
Chr01	irgsp1_rep	mRNA	27601815	27604909	.	+	.	ID=Os01t0672400-04;Name=Os01t0672400-04;Locus_id=Os01g0672400;Oryzabase Gene Symbol Synonym(s)=OsDi19-3;Oryzabase Gene Name Synonym(s)=drought-induced 19-3;Note=Drought induced 19 family protein.;Transcript_evidence=AK101922 (DDBJ%2C Best hit);ORF_evidence=Q5QMP3 (UniProt);InterPro=Drought induced 19/ RING finger protein 114 (IPR008598);NIAS_FLcDNA=J033071L05;Oryzabase=18578;Expression=AK101922;TENOR=Os01t0672400-04;KEGG=Os01t0672400-04
Chr01	irgsp1_rep	five_prime_UTR	27601815	27601866	.	+	.	Parent=Os01t0672400-04
Chr01	irgsp1_rep	CDS	27601867	27601942	.	+	0	Parent=Os01t0672400-04
Chr01	irgsp1_rep	CDS	27602040	27602236	.	+	2	Parent=Os01t0672400-04
Chr01	irgsp1_rep	CDS	27603384	27603461	.	+	0	Parent=Os01t0672400-04
Chr01	irgsp1_rep	CDS	27603578	27603858	.	+	0	Parent=Os01t0672400-04
Chr01	irgsp1_rep	CDS	27604437	27604545	.	+	1	Parent=Os01t0672400-04
Chr01	irgsp1_rep	three_prime_UTR	27604546	27604909	.	+	.	Parent=Os01t0672400-04
Chr01	irgsp1_rep	mRNA	27606058	27608639	.	-	.	ID=Os01t0672500-01;Name=Os01t0672500-01;Locus_id=Os01g0672500;CGSNL Gene Symbol=GSL2;CGSNL Gene Name=BETA-1%2C3-GLUCANASE ACTIVITY 2;Oryzabase Gene Symbol Synonym(s)=OsGSL2;Oryzabase Gene Name Synonym(s)=Oryza sativa callose synthase 2%2C callose synthase 2;Note=Glycosyl transferase%2C family 48 protein.;Transcript_evidence=AK060407 (DDBJ%2C Best hit);ORF_evidence=C6GFB6 (UniProt);GO=Biological Process: 1%2C3-beta-D-glucan biosynthetic process (GO:0006075),Cellular Component: 1%2C3-beta-D-glucan synthase complex (GO:0000148),Cellular Component: membrane (GO:0016020),Molecular Function: 1%2C3-beta-D-glucan synthase activity (GO:0003843);InterPro=Glycosyl transferase%2C family 48 (IPR003440);NIAS_FLcDNA=001-010-D06;Oryzabase=8537;Expression=AK060407;TENOR=Os01t0672500-01;KEGG=Os01t0672500-01 (EC:2.4.1.34)
Chr01	irgsp1_rep	five_prime_UTR	27608639	27608639	.	-	.	Parent=Os01t0672500-01
Chr01	irgsp1_rep	CDS	27607208	27608638	.	-	0	Parent=Os01t0672500-01
Chr01	irgsp1_rep	three_prime_UTR	27607207	27607207	.	-	.	Parent=Os01t0672500-01
Chr01	irgsp1_rep	three_prime_UTR	27606383	27606453	.	-	.	Parent=Os01t0672500-01
Chr01	irgsp1_rep	three_prime_UTR	27606058	27606300	.	-	.	Parent=Os01t0672500-01
Chr01	irgsp1_rep	mRNA	27623546	27623897	.	-	.	ID=Os01t0672600-01;Name=Os01t0672600-01;Locus_id=Os01g0672600;Note=Non-protein coding transcript.;Transcript_evidence=AK241779 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065206A03;TENOR=Os01t0672600-01
Chr01	irgsp1_rep	exon	27623546	27623897	.	-	.	Parent=Os01t0672600-01
Chr01	irgsp1_rep	mRNA	27624620	27630340	.	+	.	ID=Os01t0672700-01;Name=Os01t0672700-01;Locus_id=Os01g0672700;CGSNL Gene Symbol=NTP2;CGSNL Gene Name=NUCLEOTIDYL TRANSFERASE PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsNTP2;Oryzabase Gene Name Synonym(s)=nucleotidyl transferase protein 2;Note=Hypothetical conserved gene.;Transcript_evidence=AK105406 (DDBJ%2C Best hit);ORF_evidence=Q05K40 (UniProt);NIAS_FLcDNA=001-123-E11;Oryzabase=21885;Expression=AK105406;TENOR=Os01t0672700-01;KEGG=Os01t0672700-01
Chr01	irgsp1_rep	five_prime_UTR	27624620	27624701	.	+	.	Parent=Os01t0672700-01
Chr01	irgsp1_rep	CDS	27624702	27625290	.	+	0	Parent=Os01t0672700-01
Chr01	irgsp1_rep	CDS	27625702	27625810	.	+	2	Parent=Os01t0672700-01
Chr01	irgsp1_rep	CDS	27629931	27630111	.	+	1	Parent=Os01t0672700-01
Chr01	irgsp1_rep	three_prime_UTR	27630112	27630340	.	+	.	Parent=Os01t0672700-01
Chr01	irgsp1_rep	mRNA	27624723	27630339	.	+	.	ID=Os01t0672700-02;Name=Os01t0672700-02;Locus_id=Os01g0672700;CGSNL Gene Symbol=NTP2;CGSNL Gene Name=NUCLEOTIDYL TRANSFERASE PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsNTP2;Oryzabase Gene Name Synonym(s)=nucleotidyl transferase protein 2;Note=Nucleotidyltransferase domain containing protein.;Transcript_evidence=AK121375 (DDBJ%2C Best hit);ORF_evidence=NP_568798.1 (RefSeq);GO=Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=PAP/25A-associated (IPR002058),Nucleotidyl transferase domain (IPR002934);NIAS_FLcDNA=J023127C22;Oryzabase=21885;Expression=AK121375;TENOR=Os01t0672700-02;KEGG=Os01t0672700-02
Chr01	irgsp1_rep	five_prime_UTR	27624723	27624857	.	+	.	Parent=Os01t0672700-02
Chr01	irgsp1_rep	CDS	27624858	27625290	.	+	0	Parent=Os01t0672700-02
Chr01	irgsp1_rep	CDS	27625702	27625812	.	+	2	Parent=Os01t0672700-02
Chr01	irgsp1_rep	CDS	27625909	27625967	.	+	2	Parent=Os01t0672700-02
Chr01	irgsp1_rep	CDS	27626519	27626614	.	+	0	Parent=Os01t0672700-02
Chr01	irgsp1_rep	CDS	27626926	27626996	.	+	0	Parent=Os01t0672700-02
Chr01	irgsp1_rep	CDS	27627085	27627127	.	+	1	Parent=Os01t0672700-02
Chr01	irgsp1_rep	CDS	27627244	27627324	.	+	0	Parent=Os01t0672700-02
Chr01	irgsp1_rep	CDS	27627426	27627485	.	+	0	Parent=Os01t0672700-02
Chr01	irgsp1_rep	CDS	27627760	27627825	.	+	0	Parent=Os01t0672700-02
Chr01	irgsp1_rep	CDS	27628100	27628197	.	+	0	Parent=Os01t0672700-02
Chr01	irgsp1_rep	CDS	27628536	27628584	.	+	1	Parent=Os01t0672700-02
Chr01	irgsp1_rep	CDS	27628675	27628719	.	+	0	Parent=Os01t0672700-02
Chr01	irgsp1_rep	CDS	27629587	27630111	.	+	0	Parent=Os01t0672700-02
Chr01	irgsp1_rep	three_prime_UTR	27630112	27630339	.	+	.	Parent=Os01t0672700-02
Chr01	irgsp1_rep	mRNA	27631023	27633082	.	-	.	ID=Os01t0672800-01;Name=Os01t0672800-01;Locus_id=Os01g0672800;Note=Protein of unknown function DUF1421 domain containing protein.;Transcript_evidence=AK101605 (DDBJ%2C Best hit);ORF_evidence=A2ZWF4 (UniProt);InterPro=Protein of unknown function DUF1421 (IPR010820);NIAS_FLcDNA=J033051L23;TENOR=Os01t0672800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	27632945	27633082	.	-	0	Parent=Os01t0672800-01
Chr01	irgsp1_rep	CDS	27631330	27632559	.	-	0	Parent=Os01t0672800-01
Chr01	irgsp1_rep	three_prime_UTR	27631023	27631329	.	-	.	Parent=Os01t0672800-01
Chr01	irgsp1_rep	mRNA	27656267	27657910	.	+	.	ID=Os01t0673300-01;Name=Os01t0673300-01;Locus_id=Os01g0673300;Oryzabase Gene Symbol Synonym(s)=Os_F0653;Note=Protein of unknown function DUF295 family protein.;Transcript_evidence=AK241411 (DDBJ%2C Best hit);ORF_evidence=NP_001043832.2 (RefSeq);InterPro=Protein of unknown function DUF295 (IPR005174);NIAS_FLcDNA=J065159L13;Oryzabase=17441;TENOR=Os01t0673300-01;KEGG=Os01t0673300-01
Chr01	irgsp1_rep	five_prime_UTR	27656267	27656525	.	+	.	Parent=Os01t0673300-01
Chr01	irgsp1_rep	CDS	27656526	27657701	.	+	0	Parent=Os01t0673300-01
Chr01	irgsp1_rep	three_prime_UTR	27657702	27657910	.	+	.	Parent=Os01t0673300-01
Chr01	irgsp1_rep	mRNA	27658843	27659146	.	-	.	ID=Os01t0673400-00;Name=Os01t0673400-00;Locus_id=Os01g0673400;Note=Conserved hypothetical protein.;Transcript_evidence=AK370999 (DDBJ);ORF_evidence=Q5QMP7 (UniProt);TENOR=Os01t0673400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	27659128	27659146	.	-	.	Parent=Os01t0673400-00
Chr01	irgsp1_rep	CDS	27658858	27659127	.	-	0	Parent=Os01t0673400-00
Chr01	irgsp1_rep	three_prime_UTR	27658843	27658857	.	-	.	Parent=Os01t0673400-00
Chr01	irgsp1_rep	mRNA	27660018	27666746	.	-	.	ID=Os01t0673500-01;Name=Os01t0673500-01;Locus_id=Os01g0673500;Note=Similar to predicted protein.;Transcript_evidence=AK069899 (DDBJ%2C Best hit);ORF_evidence=XP_001698289.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959);NIAS_FLcDNA=J023035A18;Expression=AK069899;TENOR=Os01t0673500-01;KEGG=Os01t0673500-01
Chr01	irgsp1_rep	five_prime_UTR	27666620	27666746	.	-	.	Parent=Os01t0673500-01
Chr01	irgsp1_rep	CDS	27666575	27666619	.	-	0	Parent=Os01t0673500-01
Chr01	irgsp1_rep	CDS	27666239	27666433	.	-	0	Parent=Os01t0673500-01
Chr01	irgsp1_rep	CDS	27666083	27666129	.	-	0	Parent=Os01t0673500-01
Chr01	irgsp1_rep	CDS	27665381	27665446	.	-	1	Parent=Os01t0673500-01
Chr01	irgsp1_rep	CDS	27665176	27665283	.	-	1	Parent=Os01t0673500-01
Chr01	irgsp1_rep	CDS	27664290	27664356	.	-	1	Parent=Os01t0673500-01
Chr01	irgsp1_rep	CDS	27663588	27663672	.	-	0	Parent=Os01t0673500-01
Chr01	irgsp1_rep	CDS	27662470	27662630	.	-	2	Parent=Os01t0673500-01
Chr01	irgsp1_rep	CDS	27661956	27662057	.	-	0	Parent=Os01t0673500-01
Chr01	irgsp1_rep	CDS	27661012	27661234	.	-	0	Parent=Os01t0673500-01
Chr01	irgsp1_rep	CDS	27660333	27660466	.	-	2	Parent=Os01t0673500-01
Chr01	irgsp1_rep	three_prime_UTR	27660018	27660332	.	-	.	Parent=Os01t0673500-01
Chr01	irgsp1_rep	mRNA	27660036	27666736	.	-	.	ID=Os01t0673500-02;Name=Os01t0673500-02;Locus_id=Os01g0673500;Note=Similar to Katanin p60 ATPase-containing subunit A1 (EC 3.6.4.3) (Katanin p60 subunit A1) (p60 katanin). Splice isoform 2.;Transcript_evidence=AK065017 (DDBJ%2C Best hit);ORF_evidence=XP_001698289.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959);NIAS_FLcDNA=J013001F15;Expression=AK065017;TENOR=Os01t0673500-02;KEGG=Os01t0673500-02 (EC:3.6.4.3)
Chr01	irgsp1_rep	five_prime_UTR	27666575	27666736	.	-	.	Parent=Os01t0673500-02
Chr01	irgsp1_rep	five_prime_UTR	27666379	27666433	.	-	.	Parent=Os01t0673500-02
Chr01	irgsp1_rep	CDS	27666296	27666378	.	-	0	Parent=Os01t0673500-02
Chr01	irgsp1_rep	CDS	27666239	27666275	.	-	1	Parent=Os01t0673500-02
Chr01	irgsp1_rep	CDS	27666083	27666129	.	-	0	Parent=Os01t0673500-02
Chr01	irgsp1_rep	CDS	27665381	27665446	.	-	1	Parent=Os01t0673500-02
Chr01	irgsp1_rep	CDS	27665176	27665283	.	-	1	Parent=Os01t0673500-02
Chr01	irgsp1_rep	CDS	27664290	27664356	.	-	1	Parent=Os01t0673500-02
Chr01	irgsp1_rep	CDS	27663588	27663672	.	-	0	Parent=Os01t0673500-02
Chr01	irgsp1_rep	CDS	27662470	27662630	.	-	2	Parent=Os01t0673500-02
Chr01	irgsp1_rep	CDS	27661956	27662057	.	-	0	Parent=Os01t0673500-02
Chr01	irgsp1_rep	CDS	27661012	27661234	.	-	0	Parent=Os01t0673500-02
Chr01	irgsp1_rep	CDS	27660333	27660466	.	-	2	Parent=Os01t0673500-02
Chr01	irgsp1_rep	three_prime_UTR	27660036	27660332	.	-	.	Parent=Os01t0673500-02
Chr01	irgsp1_rep	mRNA	27660034	27662548	.	-	.	ID=Os01t0673500-03;Name=Os01t0673500-03;Locus_id=Os01g0673500;Note=Similar to predicted protein.;Transcript_evidence=AK062045 (DDBJ%2C Best hit);ORF_evidence=XP_001698289.1 (RefSeq);GO=Molecular Function: ATP binding (GO:0005524);InterPro=ATPase%2C AAA-type%2C core (IPR003959);NIAS_FLcDNA=001-044-A09;Expression=AK062045;TENOR=Os01t0673500-03;KEGG=Os01t0673500-03
Chr01	irgsp1_rep	five_prime_UTR	27662548	27662548	.	-	.	Parent=Os01t0673500-03
Chr01	irgsp1_rep	CDS	27662470	27662547	.	-	0	Parent=Os01t0673500-03
Chr01	irgsp1_rep	CDS	27661956	27662057	.	-	0	Parent=Os01t0673500-03
Chr01	irgsp1_rep	CDS	27661012	27661234	.	-	0	Parent=Os01t0673500-03
Chr01	irgsp1_rep	CDS	27660333	27660466	.	-	2	Parent=Os01t0673500-03
Chr01	irgsp1_rep	three_prime_UTR	27660034	27660332	.	-	.	Parent=Os01t0673500-03
Chr01	irgsp1_rep	mRNA	27668585	27671611	.	-	.	ID=Os01t0673600-01;Name=Os01t0673600-01;Locus_id=Os01g0673600;RAP-DB Gene Symbol Synonym(s)=OsUbc13%2C Ubc13%2C OsUBC47%2C UBC47;RAP-DB Gene Name Synonym(s)=Ubiquitin conjugating enzyme 13%2C Ubiquitin-conjugating enzyme 47;Oryzabase Gene Symbol Synonym(s)=OsUbc13%2C Ubc13%2C OsUBC47%2C UBC47;Oryzabase Gene Name Synonym(s)=Ubiquitin conjugating enzyme 13%2C Ubiquitin-conjugating enzyme 47;Note=Ubiquitin-conjugating enzyme%2C Error-free DNA damage tolerance%2C Regulation of abiotic stress and hormone responses;Transcript_evidence=AK122067;ORF_evidence=Q8W0I1;InterPro=Ubiquitin-conjugating enzyme/RWD-like (IPR016135),Ubiquitin-conjugating enzyme E2 (IPR000608),Ubiquitin-conjugating enzyme%2C active site (IPR023313);NIAS_FLcDNA=J033117D10;Manual Curation=December 7%2C 2016;Literature_PMID=25001222,25902049;Oryzabase=18115;Expression=AK122067;TENOR=Os01t0673600-01;KEGG=Os01t0673600-01 (EC:6.3.2.19)
Chr01	irgsp1_rep	five_prime_UTR	27671461	27671611	.	-	.	Parent=Os01t0673600-01
Chr01	irgsp1_rep	CDS	27671425	27671460	.	-	0	Parent=Os01t0673600-01
Chr01	irgsp1_rep	CDS	27671243	27671270	.	-	0	Parent=Os01t0673600-01
Chr01	irgsp1_rep	CDS	27671042	27671128	.	-	2	Parent=Os01t0673600-01
Chr01	irgsp1_rep	CDS	27670333	27670391	.	-	2	Parent=Os01t0673600-01
Chr01	irgsp1_rep	CDS	27669502	27669543	.	-	0	Parent=Os01t0673600-01
Chr01	irgsp1_rep	CDS	27669349	27669422	.	-	0	Parent=Os01t0673600-01
Chr01	irgsp1_rep	CDS	27668993	27669090	.	-	1	Parent=Os01t0673600-01
Chr01	irgsp1_rep	CDS	27668864	27668901	.	-	2	Parent=Os01t0673600-01
Chr01	irgsp1_rep	three_prime_UTR	27668585	27668863	.	-	.	Parent=Os01t0673600-01
Chr01	irgsp1_rep	mRNA	27668621	27669424	.	+	.	ID=Os01t0673650-00;Name=Os01t0673650-00;Locus_id=Os01g0673650;Note=Non-protein coding transcript.;Transcript_evidence=BT016196 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0673650-00
Chr01	irgsp1_rep	exon	27668621	27668888	.	+	.	Parent=Os01t0673650-00
Chr01	irgsp1_rep	exon	27668982	27669079	.	+	.	Parent=Os01t0673650-00
Chr01	irgsp1_rep	exon	27669333	27669424	.	+	.	Parent=Os01t0673650-00
Chr01	irgsp1_rep	mRNA	27676501	27681662	.	+	.	ID=Os01t0673700-00;Name=Os01t0673700-00;Locus_id=Os01g0673700;Oryzabase Gene Symbol Synonym(s)=OsDof5%2C Dof5%2C OsDof-5;Oryzabase Gene Name Synonym(s)=Dof zinc factor 5%2C Dof transcription factor 5;Note=Similar to Dof3 (Fragment).;Transcript_evidence=AK376848 (DDBJ);ORF_evidence=Q0GLE9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C Dof-type (IPR003851);Oryzabase=20263;TENOR=Os01t0673700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	27676501	27677024	.	+	0	Parent=Os01t0673700-00
Chr01	irgsp1_rep	CDS	27681197	27681662	.	+	1	Parent=Os01t0673700-00
Chr01	irgsp1_rep	mRNA	27677194	27681560	.	-	.	ID=Os01t0673800-01;Name=Os01t0673800-01;Locus_id=Os01g0673800;Note=Similar to ATP synthase protein I -related.;Transcript_evidence=AK072055 (DDBJ%2C Best hit);ORF_evidence=NP_565711.1 (RefSeq);NIAS_FLcDNA=J013110J02;Expression=AK072055;TENOR=Os01t0673800-01;KEGG=Os01t0673800-01
Chr01	irgsp1_rep	five_prime_UTR	27681463	27681560	.	-	.	Parent=Os01t0673800-01
Chr01	irgsp1_rep	CDS	27681103	27681462	.	-	0	Parent=Os01t0673800-01
Chr01	irgsp1_rep	CDS	27680855	27680913	.	-	0	Parent=Os01t0673800-01
Chr01	irgsp1_rep	CDS	27680669	27680768	.	-	1	Parent=Os01t0673800-01
Chr01	irgsp1_rep	CDS	27680476	27680574	.	-	0	Parent=Os01t0673800-01
Chr01	irgsp1_rep	CDS	27680233	27680319	.	-	0	Parent=Os01t0673800-01
Chr01	irgsp1_rep	CDS	27679987	27680078	.	-	0	Parent=Os01t0673800-01
Chr01	irgsp1_rep	CDS	27679690	27679782	.	-	1	Parent=Os01t0673800-01
Chr01	irgsp1_rep	CDS	27679181	27679249	.	-	1	Parent=Os01t0673800-01
Chr01	irgsp1_rep	CDS	27678943	27679078	.	-	1	Parent=Os01t0673800-01
Chr01	irgsp1_rep	three_prime_UTR	27678877	27678942	.	-	.	Parent=Os01t0673800-01
Chr01	irgsp1_rep	three_prime_UTR	27678387	27678458	.	-	.	Parent=Os01t0673800-01
Chr01	irgsp1_rep	three_prime_UTR	27677194	27677638	.	-	.	Parent=Os01t0673800-01
Chr01	irgsp1_rep	mRNA	27677194	27681560	.	-	.	ID=Os01t0673800-02;Name=Os01t0673800-02;Locus_id=Os01g0673800;Note=Similar to ATP synthase protein I -related.;Transcript_evidence=AK099934 (DDBJ%2C Best hit);ORF_evidence=NP_565711.1 (RefSeq);NIAS_FLcDNA=J013119G23;Expression=AK099934;TENOR=Os01t0673800-02;KEGG=Os01t0673800-02
Chr01	irgsp1_rep	five_prime_UTR	27681463	27681560	.	-	.	Parent=Os01t0673800-02
Chr01	irgsp1_rep	CDS	27681103	27681462	.	-	0	Parent=Os01t0673800-02
Chr01	irgsp1_rep	CDS	27680855	27680913	.	-	0	Parent=Os01t0673800-02
Chr01	irgsp1_rep	CDS	27680669	27680768	.	-	1	Parent=Os01t0673800-02
Chr01	irgsp1_rep	CDS	27680476	27680574	.	-	0	Parent=Os01t0673800-02
Chr01	irgsp1_rep	CDS	27680233	27680319	.	-	0	Parent=Os01t0673800-02
Chr01	irgsp1_rep	CDS	27679987	27680078	.	-	0	Parent=Os01t0673800-02
Chr01	irgsp1_rep	CDS	27679690	27679771	.	-	1	Parent=Os01t0673800-02
Chr01	irgsp1_rep	CDS	27679193	27679249	.	-	0	Parent=Os01t0673800-02
Chr01	irgsp1_rep	three_prime_UTR	27679181	27679192	.	-	.	Parent=Os01t0673800-02
Chr01	irgsp1_rep	three_prime_UTR	27678916	27679078	.	-	.	Parent=Os01t0673800-02
Chr01	irgsp1_rep	three_prime_UTR	27678324	27678458	.	-	.	Parent=Os01t0673800-02
Chr01	irgsp1_rep	three_prime_UTR	27677504	27677638	.	-	.	Parent=Os01t0673800-02
Chr01	irgsp1_rep	three_prime_UTR	27677194	27677441	.	-	.	Parent=Os01t0673800-02
Chr01	irgsp1_rep	mRNA	27678161	27680016	.	-	.	ID=Os01t0673800-03;Name=Os01t0673800-03;Locus_id=Os01g0673800;Note=Similar to predicted protein.;Transcript_evidence=AK120641 (DDBJ%2C Best hit);ORF_evidence=NP_565711.1 (RefSeq);NIAS_FLcDNA=J013154E16;Expression=AK120641;TENOR=Os01t0673800-03;KEGG=Os01t0673800-03
Chr01	irgsp1_rep	five_prime_UTR	27680016	27680016	.	-	.	Parent=Os01t0673800-03
Chr01	irgsp1_rep	CDS	27679987	27680015	.	-	0	Parent=Os01t0673800-03
Chr01	irgsp1_rep	CDS	27679690	27679782	.	-	1	Parent=Os01t0673800-03
Chr01	irgsp1_rep	CDS	27679181	27679249	.	-	1	Parent=Os01t0673800-03
Chr01	irgsp1_rep	CDS	27678943	27679078	.	-	1	Parent=Os01t0673800-03
Chr01	irgsp1_rep	three_prime_UTR	27678877	27678942	.	-	.	Parent=Os01t0673800-03
Chr01	irgsp1_rep	three_prime_UTR	27678161	27678458	.	-	.	Parent=Os01t0673800-03
Chr01	irgsp1_rep	mRNA	27681801	27682550	.	-	.	ID=Os01t0673900-01;Name=Os01t0673900-01;Locus_id=Os01g0673900;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=AK063791 (DDBJ%2C Best hit);ORF_evidence=F2E206 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=001-121-E06;TENOR=Os01t0673900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	27682463	27682550	.	-	.	Parent=Os01t0673900-01
Chr01	irgsp1_rep	CDS	27682265	27682462	.	-	0	Parent=Os01t0673900-01
Chr01	irgsp1_rep	CDS	27682105	27682167	.	-	0	Parent=Os01t0673900-01
Chr01	irgsp1_rep	three_prime_UTR	27681801	27682104	.	-	.	Parent=Os01t0673900-01
Chr01	irgsp1_rep	mRNA	27690597	27691968	.	-	.	ID=Os01t0674000-01;Name=Os01t0674000-01;Locus_id=Os01g0674000;CGSNL Gene Symbol=MSL05;CGSNL Gene Name=MYB/SANT-LIKE 5;Oryzabase Gene Symbol Synonym(s)=OsMSL05%2C MSL5%2C DLN18%2C OsDLN18;Oryzabase Gene Name Synonym(s)=Myb/SANT-LIKE 5%2C DLN repressor 18%2C DLN motif protein 18;Note=Homeodomain-like containing protein.;Transcript_evidence=AK099396 (DDBJ%2C Best hit);ORF_evidence=NP_001149030.1 (RefSeq);GO=Molecular Function: DNA binding (GO:0003677);InterPro=SANT domain%2C DNA binding (IPR001005);NIAS_FLcDNA=J013000M14;Oryzabase=22948;Expression=AK099396;TENOR=Os01t0674000-01;KEGG=Os01t0674000-01
Chr01	irgsp1_rep	five_prime_UTR	27691834	27691968	.	-	.	Parent=Os01t0674000-01
Chr01	irgsp1_rep	CDS	27690835	27691833	.	-	0	Parent=Os01t0674000-01
Chr01	irgsp1_rep	three_prime_UTR	27690597	27690834	.	-	.	Parent=Os01t0674000-01
Chr01	irgsp1_rep	mRNA	27696186	27702331	.	-	.	ID=Os01t0674100-01;Name=Os01t0674100-01;Locus_id=Os01g0674100;Note=Similar to ATP binding protein.;Transcript_evidence=AK070808 (DDBJ%2C Best hit);ORF_evidence=NP_001152076.1 (RefSeq);NIAS_FLcDNA=J023072E18;TENOR=Os01t0674100-01
Chr01	irgsp1_rep	five_prime_UTR	27701738	27702331	.	-	.	Parent=Os01t0674100-01
Chr01	irgsp1_rep	five_prime_UTR	27700372	27700489	.	-	.	Parent=Os01t0674100-01
Chr01	irgsp1_rep	CDS	27700132	27700371	.	-	0	Parent=Os01t0674100-01
Chr01	irgsp1_rep	CDS	27699314	27699517	.	-	0	Parent=Os01t0674100-01
Chr01	irgsp1_rep	CDS	27698941	27699129	.	-	0	Parent=Os01t0674100-01
Chr01	irgsp1_rep	CDS	27698605	27698864	.	-	0	Parent=Os01t0674100-01
Chr01	irgsp1_rep	CDS	27697660	27697743	.	-	1	Parent=Os01t0674100-01
Chr01	irgsp1_rep	CDS	27697446	27697538	.	-	1	Parent=Os01t0674100-01
Chr01	irgsp1_rep	CDS	27696967	27697062	.	-	1	Parent=Os01t0674100-01
Chr01	irgsp1_rep	CDS	27696186	27696223	.	-	1	Parent=Os01t0674100-01
Chr01	irgsp1_rep	mRNA	27692923	27702310	.	-	.	ID=Os01t0674100-02;Name=Os01t0674100-02;Locus_id=Os01g0674100;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK102209 (DDBJ%2C Best hit);ORF_evidence=NP_001152076.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J033087I01;Expression=AK102209;TENOR=Os01t0674100-02;KEGG=Os01t0674100-02
Chr01	irgsp1_rep	five_prime_UTR	27701738	27702310	.	-	.	Parent=Os01t0674100-02
Chr01	irgsp1_rep	five_prime_UTR	27700372	27700489	.	-	.	Parent=Os01t0674100-02
Chr01	irgsp1_rep	CDS	27700132	27700371	.	-	0	Parent=Os01t0674100-02
Chr01	irgsp1_rep	CDS	27699314	27699517	.	-	0	Parent=Os01t0674100-02
Chr01	irgsp1_rep	CDS	27698941	27699129	.	-	0	Parent=Os01t0674100-02
Chr01	irgsp1_rep	CDS	27698605	27698864	.	-	0	Parent=Os01t0674100-02
Chr01	irgsp1_rep	CDS	27697660	27697743	.	-	1	Parent=Os01t0674100-02
Chr01	irgsp1_rep	CDS	27697446	27697538	.	-	1	Parent=Os01t0674100-02
Chr01	irgsp1_rep	CDS	27696967	27697062	.	-	1	Parent=Os01t0674100-02
Chr01	irgsp1_rep	CDS	27696128	27696223	.	-	1	Parent=Os01t0674100-02
Chr01	irgsp1_rep	CDS	27695788	27695908	.	-	1	Parent=Os01t0674100-02
Chr01	irgsp1_rep	CDS	27695405	27695682	.	-	0	Parent=Os01t0674100-02
Chr01	irgsp1_rep	CDS	27694611	27694733	.	-	1	Parent=Os01t0674100-02
Chr01	irgsp1_rep	CDS	27694497	27694516	.	-	1	Parent=Os01t0674100-02
Chr01	irgsp1_rep	CDS	27694231	27694387	.	-	2	Parent=Os01t0674100-02
Chr01	irgsp1_rep	CDS	27693769	27694057	.	-	1	Parent=Os01t0674100-02
Chr01	irgsp1_rep	CDS	27693473	27693545	.	-	0	Parent=Os01t0674100-02
Chr01	irgsp1_rep	CDS	27693267	27693349	.	-	2	Parent=Os01t0674100-02
Chr01	irgsp1_rep	three_prime_UTR	27692923	27693266	.	-	.	Parent=Os01t0674100-02
Chr01	irgsp1_rep	mRNA	27692921	27697012	.	-	.	ID=Os01t0674100-03;Name=Os01t0674100-03;Locus_id=Os01g0674100;Note=Similar to ATP binding protein.;Transcript_evidence=AK111983 (DDBJ%2C Best hit);ORF_evidence=NP_001152076.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-012-H11;Expression=AK111983;TENOR=Os01t0674100-03;KEGG=Os01t0674100-03
Chr01	irgsp1_rep	five_prime_UTR	27697011	27697012	.	-	.	Parent=Os01t0674100-03
Chr01	irgsp1_rep	CDS	27696967	27697010	.	-	0	Parent=Os01t0674100-03
Chr01	irgsp1_rep	CDS	27696128	27696223	.	-	1	Parent=Os01t0674100-03
Chr01	irgsp1_rep	CDS	27695788	27695908	.	-	1	Parent=Os01t0674100-03
Chr01	irgsp1_rep	CDS	27695405	27695682	.	-	0	Parent=Os01t0674100-03
Chr01	irgsp1_rep	CDS	27694611	27694733	.	-	1	Parent=Os01t0674100-03
Chr01	irgsp1_rep	CDS	27694497	27694516	.	-	1	Parent=Os01t0674100-03
Chr01	irgsp1_rep	CDS	27694231	27694387	.	-	2	Parent=Os01t0674100-03
Chr01	irgsp1_rep	CDS	27693769	27694057	.	-	1	Parent=Os01t0674100-03
Chr01	irgsp1_rep	CDS	27693473	27693545	.	-	0	Parent=Os01t0674100-03
Chr01	irgsp1_rep	CDS	27693267	27693349	.	-	2	Parent=Os01t0674100-03
Chr01	irgsp1_rep	three_prime_UTR	27692921	27693266	.	-	.	Parent=Os01t0674100-03
Chr01	irgsp1_rep	mRNA	27693152	27695915	.	+	.	ID=Os01t0674125-00;Name=Os01t0674125-00;Locus_id=Os01g0674125;Note=Hypothetical gene.;Transcript_evidence=BT017362 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0674125-00;KEGG=Os01t0674125-00
Chr01	irgsp1_rep	five_prime_UTR	27693152	27693349	.	+	.	Parent=Os01t0674125-00
Chr01	irgsp1_rep	five_prime_UTR	27693473	27693534	.	+	.	Parent=Os01t0674125-00
Chr01	irgsp1_rep	five_prime_UTR	27693754	27694064	.	+	.	Parent=Os01t0674125-00
Chr01	irgsp1_rep	five_prime_UTR	27694237	27694405	.	+	.	Parent=Os01t0674125-00
Chr01	irgsp1_rep	five_prime_UTR	27694611	27694643	.	+	.	Parent=Os01t0674125-00
Chr01	irgsp1_rep	CDS	27694644	27694733	.	+	0	Parent=Os01t0674125-00
Chr01	irgsp1_rep	CDS	27695405	27695590	.	+	0	Parent=Os01t0674125-00
Chr01	irgsp1_rep	three_prime_UTR	27695591	27695674	.	+	.	Parent=Os01t0674125-00
Chr01	irgsp1_rep	three_prime_UTR	27695780	27695915	.	+	.	Parent=Os01t0674125-00
Chr01	irgsp1_rep	mRNA	27704013	27705072	.	+	.	ID=Os01t0674150-01;Name=Os01t0674150-01;Locus_id=Os01g0674150;Note=Conserved hypothetical protein.;Transcript_evidence=AK241731 (DDBJ%2C Best hit);ORF_evidence=NP_001172499.1 (RefSeq);NIAS_FLcDNA=J065199N24;TENOR=Os01t0674150-01;KEGG=Os01t0674150-01
Chr01	irgsp1_rep	five_prime_UTR	27704013	27704332	.	+	.	Parent=Os01t0674150-01
Chr01	irgsp1_rep	CDS	27704333	27704412	.	+	0	Parent=Os01t0674150-01
Chr01	irgsp1_rep	CDS	27704490	27704655	.	+	1	Parent=Os01t0674150-01
Chr01	irgsp1_rep	three_prime_UTR	27704656	27705072	.	+	.	Parent=Os01t0674150-01
Chr01	irgsp1_rep	mRNA	27714540	27715226	.	+	.	ID=Os01t0674400-00;Name=Os01t0674400-00;Locus_id=Os01g0674400;Note=Hypothetical conserved gene.;Transcript_evidence=CT834954 (DDBJ%2C Best hit);ORF_evidence=NP_001172501.1 (RefSeq);TENOR=Os01t0674400-00;KEGG=Os01t0674400-00
Chr01	irgsp1_rep	five_prime_UTR	27714540	27714759	.	+	.	Parent=Os01t0674400-00
Chr01	irgsp1_rep	CDS	27714760	27714914	.	+	0	Parent=Os01t0674400-00
Chr01	irgsp1_rep	CDS	27715034	27715145	.	+	1	Parent=Os01t0674400-00
Chr01	irgsp1_rep	three_prime_UTR	27715146	27715226	.	+	.	Parent=Os01t0674400-00
Chr01	irgsp1_rep	mRNA	27714617	27715319	.	-	.	ID=Os01t0674450-01;Name=Os01t0674450-01;Locus_id=Os01g0674450;Note=Non-protein coding transcript.;Transcript_evidence=AK241551 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065177A11;TENOR=Os01t0674450-01
Chr01	irgsp1_rep	exon	27715034	27715319	.	-	.	Parent=Os01t0674450-01
Chr01	irgsp1_rep	exon	27714617	27714914	.	-	.	Parent=Os01t0674450-01
Chr01	irgsp1_rep	mRNA	27716240	27721217	.	-	.	ID=Os01t0674500-01;Name=Os01t0674500-01;Locus_id=Os01g0674500;Oryzabase Gene Symbol Synonym(s)=OsTLP9%2C OsTLP9a%2C OsTLP9b%2C OsTLP9c%2C OsTLP1%2C OsFbox034%2C OsFbox34%2C Os_F0675;Oryzabase Gene Name Synonym(s)=tubby-like protein 9%2C tubby-like protein 1%2C F-box protein 34;Note=Similar to cDNA clone:J023048A08%2C full insert sequence.;Transcript_evidence=AK070401 (DDBJ%2C Best hit);ORF_evidence=Q5QM27 (UniProt);InterPro=Tubby%2C C-terminal (IPR000007),Tubby%2C C-terminal%2C conserved site (IPR018066);NIAS_FLcDNA=J023048A08;Oryzabase=14711;TENOR=Os01t0674500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	27721106	27721217	.	-	.	Parent=Os01t0674500-01
Chr01	irgsp1_rep	CDS	27720812	27721105	.	-	0	Parent=Os01t0674500-01
Chr01	irgsp1_rep	CDS	27719524	27719611	.	-	0	Parent=Os01t0674500-01
Chr01	irgsp1_rep	CDS	27718255	27718384	.	-	2	Parent=Os01t0674500-01
Chr01	irgsp1_rep	CDS	27716528	27717086	.	-	1	Parent=Os01t0674500-01
Chr01	irgsp1_rep	three_prime_UTR	27716240	27716527	.	-	.	Parent=Os01t0674500-01
Chr01	irgsp1_rep	mRNA	27716285	27721167	.	-	.	ID=Os01t0674500-02;Name=Os01t0674500-02;Locus_id=Os01g0674500;Oryzabase Gene Symbol Synonym(s)=OsTLP9%2C OsTLP9a%2C OsTLP9b%2C OsTLP9c%2C OsTLP1%2C OsFbox034%2C OsFbox34%2C Os_F0675;Oryzabase Gene Name Synonym(s)=tubby-like protein 9%2C tubby-like protein 1%2C F-box protein 34;Note=Similar to cDNA clone:J023048A08%2C full insert sequence.;Transcript_evidence=AK099104 (DDBJ%2C Best hit);ORF_evidence=B7EHT3 (UniProt);InterPro=Tubby%2C C-terminal (IPR000007),Tubby%2C C-terminal%2C conserved site (IPR018066);NIAS_FLcDNA=J023033E14;Oryzabase=14711;Expression=AK099104;TENOR=Os01t0674500-02;KEGG=Os01t0674500-02
Chr01	irgsp1_rep	five_prime_UTR	27721106	27721167	.	-	.	Parent=Os01t0674500-02
Chr01	irgsp1_rep	CDS	27720812	27721105	.	-	0	Parent=Os01t0674500-02
Chr01	irgsp1_rep	CDS	27719524	27719611	.	-	0	Parent=Os01t0674500-02
Chr01	irgsp1_rep	CDS	27718255	27718384	.	-	2	Parent=Os01t0674500-02
Chr01	irgsp1_rep	CDS	27716528	27717086	.	-	1	Parent=Os01t0674500-02
Chr01	irgsp1_rep	three_prime_UTR	27716285	27716527	.	-	.	Parent=Os01t0674500-02
Chr01	irgsp1_rep	mRNA	27716240	27717363	.	-	.	ID=Os01t0674500-03;Name=Os01t0674500-03;Locus_id=Os01g0674500;Oryzabase Gene Symbol Synonym(s)=OsTLP9%2C OsTLP9a%2C OsTLP9b%2C OsTLP9c%2C OsTLP1%2C OsFbox034%2C OsFbox34%2C Os_F0675;Oryzabase Gene Name Synonym(s)=tubby-like protein 9%2C tubby-like protein 1%2C F-box protein 34;Note=Similar to cDNA clone:J023048A08%2C full insert sequence.;Transcript_evidence=AK072815 (DDBJ%2C Best hit);ORF_evidence=B7EHT3 (UniProt);InterPro=Tubby%2C C-terminal (IPR000007),Tubby%2C C-terminal%2C conserved site (IPR018066);NIAS_FLcDNA=J023142B02;Oryzabase=14711;Expression=AK072815;TENOR=Os01t0674500-03;KEGG=Os01t0674500-03
Chr01	irgsp1_rep	five_prime_UTR	27717122	27717363	.	-	.	Parent=Os01t0674500-03
Chr01	irgsp1_rep	CDS	27716528	27717121	.	-	0	Parent=Os01t0674500-03
Chr01	irgsp1_rep	three_prime_UTR	27716240	27716527	.	-	.	Parent=Os01t0674500-03
Chr01	irgsp1_rep	mRNA	27725579	27731480	.	+	.	ID=Os01t0674700-00;Name=Os01t0674700-00;Locus_id=Os01g0674700;Note=Similar to EMB2279 (EMBRYO DEFECTIVE 2279).;Transcript_evidence=AK376580 (DDBJ);ORF_evidence=B9EYK3 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os01t0674700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	27725579	27725581	.	+	.	Parent=Os01t0674700-00
Chr01	irgsp1_rep	CDS	27725582	27726930	.	+	0	Parent=Os01t0674700-00
Chr01	irgsp1_rep	CDS	27727725	27727916	.	+	1	Parent=Os01t0674700-00
Chr01	irgsp1_rep	CDS	27728230	27728311	.	+	1	Parent=Os01t0674700-00
Chr01	irgsp1_rep	CDS	27728393	27728581	.	+	0	Parent=Os01t0674700-00
Chr01	irgsp1_rep	CDS	27728706	27728819	.	+	0	Parent=Os01t0674700-00
Chr01	irgsp1_rep	CDS	27729212	27729302	.	+	0	Parent=Os01t0674700-00
Chr01	irgsp1_rep	CDS	27729374	27729531	.	+	2	Parent=Os01t0674700-00
Chr01	irgsp1_rep	CDS	27730143	27730568	.	+	0	Parent=Os01t0674700-00
Chr01	irgsp1_rep	CDS	27731097	27731480	.	+	0	Parent=Os01t0674700-00
Chr01	irgsp1_rep	mRNA	27737142	27739719	.	+	.	ID=Os01t0674800-01;Name=Os01t0674800-01;Locus_id=Os01g0674800;Note=Serine/threonine-specific protein kinase NPK15-like.;Transcript_evidence=AK059169 (DDBJ%2C Best hit);ORF_evidence=NP_193599.3 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=001-023-E07;Expression=AK059169;TENOR=Os01t0674800-01;KEGG=Os01t0674800-01
Chr01	irgsp1_rep	five_prime_UTR	27737142	27737196	.	+	.	Parent=Os01t0674800-01
Chr01	irgsp1_rep	CDS	27737197	27737377	.	+	0	Parent=Os01t0674800-01
Chr01	irgsp1_rep	CDS	27737918	27738108	.	+	2	Parent=Os01t0674800-01
Chr01	irgsp1_rep	CDS	27738240	27738372	.	+	0	Parent=Os01t0674800-01
Chr01	irgsp1_rep	CDS	27738457	27738611	.	+	2	Parent=Os01t0674800-01
Chr01	irgsp1_rep	CDS	27738930	27739121	.	+	0	Parent=Os01t0674800-01
Chr01	irgsp1_rep	CDS	27739232	27739492	.	+	0	Parent=Os01t0674800-01
Chr01	irgsp1_rep	three_prime_UTR	27739493	27739719	.	+	.	Parent=Os01t0674800-01
Chr01	irgsp1_rep	mRNA	27742228	27745141	.	+	.	ID=Os01t0675000-01;Name=Os01t0675000-01;Locus_id=Os01g0675000;RAP-DB Gene Symbol Synonym(s)=OsRopGEF6;RAP-DB Gene Name Synonym(s)=Guanine nucleotide exchange factor for ROP 6;CGSNL Gene Symbol=ROPGEF6;CGSNL Gene Name=ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 6;Oryzabase Gene Symbol Synonym(s)=Os RopGEF6%2C OsRopGEF6%2C RopGEF6;Oryzabase Gene Name Synonym(s)=GEF for ROP 6%2C guanine nucleotide exchange factor for Rop 6%2C Rop-specific GEF6%2C Rop-specific guanine nucleotide exchange factor 6;Note=Guanine nucleotide exchange factor for Rho-type GTPase of plant (ROP/Rac)%2C Pollen germination%2C Pollen tube growth;Transcript_evidence=AK100701;ORF_evidence=Q0JKH0;GO=Molecular Function: Rho guanyl-nucleotide exchange factor activity (GO:0005089);InterPro=PRONE domain (IPR005512);NIAS_FLcDNA=J023114N21;Manual Curation=March 9%2C 2020;Literature_PMID=32131749;Oryzabase=11448;Expression=AK100701;TENOR=Os01t0675000-01;KEGG=Os01t0675000-01;Subcellular location=plasma membrane (GO:0005886)
Chr01	irgsp1_rep	five_prime_UTR	27742228	27742622	.	+	.	Parent=Os01t0675000-01
Chr01	irgsp1_rep	CDS	27742623	27742980	.	+	0	Parent=Os01t0675000-01
Chr01	irgsp1_rep	CDS	27743079	27743195	.	+	2	Parent=Os01t0675000-01
Chr01	irgsp1_rep	CDS	27743301	27743455	.	+	2	Parent=Os01t0675000-01
Chr01	irgsp1_rep	CDS	27743538	27743612	.	+	0	Parent=Os01t0675000-01
Chr01	irgsp1_rep	CDS	27743712	27743984	.	+	0	Parent=Os01t0675000-01
Chr01	irgsp1_rep	CDS	27744173	27744484	.	+	0	Parent=Os01t0675000-01
Chr01	irgsp1_rep	CDS	27744586	27744960	.	+	0	Parent=Os01t0675000-01
Chr01	irgsp1_rep	three_prime_UTR	27744961	27745141	.	+	.	Parent=Os01t0675000-01
Chr01	irgsp1_rep	mRNA	27745830	27747887	.	-	.	ID=Os01t0675100-01;Name=Os01t0675100-01;Locus_id=Os01g0675100;CGSNL Gene Symbol=PRXIIC;CGSNL Gene Name=TYPE-II PEROXIREDOXIN C;Oryzabase Gene Symbol Synonym(s)=OsPrxII C%2C PrxII C%2C OsPrxIIC%2C PrxIIC;Oryzabase Gene Name Synonym(s)=Type-II Prx C%2C Type-II peroxiredoxin C;Note=Similar to peroxiredoxin.;Transcript_evidence=AK058509 (DDBJ%2C Best hit);ORF_evidence=Q9FR35 (UniProt);GO=Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Thioredoxin-like fold (IPR012336),Redoxin (IPR013740);NIAS_FLcDNA=001-016-G06;Oryzabase=21748;Expression=AK058509;TENOR=Os01t0675100-01;KEGG=Os01t0675100-01 (EC:1.11.1.15)
Chr01	irgsp1_rep	five_prime_UTR	27747791	27747887	.	-	.	Parent=Os01t0675100-01
Chr01	irgsp1_rep	CDS	27747636	27747790	.	-	0	Parent=Os01t0675100-01
Chr01	irgsp1_rep	CDS	27746552	27746631	.	-	1	Parent=Os01t0675100-01
Chr01	irgsp1_rep	CDS	27746014	27746267	.	-	2	Parent=Os01t0675100-01
Chr01	irgsp1_rep	three_prime_UTR	27745830	27746013	.	-	.	Parent=Os01t0675100-01
Chr01	irgsp1_rep	mRNA	27754650	27755765	.	-	.	ID=Os01t0675400-00;Name=Os01t0675400-00;Locus_id=Os01g0675400;Note=DNA-binding pseudobarrel domain domain containing protein.;Transcript_evidence=EU944481 (DDBJ);ORF_evidence=Q5QM34 (UniProt);InterPro=DNA-binding pseudobarrel domain (IPR015300);TENOR=Os01t0675400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	27755199	27755765	.	-	0	Parent=Os01t0675400-00
Chr01	irgsp1_rep	CDS	27754650	27754985	.	-	0	Parent=Os01t0675400-00
Chr01	irgsp1_rep	mRNA	27757806	27761694	.	-	.	ID=Os01t0675500-01;Name=Os01t0675500-01;Locus_id=Os01g0675500;Oryzabase Gene Symbol Synonym(s)=OsIRX9L%2C OsGT43F/OsIRX9L%2C OsGT43F;Oryzabase Gene Name Synonym(s)=IRREGULAR XYLEM 9L%2C glycosyltransferase family GT43 member F;Note=Similar to Glycoprotein-specific UDP-glucuronyltransferase-like protein.;Transcript_evidence=AK069674 (DDBJ%2C Best hit);ORF_evidence=NP_001151473.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020),Molecular Function: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity (GO:0015018);InterPro=Glycosyl transferase%2C family 43 (IPR005027);NIAS_FLcDNA=J023027J07;Oryzabase=11759;Expression=AK069674;TENOR=Os01t0675500-01;KEGG=Os01t0675500-01
Chr01	irgsp1_rep	five_prime_UTR	27761412	27761694	.	-	.	Parent=Os01t0675500-01
Chr01	irgsp1_rep	five_prime_UTR	27760793	27761042	.	-	.	Parent=Os01t0675500-01
Chr01	irgsp1_rep	CDS	27759873	27760792	.	-	0	Parent=Os01t0675500-01
Chr01	irgsp1_rep	CDS	27758771	27759020	.	-	1	Parent=Os01t0675500-01
Chr01	irgsp1_rep	CDS	27758172	27758342	.	-	0	Parent=Os01t0675500-01
Chr01	irgsp1_rep	three_prime_UTR	27757806	27758171	.	-	.	Parent=Os01t0675500-01
Chr01	irgsp1_rep	mRNA	27757765	27760333	.	-	.	ID=Os01t0675500-02;Name=Os01t0675500-02;Locus_id=Os01g0675500;Oryzabase Gene Symbol Synonym(s)=OsIRX9L%2C OsGT43F/OsIRX9L%2C OsGT43F;Oryzabase Gene Name Synonym(s)=IRREGULAR XYLEM 9L%2C glycosyltransferase family GT43 member F;Note=Similar to galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1.;Transcript_evidence=AK062112 (DDBJ%2C Best hit);ORF_evidence=NP_001151473.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020),Molecular Function: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity (GO:0015018);InterPro=Glycosyl transferase%2C family 43 (IPR005027);NIAS_FLcDNA=001-045-B10;Oryzabase=11759;Expression=AK062112;TENOR=Os01t0675500-02;KEGG=Os01t0675500-02
Chr01	irgsp1_rep	CDS	27759873	27760333	.	-	0	Parent=Os01t0675500-02
Chr01	irgsp1_rep	CDS	27758771	27759020	.	-	1	Parent=Os01t0675500-02
Chr01	irgsp1_rep	CDS	27758547	27758603	.	-	0	Parent=Os01t0675500-02
Chr01	irgsp1_rep	three_prime_UTR	27758457	27758546	.	-	.	Parent=Os01t0675500-02
Chr01	irgsp1_rep	three_prime_UTR	27757765	27758342	.	-	.	Parent=Os01t0675500-02
Chr01	irgsp1_rep	mRNA	27777432	27780995	.	+	.	ID=Os01t0675700-01;Name=Os01t0675700-01;Locus_id=Os01g0675700;CGSNL Gene Symbol=IAA5;Oryzabase Gene Symbol Synonym(s)=OsIAA5;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 5;Note=Similar to Auxin-responsive protein IAA14 (Indoleacetic acid-induced protein 14) (SOLITARY-ROOT protein).;Transcript_evidence=AK106121 (DDBJ%2C Best hit);ORF_evidence=Q0JKG7 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Aux/IAA-ARF-dimerisation (IPR011525);NIAS_FLcDNA=001-207-E11;Oryzabase=10896;Expression=AK106121;TENOR=Os01t0675700-01;KEGG=Os01t0675700-01
Chr01	irgsp1_rep	five_prime_UTR	27777432	27777518	.	+	.	Parent=Os01t0675700-01
Chr01	irgsp1_rep	CDS	27777519	27777862	.	+	0	Parent=Os01t0675700-01
Chr01	irgsp1_rep	CDS	27777951	27778180	.	+	1	Parent=Os01t0675700-01
Chr01	irgsp1_rep	CDS	27778693	27778834	.	+	2	Parent=Os01t0675700-01
Chr01	irgsp1_rep	CDS	27780188	27780249	.	+	1	Parent=Os01t0675700-01
Chr01	irgsp1_rep	CDS	27780630	27780667	.	+	2	Parent=Os01t0675700-01
Chr01	irgsp1_rep	three_prime_UTR	27780668	27780995	.	+	.	Parent=Os01t0675700-01
Chr01	irgsp1_rep	mRNA	27777506	27780978	.	+	.	ID=Os01t0675700-02;Name=Os01t0675700-02;Locus_id=Os01g0675700;CGSNL Gene Symbol=IAA5;Oryzabase Gene Symbol Synonym(s)=OsIAA5;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 5;Note=Similar to Auxin-responsive protein IAA14 (Indoleacetic acid-induced protein 14) (SOLITARY-ROOT protein).;Transcript_evidence=AK061495 (DDBJ%2C Best hit),AK102396 (DDBJ%2C Best hit);ORF_evidence=Q0JKG7 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Aux/IAA-ARF-dimerisation (IPR011525);NIAS_FLcDNA=006-309-C06,J033092H03;Oryzabase=10896;TENOR=Os01t0675700-02
Chr01	irgsp1_rep	five_prime_UTR	27777506	27777518	.	+	.	Parent=Os01t0675700-02
Chr01	irgsp1_rep	CDS	27777519	27777862	.	+	0	Parent=Os01t0675700-02
Chr01	irgsp1_rep	CDS	27777951	27778180	.	+	1	Parent=Os01t0675700-02
Chr01	irgsp1_rep	CDS	27778693	27778834	.	+	2	Parent=Os01t0675700-02
Chr01	irgsp1_rep	CDS	27780188	27780249	.	+	1	Parent=Os01t0675700-02
Chr01	irgsp1_rep	CDS	27780630	27780667	.	+	2	Parent=Os01t0675700-02
Chr01	irgsp1_rep	three_prime_UTR	27780668	27780978	.	+	.	Parent=Os01t0675700-02
Chr01	irgsp1_rep	mRNA	27780948	27782265	.	-	.	ID=Os01t0675800-01;Name=Os01t0675800-01;Locus_id=Os01g0675800;RAP-DB Gene Symbol Synonym(s)=OsNAC14;CGSNL Gene Symbol=NAC14;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 14;Oryzabase Gene Symbol Synonym(s)=ONAC014%2C ONAC14%2C OsNAC14%2C NAC14;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 014%2C NAC domain-containing protein 14;Note="NAM%2C ATAF1-2%2C and CUC2 (NAC) transcription factor"%2C Drought tolerance;Transcript_evidence=AK105493;ORF_evidence=Q8LQP7;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=NAC domain superfamily (IPR036093),NAC domain (IPR003441);NIAS_FLcDNA=001-127-C03;Manual Curation=June 19%2C 2020;Literature_PMID=29593766;Oryzabase=11464;Expression=AK105493;TENOR=Os01t0675800-01;KEGG=Os01t0675800-01;Subcellular location=nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	27782161	27782265	.	-	.	Parent=Os01t0675800-01
Chr01	irgsp1_rep	CDS	27781288	27782160	.	-	0	Parent=Os01t0675800-01
Chr01	irgsp1_rep	three_prime_UTR	27780948	27781287	.	-	.	Parent=Os01t0675800-01
Chr01	irgsp1_rep	mRNA	27781759	27786211	.	+	.	ID=Os01t0675933-00;Name=Os01t0675933-00;Locus_id=Os01g0675933;Note=Conserved hypothetical protein.;Transcript_evidence=AK368709 (DDBJ);ORF_evidence=Q5ZBH3 (UniProt);TENOR=Os01t0675933-00
Chr01	irgsp1_rep	five_prime_UTR	27781759	27781959	.	+	.	Parent=Os01t0675933-00
Chr01	irgsp1_rep	five_prime_UTR	27785564	27785636	.	+	.	Parent=Os01t0675933-00
Chr01	irgsp1_rep	CDS	27785637	27785793	.	+	0	Parent=Os01t0675933-00
Chr01	irgsp1_rep	CDS	27786030	27786211	.	+	2	Parent=Os01t0675933-00
Chr01	irgsp1_rep	mRNA	27801413	27802410	.	+	.	ID=Os01t0676200-01;Name=Os01t0676200-01;Locus_id=Os01g0676200;Note=Conserved hypothetical protein.;Transcript_evidence=AK070436 (DDBJ%2C Best hit);ORF_evidence=A2WTQ7 (UniProt);NIAS_FLcDNA=J023054M21;Expression=AK070436;TENOR=Os01t0676200-01;KEGG=Os01t0676200-01
Chr01	irgsp1_rep	five_prime_UTR	27801413	27801482	.	+	.	Parent=Os01t0676200-01
Chr01	irgsp1_rep	CDS	27801483	27802208	.	+	0	Parent=Os01t0676200-01
Chr01	irgsp1_rep	three_prime_UTR	27802209	27802410	.	+	.	Parent=Os01t0676200-01
Chr01	irgsp1_rep	mRNA	27801444	27802403	.	+	.	ID=Os01t0676200-02;Name=Os01t0676200-02;Locus_id=Os01g0676200;Note=Conserved hypothetical protein.;Transcript_evidence=AK104204 (DDBJ%2C Best hit);ORF_evidence=A2WTQ7 (UniProt);NIAS_FLcDNA=006-304-E10;Expression=AK104204;TENOR=Os01t0676200-02;KEGG=Os01t0676200-02
Chr01	irgsp1_rep	five_prime_UTR	27801444	27801482	.	+	.	Parent=Os01t0676200-02
Chr01	irgsp1_rep	CDS	27801483	27802208	.	+	0	Parent=Os01t0676200-02
Chr01	irgsp1_rep	three_prime_UTR	27802209	27802403	.	+	.	Parent=Os01t0676200-02
Chr01	irgsp1_rep	mRNA	27826973	27828096	.	+	.	ID=Os01t0676800-01;Name=Os01t0676800-01;Locus_id=Os01g0676800;Note=Conserved hypothetical protein.;Transcript_evidence=AK241155 (DDBJ%2C Best hit);ORF_evidence=NP_001172502.1 (RefSeq);NIAS_FLcDNA=J065113O21;TENOR=Os01t0676800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	27826973	27827144	.	+	.	Parent=Os01t0676800-01
Chr01	irgsp1_rep	CDS	27827145	27827342	.	+	0	Parent=Os01t0676800-01
Chr01	irgsp1_rep	three_prime_UTR	27827343	27828096	.	+	.	Parent=Os01t0676800-01
Chr01	irgsp1_rep	mRNA	27833978	27835938	.	+	.	ID=Os01t0676900-01;Name=Os01t0676900-01;Locus_id=Os01g0676900;Oryzabase Gene Symbol Synonym(s)=OsSPEAR3%2C SPEAR3;Oryzabase Gene Name Synonym(s)="SPL-like%2C EAR-containing protein 3";Note=Hypothetical conserved gene.;Transcript_evidence=AK243469 (DDBJ%2C Best hit);ORF_evidence=A2WTQ9 (UniProt);NIAS_FLcDNA=J100072B11;Oryzabase=22331;TENOR=Os01t0676900-01;KEGG=Os01t0676900-01
Chr01	irgsp1_rep	five_prime_UTR	27833978	27834013	.	+	.	Parent=Os01t0676900-01
Chr01	irgsp1_rep	CDS	27834014	27834259	.	+	0	Parent=Os01t0676900-01
Chr01	irgsp1_rep	CDS	27835162	27835220	.	+	0	Parent=Os01t0676900-01
Chr01	irgsp1_rep	CDS	27835362	27835443	.	+	1	Parent=Os01t0676900-01
Chr01	irgsp1_rep	CDS	27835578	27835682	.	+	0	Parent=Os01t0676900-01
Chr01	irgsp1_rep	three_prime_UTR	27835683	27835938	.	+	.	Parent=Os01t0676900-01
Chr01	irgsp1_rep	mRNA	27840205	27842391	.	+	.	ID=Os01t0677000-01;Name=Os01t0677000-01;Locus_id=Os01g0677000;Oryzabase Gene Symbol Synonym(s)=OsSTA27;Note=Galactose oxidase/kelch%2C beta-propeller domain containing protein.;Transcript_evidence=AK106997 (DDBJ%2C Best hit);ORF_evidence=NP_001148082.1 (RefSeq);InterPro=Glyoxal oxidase%2C N-terminal (IPR009880),Galactose oxidase/kelch%2C beta-propeller (IPR011043),Immunoglobulin-like fold (IPR013783),Immunoglobulin E-set (IPR014756),Domain of unknown function DUF1929 (IPR015202),Galactose oxidase%2C beta-propeller (IPR015916);NIAS_FLcDNA=002-120-B11;Oryzabase=19336;Expression=AK106997;TENOR=Os01t0677000-01;KEGG=Os01t0677000-01
Chr01	irgsp1_rep	five_prime_UTR	27840205	27840238	.	+	.	Parent=Os01t0677000-01
Chr01	irgsp1_rep	CDS	27840239	27840784	.	+	0	Parent=Os01t0677000-01
Chr01	irgsp1_rep	CDS	27840886	27841046	.	+	0	Parent=Os01t0677000-01
Chr01	irgsp1_rep	CDS	27841142	27842309	.	+	1	Parent=Os01t0677000-01
Chr01	irgsp1_rep	three_prime_UTR	27842310	27842391	.	+	.	Parent=Os01t0677000-01
Chr01	irgsp1_rep	mRNA	27843400	27844850	.	-	.	ID=Os01t0677100-01;Name=Os01t0677100-01;Locus_id=Os01g0677100;Note=Conserved hypothetical protein.;Transcript_evidence=AK108595 (DDBJ%2C Best hit);ORF_evidence=B9EYK7 (UniProt);NIAS_FLcDNA=002-146-D12;TENOR=Os01t0677100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	27844789	27844850	.	-	.	Parent=Os01t0677100-01
Chr01	irgsp1_rep	CDS	27844333	27844788	.	-	0	Parent=Os01t0677100-01
Chr01	irgsp1_rep	three_prime_UTR	27843400	27844332	.	-	.	Parent=Os01t0677100-01
Chr01	irgsp1_rep	mRNA	27854298	27854925	.	+	.	ID=Os01t0677400-01;Name=Os01t0677400-01;Locus_id=Os01g0677400;Note=Conserved hypothetical protein.;Transcript_evidence=AK242454 (DDBJ%2C Best hit);ORF_evidence=NP_001172503.1 (RefSeq);NIAS_FLcDNA=J080097F20;TENOR=Os01t0677400-01;KEGG=Os01t0677400-01
Chr01	irgsp1_rep	five_prime_UTR	27854298	27854380	.	+	.	Parent=Os01t0677400-01
Chr01	irgsp1_rep	CDS	27854381	27854605	.	+	0	Parent=Os01t0677400-01
Chr01	irgsp1_rep	three_prime_UTR	27854606	27854925	.	+	.	Parent=Os01t0677400-01
Chr01	irgsp1_rep	mRNA	27860530	27862131	.	+	.	ID=Os01t0677500-00;Name=Os01t0677500-00;Locus_id=Os01g0677500;CGSNL Gene Symbol=UBC39;CGSNL Gene Name=UBIQUITIN-CONJUGATING ENZYME 39;Oryzabase Gene Symbol Synonym(s)=OsUBC39;Oryzabase Gene Name Synonym(s)=Ubiquitin-conjugating enzyme 39;Note=Similar to ubiquitin-conjugating enzyme E2.;Transcript_evidence=AK373665 (DDBJ);ORF_evidence=Q5RLI8 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135);Oryzabase=19572;TENOR=Os01t0677500-00;KEGG=Os01t0677500-00 (EC:6.3.2.19)
Chr01	irgsp1_rep	CDS	27860530	27860799	.	+	0	Parent=Os01t0677500-00
Chr01	irgsp1_rep	CDS	27860880	27860943	.	+	0	Parent=Os01t0677500-00
Chr01	irgsp1_rep	CDS	27861107	27861246	.	+	2	Parent=Os01t0677500-00
Chr01	irgsp1_rep	CDS	27861352	27861660	.	+	0	Parent=Os01t0677500-00
Chr01	irgsp1_rep	CDS	27861877	27862131	.	+	0	Parent=Os01t0677500-00
Chr01	irgsp1_rep	mRNA	27868771	27871845	.	+	.	ID=Os01t0677900-01;Name=Os01t0677900-01;Locus_id=Os01g0677900;Note=Protein of unknown function DUF2921 domain containing protein.;Transcript_evidence=AK068284 (DDBJ%2C Best hit);ORF_evidence=A2WTR6 (UniProt);InterPro=Protein of unknown function DUF2921 (IPR021319);NIAS_FLcDNA=J013146I22;Expression=AK068284;TENOR=Os01t0677900-01;KEGG=Os01t0677900-01
Chr01	irgsp1_rep	five_prime_UTR	27868771	27868789	.	+	.	Parent=Os01t0677900-01
Chr01	irgsp1_rep	CDS	27868790	27871087	.	+	0	Parent=Os01t0677900-01
Chr01	irgsp1_rep	three_prime_UTR	27871088	27871845	.	+	.	Parent=Os01t0677900-01
Chr01	irgsp1_rep	mRNA	27875639	27878341	.	+	.	ID=Os01t0678000-00;Name=Os01t0678000-00;Locus_id=Os01g0678000;Note=Protein of unknown function DUF2921 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001043855.1 (RefSeq);InterPro=Protein of unknown function DUF2921 (IPR021319);TENOR=Os01t0678000-00;KEGG=Os01t0678000-00
Chr01	irgsp1_rep	CDS	27875639	27878341	.	+	0	Parent=Os01t0678000-00
Chr01	irgsp1_rep	mRNA	27877175	27878304	.	-	.	ID=Os01t0678050-00;Name=Os01t0678050-00;Locus_id=Os01g0678050;Note=Hypothetical protein.;Transcript_evidence=EU958107 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0678050-00
Chr01	irgsp1_rep	five_prime_UTR	27877591	27878304	.	-	.	Parent=Os01t0678050-00
Chr01	irgsp1_rep	CDS	27877207	27877590	.	-	0	Parent=Os01t0678050-00
Chr01	irgsp1_rep	three_prime_UTR	27877175	27877206	.	-	.	Parent=Os01t0678050-00
Chr01	irgsp1_rep	mRNA	27883020	27886068	.	+	.	ID=Os01t0678100-01;Name=Os01t0678100-01;Locus_id=Os01g0678100;Note=Protein of unknown function DUF2921 domain containing protein.;Transcript_evidence=AK099717 (DDBJ%2C Best hit);ORF_evidence=B9EYL1 (UniProt);InterPro=Protein of unknown function DUF2921 (IPR021319);NIAS_FLcDNA=J013086I08;Expression=AK099717;TENOR=Os01t0678100-01;KEGG=Os01t0678100-01
Chr01	irgsp1_rep	five_prime_UTR	27883020	27883099	.	+	.	Parent=Os01t0678100-01
Chr01	irgsp1_rep	CDS	27883100	27886003	.	+	0	Parent=Os01t0678100-01
Chr01	irgsp1_rep	three_prime_UTR	27886004	27886068	.	+	.	Parent=Os01t0678100-01
Chr01	irgsp1_rep	mRNA	27896354	27898031	.	+	.	ID=Os01t0678400-01;Name=Os01t0678400-01;Locus_id=Os01g0678400;Note=Protein of unknown function DUF2921 domain containing protein.;Transcript_evidence=AK106072 (DDBJ%2C Best hit);ORF_evidence=A2ZWI5 (UniProt);InterPro=Protein of unknown function DUF2921 (IPR021319);NIAS_FLcDNA=001-206-H08;Expression=AK106072;TENOR=Os01t0678400-01;KEGG=Os01t0678400-01
Chr01	irgsp1_rep	five_prime_UTR	27896354	27896393	.	+	.	Parent=Os01t0678400-01
Chr01	irgsp1_rep	CDS	27896394	27898031	.	+	0	Parent=Os01t0678400-01
Chr01	irgsp1_rep	mRNA	27906702	27920949	.	-	.	ID=Os01t0678500-01;Name=Os01t0678500-01;Locus_id=Os01g0678500;RAP-DB Gene Symbol Synonym(s)=TPC1%2C OsTPC1%2C Tpc1%2C OsCC1%2C OsCL1 pore;RAP-DB Gene Name Synonym(s)=TWO-PORE CHANNEL 1%2C Two pore calcium channel protein 1%2C Two-pore channel 1%2C Voltage-dependent calcium channel protein TPC1;CGSNL Gene Symbol=TPC1;CGSNL Gene Name=TWO-PORE CHANNEL 1;Oryzabase Gene Symbol Synonym(s)=OsTPC1%2C Tpc1%2C OsCC1%2C OsCL1 pore;Oryzabase Gene Name Synonym(s)=Two pore calcium channel protein 1%2C Two-pore channel 1%2C Voltage-dependent calcium channel protein TPC1;Note=Voltage-gated Ca2+ channel  protein%2C Elicitor-induced defense reponses%2C Hypersensitive cell death%2C Activation of MAPK cascade;Transcript_evidence=AB100696 (Genbank),AB071014 (Genbank),AK067839 (Genbank);ORF_evidence=Q5QM84 (UniProt),B9EYL2 (UniProt);GO=Biological Process: ion transport (GO:0006811),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: ion channel activity (GO:0005216),Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),Ion transport (IPR005821),EF-hand-like domain (IPR011992),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J013126J24;Manual Curation=July 27%2C 2010;Literature_PMID=15111725,15215504,15941394;Oryzabase=3069;TENOR=Os01t0678500-01;KEGG=Os01t0678500-01
Chr01	irgsp1_rep	five_prime_UTR	27920808	27920949	.	-	.	Parent=Os01t0678500-01
Chr01	irgsp1_rep	CDS	27920592	27920807	.	-	0	Parent=Os01t0678500-01
Chr01	irgsp1_rep	CDS	27919310	27919453	.	-	0	Parent=Os01t0678500-01
Chr01	irgsp1_rep	CDS	27919096	27919203	.	-	0	Parent=Os01t0678500-01
Chr01	irgsp1_rep	CDS	27918575	27918670	.	-	0	Parent=Os01t0678500-01
Chr01	irgsp1_rep	CDS	27917946	27918055	.	-	0	Parent=Os01t0678500-01
Chr01	irgsp1_rep	CDS	27916703	27916763	.	-	1	Parent=Os01t0678500-01
Chr01	irgsp1_rep	CDS	27916059	27916225	.	-	0	Parent=Os01t0678500-01
Chr01	irgsp1_rep	CDS	27915866	27915971	.	-	1	Parent=Os01t0678500-01
Chr01	irgsp1_rep	CDS	27915665	27915742	.	-	0	Parent=Os01t0678500-01
Chr01	irgsp1_rep	CDS	27915181	27915242	.	-	0	Parent=Os01t0678500-01
Chr01	irgsp1_rep	CDS	27913969	27914041	.	-	1	Parent=Os01t0678500-01
Chr01	irgsp1_rep	CDS	27913049	27913114	.	-	0	Parent=Os01t0678500-01
Chr01	irgsp1_rep	CDS	27912555	27912698	.	-	0	Parent=Os01t0678500-01
Chr01	irgsp1_rep	CDS	27911866	27911923	.	-	0	Parent=Os01t0678500-01
Chr01	irgsp1_rep	CDS	27911096	27911203	.	-	2	Parent=Os01t0678500-01
Chr01	irgsp1_rep	CDS	27910448	27910511	.	-	2	Parent=Os01t0678500-01
Chr01	irgsp1_rep	CDS	27909876	27910044	.	-	1	Parent=Os01t0678500-01
Chr01	irgsp1_rep	CDS	27909457	27909521	.	-	0	Parent=Os01t0678500-01
Chr01	irgsp1_rep	CDS	27909226	27909316	.	-	1	Parent=Os01t0678500-01
Chr01	irgsp1_rep	CDS	27908686	27908772	.	-	0	Parent=Os01t0678500-01
Chr01	irgsp1_rep	CDS	27908415	27908486	.	-	0	Parent=Os01t0678500-01
Chr01	irgsp1_rep	CDS	27907813	27907853	.	-	0	Parent=Os01t0678500-01
Chr01	irgsp1_rep	CDS	27907647	27907734	.	-	1	Parent=Os01t0678500-01
Chr01	irgsp1_rep	three_prime_UTR	27907635	27907646	.	-	.	Parent=Os01t0678500-01
Chr01	irgsp1_rep	three_prime_UTR	27906702	27907062	.	-	.	Parent=Os01t0678500-01
Chr01	irgsp1_rep	mRNA	27906660	27920895	.	-	.	ID=Os01t0678500-02;Name=Os01t0678500-02;Locus_id=Os01g0678500;RAP-DB Gene Symbol Synonym(s)=TPC1%2C OsTPC1%2C Tpc1%2C OsCC1;RAP-DB Gene Name Synonym(s)=TWO-PORE CHANNEL 1%2C Oryza sativa two-pore channel 1%2C Two-pore channel 1%2C Two pore calcium channel protein 1%2C Voltage-dependent calcium channel protein TPC1;CGSNL Gene Symbol=TPC1;CGSNL Gene Name=TWO-PORE CHANNEL 1;Oryzabase Gene Symbol Synonym(s)=OsTPC1%2C Tpc1%2C OsCC1%2C OsCL1 pore;Oryzabase Gene Name Synonym(s)=Two pore calcium channel protein 1%2C Two-pore channel 1%2C Voltage-dependent calcium channel protein TPC1;Note=Voltage-gated Ca2+ channel  protein%2C Elicitor-induced defense reponses%2C Hypersensitive cell death%2C Activation of MAPK cascade;Transcript_evidence=AK100998 (Genbank);ORF_evidence=Q5QM84 (UniProt),B9EYL2 (UniProt);GO=Biological Process: ion transport (GO:0006811),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: ion channel activity (GO:0005216),Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),Ion transport (IPR005821),EF-hand-like domain (IPR011992),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J023146P13;Manual Curation=July 27%2C 2010;Literature_PMID=15111725,15215504,15941394;Oryzabase=3069;TENOR=Os01t0678500-02;KEGG=Os01t0678500-02
Chr01	irgsp1_rep	five_prime_UTR	27920808	27920895	.	-	.	Parent=Os01t0678500-02
Chr01	irgsp1_rep	CDS	27920592	27920807	.	-	0	Parent=Os01t0678500-02
Chr01	irgsp1_rep	CDS	27919310	27919453	.	-	0	Parent=Os01t0678500-02
Chr01	irgsp1_rep	CDS	27919096	27919203	.	-	0	Parent=Os01t0678500-02
Chr01	irgsp1_rep	CDS	27918575	27918670	.	-	0	Parent=Os01t0678500-02
Chr01	irgsp1_rep	CDS	27917946	27918055	.	-	0	Parent=Os01t0678500-02
Chr01	irgsp1_rep	CDS	27916703	27916763	.	-	1	Parent=Os01t0678500-02
Chr01	irgsp1_rep	CDS	27916059	27916225	.	-	0	Parent=Os01t0678500-02
Chr01	irgsp1_rep	CDS	27915866	27915971	.	-	1	Parent=Os01t0678500-02
Chr01	irgsp1_rep	CDS	27915665	27915742	.	-	0	Parent=Os01t0678500-02
Chr01	irgsp1_rep	CDS	27915181	27915242	.	-	0	Parent=Os01t0678500-02
Chr01	irgsp1_rep	CDS	27913969	27914041	.	-	1	Parent=Os01t0678500-02
Chr01	irgsp1_rep	CDS	27913049	27913114	.	-	0	Parent=Os01t0678500-02
Chr01	irgsp1_rep	CDS	27912555	27912698	.	-	0	Parent=Os01t0678500-02
Chr01	irgsp1_rep	CDS	27911866	27911923	.	-	0	Parent=Os01t0678500-02
Chr01	irgsp1_rep	CDS	27911096	27911203	.	-	2	Parent=Os01t0678500-02
Chr01	irgsp1_rep	CDS	27910448	27910511	.	-	2	Parent=Os01t0678500-02
Chr01	irgsp1_rep	CDS	27909876	27910044	.	-	1	Parent=Os01t0678500-02
Chr01	irgsp1_rep	CDS	27909457	27909521	.	-	0	Parent=Os01t0678500-02
Chr01	irgsp1_rep	CDS	27909226	27909316	.	-	1	Parent=Os01t0678500-02
Chr01	irgsp1_rep	CDS	27908686	27908772	.	-	0	Parent=Os01t0678500-02
Chr01	irgsp1_rep	CDS	27908415	27908486	.	-	0	Parent=Os01t0678500-02
Chr01	irgsp1_rep	CDS	27907813	27907853	.	-	0	Parent=Os01t0678500-02
Chr01	irgsp1_rep	CDS	27907647	27907734	.	-	1	Parent=Os01t0678500-02
Chr01	irgsp1_rep	three_prime_UTR	27907635	27907646	.	-	.	Parent=Os01t0678500-02
Chr01	irgsp1_rep	three_prime_UTR	27906660	27907086	.	-	.	Parent=Os01t0678500-02
Chr01	irgsp1_rep	mRNA	27922318	27924335	.	+	.	ID=Os01t0678600-01;Name=Os01t0678600-01;Locus_id=Os01g0678600;Oryzabase Gene Symbol Synonym(s)=RPS20%2C OsRPS20%2C rps20;Oryzabase Gene Name Synonym(s)=ribosomal protein S20%2C ribosomal protein small subunit 20;Note=Ribosomal protein S20 family protein.;Transcript_evidence=AK120629 (DDBJ%2C Best hit),AK063019 (DDBJ%2C Best hit);ORF_evidence=B6UG52 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S20 (IPR002583);NIAS_FLcDNA=J013153D21,001-110-B01;Oryzabase=19977,22695;TENOR=Os01t0678600-01
Chr01	irgsp1_rep	five_prime_UTR	27922318	27922349	.	+	.	Parent=Os01t0678600-01
Chr01	irgsp1_rep	CDS	27922350	27922497	.	+	0	Parent=Os01t0678600-01
Chr01	irgsp1_rep	CDS	27922579	27922784	.	+	2	Parent=Os01t0678600-01
Chr01	irgsp1_rep	CDS	27923811	27924047	.	+	0	Parent=Os01t0678600-01
Chr01	irgsp1_rep	three_prime_UTR	27924048	27924335	.	+	.	Parent=Os01t0678600-01
Chr01	irgsp1_rep	mRNA	27922530	27923176	.	+	.	ID=Os01t0678600-02;Name=Os01t0678600-02;Locus_id=Os01g0678600;Oryzabase Gene Symbol Synonym(s)=RPS20%2C OsRPS20%2C rps20;Oryzabase Gene Name Synonym(s)=ribosomal protein S20%2C ribosomal protein small subunit 20;Note=Similar to ribosomal protein rpS20.;Transcript_evidence=AK071536 (DDBJ%2C Best hit);ORF_evidence=B6UG52 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S20 (IPR002583);NIAS_FLcDNA=J023101N15;Oryzabase=19977,22695;Expression=AK071536;TENOR=Os01t0678600-02;KEGG=Os01t0678600-02
Chr01	irgsp1_rep	five_prime_UTR	27922530	27922565	.	+	.	Parent=Os01t0678600-02
Chr01	irgsp1_rep	CDS	27922566	27922829	.	+	0	Parent=Os01t0678600-02
Chr01	irgsp1_rep	three_prime_UTR	27922830	27923176	.	+	.	Parent=Os01t0678600-02
Chr01	irgsp1_rep	mRNA	27923877	27924331	.	+	.	ID=Os01t0678600-03;Name=Os01t0678600-03;Locus_id=Os01g0678600;Oryzabase Gene Symbol Synonym(s)=RPS20%2C OsRPS20%2C rps20;Oryzabase Gene Name Synonym(s)=ribosomal protein S20%2C ribosomal protein small subunit 20;Note=Similar to ribosomal protein rpS20.;Transcript_evidence=AK062194 (DDBJ%2C Best hit);ORF_evidence=B6UG52 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S20 (IPR002583);NIAS_FLcDNA=001-046-F06;Oryzabase=19977,22695;Expression=AK062194;TENOR=Os01t0678600-03;KEGG=Os01t0678600-03
Chr01	irgsp1_rep	CDS	27923877	27924047	.	+	0	Parent=Os01t0678600-03
Chr01	irgsp1_rep	three_prime_UTR	27924048	27924331	.	+	.	Parent=Os01t0678600-03
Chr01	irgsp1_rep	mRNA	27924913	27928433	.	-	.	ID=Os01t0678700-01;Name=Os01t0678700-01;Locus_id=Os01g0678700;Oryzabase Gene Symbol Synonym(s)=Orysa%3BDP1%2C OsDP1%2C DP1;Note=DP protein.;Transcript_evidence=AK111611 (DDBJ%2C Best hit);ORF_evidence=Q9FET1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: transcription factor complex (GO:0005667),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Transcription factor E2F/dimerisation partner (TDP) (IPR003316),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Transcription factor DP%2C C-terminal (IPR014889),Transcription factor DP (IPR015648),Transcription factor DP%2C subgroup (IPR016556);NIAS_FLcDNA=J013105I18;Oryzabase=13316;Expression=AK111611;TENOR=Os01t0678700-01;KEGG=Os01t0678700-01
Chr01	irgsp1_rep	five_prime_UTR	27928422	27928433	.	-	.	Parent=Os01t0678700-01
Chr01	irgsp1_rep	CDS	27928100	27928421	.	-	0	Parent=Os01t0678700-01
Chr01	irgsp1_rep	CDS	27927085	27927128	.	-	2	Parent=Os01t0678700-01
Chr01	irgsp1_rep	CDS	27926450	27926503	.	-	0	Parent=Os01t0678700-01
Chr01	irgsp1_rep	CDS	27926231	27926371	.	-	0	Parent=Os01t0678700-01
Chr01	irgsp1_rep	CDS	27926077	27926145	.	-	0	Parent=Os01t0678700-01
Chr01	irgsp1_rep	CDS	27925873	27925968	.	-	0	Parent=Os01t0678700-01
Chr01	irgsp1_rep	CDS	27925357	27925427	.	-	0	Parent=Os01t0678700-01
Chr01	irgsp1_rep	CDS	27925189	27925276	.	-	1	Parent=Os01t0678700-01
Chr01	irgsp1_rep	three_prime_UTR	27924913	27925188	.	-	.	Parent=Os01t0678700-01
Chr01	irgsp1_rep	mRNA	27930111	27930950	.	-	.	ID=Os01t0678800-01;Name=Os01t0678800-01;Locus_id=Os01g0678800;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK062840 (DDBJ%2C Best hit);ORF_evidence=A2WTS3 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);NIAS_FLcDNA=001-107-H04;Expression=AK062840;TENOR=Os01t0678800-01;KEGG=Os01t0678800-01
Chr01	irgsp1_rep	five_prime_UTR	27930864	27930950	.	-	.	Parent=Os01t0678800-01
Chr01	irgsp1_rep	CDS	27930858	27930863	.	-	0	Parent=Os01t0678800-01
Chr01	irgsp1_rep	CDS	27930686	27930758	.	-	0	Parent=Os01t0678800-01
Chr01	irgsp1_rep	CDS	27930239	27930597	.	-	2	Parent=Os01t0678800-01
Chr01	irgsp1_rep	three_prime_UTR	27930111	27930238	.	-	.	Parent=Os01t0678800-01
Chr01	irgsp1_rep	mRNA	27934099	27935001	.	-	.	ID=Os01t0678900-01;Name=Os01t0678900-01;Locus_id=Os01g0678900;Note=Non-protein coding transcript.;Transcript_evidence=AK107736 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-132-G03;TENOR=Os01t0678900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	exon	27934603	27935001	.	-	.	Parent=Os01t0678900-01
Chr01	irgsp1_rep	exon	27934099	27934465	.	-	.	Parent=Os01t0678900-01
Chr01	irgsp1_rep	mRNA	27932359	27936866	.	+	.	ID=Os01t0678950-01;Name=Os01t0678950-01;Locus_id=Os01g0678950;Note=Non-protein coding transcript.;Transcript_evidence=AK289157 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090099P09;TENOR=Os01t0678950-01
Chr01	irgsp1_rep	exon	27932359	27936866	.	+	.	Parent=Os01t0678950-01
Chr01	irgsp1_rep	mRNA	27938801	27946972	.	+	.	ID=Os01t0679000-01;Name=Os01t0679000-01;Locus_id=Os01g0679000;Note=RNA polymerase III Rpc82%2C C -terminal domain containing protein.;Transcript_evidence=AK058515 (DDBJ%2C Best hit);ORF_evidence=D8L9P3 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899);InterPro=RNA polymerase III Rpc82%2C C -terminal (IPR008806),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),RNA polymerase III subunit RPC82-related%2C helix-turn-helix (IPR013197);NIAS_FLcDNA=001-016-G12;Expression=AK058515;TENOR=Os01t0679000-01;KEGG=Os01t0679000-01 (EC:2.7.7.6)
Chr01	irgsp1_rep	five_prime_UTR	27938801	27938860	.	+	.	Parent=Os01t0679000-01
Chr01	irgsp1_rep	CDS	27938861	27938929	.	+	0	Parent=Os01t0679000-01
Chr01	irgsp1_rep	CDS	27939068	27939212	.	+	0	Parent=Os01t0679000-01
Chr01	irgsp1_rep	CDS	27939302	27939408	.	+	2	Parent=Os01t0679000-01
Chr01	irgsp1_rep	CDS	27940575	27940660	.	+	0	Parent=Os01t0679000-01
Chr01	irgsp1_rep	CDS	27940821	27940971	.	+	1	Parent=Os01t0679000-01
Chr01	irgsp1_rep	CDS	27941418	27941564	.	+	0	Parent=Os01t0679000-01
Chr01	irgsp1_rep	CDS	27941761	27941871	.	+	0	Parent=Os01t0679000-01
Chr01	irgsp1_rep	CDS	27942290	27942389	.	+	0	Parent=Os01t0679000-01
Chr01	irgsp1_rep	CDS	27942857	27942997	.	+	2	Parent=Os01t0679000-01
Chr01	irgsp1_rep	CDS	27944039	27944076	.	+	2	Parent=Os01t0679000-01
Chr01	irgsp1_rep	CDS	27944190	27944282	.	+	0	Parent=Os01t0679000-01
Chr01	irgsp1_rep	CDS	27944486	27944569	.	+	0	Parent=Os01t0679000-01
Chr01	irgsp1_rep	CDS	27945843	27945992	.	+	0	Parent=Os01t0679000-01
Chr01	irgsp1_rep	CDS	27946647	27946745	.	+	0	Parent=Os01t0679000-01
Chr01	irgsp1_rep	three_prime_UTR	27946746	27946972	.	+	.	Parent=Os01t0679000-01
Chr01	irgsp1_rep	mRNA	27939149	27947024	.	+	.	ID=Os01t0679000-02;Name=Os01t0679000-02;Locus_id=Os01g0679000;Note=Hypothetical conserved gene.;Transcript_evidence=AK068292 (DDBJ%2C Best hit);ORF_evidence=D8L9P3 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899);InterPro=RNA polymerase III Rpc82%2C C -terminal (IPR008806);NIAS_FLcDNA=J013149O08;Expression=AK068292;TENOR=Os01t0679000-02;KEGG=Os01t0679000-02 (EC:2.7.7.6)
Chr01	irgsp1_rep	CDS	27939149	27939212	.	+	0	Parent=Os01t0679000-02
Chr01	irgsp1_rep	CDS	27939302	27939408	.	+	2	Parent=Os01t0679000-02
Chr01	irgsp1_rep	CDS	27940575	27940660	.	+	0	Parent=Os01t0679000-02
Chr01	irgsp1_rep	CDS	27940821	27940971	.	+	1	Parent=Os01t0679000-02
Chr01	irgsp1_rep	CDS	27941418	27941564	.	+	0	Parent=Os01t0679000-02
Chr01	irgsp1_rep	CDS	27941761	27941871	.	+	0	Parent=Os01t0679000-02
Chr01	irgsp1_rep	CDS	27942290	27942389	.	+	0	Parent=Os01t0679000-02
Chr01	irgsp1_rep	CDS	27942857	27942997	.	+	2	Parent=Os01t0679000-02
Chr01	irgsp1_rep	CDS	27944039	27944076	.	+	2	Parent=Os01t0679000-02
Chr01	irgsp1_rep	CDS	27944190	27944282	.	+	0	Parent=Os01t0679000-02
Chr01	irgsp1_rep	CDS	27944486	27944569	.	+	0	Parent=Os01t0679000-02
Chr01	irgsp1_rep	CDS	27945843	27945992	.	+	0	Parent=Os01t0679000-02
Chr01	irgsp1_rep	CDS	27946647	27946745	.	+	0	Parent=Os01t0679000-02
Chr01	irgsp1_rep	three_prime_UTR	27946746	27947024	.	+	.	Parent=Os01t0679000-02
Chr01	irgsp1_rep	mRNA	27950359	27951354	.	+	.	ID=Os01t0679300-01;Name=Os01t0679300-01;Locus_id=Os01g0679300;Note=Non-protein coding transcript.;Transcript_evidence=AK102535 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J033096H06;TENOR=Os01t0679300-01
Chr01	irgsp1_rep	exon	27950359	27951354	.	+	.	Parent=Os01t0679300-01
Chr01	irgsp1_rep	mRNA	27953310	27953872	.	+	.	ID=Os01t0679400-01;Name=Os01t0679400-01;Locus_id=Os01g0679400;Note=Non-protein coding transcript.;Transcript_evidence=AK107970 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-135-D06;TENOR=Os01t0679400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	exon	27953310	27953872	.	+	.	Parent=Os01t0679400-01
Chr01	irgsp1_rep	mRNA	27956735	27959135	.	+	.	ID=Os01t0679500-01;Name=Os01t0679500-01;Locus_id=Os01g0679500;Note=Peptidase aspartic%2C catalytic domain containing protein.;Transcript_evidence=AK318527 (DDBJ%2C Best hit);ORF_evidence=NP_001043866.2 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J065138J08;TENOR=Os01t0679500-01;KEGG=Os01t0679500-01
Chr01	irgsp1_rep	five_prime_UTR	27956735	27956937	.	+	.	Parent=Os01t0679500-01
Chr01	irgsp1_rep	CDS	27956938	27957588	.	+	0	Parent=Os01t0679500-01
Chr01	irgsp1_rep	three_prime_UTR	27957589	27959135	.	+	.	Parent=Os01t0679500-01
Chr01	irgsp1_rep	mRNA	27960362	27961312	.	+	.	ID=Os01t0679550-00;Name=Os01t0679550-00;Locus_id=Os01g0679550;Note=Similar to Aspartic proteinase nepenthesin-2.;Transcript_evidence=ab initio prediction;ORF_evidence=B4FXW6 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);TENOR=Os01t0679550-00;KEGG=Os01t0679550-00
Chr01	irgsp1_rep	CDS	27960362	27961312	.	+	0	Parent=Os01t0679550-00
Chr01	irgsp1_rep	mRNA	27961739	27965378	.	+	.	ID=Os01t0679600-01;Name=Os01t0679600-01;Locus_id=Os01g0679600;Note=Similar to THAP domain-containing protein 4.;Transcript_evidence=AK062709 (DDBJ%2C Best hit);ORF_evidence=B6T7L5 (UniProt);InterPro=Calycin-like (IPR011038),Domain of unknown function DUF1794 (IPR014878);NIAS_FLcDNA=001-106-B12;Expression=AK062709;TENOR=Os01t0679600-01;KEGG=Os01t0679600-01
Chr01	irgsp1_rep	five_prime_UTR	27961739	27961746	.	+	.	Parent=Os01t0679600-01
Chr01	irgsp1_rep	CDS	27961747	27961956	.	+	0	Parent=Os01t0679600-01
Chr01	irgsp1_rep	CDS	27962038	27962178	.	+	0	Parent=Os01t0679600-01
Chr01	irgsp1_rep	CDS	27964664	27964732	.	+	0	Parent=Os01t0679600-01
Chr01	irgsp1_rep	CDS	27965065	27965175	.	+	0	Parent=Os01t0679600-01
Chr01	irgsp1_rep	three_prime_UTR	27965176	27965378	.	+	.	Parent=Os01t0679600-01
Chr01	irgsp1_rep	mRNA	27961768	27965436	.	+	.	ID=Os01t0679600-02;Name=Os01t0679600-02;Locus_id=Os01g0679600;Note=Region of unknown function DUF1794 domain containing protein.;Transcript_evidence=AK062530 (DDBJ%2C Best hit);ORF_evidence=B6T7L5 (UniProt);InterPro=Calycin-like (IPR011038),Domain of unknown function DUF1794 (IPR014878);NIAS_FLcDNA=001-104-E02;Expression=AK062530;TENOR=Os01t0679600-02;KEGG=Os01t0679600-02
Chr01	irgsp1_rep	five_prime_UTR	27961768	27961794	.	+	.	Parent=Os01t0679600-02
Chr01	irgsp1_rep	CDS	27961795	27961956	.	+	0	Parent=Os01t0679600-02
Chr01	irgsp1_rep	CDS	27962038	27962178	.	+	0	Parent=Os01t0679600-02
Chr01	irgsp1_rep	CDS	27964664	27964732	.	+	0	Parent=Os01t0679600-02
Chr01	irgsp1_rep	CDS	27965056	27965175	.	+	0	Parent=Os01t0679600-02
Chr01	irgsp1_rep	three_prime_UTR	27965176	27965436	.	+	.	Parent=Os01t0679600-02
Chr01	irgsp1_rep	mRNA	27965722	27968107	.	-	.	ID=Os01t0679700-02;Name=Os01t0679700-02;Locus_id=Os01g0679700;Note=Similar to 60S ribosomal protein L37a.;Transcript_evidence=AK119702 (DDBJ%2C Best hit),AK119801 (DDBJ%2C Best hit);ORF_evidence=NP_001147066.1 (RefSeq);NIAS_FLcDNA=002-157-D09,002-176-A08;Expression=AK119702;TENOR=Os01t0679700-02;KEGG=Os01t0679700-02
Chr01	irgsp1_rep	five_prime_UTR	27968031	27968107	.	-	.	Parent=Os01t0679700-02
Chr01	irgsp1_rep	CDS	27968028	27968030	.	-	0	Parent=Os01t0679700-02
Chr01	irgsp1_rep	CDS	27967130	27967169	.	-	0	Parent=Os01t0679700-02
Chr01	irgsp1_rep	CDS	27966962	27967050	.	-	2	Parent=Os01t0679700-02
Chr01	irgsp1_rep	CDS	27966084	27966166	.	-	0	Parent=Os01t0679700-02
Chr01	irgsp1_rep	CDS	27965930	27965993	.	-	1	Parent=Os01t0679700-02
Chr01	irgsp1_rep	three_prime_UTR	27965722	27965929	.	-	.	Parent=Os01t0679700-02
Chr01	irgsp1_rep	mRNA	27965727	27966168	.	-	.	ID=Os01t0679700-03;Name=Os01t0679700-03;Locus_id=Os01g0679700;Note=Similar to 60S ribosomal protein L37a.;Transcript_evidence=AK059643 (DDBJ%2C Best hit);ORF_evidence=NP_001147066.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L37ae (IPR002674),Ribosomal protein L37ae/L37e%2C N-terminal (IPR011331),Ribosomal protein%2C zinc-binding domain (IPR011332);NIAS_FLcDNA=001-031-B10;Expression=AK059643;TENOR=Os01t0679700-03;KEGG=Os01t0679700-03
Chr01	irgsp1_rep	five_prime_UTR	27966167	27966168	.	-	.	Parent=Os01t0679700-03
Chr01	irgsp1_rep	CDS	27966084	27966166	.	-	0	Parent=Os01t0679700-03
Chr01	irgsp1_rep	CDS	27965930	27965993	.	-	1	Parent=Os01t0679700-03
Chr01	irgsp1_rep	three_prime_UTR	27965727	27965929	.	-	.	Parent=Os01t0679700-03
Chr01	irgsp1_rep	mRNA	27983688	27990347	.	+	.	ID=Os01t0679900-01;Name=Os01t0679900-01;Locus_id=Os01g0679900;Note=Similar to Ythdf2-prov protein.;Transcript_evidence=AK120262 (DDBJ%2C Best hit);ORF_evidence=Q5QM95 (UniProt);InterPro=YTH domain (IPR007275);NIAS_FLcDNA=J013046L18;Expression=AK120262;TENOR=Os01t0679900-01;KEGG=Os01t0679900-01
Chr01	irgsp1_rep	five_prime_UTR	27983688	27984017	.	+	.	Parent=Os01t0679900-01
Chr01	irgsp1_rep	CDS	27984018	27984048	.	+	0	Parent=Os01t0679900-01
Chr01	irgsp1_rep	CDS	27985069	27985133	.	+	2	Parent=Os01t0679900-01
Chr01	irgsp1_rep	CDS	27985281	27985425	.	+	0	Parent=Os01t0679900-01
Chr01	irgsp1_rep	CDS	27985536	27985603	.	+	2	Parent=Os01t0679900-01
Chr01	irgsp1_rep	CDS	27986372	27986815	.	+	0	Parent=Os01t0679900-01
Chr01	irgsp1_rep	CDS	27986905	27987423	.	+	0	Parent=Os01t0679900-01
Chr01	irgsp1_rep	CDS	27987744	27987956	.	+	0	Parent=Os01t0679900-01
Chr01	irgsp1_rep	CDS	27988392	27988547	.	+	0	Parent=Os01t0679900-01
Chr01	irgsp1_rep	CDS	27989495	27989683	.	+	0	Parent=Os01t0679900-01
Chr01	irgsp1_rep	three_prime_UTR	27989684	27990347	.	+	.	Parent=Os01t0679900-01
Chr01	irgsp1_rep	mRNA	27984772	27990347	.	+	.	ID=Os01t0679900-02;Name=Os01t0679900-02;Locus_id=Os01g0679900;Note=Similar to predicted protein.;Transcript_evidence=AK121361 (DDBJ%2C Best hit);ORF_evidence=Q5QM95 (UniProt);InterPro=YTH domain (IPR007275);NIAS_FLcDNA=J023123N01;Expression=AK121361;TENOR=Os01t0679900-02;KEGG=Os01t0679900-02
Chr01	irgsp1_rep	five_prime_UTR	27984772	27985070	.	+	.	Parent=Os01t0679900-02
Chr01	irgsp1_rep	CDS	27985071	27985133	.	+	0	Parent=Os01t0679900-02
Chr01	irgsp1_rep	CDS	27985281	27985425	.	+	0	Parent=Os01t0679900-02
Chr01	irgsp1_rep	CDS	27985536	27985603	.	+	2	Parent=Os01t0679900-02
Chr01	irgsp1_rep	CDS	27986372	27986815	.	+	0	Parent=Os01t0679900-02
Chr01	irgsp1_rep	CDS	27986905	27987423	.	+	0	Parent=Os01t0679900-02
Chr01	irgsp1_rep	CDS	27987744	27987956	.	+	0	Parent=Os01t0679900-02
Chr01	irgsp1_rep	CDS	27988392	27988547	.	+	0	Parent=Os01t0679900-02
Chr01	irgsp1_rep	CDS	27989495	27989683	.	+	0	Parent=Os01t0679900-02
Chr01	irgsp1_rep	three_prime_UTR	27989684	27990347	.	+	.	Parent=Os01t0679900-02
Chr01	irgsp1_rep	mRNA	27985319	27990266	.	+	.	ID=Os01t0679900-03;Name=Os01t0679900-03;Locus_id=Os01g0679900;Note=Conserved hypothetical protein.;Transcript_evidence=AK100018 (DDBJ%2C Best hit);ORF_evidence=Q5QM95 (UniProt);NIAS_FLcDNA=J013144M15;TENOR=Os01t0679900-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	27985319	27985319	.	+	.	Parent=Os01t0679900-03
Chr01	irgsp1_rep	CDS	27985320	27985425	.	+	0	Parent=Os01t0679900-03
Chr01	irgsp1_rep	CDS	27985536	27985939	.	+	2	Parent=Os01t0679900-03
Chr01	irgsp1_rep	three_prime_UTR	27985940	27986815	.	+	.	Parent=Os01t0679900-03
Chr01	irgsp1_rep	three_prime_UTR	27986905	27987423	.	+	.	Parent=Os01t0679900-03
Chr01	irgsp1_rep	three_prime_UTR	27987744	27987956	.	+	.	Parent=Os01t0679900-03
Chr01	irgsp1_rep	three_prime_UTR	27988392	27988547	.	+	.	Parent=Os01t0679900-03
Chr01	irgsp1_rep	three_prime_UTR	27989495	27990266	.	+	.	Parent=Os01t0679900-03
Chr01	irgsp1_rep	mRNA	27983698	27989742	.	-	.	ID=Os01t0680000-00;Name=Os01t0680000-00;Locus_id=Os01g0680000;Note=Hypothetical protein.;Transcript_evidence=tplb0021a03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0680000-00
Chr01	irgsp1_rep	five_prime_UTR	27989493	27989742	.	-	.	Parent=Os01t0680000-00
Chr01	irgsp1_rep	five_prime_UTR	27988390	27988545	.	-	.	Parent=Os01t0680000-00
Chr01	irgsp1_rep	five_prime_UTR	27987741	27987954	.	-	.	Parent=Os01t0680000-00
Chr01	irgsp1_rep	five_prime_UTR	27986890	27987421	.	-	.	Parent=Os01t0680000-00
Chr01	irgsp1_rep	five_prime_UTR	27986360	27986804	.	-	.	Parent=Os01t0680000-00
Chr01	irgsp1_rep	five_prime_UTR	27985534	27985598	.	-	.	Parent=Os01t0680000-00
Chr01	irgsp1_rep	five_prime_UTR	27985273	27985423	.	-	.	Parent=Os01t0680000-00
Chr01	irgsp1_rep	five_prime_UTR	27985054	27985129	.	-	.	Parent=Os01t0680000-00
Chr01	irgsp1_rep	CDS	27985053	27985053	.	-	0	Parent=Os01t0680000-00
Chr01	irgsp1_rep	CDS	27983698	27984046	.	-	2	Parent=Os01t0680000-00
Chr01	irgsp1_rep	mRNA	27995795	27997388	.	-	.	ID=Os01t0680100-01;Name=Os01t0680100-01;Locus_id=Os01g0680100;Note=Hypothetical protein.;Transcript_evidence=AK109677 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-145-C04;Expression=AK109677;TENOR=Os01t0680100-01;KEGG=Os01t0680100-01
Chr01	irgsp1_rep	five_prime_UTR	27996954	27997388	.	-	.	Parent=Os01t0680100-01
Chr01	irgsp1_rep	CDS	27996273	27996953	.	-	0	Parent=Os01t0680100-01
Chr01	irgsp1_rep	three_prime_UTR	27995795	27996272	.	-	.	Parent=Os01t0680100-01
Chr01	irgsp1_rep	mRNA	27995961	27997544	.	+	.	ID=Os01t0680200-01;Name=Os01t0680200-01;Locus_id=Os01g0680200;RAP-DB Gene Symbol Synonym(s)=OsPUP4%2C BG3/OsPUP4%2C BG3;RAP-DB Gene Name Synonym(s)=PURINE PERMEASE 4%2C Big Grain3;CGSNL Gene Symbol=PUP4;CGSNL Gene Name=PURINE PERMEASE 4;Oryzabase Gene Symbol Synonym(s)=OsPUP4%2C BG3/OsPUP4%2C BG3%2C OsBG3;Oryzabase Gene Name Synonym(s)=purine permease 4%2C PUP-type cytokinin transporter 4%2C Big Grain3%2C BIG GRAIN 3;Note=Purine permease%2C "Regulation of grain size%2C grain number and leaf elongation"%2C Modulation of cytokinin transport;Transcript_evidence=AK121881;ORF_evidence=Q5QLF2;NIAS_FLcDNA=J033104L22;Manual Curation=May 20%2C 2020;Literature_PMID=30267474;Oryzabase=15005;Expression=AK121881;TENOR=Os01t0680200-01;KEGG=Os01t0680200-01;Subcellular location=plasma membrane (GO:0005886)
Chr01	irgsp1_rep	five_prime_UTR	27995961	27996021	.	+	.	Parent=Os01t0680200-01
Chr01	irgsp1_rep	CDS	27996022	27997185	.	+	0	Parent=Os01t0680200-01
Chr01	irgsp1_rep	three_prime_UTR	27997186	27997544	.	+	.	Parent=Os01t0680200-01
Chr01	irgsp1_rep	mRNA	28009051	28011750	.	+	.	ID=Os01t0680400-01;Name=Os01t0680400-01;Locus_id=Os01g0680400;Note=Histone-fold domain containing protein.;Transcript_evidence=AK067914 (DDBJ%2C Best hit);ORF_evidence=NP_001152593.1 (RefSeq);GO=Biological Process: transcription initiation from RNA polymerase II promoter (GO:0006367),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=TAFII28-like protein (IPR006809),Histone-fold (IPR009072);NIAS_FLcDNA=J013126J05;Expression=AK067914;TENOR=Os01t0680400-01;KEGG=Os01t0680400-01
Chr01	irgsp1_rep	five_prime_UTR	28009051	28009056	.	+	.	Parent=Os01t0680400-01
Chr01	irgsp1_rep	CDS	28009057	28009376	.	+	0	Parent=Os01t0680400-01
Chr01	irgsp1_rep	CDS	28010005	28010092	.	+	1	Parent=Os01t0680400-01
Chr01	irgsp1_rep	CDS	28011038	28011134	.	+	0	Parent=Os01t0680400-01
Chr01	irgsp1_rep	CDS	28011376	28011506	.	+	2	Parent=Os01t0680400-01
Chr01	irgsp1_rep	three_prime_UTR	28011507	28011750	.	+	.	Parent=Os01t0680400-01
Chr01	irgsp1_rep	mRNA	28012378	28014462	.	-	.	ID=Os01t0680500-01;Name=Os01t0680500-01;Locus_id=Os01g0680500;Note=Hypothetical protein.;Transcript_evidence=AK069325 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023017M17;Expression=AK069325;TENOR=Os01t0680500-01;KEGG=Os01t0680500-01
Chr01	irgsp1_rep	five_prime_UTR	28014164	28014462	.	-	.	Parent=Os01t0680500-01
Chr01	irgsp1_rep	five_prime_UTR	28013946	28014063	.	-	.	Parent=Os01t0680500-01
Chr01	irgsp1_rep	five_prime_UTR	28013628	28013783	.	-	.	Parent=Os01t0680500-01
Chr01	irgsp1_rep	CDS	28013190	28013627	.	-	0	Parent=Os01t0680500-01
Chr01	irgsp1_rep	three_prime_UTR	28012378	28013189	.	-	.	Parent=Os01t0680500-01
Chr01	irgsp1_rep	mRNA	28012679	28013739	.	+	.	ID=Os01t0680600-01;Name=Os01t0680600-01;Locus_id=Os01g0680600;Note=Conserved hypothetical protein.;Transcript_evidence=AK060930 (DDBJ%2C Best hit);ORF_evidence=B8A7L0 (UniProt);NIAS_FLcDNA=006-201-A10;Expression=AK060930;TENOR=Os01t0680600-01;KEGG=Os01t0680600-01
Chr01	irgsp1_rep	five_prime_UTR	28012679	28012738	.	+	.	Parent=Os01t0680600-01
Chr01	irgsp1_rep	CDS	28012739	28013644	.	+	0	Parent=Os01t0680600-01
Chr01	irgsp1_rep	three_prime_UTR	28013645	28013739	.	+	.	Parent=Os01t0680600-01
Chr01	irgsp1_rep	mRNA	28012727	28013713	.	+	.	ID=Os01t0680600-02;Name=Os01t0680600-02;Locus_id=Os01g0680600;Note=Conserved hypothetical protein.;Transcript_evidence=AK106055 (DDBJ%2C Best hit);ORF_evidence=B8A7L0 (UniProt);NIAS_FLcDNA=001-206-F07;Expression=AK106055;TENOR=Os01t0680600-02;KEGG=Os01t0680600-02
Chr01	irgsp1_rep	five_prime_UTR	28012727	28012738	.	+	.	Parent=Os01t0680600-02
Chr01	irgsp1_rep	CDS	28012739	28013644	.	+	0	Parent=Os01t0680600-02
Chr01	irgsp1_rep	three_prime_UTR	28013645	28013713	.	+	.	Parent=Os01t0680600-02
Chr01	irgsp1_rep	mRNA	28014729	28015022	.	+	.	ID=Os01t0680650-00;Name=Os01t0680650-00;Locus_id=Os01g0680650;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5QLE7 (UniProt);TENOR=Os01t0680650-00;KEGG=Os01t0680650-00
Chr01	irgsp1_rep	CDS	28014729	28015022	.	+	0	Parent=Os01t0680650-00
Chr01	irgsp1_rep	mRNA	28016284	28021413	.	-	.	ID=Os01t0680700-01;Name=Os01t0680700-01;Locus_id=Os01g0680700;Note=Protein of unknown function DUF1639 family protein.;Transcript_evidence=AK121420 (DDBJ%2C Best hit),AK100939 (DDBJ%2C Best hit);ORF_evidence=Q5QLF5 (UniProt);InterPro=Protein of unknown function DUF1639 (IPR012438);NIAS_FLcDNA=J023133L11,J023138C03;TENOR=Os01t0680700-01
Chr01	irgsp1_rep	five_prime_UTR	28021176	28021413	.	-	.	Parent=Os01t0680700-01
Chr01	irgsp1_rep	CDS	28021081	28021175	.	-	0	Parent=Os01t0680700-01
Chr01	irgsp1_rep	CDS	28019655	28020275	.	-	1	Parent=Os01t0680700-01
Chr01	irgsp1_rep	CDS	28018235	28018544	.	-	1	Parent=Os01t0680700-01
Chr01	irgsp1_rep	CDS	28018040	28018117	.	-	0	Parent=Os01t0680700-01
Chr01	irgsp1_rep	CDS	28016818	28016868	.	-	0	Parent=Os01t0680700-01
Chr01	irgsp1_rep	three_prime_UTR	28016284	28016817	.	-	.	Parent=Os01t0680700-01
Chr01	irgsp1_rep	mRNA	28017070	28021413	.	-	.	ID=Os01t0680700-02;Name=Os01t0680700-02;Locus_id=Os01g0680700;Note=Hypothetical conserved gene.;Transcript_evidence=AK120014 (DDBJ%2C Best hit);ORF_evidence=Q5QLF5 (UniProt);InterPro=Protein of unknown function DUF1639 (IPR012438);NIAS_FLcDNA=002-186-B05;Expression=AK120014;TENOR=Os01t0680700-02;KEGG=Os01t0680700-02
Chr01	irgsp1_rep	five_prime_UTR	28021176	28021413	.	-	.	Parent=Os01t0680700-02
Chr01	irgsp1_rep	CDS	28021081	28021175	.	-	0	Parent=Os01t0680700-02
Chr01	irgsp1_rep	CDS	28019655	28020275	.	-	1	Parent=Os01t0680700-02
Chr01	irgsp1_rep	CDS	28018202	28018544	.	-	1	Parent=Os01t0680700-02
Chr01	irgsp1_rep	three_prime_UTR	28017070	28018201	.	-	.	Parent=Os01t0680700-02
Chr01	irgsp1_rep	mRNA	28017879	28021407	.	-	.	ID=Os01t0680700-03;Name=Os01t0680700-03;Locus_id=Os01g0680700;Note=Hypothetical conserved gene.;Transcript_evidence=AK106904 (DDBJ%2C Best hit);ORF_evidence=B9EYL8 (UniProt);InterPro=Protein of unknown function DUF1639 (IPR012438);NIAS_FLcDNA=002-118-H11;Expression=AK106904;TENOR=Os01t0680700-03;KEGG=Os01t0680700-03
Chr01	irgsp1_rep	five_prime_UTR	28021176	28021407	.	-	.	Parent=Os01t0680700-03
Chr01	irgsp1_rep	CDS	28021081	28021175	.	-	0	Parent=Os01t0680700-03
Chr01	irgsp1_rep	CDS	28019655	28020275	.	-	1	Parent=Os01t0680700-03
Chr01	irgsp1_rep	CDS	28018235	28018544	.	-	1	Parent=Os01t0680700-03
Chr01	irgsp1_rep	CDS	28017923	28018117	.	-	0	Parent=Os01t0680700-03
Chr01	irgsp1_rep	three_prime_UTR	28017879	28017922	.	-	.	Parent=Os01t0680700-03
Chr01	irgsp1_rep	mRNA	28028793	28031687	.	-	.	ID=Os01t0680900-01;Name=Os01t0680900-01;Locus_id=Os01g0680900;Note=Similar to Dopamine beta-monooxygenase.;Transcript_evidence=AK060690 (DDBJ%2C Best hit);ORF_evidence=B4F9N6 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=CytoChrome b561%2C eukaryote (IPR004877),DOMON domain (IPR005018),CytoChrome b561/ferric reductase transmembrane (IPR006593);NIAS_FLcDNA=001-030-C01;Expression=AK060690;TENOR=Os01t0680900-01;KEGG=Os01t0680900-01
Chr01	irgsp1_rep	five_prime_UTR	28031479	28031687	.	-	.	Parent=Os01t0680900-01
Chr01	irgsp1_rep	CDS	28031305	28031478	.	-	0	Parent=Os01t0680900-01
Chr01	irgsp1_rep	CDS	28030809	28031205	.	-	0	Parent=Os01t0680900-01
Chr01	irgsp1_rep	CDS	28029974	28030257	.	-	2	Parent=Os01t0680900-01
Chr01	irgsp1_rep	CDS	28029059	28029322	.	-	0	Parent=Os01t0680900-01
Chr01	irgsp1_rep	three_prime_UTR	28028793	28029058	.	-	.	Parent=Os01t0680900-01
Chr01	irgsp1_rep	mRNA	28028749	28031574	.	-	.	ID=Os01t0680900-02;Name=Os01t0680900-02;Locus_id=Os01g0680900;Note=CytoChrome b561/ferric reductase transmembrane domain containing protein.;Transcript_evidence=AK069379 (DDBJ%2C Best hit);ORF_evidence=B4F9N6 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=CytoChrome b561%2C eukaryote (IPR004877),DOMON domain (IPR005018),CytoChrome b561/ferric reductase transmembrane (IPR006593);NIAS_FLcDNA=J023015H09;Expression=AK069379;TENOR=Os01t0680900-02;KEGG=Os01t0680900-02
Chr01	irgsp1_rep	five_prime_UTR	28031479	28031574	.	-	.	Parent=Os01t0680900-02
Chr01	irgsp1_rep	CDS	28031305	28031478	.	-	0	Parent=Os01t0680900-02
Chr01	irgsp1_rep	CDS	28030975	28031205	.	-	0	Parent=Os01t0680900-02
Chr01	irgsp1_rep	CDS	28030809	28030863	.	-	0	Parent=Os01t0680900-02
Chr01	irgsp1_rep	CDS	28029974	28030257	.	-	2	Parent=Os01t0680900-02
Chr01	irgsp1_rep	CDS	28029059	28029322	.	-	0	Parent=Os01t0680900-02
Chr01	irgsp1_rep	three_prime_UTR	28028749	28029058	.	-	.	Parent=Os01t0680900-02
Chr01	irgsp1_rep	mRNA	28030724	28032032	.	+	.	ID=Os01t0680950-01;Name=Os01t0680950-01;Locus_id=Os01g0680950;Note=Hypothetical gene.;Transcript_evidence=AK119489 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-134-C11;Expression=AK119489;TENOR=Os01t0680950-01;KEGG=Os01t0680950-01
Chr01	irgsp1_rep	five_prime_UTR	28030724	28030725	.	+	.	Parent=Os01t0680950-01
Chr01	irgsp1_rep	CDS	28030726	28031517	.	+	0	Parent=Os01t0680950-01
Chr01	irgsp1_rep	three_prime_UTR	28031518	28032032	.	+	.	Parent=Os01t0680950-01
Chr01	irgsp1_rep	mRNA	28033034	28051826	.	-	.	ID=Os01t0681000-01;Name=Os01t0681000-01;Locus_id=Os01g0681000;Note=Uncharacterised protein family UPF0089 domain containing protein.;Transcript_evidence=AK099862 (DDBJ%2C Best hit);ORF_evidence=A2ZWK1 (UniProt);GO=Molecular Function: diacylglycerol O-acyltransferase activity (GO:0004144);InterPro=O-acyltransferase%2C WSD1%2C N-terminal (IPR004255),O-acyltransferase%2C WSD1%2C C-terminal (IPR009721);NIAS_FLcDNA=J013111A08;Expression=AK099862;TENOR=Os01t0681000-01;KEGG=Os01t0681000-01
Chr01	irgsp1_rep	five_prime_UTR	28051674	28051826	.	-	.	Parent=Os01t0681000-01
Chr01	irgsp1_rep	CDS	28051380	28051673	.	-	0	Parent=Os01t0681000-01
Chr01	irgsp1_rep	CDS	28034591	28035223	.	-	0	Parent=Os01t0681000-01
Chr01	irgsp1_rep	CDS	28034427	28034493	.	-	0	Parent=Os01t0681000-01
Chr01	irgsp1_rep	CDS	28034230	28034306	.	-	2	Parent=Os01t0681000-01
Chr01	irgsp1_rep	CDS	28033893	28034108	.	-	0	Parent=Os01t0681000-01
Chr01	irgsp1_rep	CDS	28033524	28033661	.	-	0	Parent=Os01t0681000-01
Chr01	irgsp1_rep	CDS	28033254	28033424	.	-	0	Parent=Os01t0681000-01
Chr01	irgsp1_rep	three_prime_UTR	28033034	28033253	.	-	.	Parent=Os01t0681000-01
Chr01	irgsp1_rep	mRNA	28033166	28035196	.	+	.	ID=Os01t0681050-00;Name=Os01t0681050-00;Locus_id=Os01g0681050;Note=Hypothetical protein.;Transcript_evidence=tplb0040a14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0681050-00
Chr01	irgsp1_rep	five_prime_UTR	28033166	28033553	.	+	.	Parent=Os01t0681050-00
Chr01	irgsp1_rep	five_prime_UTR	28033885	28034156	.	+	.	Parent=Os01t0681050-00
Chr01	irgsp1_rep	CDS	28034157	28034165	.	+	0	Parent=Os01t0681050-00
Chr01	irgsp1_rep	CDS	28034421	28034491	.	+	0	Parent=Os01t0681050-00
Chr01	irgsp1_rep	CDS	28034582	28034777	.	+	1	Parent=Os01t0681050-00
Chr01	irgsp1_rep	three_prime_UTR	28034778	28035196	.	+	.	Parent=Os01t0681050-00
Chr01	irgsp1_rep	mRNA	28054939	28060593	.	+	.	ID=Os01t0681100-01;Name=Os01t0681100-01;Locus_id=Os01g0681100;Oryzabase Gene Symbol Synonym(s)=OsDRP1B%2C DRP1B;Oryzabase Gene Name Synonym(s)=dynamin-related protein 1B;Note=Similar to Dynamin-related protein 1B (Dynamin-like protein B).;Transcript_evidence=AK072230 (DDBJ%2C Best hit);ORF_evidence=NP_001151777.1 (RefSeq);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Dynamin%2C GTPase domain (IPR001401),Dynamin%2C GTPase region%2C conserved site (IPR019762),Dynamin (IPR022812);NIAS_FLcDNA=J023002D21;Oryzabase=21596;Expression=AK072230;TENOR=Os01t0681100-01;KEGG=Os01t0681100-01 (EC:3.6.5.5)
Chr01	irgsp1_rep	five_prime_UTR	28054939	28055190	.	+	.	Parent=Os01t0681100-01
Chr01	irgsp1_rep	CDS	28055191	28055319	.	+	0	Parent=Os01t0681100-01
Chr01	irgsp1_rep	CDS	28055657	28055720	.	+	0	Parent=Os01t0681100-01
Chr01	irgsp1_rep	CDS	28055813	28055917	.	+	2	Parent=Os01t0681100-01
Chr01	irgsp1_rep	CDS	28056279	28056380	.	+	2	Parent=Os01t0681100-01
Chr01	irgsp1_rep	CDS	28056713	28056763	.	+	2	Parent=Os01t0681100-01
Chr01	irgsp1_rep	CDS	28056853	28056956	.	+	2	Parent=Os01t0681100-01
Chr01	irgsp1_rep	three_prime_UTR	28056957	28057524	.	+	.	Parent=Os01t0681100-01
Chr01	irgsp1_rep	three_prime_UTR	28057655	28057849	.	+	.	Parent=Os01t0681100-01
Chr01	irgsp1_rep	three_prime_UTR	28057949	28058068	.	+	.	Parent=Os01t0681100-01
Chr01	irgsp1_rep	three_prime_UTR	28058334	28058404	.	+	.	Parent=Os01t0681100-01
Chr01	irgsp1_rep	three_prime_UTR	28058529	28058754	.	+	.	Parent=Os01t0681100-01
Chr01	irgsp1_rep	three_prime_UTR	28058851	28058901	.	+	.	Parent=Os01t0681100-01
Chr01	irgsp1_rep	three_prime_UTR	28059249	28059477	.	+	.	Parent=Os01t0681100-01
Chr01	irgsp1_rep	three_prime_UTR	28059700	28059839	.	+	.	Parent=Os01t0681100-01
Chr01	irgsp1_rep	three_prime_UTR	28060313	28060593	.	+	.	Parent=Os01t0681100-01
Chr01	irgsp1_rep	mRNA	28055083	28060452	.	-	.	ID=Os01t0681150-00;Name=Os01t0681150-00;Locus_id=Os01g0681150;Note=Hypothetical protein.;Transcript_evidence=tplb0034e16 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0681150-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	28060322	28060452	.	-	.	Parent=Os01t0681150-00
Chr01	irgsp1_rep	five_prime_UTR	28059704	28059847	.	-	.	Parent=Os01t0681150-00
Chr01	irgsp1_rep	five_prime_UTR	28059178	28059484	.	-	.	Parent=Os01t0681150-00
Chr01	irgsp1_rep	five_prime_UTR	28058516	28058743	.	-	.	Parent=Os01t0681150-00
Chr01	irgsp1_rep	five_prime_UTR	28058346	28058393	.	-	.	Parent=Os01t0681150-00
Chr01	irgsp1_rep	five_prime_UTR	28057947	28058076	.	-	.	Parent=Os01t0681150-00
Chr01	irgsp1_rep	five_prime_UTR	28057638	28057847	.	-	.	Parent=Os01t0681150-00
Chr01	irgsp1_rep	five_prime_UTR	28057470	28057516	.	-	.	Parent=Os01t0681150-00
Chr01	irgsp1_rep	five_prime_UTR	28057089	28057233	.	-	.	Parent=Os01t0681150-00
Chr01	irgsp1_rep	five_prime_UTR	28056721	28056780	.	-	.	Parent=Os01t0681150-00
Chr01	irgsp1_rep	five_prime_UTR	28056329	28056391	.	-	.	Parent=Os01t0681150-00
Chr01	irgsp1_rep	CDS	28056256	28056328	.	-	0	Parent=Os01t0681150-00
Chr01	irgsp1_rep	CDS	28055805	28055893	.	-	2	Parent=Os01t0681150-00
Chr01	irgsp1_rep	CDS	28055654	28055715	.	-	0	Parent=Os01t0681150-00
Chr01	irgsp1_rep	CDS	28055121	28055316	.	-	1	Parent=Os01t0681150-00
Chr01	irgsp1_rep	three_prime_UTR	28055083	28055120	.	-	.	Parent=Os01t0681150-00
Chr01	irgsp1_rep	mRNA	28061734	28067159	.	-	.	ID=Os01t0681200-01;Name=Os01t0681200-01;Locus_id=Os01g0681200;CGSNL Gene Symbol=LACS4;CGSNL Gene Name=LONG-CHAIN ACYL-COA SYNTHETASE 4;Oryzabase Gene Symbol Synonym(s)=OsLACS4;Oryzabase Gene Name Synonym(s)=long-chain acyl-CoA synthetase 4;Note=Similar to Acyl-CoA synthetase (EC 6.2.1.3).;Transcript_evidence=AK066286 (DDBJ%2C Best hit);ORF_evidence=Q2I824 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873),AMP-binding%2C conserved site (IPR020845);NIAS_FLcDNA=J013065D12;Oryzabase=23602;Expression=AK066286;TENOR=Os01t0681200-01;KEGG=Os01t0681200-01 (EC:6.2.1.3)
Chr01	irgsp1_rep	five_prime_UTR	28066988	28067159	.	-	.	Parent=Os01t0681200-01
Chr01	irgsp1_rep	CDS	28066818	28066987	.	-	0	Parent=Os01t0681200-01
Chr01	irgsp1_rep	CDS	28066575	28066638	.	-	1	Parent=Os01t0681200-01
Chr01	irgsp1_rep	CDS	28066366	28066455	.	-	0	Parent=Os01t0681200-01
Chr01	irgsp1_rep	CDS	28066206	28066262	.	-	0	Parent=Os01t0681200-01
Chr01	irgsp1_rep	CDS	28065720	28065768	.	-	0	Parent=Os01t0681200-01
Chr01	irgsp1_rep	CDS	28065478	28065554	.	-	2	Parent=Os01t0681200-01
Chr01	irgsp1_rep	CDS	28065047	28065086	.	-	0	Parent=Os01t0681200-01
Chr01	irgsp1_rep	CDS	28064869	28064963	.	-	2	Parent=Os01t0681200-01
Chr01	irgsp1_rep	CDS	28064443	28064610	.	-	0	Parent=Os01t0681200-01
Chr01	irgsp1_rep	CDS	28064248	28064358	.	-	0	Parent=Os01t0681200-01
Chr01	irgsp1_rep	CDS	28064024	28064111	.	-	0	Parent=Os01t0681200-01
Chr01	irgsp1_rep	CDS	28063838	28063904	.	-	2	Parent=Os01t0681200-01
Chr01	irgsp1_rep	CDS	28063666	28063741	.	-	1	Parent=Os01t0681200-01
Chr01	irgsp1_rep	CDS	28063448	28063565	.	-	0	Parent=Os01t0681200-01
Chr01	irgsp1_rep	CDS	28063089	28063337	.	-	2	Parent=Os01t0681200-01
Chr01	irgsp1_rep	CDS	28062748	28062887	.	-	2	Parent=Os01t0681200-01
Chr01	irgsp1_rep	CDS	28062452	28062634	.	-	0	Parent=Os01t0681200-01
Chr01	irgsp1_rep	CDS	28062245	28062364	.	-	0	Parent=Os01t0681200-01
Chr01	irgsp1_rep	CDS	28062109	28062144	.	-	0	Parent=Os01t0681200-01
Chr01	irgsp1_rep	three_prime_UTR	28061734	28062108	.	-	.	Parent=Os01t0681200-01
Chr01	irgsp1_rep	mRNA	28061809	28067060	.	-	.	ID=Os01t0681200-02;Name=Os01t0681200-02;Locus_id=Os01g0681200;CGSNL Gene Symbol=LACS4;CGSNL Gene Name=LONG-CHAIN ACYL-COA SYNTHETASE 4;Oryzabase Gene Symbol Synonym(s)=OsLACS4;Oryzabase Gene Name Synonym(s)=long-chain acyl-CoA synthetase 4;Note=Similar to Acyl-CoA synthetase (EC 6.2.1.3).;Transcript_evidence=AK101149 (DDBJ%2C Best hit);ORF_evidence=Q2I824 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873),AMP-binding%2C conserved site (IPR020845);NIAS_FLcDNA=J033027A14;Oryzabase=23602;Expression=AK101149;TENOR=Os01t0681200-02;KEGG=Os01t0681200-02 (EC:6.2.1.3)
Chr01	irgsp1_rep	five_prime_UTR	28066988	28067060	.	-	.	Parent=Os01t0681200-02
Chr01	irgsp1_rep	CDS	28066818	28066987	.	-	0	Parent=Os01t0681200-02
Chr01	irgsp1_rep	CDS	28066575	28066638	.	-	1	Parent=Os01t0681200-02
Chr01	irgsp1_rep	CDS	28066366	28066455	.	-	0	Parent=Os01t0681200-02
Chr01	irgsp1_rep	CDS	28066206	28066262	.	-	0	Parent=Os01t0681200-02
Chr01	irgsp1_rep	CDS	28065720	28065768	.	-	0	Parent=Os01t0681200-02
Chr01	irgsp1_rep	CDS	28065478	28065554	.	-	2	Parent=Os01t0681200-02
Chr01	irgsp1_rep	CDS	28065047	28065086	.	-	0	Parent=Os01t0681200-02
Chr01	irgsp1_rep	CDS	28064869	28064963	.	-	2	Parent=Os01t0681200-02
Chr01	irgsp1_rep	CDS	28064443	28064610	.	-	0	Parent=Os01t0681200-02
Chr01	irgsp1_rep	CDS	28064248	28064358	.	-	0	Parent=Os01t0681200-02
Chr01	irgsp1_rep	CDS	28064024	28064111	.	-	0	Parent=Os01t0681200-02
Chr01	irgsp1_rep	CDS	28063838	28063904	.	-	2	Parent=Os01t0681200-02
Chr01	irgsp1_rep	CDS	28063666	28063741	.	-	1	Parent=Os01t0681200-02
Chr01	irgsp1_rep	CDS	28063448	28063565	.	-	0	Parent=Os01t0681200-02
Chr01	irgsp1_rep	CDS	28063089	28063337	.	-	2	Parent=Os01t0681200-02
Chr01	irgsp1_rep	CDS	28062748	28062887	.	-	2	Parent=Os01t0681200-02
Chr01	irgsp1_rep	CDS	28062452	28062634	.	-	0	Parent=Os01t0681200-02
Chr01	irgsp1_rep	CDS	28062245	28062364	.	-	0	Parent=Os01t0681200-02
Chr01	irgsp1_rep	CDS	28062109	28062144	.	-	0	Parent=Os01t0681200-02
Chr01	irgsp1_rep	three_prime_UTR	28061809	28062108	.	-	.	Parent=Os01t0681200-02
Chr01	irgsp1_rep	mRNA	28066706	28067374	.	+	.	ID=Os01t0681332-01;Name=Os01t0681332-01;Locus_id=Os01g0681332;Note=Hypothetical gene.;Transcript_evidence=AK288104 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J075197C21;TENOR=Os01t0681332-01;KEGG=Os01t0681332-01
Chr01	irgsp1_rep	CDS	28066706	28067062	.	+	0	Parent=Os01t0681332-01
Chr01	irgsp1_rep	three_prime_UTR	28067063	28067374	.	+	.	Parent=Os01t0681332-01
Chr01	irgsp1_rep	mRNA	28070715	28076428	.	-	.	ID=Os01t0681400-01;Name=Os01t0681400-01;Locus_id=Os01g0681400;RAP-DB Gene Symbol Synonym(s)=ATG6A%2C OsATG6a;RAP-DB Gene Name Synonym(s)=AUTOPHAGY ASSOCIATED GENE 6A%2C autophagy 6a;CGSNL Gene Symbol=ATG6A;CGSNL Gene Name=AUTOPHAGY ASSOCIATED GENE 6A;Oryzabase Gene Symbol Synonym(s)=OsATG6a;Oryzabase Gene Name Synonym(s)=autophagy 6a;Note=ATG6/Beclin-1 protein%2C Abiotic stresses (heat%2Ccold and drought) and hormone (abscisic acid) response;Transcript_evidence=AK101033;ORF_evidence=Q0JKD4;GO=Biological Process: autophagy (GO:0006914);InterPro=Atg6/Beclin (IPR007243);NIAS_FLcDNA=J023150N19;Manual Curation=March 7%2C 2017;Literature_PMID=22930426;Oryzabase=9640;Expression=AK101033;TENOR=Os01t0681400-01;KEGG=Os01t0681400-01
Chr01	irgsp1_rep	five_prime_UTR	28076221	28076428	.	-	.	Parent=Os01t0681400-01
Chr01	irgsp1_rep	CDS	28076064	28076220	.	-	0	Parent=Os01t0681400-01
Chr01	irgsp1_rep	CDS	28074964	28075313	.	-	2	Parent=Os01t0681400-01
Chr01	irgsp1_rep	CDS	28074576	28074746	.	-	0	Parent=Os01t0681400-01
Chr01	irgsp1_rep	CDS	28074092	28074216	.	-	0	Parent=Os01t0681400-01
Chr01	irgsp1_rep	CDS	28073660	28073708	.	-	1	Parent=Os01t0681400-01
Chr01	irgsp1_rep	CDS	28072811	28072969	.	-	0	Parent=Os01t0681400-01
Chr01	irgsp1_rep	CDS	28072648	28072733	.	-	0	Parent=Os01t0681400-01
Chr01	irgsp1_rep	CDS	28072067	28072138	.	-	1	Parent=Os01t0681400-01
Chr01	irgsp1_rep	CDS	28071602	28071751	.	-	1	Parent=Os01t0681400-01
Chr01	irgsp1_rep	CDS	28071122	28071305	.	-	1	Parent=Os01t0681400-01
Chr01	irgsp1_rep	three_prime_UTR	28070715	28071121	.	-	.	Parent=Os01t0681400-01
Chr01	irgsp1_rep	mRNA	28080392	28082062	.	+	.	ID=Os01t0681600-01;Name=Os01t0681600-01;Locus_id=Os01g0681600;Note=Hypothetical conserved gene.;Transcript_evidence=AK066431 (DDBJ%2C Best hit);ORF_evidence=A2WTT8 (UniProt);NIAS_FLcDNA=J013064N11;Expression=AK066431;TENOR=Os01t0681600-01;KEGG=Os01t0681600-01
Chr01	irgsp1_rep	five_prime_UTR	28080392	28080392	.	+	.	Parent=Os01t0681600-01
Chr01	irgsp1_rep	CDS	28080393	28081129	.	+	0	Parent=Os01t0681600-01
Chr01	irgsp1_rep	CDS	28081627	28082062	.	+	1	Parent=Os01t0681600-01
Chr01	irgsp1_rep	mRNA	28080407	28083298	.	+	.	ID=Os01t0681600-02;Name=Os01t0681600-02;Locus_id=Os01g0681600;Note=Similar to Splicing factor 3A subunit 3 (Spliceosome associated protein 61) (SAP 61) (SF3a60).;Transcript_evidence=AK067869 (DDBJ%2C Best hit);ORF_evidence=A2WTT8 (UniProt);NIAS_FLcDNA=J013128I02;Expression=AK067869;TENOR=Os01t0681600-02;KEGG=Os01t0681600-02
Chr01	irgsp1_rep	five_prime_UTR	28080407	28080500	.	+	.	Parent=Os01t0681600-02
Chr01	irgsp1_rep	CDS	28080501	28081129	.	+	0	Parent=Os01t0681600-02
Chr01	irgsp1_rep	CDS	28081627	28082170	.	+	1	Parent=Os01t0681600-02
Chr01	irgsp1_rep	CDS	28082982	28083143	.	+	0	Parent=Os01t0681600-02
Chr01	irgsp1_rep	three_prime_UTR	28083144	28083298	.	+	.	Parent=Os01t0681600-02
Chr01	irgsp1_rep	mRNA	28080881	28083179	.	-	.	ID=Os01t0681650-00;Name=Os01t0681650-00;Locus_id=Os01g0681650;Note=Hypothetical gene.;Transcript_evidence=BT017460 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0681650-00
Chr01	irgsp1_rep	five_prime_UTR	28082879	28083179	.	-	.	Parent=Os01t0681650-00
Chr01	irgsp1_rep	five_prime_UTR	28081717	28082131	.	-	.	Parent=Os01t0681650-00
Chr01	irgsp1_rep	CDS	28081647	28081716	.	-	0	Parent=Os01t0681650-00
Chr01	irgsp1_rep	CDS	28080881	28081153	.	-	2	Parent=Os01t0681650-00
Chr01	irgsp1_rep	mRNA	28085781	28086459	.	-	.	ID=Os01t0681700-00;Name=Os01t0681700-00;Locus_id=Os01g0681700;Note=Hypothetical conserved gene.;Transcript_evidence=CT834960 (DDBJ%2C Best hit);ORF_evidence=NP_001043882.2 (RefSeq);TENOR=Os01t0681700-00;KEGG=Os01t0681700-00
Chr01	irgsp1_rep	five_prime_UTR	28086410	28086459	.	-	.	Parent=Os01t0681700-00
Chr01	irgsp1_rep	CDS	28086059	28086409	.	-	0	Parent=Os01t0681700-00
Chr01	irgsp1_rep	three_prime_UTR	28085781	28086058	.	-	.	Parent=Os01t0681700-00
Chr01	irgsp1_rep	mRNA	28088399	28089095	.	-	.	ID=Os01t0681800-01;Name=Os01t0681800-01;Locus_id=Os01g0681800;Note=Conserved hypothetical protein.;Transcript_evidence=AK066764 (DDBJ%2C Best hit);ORF_evidence=A2WTU0 (UniProt);NIAS_FLcDNA=J013075M10;Expression=AK066764;TENOR=Os01t0681800-01;KEGG=Os01t0681800-01
Chr01	irgsp1_rep	five_prime_UTR	28088981	28089095	.	-	.	Parent=Os01t0681800-01
Chr01	irgsp1_rep	CDS	28088591	28088980	.	-	0	Parent=Os01t0681800-01
Chr01	irgsp1_rep	three_prime_UTR	28088399	28088590	.	-	.	Parent=Os01t0681800-01
Chr01	irgsp1_rep	mRNA	28091213	28102914	.	-	.	ID=Os01t0681900-01;Name=Os01t0681900-01;Locus_id=Os01g0681900;RAP-DB Gene Symbol Synonym(s)=OsGOGAT1%2C NADH-GOGAT1;RAP-DB Gene Name Synonym(s)=Glutamate synthetase 1%2C NADH-dependent glutamate synthase1;CGSNL Gene Symbol=GLT1;CGSNL Gene Name=NADH-DEPENDENT GLUTAMATE SYNTHASE 1;Oryzabase Gene Symbol Synonym(s)=OsGLT1%2C OsNADH-GOGAT1%2C NADH-GOGAT1%2C OsNADH-GOGAT%2C GOGAT%2C NADH-GOGAT%2C OsGOGAT1%2C GOGAT1;Oryzabase Gene Name Synonym(s)=NADH-glutamate synthase 1%2C glutamate synthase%2C NADH-glutamate synthase%2C NADH-Glu synthase%2C Glutamate synthase (NADPH) small chain%2C NADH-dependent glutamate synthase1%2C NADH-dependent glutamate synthase 1;Note=Glutamate synthetase%2C Primary ammonium ions assimilation in seedling roots%2C Development of tillers%2C Tolerance to nitrogen-limitation;Transcript_evidence=AK241610 (truncated),AK105755 (truncated),AB008845 (Sasanishiki);ORF_evidence=Q0JKD0;GO=Biological Process: glutamate biosynthetic process (GO:0006537),Biological Process: nitrogen compound metabolic process (GO:0006807),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: iron ion binding (GO:0005506),Molecular Function: FMN binding (GO:0010181),Molecular Function: glutamate synthase activity (GO:0015930),Molecular Function: glutamate synthase (NADH) activity (GO:0016040),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-NH2 group of donors (GO:0016638),Molecular Function: oxidoreductase activity%2C acting on the CH-NH2 group of donors%2C NAD or NADP as acceptor (GO:0016639),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=Nucleophile aminohydrolases%2C N-terminal (IPR029055),Aldolase-type TIM barrel (IPR013785),Glutamate synthase%2C alpha subunit%2C C-terminal domain superfamily (IPR036485),Alpha-helical ferredoxin (IPR009051),FAD/NAD(P)-binding domain superfamily (IPR036188),Glutamate synthase%2C eukaryotic (IPR012220),Glutamate synthase%2C NADH/NADPH%2C small subunit 1 (IPR006005),Glutamine amidotransferase type 2 domain (IPR017932),Glutamate synthase%2C central-N (IPR006982),Glutamate synthase domain (IPR002932),Glutamate synthase%2C alpha subunit%2C C-terminal (IPR002489),Dihydroprymidine dehydrogenase domain II (IPR028261),FAD/NAD(P)-binding domain (IPR023753);NIAS_FLcDNA=J065185O03 (truncated),001-202-C08 (truncated);Manual Curation=May 7%2C 2020;Literature_PMID=32369636,20213442,9748637;Oryzabase=9311;Expression=AK105755;TENOR=Os01t0681900-01,Os01t0682001-01;KEGG=Os01t0682001-01 (EC:1.4.1.13%2C EC:1.4.1.14);B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	28102684	28102914	.	-	.	Parent=Os01t0681900-01
Chr01	irgsp1_rep	five_prime_UTR	28102050	28102079	.	-	.	Parent=Os01t0681900-01
Chr01	irgsp1_rep	CDS	28101702	28102049	.	-	0	Parent=Os01t0681900-01
Chr01	irgsp1_rep	CDS	28101507	28101626	.	-	0	Parent=Os01t0681900-01
Chr01	irgsp1_rep	CDS	28101303	28101416	.	-	0	Parent=Os01t0681900-01
Chr01	irgsp1_rep	CDS	28101066	28101218	.	-	0	Parent=Os01t0681900-01
Chr01	irgsp1_rep	CDS	28100880	28100980	.	-	0	Parent=Os01t0681900-01
Chr01	irgsp1_rep	CDS	28100390	28100486	.	-	1	Parent=Os01t0681900-01
Chr01	irgsp1_rep	CDS	28099795	28099904	.	-	0	Parent=Os01t0681900-01
Chr01	irgsp1_rep	CDS	28099559	28099662	.	-	1	Parent=Os01t0681900-01
Chr01	irgsp1_rep	CDS	28099273	28099452	.	-	2	Parent=Os01t0681900-01
Chr01	irgsp1_rep	CDS	28098847	28099190	.	-	2	Parent=Os01t0681900-01
Chr01	irgsp1_rep	CDS	28098659	28098723	.	-	0	Parent=Os01t0681900-01
Chr01	irgsp1_rep	CDS	28098105	28098574	.	-	1	Parent=Os01t0681900-01
Chr01	irgsp1_rep	CDS	28096937	28097806	.	-	2	Parent=Os01t0681900-01
Chr01	irgsp1_rep	CDS	28096254	28096408	.	-	2	Parent=Os01t0681900-01
Chr01	irgsp1_rep	CDS	28095978	28096139	.	-	0	Parent=Os01t0681900-01
Chr01	irgsp1_rep	CDS	28094228	28095757	.	-	0	Parent=Os01t0681900-01
Chr01	irgsp1_rep	CDS	28093776	28093994	.	-	0	Parent=Os01t0681900-01
Chr01	irgsp1_rep	CDS	28093111	28093385	.	-	0	Parent=Os01t0681900-01
Chr01	irgsp1_rep	CDS	28092690	28092995	.	-	1	Parent=Os01t0681900-01
Chr01	irgsp1_rep	CDS	28092273	28092540	.	-	1	Parent=Os01t0681900-01
Chr01	irgsp1_rep	CDS	28091845	28092099	.	-	0	Parent=Os01t0681900-01
Chr01	irgsp1_rep	CDS	28091488	28091745	.	-	0	Parent=Os01t0681900-01
Chr01	irgsp1_rep	three_prime_UTR	28091213	28091487	.	-	.	Parent=Os01t0681900-01
Chr01	irgsp1_rep	mRNA	28118327	28119161	.	-	.	ID=Os01t0682200-00;Name=Os01t0682200-00;Locus_id=Os01g0682200;Note=Similar to predicted protein.;Transcript_evidence=BT086713 (DDBJ);ORF_evidence=NP_974810.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021),Cellular Component: GPI-anchor transamidase complex (GO:0042765);InterPro=Gaa1-like%2C GPI transamidase component (IPR007246);TENOR=Os01t0682200-00;KEGG=Os01t0682200-00
Chr01	irgsp1_rep	CDS	28118397	28119161	.	-	0	Parent=Os01t0682200-00
Chr01	irgsp1_rep	three_prime_UTR	28118327	28118396	.	-	.	Parent=Os01t0682200-00
Chr01	irgsp1_rep	mRNA	28126575	28130263	.	+	.	ID=Os01t0682500-01;Name=Os01t0682500-01;Locus_id=Os01g0682500;Note=Similar to Protein Kinase C630.09c.;Transcript_evidence=AK104091 (DDBJ%2C Best hit),AK068815 (DDBJ%2C Best hit);ORF_evidence=B4FYT5 (UniProt);NIAS_FLcDNA=001-031-D08,J013158I10;Expression=AK104091;TENOR=Os01t0682500-01;KEGG=Os01t0682500-01
Chr01	irgsp1_rep	five_prime_UTR	28126575	28126643	.	+	.	Parent=Os01t0682500-01
Chr01	irgsp1_rep	CDS	28126644	28126800	.	+	0	Parent=Os01t0682500-01
Chr01	irgsp1_rep	CDS	28127344	28127702	.	+	2	Parent=Os01t0682500-01
Chr01	irgsp1_rep	CDS	28128056	28128135	.	+	0	Parent=Os01t0682500-01
Chr01	irgsp1_rep	CDS	28128218	28128269	.	+	1	Parent=Os01t0682500-01
Chr01	irgsp1_rep	CDS	28128363	28128404	.	+	0	Parent=Os01t0682500-01
Chr01	irgsp1_rep	CDS	28128492	28128570	.	+	0	Parent=Os01t0682500-01
Chr01	irgsp1_rep	CDS	28128733	28128764	.	+	2	Parent=Os01t0682500-01
Chr01	irgsp1_rep	CDS	28128844	28128912	.	+	0	Parent=Os01t0682500-01
Chr01	irgsp1_rep	CDS	28128999	28129069	.	+	0	Parent=Os01t0682500-01
Chr01	irgsp1_rep	CDS	28129150	28129270	.	+	1	Parent=Os01t0682500-01
Chr01	irgsp1_rep	CDS	28129359	28129409	.	+	0	Parent=Os01t0682500-01
Chr01	irgsp1_rep	CDS	28129917	28130060	.	+	0	Parent=Os01t0682500-01
Chr01	irgsp1_rep	three_prime_UTR	28130061	28130263	.	+	.	Parent=Os01t0682500-01
Chr01	irgsp1_rep	mRNA	28130392	28130464	.	+	.	ID=Os01t0682601-00;Name=Os01t0682601-00;Locus_id=Os01g0682601;Note=Non-protein coding transcript.;Transcript_evidence=X06284 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0682601-00
Chr01	irgsp1_rep	exon	28130392	28130464	.	+	.	Parent=Os01t0682601-00
Chr01	irgsp1_rep	mRNA	28130510	28132559	.	-	.	ID=Os01t0682700-01;Name=Os01t0682700-01;Locus_id=Os01g0682700;Note=Conserved hypothetical protein.;Transcript_evidence=AK107246 (DDBJ%2C Best hit);ORF_evidence=Q8H4Z9 (UniProt);NIAS_FLcDNA=002-125-F10;TENOR=Os01t0682700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	28131994	28132559	.	-	.	Parent=Os01t0682700-01
Chr01	irgsp1_rep	CDS	28131760	28131993	.	-	0	Parent=Os01t0682700-01
Chr01	irgsp1_rep	three_prime_UTR	28130510	28131759	.	-	.	Parent=Os01t0682700-01
Chr01	irgsp1_rep	mRNA	28136367	28143339	.	+	.	ID=Os01t0683100-01;Name=Os01t0683100-01;Locus_id=Os01g0683100;Oryzabase Gene Symbol Synonym(s)=OsKTN60;Oryzabase Gene Name Synonym(s)=katanin P60%2C Katanin catalytic subunit P60;Note=Similar to Katanin p60 ATPase-containing subunit (EC 3.6.4.3) (Katanin p60 subunit) (p60 katanin) (Atp60) (CAD ATPase) (Katanin 1) (BOTERO1 protein) (ECTOPIC ROOT HAIR 3 protein) (FAT ROOT protein) (FRAGILE FIBER 2 protein) (AtAAA1).;Transcript_evidence=AK069248 (DDBJ%2C Best hit);ORF_evidence=NP_001149810.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960),Vps4 oligomerisation%2C C-terminal (IPR015415);NIAS_FLcDNA=J023014K18;Oryzabase=15630;Expression=AK069248;TENOR=Os01t0683100-01;KEGG=Os01t0683100-01 (EC:3.6.4.3)
Chr01	irgsp1_rep	five_prime_UTR	28136367	28136491	.	+	.	Parent=Os01t0683100-01
Chr01	irgsp1_rep	CDS	28136492	28136610	.	+	0	Parent=Os01t0683100-01
Chr01	irgsp1_rep	CDS	28137419	28137887	.	+	1	Parent=Os01t0683100-01
Chr01	irgsp1_rep	CDS	28140347	28140544	.	+	0	Parent=Os01t0683100-01
Chr01	irgsp1_rep	CDS	28140910	28141154	.	+	0	Parent=Os01t0683100-01
Chr01	irgsp1_rep	CDS	28141491	28141649	.	+	1	Parent=Os01t0683100-01
Chr01	irgsp1_rep	CDS	28142233	28142320	.	+	1	Parent=Os01t0683100-01
Chr01	irgsp1_rep	CDS	28142725	28143006	.	+	0	Parent=Os01t0683100-01
Chr01	irgsp1_rep	three_prime_UTR	28143007	28143339	.	+	.	Parent=Os01t0683100-01
Chr01	irgsp1_rep	mRNA	28137679	28143339	.	+	.	ID=Os01t0683100-02;Name=Os01t0683100-02;Locus_id=Os01g0683100;Oryzabase Gene Symbol Synonym(s)=OsKTN60;Oryzabase Gene Name Synonym(s)=katanin P60%2C Katanin catalytic subunit P60;Note=Similar to LUE1 protein.;Transcript_evidence=AK059564 (DDBJ%2C Best hit);ORF_evidence=NP_001149810.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960),Vps4 oligomerisation%2C C-terminal (IPR015415);NIAS_FLcDNA=001-029-H06;Oryzabase=15630;Expression=AK059564;TENOR=Os01t0683100-02;KEGG=Os01t0683100-02 (EC:3.6.4.3)
Chr01	irgsp1_rep	five_prime_UTR	28137679	28137680	.	+	.	Parent=Os01t0683100-02
Chr01	irgsp1_rep	CDS	28137681	28137887	.	+	0	Parent=Os01t0683100-02
Chr01	irgsp1_rep	CDS	28140347	28140544	.	+	0	Parent=Os01t0683100-02
Chr01	irgsp1_rep	CDS	28140910	28141154	.	+	0	Parent=Os01t0683100-02
Chr01	irgsp1_rep	CDS	28141491	28141649	.	+	1	Parent=Os01t0683100-02
Chr01	irgsp1_rep	CDS	28142233	28142320	.	+	1	Parent=Os01t0683100-02
Chr01	irgsp1_rep	CDS	28142725	28143006	.	+	0	Parent=Os01t0683100-02
Chr01	irgsp1_rep	three_prime_UTR	28143007	28143339	.	+	.	Parent=Os01t0683100-02
Chr01	irgsp1_rep	mRNA	28144532	28144599	.	-	.	ID=Os01t0683250-00;Name=Os01t0683250-00;Locus_id=Os01g0683250;Note=Non-protein coding transcript.;Transcript_evidence=X06284 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0683250-00
Chr01	irgsp1_rep	exon	28144532	28144599	.	-	.	Parent=Os01t0683250-00
Chr01	irgsp1_rep	mRNA	28161732	28166115	.	+	.	ID=Os01t0683400-01;Name=Os01t0683400-01;Locus_id=Os01g0683400;CGSNL Gene Symbol=ORC4;CGSNL Gene Name=ORIGIN RECOGNITION COMPLEX 4;Oryzabase Gene Symbol Synonym(s)=OsORC4;Oryzabase Gene Name Synonym(s)=origin recognition complex subunit 4;Note=Similar to Origin recognition complex 4.;Transcript_evidence=AK102997 (DDBJ%2C Best hit);ORF_evidence=Q7Y0X0 (UniProt);GO=Biological Process: DNA replication (GO:0006260),Cellular Component: origin recognition complex (GO:0000808),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Origin recognition complex%2C subunit 4 (IPR016527);NIAS_FLcDNA=J033116E22;Oryzabase=9124;Expression=AK102997;TENOR=Os01t0683400-01;KEGG=Os01t0683400-01
Chr01	irgsp1_rep	five_prime_UTR	28161732	28161780	.	+	.	Parent=Os01t0683400-01
Chr01	irgsp1_rep	CDS	28161781	28161902	.	+	0	Parent=Os01t0683400-01
Chr01	irgsp1_rep	CDS	28161985	28162210	.	+	1	Parent=Os01t0683400-01
Chr01	irgsp1_rep	CDS	28162564	28162620	.	+	0	Parent=Os01t0683400-01
Chr01	irgsp1_rep	CDS	28162916	28162963	.	+	0	Parent=Os01t0683400-01
Chr01	irgsp1_rep	CDS	28163141	28163191	.	+	0	Parent=Os01t0683400-01
Chr01	irgsp1_rep	CDS	28163271	28163314	.	+	0	Parent=Os01t0683400-01
Chr01	irgsp1_rep	CDS	28163415	28163478	.	+	1	Parent=Os01t0683400-01
Chr01	irgsp1_rep	CDS	28163669	28163755	.	+	0	Parent=Os01t0683400-01
Chr01	irgsp1_rep	CDS	28164046	28164137	.	+	0	Parent=Os01t0683400-01
Chr01	irgsp1_rep	CDS	28164231	28164312	.	+	1	Parent=Os01t0683400-01
Chr01	irgsp1_rep	CDS	28164842	28164927	.	+	0	Parent=Os01t0683400-01
Chr01	irgsp1_rep	CDS	28165025	28165134	.	+	1	Parent=Os01t0683400-01
Chr01	irgsp1_rep	CDS	28165291	28165383	.	+	2	Parent=Os01t0683400-01
Chr01	irgsp1_rep	CDS	28165459	28165523	.	+	2	Parent=Os01t0683400-01
Chr01	irgsp1_rep	CDS	28165618	28165761	.	+	0	Parent=Os01t0683400-01
Chr01	irgsp1_rep	CDS	28165898	28165939	.	+	0	Parent=Os01t0683400-01
Chr01	irgsp1_rep	three_prime_UTR	28165940	28166115	.	+	.	Parent=Os01t0683400-01
Chr01	irgsp1_rep	mRNA	28166410	28167212	.	-	.	ID=Os01t0683500-01;Name=Os01t0683500-01;Locus_id=Os01g0683500;CGSNL Gene Symbol=SUI3;CGSNL Gene Name=SHORTENED UPPERMOST INTERNODE 3;Oryzabase Gene Symbol Synonym(s)=OsSUI3;Oryzabase Gene Name Synonym(s)=Shortened Uppermost Internode 3;Note=Non-protein coding transcript.;Transcript_evidence=AK241263 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065132A01;Oryzabase=19640;TENOR=Os01t0683500-01
Chr01	irgsp1_rep	exon	28166410	28167212	.	-	.	Parent=Os01t0683500-01
Chr01	irgsp1_rep	mRNA	28166842	28172082	.	+	.	ID=Os01t0683525-00;Name=Os01t0683525-00;Locus_id=Os01g0683525;Note=Non-protein coding transcript.;Transcript_evidence=tplb0061m12 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os01t0683525-00
Chr01	irgsp1_rep	exon	28166842	28166926	.	+	.	Parent=Os01t0683525-00
Chr01	irgsp1_rep	exon	28167068	28167323	.	+	.	Parent=Os01t0683525-00
Chr01	irgsp1_rep	exon	28168389	28168481	.	+	.	Parent=Os01t0683525-00
Chr01	irgsp1_rep	exon	28169054	28169125	.	+	.	Parent=Os01t0683525-00
Chr01	irgsp1_rep	exon	28169240	28169376	.	+	.	Parent=Os01t0683525-00
Chr01	irgsp1_rep	exon	28169767	28169943	.	+	.	Parent=Os01t0683525-00
Chr01	irgsp1_rep	exon	28170657	28170748	.	+	.	Parent=Os01t0683525-00
Chr01	irgsp1_rep	exon	28171964	28172082	.	+	.	Parent=Os01t0683525-00
Chr01	irgsp1_rep	mRNA	28168418	28172563	.	-	.	ID=Os01t0683550-00;Name=Os01t0683550-00;Locus_id=Os01g0683550;Note=Similar to phosphatidylserine synthase 2.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001149567.1 (RefSeq);GO=Biological Process: phosphatidylserine biosynthetic process (GO:0006659);InterPro=Phosphatidyl serine synthase (IPR004277);TENOR=Os01t0683550-00;KEGG=Os01t0683550-00 (EC:2.7.8.-)
Chr01	irgsp1_rep	CDS	28172407	28172563	.	-	0	Parent=Os01t0683550-00
Chr01	irgsp1_rep	CDS	28171980	28172172	.	-	2	Parent=Os01t0683550-00
Chr01	irgsp1_rep	CDS	28170857	28170922	.	-	1	Parent=Os01t0683550-00
Chr01	irgsp1_rep	CDS	28170650	28170709	.	-	1	Parent=Os01t0683550-00
Chr01	irgsp1_rep	CDS	28169754	28169788	.	-	1	Parent=Os01t0683550-00
Chr01	irgsp1_rep	CDS	28169461	28169540	.	-	2	Parent=Os01t0683550-00
Chr01	irgsp1_rep	CDS	28169254	28169370	.	-	0	Parent=Os01t0683550-00
Chr01	irgsp1_rep	CDS	28168418	28168483	.	-	0	Parent=Os01t0683550-00
Chr01	irgsp1_rep	mRNA	28173863	28175947	.	+	.	ID=Os01t0683600-01;Name=Os01t0683600-01;Locus_id=Os01g0683600;Note=Conserved hypothetical protein.;Transcript_evidence=AK069481 (DDBJ%2C Best hit);ORF_evidence=B8A7M0 (UniProt);NIAS_FLcDNA=J023020K18;TENOR=Os01t0683600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	28173863	28173921	.	+	.	Parent=Os01t0683600-01
Chr01	irgsp1_rep	CDS	28173922	28174161	.	+	0	Parent=Os01t0683600-01
Chr01	irgsp1_rep	three_prime_UTR	28174162	28175947	.	+	.	Parent=Os01t0683600-01
Chr01	irgsp1_rep	mRNA	28176745	28177756	.	+	.	ID=Os01t0683700-01;Name=Os01t0683700-01;Locus_id=Os01g0683700;Note=Protein of unknown function DUF599 family protein.;Transcript_evidence=AK103030 (DDBJ%2C Best hit);ORF_evidence=B9EYM7 (UniProt);InterPro=Protein of unknown function DUF599 (IPR006747);NIAS_FLcDNA=J033117C05;Expression=AK103030;TENOR=Os01t0683700-01;KEGG=Os01t0683700-01
Chr01	irgsp1_rep	five_prime_UTR	28176745	28176781	.	+	.	Parent=Os01t0683700-01
Chr01	irgsp1_rep	CDS	28176782	28176950	.	+	0	Parent=Os01t0683700-01
Chr01	irgsp1_rep	CDS	28177038	28177627	.	+	2	Parent=Os01t0683700-01
Chr01	irgsp1_rep	three_prime_UTR	28177628	28177756	.	+	.	Parent=Os01t0683700-01
Chr01	irgsp1_rep	mRNA	28176779	28177535	.	-	.	ID=Os01t0683800-00;Name=Os01t0683800-00;Locus_id=Os01g0683800;Note=Conserved hypothetical protein.;Transcript_evidence=AK375422 (DDBJ);ORF_evidence=F2EGZ5 (UniProt);TENOR=Os01t0683800-00
Chr01	irgsp1_rep	five_prime_UTR	28177310	28177535	.	-	.	Parent=Os01t0683800-00
Chr01	irgsp1_rep	CDS	28177004	28177309	.	-	0	Parent=Os01t0683800-00
Chr01	irgsp1_rep	three_prime_UTR	28176779	28177003	.	-	.	Parent=Os01t0683800-00
Chr01	irgsp1_rep	mRNA	28187891	28193349	.	+	.	ID=Os01t0684200-01;Name=Os01t0684200-01;Locus_id=Os01g0684200;Note=Conserved hypothetical protein.;Transcript_evidence=AK106529 (DDBJ%2C Best hit);ORF_evidence=B9EYM8 (UniProt);NIAS_FLcDNA=002-107-H01;TENOR=Os01t0684200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	28187891	28188162	.	+	.	Parent=Os01t0684200-01
Chr01	irgsp1_rep	CDS	28188163	28188264	.	+	0	Parent=Os01t0684200-01
Chr01	irgsp1_rep	CDS	28190237	28190515	.	+	0	Parent=Os01t0684200-01
Chr01	irgsp1_rep	three_prime_UTR	28190516	28190542	.	+	.	Parent=Os01t0684200-01
Chr01	irgsp1_rep	three_prime_UTR	28190692	28190979	.	+	.	Parent=Os01t0684200-01
Chr01	irgsp1_rep	three_prime_UTR	28191127	28191237	.	+	.	Parent=Os01t0684200-01
Chr01	irgsp1_rep	three_prime_UTR	28191557	28191647	.	+	.	Parent=Os01t0684200-01
Chr01	irgsp1_rep	three_prime_UTR	28191888	28191956	.	+	.	Parent=Os01t0684200-01
Chr01	irgsp1_rep	three_prime_UTR	28192146	28192223	.	+	.	Parent=Os01t0684200-01
Chr01	irgsp1_rep	three_prime_UTR	28192369	28192458	.	+	.	Parent=Os01t0684200-01
Chr01	irgsp1_rep	three_prime_UTR	28192629	28192679	.	+	.	Parent=Os01t0684200-01
Chr01	irgsp1_rep	three_prime_UTR	28192782	28193000	.	+	.	Parent=Os01t0684200-01
Chr01	irgsp1_rep	three_prime_UTR	28193113	28193349	.	+	.	Parent=Os01t0684200-01
Chr01	irgsp1_rep	mRNA	28193378	28196715	.	-	.	ID=Os01t0684301-01;Name=Os01t0684301-01;Locus_id=Os01g0684301;Note=Conserved hypothetical protein.;Transcript_evidence=AK288908 (DDBJ%2C Best hit);ORF_evidence=NP_001172986.1 (RefSeq);NIAS_FLcDNA=J090081D16;TENOR=Os01t0684301-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	28194402	28196715	.	-	.	Parent=Os01t0684301-01
Chr01	irgsp1_rep	CDS	28194024	28194401	.	-	0	Parent=Os01t0684301-01
Chr01	irgsp1_rep	three_prime_UTR	28193378	28194023	.	-	.	Parent=Os01t0684301-01
Chr01	irgsp1_rep	mRNA	28199717	28200167	.	+	.	ID=Os01t0684400-01;Name=Os01t0684400-01;Locus_id=Os01g0684400;Note=Non-protein coding transcript.;Transcript_evidence=AK242636 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090023E04;TENOR=Os01t0684400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	exon	28199717	28200167	.	+	.	Parent=Os01t0684400-01
Chr01	irgsp1_rep	mRNA	28206212	28210798	.	+	.	ID=Os01t0684601-00;Name=Os01t0684601-00;Locus_id=Os01g0684601;Note=Non-protein coding transcript.;Transcript_evidence=EU947038 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0684601-00
Chr01	irgsp1_rep	exon	28206212	28206305	.	+	.	Parent=Os01t0684601-00
Chr01	irgsp1_rep	exon	28210352	28210798	.	+	.	Parent=Os01t0684601-00
Chr01	irgsp1_rep	mRNA	28231419	28234854	.	+	.	ID=Os01t0684800-01;Name=Os01t0684800-01;Locus_id=Os01g0684800;Note=Protein prenyltransferase%2C alpha subunit domain containing protein.;Transcript_evidence=AK073525 (DDBJ%2C Best hit);ORF_evidence=NP_001043891.1 (RefSeq);GO=Biological Process: protein prenylation (GO:0018342),Molecular Function: protein prenyltransferase activity (GO:0008318);InterPro=Protein prenyltransferase%2C alpha subunit (IPR002088),Protein prenyltransferase (IPR008940);NIAS_FLcDNA=J033046F01;TENOR=Os01t0684800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	28231419	28231561	.	+	.	Parent=Os01t0684800-01
Chr01	irgsp1_rep	five_prime_UTR	28231704	28231958	.	+	.	Parent=Os01t0684800-01
Chr01	irgsp1_rep	five_prime_UTR	28232096	28232126	.	+	.	Parent=Os01t0684800-01
Chr01	irgsp1_rep	CDS	28232127	28232383	.	+	0	Parent=Os01t0684800-01
Chr01	irgsp1_rep	CDS	28232531	28232641	.	+	1	Parent=Os01t0684800-01
Chr01	irgsp1_rep	CDS	28233090	28233180	.	+	1	Parent=Os01t0684800-01
Chr01	irgsp1_rep	CDS	28233352	28233420	.	+	0	Parent=Os01t0684800-01
Chr01	irgsp1_rep	CDS	28233610	28233687	.	+	0	Parent=Os01t0684800-01
Chr01	irgsp1_rep	CDS	28233833	28234114	.	+	0	Parent=Os01t0684800-01
Chr01	irgsp1_rep	three_prime_UTR	28234115	28234495	.	+	.	Parent=Os01t0684800-01
Chr01	irgsp1_rep	three_prime_UTR	28234591	28234854	.	+	.	Parent=Os01t0684800-01
Chr01	irgsp1_rep	mRNA	28235071	28238631	.	-	.	ID=Os01t0684900-01;Name=Os01t0684900-01;Locus_id=Os01g0684900;Note=Multi antimicrobial extrusion protein MatE family protein.;Transcript_evidence=AK102052 (DDBJ%2C Best hit);ORF_evidence=B6U6E4 (UniProt);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);NIAS_FLcDNA=J033082B20;Expression=AK102052;TENOR=Os01t0684900-01;KEGG=Os01t0684900-01
Chr01	irgsp1_rep	five_prime_UTR	28238457	28238631	.	-	.	Parent=Os01t0684900-01
Chr01	irgsp1_rep	CDS	28238187	28238456	.	-	0	Parent=Os01t0684900-01
Chr01	irgsp1_rep	CDS	28236705	28237249	.	-	0	Parent=Os01t0684900-01
Chr01	irgsp1_rep	CDS	28236529	28236615	.	-	1	Parent=Os01t0684900-01
Chr01	irgsp1_rep	CDS	28236391	28236447	.	-	1	Parent=Os01t0684900-01
Chr01	irgsp1_rep	CDS	28236058	28236296	.	-	1	Parent=Os01t0684900-01
Chr01	irgsp1_rep	CDS	28235608	28235813	.	-	2	Parent=Os01t0684900-01
Chr01	irgsp1_rep	CDS	28235415	28235486	.	-	0	Parent=Os01t0684900-01
Chr01	irgsp1_rep	three_prime_UTR	28235071	28235414	.	-	.	Parent=Os01t0684900-01
Chr01	irgsp1_rep	mRNA	28240209	28241548	.	+	.	ID=Os01t0685100-01;Name=Os01t0685100-01;Locus_id=Os01g0685100;Note=Conserved hypothetical protein.;Transcript_evidence=AK109666 (DDBJ%2C Best hit);ORF_evidence=A3BVU6 (UniProt);NIAS_FLcDNA=002-145-A04;TENOR=Os01t0685100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	28240209	28240870	.	+	.	Parent=Os01t0685100-01
Chr01	irgsp1_rep	CDS	28240871	28241011	.	+	0	Parent=Os01t0685100-01
Chr01	irgsp1_rep	three_prime_UTR	28241012	28241548	.	+	.	Parent=Os01t0685100-01
Chr01	irgsp1_rep	mRNA	28240253	28242532	.	+	.	ID=Os01t0685100-02;Name=Os01t0685100-02;Locus_id=Os01g0685100;Note=Conserved hypothetical protein.;Transcript_evidence=AK289190 (DDBJ%2C Best hit);ORF_evidence=Q5N7N0 (UniProt);NIAS_FLcDNA=J100038P15;TENOR=Os01t0685100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	28240253	28241848	.	+	.	Parent=Os01t0685100-02
Chr01	irgsp1_rep	CDS	28241849	28242385	.	+	0	Parent=Os01t0685100-02
Chr01	irgsp1_rep	three_prime_UTR	28242386	28242532	.	+	.	Parent=Os01t0685100-02
Chr01	irgsp1_rep	mRNA	28242906	28246259	.	-	.	ID=Os01t0685200-01;Name=Os01t0685200-01;Locus_id=Os01g0685200;Note=Similar to anti-silencing protein 1.;Transcript_evidence=AK240766 (DDBJ%2C Best hit);ORF_evidence=B6TK42 (UniProt);GO=Biological Process: Chromatin assembly or disassembly (GO:0006333),Cellular Component: nucleus (GO:0005634);InterPro=Histone chaperone%2C ASF1-like (IPR006818);NIAS_FLcDNA=J053058F10;TENOR=Os01t0685200-01;KEGG=Os01t0685200-01
Chr01	irgsp1_rep	five_prime_UTR	28246063	28246259	.	-	.	Parent=Os01t0685200-01
Chr01	irgsp1_rep	CDS	28245907	28246062	.	-	0	Parent=Os01t0685200-01
Chr01	irgsp1_rep	CDS	28245658	28245786	.	-	0	Parent=Os01t0685200-01
Chr01	irgsp1_rep	CDS	28244302	28244473	.	-	0	Parent=Os01t0685200-01
Chr01	irgsp1_rep	CDS	28243527	28243642	.	-	2	Parent=Os01t0685200-01
Chr01	irgsp1_rep	CDS	28242977	28243318	.	-	0	Parent=Os01t0685200-01
Chr01	irgsp1_rep	three_prime_UTR	28242906	28242976	.	-	.	Parent=Os01t0685200-01
Chr01	irgsp1_rep	mRNA	28246607	28248021	.	+	.	ID=Os01t0685300-01;Name=Os01t0685300-01;Locus_id=Os01g0685300;Note=Conserved hypothetical protein.;Transcript_evidence=AK110519 (DDBJ%2C Best hit);ORF_evidence=B8A7M6 (UniProt);NIAS_FLcDNA=002-167-H01;Expression=AK110519;TENOR=Os01t0685300-01;KEGG=Os01t0685300-01
Chr01	irgsp1_rep	five_prime_UTR	28246607	28247165	.	+	.	Parent=Os01t0685300-01
Chr01	irgsp1_rep	CDS	28247166	28247597	.	+	0	Parent=Os01t0685300-01
Chr01	irgsp1_rep	three_prime_UTR	28247598	28248021	.	+	.	Parent=Os01t0685300-01
Chr01	irgsp1_rep	mRNA	28250506	28251508	.	+	.	ID=Os01t0685400-01;Name=Os01t0685400-01;Locus_id=Os01g0685400;Note=Homeodomain-like domain containing protein.;Transcript_evidence=AK243120 (DDBJ%2C Best hit);ORF_evidence=Q8S0Z6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J100028J01;TENOR=Os01t0685400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	28250506	28250587	.	+	.	Parent=Os01t0685400-01
Chr01	irgsp1_rep	CDS	28250588	28251292	.	+	0	Parent=Os01t0685400-01
Chr01	irgsp1_rep	three_prime_UTR	28251293	28251508	.	+	.	Parent=Os01t0685400-01
Chr01	irgsp1_rep	mRNA	28261273	28267707	.	-	.	ID=Os01t0685500-01;Name=Os01t0685500-01;Locus_id=Os01g0685500;Oryzabase Gene Name Synonym(s)=DNA ligase;Note=Similar to DNA ligase.;Transcript_evidence=AK064463 (DDBJ%2C Best hit);ORF_evidence=B9EYN2 (UniProt);GO=Biological Process: DNA repair (GO:0006281),Biological Process: DNA recombination (GO:0006310),Biological Process: DNA ligation involved in DNA repair (GO:0051103),Molecular Function: DNA ligase activity (GO:0003909),Molecular Function: DNA ligase (ATP) activity (GO:0003910),Molecular Function: ATP binding (GO:0005524);InterPro=DNA ligase%2C ATP-dependent%2C central (IPR012310),DNA ligase%2C ATP-dependent%2C conserved site (IPR016059);NIAS_FLcDNA=002-110-G07;Oryzabase=21304;TENOR=Os01t0685500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	28267640	28267707	.	-	0	Parent=Os01t0685500-01
Chr01	irgsp1_rep	CDS	28266915	28267074	.	-	1	Parent=Os01t0685500-01
Chr01	irgsp1_rep	CDS	28266705	28266812	.	-	0	Parent=Os01t0685500-01
Chr01	irgsp1_rep	CDS	28266122	28266175	.	-	0	Parent=Os01t0685500-01
Chr01	irgsp1_rep	three_prime_UTR	28265604	28266121	.	-	.	Parent=Os01t0685500-01
Chr01	irgsp1_rep	three_prime_UTR	28265430	28265488	.	-	.	Parent=Os01t0685500-01
Chr01	irgsp1_rep	three_prime_UTR	28263820	28263981	.	-	.	Parent=Os01t0685500-01
Chr01	irgsp1_rep	three_prime_UTR	28263629	28263714	.	-	.	Parent=Os01t0685500-01
Chr01	irgsp1_rep	three_prime_UTR	28263443	28263542	.	-	.	Parent=Os01t0685500-01
Chr01	irgsp1_rep	three_prime_UTR	28261931	28262048	.	-	.	Parent=Os01t0685500-01
Chr01	irgsp1_rep	three_prime_UTR	28261273	28261620	.	-	.	Parent=Os01t0685500-01
Chr01	irgsp1_rep	mRNA	28262510	28262980	.	+	.	ID=Os01t0685600-01;Name=Os01t0685600-01;Locus_id=Os01g0685600;Note=Hypothetical protein.;Transcript_evidence=AK107703 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-132-D01;TENOR=Os01t0685600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	28262510	28262587	.	+	.	Parent=Os01t0685600-01
Chr01	irgsp1_rep	CDS	28262588	28262854	.	+	0	Parent=Os01t0685600-01
Chr01	irgsp1_rep	three_prime_UTR	28262855	28262980	.	+	.	Parent=Os01t0685600-01
Chr01	irgsp1_rep	mRNA	28267539	28269967	.	+	.	ID=Os01t0685650-01;Name=Os01t0685650-01;Locus_id=Os01g0685650;Note=Hypothetical gene.;Transcript_evidence=AK288984 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090086B09;TENOR=Os01t0685650-01;KEGG=Os01t0685650-01
Chr01	irgsp1_rep	five_prime_UTR	28267539	28269459	.	+	.	Parent=Os01t0685650-01
Chr01	irgsp1_rep	CDS	28269460	28269750	.	+	0	Parent=Os01t0685650-01
Chr01	irgsp1_rep	three_prime_UTR	28269751	28269967	.	+	.	Parent=Os01t0685650-01
Chr01	irgsp1_rep	mRNA	28277699	28281938	.	+	.	ID=Os01t0685800-01;Name=Os01t0685800-01;Locus_id=Os01g0685800;Oryzabase Gene Symbol Synonym(s)=AtpB;Oryzabase Gene Name Synonym(s)=beta subunit of ATP synthase;Note=Similar to ATP synthase beta chain%2C mitochondrial precursor (EC 3.6.3.14).;Transcript_evidence=AK064953 (DDBJ%2C Best hit);ORF_evidence=Q01859 (UniProt);GO=Biological Process: ATP catabolic process (GO:0006200),Biological Process: ATP biosynthetic process (GO:0006754),Biological Process: ATP synthesis coupled proton transport (GO:0015986),Biological Process: ATP hydrolysis coupled proton transport (GO:0015991),Biological Process: proton transport (GO:0015992),Biological Process: ATP metabolic process (GO:0046034),Cellular Component: mitochondrial proton-transporting ATP synthase complex%2C catalytic core F(1) (GO:0000275),Cellular Component: proton-transporting two-sector ATPase complex (GO:0016469),Cellular Component: proton-transporting two-sector ATPase complex%2C catalytic domain (GO:0033178),Cellular Component: proton-transporting ATP synthase complex%2C catalytic core F(1) (GO:0045261),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrogen-exporting ATPase activity%2C phosphorylative mechanism (GO:0008553),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C catalyzing transmembrane movement of substances (GO:0016820),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: hydrogen ion transporting ATP synthase activity%2C rotational mechanism (GO:0046933),Molecular Function: proton-transporting ATPase activity%2C rotational mechanism (GO:0046961);InterPro=ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C nucleotide-binding domain (IPR000194),ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C C-terminal (IPR000793),ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C N-terminal (IPR004100),ATPase%2C F1 complex%2C beta subunit (IPR005722),ATPase%2C F1/A1 complex%2C alpha/beta subunit%2C N-terminal (IPR018118),ATPase%2C alpha/beta subunit%2C nucleotide-binding domain%2C active site (IPR020003),ATP synthase%2C F1 beta subunit (IPR020971),ATPase%2C F1 complex beta subunit/V1 complex%2C C-terminal (IPR024034);NIAS_FLcDNA=J013001A02;Oryzabase=21629;Expression=AK064953;TENOR=Os01t0685800-01;KEGG=Os01t0685800-01 (EC:3.6.3.14)
Chr01	irgsp1_rep	five_prime_UTR	28277699	28277808	.	+	.	Parent=Os01t0685800-01
Chr01	irgsp1_rep	CDS	28277809	28278285	.	+	0	Parent=Os01t0685800-01
Chr01	irgsp1_rep	CDS	28279164	28279239	.	+	0	Parent=Os01t0685800-01
Chr01	irgsp1_rep	CDS	28279342	28279430	.	+	2	Parent=Os01t0685800-01
Chr01	irgsp1_rep	CDS	28279574	28279691	.	+	0	Parent=Os01t0685800-01
Chr01	irgsp1_rep	CDS	28279774	28279877	.	+	2	Parent=Os01t0685800-01
Chr01	irgsp1_rep	CDS	28279967	28280125	.	+	0	Parent=Os01t0685800-01
Chr01	irgsp1_rep	CDS	28280268	28280492	.	+	0	Parent=Os01t0685800-01
Chr01	irgsp1_rep	CDS	28280575	28280886	.	+	0	Parent=Os01t0685800-01
Chr01	irgsp1_rep	CDS	28281560	28281673	.	+	0	Parent=Os01t0685800-01
Chr01	irgsp1_rep	three_prime_UTR	28281674	28281938	.	+	.	Parent=Os01t0685800-01
Chr01	irgsp1_rep	mRNA	28277994	28281871	.	+	.	ID=Os01t0685800-02;Name=Os01t0685800-02;Locus_id=Os01g0685800;Oryzabase Gene Symbol Synonym(s)=AtpB;Oryzabase Gene Name Synonym(s)=beta subunit of ATP synthase;Note=Similar to ATP synthase subunit beta%2C mitochondrial.;Transcript_evidence=AK071414 (DDBJ%2C Best hit);ORF_evidence=Q01859 (UniProt);GO=Biological Process: ATP synthesis coupled proton transport (GO:0015986),Biological Process: ATP hydrolysis coupled proton transport (GO:0015991),Biological Process: proton transport (GO:0015992),Biological Process: ATP metabolic process (GO:0046034),Cellular Component: proton-transporting two-sector ATPase complex (GO:0016469),Cellular Component: proton-transporting two-sector ATPase complex%2C catalytic domain (GO:0033178),Cellular Component: proton-transporting ATP synthase complex%2C catalytic core F(1) (GO:0045261),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrogen-exporting ATPase activity%2C phosphorylative mechanism (GO:0008553),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C catalyzing transmembrane movement of substances (GO:0016820),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: hydrogen ion transporting ATP synthase activity%2C rotational mechanism (GO:0046933),Molecular Function: proton-transporting ATPase activity%2C rotational mechanism (GO:0046961);InterPro=ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C nucleotide-binding domain (IPR000194),ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C C-terminal (IPR000793),ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C N-terminal (IPR004100),ATPase%2C F1 complex%2C beta subunit (IPR005722),ATPase%2C F1/A1 complex%2C alpha/beta subunit%2C N-terminal (IPR018118),ATPase%2C alpha/beta subunit%2C nucleotide-binding domain%2C active site (IPR020003),ATPase%2C F1 complex beta subunit/V1 complex%2C C-terminal (IPR024034);NIAS_FLcDNA=J023093I16;Oryzabase=21629;Expression=AK071414;TENOR=Os01t0685800-02;KEGG=Os01t0685800-02 (EC:3.6.3.14)
Chr01	irgsp1_rep	five_prime_UTR	28277994	28277994	.	+	.	Parent=Os01t0685800-02
Chr01	irgsp1_rep	CDS	28277995	28278285	.	+	0	Parent=Os01t0685800-02
Chr01	irgsp1_rep	CDS	28279164	28279239	.	+	0	Parent=Os01t0685800-02
Chr01	irgsp1_rep	CDS	28279342	28279430	.	+	2	Parent=Os01t0685800-02
Chr01	irgsp1_rep	CDS	28279574	28279691	.	+	0	Parent=Os01t0685800-02
Chr01	irgsp1_rep	CDS	28279774	28279877	.	+	2	Parent=Os01t0685800-02
Chr01	irgsp1_rep	CDS	28279967	28280125	.	+	0	Parent=Os01t0685800-02
Chr01	irgsp1_rep	CDS	28280268	28280492	.	+	0	Parent=Os01t0685800-02
Chr01	irgsp1_rep	CDS	28280575	28280886	.	+	0	Parent=Os01t0685800-02
Chr01	irgsp1_rep	CDS	28281560	28281673	.	+	0	Parent=Os01t0685800-02
Chr01	irgsp1_rep	three_prime_UTR	28281674	28281871	.	+	.	Parent=Os01t0685800-02
Chr01	irgsp1_rep	mRNA	28277798	28281870	.	-	.	ID=Os01t0685850-00;Name=Os01t0685850-00;Locus_id=Os01g0685850;Note=Hypothetical protein.;Transcript_evidence=tplb0039e03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0685850-00
Chr01	irgsp1_rep	five_prime_UTR	28281572	28281870	.	-	.	Parent=Os01t0685850-00
Chr01	irgsp1_rep	five_prime_UTR	28280564	28280899	.	-	.	Parent=Os01t0685850-00
Chr01	irgsp1_rep	five_prime_UTR	28280266	28280475	.	-	.	Parent=Os01t0685850-00
Chr01	irgsp1_rep	five_prime_UTR	28279963	28280123	.	-	.	Parent=Os01t0685850-00
Chr01	irgsp1_rep	five_prime_UTR	28279761	28279873	.	-	.	Parent=Os01t0685850-00
Chr01	irgsp1_rep	five_prime_UTR	28279565	28279685	.	-	.	Parent=Os01t0685850-00
Chr01	irgsp1_rep	five_prime_UTR	28279368	28279419	.	-	.	Parent=Os01t0685850-00
Chr01	irgsp1_rep	CDS	28279340	28279367	.	-	0	Parent=Os01t0685850-00
Chr01	irgsp1_rep	CDS	28279164	28279237	.	-	2	Parent=Os01t0685850-00
Chr01	irgsp1_rep	CDS	28277798	28278285	.	-	0	Parent=Os01t0685850-00
Chr01	irgsp1_rep	mRNA	28282813	28287061	.	+	.	ID=Os01t0685900-01;Name=Os01t0685900-01;Locus_id=Os01g0685900;Note=Similar to 65kD microtubule associated protein.;Transcript_evidence=AK102005 (DDBJ%2C Best hit);ORF_evidence=NP_199973.1 (RefSeq);InterPro=Microtubule-associated protein%2C MAP65/ASE1-type (IPR007145);NIAS_FLcDNA=J033079N16;Expression=AK102005;TENOR=Os01t0685900-01;KEGG=Os01t0685900-01
Chr01	irgsp1_rep	five_prime_UTR	28282813	28283065	.	+	.	Parent=Os01t0685900-01
Chr01	irgsp1_rep	five_prime_UTR	28283223	28283246	.	+	.	Parent=Os01t0685900-01
Chr01	irgsp1_rep	CDS	28283247	28283318	.	+	0	Parent=Os01t0685900-01
Chr01	irgsp1_rep	CDS	28283424	28283630	.	+	0	Parent=Os01t0685900-01
Chr01	irgsp1_rep	CDS	28284234	28284482	.	+	0	Parent=Os01t0685900-01
Chr01	irgsp1_rep	CDS	28284613	28284822	.	+	0	Parent=Os01t0685900-01
Chr01	irgsp1_rep	CDS	28284900	28285055	.	+	0	Parent=Os01t0685900-01
Chr01	irgsp1_rep	CDS	28285153	28285312	.	+	0	Parent=Os01t0685900-01
Chr01	irgsp1_rep	CDS	28285406	28285557	.	+	2	Parent=Os01t0685900-01
Chr01	irgsp1_rep	CDS	28285648	28285735	.	+	0	Parent=Os01t0685900-01
Chr01	irgsp1_rep	CDS	28285853	28285929	.	+	2	Parent=Os01t0685900-01
Chr01	irgsp1_rep	CDS	28286013	28286087	.	+	0	Parent=Os01t0685900-01
Chr01	irgsp1_rep	CDS	28286177	28286411	.	+	0	Parent=Os01t0685900-01
Chr01	irgsp1_rep	CDS	28286502	28286890	.	+	2	Parent=Os01t0685900-01
Chr01	irgsp1_rep	three_prime_UTR	28286891	28287061	.	+	.	Parent=Os01t0685900-01
Chr01	irgsp1_rep	mRNA	28282925	28287091	.	+	.	ID=Os01t0685900-02;Name=Os01t0685900-02;Locus_id=Os01g0685900;Note=Similar to 65kD microtubule associated protein.;Transcript_evidence=AK064024 (DDBJ%2C Best hit);ORF_evidence=NP_199973.1 (RefSeq);InterPro=Microtubule-associated protein%2C MAP65/ASE1-type (IPR007145);NIAS_FLcDNA=001-125-A09;Expression=AK064024;TENOR=Os01t0685900-02;KEGG=Os01t0685900-02
Chr01	irgsp1_rep	five_prime_UTR	28282925	28283065	.	+	.	Parent=Os01t0685900-02
Chr01	irgsp1_rep	five_prime_UTR	28283223	28283246	.	+	.	Parent=Os01t0685900-02
Chr01	irgsp1_rep	CDS	28283247	28283318	.	+	0	Parent=Os01t0685900-02
Chr01	irgsp1_rep	CDS	28283424	28283630	.	+	0	Parent=Os01t0685900-02
Chr01	irgsp1_rep	CDS	28284234	28284482	.	+	0	Parent=Os01t0685900-02
Chr01	irgsp1_rep	CDS	28284613	28284822	.	+	0	Parent=Os01t0685900-02
Chr01	irgsp1_rep	CDS	28284900	28285055	.	+	0	Parent=Os01t0685900-02
Chr01	irgsp1_rep	CDS	28285153	28285312	.	+	0	Parent=Os01t0685900-02
Chr01	irgsp1_rep	CDS	28285406	28285557	.	+	2	Parent=Os01t0685900-02
Chr01	irgsp1_rep	CDS	28285648	28285735	.	+	0	Parent=Os01t0685900-02
Chr01	irgsp1_rep	CDS	28285853	28285929	.	+	2	Parent=Os01t0685900-02
Chr01	irgsp1_rep	CDS	28286013	28286087	.	+	0	Parent=Os01t0685900-02
Chr01	irgsp1_rep	CDS	28286177	28286411	.	+	0	Parent=Os01t0685900-02
Chr01	irgsp1_rep	CDS	28286502	28286890	.	+	2	Parent=Os01t0685900-02
Chr01	irgsp1_rep	three_prime_UTR	28286891	28287091	.	+	.	Parent=Os01t0685900-02
Chr01	irgsp1_rep	mRNA	28289381	28290175	.	+	.	ID=Os01t0686000-01;Name=Os01t0686000-01;Locus_id=Os01g0686000;Note=Similar to cDNA%2C clone: J100026I16%2C full insert sequence.;Transcript_evidence=AK110784 (DDBJ%2C Best hit);ORF_evidence=B7FA06 (UniProt);NIAS_FLcDNA=002-171-C05;TENOR=Os01t0686000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	28289381	28289493	.	+	.	Parent=Os01t0686000-01
Chr01	irgsp1_rep	CDS	28289494	28290060	.	+	0	Parent=Os01t0686000-01
Chr01	irgsp1_rep	three_prime_UTR	28290061	28290175	.	+	.	Parent=Os01t0686000-01
Chr01	irgsp1_rep	mRNA	28295136	28299994	.	+	.	ID=Os01t0686100-01;Name=Os01t0686100-01;Locus_id=Os01g0686100;Note=Hypothetical conserved gene.;Transcript_evidence=AK064922 (DDBJ%2C Best hit);ORF_evidence=B9EYN6 (UniProt);NIAS_FLcDNA=J013000N12;TENOR=Os01t0686100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	28295136	28295656	.	+	.	Parent=Os01t0686100-01
Chr01	irgsp1_rep	five_prime_UTR	28295751	28295828	.	+	.	Parent=Os01t0686100-01
Chr01	irgsp1_rep	five_prime_UTR	28296789	28296892	.	+	.	Parent=Os01t0686100-01
Chr01	irgsp1_rep	five_prime_UTR	28297372	28297465	.	+	.	Parent=Os01t0686100-01
Chr01	irgsp1_rep	five_prime_UTR	28297564	28299601	.	+	.	Parent=Os01t0686100-01
Chr01	irgsp1_rep	CDS	28299602	28299802	.	+	0	Parent=Os01t0686100-01
Chr01	irgsp1_rep	three_prime_UTR	28299803	28299994	.	+	.	Parent=Os01t0686100-01
Chr01	irgsp1_rep	mRNA	28295763	28299924	.	+	.	ID=Os01t0686100-02;Name=Os01t0686100-02;Locus_id=Os01g0686100;Note=Hypothetical conserved gene.;Transcript_evidence=AK099913 (DDBJ%2C Best hit);ORF_evidence=B9EYN6 (UniProt);NIAS_FLcDNA=J013116E13;Expression=AK099913;TENOR=Os01t0686100-02;KEGG=Os01t0686100-02
Chr01	irgsp1_rep	five_prime_UTR	28295763	28295828	.	+	.	Parent=Os01t0686100-02
Chr01	irgsp1_rep	five_prime_UTR	28296789	28296892	.	+	.	Parent=Os01t0686100-02
Chr01	irgsp1_rep	five_prime_UTR	28297372	28297465	.	+	.	Parent=Os01t0686100-02
Chr01	irgsp1_rep	five_prime_UTR	28297564	28297633	.	+	.	Parent=Os01t0686100-02
Chr01	irgsp1_rep	five_prime_UTR	28298340	28299601	.	+	.	Parent=Os01t0686100-02
Chr01	irgsp1_rep	CDS	28299602	28299802	.	+	0	Parent=Os01t0686100-02
Chr01	irgsp1_rep	three_prime_UTR	28299803	28299924	.	+	.	Parent=Os01t0686100-02
Chr01	irgsp1_rep	mRNA	28303270	28304839	.	+	.	ID=Os01t0686200-01;Name=Os01t0686200-01;Locus_id=Os01g0686200;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK062283 (DDBJ%2C Best hit);ORF_evidence=NP_001152529.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=001-100-C08;Expression=AK062283;TENOR=Os01t0686200-01;KEGG=Os01t0686200-01
Chr01	irgsp1_rep	five_prime_UTR	28303270	28303291	.	+	.	Parent=Os01t0686200-01
Chr01	irgsp1_rep	CDS	28303292	28304572	.	+	0	Parent=Os01t0686200-01
Chr01	irgsp1_rep	three_prime_UTR	28304573	28304839	.	+	.	Parent=Os01t0686200-01
Chr01	irgsp1_rep	mRNA	28307652	28309500	.	+	.	ID=Os01t0686300-01;Name=Os01t0686300-01;Locus_id=Os01g0686300;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK109457 (DDBJ%2C Best hit);ORF_evidence=NP_001152529.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=001-120-C10;Expression=AK109457;TENOR=Os01t0686300-01;KEGG=Os01t0686300-01
Chr01	irgsp1_rep	five_prime_UTR	28307652	28307713	.	+	.	Parent=Os01t0686300-01
Chr01	irgsp1_rep	CDS	28307714	28309150	.	+	0	Parent=Os01t0686300-01
Chr01	irgsp1_rep	three_prime_UTR	28309151	28309500	.	+	.	Parent=Os01t0686300-01
Chr01	irgsp1_rep	mRNA	28316497	28317263	.	+	.	ID=Os01t0686400-01;Name=Os01t0686400-01;Locus_id=Os01g0686400;Note=Similar to AR401.;Transcript_evidence=AK058740 (DDBJ%2C Best hit);ORF_evidence=A6N0J1 (UniProt);NIAS_FLcDNA=001-019-G07;Expression=AK058740;TENOR=Os01t0686400-01;KEGG=Os01t0686400-01
Chr01	irgsp1_rep	five_prime_UTR	28316497	28316497	.	+	.	Parent=Os01t0686400-01
Chr01	irgsp1_rep	CDS	28316498	28316527	.	+	0	Parent=Os01t0686400-01
Chr01	irgsp1_rep	CDS	28316782	28316994	.	+	0	Parent=Os01t0686400-01
Chr01	irgsp1_rep	three_prime_UTR	28316995	28317263	.	+	.	Parent=Os01t0686400-01
Chr01	irgsp1_rep	mRNA	28319268	28321083	.	+	.	ID=Os01t0686500-01;Name=Os01t0686500-01;Locus_id=Os01g0686500;Note=Protein of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK107195 (DDBJ%2C Best hit);ORF_evidence=A2ZWN2 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=002-125-A08;Expression=AK107195;TENOR=Os01t0686500-01;KEGG=Os01t0686500-01
Chr01	irgsp1_rep	five_prime_UTR	28319268	28319268	.	+	.	Parent=Os01t0686500-01
Chr01	irgsp1_rep	CDS	28319269	28319300	.	+	0	Parent=Os01t0686500-01
Chr01	irgsp1_rep	CDS	28319376	28320161	.	+	1	Parent=Os01t0686500-01
Chr01	irgsp1_rep	CDS	28320303	28320681	.	+	1	Parent=Os01t0686500-01
Chr01	irgsp1_rep	three_prime_UTR	28320682	28320688	.	+	.	Parent=Os01t0686500-01
Chr01	irgsp1_rep	three_prime_UTR	28320835	28321083	.	+	.	Parent=Os01t0686500-01
Chr01	irgsp1_rep	mRNA	28322583	28325080	.	+	.	ID=Os01t0686600-01;Name=Os01t0686600-01;Locus_id=Os01g0686600;Note=RNA-processing protein%2C HAT helix domain containing protein.;Transcript_evidence=AK119910 (DDBJ%2C Best hit);ORF_evidence=Q5N7M2 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Cellular Component: intracellular (GO:0005622);InterPro=RNA-processing protein%2C HAT helix (IPR003107);NIAS_FLcDNA=002-183-B09;Expression=AK119910;TENOR=Os01t0686600-01;KEGG=Os01t0686600-01
Chr01	irgsp1_rep	five_prime_UTR	28322583	28322660	.	+	.	Parent=Os01t0686600-01
Chr01	irgsp1_rep	CDS	28322661	28322937	.	+	0	Parent=Os01t0686600-01
Chr01	irgsp1_rep	CDS	28324014	28324927	.	+	2	Parent=Os01t0686600-01
Chr01	irgsp1_rep	three_prime_UTR	28324928	28325080	.	+	.	Parent=Os01t0686600-01
Chr01	irgsp1_rep	mRNA	28322626	28324873	.	-	.	ID=Os01t0686650-00;Name=Os01t0686650-00;Locus_id=Os01g0686650;Note=Hypothetical protein.;Transcript_evidence=tplb0045j05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0686650-00
Chr01	irgsp1_rep	five_prime_UTR	28324520	28324873	.	-	.	Parent=Os01t0686650-00
Chr01	irgsp1_rep	CDS	28323809	28324519	.	-	0	Parent=Os01t0686650-00
Chr01	irgsp1_rep	three_prime_UTR	28322626	28323808	.	-	.	Parent=Os01t0686650-00
Chr01	irgsp1_rep	mRNA	28325379	28327645	.	-	.	ID=Os01t0686700-00;Name=Os01t0686700-00;Locus_id=Os01g0686700;Note=Similar to protein binding protein.;Transcript_evidence=AK371370 (DDBJ);ORF_evidence=NP_001148808.1 (RefSeq);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083);TENOR=Os01t0686700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	28327642	28327645	.	-	.	Parent=Os01t0686700-00
Chr01	irgsp1_rep	CDS	28327391	28327641	.	-	0	Parent=Os01t0686700-00
Chr01	irgsp1_rep	CDS	28326731	28326802	.	-	1	Parent=Os01t0686700-00
Chr01	irgsp1_rep	CDS	28326495	28326525	.	-	1	Parent=Os01t0686700-00
Chr01	irgsp1_rep	three_prime_UTR	28326458	28326494	.	-	.	Parent=Os01t0686700-00
Chr01	irgsp1_rep	three_prime_UTR	28326225	28326375	.	-	.	Parent=Os01t0686700-00
Chr01	irgsp1_rep	three_prime_UTR	28326045	28326125	.	-	.	Parent=Os01t0686700-00
Chr01	irgsp1_rep	three_prime_UTR	28325856	28325952	.	-	.	Parent=Os01t0686700-00
Chr01	irgsp1_rep	three_prime_UTR	28325379	28325741	.	-	.	Parent=Os01t0686700-00
Chr01	irgsp1_rep	mRNA	28330871	28333317	.	+	.	ID=Os01t0686800-01;Name=Os01t0686800-01;Locus_id=Os01g0686800;RAP-DB Gene Symbol Synonym(s)=RACK1%2C RACK1A%2C RWD%2C OsWD40-21%2C OsRACK1%2C OsRACK1A;RAP-DB Gene Name Synonym(s)=RECEPTOR FOR ACTIVATED C-KINASE 1%2C q group of receptor for activated C-kinase%2C GTP-binding regulatory protein beta chain;CGSNL Gene Symbol=RACK1;CGSNL Gene Name=RECEPTOR FOR ACTIVATED C-KINASE 1;Oryzabase Gene Symbol Synonym(s)=RACK1A%2C RWD%2C OsWD40-21%2C OsRACK1%2C OsRACK1A;Oryzabase Gene Name Synonym(s)=q group of receptor for activated C-kinase%2C GTP-binding regulatory protein beta chain%2C receptor for activated C kinase 1%2C Receptor for Activated C-kinase 1;Note=Protein containing the WD-40 repeat%2C Innate immunuty;Transcript_evidence=D38231 (DDBJ);ORF_evidence=P49027 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),G-protein beta WD-40 repeat (IPR020472);Manual Curation=November 16%2C 2009;Literature_PMID=7757340,18723578;Oryzabase=10422;TENOR=Os01t0686800-01
Chr01	irgsp1_rep	five_prime_UTR	28330871	28330896	.	+	.	Parent=Os01t0686800-01
Chr01	irgsp1_rep	CDS	28330897	28331787	.	+	0	Parent=Os01t0686800-01
Chr01	irgsp1_rep	CDS	28332950	28333063	.	+	0	Parent=Os01t0686800-01
Chr01	irgsp1_rep	three_prime_UTR	28333064	28333317	.	+	.	Parent=Os01t0686800-01
Chr01	irgsp1_rep	mRNA	28330800	28333317	.	+	.	ID=Os01t0686800-02;Name=Os01t0686800-02;Locus_id=Os01g0686800;CGSNL Gene Symbol=RACK1;CGSNL Gene Name=RECEPTOR FOR ACTIVATED C-KINASE 1;Oryzabase Gene Symbol Synonym(s)=RACK1A%2C RWD%2C OsWD40-21%2C OsRACK1%2C OsRACK1A;Oryzabase Gene Name Synonym(s)=q group of receptor for activated C-kinase%2C GTP-binding regulatory protein beta chain%2C receptor for activated C kinase 1%2C Receptor for Activated C-kinase 1;Note=Similar to Guanine nucleotide-binding protein subunit beta-like protein A.;Transcript_evidence=AK121587 (DDBJ%2C Best hit),AK060428 (DDBJ%2C Best hit),AK098877 (DDBJ%2C Best hit),AK098893 (DDBJ%2C Best hit);ORF_evidence=P49027 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J033037K24,001-011-A02,J013001E12,J013001N15;Oryzabase=10422;TENOR=Os01t0686800-02
Chr01	irgsp1_rep	five_prime_UTR	28330800	28330896	.	+	.	Parent=Os01t0686800-02
Chr01	irgsp1_rep	CDS	28330897	28331787	.	+	0	Parent=Os01t0686800-02
Chr01	irgsp1_rep	CDS	28332950	28333063	.	+	0	Parent=Os01t0686800-02
Chr01	irgsp1_rep	three_prime_UTR	28333064	28333317	.	+	.	Parent=Os01t0686800-02
Chr01	irgsp1_rep	mRNA	28342915	28343649	.	-	.	ID=Os01t0687150-00;Name=Os01t0687150-00;Locus_id=Os01g0687150;Note=Similar to ATPUP3.;Transcript_evidence=AK357629 (DDBJ);ORF_evidence=B4FET6 (UniProt);TENOR=Os01t0687150-00
Chr01	irgsp1_rep	CDS	28343026	28343649	.	-	0	Parent=Os01t0687150-00
Chr01	irgsp1_rep	three_prime_UTR	28342915	28343025	.	-	.	Parent=Os01t0687150-00
Chr01	irgsp1_rep	mRNA	28345842	28350882	.	+	.	ID=Os01t0687300-01;Name=Os01t0687300-01;Locus_id=Os01g0687300;Note=Conserved hypothetical protein.;Transcript_evidence=AK122113 (DDBJ%2C Best hit);ORF_evidence=A2WTW7 (UniProt);NIAS_FLcDNA=J033127O15;Expression=AK122113;TENOR=Os01t0687300-01;KEGG=Os01t0687300-01
Chr01	irgsp1_rep	five_prime_UTR	28345842	28346412	.	+	.	Parent=Os01t0687300-01
Chr01	irgsp1_rep	five_prime_UTR	28346887	28347003	.	+	.	Parent=Os01t0687300-01
Chr01	irgsp1_rep	five_prime_UTR	28347687	28347717	.	+	.	Parent=Os01t0687300-01
Chr01	irgsp1_rep	CDS	28347718	28349254	.	+	0	Parent=Os01t0687300-01
Chr01	irgsp1_rep	CDS	28349516	28349541	.	+	2	Parent=Os01t0687300-01
Chr01	irgsp1_rep	CDS	28350010	28350741	.	+	0	Parent=Os01t0687300-01
Chr01	irgsp1_rep	three_prime_UTR	28350742	28350882	.	+	.	Parent=Os01t0687300-01
Chr01	irgsp1_rep	mRNA	28346074	28350848	.	+	.	ID=Os01t0687300-02;Name=Os01t0687300-02;Locus_id=Os01g0687300;Note=Conserved hypothetical protein.;Transcript_evidence=AK064954 (DDBJ%2C Best hit);ORF_evidence=A2WTW7 (UniProt);NIAS_FLcDNA=J013001A04;Expression=AK064954;TENOR=Os01t0687300-02;KEGG=Os01t0687300-02
Chr01	irgsp1_rep	five_prime_UTR	28346074	28346412	.	+	.	Parent=Os01t0687300-02
Chr01	irgsp1_rep	five_prime_UTR	28346887	28347003	.	+	.	Parent=Os01t0687300-02
Chr01	irgsp1_rep	five_prime_UTR	28347687	28347717	.	+	.	Parent=Os01t0687300-02
Chr01	irgsp1_rep	CDS	28347718	28349254	.	+	0	Parent=Os01t0687300-02
Chr01	irgsp1_rep	CDS	28349516	28349541	.	+	2	Parent=Os01t0687300-02
Chr01	irgsp1_rep	CDS	28350010	28350741	.	+	0	Parent=Os01t0687300-02
Chr01	irgsp1_rep	three_prime_UTR	28350742	28350848	.	+	.	Parent=Os01t0687300-02
Chr01	irgsp1_rep	mRNA	28354882	28356067	.	-	.	ID=Os01t0687400-01;Name=Os01t0687400-01;Locus_id=Os01g0687400;Note=Similar to Chitinase (EC 3.2.1.14).;Transcript_evidence=AK106178 (DDBJ%2C Best hit);ORF_evidence=Q7XXQ0 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 18%2C catalytic domain (IPR001223),Glycoside hydrolase%2C chitinase active site (IPR001579),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-208-C10;Oryzabase=16053;Expression=AK106178;TENOR=Os01t0687400-01;KEGG=Os01t0687400-01 (EC:3.2.1.14)
Chr01	irgsp1_rep	five_prime_UTR	28356049	28356067	.	-	.	Parent=Os01t0687400-01
Chr01	irgsp1_rep	CDS	28355140	28356048	.	-	0	Parent=Os01t0687400-01
Chr01	irgsp1_rep	three_prime_UTR	28354882	28355139	.	-	.	Parent=Os01t0687400-01
Chr01	irgsp1_rep	mRNA	28363993	28364628	.	-	.	ID=Os01t0687450-00;Name=Os01t0687450-00;Locus_id=Os01g0687450;Note=Hypothetical gene.;Transcript_evidence=EU942512 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0687450-00
Chr01	irgsp1_rep	five_prime_UTR	28364351	28364628	.	-	.	Parent=Os01t0687450-00
Chr01	irgsp1_rep	CDS	28363993	28364350	.	-	0	Parent=Os01t0687450-00
Chr01	irgsp1_rep	mRNA	28364038	28368033	.	+	.	ID=Os01t0687500-01;Name=Os01t0687500-01;Locus_id=Os01g0687500;Note=Methionine tRNA Formyltransferase-like domain containing protein.;Transcript_evidence=AK069185 (DDBJ%2C Best hit);ORF_evidence=B4FRN6 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Biological Process: conversion of methionyl-tRNA to N-formyl-methionyl-tRNA (GO:0071951),Molecular Function: catalytic activity (GO:0003824),Molecular Function: methionyl-tRNA formyltransferase activity (GO:0004479),Molecular Function: hydroxymethyl-%2C formyl- and related transferase activity (GO:0016742);InterPro=Formyl transferase%2C N-terminal (IPR002376),Formyl transferase%2C C-terminal (IPR005793),Methionyl-tRNA formyltransferase (IPR005794),Formyl transferase%2C C-terminal-like (IPR011034),Methionine tRNA Formyltransferase-like (IPR015518);NIAS_FLcDNA=J023008N17;Expression=AK069185;TENOR=Os01t0687500-01;KEGG=Os01t0687500-01 (EC:2.1.2.9)
Chr01	irgsp1_rep	five_prime_UTR	28364038	28364062	.	+	.	Parent=Os01t0687500-01
Chr01	irgsp1_rep	CDS	28364063	28364188	.	+	0	Parent=Os01t0687500-01
Chr01	irgsp1_rep	CDS	28364293	28364490	.	+	0	Parent=Os01t0687500-01
Chr01	irgsp1_rep	CDS	28364570	28364672	.	+	0	Parent=Os01t0687500-01
Chr01	irgsp1_rep	CDS	28365407	28365477	.	+	2	Parent=Os01t0687500-01
Chr01	irgsp1_rep	CDS	28365562	28365666	.	+	0	Parent=Os01t0687500-01
Chr01	irgsp1_rep	CDS	28366114	28366147	.	+	0	Parent=Os01t0687500-01
Chr01	irgsp1_rep	CDS	28366358	28366458	.	+	2	Parent=Os01t0687500-01
Chr01	irgsp1_rep	CDS	28367115	28367174	.	+	0	Parent=Os01t0687500-01
Chr01	irgsp1_rep	CDS	28367231	28367428	.	+	0	Parent=Os01t0687500-01
Chr01	irgsp1_rep	CDS	28367511	28367603	.	+	0	Parent=Os01t0687500-01
Chr01	irgsp1_rep	three_prime_UTR	28367604	28368033	.	+	.	Parent=Os01t0687500-01
Chr01	irgsp1_rep	mRNA	28367976	28370530	.	-	.	ID=Os01t0687600-01;Name=Os01t0687600-01;Locus_id=Os01g0687600;Note=Similar to Arginine/serine-rich coiled coil protein 1.;Transcript_evidence=AK106335 (DDBJ%2C Best hit);ORF_evidence=B6TT29 (UniProt);InterPro=Domain of unknown function DUF1777 (IPR013957);NIAS_FLcDNA=002-101-F12;Expression=AK106335;TENOR=Os01t0687600-01;KEGG=Os01t0687600-01
Chr01	irgsp1_rep	five_prime_UTR	28370491	28370530	.	-	.	Parent=Os01t0687600-01
Chr01	irgsp1_rep	CDS	28369897	28370490	.	-	0	Parent=Os01t0687600-01
Chr01	irgsp1_rep	CDS	28369747	28369798	.	-	0	Parent=Os01t0687600-01
Chr01	irgsp1_rep	CDS	28369209	28369307	.	-	2	Parent=Os01t0687600-01
Chr01	irgsp1_rep	CDS	28368705	28368769	.	-	2	Parent=Os01t0687600-01
Chr01	irgsp1_rep	CDS	28368426	28368596	.	-	0	Parent=Os01t0687600-01
Chr01	irgsp1_rep	CDS	28368280	28368348	.	-	0	Parent=Os01t0687600-01
Chr01	irgsp1_rep	three_prime_UTR	28367976	28368279	.	-	.	Parent=Os01t0687600-01
Chr01	irgsp1_rep	mRNA	28370919	28374507	.	-	.	ID=Os01t0687700-01;Name=Os01t0687700-01;Locus_id=Os01g0687700;Note=Protein of unknown function DUF292%2C eukaryotic domain containing protein.;Transcript_evidence=AK073996 (DDBJ%2C Best hit),AK061158 (DDBJ%2C Best hit);ORF_evidence=B8A7P0 (UniProt);InterPro=Domain of unknown function DUF292%2C eukaryotic (IPR005061);NIAS_FLcDNA=J033071E20,006-208-H01;Expression=AK073996;TENOR=Os01t0687700-01;KEGG=Os01t0687700-01
Chr01	irgsp1_rep	five_prime_UTR	28374434	28374507	.	-	.	Parent=Os01t0687700-01
Chr01	irgsp1_rep	CDS	28374384	28374433	.	-	0	Parent=Os01t0687700-01
Chr01	irgsp1_rep	CDS	28373541	28373673	.	-	1	Parent=Os01t0687700-01
Chr01	irgsp1_rep	CDS	28372815	28372918	.	-	0	Parent=Os01t0687700-01
Chr01	irgsp1_rep	CDS	28372516	28372687	.	-	1	Parent=Os01t0687700-01
Chr01	irgsp1_rep	CDS	28372247	28372387	.	-	0	Parent=Os01t0687700-01
Chr01	irgsp1_rep	CDS	28371118	28371477	.	-	0	Parent=Os01t0687700-01
Chr01	irgsp1_rep	three_prime_UTR	28370919	28371117	.	-	.	Parent=Os01t0687700-01
Chr01	irgsp1_rep	mRNA	28376585	28379713	.	-	.	ID=Os01t0687800-00;Name=Os01t0687800-00;Locus_id=Os01g0687800;Note=FAD linked oxidase%2C N-terminal domain containing protein.;Transcript_evidence=AK363488 (DDBJ);ORF_evidence=NP_196715.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: D-arabinono-1%2C4-lactone oxidase activity (GO:0003885),Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=FAD linked oxidase%2C N-terminal (IPR006094),D-arabinono-1%2C4-lactone oxidase (IPR007173),Plant-specific FAD-dependent oxidoreductase (IPR010030),FAD-binding%2C type 2 (IPR016166),FAD-linked oxidase%2C FAD-binding%2C subdomain 2 (IPR016168);TENOR=Os01t0687800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	28379687	28379713	.	-	.	Parent=Os01t0687800-00
Chr01	irgsp1_rep	CDS	28378991	28379686	.	-	0	Parent=Os01t0687800-00
Chr01	irgsp1_rep	CDS	28376585	28377667	.	-	0	Parent=Os01t0687800-00
Chr01	irgsp1_rep	mRNA	28378929	28379546	.	+	.	ID=Os01t0687850-00;Name=Os01t0687850-00;Locus_id=Os01g0687850;Note=Conserved hypothetical protein.;Transcript_evidence=BT086973 (DDBJ);ORF_evidence=C4J826 (UniProt);TENOR=Os01t0687850-00
Chr01	irgsp1_rep	CDS	28378929	28379546	.	+	0	Parent=Os01t0687850-00
Chr01	irgsp1_rep	mRNA	28379739	28380296	.	-	.	ID=Os01t0687900-01;Name=Os01t0687900-01;Locus_id=Os01g0687900;Note=Non-protein coding transcript.;Transcript_evidence=AK062609 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-105-A06;TENOR=Os01t0687900-01
Chr01	irgsp1_rep	exon	28379739	28380296	.	-	.	Parent=Os01t0687900-01
Chr01	irgsp1_rep	mRNA	28380902	28381855	.	-	.	ID=Os01t0688000-01;Name=Os01t0688000-01;Locus_id=Os01g0688000;Note=Conserved hypothetical protein.;Transcript_evidence=AK062967 (DDBJ%2C Best hit);ORF_evidence=A2WTX3 (UniProt);NIAS_FLcDNA=001-109-D12;Expression=AK062967;TENOR=Os01t0688000-01;KEGG=Os01t0688000-01
Chr01	irgsp1_rep	five_prime_UTR	28381482	28381855	.	-	.	Parent=Os01t0688000-01
Chr01	irgsp1_rep	CDS	28381089	28381481	.	-	0	Parent=Os01t0688000-01
Chr01	irgsp1_rep	three_prime_UTR	28380902	28381088	.	-	.	Parent=Os01t0688000-01
Chr01	irgsp1_rep	mRNA	28384023	28387157	.	-	.	ID=Os01t0688200-01;Name=Os01t0688200-01;Locus_id=Os01g0688200;Note=Similar to hydrolase%2C alpha/beta fold family protein.;Transcript_evidence=AK120982 (DDBJ%2C Best hit);ORF_evidence=NP_177867.1 (RefSeq);InterPro=Alpha/beta hydrolase fold-1 (IPR000073);NIAS_FLcDNA=J023042C18;TENOR=Os01t0688200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	28387156	28387157	.	-	.	Parent=Os01t0688200-01
Chr01	irgsp1_rep	CDS	28386880	28387155	.	-	0	Parent=Os01t0688200-01
Chr01	irgsp1_rep	CDS	28386367	28386396	.	-	0	Parent=Os01t0688200-01
Chr01	irgsp1_rep	CDS	28385906	28386035	.	-	0	Parent=Os01t0688200-01
Chr01	irgsp1_rep	CDS	28385662	28385808	.	-	2	Parent=Os01t0688200-01
Chr01	irgsp1_rep	CDS	28385439	28385569	.	-	2	Parent=Os01t0688200-01
Chr01	irgsp1_rep	CDS	28384858	28384995	.	-	0	Parent=Os01t0688200-01
Chr01	irgsp1_rep	CDS	28384500	28384598	.	-	0	Parent=Os01t0688200-01
Chr01	irgsp1_rep	CDS	28384156	28384365	.	-	0	Parent=Os01t0688200-01
Chr01	irgsp1_rep	three_prime_UTR	28384023	28384155	.	-	.	Parent=Os01t0688200-01
Chr01	irgsp1_rep	mRNA	28403683	28404693	.	+	.	ID=Os01t0688300-00;Name=Os01t0688300-00;Locus_id=Os01g0688300;CGSNL Gene Symbol=IPT8;CGSNL Gene Name=ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 8;Oryzabase Gene Symbol Synonym(s)=OsIPT8;Oryzabase Gene Name Synonym(s)=adenosine phosphate isopentenyltransferase 8%2C isopentenyltransferase 8;Note=Similar to Isopentenyl transferase IPT8.;Transcript_evidence=AB239805 (DDBJ%2C Best hit);ORF_evidence=B2XWS9 (UniProt);GO=Biological Process: tRNA processing (GO:0008033),Molecular Function: ATP binding (GO:0005524);InterPro=tRNA isopentenyltransferase (IPR002627);Oryzabase=6178;TENOR=Os01t0688300-00;KEGG=Os01t0688300-00
Chr01	irgsp1_rep	CDS	28403683	28404693	.	+	0	Parent=Os01t0688300-00
Chr01	irgsp1_rep	mRNA	28417330	28418601	.	-	.	ID=Os01t0688600-01;Name=Os01t0688600-01;Locus_id=Os01g0688600;Note=Protein of unknown function DUF1639 family protein.;Transcript_evidence=AK072744 (DDBJ%2C Best hit);ORF_evidence=B8A7P1 (UniProt);InterPro=Protein of unknown function DUF1639 (IPR012438);NIAS_FLcDNA=J023139D20;TENOR=Os01t0688600-01
Chr01	irgsp1_rep	five_prime_UTR	28418450	28418601	.	-	.	Parent=Os01t0688600-01
Chr01	irgsp1_rep	CDS	28417892	28418449	.	-	0	Parent=Os01t0688600-01
Chr01	irgsp1_rep	CDS	28417738	28417797	.	-	0	Parent=Os01t0688600-01
Chr01	irgsp1_rep	CDS	28417640	28417645	.	-	0	Parent=Os01t0688600-01
Chr01	irgsp1_rep	three_prime_UTR	28417330	28417639	.	-	.	Parent=Os01t0688600-01
Chr01	irgsp1_rep	mRNA	28417336	28418557	.	-	.	ID=Os01t0688600-02;Name=Os01t0688600-02;Locus_id=Os01g0688600;Note=Protein of unknown function DUF1639 family protein.;Transcript_evidence=AK099957 (DDBJ%2C Best hit);ORF_evidence=B8A7P1 (UniProt);InterPro=Protein of unknown function DUF1639 (IPR012438);NIAS_FLcDNA=J013125P17;TENOR=Os01t0688600-02
Chr01	irgsp1_rep	five_prime_UTR	28418450	28418557	.	-	.	Parent=Os01t0688600-02
Chr01	irgsp1_rep	CDS	28417892	28418449	.	-	0	Parent=Os01t0688600-02
Chr01	irgsp1_rep	CDS	28417738	28417797	.	-	0	Parent=Os01t0688600-02
Chr01	irgsp1_rep	CDS	28417640	28417645	.	-	0	Parent=Os01t0688600-02
Chr01	irgsp1_rep	three_prime_UTR	28417336	28417639	.	-	.	Parent=Os01t0688600-02
Chr01	irgsp1_rep	mRNA	28418679	28419047	.	-	.	ID=Os01t0688700-01;Name=Os01t0688700-01;Locus_id=Os01g0688700;Note=Hypothetical gene.;Transcript_evidence=AK107725 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-132-F01;TENOR=Os01t0688700-01
Chr01	irgsp1_rep	five_prime_UTR	28418948	28419047	.	-	.	Parent=Os01t0688700-01
Chr01	irgsp1_rep	CDS	28418679	28418947	.	-	0	Parent=Os01t0688700-01
Chr01	irgsp1_rep	mRNA	28425816	28427634	.	-	.	ID=Os01t0688900-00;Name=Os01t0688900-00;Locus_id=Os01g0688900;Note=Similar to HSP70B (heat shock protein 70B)%3B ATP binding.;Transcript_evidence=AK375303 (DDBJ);ORF_evidence=XP_002892893.1 (RefSeq);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Heat shock protein Hsp70 (IPR001023),Heat shock protein 70 (IPR013126),Heat shock protein 70%2C conserved site (IPR018181);TENOR=Os01t0688900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	28427566	28427634	.	-	.	Parent=Os01t0688900-00
Chr01	irgsp1_rep	CDS	28427343	28427565	.	-	0	Parent=Os01t0688900-00
Chr01	irgsp1_rep	CDS	28425957	28427245	.	-	2	Parent=Os01t0688900-00
Chr01	irgsp1_rep	three_prime_UTR	28425816	28425956	.	-	.	Parent=Os01t0688900-00
Chr01	irgsp1_rep	mRNA	28431993	28433405	.	+	.	ID=Os01t0689000-01;Name=Os01t0689000-01;Locus_id=Os01g0689000;Note=Protein of unknown function DUF1639 family protein.;Transcript_evidence=AK111204 (DDBJ%2C Best hit);ORF_evidence=XP_002456171.1 (RefSeq);InterPro=Protein of unknown function DUF1639 (IPR012438);NIAS_FLcDNA=002-178-E08;Expression=AK111204;TENOR=Os01t0689000-01;KEGG=Os01t0689000-01
Chr01	irgsp1_rep	five_prime_UTR	28431993	28432150	.	+	.	Parent=Os01t0689000-01
Chr01	irgsp1_rep	CDS	28432151	28432822	.	+	0	Parent=Os01t0689000-01
Chr01	irgsp1_rep	CDS	28433029	28433094	.	+	0	Parent=Os01t0689000-01
Chr01	irgsp1_rep	three_prime_UTR	28433095	28433405	.	+	.	Parent=Os01t0689000-01
Chr01	irgsp1_rep	mRNA	28447907	28458988	.	-	.	ID=Os01t0689451-01;Name=Os01t0689451-01;Locus_id=Os01g0689451;CGSNL Gene Symbol=HRZ1;CGSNL Gene Name=HAEMERYTHRIN MOTIF-CONTAINING RING- AND ZINC-FINGER PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsHRZ1;Oryzabase Gene Name Synonym(s)=Haemerythrin motif-containing Really Interesting New Gene (RING)-and Zinc-finger protein 1%2C Haemerythrin motif-containing RING- and Zinc-finger protein 1;Note=Similar to predicted protein.;Transcript_evidence=AK287439 (DDBJ%2C Best hit);ORF_evidence=B8A825 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C CHY-type (IPR008913),Haemerythrin/HHE cation-binding motif (IPR012312),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C CTCHY-type (IPR017921);NIAS_FLcDNA=J043014O13;Oryzabase=15055;TENOR=Os01t0689451-01;KEGG=Os01t0689451-01
Chr01	irgsp1_rep	five_prime_UTR	28458748	28458988	.	-	.	Parent=Os01t0689451-01
Chr01	irgsp1_rep	CDS	28458472	28458747	.	-	0	Parent=Os01t0689451-01
Chr01	irgsp1_rep	CDS	28457398	28457607	.	-	0	Parent=Os01t0689451-01
Chr01	irgsp1_rep	CDS	28456273	28456467	.	-	0	Parent=Os01t0689451-01
Chr01	irgsp1_rep	CDS	28455839	28456194	.	-	0	Parent=Os01t0689451-01
Chr01	irgsp1_rep	CDS	28454563	28454788	.	-	1	Parent=Os01t0689451-01
Chr01	irgsp1_rep	CDS	28454316	28454484	.	-	0	Parent=Os01t0689451-01
Chr01	irgsp1_rep	CDS	28452967	28454211	.	-	2	Parent=Os01t0689451-01
Chr01	irgsp1_rep	CDS	28451981	28452152	.	-	2	Parent=Os01t0689451-01
Chr01	irgsp1_rep	CDS	28451685	28451906	.	-	1	Parent=Os01t0689451-01
Chr01	irgsp1_rep	CDS	28450933	28451070	.	-	1	Parent=Os01t0689451-01
Chr01	irgsp1_rep	CDS	28449661	28449895	.	-	1	Parent=Os01t0689451-01
Chr01	irgsp1_rep	CDS	28449311	28449370	.	-	0	Parent=Os01t0689451-01
Chr01	irgsp1_rep	CDS	28448280	28448444	.	-	0	Parent=Os01t0689451-01
Chr01	irgsp1_rep	three_prime_UTR	28447907	28448279	.	-	.	Parent=Os01t0689451-01
Chr01	irgsp1_rep	mRNA	28447888	28458977	.	-	.	ID=Os01t0689451-02;Name=Os01t0689451-02;Locus_id=Os01g0689451;RAP-DB Gene Symbol Synonym(s)=OsHRZ1;RAP-DB Gene Name Synonym(s)=HEMERYTHRIN MOTIF-CONTAINING REALLY INTERESTING NEW GENE AND ZINC-FINGER PROTEIN1%2C Haemerythrin motif-containing RING- and Zn-finger protein 1;CGSNL Gene Symbol=HRZ1;CGSNL Gene Name=HAEMERYTHRIN MOTIF-CONTAINING RING- AND ZINC-FINGER PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsHRZ1;Oryzabase Gene Name Synonym(s)=Haemerythrin motif-containing Really Interesting New Gene (RING)-and Zinc-finger protein 1%2C Haemerythrin motif-containing RING- and Zinc-finger protein 1;Note=Iron-binding haemerythrin RING ubiquitin ligase%2C Iron-binding sensor%2C Regulation of iron acquisition;Transcript_evidence=BR001012,AK288394;ORF_evidence=V9G2Z0;GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Haemerythrin-like (IPR012312),Zinc finger%2C CHY-type (IPR008913),Zinc finger%2C CTCHY-type (IPR017921),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841);NIAS_FLcDNA=J090027M23;Manual Curation=September 5%2C 2017;Literature_PMID=28751317,24253678;Oryzabase=15055;TENOR=Os01t0689451-02;Subcellular location=nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	28458748	28458977	.	-	.	Parent=Os01t0689451-02
Chr01	irgsp1_rep	CDS	28458472	28458747	.	-	0	Parent=Os01t0689451-02
Chr01	irgsp1_rep	CDS	28457398	28457607	.	-	0	Parent=Os01t0689451-02
Chr01	irgsp1_rep	CDS	28456273	28456467	.	-	0	Parent=Os01t0689451-02
Chr01	irgsp1_rep	CDS	28455839	28456194	.	-	0	Parent=Os01t0689451-02
Chr01	irgsp1_rep	CDS	28454563	28454788	.	-	1	Parent=Os01t0689451-02
Chr01	irgsp1_rep	CDS	28454316	28454484	.	-	0	Parent=Os01t0689451-02
Chr01	irgsp1_rep	CDS	28452967	28454211	.	-	2	Parent=Os01t0689451-02
Chr01	irgsp1_rep	CDS	28451981	28452152	.	-	2	Parent=Os01t0689451-02
Chr01	irgsp1_rep	CDS	28451685	28451906	.	-	1	Parent=Os01t0689451-02
Chr01	irgsp1_rep	CDS	28450933	28451070	.	-	1	Parent=Os01t0689451-02
Chr01	irgsp1_rep	CDS	28449661	28449895	.	-	1	Parent=Os01t0689451-02
Chr01	irgsp1_rep	CDS	28449311	28449370	.	-	0	Parent=Os01t0689451-02
Chr01	irgsp1_rep	CDS	28448373	28448444	.	-	0	Parent=Os01t0689451-02
Chr01	irgsp1_rep	CDS	28448159	28448293	.	-	0	Parent=Os01t0689451-02
Chr01	irgsp1_rep	three_prime_UTR	28447888	28448158	.	-	.	Parent=Os01t0689451-02
Chr01	irgsp1_rep	mRNA	28467690	28471172	.	-	.	ID=Os01t0689600-01;Name=Os01t0689600-01;Locus_id=Os01g0689600;Note=Hypothetical conserved gene.;Transcript_evidence=AK241493 (DDBJ%2C Best hit);ORF_evidence=B8A826 (UniProt);NIAS_FLcDNA=J065167D05;TENOR=Os01t0689600-01;KEGG=Os01t0689600-01
Chr01	irgsp1_rep	CDS	28471008	28471172	.	-	0	Parent=Os01t0689600-01
Chr01	irgsp1_rep	CDS	28470086	28470146	.	-	0	Parent=Os01t0689600-01
Chr01	irgsp1_rep	CDS	28469868	28469986	.	-	2	Parent=Os01t0689600-01
Chr01	irgsp1_rep	CDS	28469142	28469191	.	-	0	Parent=Os01t0689600-01
Chr01	irgsp1_rep	CDS	28468036	28468078	.	-	1	Parent=Os01t0689600-01
Chr01	irgsp1_rep	three_prime_UTR	28467690	28468035	.	-	.	Parent=Os01t0689600-01
Chr01	irgsp1_rep	mRNA	28479278	28482802	.	+	.	ID=Os01t0689800-01;Name=Os01t0689800-01;Locus_id=Os01g0689800;Oryzabase Gene Symbol Synonym(s)=OsPOP3%2C POP3;Oryzabase Gene Name Synonym(s)=Prolyl Oligopeptidase 3%2C PROLYL OLIGOPEPTIDASE 3;Note=Alpha/beta hydrolase fold-1 domain containing protein.;Transcript_evidence=AK120572 (DDBJ%2C Best hit);ORF_evidence=NP_001151953.1 (RefSeq);NIAS_FLcDNA=J013134G21;Oryzabase=20013;Expression=AK120572;TENOR=Os01t0689800-01;KEGG=Os01t0689800-01
Chr01	irgsp1_rep	five_prime_UTR	28479278	28479422	.	+	.	Parent=Os01t0689800-01
Chr01	irgsp1_rep	CDS	28479423	28479796	.	+	0	Parent=Os01t0689800-01
Chr01	irgsp1_rep	CDS	28481177	28481213	.	+	1	Parent=Os01t0689800-01
Chr01	irgsp1_rep	CDS	28481321	28481557	.	+	0	Parent=Os01t0689800-01
Chr01	irgsp1_rep	CDS	28481634	28481681	.	+	0	Parent=Os01t0689800-01
Chr01	irgsp1_rep	CDS	28482006	28482404	.	+	0	Parent=Os01t0689800-01
Chr01	irgsp1_rep	three_prime_UTR	28482405	28482802	.	+	.	Parent=Os01t0689800-01
Chr01	irgsp1_rep	mRNA	28495111	28496176	.	-	.	ID=Os01t0689900-01;Name=Os01t0689900-01;Locus_id=Os01g0689900;CGSNL Gene Symbol=WAK10;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 10;Oryzabase Gene Symbol Synonym(s)=OsWAK10;Note=Hypothetical conserved gene.;Transcript_evidence=AK064656 (DDBJ%2C Best hit);ORF_evidence=A2ZWQ8 (UniProt);NIAS_FLcDNA=002-114-G02;Oryzabase=6910;Expression=AK064656;TENOR=Os01t0689900-01;KEGG=Os01t0689900-01
Chr01	irgsp1_rep	five_prime_UTR	28496137	28496176	.	-	.	Parent=Os01t0689900-01
Chr01	irgsp1_rep	CDS	28495189	28496136	.	-	0	Parent=Os01t0689900-01
Chr01	irgsp1_rep	three_prime_UTR	28495111	28495188	.	-	.	Parent=Os01t0689900-01
Chr01	irgsp1_rep	mRNA	28482950	28496128	.	-	.	ID=Os01t0689900-02;Name=Os01t0689900-02;Locus_id=Os01g0689900;CGSNL Gene Symbol=WAK10;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 10;Oryzabase Gene Symbol Synonym(s)=OsWAK10;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK102164 (DDBJ%2C Best hit);ORF_evidence=Q5N7Q7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033086H03;Oryzabase=6910;Expression=AK102164;TENOR=Os01t0689900-02;KEGG=Os01t0689900-02
Chr01	irgsp1_rep	five_prime_UTR	28496113	28496128	.	-	.	Parent=Os01t0689900-02
Chr01	irgsp1_rep	CDS	28495251	28496112	.	-	0	Parent=Os01t0689900-02
Chr01	irgsp1_rep	CDS	28484832	28484861	.	-	2	Parent=Os01t0689900-02
Chr01	irgsp1_rep	CDS	28484366	28484647	.	-	2	Parent=Os01t0689900-02
Chr01	irgsp1_rep	CDS	28483818	28484268	.	-	2	Parent=Os01t0689900-02
Chr01	irgsp1_rep	CDS	28483202	28483658	.	-	1	Parent=Os01t0689900-02
Chr01	irgsp1_rep	three_prime_UTR	28482950	28483201	.	-	.	Parent=Os01t0689900-02
Chr01	irgsp1_rep	mRNA	28482951	28488249	.	-	.	ID=Os01t0689900-03;Name=Os01t0689900-03;Locus_id=Os01g0689900;CGSNL Gene Symbol=WAK10;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 10;Oryzabase Gene Symbol Synonym(s)=OsWAK10;Note=Hypothetical conserved gene.;Transcript_evidence=AK100606 (DDBJ%2C Best hit);ORF_evidence=A2WTY6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023107H09;Oryzabase=6910;Expression=AK100606;TENOR=Os01t0689900-03;KEGG=Os01t0689900-03
Chr01	irgsp1_rep	five_prime_UTR	28488177	28488249	.	-	.	Parent=Os01t0689900-03
Chr01	irgsp1_rep	CDS	28487303	28488176	.	-	0	Parent=Os01t0689900-03
Chr01	irgsp1_rep	CDS	28484832	28484861	.	-	2	Parent=Os01t0689900-03
Chr01	irgsp1_rep	CDS	28484366	28484647	.	-	2	Parent=Os01t0689900-03
Chr01	irgsp1_rep	CDS	28483818	28484268	.	-	2	Parent=Os01t0689900-03
Chr01	irgsp1_rep	CDS	28483202	28483658	.	-	1	Parent=Os01t0689900-03
Chr01	irgsp1_rep	three_prime_UTR	28482951	28483201	.	-	.	Parent=Os01t0689900-03
Chr01	irgsp1_rep	mRNA	28482997	28487302	.	-	.	ID=Os01t0689900-04;Name=Os01t0689900-04;Locus_id=Os01g0689900;CGSNL Gene Symbol=WAK10;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 10;Oryzabase Gene Symbol Synonym(s)=OsWAK10;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK066381 (DDBJ%2C Best hit);ORF_evidence=NP_001148074.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013063B19;Oryzabase=6910;Expression=AK066381;TENOR=Os01t0689900-04;KEGG=Os01t0689900-04
Chr01	irgsp1_rep	five_prime_UTR	28484914	28487302	.	-	.	Parent=Os01t0689900-04
Chr01	irgsp1_rep	CDS	28484832	28484913	.	-	0	Parent=Os01t0689900-04
Chr01	irgsp1_rep	CDS	28484366	28484647	.	-	2	Parent=Os01t0689900-04
Chr01	irgsp1_rep	CDS	28483818	28484268	.	-	2	Parent=Os01t0689900-04
Chr01	irgsp1_rep	CDS	28483202	28483658	.	-	1	Parent=Os01t0689900-04
Chr01	irgsp1_rep	three_prime_UTR	28482997	28483201	.	-	.	Parent=Os01t0689900-04
Chr01	irgsp1_rep	mRNA	28483343	28488049	.	+	.	ID=Os01t0689975-00;Name=Os01t0689975-00;Locus_id=Os01g0689975;Note=Hypothetical protein.;Transcript_evidence=tplb0046c23 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0689975-00
Chr01	irgsp1_rep	CDS	28483343	28483655	.	+	0	Parent=Os01t0689975-00
Chr01	irgsp1_rep	CDS	28483815	28484280	.	+	2	Parent=Os01t0689975-00
Chr01	irgsp1_rep	CDS	28484374	28484416	.	+	1	Parent=Os01t0689975-00
Chr01	irgsp1_rep	three_prime_UTR	28484417	28484456	.	+	.	Parent=Os01t0689975-00
Chr01	irgsp1_rep	three_prime_UTR	28485505	28485699	.	+	.	Parent=Os01t0689975-00
Chr01	irgsp1_rep	three_prime_UTR	28487383	28488049	.	+	.	Parent=Os01t0689975-00
Chr01	irgsp1_rep	mRNA	28502293	28503364	.	-	.	ID=Os01t0690200-00;Name=Os01t0690200-00;Locus_id=Os01g0690200;Note=Hypothetical conserved gene.;Transcript_evidence=AK336227 (DDBJ);ORF_evidence=Q8S008 (UniProt);TENOR=Os01t0690200-00;KEGG=Os01t0690200-00
Chr01	irgsp1_rep	five_prime_UTR	28503256	28503364	.	-	.	Parent=Os01t0690200-00
Chr01	irgsp1_rep	CDS	28502293	28503255	.	-	0	Parent=Os01t0690200-00
Chr01	irgsp1_rep	mRNA	28504690	28509627	.	-	.	ID=Os01t0690333-00;Name=Os01t0690333-00;Locus_id=Os01g0690333;Note=Similar to Zinc finger%2C C3HC4 type family protein.;Transcript_evidence=EU957370 (DDBJ);ORF_evidence=Q2QYS1 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os01t0690333-00
Chr01	irgsp1_rep	five_prime_UTR	28509383	28509627	.	-	.	Parent=Os01t0690333-00
Chr01	irgsp1_rep	five_prime_UTR	28505065	28505081	.	-	.	Parent=Os01t0690333-00
Chr01	irgsp1_rep	CDS	28504690	28505064	.	-	0	Parent=Os01t0690333-00
Chr01	irgsp1_rep	mRNA	28513039	28517678	.	+	.	ID=Os01t0690600-01;Name=Os01t0690600-01;Locus_id=Os01g0690600;Note=Conserved hypothetical protein.;Transcript_evidence=AK241482 (DDBJ%2C Best hit);ORF_evidence=Q5N7S6 (UniProt);NIAS_FLcDNA=J065166H14;TENOR=Os01t0690600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	28513039	28513963	.	+	0	Parent=Os01t0690600-01
Chr01	irgsp1_rep	CDS	28516065	28516153	.	+	2	Parent=Os01t0690600-01
Chr01	irgsp1_rep	three_prime_UTR	28516154	28517678	.	+	.	Parent=Os01t0690600-01
Chr01	irgsp1_rep	mRNA	28524105	28534387	.	+	.	ID=Os01t0690800-01;Name=Os01t0690800-01;Locus_id=Os01g0690800;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK066430 (DDBJ%2C Best hit),AK073248 (DDBJ%2C Best hit);ORF_evidence=XP_002456174.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J013061O06,J033023I18;TENOR=Os01t0690800-01
Chr01	irgsp1_rep	five_prime_UTR	28524105	28524120	.	+	.	Parent=Os01t0690800-01
Chr01	irgsp1_rep	CDS	28524121	28525009	.	+	0	Parent=Os01t0690800-01
Chr01	irgsp1_rep	CDS	28531778	28531810	.	+	2	Parent=Os01t0690800-01
Chr01	irgsp1_rep	CDS	28532635	28533689	.	+	2	Parent=Os01t0690800-01
Chr01	irgsp1_rep	three_prime_UTR	28533690	28534387	.	+	.	Parent=Os01t0690800-01
Chr01	irgsp1_rep	mRNA	28526306	28526710	.	+	.	ID=Os01t0690900-00;Name=Os01t0690900-00;Locus_id=Os01g0690900;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2ZWR3 (UniProt);TENOR=Os01t0690900-00;KEGG=Os01t0690900-00
Chr01	irgsp1_rep	CDS	28526306	28526710	.	+	0	Parent=Os01t0690900-00
Chr01	irgsp1_rep	mRNA	28534821	28536497	.	+	.	ID=Os01t0691000-01;Name=Os01t0691000-01;Locus_id=Os01g0691000;Note=Similar to Acidic endochitinase SE2 precursor (EC 3.2.1.14).;Transcript_evidence=AK111427 (DDBJ%2C Best hit);ORF_evidence=NP_001150942.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 18%2C catalytic domain (IPR001223),Glycoside hydrolase%2C chitinase active site (IPR001579),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=002-182-H04;Expression=AK111427;TENOR=Os01t0691000-01;KEGG=Os01t0691000-01 (EC:3.2.1.14)
Chr01	irgsp1_rep	five_prime_UTR	28534821	28535155	.	+	.	Parent=Os01t0691000-01
Chr01	irgsp1_rep	CDS	28535156	28536107	.	+	0	Parent=Os01t0691000-01
Chr01	irgsp1_rep	CDS	28536247	28536371	.	+	2	Parent=Os01t0691000-01
Chr01	irgsp1_rep	three_prime_UTR	28536372	28536497	.	+	.	Parent=Os01t0691000-01
Chr01	irgsp1_rep	mRNA	28536737	28537615	.	+	.	ID=Os01t0691050-00;Name=Os01t0691050-00;Locus_id=Os01g0691050;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9EYX2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os01t0691050-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	28536737	28537615	.	+	0	Parent=Os01t0691050-00
Chr01	irgsp1_rep	mRNA	28537896	28538617	.	-	.	ID=Os01t0691100-01;Name=Os01t0691100-01;Locus_id=Os01g0691100;Oryzabase Gene Symbol Synonym(s)=OsLTP2.1%2C OsLtpII.1;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein 2.1%2C lipid transfer protein 2.1%2C type 2 non-specific lipid transfer protein 1;Note=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor domain containing protein.;Transcript_evidence=AK064045 (DDBJ%2C Best hit),AK122117 (DDBJ%2C Best hit);ORF_evidence=A2WTZ7 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=001-125-D06,J033128B08;Oryzabase=13530;TENOR=Os01t0691100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	28538617	28538617	.	-	.	Parent=Os01t0691100-01
Chr01	irgsp1_rep	CDS	28538242	28538616	.	-	0	Parent=Os01t0691100-01
Chr01	irgsp1_rep	three_prime_UTR	28537896	28538241	.	-	.	Parent=Os01t0691100-01
Chr01	irgsp1_rep	mRNA	28538115	28539701	.	+	.	ID=Os01t0691200-01;Name=Os01t0691200-01;Locus_id=Os01g0691200;Note=Hypothetical protein.;Transcript_evidence=AK111438 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-183-A04;Expression=AK111438;TENOR=Os01t0691200-01;KEGG=Os01t0691200-01
Chr01	irgsp1_rep	five_prime_UTR	28538115	28538965	.	+	.	Parent=Os01t0691200-01
Chr01	irgsp1_rep	CDS	28538966	28539406	.	+	0	Parent=Os01t0691200-01
Chr01	irgsp1_rep	three_prime_UTR	28539407	28539701	.	+	.	Parent=Os01t0691200-01
Chr01	irgsp1_rep	mRNA	28538881	28539369	.	-	.	ID=Os01t0691300-01;Name=Os01t0691300-01;Locus_id=Os01g0691300;Oryzabase Gene Symbol Synonym(s)=OsLTP2.2%2C OsLtpII.2;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein 2.2%2C lipid transfer protein 2.2%2C type 2 non-specific lipid transfer protein 2;Note=Plant lipid transfer protein and hydrophobic protein%2C helical domain containing protein.;Transcript_evidence=AK242026 (DDBJ%2C Best hit);ORF_evidence=NP_001043934.1 (RefSeq);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=J075112P14;Oryzabase=13531;TENOR=Os01t0691300-01;KEGG=Os01t0691300-01
Chr01	irgsp1_rep	five_prime_UTR	28539323	28539369	.	-	.	Parent=Os01t0691300-01
Chr01	irgsp1_rep	CDS	28538984	28539322	.	-	0	Parent=Os01t0691300-01
Chr01	irgsp1_rep	three_prime_UTR	28538881	28538983	.	-	.	Parent=Os01t0691300-01
Chr01	irgsp1_rep	mRNA	28539955	28541359	.	+	.	ID=Os01t0691400-00;Name=Os01t0691400-00;Locus_id=Os01g0691400;Note=Similar to seed maturation protein.;Transcript_evidence=FP096666 (DDBJ);ORF_evidence=NP_001150885.1 (RefSeq);GO=Cellular Component: endoplasmic reticulum (GO:0005783);InterPro=Reticulon (IPR003388);TENOR=Os01t0691400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	28539955	28539957	.	+	.	Parent=Os01t0691400-00
Chr01	irgsp1_rep	CDS	28539958	28540093	.	+	0	Parent=Os01t0691400-00
Chr01	irgsp1_rep	CDS	28540204	28540384	.	+	2	Parent=Os01t0691400-00
Chr01	irgsp1_rep	CDS	28540503	28540644	.	+	1	Parent=Os01t0691400-00
Chr01	irgsp1_rep	CDS	28540886	28540955	.	+	0	Parent=Os01t0691400-00
Chr01	irgsp1_rep	CDS	28541088	28541254	.	+	2	Parent=Os01t0691400-00
Chr01	irgsp1_rep	three_prime_UTR	28541255	28541359	.	+	.	Parent=Os01t0691400-00
Chr01	irgsp1_rep	mRNA	28541558	28545424	.	-	.	ID=Os01t0691500-01;Name=Os01t0691500-01;Locus_id=Os01g0691500;Note=Cytidylyltransferase domain containing protein.;Transcript_evidence=AK107426 (DDBJ%2C Best hit);ORF_evidence=NP_178231.2 (RefSeq);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=Cytidylyltransferase (IPR004820),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=002-128-A02;Expression=AK107426;TENOR=Os01t0691500-01;KEGG=Os01t0691500-01
Chr01	irgsp1_rep	five_prime_UTR	28545383	28545424	.	-	.	Parent=Os01t0691500-01
Chr01	irgsp1_rep	CDS	28545296	28545382	.	-	0	Parent=Os01t0691500-01
Chr01	irgsp1_rep	CDS	28545068	28545166	.	-	0	Parent=Os01t0691500-01
Chr01	irgsp1_rep	CDS	28544822	28544906	.	-	0	Parent=Os01t0691500-01
Chr01	irgsp1_rep	CDS	28544658	28544727	.	-	2	Parent=Os01t0691500-01
Chr01	irgsp1_rep	CDS	28544271	28544331	.	-	1	Parent=Os01t0691500-01
Chr01	irgsp1_rep	CDS	28544003	28544056	.	-	0	Parent=Os01t0691500-01
Chr01	irgsp1_rep	CDS	28543621	28543774	.	-	0	Parent=Os01t0691500-01
Chr01	irgsp1_rep	CDS	28543350	28543446	.	-	2	Parent=Os01t0691500-01
Chr01	irgsp1_rep	CDS	28542868	28542973	.	-	1	Parent=Os01t0691500-01
Chr01	irgsp1_rep	CDS	28542524	28542535	.	-	0	Parent=Os01t0691500-01
Chr01	irgsp1_rep	three_prime_UTR	28542429	28542523	.	-	.	Parent=Os01t0691500-01
Chr01	irgsp1_rep	three_prime_UTR	28542206	28542316	.	-	.	Parent=Os01t0691500-01
Chr01	irgsp1_rep	three_prime_UTR	28541558	28542124	.	-	.	Parent=Os01t0691500-01
Chr01	irgsp1_rep	mRNA	28541560	28545410	.	-	.	ID=Os01t0691500-02;Name=Os01t0691500-02;Locus_id=Os01g0691500;Note=Similar to Cytidyltransferase-related.;Transcript_evidence=AK073675 (DDBJ%2C Best hit);ORF_evidence=B4FI85 (UniProt);NIAS_FLcDNA=J033050M21;Expression=AK073675;TENOR=Os01t0691500-02;KEGG=Os01t0691500-02
Chr01	irgsp1_rep	five_prime_UTR	28545383	28545410	.	-	.	Parent=Os01t0691500-02
Chr01	irgsp1_rep	CDS	28545296	28545382	.	-	0	Parent=Os01t0691500-02
Chr01	irgsp1_rep	CDS	28545068	28545166	.	-	0	Parent=Os01t0691500-02
Chr01	irgsp1_rep	CDS	28544822	28544906	.	-	0	Parent=Os01t0691500-02
Chr01	irgsp1_rep	CDS	28544668	28544727	.	-	2	Parent=Os01t0691500-02
Chr01	irgsp1_rep	CDS	28544028	28544056	.	-	2	Parent=Os01t0691500-02
Chr01	irgsp1_rep	three_prime_UTR	28544003	28544027	.	-	.	Parent=Os01t0691500-02
Chr01	irgsp1_rep	three_prime_UTR	28543621	28543774	.	-	.	Parent=Os01t0691500-02
Chr01	irgsp1_rep	three_prime_UTR	28543350	28543446	.	-	.	Parent=Os01t0691500-02
Chr01	irgsp1_rep	three_prime_UTR	28542864	28542973	.	-	.	Parent=Os01t0691500-02
Chr01	irgsp1_rep	three_prime_UTR	28542429	28542535	.	-	.	Parent=Os01t0691500-02
Chr01	irgsp1_rep	three_prime_UTR	28542206	28542316	.	-	.	Parent=Os01t0691500-02
Chr01	irgsp1_rep	three_prime_UTR	28541560	28542124	.	-	.	Parent=Os01t0691500-02
Chr01	irgsp1_rep	mRNA	28545585	28553746	.	+	.	ID=Os01t0691600-01;Name=Os01t0691600-01;Locus_id=Os01g0691600;Oryzabase Gene Symbol Synonym(s)=OsXPB2;Oryzabase Gene Name Synonym(s)=Xeroderma pigmentosum (XP) complementation group of protein B2;Note=Similar to DNA repair helicase XPB2 (EC 3.6.1.-) (XPB homolog 2) (ERCC3 homolog 2) (RAD25 homolog 2) (AtXPB2).;Transcript_evidence=AK103297 (DDBJ%2C Best hit);ORF_evidence=NP_568592.1 (RefSeq);GO=Biological Process: nucleotide-excision repair (GO:0006289),Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP-dependent DNA helicase activity (GO:0004003),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity (GO:0016787);InterPro=Xeroderma pigmentosum group B protein (XP-B) (IPR001161),Helicase/UvrB domain (IPR006935),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J033125B04;Oryzabase=15522;Expression=AK103297;TENOR=Os01t0691600-01;KEGG=Os01t0691600-01 (EC:3.6.1.-)
Chr01	irgsp1_rep	five_prime_UTR	28545585	28545693	.	+	.	Parent=Os01t0691600-01
Chr01	irgsp1_rep	CDS	28545694	28545709	.	+	0	Parent=Os01t0691600-01
Chr01	irgsp1_rep	CDS	28545816	28545926	.	+	2	Parent=Os01t0691600-01
Chr01	irgsp1_rep	CDS	28546054	28546222	.	+	2	Parent=Os01t0691600-01
Chr01	irgsp1_rep	CDS	28547584	28547806	.	+	1	Parent=Os01t0691600-01
Chr01	irgsp1_rep	CDS	28547891	28547947	.	+	0	Parent=Os01t0691600-01
Chr01	irgsp1_rep	CDS	28548461	28548604	.	+	0	Parent=Os01t0691600-01
Chr01	irgsp1_rep	CDS	28548682	28548762	.	+	0	Parent=Os01t0691600-01
Chr01	irgsp1_rep	CDS	28549769	28549856	.	+	0	Parent=Os01t0691600-01
Chr01	irgsp1_rep	CDS	28550322	28550659	.	+	2	Parent=Os01t0691600-01
Chr01	irgsp1_rep	CDS	28550754	28550829	.	+	0	Parent=Os01t0691600-01
Chr01	irgsp1_rep	CDS	28550917	28551110	.	+	2	Parent=Os01t0691600-01
Chr01	irgsp1_rep	CDS	28551589	28551752	.	+	0	Parent=Os01t0691600-01
Chr01	irgsp1_rep	CDS	28551823	28551904	.	+	1	Parent=Os01t0691600-01
Chr01	irgsp1_rep	three_prime_UTR	28551905	28552093	.	+	.	Parent=Os01t0691600-01
Chr01	irgsp1_rep	three_prime_UTR	28552582	28552662	.	+	.	Parent=Os01t0691600-01
Chr01	irgsp1_rep	three_prime_UTR	28552786	28552845	.	+	.	Parent=Os01t0691600-01
Chr01	irgsp1_rep	three_prime_UTR	28552923	28553244	.	+	.	Parent=Os01t0691600-01
Chr01	irgsp1_rep	three_prime_UTR	28553342	28553746	.	+	.	Parent=Os01t0691600-01
Chr01	irgsp1_rep	mRNA	28548694	28553545	.	+	.	ID=Os01t0691600-02;Name=Os01t0691600-02;Locus_id=Os01g0691600;Oryzabase Gene Symbol Synonym(s)=OsXPB2;Oryzabase Gene Name Synonym(s)=Xeroderma pigmentosum (XP) complementation group of protein B2;Note=Similar to XPB1 (ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1)%3B ATP-dependent helicase.;Transcript_evidence=AK060447 (DDBJ%2C Best hit);ORF_evidence=NP_568592.1 (RefSeq);GO=Biological Process: nucleotide-excision repair (GO:0006289),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP-dependent DNA helicase activity (GO:0004003),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity (GO:0016787);InterPro=Xeroderma pigmentosum group B protein (XP-B) (IPR001161),Helicase%2C C-terminal (IPR001650),Helicase/UvrB domain (IPR006935),DEAD-like helicase (IPR014001);NIAS_FLcDNA=001-011-F08;Oryzabase=15522;Expression=AK060447;TENOR=Os01t0691600-02;KEGG=Os01t0691600-02 (EC:3.6.1.-)
Chr01	irgsp1_rep	CDS	28548694	28548762	.	+	0	Parent=Os01t0691600-02
Chr01	irgsp1_rep	CDS	28549769	28549856	.	+	0	Parent=Os01t0691600-02
Chr01	irgsp1_rep	CDS	28550322	28550659	.	+	2	Parent=Os01t0691600-02
Chr01	irgsp1_rep	CDS	28550754	28550829	.	+	0	Parent=Os01t0691600-02
Chr01	irgsp1_rep	CDS	28550917	28551110	.	+	2	Parent=Os01t0691600-02
Chr01	irgsp1_rep	CDS	28551589	28551752	.	+	0	Parent=Os01t0691600-02
Chr01	irgsp1_rep	CDS	28551823	28551895	.	+	1	Parent=Os01t0691600-02
Chr01	irgsp1_rep	CDS	28551980	28552093	.	+	0	Parent=Os01t0691600-02
Chr01	irgsp1_rep	CDS	28552582	28552662	.	+	0	Parent=Os01t0691600-02
Chr01	irgsp1_rep	CDS	28552786	28552845	.	+	0	Parent=Os01t0691600-02
Chr01	irgsp1_rep	CDS	28552923	28553006	.	+	0	Parent=Os01t0691600-02
Chr01	irgsp1_rep	CDS	28553102	28553244	.	+	0	Parent=Os01t0691600-02
Chr01	irgsp1_rep	CDS	28553342	28553426	.	+	1	Parent=Os01t0691600-02
Chr01	irgsp1_rep	three_prime_UTR	28553427	28553545	.	+	.	Parent=Os01t0691600-02
Chr01	irgsp1_rep	mRNA	28555960	28560504	.	+	.	ID=Os01t0691700-01;Name=Os01t0691700-01;Locus_id=Os01g0691700;Oryzabase Gene Symbol Synonym(s)=OsPP13%2C PPP6;Oryzabase Gene Name Synonym(s)=Protein phosphatase 13%2C Serine/threonine-protein phosphatase 6;Note=Similar to Serine/threonine protein phosphatase 2A.;Transcript_evidence=AK068018 (DDBJ%2C Best hit);ORF_evidence=B8A802 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Metallophosphoesterase domain (IPR004843),Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (IPR006186);NIAS_FLcDNA=J013134M14;Oryzabase=18627;Expression=AK068018;TENOR=Os01t0691700-01;KEGG=Os01t0691700-01 (EC:3.1.3.16)
Chr01	irgsp1_rep	five_prime_UTR	28555960	28556191	.	+	.	Parent=Os01t0691700-01
Chr01	irgsp1_rep	CDS	28556192	28556272	.	+	0	Parent=Os01t0691700-01
Chr01	irgsp1_rep	CDS	28556511	28556657	.	+	0	Parent=Os01t0691700-01
Chr01	irgsp1_rep	CDS	28556770	28556837	.	+	0	Parent=Os01t0691700-01
Chr01	irgsp1_rep	CDS	28557514	28557571	.	+	1	Parent=Os01t0691700-01
Chr01	irgsp1_rep	CDS	28558217	28558327	.	+	0	Parent=Os01t0691700-01
Chr01	irgsp1_rep	CDS	28558411	28558461	.	+	0	Parent=Os01t0691700-01
Chr01	irgsp1_rep	CDS	28559051	28559194	.	+	0	Parent=Os01t0691700-01
Chr01	irgsp1_rep	CDS	28559313	28559408	.	+	0	Parent=Os01t0691700-01
Chr01	irgsp1_rep	CDS	28559524	28559595	.	+	0	Parent=Os01t0691700-01
Chr01	irgsp1_rep	CDS	28560135	28560218	.	+	0	Parent=Os01t0691700-01
Chr01	irgsp1_rep	three_prime_UTR	28560219	28560504	.	+	.	Parent=Os01t0691700-01
Chr01	irgsp1_rep	mRNA	28566638	28567684	.	-	.	ID=Os01t0692000-01;Name=Os01t0692000-01;Locus_id=Os01g0692000;CGSNL Gene Symbol=GSTU40;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 40;Oryzabase Gene Symbol Synonym(s)=OsGSTU40;Note=Similar to Glutathione S-transferase GSTU6.;Transcript_evidence=AK064650 (DDBJ%2C Best hit);ORF_evidence=B6TLM5 (UniProt);InterPro=Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=002-114-D12;Oryzabase=9557;TENOR=Os01t0692000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	28567179	28567684	.	-	.	Parent=Os01t0692000-01
Chr01	irgsp1_rep	CDS	28566789	28567178	.	-	0	Parent=Os01t0692000-01
Chr01	irgsp1_rep	three_prime_UTR	28566638	28566788	.	-	.	Parent=Os01t0692000-01
Chr01	irgsp1_rep	mRNA	28568799	28569539	.	+	.	ID=Os01t0692050-00;Name=Os01t0692050-00;Locus_id=Os01g0692050;Note=Conserved hypothetical protein.;Transcript_evidence=EU942843 (DDBJ);ORF_evidence=NP_001065143.1 (RefSeq);TENOR=Os01t0692050-00
Chr01	irgsp1_rep	CDS	28568799	28569318	.	+	0	Parent=Os01t0692050-00
Chr01	irgsp1_rep	CDS	28569394	28569446	.	+	2	Parent=Os01t0692050-00
Chr01	irgsp1_rep	three_prime_UTR	28569447	28569539	.	+	.	Parent=Os01t0692050-00
Chr01	irgsp1_rep	mRNA	28568839	28569792	.	-	.	ID=Os01t0692100-01;Name=Os01t0692100-01;Locus_id=Os01g0692100;CGSNL Gene Symbol=GSTU39;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 39;Oryzabase Gene Symbol Synonym(s)=OsGSTU39;Oryzabase Gene Name Synonym(s)=glutathione transferase U39;Note=Glutathione S-transferase%2C C-terminal-like domain containing protein.;Transcript_evidence=AK243150 (DDBJ%2C Best hit);ORF_evidence=NP_001147207.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=J100032K22;Oryzabase=9556;TENOR=Os01t0692100-01;KEGG=Os01t0692100-01
Chr01	irgsp1_rep	five_prime_UTR	28569767	28569792	.	-	.	Parent=Os01t0692100-01
Chr01	irgsp1_rep	CDS	28569431	28569766	.	-	0	Parent=Os01t0692100-01
Chr01	irgsp1_rep	CDS	28568976	28569353	.	-	0	Parent=Os01t0692100-01
Chr01	irgsp1_rep	three_prime_UTR	28568839	28568975	.	-	.	Parent=Os01t0692100-01
Chr01	irgsp1_rep	mRNA	28572037	28572921	.	+	.	ID=Os01t0692200-01;Name=Os01t0692200-01;Locus_id=Os01g0692200;Note=Conserved hypothetical protein.;Transcript_evidence=AK111036 (DDBJ%2C Best hit);ORF_evidence=Q5N7R9 (UniProt);NIAS_FLcDNA=002-175-A08;Expression=AK111036;TENOR=Os01t0692200-01;KEGG=Os01t0692200-01
Chr01	irgsp1_rep	five_prime_UTR	28572037	28572037	.	+	.	Parent=Os01t0692200-01
Chr01	irgsp1_rep	CDS	28572038	28572748	.	+	0	Parent=Os01t0692200-01
Chr01	irgsp1_rep	three_prime_UTR	28572749	28572921	.	+	.	Parent=Os01t0692200-01
Chr01	irgsp1_rep	mRNA	28573135	28575675	.	+	.	ID=Os01t0692300-01;Name=Os01t0692300-01;Locus_id=Os01g0692300;Note=Protein of unknown function DUF827%2C plant domain containing protein.;Transcript_evidence=AK120588 (DDBJ%2C Best hit);ORF_evidence=A2ZWS4 (UniProt);InterPro=Protein of unknown function DUF827%2C plant (IPR008545);NIAS_FLcDNA=J013145F17;Expression=AK120588;TENOR=Os01t0692300-01;KEGG=Os01t0692300-01
Chr01	irgsp1_rep	five_prime_UTR	28573135	28573255	.	+	.	Parent=Os01t0692300-01
Chr01	irgsp1_rep	CDS	28573256	28573387	.	+	0	Parent=Os01t0692300-01
Chr01	irgsp1_rep	CDS	28573534	28573859	.	+	0	Parent=Os01t0692300-01
Chr01	irgsp1_rep	CDS	28573929	28575300	.	+	1	Parent=Os01t0692300-01
Chr01	irgsp1_rep	three_prime_UTR	28575301	28575675	.	+	.	Parent=Os01t0692300-01
Chr01	irgsp1_rep	mRNA	28575815	28576674	.	-	.	ID=Os01t0692400-01;Name=Os01t0692400-01;Locus_id=Os01g0692400;Note=Conserved hypothetical protein.;Transcript_evidence=AK110723 (DDBJ%2C Best hit);ORF_evidence=B9EYX6 (UniProt);NIAS_FLcDNA=002-170-E02;Expression=AK110723;TENOR=Os01t0692400-01;KEGG=Os01t0692400-01
Chr01	irgsp1_rep	five_prime_UTR	28576599	28576674	.	-	.	Parent=Os01t0692400-01
Chr01	irgsp1_rep	CDS	28576170	28576598	.	-	0	Parent=Os01t0692400-01
Chr01	irgsp1_rep	three_prime_UTR	28575815	28576169	.	-	.	Parent=Os01t0692400-01
Chr01	irgsp1_rep	mRNA	28578164	28582752	.	-	.	ID=Os01t0692500-00;Name=Os01t0692500-00;Locus_id=Os01g0692500;Note=Hypothetical protein.;Transcript_evidence=tplb0032d16 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0692500-00
Chr01	irgsp1_rep	five_prime_UTR	28582467	28582752	.	-	.	Parent=Os01t0692500-00
Chr01	irgsp1_rep	five_prime_UTR	28582259	28582398	.	-	.	Parent=Os01t0692500-00
Chr01	irgsp1_rep	five_prime_UTR	28581590	28581747	.	-	.	Parent=Os01t0692500-00
Chr01	irgsp1_rep	five_prime_UTR	28580995	28581187	.	-	.	Parent=Os01t0692500-00
Chr01	irgsp1_rep	five_prime_UTR	28580838	28580918	.	-	.	Parent=Os01t0692500-00
Chr01	irgsp1_rep	five_prime_UTR	28580570	28580655	.	-	.	Parent=Os01t0692500-00
Chr01	irgsp1_rep	five_prime_UTR	28579778	28580473	.	-	.	Parent=Os01t0692500-00
Chr01	irgsp1_rep	CDS	28579773	28579777	.	-	0	Parent=Os01t0692500-00
Chr01	irgsp1_rep	CDS	28578647	28578716	.	-	1	Parent=Os01t0692500-00
Chr01	irgsp1_rep	CDS	28578164	28578557	.	-	0	Parent=Os01t0692500-00
Chr01	irgsp1_rep	mRNA	28578167	28582863	.	+	.	ID=Os01t0692600-01;Name=Os01t0692600-01;Locus_id=Os01g0692600;Note=Uncharacterised conserved protein UCP031088%2C alpha/beta hydrolase%2C At1g15070 domain containing protein.;Transcript_evidence=AK100145 (DDBJ%2C Best hit);ORF_evidence=E4MY19 (UniProt);InterPro=Uncharacterised conserved protein UCP031088%2C alpha/beta hydrolase%2C At1g15070 (IPR016969);NIAS_FLcDNA=J023012J21;Expression=AK100145;TENOR=Os01t0692600-01;KEGG=Os01t0692600-01
Chr01	irgsp1_rep	five_prime_UTR	28578167	28578188	.	+	.	Parent=Os01t0692600-01
Chr01	irgsp1_rep	CDS	28578189	28578539	.	+	0	Parent=Os01t0692600-01
Chr01	irgsp1_rep	CDS	28578629	28578706	.	+	0	Parent=Os01t0692600-01
Chr01	irgsp1_rep	CDS	28579760	28580458	.	+	0	Parent=Os01t0692600-01
Chr01	irgsp1_rep	CDS	28580554	28580656	.	+	0	Parent=Os01t0692600-01
Chr01	irgsp1_rep	CDS	28580839	28580939	.	+	2	Parent=Os01t0692600-01
Chr01	irgsp1_rep	CDS	28581015	28581189	.	+	0	Parent=Os01t0692600-01
Chr01	irgsp1_rep	CDS	28581586	28581756	.	+	2	Parent=Os01t0692600-01
Chr01	irgsp1_rep	CDS	28582277	28582377	.	+	2	Parent=Os01t0692600-01
Chr01	irgsp1_rep	CDS	28582449	28582514	.	+	0	Parent=Os01t0692600-01
Chr01	irgsp1_rep	three_prime_UTR	28582515	28582863	.	+	.	Parent=Os01t0692600-01
Chr01	irgsp1_rep	mRNA	28583152	28586500	.	-	.	ID=Os01t0692700-01;Name=Os01t0692700-01;Locus_id=Os01g0692700;Oryzabase Gene Symbol Synonym(s)=OsRFPH2-23;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPH2-23%2C RING-H2 protein 23;Note=Similar to Protein binding protein.;Transcript_evidence=AK065626 (DDBJ%2C Best hit);ORF_evidence=B6T287 (UniProt);NIAS_FLcDNA=J013028F14;Oryzabase=11784;Expression=AK065626;TENOR=Os01t0692700-01;KEGG=Os01t0692700-01
Chr01	irgsp1_rep	five_prime_UTR	28586499	28586500	.	-	.	Parent=Os01t0692700-01
Chr01	irgsp1_rep	CDS	28586376	28586498	.	-	0	Parent=Os01t0692700-01
Chr01	irgsp1_rep	CDS	28585578	28585781	.	-	0	Parent=Os01t0692700-01
Chr01	irgsp1_rep	three_prime_UTR	28583779	28585577	.	-	.	Parent=Os01t0692700-01
Chr01	irgsp1_rep	three_prime_UTR	28583552	28583704	.	-	.	Parent=Os01t0692700-01
Chr01	irgsp1_rep	three_prime_UTR	28583152	28583442	.	-	.	Parent=Os01t0692700-01
Chr01	irgsp1_rep	mRNA	28599291	28600408	.	+	.	ID=Os01t0693100-00;Name=Os01t0693100-00;Locus_id=Os01g0693100;Note=Conserved hypothetical protein.;Transcript_evidence=AK374981 (DDBJ);ORF_evidence=Q8RZY1 (UniProt);TENOR=Os01t0693100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	28599291	28599294	.	+	.	Parent=Os01t0693100-00
Chr01	irgsp1_rep	CDS	28599295	28599516	.	+	0	Parent=Os01t0693100-00
Chr01	irgsp1_rep	CDS	28599730	28600245	.	+	0	Parent=Os01t0693100-00
Chr01	irgsp1_rep	three_prime_UTR	28600246	28600408	.	+	.	Parent=Os01t0693100-00
Chr01	irgsp1_rep	mRNA	28605063	28608212	.	+	.	ID=Os01t0693300-01;Name=Os01t0693300-01;Locus_id=Os01g0693300;Note=Similar to Lipid phosphate phosphatase 2 (EC 3.1.3.-) (AtLPP2) (Phosphatidic acid phosphatase 2) (AtPAP2) (Prenyl diphosphate phosphatase).;Transcript_evidence=AK101201 (DDBJ%2C Best hit);ORF_evidence=B6SSC1 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824);InterPro=Phosphatidic acid phosphatase type 2/haloperoxidase (IPR000326),Phosphatidic acid phosphatase/chloroperoxidase%2C N-terminal (IPR016118);NIAS_FLcDNA=J033030N09;Expression=AK101201;TENOR=Os01t0693300-01;KEGG=Os01t0693300-01
Chr01	irgsp1_rep	five_prime_UTR	28605063	28605286	.	+	.	Parent=Os01t0693300-01
Chr01	irgsp1_rep	five_prime_UTR	28605489	28605564	.	+	.	Parent=Os01t0693300-01
Chr01	irgsp1_rep	CDS	28605565	28605798	.	+	0	Parent=Os01t0693300-01
Chr01	irgsp1_rep	CDS	28605889	28605976	.	+	0	Parent=Os01t0693300-01
Chr01	irgsp1_rep	CDS	28606065	28606174	.	+	2	Parent=Os01t0693300-01
Chr01	irgsp1_rep	CDS	28606281	28606374	.	+	0	Parent=Os01t0693300-01
Chr01	irgsp1_rep	CDS	28606567	28606755	.	+	2	Parent=Os01t0693300-01
Chr01	irgsp1_rep	CDS	28606877	28606936	.	+	2	Parent=Os01t0693300-01
Chr01	irgsp1_rep	CDS	28607233	28607426	.	+	2	Parent=Os01t0693300-01
Chr01	irgsp1_rep	three_prime_UTR	28607427	28608212	.	+	.	Parent=Os01t0693300-01
Chr01	irgsp1_rep	mRNA	28619585	28621117	.	-	.	ID=Os01t0693400-01;Name=Os01t0693400-01;Locus_id=Os01g0693400;RAP-DB Gene Symbol Synonym(s)=OsRAV11;RAP-DB Gene Name Synonym(s)=RELATED TO ABI3 AND VP1 11;CGSNL Gene Symbol=AP2/EREBP127;CGSNL Gene Name=APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 127;Oryzabase Gene Symbol Synonym(s)=AP2/EREBP#127%2C OsRAV11%2C RAV11;Oryzabase Gene Name Synonym(s)=APETALA2/ethylene-responsive element binding protein 127%2C RAV transcription factor 11;Note=RAV family protein%2C Regulation of carpel development%2C Control of seed size;Transcript_evidence=AK241984;ORF_evidence=Q8RZX9;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-binding transcription factor activity (GO:0003700);InterPro=DNA-binding domain superfamily (IPR016177),AP2/ERF domain superfamily (IPR036955),DNA-binding pseudobarrel domain superfamily (IPR015300),AP2/ERF domain (IPR001471),B3 DNA binding domain (IPR003340);NIAS_FLcDNA=J075097P17;Manual Curation=June 23%2C 2020;Literature_PMID=32554473;Oryzabase=10644;TENOR=Os01t0693400-01;KEGG=Os01t0693400-01
Chr01	irgsp1_rep	five_prime_UTR	28620984	28621117	.	-	.	Parent=Os01t0693400-01
Chr01	irgsp1_rep	CDS	28619802	28620983	.	-	0	Parent=Os01t0693400-01
Chr01	irgsp1_rep	three_prime_UTR	28619585	28619801	.	-	.	Parent=Os01t0693400-01
Chr01	irgsp1_rep	mRNA	28625335	28625865	.	+	.	ID=Os01t0693466-00;Name=Os01t0693466-00;Locus_id=Os01g0693466;Note=Hypothetical gene.;Transcript_evidence=CT834875 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os01t0693466-00;KEGG=Os01t0693466-00
Chr01	irgsp1_rep	five_prime_UTR	28625335	28625336	.	+	.	Parent=Os01t0693466-00
Chr01	irgsp1_rep	CDS	28625337	28625585	.	+	0	Parent=Os01t0693466-00
Chr01	irgsp1_rep	three_prime_UTR	28625586	28625865	.	+	.	Parent=Os01t0693466-00
Chr01	irgsp1_rep	mRNA	28635386	28638647	.	-	.	ID=Os01t0693532-01;Name=Os01t0693532-01;Locus_id=Os01g0693532;Note=Conserved hypothetical protein.;Transcript_evidence=AK288974 (DDBJ%2C Best hit);ORF_evidence=Q6ZG04 (UniProt);NIAS_FLcDNA=J090085H01;TENOR=Os01t0693532-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	28635614	28638647	.	-	.	Parent=Os01t0693532-01
Chr01	irgsp1_rep	CDS	28635461	28635613	.	-	0	Parent=Os01t0693532-01
Chr01	irgsp1_rep	three_prime_UTR	28635386	28635460	.	-	.	Parent=Os01t0693532-01
Chr01	irgsp1_rep	mRNA	28651357	28651761	.	-	.	ID=Os01t0693700-00;Name=Os01t0693700-00;Locus_id=Os01g0693700;Note=Similar to Nitrate reductase [NAD(P)H].;Transcript_evidence=BT086108 (DDBJ);ORF_evidence=P27968 (UniProt);TENOR=Os01t0693700-00
Chr01	irgsp1_rep	five_prime_UTR	28651642	28651761	.	-	.	Parent=Os01t0693700-00
Chr01	irgsp1_rep	CDS	28651390	28651641	.	-	0	Parent=Os01t0693700-00
Chr01	irgsp1_rep	three_prime_UTR	28651357	28651389	.	-	.	Parent=Os01t0693700-00
Chr01	irgsp1_rep	mRNA	28654048	28655948	.	-	.	ID=Os01t0693800-01;Name=Os01t0693800-01;Locus_id=Os01g0693800;Note=Similar to Threonine synthase%2C chloroplast precursor (EC 4.2.3.1) (TS).;Transcript_evidence=AK073138 (DDBJ%2C Best hit),AK109336 (DDBJ%2C Best hit);ORF_evidence=NP_001149770.1 (RefSeq);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: metabolic process (GO:0008152),Biological Process: threonine biosynthetic process (GO:0009088),Molecular Function: catalytic activity (GO:0003824),Molecular Function: threonine synthase activity (GO:0004795),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Serine/threonine dehydratase%2C pyridoxal-phosphate-binding site (IPR000634),Pyridoxal phosphate-dependent enzyme%2C beta subunit (IPR001926),Threonine synthase (IPR004450);NIAS_FLcDNA=J033024E01,006-202-C12;Expression=AK073138;TENOR=Os01t0693800-01;KEGG=Os01t0693800-01 (EC:4.2.3.1)
Chr01	irgsp1_rep	five_prime_UTR	28655878	28655948	.	-	.	Parent=Os01t0693800-01
Chr01	irgsp1_rep	CDS	28654300	28655877	.	-	0	Parent=Os01t0693800-01
Chr01	irgsp1_rep	three_prime_UTR	28654048	28654299	.	-	.	Parent=Os01t0693800-01
Chr01	irgsp1_rep	mRNA	28657665	28660499	.	-	.	ID=Os01t0693900-01;Name=Os01t0693900-01;Locus_id=Os01g0693900;Oryzabase Gene Name Synonym(s)=peptidyl-tRNA hydrolase;Note=Peptidyl-tRNA hydrolase family protein.;Transcript_evidence=AK066034 (DDBJ%2C Best hit);ORF_evidence=B7EPP3 (UniProt);GO=Molecular Function: aminoacyl-tRNA hydrolase activity (GO:0004045);InterPro=Peptidyl-tRNA hydrolase (IPR001328),Peptidyl-tRNA hydrolase%2C conserved site (IPR018171);NIAS_FLcDNA=J013047M19;Oryzabase=21864;Expression=AK066034;TENOR=Os01t0693900-01;KEGG=Os01t0693900-01 (EC:3.1.1.29)
Chr01	irgsp1_rep	five_prime_UTR	28660424	28660499	.	-	.	Parent=Os01t0693900-01
Chr01	irgsp1_rep	CDS	28660202	28660423	.	-	0	Parent=Os01t0693900-01
Chr01	irgsp1_rep	CDS	28659631	28659715	.	-	0	Parent=Os01t0693900-01
Chr01	irgsp1_rep	CDS	28659281	28659348	.	-	2	Parent=Os01t0693900-01
Chr01	irgsp1_rep	CDS	28659143	28659193	.	-	0	Parent=Os01t0693900-01
Chr01	irgsp1_rep	CDS	28658981	28659054	.	-	0	Parent=Os01t0693900-01
Chr01	irgsp1_rep	CDS	28658418	28658476	.	-	1	Parent=Os01t0693900-01
Chr01	irgsp1_rep	CDS	28658271	28658347	.	-	2	Parent=Os01t0693900-01
Chr01	irgsp1_rep	CDS	28658046	28658162	.	-	0	Parent=Os01t0693900-01
Chr01	irgsp1_rep	three_prime_UTR	28657665	28658045	.	-	.	Parent=Os01t0693900-01
Chr01	irgsp1_rep	mRNA	28657603	28660474	.	-	.	ID=Os01t0693900-02;Name=Os01t0693900-02;Locus_id=Os01g0693900;Oryzabase Gene Name Synonym(s)=peptidyl-tRNA hydrolase;Note=Peptidyl-tRNA hydrolase family protein.;Transcript_evidence=AK099894 (DDBJ%2C Best hit);ORF_evidence=NP_001148279.1 (RefSeq);GO=Molecular Function: aminoacyl-tRNA hydrolase activity (GO:0004045);InterPro=Peptidyl-tRNA hydrolase (IPR001328),Peptidyl-tRNA hydrolase%2C conserved site (IPR018171);NIAS_FLcDNA=J013113G18;Oryzabase=21864;Expression=AK099894;TENOR=Os01t0693900-02;KEGG=Os01t0693900-02 (EC:3.1.1.29)
Chr01	irgsp1_rep	five_prime_UTR	28660424	28660474	.	-	.	Parent=Os01t0693900-02
Chr01	irgsp1_rep	CDS	28660202	28660423	.	-	0	Parent=Os01t0693900-02
Chr01	irgsp1_rep	CDS	28659631	28659715	.	-	0	Parent=Os01t0693900-02
Chr01	irgsp1_rep	CDS	28659281	28659348	.	-	2	Parent=Os01t0693900-02
Chr01	irgsp1_rep	CDS	28659143	28659193	.	-	0	Parent=Os01t0693900-02
Chr01	irgsp1_rep	CDS	28658981	28659054	.	-	0	Parent=Os01t0693900-02
Chr01	irgsp1_rep	CDS	28658418	28658476	.	-	1	Parent=Os01t0693900-02
Chr01	irgsp1_rep	CDS	28658271	28658347	.	-	2	Parent=Os01t0693900-02
Chr01	irgsp1_rep	CDS	28658046	28658162	.	-	0	Parent=Os01t0693900-02
Chr01	irgsp1_rep	three_prime_UTR	28657603	28658045	.	-	.	Parent=Os01t0693900-02
Chr01	irgsp1_rep	mRNA	28666309	28668105	.	+	.	ID=Os01t0694000-01;Name=Os01t0694000-01;Locus_id=Os01g0694000;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK064608 (DDBJ%2C Best hit);ORF_evidence=B9EYY2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=002-113-A08;Expression=AK064608;TENOR=Os01t0694000-01;KEGG=Os01t0694000-01
Chr01	irgsp1_rep	five_prime_UTR	28666309	28666309	.	+	.	Parent=Os01t0694000-01
Chr01	irgsp1_rep	CDS	28666310	28667408	.	+	0	Parent=Os01t0694000-01
Chr01	irgsp1_rep	CDS	28667505	28667869	.	+	2	Parent=Os01t0694000-01
Chr01	irgsp1_rep	three_prime_UTR	28667870	28668105	.	+	.	Parent=Os01t0694000-01
Chr01	irgsp1_rep	mRNA	28669548	28672188	.	-	.	ID=Os01t0694050-00;Name=Os01t0694050-00;Locus_id=Os01g0694050;Note=Hypothetical gene.;Transcript_evidence=EU957514 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0694050-00;KEGG=Os01t0694050-00
Chr01	irgsp1_rep	five_prime_UTR	28671900	28672188	.	-	.	Parent=Os01t0694050-00
Chr01	irgsp1_rep	five_prime_UTR	28670230	28671835	.	-	.	Parent=Os01t0694050-00
Chr01	irgsp1_rep	five_prime_UTR	28670109	28670159	.	-	.	Parent=Os01t0694050-00
Chr01	irgsp1_rep	CDS	28669683	28670108	.	-	0	Parent=Os01t0694050-00
Chr01	irgsp1_rep	three_prime_UTR	28669548	28669682	.	-	.	Parent=Os01t0694050-00
Chr01	irgsp1_rep	mRNA	28669652	28673566	.	+	.	ID=Os01t0694100-01;Name=Os01t0694100-01;Locus_id=Os01g0694100;Oryzabase Gene Symbol Synonym(s)=LRR-RLK;Oryzabase Gene Name Synonym(s)=leucine-rich repeat receptor-like kinase;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=AK072480 (DDBJ%2C Best hit);ORF_evidence=B9EYY3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J023126F05;Oryzabase=21644;TENOR=Os01t0694100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	28669652	28669698	.	+	.	Parent=Os01t0694100-01
Chr01	irgsp1_rep	CDS	28669699	28670850	.	+	0	Parent=Os01t0694100-01
Chr01	irgsp1_rep	three_prime_UTR	28670851	28672583	.	+	.	Parent=Os01t0694100-01
Chr01	irgsp1_rep	three_prime_UTR	28672672	28673566	.	+	.	Parent=Os01t0694100-01
Chr01	irgsp1_rep	mRNA	28675518	28680153	.	-	.	ID=Os01t0694200-01;Name=Os01t0694200-01;Locus_id=Os01g0694200;Note=Conserved hypothetical protein.;Transcript_evidence=AK066673 (DDBJ%2C Best hit);ORF_evidence=B8A809 (UniProt);NIAS_FLcDNA=J013073O14;Expression=AK066673;TENOR=Os01t0694200-01;KEGG=Os01t0694200-01
Chr01	irgsp1_rep	five_prime_UTR	28680061	28680153	.	-	.	Parent=Os01t0694200-01
Chr01	irgsp1_rep	CDS	28679238	28680060	.	-	0	Parent=Os01t0694200-01
Chr01	irgsp1_rep	CDS	28677352	28677669	.	-	2	Parent=Os01t0694200-01
Chr01	irgsp1_rep	CDS	28677138	28677269	.	-	2	Parent=Os01t0694200-01
Chr01	irgsp1_rep	CDS	28676579	28676659	.	-	2	Parent=Os01t0694200-01
Chr01	irgsp1_rep	CDS	28676439	28676467	.	-	2	Parent=Os01t0694200-01
Chr01	irgsp1_rep	three_prime_UTR	28676413	28676438	.	-	.	Parent=Os01t0694200-01
Chr01	irgsp1_rep	three_prime_UTR	28676253	28676320	.	-	.	Parent=Os01t0694200-01
Chr01	irgsp1_rep	three_prime_UTR	28675518	28676158	.	-	.	Parent=Os01t0694200-01
Chr01	irgsp1_rep	mRNA	28683874	28686338	.	-	.	ID=Os01t0694300-01;Name=Os01t0694300-01;Locus_id=Os01g0694300;Note=Similar to T17H3.9.;Transcript_evidence=AK063899 (DDBJ%2C Best hit);ORF_evidence=Q9SXC5 (UniProt);InterPro=Symplekin tight junction protein C-terminal (IPR022075);NIAS_FLcDNA=001-122-H03;Expression=AK063899;TENOR=Os01t0694300-01;KEGG=Os01t0694300-01
Chr01	irgsp1_rep	five_prime_UTR	28686338	28686338	.	-	.	Parent=Os01t0694300-01
Chr01	irgsp1_rep	CDS	28686266	28686337	.	-	0	Parent=Os01t0694300-01
Chr01	irgsp1_rep	CDS	28685964	28686008	.	-	0	Parent=Os01t0694300-01
Chr01	irgsp1_rep	CDS	28685285	28685368	.	-	0	Parent=Os01t0694300-01
Chr01	irgsp1_rep	CDS	28685070	28685173	.	-	0	Parent=Os01t0694300-01
Chr01	irgsp1_rep	CDS	28684524	28684644	.	-	1	Parent=Os01t0694300-01
Chr01	irgsp1_rep	three_prime_UTR	28683874	28684523	.	-	.	Parent=Os01t0694300-01
Chr01	irgsp1_rep	mRNA	28697443	28698627	.	-	.	ID=Os01t0694400-00;Name=Os01t0694400-00;Locus_id=Os01g0694400;Note=Conserved hypothetical protein.;Transcript_evidence=AK334091 (DDBJ);ORF_evidence=NP_001172516.1 (RefSeq);TENOR=Os01t0694400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	28698616	28698627	.	-	.	Parent=Os01t0694400-00
Chr01	irgsp1_rep	CDS	28698497	28698615	.	-	0	Parent=Os01t0694400-00
Chr01	irgsp1_rep	CDS	28697466	28697661	.	-	1	Parent=Os01t0694400-00
Chr01	irgsp1_rep	three_prime_UTR	28697443	28697465	.	-	.	Parent=Os01t0694400-00
Chr01	irgsp1_rep	mRNA	28708990	28710370	.	-	.	ID=Os01t0694500-01;Name=Os01t0694500-01;Locus_id=Os01g0694500;Note=Hypothetical protein.;Transcript_evidence=AK108063 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-138-B04;TENOR=Os01t0694500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	28709321	28710370	.	-	.	Parent=Os01t0694500-01
Chr01	irgsp1_rep	CDS	28709069	28709320	.	-	0	Parent=Os01t0694500-01
Chr01	irgsp1_rep	three_prime_UTR	28708990	28709068	.	-	.	Parent=Os01t0694500-01
Chr01	irgsp1_rep	mRNA	28726589	28727227	.	-	.	ID=Os01t0694800-01;Name=Os01t0694800-01;Locus_id=Os01g0694800;Note=Conserved hypothetical protein.;Transcript_evidence=AK109275 (DDBJ%2C Best hit);ORF_evidence=Q651H8 (UniProt);NIAS_FLcDNA=002-188-A11;TENOR=Os01t0694800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	28726766	28727227	.	-	0	Parent=Os01t0694800-01
Chr01	irgsp1_rep	three_prime_UTR	28726589	28726765	.	-	.	Parent=Os01t0694800-01
Chr01	irgsp1_rep	mRNA	28729121	28735042	.	+	.	ID=Os01t0694900-01;Name=Os01t0694900-01;Locus_id=Os01g0694900;Note=Epsin-like%2C N-terminal domain containing protein.;Transcript_evidence=AK063321 (DDBJ%2C Best hit);ORF_evidence=NP_565267.1 (RefSeq);GO=Biological Process: clathrin coat assembly (GO:0048268),Cellular Component: clathrin coat (GO:0030118),Molecular Function: phospholipid binding (GO:0005543),Molecular Function: 1-phosphatidylinositol binding (GO:0005545),Molecular Function: clathrin binding (GO:0030276);InterPro=ENTH/VHS (IPR008942),ANTH (IPR011417),Epsin-like%2C N-terminal (IPR013809),Clathrin adaptor%2C phosphoinositide-binding%2C GAT-like (IPR014712);NIAS_FLcDNA=001-113-H02;Expression=AK063321;TENOR=Os01t0694900-01;KEGG=Os01t0694900-01
Chr01	irgsp1_rep	five_prime_UTR	28729121	28729266	.	+	.	Parent=Os01t0694900-01
Chr01	irgsp1_rep	CDS	28729267	28729356	.	+	0	Parent=Os01t0694900-01
Chr01	irgsp1_rep	CDS	28729537	28729606	.	+	0	Parent=Os01t0694900-01
Chr01	irgsp1_rep	CDS	28729805	28729902	.	+	2	Parent=Os01t0694900-01
Chr01	irgsp1_rep	CDS	28730772	28730910	.	+	0	Parent=Os01t0694900-01
Chr01	irgsp1_rep	CDS	28730986	28731113	.	+	2	Parent=Os01t0694900-01
Chr01	irgsp1_rep	CDS	28731243	28731335	.	+	0	Parent=Os01t0694900-01
Chr01	irgsp1_rep	CDS	28731450	28731500	.	+	0	Parent=Os01t0694900-01
Chr01	irgsp1_rep	CDS	28732148	28732213	.	+	0	Parent=Os01t0694900-01
Chr01	irgsp1_rep	CDS	28732311	28732376	.	+	0	Parent=Os01t0694900-01
Chr01	irgsp1_rep	CDS	28732467	28732545	.	+	0	Parent=Os01t0694900-01
Chr01	irgsp1_rep	CDS	28732641	28732720	.	+	2	Parent=Os01t0694900-01
Chr01	irgsp1_rep	CDS	28732991	28733170	.	+	0	Parent=Os01t0694900-01
Chr01	irgsp1_rep	CDS	28733245	28733320	.	+	0	Parent=Os01t0694900-01
Chr01	irgsp1_rep	CDS	28733403	28733530	.	+	2	Parent=Os01t0694900-01
Chr01	irgsp1_rep	CDS	28734312	28734674	.	+	0	Parent=Os01t0694900-01
Chr01	irgsp1_rep	three_prime_UTR	28734675	28735042	.	+	.	Parent=Os01t0694900-01
Chr01	irgsp1_rep	mRNA	28739988	28744712	.	+	.	ID=Os01t0695100-01;Name=Os01t0695100-01;Locus_id=Os01g0695100;Oryzabase Gene Symbol Synonym(s)=OsPEAMT1;Oryzabase Gene Name Synonym(s)=Phosphoethanolamine N-Methyltransferase 1;Note=Similar to Phosphoethanolamine N-methyltransferase.;Transcript_evidence=AK102037 (DDBJ%2C Best hit);ORF_evidence=Q6QA26 (UniProt);NIAS_FLcDNA=J033081D06;Oryzabase=19062;Expression=AK102037;TENOR=Os01t0695100-01;KEGG=Os01t0695100-01
Chr01	irgsp1_rep	five_prime_UTR	28739988	28740235	.	+	.	Parent=Os01t0695100-01
Chr01	irgsp1_rep	CDS	28740236	28740266	.	+	0	Parent=Os01t0695100-01
Chr01	irgsp1_rep	CDS	28740486	28740613	.	+	2	Parent=Os01t0695100-01
Chr01	irgsp1_rep	CDS	28741817	28741960	.	+	0	Parent=Os01t0695100-01
Chr01	irgsp1_rep	three_prime_UTR	28741961	28742918	.	+	.	Parent=Os01t0695100-01
Chr01	irgsp1_rep	three_prime_UTR	28743003	28744712	.	+	.	Parent=Os01t0695100-01
Chr01	irgsp1_rep	mRNA	28741829	28744493	.	-	.	ID=Os01t0695150-00;Name=Os01t0695150-00;Locus_id=Os01g0695150;Note=Non-protein coding transcript.;Transcript_evidence=tplb0034h01 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os01t0695150-00
Chr01	irgsp1_rep	exon	28744350	28744493	.	-	.	Parent=Os01t0695150-00
Chr01	irgsp1_rep	exon	28744034	28744150	.	-	.	Parent=Os01t0695150-00
Chr01	irgsp1_rep	exon	28743800	28743934	.	-	.	Parent=Os01t0695150-00
Chr01	irgsp1_rep	exon	28743240	28743522	.	-	.	Parent=Os01t0695150-00
Chr01	irgsp1_rep	exon	28743000	28743142	.	-	.	Parent=Os01t0695150-00
Chr01	irgsp1_rep	exon	28742806	28742915	.	-	.	Parent=Os01t0695150-00
Chr01	irgsp1_rep	exon	28742426	28742584	.	-	.	Parent=Os01t0695150-00
Chr01	irgsp1_rep	exon	28742115	28742222	.	-	.	Parent=Os01t0695150-00
Chr01	irgsp1_rep	exon	28741829	28741969	.	-	.	Parent=Os01t0695150-00
Chr01	irgsp1_rep	mRNA	28746556	28751345	.	+	.	ID=Os01t0695200-01;Name=Os01t0695200-01;Locus_id=Os01g0695200;Note=Protein of unknown function DUF266%2C plant family protein.;Transcript_evidence=AK064145 (DDBJ%2C Best hit);ORF_evidence=B8A814 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: acetylglucosaminyltransferase activity (GO:0008375);InterPro=Glycosyl transferase%2C family 14 (IPR003406);NIAS_FLcDNA=002-103-C04;Expression=AK064145;TENOR=Os01t0695200-01;KEGG=Os01t0695200-01
Chr01	irgsp1_rep	five_prime_UTR	28746556	28746647	.	+	.	Parent=Os01t0695200-01
Chr01	irgsp1_rep	CDS	28746648	28746685	.	+	0	Parent=Os01t0695200-01
Chr01	irgsp1_rep	CDS	28746837	28746975	.	+	1	Parent=Os01t0695200-01
Chr01	irgsp1_rep	CDS	28747079	28747195	.	+	0	Parent=Os01t0695200-01
Chr01	irgsp1_rep	CDS	28747303	28747403	.	+	0	Parent=Os01t0695200-01
Chr01	irgsp1_rep	CDS	28747994	28748065	.	+	1	Parent=Os01t0695200-01
Chr01	irgsp1_rep	CDS	28748176	28748257	.	+	1	Parent=Os01t0695200-01
Chr01	irgsp1_rep	CDS	28748350	28748430	.	+	0	Parent=Os01t0695200-01
Chr01	irgsp1_rep	CDS	28749291	28749332	.	+	0	Parent=Os01t0695200-01
Chr01	irgsp1_rep	CDS	28749752	28749790	.	+	0	Parent=Os01t0695200-01
Chr01	irgsp1_rep	CDS	28750021	28750086	.	+	0	Parent=Os01t0695200-01
Chr01	irgsp1_rep	CDS	28750187	28750333	.	+	0	Parent=Os01t0695200-01
Chr01	irgsp1_rep	CDS	28750754	28750921	.	+	0	Parent=Os01t0695200-01
Chr01	irgsp1_rep	three_prime_UTR	28750922	28751345	.	+	.	Parent=Os01t0695200-01
Chr01	irgsp1_rep	mRNA	28752172	28755024	.	-	.	ID=Os01t0695300-01;Name=Os01t0695300-01;Locus_id=Os01g0695300;Note=Similar to Farnesyl pyrophosphate synthetase (FPP synthetase) (FPS) (Farnesyl diphosphate synthetase) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1)%3B Geranyltranstransferase (EC 2.5.1.10)].;Transcript_evidence=AK099451 (DDBJ%2C Best hit);ORF_evidence=B6TAB8 (UniProt);GO=Biological Process: isoprenoid biosynthetic process (GO:0008299);InterPro=Polyprenyl synthetase (IPR000092),Terpenoid synthase (IPR008949);NIAS_FLcDNA=J013022H18;Expression=AK099451;TENOR=Os01t0695300-01;KEGG=Os01t0695300-01 (EC:2.5.1.1%2C EC:2.5.1.10)
Chr01	irgsp1_rep	CDS	28755000	28755024	.	-	0	Parent=Os01t0695300-01
Chr01	irgsp1_rep	CDS	28754771	28754892	.	-	2	Parent=Os01t0695300-01
Chr01	irgsp1_rep	CDS	28754587	28754673	.	-	0	Parent=Os01t0695300-01
Chr01	irgsp1_rep	CDS	28754129	28754245	.	-	0	Parent=Os01t0695300-01
Chr01	irgsp1_rep	CDS	28753960	28754048	.	-	0	Parent=Os01t0695300-01
Chr01	irgsp1_rep	CDS	28753772	28753823	.	-	1	Parent=Os01t0695300-01
Chr01	irgsp1_rep	CDS	28753266	28753361	.	-	0	Parent=Os01t0695300-01
Chr01	irgsp1_rep	CDS	28753116	28753160	.	-	0	Parent=Os01t0695300-01
Chr01	irgsp1_rep	CDS	28752938	28753027	.	-	0	Parent=Os01t0695300-01
Chr01	irgsp1_rep	CDS	28752786	28752857	.	-	0	Parent=Os01t0695300-01
Chr01	irgsp1_rep	CDS	28752324	28752452	.	-	0	Parent=Os01t0695300-01
Chr01	irgsp1_rep	three_prime_UTR	28752172	28752323	.	-	.	Parent=Os01t0695300-01
Chr01	irgsp1_rep	mRNA	28756464	28759291	.	-	.	ID=Os01t0695600-00;Name=Os01t0695600-00;Locus_id=Os01g0695600;Note=Pyridoxal phosphate-dependent enzyme%2C beta subunit domain containing protein.;Transcript_evidence=CT834796 (DDBJ%2C Best hit);ORF_evidence=Q5N9P5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent enzyme%2C beta subunit (IPR001926);TENOR=Os01t0695600-00;KEGG=Os01t0695600-00
Chr01	irgsp1_rep	five_prime_UTR	28759244	28759291	.	-	.	Parent=Os01t0695600-00
Chr01	irgsp1_rep	CDS	28758917	28759243	.	-	0	Parent=Os01t0695600-00
Chr01	irgsp1_rep	CDS	28758776	28758818	.	-	0	Parent=Os01t0695600-00
Chr01	irgsp1_rep	CDS	28757761	28757890	.	-	2	Parent=Os01t0695600-00
Chr01	irgsp1_rep	CDS	28757185	28757364	.	-	1	Parent=Os01t0695600-00
Chr01	irgsp1_rep	CDS	28756568	28756796	.	-	1	Parent=Os01t0695600-00
Chr01	irgsp1_rep	three_prime_UTR	28756464	28756567	.	-	.	Parent=Os01t0695600-00
Chr01	irgsp1_rep	mRNA	28769003	28774443	.	-	.	ID=Os01t0695625-00;Name=Os01t0695625-00;Locus_id=Os01g0695625;Note=Hypothetical protein.;Transcript_evidence=BT035604 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0695625-00
Chr01	irgsp1_rep	five_prime_UTR	28774349	28774443	.	-	.	Parent=Os01t0695625-00
Chr01	irgsp1_rep	CDS	28774230	28774348	.	-	0	Parent=Os01t0695625-00
Chr01	irgsp1_rep	CDS	28769003	28769257	.	-	1	Parent=Os01t0695625-00
Chr01	irgsp1_rep	mRNA	28768976	28780102	.	+	.	ID=Os01t0695700-00;Name=Os01t0695700-00;Locus_id=Os01g0695700;CGSNL Gene Symbol=MDR9;CGSNL Gene Name=MULTIDRUG RESISTANCE 9;Oryzabase Gene Symbol Synonym(s)=OsABCB4%2C ABCB4%2C OsPGP4%2C OsMDR9%2C OsISC30;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCB subgroup member 4%2C P-Glycoprotein 4%2C multidrug resistance 9%2C Iron-sulfur cluster protein 30;Note=Similar to MDR-like ABC transporter.;Transcript_evidence=AB055077 (DDBJ);ORF_evidence=Q8GU73 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);Oryzabase=11924;TENOR=Os01t0695700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	28768976	28769242	.	+	0	Parent=Os01t0695700-00
Chr01	irgsp1_rep	CDS	28773552	28773606	.	+	0	Parent=Os01t0695700-00
Chr01	irgsp1_rep	CDS	28774264	28774439	.	+	2	Parent=Os01t0695700-00
Chr01	irgsp1_rep	CDS	28775042	28775263	.	+	0	Parent=Os01t0695700-00
Chr01	irgsp1_rep	CDS	28775373	28775611	.	+	0	Parent=Os01t0695700-00
Chr01	irgsp1_rep	CDS	28776242	28776767	.	+	1	Parent=Os01t0695700-00
Chr01	irgsp1_rep	CDS	28776858	28777131	.	+	0	Parent=Os01t0695700-00
Chr01	irgsp1_rep	CDS	28777238	28777877	.	+	2	Parent=Os01t0695700-00
Chr01	irgsp1_rep	CDS	28777963	28778191	.	+	1	Parent=Os01t0695700-00
Chr01	irgsp1_rep	CDS	28778425	28778691	.	+	0	Parent=Os01t0695700-00
Chr01	irgsp1_rep	CDS	28778774	28779037	.	+	0	Parent=Os01t0695700-00
Chr01	irgsp1_rep	CDS	28779443	28780087	.	+	0	Parent=Os01t0695700-00
Chr01	irgsp1_rep	three_prime_UTR	28780088	28780102	.	+	.	Parent=Os01t0695700-00
Chr01	irgsp1_rep	mRNA	28786544	28787701	.	-	.	ID=Os01t0695800-01;Name=Os01t0695800-01;Locus_id=Os01g0695800;CGSNL Gene Symbol=MDR7;CGSNL Gene Name=MULTIDRUG RESISTANCE 7;Oryzabase Gene Symbol Synonym(s)=MDR4%2C OsABCB5%2C ABCB5%2C OsPGP5%2C OsMDR7%2C OsISC28%2C MRP4%2C OsABCB11%2C ABCB11;Oryzabase Gene Name Synonym(s)=multidrug resistance protein 4%2C ABC transporter superfamily ABCB subgroup member 5%2C P-Glycoprotein 5%2C Iron-sulfur cluster protein 28;Note=Similar to MDR-like ABC transporter.;Transcript_evidence=AK108373 (DDBJ%2C Best hit);ORF_evidence=Q8GU72 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=002-142-D10;Oryzabase=9977;TENOR=Os01t0695800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	28787700	28787701	.	-	.	Parent=Os01t0695800-01
Chr01	irgsp1_rep	CDS	28787556	28787699	.	-	0	Parent=Os01t0695800-01
Chr01	irgsp1_rep	CDS	28786642	28787286	.	-	0	Parent=Os01t0695800-01
Chr01	irgsp1_rep	three_prime_UTR	28786544	28786641	.	-	.	Parent=Os01t0695800-01
Chr01	irgsp1_rep	mRNA	28796526	28797649	.	+	.	ID=Os01t0695900-01;Name=Os01t0695900-01;Locus_id=Os01g0695900;Oryzabase Gene Symbol Synonym(s)=OsMyb4%2C OSMYB4%2C MYB4%2C OsEnS-11%2C OsGL1C%2C GL1C;Oryzabase Gene Name Synonym(s)=myb transcription factor 4%2C transcription factor MYB4%2C endosperm-specific gene 11%2C GLABRA1C%2C GLABRA 1C;Note=OSMYB4.;Transcript_evidence=AK108259 (DDBJ%2C Best hit);ORF_evidence=O23892 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=002-141-A12;Oryzabase=10247;Expression=AK108259;TENOR=Os01t0695900-01;KEGG=Os01t0695900-01
Chr01	irgsp1_rep	five_prime_UTR	28796526	28796566	.	+	.	Parent=Os01t0695900-01
Chr01	irgsp1_rep	CDS	28796567	28796853	.	+	0	Parent=Os01t0695900-01
Chr01	irgsp1_rep	CDS	28796947	28797487	.	+	1	Parent=Os01t0695900-01
Chr01	irgsp1_rep	three_prime_UTR	28797488	28797649	.	+	.	Parent=Os01t0695900-01
Chr01	irgsp1_rep	mRNA	28798880	28801271	.	+	.	ID=Os01t0696000-01;Name=Os01t0696000-01;Locus_id=Os01g0696000;Note=Similar to Calcium-activated outward-rectifying potassium channel 1 (AtKCO1).;Transcript_evidence=AK110917 (DDBJ%2C Best hit);ORF_evidence=A2ZWV2 (UniProt);NIAS_FLcDNA=002-173-C09;Expression=AK110917;TENOR=Os01t0696000-01;KEGG=Os01t0696000-01
Chr01	irgsp1_rep	five_prime_UTR	28798880	28798910	.	+	.	Parent=Os01t0696000-01
Chr01	irgsp1_rep	CDS	28798911	28799115	.	+	0	Parent=Os01t0696000-01
Chr01	irgsp1_rep	CDS	28799397	28799596	.	+	2	Parent=Os01t0696000-01
Chr01	irgsp1_rep	CDS	28800010	28800045	.	+	0	Parent=Os01t0696000-01
Chr01	irgsp1_rep	three_prime_UTR	28800046	28800418	.	+	.	Parent=Os01t0696000-01
Chr01	irgsp1_rep	three_prime_UTR	28800539	28801271	.	+	.	Parent=Os01t0696000-01
Chr01	irgsp1_rep	mRNA	28798884	28803859	.	+	.	ID=Os01t0696000-02;Name=Os01t0696000-02;Locus_id=Os01g0696000;Note=Conserved hypothetical protein.;Transcript_evidence=AK066735 (DDBJ%2C Best hit);ORF_evidence=A2ZWV2 (UniProt);NIAS_FLcDNA=J013088G11;Expression=AK066735;TENOR=Os01t0696000-02;KEGG=Os01t0696000-02
Chr01	irgsp1_rep	five_prime_UTR	28798884	28798910	.	+	.	Parent=Os01t0696000-02
Chr01	irgsp1_rep	CDS	28798911	28799115	.	+	0	Parent=Os01t0696000-02
Chr01	irgsp1_rep	CDS	28799397	28799596	.	+	2	Parent=Os01t0696000-02
Chr01	irgsp1_rep	CDS	28799961	28800418	.	+	0	Parent=Os01t0696000-02
Chr01	irgsp1_rep	CDS	28800539	28800590	.	+	1	Parent=Os01t0696000-02
Chr01	irgsp1_rep	three_prime_UTR	28800591	28800658	.	+	.	Parent=Os01t0696000-02
Chr01	irgsp1_rep	three_prime_UTR	28801576	28802910	.	+	.	Parent=Os01t0696000-02
Chr01	irgsp1_rep	three_prime_UTR	28803165	28803859	.	+	.	Parent=Os01t0696000-02
Chr01	irgsp1_rep	mRNA	28801026	28802680	.	-	.	ID=Os01t0696100-00;Name=Os01t0696100-00;Locus_id=Os01g0696100;CGSNL Gene Symbol=ROK;Oryzabase Gene Symbol Synonym(s)=OsROK;Oryzabase Gene Name Synonym(s)=outward K+-rectifying channel%2C K+ leakage channel;Note=Similar to outward rectifying potassium channel.;Transcript_evidence=AB248822 (DDBJ%2C Best hit);ORF_evidence=XP_002302141.1 (RefSeq);GO=Biological Process: potassium ion transmembrane transport (GO:0071805),Cellular Component: membrane (GO:0016020),Molecular Function: potassium channel activity (GO:0005267);InterPro=Potassium channel%2C two pore (IPR003280),Ion transport 2 (IPR013099);Oryzabase=23526;TENOR=Os01t0696100-00;KEGG=Os01t0696100-00
Chr01	irgsp1_rep	CDS	28801608	28802680	.	-	0	Parent=Os01t0696100-00
Chr01	irgsp1_rep	CDS	28801026	28801170	.	-	1	Parent=Os01t0696100-00
Chr01	irgsp1_rep	mRNA	28823442	28824184	.	-	.	ID=Os01t0696500-01;Name=Os01t0696500-01;Locus_id=Os01g0696500;Note=Conserved hypothetical protein.;Transcript_evidence=AK063219 (DDBJ%2C Best hit);ORF_evidence=B8A819 (UniProt);NIAS_FLcDNA=001-112-E03;Expression=AK063219;TENOR=Os01t0696500-01;KEGG=Os01t0696500-01
Chr01	irgsp1_rep	five_prime_UTR	28823899	28824184	.	-	.	Parent=Os01t0696500-01
Chr01	irgsp1_rep	CDS	28823750	28823898	.	-	0	Parent=Os01t0696500-01
Chr01	irgsp1_rep	CDS	28823616	28823631	.	-	1	Parent=Os01t0696500-01
Chr01	irgsp1_rep	three_prime_UTR	28823442	28823615	.	-	.	Parent=Os01t0696500-01
Chr01	irgsp1_rep	mRNA	28825692	28826250	.	+	.	ID=Os01t0696600-01;Name=Os01t0696600-01;Locus_id=Os01g0696600;CGSNL Gene Symbol=MDR8;CGSNL Gene Name=MULTIDRUG RESISTANCE 8;Oryzabase Gene Symbol Synonym(s)=OsABCB6%2C ABCB6%2C OsPGP6%2C OsMDR8%2C OsISC31;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCB subgroup member 6%2C P-Glycoprotein 6%2C multidrug resistance 8%2C Iron-sulfur cluster protein 31;Note=Similar to MDR-like ABC transporter.;Transcript_evidence=AK111341 (DDBJ%2C Best hit);ORF_evidence=Q7FMW3 (UniProt);NIAS_FLcDNA=002-181-F08;Oryzabase=11925;Expression=AK111341;TENOR=Os01t0696600-01;KEGG=Os01t0696600-01
Chr01	irgsp1_rep	five_prime_UTR	28825692	28825777	.	+	.	Parent=Os01t0696600-01
Chr01	irgsp1_rep	CDS	28825778	28826116	.	+	0	Parent=Os01t0696600-01
Chr01	irgsp1_rep	three_prime_UTR	28826117	28826250	.	+	.	Parent=Os01t0696600-01
Chr01	irgsp1_rep	mRNA	28825757	28828085	.	-	.	ID=Os01t0696701-00;Name=Os01t0696701-00;Locus_id=Os01g0696701;Note=Hypothetical protein.;Transcript_evidence=AK359530 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0696701-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	28827897	28828085	.	-	.	Parent=Os01t0696701-00
Chr01	irgsp1_rep	five_prime_UTR	28827305	28827360	.	-	.	Parent=Os01t0696701-00
Chr01	irgsp1_rep	five_prime_UTR	28826423	28826621	.	-	.	Parent=Os01t0696701-00
Chr01	irgsp1_rep	five_prime_UTR	28826014	28826127	.	-	.	Parent=Os01t0696701-00
Chr01	irgsp1_rep	CDS	28825757	28826013	.	-	0	Parent=Os01t0696701-00
Chr01	irgsp1_rep	mRNA	28835243	28836884	.	+	.	ID=Os01t0696800-01;Name=Os01t0696800-01;Locus_id=Os01g0696800;Note=Peptidase A1 domain containing protein.;Transcript_evidence=AK061435 (DDBJ%2C Best hit);ORF_evidence=A2ZWV5 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=006-307-A09;Expression=AK061435;TENOR=Os01t0696800-01;KEGG=Os01t0696800-01
Chr01	irgsp1_rep	five_prime_UTR	28835243	28835294	.	+	.	Parent=Os01t0696800-01
Chr01	irgsp1_rep	CDS	28835295	28836656	.	+	0	Parent=Os01t0696800-01
Chr01	irgsp1_rep	three_prime_UTR	28836657	28836884	.	+	.	Parent=Os01t0696800-01
Chr01	irgsp1_rep	mRNA	28835283	28836853	.	+	.	ID=Os01t0696800-02;Name=Os01t0696800-02;Locus_id=Os01g0696800;Note=Peptidase aspartic%2C catalytic domain containing protein.;Transcript_evidence=AK060038 (DDBJ%2C Best hit);ORF_evidence=A2ZWV5 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=006-304-B02;TENOR=Os01t0696800-02;KEGG=Os01t0696800-02
Chr01	irgsp1_rep	five_prime_UTR	28835283	28835294	.	+	.	Parent=Os01t0696800-02
Chr01	irgsp1_rep	CDS	28835295	28835339	.	+	0	Parent=Os01t0696800-02
Chr01	irgsp1_rep	CDS	28835697	28836656	.	+	0	Parent=Os01t0696800-02
Chr01	irgsp1_rep	three_prime_UTR	28836657	28836853	.	+	.	Parent=Os01t0696800-02
Chr01	irgsp1_rep	mRNA	28847995	28849719	.	-	.	ID=Os01t0697100-01;Name=Os01t0697100-01;Locus_id=Os01g0697100;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK071819 (DDBJ%2C Best hit);ORF_evidence=NP_001149462.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Biological Process: methylation (GO:0032259),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=DNA methylase%2C N-6 adenine-specific%2C conserved site (IPR002052),UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J023114N14;Expression=AK071819;TENOR=Os01t0697100-01;KEGG=Os01t0697100-01
Chr01	irgsp1_rep	five_prime_UTR	28849660	28849719	.	-	.	Parent=Os01t0697100-01
Chr01	irgsp1_rep	CDS	28848205	28849659	.	-	0	Parent=Os01t0697100-01
Chr01	irgsp1_rep	three_prime_UTR	28847995	28848204	.	-	.	Parent=Os01t0697100-01
Chr01	irgsp1_rep	mRNA	28854747	28855282	.	-	.	ID=Os01t0697250-00;Name=Os01t0697250-00;Locus_id=Os01g0697250;Note=Similar to OSIGBa0132O24.2 protein.;Transcript_evidence=EU951090 (DDBJ);ORF_evidence=Q01MB5 (UniProt);TENOR=Os01t0697250-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	28855178	28855282	.	-	0	Parent=Os01t0697250-00
Chr01	irgsp1_rep	CDS	28854749	28855093	.	-	0	Parent=Os01t0697250-00
Chr01	irgsp1_rep	three_prime_UTR	28854747	28854748	.	-	.	Parent=Os01t0697250-00
Chr01	irgsp1_rep	mRNA	28870424	28872556	.	-	.	ID=Os01t0697400-00;Name=Os01t0697400-00;Locus_id=Os01g0697400;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0004h08 (Wheat FLcDNA);ORF_evidence=B9EZ00 (UniProt);TENOR=Os01t0697400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	28872556	28872556	.	-	.	Parent=Os01t0697400-00
Chr01	irgsp1_rep	CDS	28872319	28872555	.	-	0	Parent=Os01t0697400-00
Chr01	irgsp1_rep	CDS	28870424	28870747	.	-	0	Parent=Os01t0697400-00
Chr01	irgsp1_rep	mRNA	28874539	28875033	.	-	.	ID=Os01t0697700-00;Name=Os01t0697700-00;Locus_id=Os01g0697700;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5N8K2 (UniProt);TENOR=Os01t0697700-00;KEGG=Os01t0697700-00
Chr01	irgsp1_rep	CDS	28874539	28875033	.	-	0	Parent=Os01t0697700-00
Chr01	irgsp1_rep	mRNA	28881515	28882954	.	-	.	ID=Os01t0698000-02;Name=Os01t0698000-02;Locus_id=Os01g0698000;Note=Conserved hypothetical protein.;Transcript_evidence=AK067215 (DDBJ%2C Best hit),AK104701 (DDBJ%2C Best hit);ORF_evidence=B8A823 (UniProt);NIAS_FLcDNA=J013098I22,001-037-C09;Expression=AK067215;TENOR=Os01t0698000-02;KEGG=Os01t0698000-02
Chr01	irgsp1_rep	five_prime_UTR	28882860	28882954	.	-	.	Parent=Os01t0698000-02
Chr01	irgsp1_rep	CDS	28881816	28882859	.	-	0	Parent=Os01t0698000-02
Chr01	irgsp1_rep	three_prime_UTR	28881515	28881815	.	-	.	Parent=Os01t0698000-02
Chr01	irgsp1_rep	mRNA	28885452	28890777	.	+	.	ID=Os01t0698100-01;Name=Os01t0698100-01;Locus_id=Os01g0698100;Note=SWAP/Surp domain containing protein.;Transcript_evidence=AK100466 (DDBJ%2C Best hit);ORF_evidence=A2WU48 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Molecular Function: RNA binding (GO:0003723);InterPro=SWAP/Surp (IPR000061),Splicing factor%2C suppressor of white apricot (IPR019147);NIAS_FLcDNA=J023092E18;Expression=AK100466;TENOR=Os01t0698100-01;KEGG=Os01t0698100-01
Chr01	irgsp1_rep	five_prime_UTR	28885452	28885553	.	+	.	Parent=Os01t0698100-01
Chr01	irgsp1_rep	CDS	28885554	28885863	.	+	0	Parent=Os01t0698100-01
Chr01	irgsp1_rep	CDS	28886932	28887074	.	+	2	Parent=Os01t0698100-01
Chr01	irgsp1_rep	CDS	28887496	28888275	.	+	0	Parent=Os01t0698100-01
Chr01	irgsp1_rep	CDS	28889311	28890711	.	+	0	Parent=Os01t0698100-01
Chr01	irgsp1_rep	three_prime_UTR	28890712	28890777	.	+	.	Parent=Os01t0698100-01
Chr01	irgsp1_rep	mRNA	28885481	28886281	.	+	.	ID=Os01t0698100-02;Name=Os01t0698100-02;Locus_id=Os01g0698100;Note=Similar to SWAP (Suppressor-of-White-APricot)/surp domain-containing protein.;Transcript_evidence=AK106727 (DDBJ%2C Best hit);ORF_evidence=Q5N8J9 (UniProt);InterPro=Splicing factor%2C suppressor of white apricot (IPR019147);NIAS_FLcDNA=002-114-H06;Expression=AK106727;TENOR=Os01t0698100-02;KEGG=Os01t0698100-02
Chr01	irgsp1_rep	five_prime_UTR	28885481	28885553	.	+	.	Parent=Os01t0698100-02
Chr01	irgsp1_rep	CDS	28885554	28885997	.	+	0	Parent=Os01t0698100-02
Chr01	irgsp1_rep	three_prime_UTR	28885998	28886281	.	+	.	Parent=Os01t0698100-02
Chr01	irgsp1_rep	mRNA	28890176	28890710	.	-	.	ID=Os01t0698150-00;Name=Os01t0698150-00;Locus_id=Os01g0698150;Note=Non-protein coding transcript.;Transcript_evidence=EU941561 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0698150-00
Chr01	irgsp1_rep	exon	28890559	28890710	.	-	.	Parent=Os01t0698150-00
Chr01	irgsp1_rep	exon	28890176	28890365	.	-	.	Parent=Os01t0698150-00
Chr01	irgsp1_rep	mRNA	28891193	28892278	.	-	.	ID=Os01t0698200-00;Name=Os01t0698200-00;Locus_id=Os01g0698200;Oryzabase Gene Symbol Synonym(s)=OsSTRL1%2C STRL1;Oryzabase Gene Name Synonym(s)=STR-like 1;Note=Similar to strictosidine synthase 1.;Transcript_evidence=EU971315 (DDBJ);ORF_evidence=NP_001150945.1 (RefSeq);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: strictosidine synthase activity (GO:0016844);InterPro=Six-bladed beta-propeller%2C TolB-like (IPR011042),Strictosidine synthase%2C conserved region (IPR018119);Oryzabase=21788;TENOR=Os01t0698200-00;KEGG=Os01t0698200-00
Chr01	irgsp1_rep	CDS	28891406	28892278	.	-	0	Parent=Os01t0698200-00
Chr01	irgsp1_rep	three_prime_UTR	28891193	28891405	.	-	.	Parent=Os01t0698200-00
Chr01	irgsp1_rep	mRNA	28892894	28897236	.	+	.	ID=Os01t0698300-01;Name=Os01t0698300-01;Locus_id=Os01g0698300;Note=Zinc finger%2C BED-type predicted domain containing protein.;Transcript_evidence=AK100582 (DDBJ%2C Best hit);ORF_evidence=B6U4H6 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Zinc finger%2C BED-type predicted (IPR003656),HAT dimerisation (IPR008906),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J023105O09;Expression=AK100582;TENOR=Os01t0698300-01;KEGG=Os01t0698300-01
Chr01	irgsp1_rep	five_prime_UTR	28892894	28893019	.	+	.	Parent=Os01t0698300-01
Chr01	irgsp1_rep	five_prime_UTR	28893686	28893714	.	+	.	Parent=Os01t0698300-01
Chr01	irgsp1_rep	CDS	28893715	28895749	.	+	0	Parent=Os01t0698300-01
Chr01	irgsp1_rep	CDS	28895837	28895907	.	+	2	Parent=Os01t0698300-01
Chr01	irgsp1_rep	three_prime_UTR	28896901	28897236	.	+	.	Parent=Os01t0698300-01
Chr01	irgsp1_rep	mRNA	28894263	28897172	.	+	.	ID=Os01t0698300-02;Name=Os01t0698300-02;Locus_id=Os01g0698300;Note=Similar to transposon protein.;Transcript_evidence=AK058744 (DDBJ%2C Best hit);ORF_evidence=B6U4H6 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein dimerization activity (GO:0046983);InterPro=HAT dimerisation (IPR008906),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=001-019-G12;Expression=AK058744;TENOR=Os01t0698300-02;KEGG=Os01t0698300-02
Chr01	irgsp1_rep	five_prime_UTR	28894263	28894263	.	+	.	Parent=Os01t0698300-02
Chr01	irgsp1_rep	CDS	28894264	28895749	.	+	0	Parent=Os01t0698300-02
Chr01	irgsp1_rep	CDS	28895837	28895907	.	+	2	Parent=Os01t0698300-02
Chr01	irgsp1_rep	three_prime_UTR	28896901	28897172	.	+	.	Parent=Os01t0698300-02
Chr01	irgsp1_rep	mRNA	28900223	28903951	.	-	.	ID=Os01t0698500-01;Name=Os01t0698500-01;Locus_id=Os01g0698500;Note=Non-protein coding transcript.;Transcript_evidence=AK059674 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-031-G04;TENOR=Os01t0698500-01
Chr01	irgsp1_rep	exon	28903781	28903951	.	-	.	Parent=Os01t0698500-01
Chr01	irgsp1_rep	exon	28900223	28900488	.	-	.	Parent=Os01t0698500-01
Chr01	irgsp1_rep	mRNA	28910215	28911081	.	-	.	ID=Os01t0698800-01;Name=Os01t0698800-01;Locus_id=Os01g0698800;Note=Conserved hypothetical protein.;Transcript_evidence=AK243388 (DDBJ%2C Best hit);ORF_evidence=NP_001043975.2 (RefSeq);NIAS_FLcDNA=J100063J23;Oryzabase=22570;TENOR=Os01t0698800-01;KEGG=Os01t0698800-01
Chr01	irgsp1_rep	five_prime_UTR	28910999	28911081	.	-	.	Parent=Os01t0698800-01
Chr01	irgsp1_rep	CDS	28910363	28910998	.	-	0	Parent=Os01t0698800-01
Chr01	irgsp1_rep	three_prime_UTR	28910215	28910362	.	-	.	Parent=Os01t0698800-01
Chr01	irgsp1_rep	mRNA	28914457	28915902	.	+	.	ID=Os01t0698900-00;Name=Os01t0698900-00;Locus_id=Os01g0698900;Note=Similar to nascent polypeptide-associated complex alpha subunit-like protein.;Transcript_evidence=AK357744 (DDBJ);ORF_evidence=NP_001147705.1 (RefSeq);InterPro=Nascent polypeptide-associated complex NAC (IPR002715);TENOR=Os01t0698900-00;KEGG=Os01t0698900-00
Chr01	irgsp1_rep	CDS	28914457	28915003	.	+	0	Parent=Os01t0698900-00
Chr01	irgsp1_rep	CDS	28915215	28915348	.	+	2	Parent=Os01t0698900-00
Chr01	irgsp1_rep	CDS	28915435	28915902	.	+	0	Parent=Os01t0698900-00
Chr01	irgsp1_rep	mRNA	28921498	28923085	.	+	.	ID=Os01t0699100-01;Name=Os01t0699100-01;Locus_id=Os01g0699100;RAP-DB Gene Symbol Synonym(s)=OsMAPKKK63;RAP-DB Gene Name Synonym(s)=MAP kinase kinase kinase 63;Note=MAP kinase kinase kinase%2C Salt stress response%2C Seed dormancy control;Transcript_evidence=AK058518 (truncated),Inferred from literature;ORF_evidence=B8QUI7;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),Protein kinase domain (IPR000719),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=001-016-H04 (truncated);Manual Curation=June 8%2C 2020;Literature_PMID=30764706;TENOR=Os01t0699100-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=nucleus (GO:0005634), cytosol (GO:0005829)
Chr01	irgsp1_rep	five_prime_UTR	28921498	28921630	.	+	.	Parent=Os01t0699100-01
Chr01	irgsp1_rep	CDS	28921631	28923085	.	+	0	Parent=Os01t0699100-01
Chr01	irgsp1_rep	mRNA	28933836	28935191	.	+	.	ID=Os01t0699400-01;Name=Os01t0699400-01;Locus_id=Os01g0699400;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK107168 (DDBJ%2C Best hit);ORF_evidence=B8QUI9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=002-124-F11;TENOR=Os01t0699400-01
Chr01	irgsp1_rep	five_prime_UTR	28933836	28933953	.	+	.	Parent=Os01t0699400-01
Chr01	irgsp1_rep	CDS	28933954	28935191	.	+	0	Parent=Os01t0699400-01
Chr01	irgsp1_rep	mRNA	28939652	28940925	.	+	.	ID=Os01t0699450-00;Name=Os01t0699450-00;Locus_id=Os01g0699450;Note=Hypothetical protein.;Transcript_evidence=tplb0040o12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0699450-00
Chr01	irgsp1_rep	five_prime_UTR	28939652	28940319	.	+	.	Parent=Os01t0699450-00
Chr01	irgsp1_rep	CDS	28940320	28940925	.	+	0	Parent=Os01t0699450-00
Chr01	irgsp1_rep	mRNA	28939657	28941009	.	-	.	ID=Os01t0699500-01;Name=Os01t0699500-01;Locus_id=Os01g0699500;Oryzabase Gene Symbol Synonym(s)=MAP3K6;Oryzabase Gene Name Synonym(s)=MAPK KINASE KINASE6;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK071585 (DDBJ%2C Best hit);ORF_evidence=B8QUJ2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023099P18;Oryzabase=13478;TENOR=Os01t0699500-01
Chr01	irgsp1_rep	five_prime_UTR	28940928	28941009	.	-	.	Parent=Os01t0699500-01
Chr01	irgsp1_rep	CDS	28939657	28940927	.	-	0	Parent=Os01t0699500-01
Chr01	irgsp1_rep	mRNA	28946550	28948064	.	-	.	ID=Os01t0699600-01;Name=Os01t0699600-01;Locus_id=Os01g0699600;RAP-DB Gene Symbol Synonym(s)=MKKK62;RAP-DB Gene Name Synonym(s)=Mitogen-activated protein kinase kinase kinase 62;Oryzabase Gene Symbol Synonym(s)=OsNPK1-PK%2C NPK1-PK%2C OsMKKK62%2C MKKK62;Oryzabase Gene Name Synonym(s)=NPK1-related protein kinase;Note=Mitogen-activated protein kinase kinase kinase (MAPKKK)%2C Negative regulation of seed dormancy;Transcript_evidence=AK105196 (truncated),XM_015783536.2;ORF_evidence=XP_015639022.1;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),Protein kinase domain (IPR000719),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=001-107-F03 (truncated);Manual Curation=February 6%2C 2019;Literature_PMID=30671680;Oryzabase=12481;Expression=AK105196;TENOR=Os01t0699600-01;KEGG=Os01t0699600-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	28948026	28948064	.	-	.	Parent=Os01t0699600-01
Chr01	irgsp1_rep	CDS	28946565	28948025	.	-	0	Parent=Os01t0699600-01
Chr01	irgsp1_rep	three_prime_UTR	28946550	28946564	.	-	.	Parent=Os01t0699600-01
Chr01	irgsp1_rep	mRNA	28955683	28957013	.	+	.	ID=Os01t0699900-01;Name=Os01t0699900-01;Locus_id=Os01g0699900;Note=Similar to Plasma membrane associated protein-like.;Transcript_evidence=AK067766 (DDBJ%2C Best hit);ORF_evidence=NP_001152147.1 (RefSeq);InterPro=AWPM-19-like (IPR008390);NIAS_FLcDNA=J013120F13;Expression=AK067766;TENOR=Os01t0699900-01;KEGG=Os01t0699900-01
Chr01	irgsp1_rep	five_prime_UTR	28955683	28955809	.	+	.	Parent=Os01t0699900-01
Chr01	irgsp1_rep	CDS	28955810	28955936	.	+	0	Parent=Os01t0699900-01
Chr01	irgsp1_rep	CDS	28956120	28956339	.	+	2	Parent=Os01t0699900-01
Chr01	irgsp1_rep	CDS	28956430	28956475	.	+	1	Parent=Os01t0699900-01
Chr01	irgsp1_rep	CDS	28956581	28956658	.	+	0	Parent=Os01t0699900-01
Chr01	irgsp1_rep	three_prime_UTR	28956659	28957013	.	+	.	Parent=Os01t0699900-01
Chr01	irgsp1_rep	mRNA	28964966	28968109	.	-	.	ID=Os01t0699950-01;Name=Os01t0699950-01;Locus_id=Os01g0699950;Note=Hypothetical gene.;Transcript_evidence=AK288192 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090007C12;TENOR=Os01t0699950-01;KEGG=Os01t0699950-01
Chr01	irgsp1_rep	five_prime_UTR	28965233	28968109	.	-	.	Parent=Os01t0699950-01
Chr01	irgsp1_rep	CDS	28964966	28965232	.	-	0	Parent=Os01t0699950-01
Chr01	irgsp1_rep	mRNA	28970632	28974258	.	+	.	ID=Os01t0700000-01;Name=Os01t0700000-01;Locus_id=Os01g0700000;Note=Conserved hypothetical protein.;Transcript_evidence=AK060154 (DDBJ%2C Best hit),AK109495 (DDBJ%2C Best hit);ORF_evidence=A2WU59 (UniProt);NIAS_FLcDNA=006-310-F01,001-206-B10;Expression=AK060154;TENOR=Os01t0700000-01;KEGG=Os01t0700000-01
Chr01	irgsp1_rep	five_prime_UTR	28970632	28970748	.	+	.	Parent=Os01t0700000-01
Chr01	irgsp1_rep	CDS	28970749	28970947	.	+	0	Parent=Os01t0700000-01
Chr01	irgsp1_rep	CDS	28971239	28971720	.	+	2	Parent=Os01t0700000-01
Chr01	irgsp1_rep	CDS	28971818	28971919	.	+	0	Parent=Os01t0700000-01
Chr01	irgsp1_rep	three_prime_UTR	28971920	28971925	.	+	.	Parent=Os01t0700000-01
Chr01	irgsp1_rep	three_prime_UTR	28973962	28974258	.	+	.	Parent=Os01t0700000-01
Chr01	irgsp1_rep	mRNA	28970664	28974459	.	+	.	ID=Os01t0700000-02;Name=Os01t0700000-02;Locus_id=Os01g0700000;Note=Conserved hypothetical protein.;Transcript_evidence=AK100768 (DDBJ%2C Best hit);ORF_evidence=A2WU59 (UniProt);NIAS_FLcDNA=J023119M09;Expression=AK100768;TENOR=Os01t0700000-02;KEGG=Os01t0700000-02
Chr01	irgsp1_rep	five_prime_UTR	28970664	28970748	.	+	.	Parent=Os01t0700000-02
Chr01	irgsp1_rep	CDS	28970749	28970947	.	+	0	Parent=Os01t0700000-02
Chr01	irgsp1_rep	CDS	28971239	28971720	.	+	2	Parent=Os01t0700000-02
Chr01	irgsp1_rep	CDS	28971818	28971919	.	+	0	Parent=Os01t0700000-02
Chr01	irgsp1_rep	three_prime_UTR	28971920	28971925	.	+	.	Parent=Os01t0700000-02
Chr01	irgsp1_rep	three_prime_UTR	28973962	28974459	.	+	.	Parent=Os01t0700000-02
Chr01	irgsp1_rep	mRNA	28975565	28977344	.	+	.	ID=Os01t0700100-01;Name=Os01t0700100-01;Locus_id=Os01g0700100;CGSNL Gene Symbol=SWEET2B;CGSNL Gene Name=SWEET2B;Oryzabase Gene Symbol Synonym(s)=OsSWEET2b%2C SWEET2b;Note=MtN3 and saliva related transmembrane protein family protein.;Transcript_evidence=AK059965 (DDBJ%2C Best hit);ORF_evidence=Q5N8J1 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=RAG1-activating protein-1-related (IPR004316);NIAS_FLcDNA=006-211-F10;Oryzabase=9091;Expression=AK059965;TENOR=Os01t0700100-01;KEGG=Os01t0700100-01
Chr01	irgsp1_rep	five_prime_UTR	28975565	28975615	.	+	.	Parent=Os01t0700100-01
Chr01	irgsp1_rep	CDS	28975616	28975661	.	+	0	Parent=Os01t0700100-01
Chr01	irgsp1_rep	CDS	28975791	28975827	.	+	2	Parent=Os01t0700100-01
Chr01	irgsp1_rep	CDS	28975908	28976127	.	+	1	Parent=Os01t0700100-01
Chr01	irgsp1_rep	CDS	28976300	28976458	.	+	0	Parent=Os01t0700100-01
Chr01	irgsp1_rep	CDS	28976574	28976693	.	+	0	Parent=Os01t0700100-01
Chr01	irgsp1_rep	CDS	28976818	28976928	.	+	0	Parent=Os01t0700100-01
Chr01	irgsp1_rep	three_prime_UTR	28976929	28977344	.	+	.	Parent=Os01t0700100-01
Chr01	irgsp1_rep	mRNA	28978119	28983863	.	+	.	ID=Os01t0700200-01;Name=Os01t0700200-01;Locus_id=Os01g0700200;Oryzabase Gene Symbol Synonym(s)=OsSTA28;Note=Similar to Chromosome condensation regulator protein (Fragment).;Transcript_evidence=AK100961 (DDBJ%2C Best hit);ORF_evidence=NP_001154232.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C FYVE-type (IPR000306),Regulator of Chromosome condensation%2C RCC1 (IPR000408),Pleckstrin homology domain (IPR001849),Regulator of Chromosome condensation/beta-lactamase-inhibitor protein II (IPR009091),Zinc finger%2C FYVE/PHD-type (IPR011011),Pleckstrin homology-type (IPR011993),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Brevis radix-like domain (IPR013591),Zinc finger%2C FYVE-related (IPR017455);NIAS_FLcDNA=J023141C11;Oryzabase=19306;Expression=AK100961;TENOR=Os01t0700200-01;KEGG=Os01t0700200-01
Chr01	irgsp1_rep	five_prime_UTR	28978119	28978171	.	+	.	Parent=Os01t0700200-01
Chr01	irgsp1_rep	five_prime_UTR	28978321	28978354	.	+	.	Parent=Os01t0700200-01
Chr01	irgsp1_rep	five_prime_UTR	28978719	28978765	.	+	.	Parent=Os01t0700200-01
Chr01	irgsp1_rep	CDS	28978766	28978783	.	+	0	Parent=Os01t0700200-01
Chr01	irgsp1_rep	CDS	28978897	28978983	.	+	0	Parent=Os01t0700200-01
Chr01	irgsp1_rep	CDS	28979072	28979161	.	+	0	Parent=Os01t0700200-01
Chr01	irgsp1_rep	CDS	28979259	28979345	.	+	0	Parent=Os01t0700200-01
Chr01	irgsp1_rep	CDS	28979504	28979620	.	+	0	Parent=Os01t0700200-01
Chr01	irgsp1_rep	CDS	28980328	28982335	.	+	0	Parent=Os01t0700200-01
Chr01	irgsp1_rep	CDS	28982411	28982559	.	+	2	Parent=Os01t0700200-01
Chr01	irgsp1_rep	CDS	28982741	28983174	.	+	0	Parent=Os01t0700200-01
Chr01	irgsp1_rep	CDS	28983266	28983410	.	+	1	Parent=Os01t0700200-01
Chr01	irgsp1_rep	three_prime_UTR	28983411	28983863	.	+	.	Parent=Os01t0700200-01
Chr01	irgsp1_rep	mRNA	28984499	28986016	.	-	.	ID=Os01t0700300-00;Name=Os01t0700300-00;Locus_id=Os01g0700300;Oryzabase Gene Name Synonym(s)=SABATH methyltransferase Group B2;Note=Similar to JMT.;Transcript_evidence=EU958258 (DDBJ);ORF_evidence=A2ZWY8 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=SAM dependent carboxyl methyltransferase (IPR005299);Oryzabase=23393;TENOR=Os01t0700300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	28985879	28986016	.	-	0	Parent=Os01t0700300-00
Chr01	irgsp1_rep	CDS	28985330	28985753	.	-	0	Parent=Os01t0700300-00
Chr01	irgsp1_rep	CDS	28984965	28985213	.	-	2	Parent=Os01t0700300-00
Chr01	irgsp1_rep	CDS	28984499	28984878	.	-	2	Parent=Os01t0700300-00
Chr01	irgsp1_rep	mRNA	28991293	28992844	.	-	.	ID=Os01t0700400-00;Name=Os01t0700400-00;Locus_id=Os01g0700400;Note=Hypothetical protein.;Transcript_evidence=tplb0024g24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0700400-00
Chr01	irgsp1_rep	five_prime_UTR	28992255	28992844	.	-	.	Parent=Os01t0700400-00
Chr01	irgsp1_rep	five_prime_UTR	28992097	28992117	.	-	.	Parent=Os01t0700400-00
Chr01	irgsp1_rep	CDS	28991386	28992096	.	-	0	Parent=Os01t0700400-00
Chr01	irgsp1_rep	three_prime_UTR	28991293	28991385	.	-	.	Parent=Os01t0700400-00
Chr01	irgsp1_rep	mRNA	28991472	28993283	.	+	.	ID=Os01t0700500-01;Name=Os01t0700500-01;Locus_id=Os01g0700500;Note=Similar to Flavonoid 3-monooxygenase.;Transcript_evidence=AK072715 (DDBJ%2C Best hit);ORF_evidence=B4FQ24 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J023141G11;TENOR=Os01t0700500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	28991472	28991473	.	+	.	Parent=Os01t0700500-01
Chr01	irgsp1_rep	CDS	28991474	28992121	.	+	0	Parent=Os01t0700500-01
Chr01	irgsp1_rep	CDS	28992257	28992889	.	+	0	Parent=Os01t0700500-01
Chr01	irgsp1_rep	three_prime_UTR	28992890	28993283	.	+	.	Parent=Os01t0700500-01
Chr01	irgsp1_rep	mRNA	28991725	28992923	.	+	.	ID=Os01t0700500-02;Name=Os01t0700500-02;Locus_id=Os01g0700500;Note=Similar to Flavonoid 3-monooxygenase.;Transcript_evidence=AK119264 (DDBJ%2C Best hit);ORF_evidence=B4FQ24 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=001-130-A04;Expression=AK119264;TENOR=Os01t0700500-02;KEGG=Os01t0700500-02
Chr01	irgsp1_rep	five_prime_UTR	28991725	28991725	.	+	.	Parent=Os01t0700500-02
Chr01	irgsp1_rep	CDS	28991726	28992121	.	+	0	Parent=Os01t0700500-02
Chr01	irgsp1_rep	CDS	28992257	28992889	.	+	0	Parent=Os01t0700500-02
Chr01	irgsp1_rep	three_prime_UTR	28992890	28992923	.	+	.	Parent=Os01t0700500-02
Chr01	irgsp1_rep	mRNA	29020797	29025975	.	+	.	ID=Os01t0700900-01;Name=Os01t0700900-01;Locus_id=Os01g0700900;CGSNL Gene Symbol=SLB1;CGSNL Gene Name=STRIGOLACTONE BIOSYNTHESIS 1;Oryzabase Gene Symbol Synonym(s)=OsSLB1%2C Os900/CYP711A2%2C Os900%2C CYP711A2%2C OsCYP711A2;Oryzabase Gene Name Synonym(s)=SL biosynthesis gene 1%2C CytoChrome P450 711A2;Note=Similar to CytoChrome P450 monooxygenase.;Transcript_evidence=AK067688 (DDBJ%2C Best hit);ORF_evidence=C4PJN6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);NIAS_FLcDNA=J013117E18;Oryzabase=15631;TENOR=Os01t0700900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	29020797	29020843	.	+	.	Parent=Os01t0700900-01
Chr01	irgsp1_rep	CDS	29020844	29021070	.	+	0	Parent=Os01t0700900-01
Chr01	irgsp1_rep	CDS	29021181	29021333	.	+	1	Parent=Os01t0700900-01
Chr01	irgsp1_rep	CDS	29023687	29023699	.	+	1	Parent=Os01t0700900-01
Chr01	irgsp1_rep	three_prime_UTR	29023700	29023806	.	+	.	Parent=Os01t0700900-01
Chr01	irgsp1_rep	three_prime_UTR	29024272	29025079	.	+	.	Parent=Os01t0700900-01
Chr01	irgsp1_rep	three_prime_UTR	29025155	29025253	.	+	.	Parent=Os01t0700900-01
Chr01	irgsp1_rep	three_prime_UTR	29025494	29025975	.	+	.	Parent=Os01t0700900-01
Chr01	irgsp1_rep	mRNA	29020797	29025826	.	+	.	ID=Os01t0700900-02;Name=Os01t0700900-02;Locus_id=Os01g0700900;RAP-DB Gene Symbol Synonym(s)=SLB1%2C Os1900%2C CYP711A2;RAP-DB Gene Name Synonym(s)=STRIGOLACTONE BIOSYNTHESIS 1;CGSNL Gene Symbol=SLB1;CGSNL Gene Name=STRIGOLACTONE BIOSYNTHESIS 1;Oryzabase Gene Symbol Synonym(s)=OsSLB1%2C Os900/CYP711A2%2C Os900%2C CYP711A2%2C OsCYP711A2;Oryzabase Gene Name Synonym(s)=SL biosynthesis gene 1%2C CytoChrome P450 711A2;Note=CytoChrome P450 family member%2C  Homolog of Arabidopsis MORE AXILLARY GROWTH 1 (MAX1)%2C Strigolactone biosynthesis;Transcript_evidence=JX235697,JX566701;ORF_evidence=M9R6D3;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 superfamily (IPR036396),CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);Manual Curation=March 19%2C 2018;Literature_PMID=29479714,24464483,23424248;Oryzabase=15631
Chr01	irgsp1_rep	five_prime_UTR	29020797	29020843	.	+	.	Parent=Os01t0700900-02
Chr01	irgsp1_rep	CDS	29020844	29021070	.	+	0	Parent=Os01t0700900-02
Chr01	irgsp1_rep	CDS	29021181	29021333	.	+	1	Parent=Os01t0700900-02
Chr01	irgsp1_rep	CDS	29024272	29025082	.	+	1	Parent=Os01t0700900-02
Chr01	irgsp1_rep	CDS	29025158	29025253	.	+	0	Parent=Os01t0700900-02
Chr01	irgsp1_rep	CDS	29025494	29025826	.	+	0	Parent=Os01t0700900-02
Chr01	irgsp1_rep	mRNA	29020887	29025817	.	-	.	ID=Os01t0701100-00;Name=Os01t0701100-00;Locus_id=Os01g0701100;Note=Hypothetical protein.;Transcript_evidence=tplb0051d09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0701100-00
Chr01	irgsp1_rep	five_prime_UTR	29025465	29025817	.	-	.	Parent=Os01t0701100-00
Chr01	irgsp1_rep	five_prime_UTR	29025198	29025223	.	-	.	Parent=Os01t0701100-00
Chr01	irgsp1_rep	CDS	29025150	29025197	.	-	0	Parent=Os01t0701100-00
Chr01	irgsp1_rep	CDS	29024600	29025073	.	-	0	Parent=Os01t0701100-00
Chr01	irgsp1_rep	three_prime_UTR	29024259	29024599	.	-	.	Parent=Os01t0701100-00
Chr01	irgsp1_rep	three_prime_UTR	29021170	29021324	.	-	.	Parent=Os01t0701100-00
Chr01	irgsp1_rep	three_prime_UTR	29020887	29021064	.	-	.	Parent=Os01t0701100-00
Chr01	irgsp1_rep	mRNA	29036414	29041387	.	-	.	ID=Os01t0701350-00;Name=Os01t0701350-00;Locus_id=Os01g0701350;Note=Hypothetical protein.;Transcript_evidence=tplb0051d09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0701350-00
Chr01	irgsp1_rep	five_prime_UTR	29041034	29041387	.	-	.	Parent=Os01t0701350-00
Chr01	irgsp1_rep	five_prime_UTR	29040843	29040948	.	-	.	Parent=Os01t0701350-00
Chr01	irgsp1_rep	five_prime_UTR	29040686	29040724	.	-	.	Parent=Os01t0701350-00
Chr01	irgsp1_rep	CDS	29040266	29040685	.	-	0	Parent=Os01t0701350-00
Chr01	irgsp1_rep	three_prime_UTR	29039914	29040265	.	-	.	Parent=Os01t0701350-00
Chr01	irgsp1_rep	three_prime_UTR	29036717	29036853	.	-	.	Parent=Os01t0701350-00
Chr01	irgsp1_rep	three_prime_UTR	29036414	29036601	.	-	.	Parent=Os01t0701350-00
Chr01	irgsp1_rep	mRNA	29036327	29041621	.	+	.	ID=Os01t0701400-01;Name=Os01t0701400-01;Locus_id=Os01g0701400;RAP-DB Gene Symbol Synonym(s)=SLB2%2C Os1400%2C CYP711A3;RAP-DB Gene Name Synonym(s)=STRIGOLACTONE BIOSYNTHESIS 2;CGSNL Gene Symbol=SLB2;CGSNL Gene Name=STRIGOLACTONE BIOSYNTHESIS 2;Oryzabase Gene Symbol Synonym(s)=CYP711A1%2C OsCYP711A1%2C Os1400/CYP711A3%2C Os1400%2C CYP711A3%2C OsCYP711A3;Oryzabase Gene Name Synonym(s)=SL biosynthesis gene 2%2C CytoChrome P450 711A3;Note=CytoChrome P450 family member%2C  Homolog of Arabidopsis MORE AXILLARY GROWTH 1 (MAX1)%2C Strigolactone biosynthesis;Transcript_evidence=JX235696;ORF_evidence=W5QV10;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 superfamily (IPR036396),CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);Manual Curation=March 19%2C 2018;Literature_PMID=29479714,24464483,23424248;Oryzabase=15632;TENOR=Os01t0701400-00
Chr01	irgsp1_rep	five_prime_UTR	29036327	29036370	.	+	.	Parent=Os01t0701400-01
Chr01	irgsp1_rep	CDS	29036371	29036597	.	+	0	Parent=Os01t0701400-01
Chr01	irgsp1_rep	CDS	29036710	29036862	.	+	1	Parent=Os01t0701400-01
Chr01	irgsp1_rep	CDS	29039920	29040733	.	+	1	Parent=Os01t0701400-01
Chr01	irgsp1_rep	CDS	29040850	29040945	.	+	0	Parent=Os01t0701400-01
Chr01	irgsp1_rep	CDS	29041029	29041364	.	+	0	Parent=Os01t0701400-01
Chr01	irgsp1_rep	three_prime_UTR	29041365	29041621	.	+	.	Parent=Os01t0701400-01
Chr01	irgsp1_rep	mRNA	29045049	29047994	.	+	.	ID=Os01t0701500-01;Name=Os01t0701500-01;Locus_id=Os01g0701500;RAP-DB Gene Symbol Synonym(s)=Os1500%2C CYP711A4;Oryzabase Gene Symbol Synonym(s)=OsMAX1c%2C MAX1c%2C Os1500/CYP711A4%2C Os1500%2C CYP711A4%2C OsCYP711A4;Oryzabase Gene Name Synonym(s)=MORE AXILLARY GROWTH 1c%2C CytoChrome P450 711A4;Note=CytoChrome P450 family member%2C  Homolog of Arabidopsis MORE AXILLARY GROWTH 1 (MAX1)%2C Functionally incomplete P450 protein as a result of a premature stop codon;Transcript_evidence=JX566699;ORF_evidence=A2ZWY7;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 superfamily (IPR036396),CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);Manual Curation=March 20%2C 2018;Literature_PMID=29479714,23424248;Oryzabase=19608;TENOR=Os01t0701500-00;KEGG=Os01t0701500-00
Chr01	irgsp1_rep	CDS	29045049	29045272	.	+	0	Parent=Os01t0701500-01
Chr01	irgsp1_rep	CDS	29045558	29045710	.	+	1	Parent=Os01t0701500-01
Chr01	irgsp1_rep	CDS	29046232	29047039	.	+	1	Parent=Os01t0701500-01
Chr01	irgsp1_rep	CDS	29047136	29047231	.	+	0	Parent=Os01t0701500-01
Chr01	irgsp1_rep	CDS	29047725	29047994	.	+	0	Parent=Os01t0701500-01
Chr01	irgsp1_rep	mRNA	29045089	29048048	.	-	.	ID=Os01t0701600-00;Name=Os01t0701600-00;Locus_id=Os01g0701600;Note=Hypothetical protein.;Transcript_evidence=tplb0051d09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0701600-00
Chr01	irgsp1_rep	five_prime_UTR	29047730	29048048	.	-	.	Parent=Os01t0701600-00
Chr01	irgsp1_rep	five_prime_UTR	29047120	29047234	.	-	.	Parent=Os01t0701600-00
Chr01	irgsp1_rep	five_prime_UTR	29046274	29047030	.	-	.	Parent=Os01t0701600-00
Chr01	irgsp1_rep	CDS	29046247	29046273	.	-	0	Parent=Os01t0701600-00
Chr01	irgsp1_rep	CDS	29045537	29045729	.	-	0	Parent=Os01t0701600-00
Chr01	irgsp1_rep	CDS	29045132	29045247	.	-	2	Parent=Os01t0701600-00
Chr01	irgsp1_rep	three_prime_UTR	29045089	29045131	.	-	.	Parent=Os01t0701600-00
Chr01	irgsp1_rep	mRNA	29050777	29053445	.	-	.	ID=Os01t0701700-01;Name=Os01t0701700-01;Locus_id=Os01g0701700;Oryzabase Gene Name Synonym(s)=SABATH methyltransferase Group B2;Note=SAM dependent carboxyl methyltransferase family protein.;Transcript_evidence=AK108651 (DDBJ%2C Best hit);ORF_evidence=A2ZWY8 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=SAM dependent carboxyl methyltransferase (IPR005299);NIAS_FLcDNA=002-148-C09;Oryzabase=23394;Expression=AK108651;TENOR=Os01t0701700-01;KEGG=Os01t0701700-01
Chr01	irgsp1_rep	five_prime_UTR	29053352	29053445	.	-	.	Parent=Os01t0701700-01
Chr01	irgsp1_rep	five_prime_UTR	29052363	29052390	.	-	.	Parent=Os01t0701700-01
Chr01	irgsp1_rep	CDS	29052246	29052362	.	-	0	Parent=Os01t0701700-01
Chr01	irgsp1_rep	CDS	29051725	29052138	.	-	0	Parent=Os01t0701700-01
Chr01	irgsp1_rep	CDS	29051369	29051641	.	-	0	Parent=Os01t0701700-01
Chr01	irgsp1_rep	CDS	29050948	29051283	.	-	0	Parent=Os01t0701700-01
Chr01	irgsp1_rep	three_prime_UTR	29050777	29050947	.	-	.	Parent=Os01t0701700-01
Chr01	irgsp1_rep	mRNA	29067275	29072196	.	-	.	ID=Os01t0701900-01;Name=Os01t0701900-01;Locus_id=Os01g0701900;Oryzabase Gene Symbol Synonym(s)=OsSNDP5%2C SNDP5;Oryzabase Gene Name Synonym(s)=SPO20 homolog%2C Sec14-nodulin domain protein 5%2C Sec14-nodulin domain-containing protein 5;Note=Similar to Phosphatidylinositol transfer-like protein III.;Transcript_evidence=AK066793 (DDBJ%2C Best hit);ORF_evidence=Q94FN1 (UniProt);InterPro=Cellular retinaldehyde-binding/triple function%2C C-terminal (IPR001251),Cellular retinaldehyde-binding/triple function%2C N-terminal (IPR008273),Phosphatidylinositol transfer protein-like%2C N-terminal (IPR011074);NIAS_FLcDNA=J013084O22;Oryzabase=20425;Expression=AK066793;TENOR=Os01t0701900-01;KEGG=Os01t0701900-01
Chr01	irgsp1_rep	five_prime_UTR	29072194	29072196	.	-	.	Parent=Os01t0701900-01
Chr01	irgsp1_rep	CDS	29071929	29072193	.	-	0	Parent=Os01t0701900-01
Chr01	irgsp1_rep	CDS	29071189	29071492	.	-	2	Parent=Os01t0701900-01
Chr01	irgsp1_rep	CDS	29070968	29071064	.	-	1	Parent=Os01t0701900-01
Chr01	irgsp1_rep	CDS	29070608	29070874	.	-	0	Parent=Os01t0701900-01
Chr01	irgsp1_rep	CDS	29070452	29070529	.	-	0	Parent=Os01t0701900-01
Chr01	irgsp1_rep	CDS	29070204	29070305	.	-	0	Parent=Os01t0701900-01
Chr01	irgsp1_rep	CDS	29070074	29070123	.	-	0	Parent=Os01t0701900-01
Chr01	irgsp1_rep	CDS	29069898	29069997	.	-	1	Parent=Os01t0701900-01
Chr01	irgsp1_rep	CDS	29069692	29069790	.	-	0	Parent=Os01t0701900-01
Chr01	irgsp1_rep	CDS	29069496	29069606	.	-	0	Parent=Os01t0701900-01
Chr01	irgsp1_rep	CDS	29069155	29069278	.	-	0	Parent=Os01t0701900-01
Chr01	irgsp1_rep	CDS	29068584	29068739	.	-	2	Parent=Os01t0701900-01
Chr01	irgsp1_rep	CDS	29068339	29068505	.	-	2	Parent=Os01t0701900-01
Chr01	irgsp1_rep	CDS	29068003	29068077	.	-	0	Parent=Os01t0701900-01
Chr01	irgsp1_rep	CDS	29067455	29067475	.	-	0	Parent=Os01t0701900-01
Chr01	irgsp1_rep	three_prime_UTR	29067275	29067454	.	-	.	Parent=Os01t0701900-01
Chr01	irgsp1_rep	mRNA	29072787	29076338	.	-	.	ID=Os01t0702000-01;Name=Os01t0702000-01;Locus_id=Os01g0702000;Oryzabase Gene Symbol Synonym(s)=OsBBD1;Note=Protein of unknown function DUF151 domain containing protein.;Transcript_evidence=AK065414 (DDBJ%2C Best hit);ORF_evidence=Q09LL3 (UniProt);InterPro=Domain of unknown function DUF151 (IPR003729);NIAS_FLcDNA=J013022J10;Oryzabase=14280;Expression=AK065414;TENOR=Os01t0702000-01;KEGG=Os01t0702000-01
Chr01	irgsp1_rep	five_prime_UTR	29076227	29076338	.	-	.	Parent=Os01t0702000-01
Chr01	irgsp1_rep	five_prime_UTR	29076025	29076025	.	-	.	Parent=Os01t0702000-01
Chr01	irgsp1_rep	CDS	29075712	29076024	.	-	0	Parent=Os01t0702000-01
Chr01	irgsp1_rep	CDS	29075261	29075431	.	-	2	Parent=Os01t0702000-01
Chr01	irgsp1_rep	CDS	29075124	29075173	.	-	2	Parent=Os01t0702000-01
Chr01	irgsp1_rep	CDS	29074949	29075005	.	-	0	Parent=Os01t0702000-01
Chr01	irgsp1_rep	CDS	29074589	29074654	.	-	0	Parent=Os01t0702000-01
Chr01	irgsp1_rep	CDS	29074188	29074262	.	-	0	Parent=Os01t0702000-01
Chr01	irgsp1_rep	CDS	29073633	29073748	.	-	0	Parent=Os01t0702000-01
Chr01	irgsp1_rep	CDS	29073457	29073548	.	-	1	Parent=Os01t0702000-01
Chr01	irgsp1_rep	CDS	29073139	29073194	.	-	2	Parent=Os01t0702000-01
Chr01	irgsp1_rep	three_prime_UTR	29073136	29073138	.	-	.	Parent=Os01t0702000-01
Chr01	irgsp1_rep	three_prime_UTR	29072787	29073021	.	-	.	Parent=Os01t0702000-01
Chr01	irgsp1_rep	mRNA	29105137	29108734	.	+	.	ID=Os01t0702300-00;Name=Os01t0702300-00;Locus_id=Os01g0702300;Oryzabase Gene Symbol Synonym(s)=OsSub2%2C SUB2%2C SLP1%2C OsSLP1;Oryzabase Gene Name Synonym(s)=Subtilisin 2%2C SUBTILISIN 2%2C SUBTILISIN-LIKE PROTEASE 1;Note=Peptidase S8/S53%2C subtilisin/kexin/sedolisin domain containing protein.;Transcript_evidence=AK368290 (DDBJ);ORF_evidence=NP_001043993.2 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);Oryzabase=20094;TENOR=Os01t0702300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	29105137	29105416	.	+	0	Parent=Os01t0702300-00
Chr01	irgsp1_rep	CDS	29106234	29106339	.	+	2	Parent=Os01t0702300-00
Chr01	irgsp1_rep	CDS	29106429	29106939	.	+	1	Parent=Os01t0702300-00
Chr01	irgsp1_rep	CDS	29107164	29107507	.	+	0	Parent=Os01t0702300-00
Chr01	irgsp1_rep	CDS	29107610	29107724	.	+	1	Parent=Os01t0702300-00
Chr01	irgsp1_rep	CDS	29107835	29108048	.	+	0	Parent=Os01t0702300-00
Chr01	irgsp1_rep	CDS	29108145	29108734	.	+	2	Parent=Os01t0702300-00
Chr01	irgsp1_rep	mRNA	29109936	29119338	.	+	.	ID=Os01t0702400-01;Name=Os01t0702400-01;Locus_id=Os01g0702400;Oryzabase Gene Symbol Synonym(s)=OsWD40-22;Note=WD40/YVTN repeat-like domain containing protein.;Transcript_evidence=AK121315 (DDBJ%2C Best hit);ORF_evidence=B8A8A9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40 repeat%2C subgroup (IPR019781),Transcription factor IIIC%2C 90kDa subunit%2C N-terminal (IPR024761);NIAS_FLcDNA=J023113A21;Oryzabase=10703;Expression=AK121315;TENOR=Os01t0702400-01;KEGG=Os01t0702400-01
Chr01	irgsp1_rep	five_prime_UTR	29109936	29110179	.	+	.	Parent=Os01t0702400-01
Chr01	irgsp1_rep	five_prime_UTR	29110250	29110465	.	+	.	Parent=Os01t0702400-01
Chr01	irgsp1_rep	CDS	29110466	29110582	.	+	0	Parent=Os01t0702400-01
Chr01	irgsp1_rep	CDS	29110671	29110755	.	+	0	Parent=Os01t0702400-01
Chr01	irgsp1_rep	CDS	29111315	29111417	.	+	2	Parent=Os01t0702400-01
Chr01	irgsp1_rep	CDS	29111541	29111625	.	+	1	Parent=Os01t0702400-01
Chr01	irgsp1_rep	CDS	29112157	29112240	.	+	0	Parent=Os01t0702400-01
Chr01	irgsp1_rep	CDS	29112370	29112473	.	+	0	Parent=Os01t0702400-01
Chr01	irgsp1_rep	CDS	29113265	29113526	.	+	1	Parent=Os01t0702400-01
Chr01	irgsp1_rep	CDS	29113721	29114157	.	+	0	Parent=Os01t0702400-01
Chr01	irgsp1_rep	CDS	29114380	29114461	.	+	1	Parent=Os01t0702400-01
Chr01	irgsp1_rep	CDS	29116656	29116832	.	+	0	Parent=Os01t0702400-01
Chr01	irgsp1_rep	CDS	29116903	29116956	.	+	0	Parent=Os01t0702400-01
Chr01	irgsp1_rep	CDS	29117383	29117475	.	+	0	Parent=Os01t0702400-01
Chr01	irgsp1_rep	CDS	29117555	29117620	.	+	0	Parent=Os01t0702400-01
Chr01	irgsp1_rep	CDS	29117735	29117781	.	+	0	Parent=Os01t0702400-01
Chr01	irgsp1_rep	CDS	29117908	29118173	.	+	1	Parent=Os01t0702400-01
Chr01	irgsp1_rep	CDS	29118330	29118588	.	+	2	Parent=Os01t0702400-01
Chr01	irgsp1_rep	CDS	29118735	29119119	.	+	1	Parent=Os01t0702400-01
Chr01	irgsp1_rep	three_prime_UTR	29119120	29119338	.	+	.	Parent=Os01t0702400-01
Chr01	irgsp1_rep	mRNA	29119776	29123056	.	+	.	ID=Os01t0702450-00;Name=Os01t0702450-00;Locus_id=Os01g0702450;Note=Similar to Chaperone protein dnaJ 10.;Transcript_evidence=ab initio prediction;ORF_evidence=B6T7D7 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Heat shock protein DnaJ%2C conserved site (IPR018253);TENOR=Os01t0702450-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	29119776	29119862	.	+	0	Parent=Os01t0702450-00
Chr01	irgsp1_rep	CDS	29119993	29120052	.	+	0	Parent=Os01t0702450-00
Chr01	irgsp1_rep	CDS	29120847	29120929	.	+	0	Parent=Os01t0702450-00
Chr01	irgsp1_rep	CDS	29121137	29121299	.	+	1	Parent=Os01t0702450-00
Chr01	irgsp1_rep	CDS	29121438	29121567	.	+	0	Parent=Os01t0702450-00
Chr01	irgsp1_rep	CDS	29121759	29121917	.	+	2	Parent=Os01t0702450-00
Chr01	irgsp1_rep	CDS	29122038	29122207	.	+	2	Parent=Os01t0702450-00
Chr01	irgsp1_rep	CDS	29122333	29122413	.	+	0	Parent=Os01t0702450-00
Chr01	irgsp1_rep	CDS	29122979	29123056	.	+	0	Parent=Os01t0702450-00
Chr01	irgsp1_rep	mRNA	29123535	29124590	.	+	.	ID=Os01t0702500-01;Name=Os01t0702500-01;Locus_id=Os01g0702500;CGSNL Gene Symbol=LEA22;CGSNL Gene Name=LATE EMBRYOGENESIS ABUNDANT PROTEIN 24;Oryzabase Gene Symbol Synonym(s)=OsLEA22%2C RAB25%2C OsRab16%2C Rab16%2C OsABA45%2C ABA45;Oryzabase Gene Name Synonym(s)=late embryogenesis abundant protein 22%2C Responsive to abscisic acid 25%2C Dehydrin RAB25;Note=Similar to Dehydrin Rab25.;Transcript_evidence=AK063691 (DDBJ%2C Best hit);ORF_evidence=P30287 (UniProt);GO=Biological Process: response to stress (GO:0006950),Biological Process: response to water (GO:0009415);InterPro=Dehydrin (IPR000167);NIAS_FLcDNA=001-119-F09;Oryzabase=10187;Expression=AK063691;TENOR=Os01t0702500-01;KEGG=Os01t0702500-01
Chr01	irgsp1_rep	CDS	29123535	29123605	.	+	0	Parent=Os01t0702500-01
Chr01	irgsp1_rep	CDS	29123825	29124089	.	+	1	Parent=Os01t0702500-01
Chr01	irgsp1_rep	CDS	29124167	29124397	.	+	0	Parent=Os01t0702500-01
Chr01	irgsp1_rep	three_prime_UTR	29124398	29124590	.	+	.	Parent=Os01t0702500-01
Chr01	irgsp1_rep	mRNA	29132173	29133909	.	-	.	ID=Os01t0702700-01;Name=Os01t0702700-01;Locus_id=Os01g0702700;Oryzabase Gene Symbol Synonym(s)=OsMYB14%2C MYB14%2C JAdMYB1;Oryzabase Gene Name Synonym(s)=MYB transcription factor 14%2C JA-dependent MYB1;Note=Similar to Transcription factor MYB86 (Myb-related protein 86) (AtMYB86) (Myb homolog 4) (AtMyb4).;Transcript_evidence=AK111782 (DDBJ%2C Best hit);ORF_evidence=NP_001150099.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J023084H22;Oryzabase=16712;Expression=AK111782;TENOR=Os01t0702700-01;KEGG=Os01t0702700-01
Chr01	irgsp1_rep	five_prime_UTR	29133631	29133909	.	-	.	Parent=Os01t0702700-01
Chr01	irgsp1_rep	CDS	29133489	29133630	.	-	0	Parent=Os01t0702700-01
Chr01	irgsp1_rep	CDS	29133256	29133385	.	-	2	Parent=Os01t0702700-01
Chr01	irgsp1_rep	CDS	29132501	29133134	.	-	1	Parent=Os01t0702700-01
Chr01	irgsp1_rep	three_prime_UTR	29132173	29132500	.	-	.	Parent=Os01t0702700-01
Chr01	irgsp1_rep	mRNA	29146688	29148255	.	-	.	ID=Os01t0702900-01;Name=Os01t0702900-01;Locus_id=Os01g0702900;Note=Similar to Sucrose-phosphate synthase (EC 2.4.1.14).;Transcript_evidence=AK071158 (DDBJ%2C Best hit);ORF_evidence=B9F3G5 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: polynucleotide adenylyltransferase activity (GO:0004652);InterPro=Poly(A) polymerase%2C central domain (IPR007012);NIAS_FLcDNA=J023076C15;Expression=AK071158;TENOR=Os01t0702900-01;KEGG=Os01t0702900-01 (EC:2.4.1.14%2C EC:2.7.7.19)
Chr01	irgsp1_rep	five_prime_UTR	29148107	29148255	.	-	.	Parent=Os01t0702900-01
Chr01	irgsp1_rep	CDS	29147717	29148106	.	-	0	Parent=Os01t0702900-01
Chr01	irgsp1_rep	three_prime_UTR	29146688	29147716	.	-	.	Parent=Os01t0702900-01
Chr01	irgsp1_rep	mRNA	29146837	29148391	.	+	.	ID=Os01t0703000-01;Name=Os01t0703000-01;Locus_id=Os01g0703000;Note=Similar to Poly(A) polymerase gamma (EC 2.7.7.19) (PAP gamma) (Polynucleotide adenylyltransferase gamma) (SRP RNA 3' adenylating enzyme).;Transcript_evidence=AK109837 (DDBJ%2C Best hit),AK067691 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-148-D09,J013119M05;Expression=AK109837;TENOR=Os01t0703000-01;KEGG=Os01t0703000-01 (EC:2.7.7.19)
Chr01	irgsp1_rep	five_prime_UTR	29146837	29146981	.	+	.	Parent=Os01t0703000-01
Chr01	irgsp1_rep	CDS	29146982	29147377	.	+	0	Parent=Os01t0703000-01
Chr01	irgsp1_rep	three_prime_UTR	29147378	29148391	.	+	.	Parent=Os01t0703000-01
Chr01	irgsp1_rep	mRNA	29152729	29154822	.	+	.	ID=Os01t0703300-01;Name=Os01t0703300-01;Locus_id=Os01g0703300;Oryzabase Gene Name Synonym(s)="Zinc finger%2C C3HC4-type domain-containing protein";Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK099917 (DDBJ%2C Best hit);ORF_evidence=NP_851197.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J013116I02;Oryzabase=23616;Expression=AK099917;TENOR=Os01t0703300-01;KEGG=Os01t0703300-01
Chr01	irgsp1_rep	five_prime_UTR	29152729	29152758	.	+	.	Parent=Os01t0703300-01
Chr01	irgsp1_rep	CDS	29152759	29153171	.	+	0	Parent=Os01t0703300-01
Chr01	irgsp1_rep	CDS	29153247	29153604	.	+	1	Parent=Os01t0703300-01
Chr01	irgsp1_rep	CDS	29154197	29154340	.	+	0	Parent=Os01t0703300-01
Chr01	irgsp1_rep	three_prime_UTR	29154341	29154822	.	+	.	Parent=Os01t0703300-01
Chr01	irgsp1_rep	mRNA	29153306	29154757	.	+	.	ID=Os01t0703300-02;Name=Os01t0703300-02;Locus_id=Os01g0703300;Oryzabase Gene Name Synonym(s)="Zinc finger%2C C3HC4-type domain-containing protein";Note=Similar to zinc finger (C3HC4-type RING finger) family protein.;Transcript_evidence=AK069643 (DDBJ%2C Best hit);ORF_evidence=NP_851197.1 (RefSeq);NIAS_FLcDNA=J023027O19;Oryzabase=23616;TENOR=Os01t0703300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	29153306	29153307	.	+	.	Parent=Os01t0703300-02
Chr01	irgsp1_rep	CDS	29153308	29153685	.	+	0	Parent=Os01t0703300-02
Chr01	irgsp1_rep	three_prime_UTR	29153686	29154757	.	+	.	Parent=Os01t0703300-02
Chr01	irgsp1_rep	mRNA	29158306	29162547	.	+	.	ID=Os01t0703400-01;Name=Os01t0703400-01;Locus_id=Os01g0703400;Oryzabase Gene Symbol Synonym(s)=OsFPPS1%2C FPPS1%2C FPPS%2C OsFPS;Oryzabase Gene Name Synonym(s)=farnesyl diphosphate synthase 1%2C farnesyl diphosphate synthase%2C FDP synthase;Note=Similar to Farnesyl pyrophosphate synthetase (FPP synthetase) (FPS) (Farnesyl diphosphate synthetase) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1)%3B Geranyltranstransferase (EC 2.5.1.10)].;Transcript_evidence=AK061657 (DDBJ%2C Best hit);ORF_evidence=B6TAB8 (UniProt);GO=Biological Process: isoprenoid biosynthetic process (GO:0008299);InterPro=Polyprenyl synthetase (IPR000092),Terpenoid synthase (IPR008949);NIAS_FLcDNA=001-036-D06;Oryzabase=11198;Expression=AK061657;TENOR=Os01t0703400-01;KEGG=Os01t0703400-01 (EC:2.5.1.1%2C EC:2.5.1.10)
Chr01	irgsp1_rep	five_prime_UTR	29158306	29158389	.	+	.	Parent=Os01t0703400-01
Chr01	irgsp1_rep	CDS	29158390	29158533	.	+	0	Parent=Os01t0703400-01
Chr01	irgsp1_rep	CDS	29160141	29160281	.	+	0	Parent=Os01t0703400-01
Chr01	irgsp1_rep	CDS	29160381	29160467	.	+	0	Parent=Os01t0703400-01
Chr01	irgsp1_rep	CDS	29160711	29160827	.	+	0	Parent=Os01t0703400-01
Chr01	irgsp1_rep	CDS	29160920	29161008	.	+	0	Parent=Os01t0703400-01
Chr01	irgsp1_rep	CDS	29161253	29161304	.	+	1	Parent=Os01t0703400-01
Chr01	irgsp1_rep	CDS	29161410	29161505	.	+	0	Parent=Os01t0703400-01
Chr01	irgsp1_rep	CDS	29161578	29161622	.	+	0	Parent=Os01t0703400-01
Chr01	irgsp1_rep	CDS	29161745	29161834	.	+	0	Parent=Os01t0703400-01
Chr01	irgsp1_rep	CDS	29161907	29161978	.	+	0	Parent=Os01t0703400-01
Chr01	irgsp1_rep	CDS	29162233	29162361	.	+	0	Parent=Os01t0703400-01
Chr01	irgsp1_rep	three_prime_UTR	29162362	29162547	.	+	.	Parent=Os01t0703400-01
Chr01	irgsp1_rep	mRNA	29166421	29170361	.	+	.	ID=Os01t0703600-01;Name=Os01t0703600-01;Locus_id=Os01g0703600;RAP-DB Gene Symbol Synonym(s)=SPL28;RAP-DB Gene Name Synonym(s)=SPOTTED LEAF 28;CGSNL Gene Symbol=SPL28;CGSNL Gene Name=SPOTTED LEAF 28;Note=Clathrin-associated adaptor protein complex 1 medium subunit mu1 (AP1M1)%2C Regulation of vesicular trafficking%2C Disease resistance;Transcript_evidence=AK065538 (Genbank),NM_001050536 (Genbank);ORF_evidence=Q0JK13 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: clathrin adaptor complex (GO:0030131),Molecular Function: protein binding (GO:0005515);InterPro=Clathrin adaptor%2C mu subunit (IPR001392),Clathrin adaptor%2C mu subunit%2C C-terminal (IPR008968),Longin-like (IPR011012),Clathrin adaptor%2C mu subunit%2C conserved site (IPR018240),AP complex%2C mu/sigma subunit (IPR022775);NIAS_FLcDNA=J013030K02;Manual Curation=December 14%2C 2010;Literature_PMID=19825016;Oryzabase=9016;Expression=AK065538;TENOR=Os01t0703600-01;KEGG=Os01t0703600-01
Chr01	irgsp1_rep	five_prime_UTR	29166421	29166660	.	+	.	Parent=Os01t0703600-01
Chr01	irgsp1_rep	CDS	29166661	29166789	.	+	0	Parent=Os01t0703600-01
Chr01	irgsp1_rep	CDS	29166891	29167040	.	+	0	Parent=Os01t0703600-01
Chr01	irgsp1_rep	CDS	29167128	29167190	.	+	0	Parent=Os01t0703600-01
Chr01	irgsp1_rep	CDS	29167283	29167459	.	+	0	Parent=Os01t0703600-01
Chr01	irgsp1_rep	CDS	29167539	29167642	.	+	0	Parent=Os01t0703600-01
Chr01	irgsp1_rep	CDS	29168885	29168992	.	+	1	Parent=Os01t0703600-01
Chr01	irgsp1_rep	CDS	29169079	29169175	.	+	1	Parent=Os01t0703600-01
Chr01	irgsp1_rep	CDS	29169283	29169380	.	+	0	Parent=Os01t0703600-01
Chr01	irgsp1_rep	CDS	29169461	29169602	.	+	1	Parent=Os01t0703600-01
Chr01	irgsp1_rep	CDS	29169684	29169806	.	+	0	Parent=Os01t0703600-01
Chr01	irgsp1_rep	CDS	29169904	29170002	.	+	0	Parent=Os01t0703600-01
Chr01	irgsp1_rep	three_prime_UTR	29170003	29170361	.	+	.	Parent=Os01t0703600-01
Chr01	irgsp1_rep	mRNA	29166428	29170361	.	+	.	ID=Os01t0703600-02;Name=Os01t0703600-02;Locus_id=Os01g0703600;CGSNL Gene Symbol=SPL28;CGSNL Gene Name=SPOTTED LEAF 28;Note=Similar to clathrin adaptor complexes medium subunit family protein.;Transcript_evidence=AK060762 (DDBJ%2C Best hit);ORF_evidence=XP_002889832.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: clathrin adaptor complex (GO:0030131),Molecular Function: protein binding (GO:0005515);InterPro=Clathrin adaptor%2C mu subunit (IPR001392),Clathrin adaptor%2C mu subunit%2C C-terminal (IPR008968),Longin-like (IPR011012),Clathrin adaptor%2C mu subunit%2C conserved site (IPR018240),AP complex%2C mu/sigma subunit (IPR022775);NIAS_FLcDNA=001-033-A04;Oryzabase=9016;Expression=AK060762;TENOR=Os01t0703600-02;KEGG=Os01t0703600-02
Chr01	irgsp1_rep	five_prime_UTR	29166428	29166660	.	+	.	Parent=Os01t0703600-02
Chr01	irgsp1_rep	CDS	29166661	29166789	.	+	0	Parent=Os01t0703600-02
Chr01	irgsp1_rep	CDS	29166891	29167040	.	+	0	Parent=Os01t0703600-02
Chr01	irgsp1_rep	CDS	29167128	29167190	.	+	0	Parent=Os01t0703600-02
Chr01	irgsp1_rep	CDS	29167283	29167459	.	+	0	Parent=Os01t0703600-02
Chr01	irgsp1_rep	CDS	29167539	29167642	.	+	0	Parent=Os01t0703600-02
Chr01	irgsp1_rep	CDS	29168885	29168992	.	+	1	Parent=Os01t0703600-02
Chr01	irgsp1_rep	CDS	29169079	29169175	.	+	1	Parent=Os01t0703600-02
Chr01	irgsp1_rep	CDS	29169283	29169380	.	+	0	Parent=Os01t0703600-02
Chr01	irgsp1_rep	CDS	29169461	29169602	.	+	1	Parent=Os01t0703600-02
Chr01	irgsp1_rep	CDS	29169698	29169703	.	+	0	Parent=Os01t0703600-02
Chr01	irgsp1_rep	three_prime_UTR	29169704	29169806	.	+	.	Parent=Os01t0703600-02
Chr01	irgsp1_rep	three_prime_UTR	29169904	29170361	.	+	.	Parent=Os01t0703600-02
Chr01	irgsp1_rep	mRNA	29166444	29170265	.	-	.	ID=Os01t0703800-00;Name=Os01t0703800-00;Locus_id=Os01g0703800;Note=Hypothetical protein.;Transcript_evidence=tplb0037b12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0703800-00
Chr01	irgsp1_rep	five_prime_UTR	29169901	29170265	.	-	.	Parent=Os01t0703800-00
Chr01	irgsp1_rep	five_prime_UTR	29169682	29169803	.	-	.	Parent=Os01t0703800-00
Chr01	irgsp1_rep	five_prime_UTR	29169457	29169600	.	-	.	Parent=Os01t0703800-00
Chr01	irgsp1_rep	five_prime_UTR	29169290	29169376	.	-	.	Parent=Os01t0703800-00
Chr01	irgsp1_rep	five_prime_UTR	29169079	29169180	.	-	.	Parent=Os01t0703800-00
Chr01	irgsp1_rep	five_prime_UTR	29168883	29168992	.	-	.	Parent=Os01t0703800-00
Chr01	irgsp1_rep	five_prime_UTR	29167571	29167640	.	-	.	Parent=Os01t0703800-00
Chr01	irgsp1_rep	CDS	29167539	29167570	.	-	0	Parent=Os01t0703800-00
Chr01	irgsp1_rep	CDS	29167240	29167459	.	-	1	Parent=Os01t0703800-00
Chr01	irgsp1_rep	three_prime_UTR	29167237	29167239	.	-	.	Parent=Os01t0703800-00
Chr01	irgsp1_rep	three_prime_UTR	29166897	29167055	.	-	.	Parent=Os01t0703800-00
Chr01	irgsp1_rep	three_prime_UTR	29166444	29166796	.	-	.	Parent=Os01t0703800-00
Chr01	irgsp1_rep	mRNA	29183845	29184972	.	-	.	ID=Os01t0704000-01;Name=Os01t0704000-01;Locus_id=Os01g0704000;Note=Pectinesterase inhibitor domain containing protein.;Transcript_evidence=AK069992 (DDBJ%2C Best hit);ORF_evidence=A2WU76 (UniProt);GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);NIAS_FLcDNA=J023038A03;Expression=AK069992;TENOR=Os01t0704000-01;KEGG=Os01t0704000-01
Chr01	irgsp1_rep	five_prime_UTR	29184862	29184972	.	-	.	Parent=Os01t0704000-01
Chr01	irgsp1_rep	CDS	29184682	29184861	.	-	0	Parent=Os01t0704000-01
Chr01	irgsp1_rep	CDS	29184117	29184548	.	-	0	Parent=Os01t0704000-01
Chr01	irgsp1_rep	three_prime_UTR	29183845	29184116	.	-	.	Parent=Os01t0704000-01
Chr01	irgsp1_rep	mRNA	29188850	29190936	.	+	.	ID=Os01t0704100-01;Name=Os01t0704100-01;Locus_id=Os01g0704100;RAP-DB Gene Symbol Synonym(s)=NRT2.3%2C OsNRT2.3%2C OsNRT2%3B1%2C OsNRT2.3a%2C OsNRT2.3b%2C OsNRT2%3B3a%2C OsNRT2.5;RAP-DB Gene Name Synonym(s)=HIGH AFFINITY NITRATE TRANSPORTER%2C high-affinity nitrate transporter 2.3;CGSNL Gene Symbol=NRT2.3;CGSNL Gene Name=HIGH AFFINITY NITRATE TRANSPORTER;Oryzabase Gene Symbol Synonym(s)=OsNRT2.3%2C OsNRT2%3B1%2C OsNRT2.3a%2C OsNRT2.3b%2C OsNRT2%3B3a%2C OsNRT2.5;Oryzabase Gene Name Synonym(s)=high-affinity nitrate transporter 2.3;Note=Nitrate transporter%2C Nitrate transport;Transcript_evidence=AK072215;ORF_evidence=Q5N9S1;GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral component of membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J013165G04;Manual Curation=June 27%2C 2014;Literature_PMID=23093362;Oryzabase=6249;TENOR=Os01t0704100-01
Chr01	irgsp1_rep	five_prime_UTR	29188850	29189071	.	+	.	Parent=Os01t0704100-01
Chr01	irgsp1_rep	CDS	29189072	29189259	.	+	0	Parent=Os01t0704100-01
Chr01	irgsp1_rep	CDS	29189350	29190622	.	+	1	Parent=Os01t0704100-01
Chr01	irgsp1_rep	three_prime_UTR	29190623	29190936	.	+	.	Parent=Os01t0704100-01
Chr01	irgsp1_rep	mRNA	29189030	29190922	.	+	.	ID=Os01t0704100-02;Name=Os01t0704100-02;Locus_id=Os01g0704100;RAP-DB Gene Symbol Synonym(s)=NRT2.3%2C OsNRT2.3a%2C OsNRT2.3%2C OsNRT2;RAP-DB Gene Name Synonym(s)=HIGH AFFINITY NITRATE TRANSPORTER%2C high-affinity nitrate transporter 2.3;CGSNL Gene Symbol=NRT2.3;CGSNL Gene Name=HIGH AFFINITY NITRATE TRANSPORTER;Oryzabase Gene Symbol Synonym(s)=OsNRT2.3%2C OsNRT2%3B1%2C OsNRT2.3a%2C OsNRT2.3b%2C OsNRT2%3B3a%2C OsNRT2.5;Oryzabase Gene Name Synonym(s)=high-affinity nitrate transporter 2.3;Note=Nitrate transporter%2C Long-distance nitrate transport;Transcript_evidence=AK109776;ORF_evidence=Q94JG1;GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral component of membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=002-147-B08;Manual Curation=June 27%2C 2014;Literature_PMID=23093362;Oryzabase=6249;TENOR=Os01t0704100-02;KEGG=Os01t0704100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	29189030	29189071	.	+	.	Parent=Os01t0704100-02
Chr01	irgsp1_rep	CDS	29189072	29190622	.	+	0	Parent=Os01t0704100-02
Chr01	irgsp1_rep	three_prime_UTR	29190623	29190922	.	+	.	Parent=Os01t0704100-02
Chr01	irgsp1_rep	mRNA	29191992	29194734	.	+	.	ID=Os01t0704200-01;Name=Os01t0704200-01;Locus_id=Os01g0704200;Note=Similar to predicted protein.;Transcript_evidence=AK241706 (DDBJ%2C Best hit);ORF_evidence=B9EZ19 (UniProt);NIAS_FLcDNA=J065196O17;TENOR=Os01t0704200-01;KEGG=Os01t0704200-01
Chr01	irgsp1_rep	five_prime_UTR	29191992	29192074	.	+	.	Parent=Os01t0704200-01
Chr01	irgsp1_rep	CDS	29192075	29192180	.	+	0	Parent=Os01t0704200-01
Chr01	irgsp1_rep	CDS	29192627	29192695	.	+	2	Parent=Os01t0704200-01
Chr01	irgsp1_rep	CDS	29192786	29193175	.	+	2	Parent=Os01t0704200-01
Chr01	irgsp1_rep	CDS	29193537	29193874	.	+	2	Parent=Os01t0704200-01
Chr01	irgsp1_rep	CDS	29194424	29194639	.	+	0	Parent=Os01t0704200-01
Chr01	irgsp1_rep	three_prime_UTR	29194640	29194734	.	+	.	Parent=Os01t0704200-01
Chr01	irgsp1_rep	mRNA	29196123	29197064	.	-	.	ID=Os01t0704250-00;Name=Os01t0704250-00;Locus_id=Os01g0704250;Note=Non-protein coding transcript.;Transcript_evidence=FP096021 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0704250-00
Chr01	irgsp1_rep	exon	29196408	29197064	.	-	.	Parent=Os01t0704250-00
Chr01	irgsp1_rep	exon	29196123	29196355	.	-	.	Parent=Os01t0704250-00
Chr01	irgsp1_rep	mRNA	29202204	29203802	.	-	.	ID=Os01t0704300-01;Name=Os01t0704300-01;Locus_id=Os01g0704300;Oryzabase Gene Symbol Synonym(s)=Os_F0670;Note=Conserved hypothetical protein.;Transcript_evidence=AK068954 (DDBJ%2C Best hit);ORF_evidence=B9EZ20 (UniProt);NIAS_FLcDNA=J023001I20;Oryzabase=17488;TENOR=Os01t0704300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	29203751	29203802	.	-	.	Parent=Os01t0704300-01
Chr01	irgsp1_rep	CDS	29203674	29203750	.	-	0	Parent=Os01t0704300-01
Chr01	irgsp1_rep	CDS	29202409	29203231	.	-	1	Parent=Os01t0704300-01
Chr01	irgsp1_rep	three_prime_UTR	29202204	29202408	.	-	.	Parent=Os01t0704300-01
Chr01	irgsp1_rep	mRNA	29206326	29209606	.	-	.	ID=Os01t0704400-01;Name=Os01t0704400-01;Locus_id=Os01g0704400;Note=Conserved hypothetical protein.;Transcript_evidence=AK072965 (DDBJ%2C Best hit);ORF_evidence=B8A8B5 (UniProt);NIAS_FLcDNA=J023149N21;TENOR=Os01t0704400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	29209422	29209606	.	-	.	Parent=Os01t0704400-01
Chr01	irgsp1_rep	CDS	29208884	29209421	.	-	0	Parent=Os01t0704400-01
Chr01	irgsp1_rep	CDS	29208685	29208753	.	-	2	Parent=Os01t0704400-01
Chr01	irgsp1_rep	CDS	29208409	29208557	.	-	2	Parent=Os01t0704400-01
Chr01	irgsp1_rep	three_prime_UTR	29208101	29208408	.	-	.	Parent=Os01t0704400-01
Chr01	irgsp1_rep	three_prime_UTR	29206326	29207379	.	-	.	Parent=Os01t0704400-01
Chr01	irgsp1_rep	mRNA	29216948	29221583	.	+	.	ID=Os01t0704700-01;Name=Os01t0704700-01;Locus_id=Os01g0704700;CGSNL Gene Symbol=CBSCLC2;CGSNL Gene Name=CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsCBSCLC2;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSCLC2%2C CBS domain containing protein OsCBSCLC2%2C CBS domain containing protein 2;Note=Similar to Chloride channel protein CLC-f (AtCLC-f). Splice isoform 2.;Transcript_evidence=AK100296 (DDBJ%2C Best hit);ORF_evidence=E2GMA7 (UniProt);GO=Biological Process: chloride transport (GO:0006821),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: ion channel activity (GO:0005216),Molecular Function: voltage-gated chloride channel activity (GO:0005247);InterPro=Chloride channel%2C voltage gated (IPR001807),Chloride channel%2C core (IPR014743);NIAS_FLcDNA=J023077A12;Oryzabase=10331;Expression=AK100296;TENOR=Os01t0704700-01;KEGG=Os01t0704700-01
Chr01	irgsp1_rep	five_prime_UTR	29216948	29217031	.	+	.	Parent=Os01t0704700-01
Chr01	irgsp1_rep	CDS	29217032	29217355	.	+	0	Parent=Os01t0704700-01
Chr01	irgsp1_rep	CDS	29217897	29218284	.	+	0	Parent=Os01t0704700-01
Chr01	irgsp1_rep	CDS	29218689	29218886	.	+	2	Parent=Os01t0704700-01
Chr01	irgsp1_rep	CDS	29219325	29219353	.	+	2	Parent=Os01t0704700-01
Chr01	irgsp1_rep	three_prime_UTR	29219354	29219835	.	+	.	Parent=Os01t0704700-01
Chr01	irgsp1_rep	three_prime_UTR	29219953	29220492	.	+	.	Parent=Os01t0704700-01
Chr01	irgsp1_rep	three_prime_UTR	29221018	29221220	.	+	.	Parent=Os01t0704700-01
Chr01	irgsp1_rep	three_prime_UTR	29221310	29221583	.	+	.	Parent=Os01t0704700-01
Chr01	irgsp1_rep	mRNA	29230315	29231441	.	+	.	ID=Os01t0705000-01;Name=Os01t0705000-01;Locus_id=Os01g0705000;Note=Hypothetical conserved gene.;Transcript_evidence=AK243273 (DDBJ%2C Best hit);ORF_evidence=Q5N8G0 (UniProt);NIAS_FLcDNA=J100049L05;TENOR=Os01t0705000-01;KEGG=Os01t0705000-01
Chr01	irgsp1_rep	five_prime_UTR	29230315	29230360	.	+	.	Parent=Os01t0705000-01
Chr01	irgsp1_rep	CDS	29230361	29231245	.	+	0	Parent=Os01t0705000-01
Chr01	irgsp1_rep	three_prime_UTR	29231246	29231441	.	+	.	Parent=Os01t0705000-01
Chr01	irgsp1_rep	mRNA	29231900	29232574	.	+	.	ID=Os01t0705100-00;Name=Os01t0705100-00;Locus_id=Os01g0705100;CGSNL Gene Symbol=GLP1-3;CGSNL Gene Name=GERMIN-LIKE PROTEIN 1-3;Oryzabase Gene Symbol Synonym(s)=OsGLP1-3%2C OsGLP1-2%2C GLP1-2;Oryzabase Gene Name Synonym(s)=Germin-like protein 1-3;Note=Similar to Germin-like protein.;Transcript_evidence=Q94JF3 (UniProt);ORF_evidence=Q94JF3 (UniProt);GO=Cellular Component: apoplast (GO:0048046),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),Germin%2C manganese binding site (IPR019780);Oryzabase=21417;TENOR=Os01t0705100-00
Chr01	irgsp1_rep	CDS	29231900	29232574	.	+	0	Parent=Os01t0705100-00
Chr01	irgsp1_rep	mRNA	29233040	29234256	.	-	.	ID=Os01t0705200-01;Name=Os01t0705200-01;Locus_id=Os01g0705200;CGSNL Gene Symbol=WSI18;CGSNL Gene Name=WATER STRESS INDUCIBLE PROTEIN 18;Oryzabase Gene Symbol Synonym(s)=OsLEA14%2C OsLEA14a%2C OsLEA14b%2C wsi18%2C pwsi18%2C OsLEA14/WSI18;Oryzabase Gene Name Synonym(s)=late embryogenesis abundant protein 14%2C water stress-induced 18;Note=Late embryogenesis abundant protein repeat containing protein.;Transcript_evidence=AK064074 (DDBJ%2C Best hit),AK073837 (DDBJ%2C Best hit);ORF_evidence=Q40709 (UniProt);InterPro=Late embryogenesis abundant protein%2C LEA-3 (IPR004238);NIAS_FLcDNA=001-125-H02,J033070H10;Oryzabase=9037;TENOR=Os01t0705200-01
Chr01	irgsp1_rep	five_prime_UTR	29234128	29234256	.	-	.	Parent=Os01t0705200-01
Chr01	irgsp1_rep	CDS	29234068	29234127	.	-	0	Parent=Os01t0705200-01
Chr01	irgsp1_rep	CDS	29233514	29233954	.	-	0	Parent=Os01t0705200-01
Chr01	irgsp1_rep	CDS	29233269	29233415	.	-	0	Parent=Os01t0705200-01
Chr01	irgsp1_rep	three_prime_UTR	29233040	29233268	.	-	.	Parent=Os01t0705200-01
Chr01	irgsp1_rep	mRNA	29240068	29246825	.	-	.	ID=Os01t0705300-01;Name=Os01t0705300-01;Locus_id=Os01g0705300;Note=Similar to PDE225/PTAC7.;Transcript_evidence=AK102719 (DDBJ%2C Best hit);ORF_evidence=XP_002872105.1 (RefSeq);NIAS_FLcDNA=J033105F22;Expression=AK102719;TENOR=Os01t0705300-01;KEGG=Os01t0705300-01
Chr01	irgsp1_rep	five_prime_UTR	29246806	29246825	.	-	.	Parent=Os01t0705300-01
Chr01	irgsp1_rep	CDS	29246680	29246805	.	-	0	Parent=Os01t0705300-01
Chr01	irgsp1_rep	CDS	29246497	29246589	.	-	0	Parent=Os01t0705300-01
Chr01	irgsp1_rep	CDS	29244141	29244473	.	-	0	Parent=Os01t0705300-01
Chr01	irgsp1_rep	three_prime_UTR	29244122	29244140	.	-	.	Parent=Os01t0705300-01
Chr01	irgsp1_rep	three_prime_UTR	29240068	29240619	.	-	.	Parent=Os01t0705300-01
Chr01	irgsp1_rep	mRNA	29244159	29246823	.	-	.	ID=Os01t0705300-02;Name=Os01t0705300-02;Locus_id=Os01g0705300;Note=Similar to predicted protein.;Transcript_evidence=AK103903 (DDBJ%2C Best hit);ORF_evidence=XP_002872105.1 (RefSeq);NIAS_FLcDNA=J033150L19;Expression=AK103903;TENOR=Os01t0705300-02;KEGG=Os01t0705300-02
Chr01	irgsp1_rep	five_prime_UTR	29246680	29246823	.	-	.	Parent=Os01t0705300-02
Chr01	irgsp1_rep	five_prime_UTR	29244495	29246580	.	-	.	Parent=Os01t0705300-02
Chr01	irgsp1_rep	CDS	29244159	29244494	.	-	0	Parent=Os01t0705300-02
Chr01	irgsp1_rep	mRNA	29242883	29243890	.	+	.	ID=Os01t0705400-00;Name=Os01t0705400-00;Locus_id=Os01g0705400;Note=Hypothetical conserved gene.;Transcript_evidence=AK336128 (DDBJ);ORF_evidence=A2ZX08 (UniProt);TENOR=Os01t0705400-00;KEGG=Os01t0705400-00
Chr01	irgsp1_rep	five_prime_UTR	29242883	29242930	.	+	.	Parent=Os01t0705400-00
Chr01	irgsp1_rep	CDS	29242931	29242994	.	+	0	Parent=Os01t0705400-00
Chr01	irgsp1_rep	CDS	29243080	29243132	.	+	2	Parent=Os01t0705400-00
Chr01	irgsp1_rep	CDS	29243475	29243582	.	+	0	Parent=Os01t0705400-00
Chr01	irgsp1_rep	three_prime_UTR	29243583	29243890	.	+	.	Parent=Os01t0705400-00
Chr01	irgsp1_rep	mRNA	29247022	29250112	.	+	.	ID=Os01t0705500-01;Name=Os01t0705500-01;Locus_id=Os01g0705500;Note=Similar to fiber protein Fb11.;Transcript_evidence=AK063120 (DDBJ%2C Best hit);ORF_evidence=NP_001151960.1 (RefSeq);NIAS_FLcDNA=001-111-E06;Expression=AK063120;TENOR=Os01t0705500-01;KEGG=Os01t0705500-01
Chr01	irgsp1_rep	five_prime_UTR	29247022	29247068	.	+	.	Parent=Os01t0705500-01
Chr01	irgsp1_rep	CDS	29247069	29247147	.	+	0	Parent=Os01t0705500-01
Chr01	irgsp1_rep	CDS	29248931	29249013	.	+	2	Parent=Os01t0705500-01
Chr01	irgsp1_rep	three_prime_UTR	29249014	29249014	.	+	.	Parent=Os01t0705500-01
Chr01	irgsp1_rep	three_prime_UTR	29249803	29250112	.	+	.	Parent=Os01t0705500-01
Chr01	irgsp1_rep	mRNA	29271158	29273175	.	+	.	ID=Os01t0705700-01;Name=Os01t0705700-01;Locus_id=Os01g0705700;Oryzabase Gene Symbol Synonym(s)=OsICE1%2C ICE1%2C OsbHLH010%2C bHLH010%2C OsMYL1%2C MYL1%2C bHLH116%2C OsMYC3%2C MYC3;Oryzabase Gene Name Synonym(s)=inducer of CBF expression 1%2C basic helix-loop-helix protein 010%2C OsMYC2-like protein 1%2C MYC2-like protein 1%2C Myelocytomatosis oncogene transcription factor 3;Note=Similar to Transcription factor ICE1 (Inducer of CBF expression 1) (Basic helix- loop-helix protein 116) (bHLH116) (AtbHLH116).;Transcript_evidence=AK064946 (DDBJ%2C Best hit);ORF_evidence=NP_001150726.1 (RefSeq);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J013000P16;Oryzabase=11371;Expression=AK064946;TENOR=Os01t0705700-01;KEGG=Os01t0705700-01
Chr01	irgsp1_rep	five_prime_UTR	29271158	29271456	.	+	.	Parent=Os01t0705700-01
Chr01	irgsp1_rep	CDS	29271457	29272285	.	+	0	Parent=Os01t0705700-01
Chr01	irgsp1_rep	CDS	29272325	29272878	.	+	2	Parent=Os01t0705700-01
Chr01	irgsp1_rep	three_prime_UTR	29272879	29273175	.	+	.	Parent=Os01t0705700-01
Chr01	irgsp1_rep	mRNA	29271397	29272886	.	-	.	ID=Os01t0705750-00;Name=Os01t0705750-00;Locus_id=Os01g0705750;Note=Hypothetical protein.;Transcript_evidence=tplb0026g06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0705750-00
Chr01	irgsp1_rep	five_prime_UTR	29272885	29272886	.	-	.	Parent=Os01t0705750-00
Chr01	irgsp1_rep	CDS	29272201	29272884	.	-	0	Parent=Os01t0705750-00
Chr01	irgsp1_rep	three_prime_UTR	29271397	29272200	.	-	.	Parent=Os01t0705750-00
Chr01	irgsp1_rep	mRNA	29277360	29277866	.	-	.	ID=Os01t0705800-01;Name=Os01t0705800-01;Locus_id=Os01g0705800;Note=Conserved hypothetical protein.;Transcript_evidence=AK106968 (DDBJ%2C Best hit);ORF_evidence=Q851I8 (UniProt);NIAS_FLcDNA=002-119-G01;TENOR=Os01t0705800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	29277468	29277866	.	-	0	Parent=Os01t0705800-01
Chr01	irgsp1_rep	three_prime_UTR	29277360	29277467	.	-	.	Parent=Os01t0705800-01
Chr01	irgsp1_rep	mRNA	29280126	29282898	.	-	.	ID=Os01t0706000-01;Name=Os01t0706000-01;Locus_id=Os01g0706000;Note=Similar to RNA polymerase II transcriptional coactivator KELP.;Transcript_evidence=AK059936 (DDBJ%2C Best hit);ORF_evidence=NP_192830.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: transcription coactivator activity (GO:0003713),Molecular Function: binding (GO:0005488);InterPro=Transcriptional coactivator p15 (IPR003173),ssDNA-binding transcriptional regulator (IPR009044),DEK%2C C-terminal (IPR014876),RNA polymerase II transcriptional coactivator KELP (IPR017415);NIAS_FLcDNA=006-210-D10;Expression=AK059936;TENOR=Os01t0706000-01;KEGG=Os01t0706000-01
Chr01	irgsp1_rep	five_prime_UTR	29282802	29282898	.	-	.	Parent=Os01t0706000-01
Chr01	irgsp1_rep	CDS	29282445	29282801	.	-	0	Parent=Os01t0706000-01
Chr01	irgsp1_rep	CDS	29282250	29282352	.	-	0	Parent=Os01t0706000-01
Chr01	irgsp1_rep	CDS	29280615	29280709	.	-	2	Parent=Os01t0706000-01
Chr01	irgsp1_rep	three_prime_UTR	29280126	29280614	.	-	.	Parent=Os01t0706000-01
Chr01	irgsp1_rep	mRNA	29280319	29282873	.	-	.	ID=Os01t0706000-02;Name=Os01t0706000-02;Locus_id=Os01g0706000;Note=Similar to RNA polymerase II transcriptional coactivator KELP.;Transcript_evidence=AK104192 (DDBJ%2C Best hit);ORF_evidence=NP_192830.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: transcription coactivator activity (GO:0003713),Molecular Function: binding (GO:0005488);InterPro=Transcriptional coactivator p15 (IPR003173),ssDNA-binding transcriptional regulator (IPR009044),DEK%2C C-terminal (IPR014876),RNA polymerase II transcriptional coactivator KELP (IPR017415);NIAS_FLcDNA=006-303-D08;Expression=AK104192;TENOR=Os01t0706000-02;KEGG=Os01t0706000-02
Chr01	irgsp1_rep	five_prime_UTR	29282802	29282873	.	-	.	Parent=Os01t0706000-02
Chr01	irgsp1_rep	CDS	29282445	29282801	.	-	0	Parent=Os01t0706000-02
Chr01	irgsp1_rep	CDS	29282250	29282352	.	-	0	Parent=Os01t0706000-02
Chr01	irgsp1_rep	CDS	29280615	29280709	.	-	2	Parent=Os01t0706000-02
Chr01	irgsp1_rep	three_prime_UTR	29280319	29280614	.	-	.	Parent=Os01t0706000-02
Chr01	irgsp1_rep	mRNA	29280244	29282819	.	-	.	ID=Os01t0706000-03;Name=Os01t0706000-03;Locus_id=Os01g0706000;Note=Similar to RNA polymerase II transcriptional coactivator KELP.;Transcript_evidence=AK070545 (DDBJ%2C Best hit);ORF_evidence=NP_192830.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: transcription coactivator activity (GO:0003713),Molecular Function: binding (GO:0005488);InterPro=Transcriptional coactivator p15 (IPR003173),ssDNA-binding transcriptional regulator (IPR009044),DEK%2C C-terminal (IPR014876),RNA polymerase II transcriptional coactivator KELP (IPR017415);NIAS_FLcDNA=J023055M24;Expression=AK070545;TENOR=Os01t0706000-03;KEGG=Os01t0706000-03
Chr01	irgsp1_rep	five_prime_UTR	29282802	29282819	.	-	.	Parent=Os01t0706000-03
Chr01	irgsp1_rep	CDS	29282445	29282801	.	-	0	Parent=Os01t0706000-03
Chr01	irgsp1_rep	CDS	29282250	29282352	.	-	0	Parent=Os01t0706000-03
Chr01	irgsp1_rep	CDS	29280615	29280709	.	-	2	Parent=Os01t0706000-03
Chr01	irgsp1_rep	three_prime_UTR	29280244	29280614	.	-	.	Parent=Os01t0706000-03
Chr01	irgsp1_rep	mRNA	29285414	29288695	.	+	.	ID=Os01t0706100-01;Name=Os01t0706100-01;Locus_id=Os01g0706100;Note=Conserved hypothetical protein.;Transcript_evidence=AK072799 (DDBJ%2C Best hit);ORF_evidence=B8A8B9 (UniProt);NIAS_FLcDNA=J023136E17;Expression=AK072799;TENOR=Os01t0706100-01;KEGG=Os01t0706100-01
Chr01	irgsp1_rep	five_prime_UTR	29285414	29285556	.	+	.	Parent=Os01t0706100-01
Chr01	irgsp1_rep	CDS	29285557	29286007	.	+	0	Parent=Os01t0706100-01
Chr01	irgsp1_rep	CDS	29286117	29286832	.	+	2	Parent=Os01t0706100-01
Chr01	irgsp1_rep	CDS	29286905	29287252	.	+	0	Parent=Os01t0706100-01
Chr01	irgsp1_rep	three_prime_UTR	29287253	29287253	.	+	.	Parent=Os01t0706100-01
Chr01	irgsp1_rep	three_prime_UTR	29288319	29288695	.	+	.	Parent=Os01t0706100-01
Chr01	irgsp1_rep	mRNA	29290139	29295684	.	+	.	ID=Os01t0706200-01;Name=Os01t0706200-01;Locus_id=Os01g0706200;Note=Cullin%2C N-terminal domain containing protein.;Transcript_evidence=AK241711 (DDBJ%2C Best hit);ORF_evidence=B9EZ23 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Cellular Component: cullin-RING ubiquitin ligase complex (GO:0031461),Molecular Function: ubiquitin protein ligase binding (GO:0031625);InterPro=Cullin%2C N-terminal (IPR001373),Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=J065197E23;TENOR=Os01t0706200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	29290139	29290292	.	+	.	Parent=Os01t0706200-01
Chr01	irgsp1_rep	CDS	29290293	29290441	.	+	0	Parent=Os01t0706200-01
Chr01	irgsp1_rep	CDS	29290541	29290637	.	+	1	Parent=Os01t0706200-01
Chr01	irgsp1_rep	CDS	29290875	29291060	.	+	0	Parent=Os01t0706200-01
Chr01	irgsp1_rep	CDS	29291150	29291195	.	+	0	Parent=Os01t0706200-01
Chr01	irgsp1_rep	CDS	29291289	29291293	.	+	2	Parent=Os01t0706200-01
Chr01	irgsp1_rep	three_prime_UTR	29291294	29291495	.	+	.	Parent=Os01t0706200-01
Chr01	irgsp1_rep	three_prime_UTR	29291576	29291653	.	+	.	Parent=Os01t0706200-01
Chr01	irgsp1_rep	three_prime_UTR	29291797	29291907	.	+	.	Parent=Os01t0706200-01
Chr01	irgsp1_rep	three_prime_UTR	29291990	29292069	.	+	.	Parent=Os01t0706200-01
Chr01	irgsp1_rep	three_prime_UTR	29292155	29292205	.	+	.	Parent=Os01t0706200-01
Chr01	irgsp1_rep	three_prime_UTR	29293220	29293463	.	+	.	Parent=Os01t0706200-01
Chr01	irgsp1_rep	three_prime_UTR	29293584	29293733	.	+	.	Parent=Os01t0706200-01
Chr01	irgsp1_rep	three_prime_UTR	29293825	29293880	.	+	.	Parent=Os01t0706200-01
Chr01	irgsp1_rep	three_prime_UTR	29293982	29294249	.	+	.	Parent=Os01t0706200-01
Chr01	irgsp1_rep	three_prime_UTR	29294343	29294507	.	+	.	Parent=Os01t0706200-01
Chr01	irgsp1_rep	three_prime_UTR	29294597	29294815	.	+	.	Parent=Os01t0706200-01
Chr01	irgsp1_rep	three_prime_UTR	29294899	29295078	.	+	.	Parent=Os01t0706200-01
Chr01	irgsp1_rep	three_prime_UTR	29295347	29295684	.	+	.	Parent=Os01t0706200-01
Chr01	irgsp1_rep	mRNA	29298041	29299496	.	+	.	ID=Os01t0706266-00;Name=Os01t0706266-00;Locus_id=Os01g0706266;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0024d06 (Wheat FLcDNA);ORF_evidence=Q8S0P4 (UniProt);TENOR=Os01t0706266-00
Chr01	irgsp1_rep	CDS	29298041	29298757	.	+	0	Parent=Os01t0706266-00
Chr01	irgsp1_rep	CDS	29298837	29298980	.	+	0	Parent=Os01t0706266-00
Chr01	irgsp1_rep	CDS	29299091	29299327	.	+	0	Parent=Os01t0706266-00
Chr01	irgsp1_rep	three_prime_UTR	29299328	29299496	.	+	.	Parent=Os01t0706266-00
Chr01	irgsp1_rep	mRNA	29298120	29299495	.	-	.	ID=Os01t0706332-00;Name=Os01t0706332-00;Locus_id=Os01g0706332;Note=Hypothetical protein.;Transcript_evidence=tplb0028o22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0706332-00
Chr01	irgsp1_rep	five_prime_UTR	29299242	29299495	.	-	.	Parent=Os01t0706332-00
Chr01	irgsp1_rep	CDS	29299100	29299241	.	-	0	Parent=Os01t0706332-00
Chr01	irgsp1_rep	CDS	29298854	29298993	.	-	2	Parent=Os01t0706332-00
Chr01	irgsp1_rep	CDS	29298340	29298768	.	-	0	Parent=Os01t0706332-00
Chr01	irgsp1_rep	three_prime_UTR	29298120	29298339	.	-	.	Parent=Os01t0706332-00
Chr01	irgsp1_rep	mRNA	29306448	29312511	.	+	.	ID=Os01t0706400-01;Name=Os01t0706400-01;Locus_id=Os01g0706400;Note=Protein of unknown function DUF292%2C eukaryotic domain containing protein.;Transcript_evidence=AK066981 (DDBJ%2C Best hit),AK065826 (DDBJ%2C Best hit);ORF_evidence=A2WU94 (UniProt);InterPro=Domain of unknown function DUF292%2C eukaryotic (IPR005061);NIAS_FLcDNA=J013092D23,J013036F01;TENOR=Os01t0706400-01
Chr01	irgsp1_rep	five_prime_UTR	29306448	29306712	.	+	.	Parent=Os01t0706400-01
Chr01	irgsp1_rep	CDS	29306713	29306774	.	+	0	Parent=Os01t0706400-01
Chr01	irgsp1_rep	CDS	29306905	29307037	.	+	1	Parent=Os01t0706400-01
Chr01	irgsp1_rep	CDS	29307800	29307903	.	+	0	Parent=Os01t0706400-01
Chr01	irgsp1_rep	CDS	29308944	29309115	.	+	1	Parent=Os01t0706400-01
Chr01	irgsp1_rep	CDS	29309231	29309371	.	+	0	Parent=Os01t0706400-01
Chr01	irgsp1_rep	CDS	29309450	29309798	.	+	0	Parent=Os01t0706400-01
Chr01	irgsp1_rep	CDS	29309876	29312220	.	+	2	Parent=Os01t0706400-01
Chr01	irgsp1_rep	three_prime_UTR	29312221	29312511	.	+	.	Parent=Os01t0706400-01
Chr01	irgsp1_rep	mRNA	29307013	29312511	.	+	.	ID=Os01t0706400-02;Name=Os01t0706400-02;Locus_id=Os01g0706400;Note=Hypothetical conserved gene.;Transcript_evidence=AK068355 (DDBJ%2C Best hit);ORF_evidence=Q5N8E9 (UniProt);InterPro=Domain of unknown function DUF292%2C eukaryotic (IPR005061);NIAS_FLcDNA=J013138N17;Expression=AK068355;TENOR=Os01t0706400-02;KEGG=Os01t0706400-02
Chr01	irgsp1_rep	five_prime_UTR	29307013	29307037	.	+	.	Parent=Os01t0706400-02
Chr01	irgsp1_rep	five_prime_UTR	29307800	29307829	.	+	.	Parent=Os01t0706400-02
Chr01	irgsp1_rep	CDS	29307830	29307903	.	+	0	Parent=Os01t0706400-02
Chr01	irgsp1_rep	CDS	29308944	29309115	.	+	1	Parent=Os01t0706400-02
Chr01	irgsp1_rep	CDS	29309231	29309371	.	+	0	Parent=Os01t0706400-02
Chr01	irgsp1_rep	CDS	29309450	29309798	.	+	0	Parent=Os01t0706400-02
Chr01	irgsp1_rep	CDS	29309876	29311763	.	+	2	Parent=Os01t0706400-02
Chr01	irgsp1_rep	CDS	29312111	29312174	.	+	1	Parent=Os01t0706400-02
Chr01	irgsp1_rep	three_prime_UTR	29312175	29312511	.	+	.	Parent=Os01t0706400-02
Chr01	irgsp1_rep	mRNA	29309512	29311950	.	+	.	ID=Os01t0706400-03;Name=Os01t0706400-03;Locus_id=Os01g0706400;Note=Hypothetical conserved gene.;Transcript_evidence=AK070004 (DDBJ%2C Best hit);ORF_evidence=B9EZ25 (UniProt);NIAS_FLcDNA=J023036G06;Expression=AK070004;TENOR=Os01t0706400-03;KEGG=Os01t0706400-03
Chr01	irgsp1_rep	five_prime_UTR	29309512	29309512	.	+	.	Parent=Os01t0706400-03
Chr01	irgsp1_rep	CDS	29309513	29309798	.	+	0	Parent=Os01t0706400-03
Chr01	irgsp1_rep	CDS	29309876	29311950	.	+	2	Parent=Os01t0706400-03
Chr01	irgsp1_rep	mRNA	29314194	29316850	.	+	.	ID=Os01t0706500-00;Name=Os01t0706500-00;Locus_id=Os01g0706500;Note=Ribosomal protein L28e domain containing protein.;Transcript_evidence=CT837912 (DDBJ%2C Best hit);ORF_evidence=A6MZK4 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L28e (IPR002672);TENOR=Os01t0706500-00;KEGG=Os01t0706500-00
Chr01	irgsp1_rep	five_prime_UTR	29314194	29314226	.	+	.	Parent=Os01t0706500-00
Chr01	irgsp1_rep	five_prime_UTR	29315368	29315377	.	+	.	Parent=Os01t0706500-00
Chr01	irgsp1_rep	CDS	29315378	29315525	.	+	0	Parent=Os01t0706500-00
Chr01	irgsp1_rep	CDS	29315625	29315791	.	+	2	Parent=Os01t0706500-00
Chr01	irgsp1_rep	CDS	29316490	29316612	.	+	0	Parent=Os01t0706500-00
Chr01	irgsp1_rep	three_prime_UTR	29316613	29316850	.	+	.	Parent=Os01t0706500-00
Chr01	irgsp1_rep	mRNA	29317540	29318156	.	+	.	ID=Os01t0706600-00;Name=Os01t0706600-00;Locus_id=Os01g0706600;Note=Conserved hypothetical protein.;Transcript_evidence=CT835009 (DDBJ%2C Best hit);ORF_evidence=NP_001172531.1 (RefSeq);TENOR=Os01t0706600-00;KEGG=Os01t0706600-00
Chr01	irgsp1_rep	five_prime_UTR	29317540	29317558	.	+	.	Parent=Os01t0706600-00
Chr01	irgsp1_rep	CDS	29317559	29317816	.	+	0	Parent=Os01t0706600-00
Chr01	irgsp1_rep	three_prime_UTR	29317817	29318156	.	+	.	Parent=Os01t0706600-00
Chr01	irgsp1_rep	mRNA	29318195	29322559	.	-	.	ID=Os01t0706700-01;Name=Os01t0706700-01;Locus_id=Os01g0706700;Note=Protein of unknown function DUF590 family protein.;Transcript_evidence=AK072738 (DDBJ%2C Best hit);ORF_evidence=NP_001170473.1 (RefSeq);InterPro=Anoctamin/TMEM 16 (IPR007632);NIAS_FLcDNA=J023138H12;Expression=AK072738;TENOR=Os01t0706700-01;KEGG=Os01t0706700-01
Chr01	irgsp1_rep	five_prime_UTR	29322429	29322559	.	-	.	Parent=Os01t0706700-01
Chr01	irgsp1_rep	CDS	29322219	29322428	.	-	0	Parent=Os01t0706700-01
Chr01	irgsp1_rep	CDS	29321965	29322034	.	-	0	Parent=Os01t0706700-01
Chr01	irgsp1_rep	CDS	29321768	29321883	.	-	2	Parent=Os01t0706700-01
Chr01	irgsp1_rep	CDS	29321169	29321295	.	-	0	Parent=Os01t0706700-01
Chr01	irgsp1_rep	CDS	29321006	29321106	.	-	2	Parent=Os01t0706700-01
Chr01	irgsp1_rep	CDS	29320796	29320887	.	-	0	Parent=Os01t0706700-01
Chr01	irgsp1_rep	CDS	29320608	29320712	.	-	1	Parent=Os01t0706700-01
Chr01	irgsp1_rep	CDS	29320226	29320492	.	-	1	Parent=Os01t0706700-01
Chr01	irgsp1_rep	CDS	29319913	29320045	.	-	1	Parent=Os01t0706700-01
Chr01	irgsp1_rep	CDS	29319728	29319842	.	-	0	Parent=Os01t0706700-01
Chr01	irgsp1_rep	CDS	29319576	29319645	.	-	2	Parent=Os01t0706700-01
Chr01	irgsp1_rep	CDS	29319360	29319490	.	-	1	Parent=Os01t0706700-01
Chr01	irgsp1_rep	CDS	29319192	29319274	.	-	2	Parent=Os01t0706700-01
Chr01	irgsp1_rep	CDS	29318951	29319058	.	-	0	Parent=Os01t0706700-01
Chr01	irgsp1_rep	CDS	29318701	29318859	.	-	0	Parent=Os01t0706700-01
Chr01	irgsp1_rep	CDS	29318492	29318602	.	-	0	Parent=Os01t0706700-01
Chr01	irgsp1_rep	three_prime_UTR	29318195	29318491	.	-	.	Parent=Os01t0706700-01
Chr01	irgsp1_rep	mRNA	29323176	29323982	.	-	.	ID=Os01t0706800-00;Name=Os01t0706800-00;Locus_id=Os01g0706800;Note=Similar to agglutinin.;Transcript_evidence=EU971654 (DDBJ);ORF_evidence=B6T6H0 (UniProt);InterPro=Mannose-binding lectin (IPR001229);TENOR=Os01t0706800-00;KEGG=Os01t0706800-00
Chr01	irgsp1_rep	CDS	29323176	29323982	.	-	0	Parent=Os01t0706800-00
Chr01	irgsp1_rep	mRNA	29326816	29327360	.	+	.	ID=Os01t0706850-00;Name=Os01t0706850-00;Locus_id=Os01g0706850;Note=Non-protein coding transcript.;Transcript_evidence=FP096644 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0706850-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	exon	29326816	29327360	.	+	.	Parent=Os01t0706850-00
Chr01	irgsp1_rep	mRNA	29327583	29334792	.	-	.	ID=Os01t0706900-01;Name=Os01t0706900-01;Locus_id=Os01g0706900;CGSNL Gene Symbol=AH9;CGSNL Gene Name=AMIDOHYDROLASE 9;Oryzabase Gene Symbol Synonym(s)=OsAH9;Oryzabase Gene Name Synonym(s)=amidohydrolase 9;Note=Similar to Auxin amidohydrolase.;Transcript_evidence=AK105646 (DDBJ%2C Best hit);ORF_evidence=Q5N8F2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Peptidase M20 (IPR002933),Peptidase M20%2C dimerisation (IPR011650),Amidohydrolase (IPR017439);NIAS_FLcDNA=001-200-F07;Oryzabase=23123;Expression=AK105646;TENOR=Os01t0706900-01;KEGG=Os01t0706900-01
Chr01	irgsp1_rep	five_prime_UTR	29334714	29334792	.	-	.	Parent=Os01t0706900-01
Chr01	irgsp1_rep	CDS	29334321	29334713	.	-	0	Parent=Os01t0706900-01
Chr01	irgsp1_rep	CDS	29332721	29332846	.	-	0	Parent=Os01t0706900-01
Chr01	irgsp1_rep	CDS	29327910	29328761	.	-	0	Parent=Os01t0706900-01
Chr01	irgsp1_rep	three_prime_UTR	29327583	29327909	.	-	.	Parent=Os01t0706900-01
Chr01	irgsp1_rep	mRNA	29364593	29367878	.	+	.	ID=Os01t0707300-01;Name=Os01t0707300-01;Locus_id=Os01g0707300;Note=Similar to Vesicle transport v-SNARE 13 (AtVTI13) (Vesicle transport v-SNARE protein VTI13) (Vesicle soluble NSF attachment protein receptor 13).;Transcript_evidence=AK104463 (DDBJ%2C Best hit),AK059962 (DDBJ%2C Best hit);ORF_evidence=NP_001147199.1 (RefSeq);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: membrane (GO:0016020);InterPro=Vesicle transport v-SNARE%2C N-terminal (IPR007705),t-SNARE (IPR010989);NIAS_FLcDNA=006-301-C03,006-211-F05;TENOR=Os01t0707300-01
Chr01	irgsp1_rep	five_prime_UTR	29364593	29364803	.	+	.	Parent=Os01t0707300-01
Chr01	irgsp1_rep	CDS	29364804	29364897	.	+	0	Parent=Os01t0707300-01
Chr01	irgsp1_rep	CDS	29365008	29365066	.	+	2	Parent=Os01t0707300-01
Chr01	irgsp1_rep	CDS	29365302	29365490	.	+	0	Parent=Os01t0707300-01
Chr01	irgsp1_rep	CDS	29366681	29366851	.	+	0	Parent=Os01t0707300-01
Chr01	irgsp1_rep	CDS	29367511	29367663	.	+	0	Parent=Os01t0707300-01
Chr01	irgsp1_rep	three_prime_UTR	29367664	29367878	.	+	.	Parent=Os01t0707300-01
Chr01	irgsp1_rep	mRNA	29364595	29367897	.	+	.	ID=Os01t0707300-02;Name=Os01t0707300-02;Locus_id=Os01g0707300;Note=Similar to vesicle transport v-SNARE 13.;Transcript_evidence=AK072746 (DDBJ%2C Best hit);ORF_evidence=NP_001147199.1 (RefSeq);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: membrane (GO:0016020);InterPro=Vesicle transport v-SNARE%2C N-terminal (IPR007705),t-SNARE (IPR010989);NIAS_FLcDNA=J023135J09;Expression=AK072746;TENOR=Os01t0707300-02;KEGG=Os01t0707300-02
Chr01	irgsp1_rep	five_prime_UTR	29364595	29364803	.	+	.	Parent=Os01t0707300-02
Chr01	irgsp1_rep	CDS	29364804	29364897	.	+	0	Parent=Os01t0707300-02
Chr01	irgsp1_rep	CDS	29365008	29365066	.	+	2	Parent=Os01t0707300-02
Chr01	irgsp1_rep	CDS	29365302	29365526	.	+	0	Parent=Os01t0707300-02
Chr01	irgsp1_rep	three_prime_UTR	29365527	29366851	.	+	.	Parent=Os01t0707300-02
Chr01	irgsp1_rep	three_prime_UTR	29367511	29367897	.	+	.	Parent=Os01t0707300-02
Chr01	irgsp1_rep	mRNA	29382708	29385646	.	-	.	ID=Os01t0707500-01;Name=Os01t0707500-01;Locus_id=Os01g0707500;Oryzabase Gene Symbol Synonym(s)=OsbHLH118;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 118;Note=Similar to Transcription factor LAX PANICLE.;Transcript_evidence=AK100208 (DDBJ%2C Best hit);ORF_evidence=A2WUA1 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J023042H10;Oryzabase=15398;Expression=AK100208;TENOR=Os01t0707500-01;KEGG=Os01t0707500-01
Chr01	irgsp1_rep	five_prime_UTR	29385396	29385646	.	-	.	Parent=Os01t0707500-01
Chr01	irgsp1_rep	five_prime_UTR	29384985	29385181	.	-	.	Parent=Os01t0707500-01
Chr01	irgsp1_rep	five_prime_UTR	29384263	29384353	.	-	.	Parent=Os01t0707500-01
Chr01	irgsp1_rep	CDS	29383081	29384262	.	-	0	Parent=Os01t0707500-01
Chr01	irgsp1_rep	three_prime_UTR	29382708	29383080	.	-	.	Parent=Os01t0707500-01
Chr01	irgsp1_rep	mRNA	29382994	29385646	.	-	.	ID=Os01t0707500-02;Name=Os01t0707500-02;Locus_id=Os01g0707500;Oryzabase Gene Symbol Synonym(s)=OsbHLH118;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 118;Note=Similar to Transcription factor LAX PANICLE.;Transcript_evidence=AK106119 (DDBJ%2C Best hit);ORF_evidence=A2WUA1 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=001-207-E08;Oryzabase=15398;Expression=AK106119;TENOR=Os01t0707500-02;KEGG=Os01t0707500-02
Chr01	irgsp1_rep	five_prime_UTR	29385386	29385646	.	-	.	Parent=Os01t0707500-02
Chr01	irgsp1_rep	five_prime_UTR	29384985	29385181	.	-	.	Parent=Os01t0707500-02
Chr01	irgsp1_rep	five_prime_UTR	29384263	29384353	.	-	.	Parent=Os01t0707500-02
Chr01	irgsp1_rep	CDS	29383081	29384262	.	-	0	Parent=Os01t0707500-02
Chr01	irgsp1_rep	three_prime_UTR	29382994	29383080	.	-	.	Parent=Os01t0707500-02
Chr01	irgsp1_rep	mRNA	29384427	29385646	.	-	.	ID=Os01t0707500-03;Name=Os01t0707500-03;Locus_id=Os01g0707500;Oryzabase Gene Symbol Synonym(s)=OsbHLH118;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 118;Note=Non-protein coding transcript.;Transcript_evidence=AK109307 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-188-E12;Oryzabase=15398;TENOR=Os01t0707500-03
Chr01	irgsp1_rep	exon	29385386	29385646	.	-	.	Parent=Os01t0707500-03
Chr01	irgsp1_rep	exon	29384427	29385181	.	-	.	Parent=Os01t0707500-03
Chr01	irgsp1_rep	mRNA	29405623	29411262	.	+	.	ID=Os01t0708000-00;Name=Os01t0708000-00;Locus_id=Os01g0708000;Note=Similar to Single myb histone 4.;Transcript_evidence=AJ495797 (DDBJ%2C Best hit);ORF_evidence=A6MZD9 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Histone H1/H5 (IPR005818),Homeodomain-like (IPR009057),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);Expression=AJ495797;TENOR=Os01t0708000-00;KEGG=Os01t0708000-00
Chr01	irgsp1_rep	five_prime_UTR	29405623	29405722	.	+	.	Parent=Os01t0708000-00
Chr01	irgsp1_rep	CDS	29405723	29405872	.	+	0	Parent=Os01t0708000-00
Chr01	irgsp1_rep	CDS	29408464	29408663	.	+	0	Parent=Os01t0708000-00
Chr01	irgsp1_rep	CDS	29409155	29409233	.	+	1	Parent=Os01t0708000-00
Chr01	irgsp1_rep	CDS	29409781	29409864	.	+	0	Parent=Os01t0708000-00
Chr01	irgsp1_rep	CDS	29410596	29410890	.	+	0	Parent=Os01t0708000-00
Chr01	irgsp1_rep	CDS	29410971	29411077	.	+	2	Parent=Os01t0708000-00
Chr01	irgsp1_rep	three_prime_UTR	29411078	29411262	.	+	.	Parent=Os01t0708000-00
Chr01	irgsp1_rep	mRNA	29412196	29413954	.	+	.	ID=Os01t0708100-01;Name=Os01t0708100-01;Locus_id=Os01g0708100;Note=Similar to N-myristoyl transferase (EC 2.3.1.97).;Transcript_evidence=AK101457 (DDBJ%2C Best hit);ORF_evidence=A2WUA4 (UniProt);GO=Biological Process: N-terminal protein myristoylation (GO:0006499),Molecular Function: glycylpeptide N-tetradecanoyltransferase activity (GO:0004379);InterPro=Myristoyl-CoA:protein N-myristoyltransferase (IPR000903),Acyl-CoA N-acyltransferase (IPR016181),Myristoyl-CoA:protein N-myristoyltransferase%2C N-terminal (IPR022676),Myristoyl-CoA:protein N-myristoyltransferase%2C C-terminal (IPR022677),Myristoyl-CoA:protein N-myristoyltransferase%2C conserved site (IPR022678);NIAS_FLcDNA=J033040C05;Expression=AK101457;TENOR=Os01t0708100-01;KEGG=Os01t0708100-01 (EC:2.3.1.97)
Chr01	irgsp1_rep	five_prime_UTR	29412196	29412287	.	+	.	Parent=Os01t0708100-01
Chr01	irgsp1_rep	CDS	29412288	29413601	.	+	0	Parent=Os01t0708100-01
Chr01	irgsp1_rep	three_prime_UTR	29413602	29413954	.	+	.	Parent=Os01t0708100-01
Chr01	irgsp1_rep	mRNA	29412517	29414019	.	-	.	ID=Os01t0708201-00;Name=Os01t0708201-00;Locus_id=Os01g0708201;Note=Hypothetical gene.;Transcript_evidence=BT024151 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0708201-00;KEGG=Os01t0708201-00
Chr01	irgsp1_rep	five_prime_UTR	29413724	29414019	.	-	.	Parent=Os01t0708201-00
Chr01	irgsp1_rep	five_prime_UTR	29413064	29413658	.	-	.	Parent=Os01t0708201-00
Chr01	irgsp1_rep	CDS	29412677	29413063	.	-	0	Parent=Os01t0708201-00
Chr01	irgsp1_rep	three_prime_UTR	29412517	29412676	.	-	.	Parent=Os01t0708201-00
Chr01	irgsp1_rep	mRNA	29423549	29427813	.	+	.	ID=Os01t0708300-01;Name=Os01t0708300-01;Locus_id=Os01g0708300;Note=Protein of unknown function DUF803 domain containing protein.;Transcript_evidence=AK073555 (DDBJ%2C Best hit);ORF_evidence=B9EZ32 (UniProt);InterPro=Protein of unknown function DUF803 (IPR008521);NIAS_FLcDNA=J033046A07;TENOR=Os01t0708300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	29423549	29423746	.	+	.	Parent=Os01t0708300-01
Chr01	irgsp1_rep	CDS	29423747	29423857	.	+	0	Parent=Os01t0708300-01
Chr01	irgsp1_rep	CDS	29423956	29424054	.	+	0	Parent=Os01t0708300-01
Chr01	irgsp1_rep	CDS	29424148	29424277	.	+	0	Parent=Os01t0708300-01
Chr01	irgsp1_rep	CDS	29424416	29424508	.	+	2	Parent=Os01t0708300-01
Chr01	irgsp1_rep	CDS	29424909	29424955	.	+	2	Parent=Os01t0708300-01
Chr01	irgsp1_rep	three_prime_UTR	29424956	29424965	.	+	.	Parent=Os01t0708300-01
Chr01	irgsp1_rep	three_prime_UTR	29425042	29425100	.	+	.	Parent=Os01t0708300-01
Chr01	irgsp1_rep	three_prime_UTR	29425943	29426063	.	+	.	Parent=Os01t0708300-01
Chr01	irgsp1_rep	three_prime_UTR	29426926	29427074	.	+	.	Parent=Os01t0708300-01
Chr01	irgsp1_rep	three_prime_UTR	29427418	29427813	.	+	.	Parent=Os01t0708300-01
Chr01	irgsp1_rep	mRNA	29423634	29427479	.	+	.	ID=Os01t0708300-02;Name=Os01t0708300-02;Locus_id=Os01g0708300;Note=Similar to predicted protein.;Transcript_evidence=AK060040 (DDBJ%2C Best hit);ORF_evidence=B9EZ32 (UniProt);InterPro=Protein of unknown function DUF803 (IPR008521);NIAS_FLcDNA=006-304-C03;TENOR=Os01t0708300-02
Chr01	irgsp1_rep	five_prime_UTR	29423634	29423746	.	+	.	Parent=Os01t0708300-02
Chr01	irgsp1_rep	CDS	29423747	29423857	.	+	0	Parent=Os01t0708300-02
Chr01	irgsp1_rep	CDS	29423956	29424054	.	+	0	Parent=Os01t0708300-02
Chr01	irgsp1_rep	CDS	29424148	29424277	.	+	0	Parent=Os01t0708300-02
Chr01	irgsp1_rep	CDS	29424416	29424504	.	+	2	Parent=Os01t0708300-02
Chr01	irgsp1_rep	CDS	29424909	29424965	.	+	0	Parent=Os01t0708300-02
Chr01	irgsp1_rep	CDS	29425042	29425100	.	+	0	Parent=Os01t0708300-02
Chr01	irgsp1_rep	CDS	29425943	29426063	.	+	1	Parent=Os01t0708300-02
Chr01	irgsp1_rep	CDS	29426926	29427074	.	+	0	Parent=Os01t0708300-02
Chr01	irgsp1_rep	CDS	29427418	29427479	.	+	1	Parent=Os01t0708300-02
Chr01	irgsp1_rep	mRNA	29431941	29434694	.	-	.	ID=Os01t0708350-00;Name=Os01t0708350-00;Locus_id=Os01g0708350;Note=Non-protein coding transcript.;Transcript_evidence=tplb0035e01 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os01t0708350-00
Chr01	irgsp1_rep	exon	29434559	29434694	.	-	.	Parent=Os01t0708350-00
Chr01	irgsp1_rep	exon	29434357	29434480	.	-	.	Parent=Os01t0708350-00
Chr01	irgsp1_rep	exon	29433608	29434281	.	-	.	Parent=Os01t0708350-00
Chr01	irgsp1_rep	exon	29433403	29433507	.	-	.	Parent=Os01t0708350-00
Chr01	irgsp1_rep	exon	29432994	29433148	.	-	.	Parent=Os01t0708350-00
Chr01	irgsp1_rep	exon	29432793	29432909	.	-	.	Parent=Os01t0708350-00
Chr01	irgsp1_rep	exon	29431941	29432009	.	-	.	Parent=Os01t0708350-00
Chr01	irgsp1_rep	mRNA	29436121	29436450	.	+	.	ID=Os01t0708400-01;Name=Os01t0708400-01;Locus_id=Os01g0708400;Note=Non-protein coding transcript.;Transcript_evidence=AK242236 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J075178E14;TENOR=Os01t0708400-01
Chr01	irgsp1_rep	exon	29436121	29436450	.	+	.	Parent=Os01t0708400-01
Chr01	irgsp1_rep	mRNA	29437301	29439863	.	-	.	ID=Os01t0708500-01;Name=Os01t0708500-01;Locus_id=Os01g0708500;CGSNL Gene Symbol=LOGL1;CGSNL Gene Name=LONELY GUY LIKE PHOSPHORIBOHYDROLASE 1;Oryzabase Gene Symbol Synonym(s)=LOGL1;Oryzabase Gene Name Synonym(s)=LOG LIKE phosphoribohydrolase 1%2C LOG LIKE 1;Note=Similar to lysine decarboxylase-like protein.;Transcript_evidence=AK061091 (DDBJ%2C Best hit);ORF_evidence=NP_001148565.1 (RefSeq);InterPro=Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG (IPR005269);NIAS_FLcDNA=006-206-H04;Oryzabase=9846;Expression=AK061091;TENOR=Os01t0708500-01;KEGG=Os01t0708500-01
Chr01	irgsp1_rep	five_prime_UTR	29439749	29439863	.	-	.	Parent=Os01t0708500-01
Chr01	irgsp1_rep	CDS	29439611	29439748	.	-	0	Parent=Os01t0708500-01
Chr01	irgsp1_rep	CDS	29439384	29439481	.	-	0	Parent=Os01t0708500-01
Chr01	irgsp1_rep	CDS	29439252	29439282	.	-	1	Parent=Os01t0708500-01
Chr01	irgsp1_rep	CDS	29438245	29438344	.	-	0	Parent=Os01t0708500-01
Chr01	irgsp1_rep	CDS	29438074	29438144	.	-	2	Parent=Os01t0708500-01
Chr01	irgsp1_rep	CDS	29437841	29437984	.	-	0	Parent=Os01t0708500-01
Chr01	irgsp1_rep	CDS	29437634	29437723	.	-	0	Parent=Os01t0708500-01
Chr01	irgsp1_rep	three_prime_UTR	29437301	29437633	.	-	.	Parent=Os01t0708500-01
Chr01	irgsp1_rep	mRNA	29437410	29439777	.	-	.	ID=Os01t0708500-02;Name=Os01t0708500-02;Locus_id=Os01g0708500;CGSNL Gene Symbol=LOGL1;CGSNL Gene Name=LONELY GUY LIKE PHOSPHORIBOHYDROLASE 1;Oryzabase Gene Symbol Synonym(s)=LOGL1;Oryzabase Gene Name Synonym(s)=LOG LIKE phosphoribohydrolase 1%2C LOG LIKE 1;Note=Similar to lysine decarboxylase-like protein.;Transcript_evidence=AK099170 (DDBJ%2C Best hit);ORF_evidence=NP_001148565.1 (RefSeq);InterPro=Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG (IPR005269);NIAS_FLcDNA=J023088M05;Oryzabase=9846;Expression=AK099170;TENOR=Os01t0708500-02;KEGG=Os01t0708500-02
Chr01	irgsp1_rep	five_prime_UTR	29439749	29439777	.	-	.	Parent=Os01t0708500-02
Chr01	irgsp1_rep	CDS	29439611	29439748	.	-	0	Parent=Os01t0708500-02
Chr01	irgsp1_rep	CDS	29439384	29439481	.	-	0	Parent=Os01t0708500-02
Chr01	irgsp1_rep	CDS	29439252	29439282	.	-	1	Parent=Os01t0708500-02
Chr01	irgsp1_rep	CDS	29438245	29438344	.	-	0	Parent=Os01t0708500-02
Chr01	irgsp1_rep	CDS	29438074	29438144	.	-	2	Parent=Os01t0708500-02
Chr01	irgsp1_rep	CDS	29437841	29437984	.	-	0	Parent=Os01t0708500-02
Chr01	irgsp1_rep	CDS	29437634	29437723	.	-	0	Parent=Os01t0708500-02
Chr01	irgsp1_rep	three_prime_UTR	29437410	29437633	.	-	.	Parent=Os01t0708500-02
Chr01	irgsp1_rep	mRNA	29437410	29439551	.	-	.	ID=Os01t0708500-03;Name=Os01t0708500-03;Locus_id=Os01g0708500;CGSNL Gene Symbol=LOGL1;CGSNL Gene Name=LONELY GUY LIKE PHOSPHORIBOHYDROLASE 1;Oryzabase Gene Symbol Synonym(s)=LOGL1;Oryzabase Gene Name Synonym(s)=LOG LIKE phosphoribohydrolase 1%2C LOG LIKE 1;Note=Similar to lysine decarboxylase-like protein.;Transcript_evidence=AK060272 (DDBJ%2C Best hit);ORF_evidence=NP_001148565.1 (RefSeq);NIAS_FLcDNA=001-005-G03;Oryzabase=9846;Expression=AK060272;TENOR=Os01t0708500-03;KEGG=Os01t0708500-03
Chr01	irgsp1_rep	five_prime_UTR	29439551	29439551	.	-	.	Parent=Os01t0708500-03
Chr01	irgsp1_rep	CDS	29439320	29439550	.	-	0	Parent=Os01t0708500-03
Chr01	irgsp1_rep	three_prime_UTR	29438245	29439319	.	-	.	Parent=Os01t0708500-03
Chr01	irgsp1_rep	three_prime_UTR	29438074	29438144	.	-	.	Parent=Os01t0708500-03
Chr01	irgsp1_rep	three_prime_UTR	29437841	29437984	.	-	.	Parent=Os01t0708500-03
Chr01	irgsp1_rep	three_prime_UTR	29437410	29437723	.	-	.	Parent=Os01t0708500-03
Chr01	irgsp1_rep	mRNA	29442652	29447102	.	+	.	ID=Os01t0708600-01;Name=Os01t0708600-01;Locus_id=Os01g0708600;Note=TRAPP I complex%2C Trs31 domain containing protein.;Transcript_evidence=AK111377 (DDBJ%2C Best hit);ORF_evidence=XP_002866245.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Transport protein particle (TRAPP) component (IPR007194),TRAPP I complex%2C Trs31 (IPR016696),NO signalling/Golgi transport  ligand-binding domain (IPR024096);NIAS_FLcDNA=002-182-B01;Expression=AK111377;TENOR=Os01t0708600-01;KEGG=Os01t0708600-01
Chr01	irgsp1_rep	five_prime_UTR	29442652	29442763	.	+	.	Parent=Os01t0708600-01
Chr01	irgsp1_rep	CDS	29442764	29442835	.	+	0	Parent=Os01t0708600-01
Chr01	irgsp1_rep	CDS	29444653	29444741	.	+	0	Parent=Os01t0708600-01
Chr01	irgsp1_rep	CDS	29445253	29445316	.	+	1	Parent=Os01t0708600-01
Chr01	irgsp1_rep	CDS	29445434	29445511	.	+	0	Parent=Os01t0708600-01
Chr01	irgsp1_rep	CDS	29445956	29446032	.	+	0	Parent=Os01t0708600-01
Chr01	irgsp1_rep	CDS	29446101	29446167	.	+	1	Parent=Os01t0708600-01
Chr01	irgsp1_rep	CDS	29446251	29446358	.	+	0	Parent=Os01t0708600-01
Chr01	irgsp1_rep	CDS	29446882	29446911	.	+	0	Parent=Os01t0708600-01
Chr01	irgsp1_rep	three_prime_UTR	29446912	29447102	.	+	.	Parent=Os01t0708600-01
Chr01	irgsp1_rep	mRNA	29448081	29450454	.	-	.	ID=Os01t0708700-01;Name=Os01t0708700-01;Locus_id=Os01g0708700;Note=IQ calmodulin-binding region domain containing protein.;Transcript_evidence=AK102451 (DDBJ%2C Best hit);ORF_evidence=NP_001148955.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);NIAS_FLcDNA=J033093O20;Expression=AK102451;TENOR=Os01t0708700-01;KEGG=Os01t0708700-01
Chr01	irgsp1_rep	five_prime_UTR	29450330	29450454	.	-	.	Parent=Os01t0708700-01
Chr01	irgsp1_rep	CDS	29450027	29450329	.	-	0	Parent=Os01t0708700-01
Chr01	irgsp1_rep	CDS	29449702	29449929	.	-	0	Parent=Os01t0708700-01
Chr01	irgsp1_rep	CDS	29448987	29449100	.	-	0	Parent=Os01t0708700-01
Chr01	irgsp1_rep	CDS	29448215	29448895	.	-	0	Parent=Os01t0708700-01
Chr01	irgsp1_rep	three_prime_UTR	29448081	29448214	.	-	.	Parent=Os01t0708700-01
Chr01	irgsp1_rep	mRNA	29447990	29449143	.	-	.	ID=Os01t0708700-02;Name=Os01t0708700-02;Locus_id=Os01g0708700;Note=Similar to calmodulin binding protein.;Transcript_evidence=AK103875 (DDBJ%2C Best hit);ORF_evidence=NP_001148955.1 (RefSeq);NIAS_FLcDNA=J033149M12;Expression=AK103875;TENOR=Os01t0708700-02;KEGG=Os01t0708700-02
Chr01	irgsp1_rep	five_prime_UTR	29449131	29449143	.	-	.	Parent=Os01t0708700-02
Chr01	irgsp1_rep	CDS	29448987	29449130	.	-	0	Parent=Os01t0708700-02
Chr01	irgsp1_rep	CDS	29448215	29448895	.	-	0	Parent=Os01t0708700-02
Chr01	irgsp1_rep	three_prime_UTR	29447990	29448214	.	-	.	Parent=Os01t0708700-02
Chr01	irgsp1_rep	mRNA	29458644	29462865	.	+	.	ID=Os01t0708900-01;Name=Os01t0708900-01;Locus_id=Os01g0708900;Note=Mitochondrial substrate carrier family protein.;Transcript_evidence=AK066220 (DDBJ%2C Best hit);ORF_evidence=NP_001148862.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial inner membrane (GO:0005743),Molecular Function: binding (GO:0005488);InterPro=Mitochondrial carrier protein (IPR002067),Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J013050L21;Expression=AK066220;TENOR=Os01t0708900-01;KEGG=Os01t0708900-01
Chr01	irgsp1_rep	five_prime_UTR	29458644	29458936	.	+	.	Parent=Os01t0708900-01
Chr01	irgsp1_rep	CDS	29458937	29459104	.	+	0	Parent=Os01t0708900-01
Chr01	irgsp1_rep	CDS	29459975	29460060	.	+	0	Parent=Os01t0708900-01
Chr01	irgsp1_rep	CDS	29460146	29460353	.	+	1	Parent=Os01t0708900-01
Chr01	irgsp1_rep	CDS	29460995	29461124	.	+	0	Parent=Os01t0708900-01
Chr01	irgsp1_rep	CDS	29461304	29461488	.	+	2	Parent=Os01t0708900-01
Chr01	irgsp1_rep	CDS	29461601	29461732	.	+	0	Parent=Os01t0708900-01
Chr01	irgsp1_rep	CDS	29462490	29462594	.	+	0	Parent=Os01t0708900-01
Chr01	irgsp1_rep	three_prime_UTR	29462595	29462865	.	+	.	Parent=Os01t0708900-01
Chr01	irgsp1_rep	mRNA	29469565	29471507	.	+	.	ID=Os01t0709000-01;Name=Os01t0709000-01;Locus_id=Os01g0709000;Note=Similar to Transcription factor MYB1.;Transcript_evidence=AK288487 (DDBJ%2C Best hit);ORF_evidence=NP_001148338.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J090040H24;TENOR=Os01t0709000-01;KEGG=Os01t0709000-01
Chr01	irgsp1_rep	five_prime_UTR	29469565	29469662	.	+	.	Parent=Os01t0709000-01
Chr01	irgsp1_rep	CDS	29469663	29469795	.	+	0	Parent=Os01t0709000-01
Chr01	irgsp1_rep	CDS	29469963	29470092	.	+	2	Parent=Os01t0709000-01
Chr01	irgsp1_rep	CDS	29470351	29470475	.	+	1	Parent=Os01t0709000-01
Chr01	irgsp1_rep	CDS	29470666	29471201	.	+	2	Parent=Os01t0709000-01
Chr01	irgsp1_rep	three_prime_UTR	29471202	29471507	.	+	.	Parent=Os01t0709000-01
Chr01	irgsp1_rep	mRNA	29470589	29473233	.	-	.	ID=Os01t0709100-01;Name=Os01t0709100-01;Locus_id=Os01g0709100;Note=Hypothetical protein.;Transcript_evidence=AK120802 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023013A15;TENOR=Os01t0709100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	29472058	29473233	.	-	.	Parent=Os01t0709100-01
Chr01	irgsp1_rep	CDS	29471704	29472057	.	-	0	Parent=Os01t0709100-01
Chr01	irgsp1_rep	three_prime_UTR	29470589	29471703	.	-	.	Parent=Os01t0709100-01
Chr01	irgsp1_rep	mRNA	29479108	29482865	.	+	.	ID=Os01t0709400-01;Name=Os01t0709400-01;Locus_id=Os01g0709400;Note=Survival protein SurE family protein.;Transcript_evidence=AK121006 (DDBJ%2C Best hit);ORF_evidence=NP_001151071.1 (RefSeq);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Survival protein SurE-like phosphatase/nucleotidase (IPR002828);NIAS_FLcDNA=J023046I03;Expression=AK121006;TENOR=Os01t0709400-01;KEGG=Os01t0709400-01 (EC:3.1.3.5)
Chr01	irgsp1_rep	five_prime_UTR	29479108	29479273	.	+	.	Parent=Os01t0709400-01
Chr01	irgsp1_rep	CDS	29479274	29479581	.	+	0	Parent=Os01t0709400-01
Chr01	irgsp1_rep	CDS	29479741	29479835	.	+	1	Parent=Os01t0709400-01
Chr01	irgsp1_rep	CDS	29479938	29480005	.	+	2	Parent=Os01t0709400-01
Chr01	irgsp1_rep	CDS	29480090	29480133	.	+	0	Parent=Os01t0709400-01
Chr01	irgsp1_rep	CDS	29480210	29480287	.	+	1	Parent=Os01t0709400-01
Chr01	irgsp1_rep	CDS	29480400	29480553	.	+	1	Parent=Os01t0709400-01
Chr01	irgsp1_rep	CDS	29481396	29481548	.	+	0	Parent=Os01t0709400-01
Chr01	irgsp1_rep	CDS	29481633	29481743	.	+	0	Parent=Os01t0709400-01
Chr01	irgsp1_rep	CDS	29481954	29482019	.	+	0	Parent=Os01t0709400-01
Chr01	irgsp1_rep	CDS	29482107	29482286	.	+	0	Parent=Os01t0709400-01
Chr01	irgsp1_rep	three_prime_UTR	29482287	29482865	.	+	.	Parent=Os01t0709400-01
Chr01	irgsp1_rep	mRNA	29488151	29492536	.	-	.	ID=Os01t0709500-01;Name=Os01t0709500-01;Locus_id=Os01g0709500;Note=Conserved hypothetical protein.;Transcript_evidence=AK066986 (DDBJ%2C Best hit);ORF_evidence=B9EZ34 (UniProt);NIAS_FLcDNA=J013093M03;TENOR=Os01t0709500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	29490952	29492536	.	-	.	Parent=Os01t0709500-01
Chr01	irgsp1_rep	CDS	29490792	29490951	.	-	0	Parent=Os01t0709500-01
Chr01	irgsp1_rep	CDS	29490600	29490689	.	-	2	Parent=Os01t0709500-01
Chr01	irgsp1_rep	CDS	29488644	29488742	.	-	2	Parent=Os01t0709500-01
Chr01	irgsp1_rep	CDS	29488358	29488564	.	-	2	Parent=Os01t0709500-01
Chr01	irgsp1_rep	CDS	29488151	29488280	.	-	2	Parent=Os01t0709500-01
Chr01	irgsp1_rep	mRNA	29483262	29492494	.	-	.	ID=Os01t0709500-02;Name=Os01t0709500-02;Locus_id=Os01g0709500;Note=Conserved hypothetical protein.;Transcript_evidence=AK121129 (DDBJ%2C Best hit);ORF_evidence=B9EZ34 (UniProt);NIAS_FLcDNA=J023075E10;TENOR=Os01t0709500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	29491917	29492494	.	-	.	Parent=Os01t0709500-02
Chr01	irgsp1_rep	CDS	29491805	29491916	.	-	0	Parent=Os01t0709500-02
Chr01	irgsp1_rep	CDS	29490792	29490923	.	-	2	Parent=Os01t0709500-02
Chr01	irgsp1_rep	CDS	29490600	29490689	.	-	2	Parent=Os01t0709500-02
Chr01	irgsp1_rep	CDS	29488644	29488742	.	-	2	Parent=Os01t0709500-02
Chr01	irgsp1_rep	CDS	29488358	29488564	.	-	2	Parent=Os01t0709500-02
Chr01	irgsp1_rep	CDS	29488084	29488280	.	-	2	Parent=Os01t0709500-02
Chr01	irgsp1_rep	three_prime_UTR	29487907	29488083	.	-	.	Parent=Os01t0709500-02
Chr01	irgsp1_rep	three_prime_UTR	29487337	29487441	.	-	.	Parent=Os01t0709500-02
Chr01	irgsp1_rep	three_prime_UTR	29486855	29487226	.	-	.	Parent=Os01t0709500-02
Chr01	irgsp1_rep	three_prime_UTR	29486109	29486363	.	-	.	Parent=Os01t0709500-02
Chr01	irgsp1_rep	three_prime_UTR	29485056	29485457	.	-	.	Parent=Os01t0709500-02
Chr01	irgsp1_rep	three_prime_UTR	29484343	29484586	.	-	.	Parent=Os01t0709500-02
Chr01	irgsp1_rep	three_prime_UTR	29483262	29484259	.	-	.	Parent=Os01t0709500-02
Chr01	irgsp1_rep	mRNA	29483273	29488397	.	-	.	ID=Os01t0709500-03;Name=Os01t0709500-03;Locus_id=Os01g0709500;Note=Similar to Serine/threonine-protein kinase PBS1 (EC 2.7.1.37) (AvrPphB susceptible protein 1).;Transcript_evidence=AK065353 (DDBJ%2C Best hit);ORF_evidence=A2Q551 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J013021E05;Expression=AK065353;TENOR=Os01t0709500-03;KEGG=Os01t0709500-03 (EC:2.7.1.37)
Chr01	irgsp1_rep	five_prime_UTR	29488358	29488397	.	-	.	Parent=Os01t0709500-03
Chr01	irgsp1_rep	five_prime_UTR	29488115	29488280	.	-	.	Parent=Os01t0709500-03
Chr01	irgsp1_rep	CDS	29487907	29488114	.	-	0	Parent=Os01t0709500-03
Chr01	irgsp1_rep	CDS	29487337	29487441	.	-	2	Parent=Os01t0709500-03
Chr01	irgsp1_rep	CDS	29486855	29487226	.	-	2	Parent=Os01t0709500-03
Chr01	irgsp1_rep	CDS	29486109	29486363	.	-	2	Parent=Os01t0709500-03
Chr01	irgsp1_rep	CDS	29485056	29485457	.	-	2	Parent=Os01t0709500-03
Chr01	irgsp1_rep	CDS	29484343	29484586	.	-	2	Parent=Os01t0709500-03
Chr01	irgsp1_rep	CDS	29483635	29484259	.	-	1	Parent=Os01t0709500-03
Chr01	irgsp1_rep	three_prime_UTR	29483273	29483634	.	-	.	Parent=Os01t0709500-03
Chr01	irgsp1_rep	mRNA	29483251	29486225	.	-	.	ID=Os01t0709500-04;Name=Os01t0709500-04;Locus_id=Os01g0709500;Note=Similar to Protein kinase.;Transcript_evidence=AK105743 (DDBJ%2C Best hit);ORF_evidence=C6ZRT8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-202-B03;Expression=AK105743;TENOR=Os01t0709500-04;KEGG=Os01t0709500-04
Chr01	irgsp1_rep	five_prime_UTR	29486224	29486225	.	-	.	Parent=Os01t0709500-04
Chr01	irgsp1_rep	CDS	29486109	29486223	.	-	0	Parent=Os01t0709500-04
Chr01	irgsp1_rep	CDS	29485056	29485457	.	-	2	Parent=Os01t0709500-04
Chr01	irgsp1_rep	CDS	29484343	29484586	.	-	2	Parent=Os01t0709500-04
Chr01	irgsp1_rep	CDS	29483635	29484259	.	-	1	Parent=Os01t0709500-04
Chr01	irgsp1_rep	three_prime_UTR	29483251	29483634	.	-	.	Parent=Os01t0709500-04
Chr01	irgsp1_rep	mRNA	29484876	29488093	.	+	.	ID=Os01t0709750-01;Name=Os01t0709750-01;Locus_id=Os01g0709750;Note=Hypothetical gene.;Transcript_evidence=AK288759 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090066M14;TENOR=Os01t0709750-01;KEGG=Os01t0709750-01
Chr01	irgsp1_rep	five_prime_UTR	29484876	29485691	.	+	.	Parent=Os01t0709750-01
Chr01	irgsp1_rep	CDS	29485692	29485916	.	+	0	Parent=Os01t0709750-01
Chr01	irgsp1_rep	three_prime_UTR	29485917	29488093	.	+	.	Parent=Os01t0709750-01
Chr01	irgsp1_rep	mRNA	29501122	29506948	.	+	.	ID=Os01t0710000-01;Name=Os01t0710000-01;Locus_id=Os01g0710000;Oryzabase Gene Symbol Synonym(s)=OsWD40-23;Note=Similar to WD-repeat protein RBAP1.;Transcript_evidence=AK111794 (DDBJ%2C Best hit);ORF_evidence=NP_001105067.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),Histone-binding protein RBBP4 (IPR022052);NIAS_FLcDNA=J023104J19;Oryzabase=10704;Expression=AK111794;TENOR=Os01t0710000-01;KEGG=Os01t0710000-01
Chr01	irgsp1_rep	five_prime_UTR	29501122	29501290	.	+	.	Parent=Os01t0710000-01
Chr01	irgsp1_rep	CDS	29501291	29501412	.	+	0	Parent=Os01t0710000-01
Chr01	irgsp1_rep	CDS	29502146	29502205	.	+	1	Parent=Os01t0710000-01
Chr01	irgsp1_rep	CDS	29502385	29502475	.	+	1	Parent=Os01t0710000-01
Chr01	irgsp1_rep	CDS	29502852	29502914	.	+	0	Parent=Os01t0710000-01
Chr01	irgsp1_rep	CDS	29503161	29503226	.	+	0	Parent=Os01t0710000-01
Chr01	irgsp1_rep	CDS	29503330	29503404	.	+	0	Parent=Os01t0710000-01
Chr01	irgsp1_rep	CDS	29503626	29503701	.	+	0	Parent=Os01t0710000-01
Chr01	irgsp1_rep	CDS	29504247	29504448	.	+	2	Parent=Os01t0710000-01
Chr01	irgsp1_rep	CDS	29504711	29504792	.	+	1	Parent=Os01t0710000-01
Chr01	irgsp1_rep	CDS	29504896	29504969	.	+	0	Parent=Os01t0710000-01
Chr01	irgsp1_rep	CDS	29505118	29505224	.	+	1	Parent=Os01t0710000-01
Chr01	irgsp1_rep	CDS	29505330	29505409	.	+	2	Parent=Os01t0710000-01
Chr01	irgsp1_rep	CDS	29505562	29505623	.	+	0	Parent=Os01t0710000-01
Chr01	irgsp1_rep	CDS	29506302	29506401	.	+	1	Parent=Os01t0710000-01
Chr01	irgsp1_rep	CDS	29506539	29506640	.	+	0	Parent=Os01t0710000-01
Chr01	irgsp1_rep	three_prime_UTR	29506641	29506948	.	+	.	Parent=Os01t0710000-01
Chr01	irgsp1_rep	mRNA	29508034	29509147	.	+	.	ID=Os01t0710100-00;Name=Os01t0710100-00;Locus_id=Os01g0710100;Note=Hypothetical conserved gene.;Transcript_evidence=AK357053 (DDBJ);ORF_evidence=NP_001044037.2 (RefSeq);InterPro=Protein of unknown function DUF761%2C plant (IPR008480);TENOR=Os01t0710100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	29508034	29509146	.	+	0	Parent=Os01t0710100-00
Chr01	irgsp1_rep	three_prime_UTR	29509147	29509147	.	+	.	Parent=Os01t0710100-00
Chr01	irgsp1_rep	mRNA	29513380	29514941	.	-	.	ID=Os01t0710200-01;Name=Os01t0710200-01;Locus_id=Os01g0710200;RAP-DB Gene Symbol Synonym(s)=PAO1%2C OsPAO1%2C OsAO4;RAP-DB Gene Name Synonym(s)=POLYAMINE OXIDASE 1%2C Polyamine oxidase 1%2C Amine oxidase 4;CGSNL Gene Symbol=PAO1;CGSNL Gene Name=POLYAMINE OXIDASE 1;Oryzabase Gene Symbol Synonym(s)=OsPAO1%2C OsAO4%2C AO4;Oryzabase Gene Name Synonym(s)=Polyamine oxidase 1%2C Amine oxidase 4;Note=Polyamine oxidase%2C Polyamine catabolism;Transcript_evidence=NM_001050573;ORF_evidence=Q5NAI7;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Amine oxidase (IPR002937);Manual Curation=July 17%2C 2015;Literature_PMID=24105034;Oryzabase=11403;TENOR=Os01t0710200-00
Chr01	irgsp1_rep	five_prime_UTR	29514919	29514941	.	-	.	Parent=Os01t0710200-01
Chr01	irgsp1_rep	CDS	29513380	29514918	.	-	0	Parent=Os01t0710200-01
Chr01	irgsp1_rep	mRNA	29521077	29523276	.	+	.	ID=Os01t0710250-01;Name=Os01t0710250-01;Locus_id=Os01g0710250;Note=Hypothetical conserved gene.;Transcript_evidence=AK243119 (DDBJ%2C Best hit);ORF_evidence=Q5NAI6 (UniProt);NIAS_FLcDNA=J100028G14;TENOR=Os01t0710250-01
Chr01	irgsp1_rep	five_prime_UTR	29521077	29522115	.	+	.	Parent=Os01t0710250-01
Chr01	irgsp1_rep	five_prime_UTR	29522824	29523101	.	+	.	Parent=Os01t0710250-01
Chr01	irgsp1_rep	CDS	29523102	29523276	.	+	0	Parent=Os01t0710250-01
Chr01	irgsp1_rep	mRNA	29521879	29522961	.	-	.	ID=Os01t0710300-00;Name=Os01t0710300-00;Locus_id=Os01g0710300;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q9ASE4 (UniProt);TENOR=Os01t0710300-00;KEGG=Os01t0710300-00
Chr01	irgsp1_rep	CDS	29522824	29522961	.	-	0	Parent=Os01t0710300-00
Chr01	irgsp1_rep	CDS	29521879	29522115	.	-	0	Parent=Os01t0710300-00
Chr01	irgsp1_rep	mRNA	29529874	29532765	.	-	.	ID=Os01t0710700-01;Name=Os01t0710700-01;Locus_id=Os01g0710700;Oryzabase Gene Name Synonym(s)=lipase;Note=Lipase%2C class 3 family protein.;Transcript_evidence=AK104373 (DDBJ%2C Best hit),AK069577 (DDBJ%2C Best hit),AK098952 (DDBJ%2C Best hit),AK106129 (DDBJ%2C Best hit);ORF_evidence=B8A8C9 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921);NIAS_FLcDNA=001-035-F02,J023022J10,J013055J12,001-207-F09;Oryzabase=16032;Expression=AK104373;TENOR=Os01t0710700-01;KEGG=Os01t0710700-01
Chr01	irgsp1_rep	five_prime_UTR	29532658	29532765	.	-	.	Parent=Os01t0710700-01
Chr01	irgsp1_rep	CDS	29531291	29532657	.	-	0	Parent=Os01t0710700-01
Chr01	irgsp1_rep	CDS	29530178	29530208	.	-	1	Parent=Os01t0710700-01
Chr01	irgsp1_rep	three_prime_UTR	29529874	29530177	.	-	.	Parent=Os01t0710700-01
Chr01	irgsp1_rep	mRNA	29534257	29536164	.	-	.	ID=Os01t0710800-01;Name=Os01t0710800-01;Locus_id=Os01g0710800;Note=Conserved hypothetical protein.;Transcript_evidence=AK071099 (DDBJ%2C Best hit);ORF_evidence=Q5NAH7 (UniProt);NIAS_FLcDNA=J023081K01;Expression=AK071099;TENOR=Os01t0710800-01;KEGG=Os01t0710800-01
Chr01	irgsp1_rep	five_prime_UTR	29535857	29536164	.	-	.	Parent=Os01t0710800-01
Chr01	irgsp1_rep	CDS	29535675	29535856	.	-	0	Parent=Os01t0710800-01
Chr01	irgsp1_rep	CDS	29535426	29535525	.	-	1	Parent=Os01t0710800-01
Chr01	irgsp1_rep	three_prime_UTR	29535378	29535425	.	-	.	Parent=Os01t0710800-01
Chr01	irgsp1_rep	three_prime_UTR	29534257	29535299	.	-	.	Parent=Os01t0710800-01
Chr01	irgsp1_rep	mRNA	29534964	29536139	.	-	.	ID=Os01t0710800-02;Name=Os01t0710800-02;Locus_id=Os01g0710800;Note=Hypothetical protein.;Transcript_evidence=AK069973 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023035J19;TENOR=Os01t0710800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	29535750	29536139	.	-	0	Parent=Os01t0710800-02
Chr01	irgsp1_rep	three_prime_UTR	29535675	29535749	.	-	.	Parent=Os01t0710800-02
Chr01	irgsp1_rep	three_prime_UTR	29535378	29535443	.	-	.	Parent=Os01t0710800-02
Chr01	irgsp1_rep	three_prime_UTR	29534964	29535299	.	-	.	Parent=Os01t0710800-02
Chr01	irgsp1_rep	mRNA	29536726	29542409	.	+	.	ID=Os01t0711000-01;Name=Os01t0711000-01;Locus_id=Os01g0711000;Note=Similar to Vacuolar ATP synthase subunit B isoform 2 (EC 3.6.3.14) (V-ATPase B subunit 2) (Vacuolar proton pump B subunit 2).;Transcript_evidence=AK103899 (DDBJ%2C Best hit);ORF_evidence=Q9SZN1 (UniProt);GO=Biological Process: ATP hydrolysis coupled proton transport (GO:0015991),Biological Process: proton transport (GO:0015992),Biological Process: ATP metabolic process (GO:0046034),Cellular Component: proton-transporting two-sector ATPase complex (GO:0016469),Cellular Component: proton-transporting two-sector ATPase complex%2C catalytic domain (GO:0033178),Cellular Component: proton-transporting V-type ATPase%2C V1 domain (GO:0033180),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C catalyzing transmembrane movement of substances (GO:0016820),Molecular Function: hydrogen ion transporting ATP synthase activity%2C rotational mechanism (GO:0046933),Molecular Function: proton-transporting ATPase activity%2C rotational mechanism (GO:0046961);InterPro=ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C nucleotide-binding domain (IPR000194),ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C C-terminal (IPR000793),ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C N-terminal (IPR004100),ATPase%2C V1 complex%2C subunit B (IPR005723),ATPase%2C alpha/beta subunit%2C nucleotide-binding domain%2C active site (IPR020003);NIAS_FLcDNA=J033150J04;Expression=AK103899;TENOR=Os01t0711000-01;KEGG=Os01t0711000-01 (EC:3.6.3.14)
Chr01	irgsp1_rep	five_prime_UTR	29536726	29536797	.	+	.	Parent=Os01t0711000-01
Chr01	irgsp1_rep	five_prime_UTR	29537788	29537811	.	+	.	Parent=Os01t0711000-01
Chr01	irgsp1_rep	CDS	29537812	29537869	.	+	0	Parent=Os01t0711000-01
Chr01	irgsp1_rep	CDS	29537990	29538045	.	+	2	Parent=Os01t0711000-01
Chr01	irgsp1_rep	CDS	29538150	29538248	.	+	0	Parent=Os01t0711000-01
Chr01	irgsp1_rep	CDS	29538732	29538791	.	+	0	Parent=Os01t0711000-01
Chr01	irgsp1_rep	CDS	29539028	29539139	.	+	0	Parent=Os01t0711000-01
Chr01	irgsp1_rep	CDS	29539229	29539437	.	+	2	Parent=Os01t0711000-01
Chr01	irgsp1_rep	CDS	29539835	29539963	.	+	0	Parent=Os01t0711000-01
Chr01	irgsp1_rep	CDS	29540068	29540205	.	+	0	Parent=Os01t0711000-01
Chr01	irgsp1_rep	CDS	29540786	29540936	.	+	0	Parent=Os01t0711000-01
Chr01	irgsp1_rep	CDS	29541137	29541219	.	+	2	Parent=Os01t0711000-01
Chr01	irgsp1_rep	CDS	29541401	29541448	.	+	0	Parent=Os01t0711000-01
Chr01	irgsp1_rep	CDS	29541571	29541624	.	+	0	Parent=Os01t0711000-01
Chr01	irgsp1_rep	CDS	29541714	29541797	.	+	0	Parent=Os01t0711000-01
Chr01	irgsp1_rep	CDS	29541895	29542080	.	+	0	Parent=Os01t0711000-01
Chr01	irgsp1_rep	three_prime_UTR	29542081	29542409	.	+	.	Parent=Os01t0711000-01
Chr01	irgsp1_rep	mRNA	29539228	29542080	.	-	.	ID=Os01t0711050-00;Name=Os01t0711050-00;Locus_id=Os01g0711050;Note=Hypothetical gene.;Transcript_evidence=BT016866 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0711050-00;KEGG=Os01t0711050-00
Chr01	irgsp1_rep	five_prime_UTR	29541893	29542080	.	-	.	Parent=Os01t0711050-00
Chr01	irgsp1_rep	five_prime_UTR	29541695	29541794	.	-	.	Parent=Os01t0711050-00
Chr01	irgsp1_rep	five_prime_UTR	29541552	29541607	.	-	.	Parent=Os01t0711050-00
Chr01	irgsp1_rep	five_prime_UTR	29541136	29541250	.	-	.	Parent=Os01t0711050-00
Chr01	irgsp1_rep	five_prime_UTR	29540781	29540935	.	-	.	Parent=Os01t0711050-00
Chr01	irgsp1_rep	five_prime_UTR	29540178	29540196	.	-	.	Parent=Os01t0711050-00
Chr01	irgsp1_rep	CDS	29540067	29540177	.	-	0	Parent=Os01t0711050-00
Chr01	irgsp1_rep	CDS	29539823	29539962	.	-	0	Parent=Os01t0711050-00
Chr01	irgsp1_rep	CDS	29539310	29539430	.	-	1	Parent=Os01t0711050-00
Chr01	irgsp1_rep	three_prime_UTR	29539228	29539309	.	-	.	Parent=Os01t0711050-00
Chr01	irgsp1_rep	mRNA	29544661	29548520	.	+	.	ID=Os01t0711100-01;Name=Os01t0711100-01;Locus_id=Os01g0711100;Note=Similar to Mitochondrial processing peptidase beta subunit.;Transcript_evidence=AK068087 (DDBJ%2C Best hit);ORF_evidence=Q9AXQ2 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: catalytic activity (GO:0003824),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: metal ion binding (GO:0046872);InterPro=Peptidase M16%2C zinc-binding site (IPR001431),Peptidase M16%2C core (IPR011237),Metalloenzyme%2C LuxS/M16 peptidase-like%2C metal-binding (IPR011249),Peptidase M16%2C N-terminal (IPR011765);NIAS_FLcDNA=J013134B15;TENOR=Os01t0711100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	29544661	29544767	.	+	.	Parent=Os01t0711100-01
Chr01	irgsp1_rep	CDS	29544768	29545242	.	+	0	Parent=Os01t0711100-01
Chr01	irgsp1_rep	CDS	29545272	29545322	.	+	2	Parent=Os01t0711100-01
Chr01	irgsp1_rep	CDS	29545933	29545964	.	+	2	Parent=Os01t0711100-01
Chr01	irgsp1_rep	three_prime_UTR	29545965	29546097	.	+	.	Parent=Os01t0711100-01
Chr01	irgsp1_rep	three_prime_UTR	29546191	29546328	.	+	.	Parent=Os01t0711100-01
Chr01	irgsp1_rep	three_prime_UTR	29546428	29546579	.	+	.	Parent=Os01t0711100-01
Chr01	irgsp1_rep	three_prime_UTR	29546692	29546800	.	+	.	Parent=Os01t0711100-01
Chr01	irgsp1_rep	three_prime_UTR	29547024	29547122	.	+	.	Parent=Os01t0711100-01
Chr01	irgsp1_rep	three_prime_UTR	29547794	29547859	.	+	.	Parent=Os01t0711100-01
Chr01	irgsp1_rep	three_prime_UTR	29547951	29548058	.	+	.	Parent=Os01t0711100-01
Chr01	irgsp1_rep	three_prime_UTR	29548171	29548520	.	+	.	Parent=Os01t0711100-01
Chr01	irgsp1_rep	mRNA	29551666	29553996	.	+	.	ID=Os01t0711200-01;Name=Os01t0711200-01;Locus_id=Os01g0711200;Note=Tyrosine protein kinase domain containing protein.;Transcript_evidence=AK107001 (DDBJ%2C Best hit);ORF_evidence=A2WUC3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=002-120-C06;Expression=AK107001;TENOR=Os01t0711200-01;KEGG=Os01t0711200-01
Chr01	irgsp1_rep	five_prime_UTR	29551666	29551772	.	+	.	Parent=Os01t0711200-01
Chr01	irgsp1_rep	CDS	29551773	29553120	.	+	0	Parent=Os01t0711200-01
Chr01	irgsp1_rep	CDS	29553206	29553828	.	+	2	Parent=Os01t0711200-01
Chr01	irgsp1_rep	three_prime_UTR	29553829	29553996	.	+	.	Parent=Os01t0711200-01
Chr01	irgsp1_rep	mRNA	29563666	29566585	.	+	.	ID=Os01t0711400-01;Name=Os01t0711400-01;Locus_id=Os01g0711400;Note=Similar to Victorin binding protein.;Transcript_evidence=AK111968 (DDBJ%2C Best hit);ORF_evidence=Q38766 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: glycine dehydrogenase (decarboxylating) activity (GO:0004375),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424),Glycine cleavage system P-protein%2C N-terminal (IPR020580),Glycine cleavage system P protein (IPR020581);NIAS_FLcDNA=006-204-B09;Oryzabase=20197;Expression=AK111968;TENOR=Os01t0711400-01;KEGG=Os01t0711400-01 (EC:1.4.4.2)
Chr01	irgsp1_rep	five_prime_UTR	29563666	29563666	.	+	.	Parent=Os01t0711400-01
Chr01	irgsp1_rep	CDS	29563667	29563777	.	+	0	Parent=Os01t0711400-01
Chr01	irgsp1_rep	CDS	29564265	29564417	.	+	0	Parent=Os01t0711400-01
Chr01	irgsp1_rep	CDS	29565030	29565218	.	+	0	Parent=Os01t0711400-01
Chr01	irgsp1_rep	CDS	29565311	29565388	.	+	0	Parent=Os01t0711400-01
Chr01	irgsp1_rep	CDS	29565471	29565596	.	+	0	Parent=Os01t0711400-01
Chr01	irgsp1_rep	CDS	29565685	29565783	.	+	0	Parent=Os01t0711400-01
Chr01	irgsp1_rep	CDS	29566058	29566175	.	+	0	Parent=Os01t0711400-01
Chr01	irgsp1_rep	CDS	29566274	29566368	.	+	2	Parent=Os01t0711400-01
Chr01	irgsp1_rep	three_prime_UTR	29566369	29566585	.	+	.	Parent=Os01t0711400-01
Chr01	irgsp1_rep	mRNA	29568500	29572068	.	+	.	ID=Os01t0711500-01;Name=Os01t0711500-01;Locus_id=Os01g0711500;RAP-DB Gene Symbol Synonym(s)=OsCBL10;RAP-DB Gene Name Synonym(s)=Calcineurin B-like protein 10;CGSNL Gene Symbol=CBL10;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN 10;Oryzabase Gene Symbol Synonym(s)=OsCBL10;Oryzabase Gene Name Synonym(s)=Calcineurin B-like protein 10;Note=Calcineurin B-like protein%2C Calcium sensor%2C Flooding response during seed germination;Transcript_evidence=DQ201204,CT836526 (indica);ORF_evidence=Q3HRN7;GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand domain pair (IPR011992),EF-hand domain (IPR002048),EF-Hand 1%2C calcium-binding site (IPR018247);Manual Curation=April 18%2C 2018;Literature_PMID=29495079,18395997;Oryzabase=6098;TENOR=Os01t0711500-00;KEGG=Os01t0711500-00
Chr01	irgsp1_rep	five_prime_UTR	29568500	29568670	.	+	.	Parent=Os01t0711500-01
Chr01	irgsp1_rep	CDS	29568671	29568700	.	+	0	Parent=Os01t0711500-01
Chr01	irgsp1_rep	CDS	29568844	29569060	.	+	0	Parent=Os01t0711500-01
Chr01	irgsp1_rep	CDS	29569155	29569237	.	+	2	Parent=Os01t0711500-01
Chr01	irgsp1_rep	CDS	29569808	29569867	.	+	0	Parent=Os01t0711500-01
Chr01	irgsp1_rep	CDS	29570269	29570377	.	+	0	Parent=Os01t0711500-01
Chr01	irgsp1_rep	CDS	29570475	29570527	.	+	2	Parent=Os01t0711500-01
Chr01	irgsp1_rep	CDS	29571013	29571093	.	+	0	Parent=Os01t0711500-01
Chr01	irgsp1_rep	CDS	29571174	29571286	.	+	0	Parent=Os01t0711500-01
Chr01	irgsp1_rep	CDS	29571430	29571484	.	+	1	Parent=Os01t0711500-01
Chr01	irgsp1_rep	three_prime_UTR	29571485	29571520	.	+	.	Parent=Os01t0711500-01
Chr01	irgsp1_rep	three_prime_UTR	29571757	29572068	.	+	.	Parent=Os01t0711500-01
Chr01	irgsp1_rep	mRNA	29572656	29575622	.	+	.	ID=Os01t0711600-01;Name=Os01t0711600-01;Locus_id=Os01g0711600;Oryzabase Gene Symbol Synonym(s)=OsRTH1%2C RTH1;Oryzabase Gene Name Synonym(s)=Reversion-To-ethylene Sensitivity1 homologue 1;Note=Protein of unknown function DUF778 family protein.;Transcript_evidence=AK099559 (DDBJ%2C Best hit);ORF_evidence=Q1HTV2 (UniProt);InterPro=Protein of unknown function DUF778 (IPR008496);NIAS_FLcDNA=J013034H16;Oryzabase=10411;Expression=AK099559;TENOR=Os01t0711600-01;KEGG=Os01t0711600-01
Chr01	irgsp1_rep	five_prime_UTR	29572656	29572922	.	+	.	Parent=Os01t0711600-01
Chr01	irgsp1_rep	five_prime_UTR	29574017	29574081	.	+	.	Parent=Os01t0711600-01
Chr01	irgsp1_rep	CDS	29574082	29574387	.	+	0	Parent=Os01t0711600-01
Chr01	irgsp1_rep	CDS	29575159	29575578	.	+	0	Parent=Os01t0711600-01
Chr01	irgsp1_rep	three_prime_UTR	29575579	29575622	.	+	.	Parent=Os01t0711600-01
Chr01	irgsp1_rep	mRNA	29580714	29582886	.	+	.	ID=Os01t0711700-00;Name=Os01t0711700-00;Locus_id=Os01g0711700;Note=Non-protein coding transcript.;Transcript_evidence=BT085039 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0711700-00
Chr01	irgsp1_rep	exon	29580714	29580837	.	+	.	Parent=Os01t0711700-00
Chr01	irgsp1_rep	exon	29581112	29581360	.	+	.	Parent=Os01t0711700-00
Chr01	irgsp1_rep	exon	29581467	29581747	.	+	.	Parent=Os01t0711700-00
Chr01	irgsp1_rep	exon	29582208	29582353	.	+	.	Parent=Os01t0711700-00
Chr01	irgsp1_rep	exon	29582793	29582886	.	+	.	Parent=Os01t0711700-00
Chr01	irgsp1_rep	mRNA	29580715	29583046	.	-	.	ID=Os01t0711800-00;Name=Os01t0711800-00;Locus_id=Os01g0711800;Oryzabase Gene Symbol Synonym(s)=Orysa%3BNAP1%3B3%2C OsNAP1_L3;Oryzabase Gene Name Synonym(s)=nucleosome assembly protein 1-like protein 3%2C Nucleosome assembly protein 1%3B3;Note=Nucleosome assembly protein (NAP) family protein.;Transcript_evidence=AY830122 (DDBJ%2C Best hit);ORF_evidence=Q70Z20 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleus (GO:0005634);InterPro=Nucleosome assembly protein (NAP) (IPR002164);Oryzabase=14085;TENOR=Os01t0711800-00;KEGG=Os01t0711800-00
Chr01	irgsp1_rep	CDS	29583002	29583046	.	-	0	Parent=Os01t0711800-00
Chr01	irgsp1_rep	CDS	29582778	29582873	.	-	0	Parent=Os01t0711800-00
Chr01	irgsp1_rep	CDS	29582245	29582337	.	-	0	Parent=Os01t0711800-00
Chr01	irgsp1_rep	CDS	29582000	29582054	.	-	0	Parent=Os01t0711800-00
Chr01	irgsp1_rep	CDS	29581824	29581888	.	-	2	Parent=Os01t0711800-00
Chr01	irgsp1_rep	CDS	29581450	29581637	.	-	0	Parent=Os01t0711800-00
Chr01	irgsp1_rep	CDS	29581177	29581345	.	-	1	Parent=Os01t0711800-00
Chr01	irgsp1_rep	CDS	29581043	29581086	.	-	0	Parent=Os01t0711800-00
Chr01	irgsp1_rep	CDS	29580715	29580853	.	-	1	Parent=Os01t0711800-00
Chr01	irgsp1_rep	mRNA	29584058	29584603	.	+	.	ID=Os01t0711900-01;Name=Os01t0711900-01;Locus_id=Os01g0711900;Note=Conserved hypothetical protein.;Transcript_evidence=AK108302 (DDBJ%2C Best hit);ORF_evidence=A2ZX51 (UniProt);NIAS_FLcDNA=002-141-F02;TENOR=Os01t0711900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	29584058	29584058	.	+	.	Parent=Os01t0711900-01
Chr01	irgsp1_rep	CDS	29584059	29584490	.	+	0	Parent=Os01t0711900-01
Chr01	irgsp1_rep	three_prime_UTR	29584491	29584603	.	+	.	Parent=Os01t0711900-01
Chr01	irgsp1_rep	mRNA	29597417	29598085	.	-	.	ID=Os01t0712500-00;Name=Os01t0712500-00;Locus_id=Os01g0712500;Note=Conserved hypothetical protein.;Transcript_evidence=AK375495 (DDBJ);ORF_evidence=NP_001172536.1 (RefSeq);TENOR=Os01t0712500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	29597417	29598085	.	-	0	Parent=Os01t0712500-00
Chr01	irgsp1_rep	mRNA	29598953	29601167	.	+	.	ID=Os01t0712501-01;Name=Os01t0712501-01;Locus_id=Os01g0712501;Note=Hypothetical gene.;Transcript_evidence=AK287939 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J075013P13;TENOR=Os01t0712501-01;KEGG=Os01t0712501-01
Chr01	irgsp1_rep	five_prime_UTR	29598953	29598973	.	+	.	Parent=Os01t0712501-01
Chr01	irgsp1_rep	CDS	29598974	29599200	.	+	0	Parent=Os01t0712501-01
Chr01	irgsp1_rep	CDS	29599463	29599490	.	+	1	Parent=Os01t0712501-01
Chr01	irgsp1_rep	three_prime_UTR	29599491	29599583	.	+	.	Parent=Os01t0712501-01
Chr01	irgsp1_rep	three_prime_UTR	29599714	29599799	.	+	.	Parent=Os01t0712501-01
Chr01	irgsp1_rep	three_prime_UTR	29599967	29600053	.	+	.	Parent=Os01t0712501-01
Chr01	irgsp1_rep	three_prime_UTR	29600236	29600316	.	+	.	Parent=Os01t0712501-01
Chr01	irgsp1_rep	three_prime_UTR	29600399	29600546	.	+	.	Parent=Os01t0712501-01
Chr01	irgsp1_rep	three_prime_UTR	29600730	29600797	.	+	.	Parent=Os01t0712501-01
Chr01	irgsp1_rep	three_prime_UTR	29600888	29601167	.	+	.	Parent=Os01t0712501-01
Chr01	irgsp1_rep	mRNA	29599004	29601061	.	-	.	ID=Os01t0712600-00;Name=Os01t0712600-00;Locus_id=Os01g0712600;Note=Similar to methyltransferase.;Transcript_evidence=CT834951 (DDBJ%2C Best hit);ORF_evidence=NP_194688.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Methyltransferase type 11 (IPR013216);TENOR=Os01t0712600-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	29600966	29601061	.	-	.	Parent=Os01t0712600-00
Chr01	irgsp1_rep	CDS	29600888	29600965	.	-	0	Parent=Os01t0712600-00
Chr01	irgsp1_rep	CDS	29600730	29600797	.	-	0	Parent=Os01t0712600-00
Chr01	irgsp1_rep	CDS	29600399	29600546	.	-	1	Parent=Os01t0712600-00
Chr01	irgsp1_rep	CDS	29600236	29600316	.	-	0	Parent=Os01t0712600-00
Chr01	irgsp1_rep	CDS	29599967	29600053	.	-	0	Parent=Os01t0712600-00
Chr01	irgsp1_rep	CDS	29599714	29599799	.	-	0	Parent=Os01t0712600-00
Chr01	irgsp1_rep	CDS	29599463	29599583	.	-	1	Parent=Os01t0712600-00
Chr01	irgsp1_rep	CDS	29599126	29599200	.	-	0	Parent=Os01t0712600-00
Chr01	irgsp1_rep	three_prime_UTR	29599004	29599125	.	-	.	Parent=Os01t0712600-00
Chr01	irgsp1_rep	mRNA	29605141	29606513	.	-	.	ID=Os01t0712700-01;Name=Os01t0712700-01;Locus_id=Os01g0712700;Note=CMP/dCMP deaminase%2C zinc-binding domain containing protein.;Transcript_evidence=AK243606 (DDBJ%2C Best hit);ORF_evidence=A2WUD7 (UniProt);GO=Biological Process: cytidine deamination (GO:0009972),Molecular Function: catalytic activity (GO:0003824),Molecular Function: cytidine deaminase activity (GO:0004126),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: hydrolase activity (GO:0016787);InterPro=CMP/dCMP deaminase%2C zinc-binding (IPR002125),Cytidine deaminase%2C homodimeric (IPR006263),Cytidine/deoxycytidylate deaminase%2C zinc-binding domain (IPR013171),APOBEC/CMP deaminase%2C zinc-binding (IPR016192),Cytidine deaminase-like (IPR016193);NIAS_FLcDNA=J100085E05;TENOR=Os01t0712700-01;KEGG=Os01t0712700-01 (EC:3.5.4.5)
Chr01	irgsp1_rep	five_prime_UTR	29606386	29606513	.	-	.	Parent=Os01t0712700-01
Chr01	irgsp1_rep	CDS	29605447	29606385	.	-	0	Parent=Os01t0712700-01
Chr01	irgsp1_rep	three_prime_UTR	29605141	29605446	.	-	.	Parent=Os01t0712700-01
Chr01	irgsp1_rep	mRNA	29610944	29612232	.	+	.	ID=Os01t0712800-00;Name=Os01t0712800-00;Locus_id=Os01g0712800;Note=Hypothetical conserved gene.;Transcript_evidence=FP095504 (DDBJ);ORF_evidence=Q5U1S5 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);TENOR=Os01t0712800-00;KEGG=Os01t0712800-00
Chr01	irgsp1_rep	CDS	29610944	29611270	.	+	0	Parent=Os01t0712800-00
Chr01	irgsp1_rep	CDS	29611377	29611731	.	+	0	Parent=Os01t0712800-00
Chr01	irgsp1_rep	CDS	29611814	29612232	.	+	2	Parent=Os01t0712800-00
Chr01	irgsp1_rep	mRNA	29620958	29622314	.	+	.	ID=Os01t0713200-01;Name=Os01t0713200-01;Locus_id=Os01g0713200;CGSNL Gene Symbol=GNS10;CGSNL Gene Name=BETA-1%2C3-GLUCANASE 10;Oryzabase Gene Symbol Synonym(s)=Gns10%2C OsGns10;Oryzabase Gene Name Synonym(s)=beta-1%2C 3-glucanase 10;Note=Similar to Beta-glucanase.;Transcript_evidence=AK060113 (DDBJ%2C Best hit),AK060862 (DDBJ%2C Best hit),AK104472 (DDBJ%2C Best hit);ORF_evidence=Q9SXY7 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=006-308-D11,001-034-G03,006-301-D12;Oryzabase=13928;TENOR=Os01t0713200-01
Chr01	irgsp1_rep	five_prime_UTR	29620958	29620970	.	+	.	Parent=Os01t0713200-01
Chr01	irgsp1_rep	CDS	29620971	29621043	.	+	0	Parent=Os01t0713200-01
Chr01	irgsp1_rep	CDS	29621225	29622168	.	+	2	Parent=Os01t0713200-01
Chr01	irgsp1_rep	three_prime_UTR	29622169	29622314	.	+	.	Parent=Os01t0713200-01
Chr01	irgsp1_rep	mRNA	29637792	29642862	.	+	.	ID=Os01t0713600-01;Name=Os01t0713600-01;Locus_id=Os01g0713600;RAP-DB Gene Symbol Synonym(s)=OsLFL1;RAP-DB Gene Name Synonym(s)=LEC2 and FUSCA3 Like 1%2C LEAFY COTYLEDON 2 and FUSCA 3-LIKE 1;CGSNL Gene Symbol=LFL1;CGSNL Gene Name=LATE-FLOWERING 1;Oryzabase Gene Symbol Synonym(s)=OsLFL1%2C OsSTA29%2C STA29;Oryzabase Gene Name Synonym(s)=B3 domain-containing protein LFL1%2C LEC2 and FUSCA3-like protein 1%2C LEAFY COTYLEDON 2 and FUSCA 3-LIKE 1%2C LEC2/FUS3-LIKE 1;Note=B3 DNA-binding domain-containing transcription factor%2C Flowering time regulation%2C Repression of flowering activator Ehd1 and its downstream genes by binding to the promoter of the Ehd1 gene;Transcript_evidence=EF521182 (Zhonghua 11),AK109920 (truncated);ORF_evidence=A4LBC0;GO=Molecular Function: DNA binding (GO:0003677);InterPro=DNA-binding pseudobarrel domain (IPR015300),B3 DNA binding domain (IPR003340);NIAS_FLcDNA=002-150-E10 (truncated);Manual Curation=July 6%2C 2017;Literature_PMID=17913295,17592727;Oryzabase=7152;Expression=AK109920;TENOR=Os01t0713600-01;KEGG=Os01t0713600-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	29637792	29637838	.	+	.	Parent=Os01t0713600-01
Chr01	irgsp1_rep	CDS	29637839	29638351	.	+	0	Parent=Os01t0713600-01
Chr01	irgsp1_rep	CDS	29639963	29640049	.	+	0	Parent=Os01t0713600-01
Chr01	irgsp1_rep	CDS	29640658	29640761	.	+	0	Parent=Os01t0713600-01
Chr01	irgsp1_rep	CDS	29641989	29642035	.	+	1	Parent=Os01t0713600-01
Chr01	irgsp1_rep	CDS	29642123	29642199	.	+	2	Parent=Os01t0713600-01
Chr01	irgsp1_rep	CDS	29642279	29642659	.	+	0	Parent=Os01t0713600-01
Chr01	irgsp1_rep	three_prime_UTR	29642660	29642862	.	+	.	Parent=Os01t0713600-01
Chr01	irgsp1_rep	mRNA	29645867	29649037	.	+	.	ID=Os01t0713800-00;Name=Os01t0713800-00;Locus_id=Os01g0713800;Note=Similar to RNA binding.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_196459.1 (RefSeq);InterPro=Ribosomal RNA assembly KRR1 (IPR024166);TENOR=Os01t0713800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	29645867	29646075	.	+	0	Parent=Os01t0713800-00
Chr01	irgsp1_rep	CDS	29646354	29646492	.	+	1	Parent=Os01t0713800-00
Chr01	irgsp1_rep	CDS	29646687	29646755	.	+	0	Parent=Os01t0713800-00
Chr01	irgsp1_rep	CDS	29647393	29647449	.	+	0	Parent=Os01t0713800-00
Chr01	irgsp1_rep	CDS	29647700	29647804	.	+	0	Parent=Os01t0713800-00
Chr01	irgsp1_rep	CDS	29647901	29647983	.	+	0	Parent=Os01t0713800-00
Chr01	irgsp1_rep	CDS	29648076	29648157	.	+	1	Parent=Os01t0713800-00
Chr01	irgsp1_rep	CDS	29648503	29648646	.	+	0	Parent=Os01t0713800-00
Chr01	irgsp1_rep	CDS	29648730	29648810	.	+	0	Parent=Os01t0713800-00
Chr01	irgsp1_rep	CDS	29648909	29649037	.	+	0	Parent=Os01t0713800-00
Chr01	irgsp1_rep	mRNA	29670703	29675358	.	-	.	ID=Os01t0713900-01;Name=Os01t0713900-01;Locus_id=Os01g0713900;Note=Similar to Myosin.;Transcript_evidence=AK101864 (DDBJ%2C Best hit);ORF_evidence=O24518 (UniProt);GO=Cellular Component: myosin complex (GO:0016459),Molecular Function: motor activity (GO:0003774),Molecular Function: ATP binding (GO:0005524);InterPro=Myosin head%2C motor domain (IPR001609),Myosin%2C N-terminal%2C SH3-like (IPR004009);NIAS_FLcDNA=J033070C12;Oryzabase=23569;Expression=AK101864;TENOR=Os01t0713900-01;KEGG=Os01t0713900-01
Chr01	irgsp1_rep	five_prime_UTR	29675027	29675358	.	-	.	Parent=Os01t0713900-01
Chr01	irgsp1_rep	CDS	29675024	29675026	.	-	0	Parent=Os01t0713900-01
Chr01	irgsp1_rep	CDS	29673985	29674113	.	-	0	Parent=Os01t0713900-01
Chr01	irgsp1_rep	CDS	29673266	29673409	.	-	0	Parent=Os01t0713900-01
Chr01	irgsp1_rep	CDS	29673031	29673176	.	-	0	Parent=Os01t0713900-01
Chr01	irgsp1_rep	CDS	29672768	29672924	.	-	1	Parent=Os01t0713900-01
Chr01	irgsp1_rep	CDS	29672563	29672621	.	-	0	Parent=Os01t0713900-01
Chr01	irgsp1_rep	CDS	29671304	29671463	.	-	1	Parent=Os01t0713900-01
Chr01	irgsp1_rep	CDS	29671056	29671205	.	-	0	Parent=Os01t0713900-01
Chr01	irgsp1_rep	CDS	29670841	29670977	.	-	0	Parent=Os01t0713900-01
Chr01	irgsp1_rep	CDS	29670703	29670733	.	-	1	Parent=Os01t0713900-01
Chr01	irgsp1_rep	mRNA	29679124	29680754	.	-	.	ID=Os01t0714100-01;Name=Os01t0714100-01;Locus_id=Os01g0714100;Note=Conserved hypothetical protein.;Transcript_evidence=AK060399 (DDBJ%2C Best hit);ORF_evidence=Q5N8D0 (UniProt);NIAS_FLcDNA=001-010-B08;Expression=AK060399;TENOR=Os01t0714100-01;KEGG=Os01t0714100-01
Chr01	irgsp1_rep	five_prime_UTR	29680737	29680754	.	-	.	Parent=Os01t0714100-01
Chr01	irgsp1_rep	CDS	29680684	29680736	.	-	0	Parent=Os01t0714100-01
Chr01	irgsp1_rep	CDS	29679463	29680597	.	-	1	Parent=Os01t0714100-01
Chr01	irgsp1_rep	three_prime_UTR	29679124	29679462	.	-	.	Parent=Os01t0714100-01
Chr01	irgsp1_rep	mRNA	29688208	29688640	.	-	.	ID=Os01t0714225-00;Name=Os01t0714225-00;Locus_id=Os01g0714225;Note=Hypothetical protein.;Transcript_evidence=EU976224 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0714225-00
Chr01	irgsp1_rep	five_prime_UTR	29688596	29688640	.	-	.	Parent=Os01t0714225-00
Chr01	irgsp1_rep	CDS	29688208	29688595	.	-	0	Parent=Os01t0714225-00
Chr01	irgsp1_rep	mRNA	29708354	29709366	.	+	.	ID=Os01t0714600-01;Name=Os01t0714600-01;Locus_id=Os01g0714600;Note=Similar to cDNA clone:J023088C01%2C full insert sequence.;Transcript_evidence=AK059855 (DDBJ%2C Best hit);ORF_evidence=B7EQF1 (UniProt);NIAS_FLcDNA=006-206-H11;Oryzabase=20202;Expression=AK059855;TENOR=Os01t0714600-01;KEGG=Os01t0714600-01
Chr01	irgsp1_rep	five_prime_UTR	29708354	29708416	.	+	.	Parent=Os01t0714600-01
Chr01	irgsp1_rep	CDS	29708417	29708923	.	+	0	Parent=Os01t0714600-01
Chr01	irgsp1_rep	three_prime_UTR	29708924	29709366	.	+	.	Parent=Os01t0714600-01
Chr01	irgsp1_rep	mRNA	29720923	29723065	.	-	.	ID=Os01t0714800-01;Name=Os01t0714800-01;Locus_id=Os01g0714800;CGSNL Gene Symbol=WRKY26;CGSNL Gene Name=WRKY GENE 26;Oryzabase Gene Symbol Synonym(s)=OsWRKY26%2C OsWRKY59%2C DLN19%2C OsDLN19;Oryzabase Gene Name Synonym(s)=Rice WRKY gene 26%2C Rice WRKY gene 59%2C DLN repressor 19%2C DLN motif protein 19;Note=WRKY transcription factor 26.;Transcript_evidence=AK108555 (DDBJ%2C Best hit);ORF_evidence=Q6IEM2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);NIAS_FLcDNA=002-144-E10;Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6538;Expression=AK108555;TENOR=Os01t0714800-01;KEGG=Os01t0714800-01
Chr01	irgsp1_rep	five_prime_UTR	29723032	29723065	.	-	.	Parent=Os01t0714800-01
Chr01	irgsp1_rep	CDS	29722655	29723031	.	-	0	Parent=Os01t0714800-01
Chr01	irgsp1_rep	CDS	29722356	29722517	.	-	1	Parent=Os01t0714800-01
Chr01	irgsp1_rep	CDS	29721344	29721542	.	-	1	Parent=Os01t0714800-01
Chr01	irgsp1_rep	three_prime_UTR	29720923	29721343	.	-	.	Parent=Os01t0714800-01
Chr01	irgsp1_rep	mRNA	29730171	29735065	.	-	.	ID=Os01t0714900-01;Name=Os01t0714900-01;Locus_id=Os01g0714900;Oryzabase Gene Symbol Synonym(s)=OsRab7A2;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab7A2;Note=Similar to RAB7A.;Transcript_evidence=AK111495 (DDBJ%2C Best hit);ORF_evidence=Q40211 (UniProt);GO=Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225);NIAS_FLcDNA=J013000E15;Oryzabase=11087;Expression=AK111495;TENOR=Os01t0714900-01;KEGG=Os01t0714900-01
Chr01	irgsp1_rep	five_prime_UTR	29734947	29735065	.	-	.	Parent=Os01t0714900-01
Chr01	irgsp1_rep	CDS	29734891	29734946	.	-	0	Parent=Os01t0714900-01
Chr01	irgsp1_rep	CDS	29734703	29734729	.	-	1	Parent=Os01t0714900-01
Chr01	irgsp1_rep	CDS	29734244	29734343	.	-	1	Parent=Os01t0714900-01
Chr01	irgsp1_rep	CDS	29734001	29734147	.	-	0	Parent=Os01t0714900-01
Chr01	irgsp1_rep	CDS	29731548	29731628	.	-	0	Parent=Os01t0714900-01
Chr01	irgsp1_rep	CDS	29731333	29731478	.	-	0	Parent=Os01t0714900-01
Chr01	irgsp1_rep	CDS	29730421	29730487	.	-	1	Parent=Os01t0714900-01
Chr01	irgsp1_rep	three_prime_UTR	29730171	29730420	.	-	.	Parent=Os01t0714900-01
Chr01	irgsp1_rep	mRNA	29738496	29739447	.	-	.	ID=Os01t0715000-01;Name=Os01t0715000-01;Locus_id=Os01g0715000;Note=Conserved hypothetical protein.;Transcript_evidence=AK108364 (DDBJ%2C Best hit);ORF_evidence=B9GAX4 (UniProt);NIAS_FLcDNA=002-142-D01;TENOR=Os01t0715000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	29739297	29739447	.	-	.	Parent=Os01t0715000-01
Chr01	irgsp1_rep	five_prime_UTR	29738795	29739198	.	-	.	Parent=Os01t0715000-01
Chr01	irgsp1_rep	CDS	29738669	29738794	.	-	0	Parent=Os01t0715000-01
Chr01	irgsp1_rep	three_prime_UTR	29738496	29738668	.	-	.	Parent=Os01t0715000-01
Chr01	irgsp1_rep	mRNA	29736321	29739444	.	-	.	ID=Os01t0715000-02;Name=Os01t0715000-02;Locus_id=Os01g0715000;Note=Conserved hypothetical protein.;Transcript_evidence=AK120627 (DDBJ%2C Best hit);ORF_evidence=B9EZ48 (UniProt);NIAS_FLcDNA=J013153B09;TENOR=Os01t0715000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	29739297	29739444	.	-	0	Parent=Os01t0715000-02
Chr01	irgsp1_rep	CDS	29739131	29739198	.	-	2	Parent=Os01t0715000-02
Chr01	irgsp1_rep	CDS	29738700	29738759	.	-	0	Parent=Os01t0715000-02
Chr01	irgsp1_rep	three_prime_UTR	29738128	29738699	.	-	.	Parent=Os01t0715000-02
Chr01	irgsp1_rep	three_prime_UTR	29737927	29738015	.	-	.	Parent=Os01t0715000-02
Chr01	irgsp1_rep	three_prime_UTR	29737516	29737648	.	-	.	Parent=Os01t0715000-02
Chr01	irgsp1_rep	three_prime_UTR	29737314	29737423	.	-	.	Parent=Os01t0715000-02
Chr01	irgsp1_rep	three_prime_UTR	29737107	29737209	.	-	.	Parent=Os01t0715000-02
Chr01	irgsp1_rep	three_prime_UTR	29736321	29736849	.	-	.	Parent=Os01t0715000-02
Chr01	irgsp1_rep	mRNA	29740123	29742527	.	+	.	ID=Os01t0715100-00;Name=Os01t0715100-00;Locus_id=Os01g0715100;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8A8P1 (UniProt);TENOR=Os01t0715100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	29740123	29740191	.	+	0	Parent=Os01t0715100-00
Chr01	irgsp1_rep	CDS	29740541	29741116	.	+	0	Parent=Os01t0715100-00
Chr01	irgsp1_rep	CDS	29742189	29742527	.	+	0	Parent=Os01t0715100-00
Chr01	irgsp1_rep	mRNA	29750793	29751436	.	-	.	ID=Os01t0715201-01;Name=Os01t0715201-01;Locus_id=Os01g0715201;Note=Hypothetical conserved gene.;Transcript_evidence=AK288648 (DDBJ%2C Best hit);ORF_evidence=Q6ZHL7 (UniProt);NIAS_FLcDNA=J090056K19;TENOR=Os01t0715201-01;KEGG=Os01t0715201-01
Chr01	irgsp1_rep	five_prime_UTR	29751377	29751436	.	-	.	Parent=Os01t0715201-01
Chr01	irgsp1_rep	CDS	29750960	29751376	.	-	0	Parent=Os01t0715201-01
Chr01	irgsp1_rep	three_prime_UTR	29750793	29750959	.	-	.	Parent=Os01t0715201-01
Chr01	irgsp1_rep	mRNA	29760770	29763942	.	+	.	ID=Os01t0715400-01;Name=Os01t0715400-01;Locus_id=Os01g0715400;Oryzabase Gene Symbol Synonym(s)=OsSTA30;Note=Hypothetical conserved gene.;Transcript_evidence=AK070307 (DDBJ%2C Best hit);ORF_evidence=B9EZ51 (UniProt);InterPro=Alpha amylase (IPR015902);NIAS_FLcDNA=J023048B02;Oryzabase=19337;Expression=AK070307;TENOR=Os01t0715400-01;KEGG=Os01t0715400-01
Chr01	irgsp1_rep	five_prime_UTR	29760770	29761040	.	+	.	Parent=Os01t0715400-01
Chr01	irgsp1_rep	CDS	29761041	29761292	.	+	0	Parent=Os01t0715400-01
Chr01	irgsp1_rep	CDS	29761382	29761515	.	+	0	Parent=Os01t0715400-01
Chr01	irgsp1_rep	CDS	29762410	29762464	.	+	1	Parent=Os01t0715400-01
Chr01	irgsp1_rep	CDS	29762631	29762750	.	+	0	Parent=Os01t0715400-01
Chr01	irgsp1_rep	CDS	29763103	29763217	.	+	0	Parent=Os01t0715400-01
Chr01	irgsp1_rep	CDS	29763471	29763844	.	+	2	Parent=Os01t0715400-01
Chr01	irgsp1_rep	three_prime_UTR	29763845	29763942	.	+	.	Parent=Os01t0715400-01
Chr01	irgsp1_rep	mRNA	29760940	29770021	.	+	.	ID=Os01t0715400-02;Name=Os01t0715400-02;Locus_id=Os01g0715400;Oryzabase Gene Symbol Synonym(s)=OsSTA30;Note=Conserved hypothetical protein.;Transcript_evidence=AK065152 (DDBJ%2C Best hit);ORF_evidence=B9EZ51 (UniProt);NIAS_FLcDNA=J013002B10;Oryzabase=19337;TENOR=Os01t0715400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	29760940	29761040	.	+	.	Parent=Os01t0715400-02
Chr01	irgsp1_rep	CDS	29761041	29761292	.	+	0	Parent=Os01t0715400-02
Chr01	irgsp1_rep	CDS	29761382	29761573	.	+	0	Parent=Os01t0715400-02
Chr01	irgsp1_rep	three_prime_UTR	29761574	29762750	.	+	.	Parent=Os01t0715400-02
Chr01	irgsp1_rep	three_prime_UTR	29763103	29763217	.	+	.	Parent=Os01t0715400-02
Chr01	irgsp1_rep	three_prime_UTR	29763471	29763820	.	+	.	Parent=Os01t0715400-02
Chr01	irgsp1_rep	three_prime_UTR	29764645	29765252	.	+	.	Parent=Os01t0715400-02
Chr01	irgsp1_rep	three_prime_UTR	29766534	29766723	.	+	.	Parent=Os01t0715400-02
Chr01	irgsp1_rep	three_prime_UTR	29767211	29767317	.	+	.	Parent=Os01t0715400-02
Chr01	irgsp1_rep	three_prime_UTR	29768048	29768297	.	+	.	Parent=Os01t0715400-02
Chr01	irgsp1_rep	three_prime_UTR	29768732	29768854	.	+	.	Parent=Os01t0715400-02
Chr01	irgsp1_rep	three_prime_UTR	29769214	29769381	.	+	.	Parent=Os01t0715400-02
Chr01	irgsp1_rep	three_prime_UTR	29769484	29770021	.	+	.	Parent=Os01t0715400-02
Chr01	irgsp1_rep	mRNA	29762378	29766397	.	+	.	ID=Os01t0715400-03;Name=Os01t0715400-03;Locus_id=Os01g0715400;Oryzabase Gene Symbol Synonym(s)=OsSTA30;Note=Glycoside hydrolase%2C subgroup%2C catalytic domain domain containing protein.;Transcript_evidence=AK120130 (DDBJ%2C Best hit);ORF_evidence=B9EZ51 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Alpha amylase (IPR015902),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J013026O21;Oryzabase=19337;TENOR=Os01t0715400-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	29762378	29762464	.	+	0	Parent=Os01t0715400-03
Chr01	irgsp1_rep	CDS	29762631	29762750	.	+	0	Parent=Os01t0715400-03
Chr01	irgsp1_rep	CDS	29763103	29763217	.	+	0	Parent=Os01t0715400-03
Chr01	irgsp1_rep	CDS	29763471	29763820	.	+	2	Parent=Os01t0715400-03
Chr01	irgsp1_rep	CDS	29764645	29765289	.	+	0	Parent=Os01t0715400-03
Chr01	irgsp1_rep	three_prime_UTR	29765290	29766397	.	+	.	Parent=Os01t0715400-03
Chr01	irgsp1_rep	mRNA	29770480	29772930	.	+	.	ID=Os01t0715450-00;Name=Os01t0715450-00;Locus_id=Os01g0715450;Note=Non-protein coding transcript.;Transcript_evidence=BT016888 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0715450-00
Chr01	irgsp1_rep	exon	29770480	29770783	.	+	.	Parent=Os01t0715450-00
Chr01	irgsp1_rep	exon	29771011	29771210	.	+	.	Parent=Os01t0715450-00
Chr01	irgsp1_rep	exon	29771298	29771389	.	+	.	Parent=Os01t0715450-00
Chr01	irgsp1_rep	exon	29771530	29771628	.	+	.	Parent=Os01t0715450-00
Chr01	irgsp1_rep	exon	29772838	29772930	.	+	.	Parent=Os01t0715450-00
Chr01	irgsp1_rep	mRNA	29770480	29772931	.	-	.	ID=Os01t0715500-00;Name=Os01t0715500-00;Locus_id=Os01g0715500;Oryzabase Gene Symbol Synonym(s)=OSVDAC4%2C osvdac4%2C OsVDAC4%2C VDAC4;Oryzabase Gene Name Synonym(s)=voltage-dependent anion channel 4%2C voltage-dependent anion-selective channel 4;Note=Similar to voltage-dependent anion channel protein2.;Transcript_evidence=X82149 (DDBJ);ORF_evidence=NP_001104949.1 (RefSeq);GO=Biological Process: anion transport (GO:0006820),Biological Process: regulation of anion transport (GO:0044070),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial outer membrane (GO:0005741),Molecular Function: voltage-gated anion channel activity (GO:0008308);InterPro=Porin%2C eukaryotic type (IPR001925);Oryzabase=14524;TENOR=Os01t0715500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	29772862	29772931	.	-	.	Parent=Os01t0715500-00
Chr01	irgsp1_rep	five_prime_UTR	29771558	29771648	.	-	.	Parent=Os01t0715500-00
Chr01	irgsp1_rep	CDS	29771534	29771557	.	-	0	Parent=Os01t0715500-00
Chr01	irgsp1_rep	CDS	29771308	29771397	.	-	0	Parent=Os01t0715500-00
Chr01	irgsp1_rep	CDS	29771009	29771217	.	-	0	Parent=Os01t0715500-00
Chr01	irgsp1_rep	CDS	29770481	29770787	.	-	1	Parent=Os01t0715500-00
Chr01	irgsp1_rep	three_prime_UTR	29770480	29770480	.	-	.	Parent=Os01t0715500-00
Chr01	irgsp1_rep	mRNA	29775983	29778839	.	-	.	ID=Os01t0715600-00;Name=Os01t0715600-00;Locus_id=Os01g0715600;CGSNL Gene Symbol=PIN8;CGSNL Gene Name=PIN PROTEIN 8;Oryzabase Gene Symbol Synonym(s)=OsPIN8;Note=Similar to auxin efflux carrier component.;Transcript_evidence=BT062760 (DDBJ);ORF_evidence=XP_002305371.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Auxin efflux carrier (IPR004776),Auxin efflux carrier%2C plant type (IPR014024);Oryzabase=8965;TENOR=Os01t0715600-00;KEGG=Os01t0715600-00
Chr01	irgsp1_rep	CDS	29777966	29778839	.	-	0	Parent=Os01t0715600-00
Chr01	irgsp1_rep	CDS	29776801	29776975	.	-	2	Parent=Os01t0715600-00
Chr01	irgsp1_rep	CDS	29776622	29776707	.	-	1	Parent=Os01t0715600-00
Chr01	irgsp1_rep	CDS	29776347	29776504	.	-	2	Parent=Os01t0715600-00
Chr01	irgsp1_rep	CDS	29776175	29776251	.	-	0	Parent=Os01t0715600-00
Chr01	irgsp1_rep	CDS	29775995	29776073	.	-	1	Parent=Os01t0715600-00
Chr01	irgsp1_rep	three_prime_UTR	29775983	29775994	.	-	.	Parent=Os01t0715600-00
Chr01	irgsp1_rep	mRNA	29781295	29783199	.	+	.	ID=Os01t0715700-00;Name=Os01t0715700-00;Locus_id=Os01g0715700;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK373046 (DDBJ);ORF_evidence=NP_001044065.2 (RefSeq);InterPro=Pentatricopeptide repeat (IPR002885);TENOR=Os01t0715700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	29781295	29783148	.	+	0	Parent=Os01t0715700-00
Chr01	irgsp1_rep	three_prime_UTR	29783149	29783199	.	+	.	Parent=Os01t0715700-00
Chr01	irgsp1_rep	mRNA	29783548	29785955	.	-	.	ID=Os01t0715800-01;Name=Os01t0715800-01;Locus_id=Os01g0715800;Note=Conserved hypothetical protein.;Transcript_evidence=AK063369 (DDBJ%2C Best hit);ORF_evidence=A2WUG1 (UniProt);NIAS_FLcDNA=001-114-E01;Expression=AK063369;TENOR=Os01t0715800-01;KEGG=Os01t0715800-01
Chr01	irgsp1_rep	five_prime_UTR	29785894	29785955	.	-	.	Parent=Os01t0715800-01
Chr01	irgsp1_rep	CDS	29785501	29785893	.	-	0	Parent=Os01t0715800-01
Chr01	irgsp1_rep	CDS	29785166	29785390	.	-	0	Parent=Os01t0715800-01
Chr01	irgsp1_rep	three_prime_UTR	29785165	29785165	.	-	.	Parent=Os01t0715800-01
Chr01	irgsp1_rep	three_prime_UTR	29783548	29784113	.	-	.	Parent=Os01t0715800-01
Chr01	irgsp1_rep	mRNA	29786136	29788237	.	-	.	ID=Os01t0715900-01;Name=Os01t0715900-01;Locus_id=Os01g0715900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK106507 (DDBJ%2C Best hit);ORF_evidence=B6U738 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-105-G05;Expression=AK106507;TENOR=Os01t0715900-01;KEGG=Os01t0715900-01
Chr01	irgsp1_rep	five_prime_UTR	29788069	29788237	.	-	.	Parent=Os01t0715900-01
Chr01	irgsp1_rep	CDS	29786242	29788068	.	-	0	Parent=Os01t0715900-01
Chr01	irgsp1_rep	three_prime_UTR	29786136	29786241	.	-	.	Parent=Os01t0715900-01
Chr01	irgsp1_rep	mRNA	29801209	29806870	.	-	.	ID=Os01t0716200-01;Name=Os01t0716200-01;Locus_id=Os01g0716200;Note=IQ calmodulin-binding region domain containing protein.;Transcript_evidence=AK062106 (DDBJ%2C Best hit);ORF_evidence=B7F668 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);NIAS_FLcDNA=001-045-B02;TENOR=Os01t0716200-01
Chr01	irgsp1_rep	five_prime_UTR	29806707	29806870	.	-	.	Parent=Os01t0716200-01
Chr01	irgsp1_rep	five_prime_UTR	29806208	29806245	.	-	.	Parent=Os01t0716200-01
Chr01	irgsp1_rep	CDS	29806118	29806207	.	-	0	Parent=Os01t0716200-01
Chr01	irgsp1_rep	CDS	29805482	29805727	.	-	0	Parent=Os01t0716200-01
Chr01	irgsp1_rep	CDS	29804911	29805114	.	-	0	Parent=Os01t0716200-01
Chr01	irgsp1_rep	CDS	29803554	29803613	.	-	0	Parent=Os01t0716200-01
Chr01	irgsp1_rep	CDS	29802292	29803381	.	-	0	Parent=Os01t0716200-01
Chr01	irgsp1_rep	CDS	29801381	29801415	.	-	2	Parent=Os01t0716200-01
Chr01	irgsp1_rep	three_prime_UTR	29801209	29801380	.	-	.	Parent=Os01t0716200-01
Chr01	irgsp1_rep	mRNA	29801081	29806532	.	-	.	ID=Os01t0716200-02;Name=Os01t0716200-02;Locus_id=Os01g0716200;Note=Similar to Calmodulin binding protein.;Transcript_evidence=AK120664 (DDBJ%2C Best hit);ORF_evidence=B6TZP2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);NIAS_FLcDNA=J013159J10;Expression=AK120664;TENOR=Os01t0716200-02;KEGG=Os01t0716200-02
Chr01	irgsp1_rep	five_prime_UTR	29806346	29806532	.	-	.	Parent=Os01t0716200-02
Chr01	irgsp1_rep	five_prime_UTR	29805728	29806245	.	-	.	Parent=Os01t0716200-02
Chr01	irgsp1_rep	CDS	29805482	29805727	.	-	0	Parent=Os01t0716200-02
Chr01	irgsp1_rep	CDS	29804911	29805114	.	-	0	Parent=Os01t0716200-02
Chr01	irgsp1_rep	CDS	29803554	29803613	.	-	0	Parent=Os01t0716200-02
Chr01	irgsp1_rep	CDS	29802292	29803381	.	-	0	Parent=Os01t0716200-02
Chr01	irgsp1_rep	CDS	29801381	29801415	.	-	2	Parent=Os01t0716200-02
Chr01	irgsp1_rep	three_prime_UTR	29801081	29801380	.	-	.	Parent=Os01t0716200-02
Chr01	irgsp1_rep	mRNA	29801210	29806811	.	-	.	ID=Os01t0716200-03;Name=Os01t0716200-03;Locus_id=Os01g0716200;Note=IQ calmodulin-binding region domain containing protein.;Transcript_evidence=AK098920 (DDBJ%2C Best hit);ORF_evidence=B7F668 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);NIAS_FLcDNA=J013002N06;TENOR=Os01t0716200-03
Chr01	irgsp1_rep	five_prime_UTR	29806707	29806811	.	-	.	Parent=Os01t0716200-03
Chr01	irgsp1_rep	five_prime_UTR	29806208	29806245	.	-	.	Parent=Os01t0716200-03
Chr01	irgsp1_rep	CDS	29806118	29806207	.	-	0	Parent=Os01t0716200-03
Chr01	irgsp1_rep	CDS	29805482	29805727	.	-	0	Parent=Os01t0716200-03
Chr01	irgsp1_rep	CDS	29804911	29805114	.	-	0	Parent=Os01t0716200-03
Chr01	irgsp1_rep	CDS	29803554	29803613	.	-	0	Parent=Os01t0716200-03
Chr01	irgsp1_rep	CDS	29802292	29803381	.	-	0	Parent=Os01t0716200-03
Chr01	irgsp1_rep	CDS	29801381	29801415	.	-	2	Parent=Os01t0716200-03
Chr01	irgsp1_rep	three_prime_UTR	29801210	29801380	.	-	.	Parent=Os01t0716200-03
Chr01	irgsp1_rep	mRNA	29810721	29812563	.	-	.	ID=Os01t0716300-00;Name=Os01t0716300-00;Locus_id=Os01g0716300;Note=Conserved hypothetical protein.;Transcript_evidence=AK367893 (DDBJ);ORF_evidence=B9EZ55 (UniProt);TENOR=Os01t0716300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	29812469	29812563	.	-	.	Parent=Os01t0716300-00
Chr01	irgsp1_rep	CDS	29812415	29812468	.	-	0	Parent=Os01t0716300-00
Chr01	irgsp1_rep	CDS	29812008	29812317	.	-	0	Parent=Os01t0716300-00
Chr01	irgsp1_rep	CDS	29811267	29811431	.	-	2	Parent=Os01t0716300-00
Chr01	irgsp1_rep	CDS	29810988	29811190	.	-	2	Parent=Os01t0716300-00
Chr01	irgsp1_rep	three_prime_UTR	29810721	29810987	.	-	.	Parent=Os01t0716300-00
Chr01	irgsp1_rep	mRNA	29816823	29819737	.	+	.	ID=Os01t0716400-01;Name=Os01t0716400-01;Locus_id=Os01g0716400;Note=Violaxanthin de-epoxidase family protein.;Transcript_evidence=AK066768 (DDBJ%2C Best hit);ORF_evidence=NP_565520.1 (RefSeq);NIAS_FLcDNA=J013088O12;Expression=AK066768;TENOR=Os01t0716400-01;KEGG=Os01t0716400-01
Chr01	irgsp1_rep	five_prime_UTR	29816823	29816847	.	+	.	Parent=Os01t0716400-01
Chr01	irgsp1_rep	CDS	29816848	29817144	.	+	0	Parent=Os01t0716400-01
Chr01	irgsp1_rep	CDS	29818191	29819489	.	+	0	Parent=Os01t0716400-01
Chr01	irgsp1_rep	three_prime_UTR	29819490	29819737	.	+	.	Parent=Os01t0716400-01
Chr01	irgsp1_rep	mRNA	29820626	29821746	.	-	.	ID=Os01t0716450-00;Name=Os01t0716450-00;Locus_id=Os01g0716450;Note=Hypothetical gene.;Transcript_evidence=BT061101 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0716450-00;KEGG=Os01t0716450-00
Chr01	irgsp1_rep	five_prime_UTR	29821046	29821746	.	-	.	Parent=Os01t0716450-00
Chr01	irgsp1_rep	CDS	29820695	29821045	.	-	0	Parent=Os01t0716450-00
Chr01	irgsp1_rep	three_prime_UTR	29820626	29820694	.	-	.	Parent=Os01t0716450-00
Chr01	irgsp1_rep	mRNA	29820731	29821898	.	+	.	ID=Os01t0716500-01;Name=Os01t0716500-01;Locus_id=Os01g0716500;Note=Methyltransferase type 12 domain containing protein.;Transcript_evidence=AK101454 (DDBJ%2C Best hit);ORF_evidence=B6SM48 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Methyltransferase type 11 (IPR013216);NIAS_FLcDNA=J033040A11;Expression=AK101454;TENOR=Os01t0716500-01;KEGG=Os01t0716500-01
Chr01	irgsp1_rep	five_prime_UTR	29820731	29820797	.	+	.	Parent=Os01t0716500-01
Chr01	irgsp1_rep	CDS	29820798	29820947	.	+	0	Parent=Os01t0716500-01
Chr01	irgsp1_rep	CDS	29821070	29821711	.	+	0	Parent=Os01t0716500-01
Chr01	irgsp1_rep	three_prime_UTR	29821712	29821898	.	+	.	Parent=Os01t0716500-01
Chr01	irgsp1_rep	mRNA	29822146	29822587	.	+	.	ID=Os01t0716550-00;Name=Os01t0716550-00;Locus_id=Os01g0716550;Note=Non-protein coding transcript.;Transcript_evidence=CT834879 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os01t0716550-00
Chr01	irgsp1_rep	exon	29822146	29822187	.	+	.	Parent=Os01t0716550-00
Chr01	irgsp1_rep	exon	29822236	29822587	.	+	.	Parent=Os01t0716550-00
Chr01	irgsp1_rep	mRNA	29830265	29836090	.	+	.	ID=Os01t0716800-01;Name=Os01t0716800-01;Locus_id=Os01g0716800;Note=Endonuclease/exonuclease/phosphatase domain containing protein.;Transcript_evidence=AK101741 (DDBJ%2C Best hit);ORF_evidence=A8IDW2 (UniProt);GO=Molecular Function: inositol or phosphatidylinositol phosphatase activity (GO:0004437);InterPro=Inositol polyphosphate-related phosphatase (IPR000300),Endonuclease/exonuclease/phosphatase (IPR005135);NIAS_FLcDNA=J033061M04;Expression=AK101741;TENOR=Os01t0716800-01;KEGG=Os01t0716800-01
Chr01	irgsp1_rep	five_prime_UTR	29830265	29830320	.	+	.	Parent=Os01t0716800-01
Chr01	irgsp1_rep	CDS	29830321	29830497	.	+	0	Parent=Os01t0716800-01
Chr01	irgsp1_rep	CDS	29830625	29830745	.	+	0	Parent=Os01t0716800-01
Chr01	irgsp1_rep	CDS	29831846	29831917	.	+	2	Parent=Os01t0716800-01
Chr01	irgsp1_rep	CDS	29832312	29832399	.	+	2	Parent=Os01t0716800-01
Chr01	irgsp1_rep	CDS	29832630	29832737	.	+	1	Parent=Os01t0716800-01
Chr01	irgsp1_rep	CDS	29832846	29833648	.	+	1	Parent=Os01t0716800-01
Chr01	irgsp1_rep	CDS	29833956	29834142	.	+	2	Parent=Os01t0716800-01
Chr01	irgsp1_rep	CDS	29834670	29834778	.	+	1	Parent=Os01t0716800-01
Chr01	irgsp1_rep	CDS	29834869	29835011	.	+	0	Parent=Os01t0716800-01
Chr01	irgsp1_rep	CDS	29835559	29835781	.	+	1	Parent=Os01t0716800-01
Chr01	irgsp1_rep	three_prime_UTR	29835782	29836090	.	+	.	Parent=Os01t0716800-01
Chr01	irgsp1_rep	mRNA	29830302	29834045	.	+	.	ID=Os01t0716800-02;Name=Os01t0716800-02;Locus_id=Os01g0716800;Note=Hypothetical conserved gene.;Transcript_evidence=AK101771 (DDBJ%2C Best hit);ORF_evidence=B8A8P7 (UniProt);InterPro=Endonuclease/exonuclease/phosphatase (IPR005135);NIAS_FLcDNA=J033064J05;TENOR=Os01t0716800-02
Chr01	irgsp1_rep	five_prime_UTR	29830302	29830320	.	+	.	Parent=Os01t0716800-02
Chr01	irgsp1_rep	CDS	29830321	29830497	.	+	0	Parent=Os01t0716800-02
Chr01	irgsp1_rep	CDS	29830625	29830745	.	+	0	Parent=Os01t0716800-02
Chr01	irgsp1_rep	CDS	29831846	29831917	.	+	2	Parent=Os01t0716800-02
Chr01	irgsp1_rep	CDS	29832312	29832399	.	+	2	Parent=Os01t0716800-02
Chr01	irgsp1_rep	CDS	29832630	29832737	.	+	1	Parent=Os01t0716800-02
Chr01	irgsp1_rep	CDS	29832846	29833648	.	+	1	Parent=Os01t0716800-02
Chr01	irgsp1_rep	CDS	29833956	29834045	.	+	2	Parent=Os01t0716800-02
Chr01	irgsp1_rep	mRNA	29830608	29835803	.	-	.	ID=Os01t0716900-00;Name=Os01t0716900-00;Locus_id=Os01g0716900;Note=Non-protein coding transcript.;Transcript_evidence=tplb0060n08 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os01t0716900-00
Chr01	irgsp1_rep	exon	29835566	29835803	.	-	.	Parent=Os01t0716900-00
Chr01	irgsp1_rep	exon	29834837	29835016	.	-	.	Parent=Os01t0716900-00
Chr01	irgsp1_rep	exon	29834670	29834750	.	-	.	Parent=Os01t0716900-00
Chr01	irgsp1_rep	exon	29833954	29834142	.	-	.	Parent=Os01t0716900-00
Chr01	irgsp1_rep	exon	29833337	29833646	.	-	.	Parent=Os01t0716900-00
Chr01	irgsp1_rep	exon	29832832	29833181	.	-	.	Parent=Os01t0716900-00
Chr01	irgsp1_rep	exon	29832535	29832718	.	-	.	Parent=Os01t0716900-00
Chr01	irgsp1_rep	exon	29831844	29831905	.	-	.	Parent=Os01t0716900-00
Chr01	irgsp1_rep	exon	29830608	29830745	.	-	.	Parent=Os01t0716900-00
Chr01	irgsp1_rep	mRNA	29842914	29846824	.	-	.	ID=Os01t0717000-01;Name=Os01t0717000-01;Locus_id=Os01g0717000;Note=Similar to GmCK1p (EC 2.7.1.32).;Transcript_evidence=AK071968 (DDBJ%2C Best hit),AK098914 (DDBJ%2C Best hit);ORF_evidence=Q1KL28 (UniProt);GO=Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Choline/ethanolamine kinase (IPR002573),Choline kinase%2C N-terminal (IPR007521),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J013081L11,J013002I15;Expression=AK071968;TENOR=Os01t0717000-01;KEGG=Os01t0717000-01 (EC:2.7.1.32)
Chr01	irgsp1_rep	five_prime_UTR	29846575	29846824	.	-	.	Parent=Os01t0717000-01
Chr01	irgsp1_rep	CDS	29846152	29846574	.	-	0	Parent=Os01t0717000-01
Chr01	irgsp1_rep	CDS	29844832	29844953	.	-	0	Parent=Os01t0717000-01
Chr01	irgsp1_rep	CDS	29844555	29844750	.	-	1	Parent=Os01t0717000-01
Chr01	irgsp1_rep	CDS	29843931	29844048	.	-	0	Parent=Os01t0717000-01
Chr01	irgsp1_rep	CDS	29843777	29843824	.	-	2	Parent=Os01t0717000-01
Chr01	irgsp1_rep	CDS	29843495	29843598	.	-	2	Parent=Os01t0717000-01
Chr01	irgsp1_rep	CDS	29843288	29843383	.	-	0	Parent=Os01t0717000-01
Chr01	irgsp1_rep	three_prime_UTR	29842914	29843287	.	-	.	Parent=Os01t0717000-01
Chr01	irgsp1_rep	mRNA	29845155	29846824	.	-	.	ID=Os01t0717000-02;Name=Os01t0717000-02;Locus_id=Os01g0717000;Note=Similar to Choline kinase.;Transcript_evidence=AK070065 (DDBJ%2C Best hit),AK105151 (DDBJ%2C Best hit);ORF_evidence=C6F1Q5 (UniProt);GO=Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Choline/ethanolamine kinase (IPR002573),Choline kinase%2C N-terminal (IPR007521),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J023041L12,001-103-E05;Expression=AK070065;TENOR=Os01t0717000-02;KEGG=Os01t0717000-02 (EC:2.7.1.32)
Chr01	irgsp1_rep	five_prime_UTR	29846575	29846824	.	-	.	Parent=Os01t0717000-02
Chr01	irgsp1_rep	CDS	29846098	29846574	.	-	0	Parent=Os01t0717000-02
Chr01	irgsp1_rep	three_prime_UTR	29845155	29846097	.	-	.	Parent=Os01t0717000-02
Chr01	irgsp1_rep	mRNA	29842914	29843812	.	-	.	ID=Os01t0717000-05;Name=Os01t0717000-05;Locus_id=Os01g0717000;Note=Similar to Choline kinase.;Transcript_evidence=AK062152 (DDBJ%2C Best hit);ORF_evidence=Q1KL28 (UniProt);GO=Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009);NIAS_FLcDNA=001-045-H06;Expression=AK062152;TENOR=Os01t0717000-05;KEGG=Os01t0717000-05 (EC:2.7.1.32)
Chr01	irgsp1_rep	five_prime_UTR	29843811	29843812	.	-	.	Parent=Os01t0717000-05
Chr01	irgsp1_rep	CDS	29843777	29843810	.	-	0	Parent=Os01t0717000-05
Chr01	irgsp1_rep	CDS	29843495	29843598	.	-	2	Parent=Os01t0717000-05
Chr01	irgsp1_rep	CDS	29843288	29843383	.	-	0	Parent=Os01t0717000-05
Chr01	irgsp1_rep	three_prime_UTR	29842914	29843287	.	-	.	Parent=Os01t0717000-05
Chr01	irgsp1_rep	mRNA	29869028	29869463	.	+	.	ID=Os01t0717301-00;Name=Os01t0717301-00;Locus_id=Os01g0717301;Note=Conserved hypothetical protein.;Transcript_evidence=AK330151 (DDBJ);ORF_evidence=F2DWX9 (UniProt);TENOR=Os01t0717301-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	29869028	29869300	.	+	0	Parent=Os01t0717301-00
Chr01	irgsp1_rep	three_prime_UTR	29869301	29869463	.	+	.	Parent=Os01t0717301-00
Chr01	irgsp1_rep	mRNA	29874486	29877459	.	+	.	ID=Os01t0717400-01;Name=Os01t0717400-01;Locus_id=Os01g0717400;Oryzabase Gene Symbol Synonym(s)=OsTARL2%2C TARL2;Oryzabase Gene Name Synonym(s)=TRYPTOPHAN AMINOTRANSFERASE RELATED-LIKE 2;Note=EGF-like%2C alliinase domain containing protein.;Transcript_evidence=AK072165 (DDBJ%2C Best hit);ORF_evidence=NP_001149758.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: carbon-sulfur lyase activity (GO:0016846),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=EGF-like%2C alliinase (IPR006947),Allinase%2C C-terminal (IPR006948),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J013134F14;Oryzabase=23327;Expression=AK072165;TENOR=Os01t0717400-01;KEGG=Os01t0717400-01
Chr01	irgsp1_rep	five_prime_UTR	29874486	29874537	.	+	.	Parent=Os01t0717400-01
Chr01	irgsp1_rep	CDS	29874538	29874881	.	+	0	Parent=Os01t0717400-01
Chr01	irgsp1_rep	CDS	29875737	29876037	.	+	1	Parent=Os01t0717400-01
Chr01	irgsp1_rep	CDS	29876134	29876429	.	+	0	Parent=Os01t0717400-01
Chr01	irgsp1_rep	CDS	29876535	29876821	.	+	1	Parent=Os01t0717400-01
Chr01	irgsp1_rep	CDS	29876935	29877164	.	+	2	Parent=Os01t0717400-01
Chr01	irgsp1_rep	three_prime_UTR	29877165	29877459	.	+	.	Parent=Os01t0717400-01
Chr01	irgsp1_rep	mRNA	29875638	29876353	.	-	.	ID=Os01t0717501-00;Name=Os01t0717501-00;Locus_id=Os01g0717501;Note=Hypothetical gene.;Transcript_evidence=CT832177 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os01t0717501-00;KEGG=Os01t0717501-00
Chr01	irgsp1_rep	five_prime_UTR	29876073	29876353	.	-	.	Parent=Os01t0717501-00
Chr01	irgsp1_rep	CDS	29875821	29876072	.	-	0	Parent=Os01t0717501-00
Chr01	irgsp1_rep	three_prime_UTR	29875638	29875820	.	-	.	Parent=Os01t0717501-00
Chr01	irgsp1_rep	mRNA	29878435	29879843	.	-	.	ID=Os01t0717601-00;Name=Os01t0717601-00;Locus_id=Os01g0717601;CGSNL Gene Symbol=SAP13;CGSNL Gene Name=STRESS ASSOCIATED PROTEIN GENE 13;Oryzabase Gene Symbol Synonym(s)=OsSAP13;Oryzabase Gene Name Synonym(s)=stress-associated protein 13;Note=Zinc finger AN1 domain-containing stress-associated protein 13.;Transcript_evidence=Q5JLA7 (UniProt);ORF_evidence=Q5JLA7 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C AN1-type (IPR000058);Oryzabase=18188;TENOR=Os01t0717601-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	29879777	29879843	.	-	0	Parent=Os01t0717601-00
Chr01	irgsp1_rep	CDS	29879378	29879514	.	-	2	Parent=Os01t0717601-00
Chr01	irgsp1_rep	CDS	29878435	29878941	.	-	0	Parent=Os01t0717601-00
Chr01	irgsp1_rep	mRNA	29886897	29887283	.	-	.	ID=Os01t0717650-00;Name=Os01t0717650-00;Locus_id=Os01g0717650;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5JLA6 (UniProt);TENOR=Os01t0717650-00
Chr01	irgsp1_rep	CDS	29886897	29887283	.	-	0	Parent=Os01t0717650-00
Chr01	irgsp1_rep	mRNA	29894029	29898449	.	+	.	ID=Os01t0717700-01;Name=Os01t0717700-01;Locus_id=Os01g0717700;Oryzabase Gene Symbol Synonym(s)=OsTAA1%2C TAA1%2C OsTAA1%3B4%2C TAA1%3B4%2C OsTARL1%2C TARL1;Oryzabase Gene Name Synonym(s)=TRYPTOPHAN AMINOTRANSFERASE RELATED-LIKE 1;Note=EGF-like%2C alliinase domain containing protein.;Transcript_evidence=AK064938 (DDBJ%2C Best hit);ORF_evidence=NP_001149758.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: carbon-sulfur lyase activity (GO:0016846),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=EGF-like%2C alliinase (IPR006947),Allinase%2C C-terminal (IPR006948),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J013000P04;Oryzabase=22771;Expression=AK064938;TENOR=Os01t0717700-01;KEGG=Os01t0717700-01
Chr01	irgsp1_rep	five_prime_UTR	29894029	29894085	.	+	.	Parent=Os01t0717700-01
Chr01	irgsp1_rep	CDS	29894086	29894429	.	+	0	Parent=Os01t0717700-01
Chr01	irgsp1_rep	CDS	29896708	29897008	.	+	1	Parent=Os01t0717700-01
Chr01	irgsp1_rep	CDS	29897128	29897420	.	+	0	Parent=Os01t0717700-01
Chr01	irgsp1_rep	CDS	29897526	29897812	.	+	1	Parent=Os01t0717700-01
Chr01	irgsp1_rep	CDS	29897914	29898143	.	+	2	Parent=Os01t0717700-01
Chr01	irgsp1_rep	three_prime_UTR	29898144	29898449	.	+	.	Parent=Os01t0717700-01
Chr01	irgsp1_rep	mRNA	29904106	29904790	.	-	.	ID=Os01t0718000-01;Name=Os01t0718000-01;Locus_id=Os01g0718000;CGSNL Gene Symbol=SAP2;CGSNL Gene Name=STRESS ASSOCIATED PROTEIN GENE 2;Oryzabase Gene Symbol Synonym(s)=OsSAP2;Oryzabase Gene Name Synonym(s)=stress-associated protein 2;Note=Zinc finger%2C AN1-type domain containing protein.;Transcript_evidence=AK111476 (DDBJ%2C Best hit);ORF_evidence=Q942F8 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C AN1-type (IPR000058),Zinc finger%2C A20-type (IPR002653);NIAS_FLcDNA=002-185-A01;Oryzabase=18180;Expression=AK111476;TENOR=Os01t0718000-01;KEGG=Os01t0718000-01
Chr01	irgsp1_rep	five_prime_UTR	29904726	29904790	.	-	.	Parent=Os01t0718000-01
Chr01	irgsp1_rep	CDS	29904279	29904725	.	-	0	Parent=Os01t0718000-01
Chr01	irgsp1_rep	three_prime_UTR	29904106	29904278	.	-	.	Parent=Os01t0718000-01
Chr01	irgsp1_rep	mRNA	29927596	29931452	.	-	.	ID=Os01t0718300-01;Name=Os01t0718300-01;Locus_id=Os01g0718300;RAP-DB Gene Symbol Synonym(s)=D61%2C d61*%2C dwf42%2C d61%2C OsBRI1%2C OSBRI1%2C BRI1%2C Os BRI1%2C Osbri1;RAP-DB Gene Name Synonym(s)=DWARF 61%2C dm-type dwarf%2C dwarf-61%2C DWARF61%2C BRASSINOSTEROID INSENSITIVE 1%2C BR receptor BRASSINOSTEROID INSENSITIVE1%2C BRASSINOSTEROID-INSENSITIVE1%2C brassinosteroid insensitive 1;CGSNL Gene Symbol=D61;CGSNL Gene Name=DWARF 61;Oryzabase Gene Symbol Synonym(s)=d61*%2C dwf42%2C d61%2C OsBRI1%2C OSBRI1%2C BRI1%2C Os BRI1%2C Osbri1;Oryzabase Gene Name Synonym(s)=dm-type dwarf%2C dwarf-61%2C DWARF61%2C BRASSINOSTEROID INSENSITIVE 1%2C BR receptor BRASSINOSTEROID INSENSITIVE1%2C BRASSINOSTEROID-INSENSITIVE1%2C brassinosteroid insensitive 1;Note=Receptor serine/threonine kinase%2C Organ development through controlling cell division and elongation;Transcript_evidence=AK101085;ORF_evidence=Q942F3;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Concanavalin A-like lectin/glucanase domain (IPR013320),Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine/threonine/dual specificity protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J033024I12;Manual Curation=November 16%2C 2009;Literature_PMID=11006334,16407447;Oryzabase=2018;Expression=AK101085;TENOR=Os01t0718300-01;KEGG=Os01t0718300-01 (EC:2.7.1.37)
Chr01	irgsp1_rep	five_prime_UTR	29931333	29931452	.	-	.	Parent=Os01t0718300-01
Chr01	irgsp1_rep	CDS	29927967	29931332	.	-	0	Parent=Os01t0718300-01
Chr01	irgsp1_rep	three_prime_UTR	29927596	29927966	.	-	.	Parent=Os01t0718300-01
Chr01	irgsp1_rep	mRNA	29927628	29931409	.	-	.	ID=Os01t0718300-02;Name=Os01t0718300-02;Locus_id=Os01g0718300;CGSNL Gene Symbol=D61;CGSNL Gene Name=DWARF 61;Oryzabase Gene Symbol Synonym(s)=d61*%2C dwf42%2C d61%2C OsBRI1%2C OSBRI1%2C BRI1%2C Os BRI1%2C Osbri1;Oryzabase Gene Name Synonym(s)=dm-type dwarf%2C dwarf-61%2C DWARF61%2C BRASSINOSTEROID INSENSITIVE 1%2C BR receptor BRASSINOSTEROID INSENSITIVE1%2C BRASSINOSTEROID-INSENSITIVE1%2C brassinosteroid insensitive 1;Note=Similar to Systemin receptor SR160 precursor (EC 2.7.1.37) (Brassinosteroid LRR receptor kinase).;Transcript_evidence=AK073838 (DDBJ%2C Best hit);ORF_evidence=B9EZ61 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033069J12;Oryzabase=2018;Expression=AK073838;TENOR=Os01t0718300-02;KEGG=Os01t0718300-02 (EC:2.7.1.37)
Chr01	irgsp1_rep	five_prime_UTR	29931333	29931409	.	-	.	Parent=Os01t0718300-02
Chr01	irgsp1_rep	CDS	29927967	29931332	.	-	0	Parent=Os01t0718300-02
Chr01	irgsp1_rep	three_prime_UTR	29927628	29927966	.	-	.	Parent=Os01t0718300-02
Chr01	irgsp1_rep	mRNA	29927587	29928585	.	-	.	ID=Os01t0718300-03;Name=Os01t0718300-03;Locus_id=Os01g0718300;CGSNL Gene Symbol=D61;CGSNL Gene Name=DWARF 61;Oryzabase Gene Symbol Synonym(s)=d61*%2C dwf42%2C d61%2C OsBRI1%2C OSBRI1%2C BRI1%2C Os BRI1%2C Osbri1;Oryzabase Gene Name Synonym(s)=dm-type dwarf%2C dwarf-61%2C DWARF61%2C BRASSINOSTEROID INSENSITIVE 1%2C BR receptor BRASSINOSTEROID INSENSITIVE1%2C BRASSINOSTEROID-INSENSITIVE1%2C brassinosteroid insensitive 1;Note=Similar to Brassinosteroid-insensitive 1.;Transcript_evidence=AK121760 (DDBJ%2C Best hit);ORF_evidence=Q0ZA03 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033089P20;Oryzabase=2018;Expression=AK121760;TENOR=Os01t0718300-03;KEGG=Os01t0718300-03
Chr01	irgsp1_rep	five_prime_UTR	29928585	29928585	.	-	.	Parent=Os01t0718300-03
Chr01	irgsp1_rep	CDS	29927967	29928584	.	-	0	Parent=Os01t0718300-03
Chr01	irgsp1_rep	three_prime_UTR	29927587	29927966	.	-	.	Parent=Os01t0718300-03
Chr01	irgsp1_rep	mRNA	29937455	29938094	.	+	.	ID=Os01t0718500-01;Name=Os01t0718500-01;Locus_id=Os01g0718500;Note=Protein of unknown function DUF1070 domain containing protein.;Transcript_evidence=AK111346 (DDBJ%2C Best hit);ORF_evidence=A2WUH8 (UniProt);InterPro=Arabinogalactan peptide%2C AGP (IPR009424);NIAS_FLcDNA=002-181-G02;Expression=AK111346;TENOR=Os01t0718500-01;KEGG=Os01t0718500-01
Chr01	irgsp1_rep	five_prime_UTR	29937455	29937547	.	+	.	Parent=Os01t0718500-01
Chr01	irgsp1_rep	CDS	29937548	29937668	.	+	0	Parent=Os01t0718500-01
Chr01	irgsp1_rep	CDS	29937802	29937875	.	+	2	Parent=Os01t0718500-01
Chr01	irgsp1_rep	three_prime_UTR	29937876	29938094	.	+	.	Parent=Os01t0718500-01
Chr01	irgsp1_rep	mRNA	29944091	29948109	.	+	.	ID=Os01t0718700-00;Name=Os01t0718700-00;Locus_id=Os01g0718700;Note=Similar to predicted protein.;Transcript_evidence=BT069481 (DDBJ);ORF_evidence=A2ZX97 (UniProt);GO=Biological Process: ion transport (GO:0006811),Biological Process: potassium ion transport (GO:0006813),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: ion channel activity (GO:0005216),Molecular Function: voltage-gated potassium channel activity (GO:0005249);InterPro=Cyclic nucleotide-binding domain (IPR000595),Potassium channel%2C voltage-dependent%2C EAG/ELK/ERG (IPR003938),Ion transport (IPR005821),RmlC-like jelly roll fold (IPR014710),Cyclic nucleotide-binding-like (IPR018490);TENOR=Os01t0718700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	29944091	29944320	.	+	0	Parent=Os01t0718700-00
Chr01	irgsp1_rep	CDS	29944681	29944836	.	+	1	Parent=Os01t0718700-00
Chr01	irgsp1_rep	CDS	29946357	29946414	.	+	1	Parent=Os01t0718700-00
Chr01	irgsp1_rep	CDS	29946511	29946828	.	+	0	Parent=Os01t0718700-00
Chr01	irgsp1_rep	CDS	29946903	29947142	.	+	0	Parent=Os01t0718700-00
Chr01	irgsp1_rep	CDS	29947232	29947351	.	+	0	Parent=Os01t0718700-00
Chr01	irgsp1_rep	three_prime_UTR	29947352	29947356	.	+	.	Parent=Os01t0718700-00
Chr01	irgsp1_rep	three_prime_UTR	29947926	29948109	.	+	.	Parent=Os01t0718700-00
Chr01	irgsp1_rep	mRNA	29951353	29952644	.	-	.	ID=Os01t0718900-01;Name=Os01t0718900-01;Locus_id=Os01g0718900;CGSNL Gene Symbol=MSL06;CGSNL Gene Name=MYB/SANT-LIKE 6;Oryzabase Gene Symbol Synonym(s)=OsMSL06%2C MSL6;Oryzabase Gene Name Synonym(s)=Myb/SANT-LIKE 6;Note=MADF domain domain containing protein.;Transcript_evidence=AK287629 (DDBJ%2C Best hit);ORF_evidence=NP_001044079.1 (RefSeq);InterPro=MADF domain (IPR006578);NIAS_FLcDNA=J065072B07;Oryzabase=22949;TENOR=Os01t0718900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	29952600	29952644	.	-	.	Parent=Os01t0718900-01
Chr01	irgsp1_rep	CDS	29951631	29952599	.	-	0	Parent=Os01t0718900-01
Chr01	irgsp1_rep	three_prime_UTR	29951353	29951630	.	-	.	Parent=Os01t0718900-01
Chr01	irgsp1_rep	mRNA	29960694	29963049	.	+	.	ID=Os01t0719000-01;Name=Os01t0719000-01;Locus_id=Os01g0719000;Note=Protein of unknown function DUF581 family protein.;Transcript_evidence=AK073213 (DDBJ%2C Best hit);ORF_evidence=A2WUI2 (UniProt);InterPro=Protein of unknown function DUF581 (IPR007650);NIAS_FLcDNA=J033014N20;Expression=AK073213;TENOR=Os01t0719000-01;KEGG=Os01t0719000-01
Chr01	irgsp1_rep	five_prime_UTR	29960694	29960972	.	+	.	Parent=Os01t0719000-01
Chr01	irgsp1_rep	five_prime_UTR	29961804	29961871	.	+	.	Parent=Os01t0719000-01
Chr01	irgsp1_rep	CDS	29961872	29962539	.	+	0	Parent=Os01t0719000-01
Chr01	irgsp1_rep	CDS	29962646	29962766	.	+	1	Parent=Os01t0719000-01
Chr01	irgsp1_rep	three_prime_UTR	29962767	29963049	.	+	.	Parent=Os01t0719000-01
Chr01	irgsp1_rep	mRNA	29960784	29963065	.	+	.	ID=Os01t0719000-02;Name=Os01t0719000-02;Locus_id=Os01g0719000;Note=Protein of unknown function DUF581 family protein.;Transcript_evidence=AK060700 (DDBJ%2C Best hit);ORF_evidence=A2WUI2 (UniProt);InterPro=Protein of unknown function DUF581 (IPR007650);NIAS_FLcDNA=001-030-F10;Expression=AK060700;TENOR=Os01t0719000-02;KEGG=Os01t0719000-02
Chr01	irgsp1_rep	five_prime_UTR	29960784	29960972	.	+	.	Parent=Os01t0719000-02
Chr01	irgsp1_rep	five_prime_UTR	29961804	29961871	.	+	.	Parent=Os01t0719000-02
Chr01	irgsp1_rep	CDS	29961872	29962539	.	+	0	Parent=Os01t0719000-02
Chr01	irgsp1_rep	CDS	29962646	29962766	.	+	1	Parent=Os01t0719000-02
Chr01	irgsp1_rep	three_prime_UTR	29962767	29963065	.	+	.	Parent=Os01t0719000-02
Chr01	irgsp1_rep	mRNA	29960834	29963054	.	+	.	ID=Os01t0719000-03;Name=Os01t0719000-03;Locus_id=Os01g0719000;Note=Protein of unknown function DUF581 family protein.;Transcript_evidence=AK102023 (DDBJ%2C Best hit);ORF_evidence=A2WUI2 (UniProt);InterPro=Protein of unknown function DUF581 (IPR007650);NIAS_FLcDNA=J033080J22;Expression=AK102023;TENOR=Os01t0719000-03;KEGG=Os01t0719000-03
Chr01	irgsp1_rep	five_prime_UTR	29960834	29960972	.	+	.	Parent=Os01t0719000-03
Chr01	irgsp1_rep	five_prime_UTR	29961804	29961871	.	+	.	Parent=Os01t0719000-03
Chr01	irgsp1_rep	CDS	29961872	29962539	.	+	0	Parent=Os01t0719000-03
Chr01	irgsp1_rep	CDS	29962646	29962766	.	+	1	Parent=Os01t0719000-03
Chr01	irgsp1_rep	three_prime_UTR	29962767	29963054	.	+	.	Parent=Os01t0719000-03
Chr01	irgsp1_rep	mRNA	29967316	29970765	.	-	.	ID=Os01t0719100-01;Name=Os01t0719100-01;Locus_id=Os01g0719100;Oryzabase Gene Symbol Synonym(s)=OsRZFP34%2C OsRFP1%2C RZFP34%2C RFP1;Oryzabase Gene Name Synonym(s)=RING zinc-finger protein 34%2C RING finger protein 1;Note=Similar to RING finger and CHY zinc finger domain-containing protein 1.;Transcript_evidence=AK070809 (DDBJ%2C Best hit);ORF_evidence=NP_001146901.1 (RefSeq);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CHY-type (IPR008913),Zinc finger%2C CTCHY-type (IPR017921);NIAS_FLcDNA=J023072L02;Oryzabase=18178;TENOR=Os01t0719100-01
Chr01	irgsp1_rep	five_prime_UTR	29969294	29970765	.	-	.	Parent=Os01t0719100-01
Chr01	irgsp1_rep	five_prime_UTR	29968744	29969133	.	-	.	Parent=Os01t0719100-01
Chr01	irgsp1_rep	CDS	29968565	29968743	.	-	0	Parent=Os01t0719100-01
Chr01	irgsp1_rep	CDS	29968390	29968477	.	-	1	Parent=Os01t0719100-01
Chr01	irgsp1_rep	CDS	29967618	29967710	.	-	0	Parent=Os01t0719100-01
Chr01	irgsp1_rep	CDS	29967450	29967527	.	-	0	Parent=Os01t0719100-01
Chr01	irgsp1_rep	CDS	29967316	29967359	.	-	0	Parent=Os01t0719100-01
Chr01	irgsp1_rep	mRNA	29965346	29970750	.	-	.	ID=Os01t0719100-02;Name=Os01t0719100-02;Locus_id=Os01g0719100;Oryzabase Gene Symbol Synonym(s)=OsRZFP34%2C OsRFP1%2C RZFP34%2C RFP1;Oryzabase Gene Name Synonym(s)=RING zinc-finger protein 34%2C RING finger protein 1;Note=Similar to PGPD14 protein.;Transcript_evidence=AK062155 (DDBJ%2C Best hit);ORF_evidence=NP_001146901.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C RING-type (IPR001841),Rubredoxin-type Fe(Cys)4 protein (IPR004039),Zinc finger%2C CHY-type (IPR008913),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C CTCHY-type (IPR017921);NIAS_FLcDNA=001-045-H12;Oryzabase=18178;Expression=AK062155;TENOR=Os01t0719100-02;KEGG=Os01t0719100-02
Chr01	irgsp1_rep	five_prime_UTR	29970568	29970750	.	-	.	Parent=Os01t0719100-02
Chr01	irgsp1_rep	five_prime_UTR	29968744	29968797	.	-	.	Parent=Os01t0719100-02
Chr01	irgsp1_rep	CDS	29968565	29968743	.	-	0	Parent=Os01t0719100-02
Chr01	irgsp1_rep	CDS	29968390	29968477	.	-	1	Parent=Os01t0719100-02
Chr01	irgsp1_rep	CDS	29967618	29967710	.	-	0	Parent=Os01t0719100-02
Chr01	irgsp1_rep	CDS	29967450	29967527	.	-	0	Parent=Os01t0719100-02
Chr01	irgsp1_rep	CDS	29967316	29967359	.	-	0	Parent=Os01t0719100-02
Chr01	irgsp1_rep	CDS	29967204	29967244	.	-	1	Parent=Os01t0719100-02
Chr01	irgsp1_rep	CDS	29966664	29966746	.	-	2	Parent=Os01t0719100-02
Chr01	irgsp1_rep	CDS	29966445	29966536	.	-	0	Parent=Os01t0719100-02
Chr01	irgsp1_rep	CDS	29966253	29966358	.	-	1	Parent=Os01t0719100-02
Chr01	irgsp1_rep	CDS	29965892	29965996	.	-	0	Parent=Os01t0719100-02
Chr01	irgsp1_rep	three_prime_UTR	29965346	29965891	.	-	.	Parent=Os01t0719100-02
Chr01	irgsp1_rep	mRNA	29969786	29970737	.	-	.	ID=Os01t0719100-03;Name=Os01t0719100-03;Locus_id=Os01g0719100;Oryzabase Gene Symbol Synonym(s)=OsRZFP34%2C OsRFP1%2C RZFP34%2C RFP1;Oryzabase Gene Name Synonym(s)=RING zinc-finger protein 34%2C RING finger protein 1;Note=Hypothetical gene.;Transcript_evidence=AK060327 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-008-A03;Oryzabase=18178;TENOR=Os01t0719100-03
Chr01	irgsp1_rep	five_prime_UTR	29970007	29970737	.	-	.	Parent=Os01t0719100-03
Chr01	irgsp1_rep	CDS	29969786	29970006	.	-	0	Parent=Os01t0719100-03
Chr01	irgsp1_rep	mRNA	29965312	29969095	.	-	.	ID=Os01t0719100-04;Name=Os01t0719100-04;Locus_id=Os01g0719100;RAP-DB Gene Symbol Synonym(s)=OsRZFP34%2C OsRFP1;RAP-DB Gene Name Synonym(s)=RING zinc-finger protein 34%2C RING finger protein 1;Oryzabase Gene Symbol Synonym(s)=OsRZFP34%2C OsRFP1%2C RZFP34%2C RFP1;Oryzabase Gene Name Synonym(s)=RING zinc-finger protein 34%2C RING finger protein 1;Note=RING zinc-finger protein%2C Stomata opening;Transcript_evidence=AK068005,HQ324800 (Ilpumbyeo%2C japonica),AY574990;ORF_evidence=Q5JL96 (Ilpumbyeo%2C japonica),Q6PVY8;GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CHY-type (IPR008913),Zinc finger%2C CTCHY-type (IPR017921),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841),Rubredoxin-type fold (IPR004039);NIAS_FLcDNA=J013130E06;Manual Curation=September 18%2C 2015;Literature_PMID=25002225;Oryzabase=18178;Expression=AK068005;TENOR=Os01t0719100-04;KEGG=Os01t0719100-04
Chr01	irgsp1_rep	five_prime_UTR	29968744	29969095	.	-	.	Parent=Os01t0719100-04
Chr01	irgsp1_rep	CDS	29968565	29968743	.	-	0	Parent=Os01t0719100-04
Chr01	irgsp1_rep	CDS	29968390	29968477	.	-	1	Parent=Os01t0719100-04
Chr01	irgsp1_rep	CDS	29967618	29967710	.	-	0	Parent=Os01t0719100-04
Chr01	irgsp1_rep	CDS	29967450	29967527	.	-	0	Parent=Os01t0719100-04
Chr01	irgsp1_rep	CDS	29967316	29967359	.	-	0	Parent=Os01t0719100-04
Chr01	irgsp1_rep	CDS	29967204	29967244	.	-	1	Parent=Os01t0719100-04
Chr01	irgsp1_rep	CDS	29966664	29966746	.	-	2	Parent=Os01t0719100-04
Chr01	irgsp1_rep	CDS	29966445	29966536	.	-	0	Parent=Os01t0719100-04
Chr01	irgsp1_rep	CDS	29966253	29966358	.	-	1	Parent=Os01t0719100-04
Chr01	irgsp1_rep	CDS	29965892	29965996	.	-	0	Parent=Os01t0719100-04
Chr01	irgsp1_rep	three_prime_UTR	29965312	29965891	.	-	.	Parent=Os01t0719100-04
Chr01	irgsp1_rep	mRNA	29965869	29970694	.	+	.	ID=Os01t0719125-00;Name=Os01t0719125-00;Locus_id=Os01g0719125;Note=Hypothetical protein.;Transcript_evidence=tplb0062e08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0719125-00
Chr01	irgsp1_rep	five_prime_UTR	29965869	29965978	.	+	.	Parent=Os01t0719125-00
Chr01	irgsp1_rep	five_prime_UTR	29966233	29966358	.	+	.	Parent=Os01t0719125-00
Chr01	irgsp1_rep	five_prime_UTR	29966445	29966545	.	+	.	Parent=Os01t0719125-00
Chr01	irgsp1_rep	five_prime_UTR	29966674	29966745	.	+	.	Parent=Os01t0719125-00
Chr01	irgsp1_rep	five_prime_UTR	29967203	29967266	.	+	.	Parent=Os01t0719125-00
Chr01	irgsp1_rep	five_prime_UTR	29967433	29967523	.	+	.	Parent=Os01t0719125-00
Chr01	irgsp1_rep	five_prime_UTR	29967612	29967710	.	+	.	Parent=Os01t0719125-00
Chr01	irgsp1_rep	five_prime_UTR	29968390	29968475	.	+	.	Parent=Os01t0719125-00
Chr01	irgsp1_rep	five_prime_UTR	29968563	29968732	.	+	.	Parent=Os01t0719125-00
Chr01	irgsp1_rep	CDS	29968733	29969011	.	+	0	Parent=Os01t0719125-00
Chr01	irgsp1_rep	three_prime_UTR	29969012	29969116	.	+	.	Parent=Os01t0719125-00
Chr01	irgsp1_rep	three_prime_UTR	29969277	29970001	.	+	.	Parent=Os01t0719125-00
Chr01	irgsp1_rep	three_prime_UTR	29970085	29970694	.	+	.	Parent=Os01t0719125-00
Chr01	irgsp1_rep	mRNA	29971297	29971882	.	-	.	ID=Os01t0719150-01;Name=Os01t0719150-01;Locus_id=Os01g0719150;Note=Conserved hypothetical protein.;Transcript_evidence=AK064230 (DDBJ%2C Best hit);ORF_evidence=NP_001173843.1 (RefSeq);NIAS_FLcDNA=002-104-H05;Expression=AK064230;TENOR=Os01t0719150-01;KEGG=Os01t0719150-01
Chr01	irgsp1_rep	five_prime_UTR	29971684	29971882	.	-	.	Parent=Os01t0719150-01
Chr01	irgsp1_rep	CDS	29971450	29971683	.	-	0	Parent=Os01t0719150-01
Chr01	irgsp1_rep	three_prime_UTR	29971297	29971449	.	-	.	Parent=Os01t0719150-01
Chr01	irgsp1_rep	mRNA	29971589	29972035	.	+	.	ID=Os01t0719200-01;Name=Os01t0719200-01;Locus_id=Os01g0719200;Note=Conserved hypothetical protein.;Transcript_evidence=AK105184 (DDBJ%2C Best hit);ORF_evidence=A2WUI4 (UniProt);NIAS_FLcDNA=001-106-B06;Expression=AK105184;TENOR=Os01t0719200-01;KEGG=Os01t0719200-01
Chr01	irgsp1_rep	five_prime_UTR	29971589	29971634	.	+	.	Parent=Os01t0719200-01
Chr01	irgsp1_rep	CDS	29971635	29971836	.	+	0	Parent=Os01t0719200-01
Chr01	irgsp1_rep	CDS	29971907	29971965	.	+	2	Parent=Os01t0719200-01
Chr01	irgsp1_rep	three_prime_UTR	29971966	29972035	.	+	.	Parent=Os01t0719200-01
Chr01	irgsp1_rep	mRNA	29987911	29994075	.	+	.	ID=Os01t0719300-01;Name=Os01t0719300-01;Locus_id=Os01g0719300;CGSNL Gene Symbol=SULTR3%3B6;CGSNL Gene Name=SULPHATE TRANSPORTER 3%3B6;Oryzabase Gene Symbol Synonym(s)=OsSultr3%3B6%2C OsSul3%3B6%2C OsSULTR3%3B6;Oryzabase Gene Name Synonym(s)=sulphate transporter 3%3B6;Note=Similar to Sulfate transporter 3.1 (AST12) (AtST1).;Transcript_evidence=AK121195 (DDBJ%2C Best hit);ORF_evidence=Q6ZZ94 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: sulfate transport (GO:0008272),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: secondary active sulfate transmembrane transporter activity (GO:0008271);InterPro=Sulphate anion transporter (IPR001902),Sulphate transporter/antisigma-factor antagonist STAS (IPR002645),Sulphate transporter (IPR011547),Sulphate anion transporter%2C conserved site (IPR018045);NIAS_FLcDNA=J023086M22;Oryzabase=9325;Expression=AK121195;TENOR=Os01t0719300-01;KEGG=Os01t0719300-01
Chr01	irgsp1_rep	five_prime_UTR	29987911	29988279	.	+	.	Parent=Os01t0719300-01
Chr01	irgsp1_rep	CDS	29988280	29988670	.	+	0	Parent=Os01t0719300-01
Chr01	irgsp1_rep	CDS	29988767	29988974	.	+	2	Parent=Os01t0719300-01
Chr01	irgsp1_rep	CDS	29989116	29989287	.	+	1	Parent=Os01t0719300-01
Chr01	irgsp1_rep	CDS	29991211	29991276	.	+	0	Parent=Os01t0719300-01
Chr01	irgsp1_rep	CDS	29991401	29991514	.	+	0	Parent=Os01t0719300-01
Chr01	irgsp1_rep	CDS	29991623	29991739	.	+	0	Parent=Os01t0719300-01
Chr01	irgsp1_rep	CDS	29991840	29991966	.	+	0	Parent=Os01t0719300-01
Chr01	irgsp1_rep	CDS	29992060	29992346	.	+	2	Parent=Os01t0719300-01
Chr01	irgsp1_rep	CDS	29992444	29992634	.	+	0	Parent=Os01t0719300-01
Chr01	irgsp1_rep	CDS	29992724	29992806	.	+	1	Parent=Os01t0719300-01
Chr01	irgsp1_rep	CDS	29992918	29992994	.	+	2	Parent=Os01t0719300-01
Chr01	irgsp1_rep	CDS	29993472	29993639	.	+	0	Parent=Os01t0719300-01
Chr01	irgsp1_rep	three_prime_UTR	29993640	29994075	.	+	.	Parent=Os01t0719300-01
Chr01	irgsp1_rep	mRNA	29988269	29992636	.	-	.	ID=Os01t0719350-00;Name=Os01t0719350-00;Locus_id=Os01g0719350;Note=Hypothetical protein.;Transcript_evidence=tplb0050b20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0719350-00
Chr01	irgsp1_rep	five_prime_UTR	29992602	29992636	.	-	.	Parent=Os01t0719350-00
Chr01	irgsp1_rep	CDS	29992406	29992601	.	-	0	Parent=Os01t0719350-00
Chr01	irgsp1_rep	CDS	29992086	29992312	.	-	2	Parent=Os01t0719350-00
Chr01	irgsp1_rep	CDS	29991793	29991989	.	-	0	Parent=Os01t0719350-00
Chr01	irgsp1_rep	CDS	29991550	29991583	.	-	1	Parent=Os01t0719350-00
Chr01	irgsp1_rep	three_prime_UTR	29991299	29991549	.	-	.	Parent=Os01t0719350-00
Chr01	irgsp1_rep	three_prime_UTR	29989103	29989262	.	-	.	Parent=Os01t0719350-00
Chr01	irgsp1_rep	three_prime_UTR	29988765	29988960	.	-	.	Parent=Os01t0719350-00
Chr01	irgsp1_rep	three_prime_UTR	29988269	29988668	.	-	.	Parent=Os01t0719350-00
Chr01	irgsp1_rep	mRNA	29995196	29999996	.	+	.	ID=Os01t0719400-01;Name=Os01t0719400-01;Locus_id=Os01g0719400;Note=CASC3/Barentsz eIF4AIII binding domain containing protein.;Transcript_evidence=AK063516 (DDBJ%2C Best hit);ORF_evidence=B9EZ63 (UniProt);InterPro=CASC3/Barentsz eIF4AIII binding (IPR018545);NIAS_FLcDNA=001-116-H01;Expression=AK063516;TENOR=Os01t0719400-01;KEGG=Os01t0719400-01
Chr01	irgsp1_rep	five_prime_UTR	29995196	29995355	.	+	.	Parent=Os01t0719400-01
Chr01	irgsp1_rep	CDS	29995356	29995936	.	+	0	Parent=Os01t0719400-01
Chr01	irgsp1_rep	CDS	29996502	29996634	.	+	1	Parent=Os01t0719400-01
Chr01	irgsp1_rep	CDS	29996749	29997173	.	+	0	Parent=Os01t0719400-01
Chr01	irgsp1_rep	CDS	29997267	29997342	.	+	1	Parent=Os01t0719400-01
Chr01	irgsp1_rep	three_prime_UTR	29997343	29998065	.	+	.	Parent=Os01t0719400-01
Chr01	irgsp1_rep	three_prime_UTR	29998603	29998723	.	+	.	Parent=Os01t0719400-01
Chr01	irgsp1_rep	three_prime_UTR	29999655	29999996	.	+	.	Parent=Os01t0719400-01
Chr01	irgsp1_rep	mRNA	30003535	30005888	.	+	.	ID=Os01t0719600-01;Name=Os01t0719600-01;Locus_id=Os01g0719600;CGSNL Gene Symbol=HMP5;CGSNL Gene Name=HEAVY METAL-ASSOCIATED PROTEIN 5;Oryzabase Gene Symbol Synonym(s)=OsHMP5%2C OsHMP05;Oryzabase Gene Name Synonym(s)=Heavy metal-associated protein 5;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK070988 (DDBJ%2C Best hit);ORF_evidence=NP_001148191.1 (RefSeq);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);NIAS_FLcDNA=J023077M05;Oryzabase=23531;Expression=AK070988;TENOR=Os01t0719600-01;KEGG=Os01t0719600-01
Chr01	irgsp1_rep	five_prime_UTR	30003535	30003766	.	+	.	Parent=Os01t0719600-01
Chr01	irgsp1_rep	CDS	30003767	30003976	.	+	0	Parent=Os01t0719600-01
Chr01	irgsp1_rep	CDS	30004089	30004164	.	+	0	Parent=Os01t0719600-01
Chr01	irgsp1_rep	CDS	30005547	30005689	.	+	2	Parent=Os01t0719600-01
Chr01	irgsp1_rep	three_prime_UTR	30005690	30005888	.	+	.	Parent=Os01t0719600-01
Chr01	irgsp1_rep	mRNA	30011021	30011903	.	+	.	ID=Os01t0719700-00;Name=Os01t0719700-00;Locus_id=Os01g0719700;CGSNL Gene Symbol=ISC36;CGSNL Gene Name=IRON-SULFUR CLUSTER PROTEIN 36;Oryzabase Gene Symbol Synonym(s)=OsISC36;Oryzabase Gene Name Synonym(s)=Iron-sulfur cluster protein 36;Note=Similar to HCF101 (HIGH-CHLOROPHYLL-FLUORESCENCE 101)%3B ATP binding.;Transcript_evidence=AK360193 (DDBJ);ORF_evidence=NP_189086.1 (RefSeq);InterPro=Domain of unknown function%2C DUF971 (IPR010376);Oryzabase=13438;TENOR=Os01t0719700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	30011021	30011287	.	+	0	Parent=Os01t0719700-00
Chr01	irgsp1_rep	CDS	30011463	30011585	.	+	0	Parent=Os01t0719700-00
Chr01	irgsp1_rep	CDS	30011691	30011771	.	+	0	Parent=Os01t0719700-00
Chr01	irgsp1_rep	three_prime_UTR	30011772	30011903	.	+	.	Parent=Os01t0719700-00
Chr01	irgsp1_rep	mRNA	30010144	30015371	.	-	.	ID=Os01t0719800-01;Name=Os01t0719800-01;Locus_id=Os01g0719800;Note=Hypothetical protein.;Transcript_evidence=AK107082 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-121-F12;Expression=AK107082;TENOR=Os01t0719800-01;KEGG=Os01t0719800-01
Chr01	irgsp1_rep	five_prime_UTR	30015207	30015371	.	-	.	Parent=Os01t0719800-01
Chr01	irgsp1_rep	CDS	30014125	30015206	.	-	0	Parent=Os01t0719800-01
Chr01	irgsp1_rep	CDS	30010778	30010880	.	-	1	Parent=Os01t0719800-01
Chr01	irgsp1_rep	three_prime_UTR	30010144	30010777	.	-	.	Parent=Os01t0719800-01
Chr01	irgsp1_rep	mRNA	30013746	30015148	.	+	.	ID=Os01t0719900-00;Name=Os01t0719900-00;Locus_id=Os01g0719900;Note=Similar to predicted protein.;Transcript_evidence=BT069573 (DDBJ);ORF_evidence=NP_001149280.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921);TENOR=Os01t0719900-00;KEGG=Os01t0719900-00
Chr01	irgsp1_rep	CDS	30013746	30013864	.	+	0	Parent=Os01t0719900-00
Chr01	irgsp1_rep	CDS	30014156	30015140	.	+	1	Parent=Os01t0719900-00
Chr01	irgsp1_rep	three_prime_UTR	30015141	30015148	.	+	.	Parent=Os01t0719900-00
Chr01	irgsp1_rep	mRNA	30015934	30017339	.	-	.	ID=Os01t0720000-00;Name=Os01t0720000-00;Locus_id=Os01g0720000;Note=Peptidase A1 domain containing protein.;Transcript_evidence=AK332688 (DDBJ);ORF_evidence=Q8W0E9 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);TENOR=Os01t0720000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	30017275	30017339	.	-	.	Parent=Os01t0720000-00
Chr01	irgsp1_rep	CDS	30015934	30017274	.	-	0	Parent=Os01t0720000-00
Chr01	irgsp1_rep	mRNA	30020954	30021230	.	-	.	ID=Os01t0720200-01;Name=Os01t0720200-01;Locus_id=Os01g0720200;Note=Non-protein coding transcript.;Transcript_evidence=AK058236 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-011-E01;TENOR=Os01t0720200-01
Chr01	irgsp1_rep	exon	30020954	30021230	.	-	.	Parent=Os01t0720200-01
Chr01	irgsp1_rep	mRNA	30021240	30023716	.	-	.	ID=Os01t0720300-00;Name=Os01t0720300-00;Locus_id=Os01g0720300;Note=NADH-ubiquinone oxidoreductase 20 kDa subunit%2C mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-20KD) (CI-20KD).;Transcript_evidence=ab initio prediction;ORF_evidence=B6TDQ5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: NADH dehydrogenase (ubiquinone) activity (GO:0008137),Molecular Function: oxidoreductase activity%2C acting on NADH or NADPH (GO:0016651),Molecular Function: quinone binding (GO:0048038),Molecular Function: 4 iron%2C 4 sulfur cluster binding (GO:0051539);InterPro=NADH:ubiquinone oxidoreductase-like%2C 20kDa subunit (IPR006137),NADH-ubiquinone oxidoreductase%2C 20 Kd subunit (IPR006138),[NiFe]-hydrogenase-3-type complex%2C small subunit/NADH:quinone oxidoreductase%2C subunit NuoB (IPR014406);TENOR=Os01t0720300-00;KEGG=Os01t0720300-00 (EC:1.6.5.3%2C EC:1.6.99.3)
Chr01	irgsp1_rep	CDS	30023352	30023716	.	-	0	Parent=Os01t0720300-00
Chr01	irgsp1_rep	CDS	30021240	30021474	.	-	1	Parent=Os01t0720300-00
Chr01	irgsp1_rep	mRNA	30025366	30026465	.	-	.	ID=Os01t0720400-01;Name=Os01t0720400-01;Locus_id=Os01g0720400;Oryzabase Gene Symbol Synonym(s)=OsACP1%2C ACP1;Oryzabase Gene Name Synonym(s)=acid phosphatase 1;Note=HAD-superfamily subfamily IB hydrolase%2C hypothetical 1 protein.;Transcript_evidence=AK061237 (DDBJ%2C Best hit);ORF_evidence=Q06C47 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: phosphatase activity (GO:0016791);InterPro=HAD-superfamily hydrolase%2C subfamily IB%2C PSPase-like (IPR006383),Pyridoxal phosphate phosphatase-related (IPR006384),Phosphatase PHOSPHO-type (IPR016965),HAD-like domain (IPR023214);NIAS_FLcDNA=006-211-C03;Oryzabase=14682;Expression=AK061237;TENOR=Os01t0720400-01;KEGG=Os01t0720400-01
Chr01	irgsp1_rep	five_prime_UTR	30026382	30026465	.	-	.	Parent=Os01t0720400-01
Chr01	irgsp1_rep	CDS	30025557	30026381	.	-	0	Parent=Os01t0720400-01
Chr01	irgsp1_rep	three_prime_UTR	30025366	30025556	.	-	.	Parent=Os01t0720400-01
Chr01	irgsp1_rep	mRNA	30030998	30032054	.	+	.	ID=Os01t0720500-01;Name=Os01t0720500-01;Locus_id=Os01g0720500;Oryzabase Gene Symbol Synonym(s)=Lhcb1.1 OsLhcb1.1%2C lhcB;Oryzabase Gene Name Synonym(s)=Type I chlorophyll a/b-binding protein%2C light-harvesting chlorophyll a/b-binding protein b1.1;Note=Similar to Type I chlorophyll a/b-binding protein b (Fragment).;Transcript_evidence=AK062725 (DDBJ%2C Best hit),AK058289 (DDBJ%2C Best hit),AK103946 (DDBJ%2C Best hit),AK104176 (DDBJ%2C Best hit);ORF_evidence=B4G143 (UniProt);GO=Biological Process: photosynthesis%2C light harvesting (GO:0009765),Cellular Component: membrane (GO:0016020);InterPro=Chlorophyll A-B binding protein%2C plant (IPR001344),Chlorophyll A-B binding protein (IPR022796),Chlorophyll a/b binding protein domain (IPR023329);NIAS_FLcDNA=001-106-D08,001-013-E06,001-014-B02,006-301-C12;Oryzabase=9607;TENOR=Os01t0720500-01
Chr01	irgsp1_rep	five_prime_UTR	30030998	30031080	.	+	.	Parent=Os01t0720500-01
Chr01	irgsp1_rep	CDS	30031081	30031878	.	+	0	Parent=Os01t0720500-01
Chr01	irgsp1_rep	three_prime_UTR	30031879	30032054	.	+	.	Parent=Os01t0720500-01
Chr01	irgsp1_rep	mRNA	30031920	30032054	.	+	.	ID=Os01t0720500-02;Name=Os01t0720500-02;Locus_id=Os01g0720500;Oryzabase Gene Symbol Synonym(s)=Lhcb1.1 OsLhcb1.1%2C lhcB;Oryzabase Gene Name Synonym(s)=Type I chlorophyll a/b-binding protein%2C light-harvesting chlorophyll a/b-binding protein b1.1;Note=Non-protein coding transcript.;Transcript_evidence=AK060524 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-020-E09;Oryzabase=9607;TENOR=Os01t0720500-02
Chr01	irgsp1_rep	exon	30031920	30032054	.	+	.	Parent=Os01t0720500-02
Chr01	irgsp1_rep	mRNA	30032433	30041425	.	-	.	ID=Os01t0720600-01;Name=Os01t0720600-01;Locus_id=Os01g0720600;CGSNL Gene Symbol=SSIVA;CGSNL Gene Name=SOLUBLE STARCH SYNTHASE IVA;Oryzabase Gene Symbol Synonym(s)=OsSSIVa%2C SSIV-1%2C OsSSIV-1;Oryzabase Gene Name Synonym(s)=SOLUBLE STARCH SYNTHASE IV-1;Note=Similar to Starch synthase IV.;Transcript_evidence=AK100976 (DDBJ%2C Best hit);ORF_evidence=D0TZV4 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Biological Process: glucan biosynthetic process (GO:0009250),Molecular Function: starch synthase activity (GO:0009011);InterPro=Glycosyl transferase%2C family 1 (IPR001296),Glycogen/starch synthases%2C ADP-glucose type (IPR011835),Starch synthase%2C catalytic domain (IPR013534);NIAS_FLcDNA=J023143L08;Oryzabase=8106;Expression=AK100976;TENOR=Os01t0720600-01;KEGG=Os01t0720600-01
Chr01	irgsp1_rep	five_prime_UTR	30041159	30041425	.	-	.	Parent=Os01t0720600-01
Chr01	irgsp1_rep	CDS	30041040	30041158	.	-	0	Parent=Os01t0720600-01
Chr01	irgsp1_rep	CDS	30040310	30040532	.	-	1	Parent=Os01t0720600-01
Chr01	irgsp1_rep	CDS	30039586	30039661	.	-	0	Parent=Os01t0720600-01
Chr01	irgsp1_rep	CDS	30038486	30039488	.	-	2	Parent=Os01t0720600-01
Chr01	irgsp1_rep	CDS	30038122	30038182	.	-	1	Parent=Os01t0720600-01
Chr01	irgsp1_rep	CDS	30036539	30036661	.	-	0	Parent=Os01t0720600-01
Chr01	irgsp1_rep	CDS	30036366	30036441	.	-	0	Parent=Os01t0720600-01
Chr01	irgsp1_rep	CDS	30036101	30036285	.	-	2	Parent=Os01t0720600-01
Chr01	irgsp1_rep	CDS	30035767	30035958	.	-	0	Parent=Os01t0720600-01
Chr01	irgsp1_rep	CDS	30035613	30035681	.	-	0	Parent=Os01t0720600-01
Chr01	irgsp1_rep	CDS	30034839	30035048	.	-	0	Parent=Os01t0720600-01
Chr01	irgsp1_rep	CDS	30033956	30034081	.	-	0	Parent=Os01t0720600-01
Chr01	irgsp1_rep	CDS	30033625	30033774	.	-	0	Parent=Os01t0720600-01
Chr01	irgsp1_rep	CDS	30033252	30033313	.	-	0	Parent=Os01t0720600-01
Chr01	irgsp1_rep	CDS	30033106	30033181	.	-	1	Parent=Os01t0720600-01
Chr01	irgsp1_rep	CDS	30032844	30033020	.	-	0	Parent=Os01t0720600-01
Chr01	irgsp1_rep	three_prime_UTR	30032433	30032843	.	-	.	Parent=Os01t0720600-01
Chr01	irgsp1_rep	mRNA	30032428	30041425	.	-	.	ID=Os01t0720600-02;Name=Os01t0720600-02;Locus_id=Os01g0720600;RAP-DB Gene Symbol Synonym(s)=SSIVA%2C OsSSIVa%2C SSIV-1;RAP-DB Gene Name Synonym(s)=SOLUBLE STARCH SYNTHASE IVA%2C SOLUBLE STARCH SYNTHASE IV-1;CGSNL Gene Symbol=SSIVA;CGSNL Gene Name=SOLUBLE STARCH SYNTHASE IVA;Oryzabase Gene Symbol Synonym(s)=OsSSIVa%2C SSIV-1%2C OsSSIV-1;Oryzabase Gene Name Synonym(s)=SOLUBLE STARCH SYNTHASE IV-1;Note=Starch synthase%2C Starch biosynthesis;Transcript_evidence=AY373257,AK106541;ORF_evidence=Q6UBQ7;GO=Biological Process: biosynthetic process (GO:0009058),Biological Process: glucan biosynthetic process (GO:0009250),Molecular Function: starch synthase activity (GO:0009011);InterPro=Glycogen/starch synthase%2C ADP-glucose type (IPR011835),Starch synthase%2C catalytic domain (IPR013534),Glycosyl transferase%2C family 1 (IPR001296);NIAS_FLcDNA=002-108-E08;Manual Curation=March 1%2C 2010;Literature_PMID=15232694,15642712,21595523;Oryzabase=8106;Expression=AK106541;TENOR=Os01t0720600-02;KEGG=Os01t0720600-02
Chr01	irgsp1_rep	five_prime_UTR	30041159	30041425	.	-	.	Parent=Os01t0720600-02
Chr01	irgsp1_rep	CDS	30041040	30041158	.	-	0	Parent=Os01t0720600-02
Chr01	irgsp1_rep	CDS	30040310	30040532	.	-	1	Parent=Os01t0720600-02
Chr01	irgsp1_rep	CDS	30039586	30039661	.	-	0	Parent=Os01t0720600-02
Chr01	irgsp1_rep	CDS	30038486	30039488	.	-	2	Parent=Os01t0720600-02
Chr01	irgsp1_rep	CDS	30038122	30038173	.	-	1	Parent=Os01t0720600-02
Chr01	irgsp1_rep	CDS	30036539	30036661	.	-	0	Parent=Os01t0720600-02
Chr01	irgsp1_rep	CDS	30036366	30036441	.	-	0	Parent=Os01t0720600-02
Chr01	irgsp1_rep	CDS	30036101	30036285	.	-	2	Parent=Os01t0720600-02
Chr01	irgsp1_rep	CDS	30035767	30035958	.	-	0	Parent=Os01t0720600-02
Chr01	irgsp1_rep	CDS	30035613	30035681	.	-	0	Parent=Os01t0720600-02
Chr01	irgsp1_rep	CDS	30034839	30035048	.	-	0	Parent=Os01t0720600-02
Chr01	irgsp1_rep	CDS	30033956	30034081	.	-	0	Parent=Os01t0720600-02
Chr01	irgsp1_rep	CDS	30033625	30033774	.	-	0	Parent=Os01t0720600-02
Chr01	irgsp1_rep	CDS	30033252	30033313	.	-	0	Parent=Os01t0720600-02
Chr01	irgsp1_rep	CDS	30033106	30033181	.	-	1	Parent=Os01t0720600-02
Chr01	irgsp1_rep	CDS	30032844	30033020	.	-	0	Parent=Os01t0720600-02
Chr01	irgsp1_rep	three_prime_UTR	30032428	30032843	.	-	.	Parent=Os01t0720600-02
Chr01	irgsp1_rep	mRNA	30032455	30041227	.	-	.	ID=Os01t0720600-03;Name=Os01t0720600-03;Locus_id=Os01g0720600;CGSNL Gene Symbol=SSIVA;CGSNL Gene Name=SOLUBLE STARCH SYNTHASE IVA;Oryzabase Gene Symbol Synonym(s)=OsSSIVa%2C SSIV-1%2C OsSSIV-1;Oryzabase Gene Name Synonym(s)=SOLUBLE STARCH SYNTHASE IV-1;Note=Similar to starch synthase IV.;Transcript_evidence=AK066808 (DDBJ%2C Best hit);ORF_evidence=D0TZV4 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Biological Process: glucan biosynthetic process (GO:0009250),Molecular Function: starch synthase activity (GO:0009011);InterPro=Glycosyl transferase%2C family 1 (IPR001296),Glycogen/starch synthases%2C ADP-glucose type (IPR011835),Starch synthase%2C catalytic domain (IPR013534);NIAS_FLcDNA=J013082P16;Oryzabase=8106;Expression=AK066808;TENOR=Os01t0720600-03;KEGG=Os01t0720600-03
Chr01	irgsp1_rep	five_prime_UTR	30041159	30041227	.	-	.	Parent=Os01t0720600-03
Chr01	irgsp1_rep	CDS	30041040	30041158	.	-	0	Parent=Os01t0720600-03
Chr01	irgsp1_rep	CDS	30040310	30040532	.	-	1	Parent=Os01t0720600-03
Chr01	irgsp1_rep	CDS	30039586	30039661	.	-	0	Parent=Os01t0720600-03
Chr01	irgsp1_rep	CDS	30038486	30039488	.	-	2	Parent=Os01t0720600-03
Chr01	irgsp1_rep	CDS	30038122	30038182	.	-	1	Parent=Os01t0720600-03
Chr01	irgsp1_rep	CDS	30036539	30036661	.	-	0	Parent=Os01t0720600-03
Chr01	irgsp1_rep	CDS	30036366	30036441	.	-	0	Parent=Os01t0720600-03
Chr01	irgsp1_rep	CDS	30036101	30036285	.	-	2	Parent=Os01t0720600-03
Chr01	irgsp1_rep	CDS	30035767	30035958	.	-	0	Parent=Os01t0720600-03
Chr01	irgsp1_rep	CDS	30035613	30035681	.	-	0	Parent=Os01t0720600-03
Chr01	irgsp1_rep	CDS	30034839	30035048	.	-	0	Parent=Os01t0720600-03
Chr01	irgsp1_rep	CDS	30033956	30034081	.	-	0	Parent=Os01t0720600-03
Chr01	irgsp1_rep	CDS	30033625	30033774	.	-	0	Parent=Os01t0720600-03
Chr01	irgsp1_rep	CDS	30033248	30033313	.	-	0	Parent=Os01t0720600-03
Chr01	irgsp1_rep	three_prime_UTR	30033106	30033247	.	-	.	Parent=Os01t0720600-03
Chr01	irgsp1_rep	three_prime_UTR	30032455	30033020	.	-	.	Parent=Os01t0720600-03
Chr01	irgsp1_rep	mRNA	30032433	30041425	.	-	.	ID=Os01t0720600-04;Name=Os01t0720600-04;Locus_id=Os01g0720600;RAP-DB Gene Symbol Synonym(s)=SSIVA%2C OsSSIVa%2C SSIV-1;RAP-DB Gene Name Synonym(s)=SOLUBLE STARCH SYNTHASE IVA%2C SOLUBLE STARCH SYNTHASE IV-1;CGSNL Gene Symbol=SSIVA;CGSNL Gene Name=SOLUBLE STARCH SYNTHASE IVA;Oryzabase Gene Symbol Synonym(s)=OsSSIVa%2C SSIV-1%2C OsSSIV-1;Oryzabase Gene Name Synonym(s)=SOLUBLE STARCH SYNTHASE IV-1;Note=Starch synthase%2C Starch biosynthesis;Transcript_evidence=AY100470 (Zhe733%2C indica);ORF_evidence=Q8L8G8;GO=Biological Process: biosynthetic process (GO:0009058),Biological Process: glucan biosynthetic process (GO:0009250),Molecular Function: starch synthase activity (GO:0009011);InterPro=Glycogen/starch synthase%2C ADP-glucose type (IPR011835),Starch synthase%2C catalytic domain (IPR013534),Glycosyl transferase%2C family 1 (IPR001296);Manual Curation=March 1%2C 2010;Literature_PMID=15232694,15642712,21595523;Oryzabase=8106
Chr01	irgsp1_rep	five_prime_UTR	30041159	30041425	.	-	.	Parent=Os01t0720600-04
Chr01	irgsp1_rep	CDS	30041040	30041158	.	-	0	Parent=Os01t0720600-04
Chr01	irgsp1_rep	CDS	30040264	30040532	.	-	1	Parent=Os01t0720600-04
Chr01	irgsp1_rep	CDS	30038486	30039488	.	-	2	Parent=Os01t0720600-04
Chr01	irgsp1_rep	CDS	30038122	30038173	.	-	1	Parent=Os01t0720600-04
Chr01	irgsp1_rep	CDS	30036539	30036661	.	-	0	Parent=Os01t0720600-04
Chr01	irgsp1_rep	CDS	30036366	30036441	.	-	0	Parent=Os01t0720600-04
Chr01	irgsp1_rep	CDS	30036101	30036285	.	-	2	Parent=Os01t0720600-04
Chr01	irgsp1_rep	CDS	30035767	30035958	.	-	0	Parent=Os01t0720600-04
Chr01	irgsp1_rep	CDS	30035613	30035681	.	-	0	Parent=Os01t0720600-04
Chr01	irgsp1_rep	CDS	30034839	30035048	.	-	0	Parent=Os01t0720600-04
Chr01	irgsp1_rep	CDS	30033956	30034081	.	-	0	Parent=Os01t0720600-04
Chr01	irgsp1_rep	CDS	30033625	30033774	.	-	0	Parent=Os01t0720600-04
Chr01	irgsp1_rep	CDS	30033252	30033313	.	-	0	Parent=Os01t0720600-04
Chr01	irgsp1_rep	CDS	30033106	30033181	.	-	1	Parent=Os01t0720600-04
Chr01	irgsp1_rep	CDS	30032844	30033020	.	-	0	Parent=Os01t0720600-04
Chr01	irgsp1_rep	three_prime_UTR	30032433	30032843	.	-	.	Parent=Os01t0720600-04
Chr01	irgsp1_rep	mRNA	30043446	30043783	.	+	.	ID=Os01t0720700-00;Name=Os01t0720700-00;Locus_id=Os01g0720700;Oryzabase Gene Symbol Synonym(s)=OsSAT%2C SAT;Oryzabase Gene Name Synonym(s)=serine acetyl transferase;Note=Similar to satase isoform I.;Transcript_evidence=CT830895 (DDBJ%2C Best hit);ORF_evidence=NP_001105082.1 (RefSeq);Oryzabase=21102;TENOR=Os01t0720700-00;KEGG=Os01t0720700-00
Chr01	irgsp1_rep	CDS	30043446	30043508	.	+	0	Parent=Os01t0720700-00
Chr01	irgsp1_rep	three_prime_UTR	30043509	30043783	.	+	.	Parent=Os01t0720700-00
Chr01	irgsp1_rep	mRNA	30048381	30049982	.	+	.	ID=Os01t0720800-01;Name=Os01t0720800-01;Locus_id=Os01g0720800;Oryzabase Gene Symbol Synonym(s)=OsSTA31;Note=Hypothetical conserved gene.;Transcript_evidence=AK287755 (DDBJ%2C Best hit);ORF_evidence=NP_001172542.1 (RefSeq);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);NIAS_FLcDNA=J065159G15;Oryzabase=19338;TENOR=Os01t0720800-01;KEGG=Os01t0720800-01
Chr01	irgsp1_rep	five_prime_UTR	30048381	30048381	.	+	.	Parent=Os01t0720800-01
Chr01	irgsp1_rep	CDS	30048382	30049707	.	+	0	Parent=Os01t0720800-01
Chr01	irgsp1_rep	three_prime_UTR	30049708	30049982	.	+	.	Parent=Os01t0720800-01
Chr01	irgsp1_rep	mRNA	30055456	30057472	.	-	.	ID=Os01t0720801-01;Name=Os01t0720801-01;Locus_id=Os01g0720801;Note=Hypothetical gene.;Transcript_evidence=AK240850 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065020L08;TENOR=Os01t0720801-01;KEGG=Os01t0720801-01
Chr01	irgsp1_rep	five_prime_UTR	30056350	30057472	.	-	.	Parent=Os01t0720801-01
Chr01	irgsp1_rep	CDS	30056068	30056349	.	-	0	Parent=Os01t0720801-01
Chr01	irgsp1_rep	three_prime_UTR	30055456	30056067	.	-	.	Parent=Os01t0720801-01
Chr01	irgsp1_rep	mRNA	30055567	30057039	.	+	.	ID=Os01t0720900-00;Name=Os01t0720900-00;Locus_id=Os01g0720900;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A2ZXB8 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os01t0720900-00;KEGG=Os01t0720900-00
Chr01	irgsp1_rep	CDS	30055567	30056630	.	+	0	Parent=Os01t0720900-00
Chr01	irgsp1_rep	CDS	30056817	30057039	.	+	1	Parent=Os01t0720900-00
Chr01	irgsp1_rep	mRNA	30059264	30060869	.	+	.	ID=Os01t0721000-01;Name=Os01t0721000-01;Locus_id=Os01g0721000;Oryzabase Gene Symbol Synonym(s)=OsHSP70%2C hsp70;Oryzabase Gene Name Synonym(s)=heat shock protein 70%2C heat-shock protein 70%2C HEAT SHOCK PROTEIN 70KD;Note=NB-ARC domain containing protein.;Transcript_evidence=AK105712 (DDBJ%2C Best hit);ORF_evidence=A2WUK0 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);NIAS_FLcDNA=001-201-E11;Oryzabase=18149;Expression=AK105712;TENOR=Os01t0721000-01;KEGG=Os01t0721000-01
Chr01	irgsp1_rep	five_prime_UTR	30059264	30059280	.	+	.	Parent=Os01t0721000-01
Chr01	irgsp1_rep	CDS	30059281	30060747	.	+	0	Parent=Os01t0721000-01
Chr01	irgsp1_rep	three_prime_UTR	30060748	30060869	.	+	.	Parent=Os01t0721000-01
Chr01	irgsp1_rep	mRNA	30062758	30066302	.	+	.	ID=Os01t0721100-01;Name=Os01t0721100-01;Locus_id=Os01g0721100;Note=Conserved hypothetical protein.;Transcript_evidence=AK065291 (DDBJ%2C Best hit);ORF_evidence=NP_001044097.1 (RefSeq);NIAS_FLcDNA=J013002N02;TENOR=Os01t0721100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	30062758	30063038	.	+	.	Parent=Os01t0721100-01
Chr01	irgsp1_rep	five_prime_UTR	30063770	30064675	.	+	.	Parent=Os01t0721100-01
Chr01	irgsp1_rep	CDS	30064676	30065278	.	+	0	Parent=Os01t0721100-01
Chr01	irgsp1_rep	three_prime_UTR	30065279	30066302	.	+	.	Parent=Os01t0721100-01
Chr01	irgsp1_rep	mRNA	30068602	30070131	.	+	.	ID=Os01t0721200-00;Name=Os01t0721200-00;Locus_id=Os01g0721200;Note=Similar to cDNA clone:J013002N02%2C full insert sequence.;Transcript_evidence=ab initio prediction;ORF_evidence=B7EAQ6 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os01t0721200-00
Chr01	irgsp1_rep	CDS	30068602	30070131	.	+	0	Parent=Os01t0721200-00
Chr01	irgsp1_rep	mRNA	30075624	30077126	.	+	.	ID=Os01t0721300-00;Name=Os01t0721300-00;Locus_id=Os01g0721300;Note=Similar to cDNA clone:J013002N02%2C full insert sequence.;Transcript_evidence=ab initio prediction;ORF_evidence=B7EAQ6 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os01t0721300-00;KEGG=Os01t0721300-00
Chr01	irgsp1_rep	CDS	30075624	30077126	.	+	0	Parent=Os01t0721300-00
Chr01	irgsp1_rep	mRNA	30079674	30081481	.	+	.	ID=Os01t0721400-01;Name=Os01t0721400-01;Locus_id=Os01g0721400;Note=NB-ARC domain containing protein.;Transcript_evidence=AK063472 (DDBJ%2C Best hit);ORF_evidence=B7EAQ6 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);NIAS_FLcDNA=001-116-A09;Expression=AK063472;TENOR=Os01t0721400-01;KEGG=Os01t0721400-01
Chr01	irgsp1_rep	five_prime_UTR	30079674	30079762	.	+	.	Parent=Os01t0721400-01
Chr01	irgsp1_rep	CDS	30079763	30081286	.	+	0	Parent=Os01t0721400-01
Chr01	irgsp1_rep	three_prime_UTR	30081287	30081481	.	+	.	Parent=Os01t0721400-01
Chr01	irgsp1_rep	mRNA	30082783	30085762	.	+	.	ID=Os01t0721500-01;Name=Os01t0721500-01;Locus_id=Os01g0721500;Note=NB-ARC domain containing protein.;Transcript_evidence=AK241666 (DDBJ%2C Best hit);ORF_evidence=B7EAQ6 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);NIAS_FLcDNA=J065192B22;TENOR=Os01t0721500-01;KEGG=Os01t0721500-01
Chr01	irgsp1_rep	five_prime_UTR	30082783	30083991	.	+	.	Parent=Os01t0721500-01
Chr01	irgsp1_rep	CDS	30083992	30085482	.	+	0	Parent=Os01t0721500-01
Chr01	irgsp1_rep	three_prime_UTR	30085483	30085762	.	+	.	Parent=Os01t0721500-01
Chr01	irgsp1_rep	mRNA	30088521	30088871	.	-	.	ID=Os01t0721700-00;Name=Os01t0721700-00;Locus_id=Os01g0721700;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os01t0721700-00;KEGG=Os01t0721700-00
Chr01	irgsp1_rep	CDS	30088521	30088871	.	-	0	Parent=Os01t0721700-00
Chr01	irgsp1_rep	mRNA	30091365	30093186	.	+	.	ID=Os01t0721800-01;Name=Os01t0721800-01;Locus_id=Os01g0721800;Note=Protein kinase-like domain containing protein.;Transcript_evidence=AK120924 (DDBJ%2C Best hit);ORF_evidence=B7EAQ6 (UniProt);NIAS_FLcDNA=J023035N24;Expression=AK120924;TENOR=Os01t0721800-01;KEGG=Os01t0721800-01
Chr01	irgsp1_rep	five_prime_UTR	30091365	30091440	.	+	.	Parent=Os01t0721800-01
Chr01	irgsp1_rep	CDS	30091441	30092964	.	+	0	Parent=Os01t0721800-01
Chr01	irgsp1_rep	three_prime_UTR	30092965	30093186	.	+	.	Parent=Os01t0721800-01
Chr01	irgsp1_rep	mRNA	30095422	30098794	.	-	.	ID=Os01t0721900-01;Name=Os01t0721900-01;Locus_id=Os01g0721900;Note=Similar to Nuclear RNA binding protein B (Fragment).;Transcript_evidence=AK121001 (DDBJ%2C Best hit);ORF_evidence=NP_001148933.1 (RefSeq);InterPro=Hyaluronan/mRNA-binding protein (IPR006861),Stm1%2C N-terminal (IPR019084);NIAS_FLcDNA=J023044L15;Expression=AK121001;TENOR=Os01t0721900-01;KEGG=Os01t0721900-01
Chr01	irgsp1_rep	five_prime_UTR	30098560	30098794	.	-	.	Parent=Os01t0721900-01
Chr01	irgsp1_rep	CDS	30098355	30098559	.	-	0	Parent=Os01t0721900-01
Chr01	irgsp1_rep	CDS	30097606	30097990	.	-	2	Parent=Os01t0721900-01
Chr01	irgsp1_rep	CDS	30097382	30097520	.	-	1	Parent=Os01t0721900-01
Chr01	irgsp1_rep	CDS	30096306	30096464	.	-	0	Parent=Os01t0721900-01
Chr01	irgsp1_rep	CDS	30096164	30096220	.	-	0	Parent=Os01t0721900-01
Chr01	irgsp1_rep	CDS	30095653	30095850	.	-	0	Parent=Os01t0721900-01
Chr01	irgsp1_rep	three_prime_UTR	30095422	30095652	.	-	.	Parent=Os01t0721900-01
Chr01	irgsp1_rep	mRNA	30095511	30096409	.	-	.	ID=Os01t0721900-02;Name=Os01t0721900-02;Locus_id=Os01g0721900;Note=Similar to plasminogen activator inhibitor 1 RNA-binding protein.;Transcript_evidence=AK059581 (DDBJ%2C Best hit);ORF_evidence=NP_001148933.1 (RefSeq);NIAS_FLcDNA=001-030-B03;Expression=AK059581;TENOR=Os01t0721900-02;KEGG=Os01t0721900-02
Chr01	irgsp1_rep	five_prime_UTR	30096408	30096409	.	-	.	Parent=Os01t0721900-02
Chr01	irgsp1_rep	CDS	30096306	30096407	.	-	0	Parent=Os01t0721900-02
Chr01	irgsp1_rep	CDS	30096164	30096220	.	-	0	Parent=Os01t0721900-02
Chr01	irgsp1_rep	CDS	30095653	30095850	.	-	0	Parent=Os01t0721900-02
Chr01	irgsp1_rep	three_prime_UTR	30095511	30095652	.	-	.	Parent=Os01t0721900-02
Chr01	irgsp1_rep	mRNA	30102985	30107341	.	+	.	ID=Os01t0722100-01;Name=Os01t0722100-01;Locus_id=Os01g0722100;Note=Bacterial transferase hexapeptide repeat domain containing protein.;Transcript_evidence=AK066657 (DDBJ%2C Best hit);ORF_evidence=NP_194683.2 (RefSeq);GO=Molecular Function: transferase activity (GO:0016740);InterPro=Bacterial transferase hexapeptide repeat (IPR001451),Trimeric LpxA-like (IPR011004);NIAS_FLcDNA=J013069K22;Expression=AK066657;TENOR=Os01t0722100-01;KEGG=Os01t0722100-01 (EC:2.3.1.129)
Chr01	irgsp1_rep	five_prime_UTR	30102985	30103019	.	+	.	Parent=Os01t0722100-01
Chr01	irgsp1_rep	CDS	30103020	30103083	.	+	0	Parent=Os01t0722100-01
Chr01	irgsp1_rep	CDS	30103187	30103272	.	+	2	Parent=Os01t0722100-01
Chr01	irgsp1_rep	CDS	30103553	30103677	.	+	0	Parent=Os01t0722100-01
Chr01	irgsp1_rep	CDS	30104148	30104256	.	+	1	Parent=Os01t0722100-01
Chr01	irgsp1_rep	CDS	30104438	30104530	.	+	0	Parent=Os01t0722100-01
Chr01	irgsp1_rep	CDS	30104608	30104724	.	+	0	Parent=Os01t0722100-01
Chr01	irgsp1_rep	CDS	30104809	30104892	.	+	0	Parent=Os01t0722100-01
Chr01	irgsp1_rep	CDS	30105553	30105657	.	+	0	Parent=Os01t0722100-01
Chr01	irgsp1_rep	CDS	30106159	30106245	.	+	0	Parent=Os01t0722100-01
Chr01	irgsp1_rep	CDS	30106322	30106435	.	+	0	Parent=Os01t0722100-01
Chr01	irgsp1_rep	three_prime_UTR	30106436	30106486	.	+	.	Parent=Os01t0722100-01
Chr01	irgsp1_rep	three_prime_UTR	30106903	30107341	.	+	.	Parent=Os01t0722100-01
Chr01	irgsp1_rep	mRNA	30117114	30118654	.	+	.	ID=Os01t0722300-01;Name=Os01t0722300-01;Locus_id=Os01g0722300;Note=Myb transcription factor domain containing protein.;Transcript_evidence=AK241370 (DDBJ%2C Best hit);ORF_evidence=Q8S3Z0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J065154C10;TENOR=Os01t0722300-01;KEGG=Os01t0722300-01
Chr01	irgsp1_rep	five_prime_UTR	30117114	30117219	.	+	.	Parent=Os01t0722300-01
Chr01	irgsp1_rep	CDS	30117220	30117355	.	+	0	Parent=Os01t0722300-01
Chr01	irgsp1_rep	CDS	30117678	30117807	.	+	2	Parent=Os01t0722300-01
Chr01	irgsp1_rep	CDS	30117916	30118546	.	+	1	Parent=Os01t0722300-01
Chr01	irgsp1_rep	three_prime_UTR	30118547	30118654	.	+	.	Parent=Os01t0722300-01
Chr01	irgsp1_rep	mRNA	30117870	30118492	.	-	.	ID=Os01t0722425-00;Name=Os01t0722425-00;Locus_id=Os01g0722425;Note=Hypothetical protein.;Transcript_evidence=EU971393 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0722425-00
Chr01	irgsp1_rep	CDS	30117870	30118492	.	-	0	Parent=Os01t0722425-00
Chr01	irgsp1_rep	mRNA	30125573	30128993	.	+	.	ID=Os01t0722550-00;Name=Os01t0722550-00;Locus_id=Os01g0722550;Note=Similar to HAT family dimerisation domain containing protein.;Transcript_evidence=AK122139 (DDBJ%2C Secondary hit);ORF_evidence=Q2QPA8 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677);InterPro=Zinc finger%2C BED-type predicted (IPR003656),Domain of unknown function DUF659 (IPR007021),Ribonuclease H-like (IPR012337);Expression=AK122139;TENOR=Os01t0722550-00;KEGG=Os01t0722550-00
Chr01	irgsp1_rep	five_prime_UTR	30125573	30125861	.	+	.	Parent=Os01t0722550-00
Chr01	irgsp1_rep	CDS	30125862	30125877	.	+	0	Parent=Os01t0722550-00
Chr01	irgsp1_rep	CDS	30126158	30128013	.	+	2	Parent=Os01t0722550-00
Chr01	irgsp1_rep	three_prime_UTR	30128014	30128188	.	+	.	Parent=Os01t0722550-00
Chr01	irgsp1_rep	three_prime_UTR	30128306	30128519	.	+	.	Parent=Os01t0722550-00
Chr01	irgsp1_rep	three_prime_UTR	30128547	30128993	.	+	.	Parent=Os01t0722550-00
Chr01	irgsp1_rep	mRNA	30131389	30135248	.	+	.	ID=Os01t0722700-01;Name=Os01t0722700-01;Locus_id=Os01g0722700;CGSNL Gene Symbol=HXK9;CGSNL Gene Name=HEXOKINASE-9;Oryzabase Gene Symbol Synonym(s)=OsHXK9;Oryzabase Gene Name Synonym(s)=Hexokinase 9;Note=Similar to Hexokinase.;Transcript_evidence=AK069917 (DDBJ%2C Best hit);ORF_evidence=Q2KNB7 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Hexokinase (IPR001312),Hexokinase%2C N-terminal (IPR022672);NIAS_FLcDNA=J023039O11;Oryzabase=9010;Expression=AK069917;TENOR=Os01t0722700-01;KEGG=Os01t0722700-01 (EC:2.7.1.1)
Chr01	irgsp1_rep	five_prime_UTR	30131389	30131435	.	+	.	Parent=Os01t0722700-01
Chr01	irgsp1_rep	CDS	30131436	30131713	.	+	0	Parent=Os01t0722700-01
Chr01	irgsp1_rep	CDS	30132454	30132604	.	+	1	Parent=Os01t0722700-01
Chr01	irgsp1_rep	CDS	30132698	30132880	.	+	0	Parent=Os01t0722700-01
Chr01	irgsp1_rep	CDS	30133076	30133150	.	+	0	Parent=Os01t0722700-01
Chr01	irgsp1_rep	CDS	30133278	30133475	.	+	0	Parent=Os01t0722700-01
Chr01	irgsp1_rep	three_prime_UTR	30133476	30133750	.	+	.	Parent=Os01t0722700-01
Chr01	irgsp1_rep	three_prime_UTR	30133818	30133948	.	+	.	Parent=Os01t0722700-01
Chr01	irgsp1_rep	three_prime_UTR	30134433	30134514	.	+	.	Parent=Os01t0722700-01
Chr01	irgsp1_rep	three_prime_UTR	30134589	30135248	.	+	.	Parent=Os01t0722700-01
Chr01	irgsp1_rep	mRNA	30135889	30137738	.	+	.	ID=Os01t0722800-00;Name=Os01t0722800-00;Locus_id=Os01g0722800;Note=Dimethylmenaquinone methyltransferase family protein.;Transcript_evidence=CT828155 (DDBJ%2C Best hit);ORF_evidence=D6C5C5 (UniProt);GO=Biological Process: regulation of RNA metabolic process (GO:0051252),Molecular Function: ribonuclease inhibitor activity (GO:0008428);InterPro=Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (IPR005493),Ribonuclease E inhibitor RraA (IPR010203);TENOR=Os01t0722800-00;KEGG=Os01t0722800-00
Chr01	irgsp1_rep	five_prime_UTR	30135889	30136047	.	+	.	Parent=Os01t0722800-00
Chr01	irgsp1_rep	five_prime_UTR	30137078	30137090	.	+	.	Parent=Os01t0722800-00
Chr01	irgsp1_rep	CDS	30137091	30137597	.	+	0	Parent=Os01t0722800-00
Chr01	irgsp1_rep	three_prime_UTR	30137598	30137738	.	+	.	Parent=Os01t0722800-00
Chr01	irgsp1_rep	mRNA	30143647	30146827	.	-	.	ID=Os01t0723000-01;Name=Os01t0723000-01;Locus_id=Os01g0723000;Note=Similar to Elongation factor EF-2 (Fragment).;Transcript_evidence=AK073592 (DDBJ%2C Best hit),AK102586 (DDBJ%2C Best hit);ORF_evidence=B6U0S1 (UniProt);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Translation elongation factor EFG/EF2%2C C-terminal (IPR000640),Protein synthesis factor%2C GTP-binding (IPR000795),Translation elongation factor EFTu/EF1A%2C domain 2 (IPR004161),Small GTP-binding protein domain (IPR005225),Translation elongation factor EFG/EF2%2C domain IV (IPR005517),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Elongation factor G/III/V (IPR009022),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=J033048F11,J033098E24;TENOR=Os01t0723000-01
Chr01	irgsp1_rep	five_prime_UTR	30146770	30146827	.	-	.	Parent=Os01t0723000-01
Chr01	irgsp1_rep	five_prime_UTR	30146656	30146664	.	-	.	Parent=Os01t0723000-01
Chr01	irgsp1_rep	CDS	30146565	30146655	.	-	0	Parent=Os01t0723000-01
Chr01	irgsp1_rep	CDS	30146022	30146434	.	-	2	Parent=Os01t0723000-01
Chr01	irgsp1_rep	CDS	30143882	30145939	.	-	0	Parent=Os01t0723000-01
Chr01	irgsp1_rep	three_prime_UTR	30143647	30143881	.	-	.	Parent=Os01t0723000-01
Chr01	irgsp1_rep	mRNA	30143743	30146659	.	+	.	ID=Os01t0723025-00;Name=Os01t0723025-00;Locus_id=Os01g0723025;Note=Hypothetical protein.;Transcript_evidence=tplb0056i14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0723025-00
Chr01	irgsp1_rep	five_prime_UTR	30143743	30144752	.	+	.	Parent=Os01t0723025-00
Chr01	irgsp1_rep	CDS	30144753	30145352	.	+	0	Parent=Os01t0723025-00
Chr01	irgsp1_rep	three_prime_UTR	30145353	30145918	.	+	.	Parent=Os01t0723025-00
Chr01	irgsp1_rep	three_prime_UTR	30146000	30146432	.	+	.	Parent=Os01t0723025-00
Chr01	irgsp1_rep	three_prime_UTR	30146563	30146659	.	+	.	Parent=Os01t0723025-00
Chr01	irgsp1_rep	mRNA	30155680	30157642	.	+	.	ID=Os01t0723100-01;Name=Os01t0723100-01;Locus_id=Os01g0723100;Note=Senescence-associated family protein.;Transcript_evidence=AK059087 (DDBJ%2C Best hit);ORF_evidence=NP_001151530.1 (RefSeq);InterPro=Senescence/spartin-associated (IPR009686);NIAS_FLcDNA=001-022-B06;Expression=AK059087;TENOR=Os01t0723100-01;KEGG=Os01t0723100-01
Chr01	irgsp1_rep	five_prime_UTR	30155680	30155740	.	+	.	Parent=Os01t0723100-01
Chr01	irgsp1_rep	CDS	30155741	30156355	.	+	0	Parent=Os01t0723100-01
Chr01	irgsp1_rep	CDS	30156435	30156575	.	+	0	Parent=Os01t0723100-01
Chr01	irgsp1_rep	CDS	30156663	30156831	.	+	0	Parent=Os01t0723100-01
Chr01	irgsp1_rep	CDS	30156979	30157063	.	+	2	Parent=Os01t0723100-01
Chr01	irgsp1_rep	CDS	30157242	30157401	.	+	1	Parent=Os01t0723100-01
Chr01	irgsp1_rep	three_prime_UTR	30157402	30157642	.	+	.	Parent=Os01t0723100-01
Chr01	irgsp1_rep	mRNA	30157961	30159769	.	-	.	ID=Os01t0723200-01;Name=Os01t0723200-01;Locus_id=Os01g0723200;CGSNL Gene Symbol=RPS24;CGSNL Gene Name=RIBOSOMAL PROTEIN S24;Oryzabase Gene Symbol Synonym(s)=OsRPS24;Oryzabase Gene Name Synonym(s)=Ribosomal protein S24%2C ribosomal protein small subunit 24;Note=Similar to 40S ribosomal protein S19-like.;Transcript_evidence=AK063794 (DDBJ%2C Best hit),AK122140 (DDBJ%2C Best hit);ORF_evidence=A2WUL8 (UniProt);NIAS_FLcDNA=001-121-F01,J033136G18;Oryzabase=17691;TENOR=Os01t0723200-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	30159683	30159769	.	-	.	Parent=Os01t0723200-01
Chr01	irgsp1_rep	CDS	30159599	30159682	.	-	0	Parent=Os01t0723200-01
Chr01	irgsp1_rep	CDS	30159459	30159500	.	-	0	Parent=Os01t0723200-01
Chr01	irgsp1_rep	CDS	30159201	30159371	.	-	0	Parent=Os01t0723200-01
Chr01	irgsp1_rep	CDS	30158363	30158449	.	-	0	Parent=Os01t0723200-01
Chr01	irgsp1_rep	CDS	30158237	30158269	.	-	0	Parent=Os01t0723200-01
Chr01	irgsp1_rep	three_prime_UTR	30157961	30158236	.	-	.	Parent=Os01t0723200-01
Chr01	irgsp1_rep	mRNA	30166017	30171643	.	+	.	ID=Os01t0723400-01;Name=Os01t0723400-01;Locus_id=Os01g0723400;RAP-DB Gene Symbol Synonym(s)=NADP-ME2%2C Os-NADP-ME2%2C Os-NADP-ME2-4;RAP-DB Gene Name Synonym(s)=NADP-MALIC ENZYME 2%2C NADP-malic enzyme2;CGSNL Gene Symbol=NADP-ME2;CGSNL Gene Name=NADP-MALIC ENZYME 2;Oryzabase Gene Symbol Synonym(s)=OscytME1;Oryzabase Gene Name Synonym(s)=cytosolic NADP malic enzyme 1;Note=NADP-malic enzyme%2C Splicing variant;Transcript_evidence=AK099646;ORF_evidence=Q5JNA0;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: malic enzyme activity (GO:0004470),Molecular Function: malate dehydrogenase (decarboxylating) (NAD+) activity (GO:0004471),Molecular Function: NAD binding (GO:0051287);InterPro=Malic oxidoreductase (IPR001891),Malic enzyme%2C N-terminal domain (IPR012301),NAD(P)-binding domain (IPR016040),Malic enzyme%2C NAD-binding (IPR012302),Malic enzyme%2C conserved site (IPR015884);NIAS_FLcDNA=J013064K20;Manual Curation=June 20%2C 2017;Literature_PMID=27126515;Oryzabase=8735;Expression=AK099646;TENOR=Os01t0723400-01;KEGG=Os01t0723400-01 (EC:1.1.1.40);B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	30166017	30166171	.	+	.	Parent=Os01t0723400-01
Chr01	irgsp1_rep	five_prime_UTR	30167252	30167372	.	+	.	Parent=Os01t0723400-01
Chr01	irgsp1_rep	five_prime_UTR	30167457	30167468	.	+	.	Parent=Os01t0723400-01
Chr01	irgsp1_rep	CDS	30167469	30167531	.	+	0	Parent=Os01t0723400-01
Chr01	irgsp1_rep	CDS	30167620	30167771	.	+	0	Parent=Os01t0723400-01
Chr01	irgsp1_rep	CDS	30167846	30167951	.	+	1	Parent=Os01t0723400-01
Chr01	irgsp1_rep	CDS	30168041	30168106	.	+	0	Parent=Os01t0723400-01
Chr01	irgsp1_rep	CDS	30168185	30168280	.	+	0	Parent=Os01t0723400-01
Chr01	irgsp1_rep	CDS	30168366	30168437	.	+	0	Parent=Os01t0723400-01
Chr01	irgsp1_rep	CDS	30168592	30168675	.	+	0	Parent=Os01t0723400-01
Chr01	irgsp1_rep	CDS	30168851	30168949	.	+	0	Parent=Os01t0723400-01
Chr01	irgsp1_rep	CDS	30169584	30169631	.	+	0	Parent=Os01t0723400-01
Chr01	irgsp1_rep	CDS	30169729	30169782	.	+	0	Parent=Os01t0723400-01
Chr01	irgsp1_rep	CDS	30169880	30169978	.	+	0	Parent=Os01t0723400-01
Chr01	irgsp1_rep	CDS	30170064	30170153	.	+	0	Parent=Os01t0723400-01
Chr01	irgsp1_rep	CDS	30170246	30170323	.	+	0	Parent=Os01t0723400-01
Chr01	irgsp1_rep	CDS	30170442	30170516	.	+	0	Parent=Os01t0723400-01
Chr01	irgsp1_rep	CDS	30170609	30170699	.	+	0	Parent=Os01t0723400-01
Chr01	irgsp1_rep	CDS	30171025	30171153	.	+	2	Parent=Os01t0723400-01
Chr01	irgsp1_rep	CDS	30171244	30171332	.	+	2	Parent=Os01t0723400-01
Chr01	irgsp1_rep	three_prime_UTR	30171333	30171643	.	+	.	Parent=Os01t0723400-01
Chr01	irgsp1_rep	mRNA	30166922	30171626	.	+	.	ID=Os01t0723400-02;Name=Os01t0723400-02;Locus_id=Os01g0723400;CGSNL Gene Symbol=NADP-ME2;CGSNL Gene Name=NADP-MALIC ENZYME 2;Oryzabase Gene Symbol Synonym(s)=OscytME1;Oryzabase Gene Name Synonym(s)=cytosolic NADP malic enzyme 1;Note=Similar to Malic enzyme.;Transcript_evidence=AK065560 (DDBJ%2C Best hit);ORF_evidence=B9EZH0 (UniProt);GO=Biological Process: malate metabolic process (GO:0006108),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: malic enzyme activity (GO:0004470),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: malate dehydrogenase (oxaloacetate-decarboxylating) activity (GO:0016619),Molecular Function: metal ion binding (GO:0046872),Molecular Function: NAD binding (GO:0051287);InterPro=Malic oxidoreductase (IPR001891),Malic enzyme%2C N-terminal (IPR012301),Malic enzyme%2C NAD-binding (IPR012302),Malic enzyme%2C conserved site (IPR015884),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013033N12;Oryzabase=8735;Expression=AK065560;TENOR=Os01t0723400-02;KEGG=Os01t0723400-02 (EC:1.1.1.40)
Chr01	irgsp1_rep	five_prime_UTR	30166922	30167216	.	+	.	Parent=Os01t0723400-02
Chr01	irgsp1_rep	CDS	30167217	30167372	.	+	0	Parent=Os01t0723400-02
Chr01	irgsp1_rep	CDS	30167457	30167531	.	+	0	Parent=Os01t0723400-02
Chr01	irgsp1_rep	CDS	30167620	30167771	.	+	0	Parent=Os01t0723400-02
Chr01	irgsp1_rep	CDS	30167846	30167951	.	+	1	Parent=Os01t0723400-02
Chr01	irgsp1_rep	CDS	30168041	30168106	.	+	0	Parent=Os01t0723400-02
Chr01	irgsp1_rep	CDS	30168185	30168280	.	+	0	Parent=Os01t0723400-02
Chr01	irgsp1_rep	CDS	30168366	30168437	.	+	0	Parent=Os01t0723400-02
Chr01	irgsp1_rep	CDS	30168592	30168675	.	+	0	Parent=Os01t0723400-02
Chr01	irgsp1_rep	CDS	30168851	30168949	.	+	0	Parent=Os01t0723400-02
Chr01	irgsp1_rep	CDS	30169584	30169631	.	+	0	Parent=Os01t0723400-02
Chr01	irgsp1_rep	CDS	30169729	30169782	.	+	0	Parent=Os01t0723400-02
Chr01	irgsp1_rep	CDS	30169880	30169978	.	+	0	Parent=Os01t0723400-02
Chr01	irgsp1_rep	CDS	30170064	30170153	.	+	0	Parent=Os01t0723400-02
Chr01	irgsp1_rep	CDS	30170246	30170323	.	+	0	Parent=Os01t0723400-02
Chr01	irgsp1_rep	CDS	30170442	30170516	.	+	0	Parent=Os01t0723400-02
Chr01	irgsp1_rep	CDS	30170609	30170699	.	+	0	Parent=Os01t0723400-02
Chr01	irgsp1_rep	CDS	30171025	30171153	.	+	2	Parent=Os01t0723400-02
Chr01	irgsp1_rep	CDS	30171244	30171332	.	+	2	Parent=Os01t0723400-02
Chr01	irgsp1_rep	three_prime_UTR	30171333	30171626	.	+	.	Parent=Os01t0723400-02
Chr01	irgsp1_rep	mRNA	30166024	30171659	.	+	.	ID=Os01t0723400-03;Name=Os01t0723400-03;Locus_id=Os01g0723400;RAP-DB Gene Symbol Synonym(s)=NADP-ME2%2C NADP-ME<sub>2</sub>%2C Os-NADP-ME2%2C Os-NADP-ME2-3;RAP-DB Gene Name Synonym(s)=NADP-MALIC ENZYME 2%2C NADP-malic enzyme2;CGSNL Gene Symbol=NADP-ME2;CGSNL Gene Name=NADP-MALIC ENZYME 2;Oryzabase Gene Symbol Synonym(s)=OscytME1;Oryzabase Gene Name Synonym(s)=cytosolic NADP malic enzyme 1;Note=NADP-malic enzyme%2C Salt and osmotic stress tolerance%2C Disease resistance;Transcript_evidence=AB053295;ORF_evidence=Q9FRT2;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: malic enzyme activity (GO:0004470),Molecular Function: malate dehydrogenase (decarboxylating) (NAD+) activity (GO:0004471),Molecular Function: NAD binding (GO:0051287);InterPro=Malic oxidoreductase (IPR001891),Malic enzyme%2C N-terminal domain (IPR012301),NAD(P)-binding domain (IPR016040),Malic enzyme%2C NAD-binding (IPR012302),Malic enzyme%2C conserved site (IPR015884);NIAS_FLcDNA=J013131P11 (truncated);Manual Curation=June 20%2C 2017;Literature_PMID=27126515,17245561;Oryzabase=8735;Expression=AK068110;TENOR=Os01t0723400-03;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	30166024	30166531	.	+	.	Parent=Os01t0723400-03
Chr01	irgsp1_rep	CDS	30166532	30166689	.	+	0	Parent=Os01t0723400-03
Chr01	irgsp1_rep	CDS	30167252	30167372	.	+	1	Parent=Os01t0723400-03
Chr01	irgsp1_rep	CDS	30167457	30167531	.	+	0	Parent=Os01t0723400-03
Chr01	irgsp1_rep	CDS	30167620	30167771	.	+	0	Parent=Os01t0723400-03
Chr01	irgsp1_rep	CDS	30167846	30167951	.	+	1	Parent=Os01t0723400-03
Chr01	irgsp1_rep	CDS	30168041	30168106	.	+	0	Parent=Os01t0723400-03
Chr01	irgsp1_rep	CDS	30168185	30168280	.	+	0	Parent=Os01t0723400-03
Chr01	irgsp1_rep	CDS	30168366	30168437	.	+	0	Parent=Os01t0723400-03
Chr01	irgsp1_rep	CDS	30168592	30168675	.	+	0	Parent=Os01t0723400-03
Chr01	irgsp1_rep	CDS	30168851	30168949	.	+	0	Parent=Os01t0723400-03
Chr01	irgsp1_rep	CDS	30169584	30169631	.	+	0	Parent=Os01t0723400-03
Chr01	irgsp1_rep	CDS	30169729	30169782	.	+	0	Parent=Os01t0723400-03
Chr01	irgsp1_rep	CDS	30169880	30169978	.	+	0	Parent=Os01t0723400-03
Chr01	irgsp1_rep	CDS	30170064	30170153	.	+	0	Parent=Os01t0723400-03
Chr01	irgsp1_rep	CDS	30170246	30170323	.	+	0	Parent=Os01t0723400-03
Chr01	irgsp1_rep	CDS	30170442	30170516	.	+	0	Parent=Os01t0723400-03
Chr01	irgsp1_rep	CDS	30170609	30170699	.	+	0	Parent=Os01t0723400-03
Chr01	irgsp1_rep	CDS	30171025	30171153	.	+	2	Parent=Os01t0723400-03
Chr01	irgsp1_rep	CDS	30171244	30171332	.	+	2	Parent=Os01t0723400-03
Chr01	irgsp1_rep	three_prime_UTR	30171333	30171659	.	+	.	Parent=Os01t0723400-03
Chr01	irgsp1_rep	mRNA	30166024	30171659	.	+	.	ID=Os01t0723400-04;Name=Os01t0723400-04;Locus_id=Os01g0723400;RAP-DB Gene Symbol Synonym(s)=NADP-ME2%2C Os-NADP-ME2%2C Os-NADP-ME2-1;RAP-DB Gene Name Synonym(s)=NADP-MALIC ENZYME 2%2C NADP-malic enzyme2;CGSNL Gene Symbol=NADP-ME2;CGSNL Gene Name=NADP-MALIC ENZYME 2;Oryzabase Gene Symbol Synonym(s)=OscytME1;Oryzabase Gene Name Synonym(s)=cytosolic NADP malic enzyme 1;Note=NADP-malic enzyme%2C Splicing variant;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: malic enzyme activity (GO:0004470),Molecular Function: malate dehydrogenase (decarboxylating) (NAD+) activity (GO:0004471),Molecular Function: NAD binding (GO:0051287);InterPro=Malic oxidoreductase (IPR001891),Malic enzyme%2C N-terminal domain (IPR012301),NAD(P)-binding domain (IPR016040),Malic enzyme%2C NAD-binding (IPR012302),Malic enzyme%2C conserved site (IPR015884);Manual Curation=June 29%2C 2017;Literature_PMID=27126515;Oryzabase=8735
Chr01	irgsp1_rep	five_prime_UTR	30166024	30166531	.	+	.	Parent=Os01t0723400-04
Chr01	irgsp1_rep	CDS	30166532	30166689	.	+	0	Parent=Os01t0723400-04
Chr01	irgsp1_rep	CDS	30167252	30167372	.	+	1	Parent=Os01t0723400-04
Chr01	irgsp1_rep	CDS	30167457	30167531	.	+	0	Parent=Os01t0723400-04
Chr01	irgsp1_rep	CDS	30167620	30167771	.	+	0	Parent=Os01t0723400-04
Chr01	irgsp1_rep	CDS	30167846	30167951	.	+	1	Parent=Os01t0723400-04
Chr01	irgsp1_rep	CDS	30168041	30168106	.	+	0	Parent=Os01t0723400-04
Chr01	irgsp1_rep	CDS	30168185	30168280	.	+	0	Parent=Os01t0723400-04
Chr01	irgsp1_rep	CDS	30168366	30168437	.	+	0	Parent=Os01t0723400-04
Chr01	irgsp1_rep	CDS	30168592	30168675	.	+	0	Parent=Os01t0723400-04
Chr01	irgsp1_rep	CDS	30168851	30168949	.	+	0	Parent=Os01t0723400-04
Chr01	irgsp1_rep	CDS	30169584	30169631	.	+	0	Parent=Os01t0723400-04
Chr01	irgsp1_rep	CDS	30169729	30169782	.	+	0	Parent=Os01t0723400-04
Chr01	irgsp1_rep	CDS	30169880	30169978	.	+	0	Parent=Os01t0723400-04
Chr01	irgsp1_rep	CDS	30170064	30170153	.	+	0	Parent=Os01t0723400-04
Chr01	irgsp1_rep	CDS	30170246	30170323	.	+	0	Parent=Os01t0723400-04
Chr01	irgsp1_rep	CDS	30170442	30170516	.	+	0	Parent=Os01t0723400-04
Chr01	irgsp1_rep	CDS	30170609	30170699	.	+	0	Parent=Os01t0723400-04
Chr01	irgsp1_rep	CDS	30171025	30171153	.	+	2	Parent=Os01t0723400-04
Chr01	irgsp1_rep	CDS	30171257	30171495	.	+	2	Parent=Os01t0723400-04
Chr01	irgsp1_rep	three_prime_UTR	30171496	30171659	.	+	.	Parent=Os01t0723400-04
Chr01	irgsp1_rep	mRNA	30166020	30171659	.	+	.	ID=Os01t0723400-05;Name=Os01t0723400-05;Locus_id=Os01g0723400;RAP-DB Gene Symbol Synonym(s)=NADP-ME2%2C Os-NADP-ME2%2C Os-NADP-ME2-2;RAP-DB Gene Name Synonym(s)=NADP-MALIC ENZYME 2%2C NADP-malic enzyme2;CGSNL Gene Symbol=NADP-ME2;CGSNL Gene Name=NADP-MALIC ENZYME 2;Oryzabase Gene Symbol Synonym(s)=OscytME1;Oryzabase Gene Name Synonym(s)=cytosolic NADP malic enzyme 1;Note=NADP-malic enzyme%2C Splicing variant;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: malic enzyme activity (GO:0004470),Molecular Function: malate dehydrogenase (decarboxylating) (NAD+) activity (GO:0004471),Molecular Function: NAD binding (GO:0051287);InterPro=Malic oxidoreductase (IPR001891),Malic enzyme%2C N-terminal domain (IPR012301),NAD(P)-binding domain (IPR016040),Malic enzyme%2C NAD-binding (IPR012302),Malic enzyme%2C conserved site (IPR015884);Manual Curation=June 29%2C 2017;Literature_PMID=27126515;Oryzabase=8735
Chr01	irgsp1_rep	five_prime_UTR	30166020	30166141	.	+	.	Parent=Os01t0723400-05
Chr01	irgsp1_rep	CDS	30166142	30166171	.	+	0	Parent=Os01t0723400-05
Chr01	irgsp1_rep	CDS	30166415	30166689	.	+	0	Parent=Os01t0723400-05
Chr01	irgsp1_rep	CDS	30167252	30167372	.	+	1	Parent=Os01t0723400-05
Chr01	irgsp1_rep	CDS	30167457	30167531	.	+	0	Parent=Os01t0723400-05
Chr01	irgsp1_rep	CDS	30167620	30167771	.	+	0	Parent=Os01t0723400-05
Chr01	irgsp1_rep	CDS	30167846	30167951	.	+	1	Parent=Os01t0723400-05
Chr01	irgsp1_rep	CDS	30168041	30168106	.	+	0	Parent=Os01t0723400-05
Chr01	irgsp1_rep	CDS	30168185	30168280	.	+	0	Parent=Os01t0723400-05
Chr01	irgsp1_rep	CDS	30168366	30168437	.	+	0	Parent=Os01t0723400-05
Chr01	irgsp1_rep	CDS	30168592	30168675	.	+	0	Parent=Os01t0723400-05
Chr01	irgsp1_rep	CDS	30168851	30168949	.	+	0	Parent=Os01t0723400-05
Chr01	irgsp1_rep	CDS	30169584	30169631	.	+	0	Parent=Os01t0723400-05
Chr01	irgsp1_rep	CDS	30169729	30169782	.	+	0	Parent=Os01t0723400-05
Chr01	irgsp1_rep	CDS	30169880	30169978	.	+	0	Parent=Os01t0723400-05
Chr01	irgsp1_rep	CDS	30170064	30170153	.	+	0	Parent=Os01t0723400-05
Chr01	irgsp1_rep	CDS	30170246	30170323	.	+	0	Parent=Os01t0723400-05
Chr01	irgsp1_rep	CDS	30170442	30170516	.	+	0	Parent=Os01t0723400-05
Chr01	irgsp1_rep	CDS	30170609	30170699	.	+	0	Parent=Os01t0723400-05
Chr01	irgsp1_rep	CDS	30171025	30171153	.	+	2	Parent=Os01t0723400-05
Chr01	irgsp1_rep	CDS	30171244	30171332	.	+	2	Parent=Os01t0723400-05
Chr01	irgsp1_rep	three_prime_UTR	30171333	30171659	.	+	.	Parent=Os01t0723400-05
Chr01	irgsp1_rep	mRNA	30166607	30171070	.	-	.	ID=Os01t0723450-00;Name=Os01t0723450-00;Locus_id=Os01g0723450;Note=Non-protein coding transcript.;Transcript_evidence=BT068870 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0723450-00
Chr01	irgsp1_rep	exon	30171023	30171070	.	-	.	Parent=Os01t0723450-00
Chr01	irgsp1_rep	exon	30170570	30170696	.	-	.	Parent=Os01t0723450-00
Chr01	irgsp1_rep	exon	30170236	30170358	.	-	.	Parent=Os01t0723450-00
Chr01	irgsp1_rep	exon	30170047	30170140	.	-	.	Parent=Os01t0723450-00
Chr01	irgsp1_rep	exon	30169899	30169962	.	-	.	Parent=Os01t0723450-00
Chr01	irgsp1_rep	exon	30169739	30169802	.	-	.	Parent=Os01t0723450-00
Chr01	irgsp1_rep	exon	30169592	30169640	.	-	.	Parent=Os01t0723450-00
Chr01	irgsp1_rep	exon	30168856	30168959	.	-	.	Parent=Os01t0723450-00
Chr01	irgsp1_rep	exon	30168560	30168683	.	-	.	Parent=Os01t0723450-00
Chr01	irgsp1_rep	exon	30168175	30168317	.	-	.	Parent=Os01t0723450-00
Chr01	irgsp1_rep	exon	30168028	30168101	.	-	.	Parent=Os01t0723450-00
Chr01	irgsp1_rep	exon	30167843	30167944	.	-	.	Parent=Os01t0723450-00
Chr01	irgsp1_rep	exon	30167566	30167768	.	-	.	Parent=Os01t0723450-00
Chr01	irgsp1_rep	exon	30167249	30167383	.	-	.	Parent=Os01t0723450-00
Chr01	irgsp1_rep	exon	30166607	30166686	.	-	.	Parent=Os01t0723450-00
Chr01	irgsp1_rep	mRNA	30173442	30179045	.	+	.	ID=Os01t0723500-00;Name=Os01t0723500-00;Locus_id=Os01g0723500;Note=Transcriptional factor B3 family protein.;Transcript_evidence=Q8S2E6 (UniProt);ORF_evidence=Q8S2E6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);TENOR=Os01t0723500-00
Chr01	irgsp1_rep	CDS	30173442	30173540	.	+	0	Parent=Os01t0723500-00
Chr01	irgsp1_rep	CDS	30173837	30174305	.	+	0	Parent=Os01t0723500-00
Chr01	irgsp1_rep	CDS	30178279	30178622	.	+	2	Parent=Os01t0723500-00
Chr01	irgsp1_rep	CDS	30178749	30179045	.	+	0	Parent=Os01t0723500-00
Chr01	irgsp1_rep	mRNA	30180581	30184467	.	+	.	ID=Os01t0723600-01;Name=Os01t0723600-01;Locus_id=Os01g0723600;Note=Ribose-phosphate pyrophosphokinase 3 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 3).;Transcript_evidence=AK109735 (DDBJ%2C Best hit);ORF_evidence=Q9XGA0 (UniProt);GO=Biological Process: nucleoside metabolic process (GO:0009116),Biological Process: nucleotide biosynthetic process (GO:0009165),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: ribose phosphate diphosphokinase activity (GO:0004749);InterPro=Phosphoribosyltransferase (IPR000836),Ribose-phosphate diphosphokinase (IPR005946);NIAS_FLcDNA=002-146-C08;Expression=AK109735;TENOR=Os01t0723600-01;KEGG=Os01t0723600-01 (EC:2.7.6.1)
Chr01	irgsp1_rep	five_prime_UTR	30180581	30180706	.	+	.	Parent=Os01t0723600-01
Chr01	irgsp1_rep	CDS	30180707	30181092	.	+	0	Parent=Os01t0723600-01
Chr01	irgsp1_rep	CDS	30181867	30182182	.	+	1	Parent=Os01t0723600-01
Chr01	irgsp1_rep	CDS	30182266	30182361	.	+	0	Parent=Os01t0723600-01
Chr01	irgsp1_rep	CDS	30182453	30182521	.	+	0	Parent=Os01t0723600-01
Chr01	irgsp1_rep	CDS	30182621	30182749	.	+	0	Parent=Os01t0723600-01
Chr01	irgsp1_rep	CDS	30182908	30183007	.	+	0	Parent=Os01t0723600-01
Chr01	irgsp1_rep	CDS	30184064	30184197	.	+	2	Parent=Os01t0723600-01
Chr01	irgsp1_rep	three_prime_UTR	30184198	30184467	.	+	.	Parent=Os01t0723600-01
Chr01	irgsp1_rep	mRNA	30185134	30189525	.	+	.	ID=Os01t0723700-01;Name=Os01t0723700-01;Locus_id=Os01g0723700;Note=Transcriptional factor B3 family protein.;Transcript_evidence=AK243092 (DDBJ%2C Best hit);ORF_evidence=Q5JNA1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=J100023B20;TENOR=Os01t0723700-01;KEGG=Os01t0723700-01
Chr01	irgsp1_rep	five_prime_UTR	30185134	30185515	.	+	.	Parent=Os01t0723700-01
Chr01	irgsp1_rep	CDS	30185516	30185581	.	+	0	Parent=Os01t0723700-01
Chr01	irgsp1_rep	CDS	30186468	30186869	.	+	0	Parent=Os01t0723700-01
Chr01	irgsp1_rep	CDS	30187323	30187635	.	+	0	Parent=Os01t0723700-01
Chr01	irgsp1_rep	CDS	30187709	30188101	.	+	2	Parent=Os01t0723700-01
Chr01	irgsp1_rep	CDS	30188185	30189170	.	+	2	Parent=Os01t0723700-01
Chr01	irgsp1_rep	three_prime_UTR	30189171	30189242	.	+	.	Parent=Os01t0723700-01
Chr01	irgsp1_rep	three_prime_UTR	30189351	30189525	.	+	.	Parent=Os01t0723700-01
Chr01	irgsp1_rep	mRNA	30189386	30195340	.	-	.	ID=Os01t0723800-01;Name=Os01t0723800-01;Locus_id=Os01g0723800;CGSNL Gene Symbol=MDR17;CGSNL Gene Name=MULTIDRUG RESISTANCE 17;Oryzabase Gene Symbol Synonym(s)=OsABCB7%2C ABCB7%2C OsPGP7%2C OsMDR17;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCB subgroup member 7%2C P-Glycoprotein 7%2C multidrug resistance 17;Note=Similar to P-glycoprotein homologue.;Transcript_evidence=AK067006 (DDBJ%2C Best hit);ORF_evidence=O23998 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);NIAS_FLcDNA=J013093O09;Oryzabase=11926;Expression=AK067006;TENOR=Os01t0723800-01;KEGG=Os01t0723800-01
Chr01	irgsp1_rep	five_prime_UTR	30195212	30195340	.	-	.	Parent=Os01t0723800-01
Chr01	irgsp1_rep	CDS	30194960	30195211	.	-	0	Parent=Os01t0723800-01
Chr01	irgsp1_rep	CDS	30194741	30194795	.	-	0	Parent=Os01t0723800-01
Chr01	irgsp1_rep	CDS	30194466	30194644	.	-	2	Parent=Os01t0723800-01
Chr01	irgsp1_rep	CDS	30192824	30193281	.	-	0	Parent=Os01t0723800-01
Chr01	irgsp1_rep	CDS	30192191	30192731	.	-	1	Parent=Os01t0723800-01
Chr01	irgsp1_rep	CDS	30191929	30192108	.	-	0	Parent=Os01t0723800-01
Chr01	irgsp1_rep	CDS	30190547	30191827	.	-	0	Parent=Os01t0723800-01
Chr01	irgsp1_rep	CDS	30190011	30190417	.	-	0	Parent=Os01t0723800-01
Chr01	irgsp1_rep	CDS	30189561	30189912	.	-	1	Parent=Os01t0723800-01
Chr01	irgsp1_rep	three_prime_UTR	30189386	30189560	.	-	.	Parent=Os01t0723800-01
Chr01	irgsp1_rep	mRNA	30189384	30191725	.	-	.	ID=Os01t0723800-02;Name=Os01t0723800-02;Locus_id=Os01g0723800;CGSNL Gene Symbol=MDR17;CGSNL Gene Name=MULTIDRUG RESISTANCE 17;Oryzabase Gene Symbol Synonym(s)=OsABCB7%2C ABCB7%2C OsPGP7%2C OsMDR17;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCB subgroup member 7%2C P-Glycoprotein 7%2C multidrug resistance 17;Note=Hypothetical conserved gene.;Transcript_evidence=AK061902 (DDBJ%2C Best hit);ORF_evidence=B8A926 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);NIAS_FLcDNA=001-041-H06;Oryzabase=11926;Expression=AK061902;TENOR=Os01t0723800-02;KEGG=Os01t0723800-02
Chr01	irgsp1_rep	CDS	30190547	30191725	.	-	0	Parent=Os01t0723800-02
Chr01	irgsp1_rep	CDS	30190011	30190417	.	-	0	Parent=Os01t0723800-02
Chr01	irgsp1_rep	CDS	30189561	30189912	.	-	1	Parent=Os01t0723800-02
Chr01	irgsp1_rep	three_prime_UTR	30189384	30189560	.	-	.	Parent=Os01t0723800-02
Chr01	irgsp1_rep	mRNA	30210432	30210505	.	+	.	ID=Os01t0724101-00;Name=Os01t0724101-00;Locus_id=Os01g0724101;Note=Non-protein coding transcript.;Transcript_evidence=X02683 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0724101-00
Chr01	irgsp1_rep	exon	30210432	30210505	.	+	.	Parent=Os01t0724101-00
Chr01	irgsp1_rep	mRNA	30214131	30214879	.	+	.	ID=Os01t0724400-00;Name=Os01t0724400-00;Locus_id=Os01g0724400;Note=Similar to Pleiotropic drug resistance protein 15.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7FMW4 (UniProt);TENOR=Os01t0724400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	30214131	30214324	.	+	0	Parent=Os01t0724400-00
Chr01	irgsp1_rep	CDS	30214435	30214644	.	+	1	Parent=Os01t0724400-00
Chr01	irgsp1_rep	CDS	30214759	30214879	.	+	1	Parent=Os01t0724400-00
Chr01	irgsp1_rep	mRNA	30214447	30218322	.	-	.	ID=Os01t0724450-01;Name=Os01t0724450-01;Locus_id=Os01g0724450;Note=Hypothetical gene.;Transcript_evidence=AK288334 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090022M10;TENOR=Os01t0724450-01;KEGG=Os01t0724450-01
Chr01	irgsp1_rep	five_prime_UTR	30215020	30218322	.	-	.	Parent=Os01t0724450-01
Chr01	irgsp1_rep	CDS	30214447	30215019	.	-	0	Parent=Os01t0724450-01
Chr01	irgsp1_rep	mRNA	30217567	30223067	.	+	.	ID=Os01t0724500-01;Name=Os01t0724500-01;Locus_id=Os01g0724500;CGSNL Gene Symbol=PDR15;CGSNL Gene Name=PLEIOTROPIC DRUG RESISTANCE 15;Oryzabase Gene Symbol Synonym(s)=OsABCG38%2C OsPDR15;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 38%2C pleiotropic drug resistance 15;Note=Similar to ABC transporter (PDR5-like) isolog (PDR1 ABC transporter).;Transcript_evidence=AK067653 (DDBJ%2C Best hit);ORF_evidence=A2ZXE5 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=ABC-2 type transporter (IPR013525),Plant PDR ABC transporter associated (IPR013581);NIAS_FLcDNA=J013112I11;Oryzabase=12012;Expression=AK067653;TENOR=Os01t0724500-01;KEGG=Os01t0724500-01
Chr01	irgsp1_rep	CDS	30217567	30217754	.	+	0	Parent=Os01t0724500-01
Chr01	irgsp1_rep	CDS	30217856	30218016	.	+	1	Parent=Os01t0724500-01
Chr01	irgsp1_rep	CDS	30218299	30218408	.	+	2	Parent=Os01t0724500-01
Chr01	irgsp1_rep	CDS	30218495	30218653	.	+	0	Parent=Os01t0724500-01
Chr01	irgsp1_rep	three_prime_UTR	30218654	30219321	.	+	.	Parent=Os01t0724500-01
Chr01	irgsp1_rep	three_prime_UTR	30219431	30219600	.	+	.	Parent=Os01t0724500-01
Chr01	irgsp1_rep	three_prime_UTR	30220237	30220560	.	+	.	Parent=Os01t0724500-01
Chr01	irgsp1_rep	three_prime_UTR	30220724	30221014	.	+	.	Parent=Os01t0724500-01
Chr01	irgsp1_rep	three_prime_UTR	30221099	30221182	.	+	.	Parent=Os01t0724500-01
Chr01	irgsp1_rep	three_prime_UTR	30221363	30221496	.	+	.	Parent=Os01t0724500-01
Chr01	irgsp1_rep	three_prime_UTR	30221689	30221916	.	+	.	Parent=Os01t0724500-01
Chr01	irgsp1_rep	three_prime_UTR	30222016	30222187	.	+	.	Parent=Os01t0724500-01
Chr01	irgsp1_rep	three_prime_UTR	30222364	30222618	.	+	.	Parent=Os01t0724500-01
Chr01	irgsp1_rep	three_prime_UTR	30222706	30223067	.	+	.	Parent=Os01t0724500-01
Chr01	irgsp1_rep	mRNA	30225839	30226507	.	+	.	ID=Os01t0724700-00;Name=Os01t0724700-00;Locus_id=Os01g0724700;Note=Similar to laChrymatory-factor synthase.;Transcript_evidence=AK354241 (DDBJ);ORF_evidence=NP_001152295.1 (RefSeq);InterPro=Polyketide cyclase/dehydrase (IPR019587),START-like domain (IPR023393);TENOR=Os01t0724700-00;KEGG=Os01t0724700-00
Chr01	irgsp1_rep	CDS	30225839	30226507	.	+	0	Parent=Os01t0724700-00
Chr01	irgsp1_rep	mRNA	30236130	30236776	.	+	.	ID=Os01t0725000-01;Name=Os01t0725000-01;Locus_id=Os01g0725000;Note=Similar to H0402C08.3 protein.;Transcript_evidence=AK062623 (DDBJ%2C Best hit);ORF_evidence=Q259J5 (UniProt);NIAS_FLcDNA=001-105-B11;Expression=AK062623;TENOR=Os01t0725000-01;KEGG=Os01t0725000-01
Chr01	irgsp1_rep	five_prime_UTR	30236130	30236183	.	+	.	Parent=Os01t0725000-01
Chr01	irgsp1_rep	five_prime_UTR	30236314	30236325	.	+	.	Parent=Os01t0725000-01
Chr01	irgsp1_rep	CDS	30236326	30236538	.	+	0	Parent=Os01t0725000-01
Chr01	irgsp1_rep	three_prime_UTR	30236539	30236776	.	+	.	Parent=Os01t0725000-01
Chr01	irgsp1_rep	mRNA	30241954	30251103	.	+	.	ID=Os01t0725400-01;Name=Os01t0725400-01;Locus_id=Os01g0725400;Note=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup domain containing protein.;Transcript_evidence=AK073926 (DDBJ%2C Best hit);ORF_evidence=A7P756 (UniProt);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup (IPR006459),Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);NIAS_FLcDNA=J033073E17;Expression=AK073926;TENOR=Os01t0725400-01;KEGG=Os01t0725400-01
Chr01	irgsp1_rep	five_prime_UTR	30241954	30242064	.	+	.	Parent=Os01t0725400-01
Chr01	irgsp1_rep	CDS	30242065	30242327	.	+	0	Parent=Os01t0725400-01
Chr01	irgsp1_rep	CDS	30242422	30242557	.	+	1	Parent=Os01t0725400-01
Chr01	irgsp1_rep	CDS	30250701	30250916	.	+	0	Parent=Os01t0725400-01
Chr01	irgsp1_rep	three_prime_UTR	30250917	30251103	.	+	.	Parent=Os01t0725400-01
Chr01	irgsp1_rep	mRNA	30251471	30254956	.	+	.	ID=Os01t0725600-01;Name=Os01t0725600-01;Locus_id=Os01g0725600;Note=Regulator of Chromosome condensation%2C RCC1 domain containing protein.;Transcript_evidence=AK101326 (DDBJ%2C Best hit);ORF_evidence=B8A8Z3 (UniProt);InterPro=Regulator of Chromosome condensation%2C RCC1 (IPR000408),Regulator of Chromosome condensation/beta-lactamase-inhibitor protein II (IPR009091);NIAS_FLcDNA=J033034G02;Expression=AK101326;TENOR=Os01t0725600-01;KEGG=Os01t0725600-01
Chr01	irgsp1_rep	five_prime_UTR	30251471	30251556	.	+	.	Parent=Os01t0725600-01
Chr01	irgsp1_rep	CDS	30251557	30251614	.	+	0	Parent=Os01t0725600-01
Chr01	irgsp1_rep	CDS	30251722	30251883	.	+	2	Parent=Os01t0725600-01
Chr01	irgsp1_rep	CDS	30253101	30253136	.	+	2	Parent=Os01t0725600-01
Chr01	irgsp1_rep	CDS	30253240	30253367	.	+	2	Parent=Os01t0725600-01
Chr01	irgsp1_rep	CDS	30253478	30254767	.	+	0	Parent=Os01t0725600-01
Chr01	irgsp1_rep	three_prime_UTR	30254768	30254956	.	+	.	Parent=Os01t0725600-01
Chr01	irgsp1_rep	mRNA	30257752	30263365	.	+	.	ID=Os01t0725800-01;Name=Os01t0725800-01;Locus_id=Os01g0725800;Oryzabase Gene Symbol Synonym(s)=OsWD40-24%2C OsSPA3/4;Oryzabase Gene Name Synonym(s)=SPA3/4-like;Note=WD40/YVTN repeat-like domain containing protein.;Transcript_evidence=AK101974 (DDBJ%2C Best hit);ORF_evidence=NP_175717.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),WD40 repeat (IPR001680),Protein kinase-like domain (IPR011009),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),Serine/threonine-protein kinase-like domain (IPR017442),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J033076N16;Oryzabase=10705;Expression=AK101974;TENOR=Os01t0725800-01;KEGG=Os01t0725800-01
Chr01	irgsp1_rep	five_prime_UTR	30257752	30258289	.	+	.	Parent=Os01t0725800-01
Chr01	irgsp1_rep	CDS	30258290	30258889	.	+	0	Parent=Os01t0725800-01
Chr01	irgsp1_rep	CDS	30258991	30259148	.	+	0	Parent=Os01t0725800-01
Chr01	irgsp1_rep	CDS	30259993	30260935	.	+	1	Parent=Os01t0725800-01
Chr01	irgsp1_rep	CDS	30261014	30261199	.	+	0	Parent=Os01t0725800-01
Chr01	irgsp1_rep	three_prime_UTR	30261200	30261600	.	+	.	Parent=Os01t0725800-01
Chr01	irgsp1_rep	three_prime_UTR	30262241	30262300	.	+	.	Parent=Os01t0725800-01
Chr01	irgsp1_rep	three_prime_UTR	30262826	30263365	.	+	.	Parent=Os01t0725800-01
Chr01	irgsp1_rep	mRNA	30263383	30264381	.	-	.	ID=Os01t0725900-01;Name=Os01t0725900-01;Locus_id=Os01g0725900;Note=Similar to arabinogalactan protein.;Transcript_evidence=AK108128 (DDBJ%2C Best hit);ORF_evidence=NP_001147175.1 (RefSeq);InterPro=Pollen Ole e 1 allergen/extensin (IPR006041);NIAS_FLcDNA=002-139-D07;TENOR=Os01t0725900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	30264333	30264381	.	-	.	Parent=Os01t0725900-01
Chr01	irgsp1_rep	CDS	30264119	30264332	.	-	0	Parent=Os01t0725900-01
Chr01	irgsp1_rep	CDS	30263710	30264014	.	-	2	Parent=Os01t0725900-01
Chr01	irgsp1_rep	three_prime_UTR	30263383	30263709	.	-	.	Parent=Os01t0725900-01
Chr01	irgsp1_rep	mRNA	30270960	30272787	.	+	.	ID=Os01t0726001-00;Name=Os01t0726001-00;Locus_id=Os01g0726001;Note=Hypothetical gene.;Transcript_evidence=CU406896 (DDBJ%2C Best hit);ORF_evidence=NP_001044117.1 (RefSeq);TENOR=Os01t0726001-00;KEGG=Os01t0726001-00
Chr01	irgsp1_rep	five_prime_UTR	30270960	30270960	.	+	.	Parent=Os01t0726001-00
Chr01	irgsp1_rep	CDS	30270961	30271353	.	+	0	Parent=Os01t0726001-00
Chr01	irgsp1_rep	three_prime_UTR	30271354	30271367	.	+	.	Parent=Os01t0726001-00
Chr01	irgsp1_rep	three_prime_UTR	30272517	30272787	.	+	.	Parent=Os01t0726001-00
Chr01	irgsp1_rep	mRNA	30272986	30274078	.	-	.	ID=Os01t0726100-01;Name=Os01t0726100-01;Locus_id=Os01g0726100;Note=Pollen Ole e 1 allergen and extensin domain containing protein.;Transcript_evidence=AK064172 (DDBJ%2C Best hit);ORF_evidence=NP_001152656.1 (RefSeq);InterPro=Pollen Ole e 1 allergen/extensin (IPR006041);NIAS_FLcDNA=002-104-A05;Expression=AK064172;TENOR=Os01t0726100-01;KEGG=Os01t0726100-01
Chr01	irgsp1_rep	five_prime_UTR	30274018	30274078	.	-	.	Parent=Os01t0726100-01
Chr01	irgsp1_rep	CDS	30273678	30274017	.	-	0	Parent=Os01t0726100-01
Chr01	irgsp1_rep	CDS	30273276	30273589	.	-	2	Parent=Os01t0726100-01
Chr01	irgsp1_rep	three_prime_UTR	30272986	30273275	.	-	.	Parent=Os01t0726100-01
Chr01	irgsp1_rep	mRNA	30278399	30280577	.	-	.	ID=Os01t0726400-01;Name=Os01t0726400-01;Locus_id=Os01g0726400;RAP-DB Gene Symbol Synonym(s)=MADS32%2C OsMADS32%2C CFO1%2C CFO1/OsMADS32%2C TRI1;RAP-DB Gene Name Synonym(s)=MADS BOX GENE 32%2C MADS box gene32%2C MADS-box transcription factor 32%2C CHIMERIC FLORAL ORGANS 1%2C triangular hull 1;CGSNL Gene Symbol=MADS32;CGSNL Gene Name=MADS BOX GENE 32;Oryzabase Gene Symbol Synonym(s)=OsMADS32%2C CFO1%2C CFO1/OsMADS32%2C TRI1%2C OsMADS32/CFO%2C CFO;Oryzabase Gene Name Synonym(s)=MADS box gene32%2C MADS-box transcription factor 32%2C CHIMERIC FLORAL ORGANS 1%2C triangular hull 1;Note=MADS box transcription factor%2C Regulation of floral organ identity;Transcript_evidence=HQ711850 (indica%2C 14bp deletion),AY177699 (Dongjin);ORF_evidence=Q8S151,A2WUN4;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein dimerization activity (GO:0046983),Cellular Component: nucleus (GO:0005634);InterPro=Transcription factor%2C MADS-box (IPR002100),Transcription factor%2C K-box (IPR002487);Manual Curation=July 20%2C 2014;Literature_PMID=22891238;Oryzabase=3097;TENOR=Os01t0726400-00
Chr01	irgsp1_rep	CDS	30280387	30280577	.	-	0	Parent=Os01t0726400-01
Chr01	irgsp1_rep	CDS	30280203	30280269	.	-	1	Parent=Os01t0726400-01
Chr01	irgsp1_rep	CDS	30280021	30280082	.	-	0	Parent=Os01t0726400-01
Chr01	irgsp1_rep	CDS	30279808	30279949	.	-	1	Parent=Os01t0726400-01
Chr01	irgsp1_rep	CDS	30279621	30279662	.	-	0	Parent=Os01t0726400-01
Chr01	irgsp1_rep	CDS	30278590	30278665	.	-	0	Parent=Os01t0726400-01
Chr01	irgsp1_rep	CDS	30278492	30278502	.	-	2	Parent=Os01t0726400-01
Chr01	irgsp1_rep	three_prime_UTR	30278399	30278491	.	-	.	Parent=Os01t0726400-01
Chr01	irgsp1_rep	mRNA	30293943	30296540	.	+	.	ID=Os01t0726700-01;Name=Os01t0726700-01;Locus_id=Os01g0726700;Note=Conserved hypothetical protein.;Transcript_evidence=AK100192 (DDBJ%2C Best hit);ORF_evidence=B9EZH8 (UniProt);NIAS_FLcDNA=J023036E12;Expression=AK100192;TENOR=Os01t0726700-01;KEGG=Os01t0726700-01
Chr01	irgsp1_rep	five_prime_UTR	30293943	30293986	.	+	.	Parent=Os01t0726700-01
Chr01	irgsp1_rep	CDS	30293987	30294155	.	+	0	Parent=Os01t0726700-01
Chr01	irgsp1_rep	CDS	30294265	30295753	.	+	2	Parent=Os01t0726700-01
Chr01	irgsp1_rep	CDS	30295876	30296206	.	+	1	Parent=Os01t0726700-01
Chr01	irgsp1_rep	three_prime_UTR	30296207	30296540	.	+	.	Parent=Os01t0726700-01
Chr01	irgsp1_rep	mRNA	30298621	30299053	.	+	.	ID=Os01t0726801-01;Name=Os01t0726801-01;Locus_id=Os01g0726801;Note=Non-protein coding transcript.;Transcript_evidence=AK241907 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J075049P20;TENOR=Os01t0726801-01
Chr01	irgsp1_rep	exon	30298621	30299053	.	+	.	Parent=Os01t0726801-01
Chr01	irgsp1_rep	mRNA	30311446	30315773	.	+	.	ID=Os01t0727100-01;Name=Os01t0727100-01;Locus_id=Os01g0727100;CGSNL Gene Symbol=GAUT22;CGSNL Gene Name=GALACTURONOSYLTRANSFERASE 22;Oryzabase Gene Symbol Synonym(s)=OsGAUT22;Oryzabase Gene Name Synonym(s)=galacturonosyltransferase 22;Note=Glycosyl transferase%2C family 8 protein.;Transcript_evidence=AK068181 (DDBJ%2C Best hit);ORF_evidence=NP_001147797.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 8 (IPR002495);NIAS_FLcDNA=J013134I17;Oryzabase=23264;Expression=AK068181;TENOR=Os01t0727100-01;KEGG=Os01t0727100-01
Chr01	irgsp1_rep	five_prime_UTR	30311446	30311695	.	+	.	Parent=Os01t0727100-01
Chr01	irgsp1_rep	CDS	30311696	30311912	.	+	0	Parent=Os01t0727100-01
Chr01	irgsp1_rep	CDS	30312019	30312083	.	+	2	Parent=Os01t0727100-01
Chr01	irgsp1_rep	CDS	30313341	30313511	.	+	0	Parent=Os01t0727100-01
Chr01	irgsp1_rep	CDS	30314151	30314720	.	+	0	Parent=Os01t0727100-01
Chr01	irgsp1_rep	CDS	30314827	30315133	.	+	0	Parent=Os01t0727100-01
Chr01	irgsp1_rep	CDS	30315236	30315516	.	+	2	Parent=Os01t0727100-01
Chr01	irgsp1_rep	three_prime_UTR	30315517	30315773	.	+	.	Parent=Os01t0727100-01
Chr01	irgsp1_rep	mRNA	30311583	30315736	.	+	.	ID=Os01t0727100-02;Name=Os01t0727100-02;Locus_id=Os01g0727100;CGSNL Gene Symbol=GAUT22;CGSNL Gene Name=GALACTURONOSYLTRANSFERASE 22;Oryzabase Gene Symbol Synonym(s)=OsGAUT22;Oryzabase Gene Name Synonym(s)=galacturonosyltransferase 22;Note=Glycosyl transferase%2C family 8 protein.;Transcript_evidence=AK105758 (DDBJ%2C Best hit);ORF_evidence=NP_001147797.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 8 (IPR002495);NIAS_FLcDNA=001-202-D04;Oryzabase=23264;Expression=AK105758;TENOR=Os01t0727100-02;KEGG=Os01t0727100-02
Chr01	irgsp1_rep	five_prime_UTR	30311583	30311695	.	+	.	Parent=Os01t0727100-02
Chr01	irgsp1_rep	CDS	30311696	30311912	.	+	0	Parent=Os01t0727100-02
Chr01	irgsp1_rep	CDS	30312019	30312083	.	+	2	Parent=Os01t0727100-02
Chr01	irgsp1_rep	CDS	30313341	30313511	.	+	0	Parent=Os01t0727100-02
Chr01	irgsp1_rep	CDS	30314151	30314720	.	+	0	Parent=Os01t0727100-02
Chr01	irgsp1_rep	CDS	30314827	30315133	.	+	0	Parent=Os01t0727100-02
Chr01	irgsp1_rep	CDS	30315236	30315516	.	+	2	Parent=Os01t0727100-02
Chr01	irgsp1_rep	three_prime_UTR	30315517	30315736	.	+	.	Parent=Os01t0727100-02
Chr01	irgsp1_rep	mRNA	30318816	30319626	.	+	.	ID=Os01t0727200-00;Name=Os01t0727200-00;Locus_id=Os01g0727200;Note=Hypothetical conserved gene.;Transcript_evidence=CT835020 (DDBJ%2C Best hit);ORF_evidence=Q01J33 (UniProt);TENOR=Os01t0727200-00;KEGG=Os01t0727200-00
Chr01	irgsp1_rep	five_prime_UTR	30318816	30319110	.	+	.	Parent=Os01t0727200-00
Chr01	irgsp1_rep	CDS	30319111	30319269	.	+	0	Parent=Os01t0727200-00
Chr01	irgsp1_rep	CDS	30319292	30319354	.	+	0	Parent=Os01t0727200-00
Chr01	irgsp1_rep	three_prime_UTR	30319355	30319626	.	+	.	Parent=Os01t0727200-00
Chr01	irgsp1_rep	mRNA	30320748	30323965	.	+	.	ID=Os01t0727400-01;Name=Os01t0727400-01;Locus_id=Os01g0727400;Note=NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 domain containing protein.;Transcript_evidence=AK065692 (DDBJ%2C Best hit);ORF_evidence=B6STL4 (UniProt);InterPro=Galactose-binding domain-like (IPR008979),NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (IPR013857);NIAS_FLcDNA=J013038H22;Expression=AK065692;TENOR=Os01t0727400-01;KEGG=Os01t0727400-01
Chr01	irgsp1_rep	five_prime_UTR	30320748	30320851	.	+	.	Parent=Os01t0727400-01
Chr01	irgsp1_rep	five_prime_UTR	30321013	30321043	.	+	.	Parent=Os01t0727400-01
Chr01	irgsp1_rep	CDS	30321044	30321095	.	+	0	Parent=Os01t0727400-01
Chr01	irgsp1_rep	CDS	30321505	30321618	.	+	2	Parent=Os01t0727400-01
Chr01	irgsp1_rep	CDS	30322618	30322680	.	+	2	Parent=Os01t0727400-01
Chr01	irgsp1_rep	CDS	30323031	30323122	.	+	2	Parent=Os01t0727400-01
Chr01	irgsp1_rep	CDS	30323206	30323286	.	+	0	Parent=Os01t0727400-01
Chr01	irgsp1_rep	CDS	30323371	30323469	.	+	0	Parent=Os01t0727400-01
Chr01	irgsp1_rep	CDS	30323537	30323725	.	+	0	Parent=Os01t0727400-01
Chr01	irgsp1_rep	three_prime_UTR	30323726	30323965	.	+	.	Parent=Os01t0727400-01
Chr01	irgsp1_rep	mRNA	30322749	30325083	.	-	.	ID=Os01t0727500-02;Name=Os01t0727500-02;Locus_id=Os01g0727500;RAP-DB Gene Symbol Synonym(s)=OsS40-7;RAP-DB Gene Name Synonym(s)=S40 protein 7;CGSNL Gene Symbol=S40-7;CGSNL Gene Name=S40 PROTEIN 7;Oryzabase Gene Symbol Synonym(s)=OsS40-7;Oryzabase Gene Name Synonym(s)=S40 protein 7;Note=A member of S40 gene family%2C Leaf senescence;Transcript_evidence=AK107020,AK107206;ORF_evidence=Q5JM47;InterPro=Senescence regulator S40 (IPR007608);NIAS_FLcDNA=002-120-H09,002-125-B09;Manual Curation=November 8%2C 2019;Literature_PMID=31046677;Oryzabase=22077;Expression=AK107020;TENOR=Os01t0727500-02;KEGG=Os01t0727500-02;Subcellular location=cytoplasm (GO:0005737) [several speckles]
Chr01	irgsp1_rep	five_prime_UTR	30324983	30325083	.	-	.	Parent=Os01t0727500-02
Chr01	irgsp1_rep	CDS	30324590	30324982	.	-	0	Parent=Os01t0727500-02
Chr01	irgsp1_rep	three_prime_UTR	30322749	30324589	.	-	.	Parent=Os01t0727500-02
Chr01	irgsp1_rep	mRNA	30340015	30340752	.	-	.	ID=Os01t0727600-01;Name=Os01t0727600-01;Locus_id=Os01g0727600;CGSNL Gene Symbol=S40-10;CGSNL Gene Name=S40 PROTEIN 10;Oryzabase Gene Symbol Synonym(s)=OsS40-10;Oryzabase Gene Name Synonym(s)=S40 protein 10;Note=Conserved hypothetical protein.;Transcript_evidence=AK243270 (DDBJ%2C Best hit);ORF_evidence=A2ZXG0 (UniProt);NIAS_FLcDNA=J100049J08;Oryzabase=22080;TENOR=Os01t0727600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	30340752	30340752	.	-	.	Parent=Os01t0727600-01
Chr01	irgsp1_rep	CDS	30340311	30340751	.	-	0	Parent=Os01t0727600-01
Chr01	irgsp1_rep	three_prime_UTR	30340015	30340310	.	-	.	Parent=Os01t0727600-01
Chr01	irgsp1_rep	mRNA	30341265	30341594	.	-	.	ID=Os01t0727700-00;Name=Os01t0727700-00;Locus_id=Os01g0727700;CGSNL Gene Symbol=S40-10;CGSNL Gene Name=S40 PROTEIN 10;Oryzabase Gene Symbol Synonym(s)=OsS40-10;Oryzabase Gene Name Synonym(s)=S40 protein 10;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5JM44 (UniProt);InterPro=Protein of unknown function DUF584 (IPR007608);Oryzabase=22080;TENOR=Os01t0727700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	30341265	30341594	.	-	0	Parent=Os01t0727700-00
Chr01	irgsp1_rep	mRNA	30344172	30345745	.	-	.	ID=Os01t0727800-01;Name=Os01t0727800-01;Locus_id=Os01g0727800;Oryzabase Gene Symbol Synonym(s)=OsSub3%2C SUB3;Oryzabase Gene Name Synonym(s)=Subtilisin 3%2C SUBTILISIN 3;Note=Peptidase S8%2C subtilisin-related domain containing protein.;Transcript_evidence=AK108195 (DDBJ%2C Best hit);ORF_evidence=XP_002863463.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);NIAS_FLcDNA=002-140-C06;Oryzabase=20095;Expression=AK108195;TENOR=Os01t0727800-01;KEGG=Os01t0727800-01
Chr01	irgsp1_rep	CDS	30345690	30345745	.	-	0	Parent=Os01t0727800-01
Chr01	irgsp1_rep	CDS	30345247	30345604	.	-	1	Parent=Os01t0727800-01
Chr01	irgsp1_rep	CDS	30344951	30345164	.	-	0	Parent=Os01t0727800-01
Chr01	irgsp1_rep	CDS	30344314	30344849	.	-	2	Parent=Os01t0727800-01
Chr01	irgsp1_rep	three_prime_UTR	30344172	30344313	.	-	.	Parent=Os01t0727800-01
Chr01	irgsp1_rep	mRNA	30344327	30346491	.	+	.	ID=Os01t0727820-00;Name=Os01t0727820-00;Locus_id=Os01g0727820;Note=Hypothetical protein.;Transcript_evidence=tplb0030b01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0727820-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	30344327	30344349	.	+	.	Parent=Os01t0727820-00
Chr01	irgsp1_rep	CDS	30344350	30344845	.	+	0	Parent=Os01t0727820-00
Chr01	irgsp1_rep	CDS	30344938	30344939	.	+	2	Parent=Os01t0727820-00
Chr01	irgsp1_rep	three_prime_UTR	30344940	30345158	.	+	.	Parent=Os01t0727820-00
Chr01	irgsp1_rep	three_prime_UTR	30345241	30345617	.	+	.	Parent=Os01t0727820-00
Chr01	irgsp1_rep	three_prime_UTR	30345709	30345762	.	+	.	Parent=Os01t0727820-00
Chr01	irgsp1_rep	three_prime_UTR	30345901	30346491	.	+	.	Parent=Os01t0727820-00
Chr01	irgsp1_rep	mRNA	30347875	30349017	.	-	.	ID=Os01t0727840-00;Name=Os01t0727840-00;Locus_id=Os01g0727840;Oryzabase Gene Symbol Synonym(s)=OsSub3%2C SUB3;Oryzabase Gene Name Synonym(s)=Subtilisin 3%2C SUBTILISIN 3;Note=Similar to subtilase family protein.;Transcript_evidence=CT834990 (DDBJ%2C Best hit);ORF_evidence=NP_199378.1 (RefSeq);GO=Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500);Oryzabase=20095;TENOR=Os01t0727840-00;KEGG=Os01t0727840-00
Chr01	irgsp1_rep	five_prime_UTR	30348913	30349017	.	-	.	Parent=Os01t0727840-00
Chr01	irgsp1_rep	CDS	30348820	30348912	.	-	0	Parent=Os01t0727840-00
Chr01	irgsp1_rep	CDS	30348601	30348695	.	-	0	Parent=Os01t0727840-00
Chr01	irgsp1_rep	CDS	30348331	30348428	.	-	1	Parent=Os01t0727840-00
Chr01	irgsp1_rep	CDS	30347930	30348114	.	-	2	Parent=Os01t0727840-00
Chr01	irgsp1_rep	three_prime_UTR	30347875	30347929	.	-	.	Parent=Os01t0727840-00
Chr01	irgsp1_rep	mRNA	30348327	30348969	.	+	.	ID=Os01t0727860-00;Name=Os01t0727860-00;Locus_id=Os01g0727860;Note=Non-protein coding transcript.;Transcript_evidence=EU941179 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0727860-00
Chr01	irgsp1_rep	exon	30348327	30348969	.	+	.	Parent=Os01t0727860-00
Chr01	irgsp1_rep	mRNA	30352663	30353959	.	+	.	ID=Os01t0727900-01;Name=Os01t0727900-01;Locus_id=Os01g0727900;Note=Conserved hypothetical protein.;Transcript_evidence=AK102017 (DDBJ%2C Best hit);ORF_evidence=B8A900 (UniProt);NIAS_FLcDNA=J033080F19;Expression=AK102017;TENOR=Os01t0727900-01;KEGG=Os01t0727900-01
Chr01	irgsp1_rep	five_prime_UTR	30352663	30352676	.	+	.	Parent=Os01t0727900-01
Chr01	irgsp1_rep	CDS	30352677	30353171	.	+	0	Parent=Os01t0727900-01
Chr01	irgsp1_rep	CDS	30353265	30353432	.	+	0	Parent=Os01t0727900-01
Chr01	irgsp1_rep	three_prime_UTR	30353433	30353959	.	+	.	Parent=Os01t0727900-01
Chr01	irgsp1_rep	mRNA	30356332	30359372	.	+	.	ID=Os01t0728000-01;Name=Os01t0728000-01;Locus_id=Os01g0728000;Note=Conserved hypothetical protein.;Transcript_evidence=AK106601 (DDBJ%2C Best hit);ORF_evidence=Q5N7S3 (UniProt);NIAS_FLcDNA=002-112-B11;TENOR=Os01t0728000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	30356332	30357187	.	+	.	Parent=Os01t0728000-01
Chr01	irgsp1_rep	CDS	30357188	30357391	.	+	0	Parent=Os01t0728000-01
Chr01	irgsp1_rep	three_prime_UTR	30357392	30357667	.	+	.	Parent=Os01t0728000-01
Chr01	irgsp1_rep	three_prime_UTR	30358921	30359372	.	+	.	Parent=Os01t0728000-01
Chr01	irgsp1_rep	mRNA	30361864	30364101	.	+	.	ID=Os01t0728100-01;Name=Os01t0728100-01;Locus_id=Os01g0728100;CGSNL Gene Symbol=GELP24;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 24;Oryzabase Gene Symbol Synonym(s)=OsGELP24;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 24;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK070946 (DDBJ%2C Best hit);ORF_evidence=NP_001149980.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=J023074K21;Oryzabase=10974;Expression=AK070946;TENOR=Os01t0728100-01;KEGG=Os01t0728100-01
Chr01	irgsp1_rep	five_prime_UTR	30361864	30361958	.	+	.	Parent=Os01t0728100-01
Chr01	irgsp1_rep	CDS	30361959	30362291	.	+	0	Parent=Os01t0728100-01
Chr01	irgsp1_rep	three_prime_UTR	30362292	30362872	.	+	.	Parent=Os01t0728100-01
Chr01	irgsp1_rep	three_prime_UTR	30362963	30364101	.	+	.	Parent=Os01t0728100-01
Chr01	irgsp1_rep	mRNA	30363380	30364093	.	+	.	ID=Os01t0728100-02;Name=Os01t0728100-02;Locus_id=Os01g0728100;CGSNL Gene Symbol=GELP24;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 24;Oryzabase Gene Symbol Synonym(s)=OsGELP24;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 24;Note=Similar to anther-specific proline-rich protein APG.;Transcript_evidence=AK104682 (DDBJ%2C Best hit);ORF_evidence=NP_001149980.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=001-036-A06;Oryzabase=10974;Expression=AK104682;TENOR=Os01t0728100-02;KEGG=Os01t0728100-02
Chr01	irgsp1_rep	CDS	30363380	30363685	.	+	0	Parent=Os01t0728100-02
Chr01	irgsp1_rep	three_prime_UTR	30363686	30364093	.	+	.	Parent=Os01t0728100-02
Chr01	irgsp1_rep	mRNA	30364320	30365422	.	-	.	ID=Os01t0728150-00;Name=Os01t0728150-00;Locus_id=Os01g0728150;Note=Similar to HVA22F (HVA22-LIKE PROTEIN F).;Transcript_evidence=EU955403 (DDBJ);ORF_evidence=NP_181810.2 (RefSeq);InterPro=TB2/DP1/HVA22-related protein (IPR004345);TENOR=Os01t0728150-00;KEGG=Os01t0728150-00
Chr01	irgsp1_rep	CDS	30365217	30365422	.	-	0	Parent=Os01t0728150-00
Chr01	irgsp1_rep	CDS	30365017	30365043	.	-	1	Parent=Os01t0728150-00
Chr01	irgsp1_rep	CDS	30364781	30364903	.	-	1	Parent=Os01t0728150-00
Chr01	irgsp1_rep	CDS	30364320	30364686	.	-	1	Parent=Os01t0728150-00
Chr01	irgsp1_rep	mRNA	30366118	30367630	.	-	.	ID=Os01t0728200-01;Name=Os01t0728200-01;Locus_id=Os01g0728200;Note=Conserved hypothetical protein.;Transcript_evidence=AK060469 (DDBJ%2C Best hit);ORF_evidence=A2WUP7 (UniProt);NIAS_FLcDNA=001-012-D12;TENOR=Os01t0728200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	30367630	30367630	.	-	.	Parent=Os01t0728200-01
Chr01	irgsp1_rep	CDS	30366376	30367629	.	-	0	Parent=Os01t0728200-01
Chr01	irgsp1_rep	three_prime_UTR	30366118	30366375	.	-	.	Parent=Os01t0728200-01
Chr01	irgsp1_rep	mRNA	30369522	30370159	.	-	.	ID=Os01t0728250-01;Name=Os01t0728250-01;Locus_id=Os01g0728250;Note=Conserved hypothetical protein.;Transcript_evidence=AK241457 (DDBJ%2C Best hit);ORF_evidence=NP_001172551.1 (RefSeq);NIAS_FLcDNA=J065164C03;TENOR=Os01t0728250-01;KEGG=Os01t0728250-01
Chr01	irgsp1_rep	five_prime_UTR	30370066	30370159	.	-	.	Parent=Os01t0728250-01
Chr01	irgsp1_rep	CDS	30369658	30370065	.	-	0	Parent=Os01t0728250-01
Chr01	irgsp1_rep	three_prime_UTR	30369522	30369657	.	-	.	Parent=Os01t0728250-01
Chr01	irgsp1_rep	mRNA	30372204	30376912	.	-	.	ID=Os01t0728300-01;Name=Os01t0728300-01;Locus_id=Os01g0728300;Note=Similar to CytoChrome P450 monooxygenase CYP72A5 (Fragment).;Transcript_evidence=AK073238 (DDBJ%2C Best hit);ORF_evidence=Q8LL74 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);NIAS_FLcDNA=J033015M03;Expression=AK073238;TENOR=Os01t0728300-01;KEGG=Os01t0728300-01
Chr01	irgsp1_rep	five_prime_UTR	30376817	30376912	.	-	.	Parent=Os01t0728300-01
Chr01	irgsp1_rep	CDS	30376528	30376816	.	-	0	Parent=Os01t0728300-01
Chr01	irgsp1_rep	CDS	30375561	30375781	.	-	2	Parent=Os01t0728300-01
Chr01	irgsp1_rep	CDS	30374957	30375201	.	-	0	Parent=Os01t0728300-01
Chr01	irgsp1_rep	CDS	30374004	30374382	.	-	1	Parent=Os01t0728300-01
Chr01	irgsp1_rep	CDS	30372645	30373070	.	-	0	Parent=Os01t0728300-01
Chr01	irgsp1_rep	three_prime_UTR	30372204	30372644	.	-	.	Parent=Os01t0728300-01
Chr01	irgsp1_rep	mRNA	30372587	30376825	.	+	.	ID=Os01t0728325-00;Name=Os01t0728325-00;Locus_id=Os01g0728325;Note=Hypothetical protein.;Transcript_evidence=tplb0028e19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0728325-00
Chr01	irgsp1_rep	five_prime_UTR	30372587	30373052	.	+	.	Parent=Os01t0728325-00
Chr01	irgsp1_rep	five_prime_UTR	30373984	30374374	.	+	.	Parent=Os01t0728325-00
Chr01	irgsp1_rep	five_prime_UTR	30374950	30375203	.	+	.	Parent=Os01t0728325-00
Chr01	irgsp1_rep	five_prime_UTR	30375557	30375775	.	+	.	Parent=Os01t0728325-00
Chr01	irgsp1_rep	five_prime_UTR	30376517	30376559	.	+	.	Parent=Os01t0728325-00
Chr01	irgsp1_rep	CDS	30376560	30376825	.	+	0	Parent=Os01t0728325-00
Chr01	irgsp1_rep	mRNA	30377964	30383831	.	-	.	ID=Os01t0728350-00;Name=Os01t0728350-00;Locus_id=Os01g0728350;Note=Similar to CytoChrome P450 monooxygenase CYP72A5.;Transcript_evidence=BT084281 (DDBJ);ORF_evidence=Q8LGM8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);TENOR=Os01t0728350-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	30383657	30383831	.	-	.	Parent=Os01t0728350-00
Chr01	irgsp1_rep	five_prime_UTR	30379530	30379607	.	-	.	Parent=Os01t0728350-00
Chr01	irgsp1_rep	CDS	30379416	30379529	.	-	0	Parent=Os01t0728350-00
Chr01	irgsp1_rep	CDS	30378185	30378523	.	-	0	Parent=Os01t0728350-00
Chr01	irgsp1_rep	three_prime_UTR	30377964	30378184	.	-	.	Parent=Os01t0728350-00
Chr01	irgsp1_rep	mRNA	30378105	30383834	.	+	.	ID=Os01t0728375-00;Name=Os01t0728375-00;Locus_id=Os01g0728375;Note=Hypothetical protein.;Transcript_evidence=tplb0037h21 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0728375-00
Chr01	irgsp1_rep	five_prime_UTR	30378105	30378170	.	+	.	Parent=Os01t0728375-00
Chr01	irgsp1_rep	CDS	30378171	30378525	.	+	0	Parent=Os01t0728375-00
Chr01	irgsp1_rep	CDS	30379425	30379462	.	+	2	Parent=Os01t0728375-00
Chr01	irgsp1_rep	three_prime_UTR	30379463	30379593	.	+	.	Parent=Os01t0728375-00
Chr01	irgsp1_rep	three_prime_UTR	30383635	30383834	.	+	.	Parent=Os01t0728375-00
Chr01	irgsp1_rep	mRNA	30381185	30383228	.	+	.	ID=Os01t0728400-01;Name=Os01t0728400-01;Locus_id=Os01g0728400;Note=Conserved hypothetical protein.;Transcript_evidence=AK065089 (DDBJ%2C Best hit);ORF_evidence=B8A903 (UniProt);NIAS_FLcDNA=J013001L21;TENOR=Os01t0728400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	30381185	30381369	.	+	.	Parent=Os01t0728400-01
Chr01	irgsp1_rep	five_prime_UTR	30381512	30381656	.	+	.	Parent=Os01t0728400-01
Chr01	irgsp1_rep	five_prime_UTR	30381731	30381806	.	+	.	Parent=Os01t0728400-01
Chr01	irgsp1_rep	five_prime_UTR	30382533	30382644	.	+	.	Parent=Os01t0728400-01
Chr01	irgsp1_rep	five_prime_UTR	30382734	30382762	.	+	.	Parent=Os01t0728400-01
Chr01	irgsp1_rep	five_prime_UTR	30382863	30382938	.	+	.	Parent=Os01t0728400-01
Chr01	irgsp1_rep	CDS	30382939	30383157	.	+	0	Parent=Os01t0728400-01
Chr01	irgsp1_rep	three_prime_UTR	30383158	30383228	.	+	.	Parent=Os01t0728400-01
Chr01	irgsp1_rep	mRNA	30386907	30387873	.	-	.	ID=Os01t0728700-01;Name=Os01t0728700-01;Locus_id=Os01g0728700;Note=Protein of unknown function DUF1264 family protein.;Transcript_evidence=AK108000 (DDBJ%2C Best hit);ORF_evidence=NP_001152700.1 (RefSeq);InterPro=Protein of unknown function DUF1264 (IPR010686);NIAS_FLcDNA=002-135-G05;Expression=AK108000;TENOR=Os01t0728700-01;KEGG=Os01t0728700-01
Chr01	irgsp1_rep	five_prime_UTR	30387850	30387873	.	-	.	Parent=Os01t0728700-01
Chr01	irgsp1_rep	CDS	30387558	30387849	.	-	0	Parent=Os01t0728700-01
Chr01	irgsp1_rep	CDS	30387002	30387462	.	-	2	Parent=Os01t0728700-01
Chr01	irgsp1_rep	three_prime_UTR	30386907	30387001	.	-	.	Parent=Os01t0728700-01
Chr01	irgsp1_rep	mRNA	30392737	30398178	.	+	.	ID=Os01t0728900-01;Name=Os01t0728900-01;Locus_id=Os01g0728900;Note=Hypothetical protein.;Transcript_evidence=AK071876 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013040F16;TENOR=Os01t0728900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	30392737	30392738	.	+	.	Parent=Os01t0728900-01
Chr01	irgsp1_rep	CDS	30392739	30393134	.	+	0	Parent=Os01t0728900-01
Chr01	irgsp1_rep	three_prime_UTR	30393135	30393245	.	+	.	Parent=Os01t0728900-01
Chr01	irgsp1_rep	three_prime_UTR	30394736	30394785	.	+	.	Parent=Os01t0728900-01
Chr01	irgsp1_rep	three_prime_UTR	30394976	30397409	.	+	.	Parent=Os01t0728900-01
Chr01	irgsp1_rep	three_prime_UTR	30397849	30398178	.	+	.	Parent=Os01t0728900-01
Chr01	irgsp1_rep	mRNA	30392739	30395472	.	+	.	ID=Os01t0728900-02;Name=Os01t0728900-02;Locus_id=Os01g0728900;Note=Hypothetical protein.;Transcript_evidence=AK060353 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-008-G05;TENOR=Os01t0728900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	30392739	30393134	.	+	0	Parent=Os01t0728900-02
Chr01	irgsp1_rep	three_prime_UTR	30393135	30393245	.	+	.	Parent=Os01t0728900-02
Chr01	irgsp1_rep	three_prime_UTR	30394736	30394785	.	+	.	Parent=Os01t0728900-02
Chr01	irgsp1_rep	three_prime_UTR	30394976	30395088	.	+	.	Parent=Os01t0728900-02
Chr01	irgsp1_rep	three_prime_UTR	30395183	30395472	.	+	.	Parent=Os01t0728900-02
Chr01	irgsp1_rep	mRNA	30392762	30395478	.	+	.	ID=Os01t0728900-03;Name=Os01t0728900-03;Locus_id=Os01g0728900;Note=Hypothetical gene.;Transcript_evidence=AK102746 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033106J19;Expression=AK102746;TENOR=Os01t0728900-03;KEGG=Os01t0728900-03
Chr01	irgsp1_rep	five_prime_UTR	30392762	30392762	.	+	.	Parent=Os01t0728900-03
Chr01	irgsp1_rep	CDS	30392763	30393134	.	+	0	Parent=Os01t0728900-03
Chr01	irgsp1_rep	three_prime_UTR	30393135	30394785	.	+	.	Parent=Os01t0728900-03
Chr01	irgsp1_rep	three_prime_UTR	30394976	30395088	.	+	.	Parent=Os01t0728900-03
Chr01	irgsp1_rep	three_prime_UTR	30395183	30395478	.	+	.	Parent=Os01t0728900-03
Chr01	irgsp1_rep	mRNA	30398989	30405483	.	+	.	ID=Os01t0729100-01;Name=Os01t0729100-01;Locus_id=Os01g0729100;Note=Protein of unknown function DUF92%2C transmembrane family protein.;Transcript_evidence=AK068733 (DDBJ%2C Best hit),AK098962 (DDBJ%2C Best hit),AK104436 (DDBJ%2C Best hit);ORF_evidence=NP_565184.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Protein of unknown function DUF92%2C TMEM19 (IPR002794);NIAS_FLcDNA=J013159G20,J013074C02,006-208-F03;TENOR=Os01t0729100-01
Chr01	irgsp1_rep	five_prime_UTR	30398989	30399038	.	+	.	Parent=Os01t0729100-01
Chr01	irgsp1_rep	CDS	30399039	30399419	.	+	0	Parent=Os01t0729100-01
Chr01	irgsp1_rep	CDS	30400528	30400781	.	+	0	Parent=Os01t0729100-01
Chr01	irgsp1_rep	CDS	30400917	30401040	.	+	1	Parent=Os01t0729100-01
Chr01	irgsp1_rep	CDS	30401226	30401330	.	+	0	Parent=Os01t0729100-01
Chr01	irgsp1_rep	CDS	30405175	30405267	.	+	0	Parent=Os01t0729100-01
Chr01	irgsp1_rep	three_prime_UTR	30405268	30405483	.	+	.	Parent=Os01t0729100-01
Chr01	irgsp1_rep	mRNA	30399069	30405429	.	+	.	ID=Os01t0729100-02;Name=Os01t0729100-02;Locus_id=Os01g0729100;Note=Similar to uncharacterized conserved membrane protein.;Transcript_evidence=AK104272 (DDBJ%2C Best hit);ORF_evidence=NP_565184.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Protein of unknown function DUF92%2C TMEM19 (IPR002794);NIAS_FLcDNA=006-312-A09;Expression=AK104272;TENOR=Os01t0729100-02;KEGG=Os01t0729100-02
Chr01	irgsp1_rep	CDS	30399069	30399419	.	+	0	Parent=Os01t0729100-02
Chr01	irgsp1_rep	CDS	30400528	30400781	.	+	0	Parent=Os01t0729100-02
Chr01	irgsp1_rep	CDS	30400917	30401040	.	+	1	Parent=Os01t0729100-02
Chr01	irgsp1_rep	CDS	30401226	30401330	.	+	0	Parent=Os01t0729100-02
Chr01	irgsp1_rep	CDS	30405175	30405267	.	+	0	Parent=Os01t0729100-02
Chr01	irgsp1_rep	three_prime_UTR	30405268	30405429	.	+	.	Parent=Os01t0729100-02
Chr01	irgsp1_rep	mRNA	30402153	30403740	.	-	.	ID=Os01t0729200-01;Name=Os01t0729200-01;Locus_id=Os01g0729200;Note=Conserved hypothetical protein.;Transcript_evidence=AK107055 (DDBJ%2C Best hit);ORF_evidence=NP_001062328.1 (RefSeq);NIAS_FLcDNA=002-121-D06;Expression=AK107055;TENOR=Os01t0729200-01;KEGG=Os01t0729200-01
Chr01	irgsp1_rep	five_prime_UTR	30403657	30403740	.	-	.	Parent=Os01t0729200-01
Chr01	irgsp1_rep	CDS	30403372	30403656	.	-	0	Parent=Os01t0729200-01
Chr01	irgsp1_rep	three_prime_UTR	30402153	30403371	.	-	.	Parent=Os01t0729200-01
Chr01	irgsp1_rep	mRNA	30407036	30408554	.	+	.	ID=Os01t0729400-01;Name=Os01t0729400-01;Locus_id=Os01g0729400;Note=Similar to Too many mouths protein.;Transcript_evidence=AK289020 (DDBJ%2C Best hit);ORF_evidence=B6U7B7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=J090090F09;TENOR=Os01t0729400-01;KEGG=Os01t0729400-01
Chr01	irgsp1_rep	five_prime_UTR	30407036	30407058	.	+	.	Parent=Os01t0729400-01
Chr01	irgsp1_rep	CDS	30407059	30408423	.	+	0	Parent=Os01t0729400-01
Chr01	irgsp1_rep	three_prime_UTR	30408424	30408554	.	+	.	Parent=Os01t0729400-01
Chr01	irgsp1_rep	mRNA	30412907	30413574	.	-	.	ID=Os01t0729500-01;Name=Os01t0729500-01;Locus_id=Os01g0729500;Note=Conserved hypothetical protein.;Transcript_evidence=AK064140 (DDBJ%2C Best hit);ORF_evidence=Q9AX16 (UniProt);NIAS_FLcDNA=002-103-A10;Expression=AK064140;TENOR=Os01t0729500-01;KEGG=Os01t0729500-01
Chr01	irgsp1_rep	CDS	30413110	30413574	.	-	0	Parent=Os01t0729500-01
Chr01	irgsp1_rep	three_prime_UTR	30412907	30413109	.	-	.	Parent=Os01t0729500-01
Chr01	irgsp1_rep	mRNA	30413693	30415806	.	-	.	ID=Os01t0729600-01;Name=Os01t0729600-01;Locus_id=Os01g0729600;Note=Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 domain containing protein.;Transcript_evidence=AK073549 (DDBJ%2C Best hit);ORF_evidence=E0CWB9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferase%2C class V/Cysteine desulfurase (IPR000192),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J033046C16;Expression=AK073549;TENOR=Os01t0729600-01;KEGG=Os01t0729600-01
Chr01	irgsp1_rep	five_prime_UTR	30415698	30415806	.	-	.	Parent=Os01t0729600-01
Chr01	irgsp1_rep	CDS	30415367	30415697	.	-	0	Parent=Os01t0729600-01
Chr01	irgsp1_rep	CDS	30413754	30415273	.	-	2	Parent=Os01t0729600-01
Chr01	irgsp1_rep	three_prime_UTR	30413693	30413753	.	-	.	Parent=Os01t0729600-01
Chr01	irgsp1_rep	mRNA	30413844	30415316	.	+	.	ID=Os01t0729700-01;Name=Os01t0729700-01;Locus_id=Os01g0729700;Note=Hypothetical protein.;Transcript_evidence=AK110918 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-173-C10;Expression=AK110918;TENOR=Os01t0729700-01;KEGG=Os01t0729700-01
Chr01	irgsp1_rep	five_prime_UTR	30413844	30414843	.	+	.	Parent=Os01t0729700-01
Chr01	irgsp1_rep	CDS	30414844	30415251	.	+	0	Parent=Os01t0729700-01
Chr01	irgsp1_rep	three_prime_UTR	30415252	30415316	.	+	.	Parent=Os01t0729700-01
Chr01	irgsp1_rep	mRNA	30427122	30431700	.	+	.	ID=Os01t0729900-01;Name=Os01t0729900-01;Locus_id=Os01g0729900;Note=Conserved hypothetical protein.;Transcript_evidence=AK065503 (DDBJ%2C Best hit);ORF_evidence=B8A906 (UniProt);NIAS_FLcDNA=J013026G23;Expression=AK065503;TENOR=Os01t0729900-01;KEGG=Os01t0729900-01
Chr01	irgsp1_rep	five_prime_UTR	30427122	30427486	.	+	.	Parent=Os01t0729900-01
Chr01	irgsp1_rep	CDS	30427487	30428092	.	+	0	Parent=Os01t0729900-01
Chr01	irgsp1_rep	CDS	30428675	30428914	.	+	0	Parent=Os01t0729900-01
Chr01	irgsp1_rep	CDS	30429053	30429142	.	+	0	Parent=Os01t0729900-01
Chr01	irgsp1_rep	CDS	30429512	30429661	.	+	0	Parent=Os01t0729900-01
Chr01	irgsp1_rep	CDS	30430171	30430295	.	+	0	Parent=Os01t0729900-01
Chr01	irgsp1_rep	CDS	30430699	30430828	.	+	1	Parent=Os01t0729900-01
Chr01	irgsp1_rep	CDS	30430905	30431030	.	+	0	Parent=Os01t0729900-01
Chr01	irgsp1_rep	three_prime_UTR	30431031	30431700	.	+	.	Parent=Os01t0729900-01
Chr01	irgsp1_rep	mRNA	30427176	30431744	.	+	.	ID=Os01t0729900-02;Name=Os01t0729900-02;Locus_id=Os01g0729900;Note=Conserved hypothetical protein.;Transcript_evidence=AK120504 (DDBJ%2C Best hit);ORF_evidence=B8A906 (UniProt);NIAS_FLcDNA=J013122L20;Expression=AK120504;TENOR=Os01t0729900-02;KEGG=Os01t0729900-02
Chr01	irgsp1_rep	five_prime_UTR	30427176	30427486	.	+	.	Parent=Os01t0729900-02
Chr01	irgsp1_rep	CDS	30427487	30428092	.	+	0	Parent=Os01t0729900-02
Chr01	irgsp1_rep	CDS	30428675	30428914	.	+	0	Parent=Os01t0729900-02
Chr01	irgsp1_rep	CDS	30429053	30429142	.	+	0	Parent=Os01t0729900-02
Chr01	irgsp1_rep	CDS	30429512	30429661	.	+	0	Parent=Os01t0729900-02
Chr01	irgsp1_rep	CDS	30430171	30430295	.	+	0	Parent=Os01t0729900-02
Chr01	irgsp1_rep	CDS	30430699	30430828	.	+	1	Parent=Os01t0729900-02
Chr01	irgsp1_rep	CDS	30430905	30431030	.	+	0	Parent=Os01t0729900-02
Chr01	irgsp1_rep	three_prime_UTR	30431031	30431744	.	+	.	Parent=Os01t0729900-02
Chr01	irgsp1_rep	mRNA	30427356	30431677	.	+	.	ID=Os01t0729900-03;Name=Os01t0729900-03;Locus_id=Os01g0729900;Note=Conserved hypothetical protein.;Transcript_evidence=AK104681 (DDBJ%2C Best hit),AK064793 (DDBJ%2C Best hit);ORF_evidence=B8A906 (UniProt);NIAS_FLcDNA=001-036-A05,J013000C13;Expression=AK104681;TENOR=Os01t0729900-03;KEGG=Os01t0729900-03
Chr01	irgsp1_rep	five_prime_UTR	30427356	30427486	.	+	.	Parent=Os01t0729900-03
Chr01	irgsp1_rep	CDS	30427487	30428092	.	+	0	Parent=Os01t0729900-03
Chr01	irgsp1_rep	CDS	30428675	30428914	.	+	0	Parent=Os01t0729900-03
Chr01	irgsp1_rep	CDS	30429053	30429142	.	+	0	Parent=Os01t0729900-03
Chr01	irgsp1_rep	CDS	30429512	30429661	.	+	0	Parent=Os01t0729900-03
Chr01	irgsp1_rep	CDS	30430171	30430295	.	+	0	Parent=Os01t0729900-03
Chr01	irgsp1_rep	CDS	30430699	30430828	.	+	1	Parent=Os01t0729900-03
Chr01	irgsp1_rep	CDS	30430905	30431030	.	+	0	Parent=Os01t0729900-03
Chr01	irgsp1_rep	three_prime_UTR	30431031	30431677	.	+	.	Parent=Os01t0729900-03
Chr01	irgsp1_rep	mRNA	30429512	30431700	.	+	.	ID=Os01t0729900-04;Name=Os01t0729900-04;Locus_id=Os01g0729900;Note=Similar to predicted protein.;Transcript_evidence=AK102837 (DDBJ%2C Best hit);ORF_evidence=B9EZI9 (UniProt);NIAS_FLcDNA=J033109K07;Expression=AK102837;TENOR=Os01t0729900-04;KEGG=Os01t0729900-04
Chr01	irgsp1_rep	CDS	30429512	30429661	.	+	0	Parent=Os01t0729900-04
Chr01	irgsp1_rep	CDS	30430171	30430295	.	+	0	Parent=Os01t0729900-04
Chr01	irgsp1_rep	CDS	30430699	30430828	.	+	1	Parent=Os01t0729900-04
Chr01	irgsp1_rep	CDS	30430905	30431030	.	+	0	Parent=Os01t0729900-04
Chr01	irgsp1_rep	three_prime_UTR	30431031	30431700	.	+	.	Parent=Os01t0729900-04
Chr01	irgsp1_rep	mRNA	30427306	30431384	.	-	.	ID=Os01t0729950-00;Name=Os01t0729950-00;Locus_id=Os01g0729950;Note=Hypothetical protein.;Transcript_evidence=tplb0041d23 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0729950-00
Chr01	irgsp1_rep	five_prime_UTR	30430903	30431384	.	-	.	Parent=Os01t0729950-00
Chr01	irgsp1_rep	five_prime_UTR	30430711	30430826	.	-	.	Parent=Os01t0729950-00
Chr01	irgsp1_rep	five_prime_UTR	30430185	30430303	.	-	.	Parent=Os01t0729950-00
Chr01	irgsp1_rep	five_prime_UTR	30429510	30429674	.	-	.	Parent=Os01t0729950-00
Chr01	irgsp1_rep	five_prime_UTR	30429051	30429137	.	-	.	Parent=Os01t0729950-00
Chr01	irgsp1_rep	five_prime_UTR	30428673	30428917	.	-	.	Parent=Os01t0729950-00
Chr01	irgsp1_rep	five_prime_UTR	30427732	30428090	.	-	.	Parent=Os01t0729950-00
Chr01	irgsp1_rep	CDS	30427450	30427731	.	-	0	Parent=Os01t0729950-00
Chr01	irgsp1_rep	three_prime_UTR	30427306	30427449	.	-	.	Parent=Os01t0729950-00
Chr01	irgsp1_rep	mRNA	30447427	30449206	.	-	.	ID=Os01t0730100-01;Name=Os01t0730100-01;Locus_id=Os01g0730100;Oryzabase Gene Symbol Synonym(s)=OsFbox035%2C OsFbox35%2C Os_F0556;Oryzabase Gene Name Synonym(s)=F-box protein 35;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK064757 (DDBJ%2C Best hit);ORF_evidence=A2ZXH8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),FBD (IPR013596),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-120-G10;Oryzabase=16835;Expression=AK064757;TENOR=Os01t0730100-01;KEGG=Os01t0730100-01
Chr01	irgsp1_rep	five_prime_UTR	30449147	30449206	.	-	.	Parent=Os01t0730100-01
Chr01	irgsp1_rep	CDS	30448340	30449146	.	-	0	Parent=Os01t0730100-01
Chr01	irgsp1_rep	CDS	30448065	30448205	.	-	0	Parent=Os01t0730100-01
Chr01	irgsp1_rep	CDS	30447559	30447945	.	-	0	Parent=Os01t0730100-01
Chr01	irgsp1_rep	three_prime_UTR	30447427	30447558	.	-	.	Parent=Os01t0730100-01
Chr01	irgsp1_rep	mRNA	30453353	30455330	.	-	.	ID=Os01t0730200-01;Name=Os01t0730200-01;Locus_id=Os01g0730200;Oryzabase Gene Symbol Synonym(s)=OsFbox036%2C OsFbox36%2C Os_F0051;Oryzabase Gene Name Synonym(s)=F-box protein 36;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK070812 (DDBJ%2C Best hit);ORF_evidence=B8A907 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023072M07;Oryzabase=16836;TENOR=Os01t0730200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	30455330	30455330	.	-	.	Parent=Os01t0730200-01
Chr01	irgsp1_rep	CDS	30454292	30455329	.	-	0	Parent=Os01t0730200-01
Chr01	irgsp1_rep	CDS	30454157	30454198	.	-	0	Parent=Os01t0730200-01
Chr01	irgsp1_rep	three_prime_UTR	30454058	30454156	.	-	.	Parent=Os01t0730200-01
Chr01	irgsp1_rep	three_prime_UTR	30453353	30453929	.	-	.	Parent=Os01t0730200-01
Chr01	irgsp1_rep	mRNA	30460007	30461593	.	+	.	ID=Os01t0730300-01;Name=Os01t0730300-01;Locus_id=Os01g0730300;CGSNL Gene Symbol=TPS3;CGSNL Gene Name=TREHALOSE-6-PHOSPHATE SYNTHASE 3;Oryzabase Gene Symbol Synonym(s)=OsTPS3;Note=Similar to predicted protein.;Transcript_evidence=AK109542 (DDBJ%2C Best hit);ORF_evidence=B2ZAS1 (UniProt);GO=Biological Process: trehalose biosynthetic process (GO:0005992),Molecular Function: catalytic activity (GO:0003824);InterPro=Glycosyl transferase%2C family 20 (IPR001830);NIAS_FLcDNA=002-120-B04;Oryzabase=9042;TENOR=Os01t0730300-01
Chr01	irgsp1_rep	five_prime_UTR	30460007	30460148	.	+	.	Parent=Os01t0730300-01
Chr01	irgsp1_rep	CDS	30460149	30461593	.	+	0	Parent=Os01t0730300-01
Chr01	irgsp1_rep	mRNA	30460007	30464402	.	+	.	ID=Os01t0730300-02;Name=Os01t0730300-02;Locus_id=Os01g0730300;CGSNL Gene Symbol=TPS3;CGSNL Gene Name=TREHALOSE-6-PHOSPHATE SYNTHASE 3;Oryzabase Gene Symbol Synonym(s)=OsTPS3;Note=HAD-superfamily hydrolase subfamily IIB protein.;Transcript_evidence=AK101207 (DDBJ%2C Best hit);ORF_evidence=B2ZAS1 (UniProt);GO=Biological Process: trehalose biosynthetic process (GO:0005992),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Glycosyl transferase%2C family 20 (IPR001830),Trehalose-phosphatase (IPR003337),HAD-superfamily hydrolase%2C subfamily IIB (IPR006379),HAD-like domain (IPR023214);NIAS_FLcDNA=J033031A01;Oryzabase=9042;Expression=AK101207;TENOR=Os01t0730300-02;KEGG=Os01t0730300-02
Chr01	irgsp1_rep	five_prime_UTR	30460007	30460148	.	+	.	Parent=Os01t0730300-02
Chr01	irgsp1_rep	CDS	30460149	30462184	.	+	0	Parent=Os01t0730300-02
Chr01	irgsp1_rep	CDS	30463055	30463328	.	+	1	Parent=Os01t0730300-02
Chr01	irgsp1_rep	CDS	30463734	30464060	.	+	0	Parent=Os01t0730300-02
Chr01	irgsp1_rep	three_prime_UTR	30464061	30464402	.	+	.	Parent=Os01t0730300-02
Chr01	irgsp1_rep	mRNA	30460748	30464477	.	+	.	ID=Os01t0730300-03;Name=Os01t0730300-03;Locus_id=Os01g0730300;CGSNL Gene Symbol=TPS3;CGSNL Gene Name=TREHALOSE-6-PHOSPHATE SYNTHASE 3;Oryzabase Gene Symbol Synonym(s)=OsTPS3;Note=Similar to predicted protein.;Transcript_evidence=AK105417 (DDBJ%2C Best hit);ORF_evidence=B2ZAQ8 (UniProt);GO=Biological Process: trehalose biosynthetic process (GO:0005992),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Glycosyl transferase%2C family 20 (IPR001830),Trehalose-phosphatase (IPR003337),HAD-superfamily hydrolase%2C subfamily IIB (IPR006379),HAD-like domain (IPR023214);NIAS_FLcDNA=001-124-A05;Oryzabase=9042;Expression=AK105417;TENOR=Os01t0730300-03;KEGG=Os01t0730300-03
Chr01	irgsp1_rep	five_prime_UTR	30460748	30460748	.	+	.	Parent=Os01t0730300-03
Chr01	irgsp1_rep	CDS	30460749	30462184	.	+	0	Parent=Os01t0730300-03
Chr01	irgsp1_rep	CDS	30463055	30463328	.	+	1	Parent=Os01t0730300-03
Chr01	irgsp1_rep	CDS	30463734	30464060	.	+	0	Parent=Os01t0730300-03
Chr01	irgsp1_rep	three_prime_UTR	30464061	30464477	.	+	.	Parent=Os01t0730300-03
Chr01	irgsp1_rep	mRNA	30466032	30468115	.	-	.	ID=Os01t0730400-01;Name=Os01t0730400-01;Locus_id=Os01g0730400;Oryzabase Gene Symbol Synonym(s)=OsCEP6%2C CEP6;Oryzabase Gene Name Synonym(s)=C-TERMINALLY ENCODED PEPTIDE 6;Note=Conserved hypothetical protein.;Transcript_evidence=AK102464 (DDBJ%2C Best hit);ORF_evidence=A2ZXI1 (UniProt);NIAS_FLcDNA=J033094D23;Oryzabase=20955;TENOR=Os01t0730400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	30468114	30468115	.	-	.	Parent=Os01t0730400-01
Chr01	irgsp1_rep	CDS	30467820	30468113	.	-	0	Parent=Os01t0730400-01
Chr01	irgsp1_rep	three_prime_UTR	30466032	30467819	.	-	.	Parent=Os01t0730400-01
Chr01	irgsp1_rep	mRNA	30472512	30472939	.	-	.	ID=Os01t0730450-00;Name=Os01t0730450-00;Locus_id=Os01g0730450;Note=Hypothetical protein.;Transcript_evidence=EU943032 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0730450-00
Chr01	irgsp1_rep	five_prime_UTR	30472939	30472939	.	-	.	Parent=Os01t0730450-00
Chr01	irgsp1_rep	CDS	30472805	30472938	.	-	0	Parent=Os01t0730450-00
Chr01	irgsp1_rep	CDS	30472609	30472753	.	-	1	Parent=Os01t0730450-00
Chr01	irgsp1_rep	three_prime_UTR	30472512	30472608	.	-	.	Parent=Os01t0730450-00
Chr01	irgsp1_rep	mRNA	30472593	30475205	.	+	.	ID=Os01t0730500-01;Name=Os01t0730500-01;Locus_id=Os01g0730500;Oryzabase Gene Symbol Synonym(s)=OsDjC13;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C13%2C rice DJC76 homolog;Note=Similar to Ferredoxin (Bacterial type ferredoxin family).;Transcript_evidence=AK100064 (DDBJ%2C Best hit);ORF_evidence=B6SQG7 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=3Fe-4S ferredoxin (IPR001080),Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),4Fe-4S ferredoxin%2C iron-sulpur binding domain (IPR017896);NIAS_FLcDNA=J013160L20;Oryzabase=12170;Expression=AK100064;TENOR=Os01t0730500-01;KEGG=Os01t0730500-01
Chr01	irgsp1_rep	five_prime_UTR	30472593	30472697	.	+	.	Parent=Os01t0730500-01
Chr01	irgsp1_rep	CDS	30472698	30472952	.	+	0	Parent=Os01t0730500-01
Chr01	irgsp1_rep	CDS	30473143	30473271	.	+	0	Parent=Os01t0730500-01
Chr01	irgsp1_rep	CDS	30473373	30473502	.	+	0	Parent=Os01t0730500-01
Chr01	irgsp1_rep	CDS	30473603	30473723	.	+	2	Parent=Os01t0730500-01
Chr01	irgsp1_rep	CDS	30473853	30473934	.	+	1	Parent=Os01t0730500-01
Chr01	irgsp1_rep	CDS	30474076	30474126	.	+	0	Parent=Os01t0730500-01
Chr01	irgsp1_rep	CDS	30474393	30474431	.	+	0	Parent=Os01t0730500-01
Chr01	irgsp1_rep	CDS	30474578	30474671	.	+	0	Parent=Os01t0730500-01
Chr01	irgsp1_rep	CDS	30474788	30474915	.	+	2	Parent=Os01t0730500-01
Chr01	irgsp1_rep	three_prime_UTR	30474916	30475205	.	+	.	Parent=Os01t0730500-01
Chr01	irgsp1_rep	mRNA	30475352	30476061	.	-	.	ID=Os01t0730600-00;Name=Os01t0730600-00;Locus_id=Os01g0730600;Note=Conserved hypothetical protein.;Transcript_evidence=EU959379 (DDBJ);ORF_evidence=NP_001172553.1 (RefSeq);TENOR=Os01t0730600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	30475396	30476061	.	-	0	Parent=Os01t0730600-00
Chr01	irgsp1_rep	three_prime_UTR	30475352	30475395	.	-	.	Parent=Os01t0730600-00
Chr01	irgsp1_rep	mRNA	30480114	30481849	.	-	.	ID=Os01t0730700-01;Name=Os01t0730700-01;Locus_id=Os01g0730700;CGSNL Gene Symbol=WRKY14;CGSNL Gene Name=WRKY GENE 14;Oryzabase Gene Symbol Synonym(s)=OsWRKY14;Oryzabase Gene Name Synonym(s)=Rice WRKY gene14;Note=WRKY transcription factor 14 (WRKY14).;Transcript_evidence=AK109770 (DDBJ%2C Best hit);ORF_evidence=B6U8Z0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);NIAS_FLcDNA=002-147-A06;Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6525;Expression=AK109770;TENOR=Os01t0730700-01;KEGG=Os01t0730700-01
Chr01	irgsp1_rep	five_prime_UTR	30481750	30481849	.	-	.	Parent=Os01t0730700-01
Chr01	irgsp1_rep	CDS	30481409	30481749	.	-	0	Parent=Os01t0730700-01
Chr01	irgsp1_rep	CDS	30480657	30481275	.	-	1	Parent=Os01t0730700-01
Chr01	irgsp1_rep	three_prime_UTR	30480114	30480656	.	-	.	Parent=Os01t0730700-01
Chr01	irgsp1_rep	mRNA	30488192	30490382	.	+	.	ID=Os01t0730800-01;Name=Os01t0730800-01;Locus_id=Os01g0730800;Note=Mpv17/PMP22 family protein.;Transcript_evidence=AK070733 (DDBJ%2C Best hit);ORF_evidence=NP_001152597.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Mpv17/PMP22 (IPR007248);NIAS_FLcDNA=J023063A20;Expression=AK070733;TENOR=Os01t0730800-01;KEGG=Os01t0730800-01
Chr01	irgsp1_rep	five_prime_UTR	30488192	30488257	.	+	.	Parent=Os01t0730800-01
Chr01	irgsp1_rep	CDS	30488258	30488560	.	+	0	Parent=Os01t0730800-01
Chr01	irgsp1_rep	CDS	30489043	30489198	.	+	0	Parent=Os01t0730800-01
Chr01	irgsp1_rep	CDS	30489289	30489421	.	+	0	Parent=Os01t0730800-01
Chr01	irgsp1_rep	CDS	30489513	30489552	.	+	2	Parent=Os01t0730800-01
Chr01	irgsp1_rep	CDS	30489765	30489852	.	+	1	Parent=Os01t0730800-01
Chr01	irgsp1_rep	three_prime_UTR	30489853	30489872	.	+	.	Parent=Os01t0730800-01
Chr01	irgsp1_rep	three_prime_UTR	30490038	30490382	.	+	.	Parent=Os01t0730800-01
Chr01	irgsp1_rep	mRNA	30489764	30490382	.	+	.	ID=Os01t0730800-02;Name=Os01t0730800-02;Locus_id=Os01g0730800;Note=Similar to peroxisomal membrane protein 2.;Transcript_evidence=AK059617 (DDBJ%2C Best hit);ORF_evidence=NP_001152597.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Mpv17/PMP22 (IPR007248);NIAS_FLcDNA=001-030-G08;Expression=AK059617;TENOR=Os01t0730800-02;KEGG=Os01t0730800-02
Chr01	irgsp1_rep	five_prime_UTR	30489764	30489765	.	+	.	Parent=Os01t0730800-02
Chr01	irgsp1_rep	CDS	30489766	30489852	.	+	0	Parent=Os01t0730800-02
Chr01	irgsp1_rep	three_prime_UTR	30489853	30489872	.	+	.	Parent=Os01t0730800-02
Chr01	irgsp1_rep	three_prime_UTR	30490038	30490382	.	+	.	Parent=Os01t0730800-02
Chr01	irgsp1_rep	mRNA	30494842	30497106	.	-	.	ID=Os01t0730900-01;Name=Os01t0730900-01;Locus_id=Os01g0730900;Note=DNA polymerase III%2C subunits gamma and tau domain containing protein.;Transcript_evidence=AK120751 (DDBJ%2C Best hit);ORF_evidence=E5GC26 (UniProt);GO=Biological Process: DNA replication (GO:0006260),Cellular Component: DNA polymerase III complex (GO:0009360),Molecular Function: DNA-directed DNA polymerase activity (GO:0003887),Molecular Function: ATP binding (GO:0005524);InterPro=DNA polymerase III%2C subunit gamma/ tau (IPR012763);NIAS_FLcDNA=J023004P12;Expression=AK120751;TENOR=Os01t0730900-01;KEGG=Os01t0730900-01
Chr01	irgsp1_rep	five_prime_UTR	30496723	30497106	.	-	.	Parent=Os01t0730900-01
Chr01	irgsp1_rep	CDS	30494854	30496722	.	-	0	Parent=Os01t0730900-01
Chr01	irgsp1_rep	three_prime_UTR	30494842	30494853	.	-	.	Parent=Os01t0730900-01
Chr01	irgsp1_rep	mRNA	30501605	30507193	.	-	.	ID=Os01t0731000-01;Name=Os01t0731000-01;Locus_id=Os01g0731000;Note=Similar to ubiquitin domain containing 1.;Transcript_evidence=AK240687 (DDBJ%2C Best hit);ORF_evidence=NP_001151929.1 (RefSeq);NIAS_FLcDNA=J043004N04;TENOR=Os01t0731000-01;KEGG=Os01t0731000-01
Chr01	irgsp1_rep	five_prime_UTR	30507031	30507193	.	-	.	Parent=Os01t0731000-01
Chr01	irgsp1_rep	CDS	30506997	30507030	.	-	0	Parent=Os01t0731000-01
Chr01	irgsp1_rep	CDS	30503605	30503727	.	-	2	Parent=Os01t0731000-01
Chr01	irgsp1_rep	CDS	30502938	30503057	.	-	2	Parent=Os01t0731000-01
Chr01	irgsp1_rep	CDS	30501880	30501944	.	-	2	Parent=Os01t0731000-01
Chr01	irgsp1_rep	three_prime_UTR	30501605	30501879	.	-	.	Parent=Os01t0731000-01
Chr01	irgsp1_rep	mRNA	30512281	30513627	.	-	.	ID=Os01t0731100-01;Name=Os01t0731100-01;Locus_id=Os01g0731100;Note=Similar to Pathogen-related protein.;Transcript_evidence=AK109409 (DDBJ%2C Best hit),AK061471 (DDBJ%2C Best hit),AK106037 (DDBJ%2C Best hit);ORF_evidence=NP_001151686.1 (RefSeq);NIAS_FLcDNA=006-303-D12,006-308-E01,001-206-D09;Expression=AK109409;TENOR=Os01t0731100-01;KEGG=Os01t0731100-01
Chr01	irgsp1_rep	five_prime_UTR	30513562	30513627	.	-	.	Parent=Os01t0731100-01
Chr01	irgsp1_rep	CDS	30513415	30513561	.	-	0	Parent=Os01t0731100-01
Chr01	irgsp1_rep	CDS	30512877	30513308	.	-	0	Parent=Os01t0731100-01
Chr01	irgsp1_rep	CDS	30512542	30512763	.	-	0	Parent=Os01t0731100-01
Chr01	irgsp1_rep	three_prime_UTR	30512281	30512541	.	-	.	Parent=Os01t0731100-01
Chr01	irgsp1_rep	mRNA	30512871	30513685	.	+	.	ID=Os01t0731150-00;Name=Os01t0731150-00;Locus_id=Os01g0731150;Note=Hypothetical protein.;Transcript_evidence=AK366258 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0731150-00
Chr01	irgsp1_rep	CDS	30512871	30513509	.	+	0	Parent=Os01t0731150-00
Chr01	irgsp1_rep	three_prime_UTR	30513510	30513685	.	+	.	Parent=Os01t0731150-00
Chr01	irgsp1_rep	mRNA	30516127	30517387	.	-	.	ID=Os01t0731201-01;Name=Os01t0731201-01;Locus_id=Os01g0731201;Note=Hypothetical gene.;Transcript_evidence=AK289241 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100076B12;TENOR=Os01t0731201-01;KEGG=Os01t0731201-01
Chr01	irgsp1_rep	five_prime_UTR	30516953	30517387	.	-	.	Parent=Os01t0731201-01
Chr01	irgsp1_rep	CDS	30516692	30516952	.	-	0	Parent=Os01t0731201-01
Chr01	irgsp1_rep	three_prime_UTR	30516127	30516691	.	-	.	Parent=Os01t0731201-01
Chr01	irgsp1_rep	mRNA	30520488	30521565	.	-	.	ID=Os01t0731600-00;Name=Os01t0731600-00;Locus_id=Os01g0731600;Note=Similar to pathogen-related protein.;Transcript_evidence=EU967166 (DDBJ);ORF_evidence=NP_001151686.1 (RefSeq);TENOR=Os01t0731600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	30521425	30521565	.	-	0	Parent=Os01t0731600-00
Chr01	irgsp1_rep	CDS	30520488	30521330	.	-	0	Parent=Os01t0731600-00
Chr01	irgsp1_rep	mRNA	30520893	30521662	.	+	.	ID=Os01t0731700-00;Name=Os01t0731700-00;Locus_id=Os01g0731700;Note=Hypothetical protein.;Transcript_evidence=AK366258 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0731700-00
Chr01	irgsp1_rep	five_prime_UTR	30520893	30521358	.	+	.	Parent=Os01t0731700-00
Chr01	irgsp1_rep	CDS	30521359	30521631	.	+	0	Parent=Os01t0731700-00
Chr01	irgsp1_rep	three_prime_UTR	30521632	30521662	.	+	.	Parent=Os01t0731700-00
Chr01	irgsp1_rep	mRNA	30525387	30529059	.	-	.	ID=Os01t0731800-01;Name=Os01t0731800-01;Locus_id=Os01g0731800;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK121474 (DDBJ%2C Best hit);ORF_evidence=B9EZJ4 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-CH-type (IPR011016),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J023148N13;Expression=AK121474;TENOR=Os01t0731800-01;KEGG=Os01t0731800-01
Chr01	irgsp1_rep	five_prime_UTR	30528847	30529059	.	-	.	Parent=Os01t0731800-01
Chr01	irgsp1_rep	CDS	30528593	30528846	.	-	0	Parent=Os01t0731800-01
Chr01	irgsp1_rep	CDS	30527575	30527720	.	-	1	Parent=Os01t0731800-01
Chr01	irgsp1_rep	CDS	30526314	30526348	.	-	2	Parent=Os01t0731800-01
Chr01	irgsp1_rep	CDS	30525687	30525701	.	-	0	Parent=Os01t0731800-01
Chr01	irgsp1_rep	three_prime_UTR	30525387	30525686	.	-	.	Parent=Os01t0731800-01
Chr01	irgsp1_rep	mRNA	30524993	30528912	.	-	.	ID=Os01t0731800-02;Name=Os01t0731800-02;Locus_id=Os01g0731800;Note=Hypothetical conserved gene.;Transcript_evidence=AK288900 (DDBJ%2C Best hit);ORF_evidence=B9EZJ4 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-CH-type (IPR011016),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J090080J20;TENOR=Os01t0731800-02;KEGG=Os01t0731800-02
Chr01	irgsp1_rep	five_prime_UTR	30528847	30528912	.	-	.	Parent=Os01t0731800-02
Chr01	irgsp1_rep	CDS	30528593	30528846	.	-	0	Parent=Os01t0731800-02
Chr01	irgsp1_rep	CDS	30527504	30527720	.	-	1	Parent=Os01t0731800-02
Chr01	irgsp1_rep	three_prime_UTR	30524993	30527503	.	-	.	Parent=Os01t0731800-02
Chr01	irgsp1_rep	mRNA	30533116	30533592	.	-	.	ID=Os01t0732000-01;Name=Os01t0732000-01;Locus_id=Os01g0732000;Note=Similar to Mitochondrial import receptor subunit TOM7-1 (Translocase of outer membrane 7 kDa subunit 1).;Transcript_evidence=AK062498 (DDBJ%2C Best hit);ORF_evidence=NP_001150221.1 (RefSeq);GO=Biological Process: intracellular protein transport (GO:0006886),Cellular Component: mitochondrial outer membrane (GO:0005741),Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450);InterPro=Mitochondrial outer membrane translocase complex%2C subunit Tom7 (IPR012621);NIAS_FLcDNA=001-104-A04;Expression=AK062498;TENOR=Os01t0732000-01;KEGG=Os01t0732000-01
Chr01	irgsp1_rep	five_prime_UTR	30533561	30533592	.	-	.	Parent=Os01t0732000-01
Chr01	irgsp1_rep	CDS	30533348	30533560	.	-	0	Parent=Os01t0732000-01
Chr01	irgsp1_rep	three_prime_UTR	30533116	30533347	.	-	.	Parent=Os01t0732000-01
Chr01	irgsp1_rep	mRNA	30533818	30536908	.	+	.	ID=Os01t0732100-00;Name=Os01t0732100-00;Locus_id=Os01g0732100;Note=Conserved hypothetical protein.;Transcript_evidence=CT837519 (DDBJ%2C Best hit);ORF_evidence=NP_001044153.2 (RefSeq);TENOR=Os01t0732100-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	30533818	30533818	.	+	.	Parent=Os01t0732100-00
Chr01	irgsp1_rep	CDS	30533819	30534028	.	+	0	Parent=Os01t0732100-00
Chr01	irgsp1_rep	CDS	30536426	30536473	.	+	0	Parent=Os01t0732100-00
Chr01	irgsp1_rep	three_prime_UTR	30536474	30536908	.	+	.	Parent=Os01t0732100-00
Chr01	irgsp1_rep	mRNA	30537136	30541871	.	+	.	ID=Os01t0732200-01;Name=Os01t0732200-01;Locus_id=Os01g0732200;Note=GTP-binding protein%2C HSR1-related domain containing protein.;Transcript_evidence=AK067563 (DDBJ%2C Best hit);ORF_evidence=B4FAB3 (UniProt);GO=Biological Process: barrier septum formation (GO:0000917),Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=GTP-binding domain%2C HSR1-related (IPR002917),GTP-binding protein%2C ribosome biogenesis%2C YsxC (IPR019987);NIAS_FLcDNA=J013111I12;Expression=AK067563;TENOR=Os01t0732200-01;KEGG=Os01t0732200-01
Chr01	irgsp1_rep	five_prime_UTR	30537136	30537227	.	+	.	Parent=Os01t0732200-01
Chr01	irgsp1_rep	CDS	30537228	30537726	.	+	0	Parent=Os01t0732200-01
Chr01	irgsp1_rep	CDS	30537916	30537985	.	+	2	Parent=Os01t0732200-01
Chr01	irgsp1_rep	CDS	30538240	30538402	.	+	1	Parent=Os01t0732200-01
Chr01	irgsp1_rep	CDS	30540801	30541019	.	+	0	Parent=Os01t0732200-01
Chr01	irgsp1_rep	three_prime_UTR	30541020	30541242	.	+	.	Parent=Os01t0732200-01
Chr01	irgsp1_rep	three_prime_UTR	30541526	30541871	.	+	.	Parent=Os01t0732200-01
Chr01	irgsp1_rep	mRNA	30542800	30544054	.	+	.	ID=Os01t0732300-01;Name=Os01t0732300-01;Locus_id=Os01g0732300;RAP-DB Gene Symbol Synonym(s)=OFP3;RAP-DB Gene Name Synonym(s)=OVATE FAMILY PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsOFP3%2C OsOFP04;Oryzabase Gene Name Synonym(s)=OVATE family protein 3%2C ovate family protein 4%2C OVATE-domain containing protein 4;Note=Ovate family protein%2C Suppression of brassinosteroid (BR) synthesis and signaling;Transcript_evidence=AK108391;ORF_evidence=Q5JM77;InterPro=Ovate  protein family%2C C-terminal (IPR006458);NIAS_FLcDNA=002-142-F05;Manual Curation=January 20%2C 2020;Literature_PMID=31950543;Oryzabase=18299;Expression=AK108391;TENOR=Os01t0732300-01;KEGG=Os01t0732300-01;Subcellular location=cytoplasm (GO:0005737), nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	30542800	30542913	.	+	.	Parent=Os01t0732300-01
Chr01	irgsp1_rep	CDS	30542914	30543885	.	+	0	Parent=Os01t0732300-01
Chr01	irgsp1_rep	three_prime_UTR	30543886	30544054	.	+	.	Parent=Os01t0732300-01
Chr01	irgsp1_rep	mRNA	30561150	30564436	.	+	.	ID=Os01t0732700-01;Name=Os01t0732700-01;Locus_id=Os01g0732700;RAP-DB Gene Symbol Synonym(s)=YUCCA3%2C OsYUCCA3%2C OsYUC3;RAP-DB Gene Name Synonym(s)=YUCCA-LIKE GENE 3%2C (YUCCA-like gene);CGSNL Gene Symbol=YUCCA3;CGSNL Gene Name=YUCCA-LIKE GENE 3;Oryzabase Gene Symbol Synonym(s)=OsYUCCA3%2C OsYUC3%2C YUC3;Oryzabase Gene Name Synonym(s)=(YUCCA-like gene);Note=Flavin monooxygenase-like enzyme %2C Auxin biosynthesis;Transcript_evidence=AK243630 (DDBJ);ORF_evidence=B9EZJ8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: flavin-containing monooxygenase activity (GO:0004499),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=Pyridine nucleotide-disulphide oxidoreductase%2C class-II (IPR000103),FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR013027),NAD(P)-binding domain (IPR016040),Flavin monooxygenase-like (IPR020946);NIAS_FLcDNA=J100087C03;Manual Curation=June 29%2C 2010;Literature_PMID=17220367;Oryzabase=7440;TENOR=Os01t0732700-01;KEGG=Os01t0732700-01 (EC:1.14.13.-)
Chr01	irgsp1_rep	five_prime_UTR	30561150	30561475	.	+	.	Parent=Os01t0732700-01
Chr01	irgsp1_rep	CDS	30561476	30562234	.	+	0	Parent=Os01t0732700-01
Chr01	irgsp1_rep	CDS	30563250	30563498	.	+	0	Parent=Os01t0732700-01
Chr01	irgsp1_rep	CDS	30563631	30563753	.	+	0	Parent=Os01t0732700-01
Chr01	irgsp1_rep	CDS	30563929	30564126	.	+	0	Parent=Os01t0732700-01
Chr01	irgsp1_rep	three_prime_UTR	30564127	30564436	.	+	.	Parent=Os01t0732700-01
Chr01	irgsp1_rep	mRNA	30561476	30564126	.	+	.	ID=Os01t0732700-02;Name=Os01t0732700-02;Locus_id=Os01g0732700;RAP-DB Gene Symbol Synonym(s)=YUCCA3%2C OsYUCCA3;RAP-DB Gene Name Synonym(s)=YUCCA-LIKE GENE 3%2C YUCCA-like gene 3;CGSNL Gene Symbol=YUCCA3;CGSNL Gene Name=YUCCA-LIKE GENE 3;Oryzabase Gene Symbol Synonym(s)=OsYUCCA3%2C OsYUC3%2C YUC3;Oryzabase Gene Name Synonym(s)=(YUCCA-like gene);Note=Flavin monooxygenase-like enzyme %2C Auxin biosynthesis;Transcript_evidence=AP003309_BAD87432_35;ORF_evidence=Q5JM75 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: N%2CN-dimethylaniline monooxygenase activity (GO:0004499),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=Pyridine nucleotide-disulphide oxidoreductase%2C class-II (IPR000103),FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR013027),Flavin monooxygenase-like (IPR020946);Manual Curation=June 29%2C 2010;Literature_PMID=17220367;Oryzabase=7440;TENOR=Os01t0732700-02
Chr01	irgsp1_rep	CDS	30561476	30562222	.	+	0	Parent=Os01t0732700-02
Chr01	irgsp1_rep	CDS	30563250	30563498	.	+	0	Parent=Os01t0732700-02
Chr01	irgsp1_rep	CDS	30563631	30563753	.	+	0	Parent=Os01t0732700-02
Chr01	irgsp1_rep	CDS	30563929	30564126	.	+	0	Parent=Os01t0732700-02
Chr01	irgsp1_rep	mRNA	30573184	30574499	.	-	.	ID=Os01t0732801-01;Name=Os01t0732801-01;Locus_id=Os01g0732801;Note=Conserved hypothetical protein.;Transcript_evidence=AK243303 (DDBJ%2C Best hit);ORF_evidence=NP_001172555.1 (RefSeq);NIAS_FLcDNA=J100054K11;TENOR=Os01t0732801-01;KEGG=Os01t0732801-01
Chr01	irgsp1_rep	five_prime_UTR	30574433	30574499	.	-	.	Parent=Os01t0732801-01
Chr01	irgsp1_rep	CDS	30574088	30574432	.	-	0	Parent=Os01t0732801-01
Chr01	irgsp1_rep	three_prime_UTR	30573184	30574087	.	-	.	Parent=Os01t0732801-01
Chr01	irgsp1_rep	mRNA	30574619	30575643	.	-	.	ID=Os01t0733001-00;Name=Os01t0733001-00;Locus_id=Os01g0733001;Note=Similar to NRAMP3 (NRAMP metal ion transporter 3)%3B manganese ion transmembrane transporter/ metal ion transmembrane transporter.;Transcript_evidence=CT837791 (DDBJ%2C Best hit);ORF_evidence=NP_179896.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Natural resistance-associated macrophage protein (IPR001046);TENOR=Os01t0733001-00;KEGG=Os01t0733001-00
Chr01	irgsp1_rep	five_prime_UTR	30575233	30575643	.	-	.	Parent=Os01t0733001-00
Chr01	irgsp1_rep	CDS	30574861	30575232	.	-	0	Parent=Os01t0733001-00
Chr01	irgsp1_rep	three_prime_UTR	30574792	30574860	.	-	.	Parent=Os01t0733001-00
Chr01	irgsp1_rep	three_prime_UTR	30574619	30574732	.	-	.	Parent=Os01t0733001-00
Chr01	irgsp1_rep	mRNA	30580475	30585457	.	-	.	ID=Os01t0733100-00;Name=Os01t0733100-00;Locus_id=Os01g0733100;Note=Conserved hypothetical protein.;Transcript_evidence=FP101635 (DDBJ);ORF_evidence=Q5JL63 (UniProt);TENOR=Os01t0733100-00
Chr01	irgsp1_rep	five_prime_UTR	30585424	30585457	.	-	.	Parent=Os01t0733100-00
Chr01	irgsp1_rep	CDS	30585256	30585423	.	-	0	Parent=Os01t0733100-00
Chr01	irgsp1_rep	CDS	30580475	30580870	.	-	0	Parent=Os01t0733100-00
Chr01	irgsp1_rep	mRNA	30582485	30583694	.	+	.	ID=Os01t0733200-01;Name=Os01t0733200-01;Locus_id=Os01g0733200;RAP-DB Gene Symbol Synonym(s)=OsHsfC1b;RAP-DB Gene Name Synonym(s)=Heat shock factor C1b;CGSNL Gene Symbol=HSFC1B;CGSNL Gene Name=HEAT STRESS TRANSCRIPTION FACTOR C1b;Oryzabase Gene Symbol Synonym(s)=OsHsfC1b%2C HsfC1b%2C HSF03%2C OsHsf-03%2C OsHSF3%2C HSF3%2C HSF11%2C rHsf11;Oryzabase Gene Name Synonym(s)=Heat stress transcription factor C1b%2C Heat stress transcription factor C-1b%2C Heat stress transcription factor 3;Note=Heat shock factor%2C Transcription factor%2C ABA-mediated salt stress tolerance%2C Response to osmotic stress;Transcript_evidence=AK066316;ORF_evidence=Q942D6;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA-binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Cellular Component: nucleus (GO:0005634);InterPro=Winged helix-like DNA-binding domain superfamily (IPR036388),Winged helix DNA-binding domain superfamily (IPR036390),Heat shock factor (HSF)-type%2C DNA-binding (IPR000232);NIAS_FLcDNA=J013066G03;Manual Curation=August 6%2C 2020;Literature_PMID=22616023;Oryzabase=8569;Expression=AK066316;TENOR=Os01t0733200-01;KEGG=Os01t0733200-01;Subcellular location=nucleus (GO:0005634) [mainly], cytosol (GO:0005829)
Chr01	irgsp1_rep	five_prime_UTR	30582485	30582635	.	+	.	Parent=Os01t0733200-01
Chr01	irgsp1_rep	CDS	30582636	30582884	.	+	0	Parent=Os01t0733200-01
Chr01	irgsp1_rep	CDS	30582994	30583497	.	+	0	Parent=Os01t0733200-01
Chr01	irgsp1_rep	three_prime_UTR	30583498	30583694	.	+	.	Parent=Os01t0733200-01
Chr01	irgsp1_rep	mRNA	30589859	30592513	.	+	.	ID=Os01t0733500-01;Name=Os01t0733500-01;Locus_id=Os01g0733500;Oryzabase Gene Symbol Synonym(s)=RD22%2C OsBURP03%2C OsBURP3;Oryzabase Gene Name Synonym(s)=BURP domain-containing protein 3;Note=Similar to Dehydration-induced protein RD22-like protein 1.;Transcript_evidence=AK065358 (DDBJ%2C Best hit),AK059056 (DDBJ%2C Best hit),AK106043 (DDBJ%2C Best hit);ORF_evidence=Q942D4 (UniProt);InterPro=BURP (IPR004873);NIAS_FLcDNA=J013011A15,001-021-F04,001-206-E03;Oryzabase=12363;Expression=AK065358;TENOR=Os01t0733500-01;KEGG=Os01t0733500-01
Chr01	irgsp1_rep	five_prime_UTR	30589859	30589932	.	+	.	Parent=Os01t0733500-01
Chr01	irgsp1_rep	CDS	30589933	30589971	.	+	0	Parent=Os01t0733500-01
Chr01	irgsp1_rep	CDS	30590541	30590649	.	+	0	Parent=Os01t0733500-01
Chr01	irgsp1_rep	CDS	30591119	30592260	.	+	2	Parent=Os01t0733500-01
Chr01	irgsp1_rep	three_prime_UTR	30592261	30592513	.	+	.	Parent=Os01t0733500-01
Chr01	irgsp1_rep	mRNA	30593524	30598517	.	-	.	ID=Os01t0733600-01;Name=Os01t0733600-01;Locus_id=Os01g0733600;Note=Flavoprotein pyridine nucleotide cytoChrome reductase domain containing protein.;Transcript_evidence=AK066744 (DDBJ%2C Best hit);ORF_evidence=B6T7V0 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Flavodoxin (IPR001094),Oxidoreductase FAD/NAD(P)-binding (IPR001433),Flavoprotein pyridine nucleotide cytoChrome reductase (IPR001709),FAD-binding%2C type 1 (IPR003097),Flavodoxin/nitric oxide synthase (IPR008254),Ferredoxin reductase-type FAD-binding domain (IPR017927),Riboflavin synthase-like beta-barrel (IPR017938),NADPH-cytoChrome p450 reductase%2C FAD-binding%2C alpha-helical domain-3 (IPR023173);NIAS_FLcDNA=J013088B01;Expression=AK066744;TENOR=Os01t0733600-01;KEGG=Os01t0733600-01
Chr01	irgsp1_rep	five_prime_UTR	30598448	30598517	.	-	.	Parent=Os01t0733600-01
Chr01	irgsp1_rep	CDS	30598295	30598447	.	-	0	Parent=Os01t0733600-01
Chr01	irgsp1_rep	CDS	30598116	30598193	.	-	0	Parent=Os01t0733600-01
Chr01	irgsp1_rep	CDS	30597921	30598025	.	-	0	Parent=Os01t0733600-01
Chr01	irgsp1_rep	CDS	30597221	30597312	.	-	0	Parent=Os01t0733600-01
Chr01	irgsp1_rep	CDS	30596863	30597044	.	-	1	Parent=Os01t0733600-01
Chr01	irgsp1_rep	CDS	30596682	30596773	.	-	2	Parent=Os01t0733600-01
Chr01	irgsp1_rep	CDS	30596042	30596116	.	-	0	Parent=Os01t0733600-01
Chr01	irgsp1_rep	CDS	30595834	30595944	.	-	0	Parent=Os01t0733600-01
Chr01	irgsp1_rep	CDS	30595338	30595464	.	-	0	Parent=Os01t0733600-01
Chr01	irgsp1_rep	CDS	30595105	30595223	.	-	2	Parent=Os01t0733600-01
Chr01	irgsp1_rep	CDS	30594738	30594954	.	-	0	Parent=Os01t0733600-01
Chr01	irgsp1_rep	CDS	30594011	30594540	.	-	2	Parent=Os01t0733600-01
Chr01	irgsp1_rep	three_prime_UTR	30593524	30594010	.	-	.	Parent=Os01t0733600-01
Chr01	irgsp1_rep	mRNA	30594012	30598449	.	+	.	ID=Os01t0733700-00;Name=Os01t0733700-00;Locus_id=Os01g0733700;Note=Hypothetical protein.;Transcript_evidence=tplb0034m17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0733700-00
Chr01	irgsp1_rep	five_prime_UTR	30594012	30594528	.	+	.	Parent=Os01t0733700-00
Chr01	irgsp1_rep	five_prime_UTR	30594728	30594951	.	+	.	Parent=Os01t0733700-00
Chr01	irgsp1_rep	five_prime_UTR	30595102	30595223	.	+	.	Parent=Os01t0733700-00
Chr01	irgsp1_rep	five_prime_UTR	30595338	30595449	.	+	.	Parent=Os01t0733700-00
Chr01	irgsp1_rep	five_prime_UTR	30595824	30595936	.	+	.	Parent=Os01t0733700-00
Chr01	irgsp1_rep	five_prime_UTR	30596035	30596096	.	+	.	Parent=Os01t0733700-00
Chr01	irgsp1_rep	five_prime_UTR	30596668	30596791	.	+	.	Parent=Os01t0733700-00
Chr01	irgsp1_rep	five_prime_UTR	30596887	30597047	.	+	.	Parent=Os01t0733700-00
Chr01	irgsp1_rep	five_prime_UTR	30597228	30597312	.	+	.	Parent=Os01t0733700-00
Chr01	irgsp1_rep	five_prime_UTR	30597921	30598021	.	+	.	Parent=Os01t0733700-00
Chr01	irgsp1_rep	five_prime_UTR	30598111	30598119	.	+	.	Parent=Os01t0733700-00
Chr01	irgsp1_rep	CDS	30598120	30598193	.	+	0	Parent=Os01t0733700-00
Chr01	irgsp1_rep	CDS	30598295	30598449	.	+	1	Parent=Os01t0733700-00
Chr01	irgsp1_rep	mRNA	30600797	30602030	.	-	.	ID=Os01t0733801-00;Name=Os01t0733801-00;Locus_id=Os01g0733801;Note=Hypothetical conserved gene.;Transcript_evidence=CT837830 (DDBJ%2C Best hit);ORF_evidence=Q5JL60 (UniProt);TENOR=Os01t0733801-00;KEGG=Os01t0733801-00
Chr01	irgsp1_rep	five_prime_UTR	30601834	30602030	.	-	.	Parent=Os01t0733801-00
Chr01	irgsp1_rep	CDS	30601501	30601833	.	-	0	Parent=Os01t0733801-00
Chr01	irgsp1_rep	three_prime_UTR	30600797	30601500	.	-	.	Parent=Os01t0733801-00
Chr01	irgsp1_rep	mRNA	30604326	30608077	.	+	.	ID=Os01t0734000-01;Name=Os01t0734000-01;Locus_id=Os01g0734000;CGSNL Gene Symbol=WRKY23;CGSNL Gene Name=WRKY GENE 23;Oryzabase Gene Symbol Synonym(s)=OsWRKY23;Oryzabase Gene Name Synonym(s)=Rice WRKY gene23;Note=Similar to WRKY DNA binding protein.;Transcript_evidence=AK108909 (DDBJ%2C Best hit);ORF_evidence=NP_001148624.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);NIAS_FLcDNA=002-152-G06;Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6535;Expression=AK108909;TENOR=Os01t0734000-01;KEGG=Os01t0734000-01
Chr01	irgsp1_rep	five_prime_UTR	30604326	30604344	.	+	.	Parent=Os01t0734000-01
Chr01	irgsp1_rep	CDS	30604345	30604931	.	+	0	Parent=Os01t0734000-01
Chr01	irgsp1_rep	CDS	30607560	30607737	.	+	1	Parent=Os01t0734000-01
Chr01	irgsp1_rep	three_prime_UTR	30607738	30608077	.	+	.	Parent=Os01t0734000-01
Chr01	irgsp1_rep	mRNA	30608366	30610446	.	+	.	ID=Os01t0734100-01;Name=Os01t0734100-01;Locus_id=Os01g0734100;Note=Similar to 50S ribosomal protein L20.;Transcript_evidence=AK064618 (DDBJ%2C Best hit);ORF_evidence=B8A922 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735),Molecular Function: rRNA binding (GO:0019843);InterPro=Ribosomal protein L20 (IPR005813);NIAS_FLcDNA=002-113-C12;Expression=AK064618;TENOR=Os01t0734100-01;KEGG=Os01t0734100-01
Chr01	irgsp1_rep	five_prime_UTR	30608366	30608501	.	+	.	Parent=Os01t0734100-01
Chr01	irgsp1_rep	five_prime_UTR	30609561	30609603	.	+	.	Parent=Os01t0734100-01
Chr01	irgsp1_rep	CDS	30609604	30609789	.	+	0	Parent=Os01t0734100-01
Chr01	irgsp1_rep	CDS	30609970	30610152	.	+	0	Parent=Os01t0734100-01
Chr01	irgsp1_rep	three_prime_UTR	30610153	30610446	.	+	.	Parent=Os01t0734100-01
Chr01	irgsp1_rep	mRNA	30621883	30623119	.	-	.	ID=Os01t0734150-00;Name=Os01t0734150-00;Locus_id=Os01g0734150;Note=Hypothetical gene.;Transcript_evidence=EU950506 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0734150-00
Chr01	irgsp1_rep	five_prime_UTR	30622619	30623119	.	-	.	Parent=Os01t0734150-00
Chr01	irgsp1_rep	CDS	30621883	30622618	.	-	0	Parent=Os01t0734150-00
Chr01	irgsp1_rep	mRNA	30621870	30634405	.	+	.	ID=Os01t0734200-01;Name=Os01t0734200-01;Locus_id=Os01g0734200;RAP-DB Gene Symbol Synonym(s)=OsRbohA%2C OsNOX2;RAP-DB Gene Name Synonym(s)=respiratory burst oxidase homologue A%2C NADPH oxidase 2;CGSNL Gene Symbol=RBOHA;CGSNL Gene Name=RESPIRATORY BURST OXIDASE HOMOLOG A;Oryzabase Gene Symbol Synonym(s)=rbohA%2C OsrbohA%2C Os rbohA%2C OsRbohA%2C OsNox2%2C Nox2%2C OsRboh2%2C Rboh2;Oryzabase Gene Name Synonym(s)=Respiratory Burst Oxidase Homolog A%2C respiratory burst oxidase homologue A%2C NADPH oxidase 2;Note=Plasma membrane NADPH oxidase%2C Developmental regulation%2C Drought-stress response;Transcript_evidence=AK103747 (truncated),XM_015765928;ORF_evidence=XP_015621414;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on NAD(P)H%2C oxygen as acceptor (GO:0050664),Cellular Component: membrane (GO:0016020);InterPro=EF-hand domain pair (IPR011992),Riboflavin synthase-like beta-barrel (IPR017938),Ferredoxin-NADP reductase (FNR)%2C nucleotide-binding domain (IPR039261),CytoChrome b245%2C heavy chain (IPR000778),NADPH oxidase Respiratory burst (IPR013623),EF-hand domain (IPR002048),Ferric reductase transmembrane component-like domain (IPR013130),FAD-binding domain%2C ferredoxin reductase-type (IPR017927),FAD-binding 8 (IPR013112),Ferric reductase%2C NAD binding domain (IPR013121),EF-Hand 1%2C calcium-binding site (IPR018247);NIAS_FLcDNA=J033138P16 (truncated);Manual Curation=July 14%2C 2020;Literature_PMID=27465023,26400148,8811865;Oryzabase=10484,11860;Expression=AK103747;TENOR=Os01t0734200-00,Os01t0734466-01;KEGG=Os01t0734200-00,Os01t0734466-01;Subcellular location=plasma membrane (GO:0005886)
Chr01	irgsp1_rep	five_prime_UTR	30621870	30622076	.	+	.	Parent=Os01t0734200-01
Chr01	irgsp1_rep	CDS	30622077	30622722	.	+	0	Parent=Os01t0734200-01
Chr01	irgsp1_rep	CDS	30622814	30622973	.	+	2	Parent=Os01t0734200-01
Chr01	irgsp1_rep	CDS	30623092	30623140	.	+	1	Parent=Os01t0734200-01
Chr01	irgsp1_rep	CDS	30624303	30624416	.	+	0	Parent=Os01t0734200-01
Chr01	irgsp1_rep	CDS	30630590	30631012	.	+	0	Parent=Os01t0734200-01
Chr01	irgsp1_rep	CDS	30631265	30631648	.	+	0	Parent=Os01t0734200-01
Chr01	irgsp1_rep	CDS	30631733	30631828	.	+	0	Parent=Os01t0734200-01
Chr01	irgsp1_rep	CDS	30631903	30632018	.	+	0	Parent=Os01t0734200-01
Chr01	irgsp1_rep	CDS	30632173	30632340	.	+	1	Parent=Os01t0734200-01
Chr01	irgsp1_rep	CDS	30632427	30632586	.	+	1	Parent=Os01t0734200-01
Chr01	irgsp1_rep	CDS	30632741	30632938	.	+	0	Parent=Os01t0734200-01
Chr01	irgsp1_rep	CDS	30633046	30633174	.	+	0	Parent=Os01t0734200-01
Chr01	irgsp1_rep	CDS	30633337	30633415	.	+	0	Parent=Os01t0734200-01
Chr01	irgsp1_rep	CDS	30633752	30633861	.	+	2	Parent=Os01t0734200-01
Chr01	irgsp1_rep	three_prime_UTR	30633862	30634405	.	+	.	Parent=Os01t0734200-01
Chr01	irgsp1_rep	mRNA	30630662	30633179	.	-	.	ID=Os01t0734399-00;Name=Os01t0734399-00;Locus_id=Os01g0734399;Note=Hypothetical protein.;Transcript_evidence=tplb0025i04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0734399-00
Chr01	irgsp1_rep	five_prime_UTR	30633024	30633179	.	-	.	Parent=Os01t0734399-00
Chr01	irgsp1_rep	five_prime_UTR	30632818	30632921	.	-	.	Parent=Os01t0734399-00
Chr01	irgsp1_rep	five_prime_UTR	30632382	30632605	.	-	.	Parent=Os01t0734399-00
Chr01	irgsp1_rep	five_prime_UTR	30632155	30632308	.	-	.	Parent=Os01t0734399-00
Chr01	irgsp1_rep	five_prime_UTR	30631880	30632005	.	-	.	Parent=Os01t0734399-00
Chr01	irgsp1_rep	five_prime_UTR	30631462	30631709	.	-	.	Parent=Os01t0734399-00
Chr01	irgsp1_rep	CDS	30631267	30631461	.	-	0	Parent=Os01t0734399-00
Chr01	irgsp1_rep	CDS	30630859	30631014	.	-	0	Parent=Os01t0734399-00
Chr01	irgsp1_rep	three_prime_UTR	30630662	30630858	.	-	.	Parent=Os01t0734399-00
Chr01	irgsp1_rep	mRNA	30646787	30647149	.	+	.	ID=Os01t0734501-00;Name=Os01t0734501-00;Locus_id=Os01g0734501;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001172557.1 (RefSeq);TENOR=Os01t0734501-00;KEGG=Os01t0734501-00
Chr01	irgsp1_rep	CDS	30646787	30647149	.	+	0	Parent=Os01t0734501-00
Chr01	irgsp1_rep	mRNA	30647512	30649342	.	+	.	ID=Os01t0734600-01;Name=Os01t0734600-01;Locus_id=Os01g0734600;CGSNL Gene Symbol=UGT706E1;CGSNL Gene Name=UDP-DEPENDENT GLYCOSYLTRANSFERASE 706E1;Oryzabase Gene Symbol Synonym(s)=OsUGT706E1;Oryzabase Gene Name Synonym(s)=UDP-dependent glycosyltransferase 706E1;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK103129 (DDBJ%2C Best hit),AK065450 (DDBJ%2C Best hit),AK119562 (DDBJ%2C Best hit);ORF_evidence=A2ZXK1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J033119O19,J013008B02,002-113-B10;Oryzabase=22213;Expression=AK103129;TENOR=Os01t0734600-01;KEGG=Os01t0734600-01
Chr01	irgsp1_rep	five_prime_UTR	30647512	30647628	.	+	.	Parent=Os01t0734600-01
Chr01	irgsp1_rep	CDS	30647629	30649068	.	+	0	Parent=Os01t0734600-01
Chr01	irgsp1_rep	three_prime_UTR	30649069	30649342	.	+	.	Parent=Os01t0734600-01
Chr01	irgsp1_rep	mRNA	30655306	30657083	.	+	.	ID=Os01t0734800-01;Name=Os01t0734800-01;Locus_id=Os01g0734800;CGSNL Gene Symbol=UGT706F1;CGSNL Gene Name=UDP-DEPENDENT GLYCOSYLTRANSFERASE 706F1;Oryzabase Gene Symbol Synonym(s)=OsUGT706F1;Oryzabase Gene Name Synonym(s)=UDP-dependent glycosyltransferase 706F1;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK102415 (DDBJ%2C Best hit);ORF_evidence=B4FG90 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J033093B13;Oryzabase=22214;Expression=AK102415;TENOR=Os01t0734800-01;KEGG=Os01t0734800-01
Chr01	irgsp1_rep	five_prime_UTR	30655306	30655413	.	+	.	Parent=Os01t0734800-01
Chr01	irgsp1_rep	CDS	30655414	30656850	.	+	0	Parent=Os01t0734800-01
Chr01	irgsp1_rep	three_prime_UTR	30656851	30657083	.	+	.	Parent=Os01t0734800-01
Chr01	irgsp1_rep	mRNA	30655354	30657017	.	+	.	ID=Os01t0734800-02;Name=Os01t0734800-02;Locus_id=Os01g0734800;CGSNL Gene Symbol=UGT706F1;CGSNL Gene Name=UDP-DEPENDENT GLYCOSYLTRANSFERASE 706F1;Oryzabase Gene Symbol Synonym(s)=OsUGT706F1;Oryzabase Gene Name Synonym(s)=UDP-dependent glycosyltransferase 706F1;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK061830 (DDBJ%2C Best hit);ORF_evidence=B4FG90 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=001-040-D01;Oryzabase=22214;Expression=AK061830;TENOR=Os01t0734800-02;KEGG=Os01t0734800-02
Chr01	irgsp1_rep	five_prime_UTR	30655354	30655413	.	+	.	Parent=Os01t0734800-02
Chr01	irgsp1_rep	CDS	30655414	30656850	.	+	0	Parent=Os01t0734800-02
Chr01	irgsp1_rep	three_prime_UTR	30656851	30657017	.	+	.	Parent=Os01t0734800-02
Chr01	irgsp1_rep	mRNA	30666642	30668299	.	+	.	ID=Os01t0735300-01;Name=Os01t0735300-01;Locus_id=Os01g0735300;CGSNL Gene Symbol=UGT88C3;CGSNL Gene Name=UDP-DEPENDENT GLYCOSYLTRANSFERASE 88C3;Oryzabase Gene Symbol Synonym(s)=OsUGT88C3;Oryzabase Gene Name Synonym(s)=UDP-dependent glycosyltransferase 88C3;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK106947 (DDBJ%2C Best hit);ORF_evidence=B6SUB6 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=002-119-D12;Oryzabase=22215;Expression=AK106947;TENOR=Os01t0735300-01;KEGG=Os01t0735300-01
Chr01	irgsp1_rep	five_prime_UTR	30666642	30666706	.	+	.	Parent=Os01t0735300-01
Chr01	irgsp1_rep	CDS	30666707	30668182	.	+	0	Parent=Os01t0735300-01
Chr01	irgsp1_rep	three_prime_UTR	30668183	30668299	.	+	.	Parent=Os01t0735300-01
Chr01	irgsp1_rep	mRNA	30675494	30677104	.	-	.	ID=Os01t0735450-01;Name=Os01t0735450-01;Locus_id=Os01g0735450;Note=Hypothetical protein.;Transcript_evidence=AK241697 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065195P17;TENOR=Os01t0735450-01;KEGG=Os01t0735450-01
Chr01	irgsp1_rep	five_prime_UTR	30676888	30677104	.	-	.	Parent=Os01t0735450-01
Chr01	irgsp1_rep	CDS	30676309	30676887	.	-	0	Parent=Os01t0735450-01
Chr01	irgsp1_rep	three_prime_UTR	30675494	30676308	.	-	.	Parent=Os01t0735450-01
Chr01	irgsp1_rep	mRNA	30675734	30677421	.	+	.	ID=Os01t0735500-01;Name=Os01t0735500-01;Locus_id=Os01g0735500;CGSNL Gene Symbol=UGT88C2;CGSNL Gene Name=UDP-DEPENDENT GLYCOSYLTRANSFERASE 88C2;Oryzabase Gene Symbol Synonym(s)=OsUGT88C2;Oryzabase Gene Name Synonym(s)=UDP-dependent glycosyltransferase 88C2;Note=Conserved hypothetical protein.;Transcript_evidence=AK108266 (DDBJ%2C Best hit);ORF_evidence=A2WUU0 (UniProt);NIAS_FLcDNA=002-141-B10;Oryzabase=22216;TENOR=Os01t0735500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	30675734	30675756	.	+	.	Parent=Os01t0735500-01
Chr01	irgsp1_rep	CDS	30675757	30676062	.	+	0	Parent=Os01t0735500-01
Chr01	irgsp1_rep	three_prime_UTR	30676063	30677421	.	+	.	Parent=Os01t0735500-01
Chr01	irgsp1_rep	mRNA	30682077	30682578	.	+	.	ID=Os01t0735632-01;Name=Os01t0735632-01;Locus_id=Os01g0735632;Note=Non-protein coding transcript.;Transcript_evidence=AK240754 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J053026C23;TENOR=Os01t0735632-01
Chr01	irgsp1_rep	exon	30682077	30682578	.	+	.	Parent=Os01t0735632-01
Chr01	irgsp1_rep	mRNA	30689850	30691452	.	-	.	ID=Os01t0735900-01;Name=Os01t0735900-01;Locus_id=Os01g0735900;CGSNL Gene Symbol=UGT706B1;CGSNL Gene Name=UDP-DEPENDENT GLYCOSYLTRANSFERASE 706B1;Oryzabase Gene Symbol Synonym(s)=OsUGT706B1;Oryzabase Gene Name Synonym(s)=UDP-dependent glycosyltransferase 706B1;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK107156 (DDBJ%2C Best hit);ORF_evidence=NP_001149283.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=002-124-E08;Oryzabase=22217;Expression=AK107156;TENOR=Os01t0735900-01;KEGG=Os01t0735900-01
Chr01	irgsp1_rep	five_prime_UTR	30691428	30691452	.	-	.	Parent=Os01t0735900-01
Chr01	irgsp1_rep	CDS	30689991	30691427	.	-	0	Parent=Os01t0735900-01
Chr01	irgsp1_rep	three_prime_UTR	30689850	30689990	.	-	.	Parent=Os01t0735900-01
Chr01	irgsp1_rep	mRNA	30690139	30691601	.	+	.	ID=Os01t0736000-01;Name=Os01t0736000-01;Locus_id=Os01g0736000;Note=HMG-I and HMG-Y%2C DNA-binding domain containing protein.;Transcript_evidence=AK108695 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-149-G02;Expression=AK108695;TENOR=Os01t0736000-01;KEGG=Os01t0736000-01
Chr01	irgsp1_rep	five_prime_UTR	30690139	30690412	.	+	.	Parent=Os01t0736000-01
Chr01	irgsp1_rep	CDS	30690413	30690976	.	+	0	Parent=Os01t0736000-01
Chr01	irgsp1_rep	three_prime_UTR	30690977	30691601	.	+	.	Parent=Os01t0736000-01
Chr01	irgsp1_rep	mRNA	30694998	30696704	.	-	.	ID=Os01t0736100-01;Name=Os01t0736100-01;Locus_id=Os01g0736100;CGSNL Gene Symbol=UGT706C1;CGSNL Gene Name=UDP-DEPENDENT GLUCOSYLTRANSFERASE 706C1;Oryzabase Gene Symbol Synonym(s)=OsUGT706C1;Oryzabase Gene Name Synonym(s)=UDP-dependent glucosyltransferase 706C1%2C UDP-dependent glycosyltransferase 706C1;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK103355 (DDBJ%2C Best hit);ORF_evidence=NP_001148567.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J033126K03;Oryzabase=18347;Expression=AK103355;TENOR=Os01t0736100-01;KEGG=Os01t0736100-01
Chr01	irgsp1_rep	five_prime_UTR	30696623	30696704	.	-	.	Parent=Os01t0736100-01
Chr01	irgsp1_rep	CDS	30695198	30696622	.	-	0	Parent=Os01t0736100-01
Chr01	irgsp1_rep	three_prime_UTR	30694998	30695197	.	-	.	Parent=Os01t0736100-01
Chr01	irgsp1_rep	mRNA	30694936	30696652	.	-	.	ID=Os01t0736100-02;Name=Os01t0736100-02;Locus_id=Os01g0736100;CGSNL Gene Symbol=UGT706C1;CGSNL Gene Name=UDP-DEPENDENT GLUCOSYLTRANSFERASE 706C1;Oryzabase Gene Symbol Synonym(s)=OsUGT706C1;Oryzabase Gene Name Synonym(s)=UDP-dependent glucosyltransferase 706C1%2C UDP-dependent glycosyltransferase 706C1;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK064298 (DDBJ%2C Best hit),AK099365 (DDBJ%2C Best hit);ORF_evidence=NP_001148567.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=002-107-A05,J033048K03;Oryzabase=18347;Expression=AK064298;TENOR=Os01t0736100-02;KEGG=Os01t0736100-02
Chr01	irgsp1_rep	five_prime_UTR	30696623	30696652	.	-	.	Parent=Os01t0736100-02
Chr01	irgsp1_rep	CDS	30695198	30696622	.	-	0	Parent=Os01t0736100-02
Chr01	irgsp1_rep	three_prime_UTR	30694936	30695197	.	-	.	Parent=Os01t0736100-02
Chr01	irgsp1_rep	mRNA	30712173	30713844	.	-	.	ID=Os01t0736300-01;Name=Os01t0736300-01;Locus_id=Os01g0736300;RAP-DB Gene Symbol Synonym(s)=OsUGT706D1;RAP-DB Gene Name Synonym(s)=UDP-dependent glucosyltransferase 706D1%2C flavone 7-O-glucosyltransferase;CGSNL Gene Symbol=UGT706D1;CGSNL Gene Name=UDP-DEPENDENT GLUCOSYLTRANSFERASE 706D1;Oryzabase Gene Symbol Synonym(s)=UGT%2C OsUGT706D1;Oryzabase Gene Name Synonym(s)=UDP-dependent glucosyltransferase 706D1%2C flavone 7-O-glucosyltransferase;Note=Flavone 7-O-glucosyltransferase%2C UDP-dependent glucosyltransferase%2C UV-B tolerance;Transcript_evidence=AK100519;ORF_evidence=Q942B3;GO=Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213),UDP-glycosyltransferase family%2C conserved site (IPR035595);NIAS_FLcDNA=J023100J15;Manual Curation=January 8%2C 2020;Literature_PMID=29213047,17363107;Oryzabase=18233;TENOR=Os01t0736300-01
Chr01	irgsp1_rep	five_prime_UTR	30713762	30713844	.	-	.	Parent=Os01t0736300-01
Chr01	irgsp1_rep	CDS	30712346	30713761	.	-	0	Parent=Os01t0736300-01
Chr01	irgsp1_rep	three_prime_UTR	30712173	30712345	.	-	.	Parent=Os01t0736300-01
Chr01	irgsp1_rep	mRNA	30712401	30717667	.	+	.	ID=Os01t0736400-01;Name=Os01t0736400-01;Locus_id=Os01g0736400;Note=Similar to 8-amino-7-oxononanoate synthase.;Transcript_evidence=AK100689 (DDBJ%2C Best hit);ORF_evidence=B6TFA9 (UniProt);NIAS_FLcDNA=J023114D10;TENOR=Os01t0736400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	30712401	30713833	.	+	.	Parent=Os01t0736400-01
Chr01	irgsp1_rep	five_prime_UTR	30713915	30714094	.	+	.	Parent=Os01t0736400-01
Chr01	irgsp1_rep	CDS	30714095	30714290	.	+	0	Parent=Os01t0736400-01
Chr01	irgsp1_rep	CDS	30714588	30714700	.	+	2	Parent=Os01t0736400-01
Chr01	irgsp1_rep	CDS	30714836	30714874	.	+	0	Parent=Os01t0736400-01
Chr01	irgsp1_rep	three_prime_UTR	30714875	30714939	.	+	.	Parent=Os01t0736400-01
Chr01	irgsp1_rep	three_prime_UTR	30715047	30715285	.	+	.	Parent=Os01t0736400-01
Chr01	irgsp1_rep	three_prime_UTR	30715373	30715412	.	+	.	Parent=Os01t0736400-01
Chr01	irgsp1_rep	three_prime_UTR	30715514	30715603	.	+	.	Parent=Os01t0736400-01
Chr01	irgsp1_rep	three_prime_UTR	30715684	30715817	.	+	.	Parent=Os01t0736400-01
Chr01	irgsp1_rep	three_prime_UTR	30716413	30716501	.	+	.	Parent=Os01t0736400-01
Chr01	irgsp1_rep	three_prime_UTR	30716708	30716858	.	+	.	Parent=Os01t0736400-01
Chr01	irgsp1_rep	three_prime_UTR	30716936	30717004	.	+	.	Parent=Os01t0736400-01
Chr01	irgsp1_rep	three_prime_UTR	30717302	30717667	.	+	.	Parent=Os01t0736400-01
Chr01	irgsp1_rep	mRNA	30714012	30717687	.	+	.	ID=Os01t0736400-02;Name=Os01t0736400-02;Locus_id=Os01g0736400;Note=Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 domain containing protein.;Transcript_evidence=AK069723 (DDBJ%2C Best hit);ORF_evidence=B6TFA9 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferase%2C class I/classII (IPR004839),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J023027A08;Expression=AK069723;TENOR=Os01t0736400-02;KEGG=Os01t0736400-02 (EC:2.3.1.47)
Chr01	irgsp1_rep	five_prime_UTR	30714012	30714094	.	+	.	Parent=Os01t0736400-02
Chr01	irgsp1_rep	CDS	30714095	30714290	.	+	0	Parent=Os01t0736400-02
Chr01	irgsp1_rep	CDS	30714588	30714700	.	+	2	Parent=Os01t0736400-02
Chr01	irgsp1_rep	CDS	30714832	30714939	.	+	0	Parent=Os01t0736400-02
Chr01	irgsp1_rep	CDS	30715047	30715285	.	+	0	Parent=Os01t0736400-02
Chr01	irgsp1_rep	CDS	30715373	30715412	.	+	1	Parent=Os01t0736400-02
Chr01	irgsp1_rep	CDS	30715514	30715603	.	+	0	Parent=Os01t0736400-02
Chr01	irgsp1_rep	CDS	30715684	30715817	.	+	0	Parent=Os01t0736400-02
Chr01	irgsp1_rep	CDS	30716413	30716501	.	+	1	Parent=Os01t0736400-02
Chr01	irgsp1_rep	CDS	30716708	30716858	.	+	2	Parent=Os01t0736400-02
Chr01	irgsp1_rep	CDS	30716936	30717004	.	+	1	Parent=Os01t0736400-02
Chr01	irgsp1_rep	CDS	30717302	30717425	.	+	1	Parent=Os01t0736400-02
Chr01	irgsp1_rep	three_prime_UTR	30717426	30717687	.	+	.	Parent=Os01t0736400-02
Chr01	irgsp1_rep	mRNA	30714016	30714706	.	-	.	ID=Os01t0736450-00;Name=Os01t0736450-00;Locus_id=Os01g0736450;Note=Hypothetical gene.;Transcript_evidence=EU940765 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0736450-00
Chr01	irgsp1_rep	five_prime_UTR	30714558	30714706	.	-	.	Parent=Os01t0736450-00
Chr01	irgsp1_rep	five_prime_UTR	30714339	30714354	.	-	.	Parent=Os01t0736450-00
Chr01	irgsp1_rep	CDS	30714016	30714338	.	-	0	Parent=Os01t0736450-00
Chr01	irgsp1_rep	mRNA	30718930	30719952	.	+	.	ID=Os01t0736500-01;Name=Os01t0736500-01;Locus_id=Os01g0736500;Note=Similar to harpin-induced protein.;Transcript_evidence=AK111351 (DDBJ%2C Best hit);ORF_evidence=NP_001147295.1 (RefSeq);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=002-181-G07;TENOR=Os01t0736500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	30718930	30718994	.	+	.	Parent=Os01t0736500-01
Chr01	irgsp1_rep	CDS	30718995	30719765	.	+	0	Parent=Os01t0736500-01
Chr01	irgsp1_rep	three_prime_UTR	30719766	30719952	.	+	.	Parent=Os01t0736500-01
Chr01	irgsp1_rep	mRNA	30727331	30731409	.	+	.	ID=Os01t0736551-01;Name=Os01t0736551-01;Locus_id=Os01g0736551;Note=Hypothetical gene.;Transcript_evidence=AK288841 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090074I18;TENOR=Os01t0736551-01;KEGG=Os01t0736551-01
Chr01	irgsp1_rep	five_prime_UTR	30727331	30728062	.	+	.	Parent=Os01t0736551-01
Chr01	irgsp1_rep	five_prime_UTR	30728174	30730635	.	+	.	Parent=Os01t0736551-01
Chr01	irgsp1_rep	CDS	30730636	30731127	.	+	0	Parent=Os01t0736551-01
Chr01	irgsp1_rep	three_prime_UTR	30731128	30731409	.	+	.	Parent=Os01t0736551-01
Chr01	irgsp1_rep	mRNA	30730320	30731337	.	-	.	ID=Os01t0736600-01;Name=Os01t0736600-01;Locus_id=Os01g0736600;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK099546 (DDBJ%2C Best hit),AK105189 (DDBJ%2C Best hit);ORF_evidence=NP_001147642.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J013033B12,001-107-A12;TENOR=Os01t0736600-01
Chr01	irgsp1_rep	five_prime_UTR	30731239	30731337	.	-	.	Parent=Os01t0736600-01
Chr01	irgsp1_rep	CDS	30730645	30731238	.	-	0	Parent=Os01t0736600-01
Chr01	irgsp1_rep	three_prime_UTR	30730320	30730644	.	-	.	Parent=Os01t0736600-01
Chr01	irgsp1_rep	mRNA	30735203	30735270	.	-	.	ID=Os01t0736750-00;Name=Os01t0736750-00;Locus_id=Os01g0736750;Note=Non-protein coding transcript.;Transcript_evidence=X06284 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0736750-00
Chr01	irgsp1_rep	exon	30735203	30735270	.	-	.	Parent=Os01t0736750-00
Chr01	irgsp1_rep	mRNA	30738700	30740720	.	+	.	ID=Os01t0736900-01;Name=Os01t0736900-01;Locus_id=Os01g0736900;Note=Reticulon family protein.;Transcript_evidence=AK121245 (DDBJ%2C Best hit),AK065226 (DDBJ%2C Best hit);ORF_evidence=B6T616 (UniProt);GO=Cellular Component: endoplasmic reticulum (GO:0005783);InterPro=Reticulon (IPR003388);NIAS_FLcDNA=J023099G09,J013002H02;TENOR=Os01t0736900-01
Chr01	irgsp1_rep	five_prime_UTR	30738700	30738832	.	+	.	Parent=Os01t0736900-01
Chr01	irgsp1_rep	CDS	30738833	30739034	.	+	0	Parent=Os01t0736900-01
Chr01	irgsp1_rep	CDS	30739432	30739612	.	+	2	Parent=Os01t0736900-01
Chr01	irgsp1_rep	CDS	30739736	30739877	.	+	1	Parent=Os01t0736900-01
Chr01	irgsp1_rep	CDS	30739970	30740039	.	+	0	Parent=Os01t0736900-01
Chr01	irgsp1_rep	CDS	30740125	30740291	.	+	2	Parent=Os01t0736900-01
Chr01	irgsp1_rep	three_prime_UTR	30740292	30740720	.	+	.	Parent=Os01t0736900-01
Chr01	irgsp1_rep	mRNA	30739585	30740615	.	+	.	ID=Os01t0736900-02;Name=Os01t0736900-02;Locus_id=Os01g0736900;Note=Similar to seed maturation protein.;Transcript_evidence=AK062151 (DDBJ%2C Best hit);ORF_evidence=B6T616 (UniProt);GO=Cellular Component: endoplasmic reticulum (GO:0005783);InterPro=Reticulon (IPR003388);NIAS_FLcDNA=001-045-H05;Expression=AK062151;TENOR=Os01t0736900-02;KEGG=Os01t0736900-02
Chr01	irgsp1_rep	five_prime_UTR	30739585	30739586	.	+	.	Parent=Os01t0736900-02
Chr01	irgsp1_rep	CDS	30739587	30739612	.	+	0	Parent=Os01t0736900-02
Chr01	irgsp1_rep	CDS	30739736	30739877	.	+	1	Parent=Os01t0736900-02
Chr01	irgsp1_rep	CDS	30739970	30740039	.	+	0	Parent=Os01t0736900-02
Chr01	irgsp1_rep	CDS	30740125	30740291	.	+	2	Parent=Os01t0736900-02
Chr01	irgsp1_rep	three_prime_UTR	30740292	30740615	.	+	.	Parent=Os01t0736900-02
Chr01	irgsp1_rep	mRNA	30738968	30739558	.	-	.	ID=Os01t0737000-00;Name=Os01t0737000-00;Locus_id=Os01g0737000;Note=Hypothetical protein.;Transcript_evidence=BT086850 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0737000-00
Chr01	irgsp1_rep	CDS	30739366	30739558	.	-	0	Parent=Os01t0737000-00
Chr01	irgsp1_rep	CDS	30739077	30739132	.	-	2	Parent=Os01t0737000-00
Chr01	irgsp1_rep	three_prime_UTR	30738968	30739076	.	-	.	Parent=Os01t0737000-00
Chr01	irgsp1_rep	mRNA	30748300	30749169	.	-	.	ID=Os01t0737100-01;Name=Os01t0737100-01;Locus_id=Os01g0737100;Note=Conserved hypothetical protein.;Transcript_evidence=AK108262 (DDBJ%2C Best hit);ORF_evidence=A2ZXL4 (UniProt);NIAS_FLcDNA=002-141-B06;TENOR=Os01t0737100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	30749169	30749169	.	-	.	Parent=Os01t0737100-01
Chr01	irgsp1_rep	CDS	30748458	30749168	.	-	0	Parent=Os01t0737100-01
Chr01	irgsp1_rep	three_prime_UTR	30748300	30748457	.	-	.	Parent=Os01t0737100-01
Chr01	irgsp1_rep	mRNA	30753453	30753560	.	+	.	ID=Os01t0737200-00;Name=Os01t0737200-00;Locus_id=Os01g0737200;Note=Non-protein coding transcript.;Transcript_evidence=AY131234 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0737200-00
Chr01	irgsp1_rep	exon	30753453	30753560	.	+	.	Parent=Os01t0737200-00
Chr01	irgsp1_rep	mRNA	30753801	30758956	.	+	.	ID=Os01t0737300-00;Name=Os01t0737300-00;Locus_id=Os01g0737300;Note=Similar to Phosphoesterase.;Transcript_evidence=ab initio prediction;ORF_evidence=B6U9S1 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PARP-type (IPR001510),HAD-superfamily hydrolase%2C subfamily IIIA (IPR006549),Polynucleotide 3'-phosphatase (IPR006551),Polynucleotide kinase 3 phosphatase%2C central region (IPR013954),Polynucleotide kinase 3-phosphatase (IPR015636),HAD-like domain (IPR023214);TENOR=Os01t0737300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	30753801	30753860	.	+	0	Parent=Os01t0737300-00
Chr01	irgsp1_rep	CDS	30754296	30754592	.	+	0	Parent=Os01t0737300-00
Chr01	irgsp1_rep	CDS	30755224	30755286	.	+	0	Parent=Os01t0737300-00
Chr01	irgsp1_rep	CDS	30755385	30755438	.	+	0	Parent=Os01t0737300-00
Chr01	irgsp1_rep	CDS	30756296	30756367	.	+	0	Parent=Os01t0737300-00
Chr01	irgsp1_rep	CDS	30756473	30756529	.	+	0	Parent=Os01t0737300-00
Chr01	irgsp1_rep	CDS	30756902	30756978	.	+	0	Parent=Os01t0737300-00
Chr01	irgsp1_rep	CDS	30757755	30757836	.	+	1	Parent=Os01t0737300-00
Chr01	irgsp1_rep	CDS	30758327	30758443	.	+	0	Parent=Os01t0737300-00
Chr01	irgsp1_rep	CDS	30758825	30758956	.	+	0	Parent=Os01t0737300-00
Chr01	irgsp1_rep	mRNA	30759831	30761217	.	+	.	ID=Os01t0737401-01;Name=Os01t0737401-01;Locus_id=Os01g0737401;Note=Similar to diphosphonucleotide phosphatase 2.;Transcript_evidence=AK242390 (DDBJ%2C Best hit);ORF_evidence=NP_001105016.1 (RefSeq);InterPro=Polynucleotide kinase 3 phosphatase%2C central region (IPR013954),Polynucleotide kinase 3-phosphatase (IPR015636);NIAS_FLcDNA=J080058C14;TENOR=Os01t0737401-01;KEGG=Os01t0737401-01 (EC:2.7.1.78%2C EC:3.1.3.32)
Chr01	irgsp1_rep	five_prime_UTR	30759831	30759831	.	+	.	Parent=Os01t0737401-01
Chr01	irgsp1_rep	CDS	30759832	30759885	.	+	0	Parent=Os01t0737401-01
Chr01	irgsp1_rep	CDS	30760893	30760952	.	+	0	Parent=Os01t0737401-01
Chr01	irgsp1_rep	three_prime_UTR	30760953	30761217	.	+	.	Parent=Os01t0737401-01
Chr01	irgsp1_rep	mRNA	30764089	30766588	.	+	.	ID=Os01t0737500-01;Name=Os01t0737500-01;Locus_id=Os01g0737500;CGSNL Gene Symbol=ALMT5;CGSNL Gene Name=ALUMINUM-ACTIVATED MALATE TRANSPORTER 5;Oryzabase Gene Symbol Synonym(s)=OsALMT5;Oryzabase Gene Name Synonym(s)=Aluminum-activated malate transporter 5;Note=Uncharacterised protein family UPF0005 domain containing protein.;Transcript_evidence=AK105965 (DDBJ%2C Best hit);ORF_evidence=B8A929 (UniProt);GO=Biological Process: response to aluminum ion (GO:0010044);InterPro=Malate transporter%2C aliminium toerance (IPR020966);NIAS_FLcDNA=001-205-E06;Oryzabase=22154;Expression=AK105965;TENOR=Os01t0737500-01;KEGG=Os01t0737500-01
Chr01	irgsp1_rep	five_prime_UTR	30764089	30764183	.	+	.	Parent=Os01t0737500-01
Chr01	irgsp1_rep	CDS	30764184	30764514	.	+	0	Parent=Os01t0737500-01
Chr01	irgsp1_rep	CDS	30764627	30764767	.	+	2	Parent=Os01t0737500-01
Chr01	irgsp1_rep	CDS	30765012	30765281	.	+	2	Parent=Os01t0737500-01
Chr01	irgsp1_rep	CDS	30765493	30765683	.	+	2	Parent=Os01t0737500-01
Chr01	irgsp1_rep	three_prime_UTR	30765684	30765851	.	+	.	Parent=Os01t0737500-01
Chr01	irgsp1_rep	three_prime_UTR	30765963	30766588	.	+	.	Parent=Os01t0737500-01
Chr01	irgsp1_rep	mRNA	30768424	30769146	.	-	.	ID=Os01t0737550-00;Name=Os01t0737550-00;Locus_id=Os01g0737550;Note=Similar to OSIGBa0101A01.4 protein.;Transcript_evidence=BT019050 (DDBJ);ORF_evidence=Q01LW7 (UniProt);TENOR=Os01t0737550-00
Chr01	irgsp1_rep	CDS	30768424	30769146	.	-	0	Parent=Os01t0737550-00
Chr01	irgsp1_rep	mRNA	30768475	30769182	.	+	.	ID=Os01t0737600-00;Name=Os01t0737600-00;Locus_id=Os01g0737600;Note=Similar to OSIGBa0101A01.4 protein.;Transcript_evidence=EU965647 (DDBJ);ORF_evidence=Q01LW7 (UniProt);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: 3'-5' exonuclease activity (GO:0008408);InterPro=3&apos%3B-5&apos%3B exonuclease (IPR002562),Ribonuclease H-like (IPR012337);TENOR=Os01t0737600-00;KEGG=Os01t0737600-00 (EC:3.6.1.-)
Chr01	irgsp1_rep	CDS	30768475	30769101	.	+	0	Parent=Os01t0737600-00
Chr01	irgsp1_rep	three_prime_UTR	30769102	30769182	.	+	.	Parent=Os01t0737600-00
Chr01	irgsp1_rep	mRNA	30772299	30773134	.	+	.	ID=Os01t0737700-00;Name=Os01t0737700-00;Locus_id=Os01g0737700;Note=Similar to OSIGBa0101A01.4 protein.;Transcript_evidence=DQ245694 (DDBJ);ORF_evidence=Q01LW7 (UniProt);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: 3'-5' exonuclease activity (GO:0008408);InterPro=3'-5' exonuclease (IPR002562),Ribonuclease H-like (IPR012337);TENOR=Os01t0737700-00;KEGG=Os01t0737700-00
Chr01	irgsp1_rep	CDS	30772299	30773003	.	+	0	Parent=Os01t0737700-00
Chr01	irgsp1_rep	three_prime_UTR	30773004	30773134	.	+	.	Parent=Os01t0737700-00
Chr01	irgsp1_rep	mRNA	30775140	30779239	.	-	.	ID=Os01t0737800-01;Name=Os01t0737800-01;Locus_id=Os01g0737800;Note=Similar to Farnesyltransferase beta subunit.;Transcript_evidence=AK071486 (DDBJ%2C Best hit);ORF_evidence=A7J147 (UniProt);NIAS_FLcDNA=J023095H23;Expression=AK071486;TENOR=Os01t0737800-01;KEGG=Os01t0737800-01 (EC:2.5.1.58)
Chr01	irgsp1_rep	five_prime_UTR	30779230	30779239	.	-	.	Parent=Os01t0737800-01
Chr01	irgsp1_rep	CDS	30778952	30779229	.	-	0	Parent=Os01t0737800-01
Chr01	irgsp1_rep	CDS	30778551	30778641	.	-	1	Parent=Os01t0737800-01
Chr01	irgsp1_rep	three_prime_UTR	30777310	30778550	.	-	.	Parent=Os01t0737800-01
Chr01	irgsp1_rep	three_prime_UTR	30777177	30777230	.	-	.	Parent=Os01t0737800-01
Chr01	irgsp1_rep	three_prime_UTR	30777020	30777071	.	-	.	Parent=Os01t0737800-01
Chr01	irgsp1_rep	three_prime_UTR	30776889	30776953	.	-	.	Parent=Os01t0737800-01
Chr01	irgsp1_rep	three_prime_UTR	30776584	30776805	.	-	.	Parent=Os01t0737800-01
Chr01	irgsp1_rep	three_prime_UTR	30776233	30776319	.	-	.	Parent=Os01t0737800-01
Chr01	irgsp1_rep	three_prime_UTR	30776043	30776160	.	-	.	Parent=Os01t0737800-01
Chr01	irgsp1_rep	three_prime_UTR	30775650	30775759	.	-	.	Parent=Os01t0737800-01
Chr01	irgsp1_rep	three_prime_UTR	30775140	30775521	.	-	.	Parent=Os01t0737800-01
Chr01	irgsp1_rep	mRNA	30775140	30779238	.	-	.	ID=Os01t0737800-02;Name=Os01t0737800-02;Locus_id=Os01g0737800;Note=Similar to Protein farnesyltransferase beta subunit (EC 2.5.1.58) (CAAX farnesyltransferase beta subunit) (RAS proteins prenyltransferase beta) (FTase-beta).;Transcript_evidence=AK073299 (DDBJ%2C Best hit);ORF_evidence=A7J147 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Prenyltransferase/squalene oxidase (IPR001330),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930);NIAS_FLcDNA=J033029E14;Expression=AK073299;TENOR=Os01t0737800-02;KEGG=Os01t0737800-02 (EC:2.5.1.58)
Chr01	irgsp1_rep	five_prime_UTR	30779230	30779238	.	-	.	Parent=Os01t0737800-02
Chr01	irgsp1_rep	CDS	30778952	30779229	.	-	0	Parent=Os01t0737800-02
Chr01	irgsp1_rep	CDS	30778555	30778641	.	-	1	Parent=Os01t0737800-02
Chr01	irgsp1_rep	CDS	30778353	30778455	.	-	1	Parent=Os01t0737800-02
Chr01	irgsp1_rep	CDS	30777865	30777900	.	-	0	Parent=Os01t0737800-02
Chr01	irgsp1_rep	CDS	30777310	30777392	.	-	0	Parent=Os01t0737800-02
Chr01	irgsp1_rep	CDS	30777177	30777230	.	-	1	Parent=Os01t0737800-02
Chr01	irgsp1_rep	CDS	30777020	30777071	.	-	1	Parent=Os01t0737800-02
Chr01	irgsp1_rep	CDS	30776889	30776953	.	-	0	Parent=Os01t0737800-02
Chr01	irgsp1_rep	CDS	30776749	30776805	.	-	1	Parent=Os01t0737800-02
Chr01	irgsp1_rep	CDS	30776584	30776656	.	-	1	Parent=Os01t0737800-02
Chr01	irgsp1_rep	CDS	30776233	30776319	.	-	0	Parent=Os01t0737800-02
Chr01	irgsp1_rep	CDS	30776043	30776160	.	-	0	Parent=Os01t0737800-02
Chr01	irgsp1_rep	CDS	30775650	30775759	.	-	2	Parent=Os01t0737800-02
Chr01	irgsp1_rep	CDS	30775288	30775521	.	-	0	Parent=Os01t0737800-02
Chr01	irgsp1_rep	three_prime_UTR	30775140	30775287	.	-	.	Parent=Os01t0737800-02
Chr01	irgsp1_rep	mRNA	30779393	30782726	.	+	.	ID=Os01t0737900-01;Name=Os01t0737900-01;Locus_id=Os01g0737900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK072600 (DDBJ%2C Best hit);ORF_evidence=A2WUV3 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J023130A18;Expression=AK072600;TENOR=Os01t0737900-01;KEGG=Os01t0737900-01
Chr01	irgsp1_rep	five_prime_UTR	30779393	30779545	.	+	.	Parent=Os01t0737900-01
Chr01	irgsp1_rep	CDS	30779546	30779646	.	+	0	Parent=Os01t0737900-01
Chr01	irgsp1_rep	CDS	30780128	30782417	.	+	1	Parent=Os01t0737900-01
Chr01	irgsp1_rep	three_prime_UTR	30782418	30782726	.	+	.	Parent=Os01t0737900-01
Chr01	irgsp1_rep	mRNA	30786190	30787966	.	+	.	ID=Os01t0738000-01;Name=Os01t0738000-01;Locus_id=Os01g0738000;Note=Conserved hypothetical protein.;Transcript_evidence=AK062424 (DDBJ%2C Best hit);ORF_evidence=B8A931 (UniProt);NIAS_FLcDNA=001-102-G12;Expression=AK062424;TENOR=Os01t0738000-01;KEGG=Os01t0738000-01
Chr01	irgsp1_rep	five_prime_UTR	30786190	30786198	.	+	.	Parent=Os01t0738000-01
Chr01	irgsp1_rep	CDS	30786199	30786365	.	+	0	Parent=Os01t0738000-01
Chr01	irgsp1_rep	CDS	30786449	30786570	.	+	1	Parent=Os01t0738000-01
Chr01	irgsp1_rep	CDS	30787756	30787775	.	+	2	Parent=Os01t0738000-01
Chr01	irgsp1_rep	three_prime_UTR	30787776	30787966	.	+	.	Parent=Os01t0738000-01
Chr01	irgsp1_rep	mRNA	30788977	30796475	.	-	.	ID=Os01t0738100-00;Name=Os01t0738100-00;Locus_id=Os01g0738100;CGSNL Gene Symbol=OTS3;CGSNL Gene Name=OVERLY TOLERANT TO SALT 3;Oryzabase Gene Symbol Synonym(s)=OsOTS3;Oryzabase Gene Name Synonym(s)=SUMO protease protein%2C Overly Tolerant to Salt3;Note=Peptidase C48%2C SUMO/Sentrin/Ubl1 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9EZL0 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase C48%2C SUMO/Sentrin/Ubl1 (IPR003653);Oryzabase=20944;TENOR=Os01t0738100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	30796128	30796475	.	-	0	Parent=Os01t0738100-00
Chr01	irgsp1_rep	CDS	30794766	30794826	.	-	0	Parent=Os01t0738100-00
Chr01	irgsp1_rep	CDS	30794160	30794245	.	-	2	Parent=Os01t0738100-00
Chr01	irgsp1_rep	CDS	30793765	30794066	.	-	0	Parent=Os01t0738100-00
Chr01	irgsp1_rep	CDS	30792745	30792817	.	-	1	Parent=Os01t0738100-00
Chr01	irgsp1_rep	CDS	30791843	30791913	.	-	0	Parent=Os01t0738100-00
Chr01	irgsp1_rep	CDS	30791703	30791732	.	-	1	Parent=Os01t0738100-00
Chr01	irgsp1_rep	CDS	30791522	30791617	.	-	1	Parent=Os01t0738100-00
Chr01	irgsp1_rep	CDS	30790991	30791078	.	-	1	Parent=Os01t0738100-00
Chr01	irgsp1_rep	CDS	30789240	30789347	.	-	0	Parent=Os01t0738100-00
Chr01	irgsp1_rep	CDS	30788977	30789165	.	-	0	Parent=Os01t0738100-00
Chr01	irgsp1_rep	mRNA	30819009	30823245	.	+	.	ID=Os01t0738300-01;Name=Os01t0738300-01;Locus_id=Os01g0738300;Oryzabase Gene Name Synonym(s)=Extensin family protein;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK101943 (DDBJ%2C Best hit);ORF_evidence=Q1EP18 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J033074K07;Oryzabase=21934;Expression=AK101943;TENOR=Os01t0738300-01;KEGG=Os01t0738300-01
Chr01	irgsp1_rep	five_prime_UTR	30819009	30819461	.	+	.	Parent=Os01t0738300-01
Chr01	irgsp1_rep	CDS	30819462	30820338	.	+	0	Parent=Os01t0738300-01
Chr01	irgsp1_rep	CDS	30820436	30820843	.	+	2	Parent=Os01t0738300-01
Chr01	irgsp1_rep	CDS	30820955	30821041	.	+	2	Parent=Os01t0738300-01
Chr01	irgsp1_rep	CDS	30821125	30821195	.	+	2	Parent=Os01t0738300-01
Chr01	irgsp1_rep	CDS	30821295	30821371	.	+	0	Parent=Os01t0738300-01
Chr01	irgsp1_rep	CDS	30821483	30821630	.	+	1	Parent=Os01t0738300-01
Chr01	irgsp1_rep	CDS	30822620	30822781	.	+	0	Parent=Os01t0738300-01
Chr01	irgsp1_rep	CDS	30822861	30823046	.	+	0	Parent=Os01t0738300-01
Chr01	irgsp1_rep	three_prime_UTR	30823047	30823245	.	+	.	Parent=Os01t0738300-01
Chr01	irgsp1_rep	mRNA	30824689	30825665	.	+	.	ID=Os01t0738400-01;Name=Os01t0738400-01;Locus_id=Os01g0738400;RAP-DB Gene Symbol Synonym(s)=OsC3H10;CGSNL Gene Symbol=C3H10;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 10;Oryzabase Gene Symbol Synonym(s)=OsC3H10%2C OsTZF8%2C OsCCCH-Zn-2%2C OsEnS-12;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 10%2C Tandem zinc finger protein 8%2C endosperm-specific gene 12;Note=CCCH-zinc finger protein%2C Regulation of drought tolerance;Transcript_evidence=AK110661;ORF_evidence=Q94JI5;GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=002-169-F02;Manual Curation=October 8%2C 2020;Literature_PMID=33019599;Oryzabase=8573;Expression=AK110661;TENOR=Os01t0738400-01;KEGG=Os01t0738400-01;Subcellular location=nucleus (GO:0005634),cytoplasm (GO:0005737),cytoplasmic foci (GO:0000932)
Chr01	irgsp1_rep	five_prime_UTR	30824689	30824743	.	+	.	Parent=Os01t0738400-01
Chr01	irgsp1_rep	CDS	30824744	30825421	.	+	0	Parent=Os01t0738400-01
Chr01	irgsp1_rep	three_prime_UTR	30825422	30825665	.	+	.	Parent=Os01t0738400-01
Chr01	irgsp1_rep	mRNA	30828776	30832255	.	+	.	ID=Os01t0738500-01;Name=Os01t0738500-01;Locus_id=Os01g0738500;Note=Phospholipase C%2C phosphatidylinositol-specific%2C Y domain domain containing protein.;Transcript_evidence=AK242658 (DDBJ%2C Best hit);ORF_evidence=A2WUV9 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: signal transduction (GO:0007165),Biological Process: intracellular signal transduction (GO:0035556),Molecular Function: phosphatidylinositol phospholipase C activity (GO:0004435);InterPro=Phospholipase C%2C phosphatidylinositol-specific%2C Y domain (IPR001711),Aminotransferase-like%2C plant mobile domain (IPR019557);NIAS_FLcDNA=J090027I22;TENOR=Os01t0738500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	30828776	30828965	.	+	.	Parent=Os01t0738500-01
Chr01	irgsp1_rep	CDS	30829449	30829718	.	+	0	Parent=Os01t0738500-01
Chr01	irgsp1_rep	CDS	30829821	30831125	.	+	0	Parent=Os01t0738500-01
Chr01	irgsp1_rep	CDS	30831293	30831493	.	+	0	Parent=Os01t0738500-01
Chr01	irgsp1_rep	three_prime_UTR	30831494	30832255	.	+	.	Parent=Os01t0738500-01
Chr01	irgsp1_rep	mRNA	30832796	30836732	.	+	.	ID=Os01t0738600-01;Name=Os01t0738600-01;Locus_id=Os01g0738600;Note=ENTH/VHS domain containing protein.;Transcript_evidence=AK073479 (DDBJ%2C Best hit);ORF_evidence=A2WUW0 (UniProt);InterPro=Epsin domain%2C N-terminal (IPR001026),ENTH/VHS (IPR008942),Epsin-like%2C N-terminal (IPR013809);NIAS_FLcDNA=J033044K11;Expression=AK073479;TENOR=Os01t0738600-01;KEGG=Os01t0738600-01
Chr01	irgsp1_rep	five_prime_UTR	30832796	30833008	.	+	.	Parent=Os01t0738600-01
Chr01	irgsp1_rep	CDS	30833009	30833049	.	+	0	Parent=Os01t0738600-01
Chr01	irgsp1_rep	CDS	30833145	30833196	.	+	1	Parent=Os01t0738600-01
Chr01	irgsp1_rep	CDS	30833322	30833401	.	+	0	Parent=Os01t0738600-01
Chr01	irgsp1_rep	CDS	30833546	30833624	.	+	1	Parent=Os01t0738600-01
Chr01	irgsp1_rep	CDS	30833704	30833787	.	+	0	Parent=Os01t0738600-01
Chr01	irgsp1_rep	CDS	30833873	30834018	.	+	0	Parent=Os01t0738600-01
Chr01	irgsp1_rep	CDS	30834104	30834370	.	+	1	Parent=Os01t0738600-01
Chr01	irgsp1_rep	CDS	30834519	30834649	.	+	1	Parent=Os01t0738600-01
Chr01	irgsp1_rep	CDS	30834811	30835013	.	+	2	Parent=Os01t0738600-01
Chr01	irgsp1_rep	CDS	30835286	30835901	.	+	0	Parent=Os01t0738600-01
Chr01	irgsp1_rep	CDS	30836213	30836400	.	+	2	Parent=Os01t0738600-01
Chr01	irgsp1_rep	three_prime_UTR	30836401	30836732	.	+	.	Parent=Os01t0738600-01
Chr01	irgsp1_rep	mRNA	30832799	30834245	.	+	.	ID=Os01t0738600-02;Name=Os01t0738600-02;Locus_id=Os01g0738600;Note=Similar to B0403H10-OSIGBa0105A11.1 protein.;Transcript_evidence=AK120616 (DDBJ%2C Best hit);ORF_evidence=Q01HU7 (UniProt);InterPro=Epsin domain%2C N-terminal (IPR001026),ENTH/VHS (IPR008942),Epsin-like%2C N-terminal (IPR013809);NIAS_FLcDNA=J013152B11;Expression=AK120616;TENOR=Os01t0738600-02;KEGG=Os01t0738600-02
Chr01	irgsp1_rep	five_prime_UTR	30832799	30833008	.	+	.	Parent=Os01t0738600-02
Chr01	irgsp1_rep	CDS	30833009	30833049	.	+	0	Parent=Os01t0738600-02
Chr01	irgsp1_rep	CDS	30833145	30833196	.	+	1	Parent=Os01t0738600-02
Chr01	irgsp1_rep	CDS	30833322	30833401	.	+	0	Parent=Os01t0738600-02
Chr01	irgsp1_rep	CDS	30833546	30833624	.	+	1	Parent=Os01t0738600-02
Chr01	irgsp1_rep	CDS	30833704	30833787	.	+	0	Parent=Os01t0738600-02
Chr01	irgsp1_rep	CDS	30833873	30834018	.	+	0	Parent=Os01t0738600-02
Chr01	irgsp1_rep	CDS	30834104	30834245	.	+	1	Parent=Os01t0738600-02
Chr01	irgsp1_rep	mRNA	30835595	30837960	.	+	.	ID=Os01t0738600-03;Name=Os01t0738600-03;Locus_id=Os01g0738600;Note=Hypothetical conserved gene.;Transcript_evidence=AK289002 (DDBJ%2C Best hit);ORF_evidence=NP_001044190.1 (RefSeq);NIAS_FLcDNA=J090088L18;TENOR=Os01t0738600-03;KEGG=Os01t0738600-03
Chr01	irgsp1_rep	CDS	30835595	30835963	.	+	0	Parent=Os01t0738600-03
Chr01	irgsp1_rep	three_prime_UTR	30835964	30837960	.	+	.	Parent=Os01t0738600-03
Chr01	irgsp1_rep	mRNA	30840199	30840478	.	-	.	ID=Os01t0738800-01;Name=Os01t0738800-01;Locus_id=Os01g0738800;Oryzabase Gene Symbol Synonym(s)=OsPFK02%2C PFK02%2C PFK2%2C OsPFK2;Oryzabase Gene Name Synonym(s)=phosphofructokinase 2;Note=Conserved hypothetical protein.;Transcript_evidence=AK060632 (DDBJ%2C Best hit);ORF_evidence=Q5JNC6 (UniProt);NIAS_FLcDNA=001-027-A11;Oryzabase=19612;Expression=AK060632;TENOR=Os01t0738800-01;KEGG=Os01t0738800-01
Chr01	irgsp1_rep	CDS	30840374	30840478	.	-	0	Parent=Os01t0738800-01
Chr01	irgsp1_rep	three_prime_UTR	30840199	30840373	.	-	.	Parent=Os01t0738800-01
Chr01	irgsp1_rep	mRNA	30848500	30849925	.	-	.	ID=Os01t0738900-01;Name=Os01t0738900-01;Locus_id=Os01g0738900;Note=Conserved hypothetical protein.;Transcript_evidence=AK119907 (DDBJ%2C Best hit);ORF_evidence=A2WNP8 (UniProt);NIAS_FLcDNA=002-182-F08;TENOR=Os01t0738900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	30849924	30849925	.	-	.	Parent=Os01t0738900-01
Chr01	irgsp1_rep	CDS	30849432	30849923	.	-	0	Parent=Os01t0738900-01
Chr01	irgsp1_rep	three_prime_UTR	30849214	30849431	.	-	.	Parent=Os01t0738900-01
Chr01	irgsp1_rep	three_prime_UTR	30848500	30849133	.	-	.	Parent=Os01t0738900-01
Chr01	irgsp1_rep	mRNA	30850664	30856206	.	-	.	ID=Os01t0739000-01;Name=Os01t0739000-01;Locus_id=Os01g0739000;Oryzabase Gene Name Synonym(s)=General matrix processing protease;Note=Similar to Mitochondrial processing peptidase.;Transcript_evidence=AK069568 (DDBJ%2C Best hit),AK073810 (DDBJ%2C Best hit);ORF_evidence=P29677 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: catalytic activity (GO:0003824),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: metal ion binding (GO:0046872);InterPro=Peptidase M16%2C zinc-binding site (IPR001431),Peptidase M16%2C C-terminal (IPR007863),Peptidase M16%2C core (IPR011237),Metalloenzyme%2C LuxS/M16 peptidase-like%2C metal-binding (IPR011249),Peptidase M16%2C N-terminal (IPR011765);NIAS_FLcDNA=J023023N17,J033067L12;Oryzabase=17621;Expression=AK069568;TENOR=Os01t0739000-01;KEGG=Os01t0739000-01 (EC:3.4.24.64)
Chr01	irgsp1_rep	five_prime_UTR	30856068	30856206	.	-	.	Parent=Os01t0739000-01
Chr01	irgsp1_rep	CDS	30856029	30856067	.	-	0	Parent=Os01t0739000-01
Chr01	irgsp1_rep	CDS	30854947	30855168	.	-	0	Parent=Os01t0739000-01
Chr01	irgsp1_rep	CDS	30854555	30854851	.	-	0	Parent=Os01t0739000-01
Chr01	irgsp1_rep	CDS	30854305	30854472	.	-	0	Parent=Os01t0739000-01
Chr01	irgsp1_rep	CDS	30854054	30854221	.	-	0	Parent=Os01t0739000-01
Chr01	irgsp1_rep	CDS	30853892	30853972	.	-	0	Parent=Os01t0739000-01
Chr01	irgsp1_rep	CDS	30853678	30853744	.	-	0	Parent=Os01t0739000-01
Chr01	irgsp1_rep	CDS	30853486	30853583	.	-	2	Parent=Os01t0739000-01
Chr01	irgsp1_rep	CDS	30852467	30852539	.	-	0	Parent=Os01t0739000-01
Chr01	irgsp1_rep	CDS	30852314	30852384	.	-	2	Parent=Os01t0739000-01
Chr01	irgsp1_rep	CDS	30852177	30852226	.	-	0	Parent=Os01t0739000-01
Chr01	irgsp1_rep	CDS	30851278	30851390	.	-	1	Parent=Os01t0739000-01
Chr01	irgsp1_rep	CDS	30851031	30851083	.	-	2	Parent=Os01t0739000-01
Chr01	irgsp1_rep	three_prime_UTR	30850664	30851030	.	-	.	Parent=Os01t0739000-01
Chr01	irgsp1_rep	mRNA	30868528	30871602	.	+	.	ID=Os01t0739200-01;Name=Os01t0739200-01;Locus_id=Os01g0739200;Oryzabase Gene Symbol Synonym(s)=OsPP14;Oryzabase Gene Name Synonym(s)=Protein phosphatase 14;Note=Protein-tyrosine phosphatase%2C dual specificity domain containing protein.;Transcript_evidence=AK073172 (DDBJ%2C Best hit);ORF_evidence=B6TA53 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Biological Process: dephosphorylation (GO:0016311),Molecular Function: protein tyrosine phosphatase activity (GO:0004725),Molecular Function: protein tyrosine/serine/threonine phosphatase activity (GO:0008138),Molecular Function: phosphatase activity (GO:0016791);InterPro=Dual specificity phosphatase%2C catalytic domain (IPR000340),Protein-tyrosine/Dual-specificity phosphatase (IPR000387),Protein-tyrosine phosphatase%2C active site (IPR016130),Dual specificity phosphatase%2C subgroup%2C catalytic domain (IPR020422);NIAS_FLcDNA=J033022G13;Oryzabase=18628;Expression=AK073172;TENOR=Os01t0739200-01;KEGG=Os01t0739200-01
Chr01	irgsp1_rep	five_prime_UTR	30868528	30868687	.	+	.	Parent=Os01t0739200-01
Chr01	irgsp1_rep	CDS	30868688	30868921	.	+	0	Parent=Os01t0739200-01
Chr01	irgsp1_rep	CDS	30869444	30869566	.	+	0	Parent=Os01t0739200-01
Chr01	irgsp1_rep	CDS	30869846	30869939	.	+	0	Parent=Os01t0739200-01
Chr01	irgsp1_rep	CDS	30870561	30870643	.	+	2	Parent=Os01t0739200-01
Chr01	irgsp1_rep	CDS	30870726	30870815	.	+	0	Parent=Os01t0739200-01
Chr01	irgsp1_rep	CDS	30870918	30871319	.	+	0	Parent=Os01t0739200-01
Chr01	irgsp1_rep	three_prime_UTR	30871320	30871602	.	+	.	Parent=Os01t0739200-01
Chr01	irgsp1_rep	mRNA	30872353	30872898	.	-	.	ID=Os01t0739300-01;Name=Os01t0739300-01;Locus_id=Os01g0739300;Note=Hypothetical gene.;Transcript_evidence=AK062987 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-109-F10;Expression=AK062987;TENOR=Os01t0739300-01;KEGG=Os01t0739300-01
Chr01	irgsp1_rep	five_prime_UTR	30872897	30872898	.	-	.	Parent=Os01t0739300-01
Chr01	irgsp1_rep	CDS	30872678	30872896	.	-	0	Parent=Os01t0739300-01
Chr01	irgsp1_rep	three_prime_UTR	30872353	30872677	.	-	.	Parent=Os01t0739300-01
Chr01	irgsp1_rep	mRNA	30879000	30885267	.	+	.	ID=Os01t0739400-01;Name=Os01t0739400-01;Locus_id=Os01g0739400;Note=Similar to predicted protein.;Transcript_evidence=AK242004 (DDBJ%2C Best hit);ORF_evidence=NP_850072.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: metal ion binding (GO:0046872);InterPro=Cof protein (IPR000150),Uncharacterised protein family UPF0054%2C metalloprotease YbeY%2C predicted (IPR002036),HAD superfamily hydrolase-like%2C type 3 (IPR013200),Metalloprotease catalytic domain%2C predicted (IPR023091),HAD-like domain (IPR023214);NIAS_FLcDNA=J075103N21;TENOR=Os01t0739400-01;KEGG=Os01t0739400-01
Chr01	irgsp1_rep	five_prime_UTR	30879000	30879091	.	+	.	Parent=Os01t0739400-01
Chr01	irgsp1_rep	CDS	30879092	30879478	.	+	0	Parent=Os01t0739400-01
Chr01	irgsp1_rep	CDS	30880130	30880381	.	+	0	Parent=Os01t0739400-01
Chr01	irgsp1_rep	CDS	30880465	30880560	.	+	0	Parent=Os01t0739400-01
Chr01	irgsp1_rep	CDS	30880747	30880915	.	+	0	Parent=Os01t0739400-01
Chr01	irgsp1_rep	CDS	30881030	30881113	.	+	2	Parent=Os01t0739400-01
Chr01	irgsp1_rep	CDS	30881194	30881294	.	+	2	Parent=Os01t0739400-01
Chr01	irgsp1_rep	CDS	30881652	30881744	.	+	0	Parent=Os01t0739400-01
Chr01	irgsp1_rep	CDS	30882760	30882831	.	+	0	Parent=Os01t0739400-01
Chr01	irgsp1_rep	CDS	30883251	30883370	.	+	0	Parent=Os01t0739400-01
Chr01	irgsp1_rep	CDS	30883451	30883501	.	+	0	Parent=Os01t0739400-01
Chr01	irgsp1_rep	CDS	30884363	30884566	.	+	0	Parent=Os01t0739400-01
Chr01	irgsp1_rep	three_prime_UTR	30884567	30885267	.	+	.	Parent=Os01t0739400-01
Chr01	irgsp1_rep	mRNA	30885172	30886338	.	-	.	ID=Os01t0739500-01;Name=Os01t0739500-01;Locus_id=Os01g0739500;CGSNL Gene Symbol=O3L5;CGSNL Gene Name=OXS3-LIKE 5;Oryzabase Gene Symbol Synonym(s)=OsO3L5;Oryzabase Gene Name Synonym(s)=OXIDATIVE STRESS 3-like 5%2C OXS3-like 5;Note=Conserved hypothetical protein.;Transcript_evidence=AK121118 (DDBJ%2C Best hit);ORF_evidence=A2WUW6 (UniProt);NIAS_FLcDNA=J023074B04;Oryzabase=22448;Expression=AK121118;TENOR=Os01t0739500-01;KEGG=Os01t0739500-01
Chr01	irgsp1_rep	five_prime_UTR	30886222	30886338	.	-	.	Parent=Os01t0739500-01
Chr01	irgsp1_rep	CDS	30885992	30886221	.	-	0	Parent=Os01t0739500-01
Chr01	irgsp1_rep	CDS	30885595	30885892	.	-	1	Parent=Os01t0739500-01
Chr01	irgsp1_rep	three_prime_UTR	30885172	30885594	.	-	.	Parent=Os01t0739500-01
Chr01	irgsp1_rep	mRNA	30897747	30901040	.	+	.	ID=Os01t0739700-01;Name=Os01t0739700-01;Locus_id=Os01g0739700;Note=Glycoside hydrolase%2C family 17 protein.;Transcript_evidence=AK063960 (DDBJ%2C Best hit);ORF_evidence=Q1WAK1 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-123-G07;Expression=AK063960;TENOR=Os01t0739700-01;KEGG=Os01t0739700-01
Chr01	irgsp1_rep	five_prime_UTR	30897747	30897972	.	+	.	Parent=Os01t0739700-01
Chr01	irgsp1_rep	CDS	30897973	30898018	.	+	0	Parent=Os01t0739700-01
Chr01	irgsp1_rep	CDS	30898366	30899640	.	+	2	Parent=Os01t0739700-01
Chr01	irgsp1_rep	CDS	30900517	30900547	.	+	2	Parent=Os01t0739700-01
Chr01	irgsp1_rep	CDS	30900654	30900783	.	+	1	Parent=Os01t0739700-01
Chr01	irgsp1_rep	three_prime_UTR	30900784	30901040	.	+	.	Parent=Os01t0739700-01
Chr01	irgsp1_rep	mRNA	30905585	30906259	.	-	.	ID=Os01t0740000-01;Name=Os01t0740000-01;Locus_id=Os01g0740000;Note=Hypothetical protein.;Transcript_evidence=AK111315 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-181-C08;TENOR=Os01t0740000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	30905896	30906259	.	-	.	Parent=Os01t0740000-01
Chr01	irgsp1_rep	CDS	30905608	30905895	.	-	0	Parent=Os01t0740000-01
Chr01	irgsp1_rep	three_prime_UTR	30905585	30905607	.	-	.	Parent=Os01t0740000-01
Chr01	irgsp1_rep	mRNA	30908205	30908948	.	+	.	ID=Os01t0740150-00;Name=Os01t0740150-00;Locus_id=Os01g0740150;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);InterPro=Ribonuclease H1%2C N-terminal (IPR011320);TENOR=Os01t0740150-00
Chr01	irgsp1_rep	CDS	30908205	30908948	.	+	0	Parent=Os01t0740150-00
Chr01	irgsp1_rep	mRNA	30909430	30916476	.	+	.	ID=Os01t0740300-01;Name=Os01t0740300-01;Locus_id=Os01g0740300;Note=Hypothetical protein.;Transcript_evidence=AK121893 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033105C18;Expression=AK121893;TENOR=Os01t0740300-01;KEGG=Os01t0740300-01
Chr01	irgsp1_rep	five_prime_UTR	30909430	30909560	.	+	.	Parent=Os01t0740300-01
Chr01	irgsp1_rep	five_prime_UTR	30910211	30910358	.	+	.	Parent=Os01t0740300-01
Chr01	irgsp1_rep	five_prime_UTR	30914562	30915829	.	+	.	Parent=Os01t0740300-01
Chr01	irgsp1_rep	CDS	30915830	30916147	.	+	0	Parent=Os01t0740300-01
Chr01	irgsp1_rep	three_prime_UTR	30916148	30916476	.	+	.	Parent=Os01t0740300-01
Chr01	irgsp1_rep	mRNA	30918126	30921252	.	-	.	ID=Os01t0740350-00;Name=Os01t0740350-00;Locus_id=Os01g0740350;Note=Hypothetical gene.;Transcript_evidence=EU958044 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0740350-00;KEGG=Os01t0740350-00
Chr01	irgsp1_rep	five_prime_UTR	30921076	30921252	.	-	.	Parent=Os01t0740350-00
Chr01	irgsp1_rep	CDS	30920442	30921075	.	-	0	Parent=Os01t0740350-00
Chr01	irgsp1_rep	CDS	30918344	30918774	.	-	2	Parent=Os01t0740350-00
Chr01	irgsp1_rep	three_prime_UTR	30918126	30918343	.	-	.	Parent=Os01t0740350-00
Chr01	irgsp1_rep	mRNA	30919728	30921193	.	+	.	ID=Os01t0740400-01;Name=Os01t0740400-01;Locus_id=Os01g0740400;Note=Protein of unknown function DUF1005 family protein.;Transcript_evidence=AK110766 (DDBJ%2C Best hit);ORF_evidence=A2WUW9 (UniProt);InterPro=Protein of unknown function DUF1005 (IPR010410);NIAS_FLcDNA=002-171-A06;Expression=AK110766;TENOR=Os01t0740400-01;KEGG=Os01t0740400-01
Chr01	irgsp1_rep	five_prime_UTR	30919728	30920181	.	+	.	Parent=Os01t0740400-01
Chr01	irgsp1_rep	CDS	30920182	30921090	.	+	0	Parent=Os01t0740400-01
Chr01	irgsp1_rep	three_prime_UTR	30921091	30921193	.	+	.	Parent=Os01t0740400-01
Chr01	irgsp1_rep	mRNA	30923013	30927457	.	-	.	ID=Os01t0740500-00;Name=Os01t0740500-00;Locus_id=Os01g0740500;Note=Similar to glutamate carboxypeptidase 2.;Transcript_evidence=AK371737 (DDBJ);ORF_evidence=NP_001147292.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: peptidase activity (GO:0008233);InterPro=Protease-associated domain%2C PA (IPR003137),Transferrin receptor-like%2C dimerisation domain (IPR007365),Peptidase M28 (IPR007484);TENOR=Os01t0740500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	30927427	30927457	.	-	.	Parent=Os01t0740500-00
Chr01	irgsp1_rep	CDS	30926404	30927426	.	-	0	Parent=Os01t0740500-00
Chr01	irgsp1_rep	CDS	30926209	30926276	.	-	0	Parent=Os01t0740500-00
Chr01	irgsp1_rep	CDS	30925282	30925363	.	-	1	Parent=Os01t0740500-00
Chr01	irgsp1_rep	CDS	30925034	30925126	.	-	0	Parent=Os01t0740500-00
Chr01	irgsp1_rep	CDS	30924768	30924920	.	-	0	Parent=Os01t0740500-00
Chr01	irgsp1_rep	CDS	30924473	30924541	.	-	0	Parent=Os01t0740500-00
Chr01	irgsp1_rep	CDS	30924230	30924323	.	-	0	Parent=Os01t0740500-00
Chr01	irgsp1_rep	CDS	30924043	30924126	.	-	2	Parent=Os01t0740500-00
Chr01	irgsp1_rep	CDS	30923881	30923969	.	-	2	Parent=Os01t0740500-00
Chr01	irgsp1_rep	CDS	30923658	30923774	.	-	0	Parent=Os01t0740500-00
Chr01	irgsp1_rep	CDS	30923431	30923571	.	-	0	Parent=Os01t0740500-00
Chr01	irgsp1_rep	CDS	30923138	30923320	.	-	0	Parent=Os01t0740500-00
Chr01	irgsp1_rep	three_prime_UTR	30923013	30923137	.	-	.	Parent=Os01t0740500-00
Chr01	irgsp1_rep	mRNA	30933396	30933963	.	-	.	ID=Os01t0740600-01;Name=Os01t0740600-01;Locus_id=Os01g0740600;Note=Transferrin receptor-like%2C dimerisation domain containing protein.;Transcript_evidence=AK062281 (DDBJ%2C Best hit);ORF_evidence=GeneMark;InterPro=Transferrin receptor-like%2C dimerisation domain (IPR007365);NIAS_FLcDNA=001-100-C05;Expression=AK062281;TENOR=Os01t0740600-01;KEGG=Os01t0740600-01 (EC:3.4.17.21)
Chr01	irgsp1_rep	CDS	30933883	30933963	.	-	0	Parent=Os01t0740600-01
Chr01	irgsp1_rep	CDS	30933600	30933782	.	-	0	Parent=Os01t0740600-01
Chr01	irgsp1_rep	three_prime_UTR	30933396	30933599	.	-	.	Parent=Os01t0740600-01
Chr01	irgsp1_rep	mRNA	30933009	30936727	.	-	.	ID=Os01t0740650-00;Name=Os01t0740650-00;Locus_id=Os01g0740650;Note=Similar to glutamate carboxypeptidase 2.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001147292.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: peptidase activity (GO:0008233);InterPro=Peptidase M28 (IPR007484);TENOR=Os01t0740650-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	30936317	30936727	.	-	0	Parent=Os01t0740650-00
Chr01	irgsp1_rep	CDS	30936168	30936235	.	-	0	Parent=Os01t0740650-00
Chr01	irgsp1_rep	CDS	30935837	30935918	.	-	1	Parent=Os01t0740650-00
Chr01	irgsp1_rep	CDS	30935520	30935612	.	-	0	Parent=Os01t0740650-00
Chr01	irgsp1_rep	CDS	30935286	30935441	.	-	0	Parent=Os01t0740650-00
Chr01	irgsp1_rep	CDS	30935022	30935084	.	-	0	Parent=Os01t0740650-00
Chr01	irgsp1_rep	CDS	30934826	30934913	.	-	0	Parent=Os01t0740650-00
Chr01	irgsp1_rep	CDS	30934438	30934526	.	-	2	Parent=Os01t0740650-00
Chr01	irgsp1_rep	CDS	30934115	30934231	.	-	0	Parent=Os01t0740650-00
Chr01	irgsp1_rep	CDS	30933009	30933200	.	-	0	Parent=Os01t0740650-00
Chr01	irgsp1_rep	mRNA	30933645	30935642	.	+	.	ID=Os01t0740651-00;Name=Os01t0740651-00;Locus_id=Os01g0740651;Note=Hypothetical protein.;Transcript_evidence=tplb0027e03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0740651-00
Chr01	irgsp1_rep	five_prime_UTR	30933645	30933739	.	+	.	Parent=Os01t0740651-00
Chr01	irgsp1_rep	CDS	30933740	30934043	.	+	0	Parent=Os01t0740651-00
Chr01	irgsp1_rep	CDS	30934253	30934311	.	+	2	Parent=Os01t0740651-00
Chr01	irgsp1_rep	three_prime_UTR	30934312	30934978	.	+	.	Parent=Os01t0740651-00
Chr01	irgsp1_rep	three_prime_UTR	30935034	30935127	.	+	.	Parent=Os01t0740651-00
Chr01	irgsp1_rep	three_prime_UTR	30935211	30935642	.	+	.	Parent=Os01t0740651-00
Chr01	irgsp1_rep	mRNA	30939288	30941548	.	-	.	ID=Os01t0740700-01;Name=Os01t0740700-01;Locus_id=Os01g0740700;Note=Hypothetical protein.;Transcript_evidence=AK109635 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-138-D08;TENOR=Os01t0740700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	30940616	30941548	.	-	.	Parent=Os01t0740700-01
Chr01	irgsp1_rep	CDS	30939887	30940615	.	-	0	Parent=Os01t0740700-01
Chr01	irgsp1_rep	three_prime_UTR	30939288	30939886	.	-	.	Parent=Os01t0740700-01
Chr01	irgsp1_rep	mRNA	30939691	30940993	.	+	.	ID=Os01t0740800-01;Name=Os01t0740800-01;Locus_id=Os01g0740800;Note=Conserved hypothetical protein.;Transcript_evidence=AK070494 (DDBJ%2C Best hit);ORF_evidence=B8A9D3 (UniProt);NIAS_FLcDNA=J023048M13;TENOR=Os01t0740800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	30939691	30940023	.	+	.	Parent=Os01t0740800-01
Chr01	irgsp1_rep	CDS	30940024	30940398	.	+	0	Parent=Os01t0740800-01
Chr01	irgsp1_rep	three_prime_UTR	30940399	30940993	.	+	.	Parent=Os01t0740800-01
Chr01	irgsp1_rep	mRNA	30949379	30952405	.	-	.	ID=Os01t0741200-01;Name=Os01t0741200-01;Locus_id=Os01g0741200;Oryzabase Gene Symbol Synonym(s)=OsLysM-RLK4;Oryzabase Gene Name Synonym(s)=LysM receptor-like kinase 4;Note=Similar to LysM type receptor kinase (Fragment).;Transcript_evidence=AK073720 (DDBJ%2C Best hit);ORF_evidence=D3P8G9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033063N13;Oryzabase=10923;TENOR=Os01t0741200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	30952138	30952405	.	-	0	Parent=Os01t0741200-01
Chr01	irgsp1_rep	CDS	30951410	30951555	.	-	2	Parent=Os01t0741200-01
Chr01	irgsp1_rep	CDS	30951241	30951330	.	-	0	Parent=Os01t0741200-01
Chr01	irgsp1_rep	CDS	30951040	30951145	.	-	0	Parent=Os01t0741200-01
Chr01	irgsp1_rep	CDS	30950611	30950762	.	-	2	Parent=Os01t0741200-01
Chr01	irgsp1_rep	CDS	30950425	30950522	.	-	0	Parent=Os01t0741200-01
Chr01	irgsp1_rep	CDS	30950190	30950340	.	-	1	Parent=Os01t0741200-01
Chr01	irgsp1_rep	CDS	30949901	30950008	.	-	0	Parent=Os01t0741200-01
Chr01	irgsp1_rep	CDS	30949632	30949796	.	-	0	Parent=Os01t0741200-01
Chr01	irgsp1_rep	three_prime_UTR	30949379	30949631	.	-	.	Parent=Os01t0741200-01
Chr01	irgsp1_rep	mRNA	30954494	30954751	.	+	.	ID=Os01t0741250-00;Name=Os01t0741250-00;Locus_id=Os01g0741250;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os01t0741250-00
Chr01	irgsp1_rep	CDS	30954494	30954751	.	+	0	Parent=Os01t0741250-00
Chr01	irgsp1_rep	mRNA	30955595	30955930	.	+	.	ID=Os01t0741300-00;Name=Os01t0741300-00;Locus_id=Os01g0741300;Note=Similar to inorganic phosphate transporter 1-7.;Transcript_evidence=AY187026 (DDBJ);ORF_evidence=NP_001151202.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transmembrane transporter activity (GO:0022857);InterPro=General substrate transporter (IPR005828),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);TENOR=Os01t0741300-00;KEGG=Os01t0741300-00
Chr01	irgsp1_rep	CDS	30955595	30955930	.	+	0	Parent=Os01t0741300-00
Chr01	irgsp1_rep	mRNA	30975765	30979337	.	+	.	ID=Os01t0741900-01;Name=Os01t0741900-01;Locus_id=Os01g0741900;RAP-DB Gene Symbol Synonym(s)=IAA6%2C OsIAA6;RAP-DB Gene Name Synonym(s)=Aux/IAA protein 6;CGSNL Gene Symbol=IAA6;Oryzabase Gene Symbol Synonym(s)=OsIAA6;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 6;Note=Auxin-responsive protein%2C Drought tolerance%2C Control of tiller outgrowth;Transcript_evidence=AK068600;ORF_evidence=Q8LQ74;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: protein binding (GO:0005515),Cellular Component: nucleus (GO:0005634);InterPro=AUX/IAA protein (IPR003311),PB1 domain (IPR000270);NIAS_FLcDNA=J013154A18;Manual Curation=June 4%2C 2015;Literature_PMID=26025543;Oryzabase=10897;Expression=AK068600;TENOR=Os01t0741900-01;KEGG=Os01t0741900-01
Chr01	irgsp1_rep	five_prime_UTR	30975765	30976620	.	+	.	Parent=Os01t0741900-01
Chr01	irgsp1_rep	CDS	30976621	30976960	.	+	0	Parent=Os01t0741900-01
Chr01	irgsp1_rep	CDS	30977088	30977256	.	+	2	Parent=Os01t0741900-01
Chr01	irgsp1_rep	CDS	30978115	30978377	.	+	1	Parent=Os01t0741900-01
Chr01	irgsp1_rep	CDS	30978459	30978606	.	+	2	Parent=Os01t0741900-01
Chr01	irgsp1_rep	CDS	30978761	30978824	.	+	1	Parent=Os01t0741900-01
Chr01	irgsp1_rep	CDS	30978967	30978990	.	+	0	Parent=Os01t0741900-01
Chr01	irgsp1_rep	three_prime_UTR	30978991	30979337	.	+	.	Parent=Os01t0741900-01
Chr01	irgsp1_rep	mRNA	30984522	30985146	.	-	.	ID=Os01t0742000-01;Name=Os01t0742000-01;Locus_id=Os01g0742000;Note=tRNA/rRNA methyltransferase%2C SpoU domain containing protein.;Transcript_evidence=AK062779 (DDBJ%2C Best hit);ORF_evidence=NP_849992.1 (RefSeq);GO=Biological Process: RNA processing (GO:0006396),Molecular Function: RNA binding (GO:0003723),Molecular Function: RNA methyltransferase activity (GO:0008173);InterPro=tRNA/rRNA methyltransferase%2C SpoU (IPR001537);NIAS_FLcDNA=001-107-B01;Expression=AK062779;TENOR=Os01t0742000-01;KEGG=Os01t0742000-01
Chr01	irgsp1_rep	five_prime_UTR	30985145	30985146	.	-	.	Parent=Os01t0742000-01
Chr01	irgsp1_rep	CDS	30984653	30985144	.	-	0	Parent=Os01t0742000-01
Chr01	irgsp1_rep	three_prime_UTR	30984522	30984652	.	-	.	Parent=Os01t0742000-01
Chr01	irgsp1_rep	mRNA	30985374	30986791	.	+	.	ID=Os01t0742100-01;Name=Os01t0742100-01;Locus_id=Os01g0742100;Note=Hypothetical protein.;Transcript_evidence=AK110930 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-173-F01;Expression=AK110930;TENOR=Os01t0742100-01;KEGG=Os01t0742100-01
Chr01	irgsp1_rep	five_prime_UTR	30985374	30986135	.	+	.	Parent=Os01t0742100-01
Chr01	irgsp1_rep	CDS	30986136	30986519	.	+	0	Parent=Os01t0742100-01
Chr01	irgsp1_rep	three_prime_UTR	30986520	30986791	.	+	.	Parent=Os01t0742100-01
Chr01	irgsp1_rep	mRNA	30989841	30989893	.	+	.	ID=Os01t0742150-00;Name=Os01t0742150-00;Locus_id=Os01g0742150;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0742150-00
Chr01	irgsp1_rep	exon	30989841	30989893	.	+	.	Parent=Os01t0742150-00
Chr01	irgsp1_rep	mRNA	30992411	30997180	.	+	.	ID=Os01t0742200-01;Name=Os01t0742200-01;Locus_id=Os01g0742200;Note=Similar to Elongation factor EF-2 (Fragment).;Transcript_evidence=AK063421 (DDBJ%2C Best hit);ORF_evidence=Q01MK8 (UniProt);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Translation elongation factor EFG/EF2%2C C-terminal (IPR000640),Protein synthesis factor%2C GTP-binding (IPR000795),Translation elongation factor EFTu/EF1A%2C domain 2 (IPR004161),Small GTP-binding protein domain (IPR005225),Translation elongation factor EFG/EF2%2C domain IV (IPR005517),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Elongation factor G/III/V (IPR009022),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=001-115-C05;Expression=AK063421;TENOR=Os01t0742200-01;KEGG=Os01t0742200-01 (EC:3.6.5.3)
Chr01	irgsp1_rep	five_prime_UTR	30992411	30992526	.	+	.	Parent=Os01t0742200-01
Chr01	irgsp1_rep	five_prime_UTR	30993894	30993928	.	+	.	Parent=Os01t0742200-01
Chr01	irgsp1_rep	CDS	30993929	30994019	.	+	0	Parent=Os01t0742200-01
Chr01	irgsp1_rep	CDS	30994567	30996956	.	+	2	Parent=Os01t0742200-01
Chr01	irgsp1_rep	three_prime_UTR	30996957	30997180	.	+	.	Parent=Os01t0742200-01
Chr01	irgsp1_rep	mRNA	30993892	30997017	.	-	.	ID=Os01t0742250-00;Name=Os01t0742250-00;Locus_id=Os01g0742250;Note=Hypothetical protein.;Transcript_evidence=tplb0056i14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0742250-00
Chr01	irgsp1_rep	five_prime_UTR	30995124	30997017	.	-	.	Parent=Os01t0742250-00
Chr01	irgsp1_rep	CDS	30994788	30995123	.	-	0	Parent=Os01t0742250-00
Chr01	irgsp1_rep	three_prime_UTR	30994583	30994787	.	-	.	Parent=Os01t0742250-00
Chr01	irgsp1_rep	three_prime_UTR	30993892	30994037	.	-	.	Parent=Os01t0742250-00
Chr01	irgsp1_rep	mRNA	30997998	30999138	.	-	.	ID=Os01t0742300-01;Name=Os01t0742300-01;Locus_id=Os01g0742300;Note=3-hydroxyacid dehydrogenase/reductase domain containing protein.;Transcript_evidence=AK065837 (DDBJ%2C Best hit),AK071100 (DDBJ%2C Best hit);ORF_evidence=XP_002869451.1 (RefSeq);GO=Biological Process: pentose-phosphate shunt (GO:0006098),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity (GO:0004616),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: coenzyme binding (GO:0050662);InterPro=6-phosphogluconate dehydrogenase%2C NADP-binding (IPR006115),6-phosphogluconate dehydrogenase%2C C-terminal-like (IPR008927),Dehydrogenase%2C multihelical (IPR013328),3-hydroxyacid dehydrogenase/reductase (IPR015815),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013039B02,J023080N03;Expression=AK065837;TENOR=Os01t0742300-01;KEGG=Os01t0742300-01 (EC:1.1.1.31)
Chr01	irgsp1_rep	five_prime_UTR	30999083	30999138	.	-	.	Parent=Os01t0742300-01
Chr01	irgsp1_rep	CDS	30998132	30999082	.	-	0	Parent=Os01t0742300-01
Chr01	irgsp1_rep	three_prime_UTR	30997998	30998131	.	-	.	Parent=Os01t0742300-01
Chr01	irgsp1_rep	mRNA	30998119	30999454	.	+	.	ID=Os01t0742350-01;Name=Os01t0742350-01;Locus_id=Os01g0742350;Note=Conserved hypothetical protein.;Transcript_evidence=AK241600 (DDBJ%2C Best hit);ORF_evidence=NP_001172563.1 (RefSeq);NIAS_FLcDNA=J065183H21;TENOR=Os01t0742350-01;KEGG=Os01t0742350-01
Chr01	irgsp1_rep	five_prime_UTR	30998119	30998345	.	+	.	Parent=Os01t0742350-01
Chr01	irgsp1_rep	CDS	30998346	30998942	.	+	0	Parent=Os01t0742350-01
Chr01	irgsp1_rep	three_prime_UTR	30998943	30999454	.	+	.	Parent=Os01t0742350-01
Chr01	irgsp1_rep	mRNA	31006026	31008910	.	+	.	ID=Os01t0742400-01;Name=Os01t0742400-01;Locus_id=Os01g0742400;Note=Hypothetical conserved gene.;Transcript_evidence=AK119360 (DDBJ%2C Best hit),AK109885 (DDBJ%2C Best hit);ORF_evidence=Q5JKV6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-131-G06,002-149-D10;Expression=AK119360;TENOR=Os01t0742400-01;KEGG=Os01t0742400-01
Chr01	irgsp1_rep	five_prime_UTR	31006026	31006097	.	+	.	Parent=Os01t0742400-01
Chr01	irgsp1_rep	CDS	31006098	31008908	.	+	0	Parent=Os01t0742400-01
Chr01	irgsp1_rep	three_prime_UTR	31008909	31008910	.	+	.	Parent=Os01t0742400-01
Chr01	irgsp1_rep	mRNA	31006029	31009770	.	+	.	ID=Os01t0742400-02;Name=Os01t0742400-02;Locus_id=Os01g0742400;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK120741 (DDBJ%2C Best hit);ORF_evidence=Q5JKV6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J023003P18;Expression=AK120741;TENOR=Os01t0742400-02;KEGG=Os01t0742400-02
Chr01	irgsp1_rep	five_prime_UTR	31006029	31006097	.	+	.	Parent=Os01t0742400-02
Chr01	irgsp1_rep	CDS	31006098	31008831	.	+	0	Parent=Os01t0742400-02
Chr01	irgsp1_rep	CDS	31008962	31009428	.	+	2	Parent=Os01t0742400-02
Chr01	irgsp1_rep	three_prime_UTR	31009429	31009770	.	+	.	Parent=Os01t0742400-02
Chr01	irgsp1_rep	mRNA	31009626	31013954	.	-	.	ID=Os01t0742500-01;Name=Os01t0742500-01;Locus_id=Os01g0742500;RAP-DB Gene Symbol Synonym(s)=OsHXK6;RAP-DB Gene Name Synonym(s)=Hexokinase 6;CGSNL Gene Symbol=HXK6;CGSNL Gene Name=HEXOKINASE-6;Oryzabase Gene Symbol Synonym(s)=OsHXK6;Oryzabase Gene Name Synonym(s)=Hexokinase 6;Note=Hexokinase 6%2C Glucose sensor%2C Regulation of mitochondrial RNA metabolism;Transcript_evidence=AK065656;ORF_evidence=Q8LQ68;GO=Biological Process: cellular glucose homeostasis (GO:0001678),Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: glycolytic process (GO:0006096),Molecular Function: hexokinase activity (GO:0004396),Molecular Function: ATP binding (GO:0005524),Molecular Function: glucose binding (GO:0005536),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Hexokinase (IPR001312),Hexokinase%2C N-terminal (IPR022672),Hexokinase%2C C-terminal (IPR022673),Hexokinase%2C binding site (IPR019807);NIAS_FLcDNA=J013039E17;Manual Curation=November 7%2C 2019;Literature_PMID=26578814,19010999;Oryzabase=9007;Expression=AK065656;TENOR=Os01t0742500-01;KEGG=Os01t0742500-01 (EC:2.7.1.1);Subcellular location=mitochondrion (GO:0005739)
Chr01	irgsp1_rep	five_prime_UTR	31013770	31013954	.	-	.	Parent=Os01t0742500-01
Chr01	irgsp1_rep	CDS	31013474	31013769	.	-	0	Parent=Os01t0742500-01
Chr01	irgsp1_rep	CDS	31012575	31012725	.	-	1	Parent=Os01t0742500-01
Chr01	irgsp1_rep	CDS	31012296	31012478	.	-	0	Parent=Os01t0742500-01
Chr01	irgsp1_rep	CDS	31011619	31011693	.	-	0	Parent=Os01t0742500-01
Chr01	irgsp1_rep	CDS	31011253	31011408	.	-	0	Parent=Os01t0742500-01
Chr01	irgsp1_rep	CDS	31011014	31011112	.	-	0	Parent=Os01t0742500-01
Chr01	irgsp1_rep	CDS	31010810	31010940	.	-	0	Parent=Os01t0742500-01
Chr01	irgsp1_rep	CDS	31010515	31010596	.	-	1	Parent=Os01t0742500-01
Chr01	irgsp1_rep	CDS	31010075	31010422	.	-	0	Parent=Os01t0742500-01
Chr01	irgsp1_rep	three_prime_UTR	31009626	31010074	.	-	.	Parent=Os01t0742500-01
Chr01	irgsp1_rep	mRNA	31015876	31017514	.	-	.	ID=Os01t0742766-01;Name=Os01t0742766-01;Locus_id=Os01g0742766;Note=Hypothetical conserved gene.;Transcript_evidence=AK241107 (DDBJ%2C Best hit);ORF_evidence=B9EZL9 (UniProt);NIAS_FLcDNA=J065079K11;TENOR=Os01t0742766-01;KEGG=Os01t0742766-01
Chr01	irgsp1_rep	five_prime_UTR	31017511	31017514	.	-	.	Parent=Os01t0742766-01
Chr01	irgsp1_rep	CDS	31017425	31017510	.	-	0	Parent=Os01t0742766-01
Chr01	irgsp1_rep	CDS	31016188	31016254	.	-	1	Parent=Os01t0742766-01
Chr01	irgsp1_rep	CDS	31015908	31016093	.	-	0	Parent=Os01t0742766-01
Chr01	irgsp1_rep	three_prime_UTR	31015876	31015907	.	-	.	Parent=Os01t0742766-01
Chr01	irgsp1_rep	mRNA	31047493	31049443	.	+	.	ID=Os01t0743100-00;Name=Os01t0743100-00;Locus_id=Os01g0743100;Note=IQ motif%2C EF-hand binding site domain containing protein.;Transcript_evidence=EU957675 (DDBJ);ORF_evidence=NP_001044215.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);TENOR=Os01t0743100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	31047493	31047509	.	+	.	Parent=Os01t0743100-00
Chr01	irgsp1_rep	CDS	31047510	31047821	.	+	0	Parent=Os01t0743100-00
Chr01	irgsp1_rep	CDS	31048458	31049429	.	+	0	Parent=Os01t0743100-00
Chr01	irgsp1_rep	three_prime_UTR	31049430	31049443	.	+	.	Parent=Os01t0743100-00
Chr01	irgsp1_rep	mRNA	31048451	31049376	.	-	.	ID=Os01t0743150-00;Name=Os01t0743150-00;Locus_id=Os01g0743150;Note=Hypothetical protein.;Transcript_evidence=AK361221 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0743150-00
Chr01	irgsp1_rep	five_prime_UTR	31048671	31049376	.	-	.	Parent=Os01t0743150-00
Chr01	irgsp1_rep	CDS	31048451	31048670	.	-	0	Parent=Os01t0743150-00
Chr01	irgsp1_rep	mRNA	31055619	31058475	.	-	.	ID=Os01t0743200-01;Name=Os01t0743200-01;Locus_id=Os01g0743200;CGSNL Gene Symbol=PME5;CGSNL Gene Name=PECTIN METHYLESTERASE 5;Oryzabase Gene Symbol Synonym(s)=OsPME5;Oryzabase Gene Name Synonym(s)=pectin methylesterase 5;Note=Pectin lyase fold/virulence factor domain containing protein.;Transcript_evidence=AK105996 (DDBJ%2C Best hit),AK073604 (DDBJ%2C Best hit);ORF_evidence=A2WUY3 (UniProt);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),Pectinesterase%2C active site (IPR018040);NIAS_FLcDNA=001-205-H06,J033049L01;Oryzabase=13169;Expression=AK105996;TENOR=Os01t0743200-01;KEGG=Os01t0743200-01 (EC:3.1.1.11)
Chr01	irgsp1_rep	five_prime_UTR	31058395	31058475	.	-	.	Parent=Os01t0743200-01
Chr01	irgsp1_rep	CDS	31058024	31058394	.	-	0	Parent=Os01t0743200-01
Chr01	irgsp1_rep	CDS	31057747	31057939	.	-	1	Parent=Os01t0743200-01
Chr01	irgsp1_rep	CDS	31057462	31057668	.	-	0	Parent=Os01t0743200-01
Chr01	irgsp1_rep	CDS	31056372	31056607	.	-	0	Parent=Os01t0743200-01
Chr01	irgsp1_rep	CDS	31055729	31055876	.	-	1	Parent=Os01t0743200-01
Chr01	irgsp1_rep	three_prime_UTR	31055619	31055728	.	-	.	Parent=Os01t0743200-01
Chr01	irgsp1_rep	mRNA	31056061	31058475	.	-	.	ID=Os01t0743200-02;Name=Os01t0743200-02;Locus_id=Os01g0743200;CGSNL Gene Symbol=PME5;CGSNL Gene Name=PECTIN METHYLESTERASE 5;Oryzabase Gene Symbol Synonym(s)=OsPME5;Oryzabase Gene Name Synonym(s)=pectin methylesterase 5;Note=Similar to Pectinesterase.;Transcript_evidence=AK109798 (DDBJ%2C Best hit);ORF_evidence=A2WUY3 (UniProt);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),Pectinesterase%2C active site (IPR018040);NIAS_FLcDNA=002-147-E11;Oryzabase=13169;Expression=AK109798;TENOR=Os01t0743200-02;KEGG=Os01t0743200-02 (EC:3.1.1.11)
Chr01	irgsp1_rep	five_prime_UTR	31058395	31058475	.	-	.	Parent=Os01t0743200-02
Chr01	irgsp1_rep	CDS	31058024	31058394	.	-	0	Parent=Os01t0743200-02
Chr01	irgsp1_rep	CDS	31057747	31057939	.	-	1	Parent=Os01t0743200-02
Chr01	irgsp1_rep	CDS	31057462	31057668	.	-	0	Parent=Os01t0743200-02
Chr01	irgsp1_rep	CDS	31056368	31056607	.	-	0	Parent=Os01t0743200-02
Chr01	irgsp1_rep	three_prime_UTR	31056061	31056367	.	-	.	Parent=Os01t0743200-02
Chr01	irgsp1_rep	mRNA	31065153	31069986	.	+	.	ID=Os01t0743300-01;Name=Os01t0743300-01;Locus_id=Os01g0743300;Note=Protease-associated PA domain containing protein.;Transcript_evidence=AK069026 (DDBJ%2C Best hit);ORF_evidence=B6SWE3 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: peptidase activity (GO:0008233);InterPro=Protease-associated domain%2C PA (IPR003137),Transferrin receptor-like%2C dimerisation domain (IPR007365),Peptidase M28 (IPR007484);NIAS_FLcDNA=J023003O13;Expression=AK069026;TENOR=Os01t0743300-01;KEGG=Os01t0743300-01 (EC:3.4.17.21)
Chr01	irgsp1_rep	five_prime_UTR	31065153	31065238	.	+	.	Parent=Os01t0743300-01
Chr01	irgsp1_rep	CDS	31065239	31066252	.	+	0	Parent=Os01t0743300-01
Chr01	irgsp1_rep	CDS	31066351	31066418	.	+	0	Parent=Os01t0743300-01
Chr01	irgsp1_rep	CDS	31066931	31067012	.	+	1	Parent=Os01t0743300-01
Chr01	irgsp1_rep	CDS	31067081	31067173	.	+	0	Parent=Os01t0743300-01
Chr01	irgsp1_rep	CDS	31067258	31067410	.	+	0	Parent=Os01t0743300-01
Chr01	irgsp1_rep	CDS	31067642	31067710	.	+	0	Parent=Os01t0743300-01
Chr01	irgsp1_rep	CDS	31067833	31067926	.	+	0	Parent=Os01t0743300-01
Chr01	irgsp1_rep	CDS	31068336	31068419	.	+	2	Parent=Os01t0743300-01
Chr01	irgsp1_rep	CDS	31068875	31068963	.	+	2	Parent=Os01t0743300-01
Chr01	irgsp1_rep	CDS	31069082	31069198	.	+	0	Parent=Os01t0743300-01
Chr01	irgsp1_rep	CDS	31069309	31069449	.	+	0	Parent=Os01t0743300-01
Chr01	irgsp1_rep	CDS	31069565	31069747	.	+	0	Parent=Os01t0743300-01
Chr01	irgsp1_rep	three_prime_UTR	31069748	31069986	.	+	.	Parent=Os01t0743300-01
Chr01	irgsp1_rep	mRNA	31070183	31076275	.	-	.	ID=Os01t0743400-01;Name=Os01t0743400-01;Locus_id=Os01g0743400;Note=Similar to Tryptophanyl-tRNA synthetase (Fragment).;Transcript_evidence=AK059177 (DDBJ%2C Best hit);ORF_evidence=NP_850070.1 (RefSeq);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: tryptophanyl-tRNA aminoacylation (GO:0006436),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: tryptophan-tRNA ligase activity (GO:0004830),Molecular Function: ATP binding (GO:0005524);InterPro=Aminoacyl-tRNA synthetase%2C class I%2C conserved site (IPR001412),Aminoacyl-tRNA synthetase%2C class Ic (IPR002305),Tryptophanyl-tRNA synthetase (IPR002306),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=001-023-F08;Expression=AK059177;TENOR=Os01t0743400-01;KEGG=Os01t0743400-01 (EC:6.1.1.2)
Chr01	irgsp1_rep	five_prime_UTR	31076177	31076275	.	-	.	Parent=Os01t0743400-01
Chr01	irgsp1_rep	CDS	31076124	31076176	.	-	0	Parent=Os01t0743400-01
Chr01	irgsp1_rep	CDS	31075909	31076028	.	-	1	Parent=Os01t0743400-01
Chr01	irgsp1_rep	CDS	31074533	31074620	.	-	1	Parent=Os01t0743400-01
Chr01	irgsp1_rep	CDS	31074246	31074287	.	-	0	Parent=Os01t0743400-01
Chr01	irgsp1_rep	CDS	31073794	31073883	.	-	0	Parent=Os01t0743400-01
Chr01	irgsp1_rep	CDS	31073581	31073685	.	-	0	Parent=Os01t0743400-01
Chr01	irgsp1_rep	CDS	31072645	31072716	.	-	0	Parent=Os01t0743400-01
Chr01	irgsp1_rep	CDS	31072383	31072495	.	-	0	Parent=Os01t0743400-01
Chr01	irgsp1_rep	CDS	31072279	31072300	.	-	1	Parent=Os01t0743400-01
Chr01	irgsp1_rep	CDS	31072110	31072175	.	-	0	Parent=Os01t0743400-01
Chr01	irgsp1_rep	CDS	31071816	31071872	.	-	0	Parent=Os01t0743400-01
Chr01	irgsp1_rep	CDS	31071190	31071236	.	-	0	Parent=Os01t0743400-01
Chr01	irgsp1_rep	CDS	31071017	31071098	.	-	1	Parent=Os01t0743400-01
Chr01	irgsp1_rep	CDS	31070743	31070832	.	-	0	Parent=Os01t0743400-01
Chr01	irgsp1_rep	CDS	31070464	31070598	.	-	0	Parent=Os01t0743400-01
Chr01	irgsp1_rep	three_prime_UTR	31070183	31070463	.	-	.	Parent=Os01t0743400-01
Chr01	irgsp1_rep	mRNA	31070191	31076274	.	-	.	ID=Os01t0743400-02;Name=Os01t0743400-02;Locus_id=Os01g0743400;Note=Similar to predicted protein.;Transcript_evidence=AK069114 (DDBJ%2C Best hit);ORF_evidence=NP_850070.1 (RefSeq);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: tryptophanyl-tRNA aminoacylation (GO:0006436),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: tryptophan-tRNA ligase activity (GO:0004830),Molecular Function: ATP binding (GO:0005524);InterPro=Aminoacyl-tRNA synthetase%2C class I%2C conserved site (IPR001412),Aminoacyl-tRNA synthetase%2C class Ic (IPR002305),Tryptophanyl-tRNA synthetase (IPR002306),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J023007H03;Expression=AK069114;TENOR=Os01t0743400-02;KEGG=Os01t0743400-02 (EC:6.1.1.2)
Chr01	irgsp1_rep	five_prime_UTR	31076177	31076274	.	-	.	Parent=Os01t0743400-02
Chr01	irgsp1_rep	CDS	31076124	31076176	.	-	0	Parent=Os01t0743400-02
Chr01	irgsp1_rep	CDS	31075909	31076028	.	-	1	Parent=Os01t0743400-02
Chr01	irgsp1_rep	CDS	31074533	31074620	.	-	1	Parent=Os01t0743400-02
Chr01	irgsp1_rep	CDS	31074246	31074287	.	-	0	Parent=Os01t0743400-02
Chr01	irgsp1_rep	CDS	31073794	31073883	.	-	0	Parent=Os01t0743400-02
Chr01	irgsp1_rep	CDS	31073581	31073703	.	-	0	Parent=Os01t0743400-02
Chr01	irgsp1_rep	CDS	31072645	31072716	.	-	0	Parent=Os01t0743400-02
Chr01	irgsp1_rep	CDS	31072383	31072495	.	-	0	Parent=Os01t0743400-02
Chr01	irgsp1_rep	CDS	31072279	31072300	.	-	1	Parent=Os01t0743400-02
Chr01	irgsp1_rep	CDS	31072110	31072175	.	-	0	Parent=Os01t0743400-02
Chr01	irgsp1_rep	CDS	31071816	31071872	.	-	0	Parent=Os01t0743400-02
Chr01	irgsp1_rep	CDS	31071190	31071236	.	-	0	Parent=Os01t0743400-02
Chr01	irgsp1_rep	CDS	31071017	31071098	.	-	1	Parent=Os01t0743400-02
Chr01	irgsp1_rep	CDS	31070743	31070832	.	-	0	Parent=Os01t0743400-02
Chr01	irgsp1_rep	CDS	31070464	31070598	.	-	0	Parent=Os01t0743400-02
Chr01	irgsp1_rep	three_prime_UTR	31070191	31070463	.	-	.	Parent=Os01t0743400-02
Chr01	irgsp1_rep	mRNA	31076571	31081251	.	+	.	ID=Os01t0743500-01;Name=Os01t0743500-01;Locus_id=Os01g0743500;Oryzabase Gene Symbol Synonym(s)=OscytME3%2C OsEnS-13%2C NADP-ME%2C OsNADP-ME;Oryzabase Gene Name Synonym(s)=cytosolic NADP malic enzyme 3%2C endosperm-specific gene 13;Note=Cytosolic NADP malic enzyme.;Transcript_evidence=AK073858 (DDBJ%2C Best hit);ORF_evidence=Q6SZS7 (UniProt);GO=Biological Process: malate metabolic process (GO:0006108),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: malic enzyme activity (GO:0004470),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: malate dehydrogenase (oxaloacetate-decarboxylating) activity (GO:0016619),Molecular Function: metal ion binding (GO:0046872),Molecular Function: NAD binding (GO:0051287);InterPro=Malic oxidoreductase (IPR001891),Malic enzyme%2C N-terminal (IPR012301),Malic enzyme%2C NAD-binding (IPR012302),Malic enzyme%2C conserved site (IPR015884),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033072B12;Oryzabase=14060;Expression=AK073858;TENOR=Os01t0743500-01;KEGG=Os01t0743500-01 (EC:1.1.1.40)
Chr01	irgsp1_rep	five_prime_UTR	31076571	31076681	.	+	.	Parent=Os01t0743500-01
Chr01	irgsp1_rep	CDS	31076682	31076815	.	+	0	Parent=Os01t0743500-01
Chr01	irgsp1_rep	CDS	31077203	31077323	.	+	1	Parent=Os01t0743500-01
Chr01	irgsp1_rep	CDS	31077411	31077485	.	+	0	Parent=Os01t0743500-01
Chr01	irgsp1_rep	CDS	31077605	31077756	.	+	0	Parent=Os01t0743500-01
Chr01	irgsp1_rep	CDS	31077913	31078018	.	+	1	Parent=Os01t0743500-01
Chr01	irgsp1_rep	CDS	31078151	31078216	.	+	0	Parent=Os01t0743500-01
Chr01	irgsp1_rep	CDS	31078304	31078399	.	+	0	Parent=Os01t0743500-01
Chr01	irgsp1_rep	CDS	31078506	31078577	.	+	0	Parent=Os01t0743500-01
Chr01	irgsp1_rep	CDS	31078667	31078750	.	+	0	Parent=Os01t0743500-01
Chr01	irgsp1_rep	CDS	31078889	31078987	.	+	0	Parent=Os01t0743500-01
Chr01	irgsp1_rep	CDS	31079463	31079510	.	+	0	Parent=Os01t0743500-01
Chr01	irgsp1_rep	CDS	31079599	31079652	.	+	0	Parent=Os01t0743500-01
Chr01	irgsp1_rep	CDS	31079733	31079831	.	+	0	Parent=Os01t0743500-01
Chr01	irgsp1_rep	CDS	31079924	31080013	.	+	0	Parent=Os01t0743500-01
Chr01	irgsp1_rep	CDS	31080113	31080190	.	+	0	Parent=Os01t0743500-01
Chr01	irgsp1_rep	CDS	31080326	31080400	.	+	0	Parent=Os01t0743500-01
Chr01	irgsp1_rep	CDS	31080548	31080638	.	+	0	Parent=Os01t0743500-01
Chr01	irgsp1_rep	CDS	31080756	31080884	.	+	2	Parent=Os01t0743500-01
Chr01	irgsp1_rep	CDS	31080977	31081065	.	+	2	Parent=Os01t0743500-01
Chr01	irgsp1_rep	three_prime_UTR	31081066	31081251	.	+	.	Parent=Os01t0743500-01
Chr01	irgsp1_rep	mRNA	31083067	31087974	.	-	.	ID=Os01t0743600-01;Name=Os01t0743600-01;Locus_id=Os01g0743600;Oryzabase Gene Symbol Synonym(s)=OsEnS-14;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 14;Note=Peptidase S16%2C lon N-terminal domain containing protein.;Transcript_evidence=AK102317 (DDBJ%2C Best hit);ORF_evidence=B8A9D9 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: ATP-dependent peptidase activity (GO:0004176);InterPro=Peptidase S16%2C lon N-terminal (IPR003111),PUA-like domain (IPR015947);NIAS_FLcDNA=J033090F18;Oryzabase=18355;Expression=AK102317;TENOR=Os01t0743600-01;KEGG=Os01t0743600-01
Chr01	irgsp1_rep	five_prime_UTR	31087889	31087974	.	-	.	Parent=Os01t0743600-01
Chr01	irgsp1_rep	CDS	31087749	31087888	.	-	0	Parent=Os01t0743600-01
Chr01	irgsp1_rep	CDS	31087002	31087087	.	-	1	Parent=Os01t0743600-01
Chr01	irgsp1_rep	CDS	31086851	31086928	.	-	2	Parent=Os01t0743600-01
Chr01	irgsp1_rep	CDS	31086452	31086564	.	-	2	Parent=Os01t0743600-01
Chr01	irgsp1_rep	CDS	31086314	31086379	.	-	0	Parent=Os01t0743600-01
Chr01	irgsp1_rep	CDS	31085495	31085596	.	-	0	Parent=Os01t0743600-01
Chr01	irgsp1_rep	CDS	31084861	31085386	.	-	0	Parent=Os01t0743600-01
Chr01	irgsp1_rep	CDS	31084500	31084705	.	-	2	Parent=Os01t0743600-01
Chr01	irgsp1_rep	CDS	31083802	31083944	.	-	0	Parent=Os01t0743600-01
Chr01	irgsp1_rep	CDS	31083205	31083352	.	-	1	Parent=Os01t0743600-01
Chr01	irgsp1_rep	three_prime_UTR	31083067	31083204	.	-	.	Parent=Os01t0743600-01
Chr01	irgsp1_rep	mRNA	31078718	31087973	.	-	.	ID=Os01t0743600-02;Name=Os01t0743600-02;Locus_id=Os01g0743600;Oryzabase Gene Symbol Synonym(s)=OsEnS-14;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 14;Note=Peptidase S16%2C lon N-terminal domain containing protein.;Transcript_evidence=AK103798 (DDBJ%2C Best hit);ORF_evidence=B8A9D9 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: ATP-dependent peptidase activity (GO:0004176);InterPro=Peptidase S16%2C lon N-terminal (IPR003111),PUA-like domain (IPR015947);NIAS_FLcDNA=J033146A06;Oryzabase=18355;Expression=AK103798;TENOR=Os01t0743600-02;KEGG=Os01t0743600-02
Chr01	irgsp1_rep	five_prime_UTR	31087889	31087973	.	-	.	Parent=Os01t0743600-02
Chr01	irgsp1_rep	CDS	31087749	31087888	.	-	0	Parent=Os01t0743600-02
Chr01	irgsp1_rep	CDS	31087002	31087087	.	-	1	Parent=Os01t0743600-02
Chr01	irgsp1_rep	CDS	31086851	31086928	.	-	2	Parent=Os01t0743600-02
Chr01	irgsp1_rep	CDS	31086452	31086564	.	-	2	Parent=Os01t0743600-02
Chr01	irgsp1_rep	CDS	31086314	31086379	.	-	0	Parent=Os01t0743600-02
Chr01	irgsp1_rep	CDS	31085495	31085596	.	-	0	Parent=Os01t0743600-02
Chr01	irgsp1_rep	CDS	31084861	31085386	.	-	0	Parent=Os01t0743600-02
Chr01	irgsp1_rep	CDS	31084500	31084705	.	-	2	Parent=Os01t0743600-02
Chr01	irgsp1_rep	CDS	31083802	31083944	.	-	0	Parent=Os01t0743600-02
Chr01	irgsp1_rep	CDS	31083205	31083352	.	-	1	Parent=Os01t0743600-02
Chr01	irgsp1_rep	three_prime_UTR	31083196	31083204	.	-	.	Parent=Os01t0743600-02
Chr01	irgsp1_rep	three_prime_UTR	31078718	31079149	.	-	.	Parent=Os01t0743600-02
Chr01	irgsp1_rep	mRNA	31079332	31079810	.	-	.	ID=Os01t0743666-00;Name=Os01t0743666-00;Locus_id=Os01g0743666;Note=Non-protein coding transcript.;Transcript_evidence=CT828520 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os01t0743666-00
Chr01	irgsp1_rep	exon	31079332	31079810	.	-	.	Parent=Os01t0743666-00
Chr01	irgsp1_rep	mRNA	31082446	31083122	.	+	.	ID=Os01t0743732-00;Name=Os01t0743732-00;Locus_id=Os01g0743732;Note=Conserved hypothetical protein.;Transcript_evidence=AK062794 (DDBJ%2C Secondary hit);ORF_evidence=A2ZFD2 (UniProt);TENOR=Os01t0743732-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	31082446	31082446	.	+	.	Parent=Os01t0743732-00
Chr01	irgsp1_rep	CDS	31082447	31082602	.	+	0	Parent=Os01t0743732-00
Chr01	irgsp1_rep	three_prime_UTR	31082603	31083122	.	+	.	Parent=Os01t0743732-00
Chr01	irgsp1_rep	mRNA	31093047	31094953	.	+	.	ID=Os01t0743800-00;Name=Os01t0743800-00;Locus_id=Os01g0743800;CGSNL Gene Symbol=PHP1;CGSNL Gene Name=PSEUDO-PHOSPHOTRANSFER PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsPHP1%2C Hpt1%2C OsHP3%2C OsHpt1;Oryzabase Gene Name Synonym(s)=pseudo-phosphotransfer protein 1;Note=Similar to histidine-containing phosphotransfer protein 4.;Transcript_evidence=CT836592 (DDBJ%2C Best hit);ORF_evidence=NP_001147413.1 (RefSeq);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Molecular Function: signal transducer activity (GO:0004871);InterPro=Signal transduction histidine kinase%2C phosphotransfer (Hpt) domain (IPR008207);Oryzabase=9827;TENOR=Os01t0743800-00;KEGG=Os01t0743800-00
Chr01	irgsp1_rep	five_prime_UTR	31093047	31093134	.	+	.	Parent=Os01t0743800-00
Chr01	irgsp1_rep	CDS	31093135	31093191	.	+	0	Parent=Os01t0743800-00
Chr01	irgsp1_rep	CDS	31093384	31093517	.	+	0	Parent=Os01t0743800-00
Chr01	irgsp1_rep	CDS	31093653	31093721	.	+	1	Parent=Os01t0743800-00
Chr01	irgsp1_rep	CDS	31094274	31094345	.	+	1	Parent=Os01t0743800-00
Chr01	irgsp1_rep	CDS	31094469	31094541	.	+	1	Parent=Os01t0743800-00
Chr01	irgsp1_rep	CDS	31094643	31094693	.	+	0	Parent=Os01t0743800-00
Chr01	irgsp1_rep	three_prime_UTR	31094694	31094953	.	+	.	Parent=Os01t0743800-00
Chr01	irgsp1_rep	mRNA	31099412	31106801	.	+	.	ID=Os01t0744000-01;Name=Os01t0744000-01;Locus_id=Os01g0744000;Note=Similar to Kinesin heavy chain (Fragment).;Transcript_evidence=AK101026 (DDBJ%2C Best hit);ORF_evidence=NP_176551.3 (RefSeq);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=Calponin homology domain (IPR001715),Kinesin%2C motor domain (IPR001752);NIAS_FLcDNA=J023150E15;Expression=AK101026;TENOR=Os01t0744000-01;KEGG=Os01t0744000-01
Chr01	irgsp1_rep	five_prime_UTR	31099412	31099618	.	+	.	Parent=Os01t0744000-01
Chr01	irgsp1_rep	CDS	31099619	31099658	.	+	0	Parent=Os01t0744000-01
Chr01	irgsp1_rep	CDS	31100091	31100245	.	+	2	Parent=Os01t0744000-01
Chr01	irgsp1_rep	CDS	31100312	31100419	.	+	0	Parent=Os01t0744000-01
Chr01	irgsp1_rep	CDS	31101025	31101229	.	+	0	Parent=Os01t0744000-01
Chr01	irgsp1_rep	CDS	31101600	31101697	.	+	2	Parent=Os01t0744000-01
Chr01	irgsp1_rep	CDS	31101794	31101877	.	+	0	Parent=Os01t0744000-01
Chr01	irgsp1_rep	CDS	31101969	31102046	.	+	0	Parent=Os01t0744000-01
Chr01	irgsp1_rep	CDS	31102204	31102296	.	+	0	Parent=Os01t0744000-01
Chr01	irgsp1_rep	CDS	31102388	31102417	.	+	0	Parent=Os01t0744000-01
Chr01	irgsp1_rep	CDS	31102674	31103015	.	+	0	Parent=Os01t0744000-01
Chr01	irgsp1_rep	CDS	31103095	31103176	.	+	0	Parent=Os01t0744000-01
Chr01	irgsp1_rep	CDS	31103269	31103364	.	+	2	Parent=Os01t0744000-01
Chr01	irgsp1_rep	CDS	31103470	31103649	.	+	2	Parent=Os01t0744000-01
Chr01	irgsp1_rep	CDS	31103744	31103850	.	+	2	Parent=Os01t0744000-01
Chr01	irgsp1_rep	CDS	31103949	31104124	.	+	0	Parent=Os01t0744000-01
Chr01	irgsp1_rep	CDS	31104244	31104408	.	+	1	Parent=Os01t0744000-01
Chr01	irgsp1_rep	CDS	31104491	31104744	.	+	1	Parent=Os01t0744000-01
Chr01	irgsp1_rep	CDS	31104819	31104982	.	+	2	Parent=Os01t0744000-01
Chr01	irgsp1_rep	CDS	31105306	31105489	.	+	0	Parent=Os01t0744000-01
Chr01	irgsp1_rep	CDS	31105606	31105711	.	+	2	Parent=Os01t0744000-01
Chr01	irgsp1_rep	CDS	31106303	31106403	.	+	1	Parent=Os01t0744000-01
Chr01	irgsp1_rep	CDS	31106545	31106612	.	+	2	Parent=Os01t0744000-01
Chr01	irgsp1_rep	three_prime_UTR	31106613	31106801	.	+	.	Parent=Os01t0744000-01
Chr01	irgsp1_rep	mRNA	31104071	31106801	.	+	.	ID=Os01t0744000-02;Name=Os01t0744000-02;Locus_id=Os01g0744000;Note=Similar to Kinesin heavy chain (Fragment).;Transcript_evidence=AK058804 (DDBJ%2C Best hit);ORF_evidence=Q93XF2 (UniProt);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752);NIAS_FLcDNA=001-003-B07;Expression=AK058804;TENOR=Os01t0744000-02;KEGG=Os01t0744000-02
Chr01	irgsp1_rep	five_prime_UTR	31104071	31104071	.	+	.	Parent=Os01t0744000-02
Chr01	irgsp1_rep	CDS	31104072	31104124	.	+	0	Parent=Os01t0744000-02
Chr01	irgsp1_rep	CDS	31104244	31104408	.	+	1	Parent=Os01t0744000-02
Chr01	irgsp1_rep	CDS	31104491	31104744	.	+	1	Parent=Os01t0744000-02
Chr01	irgsp1_rep	CDS	31104819	31104982	.	+	2	Parent=Os01t0744000-02
Chr01	irgsp1_rep	CDS	31105306	31105489	.	+	0	Parent=Os01t0744000-02
Chr01	irgsp1_rep	CDS	31105606	31105711	.	+	2	Parent=Os01t0744000-02
Chr01	irgsp1_rep	CDS	31106303	31106403	.	+	1	Parent=Os01t0744000-02
Chr01	irgsp1_rep	CDS	31106545	31106612	.	+	2	Parent=Os01t0744000-02
Chr01	irgsp1_rep	three_prime_UTR	31106613	31106801	.	+	.	Parent=Os01t0744000-02
Chr01	irgsp1_rep	mRNA	31107715	31107785	.	-	.	ID=Os01t0744101-00;Name=Os01t0744101-00;Locus_id=Os01g0744101;Note=Non-protein coding transcript.;Transcript_evidence=X02683 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0744101-00
Chr01	irgsp1_rep	exon	31107715	31107785	.	-	.	Parent=Os01t0744101-00
Chr01	irgsp1_rep	mRNA	31108317	31110074	.	+	.	ID=Os01t0744200-01;Name=Os01t0744200-01;Locus_id=Os01g0744200;Note=Conserved hypothetical protein.;Transcript_evidence=AK059241 (DDBJ%2C Best hit);ORF_evidence=B9EZM3 (UniProt);NIAS_FLcDNA=001-024-F09;Expression=AK059241;TENOR=Os01t0744200-01;KEGG=Os01t0744200-01
Chr01	irgsp1_rep	five_prime_UTR	31108317	31108362	.	+	.	Parent=Os01t0744200-01
Chr01	irgsp1_rep	CDS	31108363	31108934	.	+	0	Parent=Os01t0744200-01
Chr01	irgsp1_rep	CDS	31109192	31109549	.	+	1	Parent=Os01t0744200-01
Chr01	irgsp1_rep	CDS	31109775	31110047	.	+	0	Parent=Os01t0744200-01
Chr01	irgsp1_rep	three_prime_UTR	31110048	31110074	.	+	.	Parent=Os01t0744200-01
Chr01	irgsp1_rep	mRNA	31111317	31116126	.	-	.	ID=Os01t0744300-01;Name=Os01t0744300-01;Locus_id=Os01g0744300;Oryzabase Gene Name Synonym(s)=casein kinase 1-gamma;Note=Similar to Casein kinase-like protein.;Transcript_evidence=AK102819 (DDBJ%2C Best hit);ORF_evidence=D8V7I8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033108N21;Oryzabase=17742;Expression=AK102819;TENOR=Os01t0744300-01;KEGG=Os01t0744300-01
Chr01	irgsp1_rep	five_prime_UTR	31115978	31116126	.	-	.	Parent=Os01t0744300-01
Chr01	irgsp1_rep	five_prime_UTR	31115613	31115744	.	-	.	Parent=Os01t0744300-01
Chr01	irgsp1_rep	CDS	31115529	31115612	.	-	0	Parent=Os01t0744300-01
Chr01	irgsp1_rep	CDS	31114893	31115006	.	-	0	Parent=Os01t0744300-01
Chr01	irgsp1_rep	CDS	31114729	31114802	.	-	0	Parent=Os01t0744300-01
Chr01	irgsp1_rep	CDS	31114571	31114640	.	-	1	Parent=Os01t0744300-01
Chr01	irgsp1_rep	CDS	31114423	31114478	.	-	0	Parent=Os01t0744300-01
Chr01	irgsp1_rep	CDS	31114277	31114348	.	-	1	Parent=Os01t0744300-01
Chr01	irgsp1_rep	CDS	31114089	31114183	.	-	1	Parent=Os01t0744300-01
Chr01	irgsp1_rep	CDS	31113905	31113971	.	-	2	Parent=Os01t0744300-01
Chr01	irgsp1_rep	CDS	31113331	31113460	.	-	1	Parent=Os01t0744300-01
Chr01	irgsp1_rep	CDS	31113035	31113253	.	-	0	Parent=Os01t0744300-01
Chr01	irgsp1_rep	CDS	31112807	31112946	.	-	0	Parent=Os01t0744300-01
Chr01	irgsp1_rep	CDS	31112529	31112703	.	-	1	Parent=Os01t0744300-01
Chr01	irgsp1_rep	CDS	31112300	31112390	.	-	0	Parent=Os01t0744300-01
Chr01	irgsp1_rep	CDS	31112055	31112212	.	-	2	Parent=Os01t0744300-01
Chr01	irgsp1_rep	CDS	31111788	31111976	.	-	0	Parent=Os01t0744300-01
Chr01	irgsp1_rep	CDS	31111640	31111699	.	-	0	Parent=Os01t0744300-01
Chr01	irgsp1_rep	three_prime_UTR	31111317	31111639	.	-	.	Parent=Os01t0744300-01
Chr01	irgsp1_rep	mRNA	31112295	31115007	.	+	.	ID=Os01t0744350-00;Name=Os01t0744350-00;Locus_id=Os01g0744350;Note=Hypothetical gene.;Transcript_evidence=BT084747 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0744350-00
Chr01	irgsp1_rep	five_prime_UTR	31112295	31112375	.	+	.	Parent=Os01t0744350-00
Chr01	irgsp1_rep	five_prime_UTR	31112514	31112693	.	+	.	Parent=Os01t0744350-00
Chr01	irgsp1_rep	five_prime_UTR	31112798	31112950	.	+	.	Parent=Os01t0744350-00
Chr01	irgsp1_rep	five_prime_UTR	31113039	31113250	.	+	.	Parent=Os01t0744350-00
Chr01	irgsp1_rep	five_prime_UTR	31113328	31113487	.	+	.	Parent=Os01t0744350-00
Chr01	irgsp1_rep	five_prime_UTR	31114047	31114181	.	+	.	Parent=Os01t0744350-00
Chr01	irgsp1_rep	five_prime_UTR	31114275	31114284	.	+	.	Parent=Os01t0744350-00
Chr01	irgsp1_rep	CDS	31114285	31114369	.	+	0	Parent=Os01t0744350-00
Chr01	irgsp1_rep	CDS	31114536	31114666	.	+	2	Parent=Os01t0744350-00
Chr01	irgsp1_rep	CDS	31114754	31114852	.	+	0	Parent=Os01t0744350-00
Chr01	irgsp1_rep	CDS	31114916	31115007	.	+	0	Parent=Os01t0744350-00
Chr01	irgsp1_rep	mRNA	31120708	31132724	.	-	.	ID=Os01t0744400-01;Name=Os01t0744400-01;Locus_id=Os01g0744400;Note=Similar to Isoform 2 of Golgin candidate 1.;Transcript_evidence=AK067648 (DDBJ%2C Best hit);ORF_evidence=Q8S8N9-2 (UniProt);NIAS_FLcDNA=J013112P22;Expression=AK067648;TENOR=Os01t0744400-01;KEGG=Os01t0744400-01
Chr01	irgsp1_rep	five_prime_UTR	31132666	31132724	.	-	.	Parent=Os01t0744400-01
Chr01	irgsp1_rep	CDS	31132638	31132665	.	-	0	Parent=Os01t0744400-01
Chr01	irgsp1_rep	CDS	31132238	31132318	.	-	2	Parent=Os01t0744400-01
Chr01	irgsp1_rep	CDS	31132109	31132158	.	-	2	Parent=Os01t0744400-01
Chr01	irgsp1_rep	CDS	31131388	31132026	.	-	0	Parent=Os01t0744400-01
Chr01	irgsp1_rep	CDS	31131227	31131289	.	-	0	Parent=Os01t0744400-01
Chr01	irgsp1_rep	CDS	31131059	31131136	.	-	0	Parent=Os01t0744400-01
Chr01	irgsp1_rep	CDS	31130725	31130928	.	-	0	Parent=Os01t0744400-01
Chr01	irgsp1_rep	CDS	31129707	31129763	.	-	0	Parent=Os01t0744400-01
Chr01	irgsp1_rep	CDS	31129542	31129616	.	-	0	Parent=Os01t0744400-01
Chr01	irgsp1_rep	CDS	31129384	31129455	.	-	0	Parent=Os01t0744400-01
Chr01	irgsp1_rep	CDS	31128169	31128231	.	-	0	Parent=Os01t0744400-01
Chr01	irgsp1_rep	CDS	31127988	31128086	.	-	0	Parent=Os01t0744400-01
Chr01	irgsp1_rep	CDS	31127697	31127774	.	-	0	Parent=Os01t0744400-01
Chr01	irgsp1_rep	CDS	31127382	31127450	.	-	0	Parent=Os01t0744400-01
Chr01	irgsp1_rep	CDS	31122127	31122174	.	-	0	Parent=Os01t0744400-01
Chr01	irgsp1_rep	CDS	31121939	31122034	.	-	0	Parent=Os01t0744400-01
Chr01	irgsp1_rep	CDS	31121768	31121844	.	-	0	Parent=Os01t0744400-01
Chr01	irgsp1_rep	CDS	31121569	31121614	.	-	1	Parent=Os01t0744400-01
Chr01	irgsp1_rep	CDS	31121386	31121484	.	-	0	Parent=Os01t0744400-01
Chr01	irgsp1_rep	CDS	31121250	31121294	.	-	0	Parent=Os01t0744400-01
Chr01	irgsp1_rep	CDS	31121001	31121063	.	-	0	Parent=Os01t0744400-01
Chr01	irgsp1_rep	three_prime_UTR	31120708	31121000	.	-	.	Parent=Os01t0744400-01
Chr01	irgsp1_rep	mRNA	31121384	31132742	.	+	.	ID=Os01t0744550-00;Name=Os01t0744550-00;Locus_id=Os01g0744550;Note=Hypothetical protein.;Transcript_evidence=tplb0051m06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0744550-00
Chr01	irgsp1_rep	five_prime_UTR	31121384	31121514	.	+	.	Parent=Os01t0744550-00
Chr01	irgsp1_rep	five_prime_UTR	31121751	31121841	.	+	.	Parent=Os01t0744550-00
Chr01	irgsp1_rep	five_prime_UTR	31121936	31122031	.	+	.	Parent=Os01t0744550-00
Chr01	irgsp1_rep	five_prime_UTR	31122122	31122161	.	+	.	Parent=Os01t0744550-00
Chr01	irgsp1_rep	five_prime_UTR	31127368	31127440	.	+	.	Parent=Os01t0744550-00
Chr01	irgsp1_rep	five_prime_UTR	31127694	31127774	.	+	.	Parent=Os01t0744550-00
Chr01	irgsp1_rep	five_prime_UTR	31127988	31128084	.	+	.	Parent=Os01t0744550-00
Chr01	irgsp1_rep	five_prime_UTR	31128167	31128231	.	+	.	Parent=Os01t0744550-00
Chr01	irgsp1_rep	five_prime_UTR	31129384	31129465	.	+	.	Parent=Os01t0744550-00
Chr01	irgsp1_rep	five_prime_UTR	31129553	31129600	.	+	.	Parent=Os01t0744550-00
Chr01	irgsp1_rep	five_prime_UTR	31129690	31129766	.	+	.	Parent=Os01t0744550-00
Chr01	irgsp1_rep	five_prime_UTR	31130733	31130937	.	+	.	Parent=Os01t0744550-00
Chr01	irgsp1_rep	five_prime_UTR	31131071	31131145	.	+	.	Parent=Os01t0744550-00
Chr01	irgsp1_rep	five_prime_UTR	31131337	31131616	.	+	.	Parent=Os01t0744550-00
Chr01	irgsp1_rep	CDS	31131617	31131979	.	+	0	Parent=Os01t0744550-00
Chr01	irgsp1_rep	three_prime_UTR	31131980	31132061	.	+	.	Parent=Os01t0744550-00
Chr01	irgsp1_rep	three_prime_UTR	31132227	31132316	.	+	.	Parent=Os01t0744550-00
Chr01	irgsp1_rep	three_prime_UTR	31132628	31132742	.	+	.	Parent=Os01t0744550-00
Chr01	irgsp1_rep	mRNA	31136522	31137056	.	-	.	ID=Os01t0744700-00;Name=Os01t0744700-00;Locus_id=Os01g0744700;Note=Protein of unknown function DUF1677%2C plant domain containing protein.;Transcript_evidence=AK374519 (DDBJ);ORF_evidence=B9EZM6 (UniProt);InterPro=Protein of unknown function DUF1677%2C plant (IPR012876);TENOR=Os01t0744700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	31136589	31137056	.	-	0	Parent=Os01t0744700-00
Chr01	irgsp1_rep	three_prime_UTR	31136522	31136588	.	-	.	Parent=Os01t0744700-00
Chr01	irgsp1_rep	mRNA	31157383	31157902	.	-	.	ID=Os01t0745000-00;Name=Os01t0745000-00;Locus_id=Os01g0745000;Note=Protein of unknown function DUF1677%2C plant domain containing protein.;Transcript_evidence=EU954525 (DDBJ);ORF_evidence=Q5JLY6 (UniProt);InterPro=Protein of unknown function DUF1677%2C plant (IPR012876);TENOR=Os01t0745000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	31157393	31157902	.	-	0	Parent=Os01t0745000-00
Chr01	irgsp1_rep	three_prime_UTR	31157383	31157392	.	-	.	Parent=Os01t0745000-00
Chr01	irgsp1_rep	mRNA	31165741	31168673	.	+	.	ID=Os01t0745300-00;Name=Os01t0745300-00;Locus_id=Os01g0745300;Note=Similar to cDNA%2C clone: J075185I03%2C full insert sequence.;Transcript_evidence=CT837743 (DDBJ%2C Best hit);ORF_evidence=B7F9E3 (UniProt);TENOR=Os01t0745300-00;KEGG=Os01t0745300-00
Chr01	irgsp1_rep	CDS	31165741	31166115	.	+	0	Parent=Os01t0745300-00
Chr01	irgsp1_rep	CDS	31166222	31166242	.	+	0	Parent=Os01t0745300-00
Chr01	irgsp1_rep	three_prime_UTR	31166243	31166285	.	+	.	Parent=Os01t0745300-00
Chr01	irgsp1_rep	three_prime_UTR	31166930	31166961	.	+	.	Parent=Os01t0745300-00
Chr01	irgsp1_rep	three_prime_UTR	31166968	31167074	.	+	.	Parent=Os01t0745300-00
Chr01	irgsp1_rep	three_prime_UTR	31167574	31167685	.	+	.	Parent=Os01t0745300-00
Chr01	irgsp1_rep	three_prime_UTR	31168434	31168673	.	+	.	Parent=Os01t0745300-00
Chr01	irgsp1_rep	mRNA	31170449	31170922	.	-	.	ID=Os01t0745400-01;Name=Os01t0745400-01;Locus_id=Os01g0745400;Note=Sec34-like protein family protein.;Transcript_evidence=AK107872 (DDBJ%2C Best hit);ORF_evidence=NP_001061944.1 (RefSeq);NIAS_FLcDNA=002-134-C09;TENOR=Os01t0745400-01
Chr01	irgsp1_rep	five_prime_UTR	31170714	31170922	.	-	.	Parent=Os01t0745400-01
Chr01	irgsp1_rep	CDS	31170549	31170713	.	-	0	Parent=Os01t0745400-01
Chr01	irgsp1_rep	three_prime_UTR	31170449	31170548	.	-	.	Parent=Os01t0745400-01
Chr01	irgsp1_rep	mRNA	31180196	31182456	.	-	.	ID=Os01t0745700-01;Name=Os01t0745700-01;Locus_id=Os01g0745700;CGSNL Gene Symbol=GATA6;CGSNL Gene Name=GATA TRANSCRIPTION FACTOR 6;Oryzabase Gene Symbol Synonym(s)=OsGATA6%2C OsGATA1%2C GATA1;Oryzabase Gene Name Synonym(s)=GATA transcription factor 6%2C GATA factor 6;Note=Similar to GATA transcription factor 3 (AtGATA-3).;Transcript_evidence=AK121896 (DDBJ%2C Best hit);ORF_evidence=A2WUZ9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Zinc finger%2C GATA-type (IPR000679),Zinc finger%2C NHR/GATA-type (IPR013088);NIAS_FLcDNA=J033105E11;Oryzabase=20491;Expression=AK121896;TENOR=Os01t0745700-01;KEGG=Os01t0745700-01
Chr01	irgsp1_rep	five_prime_UTR	31182179	31182456	.	-	.	Parent=Os01t0745700-01
Chr01	irgsp1_rep	CDS	31181888	31182178	.	-	0	Parent=Os01t0745700-01
Chr01	irgsp1_rep	CDS	31180505	31181377	.	-	0	Parent=Os01t0745700-01
Chr01	irgsp1_rep	three_prime_UTR	31180196	31180504	.	-	.	Parent=Os01t0745700-01
Chr01	irgsp1_rep	mRNA	31181687	31182337	.	-	.	ID=Os01t0745700-02;Name=Os01t0745700-02;Locus_id=Os01g0745700;CGSNL Gene Symbol=GATA6;CGSNL Gene Name=GATA TRANSCRIPTION FACTOR 6;Oryzabase Gene Symbol Synonym(s)=OsGATA6%2C OsGATA1%2C GATA1;Oryzabase Gene Name Synonym(s)=GATA transcription factor 6%2C GATA factor 6;Note=Hypothetical conserved gene.;Transcript_evidence=AK062377 (DDBJ%2C Best hit);ORF_evidence=Q5JLX9 (UniProt);NIAS_FLcDNA=001-102-B02;Oryzabase=20491;Expression=AK062377;TENOR=Os01t0745700-02;KEGG=Os01t0745700-02
Chr01	irgsp1_rep	five_prime_UTR	31182179	31182337	.	-	.	Parent=Os01t0745700-02
Chr01	irgsp1_rep	CDS	31181765	31182178	.	-	0	Parent=Os01t0745700-02
Chr01	irgsp1_rep	three_prime_UTR	31181687	31181764	.	-	.	Parent=Os01t0745700-02
Chr01	irgsp1_rep	mRNA	31180451	31181398	.	+	.	ID=Os01t0745850-00;Name=Os01t0745850-00;Locus_id=Os01g0745850;Note=Hypothetical protein.;Transcript_evidence=FP100733 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0745850-00
Chr01	irgsp1_rep	five_prime_UTR	31180451	31180654	.	+	.	Parent=Os01t0745850-00
Chr01	irgsp1_rep	CDS	31180655	31181350	.	+	0	Parent=Os01t0745850-00
Chr01	irgsp1_rep	three_prime_UTR	31181351	31181398	.	+	.	Parent=Os01t0745850-00
Chr01	irgsp1_rep	mRNA	31198401	31198781	.	+	.	ID=Os01t0746000-00;Name=Os01t0746000-00;Locus_id=Os01g0746000;Note=Similar to Phosphoenolpyruvate carboxylase.;Transcript_evidence=BT062669 (DDBJ);ORF_evidence=A6YM33 (UniProt);TENOR=Os01t0746000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	31198401	31198781	.	+	0	Parent=Os01t0746000-00
Chr01	irgsp1_rep	mRNA	31203445	31211235	.	+	.	ID=Os01t0746200-01;Name=Os01t0746200-01;Locus_id=Os01g0746200;RAP-DB Gene Symbol Synonym(s)=NUP85;RAP-DB Gene Name Synonym(s)=NUCLEAR PORIN 85;CGSNL Gene Symbol=NUP85;CGSNL Gene Name=NUCLEAR PORIN 85;Oryzabase Gene Symbol Synonym(s)=NUP85;Note=Nucleoporin%2C Common symbiosis signaling (SYM) pathway;Transcript_evidence=AK072636 (Genbank);ORF_evidence=Q8LIZ0 (UniProt);InterPro=Nuclear pore complex protein%2C Nucleoporin Nup85-like (IPR011502);NIAS_FLcDNA=J023133F04;Manual Curation=June 26%2C 2009;Literature_PMID=19033527,18794914;Oryzabase=8204;Expression=AK072636;TENOR=Os01t0746200-01;KEGG=Os01t0746200-01
Chr01	irgsp1_rep	five_prime_UTR	31203445	31203566	.	+	.	Parent=Os01t0746200-01
Chr01	irgsp1_rep	CDS	31203567	31203994	.	+	0	Parent=Os01t0746200-01
Chr01	irgsp1_rep	CDS	31205931	31206033	.	+	1	Parent=Os01t0746200-01
Chr01	irgsp1_rep	CDS	31206144	31206254	.	+	0	Parent=Os01t0746200-01
Chr01	irgsp1_rep	CDS	31206356	31206439	.	+	0	Parent=Os01t0746200-01
Chr01	irgsp1_rep	CDS	31206657	31206728	.	+	0	Parent=Os01t0746200-01
Chr01	irgsp1_rep	CDS	31206815	31206871	.	+	0	Parent=Os01t0746200-01
Chr01	irgsp1_rep	CDS	31207169	31207288	.	+	0	Parent=Os01t0746200-01
Chr01	irgsp1_rep	CDS	31208043	31208243	.	+	0	Parent=Os01t0746200-01
Chr01	irgsp1_rep	CDS	31208695	31208805	.	+	0	Parent=Os01t0746200-01
Chr01	irgsp1_rep	CDS	31208907	31208944	.	+	0	Parent=Os01t0746200-01
Chr01	irgsp1_rep	CDS	31209029	31209185	.	+	1	Parent=Os01t0746200-01
Chr01	irgsp1_rep	CDS	31209442	31209543	.	+	0	Parent=Os01t0746200-01
Chr01	irgsp1_rep	CDS	31209620	31209676	.	+	0	Parent=Os01t0746200-01
Chr01	irgsp1_rep	CDS	31209855	31210001	.	+	0	Parent=Os01t0746200-01
Chr01	irgsp1_rep	CDS	31210171	31210241	.	+	0	Parent=Os01t0746200-01
Chr01	irgsp1_rep	CDS	31210324	31210411	.	+	1	Parent=Os01t0746200-01
Chr01	irgsp1_rep	CDS	31210552	31210608	.	+	0	Parent=Os01t0746200-01
Chr01	irgsp1_rep	CDS	31210738	31210935	.	+	0	Parent=Os01t0746200-01
Chr01	irgsp1_rep	three_prime_UTR	31210936	31211235	.	+	.	Parent=Os01t0746200-01
Chr01	irgsp1_rep	mRNA	31205561	31211272	.	+	.	ID=Os01t0746200-02;Name=Os01t0746200-02;Locus_id=Os01g0746200;CGSNL Gene Symbol=NUP85;CGSNL Gene Name=NUCLEAR PORIN 85;Oryzabase Gene Symbol Synonym(s)=NUP85;Note=Similar to Nucleoporin.;Transcript_evidence=AK066787 (DDBJ%2C Best hit);ORF_evidence=A2A1E8 (UniProt);InterPro=Nuclear pore complex protein%2C Nucleoporin Nup85-like (IPR011502);NIAS_FLcDNA=J013075G22;Oryzabase=8204;Expression=AK066787;TENOR=Os01t0746200-02;KEGG=Os01t0746200-02
Chr01	irgsp1_rep	five_prime_UTR	31205561	31205895	.	+	.	Parent=Os01t0746200-02
Chr01	irgsp1_rep	CDS	31205896	31206033	.	+	0	Parent=Os01t0746200-02
Chr01	irgsp1_rep	CDS	31206144	31206254	.	+	0	Parent=Os01t0746200-02
Chr01	irgsp1_rep	CDS	31206356	31206439	.	+	0	Parent=Os01t0746200-02
Chr01	irgsp1_rep	CDS	31206657	31206728	.	+	0	Parent=Os01t0746200-02
Chr01	irgsp1_rep	CDS	31206815	31206871	.	+	0	Parent=Os01t0746200-02
Chr01	irgsp1_rep	CDS	31207169	31207288	.	+	0	Parent=Os01t0746200-02
Chr01	irgsp1_rep	CDS	31208043	31208243	.	+	0	Parent=Os01t0746200-02
Chr01	irgsp1_rep	CDS	31208695	31208805	.	+	0	Parent=Os01t0746200-02
Chr01	irgsp1_rep	CDS	31208907	31208944	.	+	0	Parent=Os01t0746200-02
Chr01	irgsp1_rep	CDS	31209029	31209185	.	+	1	Parent=Os01t0746200-02
Chr01	irgsp1_rep	CDS	31209442	31209543	.	+	0	Parent=Os01t0746200-02
Chr01	irgsp1_rep	CDS	31209620	31209676	.	+	0	Parent=Os01t0746200-02
Chr01	irgsp1_rep	CDS	31209855	31210001	.	+	0	Parent=Os01t0746200-02
Chr01	irgsp1_rep	CDS	31210171	31210241	.	+	0	Parent=Os01t0746200-02
Chr01	irgsp1_rep	CDS	31210324	31210411	.	+	1	Parent=Os01t0746200-02
Chr01	irgsp1_rep	CDS	31210552	31210608	.	+	0	Parent=Os01t0746200-02
Chr01	irgsp1_rep	CDS	31210738	31210935	.	+	0	Parent=Os01t0746200-02
Chr01	irgsp1_rep	three_prime_UTR	31210936	31211272	.	+	.	Parent=Os01t0746200-02
Chr01	irgsp1_rep	mRNA	31225458	31228566	.	-	.	ID=Os01t0746400-01;Name=Os01t0746400-01;Locus_id=Os01g0746400;RAP-DB Gene Symbol Synonym(s)=D10%2C OsCCD8b;RAP-DB Gene Name Synonym(s)=DWARF10%2C carotenoid cleavage dioxygenase 8b;CGSNL Gene Symbol=D10;CGSNL Gene Name=DWARF 'KIKEIBANSHINRIKI OR TOYOHIKARIBUNWAI TILLERING;Oryzabase Gene Symbol Synonym(s)=d10(d15%2Cd16)%2C d16%2C d15%2C dwf9%2C d10%2C OsCCD8b%2C OsCCD8%2C CCD8%2C OsD10;Oryzabase Gene Name Synonym(s)=kikeibanshinriki or toyohikaribunwai tillering dwarf%2C dwarf-10%2C carotenoid cleavage dioxygenase 8%2C DWARF 10%2C DWARF10%2C carotenoid cleavage dioxygenase 8b;Note=Carotenoid cleavage dioxygenase 8%2C Control of lateral bud outgrowth%2C Regulation of tillering%2C Strigolactones biosynthesis;Transcript_evidence=ab initio prediction;ORF_evidence=Q8LIY8;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on single donors with incorporation of molecular oxygen%2C incorporation of two atoms of oxygen (GO:0016702);InterPro=Carotenoid oxygenase (IPR004294);Manual Curation=September 1%2C 2017;Literature_PMID=18690207,17655651,DOI:10.1016/S1672-6308(13)60134-1;Oryzabase=473;TENOR=Os01t0746400-00;KEGG=Os01t0746400-00 (EC:1.13.11.69 1.13.11.70);Subcellular location=plastid (GO:0009536)
Chr01	irgsp1_rep	CDS	31228246	31228566	.	-	0	Parent=Os01t0746400-01
Chr01	irgsp1_rep	CDS	31226408	31227151	.	-	0	Parent=Os01t0746400-01
Chr01	irgsp1_rep	CDS	31226108	31226301	.	-	0	Parent=Os01t0746400-01
Chr01	irgsp1_rep	CDS	31225716	31226008	.	-	1	Parent=Os01t0746400-01
Chr01	irgsp1_rep	CDS	31225458	31225615	.	-	2	Parent=Os01t0746400-01
Chr01	irgsp1_rep	mRNA	31252512	31254894	.	-	.	ID=Os01t0746700-00;Name=Os01t0746700-00;Locus_id=Os01g0746700;Note=Similar to Mannan endo-1%2C4-beta-mannosidase 2.;Transcript_evidence=CT834944 (DDBJ%2C Best hit);ORF_evidence=Q0JJD4 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 5 (IPR001547),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 5%2C conserved site (IPR018087);TENOR=Os01t0746700-00;KEGG=Os01t0746700-00
Chr01	irgsp1_rep	five_prime_UTR	31254737	31254894	.	-	.	Parent=Os01t0746700-00
Chr01	irgsp1_rep	CDS	31254338	31254736	.	-	0	Parent=Os01t0746700-00
Chr01	irgsp1_rep	CDS	31254046	31254243	.	-	0	Parent=Os01t0746700-00
Chr01	irgsp1_rep	CDS	31253749	31253871	.	-	0	Parent=Os01t0746700-00
Chr01	irgsp1_rep	CDS	31253409	31253626	.	-	0	Parent=Os01t0746700-00
Chr01	irgsp1_rep	CDS	31252898	31253297	.	-	1	Parent=Os01t0746700-00
Chr01	irgsp1_rep	three_prime_UTR	31252663	31252897	.	-	.	Parent=Os01t0746700-00
Chr01	irgsp1_rep	three_prime_UTR	31252512	31252636	.	-	.	Parent=Os01t0746700-00
Chr01	irgsp1_rep	mRNA	31272337	31274375	.	+	.	ID=Os01t0747300-01;Name=Os01t0747300-01;Locus_id=Os01g0747300;Note=Similar to Plant-specific domain TIGR01615 family protein.;Transcript_evidence=AK066261 (DDBJ%2C Best hit);ORF_evidence=B6UDN7 (UniProt);InterPro=Protein of unknown function DUF506%2C plant (IPR006502);NIAS_FLcDNA=J013059N14;TENOR=Os01t0747300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	31272337	31272741	.	+	.	Parent=Os01t0747300-01
Chr01	irgsp1_rep	CDS	31272742	31273035	.	+	0	Parent=Os01t0747300-01
Chr01	irgsp1_rep	three_prime_UTR	31273036	31274375	.	+	.	Parent=Os01t0747300-01
Chr01	irgsp1_rep	mRNA	31275242	31279385	.	-	.	ID=Os01t0747400-01;Name=Os01t0747400-01;Locus_id=Os01g0747400;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK102467 (DDBJ%2C Best hit);ORF_evidence=B6SVR9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J033094F14;Expression=AK102467;TENOR=Os01t0747400-01;KEGG=Os01t0747400-01
Chr01	irgsp1_rep	five_prime_UTR	31279151	31279385	.	-	.	Parent=Os01t0747400-01
Chr01	irgsp1_rep	five_prime_UTR	31278478	31278730	.	-	.	Parent=Os01t0747400-01
Chr01	irgsp1_rep	CDS	31277302	31278477	.	-	0	Parent=Os01t0747400-01
Chr01	irgsp1_rep	CDS	31276338	31276793	.	-	0	Parent=Os01t0747400-01
Chr01	irgsp1_rep	CDS	31275471	31275752	.	-	0	Parent=Os01t0747400-01
Chr01	irgsp1_rep	three_prime_UTR	31275242	31275470	.	-	.	Parent=Os01t0747400-01
Chr01	irgsp1_rep	mRNA	31277930	31278444	.	+	.	ID=Os01t0747451-00;Name=Os01t0747451-00;Locus_id=Os01g0747451;Note=Hypothetical gene.;Transcript_evidence=EU948906 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0747451-00
Chr01	irgsp1_rep	five_prime_UTR	31277930	31277930	.	+	.	Parent=Os01t0747451-00
Chr01	irgsp1_rep	CDS	31277931	31278094	.	+	0	Parent=Os01t0747451-00
Chr01	irgsp1_rep	CDS	31278266	31278314	.	+	1	Parent=Os01t0747451-00
Chr01	irgsp1_rep	three_prime_UTR	31278315	31278444	.	+	.	Parent=Os01t0747451-00
Chr01	irgsp1_rep	mRNA	31283686	31286692	.	+	.	ID=Os01t0747500-01;Name=Os01t0747500-01;Locus_id=Os01g0747500;Note=Similar to Dihydroorotase (EC 3.5.2.3).;Transcript_evidence=AK122010 (DDBJ%2C Best hit);ORF_evidence=B6U6Z4 (UniProt);GO=Biological Process: pyrimidine base biosynthetic process (GO:0019856),Molecular Function: dihydroorotase activity (GO:0004151),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds%2C in cyclic amides (GO:0016812);InterPro=Dihydroorotase%2C conserved site (IPR002195),Dihydroorotase homodimeric type (IPR004721),Amidohydrolase 1 (IPR006680);NIAS_FLcDNA=J033111I01;Expression=AK122010;TENOR=Os01t0747500-01;KEGG=Os01t0747500-01 (EC:3.5.2.3)
Chr01	irgsp1_rep	five_prime_UTR	31283686	31283896	.	+	.	Parent=Os01t0747500-01
Chr01	irgsp1_rep	CDS	31283897	31284150	.	+	0	Parent=Os01t0747500-01
Chr01	irgsp1_rep	CDS	31284283	31284464	.	+	1	Parent=Os01t0747500-01
Chr01	irgsp1_rep	CDS	31284749	31284885	.	+	2	Parent=Os01t0747500-01
Chr01	irgsp1_rep	CDS	31285123	31285288	.	+	0	Parent=Os01t0747500-01
Chr01	irgsp1_rep	CDS	31285357	31285473	.	+	2	Parent=Os01t0747500-01
Chr01	irgsp1_rep	CDS	31285780	31285940	.	+	2	Parent=Os01t0747500-01
Chr01	irgsp1_rep	CDS	31286173	31286376	.	+	0	Parent=Os01t0747500-01
Chr01	irgsp1_rep	three_prime_UTR	31286377	31286692	.	+	.	Parent=Os01t0747500-01
Chr01	irgsp1_rep	mRNA	31286703	31288034	.	-	.	ID=Os01t0747600-01;Name=Os01t0747600-01;Locus_id=Os01g0747600;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK122148 (DDBJ%2C Best hit),AK073826 (DDBJ%2C Best hit);ORF_evidence=A2WV10 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J033138H13,J033067F03;Expression=AK122148;TENOR=Os01t0747600-01;KEGG=Os01t0747600-01
Chr01	irgsp1_rep	five_prime_UTR	31288014	31288034	.	-	.	Parent=Os01t0747600-01
Chr01	irgsp1_rep	CDS	31286850	31288013	.	-	0	Parent=Os01t0747600-01
Chr01	irgsp1_rep	three_prime_UTR	31286703	31286849	.	-	.	Parent=Os01t0747600-01
Chr01	irgsp1_rep	mRNA	31288175	31292795	.	+	.	ID=Os01t0747700-01;Name=Os01t0747700-01;Locus_id=Os01g0747700;Note=RNA-binding S4 domain containing protein.;Transcript_evidence=AK101311 (DDBJ%2C Best hit);ORF_evidence=B6TPG8 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=RNA-binding S4 (IPR002942),Photosystem II S4 (IPR017506);NIAS_FLcDNA=J033033O22;Expression=AK101311;TENOR=Os01t0747700-01;KEGG=Os01t0747700-01
Chr01	irgsp1_rep	five_prime_UTR	31288175	31288243	.	+	.	Parent=Os01t0747700-01
Chr01	irgsp1_rep	CDS	31288244	31288343	.	+	0	Parent=Os01t0747700-01
Chr01	irgsp1_rep	CDS	31288430	31288539	.	+	2	Parent=Os01t0747700-01
Chr01	irgsp1_rep	CDS	31289607	31289738	.	+	0	Parent=Os01t0747700-01
Chr01	irgsp1_rep	CDS	31289823	31289896	.	+	0	Parent=Os01t0747700-01
Chr01	irgsp1_rep	CDS	31289963	31290068	.	+	1	Parent=Os01t0747700-01
Chr01	irgsp1_rep	CDS	31290170	31290238	.	+	0	Parent=Os01t0747700-01
Chr01	irgsp1_rep	CDS	31290595	31290659	.	+	0	Parent=Os01t0747700-01
Chr01	irgsp1_rep	CDS	31290767	31290865	.	+	1	Parent=Os01t0747700-01
Chr01	irgsp1_rep	CDS	31291050	31291149	.	+	1	Parent=Os01t0747700-01
Chr01	irgsp1_rep	CDS	31291970	31292032	.	+	0	Parent=Os01t0747700-01
Chr01	irgsp1_rep	three_prime_UTR	31292033	31292081	.	+	.	Parent=Os01t0747700-01
Chr01	irgsp1_rep	three_prime_UTR	31292443	31292795	.	+	.	Parent=Os01t0747700-01
Chr01	irgsp1_rep	mRNA	31288849	31289902	.	-	.	ID=Os01t0747750-00;Name=Os01t0747750-00;Locus_id=Os01g0747750;Note=Hypothetical conserved gene.;Transcript_evidence=CT828452 (DDBJ%2C Best hit);ORF_evidence=Q33AZ2 (UniProt);TENOR=Os01t0747750-00;KEGG=Os01t0747750-00
Chr01	irgsp1_rep	five_prime_UTR	31289807	31289902	.	-	.	Parent=Os01t0747750-00
Chr01	irgsp1_rep	five_prime_UTR	31289553	31289681	.	-	.	Parent=Os01t0747750-00
Chr01	irgsp1_rep	CDS	31289511	31289552	.	-	0	Parent=Os01t0747750-00
Chr01	irgsp1_rep	CDS	31289041	31289154	.	-	0	Parent=Os01t0747750-00
Chr01	irgsp1_rep	three_prime_UTR	31288849	31289040	.	-	.	Parent=Os01t0747750-00
Chr01	irgsp1_rep	mRNA	31299014	31300157	.	-	.	ID=Os01t0747800-01;Name=Os01t0747800-01;Locus_id=Os01g0747800;Oryzabase Gene Symbol Synonym(s)=OsVQ3;Oryzabase Gene Name Synonym(s)=VQ motif-containing protein 3;Note=VQ domain containing protein.;Transcript_evidence=AK073166 (DDBJ%2C Best hit);ORF_evidence=NP_001151090.1 (RefSeq);InterPro=VQ (IPR008889);NIAS_FLcDNA=J033023G10;Oryzabase=13619;Expression=AK073166;TENOR=Os01t0747800-01;KEGG=Os01t0747800-01
Chr01	irgsp1_rep	five_prime_UTR	31300060	31300157	.	-	.	Parent=Os01t0747800-01
Chr01	irgsp1_rep	CDS	31299364	31300059	.	-	0	Parent=Os01t0747800-01
Chr01	irgsp1_rep	three_prime_UTR	31299014	31299363	.	-	.	Parent=Os01t0747800-01
Chr01	irgsp1_rep	mRNA	31308254	31312885	.	-	.	ID=Os01t0748000-00;Name=Os01t0748000-00;Locus_id=Os01g0748000;Oryzabase Gene Name Synonym(s)=ATP- binding protein;Note=Similar to Dynamin family protein.;Transcript_evidence=tplb0012n18 (Wheat FLcDNA);ORF_evidence=Q1EP28 (UniProt);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Dynamin%2C GTPase domain (IPR001401),Dynamin (IPR022812);Oryzabase=22712;TENOR=Os01t0748000-00;KEGG=Os01t0748000-00
Chr01	irgsp1_rep	CDS	31312514	31312885	.	-	0	Parent=Os01t0748000-00
Chr01	irgsp1_rep	CDS	31312184	31312375	.	-	0	Parent=Os01t0748000-00
Chr01	irgsp1_rep	CDS	31311785	31311991	.	-	0	Parent=Os01t0748000-00
Chr01	irgsp1_rep	CDS	31311239	31311667	.	-	0	Parent=Os01t0748000-00
Chr01	irgsp1_rep	CDS	31310911	31311138	.	-	0	Parent=Os01t0748000-00
Chr01	irgsp1_rep	CDS	31310638	31310833	.	-	0	Parent=Os01t0748000-00
Chr01	irgsp1_rep	CDS	31309414	31310071	.	-	2	Parent=Os01t0748000-00
Chr01	irgsp1_rep	CDS	31308536	31308722	.	-	1	Parent=Os01t0748000-00
Chr01	irgsp1_rep	three_prime_UTR	31308254	31308535	.	-	.	Parent=Os01t0748000-00
Chr01	irgsp1_rep	mRNA	31313398	31317559	.	-	.	ID=Os01t0748100-01;Name=Os01t0748100-01;Locus_id=Os01g0748100;Note=Conserved hypothetical protein.;Transcript_evidence=AK071261 (DDBJ%2C Best hit);ORF_evidence=B9EZN3 (UniProt);NIAS_FLcDNA=J023084C08;Expression=AK071261;TENOR=Os01t0748100-01;KEGG=Os01t0748100-01
Chr01	irgsp1_rep	five_prime_UTR	31317487	31317559	.	-	.	Parent=Os01t0748100-01
Chr01	irgsp1_rep	CDS	31317344	31317486	.	-	0	Parent=Os01t0748100-01
Chr01	irgsp1_rep	CDS	31315460	31315622	.	-	1	Parent=Os01t0748100-01
Chr01	irgsp1_rep	three_prime_UTR	31315440	31315459	.	-	.	Parent=Os01t0748100-01
Chr01	irgsp1_rep	three_prime_UTR	31314519	31314608	.	-	.	Parent=Os01t0748100-01
Chr01	irgsp1_rep	three_prime_UTR	31313398	31314426	.	-	.	Parent=Os01t0748100-01
Chr01	irgsp1_rep	mRNA	31318040	31319158	.	-	.	ID=Os01t0748150-01;Name=Os01t0748150-01;Locus_id=Os01g0748150;CGSNL Gene Symbol=ENODL1;CGSNL Gene Name=EARLY NODULIN LIKE PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsENODL1%2C OsELA1%2C ELA1;Oryzabase Gene Name Synonym(s)=early nodulin-like protein 1%2C early nodulin-like arabinogalactan protein 1%2C eNod-like AGP 1;Note=Cupredoxin domain containing protein.;Transcript_evidence=AK242185 (DDBJ%2C Best hit);ORF_evidence=Q5JNJ5 (UniProt);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);NIAS_FLcDNA=J075161H07;Oryzabase=9726;TENOR=Os01t0748150-01;KEGG=Os01t0748150-01
Chr01	irgsp1_rep	five_prime_UTR	31319089	31319158	.	-	.	Parent=Os01t0748150-01
Chr01	irgsp1_rep	CDS	31318902	31319088	.	-	0	Parent=Os01t0748150-01
Chr01	irgsp1_rep	CDS	31318271	31318797	.	-	2	Parent=Os01t0748150-01
Chr01	irgsp1_rep	three_prime_UTR	31318040	31318270	.	-	.	Parent=Os01t0748150-01
Chr01	irgsp1_rep	mRNA	31320668	31322049	.	-	.	ID=Os01t0748200-00;Name=Os01t0748200-00;Locus_id=Os01g0748200;Note=Conserved hypothetical protein.;Transcript_evidence=AK372402 (DDBJ);ORF_evidence=Q5JNJ4 (UniProt);TENOR=Os01t0748200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	31320709	31322049	.	-	0	Parent=Os01t0748200-00
Chr01	irgsp1_rep	three_prime_UTR	31320668	31320708	.	-	.	Parent=Os01t0748200-00
Chr01	irgsp1_rep	mRNA	31324550	31328260	.	-	.	ID=Os01t0748300-00;Name=Os01t0748300-00;Locus_id=Os01g0748300;Note=Protein of unknown function DUF584 domain containing protein.;Transcript_evidence=EU973290 (DDBJ);ORF_evidence=NP_001044239.1 (RefSeq);InterPro=Protein of unknown function DUF584 (IPR007608);TENOR=Os01t0748300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	31328258	31328260	.	-	.	Parent=Os01t0748300-00
Chr01	irgsp1_rep	CDS	31328210	31328257	.	-	0	Parent=Os01t0748300-00
Chr01	irgsp1_rep	CDS	31324567	31324986	.	-	0	Parent=Os01t0748300-00
Chr01	irgsp1_rep	three_prime_UTR	31324550	31324566	.	-	.	Parent=Os01t0748300-00
Chr01	irgsp1_rep	mRNA	31331405	31333350	.	+	.	ID=Os01t0748500-01;Name=Os01t0748500-01;Locus_id=Os01g0748500;CGSNL Gene Symbol=GELP25;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 25;Oryzabase Gene Symbol Synonym(s)=OsGELP25;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 25;Note=Similar to anther-specific proline-rich protein APG.;Transcript_evidence=AK241862 (DDBJ%2C Best hit);ORF_evidence=NP_001149080.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=J065216H16;Oryzabase=10975;TENOR=Os01t0748500-01;KEGG=Os01t0748500-01
Chr01	irgsp1_rep	five_prime_UTR	31331405	31331531	.	+	.	Parent=Os01t0748500-01
Chr01	irgsp1_rep	CDS	31331532	31331772	.	+	0	Parent=Os01t0748500-01
Chr01	irgsp1_rep	CDS	31331872	31331996	.	+	2	Parent=Os01t0748500-01
Chr01	irgsp1_rep	CDS	31332137	31332382	.	+	0	Parent=Os01t0748500-01
Chr01	irgsp1_rep	CDS	31332487	31332742	.	+	0	Parent=Os01t0748500-01
Chr01	irgsp1_rep	CDS	31332844	31333067	.	+	2	Parent=Os01t0748500-01
Chr01	irgsp1_rep	three_prime_UTR	31333068	31333350	.	+	.	Parent=Os01t0748500-01
Chr01	irgsp1_rep	mRNA	31333330	31337096	.	-	.	ID=Os01t0748600-01;Name=Os01t0748600-01;Locus_id=Os01g0748600;Note=Similar to Protein kinase family protein.;Transcript_evidence=AK071920 (DDBJ%2C Best hit);ORF_evidence=Q1ENV7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J013072M02;TENOR=Os01t0748600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	31336953	31337096	.	-	.	Parent=Os01t0748600-01
Chr01	irgsp1_rep	CDS	31336611	31336952	.	-	0	Parent=Os01t0748600-01
Chr01	irgsp1_rep	CDS	31336252	31336326	.	-	0	Parent=Os01t0748600-01
Chr01	irgsp1_rep	CDS	31336060	31336155	.	-	0	Parent=Os01t0748600-01
Chr01	irgsp1_rep	CDS	31335784	31335867	.	-	0	Parent=Os01t0748600-01
Chr01	irgsp1_rep	CDS	31335646	31335663	.	-	0	Parent=Os01t0748600-01
Chr01	irgsp1_rep	three_prime_UTR	31335543	31335645	.	-	.	Parent=Os01t0748600-01
Chr01	irgsp1_rep	three_prime_UTR	31334884	31334963	.	-	.	Parent=Os01t0748600-01
Chr01	irgsp1_rep	three_prime_UTR	31334733	31334795	.	-	.	Parent=Os01t0748600-01
Chr01	irgsp1_rep	three_prime_UTR	31334525	31334643	.	-	.	Parent=Os01t0748600-01
Chr01	irgsp1_rep	three_prime_UTR	31334315	31334400	.	-	.	Parent=Os01t0748600-01
Chr01	irgsp1_rep	three_prime_UTR	31334066	31334187	.	-	.	Parent=Os01t0748600-01
Chr01	irgsp1_rep	three_prime_UTR	31333757	31333868	.	-	.	Parent=Os01t0748600-01
Chr01	irgsp1_rep	three_prime_UTR	31333330	31333636	.	-	.	Parent=Os01t0748600-01
Chr01	irgsp1_rep	mRNA	31333328	31337084	.	-	.	ID=Os01t0748600-02;Name=Os01t0748600-02;Locus_id=Os01g0748600;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK104674 (DDBJ%2C Best hit);ORF_evidence=Q1EP25 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: regulation of signal transduction (GO:0009966),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Ankyrin repeat (IPR002110),Protein kinase-like domain (IPR011009),Integrin-linked protein kinase (IPR016253),Serine/threonine-protein kinase-like domain (IPR017442),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=001-031-B05;Expression=AK104674;TENOR=Os01t0748600-02;KEGG=Os01t0748600-02
Chr01	irgsp1_rep	five_prime_UTR	31336953	31337084	.	-	.	Parent=Os01t0748600-02
Chr01	irgsp1_rep	CDS	31336611	31336952	.	-	0	Parent=Os01t0748600-02
Chr01	irgsp1_rep	CDS	31336252	31336326	.	-	0	Parent=Os01t0748600-02
Chr01	irgsp1_rep	CDS	31336060	31336155	.	-	0	Parent=Os01t0748600-02
Chr01	irgsp1_rep	CDS	31335782	31335867	.	-	0	Parent=Os01t0748600-02
Chr01	irgsp1_rep	CDS	31335543	31335663	.	-	1	Parent=Os01t0748600-02
Chr01	irgsp1_rep	CDS	31334884	31334963	.	-	0	Parent=Os01t0748600-02
Chr01	irgsp1_rep	CDS	31334733	31334795	.	-	1	Parent=Os01t0748600-02
Chr01	irgsp1_rep	CDS	31334525	31334643	.	-	1	Parent=Os01t0748600-02
Chr01	irgsp1_rep	CDS	31334315	31334400	.	-	2	Parent=Os01t0748600-02
Chr01	irgsp1_rep	CDS	31334066	31334187	.	-	0	Parent=Os01t0748600-02
Chr01	irgsp1_rep	CDS	31333757	31333868	.	-	1	Parent=Os01t0748600-02
Chr01	irgsp1_rep	CDS	31333532	31333636	.	-	0	Parent=Os01t0748600-02
Chr01	irgsp1_rep	three_prime_UTR	31333328	31333531	.	-	.	Parent=Os01t0748600-02
Chr01	irgsp1_rep	mRNA	31343694	31345522	.	+	.	ID=Os01t0748800-00;Name=Os01t0748800-00;Locus_id=Os01g0748800;Oryzabase Gene Name Synonym(s)=PEBP family protein%2C PhosphatidylEthanolamine-Binding Protein;Note=Similar to ZCN12.;Transcript_evidence=AB361063 (DDBJ);ORF_evidence=A8WES4 (UniProt);InterPro=Phosphatidylethanolamine-binding protein PEBP (IPR008914);Oryzabase=22763;TENOR=Os01t0748800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	31343694	31343751	.	+	.	Parent=Os01t0748800-00
Chr01	irgsp1_rep	five_prime_UTR	31344046	31344046	.	+	.	Parent=Os01t0748800-00
Chr01	irgsp1_rep	CDS	31344047	31344083	.	+	0	Parent=Os01t0748800-00
Chr01	irgsp1_rep	CDS	31345287	31345522	.	+	2	Parent=Os01t0748800-00
Chr01	irgsp1_rep	mRNA	31349612	31353103	.	+	.	ID=Os01t0748900-01;Name=Os01t0748900-01;Locus_id=Os01g0748900;Note=Membrane attack complex component/perforin/complement C9 family protein.;Transcript_evidence=AK072413 (DDBJ%2C Best hit);ORF_evidence=NP_001149965.1 (RefSeq);InterPro=Membrane attack complex component/perforin (MACPF) domain (IPR020864);NIAS_FLcDNA=J023083G09;Expression=AK072413;TENOR=Os01t0748900-01;KEGG=Os01t0748900-01
Chr01	irgsp1_rep	five_prime_UTR	31349612	31349860	.	+	.	Parent=Os01t0748900-01
Chr01	irgsp1_rep	CDS	31349861	31350133	.	+	0	Parent=Os01t0748900-01
Chr01	irgsp1_rep	CDS	31350297	31350538	.	+	0	Parent=Os01t0748900-01
Chr01	irgsp1_rep	CDS	31350669	31350864	.	+	1	Parent=Os01t0748900-01
Chr01	irgsp1_rep	CDS	31351161	31351344	.	+	0	Parent=Os01t0748900-01
Chr01	irgsp1_rep	CDS	31351726	31351889	.	+	2	Parent=Os01t0748900-01
Chr01	irgsp1_rep	CDS	31352196	31352798	.	+	0	Parent=Os01t0748900-01
Chr01	irgsp1_rep	three_prime_UTR	31352799	31353103	.	+	.	Parent=Os01t0748900-01
Chr01	irgsp1_rep	mRNA	31349771	31353150	.	+	.	ID=Os01t0748900-02;Name=Os01t0748900-02;Locus_id=Os01g0748900;Note=Membrane attack complex component/perforin/complement C9 family protein.;Transcript_evidence=AK071946 (DDBJ%2C Best hit);ORF_evidence=NP_001149965.1 (RefSeq);InterPro=Membrane attack complex component/perforin (MACPF) domain (IPR020864);NIAS_FLcDNA=J013083J19;Expression=AK071946;TENOR=Os01t0748900-02;KEGG=Os01t0748900-02
Chr01	irgsp1_rep	five_prime_UTR	31349771	31349860	.	+	.	Parent=Os01t0748900-02
Chr01	irgsp1_rep	CDS	31349861	31350133	.	+	0	Parent=Os01t0748900-02
Chr01	irgsp1_rep	CDS	31350297	31350538	.	+	0	Parent=Os01t0748900-02
Chr01	irgsp1_rep	CDS	31350669	31350864	.	+	1	Parent=Os01t0748900-02
Chr01	irgsp1_rep	CDS	31351161	31351344	.	+	0	Parent=Os01t0748900-02
Chr01	irgsp1_rep	CDS	31351726	31351889	.	+	2	Parent=Os01t0748900-02
Chr01	irgsp1_rep	CDS	31352196	31352798	.	+	0	Parent=Os01t0748900-02
Chr01	irgsp1_rep	three_prime_UTR	31352799	31353150	.	+	.	Parent=Os01t0748900-02
Chr01	irgsp1_rep	mRNA	31353284	31358930	.	+	.	ID=Os01t0748950-01;Name=Os01t0748950-01;Locus_id=Os01g0748950;RAP-DB Gene Symbol Synonym(s)=OsNPF4.5;Note=Nitrate transporter of the NRT1/NPF family%2C Arbuscular mycorrhizal (AM)-induced nitrate transporter%2C Mycorrhizal nitrate acquisition%2C Symbiotic nitrogen uptake;Transcript_evidence=AK242252 (truncated),XM_015766201;ORF_evidence=XP_015621687;GO=Biological Process: transmembrane transport (GO:0055085),Molecular Function: transmembrane transporter activity (GO:0022857),Cellular Component: membrane (GO:0016020);InterPro=MFS transporter superfamily (IPR036259),Proton-dependent oligopeptide transporter family (IPR000109);NIAS_FLcDNA=J075182G16 (truncated);Manual Curation=June 29%2C 2020;Literature_PMID=32586957;TENOR=Os01t0748950-01;KEGG=Os01t0748950-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=plasma membrane (GO:0005886)
Chr01	irgsp1_rep	five_prime_UTR	31353284	31354028	.	+	.	Parent=Os01t0748950-01
Chr01	irgsp1_rep	five_prime_UTR	31354275	31354376	.	+	.	Parent=Os01t0748950-01
Chr01	irgsp1_rep	five_prime_UTR	31354488	31354680	.	+	.	Parent=Os01t0748950-01
Chr01	irgsp1_rep	CDS	31354681	31354683	.	+	0	Parent=Os01t0748950-01
Chr01	irgsp1_rep	CDS	31354770	31354820	.	+	0	Parent=Os01t0748950-01
Chr01	irgsp1_rep	CDS	31355801	31355842	.	+	0	Parent=Os01t0748950-01
Chr01	irgsp1_rep	CDS	31356184	31356283	.	+	0	Parent=Os01t0748950-01
Chr01	irgsp1_rep	CDS	31356781	31356998	.	+	2	Parent=Os01t0748950-01
Chr01	irgsp1_rep	CDS	31357109	31357549	.	+	0	Parent=Os01t0748950-01
Chr01	irgsp1_rep	CDS	31357658	31357785	.	+	0	Parent=Os01t0748950-01
Chr01	irgsp1_rep	CDS	31357873	31358734	.	+	1	Parent=Os01t0748950-01
Chr01	irgsp1_rep	three_prime_UTR	31358735	31358930	.	+	.	Parent=Os01t0748950-01
Chr01	irgsp1_rep	mRNA	31359199	31360276	.	+	.	ID=Os01t0749000-01;Name=Os01t0749000-01;Locus_id=Os01g0749000;Oryzabase Gene Symbol Synonym(s)=OsSTA32;Note=Protein of unknown function DUF1264 family protein.;Transcript_evidence=AK107290 (DDBJ%2C Best hit),AK107265 (DDBJ%2C Best hit);ORF_evidence=NP_001152700.1 (RefSeq);InterPro=Protein of unknown function DUF1264 (IPR010686);NIAS_FLcDNA=002-126-B10,002-125-H05;Oryzabase=19339;Expression=AK107290;TENOR=Os01t0749000-01;KEGG=Os01t0749000-01
Chr01	irgsp1_rep	five_prime_UTR	31359199	31359254	.	+	.	Parent=Os01t0749000-01
Chr01	irgsp1_rep	CDS	31359255	31359555	.	+	0	Parent=Os01t0749000-01
Chr01	irgsp1_rep	CDS	31359648	31360105	.	+	2	Parent=Os01t0749000-01
Chr01	irgsp1_rep	three_prime_UTR	31360106	31360276	.	+	.	Parent=Os01t0749000-01
Chr01	irgsp1_rep	mRNA	31359209	31362009	.	+	.	ID=Os01t0749000-02;Name=Os01t0749000-02;Locus_id=Os01g0749000;Oryzabase Gene Symbol Synonym(s)=OsSTA32;Note=Protein of unknown function DUF1264 family protein.;Transcript_evidence=AK107255 (DDBJ%2C Best hit);ORF_evidence=NP_001152700.1 (RefSeq);InterPro=Protein of unknown function DUF1264 (IPR010686);NIAS_FLcDNA=002-125-G07;Oryzabase=19339;Expression=AK107255;TENOR=Os01t0749000-02;KEGG=Os01t0749000-02
Chr01	irgsp1_rep	five_prime_UTR	31359209	31359254	.	+	.	Parent=Os01t0749000-02
Chr01	irgsp1_rep	CDS	31359255	31359555	.	+	0	Parent=Os01t0749000-02
Chr01	irgsp1_rep	CDS	31359648	31360105	.	+	2	Parent=Os01t0749000-02
Chr01	irgsp1_rep	three_prime_UTR	31360106	31360256	.	+	.	Parent=Os01t0749000-02
Chr01	irgsp1_rep	three_prime_UTR	31361537	31362009	.	+	.	Parent=Os01t0749000-02
Chr01	irgsp1_rep	mRNA	31362655	31365485	.	+	.	ID=Os01t0749100-01;Name=Os01t0749100-01;Locus_id=Os01g0749100;Note=Protein of unknown function DUF616 family protein.;Transcript_evidence=AK241895 (DDBJ%2C Best hit);ORF_evidence=NP_001152022.1 (RefSeq);InterPro=Protein of unknown function DUF616 (IPR006852);NIAS_FLcDNA=J075013A22;TENOR=Os01t0749100-01;KEGG=Os01t0749100-01
Chr01	irgsp1_rep	five_prime_UTR	31362655	31362670	.	+	.	Parent=Os01t0749100-01
Chr01	irgsp1_rep	CDS	31362671	31362986	.	+	0	Parent=Os01t0749100-01
Chr01	irgsp1_rep	CDS	31363508	31363734	.	+	2	Parent=Os01t0749100-01
Chr01	irgsp1_rep	CDS	31363823	31363999	.	+	0	Parent=Os01t0749100-01
Chr01	irgsp1_rep	CDS	31364097	31364252	.	+	0	Parent=Os01t0749100-01
Chr01	irgsp1_rep	CDS	31364520	31364796	.	+	0	Parent=Os01t0749100-01
Chr01	irgsp1_rep	CDS	31364934	31365190	.	+	2	Parent=Os01t0749100-01
Chr01	irgsp1_rep	three_prime_UTR	31365191	31365485	.	+	.	Parent=Os01t0749100-01
Chr01	irgsp1_rep	mRNA	31367052	31369399	.	+	.	ID=Os01t0749200-01;Name=Os01t0749200-01;Locus_id=Os01g0749200;RAP-DB Gene Symbol Synonym(s)=WLP1%2C cp rpl13%2C cp RPL13;RAP-DB Gene Name Synonym(s)=chloroplast ribosomal protein L13%2C chloroplast RPL13;Oryzabase Gene Symbol Synonym(s)=cp rpl13%2C cp RPL13%2C WLP1%2C RPL13;Oryzabase Gene Name Synonym(s)=chloroplast ribosomal protein L13%2C chloroplast RPL13%2C white leaf and panicle one%2C white leaf and panicle 1%2C white leaf and panicles 1;Note=Chloroplast ribosome L13 protein%2C Chloroplast development under low temperature conditions;Transcript_evidence=AK072760,AK099041,AK104146,AK119189;ORF_evidence=Q94J17;GO=Biological Process: translation (GO:0006412),Molecular Function: structural constituent of ribosome (GO:0003735),Cellular Component: ribosome (GO:0005840);InterPro=Ribosomal protein L13 (IPR005822),Ribosomal protein L13%2C bacterial-type (IPR005823),Ribosomal protein L13 domain (IPR023564),Ribosomal protein L13%2C conserved site (IPR023563);NIAS_FLcDNA=J023139E02, J013130F13, 006-207-D01, 001-039-H01;Manual Curation=September 28%2C 2015;Literature_PMID=24132771;Oryzabase=20149;TENOR=Os01t0749200-01
Chr01	irgsp1_rep	five_prime_UTR	31367052	31367151	.	+	.	Parent=Os01t0749200-01
Chr01	irgsp1_rep	CDS	31367152	31367376	.	+	0	Parent=Os01t0749200-01
Chr01	irgsp1_rep	CDS	31367938	31368123	.	+	0	Parent=Os01t0749200-01
Chr01	irgsp1_rep	CDS	31368405	31368575	.	+	0	Parent=Os01t0749200-01
Chr01	irgsp1_rep	CDS	31369049	31369168	.	+	0	Parent=Os01t0749200-01
Chr01	irgsp1_rep	three_prime_UTR	31369169	31369399	.	+	.	Parent=Os01t0749200-01
Chr01	irgsp1_rep	mRNA	31370502	31372631	.	+	.	ID=Os01t0749300-01;Name=Os01t0749300-01;Locus_id=Os01g0749300;RAP-DB Gene Symbol Synonym(s)=HSFA4A%2C OsHsfA4a%2C OsHsf-04%2C HSFA4B%2C HSF04%2C HSF9%2C OsHsfA4b%2C OsHSF9;RAP-DB Gene Name Synonym(s)=HEAT STRESS TRANSCRIPTION FACTOR A4a%2C Heat stress transcription factor A4a%2C Heat stress transcription factor A-4b%2C Heat stress transcription factor 4%2C heat shock transcription factor 9;CGSNL Gene Symbol=HSFA4A;CGSNL Gene Name=HEAT STRESS TRANSCRIPTION FACTOR A4a;Oryzabase Gene Symbol Synonym(s)=OsHsfA4a%2C OsHsf-04%2C HSFA4B%2C HSF04%2C OsHSF4%2C HSF4%2C HSF9%2C OsHsfA4b%2C OsHSF9;Oryzabase Gene Name Synonym(s)=Heat stress transcription factor A4a%2C Heat stress transcription factor A-4b%2C Heat stress transcription factor 4%2C heat shock transcription factor 9;Note=Heat shock transcription factor%2C Cadmium tolerance%2C Heat stress response;Transcript_evidence=AY344491 (DDBJ);ORF_evidence=Q94J16 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Heat shock factor (HSF)-type%2C DNA-binding (IPR000232);Manual Curation=January 25%2C 2010;Literature_PMID=15200645,17150959,20028842,18407058,19192388;Oryzabase=8554;TENOR=Os01t0749300-01
Chr01	irgsp1_rep	five_prime_UTR	31370502	31370592	.	+	.	Parent=Os01t0749300-01
Chr01	irgsp1_rep	CDS	31370593	31370805	.	+	0	Parent=Os01t0749300-01
Chr01	irgsp1_rep	CDS	31371388	31372497	.	+	0	Parent=Os01t0749300-01
Chr01	irgsp1_rep	three_prime_UTR	31372498	31372631	.	+	.	Parent=Os01t0749300-01
Chr01	irgsp1_rep	mRNA	31370413	31372729	.	+	.	ID=Os01t0749300-02;Name=Os01t0749300-02;Locus_id=Os01g0749300;RAP-DB Gene Symbol Synonym(s)=HSFA4A%2C OsHsfA4a%2C OsHsfA4b%2C OsHsf-04%2C HSFA4B%2C HSF04%2C OsHSF9%2C RHSF9%2C HSF9;RAP-DB Gene Name Synonym(s)=HEAT STRESS TRANSCRIPTION FACTOR A4a%2C Heat shock transcription factor A4a%2C Heat stress transcription factor A4a%2C Heat stress transcription factor A-4b%2C Heat stress transcription factor 4%2C Heat shock transcription factor 9;CGSNL Gene Symbol=HSFA4A;CGSNL Gene Name=HEAT STRESS TRANSCRIPTION FACTOR A4a;Oryzabase Gene Symbol Synonym(s)=OsHsfA4a%2C OsHsf-04%2C HSFA4B%2C HSF04%2C OsHSF4%2C HSF4%2C HSF9%2C OsHsfA4b%2C OsHSF9;Oryzabase Gene Name Synonym(s)=Heat stress transcription factor A4a%2C Heat stress transcription factor A-4b%2C Heat stress transcription factor 4%2C heat shock transcription factor 9;Note=Heat shock transcription factor%2C Cadmium tolerance%2C Heat stress response;Transcript_evidence=AK109856 (DDBJ);ORF_evidence=Q94J16 (UniProt),B7F2T5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Heat shock factor (HSF)-type%2C DNA-binding (IPR000232);NIAS_FLcDNA=002-148-G05;Manual Curation=January 25%2C 2010;Literature_PMID=15200645,17150959,20028842,18407058,19192388;Oryzabase=8554;Expression=AK109856;TENOR=Os01t0749300-02
Chr01	irgsp1_rep	five_prime_UTR	31370413	31370592	.	+	.	Parent=Os01t0749300-02
Chr01	irgsp1_rep	CDS	31370593	31370805	.	+	0	Parent=Os01t0749300-02
Chr01	irgsp1_rep	CDS	31371388	31372497	.	+	0	Parent=Os01t0749300-02
Chr01	irgsp1_rep	three_prime_UTR	31372498	31372729	.	+	.	Parent=Os01t0749300-02
Chr01	irgsp1_rep	mRNA	31373447	31377544	.	-	.	ID=Os01t0749400-02;Name=Os01t0749400-02;Locus_id=Os01g0749400;CGSNL Gene Symbol=TPS2;CGSNL Gene Name=TREHALOSE-6-PHOSPHATE SYNTHASE 2;Oryzabase Gene Symbol Synonym(s)=OsTPS2;Note=HAD-superfamily hydrolase subfamily IIB protein.;Transcript_evidence=AK067731 (DDBJ%2C Best hit),AK064990 (DDBJ%2C Best hit),AK103775 (DDBJ%2C Best hit);ORF_evidence=B2ZAS1 (UniProt);NIAS_FLcDNA=J013116P06,J013001D09,J033143P14;Oryzabase=9041;Expression=AK067731;TENOR=Os01t0749400-02;KEGG=Os01t0749400-02
Chr01	irgsp1_rep	five_prime_UTR	31377303	31377544	.	-	.	Parent=Os01t0749400-02
Chr01	irgsp1_rep	CDS	31375216	31377302	.	-	0	Parent=Os01t0749400-02
Chr01	irgsp1_rep	CDS	31374504	31374777	.	-	1	Parent=Os01t0749400-02
Chr01	irgsp1_rep	CDS	31373894	31374274	.	-	0	Parent=Os01t0749400-02
Chr01	irgsp1_rep	three_prime_UTR	31373447	31373893	.	-	.	Parent=Os01t0749400-02
Chr01	irgsp1_rep	mRNA	31394913	31400069	.	+	.	ID=Os01t0749900-01;Name=Os01t0749900-01;Locus_id=Os01g0749900;Note=Protein of unknown function DUF250 domain containing protein.;Transcript_evidence=AK103588 (DDBJ%2C Best hit);ORF_evidence=D8L9F9 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620),Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=J033133C05;Expression=AK103588;TENOR=Os01t0749900-01;KEGG=Os01t0749900-01
Chr01	irgsp1_rep	five_prime_UTR	31394913	31395110	.	+	.	Parent=Os01t0749900-01
Chr01	irgsp1_rep	CDS	31395111	31395541	.	+	0	Parent=Os01t0749900-01
Chr01	irgsp1_rep	CDS	31395649	31395821	.	+	1	Parent=Os01t0749900-01
Chr01	irgsp1_rep	CDS	31396594	31396679	.	+	2	Parent=Os01t0749900-01
Chr01	irgsp1_rep	CDS	31396783	31396832	.	+	0	Parent=Os01t0749900-01
Chr01	irgsp1_rep	CDS	31397340	31397407	.	+	1	Parent=Os01t0749900-01
Chr01	irgsp1_rep	CDS	31397675	31397775	.	+	2	Parent=Os01t0749900-01
Chr01	irgsp1_rep	CDS	31397956	31397968	.	+	0	Parent=Os01t0749900-01
Chr01	irgsp1_rep	CDS	31398232	31398416	.	+	2	Parent=Os01t0749900-01
Chr01	irgsp1_rep	CDS	31398626	31398712	.	+	0	Parent=Os01t0749900-01
Chr01	irgsp1_rep	CDS	31398817	31398911	.	+	0	Parent=Os01t0749900-01
Chr01	irgsp1_rep	CDS	31399251	31399377	.	+	1	Parent=Os01t0749900-01
Chr01	irgsp1_rep	three_prime_UTR	31399378	31399386	.	+	.	Parent=Os01t0749900-01
Chr01	irgsp1_rep	three_prime_UTR	31399484	31400069	.	+	.	Parent=Os01t0749900-01
Chr01	irgsp1_rep	mRNA	31400502	31400565	.	+	.	ID=Os01t0749950-00;Name=Os01t0749950-00;Locus_id=Os01g0749950;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0749950-00
Chr01	irgsp1_rep	exon	31400502	31400565	.	+	.	Parent=Os01t0749950-00
Chr01	irgsp1_rep	mRNA	31403796	31407150	.	+	.	ID=Os01t0750000-01;Name=Os01t0750000-01;Locus_id=Os01g0750000;Oryzabase Gene Symbol Synonym(s)=OsRab11D2;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab11D2;Note=Similar to ras-related protein RIC2.;Transcript_evidence=AK066450 (DDBJ%2C Best hit);ORF_evidence=D8L9F8 (UniProt);GO=Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225);NIAS_FLcDNA=J013061B07;Oryzabase=11103;Expression=AK066450;TENOR=Os01t0750000-01;KEGG=Os01t0750000-01
Chr01	irgsp1_rep	five_prime_UTR	31403796	31403908	.	+	.	Parent=Os01t0750000-01
Chr01	irgsp1_rep	CDS	31403909	31404232	.	+	0	Parent=Os01t0750000-01
Chr01	irgsp1_rep	three_prime_UTR	31404233	31407150	.	+	.	Parent=Os01t0750000-01
Chr01	irgsp1_rep	mRNA	31403837	31407261	.	+	.	ID=Os01t0750000-02;Name=Os01t0750000-02;Locus_id=Os01g0750000;Oryzabase Gene Symbol Synonym(s)=OsRab11D2;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab11D2;Note=Similar to Ras-related protein RIC2.;Transcript_evidence=AK060095 (DDBJ%2C Best hit);ORF_evidence=D8L9F8 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: intracellular protein transport (GO:0006886),Biological Process: nucleocytoplasmic transport (GO:0006913),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Cellular Component: membrane (GO:0016020),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Ran GTPase (IPR002041),Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C Ras type (IPR020849);NIAS_FLcDNA=006-307-F01;Oryzabase=11103;Expression=AK060095;TENOR=Os01t0750000-02;KEGG=Os01t0750000-02
Chr01	irgsp1_rep	five_prime_UTR	31403837	31403908	.	+	.	Parent=Os01t0750000-02
Chr01	irgsp1_rep	CDS	31403909	31404144	.	+	0	Parent=Os01t0750000-02
Chr01	irgsp1_rep	CDS	31406565	31406994	.	+	1	Parent=Os01t0750000-02
Chr01	irgsp1_rep	three_prime_UTR	31406995	31407261	.	+	.	Parent=Os01t0750000-02
Chr01	irgsp1_rep	mRNA	31404004	31406894	.	-	.	ID=Os01t0750050-00;Name=Os01t0750050-00;Locus_id=Os01g0750050;Note=Non-protein coding transcript.;Transcript_evidence=EU948966 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0750050-00
Chr01	irgsp1_rep	exon	31406484	31406894	.	-	.	Parent=Os01t0750050-00
Chr01	irgsp1_rep	exon	31404004	31404182	.	-	.	Parent=Os01t0750050-00
Chr01	irgsp1_rep	mRNA	31409132	31410736	.	-	.	ID=Os01t0750100-01;Name=Os01t0750100-01;Locus_id=Os01g0750100;CGSNL Gene Symbol=WRKY13;CGSNL Gene Name=WRKY GENE 13;Oryzabase Gene Symbol Synonym(s)=OsWRKY13;Oryzabase Gene Name Synonym(s)=Rice WRKY gene13;Note=Similar to WRKY transcription factor-like (WRKY transcription factor 13) (WRKY13).;Transcript_evidence=AK060018 (DDBJ%2C Best hit);ORF_evidence=A2WV31 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);NIAS_FLcDNA=006-302-G04;Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6524;Expression=AK060018;TENOR=Os01t0750100-01;KEGG=Os01t0750100-01
Chr01	irgsp1_rep	five_prime_UTR	31410471	31410736	.	-	.	Parent=Os01t0750100-01
Chr01	irgsp1_rep	CDS	31410268	31410470	.	-	0	Parent=Os01t0750100-01
Chr01	irgsp1_rep	CDS	31410023	31410172	.	-	1	Parent=Os01t0750100-01
Chr01	irgsp1_rep	CDS	31409772	31409873	.	-	1	Parent=Os01t0750100-01
Chr01	irgsp1_rep	CDS	31409688	31409703	.	-	1	Parent=Os01t0750100-01
Chr01	irgsp1_rep	three_prime_UTR	31409132	31409687	.	-	.	Parent=Os01t0750100-01
Chr01	irgsp1_rep	mRNA	31409395	31410706	.	-	.	ID=Os01t0750100-02;Name=Os01t0750100-02;Locus_id=Os01g0750100;CGSNL Gene Symbol=WRKY13;CGSNL Gene Name=WRKY GENE 13;Oryzabase Gene Symbol Synonym(s)=OsWRKY13;Oryzabase Gene Name Synonym(s)=Rice WRKY gene13;Note=Similar to WRKY13 transcription factor.;Transcript_evidence=AK099515 (DDBJ%2C Best hit);ORF_evidence=A2WV31 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);NIAS_FLcDNA=J013030B06;Oryzabase=6524;TENOR=Os01t0750100-02
Chr01	irgsp1_rep	five_prime_UTR	31410471	31410706	.	-	.	Parent=Os01t0750100-02
Chr01	irgsp1_rep	CDS	31410268	31410470	.	-	0	Parent=Os01t0750100-02
Chr01	irgsp1_rep	CDS	31410023	31410172	.	-	1	Parent=Os01t0750100-02
Chr01	irgsp1_rep	CDS	31409395	31409873	.	-	1	Parent=Os01t0750100-02
Chr01	irgsp1_rep	mRNA	31409175	31410645	.	-	.	ID=Os01t0750100-03;Name=Os01t0750100-03;Locus_id=Os01g0750100;RAP-DB Gene Symbol Synonym(s)=WRKY13%2C OsWRKY13;RAP-DB Gene Name Synonym(s)=WRKY GENE 13%2C Rice WRKY gene 13;CGSNL Gene Symbol=WRKY13;CGSNL Gene Name=WRKY GENE 13;Oryzabase Gene Symbol Synonym(s)=OsWRKY13;Oryzabase Gene Name Synonym(s)=Rice WRKY gene13;Note=Transcriptional repressor%2C Regulation of abiotic and biotic stress signaling pathway;Transcript_evidence=EF143611 (Minghua 63),AK067329;ORF_evidence=A2WV31;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);NIAS_FLcDNA=J013100D22;Manual Curation=January 10%2C 2014;Literature_PMID=24130197;Oryzabase=6524;Expression=AK067329;TENOR=Os01t0750100-03;KEGG=Os01t0750100-03
Chr01	irgsp1_rep	five_prime_UTR	31410471	31410645	.	-	.	Parent=Os01t0750100-03
Chr01	irgsp1_rep	CDS	31410268	31410470	.	-	0	Parent=Os01t0750100-03
Chr01	irgsp1_rep	CDS	31410023	31410172	.	-	1	Parent=Os01t0750100-03
Chr01	irgsp1_rep	CDS	31409276	31409873	.	-	1	Parent=Os01t0750100-03
Chr01	irgsp1_rep	three_prime_UTR	31409175	31409275	.	-	.	Parent=Os01t0750100-03
Chr01	irgsp1_rep	mRNA	31422946	31428670	.	+	.	ID=Os01t0750300-01;Name=Os01t0750300-01;Locus_id=Os01g0750300;RAP-DB Gene Symbol Synonym(s)=OsCESA4%2C BC7%2C Bc7(t);RAP-DB Gene Name Synonym(s)=cellulose synthase catalytic subunit 4%2C BRITTLE CULM 7;CGSNL Gene Symbol=BC7;CGSNL Gene Name=BRITTLE CULM 7;Oryzabase Gene Symbol Synonym(s)=OsCesA4%2C OsCESA4%2C CESA4%2C OS_CESA04%2C BC11%2C bc7t%2C Bc7(t)%2C bc-7%2C OsCesA 4%2C CesA4%2C FC17/CESA4%2C FC17%2C OsFC17;Oryzabase Gene Name Synonym(s)=Cellulose synthase A catalytic subunit 4 [UDP-forming]%2C Cellulose synthase A catalytic subunit 4%2C brittle culm 7%2C brittle culm11%2C fragile culm 17;Note=Cellulose synthase catalytic subunit%2C Secondary cell wall formation;Transcript_evidence=AK100475;ORF_evidence=Q5JN63;GO=Biological Process: cellulose biosynthetic process (GO:0030244),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760),Cellular Component: membrane (GO:0016020);InterPro=Nucleotide-diphospho-sugar transferases (IPR029044),Cellulose synthase (IPR005150);NIAS_FLcDNA=J023093O20;Manual Curation=November 13%2C 2018;Literature_PMID=30410573,18037139,12970476;Oryzabase=8926;Expression=AK100475;TENOR=Os01t0750300-01;KEGG=Os01t0750300-01 (EC:2.4.1.12)
Chr01	irgsp1_rep	five_prime_UTR	31422946	31423076	.	+	.	Parent=Os01t0750300-01
Chr01	irgsp1_rep	CDS	31423077	31423242	.	+	0	Parent=Os01t0750300-01
Chr01	irgsp1_rep	CDS	31423343	31423452	.	+	2	Parent=Os01t0750300-01
Chr01	irgsp1_rep	CDS	31423550	31423622	.	+	0	Parent=Os01t0750300-01
Chr01	irgsp1_rep	CDS	31423730	31423877	.	+	2	Parent=Os01t0750300-01
Chr01	irgsp1_rep	CDS	31424609	31424875	.	+	1	Parent=Os01t0750300-01
Chr01	irgsp1_rep	CDS	31424976	31425318	.	+	1	Parent=Os01t0750300-01
Chr01	irgsp1_rep	CDS	31425407	31425544	.	+	0	Parent=Os01t0750300-01
Chr01	irgsp1_rep	CDS	31426131	31426256	.	+	0	Parent=Os01t0750300-01
Chr01	irgsp1_rep	CDS	31426368	31426580	.	+	0	Parent=Os01t0750300-01
Chr01	irgsp1_rep	CDS	31426660	31426906	.	+	0	Parent=Os01t0750300-01
Chr01	irgsp1_rep	CDS	31426989	31427188	.	+	2	Parent=Os01t0750300-01
Chr01	irgsp1_rep	CDS	31427280	31427633	.	+	0	Parent=Os01t0750300-01
Chr01	irgsp1_rep	CDS	31427726	31428310	.	+	0	Parent=Os01t0750300-01
Chr01	irgsp1_rep	three_prime_UTR	31428311	31428670	.	+	.	Parent=Os01t0750300-01
Chr01	irgsp1_rep	mRNA	31426188	31428666	.	+	.	ID=Os01t0750300-02;Name=Os01t0750300-02;Locus_id=Os01g0750300;CGSNL Gene Symbol=BC7;CGSNL Gene Name=BRITTLE CULM 7;Oryzabase Gene Symbol Synonym(s)=OsCesA4%2C OsCESA4%2C CESA4%2C OS_CESA04%2C BC11%2C bc7t%2C Bc7(t)%2C bc-7%2C OsCesA 4%2C CesA4%2C FC17/CESA4%2C FC17%2C OsFC17;Oryzabase Gene Name Synonym(s)=Cellulose synthase A catalytic subunit 4 [UDP-forming]%2C Cellulose synthase A catalytic subunit 4%2C brittle culm 7%2C brittle culm11%2C fragile culm 17;Note=Similar to cDNA clone:J023093O20%2C full insert sequence.;Transcript_evidence=AK100374 (DDBJ%2C Best hit);ORF_evidence=B7EQH8 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150);NIAS_FLcDNA=J023084J22;Oryzabase=8926;TENOR=Os01t0750300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	31426188	31426244	.	+	.	Parent=Os01t0750300-02
Chr01	irgsp1_rep	CDS	31426245	31426256	.	+	0	Parent=Os01t0750300-02
Chr01	irgsp1_rep	CDS	31426368	31426580	.	+	0	Parent=Os01t0750300-02
Chr01	irgsp1_rep	CDS	31426660	31426906	.	+	0	Parent=Os01t0750300-02
Chr01	irgsp1_rep	CDS	31426989	31427188	.	+	2	Parent=Os01t0750300-02
Chr01	irgsp1_rep	CDS	31427280	31427633	.	+	0	Parent=Os01t0750300-02
Chr01	irgsp1_rep	CDS	31427726	31428310	.	+	0	Parent=Os01t0750300-02
Chr01	irgsp1_rep	three_prime_UTR	31428311	31428666	.	+	.	Parent=Os01t0750300-02
Chr01	irgsp1_rep	mRNA	31426831	31428600	.	+	.	ID=Os01t0750300-03;Name=Os01t0750300-03;Locus_id=Os01g0750300;CGSNL Gene Symbol=BC7;CGSNL Gene Name=BRITTLE CULM 7;Oryzabase Gene Symbol Synonym(s)=OsCesA4%2C OsCESA4%2C CESA4%2C OS_CESA04%2C BC11%2C bc7t%2C Bc7(t)%2C bc-7%2C OsCesA 4%2C CesA4%2C FC17/CESA4%2C FC17%2C OsFC17;Oryzabase Gene Name Synonym(s)=Cellulose synthase A catalytic subunit 4 [UDP-forming]%2C Cellulose synthase A catalytic subunit 4%2C brittle culm 7%2C brittle culm11%2C fragile culm 17;Note=Similar to cDNA clone:J023093O20%2C full insert sequence.;Transcript_evidence=AK105078 (DDBJ%2C Best hit);ORF_evidence=B7EQH8 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150);NIAS_FLcDNA=001-045-G07;Oryzabase=8926;Expression=AK105078;TENOR=Os01t0750300-03;KEGG=Os01t0750300-03 (EC:2.4.1.12)
Chr01	irgsp1_rep	CDS	31426831	31426906	.	+	0	Parent=Os01t0750300-03
Chr01	irgsp1_rep	CDS	31426989	31427188	.	+	2	Parent=Os01t0750300-03
Chr01	irgsp1_rep	CDS	31427280	31427633	.	+	0	Parent=Os01t0750300-03
Chr01	irgsp1_rep	CDS	31427726	31428310	.	+	0	Parent=Os01t0750300-03
Chr01	irgsp1_rep	three_prime_UTR	31428311	31428600	.	+	.	Parent=Os01t0750300-03
Chr01	irgsp1_rep	mRNA	31431931	31432677	.	-	.	ID=Os01t0750400-00;Name=Os01t0750400-00;Locus_id=Os01g0750400;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5JN62 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);TENOR=Os01t0750400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	31431931	31432677	.	-	0	Parent=Os01t0750400-00
Chr01	irgsp1_rep	mRNA	31453335	31457548	.	-	.	ID=Os01t0750500-01;Name=Os01t0750500-01;Locus_id=Os01g0750500;Note=Protein of unknown function DUF814 domain containing protein.;Transcript_evidence=AK067516 (DDBJ%2C Best hit),AK104228 (DDBJ%2C Best hit),AK104728 (DDBJ%2C Best hit);ORF_evidence=B4FL66 (UniProt);NIAS_FLcDNA=J013112J21,006-307-A10,001-038-C01;Expression=AK104728;TENOR=Os01t0750500-01;KEGG=Os01t0750500-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	31457316	31457548	.	-	.	Parent=Os01t0750500-01
Chr01	irgsp1_rep	CDS	31457203	31457315	.	-	0	Parent=Os01t0750500-01
Chr01	irgsp1_rep	CDS	31456360	31456487	.	-	1	Parent=Os01t0750500-01
Chr01	irgsp1_rep	CDS	31455651	31455754	.	-	2	Parent=Os01t0750500-01
Chr01	irgsp1_rep	CDS	31453925	31454012	.	-	0	Parent=Os01t0750500-01
Chr01	irgsp1_rep	CDS	31453602	31453816	.	-	2	Parent=Os01t0750500-01
Chr01	irgsp1_rep	three_prime_UTR	31453335	31453601	.	-	.	Parent=Os01t0750500-01
Chr01	irgsp1_rep	mRNA	31473999	31477461	.	-	.	ID=Os01t0750600-01;Name=Os01t0750600-01;Locus_id=Os01g0750600;Oryzabase Gene Name Synonym(s)=Extensin family protein;Note=Protein kinase-like domain containing protein.;Transcript_evidence=AK102832 (DDBJ%2C Best hit),AK064397 (DDBJ%2C Best hit);ORF_evidence=Q3LFP8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J033109I17,002-108-G09;Oryzabase=21938;Expression=AK102832;TENOR=Os01t0750600-01;KEGG=Os01t0750600-01
Chr01	irgsp1_rep	five_prime_UTR	31477414	31477461	.	-	.	Parent=Os01t0750600-01
Chr01	irgsp1_rep	CDS	31476738	31477413	.	-	0	Parent=Os01t0750600-01
Chr01	irgsp1_rep	CDS	31475880	31476344	.	-	2	Parent=Os01t0750600-01
Chr01	irgsp1_rep	CDS	31475707	31475793	.	-	2	Parent=Os01t0750600-01
Chr01	irgsp1_rep	CDS	31475435	31475505	.	-	2	Parent=Os01t0750600-01
Chr01	irgsp1_rep	CDS	31475278	31475354	.	-	0	Parent=Os01t0750600-01
Chr01	irgsp1_rep	CDS	31475010	31475157	.	-	1	Parent=Os01t0750600-01
Chr01	irgsp1_rep	CDS	31474759	31474920	.	-	0	Parent=Os01t0750600-01
Chr01	irgsp1_rep	CDS	31474272	31474634	.	-	0	Parent=Os01t0750600-01
Chr01	irgsp1_rep	three_prime_UTR	31473999	31474271	.	-	.	Parent=Os01t0750600-01
Chr01	irgsp1_rep	mRNA	31474278	31476174	.	+	.	ID=Os01t0750666-00;Name=Os01t0750666-00;Locus_id=Os01g0750666;Note=Hypothetical protein.;Transcript_evidence=tplb0031a15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0750666-00
Chr01	irgsp1_rep	five_prime_UTR	31474278	31474278	.	+	.	Parent=Os01t0750666-00
Chr01	irgsp1_rep	CDS	31474279	31474622	.	+	0	Parent=Os01t0750666-00
Chr01	irgsp1_rep	CDS	31474746	31474922	.	+	1	Parent=Os01t0750666-00
Chr01	irgsp1_rep	CDS	31475015	31475099	.	+	1	Parent=Os01t0750666-00
Chr01	irgsp1_rep	three_prime_UTR	31475100	31475117	.	+	.	Parent=Os01t0750666-00
Chr01	irgsp1_rep	three_prime_UTR	31475233	31475366	.	+	.	Parent=Os01t0750666-00
Chr01	irgsp1_rep	three_prime_UTR	31475448	31475514	.	+	.	Parent=Os01t0750666-00
Chr01	irgsp1_rep	three_prime_UTR	31475800	31476174	.	+	.	Parent=Os01t0750666-00
Chr01	irgsp1_rep	mRNA	31487114	31490168	.	-	.	ID=Os01t0750800-02;Name=Os01t0750800-02;Locus_id=Os01g0750800;Note=Conserved hypothetical protein.;Transcript_evidence=AK119318 (DDBJ%2C Best hit),AK063860 (DDBJ%2C Best hit),AK121525 (DDBJ%2C Best hit);ORF_evidence=B8A9G1 (UniProt);NIAS_FLcDNA=001-130-H07,001-122-D10,J033029L24;Expression=AK119318;TENOR=Os01t0750800-02;KEGG=Os01t0750800-02
Chr01	irgsp1_rep	five_prime_UTR	31490043	31490168	.	-	.	Parent=Os01t0750800-02
Chr01	irgsp1_rep	CDS	31489875	31490042	.	-	0	Parent=Os01t0750800-02
Chr01	irgsp1_rep	CDS	31489722	31489769	.	-	0	Parent=Os01t0750800-02
Chr01	irgsp1_rep	three_prime_UTR	31487114	31489721	.	-	.	Parent=Os01t0750800-02
Chr01	irgsp1_rep	mRNA	31492428	31492979	.	+	.	ID=Os01t0750900-01;Name=Os01t0750900-01;Locus_id=Os01g0750900;Note=Conserved hypothetical protein.;Transcript_evidence=AK111087 (DDBJ%2C Best hit);ORF_evidence=B8A9G2 (UniProt);NIAS_FLcDNA=002-175-F10;Expression=AK111087;TENOR=Os01t0750900-01;KEGG=Os01t0750900-01
Chr01	irgsp1_rep	five_prime_UTR	31492428	31492451	.	+	.	Parent=Os01t0750900-01
Chr01	irgsp1_rep	CDS	31492452	31492643	.	+	0	Parent=Os01t0750900-01
Chr01	irgsp1_rep	three_prime_UTR	31492644	31492979	.	+	.	Parent=Os01t0750900-01
Chr01	irgsp1_rep	mRNA	31511536	31519595	.	+	.	ID=Os01t0751300-01;Name=Os01t0751300-01;Locus_id=Os01g0751300;Note=Domain of unknown function DUF1084 domain containing protein.;Transcript_evidence=AK068036 (DDBJ%2C Best hit);ORF_evidence=B8A9G4 (UniProt);InterPro=Domain of unknown function DUF1084 (IPR009457);NIAS_FLcDNA=J013129G23;Expression=AK068036;TENOR=Os01t0751300-01;KEGG=Os01t0751300-01
Chr01	irgsp1_rep	five_prime_UTR	31511536	31511793	.	+	.	Parent=Os01t0751300-01
Chr01	irgsp1_rep	CDS	31511794	31511925	.	+	0	Parent=Os01t0751300-01
Chr01	irgsp1_rep	CDS	31512411	31512461	.	+	0	Parent=Os01t0751300-01
Chr01	irgsp1_rep	CDS	31513324	31513357	.	+	0	Parent=Os01t0751300-01
Chr01	irgsp1_rep	CDS	31514030	31514116	.	+	2	Parent=Os01t0751300-01
Chr01	irgsp1_rep	CDS	31514246	31514297	.	+	2	Parent=Os01t0751300-01
Chr01	irgsp1_rep	CDS	31515692	31515860	.	+	1	Parent=Os01t0751300-01
Chr01	irgsp1_rep	CDS	31516053	31516148	.	+	0	Parent=Os01t0751300-01
Chr01	irgsp1_rep	CDS	31516779	31516839	.	+	0	Parent=Os01t0751300-01
Chr01	irgsp1_rep	CDS	31517129	31517193	.	+	2	Parent=Os01t0751300-01
Chr01	irgsp1_rep	CDS	31517846	31517920	.	+	0	Parent=Os01t0751300-01
Chr01	irgsp1_rep	CDS	31518018	31518093	.	+	0	Parent=Os01t0751300-01
Chr01	irgsp1_rep	CDS	31518882	31519045	.	+	2	Parent=Os01t0751300-01
Chr01	irgsp1_rep	CDS	31519140	31519163	.	+	0	Parent=Os01t0751300-01
Chr01	irgsp1_rep	three_prime_UTR	31519164	31519595	.	+	.	Parent=Os01t0751300-01
Chr01	irgsp1_rep	mRNA	31521222	31522021	.	+	.	ID=Os01t0751400-00;Name=Os01t0751400-00;Locus_id=Os01g0751400;Note=Conserved hypothetical protein.;Transcript_evidence=BT067825 (DDBJ);ORF_evidence=NP_001044259.1 (RefSeq);TENOR=Os01t0751400-00;KEGG=Os01t0751400-00
Chr01	irgsp1_rep	CDS	31521222	31521674	.	+	0	Parent=Os01t0751400-00
Chr01	irgsp1_rep	three_prime_UTR	31521675	31522021	.	+	.	Parent=Os01t0751400-00
Chr01	irgsp1_rep	mRNA	31524164	31527114	.	-	.	ID=Os01t0751600-01;Name=Os01t0751600-01;Locus_id=Os01g0751600;RAP-DB Gene Symbol Synonym(s)=THIS1%2C This1;CGSNL Gene Symbol=THIS1;CGSNL Gene Name=HIGH TILLERING%2C REDUCED HEIGHT%2C AND INFERTILE SPIKELETS 1;Oryzabase Gene Name Synonym(s)="high-tillering%2C reduced height with infertile spikelet 1"%2C "high tillering%2C reduced height%2C and infertile spikelets 1";Note=Class III lipase%2C Regulation of tillering%2C plant height%2C and spikelet fertility;Transcript_evidence=AK108569;ORF_evidence=Q943F9;GO=Biological Process: lipid metabolic process (GO:0006629);InterPro=Alpha/Beta hydrolase fold (IPR029058),Fungal lipase-like domain (IPR002921);NIAS_FLcDNA=002-145-D03;Manual Curation=December 19%2C 2016;Literature_PMID=24085578;Oryzabase=22376;Expression=AK108569;TENOR=Os01t0751600-01;KEGG=Os01t0751600-01
Chr01	irgsp1_rep	five_prime_UTR	31526968	31527114	.	-	.	Parent=Os01t0751600-01
Chr01	irgsp1_rep	CDS	31526741	31526967	.	-	0	Parent=Os01t0751600-01
Chr01	irgsp1_rep	CDS	31524334	31525342	.	-	1	Parent=Os01t0751600-01
Chr01	irgsp1_rep	three_prime_UTR	31524164	31524333	.	-	.	Parent=Os01t0751600-01
Chr01	irgsp1_rep	mRNA	31550662	31552990	.	+	.	ID=Os01t0752100-01;Name=Os01t0752100-01;Locus_id=Os01g0752100;Oryzabase Gene Symbol Synonym(s)=OsFbox037%2C OsFbox37%2C Os_F0332;Oryzabase Gene Name Synonym(s)=F-box protein 37;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK063352 (DDBJ%2C Best hit);ORF_evidence=B8A9H1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),FBD (IPR013596),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=001-114-C02;Oryzabase=16837;Expression=AK063352;TENOR=Os01t0752100-01;KEGG=Os01t0752100-01
Chr01	irgsp1_rep	five_prime_UTR	31550662	31550746	.	+	.	Parent=Os01t0752100-01
Chr01	irgsp1_rep	CDS	31550747	31551598	.	+	0	Parent=Os01t0752100-01
Chr01	irgsp1_rep	CDS	31552181	31552339	.	+	0	Parent=Os01t0752100-01
Chr01	irgsp1_rep	CDS	31552447	31552770	.	+	0	Parent=Os01t0752100-01
Chr01	irgsp1_rep	three_prime_UTR	31552771	31552990	.	+	.	Parent=Os01t0752100-01
Chr01	irgsp1_rep	mRNA	31552902	31556837	.	-	.	ID=Os01t0752200-01;Name=Os01t0752200-01;Locus_id=Os01g0752200;RAP-DB Gene Symbol Synonym(s)=NOG1;RAP-DB Gene Name Synonym(s)=NUMBER OF GRAINS 1;CGSNL Gene Symbol=NOG1;CGSNL Gene Name=NUMBER OF GRAINS 1;Note=Enoyl-CoA hydratase/isomerase%2C Regulation of grain number and the yield;Transcript_evidence=AK069590;ORF_evidence=Q5JMX9;GO=Molecular Function: 3-hydroxyisobutyryl-CoA hydrolase activity (GO:0003860);InterPro=ClpP/crotonase-like domain superfamily (IPR029045),Enoyl-CoA hydratase/isomerase%2C  HIBYL-CoA-H type (IPR032259);NIAS_FLcDNA=J023019I11;Manual Curation=February 21%2C 2018;Literature_PMID=29133783;Oryzabase=22160;Expression=AK069590;TENOR=Os01t0752200-01;KEGG=Os01t0752200-01 (EC:3.1.2.4);Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737)
Chr01	irgsp1_rep	five_prime_UTR	31556680	31556837	.	-	.	Parent=Os01t0752200-01
Chr01	irgsp1_rep	CDS	31556635	31556679	.	-	0	Parent=Os01t0752200-01
Chr01	irgsp1_rep	CDS	31556454	31556537	.	-	0	Parent=Os01t0752200-01
Chr01	irgsp1_rep	CDS	31556288	31556356	.	-	0	Parent=Os01t0752200-01
Chr01	irgsp1_rep	CDS	31555777	31555837	.	-	0	Parent=Os01t0752200-01
Chr01	irgsp1_rep	CDS	31555562	31555635	.	-	2	Parent=Os01t0752200-01
Chr01	irgsp1_rep	CDS	31555384	31555467	.	-	0	Parent=Os01t0752200-01
Chr01	irgsp1_rep	CDS	31554991	31555075	.	-	0	Parent=Os01t0752200-01
Chr01	irgsp1_rep	CDS	31554705	31554790	.	-	2	Parent=Os01t0752200-01
Chr01	irgsp1_rep	CDS	31554428	31554549	.	-	0	Parent=Os01t0752200-01
Chr01	irgsp1_rep	CDS	31554264	31554324	.	-	1	Parent=Os01t0752200-01
Chr01	irgsp1_rep	CDS	31553890	31553988	.	-	0	Parent=Os01t0752200-01
Chr01	irgsp1_rep	CDS	31553537	31553638	.	-	0	Parent=Os01t0752200-01
Chr01	irgsp1_rep	CDS	31553395	31553436	.	-	0	Parent=Os01t0752200-01
Chr01	irgsp1_rep	CDS	31553210	31553316	.	-	0	Parent=Os01t0752200-01
Chr01	irgsp1_rep	CDS	31553055	31553103	.	-	1	Parent=Os01t0752200-01
Chr01	irgsp1_rep	three_prime_UTR	31552902	31553054	.	-	.	Parent=Os01t0752200-01
Chr01	irgsp1_rep	mRNA	31559233	31560836	.	-	.	ID=Os01t0752300-01;Name=Os01t0752300-01;Locus_id=Os01g0752300;Oryzabase Gene Name Synonym(s)=Ribosomal protein L18a;Note=Similar to 60S ribosomal protein L18a-1.;Transcript_evidence=AK121755 (DDBJ%2C Best hit);ORF_evidence=Q943F3 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L18a (IPR021138),Ribosomal protein L18a/LX (IPR023573);NIAS_FLcDNA=J033088C04;Oryzabase=17664;Expression=AK121755;TENOR=Os01t0752300-01;KEGG=Os01t0752300-01
Chr01	irgsp1_rep	five_prime_UTR	31560721	31560836	.	-	.	Parent=Os01t0752300-01
Chr01	irgsp1_rep	CDS	31560706	31560720	.	-	0	Parent=Os01t0752300-01
Chr01	irgsp1_rep	CDS	31560485	31560600	.	-	0	Parent=Os01t0752300-01
Chr01	irgsp1_rep	CDS	31560325	31560388	.	-	1	Parent=Os01t0752300-01
Chr01	irgsp1_rep	CDS	31559489	31559830	.	-	0	Parent=Os01t0752300-01
Chr01	irgsp1_rep	three_prime_UTR	31559233	31559488	.	-	.	Parent=Os01t0752300-01
Chr01	irgsp1_rep	mRNA	31559357	31560601	.	+	.	ID=Os01t0752350-00;Name=Os01t0752350-00;Locus_id=Os01g0752350;Note=Hypothetical conserved gene.;Transcript_evidence=BT016634 (DDBJ);ORF_evidence=C4J224 (UniProt);TENOR=Os01t0752350-00;KEGG=Os01t0752350-00
Chr01	irgsp1_rep	five_prime_UTR	31559357	31559587	.	+	.	Parent=Os01t0752350-00
Chr01	irgsp1_rep	CDS	31559588	31559810	.	+	0	Parent=Os01t0752350-00
Chr01	irgsp1_rep	CDS	31560306	31560319	.	+	2	Parent=Os01t0752350-00
Chr01	irgsp1_rep	three_prime_UTR	31560320	31560384	.	+	.	Parent=Os01t0752350-00
Chr01	irgsp1_rep	three_prime_UTR	31560467	31560601	.	+	.	Parent=Os01t0752350-00
Chr01	irgsp1_rep	mRNA	31561394	31564137	.	-	.	ID=Os01t0752400-00;Name=Os01t0752400-00;Locus_id=Os01g0752400;Note=Hypothetical conserved gene.;Transcript_evidence=CU405812 (DDBJ%2C Best hit);ORF_evidence=NP_001044265.1 (RefSeq);TENOR=Os01t0752400-00;KEGG=Os01t0752400-00
Chr01	irgsp1_rep	five_prime_UTR	31564130	31564137	.	-	.	Parent=Os01t0752400-00
Chr01	irgsp1_rep	CDS	31564006	31564129	.	-	0	Parent=Os01t0752400-00
Chr01	irgsp1_rep	CDS	31563813	31563926	.	-	2	Parent=Os01t0752400-00
Chr01	irgsp1_rep	CDS	31562690	31562908	.	-	2	Parent=Os01t0752400-00
Chr01	irgsp1_rep	CDS	31562492	31562599	.	-	2	Parent=Os01t0752400-00
Chr01	irgsp1_rep	CDS	31561820	31561824	.	-	2	Parent=Os01t0752400-00
Chr01	irgsp1_rep	three_prime_UTR	31561394	31561819	.	-	.	Parent=Os01t0752400-00
Chr01	irgsp1_rep	mRNA	31567786	31568709	.	+	.	ID=Os01t0752500-01;Name=Os01t0752500-01;Locus_id=Os01g0752500;RAP-DB Gene Symbol Synonym(s)=ERF92%2C OsERF922;RAP-DB Gene Name Synonym(s)=ETHYLENE RESPONSE FACTOR 92%2C ethylene response factor 922;CGSNL Gene Symbol=ERF92;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 92;Oryzabase Gene Symbol Synonym(s)=OsERF#092%2C OsERF092%2C OsERF92%2C ERF922%2C OsERF922%2C AP2/EREBP#078%2C AP2/EREBP78;Oryzabase Gene Name Synonym(s)=ethylene response factor 922%2C ETHYLENE-RESPONSIVE ELEMENT-BINDING FACTOR 922%2C ethylene response factor 92%2C APETALA2/ethylene-responsive element binding protein 78%2C Ethylene responsive factor 922;Note=APETELA2/ethylene response factor (AP2/ERF) type transcription factor%2C Negative regulation of disease resistance%2C Negative regulation of salt tolerance;Transcript_evidence=Inferred from literature;ORF_evidence=Q5JMX7;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700);InterPro=DNA-binding domain (IPR016177),AP2/ERF domain (IPR001471);Manual Curation=June 19%2C 2017;Literature_PMID=27116122,22442415;Oryzabase=10409;TENOR=Os01t0752500-00;KEGG=Os01t0752500-00;Subcellular location=nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	31567786	31567890	.	+	.	Parent=Os01t0752500-01
Chr01	irgsp1_rep	CDS	31567891	31568529	.	+	0	Parent=Os01t0752500-01
Chr01	irgsp1_rep	three_prime_UTR	31568530	31568709	.	+	.	Parent=Os01t0752500-01
Chr01	irgsp1_rep	mRNA	31569011	31575611	.	-	.	ID=Os01t0752600-01;Name=Os01t0752600-01;Locus_id=Os01g0752600;Note=Glycosyl transferase%2C family 19 protein.;Transcript_evidence=AK100905 (DDBJ%2C Best hit);ORF_evidence=NP_178535.2 (RefSeq);GO=Biological Process: lipid A biosynthetic process (GO:0009245),Molecular Function: lipid-A-disaccharide synthase activity (GO:0008915);InterPro=Glycosyl transferase%2C family 19 (IPR003835);NIAS_FLcDNA=J023132C04;Expression=AK100905;TENOR=Os01t0752600-01;KEGG=Os01t0752600-01 (EC:2.4.1.182)
Chr01	irgsp1_rep	five_prime_UTR	31575473	31575611	.	-	.	Parent=Os01t0752600-01
Chr01	irgsp1_rep	CDS	31575231	31575472	.	-	0	Parent=Os01t0752600-01
Chr01	irgsp1_rep	CDS	31573982	31574081	.	-	1	Parent=Os01t0752600-01
Chr01	irgsp1_rep	CDS	31573783	31573888	.	-	0	Parent=Os01t0752600-01
Chr01	irgsp1_rep	CDS	31573481	31573698	.	-	2	Parent=Os01t0752600-01
Chr01	irgsp1_rep	CDS	31572614	31572692	.	-	0	Parent=Os01t0752600-01
Chr01	irgsp1_rep	CDS	31571492	31571730	.	-	2	Parent=Os01t0752600-01
Chr01	irgsp1_rep	CDS	31570463	31570689	.	-	0	Parent=Os01t0752600-01
Chr01	irgsp1_rep	CDS	31569988	31570204	.	-	1	Parent=Os01t0752600-01
Chr01	irgsp1_rep	three_prime_UTR	31569011	31569987	.	-	.	Parent=Os01t0752600-01
Chr01	irgsp1_rep	mRNA	31575708	31583476	.	+	.	ID=Os01t0752700-01;Name=Os01t0752700-01;Locus_id=Os01g0752700;Note=Similar to GTP-binding protein.;Transcript_evidence=AK068544 (DDBJ%2C Best hit);ORF_evidence=XP_002881151.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Translation elongation factor EFG/EF2%2C C-terminal (IPR000640),Protein synthesis factor%2C GTP-binding (IPR000795),Translation elongation factor EFTu/EF1A%2C domain 2 (IPR004161),Small GTP-binding protein domain (IPR005225),GTP-binding protein TypA (IPR006298),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Elongation factor G/III/V (IPR009022);NIAS_FLcDNA=J013155A22;Expression=AK068544;TENOR=Os01t0752700-01;KEGG=Os01t0752700-01
Chr01	irgsp1_rep	five_prime_UTR	31575708	31575758	.	+	.	Parent=Os01t0752700-01
Chr01	irgsp1_rep	CDS	31575759	31576100	.	+	0	Parent=Os01t0752700-01
Chr01	irgsp1_rep	CDS	31576574	31576648	.	+	0	Parent=Os01t0752700-01
Chr01	irgsp1_rep	CDS	31576751	31576901	.	+	0	Parent=Os01t0752700-01
Chr01	irgsp1_rep	CDS	31577458	31577526	.	+	2	Parent=Os01t0752700-01
Chr01	irgsp1_rep	CDS	31577606	31577778	.	+	2	Parent=Os01t0752700-01
Chr01	irgsp1_rep	CDS	31578216	31578353	.	+	0	Parent=Os01t0752700-01
Chr01	irgsp1_rep	CDS	31578489	31578614	.	+	0	Parent=Os01t0752700-01
Chr01	irgsp1_rep	CDS	31578693	31578791	.	+	0	Parent=Os01t0752700-01
Chr01	irgsp1_rep	CDS	31579917	31580040	.	+	0	Parent=Os01t0752700-01
Chr01	irgsp1_rep	CDS	31580207	31580270	.	+	2	Parent=Os01t0752700-01
Chr01	irgsp1_rep	CDS	31580540	31580594	.	+	1	Parent=Os01t0752700-01
Chr01	irgsp1_rep	CDS	31580693	31580817	.	+	0	Parent=Os01t0752700-01
Chr01	irgsp1_rep	CDS	31580970	31581043	.	+	1	Parent=Os01t0752700-01
Chr01	irgsp1_rep	CDS	31581178	31581227	.	+	2	Parent=Os01t0752700-01
Chr01	irgsp1_rep	CDS	31581464	31581550	.	+	0	Parent=Os01t0752700-01
Chr01	irgsp1_rep	CDS	31581639	31581689	.	+	0	Parent=Os01t0752700-01
Chr01	irgsp1_rep	CDS	31581767	31581850	.	+	0	Parent=Os01t0752700-01
Chr01	irgsp1_rep	CDS	31582142	31582190	.	+	0	Parent=Os01t0752700-01
Chr01	irgsp1_rep	CDS	31582921	31583006	.	+	2	Parent=Os01t0752700-01
Chr01	irgsp1_rep	three_prime_UTR	31583007	31583476	.	+	.	Parent=Os01t0752700-01
Chr01	irgsp1_rep	mRNA	31585553	31588972	.	-	.	ID=Os01t0752800-01;Name=Os01t0752800-01;Locus_id=Os01g0752800;Note=Similar to HASP protein-like protein (Fragment).;Transcript_evidence=AK103612 (DDBJ%2C Best hit);ORF_evidence=NP_001149334.1 (RefSeq);InterPro=Casein kinase substrate%2C phosphoprotein PP28 (IPR019380);NIAS_FLcDNA=J033133K04;Oryzabase=21742;Expression=AK103612;TENOR=Os01t0752800-01;KEGG=Os01t0752800-01
Chr01	irgsp1_rep	five_prime_UTR	31588851	31588972	.	-	.	Parent=Os01t0752800-01
Chr01	irgsp1_rep	CDS	31588784	31588850	.	-	0	Parent=Os01t0752800-01
Chr01	irgsp1_rep	CDS	31588009	31588046	.	-	2	Parent=Os01t0752800-01
Chr01	irgsp1_rep	CDS	31587496	31587585	.	-	0	Parent=Os01t0752800-01
Chr01	irgsp1_rep	CDS	31587328	31587411	.	-	0	Parent=Os01t0752800-01
Chr01	irgsp1_rep	CDS	31587138	31587172	.	-	0	Parent=Os01t0752800-01
Chr01	irgsp1_rep	CDS	31586964	31587049	.	-	1	Parent=Os01t0752800-01
Chr01	irgsp1_rep	CDS	31586144	31586209	.	-	2	Parent=Os01t0752800-01
Chr01	irgsp1_rep	CDS	31585804	31585838	.	-	2	Parent=Os01t0752800-01
Chr01	irgsp1_rep	three_prime_UTR	31585553	31585803	.	-	.	Parent=Os01t0752800-01
Chr01	irgsp1_rep	mRNA	31585518	31585744	.	-	.	ID=Os01t0752800-02;Name=Os01t0752800-02;Locus_id=Os01g0752800;Note=Non-protein coding transcript.;Transcript_evidence=AK105380 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-121-A06;Oryzabase=21742;TENOR=Os01t0752800-02
Chr01	irgsp1_rep	exon	31585518	31585744	.	-	.	Parent=Os01t0752800-02
Chr01	irgsp1_rep	mRNA	31592127	31596970	.	-	.	ID=Os01t0753000-01;Name=Os01t0753000-01;Locus_id=Os01g0753000;Oryzabase Gene Symbol Synonym(s)=EIP8%2C OsVOZ1%2C VOZ1;Oryzabase Gene Name Synonym(s)=EBR1-interacting protein 8%2C vascular one zinc-finger 1;Note=Similar to VOZ transcription factor.;Transcript_evidence=AK241765 (DDBJ%2C Best hit);ORF_evidence=B4FR91 (UniProt);NIAS_FLcDNA=J065205E23;Oryzabase=21995;TENOR=Os01t0753000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	31596841	31596970	.	-	.	Parent=Os01t0753000-01
Chr01	irgsp1_rep	five_prime_UTR	31596757	31596770	.	-	.	Parent=Os01t0753000-01
Chr01	irgsp1_rep	CDS	31596619	31596756	.	-	0	Parent=Os01t0753000-01
Chr01	irgsp1_rep	CDS	31596200	31596520	.	-	0	Parent=Os01t0753000-01
Chr01	irgsp1_rep	CDS	31593287	31593812	.	-	0	Parent=Os01t0753000-01
Chr01	irgsp1_rep	CDS	31592582	31593201	.	-	2	Parent=Os01t0753000-01
Chr01	irgsp1_rep	three_prime_UTR	31592127	31592581	.	-	.	Parent=Os01t0753000-01
Chr01	irgsp1_rep	mRNA	31599199	31604576	.	+	.	ID=Os01t0753100-01;Name=Os01t0753100-01;Locus_id=Os01g0753100;Note=Alcohol dehydrogenase superfamily%2C zinc-containing protein.;Transcript_evidence=AK067136 (DDBJ%2C Best hit);ORF_evidence=NP_001149467.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040),Polyketide synthase%2C enoylreductase (IPR020843);NIAS_FLcDNA=J013095P17;Expression=AK067136;TENOR=Os01t0753100-01;KEGG=Os01t0753100-01
Chr01	irgsp1_rep	five_prime_UTR	31599199	31599303	.	+	.	Parent=Os01t0753100-01
Chr01	irgsp1_rep	CDS	31599304	31599528	.	+	0	Parent=Os01t0753100-01
Chr01	irgsp1_rep	CDS	31600056	31600283	.	+	0	Parent=Os01t0753100-01
Chr01	irgsp1_rep	CDS	31600723	31600796	.	+	0	Parent=Os01t0753100-01
Chr01	irgsp1_rep	CDS	31601337	31601496	.	+	1	Parent=Os01t0753100-01
Chr01	irgsp1_rep	CDS	31602721	31602840	.	+	0	Parent=Os01t0753100-01
Chr01	irgsp1_rep	CDS	31602927	31603035	.	+	0	Parent=Os01t0753100-01
Chr01	irgsp1_rep	CDS	31604189	31604370	.	+	2	Parent=Os01t0753100-01
Chr01	irgsp1_rep	three_prime_UTR	31604371	31604576	.	+	.	Parent=Os01t0753100-01
Chr01	irgsp1_rep	mRNA	31602719	31604571	.	+	.	ID=Os01t0753100-02;Name=Os01t0753100-02;Locus_id=Os01g0753100;Note=Similar to reticulon-4-interacting protein 1.;Transcript_evidence=AK061904 (DDBJ%2C Best hit);ORF_evidence=NP_001149467.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-041-H08;Expression=AK061904;TENOR=Os01t0753100-02;KEGG=Os01t0753100-02
Chr01	irgsp1_rep	five_prime_UTR	31602719	31602720	.	+	.	Parent=Os01t0753100-02
Chr01	irgsp1_rep	CDS	31602721	31602840	.	+	0	Parent=Os01t0753100-02
Chr01	irgsp1_rep	CDS	31602927	31603035	.	+	0	Parent=Os01t0753100-02
Chr01	irgsp1_rep	CDS	31604189	31604370	.	+	2	Parent=Os01t0753100-02
Chr01	irgsp1_rep	three_prime_UTR	31604371	31604571	.	+	.	Parent=Os01t0753100-02
Chr01	irgsp1_rep	mRNA	31605287	31607374	.	-	.	ID=Os01t0753150-00;Name=Os01t0753150-00;Locus_id=Os01g0753150;Note=Optic atrophy 3-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2ZXX1 (UniProt);InterPro=Optic atrophy 3-like (IPR010754);TENOR=Os01t0753150-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	31607246	31607374	.	-	0	Parent=Os01t0753150-00
Chr01	irgsp1_rep	CDS	31605867	31606019	.	-	0	Parent=Os01t0753150-00
Chr01	irgsp1_rep	CDS	31605590	31605676	.	-	0	Parent=Os01t0753150-00
Chr01	irgsp1_rep	CDS	31605287	31605493	.	-	0	Parent=Os01t0753150-00
Chr01	irgsp1_rep	mRNA	31605596	31607374	.	+	.	ID=Os01t0753175-00;Name=Os01t0753175-00;Locus_id=Os01g0753175;Note=Non-protein coding transcript.;Transcript_evidence=EU950761 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0753175-00
Chr01	irgsp1_rep	exon	31605596	31605688	.	+	.	Parent=Os01t0753175-00
Chr01	irgsp1_rep	exon	31605812	31606321	.	+	.	Parent=Os01t0753175-00
Chr01	irgsp1_rep	exon	31607216	31607374	.	+	.	Parent=Os01t0753175-00
Chr01	irgsp1_rep	mRNA	31608109	31609696	.	-	.	ID=Os01t0753200-01;Name=Os01t0753200-01;Locus_id=Os01g0753200;Note=Similar to DNA binding protein.;Transcript_evidence=AK099571 (DDBJ%2C Best hit);ORF_evidence=XP_002882610.1 (RefSeq);GO=Biological Process: nucleotide-excision repair (GO:0006289),Biological Process: protein phosphorylation (GO:0006468),Molecular Function: DNA binding (GO:0003677),Molecular Function: nuclease activity (GO:0004518),Molecular Function: calmodulin-dependent protein kinase activity (GO:0004683),Molecular Function: calmodulin binding (GO:0005516);InterPro=UvrB/UvrC protein (IPR001943),Calcium/calmodulin-dependent protein kinase II%2C association-domain (IPR013543);NIAS_FLcDNA=J013035E10;TENOR=Os01t0753200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	31609684	31609696	.	-	.	Parent=Os01t0753200-01
Chr01	irgsp1_rep	CDS	31609503	31609683	.	-	0	Parent=Os01t0753200-01
Chr01	irgsp1_rep	CDS	31608398	31608975	.	-	2	Parent=Os01t0753200-01
Chr01	irgsp1_rep	three_prime_UTR	31608109	31608397	.	-	.	Parent=Os01t0753200-01
Chr01	irgsp1_rep	mRNA	31610717	31612134	.	+	.	ID=Os01t0753300-00;Name=Os01t0753300-00;Locus_id=Os01g0753300;Note=Similar to Resveratrol O-methyltransferase.;Transcript_evidence=EU960220 (DDBJ);ORF_evidence=B6VJS4 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: O-methyltransferase activity (GO:0008171),Molecular Function: protein dimerization activity (GO:0046983);InterPro=O-methyltransferase%2C family 2 (IPR001077),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Plant methyltransferase dimerisation (IPR012967),O-methyltransferase%2C COMT%2C eukaryota (IPR016461);TENOR=Os01t0753300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	31610717	31610737	.	+	.	Parent=Os01t0753300-00
Chr01	irgsp1_rep	CDS	31610738	31611562	.	+	0	Parent=Os01t0753300-00
Chr01	irgsp1_rep	CDS	31611822	31612133	.	+	0	Parent=Os01t0753300-00
Chr01	irgsp1_rep	three_prime_UTR	31612134	31612134	.	+	.	Parent=Os01t0753300-00
Chr01	irgsp1_rep	mRNA	31612795	31614643	.	+	.	ID=Os01t0753400-01;Name=Os01t0753400-01;Locus_id=Os01g0753400;Note=Conserved hypothetical protein.;Transcript_evidence=AK110690 (DDBJ%2C Best hit);ORF_evidence=B9F8W7 (UniProt);NIAS_FLcDNA=002-170-A03;Expression=AK110690;TENOR=Os01t0753400-01;KEGG=Os01t0753400-01
Chr01	irgsp1_rep	five_prime_UTR	31612795	31613199	.	+	.	Parent=Os01t0753400-01
Chr01	irgsp1_rep	CDS	31613200	31613431	.	+	0	Parent=Os01t0753400-01
Chr01	irgsp1_rep	CDS	31613605	31613738	.	+	2	Parent=Os01t0753400-01
Chr01	irgsp1_rep	three_prime_UTR	31613739	31613760	.	+	.	Parent=Os01t0753400-01
Chr01	irgsp1_rep	three_prime_UTR	31614428	31614643	.	+	.	Parent=Os01t0753400-01
Chr01	irgsp1_rep	mRNA	31617190	31623205	.	-	.	ID=Os01t0753500-01;Name=Os01t0753500-01;Locus_id=Os01g0753500;CGSNL Gene Symbol=ARF3;CGSNL Gene Name=AUXIN RESPONSE FACTOR 3;Oryzabase Gene Symbol Synonym(s)=OsARF3%2C ETT3%2C Os ETT3%2C OsETT3%2C DLN20%2C OsDLN20;Oryzabase Gene Name Synonym(s)=auxin response factor-3%2C auxin response factor 3%2C OsETTIN3%2C ETTIN 3%2C DLN repressor 20%2C DLN motif protein 20;Note=Transcriptional factor B3 family protein.;Transcript_evidence=AK072330 (DDBJ%2C Best hit);ORF_evidence=Q5JMM1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: response to hormone stimulus (GO:0009725),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),Auxin response factor (IPR010525),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=J023039P13;Oryzabase=10004;Expression=AK072330;TENOR=Os01t0753500-01;KEGG=Os01t0753500-01
Chr01	irgsp1_rep	five_prime_UTR	31622910	31623205	.	-	.	Parent=Os01t0753500-01
Chr01	irgsp1_rep	CDS	31622490	31622909	.	-	0	Parent=Os01t0753500-01
Chr01	irgsp1_rep	CDS	31622347	31622403	.	-	0	Parent=Os01t0753500-01
Chr01	irgsp1_rep	CDS	31621755	31621937	.	-	0	Parent=Os01t0753500-01
Chr01	irgsp1_rep	CDS	31621566	31621650	.	-	0	Parent=Os01t0753500-01
Chr01	irgsp1_rep	CDS	31620842	31620932	.	-	2	Parent=Os01t0753500-01
Chr01	irgsp1_rep	CDS	31620594	31620758	.	-	1	Parent=Os01t0753500-01
Chr01	irgsp1_rep	CDS	31620357	31620473	.	-	1	Parent=Os01t0753500-01
Chr01	irgsp1_rep	CDS	31620205	31620280	.	-	1	Parent=Os01t0753500-01
Chr01	irgsp1_rep	CDS	31618672	31618834	.	-	0	Parent=Os01t0753500-01
Chr01	irgsp1_rep	CDS	31617747	31618585	.	-	2	Parent=Os01t0753500-01
Chr01	irgsp1_rep	three_prime_UTR	31617730	31617746	.	-	.	Parent=Os01t0753500-01
Chr01	irgsp1_rep	three_prime_UTR	31617190	31617622	.	-	.	Parent=Os01t0753500-01
Chr01	irgsp1_rep	mRNA	31629372	31630731	.	+	.	ID=Os01t0753800-01;Name=Os01t0753800-01;Locus_id=Os01g0753800;Note=Conserved hypothetical protein.;Transcript_evidence=AK121555 (DDBJ%2C Best hit);ORF_evidence=A2WV59 (UniProt);NIAS_FLcDNA=J033033I01;Expression=AK121555;TENOR=Os01t0753800-01;KEGG=Os01t0753800-01
Chr01	irgsp1_rep	five_prime_UTR	31629372	31629424	.	+	.	Parent=Os01t0753800-01
Chr01	irgsp1_rep	CDS	31629425	31630465	.	+	0	Parent=Os01t0753800-01
Chr01	irgsp1_rep	three_prime_UTR	31630466	31630731	.	+	.	Parent=Os01t0753800-01
Chr01	irgsp1_rep	mRNA	31635593	31637775	.	+	.	ID=Os01t0754000-01;Name=Os01t0754000-01;Locus_id=Os01g0754000;Note=Conserved hypothetical protein.;Transcript_evidence=AK063730 (DDBJ%2C Best hit);ORF_evidence=XP_002456370.1 (RefSeq);NIAS_FLcDNA=001-120-E05;Expression=AK063730;TENOR=Os01t0754000-01;KEGG=Os01t0754000-01
Chr01	irgsp1_rep	five_prime_UTR	31635593	31635625	.	+	.	Parent=Os01t0754000-01
Chr01	irgsp1_rep	CDS	31635626	31635777	.	+	0	Parent=Os01t0754000-01
Chr01	irgsp1_rep	CDS	31635899	31636026	.	+	1	Parent=Os01t0754000-01
Chr01	irgsp1_rep	CDS	31637455	31637474	.	+	2	Parent=Os01t0754000-01
Chr01	irgsp1_rep	three_prime_UTR	31637475	31637775	.	+	.	Parent=Os01t0754000-01
Chr01	irgsp1_rep	mRNA	31638589	31640361	.	-	.	ID=Os01t0754100-01;Name=Os01t0754100-01;Locus_id=Os01g0754100;Note=Nucleic acid-binding%2C OB-fold domain containing protein.;Transcript_evidence=AK067551 (DDBJ%2C Best hit);ORF_evidence=NP_001146919.1 (RefSeq);InterPro=Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=J013108H01;Expression=AK067551;TENOR=Os01t0754100-01;KEGG=Os01t0754100-01
Chr01	irgsp1_rep	five_prime_UTR	31640312	31640361	.	-	.	Parent=Os01t0754100-01
Chr01	irgsp1_rep	CDS	31640077	31640311	.	-	0	Parent=Os01t0754100-01
Chr01	irgsp1_rep	CDS	31638982	31639169	.	-	2	Parent=Os01t0754100-01
Chr01	irgsp1_rep	three_prime_UTR	31638589	31638981	.	-	.	Parent=Os01t0754100-01
Chr01	irgsp1_rep	mRNA	31638713	31638950	.	-	.	ID=Os01t0754100-02;Name=Os01t0754100-02;Locus_id=Os01g0754100;Note=Non-protein coding transcript.;Transcript_evidence=AK058239 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-011-G01;TENOR=Os01t0754100-02
Chr01	irgsp1_rep	exon	31638713	31638950	.	-	.	Parent=Os01t0754100-02
Chr01	irgsp1_rep	mRNA	31641504	31648357	.	-	.	ID=Os01t0754200-01;Name=Os01t0754200-01;Locus_id=Os01g0754200;CGSNL Gene Symbol=GSL3;CGSNL Gene Name=BETA-1%2C3-GLUCANASE ACTIVITY 3;Oryzabase Gene Symbol Synonym(s)=OsGSL3;Oryzabase Gene Name Synonym(s)=Oryza sativa callose synthase 3%2C callose synthase 3;Note=Glycosyl transferase%2C family 48 protein.;Transcript_evidence=AK099782 (DDBJ%2C Best hit);ORF_evidence=C6GFB7 (UniProt);GO=Biological Process: 1%2C3-beta-D-glucan biosynthetic process (GO:0006075),Cellular Component: 1%2C3-beta-D-glucan synthase complex (GO:0000148),Cellular Component: membrane (GO:0016020),Molecular Function: 1%2C3-beta-D-glucan synthase activity (GO:0003843);InterPro=Glycosyl transferase%2C family 48 (IPR003440);NIAS_FLcDNA=J013095O05;Oryzabase=8538;Expression=AK099782;TENOR=Os01t0754200-01;KEGG=Os01t0754200-01 (EC:2.4.1.-)
Chr01	irgsp1_rep	five_prime_UTR	31648243	31648357	.	-	.	Parent=Os01t0754200-01
Chr01	irgsp1_rep	five_prime_UTR	31648139	31648155	.	-	.	Parent=Os01t0754200-01
Chr01	irgsp1_rep	CDS	31642766	31648138	.	-	0	Parent=Os01t0754200-01
Chr01	irgsp1_rep	three_prime_UTR	31642765	31642765	.	-	.	Parent=Os01t0754200-01
Chr01	irgsp1_rep	three_prime_UTR	31641504	31641766	.	-	.	Parent=Os01t0754200-01
Chr01	irgsp1_rep	mRNA	31641469	31648234	.	-	.	ID=Os01t0754200-02;Name=Os01t0754200-02;Locus_id=Os01g0754200;CGSNL Gene Symbol=GSL3;CGSNL Gene Name=BETA-1%2C3-GLUCANASE ACTIVITY 3;Oryzabase Gene Symbol Synonym(s)=OsGSL3;Oryzabase Gene Name Synonym(s)=Oryza sativa callose synthase 3%2C callose synthase 3;Note=Similar to ATGSL05 (GLUCAN SYNTHASE-LIKE 5)%3B 1%2C3-beta-glucan synthase/ transferase%2C transferring glycosyl groups.;Transcript_evidence=AK120402 (DDBJ%2C Best hit);ORF_evidence=C6GFB7 (UniProt);GO=Biological Process: 1%2C3-beta-D-glucan biosynthetic process (GO:0006075),Cellular Component: 1%2C3-beta-D-glucan synthase complex (GO:0000148),Cellular Component: membrane (GO:0016020),Molecular Function: 1%2C3-beta-D-glucan synthase activity (GO:0003843);InterPro=Glycosyl transferase%2C family 48 (IPR003440);NIAS_FLcDNA=J013088I17;Oryzabase=8538;Expression=AK120402;TENOR=Os01t0754200-02;KEGG=Os01t0754200-02 (EC:2.4.1.-)
Chr01	irgsp1_rep	five_prime_UTR	31648233	31648234	.	-	.	Parent=Os01t0754200-02
Chr01	irgsp1_rep	CDS	31648019	31648232	.	-	0	Parent=Os01t0754200-02
Chr01	irgsp1_rep	CDS	31642766	31647645	.	-	2	Parent=Os01t0754200-02
Chr01	irgsp1_rep	three_prime_UTR	31642765	31642765	.	-	.	Parent=Os01t0754200-02
Chr01	irgsp1_rep	three_prime_UTR	31641469	31641766	.	-	.	Parent=Os01t0754200-02
Chr01	irgsp1_rep	mRNA	31641231	31648176	.	-	.	ID=Os01t0754200-03;Name=Os01t0754200-03;Locus_id=Os01g0754200;CGSNL Gene Symbol=GSL3;CGSNL Gene Name=BETA-1%2C3-GLUCANASE ACTIVITY 3;Oryzabase Gene Symbol Synonym(s)=OsGSL3;Oryzabase Gene Name Synonym(s)=Oryza sativa callose synthase 3%2C callose synthase 3;Note=Glycosyl transferase%2C family 48 protein.;Transcript_evidence=AK120195 (DDBJ%2C Best hit);ORF_evidence=C6GFB7 (UniProt);GO=Biological Process: 1%2C3-beta-D-glucan biosynthetic process (GO:0006075),Cellular Component: 1%2C3-beta-D-glucan synthase complex (GO:0000148),Cellular Component: membrane (GO:0016020),Molecular Function: 1%2C3-beta-D-glucan synthase activity (GO:0003843);InterPro=Glycosyl transferase%2C family 48 (IPR003440);NIAS_FLcDNA=J013036H01;Oryzabase=8538;Expression=AK120195;TENOR=Os01t0754200-03;KEGG=Os01t0754200-03 (EC:2.4.1.-)
Chr01	irgsp1_rep	five_prime_UTR	31648139	31648176	.	-	.	Parent=Os01t0754200-03
Chr01	irgsp1_rep	CDS	31642766	31648138	.	-	0	Parent=Os01t0754200-03
Chr01	irgsp1_rep	three_prime_UTR	31642765	31642765	.	-	.	Parent=Os01t0754200-03
Chr01	irgsp1_rep	three_prime_UTR	31641231	31641766	.	-	.	Parent=Os01t0754200-03
Chr01	irgsp1_rep	mRNA	31641469	31643969	.	-	.	ID=Os01t0754200-04;Name=Os01t0754200-04;Locus_id=Os01g0754200;CGSNL Gene Symbol=GSL3;CGSNL Gene Name=BETA-1%2C3-GLUCANASE ACTIVITY 3;Oryzabase Gene Symbol Synonym(s)=OsGSL3;Oryzabase Gene Name Synonym(s)=Oryza sativa callose synthase 3%2C callose synthase 3;Note=Similar to predicted protein.;Transcript_evidence=AK099834 (DDBJ%2C Best hit);ORF_evidence=C6GFB7 (UniProt);GO=Biological Process: 1%2C3-beta-D-glucan biosynthetic process (GO:0006075),Cellular Component: 1%2C3-beta-D-glucan synthase complex (GO:0000148),Cellular Component: membrane (GO:0016020),Molecular Function: 1%2C3-beta-D-glucan synthase activity (GO:0003843);InterPro=Glycosyl transferase%2C family 48 (IPR003440);NIAS_FLcDNA=J013106H04;Oryzabase=8538;Expression=AK099834;TENOR=Os01t0754200-04;KEGG=Os01t0754200-04 (EC:2.4.1.-)
Chr01	irgsp1_rep	five_prime_UTR	31643969	31643969	.	-	.	Parent=Os01t0754200-04
Chr01	irgsp1_rep	CDS	31642766	31643968	.	-	0	Parent=Os01t0754200-04
Chr01	irgsp1_rep	three_prime_UTR	31642765	31642765	.	-	.	Parent=Os01t0754200-04
Chr01	irgsp1_rep	three_prime_UTR	31641469	31641766	.	-	.	Parent=Os01t0754200-04
Chr01	irgsp1_rep	mRNA	31647340	31648756	.	+	.	ID=Os01t0754300-01;Name=Os01t0754300-01;Locus_id=Os01g0754300;Note=Hypothetical protein.;Transcript_evidence=AK108081 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-138-G01;Expression=AK108081;TENOR=Os01t0754300-01;KEGG=Os01t0754300-01
Chr01	irgsp1_rep	five_prime_UTR	31647340	31647749	.	+	.	Parent=Os01t0754300-01
Chr01	irgsp1_rep	CDS	31647750	31648187	.	+	0	Parent=Os01t0754300-01
Chr01	irgsp1_rep	three_prime_UTR	31648188	31648756	.	+	.	Parent=Os01t0754300-01
Chr01	irgsp1_rep	mRNA	31651616	31656436	.	-	.	ID=Os01t0754500-01;Name=Os01t0754500-01;Locus_id=Os01g0754500;Note=Protein of unknown function DUF1421 family protein.;Transcript_evidence=AK073811 (DDBJ%2C Best hit);ORF_evidence=B8A9R2 (UniProt);InterPro=Protein of unknown function DUF1421 (IPR010820);NIAS_FLcDNA=J033066K05;Expression=AK073811;TENOR=Os01t0754500-01;KEGG=Os01t0754500-01
Chr01	irgsp1_rep	five_prime_UTR	31656357	31656436	.	-	.	Parent=Os01t0754500-01
Chr01	irgsp1_rep	CDS	31656228	31656356	.	-	0	Parent=Os01t0754500-01
Chr01	irgsp1_rep	CDS	31654612	31654881	.	-	0	Parent=Os01t0754500-01
Chr01	irgsp1_rep	CDS	31651878	31653263	.	-	0	Parent=Os01t0754500-01
Chr01	irgsp1_rep	three_prime_UTR	31651616	31651877	.	-	.	Parent=Os01t0754500-01
Chr01	irgsp1_rep	mRNA	31651616	31652944	.	-	.	ID=Os01t0754500-02;Name=Os01t0754500-02;Locus_id=Os01g0754500;Note=Hypothetical conserved gene.;Transcript_evidence=AK060895 (DDBJ%2C Best hit);ORF_evidence=B8A9R2 (UniProt);InterPro=Protein of unknown function DUF1421 (IPR010820);NIAS_FLcDNA=001-035-C09;Expression=AK060895;TENOR=Os01t0754500-02;KEGG=Os01t0754500-02
Chr01	irgsp1_rep	five_prime_UTR	31652943	31652944	.	-	.	Parent=Os01t0754500-02
Chr01	irgsp1_rep	CDS	31651878	31652942	.	-	0	Parent=Os01t0754500-02
Chr01	irgsp1_rep	three_prime_UTR	31651616	31651877	.	-	.	Parent=Os01t0754500-02
Chr01	irgsp1_rep	mRNA	31661724	31664288	.	-	.	ID=Os01t0754700-01;Name=Os01t0754700-01;Locus_id=Os01g0754700;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK288538 (DDBJ%2C Best hit);ORF_evidence=NP_001172571.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J090045K13;TENOR=Os01t0754700-01;KEGG=Os01t0754700-01
Chr01	irgsp1_rep	five_prime_UTR	31664082	31664288	.	-	.	Parent=Os01t0754700-01
Chr01	irgsp1_rep	CDS	31662090	31664081	.	-	0	Parent=Os01t0754700-01
Chr01	irgsp1_rep	three_prime_UTR	31661724	31662089	.	-	.	Parent=Os01t0754700-01
Chr01	irgsp1_rep	mRNA	31669359	31670159	.	-	.	ID=Os01t0754800-01;Name=Os01t0754800-01;Locus_id=Os01g0754800;Note=Hypothetical protein.;Transcript_evidence=AK108976 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-153-E06;Expression=AK108976;TENOR=Os01t0754800-01;KEGG=Os01t0754800-01
Chr01	irgsp1_rep	five_prime_UTR	31670016	31670159	.	-	.	Parent=Os01t0754800-01
Chr01	irgsp1_rep	CDS	31669728	31670015	.	-	0	Parent=Os01t0754800-01
Chr01	irgsp1_rep	three_prime_UTR	31669359	31669727	.	-	.	Parent=Os01t0754800-01
Chr01	irgsp1_rep	mRNA	31681353	31689878	.	-	.	ID=Os01t0755100-01;Name=Os01t0755100-01;Locus_id=Os01g0755100;Note=Conserved hypothetical protein.;Transcript_evidence=AK067515 (DDBJ%2C Best hit);ORF_evidence=B8A9R3 (UniProt);NIAS_FLcDNA=J013109I20;TENOR=Os01t0755100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	31689824	31689878	.	-	.	Parent=Os01t0755100-01
Chr01	irgsp1_rep	CDS	31689764	31689823	.	-	0	Parent=Os01t0755100-01
Chr01	irgsp1_rep	CDS	31689055	31689130	.	-	0	Parent=Os01t0755100-01
Chr01	irgsp1_rep	CDS	31688669	31688789	.	-	2	Parent=Os01t0755100-01
Chr01	irgsp1_rep	CDS	31688405	31688590	.	-	1	Parent=Os01t0755100-01
Chr01	irgsp1_rep	CDS	31688078	31688290	.	-	1	Parent=Os01t0755100-01
Chr01	irgsp1_rep	CDS	31687491	31687994	.	-	1	Parent=Os01t0755100-01
Chr01	irgsp1_rep	CDS	31687061	31687243	.	-	1	Parent=Os01t0755100-01
Chr01	irgsp1_rep	CDS	31686840	31686971	.	-	1	Parent=Os01t0755100-01
Chr01	irgsp1_rep	CDS	31686204	31686383	.	-	1	Parent=Os01t0755100-01
Chr01	irgsp1_rep	CDS	31685926	31686097	.	-	1	Parent=Os01t0755100-01
Chr01	irgsp1_rep	CDS	31685083	31685147	.	-	0	Parent=Os01t0755100-01
Chr01	irgsp1_rep	CDS	31684950	31684989	.	-	1	Parent=Os01t0755100-01
Chr01	irgsp1_rep	CDS	31684555	31684713	.	-	0	Parent=Os01t0755100-01
Chr01	irgsp1_rep	CDS	31683881	31683993	.	-	0	Parent=Os01t0755100-01
Chr01	irgsp1_rep	CDS	31683717	31683792	.	-	1	Parent=Os01t0755100-01
Chr01	irgsp1_rep	CDS	31681775	31681780	.	-	0	Parent=Os01t0755100-01
Chr01	irgsp1_rep	three_prime_UTR	31681353	31681774	.	-	.	Parent=Os01t0755100-01
Chr01	irgsp1_rep	mRNA	31678312	31689874	.	-	.	ID=Os01t0755100-02;Name=Os01t0755100-02;Locus_id=Os01g0755100;Note=Conserved hypothetical protein.;Transcript_evidence=AK066203 (DDBJ%2C Best hit);ORF_evidence=B8A9R3 (UniProt);NIAS_FLcDNA=J013058B12;TENOR=Os01t0755100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	31689824	31689874	.	-	.	Parent=Os01t0755100-02
Chr01	irgsp1_rep	CDS	31689764	31689823	.	-	0	Parent=Os01t0755100-02
Chr01	irgsp1_rep	CDS	31689055	31689130	.	-	0	Parent=Os01t0755100-02
Chr01	irgsp1_rep	CDS	31688669	31688789	.	-	2	Parent=Os01t0755100-02
Chr01	irgsp1_rep	CDS	31688405	31688590	.	-	1	Parent=Os01t0755100-02
Chr01	irgsp1_rep	CDS	31688078	31688290	.	-	1	Parent=Os01t0755100-02
Chr01	irgsp1_rep	CDS	31687491	31687994	.	-	1	Parent=Os01t0755100-02
Chr01	irgsp1_rep	CDS	31687061	31687243	.	-	1	Parent=Os01t0755100-02
Chr01	irgsp1_rep	CDS	31686840	31686971	.	-	1	Parent=Os01t0755100-02
Chr01	irgsp1_rep	CDS	31686204	31686383	.	-	1	Parent=Os01t0755100-02
Chr01	irgsp1_rep	CDS	31685926	31686097	.	-	1	Parent=Os01t0755100-02
Chr01	irgsp1_rep	CDS	31685083	31685147	.	-	0	Parent=Os01t0755100-02
Chr01	irgsp1_rep	CDS	31684950	31684989	.	-	1	Parent=Os01t0755100-02
Chr01	irgsp1_rep	CDS	31684555	31684713	.	-	0	Parent=Os01t0755100-02
Chr01	irgsp1_rep	CDS	31683881	31683993	.	-	0	Parent=Os01t0755100-02
Chr01	irgsp1_rep	CDS	31683717	31683792	.	-	1	Parent=Os01t0755100-02
Chr01	irgsp1_rep	CDS	31681775	31681780	.	-	0	Parent=Os01t0755100-02
Chr01	irgsp1_rep	three_prime_UTR	31681712	31681774	.	-	.	Parent=Os01t0755100-02
Chr01	irgsp1_rep	three_prime_UTR	31678312	31678552	.	-	.	Parent=Os01t0755100-02
Chr01	irgsp1_rep	mRNA	31699518	31701126	.	+	.	ID=Os01t0755500-01;Name=Os01t0755500-01;Locus_id=Os01g0755500;RAP-DB Gene Symbol Synonym(s)=OsPCF7%2C PCF7;RAP-DB Gene Name Synonym(s)=PROLIFERATING CELL FACTOR 7;CGSNL Gene Symbol=PCF7;CGSNL Gene Name=PROLIFERATING CELL FACTOR 7;Oryzabase Gene Symbol Synonym(s)=OsPCF7;Note=Plant-specific transcription factor%2C miR319 target gene;Transcript_evidence=AK058570,AB071807;ORF_evidence=Q8LT05;NIAS_FLcDNA=001-017-E07;Manual Curation=January 4%2C 2018;Literature_PMID=23651319,12000681;Oryzabase=11694;Expression=AK058570;TENOR=Os01t0755500-01;KEGG=Os01t0755500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	31699518	31700169	.	+	.	Parent=Os01t0755500-01
Chr01	irgsp1_rep	CDS	31700170	31700982	.	+	0	Parent=Os01t0755500-01
Chr01	irgsp1_rep	three_prime_UTR	31700983	31701126	.	+	.	Parent=Os01t0755500-01
Chr01	irgsp1_rep	mRNA	31700007	31701316	.	-	.	ID=Os01t0755550-00;Name=Os01t0755550-00;Locus_id=Os01g0755550;Note=Hypothetical gene.;Transcript_evidence=BT085212 (DDBJ);ORF_evidence=GeneMark;TENOR=Os01t0755550-00;KEGG=Os01t0755550-00
Chr01	irgsp1_rep	five_prime_UTR	31701019	31701316	.	-	.	Parent=Os01t0755550-00
Chr01	irgsp1_rep	CDS	31700803	31701018	.	-	0	Parent=Os01t0755550-00
Chr01	irgsp1_rep	three_prime_UTR	31700007	31700802	.	-	.	Parent=Os01t0755550-00
Chr01	irgsp1_rep	mRNA	31705732	31706365	.	-	.	ID=Os01t0755600-01;Name=Os01t0755600-01;Locus_id=Os01g0755600;Note=Similar to GRAS family transcription factor containing protein%2C expressed.;Transcript_evidence=AK241384 (DDBJ%2C Best hit);ORF_evidence=Q7XCD7 (UniProt);NIAS_FLcDNA=J065156A22;TENOR=Os01t0755600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	31706364	31706365	.	-	.	Parent=Os01t0755600-01
Chr01	irgsp1_rep	CDS	31705962	31706363	.	-	0	Parent=Os01t0755600-01
Chr01	irgsp1_rep	three_prime_UTR	31705732	31705961	.	-	.	Parent=Os01t0755600-01
Chr01	irgsp1_rep	mRNA	31710636	31711784	.	+	.	ID=Os01t0755700-01;Name=Os01t0755700-01;Locus_id=Os01g0755700;RAP-DB Gene Symbol Synonym(s)=NBIP1;RAP-DB Gene Name Synonym(s)=NRT1.1B interacting protein 1;CGSNL Gene Symbol=NBIP1;CGSNL Gene Name=NRT1.1B INTERACTING PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsNBIP1;Oryzabase Gene Name Synonym(s)=NRT1.1B interacting protein 1;Note=RING-type E3 ubiquitin ligase%2C Regulation of phosphate and nitrate signalling;Transcript_evidence=AK108853;ORF_evidence=Q8S1W2;GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING-CH-type (IPR011016);NIAS_FLcDNA=002-152-A11;Manual Curation=February 14%2C 2020;Literature_PMID=30911122;Oryzabase=23319;Expression=AK108853;TENOR=Os01t0755700-01;KEGG=Os01t0755700-01;Subcellular location=plasma membrane (GO:0005886)
Chr01	irgsp1_rep	five_prime_UTR	31710636	31710812	.	+	.	Parent=Os01t0755700-01
Chr01	irgsp1_rep	CDS	31710813	31711529	.	+	0	Parent=Os01t0755700-01
Chr01	irgsp1_rep	three_prime_UTR	31711530	31711784	.	+	.	Parent=Os01t0755700-01
Chr01	irgsp1_rep	mRNA	31717300	31719808	.	-	.	ID=Os01t0756000-00;Name=Os01t0756000-00;Locus_id=Os01g0756000;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5JMK9 (UniProt);TENOR=Os01t0756000-00
Chr01	irgsp1_rep	CDS	31718113	31719808	.	-	0	Parent=Os01t0756000-00
Chr01	irgsp1_rep	CDS	31717879	31717973	.	-	2	Parent=Os01t0756000-00
Chr01	irgsp1_rep	CDS	31717300	31717392	.	-	0	Parent=Os01t0756000-00
Chr01	irgsp1_rep	mRNA	31724224	31725303	.	-	.	ID=Os01t0756101-00;Name=Os01t0756101-00;Locus_id=Os01g0756101;Note=Conserved hypothetical protein.;Transcript_evidence=BT035939 (DDBJ);ORF_evidence=B8A9R6 (UniProt);TENOR=Os01t0756101-00
Chr01	irgsp1_rep	CDS	31724830	31725303	.	-	0	Parent=Os01t0756101-00
Chr01	irgsp1_rep	CDS	31724506	31724586	.	-	0	Parent=Os01t0756101-00
Chr01	irgsp1_rep	three_prime_UTR	31724224	31724505	.	-	.	Parent=Os01t0756101-00
Chr01	irgsp1_rep	mRNA	31728015	31730360	.	+	.	ID=Os01t0756200-01;Name=Os01t0756200-01;Locus_id=Os01g0756200;CGSNL Gene Symbol=BZIP6;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 6;Oryzabase Gene Symbol Synonym(s)=OsbZIP06%2C OsbZIP6;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 06;Note=Similar to VirE2-interacting protein VIP1.;Transcript_evidence=AK108553 (DDBJ%2C Best hit);ORF_evidence=B4FPU8 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);NIAS_FLcDNA=002-144-E08;Oryzabase=10096;Expression=AK108553;TENOR=Os01t0756200-01;KEGG=Os01t0756200-01
Chr01	irgsp1_rep	five_prime_UTR	31728015	31728097	.	+	.	Parent=Os01t0756200-01
Chr01	irgsp1_rep	CDS	31728098	31728525	.	+	0	Parent=Os01t0756200-01
Chr01	irgsp1_rep	CDS	31728656	31728746	.	+	1	Parent=Os01t0756200-01
Chr01	irgsp1_rep	CDS	31729694	31729820	.	+	0	Parent=Os01t0756200-01
Chr01	irgsp1_rep	CDS	31729979	31730130	.	+	2	Parent=Os01t0756200-01
Chr01	irgsp1_rep	three_prime_UTR	31730131	31730360	.	+	.	Parent=Os01t0756200-01
Chr01	irgsp1_rep	mRNA	31731988	31732949	.	-	.	ID=Os01t0756300-01;Name=Os01t0756300-01;Locus_id=Os01g0756300;Note=Conserved hypothetical protein.;Transcript_evidence=AK069648 (DDBJ%2C Best hit);ORF_evidence=A2WV72 (UniProt);NIAS_FLcDNA=J023026P15;Expression=AK069648;TENOR=Os01t0756300-01;KEGG=Os01t0756300-01
Chr01	irgsp1_rep	five_prime_UTR	31732852	31732949	.	-	.	Parent=Os01t0756300-01
Chr01	irgsp1_rep	CDS	31732300	31732851	.	-	0	Parent=Os01t0756300-01
Chr01	irgsp1_rep	three_prime_UTR	31731988	31732299	.	-	.	Parent=Os01t0756300-01
Chr01	irgsp1_rep	mRNA	31738060	31739670	.	-	.	ID=Os01t0756400-01;Name=Os01t0756400-01;Locus_id=Os01g0756400;Note=Conserved hypothetical protein.;Transcript_evidence=AK105125 (DDBJ%2C Best hit);ORF_evidence=Q5JM05 (UniProt);NIAS_FLcDNA=001-101-E01;Expression=AK105125;TENOR=Os01t0756400-01;KEGG=Os01t0756400-01
Chr01	irgsp1_rep	CDS	31739458	31739670	.	-	0	Parent=Os01t0756400-01
Chr01	irgsp1_rep	CDS	31739110	31739209	.	-	0	Parent=Os01t0756400-01
Chr01	irgsp1_rep	CDS	31738349	31738494	.	-	2	Parent=Os01t0756400-01
Chr01	irgsp1_rep	three_prime_UTR	31738060	31738348	.	-	.	Parent=Os01t0756400-01
Chr01	irgsp1_rep	mRNA	31740713	31742519	.	+	.	ID=Os01t0756501-00;Name=Os01t0756501-00;Locus_id=Os01g0756501;Note=Non-protein coding transcript.;Transcript_evidence=BT086928 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0756501-00
Chr01	irgsp1_rep	exon	31740713	31740800	.	+	.	Parent=Os01t0756501-00
Chr01	irgsp1_rep	exon	31742184	31742269	.	+	.	Parent=Os01t0756501-00
Chr01	irgsp1_rep	exon	31742392	31742519	.	+	.	Parent=Os01t0756501-00
Chr01	irgsp1_rep	mRNA	31749292	31753362	.	+	.	ID=Os01t0756600-01;Name=Os01t0756600-01;Locus_id=Os01g0756600;Note=Protein of unknown function DUF642 family protein.;Transcript_evidence=AK060989 (DDBJ%2C Best hit),AK102373 (DDBJ%2C Best hit);ORF_evidence=B8A9R9 (UniProt);InterPro=Protein of unknown function DUF642 (IPR006946),Galactose-binding domain-like (IPR008979);NIAS_FLcDNA=006-203-C09,J033091N05;Expression=AK060989;TENOR=Os01t0756600-01;KEGG=Os01t0756600-01
Chr01	irgsp1_rep	five_prime_UTR	31749292	31749437	.	+	.	Parent=Os01t0756600-01
Chr01	irgsp1_rep	CDS	31749438	31749540	.	+	0	Parent=Os01t0756600-01
Chr01	irgsp1_rep	CDS	31751762	31751929	.	+	2	Parent=Os01t0756600-01
Chr01	irgsp1_rep	CDS	31752026	31752361	.	+	2	Parent=Os01t0756600-01
Chr01	irgsp1_rep	CDS	31752490	31753082	.	+	2	Parent=Os01t0756600-01
Chr01	irgsp1_rep	three_prime_UTR	31753083	31753362	.	+	.	Parent=Os01t0756600-01
Chr01	irgsp1_rep	mRNA	31761223	31763887	.	+	.	ID=Os01t0756700-01;Name=Os01t0756700-01;Locus_id=Os01g0756700;RAP-DB Gene Symbol Synonym(s)=KAT1%2C OsKAT1;RAP-DB Gene Name Synonym(s)=SHAKER POTASSIUM CHANNEL 1%2C shaker potassium channel OsKAT1;CGSNL Gene Symbol=KAT1;CGSNL Gene Name=SHAKER POTASSIUM CHANNEL 1;Oryzabase Gene Symbol Synonym(s)=OsKAT1;Oryzabase Gene Name Synonym(s)=shaker potassium channel OsKAT1;Note=Shaker potassium channel%2C Salinity stress tolerance%2C Ion homeostasis;Transcript_evidence=AK100739;ORF_evidence=Q5JM04;GO=Biological Process: ion transport (GO:0006811),Biological Process: potassium ion transport (GO:0006813),Biological Process: transmembrane transport (GO:0055085),Molecular Function: ion channel activity (GO:0005216),Molecular Function: voltage-gated potassium channel activity (GO:0005249),Cellular Component: membrane (GO:0016020);InterPro=Potassium channel%2C voltage-dependent%2C EAG/ELK/ERG (IPR003938),Ion transport domain (IPR005821),RmlC-like jelly roll fold (IPR014710),Cyclic nucleotide-binding-like (IPR018490),Cyclic nucleotide-binding domain (IPR000595);NIAS_FLcDNA=J023118D04;Manual Curation=December 16%2C 2016;Literature_PMID=23967316,17586689;Oryzabase=10366;Expression=AK100739;TENOR=Os01t0756700-01;KEGG=Os01t0756700-01
Chr01	irgsp1_rep	five_prime_UTR	31761223	31761302	.	+	.	Parent=Os01t0756700-01
Chr01	irgsp1_rep	CDS	31761303	31761493	.	+	0	Parent=Os01t0756700-01
Chr01	irgsp1_rep	CDS	31761604	31761819	.	+	1	Parent=Os01t0756700-01
Chr01	irgsp1_rep	CDS	31761928	31762083	.	+	1	Parent=Os01t0756700-01
Chr01	irgsp1_rep	CDS	31762188	31762245	.	+	1	Parent=Os01t0756700-01
Chr01	irgsp1_rep	CDS	31762360	31762677	.	+	0	Parent=Os01t0756700-01
Chr01	irgsp1_rep	CDS	31762768	31763007	.	+	0	Parent=Os01t0756700-01
Chr01	irgsp1_rep	CDS	31763087	31763185	.	+	0	Parent=Os01t0756700-01
Chr01	irgsp1_rep	CDS	31763271	31763303	.	+	0	Parent=Os01t0756700-01
Chr01	irgsp1_rep	CDS	31763412	31763609	.	+	0	Parent=Os01t0756700-01
Chr01	irgsp1_rep	three_prime_UTR	31763610	31763887	.	+	.	Parent=Os01t0756700-01
Chr01	irgsp1_rep	mRNA	31766460	31767099	.	+	.	ID=Os01t0756900-01;Name=Os01t0756900-01;Locus_id=Os01g0756900;CGSNL Gene Symbol=AGP17;CGSNL Gene Name=ARABINOGALACTAN PROTEIN 17;Oryzabase Gene Symbol Synonym(s)=OsAGP17;Oryzabase Gene Name Synonym(s)=Arabinogalactan protein 17;Note=Hypothetical protein.;Transcript_evidence=AK058427 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=001-015-E07;Oryzabase=11310;TENOR=Os01t0756900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	31766460	31766461	.	+	.	Parent=Os01t0756900-01
Chr01	irgsp1_rep	CDS	31766462	31766842	.	+	0	Parent=Os01t0756900-01
Chr01	irgsp1_rep	three_prime_UTR	31766843	31767099	.	+	.	Parent=Os01t0756900-01
Chr01	irgsp1_rep	mRNA	31787536	31788089	.	-	.	ID=Os01t0757051-00;Name=Os01t0757051-00;Locus_id=Os01g0757051;Note=Non-protein coding transcript.;Transcript_evidence=CU861721 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os01t0757051-00
Chr01	irgsp1_rep	exon	31787536	31788089	.	-	.	Parent=Os01t0757051-00
Chr01	irgsp1_rep	mRNA	31795105	31797640	.	+	.	ID=Os01t0757200-01;Name=Os01t0757200-01;Locus_id=Os01g0757200;RAP-DB Gene Symbol Synonym(s)=GA2OX3%2C OsGA2ox3%2C ga2ox 3%2C OsGA2ox-3%2C GA2ox3%2C GA2ox-3;RAP-DB Gene Name Synonym(s)=GIBBERELLIN 2-OXIDASE 3%2C rice GA 2-oxidase3%2C GA 2-oxidase 3%2C Gibberellin 2-oxidase 3;CGSNL Gene Symbol=GA2OX3;CGSNL Gene Name=GIBBERELLIN 2-OXIDASE 3;Oryzabase Gene Symbol Synonym(s)=OsGA2ox3%2C ga2ox 3%2C OsGA2ox-3%2C GA2ox3%2C GA2ox-3%2C GA2ox4;Oryzabase Gene Name Synonym(s)=rice GA 2-oxidase3%2C GA 2-oxidase 3%2C Gibberellin 2-oxidase 3;Note=GA 2-oxidase3%2C GA metabolism;Transcript_evidence=AB092485 (Genbank),AK101713 (Genbank),AK060666 (Genbank),AK060714 (Genbank),AK099350 (Genbank);ORF_evidence=Q8S0S6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=J033060N07,001-028-C12,001-031-D01,J033030O19;Manual Curation=May 19%2C 2009;Literature_PMID=12736788,15075394;Oryzabase=5116;TENOR=Os01t0757200-01
Chr01	irgsp1_rep	five_prime_UTR	31795105	31795254	.	+	.	Parent=Os01t0757200-01
Chr01	irgsp1_rep	CDS	31795255	31795649	.	+	0	Parent=Os01t0757200-01
Chr01	irgsp1_rep	CDS	31795752	31796097	.	+	1	Parent=Os01t0757200-01
Chr01	irgsp1_rep	CDS	31796784	31797026	.	+	0	Parent=Os01t0757200-01
Chr01	irgsp1_rep	three_prime_UTR	31797027	31797640	.	+	.	Parent=Os01t0757200-01
Chr01	irgsp1_rep	mRNA	31795255	31796095	.	-	.	ID=Os01t0757301-00;Name=Os01t0757301-00;Locus_id=Os01g0757301;Note=Non-protein coding transcript.;Transcript_evidence=BT038748 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0757301-00
Chr01	irgsp1_rep	exon	31795255	31796095	.	-	.	Parent=Os01t0757301-00
Chr01	irgsp1_rep	mRNA	31806962	31811179	.	+	.	ID=Os01t0757400-01;Name=Os01t0757400-01;Locus_id=Os01g0757400;Oryzabase Gene Symbol Synonym(s)=SKD1;Oryzabase Gene Name Synonym(s)=SKD1 protein%2C Vacuolar sorting protein4b%2C Vacuolar sorting protein 4b;Note=Similar to Katanin p60 ATPase-containing subunit A1 (EC 3.6.4.3) (Katanin p60 subunit A1) (p60 katanin). Splice isoform 2.;Transcript_evidence=AK102585 (DDBJ%2C Best hit);ORF_evidence=XP_002956158.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959);NIAS_FLcDNA=J033098E22;Oryzabase=20522;Expression=AK102585;TENOR=Os01t0757400-01;KEGG=Os01t0757400-01 (EC:3.6.4.3)
Chr01	irgsp1_rep	five_prime_UTR	31806962	31807297	.	+	.	Parent=Os01t0757400-01
Chr01	irgsp1_rep	CDS	31807298	31807299	.	+	0	Parent=Os01t0757400-01
Chr01	irgsp1_rep	CDS	31807400	31807544	.	+	1	Parent=Os01t0757400-01
Chr01	irgsp1_rep	CDS	31807667	31807722	.	+	0	Parent=Os01t0757400-01
Chr01	irgsp1_rep	CDS	31808484	31808549	.	+	1	Parent=Os01t0757400-01
Chr01	irgsp1_rep	CDS	31808633	31808740	.	+	1	Parent=Os01t0757400-01
Chr01	irgsp1_rep	CDS	31808968	31809034	.	+	1	Parent=Os01t0757400-01
Chr01	irgsp1_rep	CDS	31809458	31809542	.	+	0	Parent=Os01t0757400-01
Chr01	irgsp1_rep	CDS	31809911	31810071	.	+	2	Parent=Os01t0757400-01
Chr01	irgsp1_rep	CDS	31810232	31810333	.	+	0	Parent=Os01t0757400-01
Chr01	irgsp1_rep	CDS	31810549	31810771	.	+	0	Parent=Os01t0757400-01
Chr01	irgsp1_rep	CDS	31810897	31811042	.	+	2	Parent=Os01t0757400-01
Chr01	irgsp1_rep	three_prime_UTR	31811043	31811179	.	+	.	Parent=Os01t0757400-01
Chr01	irgsp1_rep	mRNA	31807184	31811863	.	+	.	ID=Os01t0757400-02;Name=Os01t0757400-02;Locus_id=Os01g0757400;Oryzabase Gene Symbol Synonym(s)=SKD1;Oryzabase Gene Name Synonym(s)=SKD1 protein%2C Vacuolar sorting protein4b%2C Vacuolar sorting protein 4b;Note=Similar to Katanin p60 ATPase-containing subunit A1 (EC 3.6.4.3) (Katanin p60 subunit A1) (p60 katanin). Splice isoform 2.;Transcript_evidence=AK105474 (DDBJ%2C Best hit),AK058626 (DDBJ%2C Best hit);ORF_evidence=XP_002956158.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959);NIAS_FLcDNA=001-127-A04,001-018-C03;Oryzabase=20522;TENOR=Os01t0757400-02
Chr01	irgsp1_rep	five_prime_UTR	31807184	31807297	.	+	.	Parent=Os01t0757400-02
Chr01	irgsp1_rep	CDS	31807298	31807299	.	+	0	Parent=Os01t0757400-02
Chr01	irgsp1_rep	CDS	31807400	31807544	.	+	1	Parent=Os01t0757400-02
Chr01	irgsp1_rep	CDS	31807667	31807722	.	+	0	Parent=Os01t0757400-02
Chr01	irgsp1_rep	CDS	31808484	31808549	.	+	1	Parent=Os01t0757400-02
Chr01	irgsp1_rep	CDS	31808633	31808740	.	+	1	Parent=Os01t0757400-02
Chr01	irgsp1_rep	CDS	31808968	31809034	.	+	1	Parent=Os01t0757400-02
Chr01	irgsp1_rep	CDS	31809458	31809542	.	+	0	Parent=Os01t0757400-02
Chr01	irgsp1_rep	CDS	31809911	31810071	.	+	2	Parent=Os01t0757400-02
Chr01	irgsp1_rep	CDS	31810232	31810333	.	+	0	Parent=Os01t0757400-02
Chr01	irgsp1_rep	CDS	31810549	31810771	.	+	0	Parent=Os01t0757400-02
Chr01	irgsp1_rep	CDS	31810897	31811042	.	+	2	Parent=Os01t0757400-02
Chr01	irgsp1_rep	three_prime_UTR	31811043	31811863	.	+	.	Parent=Os01t0757400-02
Chr01	irgsp1_rep	mRNA	31811367	31814552	.	-	.	ID=Os01t0757500-01;Name=Os01t0757500-01;Locus_id=Os01g0757500;RAP-DB Gene Symbol Synonym(s)=OsBHT;RAP-DB Gene Name Synonym(s)=Booting stage Heat Tolerance%2C booting stage high-temperature tolerance;Oryzabase Gene Name Synonym(s)=calcyclin-binding protein;Note=Heat shock protein%2C Heat tolerance;Transcript_evidence=AK121744;ORF_evidence=Q5JLZ9;GO=Molecular Function: tubulin binding (GO:0015631),Molecular Function: ubiquitin protein ligase binding (GO:0031625),Molecular Function: S100 protein binding (GO:0044548);InterPro=Calcyclin-binding protein%2C N-terminal (IPR037201),HSP20-like chaperone (IPR008978),Siah interacting protein%2C N-terminal (IPR015120),CS domain (IPR007052),Calcyclin-binding Protein%2C CS domain (IPR037893),SGS domain (IPR007699);NIAS_FLcDNA=J033086D07;Manual Curation=August 24%2C 2020;Literature_PMID=32824161;Oryzabase=23577;Expression=AK121744;TENOR=Os01t0757500-01;KEGG=Os01t0757500-01
Chr01	irgsp1_rep	five_prime_UTR	31814512	31814552	.	-	.	Parent=Os01t0757500-01
Chr01	irgsp1_rep	CDS	31814395	31814511	.	-	0	Parent=Os01t0757500-01
Chr01	irgsp1_rep	CDS	31814109	31814267	.	-	0	Parent=Os01t0757500-01
Chr01	irgsp1_rep	CDS	31812462	31812701	.	-	0	Parent=Os01t0757500-01
Chr01	irgsp1_rep	CDS	31811755	31811814	.	-	0	Parent=Os01t0757500-01
Chr01	irgsp1_rep	CDS	31811553	31811657	.	-	0	Parent=Os01t0757500-01
Chr01	irgsp1_rep	three_prime_UTR	31811367	31811552	.	-	.	Parent=Os01t0757500-01
Chr01	irgsp1_rep	mRNA	31811409	31812602	.	-	.	ID=Os01t0757500-02;Name=Os01t0757500-02;Locus_id=Os01g0757500;Oryzabase Gene Name Synonym(s)=calcyclin-binding protein;Note=Similar to Calcyclin-binding protein.;Transcript_evidence=AK058268 (DDBJ%2C Best hit);ORF_evidence=B6SN82 (UniProt);InterPro=SGS (IPR007699),HSP20-like chaperone (IPR008978);NIAS_FLcDNA=001-013-B01;Oryzabase=23577;Expression=AK058268;TENOR=Os01t0757500-02;KEGG=Os01t0757500-02
Chr01	irgsp1_rep	CDS	31812462	31812602	.	-	0	Parent=Os01t0757500-02
Chr01	irgsp1_rep	CDS	31811755	31811814	.	-	0	Parent=Os01t0757500-02
Chr01	irgsp1_rep	CDS	31811553	31811657	.	-	0	Parent=Os01t0757500-02
Chr01	irgsp1_rep	three_prime_UTR	31811409	31811552	.	-	.	Parent=Os01t0757500-02
Chr01	irgsp1_rep	mRNA	31815517	31816532	.	-	.	ID=Os01t0757600-00;Name=Os01t0757600-00;Locus_id=Os01g0757600;Note=Similar to Myosin heavy chain-like protein (Fragment).;Transcript_evidence=ab initio prediction;ORF_evidence=Q84VF1 (UniProt);TENOR=Os01t0757600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	31816519	31816532	.	-	0	Parent=Os01t0757600-00
Chr01	irgsp1_rep	CDS	31816289	31816445	.	-	1	Parent=Os01t0757600-00
Chr01	irgsp1_rep	CDS	31815517	31816185	.	-	0	Parent=Os01t0757600-00
Chr01	irgsp1_rep	mRNA	31826639	31830179	.	-	.	ID=Os01t0757700-01;Name=Os01t0757700-01;Locus_id=Os01g0757700;Note=Similar to EMB1417.;Transcript_evidence=AK102734 (DDBJ%2C Best hit);ORF_evidence=NP_001150239.1 (RefSeq);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J033106B06;Expression=AK102734;TENOR=Os01t0757700-01;KEGG=Os01t0757700-01
Chr01	irgsp1_rep	five_prime_UTR	31830055	31830179	.	-	.	Parent=Os01t0757700-01
Chr01	irgsp1_rep	five_prime_UTR	31829856	31829863	.	-	.	Parent=Os01t0757700-01
Chr01	irgsp1_rep	CDS	31829766	31829855	.	-	0	Parent=Os01t0757700-01
Chr01	irgsp1_rep	CDS	31829576	31829674	.	-	0	Parent=Os01t0757700-01
Chr01	irgsp1_rep	CDS	31829072	31829215	.	-	0	Parent=Os01t0757700-01
Chr01	irgsp1_rep	CDS	31828544	31828852	.	-	0	Parent=Os01t0757700-01
Chr01	irgsp1_rep	three_prime_UTR	31826639	31828543	.	-	.	Parent=Os01t0757700-01
Chr01	irgsp1_rep	mRNA	31830303	31836694	.	+	.	ID=Os01t0757800-01;Name=Os01t0757800-01;Locus_id=Os01g0757800;Oryzabase Gene Symbol Synonym(s)=XPV;Oryzabase Gene Name Synonym(s)=DNA polymerase eta;Note=DNA polymerase eta domain containing protein.;Transcript_evidence=AK101271 (DDBJ%2C Best hit);ORF_evidence=Q5JLR8 (UniProt);GO=Biological Process: DNA repair (GO:0006281),Molecular Function: damaged DNA binding (GO:0003684),Molecular Function: DNA-directed DNA polymerase activity (GO:0003887);InterPro=DNA-repair protein%2C UmuC-like (IPR001126),DNA polymerase eta (IPR017061),DNA polymerase%2C Y-family%2C little finger domain (IPR017961),DNA-repair protein%2C UmuC-like%2C N-terminal (IPR017963);NIAS_FLcDNA=J033032P22;Oryzabase=21288;Expression=AK101271;TENOR=Os01t0757800-01;KEGG=Os01t0757800-01 (EC:2.7.7.7)
Chr01	irgsp1_rep	five_prime_UTR	31830303	31830400	.	+	.	Parent=Os01t0757800-01
Chr01	irgsp1_rep	CDS	31830401	31830476	.	+	0	Parent=Os01t0757800-01
Chr01	irgsp1_rep	CDS	31830601	31830721	.	+	2	Parent=Os01t0757800-01
Chr01	irgsp1_rep	CDS	31830820	31830931	.	+	1	Parent=Os01t0757800-01
Chr01	irgsp1_rep	CDS	31831020	31831187	.	+	0	Parent=Os01t0757800-01
Chr01	irgsp1_rep	CDS	31831269	31831433	.	+	0	Parent=Os01t0757800-01
Chr01	irgsp1_rep	CDS	31831537	31831640	.	+	0	Parent=Os01t0757800-01
Chr01	irgsp1_rep	CDS	31831759	31831878	.	+	1	Parent=Os01t0757800-01
Chr01	irgsp1_rep	CDS	31832086	31832209	.	+	1	Parent=Os01t0757800-01
Chr01	irgsp1_rep	CDS	31833309	31833422	.	+	0	Parent=Os01t0757800-01
Chr01	irgsp1_rep	CDS	31833531	31833722	.	+	0	Parent=Os01t0757800-01
Chr01	irgsp1_rep	CDS	31834070	31834166	.	+	0	Parent=Os01t0757800-01
Chr01	irgsp1_rep	CDS	31834247	31834395	.	+	2	Parent=Os01t0757800-01
Chr01	irgsp1_rep	CDS	31835315	31835402	.	+	0	Parent=Os01t0757800-01
Chr01	irgsp1_rep	CDS	31835481	31835745	.	+	2	Parent=Os01t0757800-01
Chr01	irgsp1_rep	CDS	31836362	31836395	.	+	1	Parent=Os01t0757800-01
Chr01	irgsp1_rep	three_prime_UTR	31836396	31836694	.	+	.	Parent=Os01t0757800-01
Chr01	irgsp1_rep	mRNA	31830307	31835983	.	+	.	ID=Os01t0757800-02;Name=Os01t0757800-02;Locus_id=Os01g0757800;Oryzabase Gene Symbol Synonym(s)=XPV;Oryzabase Gene Name Synonym(s)=DNA polymerase eta;Note=Hypothetical conserved gene.;Transcript_evidence=AK067990 (DDBJ%2C Best hit);ORF_evidence=Q5JLR8 (UniProt);GO=Biological Process: DNA repair (GO:0006281),Molecular Function: damaged DNA binding (GO:0003684),Molecular Function: DNA-directed DNA polymerase activity (GO:0003887);InterPro=DNA-repair protein%2C UmuC-like (IPR001126),DNA polymerase eta (IPR017061),DNA polymerase%2C Y-family%2C little finger domain (IPR017961),DNA-repair protein%2C UmuC-like%2C N-terminal (IPR017963);NIAS_FLcDNA=J013122J07;Oryzabase=21288;Expression=AK067990;TENOR=Os01t0757800-02;KEGG=Os01t0757800-02 (EC:2.7.7.7)
Chr01	irgsp1_rep	five_prime_UTR	31830307	31830400	.	+	.	Parent=Os01t0757800-02
Chr01	irgsp1_rep	CDS	31830401	31830476	.	+	0	Parent=Os01t0757800-02
Chr01	irgsp1_rep	CDS	31830601	31830721	.	+	2	Parent=Os01t0757800-02
Chr01	irgsp1_rep	CDS	31830820	31830931	.	+	1	Parent=Os01t0757800-02
Chr01	irgsp1_rep	CDS	31831020	31831187	.	+	0	Parent=Os01t0757800-02
Chr01	irgsp1_rep	CDS	31831269	31831433	.	+	0	Parent=Os01t0757800-02
Chr01	irgsp1_rep	CDS	31831537	31831640	.	+	0	Parent=Os01t0757800-02
Chr01	irgsp1_rep	CDS	31831759	31831878	.	+	1	Parent=Os01t0757800-02
Chr01	irgsp1_rep	CDS	31832086	31832209	.	+	1	Parent=Os01t0757800-02
Chr01	irgsp1_rep	CDS	31833309	31833422	.	+	0	Parent=Os01t0757800-02
Chr01	irgsp1_rep	CDS	31833531	31833722	.	+	0	Parent=Os01t0757800-02
Chr01	irgsp1_rep	CDS	31834070	31834166	.	+	0	Parent=Os01t0757800-02
Chr01	irgsp1_rep	CDS	31834247	31834395	.	+	2	Parent=Os01t0757800-02
Chr01	irgsp1_rep	CDS	31835315	31835402	.	+	0	Parent=Os01t0757800-02
Chr01	irgsp1_rep	CDS	31835481	31835755	.	+	2	Parent=Os01t0757800-02
Chr01	irgsp1_rep	three_prime_UTR	31835756	31835983	.	+	.	Parent=Os01t0757800-02
Chr01	irgsp1_rep	mRNA	31830605	31835967	.	+	.	ID=Os01t0757800-03;Name=Os01t0757800-03;Locus_id=Os01g0757800;Oryzabase Gene Symbol Synonym(s)=XPV;Oryzabase Gene Name Synonym(s)=DNA polymerase eta;Note=Hypothetical conserved gene.;Transcript_evidence=AK099226 (DDBJ%2C Best hit);ORF_evidence=Q5JLR8 (UniProt);GO=Biological Process: DNA repair (GO:0006281),Molecular Function: damaged DNA binding (GO:0003684),Molecular Function: DNA-directed DNA polymerase activity (GO:0003887);InterPro=DNA-repair protein%2C UmuC-like (IPR001126),DNA polymerase eta (IPR017061),DNA polymerase%2C Y-family%2C little finger domain (IPR017961),DNA-repair protein%2C UmuC-like%2C N-terminal (IPR017963);NIAS_FLcDNA=J013091M20;Oryzabase=21288;Expression=AK099226;TENOR=Os01t0757800-03;KEGG=Os01t0757800-03 (EC:2.7.7.7)
Chr01	irgsp1_rep	five_prime_UTR	31830605	31830605	.	+	.	Parent=Os01t0757800-03
Chr01	irgsp1_rep	CDS	31830606	31830721	.	+	0	Parent=Os01t0757800-03
Chr01	irgsp1_rep	CDS	31830820	31830931	.	+	1	Parent=Os01t0757800-03
Chr01	irgsp1_rep	CDS	31831020	31831187	.	+	0	Parent=Os01t0757800-03
Chr01	irgsp1_rep	CDS	31831269	31831433	.	+	0	Parent=Os01t0757800-03
Chr01	irgsp1_rep	CDS	31831537	31831640	.	+	0	Parent=Os01t0757800-03
Chr01	irgsp1_rep	CDS	31831759	31831878	.	+	1	Parent=Os01t0757800-03
Chr01	irgsp1_rep	CDS	31832086	31832209	.	+	1	Parent=Os01t0757800-03
Chr01	irgsp1_rep	CDS	31833309	31833422	.	+	0	Parent=Os01t0757800-03
Chr01	irgsp1_rep	CDS	31833531	31833722	.	+	0	Parent=Os01t0757800-03
Chr01	irgsp1_rep	CDS	31834070	31834166	.	+	0	Parent=Os01t0757800-03
Chr01	irgsp1_rep	CDS	31834247	31834395	.	+	2	Parent=Os01t0757800-03
Chr01	irgsp1_rep	CDS	31835315	31835402	.	+	0	Parent=Os01t0757800-03
Chr01	irgsp1_rep	CDS	31835481	31835755	.	+	2	Parent=Os01t0757800-03
Chr01	irgsp1_rep	three_prime_UTR	31835756	31835967	.	+	.	Parent=Os01t0757800-03
Chr01	irgsp1_rep	mRNA	31836076	31839761	.	-	.	ID=Os01t0757900-01;Name=Os01t0757900-01;Locus_id=Os01g0757900;Note=Haloacid dehalogenase/epoxide hydrolase domain containing protein.;Transcript_evidence=AK105476 (DDBJ%2C Best hit);ORF_evidence=A2ZXZ9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity (GO:0016787);InterPro=Haloacid dehalogenase/epoxide hydrolase (IPR005833),Haloacid dehalogenase-like hydrolase (IPR005834),HAD-like domain (IPR023214);NIAS_FLcDNA=001-127-A07;TENOR=Os01t0757900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	31839637	31839761	.	-	.	Parent=Os01t0757900-01
Chr01	irgsp1_rep	CDS	31839570	31839636	.	-	0	Parent=Os01t0757900-01
Chr01	irgsp1_rep	CDS	31839258	31839444	.	-	2	Parent=Os01t0757900-01
Chr01	irgsp1_rep	CDS	31839041	31839171	.	-	1	Parent=Os01t0757900-01
Chr01	irgsp1_rep	CDS	31838468	31838673	.	-	2	Parent=Os01t0757900-01
Chr01	irgsp1_rep	three_prime_UTR	31838340	31838467	.	-	.	Parent=Os01t0757900-01
Chr01	irgsp1_rep	three_prime_UTR	31837647	31837801	.	-	.	Parent=Os01t0757900-01
Chr01	irgsp1_rep	three_prime_UTR	31837471	31837560	.	-	.	Parent=Os01t0757900-01
Chr01	irgsp1_rep	three_prime_UTR	31837196	31837335	.	-	.	Parent=Os01t0757900-01
Chr01	irgsp1_rep	three_prime_UTR	31836832	31836924	.	-	.	Parent=Os01t0757900-01
Chr01	irgsp1_rep	three_prime_UTR	31836076	31836593	.	-	.	Parent=Os01t0757900-01
Chr01	irgsp1_rep	mRNA	31840530	31841085	.	-	.	ID=Os01t0758000-00;Name=Os01t0758000-00;Locus_id=Os01g0758000;CGSNL Gene Symbol=HMP6;CGSNL Gene Name=HEAVY METAL-ASSOCIATED PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsHMP6%2C OsHMP06;Oryzabase Gene Name Synonym(s)=Heavy metal-associated protein 6;Note=Similar to copper-binding family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=XP_002892334.1 (RefSeq);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);Oryzabase=23532;TENOR=Os01t0758000-00
Chr01	irgsp1_rep	CDS	31841019	31841085	.	-	0	Parent=Os01t0758000-00
Chr01	irgsp1_rep	CDS	31840530	31840924	.	-	2	Parent=Os01t0758000-00
Chr01	irgsp1_rep	mRNA	31850541	31851617	.	-	.	ID=Os01t0758200-01;Name=Os01t0758200-01;Locus_id=Os01g0758200;CGSNL Gene Symbol=DOF6;CGSNL Gene Name=DNA BINDING WITH ONE FINGER 6;Oryzabase Gene Symbol Synonym(s)=OsDof6%2C Dof6%2C OsDof-6;Oryzabase Gene Name Synonym(s)=Dof zinc factor 6%2C Dof transcription factor 6%2C C2C2-Dof transcription factor;Note=Similar to Dof2 (Fragment).;Transcript_evidence=AK071083 (DDBJ%2C Best hit);ORF_evidence=A2ZY02 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C Dof-type (IPR003851);NIAS_FLcDNA=J023076F14;Oryzabase=8797;Expression=AK071083;TENOR=Os01t0758200-01;KEGG=Os01t0758200-01
Chr01	irgsp1_rep	five_prime_UTR	31851510	31851617	.	-	.	Parent=Os01t0758200-01
Chr01	irgsp1_rep	CDS	31850874	31851509	.	-	0	Parent=Os01t0758200-01
Chr01	irgsp1_rep	three_prime_UTR	31850541	31850873	.	-	.	Parent=Os01t0758200-01
Chr01	irgsp1_rep	mRNA	31859334	31865031	.	-	.	ID=Os01t0758300-01;Name=Os01t0758300-01;Locus_id=Os01g0758300;RAP-DB Gene Symbol Synonym(s)=Osppc3;RAP-DB Gene Name Synonym(s)=Phosphoenolpyruvate carboxylase 3;Oryzabase Gene Symbol Synonym(s)=Osppc3%2C Osppc2%2C ppc3%2Cppc2;Oryzabase Gene Name Synonym(s)=phosphoenolpyruvate carboxylase 3%2C PEPCase 3%2C phosphoenolpyruvate carboxylase 2%2C PEPCase 2;Note=Phosphoenolpyruvate carboxylase;Transcript_evidence=AK101274;ORF_evidence=Q5JLS6;GO=Biological Process: tricarboxylic acid cycle (GO:0006099),Biological Process: carbon fixation (GO:0015977),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphoenolpyruvate carboxylase activity (GO:0008964);InterPro=Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily (IPR015813),Phosphoenolpyruvate carboxylase (IPR021135),Phosphoenolpyruvate carboxylase%2C bacterial/plant-type (IPR022805),Phosphoenolpyruvate carboxylase%2C Lys active site (IPR018129),Phosphoenolpyruvate carboxylase%2C His active site (IPR033129);NIAS_FLcDNA=J033033B07;Manual Curation=October 7%2C 2020;Literature_PMID=25505033,20194759;Oryzabase=18345;Expression=AK101274;TENOR=Os01t0758300-01;KEGG=Os01t0758300-01 (EC:4.1.1.31)
Chr01	irgsp1_rep	five_prime_UTR	31864995	31865031	.	-	.	Parent=Os01t0758300-01
Chr01	irgsp1_rep	five_prime_UTR	31864873	31864911	.	-	.	Parent=Os01t0758300-01
Chr01	irgsp1_rep	CDS	31864705	31864872	.	-	0	Parent=Os01t0758300-01
Chr01	irgsp1_rep	CDS	31863833	31863874	.	-	0	Parent=Os01t0758300-01
Chr01	irgsp1_rep	CDS	31863483	31863706	.	-	0	Parent=Os01t0758300-01
Chr01	irgsp1_rep	CDS	31863157	31863241	.	-	1	Parent=Os01t0758300-01
Chr01	irgsp1_rep	CDS	31862794	31863016	.	-	0	Parent=Os01t0758300-01
Chr01	irgsp1_rep	CDS	31862608	31862711	.	-	2	Parent=Os01t0758300-01
Chr01	irgsp1_rep	CDS	31862436	31862526	.	-	0	Parent=Os01t0758300-01
Chr01	irgsp1_rep	CDS	31861826	31861980	.	-	2	Parent=Os01t0758300-01
Chr01	irgsp1_rep	CDS	31860743	31861741	.	-	0	Parent=Os01t0758300-01
Chr01	irgsp1_rep	CDS	31860149	31860535	.	-	0	Parent=Os01t0758300-01
Chr01	irgsp1_rep	CDS	31859538	31859834	.	-	0	Parent=Os01t0758300-01
Chr01	irgsp1_rep	three_prime_UTR	31859334	31859537	.	-	.	Parent=Os01t0758300-01
Chr01	irgsp1_rep	mRNA	31859333	31863599	.	-	.	ID=Os01t0758300-02;Name=Os01t0758300-02;Locus_id=Os01g0758300;Oryzabase Gene Symbol Synonym(s)=Osppc3%2C Osppc2%2C ppc3%2C ppc2;Oryzabase Gene Name Synonym(s)=phosphoenolpyruvate carboxylase 3%2C PEPCase 3%2C phosphoenolpyruvate carboxylase 2%2C PEPCase 2;Note=Similar to Phosphoenolpyruvate carboxylase%2C housekeeping isozyme.;Transcript_evidence=AK070480 (DDBJ%2C Best hit);ORF_evidence=P29193 (UniProt);GO=Biological Process: tricarboxylic acid cycle (GO:0006099),Biological Process: carbon fixation (GO:0015977),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphoenolpyruvate carboxylase activity (GO:0008964);InterPro=Pyruvate/Phosphoenolpyruvate kinase (IPR015813),Phosphoenolpyruvate carboxylase%2C active site (IPR018129),Phosphoenolpyruvate carboxylase (IPR021135);NIAS_FLcDNA=J023049F03;Oryzabase=18345;Expression=AK070480;TENOR=Os01t0758300-02;KEGG=Os01t0758300-02 (EC:4.1.1.31)
Chr01	irgsp1_rep	five_prime_UTR	31863599	31863599	.	-	.	Parent=Os01t0758300-02
Chr01	irgsp1_rep	CDS	31863483	31863598	.	-	0	Parent=Os01t0758300-02
Chr01	irgsp1_rep	CDS	31863157	31863241	.	-	1	Parent=Os01t0758300-02
Chr01	irgsp1_rep	CDS	31862794	31863016	.	-	0	Parent=Os01t0758300-02
Chr01	irgsp1_rep	CDS	31862608	31862711	.	-	2	Parent=Os01t0758300-02
Chr01	irgsp1_rep	CDS	31862436	31862526	.	-	0	Parent=Os01t0758300-02
Chr01	irgsp1_rep	CDS	31861826	31861980	.	-	2	Parent=Os01t0758300-02
Chr01	irgsp1_rep	CDS	31860743	31861741	.	-	0	Parent=Os01t0758300-02
Chr01	irgsp1_rep	CDS	31860149	31860535	.	-	0	Parent=Os01t0758300-02
Chr01	irgsp1_rep	CDS	31859538	31859834	.	-	0	Parent=Os01t0758300-02
Chr01	irgsp1_rep	three_prime_UTR	31859333	31859537	.	-	.	Parent=Os01t0758300-02
Chr01	irgsp1_rep	mRNA	31859491	31864902	.	+	.	ID=Os01t0758350-00;Name=Os01t0758350-00;Locus_id=Os01g0758350;Note=Hypothetical protein.;Transcript_evidence=tplb0046d07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0758350-00
Chr01	irgsp1_rep	five_prime_UTR	31859491	31859838	.	+	.	Parent=Os01t0758350-00
Chr01	irgsp1_rep	five_prime_UTR	31860155	31860350	.	+	.	Parent=Os01t0758350-00
Chr01	irgsp1_rep	CDS	31860351	31860528	.	+	0	Parent=Os01t0758350-00
Chr01	irgsp1_rep	CDS	31860734	31860804	.	+	2	Parent=Os01t0758350-00
Chr01	irgsp1_rep	three_prime_UTR	31860805	31861741	.	+	.	Parent=Os01t0758350-00
Chr01	irgsp1_rep	three_prime_UTR	31861826	31861980	.	+	.	Parent=Os01t0758350-00
Chr01	irgsp1_rep	three_prime_UTR	31862436	31862523	.	+	.	Parent=Os01t0758350-00
Chr01	irgsp1_rep	three_prime_UTR	31862605	31862708	.	+	.	Parent=Os01t0758350-00
Chr01	irgsp1_rep	three_prime_UTR	31862791	31863016	.	+	.	Parent=Os01t0758350-00
Chr01	irgsp1_rep	three_prime_UTR	31863157	31863255	.	+	.	Parent=Os01t0758350-00
Chr01	irgsp1_rep	three_prime_UTR	31863500	31863871	.	+	.	Parent=Os01t0758350-00
Chr01	irgsp1_rep	three_prime_UTR	31864702	31864902	.	+	.	Parent=Os01t0758350-00
Chr01	irgsp1_rep	mRNA	31870951	31877607	.	-	.	ID=Os01t0758400-01;Name=Os01t0758400-01;Locus_id=Os01g0758400;Note=Similar to Phosphatidate cytidylyltransferase.;Transcript_evidence=AK071777 (DDBJ%2C Best hit);ORF_evidence=B8A9S4 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: phosphatidate cytidylyltransferase activity (GO:0004605),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Phosphatidate cytidylyltransferase (IPR000374),Phosphatidate cytidylyltransferase%2C eukaryota (IPR016720);NIAS_FLcDNA=J023114K10;TENOR=Os01t0758400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	31877382	31877607	.	-	0	Parent=Os01t0758400-01
Chr01	irgsp1_rep	CDS	31876561	31876652	.	-	2	Parent=Os01t0758400-01
Chr01	irgsp1_rep	CDS	31875860	31876113	.	-	0	Parent=Os01t0758400-01
Chr01	irgsp1_rep	CDS	31875577	31875728	.	-	1	Parent=Os01t0758400-01
Chr01	irgsp1_rep	CDS	31874742	31874883	.	-	2	Parent=Os01t0758400-01
Chr01	irgsp1_rep	CDS	31873892	31874048	.	-	1	Parent=Os01t0758400-01
Chr01	irgsp1_rep	CDS	31873628	31873675	.	-	0	Parent=Os01t0758400-01
Chr01	irgsp1_rep	CDS	31873446	31873532	.	-	0	Parent=Os01t0758400-01
Chr01	irgsp1_rep	CDS	31872442	31872570	.	-	0	Parent=Os01t0758400-01
Chr01	irgsp1_rep	CDS	31872289	31872345	.	-	0	Parent=Os01t0758400-01
Chr01	irgsp1_rep	CDS	31871475	31871558	.	-	0	Parent=Os01t0758400-01
Chr01	irgsp1_rep	CDS	31871306	31871395	.	-	0	Parent=Os01t0758400-01
Chr01	irgsp1_rep	three_prime_UTR	31870951	31871305	.	-	.	Parent=Os01t0758400-01
Chr01	irgsp1_rep	mRNA	31870933	31877539	.	-	.	ID=Os01t0758400-02;Name=Os01t0758400-02;Locus_id=Os01g0758400;Note=Similar to Phosphatidate cytidylyltransferase.;Transcript_evidence=AK059301 (DDBJ%2C Best hit);ORF_evidence=B8A9S4 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: phosphatidate cytidylyltransferase activity (GO:0004605),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Phosphatidate cytidylyltransferase (IPR000374),Phosphatidate cytidylyltransferase%2C eukaryota (IPR016720);NIAS_FLcDNA=001-025-F05;TENOR=Os01t0758400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	31877378	31877539	.	-	.	Parent=Os01t0758400-02
Chr01	irgsp1_rep	CDS	31877377	31877377	.	-	0	Parent=Os01t0758400-02
Chr01	irgsp1_rep	CDS	31876561	31876652	.	-	2	Parent=Os01t0758400-02
Chr01	irgsp1_rep	CDS	31875860	31876113	.	-	0	Parent=Os01t0758400-02
Chr01	irgsp1_rep	CDS	31875577	31875728	.	-	1	Parent=Os01t0758400-02
Chr01	irgsp1_rep	CDS	31874742	31874883	.	-	2	Parent=Os01t0758400-02
Chr01	irgsp1_rep	CDS	31873892	31874048	.	-	1	Parent=Os01t0758400-02
Chr01	irgsp1_rep	CDS	31873628	31873675	.	-	0	Parent=Os01t0758400-02
Chr01	irgsp1_rep	CDS	31873446	31873532	.	-	0	Parent=Os01t0758400-02
Chr01	irgsp1_rep	CDS	31872442	31872570	.	-	0	Parent=Os01t0758400-02
Chr01	irgsp1_rep	CDS	31872289	31872345	.	-	0	Parent=Os01t0758400-02
Chr01	irgsp1_rep	CDS	31871475	31871558	.	-	0	Parent=Os01t0758400-02
Chr01	irgsp1_rep	CDS	31871306	31871395	.	-	0	Parent=Os01t0758400-02
Chr01	irgsp1_rep	three_prime_UTR	31870933	31871305	.	-	.	Parent=Os01t0758400-02
Chr01	irgsp1_rep	mRNA	31871036	31877567	.	+	.	ID=Os01t0758450-00;Name=Os01t0758450-00;Locus_id=Os01g0758450;Note=Hypothetical protein.;Transcript_evidence=tplb0040n22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0758450-00
Chr01	irgsp1_rep	five_prime_UTR	31871036	31871378	.	+	.	Parent=Os01t0758450-00
Chr01	irgsp1_rep	five_prime_UTR	31871463	31871558	.	+	.	Parent=Os01t0758450-00
Chr01	irgsp1_rep	five_prime_UTR	31872289	31872333	.	+	.	Parent=Os01t0758450-00
Chr01	irgsp1_rep	five_prime_UTR	31872428	31872503	.	+	.	Parent=Os01t0758450-00
Chr01	irgsp1_rep	CDS	31872504	31872570	.	+	0	Parent=Os01t0758450-00
Chr01	irgsp1_rep	CDS	31873447	31873546	.	+	2	Parent=Os01t0758450-00
Chr01	irgsp1_rep	CDS	31873854	31873908	.	+	1	Parent=Os01t0758450-00
Chr01	irgsp1_rep	three_prime_UTR	31873909	31874050	.	+	.	Parent=Os01t0758450-00
Chr01	irgsp1_rep	three_prime_UTR	31874745	31874896	.	+	.	Parent=Os01t0758450-00
Chr01	irgsp1_rep	three_prime_UTR	31875590	31875713	.	+	.	Parent=Os01t0758450-00
Chr01	irgsp1_rep	three_prime_UTR	31875841	31876125	.	+	.	Parent=Os01t0758450-00
Chr01	irgsp1_rep	three_prime_UTR	31876569	31876667	.	+	.	Parent=Os01t0758450-00
Chr01	irgsp1_rep	three_prime_UTR	31877361	31877567	.	+	.	Parent=Os01t0758450-00
Chr01	irgsp1_rep	mRNA	31889711	31891221	.	-	.	ID=Os01t0758500-01;Name=Os01t0758500-01;Locus_id=Os01g0758500;Note=Similar to predicted protein.;Transcript_evidence=AK107089 (DDBJ%2C Best hit);ORF_evidence=Q8S0I4 (UniProt);NIAS_FLcDNA=002-121-G10;Expression=AK107089;TENOR=Os01t0758500-01;KEGG=Os01t0758500-01
Chr01	irgsp1_rep	five_prime_UTR	31890955	31891221	.	-	.	Parent=Os01t0758500-01
Chr01	irgsp1_rep	CDS	31890367	31890954	.	-	0	Parent=Os01t0758500-01
Chr01	irgsp1_rep	three_prime_UTR	31889711	31890366	.	-	.	Parent=Os01t0758500-01
Chr01	irgsp1_rep	mRNA	31890232	31891198	.	-	.	ID=Os01t0758500-02;Name=Os01t0758500-02;Locus_id=Os01g0758500;Note=Conserved hypothetical protein.;Transcript_evidence=AK062409 (DDBJ%2C Best hit);ORF_evidence=Q8S0I4 (UniProt);NIAS_FLcDNA=001-102-E11;Expression=AK062409;TENOR=Os01t0758500-02;KEGG=Os01t0758500-02
Chr01	irgsp1_rep	five_prime_UTR	31890955	31891198	.	-	.	Parent=Os01t0758500-02
Chr01	irgsp1_rep	CDS	31890810	31890954	.	-	0	Parent=Os01t0758500-02
Chr01	irgsp1_rep	CDS	31890578	31890729	.	-	2	Parent=Os01t0758500-02
Chr01	irgsp1_rep	three_prime_UTR	31890232	31890577	.	-	.	Parent=Os01t0758500-02
Chr01	irgsp1_rep	mRNA	31919494	31922325	.	+	.	ID=Os01t0758900-01;Name=Os01t0758900-01;Locus_id=Os01g0758900;Note=Protein of unknown function DUF688 family protein.;Transcript_evidence=AK067793 (DDBJ%2C Best hit);ORF_evidence=B8A9S5 (UniProt);InterPro=Protein of unknown function DUF688 (IPR007789);NIAS_FLcDNA=J013114H14;Expression=AK067793;TENOR=Os01t0758900-01;KEGG=Os01t0758900-01
Chr01	irgsp1_rep	five_prime_UTR	31919494	31919694	.	+	.	Parent=Os01t0758900-01
Chr01	irgsp1_rep	CDS	31919695	31920828	.	+	0	Parent=Os01t0758900-01
Chr01	irgsp1_rep	CDS	31920940	31921815	.	+	0	Parent=Os01t0758900-01
Chr01	irgsp1_rep	CDS	31921902	31921940	.	+	0	Parent=Os01t0758900-01
Chr01	irgsp1_rep	three_prime_UTR	31921941	31922325	.	+	.	Parent=Os01t0758900-01
Chr01	irgsp1_rep	mRNA	31919694	31922269	.	-	.	ID=Os01t0758950-00;Name=Os01t0758950-00;Locus_id=Os01g0758950;Note=Hypothetical protein.;Transcript_evidence=tplb0057j18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0758950-00
Chr01	irgsp1_rep	five_prime_UTR	31921902	31922269	.	-	.	Parent=Os01t0758950-00
Chr01	irgsp1_rep	five_prime_UTR	31920920	31921815	.	-	.	Parent=Os01t0758950-00
Chr01	irgsp1_rep	five_prime_UTR	31920610	31920817	.	-	.	Parent=Os01t0758950-00
Chr01	irgsp1_rep	CDS	31920106	31920609	.	-	0	Parent=Os01t0758950-00
Chr01	irgsp1_rep	three_prime_UTR	31919694	31920105	.	-	.	Parent=Os01t0758950-00
Chr01	irgsp1_rep	mRNA	31925866	31926934	.	+	.	ID=Os01t0759000-01;Name=Os01t0759000-01;Locus_id=Os01g0759000;Note=Conserved hypothetical protein.;Transcript_evidence=AK111031 (DDBJ%2C Best hit);ORF_evidence=Q94DU0 (UniProt);NIAS_FLcDNA=002-174-H09;Expression=AK111031;TENOR=Os01t0759000-01;KEGG=Os01t0759000-01
Chr01	irgsp1_rep	five_prime_UTR	31925866	31925937	.	+	.	Parent=Os01t0759000-01
Chr01	irgsp1_rep	CDS	31925938	31926651	.	+	0	Parent=Os01t0759000-01
Chr01	irgsp1_rep	CDS	31926732	31926824	.	+	0	Parent=Os01t0759000-01
Chr01	irgsp1_rep	three_prime_UTR	31926825	31926934	.	+	.	Parent=Os01t0759000-01
Chr01	irgsp1_rep	mRNA	31927136	31930005	.	-	.	ID=Os01t0759100-01;Name=Os01t0759100-01;Locus_id=Os01g0759100;Oryzabase Gene Symbol Synonym(s)=OsTLP12%2C OsTLP2%2C OsFbox039%2C OsFbox39%2C Os_F0683;Oryzabase Gene Name Synonym(s)=tubby-like protein 12%2C tubby-like protein 2%2C F-box protein 39;Note=Tubby family protein.;Transcript_evidence=AK106853 (DDBJ%2C Best hit);ORF_evidence=Q94DT9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Tubby%2C C-terminal (IPR000007),F-box domain%2C cyclin-like (IPR001810);NIAS_FLcDNA=002-118-B03;Oryzabase=14714;Expression=AK106853;TENOR=Os01t0759100-01;KEGG=Os01t0759100-01
Chr01	irgsp1_rep	five_prime_UTR	31929941	31930005	.	-	.	Parent=Os01t0759100-01
Chr01	irgsp1_rep	CDS	31929599	31929940	.	-	0	Parent=Os01t0759100-01
Chr01	irgsp1_rep	CDS	31929029	31929116	.	-	0	Parent=Os01t0759100-01
Chr01	irgsp1_rep	CDS	31928381	31928510	.	-	2	Parent=Os01t0759100-01
Chr01	irgsp1_rep	CDS	31927698	31928244	.	-	1	Parent=Os01t0759100-01
Chr01	irgsp1_rep	three_prime_UTR	31927136	31927697	.	-	.	Parent=Os01t0759100-01
Chr01	irgsp1_rep	mRNA	31938559	31940184	.	-	.	ID=Os01t0759200-01;Name=Os01t0759200-01;Locus_id=Os01g0759200;RAP-DB Gene Symbol Synonym(s)=OsCIPK30;RAP-DB Gene Name Synonym(s)=CBL-interaction protein kinase 30%2C calcineurin B-like protein-interaction protein kinase 30;CGSNL Gene Symbol=CIPK30;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 30;Oryzabase Gene Symbol Synonym(s)=OsCIPK30;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 30;Note=CBL(calcineurin B-like proteins)-interaction protein kinase protein%2C Resistance to Rice stripe virus (RSV) disease;Transcript_evidence=AK100202,AK069231;ORF_evidence=Q5JLQ9;GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),Protein kinase domain (IPR000719),NAF/FISL domain (IPR018451),NAF domain (IPR004041),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J023040M01,J023013G02;Manual Curation=December 13%2C 2017;Literature_PMID=29225594;Oryzabase=7418;Expression=AK100202;TENOR=Os01t0759200-01;KEGG=Os01t0759200-01 (EC:2.7.11.1)
Chr01	irgsp1_rep	five_prime_UTR	31940066	31940184	.	-	.	Parent=Os01t0759200-01
Chr01	irgsp1_rep	CDS	31938635	31940065	.	-	0	Parent=Os01t0759200-01
Chr01	irgsp1_rep	three_prime_UTR	31938559	31938634	.	-	.	Parent=Os01t0759200-01
Chr01	irgsp1_rep	mRNA	31943529	31948580	.	-	.	ID=Os01t0759400-02;Name=Os01t0759400-02;Locus_id=Os01g0759400;CGSNL Gene Symbol=PK7;CGSNL Gene Name=PROTEIN KINASE 7;Oryzabase Gene Symbol Synonym(s)=OsPK7%2C OsPK07%2C OsCIPK12%2C CIPK12;Oryzabase Gene Name Synonym(s)=protein kinase 7%2C CBL-interacting protein kinase 12%2C CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 12;Note=OsPK7.;Transcript_evidence=AK101442 (DDBJ%2C Best hit),AK102618 (DDBJ%2C Best hit);ORF_evidence=Q5JLS2 (UniProt);NIAS_FLcDNA=J033039E18,J033099G21;Oryzabase=6259;Expression=AK101442;TENOR=Os01t0759400-02;KEGG=Os01t0759400-02 (EC:2.7.11.11)
Chr01	irgsp1_rep	five_prime_UTR	31948492	31948580	.	-	.	Parent=Os01t0759400-02
Chr01	irgsp1_rep	CDS	31946933	31948491	.	-	0	Parent=Os01t0759400-02
Chr01	irgsp1_rep	CDS	31944806	31944869	.	-	1	Parent=Os01t0759400-02
Chr01	irgsp1_rep	three_prime_UTR	31943529	31944805	.	-	.	Parent=Os01t0759400-02
Chr01	irgsp1_rep	mRNA	31947015	31948357	.	+	.	ID=Os01t0759550-00;Name=Os01t0759550-00;Locus_id=Os01g0759550;Note=Hypothetical protein.;Transcript_evidence=tplb0042a18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0759550-00
Chr01	irgsp1_rep	five_prime_UTR	31947015	31947016	.	+	.	Parent=Os01t0759550-00
Chr01	irgsp1_rep	CDS	31947017	31947388	.	+	0	Parent=Os01t0759550-00
Chr01	irgsp1_rep	CDS	31947474	31947572	.	+	0	Parent=Os01t0759550-00
Chr01	irgsp1_rep	three_prime_UTR	31947573	31948357	.	+	.	Parent=Os01t0759550-00
Chr01	irgsp1_rep	mRNA	31969296	31973706	.	+	.	ID=Os01t0759700-01;Name=Os01t0759700-01;Locus_id=Os01g0759700;Note=Similar to transcription regulator.;Transcript_evidence=AK101627 (DDBJ%2C Best hit);ORF_evidence=NP_001150202.1 (RefSeq);NIAS_FLcDNA=J033053D02;TENOR=Os01t0759700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	31969296	31969402	.	+	.	Parent=Os01t0759700-01
Chr01	irgsp1_rep	CDS	31969403	31969831	.	+	0	Parent=Os01t0759700-01
Chr01	irgsp1_rep	CDS	31969916	31969970	.	+	0	Parent=Os01t0759700-01
Chr01	irgsp1_rep	CDS	31971052	31971078	.	+	2	Parent=Os01t0759700-01
Chr01	irgsp1_rep	CDS	31971147	31971223	.	+	2	Parent=Os01t0759700-01
Chr01	irgsp1_rep	three_prime_UTR	31971224	31971299	.	+	.	Parent=Os01t0759700-01
Chr01	irgsp1_rep	three_prime_UTR	31971822	31972023	.	+	.	Parent=Os01t0759700-01
Chr01	irgsp1_rep	three_prime_UTR	31972535	31972654	.	+	.	Parent=Os01t0759700-01
Chr01	irgsp1_rep	three_prime_UTR	31972739	31972842	.	+	.	Parent=Os01t0759700-01
Chr01	irgsp1_rep	three_prime_UTR	31972924	31973030	.	+	.	Parent=Os01t0759700-01
Chr01	irgsp1_rep	three_prime_UTR	31973468	31973706	.	+	.	Parent=Os01t0759700-01
Chr01	irgsp1_rep	mRNA	31969296	31973706	.	+	.	ID=Os01t0759700-02;Name=Os01t0759700-02;Locus_id=Os01g0759700;Note=Similar to transcription regulator.;Transcript_evidence=AK072034 (DDBJ%2C Best hit);ORF_evidence=NP_001150202.1 (RefSeq);InterPro=HCNGP-like (IPR012479);NIAS_FLcDNA=J013102B21;Expression=AK072034;TENOR=Os01t0759700-02;KEGG=Os01t0759700-02
Chr01	irgsp1_rep	five_prime_UTR	31969296	31969402	.	+	.	Parent=Os01t0759700-02
Chr01	irgsp1_rep	CDS	31969403	31969831	.	+	0	Parent=Os01t0759700-02
Chr01	irgsp1_rep	CDS	31969916	31969970	.	+	0	Parent=Os01t0759700-02
Chr01	irgsp1_rep	CDS	31971052	31971299	.	+	2	Parent=Os01t0759700-02
Chr01	irgsp1_rep	CDS	31971822	31972023	.	+	0	Parent=Os01t0759700-02
Chr01	irgsp1_rep	CDS	31972535	31972654	.	+	2	Parent=Os01t0759700-02
Chr01	irgsp1_rep	CDS	31972739	31972842	.	+	2	Parent=Os01t0759700-02
Chr01	irgsp1_rep	CDS	31972924	31973030	.	+	0	Parent=Os01t0759700-02
Chr01	irgsp1_rep	CDS	31973468	31973534	.	+	1	Parent=Os01t0759700-02
Chr01	irgsp1_rep	three_prime_UTR	31973535	31973706	.	+	.	Parent=Os01t0759700-02
Chr01	irgsp1_rep	mRNA	31976419	31979916	.	-	.	ID=Os01t0759800-00;Name=Os01t0759800-00;Locus_id=Os01g0759800;Note=Hypothetical protein.;Transcript_evidence=tplb0035n15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0759800-00
Chr01	irgsp1_rep	five_prime_UTR	31979715	31979916	.	-	.	Parent=Os01t0759800-00
Chr01	irgsp1_rep	five_prime_UTR	31979199	31979375	.	-	.	Parent=Os01t0759800-00
Chr01	irgsp1_rep	five_prime_UTR	31979040	31979112	.	-	.	Parent=Os01t0759800-00
Chr01	irgsp1_rep	five_prime_UTR	31978821	31978941	.	-	.	Parent=Os01t0759800-00
Chr01	irgsp1_rep	five_prime_UTR	31978551	31978673	.	-	.	Parent=Os01t0759800-00
Chr01	irgsp1_rep	five_prime_UTR	31978358	31978472	.	-	.	Parent=Os01t0759800-00
Chr01	irgsp1_rep	five_prime_UTR	31977841	31977892	.	-	.	Parent=Os01t0759800-00
Chr01	irgsp1_rep	CDS	31977672	31977840	.	-	0	Parent=Os01t0759800-00
Chr01	irgsp1_rep	CDS	31977369	31977450	.	-	2	Parent=Os01t0759800-00
Chr01	irgsp1_rep	CDS	31977180	31977210	.	-	1	Parent=Os01t0759800-00
Chr01	irgsp1_rep	three_prime_UTR	31977106	31977179	.	-	.	Parent=Os01t0759800-00
Chr01	irgsp1_rep	three_prime_UTR	31976778	31976973	.	-	.	Parent=Os01t0759800-00
Chr01	irgsp1_rep	three_prime_UTR	31976419	31976583	.	-	.	Parent=Os01t0759800-00
Chr01	irgsp1_rep	mRNA	31976840	31980051	.	+	.	ID=Os01t0759900-01;Name=Os01t0759900-01;Locus_id=Os01g0759900;Note=Similar to Permease 1.;Transcript_evidence=AK103020 (DDBJ%2C Best hit);ORF_evidence=NP_001152037.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Xanthine/uracil/vitamin C permease (IPR006043);NIAS_FLcDNA=J033116O12;Expression=AK103020;TENOR=Os01t0759900-01;KEGG=Os01t0759900-01
Chr01	irgsp1_rep	CDS	31976840	31976977	.	+	0	Parent=Os01t0759900-01
Chr01	irgsp1_rep	CDS	31977109	31977209	.	+	0	Parent=Os01t0759900-01
Chr01	irgsp1_rep	CDS	31977368	31977443	.	+	1	Parent=Os01t0759900-01
Chr01	irgsp1_rep	CDS	31977569	31977628	.	+	0	Parent=Os01t0759900-01
Chr01	irgsp1_rep	CDS	31977721	31977905	.	+	0	Parent=Os01t0759900-01
Chr01	irgsp1_rep	CDS	31978367	31978463	.	+	1	Parent=Os01t0759900-01
Chr01	irgsp1_rep	CDS	31978546	31978632	.	+	0	Parent=Os01t0759900-01
Chr01	irgsp1_rep	CDS	31978723	31978781	.	+	0	Parent=Os01t0759900-01
Chr01	irgsp1_rep	CDS	31978852	31978943	.	+	1	Parent=Os01t0759900-01
Chr01	irgsp1_rep	CDS	31979042	31979119	.	+	2	Parent=Os01t0759900-01
Chr01	irgsp1_rep	CDS	31979205	31979365	.	+	2	Parent=Os01t0759900-01
Chr01	irgsp1_rep	CDS	31979706	31979918	.	+	0	Parent=Os01t0759900-01
Chr01	irgsp1_rep	three_prime_UTR	31979919	31980051	.	+	.	Parent=Os01t0759900-01
Chr01	irgsp1_rep	mRNA	31981933	31982776	.	+	.	ID=Os01t0760000-01;Name=Os01t0760000-01;Locus_id=Os01g0760000;Note=Similar to Dynein light chain.;Transcript_evidence=AK120226 (DDBJ%2C Best hit);ORF_evidence=Q09IX9 (UniProt);GO=Biological Process: microtubule-based process (GO:0007017),Cellular Component: microtubule associated complex (GO:0005875);InterPro=Dynein light chain%2C type 1/2 (IPR001372);NIAS_FLcDNA=J013042E04;Oryzabase=20201;TENOR=Os01t0760000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	31981933	31982002	.	+	.	Parent=Os01t0760000-01
Chr01	irgsp1_rep	CDS	31982003	31982251	.	+	0	Parent=Os01t0760000-01
Chr01	irgsp1_rep	three_prime_UTR	31982252	31982776	.	+	.	Parent=Os01t0760000-01
Chr01	irgsp1_rep	mRNA	31983048	31983113	.	-	.	ID=Os01t0760150-00;Name=Os01t0760150-00;Locus_id=Os01g0760150;Note=Non-protein coding transcript.;Transcript_evidence=EU943375 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0760150-00
Chr01	irgsp1_rep	exon	31983048	31983113	.	-	.	Parent=Os01t0760150-00
Chr01	irgsp1_rep	mRNA	31986501	31989198	.	+	.	ID=Os01t0760300-01;Name=Os01t0760300-01;Locus_id=Os01g0760300;RAP-DB Gene Symbol Synonym(s)=OsRopGEF8;RAP-DB Gene Name Synonym(s)=Guanine nucleotide exchange factor for ROP 8;CGSNL Gene Symbol=ROPGEF8;CGSNL Gene Name=ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 8;Oryzabase Gene Symbol Synonym(s)=Os RopGEF8%2C OsRopGEF8%2C RopGEF8;Oryzabase Gene Name Synonym(s)=GEF for ROP 8%2C guanine nucleotide exchange factor for Rop 8%2C Rop-specific GEF8%2C Rop-specific guanine nucleotide exchange factor 8;Note=Guanine nucleotide exchange factor for Rho-type GTPase of plant (ROP/Rac)%2C Pollen germination%2C Pollen tube growth;Transcript_evidence=AK070142;ORF_evidence=Q94DS9;GO=Molecular Function: Rho guanyl-nucleotide exchange factor activity (GO:0005089);InterPro=PRONE domain (IPR005512);NIAS_FLcDNA=J023042H02;Manual Curation=March 9%2C 2020;Literature_PMID=32131749;Oryzabase=11450;Expression=AK070142;TENOR=Os01t0760300-01;KEGG=Os01t0760300-01;Subcellular location=cytosol (GO:0005829), plasma membrane (GO:0005886)
Chr01	irgsp1_rep	five_prime_UTR	31986501	31986718	.	+	.	Parent=Os01t0760300-01
Chr01	irgsp1_rep	five_prime_UTR	31986837	31986862	.	+	.	Parent=Os01t0760300-01
Chr01	irgsp1_rep	CDS	31986863	31987079	.	+	0	Parent=Os01t0760300-01
Chr01	irgsp1_rep	CDS	31987170	31987286	.	+	2	Parent=Os01t0760300-01
Chr01	irgsp1_rep	CDS	31987380	31987534	.	+	2	Parent=Os01t0760300-01
Chr01	irgsp1_rep	CDS	31987652	31987726	.	+	0	Parent=Os01t0760300-01
Chr01	irgsp1_rep	CDS	31987822	31988088	.	+	0	Parent=Os01t0760300-01
Chr01	irgsp1_rep	CDS	31988178	31988498	.	+	0	Parent=Os01t0760300-01
Chr01	irgsp1_rep	CDS	31988600	31989013	.	+	0	Parent=Os01t0760300-01
Chr01	irgsp1_rep	three_prime_UTR	31989014	31989198	.	+	.	Parent=Os01t0760300-01
Chr01	irgsp1_rep	mRNA	31992093	31996447	.	-	.	ID=Os01t0760400-01;Name=Os01t0760400-01;Locus_id=Os01g0760400;Note=Toll-Interleukin receptor domain containing protein.;Transcript_evidence=AK101847 (DDBJ%2C Best hit);ORF_evidence=XP_002303599.1 (RefSeq);GO=Biological Process: signal transduction (GO:0007165),Cellular Component: intracellular (GO:0005622),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: protein binding (GO:0005515),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ADP binding (GO:0043531);InterPro=Toll/interleukin-1 receptor homology (TIR) domain (IPR000157),NB-ARC (IPR002182),ATPase%2C AAA+ type%2C core (IPR003593);NIAS_FLcDNA=J033069J04;Expression=AK101847;TENOR=Os01t0760400-01;KEGG=Os01t0760400-01
Chr01	irgsp1_rep	five_prime_UTR	31995986	31996447	.	-	.	Parent=Os01t0760400-01
Chr01	irgsp1_rep	five_prime_UTR	31995206	31995280	.	-	.	Parent=Os01t0760400-01
Chr01	irgsp1_rep	CDS	31992197	31995205	.	-	0	Parent=Os01t0760400-01
Chr01	irgsp1_rep	three_prime_UTR	31992093	31992196	.	-	.	Parent=Os01t0760400-01
Chr01	irgsp1_rep	mRNA	31998877	32003690	.	-	.	ID=Os01t0760600-01;Name=Os01t0760600-01;Locus_id=Os01g0760600;Oryzabase Gene Name Synonym(s)=Aspartate aminotransferase;Note=Aspartate aminotransferase%2C cytoplasmic (EC 2.6.1.1) (Transaminase A).;Transcript_evidence=AK103586 (DDBJ%2C Best hit);ORF_evidence=A2WVA6 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transaminase activity (GO:0008483),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aspartate/other aminotransferase (IPR000796),Aminotransferases%2C class-I%2C pyridoxal-phosphate-binding site (IPR004838),Aminotransferase%2C class I/classII (IPR004839),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J033133B14;Oryzabase=16688;TENOR=Os01t0760600-01
Chr01	irgsp1_rep	five_prime_UTR	32003408	32003690	.	-	.	Parent=Os01t0760600-01
Chr01	irgsp1_rep	CDS	32003189	32003407	.	-	0	Parent=Os01t0760600-01
Chr01	irgsp1_rep	CDS	32002988	32003059	.	-	0	Parent=Os01t0760600-01
Chr01	irgsp1_rep	CDS	32002824	32002885	.	-	0	Parent=Os01t0760600-01
Chr01	irgsp1_rep	CDS	32002071	32002154	.	-	1	Parent=Os01t0760600-01
Chr01	irgsp1_rep	CDS	32001791	32001890	.	-	1	Parent=Os01t0760600-01
Chr01	irgsp1_rep	CDS	32001577	32001697	.	-	0	Parent=Os01t0760600-01
Chr01	irgsp1_rep	CDS	32001306	32001469	.	-	2	Parent=Os01t0760600-01
Chr01	irgsp1_rep	CDS	32000959	32001096	.	-	0	Parent=Os01t0760600-01
Chr01	irgsp1_rep	CDS	32000337	32000458	.	-	0	Parent=Os01t0760600-01
Chr01	irgsp1_rep	CDS	32000113	32000207	.	-	1	Parent=Os01t0760600-01
Chr01	irgsp1_rep	CDS	31999374	31999494	.	-	2	Parent=Os01t0760600-01
Chr01	irgsp1_rep	CDS	31999099	31999183	.	-	1	Parent=Os01t0760600-01
Chr01	irgsp1_rep	three_prime_UTR	31998877	31999098	.	-	.	Parent=Os01t0760600-01
Chr01	irgsp1_rep	mRNA	31998877	32003466	.	-	.	ID=Os01t0760600-02;Name=Os01t0760600-02;Locus_id=Os01g0760600;Oryzabase Gene Name Synonym(s)=Aspartate aminotransferase;Note=Aspartate aminotransferase%2C cytoplasmic (EC 2.6.1.1) (Transaminase A).;Transcript_evidence=AK067557 (DDBJ%2C Best hit);ORF_evidence=A2WVA6 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transaminase activity (GO:0008483),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aspartate/other aminotransferase (IPR000796),Aminotransferases%2C class-I%2C pyridoxal-phosphate-binding site (IPR004838),Aminotransferase%2C class I/classII (IPR004839),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J013112H20;Oryzabase=16688;TENOR=Os01t0760600-02
Chr01	irgsp1_rep	five_prime_UTR	32003408	32003466	.	-	.	Parent=Os01t0760600-02
Chr01	irgsp1_rep	CDS	32003189	32003407	.	-	0	Parent=Os01t0760600-02
Chr01	irgsp1_rep	CDS	32002988	32003059	.	-	0	Parent=Os01t0760600-02
Chr01	irgsp1_rep	CDS	32002824	32002885	.	-	0	Parent=Os01t0760600-02
Chr01	irgsp1_rep	CDS	32002071	32002154	.	-	1	Parent=Os01t0760600-02
Chr01	irgsp1_rep	CDS	32001791	32001890	.	-	1	Parent=Os01t0760600-02
Chr01	irgsp1_rep	CDS	32001577	32001697	.	-	0	Parent=Os01t0760600-02
Chr01	irgsp1_rep	CDS	32001306	32001469	.	-	2	Parent=Os01t0760600-02
Chr01	irgsp1_rep	CDS	32000959	32001096	.	-	0	Parent=Os01t0760600-02
Chr01	irgsp1_rep	CDS	32000337	32000458	.	-	0	Parent=Os01t0760600-02
Chr01	irgsp1_rep	CDS	32000113	32000207	.	-	1	Parent=Os01t0760600-02
Chr01	irgsp1_rep	CDS	31999374	31999494	.	-	2	Parent=Os01t0760600-02
Chr01	irgsp1_rep	CDS	31999099	31999183	.	-	1	Parent=Os01t0760600-02
Chr01	irgsp1_rep	three_prime_UTR	31998877	31999098	.	-	.	Parent=Os01t0760600-02
Chr01	irgsp1_rep	mRNA	31998877	32003425	.	-	.	ID=Os01t0760600-03;Name=Os01t0760600-03;Locus_id=Os01g0760600;Oryzabase Gene Name Synonym(s)=Aspartate aminotransferase;Note=Aspartate aminotransferase%2C cytoplasmic (EC 2.6.1.1) (Transaminase A).;Transcript_evidence=AK099338 (DDBJ%2C Best hit);ORF_evidence=A2WVA6 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transaminase activity (GO:0008483),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aspartate/other aminotransferase (IPR000796),Aminotransferases%2C class-I%2C pyridoxal-phosphate-binding site (IPR004838),Aminotransferase%2C class I/classII (IPR004839),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J033026J06;Oryzabase=16688;TENOR=Os01t0760600-03
Chr01	irgsp1_rep	five_prime_UTR	32003408	32003425	.	-	.	Parent=Os01t0760600-03
Chr01	irgsp1_rep	CDS	32003189	32003407	.	-	0	Parent=Os01t0760600-03
Chr01	irgsp1_rep	CDS	32002988	32003059	.	-	0	Parent=Os01t0760600-03
Chr01	irgsp1_rep	CDS	32002824	32002885	.	-	0	Parent=Os01t0760600-03
Chr01	irgsp1_rep	CDS	32002071	32002154	.	-	1	Parent=Os01t0760600-03
Chr01	irgsp1_rep	CDS	32001791	32001890	.	-	1	Parent=Os01t0760600-03
Chr01	irgsp1_rep	CDS	32001577	32001697	.	-	0	Parent=Os01t0760600-03
Chr01	irgsp1_rep	CDS	32001306	32001469	.	-	2	Parent=Os01t0760600-03
Chr01	irgsp1_rep	CDS	32000959	32001096	.	-	0	Parent=Os01t0760600-03
Chr01	irgsp1_rep	CDS	32000337	32000458	.	-	0	Parent=Os01t0760600-03
Chr01	irgsp1_rep	CDS	32000113	32000207	.	-	1	Parent=Os01t0760600-03
Chr01	irgsp1_rep	CDS	31999374	31999494	.	-	2	Parent=Os01t0760600-03
Chr01	irgsp1_rep	CDS	31999099	31999183	.	-	1	Parent=Os01t0760600-03
Chr01	irgsp1_rep	three_prime_UTR	31998877	31999098	.	-	.	Parent=Os01t0760600-03
Chr01	irgsp1_rep	mRNA	31998877	32003326	.	-	.	ID=Os01t0760600-04;Name=Os01t0760600-04;Locus_id=Os01g0760600;Oryzabase Gene Name Synonym(s)=Aspartate aminotransferase;Note=Similar to Aspartate aminotransferase.;Transcript_evidence=AK103133 (DDBJ%2C Best hit),AK104829 (DDBJ%2C Best hit);ORF_evidence=A2WVA6 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transaminase activity (GO:0008483),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aspartate/other aminotransferase (IPR000796),Aminotransferases%2C class-I%2C pyridoxal-phosphate-binding site (IPR004838),Aminotransferase%2C class I/classII (IPR004839),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J033120D06,001-041-H04;Oryzabase=16688;TENOR=Os01t0760600-04
Chr01	irgsp1_rep	five_prime_UTR	32003249	32003326	.	-	.	Parent=Os01t0760600-04
Chr01	irgsp1_rep	CDS	32003189	32003248	.	-	0	Parent=Os01t0760600-04
Chr01	irgsp1_rep	CDS	32002988	32003059	.	-	0	Parent=Os01t0760600-04
Chr01	irgsp1_rep	CDS	32002824	32002885	.	-	0	Parent=Os01t0760600-04
Chr01	irgsp1_rep	CDS	32002071	32002154	.	-	1	Parent=Os01t0760600-04
Chr01	irgsp1_rep	CDS	32001791	32001890	.	-	1	Parent=Os01t0760600-04
Chr01	irgsp1_rep	CDS	32001577	32001697	.	-	0	Parent=Os01t0760600-04
Chr01	irgsp1_rep	CDS	32001306	32001469	.	-	2	Parent=Os01t0760600-04
Chr01	irgsp1_rep	CDS	32000959	32001096	.	-	0	Parent=Os01t0760600-04
Chr01	irgsp1_rep	CDS	32000337	32000458	.	-	0	Parent=Os01t0760600-04
Chr01	irgsp1_rep	CDS	32000113	32000207	.	-	1	Parent=Os01t0760600-04
Chr01	irgsp1_rep	CDS	31999374	31999494	.	-	2	Parent=Os01t0760600-04
Chr01	irgsp1_rep	CDS	31999099	31999183	.	-	1	Parent=Os01t0760600-04
Chr01	irgsp1_rep	three_prime_UTR	31998877	31999098	.	-	.	Parent=Os01t0760600-04
Chr01	irgsp1_rep	mRNA	31998916	32001471	.	+	.	ID=Os01t0760701-00;Name=Os01t0760701-00;Locus_id=Os01g0760701;Note=Hypothetical gene.;Transcript_evidence=BT016854 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0760701-00;KEGG=Os01t0760701-00
Chr01	irgsp1_rep	five_prime_UTR	31998916	31999050	.	+	.	Parent=Os01t0760701-00
Chr01	irgsp1_rep	CDS	31999051	31999182	.	+	0	Parent=Os01t0760701-00
Chr01	irgsp1_rep	CDS	31999373	31999480	.	+	0	Parent=Os01t0760701-00
Chr01	irgsp1_rep	CDS	32000103	32000203	.	+	0	Parent=Os01t0760701-00
Chr01	irgsp1_rep	CDS	32000333	32000375	.	+	1	Parent=Os01t0760701-00
Chr01	irgsp1_rep	three_prime_UTR	32000376	32000470	.	+	.	Parent=Os01t0760701-00
Chr01	irgsp1_rep	three_prime_UTR	32000970	32001159	.	+	.	Parent=Os01t0760701-00
Chr01	irgsp1_rep	three_prime_UTR	32001283	32001471	.	+	.	Parent=Os01t0760701-00
Chr01	irgsp1_rep	mRNA	32006374	32009784	.	-	.	ID=Os01t0760800-01;Name=Os01t0760800-01;Locus_id=Os01g0760800;RAP-DB Gene Symbol Synonym(s)=OsGL2;RAP-DB Gene Name Synonym(s)=GLABRA2;CGSNL Gene Symbol=ROC9;CGSNL Gene Name=RICE OUTMOST CELL-SPECIFIC GENE 9;Oryzabase Gene Symbol Synonym(s)=Roc9(t)%2C Roc9%2C GL2-9%2C OsGL2%2C GL2;Oryzabase Gene Name Synonym(s)=Rice outmost cell -specific gene 9(t)%2C Rice outermost cell-specific gene-9%2C Homeobox-leucine zipper protein ROC9%2C Homeodomain transcription factor ROC9%2C HD-ZIP protein ROC9%2C Protein RICE OUTERMOST CELL-SPECIFIC 9%2C GLABRA 2-like homeobox protein 9%2C Rice ooutmost cell-specific gene9%2C GLABRA2%2C GLABRA 2;Note=Homolog of Arabidopsis GLABRA2 (GL2)%2C GL2-type homeodomain protein;Transcript_evidence=AB101652 (truncated),Inferred from literature;ORF_evidence=Q5JMF3;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: lipid binding (GO:0008289),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox-like domain superfamily (IPR009057),START-like domain superfamily (IPR023393),Homeobox domain (IPR001356),START domain (IPR002913),Homeobox%2C conserved site (IPR017970);Manual Curation=January 24%2C 2020;Literature_PMID=31768124,26758286;Oryzabase=20552;Expression=AB101652;TENOR=Os01t0760800-00;KEGG=Os01t0760800-00
Chr01	irgsp1_rep	CDS	32009716	32009784	.	-	0	Parent=Os01t0760800-01
Chr01	irgsp1_rep	CDS	32009344	32009609	.	-	0	Parent=Os01t0760800-01
Chr01	irgsp1_rep	CDS	32008982	32009099	.	-	1	Parent=Os01t0760800-01
Chr01	irgsp1_rep	CDS	32008160	32008876	.	-	0	Parent=Os01t0760800-01
Chr01	irgsp1_rep	CDS	32007969	32008070	.	-	0	Parent=Os01t0760800-01
Chr01	irgsp1_rep	CDS	32007672	32007884	.	-	0	Parent=Os01t0760800-01
Chr01	irgsp1_rep	CDS	32007412	32007586	.	-	0	Parent=Os01t0760800-01
Chr01	irgsp1_rep	CDS	32007037	32007326	.	-	2	Parent=Os01t0760800-01
Chr01	irgsp1_rep	CDS	32006870	32006956	.	-	0	Parent=Os01t0760800-01
Chr01	irgsp1_rep	CDS	32006374	32006787	.	-	0	Parent=Os01t0760800-01
Chr01	irgsp1_rep	mRNA	32010478	32013222	.	-	.	ID=Os01t0760900-01;Name=Os01t0760900-01;Locus_id=Os01g0760900;Note=Conserved hypothetical protein.;Transcript_evidence=AK107573 (DDBJ%2C Best hit);ORF_evidence=Q5JMF2 (UniProt);NIAS_FLcDNA=002-130-D05;Expression=AK107573;TENOR=Os01t0760900-01;KEGG=Os01t0760900-01
Chr01	irgsp1_rep	five_prime_UTR	32013126	32013222	.	-	.	Parent=Os01t0760900-01
Chr01	irgsp1_rep	CDS	32012997	32013125	.	-	0	Parent=Os01t0760900-01
Chr01	irgsp1_rep	CDS	32012813	32012895	.	-	0	Parent=Os01t0760900-01
Chr01	irgsp1_rep	CDS	32012557	32012704	.	-	1	Parent=Os01t0760900-01
Chr01	irgsp1_rep	CDS	32012043	32012142	.	-	0	Parent=Os01t0760900-01
Chr01	irgsp1_rep	CDS	32011874	32011913	.	-	2	Parent=Os01t0760900-01
Chr01	irgsp1_rep	CDS	32011687	32011778	.	-	1	Parent=Os01t0760900-01
Chr01	irgsp1_rep	CDS	32011081	32011160	.	-	2	Parent=Os01t0760900-01
Chr01	irgsp1_rep	CDS	32010820	32010912	.	-	0	Parent=Os01t0760900-01
Chr01	irgsp1_rep	three_prime_UTR	32010478	32010819	.	-	.	Parent=Os01t0760900-01
Chr01	irgsp1_rep	mRNA	32014488	32016245	.	+	.	ID=Os01t0761000-01;Name=Os01t0761000-01;Locus_id=Os01g0761000;Note=Conserved hypothetical protein.;Transcript_evidence=AK241680 (DDBJ%2C Best hit);ORF_evidence=NP_001044320.2 (RefSeq);NIAS_FLcDNA=J065193H05;TENOR=Os01t0761000-01;KEGG=Os01t0761000-01
Chr01	irgsp1_rep	five_prime_UTR	32014488	32014559	.	+	.	Parent=Os01t0761000-01
Chr01	irgsp1_rep	CDS	32014560	32014677	.	+	0	Parent=Os01t0761000-01
Chr01	irgsp1_rep	CDS	32014807	32014901	.	+	2	Parent=Os01t0761000-01
Chr01	irgsp1_rep	CDS	32015185	32015271	.	+	0	Parent=Os01t0761000-01
Chr01	irgsp1_rep	CDS	32015362	32015424	.	+	0	Parent=Os01t0761000-01
Chr01	irgsp1_rep	CDS	32015506	32015543	.	+	0	Parent=Os01t0761000-01
Chr01	irgsp1_rep	CDS	32015980	32016034	.	+	1	Parent=Os01t0761000-01
Chr01	irgsp1_rep	three_prime_UTR	32016035	32016245	.	+	.	Parent=Os01t0761000-01
Chr01	irgsp1_rep	mRNA	32016706	32022401	.	-	.	ID=Os01t0761100-01;Name=Os01t0761100-01;Locus_id=Os01g0761100;Note=Tesmin/TSO1-like%2C CXC domain containing protein.;Transcript_evidence=AK122112 (DDBJ%2C Best hit);ORF_evidence=C0PG21 (UniProt);InterPro=Tesmin/TSO1-like%2C CXC (IPR005172);NIAS_FLcDNA=J033127O09;Expression=AK122112;TENOR=Os01t0761100-01;KEGG=Os01t0761100-01
Chr01	irgsp1_rep	five_prime_UTR	32022065	32022401	.	-	.	Parent=Os01t0761100-01
Chr01	irgsp1_rep	CDS	32021658	32022064	.	-	0	Parent=Os01t0761100-01
Chr01	irgsp1_rep	CDS	32021183	32021290	.	-	1	Parent=Os01t0761100-01
Chr01	irgsp1_rep	CDS	32020357	32020534	.	-	1	Parent=Os01t0761100-01
Chr01	irgsp1_rep	CDS	32019328	32019684	.	-	0	Parent=Os01t0761100-01
Chr01	irgsp1_rep	CDS	32018578	32018663	.	-	0	Parent=Os01t0761100-01
Chr01	irgsp1_rep	CDS	32018400	32018494	.	-	1	Parent=Os01t0761100-01
Chr01	irgsp1_rep	CDS	32017180	32017608	.	-	2	Parent=Os01t0761100-01
Chr01	irgsp1_rep	CDS	32016873	32017072	.	-	2	Parent=Os01t0761100-01
Chr01	irgsp1_rep	three_prime_UTR	32016706	32016872	.	-	.	Parent=Os01t0761100-01
Chr01	irgsp1_rep	mRNA	32028817	32032624	.	+	.	ID=Os01t0761300-01;Name=Os01t0761300-01;Locus_id=Os01g0761300;Note=Similar to Long-chain-fatty-acid-CoA ligase-like protein.;Transcript_evidence=AK071943 (DDBJ%2C Best hit);ORF_evidence=B6T7E3 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873);NIAS_FLcDNA=J013087E02;Expression=AK071943;TENOR=Os01t0761300-01;KEGG=Os01t0761300-01
Chr01	irgsp1_rep	CDS	32028817	32028864	.	+	0	Parent=Os01t0761300-01
Chr01	irgsp1_rep	CDS	32029016	32029069	.	+	0	Parent=Os01t0761300-01
Chr01	irgsp1_rep	CDS	32029309	32029416	.	+	0	Parent=Os01t0761300-01
Chr01	irgsp1_rep	CDS	32029525	32029623	.	+	0	Parent=Os01t0761300-01
Chr01	irgsp1_rep	CDS	32030258	32030350	.	+	0	Parent=Os01t0761300-01
Chr01	irgsp1_rep	CDS	32030442	32030519	.	+	0	Parent=Os01t0761300-01
Chr01	irgsp1_rep	CDS	32030611	32030712	.	+	0	Parent=Os01t0761300-01
Chr01	irgsp1_rep	CDS	32031230	32031320	.	+	0	Parent=Os01t0761300-01
Chr01	irgsp1_rep	CDS	32031435	32031508	.	+	2	Parent=Os01t0761300-01
Chr01	irgsp1_rep	CDS	32031750	32031929	.	+	0	Parent=Os01t0761300-01
Chr01	irgsp1_rep	CDS	32032262	32032315	.	+	0	Parent=Os01t0761300-01
Chr01	irgsp1_rep	CDS	32032385	32032423	.	+	0	Parent=Os01t0761300-01
Chr01	irgsp1_rep	three_prime_UTR	32032424	32032624	.	+	.	Parent=Os01t0761300-01
Chr01	irgsp1_rep	mRNA	32032173	32035337	.	+	.	ID=Os01t0761300-02;Name=Os01t0761300-02;Locus_id=Os01g0761300;Note=Hypothetical gene.;Transcript_evidence=AK109619 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-138-A03;Expression=AK109619;TENOR=Os01t0761300-02;KEGG=Os01t0761300-02
Chr01	irgsp1_rep	five_prime_UTR	32032173	32032315	.	+	.	Parent=Os01t0761300-02
Chr01	irgsp1_rep	five_prime_UTR	32032385	32033401	.	+	.	Parent=Os01t0761300-02
Chr01	irgsp1_rep	CDS	32033402	32033734	.	+	0	Parent=Os01t0761300-02
Chr01	irgsp1_rep	three_prime_UTR	32033735	32034586	.	+	.	Parent=Os01t0761300-02
Chr01	irgsp1_rep	three_prime_UTR	32034915	32035337	.	+	.	Parent=Os01t0761300-02
Chr01	irgsp1_rep	mRNA	32032727	32035011	.	-	.	ID=Os01t0761400-01;Name=Os01t0761400-01;Locus_id=Os01g0761400;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=TGF-beta receptor%2C type I/II extracellular region family protein.;Transcript_evidence=AK105550 (DDBJ%2C Best hit);ORF_evidence=A2WVB1 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=001-128-A10;Oryzabase=23631;Expression=AK105550;TENOR=Os01t0761400-01;KEGG=Os01t0761400-01
Chr01	irgsp1_rep	five_prime_UTR	32035004	32035011	.	-	.	Parent=Os01t0761400-01
Chr01	irgsp1_rep	CDS	32034913	32035003	.	-	0	Parent=Os01t0761400-01
Chr01	irgsp1_rep	CDS	32034428	32034645	.	-	2	Parent=Os01t0761400-01
Chr01	irgsp1_rep	CDS	32033786	32034342	.	-	0	Parent=Os01t0761400-01
Chr01	irgsp1_rep	CDS	32032828	32033686	.	-	1	Parent=Os01t0761400-01
Chr01	irgsp1_rep	three_prime_UTR	32032727	32032827	.	-	.	Parent=Os01t0761400-01
Chr01	irgsp1_rep	mRNA	32038024	32040378	.	-	.	ID=Os01t0761500-01;Name=Os01t0761500-01;Locus_id=Os01g0761500;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=TGF-beta receptor%2C type I/II extracellular region family protein.;Transcript_evidence=AK069522 (DDBJ%2C Best hit);ORF_evidence=NP_001152466.1 (RefSeq);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J023025M02;Oryzabase=23632;Expression=AK069522;TENOR=Os01t0761500-01;KEGG=Os01t0761500-01
Chr01	irgsp1_rep	five_prime_UTR	32040326	32040378	.	-	.	Parent=Os01t0761500-01
Chr01	irgsp1_rep	CDS	32040244	32040325	.	-	0	Parent=Os01t0761500-01
Chr01	irgsp1_rep	CDS	32039866	32040083	.	-	2	Parent=Os01t0761500-01
Chr01	irgsp1_rep	CDS	32038311	32039783	.	-	0	Parent=Os01t0761500-01
Chr01	irgsp1_rep	three_prime_UTR	32038024	32038310	.	-	.	Parent=Os01t0761500-01
Chr01	irgsp1_rep	mRNA	32038410	32040078	.	+	.	ID=Os01t0761600-00;Name=Os01t0761600-00;Locus_id=Os01g0761600;Note=Hypothetical protein.;Transcript_evidence=tplb0061c10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0761600-00
Chr01	irgsp1_rep	CDS	32038410	32039797	.	+	0	Parent=Os01t0761600-00
Chr01	irgsp1_rep	CDS	32039885	32039897	.	+	1	Parent=Os01t0761600-00
Chr01	irgsp1_rep	three_prime_UTR	32039898	32040078	.	+	.	Parent=Os01t0761600-00
Chr01	irgsp1_rep	mRNA	32048454	32048798	.	-	.	ID=Os01t0761701-01;Name=Os01t0761701-01;Locus_id=Os01g0761701;Note=Hypothetical conserved gene.;Transcript_evidence=AK242002 (DDBJ%2C Best hit);ORF_evidence=A2WVB3 (UniProt);NIAS_FLcDNA=J075102H10;TENOR=Os01t0761701-01;KEGG=Os01t0761701-01
Chr01	irgsp1_rep	CDS	32048709	32048798	.	-	0	Parent=Os01t0761701-01
Chr01	irgsp1_rep	three_prime_UTR	32048454	32048708	.	-	.	Parent=Os01t0761701-01
Chr01	irgsp1_rep	mRNA	32052568	32054302	.	+	.	ID=Os01t0761800-00;Name=Os01t0761800-00;Locus_id=Os01g0761800;Oryzabase Gene Symbol Synonym(s)=OsEnS-15%2C EnS-15;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 15;Note=Similar to Glutelin type-A 3.;Transcript_evidence=AF193433 (DDBJ);ORF_evidence=Q09151 (UniProt);GO=Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710);Oryzabase=18356;TENOR=Os01t0761800-00
Chr01	irgsp1_rep	CDS	32052568	32052907	.	+	0	Parent=Os01t0761800-00
Chr01	irgsp1_rep	CDS	32052988	32053043	.	+	2	Parent=Os01t0761800-00
Chr01	irgsp1_rep	three_prime_UTR	32053044	32053264	.	+	.	Parent=Os01t0761800-00
Chr01	irgsp1_rep	three_prime_UTR	32053377	32053622	.	+	.	Parent=Os01t0761800-00
Chr01	irgsp1_rep	three_prime_UTR	32053675	32053856	.	+	.	Parent=Os01t0761800-00
Chr01	irgsp1_rep	three_prime_UTR	32053939	32054302	.	+	.	Parent=Os01t0761800-00
Chr01	irgsp1_rep	mRNA	32057155	32058133	.	+	.	ID=Os01t0761900-00;Name=Os01t0761900-00;Locus_id=Os01g0761900;Note=TRAF-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001172575.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=TRAF-like (IPR008974);TENOR=Os01t0761900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	32057155	32057265	.	+	0	Parent=Os01t0761900-00
Chr01	irgsp1_rep	CDS	32057753	32058133	.	+	0	Parent=Os01t0761900-00
Chr01	irgsp1_rep	mRNA	32058676	32062829	.	-	.	ID=Os01t0762000-01;Name=Os01t0762000-01;Locus_id=Os01g0762000;Oryzabase Gene Symbol Synonym(s)=OspPLAIValpha%2C pPLAIValpha;Oryzabase Gene Name Synonym(s)=Patatin-related phospholipase A IV alpha;Note=ARF/SAR superfamily domain containing protein.;Transcript_evidence=AK120818 (DDBJ%2C Best hit);ORF_evidence=XP_002871068.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: metabolic process (GO:0008152),Molecular Function: GTP binding (GO:0005525);InterPro=Patatin/Phospholipase A2-related (IPR002641),Small GTPase superfamily%2C ARF/SAR type (IPR006689),Acyl transferase/acyl hydrolase/lysophospholipase (IPR016035),Triacylglycerol lipase (IPR021771);NIAS_FLcDNA=J023015D20;Oryzabase=19877;TENOR=Os01t0762000-01
Chr01	irgsp1_rep	five_prime_UTR	32062635	32062829	.	-	.	Parent=Os01t0762000-01
Chr01	irgsp1_rep	CDS	32062077	32062634	.	-	0	Parent=Os01t0762000-01
Chr01	irgsp1_rep	CDS	32060844	32061707	.	-	0	Parent=Os01t0762000-01
Chr01	irgsp1_rep	CDS	32060194	32060337	.	-	0	Parent=Os01t0762000-01
Chr01	irgsp1_rep	CDS	32058676	32060104	.	-	0	Parent=Os01t0762000-01
Chr01	irgsp1_rep	mRNA	32057400	32059356	.	-	.	ID=Os01t0762000-02;Name=Os01t0762000-02;Locus_id=Os01g0762000;Oryzabase Gene Symbol Synonym(s)=OspPLAIValpha%2C pPLAIValpha;Oryzabase Gene Name Synonym(s)=Patatin-related phospholipase A IV alpha;Note=Hypothetical conserved gene.;Transcript_evidence=AK120009 (DDBJ%2C Best hit);ORF_evidence=Q94DR5 (UniProt);NIAS_FLcDNA=002-186-A09;Oryzabase=19877;Expression=AK120009;TENOR=Os01t0762000-02;KEGG=Os01t0762000-02
Chr01	irgsp1_rep	five_prime_UTR	32059355	32059356	.	-	.	Parent=Os01t0762000-02
Chr01	irgsp1_rep	CDS	32058536	32059354	.	-	0	Parent=Os01t0762000-02
Chr01	irgsp1_rep	three_prime_UTR	32057400	32058535	.	-	.	Parent=Os01t0762000-02
Chr01	irgsp1_rep	mRNA	32070785	32072008	.	-	.	ID=Os01t0762300-01;Name=Os01t0762300-01;Locus_id=Os01g0762300;Note=Similar to predicted protein.;Transcript_evidence=AK287847 (DDBJ%2C Best hit);ORF_evidence=NP_001044326.1 (RefSeq);NIAS_FLcDNA=J065195G14;TENOR=Os01t0762300-01;KEGG=Os01t0762300-01
Chr01	irgsp1_rep	five_prime_UTR	32072008	32072008	.	-	.	Parent=Os01t0762300-01
Chr01	irgsp1_rep	CDS	32071797	32072007	.	-	0	Parent=Os01t0762300-01
Chr01	irgsp1_rep	CDS	32071641	32071690	.	-	2	Parent=Os01t0762300-01
Chr01	irgsp1_rep	CDS	32071084	32071165	.	-	0	Parent=Os01t0762300-01
Chr01	irgsp1_rep	CDS	32070919	32070965	.	-	2	Parent=Os01t0762300-01
Chr01	irgsp1_rep	three_prime_UTR	32070785	32070918	.	-	.	Parent=Os01t0762300-01
Chr01	irgsp1_rep	mRNA	32072708	32082549	.	-	.	ID=Os01t0762400-00;Name=Os01t0762400-00;Locus_id=Os01g0762400;Note=Similar to Import inner membrane translocase subunit TIM50.;Transcript_evidence=EU967553 (DDBJ);ORF_evidence=B6TRD8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=NLI interacting factor (IPR004274),HAD-like domain (IPR023214);TENOR=Os01t0762400-00;KEGG=Os01t0762400-00
Chr01	irgsp1_rep	five_prime_UTR	32082347	32082549	.	-	.	Parent=Os01t0762400-00
Chr01	irgsp1_rep	CDS	32082073	32082346	.	-	0	Parent=Os01t0762400-00
Chr01	irgsp1_rep	CDS	32081833	32081921	.	-	2	Parent=Os01t0762400-00
Chr01	irgsp1_rep	CDS	32081451	32081487	.	-	0	Parent=Os01t0762400-00
Chr01	irgsp1_rep	CDS	32080677	32080738	.	-	2	Parent=Os01t0762400-00
Chr01	irgsp1_rep	CDS	32080468	32080581	.	-	0	Parent=Os01t0762400-00
Chr01	irgsp1_rep	CDS	32079588	32079692	.	-	0	Parent=Os01t0762400-00
Chr01	irgsp1_rep	CDS	32079407	32079505	.	-	0	Parent=Os01t0762400-00
Chr01	irgsp1_rep	CDS	32074663	32074819	.	-	0	Parent=Os01t0762400-00
Chr01	irgsp1_rep	CDS	32074359	32074461	.	-	2	Parent=Os01t0762400-00
Chr01	irgsp1_rep	CDS	32072730	32072775	.	-	1	Parent=Os01t0762400-00
Chr01	irgsp1_rep	three_prime_UTR	32072708	32072729	.	-	.	Parent=Os01t0762400-00
Chr01	irgsp1_rep	mRNA	32076744	32078652	.	+	.	ID=Os01t0762500-00;Name=Os01t0762500-00;Locus_id=Os01g0762500;CGSNL Gene Symbol=GLUA1;CGSNL Gene Name=GLUTELIN SUBFAMILY A1 FROM WILD RICE SPECIES;Oryzabase Gene Symbol Synonym(s)=Glua1*%2C Glua1%2C GLUA-1%2C GluA-1%2C GluA1%2C Glu19%2C OsEnS-16;Oryzabase Gene Name Synonym(s)=Glutelin subfamily A1 from wild rice species%2C Glutelin subfamily A-1 from wild rice species%2C Glutelin type-A 1 precursor%2C Glutelin type-A 1%2C Glutelin type I%2C Glutelin type-A 1 acidic chain%2C Glutelin type-A 1 basic chain%2C Rice glutelin-19%2C glutelin-19%2C endosperm-specific gene 16;Note=Glutelin subunit mRNA.;Transcript_evidence=X05662 (DDBJ%2C Best hit);ORF_evidence=P07728 (UniProt);GO=Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=11-S seed storage protein%2C plant (IPR006044),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),11-S seed storage protein%2C conserved site (IPR022379);Oryzabase=137;Expression=X05662;TENOR=Os01t0762500-00;KEGG=Os01t0762500-00
Chr01	irgsp1_rep	five_prime_UTR	32076744	32076767	.	+	.	Parent=Os01t0762500-00
Chr01	irgsp1_rep	CDS	32076768	32077098	.	+	0	Parent=Os01t0762500-00
Chr01	irgsp1_rep	CDS	32077188	32077462	.	+	2	Parent=Os01t0762500-00
Chr01	irgsp1_rep	CDS	32077567	32078046	.	+	0	Parent=Os01t0762500-00
Chr01	irgsp1_rep	CDS	32078129	32078542	.	+	0	Parent=Os01t0762500-00
Chr01	irgsp1_rep	three_prime_UTR	32078543	32078652	.	+	.	Parent=Os01t0762500-00
Chr01	irgsp1_rep	mRNA	32081996	32082337	.	+	.	ID=Os01t0762601-00;Name=Os01t0762601-00;Locus_id=Os01g0762601;Note=Hypothetical protein.;Transcript_evidence=EU948034 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0762601-00
Chr01	irgsp1_rep	five_prime_UTR	32081996	32082016	.	+	.	Parent=Os01t0762601-00
Chr01	irgsp1_rep	CDS	32082017	32082262	.	+	0	Parent=Os01t0762601-00
Chr01	irgsp1_rep	three_prime_UTR	32082263	32082337	.	+	.	Parent=Os01t0762601-00
Chr01	irgsp1_rep	mRNA	32088269	32089040	.	-	.	ID=Os01t0762900-01;Name=Os01t0762900-01;Locus_id=Os01g0762900;Note=Similar to UPA24.;Transcript_evidence=AK242065 (DDBJ%2C Best hit);ORF_evidence=C8YZB6 (UniProt);NIAS_FLcDNA=J075129E21;TENOR=Os01t0762900-01;KEGG=Os01t0762900-01
Chr01	irgsp1_rep	five_prime_UTR	32088838	32089040	.	-	.	Parent=Os01t0762900-01
Chr01	irgsp1_rep	CDS	32088502	32088837	.	-	0	Parent=Os01t0762900-01
Chr01	irgsp1_rep	three_prime_UTR	32088269	32088501	.	-	.	Parent=Os01t0762900-01
Chr01	irgsp1_rep	mRNA	32091719	32094141	.	-	.	ID=Os01t0763000-01;Name=Os01t0763000-01;Locus_id=Os01g0763000;Note=Protein of unknown function DUF2039 domain containing protein.;Transcript_evidence=AK099449 (DDBJ%2C Best hit);ORF_evidence=A2WVC3 (UniProt);InterPro=Protein of unknown function DUF2039 (IPR019351);NIAS_FLcDNA=J013022F08;Expression=AK099449;TENOR=Os01t0763000-01;KEGG=Os01t0763000-01
Chr01	irgsp1_rep	five_prime_UTR	32094023	32094141	.	-	.	Parent=Os01t0763000-01
Chr01	irgsp1_rep	CDS	32093942	32094022	.	-	0	Parent=Os01t0763000-01
Chr01	irgsp1_rep	CDS	32093773	32093855	.	-	0	Parent=Os01t0763000-01
Chr01	irgsp1_rep	CDS	32093641	32093679	.	-	1	Parent=Os01t0763000-01
Chr01	irgsp1_rep	CDS	32093482	32093534	.	-	1	Parent=Os01t0763000-01
Chr01	irgsp1_rep	CDS	32093330	32093393	.	-	2	Parent=Os01t0763000-01
Chr01	irgsp1_rep	CDS	32093183	32093225	.	-	1	Parent=Os01t0763000-01
Chr01	irgsp1_rep	CDS	32093060	32093107	.	-	0	Parent=Os01t0763000-01
Chr01	irgsp1_rep	CDS	32091852	32092016	.	-	0	Parent=Os01t0763000-01
Chr01	irgsp1_rep	three_prime_UTR	32091719	32091851	.	-	.	Parent=Os01t0763000-01
Chr01	irgsp1_rep	mRNA	32094307	32098510	.	+	.	ID=Os01t0763100-00;Name=Os01t0763100-00;Locus_id=Os01g0763100;Oryzabase Gene Symbol Synonym(s)=OsRhmbd4%2C RHMBD4;Oryzabase Gene Name Synonym(s)=Rhomboid 4%2C RHOMBOID 4;Note=Hypothetical conserved gene.;Transcript_evidence=tplb0015g15 (Wheat FLcDNA);ORF_evidence=NP_564058.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Cellular Component: integral to membrane (GO:0016021),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S54%2C rhomboid (IPR002610),Peptidase S54%2C rhomboid domain (IPR022764);Oryzabase=20060;TENOR=Os01t0763100-00;KEGG=Os01t0763100-00
Chr01	irgsp1_rep	five_prime_UTR	32094307	32094402	.	+	.	Parent=Os01t0763100-00
Chr01	irgsp1_rep	CDS	32094403	32094758	.	+	0	Parent=Os01t0763100-00
Chr01	irgsp1_rep	CDS	32094848	32094962	.	+	1	Parent=Os01t0763100-00
Chr01	irgsp1_rep	CDS	32095044	32095163	.	+	0	Parent=Os01t0763100-00
Chr01	irgsp1_rep	CDS	32096420	32096530	.	+	0	Parent=Os01t0763100-00
Chr01	irgsp1_rep	CDS	32096826	32096864	.	+	0	Parent=Os01t0763100-00
Chr01	irgsp1_rep	CDS	32097707	32097811	.	+	0	Parent=Os01t0763100-00
Chr01	irgsp1_rep	CDS	32097891	32097929	.	+	0	Parent=Os01t0763100-00
Chr01	irgsp1_rep	CDS	32098416	32098505	.	+	0	Parent=Os01t0763100-00
Chr01	irgsp1_rep	three_prime_UTR	32098506	32098510	.	+	.	Parent=Os01t0763100-00
Chr01	irgsp1_rep	mRNA	32106876	32109742	.	-	.	ID=Os01t0763200-01;Name=Os01t0763200-01;Locus_id=Os01g0763200;RAP-DB Gene Symbol Synonym(s)=OsTCP5%2C TCP5;RAP-DB Gene Name Synonym(s)=TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 5%2C TEOSINTE BRANCHED1/CYCLOIDEA/PCFs 5;Oryzabase Gene Symbol Synonym(s)=OsTCP5%2C TCP5;Oryzabase Gene Name Synonym(s)=TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 5%2C TEOSINTE BRANCHED1/CYCLOIDEA/PCFs 5%2C TEOSINTE BRANCHED1/ CYCLOIDEA/PCF transcription factor 5%2C TCP transcription factor 5;Note=TCP family transcription factor%2C Strigolactone and cytokinin controlled mesocotyl elongation in darkness;Transcript_evidence=AK071964;ORF_evidence=Q8LR43;InterPro=Transcription factor%2C TCP (IPR005333),Transcription factor TCP subgroup (IPR017887);NIAS_FLcDNA=J013079O19;Manual Curation=November 21%2C 2014;Literature_PMID=24151204;Oryzabase=12392;TENOR=Os01t0763200-01;KEGG=Os01t0763200-01
Chr01	irgsp1_rep	five_prime_UTR	32109489	32109742	.	-	.	Parent=Os01t0763200-01
Chr01	irgsp1_rep	five_prime_UTR	32108168	32108231	.	-	.	Parent=Os01t0763200-01
Chr01	irgsp1_rep	CDS	32107244	32108167	.	-	0	Parent=Os01t0763200-01
Chr01	irgsp1_rep	three_prime_UTR	32106876	32107243	.	-	.	Parent=Os01t0763200-01
Chr01	irgsp1_rep	mRNA	32123296	32127983	.	-	.	ID=Os01t0763300-01;Name=Os01t0763300-01;Locus_id=Os01g0763300;Note=Conserved hypothetical protein.;Transcript_evidence=AK063778 (DDBJ%2C Best hit),AK122186 (DDBJ%2C Best hit);ORF_evidence=B6TU01 (UniProt);NIAS_FLcDNA=001-121-D04,J033150K13;TENOR=Os01t0763300-01
Chr01	irgsp1_rep	five_prime_UTR	32127919	32127983	.	-	.	Parent=Os01t0763300-01
Chr01	irgsp1_rep	CDS	32127505	32127918	.	-	0	Parent=Os01t0763300-01
Chr01	irgsp1_rep	three_prime_UTR	32127497	32127504	.	-	.	Parent=Os01t0763300-01
Chr01	irgsp1_rep	three_prime_UTR	32123296	32123540	.	-	.	Parent=Os01t0763300-01
Chr01	irgsp1_rep	mRNA	32130603	32136991	.	+	.	ID=Os01t0763600-01;Name=Os01t0763600-01;Locus_id=Os01g0763600;Note=PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain domain containing protein.;Transcript_evidence=AK066596 (DDBJ%2C Best hit);ORF_evidence=NP_196420.1 (RefSeq);GO=Biological Process: glycerol metabolic process (GO:0006071),Biological Process: lipid metabolic process (GO:0006629),Molecular Function: phosphoric diester hydrolase activity (GO:0008081),Molecular Function: glycerophosphodiester phosphodiesterase activity (GO:0008889);InterPro=Glycerophosphoryl diester phosphodiesterase (IPR004129),PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain (IPR017946);NIAS_FLcDNA=J013070K24;Expression=AK066596;TENOR=Os01t0763600-01;KEGG=Os01t0763600-01 (EC:3.1.4.46)
Chr01	irgsp1_rep	five_prime_UTR	32130603	32130788	.	+	.	Parent=Os01t0763600-01
Chr01	irgsp1_rep	CDS	32130789	32130804	.	+	0	Parent=Os01t0763600-01
Chr01	irgsp1_rep	CDS	32132772	32132950	.	+	2	Parent=Os01t0763600-01
Chr01	irgsp1_rep	CDS	32133502	32133685	.	+	0	Parent=Os01t0763600-01
Chr01	irgsp1_rep	CDS	32134456	32134530	.	+	2	Parent=Os01t0763600-01
Chr01	irgsp1_rep	CDS	32134821	32134930	.	+	2	Parent=Os01t0763600-01
Chr01	irgsp1_rep	CDS	32135489	32135707	.	+	0	Parent=Os01t0763600-01
Chr01	irgsp1_rep	CDS	32135866	32136021	.	+	0	Parent=Os01t0763600-01
Chr01	irgsp1_rep	CDS	32136501	32136737	.	+	0	Parent=Os01t0763600-01
Chr01	irgsp1_rep	three_prime_UTR	32136738	32136991	.	+	.	Parent=Os01t0763600-01
Chr01	irgsp1_rep	mRNA	32130646	32136818	.	+	.	ID=Os01t0763600-02;Name=Os01t0763600-02;Locus_id=Os01g0763600;Note=PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain domain containing protein.;Transcript_evidence=AK061563 (DDBJ%2C Best hit);ORF_evidence=NP_196420.1 (RefSeq);GO=Biological Process: glycerol metabolic process (GO:0006071),Biological Process: lipid metabolic process (GO:0006629),Molecular Function: phosphoric diester hydrolase activity (GO:0008081),Molecular Function: glycerophosphodiester phosphodiesterase activity (GO:0008889);InterPro=Glycerophosphoryl diester phosphodiesterase (IPR004129),PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain (IPR017946);NIAS_FLcDNA=006-311-E04;Expression=AK061563;TENOR=Os01t0763600-02;KEGG=Os01t0763600-02 (EC:3.1.4.46)
Chr01	irgsp1_rep	five_prime_UTR	32130646	32130788	.	+	.	Parent=Os01t0763600-02
Chr01	irgsp1_rep	CDS	32130789	32130804	.	+	0	Parent=Os01t0763600-02
Chr01	irgsp1_rep	CDS	32132772	32132950	.	+	2	Parent=Os01t0763600-02
Chr01	irgsp1_rep	CDS	32133502	32133685	.	+	0	Parent=Os01t0763600-02
Chr01	irgsp1_rep	CDS	32134456	32134530	.	+	2	Parent=Os01t0763600-02
Chr01	irgsp1_rep	CDS	32134821	32134930	.	+	2	Parent=Os01t0763600-02
Chr01	irgsp1_rep	CDS	32135489	32135707	.	+	0	Parent=Os01t0763600-02
Chr01	irgsp1_rep	CDS	32135866	32136021	.	+	0	Parent=Os01t0763600-02
Chr01	irgsp1_rep	CDS	32136501	32136737	.	+	0	Parent=Os01t0763600-02
Chr01	irgsp1_rep	three_prime_UTR	32136738	32136818	.	+	.	Parent=Os01t0763600-02
Chr01	irgsp1_rep	mRNA	32137366	32139052	.	+	.	ID=Os01t0763700-01;Name=Os01t0763700-01;Locus_id=Os01g0763700;Note=Similar to CRR7 (CHLORORESPIRATORY REDUCTION 7).;Transcript_evidence=AK063070 (DDBJ%2C Best hit);ORF_evidence=NP_568563.1 (RefSeq);InterPro=Protein of unknown function DUF3571 (IPR021954);NIAS_FLcDNA=001-110-H01;Expression=AK063070;TENOR=Os01t0763700-01;KEGG=Os01t0763700-01
Chr01	irgsp1_rep	five_prime_UTR	32137366	32137419	.	+	.	Parent=Os01t0763700-01
Chr01	irgsp1_rep	CDS	32137420	32137462	.	+	0	Parent=Os01t0763700-01
Chr01	irgsp1_rep	CDS	32138340	32138470	.	+	2	Parent=Os01t0763700-01
Chr01	irgsp1_rep	CDS	32138600	32138881	.	+	0	Parent=Os01t0763700-01
Chr01	irgsp1_rep	three_prime_UTR	32138882	32139052	.	+	.	Parent=Os01t0763700-01
Chr01	irgsp1_rep	mRNA	32140069	32143430	.	+	.	ID=Os01t0763750-01;Name=Os01t0763750-01;Locus_id=Os01g0763750;CGSNL Gene Symbol=EXO70X1;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN X1;Oryzabase Gene Symbol Synonym(s)=OsEXO70X1%2C OsExo70X1%2C OrysaX1_Exo70%2C OsEXO70E1%2C OsExo70E1%2C EXO70E1;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein X1%2C exocyst subunit EXO70 family protein E1;Note=Exo70 exocyst complex subunit family protein.;Transcript_evidence=AK102787 (DDBJ%2C Best hit);ORF_evidence=NP_001148051.1 (RefSeq);GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exo70 exocyst complex subunit (IPR004140),Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=J033107M19;Oryzabase=20367;Expression=AK102787;TENOR=Os01t0763750-01;KEGG=Os01t0763750-01
Chr01	irgsp1_rep	five_prime_UTR	32140069	32140378	.	+	.	Parent=Os01t0763750-01
Chr01	irgsp1_rep	five_prime_UTR	32141445	32141503	.	+	.	Parent=Os01t0763750-01
Chr01	irgsp1_rep	CDS	32141504	32143312	.	+	0	Parent=Os01t0763750-01
Chr01	irgsp1_rep	three_prime_UTR	32143313	32143430	.	+	.	Parent=Os01t0763750-01
Chr01	irgsp1_rep	mRNA	32140218	32143430	.	+	.	ID=Os01t0763750-02;Name=Os01t0763750-02;Locus_id=Os01g0763750;CGSNL Gene Symbol=EXO70X1;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN X1;Oryzabase Gene Symbol Synonym(s)=OsEXO70X1%2C OsExo70X1%2C OrysaX1_Exo70%2C OsEXO70E1%2C OsExo70E1%2C EXO70E1;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein X1%2C exocyst subunit EXO70 family protein E1;Note=Exo70 exocyst complex subunit family protein.;Transcript_evidence=AK105652 (DDBJ%2C Best hit);ORF_evidence=NP_001148051.1 (RefSeq);GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exo70 exocyst complex subunit (IPR004140),Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=001-200-G03;Oryzabase=20367;Expression=AK105652;TENOR=Os01t0763750-02;KEGG=Os01t0763750-02
Chr01	irgsp1_rep	five_prime_UTR	32140218	32140378	.	+	.	Parent=Os01t0763750-02
Chr01	irgsp1_rep	five_prime_UTR	32141445	32141503	.	+	.	Parent=Os01t0763750-02
Chr01	irgsp1_rep	CDS	32141504	32143312	.	+	0	Parent=Os01t0763750-02
Chr01	irgsp1_rep	three_prime_UTR	32143313	32143430	.	+	.	Parent=Os01t0763750-02
Chr01	irgsp1_rep	mRNA	32143765	32145444	.	-	.	ID=Os01t0763800-01;Name=Os01t0763800-01;Locus_id=Os01g0763800;Note=CytoChrome P450%2C conserved site domain containing protein.;Transcript_evidence=AK069980 (DDBJ%2C Best hit);ORF_evidence=B8AA38 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705);InterPro=CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J023038A09;Expression=AK069980;TENOR=Os01t0763800-01;KEGG=Os01t0763800-01
Chr01	irgsp1_rep	five_prime_UTR	32145286	32145444	.	-	.	Parent=Os01t0763800-01
Chr01	irgsp1_rep	CDS	32145256	32145285	.	-	0	Parent=Os01t0763800-01
Chr01	irgsp1_rep	CDS	32144529	32145069	.	-	0	Parent=Os01t0763800-01
Chr01	irgsp1_rep	CDS	32143816	32144456	.	-	2	Parent=Os01t0763800-01
Chr01	irgsp1_rep	three_prime_UTR	32143765	32143815	.	-	.	Parent=Os01t0763800-01
Chr01	irgsp1_rep	mRNA	32144164	32144895	.	+	.	ID=Os01t0763850-00;Name=Os01t0763850-00;Locus_id=Os01g0763850;Note=Hypothetical protein.;Transcript_evidence=BT085554 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0763850-00
Chr01	irgsp1_rep	five_prime_UTR	32144164	32144307	.	+	.	Parent=Os01t0763850-00
Chr01	irgsp1_rep	CDS	32144308	32144463	.	+	0	Parent=Os01t0763850-00
Chr01	irgsp1_rep	CDS	32144535	32144895	.	+	0	Parent=Os01t0763850-00
Chr01	irgsp1_rep	mRNA	32145847	32147094	.	-	.	ID=Os01t0763900-01;Name=Os01t0763900-01;Locus_id=Os01g0763900;Note=X8 domain containing protein.;Transcript_evidence=AK108127 (DDBJ%2C Best hit);ORF_evidence=NP_001151015.1 (RefSeq);InterPro=X8 (IPR012946);NIAS_FLcDNA=002-139-D06;Expression=AK108127;TENOR=Os01t0763900-01;KEGG=Os01t0763900-01
Chr01	irgsp1_rep	five_prime_UTR	32146990	32147094	.	-	.	Parent=Os01t0763900-01
Chr01	irgsp1_rep	CDS	32146929	32146989	.	-	0	Parent=Os01t0763900-01
Chr01	irgsp1_rep	CDS	32146598	32146840	.	-	2	Parent=Os01t0763900-01
Chr01	irgsp1_rep	CDS	32146479	32146512	.	-	2	Parent=Os01t0763900-01
Chr01	irgsp1_rep	CDS	32146072	32146357	.	-	1	Parent=Os01t0763900-01
Chr01	irgsp1_rep	three_prime_UTR	32145847	32146071	.	-	.	Parent=Os01t0763900-01
Chr01	irgsp1_rep	mRNA	32148159	32152034	.	-	.	ID=Os01t0764000-01;Name=Os01t0764000-01;Locus_id=Os01g0764000;CGSNL Gene Symbol=GSTF2;CGSNL Gene Name=PHI GLUTATHIONE S-TRANSFERASE 2;Oryzabase Gene Symbol Synonym(s)=OsGSTF2%2C RGSTII;Oryzabase Gene Name Synonym(s)=glutathione S-transferase II;Note=Similar to Glutathione S-transferase I (EC 2.5.1.18) (GST-I) (GST-29) (GST class- phi).;Transcript_evidence=AK059818 (DDBJ%2C Best hit),AK099142 (DDBJ%2C Best hit);ORF_evidence=A6N115 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=006-205-C06,J023055F24;Oryzabase=9504;TENOR=Os01t0764000-01
Chr01	irgsp1_rep	five_prime_UTR	32151853	32152034	.	-	.	Parent=Os01t0764000-01
Chr01	irgsp1_rep	CDS	32151703	32151852	.	-	0	Parent=Os01t0764000-01
Chr01	irgsp1_rep	CDS	32149728	32149776	.	-	0	Parent=Os01t0764000-01
Chr01	irgsp1_rep	CDS	32148399	32148847	.	-	2	Parent=Os01t0764000-01
Chr01	irgsp1_rep	three_prime_UTR	32148159	32148398	.	-	.	Parent=Os01t0764000-01
Chr01	irgsp1_rep	mRNA	32148159	32148833	.	-	.	ID=Os01t0764000-02;Name=Os01t0764000-02;Locus_id=Os01g0764000;CGSNL Gene Symbol=GSTF2;CGSNL Gene Name=PHI GLUTATHIONE S-TRANSFERASE 2;Oryzabase Gene Symbol Synonym(s)=OsGSTF2%2C RGSTII;Oryzabase Gene Name Synonym(s)=glutathione S-transferase II;Note=Similar to Glutathione s-transferase ii (Fragment).;Transcript_evidence=AK060216 (DDBJ%2C Best hit);ORF_evidence=A6N115 (UniProt);InterPro=Glutathione S-transferase%2C C-terminal-like (IPR010987),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=001-002-C12;Oryzabase=9504;Expression=AK060216;TENOR=Os01t0764000-02;KEGG=Os01t0764000-02
Chr01	irgsp1_rep	CDS	32148583	32148833	.	-	0	Parent=Os01t0764000-02
Chr01	irgsp1_rep	CDS	32148347	32148410	.	-	1	Parent=Os01t0764000-02
Chr01	irgsp1_rep	three_prime_UTR	32148159	32148346	.	-	.	Parent=Os01t0764000-02
Chr01	irgsp1_rep	mRNA	32148159	32151927	.	-	.	ID=Os01t0764000-03;Name=Os01t0764000-03;Locus_id=Os01g0764000;CGSNL Gene Symbol=GSTF2;CGSNL Gene Name=PHI GLUTATHIONE S-TRANSFERASE 2;Oryzabase Gene Symbol Synonym(s)=OsGSTF2%2C RGSTII;Oryzabase Gene Name Synonym(s)=glutathione S-transferase II;Note=Similar to Glutathione S-transferase I (EC 2.5.1.18) (GST-I) (GST-29) (GST class- phi).;Transcript_evidence=AK058894 (DDBJ%2C Best hit);ORF_evidence=A6N115 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=001-007-E12;Oryzabase=9504;TENOR=Os01t0764000-03
Chr01	irgsp1_rep	five_prime_UTR	32151853	32151927	.	-	.	Parent=Os01t0764000-03
Chr01	irgsp1_rep	CDS	32151703	32151852	.	-	0	Parent=Os01t0764000-03
Chr01	irgsp1_rep	CDS	32149728	32149776	.	-	0	Parent=Os01t0764000-03
Chr01	irgsp1_rep	CDS	32148399	32148847	.	-	2	Parent=Os01t0764000-03
Chr01	irgsp1_rep	three_prime_UTR	32148159	32148398	.	-	.	Parent=Os01t0764000-03
Chr01	irgsp1_rep	mRNA	32148201	32151864	.	+	.	ID=Os01t0764050-00;Name=Os01t0764050-00;Locus_id=Os01g0764050;Note=Hypothetical gene.;Transcript_evidence=BT009482 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0764050-00
Chr01	irgsp1_rep	five_prime_UTR	32148201	32148708	.	+	.	Parent=Os01t0764050-00
Chr01	irgsp1_rep	CDS	32148709	32148877	.	+	0	Parent=Os01t0764050-00
Chr01	irgsp1_rep	CDS	32151681	32151864	.	+	2	Parent=Os01t0764050-00
Chr01	irgsp1_rep	mRNA	32162466	32165129	.	-	.	ID=Os01t0764150-01;Name=Os01t0764150-01;Locus_id=Os01g0764150;Note=Non-protein coding transcript.;Transcript_evidence=AK242762 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090052I17;TENOR=Os01t0764150-01
Chr01	irgsp1_rep	exon	32162466	32165129	.	-	.	Parent=Os01t0764150-01
Chr01	irgsp1_rep	mRNA	32165440	32165796	.	+	.	ID=Os01t0764200-00;Name=Os01t0764200-00;Locus_id=Os01g0764200;Oryzabase Gene Symbol Synonym(s)=OsSTA33;Note=Hypothetical conserved gene.;Transcript_evidence=AB332051 (DDBJ%2C Best hit);ORF_evidence=A2WVD4 (UniProt);Oryzabase=19340;TENOR=Os01t0764200-00;KEGG=Os01t0764200-00
Chr01	irgsp1_rep	CDS	32165440	32165796	.	+	0	Parent=Os01t0764200-00
Chr01	irgsp1_rep	mRNA	32167881	32171339	.	+	.	ID=Os01t0764300-01;Name=Os01t0764300-01;Locus_id=Os01g0764300;Note=Protein of unknown function DUF155 domain containing protein.;Transcript_evidence=AK242769 (DDBJ%2C Best hit);ORF_evidence=Q5JN20 (UniProt);InterPro=Protein of unknown function DUF155 (IPR003734);NIAS_FLcDNA=J090053G03;TENOR=Os01t0764300-01;KEGG=Os01t0764300-01
Chr01	irgsp1_rep	five_prime_UTR	32167881	32167959	.	+	.	Parent=Os01t0764300-01
Chr01	irgsp1_rep	CDS	32167960	32168282	.	+	0	Parent=Os01t0764300-01
Chr01	irgsp1_rep	CDS	32168474	32168585	.	+	1	Parent=Os01t0764300-01
Chr01	irgsp1_rep	CDS	32168759	32168918	.	+	0	Parent=Os01t0764300-01
Chr01	irgsp1_rep	CDS	32169331	32169479	.	+	2	Parent=Os01t0764300-01
Chr01	irgsp1_rep	CDS	32169574	32169725	.	+	0	Parent=Os01t0764300-01
Chr01	irgsp1_rep	CDS	32170486	32170600	.	+	1	Parent=Os01t0764300-01
Chr01	irgsp1_rep	CDS	32170698	32170835	.	+	0	Parent=Os01t0764300-01
Chr01	irgsp1_rep	three_prime_UTR	32170836	32171339	.	+	.	Parent=Os01t0764300-01
Chr01	irgsp1_rep	mRNA	32171834	32174870	.	-	.	ID=Os01t0764400-01;Name=Os01t0764400-01;Locus_id=Os01g0764400;Oryzabase Gene Symbol Synonym(s)=CM%2C OsCM;Oryzabase Gene Name Synonym(s)=chorismate mutase;Note=Similar to Chorismate mutase%2C chloroplast precursor (EC 5.4.99.5) (CM-1).;Transcript_evidence=AK068983 (DDBJ%2C Best hit);ORF_evidence=B6TU00 (UniProt);GO=Biological Process: aromatic amino acid family biosynthetic process (GO:0009073),Biological Process: chorismate metabolic process (GO:0046417),Molecular Function: chorismate mutase activity (GO:0004106);InterPro=Chorismate mutase%2C AroQ class%2C eukaryotic type (IPR008238),Chorismate mutase%2C type II (IPR020822);NIAS_FLcDNA=J023001N13;Oryzabase=16773;Expression=AK068983;TENOR=Os01t0764400-01;KEGG=Os01t0764400-01 (EC:5.4.99.5)
Chr01	irgsp1_rep	five_prime_UTR	32174782	32174870	.	-	.	Parent=Os01t0764400-01
Chr01	irgsp1_rep	CDS	32174621	32174781	.	-	0	Parent=Os01t0764400-01
Chr01	irgsp1_rep	CDS	32173600	32173819	.	-	1	Parent=Os01t0764400-01
Chr01	irgsp1_rep	CDS	32173427	32173513	.	-	0	Parent=Os01t0764400-01
Chr01	irgsp1_rep	CDS	32172817	32172960	.	-	0	Parent=Os01t0764400-01
Chr01	irgsp1_rep	CDS	32172433	32172525	.	-	0	Parent=Os01t0764400-01
Chr01	irgsp1_rep	CDS	32172052	32172288	.	-	0	Parent=Os01t0764400-01
Chr01	irgsp1_rep	three_prime_UTR	32171834	32172051	.	-	.	Parent=Os01t0764400-01
Chr01	irgsp1_rep	mRNA	32177351	32179312	.	-	.	ID=Os01t0764500-01;Name=Os01t0764500-01;Locus_id=Os01g0764500;Note=Similar to uvrB/uvrC motif-containing protein.;Transcript_evidence=AK120433 (DDBJ%2C Best hit);ORF_evidence=NP_178438.2 (RefSeq);NIAS_FLcDNA=J013097E20;Expression=AK120433;TENOR=Os01t0764500-01;KEGG=Os01t0764500-01
Chr01	irgsp1_rep	five_prime_UTR	32178215	32179312	.	-	.	Parent=Os01t0764500-01
Chr01	irgsp1_rep	CDS	32178125	32178214	.	-	0	Parent=Os01t0764500-01
Chr01	irgsp1_rep	CDS	32177890	32178045	.	-	0	Parent=Os01t0764500-01
Chr01	irgsp1_rep	three_prime_UTR	32177887	32177889	.	-	.	Parent=Os01t0764500-01
Chr01	irgsp1_rep	three_prime_UTR	32177351	32177798	.	-	.	Parent=Os01t0764500-01
Chr01	irgsp1_rep	mRNA	32185411	32189756	.	-	.	ID=Os01t0764600-01;Name=Os01t0764600-01;Locus_id=Os01g0764600;Note=Hypothetical conserved gene.;Transcript_evidence=AK068053 (DDBJ%2C Best hit);ORF_evidence=B8AA40 (UniProt);NIAS_FLcDNA=J013134N08;Expression=AK068053;TENOR=Os01t0764600-01;KEGG=Os01t0764600-01
Chr01	irgsp1_rep	five_prime_UTR	32189756	32189756	.	-	.	Parent=Os01t0764600-01
Chr01	irgsp1_rep	CDS	32189246	32189755	.	-	0	Parent=Os01t0764600-01
Chr01	irgsp1_rep	three_prime_UTR	32188351	32189245	.	-	.	Parent=Os01t0764600-01
Chr01	irgsp1_rep	three_prime_UTR	32188133	32188175	.	-	.	Parent=Os01t0764600-01
Chr01	irgsp1_rep	three_prime_UTR	32187501	32187759	.	-	.	Parent=Os01t0764600-01
Chr01	irgsp1_rep	three_prime_UTR	32187057	32187092	.	-	.	Parent=Os01t0764600-01
Chr01	irgsp1_rep	three_prime_UTR	32186861	32186938	.	-	.	Parent=Os01t0764600-01
Chr01	irgsp1_rep	three_prime_UTR	32186552	32186618	.	-	.	Parent=Os01t0764600-01
Chr01	irgsp1_rep	three_prime_UTR	32186348	32186410	.	-	.	Parent=Os01t0764600-01
Chr01	irgsp1_rep	three_prime_UTR	32185807	32185910	.	-	.	Parent=Os01t0764600-01
Chr01	irgsp1_rep	three_prime_UTR	32185411	32185714	.	-	.	Parent=Os01t0764600-01
Chr01	irgsp1_rep	mRNA	32185418	32189752	.	-	.	ID=Os01t0764600-02;Name=Os01t0764600-02;Locus_id=Os01g0764600;Note=Aspartate/glutamate/uridylate kinase domain containing protein.;Transcript_evidence=AK060621 (DDBJ%2C Best hit);ORF_evidence=XP_002890650.1 (RefSeq);GO=Biological Process: cellular amino acid biosynthetic process (GO:0008652);InterPro=Aspartate/glutamate/uridylate kinase (IPR001048);NIAS_FLcDNA=001-026-D03;Expression=AK060621;TENOR=Os01t0764600-02;KEGG=Os01t0764600-02
Chr01	irgsp1_rep	five_prime_UTR	32189698	32189752	.	-	.	Parent=Os01t0764600-02
Chr01	irgsp1_rep	CDS	32189622	32189697	.	-	0	Parent=Os01t0764600-02
Chr01	irgsp1_rep	CDS	32189317	32189553	.	-	2	Parent=Os01t0764600-02
Chr01	irgsp1_rep	CDS	32188351	32188448	.	-	2	Parent=Os01t0764600-02
Chr01	irgsp1_rep	CDS	32188133	32188175	.	-	0	Parent=Os01t0764600-02
Chr01	irgsp1_rep	CDS	32187698	32187759	.	-	2	Parent=Os01t0764600-02
Chr01	irgsp1_rep	CDS	32187501	32187557	.	-	0	Parent=Os01t0764600-02
Chr01	irgsp1_rep	CDS	32187057	32187092	.	-	0	Parent=Os01t0764600-02
Chr01	irgsp1_rep	CDS	32186861	32186938	.	-	0	Parent=Os01t0764600-02
Chr01	irgsp1_rep	CDS	32186552	32186618	.	-	0	Parent=Os01t0764600-02
Chr01	irgsp1_rep	CDS	32186348	32186410	.	-	2	Parent=Os01t0764600-02
Chr01	irgsp1_rep	CDS	32185807	32185910	.	-	2	Parent=Os01t0764600-02
Chr01	irgsp1_rep	CDS	32185628	32185714	.	-	0	Parent=Os01t0764600-02
Chr01	irgsp1_rep	three_prime_UTR	32185418	32185627	.	-	.	Parent=Os01t0764600-02
Chr01	irgsp1_rep	mRNA	32189932	32193266	.	+	.	ID=Os01t0764700-01;Name=Os01t0764700-01;Locus_id=Os01g0764700;Note=Resolvase%2C holliday junction-type%2C YqgF-like domain containing protein.;Transcript_evidence=AK071863 (DDBJ%2C Best hit);ORF_evidence=D9ZIZ7 (UniProt);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Biological Process: DNA repair (GO:0006281),Biological Process: DNA recombination (GO:0006310),Biological Process: response to DNA damage stimulus (GO:0006974),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Resolvase%2C holliday junction-type%2C YqgF-like (IPR005227),YqgF/RNase H-like domain (IPR006641),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J023122I17;Expression=AK071863;TENOR=Os01t0764700-01;KEGG=Os01t0764700-01 (EC:3.1.-.-)
Chr01	irgsp1_rep	five_prime_UTR	32189932	32190159	.	+	.	Parent=Os01t0764700-01
Chr01	irgsp1_rep	five_prime_UTR	32190478	32190499	.	+	.	Parent=Os01t0764700-01
Chr01	irgsp1_rep	CDS	32190500	32190648	.	+	0	Parent=Os01t0764700-01
Chr01	irgsp1_rep	CDS	32191562	32191619	.	+	1	Parent=Os01t0764700-01
Chr01	irgsp1_rep	CDS	32192093	32192164	.	+	0	Parent=Os01t0764700-01
Chr01	irgsp1_rep	CDS	32192253	32192348	.	+	0	Parent=Os01t0764700-01
Chr01	irgsp1_rep	CDS	32192492	32192584	.	+	0	Parent=Os01t0764700-01
Chr01	irgsp1_rep	CDS	32192748	32192816	.	+	0	Parent=Os01t0764700-01
Chr01	irgsp1_rep	three_prime_UTR	32192817	32193266	.	+	.	Parent=Os01t0764700-01
Chr01	irgsp1_rep	mRNA	32190478	32192585	.	-	.	ID=Os01t0764750-00;Name=Os01t0764750-00;Locus_id=Os01g0764750;Note=Non-protein coding transcript.;Transcript_evidence=tplb0061l01 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os01t0764750-00
Chr01	irgsp1_rep	exon	32192490	32192585	.	-	.	Parent=Os01t0764750-00
Chr01	irgsp1_rep	exon	32192253	32192346	.	-	.	Parent=Os01t0764750-00
Chr01	irgsp1_rep	exon	32192105	32192164	.	-	.	Parent=Os01t0764750-00
Chr01	irgsp1_rep	exon	32190742	32191624	.	-	.	Parent=Os01t0764750-00
Chr01	irgsp1_rep	exon	32190478	32190671	.	-	.	Parent=Os01t0764750-00
Chr01	irgsp1_rep	mRNA	32221378	32225121	.	+	.	ID=Os01t0764800-01;Name=Os01t0764800-01;Locus_id=Os01g0764800;RAP-DB Gene Symbol Synonym(s)=GH3-2%2C OsGH3-2;RAP-DB Gene Name Synonym(s)=GH3-2;CGSNL Gene Symbol=GH3-2;CGSNL Gene Name=GH3-2;Oryzabase Gene Symbol Synonym(s)=OsGH3-2%2C OsGH3.2%2C GH3.2;Note=Indole-3-acetic acid (IAA)-amido synthetase%2C Disease resistance%2C Abiotic stress tolerance;Transcript_evidence=AK102809;ORF_evidence=P0C0M2;InterPro=GH3 family (IPR004993);NIAS_FLcDNA=J033108J10;Manual Curation=February 10%2C 2017;Literature_PMID=23112280,21071600;Oryzabase=11623;Expression=AK102809;TENOR=Os01t0764800-01;KEGG=Os01t0764800-01
Chr01	irgsp1_rep	five_prime_UTR	32221378	32221470	.	+	.	Parent=Os01t0764800-01
Chr01	irgsp1_rep	CDS	32221471	32221820	.	+	0	Parent=Os01t0764800-01
Chr01	irgsp1_rep	CDS	32221989	32222090	.	+	1	Parent=Os01t0764800-01
Chr01	irgsp1_rep	CDS	32223301	32224693	.	+	1	Parent=Os01t0764800-01
Chr01	irgsp1_rep	three_prime_UTR	32224694	32225121	.	+	.	Parent=Os01t0764800-01
Chr01	irgsp1_rep	mRNA	32223295	32224590	.	-	.	ID=Os01t0764850-00;Name=Os01t0764850-00;Locus_id=Os01g0764850;Note=Hypothetical protein.;Transcript_evidence=tplb0043i20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0764850-00
Chr01	irgsp1_rep	five_prime_UTR	32224589	32224590	.	-	.	Parent=Os01t0764850-00
Chr01	irgsp1_rep	CDS	32223295	32224588	.	-	0	Parent=Os01t0764850-00
Chr01	irgsp1_rep	mRNA	32226157	32229661	.	-	.	ID=Os01t0764900-01;Name=Os01t0764900-01;Locus_id=Os01g0764900;Note=Similar to Formamidase.;Transcript_evidence=AK066328 (DDBJ%2C Best hit);ORF_evidence=B9VXW6 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds%2C in linear amides (GO:0016811);InterPro=Acetamidase/Formamidase (IPR004304);NIAS_FLcDNA=J013059B20;Expression=AK066328;TENOR=Os01t0764900-01;KEGG=Os01t0764900-01 (EC:3.5.1.49)
Chr01	irgsp1_rep	five_prime_UTR	32229633	32229661	.	-	.	Parent=Os01t0764900-01
Chr01	irgsp1_rep	CDS	32229414	32229632	.	-	0	Parent=Os01t0764900-01
Chr01	irgsp1_rep	CDS	32229072	32229309	.	-	0	Parent=Os01t0764900-01
Chr01	irgsp1_rep	CDS	32228800	32228990	.	-	2	Parent=Os01t0764900-01
Chr01	irgsp1_rep	CDS	32228341	32228576	.	-	0	Parent=Os01t0764900-01
Chr01	irgsp1_rep	CDS	32227491	32227734	.	-	1	Parent=Os01t0764900-01
Chr01	irgsp1_rep	CDS	32227298	32227405	.	-	0	Parent=Os01t0764900-01
Chr01	irgsp1_rep	CDS	32226377	32226505	.	-	0	Parent=Os01t0764900-01
Chr01	irgsp1_rep	three_prime_UTR	32226157	32226376	.	-	.	Parent=Os01t0764900-01
Chr01	irgsp1_rep	mRNA	32230712	32232641	.	-	.	ID=Os01t0764950-01;Name=Os01t0764950-01;Locus_id=Os01g0764950;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK105497 (DDBJ%2C Best hit);ORF_evidence=NP_001172580.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-127-C11;Expression=AK105497;TENOR=Os01t0764950-01;KEGG=Os01t0764950-01
Chr01	irgsp1_rep	five_prime_UTR	32232574	32232641	.	-	.	Parent=Os01t0764950-01
Chr01	irgsp1_rep	CDS	32231125	32232573	.	-	0	Parent=Os01t0764950-01
Chr01	irgsp1_rep	three_prime_UTR	32230712	32231124	.	-	.	Parent=Os01t0764950-01
Chr01	irgsp1_rep	mRNA	32233186	32238980	.	-	.	ID=Os01t0765000-01;Name=Os01t0765000-01;Locus_id=Os01g0765000;RAP-DB Gene Symbol Synonym(s)=ST2%2C st2(gw)%2C gw%2C st2;RAP-DB Gene Name Synonym(s)=STRIPE 2%2C stripe2%2C stripe 2%2C stripe-2;CGSNL Gene Symbol=ST2;CGSNL Gene Name=STRIPE 2;Oryzabase Gene Symbol Synonym(s)=ALR%2C OsDCD%2C DCD;Oryzabase Gene Name Synonym(s)=STRIPE2%2C albinic leaf and growth retardation%2C dCMP deaminase;Note=Putative dCMP deaminase%2C Chloroplast development;Transcript_evidence=AK101905;ORF_evidence=Q5JN09;GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: hydrolase activity (GO:0016787);InterPro=Deoxycytidylate deaminase-related (IPR015517),CMP/dCMP deaminase%2C zinc-binding (IPR002125),Cytidine deaminase-like (IPR016193),APOBEC/CMP deaminase%2C zinc-binding (IPR016192);NIAS_FLcDNA=J033071E06;Manual Curation=December 18%2C 2014;Literature_PMID=25438698;Oryzabase=20547;Expression=AK101905;TENOR=Os01t0765000-01;KEGG=Os01t0765000-01 (EC:3.5.4.12)
Chr01	irgsp1_rep	five_prime_UTR	32238942	32238980	.	-	.	Parent=Os01t0765000-01
Chr01	irgsp1_rep	CDS	32238727	32238941	.	-	0	Parent=Os01t0765000-01
Chr01	irgsp1_rep	CDS	32238547	32238622	.	-	1	Parent=Os01t0765000-01
Chr01	irgsp1_rep	CDS	32237901	32237940	.	-	0	Parent=Os01t0765000-01
Chr01	irgsp1_rep	CDS	32237040	32237098	.	-	2	Parent=Os01t0765000-01
Chr01	irgsp1_rep	CDS	32236802	32236839	.	-	0	Parent=Os01t0765000-01
Chr01	irgsp1_rep	CDS	32234125	32234188	.	-	1	Parent=Os01t0765000-01
Chr01	irgsp1_rep	CDS	32233980	32234033	.	-	0	Parent=Os01t0765000-01
Chr01	irgsp1_rep	CDS	32233579	32233680	.	-	0	Parent=Os01t0765000-01
Chr01	irgsp1_rep	CDS	32233403	32233501	.	-	0	Parent=Os01t0765000-01
Chr01	irgsp1_rep	three_prime_UTR	32233186	32233402	.	-	.	Parent=Os01t0765000-01
Chr01	irgsp1_rep	mRNA	32233141	32235386	.	-	.	ID=Os01t0765000-02;Name=Os01t0765000-02;Locus_id=Os01g0765000;CGSNL Gene Symbol=ST2;CGSNL Gene Name=STRIPE 2;Oryzabase Gene Symbol Synonym(s)=ALR%2C OsDCD%2C DCD;Oryzabase Gene Name Synonym(s)=STRIPE2%2C albinic leaf and growth retardation%2C dCMP deaminase;Note=Similar to deoxycytidylate deaminase.;Transcript_evidence=AK106122 (DDBJ%2C Best hit);ORF_evidence=NP_001152254.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: hydrolase activity (GO:0016787);InterPro=CMP/dCMP deaminase%2C zinc-binding (IPR002125),Cytidine deaminase (IPR015517),Cytidine deaminase-like (IPR016193);NIAS_FLcDNA=001-207-E12;Oryzabase=20547;TENOR=Os01t0765000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	32234058	32235386	.	-	.	Parent=Os01t0765000-02
Chr01	irgsp1_rep	CDS	32233980	32234057	.	-	0	Parent=Os01t0765000-02
Chr01	irgsp1_rep	CDS	32233579	32233680	.	-	0	Parent=Os01t0765000-02
Chr01	irgsp1_rep	CDS	32233403	32233501	.	-	0	Parent=Os01t0765000-02
Chr01	irgsp1_rep	three_prime_UTR	32233141	32233402	.	-	.	Parent=Os01t0765000-02
Chr01	irgsp1_rep	mRNA	32241235	32244856	.	+	.	ID=Os01t0765200-01;Name=Os01t0765200-01;Locus_id=Os01g0765200;Note=Conserved hypothetical protein.;Transcript_evidence=AK106232 (DDBJ%2C Best hit);ORF_evidence=B8AA45 (UniProt);NIAS_FLcDNA=002-100-B07;TENOR=Os01t0765200-01
Chr01	irgsp1_rep	five_prime_UTR	32241235	32241329	.	+	.	Parent=Os01t0765200-01
Chr01	irgsp1_rep	CDS	32241330	32241678	.	+	0	Parent=Os01t0765200-01
Chr01	irgsp1_rep	CDS	32243096	32243835	.	+	2	Parent=Os01t0765200-01
Chr01	irgsp1_rep	CDS	32244651	32244856	.	+	0	Parent=Os01t0765200-01
Chr01	irgsp1_rep	mRNA	32245206	32250127	.	+	.	ID=Os01t0765300-01;Name=Os01t0765300-01;Locus_id=Os01g0765300;Note=RNA recognition motif domain domain containing protein.;Transcript_evidence=AK101759 (DDBJ%2C Best hit);ORF_evidence=B9ET64 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677),Spen paralogue and orthologue SPOC%2C C-terminal (IPR012921);NIAS_FLcDNA=J033063O04;TENOR=Os01t0765300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	32245206	32246005	.	+	0	Parent=Os01t0765300-01
Chr01	irgsp1_rep	CDS	32247141	32247202	.	+	1	Parent=Os01t0765300-01
Chr01	irgsp1_rep	CDS	32247286	32247886	.	+	2	Parent=Os01t0765300-01
Chr01	irgsp1_rep	CDS	32247971	32248052	.	+	1	Parent=Os01t0765300-01
Chr01	irgsp1_rep	CDS	32249555	32249602	.	+	0	Parent=Os01t0765300-01
Chr01	irgsp1_rep	CDS	32249704	32249907	.	+	0	Parent=Os01t0765300-01
Chr01	irgsp1_rep	three_prime_UTR	32249908	32250127	.	+	.	Parent=Os01t0765300-01
Chr01	irgsp1_rep	mRNA	32249975	32251602	.	-	.	ID=Os01t0765400-01;Name=Os01t0765400-01;Locus_id=Os01g0765400;Oryzabase Gene Symbol Synonym(s)=OsSRP-LGC%2C OrysaZ1;Oryzabase Gene Name Synonym(s)=Serpin-Z1;Note=Protease inhibitor I4%2C serpin%2C plant domain containing protein.;Transcript_evidence=AK106246 (DDBJ%2C Best hit);ORF_evidence=Q94DW6 (UniProt);GO=Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Protease inhibitor I4%2C serpin (IPR000215),Protease inhibitor I4%2C serpin%2C plant (IPR015554),Protease inhibitor I4%2C serpin%2C conserved site (IPR023795),Serpin domain (IPR023796);NIAS_FLcDNA=002-100-D07;Oryzabase=11580;Expression=AK106246;TENOR=Os01t0765400-01;KEGG=Os01t0765400-01
Chr01	irgsp1_rep	five_prime_UTR	32251602	32251602	.	-	.	Parent=Os01t0765400-01
Chr01	irgsp1_rep	CDS	32251191	32251601	.	-	0	Parent=Os01t0765400-01
Chr01	irgsp1_rep	CDS	32250237	32251061	.	-	0	Parent=Os01t0765400-01
Chr01	irgsp1_rep	three_prime_UTR	32249975	32250236	.	-	.	Parent=Os01t0765400-01
Chr01	irgsp1_rep	mRNA	32252128	32255022	.	-	.	ID=Os01t0765500-01;Name=Os01t0765500-01;Locus_id=Os01g0765500;Note=Conserved hypothetical protein.;Transcript_evidence=AK063269 (DDBJ%2C Best hit);ORF_evidence=A2WVE8 (UniProt);NIAS_FLcDNA=001-113-B09;Expression=AK063269;TENOR=Os01t0765500-01;KEGG=Os01t0765500-01
Chr01	irgsp1_rep	five_prime_UTR	32254905	32255022	.	-	.	Parent=Os01t0765500-01
Chr01	irgsp1_rep	CDS	32254874	32254904	.	-	0	Parent=Os01t0765500-01
Chr01	irgsp1_rep	CDS	32252757	32254759	.	-	2	Parent=Os01t0765500-01
Chr01	irgsp1_rep	CDS	32252467	32252559	.	-	0	Parent=Os01t0765500-01
Chr01	irgsp1_rep	three_prime_UTR	32252128	32252466	.	-	.	Parent=Os01t0765500-01
Chr01	irgsp1_rep	mRNA	32258915	32260026	.	-	.	ID=Os01t0765600-01;Name=Os01t0765600-01;Locus_id=Os01g0765600;Note=EF-Hand type domain containing protein.;Transcript_evidence=AK108944 (DDBJ%2C Best hit);ORF_evidence=A2WVE9 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=002-153-B10;Expression=AK108944;TENOR=Os01t0765600-01;KEGG=Os01t0765600-01
Chr01	irgsp1_rep	five_prime_UTR	32259951	32260026	.	-	.	Parent=Os01t0765600-01
Chr01	irgsp1_rep	CDS	32259288	32259950	.	-	0	Parent=Os01t0765600-01
Chr01	irgsp1_rep	three_prime_UTR	32258915	32259287	.	-	.	Parent=Os01t0765600-01
Chr01	irgsp1_rep	mRNA	32267055	32269458	.	+	.	ID=Os01t0765900-00;Name=Os01t0765900-00;Locus_id=Os01g0765900;CGSNL Gene Symbol=SAP3;CGSNL Gene Name=STRESS ASSOCIATED PROTEIN GENE 3;Oryzabase Gene Symbol Synonym(s)=OsSAP3;Oryzabase Gene Name Synonym(s)=stress-associated protein 3;Note=Zinc finger A20 and AN1 domain-containing stress-associated protein 3.;Transcript_evidence=Q5JN07 (UniProt);ORF_evidence=Q5JN07 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C AN1-type (IPR000058),Zinc finger%2C A20-type (IPR002653);Oryzabase=18181;TENOR=Os01t0765900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	32267055	32267267	.	+	0	Parent=Os01t0765900-00
Chr01	irgsp1_rep	CDS	32268604	32269458	.	+	0	Parent=Os01t0765900-00
Chr01	irgsp1_rep	mRNA	32270047	32272354	.	-	.	ID=Os01t0766000-00;Name=Os01t0766000-00;Locus_id=Os01g0766000;Note=Multi antimicrobial extrusion protein MatE family protein.;Transcript_evidence=BT055881 (DDBJ);ORF_evidence=NP_173744.1 (RefSeq);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);TENOR=Os01t0766000-00;KEGG=Os01t0766000-00
Chr01	irgsp1_rep	CDS	32271920	32272354	.	-	0	Parent=Os01t0766000-00
Chr01	irgsp1_rep	CDS	32271287	32271828	.	-	0	Parent=Os01t0766000-00
Chr01	irgsp1_rep	CDS	32271112	32271198	.	-	1	Parent=Os01t0766000-00
Chr01	irgsp1_rep	CDS	32270961	32271017	.	-	1	Parent=Os01t0766000-00
Chr01	irgsp1_rep	CDS	32270628	32270866	.	-	1	Parent=Os01t0766000-00
Chr01	irgsp1_rep	CDS	32270401	32270519	.	-	2	Parent=Os01t0766000-00
Chr01	irgsp1_rep	CDS	32270219	32270305	.	-	0	Parent=Os01t0766000-00
Chr01	irgsp1_rep	CDS	32270054	32270128	.	-	0	Parent=Os01t0766000-00
Chr01	irgsp1_rep	three_prime_UTR	32270047	32270053	.	-	.	Parent=Os01t0766000-00
Chr01	irgsp1_rep	mRNA	32270441	32272167	.	+	.	ID=Os01t0766101-00;Name=Os01t0766101-00;Locus_id=Os01g0766101;Note=Hypothetical gene.;Transcript_evidence=tplb0060k11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0766101-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	32270441	32270528	.	+	.	Parent=Os01t0766101-00
Chr01	irgsp1_rep	five_prime_UTR	32270635	32270880	.	+	.	Parent=Os01t0766101-00
Chr01	irgsp1_rep	five_prime_UTR	32271165	32271268	.	+	.	Parent=Os01t0766101-00
Chr01	irgsp1_rep	CDS	32271269	32271565	.	+	0	Parent=Os01t0766101-00
Chr01	irgsp1_rep	three_prime_UTR	32271566	32271828	.	+	.	Parent=Os01t0766101-00
Chr01	irgsp1_rep	three_prime_UTR	32271920	32272167	.	+	.	Parent=Os01t0766101-00
Chr01	irgsp1_rep	mRNA	32276583	32278225	.	-	.	ID=Os01t0766200-01;Name=Os01t0766200-01;Locus_id=Os01g0766200;CGSNL Gene Symbol=RDCP3;CGSNL Gene Name=RING DOMAIN-CONTAINING PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsRDCP3;Oryzabase Gene Name Synonym(s)=RING domain-containing protein 3;Note=Similar to RING finger protein 5.;Transcript_evidence=AK069471 (DDBJ%2C Best hit);ORF_evidence=B6TI40 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J023023M16;Oryzabase=9451;TENOR=Os01t0766200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	32278111	32278225	.	-	.	Parent=Os01t0766200-01
Chr01	irgsp1_rep	CDS	32277884	32278110	.	-	0	Parent=Os01t0766200-01
Chr01	irgsp1_rep	CDS	32276931	32277621	.	-	1	Parent=Os01t0766200-01
Chr01	irgsp1_rep	three_prime_UTR	32276583	32276930	.	-	.	Parent=Os01t0766200-01
Chr01	irgsp1_rep	mRNA	32276649	32278225	.	-	.	ID=Os01t0766200-02;Name=Os01t0766200-02;Locus_id=Os01g0766200;CGSNL Gene Symbol=RDCP3;CGSNL Gene Name=RING DOMAIN-CONTAINING PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsRDCP3;Oryzabase Gene Name Synonym(s)=RING domain-containing protein 3;Note=Similar to RING finger protein 5.;Transcript_evidence=AK070278 (DDBJ%2C Best hit);ORF_evidence=B6TI40 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J023049F08;Oryzabase=9451;TENOR=Os01t0766200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	32277651	32278225	.	-	.	Parent=Os01t0766200-02
Chr01	irgsp1_rep	CDS	32276931	32277650	.	-	0	Parent=Os01t0766200-02
Chr01	irgsp1_rep	three_prime_UTR	32276649	32276930	.	-	.	Parent=Os01t0766200-02
Chr01	irgsp1_rep	mRNA	32289147	32289742	.	-	.	ID=Os01t0766300-00;Name=Os01t0766300-00;Locus_id=Os01g0766300;Note=Conserved hypothetical protein.;Transcript_evidence=AK370485 (DDBJ);ORF_evidence=NP_001044355.1 (RefSeq);TENOR=Os01t0766300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	32289696	32289742	.	-	.	Parent=Os01t0766300-00
Chr01	irgsp1_rep	CDS	32289147	32289695	.	-	0	Parent=Os01t0766300-00
Chr01	irgsp1_rep	mRNA	32293824	32295257	.	+	.	ID=Os01t0766400-01;Name=Os01t0766400-01;Locus_id=Os01g0766400;Note=Conserved hypothetical protein.;Transcript_evidence=AK073493 (DDBJ%2C Best hit);ORF_evidence=A2WVF4 (UniProt);NIAS_FLcDNA=J033042A17;Expression=AK073493;TENOR=Os01t0766400-01;KEGG=Os01t0766400-01
Chr01	irgsp1_rep	five_prime_UTR	32293824	32293863	.	+	.	Parent=Os01t0766400-01
Chr01	irgsp1_rep	CDS	32293864	32294007	.	+	0	Parent=Os01t0766400-01
Chr01	irgsp1_rep	CDS	32294114	32294209	.	+	0	Parent=Os01t0766400-01
Chr01	irgsp1_rep	CDS	32294308	32294433	.	+	0	Parent=Os01t0766400-01
Chr01	irgsp1_rep	CDS	32294520	32294559	.	+	0	Parent=Os01t0766400-01
Chr01	irgsp1_rep	CDS	32294699	32294751	.	+	2	Parent=Os01t0766400-01
Chr01	irgsp1_rep	three_prime_UTR	32294752	32295257	.	+	.	Parent=Os01t0766400-01
Chr01	irgsp1_rep	mRNA	32298893	32303035	.	+	.	ID=Os01t0766600-01;Name=Os01t0766600-01;Locus_id=Os01g0766600;Note=BSD domain containing protein.;Transcript_evidence=AK103570 (DDBJ%2C Best hit);ORF_evidence=NP_001149272.1 (RefSeq);InterPro=BSD (IPR005607);NIAS_FLcDNA=J033132M15;Expression=AK103570;TENOR=Os01t0766600-01;KEGG=Os01t0766600-01
Chr01	irgsp1_rep	five_prime_UTR	32298893	32298984	.	+	.	Parent=Os01t0766600-01
Chr01	irgsp1_rep	CDS	32298985	32299546	.	+	0	Parent=Os01t0766600-01
Chr01	irgsp1_rep	CDS	32301001	32301188	.	+	2	Parent=Os01t0766600-01
Chr01	irgsp1_rep	CDS	32302258	32302701	.	+	0	Parent=Os01t0766600-01
Chr01	irgsp1_rep	three_prime_UTR	32302702	32303035	.	+	.	Parent=Os01t0766600-01
Chr01	irgsp1_rep	mRNA	32298915	32303024	.	+	.	ID=Os01t0766600-02;Name=Os01t0766600-02;Locus_id=Os01g0766600;Note=BSD domain containing protein.;Transcript_evidence=AK061986 (DDBJ%2C Best hit);ORF_evidence=NP_001149272.1 (RefSeq);InterPro=BSD (IPR005607);NIAS_FLcDNA=001-043-B06;Expression=AK061986;TENOR=Os01t0766600-02;KEGG=Os01t0766600-02
Chr01	irgsp1_rep	five_prime_UTR	32298915	32298984	.	+	.	Parent=Os01t0766600-02
Chr01	irgsp1_rep	CDS	32298985	32299546	.	+	0	Parent=Os01t0766600-02
Chr01	irgsp1_rep	CDS	32301001	32301188	.	+	2	Parent=Os01t0766600-02
Chr01	irgsp1_rep	CDS	32302258	32302701	.	+	0	Parent=Os01t0766600-02
Chr01	irgsp1_rep	three_prime_UTR	32302702	32303024	.	+	.	Parent=Os01t0766600-02
Chr01	irgsp1_rep	mRNA	32318616	32319527	.	-	.	ID=Os01t0766900-01;Name=Os01t0766900-01;Locus_id=Os01g0766900;CGSNL Gene Symbol=CSLC1;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE C1;Oryzabase Gene Symbol Synonym(s)=OsCslC1%2C OsCSLC1;Note=Hypothetical protein.;Transcript_evidence=AK110759 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=002-170-H04;Oryzabase=9066;TENOR=Os01t0766900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	32319525	32319527	.	-	.	Parent=Os01t0766900-01
Chr01	irgsp1_rep	CDS	32319006	32319524	.	-	0	Parent=Os01t0766900-01
Chr01	irgsp1_rep	three_prime_UTR	32318616	32319005	.	-	.	Parent=Os01t0766900-01
Chr01	irgsp1_rep	mRNA	32321709	32322680	.	+	.	ID=Os01t0766966-00;Name=Os01t0766966-00;Locus_id=Os01g0766966;Note=Hypothetical gene.;Transcript_evidence=BT066271 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0766966-00;KEGG=Os01t0766966-00
Chr01	irgsp1_rep	five_prime_UTR	32321709	32321972	.	+	.	Parent=Os01t0766966-00
Chr01	irgsp1_rep	CDS	32321973	32322680	.	+	0	Parent=Os01t0766966-00
Chr01	irgsp1_rep	mRNA	32327830	32332777	.	-	.	ID=Os01t0767000-01;Name=Os01t0767000-01;Locus_id=Os01g0767000;RAP-DB Gene Symbol Synonym(s)=OsNMCP1;RAP-DB Gene Name Synonym(s)=Nuclear Matrix Constituent Protein 1;CGSNL Gene Symbol=NMCP1;CGSNL Gene Name=NUCLEAR MATRIX CONSTITUENT PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsNMCP1;Oryzabase Gene Name Synonym(s)=Nuclear Matrix Constituent Protein 1;Note=Lamin-like protein%2C Drought resistance%2C Modulation of root growth;Transcript_evidence=AK242478 (truncated),Inferred from literature;ORF_evidence=Q0JJ05;NIAS_FLcDNA=J080304H12 (truncated);Manual Curation=March 6%2C 2020;Literature_PMID=32129897;Oryzabase=23579;TENOR=Os01t0767000-01;KEGG=Os01t0767000-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=nuclear periphery (GO:0034399)
Chr01	irgsp1_rep	five_prime_UTR	32332767	32332777	.	-	.	Parent=Os01t0767000-01
Chr01	irgsp1_rep	CDS	32332581	32332766	.	-	0	Parent=Os01t0767000-01
Chr01	irgsp1_rep	CDS	32331451	32331660	.	-	0	Parent=Os01t0767000-01
Chr01	irgsp1_rep	CDS	32331036	32331289	.	-	0	Parent=Os01t0767000-01
Chr01	irgsp1_rep	CDS	32330576	32330846	.	-	1	Parent=Os01t0767000-01
Chr01	irgsp1_rep	CDS	32330412	32330495	.	-	0	Parent=Os01t0767000-01
Chr01	irgsp1_rep	CDS	32328717	32330332	.	-	0	Parent=Os01t0767000-01
Chr01	irgsp1_rep	CDS	32328398	32328614	.	-	1	Parent=Os01t0767000-01
Chr01	irgsp1_rep	CDS	32328173	32328298	.	-	0	Parent=Os01t0767000-01
Chr01	irgsp1_rep	three_prime_UTR	32327830	32328172	.	-	.	Parent=Os01t0767000-01
Chr01	irgsp1_rep	mRNA	32334681	32338053	.	-	.	ID=Os01t0767100-01;Name=Os01t0767100-01;Locus_id=Os01g0767100;Oryzabase Gene Symbol Synonym(s)=OsProCP1%2C PROCP1;Oryzabase Gene Name Synonym(s)=Lysosomal Pro-x Carboxypeptidase 1%2C LYSOSOMAL PRO-X CARBOXYPEPTIDASE 1;Note=Similar to Lysosomal Pro-X carboxypeptidase.;Transcript_evidence=AK109493 (DDBJ%2C Best hit);ORF_evidence=NP_201377.2 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type peptidase activity (GO:0008236);InterPro=Peptidase S28 (IPR008758);NIAS_FLcDNA=001-205-E09;Oryzabase=20049;Expression=AK109493;TENOR=Os01t0767100-01;KEGG=Os01t0767100-01 (EC:3.4.16.2)
Chr01	irgsp1_rep	five_prime_UTR	32337975	32338053	.	-	.	Parent=Os01t0767100-01
Chr01	irgsp1_rep	CDS	32337591	32337974	.	-	0	Parent=Os01t0767100-01
Chr01	irgsp1_rep	CDS	32337308	32337494	.	-	0	Parent=Os01t0767100-01
Chr01	irgsp1_rep	CDS	32337029	32337162	.	-	2	Parent=Os01t0767100-01
Chr01	irgsp1_rep	CDS	32336828	32336940	.	-	0	Parent=Os01t0767100-01
Chr01	irgsp1_rep	CDS	32336619	32336742	.	-	1	Parent=Os01t0767100-01
Chr01	irgsp1_rep	CDS	32336247	32336396	.	-	0	Parent=Os01t0767100-01
Chr01	irgsp1_rep	CDS	32335935	32336087	.	-	0	Parent=Os01t0767100-01
Chr01	irgsp1_rep	CDS	32335586	32335665	.	-	0	Parent=Os01t0767100-01
Chr01	irgsp1_rep	CDS	32335424	32335473	.	-	1	Parent=Os01t0767100-01
Chr01	irgsp1_rep	CDS	32334933	32335111	.	-	2	Parent=Os01t0767100-01
Chr01	irgsp1_rep	three_prime_UTR	32334681	32334932	.	-	.	Parent=Os01t0767100-01
Chr01	irgsp1_rep	mRNA	32346889	32350070	.	+	.	ID=Os01t0767600-01;Name=Os01t0767600-01;Locus_id=Os01g0767600;Note=Conserved hypothetical protein.;Transcript_evidence=AK070672 (DDBJ%2C Best hit);ORF_evidence=A2WVG5 (UniProt);NIAS_FLcDNA=J023059I06;Expression=AK070672;TENOR=Os01t0767600-01;KEGG=Os01t0767600-01
Chr01	irgsp1_rep	five_prime_UTR	32346889	32346967	.	+	.	Parent=Os01t0767600-01
Chr01	irgsp1_rep	CDS	32346968	32347102	.	+	0	Parent=Os01t0767600-01
Chr01	irgsp1_rep	CDS	32347224	32347574	.	+	0	Parent=Os01t0767600-01
Chr01	irgsp1_rep	CDS	32349110	32349892	.	+	0	Parent=Os01t0767600-01
Chr01	irgsp1_rep	three_prime_UTR	32349893	32350070	.	+	.	Parent=Os01t0767600-01
Chr01	irgsp1_rep	mRNA	32350513	32360564	.	+	.	ID=Os01t0767700-01;Name=Os01t0767700-01;Locus_id=Os01g0767700;Oryzabase Gene Symbol Synonym(s)=RNAhA;Oryzabase Gene Name Synonym(s)=RNA helicase A;Note=Similar to DEIH-box RNA/DNA helicase.;Transcript_evidence=AK122168 (DDBJ%2C Best hit);ORF_evidence=NP_850154.2 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=Single-stranded nucleic acid binding R3H (IPR001374),Helicase%2C C-terminal (IPR001650),Ankyrin repeat (IPR002110),Helicase-associated domain (IPR007502),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),Domain of unknown function DUF1605 (IPR011709),DEAD-like helicase (IPR014001),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J033148A12;Oryzabase=11605;Expression=AK122168;TENOR=Os01t0767700-01;KEGG=Os01t0767700-01
Chr01	irgsp1_rep	five_prime_UTR	32350513	32350687	.	+	.	Parent=Os01t0767700-01
Chr01	irgsp1_rep	CDS	32350688	32350880	.	+	0	Parent=Os01t0767700-01
Chr01	irgsp1_rep	CDS	32352071	32352161	.	+	2	Parent=Os01t0767700-01
Chr01	irgsp1_rep	CDS	32352326	32352635	.	+	1	Parent=Os01t0767700-01
Chr01	irgsp1_rep	CDS	32352765	32352839	.	+	0	Parent=Os01t0767700-01
Chr01	irgsp1_rep	CDS	32353212	32353256	.	+	0	Parent=Os01t0767700-01
Chr01	irgsp1_rep	CDS	32353631	32353721	.	+	0	Parent=Os01t0767700-01
Chr01	irgsp1_rep	CDS	32353802	32353860	.	+	2	Parent=Os01t0767700-01
Chr01	irgsp1_rep	CDS	32354363	32354524	.	+	0	Parent=Os01t0767700-01
Chr01	irgsp1_rep	CDS	32355327	32355379	.	+	0	Parent=Os01t0767700-01
Chr01	irgsp1_rep	CDS	32355466	32355499	.	+	1	Parent=Os01t0767700-01
Chr01	irgsp1_rep	CDS	32355908	32355997	.	+	0	Parent=Os01t0767700-01
Chr01	irgsp1_rep	CDS	32356076	32357077	.	+	0	Parent=Os01t0767700-01
Chr01	irgsp1_rep	CDS	32357219	32357777	.	+	0	Parent=Os01t0767700-01
Chr01	irgsp1_rep	CDS	32358615	32359114	.	+	2	Parent=Os01t0767700-01
Chr01	irgsp1_rep	CDS	32359535	32359942	.	+	0	Parent=Os01t0767700-01
Chr01	irgsp1_rep	three_prime_UTR	32359943	32360564	.	+	.	Parent=Os01t0767700-01
Chr01	irgsp1_rep	mRNA	32350513	32360536	.	+	.	ID=Os01t0767700-02;Name=Os01t0767700-02;Locus_id=Os01g0767700;Oryzabase Gene Symbol Synonym(s)=RNAhA;Oryzabase Gene Name Synonym(s)=RNA helicase A;Note=Similar to predicted protein.;Transcript_evidence=AK121269 (DDBJ%2C Best hit);ORF_evidence=NP_850154.2 (RefSeq);GO=Biological Process: transport (GO:0006810),Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: ATP binding (GO:0005524);InterPro=Single-stranded nucleic acid binding R3H (IPR001374),Type II secretion system protein E (IPR001482),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J023105K13;Oryzabase=11605;Expression=AK121269;TENOR=Os01t0767700-02;KEGG=Os01t0767700-02
Chr01	irgsp1_rep	five_prime_UTR	32350513	32350687	.	+	.	Parent=Os01t0767700-02
Chr01	irgsp1_rep	CDS	32350688	32350880	.	+	0	Parent=Os01t0767700-02
Chr01	irgsp1_rep	CDS	32352071	32352161	.	+	2	Parent=Os01t0767700-02
Chr01	irgsp1_rep	CDS	32352326	32352635	.	+	1	Parent=Os01t0767700-02
Chr01	irgsp1_rep	CDS	32352765	32352839	.	+	0	Parent=Os01t0767700-02
Chr01	irgsp1_rep	CDS	32353212	32353256	.	+	0	Parent=Os01t0767700-02
Chr01	irgsp1_rep	CDS	32353631	32353721	.	+	0	Parent=Os01t0767700-02
Chr01	irgsp1_rep	CDS	32353802	32353860	.	+	2	Parent=Os01t0767700-02
Chr01	irgsp1_rep	CDS	32354363	32354554	.	+	0	Parent=Os01t0767700-02
Chr01	irgsp1_rep	three_prime_UTR	32354555	32355379	.	+	.	Parent=Os01t0767700-02
Chr01	irgsp1_rep	three_prime_UTR	32355466	32355499	.	+	.	Parent=Os01t0767700-02
Chr01	irgsp1_rep	three_prime_UTR	32355908	32355997	.	+	.	Parent=Os01t0767700-02
Chr01	irgsp1_rep	three_prime_UTR	32356076	32357077	.	+	.	Parent=Os01t0767700-02
Chr01	irgsp1_rep	three_prime_UTR	32357219	32357777	.	+	.	Parent=Os01t0767700-02
Chr01	irgsp1_rep	three_prime_UTR	32358615	32359114	.	+	.	Parent=Os01t0767700-02
Chr01	irgsp1_rep	three_prime_UTR	32359535	32360536	.	+	.	Parent=Os01t0767700-02
Chr01	irgsp1_rep	mRNA	32356359	32360559	.	+	.	ID=Os01t0767700-03;Name=Os01t0767700-03;Locus_id=Os01g0767700;Oryzabase Gene Symbol Synonym(s)=RNAhA;Oryzabase Gene Name Synonym(s)=RNA helicase A;Note=Similar to predicted protein.;Transcript_evidence=AK068819 (DDBJ%2C Best hit);ORF_evidence=NP_850154.2 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524);InterPro=Helicase%2C C-terminal (IPR001650),Helicase-associated domain (IPR007502),Domain of unknown function DUF1605 (IPR011709),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J013165H02;Oryzabase=11605;Expression=AK068819;TENOR=Os01t0767700-03;KEGG=Os01t0767700-03
Chr01	irgsp1_rep	five_prime_UTR	32356359	32356360	.	+	.	Parent=Os01t0767700-03
Chr01	irgsp1_rep	CDS	32356361	32357077	.	+	0	Parent=Os01t0767700-03
Chr01	irgsp1_rep	CDS	32357219	32357777	.	+	0	Parent=Os01t0767700-03
Chr01	irgsp1_rep	CDS	32358615	32359114	.	+	2	Parent=Os01t0767700-03
Chr01	irgsp1_rep	CDS	32359535	32359942	.	+	0	Parent=Os01t0767700-03
Chr01	irgsp1_rep	three_prime_UTR	32359943	32360559	.	+	.	Parent=Os01t0767700-03
Chr01	irgsp1_rep	mRNA	32367736	32371643	.	+	.	ID=Os01t0767900-01;Name=Os01t0767900-01;Locus_id=Os01g0767900;CGSNL Gene Symbol=NH2;CGSNL Gene Name=NPR1 HOMOLOG 2;Oryzabase Gene Symbol Synonym(s)=OsNH2%2C OsNPR2%2C NPR2%2C OsNPR2/NH2%2C DLN21%2C OsDLN21;Oryzabase Gene Name Synonym(s)=NPR1-like 2%2C NPR1 homologue 2%2C nonexpresser of PR genes 2%2C Arabidopsis NPR1 homolog 2%2C non-expressor of pathogenesis-related gene2%2C DLN repressor 21%2C DLN motif protein 21;Note=Similar to Ankyrin repeat BTB/POZ domain-containing protein.;Transcript_evidence=AK067198 (DDBJ%2C Best hit);ORF_evidence=NP_001147587.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),Ankyrin repeat (IPR002110),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),Ankyrin repeat-containing domain (IPR020683),NPR1/NIM1-like%2C C-terminal (IPR021094),Domain of unknown function DUF3420 (IPR024228);NIAS_FLcDNA=J013098D13;Oryzabase=9820;Expression=AK067198;TENOR=Os01t0767900-01;KEGG=Os01t0767900-01
Chr01	irgsp1_rep	five_prime_UTR	32367736	32368218	.	+	.	Parent=Os01t0767900-01
Chr01	irgsp1_rep	CDS	32368219	32368920	.	+	0	Parent=Os01t0767900-01
Chr01	irgsp1_rep	CDS	32369461	32370211	.	+	0	Parent=Os01t0767900-01
Chr01	irgsp1_rep	CDS	32370413	32370607	.	+	2	Parent=Os01t0767900-01
Chr01	irgsp1_rep	CDS	32371095	32371354	.	+	2	Parent=Os01t0767900-01
Chr01	irgsp1_rep	three_prime_UTR	32371355	32371643	.	+	.	Parent=Os01t0767900-01
Chr01	irgsp1_rep	mRNA	32368410	32371318	.	-	.	ID=Os01t0767966-00;Name=Os01t0767966-00;Locus_id=Os01g0767966;Note=Hypothetical protein.;Transcript_evidence=tplb0036n13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0767966-00
Chr01	irgsp1_rep	five_prime_UTR	32371294	32371318	.	-	.	Parent=Os01t0767966-00
Chr01	irgsp1_rep	CDS	32371115	32371293	.	-	0	Parent=Os01t0767966-00
Chr01	irgsp1_rep	CDS	32370394	32370627	.	-	1	Parent=Os01t0767966-00
Chr01	irgsp1_rep	CDS	32370180	32370192	.	-	1	Parent=Os01t0767966-00
Chr01	irgsp1_rep	three_prime_UTR	32369419	32370179	.	-	.	Parent=Os01t0767966-00
Chr01	irgsp1_rep	three_prime_UTR	32368410	32368994	.	-	.	Parent=Os01t0767966-00
Chr01	irgsp1_rep	mRNA	32379784	32380582	.	-	.	ID=Os01t0768100-01;Name=Os01t0768100-01;Locus_id=Os01g0768100;Note=Conserved hypothetical protein.;Transcript_evidence=AK119989 (DDBJ%2C Best hit);ORF_evidence=A2WVG9 (UniProt);NIAS_FLcDNA=002-184-G04;Expression=AK119989;TENOR=Os01t0768100-01;KEGG=Os01t0768100-01
Chr01	irgsp1_rep	five_prime_UTR	32380533	32380582	.	-	.	Parent=Os01t0768100-01
Chr01	irgsp1_rep	CDS	32380047	32380532	.	-	0	Parent=Os01t0768100-01
Chr01	irgsp1_rep	three_prime_UTR	32379784	32380046	.	-	.	Parent=Os01t0768100-01
Chr01	irgsp1_rep	mRNA	32381348	32385675	.	-	.	ID=Os01t0768200-01;Name=Os01t0768200-01;Locus_id=Os01g0768200;Note=TRAM%2C LAG1 and CLN8 homology domain containing protein.;Transcript_evidence=AK103291 (DDBJ%2C Best hit);ORF_evidence=NP_001149791.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=TRAM/LAG1/CLN8 homology domain (IPR006634);NIAS_FLcDNA=J033124P21;Expression=AK103291;TENOR=Os01t0768200-01;KEGG=Os01t0768200-01
Chr01	irgsp1_rep	five_prime_UTR	32385415	32385675	.	-	.	Parent=Os01t0768200-01
Chr01	irgsp1_rep	five_prime_UTR	32384187	32384203	.	-	.	Parent=Os01t0768200-01
Chr01	irgsp1_rep	CDS	32384046	32384186	.	-	0	Parent=Os01t0768200-01
Chr01	irgsp1_rep	CDS	32382965	32383053	.	-	0	Parent=Os01t0768200-01
Chr01	irgsp1_rep	CDS	32382749	32382884	.	-	1	Parent=Os01t0768200-01
Chr01	irgsp1_rep	CDS	32382576	32382650	.	-	0	Parent=Os01t0768200-01
Chr01	irgsp1_rep	CDS	32382314	32382435	.	-	0	Parent=Os01t0768200-01
Chr01	irgsp1_rep	CDS	32382149	32382224	.	-	1	Parent=Os01t0768200-01
Chr01	irgsp1_rep	CDS	32381786	32381845	.	-	0	Parent=Os01t0768200-01
Chr01	irgsp1_rep	CDS	32381572	32381700	.	-	0	Parent=Os01t0768200-01
Chr01	irgsp1_rep	three_prime_UTR	32381348	32381571	.	-	.	Parent=Os01t0768200-01
Chr01	irgsp1_rep	mRNA	32386510	32388520	.	-	.	ID=Os01t0768300-00;Name=Os01t0768300-00;Locus_id=Os01g0768300;Note=Similar to predicted protein.;Transcript_evidence=EU974224 (DDBJ);ORF_evidence=Q5ZAQ8 (UniProt);TENOR=Os01t0768300-00;KEGG=Os01t0768300-00
Chr01	irgsp1_rep	CDS	32388212	32388520	.	-	0	Parent=Os01t0768300-00
Chr01	irgsp1_rep	CDS	32388021	32388089	.	-	0	Parent=Os01t0768300-00
Chr01	irgsp1_rep	CDS	32387845	32387898	.	-	0	Parent=Os01t0768300-00
Chr01	irgsp1_rep	CDS	32387661	32387724	.	-	0	Parent=Os01t0768300-00
Chr01	irgsp1_rep	CDS	32387460	32387543	.	-	2	Parent=Os01t0768300-00
Chr01	irgsp1_rep	CDS	32387110	32387355	.	-	2	Parent=Os01t0768300-00
Chr01	irgsp1_rep	CDS	32386937	32386982	.	-	2	Parent=Os01t0768300-00
Chr01	irgsp1_rep	CDS	32386725	32386803	.	-	1	Parent=Os01t0768300-00
Chr01	irgsp1_rep	CDS	32386510	32386602	.	-	0	Parent=Os01t0768300-00
Chr01	irgsp1_rep	mRNA	32390305	32390673	.	+	.	ID=Os01t0768333-00;Name=Os01t0768333-00;Locus_id=Os01g0768333;CGSNL Gene Symbol=SAUR2;CGSNL Gene Name=SMALL AUXIN-UP RNA 2;Oryzabase Gene Symbol Synonym(s)=OsSAUR2;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 2;Note=Auxin responsive SAUR protein family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001172581.1 (RefSeq);InterPro=Auxin responsive SAUR protein (IPR003676);Oryzabase=9127;TENOR=Os01t0768333-00;KEGG=Os01t0768333-00
Chr01	irgsp1_rep	CDS	32390305	32390673	.	+	0	Parent=Os01t0768333-00
Chr01	irgsp1_rep	mRNA	32408282	32413597	.	+	.	ID=Os01t0768600-01;Name=Os01t0768600-01;Locus_id=Os01g0768600;Note=Conserved hypothetical protein.;Transcript_evidence=AK120202 (DDBJ%2C Best hit);ORF_evidence=Q2QP23 (UniProt);NIAS_FLcDNA=J013037J18;TENOR=Os01t0768600-01
Chr01	irgsp1_rep	five_prime_UTR	32408282	32408611	.	+	.	Parent=Os01t0768600-01
Chr01	irgsp1_rep	five_prime_UTR	32408923	32408957	.	+	.	Parent=Os01t0768600-01
Chr01	irgsp1_rep	CDS	32408958	32409015	.	+	0	Parent=Os01t0768600-01
Chr01	irgsp1_rep	CDS	32411301	32411397	.	+	2	Parent=Os01t0768600-01
Chr01	irgsp1_rep	CDS	32411482	32411802	.	+	1	Parent=Os01t0768600-01
Chr01	irgsp1_rep	CDS	32411881	32411986	.	+	1	Parent=Os01t0768600-01
Chr01	irgsp1_rep	CDS	32412055	32412738	.	+	0	Parent=Os01t0768600-01
Chr01	irgsp1_rep	three_prime_UTR	32412739	32412784	.	+	.	Parent=Os01t0768600-01
Chr01	irgsp1_rep	three_prime_UTR	32413158	32413201	.	+	.	Parent=Os01t0768600-01
Chr01	irgsp1_rep	three_prime_UTR	32413316	32413597	.	+	.	Parent=Os01t0768600-01
Chr01	irgsp1_rep	mRNA	32424442	32427507	.	+	.	ID=Os01t0768700-01;Name=Os01t0768700-01;Locus_id=Os01g0768700;Note=Conserved hypothetical protein.;Transcript_evidence=AK119498 (DDBJ%2C Best hit);ORF_evidence=B8AA75 (UniProt);NIAS_FLcDNA=001-134-E04;TENOR=Os01t0768700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	32424442	32424443	.	+	.	Parent=Os01t0768700-01
Chr01	irgsp1_rep	CDS	32424444	32425172	.	+	0	Parent=Os01t0768700-01
Chr01	irgsp1_rep	CDS	32425581	32425693	.	+	0	Parent=Os01t0768700-01
Chr01	irgsp1_rep	CDS	32426167	32426449	.	+	1	Parent=Os01t0768700-01
Chr01	irgsp1_rep	three_prime_UTR	32426450	32427507	.	+	.	Parent=Os01t0768700-01
Chr01	irgsp1_rep	mRNA	32433121	32439546	.	+	.	ID=Os01t0769000-01;Name=Os01t0769000-01;Locus_id=Os01g0769000;Note=Topoisomerase II-associated protein PAT1 domain containing protein.;Transcript_evidence=AK100439 (DDBJ%2C Best hit),AK072195 (DDBJ%2C Best hit);ORF_evidence=A2ZY79 (UniProt);InterPro=Topoisomerase II-associated protein PAT1 (IPR019167);NIAS_FLcDNA=J023089F03,J013151K20;TENOR=Os01t0769000-01
Chr01	irgsp1_rep	five_prime_UTR	32433121	32433291	.	+	.	Parent=Os01t0769000-01
Chr01	irgsp1_rep	CDS	32433292	32433355	.	+	0	Parent=Os01t0769000-01
Chr01	irgsp1_rep	CDS	32433755	32433909	.	+	2	Parent=Os01t0769000-01
Chr01	irgsp1_rep	CDS	32435212	32435268	.	+	0	Parent=Os01t0769000-01
Chr01	irgsp1_rep	CDS	32436091	32436160	.	+	0	Parent=Os01t0769000-01
Chr01	irgsp1_rep	CDS	32436693	32438776	.	+	2	Parent=Os01t0769000-01
Chr01	irgsp1_rep	three_prime_UTR	32438777	32439546	.	+	.	Parent=Os01t0769000-01
Chr01	irgsp1_rep	mRNA	32436952	32439421	.	+	.	ID=Os01t0769000-02;Name=Os01t0769000-02;Locus_id=Os01g0769000;Note=Similar to predicted protein.;Transcript_evidence=AK065855 (DDBJ%2C Best hit);ORF_evidence=A2ZY79 (UniProt);InterPro=Topoisomerase II-associated protein PAT1 (IPR019167);NIAS_FLcDNA=J013042G10;Expression=AK065855;TENOR=Os01t0769000-02;KEGG=Os01t0769000-02
Chr01	irgsp1_rep	five_prime_UTR	32436952	32436952	.	+	.	Parent=Os01t0769000-02
Chr01	irgsp1_rep	CDS	32436953	32438776	.	+	0	Parent=Os01t0769000-02
Chr01	irgsp1_rep	three_prime_UTR	32438777	32439421	.	+	.	Parent=Os01t0769000-02
Chr01	irgsp1_rep	mRNA	32442999	32443312	.	+	.	ID=Os01t0769100-01;Name=Os01t0769100-01;Locus_id=Os01g0769100;Note=Non-protein coding transcript.;Transcript_evidence=AK242413 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080076L09;TENOR=Os01t0769100-01
Chr01	irgsp1_rep	exon	32442999	32443312	.	+	.	Parent=Os01t0769100-01
Chr01	irgsp1_rep	mRNA	32450917	32456504	.	+	.	ID=Os01t0769200-01;Name=Os01t0769200-01;Locus_id=Os01g0769200;Oryzabase Gene Symbol Synonym(s)=OsSub4%2C SUB4;Oryzabase Gene Name Synonym(s)=Subtilisin 4%2C SUBTILISIN 4;Note=Peptidase S8%2C subtilisin-related domain containing protein.;Transcript_evidence=AK070376 (DDBJ%2C Best hit);ORF_evidence=XP_002867881.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C  Asp-active site (IPR023827),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);NIAS_FLcDNA=J023050H13;Oryzabase=20096;Expression=AK070376;TENOR=Os01t0769200-01;KEGG=Os01t0769200-01
Chr01	irgsp1_rep	five_prime_UTR	32450917	32451216	.	+	.	Parent=Os01t0769200-01
Chr01	irgsp1_rep	CDS	32451217	32451464	.	+	0	Parent=Os01t0769200-01
Chr01	irgsp1_rep	CDS	32451901	32452054	.	+	1	Parent=Os01t0769200-01
Chr01	irgsp1_rep	CDS	32452505	32452902	.	+	0	Parent=Os01t0769200-01
Chr01	irgsp1_rep	CDS	32453218	32453313	.	+	1	Parent=Os01t0769200-01
Chr01	irgsp1_rep	CDS	32453392	32453464	.	+	1	Parent=Os01t0769200-01
Chr01	irgsp1_rep	CDS	32453596	32453878	.	+	0	Parent=Os01t0769200-01
Chr01	irgsp1_rep	CDS	32453967	32454298	.	+	2	Parent=Os01t0769200-01
Chr01	irgsp1_rep	CDS	32454384	32454654	.	+	0	Parent=Os01t0769200-01
Chr01	irgsp1_rep	CDS	32455244	32455525	.	+	2	Parent=Os01t0769200-01
Chr01	irgsp1_rep	CDS	32455848	32456260	.	+	2	Parent=Os01t0769200-01
Chr01	irgsp1_rep	three_prime_UTR	32456261	32456504	.	+	.	Parent=Os01t0769200-01
Chr01	irgsp1_rep	mRNA	32451124	32456492	.	-	.	ID=Os01t0769366-00;Name=Os01t0769366-00;Locus_id=Os01g0769366;Note=Hypothetical protein.;Transcript_evidence=tplb0025h23 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0769366-00
Chr01	irgsp1_rep	five_prime_UTR	32455859	32456492	.	-	.	Parent=Os01t0769366-00
Chr01	irgsp1_rep	five_prime_UTR	32455237	32455535	.	-	.	Parent=Os01t0769366-00
Chr01	irgsp1_rep	five_prime_UTR	32454376	32454651	.	-	.	Parent=Os01t0769366-00
Chr01	irgsp1_rep	five_prime_UTR	32453965	32454291	.	-	.	Parent=Os01t0769366-00
Chr01	irgsp1_rep	five_prime_UTR	32453575	32453875	.	-	.	Parent=Os01t0769366-00
Chr01	irgsp1_rep	five_prime_UTR	32453378	32453450	.	-	.	Parent=Os01t0769366-00
Chr01	irgsp1_rep	five_prime_UTR	32453224	32453300	.	-	.	Parent=Os01t0769366-00
Chr01	irgsp1_rep	five_prime_UTR	32452503	32452909	.	-	.	Parent=Os01t0769366-00
Chr01	irgsp1_rep	five_prime_UTR	32451905	32452052	.	-	.	Parent=Os01t0769366-00
Chr01	irgsp1_rep	CDS	32451885	32451904	.	-	0	Parent=Os01t0769366-00
Chr01	irgsp1_rep	CDS	32451124	32451450	.	-	1	Parent=Os01t0769366-00
Chr01	irgsp1_rep	mRNA	32461878	32465030	.	+	.	ID=Os01t0769700-01;Name=Os01t0769700-01;Locus_id=Os01g0769700;RAP-DB Gene Symbol Synonym(s)=DRUS2%2C YK1%2C OsCrRLK1L5;RAP-DB Gene Name Synonym(s)=DWARF AND RUNTISH SPIKELET2%2C Catharanthus roseus receptor-like kinase1-like kinase 5;CGSNL Gene Symbol=DRUS2;CGSNL Gene Name=DWARF AND RUNTISH SPIKELET2;Oryzabase Gene Symbol Synonym(s)=YK1%2C OsCrRLK1L5;Oryzabase Gene Name Synonym(s)=Catharanthus roseus receptor-like kinase1-like kinase 5%2C DWARF AND RUNTISH SPIKELET 2;Note=Receptor-like kinase%2C Control of reproductive growth and development%2C Repression of cell death;Transcript_evidence=AK101775;ORF_evidence=Q94EF4;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Malectin-like carbohydrate-binding domain (IPR024788),Concanavalin A-like lectin/glucanase domain (IPR013320),Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine-threonine/tyrosine-protein kinase catalytic domain (IPR001245),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J033064M23;Manual Curation=February 16%2C 2017;Literature_PMID=28082384;Oryzabase=15186;Expression=AK101775;TENOR=Os01t0769700-01;KEGG=Os01t0769700-01;Subcellular location=plasma membrane (GO:0005886)
Chr01	irgsp1_rep	five_prime_UTR	32461878	32462105	.	+	.	Parent=Os01t0769700-01
Chr01	irgsp1_rep	CDS	32462106	32464796	.	+	0	Parent=Os01t0769700-01
Chr01	irgsp1_rep	three_prime_UTR	32464797	32465030	.	+	.	Parent=Os01t0769700-01
Chr01	irgsp1_rep	mRNA	32463293	32465053	.	+	.	ID=Os01t0769700-02;Name=Os01t0769700-02;Locus_id=Os01g0769700;CGSNL Gene Symbol=DRUS2;CGSNL Gene Name=DWARF AND RUNTISH SPIKELET2;Oryzabase Gene Symbol Synonym(s)=YK1%2C OsCrRLK1L5;Oryzabase Gene Name Synonym(s)=Catharanthus roseus receptor-like kinase1-like kinase 5%2C DWARF AND RUNTISH SPIKELET 2;Note=Similar to predicted protein.;Transcript_evidence=AK105465 (DDBJ%2C Best hit);ORF_evidence=C6ZRT0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-126-A03;Oryzabase=15186;Expression=AK105465;TENOR=Os01t0769700-02;KEGG=Os01t0769700-02
Chr01	irgsp1_rep	five_prime_UTR	32463293	32463293	.	+	.	Parent=Os01t0769700-02
Chr01	irgsp1_rep	CDS	32463294	32464796	.	+	0	Parent=Os01t0769700-02
Chr01	irgsp1_rep	three_prime_UTR	32464797	32465053	.	+	.	Parent=Os01t0769700-02
Chr01	irgsp1_rep	mRNA	32470279	32476597	.	+	.	ID=Os01t0769900-01;Name=Os01t0769900-01;Locus_id=Os01g0769900;CGSNL Gene Symbol=TCM1;CGSNL Gene Name=THERMOSENSITIVE CHLOROPHYLL-DEFICIENT MUTANT 1;Oryzabase Gene Symbol Synonym(s)=OsTCM1;Oryzabase Gene Name Synonym(s)=thermosensitive chlorophyll-deficient mutant 1;Note=Similar to PTAC12 (PLASTID TRANSCRIPTIONALLY ACTIVE12).;Transcript_evidence=AK065563 (DDBJ%2C Best hit);ORF_evidence=NP_181011.2 (RefSeq);NIAS_FLcDNA=J013034F04;Oryzabase=22463;Expression=AK065563;TENOR=Os01t0769900-01;KEGG=Os01t0769900-01
Chr01	irgsp1_rep	five_prime_UTR	32470279	32470413	.	+	.	Parent=Os01t0769900-01
Chr01	irgsp1_rep	CDS	32470414	32470447	.	+	0	Parent=Os01t0769900-01
Chr01	irgsp1_rep	CDS	32470524	32470576	.	+	2	Parent=Os01t0769900-01
Chr01	irgsp1_rep	CDS	32470699	32471370	.	+	0	Parent=Os01t0769900-01
Chr01	irgsp1_rep	CDS	32472257	32472369	.	+	0	Parent=Os01t0769900-01
Chr01	irgsp1_rep	CDS	32472741	32473003	.	+	1	Parent=Os01t0769900-01
Chr01	irgsp1_rep	CDS	32473545	32473666	.	+	2	Parent=Os01t0769900-01
Chr01	irgsp1_rep	CDS	32473918	32473995	.	+	0	Parent=Os01t0769900-01
Chr01	irgsp1_rep	CDS	32474095	32474151	.	+	0	Parent=Os01t0769900-01
Chr01	irgsp1_rep	CDS	32474332	32474400	.	+	0	Parent=Os01t0769900-01
Chr01	irgsp1_rep	CDS	32474645	32474743	.	+	0	Parent=Os01t0769900-01
Chr01	irgsp1_rep	CDS	32475045	32475140	.	+	0	Parent=Os01t0769900-01
Chr01	irgsp1_rep	three_prime_UTR	32475141	32475180	.	+	.	Parent=Os01t0769900-01
Chr01	irgsp1_rep	three_prime_UTR	32475459	32476018	.	+	.	Parent=Os01t0769900-01
Chr01	irgsp1_rep	three_prime_UTR	32476131	32476597	.	+	.	Parent=Os01t0769900-01
Chr01	irgsp1_rep	mRNA	32475144	32479146	.	-	.	ID=Os01t0770000-01;Name=Os01t0770000-01;Locus_id=Os01g0770000;Note=Uncharacterised protein family UPF0089 domain containing protein.;Transcript_evidence=AK120549 (DDBJ%2C Best hit);ORF_evidence=A2WVH7 (UniProt);GO=Molecular Function: diacylglycerol O-acyltransferase activity (GO:0004144);InterPro=O-acyltransferase%2C WSD1%2C N-terminal (IPR004255),O-acyltransferase%2C WSD1%2C C-terminal (IPR009721);NIAS_FLcDNA=J013130A21;Expression=AK120549;TENOR=Os01t0770000-01;KEGG=Os01t0770000-01
Chr01	irgsp1_rep	five_prime_UTR	32479001	32479146	.	-	.	Parent=Os01t0770000-01
Chr01	irgsp1_rep	CDS	32478713	32479000	.	-	0	Parent=Os01t0770000-01
Chr01	irgsp1_rep	CDS	32478006	32478608	.	-	0	Parent=Os01t0770000-01
Chr01	irgsp1_rep	CDS	32477225	32477291	.	-	0	Parent=Os01t0770000-01
Chr01	irgsp1_rep	CDS	32477022	32477098	.	-	2	Parent=Os01t0770000-01
Chr01	irgsp1_rep	CDS	32476672	32476887	.	-	0	Parent=Os01t0770000-01
Chr01	irgsp1_rep	CDS	32476140	32476277	.	-	0	Parent=Os01t0770000-01
Chr01	irgsp1_rep	CDS	32475432	32475599	.	-	0	Parent=Os01t0770000-01
Chr01	irgsp1_rep	three_prime_UTR	32475144	32475431	.	-	.	Parent=Os01t0770000-01
Chr01	irgsp1_rep	mRNA	32484736	32489971	.	-	.	ID=Os01t0770100-00;Name=Os01t0770100-00;Locus_id=Os01g0770100;Note=O-acyltransferase%2C WSD1%2C N-terminal domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001044374.1 (RefSeq);GO=Molecular Function: diacylglycerol O-acyltransferase activity (GO:0004144);InterPro=O-acyltransferase%2C WSD1%2C N-terminal (IPR004255),O-acyltransferase%2C WSD1%2C C-terminal (IPR009721);TENOR=Os01t0770100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	32489642	32489971	.	-	0	Parent=Os01t0770100-00
Chr01	irgsp1_rep	CDS	32488990	32489592	.	-	0	Parent=Os01t0770100-00
Chr01	irgsp1_rep	CDS	32485967	32486182	.	-	0	Parent=Os01t0770100-00
Chr01	irgsp1_rep	CDS	32485431	32485568	.	-	0	Parent=Os01t0770100-00
Chr01	irgsp1_rep	CDS	32484736	32484903	.	-	0	Parent=Os01t0770100-00
Chr01	irgsp1_rep	mRNA	32501036	32502957	.	-	.	ID=Os01t0770200-01;Name=Os01t0770200-01;Locus_id=Os01g0770200;RAP-DB Gene Symbol Synonym(s)=TYDC%2C TyDC%2C OsTyDC%2C OsTYDC%2C TDC;RAP-DB Gene Name Synonym(s)=TYROSHINE DECARBOXYLASE%2C Tyr decarboxylase%2C tryptophan decarboxylase;CGSNL Gene Symbol=TYDC;CGSNL Gene Name=TYROSHINE DECARBOXYLASE;Oryzabase Gene Symbol Synonym(s)=TyDC%2C OsTyDC%2C OsTYDC%2C TDC%2C OsTDC3%2C TDC3;Oryzabase Gene Name Synonym(s)=Tyr decarboxylase%2C tryptophan decarboxylase;Note=Aromatic L-amino acid decarboxylase (AADC)%2C Conversion of tyrosine into tyramine;Transcript_evidence=AK065830 (Genbank);ORF_evidence=Q94EE9 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: carboxylic acid metabolic process (GO:0019752),Molecular Function: catalytic activity (GO:0003824),Molecular Function: carboxy-lyase activity (GO:0016831),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent decarboxylase (IPR002129),Aromatic-L-amino-acid decarboxylase (IPR010977),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J013041D01;Manual Curation=July 29%2C 2009;Literature_PMID=17763868,20978800;Oryzabase=10295;Expression=AK065830;TENOR=Os01t0770200-01;KEGG=Os01t0770200-01 (EC:4.1.1.25)
Chr01	irgsp1_rep	five_prime_UTR	32502835	32502957	.	-	.	Parent=Os01t0770200-01
Chr01	irgsp1_rep	CDS	32501233	32502834	.	-	0	Parent=Os01t0770200-01
Chr01	irgsp1_rep	three_prime_UTR	32501036	32501232	.	-	.	Parent=Os01t0770200-01
Chr01	irgsp1_rep	mRNA	32508406	32511902	.	-	.	ID=Os01t0770400-01;Name=Os01t0770400-01;Locus_id=Os01g0770400;Oryzabase Gene Symbol Synonym(s)=OsFbox040%2C OsFbox40%2C Os_F0476;Oryzabase Gene Name Synonym(s)=F-box protein 40;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK061585 (DDBJ%2C Best hit);ORF_evidence=NP_001151107.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=001-016-E07;Oryzabase=16839;Expression=AK061585;TENOR=Os01t0770400-01;KEGG=Os01t0770400-01
Chr01	irgsp1_rep	five_prime_UTR	32511757	32511902	.	-	.	Parent=Os01t0770400-01
Chr01	irgsp1_rep	CDS	32510566	32511756	.	-	0	Parent=Os01t0770400-01
Chr01	irgsp1_rep	three_prime_UTR	32510524	32510565	.	-	.	Parent=Os01t0770400-01
Chr01	irgsp1_rep	three_prime_UTR	32508406	32508853	.	-	.	Parent=Os01t0770400-01
Chr01	irgsp1_rep	mRNA	32508447	32511224	.	-	.	ID=Os01t0770400-02;Name=Os01t0770400-02;Locus_id=Os01g0770400;Oryzabase Gene Symbol Synonym(s)=OsFbox040%2C OsFbox40%2C Os_F0476;Oryzabase Gene Name Synonym(s)=F-box protein 40;Note=Similar to F-box domain containing protein.;Transcript_evidence=AK061253 (DDBJ%2C Best hit);ORF_evidence=NP_001151107.1 (RefSeq);NIAS_FLcDNA=006-211-H02;Oryzabase=16839;Expression=AK061253;TENOR=Os01t0770400-02;KEGG=Os01t0770400-02
Chr01	irgsp1_rep	five_prime_UTR	32511223	32511224	.	-	.	Parent=Os01t0770400-02
Chr01	irgsp1_rep	CDS	32510566	32511222	.	-	0	Parent=Os01t0770400-02
Chr01	irgsp1_rep	three_prime_UTR	32510524	32510565	.	-	.	Parent=Os01t0770400-02
Chr01	irgsp1_rep	three_prime_UTR	32508447	32508853	.	-	.	Parent=Os01t0770400-02
Chr01	irgsp1_rep	mRNA	32513694	32517028	.	-	.	ID=Os01t0770500-01;Name=Os01t0770500-01;Locus_id=Os01g0770500;CGSNL Gene Symbol=ABCI6;CGSNL Gene Name=ABC TRANSPORTER I FAMILY MEMBER 6;Oryzabase Gene Symbol Synonym(s)=OsABCI6%2C OsABCI7%2C ABCI7;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCI subgroup member 6;Note=Similar to ABC transporter ATP-binding protein.;Transcript_evidence=AK099603 (DDBJ%2C Best hit);ORF_evidence=NP_001152143.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=J013047J06;Oryzabase=12030;TENOR=Os01t0770500-01
Chr01	irgsp1_rep	five_prime_UTR	32516981	32517028	.	-	.	Parent=Os01t0770500-01
Chr01	irgsp1_rep	CDS	32516705	32516980	.	-	0	Parent=Os01t0770500-01
Chr01	irgsp1_rep	CDS	32516083	32516169	.	-	0	Parent=Os01t0770500-01
Chr01	irgsp1_rep	CDS	32514879	32515004	.	-	0	Parent=Os01t0770500-01
Chr01	irgsp1_rep	CDS	32514678	32514800	.	-	0	Parent=Os01t0770500-01
Chr01	irgsp1_rep	CDS	32513861	32514070	.	-	0	Parent=Os01t0770500-01
Chr01	irgsp1_rep	three_prime_UTR	32513694	32513860	.	-	.	Parent=Os01t0770500-01
Chr01	irgsp1_rep	mRNA	32513696	32516986	.	-	.	ID=Os01t0770500-02;Name=Os01t0770500-02;Locus_id=Os01g0770500;CGSNL Gene Symbol=ABCI6;CGSNL Gene Name=ABC TRANSPORTER I FAMILY MEMBER 6;Oryzabase Gene Symbol Synonym(s)=OsABCI6%2C OsABCI7%2C ABCI7;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCI subgroup member 6;Note=Similar to ABC transporter ATP-binding protein.;Transcript_evidence=AK071653 (DDBJ%2C Best hit);ORF_evidence=NP_001152143.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=J023102M23;Oryzabase=12030;TENOR=Os01t0770500-02
Chr01	irgsp1_rep	five_prime_UTR	32516981	32516986	.	-	.	Parent=Os01t0770500-02
Chr01	irgsp1_rep	CDS	32516705	32516980	.	-	0	Parent=Os01t0770500-02
Chr01	irgsp1_rep	CDS	32516083	32516169	.	-	0	Parent=Os01t0770500-02
Chr01	irgsp1_rep	CDS	32514879	32515004	.	-	0	Parent=Os01t0770500-02
Chr01	irgsp1_rep	CDS	32514678	32514800	.	-	0	Parent=Os01t0770500-02
Chr01	irgsp1_rep	CDS	32513861	32514070	.	-	0	Parent=Os01t0770500-02
Chr01	irgsp1_rep	three_prime_UTR	32513696	32513860	.	-	.	Parent=Os01t0770500-02
Chr01	irgsp1_rep	mRNA	32523314	32523953	.	+	.	ID=Os01t0770700-01;Name=Os01t0770700-01;Locus_id=Os01g0770700;RAP-DB Gene Symbol Synonym(s)=OsCOPT1;RAP-DB Gene Name Synonym(s)=copper transporter 1;CGSNL Gene Symbol=COPT1;CGSNL Gene Name=COPPER TRANSPORTER 1;Oryzabase Gene Symbol Synonym(s)=COPT1%2C OsCOPT1;Oryzabase Gene Name Synonym(s)=copper transporter 1;Note=High-affinity copper transport protein%2C Modulation of copper redistribution;Transcript_evidence=GQ387494 (Zhonghua 11);ORF_evidence=Q94EE4;GO=Biological Process: copper ion transmembrane transport (GO:0035434),Molecular Function: copper ion transmembrane transporter activity (GO:0005375),Cellular Component: integral component of membrane (GO:0016021);InterPro=Ctr copper transporter (IPR007274);Manual Curation=April 2%2C 2020;Literature_PMID=28631167,20852017;Oryzabase=12122;TENOR=Os01t0770700-00;Subcellular location=plasma membrane (GO:0005886)
Chr01	irgsp1_rep	five_prime_UTR	32523314	32523361	.	+	.	Parent=Os01t0770700-01
Chr01	irgsp1_rep	CDS	32523362	32523847	.	+	0	Parent=Os01t0770700-01
Chr01	irgsp1_rep	three_prime_UTR	32523848	32523953	.	+	.	Parent=Os01t0770700-01
Chr01	irgsp1_rep	mRNA	32526290	32526923	.	+	.	ID=Os01t0770800-01;Name=Os01t0770800-01;Locus_id=Os01g0770800;CGSNL Gene Symbol=COPT2;CGSNL Gene Name=COPPER TRANSPORTER 2;Oryzabase Gene Symbol Synonym(s)=COPT2%2C OsCOPT2;Oryzabase Gene Name Synonym(s)=copper transporter 2;Note=Ctr copper transporter family protein.;Transcript_evidence=AK109200 (DDBJ%2C Best hit);ORF_evidence=Q5ZD08 (UniProt);GO=Biological Process: copper ion transmembrane transport (GO:0035434),Cellular Component: integral to membrane (GO:0016021),Molecular Function: copper ion transmembrane transporter activity (GO:0005375);InterPro=Ctr copper transporter (IPR007274);NIAS_FLcDNA=002-156-C01;Oryzabase=12124;Expression=AK109200;TENOR=Os01t0770800-01;KEGG=Os01t0770800-01
Chr01	irgsp1_rep	five_prime_UTR	32526290	32526328	.	+	.	Parent=Os01t0770800-01
Chr01	irgsp1_rep	CDS	32526329	32526781	.	+	0	Parent=Os01t0770800-01
Chr01	irgsp1_rep	three_prime_UTR	32526782	32526923	.	+	.	Parent=Os01t0770800-01
Chr01	irgsp1_rep	mRNA	32534857	32535912	.	-	.	ID=Os01t0771000-01;Name=Os01t0771000-01;Locus_id=Os01g0771000;Note=Protein of unknown function DUF567 family protein.;Transcript_evidence=AK069298 (DDBJ%2C Best hit);ORF_evidence=A2WVI3 (UniProt);InterPro=Tubby%2C C-terminal (IPR000007),Protein of unknown function DUF567 (IPR007612);NIAS_FLcDNA=J023015J20;Expression=AK069298;TENOR=Os01t0771000-01;KEGG=Os01t0771000-01
Chr01	irgsp1_rep	five_prime_UTR	32535845	32535912	.	-	.	Parent=Os01t0771000-01
Chr01	irgsp1_rep	CDS	32535161	32535844	.	-	0	Parent=Os01t0771000-01
Chr01	irgsp1_rep	three_prime_UTR	32534857	32535160	.	-	.	Parent=Os01t0771000-01
Chr01	irgsp1_rep	mRNA	32538907	32541617	.	-	.	ID=Os01t0771100-01;Name=Os01t0771100-01;Locus_id=Os01g0771100;Note=Mitochondrial glycoprotein family protein.;Transcript_evidence=AK106478 (DDBJ%2C Best hit);ORF_evidence=NP_001149935.1 (RefSeq);GO=Cellular Component: mitochondrial matrix (GO:0005759);InterPro=Mitochondrial glycoprotein (IPR003428);NIAS_FLcDNA=002-104-C12;Expression=AK106478;TENOR=Os01t0771100-01;KEGG=Os01t0771100-01
Chr01	irgsp1_rep	five_prime_UTR	32541591	32541617	.	-	.	Parent=Os01t0771100-01
Chr01	irgsp1_rep	CDS	32541031	32541590	.	-	0	Parent=Os01t0771100-01
Chr01	irgsp1_rep	CDS	32539647	32539818	.	-	1	Parent=Os01t0771100-01
Chr01	irgsp1_rep	three_prime_UTR	32539646	32539646	.	-	.	Parent=Os01t0771100-01
Chr01	irgsp1_rep	three_prime_UTR	32538907	32539404	.	-	.	Parent=Os01t0771100-01
Chr01	irgsp1_rep	mRNA	32543304	32545191	.	+	.	ID=Os01t0771200-01;Name=Os01t0771200-01;Locus_id=Os01g0771200;CGSNL Gene Symbol=XB24;CGSNL Gene Name=XA21 BINDING PROTEIN 24;Oryzabase Gene Symbol Synonym(s)=XB24;Oryzabase Gene Name Synonym(s)=XA21 binding protein 24;Note=Similar to Mal d 1-associated protein.;Transcript_evidence=AK106172 (DDBJ%2C Best hit);ORF_evidence=NP_001152669.1 (RefSeq);NIAS_FLcDNA=001-208-C02;Oryzabase=11143;Expression=AK106172;TENOR=Os01t0771200-01;KEGG=Os01t0771200-01
Chr01	irgsp1_rep	five_prime_UTR	32543304	32543436	.	+	.	Parent=Os01t0771200-01
Chr01	irgsp1_rep	CDS	32543437	32543648	.	+	0	Parent=Os01t0771200-01
Chr01	irgsp1_rep	CDS	32544574	32544958	.	+	1	Parent=Os01t0771200-01
Chr01	irgsp1_rep	three_prime_UTR	32544959	32545191	.	+	.	Parent=Os01t0771200-01
Chr01	irgsp1_rep	mRNA	32547110	32547706	.	-	.	ID=Os01t0771300-01;Name=Os01t0771300-01;Locus_id=Os01g0771300;Note=Hypothetical protein.;Transcript_evidence=AK062308 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-101-B02;Expression=AK062308;TENOR=Os01t0771300-01;KEGG=Os01t0771300-01
Chr01	irgsp1_rep	five_prime_UTR	32547410	32547706	.	-	.	Parent=Os01t0771300-01
Chr01	irgsp1_rep	CDS	32547128	32547409	.	-	0	Parent=Os01t0771300-01
Chr01	irgsp1_rep	three_prime_UTR	32547110	32547127	.	-	.	Parent=Os01t0771300-01
Chr01	irgsp1_rep	mRNA	32553145	32569704	.	+	.	ID=Os01t0771350-01;Name=Os01t0771350-01;Locus_id=Os01g0771350;Note=Hypothetical gene.;Transcript_evidence=AK242694 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090036A01;TENOR=Os01t0771350-01;KEGG=Os01t0771350-01
Chr01	irgsp1_rep	five_prime_UTR	32553145	32553386	.	+	.	Parent=Os01t0771350-01
Chr01	irgsp1_rep	five_prime_UTR	32553462	32553545	.	+	.	Parent=Os01t0771350-01
Chr01	irgsp1_rep	five_prime_UTR	32553623	32553703	.	+	.	Parent=Os01t0771350-01
Chr01	irgsp1_rep	five_prime_UTR	32553876	32553992	.	+	.	Parent=Os01t0771350-01
Chr01	irgsp1_rep	five_prime_UTR	32555006	32555080	.	+	.	Parent=Os01t0771350-01
Chr01	irgsp1_rep	five_prime_UTR	32555360	32555422	.	+	.	Parent=Os01t0771350-01
Chr01	irgsp1_rep	five_prime_UTR	32555864	32555929	.	+	.	Parent=Os01t0771350-01
Chr01	irgsp1_rep	five_prime_UTR	32555996	32556067	.	+	.	Parent=Os01t0771350-01
Chr01	irgsp1_rep	five_prime_UTR	32556145	32556246	.	+	.	Parent=Os01t0771350-01
Chr01	irgsp1_rep	five_prime_UTR	32556330	32556507	.	+	.	Parent=Os01t0771350-01
Chr01	irgsp1_rep	five_prime_UTR	32556613	32556668	.	+	.	Parent=Os01t0771350-01
Chr01	irgsp1_rep	five_prime_UTR	32558320	32558430	.	+	.	Parent=Os01t0771350-01
Chr01	irgsp1_rep	five_prime_UTR	32558539	32558607	.	+	.	Parent=Os01t0771350-01
Chr01	irgsp1_rep	five_prime_UTR	32558702	32558810	.	+	.	Parent=Os01t0771350-01
Chr01	irgsp1_rep	five_prime_UTR	32558918	32559006	.	+	.	Parent=Os01t0771350-01
Chr01	irgsp1_rep	five_prime_UTR	32559140	32559217	.	+	.	Parent=Os01t0771350-01
Chr01	irgsp1_rep	five_prime_UTR	32560999	32561121	.	+	.	Parent=Os01t0771350-01
Chr01	irgsp1_rep	five_prime_UTR	32562269	32562388	.	+	.	Parent=Os01t0771350-01
Chr01	irgsp1_rep	five_prime_UTR	32562471	32562551	.	+	.	Parent=Os01t0771350-01
Chr01	irgsp1_rep	five_prime_UTR	32562623	32562769	.	+	.	Parent=Os01t0771350-01
Chr01	irgsp1_rep	five_prime_UTR	32562854	32562932	.	+	.	Parent=Os01t0771350-01
Chr01	irgsp1_rep	five_prime_UTR	32563965	32564039	.	+	.	Parent=Os01t0771350-01
Chr01	irgsp1_rep	five_prime_UTR	32564746	32564855	.	+	.	Parent=Os01t0771350-01
Chr01	irgsp1_rep	five_prime_UTR	32565726	32565824	.	+	.	Parent=Os01t0771350-01
Chr01	irgsp1_rep	five_prime_UTR	32566442	32566557	.	+	.	Parent=Os01t0771350-01
Chr01	irgsp1_rep	five_prime_UTR	32566656	32566764	.	+	.	Parent=Os01t0771350-01
Chr01	irgsp1_rep	five_prime_UTR	32566840	32566893	.	+	.	Parent=Os01t0771350-01
Chr01	irgsp1_rep	CDS	32566894	32567058	.	+	0	Parent=Os01t0771350-01
Chr01	irgsp1_rep	CDS	32567131	32567328	.	+	0	Parent=Os01t0771350-01
Chr01	irgsp1_rep	three_prime_UTR	32567329	32567396	.	+	.	Parent=Os01t0771350-01
Chr01	irgsp1_rep	three_prime_UTR	32568170	32568327	.	+	.	Parent=Os01t0771350-01
Chr01	irgsp1_rep	three_prime_UTR	32568410	32568539	.	+	.	Parent=Os01t0771350-01
Chr01	irgsp1_rep	three_prime_UTR	32569271	32569349	.	+	.	Parent=Os01t0771350-01
Chr01	irgsp1_rep	three_prime_UTR	32569548	32569704	.	+	.	Parent=Os01t0771350-01
Chr01	irgsp1_rep	mRNA	32553344	32569462	.	-	.	ID=Os01t0771400-00;Name=Os01t0771400-00;Locus_id=Os01g0771400;Oryzabase Gene Symbol Synonym(s)=OsM2%2C M2%2C OsM2a%2C OsUBP5-1%2C UBP5-1%2C OsUBP7%2C UBP7;Oryzabase Gene Name Synonym(s)=single domain MDC protein 2%2C single MATH domain containing protein 2%2C ubiquitin-specific processing protease 5-1%2C Ubiquitin-specific protease 7;Note=Similar to CM0545.290.nc protein.;Transcript_evidence=AK370602 (DDBJ);ORF_evidence=B0BLB2 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Molecular Function: ubiquitin thiolesterase activity (GO:0004221),Molecular Function: protein binding (GO:0005515);InterPro=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (IPR001394),MATH (IPR002083),TRAF-like (IPR008974),TRAF-type (IPR013322),Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2%2C conserved site (IPR018200),Peptidase C19  domain (IPR024729);Oryzabase=21183;TENOR=Os01t0771400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	32569258	32569462	.	-	0	Parent=Os01t0771400-00
Chr01	irgsp1_rep	CDS	32568410	32568539	.	-	2	Parent=Os01t0771400-00
Chr01	irgsp1_rep	CDS	32568170	32568327	.	-	1	Parent=Os01t0771400-00
Chr01	irgsp1_rep	CDS	32567131	32567396	.	-	2	Parent=Os01t0771400-00
Chr01	irgsp1_rep	CDS	32566840	32567058	.	-	0	Parent=Os01t0771400-00
Chr01	irgsp1_rep	CDS	32566656	32566764	.	-	0	Parent=Os01t0771400-00
Chr01	irgsp1_rep	CDS	32566442	32566557	.	-	2	Parent=Os01t0771400-00
Chr01	irgsp1_rep	CDS	32565726	32565824	.	-	0	Parent=Os01t0771400-00
Chr01	irgsp1_rep	CDS	32564746	32564855	.	-	0	Parent=Os01t0771400-00
Chr01	irgsp1_rep	CDS	32563965	32564039	.	-	1	Parent=Os01t0771400-00
Chr01	irgsp1_rep	CDS	32562854	32562932	.	-	1	Parent=Os01t0771400-00
Chr01	irgsp1_rep	CDS	32562623	32562769	.	-	0	Parent=Os01t0771400-00
Chr01	irgsp1_rep	CDS	32562471	32562551	.	-	0	Parent=Os01t0771400-00
Chr01	irgsp1_rep	CDS	32562269	32562388	.	-	0	Parent=Os01t0771400-00
Chr01	irgsp1_rep	CDS	32560999	32561121	.	-	0	Parent=Os01t0771400-00
Chr01	irgsp1_rep	CDS	32559140	32559217	.	-	0	Parent=Os01t0771400-00
Chr01	irgsp1_rep	CDS	32558918	32559006	.	-	0	Parent=Os01t0771400-00
Chr01	irgsp1_rep	CDS	32558702	32558810	.	-	1	Parent=Os01t0771400-00
Chr01	irgsp1_rep	CDS	32558539	32558607	.	-	0	Parent=Os01t0771400-00
Chr01	irgsp1_rep	CDS	32558320	32558430	.	-	0	Parent=Os01t0771400-00
Chr01	irgsp1_rep	CDS	32556613	32556668	.	-	0	Parent=Os01t0771400-00
Chr01	irgsp1_rep	CDS	32556330	32556507	.	-	1	Parent=Os01t0771400-00
Chr01	irgsp1_rep	CDS	32556145	32556246	.	-	0	Parent=Os01t0771400-00
Chr01	irgsp1_rep	CDS	32555834	32556067	.	-	0	Parent=Os01t0771400-00
Chr01	irgsp1_rep	three_prime_UTR	32555761	32555833	.	-	.	Parent=Os01t0771400-00
Chr01	irgsp1_rep	three_prime_UTR	32553876	32553973	.	-	.	Parent=Os01t0771400-00
Chr01	irgsp1_rep	three_prime_UTR	32553623	32553703	.	-	.	Parent=Os01t0771400-00
Chr01	irgsp1_rep	three_prime_UTR	32553462	32553545	.	-	.	Parent=Os01t0771400-00
Chr01	irgsp1_rep	three_prime_UTR	32553344	32553386	.	-	.	Parent=Os01t0771400-00
Chr01	irgsp1_rep	mRNA	32580716	32586143	.	-	.	ID=Os01t0771900-01;Name=Os01t0771900-01;Locus_id=Os01g0771900;Note=Similar to Exo-beta-glucanase.;Transcript_evidence=AK066300 (DDBJ%2C Best hit);ORF_evidence=Q75Z80 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 3%2C N-terminal (IPR001764),Glycoside hydrolase%2C family 3%2C C-terminal (IPR002772),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J013060A09;Expression=AK066300;TENOR=Os01t0771900-01;KEGG=Os01t0771900-01
Chr01	irgsp1_rep	five_prime_UTR	32585951	32586143	.	-	.	Parent=Os01t0771900-01
Chr01	irgsp1_rep	five_prime_UTR	32585053	32585143	.	-	.	Parent=Os01t0771900-01
Chr01	irgsp1_rep	five_prime_UTR	32584893	32584940	.	-	.	Parent=Os01t0771900-01
Chr01	irgsp1_rep	CDS	32584673	32584892	.	-	0	Parent=Os01t0771900-01
Chr01	irgsp1_rep	CDS	32584235	32584440	.	-	2	Parent=Os01t0771900-01
Chr01	irgsp1_rep	CDS	32584063	32584152	.	-	0	Parent=Os01t0771900-01
Chr01	irgsp1_rep	CDS	32583767	32583912	.	-	0	Parent=Os01t0771900-01
Chr01	irgsp1_rep	CDS	32583259	32583502	.	-	1	Parent=Os01t0771900-01
Chr01	irgsp1_rep	CDS	32583074	32583178	.	-	0	Parent=Os01t0771900-01
Chr01	irgsp1_rep	CDS	32582657	32582839	.	-	0	Parent=Os01t0771900-01
Chr01	irgsp1_rep	CDS	32581935	32582136	.	-	0	Parent=Os01t0771900-01
Chr01	irgsp1_rep	CDS	32581296	32581779	.	-	2	Parent=Os01t0771900-01
Chr01	irgsp1_rep	CDS	32581061	32581172	.	-	1	Parent=Os01t0771900-01
Chr01	irgsp1_rep	three_prime_UTR	32580716	32581060	.	-	.	Parent=Os01t0771900-01
Chr01	irgsp1_rep	mRNA	32581323	32584446	.	+	.	ID=Os01t0771950-00;Name=Os01t0771950-00;Locus_id=Os01g0771950;Note=Non-protein coding transcript.;Transcript_evidence=tplb0060e05 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os01t0771950-00
Chr01	irgsp1_rep	exon	32581323	32581775	.	+	.	Parent=Os01t0771950-00
Chr01	irgsp1_rep	exon	32581941	32582147	.	+	.	Parent=Os01t0771950-00
Chr01	irgsp1_rep	exon	32582669	32582860	.	+	.	Parent=Os01t0771950-00
Chr01	irgsp1_rep	exon	32583100	32583200	.	+	.	Parent=Os01t0771950-00
Chr01	irgsp1_rep	exon	32583283	32583504	.	+	.	Parent=Os01t0771950-00
Chr01	irgsp1_rep	exon	32583774	32583896	.	+	.	Parent=Os01t0771950-00
Chr01	irgsp1_rep	exon	32584048	32584143	.	+	.	Parent=Os01t0771950-00
Chr01	irgsp1_rep	exon	32584227	32584446	.	+	.	Parent=Os01t0771950-00
Chr01	irgsp1_rep	mRNA	32586928	32591875	.	-	.	ID=Os01t0772000-01;Name=Os01t0772000-01;Locus_id=Os01g0772000;CGSNL Gene Symbol=DRB4;CGSNL Gene Name=DSRNA-BINDING PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OsDRB4;Oryzabase Gene Name Synonym(s)=dsRNA-binding protein 4;Note=Similar to Double-stranded RNA-binding protein 1.;Transcript_evidence=AK069455 (DDBJ%2C Best hit);ORF_evidence=Q5N8Z0 (UniProt);GO=Biological Process: rRNA catabolic process (GO:0016075),Cellular Component: intracellular (GO:0005622),Molecular Function: RNA binding (GO:0003723),Molecular Function: double-stranded RNA binding (GO:0003725),Molecular Function: ribonuclease III activity (GO:0004525);InterPro=Double-stranded RNA-binding (IPR001159),Ribonuclease III%2C bacterial (IPR011907),Double-stranded RNA-binding-like (IPR014720);NIAS_FLcDNA=J023019D24;Oryzabase=22067;TENOR=Os01t0772000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	32591792	32591875	.	-	.	Parent=Os01t0772000-01
Chr01	irgsp1_rep	CDS	32591548	32591791	.	-	0	Parent=Os01t0772000-01
Chr01	irgsp1_rep	CDS	32589402	32589649	.	-	2	Parent=Os01t0772000-01
Chr01	irgsp1_rep	CDS	32588813	32589032	.	-	0	Parent=Os01t0772000-01
Chr01	irgsp1_rep	CDS	32588362	32588514	.	-	2	Parent=Os01t0772000-01
Chr01	irgsp1_rep	CDS	32587334	32587794	.	-	2	Parent=Os01t0772000-01
Chr01	irgsp1_rep	three_prime_UTR	32587333	32587333	.	-	.	Parent=Os01t0772000-01
Chr01	irgsp1_rep	three_prime_UTR	32586928	32587241	.	-	.	Parent=Os01t0772000-01
Chr01	irgsp1_rep	mRNA	32592931	32593952	.	-	.	ID=Os01t0772100-01;Name=Os01t0772100-01;Locus_id=Os01g0772100;Note=Lateral organ boundaries%2C LOB domain containing protein.;Transcript_evidence=AK242468 (DDBJ%2C Best hit);ORF_evidence=A2ZY99 (UniProt);InterPro=Lateral organ boundaries%2C LOB (IPR004883);NIAS_FLcDNA=J080302F02;TENOR=Os01t0772100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	32593915	32593952	.	-	.	Parent=Os01t0772100-01
Chr01	irgsp1_rep	CDS	32593498	32593914	.	-	0	Parent=Os01t0772100-01
Chr01	irgsp1_rep	CDS	32592996	32593316	.	-	0	Parent=Os01t0772100-01
Chr01	irgsp1_rep	three_prime_UTR	32592931	32592995	.	-	.	Parent=Os01t0772100-01
Chr01	irgsp1_rep	mRNA	32594937	32597265	.	-	.	ID=Os01t0772150-00;Name=Os01t0772150-00;Locus_id=Os01g0772150;Oryzabase Gene Symbol Synonym(s)=OsSET3%2C SDG729;Oryzabase Gene Name Synonym(s)=SET protein 3;Note=Similar to histone-lysine N-methyltransferase SUVR3.;Transcript_evidence=AK355371 (DDBJ);ORF_evidence=NP_001151282.1 (RefSeq);GO=Biological Process: histone lysine methylation (GO:0034968),Cellular Component: nucleus (GO:0005634),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: histone-lysine N-methyltransferase activity (GO:0018024);InterPro=SET domain (IPR001214),Post-SET domain (IPR003616),Pre-SET domain (IPR007728);Oryzabase=13372;TENOR=Os01t0772150-00;KEGG=Os01t0772150-00 (EC:2.1.1.43)
Chr01	irgsp1_rep	CDS	32596638	32597265	.	-	0	Parent=Os01t0772150-00
Chr01	irgsp1_rep	CDS	32594937	32595325	.	-	2	Parent=Os01t0772150-00
Chr01	irgsp1_rep	mRNA	32598084	32601804	.	-	.	ID=Os01t0772200-01;Name=Os01t0772200-01;Locus_id=Os01g0772200;Oryzabase Gene Symbol Synonym(s)=OsTFIIF2-2%2C OsRAP30-2;Oryzabase Gene Name Synonym(s)=OsTFIIF2-2 of Pol II%2C OsTFIIF2-2 of RNA polymerase II;Note=Transcription initiation factor IIF%2C beta subunit family protein.;Transcript_evidence=AK060471 (DDBJ%2C Best hit);ORF_evidence=B6TIE2 (UniProt);GO=Biological Process: transcription initiation from RNA polymerase II promoter (GO:0006367),Cellular Component: transcription factor TFIIF complex (GO:0005674),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524);InterPro=Transcription initiation factor IIF%2C beta subunit (IPR003196),Transcription Factor IIF%2C Rap30/Rap74%2C interaction (IPR011039);NIAS_FLcDNA=001-012-E06;Oryzabase=18688;Expression=AK060471;TENOR=Os01t0772200-01;KEGG=Os01t0772200-01
Chr01	irgsp1_rep	five_prime_UTR	32601679	32601804	.	-	.	Parent=Os01t0772200-01
Chr01	irgsp1_rep	CDS	32601439	32601678	.	-	0	Parent=Os01t0772200-01
Chr01	irgsp1_rep	CDS	32600530	32600638	.	-	0	Parent=Os01t0772200-01
Chr01	irgsp1_rep	CDS	32599281	32599339	.	-	2	Parent=Os01t0772200-01
Chr01	irgsp1_rep	CDS	32599211	32599219	.	-	0	Parent=Os01t0772200-01
Chr01	irgsp1_rep	three_prime_UTR	32599035	32599210	.	-	.	Parent=Os01t0772200-01
Chr01	irgsp1_rep	three_prime_UTR	32598665	32598817	.	-	.	Parent=Os01t0772200-01
Chr01	irgsp1_rep	three_prime_UTR	32598084	32598536	.	-	.	Parent=Os01t0772200-01
Chr01	irgsp1_rep	mRNA	32598097	32601804	.	-	.	ID=Os01t0772200-02;Name=Os01t0772200-02;Locus_id=Os01g0772200;Oryzabase Gene Symbol Synonym(s)=OsTFIIF2-2%2C OsRAP30-2;Oryzabase Gene Name Synonym(s)=OsTFIIF2-2 of Pol II%2C OsTFIIF2-2 of RNA polymerase II;Note=Transcription initiation factor IIF%2C beta subunit domain containing protein.;Transcript_evidence=AK103491 (DDBJ%2C Best hit);ORF_evidence=B6TIE2 (UniProt);GO=Biological Process: transcription from RNA polymerase II promoter (GO:0006366),Biological Process: transcription initiation from RNA polymerase II promoter (GO:0006367),Cellular Component: nucleus (GO:0005634),Cellular Component: transcription factor TFIIF complex (GO:0005674),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=Transcription initiation factor IIF%2C beta subunit (IPR003196),Transcription Factor IIF%2C Rap30/Rap74%2C interaction (IPR011039),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Transcription initiation factor IIF%2C beta subunit%2C subgroup (IPR016640);NIAS_FLcDNA=J033130N17;Oryzabase=18688;Expression=AK103491;TENOR=Os01t0772200-02;KEGG=Os01t0772200-02
Chr01	irgsp1_rep	five_prime_UTR	32601679	32601804	.	-	.	Parent=Os01t0772200-02
Chr01	irgsp1_rep	CDS	32601439	32601678	.	-	0	Parent=Os01t0772200-02
Chr01	irgsp1_rep	CDS	32600530	32600638	.	-	0	Parent=Os01t0772200-02
Chr01	irgsp1_rep	CDS	32599209	32599339	.	-	2	Parent=Os01t0772200-02
Chr01	irgsp1_rep	CDS	32599035	32599109	.	-	0	Parent=Os01t0772200-02
Chr01	irgsp1_rep	CDS	32598665	32598817	.	-	0	Parent=Os01t0772200-02
Chr01	irgsp1_rep	CDS	32598411	32598536	.	-	0	Parent=Os01t0772200-02
Chr01	irgsp1_rep	three_prime_UTR	32598097	32598410	.	-	.	Parent=Os01t0772200-02
Chr01	irgsp1_rep	mRNA	32608386	32611306	.	+	.	ID=Os01t0772400-00;Name=Os01t0772400-00;Locus_id=Os01g0772400;Oryzabase Gene Symbol Synonym(s)=OsSTA34;Note=Streptomyces cyclase/dehydrase family protein.;Transcript_evidence=AK376758 (DDBJ);ORF_evidence=NP_001149964.1 (RefSeq);InterPro=Streptomyces cyclase/dehydrase (IPR005031),START-like domain (IPR023393);Oryzabase=19341;TENOR=Os01t0772400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	32608386	32608680	.	+	.	Parent=Os01t0772400-00
Chr01	irgsp1_rep	CDS	32608681	32609003	.	+	0	Parent=Os01t0772400-00
Chr01	irgsp1_rep	CDS	32609110	32609305	.	+	1	Parent=Os01t0772400-00
Chr01	irgsp1_rep	CDS	32610704	32610835	.	+	0	Parent=Os01t0772400-00
Chr01	irgsp1_rep	CDS	32610923	32611045	.	+	0	Parent=Os01t0772400-00
Chr01	irgsp1_rep	three_prime_UTR	32611046	32611306	.	+	.	Parent=Os01t0772400-00
Chr01	irgsp1_rep	mRNA	32611416	32613138	.	-	.	ID=Os01t0772500-01;Name=Os01t0772500-01;Locus_id=Os01g0772500;Note=Glycosyl transferase%2C family 14 protein.;Transcript_evidence=AK109736 (DDBJ%2C Best hit);ORF_evidence=A2WVJ3 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: acetylglucosaminyltransferase activity (GO:0008375);InterPro=Glycosyl transferase%2C family 14 (IPR003406);NIAS_FLcDNA=002-146-C09;Expression=AK109736;TENOR=Os01t0772500-01;KEGG=Os01t0772500-01
Chr01	irgsp1_rep	five_prime_UTR	32613098	32613138	.	-	.	Parent=Os01t0772500-01
Chr01	irgsp1_rep	CDS	32612563	32613097	.	-	0	Parent=Os01t0772500-01
Chr01	irgsp1_rep	CDS	32612288	32612464	.	-	2	Parent=Os01t0772500-01
Chr01	irgsp1_rep	CDS	32611710	32612212	.	-	2	Parent=Os01t0772500-01
Chr01	irgsp1_rep	three_prime_UTR	32611416	32611709	.	-	.	Parent=Os01t0772500-01
Chr01	irgsp1_rep	mRNA	32615694	32622700	.	+	.	ID=Os01t0772600-01;Name=Os01t0772600-01;Locus_id=Os01g0772600;Oryzabase Gene Symbol Synonym(s)=CK1_CaseinKinase_1a.3;Note=Similar to Casein kinase-like protein.;Transcript_evidence=AK069612 (DDBJ%2C Best hit);ORF_evidence=NP_187044.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023019A22;Oryzabase=21684;Expression=AK069612;TENOR=Os01t0772600-01;KEGG=Os01t0772600-01
Chr01	irgsp1_rep	five_prime_UTR	32615694	32615852	.	+	.	Parent=Os01t0772600-01
Chr01	irgsp1_rep	five_prime_UTR	32616452	32616533	.	+	.	Parent=Os01t0772600-01
Chr01	irgsp1_rep	CDS	32616534	32616920	.	+	0	Parent=Os01t0772600-01
Chr01	irgsp1_rep	CDS	32618004	32618129	.	+	0	Parent=Os01t0772600-01
Chr01	irgsp1_rep	CDS	32618219	32618292	.	+	0	Parent=Os01t0772600-01
Chr01	irgsp1_rep	CDS	32618686	32618755	.	+	1	Parent=Os01t0772600-01
Chr01	irgsp1_rep	CDS	32618830	32618885	.	+	0	Parent=Os01t0772600-01
Chr01	irgsp1_rep	CDS	32618978	32619049	.	+	1	Parent=Os01t0772600-01
Chr01	irgsp1_rep	CDS	32619126	32619220	.	+	1	Parent=Os01t0772600-01
Chr01	irgsp1_rep	CDS	32619402	32619468	.	+	2	Parent=Os01t0772600-01
Chr01	irgsp1_rep	CDS	32619551	32619680	.	+	1	Parent=Os01t0772600-01
Chr01	irgsp1_rep	CDS	32619877	32620092	.	+	0	Parent=Os01t0772600-01
Chr01	irgsp1_rep	CDS	32620203	32620333	.	+	0	Parent=Os01t0772600-01
Chr01	irgsp1_rep	CDS	32620786	32620960	.	+	1	Parent=Os01t0772600-01
Chr01	irgsp1_rep	CDS	32621034	32621124	.	+	0	Parent=Os01t0772600-01
Chr01	irgsp1_rep	CDS	32621395	32621552	.	+	2	Parent=Os01t0772600-01
Chr01	irgsp1_rep	CDS	32621801	32621989	.	+	0	Parent=Os01t0772600-01
Chr01	irgsp1_rep	CDS	32622130	32622189	.	+	0	Parent=Os01t0772600-01
Chr01	irgsp1_rep	three_prime_UTR	32622190	32622700	.	+	.	Parent=Os01t0772600-01
Chr01	irgsp1_rep	mRNA	32615720	32622711	.	+	.	ID=Os01t0772600-02;Name=Os01t0772600-02;Locus_id=Os01g0772600;Oryzabase Gene Symbol Synonym(s)=CK1_CaseinKinase_1a.3;Note=Similar to Casein kinase-like protein.;Transcript_evidence=AK120893 (DDBJ%2C Best hit);ORF_evidence=NP_187044.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023029O03;Oryzabase=21684;Expression=AK120893;TENOR=Os01t0772600-02;KEGG=Os01t0772600-02
Chr01	irgsp1_rep	five_prime_UTR	32615720	32615852	.	+	.	Parent=Os01t0772600-02
Chr01	irgsp1_rep	five_prime_UTR	32616499	32616533	.	+	.	Parent=Os01t0772600-02
Chr01	irgsp1_rep	CDS	32616534	32616920	.	+	0	Parent=Os01t0772600-02
Chr01	irgsp1_rep	CDS	32618004	32618129	.	+	0	Parent=Os01t0772600-02
Chr01	irgsp1_rep	CDS	32618219	32618292	.	+	0	Parent=Os01t0772600-02
Chr01	irgsp1_rep	CDS	32618686	32618755	.	+	1	Parent=Os01t0772600-02
Chr01	irgsp1_rep	CDS	32618830	32618885	.	+	0	Parent=Os01t0772600-02
Chr01	irgsp1_rep	CDS	32618978	32619049	.	+	1	Parent=Os01t0772600-02
Chr01	irgsp1_rep	CDS	32619126	32619220	.	+	1	Parent=Os01t0772600-02
Chr01	irgsp1_rep	CDS	32619402	32619468	.	+	2	Parent=Os01t0772600-02
Chr01	irgsp1_rep	CDS	32619551	32619680	.	+	1	Parent=Os01t0772600-02
Chr01	irgsp1_rep	CDS	32619877	32620092	.	+	0	Parent=Os01t0772600-02
Chr01	irgsp1_rep	CDS	32620203	32620333	.	+	0	Parent=Os01t0772600-02
Chr01	irgsp1_rep	CDS	32620786	32620960	.	+	1	Parent=Os01t0772600-02
Chr01	irgsp1_rep	CDS	32621034	32621124	.	+	0	Parent=Os01t0772600-02
Chr01	irgsp1_rep	CDS	32621395	32621552	.	+	2	Parent=Os01t0772600-02
Chr01	irgsp1_rep	CDS	32621801	32621989	.	+	0	Parent=Os01t0772600-02
Chr01	irgsp1_rep	CDS	32622130	32622189	.	+	0	Parent=Os01t0772600-02
Chr01	irgsp1_rep	three_prime_UTR	32622190	32622711	.	+	.	Parent=Os01t0772600-02
Chr01	irgsp1_rep	mRNA	32620069	32622721	.	+	.	ID=Os01t0772600-03;Name=Os01t0772600-03;Locus_id=Os01g0772600;Oryzabase Gene Symbol Synonym(s)=CK1_CaseinKinase_1a.3;Note=Similar to ATP binding protein.;Transcript_evidence=AK104917 (DDBJ%2C Best hit);ORF_evidence=B6U8U2 (UniProt);NIAS_FLcDNA=001-047-F04;Oryzabase=21684;Expression=AK104917;TENOR=Os01t0772600-03;KEGG=Os01t0772600-03
Chr01	irgsp1_rep	CDS	32620069	32620092	.	+	0	Parent=Os01t0772600-03
Chr01	irgsp1_rep	CDS	32620203	32620333	.	+	0	Parent=Os01t0772600-03
Chr01	irgsp1_rep	CDS	32620786	32620960	.	+	1	Parent=Os01t0772600-03
Chr01	irgsp1_rep	CDS	32621034	32621124	.	+	0	Parent=Os01t0772600-03
Chr01	irgsp1_rep	CDS	32621395	32621552	.	+	2	Parent=Os01t0772600-03
Chr01	irgsp1_rep	CDS	32621801	32621989	.	+	0	Parent=Os01t0772600-03
Chr01	irgsp1_rep	CDS	32622130	32622189	.	+	0	Parent=Os01t0772600-03
Chr01	irgsp1_rep	three_prime_UTR	32622190	32622721	.	+	.	Parent=Os01t0772600-03
Chr01	irgsp1_rep	mRNA	32618217	32621125	.	-	.	ID=Os01t0772650-00;Name=Os01t0772650-00;Locus_id=Os01g0772650;Note=Non-protein coding transcript.;Transcript_evidence=BT084747 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0772650-00
Chr01	irgsp1_rep	exon	32621028	32621125	.	-	.	Parent=Os01t0772650-00
Chr01	irgsp1_rep	exon	32620796	32620951	.	-	.	Parent=Os01t0772650-00
Chr01	irgsp1_rep	exon	32620181	32620341	.	-	.	Parent=Os01t0772650-00
Chr01	irgsp1_rep	exon	32619886	32620084	.	-	.	Parent=Os01t0772650-00
Chr01	irgsp1_rep	exon	32619557	32619689	.	-	.	Parent=Os01t0772650-00
Chr01	irgsp1_rep	exon	32619394	32619480	.	-	.	Parent=Os01t0772650-00
Chr01	irgsp1_rep	exon	32619116	32619215	.	-	.	Parent=Os01t0772650-00
Chr01	irgsp1_rep	exon	32618963	32619035	.	-	.	Parent=Os01t0772650-00
Chr01	irgsp1_rep	exon	32618803	32618872	.	-	.	Parent=Os01t0772650-00
Chr01	irgsp1_rep	exon	32618217	32618339	.	-	.	Parent=Os01t0772650-00
Chr01	irgsp1_rep	mRNA	32625958	32646696	.	+	.	ID=Os01t0772700-00;Name=Os01t0772700-00;Locus_id=Os01g0772700;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001044394.2 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-type fold (IPR016024);TENOR=Os01t0772700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	32625958	32626122	.	+	0	Parent=Os01t0772700-00
Chr01	irgsp1_rep	CDS	32626429	32626518	.	+	0	Parent=Os01t0772700-00
Chr01	irgsp1_rep	CDS	32626600	32626683	.	+	0	Parent=Os01t0772700-00
Chr01	irgsp1_rep	CDS	32627131	32627204	.	+	0	Parent=Os01t0772700-00
Chr01	irgsp1_rep	CDS	32627891	32628002	.	+	1	Parent=Os01t0772700-00
Chr01	irgsp1_rep	CDS	32628707	32628763	.	+	0	Parent=Os01t0772700-00
Chr01	irgsp1_rep	CDS	32629438	32629508	.	+	0	Parent=Os01t0772700-00
Chr01	irgsp1_rep	CDS	32631987	32632056	.	+	1	Parent=Os01t0772700-00
Chr01	irgsp1_rep	CDS	32633282	32633345	.	+	0	Parent=Os01t0772700-00
Chr01	irgsp1_rep	CDS	32634081	32634229	.	+	2	Parent=Os01t0772700-00
Chr01	irgsp1_rep	CDS	32634502	32634573	.	+	0	Parent=Os01t0772700-00
Chr01	irgsp1_rep	CDS	32634753	32634850	.	+	0	Parent=Os01t0772700-00
Chr01	irgsp1_rep	CDS	32635505	32635589	.	+	1	Parent=Os01t0772700-00
Chr01	irgsp1_rep	CDS	32635808	32635867	.	+	0	Parent=Os01t0772700-00
Chr01	irgsp1_rep	CDS	32636150	32636236	.	+	0	Parent=Os01t0772700-00
Chr01	irgsp1_rep	CDS	32637049	32637102	.	+	0	Parent=Os01t0772700-00
Chr01	irgsp1_rep	CDS	32637393	32637521	.	+	0	Parent=Os01t0772700-00
Chr01	irgsp1_rep	CDS	32638982	32639040	.	+	0	Parent=Os01t0772700-00
Chr01	irgsp1_rep	CDS	32639853	32640001	.	+	1	Parent=Os01t0772700-00
Chr01	irgsp1_rep	CDS	32640080	32640234	.	+	2	Parent=Os01t0772700-00
Chr01	irgsp1_rep	CDS	32640461	32640589	.	+	0	Parent=Os01t0772700-00
Chr01	irgsp1_rep	CDS	32640674	32640759	.	+	0	Parent=Os01t0772700-00
Chr01	irgsp1_rep	CDS	32640962	32641077	.	+	1	Parent=Os01t0772700-00
Chr01	irgsp1_rep	CDS	32641171	32641283	.	+	2	Parent=Os01t0772700-00
Chr01	irgsp1_rep	CDS	32642077	32642200	.	+	0	Parent=Os01t0772700-00
Chr01	irgsp1_rep	CDS	32642282	32642400	.	+	2	Parent=Os01t0772700-00
Chr01	irgsp1_rep	CDS	32643031	32643232	.	+	0	Parent=Os01t0772700-00
Chr01	irgsp1_rep	CDS	32643328	32643499	.	+	2	Parent=Os01t0772700-00
Chr01	irgsp1_rep	CDS	32644594	32644918	.	+	1	Parent=Os01t0772700-00
Chr01	irgsp1_rep	CDS	32645680	32645728	.	+	0	Parent=Os01t0772700-00
Chr01	irgsp1_rep	CDS	32645911	32646112	.	+	2	Parent=Os01t0772700-00
Chr01	irgsp1_rep	CDS	32646615	32646696	.	+	1	Parent=Os01t0772700-00
Chr01	irgsp1_rep	mRNA	32652482	32656533	.	+	.	ID=Os01t0772800-01;Name=Os01t0772800-01;Locus_id=Os01g0772800;Note=Similar to Signal recognition particle 54 kDa protein 2 (SRP54).;Transcript_evidence=AK120871 (DDBJ%2C Best hit);ORF_evidence=P49972 (UniProt);GO=Biological Process: SRP-dependent cotranslational protein targeting to membrane (GO:0006614),Cellular Component: signal recognition particle (GO:0048500),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: GTP binding (GO:0005525),Molecular Function: 7S RNA binding (GO:0008312),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=Signal recognition particle%2C SRP54 subunit%2C GTPase (IPR000897),ATPase%2C AAA+ type%2C core (IPR003593),Signal recognition particle%2C SRP54 subunit%2C M-domain (IPR004125),Signal recognition particle%2C SRP54 subunit (IPR006325),Signal recognition particle%2C SRP54 subunit%2C helical bundle (IPR013822);NIAS_FLcDNA=J023026D19;Expression=AK120871;TENOR=Os01t0772800-01;KEGG=Os01t0772800-01
Chr01	irgsp1_rep	five_prime_UTR	32652482	32652780	.	+	.	Parent=Os01t0772800-01
Chr01	irgsp1_rep	CDS	32652781	32653011	.	+	0	Parent=Os01t0772800-01
Chr01	irgsp1_rep	CDS	32653093	32653192	.	+	0	Parent=Os01t0772800-01
Chr01	irgsp1_rep	CDS	32654198	32654351	.	+	2	Parent=Os01t0772800-01
Chr01	irgsp1_rep	CDS	32654431	32654581	.	+	1	Parent=Os01t0772800-01
Chr01	irgsp1_rep	CDS	32654667	32654815	.	+	0	Parent=Os01t0772800-01
Chr01	irgsp1_rep	CDS	32655299	32655399	.	+	1	Parent=Os01t0772800-01
Chr01	irgsp1_rep	CDS	32655472	32655629	.	+	2	Parent=Os01t0772800-01
Chr01	irgsp1_rep	CDS	32655770	32655884	.	+	0	Parent=Os01t0772800-01
Chr01	irgsp1_rep	CDS	32655954	32656285	.	+	2	Parent=Os01t0772800-01
Chr01	irgsp1_rep	three_prime_UTR	32656286	32656533	.	+	.	Parent=Os01t0772800-01
Chr01	irgsp1_rep	mRNA	32656756	32658481	.	-	.	ID=Os01t0772900-01;Name=Os01t0772900-01;Locus_id=Os01g0772900;CGSNL Gene Symbol=HMT2;CGSNL Gene Name=HOMOCYSTEINE METHYLTRANSFERASE 2;Oryzabase Gene Symbol Synonym(s)=OsaHMT2%2C OsHMT2;Oryzabase Gene Name Synonym(s)=homocysteine methyltransferase 2;Note=Similar to Homocysteine S-methyltransferase 4 (EC 2.1.1.10) (S- methylmethionine:homocysteine methyltransferase 4) (SMM:Hcy S- methyltransferase 4) (ZmHMT-4).;Transcript_evidence=AK073362 (DDBJ%2C Best hit);ORF_evidence=NP_001105014.1 (RefSeq);GO=Molecular Function: homocysteine S-methyltransferase activity (GO:0008898);InterPro=Homocysteine S-methyltransferase (IPR003726);NIAS_FLcDNA=J033030E05;Oryzabase=22911;TENOR=Os01t0772900-01
Chr01	irgsp1_rep	five_prime_UTR	32658258	32658481	.	-	.	Parent=Os01t0772900-01
Chr01	irgsp1_rep	CDS	32658075	32658257	.	-	0	Parent=Os01t0772900-01
Chr01	irgsp1_rep	CDS	32657929	32657985	.	-	0	Parent=Os01t0772900-01
Chr01	irgsp1_rep	CDS	32657614	32657834	.	-	0	Parent=Os01t0772900-01
Chr01	irgsp1_rep	CDS	32657206	32657530	.	-	1	Parent=Os01t0772900-01
Chr01	irgsp1_rep	CDS	32656892	32657092	.	-	0	Parent=Os01t0772900-01
Chr01	irgsp1_rep	three_prime_UTR	32656756	32656891	.	-	.	Parent=Os01t0772900-01
Chr01	irgsp1_rep	mRNA	32656768	32658390	.	-	.	ID=Os01t0772900-02;Name=Os01t0772900-02;Locus_id=Os01g0772900;CGSNL Gene Symbol=HMT2;CGSNL Gene Name=HOMOCYSTEINE METHYLTRANSFERASE 2;Oryzabase Gene Symbol Synonym(s)=OsaHMT2%2C OsHMT2;Oryzabase Gene Name Synonym(s)=homocysteine methyltransferase 2;Note=Similar to Homocysteine S-methyltransferase 4 (EC 2.1.1.10) (S- methylmethionine:homocysteine methyltransferase 4) (SMM:Hcy S- methyltransferase 4) (ZmHMT-4).;Transcript_evidence=AK104962 (DDBJ%2C Best hit);ORF_evidence=NP_001105014.1 (RefSeq);GO=Molecular Function: homocysteine S-methyltransferase activity (GO:0008898);InterPro=Homocysteine S-methyltransferase (IPR003726);NIAS_FLcDNA=001-116-A06;Oryzabase=22911;TENOR=Os01t0772900-02
Chr01	irgsp1_rep	five_prime_UTR	32658258	32658390	.	-	.	Parent=Os01t0772900-02
Chr01	irgsp1_rep	CDS	32658075	32658257	.	-	0	Parent=Os01t0772900-02
Chr01	irgsp1_rep	CDS	32657929	32657985	.	-	0	Parent=Os01t0772900-02
Chr01	irgsp1_rep	CDS	32657614	32657834	.	-	0	Parent=Os01t0772900-02
Chr01	irgsp1_rep	CDS	32657206	32657530	.	-	1	Parent=Os01t0772900-02
Chr01	irgsp1_rep	CDS	32656892	32657092	.	-	0	Parent=Os01t0772900-02
Chr01	irgsp1_rep	three_prime_UTR	32656768	32656891	.	-	.	Parent=Os01t0772900-02
Chr01	irgsp1_rep	mRNA	32664335	32667425	.	-	.	ID=Os01t0773000-01;Name=Os01t0773000-01;Locus_id=Os01g0773000;Note=Similar to RNA binding / pseudouridylate synthase/ tRNA-pseudouridine synthase.;Transcript_evidence=AK242635 (DDBJ%2C Best hit);ORF_evidence=XP_002884472.1 (RefSeq);GO=Biological Process: pseudouridine synthesis (GO:0001522),Biological Process: RNA modification (GO:0009451),Molecular Function: RNA binding (GO:0003723),Molecular Function: pseudouridine synthase activity (GO:0009982);InterPro=Pseudouridine synthase%2C TruD (IPR001656),Pseudouridine synthase%2C catalytic domain (IPR020103),Pseudouridine synthase TruD%2C conserved site (IPR020119);NIAS_FLcDNA=J090023E01;TENOR=Os01t0773000-01;KEGG=Os01t0773000-01
Chr01	irgsp1_rep	five_prime_UTR	32667183	32667425	.	-	.	Parent=Os01t0773000-01
Chr01	irgsp1_rep	CDS	32666892	32667182	.	-	0	Parent=Os01t0773000-01
Chr01	irgsp1_rep	CDS	32666588	32666767	.	-	0	Parent=Os01t0773000-01
Chr01	irgsp1_rep	CDS	32666266	32666504	.	-	0	Parent=Os01t0773000-01
Chr01	irgsp1_rep	CDS	32666074	32666146	.	-	1	Parent=Os01t0773000-01
Chr01	irgsp1_rep	CDS	32665910	32665966	.	-	0	Parent=Os01t0773000-01
Chr01	irgsp1_rep	CDS	32665542	32665621	.	-	0	Parent=Os01t0773000-01
Chr01	irgsp1_rep	CDS	32665389	32665451	.	-	1	Parent=Os01t0773000-01
Chr01	irgsp1_rep	CDS	32664891	32664987	.	-	1	Parent=Os01t0773000-01
Chr01	irgsp1_rep	three_prime_UTR	32664335	32664890	.	-	.	Parent=Os01t0773000-01
Chr01	irgsp1_rep	mRNA	32669542	32676082	.	+	.	ID=Os01t0773100-01;Name=Os01t0773100-01;Locus_id=Os01g0773100;Note=Similar to F20D22.3 protein.;Transcript_evidence=AK100668 (DDBJ%2C Best hit);ORF_evidence=O64487 (UniProt);InterPro=Dymeclin (IPR019142);NIAS_FLcDNA=J023112H13;Expression=AK100668;TENOR=Os01t0773100-01;KEGG=Os01t0773100-01
Chr01	irgsp1_rep	five_prime_UTR	32669542	32669719	.	+	.	Parent=Os01t0773100-01
Chr01	irgsp1_rep	CDS	32669720	32669921	.	+	0	Parent=Os01t0773100-01
Chr01	irgsp1_rep	CDS	32670460	32670693	.	+	2	Parent=Os01t0773100-01
Chr01	irgsp1_rep	CDS	32670822	32670885	.	+	2	Parent=Os01t0773100-01
Chr01	irgsp1_rep	CDS	32670992	32671121	.	+	1	Parent=Os01t0773100-01
Chr01	irgsp1_rep	CDS	32671225	32671366	.	+	0	Parent=Os01t0773100-01
Chr01	irgsp1_rep	CDS	32671548	32671805	.	+	2	Parent=Os01t0773100-01
Chr01	irgsp1_rep	CDS	32671910	32671994	.	+	2	Parent=Os01t0773100-01
Chr01	irgsp1_rep	CDS	32672351	32672453	.	+	1	Parent=Os01t0773100-01
Chr01	irgsp1_rep	CDS	32673023	32673148	.	+	0	Parent=Os01t0773100-01
Chr01	irgsp1_rep	CDS	32673218	32673331	.	+	0	Parent=Os01t0773100-01
Chr01	irgsp1_rep	CDS	32673511	32673629	.	+	0	Parent=Os01t0773100-01
Chr01	irgsp1_rep	CDS	32673735	32673822	.	+	1	Parent=Os01t0773100-01
Chr01	irgsp1_rep	CDS	32673896	32673988	.	+	0	Parent=Os01t0773100-01
Chr01	irgsp1_rep	CDS	32674067	32674156	.	+	0	Parent=Os01t0773100-01
Chr01	irgsp1_rep	CDS	32674264	32674383	.	+	0	Parent=Os01t0773100-01
Chr01	irgsp1_rep	CDS	32674524	32674615	.	+	0	Parent=Os01t0773100-01
Chr01	irgsp1_rep	CDS	32675051	32675105	.	+	1	Parent=Os01t0773100-01
Chr01	irgsp1_rep	CDS	32675400	32675429	.	+	0	Parent=Os01t0773100-01
Chr01	irgsp1_rep	three_prime_UTR	32675430	32676082	.	+	.	Parent=Os01t0773100-01
Chr01	irgsp1_rep	mRNA	32669591	32675758	.	+	.	ID=Os01t0773100-02;Name=Os01t0773100-02;Locus_id=Os01g0773100;Note=Similar to F20D22.3 protein.;Transcript_evidence=AK102008 (DDBJ%2C Best hit);ORF_evidence=O64487 (UniProt);InterPro=Dymeclin (IPR019142);NIAS_FLcDNA=J033079P11;Expression=AK102008;TENOR=Os01t0773100-02;KEGG=Os01t0773100-02
Chr01	irgsp1_rep	five_prime_UTR	32669591	32669719	.	+	.	Parent=Os01t0773100-02
Chr01	irgsp1_rep	CDS	32669720	32669921	.	+	0	Parent=Os01t0773100-02
Chr01	irgsp1_rep	CDS	32670460	32670693	.	+	2	Parent=Os01t0773100-02
Chr01	irgsp1_rep	CDS	32670822	32670885	.	+	2	Parent=Os01t0773100-02
Chr01	irgsp1_rep	CDS	32670992	32671121	.	+	1	Parent=Os01t0773100-02
Chr01	irgsp1_rep	CDS	32671225	32671366	.	+	0	Parent=Os01t0773100-02
Chr01	irgsp1_rep	CDS	32671548	32671805	.	+	2	Parent=Os01t0773100-02
Chr01	irgsp1_rep	CDS	32671910	32671994	.	+	2	Parent=Os01t0773100-02
Chr01	irgsp1_rep	CDS	32672351	32672453	.	+	1	Parent=Os01t0773100-02
Chr01	irgsp1_rep	CDS	32673023	32673148	.	+	0	Parent=Os01t0773100-02
Chr01	irgsp1_rep	CDS	32673218	32673331	.	+	0	Parent=Os01t0773100-02
Chr01	irgsp1_rep	CDS	32673511	32673629	.	+	0	Parent=Os01t0773100-02
Chr01	irgsp1_rep	CDS	32673735	32673822	.	+	1	Parent=Os01t0773100-02
Chr01	irgsp1_rep	CDS	32673896	32673988	.	+	0	Parent=Os01t0773100-02
Chr01	irgsp1_rep	CDS	32674067	32674156	.	+	0	Parent=Os01t0773100-02
Chr01	irgsp1_rep	CDS	32674264	32674383	.	+	0	Parent=Os01t0773100-02
Chr01	irgsp1_rep	CDS	32674524	32674615	.	+	0	Parent=Os01t0773100-02
Chr01	irgsp1_rep	CDS	32675051	32675105	.	+	1	Parent=Os01t0773100-02
Chr01	irgsp1_rep	CDS	32675400	32675429	.	+	0	Parent=Os01t0773100-02
Chr01	irgsp1_rep	three_prime_UTR	32675430	32675758	.	+	.	Parent=Os01t0773100-02
Chr01	irgsp1_rep	mRNA	32677412	32681407	.	-	.	ID=Os01t0773200-01;Name=Os01t0773200-01;Locus_id=Os01g0773200;Oryzabase Gene Symbol Synonym(s)=JMJ713;Oryzabase Gene Name Synonym(s)=Jumonji 713;Note=Hypothetical conserved gene.;Transcript_evidence=AK069524 (DDBJ%2C Best hit);ORF_evidence=B8AA64 (UniProt);NIAS_FLcDNA=J023024G06;Oryzabase=15215;Expression=AK069524;TENOR=Os01t0773200-01;KEGG=Os01t0773200-01
Chr01	irgsp1_rep	five_prime_UTR	32681376	32681407	.	-	.	Parent=Os01t0773200-01
Chr01	irgsp1_rep	CDS	32681235	32681375	.	-	0	Parent=Os01t0773200-01
Chr01	irgsp1_rep	CDS	32680864	32681100	.	-	0	Parent=Os01t0773200-01
Chr01	irgsp1_rep	three_prime_UTR	32680553	32680863	.	-	.	Parent=Os01t0773200-01
Chr01	irgsp1_rep	three_prime_UTR	32680401	32680469	.	-	.	Parent=Os01t0773200-01
Chr01	irgsp1_rep	three_prime_UTR	32679724	32680284	.	-	.	Parent=Os01t0773200-01
Chr01	irgsp1_rep	three_prime_UTR	32679496	32679612	.	-	.	Parent=Os01t0773200-01
Chr01	irgsp1_rep	three_prime_UTR	32678104	32679106	.	-	.	Parent=Os01t0773200-01
Chr01	irgsp1_rep	three_prime_UTR	32677412	32677838	.	-	.	Parent=Os01t0773200-01
Chr01	irgsp1_rep	mRNA	32676081	32681406	.	-	.	ID=Os01t0773200-02;Name=Os01t0773200-02;Locus_id=Os01g0773200;Oryzabase Gene Symbol Synonym(s)=JMJ713;Oryzabase Gene Name Synonym(s)=Jumonji 713;Note=Conserved hypothetical protein.;Transcript_evidence=AK120199 (DDBJ%2C Best hit);ORF_evidence=B8AA64 (UniProt);NIAS_FLcDNA=J013037C01;Oryzabase=15215;TENOR=Os01t0773200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	32681376	32681406	.	-	.	Parent=Os01t0773200-02
Chr01	irgsp1_rep	CDS	32681235	32681375	.	-	0	Parent=Os01t0773200-02
Chr01	irgsp1_rep	CDS	32681023	32681100	.	-	0	Parent=Os01t0773200-02
Chr01	irgsp1_rep	CDS	32680813	32680900	.	-	0	Parent=Os01t0773200-02
Chr01	irgsp1_rep	CDS	32680517	32680719	.	-	2	Parent=Os01t0773200-02
Chr01	irgsp1_rep	three_prime_UTR	32679724	32680516	.	-	.	Parent=Os01t0773200-02
Chr01	irgsp1_rep	three_prime_UTR	32679496	32679612	.	-	.	Parent=Os01t0773200-02
Chr01	irgsp1_rep	three_prime_UTR	32678987	32679106	.	-	.	Parent=Os01t0773200-02
Chr01	irgsp1_rep	three_prime_UTR	32678470	32678493	.	-	.	Parent=Os01t0773200-02
Chr01	irgsp1_rep	three_prime_UTR	32678104	32678182	.	-	.	Parent=Os01t0773200-02
Chr01	irgsp1_rep	three_prime_UTR	32677528	32677838	.	-	.	Parent=Os01t0773200-02
Chr01	irgsp1_rep	three_prime_UTR	32677126	32677241	.	-	.	Parent=Os01t0773200-02
Chr01	irgsp1_rep	three_prime_UTR	32676948	32677041	.	-	.	Parent=Os01t0773200-02
Chr01	irgsp1_rep	three_prime_UTR	32676081	32676588	.	-	.	Parent=Os01t0773200-02
Chr01	irgsp1_rep	mRNA	32683149	32686250	.	-	.	ID=Os01t0773350-01;Name=Os01t0773350-01;Locus_id=Os01g0773350;Note=Non-protein coding transcript.;Transcript_evidence=AK240678 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J043001B05;TENOR=Os01t0773350-01
Chr01	irgsp1_rep	exon	32685436	32686250	.	-	.	Parent=Os01t0773350-01
Chr01	irgsp1_rep	exon	32683149	32685397	.	-	.	Parent=Os01t0773350-01
Chr01	irgsp1_rep	mRNA	32693760	32696873	.	+	.	ID=Os01t0773400-00;Name=Os01t0773400-00;Locus_id=Os01g0773400;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5ZBZ1 (UniProt);TENOR=Os01t0773400-00
Chr01	irgsp1_rep	CDS	32693760	32693802	.	+	0	Parent=Os01t0773400-00
Chr01	irgsp1_rep	CDS	32693884	32693961	.	+	2	Parent=Os01t0773400-00
Chr01	irgsp1_rep	CDS	32694065	32694274	.	+	2	Parent=Os01t0773400-00
Chr01	irgsp1_rep	CDS	32694610	32696399	.	+	2	Parent=Os01t0773400-00
Chr01	irgsp1_rep	CDS	32696823	32696873	.	+	0	Parent=Os01t0773400-00
Chr01	irgsp1_rep	mRNA	32696682	32698285	.	-	.	ID=Os01t0773500-01;Name=Os01t0773500-01;Locus_id=Os01g0773500;Note=Conserved hypothetical protein.;Transcript_evidence=AK062417 (DDBJ%2C Best hit);ORF_evidence=B8AA66 (UniProt);NIAS_FLcDNA=001-102-F08;TENOR=Os01t0773500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	32698168	32698285	.	-	.	Parent=Os01t0773500-01
Chr01	irgsp1_rep	CDS	32697898	32698167	.	-	0	Parent=Os01t0773500-01
Chr01	irgsp1_rep	three_prime_UTR	32697780	32697897	.	-	.	Parent=Os01t0773500-01
Chr01	irgsp1_rep	three_prime_UTR	32696682	32697013	.	-	.	Parent=Os01t0773500-01
Chr01	irgsp1_rep	mRNA	32699034	32708541	.	+	.	ID=Os01t0773600-01;Name=Os01t0773600-01;Locus_id=Os01g0773600;Note=Glycoside hydrolase%2C family 47 protein.;Transcript_evidence=AK067004 (DDBJ%2C Best hit);ORF_evidence=B6SH10 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: mannosyl-oligosaccharide 1%2C2-alpha-mannosidase activity (GO:0004571),Molecular Function: calcium ion binding (GO:0005509);InterPro=Glycoside hydrolase%2C family 47 (IPR001382);NIAS_FLcDNA=J013091F09;Expression=AK067004;TENOR=Os01t0773600-01;KEGG=Os01t0773600-01
Chr01	irgsp1_rep	five_prime_UTR	32699034	32699062	.	+	.	Parent=Os01t0773600-01
Chr01	irgsp1_rep	CDS	32699063	32699239	.	+	0	Parent=Os01t0773600-01
Chr01	irgsp1_rep	CDS	32699909	32700028	.	+	0	Parent=Os01t0773600-01
Chr01	irgsp1_rep	CDS	32700124	32700216	.	+	0	Parent=Os01t0773600-01
Chr01	irgsp1_rep	CDS	32700939	32701025	.	+	0	Parent=Os01t0773600-01
Chr01	irgsp1_rep	CDS	32701570	32701660	.	+	0	Parent=Os01t0773600-01
Chr01	irgsp1_rep	CDS	32702806	32702859	.	+	2	Parent=Os01t0773600-01
Chr01	irgsp1_rep	CDS	32703293	32703367	.	+	2	Parent=Os01t0773600-01
Chr01	irgsp1_rep	CDS	32703815	32703924	.	+	2	Parent=Os01t0773600-01
Chr01	irgsp1_rep	CDS	32704350	32704400	.	+	0	Parent=Os01t0773600-01
Chr01	irgsp1_rep	CDS	32704896	32704984	.	+	0	Parent=Os01t0773600-01
Chr01	irgsp1_rep	CDS	32705260	32705341	.	+	1	Parent=Os01t0773600-01
Chr01	irgsp1_rep	CDS	32705422	32705535	.	+	0	Parent=Os01t0773600-01
Chr01	irgsp1_rep	CDS	32705757	32705836	.	+	0	Parent=Os01t0773600-01
Chr01	irgsp1_rep	CDS	32706491	32706626	.	+	1	Parent=Os01t0773600-01
Chr01	irgsp1_rep	CDS	32706952	32707022	.	+	0	Parent=Os01t0773600-01
Chr01	irgsp1_rep	CDS	32707105	32707339	.	+	1	Parent=Os01t0773600-01
Chr01	irgsp1_rep	CDS	32707751	32708140	.	+	0	Parent=Os01t0773600-01
Chr01	irgsp1_rep	three_prime_UTR	32708141	32708541	.	+	.	Parent=Os01t0773600-01
Chr01	irgsp1_rep	mRNA	32708550	32709283	.	-	.	ID=Os01t0773700-02;Name=Os01t0773700-02;Locus_id=Os01g0773700;CGSNL Gene Symbol=PSBW;CGSNL Gene Name=PHOTOSYSTEM II SUBUNIT;Oryzabase Gene Symbol Synonym(s)=PsbW;Oryzabase Gene Name Synonym(s)=PSII subunit PsbW%2C photosystem II subunit PsbW;Note=Similar to Photosystem II reaction center W protein (PSII 6.1 kDa protein) (Fragment).;Transcript_evidence=AK060438 (DDBJ%2C Best hit),AK060476 (DDBJ%2C Best hit),AK119161 (DDBJ%2C Best hit);ORF_evidence=Q5ZBY9 (UniProt);NIAS_FLcDNA=001-011-D03,001-012-F04,001-036-D04;Oryzabase=9600;Expression=AK060438;TENOR=Os01t0773700-02;KEGG=Os01t0773700-02
Chr01	irgsp1_rep	five_prime_UTR	32709213	32709283	.	-	.	Parent=Os01t0773700-02
Chr01	irgsp1_rep	CDS	32709146	32709212	.	-	0	Parent=Os01t0773700-02
Chr01	irgsp1_rep	CDS	32708729	32709036	.	-	2	Parent=Os01t0773700-02
Chr01	irgsp1_rep	three_prime_UTR	32708550	32708728	.	-	.	Parent=Os01t0773700-02
Chr01	irgsp1_rep	mRNA	32714779	32716649	.	+	.	ID=Os01t0773800-00;Name=Os01t0773800-00;Locus_id=Os01g0773800;Oryzabase Gene Symbol Synonym(s)=OsbHLH185%2C bHLH185;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 185;Note=Hypothetical conserved gene.;Transcript_evidence=EU948863 (DDBJ);ORF_evidence=NP_001172584.1 (RefSeq);InterPro=Helix-loop-helix DNA-binding (IPR011598);Oryzabase=22856;TENOR=Os01t0773800-00;KEGG=Os01t0773800-00
Chr01	irgsp1_rep	CDS	32714779	32715270	.	+	0	Parent=Os01t0773800-00
Chr01	irgsp1_rep	CDS	32715378	32715653	.	+	0	Parent=Os01t0773800-00
Chr01	irgsp1_rep	CDS	32716497	32716649	.	+	0	Parent=Os01t0773800-00
Chr01	irgsp1_rep	mRNA	32721463	32721914	.	-	.	ID=Os01t0774001-00;Name=Os01t0774001-00;Locus_id=Os01g0774001;Note=Similar to 001-208-D07%2C full insert sequence.;Transcript_evidence=FP099404 (DDBJ);ORF_evidence=B7EZ27 (UniProt);TENOR=Os01t0774001-00
Chr01	irgsp1_rep	five_prime_UTR	32721745	32721914	.	-	.	Parent=Os01t0774001-00
Chr01	irgsp1_rep	CDS	32721547	32721744	.	-	0	Parent=Os01t0774001-00
Chr01	irgsp1_rep	three_prime_UTR	32721463	32721546	.	-	.	Parent=Os01t0774001-00
Chr01	irgsp1_rep	mRNA	32726646	32726966	.	-	.	ID=Os01t0774100-00;Name=Os01t0774100-00;Locus_id=Os01g0774100;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001172585.1 (RefSeq);InterPro=Gnk2-homologous domain (IPR002902);TENOR=Os01t0774100-00;KEGG=Os01t0774100-00
Chr01	irgsp1_rep	CDS	32726646	32726966	.	-	0	Parent=Os01t0774100-00
Chr01	irgsp1_rep	mRNA	32735360	32739829	.	+	.	ID=Os01t0774200-01;Name=Os01t0774200-01;Locus_id=Os01g0774200;Note=FBD domain containing protein.;Transcript_evidence=AK120412 (DDBJ%2C Best hit);ORF_evidence=B9ETA1 (UniProt);InterPro=FBD (IPR013596);NIAS_FLcDNA=J013092B14;Oryzabase=17572;Expression=AK120412;TENOR=Os01t0774200-01;KEGG=Os01t0774200-01
Chr01	irgsp1_rep	five_prime_UTR	32735360	32735693	.	+	.	Parent=Os01t0774200-01
Chr01	irgsp1_rep	five_prime_UTR	32736219	32736443	.	+	.	Parent=Os01t0774200-01
Chr01	irgsp1_rep	five_prime_UTR	32738169	32738208	.	+	.	Parent=Os01t0774200-01
Chr01	irgsp1_rep	CDS	32738209	32738284	.	+	0	Parent=Os01t0774200-01
Chr01	irgsp1_rep	CDS	32738365	32738474	.	+	2	Parent=Os01t0774200-01
Chr01	irgsp1_rep	CDS	32738748	32738978	.	+	0	Parent=Os01t0774200-01
Chr01	irgsp1_rep	CDS	32739074	32739226	.	+	0	Parent=Os01t0774200-01
Chr01	irgsp1_rep	CDS	32739309	32739578	.	+	0	Parent=Os01t0774200-01
Chr01	irgsp1_rep	three_prime_UTR	32739579	32739829	.	+	.	Parent=Os01t0774200-01
Chr01	irgsp1_rep	mRNA	32746028	32746482	.	+	.	ID=Os01t0774400-00;Name=Os01t0774400-00;Locus_id=Os01g0774400;Oryzabase Gene Symbol Synonym(s)=OsFbox043%2C OsFbox43%2C Os_F0563;Oryzabase Gene Name Synonym(s)=F-box protein 43;Note=Hypothetical conserved gene.;Transcript_evidence=CT834931 (DDBJ%2C Best hit);ORF_evidence=GeneMark;InterPro=Protein of unknown function DUF295 (IPR005174);Oryzabase=16842;TENOR=Os01t0774400-00;KEGG=Os01t0774400-00
Chr01	irgsp1_rep	CDS	32746028	32746309	.	+	0	Parent=Os01t0774400-00
Chr01	irgsp1_rep	three_prime_UTR	32746310	32746482	.	+	.	Parent=Os01t0774400-00
Chr01	irgsp1_rep	mRNA	32747576	32757798	.	-	.	ID=Os01t0774500-01;Name=Os01t0774500-01;Locus_id=Os01g0774500;Oryzabase Gene Symbol Synonym(s)=OsSTA35;Note=Similar to H1flk (Fragment).;Transcript_evidence=AK069241 (DDBJ%2C Best hit);ORF_evidence=Q7DM36 (UniProt);GO=Molecular Function: ATP binding (GO:0005524),Molecular Function: kinase activity (GO:0016301);InterPro=Zeta toxin domain (IPR010488);NIAS_FLcDNA=J023010E17;Oryzabase=19342;Expression=AK069241;TENOR=Os01t0774500-01;KEGG=Os01t0774500-01
Chr01	irgsp1_rep	five_prime_UTR	32757729	32757798	.	-	.	Parent=Os01t0774500-01
Chr01	irgsp1_rep	CDS	32757542	32757728	.	-	0	Parent=Os01t0774500-01
Chr01	irgsp1_rep	CDS	32749819	32750042	.	-	2	Parent=Os01t0774500-01
Chr01	irgsp1_rep	CDS	32749660	32749718	.	-	0	Parent=Os01t0774500-01
Chr01	irgsp1_rep	CDS	32749285	32749515	.	-	1	Parent=Os01t0774500-01
Chr01	irgsp1_rep	CDS	32749059	32749188	.	-	1	Parent=Os01t0774500-01
Chr01	irgsp1_rep	CDS	32748650	32748960	.	-	0	Parent=Os01t0774500-01
Chr01	irgsp1_rep	CDS	32748413	32748554	.	-	1	Parent=Os01t0774500-01
Chr01	irgsp1_rep	CDS	32748068	32748313	.	-	0	Parent=Os01t0774500-01
Chr01	irgsp1_rep	three_prime_UTR	32747576	32748067	.	-	.	Parent=Os01t0774500-01
Chr01	irgsp1_rep	mRNA	32759157	32764753	.	-	.	ID=Os01t0775100-01;Name=Os01t0775100-01;Locus_id=Os01g0775100;CGSNL Gene Symbol=PL3;Oryzabase Gene Symbol Synonym(s)=OsPL3;Oryzabase Gene Name Synonym(s)=PLUS3 domain-containing protein;Note=Plus-3 domain containing protein.;Transcript_evidence=AK101217 (DDBJ%2C Best hit);ORF_evidence=Q5ZC03 (UniProt);GO=Biological Process: transcription initiation%2C DNA-dependent (GO:0006352),Biological Process: histone modification (GO:0016570),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Plus-3 (IPR004343),Plus-3 domain%2C subgroup (IPR018144);NIAS_FLcDNA=J033031C11;Oryzabase=23493;TENOR=Os01t0775100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	32764426	32764753	.	-	.	Parent=Os01t0775100-01
Chr01	irgsp1_rep	CDS	32764410	32764425	.	-	0	Parent=Os01t0775100-01
Chr01	irgsp1_rep	CDS	32762779	32762913	.	-	2	Parent=Os01t0775100-01
Chr01	irgsp1_rep	CDS	32760797	32762711	.	-	2	Parent=Os01t0775100-01
Chr01	irgsp1_rep	CDS	32760035	32760150	.	-	1	Parent=Os01t0775100-01
Chr01	irgsp1_rep	CDS	32759827	32759918	.	-	2	Parent=Os01t0775100-01
Chr01	irgsp1_rep	CDS	32759567	32759674	.	-	0	Parent=Os01t0775100-01
Chr01	irgsp1_rep	three_prime_UTR	32759157	32759566	.	-	.	Parent=Os01t0775100-01
Chr01	irgsp1_rep	mRNA	32759574	32760911	.	+	.	ID=Os01t0775150-00;Name=Os01t0775150-00;Locus_id=Os01g0775150;Note=Non-protein coding transcript.;Transcript_evidence=BT018258 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0775150-00
Chr01	irgsp1_rep	exon	32759574	32759677	.	+	.	Parent=Os01t0775150-00
Chr01	irgsp1_rep	exon	32759831	32759912	.	+	.	Parent=Os01t0775150-00
Chr01	irgsp1_rep	exon	32760027	32760152	.	+	.	Parent=Os01t0775150-00
Chr01	irgsp1_rep	exon	32760794	32760911	.	+	.	Parent=Os01t0775150-00
Chr01	irgsp1_rep	mRNA	32768618	32773207	.	+	.	ID=Os01t0775200-01;Name=Os01t0775200-01;Locus_id=Os01g0775200;Note=Conserved hypothetical protein.;Transcript_evidence=AK120210 (DDBJ%2C Best hit);ORF_evidence=B8AA70 (UniProt);NIAS_FLcDNA=J013038N24;TENOR=Os01t0775200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	32768618	32768972	.	+	0	Parent=Os01t0775200-01
Chr01	irgsp1_rep	CDS	32769851	32769921	.	+	2	Parent=Os01t0775200-01
Chr01	irgsp1_rep	three_prime_UTR	32769922	32770891	.	+	.	Parent=Os01t0775200-01
Chr01	irgsp1_rep	three_prime_UTR	32770977	32771144	.	+	.	Parent=Os01t0775200-01
Chr01	irgsp1_rep	three_prime_UTR	32771231	32771317	.	+	.	Parent=Os01t0775200-01
Chr01	irgsp1_rep	three_prime_UTR	32771407	32771571	.	+	.	Parent=Os01t0775200-01
Chr01	irgsp1_rep	three_prime_UTR	32771646	32773207	.	+	.	Parent=Os01t0775200-01
Chr01	irgsp1_rep	mRNA	32768781	32773128	.	+	.	ID=Os01t0775200-02;Name=Os01t0775200-02;Locus_id=Os01g0775200;Note=Conserved hypothetical protein.;Transcript_evidence=AK102916 (DDBJ%2C Best hit);ORF_evidence=B8AA70 (UniProt);NIAS_FLcDNA=J033114A07;TENOR=Os01t0775200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	32768781	32768782	.	+	.	Parent=Os01t0775200-02
Chr01	irgsp1_rep	CDS	32768783	32768972	.	+	0	Parent=Os01t0775200-02
Chr01	irgsp1_rep	CDS	32769851	32769921	.	+	2	Parent=Os01t0775200-02
Chr01	irgsp1_rep	three_prime_UTR	32769922	32770891	.	+	.	Parent=Os01t0775200-02
Chr01	irgsp1_rep	three_prime_UTR	32770977	32771144	.	+	.	Parent=Os01t0775200-02
Chr01	irgsp1_rep	three_prime_UTR	32771231	32771317	.	+	.	Parent=Os01t0775200-02
Chr01	irgsp1_rep	three_prime_UTR	32771407	32771571	.	+	.	Parent=Os01t0775200-02
Chr01	irgsp1_rep	three_prime_UTR	32771646	32773128	.	+	.	Parent=Os01t0775200-02
Chr01	irgsp1_rep	mRNA	32768848	32773224	.	+	.	ID=Os01t0775200-03;Name=Os01t0775200-03;Locus_id=Os01g0775200;Note=Conserved hypothetical protein.;Transcript_evidence=AK102215 (DDBJ%2C Best hit);ORF_evidence=B8AA70 (UniProt);NIAS_FLcDNA=J033087K21;TENOR=Os01t0775200-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	32768848	32768972	.	+	0	Parent=Os01t0775200-03
Chr01	irgsp1_rep	CDS	32769851	32770124	.	+	1	Parent=Os01t0775200-03
Chr01	irgsp1_rep	three_prime_UTR	32770125	32770891	.	+	.	Parent=Os01t0775200-03
Chr01	irgsp1_rep	three_prime_UTR	32770977	32771144	.	+	.	Parent=Os01t0775200-03
Chr01	irgsp1_rep	three_prime_UTR	32771231	32771317	.	+	.	Parent=Os01t0775200-03
Chr01	irgsp1_rep	three_prime_UTR	32771407	32771571	.	+	.	Parent=Os01t0775200-03
Chr01	irgsp1_rep	three_prime_UTR	32771646	32773224	.	+	.	Parent=Os01t0775200-03
Chr01	irgsp1_rep	mRNA	32773565	32783571	.	-	.	ID=Os01t0775300-01;Name=Os01t0775300-01;Locus_id=Os01g0775300;Oryzabase Gene Symbol Synonym(s)=OsM1%2C M1%2C OsM1a%2C OsM1b OsM1c;Oryzabase Gene Name Synonym(s)=single domain MDC protein 1%2C single MATH domain containing protein 1;Note=MATH domain containing protein.;Transcript_evidence=AK102133 (DDBJ%2C Best hit);ORF_evidence=A2ZYC7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=MATH (IPR002083),TRAF-like (IPR008974),TRAF-type (IPR013322);NIAS_FLcDNA=J033085E13;Oryzabase=21182;TENOR=Os01t0775300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	32783570	32783571	.	-	.	Parent=Os01t0775300-01
Chr01	irgsp1_rep	CDS	32783455	32783569	.	-	0	Parent=Os01t0775300-01
Chr01	irgsp1_rep	CDS	32782620	32782850	.	-	2	Parent=Os01t0775300-01
Chr01	irgsp1_rep	CDS	32781061	32781181	.	-	2	Parent=Os01t0775300-01
Chr01	irgsp1_rep	CDS	32780808	32780896	.	-	1	Parent=Os01t0775300-01
Chr01	irgsp1_rep	CDS	32780663	32780731	.	-	2	Parent=Os01t0775300-01
Chr01	irgsp1_rep	CDS	32780461	32780590	.	-	2	Parent=Os01t0775300-01
Chr01	irgsp1_rep	CDS	32779773	32779931	.	-	1	Parent=Os01t0775300-01
Chr01	irgsp1_rep	CDS	32779276	32779645	.	-	1	Parent=Os01t0775300-01
Chr01	irgsp1_rep	CDS	32778166	32778275	.	-	0	Parent=Os01t0775300-01
Chr01	irgsp1_rep	CDS	32777115	32777265	.	-	1	Parent=Os01t0775300-01
Chr01	irgsp1_rep	CDS	32776822	32777025	.	-	0	Parent=Os01t0775300-01
Chr01	irgsp1_rep	CDS	32776602	32776729	.	-	0	Parent=Os01t0775300-01
Chr01	irgsp1_rep	CDS	32776338	32776524	.	-	1	Parent=Os01t0775300-01
Chr01	irgsp1_rep	CDS	32773736	32775583	.	-	0	Parent=Os01t0775300-01
Chr01	irgsp1_rep	three_prime_UTR	32773565	32773735	.	-	.	Parent=Os01t0775300-01
Chr01	irgsp1_rep	mRNA	32775146	32782712	.	+	.	ID=Os01t0775350-00;Name=Os01t0775350-00;Locus_id=Os01g0775350;Note=Hypothetical protein.;Transcript_evidence=tplb0049h11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0775350-00
Chr01	irgsp1_rep	five_prime_UTR	32775146	32775583	.	+	.	Parent=Os01t0775350-00
Chr01	irgsp1_rep	five_prime_UTR	32776338	32776500	.	+	.	Parent=Os01t0775350-00
Chr01	irgsp1_rep	five_prime_UTR	32776570	32776716	.	+	.	Parent=Os01t0775350-00
Chr01	irgsp1_rep	five_prime_UTR	32776804	32777024	.	+	.	Parent=Os01t0775350-00
Chr01	irgsp1_rep	five_prime_UTR	32777113	32777268	.	+	.	Parent=Os01t0775350-00
Chr01	irgsp1_rep	five_prime_UTR	32778169	32778274	.	+	.	Parent=Os01t0775350-00
Chr01	irgsp1_rep	five_prime_UTR	32779275	32779363	.	+	.	Parent=Os01t0775350-00
Chr01	irgsp1_rep	CDS	32779364	32779645	.	+	0	Parent=Os01t0775350-00
Chr01	irgsp1_rep	CDS	32779773	32779844	.	+	0	Parent=Os01t0775350-00
Chr01	irgsp1_rep	three_prime_UTR	32779845	32779930	.	+	.	Parent=Os01t0775350-00
Chr01	irgsp1_rep	three_prime_UTR	32780460	32780579	.	+	.	Parent=Os01t0775350-00
Chr01	irgsp1_rep	three_prime_UTR	32780653	32780738	.	+	.	Parent=Os01t0775350-00
Chr01	irgsp1_rep	three_prime_UTR	32780815	32780880	.	+	.	Parent=Os01t0775350-00
Chr01	irgsp1_rep	three_prime_UTR	32781042	32781177	.	+	.	Parent=Os01t0775350-00
Chr01	irgsp1_rep	three_prime_UTR	32782623	32782712	.	+	.	Parent=Os01t0775350-00
Chr01	irgsp1_rep	mRNA	32788488	32792747	.	-	.	ID=Os01t0775400-01;Name=Os01t0775400-01;Locus_id=Os01g0775400;CGSNL Gene Symbol=CKX5;CGSNL Gene Name=CYTOKININ OXIDASE/DEHYDROGENASE 5;Oryzabase Gene Symbol Synonym(s)=OsCKX5%2C ckx5;Oryzabase Gene Name Synonym(s)=Putative cytokinin oxidase 5%2C cytokinin oxidase 5;Note=Similar to Cytokinin dehydrogenase 5 precursor (EC 1.5.99.12) (Cytokinin oxidase 5) (CKO5) (AtCKX5) (AtCKX6).;Transcript_evidence=AK101022 (DDBJ%2C Best hit);ORF_evidence=Q5ZAY9 (UniProt);GO=Biological Process: cytokinin metabolic process (GO:0009690),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: cytokinin dehydrogenase activity (GO:0019139),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Oxygen oxidoreductase covalent FAD-binding site (IPR006093),FAD linked oxidase%2C N-terminal (IPR006094),Cytokinin dehydrogenase 1%2C FAD/cytokinin binding domain (IPR015345),FAD-linked oxidase-like%2C C-terminal (IPR016164),FAD-binding%2C type 2 (IPR016166),FAD-binding%2C type 2%2C subdomain 1 (IPR016167),FAD-linked oxidase%2C FAD-binding%2C subdomain 2 (IPR016168);NIAS_FLcDNA=J023149O03;Oryzabase=8395;Expression=AK101022;TENOR=Os01t0775400-01;KEGG=Os01t0775400-01 (EC:1.5.99.12)
Chr01	irgsp1_rep	five_prime_UTR	32792636	32792747	.	-	.	Parent=Os01t0775400-01
Chr01	irgsp1_rep	CDS	32792026	32792635	.	-	0	Parent=Os01t0775400-01
Chr01	irgsp1_rep	CDS	32791749	32791876	.	-	2	Parent=Os01t0775400-01
Chr01	irgsp1_rep	CDS	32790513	32790782	.	-	0	Parent=Os01t0775400-01
Chr01	irgsp1_rep	CDS	32789761	32790026	.	-	0	Parent=Os01t0775400-01
Chr01	irgsp1_rep	CDS	32788699	32789029	.	-	1	Parent=Os01t0775400-01
Chr01	irgsp1_rep	three_prime_UTR	32788488	32788698	.	-	.	Parent=Os01t0775400-01
Chr01	irgsp1_rep	mRNA	32812249	32814794	.	-	.	ID=Os01t0775500-01;Name=Os01t0775500-01;Locus_id=Os01g0775500;Note=Mannose-binding lectin domain containing protein.;Transcript_evidence=AK100936 (DDBJ%2C Best hit);ORF_evidence=B9ETA3 (UniProt);InterPro=Mannose-binding lectin (IPR001229);NIAS_FLcDNA=J023136M21;TENOR=Os01t0775500-01
Chr01	irgsp1_rep	five_prime_UTR	32814643	32814794	.	-	.	Parent=Os01t0775500-01
Chr01	irgsp1_rep	CDS	32813640	32813855	.	-	0	Parent=Os01t0775500-01
Chr01	irgsp1_rep	CDS	32812872	32813324	.	-	0	Parent=Os01t0775500-01
Chr01	irgsp1_rep	CDS	32812520	32812762	.	-	0	Parent=Os01t0775500-01
Chr01	irgsp1_rep	CDS	32812249	32812384	.	-	0	Parent=Os01t0775500-01
Chr01	irgsp1_rep	mRNA	32815113	32819452	.	-	.	ID=Os01t0775600-01;Name=Os01t0775600-01;Locus_id=Os01g0775600;Note=CT11-RanBPM domain containing protein.;Transcript_evidence=AK122081 (DDBJ%2C Best hit);ORF_evidence=E6NU60 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=LisH dimerisation motif (IPR006594),CTLH%2C C-terminal LisH motif (IPR006595),Ran binding protein-like%2C CRA domain (IPR013144),Ran binding protein%2C CRA domain (IPR019589);NIAS_FLcDNA=J033121A05;Expression=AK122081;TENOR=Os01t0775600-01;KEGG=Os01t0775600-01
Chr01	irgsp1_rep	five_prime_UTR	32819293	32819452	.	-	.	Parent=Os01t0775600-01
Chr01	irgsp1_rep	CDS	32819257	32819292	.	-	0	Parent=Os01t0775600-01
Chr01	irgsp1_rep	CDS	32817937	32818078	.	-	0	Parent=Os01t0775600-01
Chr01	irgsp1_rep	CDS	32816896	32817043	.	-	2	Parent=Os01t0775600-01
Chr01	irgsp1_rep	CDS	32816745	32816820	.	-	1	Parent=Os01t0775600-01
Chr01	irgsp1_rep	CDS	32815964	32816075	.	-	0	Parent=Os01t0775600-01
Chr01	irgsp1_rep	CDS	32815769	32815860	.	-	2	Parent=Os01t0775600-01
Chr01	irgsp1_rep	CDS	32815488	32815532	.	-	0	Parent=Os01t0775600-01
Chr01	irgsp1_rep	three_prime_UTR	32815113	32815487	.	-	.	Parent=Os01t0775600-01
Chr01	irgsp1_rep	mRNA	32815111	32819425	.	-	.	ID=Os01t0775600-02;Name=Os01t0775600-02;Locus_id=Os01g0775600;Note=CT11-RanBPM domain containing protein.;Transcript_evidence=AK060390 (DDBJ%2C Best hit);ORF_evidence=E6NU60 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=LisH dimerisation motif (IPR006594),CTLH%2C C-terminal LisH motif (IPR006595),Ran binding protein-like%2C CRA domain (IPR013144),Ran binding protein%2C CRA domain (IPR019589);NIAS_FLcDNA=001-009-H03;TENOR=Os01t0775600-02
Chr01	irgsp1_rep	five_prime_UTR	32819293	32819425	.	-	.	Parent=Os01t0775600-02
Chr01	irgsp1_rep	CDS	32819257	32819292	.	-	0	Parent=Os01t0775600-02
Chr01	irgsp1_rep	CDS	32817937	32818078	.	-	0	Parent=Os01t0775600-02
Chr01	irgsp1_rep	CDS	32816896	32817043	.	-	2	Parent=Os01t0775600-02
Chr01	irgsp1_rep	CDS	32816745	32816820	.	-	1	Parent=Os01t0775600-02
Chr01	irgsp1_rep	CDS	32815964	32816075	.	-	0	Parent=Os01t0775600-02
Chr01	irgsp1_rep	CDS	32815769	32815860	.	-	2	Parent=Os01t0775600-02
Chr01	irgsp1_rep	CDS	32815488	32815532	.	-	0	Parent=Os01t0775600-02
Chr01	irgsp1_rep	three_prime_UTR	32815111	32815487	.	-	.	Parent=Os01t0775600-02
Chr01	irgsp1_rep	mRNA	32830891	32836318	.	-	.	ID=Os01t0775750-00;Name=Os01t0775750-00;Locus_id=Os01g0775750;Note=Hypothetical protein.;Transcript_evidence=tplb0040m06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0775750-00
Chr01	irgsp1_rep	five_prime_UTR	32836317	32836318	.	-	.	Parent=Os01t0775750-00
Chr01	irgsp1_rep	CDS	32835897	32836316	.	-	0	Parent=Os01t0775750-00
Chr01	irgsp1_rep	CDS	32830891	32831356	.	-	0	Parent=Os01t0775750-00
Chr01	irgsp1_rep	mRNA	32835841	32838252	.	+	.	ID=Os01t0776300-01;Name=Os01t0776300-01;Locus_id=Os01g0776300;Note=Protein of unknown function DUF26 domain containing protein.;Transcript_evidence=AK287478 (DDBJ%2C Best hit);ORF_evidence=NP_001044413.2 (RefSeq);InterPro=Gnk2-homologous domain (IPR002902);NIAS_FLcDNA=J043023I11;TENOR=Os01t0776300-01;KEGG=Os01t0776300-01
Chr01	irgsp1_rep	five_prime_UTR	32835841	32836454	.	+	.	Parent=Os01t0776300-01
Chr01	irgsp1_rep	five_prime_UTR	32836585	32837018	.	+	.	Parent=Os01t0776300-01
Chr01	irgsp1_rep	CDS	32837019	32837918	.	+	0	Parent=Os01t0776300-01
Chr01	irgsp1_rep	three_prime_UTR	32837919	32838252	.	+	.	Parent=Os01t0776300-01
Chr01	irgsp1_rep	mRNA	32838525	32842473	.	-	.	ID=Os01t0776400-01;Name=Os01t0776400-01;Locus_id=Os01g0776400;Oryzabase Gene Symbol Synonym(s)=OsWD40-25;Note=Similar to predicted protein.;Transcript_evidence=AK243586 (DDBJ%2C Best hit);ORF_evidence=XP_002886225.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J100082P18;Oryzabase=10706;TENOR=Os01t0776400-01;KEGG=Os01t0776400-01
Chr01	irgsp1_rep	five_prime_UTR	32842390	32842473	.	-	.	Parent=Os01t0776400-01
Chr01	irgsp1_rep	CDS	32842186	32842389	.	-	0	Parent=Os01t0776400-01
Chr01	irgsp1_rep	CDS	32841968	32842071	.	-	0	Parent=Os01t0776400-01
Chr01	irgsp1_rep	CDS	32841678	32841744	.	-	1	Parent=Os01t0776400-01
Chr01	irgsp1_rep	CDS	32841402	32841546	.	-	0	Parent=Os01t0776400-01
Chr01	irgsp1_rep	CDS	32841144	32841281	.	-	2	Parent=Os01t0776400-01
Chr01	irgsp1_rep	CDS	32840552	32840691	.	-	2	Parent=Os01t0776400-01
Chr01	irgsp1_rep	CDS	32840342	32840389	.	-	0	Parent=Os01t0776400-01
Chr01	irgsp1_rep	CDS	32839960	32840070	.	-	0	Parent=Os01t0776400-01
Chr01	irgsp1_rep	CDS	32839699	32839877	.	-	0	Parent=Os01t0776400-01
Chr01	irgsp1_rep	CDS	32839503	32839624	.	-	1	Parent=Os01t0776400-01
Chr01	irgsp1_rep	CDS	32839009	32839085	.	-	2	Parent=Os01t0776400-01
Chr01	irgsp1_rep	CDS	32838821	32838922	.	-	0	Parent=Os01t0776400-01
Chr01	irgsp1_rep	three_prime_UTR	32838525	32838820	.	-	.	Parent=Os01t0776400-01
Chr01	irgsp1_rep	mRNA	32842696	32847884	.	+	.	ID=Os01t0776500-01;Name=Os01t0776500-01;Locus_id=Os01g0776500;Note=Peptidase cysteine/serine%2C trypsin-like domain containing protein.;Transcript_evidence=AK068921 (DDBJ%2C Best hit);ORF_evidence=B9ETA5 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Peptidase cysteine/serine%2C trypsin-like (IPR009003);NIAS_FLcDNA=J023001D01;TENOR=Os01t0776500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	32842696	32842874	.	+	.	Parent=Os01t0776500-01
Chr01	irgsp1_rep	five_prime_UTR	32843122	32844155	.	+	.	Parent=Os01t0776500-01
Chr01	irgsp1_rep	CDS	32844156	32844289	.	+	0	Parent=Os01t0776500-01
Chr01	irgsp1_rep	CDS	32845798	32845844	.	+	1	Parent=Os01t0776500-01
Chr01	irgsp1_rep	CDS	32846168	32846230	.	+	2	Parent=Os01t0776500-01
Chr01	irgsp1_rep	CDS	32846337	32846468	.	+	2	Parent=Os01t0776500-01
Chr01	irgsp1_rep	CDS	32846542	32846666	.	+	2	Parent=Os01t0776500-01
Chr01	irgsp1_rep	CDS	32846747	32847019	.	+	0	Parent=Os01t0776500-01
Chr01	irgsp1_rep	CDS	32847128	32847261	.	+	0	Parent=Os01t0776500-01
Chr01	irgsp1_rep	CDS	32847382	32847468	.	+	1	Parent=Os01t0776500-01
Chr01	irgsp1_rep	CDS	32847576	32847690	.	+	1	Parent=Os01t0776500-01
Chr01	irgsp1_rep	three_prime_UTR	32847691	32847884	.	+	.	Parent=Os01t0776500-01
Chr01	irgsp1_rep	mRNA	32848286	32852539	.	-	.	ID=Os01t0776600-01;Name=Os01t0776600-01;Locus_id=Os01g0776600;RAP-DB Gene Symbol Synonym(s)=OsPAP10a;RAP-DB Gene Name Synonym(s)=purple acid phosphatase 10a;CGSNL Gene Symbol=PAP10A;CGSNL Gene Name=PURPLE ACID PHOSPHATASE 10A;Oryzabase Gene Symbol Synonym(s)=OsPAP10a%2C PAP10;Oryzabase Gene Name Synonym(s)=purple acid phosphatase 10a;Note=Group Ia of purple acid phosphatase%2C Root-associated APase%2C Response to phosphate starvation%2C Utilization of organic phosphorus;Transcript_evidence=AK071643;ORF_evidence=Q8LJ43;GO=Molecular Function: acid phosphatase activity (GO:0003993),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: metal ion binding (GO:0046872);InterPro=Purple acid phosphatase-like%2C N-terminal (IPR008963),Metallo-dependent phosphatase-like (IPR029052),Purple acid phosphatase%2C N-terminal (IPR015914),Purple acid phosphatase%2C metallophosphatase domain (IPR041792),Calcineurin-like phosphoesterase domain%2C ApaH type (IPR004843),Iron/zinc purple acid phosphatase-like C-terminal domain (IPR025733);NIAS_FLcDNA=J023105J09;Manual Curation=August 5%2C 2020;Literature_PMID=22805094;Oryzabase=11382;Expression=AK071643;TENOR=Os01t0776600-01;KEGG=Os01t0776600-01 (EC:3.1.3.2)
Chr01	irgsp1_rep	five_prime_UTR	32852268	32852539	.	-	.	Parent=Os01t0776600-01
Chr01	irgsp1_rep	CDS	32852091	32852267	.	-	0	Parent=Os01t0776600-01
Chr01	irgsp1_rep	CDS	32850605	32850805	.	-	0	Parent=Os01t0776600-01
Chr01	irgsp1_rep	CDS	32850419	32850530	.	-	0	Parent=Os01t0776600-01
Chr01	irgsp1_rep	CDS	32850092	32850318	.	-	2	Parent=Os01t0776600-01
Chr01	irgsp1_rep	CDS	32849828	32849966	.	-	0	Parent=Os01t0776600-01
Chr01	irgsp1_rep	CDS	32849363	32849583	.	-	2	Parent=Os01t0776600-01
Chr01	irgsp1_rep	CDS	32848921	32849042	.	-	0	Parent=Os01t0776600-01
Chr01	irgsp1_rep	CDS	32848622	32848820	.	-	1	Parent=Os01t0776600-01
Chr01	irgsp1_rep	three_prime_UTR	32848286	32848621	.	-	.	Parent=Os01t0776600-01
Chr01	irgsp1_rep	mRNA	32848303	32850801	.	-	.	ID=Os01t0776600-02;Name=Os01t0776600-02;Locus_id=Os01g0776600;CGSNL Gene Symbol=PAP10A;CGSNL Gene Name=PURPLE ACID PHOSPHATASE 10A;Oryzabase Gene Symbol Synonym(s)=OsPAP10a%2C PAP10;Oryzabase Gene Name Synonym(s)=purple acid phosphatase 10a;Note=Similar to predicted protein.;Transcript_evidence=AK059025 (DDBJ%2C Best hit);ORF_evidence=Q9ZS50 (UniProt);GO=Molecular Function: acid phosphatase activity (GO:0003993),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: metal ion binding (GO:0046872);InterPro=Metallophosphoesterase domain (IPR004843),Purple acid phosphatase-like%2C N-terminal (IPR008963),Purple acid phosphatase%2C N-terminal (IPR015914);NIAS_FLcDNA=001-021-B09;Oryzabase=11382;Expression=AK059025;TENOR=Os01t0776600-02;KEGG=Os01t0776600-02
Chr01	irgsp1_rep	five_prime_UTR	32850800	32850801	.	-	.	Parent=Os01t0776600-02
Chr01	irgsp1_rep	CDS	32850605	32850799	.	-	0	Parent=Os01t0776600-02
Chr01	irgsp1_rep	CDS	32850419	32850530	.	-	0	Parent=Os01t0776600-02
Chr01	irgsp1_rep	CDS	32850092	32850318	.	-	2	Parent=Os01t0776600-02
Chr01	irgsp1_rep	CDS	32849828	32849966	.	-	0	Parent=Os01t0776600-02
Chr01	irgsp1_rep	CDS	32849363	32849583	.	-	2	Parent=Os01t0776600-02
Chr01	irgsp1_rep	CDS	32848921	32849042	.	-	0	Parent=Os01t0776600-02
Chr01	irgsp1_rep	CDS	32848622	32848820	.	-	1	Parent=Os01t0776600-02
Chr01	irgsp1_rep	three_prime_UTR	32848303	32848621	.	-	.	Parent=Os01t0776600-02
Chr01	irgsp1_rep	mRNA	32848291	32850121	.	-	.	ID=Os01t0776600-03;Name=Os01t0776600-03;Locus_id=Os01g0776600;CGSNL Gene Symbol=PAP10A;CGSNL Gene Name=PURPLE ACID PHOSPHATASE 10A;Oryzabase Gene Symbol Synonym(s)=OsPAP10a%2C PAP10;Oryzabase Gene Name Synonym(s)=purple acid phosphatase 10a;Note=Similar to predicted protein.;Transcript_evidence=AK060314 (DDBJ%2C Best hit);ORF_evidence=Q9ZS50 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Metallophosphoesterase domain (IPR004843);NIAS_FLcDNA=001-007-C12;Oryzabase=11382;Expression=AK060314;TENOR=Os01t0776600-03;KEGG=Os01t0776600-03
Chr01	irgsp1_rep	CDS	32850092	32850121	.	-	0	Parent=Os01t0776600-03
Chr01	irgsp1_rep	CDS	32849828	32849966	.	-	0	Parent=Os01t0776600-03
Chr01	irgsp1_rep	CDS	32849363	32849583	.	-	2	Parent=Os01t0776600-03
Chr01	irgsp1_rep	CDS	32848921	32849042	.	-	0	Parent=Os01t0776600-03
Chr01	irgsp1_rep	CDS	32848622	32848820	.	-	1	Parent=Os01t0776600-03
Chr01	irgsp1_rep	three_prime_UTR	32848291	32848621	.	-	.	Parent=Os01t0776600-03
Chr01	irgsp1_rep	mRNA	32855435	32858097	.	-	.	ID=Os01t0776700-01;Name=Os01t0776700-01;Locus_id=Os01g0776700;Note=Similar to predicted protein.;Transcript_evidence=AK243625 (DDBJ%2C Best hit);ORF_evidence=Q8LJ42 (UniProt);NIAS_FLcDNA=J100086L02;TENOR=Os01t0776700-01;KEGG=Os01t0776700-01
Chr01	irgsp1_rep	five_prime_UTR	32858002	32858097	.	-	.	Parent=Os01t0776700-01
Chr01	irgsp1_rep	CDS	32857744	32858001	.	-	0	Parent=Os01t0776700-01
Chr01	irgsp1_rep	CDS	32857559	32857669	.	-	0	Parent=Os01t0776700-01
Chr01	irgsp1_rep	CDS	32856515	32856598	.	-	0	Parent=Os01t0776700-01
Chr01	irgsp1_rep	three_prime_UTR	32855435	32856514	.	-	.	Parent=Os01t0776700-01
Chr01	irgsp1_rep	mRNA	32860954	32863510	.	+	.	ID=Os01t0776800-01;Name=Os01t0776800-01;Locus_id=Os01g0776800;Note=Domain of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK101996 (DDBJ%2C Best hit);ORF_evidence=Q5ZB01 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=J033079J12;Expression=AK101996;TENOR=Os01t0776800-01;KEGG=Os01t0776800-01
Chr01	irgsp1_rep	five_prime_UTR	32860954	32860983	.	+	.	Parent=Os01t0776800-01
Chr01	irgsp1_rep	CDS	32860984	32862358	.	+	0	Parent=Os01t0776800-01
Chr01	irgsp1_rep	CDS	32863117	32863157	.	+	2	Parent=Os01t0776800-01
Chr01	irgsp1_rep	three_prime_UTR	32863158	32863510	.	+	.	Parent=Os01t0776800-01
Chr01	irgsp1_rep	mRNA	32861046	32862600	.	+	.	ID=Os01t0776800-02;Name=Os01t0776800-02;Locus_id=Os01g0776800;Note=Hypothetical conserved gene.;Transcript_evidence=AK070639 (DDBJ%2C Best hit);ORF_evidence=Q5ZB00 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=J023059M03;Expression=AK070639;TENOR=Os01t0776800-02;KEGG=Os01t0776800-02
Chr01	irgsp1_rep	five_prime_UTR	32861046	32861046	.	+	.	Parent=Os01t0776800-02
Chr01	irgsp1_rep	CDS	32861047	32862447	.	+	0	Parent=Os01t0776800-02
Chr01	irgsp1_rep	three_prime_UTR	32862448	32862600	.	+	.	Parent=Os01t0776800-02
Chr01	irgsp1_rep	mRNA	32869293	32874316	.	+	.	ID=Os01t0777000-00;Name=Os01t0777000-00;Locus_id=Os01g0777000;Note=Vacuolar protein sorting-associated protein 51 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001044419.1 (RefSeq);InterPro=Vacuolar protein sorting-associated protein 51 (IPR014812);TENOR=Os01t0777000-00;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	32869293	32871494	.	+	0	Parent=Os01t0777000-00
Chr01	irgsp1_rep	CDS	32872083	32872277	.	+	0	Parent=Os01t0777000-00
Chr01	irgsp1_rep	CDS	32872961	32873265	.	+	0	Parent=Os01t0777000-00
Chr01	irgsp1_rep	CDS	32873406	32873591	.	+	1	Parent=Os01t0777000-00
Chr01	irgsp1_rep	CDS	32873879	32874056	.	+	1	Parent=Os01t0777000-00
Chr01	irgsp1_rep	CDS	32874290	32874316	.	+	0	Parent=Os01t0777000-00
Chr01	irgsp1_rep	mRNA	32877682	32878193	.	+	.	ID=Os01t0777101-00;Name=Os01t0777101-00;Locus_id=Os01g0777101;Note=Hypothetical gene.;Transcript_evidence=CT834969 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os01t0777101-00;KEGG=Os01t0777101-00
Chr01	irgsp1_rep	five_prime_UTR	32877682	32877946	.	+	.	Parent=Os01t0777101-00
Chr01	irgsp1_rep	CDS	32877947	32878162	.	+	0	Parent=Os01t0777101-00
Chr01	irgsp1_rep	three_prime_UTR	32878163	32878193	.	+	.	Parent=Os01t0777101-00
Chr01	irgsp1_rep	mRNA	32886869	32892451	.	+	.	ID=Os01t0777200-01;Name=Os01t0777200-01;Locus_id=Os01g0777200;Note=Peptidase aspartic%2C catalytic domain containing protein.;Transcript_evidence=AK287876 (DDBJ%2C Best hit);ORF_evidence=B6TNP6 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J065205K17;TENOR=Os01t0777200-01;KEGG=Os01t0777200-01
Chr01	irgsp1_rep	five_prime_UTR	32886869	32887109	.	+	.	Parent=Os01t0777200-01
Chr01	irgsp1_rep	CDS	32887110	32887375	.	+	0	Parent=Os01t0777200-01
Chr01	irgsp1_rep	CDS	32889181	32889310	.	+	1	Parent=Os01t0777200-01
Chr01	irgsp1_rep	CDS	32889446	32889699	.	+	0	Parent=Os01t0777200-01
Chr01	irgsp1_rep	CDS	32890367	32890594	.	+	1	Parent=Os01t0777200-01
Chr01	irgsp1_rep	CDS	32890804	32890966	.	+	1	Parent=Os01t0777200-01
Chr01	irgsp1_rep	CDS	32891085	32891158	.	+	0	Parent=Os01t0777200-01
Chr01	irgsp1_rep	CDS	32891247	32891343	.	+	1	Parent=Os01t0777200-01
Chr01	irgsp1_rep	CDS	32891464	32891530	.	+	0	Parent=Os01t0777200-01
Chr01	irgsp1_rep	CDS	32891894	32891965	.	+	2	Parent=Os01t0777200-01
Chr01	irgsp1_rep	CDS	32892092	32892255	.	+	2	Parent=Os01t0777200-01
Chr01	irgsp1_rep	three_prime_UTR	32892256	32892451	.	+	.	Parent=Os01t0777200-01
Chr01	irgsp1_rep	mRNA	32893402	32899783	.	+	.	ID=Os01t0777300-00;Name=Os01t0777300-00;Locus_id=Os01g0777300;Oryzabase Gene Symbol Synonym(s)=OsEXO1%2C OsExo1%2C EXO1;Oryzabase Gene Name Synonym(s)=Exonuclease-1%2C exonuclease 1;Note=DNA repair protein (XPGC)/yeast Rad family protein.;Transcript_evidence=AB179769 (DDBJ%2C Best hit);ORF_evidence=Q60GC1 (UniProt);GO=Biological Process: DNA repair (GO:0006281),Molecular Function: DNA binding (GO:0003677),Molecular Function: catalytic activity (GO:0003824),Molecular Function: nuclease activity (GO:0004518),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=DNA repair protein (XPGC)/yeast Rad (IPR006084),XPG N-terminal (IPR006085),XPG/RAD2 endonuclease (IPR006086),Helix-hairpin-helix motif%2C class 2 (IPR008918),XPG conserved site (IPR019974),5&apos%3B-3&apos%3B exonuclease%2C C-terminal domain (IPR020045);Oryzabase=14345;TENOR=Os01t0777300-00;KEGG=Os01t0777300-00 (EC:3.1.-.-)
Chr01	irgsp1_rep	five_prime_UTR	32893402	32893434	.	+	.	Parent=Os01t0777300-00
Chr01	irgsp1_rep	CDS	32893435	32893595	.	+	0	Parent=Os01t0777300-00
Chr01	irgsp1_rep	CDS	32894331	32894450	.	+	1	Parent=Os01t0777300-00
Chr01	irgsp1_rep	CDS	32894720	32894843	.	+	1	Parent=Os01t0777300-00
Chr01	irgsp1_rep	CDS	32894966	32895103	.	+	0	Parent=Os01t0777300-00
Chr01	irgsp1_rep	CDS	32895234	32895443	.	+	0	Parent=Os01t0777300-00
Chr01	irgsp1_rep	CDS	32895827	32896001	.	+	0	Parent=Os01t0777300-00
Chr01	irgsp1_rep	CDS	32896259	32896332	.	+	2	Parent=Os01t0777300-00
Chr01	irgsp1_rep	CDS	32896779	32896905	.	+	0	Parent=Os01t0777300-00
Chr01	irgsp1_rep	CDS	32897197	32897543	.	+	2	Parent=Os01t0777300-00
Chr01	irgsp1_rep	CDS	32897651	32897705	.	+	0	Parent=Os01t0777300-00
Chr01	irgsp1_rep	CDS	32897829	32898124	.	+	2	Parent=Os01t0777300-00
Chr01	irgsp1_rep	CDS	32898222	32898273	.	+	0	Parent=Os01t0777300-00
Chr01	irgsp1_rep	CDS	32898482	32898689	.	+	2	Parent=Os01t0777300-00
Chr01	irgsp1_rep	CDS	32898806	32899229	.	+	1	Parent=Os01t0777300-00
Chr01	irgsp1_rep	three_prime_UTR	32899230	32899783	.	+	.	Parent=Os01t0777300-00
Chr01	irgsp1_rep	mRNA	32901281	32902616	.	+	.	ID=Os01t0777400-01;Name=Os01t0777400-01;Locus_id=Os01g0777400;Note=Conserved hypothetical protein.;Transcript_evidence=AK066370 (DDBJ%2C Best hit);ORF_evidence=B8AAH9 (UniProt);NIAS_FLcDNA=J013063J21;Expression=AK066370;TENOR=Os01t0777400-01;KEGG=Os01t0777400-01
Chr01	irgsp1_rep	five_prime_UTR	32901281	32902010	.	+	.	Parent=Os01t0777400-01
Chr01	irgsp1_rep	CDS	32902011	32902385	.	+	0	Parent=Os01t0777400-01
Chr01	irgsp1_rep	three_prime_UTR	32902386	32902616	.	+	.	Parent=Os01t0777400-01
Chr01	irgsp1_rep	mRNA	32903356	32905028	.	+	.	ID=Os01t0777450-01;Name=Os01t0777450-01;Locus_id=Os01g0777450;Note=Hypothetical gene.;Transcript_evidence=AK289196 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100045P10;TENOR=Os01t0777450-01;KEGG=Os01t0777450-01
Chr01	irgsp1_rep	five_prime_UTR	32903356	32904172	.	+	.	Parent=Os01t0777450-01
Chr01	irgsp1_rep	CDS	32904173	32904454	.	+	0	Parent=Os01t0777450-01
Chr01	irgsp1_rep	three_prime_UTR	32904455	32905028	.	+	.	Parent=Os01t0777450-01
Chr01	irgsp1_rep	mRNA	32904020	32905293	.	-	.	ID=Os01t0777500-00;Name=Os01t0777500-00;Locus_id=Os01g0777500;Note=Similar to acid phosphatase/ oxidoreductase/ transition metal ion binding.;Transcript_evidence=EU957839 (DDBJ);ORF_evidence=NP_568308.1 (RefSeq);GO=Molecular Function: acid phosphatase activity (GO:0003993);InterPro=Histidine phosphatase superfamily%2C clade-2 (IPR000560);TENOR=Os01t0777500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	32905028	32905293	.	-	0	Parent=Os01t0777500-00
Chr01	irgsp1_rep	CDS	32904898	32904955	.	-	1	Parent=Os01t0777500-00
Chr01	irgsp1_rep	CDS	32904458	32904625	.	-	0	Parent=Os01t0777500-00
Chr01	irgsp1_rep	CDS	32904285	32904363	.	-	0	Parent=Os01t0777500-00
Chr01	irgsp1_rep	CDS	32904149	32904192	.	-	2	Parent=Os01t0777500-00
Chr01	irgsp1_rep	three_prime_UTR	32904020	32904148	.	-	.	Parent=Os01t0777500-00
Chr01	irgsp1_rep	mRNA	32907633	32908968	.	+	.	ID=Os01t0777600-01;Name=Os01t0777600-01;Locus_id=Os01g0777600;Note=Conserved hypothetical protein.;Transcript_evidence=AK066370 (DDBJ%2C Best hit);ORF_evidence=B8AAH9 (UniProt);NIAS_FLcDNA=J013063J21;Expression=AK066370;TENOR=Os01t0777600-01;KEGG=Os01t0777600-01
Chr01	irgsp1_rep	five_prime_UTR	32907633	32908362	.	+	.	Parent=Os01t0777600-01
Chr01	irgsp1_rep	CDS	32908363	32908737	.	+	0	Parent=Os01t0777600-01
Chr01	irgsp1_rep	three_prime_UTR	32908738	32908968	.	+	.	Parent=Os01t0777600-01
Chr01	irgsp1_rep	mRNA	32909708	32911380	.	+	.	ID=Os01t0777650-01;Name=Os01t0777650-01;Locus_id=Os01g0777650;Note=Hypothetical gene.;Transcript_evidence=AK289196 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100045P10;TENOR=Os01t0777650-01;KEGG=Os01t0777650-01
Chr01	irgsp1_rep	five_prime_UTR	32909708	32910524	.	+	.	Parent=Os01t0777650-01
Chr01	irgsp1_rep	CDS	32910525	32910806	.	+	0	Parent=Os01t0777650-01
Chr01	irgsp1_rep	three_prime_UTR	32910807	32911380	.	+	.	Parent=Os01t0777650-01
Chr01	irgsp1_rep	mRNA	32910354	32925363	.	-	.	ID=Os01t0777700-00;Name=Os01t0777700-00;Locus_id=Os01g0777700;Note=Similar to acid phosphatase/ oxidoreductase/ transition metal ion binding.;Transcript_evidence=AK354919 (DDBJ);ORF_evidence=NP_001030614.1 (RefSeq);GO=Molecular Function: acid phosphatase activity (GO:0003993);InterPro=Histidine phosphatase superfamily%2C clade-2 (IPR000560);TENOR=Os01t0777700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	32925335	32925363	.	-	.	Parent=Os01t0777700-00
Chr01	irgsp1_rep	CDS	32925263	32925334	.	-	0	Parent=Os01t0777700-00
Chr01	irgsp1_rep	CDS	32925094	32925153	.	-	0	Parent=Os01t0777700-00
Chr01	irgsp1_rep	CDS	32924285	32924331	.	-	0	Parent=Os01t0777700-00
Chr01	irgsp1_rep	CDS	32923459	32923542	.	-	1	Parent=Os01t0777700-00
Chr01	irgsp1_rep	CDS	32922777	32922840	.	-	1	Parent=Os01t0777700-00
Chr01	irgsp1_rep	CDS	32921685	32921838	.	-	0	Parent=Os01t0777700-00
Chr01	irgsp1_rep	CDS	32920593	32920663	.	-	2	Parent=Os01t0777700-00
Chr01	irgsp1_rep	CDS	32919820	32919924	.	-	0	Parent=Os01t0777700-00
Chr01	irgsp1_rep	CDS	32919363	32919455	.	-	0	Parent=Os01t0777700-00
Chr01	irgsp1_rep	CDS	32919104	32919178	.	-	0	Parent=Os01t0777700-00
Chr01	irgsp1_rep	CDS	32918090	32918184	.	-	0	Parent=Os01t0777700-00
Chr01	irgsp1_rep	CDS	32917765	32917971	.	-	1	Parent=Os01t0777700-00
Chr01	irgsp1_rep	CDS	32917589	32917688	.	-	1	Parent=Os01t0777700-00
Chr01	irgsp1_rep	CDS	32917427	32917497	.	-	0	Parent=Os01t0777700-00
Chr01	irgsp1_rep	CDS	32916945	32917023	.	-	1	Parent=Os01t0777700-00
Chr01	irgsp1_rep	CDS	32916013	32916171	.	-	0	Parent=Os01t0777700-00
Chr01	irgsp1_rep	CDS	32915684	32915726	.	-	0	Parent=Os01t0777700-00
Chr01	irgsp1_rep	CDS	32915002	32915084	.	-	2	Parent=Os01t0777700-00
Chr01	irgsp1_rep	CDS	32914247	32914309	.	-	0	Parent=Os01t0777700-00
Chr01	irgsp1_rep	CDS	32914097	32914171	.	-	0	Parent=Os01t0777700-00
Chr01	irgsp1_rep	CDS	32913879	32913998	.	-	0	Parent=Os01t0777700-00
Chr01	irgsp1_rep	CDS	32913476	32913714	.	-	0	Parent=Os01t0777700-00
Chr01	irgsp1_rep	CDS	32913337	32913381	.	-	1	Parent=Os01t0777700-00
Chr01	irgsp1_rep	CDS	32912598	32912673	.	-	1	Parent=Os01t0777700-00
Chr01	irgsp1_rep	three_prime_UTR	32912594	32912597	.	-	.	Parent=Os01t0777700-00
Chr01	irgsp1_rep	three_prime_UTR	32911887	32911951	.	-	.	Parent=Os01t0777700-00
Chr01	irgsp1_rep	three_prime_UTR	32911380	32911621	.	-	.	Parent=Os01t0777700-00
Chr01	irgsp1_rep	three_prime_UTR	32911250	32911307	.	-	.	Parent=Os01t0777700-00
Chr01	irgsp1_rep	three_prime_UTR	32910810	32910977	.	-	.	Parent=Os01t0777700-00
Chr01	irgsp1_rep	three_prime_UTR	32910641	32910715	.	-	.	Parent=Os01t0777700-00
Chr01	irgsp1_rep	three_prime_UTR	32910354	32910546	.	-	.	Parent=Os01t0777700-00
Chr01	irgsp1_rep	mRNA	32929073	32932792	.	-	.	ID=Os01t0777800-01;Name=Os01t0777800-01;Locus_id=Os01g0777800;Note=Hypothetical conserved gene.;Transcript_evidence=AK241720 (DDBJ%2C Best hit);ORF_evidence=B8AAD7 (UniProt);InterPro=Regulator of Chromosome condensation%2C RCC1 (IPR000408),Regulator of Chromosome condensation/beta-lactamase-inhibitor protein II (IPR009091);NIAS_FLcDNA=J065198B19;TENOR=Os01t0777800-01;KEGG=Os01t0777800-01
Chr01	irgsp1_rep	five_prime_UTR	32932787	32932792	.	-	.	Parent=Os01t0777800-01
Chr01	irgsp1_rep	CDS	32932588	32932786	.	-	0	Parent=Os01t0777800-01
Chr01	irgsp1_rep	CDS	32931639	32931794	.	-	2	Parent=Os01t0777800-01
Chr01	irgsp1_rep	CDS	32931295	32931453	.	-	2	Parent=Os01t0777800-01
Chr01	irgsp1_rep	CDS	32930327	32930485	.	-	2	Parent=Os01t0777800-01
Chr01	irgsp1_rep	CDS	32930113	32930244	.	-	2	Parent=Os01t0777800-01
Chr01	irgsp1_rep	CDS	32929915	32930028	.	-	2	Parent=Os01t0777800-01
Chr01	irgsp1_rep	CDS	32929467	32929565	.	-	2	Parent=Os01t0777800-01
Chr01	irgsp1_rep	CDS	32929201	32929388	.	-	2	Parent=Os01t0777800-01
Chr01	irgsp1_rep	three_prime_UTR	32929073	32929200	.	-	.	Parent=Os01t0777800-01
Chr01	irgsp1_rep	mRNA	32934209	32934997	.	+	.	ID=Os01t0777900-01;Name=Os01t0777900-01;Locus_id=Os01g0777900;Note=Non-protein coding transcript.;Transcript_evidence=AK107899 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-134-F06;TENOR=Os01t0777900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	exon	32934209	32934330	.	+	.	Parent=Os01t0777900-01
Chr01	irgsp1_rep	exon	32934431	32934518	.	+	.	Parent=Os01t0777900-01
Chr01	irgsp1_rep	exon	32934624	32934997	.	+	.	Parent=Os01t0777900-01
Chr01	irgsp1_rep	mRNA	32940137	32942493	.	+	.	ID=Os01t0778100-01;Name=Os01t0778100-01;Locus_id=Os01g0778100;Oryzabase Gene Symbol Synonym(s)=OsDSR1;Oryzabase Gene Name Synonym(s)=DUF966-stress repressive gene 1;Note=Hypothetical conserved gene.;Transcript_evidence=AK241481 (DDBJ%2C Best hit);ORF_evidence=B9ETB3 (UniProt);InterPro=Protein of unknown function DUF966 (IPR010369);NIAS_FLcDNA=J065166E16;Oryzabase=15438;TENOR=Os01t0778100-01;KEGG=Os01t0778100-01
Chr01	irgsp1_rep	CDS	32940137	32940257	.	+	0	Parent=Os01t0778100-01
Chr01	irgsp1_rep	CDS	32940370	32940439	.	+	2	Parent=Os01t0778100-01
Chr01	irgsp1_rep	CDS	32940635	32940777	.	+	1	Parent=Os01t0778100-01
Chr01	irgsp1_rep	CDS	32940869	32941379	.	+	2	Parent=Os01t0778100-01
Chr01	irgsp1_rep	CDS	32941453	32941554	.	+	1	Parent=Os01t0778100-01
Chr01	irgsp1_rep	CDS	32941996	32942236	.	+	1	Parent=Os01t0778100-01
Chr01	irgsp1_rep	three_prime_UTR	32942237	32942493	.	+	.	Parent=Os01t0778100-01
Chr01	irgsp1_rep	mRNA	32946648	32946942	.	-	.	ID=Os01t0778400-00;Name=Os01t0778400-00;Locus_id=Os01g0778400;CGSNL Gene Symbol=AGP19;CGSNL Gene Name=ARABINOGALACTAN PROTEIN 19;Oryzabase Gene Symbol Synonym(s)=OsAGP19%2C OsAGPEP1;Oryzabase Gene Name Synonym(s)=Arabinogalactan protein 19%2C arabinogalactan peptide 1;Note=Hypothetical protein.;Transcript_evidence=EU974658 (DDBJ);ORF_evidence=GeneMark;Oryzabase=11312;TENOR=Os01t0778400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	32946941	32946942	.	-	.	Parent=Os01t0778400-00
Chr01	irgsp1_rep	CDS	32946648	32946940	.	-	0	Parent=Os01t0778400-00
Chr01	irgsp1_rep	mRNA	32947996	32948879	.	-	.	ID=Os01t0778500-01;Name=Os01t0778500-01;Locus_id=Os01g0778500;Note=Similar to predicted protein.;Transcript_evidence=AK240963 (DDBJ%2C Best hit);ORF_evidence=NP_001172590.1 (RefSeq);NIAS_FLcDNA=J065046B15;TENOR=Os01t0778500-01;KEGG=Os01t0778500-01
Chr01	irgsp1_rep	five_prime_UTR	32948871	32948879	.	-	.	Parent=Os01t0778500-01
Chr01	irgsp1_rep	CDS	32948669	32948870	.	-	0	Parent=Os01t0778500-01
Chr01	irgsp1_rep	CDS	32948407	32948561	.	-	2	Parent=Os01t0778500-01
Chr01	irgsp1_rep	three_prime_UTR	32947996	32948406	.	-	.	Parent=Os01t0778500-01
Chr01	irgsp1_rep	mRNA	32956995	32963290	.	+	.	ID=Os01t0778700-01;Name=Os01t0778700-01;Locus_id=Os01g0778700;Note=Similar to Transmembrane protein 49.;Transcript_evidence=AK064933 (DDBJ%2C Best hit);ORF_evidence=B6TDW5 (UniProt);InterPro=SNARE associated Golgi protein (IPR015414);NIAS_FLcDNA=J013000O19;Expression=AK064933;TENOR=Os01t0778700-01;KEGG=Os01t0778700-01
Chr01	irgsp1_rep	five_prime_UTR	32956995	32957316	.	+	.	Parent=Os01t0778700-01
Chr01	irgsp1_rep	CDS	32957317	32957398	.	+	0	Parent=Os01t0778700-01
Chr01	irgsp1_rep	CDS	32958803	32959014	.	+	2	Parent=Os01t0778700-01
Chr01	irgsp1_rep	CDS	32959150	32959226	.	+	0	Parent=Os01t0778700-01
Chr01	irgsp1_rep	CDS	32959999	32960303	.	+	1	Parent=Os01t0778700-01
Chr01	irgsp1_rep	CDS	32960887	32961044	.	+	2	Parent=Os01t0778700-01
Chr01	irgsp1_rep	CDS	32961591	32961707	.	+	0	Parent=Os01t0778700-01
Chr01	irgsp1_rep	CDS	32962304	32962489	.	+	0	Parent=Os01t0778700-01
Chr01	irgsp1_rep	CDS	32962614	32962793	.	+	0	Parent=Os01t0778700-01
Chr01	irgsp1_rep	three_prime_UTR	32962794	32963290	.	+	.	Parent=Os01t0778700-01
Chr01	irgsp1_rep	mRNA	32965371	32976817	.	+	.	ID=Os01t0778800-01;Name=Os01t0778800-01;Locus_id=Os01g0778800;Note=Peptidase M16%2C core domain containing protein.;Transcript_evidence=AK100383 (DDBJ%2C Best hit);ORF_evidence=NP_181710.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: catalytic activity (GO:0003824),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: metal ion binding (GO:0046872);InterPro=Peptidase M16%2C zinc-binding site (IPR001431),Peptidase M16%2C C-terminal (IPR007863),Peptidase M16%2C core (IPR011237),Metalloenzyme%2C LuxS/M16 peptidase-like%2C metal-binding (IPR011249),Peptidase M16%2C N-terminal (IPR011765);NIAS_FLcDNA=J023085G23;Expression=AK100383;TENOR=Os01t0778800-01;KEGG=Os01t0778800-01 (EC:3.4.24.56)
Chr01	irgsp1_rep	five_prime_UTR	32965371	32965490	.	+	.	Parent=Os01t0778800-01
Chr01	irgsp1_rep	CDS	32965491	32965631	.	+	0	Parent=Os01t0778800-01
Chr01	irgsp1_rep	CDS	32965766	32965841	.	+	0	Parent=Os01t0778800-01
Chr01	irgsp1_rep	CDS	32967395	32967462	.	+	2	Parent=Os01t0778800-01
Chr01	irgsp1_rep	CDS	32968012	32968103	.	+	0	Parent=Os01t0778800-01
Chr01	irgsp1_rep	CDS	32968247	32968320	.	+	1	Parent=Os01t0778800-01
Chr01	irgsp1_rep	CDS	32968519	32968562	.	+	2	Parent=Os01t0778800-01
Chr01	irgsp1_rep	CDS	32968897	32968948	.	+	0	Parent=Os01t0778800-01
Chr01	irgsp1_rep	CDS	32969327	32969446	.	+	2	Parent=Os01t0778800-01
Chr01	irgsp1_rep	CDS	32969519	32969631	.	+	2	Parent=Os01t0778800-01
Chr01	irgsp1_rep	CDS	32969765	32969924	.	+	0	Parent=Os01t0778800-01
Chr01	irgsp1_rep	CDS	32970040	32970135	.	+	2	Parent=Os01t0778800-01
Chr01	irgsp1_rep	CDS	32970234	32970319	.	+	2	Parent=Os01t0778800-01
Chr01	irgsp1_rep	CDS	32970914	32971000	.	+	0	Parent=Os01t0778800-01
Chr01	irgsp1_rep	CDS	32971233	32971336	.	+	0	Parent=Os01t0778800-01
Chr01	irgsp1_rep	CDS	32971738	32971840	.	+	1	Parent=Os01t0778800-01
Chr01	irgsp1_rep	CDS	32971992	32972087	.	+	0	Parent=Os01t0778800-01
Chr01	irgsp1_rep	CDS	32972198	32972387	.	+	0	Parent=Os01t0778800-01
Chr01	irgsp1_rep	CDS	32972519	32972580	.	+	2	Parent=Os01t0778800-01
Chr01	irgsp1_rep	CDS	32972756	32972860	.	+	0	Parent=Os01t0778800-01
Chr01	irgsp1_rep	CDS	32973524	32973725	.	+	0	Parent=Os01t0778800-01
Chr01	irgsp1_rep	CDS	32973834	32974042	.	+	2	Parent=Os01t0778800-01
Chr01	irgsp1_rep	CDS	32975291	32975415	.	+	0	Parent=Os01t0778800-01
Chr01	irgsp1_rep	CDS	32975541	32975592	.	+	1	Parent=Os01t0778800-01
Chr01	irgsp1_rep	CDS	32975677	32975763	.	+	0	Parent=Os01t0778800-01
Chr01	irgsp1_rep	CDS	32976061	32976183	.	+	0	Parent=Os01t0778800-01
Chr01	irgsp1_rep	CDS	32976348	32976602	.	+	0	Parent=Os01t0778800-01
Chr01	irgsp1_rep	three_prime_UTR	32976603	32976817	.	+	.	Parent=Os01t0778800-01
Chr01	irgsp1_rep	mRNA	32976736	32977251	.	-	.	ID=Os01t0778900-01;Name=Os01t0778900-01;Locus_id=Os01g0778900;Note=Similar to serine-rich protein-related.;Transcript_evidence=AK107825 (DDBJ%2C Best hit);ORF_evidence=NP_683560.1 (RefSeq);NIAS_FLcDNA=002-133-G06;Expression=AK107825;TENOR=Os01t0778900-01;KEGG=Os01t0778900-01
Chr01	irgsp1_rep	five_prime_UTR	32977225	32977251	.	-	.	Parent=Os01t0778900-01
Chr01	irgsp1_rep	CDS	32976985	32977224	.	-	0	Parent=Os01t0778900-01
Chr01	irgsp1_rep	three_prime_UTR	32976736	32976984	.	-	.	Parent=Os01t0778900-01
Chr01	irgsp1_rep	mRNA	32985048	32994371	.	+	.	ID=Os01t0779100-00;Name=Os01t0779100-00;Locus_id=Os01g0779100;Note=Peptidase M16%2C zinc-binding site domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5ZCF0 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: catalytic activity (GO:0003824),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: metal ion binding (GO:0046872);InterPro=Peptidase M16%2C zinc-binding site (IPR001431),Peptidase M16%2C C-terminal (IPR007863),Peptidase M16%2C core (IPR011237),Metalloenzyme%2C LuxS/M16 peptidase-like%2C metal-binding (IPR011249),Peptidase M16%2C N-terminal (IPR011765);TENOR=Os01t0779100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	32985048	32985176	.	+	0	Parent=Os01t0779100-00
Chr01	irgsp1_rep	CDS	32985312	32985387	.	+	0	Parent=Os01t0779100-00
Chr01	irgsp1_rep	CDS	32986066	32986133	.	+	2	Parent=Os01t0779100-00
Chr01	irgsp1_rep	CDS	32986610	32986701	.	+	0	Parent=Os01t0779100-00
Chr01	irgsp1_rep	CDS	32986863	32986936	.	+	1	Parent=Os01t0779100-00
Chr01	irgsp1_rep	CDS	32987942	32988061	.	+	2	Parent=Os01t0779100-00
Chr01	irgsp1_rep	CDS	32988133	32988245	.	+	2	Parent=Os01t0779100-00
Chr01	irgsp1_rep	CDS	32988416	32988582	.	+	0	Parent=Os01t0779100-00
Chr01	irgsp1_rep	CDS	32988857	32988971	.	+	1	Parent=Os01t0779100-00
Chr01	irgsp1_rep	CDS	32989574	32989660	.	+	0	Parent=Os01t0779100-00
Chr01	irgsp1_rep	CDS	32989891	32989994	.	+	0	Parent=Os01t0779100-00
Chr01	irgsp1_rep	CDS	32990349	32990451	.	+	1	Parent=Os01t0779100-00
Chr01	irgsp1_rep	CDS	32990603	32990698	.	+	0	Parent=Os01t0779100-00
Chr01	irgsp1_rep	CDS	32990809	32990889	.	+	0	Parent=Os01t0779100-00
Chr01	irgsp1_rep	CDS	32991302	32991406	.	+	0	Parent=Os01t0779100-00
Chr01	irgsp1_rep	CDS	32991905	32992106	.	+	0	Parent=Os01t0779100-00
Chr01	irgsp1_rep	CDS	32992215	32992423	.	+	2	Parent=Os01t0779100-00
Chr01	irgsp1_rep	CDS	32993155	32993279	.	+	0	Parent=Os01t0779100-00
Chr01	irgsp1_rep	CDS	32993386	32993437	.	+	1	Parent=Os01t0779100-00
Chr01	irgsp1_rep	CDS	32993514	32993600	.	+	0	Parent=Os01t0779100-00
Chr01	irgsp1_rep	CDS	32993867	32993989	.	+	0	Parent=Os01t0779100-00
Chr01	irgsp1_rep	CDS	32994117	32994371	.	+	0	Parent=Os01t0779100-00
Chr01	irgsp1_rep	mRNA	32994691	32994921	.	-	.	ID=Os01t0779201-00;Name=Os01t0779201-00;Locus_id=Os01g0779201;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5ZCE9 (UniProt);TENOR=Os01t0779201-00;KEGG=Os01t0779201-00
Chr01	irgsp1_rep	CDS	32994691	32994921	.	-	0	Parent=Os01t0779201-00
Chr01	irgsp1_rep	mRNA	32996762	32999176	.	+	.	ID=Os01t0779300-01;Name=Os01t0779300-01;Locus_id=Os01g0779300;Note=Concanavalin A-like lectin/glucanase%2C subgroup domain containing protein.;Transcript_evidence=AK121676 (DDBJ%2C Best hit);ORF_evidence=NP_001147903.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Legume lectin%2C beta chain%2C Mn/Ca-binding site (IPR019825);NIAS_FLcDNA=J033068N04;Expression=AK121676;TENOR=Os01t0779300-01;KEGG=Os01t0779300-01
Chr01	irgsp1_rep	five_prime_UTR	32996762	32996847	.	+	.	Parent=Os01t0779300-01
Chr01	irgsp1_rep	CDS	32996848	32998938	.	+	0	Parent=Os01t0779300-01
Chr01	irgsp1_rep	three_prime_UTR	32998939	32999176	.	+	.	Parent=Os01t0779300-01
Chr01	irgsp1_rep	mRNA	33000078	33010221	.	-	.	ID=Os01t0779400-01;Name=Os01t0779400-01;Locus_id=Os01g0779400;CGSNL Gene Symbol=DLN22;CGSNL Gene Name=DLN REPRESSOR 22;Oryzabase Gene Symbol Synonym(s)=OsDLN22;Oryzabase Gene Name Synonym(s)=DLN repressor 22%2C DLN motif protein 22;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK072094 (DDBJ%2C Best hit);ORF_evidence=XP_002317230.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: helicase activity (GO:0004386),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: zinc ion binding (GO:0008270);InterPro=SNF2-related (IPR000330),Helicase%2C C-terminal (IPR001650),Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),DEAD-like helicase (IPR014001),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J013116F16;Oryzabase=23158;Expression=AK072094;TENOR=Os01t0779400-01;KEGG=Os01t0779400-01
Chr01	irgsp1_rep	five_prime_UTR	33010021	33010221	.	-	.	Parent=Os01t0779400-01
Chr01	irgsp1_rep	CDS	33009886	33010020	.	-	0	Parent=Os01t0779400-01
Chr01	irgsp1_rep	CDS	33007736	33007802	.	-	0	Parent=Os01t0779400-01
Chr01	irgsp1_rep	CDS	33007493	33007591	.	-	2	Parent=Os01t0779400-01
Chr01	irgsp1_rep	CDS	33007273	33007401	.	-	2	Parent=Os01t0779400-01
Chr01	irgsp1_rep	CDS	33006155	33007095	.	-	2	Parent=Os01t0779400-01
Chr01	irgsp1_rep	CDS	33005354	33005425	.	-	0	Parent=Os01t0779400-01
Chr01	irgsp1_rep	CDS	33005195	33005272	.	-	0	Parent=Os01t0779400-01
Chr01	irgsp1_rep	CDS	33004198	33005095	.	-	0	Parent=Os01t0779400-01
Chr01	irgsp1_rep	CDS	33003123	33003253	.	-	2	Parent=Os01t0779400-01
Chr01	irgsp1_rep	CDS	33002447	33002668	.	-	0	Parent=Os01t0779400-01
Chr01	irgsp1_rep	CDS	33001408	33001962	.	-	0	Parent=Os01t0779400-01
Chr01	irgsp1_rep	CDS	33001125	33001334	.	-	0	Parent=Os01t0779400-01
Chr01	irgsp1_rep	CDS	33000494	33000598	.	-	0	Parent=Os01t0779400-01
Chr01	irgsp1_rep	three_prime_UTR	33000078	33000493	.	-	.	Parent=Os01t0779400-01
Chr01	irgsp1_rep	mRNA	33000078	33010217	.	-	.	ID=Os01t0779400-02;Name=Os01t0779400-02;Locus_id=Os01g0779400;CGSNL Gene Symbol=DLN22;CGSNL Gene Name=DLN REPRESSOR 22;Oryzabase Gene Symbol Synonym(s)=OsDLN22;Oryzabase Gene Name Synonym(s)=DLN repressor 22%2C DLN motif protein 22;Note=Similar to Chromatin remodeling complex subunit.;Transcript_evidence=AK072085 (DDBJ%2C Best hit);ORF_evidence=XP_002317230.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: helicase activity (GO:0004386),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: zinc ion binding (GO:0008270);InterPro=SNF2-related (IPR000330),Helicase%2C C-terminal (IPR001650),Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),DEAD-like helicase (IPR014001),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J013119B08;Oryzabase=23158;Expression=AK072085;TENOR=Os01t0779400-02;KEGG=Os01t0779400-02
Chr01	irgsp1_rep	five_prime_UTR	33010021	33010217	.	-	.	Parent=Os01t0779400-02
Chr01	irgsp1_rep	CDS	33009886	33010020	.	-	0	Parent=Os01t0779400-02
Chr01	irgsp1_rep	CDS	33007736	33007802	.	-	0	Parent=Os01t0779400-02
Chr01	irgsp1_rep	CDS	33007493	33007636	.	-	2	Parent=Os01t0779400-02
Chr01	irgsp1_rep	CDS	33007273	33007401	.	-	2	Parent=Os01t0779400-02
Chr01	irgsp1_rep	CDS	33006155	33007095	.	-	2	Parent=Os01t0779400-02
Chr01	irgsp1_rep	CDS	33005354	33005425	.	-	0	Parent=Os01t0779400-02
Chr01	irgsp1_rep	CDS	33005195	33005272	.	-	0	Parent=Os01t0779400-02
Chr01	irgsp1_rep	CDS	33004198	33005095	.	-	0	Parent=Os01t0779400-02
Chr01	irgsp1_rep	CDS	33003123	33003253	.	-	2	Parent=Os01t0779400-02
Chr01	irgsp1_rep	CDS	33002447	33002668	.	-	0	Parent=Os01t0779400-02
Chr01	irgsp1_rep	CDS	33001408	33001962	.	-	0	Parent=Os01t0779400-02
Chr01	irgsp1_rep	CDS	33001125	33001334	.	-	0	Parent=Os01t0779400-02
Chr01	irgsp1_rep	CDS	33000494	33000598	.	-	0	Parent=Os01t0779400-02
Chr01	irgsp1_rep	three_prime_UTR	33000078	33000493	.	-	.	Parent=Os01t0779400-02
Chr01	irgsp1_rep	mRNA	33029111	33030489	.	-	.	ID=Os01t0779800-01;Name=Os01t0779800-01;Locus_id=Os01g0779800;Note=Similar to SR protein related family member.;Transcript_evidence=AK119965 (DDBJ%2C Best hit);ORF_evidence=NP_001151653.1 (RefSeq);NIAS_FLcDNA=002-184-D08;Expression=AK119965;TENOR=Os01t0779800-01;KEGG=Os01t0779800-01
Chr01	irgsp1_rep	five_prime_UTR	33030288	33030489	.	-	.	Parent=Os01t0779800-01
Chr01	irgsp1_rep	CDS	33029451	33030287	.	-	0	Parent=Os01t0779800-01
Chr01	irgsp1_rep	three_prime_UTR	33029111	33029450	.	-	.	Parent=Os01t0779800-01
Chr01	irgsp1_rep	mRNA	33050848	33058490	.	+	.	ID=Os01t0780400-02;Name=Os01t0780400-02;Locus_id=Os01g0780400;RAP-DB Gene Symbol Synonym(s)=OsKTN80c;RAP-DB Gene Name Synonym(s)=katanin P80c;Oryzabase Gene Symbol Synonym(s)=OsWD40-26%2C OsKTN80c;Oryzabase Gene Name Synonym(s)=katanin P80c%2C Katanin regulatory subunit P80c;Note=Katanin P80 ortholog%2C Katanin regulatory subunit P80c;Transcript_evidence=AK100949;ORF_evidence=Q5ZCG1;GO=Biological Process: microtubule severing (GO:0051013),Molecular Function: protein binding (GO:0005515),Molecular Function: microtubule binding (GO:0008017),Cellular Component: katanin complex (GO:0008352);InterPro=WD40/YVTN repeat-like-containing domain superfamily (IPR015943),WD40-repeat-containing domain superfamily (IPR036322),Katanin p80 subunit B1 (IPR026962),WD40-repeat-containing domain (IPR017986),Katanin p80 subunit%2C C-terminal (IPR028021),WD40 repeat (IPR001680),G-protein beta WD-40 repeat (IPR020472),WD40 repeat%2C conserved site (IPR019775);NIAS_FLcDNA=J023139I08;Manual Curation=January 18%2C 2018;Literature_PMID=24450597;Oryzabase=10707;Expression=AK100949;TENOR=Os01t0780400-02
Chr01	irgsp1_rep	five_prime_UTR	33050848	33051024	.	+	.	Parent=Os01t0780400-02
Chr01	irgsp1_rep	CDS	33051025	33051055	.	+	0	Parent=Os01t0780400-02
Chr01	irgsp1_rep	CDS	33051649	33051779	.	+	2	Parent=Os01t0780400-02
Chr01	irgsp1_rep	CDS	33051867	33051984	.	+	0	Parent=Os01t0780400-02
Chr01	irgsp1_rep	CDS	33052951	33053280	.	+	2	Parent=Os01t0780400-02
Chr01	irgsp1_rep	CDS	33053548	33053618	.	+	2	Parent=Os01t0780400-02
Chr01	irgsp1_rep	CDS	33054025	33054099	.	+	0	Parent=Os01t0780400-02
Chr01	irgsp1_rep	CDS	33054177	33054320	.	+	0	Parent=Os01t0780400-02
Chr01	irgsp1_rep	CDS	33054387	33054558	.	+	0	Parent=Os01t0780400-02
Chr01	irgsp1_rep	CDS	33054678	33055358	.	+	2	Parent=Os01t0780400-02
Chr01	irgsp1_rep	CDS	33055453	33055509	.	+	2	Parent=Os01t0780400-02
Chr01	irgsp1_rep	CDS	33055592	33055728	.	+	2	Parent=Os01t0780400-02
Chr01	irgsp1_rep	CDS	33056227	33056352	.	+	0	Parent=Os01t0780400-02
Chr01	irgsp1_rep	CDS	33056963	33057037	.	+	0	Parent=Os01t0780400-02
Chr01	irgsp1_rep	CDS	33057129	33057241	.	+	0	Parent=Os01t0780400-02
Chr01	irgsp1_rep	CDS	33057531	33057647	.	+	1	Parent=Os01t0780400-02
Chr01	irgsp1_rep	CDS	33057871	33057939	.	+	1	Parent=Os01t0780400-02
Chr01	irgsp1_rep	CDS	33058126	33058195	.	+	1	Parent=Os01t0780400-02
Chr01	irgsp1_rep	three_prime_UTR	33058196	33058490	.	+	.	Parent=Os01t0780400-02
Chr01	irgsp1_rep	mRNA	33059198	33064709	.	+	.	ID=Os01t0780500-01;Name=Os01t0780500-01;Locus_id=Os01g0780500;Note=SCAMP family protein.;Transcript_evidence=AK068498 (DDBJ%2C Best hit);ORF_evidence=Q7F613 (UniProt);GO=Biological Process: protein transport (GO:0015031),Cellular Component: integral to membrane (GO:0016021);InterPro=SCAMP (IPR007273);NIAS_FLcDNA=J013157H06;Expression=AK068498;TENOR=Os01t0780500-01;KEGG=Os01t0780500-01
Chr01	irgsp1_rep	five_prime_UTR	33059198	33059351	.	+	.	Parent=Os01t0780500-01
Chr01	irgsp1_rep	CDS	33059352	33059408	.	+	0	Parent=Os01t0780500-01
Chr01	irgsp1_rep	CDS	33060267	33060377	.	+	0	Parent=Os01t0780500-01
Chr01	irgsp1_rep	CDS	33060688	33060750	.	+	0	Parent=Os01t0780500-01
Chr01	irgsp1_rep	CDS	33061431	33061464	.	+	0	Parent=Os01t0780500-01
Chr01	irgsp1_rep	CDS	33061995	33062117	.	+	2	Parent=Os01t0780500-01
Chr01	irgsp1_rep	CDS	33062713	33062775	.	+	2	Parent=Os01t0780500-01
Chr01	irgsp1_rep	CDS	33062872	33062965	.	+	2	Parent=Os01t0780500-01
Chr01	irgsp1_rep	CDS	33063053	33063098	.	+	1	Parent=Os01t0780500-01
Chr01	irgsp1_rep	CDS	33063227	33063294	.	+	0	Parent=Os01t0780500-01
Chr01	irgsp1_rep	CDS	33063665	33063713	.	+	1	Parent=Os01t0780500-01
Chr01	irgsp1_rep	CDS	33063950	33064015	.	+	0	Parent=Os01t0780500-01
Chr01	irgsp1_rep	CDS	33064286	33064372	.	+	0	Parent=Os01t0780500-01
Chr01	irgsp1_rep	three_prime_UTR	33064373	33064709	.	+	.	Parent=Os01t0780500-01
Chr01	irgsp1_rep	mRNA	33064726	33067834	.	-	.	ID=Os01t0780600-01;Name=Os01t0780600-01;Locus_id=Os01g0780600;Note=Similar to Transposon protein Mutator sub-class.;Transcript_evidence=AK120823 (DDBJ%2C Best hit);ORF_evidence=B6U264 (UniProt);GO=Biological Process: response to light stimulus (GO:0009416),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),NPH3 (IPR004249),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069);NIAS_FLcDNA=J023019D06;TENOR=Os01t0780600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	33067719	33067834	.	-	.	Parent=Os01t0780600-01
Chr01	irgsp1_rep	CDS	33067660	33067718	.	-	0	Parent=Os01t0780600-01
Chr01	irgsp1_rep	CDS	33066976	33067045	.	-	1	Parent=Os01t0780600-01
Chr01	irgsp1_rep	CDS	33065540	33066886	.	-	0	Parent=Os01t0780600-01
Chr01	irgsp1_rep	CDS	33064936	33065439	.	-	0	Parent=Os01t0780600-01
Chr01	irgsp1_rep	three_prime_UTR	33064726	33064935	.	-	.	Parent=Os01t0780600-01
Chr01	irgsp1_rep	mRNA	33065108	33066774	.	+	.	ID=Os01t0780701-00;Name=Os01t0780701-00;Locus_id=Os01g0780701;Note=Hypothetical gene.;Transcript_evidence=BT060652 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0780701-00;KEGG=Os01t0780701-00
Chr01	irgsp1_rep	five_prime_UTR	33065108	33065725	.	+	.	Parent=Os01t0780701-00
Chr01	irgsp1_rep	CDS	33065726	33066127	.	+	0	Parent=Os01t0780701-00
Chr01	irgsp1_rep	CDS	33066321	33066401	.	+	0	Parent=Os01t0780701-00
Chr01	irgsp1_rep	three_prime_UTR	33066402	33066774	.	+	.	Parent=Os01t0780701-00
Chr01	irgsp1_rep	mRNA	33073583	33078968	.	-	.	ID=Os01t0780800-01;Name=Os01t0780800-01;Locus_id=Os01g0780800;RAP-DB Gene Symbol Synonym(s)=OsULT1;RAP-DB Gene Name Synonym(s)=ULTRAPETALA 1;Oryzabase Gene Symbol Synonym(s)=OsULT1;Oryzabase Gene Name Synonym(s)=ULTRAPETALA1%2C ULTRAPETALA 1;Note=SAND domain-containing protein%2C Trithorax group factor%2C Transcriptional regulation of stress responsive genes;Transcript_evidence=AK064375;ORF_evidence=Q5ZAW0;GO=Molecular Function: DNA binding (GO:0003677);InterPro=SAND domain (IPR000770);NIAS_FLcDNA=002-108-D06;Manual Curation=June 9%2C 2020;Literature_PMID=30753903,25925167;Oryzabase=19582;Expression=AK064375;TENOR=Os01t0780800-01;KEGG=Os01t0780800-01
Chr01	irgsp1_rep	five_prime_UTR	33078138	33078968	.	-	.	Parent=Os01t0780800-01
Chr01	irgsp1_rep	CDS	33077930	33078137	.	-	0	Parent=Os01t0780800-01
Chr01	irgsp1_rep	CDS	33075935	33076259	.	-	2	Parent=Os01t0780800-01
Chr01	irgsp1_rep	CDS	33073848	33074022	.	-	1	Parent=Os01t0780800-01
Chr01	irgsp1_rep	three_prime_UTR	33073583	33073847	.	-	.	Parent=Os01t0780800-01
Chr01	irgsp1_rep	mRNA	33077475	33078862	.	-	.	ID=Os01t0780800-02;Name=Os01t0780800-02;Locus_id=Os01g0780800;Oryzabase Gene Symbol Synonym(s)=OsULT1;Oryzabase Gene Name Synonym(s)=ULTRAPETALA1%2C ULTRAPETALA 1;Note=Similar to predicted protein.;Transcript_evidence=AK108614 (DDBJ%2C Best hit);ORF_evidence=B6TJ26 (UniProt);InterPro=Developmental regulator%2C ULTRAPETALA (IPR020533);NIAS_FLcDNA=002-147-B01;Oryzabase=19582;Expression=AK108614;TENOR=Os01t0780800-02;KEGG=Os01t0780800-02
Chr01	irgsp1_rep	five_prime_UTR	33078138	33078862	.	-	.	Parent=Os01t0780800-02
Chr01	irgsp1_rep	CDS	33077853	33078137	.	-	0	Parent=Os01t0780800-02
Chr01	irgsp1_rep	three_prime_UTR	33077475	33077852	.	-	.	Parent=Os01t0780800-02
Chr01	irgsp1_rep	mRNA	33082114	33083394	.	+	.	ID=Os01t0780900-01;Name=Os01t0780900-01;Locus_id=Os01g0780900;Oryzabase Gene Name Synonym(s)=glycine-rich cell wall protein;Note=Hypothetical conserved gene.;Transcript_evidence=AK242437 (DDBJ%2C Best hit);ORF_evidence=NP_001044440.2 (RefSeq);InterPro=Protein of unknown function DUF3778 (IPR022256);NIAS_FLcDNA=J080093M08;Oryzabase=22724;TENOR=Os01t0780900-01;KEGG=Os01t0780900-01
Chr01	irgsp1_rep	five_prime_UTR	33082114	33082360	.	+	.	Parent=Os01t0780900-01
Chr01	irgsp1_rep	CDS	33082361	33082403	.	+	0	Parent=Os01t0780900-01
Chr01	irgsp1_rep	CDS	33082705	33083360	.	+	2	Parent=Os01t0780900-01
Chr01	irgsp1_rep	three_prime_UTR	33083361	33083394	.	+	.	Parent=Os01t0780900-01
Chr01	irgsp1_rep	mRNA	33082138	33083394	.	+	.	ID=Os01t0780900-02;Name=Os01t0780900-02;Locus_id=Os01g0780900;Oryzabase Gene Name Synonym(s)=glycine-rich cell wall protein;Note=Protein of unknown function DUF3778 domain containing protein.;Transcript_evidence=AK288126 (DDBJ%2C Best hit);ORF_evidence=NP_001044440.2 (RefSeq);InterPro=Protein of unknown function DUF3778 (IPR022256);NIAS_FLcDNA=J080092F15;Oryzabase=22724;TENOR=Os01t0780900-02;KEGG=Os01t0780900-02
Chr01	irgsp1_rep	five_prime_UTR	33082138	33082310	.	+	.	Parent=Os01t0780900-02
Chr01	irgsp1_rep	CDS	33082311	33083360	.	+	0	Parent=Os01t0780900-02
Chr01	irgsp1_rep	three_prime_UTR	33083361	33083394	.	+	.	Parent=Os01t0780900-02
Chr01	irgsp1_rep	mRNA	33089210	33090179	.	+	.	ID=Os01t0781000-01;Name=Os01t0781000-01;Locus_id=Os01g0781000;Note=Vacuolar protein sorting-associated%2C VPS28 family protein.;Transcript_evidence=AK059870 (DDBJ%2C Best hit);ORF_evidence=NP_001151009.1 (RefSeq);InterPro=Vacuolar protein sorting-associated%2C VPS28 (IPR007143),Vacuolar protein sorting-associated%2C VPS28%2C N-terminal (IPR017898),Vacuolar protein sorting-associated%2C VPS28%2C C-terminal (IPR017899);NIAS_FLcDNA=006-207-E10;Expression=AK059870;TENOR=Os01t0781000-01;KEGG=Os01t0781000-01
Chr01	irgsp1_rep	five_prime_UTR	33089210	33089386	.	+	.	Parent=Os01t0781000-01
Chr01	irgsp1_rep	CDS	33089387	33090028	.	+	0	Parent=Os01t0781000-01
Chr01	irgsp1_rep	three_prime_UTR	33090029	33090179	.	+	.	Parent=Os01t0781000-01
Chr01	irgsp1_rep	mRNA	33089273	33090179	.	+	.	ID=Os01t0781000-02;Name=Os01t0781000-02;Locus_id=Os01g0781000;Note=Vacuolar protein sorting-associated%2C VPS28 family protein.;Transcript_evidence=AK099116 (DDBJ%2C Best hit),AK104274 (DDBJ%2C Best hit);ORF_evidence=NP_001151009.1 (RefSeq);InterPro=Vacuolar protein sorting-associated%2C VPS28 (IPR007143),Vacuolar protein sorting-associated%2C VPS28%2C N-terminal (IPR017898),Vacuolar protein sorting-associated%2C VPS28%2C C-terminal (IPR017899);NIAS_FLcDNA=J023034E12,001-001-G12;TENOR=Os01t0781000-02
Chr01	irgsp1_rep	five_prime_UTR	33089273	33089386	.	+	.	Parent=Os01t0781000-02
Chr01	irgsp1_rep	CDS	33089387	33090028	.	+	0	Parent=Os01t0781000-02
Chr01	irgsp1_rep	three_prime_UTR	33090029	33090179	.	+	.	Parent=Os01t0781000-02
Chr01	irgsp1_rep	mRNA	33091621	33096361	.	+	.	ID=Os01t0781100-01;Name=Os01t0781100-01;Locus_id=Os01g0781100;Note=Similar to NBS-LRR protein (Fragment).;Transcript_evidence=AK243093 (DDBJ%2C Best hit);ORF_evidence=Q941L9 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J100023D19;Oryzabase=20240;TENOR=Os01t0781100-01;KEGG=Os01t0781100-01
Chr01	irgsp1_rep	five_prime_UTR	33091621	33091715	.	+	.	Parent=Os01t0781100-01
Chr01	irgsp1_rep	five_prime_UTR	33091948	33092144	.	+	.	Parent=Os01t0781100-01
Chr01	irgsp1_rep	CDS	33092145	33095966	.	+	0	Parent=Os01t0781100-01
Chr01	irgsp1_rep	three_prime_UTR	33095967	33096361	.	+	.	Parent=Os01t0781100-01
Chr01	irgsp1_rep	mRNA	33098082	33103904	.	+	.	ID=Os01t0781200-01;Name=Os01t0781200-01;Locus_id=Os01g0781200;CGSNL Gene Symbol=PI64;CGSNL Gene Name=PYRICULARIA ORYZAE RESISTANCE 64;Oryzabase Gene Symbol Synonym(s)=Pi64;Oryzabase Gene Name Synonym(s)=Magnaporthe grisea resistance-64%2C Blast resistance 64;Note=Similar to Rust resistance protein.;Transcript_evidence=AK068412 (DDBJ%2C Best hit);ORF_evidence=E0Y9W1 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013154B18;Oryzabase=20241;Expression=AK068412;TENOR=Os01t0781200-01;KEGG=Os01t0781200-01
Chr01	irgsp1_rep	five_prime_UTR	33098082	33098447	.	+	.	Parent=Os01t0781200-01
Chr01	irgsp1_rep	five_prime_UTR	33099860	33099876	.	+	.	Parent=Os01t0781200-01
Chr01	irgsp1_rep	CDS	33099877	33103743	.	+	0	Parent=Os01t0781200-01
Chr01	irgsp1_rep	three_prime_UTR	33103744	33103904	.	+	.	Parent=Os01t0781200-01
Chr01	irgsp1_rep	mRNA	33118315	33119858	.	+	.	ID=Os01t0781600-01;Name=Os01t0781600-01;Locus_id=Os01g0781600;Note=Conserved hypothetical protein.;Transcript_evidence=AK073325 (DDBJ%2C Best hit),AK099154 (DDBJ%2C Best hit);ORF_evidence=A3A1W5 (UniProt);NIAS_FLcDNA=J033029P08,J023073E07;TENOR=Os01t0781600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	33118315	33119510	.	+	.	Parent=Os01t0781600-01
Chr01	irgsp1_rep	CDS	33119511	33119702	.	+	0	Parent=Os01t0781600-01
Chr01	irgsp1_rep	three_prime_UTR	33119703	33119858	.	+	.	Parent=Os01t0781600-01
Chr01	irgsp1_rep	mRNA	33120499	33124371	.	+	.	ID=Os01t0781700-00;Name=Os01t0781700-00;Locus_id=Os01g0781700;CGSNL Gene Symbol=PI37;CGSNL Gene Name=PYRICULARIA ORYZAE RESISTANCE 37;Oryzabase Gene Symbol Synonym(s)=Pi37(t)%2C Pi37;Oryzabase Gene Name Synonym(s)=Pyricularia oryzae resistance 37%2C Magnaporthe grisea resistance 37%2C Blast resistance 37;Note=Similar to Blast resistance protein Pi37.;Transcript_evidence=ab initio prediction;ORF_evidence=Q06AJ9 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);Oryzabase=6326;TENOR=Os01t0781700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	33120499	33121212	.	+	0	Parent=Os01t0781700-00
Chr01	irgsp1_rep	CDS	33121471	33124371	.	+	0	Parent=Os01t0781700-00
Chr01	irgsp1_rep	mRNA	33138943	33140486	.	+	.	ID=Os01t0781833-01;Name=Os01t0781833-01;Locus_id=Os01g0781833;Note=Conserved hypothetical protein.;Transcript_evidence=AK073325 (DDBJ%2C Best hit),AK099154 (DDBJ%2C Best hit);ORF_evidence=A3A1W5 (UniProt);NIAS_FLcDNA=J033029P08,J023073E07;TENOR=Os01t0781833-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	33138943	33140138	.	+	.	Parent=Os01t0781833-01
Chr01	irgsp1_rep	CDS	33140139	33140330	.	+	0	Parent=Os01t0781833-01
Chr01	irgsp1_rep	three_prime_UTR	33140331	33140486	.	+	.	Parent=Os01t0781833-01
Chr01	irgsp1_rep	mRNA	33136846	33145541	.	+	.	ID=Os01t0782100-01;Name=Os01t0782100-01;Locus_id=Os01g0782100;RAP-DB Gene Symbol Synonym(s)=PISH%2C Pi sh%2C Pish%2C Pi-sh%2C Pish(t);RAP-DB Gene Name Synonym(s)=PYRICULARIA ORYZAE RESISTANCE SH%2C Pyricularia oryzae resistance-sh%2C Magnaporthe grisea resistance-sh%2C Blast resistance sh;CGSNL Gene Symbol=PISH;CGSNL Gene Name=PYRICULARIA ORYZAE RESISTANCE SH;Oryzabase Gene Symbol Synonym(s)=Pi sh%2C Pish%2C Pi-sh%2C Pish(t);Oryzabase Gene Name Synonym(s)=Pyricularia oryzae resistance-sh%2C Magnaporthe grisea resistance-sh%2C Blast resistance sh;Note=Protein with NBS (nucleotide-binding site) and LRR(leucine-rich repeat)%2C Race-specific resistance to blast;Transcript_evidence=NM_001185663;ORF_evidence=Q8LQR6;GO=Molecular Function: ADP binding (GO:0043531);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),NB-ARC (IPR002182);Manual Curation=June 13%2C 2018;Literature_PMID=28493203,20707904,DOI:10.1038/srep04550;Oryzabase=269;TENOR=Os01t0782100-00
Chr01	irgsp1_rep	five_prime_UTR	33136846	33137162	.	+	.	Parent=Os01t0782100-01
Chr01	irgsp1_rep	five_prime_UTR	33141115	33141126	.	+	.	Parent=Os01t0782100-01
Chr01	irgsp1_rep	CDS	33141127	33144999	.	+	0	Parent=Os01t0782100-01
Chr01	irgsp1_rep	three_prime_UTR	33145000	33145037	.	+	.	Parent=Os01t0782100-01
Chr01	irgsp1_rep	three_prime_UTR	33145146	33145541	.	+	.	Parent=Os01t0782100-01
Chr01	irgsp1_rep	mRNA	33145928	33152527	.	-	.	ID=Os01t0782200-01;Name=Os01t0782200-01;Locus_id=Os01g0782200;Note=Diacylglycerol kinase%2C catalytic region domain containing protein.;Transcript_evidence=AK107062 (DDBJ%2C Best hit),AK072068 (DDBJ%2C Best hit);ORF_evidence=B8AAF6 (UniProt);GO=Biological Process: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway (GO:0007205),Molecular Function: diacylglycerol kinase activity (GO:0004143);InterPro=Diacylglycerol kinase%2C catalytic domain (IPR001206);NIAS_FLcDNA=002-121-E02,J013108A22;TENOR=Os01t0782200-01
Chr01	irgsp1_rep	five_prime_UTR	33152432	33152527	.	-	.	Parent=Os01t0782200-01
Chr01	irgsp1_rep	CDS	33152038	33152431	.	-	0	Parent=Os01t0782200-01
Chr01	irgsp1_rep	CDS	33151734	33151856	.	-	2	Parent=Os01t0782200-01
Chr01	irgsp1_rep	CDS	33151520	33151620	.	-	2	Parent=Os01t0782200-01
Chr01	irgsp1_rep	CDS	33150637	33150709	.	-	0	Parent=Os01t0782200-01
Chr01	irgsp1_rep	CDS	33150466	33150552	.	-	2	Parent=Os01t0782200-01
Chr01	irgsp1_rep	CDS	33150286	33150363	.	-	2	Parent=Os01t0782200-01
Chr01	irgsp1_rep	CDS	33150122	33150192	.	-	2	Parent=Os01t0782200-01
Chr01	irgsp1_rep	CDS	33149262	33149537	.	-	0	Parent=Os01t0782200-01
Chr01	irgsp1_rep	CDS	33146490	33146612	.	-	0	Parent=Os01t0782200-01
Chr01	irgsp1_rep	CDS	33146125	33146322	.	-	0	Parent=Os01t0782200-01
Chr01	irgsp1_rep	three_prime_UTR	33145928	33146124	.	-	.	Parent=Os01t0782200-01
Chr01	irgsp1_rep	mRNA	33137907	33152491	.	-	.	ID=Os01t0782200-02;Name=Os01t0782200-02;Locus_id=Os01g0782200;Note=Similar to D-erythro-sphingosine kinase/ diacylglycerol kinase.;Transcript_evidence=AK289243 (DDBJ%2C Best hit);ORF_evidence=NP_001044446.1 (RefSeq);GO=Biological Process: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway (GO:0007205),Molecular Function: diacylglycerol kinase activity (GO:0004143);InterPro=Diacylglycerol kinase%2C catalytic domain (IPR001206);NIAS_FLcDNA=J100076H24;TENOR=Os01t0782200-02;KEGG=Os01t0782200-02 (EC:2.7.1.91)
Chr01	irgsp1_rep	five_prime_UTR	33152432	33152491	.	-	.	Parent=Os01t0782200-02
Chr01	irgsp1_rep	CDS	33152038	33152431	.	-	0	Parent=Os01t0782200-02
Chr01	irgsp1_rep	CDS	33151734	33151856	.	-	2	Parent=Os01t0782200-02
Chr01	irgsp1_rep	CDS	33151520	33151620	.	-	2	Parent=Os01t0782200-02
Chr01	irgsp1_rep	CDS	33150637	33150709	.	-	0	Parent=Os01t0782200-02
Chr01	irgsp1_rep	CDS	33150466	33150552	.	-	2	Parent=Os01t0782200-02
Chr01	irgsp1_rep	CDS	33150286	33150363	.	-	2	Parent=Os01t0782200-02
Chr01	irgsp1_rep	CDS	33150122	33150192	.	-	2	Parent=Os01t0782200-02
Chr01	irgsp1_rep	CDS	33149262	33149537	.	-	0	Parent=Os01t0782200-02
Chr01	irgsp1_rep	CDS	33146490	33146612	.	-	0	Parent=Os01t0782200-02
Chr01	irgsp1_rep	CDS	33146141	33146322	.	-	0	Parent=Os01t0782200-02
Chr01	irgsp1_rep	CDS	33138216	33138273	.	-	1	Parent=Os01t0782200-02
Chr01	irgsp1_rep	three_prime_UTR	33137907	33138215	.	-	.	Parent=Os01t0782200-02
Chr01	irgsp1_rep	mRNA	33147601	33148342	.	+	.	ID=Os01t0782300-01;Name=Os01t0782300-01;Locus_id=Os01g0782300;Note=Conserved hypothetical protein.;Transcript_evidence=AK109175 (DDBJ%2C Best hit);ORF_evidence=Q5W6F4 (UniProt);NIAS_FLcDNA=002-155-H10;TENOR=Os01t0782300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	33147601	33148204	.	+	.	Parent=Os01t0782300-01
Chr01	irgsp1_rep	CDS	33148205	33148261	.	+	0	Parent=Os01t0782300-01
Chr01	irgsp1_rep	three_prime_UTR	33148262	33148342	.	+	.	Parent=Os01t0782300-01
Chr01	irgsp1_rep	mRNA	33153155	33153222	.	-	.	ID=Os01t0782400-00;Name=Os01t0782400-00;Locus_id=Os01g0782400;Note=Non-protein coding transcript.;Transcript_evidence=X06284 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0782400-00
Chr01	irgsp1_rep	exon	33153155	33153222	.	-	.	Parent=Os01t0782400-00
Chr01	irgsp1_rep	mRNA	33154311	33158317	.	-	.	ID=Os01t0782500-01;Name=Os01t0782500-01;Locus_id=Os01g0782500;Note=Phospholipid/glycerol acyltransferase domain containing protein.;Transcript_evidence=AK103516 (DDBJ%2C Best hit);ORF_evidence=NP_001151948.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Phospholipid/glycerol acyltransferase (IPR002123);NIAS_FLcDNA=J033131G20;Expression=AK103516;TENOR=Os01t0782500-01;KEGG=Os01t0782500-01
Chr01	irgsp1_rep	five_prime_UTR	33158116	33158317	.	-	.	Parent=Os01t0782500-01
Chr01	irgsp1_rep	five_prime_UTR	33156560	33156647	.	-	.	Parent=Os01t0782500-01
Chr01	irgsp1_rep	CDS	33155934	33156559	.	-	0	Parent=Os01t0782500-01
Chr01	irgsp1_rep	CDS	33155557	33155687	.	-	1	Parent=Os01t0782500-01
Chr01	irgsp1_rep	CDS	33154398	33154840	.	-	2	Parent=Os01t0782500-01
Chr01	irgsp1_rep	three_prime_UTR	33154311	33154397	.	-	.	Parent=Os01t0782500-01
Chr01	irgsp1_rep	mRNA	33168429	33172680	.	-	.	ID=Os01t0782800-00;Name=Os01t0782800-00;Locus_id=Os01g0782800;CGSNL Gene Symbol=CNGC1;CGSNL Gene Name=CYCLIC NUCLEOTIDE GATED CHANNEL 1;Oryzabase Gene Symbol Synonym(s)=OsCNGC1%2C OsCNGC15%2C CNGC15;Oryzabase Gene Name Synonym(s)=Cyclic nucleotide gated channel 1%2C Cyclic nucleotide-gated ion channel 15;Note=Similar to Cyclic nucleotide-gated ion channel 4 (AtCNGC4) (Cyclic nucleotide-and calmodulin-regulated ion channel 4) (AtHLM1).;Transcript_evidence=AK375593 (DDBJ);ORF_evidence=Q4VDN3 (UniProt);GO=Biological Process: ion transport (GO:0006811),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: ion channel activity (GO:0005216);InterPro=Cyclic nucleotide-binding domain (IPR000595),Ion transport (IPR005821),RmlC-like jelly roll fold (IPR014710),Cyclic nucleotide-binding-like (IPR018490);Oryzabase=15474;TENOR=Os01t0782800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	33172665	33172680	.	-	.	Parent=Os01t0782800-00
Chr01	irgsp1_rep	CDS	33172122	33172664	.	-	0	Parent=Os01t0782800-00
Chr01	irgsp1_rep	CDS	33170140	33170349	.	-	0	Parent=Os01t0782800-00
Chr01	irgsp1_rep	CDS	33169739	33170055	.	-	0	Parent=Os01t0782800-00
Chr01	irgsp1_rep	CDS	33169520	33169628	.	-	1	Parent=Os01t0782800-00
Chr01	irgsp1_rep	CDS	33169201	33169437	.	-	0	Parent=Os01t0782800-00
Chr01	irgsp1_rep	CDS	33169032	33169118	.	-	0	Parent=Os01t0782800-00
Chr01	irgsp1_rep	CDS	33168429	33168947	.	-	0	Parent=Os01t0782800-00
Chr01	irgsp1_rep	mRNA	33168428	33169121	.	+	.	ID=Os01t0782850-00;Name=Os01t0782850-00;Locus_id=Os01g0782850;Note=Hypothetical gene.;Transcript_evidence=BT087158 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0782850-00
Chr01	irgsp1_rep	five_prime_UTR	33168428	33168798	.	+	.	Parent=Os01t0782850-00
Chr01	irgsp1_rep	CDS	33168799	33168929	.	+	0	Parent=Os01t0782850-00
Chr01	irgsp1_rep	CDS	33169011	33169121	.	+	1	Parent=Os01t0782850-00
Chr01	irgsp1_rep	mRNA	33177222	33177745	.	-	.	ID=Os01t0782901-01;Name=Os01t0782901-01;Locus_id=Os01g0782901;RAP-DB Gene Symbol Synonym(s)=AM15;RAP-DB Gene Name Synonym(s)=ARBUSCULAR MYCORRHIZA15%2C ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 15;CGSNL Gene Symbol=AM15;CGSNL Gene Name=ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 15;Oryzabase Gene Symbol Synonym(s)=AM15;Note=Arbuscular mycorrhizal (AM)-specific marker%2C Peptidoglycan binding LysM domain 2 containing protein;Transcript_evidence=Inferred from literature;ORF_evidence=D0UTL7;InterPro=LysM domain (IPR018392);Manual Curation=May 15%2C 2017;Literature_PMID=19033527;Oryzabase=8186;TENOR=Os01t0782901-01
Chr01	irgsp1_rep	CDS	33177631	33177745	.	-	0	Parent=Os01t0782901-01
Chr01	irgsp1_rep	CDS	33177222	33177457	.	-	2	Parent=Os01t0782901-01
Chr01	irgsp1_rep	mRNA	33181340	33181729	.	-	.	ID=Os01t0783000-01;Name=Os01t0783000-01;Locus_id=Os01g0783000;CGSNL Gene Symbol=AM3;CGSNL Gene Name=ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 3;Oryzabase Gene Symbol Synonym(s)=AM3;Note=Similar to lysM domain containing protein.;Transcript_evidence=EU969122 (DDBJ);ORF_evidence=NP_001151004.1 (RefSeq);GO=Biological Process: cell wall macromolecule catabolic process (GO:0016998);InterPro=Peptidoglycan-binding Lysin subgroup (IPR002482),Peptidoglycan-binding lysin domain (IPR018392);Oryzabase=8182;TENOR=Os01t0783000-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	33181565	33181729	.	-	.	Parent=Os01t0783000-01
Chr01	irgsp1_rep	CDS	33181340	33181564	.	-	0	Parent=Os01t0783000-01
Chr01	irgsp1_rep	mRNA	33182589	33186141	.	+	.	ID=Os01t0783100-01;Name=Os01t0783100-01;Locus_id=Os01g0783100;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK067606 (DDBJ%2C Best hit);ORF_evidence=A2WVS3 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013112M07;Expression=AK067606;TENOR=Os01t0783100-01;KEGG=Os01t0783100-01
Chr01	irgsp1_rep	five_prime_UTR	33182589	33182707	.	+	.	Parent=Os01t0783100-01
Chr01	irgsp1_rep	CDS	33182708	33184762	.	+	0	Parent=Os01t0783100-01
Chr01	irgsp1_rep	three_prime_UTR	33184763	33184944	.	+	.	Parent=Os01t0783100-01
Chr01	irgsp1_rep	three_prime_UTR	33185773	33185926	.	+	.	Parent=Os01t0783100-01
Chr01	irgsp1_rep	three_prime_UTR	33186052	33186141	.	+	.	Parent=Os01t0783100-01
Chr01	irgsp1_rep	mRNA	33186610	33192979	.	-	.	ID=Os01t0783200-01;Name=Os01t0783200-01;Locus_id=Os01g0783200;CGSNL Gene Symbol=DGK7;CGSNL Gene Name=DIACYLGLYCEROL KINASE 7;Oryzabase Gene Symbol Synonym(s)=OsDGK7;Oryzabase Gene Name Synonym(s)=Diacylglycerol kinase 7;Note=Similar to Diacylglycerol kinase.;Transcript_evidence=AK102590 (DDBJ%2C Best hit);ORF_evidence=Q9FVD1 (UniProt);GO=Biological Process: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway (GO:0007205),Molecular Function: diacylglycerol kinase activity (GO:0004143);InterPro=Diacylglycerol kinase%2C accessory domain (IPR000756),Diacylglycerol kinase%2C catalytic domain (IPR001206),Diacylglycerol kinase%2C plant (IPR016961);NIAS_FLcDNA=J033098F18;Oryzabase=23315;Expression=AK102590;TENOR=Os01t0783200-01;KEGG=Os01t0783200-01 (EC:2.7.1.107)
Chr01	irgsp1_rep	five_prime_UTR	33192757	33192979	.	-	.	Parent=Os01t0783200-01
Chr01	irgsp1_rep	five_prime_UTR	33191217	33191228	.	-	.	Parent=Os01t0783200-01
Chr01	irgsp1_rep	CDS	33191019	33191216	.	-	0	Parent=Os01t0783200-01
Chr01	irgsp1_rep	CDS	33190775	33190897	.	-	0	Parent=Os01t0783200-01
Chr01	irgsp1_rep	CDS	33190524	33190652	.	-	0	Parent=Os01t0783200-01
Chr01	irgsp1_rep	CDS	33189967	33190052	.	-	0	Parent=Os01t0783200-01
Chr01	irgsp1_rep	CDS	33189748	33189868	.	-	1	Parent=Os01t0783200-01
Chr01	irgsp1_rep	CDS	33188752	33188800	.	-	0	Parent=Os01t0783200-01
Chr01	irgsp1_rep	CDS	33188512	33188594	.	-	2	Parent=Os01t0783200-01
Chr01	irgsp1_rep	CDS	33188307	33188374	.	-	0	Parent=Os01t0783200-01
Chr01	irgsp1_rep	CDS	33188094	33188168	.	-	1	Parent=Os01t0783200-01
Chr01	irgsp1_rep	CDS	33187673	33187760	.	-	1	Parent=Os01t0783200-01
Chr01	irgsp1_rep	CDS	33187444	33187563	.	-	0	Parent=Os01t0783200-01
Chr01	irgsp1_rep	CDS	33186828	33187151	.	-	0	Parent=Os01t0783200-01
Chr01	irgsp1_rep	three_prime_UTR	33186610	33186827	.	-	.	Parent=Os01t0783200-01
Chr01	irgsp1_rep	mRNA	33185460	33192926	.	-	.	ID=Os01t0783200-02;Name=Os01t0783200-02;Locus_id=Os01g0783200;CGSNL Gene Symbol=DGK7;CGSNL Gene Name=DIACYLGLYCEROL KINASE 7;Oryzabase Gene Symbol Synonym(s)=OsDGK7;Oryzabase Gene Name Synonym(s)=Diacylglycerol kinase 7;Note=Similar to Diacylglycerol kinase.;Transcript_evidence=AK119289 (DDBJ%2C Best hit);ORF_evidence=Q9FVD1 (UniProt);GO=Biological Process: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway (GO:0007205),Molecular Function: diacylglycerol kinase activity (GO:0004143);InterPro=Diacylglycerol kinase%2C accessory domain (IPR000756),Diacylglycerol kinase%2C catalytic domain (IPR001206),Diacylglycerol kinase%2C plant (IPR016961);NIAS_FLcDNA=001-130-D04;Oryzabase=23315;Expression=AK119289;TENOR=Os01t0783200-02;KEGG=Os01t0783200-02 (EC:2.7.1.107)
Chr01	irgsp1_rep	five_prime_UTR	33192757	33192926	.	-	.	Parent=Os01t0783200-02
Chr01	irgsp1_rep	five_prime_UTR	33191217	33191228	.	-	.	Parent=Os01t0783200-02
Chr01	irgsp1_rep	CDS	33191019	33191216	.	-	0	Parent=Os01t0783200-02
Chr01	irgsp1_rep	CDS	33190775	33190897	.	-	0	Parent=Os01t0783200-02
Chr01	irgsp1_rep	CDS	33190524	33190652	.	-	0	Parent=Os01t0783200-02
Chr01	irgsp1_rep	CDS	33189967	33190052	.	-	0	Parent=Os01t0783200-02
Chr01	irgsp1_rep	CDS	33189748	33189868	.	-	1	Parent=Os01t0783200-02
Chr01	irgsp1_rep	CDS	33188752	33188800	.	-	0	Parent=Os01t0783200-02
Chr01	irgsp1_rep	CDS	33188512	33188594	.	-	2	Parent=Os01t0783200-02
Chr01	irgsp1_rep	CDS	33188307	33188374	.	-	0	Parent=Os01t0783200-02
Chr01	irgsp1_rep	CDS	33188094	33188168	.	-	1	Parent=Os01t0783200-02
Chr01	irgsp1_rep	CDS	33187673	33187760	.	-	1	Parent=Os01t0783200-02
Chr01	irgsp1_rep	CDS	33187444	33187563	.	-	0	Parent=Os01t0783200-02
Chr01	irgsp1_rep	CDS	33186828	33187151	.	-	0	Parent=Os01t0783200-02
Chr01	irgsp1_rep	three_prime_UTR	33185460	33186827	.	-	.	Parent=Os01t0783200-02
Chr01	irgsp1_rep	mRNA	33196867	33197909	.	-	.	ID=Os01t0783400-01;Name=Os01t0783400-01;Locus_id=Os01g0783400;Note=Similar to DNA cross-link repair protein-related.;Transcript_evidence=AK287803 (DDBJ%2C Best hit);ORF_evidence=NP_174061.1 (RefSeq);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Beta-lactamase-like (IPR001279);NIAS_FLcDNA=J065177N24;TENOR=Os01t0783400-01;KEGG=Os01t0783400-01
Chr01	irgsp1_rep	five_prime_UTR	33197908	33197909	.	-	.	Parent=Os01t0783400-01
Chr01	irgsp1_rep	CDS	33197523	33197907	.	-	0	Parent=Os01t0783400-01
Chr01	irgsp1_rep	CDS	33197142	33197410	.	-	2	Parent=Os01t0783400-01
Chr01	irgsp1_rep	three_prime_UTR	33196867	33197141	.	-	.	Parent=Os01t0783400-01
Chr01	irgsp1_rep	mRNA	33198608	33201733	.	-	.	ID=Os01t0783500-01;Name=Os01t0783500-01;Locus_id=Os01g0783500;Note=Rossmann-like alpha/beta/alpha sandwich fold domain containing protein.;Transcript_evidence=AK072280 (DDBJ%2C Best hit);ORF_evidence=NP_001149193.1 (RefSeq);GO=Biological Process: response to stress (GO:0006950);InterPro=Universal stress protein A (IPR006015),UspA (IPR006016),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J023018C18;Expression=AK072280;TENOR=Os01t0783500-01;KEGG=Os01t0783500-01
Chr01	irgsp1_rep	five_prime_UTR	33201486	33201733	.	-	.	Parent=Os01t0783500-01
Chr01	irgsp1_rep	CDS	33200705	33201485	.	-	0	Parent=Os01t0783500-01
Chr01	irgsp1_rep	CDS	33198906	33198913	.	-	2	Parent=Os01t0783500-01
Chr01	irgsp1_rep	three_prime_UTR	33198608	33198905	.	-	.	Parent=Os01t0783500-01
Chr01	irgsp1_rep	mRNA	33205190	33207633	.	+	.	ID=Os01t0783600-01;Name=Os01t0783600-01;Locus_id=Os01g0783600;CGSNL Gene Symbol=ISC22;CGSNL Gene Name=IRON-SULFUR CLUSTER PROTEIN 22;Oryzabase Gene Symbol Synonym(s)=OsISC22;Oryzabase Gene Name Synonym(s)=Iron-sulfur cluster protein 22;Note=Similar to Frataxin.;Transcript_evidence=AK240768 (DDBJ%2C Best hit);ORF_evidence=B4FP34 (UniProt);GO=Biological Process: cellular iron ion homeostasis (GO:0006879),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: mitochondrion (GO:0005739),Molecular Function: ferroxidase activity (GO:0004322);InterPro=Frataxin%2C subgroup (IPR001794),Frataxin-like (IPR002908),Frataxin (IPR017789),Frataxin conserved site (IPR020895);NIAS_FLcDNA=J053063D20;Oryzabase=13434;TENOR=Os01t0783600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	33205190	33205269	.	+	.	Parent=Os01t0783600-01
Chr01	irgsp1_rep	CDS	33205270	33205520	.	+	0	Parent=Os01t0783600-01
Chr01	irgsp1_rep	CDS	33205958	33206030	.	+	1	Parent=Os01t0783600-01
Chr01	irgsp1_rep	CDS	33206147	33206194	.	+	0	Parent=Os01t0783600-01
Chr01	irgsp1_rep	CDS	33206296	33206390	.	+	0	Parent=Os01t0783600-01
Chr01	irgsp1_rep	CDS	33207315	33207444	.	+	1	Parent=Os01t0783600-01
Chr01	irgsp1_rep	three_prime_UTR	33207445	33207633	.	+	.	Parent=Os01t0783600-01
Chr01	irgsp1_rep	mRNA	33207714	33208262	.	-	.	ID=Os01t0783700-01;Name=Os01t0783700-01;Locus_id=Os01g0783700;Note=Similar to EF-hand Ca2+-binding protein CCD1.;Transcript_evidence=AK109278 (DDBJ%2C Best hit);ORF_evidence=B6T6X5 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249);NIAS_FLcDNA=002-188-B02;Expression=AK109278;TENOR=Os01t0783700-01;KEGG=Os01t0783700-01
Chr01	irgsp1_rep	five_prime_UTR	33208173	33208262	.	-	.	Parent=Os01t0783700-01
Chr01	irgsp1_rep	CDS	33207837	33208172	.	-	0	Parent=Os01t0783700-01
Chr01	irgsp1_rep	three_prime_UTR	33207714	33207836	.	-	.	Parent=Os01t0783700-01
Chr01	irgsp1_rep	mRNA	33210231	33216314	.	+	.	ID=Os01t0783800-01;Name=Os01t0783800-01;Locus_id=Os01g0783800;CGSNL Gene Symbol=SDS2;CGSNL Gene Name=SPL11 CELL-DEATH SUPPRESSOR 2;Oryzabase Gene Symbol Synonym(s)=OsSDS2;Oryzabase Gene Name Synonym(s)=SPL11 cell-death suppressor 2;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK111632 (DDBJ%2C Best hit);ORF_evidence=F2D8U5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Serine-threonine/tyrosine-protein kinase (IPR001245),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),S-receptor-like serine/threonine-protein kinase (IPR024171);NIAS_FLcDNA=J013116G01;Oryzabase=22440;Expression=AK111632;TENOR=Os01t0783800-01;KEGG=Os01t0783800-01
Chr01	irgsp1_rep	five_prime_UTR	33210231	33210339	.	+	.	Parent=Os01t0783800-01
Chr01	irgsp1_rep	five_prime_UTR	33210518	33211230	.	+	.	Parent=Os01t0783800-01
Chr01	irgsp1_rep	five_prime_UTR	33211358	33211380	.	+	.	Parent=Os01t0783800-01
Chr01	irgsp1_rep	CDS	33211381	33212668	.	+	0	Parent=Os01t0783800-01
Chr01	irgsp1_rep	CDS	33212770	33212877	.	+	2	Parent=Os01t0783800-01
Chr01	irgsp1_rep	CDS	33212988	33213175	.	+	2	Parent=Os01t0783800-01
Chr01	irgsp1_rep	CDS	33215027	33215237	.	+	0	Parent=Os01t0783800-01
Chr01	irgsp1_rep	CDS	33215341	33215578	.	+	2	Parent=Os01t0783800-01
Chr01	irgsp1_rep	CDS	33215679	33215829	.	+	1	Parent=Os01t0783800-01
Chr01	irgsp1_rep	CDS	33215897	33216196	.	+	0	Parent=Os01t0783800-01
Chr01	irgsp1_rep	three_prime_UTR	33216197	33216314	.	+	.	Parent=Os01t0783800-01
Chr01	irgsp1_rep	mRNA	33215018	33216040	.	-	.	ID=Os01t0783851-00;Name=Os01t0783851-00;Locus_id=Os01g0783851;Note=Hypothetical protein.;Transcript_evidence=FP096127 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0783851-00
Chr01	irgsp1_rep	five_prime_UTR	33215830	33216040	.	-	.	Parent=Os01t0783851-00
Chr01	irgsp1_rep	CDS	33215551	33215829	.	-	0	Parent=Os01t0783851-00
Chr01	irgsp1_rep	three_prime_UTR	33215018	33215550	.	-	.	Parent=Os01t0783851-00
Chr01	irgsp1_rep	mRNA	33221020	33221565	.	-	.	ID=Os01t0784000-01;Name=Os01t0784000-01;Locus_id=Os01g0784000;Note=Similar to OSIGBa0117N13.1 protein.;Transcript_evidence=AK062753 (DDBJ%2C Best hit);ORF_evidence=Q00RL6 (UniProt);NIAS_FLcDNA=001-106-G05;Expression=AK062753;TENOR=Os01t0784000-01;KEGG=Os01t0784000-01
Chr01	irgsp1_rep	five_prime_UTR	33221565	33221565	.	-	.	Parent=Os01t0784000-01
Chr01	irgsp1_rep	CDS	33221235	33221564	.	-	0	Parent=Os01t0784000-01
Chr01	irgsp1_rep	three_prime_UTR	33221020	33221234	.	-	.	Parent=Os01t0784000-01
Chr01	irgsp1_rep	mRNA	33227678	33231377	.	-	.	ID=Os01t0784101-00;Name=Os01t0784101-00;Locus_id=Os01g0784101;Note=Hypothetical protein.;Transcript_evidence=tplb0048b10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0784101-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	33231210	33231377	.	-	.	Parent=Os01t0784101-00
Chr01	irgsp1_rep	five_prime_UTR	33230928	33231131	.	-	.	Parent=Os01t0784101-00
Chr01	irgsp1_rep	five_prime_UTR	33230366	33230830	.	-	.	Parent=Os01t0784101-00
Chr01	irgsp1_rep	five_prime_UTR	33228984	33229014	.	-	.	Parent=Os01t0784101-00
Chr01	irgsp1_rep	CDS	33227718	33228983	.	-	0	Parent=Os01t0784101-00
Chr01	irgsp1_rep	three_prime_UTR	33227678	33227717	.	-	.	Parent=Os01t0784101-00
Chr01	irgsp1_rep	mRNA	33227652	33231831	.	+	.	ID=Os01t0784200-00;Name=Os01t0784200-00;Locus_id=Os01g0784200;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=tplb0037d20 (Wheat FLcDNA);ORF_evidence=NP_001044460.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Serine-threonine/tyrosine-protein kinase (IPR001245),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),S-locus receptor kinase%2C C-terminal (IPR021820),S-receptor-like serine/threonine-protein kinase (IPR024171);TENOR=Os01t0784200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	33227652	33228963	.	+	0	Parent=Os01t0784200-00
Chr01	irgsp1_rep	CDS	33230115	33230476	.	+	2	Parent=Os01t0784200-00
Chr01	irgsp1_rep	CDS	33230605	33230815	.	+	0	Parent=Os01t0784200-00
Chr01	irgsp1_rep	CDS	33230916	33231153	.	+	2	Parent=Os01t0784200-00
Chr01	irgsp1_rep	CDS	33231234	33231384	.	+	1	Parent=Os01t0784200-00
Chr01	irgsp1_rep	CDS	33231475	33231771	.	+	0	Parent=Os01t0784200-00
Chr01	irgsp1_rep	three_prime_UTR	33231772	33231831	.	+	.	Parent=Os01t0784200-00
Chr01	irgsp1_rep	mRNA	33238849	33240103	.	-	.	ID=Os01t0784450-00;Name=Os01t0784450-00;Locus_id=Os01g0784450;Note=Hypothetical protein.;Transcript_evidence=AK333662 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0784450-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	33240102	33240103	.	-	.	Parent=Os01t0784450-00
Chr01	irgsp1_rep	CDS	33239628	33240101	.	-	0	Parent=Os01t0784450-00
Chr01	irgsp1_rep	three_prime_UTR	33238849	33239627	.	-	.	Parent=Os01t0784450-00
Chr01	irgsp1_rep	mRNA	33240486	33243618	.	+	.	ID=Os01t0784500-01;Name=Os01t0784500-01;Locus_id=Os01g0784500;CGSNL Gene Symbol=RLCK44;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 44;Oryzabase Gene Symbol Synonym(s)=OsRLCK44;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 44;Note=Conserved hypothetical protein.;Transcript_evidence=AK109693 (DDBJ%2C Best hit);ORF_evidence=B9ETD6 (UniProt);NIAS_FLcDNA=002-145-E09;Oryzabase=18761;TENOR=Os01t0784500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	33240486	33240726	.	+	.	Parent=Os01t0784500-01
Chr01	irgsp1_rep	CDS	33240727	33240742	.	+	0	Parent=Os01t0784500-01
Chr01	irgsp1_rep	CDS	33241765	33242102	.	+	2	Parent=Os01t0784500-01
Chr01	irgsp1_rep	CDS	33242188	33242235	.	+	0	Parent=Os01t0784500-01
Chr01	irgsp1_rep	three_prime_UTR	33242236	33242748	.	+	.	Parent=Os01t0784500-01
Chr01	irgsp1_rep	three_prime_UTR	33242826	33242976	.	+	.	Parent=Os01t0784500-01
Chr01	irgsp1_rep	three_prime_UTR	33243058	33243618	.	+	.	Parent=Os01t0784500-01
Chr01	irgsp1_rep	mRNA	33244777	33248099	.	+	.	ID=Os01t0784600-01;Name=Os01t0784600-01;Locus_id=Os01g0784600;Note=Similar to nodulation protein-related.;Transcript_evidence=AK067527 (DDBJ%2C Best hit);ORF_evidence=NP_190631.2 (RefSeq);NIAS_FLcDNA=J013109O21;Expression=AK067527;TENOR=Os01t0784600-01;KEGG=Os01t0784600-01
Chr01	irgsp1_rep	five_prime_UTR	33244777	33245139	.	+	.	Parent=Os01t0784600-01
Chr01	irgsp1_rep	CDS	33245140	33245211	.	+	0	Parent=Os01t0784600-01
Chr01	irgsp1_rep	CDS	33245463	33245710	.	+	0	Parent=Os01t0784600-01
Chr01	irgsp1_rep	CDS	33245805	33246063	.	+	1	Parent=Os01t0784600-01
Chr01	irgsp1_rep	CDS	33247402	33247581	.	+	0	Parent=Os01t0784600-01
Chr01	irgsp1_rep	CDS	33247664	33247945	.	+	0	Parent=Os01t0784600-01
Chr01	irgsp1_rep	three_prime_UTR	33247946	33248099	.	+	.	Parent=Os01t0784600-01
Chr01	irgsp1_rep	mRNA	33248878	33256713	.	-	.	ID=Os01t0784700-00;Name=Os01t0784700-00;Locus_id=Os01g0784700;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AY327041 (DDBJ%2C Best hit);ORF_evidence=B6U2B7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Epidermal growth factor-like%2C type 3 (IPR000742),S-locus glycoprotein (IPR000858),Serine-threonine/tyrosine-protein kinase (IPR001245),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),S-locus receptor kinase%2C C-terminal (IPR021820),S-receptor-like serine/threonine-protein kinase (IPR024171);Expression=AY327041;TENOR=Os01t0784700-00;KEGG=Os01t0784700-00
Chr01	irgsp1_rep	five_prime_UTR	33256585	33256713	.	-	.	Parent=Os01t0784700-00
Chr01	irgsp1_rep	CDS	33255826	33256584	.	-	0	Parent=Os01t0784700-00
Chr01	irgsp1_rep	CDS	33255148	33255709	.	-	0	Parent=Os01t0784700-00
Chr01	irgsp1_rep	CDS	33250685	33250816	.	-	2	Parent=Os01t0784700-00
Chr01	irgsp1_rep	CDS	33250382	33250557	.	-	2	Parent=Os01t0784700-00
Chr01	irgsp1_rep	CDS	33249938	33250148	.	-	0	Parent=Os01t0784700-00
Chr01	irgsp1_rep	CDS	33249616	33249820	.	-	2	Parent=Os01t0784700-00
Chr01	irgsp1_rep	CDS	33249374	33249524	.	-	1	Parent=Os01t0784700-00
Chr01	irgsp1_rep	CDS	33248961	33249272	.	-	0	Parent=Os01t0784700-00
Chr01	irgsp1_rep	three_prime_UTR	33248878	33248960	.	-	.	Parent=Os01t0784700-00
Chr01	irgsp1_rep	mRNA	33249052	33256570	.	+	.	ID=Os01t0784725-00;Name=Os01t0784725-00;Locus_id=Os01g0784725;Note=Hypothetical protein.;Transcript_evidence=tplb0048b10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0784725-00
Chr01	irgsp1_rep	five_prime_UTR	33249052	33249269	.	+	.	Parent=Os01t0784725-00
Chr01	irgsp1_rep	five_prime_UTR	33249371	33249524	.	+	.	Parent=Os01t0784725-00
Chr01	irgsp1_rep	five_prime_UTR	33249616	33249842	.	+	.	Parent=Os01t0784725-00
Chr01	irgsp1_rep	five_prime_UTR	33249928	33250150	.	+	.	Parent=Os01t0784725-00
Chr01	irgsp1_rep	five_prime_UTR	33250374	33250567	.	+	.	Parent=Os01t0784725-00
Chr01	irgsp1_rep	five_prime_UTR	33250690	33250818	.	+	.	Parent=Os01t0784725-00
Chr01	irgsp1_rep	five_prime_UTR	33255152	33255689	.	+	.	Parent=Os01t0784725-00
Chr01	irgsp1_rep	CDS	33255690	33255703	.	+	0	Parent=Os01t0784725-00
Chr01	irgsp1_rep	CDS	33255819	33256570	.	+	1	Parent=Os01t0784725-00
Chr01	irgsp1_rep	mRNA	33264144	33264767	.	-	.	ID=Os01t0784750-00;Name=Os01t0784750-00;Locus_id=Os01g0784750;Note=Non-protein coding transcript.;Transcript_evidence=CT829174 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os01t0784750-00
Chr01	irgsp1_rep	exon	33264144	33264767	.	-	.	Parent=Os01t0784750-00
Chr01	irgsp1_rep	mRNA	33264366	33268325	.	+	.	ID=Os01t0784800-01;Name=Os01t0784800-01;Locus_id=Os01g0784800;Note=Flavodoxin/nitric oxide synthase domain containing protein.;Transcript_evidence=AK059820 (DDBJ%2C Best hit),AK104580 (DDBJ%2C Best hit);ORF_evidence=B6TFN1 (UniProt);GO=Biological Process: negative regulation of transcription%2C DNA-dependent (GO:0045892),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=NADPH-dependent FMN reductase (IPR005025),Flavodoxin/nitric oxide synthase (IPR008254),Flavoprotein WrbA (IPR010089);NIAS_FLcDNA=006-205-D02,006-307-B10;TENOR=Os01t0784800-01
Chr01	irgsp1_rep	five_prime_UTR	33264366	33264443	.	+	.	Parent=Os01t0784800-01
Chr01	irgsp1_rep	CDS	33264444	33264466	.	+	0	Parent=Os01t0784800-01
Chr01	irgsp1_rep	CDS	33266553	33266646	.	+	1	Parent=Os01t0784800-01
Chr01	irgsp1_rep	CDS	33267420	33267682	.	+	0	Parent=Os01t0784800-01
Chr01	irgsp1_rep	CDS	33267791	33268022	.	+	1	Parent=Os01t0784800-01
Chr01	irgsp1_rep	three_prime_UTR	33268023	33268325	.	+	.	Parent=Os01t0784800-01
Chr01	irgsp1_rep	mRNA	33266553	33268245	.	-	.	ID=Os01t0784833-00;Name=Os01t0784833-00;Locus_id=Os01g0784833;Note=Hypothetical gene.;Transcript_evidence=BT017374 (DDBJ);ORF_evidence=C0HGI0 (UniProt);TENOR=Os01t0784833-00
Chr01	irgsp1_rep	five_prime_UTR	33268032	33268245	.	-	.	Parent=Os01t0784833-00
Chr01	irgsp1_rep	CDS	33267806	33268031	.	-	0	Parent=Os01t0784833-00
Chr01	irgsp1_rep	CDS	33267418	33267694	.	-	2	Parent=Os01t0784833-00
Chr01	irgsp1_rep	CDS	33266611	33266644	.	-	1	Parent=Os01t0784833-00
Chr01	irgsp1_rep	three_prime_UTR	33266553	33266610	.	-	.	Parent=Os01t0784833-00
Chr01	irgsp1_rep	mRNA	33272134	33274419	.	-	.	ID=Os01t0784900-00;Name=Os01t0784900-00;Locus_id=Os01g0784900;Oryzabase Gene Symbol Synonym(s)=OsbHLH069;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 069;Note=Conserved hypothetical protein.;Transcript_evidence=EU969801 (DDBJ);ORF_evidence=NP_001044465.2 (RefSeq);Oryzabase=15356;TENOR=Os01t0784900-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	33274309	33274419	.	-	.	Parent=Os01t0784900-00
Chr01	irgsp1_rep	CDS	33274055	33274308	.	-	0	Parent=Os01t0784900-00
Chr01	irgsp1_rep	CDS	33273450	33273959	.	-	1	Parent=Os01t0784900-00
Chr01	irgsp1_rep	CDS	33273324	33273324	.	-	1	Parent=Os01t0784900-00
Chr01	irgsp1_rep	three_prime_UTR	33273253	33273323	.	-	.	Parent=Os01t0784900-00
Chr01	irgsp1_rep	three_prime_UTR	33272994	33273059	.	-	.	Parent=Os01t0784900-00
Chr01	irgsp1_rep	three_prime_UTR	33272788	33272853	.	-	.	Parent=Os01t0784900-00
Chr01	irgsp1_rep	three_prime_UTR	33272647	33272703	.	-	.	Parent=Os01t0784900-00
Chr01	irgsp1_rep	three_prime_UTR	33272378	33272544	.	-	.	Parent=Os01t0784900-00
Chr01	irgsp1_rep	three_prime_UTR	33272134	33272260	.	-	.	Parent=Os01t0784900-00
Chr01	irgsp1_rep	mRNA	33302721	33303613	.	+	.	ID=Os01t0785300-02;Name=Os01t0785300-02;Locus_id=Os01g0785300;Note=Hypothetical protein.;Transcript_evidence=AK065434 (DDBJ%2C Best hit),AK109546 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013022N21,002-120-E07;Expression=AK065434;TENOR=Os01t0785300-02;KEGG=Os01t0785300-02
Chr01	irgsp1_rep	five_prime_UTR	33302721	33302878	.	+	.	Parent=Os01t0785300-02
Chr01	irgsp1_rep	CDS	33302879	33303379	.	+	0	Parent=Os01t0785300-02
Chr01	irgsp1_rep	three_prime_UTR	33303380	33303613	.	+	.	Parent=Os01t0785300-02
Chr01	irgsp1_rep	mRNA	33308448	33310933	.	+	.	ID=Os01t0785400-01;Name=Os01t0785400-01;Locus_id=Os01g0785400;CGSNL Gene Symbol=LC1;CGSNL Gene Name=LEAF INCLINATION 1;Oryzabase Gene Symbol Synonym(s)=OsGH3-1%2C GH3-1%2C OsGH3.1%2C GH3.1%2C OsLC1;Oryzabase Gene Name Synonym(s)=LEAF INCLINATION1;Note=GH3 auxin-responsive promoter family protein.;Transcript_evidence=AK063368 (DDBJ%2C Best hit);ORF_evidence=XP_002319260.1 (RefSeq);InterPro=GH3 auxin-responsive promoter (IPR004993);NIAS_FLcDNA=001-114-D12;Oryzabase=11622;Expression=AK063368;TENOR=Os01t0785400-01;KEGG=Os01t0785400-01
Chr01	irgsp1_rep	five_prime_UTR	33308448	33308591	.	+	.	Parent=Os01t0785400-01
Chr01	irgsp1_rep	CDS	33308592	33308917	.	+	0	Parent=Os01t0785400-01
Chr01	irgsp1_rep	CDS	33309060	33309958	.	+	1	Parent=Os01t0785400-01
Chr01	irgsp1_rep	CDS	33310069	33310676	.	+	2	Parent=Os01t0785400-01
Chr01	irgsp1_rep	three_prime_UTR	33310677	33310933	.	+	.	Parent=Os01t0785400-01
Chr01	irgsp1_rep	mRNA	33310052	33310601	.	-	.	ID=Os01t0785500-00;Name=Os01t0785500-00;Locus_id=Os01g0785500;Note=Hypothetical protein.;Transcript_evidence=EU946797 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0785500-00
Chr01	irgsp1_rep	CDS	33310052	33310601	.	-	0	Parent=Os01t0785500-00
Chr01	irgsp1_rep	mRNA	33317043	33317912	.	-	.	ID=Os01t0785600-01;Name=Os01t0785600-01;Locus_id=Os01g0785600;Note=Methyltransferase type 11 domain containing protein.;Transcript_evidence=AK111308 (DDBJ%2C Best hit);ORF_evidence=B8AAG6 (UniProt);NIAS_FLcDNA=002-181-B12;Expression=AK111308;TENOR=Os01t0785600-01;KEGG=Os01t0785600-01
Chr01	irgsp1_rep	five_prime_UTR	33317885	33317912	.	-	.	Parent=Os01t0785600-01
Chr01	irgsp1_rep	CDS	33317168	33317884	.	-	0	Parent=Os01t0785600-01
Chr01	irgsp1_rep	three_prime_UTR	33317043	33317167	.	-	.	Parent=Os01t0785600-01
Chr01	irgsp1_rep	mRNA	33318039	33322908	.	+	.	ID=Os01t0785700-01;Name=Os01t0785700-01;Locus_id=Os01g0785700;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK102081 (DDBJ%2C Best hit);ORF_evidence=Q8H219 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033082K10;Expression=AK102081;TENOR=Os01t0785700-01;KEGG=Os01t0785700-01
Chr01	irgsp1_rep	five_prime_UTR	33318039	33318088	.	+	.	Parent=Os01t0785700-01
Chr01	irgsp1_rep	CDS	33318089	33319393	.	+	0	Parent=Os01t0785700-01
Chr01	irgsp1_rep	three_prime_UTR	33319394	33319436	.	+	.	Parent=Os01t0785700-01
Chr01	irgsp1_rep	three_prime_UTR	33321383	33321541	.	+	.	Parent=Os01t0785700-01
Chr01	irgsp1_rep	three_prime_UTR	33322388	33322908	.	+	.	Parent=Os01t0785700-01
Chr01	irgsp1_rep	mRNA	33318057	33321777	.	+	.	ID=Os01t0785700-02;Name=Os01t0785700-02;Locus_id=Os01g0785700;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK100774 (DDBJ%2C Best hit);ORF_evidence=Q8H219 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J023120B17;Expression=AK100774;TENOR=Os01t0785700-02;KEGG=Os01t0785700-02
Chr01	irgsp1_rep	five_prime_UTR	33318057	33318088	.	+	.	Parent=Os01t0785700-02
Chr01	irgsp1_rep	CDS	33318089	33319393	.	+	0	Parent=Os01t0785700-02
Chr01	irgsp1_rep	three_prime_UTR	33319394	33319436	.	+	.	Parent=Os01t0785700-02
Chr01	irgsp1_rep	three_prime_UTR	33321383	33321777	.	+	.	Parent=Os01t0785700-02
Chr01	irgsp1_rep	mRNA	33329637	33331935	.	-	.	ID=Os01t0785900-01;Name=Os01t0785900-01;Locus_id=Os01g0785900;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK071014 (DDBJ%2C Best hit);ORF_evidence=NP_001151870.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J023079O17;TENOR=Os01t0785900-01
Chr01	irgsp1_rep	five_prime_UTR	33331757	33331935	.	-	.	Parent=Os01t0785900-01
Chr01	irgsp1_rep	CDS	33330955	33331756	.	-	0	Parent=Os01t0785900-01
Chr01	irgsp1_rep	CDS	33329693	33330348	.	-	2	Parent=Os01t0785900-01
Chr01	irgsp1_rep	three_prime_UTR	33329637	33329692	.	-	.	Parent=Os01t0785900-01
Chr01	irgsp1_rep	mRNA	33329638	33331819	.	-	.	ID=Os01t0785900-02;Name=Os01t0785900-02;Locus_id=Os01g0785900;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK104311 (DDBJ%2C Best hit);ORF_evidence=NP_001151870.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=001-017-D01;TENOR=Os01t0785900-02
Chr01	irgsp1_rep	five_prime_UTR	33331757	33331819	.	-	.	Parent=Os01t0785900-02
Chr01	irgsp1_rep	CDS	33330955	33331756	.	-	0	Parent=Os01t0785900-02
Chr01	irgsp1_rep	CDS	33329693	33330348	.	-	2	Parent=Os01t0785900-02
Chr01	irgsp1_rep	three_prime_UTR	33329638	33329692	.	-	.	Parent=Os01t0785900-02
Chr01	irgsp1_rep	mRNA	33329681	33330583	.	+	.	ID=Os01t0786000-01;Name=Os01t0786000-01;Locus_id=Os01g0786000;Note=ABC transporter%2C conserved site domain containing protein.;Transcript_evidence=AK062500 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-104-A08;Expression=AK062500;TENOR=Os01t0786000-01;KEGG=Os01t0786000-01
Chr01	irgsp1_rep	CDS	33329681	33330436	.	+	0	Parent=Os01t0786000-01
Chr01	irgsp1_rep	three_prime_UTR	33330437	33330583	.	+	.	Parent=Os01t0786000-01
Chr01	irgsp1_rep	mRNA	33350154	33351195	.	-	.	ID=Os01t0786500-00;Name=Os01t0786500-00;Locus_id=Os01g0786500;CGSNL Gene Symbol=UCL1;CGSNL Gene Name=UCLACYANIN-LIKE PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsUCL1;Oryzabase Gene Name Synonym(s)=uclacyanin-like protein 1;Note=Similar to early nodulin 20.;Transcript_evidence=AK248720 (DDBJ);ORF_evidence=NP_001148734.1 (RefSeq);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Blue (type 1) copper domain (IPR000923),Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);Oryzabase=9750;TENOR=Os01t0786500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	33350967	33351195	.	-	0	Parent=Os01t0786500-00
Chr01	irgsp1_rep	CDS	33350245	33350828	.	-	2	Parent=Os01t0786500-00
Chr01	irgsp1_rep	three_prime_UTR	33350154	33350244	.	-	.	Parent=Os01t0786500-00
Chr01	irgsp1_rep	mRNA	33359447	33361543	.	+	.	ID=Os01t0786601-01;Name=Os01t0786601-01;Locus_id=Os01g0786601;Note=Hypothetical gene.;Transcript_evidence=AK241044 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065061D03;TENOR=Os01t0786601-01;KEGG=Os01t0786601-01
Chr01	irgsp1_rep	five_prime_UTR	33359447	33359954	.	+	.	Parent=Os01t0786601-01
Chr01	irgsp1_rep	five_prime_UTR	33360058	33360207	.	+	.	Parent=Os01t0786601-01
Chr01	irgsp1_rep	five_prime_UTR	33360286	33360426	.	+	.	Parent=Os01t0786601-01
Chr01	irgsp1_rep	five_prime_UTR	33360858	33360884	.	+	.	Parent=Os01t0786601-01
Chr01	irgsp1_rep	CDS	33360885	33361370	.	+	0	Parent=Os01t0786601-01
Chr01	irgsp1_rep	three_prime_UTR	33361371	33361543	.	+	.	Parent=Os01t0786601-01
Chr01	irgsp1_rep	mRNA	33359554	33361633	.	-	.	ID=Os01t0786700-00;Name=Os01t0786700-00;Locus_id=Os01g0786700;Note=Protein of unknown function DUF81 domain containing protein.;Transcript_evidence=CT834914 (DDBJ%2C Best hit);ORF_evidence=Q5ZAL4 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Protein of unknown function DUF81 (IPR002781);TENOR=Os01t0786700-00;KEGG=Os01t0786700-00
Chr01	irgsp1_rep	five_prime_UTR	33361452	33361633	.	-	.	Parent=Os01t0786700-00
Chr01	irgsp1_rep	CDS	33360858	33361451	.	-	0	Parent=Os01t0786700-00
Chr01	irgsp1_rep	CDS	33360286	33360426	.	-	0	Parent=Os01t0786700-00
Chr01	irgsp1_rep	CDS	33360058	33360207	.	-	0	Parent=Os01t0786700-00
Chr01	irgsp1_rep	CDS	33359646	33359954	.	-	0	Parent=Os01t0786700-00
Chr01	irgsp1_rep	three_prime_UTR	33359554	33359645	.	-	.	Parent=Os01t0786700-00
Chr01	irgsp1_rep	mRNA	33364391	33367253	.	-	.	ID=Os01t0786800-01;Name=Os01t0786800-01;Locus_id=Os01g0786800;Note=Protein of unknown function DUF81 domain containing protein.;Transcript_evidence=AK061235 (DDBJ%2C Best hit);ORF_evidence=NP_001044474.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Protein of unknown function DUF81 (IPR002781);NIAS_FLcDNA=006-211-B06;TENOR=Os01t0786800-01;KEGG=Os01t0786800-01
Chr01	irgsp1_rep	CDS	33366549	33367253	.	-	0	Parent=Os01t0786800-01
Chr01	irgsp1_rep	CDS	33365113	33365253	.	-	0	Parent=Os01t0786800-01
Chr01	irgsp1_rep	CDS	33364877	33365026	.	-	0	Parent=Os01t0786800-01
Chr01	irgsp1_rep	CDS	33364431	33364739	.	-	0	Parent=Os01t0786800-01
Chr01	irgsp1_rep	three_prime_UTR	33364391	33364430	.	-	.	Parent=Os01t0786800-01
Chr01	irgsp1_rep	mRNA	33368985	33374621	.	-	.	ID=Os01t0786900-01;Name=Os01t0786900-01;Locus_id=Os01g0786900;CGSNL Gene Symbol=ATG18E;CGSNL Gene Name=AUTOPHAGY ASSOCIATED GENE 18E;Oryzabase Gene Symbol Synonym(s)=OsATG18e%2C OsWD40-27;Oryzabase Gene Name Synonym(s)=autophagy 18e;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK101857 (DDBJ%2C Best hit);ORF_evidence=A2WVV0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40 repeat%2C subgroup (IPR019781),Breast carcinoma amplified sequence 3 (IPR022175);NIAS_FLcDNA=J033069O17;Oryzabase=9664;Expression=AK101857;TENOR=Os01t0786900-01;KEGG=Os01t0786900-01
Chr01	irgsp1_rep	five_prime_UTR	33374125	33374621	.	-	.	Parent=Os01t0786900-01
Chr01	irgsp1_rep	CDS	33373939	33374124	.	-	0	Parent=Os01t0786900-01
Chr01	irgsp1_rep	CDS	33372693	33373154	.	-	0	Parent=Os01t0786900-01
Chr01	irgsp1_rep	CDS	33372197	33372613	.	-	0	Parent=Os01t0786900-01
Chr01	irgsp1_rep	CDS	33371225	33371461	.	-	0	Parent=Os01t0786900-01
Chr01	irgsp1_rep	CDS	33370325	33371152	.	-	0	Parent=Os01t0786900-01
Chr01	irgsp1_rep	CDS	33370051	33370217	.	-	0	Parent=Os01t0786900-01
Chr01	irgsp1_rep	CDS	33369552	33369867	.	-	1	Parent=Os01t0786900-01
Chr01	irgsp1_rep	three_prime_UTR	33369534	33369551	.	-	.	Parent=Os01t0786900-01
Chr01	irgsp1_rep	three_prime_UTR	33368985	33369267	.	-	.	Parent=Os01t0786900-01
Chr01	irgsp1_rep	mRNA	33382428	33384487	.	-	.	ID=Os01t0787000-01;Name=Os01t0787000-01;Locus_id=Os01g0787000;Oryzabase Gene Symbol Synonym(s)=prx19;Oryzabase Gene Name Synonym(s)=class III peroxidase 19;Note=Similar to Peroxidase (EC 1.11.1.7).;Transcript_evidence=AK101743 (DDBJ%2C Best hit);ORF_evidence=NP_001152239.1 (RefSeq);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793);NIAS_FLcDNA=J033061N02;Oryzabase=14546;Expression=AK101743;TENOR=Os01t0787000-01;KEGG=Os01t0787000-01 (EC:1.11.1.7)
Chr01	irgsp1_rep	five_prime_UTR	33384185	33384487	.	-	.	Parent=Os01t0787000-01
Chr01	irgsp1_rep	CDS	33383948	33384184	.	-	0	Parent=Os01t0787000-01
Chr01	irgsp1_rep	CDS	33383590	33383775	.	-	0	Parent=Os01t0787000-01
Chr01	irgsp1_rep	CDS	33383308	33383473	.	-	0	Parent=Os01t0787000-01
Chr01	irgsp1_rep	CDS	33382754	33383175	.	-	2	Parent=Os01t0787000-01
Chr01	irgsp1_rep	three_prime_UTR	33382428	33382753	.	-	.	Parent=Os01t0787000-01
Chr01	irgsp1_rep	mRNA	33382440	33384408	.	-	.	ID=Os01t0787000-02;Name=Os01t0787000-02;Locus_id=Os01g0787000;Oryzabase Gene Symbol Synonym(s)=prx19;Oryzabase Gene Name Synonym(s)=class III peroxidase 19;Note=Similar to peroxidase 56.;Transcript_evidence=AK109348 (DDBJ%2C Best hit);ORF_evidence=NP_001152239.1 (RefSeq);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255);NIAS_FLcDNA=006-204-A09;Oryzabase=14546;TENOR=Os01t0787000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	33384185	33384408	.	-	.	Parent=Os01t0787000-02
Chr01	irgsp1_rep	CDS	33383837	33384184	.	-	0	Parent=Os01t0787000-02
Chr01	irgsp1_rep	three_prime_UTR	33382440	33383836	.	-	.	Parent=Os01t0787000-02
Chr01	irgsp1_rep	mRNA	33382772	33384150	.	+	.	ID=Os01t0787101-00;Name=Os01t0787101-00;Locus_id=Os01g0787101;Note=Hypothetical protein.;Transcript_evidence=tplb0038a01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0787101-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	33382772	33383224	.	+	0	Parent=Os01t0787101-00
Chr01	irgsp1_rep	three_prime_UTR	33383225	33383242	.	+	.	Parent=Os01t0787101-00
Chr01	irgsp1_rep	three_prime_UTR	33383382	33383581	.	+	.	Parent=Os01t0787101-00
Chr01	irgsp1_rep	three_prime_UTR	33383878	33384150	.	+	.	Parent=Os01t0787101-00
Chr01	irgsp1_rep	mRNA	33389691	33391291	.	+	.	ID=Os01t0787300-01;Name=Os01t0787300-01;Locus_id=Os01g0787300;Note=Hypothetical conserved gene.;Transcript_evidence=AK241083 (DDBJ%2C Best hit);ORF_evidence=Q5ZAX5 (UniProt);NIAS_FLcDNA=J065073I21;TENOR=Os01t0787300-01;KEGG=Os01t0787300-01
Chr01	irgsp1_rep	five_prime_UTR	33389691	33389924	.	+	.	Parent=Os01t0787300-01
Chr01	irgsp1_rep	CDS	33389925	33390428	.	+	0	Parent=Os01t0787300-01
Chr01	irgsp1_rep	three_prime_UTR	33390429	33391291	.	+	.	Parent=Os01t0787300-01
Chr01	irgsp1_rep	mRNA	33392410	33395692	.	+	.	ID=Os01t0787400-01;Name=Os01t0787400-01;Locus_id=Os01g0787400;Note=Conserved hypothetical protein.;Transcript_evidence=AK061223 (DDBJ%2C Best hit);ORF_evidence=A2ZYJ4 (UniProt);NIAS_FLcDNA=006-210-F09;TENOR=Os01t0787400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	33392410	33392683	.	+	.	Parent=Os01t0787400-01
Chr01	irgsp1_rep	CDS	33392684	33392872	.	+	0	Parent=Os01t0787400-01
Chr01	irgsp1_rep	CDS	33392955	33393030	.	+	0	Parent=Os01t0787400-01
Chr01	irgsp1_rep	CDS	33394066	33394237	.	+	2	Parent=Os01t0787400-01
Chr01	irgsp1_rep	CDS	33395360	33395441	.	+	1	Parent=Os01t0787400-01
Chr01	irgsp1_rep	three_prime_UTR	33395442	33395692	.	+	.	Parent=Os01t0787400-01
Chr01	irgsp1_rep	mRNA	33409655	33415562	.	+	.	ID=Os01t0787600-01;Name=Os01t0787600-01;Locus_id=Os01g0787600;Oryzabase Gene Symbol Synonym(s)=OsPOP4%2C POP4;Oryzabase Gene Name Synonym(s)=Prolyl Oligopeptidase 4%2C PROLYL OLIGOPEPTIDASE 4;Note=Similar to Salicylic acid-binding protein 2.;Transcript_evidence=AK061058 (DDBJ%2C Best hit);ORF_evidence=Q6RYA0 (UniProt);NIAS_FLcDNA=006-205-H08;Oryzabase=20014;Expression=AK061058;TENOR=Os01t0787600-01;KEGG=Os01t0787600-01
Chr01	irgsp1_rep	five_prime_UTR	33409655	33409712	.	+	.	Parent=Os01t0787600-01
Chr01	irgsp1_rep	CDS	33409713	33410087	.	+	0	Parent=Os01t0787600-01
Chr01	irgsp1_rep	CDS	33410375	33410509	.	+	0	Parent=Os01t0787600-01
Chr01	irgsp1_rep	CDS	33415058	33415339	.	+	0	Parent=Os01t0787600-01
Chr01	irgsp1_rep	three_prime_UTR	33415340	33415562	.	+	.	Parent=Os01t0787600-01
Chr01	irgsp1_rep	mRNA	33412211	33415502	.	+	.	ID=Os01t0787600-02;Name=Os01t0787600-02;Locus_id=Os01g0787600;Oryzabase Gene Symbol Synonym(s)=OsPOP4%2C POP4;Oryzabase Gene Name Synonym(s)=Prolyl Oligopeptidase 4%2C PROLYL OLIGOPEPTIDASE 4;Note=Similar to Protein S.;Transcript_evidence=AK121948 (DDBJ%2C Best hit);ORF_evidence=Q5XLS1 (UniProt);NIAS_FLcDNA=J033107J04;Oryzabase=20014;Expression=AK121948;TENOR=Os01t0787600-02;KEGG=Os01t0787600-02 (EC:3.1.1.78)
Chr01	irgsp1_rep	five_prime_UTR	33412211	33415021	.	+	.	Parent=Os01t0787600-02
Chr01	irgsp1_rep	CDS	33415022	33415339	.	+	0	Parent=Os01t0787600-02
Chr01	irgsp1_rep	three_prime_UTR	33415340	33415502	.	+	.	Parent=Os01t0787600-02
Chr01	irgsp1_rep	mRNA	33448517	33449043	.	-	.	ID=Os01t0788001-00;Name=Os01t0788001-00;Locus_id=Os01g0788001;Note=Hypothetical gene.;Transcript_evidence=BT016844 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0788001-00
Chr01	irgsp1_rep	CDS	33448984	33449043	.	-	0	Parent=Os01t0788001-00
Chr01	irgsp1_rep	CDS	33448517	33448847	.	-	0	Parent=Os01t0788001-00
Chr01	irgsp1_rep	mRNA	33448396	33449269	.	+	.	ID=Os01t0788200-01;Name=Os01t0788200-01;Locus_id=Os01g0788200;Note=Nuclear transport factor 2 domain containing protein.;Transcript_evidence=AK073030 (DDBJ%2C Best hit),AK098941 (DDBJ%2C Best hit);ORF_evidence=B3TLR5 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: intracellular (GO:0005622);InterPro=Nuclear transport factor 2 (IPR002075),Nuclear transport factor 2%2C Eukaryote (IPR018222);NIAS_FLcDNA=J023144D17,J013046E12;TENOR=Os01t0788200-01
Chr01	irgsp1_rep	five_prime_UTR	33448396	33448472	.	+	.	Parent=Os01t0788200-01
Chr01	irgsp1_rep	CDS	33448473	33448838	.	+	0	Parent=Os01t0788200-01
Chr01	irgsp1_rep	CDS	33448963	33449037	.	+	0	Parent=Os01t0788200-01
Chr01	irgsp1_rep	three_prime_UTR	33449038	33449269	.	+	.	Parent=Os01t0788200-01
Chr01	irgsp1_rep	mRNA	33453435	33460079	.	+	.	ID=Os01t0788400-01;Name=Os01t0788400-01;Locus_id=Os01g0788400;RAP-DB Gene Symbol Synonym(s)=OsPME1;RAP-DB Gene Name Synonym(s)=pectin methylesterase 1;CGSNL Gene Symbol=PME6;CGSNL Gene Name=PECTIN METHYLESTERASE 6;Oryzabase Gene Symbol Synonym(s)=OsPME6%2C OsPME1;Oryzabase Gene Name Synonym(s)=pectin methylesterase 6;Note=Pectin methylesterase%2C Leaf senescence regulation;Transcript_evidence=AK109763,AK120977;ORF_evidence=Q5ZAW1;GO=Biological Process: cell wall modification (GO:0042545),Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Invertase/pectin methylesterase inhibitor domain superfamily (IPR035513),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),Pectinesterase inhibitor domain (IPR006501),Pectinesterase%2C catalytic (IPR000070),Pectinesterase%2C Tyr active site (IPR018040),Pectinesterase%2C Asp active site (IPR033131);NIAS_FLcDNA=002-146-H03,J023041N03;Manual Curation=October 13%2C 2020;Literature_PMID=27477683;Oryzabase=13170;TENOR=Os01t0788400-01
Chr01	irgsp1_rep	five_prime_UTR	33453435	33453491	.	+	.	Parent=Os01t0788400-01
Chr01	irgsp1_rep	CDS	33453492	33454437	.	+	0	Parent=Os01t0788400-01
Chr01	irgsp1_rep	CDS	33459224	33459918	.	+	2	Parent=Os01t0788400-01
Chr01	irgsp1_rep	three_prime_UTR	33459919	33460079	.	+	.	Parent=Os01t0788400-01
Chr01	irgsp1_rep	mRNA	33454271	33459917	.	-	.	ID=Os01t0788451-00;Name=Os01t0788451-00;Locus_id=Os01g0788451;Note=Hypothetical protein.;Transcript_evidence=EU943103 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0788451-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	33459916	33459917	.	-	.	Parent=Os01t0788451-00
Chr01	irgsp1_rep	CDS	33459160	33459915	.	-	0	Parent=Os01t0788451-00
Chr01	irgsp1_rep	CDS	33454434	33454457	.	-	0	Parent=Os01t0788451-00
Chr01	irgsp1_rep	three_prime_UTR	33454271	33454433	.	-	.	Parent=Os01t0788451-00
Chr01	irgsp1_rep	mRNA	33460402	33463754	.	-	.	ID=Os01t0788500-01;Name=Os01t0788500-01;Locus_id=Os01g0788500;Note=Disease resistance protein domain containing protein.;Transcript_evidence=AK120325 (DDBJ%2C Best hit);ORF_evidence=A2WVV8 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013057M10;TENOR=Os01t0788500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	33463435	33463754	.	-	.	Parent=Os01t0788500-01
Chr01	irgsp1_rep	CDS	33460705	33463434	.	-	0	Parent=Os01t0788500-01
Chr01	irgsp1_rep	three_prime_UTR	33460402	33460704	.	-	.	Parent=Os01t0788500-01
Chr01	irgsp1_rep	mRNA	33468639	33470174	.	+	.	ID=Os01t0788700-00;Name=Os01t0788700-00;Locus_id=Os01g0788700;CGSNL Gene Symbol=ENODL5;CGSNL Gene Name=EARLY NODULIN LIKE PROTEIN 5;Oryzabase Gene Symbol Synonym(s)=OsENODL5;Oryzabase Gene Name Synonym(s)=early nodulin-like protein 5;Note=Cupredoxin domain containing protein.;Transcript_evidence=EU969353 (DDBJ);ORF_evidence=NP_001151061.1 (RefSeq);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);Oryzabase=9730;TENOR=Os01t0788700-00;KEGG=Os01t0788700-00
Chr01	irgsp1_rep	five_prime_UTR	33468639	33468643	.	+	.	Parent=Os01t0788700-00
Chr01	irgsp1_rep	CDS	33468644	33468848	.	+	0	Parent=Os01t0788700-00
Chr01	irgsp1_rep	CDS	33469571	33469992	.	+	2	Parent=Os01t0788700-00
Chr01	irgsp1_rep	three_prime_UTR	33469993	33470174	.	+	.	Parent=Os01t0788700-00
Chr01	irgsp1_rep	mRNA	33474895	33478422	.	+	.	ID=Os01t0788800-01;Name=Os01t0788800-01;Locus_id=Os01g0788800;CGSNL Gene Symbol=TF1;CGSNL Gene Name=TRANSCRIPTION FACTOR 1;Oryzabase Gene Symbol Synonym(s)=OSTF1(t)%2C OsTF1;Oryzabase Gene Name Synonym(s)=Oryza sativa transcription factor 1(t)%2C Homeobox-leucine zipper protein TF1%2C Homeodomain transcription factor TF1%2C HD-ZIP protein TF1%2C Protein TRANSCRIPTION FACTOR 1;Note=Similar to Isoform 2 of Homeobox-leucine zipper protein TF1.;Transcript_evidence=AK121338 (DDBJ%2C Best hit);ORF_evidence=Q5ZAY0-2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),Lipid-binding START (IPR002913),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Homeobox%2C conserved site (IPR017970);NIAS_FLcDNA=J023120G04;Oryzabase=2202;Expression=AK121338;TENOR=Os01t0788800-01;KEGG=Os01t0788800-01
Chr01	irgsp1_rep	five_prime_UTR	33474895	33475052	.	+	.	Parent=Os01t0788800-01
Chr01	irgsp1_rep	CDS	33475053	33475178	.	+	0	Parent=Os01t0788800-01
Chr01	irgsp1_rep	CDS	33475262	33475450	.	+	0	Parent=Os01t0788800-01
Chr01	irgsp1_rep	CDS	33475750	33476085	.	+	0	Parent=Os01t0788800-01
Chr01	irgsp1_rep	CDS	33476210	33476311	.	+	0	Parent=Os01t0788800-01
Chr01	irgsp1_rep	CDS	33476438	33476632	.	+	0	Parent=Os01t0788800-01
Chr01	irgsp1_rep	CDS	33476735	33476897	.	+	0	Parent=Os01t0788800-01
Chr01	irgsp1_rep	CDS	33477056	33477321	.	+	2	Parent=Os01t0788800-01
Chr01	irgsp1_rep	CDS	33477412	33477507	.	+	0	Parent=Os01t0788800-01
Chr01	irgsp1_rep	CDS	33477602	33478018	.	+	0	Parent=Os01t0788800-01
Chr01	irgsp1_rep	three_prime_UTR	33478019	33478037	.	+	.	Parent=Os01t0788800-01
Chr01	irgsp1_rep	three_prime_UTR	33478145	33478422	.	+	.	Parent=Os01t0788800-01
Chr01	irgsp1_rep	mRNA	33477047	33478458	.	+	.	ID=Os01t0788800-02;Name=Os01t0788800-02;Locus_id=Os01g0788800;CGSNL Gene Symbol=TF1;CGSNL Gene Name=TRANSCRIPTION FACTOR 1;Oryzabase Gene Symbol Synonym(s)=OSTF1(t)%2C OsTF1;Oryzabase Gene Name Synonym(s)=Oryza sativa transcription factor 1(t)%2C Homeobox-leucine zipper protein TF1%2C Homeodomain transcription factor TF1%2C HD-ZIP protein TF1%2C Protein TRANSCRIPTION FACTOR 1;Note=Similar to Isoform 2 of Homeobox-leucine zipper protein TF1.;Transcript_evidence=AK059864 (DDBJ%2C Best hit);ORF_evidence=Q5ZAY0-2 (UniProt);NIAS_FLcDNA=006-207-C11;Oryzabase=2202;Expression=AK059864;TENOR=Os01t0788800-02;KEGG=Os01t0788800-02
Chr01	irgsp1_rep	five_prime_UTR	33477047	33477048	.	+	.	Parent=Os01t0788800-02
Chr01	irgsp1_rep	CDS	33477049	33477321	.	+	0	Parent=Os01t0788800-02
Chr01	irgsp1_rep	CDS	33477412	33477507	.	+	0	Parent=Os01t0788800-02
Chr01	irgsp1_rep	CDS	33477602	33478018	.	+	0	Parent=Os01t0788800-02
Chr01	irgsp1_rep	three_prime_UTR	33478019	33478037	.	+	.	Parent=Os01t0788800-02
Chr01	irgsp1_rep	three_prime_UTR	33478145	33478458	.	+	.	Parent=Os01t0788800-02
Chr01	irgsp1_rep	mRNA	33477564	33478422	.	+	.	ID=Os01t0788800-03;Name=Os01t0788800-03;Locus_id=Os01g0788800;CGSNL Gene Symbol=TF1;CGSNL Gene Name=TRANSCRIPTION FACTOR 1;Oryzabase Gene Symbol Synonym(s)=OSTF1(t)%2C OsTF1;Oryzabase Gene Name Synonym(s)=Oryza sativa transcription factor 1(t)%2C Homeobox-leucine zipper protein TF1%2C Homeodomain transcription factor TF1%2C HD-ZIP protein TF1%2C Protein TRANSCRIPTION FACTOR 1;Note=Similar to Isoform 2 of Homeobox-leucine zipper protein TF1.;Transcript_evidence=AK071723 (DDBJ%2C Best hit);ORF_evidence=Q5ZAY0-2 (UniProt);NIAS_FLcDNA=J023110O18;Oryzabase=2202;Expression=AK071723;TENOR=Os01t0788800-03;KEGG=Os01t0788800-03
Chr01	irgsp1_rep	five_prime_UTR	33477564	33477583	.	+	.	Parent=Os01t0788800-03
Chr01	irgsp1_rep	CDS	33477584	33478018	.	+	0	Parent=Os01t0788800-03
Chr01	irgsp1_rep	three_prime_UTR	33478019	33478037	.	+	.	Parent=Os01t0788800-03
Chr01	irgsp1_rep	three_prime_UTR	33478145	33478422	.	+	.	Parent=Os01t0788800-03
Chr01	irgsp1_rep	mRNA	33475054	33477971	.	-	.	ID=Os01t0788850-00;Name=Os01t0788850-00;Locus_id=Os01g0788850;Note=Hypothetical protein.;Transcript_evidence=tplb0029h22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0788850-00
Chr01	irgsp1_rep	five_prime_UTR	33477581	33477971	.	-	.	Parent=Os01t0788850-00
Chr01	irgsp1_rep	five_prime_UTR	33477395	33477500	.	-	.	Parent=Os01t0788850-00
Chr01	irgsp1_rep	five_prime_UTR	33477186	33477303	.	-	.	Parent=Os01t0788850-00
Chr01	irgsp1_rep	CDS	33477063	33477185	.	-	0	Parent=Os01t0788850-00
Chr01	irgsp1_rep	CDS	33476732	33476908	.	-	0	Parent=Os01t0788850-00
Chr01	irgsp1_rep	CDS	33476591	33476626	.	-	0	Parent=Os01t0788850-00
Chr01	irgsp1_rep	three_prime_UTR	33476436	33476590	.	-	.	Parent=Os01t0788850-00
Chr01	irgsp1_rep	three_prime_UTR	33476205	33476308	.	-	.	Parent=Os01t0788850-00
Chr01	irgsp1_rep	three_prime_UTR	33475772	33476083	.	-	.	Parent=Os01t0788850-00
Chr01	irgsp1_rep	three_prime_UTR	33475264	33475472	.	-	.	Parent=Os01t0788850-00
Chr01	irgsp1_rep	three_prime_UTR	33475054	33475185	.	-	.	Parent=Os01t0788850-00
Chr01	irgsp1_rep	mRNA	33478985	33481343	.	-	.	ID=Os01t0788900-01;Name=Os01t0788900-01;Locus_id=Os01g0788900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK105428 (DDBJ%2C Best hit);ORF_evidence=NP_177089.2 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-124-D06;Expression=AK105428;TENOR=Os01t0788900-01;KEGG=Os01t0788900-01
Chr01	irgsp1_rep	five_prime_UTR	33481343	33481343	.	-	.	Parent=Os01t0788900-01
Chr01	irgsp1_rep	CDS	33479330	33481342	.	-	0	Parent=Os01t0788900-01
Chr01	irgsp1_rep	three_prime_UTR	33478985	33479329	.	-	.	Parent=Os01t0788900-01
Chr01	irgsp1_rep	mRNA	33479023	33480924	.	-	.	ID=Os01t0788900-02;Name=Os01t0788900-02;Locus_id=Os01g0788900;Note=Similar to predicted protein.;Transcript_evidence=AK073287 (DDBJ%2C Best hit);ORF_evidence=NP_177089.2 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033028L06;Expression=AK073287;TENOR=Os01t0788900-02;KEGG=Os01t0788900-02
Chr01	irgsp1_rep	five_prime_UTR	33480923	33480924	.	-	.	Parent=Os01t0788900-02
Chr01	irgsp1_rep	CDS	33479330	33480922	.	-	0	Parent=Os01t0788900-02
Chr01	irgsp1_rep	three_prime_UTR	33479023	33479329	.	-	.	Parent=Os01t0788900-02
Chr01	irgsp1_rep	mRNA	33482291	33484203	.	-	.	ID=Os01t0788950-01;Name=Os01t0788950-01;Locus_id=Os01g0788950;Note=Similar to partner of Nob1.;Transcript_evidence=AK288815 (DDBJ%2C Best hit);ORF_evidence=NP_001149708.1 (RefSeq);GO=Molecular Function: RNA binding (GO:0003723);InterPro=K Homology (IPR004087),K Homology%2C type 1%2C subgroup (IPR018111);NIAS_FLcDNA=J090072I09;TENOR=Os01t0788950-01;KEGG=Os01t0788950-01
Chr01	irgsp1_rep	five_prime_UTR	33484190	33484203	.	-	.	Parent=Os01t0788950-01
Chr01	irgsp1_rep	CDS	33483950	33484189	.	-	0	Parent=Os01t0788950-01
Chr01	irgsp1_rep	CDS	33482601	33483023	.	-	0	Parent=Os01t0788950-01
Chr01	irgsp1_rep	three_prime_UTR	33482291	33482600	.	-	.	Parent=Os01t0788950-01
Chr01	irgsp1_rep	mRNA	33484803	33487848	.	-	.	ID=Os01t0789000-00;Name=Os01t0789000-00;Locus_id=Os01g0789000;Oryzabase Gene Symbol Synonym(s)=OsFbox044%2C OsFbox44%2C Os_F0491;Oryzabase Gene Name Synonym(s)=F-box protein 44;Note=Hypothetical conserved gene.;Transcript_evidence=AK333353 (DDBJ);ORF_evidence=Q5ZAX6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=16843;TENOR=Os01t0789000-00;KEGG=Os01t0789000-00
Chr01	irgsp1_rep	five_prime_UTR	33487690	33487848	.	-	.	Parent=Os01t0789000-00
Chr01	irgsp1_rep	five_prime_UTR	33486814	33486842	.	-	.	Parent=Os01t0789000-00
Chr01	irgsp1_rep	CDS	33485923	33486813	.	-	0	Parent=Os01t0789000-00
Chr01	irgsp1_rep	CDS	33485243	33485398	.	-	0	Parent=Os01t0789000-00
Chr01	irgsp1_rep	CDS	33485097	33485141	.	-	0	Parent=Os01t0789000-00
Chr01	irgsp1_rep	three_prime_UTR	33484803	33485096	.	-	.	Parent=Os01t0789000-00
Chr01	irgsp1_rep	mRNA	33489285	33492959	.	-	.	ID=Os01t0789100-01;Name=Os01t0789100-01;Locus_id=Os01g0789100;Note=CDP-alcohol phosphatidyltransferase family protein.;Transcript_evidence=AK069910 (DDBJ%2C Best hit);ORF_evidence=B6TPV7 (UniProt);GO=Biological Process: phospholipid biosynthetic process (GO:0008654),Cellular Component: membrane (GO:0016020),Molecular Function: phosphotransferase activity%2C for other substituted phosphate groups (GO:0016780);InterPro=CDP-alcohol phosphatidyltransferase (IPR000462);NIAS_FLcDNA=J023037H06;Expression=AK069910;TENOR=Os01t0789100-01;KEGG=Os01t0789100-01 (EC:2.7.8.-)
Chr01	irgsp1_rep	five_prime_UTR	33492902	33492959	.	-	.	Parent=Os01t0789100-01
Chr01	irgsp1_rep	CDS	33492441	33492901	.	-	0	Parent=Os01t0789100-01
Chr01	irgsp1_rep	CDS	33491296	33491362	.	-	1	Parent=Os01t0789100-01
Chr01	irgsp1_rep	CDS	33491123	33491197	.	-	0	Parent=Os01t0789100-01
Chr01	irgsp1_rep	CDS	33490998	33491049	.	-	0	Parent=Os01t0789100-01
Chr01	irgsp1_rep	CDS	33490667	33490752	.	-	2	Parent=Os01t0789100-01
Chr01	irgsp1_rep	CDS	33490511	33490585	.	-	0	Parent=Os01t0789100-01
Chr01	irgsp1_rep	CDS	33490332	33490426	.	-	0	Parent=Os01t0789100-01
Chr01	irgsp1_rep	CDS	33489979	33490057	.	-	1	Parent=Os01t0789100-01
Chr01	irgsp1_rep	three_prime_UTR	33489926	33489978	.	-	.	Parent=Os01t0789100-01
Chr01	irgsp1_rep	three_prime_UTR	33489285	33489813	.	-	.	Parent=Os01t0789100-01
Chr01	irgsp1_rep	mRNA	33494608	33496692	.	+	.	ID=Os01t0789200-01;Name=Os01t0789200-01;Locus_id=Os01g0789200;CGSNL Gene Symbol=RLCK45;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 45;Oryzabase Gene Symbol Synonym(s)=OsRLCK45;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 45;Note=Similar to Serine/threonine-protein kinase PBS1 (EC 2.7.1.37) (AvrPphB susceptible protein 1).;Transcript_evidence=AK070450 (DDBJ%2C Best hit),AK100639 (DDBJ%2C Best hit);ORF_evidence=Q6RS98 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023048N16,J023110F08;Oryzabase=18762;TENOR=Os01t0789200-01
Chr01	irgsp1_rep	five_prime_UTR	33494608	33494654	.	+	.	Parent=Os01t0789200-01
Chr01	irgsp1_rep	CDS	33494655	33494982	.	+	0	Parent=Os01t0789200-01
Chr01	irgsp1_rep	CDS	33495094	33495272	.	+	2	Parent=Os01t0789200-01
Chr01	irgsp1_rep	CDS	33495359	33495548	.	+	0	Parent=Os01t0789200-01
Chr01	irgsp1_rep	CDS	33495630	33496021	.	+	2	Parent=Os01t0789200-01
Chr01	irgsp1_rep	CDS	33496109	33496423	.	+	0	Parent=Os01t0789200-01
Chr01	irgsp1_rep	three_prime_UTR	33496424	33496692	.	+	.	Parent=Os01t0789200-01
Chr01	irgsp1_rep	mRNA	33533878	33534687	.	-	.	ID=Os01t0791033-00;Name=Os01t0791033-00;Locus_id=Os01g0791033;Note=Similar to ribulose-1%2C5-bisphosphate carboxylase/oxygenase large subunit.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_039391.1 (RefSeq);GO=Biological Process: carbon fixation (GO:0015977),Cellular Component: plastid (GO:0009536),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: ribulose-bisphosphate carboxylase activity (GO:0016984);InterPro=Ribulose bisphosphate carboxylase%2C large subunit%2C C-terminal (IPR000685);TENOR=Os01t0791033-00
Chr01	irgsp1_rep	CDS	33533878	33534687	.	-	0	Parent=Os01t0791033-00
Chr01	irgsp1_rep	mRNA	33495827	33496550	.	-	.	ID=Os01t0791151-00;Name=Os01t0791151-00;Locus_id=Os01g0791151;Note=Hypothetical gene.;Transcript_evidence=X57273 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0791151-00;KEGG=Os01t0791151-00
Chr01	irgsp1_rep	five_prime_UTR	33496304	33496550	.	-	.	Parent=Os01t0791151-00
Chr01	irgsp1_rep	CDS	33496116	33496303	.	-	0	Parent=Os01t0791151-00
Chr01	irgsp1_rep	CDS	33495928	33496033	.	-	1	Parent=Os01t0791151-00
Chr01	irgsp1_rep	three_prime_UTR	33495827	33495927	.	-	.	Parent=Os01t0791151-00
Chr01	irgsp1_rep	mRNA	33590636	33591674	.	-	.	ID=Os01t0793100-00;Name=Os01t0793100-00;Locus_id=Os01g0793100;Oryzabase Gene Name Synonym(s)=Polyphenol oxidase;Note=Similar to Polyphenol oxidase.;Transcript_evidence=AK372651 (DDBJ);ORF_evidence=Q6YHK5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Tyrosinase (IPR002227),Twin-arginine translocation pathway%2C signal sequence (IPR006311),Uncharacterised domain%2C di-copper centre (IPR008922);Oryzabase=18234;TENOR=Os01t0793100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	33591662	33591674	.	-	.	Parent=Os01t0793100-00
Chr01	irgsp1_rep	CDS	33590636	33591661	.	-	0	Parent=Os01t0793100-00
Chr01	irgsp1_rep	mRNA	33593744	33597017	.	+	.	ID=Os01t0793200-01;Name=Os01t0793200-01;Locus_id=Os01g0793200;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK071275 (DDBJ%2C Best hit);ORF_evidence=B6T4P4 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J023087D20;Expression=AK071275;TENOR=Os01t0793200-01;KEGG=Os01t0793200-01
Chr01	irgsp1_rep	five_prime_UTR	33593744	33593814	.	+	.	Parent=Os01t0793200-01
Chr01	irgsp1_rep	CDS	33593815	33594987	.	+	0	Parent=Os01t0793200-01
Chr01	irgsp1_rep	three_prime_UTR	33594988	33595011	.	+	.	Parent=Os01t0793200-01
Chr01	irgsp1_rep	three_prime_UTR	33596800	33597017	.	+	.	Parent=Os01t0793200-01
Chr01	irgsp1_rep	mRNA	33594279	33597339	.	+	.	ID=Os01t0793200-02;Name=Os01t0793200-02;Locus_id=Os01g0793200;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK059040 (DDBJ%2C Best hit);ORF_evidence=B6T4P4 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-021-D03;Expression=AK059040;TENOR=Os01t0793200-02;KEGG=Os01t0793200-02
Chr01	irgsp1_rep	five_prime_UTR	33594279	33594279	.	+	.	Parent=Os01t0793200-02
Chr01	irgsp1_rep	CDS	33594280	33594987	.	+	0	Parent=Os01t0793200-02
Chr01	irgsp1_rep	three_prime_UTR	33594988	33595011	.	+	.	Parent=Os01t0793200-02
Chr01	irgsp1_rep	three_prime_UTR	33596800	33596962	.	+	.	Parent=Os01t0793200-02
Chr01	irgsp1_rep	three_prime_UTR	33597051	33597339	.	+	.	Parent=Os01t0793200-02
Chr01	irgsp1_rep	mRNA	33601018	33605323	.	-	.	ID=Os01t0793300-01;Name=Os01t0793300-01;Locus_id=Os01g0793300;Note=Di-copper centre-containing domain containing protein.;Transcript_evidence=AK241303 (DDBJ%2C Best hit);ORF_evidence=NP_001147867.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Tyrosinase (IPR002227),Uncharacterised domain%2C di-copper centre (IPR008922);NIAS_FLcDNA=J065140J12;TENOR=Os01t0793300-01;KEGG=Os01t0793300-01
Chr01	irgsp1_rep	five_prime_UTR	33605261	33605323	.	-	.	Parent=Os01t0793300-01
Chr01	irgsp1_rep	CDS	33604319	33605260	.	-	0	Parent=Os01t0793300-01
Chr01	irgsp1_rep	three_prime_UTR	33603612	33604318	.	-	.	Parent=Os01t0793300-01
Chr01	irgsp1_rep	three_prime_UTR	33601018	33602193	.	-	.	Parent=Os01t0793300-01
Chr01	irgsp1_rep	mRNA	33609424	33614332	.	-	.	ID=Os01t0793500-01;Name=Os01t0793500-01;Locus_id=Os01g0793500;Note=Similar to mRNA%2C clone: RTFL01-05-M08.;Transcript_evidence=AK101086 (DDBJ%2C Best hit);ORF_evidence=E4MW90 (UniProt);NIAS_FLcDNA=J033024J15;Expression=AK101086;TENOR=Os01t0793500-01;KEGG=Os01t0793500-01
Chr01	irgsp1_rep	five_prime_UTR	33614269	33614332	.	-	.	Parent=Os01t0793500-01
Chr01	irgsp1_rep	CDS	33613912	33614268	.	-	0	Parent=Os01t0793500-01
Chr01	irgsp1_rep	CDS	33613201	33613341	.	-	0	Parent=Os01t0793500-01
Chr01	irgsp1_rep	CDS	33612749	33613114	.	-	0	Parent=Os01t0793500-01
Chr01	irgsp1_rep	CDS	33611679	33611924	.	-	0	Parent=Os01t0793500-01
Chr01	irgsp1_rep	CDS	33611347	33611439	.	-	0	Parent=Os01t0793500-01
Chr01	irgsp1_rep	CDS	33610143	33610343	.	-	0	Parent=Os01t0793500-01
Chr01	irgsp1_rep	CDS	33609673	33609888	.	-	0	Parent=Os01t0793500-01
Chr01	irgsp1_rep	three_prime_UTR	33609424	33609672	.	-	.	Parent=Os01t0793500-01
Chr01	irgsp1_rep	mRNA	33613903	33614397	.	+	.	ID=Os01t0793550-00;Name=Os01t0793550-00;Locus_id=Os01g0793550;Note=Hypothetical gene.;Transcript_evidence=EU947254 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0793550-00;KEGG=Os01t0793550-00
Chr01	irgsp1_rep	five_prime_UTR	33613903	33613917	.	+	.	Parent=Os01t0793550-00
Chr01	irgsp1_rep	CDS	33613918	33614370	.	+	0	Parent=Os01t0793550-00
Chr01	irgsp1_rep	three_prime_UTR	33614371	33614397	.	+	.	Parent=Os01t0793550-00
Chr01	irgsp1_rep	mRNA	33615614	33616258	.	-	.	ID=Os01t0793600-00;Name=Os01t0793600-00;Locus_id=Os01g0793600;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9ETP8 (UniProt);TENOR=Os01t0793600-00;KEGG=Os01t0793600-00
Chr01	irgsp1_rep	CDS	33615884	33616258	.	-	0	Parent=Os01t0793600-00
Chr01	irgsp1_rep	CDS	33615614	33615664	.	-	0	Parent=Os01t0793600-00
Chr01	irgsp1_rep	mRNA	33609385	33616266	.	+	.	ID=Os01t0793701-00;Name=Os01t0793701-00;Locus_id=Os01g0793701;Note=Hypothetical protein.;Transcript_evidence=tplb0042d04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0793701-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	33609385	33609889	.	+	.	Parent=Os01t0793701-00
Chr01	irgsp1_rep	five_prime_UTR	33610144	33610330	.	+	.	Parent=Os01t0793701-00
Chr01	irgsp1_rep	five_prime_UTR	33611330	33611422	.	+	.	Parent=Os01t0793701-00
Chr01	irgsp1_rep	five_prime_UTR	33611664	33611923	.	+	.	Parent=Os01t0793701-00
Chr01	irgsp1_rep	five_prime_UTR	33612748	33613110	.	+	.	Parent=Os01t0793701-00
Chr01	irgsp1_rep	five_prime_UTR	33613197	33613245	.	+	.	Parent=Os01t0793701-00
Chr01	irgsp1_rep	CDS	33613246	33613356	.	+	0	Parent=Os01t0793701-00
Chr01	irgsp1_rep	CDS	33615896	33616216	.	+	0	Parent=Os01t0793701-00
Chr01	irgsp1_rep	three_prime_UTR	33616217	33616266	.	+	.	Parent=Os01t0793701-00
Chr01	irgsp1_rep	mRNA	33618550	33619174	.	-	.	ID=Os01t0793800-01;Name=Os01t0793800-01;Locus_id=Os01g0793800;Note=Conserved hypothetical protein.;Transcript_evidence=AK111091 (DDBJ%2C Best hit);ORF_evidence=A2WVX7 (UniProt);NIAS_FLcDNA=002-175-G02;Expression=AK111091;TENOR=Os01t0793800-01;KEGG=Os01t0793800-01
Chr01	irgsp1_rep	five_prime_UTR	33619011	33619174	.	-	.	Parent=Os01t0793800-01
Chr01	irgsp1_rep	CDS	33618672	33619010	.	-	0	Parent=Os01t0793800-01
Chr01	irgsp1_rep	three_prime_UTR	33618550	33618671	.	-	.	Parent=Os01t0793800-01
Chr01	irgsp1_rep	mRNA	33625287	33626043	.	-	.	ID=Os01t0793900-01;Name=Os01t0793900-01;Locus_id=Os01g0793900;Note=Conserved hypothetical protein.;Transcript_evidence=AK062811 (DDBJ%2C Best hit);ORF_evidence=A2WVX8 (UniProt);NIAS_FLcDNA=001-107-E01;Expression=AK062811;TENOR=Os01t0793900-01;KEGG=Os01t0793900-01
Chr01	irgsp1_rep	five_prime_UTR	33625904	33626043	.	-	.	Parent=Os01t0793900-01
Chr01	irgsp1_rep	CDS	33625583	33625903	.	-	0	Parent=Os01t0793900-01
Chr01	irgsp1_rep	three_prime_UTR	33625287	33625582	.	-	.	Parent=Os01t0793900-01
Chr01	irgsp1_rep	mRNA	33629559	33630287	.	-	.	ID=Os01t0794100-01;Name=Os01t0794100-01;Locus_id=Os01g0794100;Note=Conserved hypothetical protein.;Transcript_evidence=AK062404 (DDBJ%2C Best hit);ORF_evidence=A2ZYL6 (UniProt);NIAS_FLcDNA=001-102-E06;TENOR=Os01t0794100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	33630286	33630287	.	-	.	Parent=Os01t0794100-01
Chr01	irgsp1_rep	CDS	33629827	33630285	.	-	0	Parent=Os01t0794100-01
Chr01	irgsp1_rep	three_prime_UTR	33629559	33629826	.	-	.	Parent=Os01t0794100-01
Chr01	irgsp1_rep	mRNA	33642080	33650929	.	+	.	ID=Os01t0794400-01;Name=Os01t0794400-01;Locus_id=Os01g0794400;Note=Thioredoxin domain 2 containing protein.;Transcript_evidence=AK122041 (DDBJ%2C Best hit);ORF_evidence=B6TNL1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: antioxidant activity (GO:0016209),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant (IPR000866),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=J033113J05;Expression=AK122041;TENOR=Os01t0794400-01;KEGG=Os01t0794400-01
Chr01	irgsp1_rep	five_prime_UTR	33642080	33642086	.	+	.	Parent=Os01t0794400-01
Chr01	irgsp1_rep	CDS	33642087	33642185	.	+	0	Parent=Os01t0794400-01
Chr01	irgsp1_rep	CDS	33643058	33643537	.	+	0	Parent=Os01t0794400-01
Chr01	irgsp1_rep	CDS	33650103	33650708	.	+	0	Parent=Os01t0794400-01
Chr01	irgsp1_rep	three_prime_UTR	33650709	33650929	.	+	.	Parent=Os01t0794400-01
Chr01	irgsp1_rep	mRNA	33651161	33655179	.	-	.	ID=Os01t0794500-00;Name=Os01t0794500-00;Locus_id=Os01g0794500;Note=Translation initiation factor SUI1 domain containing protein.;Transcript_evidence=CU406737 (DDBJ%2C Best hit);ORF_evidence=NP_001150984.1 (RefSeq);GO=Biological Process: translational initiation (GO:0006413),Molecular Function: translation initiation factor activity (GO:0003743);InterPro=Translation initiation factor SUI1 (IPR001950),Eukaryotic translation initiation factor SUI1 (IPR005874);TENOR=Os01t0794500-00;KEGG=Os01t0794500-00
Chr01	irgsp1_rep	five_prime_UTR	33655082	33655179	.	-	.	Parent=Os01t0794500-00
Chr01	irgsp1_rep	five_prime_UTR	33652215	33652281	.	-	.	Parent=Os01t0794500-00
Chr01	irgsp1_rep	CDS	33652178	33652214	.	-	0	Parent=Os01t0794500-00
Chr01	irgsp1_rep	CDS	33651657	33651868	.	-	2	Parent=Os01t0794500-00
Chr01	irgsp1_rep	CDS	33651511	33651564	.	-	0	Parent=Os01t0794500-00
Chr01	irgsp1_rep	CDS	33651389	33651433	.	-	0	Parent=Os01t0794500-00
Chr01	irgsp1_rep	three_prime_UTR	33651161	33651388	.	-	.	Parent=Os01t0794500-00
Chr01	irgsp1_rep	mRNA	33653500	33655173	.	+	.	ID=Os01t0794600-01;Name=Os01t0794600-01;Locus_id=Os01g0794600;Note=Hypothetical conserved gene.;Transcript_evidence=AK289169 (DDBJ%2C Best hit);ORF_evidence=Q65XQ7 (UniProt);NIAS_FLcDNA=J100010O11;TENOR=Os01t0794600-01;KEGG=Os01t0794600-01
Chr01	irgsp1_rep	five_prime_UTR	33653500	33653852	.	+	.	Parent=Os01t0794600-01
Chr01	irgsp1_rep	CDS	33653853	33654353	.	+	0	Parent=Os01t0794600-01
Chr01	irgsp1_rep	three_prime_UTR	33654354	33655173	.	+	.	Parent=Os01t0794600-01
Chr01	irgsp1_rep	mRNA	33655945	33656478	.	+	.	ID=Os01t0794650-00;Name=Os01t0794650-00;Locus_id=Os01g0794650;Note=Similar to Sodium/hydrogen exchanger family protein.;Transcript_evidence=BT086324 (DDBJ);ORF_evidence=Q2QYR3 (UniProt);TENOR=Os01t0794650-00
Chr01	irgsp1_rep	CDS	33655945	33656202	.	+	0	Parent=Os01t0794650-00
Chr01	irgsp1_rep	three_prime_UTR	33656203	33656478	.	+	.	Parent=Os01t0794650-00
Chr01	irgsp1_rep	mRNA	33659782	33663245	.	+	.	ID=Os01t0794800-01;Name=Os01t0794800-01;Locus_id=Os01g0794800;Note=Similar to Subtilase.;Transcript_evidence=AK063520 (DDBJ%2C Best hit);ORF_evidence=Q9FVC7 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);NIAS_FLcDNA=001-116-H07;Expression=AK063520;TENOR=Os01t0794800-01;KEGG=Os01t0794800-01
Chr01	irgsp1_rep	five_prime_UTR	33659782	33659796	.	+	.	Parent=Os01t0794800-01
Chr01	irgsp1_rep	CDS	33659797	33659886	.	+	0	Parent=Os01t0794800-01
Chr01	irgsp1_rep	CDS	33659961	33660052	.	+	0	Parent=Os01t0794800-01
Chr01	irgsp1_rep	CDS	33660225	33660322	.	+	1	Parent=Os01t0794800-01
Chr01	irgsp1_rep	CDS	33660500	33660655	.	+	2	Parent=Os01t0794800-01
Chr01	irgsp1_rep	CDS	33660751	33661370	.	+	2	Parent=Os01t0794800-01
Chr01	irgsp1_rep	CDS	33661463	33661536	.	+	0	Parent=Os01t0794800-01
Chr01	irgsp1_rep	CDS	33661647	33661898	.	+	1	Parent=Os01t0794800-01
Chr01	irgsp1_rep	CDS	33661992	33662109	.	+	1	Parent=Os01t0794800-01
Chr01	irgsp1_rep	CDS	33662210	33662381	.	+	0	Parent=Os01t0794800-01
Chr01	irgsp1_rep	CDS	33662471	33663012	.	+	2	Parent=Os01t0794800-01
Chr01	irgsp1_rep	three_prime_UTR	33663013	33663245	.	+	.	Parent=Os01t0794800-01
Chr01	irgsp1_rep	mRNA	33659786	33661544	.	+	.	ID=Os01t0794800-02;Name=Os01t0794800-02;Locus_id=Os01g0794800;Note=Similar to Subtilase.;Transcript_evidence=AK109067 (DDBJ%2C Best hit);ORF_evidence=Q9FVC7 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Peptidase S8%2C subtilisin-related (IPR015500);NIAS_FLcDNA=002-154-F11;TENOR=Os01t0794800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	33659786	33660441	.	+	.	Parent=Os01t0794800-02
Chr01	irgsp1_rep	CDS	33660442	33660655	.	+	0	Parent=Os01t0794800-02
Chr01	irgsp1_rep	CDS	33660751	33661370	.	+	2	Parent=Os01t0794800-02
Chr01	irgsp1_rep	CDS	33661463	33661540	.	+	0	Parent=Os01t0794800-02
Chr01	irgsp1_rep	three_prime_UTR	33661541	33661544	.	+	.	Parent=Os01t0794800-02
Chr01	irgsp1_rep	mRNA	33660222	33665168	.	-	.	ID=Os01t0794900-01;Name=Os01t0794900-01;Locus_id=Os01g0794900;Note=Hypothetical protein.;Transcript_evidence=AK106644 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-113-E09;TENOR=Os01t0794900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	33664948	33665168	.	-	.	Parent=Os01t0794900-01
Chr01	irgsp1_rep	five_prime_UTR	33664701	33664838	.	-	.	Parent=Os01t0794900-01
Chr01	irgsp1_rep	five_prime_UTR	33664382	33664476	.	-	.	Parent=Os01t0794900-01
Chr01	irgsp1_rep	five_prime_UTR	33662931	33663012	.	-	.	Parent=Os01t0794900-01
Chr01	irgsp1_rep	five_prime_UTR	33662446	33662848	.	-	.	Parent=Os01t0794900-01
Chr01	irgsp1_rep	five_prime_UTR	33661997	33662340	.	-	.	Parent=Os01t0794900-01
Chr01	irgsp1_rep	five_prime_UTR	33661630	33661908	.	-	.	Parent=Os01t0794900-01
Chr01	irgsp1_rep	five_prime_UTR	33661298	33661534	.	-	.	Parent=Os01t0794900-01
Chr01	irgsp1_rep	CDS	33660923	33661297	.	-	0	Parent=Os01t0794900-01
Chr01	irgsp1_rep	three_prime_UTR	33660222	33660922	.	-	.	Parent=Os01t0794900-01
Chr01	irgsp1_rep	mRNA	33668016	33672415	.	+	.	ID=Os01t0795000-01;Name=Os01t0795000-01;Locus_id=Os01g0795000;Oryzabase Gene Symbol Synonym(s)=RSP1%2C OsSub5%2C SUB5%2C OsSub6%2C SUB6;Oryzabase Gene Name Synonym(s)=subtilase%2C subtilisin-like serine protease 1%2C Subtilisin 5%2C SUBTILISIN 5%2C Subtilisin 6%2C SUBTILISIN 6;Note=Subtilase.;Transcript_evidence=AK243517 (DDBJ%2C Best hit);ORF_evidence=Q9FVC7 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);NIAS_FLcDNA=J100075F14;Oryzabase=13859;TENOR=Os01t0795000-01;KEGG=Os01t0795000-01
Chr01	irgsp1_rep	five_prime_UTR	33668016	33668032	.	+	.	Parent=Os01t0795000-01
Chr01	irgsp1_rep	CDS	33668033	33668122	.	+	0	Parent=Os01t0795000-01
Chr01	irgsp1_rep	CDS	33668213	33668304	.	+	0	Parent=Os01t0795000-01
Chr01	irgsp1_rep	CDS	33668471	33668568	.	+	1	Parent=Os01t0795000-01
Chr01	irgsp1_rep	CDS	33668801	33668956	.	+	2	Parent=Os01t0795000-01
Chr01	irgsp1_rep	CDS	33670049	33670668	.	+	2	Parent=Os01t0795000-01
Chr01	irgsp1_rep	CDS	33670762	33670832	.	+	0	Parent=Os01t0795000-01
Chr01	irgsp1_rep	CDS	33670918	33671169	.	+	1	Parent=Os01t0795000-01
Chr01	irgsp1_rep	CDS	33671236	33671353	.	+	1	Parent=Os01t0795000-01
Chr01	irgsp1_rep	CDS	33671457	33671628	.	+	0	Parent=Os01t0795000-01
Chr01	irgsp1_rep	CDS	33671712	33672253	.	+	2	Parent=Os01t0795000-01
Chr01	irgsp1_rep	three_prime_UTR	33672254	33672415	.	+	.	Parent=Os01t0795000-01
Chr01	irgsp1_rep	mRNA	33670853	33674489	.	-	.	ID=Os01t0795050-01;Name=Os01t0795050-01;Locus_id=Os01g0795050;Note=Hypothetical gene.;Transcript_evidence=AK241961 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J075093H18;TENOR=Os01t0795050-01;KEGG=Os01t0795050-01
Chr01	irgsp1_rep	five_prime_UTR	33674157	33674489	.	-	.	Parent=Os01t0795050-01
Chr01	irgsp1_rep	five_prime_UTR	33672172	33672254	.	-	.	Parent=Os01t0795050-01
Chr01	irgsp1_rep	five_prime_UTR	33672023	33672089	.	-	.	Parent=Os01t0795050-01
Chr01	irgsp1_rep	five_prime_UTR	33671705	33671935	.	-	.	Parent=Os01t0795050-01
Chr01	irgsp1_rep	CDS	33671687	33671704	.	-	0	Parent=Os01t0795050-01
Chr01	irgsp1_rep	CDS	33671431	33671598	.	-	0	Parent=Os01t0795050-01
Chr01	irgsp1_rep	CDS	33671271	33671339	.	-	0	Parent=Os01t0795050-01
Chr01	irgsp1_rep	three_prime_UTR	33671241	33671270	.	-	.	Parent=Os01t0795050-01
Chr01	irgsp1_rep	three_prime_UTR	33670853	33671140	.	-	.	Parent=Os01t0795050-01
Chr01	irgsp1_rep	mRNA	33675136	33679717	.	+	.	ID=Os01t0795100-00;Name=Os01t0795100-00;Locus_id=Os01g0795100;Oryzabase Gene Symbol Synonym(s)=OsSub7%2C SUB7;Oryzabase Gene Name Synonym(s)=Subtilisin 7%2C SUBTILISIN 7;Note=Similar to Subtilase.;Transcript_evidence=ab initio prediction;ORF_evidence=Q9FVC7 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);Oryzabase=20097;TENOR=Os01t0795100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	33675136	33675248	.	+	0	Parent=Os01t0795100-00
Chr01	irgsp1_rep	CDS	33675527	33675583	.	+	1	Parent=Os01t0795100-00
Chr01	irgsp1_rep	CDS	33675712	33675809	.	+	1	Parent=Os01t0795100-00
Chr01	irgsp1_rep	CDS	33676224	33676379	.	+	2	Parent=Os01t0795100-00
Chr01	irgsp1_rep	CDS	33676486	33677108	.	+	2	Parent=Os01t0795100-00
Chr01	irgsp1_rep	CDS	33677226	33677302	.	+	0	Parent=Os01t0795100-00
Chr01	irgsp1_rep	CDS	33678293	33678547	.	+	1	Parent=Os01t0795100-00
Chr01	irgsp1_rep	CDS	33678692	33678809	.	+	1	Parent=Os01t0795100-00
Chr01	irgsp1_rep	CDS	33678916	33679087	.	+	0	Parent=Os01t0795100-00
Chr01	irgsp1_rep	CDS	33679176	33679717	.	+	2	Parent=Os01t0795100-00
Chr01	irgsp1_rep	mRNA	33684778	33688225	.	+	.	ID=Os01t0795200-01;Name=Os01t0795200-01;Locus_id=Os01g0795200;Oryzabase Gene Symbol Synonym(s)=OsSub8%2C SUB8;Oryzabase Gene Name Synonym(s)=Subtilisin 8%2C SUBTILISIN 8;Note=Similar to Subtilase.;Transcript_evidence=AK066488 (DDBJ%2C Best hit);ORF_evidence=Q9FVC7 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);NIAS_FLcDNA=J013069K18;Oryzabase=20098;Expression=AK066488;TENOR=Os01t0795200-01;KEGG=Os01t0795200-01
Chr01	irgsp1_rep	five_prime_UTR	33684778	33684785	.	+	.	Parent=Os01t0795200-01
Chr01	irgsp1_rep	CDS	33684786	33684875	.	+	0	Parent=Os01t0795200-01
Chr01	irgsp1_rep	CDS	33684965	33685056	.	+	0	Parent=Os01t0795200-01
Chr01	irgsp1_rep	CDS	33685185	33685282	.	+	1	Parent=Os01t0795200-01
Chr01	irgsp1_rep	CDS	33685566	33685721	.	+	2	Parent=Os01t0795200-01
Chr01	irgsp1_rep	CDS	33685848	33686233	.	+	2	Parent=Os01t0795200-01
Chr01	irgsp1_rep	CDS	33686285	33686473	.	+	0	Parent=Os01t0795200-01
Chr01	irgsp1_rep	CDS	33686568	33686638	.	+	0	Parent=Os01t0795200-01
Chr01	irgsp1_rep	CDS	33686729	33686983	.	+	1	Parent=Os01t0795200-01
Chr01	irgsp1_rep	CDS	33687079	33687196	.	+	1	Parent=Os01t0795200-01
Chr01	irgsp1_rep	CDS	33687337	33687508	.	+	0	Parent=Os01t0795200-01
Chr01	irgsp1_rep	CDS	33687596	33688137	.	+	2	Parent=Os01t0795200-01
Chr01	irgsp1_rep	three_prime_UTR	33688138	33688225	.	+	.	Parent=Os01t0795200-01
Chr01	irgsp1_rep	mRNA	33685183	33688148	.	-	.	ID=Os01t0795250-00;Name=Os01t0795250-00;Locus_id=Os01g0795250;Note=Hypothetical protein.;Transcript_evidence=tplb0021i12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0795250-00
Chr01	irgsp1_rep	five_prime_UTR	33687603	33688148	.	-	.	Parent=Os01t0795250-00
Chr01	irgsp1_rep	five_prime_UTR	33687343	33687516	.	-	.	Parent=Os01t0795250-00
Chr01	irgsp1_rep	five_prime_UTR	33687171	33687203	.	-	.	Parent=Os01t0795250-00
Chr01	irgsp1_rep	CDS	33687118	33687170	.	-	0	Parent=Os01t0795250-00
Chr01	irgsp1_rep	CDS	33686790	33687015	.	-	1	Parent=Os01t0795250-00
Chr01	irgsp1_rep	three_prime_UTR	33686727	33686789	.	-	.	Parent=Os01t0795250-00
Chr01	irgsp1_rep	three_prime_UTR	33685837	33686576	.	-	.	Parent=Os01t0795250-00
Chr01	irgsp1_rep	three_prime_UTR	33685591	33685718	.	-	.	Parent=Os01t0795250-00
Chr01	irgsp1_rep	three_prime_UTR	33685183	33685303	.	-	.	Parent=Os01t0795250-00
Chr01	irgsp1_rep	mRNA	33692513	33696520	.	-	.	ID=Os01t0795300-01;Name=Os01t0795300-01;Locus_id=Os01g0795300;Note=Hypothetical protein.;Transcript_evidence=AK070252 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023044E11;Expression=AK070252;TENOR=Os01t0795300-01;KEGG=Os01t0795300-01
Chr01	irgsp1_rep	five_prime_UTR	33696381	33696520	.	-	.	Parent=Os01t0795300-01
Chr01	irgsp1_rep	five_prime_UTR	33693994	33694264	.	-	.	Parent=Os01t0795300-01
Chr01	irgsp1_rep	CDS	33693845	33693993	.	-	0	Parent=Os01t0795300-01
Chr01	irgsp1_rep	CDS	33693714	33693771	.	-	1	Parent=Os01t0795300-01
Chr01	irgsp1_rep	CDS	33693419	33693516	.	-	0	Parent=Os01t0795300-01
Chr01	irgsp1_rep	CDS	33692726	33692768	.	-	1	Parent=Os01t0795300-01
Chr01	irgsp1_rep	three_prime_UTR	33692513	33692725	.	-	.	Parent=Os01t0795300-01
Chr01	irgsp1_rep	mRNA	33690753	33696517	.	-	.	ID=Os01t0795300-02;Name=Os01t0795300-02;Locus_id=Os01g0795300;Note=Non-protein coding transcript.;Transcript_evidence=AK101716 (DDBJ%2C Best hit),AK101715 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J033060N24,J033060N21;TENOR=Os01t0795300-02
Chr01	irgsp1_rep	exon	33696381	33696517	.	-	.	Parent=Os01t0795300-02
Chr01	irgsp1_rep	exon	33693714	33694264	.	-	.	Parent=Os01t0795300-02
Chr01	irgsp1_rep	exon	33693419	33693516	.	-	.	Parent=Os01t0795300-02
Chr01	irgsp1_rep	exon	33690753	33692768	.	-	.	Parent=Os01t0795300-02
Chr01	irgsp1_rep	mRNA	33693517	33696504	.	-	.	ID=Os01t0795300-03;Name=Os01t0795300-03;Locus_id=Os01g0795300;Note=Non-protein coding transcript.;Transcript_evidence=AK111262 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-180-F03;TENOR=Os01t0795300-03
Chr01	irgsp1_rep	exon	33696381	33696504	.	-	.	Parent=Os01t0795300-03
Chr01	irgsp1_rep	exon	33693517	33694264	.	-	.	Parent=Os01t0795300-03
Chr01	irgsp1_rep	mRNA	33691811	33696348	.	+	.	ID=Os01t0795400-01;Name=Os01t0795400-01;Locus_id=Os01g0795400;Oryzabase Gene Symbol Synonym(s)=Hwi2%2C OsSub9%2C SUB9;Oryzabase Gene Name Synonym(s)=Subtilisin 9%2C SUBTILISIN 9;Note=Similar to Subtilase.;Transcript_evidence=AK100351 (DDBJ%2C Best hit);ORF_evidence=Q9FVC7 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500);NIAS_FLcDNA=J023083C17;Oryzabase=19628;TENOR=Os01t0795400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	33691811	33691885	.	+	0	Parent=Os01t0795400-01
Chr01	irgsp1_rep	CDS	33691973	33692064	.	+	0	Parent=Os01t0795400-01
Chr01	irgsp1_rep	CDS	33692232	33692329	.	+	1	Parent=Os01t0795400-01
Chr01	irgsp1_rep	CDS	33693413	33693568	.	+	2	Parent=Os01t0795400-01
Chr01	irgsp1_rep	CDS	33693669	33694375	.	+	2	Parent=Os01t0795400-01
Chr01	irgsp1_rep	three_prime_UTR	33694376	33695285	.	+	.	Parent=Os01t0795400-01
Chr01	irgsp1_rep	three_prime_UTR	33695413	33695584	.	+	.	Parent=Os01t0795400-01
Chr01	irgsp1_rep	three_prime_UTR	33695670	33696348	.	+	.	Parent=Os01t0795400-01
Chr01	irgsp1_rep	mRNA	33699128	33699682	.	+	.	ID=Os01t0795600-01;Name=Os01t0795600-01;Locus_id=Os01g0795600;Note=Conserved hypothetical protein.;Transcript_evidence=AK111059 (DDBJ%2C Best hit);ORF_evidence=A2WVY5 (UniProt);NIAS_FLcDNA=002-175-D05;Expression=AK111059;TENOR=Os01t0795600-01;KEGG=Os01t0795600-01
Chr01	irgsp1_rep	five_prime_UTR	33699128	33699221	.	+	.	Parent=Os01t0795600-01
Chr01	irgsp1_rep	CDS	33699222	33699467	.	+	0	Parent=Os01t0795600-01
Chr01	irgsp1_rep	three_prime_UTR	33699468	33699682	.	+	.	Parent=Os01t0795600-01
Chr01	irgsp1_rep	mRNA	33703428	33703969	.	+	.	ID=Os01t0795700-01;Name=Os01t0795700-01;Locus_id=Os01g0795700;Note=Non-protein coding transcript.;Transcript_evidence=AK067879 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013123M04;TENOR=Os01t0795700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	exon	33703428	33703969	.	+	.	Parent=Os01t0795700-01
Chr01	irgsp1_rep	mRNA	33707426	33708111	.	+	.	ID=Os01t0795766-00;Name=Os01t0795766-00;Locus_id=Os01g0795766;Note=Non-protein coding transcript.;Transcript_evidence=CT835006 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os01t0795766-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	exon	33707426	33708111	.	+	.	Parent=Os01t0795766-00
Chr01	irgsp1_rep	mRNA	33708780	33709258	.	+	.	ID=Os01t0795832-00;Name=Os01t0795832-00;Locus_id=Os01g0795832;Note=Conserved hypothetical protein.;Transcript_evidence=CT837699 (DDBJ%2C Best hit);ORF_evidence=NP_001044512.2 (RefSeq);TENOR=Os01t0795832-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	33708780	33708795	.	+	.	Parent=Os01t0795832-00
Chr01	irgsp1_rep	CDS	33708796	33709035	.	+	0	Parent=Os01t0795832-00
Chr01	irgsp1_rep	three_prime_UTR	33709036	33709258	.	+	.	Parent=Os01t0795832-00
Chr01	irgsp1_rep	mRNA	33710184	33710502	.	+	.	ID=Os01t0795900-00;Name=Os01t0795900-00;Locus_id=Os01g0795900;Note=Hypothetical protein.;Transcript_evidence=AK364403 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0795900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	33710184	33710186	.	+	.	Parent=Os01t0795900-00
Chr01	irgsp1_rep	CDS	33710187	33710411	.	+	0	Parent=Os01t0795900-00
Chr01	irgsp1_rep	three_prime_UTR	33710412	33710502	.	+	.	Parent=Os01t0795900-00
Chr01	irgsp1_rep	mRNA	33713552	33714121	.	+	.	ID=Os01t0796000-01;Name=Os01t0796000-01;Locus_id=Os01g0796000;Note=Conserved hypothetical protein.;Transcript_evidence=AK242415 (DDBJ%2C Best hit);ORF_evidence=B8AAU5 (UniProt);NIAS_FLcDNA=J080079L02;TENOR=Os01t0796000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	33713552	33713646	.	+	.	Parent=Os01t0796000-01
Chr01	irgsp1_rep	CDS	33713647	33713898	.	+	0	Parent=Os01t0796000-01
Chr01	irgsp1_rep	three_prime_UTR	33713899	33714121	.	+	.	Parent=Os01t0796000-01
Chr01	irgsp1_rep	mRNA	33730378	33733010	.	+	.	ID=Os01t0796400-01;Name=Os01t0796400-01;Locus_id=Os01g0796400;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK103329 (DDBJ%2C Best hit);ORF_evidence=B6U310 (UniProt);GO=Biological Process: fatty acid metabolic process (GO:0006631),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: 3-hydroxyacyl-CoA dehydrogenase activity (GO:0003857),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: coenzyme binding (GO:0050662);InterPro=3-hydroxyacyl-CoA dehydrogenase%2C C-terminal (IPR006108),3-hydroxyacyl-CoA dehydrogenase%2C NAD binding (IPR006176),3-hydroxyacyl-CoA dehydrogenase%2C conserved site (IPR006180),6-phosphogluconate dehydrogenase%2C C-terminal-like (IPR008927),Dehydrogenase%2C multihelical (IPR013328),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033125N02;Expression=AK103329;TENOR=Os01t0796400-01;KEGG=Os01t0796400-01 (EC:1.1.1.157)
Chr01	irgsp1_rep	five_prime_UTR	33730378	33730484	.	+	.	Parent=Os01t0796400-01
Chr01	irgsp1_rep	CDS	33730485	33730688	.	+	0	Parent=Os01t0796400-01
Chr01	irgsp1_rep	CDS	33730777	33730998	.	+	0	Parent=Os01t0796400-01
Chr01	irgsp1_rep	CDS	33731531	33731643	.	+	0	Parent=Os01t0796400-01
Chr01	irgsp1_rep	CDS	33732323	33732692	.	+	1	Parent=Os01t0796400-01
Chr01	irgsp1_rep	three_prime_UTR	33732693	33733010	.	+	.	Parent=Os01t0796400-01
Chr01	irgsp1_rep	mRNA	33730480	33733010	.	+	.	ID=Os01t0796400-02;Name=Os01t0796400-02;Locus_id=Os01g0796400;Note=Similar to 3-hydroxybutyryl-CoA dehydrogenase.;Transcript_evidence=AK060287 (DDBJ%2C Best hit);ORF_evidence=B6U310 (UniProt);GO=Biological Process: fatty acid metabolic process (GO:0006631),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: 3-hydroxyacyl-CoA dehydrogenase activity (GO:0003857),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=3-hydroxyacyl-CoA dehydrogenase%2C NAD binding (IPR006176),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-006-C09;Expression=AK060287;TENOR=Os01t0796400-02;KEGG=Os01t0796400-02 (EC:1.1.1.35%2C EC:4.2.1.17%2C EC:5.3.3.8)
Chr01	irgsp1_rep	five_prime_UTR	33730480	33730484	.	+	.	Parent=Os01t0796400-02
Chr01	irgsp1_rep	CDS	33730485	33730688	.	+	0	Parent=Os01t0796400-02
Chr01	irgsp1_rep	CDS	33730777	33731148	.	+	0	Parent=Os01t0796400-02
Chr01	irgsp1_rep	three_prime_UTR	33731149	33731643	.	+	.	Parent=Os01t0796400-02
Chr01	irgsp1_rep	three_prime_UTR	33732323	33733010	.	+	.	Parent=Os01t0796400-02
Chr01	irgsp1_rep	mRNA	33733124	33735548	.	-	.	ID=Os01t0796500-01;Name=Os01t0796500-01;Locus_id=Os01g0796500;Note=Similar to predicted protein.;Transcript_evidence=AK288097 (DDBJ%2C Best hit);ORF_evidence=XP_002878242.1 (RefSeq);InterPro=HAD-superfamily phosphatase%2C subfamily IIIA (IPR010021),HAD-like domain (IPR023214);NIAS_FLcDNA=J075192N07;TENOR=Os01t0796500-01;KEGG=Os01t0796500-01
Chr01	irgsp1_rep	five_prime_UTR	33735462	33735548	.	-	.	Parent=Os01t0796500-01
Chr01	irgsp1_rep	CDS	33735155	33735461	.	-	0	Parent=Os01t0796500-01
Chr01	irgsp1_rep	CDS	33734975	33735055	.	-	2	Parent=Os01t0796500-01
Chr01	irgsp1_rep	CDS	33734422	33734495	.	-	2	Parent=Os01t0796500-01
Chr01	irgsp1_rep	CDS	33734233	33734340	.	-	0	Parent=Os01t0796500-01
Chr01	irgsp1_rep	CDS	33733494	33733631	.	-	0	Parent=Os01t0796500-01
Chr01	irgsp1_rep	three_prime_UTR	33733124	33733493	.	-	.	Parent=Os01t0796500-01
Chr01	irgsp1_rep	mRNA	33740652	33745858	.	-	.	ID=Os01t0796700-01;Name=Os01t0796700-01;Locus_id=Os01g0796700;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK120491 (DDBJ%2C Best hit);ORF_evidence=B6U5U6 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J013119G16;Expression=AK120491;TENOR=Os01t0796700-01;KEGG=Os01t0796700-01 (EC:6.3.2.19)
Chr01	irgsp1_rep	five_prime_UTR	33745656	33745858	.	-	.	Parent=Os01t0796700-01
Chr01	irgsp1_rep	CDS	33745436	33745655	.	-	0	Parent=Os01t0796700-01
Chr01	irgsp1_rep	CDS	33745234	33745306	.	-	2	Parent=Os01t0796700-01
Chr01	irgsp1_rep	CDS	33743911	33743969	.	-	1	Parent=Os01t0796700-01
Chr01	irgsp1_rep	CDS	33742942	33743023	.	-	2	Parent=Os01t0796700-01
Chr01	irgsp1_rep	CDS	33742687	33742807	.	-	1	Parent=Os01t0796700-01
Chr01	irgsp1_rep	CDS	33742565	33742606	.	-	0	Parent=Os01t0796700-01
Chr01	irgsp1_rep	CDS	33741890	33742420	.	-	0	Parent=Os01t0796700-01
Chr01	irgsp1_rep	CDS	33741398	33741505	.	-	0	Parent=Os01t0796700-01
Chr01	irgsp1_rep	CDS	33741106	33741306	.	-	0	Parent=Os01t0796700-01
Chr01	irgsp1_rep	CDS	33740976	33741008	.	-	0	Parent=Os01t0796700-01
Chr01	irgsp1_rep	three_prime_UTR	33740652	33740975	.	-	.	Parent=Os01t0796700-01
Chr01	irgsp1_rep	mRNA	33766984	33768044	.	+	.	ID=Os01t0797600-01;Name=Os01t0797600-01;Locus_id=Os01g0797600;RAP-DB Gene Symbol Synonym(s)=ERF3%2C AP37%2C OsAP37%2C OsERF3%2C OsERF#075%2C OsERF075%2C OsERF75%2C ERF75%2C AP2/EREBP#004%2C AP2/EREBP4%2C OsBIERF2%2C BIERF2;RAP-DB Gene Name Synonym(s)=ETHYLENE-RESPONSIVE ELEMENT-BINDING FACTOR 3%2C Apetela2 transcription factor 37%2C ethylene response factor 3%2C Ethylene responsive factor 3%2C ethylene response factor 75%2C APETALA2/ethylene-responsive element binding protein 4%2C benzothiadiazole (BTH)-induced ethylene responsive transcriptional factor 2%2C benzothiadiazole-induced ethylene responsive transcriptional factor 2%2C BTH-induced ethylene responsive transcriptional factor 2%2C ethylene-responsive element binding factor 3;CGSNL Gene Symbol=ERF3;CGSNL Gene Name=ETHYLENE-RESPONSIVE ELEMENT-BINDING FACTOR 3;Oryzabase Gene Symbol Synonym(s)=AP37%2C OsAP37%2C OsERF3%2C OsERF#075%2C OsERF075%2C OsERF75%2C ERF75%2C AP2/EREBP#004%2C AP2/EREBP4%2C OsBIERF2%2C BIERF2%2C DLN23%2C OsDLN23;Oryzabase Gene Name Synonym(s)=Apetela2 transcription factor 37%2C ethylene response factor 3%2C Ethylene responsive factor 3%2C ethylene response factor 75%2C APETALA2/ethylene-responsive element binding protein 4%2C benzothiadiazole (BTH)-induced ethylene responsive transcriptional factor 2%2C benzothiadiazole-induced ethylene responsive transcriptional factor 2%2C BTH-induced ethylene responsive transcriptional factor 2%2C ethylene-responsive element binding factor 3%2C APETALA37%2C DLN repressor 23%2C DLN motif protein 23;Note=AP2/ERF family protein%2C ERF-associated EAR-motif-containing repressor%2C Abiotic stress response%2C Stress signaling;Transcript_evidence=AK061380 (Genbank),AB036883 (Genbank);ORF_evidence=Q7F4G5 (UniProt),Q9LRF3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J023010G17,006-304-H01;Manual Curation=July 23%2C 2009;Literature_PMID=11487705,19429605,16473545;Oryzabase=8651;Expression=AK069262,AK061380,AB036883;TENOR=Os01t0797600-01;KEGG=Os01t0797600-01
Chr01	irgsp1_rep	five_prime_UTR	33766984	33767073	.	+	.	Parent=Os01t0797600-01
Chr01	irgsp1_rep	CDS	33767074	33767781	.	+	0	Parent=Os01t0797600-01
Chr01	irgsp1_rep	three_prime_UTR	33767782	33768044	.	+	.	Parent=Os01t0797600-01
Chr01	irgsp1_rep	mRNA	33771122	33773726	.	+	.	ID=Os01t0797700-01;Name=Os01t0797700-01;Locus_id=Os01g0797700;Note=Non-protein coding transcript.;Transcript_evidence=AK110649 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-169-D11;TENOR=Os01t0797700-01
Chr01	irgsp1_rep	exon	33771122	33771301	.	+	.	Parent=Os01t0797700-01
Chr01	irgsp1_rep	exon	33773369	33773726	.	+	.	Parent=Os01t0797700-01
Chr01	irgsp1_rep	mRNA	33778293	33779622	.	+	.	ID=Os01t0797800-01;Name=Os01t0797800-01;Locus_id=Os01g0797800;Note=Similar to Protein kinase Kelch repeat:Kelch.;Transcript_evidence=AK122155 (DDBJ%2C Best hit);ORF_evidence=B6SJR4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Kelch-type beta propeller (IPR015915);NIAS_FLcDNA=J033145E22;Expression=AK122155;TENOR=Os01t0797800-01;KEGG=Os01t0797800-01
Chr01	irgsp1_rep	five_prime_UTR	33778293	33778403	.	+	.	Parent=Os01t0797800-01
Chr01	irgsp1_rep	five_prime_UTR	33778490	33778764	.	+	.	Parent=Os01t0797800-01
Chr01	irgsp1_rep	CDS	33778765	33779130	.	+	0	Parent=Os01t0797800-01
Chr01	irgsp1_rep	three_prime_UTR	33779131	33779622	.	+	.	Parent=Os01t0797800-01
Chr01	irgsp1_rep	mRNA	33782514	33786281	.	+	.	ID=Os01t0797900-01;Name=Os01t0797900-01;Locus_id=Os01g0797900;Note=Hypothetical protein.;Transcript_evidence=AK070899 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023071N13;TENOR=Os01t0797900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	33782514	33782514	.	+	.	Parent=Os01t0797900-01
Chr01	irgsp1_rep	CDS	33782515	33782910	.	+	0	Parent=Os01t0797900-01
Chr01	irgsp1_rep	three_prime_UTR	33782911	33783093	.	+	.	Parent=Os01t0797900-01
Chr01	irgsp1_rep	three_prime_UTR	33783230	33783287	.	+	.	Parent=Os01t0797900-01
Chr01	irgsp1_rep	three_prime_UTR	33784097	33784279	.	+	.	Parent=Os01t0797900-01
Chr01	irgsp1_rep	three_prime_UTR	33784488	33784549	.	+	.	Parent=Os01t0797900-01
Chr01	irgsp1_rep	three_prime_UTR	33784699	33784759	.	+	.	Parent=Os01t0797900-01
Chr01	irgsp1_rep	three_prime_UTR	33784885	33786281	.	+	.	Parent=Os01t0797900-01
Chr01	irgsp1_rep	mRNA	33782549	33787644	.	+	.	ID=Os01t0797900-02;Name=Os01t0797900-02;Locus_id=Os01g0797900;Note=Hypothetical protein.;Transcript_evidence=AK072949 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023147J15;TENOR=Os01t0797900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	33782549	33782550	.	+	.	Parent=Os01t0797900-02
Chr01	irgsp1_rep	CDS	33782551	33782910	.	+	0	Parent=Os01t0797900-02
Chr01	irgsp1_rep	three_prime_UTR	33782911	33783108	.	+	.	Parent=Os01t0797900-02
Chr01	irgsp1_rep	three_prime_UTR	33783230	33783287	.	+	.	Parent=Os01t0797900-02
Chr01	irgsp1_rep	three_prime_UTR	33784097	33784279	.	+	.	Parent=Os01t0797900-02
Chr01	irgsp1_rep	three_prime_UTR	33784488	33784549	.	+	.	Parent=Os01t0797900-02
Chr01	irgsp1_rep	three_prime_UTR	33784694	33784759	.	+	.	Parent=Os01t0797900-02
Chr01	irgsp1_rep	three_prime_UTR	33784885	33787644	.	+	.	Parent=Os01t0797900-02
Chr01	irgsp1_rep	mRNA	33790593	33794100	.	+	.	ID=Os01t0798100-01;Name=Os01t0798100-01;Locus_id=Os01g0798100;Note=Similar to cDNA clone:J023120H23%2C full insert sequence.;Transcript_evidence=AK061108 (DDBJ%2C Best hit);ORF_evidence=B7F737 (UniProt);NIAS_FLcDNA=006-207-C06;TENOR=Os01t0798100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	33790593	33790925	.	+	.	Parent=Os01t0798100-01
Chr01	irgsp1_rep	five_prime_UTR	33791016	33791202	.	+	.	Parent=Os01t0798100-01
Chr01	irgsp1_rep	five_prime_UTR	33791356	33791568	.	+	.	Parent=Os01t0798100-01
Chr01	irgsp1_rep	five_prime_UTR	33792326	33792390	.	+	.	Parent=Os01t0798100-01
Chr01	irgsp1_rep	CDS	33792391	33792417	.	+	0	Parent=Os01t0798100-01
Chr01	irgsp1_rep	CDS	33793342	33793755	.	+	0	Parent=Os01t0798100-01
Chr01	irgsp1_rep	three_prime_UTR	33793756	33794100	.	+	.	Parent=Os01t0798100-01
Chr01	irgsp1_rep	mRNA	33790595	33794090	.	+	.	ID=Os01t0798100-02;Name=Os01t0798100-02;Locus_id=Os01g0798100;Note=Conserved hypothetical protein.;Transcript_evidence=AK121340 (DDBJ%2C Best hit),AK067900 (DDBJ%2C Best hit),AK121871 (DDBJ%2C Best hit);ORF_evidence=B9FTI0 (UniProt);NIAS_FLcDNA=J023120H23,J013124E05,J033104B21;TENOR=Os01t0798100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	33790595	33790596	.	+	.	Parent=Os01t0798100-02
Chr01	irgsp1_rep	CDS	33790597	33790925	.	+	0	Parent=Os01t0798100-02
Chr01	irgsp1_rep	CDS	33791016	33791166	.	+	1	Parent=Os01t0798100-02
Chr01	irgsp1_rep	three_prime_UTR	33791167	33794090	.	+	.	Parent=Os01t0798100-02
Chr01	irgsp1_rep	mRNA	33793237	33793857	.	-	.	ID=Os01t0798200-01;Name=Os01t0798200-01;Locus_id=Os01g0798200;Note=Conserved hypothetical protein.;Transcript_evidence=AK109272 (DDBJ%2C Best hit);ORF_evidence=B8AAV2 (UniProt);NIAS_FLcDNA=002-188-A08;Expression=AK109272;TENOR=Os01t0798200-01;KEGG=Os01t0798200-01
Chr01	irgsp1_rep	CDS	33793432	33793857	.	-	0	Parent=Os01t0798200-01
Chr01	irgsp1_rep	three_prime_UTR	33793237	33793431	.	-	.	Parent=Os01t0798200-01
Chr01	irgsp1_rep	mRNA	33803155	33805370	.	+	.	ID=Os01t0798500-01;Name=Os01t0798500-01;Locus_id=Os01g0798500;Oryzabase Gene Symbol Synonym(s)=CEST;Note=Similar to predicted protein.;Transcript_evidence=AK061244 (DDBJ%2C Best hit);ORF_evidence=E5KCJ9 (UniProt);NIAS_FLcDNA=006-211-D07;Oryzabase=23073;Expression=AK061244;TENOR=Os01t0798500-01;KEGG=Os01t0798500-01
Chr01	irgsp1_rep	five_prime_UTR	33803155	33803191	.	+	.	Parent=Os01t0798500-01
Chr01	irgsp1_rep	CDS	33803192	33803543	.	+	0	Parent=Os01t0798500-01
Chr01	irgsp1_rep	CDS	33803809	33803924	.	+	2	Parent=Os01t0798500-01
Chr01	irgsp1_rep	CDS	33804421	33804501	.	+	0	Parent=Os01t0798500-01
Chr01	irgsp1_rep	CDS	33804780	33804953	.	+	0	Parent=Os01t0798500-01
Chr01	irgsp1_rep	CDS	33805095	33805184	.	+	0	Parent=Os01t0798500-01
Chr01	irgsp1_rep	three_prime_UTR	33805185	33805370	.	+	.	Parent=Os01t0798500-01
Chr01	irgsp1_rep	mRNA	33803162	33805386	.	+	.	ID=Os01t0798500-02;Name=Os01t0798500-02;Locus_id=Os01g0798500;Oryzabase Gene Symbol Synonym(s)=CEST;Note=Malate synthase-like family protein.;Transcript_evidence=AK068219 (DDBJ%2C Best hit);ORF_evidence=E5KCJ9 (UniProt);NIAS_FLcDNA=J013138A22;Oryzabase=23073;Expression=AK068219;TENOR=Os01t0798500-02;KEGG=Os01t0798500-02
Chr01	irgsp1_rep	five_prime_UTR	33803162	33803191	.	+	.	Parent=Os01t0798500-02
Chr01	irgsp1_rep	CDS	33803192	33803566	.	+	0	Parent=Os01t0798500-02
Chr01	irgsp1_rep	CDS	33803668	33803712	.	+	0	Parent=Os01t0798500-02
Chr01	irgsp1_rep	CDS	33803811	33803924	.	+	0	Parent=Os01t0798500-02
Chr01	irgsp1_rep	CDS	33804421	33804501	.	+	0	Parent=Os01t0798500-02
Chr01	irgsp1_rep	CDS	33804780	33804953	.	+	0	Parent=Os01t0798500-02
Chr01	irgsp1_rep	CDS	33805095	33805184	.	+	0	Parent=Os01t0798500-02
Chr01	irgsp1_rep	three_prime_UTR	33805185	33805386	.	+	.	Parent=Os01t0798500-02
Chr01	irgsp1_rep	mRNA	33812915	33815127	.	-	.	ID=Os01t0798800-01;Name=Os01t0798800-01;Locus_id=Os01g0798800;Note=Protein of unknown function DUF594 family protein.;Transcript_evidence=AK064257 (DDBJ%2C Best hit);ORF_evidence=B8AAV5 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);NIAS_FLcDNA=002-105-C11;Expression=AK064257;TENOR=Os01t0798800-01;KEGG=Os01t0798800-01
Chr01	irgsp1_rep	five_prime_UTR	33815086	33815127	.	-	.	Parent=Os01t0798800-01
Chr01	irgsp1_rep	CDS	33814705	33815085	.	-	0	Parent=Os01t0798800-01
Chr01	irgsp1_rep	CDS	33812932	33814617	.	-	0	Parent=Os01t0798800-01
Chr01	irgsp1_rep	three_prime_UTR	33812915	33812931	.	-	.	Parent=Os01t0798800-01
Chr01	irgsp1_rep	mRNA	33815405	33816598	.	+	.	ID=Os01t0798900-00;Name=Os01t0798900-00;Locus_id=Os01g0798900;Note=Similar to disease resistance protein RGA4.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001147651.1 (RefSeq);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os01t0798900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	33815405	33816598	.	+	0	Parent=Os01t0798900-00
Chr01	irgsp1_rep	mRNA	33816659	33820971	.	-	.	ID=Os01t0799000-00;Name=Os01t0799000-00;Locus_id=Os01g0799000;Note=Leucine-rich repeat-containing protein domain containing protein.;Transcript_evidence=CT834916 (DDBJ%2C Best hit);ORF_evidence=NP_001044526.1 (RefSeq);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os01t0799000-00;KEGG=Os01t0799000-00
Chr01	irgsp1_rep	five_prime_UTR	33820556	33820971	.	-	.	Parent=Os01t0799000-00
Chr01	irgsp1_rep	five_prime_UTR	33820079	33820175	.	-	.	Parent=Os01t0799000-00
Chr01	irgsp1_rep	five_prime_UTR	33819693	33819857	.	-	.	Parent=Os01t0799000-00
Chr01	irgsp1_rep	five_prime_UTR	33818738	33818761	.	-	.	Parent=Os01t0799000-00
Chr01	irgsp1_rep	CDS	33816854	33818737	.	-	0	Parent=Os01t0799000-00
Chr01	irgsp1_rep	three_prime_UTR	33816659	33816853	.	-	.	Parent=Os01t0799000-00
Chr01	irgsp1_rep	mRNA	33816849	33818767	.	+	.	ID=Os01t0799050-00;Name=Os01t0799050-00;Locus_id=Os01g0799050;Note=Hypothetical protein.;Transcript_evidence=tplb0055a01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0799050-00
Chr01	irgsp1_rep	five_prime_UTR	33816849	33817586	.	+	.	Parent=Os01t0799050-00
Chr01	irgsp1_rep	CDS	33817587	33817913	.	+	0	Parent=Os01t0799050-00
Chr01	irgsp1_rep	three_prime_UTR	33817914	33818767	.	+	.	Parent=Os01t0799050-00
Chr01	irgsp1_rep	mRNA	33821312	33828770	.	+	.	ID=Os01t0799100-01;Name=Os01t0799100-01;Locus_id=Os01g0799100;Note=NB-ARC domain containing protein.;Transcript_evidence=AK241721 (DDBJ%2C Best hit);ORF_evidence=NP_001044527.2 (RefSeq);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J065198I08;TENOR=Os01t0799100-01;KEGG=Os01t0799100-01
Chr01	irgsp1_rep	five_prime_UTR	33821312	33821409	.	+	.	Parent=Os01t0799100-01
Chr01	irgsp1_rep	five_prime_UTR	33825578	33825608	.	+	.	Parent=Os01t0799100-01
Chr01	irgsp1_rep	CDS	33825609	33828569	.	+	0	Parent=Os01t0799100-01
Chr01	irgsp1_rep	three_prime_UTR	33828570	33828770	.	+	.	Parent=Os01t0799100-01
Chr01	irgsp1_rep	mRNA	33837388	33840402	.	+	.	ID=Os01t0799500-01;Name=Os01t0799500-01;Locus_id=Os01g0799500;Oryzabase Gene Symbol Synonym(s)=TagI;Note=Methyladenine glycosylase domain containing protein.;Transcript_evidence=AK109346 (DDBJ%2C Best hit);ORF_evidence=B4FWT0 (UniProt);GO=Biological Process: DNA repair (GO:0006281),Biological Process: base-excision repair (GO:0006284),Molecular Function: catalytic activity (GO:0003824),Molecular Function: DNA-3-methyladenine glycosylase I activity (GO:0008725);InterPro=Methyladenine glycosylase (IPR005019),DNA glycosylase (IPR011257);NIAS_FLcDNA=006-203-E05;Oryzabase=21277;Expression=AK109346;TENOR=Os01t0799500-01;KEGG=Os01t0799500-01 (EC:3.2.2.20)
Chr01	irgsp1_rep	five_prime_UTR	33837388	33837492	.	+	.	Parent=Os01t0799500-01
Chr01	irgsp1_rep	CDS	33837493	33838129	.	+	0	Parent=Os01t0799500-01
Chr01	irgsp1_rep	CDS	33838212	33838269	.	+	2	Parent=Os01t0799500-01
Chr01	irgsp1_rep	CDS	33838362	33838445	.	+	1	Parent=Os01t0799500-01
Chr01	irgsp1_rep	CDS	33838561	33838696	.	+	1	Parent=Os01t0799500-01
Chr01	irgsp1_rep	CDS	33839933	33840193	.	+	0	Parent=Os01t0799500-01
Chr01	irgsp1_rep	three_prime_UTR	33840194	33840402	.	+	.	Parent=Os01t0799500-01
Chr01	irgsp1_rep	mRNA	33840364	33840967	.	+	.	ID=Os01t0799500-02;Name=Os01t0799500-02;Locus_id=Os01g0799500;Oryzabase Gene Symbol Synonym(s)=TagI;Note=Hypothetical gene.;Transcript_evidence=AK111361 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-181-H06;Oryzabase=21277;Expression=AK111361;TENOR=Os01t0799500-02;KEGG=Os01t0799500-02
Chr01	irgsp1_rep	five_prime_UTR	33840364	33840697	.	+	.	Parent=Os01t0799500-02
Chr01	irgsp1_rep	CDS	33840698	33840967	.	+	0	Parent=Os01t0799500-02
Chr01	irgsp1_rep	mRNA	33841675	33843236	.	-	.	ID=Os01t0799600-01;Name=Os01t0799600-01;Locus_id=Os01g0799600;Note=Non-protein coding transcript.;Transcript_evidence=AK242702 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090039F03;TENOR=Os01t0799600-01
Chr01	irgsp1_rep	exon	33841675	33843236	.	-	.	Parent=Os01t0799600-01
Chr01	irgsp1_rep	mRNA	33869142	33871835	.	+	.	ID=Os01t0799900-01;Name=Os01t0799900-01;Locus_id=Os01g0799900;CGSNL Gene Symbol=MC6;CGSNL Gene Name=METACASPASE 6;Oryzabase Gene Symbol Synonym(s)=OsMC6;Oryzabase Gene Name Synonym(s)=Metacaspase 6;Note=Similar to Latex-abundant protein.;Transcript_evidence=AK072822 (DDBJ%2C Best hit);ORF_evidence=D1MBU0 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197);InterPro=Peptidase C14%2C caspase catalytic (IPR011600);NIAS_FLcDNA=J023138I07;Oryzabase=18158;Expression=AK072822;TENOR=Os01t0799900-01;KEGG=Os01t0799900-01
Chr01	irgsp1_rep	five_prime_UTR	33869142	33869306	.	+	.	Parent=Os01t0799900-01
Chr01	irgsp1_rep	CDS	33869307	33869655	.	+	0	Parent=Os01t0799900-01
Chr01	irgsp1_rep	CDS	33870705	33871609	.	+	2	Parent=Os01t0799900-01
Chr01	irgsp1_rep	three_prime_UTR	33871610	33871835	.	+	.	Parent=Os01t0799900-01
Chr01	irgsp1_rep	mRNA	33876599	33877057	.	-	.	ID=Os01t0800000-01;Name=Os01t0800000-01;Locus_id=Os01g0800000;Note=Conserved hypothetical protein.;Transcript_evidence=AK242998 (DDBJ%2C Best hit);ORF_evidence=B8AAV7 (UniProt);NIAS_FLcDNA=J090095K01;TENOR=Os01t0800000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	33877057	33877057	.	-	.	Parent=Os01t0800000-01
Chr01	irgsp1_rep	CDS	33876805	33877056	.	-	0	Parent=Os01t0800000-01
Chr01	irgsp1_rep	three_prime_UTR	33876599	33876804	.	-	.	Parent=Os01t0800000-01
Chr01	irgsp1_rep	mRNA	33878444	33878904	.	-	.	ID=Os01t0800101-01;Name=Os01t0800101-01;Locus_id=Os01g0800101;Note=Hypothetical conserved gene.;Transcript_evidence=AK242738 (DDBJ%2C Best hit);ORF_evidence=B9ETR4 (UniProt);NIAS_FLcDNA=J090049F04;TENOR=Os01t0800101-01;KEGG=Os01t0800101-01
Chr01	irgsp1_rep	five_prime_UTR	33878837	33878904	.	-	.	Parent=Os01t0800101-01
Chr01	irgsp1_rep	CDS	33878627	33878836	.	-	0	Parent=Os01t0800101-01
Chr01	irgsp1_rep	three_prime_UTR	33878444	33878626	.	-	.	Parent=Os01t0800101-01
Chr01	irgsp1_rep	mRNA	33882009	33882308	.	+	.	ID=Os01t0800200-00;Name=Os01t0800200-00;Locus_id=Os01g0800200;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001172605.1 (RefSeq);TENOR=Os01t0800200-00;KEGG=Os01t0800200-00 (EC:2.7.2.3)
Chr01	irgsp1_rep	CDS	33882009	33882308	.	+	0	Parent=Os01t0800200-00
Chr01	irgsp1_rep	mRNA	33884974	33887391	.	-	.	ID=Os01t0800250-00;Name=Os01t0800250-00;Locus_id=Os01g0800250;Note=Hypothetical gene.;Transcript_evidence=BT088042 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0800250-00
Chr01	irgsp1_rep	five_prime_UTR	33887217	33887391	.	-	.	Parent=Os01t0800250-00
Chr01	irgsp1_rep	five_prime_UTR	33886989	33887144	.	-	.	Parent=Os01t0800250-00
Chr01	irgsp1_rep	five_prime_UTR	33886521	33886846	.	-	.	Parent=Os01t0800250-00
Chr01	irgsp1_rep	five_prime_UTR	33886058	33886353	.	-	.	Parent=Os01t0800250-00
Chr01	irgsp1_rep	CDS	33886054	33886057	.	-	0	Parent=Os01t0800250-00
Chr01	irgsp1_rep	CDS	33884974	33885352	.	-	2	Parent=Os01t0800250-00
Chr01	irgsp1_rep	mRNA	33884788	33887413	.	+	.	ID=Os01t0800266-00;Name=Os01t0800266-00;Locus_id=Os01g0800266;CGSNL Gene Symbol=PGK1;CGSNL Gene Name=PHOSPHOGLYCERATE KINASE 1;Oryzabase Gene Symbol Synonym(s)=OsPGK1;Oryzabase Gene Name Synonym(s)=Phosphoglycerate kinase 1%2C Phosphoglycerate kinase-1;Note=Similar to Phosphoglycerate kinase.;Transcript_evidence=BT061800 (DDBJ);ORF_evidence=C0HHJ4 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Molecular Function: phosphoglycerate kinase activity (GO:0004618);InterPro=Phosphoglycerate kinase (IPR001576),Phosphoglycerate kinase%2C N-terminal (IPR015824),Phosphoglycerate kinase%2C C-terminal (IPR015901),Phosphoglycerate kinase%2C conserved site (IPR015911);Oryzabase=20394;TENOR=Os01t0800266-00;KEGG=Os01t0800266-00 (EC:2.7.2.3)
Chr01	irgsp1_rep	CDS	33884788	33885324	.	+	0	Parent=Os01t0800266-00
Chr01	irgsp1_rep	CDS	33886531	33886848	.	+	0	Parent=Os01t0800266-00
Chr01	irgsp1_rep	CDS	33886991	33887086	.	+	0	Parent=Os01t0800266-00
Chr01	irgsp1_rep	three_prime_UTR	33887087	33887149	.	+	.	Parent=Os01t0800266-00
Chr01	irgsp1_rep	three_prime_UTR	33887219	33887413	.	+	.	Parent=Os01t0800266-00
Chr01	irgsp1_rep	mRNA	33890100	33891727	.	-	.	ID=Os01t0800300-01;Name=Os01t0800300-01;Locus_id=Os01g0800300;Note=Immunoglobulin/major histocompatibility complex%2C conserved site domain containing protein.;Transcript_evidence=AK100951 (DDBJ%2C Best hit);ORF_evidence=A2WW10 (UniProt);NIAS_FLcDNA=J023139J15;Expression=AK100951;TENOR=Os01t0800300-01;KEGG=Os01t0800300-01
Chr01	irgsp1_rep	five_prime_UTR	33891326	33891727	.	-	.	Parent=Os01t0800300-01
Chr01	irgsp1_rep	CDS	33890336	33891325	.	-	0	Parent=Os01t0800300-01
Chr01	irgsp1_rep	three_prime_UTR	33890100	33890335	.	-	.	Parent=Os01t0800300-01
Chr01	irgsp1_rep	mRNA	33890098	33891472	.	-	.	ID=Os01t0800300-02;Name=Os01t0800300-02;Locus_id=Os01g0800300;Note=Immunoglobulin/major histocompatibility complex%2C conserved site domain containing protein.;Transcript_evidence=AK072549 (DDBJ%2C Best hit),AK106023 (DDBJ%2C Best hit);ORF_evidence=A2WW10 (UniProt);NIAS_FLcDNA=J023127J16,001-206-C07;Expression=AK072549;TENOR=Os01t0800300-02;KEGG=Os01t0800300-02
Chr01	irgsp1_rep	five_prime_UTR	33891326	33891472	.	-	.	Parent=Os01t0800300-02
Chr01	irgsp1_rep	CDS	33890336	33891325	.	-	0	Parent=Os01t0800300-02
Chr01	irgsp1_rep	three_prime_UTR	33890098	33890335	.	-	.	Parent=Os01t0800300-02
Chr01	irgsp1_rep	mRNA	33890104	33891417	.	-	.	ID=Os01t0800300-03;Name=Os01t0800300-03;Locus_id=Os01g0800300;Note=Immunoglobulin/major histocompatibility complex%2C conserved site domain containing protein.;Transcript_evidence=AK100942 (DDBJ%2C Best hit);ORF_evidence=A2WW10 (UniProt);NIAS_FLcDNA=J023138D05;TENOR=Os01t0800300-03;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	33891326	33891417	.	-	.	Parent=Os01t0800300-03
Chr01	irgsp1_rep	CDS	33890336	33891325	.	-	0	Parent=Os01t0800300-03
Chr01	irgsp1_rep	three_prime_UTR	33890104	33890335	.	-	.	Parent=Os01t0800300-03
Chr01	irgsp1_rep	mRNA	33893760	33895996	.	+	.	ID=Os01t0800400-01;Name=Os01t0800400-01;Locus_id=Os01g0800400;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK063447 (DDBJ%2C Best hit);ORF_evidence=B8AAW0 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=001-115-F08;Expression=AK063447;TENOR=Os01t0800400-01;KEGG=Os01t0800400-01
Chr01	irgsp1_rep	five_prime_UTR	33893760	33893830	.	+	.	Parent=Os01t0800400-01
Chr01	irgsp1_rep	CDS	33893831	33895153	.	+	0	Parent=Os01t0800400-01
Chr01	irgsp1_rep	three_prime_UTR	33895154	33895480	.	+	.	Parent=Os01t0800400-01
Chr01	irgsp1_rep	three_prime_UTR	33895597	33895996	.	+	.	Parent=Os01t0800400-01
Chr01	irgsp1_rep	mRNA	33897380	33904345	.	+	.	ID=Os01t0800500-01;Name=Os01t0800500-01;Locus_id=Os01g0800500;CGSNL Gene Symbol=PAP9B;CGSNL Gene Name=PURPLE ACID PHOSPHATASE 9B;Oryzabase Gene Symbol Synonym(s)=OsPAP9b;Oryzabase Gene Name Synonym(s)=purple acid phosphatase 9b;Note=Purple acid phosphatase%2C N-terminal domain containing protein.;Transcript_evidence=AK066643 (DDBJ%2C Best hit);ORF_evidence=NP_001147790.1 (RefSeq);GO=Molecular Function: acid phosphatase activity (GO:0003993),Molecular Function: protein binding (GO:0005515),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: metal ion binding (GO:0046872);InterPro=Fibronectin%2C type III (IPR003961),Metallophosphoesterase domain (IPR004843),Purple acid phosphatase-like%2C N-terminal (IPR008963),Purple acid phosphatase%2C N-terminal (IPR015914);NIAS_FLcDNA=J013071K14;Oryzabase=11381;Expression=AK066643;TENOR=Os01t0800500-01;KEGG=Os01t0800500-01
Chr01	irgsp1_rep	five_prime_UTR	33897380	33897474	.	+	.	Parent=Os01t0800500-01
Chr01	irgsp1_rep	CDS	33897475	33897776	.	+	0	Parent=Os01t0800500-01
Chr01	irgsp1_rep	CDS	33897913	33898000	.	+	1	Parent=Os01t0800500-01
Chr01	irgsp1_rep	CDS	33900995	33901264	.	+	0	Parent=Os01t0800500-01
Chr01	irgsp1_rep	CDS	33901358	33901466	.	+	0	Parent=Os01t0800500-01
Chr01	irgsp1_rep	CDS	33901575	33901692	.	+	2	Parent=Os01t0800500-01
Chr01	irgsp1_rep	CDS	33901793	33901925	.	+	1	Parent=Os01t0800500-01
Chr01	irgsp1_rep	CDS	33902048	33902235	.	+	0	Parent=Os01t0800500-01
Chr01	irgsp1_rep	CDS	33902308	33902494	.	+	1	Parent=Os01t0800500-01
Chr01	irgsp1_rep	CDS	33902592	33902659	.	+	0	Parent=Os01t0800500-01
Chr01	irgsp1_rep	CDS	33902835	33902928	.	+	1	Parent=Os01t0800500-01
Chr01	irgsp1_rep	CDS	33903026	33903217	.	+	0	Parent=Os01t0800500-01
Chr01	irgsp1_rep	CDS	33903398	33903478	.	+	0	Parent=Os01t0800500-01
Chr01	irgsp1_rep	CDS	33904105	33904167	.	+	0	Parent=Os01t0800500-01
Chr01	irgsp1_rep	three_prime_UTR	33904168	33904345	.	+	.	Parent=Os01t0800500-01
Chr01	irgsp1_rep	mRNA	33906337	33906762	.	+	.	ID=Os01t0800600-00;Name=Os01t0800600-00;Locus_id=Os01g0800600;Oryzabase Gene Symbol Synonym(s)=OsLTPd9%2C OsLtpVI.1;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein d9%2C lipid transfer protein d9%2C type D non-specific lipid transfer protein 9;Note=Similar to 5a2 protein.;Transcript_evidence=BT008955 (DDBJ);ORF_evidence=B4FFB8 (UniProt);InterPro=Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);Oryzabase=13550;TENOR=Os01t0800600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	33906337	33906762	.	+	0	Parent=Os01t0800600-00
Chr01	irgsp1_rep	mRNA	33911374	33911703	.	-	.	ID=Os01t0800701-00;Name=Os01t0800701-00;Locus_id=Os01g0800701;Note=Non-protein coding transcript.;Transcript_evidence=BT016365 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0800701-00
Chr01	irgsp1_rep	exon	33911374	33911703	.	-	.	Parent=Os01t0800701-00
Chr01	irgsp1_rep	mRNA	33913713	33914616	.	+	.	ID=Os01t0800800-01;Name=Os01t0800800-01;Locus_id=Os01g0800800;Note=Hypothetical protein.;Transcript_evidence=AK108093 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=002-139-A05;Expression=AK108093;TENOR=Os01t0800800-01;KEGG=Os01t0800800-01
Chr01	irgsp1_rep	five_prime_UTR	33913713	33913759	.	+	.	Parent=Os01t0800800-01
Chr01	irgsp1_rep	CDS	33913760	33914455	.	+	0	Parent=Os01t0800800-01
Chr01	irgsp1_rep	three_prime_UTR	33914456	33914616	.	+	.	Parent=Os01t0800800-01
Chr01	irgsp1_rep	mRNA	33917599	33918536	.	+	.	ID=Os01t0800900-01;Name=Os01t0800900-01;Locus_id=Os01g0800900;Oryzabase Gene Symbol Synonym(s)=Os_F0743;Note=Conserved hypothetical protein.;Transcript_evidence=AK241889 (DDBJ%2C Best hit);ORF_evidence=NP_001172607.1 (RefSeq);NIAS_FLcDNA=J075003L01;Oryzabase=17476;TENOR=Os01t0800900-01;KEGG=Os01t0800900-01
Chr01	irgsp1_rep	CDS	33917599	33918435	.	+	0	Parent=Os01t0800900-01
Chr01	irgsp1_rep	three_prime_UTR	33918436	33918536	.	+	.	Parent=Os01t0800900-01
Chr01	irgsp1_rep	mRNA	33919478	33924307	.	-	.	ID=Os01t0800950-00;Name=Os01t0800950-00;Locus_id=Os01g0800950;Note=Non-protein coding transcript.;Transcript_evidence=tplb0060l13 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os01t0800950-00
Chr01	irgsp1_rep	exon	33924150	33924307	.	-	.	Parent=Os01t0800950-00
Chr01	irgsp1_rep	exon	33923447	33923603	.	-	.	Parent=Os01t0800950-00
Chr01	irgsp1_rep	exon	33923070	33923150	.	-	.	Parent=Os01t0800950-00
Chr01	irgsp1_rep	exon	33922418	33922463	.	-	.	Parent=Os01t0800950-00
Chr01	irgsp1_rep	exon	33922204	33922337	.	-	.	Parent=Os01t0800950-00
Chr01	irgsp1_rep	exon	33921905	33922046	.	-	.	Parent=Os01t0800950-00
Chr01	irgsp1_rep	exon	33921484	33921752	.	-	.	Parent=Os01t0800950-00
Chr01	irgsp1_rep	exon	33921215	33921416	.	-	.	Parent=Os01t0800950-00
Chr01	irgsp1_rep	exon	33920419	33920511	.	-	.	Parent=Os01t0800950-00
Chr01	irgsp1_rep	exon	33920229	33920328	.	-	.	Parent=Os01t0800950-00
Chr01	irgsp1_rep	exon	33919982	33920134	.	-	.	Parent=Os01t0800950-00
Chr01	irgsp1_rep	exon	33919478	33919552	.	-	.	Parent=Os01t0800950-00
Chr01	irgsp1_rep	mRNA	33919497	33924589	.	+	.	ID=Os01t0801000-01;Name=Os01t0801000-01;Locus_id=Os01g0801000;Oryzabase Gene Name Synonym(s)=AP endonuclease;Note=Similar to Apurinic endonuclease-redox protein (DNA-(apurinic or apyrimidinic site) lyase) (EC 4.2.99.18).;Transcript_evidence=AK101426 (DDBJ%2C Best hit),AK064082 (DDBJ%2C Best hit);ORF_evidence=B6SHI7 (UniProt);GO=Biological Process: DNA repair (GO:0006281),Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: nuclease activity (GO:0004518),Molecular Function: endonuclease activity (GO:0004519);InterPro=AP endonuclease%2C family 1 (IPR000097),DNA-binding SAP (IPR003034),Exodeoxyribonuclease III xth (IPR004808),Endonuclease/exonuclease/phosphatase (IPR005135),AP endonuclease%2C family 1%2C binding site (IPR020847),AP endonuclease%2C family 1%2C conserved site (IPR020848);NIAS_FLcDNA=J033038E19,002-100-B04;Oryzabase=21280;Expression=AK101426;TENOR=Os01t0801000-01;KEGG=Os01t0801000-01 (EC:3.1.11.2%2C EC:4.2.99.18)
Chr01	irgsp1_rep	five_prime_UTR	33919497	33919514	.	+	.	Parent=Os01t0801000-01
Chr01	irgsp1_rep	CDS	33919515	33919558	.	+	0	Parent=Os01t0801000-01
Chr01	irgsp1_rep	CDS	33919987	33920143	.	+	1	Parent=Os01t0801000-01
Chr01	irgsp1_rep	CDS	33920234	33920331	.	+	0	Parent=Os01t0801000-01
Chr01	irgsp1_rep	CDS	33920422	33920486	.	+	1	Parent=Os01t0801000-01
Chr01	irgsp1_rep	CDS	33921202	33921423	.	+	2	Parent=Os01t0801000-01
Chr01	irgsp1_rep	CDS	33921520	33921769	.	+	2	Parent=Os01t0801000-01
Chr01	irgsp1_rep	CDS	33921925	33922039	.	+	1	Parent=Os01t0801000-01
Chr01	irgsp1_rep	CDS	33922194	33922331	.	+	0	Parent=Os01t0801000-01
Chr01	irgsp1_rep	CDS	33922416	33922463	.	+	0	Parent=Os01t0801000-01
Chr01	irgsp1_rep	CDS	33923070	33923150	.	+	0	Parent=Os01t0801000-01
Chr01	irgsp1_rep	CDS	33923447	33923606	.	+	0	Parent=Os01t0801000-01
Chr01	irgsp1_rep	CDS	33924153	33924274	.	+	2	Parent=Os01t0801000-01
Chr01	irgsp1_rep	three_prime_UTR	33924275	33924589	.	+	.	Parent=Os01t0801000-01
Chr01	irgsp1_rep	mRNA	33926609	33929782	.	+	.	ID=Os01t0801100-01;Name=Os01t0801100-01;Locus_id=Os01g0801100;Oryzabase Gene Name Synonym(s)=AP endonuclease;Note=Similar to Apurinic endonuclease-redox protein (DNA-(apurinic or apyrimidinic site) lyase) (EC 4.2.99.18).;Transcript_evidence=AK102132 (DDBJ%2C Best hit);ORF_evidence=B6SHI7 (UniProt);GO=Biological Process: DNA repair (GO:0006281),Cellular Component: intracellular (GO:0005622),Molecular Function: DNA binding (GO:0003677),Molecular Function: nuclease activity (GO:0004518),Molecular Function: endonuclease activity (GO:0004519);InterPro=AP endonuclease%2C family 1 (IPR000097),Exodeoxyribonuclease III xth (IPR004808),Endonuclease/exonuclease/phosphatase (IPR005135),AP endonuclease%2C family 1%2C conserved site (IPR020848);NIAS_FLcDNA=J033085E02;Oryzabase=21281;Expression=AK102132;TENOR=Os01t0801100-01;KEGG=Os01t0801100-01 (EC:3.1.11.2%2C EC:4.2.99.18)
Chr01	irgsp1_rep	five_prime_UTR	33926609	33926734	.	+	.	Parent=Os01t0801100-01
Chr01	irgsp1_rep	five_prime_UTR	33927330	33927359	.	+	.	Parent=Os01t0801100-01
Chr01	irgsp1_rep	CDS	33927360	33927642	.	+	0	Parent=Os01t0801100-01
Chr01	irgsp1_rep	CDS	33927818	33927924	.	+	2	Parent=Os01t0801100-01
Chr01	irgsp1_rep	CDS	33928049	33928186	.	+	0	Parent=Os01t0801100-01
Chr01	irgsp1_rep	CDS	33928284	33928331	.	+	0	Parent=Os01t0801100-01
Chr01	irgsp1_rep	CDS	33928501	33928581	.	+	0	Parent=Os01t0801100-01
Chr01	irgsp1_rep	CDS	33928726	33928879	.	+	0	Parent=Os01t0801100-01
Chr01	irgsp1_rep	CDS	33929395	33929516	.	+	2	Parent=Os01t0801100-01
Chr01	irgsp1_rep	three_prime_UTR	33929517	33929782	.	+	.	Parent=Os01t0801100-01
Chr01	irgsp1_rep	mRNA	33927417	33929516	.	-	.	ID=Os01t0801150-00;Name=Os01t0801150-00;Locus_id=Os01g0801150;Note=Non-protein coding transcript.;Transcript_evidence=tplb0060l13 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os01t0801150-00
Chr01	irgsp1_rep	exon	33929376	33929516	.	-	.	Parent=Os01t0801150-00
Chr01	irgsp1_rep	exon	33928734	33928862	.	-	.	Parent=Os01t0801150-00
Chr01	irgsp1_rep	exon	33928463	33928589	.	-	.	Parent=Os01t0801150-00
Chr01	irgsp1_rep	exon	33927971	33928192	.	-	.	Parent=Os01t0801150-00
Chr01	irgsp1_rep	exon	33927417	33927673	.	-	.	Parent=Os01t0801150-00
Chr01	irgsp1_rep	mRNA	33930232	33932942	.	-	.	ID=Os01t0801200-01;Name=Os01t0801200-01;Locus_id=Os01g0801200;Note=Conserved hypothetical protein.;Transcript_evidence=AK112093 (DDBJ%2C Best hit);ORF_evidence=B8AAW6 (UniProt);NIAS_FLcDNA=002-107-C01;TENOR=Os01t0801200-01
Chr01	irgsp1_rep	five_prime_UTR	33932591	33932942	.	-	.	Parent=Os01t0801200-01
Chr01	irgsp1_rep	CDS	33932512	33932590	.	-	0	Parent=Os01t0801200-01
Chr01	irgsp1_rep	CDS	33930475	33931421	.	-	2	Parent=Os01t0801200-01
Chr01	irgsp1_rep	three_prime_UTR	33930232	33930474	.	-	.	Parent=Os01t0801200-01
Chr01	irgsp1_rep	mRNA	33930232	33932914	.	-	.	ID=Os01t0801200-02;Name=Os01t0801200-02;Locus_id=Os01g0801200;Note=Conserved hypothetical protein.;Transcript_evidence=AK111895 (DDBJ%2C Best hit);ORF_evidence=B8AAW6 (UniProt);NIAS_FLcDNA=J033073E03;TENOR=Os01t0801200-02
Chr01	irgsp1_rep	five_prime_UTR	33932591	33932914	.	-	.	Parent=Os01t0801200-02
Chr01	irgsp1_rep	CDS	33932512	33932590	.	-	0	Parent=Os01t0801200-02
Chr01	irgsp1_rep	CDS	33930475	33931421	.	-	2	Parent=Os01t0801200-02
Chr01	irgsp1_rep	three_prime_UTR	33930232	33930474	.	-	.	Parent=Os01t0801200-02
Chr01	irgsp1_rep	mRNA	33949387	33951631	.	-	.	ID=Os01t0801500-01;Name=Os01t0801500-01;Locus_id=Os01g0801500;CGSNL Gene Symbol=GNS7;CGSNL Gene Name=BETA-1%2C3-GLUCANASE 7;Oryzabase Gene Symbol Synonym(s)=Gns7%2C OsGns7;Oryzabase Gene Name Synonym(s)=beta-1%2C 3-glucanase 7;Note=Beta-1%2C3-glucanase precursor.;Transcript_evidence=AK060529 (DDBJ%2C Best hit),AK099192 (DDBJ%2C Best hit);ORF_evidence=Q9ZNY8 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-020-H06,J023110B18;Oryzabase=13925;TENOR=Os01t0801500-01
Chr01	irgsp1_rep	five_prime_UTR	33951554	33951631	.	-	.	Parent=Os01t0801500-01
Chr01	irgsp1_rep	CDS	33951490	33951553	.	-	0	Parent=Os01t0801500-01
Chr01	irgsp1_rep	CDS	33949583	33950532	.	-	2	Parent=Os01t0801500-01
Chr01	irgsp1_rep	three_prime_UTR	33949387	33949582	.	-	.	Parent=Os01t0801500-01
Chr01	irgsp1_rep	mRNA	33952187	33956006	.	-	.	ID=Os01t0801600-01;Name=Os01t0801600-01;Locus_id=Os01g0801600;Note=Similar to Glycerol-3-phosphate dehydrogenase.;Transcript_evidence=AK073318 (DDBJ%2C Best hit);ORF_evidence=B6TIZ1 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: glycerol-3-phosphate metabolic process (GO:0006072),Biological Process: glycerol-3-phosphate catabolic process (GO:0046168),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: cytoplasm (GO:0005737),Cellular Component: glycerol-3-phosphate dehydrogenase complex (GO:0009331),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: glycerol-3-phosphate dehydrogenase [NAD+] activity (GO:0004367),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: coenzyme binding (GO:0050662),Molecular Function: NAD binding (GO:0051287);InterPro=Glycerol-3-phosphate dehydrogenase%2C NAD-dependent%2C C-terminal (IPR006109),Glycerol-3-phosphate dehydrogenase%2C NAD-dependent (IPR006168),6-phosphogluconate dehydrogenase%2C C-terminal-like (IPR008927),Glycerol-3-phosphate dehydrogenase%2C NAD-dependent%2C N-terminal (IPR011128),Dehydrogenase%2C multihelical (IPR013328),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033025P14;TENOR=Os01t0801600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	33955790	33956006	.	-	.	Parent=Os01t0801600-01
Chr01	irgsp1_rep	five_prime_UTR	33955582	33955619	.	-	.	Parent=Os01t0801600-01
Chr01	irgsp1_rep	CDS	33954930	33955581	.	-	0	Parent=Os01t0801600-01
Chr01	irgsp1_rep	CDS	33954097	33954318	.	-	2	Parent=Os01t0801600-01
Chr01	irgsp1_rep	CDS	33953490	33953737	.	-	2	Parent=Os01t0801600-01
Chr01	irgsp1_rep	CDS	33953244	33953383	.	-	0	Parent=Os01t0801600-01
Chr01	irgsp1_rep	CDS	33952423	33952564	.	-	1	Parent=Os01t0801600-01
Chr01	irgsp1_rep	three_prime_UTR	33952187	33952422	.	-	.	Parent=Os01t0801600-01
Chr01	irgsp1_rep	mRNA	33956754	33960102	.	-	.	ID=Os01t0801700-01;Name=Os01t0801700-01;Locus_id=Os01g0801700;RAP-DB Gene Symbol Synonym(s)=OsGCD1;RAP-DB Gene Name Synonym(s)=GAMETE CELLS DEFECTIVE1;CGSNL Gene Symbol=GCD1;CGSNL Gene Name=GAMETE CELLS DEFECTIVE 1;Oryzabase Gene Symbol Synonym(s)=OsGCD1;Oryzabase Gene Name Synonym(s)=GAMETE CELLS DEFECTIVE1;Note=Homolog of Arabidopsis GCD1 (GAMETE CELLS DEFECTIVE1)%2C Early embryogenesis and endosperm development;Transcript_evidence=AK073813;ORF_evidence=Q8S2G4;InterPro=Ribosomal protein L20%2C mitochondrial (IPR024388);NIAS_FLcDNA=J033067K14;Manual Curation=June 9%2C 2017;Literature_PMID=28585692;Oryzabase=21876;Expression=AK073813;TENOR=Os01t0801700-01;KEGG=Os01t0801700-01;Subcellular location=mitochondrion (GO:0005739)
Chr01	irgsp1_rep	five_prime_UTR	33960076	33960102	.	-	.	Parent=Os01t0801700-01
Chr01	irgsp1_rep	CDS	33959456	33960075	.	-	0	Parent=Os01t0801700-01
Chr01	irgsp1_rep	CDS	33957864	33958053	.	-	1	Parent=Os01t0801700-01
Chr01	irgsp1_rep	CDS	33957219	33957446	.	-	0	Parent=Os01t0801700-01
Chr01	irgsp1_rep	three_prime_UTR	33956754	33957218	.	-	.	Parent=Os01t0801700-01
Chr01	irgsp1_rep	mRNA	33960315	33961060	.	+	.	ID=Os01t0801800-01;Name=Os01t0801800-01;Locus_id=Os01g0801800;Note=Hypothetical gene.;Transcript_evidence=AK073630 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033052J20;Expression=AK073630;TENOR=Os01t0801800-01;KEGG=Os01t0801800-01
Chr01	irgsp1_rep	CDS	33960315	33960746	.	+	0	Parent=Os01t0801800-01
Chr01	irgsp1_rep	three_prime_UTR	33960747	33961060	.	+	.	Parent=Os01t0801800-01
Chr01	irgsp1_rep	mRNA	33961844	33963347	.	+	.	ID=Os01t0801901-00;Name=Os01t0801901-00;Locus_id=Os01g0801901;CGSNL Gene Symbol=BZIP7;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 7;Oryzabase Gene Symbol Synonym(s)=OsbZIP07%2C OsbZIP7;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 07;Note=Similar to Transcription factor (Fragment).;Transcript_evidence=AK354846 (DDBJ);ORF_evidence=D6MKB2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),Basic leucine zipper (IPR011700);Oryzabase=10097;TENOR=Os01t0801901-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	33961844	33962025	.	+	.	Parent=Os01t0801901-00
Chr01	irgsp1_rep	five_prime_UTR	33962126	33962218	.	+	.	Parent=Os01t0801901-00
Chr01	irgsp1_rep	five_prime_UTR	33962400	33962441	.	+	.	Parent=Os01t0801901-00
Chr01	irgsp1_rep	CDS	33962442	33963116	.	+	0	Parent=Os01t0801901-00
Chr01	irgsp1_rep	three_prime_UTR	33963117	33963347	.	+	.	Parent=Os01t0801901-00
Chr01	irgsp1_rep	mRNA	33968744	33970803	.	+	.	ID=Os01t0802000-01;Name=Os01t0802000-01;Locus_id=Os01g0802000;Oryzabase Gene Symbol Synonym(s)=OsRFPH2-12;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPH2-12%2C RING-H2 protein 12;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK103314 (DDBJ%2C Best hit);ORF_evidence=B6T839 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J033125G22;Oryzabase=11773;Expression=AK103314;TENOR=Os01t0802000-01;KEGG=Os01t0802000-01 (EC:6.3.2.19)
Chr01	irgsp1_rep	five_prime_UTR	33968744	33968987	.	+	.	Parent=Os01t0802000-01
Chr01	irgsp1_rep	five_prime_UTR	33969550	33969554	.	+	.	Parent=Os01t0802000-01
Chr01	irgsp1_rep	CDS	33969555	33970544	.	+	0	Parent=Os01t0802000-01
Chr01	irgsp1_rep	three_prime_UTR	33970545	33970803	.	+	.	Parent=Os01t0802000-01
Chr01	irgsp1_rep	mRNA	33971226	33976464	.	+	.	ID=Os01t0802100-01;Name=Os01t0802100-01;Locus_id=Os01g0802100;RAP-DB Gene Symbol Synonym(s)=OsIspE%2C IspE%2C OsCMK%2C CMK;RAP-DB Gene Name Synonym(s)=4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;Oryzabase Gene Symbol Synonym(s)=OsCMK%2C CMK%2C OsIspE%2C IspE;Oryzabase Gene Name Synonym(s)=4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase%2C CDP-ME kinase%2C 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase%2C green-revertible yellow leaf 340;Note=4-diphosphocytidyl-2-C-methyl-D-erythritol kinase%2C Isoprenoid biosynthesis%2C Chloroplast development;Transcript_evidence=AK067589;ORF_evidence=Q8S2G0;GO=Biological Process: terpenoid biosynthetic process (GO:0016114),Molecular Function: ATP binding (GO:0005524),Molecular Function: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity (GO:0050515);InterPro=Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Ribosomal protein S5 domain 2-type fold (IPR020568),GHMP kinase%2C C-terminal domain superfamily (IPR036554),4-diphosphocytidyl-2C-methyl-D-erythritol kinase (IPR004424),GHMP kinase N-terminal domain (IPR006204);NIAS_FLcDNA=J013111G19;Manual Curation=September 14%2C 2018;Literature_PMID=29893915;Oryzabase=14690;Expression=AK067589;TENOR=Os01t0802100-01;KEGG=Os01t0802100-01 (EC:2.7.1.148);Subcellular location=chloroplast (GO:0009507)
Chr01	irgsp1_rep	five_prime_UTR	33971226	33971311	.	+	.	Parent=Os01t0802100-01
Chr01	irgsp1_rep	CDS	33971312	33971500	.	+	0	Parent=Os01t0802100-01
Chr01	irgsp1_rep	CDS	33972406	33972501	.	+	0	Parent=Os01t0802100-01
Chr01	irgsp1_rep	CDS	33972597	33972665	.	+	0	Parent=Os01t0802100-01
Chr01	irgsp1_rep	CDS	33973386	33973490	.	+	0	Parent=Os01t0802100-01
Chr01	irgsp1_rep	CDS	33973594	33973650	.	+	0	Parent=Os01t0802100-01
Chr01	irgsp1_rep	CDS	33973807	33974007	.	+	0	Parent=Os01t0802100-01
Chr01	irgsp1_rep	CDS	33974657	33974749	.	+	0	Parent=Os01t0802100-01
Chr01	irgsp1_rep	CDS	33974812	33974911	.	+	0	Parent=Os01t0802100-01
Chr01	irgsp1_rep	CDS	33975064	33975163	.	+	2	Parent=Os01t0802100-01
Chr01	irgsp1_rep	CDS	33975611	33975696	.	+	1	Parent=Os01t0802100-01
Chr01	irgsp1_rep	CDS	33976036	33976145	.	+	2	Parent=Os01t0802100-01
Chr01	irgsp1_rep	three_prime_UTR	33976146	33976464	.	+	.	Parent=Os01t0802100-01
Chr01	irgsp1_rep	mRNA	33976537	33977291	.	-	.	ID=Os01t0802200-01;Name=Os01t0802200-01;Locus_id=Os01g0802200;Note=Conserved hypothetical protein.;Transcript_evidence=AK062699 (DDBJ%2C Best hit);ORF_evidence=A2WW28 (UniProt);NIAS_FLcDNA=001-106-A12;Expression=AK062699;TENOR=Os01t0802200-01;KEGG=Os01t0802200-01
Chr01	irgsp1_rep	five_prime_UTR	33977181	33977291	.	-	.	Parent=Os01t0802200-01
Chr01	irgsp1_rep	CDS	33976752	33977180	.	-	0	Parent=Os01t0802200-01
Chr01	irgsp1_rep	three_prime_UTR	33976537	33976751	.	-	.	Parent=Os01t0802200-01
Chr01	irgsp1_rep	mRNA	33990770	33992873	.	-	.	ID=Os01t0802400-00;Name=Os01t0802400-00;Locus_id=Os01g0802400;Note=Similar to HAT family dimerisation domain containing protein.;Transcript_evidence=AK288170 (DDBJ%2C Secondary hit);ORF_evidence=Q53RM1 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein dimerization activity (GO:0046983);InterPro=HAT dimerisation (IPR008906),Ribonuclease H-like (IPR012337);TENOR=Os01t0802400-00;KEGG=Os01t0802400-00
Chr01	irgsp1_rep	five_prime_UTR	33992872	33992873	.	-	.	Parent=Os01t0802400-00
Chr01	irgsp1_rep	CDS	33992269	33992871	.	-	0	Parent=Os01t0802400-00
Chr01	irgsp1_rep	three_prime_UTR	33990770	33992268	.	-	.	Parent=Os01t0802400-00
Chr01	irgsp1_rep	mRNA	33996722	33998005	.	+	.	ID=Os01t0802600-00;Name=Os01t0802600-00;Locus_id=Os01g0802600;Note=Similar to Circadian clock coupling factor ZGT.;Transcript_evidence=AK366950 (DDBJ);ORF_evidence=Q94FM9 (UniProt);TENOR=Os01t0802600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	33996722	33997099	.	+	.	Parent=Os01t0802600-00
Chr01	irgsp1_rep	CDS	33997100	33998005	.	+	0	Parent=Os01t0802600-00
Chr01	irgsp1_rep	mRNA	34003692	34006460	.	-	.	ID=Os01t0802700-01;Name=Os01t0802700-01;Locus_id=Os01g0802700;RAP-DB Gene Symbol Synonym(s)=OsPIN9;CGSNL Gene Symbol=PIN9;CGSNL Gene Name=PIN PROTEIN 9;Oryzabase Gene Symbol Synonym(s)=OsPIN9;Note=Auxin efflux transporter%2C Regulation of ammonium-induced rice tiller bud elongation;Transcript_evidence=AK059229;ORF_evidence=Q5VQY3;GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral component of membrane (GO:0016021);InterPro=Membrane transport protein (IPR004776),Auxin efflux carrier%2C plant type (IPR014024);NIAS_FLcDNA=001-024-E02;Manual Curation=September 1%2C 2020;Literature_PMID=32865276;Oryzabase=8966;Expression=AK059229;TENOR=Os01t0802700-01;KEGG=Os01t0802700-01;Subcellular location=plasma membrane (GO:0005886)
Chr01	irgsp1_rep	five_prime_UTR	34006309	34006460	.	-	.	Parent=Os01t0802700-01
Chr01	irgsp1_rep	CDS	34005416	34006308	.	-	0	Parent=Os01t0802700-01
Chr01	irgsp1_rep	CDS	34005148	34005233	.	-	1	Parent=Os01t0802700-01
Chr01	irgsp1_rep	CDS	34004842	34004999	.	-	2	Parent=Os01t0802700-01
Chr01	irgsp1_rep	CDS	34004172	34004248	.	-	0	Parent=Os01t0802700-01
Chr01	irgsp1_rep	CDS	34003994	34004060	.	-	1	Parent=Os01t0802700-01
Chr01	irgsp1_rep	three_prime_UTR	34003692	34003993	.	-	.	Parent=Os01t0802700-01
Chr01	irgsp1_rep	mRNA	34017713	34019239	.	-	.	ID=Os01t0802850-00;Name=Os01t0802850-00;Locus_id=Os01g0802850;Note=Protein of unknown function DUF250 domain containing protein.;Transcript_evidence=CU406492 (DDBJ%2C Best hit);ORF_evidence=B6T4P7 (UniProt);InterPro=Domain of unknown function DUF250 (IPR004853);TENOR=Os01t0802850-00;KEGG=Os01t0802850-00
Chr01	irgsp1_rep	five_prime_UTR	34018961	34019239	.	-	.	Parent=Os01t0802850-00
Chr01	irgsp1_rep	CDS	34017875	34018960	.	-	0	Parent=Os01t0802850-00
Chr01	irgsp1_rep	three_prime_UTR	34017713	34017874	.	-	.	Parent=Os01t0802850-00
Chr01	irgsp1_rep	mRNA	34017557	34019231	.	+	.	ID=Os01t0802900-01;Name=Os01t0802900-01;Locus_id=Os01g0802900;Note=Hypothetical protein.;Transcript_evidence=AK241162 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065116A05;TENOR=Os01t0802900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	34017557	34018832	.	+	.	Parent=Os01t0802900-01
Chr01	irgsp1_rep	CDS	34018833	34019129	.	+	0	Parent=Os01t0802900-01
Chr01	irgsp1_rep	three_prime_UTR	34019130	34019231	.	+	.	Parent=Os01t0802900-01
Chr01	irgsp1_rep	mRNA	34033159	34034924	.	+	.	ID=Os01t0803200-01;Name=Os01t0803200-01;Locus_id=Os01g0803200;CGSNL Gene Symbol=OC1;CGSNL Gene Name=ORYZACYSTATIN 1;Oryzabase Gene Symbol Synonym(s)=Oc1*%2C Oc1%2C OC-I%2C SPOC-I%2C OsCP1%2C Oc%2C OCI%2C OsCYS1;Oryzabase Gene Name Synonym(s)=Oryzacystatin1%2C Oryzacystatin-1%2C Oryzacystatin I%2C Oryzacystatin-I%2C Cysteine proteinase inhibitor 1%2C cystatin-I%2C oryzacystatin;Note=Cysteine proteinase inhibitor-I (Oryzacystatin-I).;Transcript_evidence=AK061770 (DDBJ%2C Best hit);ORF_evidence=A5HMM9 (UniProt);GO=Molecular Function: cysteine-type endopeptidase inhibitor activity (GO:0004869);InterPro=Proteinase inhibitor I25%2C cystatin (IPR000010),Proteinase inhibitor I25%2C cystatin%2C conserved site (IPR018073),Proteinase inhibitor I25%2C cystatin%2C conserved region (IPR020381);NIAS_FLcDNA=001-039-C07;Oryzabase=444;Expression=AK061770;TENOR=Os01t0803200-01;KEGG=Os01t0803200-01
Chr01	irgsp1_rep	five_prime_UTR	34033159	34033286	.	+	.	Parent=Os01t0803200-01
Chr01	irgsp1_rep	CDS	34033287	34033514	.	+	0	Parent=Os01t0803200-01
Chr01	irgsp1_rep	CDS	34033851	34034045	.	+	0	Parent=Os01t0803200-01
Chr01	irgsp1_rep	three_prime_UTR	34034046	34034046	.	+	.	Parent=Os01t0803200-01
Chr01	irgsp1_rep	three_prime_UTR	34034416	34034924	.	+	.	Parent=Os01t0803200-01
Chr01	irgsp1_rep	mRNA	34033297	34034690	.	+	.	ID=Os01t0803200-02;Name=Os01t0803200-02;Locus_id=Os01g0803200;CGSNL Gene Symbol=OC1;CGSNL Gene Name=ORYZACYSTATIN 1;Oryzabase Gene Symbol Synonym(s)=Oc1*%2C Oc1%2C OC-I%2C SPOC-I%2C OsCP1%2C Oc%2C OCI%2C OsCYS1;Oryzabase Gene Name Synonym(s)=Oryzacystatin1%2C Oryzacystatin-1%2C Oryzacystatin I%2C Oryzacystatin-I%2C Cysteine proteinase inhibitor 1%2C cystatin-I%2C oryzacystatin;Note=Similar to Cysteine protease inhibitor.;Transcript_evidence=AK121632 (DDBJ%2C Best hit),AK072206 (DDBJ%2C Best hit);ORF_evidence=A5HMM9 (UniProt);GO=Molecular Function: cysteine-type endopeptidase inhibitor activity (GO:0004869);InterPro=Proteinase inhibitor I25%2C cystatin (IPR000010),Proteinase inhibitor I25%2C cystatin%2C conserved site (IPR018073),Proteinase inhibitor I25%2C cystatin%2C conserved region (IPR020381);NIAS_FLcDNA=J033050G08,J013168F15;Oryzabase=444;TENOR=Os01t0803200-02
Chr01	irgsp1_rep	five_prime_UTR	34033297	34033298	.	+	.	Parent=Os01t0803200-02
Chr01	irgsp1_rep	CDS	34033299	34033514	.	+	0	Parent=Os01t0803200-02
Chr01	irgsp1_rep	CDS	34033851	34034045	.	+	0	Parent=Os01t0803200-02
Chr01	irgsp1_rep	three_prime_UTR	34034046	34034046	.	+	.	Parent=Os01t0803200-02
Chr01	irgsp1_rep	three_prime_UTR	34034416	34034690	.	+	.	Parent=Os01t0803200-02
Chr01	irgsp1_rep	mRNA	34043179	34044975	.	-	.	ID=Os01t0803300-01;Name=Os01t0803300-01;Locus_id=Os01g0803300;Note=Protein of unknown function DUF6%2C transmembrane domain containing protein.;Transcript_evidence=AK071286 (DDBJ%2C Best hit);ORF_evidence=NP_001150619.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=J023088H01;Expression=AK071286;TENOR=Os01t0803300-01;KEGG=Os01t0803300-01
Chr01	irgsp1_rep	five_prime_UTR	34044975	34044975	.	-	.	Parent=Os01t0803300-01
Chr01	irgsp1_rep	CDS	34044913	34044974	.	-	0	Parent=Os01t0803300-01
Chr01	irgsp1_rep	CDS	34044517	34044633	.	-	1	Parent=Os01t0803300-01
Chr01	irgsp1_rep	CDS	34043980	34044406	.	-	1	Parent=Os01t0803300-01
Chr01	irgsp1_rep	CDS	34043490	34043879	.	-	0	Parent=Os01t0803300-01
Chr01	irgsp1_rep	three_prime_UTR	34043179	34043489	.	-	.	Parent=Os01t0803300-01
Chr01	irgsp1_rep	mRNA	34084757	34086514	.	+	.	ID=Os01t0803800-01;Name=Os01t0803800-01;Locus_id=Os01g0803800;RAP-DB Gene Symbol Synonym(s)=CYP94D12%2C OsCYP94D12;CGSNL Gene Symbol=CYP94D12;CGSNL Gene Name=CYTOCHROME P450 94D12;Oryzabase Gene Symbol Synonym(s)=OsCYP94D12;Oryzabase Gene Name Synonym(s)=CytoChrome P450 94D12;Note=CytoChrome P450 of the CYP94 subfamily;Transcript_evidence=Inferred from literature;ORF_evidence=Q5JN64;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 superfamily (IPR036396),CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);Manual Curation=July 5%2C 2019;Literature_PMID=31240493;Oryzabase=23115;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	34084757	34086283	.	+	0	Parent=Os01t0803800-01
Chr01	irgsp1_rep	three_prime_UTR	34086284	34086514	.	+	.	Parent=Os01t0803800-01
Chr01	irgsp1_rep	mRNA	34089461	34091158	.	+	.	ID=Os01t0803900-01;Name=Os01t0803900-01;Locus_id=Os01g0803900;CGSNL Gene Symbol=CYP94D11;CGSNL Gene Name=CYTOCHROME P450 94D11;Oryzabase Gene Symbol Synonym(s)=OsCYP94D11;Oryzabase Gene Name Synonym(s)=CytoChrome P450 94D11;Note=CytoChrome P450 family protein.;Transcript_evidence=AK243166 (DDBJ%2C Best hit);ORF_evidence=B6UET7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J100035A04;Oryzabase=23110;TENOR=Os01t0803900-01;KEGG=Os01t0803900-01
Chr01	irgsp1_rep	five_prime_UTR	34089461	34089503	.	+	.	Parent=Os01t0803900-01
Chr01	irgsp1_rep	CDS	34089504	34091081	.	+	0	Parent=Os01t0803900-01
Chr01	irgsp1_rep	three_prime_UTR	34091082	34091158	.	+	.	Parent=Os01t0803900-01
Chr01	irgsp1_rep	mRNA	34112913	34117872	.	+	.	ID=Os01t0804150-00;Name=Os01t0804150-00;Locus_id=Os01g0804150;Note=Conserved hypothetical protein.;Transcript_evidence=FP093251 (DDBJ);ORF_evidence=NP_001061898.1 (RefSeq);TENOR=Os01t0804150-00
Chr01	irgsp1_rep	CDS	34112913	34113227	.	+	0	Parent=Os01t0804150-00
Chr01	irgsp1_rep	CDS	34113719	34113745	.	+	0	Parent=Os01t0804150-00
Chr01	irgsp1_rep	three_prime_UTR	34113746	34113899	.	+	.	Parent=Os01t0804150-00
Chr01	irgsp1_rep	three_prime_UTR	34117533	34117872	.	+	.	Parent=Os01t0804150-00
Chr01	irgsp1_rep	mRNA	34099444	34101175	.	+	.	ID=Os01t0804200-01;Name=Os01t0804200-01;Locus_id=Os01g0804200;RAP-DB Gene Symbol Synonym(s)=CYP94D9%2C OsCYP94D9;CGSNL Gene Symbol=CYP94D9;CGSNL Gene Name=CYTOCHROME P450 94D9;Oryzabase Gene Symbol Synonym(s)=OsCYP94D9;Oryzabase Gene Name Synonym(s)=CytoChrome P450 94D9;Note=CytoChrome P450 of the CYP94 subfamily%2C Response to wounding and salt stress;Transcript_evidence=Inferred from literature;ORF_evidence=Q8LRA3;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 superfamily (IPR036396),CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);Manual Curation=July 5%2C 2019;Literature_PMID=31240493;Oryzabase=23108
Chr01	irgsp1_rep	CDS	34099444	34100991	.	+	0	Parent=Os01t0804200-01
Chr01	irgsp1_rep	three_prime_UTR	34100992	34101175	.	+	.	Parent=Os01t0804200-01
Chr01	irgsp1_rep	mRNA	34115002	34116757	.	+	.	ID=Os01t0804400-01;Name=Os01t0804400-01;Locus_id=Os01g0804400;CGSNL Gene Symbol=CYP94D7;CGSNL Gene Name=CYTOCHROME P450 94D7;Oryzabase Gene Symbol Synonym(s)=OsCYP94D7;Oryzabase Gene Name Synonym(s)=CytoChrome P450 94D7;Note=CytoChrome P450 family protein.;Transcript_evidence=AK070931 (DDBJ%2C Best hit);ORF_evidence=B6UET7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J023063B22;Oryzabase=22497;Expression=AK070931;TENOR=Os01t0804400-01;KEGG=Os01t0804400-01
Chr01	irgsp1_rep	five_prime_UTR	34115002	34115101	.	+	.	Parent=Os01t0804400-01
Chr01	irgsp1_rep	CDS	34115102	34116637	.	+	0	Parent=Os01t0804400-01
Chr01	irgsp1_rep	three_prime_UTR	34116638	34116757	.	+	.	Parent=Os01t0804400-01
Chr01	irgsp1_rep	mRNA	34131886	34133448	.	+	.	ID=Os01t0804900-01;Name=Os01t0804900-01;Locus_id=Os01g0804900;CGSNL Gene Symbol=CYP94D6;CGSNL Gene Name=CYTOCHROME P450 94D6;Oryzabase Gene Symbol Synonym(s)=OsCYP94D6;Oryzabase Gene Name Synonym(s)=CytoChrome P450 94D6;Note=Similar to CytoChrome P450.;Transcript_evidence=AK102714 (DDBJ%2C Best hit);ORF_evidence=B6UET7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J033105A13;Oryzabase=23107;Expression=AK102714;TENOR=Os01t0804900-01;KEGG=Os01t0804900-01 (EC:1.14.13.30)
Chr01	irgsp1_rep	five_prime_UTR	34131886	34132550	.	+	.	Parent=Os01t0804900-01
Chr01	irgsp1_rep	CDS	34132551	34133381	.	+	0	Parent=Os01t0804900-01
Chr01	irgsp1_rep	three_prime_UTR	34133382	34133448	.	+	.	Parent=Os01t0804900-01
Chr01	irgsp1_rep	mRNA	34133841	34135636	.	-	.	ID=Os01t0805000-01;Name=Os01t0805000-01;Locus_id=Os01g0805000;Note=50S ribosomal protein L34.;Transcript_evidence=AK287688 (DDBJ%2C Best hit);ORF_evidence=A2WW42 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L34 (IPR000271);NIAS_FLcDNA=J065128B11;TENOR=Os01t0805000-01;KEGG=Os01t0805000-01
Chr01	irgsp1_rep	five_prime_UTR	34135611	34135636	.	-	.	Parent=Os01t0805000-01
Chr01	irgsp1_rep	CDS	34135367	34135610	.	-	0	Parent=Os01t0805000-01
Chr01	irgsp1_rep	CDS	34133993	34134252	.	-	2	Parent=Os01t0805000-01
Chr01	irgsp1_rep	three_prime_UTR	34133841	34133992	.	-	.	Parent=Os01t0805000-01
Chr01	irgsp1_rep	mRNA	34135816	34137582	.	+	.	ID=Os01t0805100-01;Name=Os01t0805100-01;Locus_id=Os01g0805100;Note=Conserved hypothetical protein.;Transcript_evidence=AK064132 (DDBJ%2C Best hit);ORF_evidence=A2ZYS4 (UniProt);NIAS_FLcDNA=002-102-F11;TENOR=Os01t0805100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	34135816	34135882	.	+	0	Parent=Os01t0805100-01
Chr01	irgsp1_rep	CDS	34136277	34137232	.	+	2	Parent=Os01t0805100-01
Chr01	irgsp1_rep	three_prime_UTR	34137233	34137582	.	+	.	Parent=Os01t0805100-01
Chr01	irgsp1_rep	mRNA	34138399	34139709	.	-	.	ID=Os01t0805200-01;Name=Os01t0805200-01;Locus_id=Os01g0805200;Note=Protein of unknown function DUF3007 domain containing protein.;Transcript_evidence=AK066239 (DDBJ%2C Best hit);ORF_evidence=A2WW44 (UniProt);InterPro=Protein of unknown function DUF3007 (IPR021562);NIAS_FLcDNA=J013058M15;Expression=AK066239;TENOR=Os01t0805200-01;KEGG=Os01t0805200-01
Chr01	irgsp1_rep	five_prime_UTR	34139586	34139709	.	-	.	Parent=Os01t0805200-01
Chr01	irgsp1_rep	CDS	34139459	34139585	.	-	0	Parent=Os01t0805200-01
Chr01	irgsp1_rep	CDS	34139250	34139365	.	-	2	Parent=Os01t0805200-01
Chr01	irgsp1_rep	CDS	34139079	34139165	.	-	0	Parent=Os01t0805200-01
Chr01	irgsp1_rep	CDS	34138785	34138943	.	-	0	Parent=Os01t0805200-01
Chr01	irgsp1_rep	CDS	34138556	34138696	.	-	0	Parent=Os01t0805200-01
Chr01	irgsp1_rep	three_prime_UTR	34138399	34138555	.	-	.	Parent=Os01t0805200-01
Chr01	irgsp1_rep	mRNA	34138431	34139616	.	-	.	ID=Os01t0805200-02;Name=Os01t0805200-02;Locus_id=Os01g0805200;Note=Protein of unknown function DUF3007 domain containing protein.;Transcript_evidence=AK104864 (DDBJ%2C Best hit);ORF_evidence=A2WW44 (UniProt);InterPro=Protein of unknown function DUF3007 (IPR021562);NIAS_FLcDNA=001-043-F03;Expression=AK104864;TENOR=Os01t0805200-02;KEGG=Os01t0805200-02
Chr01	irgsp1_rep	five_prime_UTR	34139586	34139616	.	-	.	Parent=Os01t0805200-02
Chr01	irgsp1_rep	CDS	34139459	34139585	.	-	0	Parent=Os01t0805200-02
Chr01	irgsp1_rep	CDS	34139250	34139365	.	-	2	Parent=Os01t0805200-02
Chr01	irgsp1_rep	CDS	34139079	34139165	.	-	0	Parent=Os01t0805200-02
Chr01	irgsp1_rep	CDS	34138785	34138943	.	-	0	Parent=Os01t0805200-02
Chr01	irgsp1_rep	CDS	34138556	34138696	.	-	0	Parent=Os01t0805200-02
Chr01	irgsp1_rep	three_prime_UTR	34138431	34138555	.	-	.	Parent=Os01t0805200-02
Chr01	irgsp1_rep	mRNA	34139768	34141192	.	+	.	ID=Os01t0805300-01;Name=Os01t0805300-01;Locus_id=Os01g0805300;Oryzabase Gene Symbol Synonym(s)=PsbP;Oryzabase Gene Name Synonym(s)=Oxygen-evolving complex protein PsbP;Note=Mog1/PsbP%2C alpha/beta/alpha sandwich domain containing protein.;Transcript_evidence=AK065795 (DDBJ%2C Best hit);ORF_evidence=XP_002876377.1 (RefSeq);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: oxygen evolving complex (GO:0009654),Cellular Component: extrinsic to membrane (GO:0019898),Molecular Function: calcium ion binding (GO:0005509);InterPro=Photosystem II PsbP%2C oxygen evolving complex (IPR002683),Mog1/PsbP%2C alpha/beta/alpha sandwich (IPR016123),Mog1/PsbP/DUF1795%2C alpha/beta/alpha sandwich (IPR016124);NIAS_FLcDNA=J013042G03;Oryzabase=12436;Expression=AK065795;TENOR=Os01t0805300-01;KEGG=Os01t0805300-01
Chr01	irgsp1_rep	five_prime_UTR	34139768	34139828	.	+	.	Parent=Os01t0805300-01
Chr01	irgsp1_rep	CDS	34139829	34140159	.	+	0	Parent=Os01t0805300-01
Chr01	irgsp1_rep	CDS	34140288	34140604	.	+	2	Parent=Os01t0805300-01
Chr01	irgsp1_rep	CDS	34140730	34140900	.	+	0	Parent=Os01t0805300-01
Chr01	irgsp1_rep	three_prime_UTR	34140901	34141192	.	+	.	Parent=Os01t0805300-01
Chr01	irgsp1_rep	mRNA	34139791	34141211	.	+	.	ID=Os01t0805300-02;Name=Os01t0805300-02;Locus_id=Os01g0805300;Oryzabase Gene Symbol Synonym(s)=PsbP;Oryzabase Gene Name Synonym(s)=Oxygen-evolving complex protein PsbP;Note=Mog1/PsbP%2C alpha/beta/alpha sandwich domain containing protein.;Transcript_evidence=AK061140 (DDBJ%2C Best hit),AK104269 (DDBJ%2C Best hit);ORF_evidence=XP_002876377.1 (RefSeq);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: oxygen evolving complex (GO:0009654),Cellular Component: extrinsic to membrane (GO:0019898),Molecular Function: calcium ion binding (GO:0005509);InterPro=Photosystem II PsbP%2C oxygen evolving complex (IPR002683),Mog1/PsbP%2C alpha/beta/alpha sandwich (IPR016123),Mog1/PsbP/DUF1795%2C alpha/beta/alpha sandwich (IPR016124);NIAS_FLcDNA=006-208-C01,006-311-E12;Oryzabase=12436;TENOR=Os01t0805300-02
Chr01	irgsp1_rep	five_prime_UTR	34139791	34139828	.	+	.	Parent=Os01t0805300-02
Chr01	irgsp1_rep	CDS	34139829	34140159	.	+	0	Parent=Os01t0805300-02
Chr01	irgsp1_rep	CDS	34140288	34140604	.	+	2	Parent=Os01t0805300-02
Chr01	irgsp1_rep	CDS	34140730	34140900	.	+	0	Parent=Os01t0805300-02
Chr01	irgsp1_rep	three_prime_UTR	34140901	34141211	.	+	.	Parent=Os01t0805300-02
Chr01	irgsp1_rep	mRNA	34141778	34145201	.	+	.	ID=Os01t0805400-01;Name=Os01t0805400-01;Locus_id=Os01g0805400;RAP-DB Gene Symbol Synonym(s)=Os6;Oryzabase Gene Symbol Synonym(s)=OsEnS-18%2C EnS-18%2C Os6;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 18%2C cytokinin glycosyltransferase;Note=Cytokinin glycosyltransferase;Transcript_evidence=AK105954;ORF_evidence=Q8LR92;GO=Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213),UDP-glycosyltransferase family%2C conserved site (IPR035595);NIAS_FLcDNA=001-205-D05;Manual Curation=April 8%2C 2019;Literature_PMID=30923923;Oryzabase=18358;Expression=AK105954;TENOR=Os01t0805400-01;KEGG=Os01t0805400-01
Chr01	irgsp1_rep	five_prime_UTR	34141778	34141846	.	+	.	Parent=Os01t0805400-01
Chr01	irgsp1_rep	CDS	34141847	34142342	.	+	0	Parent=Os01t0805400-01
Chr01	irgsp1_rep	CDS	34144072	34144988	.	+	2	Parent=Os01t0805400-01
Chr01	irgsp1_rep	three_prime_UTR	34144989	34145201	.	+	.	Parent=Os01t0805400-01
Chr01	irgsp1_rep	mRNA	34146163	34149144	.	+	.	ID=Os01t0805500-00;Name=Os01t0805500-00;Locus_id=Os01g0805500;CGSNL Gene Symbol=UGT87C1;CGSNL Gene Name=UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 87C1;Oryzabase Gene Symbol Synonym(s)=OsUGT87C1;Oryzabase Gene Name Synonym(s)=UDP-glucose-dependent glycosyltransferase 87C1;Note=Similar to indole-3-acetate beta-glucosyltransferase.;Transcript_evidence=CT835002 (DDBJ%2C Best hit);ORF_evidence=NP_001148167.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);Oryzabase=21819;TENOR=Os01t0805500-00;KEGG=Os01t0805500-00
Chr01	irgsp1_rep	five_prime_UTR	34146163	34146208	.	+	.	Parent=Os01t0805500-00
Chr01	irgsp1_rep	CDS	34146209	34146755	.	+	0	Parent=Os01t0805500-00
Chr01	irgsp1_rep	CDS	34148179	34148823	.	+	2	Parent=Os01t0805500-00
Chr01	irgsp1_rep	CDS	34148868	34148929	.	+	2	Parent=Os01t0805500-00
Chr01	irgsp1_rep	three_prime_UTR	34148930	34149144	.	+	.	Parent=Os01t0805500-00
Chr01	irgsp1_rep	mRNA	34149458	34151206	.	-	.	ID=Os01t0805600-01;Name=Os01t0805600-01;Locus_id=Os01g0805600;CGSNL Gene Symbol=CYCB1%3B1;CGSNL Gene Name=CYCLIN-B1-1;Oryzabase Gene Symbol Synonym(s)=CycB1%3B1%2C CycB1%3Bos%3B1%2C Orysa%3BCycB1%3B1%2C OsCycB1%3B1%2C CyclaZm%2C CYCIaZm%2C OsCYCIaZm;Oryzabase Gene Name Synonym(s)=B-type cyclin 1%3B1;Note=Similar to Cyclin-B1-1.;Transcript_evidence=AK111939 (DDBJ%2C Best hit);ORF_evidence=Q0JIF2 (UniProt);GO=Biological Process: regulation of cyclin-dependent protein kinase activity (GO:0000079),Biological Process: regulation of cell cycle (GO:0051726),Cellular Component: nucleus (GO:0005634),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin%2C C-terminal (IPR004367),Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763),Cyclin A/B/D/E (IPR014400);NIAS_FLcDNA=001-020-G01;Oryzabase=13260;TENOR=Os01t0805600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	34151182	34151206	.	-	.	Parent=Os01t0805600-01
Chr01	irgsp1_rep	CDS	34151083	34151181	.	-	0	Parent=Os01t0805600-01
Chr01	irgsp1_rep	CDS	34150850	34150975	.	-	0	Parent=Os01t0805600-01
Chr01	irgsp1_rep	CDS	34150499	34150747	.	-	0	Parent=Os01t0805600-01
Chr01	irgsp1_rep	CDS	34150238	34150411	.	-	0	Parent=Os01t0805600-01
Chr01	irgsp1_rep	CDS	34149954	34150132	.	-	0	Parent=Os01t0805600-01
Chr01	irgsp1_rep	CDS	34149721	34149856	.	-	1	Parent=Os01t0805600-01
Chr01	irgsp1_rep	three_prime_UTR	34149458	34149720	.	-	.	Parent=Os01t0805600-01
Chr01	irgsp1_rep	mRNA	34153520	34160139	.	-	.	ID=Os01t0805700-01;Name=Os01t0805700-01;Locus_id=Os01g0805700;Note=Similar to plectin-related.;Transcript_evidence=AK069400 (DDBJ%2C Best hit);ORF_evidence=NP_850085.1 (RefSeq);NIAS_FLcDNA=J023011I15;Expression=AK069400;TENOR=Os01t0805700-01;KEGG=Os01t0805700-01
Chr01	irgsp1_rep	five_prime_UTR	34159597	34160139	.	-	.	Parent=Os01t0805700-01
Chr01	irgsp1_rep	five_prime_UTR	34159057	34159076	.	-	.	Parent=Os01t0805700-01
Chr01	irgsp1_rep	CDS	34158775	34159056	.	-	0	Parent=Os01t0805700-01
Chr01	irgsp1_rep	CDS	34158080	34158208	.	-	0	Parent=Os01t0805700-01
Chr01	irgsp1_rep	CDS	34157523	34157615	.	-	0	Parent=Os01t0805700-01
Chr01	irgsp1_rep	CDS	34157127	34157267	.	-	0	Parent=Os01t0805700-01
Chr01	irgsp1_rep	CDS	34156875	34156943	.	-	0	Parent=Os01t0805700-01
Chr01	irgsp1_rep	CDS	34156457	34156540	.	-	0	Parent=Os01t0805700-01
Chr01	irgsp1_rep	CDS	34156190	34156367	.	-	0	Parent=Os01t0805700-01
Chr01	irgsp1_rep	CDS	34155884	34156000	.	-	2	Parent=Os01t0805700-01
Chr01	irgsp1_rep	CDS	34155133	34155191	.	-	2	Parent=Os01t0805700-01
Chr01	irgsp1_rep	CDS	34154725	34154859	.	-	0	Parent=Os01t0805700-01
Chr01	irgsp1_rep	CDS	34153932	34154081	.	-	0	Parent=Os01t0805700-01
Chr01	irgsp1_rep	CDS	34153767	34153811	.	-	0	Parent=Os01t0805700-01
Chr01	irgsp1_rep	three_prime_UTR	34153520	34153766	.	-	.	Parent=Os01t0805700-01
Chr01	irgsp1_rep	mRNA	34153483	34159963	.	-	.	ID=Os01t0805700-02;Name=Os01t0805700-02;Locus_id=Os01g0805700;Note=Similar to plectin-related.;Transcript_evidence=AK101937 (DDBJ%2C Best hit);ORF_evidence=NP_850085.1 (RefSeq);NIAS_FLcDNA=J033074F22;Expression=AK101937;TENOR=Os01t0805700-02;KEGG=Os01t0805700-02
Chr01	irgsp1_rep	five_prime_UTR	34159597	34159963	.	-	.	Parent=Os01t0805700-02
Chr01	irgsp1_rep	five_prime_UTR	34159057	34159072	.	-	.	Parent=Os01t0805700-02
Chr01	irgsp1_rep	CDS	34158775	34159056	.	-	0	Parent=Os01t0805700-02
Chr01	irgsp1_rep	CDS	34158080	34158208	.	-	0	Parent=Os01t0805700-02
Chr01	irgsp1_rep	CDS	34157523	34157615	.	-	0	Parent=Os01t0805700-02
Chr01	irgsp1_rep	CDS	34157127	34157267	.	-	0	Parent=Os01t0805700-02
Chr01	irgsp1_rep	CDS	34156875	34156943	.	-	0	Parent=Os01t0805700-02
Chr01	irgsp1_rep	CDS	34156457	34156540	.	-	0	Parent=Os01t0805700-02
Chr01	irgsp1_rep	CDS	34156190	34156367	.	-	0	Parent=Os01t0805700-02
Chr01	irgsp1_rep	CDS	34155884	34156000	.	-	2	Parent=Os01t0805700-02
Chr01	irgsp1_rep	CDS	34155133	34155191	.	-	2	Parent=Os01t0805700-02
Chr01	irgsp1_rep	CDS	34154725	34154859	.	-	0	Parent=Os01t0805700-02
Chr01	irgsp1_rep	CDS	34153932	34154081	.	-	0	Parent=Os01t0805700-02
Chr01	irgsp1_rep	CDS	34153767	34153811	.	-	0	Parent=Os01t0805700-02
Chr01	irgsp1_rep	three_prime_UTR	34153483	34153766	.	-	.	Parent=Os01t0805700-02
Chr01	irgsp1_rep	mRNA	34156004	34156096	.	-	.	ID=Os01t0805750-00;Name=Os01t0805750-00;Locus_id=Os01g0805750;Note=Non-protein coding transcript.;Transcript_evidence=EU951443 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0805750-00
Chr01	irgsp1_rep	exon	34156004	34156096	.	-	.	Parent=Os01t0805750-00
Chr01	irgsp1_rep	mRNA	34163747	34166383	.	-	.	ID=Os01t0805800-01;Name=Os01t0805800-01;Locus_id=Os01g0805800;Note=DNA-directed RNA polymerase%2C RPB5 subunit domain containing protein.;Transcript_evidence=AK103408 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899);InterPro=RNA polymerase%2C subunit H/Rpb5 C-terminal (IPR000783),RNA polymerase%2C Rpb5%2C N-terminal (IPR005571),DNA-directed RNA polymerase%2C RPB5 subunit (IPR014381),RNA polymerase%2C subunit H/Rpb5%2C conserved site (IPR020608);NIAS_FLcDNA=J033128E13;Expression=AK103408;TENOR=Os01t0805800-01;KEGG=Os01t0805800-01
Chr01	irgsp1_rep	five_prime_UTR	34166267	34166383	.	-	.	Parent=Os01t0805800-01
Chr01	irgsp1_rep	CDS	34166054	34166266	.	-	0	Parent=Os01t0805800-01
Chr01	irgsp1_rep	CDS	34165132	34165311	.	-	0	Parent=Os01t0805800-01
Chr01	irgsp1_rep	CDS	34164888	34165001	.	-	0	Parent=Os01t0805800-01
Chr01	irgsp1_rep	CDS	34163981	34164106	.	-	0	Parent=Os01t0805800-01
Chr01	irgsp1_rep	three_prime_UTR	34163747	34163980	.	-	.	Parent=Os01t0805800-01
Chr01	irgsp1_rep	mRNA	34163740	34166342	.	-	.	ID=Os01t0805800-02;Name=Os01t0805800-02;Locus_id=Os01g0805800;Note=DNA-directed RNA polymerase%2C RPB5 subunit domain containing protein.;Transcript_evidence=AK059963 (DDBJ%2C Best hit);ORF_evidence=NP_001152590.1 (RefSeq);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899);InterPro=RNA polymerase%2C subunit H/Rpb5 C-terminal (IPR000783),RNA polymerase%2C Rpb5%2C N-terminal (IPR005571),DNA-directed RNA polymerase%2C RPB5 subunit (IPR014381),RNA polymerase%2C subunit H/Rpb5%2C conserved site (IPR020608);NIAS_FLcDNA=006-211-F07;TENOR=Os01t0805800-02
Chr01	irgsp1_rep	five_prime_UTR	34166267	34166342	.	-	.	Parent=Os01t0805800-02
Chr01	irgsp1_rep	CDS	34166054	34166266	.	-	0	Parent=Os01t0805800-02
Chr01	irgsp1_rep	CDS	34165132	34165311	.	-	0	Parent=Os01t0805800-02
Chr01	irgsp1_rep	CDS	34164888	34165001	.	-	0	Parent=Os01t0805800-02
Chr01	irgsp1_rep	CDS	34163981	34164106	.	-	0	Parent=Os01t0805800-02
Chr01	irgsp1_rep	three_prime_UTR	34163740	34163980	.	-	.	Parent=Os01t0805800-02
Chr01	irgsp1_rep	mRNA	34167936	34171573	.	+	.	ID=Os01t0805900-01;Name=Os01t0805900-01;Locus_id=Os01g0805900;CGSNL Gene Symbol=TUB4;CGSNL Gene Name=BETA-TUBULIN 4;Oryzabase Gene Symbol Synonym(s)=OsTUB4%2C TUBB4%2C OSTB-16%2C R1623%2C RTUB-1%2C Ostub16;Oryzabase Gene Name Synonym(s)=beta tubulin 4%2C Tubulin beta-4 chain%2C Beta-4-tubulin%2C beta tubulin 1%2C beta-tubulin isotype 16;Note=Tubulin beta-2 chain (Beta-2 tubulin).;Transcript_evidence=AK072502 (DDBJ%2C Best hit);ORF_evidence=NP_001105317.1 (RefSeq);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: microtubule-based process (GO:0007017),Biological Process: microtubule-based movement (GO:0007018),Biological Process: protein polymerization (GO:0051258),Cellular Component: microtubule (GO:0005874),Cellular Component: protein complex (GO:0043234),Molecular Function: GTPase activity (GO:0003924),Molecular Function: structural molecule activity (GO:0005198),Molecular Function: GTP binding (GO:0005525);InterPro=Tubulin (IPR000217),Beta tubulin (IPR002453),Tubulin/FtsZ%2C GTPase domain (IPR003008),Tubulin/FtsZ%2C C-terminal (IPR008280),Beta tubulin%2C autoregulation binding site (IPR013838),Tubulin%2C conserved site (IPR017975),Tubulin/FtsZ%2C 2-layer sandwich domain (IPR018316),Tubulin%2C C-terminal (IPR023123);NIAS_FLcDNA=J023126C19;Oryzabase=2959;Expression=AK072502;TENOR=Os01t0805900-01;KEGG=Os01t0805900-01
Chr01	irgsp1_rep	five_prime_UTR	34167936	34168012	.	+	.	Parent=Os01t0805900-01
Chr01	irgsp1_rep	five_prime_UTR	34168896	34168902	.	+	.	Parent=Os01t0805900-01
Chr01	irgsp1_rep	CDS	34168903	34169296	.	+	0	Parent=Os01t0805900-01
Chr01	irgsp1_rep	CDS	34170004	34170273	.	+	2	Parent=Os01t0805900-01
Chr01	irgsp1_rep	CDS	34170686	34171365	.	+	2	Parent=Os01t0805900-01
Chr01	irgsp1_rep	three_prime_UTR	34171366	34171573	.	+	.	Parent=Os01t0805900-01
Chr01	irgsp1_rep	mRNA	34174550	34178666	.	+	.	ID=Os01t0805975-01;Name=Os01t0805975-01;Locus_id=Os01g0805975;Note=Hypothetical gene.;Transcript_evidence=AK288272 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090017B03;TENOR=Os01t0805975-01;KEGG=Os01t0805975-01
Chr01	irgsp1_rep	five_prime_UTR	34174550	34177879	.	+	.	Parent=Os01t0805975-01
Chr01	irgsp1_rep	CDS	34177880	34178104	.	+	0	Parent=Os01t0805975-01
Chr01	irgsp1_rep	three_prime_UTR	34178105	34178666	.	+	.	Parent=Os01t0805975-01
Chr01	irgsp1_rep	mRNA	34176203	34179518	.	-	.	ID=Os01t0806000-00;Name=Os01t0806000-00;Locus_id=Os01g0806000;Note=Similar to UBA-like.;Transcript_evidence=FP093123 (DDBJ);ORF_evidence=Q2HSZ5 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S54%2C rhomboid domain (IPR022764);TENOR=Os01t0806000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	34179518	34179518	.	-	.	Parent=Os01t0806000-00
Chr01	irgsp1_rep	CDS	34179416	34179517	.	-	0	Parent=Os01t0806000-00
Chr01	irgsp1_rep	CDS	34178981	34179121	.	-	0	Parent=Os01t0806000-00
Chr01	irgsp1_rep	CDS	34178829	34178895	.	-	0	Parent=Os01t0806000-00
Chr01	irgsp1_rep	CDS	34177771	34177922	.	-	2	Parent=Os01t0806000-00
Chr01	irgsp1_rep	CDS	34177579	34177680	.	-	0	Parent=Os01t0806000-00
Chr01	irgsp1_rep	CDS	34177070	34177231	.	-	0	Parent=Os01t0806000-00
Chr01	irgsp1_rep	CDS	34176267	34176344	.	-	0	Parent=Os01t0806000-00
Chr01	irgsp1_rep	three_prime_UTR	34176203	34176266	.	-	.	Parent=Os01t0806000-00
Chr01	irgsp1_rep	mRNA	34182291	34182614	.	-	.	ID=Os01t0806101-00;Name=Os01t0806101-00;Locus_id=Os01g0806101;Note=Non-protein coding transcript.;Transcript_evidence=CT835019 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os01t0806101-00
Chr01	irgsp1_rep	exon	34182291	34182614	.	-	.	Parent=Os01t0806101-00
Chr01	irgsp1_rep	mRNA	34183076	34186865	.	-	.	ID=Os01t0806200-01;Name=Os01t0806200-01;Locus_id=Os01g0806200;Oryzabase Gene Symbol Synonym(s)=OsFbox045%2C OsFbox45%2C Os_F0307;Oryzabase Gene Name Synonym(s)=F-box protein 45;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK105235 (DDBJ%2C Best hit);ORF_evidence=NP_001147974.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=001-112-H09;Oryzabase=16844;Expression=AK105235;TENOR=Os01t0806200-01;KEGG=Os01t0806200-01
Chr01	irgsp1_rep	five_prime_UTR	34186065	34186865	.	-	.	Parent=Os01t0806200-01
Chr01	irgsp1_rep	CDS	34185303	34186064	.	-	0	Parent=Os01t0806200-01
Chr01	irgsp1_rep	CDS	34184966	34185045	.	-	0	Parent=Os01t0806200-01
Chr01	irgsp1_rep	CDS	34184456	34184634	.	-	1	Parent=Os01t0806200-01
Chr01	irgsp1_rep	CDS	34184154	34184228	.	-	2	Parent=Os01t0806200-01
Chr01	irgsp1_rep	CDS	34183443	34183630	.	-	2	Parent=Os01t0806200-01
Chr01	irgsp1_rep	three_prime_UTR	34183076	34183442	.	-	.	Parent=Os01t0806200-01
Chr01	irgsp1_rep	mRNA	34192980	34194025	.	+	.	ID=Os01t0806300-01;Name=Os01t0806300-01;Locus_id=Os01g0806300;Note=Conserved hypothetical protein.;Transcript_evidence=AK111352 (DDBJ%2C Best hit);ORF_evidence=A2WW51 (UniProt);NIAS_FLcDNA=002-181-G08;Expression=AK111352;TENOR=Os01t0806300-01;KEGG=Os01t0806300-01
Chr01	irgsp1_rep	five_prime_UTR	34192980	34193220	.	+	.	Parent=Os01t0806300-01
Chr01	irgsp1_rep	CDS	34193221	34193550	.	+	0	Parent=Os01t0806300-01
Chr01	irgsp1_rep	three_prime_UTR	34193551	34193556	.	+	.	Parent=Os01t0806300-01
Chr01	irgsp1_rep	three_prime_UTR	34193792	34194025	.	+	.	Parent=Os01t0806300-01
Chr01	irgsp1_rep	mRNA	34201519	34202550	.	+	.	ID=Os01t0806400-01;Name=Os01t0806400-01;Locus_id=Os01g0806400;Oryzabase Gene Symbol Synonym(s)=OsEnS-19;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 19;Note=Protein of unknown function DUF617%2C plant domain containing protein.;Transcript_evidence=AK288057 (DDBJ%2C Best hit);ORF_evidence=Q5VR64 (UniProt);InterPro=Protein of unknown function DUF617%2C plant (IPR006460);NIAS_FLcDNA=J075153G17;Oryzabase=18359;TENOR=Os01t0806400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	34201519	34201519	.	+	.	Parent=Os01t0806400-01
Chr01	irgsp1_rep	CDS	34201520	34202413	.	+	0	Parent=Os01t0806400-01
Chr01	irgsp1_rep	three_prime_UTR	34202414	34202550	.	+	.	Parent=Os01t0806400-01
Chr01	irgsp1_rep	mRNA	34217036	34218756	.	+	.	ID=Os01t0806600-01;Name=Os01t0806600-01;Locus_id=Os01g0806600;Note=Conserved hypothetical protein.;Transcript_evidence=AK288576 (DDBJ%2C Best hit);ORF_evidence=NP_001059097.1 (RefSeq);NIAS_FLcDNA=J090049B14;TENOR=Os01t0806600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	34217036	34217393	.	+	.	Parent=Os01t0806600-01
Chr01	irgsp1_rep	CDS	34217394	34217720	.	+	0	Parent=Os01t0806600-01
Chr01	irgsp1_rep	three_prime_UTR	34217721	34218756	.	+	.	Parent=Os01t0806600-01
Chr01	irgsp1_rep	mRNA	34228825	34229640	.	+	.	ID=Os01t0806801-00;Name=Os01t0806801-00;Locus_id=Os01g0806801;Note=Conserved hypothetical protein.;Transcript_evidence=CT834814 (DDBJ%2C Best hit);ORF_evidence=Q5WMS3 (UniProt);TENOR=Os01t0806801-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	34228825	34229426	.	+	.	Parent=Os01t0806801-00
Chr01	irgsp1_rep	CDS	34229427	34229546	.	+	0	Parent=Os01t0806801-00
Chr01	irgsp1_rep	three_prime_UTR	34229547	34229640	.	+	.	Parent=Os01t0806801-00
Chr01	irgsp1_rep	mRNA	34246252	34249623	.	-	.	ID=Os01t0807000-01;Name=Os01t0807000-01;Locus_id=Os01g0807000;Note=Conserved hypothetical protein.;Transcript_evidence=AK109751 (DDBJ%2C Best hit);ORF_evidence=Q53NH3 (UniProt);NIAS_FLcDNA=002-146-F08;TENOR=Os01t0807000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	34249572	34249623	.	-	.	Parent=Os01t0807000-01
Chr01	irgsp1_rep	CDS	34248723	34249571	.	-	0	Parent=Os01t0807000-01
Chr01	irgsp1_rep	three_prime_UTR	34248428	34248722	.	-	.	Parent=Os01t0807000-01
Chr01	irgsp1_rep	three_prime_UTR	34246252	34246895	.	-	.	Parent=Os01t0807000-01
Chr01	irgsp1_rep	mRNA	34259141	34259790	.	+	.	ID=Os01t0807266-00;Name=Os01t0807266-00;Locus_id=Os01g0807266;Note=Hypothetical gene.;Transcript_evidence=CT834968 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os01t0807266-00;KEGG=Os01t0807266-00
Chr01	irgsp1_rep	five_prime_UTR	34259141	34259197	.	+	.	Parent=Os01t0807266-00
Chr01	irgsp1_rep	five_prime_UTR	34259229	34259445	.	+	.	Parent=Os01t0807266-00
Chr01	irgsp1_rep	CDS	34259446	34259724	.	+	0	Parent=Os01t0807266-00
Chr01	irgsp1_rep	three_prime_UTR	34259725	34259790	.	+	.	Parent=Os01t0807266-00
Chr01	irgsp1_rep	mRNA	34260691	34261452	.	+	.	ID=Os01t0807532-00;Name=Os01t0807532-00;Locus_id=Os01g0807532;Note=Hypothetical conserved gene.;Transcript_evidence=CT834858 (DDBJ%2C Best hit);ORF_evidence=A2WW55 (UniProt);TENOR=Os01t0807532-00;KEGG=Os01t0807532-00
Chr01	irgsp1_rep	five_prime_UTR	34260691	34260983	.	+	.	Parent=Os01t0807532-00
Chr01	irgsp1_rep	CDS	34260984	34261112	.	+	0	Parent=Os01t0807532-00
Chr01	irgsp1_rep	three_prime_UTR	34261113	34261452	.	+	.	Parent=Os01t0807532-00
Chr01	irgsp1_rep	mRNA	34293077	34295574	.	-	.	ID=Os01t0807800-01;Name=Os01t0807800-01;Locus_id=Os01g0807800;Note=Conserved hypothetical protein.;Transcript_evidence=AK065492 (DDBJ%2C Best hit);ORF_evidence=NP_001066337.1 (RefSeq);NIAS_FLcDNA=J013021J15;TENOR=Os01t0807800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	34295448	34295574	.	-	0	Parent=Os01t0807800-01
Chr01	irgsp1_rep	CDS	34295275	34295377	.	-	2	Parent=Os01t0807800-01
Chr01	irgsp1_rep	CDS	34294761	34294835	.	-	1	Parent=Os01t0807800-01
Chr01	irgsp1_rep	CDS	34294142	34294145	.	-	1	Parent=Os01t0807800-01
Chr01	irgsp1_rep	three_prime_UTR	34293077	34294141	.	-	.	Parent=Os01t0807800-01
Chr01	irgsp1_rep	mRNA	34295651	34305961	.	+	.	ID=Os01t0807900-01;Name=Os01t0807900-01;Locus_id=Os01g0807900;Note=Similar to Dihydropyrimidinase (Dihydropyrimidine amidohydrolase) (EC 3.5.2.2).;Transcript_evidence=AK072454 (DDBJ%2C Best hit);ORF_evidence=NP_568258.2 (RefSeq);GO=Biological Process: pyrimidine base catabolic process (GO:0006208),Cellular Component: cytoplasm (GO:0005737),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds (GO:0016810),Molecular Function: hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds%2C in cyclic amides (GO:0016812);InterPro=Amidohydrolase 1 (IPR006680),Metal-dependent hydrolase%2C composite domain (IPR011059),Hydantoinase/dihydropyrimidinase (IPR011778);NIAS_FLcDNA=J023114O11;Expression=AK072454;TENOR=Os01t0807900-01;KEGG=Os01t0807900-01 (EC:3.5.2.2)
Chr01	irgsp1_rep	five_prime_UTR	34295651	34295880	.	+	.	Parent=Os01t0807900-01
Chr01	irgsp1_rep	five_prime_UTR	34301177	34301304	.	+	.	Parent=Os01t0807900-01
Chr01	irgsp1_rep	five_prime_UTR	34301408	34301445	.	+	.	Parent=Os01t0807900-01
Chr01	irgsp1_rep	five_prime_UTR	34301526	34301967	.	+	.	Parent=Os01t0807900-01
Chr01	irgsp1_rep	CDS	34301968	34302057	.	+	0	Parent=Os01t0807900-01
Chr01	irgsp1_rep	CDS	34302151	34302324	.	+	0	Parent=Os01t0807900-01
Chr01	irgsp1_rep	CDS	34303009	34303063	.	+	0	Parent=Os01t0807900-01
Chr01	irgsp1_rep	CDS	34303151	34303420	.	+	2	Parent=Os01t0807900-01
Chr01	irgsp1_rep	CDS	34303622	34303833	.	+	2	Parent=Os01t0807900-01
Chr01	irgsp1_rep	CDS	34304017	34304137	.	+	0	Parent=Os01t0807900-01
Chr01	irgsp1_rep	CDS	34304415	34304502	.	+	2	Parent=Os01t0807900-01
Chr01	irgsp1_rep	CDS	34304575	34304653	.	+	1	Parent=Os01t0807900-01
Chr01	irgsp1_rep	CDS	34304833	34304920	.	+	0	Parent=Os01t0807900-01
Chr01	irgsp1_rep	CDS	34305053	34305093	.	+	2	Parent=Os01t0807900-01
Chr01	irgsp1_rep	CDS	34305218	34305270	.	+	0	Parent=Os01t0807900-01
Chr01	irgsp1_rep	CDS	34305364	34305520	.	+	1	Parent=Os01t0807900-01
Chr01	irgsp1_rep	CDS	34305603	34305794	.	+	0	Parent=Os01t0807900-01
Chr01	irgsp1_rep	three_prime_UTR	34305795	34305961	.	+	.	Parent=Os01t0807900-01
Chr01	irgsp1_rep	mRNA	34301581	34305910	.	+	.	ID=Os01t0807900-02;Name=Os01t0807900-02;Locus_id=Os01g0807900;Note=D-hydantoinase domain containing protein.;Transcript_evidence=AK099861 (DDBJ%2C Best hit);ORF_evidence=NP_568258.2 (RefSeq);GO=Biological Process: pyrimidine base catabolic process (GO:0006208),Cellular Component: cytoplasm (GO:0005737),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds (GO:0016810),Molecular Function: hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds%2C in cyclic amides (GO:0016812);InterPro=Amidohydrolase 1 (IPR006680),Metal-dependent hydrolase%2C composite domain (IPR011059),Hydantoinase/dihydropyrimidinase (IPR011778);NIAS_FLcDNA=J013110N21;Expression=AK099861;TENOR=Os01t0807900-02;KEGG=Os01t0807900-02 (EC:3.5.2.2)
Chr01	irgsp1_rep	five_prime_UTR	34301581	34301967	.	+	.	Parent=Os01t0807900-02
Chr01	irgsp1_rep	CDS	34301968	34302057	.	+	0	Parent=Os01t0807900-02
Chr01	irgsp1_rep	CDS	34302151	34302324	.	+	0	Parent=Os01t0807900-02
Chr01	irgsp1_rep	CDS	34303009	34303063	.	+	0	Parent=Os01t0807900-02
Chr01	irgsp1_rep	CDS	34303235	34303420	.	+	2	Parent=Os01t0807900-02
Chr01	irgsp1_rep	CDS	34303622	34303833	.	+	2	Parent=Os01t0807900-02
Chr01	irgsp1_rep	CDS	34304017	34304137	.	+	0	Parent=Os01t0807900-02
Chr01	irgsp1_rep	CDS	34304415	34304502	.	+	2	Parent=Os01t0807900-02
Chr01	irgsp1_rep	CDS	34304575	34304653	.	+	1	Parent=Os01t0807900-02
Chr01	irgsp1_rep	CDS	34304833	34304920	.	+	0	Parent=Os01t0807900-02
Chr01	irgsp1_rep	CDS	34305053	34305093	.	+	2	Parent=Os01t0807900-02
Chr01	irgsp1_rep	CDS	34305218	34305270	.	+	0	Parent=Os01t0807900-02
Chr01	irgsp1_rep	CDS	34305364	34305520	.	+	1	Parent=Os01t0807900-02
Chr01	irgsp1_rep	CDS	34305603	34305794	.	+	0	Parent=Os01t0807900-02
Chr01	irgsp1_rep	three_prime_UTR	34305795	34305910	.	+	.	Parent=Os01t0807900-02
Chr01	irgsp1_rep	mRNA	34306542	34313315	.	-	.	ID=Os01t0808100-01;Name=Os01t0808100-01;Locus_id=Os01g0808100;CGSNL Gene Symbol=BZIP8;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 8;Oryzabase Gene Symbol Synonym(s)=OsbZIP08%2C OsbZIP8%2C OsTGA2%2C TGA2%2C OsTGA2/OsbZIP28;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 08%2C TGA transcription factor 2;Note=Similar to BZIP transcription factor.;Transcript_evidence=AK069158 (DDBJ%2C Best hit);ORF_evidence=Q6IVC2-2;GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);NIAS_FLcDNA=J023008B01;Manual Curation=December 27%2C 2018;Oryzabase=10098;TENOR=Os01t0808100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	34312869	34313315	.	-	.	Parent=Os01t0808100-01
Chr01	irgsp1_rep	CDS	34312765	34312868	.	-	0	Parent=Os01t0808100-01
Chr01	irgsp1_rep	CDS	34311733	34311836	.	-	1	Parent=Os01t0808100-01
Chr01	irgsp1_rep	CDS	34311435	34311508	.	-	2	Parent=Os01t0808100-01
Chr01	irgsp1_rep	CDS	34311123	34311326	.	-	0	Parent=Os01t0808100-01
Chr01	irgsp1_rep	CDS	34310542	34310616	.	-	0	Parent=Os01t0808100-01
Chr01	irgsp1_rep	CDS	34310400	34310459	.	-	0	Parent=Os01t0808100-01
Chr01	irgsp1_rep	CDS	34310013	34310090	.	-	0	Parent=Os01t0808100-01
Chr01	irgsp1_rep	CDS	34309872	34309923	.	-	0	Parent=Os01t0808100-01
Chr01	irgsp1_rep	CDS	34309178	34309521	.	-	2	Parent=Os01t0808100-01
Chr01	irgsp1_rep	three_prime_UTR	34308275	34309177	.	-	.	Parent=Os01t0808100-01
Chr01	irgsp1_rep	three_prime_UTR	34307524	34307772	.	-	.	Parent=Os01t0808100-01
Chr01	irgsp1_rep	three_prime_UTR	34306542	34306976	.	-	.	Parent=Os01t0808100-01
Chr01	irgsp1_rep	mRNA	34306514	34313319	.	-	.	ID=Os01t0808100-02;Name=Os01t0808100-02;Locus_id=Os01g0808100;RAP-DB Gene Symbol Synonym(s)=OsTGA2;CGSNL Gene Symbol=BZIP8;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 8;Oryzabase Gene Symbol Synonym(s)=OsbZIP08%2C OsbZIP8%2C OsTGA2%2C TGA2%2C OsTGA2/OsbZIP28;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 08%2C TGA transcription factor 2;Note=TGA transcription factor%2C bZIP transcription factor%2C Resistance against bacterial blight disease;Transcript_evidence=AY620415;ORF_evidence=Q6IVC2;GO=Biological Process: transcription%2C DNA-templated (GO:0006351),Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA-binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Basic-leucine zipper domain (IPR004827),Transcription factor TGA like domain (IPR025422);Manual Curation=December 27%2C 2018;Literature_PMID=30444888;Oryzabase=10098;Subcellular location=nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	34312869	34313319	.	-	.	Parent=Os01t0808100-02
Chr01	irgsp1_rep	CDS	34312765	34312868	.	-	0	Parent=Os01t0808100-02
Chr01	irgsp1_rep	CDS	34311733	34311836	.	-	1	Parent=Os01t0808100-02
Chr01	irgsp1_rep	CDS	34311435	34311508	.	-	2	Parent=Os01t0808100-02
Chr01	irgsp1_rep	CDS	34311123	34311326	.	-	0	Parent=Os01t0808100-02
Chr01	irgsp1_rep	CDS	34310542	34310616	.	-	0	Parent=Os01t0808100-02
Chr01	irgsp1_rep	CDS	34310400	34310459	.	-	0	Parent=Os01t0808100-02
Chr01	irgsp1_rep	CDS	34310013	34310090	.	-	0	Parent=Os01t0808100-02
Chr01	irgsp1_rep	CDS	34309872	34309923	.	-	0	Parent=Os01t0808100-02
Chr01	irgsp1_rep	CDS	34309250	34309521	.	-	2	Parent=Os01t0808100-02
Chr01	irgsp1_rep	CDS	34307524	34307772	.	-	0	Parent=Os01t0808100-02
Chr01	irgsp1_rep	CDS	34306830	34306976	.	-	0	Parent=Os01t0808100-02
Chr01	irgsp1_rep	three_prime_UTR	34306514	34306829	.	-	.	Parent=Os01t0808100-02
Chr01	irgsp1_rep	mRNA	34325310	34327888	.	+	.	ID=Os01t0808400-01;Name=Os01t0808400-01;Locus_id=Os01g0808400;CGSNL Gene Symbol=CDPK2;CGSNL Gene Name=CALCIUM-DEPENDENT PROTEIN KINASE 2;Oryzabase Gene Symbol Synonym(s)=OsCDPK2%2C OsCPK2;Oryzabase Gene Name Synonym(s)=calcium-dependent protein kinase;Note=Similar to Calcium-dependent protein kinase (Fragment).;Transcript_evidence=AK112112 (DDBJ%2C Best hit);ORF_evidence=B2KTB3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Calcium-binding EF-hand (IPR002048),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),EF-hand-like domain (IPR011992),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=002-120-D02;Oryzabase=8056;Expression=AK112112;TENOR=Os01t0808400-01;KEGG=Os01t0808400-01 (EC:2.7.11.17)
Chr01	irgsp1_rep	five_prime_UTR	34325310	34325425	.	+	.	Parent=Os01t0808400-01
Chr01	irgsp1_rep	CDS	34325426	34326069	.	+	0	Parent=Os01t0808400-01
Chr01	irgsp1_rep	CDS	34326163	34326307	.	+	1	Parent=Os01t0808400-01
Chr01	irgsp1_rep	CDS	34326402	34326555	.	+	0	Parent=Os01t0808400-01
Chr01	irgsp1_rep	CDS	34326647	34326762	.	+	2	Parent=Os01t0808400-01
Chr01	irgsp1_rep	CDS	34326876	34327043	.	+	0	Parent=Os01t0808400-01
Chr01	irgsp1_rep	CDS	34327165	34327292	.	+	0	Parent=Os01t0808400-01
Chr01	irgsp1_rep	CDS	34327386	34327485	.	+	1	Parent=Os01t0808400-01
Chr01	irgsp1_rep	CDS	34327607	34327699	.	+	0	Parent=Os01t0808400-01
Chr01	irgsp1_rep	three_prime_UTR	34327700	34327888	.	+	.	Parent=Os01t0808400-01
Chr01	irgsp1_rep	mRNA	34356640	34357450	.	+	.	ID=Os01t0808900-01;Name=Os01t0808900-01;Locus_id=Os01g0808900;RAP-DB Gene Symbol Synonym(s)=OsVQ4%2C qTGW1.2b;RAP-DB Gene Name Synonym(s)=VQ motif-containing protein 4;Oryzabase Gene Symbol Synonym(s)=OsVQ4;Oryzabase Gene Name Synonym(s)=VQ motif-containing protein 4;Note=VQ motif-containing protein%2C Control of grain weight and grain length;Transcript_evidence=Inferred from literature;ORF_evidence=Q8S202;InterPro=VQ (IPR008889);Manual Curation=October 20%2C 2020;Literature_PMID=33068118;Oryzabase=13620;TENOR=Os01t0808900-00
Chr01	irgsp1_rep	five_prime_UTR	34356640	34356895	.	+	.	Parent=Os01t0808900-01
Chr01	irgsp1_rep	CDS	34356896	34357450	.	+	0	Parent=Os01t0808900-01
Chr01	irgsp1_rep	mRNA	34357031	34357324	.	-	.	ID=Os01t0808950-00;Name=Os01t0808950-00;Locus_id=Os01g0808950;Note=Hypothetical protein.;Transcript_evidence=tplb0011f16 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0808950-00
Chr01	irgsp1_rep	five_prime_UTR	34357292	34357324	.	-	.	Parent=Os01t0808950-00
Chr01	irgsp1_rep	CDS	34357031	34357291	.	-	0	Parent=Os01t0808950-00
Chr01	irgsp1_rep	mRNA	34364097	34367570	.	+	.	ID=Os01t0809000-01;Name=Os01t0809000-01;Locus_id=Os01g0809000;Note=Hypothetical protein.;Transcript_evidence=AK119363 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-131-G10;TENOR=Os01t0809000-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	34364097	34366662	.	+	.	Parent=Os01t0809000-01
Chr01	irgsp1_rep	CDS	34366663	34367193	.	+	0	Parent=Os01t0809000-01
Chr01	irgsp1_rep	three_prime_UTR	34367194	34367570	.	+	.	Parent=Os01t0809000-01
Chr01	irgsp1_rep	mRNA	34379096	34383084	.	+	.	ID=Os01t0809300-01;Name=Os01t0809300-01;Locus_id=Os01g0809300;RAP-DB Gene Symbol Synonym(s)=LRR1%2C OsLRR1;RAP-DB Gene Name Synonym(s)=LEUCINE-RICH REPEAT PROTEIN 1%2C leucine-rich repeat protein 1;Oryzabase Gene Symbol Synonym(s)=OsLRP%2C OsLRR1%2C LRR1;Oryzabase Gene Name Synonym(s)=leucine-rich repeat protein%2C extracellular leucine-rich repeat (eLRR) domain protein 1%2C LEUCINE-RICH REPEAT PROTEIN 1;Note=Extracellular leucine-rich repeat (eLRR) domain protein%2C XB21 interacting protein%2C XA21-mediated immune response%2C Regulation of plant responses against pathogen;Transcript_evidence=AK070798,AK099315;ORF_evidence=Q5VQP7;GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat domain superfamily (IPR032675),Leucine-rich repeat-containing N-terminal%2C plant-type (IPR013210),Leucine-rich repeat (IPR001611);NIAS_FLcDNA=J023064D14,J023145K04;Manual Curation=January 21%2C 2019;Literature_PMID=28534133,19712067;Oryzabase=11527;TENOR=Os01t0809300-01;Subcellular location=early endosome (GO:0005769), late endosome (GO:0005770), plasma membrane (GO:0005886)
Chr01	irgsp1_rep	five_prime_UTR	34379096	34379226	.	+	.	Parent=Os01t0809300-01
Chr01	irgsp1_rep	CDS	34379227	34379438	.	+	0	Parent=Os01t0809300-01
Chr01	irgsp1_rep	CDS	34380217	34380288	.	+	1	Parent=Os01t0809300-01
Chr01	irgsp1_rep	CDS	34380657	34380800	.	+	1	Parent=Os01t0809300-01
Chr01	irgsp1_rep	CDS	34381218	34381289	.	+	1	Parent=Os01t0809300-01
Chr01	irgsp1_rep	CDS	34381369	34381440	.	+	1	Parent=Os01t0809300-01
Chr01	irgsp1_rep	CDS	34382695	34382764	.	+	1	Parent=Os01t0809300-01
Chr01	irgsp1_rep	three_prime_UTR	34382765	34383084	.	+	.	Parent=Os01t0809300-01
Chr01	irgsp1_rep	mRNA	34386303	34390150	.	-	.	ID=Os01t0809450-01;Name=Os01t0809450-01;Locus_id=Os01g0809450;Note=Hypothetical gene.;Transcript_evidence=AK288409 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090030J15;TENOR=Os01t0809450-01;KEGG=Os01t0809450-01
Chr01	irgsp1_rep	five_prime_UTR	34390098	34390150	.	-	.	Parent=Os01t0809450-01
Chr01	irgsp1_rep	CDS	34389834	34390097	.	-	0	Parent=Os01t0809450-01
Chr01	irgsp1_rep	three_prime_UTR	34386303	34389833	.	-	.	Parent=Os01t0809450-01
Chr01	irgsp1_rep	mRNA	34406376	34409200	.	+	.	ID=Os01t0809900-01;Name=Os01t0809900-01;Locus_id=Os01g0809900;Note=FAD dependent oxidoreductase domain containing protein.;Transcript_evidence=AK120681 (DDBJ%2C Best hit);ORF_evidence=XP_002876382.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FAD dependent oxidoreductase (IPR006076);NIAS_FLcDNA=J013162P12;Expression=AK120681;TENOR=Os01t0809900-01;KEGG=Os01t0809900-01
Chr01	irgsp1_rep	five_prime_UTR	34406376	34406397	.	+	.	Parent=Os01t0809900-01
Chr01	irgsp1_rep	CDS	34406398	34406655	.	+	0	Parent=Os01t0809900-01
Chr01	irgsp1_rep	CDS	34407289	34407570	.	+	0	Parent=Os01t0809900-01
Chr01	irgsp1_rep	CDS	34407938	34408374	.	+	0	Parent=Os01t0809900-01
Chr01	irgsp1_rep	CDS	34408541	34408700	.	+	1	Parent=Os01t0809900-01
Chr01	irgsp1_rep	CDS	34408775	34408888	.	+	0	Parent=Os01t0809900-01
Chr01	irgsp1_rep	three_prime_UTR	34408889	34409200	.	+	.	Parent=Os01t0809900-01
Chr01	irgsp1_rep	mRNA	34409662	34412529	.	-	.	ID=Os01t0810000-01;Name=Os01t0810000-01;Locus_id=Os01g0810000;Note=Utp11 family protein.;Transcript_evidence=AK102143 (DDBJ%2C Best hit);ORF_evidence=NP_001150340.1 (RefSeq);GO=Biological Process: rRNA processing (GO:0006364),Cellular Component: small-subunit processome (GO:0032040);InterPro=Small-subunit processome%2C Utp11 (IPR007144);NIAS_FLcDNA=J033086A13;Expression=AK102143;TENOR=Os01t0810000-01;KEGG=Os01t0810000-01
Chr01	irgsp1_rep	five_prime_UTR	34412414	34412529	.	-	.	Parent=Os01t0810000-01
Chr01	irgsp1_rep	CDS	34412358	34412413	.	-	0	Parent=Os01t0810000-01
Chr01	irgsp1_rep	CDS	34412076	34412166	.	-	1	Parent=Os01t0810000-01
Chr01	irgsp1_rep	CDS	34411537	34411628	.	-	0	Parent=Os01t0810000-01
Chr01	irgsp1_rep	CDS	34411355	34411448	.	-	1	Parent=Os01t0810000-01
Chr01	irgsp1_rep	CDS	34411168	34411247	.	-	0	Parent=Os01t0810000-01
Chr01	irgsp1_rep	CDS	34410976	34411059	.	-	1	Parent=Os01t0810000-01
Chr01	irgsp1_rep	CDS	34410560	34410659	.	-	1	Parent=Os01t0810000-01
Chr01	irgsp1_rep	CDS	34409990	34410082	.	-	0	Parent=Os01t0810000-01
Chr01	irgsp1_rep	three_prime_UTR	34409989	34409989	.	-	.	Parent=Os01t0810000-01
Chr01	irgsp1_rep	three_prime_UTR	34409662	34409912	.	-	.	Parent=Os01t0810000-01
Chr01	irgsp1_rep	mRNA	34409226	34412476	.	-	.	ID=Os01t0810000-02;Name=Os01t0810000-02;Locus_id=Os01g0810000;Note=Utp11 family protein.;Transcript_evidence=AK120752 (DDBJ%2C Best hit);ORF_evidence=NP_001150340.1 (RefSeq);GO=Biological Process: rRNA processing (GO:0006364),Cellular Component: small-subunit processome (GO:0032040);InterPro=Small-subunit processome%2C Utp11 (IPR007144);NIAS_FLcDNA=J023006E09;Expression=AK120752;TENOR=Os01t0810000-02;KEGG=Os01t0810000-02
Chr01	irgsp1_rep	five_prime_UTR	34412414	34412476	.	-	.	Parent=Os01t0810000-02
Chr01	irgsp1_rep	CDS	34412358	34412413	.	-	0	Parent=Os01t0810000-02
Chr01	irgsp1_rep	CDS	34412076	34412166	.	-	1	Parent=Os01t0810000-02
Chr01	irgsp1_rep	CDS	34411537	34411628	.	-	0	Parent=Os01t0810000-02
Chr01	irgsp1_rep	CDS	34411355	34411448	.	-	1	Parent=Os01t0810000-02
Chr01	irgsp1_rep	CDS	34411168	34411247	.	-	0	Parent=Os01t0810000-02
Chr01	irgsp1_rep	CDS	34410976	34411059	.	-	1	Parent=Os01t0810000-02
Chr01	irgsp1_rep	CDS	34410560	34410659	.	-	1	Parent=Os01t0810000-02
Chr01	irgsp1_rep	CDS	34409994	34410082	.	-	0	Parent=Os01t0810000-02
Chr01	irgsp1_rep	CDS	34409909	34409912	.	-	1	Parent=Os01t0810000-02
Chr01	irgsp1_rep	three_prime_UTR	34409226	34409908	.	-	.	Parent=Os01t0810000-02
Chr01	irgsp1_rep	mRNA	34412916	34416988	.	-	.	ID=Os01t0810100-01;Name=Os01t0810100-01;Locus_id=Os01g0810100;Note=Ribonuclease III domain containing protein.;Transcript_evidence=AK071916 (DDBJ%2C Best hit);ORF_evidence=NP_001106055.1 (RefSeq);GO=Biological Process: RNA processing (GO:0006396),Biological Process: rRNA catabolic process (GO:0016075),Molecular Function: RNA binding (GO:0003723),Molecular Function: ribonuclease III activity (GO:0004525);InterPro=Ribonuclease III (IPR000999),Ribonuclease III%2C bacterial (IPR011907);NIAS_FLcDNA=J013071K12;TENOR=Os01t0810100-01
Chr01	irgsp1_rep	five_prime_UTR	34416894	34416988	.	-	.	Parent=Os01t0810100-01
Chr01	irgsp1_rep	CDS	34416103	34416893	.	-	0	Parent=Os01t0810100-01
Chr01	irgsp1_rep	CDS	34415070	34415274	.	-	1	Parent=Os01t0810100-01
Chr01	irgsp1_rep	CDS	34414788	34414988	.	-	0	Parent=Os01t0810100-01
Chr01	irgsp1_rep	CDS	34413733	34413819	.	-	0	Parent=Os01t0810100-01
Chr01	irgsp1_rep	CDS	34413321	34413638	.	-	0	Parent=Os01t0810100-01
Chr01	irgsp1_rep	three_prime_UTR	34412916	34413320	.	-	.	Parent=Os01t0810100-01
Chr01	irgsp1_rep	mRNA	34412941	34416926	.	-	.	ID=Os01t0810100-02;Name=Os01t0810100-02;Locus_id=Os01g0810100;Note=Ribonuclease III domain containing protein.;Transcript_evidence=AK104320 (DDBJ%2C Best hit),AK099056 (DDBJ%2C Best hit);ORF_evidence=NP_001106055.1 (RefSeq);GO=Biological Process: RNA processing (GO:0006396),Biological Process: rRNA catabolic process (GO:0016075),Molecular Function: RNA binding (GO:0003723),Molecular Function: ribonuclease III activity (GO:0004525);InterPro=Ribonuclease III (IPR000999),Ribonuclease III%2C bacterial (IPR011907);NIAS_FLcDNA=001-025-H01,J013156G16;Expression=AK104320;TENOR=Os01t0810100-02;KEGG=Os01t0810100-02
Chr01	irgsp1_rep	five_prime_UTR	34416894	34416926	.	-	.	Parent=Os01t0810100-02
Chr01	irgsp1_rep	CDS	34416103	34416893	.	-	0	Parent=Os01t0810100-02
Chr01	irgsp1_rep	CDS	34415070	34415274	.	-	1	Parent=Os01t0810100-02
Chr01	irgsp1_rep	CDS	34414788	34414988	.	-	0	Parent=Os01t0810100-02
Chr01	irgsp1_rep	CDS	34413733	34413819	.	-	0	Parent=Os01t0810100-02
Chr01	irgsp1_rep	CDS	34413321	34413638	.	-	0	Parent=Os01t0810100-02
Chr01	irgsp1_rep	three_prime_UTR	34412941	34413320	.	-	.	Parent=Os01t0810100-02
Chr01	irgsp1_rep	mRNA	34417119	34420330	.	+	.	ID=Os01t0810200-01;Name=Os01t0810200-01;Locus_id=Os01g0810200;Note=Cupin%2C RmlC-type domain containing protein.;Transcript_evidence=AK069286 (DDBJ%2C Best hit);ORF_evidence=B6UEW5 (UniProt);InterPro=RmlC-like jelly roll fold (IPR014710);NIAS_FLcDNA=J023010J12;Expression=AK069286;TENOR=Os01t0810200-01;KEGG=Os01t0810200-01
Chr01	irgsp1_rep	five_prime_UTR	34417119	34417220	.	+	.	Parent=Os01t0810200-01
Chr01	irgsp1_rep	CDS	34417221	34417572	.	+	0	Parent=Os01t0810200-01
Chr01	irgsp1_rep	CDS	34419245	34419369	.	+	2	Parent=Os01t0810200-01
Chr01	irgsp1_rep	CDS	34419442	34419645	.	+	0	Parent=Os01t0810200-01
Chr01	irgsp1_rep	three_prime_UTR	34419646	34419839	.	+	.	Parent=Os01t0810200-01
Chr01	irgsp1_rep	three_prime_UTR	34419927	34420330	.	+	.	Parent=Os01t0810200-01
Chr01	irgsp1_rep	mRNA	34421011	34423534	.	+	.	ID=Os01t0810300-01;Name=Os01t0810300-01;Locus_id=Os01g0810300;CGSNL Gene Symbol=CAM61;CGSNL Gene Name=CALMODULIN 61;Oryzabase Gene Symbol Synonym(s)=CaM61%2C OsCaM61%2C OsCML1%2C OsCML1d;Oryzabase Gene Name Synonym(s)=Calmodulin-61%2C Calmodulin-like 1%2C calmodulin-like protein%2C CaM-like protein;Note=Similar to Calmodulin-like protein.;Transcript_evidence=AK070889 (DDBJ%2C Best hit);ORF_evidence=Q8S1Y9 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J023074P12;Oryzabase=8971;Expression=AK070889;TENOR=Os01t0810300-01;KEGG=Os01t0810300-01
Chr01	irgsp1_rep	five_prime_UTR	34421011	34421093	.	+	.	Parent=Os01t0810300-01
Chr01	irgsp1_rep	CDS	34421094	34421169	.	+	0	Parent=Os01t0810300-01
Chr01	irgsp1_rep	CDS	34422779	34423148	.	+	2	Parent=Os01t0810300-01
Chr01	irgsp1_rep	CDS	34423275	34423392	.	+	1	Parent=Os01t0810300-01
Chr01	irgsp1_rep	three_prime_UTR	34423393	34423534	.	+	.	Parent=Os01t0810300-01
Chr01	irgsp1_rep	mRNA	34427858	34434677	.	+	.	ID=Os01t0810401-01;Name=Os01t0810401-01;Locus_id=Os01g0810401;Note=Non-protein coding transcript.;Transcript_evidence=AK242294 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J075191L13;TENOR=Os01t0810401-01
Chr01	irgsp1_rep	exon	34427858	34428091	.	+	.	Parent=Os01t0810401-01
Chr01	irgsp1_rep	exon	34431372	34431522	.	+	.	Parent=Os01t0810401-01
Chr01	irgsp1_rep	exon	34432380	34433301	.	+	.	Parent=Os01t0810401-01
Chr01	irgsp1_rep	exon	34433384	34433477	.	+	.	Parent=Os01t0810401-01
Chr01	irgsp1_rep	exon	34433813	34434677	.	+	.	Parent=Os01t0810401-01
Chr01	irgsp1_rep	mRNA	34428408	34436332	.	-	.	ID=Os01t0810500-00;Name=Os01t0810500-00;Locus_id=Os01g0810500;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B7FAC9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635),Malectin-like carbohydrate-binding domain (IPR024788);TENOR=Os01t0810500-00;KEGG=Os01t0810500-00
Chr01	irgsp1_rep	CDS	34436248	34436332	.	-	0	Parent=Os01t0810500-00
Chr01	irgsp1_rep	CDS	34432985	34433552	.	-	2	Parent=Os01t0810500-00
Chr01	irgsp1_rep	CDS	34432386	34432879	.	-	1	Parent=Os01t0810500-00
Chr01	irgsp1_rep	CDS	34431463	34431607	.	-	2	Parent=Os01t0810500-00
Chr01	irgsp1_rep	CDS	34431105	34431173	.	-	1	Parent=Os01t0810500-00
Chr01	irgsp1_rep	CDS	34430957	34431022	.	-	1	Parent=Os01t0810500-00
Chr01	irgsp1_rep	CDS	34430805	34430869	.	-	1	Parent=Os01t0810500-00
Chr01	irgsp1_rep	CDS	34430226	34430461	.	-	2	Parent=Os01t0810500-00
Chr01	irgsp1_rep	CDS	34429903	34430032	.	-	0	Parent=Os01t0810500-00
Chr01	irgsp1_rep	CDS	34429434	34429493	.	-	2	Parent=Os01t0810500-00
Chr01	irgsp1_rep	CDS	34429167	34429353	.	-	2	Parent=Os01t0810500-00
Chr01	irgsp1_rep	CDS	34428582	34429052	.	-	1	Parent=Os01t0810500-00
Chr01	irgsp1_rep	CDS	34428408	34428435	.	-	1	Parent=Os01t0810500-00
Chr01	irgsp1_rep	mRNA	34438388	34444340	.	-	.	ID=Os01t0810600-00;Name=Os01t0810600-00;Locus_id=Os01g0810600;CGSNL Gene Symbol=RLCK46;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 46;Oryzabase Gene Symbol Synonym(s)=OsRLCK46;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 46;Note=Similar to cDNA%2C clone: J100063K14%2C full insert sequence.;Transcript_evidence=ab initio prediction;ORF_evidence=B7FAC9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635),Malectin-like carbohydrate-binding domain (IPR024788);Oryzabase=18763;TENOR=Os01t0810600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	34444310	34444340	.	-	0	Parent=Os01t0810600-00
Chr01	irgsp1_rep	CDS	34441926	34442493	.	-	2	Parent=Os01t0810600-00
Chr01	irgsp1_rep	CDS	34441307	34441791	.	-	1	Parent=Os01t0810600-00
Chr01	irgsp1_rep	CDS	34440535	34440770	.	-	2	Parent=Os01t0810600-00
Chr01	irgsp1_rep	CDS	34440211	34440340	.	-	0	Parent=Os01t0810600-00
Chr01	irgsp1_rep	CDS	34439933	34439992	.	-	2	Parent=Os01t0810600-00
Chr01	irgsp1_rep	CDS	34439667	34439853	.	-	2	Parent=Os01t0810600-00
Chr01	irgsp1_rep	CDS	34439077	34439547	.	-	1	Parent=Os01t0810600-00
Chr01	irgsp1_rep	CDS	34438388	34438598	.	-	1	Parent=Os01t0810600-00
Chr01	irgsp1_rep	mRNA	34438164	34442422	.	+	.	ID=Os01t0810700-01;Name=Os01t0810700-01;Locus_id=Os01g0810700;Note=Hypothetical gene.;Transcript_evidence=AK109802 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-147-F08;Expression=AK109802;TENOR=Os01t0810700-01;KEGG=Os01t0810700-01
Chr01	irgsp1_rep	five_prime_UTR	34438164	34438625	.	+	.	Parent=Os01t0810700-01
Chr01	irgsp1_rep	five_prime_UTR	34441240	34441915	.	+	.	Parent=Os01t0810700-01
Chr01	irgsp1_rep	CDS	34441916	34442137	.	+	0	Parent=Os01t0810700-01
Chr01	irgsp1_rep	three_prime_UTR	34442138	34442422	.	+	.	Parent=Os01t0810700-01
Chr01	irgsp1_rep	mRNA	34445750	34454439	.	-	.	ID=Os01t0810800-01;Name=Os01t0810800-01;Locus_id=Os01g0810800;Note=Hypothetical conserved gene.;Transcript_evidence=AK243390 (DDBJ%2C Best hit);ORF_evidence=B8AB87 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Malectin-like carbohydrate-binding domain (IPR024788);NIAS_FLcDNA=J100063K14;TENOR=Os01t0810800-01;KEGG=Os01t0810800-01
Chr01	irgsp1_rep	five_prime_UTR	34454392	34454439	.	-	.	Parent=Os01t0810800-01
Chr01	irgsp1_rep	CDS	34454265	34454391	.	-	0	Parent=Os01t0810800-01
Chr01	irgsp1_rep	CDS	34453366	34453933	.	-	2	Parent=Os01t0810800-01
Chr01	irgsp1_rep	CDS	34451887	34452386	.	-	1	Parent=Os01t0810800-01
Chr01	irgsp1_rep	CDS	34451584	34451725	.	-	2	Parent=Os01t0810800-01
Chr01	irgsp1_rep	CDS	34451433	34451504	.	-	1	Parent=Os01t0810800-01
Chr01	irgsp1_rep	CDS	34451288	34451353	.	-	1	Parent=Os01t0810800-01
Chr01	irgsp1_rep	CDS	34451122	34451202	.	-	1	Parent=Os01t0810800-01
Chr01	irgsp1_rep	CDS	34450598	34450749	.	-	1	Parent=Os01t0810800-01
Chr01	irgsp1_rep	CDS	34450240	34450481	.	-	2	Parent=Os01t0810800-01
Chr01	irgsp1_rep	CDS	34449531	34449660	.	-	0	Parent=Os01t0810800-01
Chr01	irgsp1_rep	CDS	34446821	34446877	.	-	2	Parent=Os01t0810800-01
Chr01	irgsp1_rep	CDS	34446052	34446728	.	-	2	Parent=Os01t0810800-01
Chr01	irgsp1_rep	three_prime_UTR	34445750	34446051	.	-	.	Parent=Os01t0810800-01
Chr01	irgsp1_rep	mRNA	34449889	34452565	.	+	.	ID=Os01t0810833-01;Name=Os01t0810833-01;Locus_id=Os01g0810833;Note=Non-protein coding transcript.;Transcript_evidence=AK063466 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-115-H09;TENOR=Os01t0810833-01
Chr01	irgsp1_rep	exon	34449889	34451637	.	+	.	Parent=Os01t0810833-01
Chr01	irgsp1_rep	exon	34451674	34452565	.	+	.	Parent=Os01t0810833-01
Chr01	irgsp1_rep	mRNA	34458199	34458626	.	+	.	ID=Os01t0810866-00;Name=Os01t0810866-00;Locus_id=Os01g0810866;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5VQN3 (UniProt);TENOR=Os01t0810866-00;KEGG=Os01t0810866-00
Chr01	irgsp1_rep	CDS	34458199	34458360	.	+	0	Parent=Os01t0810866-00
Chr01	irgsp1_rep	CDS	34458525	34458626	.	+	0	Parent=Os01t0810866-00
Chr01	irgsp1_rep	mRNA	34461157	34464358	.	-	.	ID=Os01t0811001-00;Name=Os01t0811001-00;Locus_id=Os01g0811001;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B7FAC9 (UniProt);GO=Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Malectin-like carbohydrate-binding domain (IPR024788);TENOR=Os01t0811001-00;KEGG=Os01t0811001-00
Chr01	irgsp1_rep	CDS	34463907	34464358	.	-	0	Parent=Os01t0811001-00
Chr01	irgsp1_rep	CDS	34463285	34463805	.	-	1	Parent=Os01t0811001-00
Chr01	irgsp1_rep	CDS	34462768	34462909	.	-	2	Parent=Os01t0811001-00
Chr01	irgsp1_rep	CDS	34462474	34462545	.	-	1	Parent=Os01t0811001-00
Chr01	irgsp1_rep	CDS	34462179	34462259	.	-	1	Parent=Os01t0811001-00
Chr01	irgsp1_rep	CDS	34461571	34461639	.	-	1	Parent=Os01t0811001-00
Chr01	irgsp1_rep	CDS	34461157	34461460	.	-	1	Parent=Os01t0811001-00
Chr01	irgsp1_rep	mRNA	34471055	34475473	.	+	.	ID=Os01t0811100-01;Name=Os01t0811100-01;Locus_id=Os01g0811100;Oryzabase Gene Symbol Synonym(s)=OsPAG1%2C OsPSA7;Oryzabase Gene Name Synonym(s)=20S proteasome alpha7 subunit%2C 20S proteasome subunit alpha7;Note=Proteasome subunit alpha type 3 (EC 3.4.25.1) (20S proteasome alpha subunit G) (20S proteasome subunit alpha-7).;Transcript_evidence=AK103541 (DDBJ%2C Best hit);ORF_evidence=B8AB88 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603),Cellular Component: proteasome core complex (GO:0005839),Cellular Component: proteasome core complex%2C alpha-subunit complex (GO:0019773),Molecular Function: endopeptidase activity (GO:0004175),Molecular Function: threonine-type endopeptidase activity (GO:0004298);InterPro=Proteasome%2C alpha-subunit%2C conserved site (IPR000426),Proteasome%2C subunit alpha/beta (IPR001353),Proteasome A-type subunit (IPR023332);NIAS_FLcDNA=J033132C12;Oryzabase=14499;Expression=AK103541;TENOR=Os01t0811100-01;KEGG=Os01t0811100-01 (EC:3.4.25.1)
Chr01	irgsp1_rep	five_prime_UTR	34471055	34471282	.	+	.	Parent=Os01t0811100-01
Chr01	irgsp1_rep	five_prime_UTR	34471638	34471663	.	+	.	Parent=Os01t0811100-01
Chr01	irgsp1_rep	CDS	34471664	34471767	.	+	0	Parent=Os01t0811100-01
Chr01	irgsp1_rep	CDS	34471865	34471904	.	+	1	Parent=Os01t0811100-01
Chr01	irgsp1_rep	CDS	34471986	34472069	.	+	0	Parent=Os01t0811100-01
Chr01	irgsp1_rep	CDS	34472323	34472396	.	+	0	Parent=Os01t0811100-01
Chr01	irgsp1_rep	CDS	34472467	34472553	.	+	1	Parent=Os01t0811100-01
Chr01	irgsp1_rep	CDS	34472663	34472747	.	+	1	Parent=Os01t0811100-01
Chr01	irgsp1_rep	CDS	34472956	34473002	.	+	0	Parent=Os01t0811100-01
Chr01	irgsp1_rep	CDS	34473789	34473854	.	+	1	Parent=Os01t0811100-01
Chr01	irgsp1_rep	CDS	34475048	34475138	.	+	1	Parent=Os01t0811100-01
Chr01	irgsp1_rep	CDS	34475218	34475289	.	+	0	Parent=Os01t0811100-01
Chr01	irgsp1_rep	three_prime_UTR	34475290	34475473	.	+	.	Parent=Os01t0811100-01
Chr01	irgsp1_rep	mRNA	34471122	34475473	.	+	.	ID=Os01t0811100-02;Name=Os01t0811100-02;Locus_id=Os01g0811100;Oryzabase Gene Symbol Synonym(s)=OsPAG1%2C OsPSA7;Oryzabase Gene Name Synonym(s)=20S proteasome alpha7 subunit%2C 20S proteasome subunit alpha7;Note=Proteasome subunit alpha type 3 (EC 3.4.25.1) (20S proteasome alpha subunit G) (20S proteasome subunit alpha-7).;Transcript_evidence=AK061784 (DDBJ%2C Best hit);ORF_evidence=B8AB88 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603),Cellular Component: proteasome core complex (GO:0005839),Cellular Component: proteasome core complex%2C alpha-subunit complex (GO:0019773),Molecular Function: endopeptidase activity (GO:0004175),Molecular Function: threonine-type endopeptidase activity (GO:0004298);InterPro=Proteasome%2C alpha-subunit%2C conserved site (IPR000426),Proteasome%2C subunit alpha/beta (IPR001353),Proteasome A-type subunit (IPR023332);NIAS_FLcDNA=001-039-E06;Oryzabase=14499;Expression=AK061784;TENOR=Os01t0811100-02;KEGG=Os01t0811100-02 (EC:3.4.25.1)
Chr01	irgsp1_rep	five_prime_UTR	34471122	34471282	.	+	.	Parent=Os01t0811100-02
Chr01	irgsp1_rep	five_prime_UTR	34471638	34471663	.	+	.	Parent=Os01t0811100-02
Chr01	irgsp1_rep	CDS	34471664	34471767	.	+	0	Parent=Os01t0811100-02
Chr01	irgsp1_rep	CDS	34471865	34471904	.	+	1	Parent=Os01t0811100-02
Chr01	irgsp1_rep	CDS	34471986	34472069	.	+	0	Parent=Os01t0811100-02
Chr01	irgsp1_rep	CDS	34472323	34472396	.	+	0	Parent=Os01t0811100-02
Chr01	irgsp1_rep	CDS	34472467	34472553	.	+	1	Parent=Os01t0811100-02
Chr01	irgsp1_rep	CDS	34472663	34472747	.	+	1	Parent=Os01t0811100-02
Chr01	irgsp1_rep	CDS	34472956	34473002	.	+	0	Parent=Os01t0811100-02
Chr01	irgsp1_rep	CDS	34473789	34473854	.	+	1	Parent=Os01t0811100-02
Chr01	irgsp1_rep	CDS	34475048	34475138	.	+	1	Parent=Os01t0811100-02
Chr01	irgsp1_rep	CDS	34475218	34475289	.	+	0	Parent=Os01t0811100-02
Chr01	irgsp1_rep	three_prime_UTR	34475290	34475473	.	+	.	Parent=Os01t0811100-02
Chr01	irgsp1_rep	mRNA	34480570	34484981	.	+	.	ID=Os01t0811300-01;Name=Os01t0811300-01;Locus_id=Os01g0811300;RAP-DB Gene Symbol Synonym(s)=OsSUVH7;Oryzabase Gene Symbol Synonym(s)=OsSET4%2C SDG709%2C OsSUVH7;Oryzabase Gene Name Synonym(s)=SET protein 4%2C SUVH Histone Methyltransferase 7;Note=DNA methylation reader%2C Response to salt stress;Transcript_evidence=AK065227;ORF_evidence=Q8RUS3;GO=Biological Process: histone methylation (GO:0016571),Biological Process: histone lysine methylation (GO:0034968),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: histone-lysine N-methyltransferase activity (GO:0018024),Cellular Component: nucleus (GO:0005634);InterPro=SRA-YDG superfamily (IPR036987),PUA-like superfamily (IPR015947),Histone H3-K9 methyltransferase%2C plant (IPR025794),SRA-YDG (IPR003105),Pre-SET domain (IPR007728),SET domain (IPR001214),Post-SET domain (IPR003616);NIAS_FLcDNA=J013002H03;Manual Curation=September 30%2C 2020;Literature_PMID=32938753;Oryzabase=13373;Expression=AK065227;TENOR=Os01t0811300-01;KEGG=Os01t0811300-01
Chr01	irgsp1_rep	five_prime_UTR	34480570	34480846	.	+	.	Parent=Os01t0811300-01
Chr01	irgsp1_rep	five_prime_UTR	34481267	34481289	.	+	.	Parent=Os01t0811300-01
Chr01	irgsp1_rep	CDS	34481290	34483500	.	+	0	Parent=Os01t0811300-01
Chr01	irgsp1_rep	three_prime_UTR	34483501	34483548	.	+	.	Parent=Os01t0811300-01
Chr01	irgsp1_rep	three_prime_UTR	34484618	34484981	.	+	.	Parent=Os01t0811300-01
Chr01	irgsp1_rep	mRNA	34485352	34489832	.	-	.	ID=Os01t0811400-01;Name=Os01t0811400-01;Locus_id=Os01g0811400;Note=Similar to predicted protein.;Transcript_evidence=AK288096 (DDBJ%2C Best hit);ORF_evidence=XP_002871741.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);NIAS_FLcDNA=J075192C12;TENOR=Os01t0811400-01;KEGG=Os01t0811400-01
Chr01	irgsp1_rep	five_prime_UTR	34489798	34489832	.	-	.	Parent=Os01t0811400-01
Chr01	irgsp1_rep	CDS	34489333	34489797	.	-	0	Parent=Os01t0811400-01
Chr01	irgsp1_rep	CDS	34488375	34488568	.	-	0	Parent=Os01t0811400-01
Chr01	irgsp1_rep	CDS	34487947	34487956	.	-	1	Parent=Os01t0811400-01
Chr01	irgsp1_rep	three_prime_UTR	34487799	34487946	.	-	.	Parent=Os01t0811400-01
Chr01	irgsp1_rep	three_prime_UTR	34487562	34487709	.	-	.	Parent=Os01t0811400-01
Chr01	irgsp1_rep	three_prime_UTR	34487131	34487446	.	-	.	Parent=Os01t0811400-01
Chr01	irgsp1_rep	three_prime_UTR	34486053	34486163	.	-	.	Parent=Os01t0811400-01
Chr01	irgsp1_rep	three_prime_UTR	34485895	34485963	.	-	.	Parent=Os01t0811400-01
Chr01	irgsp1_rep	three_prime_UTR	34485352	34485672	.	-	.	Parent=Os01t0811400-01
Chr01	irgsp1_rep	mRNA	34508452	34512738	.	+	.	ID=Os01t0812000-01;Name=Os01t0812000-01;Locus_id=Os01g0812000;RAP-DB Gene Symbol Synonym(s)=GAMYB%2C MYBGA%2C OsGAMYB%2C GAM1%2C OsGAMyb%2C Os-MYBGA%2C Os GAMYB;RAP-DB Gene Name Synonym(s)=GIBBERELLIN MYB GENE%2C homologue to the barley Myb-like transcription factor%2C Transcription factor GAMYB%2C Gibberellin myb gene;CGSNL Gene Symbol=GAMYB;CGSNL Gene Name=GIBBERELLIN MYB GENE;Oryzabase Gene Symbol Synonym(s)=OsGAMYB%2C GAM1%2C OsGAMyb%2C Os-MYBGA%2C Os GAMYB%2C OsMYBGA%2C MYBGA;Oryzabase Gene Name Synonym(s)=homologue to the barley Myb-like transcription factor%2C Transcription factor GAMYB%2C Gibberellin myb gene;Note=Transcriptional activator of gibberellin-dependent alpha-amylase expression%2C Regulation of nutrient mobilization in germination;Transcript_evidence=AK119607;ORF_evidence=Q0JIC2;GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: Chromatin binding (GO:0003682);InterPro=Transcription factor%2C GAMYB (IPR016310),Homeodomain-like (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930);NIAS_FLcDNA=002-117-F06;Manual Curation=June 27%2C 2014;Literature_PMID=22773748;Oryzabase=2984;TENOR=Os01t0812000-01;KEGG=Os01t0812000-01
Chr01	irgsp1_rep	five_prime_UTR	34508452	34508745	.	+	.	Parent=Os01t0812000-01
Chr01	irgsp1_rep	five_prime_UTR	34509399	34509408	.	+	.	Parent=Os01t0812000-01
Chr01	irgsp1_rep	CDS	34509409	34509777	.	+	0	Parent=Os01t0812000-01
Chr01	irgsp1_rep	CDS	34511035	34512058	.	+	0	Parent=Os01t0812000-01
Chr01	irgsp1_rep	CDS	34512129	34512397	.	+	2	Parent=Os01t0812000-01
Chr01	irgsp1_rep	three_prime_UTR	34512398	34512439	.	+	.	Parent=Os01t0812000-01
Chr01	irgsp1_rep	three_prime_UTR	34512533	34512738	.	+	.	Parent=Os01t0812000-01
Chr01	irgsp1_rep	mRNA	34508454	34512738	.	+	.	ID=Os01t0812000-02;Name=Os01t0812000-02;Locus_id=Os01g0812000;RAP-DB Gene Symbol Synonym(s)=GAMYB%2C OsGAMYB%2C GAM1%2C OsGAMyb%2C Os-MYBGA%2C Os GAMYB;RAP-DB Gene Name Synonym(s)=GIBBERELLIN MYB GENE%2C homologue to the barley Myb-like transcription factor%2C Transcription factor GAMYB%2C Gibberellin myb gene;CGSNL Gene Symbol=GAMYB;CGSNL Gene Name=GIBBERELLIN MYB GENE;Oryzabase Gene Symbol Synonym(s)=OsGAMYB%2C GAM1%2C OsGAMyb%2C Os-MYBGA%2C Os GAMYB%2C OsMYBGA%2C MYBGA;Oryzabase Gene Name Synonym(s)=homologue to the barley Myb-like transcription factor%2C Transcription factor GAMYB%2C Gibberellin myb gene;Note=Myb-like transcription factor%2C Induction of alpha-amylase in aleurone%2C Pollen development;Transcript_evidence=AK102841;ORF_evidence=Q0JIC2,B7ETP5;GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: Chromatin binding (GO:0003682);InterPro=Transcription factor%2C GAMYB (IPR016310),Homeodomain-like (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930);NIAS_FLcDNA=J033109N02;Manual Curation=December 10%2C 2009;Literature_PMID=9150608,14688295,16792694,17052766;Oryzabase=2984;TENOR=Os01t0812000-02;KEGG=Os01t0812000-02
Chr01	irgsp1_rep	five_prime_UTR	34508454	34508745	.	+	.	Parent=Os01t0812000-02
Chr01	irgsp1_rep	five_prime_UTR	34509399	34509408	.	+	.	Parent=Os01t0812000-02
Chr01	irgsp1_rep	CDS	34509409	34509777	.	+	0	Parent=Os01t0812000-02
Chr01	irgsp1_rep	CDS	34511035	34512058	.	+	0	Parent=Os01t0812000-02
Chr01	irgsp1_rep	CDS	34512129	34512397	.	+	2	Parent=Os01t0812000-02
Chr01	irgsp1_rep	three_prime_UTR	34512398	34512738	.	+	.	Parent=Os01t0812000-02
Chr01	irgsp1_rep	mRNA	34508455	34512776	.	+	.	ID=Os01t0812000-03;Name=Os01t0812000-03;Locus_id=Os01g0812000;CGSNL Gene Symbol=GAMYB;CGSNL Gene Name=GIBBERELLIN MYB GENE;Oryzabase Gene Symbol Synonym(s)=OsGAMYB%2C GAM1%2C OsGAMyb%2C Os-MYBGA%2C Os GAMYB%2C OsMYBGA%2C MYBGA;Oryzabase Gene Name Synonym(s)=homologue to the barley Myb-like transcription factor%2C Transcription factor GAMYB%2C Gibberellin myb gene;Note=Similar to cDNA clone:J033109N02%2C full insert sequence.;Transcript_evidence=AK063951 (DDBJ%2C Best hit);ORF_evidence=B7ETP5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=001-123-F05;Oryzabase=2984;TENOR=Os01t0812000-03;KEGG=Os01t0812000-03
Chr01	irgsp1_rep	five_prime_UTR	34508455	34508745	.	+	.	Parent=Os01t0812000-03
Chr01	irgsp1_rep	five_prime_UTR	34509399	34509408	.	+	.	Parent=Os01t0812000-03
Chr01	irgsp1_rep	CDS	34509409	34509777	.	+	0	Parent=Os01t0812000-03
Chr01	irgsp1_rep	CDS	34511035	34512090	.	+	0	Parent=Os01t0812000-03
Chr01	irgsp1_rep	three_prime_UTR	34512091	34512776	.	+	.	Parent=Os01t0812000-03
Chr01	irgsp1_rep	mRNA	34509409	34512763	.	-	.	ID=Os01t0812025-00;Name=Os01t0812025-00;Locus_id=Os01g0812025;Note=Non-protein coding transcript.;Transcript_evidence=tplb0038i04 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os01t0812025-00
Chr01	irgsp1_rep	exon	34512132	34512763	.	-	.	Parent=Os01t0812025-00
Chr01	irgsp1_rep	exon	34511025	34512064	.	-	.	Parent=Os01t0812025-00
Chr01	irgsp1_rep	exon	34509409	34509772	.	-	.	Parent=Os01t0812025-00
Chr01	irgsp1_rep	mRNA	34515277	34520432	.	+	.	ID=Os01t0812050-00;Name=Os01t0812050-00;Locus_id=Os01g0812050;Note=Conserved hypothetical protein.;Transcript_evidence=AK370228 (DDBJ);ORF_evidence=Q7F2I6 (UniProt);TENOR=Os01t0812050-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	34515277	34515449	.	+	.	Parent=Os01t0812050-00
Chr01	irgsp1_rep	CDS	34515450	34515451	.	+	0	Parent=Os01t0812050-00
Chr01	irgsp1_rep	CDS	34516121	34518339	.	+	1	Parent=Os01t0812050-00
Chr01	irgsp1_rep	CDS	34518541	34520432	.	+	2	Parent=Os01t0812050-00
Chr01	irgsp1_rep	mRNA	34524498	34526528	.	+	.	ID=Os01t0812100-01;Name=Os01t0812100-01;Locus_id=Os01g0812100;CGSNL Gene Symbol=NHL25;Oryzabase Gene Symbol Synonym(s)=OsNHL25;Oryzabase Gene Name Synonym(s)=NDR1/HIN1-1ike gene 25;Note=Similar to NHL25.;Transcript_evidence=AK107118 (DDBJ%2C Best hit);ORF_evidence=NP_001147210.1 (RefSeq);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=002-124-B02;Oryzabase=22726;TENOR=Os01t0812100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	34524498	34524579	.	+	.	Parent=Os01t0812100-01
Chr01	irgsp1_rep	CDS	34524580	34524651	.	+	0	Parent=Os01t0812100-01
Chr01	irgsp1_rep	CDS	34525316	34526287	.	+	0	Parent=Os01t0812100-01
Chr01	irgsp1_rep	three_prime_UTR	34526288	34526528	.	+	.	Parent=Os01t0812100-01
Chr01	irgsp1_rep	mRNA	34531774	34533771	.	+	.	ID=Os01t0812200-01;Name=Os01t0812200-01;Locus_id=Os01g0812200;Oryzabase Gene Symbol Synonym(s)=OsFbox046%2C OsFbox46%2C Os_F0609;Oryzabase Gene Name Synonym(s)=F-box protein 46;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK072651 (DDBJ%2C Best hit),AK104334 (DDBJ%2C Best hit);ORF_evidence=B6U4I0 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023131F07,001-032-H05;Oryzabase=16845;TENOR=Os01t0812200-01
Chr01	irgsp1_rep	five_prime_UTR	34531774	34532070	.	+	.	Parent=Os01t0812200-01
Chr01	irgsp1_rep	five_prime_UTR	34532312	34532454	.	+	.	Parent=Os01t0812200-01
Chr01	irgsp1_rep	CDS	34532455	34533516	.	+	0	Parent=Os01t0812200-01
Chr01	irgsp1_rep	three_prime_UTR	34533517	34533771	.	+	.	Parent=Os01t0812200-01
Chr01	irgsp1_rep	mRNA	34547777	34549353	.	-	.	ID=Os01t0812600-01;Name=Os01t0812600-01;Locus_id=Os01g0812600;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK287754 (DDBJ%2C Best hit);ORF_evidence=NP_001172617.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J065157N06;TENOR=Os01t0812600-01;KEGG=Os01t0812600-01
Chr01	irgsp1_rep	five_prime_UTR	34549318	34549353	.	-	.	Parent=Os01t0812600-01
Chr01	irgsp1_rep	CDS	34549032	34549317	.	-	0	Parent=Os01t0812600-01
Chr01	irgsp1_rep	CDS	34548621	34548670	.	-	2	Parent=Os01t0812600-01
Chr01	irgsp1_rep	CDS	34548432	34548510	.	-	0	Parent=Os01t0812600-01
Chr01	irgsp1_rep	CDS	34548082	34548302	.	-	2	Parent=Os01t0812600-01
Chr01	irgsp1_rep	three_prime_UTR	34547777	34548081	.	-	.	Parent=Os01t0812600-01
Chr01	irgsp1_rep	mRNA	34550416	34552611	.	-	.	ID=Os01t0812800-01;Name=Os01t0812800-01;Locus_id=Os01g0812800;Oryzabase Gene Name Synonym(s)=Ribosomal protein L30;Note=Ribosomal protein L30e domain containing protein.;Transcript_evidence=AK062929 (DDBJ%2C Best hit);ORF_evidence=B6SYS9 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L30e (IPR000231),Ribosomal protein L7Ae/L30e/S12e/Gadd45 (IPR004038),Ribosomal protein L30e%2C conserved site (IPR022991);NIAS_FLcDNA=001-109-A05;Oryzabase=17673;Expression=AK062929;TENOR=Os01t0812800-01;KEGG=Os01t0812800-01
Chr01	irgsp1_rep	five_prime_UTR	34552577	34552611	.	-	.	Parent=Os01t0812800-01
Chr01	irgsp1_rep	CDS	34552556	34552576	.	-	0	Parent=Os01t0812800-01
Chr01	irgsp1_rep	CDS	34552344	34552449	.	-	0	Parent=Os01t0812800-01
Chr01	irgsp1_rep	CDS	34551035	34551136	.	-	2	Parent=Os01t0812800-01
Chr01	irgsp1_rep	CDS	34550810	34550878	.	-	2	Parent=Os01t0812800-01
Chr01	irgsp1_rep	CDS	34550656	34550696	.	-	2	Parent=Os01t0812800-01
Chr01	irgsp1_rep	three_prime_UTR	34550416	34550655	.	-	.	Parent=Os01t0812800-01
Chr01	irgsp1_rep	mRNA	34553385	34553900	.	-	.	ID=Os01t0812850-00;Name=Os01t0812850-00;Locus_id=Os01g0812850;Note=Conserved hypothetical protein.;Transcript_evidence=FP101076 (DDBJ);ORF_evidence=Q5VQR1 (UniProt);TENOR=Os01t0812850-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	34553884	34553900	.	-	.	Parent=Os01t0812850-00
Chr01	irgsp1_rep	CDS	34553590	34553883	.	-	0	Parent=Os01t0812850-00
Chr01	irgsp1_rep	three_prime_UTR	34553385	34553589	.	-	.	Parent=Os01t0812850-00
Chr01	irgsp1_rep	mRNA	34558533	34559935	.	-	.	ID=Os01t0812900-01;Name=Os01t0812900-01;Locus_id=Os01g0812900;Note=Similar to alphavirus core protein family.;Transcript_evidence=AK121582 (DDBJ%2C Best hit);ORF_evidence=NP_187476.1 (RefSeq);InterPro=Protein of unknown function DUF3411 (IPR021825);NIAS_FLcDNA=J033037D14;Expression=AK121582;TENOR=Os01t0812900-01;KEGG=Os01t0812900-01
Chr01	irgsp1_rep	five_prime_UTR	34559799	34559935	.	-	.	Parent=Os01t0812900-01
Chr01	irgsp1_rep	CDS	34558752	34559798	.	-	0	Parent=Os01t0812900-01
Chr01	irgsp1_rep	three_prime_UTR	34558533	34558751	.	-	.	Parent=Os01t0812900-01
Chr01	irgsp1_rep	mRNA	34560768	34564315	.	-	.	ID=Os01t0813000-01;Name=Os01t0813000-01;Locus_id=Os01g0813000;Note=Similar to 14 kDa zinc-binding protein.;Transcript_evidence=AK318562 (DDBJ%2C Best hit);ORF_evidence=NP_001105498.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Histidine triad (HIT) protein (IPR001310),Histidine triad motif (IPR011151);NIAS_FLcDNA=J075190F14;TENOR=Os01t0813000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	34561797	34564315	.	-	.	Parent=Os01t0813000-01
Chr01	irgsp1_rep	CDS	34561575	34561796	.	-	0	Parent=Os01t0813000-01
Chr01	irgsp1_rep	three_prime_UTR	34560768	34561574	.	-	.	Parent=Os01t0813000-01
Chr01	irgsp1_rep	mRNA	34565292	34568290	.	-	.	ID=Os01t0813100-01;Name=Os01t0813100-01;Locus_id=Os01g0813100;RAP-DB Gene Symbol Synonym(s)=HBF2%2C OsbZIP9;RAP-DB Gene Name Synonym(s)=Hd3a BINDING REPRESSOR FACTOR2%2C b-ZIP TRANSCRIPTION FACTOR 9;CGSNL Gene Symbol=BZIP9;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 9;Oryzabase Gene Symbol Synonym(s)=OsbZIP09%2C OsbZIP9%2C OsABF6%2C ABF6%2C HBF2;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 09%2C Hd3a BINDING REPRESSOR FACTOR2%2C Hd3a BINDING REPRESSOR FACTOR 2;Note=bZIP transcription factor%2C Modulation of the floral transition%2C Floral repressor;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700);InterPro=Basic-leucine zipper domain (IPR004827);Manual Curation=December 20%2C 2017;Literature_PMID=29042404;Oryzabase=10099;TENOR=Os01t0813100-00
Chr01	irgsp1_rep	CDS	34567436	34568290	.	-	0	Parent=Os01t0813100-01
Chr01	irgsp1_rep	CDS	34567192	34567263	.	-	0	Parent=Os01t0813100-01
Chr01	irgsp1_rep	CDS	34565726	34565806	.	-	0	Parent=Os01t0813100-01
Chr01	irgsp1_rep	three_prime_UTR	34565292	34565725	.	-	.	Parent=Os01t0813100-01
Chr01	irgsp1_rep	mRNA	34575196	34576640	.	+	.	ID=Os01t0813300-00;Name=Os01t0813300-00;Locus_id=Os01g0813300;CGSNL Gene Symbol=AP2/EREBP79;CGSNL Gene Name=APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 79;Oryzabase Gene Symbol Synonym(s)=AP2/EREBP#079;Oryzabase Gene Name Synonym(s)=APETALA2/ethylene-responsive element binding protein 79;Note=Similar to AP2/EREBP transcription factor.;Transcript_evidence=AY685121 (DDBJ%2C Best hit);ORF_evidence=Q7F2H5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);Oryzabase=10645;TENOR=Os01t0813300-00
Chr01	irgsp1_rep	five_prime_UTR	34575196	34575196	.	+	.	Parent=Os01t0813300-00
Chr01	irgsp1_rep	CDS	34575197	34575281	.	+	0	Parent=Os01t0813300-00
Chr01	irgsp1_rep	CDS	34575529	34575537	.	+	2	Parent=Os01t0813300-00
Chr01	irgsp1_rep	CDS	34575945	34576033	.	+	2	Parent=Os01t0813300-00
Chr01	irgsp1_rep	CDS	34576147	34576271	.	+	0	Parent=Os01t0813300-00
Chr01	irgsp1_rep	CDS	34576566	34576640	.	+	1	Parent=Os01t0813300-00
Chr01	irgsp1_rep	mRNA	34576922	34577619	.	-	.	ID=Os01t0813350-00;Name=Os01t0813350-00;Locus_id=Os01g0813350;Note=Hypothetical gene.;Transcript_evidence=EU949353 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0813350-00;KEGG=Os01t0813350-00
Chr01	irgsp1_rep	five_prime_UTR	34577607	34577619	.	-	.	Parent=Os01t0813350-00
Chr01	irgsp1_rep	CDS	34577151	34577606	.	-	0	Parent=Os01t0813350-00
Chr01	irgsp1_rep	three_prime_UTR	34576922	34577150	.	-	.	Parent=Os01t0813350-00
Chr01	irgsp1_rep	mRNA	34580341	34583532	.	+	.	ID=Os01t0813400-01;Name=Os01t0813400-01;Locus_id=Os01g0813400;Oryzabase Gene Symbol Synonym(s)=OsARFA1a%2C ARFA1a;Oryzabase Gene Name Synonym(s)=ADP-ribosylation factor 4%2C ADP-ribosylation factor A1a;Note=Similar to ADP-ribosylation factor 1.;Transcript_evidence=AK065370 (DDBJ%2C Best hit),AK062251 (DDBJ%2C Best hit);ORF_evidence=Q76ME3 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C SAR1-type (IPR006687),Small GTPase superfamily%2C ARF/SAR type (IPR006689),Small GTPase superfamily%2C ARF type (IPR024156);NIAS_FLcDNA=J013022G24,001-047-G02;Oryzabase=14183;TENOR=Os01t0813400-01
Chr01	irgsp1_rep	five_prime_UTR	34580341	34580543	.	+	.	Parent=Os01t0813400-01
Chr01	irgsp1_rep	five_prime_UTR	34581031	34581039	.	+	.	Parent=Os01t0813400-01
Chr01	irgsp1_rep	CDS	34581040	34581187	.	+	0	Parent=Os01t0813400-01
Chr01	irgsp1_rep	CDS	34581741	34581811	.	+	2	Parent=Os01t0813400-01
Chr01	irgsp1_rep	CDS	34581987	34582106	.	+	0	Parent=Os01t0813400-01
Chr01	irgsp1_rep	CDS	34582449	34582567	.	+	0	Parent=Os01t0813400-01
Chr01	irgsp1_rep	CDS	34582985	34583066	.	+	1	Parent=Os01t0813400-01
Chr01	irgsp1_rep	CDS	34583278	34583283	.	+	0	Parent=Os01t0813400-01
Chr01	irgsp1_rep	three_prime_UTR	34583284	34583532	.	+	.	Parent=Os01t0813400-01
Chr01	irgsp1_rep	mRNA	34583893	34587110	.	-	.	ID=Os01t0813500-01;Name=Os01t0813500-01;Locus_id=Os01g0813500;Oryzabase Gene Name Synonym(s)=Vacuolar protein sorting36 family protein%2C Vacuolar protein sorting 36 family protein;Note=EAP30 domain containing protein.;Transcript_evidence=AK073388 (DDBJ%2C Best hit);ORF_evidence=B6T768 (UniProt);InterPro=EAP30 (IPR007286);NIAS_FLcDNA=J033043F13;Oryzabase=20523;Expression=AK073388;TENOR=Os01t0813500-01;KEGG=Os01t0813500-01
Chr01	irgsp1_rep	five_prime_UTR	34587083	34587110	.	-	.	Parent=Os01t0813500-01
Chr01	irgsp1_rep	CDS	34586441	34587082	.	-	0	Parent=Os01t0813500-01
Chr01	irgsp1_rep	CDS	34586005	34586205	.	-	0	Parent=Os01t0813500-01
Chr01	irgsp1_rep	CDS	34585399	34585492	.	-	0	Parent=Os01t0813500-01
Chr01	irgsp1_rep	CDS	34585257	34585314	.	-	2	Parent=Os01t0813500-01
Chr01	irgsp1_rep	CDS	34585078	34585147	.	-	1	Parent=Os01t0813500-01
Chr01	irgsp1_rep	CDS	34584685	34584820	.	-	0	Parent=Os01t0813500-01
Chr01	irgsp1_rep	CDS	34584515	34584599	.	-	2	Parent=Os01t0813500-01
Chr01	irgsp1_rep	CDS	34584264	34584321	.	-	1	Parent=Os01t0813500-01
Chr01	irgsp1_rep	three_prime_UTR	34583893	34584263	.	-	.	Parent=Os01t0813500-01
Chr01	irgsp1_rep	mRNA	34588835	34602432	.	-	.	ID=Os01t0813700-01;Name=Os01t0813700-01;Locus_id=Os01g0813700;CGSNL Gene Symbol=BGLU2;CGSNL Gene Name=BETA-GLUCOSIDASE 2;Oryzabase Gene Symbol Synonym(s)=Os1bglu2%2C Os1Bglu2;Oryzabase Gene Name Synonym(s)=beta-glucosidase 2;Note=Similar to Non-cyanogenic beta-glucosidase.;Transcript_evidence=AK241229 (DDBJ%2C Best hit);ORF_evidence=B7F8N7 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J065127F19;Oryzabase=12076;TENOR=Os01t0813700-01;KEGG=Os01t0813700-01
Chr01	irgsp1_rep	five_prime_UTR	34602360	34602432	.	-	.	Parent=Os01t0813700-01
Chr01	irgsp1_rep	CDS	34602228	34602359	.	-	0	Parent=Os01t0813700-01
Chr01	irgsp1_rep	CDS	34602082	34602145	.	-	0	Parent=Os01t0813700-01
Chr01	irgsp1_rep	CDS	34600563	34600621	.	-	2	Parent=Os01t0813700-01
Chr01	irgsp1_rep	CDS	34599226	34599301	.	-	0	Parent=Os01t0813700-01
Chr01	irgsp1_rep	CDS	34599077	34599148	.	-	2	Parent=Os01t0813700-01
Chr01	irgsp1_rep	CDS	34598892	34598979	.	-	2	Parent=Os01t0813700-01
Chr01	irgsp1_rep	CDS	34598525	34598783	.	-	1	Parent=Os01t0813700-01
Chr01	irgsp1_rep	CDS	34598165	34598280	.	-	0	Parent=Os01t0813700-01
Chr01	irgsp1_rep	CDS	34597349	34597563	.	-	1	Parent=Os01t0813700-01
Chr01	irgsp1_rep	CDS	34596627	34596655	.	-	2	Parent=Os01t0813700-01
Chr01	irgsp1_rep	CDS	34596078	34596180	.	-	0	Parent=Os01t0813700-01
Chr01	irgsp1_rep	CDS	34589473	34589560	.	-	2	Parent=Os01t0813700-01
Chr01	irgsp1_rep	CDS	34589008	34589209	.	-	1	Parent=Os01t0813700-01
Chr01	irgsp1_rep	three_prime_UTR	34588835	34589007	.	-	.	Parent=Os01t0813700-01
Chr01	irgsp1_rep	mRNA	34605594	34611055	.	-	.	ID=Os01t0813800-01;Name=Os01t0813800-01;Locus_id=Os01g0813800;CGSNL Gene Symbol=BGLU3;CGSNL Gene Name=BETA-GLUCOSIDASE 3;Oryzabase Gene Symbol Synonym(s)=Os1bglu3%2C Os1Bglu3;Oryzabase Gene Name Synonym(s)=beta-glucosidase 3;Note=Similar to Beta-glucosidase 3.;Transcript_evidence=AK067934 (DDBJ%2C Best hit);ORF_evidence=Q8RZL1 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 1%2C active site (IPR018120);NIAS_FLcDNA=J013128K10;Oryzabase=12077;TENOR=Os01t0813800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	34610974	34611055	.	-	.	Parent=Os01t0813800-01
Chr01	irgsp1_rep	CDS	34610845	34610973	.	-	0	Parent=Os01t0813800-01
Chr01	irgsp1_rep	CDS	34610678	34610741	.	-	0	Parent=Os01t0813800-01
Chr01	irgsp1_rep	CDS	34610320	34610378	.	-	2	Parent=Os01t0813800-01
Chr01	irgsp1_rep	CDS	34609699	34609896	.	-	0	Parent=Os01t0813800-01
Chr01	irgsp1_rep	three_prime_UTR	34609673	34609698	.	-	.	Parent=Os01t0813800-01
Chr01	irgsp1_rep	three_prime_UTR	34609083	34609170	.	-	.	Parent=Os01t0813800-01
Chr01	irgsp1_rep	three_prime_UTR	34608701	34608959	.	-	.	Parent=Os01t0813800-01
Chr01	irgsp1_rep	three_prime_UTR	34607956	34608071	.	-	.	Parent=Os01t0813800-01
Chr01	irgsp1_rep	three_prime_UTR	34607509	34607723	.	-	.	Parent=Os01t0813800-01
Chr01	irgsp1_rep	three_prime_UTR	34606395	34607221	.	-	.	Parent=Os01t0813800-01
Chr01	irgsp1_rep	three_prime_UTR	34606119	34606201	.	-	.	Parent=Os01t0813800-01
Chr01	irgsp1_rep	three_prime_UTR	34605594	34605956	.	-	.	Parent=Os01t0813800-01
Chr01	irgsp1_rep	mRNA	34607410	34609152	.	-	.	ID=Os01t0813800-02;Name=Os01t0813800-02;Locus_id=Os01g0813800;CGSNL Gene Symbol=BGLU3;CGSNL Gene Name=BETA-GLUCOSIDASE 3;Oryzabase Gene Symbol Synonym(s)=Os1bglu3%2C Os1Bglu3;Oryzabase Gene Name Synonym(s)=beta-glucosidase 3;Note=Similar to cDNA%2C clone: J065127F19%2C full insert sequence.;Transcript_evidence=AK063065 (DDBJ%2C Best hit);ORF_evidence=Q8RZL1 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-110-G04;Oryzabase=12077;Expression=AK063065;TENOR=Os01t0813800-02;KEGG=Os01t0813800-02
Chr01	irgsp1_rep	five_prime_UTR	34609151	34609152	.	-	.	Parent=Os01t0813800-02
Chr01	irgsp1_rep	CDS	34609083	34609150	.	-	0	Parent=Os01t0813800-02
Chr01	irgsp1_rep	CDS	34608701	34608959	.	-	1	Parent=Os01t0813800-02
Chr01	irgsp1_rep	CDS	34607956	34608071	.	-	0	Parent=Os01t0813800-02
Chr01	irgsp1_rep	CDS	34607468	34607723	.	-	1	Parent=Os01t0813800-02
Chr01	irgsp1_rep	three_prime_UTR	34607410	34607467	.	-	.	Parent=Os01t0813800-02
Chr01	irgsp1_rep	mRNA	34612650	34619005	.	+	.	ID=Os01t0813900-01;Name=Os01t0813900-01;Locus_id=Os01g0813900;Oryzabase Gene Name Synonym(s)=calcium-binding repeat protein;Note=Similar to ZIGA1 protein (Fragment).;Transcript_evidence=AK101729 (DDBJ%2C Best hit);ORF_evidence=A2WWA8 (UniProt);GO=Biological Process: regulation of ARF GTPase activity (GO:0032312),Molecular Function: ARF GTPase activator activity (GO:0008060),Molecular Function: zinc ion binding (GO:0008270);InterPro=Arf GTPase activating protein (IPR001164);NIAS_FLcDNA=J033061F19;Oryzabase=15990;Expression=AK101729;TENOR=Os01t0813900-01;KEGG=Os01t0813900-01
Chr01	irgsp1_rep	five_prime_UTR	34612650	34612911	.	+	.	Parent=Os01t0813900-01
Chr01	irgsp1_rep	CDS	34612912	34613007	.	+	0	Parent=Os01t0813900-01
Chr01	irgsp1_rep	CDS	34613911	34613972	.	+	0	Parent=Os01t0813900-01
Chr01	irgsp1_rep	CDS	34614673	34614760	.	+	1	Parent=Os01t0813900-01
Chr01	irgsp1_rep	CDS	34614845	34614906	.	+	0	Parent=Os01t0813900-01
Chr01	irgsp1_rep	CDS	34614987	34615083	.	+	1	Parent=Os01t0813900-01
Chr01	irgsp1_rep	CDS	34615240	34615671	.	+	0	Parent=Os01t0813900-01
Chr01	irgsp1_rep	CDS	34615783	34616802	.	+	0	Parent=Os01t0813900-01
Chr01	irgsp1_rep	CDS	34616892	34617023	.	+	0	Parent=Os01t0813900-01
Chr01	irgsp1_rep	CDS	34617095	34617211	.	+	0	Parent=Os01t0813900-01
Chr01	irgsp1_rep	CDS	34617723	34617803	.	+	0	Parent=Os01t0813900-01
Chr01	irgsp1_rep	CDS	34618062	34618188	.	+	0	Parent=Os01t0813900-01
Chr01	irgsp1_rep	CDS	34618288	34618333	.	+	2	Parent=Os01t0813900-01
Chr01	irgsp1_rep	CDS	34618404	34618449	.	+	1	Parent=Os01t0813900-01
Chr01	irgsp1_rep	three_prime_UTR	34618450	34619005	.	+	.	Parent=Os01t0813900-01
Chr01	irgsp1_rep	mRNA	34620233	34623904	.	+	.	ID=Os01t0814000-01;Name=Os01t0814000-01;Locus_id=Os01g0814000;Note=Nuclear fragile X mental retardation-interacting protein 1%2C conserved domain domain containing protein.;Transcript_evidence=AK073886 (DDBJ%2C Best hit);ORF_evidence=B8AB98 (UniProt);InterPro=Nuclear fragile X mental retardation-interacting protein 1%2C conserved domain (IPR019496);NIAS_FLcDNA=J033075O06;Expression=AK073886;TENOR=Os01t0814000-01;KEGG=Os01t0814000-01
Chr01	irgsp1_rep	five_prime_UTR	34620233	34620270	.	+	.	Parent=Os01t0814000-01
Chr01	irgsp1_rep	CDS	34620271	34620816	.	+	0	Parent=Os01t0814000-01
Chr01	irgsp1_rep	CDS	34621522	34621711	.	+	0	Parent=Os01t0814000-01
Chr01	irgsp1_rep	CDS	34622005	34622113	.	+	2	Parent=Os01t0814000-01
Chr01	irgsp1_rep	CDS	34622563	34622653	.	+	1	Parent=Os01t0814000-01
Chr01	irgsp1_rep	CDS	34622755	34622817	.	+	0	Parent=Os01t0814000-01
Chr01	irgsp1_rep	CDS	34623047	34623649	.	+	0	Parent=Os01t0814000-01
Chr01	irgsp1_rep	three_prime_UTR	34623650	34623904	.	+	.	Parent=Os01t0814000-01
Chr01	irgsp1_rep	mRNA	34626255	34628601	.	+	.	ID=Os01t0814100-01;Name=Os01t0814100-01;Locus_id=Os01g0814100;Oryzabase Gene Symbol Synonym(s)=LTPG1%2C OsLTPG1%2C OsLTPg1%2C AGP%2C OsAGP%2C OsXYLP8%2C XYLP8;Oryzabase Gene Name Synonym(s)=GPI-anchored non-specific lipid transfer protein 1%2C type G nsLTP 1%2C type G non-specific lipid transfer protein 1%2C Arabinogalactan protein;Note=Similar to Bindin (Fragment).;Transcript_evidence=AK061173 (DDBJ%2C Best hit),AK059376 (DDBJ%2C Best hit);ORF_evidence=B6TD92 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=006-209-B11,001-026-F09;Oryzabase=13488;TENOR=Os01t0814100-01
Chr01	irgsp1_rep	five_prime_UTR	34626255	34626337	.	+	.	Parent=Os01t0814100-01
Chr01	irgsp1_rep	CDS	34626338	34626713	.	+	0	Parent=Os01t0814100-01
Chr01	irgsp1_rep	CDS	34627513	34627593	.	+	2	Parent=Os01t0814100-01
Chr01	irgsp1_rep	CDS	34628035	34628141	.	+	2	Parent=Os01t0814100-01
Chr01	irgsp1_rep	three_prime_UTR	34628142	34628601	.	+	.	Parent=Os01t0814100-01
Chr01	irgsp1_rep	mRNA	34628726	34629879	.	+	.	ID=Os01t0814150-00;Name=Os01t0814150-00;Locus_id=Os01g0814150;Note=Conserved hypothetical protein.;Transcript_evidence=CT834420 (DDBJ%2C Best hit);ORF_evidence=NP_001172620.1 (RefSeq);TENOR=Os01t0814150-00;KEGG=Os01t0814150-00
Chr01	irgsp1_rep	five_prime_UTR	34628726	34628820	.	+	.	Parent=Os01t0814150-00
Chr01	irgsp1_rep	CDS	34628821	34629163	.	+	0	Parent=Os01t0814150-00
Chr01	irgsp1_rep	CDS	34629512	34629564	.	+	2	Parent=Os01t0814150-00
Chr01	irgsp1_rep	three_prime_UTR	34629565	34629879	.	+	.	Parent=Os01t0814150-00
Chr01	irgsp1_rep	mRNA	34629568	34635205	.	-	.	ID=Os01t0814200-01;Name=Os01t0814200-01;Locus_id=Os01g0814200;Note=Endonuclease/exonuclease/phosphatase domain containing protein.;Transcript_evidence=AK073107 (DDBJ%2C Best hit);ORF_evidence=Q8RZK4 (UniProt);InterPro=Endonuclease/exonuclease/phosphatase (IPR005135);NIAS_FLcDNA=J033023H07;TENOR=Os01t0814200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	34634969	34635205	.	-	.	Parent=Os01t0814200-01
Chr01	irgsp1_rep	five_prime_UTR	34634419	34634528	.	-	.	Parent=Os01t0814200-01
Chr01	irgsp1_rep	five_prime_UTR	34634261	34634336	.	-	.	Parent=Os01t0814200-01
Chr01	irgsp1_rep	five_prime_UTR	34633438	34633590	.	-	.	Parent=Os01t0814200-01
Chr01	irgsp1_rep	CDS	34633358	34633437	.	-	0	Parent=Os01t0814200-01
Chr01	irgsp1_rep	CDS	34633161	34633265	.	-	1	Parent=Os01t0814200-01
Chr01	irgsp1_rep	CDS	34632204	34632852	.	-	1	Parent=Os01t0814200-01
Chr01	irgsp1_rep	three_prime_UTR	34631956	34632203	.	-	.	Parent=Os01t0814200-01
Chr01	irgsp1_rep	three_prime_UTR	34631758	34631813	.	-	.	Parent=Os01t0814200-01
Chr01	irgsp1_rep	three_prime_UTR	34631330	34631478	.	-	.	Parent=Os01t0814200-01
Chr01	irgsp1_rep	three_prime_UTR	34629568	34630870	.	-	.	Parent=Os01t0814200-01
Chr01	irgsp1_rep	mRNA	34632968	34635185	.	-	.	ID=Os01t0814200-02;Name=Os01t0814200-02;Locus_id=Os01g0814200;Note=Hypothetical conserved gene.;Transcript_evidence=AK070675 (DDBJ%2C Best hit);ORF_evidence=Q5N766 (UniProt);NIAS_FLcDNA=J023061B19;Expression=AK070675;TENOR=Os01t0814200-02;KEGG=Os01t0814200-02
Chr01	irgsp1_rep	five_prime_UTR	34634969	34635185	.	-	.	Parent=Os01t0814200-02
Chr01	irgsp1_rep	five_prime_UTR	34634449	34634528	.	-	.	Parent=Os01t0814200-02
Chr01	irgsp1_rep	CDS	34634419	34634448	.	-	0	Parent=Os01t0814200-02
Chr01	irgsp1_rep	CDS	34634261	34634336	.	-	0	Parent=Os01t0814200-02
Chr01	irgsp1_rep	CDS	34633531	34633590	.	-	2	Parent=Os01t0814200-02
Chr01	irgsp1_rep	CDS	34633358	34633424	.	-	2	Parent=Os01t0814200-02
Chr01	irgsp1_rep	CDS	34633043	34633265	.	-	1	Parent=Os01t0814200-02
Chr01	irgsp1_rep	three_prime_UTR	34632968	34633042	.	-	.	Parent=Os01t0814200-02
Chr01	irgsp1_rep	mRNA	34636155	34639624	.	+	.	ID=Os01t0814300-01;Name=Os01t0814300-01;Locus_id=Os01g0814300;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK103158 (DDBJ%2C Best hit);ORF_evidence=E6NUE8 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033121B04;Expression=AK103158;TENOR=Os01t0814300-01;KEGG=Os01t0814300-01
Chr01	irgsp1_rep	five_prime_UTR	34636155	34636332	.	+	.	Parent=Os01t0814300-01
Chr01	irgsp1_rep	CDS	34636333	34637319	.	+	0	Parent=Os01t0814300-01
Chr01	irgsp1_rep	CDS	34637799	34638626	.	+	0	Parent=Os01t0814300-01
Chr01	irgsp1_rep	three_prime_UTR	34638627	34638810	.	+	.	Parent=Os01t0814300-01
Chr01	irgsp1_rep	three_prime_UTR	34639330	34639624	.	+	.	Parent=Os01t0814300-01
Chr01	irgsp1_rep	mRNA	34639786	34642794	.	-	.	ID=Os01t0814400-01;Name=Os01t0814400-01;Locus_id=Os01g0814400;Note=Conserved hypothetical protein.;Transcript_evidence=AK069730 (DDBJ%2C Best hit);ORF_evidence=A2ZYY0 (UniProt);NIAS_FLcDNA=J023026G14;TENOR=Os01t0814400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	34642296	34642794	.	-	.	Parent=Os01t0814400-01
Chr01	irgsp1_rep	CDS	34642061	34642295	.	-	0	Parent=Os01t0814400-01
Chr01	irgsp1_rep	CDS	34641175	34641614	.	-	2	Parent=Os01t0814400-01
Chr01	irgsp1_rep	CDS	34640052	34640771	.	-	0	Parent=Os01t0814400-01
Chr01	irgsp1_rep	three_prime_UTR	34639786	34640051	.	-	.	Parent=Os01t0814400-01
Chr01	irgsp1_rep	mRNA	34639847	34641391	.	-	.	ID=Os01t0814400-02;Name=Os01t0814400-02;Locus_id=Os01g0814400;Note=Conserved hypothetical protein.;Transcript_evidence=AK104661 (DDBJ%2C Best hit);ORF_evidence=B8ABA0 (UniProt);NIAS_FLcDNA=006-311-E03;TENOR=Os01t0814400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	34641391	34641391	.	-	.	Parent=Os01t0814400-02
Chr01	irgsp1_rep	CDS	34641175	34641390	.	-	0	Parent=Os01t0814400-02
Chr01	irgsp1_rep	CDS	34640052	34640771	.	-	0	Parent=Os01t0814400-02
Chr01	irgsp1_rep	three_prime_UTR	34639847	34640051	.	-	.	Parent=Os01t0814400-02
Chr01	irgsp1_rep	mRNA	34639786	34641368	.	-	.	ID=Os01t0814400-03;Name=Os01t0814400-03;Locus_id=Os01g0814400;Note=Similar to 91A protein (Fragment).;Transcript_evidence=AK061117 (DDBJ%2C Best hit);ORF_evidence=B8ABA0 (UniProt);NIAS_FLcDNA=006-207-F03;Expression=AK061117;TENOR=Os01t0814400-03;KEGG=Os01t0814400-03
Chr01	irgsp1_rep	five_prime_UTR	34641367	34641368	.	-	.	Parent=Os01t0814400-03
Chr01	irgsp1_rep	CDS	34641175	34641366	.	-	0	Parent=Os01t0814400-03
Chr01	irgsp1_rep	CDS	34640052	34640771	.	-	0	Parent=Os01t0814400-03
Chr01	irgsp1_rep	three_prime_UTR	34639786	34640051	.	-	.	Parent=Os01t0814400-03
Chr01	irgsp1_rep	mRNA	34641171	34641617	.	+	.	ID=Os01t0814550-00;Name=Os01t0814550-00;Locus_id=Os01g0814550;Note=Non-protein coding transcript.;Transcript_evidence=BT086943 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0814550-00
Chr01	irgsp1_rep	exon	34641171	34641617	.	+	.	Parent=Os01t0814550-00
Chr01	irgsp1_rep	mRNA	34643311	34646270	.	-	.	ID=Os01t0814700-01;Name=Os01t0814700-01;Locus_id=Os01g0814700;Oryzabase Gene Symbol Synonym(s)=OsFbox047%2C OsFbox47%2C Os_F0754;Oryzabase Gene Name Synonym(s)=F-box protein 47;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK068533 (DDBJ%2C Best hit);ORF_evidence=NP_001147428.1 (RefSeq);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013153I12;Oryzabase=16846;Expression=AK068533;TENOR=Os01t0814700-01;KEGG=Os01t0814700-01
Chr01	irgsp1_rep	five_prime_UTR	34646168	34646270	.	-	.	Parent=Os01t0814700-01
Chr01	irgsp1_rep	CDS	34645902	34646167	.	-	0	Parent=Os01t0814700-01
Chr01	irgsp1_rep	CDS	34645651	34645824	.	-	1	Parent=Os01t0814700-01
Chr01	irgsp1_rep	CDS	34644328	34644455	.	-	1	Parent=Os01t0814700-01
Chr01	irgsp1_rep	CDS	34644208	34644209	.	-	2	Parent=Os01t0814700-01
Chr01	irgsp1_rep	three_prime_UTR	34644029	34644207	.	-	.	Parent=Os01t0814700-01
Chr01	irgsp1_rep	three_prime_UTR	34643685	34643772	.	-	.	Parent=Os01t0814700-01
Chr01	irgsp1_rep	three_prime_UTR	34643311	34643605	.	-	.	Parent=Os01t0814700-01
Chr01	irgsp1_rep	mRNA	34647146	34650771	.	-	.	ID=Os01t0814800-01;Name=Os01t0814800-01;Locus_id=Os01g0814800;RAP-DB Gene Symbol Synonym(s)=GRA78;RAP-DB Gene Name Synonym(s)=green-revertible albino 78;CGSNL Gene Symbol=GRA78;CGSNL Gene Name=GREEN-REVERTIBLE ALBINO 78;Oryzabase Gene Symbol Synonym(s)=OsGRA78;Oryzabase Gene Name Synonym(s)=green-revertible albino 78;Note=Putative S-sulfocysteine synthase%2C Chloroplast development at the early seedling;Transcript_evidence=AK065664;ORF_evidence=Q5N761;GO=Biological Process: cysteine biosynthetic process from serine (GO:0006535),Molecular Function: cysteine synthase activity (GO:0004124);InterPro=Tryptophan synthase beta subunit-like PLP-dependent enzyme (IPR036052),Cysteine synthase (IPR005856),Cysteine synthase CysK (IPR005859),Pyridoxal-phosphate dependent enzyme (IPR001926),Cysteine synthase/cystathionine beta-synthase%2C pyridoxal-phosphate attachment site (IPR001216);NIAS_FLcDNA=J013039L03;Manual Curation=March 11%2C 2019;Literature_PMID=30824011;Oryzabase=23134;Expression=AK065664;TENOR=Os01t0814800-01;KEGG=Os01t0814800-01 (EC:2.5.1.47);Subcellular location=chloroplast (GO:0009507)
Chr01	irgsp1_rep	five_prime_UTR	34650667	34650771	.	-	.	Parent=Os01t0814800-01
Chr01	irgsp1_rep	CDS	34650391	34650666	.	-	0	Parent=Os01t0814800-01
Chr01	irgsp1_rep	CDS	34649919	34650028	.	-	0	Parent=Os01t0814800-01
Chr01	irgsp1_rep	CDS	34649798	34649855	.	-	1	Parent=Os01t0814800-01
Chr01	irgsp1_rep	CDS	34649457	34649720	.	-	0	Parent=Os01t0814800-01
Chr01	irgsp1_rep	CDS	34649203	34649340	.	-	0	Parent=Os01t0814800-01
Chr01	irgsp1_rep	CDS	34648499	34648550	.	-	0	Parent=Os01t0814800-01
Chr01	irgsp1_rep	CDS	34648337	34648386	.	-	2	Parent=Os01t0814800-01
Chr01	irgsp1_rep	CDS	34648178	34648237	.	-	0	Parent=Os01t0814800-01
Chr01	irgsp1_rep	CDS	34647736	34647816	.	-	0	Parent=Os01t0814800-01
Chr01	irgsp1_rep	CDS	34647534	34647623	.	-	0	Parent=Os01t0814800-01
Chr01	irgsp1_rep	three_prime_UTR	34647146	34647533	.	-	.	Parent=Os01t0814800-01
Chr01	irgsp1_rep	mRNA	34652114	34655453	.	-	.	ID=Os01t0814900-01;Name=Os01t0814900-01;Locus_id=Os01g0814900;Oryzabase Gene Symbol Synonym(s)=NFR;Oryzabase Gene Name Synonym(s)=cytoChrome b5 reductase;Note=Similar to CytoChrome b5 reductase.;Transcript_evidence=AK058594 (DDBJ%2C Best hit),AK071859 (DDBJ%2C Best hit),AK103964 (DDBJ%2C Best hit);ORF_evidence=Q9ZPN0 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Oxidoreductase FAD/NAD(P)-binding (IPR001433),Flavoprotein pyridine nucleotide cytoChrome reductase (IPR001709),NADH:cytoChrome b5 reductase (CBR) (IPR001834),Oxidoreductase%2C FAD-binding domain (IPR008333),Ferredoxin reductase-type FAD-binding domain (IPR017927),Riboflavin synthase-like beta-barrel (IPR017938);NIAS_FLcDNA=001-017-H01,J023115I22,001-015-F12;Oryzabase=16023;Expression=AK058594;TENOR=Os01t0814900-01;KEGG=Os01t0814900-01 (EC:1.6.2.2)
Chr01	irgsp1_rep	five_prime_UTR	34655332	34655453	.	-	.	Parent=Os01t0814900-01
Chr01	irgsp1_rep	CDS	34655220	34655331	.	-	0	Parent=Os01t0814900-01
Chr01	irgsp1_rep	CDS	34654710	34654851	.	-	2	Parent=Os01t0814900-01
Chr01	irgsp1_rep	CDS	34654529	34654619	.	-	1	Parent=Os01t0814900-01
Chr01	irgsp1_rep	CDS	34654339	34654416	.	-	0	Parent=Os01t0814900-01
Chr01	irgsp1_rep	CDS	34654058	34654138	.	-	0	Parent=Os01t0814900-01
Chr01	irgsp1_rep	CDS	34653867	34653956	.	-	0	Parent=Os01t0814900-01
Chr01	irgsp1_rep	CDS	34653184	34653249	.	-	0	Parent=Os01t0814900-01
Chr01	irgsp1_rep	CDS	34652621	34652707	.	-	0	Parent=Os01t0814900-01
Chr01	irgsp1_rep	CDS	34652417	34652509	.	-	0	Parent=Os01t0814900-01
Chr01	irgsp1_rep	three_prime_UTR	34652114	34652416	.	-	.	Parent=Os01t0814900-01
Chr01	irgsp1_rep	mRNA	34664064	34665591	.	-	.	ID=Os01t0815100-00;Name=Os01t0815100-00;Locus_id=Os01g0815100;Note=Hypothetical conserved gene.;Transcript_evidence=EU970732 (DDBJ);ORF_evidence=XP_002884292.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L34Ae (IPR008195);TENOR=Os01t0815100-00;KEGG=Os01t0815100-00
Chr01	irgsp1_rep	CDS	34664980	34665591	.	-	0	Parent=Os01t0815100-00
Chr01	irgsp1_rep	CDS	34664246	34664911	.	-	0	Parent=Os01t0815100-00
Chr01	irgsp1_rep	three_prime_UTR	34664064	34664245	.	-	.	Parent=Os01t0815100-00
Chr01	irgsp1_rep	mRNA	34674484	34676184	.	-	.	ID=Os01t0815400-01;Name=Os01t0815400-01;Locus_id=Os01g0815400;Note=Conserved hypothetical protein.;Transcript_evidence=AK121388 (DDBJ%2C Best hit);ORF_evidence=A2WWB7 (UniProt);NIAS_FLcDNA=J023128J12;Expression=AK121388;TENOR=Os01t0815400-01;KEGG=Os01t0815400-01
Chr01	irgsp1_rep	five_prime_UTR	34676006	34676184	.	-	.	Parent=Os01t0815400-01
Chr01	irgsp1_rep	CDS	34675900	34676005	.	-	0	Parent=Os01t0815400-01
Chr01	irgsp1_rep	CDS	34675731	34675789	.	-	2	Parent=Os01t0815400-01
Chr01	irgsp1_rep	CDS	34674842	34674970	.	-	0	Parent=Os01t0815400-01
Chr01	irgsp1_rep	three_prime_UTR	34674484	34674841	.	-	.	Parent=Os01t0815400-01
Chr01	irgsp1_rep	mRNA	34678036	34682189	.	+	.	ID=Os01t0815700-01;Name=Os01t0815700-01;Locus_id=Os01g0815700;Note=Zinc finger%2C RanBP2-type domain containing protein.;Transcript_evidence=AK073519 (DDBJ%2C Best hit);ORF_evidence=B8ABA2 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RanBP2-type (IPR001876);NIAS_FLcDNA=J033041M07;Expression=AK073519;TENOR=Os01t0815700-01;KEGG=Os01t0815700-01
Chr01	irgsp1_rep	five_prime_UTR	34678036	34678105	.	+	.	Parent=Os01t0815700-01
Chr01	irgsp1_rep	CDS	34678106	34678624	.	+	0	Parent=Os01t0815700-01
Chr01	irgsp1_rep	CDS	34679107	34679366	.	+	0	Parent=Os01t0815700-01
Chr01	irgsp1_rep	CDS	34679786	34679884	.	+	1	Parent=Os01t0815700-01
Chr01	irgsp1_rep	CDS	34679978	34681952	.	+	1	Parent=Os01t0815700-01
Chr01	irgsp1_rep	three_prime_UTR	34681953	34682189	.	+	.	Parent=Os01t0815700-01
Chr01	irgsp1_rep	mRNA	34682524	34685373	.	+	.	ID=Os01t0815800-01;Name=Os01t0815800-01;Locus_id=Os01g0815800;Oryzabase Gene Symbol Synonym(s)=BIP123%2C RPL24a%2C OsRPL24a;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 123%2C BRI1-interacting protein 123%2C brassinosteroid receptor kinase-interacting protein 123%2C ribosomal protein L24a;Note=Similar to 60S ribosomal protein L24-A (L30A) (RP29) (YL21).;Transcript_evidence=AK101927 (DDBJ%2C Best hit),AK058612 (DDBJ%2C Best hit);ORF_evidence=NP_001150133.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L24e-related (IPR000988),Ribosomal protein L24e domain (IPR023441),Ribosomal protein L24e%2C conserved site (IPR023442);NIAS_FLcDNA=J033071P12,001-018-A11;Oryzabase=13692;TENOR=Os01t0815800-01
Chr01	irgsp1_rep	five_prime_UTR	34682524	34682573	.	+	.	Parent=Os01t0815800-01
Chr01	irgsp1_rep	five_prime_UTR	34683546	34683580	.	+	.	Parent=Os01t0815800-01
Chr01	irgsp1_rep	CDS	34683581	34683591	.	+	0	Parent=Os01t0815800-01
Chr01	irgsp1_rep	CDS	34683704	34683779	.	+	1	Parent=Os01t0815800-01
Chr01	irgsp1_rep	CDS	34683872	34683973	.	+	0	Parent=Os01t0815800-01
Chr01	irgsp1_rep	CDS	34684448	34684596	.	+	0	Parent=Os01t0815800-01
Chr01	irgsp1_rep	CDS	34684955	34685105	.	+	1	Parent=Os01t0815800-01
Chr01	irgsp1_rep	three_prime_UTR	34685106	34685373	.	+	.	Parent=Os01t0815800-01
Chr01	irgsp1_rep	mRNA	34685015	34685312	.	+	.	ID=Os01t0815800-02;Name=Os01t0815800-02;Locus_id=Os01g0815800;Oryzabase Gene Symbol Synonym(s)=BIP123%2C RPL24a%2C OsRPL24a;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 123%2C BRI1-interacting protein 123%2C brassinosteroid receptor kinase-interacting protein 123%2C ribosomal protein L24a;Note=Non-protein coding transcript.;Transcript_evidence=AK058706 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-019-C11;Oryzabase=13692;TENOR=Os01t0815800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	exon	34685015	34685312	.	+	.	Parent=Os01t0815800-02
Chr01	irgsp1_rep	mRNA	34683884	34684632	.	-	.	ID=Os01t0815850-00;Name=Os01t0815850-00;Locus_id=Os01g0815850;Note=Hypothetical conserved gene.;Transcript_evidence=BT065526 (DDBJ);ORF_evidence=C0HHH7 (UniProt);TENOR=Os01t0815850-00
Chr01	irgsp1_rep	CDS	34684453	34684632	.	-	0	Parent=Os01t0815850-00
Chr01	irgsp1_rep	three_prime_UTR	34684446	34684452	.	-	.	Parent=Os01t0815850-00
Chr01	irgsp1_rep	three_prime_UTR	34683884	34683971	.	-	.	Parent=Os01t0815850-00
Chr01	irgsp1_rep	mRNA	34688003	34689745	.	-	.	ID=Os01t0815900-01;Name=Os01t0815900-01;Locus_id=Os01g0815900;Oryzabase Gene Symbol Synonym(s)=PPR;Oryzabase Gene Name Synonym(s)=Pentatricopeptide repeat (PPR) protein;Note=Hypothetical conserved gene.;Transcript_evidence=AK241656 (DDBJ%2C Best hit);ORF_evidence=A2ZYY7 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J065191E22;Oryzabase=22514;TENOR=Os01t0815900-01;KEGG=Os01t0815900-01
Chr01	irgsp1_rep	five_prime_UTR	34689553	34689745	.	-	.	Parent=Os01t0815900-01
Chr01	irgsp1_rep	CDS	34688143	34689552	.	-	0	Parent=Os01t0815900-01
Chr01	irgsp1_rep	three_prime_UTR	34688003	34688142	.	-	.	Parent=Os01t0815900-01
Chr01	irgsp1_rep	mRNA	34689925	34691627	.	+	.	ID=Os01t0816000-00;Name=Os01t0816000-00;Locus_id=Os01g0816000;Note=Protein prenyltransferase domain containing protein.;Transcript_evidence=EU951349 (DDBJ);ORF_evidence=XP_002871645.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os01t0816000-00;KEGG=Os01t0816000-00
Chr01	irgsp1_rep	CDS	34689925	34691517	.	+	0	Parent=Os01t0816000-00
Chr01	irgsp1_rep	three_prime_UTR	34691518	34691627	.	+	.	Parent=Os01t0816000-00
Chr01	irgsp1_rep	mRNA	34692912	34694391	.	-	.	ID=Os01t0816100-01;Name=Os01t0816100-01;Locus_id=Os01g0816100;RAP-DB Gene Symbol Synonym(s)=OsNAC4;CGSNL Gene Symbol=NAC4;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OsNAC4%2C NAC68%2C ONAC068%2C OnNAC4*%2C OnNAC4%2C OsNAC4/ONAC068;Oryzabase Gene Name Synonym(s)=NAC 4%2C NAC domain-containing protein 68%2C ONNAC GENE 4%2C OsNAC gene-4%2C OnNAC gene-4;Note=Plant-specific transcription factor%2C Regulation of hypersensitive response (HR) cell death;Transcript_evidence=AK073848;ORF_evidence=Q52QH4;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=NAC domain superfamily (IPR036093),NAC domain (IPR003441);NIAS_FLcDNA=J033069M07;Manual Curation=October 19%2C 2018;Literature_PMID=28943882,19229294;Oryzabase=2262;Expression=AK073848;TENOR=Os01t0816100-01;KEGG=Os01t0816100-01
Chr01	irgsp1_rep	five_prime_UTR	34694272	34694391	.	-	.	Parent=Os01t0816100-01
Chr01	irgsp1_rep	CDS	34694070	34694271	.	-	0	Parent=Os01t0816100-01
Chr01	irgsp1_rep	CDS	34693685	34693971	.	-	2	Parent=Os01t0816100-01
Chr01	irgsp1_rep	CDS	34693117	34693584	.	-	0	Parent=Os01t0816100-01
Chr01	irgsp1_rep	three_prime_UTR	34692912	34693116	.	-	.	Parent=Os01t0816100-01
Chr01	irgsp1_rep	mRNA	34718156	34722561	.	-	.	ID=Os01t0816400-01;Name=Os01t0816400-01;Locus_id=Os01g0816400;Note=Similar to microtubule organization protein.;Transcript_evidence=AK107599 (DDBJ%2C Best hit);ORF_evidence=Q5N749 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=002-131-B03;TENOR=Os01t0816400-01
Chr01	irgsp1_rep	five_prime_UTR	34722303	34722561	.	-	.	Parent=Os01t0816400-01
Chr01	irgsp1_rep	CDS	34722140	34722302	.	-	0	Parent=Os01t0816400-01
Chr01	irgsp1_rep	CDS	34721881	34721986	.	-	2	Parent=Os01t0816400-01
Chr01	irgsp1_rep	CDS	34721667	34721790	.	-	1	Parent=Os01t0816400-01
Chr01	irgsp1_rep	CDS	34720438	34720517	.	-	0	Parent=Os01t0816400-01
Chr01	irgsp1_rep	CDS	34720185	34720362	.	-	1	Parent=Os01t0816400-01
Chr01	irgsp1_rep	CDS	34720024	34720088	.	-	0	Parent=Os01t0816400-01
Chr01	irgsp1_rep	CDS	34718829	34718911	.	-	1	Parent=Os01t0816400-01
Chr01	irgsp1_rep	CDS	34718664	34718749	.	-	2	Parent=Os01t0816400-01
Chr01	irgsp1_rep	CDS	34718448	34718561	.	-	0	Parent=Os01t0816400-01
Chr01	irgsp1_rep	CDS	34718156	34718276	.	-	0	Parent=Os01t0816400-01
Chr01	irgsp1_rep	mRNA	34705486	34722513	.	-	.	ID=Os01t0816400-02;Name=Os01t0816400-02;Locus_id=Os01g0816400;Note=Similar to Microtubule bundling polypeptide TMBP200.;Transcript_evidence=AK121331 (DDBJ%2C Best hit);ORF_evidence=Q5N749 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),HEAT%2C type 2 (IPR021133),CLASP N-terminal domain (IPR024395);NIAS_FLcDNA=J023118I11;Expression=AK121331;TENOR=Os01t0816400-02;KEGG=Os01t0816400-02
Chr01	irgsp1_rep	five_prime_UTR	34722303	34722513	.	-	.	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34722140	34722302	.	-	0	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34721881	34721986	.	-	2	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34721667	34721790	.	-	1	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34720438	34720517	.	-	0	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34720185	34720362	.	-	1	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34720024	34720088	.	-	0	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34718829	34718911	.	-	1	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34718664	34718749	.	-	2	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34718448	34718561	.	-	0	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34718157	34718276	.	-	0	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34717529	34717631	.	-	0	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34717145	34717281	.	-	2	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34716993	34717058	.	-	0	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34716808	34716916	.	-	0	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34716672	34716712	.	-	2	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34716097	34716168	.	-	0	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34715884	34715988	.	-	0	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34715019	34715124	.	-	0	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34714635	34714747	.	-	2	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34714468	34714555	.	-	0	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34713697	34713797	.	-	2	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34713448	34713555	.	-	0	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34713265	34713370	.	-	0	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34713100	34713179	.	-	2	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34712869	34713018	.	-	0	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34712697	34712772	.	-	0	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34712471	34712595	.	-	2	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34712126	34712386	.	-	0	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34711945	34712019	.	-	0	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34711776	34711857	.	-	0	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34711558	34711679	.	-	2	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34711393	34711485	.	-	0	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34711222	34711299	.	-	0	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34710558	34710653	.	-	0	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34710358	34710459	.	-	0	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34710157	34710258	.	-	0	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34709798	34709980	.	-	0	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34709599	34709710	.	-	0	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34709193	34709269	.	-	2	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34708942	34709087	.	-	0	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34708709	34708826	.	-	1	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34708289	34708408	.	-	0	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34708143	34708220	.	-	0	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34707910	34708068	.	-	0	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34707681	34707839	.	-	0	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34707511	34707608	.	-	0	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34707261	34707417	.	-	1	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34707063	34707179	.	-	0	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34706864	34706959	.	-	0	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34706514	34706585	.	-	0	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34706187	34706430	.	-	0	Parent=Os01t0816400-02
Chr01	irgsp1_rep	CDS	34705860	34706101	.	-	2	Parent=Os01t0816400-02
Chr01	irgsp1_rep	three_prime_UTR	34705486	34705859	.	-	.	Parent=Os01t0816400-02
Chr01	irgsp1_rep	mRNA	34718448	34722319	.	+	.	ID=Os01t0816450-00;Name=Os01t0816450-00;Locus_id=Os01g0816450;Note=Non-protein coding transcript.;Transcript_evidence=BT085435 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0816450-00
Chr01	irgsp1_rep	exon	34718448	34718553	.	+	.	Parent=Os01t0816450-00
Chr01	irgsp1_rep	exon	34718657	34718749	.	+	.	Parent=Os01t0816450-00
Chr01	irgsp1_rep	exon	34718829	34718903	.	+	.	Parent=Os01t0816450-00
Chr01	irgsp1_rep	exon	34720015	34720088	.	+	.	Parent=Os01t0816450-00
Chr01	irgsp1_rep	exon	34720185	34720365	.	+	.	Parent=Os01t0816450-00
Chr01	irgsp1_rep	exon	34720443	34720516	.	+	.	Parent=Os01t0816450-00
Chr01	irgsp1_rep	exon	34721666	34721783	.	+	.	Parent=Os01t0816450-00
Chr01	irgsp1_rep	exon	34721874	34721985	.	+	.	Parent=Os01t0816450-00
Chr01	irgsp1_rep	exon	34722139	34722319	.	+	.	Parent=Os01t0816450-00
Chr01	irgsp1_rep	mRNA	34731151	34734804	.	-	.	ID=Os01t0816500-01;Name=Os01t0816500-01;Locus_id=Os01g0816500;Note=Similar to microtubule organization protein.;Transcript_evidence=AK242550 (DDBJ%2C Best hit);ORF_evidence=Q5N749 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989);NIAS_FLcDNA=J080319D10;TENOR=Os01t0816500-01;KEGG=Os01t0816500-01
Chr01	irgsp1_rep	five_prime_UTR	34734735	34734804	.	-	.	Parent=Os01t0816500-01
Chr01	irgsp1_rep	CDS	34734579	34734734	.	-	0	Parent=Os01t0816500-01
Chr01	irgsp1_rep	CDS	34733659	34733738	.	-	0	Parent=Os01t0816500-01
Chr01	irgsp1_rep	CDS	34733402	34733579	.	-	1	Parent=Os01t0816500-01
Chr01	irgsp1_rep	CDS	34733258	34733322	.	-	0	Parent=Os01t0816500-01
Chr01	irgsp1_rep	CDS	34733042	34733150	.	-	1	Parent=Os01t0816500-01
Chr01	irgsp1_rep	CDS	34732844	34732954	.	-	0	Parent=Os01t0816500-01
Chr01	irgsp1_rep	CDS	34731510	34731548	.	-	0	Parent=Os01t0816500-01
Chr01	irgsp1_rep	three_prime_UTR	34731151	34731509	.	-	.	Parent=Os01t0816500-01
Chr01	irgsp1_rep	mRNA	34732844	34735269	.	+	.	ID=Os01t0816525-00;Name=Os01t0816525-00;Locus_id=Os01g0816525;Note=Non-protein coding transcript.;Transcript_evidence=BT085435 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0816525-00
Chr01	irgsp1_rep	exon	34732844	34732954	.	+	.	Parent=Os01t0816525-00
Chr01	irgsp1_rep	exon	34733042	34733120	.	+	.	Parent=Os01t0816525-00
Chr01	irgsp1_rep	exon	34733243	34733568	.	+	.	Parent=Os01t0816525-00
Chr01	irgsp1_rep	exon	34733648	34733737	.	+	.	Parent=Os01t0816525-00
Chr01	irgsp1_rep	exon	34734578	34734705	.	+	.	Parent=Os01t0816525-00
Chr01	irgsp1_rep	exon	34734813	34734912	.	+	.	Parent=Os01t0816525-00
Chr01	irgsp1_rep	exon	34735039	34735269	.	+	.	Parent=Os01t0816525-00
Chr01	irgsp1_rep	mRNA	34738321	34746452	.	-	.	ID=Os01t0816550-01;Name=Os01t0816550-01;Locus_id=Os01g0816550;Note=Non-protein coding transcript.;Transcript_evidence=AK242081 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J075138F15;TENOR=Os01t0816550-01
Chr01	irgsp1_rep	exon	34746317	34746452	.	-	.	Parent=Os01t0816550-01
Chr01	irgsp1_rep	exon	34744673	34744712	.	-	.	Parent=Os01t0816550-01
Chr01	irgsp1_rep	exon	34738321	34738921	.	-	.	Parent=Os01t0816550-01
Chr01	irgsp1_rep	mRNA	34738566	34744023	.	+	.	ID=Os01t0816600-01;Name=Os01t0816600-01;Locus_id=Os01g0816600;Note=Similar to predicted protein.;Transcript_evidence=AK243409 (DDBJ%2C Best hit);ORF_evidence=C5DB47 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J100065N05;TENOR=Os01t0816600-01;KEGG=Os01t0816600-01
Chr01	irgsp1_rep	five_prime_UTR	34738566	34738789	.	+	.	Parent=Os01t0816600-01
Chr01	irgsp1_rep	five_prime_UTR	34738864	34738925	.	+	.	Parent=Os01t0816600-01
Chr01	irgsp1_rep	CDS	34738926	34738932	.	+	0	Parent=Os01t0816600-01
Chr01	irgsp1_rep	CDS	34739555	34739675	.	+	2	Parent=Os01t0816600-01
Chr01	irgsp1_rep	CDS	34739753	34739824	.	+	1	Parent=Os01t0816600-01
Chr01	irgsp1_rep	CDS	34739909	34739983	.	+	1	Parent=Os01t0816600-01
Chr01	irgsp1_rep	CDS	34740089	34740160	.	+	1	Parent=Os01t0816600-01
Chr01	irgsp1_rep	CDS	34740255	34740416	.	+	1	Parent=Os01t0816600-01
Chr01	irgsp1_rep	CDS	34740521	34740595	.	+	1	Parent=Os01t0816600-01
Chr01	irgsp1_rep	CDS	34740673	34740744	.	+	1	Parent=Os01t0816600-01
Chr01	irgsp1_rep	CDS	34740830	34740901	.	+	1	Parent=Os01t0816600-01
Chr01	irgsp1_rep	CDS	34740986	34741054	.	+	1	Parent=Os01t0816600-01
Chr01	irgsp1_rep	CDS	34741129	34741203	.	+	1	Parent=Os01t0816600-01
Chr01	irgsp1_rep	CDS	34741298	34741369	.	+	1	Parent=Os01t0816600-01
Chr01	irgsp1_rep	CDS	34741473	34741607	.	+	1	Parent=Os01t0816600-01
Chr01	irgsp1_rep	CDS	34741687	34742156	.	+	1	Parent=Os01t0816600-01
Chr01	irgsp1_rep	CDS	34742231	34742389	.	+	2	Parent=Os01t0816600-01
Chr01	irgsp1_rep	CDS	34742482	34742621	.	+	2	Parent=Os01t0816600-01
Chr01	irgsp1_rep	CDS	34742715	34742934	.	+	0	Parent=Os01t0816600-01
Chr01	irgsp1_rep	CDS	34743046	34743281	.	+	2	Parent=Os01t0816600-01
Chr01	irgsp1_rep	CDS	34743368	34743871	.	+	0	Parent=Os01t0816600-01
Chr01	irgsp1_rep	three_prime_UTR	34743872	34744023	.	+	.	Parent=Os01t0816600-01
Chr01	irgsp1_rep	mRNA	34746860	34749514	.	+	.	ID=Os01t0816700-01;Name=Os01t0816700-01;Locus_id=Os01g0816700;Note=Similar to L-ascorbate oxidase homolog precursor (EC 1.10.3.3) (Ascorbase).;Transcript_evidence=AK100654 (DDBJ%2C Best hit);ORF_evidence=E0X9N2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: copper ion binding (GO:0005507),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Multicopper oxidase%2C type 1 (IPR001117),Cupredoxin (IPR008972),Multicopper oxidase%2C type 2 (IPR011706),Multicopper oxidase%2C type 3 (IPR011707);NIAS_FLcDNA=J023111E13;Expression=AK100654;TENOR=Os01t0816700-01;KEGG=Os01t0816700-01 (EC:1.10.3.3)
Chr01	irgsp1_rep	five_prime_UTR	34746860	34747041	.	+	.	Parent=Os01t0816700-01
Chr01	irgsp1_rep	CDS	34747042	34747292	.	+	0	Parent=Os01t0816700-01
Chr01	irgsp1_rep	CDS	34747398	34748504	.	+	1	Parent=Os01t0816700-01
Chr01	irgsp1_rep	CDS	34748606	34748909	.	+	1	Parent=Os01t0816700-01
Chr01	irgsp1_rep	three_prime_UTR	34748910	34749514	.	+	.	Parent=Os01t0816700-01
Chr01	irgsp1_rep	mRNA	34747088	34748883	.	-	.	ID=Os01t0816850-00;Name=Os01t0816850-00;Locus_id=Os01g0816850;Note=Hypothetical protein.;Transcript_evidence=tplb0021n10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0816850-00
Chr01	irgsp1_rep	five_prime_UTR	34748593	34748883	.	-	.	Parent=Os01t0816850-00
Chr01	irgsp1_rep	five_prime_UTR	34747924	34748493	.	-	.	Parent=Os01t0816850-00
Chr01	irgsp1_rep	CDS	34747389	34747923	.	-	0	Parent=Os01t0816850-00
Chr01	irgsp1_rep	CDS	34747088	34747283	.	-	2	Parent=Os01t0816850-00
Chr01	irgsp1_rep	mRNA	34769362	34772195	.	-	.	ID=Os01t0817000-01;Name=Os01t0817000-01;Locus_id=Os01g0817000;Note=Protein of unknown function DUF607 family protein.;Transcript_evidence=AK072492 (DDBJ%2C Best hit);ORF_evidence=A2WWC7 (UniProt);InterPro=Coiled-coil domain containing protein 109%2C C-terminal (IPR006769);NIAS_FLcDNA=J023131P12;Expression=AK072492;TENOR=Os01t0817000-01;KEGG=Os01t0817000-01
Chr01	irgsp1_rep	five_prime_UTR	34772172	34772195	.	-	.	Parent=Os01t0817000-01
Chr01	irgsp1_rep	CDS	34771743	34772171	.	-	0	Parent=Os01t0817000-01
Chr01	irgsp1_rep	CDS	34769711	34770199	.	-	0	Parent=Os01t0817000-01
Chr01	irgsp1_rep	three_prime_UTR	34769362	34769710	.	-	.	Parent=Os01t0817000-01
Chr01	irgsp1_rep	mRNA	34776154	34780863	.	-	.	ID=Os01t0817100-01;Name=Os01t0817100-01;Locus_id=Os01g0817100;Note=TRAM%2C LAG1 and CLN8 homology domain containing protein.;Transcript_evidence=AK065721 (DDBJ%2C Best hit);ORF_evidence=A2WWC8 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=TRAM/LAG1/CLN8 homology domain (IPR006634);NIAS_FLcDNA=J013038F20;Expression=AK065721;TENOR=Os01t0817100-01;KEGG=Os01t0817100-01
Chr01	irgsp1_rep	five_prime_UTR	34780585	34780863	.	-	.	Parent=Os01t0817100-01
Chr01	irgsp1_rep	five_prime_UTR	34780403	34780428	.	-	.	Parent=Os01t0817100-01
Chr01	irgsp1_rep	CDS	34780325	34780402	.	-	0	Parent=Os01t0817100-01
Chr01	irgsp1_rep	CDS	34777867	34777955	.	-	0	Parent=Os01t0817100-01
Chr01	irgsp1_rep	CDS	34777640	34777766	.	-	1	Parent=Os01t0817100-01
Chr01	irgsp1_rep	CDS	34777375	34777449	.	-	0	Parent=Os01t0817100-01
Chr01	irgsp1_rep	CDS	34777153	34777274	.	-	0	Parent=Os01t0817100-01
Chr01	irgsp1_rep	CDS	34777000	34777075	.	-	1	Parent=Os01t0817100-01
Chr01	irgsp1_rep	CDS	34776839	34776898	.	-	0	Parent=Os01t0817100-01
Chr01	irgsp1_rep	CDS	34776541	34776696	.	-	0	Parent=Os01t0817100-01
Chr01	irgsp1_rep	three_prime_UTR	34776154	34776540	.	-	.	Parent=Os01t0817100-01
Chr01	irgsp1_rep	mRNA	34788192	34791588	.	+	.	ID=Os01t0817400-00;Name=Os01t0817400-00;Locus_id=Os01g0817400;CGSNL Gene Symbol=CHX17;CGSNL Gene Name=CATION/H+ EXCHANGER  17;Oryzabase Gene Symbol Synonym(s)=OsCHX17;Oryzabase Gene Name Synonym(s)=cation/H+ exchanger  17;Note=Similar to proton antiporter/ sodium:hydrogen antiporter.;Transcript_evidence=AK375782 (DDBJ);ORF_evidence=NP_178985.1 (RefSeq);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: solute:hydrogen antiporter activity (GO:0015299);InterPro=Cation/H+ exchanger (IPR006153);Oryzabase=22375;TENOR=Os01t0817400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	34788192	34788812	.	+	0	Parent=Os01t0817400-00
Chr01	irgsp1_rep	CDS	34788909	34789907	.	+	0	Parent=Os01t0817400-00
Chr01	irgsp1_rep	CDS	34789993	34790404	.	+	0	Parent=Os01t0817400-00
Chr01	irgsp1_rep	CDS	34790468	34791411	.	+	2	Parent=Os01t0817400-00
Chr01	irgsp1_rep	three_prime_UTR	34791412	34791588	.	+	.	Parent=Os01t0817400-00
Chr01	irgsp1_rep	mRNA	34801185	34802263	.	-	.	ID=Os01t0817633-01;Name=Os01t0817633-01;Locus_id=Os01g0817633;Note=Hypothetical gene.;Transcript_evidence=AK241063 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065065F16;TENOR=Os01t0817633-01;KEGG=Os01t0817633-01
Chr01	irgsp1_rep	five_prime_UTR	34801881	34802263	.	-	.	Parent=Os01t0817633-01
Chr01	irgsp1_rep	CDS	34801491	34801880	.	-	0	Parent=Os01t0817633-01
Chr01	irgsp1_rep	three_prime_UTR	34801185	34801490	.	-	.	Parent=Os01t0817633-01
Chr01	irgsp1_rep	mRNA	34801187	34802060	.	+	.	ID=Os01t0817650-00;Name=Os01t0817650-00;Locus_id=Os01g0817650;Note=Protein of unknown function DUF567 family protein.;Transcript_evidence=CT834971 (DDBJ%2C Best hit);ORF_evidence=NP_001147495.1 (RefSeq);GO=Biological Process: cellular metabolic process (GO:0044237);InterPro=Tubby%2C C-terminal (IPR000007),Initiation factor 2B-related (IPR000649),Protein of unknown function DUF567 (IPR007612);TENOR=Os01t0817650-00;KEGG=Os01t0817650-00
Chr01	irgsp1_rep	five_prime_UTR	34801187	34801305	.	+	.	Parent=Os01t0817650-00
Chr01	irgsp1_rep	CDS	34801306	34801947	.	+	0	Parent=Os01t0817650-00
Chr01	irgsp1_rep	three_prime_UTR	34801948	34802060	.	+	.	Parent=Os01t0817650-00
Chr01	irgsp1_rep	mRNA	34804310	34808017	.	+	.	ID=Os01t0817700-01;Name=Os01t0817700-01;Locus_id=Os01g0817700;Oryzabase Gene Symbol Synonym(s)=BPM;Oryzabase Gene Name Synonym(s)=2%2C 3-bisphosphoglycerate-independent phosphoglycerate mutase;Note=Similar to 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) (Phosphoglyceromutase) (BPG-independent PGAM) (PGAM-I).;Transcript_evidence=AK065059 (DDBJ%2C Best hit);ORF_evidence=NP_001105584.1 (RefSeq);GO=Biological Process: glucose catabolic process (GO:0006007),Biological Process: metabolic process (GO:0008152),Cellular Component: cytoplasm (GO:0005737),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphoglycerate mutase activity (GO:0004619),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: metal ion binding (GO:0046872);InterPro=Phosphoglycerate mutase%2C 2%2C3-bisphosphoglycerate-independent (IPR005995),Metalloenzyme (IPR006124),BPG-independent PGAM%2C N-terminal (IPR011258),Alkaline phosphatase-like%2C alpha/beta/alpha (IPR017849),Alkaline-phosphatase-like%2C core domain (IPR017850);NIAS_FLcDNA=J013001J10;Oryzabase=21700;Expression=AK065059;TENOR=Os01t0817700-01;KEGG=Os01t0817700-01 (EC:5.4.2.1)
Chr01	irgsp1_rep	five_prime_UTR	34804310	34804381	.	+	.	Parent=Os01t0817700-01
Chr01	irgsp1_rep	five_prime_UTR	34804697	34804715	.	+	.	Parent=Os01t0817700-01
Chr01	irgsp1_rep	CDS	34804716	34804877	.	+	0	Parent=Os01t0817700-01
Chr01	irgsp1_rep	CDS	34805194	34805321	.	+	0	Parent=Os01t0817700-01
Chr01	irgsp1_rep	CDS	34805413	34805563	.	+	1	Parent=Os01t0817700-01
Chr01	irgsp1_rep	CDS	34805661	34805864	.	+	0	Parent=Os01t0817700-01
Chr01	irgsp1_rep	CDS	34806015	34806436	.	+	0	Parent=Os01t0817700-01
Chr01	irgsp1_rep	CDS	34806829	34807024	.	+	1	Parent=Os01t0817700-01
Chr01	irgsp1_rep	CDS	34807104	34807199	.	+	0	Parent=Os01t0817700-01
Chr01	irgsp1_rep	CDS	34807289	34807444	.	+	0	Parent=Os01t0817700-01
Chr01	irgsp1_rep	CDS	34807598	34807762	.	+	0	Parent=Os01t0817700-01
Chr01	irgsp1_rep	three_prime_UTR	34807763	34808017	.	+	.	Parent=Os01t0817700-01
Chr01	irgsp1_rep	mRNA	34804712	34808023	.	+	.	ID=Os01t0817700-02;Name=Os01t0817700-02;Locus_id=Os01g0817700;Oryzabase Gene Symbol Synonym(s)=BPM;Oryzabase Gene Name Synonym(s)=2%2C 3-bisphosphoglycerate-independent phosphoglycerate mutase;Note=Similar to 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) (Phosphoglyceromutase) (BPG-independent PGAM) (PGAM-I).;Transcript_evidence=AK060836 (DDBJ%2C Best hit);ORF_evidence=NP_001105584.1 (RefSeq);GO=Biological Process: glucose catabolic process (GO:0006007),Biological Process: metabolic process (GO:0008152),Cellular Component: cytoplasm (GO:0005737),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphoglycerate mutase activity (GO:0004619),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: metal ion binding (GO:0046872);InterPro=Phosphoglycerate mutase%2C 2%2C3-bisphosphoglycerate-independent (IPR005995),Metalloenzyme (IPR006124),BPG-independent PGAM%2C N-terminal (IPR011258),Alkaline phosphatase-like%2C alpha/beta/alpha (IPR017849),Alkaline-phosphatase-like%2C core domain (IPR017850);NIAS_FLcDNA=001-034-C10;Oryzabase=21700;Expression=AK060836;TENOR=Os01t0817700-02;KEGG=Os01t0817700-02 (EC:5.4.2.1)
Chr01	irgsp1_rep	five_prime_UTR	34804712	34804715	.	+	.	Parent=Os01t0817700-02
Chr01	irgsp1_rep	CDS	34804716	34804877	.	+	0	Parent=Os01t0817700-02
Chr01	irgsp1_rep	CDS	34805194	34805321	.	+	0	Parent=Os01t0817700-02
Chr01	irgsp1_rep	CDS	34805413	34805563	.	+	1	Parent=Os01t0817700-02
Chr01	irgsp1_rep	CDS	34805661	34805864	.	+	0	Parent=Os01t0817700-02
Chr01	irgsp1_rep	CDS	34806015	34806436	.	+	0	Parent=Os01t0817700-02
Chr01	irgsp1_rep	CDS	34806829	34807024	.	+	1	Parent=Os01t0817700-02
Chr01	irgsp1_rep	CDS	34807104	34807199	.	+	0	Parent=Os01t0817700-02
Chr01	irgsp1_rep	CDS	34807289	34807444	.	+	0	Parent=Os01t0817700-02
Chr01	irgsp1_rep	CDS	34807598	34807762	.	+	0	Parent=Os01t0817700-02
Chr01	irgsp1_rep	three_prime_UTR	34807763	34808023	.	+	.	Parent=Os01t0817700-02
Chr01	irgsp1_rep	mRNA	34808265	34812170	.	-	.	ID=Os01t0817800-01;Name=Os01t0817800-01;Locus_id=Os01g0817800;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK073827 (DDBJ%2C Best hit);ORF_evidence=A2WWD4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943);NIAS_FLcDNA=J033068H02;Expression=AK073827;TENOR=Os01t0817800-01;KEGG=Os01t0817800-01
Chr01	irgsp1_rep	five_prime_UTR	34812021	34812170	.	-	.	Parent=Os01t0817800-01
Chr01	irgsp1_rep	CDS	34811829	34812020	.	-	0	Parent=Os01t0817800-01
Chr01	irgsp1_rep	CDS	34811087	34811231	.	-	0	Parent=Os01t0817800-01
Chr01	irgsp1_rep	CDS	34810860	34811010	.	-	2	Parent=Os01t0817800-01
Chr01	irgsp1_rep	CDS	34810655	34810780	.	-	1	Parent=Os01t0817800-01
Chr01	irgsp1_rep	CDS	34810495	34810575	.	-	1	Parent=Os01t0817800-01
Chr01	irgsp1_rep	CDS	34809702	34809894	.	-	1	Parent=Os01t0817800-01
Chr01	irgsp1_rep	CDS	34809327	34809597	.	-	0	Parent=Os01t0817800-01
Chr01	irgsp1_rep	CDS	34808491	34808696	.	-	2	Parent=Os01t0817800-01
Chr01	irgsp1_rep	three_prime_UTR	34808265	34808490	.	-	.	Parent=Os01t0817800-01
Chr01	irgsp1_rep	mRNA	34808259	34810977	.	-	.	ID=Os01t0817800-02;Name=Os01t0817800-02;Locus_id=Os01g0817800;Note=Similar to predicted protein.;Transcript_evidence=AK104032 (DDBJ%2C Best hit);ORF_evidence=A2WWD4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943);NIAS_FLcDNA=001-020-E08;Expression=AK104032;TENOR=Os01t0817800-02;KEGG=Os01t0817800-02
Chr01	irgsp1_rep	five_prime_UTR	34810976	34810977	.	-	.	Parent=Os01t0817800-02
Chr01	irgsp1_rep	CDS	34810860	34810975	.	-	0	Parent=Os01t0817800-02
Chr01	irgsp1_rep	CDS	34810655	34810780	.	-	1	Parent=Os01t0817800-02
Chr01	irgsp1_rep	CDS	34810495	34810575	.	-	1	Parent=Os01t0817800-02
Chr01	irgsp1_rep	CDS	34809702	34809894	.	-	1	Parent=Os01t0817800-02
Chr01	irgsp1_rep	CDS	34809327	34809597	.	-	0	Parent=Os01t0817800-02
Chr01	irgsp1_rep	CDS	34808491	34808696	.	-	2	Parent=Os01t0817800-02
Chr01	irgsp1_rep	three_prime_UTR	34808259	34808490	.	-	.	Parent=Os01t0817800-02
Chr01	irgsp1_rep	mRNA	34808485	34812066	.	+	.	ID=Os01t0817900-00;Name=Os01t0817900-00;Locus_id=Os01g0817900;Note=Hypothetical protein.;Transcript_evidence=tplb0051f06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0817900-00
Chr01	irgsp1_rep	five_prime_UTR	34808485	34808696	.	+	.	Parent=Os01t0817900-00
Chr01	irgsp1_rep	five_prime_UTR	34809327	34809588	.	+	.	Parent=Os01t0817900-00
Chr01	irgsp1_rep	five_prime_UTR	34809690	34809869	.	+	.	Parent=Os01t0817900-00
Chr01	irgsp1_rep	five_prime_UTR	34810473	34810572	.	+	.	Parent=Os01t0817900-00
Chr01	irgsp1_rep	five_prime_UTR	34810650	34810772	.	+	.	Parent=Os01t0817900-00
Chr01	irgsp1_rep	five_prime_UTR	34810855	34811002	.	+	.	Parent=Os01t0817900-00
Chr01	irgsp1_rep	five_prime_UTR	34811081	34811213	.	+	.	Parent=Os01t0817900-00
Chr01	irgsp1_rep	CDS	34811214	34811217	.	+	0	Parent=Os01t0817900-00
Chr01	irgsp1_rep	CDS	34811816	34812066	.	+	2	Parent=Os01t0817900-00
Chr01	irgsp1_rep	mRNA	34834574	34839121	.	+	.	ID=Os01t0818000-01;Name=Os01t0818000-01;Locus_id=Os01g0818000;Oryzabase Gene Symbol Synonym(s)=OsPILS6a%2C PILS6a;Oryzabase Gene Name Synonym(s)=PIN likes 6a;Note=Auxin efflux carrier domain containing protein.;Transcript_evidence=AK069848 (DDBJ%2C Best hit);ORF_evidence=XP_002870888.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Auxin efflux carrier (IPR004776);NIAS_FLcDNA=J023034N13;Oryzabase=19848;Expression=AK069848;TENOR=Os01t0818000-01;KEGG=Os01t0818000-01
Chr01	irgsp1_rep	five_prime_UTR	34834574	34834695	.	+	.	Parent=Os01t0818000-01
Chr01	irgsp1_rep	five_prime_UTR	34835378	34835427	.	+	.	Parent=Os01t0818000-01
Chr01	irgsp1_rep	CDS	34835428	34835622	.	+	0	Parent=Os01t0818000-01
Chr01	irgsp1_rep	CDS	34835805	34835884	.	+	0	Parent=Os01t0818000-01
Chr01	irgsp1_rep	CDS	34836337	34836461	.	+	1	Parent=Os01t0818000-01
Chr01	irgsp1_rep	CDS	34836549	34836670	.	+	2	Parent=Os01t0818000-01
Chr01	irgsp1_rep	CDS	34836812	34837042	.	+	0	Parent=Os01t0818000-01
Chr01	irgsp1_rep	CDS	34837133	34837207	.	+	0	Parent=Os01t0818000-01
Chr01	irgsp1_rep	CDS	34837301	34837401	.	+	0	Parent=Os01t0818000-01
Chr01	irgsp1_rep	CDS	34837520	34837572	.	+	1	Parent=Os01t0818000-01
Chr01	irgsp1_rep	CDS	34837690	34837884	.	+	2	Parent=Os01t0818000-01
Chr01	irgsp1_rep	CDS	34838074	34838195	.	+	2	Parent=Os01t0818000-01
Chr01	irgsp1_rep	three_prime_UTR	34838196	34838210	.	+	.	Parent=Os01t0818000-01
Chr01	irgsp1_rep	three_prime_UTR	34838317	34838685	.	+	.	Parent=Os01t0818000-01
Chr01	irgsp1_rep	three_prime_UTR	34839008	34839121	.	+	.	Parent=Os01t0818000-01
Chr01	irgsp1_rep	mRNA	34834581	34839504	.	+	.	ID=Os01t0818000-02;Name=Os01t0818000-02;Locus_id=Os01g0818000;Oryzabase Gene Symbol Synonym(s)=OsPILS6a%2C PILS6a;Oryzabase Gene Name Synonym(s)=PIN likes 6a;Note=Auxin efflux carrier domain containing protein.;Transcript_evidence=AK070194 (DDBJ%2C Best hit);ORF_evidence=XP_002870888.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Auxin efflux carrier (IPR004776);NIAS_FLcDNA=J023041H12;Oryzabase=19848;Expression=AK070194;TENOR=Os01t0818000-02;KEGG=Os01t0818000-02
Chr01	irgsp1_rep	five_prime_UTR	34834581	34834695	.	+	.	Parent=Os01t0818000-02
Chr01	irgsp1_rep	five_prime_UTR	34835347	34835427	.	+	.	Parent=Os01t0818000-02
Chr01	irgsp1_rep	CDS	34835428	34835622	.	+	0	Parent=Os01t0818000-02
Chr01	irgsp1_rep	CDS	34835805	34835884	.	+	0	Parent=Os01t0818000-02
Chr01	irgsp1_rep	CDS	34836337	34836461	.	+	1	Parent=Os01t0818000-02
Chr01	irgsp1_rep	CDS	34836549	34836670	.	+	2	Parent=Os01t0818000-02
Chr01	irgsp1_rep	CDS	34836812	34837042	.	+	0	Parent=Os01t0818000-02
Chr01	irgsp1_rep	CDS	34837133	34837207	.	+	0	Parent=Os01t0818000-02
Chr01	irgsp1_rep	CDS	34837301	34837401	.	+	0	Parent=Os01t0818000-02
Chr01	irgsp1_rep	CDS	34837520	34837572	.	+	1	Parent=Os01t0818000-02
Chr01	irgsp1_rep	CDS	34837690	34837884	.	+	2	Parent=Os01t0818000-02
Chr01	irgsp1_rep	CDS	34838074	34838195	.	+	2	Parent=Os01t0818000-02
Chr01	irgsp1_rep	three_prime_UTR	34838196	34838210	.	+	.	Parent=Os01t0818000-02
Chr01	irgsp1_rep	three_prime_UTR	34838317	34838427	.	+	.	Parent=Os01t0818000-02
Chr01	irgsp1_rep	three_prime_UTR	34839197	34839504	.	+	.	Parent=Os01t0818000-02
Chr01	irgsp1_rep	mRNA	34842150	34843713	.	+	.	ID=Os01t0818100-00;Name=Os01t0818100-00;Locus_id=Os01g0818100;Note=Hypothetical conserved gene.;Transcript_evidence=CT830790 (DDBJ%2C Best hit);ORF_evidence=Q5QMK9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973);TENOR=Os01t0818100-00;KEGG=Os01t0818100-00
Chr01	irgsp1_rep	five_prime_UTR	34842150	34842170	.	+	.	Parent=Os01t0818100-00
Chr01	irgsp1_rep	CDS	34842171	34842624	.	+	0	Parent=Os01t0818100-00
Chr01	irgsp1_rep	CDS	34843118	34843596	.	+	2	Parent=Os01t0818100-00
Chr01	irgsp1_rep	three_prime_UTR	34843597	34843713	.	+	.	Parent=Os01t0818100-00
Chr01	irgsp1_rep	mRNA	34841616	34845610	.	-	.	ID=Os01t0818200-01;Name=Os01t0818200-01;Locus_id=Os01g0818200;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK288738 (DDBJ%2C Best hit);ORF_evidence=Q94DV3 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J090063N09;TENOR=Os01t0818200-01;KEGG=Os01t0818200-01
Chr01	irgsp1_rep	five_prime_UTR	34845513	34845610	.	-	.	Parent=Os01t0818200-01
Chr01	irgsp1_rep	CDS	34843674	34845512	.	-	0	Parent=Os01t0818200-01
Chr01	irgsp1_rep	three_prime_UTR	34843075	34843673	.	-	.	Parent=Os01t0818200-01
Chr01	irgsp1_rep	three_prime_UTR	34841616	34842589	.	-	.	Parent=Os01t0818200-01
Chr01	irgsp1_rep	mRNA	34841964	34845603	.	-	.	ID=Os01t0818200-02;Name=Os01t0818200-02;Locus_id=Os01g0818200;Note=Hypothetical gene.;Transcript_evidence=AK103555 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033132G14;Expression=AK103555;TENOR=Os01t0818200-02;KEGG=Os01t0818200-02
Chr01	irgsp1_rep	five_prime_UTR	34845602	34845603	.	-	.	Parent=Os01t0818200-02
Chr01	irgsp1_rep	CDS	34845414	34845601	.	-	0	Parent=Os01t0818200-02
Chr01	irgsp1_rep	CDS	34843502	34843583	.	-	1	Parent=Os01t0818200-02
Chr01	irgsp1_rep	three_prime_UTR	34843141	34843501	.	-	.	Parent=Os01t0818200-02
Chr01	irgsp1_rep	three_prime_UTR	34842392	34842589	.	-	.	Parent=Os01t0818200-02
Chr01	irgsp1_rep	three_prime_UTR	34841964	34842286	.	-	.	Parent=Os01t0818200-02
Chr01	irgsp1_rep	mRNA	34852308	34855786	.	+	.	ID=Os01t0818300-01;Name=Os01t0818300-01;Locus_id=Os01g0818300;Note=K Homology domain containing protein.;Transcript_evidence=AK063274 (DDBJ%2C Best hit);ORF_evidence=NP_001148784.1 (RefSeq);GO=Molecular Function: RNA binding (GO:0003723);InterPro=K Homology (IPR004087),K Homology%2C type 1%2C subgroup (IPR018111);NIAS_FLcDNA=001-113-C02;Expression=AK063274;TENOR=Os01t0818300-01;KEGG=Os01t0818300-01
Chr01	irgsp1_rep	five_prime_UTR	34852308	34852574	.	+	.	Parent=Os01t0818300-01
Chr01	irgsp1_rep	CDS	34852575	34852672	.	+	0	Parent=Os01t0818300-01
Chr01	irgsp1_rep	CDS	34852851	34852939	.	+	1	Parent=Os01t0818300-01
Chr01	irgsp1_rep	CDS	34853276	34853427	.	+	2	Parent=Os01t0818300-01
Chr01	irgsp1_rep	CDS	34854214	34854324	.	+	0	Parent=Os01t0818300-01
Chr01	irgsp1_rep	CDS	34854443	34854559	.	+	0	Parent=Os01t0818300-01
Chr01	irgsp1_rep	CDS	34854754	34854897	.	+	0	Parent=Os01t0818300-01
Chr01	irgsp1_rep	CDS	34855304	34855444	.	+	0	Parent=Os01t0818300-01
Chr01	irgsp1_rep	three_prime_UTR	34855445	34855786	.	+	.	Parent=Os01t0818300-01
Chr01	irgsp1_rep	mRNA	34862487	34865889	.	+	.	ID=Os01t0818400-01;Name=Os01t0818400-01;Locus_id=Os01g0818400;CGSNL Gene Symbol=WOX8;CGSNL Gene Name=WUSCHEL-LIKE HOMEOBOX 8;Oryzabase Gene Symbol Synonym(s)=OsWOX8%2C Os WOX8%2C OsWOX13%2C WOX13%2C OsWOX9B;Oryzabase Gene Name Synonym(s)=WUSCHEL-related homeobox 8;Note=Homeodomain-like containing protein.;Transcript_evidence=AK102788 (DDBJ%2C Best hit);ORF_evidence=B7EF33 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);NIAS_FLcDNA=J033107O14;Oryzabase=13225;Expression=AK102788;TENOR=Os01t0818400-01;KEGG=Os01t0818400-01
Chr01	irgsp1_rep	five_prime_UTR	34862487	34863237	.	+	.	Parent=Os01t0818400-01
Chr01	irgsp1_rep	CDS	34863238	34863439	.	+	0	Parent=Os01t0818400-01
Chr01	irgsp1_rep	CDS	34864593	34865111	.	+	2	Parent=Os01t0818400-01
Chr01	irgsp1_rep	CDS	34865195	34865277	.	+	2	Parent=Os01t0818400-01
Chr01	irgsp1_rep	three_prime_UTR	34865278	34865308	.	+	.	Parent=Os01t0818400-01
Chr01	irgsp1_rep	three_prime_UTR	34865707	34865889	.	+	.	Parent=Os01t0818400-01
Chr01	irgsp1_rep	mRNA	34863111	34865404	.	+	.	ID=Os01t0818400-02;Name=Os01t0818400-02;Locus_id=Os01g0818400;CGSNL Gene Symbol=WOX8;CGSNL Gene Name=WUSCHEL-LIKE HOMEOBOX 8;Oryzabase Gene Symbol Synonym(s)=OsWOX8%2C Os WOX8%2C OsWOX13%2C WOX13%2C OsWOX9B;Oryzabase Gene Name Synonym(s)=WUSCHEL-related homeobox 8;Note=Homeodomain-like containing protein.;Transcript_evidence=AK059910 (DDBJ%2C Best hit);ORF_evidence=B7EF33 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);NIAS_FLcDNA=006-209-C10;Oryzabase=13225;Expression=AK059910;TENOR=Os01t0818400-02;KEGG=Os01t0818400-02
Chr01	irgsp1_rep	five_prime_UTR	34863111	34863237	.	+	.	Parent=Os01t0818400-02
Chr01	irgsp1_rep	CDS	34863238	34863439	.	+	0	Parent=Os01t0818400-02
Chr01	irgsp1_rep	CDS	34864593	34865111	.	+	2	Parent=Os01t0818400-02
Chr01	irgsp1_rep	CDS	34865195	34865277	.	+	2	Parent=Os01t0818400-02
Chr01	irgsp1_rep	three_prime_UTR	34865278	34865404	.	+	.	Parent=Os01t0818400-02
Chr01	irgsp1_rep	mRNA	34863202	34865653	.	+	.	ID=Os01t0818400-03;Name=Os01t0818400-03;Locus_id=Os01g0818400;CGSNL Gene Symbol=WOX8;CGSNL Gene Name=WUSCHEL-LIKE HOMEOBOX 8;Oryzabase Gene Symbol Synonym(s)=OsWOX8%2C Os WOX8%2C OsWOX13%2C WOX13%2C OsWOX9B;Oryzabase Gene Name Synonym(s)=WUSCHEL-related homeobox 8;Note=Homeodomain-like containing protein.;Transcript_evidence=AK068585 (DDBJ%2C Best hit);ORF_evidence=Q5QMM3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);NIAS_FLcDNA=J013151P17;Oryzabase=13225;Expression=AK068585;TENOR=Os01t0818400-03;KEGG=Os01t0818400-03
Chr01	irgsp1_rep	five_prime_UTR	34863202	34863237	.	+	.	Parent=Os01t0818400-03
Chr01	irgsp1_rep	CDS	34863238	34863439	.	+	0	Parent=Os01t0818400-03
Chr01	irgsp1_rep	CDS	34864593	34865111	.	+	2	Parent=Os01t0818400-03
Chr01	irgsp1_rep	CDS	34865195	34865277	.	+	2	Parent=Os01t0818400-03
Chr01	irgsp1_rep	three_prime_UTR	34865278	34865653	.	+	.	Parent=Os01t0818400-03
Chr01	irgsp1_rep	mRNA	34868491	34872484	.	-	.	ID=Os01t0818600-01;Name=Os01t0818600-01;Locus_id=Os01g0818600;Note=Similar to Leucine-rich repeat transmembrane protein kinase.;Transcript_evidence=AK070254 (DDBJ%2C Best hit);ORF_evidence=C6FF66 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023043N09;TENOR=Os01t0818600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	34872483	34872484	.	-	.	Parent=Os01t0818600-01
Chr01	irgsp1_rep	CDS	34872134	34872482	.	-	0	Parent=Os01t0818600-01
Chr01	irgsp1_rep	CDS	34870771	34870923	.	-	2	Parent=Os01t0818600-01
Chr01	irgsp1_rep	CDS	34870149	34870435	.	-	2	Parent=Os01t0818600-01
Chr01	irgsp1_rep	CDS	34869933	34869984	.	-	0	Parent=Os01t0818600-01
Chr01	irgsp1_rep	CDS	34869483	34869733	.	-	2	Parent=Os01t0818600-01
Chr01	irgsp1_rep	CDS	34869235	34869369	.	-	0	Parent=Os01t0818600-01
Chr01	irgsp1_rep	CDS	34868746	34869111	.	-	0	Parent=Os01t0818600-01
Chr01	irgsp1_rep	three_prime_UTR	34868491	34868745	.	-	.	Parent=Os01t0818600-01
Chr01	irgsp1_rep	mRNA	34868412	34869689	.	-	.	ID=Os01t0818600-02;Name=Os01t0818600-02;Locus_id=Os01g0818600;Note=Similar to cDNA clone:J013021N20%2C full insert sequence.;Transcript_evidence=AK066883 (DDBJ%2C Best hit);ORF_evidence=B7EP37 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013085B03;Expression=AK066883;TENOR=Os01t0818600-02;KEGG=Os01t0818600-02
Chr01	irgsp1_rep	CDS	34869483	34869689	.	-	0	Parent=Os01t0818600-02
Chr01	irgsp1_rep	CDS	34869235	34869369	.	-	0	Parent=Os01t0818600-02
Chr01	irgsp1_rep	CDS	34868746	34869111	.	-	0	Parent=Os01t0818600-02
Chr01	irgsp1_rep	three_prime_UTR	34868412	34868745	.	-	.	Parent=Os01t0818600-02
Chr01	irgsp1_rep	mRNA	34869233	34870411	.	+	.	ID=Os01t0818650-00;Name=Os01t0818650-00;Locus_id=Os01g0818650;Note=Non-protein coding transcript.;Transcript_evidence=AK368632 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0818650-00
Chr01	irgsp1_rep	exon	34869233	34869363	.	+	.	Parent=Os01t0818650-00
Chr01	irgsp1_rep	exon	34869473	34869735	.	+	.	Parent=Os01t0818650-00
Chr01	irgsp1_rep	exon	34869936	34869986	.	+	.	Parent=Os01t0818650-00
Chr01	irgsp1_rep	exon	34870145	34870411	.	+	.	Parent=Os01t0818650-00
Chr01	irgsp1_rep	mRNA	34873061	34880637	.	-	.	ID=Os01t0818700-01;Name=Os01t0818700-01;Locus_id=Os01g0818700;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=AK066550 (DDBJ%2C Best hit);ORF_evidence=B9ETW6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J013070K21;TENOR=Os01t0818700-01;KEGG=Os01t0818700-01
Chr01	irgsp1_rep	five_prime_UTR	34880486	34880637	.	-	.	Parent=Os01t0818700-01
Chr01	irgsp1_rep	CDS	34880248	34880485	.	-	0	Parent=Os01t0818700-01
Chr01	irgsp1_rep	CDS	34879350	34879451	.	-	2	Parent=Os01t0818700-01
Chr01	irgsp1_rep	CDS	34878424	34878571	.	-	2	Parent=Os01t0818700-01
Chr01	irgsp1_rep	CDS	34877822	34877893	.	-	1	Parent=Os01t0818700-01
Chr01	irgsp1_rep	CDS	34877477	34877548	.	-	1	Parent=Os01t0818700-01
Chr01	irgsp1_rep	CDS	34876405	34876548	.	-	1	Parent=Os01t0818700-01
Chr01	irgsp1_rep	CDS	34876240	34876311	.	-	1	Parent=Os01t0818700-01
Chr01	irgsp1_rep	CDS	34876082	34876153	.	-	1	Parent=Os01t0818700-01
Chr01	irgsp1_rep	CDS	34874227	34874301	.	-	1	Parent=Os01t0818700-01
Chr01	irgsp1_rep	CDS	34873747	34873815	.	-	1	Parent=Os01t0818700-01
Chr01	irgsp1_rep	CDS	34873477	34873545	.	-	1	Parent=Os01t0818700-01
Chr01	irgsp1_rep	CDS	34873324	34873395	.	-	1	Parent=Os01t0818700-01
Chr01	irgsp1_rep	CDS	34873061	34873148	.	-	1	Parent=Os01t0818700-01
Chr01	irgsp1_rep	mRNA	34883015	34884432	.	-	.	ID=Os01t0818800-01;Name=Os01t0818800-01;Locus_id=Os01g0818800;Note=Non-protein coding transcript.;Transcript_evidence=AK106940 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-119-D04;TENOR=Os01t0818800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	exon	34883941	34884432	.	-	.	Parent=Os01t0818800-01
Chr01	irgsp1_rep	exon	34883015	34883440	.	-	.	Parent=Os01t0818800-01
Chr01	irgsp1_rep	mRNA	34885348	34888692	.	-	.	ID=Os01t0818900-01;Name=Os01t0818900-01;Locus_id=Os01g0818900;Note=Conserved hypothetical protein.;Transcript_evidence=AK063195 (DDBJ%2C Best hit);ORF_evidence=B8ABB1 (UniProt);NIAS_FLcDNA=001-112-C02;Expression=AK063195;TENOR=Os01t0818900-01;KEGG=Os01t0818900-01
Chr01	irgsp1_rep	five_prime_UTR	34888647	34888692	.	-	.	Parent=Os01t0818900-01
Chr01	irgsp1_rep	CDS	34888493	34888646	.	-	0	Parent=Os01t0818900-01
Chr01	irgsp1_rep	CDS	34885514	34885623	.	-	2	Parent=Os01t0818900-01
Chr01	irgsp1_rep	three_prime_UTR	34885348	34885513	.	-	.	Parent=Os01t0818900-01
Chr01	irgsp1_rep	mRNA	34888313	34890971	.	+	.	ID=Os01t0819000-01;Name=Os01t0819000-01;Locus_id=Os01g0819000;Note=Similar to transposon protein CACTA%2C En/Spm sub-class.;Transcript_evidence=AK102393 (DDBJ%2C Best hit);ORF_evidence=NP_001147994.1 (RefSeq);NIAS_FLcDNA=J033092F17;TENOR=Os01t0819000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	34888313	34888574	.	+	.	Parent=Os01t0819000-01
Chr01	irgsp1_rep	five_prime_UTR	34888665	34890692	.	+	.	Parent=Os01t0819000-01
Chr01	irgsp1_rep	CDS	34890693	34890971	.	+	0	Parent=Os01t0819000-01
Chr01	irgsp1_rep	mRNA	34888360	34892652	.	+	.	ID=Os01t0819000-02;Name=Os01t0819000-02;Locus_id=Os01g0819000;Note=Similar to transposon protein CACTA%2C En/Spm sub-class.;Transcript_evidence=AK073866 (DDBJ%2C Best hit);ORF_evidence=NP_001147994.1 (RefSeq);NIAS_FLcDNA=J033073L22;Expression=AK073866;TENOR=Os01t0819000-02;KEGG=Os01t0819000-02
Chr01	irgsp1_rep	five_prime_UTR	34888360	34888574	.	+	.	Parent=Os01t0819000-02
Chr01	irgsp1_rep	five_prime_UTR	34888665	34888727	.	+	.	Parent=Os01t0819000-02
Chr01	irgsp1_rep	CDS	34888728	34888774	.	+	0	Parent=Os01t0819000-02
Chr01	irgsp1_rep	CDS	34889673	34889793	.	+	1	Parent=Os01t0819000-02
Chr01	irgsp1_rep	CDS	34890720	34891874	.	+	0	Parent=Os01t0819000-02
Chr01	irgsp1_rep	CDS	34891992	34892408	.	+	0	Parent=Os01t0819000-02
Chr01	irgsp1_rep	three_prime_UTR	34892409	34892652	.	+	.	Parent=Os01t0819000-02
Chr01	irgsp1_rep	mRNA	34899988	34901713	.	+	.	ID=Os01t0819100-01;Name=Os01t0819100-01;Locus_id=Os01g0819100;Note=Similar to predicted protein.;Transcript_evidence=AK242625 (DDBJ%2C Best hit);ORF_evidence=C0LGW1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J090020C16;TENOR=Os01t0819100-01;KEGG=Os01t0819100-01
Chr01	irgsp1_rep	five_prime_UTR	34899988	34899989	.	+	.	Parent=Os01t0819100-01
Chr01	irgsp1_rep	CDS	34899990	34900443	.	+	0	Parent=Os01t0819100-01
Chr01	irgsp1_rep	CDS	34900792	34901417	.	+	2	Parent=Os01t0819100-01
Chr01	irgsp1_rep	three_prime_UTR	34901418	34901713	.	+	.	Parent=Os01t0819100-01
Chr01	irgsp1_rep	mRNA	34903696	34906955	.	-	.	ID=Os01t0819200-00;Name=Os01t0819200-00;Locus_id=Os01g0819200;Note=Similar to calcium lipid binding protein-like.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001152047.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),C2 membrane targeting protein (IPR018029),C2 region (IPR020477);TENOR=Os01t0819200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	34906845	34906955	.	-	0	Parent=Os01t0819200-00
Chr01	irgsp1_rep	CDS	34906331	34906429	.	-	0	Parent=Os01t0819200-00
Chr01	irgsp1_rep	CDS	34906168	34906218	.	-	0	Parent=Os01t0819200-00
Chr01	irgsp1_rep	CDS	34905981	34906104	.	-	0	Parent=Os01t0819200-00
Chr01	irgsp1_rep	CDS	34904603	34904721	.	-	2	Parent=Os01t0819200-00
Chr01	irgsp1_rep	CDS	34904260	34904334	.	-	0	Parent=Os01t0819200-00
Chr01	irgsp1_rep	CDS	34904025	34904101	.	-	0	Parent=Os01t0819200-00
Chr01	irgsp1_rep	CDS	34903696	34903957	.	-	1	Parent=Os01t0819200-00
Chr01	irgsp1_rep	mRNA	34904329	34908517	.	+	.	ID=Os01t0819233-01;Name=Os01t0819233-01;Locus_id=Os01g0819233;Note=Hypothetical gene.;Transcript_evidence=AK288527 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090044J18;TENOR=Os01t0819233-01;KEGG=Os01t0819233-01
Chr01	irgsp1_rep	five_prime_UTR	34904329	34904581	.	+	.	Parent=Os01t0819233-01
Chr01	irgsp1_rep	CDS	34904582	34904842	.	+	0	Parent=Os01t0819233-01
Chr01	irgsp1_rep	three_prime_UTR	34904843	34908517	.	+	.	Parent=Os01t0819233-01
Chr01	irgsp1_rep	mRNA	34904765	34905298	.	-	.	ID=Os01t0819266-00;Name=Os01t0819266-00;Locus_id=Os01g0819266;Note=Non-protein coding transcript.;Transcript_evidence=CT835003 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os01t0819266-00
Chr01	irgsp1_rep	exon	34904765	34905298	.	-	.	Parent=Os01t0819266-00
Chr01	irgsp1_rep	mRNA	34911566	34913753	.	-	.	ID=Os01t0819300-01;Name=Os01t0819300-01;Locus_id=Os01g0819300;CGSNL Gene Symbol=NTMC2T1.3;CGSNL Gene Name=N-TERMINAL-TM-C2 DOMAIN PROTEIN 1.3;Oryzabase Gene Symbol Synonym(s)=OsNTMC2T1.3;Oryzabase Gene Name Synonym(s)=N-terminal-TM-C2 domain protein 1.3%2C N-terminal trans- membrane and C2 domain protein 1.3%2C NTMC2 type 1.3 protein%2C NTMC2 family gene 1.3;Note=Similar to calcium lipid binding protein-like.;Transcript_evidence=AK107799 (DDBJ%2C Best hit);ORF_evidence=NP_001152047.1 (RefSeq);NIAS_FLcDNA=002-133-E01;Oryzabase=22121;TENOR=Os01t0819300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	34913621	34913753	.	-	.	Parent=Os01t0819300-01
Chr01	irgsp1_rep	CDS	34913477	34913620	.	-	0	Parent=Os01t0819300-01
Chr01	irgsp1_rep	CDS	34911884	34911982	.	-	0	Parent=Os01t0819300-01
Chr01	irgsp1_rep	CDS	34911717	34911767	.	-	0	Parent=Os01t0819300-01
Chr01	irgsp1_rep	CDS	34911566	34911616	.	-	0	Parent=Os01t0819300-01
Chr01	irgsp1_rep	mRNA	34917652	34919637	.	+	.	ID=Os01t0819400-00;Name=Os01t0819400-00;Locus_id=Os01g0819400;CGSNL Gene Symbol=UBC23;CGSNL Gene Name=UBIQUITIN-CONJUGATING ENZYME 23;Oryzabase Gene Symbol Synonym(s)=OsUBC23;Oryzabase Gene Name Synonym(s)=Ubiquitin-conjugating enzyme 23;Note=Similar to Ubiquitin carrier protein.;Transcript_evidence=FP101418 (DDBJ);ORF_evidence=B8ABB5 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135),Ubiquitin-conjugating enzyme%2C active site (IPR023313);Oryzabase=19564;TENOR=Os01t0819400-00;KEGG=Os01t0819400-00 (EC:6.3.2.19)
Chr01	irgsp1_rep	CDS	34917652	34917751	.	+	0	Parent=Os01t0819400-00
Chr01	irgsp1_rep	CDS	34918352	34918479	.	+	2	Parent=Os01t0819400-00
Chr01	irgsp1_rep	CDS	34918766	34918870	.	+	0	Parent=Os01t0819400-00
Chr01	irgsp1_rep	CDS	34919266	34919409	.	+	0	Parent=Os01t0819400-00
Chr01	irgsp1_rep	three_prime_UTR	34919410	34919637	.	+	.	Parent=Os01t0819400-00
Chr01	irgsp1_rep	mRNA	34917679	34919410	.	-	.	ID=Os01t0819433-00;Name=Os01t0819433-00;Locus_id=Os01g0819433;Note=Non-protein coding transcript.;Transcript_evidence=BT086907 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0819433-00
Chr01	irgsp1_rep	exon	34919245	34919410	.	-	.	Parent=Os01t0819433-00
Chr01	irgsp1_rep	exon	34918780	34918853	.	-	.	Parent=Os01t0819433-00
Chr01	irgsp1_rep	exon	34918350	34918492	.	-	.	Parent=Os01t0819433-00
Chr01	irgsp1_rep	exon	34917679	34917749	.	-	.	Parent=Os01t0819433-00
Chr01	irgsp1_rep	mRNA	34939026	34941610	.	-	.	ID=Os01t0819466-00;Name=Os01t0819466-00;Locus_id=Os01g0819466;Note=Non-protein coding transcript.;Transcript_evidence=BT086907 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0819466-00
Chr01	irgsp1_rep	exon	34941446	34941610	.	-	.	Parent=Os01t0819466-00
Chr01	irgsp1_rep	exon	34940272	34940357	.	-	.	Parent=Os01t0819466-00
Chr01	irgsp1_rep	exon	34939652	34939794	.	-	.	Parent=Os01t0819466-00
Chr01	irgsp1_rep	exon	34939026	34939096	.	-	.	Parent=Os01t0819466-00
Chr01	irgsp1_rep	mRNA	34941447	34941800	.	+	.	ID=Os01t0819500-01;Name=Os01t0819500-01;Locus_id=Os01g0819500;CGSNL Gene Symbol=UBC22;CGSNL Gene Name=UBIQUITIN-CONJUGATING ENZYME 22;Oryzabase Gene Symbol Synonym(s)=OsUBC22;Oryzabase Gene Name Synonym(s)=Ubiquitin-conjugating enzyme 22;Note=Similar to Ubiquitin-conjugating enzyme E2-17 kDa 11 (EC 6.3.2.19) (Ubiquitin- protein ligase 11) (Ubiquitin carrier protein 11).;Transcript_evidence=AK058360 (DDBJ%2C Best hit);ORF_evidence=B8ABB5 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135);NIAS_FLcDNA=001-014-F04;Oryzabase=19563;Expression=AK058360;TENOR=Os01t0819500-01;KEGG=Os01t0819500-01 (EC:6.3.2.19)
Chr01	irgsp1_rep	five_prime_UTR	34941447	34941448	.	+	.	Parent=Os01t0819500-01
Chr01	irgsp1_rep	CDS	34941449	34941592	.	+	0	Parent=Os01t0819500-01
Chr01	irgsp1_rep	three_prime_UTR	34941593	34941800	.	+	.	Parent=Os01t0819500-01
Chr01	irgsp1_rep	mRNA	34943808	34945708	.	+	.	ID=Os01t0819700-01;Name=Os01t0819700-01;Locus_id=Os01g0819700;Note=Hypothetical conserved gene.;Transcript_evidence=AK059227 (DDBJ%2C Best hit),AK106919 (DDBJ%2C Best hit);ORF_evidence=B9FR70 (UniProt);InterPro=Protein of unknown function DUF3133 (IPR021480);NIAS_FLcDNA=001-024-D10,002-119-B03;TENOR=Os01t0819700-01
Chr01	irgsp1_rep	five_prime_UTR	34943808	34944119	.	+	.	Parent=Os01t0819700-01
Chr01	irgsp1_rep	five_prime_UTR	34944406	34944478	.	+	.	Parent=Os01t0819700-01
Chr01	irgsp1_rep	CDS	34944479	34944596	.	+	0	Parent=Os01t0819700-01
Chr01	irgsp1_rep	CDS	34944700	34945708	.	+	2	Parent=Os01t0819700-01
Chr01	irgsp1_rep	mRNA	34946618	34949027	.	+	.	ID=Os01t0819800-01;Name=Os01t0819800-01;Locus_id=Os01g0819800;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK064921 (DDBJ%2C Best hit);ORF_evidence=Q3LAF9 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013000N08;Expression=AK064921;TENOR=Os01t0819800-01;KEGG=Os01t0819800-01
Chr01	irgsp1_rep	five_prime_UTR	34946618	34946624	.	+	.	Parent=Os01t0819800-01
Chr01	irgsp1_rep	CDS	34946625	34948565	.	+	0	Parent=Os01t0819800-01
Chr01	irgsp1_rep	three_prime_UTR	34948566	34949027	.	+	.	Parent=Os01t0819800-01
Chr01	irgsp1_rep	mRNA	34949168	34959353	.	-	.	ID=Os01t0819900-01;Name=Os01t0819900-01;Locus_id=Os01g0819900;Oryzabase Gene Symbol Synonym(s)=EIP10;Oryzabase Gene Name Synonym(s)=EBR1-interacting protein 10;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK067401 (DDBJ%2C Best hit);ORF_evidence=NP_181605.2 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),Serine/threonine-protein kinase-like domain (IPR017442),HEAT%2C type 2 (IPR021133);NIAS_FLcDNA=J013105B05;Oryzabase=21996;Expression=AK067401;TENOR=Os01t0819900-01;KEGG=Os01t0819900-01
Chr01	irgsp1_rep	five_prime_UTR	34959125	34959353	.	-	.	Parent=Os01t0819900-01
Chr01	irgsp1_rep	CDS	34958999	34959124	.	-	0	Parent=Os01t0819900-01
Chr01	irgsp1_rep	CDS	34957770	34957868	.	-	0	Parent=Os01t0819900-01
Chr01	irgsp1_rep	CDS	34957079	34957230	.	-	0	Parent=Os01t0819900-01
Chr01	irgsp1_rep	CDS	34956713	34956785	.	-	1	Parent=Os01t0819900-01
Chr01	irgsp1_rep	CDS	34956036	34956158	.	-	0	Parent=Os01t0819900-01
Chr01	irgsp1_rep	CDS	34955679	34955787	.	-	0	Parent=Os01t0819900-01
Chr01	irgsp1_rep	CDS	34954965	34955044	.	-	2	Parent=Os01t0819900-01
Chr01	irgsp1_rep	CDS	34954703	34954784	.	-	0	Parent=Os01t0819900-01
Chr01	irgsp1_rep	CDS	34954390	34954529	.	-	2	Parent=Os01t0819900-01
Chr01	irgsp1_rep	CDS	34954198	34954308	.	-	0	Parent=Os01t0819900-01
Chr01	irgsp1_rep	CDS	34953979	34954095	.	-	0	Parent=Os01t0819900-01
Chr01	irgsp1_rep	CDS	34953808	34953897	.	-	0	Parent=Os01t0819900-01
Chr01	irgsp1_rep	CDS	34953492	34953545	.	-	0	Parent=Os01t0819900-01
Chr01	irgsp1_rep	CDS	34953313	34953387	.	-	0	Parent=Os01t0819900-01
Chr01	irgsp1_rep	CDS	34952786	34952861	.	-	0	Parent=Os01t0819900-01
Chr01	irgsp1_rep	CDS	34952589	34952688	.	-	2	Parent=Os01t0819900-01
Chr01	irgsp1_rep	CDS	34951978	34952047	.	-	1	Parent=Os01t0819900-01
Chr01	irgsp1_rep	CDS	34951439	34951512	.	-	0	Parent=Os01t0819900-01
Chr01	irgsp1_rep	CDS	34950257	34950366	.	-	1	Parent=Os01t0819900-01
Chr01	irgsp1_rep	CDS	34949823	34950071	.	-	2	Parent=Os01t0819900-01
Chr01	irgsp1_rep	CDS	34949349	34949716	.	-	2	Parent=Os01t0819900-01
Chr01	irgsp1_rep	three_prime_UTR	34949168	34949348	.	-	.	Parent=Os01t0819900-01
Chr01	irgsp1_rep	mRNA	34953513	34959311	.	-	.	ID=Os01t0819900-02;Name=Os01t0819900-02;Locus_id=Os01g0819900;Oryzabase Gene Symbol Synonym(s)=EIP10;Oryzabase Gene Name Synonym(s)=EBR1-interacting protein 10;Note=Similar to HEAT repeat-containing protein.;Transcript_evidence=AK101811 (DDBJ%2C Best hit);ORF_evidence=XP_002881735.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),Serine/threonine-protein kinase-like domain (IPR017442),HEAT%2C type 2 (IPR021133);NIAS_FLcDNA=J033066M22;Oryzabase=21996;Expression=AK101811;TENOR=Os01t0819900-02;KEGG=Os01t0819900-02
Chr01	irgsp1_rep	five_prime_UTR	34959125	34959311	.	-	.	Parent=Os01t0819900-02
Chr01	irgsp1_rep	CDS	34958999	34959124	.	-	0	Parent=Os01t0819900-02
Chr01	irgsp1_rep	CDS	34957770	34957868	.	-	0	Parent=Os01t0819900-02
Chr01	irgsp1_rep	CDS	34957079	34957230	.	-	0	Parent=Os01t0819900-02
Chr01	irgsp1_rep	CDS	34956713	34956785	.	-	1	Parent=Os01t0819900-02
Chr01	irgsp1_rep	CDS	34956036	34956158	.	-	0	Parent=Os01t0819900-02
Chr01	irgsp1_rep	CDS	34955679	34955787	.	-	0	Parent=Os01t0819900-02
Chr01	irgsp1_rep	CDS	34954965	34955044	.	-	2	Parent=Os01t0819900-02
Chr01	irgsp1_rep	CDS	34954703	34954784	.	-	0	Parent=Os01t0819900-02
Chr01	irgsp1_rep	CDS	34954390	34954529	.	-	2	Parent=Os01t0819900-02
Chr01	irgsp1_rep	CDS	34954198	34954308	.	-	0	Parent=Os01t0819900-02
Chr01	irgsp1_rep	CDS	34953979	34954095	.	-	0	Parent=Os01t0819900-02
Chr01	irgsp1_rep	CDS	34953781	34953897	.	-	0	Parent=Os01t0819900-02
Chr01	irgsp1_rep	three_prime_UTR	34953513	34953780	.	-	.	Parent=Os01t0819900-02
Chr01	irgsp1_rep	mRNA	34961974	34963697	.	-	.	ID=Os01t0820000-00;Name=Os01t0820000-00;Locus_id=Os01g0820000;Note=Similar to Cinnamate-4-hydroxylase.;Transcript_evidence=AK250541 (DDBJ);ORF_evidence=D2K8K9 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);TENOR=Os01t0820000-00;KEGG=Os01t0820000-00 (EC:1.14.13.11)
Chr01	irgsp1_rep	CDS	34962883	34963697	.	-	0	Parent=Os01t0820000-00
Chr01	irgsp1_rep	CDS	34962653	34962786	.	-	1	Parent=Os01t0820000-00
Chr01	irgsp1_rep	CDS	34962524	34962576	.	-	2	Parent=Os01t0820000-00
Chr01	irgsp1_rep	three_prime_UTR	34961974	34962523	.	-	.	Parent=Os01t0820000-00
Chr01	irgsp1_rep	mRNA	34962064	34963618	.	+	.	ID=Os01t0820050-00;Name=Os01t0820050-00;Locus_id=Os01g0820050;Note=Hypothetical protein.;Transcript_evidence=EU958027 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0820050-00
Chr01	irgsp1_rep	five_prime_UTR	34962064	34962758	.	+	.	Parent=Os01t0820050-00
Chr01	irgsp1_rep	five_prime_UTR	34962859	34962866	.	+	.	Parent=Os01t0820050-00
Chr01	irgsp1_rep	CDS	34962867	34963618	.	+	0	Parent=Os01t0820050-00
Chr01	irgsp1_rep	mRNA	34981468	34985447	.	+	.	ID=Os01t0820400-01;Name=Os01t0820400-01;Locus_id=Os01g0820400;RAP-DB Gene Symbol Synonym(s)=OsWRKY22%2C WRKY22;RAP-DB Gene Name Synonym(s)=Rice WRKY gene22%2C WRKY GENE 22;CGSNL Gene Symbol=WRKY22;CGSNL Gene Name=WRKY GENE 22;Oryzabase Gene Symbol Synonym(s)=OsWRKY22;Oryzabase Gene Name Synonym(s)=Rice WRKY gene22;Note=WRKY transcription factor 22%2C Resistance to blast;Transcript_evidence=BK005025;ORF_evidence=Q8SA13;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=WRKY domain (IPR003657);Manual Curation=April 25%2C 2017;Literature_PMID=22443363,15047897,Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6534;TENOR=Os01t0820400-00;KEGG=Os01t0820400-00
Chr01	irgsp1_rep	CDS	34981468	34981574	.	+	0	Parent=Os01t0820400-01
Chr01	irgsp1_rep	CDS	34981851	34981958	.	+	1	Parent=Os01t0820400-01
Chr01	irgsp1_rep	CDS	34984865	34985447	.	+	1	Parent=Os01t0820400-01
Chr01	irgsp1_rep	mRNA	34996792	35003226	.	+	.	ID=Os01t0820700-00;Name=Os01t0820700-00;Locus_id=Os01g0820700;CGSNL Gene Symbol=WRKY116;CGSNL Gene Name=WRKY GENE 116;Oryzabase Gene Symbol Synonym(s)=OsWRKY116;Note=DNA-binding WRKY domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5QMC1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=9207;TENOR=Os01t0820700-00
Chr01	irgsp1_rep	CDS	34996792	34996955	.	+	0	Parent=Os01t0820700-00
Chr01	irgsp1_rep	CDS	35001792	35001896	.	+	1	Parent=Os01t0820700-00
Chr01	irgsp1_rep	CDS	35002644	35003226	.	+	1	Parent=Os01t0820700-00
Chr01	irgsp1_rep	mRNA	34996867	34999374	.	-	.	ID=Os01t0820750-01;Name=Os01t0820750-01;Locus_id=Os01g0820750;Note=Non-protein coding transcript.;Transcript_evidence=AK288586 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090050A09;TENOR=Os01t0820750-01
Chr01	irgsp1_rep	exon	34996867	34999374	.	-	.	Parent=Os01t0820750-01
Chr01	irgsp1_rep	mRNA	35003830	35005603	.	-	.	ID=Os01t0820800-01;Name=Os01t0820800-01;Locus_id=Os01g0820800;Note=Conserved hypothetical protein.;Transcript_evidence=AK106944 (DDBJ%2C Best hit);ORF_evidence=A2ZZ19 (UniProt);NIAS_FLcDNA=002-119-D09;TENOR=Os01t0820800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	35005362	35005603	.	-	.	Parent=Os01t0820800-01
Chr01	irgsp1_rep	CDS	35005143	35005361	.	-	0	Parent=Os01t0820800-01
Chr01	irgsp1_rep	three_prime_UTR	35004711	35005142	.	-	.	Parent=Os01t0820800-01
Chr01	irgsp1_rep	three_prime_UTR	35003830	35004219	.	-	.	Parent=Os01t0820800-01
Chr01	irgsp1_rep	mRNA	35032858	35035321	.	-	.	ID=Os01t0821300-01;Name=Os01t0821300-01;Locus_id=Os01g0821300;RAP-DB Gene Symbol Synonym(s)=OsWRKY108;RAP-DB Gene Name Synonym(s)=WRKY GENE 108;CGSNL Gene Symbol=WRKY108;CGSNL Gene Name=WRKY GENE 108;Oryzabase Gene Symbol Synonym(s)=OsWRKY108;Note=WRKY transcription factor%2C Promotion of phosphate accumulation under Pi-replete conditions;Transcript_evidence=AK289250 (truncated),Inferred from literature;ORF_evidence=Q8RUJ6;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA-binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=WRKY domain superfamily (IPR036576),WRKY domain (IPR003657);NIAS_FLcDNA=J100080M05 (truncated);Manual Curation=September 23%2C 2020;Literature_PMID=32936937,Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=9208;TENOR=Os01t0821300-01;KEGG=Os01t0821300-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	35035241	35035321	.	-	.	Parent=Os01t0821300-01
Chr01	irgsp1_rep	CDS	35034861	35035240	.	-	0	Parent=Os01t0821300-01
Chr01	irgsp1_rep	CDS	35034594	35034680	.	-	1	Parent=Os01t0821300-01
Chr01	irgsp1_rep	CDS	35033086	35033695	.	-	1	Parent=Os01t0821300-01
Chr01	irgsp1_rep	three_prime_UTR	35032858	35033085	.	-	.	Parent=Os01t0821300-01
Chr01	irgsp1_rep	mRNA	35062738	35064472	.	+	.	ID=Os01t0821600-01;Name=Os01t0821600-01;Locus_id=Os01g0821600;RAP-DB Gene Symbol Synonym(s)=OsWRKY21;RAP-DB Gene Name Synonym(s)=RICE WRKY GENE21;CGSNL Gene Symbol=WRKY21;CGSNL Gene Name=RICE WRKY GENE21;Oryzabase Gene Symbol Synonym(s)=OsWRKY21;Oryzabase Gene Name Synonym(s)=Rice WRKY gene21;Note=WRKY transcription factor%2C Promotion of phosphate accumulation under Pi-replete conditions;Transcript_evidence=AK108657;ORF_evidence=Q8RV01;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA-binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=WRKY domain superfamily (IPR036576),WRKY domain (IPR003657);NIAS_FLcDNA=002-148-E07;Manual Curation=September 23%2C 2020;Literature_PMID=32936937,Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6533;Expression=AK108657;TENOR=Os01t0821600-01;KEGG=Os01t0821600-01;Subcellular location=nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	35062738	35062798	.	+	.	Parent=Os01t0821600-01
Chr01	irgsp1_rep	CDS	35062799	35063088	.	+	0	Parent=Os01t0821600-01
Chr01	irgsp1_rep	CDS	35063303	35063855	.	+	1	Parent=Os01t0821600-01
Chr01	irgsp1_rep	three_prime_UTR	35063856	35064472	.	+	.	Parent=Os01t0821600-01
Chr01	irgsp1_rep	mRNA	35064445	35068207	.	-	.	ID=Os01t0821700-01;Name=Os01t0821700-01;Locus_id=Os01g0821700;Note=Similar to Chitin-binding lectin 1 precursor (PL-I).;Transcript_evidence=AK060539 (DDBJ%2C Best hit);ORF_evidence=B6T812 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Uncharacterised protein family UPF0136%2C Transmembrane (IPR005349);NIAS_FLcDNA=001-021-E03;Expression=AK060539;TENOR=Os01t0821700-01;KEGG=Os01t0821700-01
Chr01	irgsp1_rep	five_prime_UTR	35068047	35068207	.	-	.	Parent=Os01t0821700-01
Chr01	irgsp1_rep	CDS	35067789	35068046	.	-	0	Parent=Os01t0821700-01
Chr01	irgsp1_rep	CDS	35066944	35067331	.	-	0	Parent=Os01t0821700-01
Chr01	irgsp1_rep	CDS	35066590	35066760	.	-	2	Parent=Os01t0821700-01
Chr01	irgsp1_rep	CDS	35066192	35066238	.	-	2	Parent=Os01t0821700-01
Chr01	irgsp1_rep	CDS	35066045	35066082	.	-	0	Parent=Os01t0821700-01
Chr01	irgsp1_rep	CDS	35065001	35065085	.	-	1	Parent=Os01t0821700-01
Chr01	irgsp1_rep	three_prime_UTR	35064999	35065000	.	-	.	Parent=Os01t0821700-01
Chr01	irgsp1_rep	three_prime_UTR	35064445	35064824	.	-	.	Parent=Os01t0821700-01
Chr01	irgsp1_rep	mRNA	35069283	35074488	.	-	.	ID=Os01t0821800-01;Name=Os01t0821800-01;Locus_id=Os01g0821800;CGSNL Gene Symbol=ARC;Oryzabase Gene Symbol Synonym(s)=OsARC;Note=Nucleic acid-binding%2C OB-fold-like domain containing protein.;Transcript_evidence=AK119168 (DDBJ%2C Best hit);ORF_evidence=B6T3D4 (UniProt);GO=Molecular Function: tRNA binding (GO:0000049);InterPro=tRNA-binding domain (IPR002547),Glutathione S-transferase%2C C-terminal-like (IPR010987),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=001-036-F11;Oryzabase=22419;Expression=AK119168;TENOR=Os01t0821800-01;KEGG=Os01t0821800-01
Chr01	irgsp1_rep	five_prime_UTR	35074442	35074488	.	-	.	Parent=Os01t0821800-01
Chr01	irgsp1_rep	CDS	35074361	35074441	.	-	0	Parent=Os01t0821800-01
Chr01	irgsp1_rep	CDS	35073322	35073402	.	-	0	Parent=Os01t0821800-01
Chr01	irgsp1_rep	CDS	35073076	35073246	.	-	0	Parent=Os01t0821800-01
Chr01	irgsp1_rep	CDS	35072913	35072978	.	-	0	Parent=Os01t0821800-01
Chr01	irgsp1_rep	CDS	35072324	35072392	.	-	0	Parent=Os01t0821800-01
Chr01	irgsp1_rep	CDS	35071805	35071921	.	-	0	Parent=Os01t0821800-01
Chr01	irgsp1_rep	CDS	35071250	35071473	.	-	0	Parent=Os01t0821800-01
Chr01	irgsp1_rep	CDS	35071063	35071153	.	-	1	Parent=Os01t0821800-01
Chr01	irgsp1_rep	CDS	35070878	35070946	.	-	0	Parent=Os01t0821800-01
Chr01	irgsp1_rep	CDS	35070388	35070479	.	-	0	Parent=Os01t0821800-01
Chr01	irgsp1_rep	CDS	35069906	35069969	.	-	1	Parent=Os01t0821800-01
Chr01	irgsp1_rep	CDS	35069507	35069611	.	-	0	Parent=Os01t0821800-01
Chr01	irgsp1_rep	three_prime_UTR	35069283	35069506	.	-	.	Parent=Os01t0821800-01
Chr01	irgsp1_rep	mRNA	35071805	35074481	.	-	.	ID=Os01t0821800-02;Name=Os01t0821800-02;Locus_id=Os01g0821800;CGSNL Gene Symbol=ARC;Oryzabase Gene Symbol Synonym(s)=OsARC;Note=Similar to methionyl-tRNA synthetase.;Transcript_evidence=AK073951 (DDBJ%2C Best hit);ORF_evidence=B6T3D4 (UniProt);InterPro=Glutathione S-transferase%2C C-terminal-like (IPR010987),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=J033075A05;Oryzabase=22419;Expression=AK073951;TENOR=Os01t0821800-02;KEGG=Os01t0821800-02
Chr01	irgsp1_rep	five_prime_UTR	35074442	35074481	.	-	.	Parent=Os01t0821800-02
Chr01	irgsp1_rep	CDS	35074361	35074441	.	-	0	Parent=Os01t0821800-02
Chr01	irgsp1_rep	CDS	35073322	35073402	.	-	0	Parent=Os01t0821800-02
Chr01	irgsp1_rep	CDS	35073076	35073246	.	-	0	Parent=Os01t0821800-02
Chr01	irgsp1_rep	CDS	35072913	35072978	.	-	0	Parent=Os01t0821800-02
Chr01	irgsp1_rep	CDS	35072324	35072392	.	-	0	Parent=Os01t0821800-02
Chr01	irgsp1_rep	CDS	35071805	35071921	.	-	0	Parent=Os01t0821800-02
Chr01	irgsp1_rep	mRNA	35069269	35074465	.	-	.	ID=Os01t0821800-03;Name=Os01t0821800-03;Locus_id=Os01g0821800;CGSNL Gene Symbol=ARC;Oryzabase Gene Symbol Synonym(s)=OsARC;Note=Nucleic acid-binding%2C OB-fold-like domain containing protein.;Transcript_evidence=AK103171 (DDBJ%2C Best hit);ORF_evidence=B6T3D4 (UniProt);GO=Molecular Function: tRNA binding (GO:0000049);InterPro=tRNA-binding domain (IPR002547),Glutathione S-transferase%2C C-terminal-like (IPR010987),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=J033121G11;Oryzabase=22419;TENOR=Os01t0821800-03
Chr01	irgsp1_rep	five_prime_UTR	35074442	35074465	.	-	.	Parent=Os01t0821800-03
Chr01	irgsp1_rep	CDS	35074361	35074441	.	-	0	Parent=Os01t0821800-03
Chr01	irgsp1_rep	CDS	35073322	35073402	.	-	0	Parent=Os01t0821800-03
Chr01	irgsp1_rep	CDS	35073076	35073246	.	-	0	Parent=Os01t0821800-03
Chr01	irgsp1_rep	CDS	35072913	35072978	.	-	0	Parent=Os01t0821800-03
Chr01	irgsp1_rep	CDS	35072324	35072392	.	-	0	Parent=Os01t0821800-03
Chr01	irgsp1_rep	CDS	35071805	35071921	.	-	0	Parent=Os01t0821800-03
Chr01	irgsp1_rep	CDS	35071250	35071473	.	-	0	Parent=Os01t0821800-03
Chr01	irgsp1_rep	CDS	35071063	35071153	.	-	1	Parent=Os01t0821800-03
Chr01	irgsp1_rep	CDS	35070878	35070946	.	-	0	Parent=Os01t0821800-03
Chr01	irgsp1_rep	CDS	35070388	35070479	.	-	0	Parent=Os01t0821800-03
Chr01	irgsp1_rep	CDS	35069906	35069969	.	-	1	Parent=Os01t0821800-03
Chr01	irgsp1_rep	CDS	35069507	35069611	.	-	0	Parent=Os01t0821800-03
Chr01	irgsp1_rep	three_prime_UTR	35069269	35069506	.	-	.	Parent=Os01t0821800-03
Chr01	irgsp1_rep	mRNA	35082084	35085074	.	-	.	ID=Os01t0821900-01;Name=Os01t0821900-01;Locus_id=Os01g0821900;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK105103 (DDBJ%2C Best hit);ORF_evidence=Q8RUT5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-100-D09;Expression=AK105103;TENOR=Os01t0821900-01;KEGG=Os01t0821900-01
Chr01	irgsp1_rep	five_prime_UTR	35085073	35085074	.	-	.	Parent=Os01t0821900-01
Chr01	irgsp1_rep	CDS	35084207	35085072	.	-	0	Parent=Os01t0821900-01
Chr01	irgsp1_rep	CDS	35082273	35083734	.	-	1	Parent=Os01t0821900-01
Chr01	irgsp1_rep	three_prime_UTR	35082084	35082272	.	-	.	Parent=Os01t0821900-01
Chr01	irgsp1_rep	mRNA	35094186	35094930	.	-	.	ID=Os01t0822001-01;Name=Os01t0822001-01;Locus_id=Os01g0822001;Note=Hypothetical gene.;Transcript_evidence=AK289188 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100037F09;TENOR=Os01t0822001-01;KEGG=Os01t0822001-01
Chr01	irgsp1_rep	five_prime_UTR	35094929	35094930	.	-	.	Parent=Os01t0822001-01
Chr01	irgsp1_rep	CDS	35094464	35094928	.	-	0	Parent=Os01t0822001-01
Chr01	irgsp1_rep	three_prime_UTR	35094186	35094463	.	-	.	Parent=Os01t0822001-01
Chr01	irgsp1_rep	mRNA	35096177	35100619	.	-	.	ID=Os01t0822200-01;Name=Os01t0822200-01;Locus_id=Os01g0822200;CGSNL Gene Symbol=RLCK47;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 47;Oryzabase Gene Symbol Synonym(s)=OsRLCK47;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 47;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK103249 (DDBJ%2C Best hit);ORF_evidence=NP_001147286.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033123M05;Oryzabase=18764;Expression=AK103249;TENOR=Os01t0822200-01;KEGG=Os01t0822200-01
Chr01	irgsp1_rep	five_prime_UTR	35100419	35100619	.	-	.	Parent=Os01t0822200-01
Chr01	irgsp1_rep	five_prime_UTR	35099308	35099328	.	-	.	Parent=Os01t0822200-01
Chr01	irgsp1_rep	CDS	35098675	35099307	.	-	0	Parent=Os01t0822200-01
Chr01	irgsp1_rep	CDS	35097592	35097849	.	-	0	Parent=Os01t0822200-01
Chr01	irgsp1_rep	CDS	35097337	35097456	.	-	0	Parent=Os01t0822200-01
Chr01	irgsp1_rep	CDS	35096460	35097077	.	-	0	Parent=Os01t0822200-01
Chr01	irgsp1_rep	three_prime_UTR	35096177	35096459	.	-	.	Parent=Os01t0822200-01
Chr01	irgsp1_rep	mRNA	35115261	35115959	.	-	.	ID=Os01t0822501-01;Name=Os01t0822501-01;Locus_id=Os01g0822501;Note=Conserved hypothetical protein.;Transcript_evidence=AK288168 (DDBJ%2C Best hit);ORF_evidence=NP_001067531.1 (RefSeq);NIAS_FLcDNA=J090002L08;TENOR=Os01t0822501-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	35115595	35115959	.	-	.	Parent=Os01t0822501-01
Chr01	irgsp1_rep	CDS	35115382	35115594	.	-	0	Parent=Os01t0822501-01
Chr01	irgsp1_rep	three_prime_UTR	35115261	35115381	.	-	.	Parent=Os01t0822501-01
Chr01	irgsp1_rep	mRNA	35121625	35122986	.	-	.	ID=Os01t0822800-01;Name=Os01t0822800-01;Locus_id=Os01g0822800;Note=Similar to RING-H2 finger protein ATL3C.;Transcript_evidence=AK065060 (DDBJ%2C Best hit);ORF_evidence=NP_001151367.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J013001J11;Expression=AK065060;TENOR=Os01t0822800-01;KEGG=Os01t0822800-01
Chr01	irgsp1_rep	five_prime_UTR	35122722	35122986	.	-	.	Parent=Os01t0822800-01
Chr01	irgsp1_rep	five_prime_UTR	35122616	35122652	.	-	.	Parent=Os01t0822800-01
Chr01	irgsp1_rep	CDS	35121989	35122615	.	-	0	Parent=Os01t0822800-01
Chr01	irgsp1_rep	three_prime_UTR	35121625	35121988	.	-	.	Parent=Os01t0822800-01
Chr01	irgsp1_rep	mRNA	35130013	35130913	.	-	.	ID=Os01t0822900-03;Name=Os01t0822900-03;Locus_id=Os01g0822900;RAP-DB Gene Symbol Synonym(s)=PTD1%2C Psd1;RAP-DB Gene Name Synonym(s)=Photoperiod-thermo-sensitive dwarfism 1%2C Photoperiod-sensitive dwarf 1;CGSNL Gene Symbol=PTD1;CGSNL Gene Name=PHOTOPERIOD-THERMO-SENSITIVE DWARFISM 1;Oryzabase Gene Symbol Synonym(s)=OsLTP1.2%2C OsLtpI.2%2C OsPTD1%2C Psd1;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein 1.2%2C lipid transfer protein 1.2%2C type 1 non-specific lipid transfer protein 2%2C Photoperiod-thermo-sensitive dwarfism 1%2C Photoperiod-sensitive dwarf 1;Note=Non-specific lipid transfer protein (nsLTP)%2C Regulation of plant height;Transcript_evidence=AK120044,AK071598,AK104079,AK119174,AK119258,AK119732;ORF_evidence=Q5QM60;GO=Biological Process: lipid transport (GO:0006869),Molecular Function: lipid binding (GO:0008289);InterPro=Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily (IPR036312),Plant lipid transfer protein/Par allergen (IPR000528),Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain (IPR016140);NIAS_FLcDNA=002-188-F08,J023107C11,001-028-G08,001-037-F03,001-125-H04,002-158-A02;Manual Curation=July 9%2C 2020;Literature_PMID=31701134,24158250;Oryzabase=13511;TENOR=Os01t0822900-03;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	35130816	35130913	.	-	.	Parent=Os01t0822900-03
Chr01	irgsp1_rep	CDS	35130463	35130815	.	-	0	Parent=Os01t0822900-03
Chr01	irgsp1_rep	CDS	35130367	35130376	.	-	1	Parent=Os01t0822900-03
Chr01	irgsp1_rep	three_prime_UTR	35130013	35130366	.	-	.	Parent=Os01t0822900-03
Chr01	irgsp1_rep	mRNA	35130020	35130376	.	-	.	ID=Os01t0822900-04;Name=Os01t0822900-04;Locus_id=Os01g0822900;CGSNL Gene Symbol=PTD1;CGSNL Gene Name=PHOTOPERIOD-THERMO-SENSITIVE DWARFISM 1;Oryzabase Gene Symbol Synonym(s)=OsLTP1.2%2C OsLtpI.2%2C OsPTD1%2C Psd1;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein 1.2%2C lipid transfer protein 1.2%2C type 1 non-specific lipid transfer protein 2%2C Photoperiod-thermo-sensitive dwarfism 1%2C Photoperiod-sensitive dwarf 1;Note=Non-protein coding transcript.;Transcript_evidence=AK058275 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-013-C04;Oryzabase=13511;TENOR=Os01t0822900-04
Chr01	irgsp1_rep	exon	35130020	35130376	.	-	.	Parent=Os01t0822900-04
Chr01	irgsp1_rep	mRNA	35145517	35147323	.	+	.	ID=Os01t0823100-01;Name=Os01t0823100-01;Locus_id=Os01g0823100;CGSNL Gene Symbol=EXPA2;CGSNL Gene Name=ALPHA-EXPANSIN 2;Oryzabase Gene Symbol Synonym(s)=OsEXP2%2C OsEXP2(Os-EXP2)%2C Os-EXP2%2C EXPA2%2C OsEXPA2%2C OsaEXPa1.23%2C RiExB%2C RiExC%2C Os-EXPA2;Oryzabase Gene Name Synonym(s)=Rice expansin-2%2C Expansin-A2%2C Alpha-expansin-2;Note=Alpha-expansin OsEXPA2.;Transcript_evidence=AK070463 (DDBJ%2C Best hit);ORF_evidence=Q40636 (UniProt);GO=Biological Process: plant-type cell wall organization (GO:0009664),Cellular Component: extracellular region (GO:0005576);InterPro=Expansin (IPR002963),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);NIAS_FLcDNA=J023048M24;Oryzabase=2965;Expression=AK070463;TENOR=Os01t0823100-01;KEGG=Os01t0823100-01
Chr01	irgsp1_rep	five_prime_UTR	35145517	35145611	.	+	.	Parent=Os01t0823100-01
Chr01	irgsp1_rep	CDS	35145612	35145750	.	+	0	Parent=Os01t0823100-01
Chr01	irgsp1_rep	CDS	35145858	35146170	.	+	2	Parent=Os01t0823100-01
Chr01	irgsp1_rep	CDS	35146532	35146835	.	+	1	Parent=Os01t0823100-01
Chr01	irgsp1_rep	three_prime_UTR	35146836	35147323	.	+	.	Parent=Os01t0823100-01
Chr01	irgsp1_rep	mRNA	35145898	35146832	.	-	.	ID=Os01t0823150-00;Name=Os01t0823150-00;Locus_id=Os01g0823150;Note=Hypothetical gene.;Transcript_evidence=BT016845 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0823150-00
Chr01	irgsp1_rep	CDS	35146527	35146832	.	-	0	Parent=Os01t0823150-00
Chr01	irgsp1_rep	CDS	35145898	35146165	.	-	0	Parent=Os01t0823150-00
Chr01	irgsp1_rep	mRNA	35148704	35153068	.	+	.	ID=Os01t0823200-01;Name=Os01t0823200-01;Locus_id=Os01g0823200;Note=Similar to Integral membrane protein like.;Transcript_evidence=AK066097 (DDBJ%2C Best hit);ORF_evidence=B4G114 (UniProt);NIAS_FLcDNA=J013056K15;Expression=AK066097;TENOR=Os01t0823200-01;KEGG=Os01t0823200-01
Chr01	irgsp1_rep	five_prime_UTR	35148704	35148749	.	+	.	Parent=Os01t0823200-01
Chr01	irgsp1_rep	CDS	35148750	35148864	.	+	0	Parent=Os01t0823200-01
Chr01	irgsp1_rep	CDS	35150467	35150651	.	+	2	Parent=Os01t0823200-01
Chr01	irgsp1_rep	CDS	35150982	35151049	.	+	0	Parent=Os01t0823200-01
Chr01	irgsp1_rep	CDS	35151303	35151483	.	+	1	Parent=Os01t0823200-01
Chr01	irgsp1_rep	three_prime_UTR	35151484	35153068	.	+	.	Parent=Os01t0823200-01
Chr01	irgsp1_rep	mRNA	35153705	35155694	.	+	.	ID=Os01t0823300-00;Name=Os01t0823300-00;Locus_id=Os01g0823300;CGSNL Gene Symbol=RPS26;CGSNL Gene Name=RIBOSOMAL PROTEIN S26;Oryzabase Gene Symbol Synonym(s)=OsRPS26;Oryzabase Gene Name Synonym(s)=ribosomal protein S26%2C ribosomal protein small subunit 26;Note=Similar to Ribosomal protein S26.;Transcript_evidence=CU861699 (DDBJ%2C Best hit);ORF_evidence=A2Y5R4 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S26e (IPR000892);Oryzabase=22186;TENOR=Os01t0823300-00;KEGG=Os01t0823300-00
Chr01	irgsp1_rep	five_prime_UTR	35153705	35153776	.	+	.	Parent=Os01t0823300-00
Chr01	irgsp1_rep	CDS	35153777	35153779	.	+	0	Parent=Os01t0823300-00
Chr01	irgsp1_rep	CDS	35153869	35153961	.	+	0	Parent=Os01t0823300-00
Chr01	irgsp1_rep	CDS	35154063	35154147	.	+	0	Parent=Os01t0823300-00
Chr01	irgsp1_rep	CDS	35154329	35154459	.	+	2	Parent=Os01t0823300-00
Chr01	irgsp1_rep	CDS	35155445	35155534	.	+	0	Parent=Os01t0823300-00
Chr01	irgsp1_rep	three_prime_UTR	35155535	35155694	.	+	.	Parent=Os01t0823300-00
Chr01	irgsp1_rep	mRNA	35156414	35159205	.	+	.	ID=Os01t0823400-01;Name=Os01t0823400-01;Locus_id=Os01g0823400;Note=Hypothetical conserved gene.;Transcript_evidence=AK288005 (DDBJ%2C Best hit);ORF_evidence=NP_001044659.2 (RefSeq);NIAS_FLcDNA=J075111E20;TENOR=Os01t0823400-01;KEGG=Os01t0823400-01
Chr01	irgsp1_rep	five_prime_UTR	35156414	35156440	.	+	.	Parent=Os01t0823400-01
Chr01	irgsp1_rep	CDS	35156441	35156979	.	+	0	Parent=Os01t0823400-01
Chr01	irgsp1_rep	CDS	35157805	35158126	.	+	1	Parent=Os01t0823400-01
Chr01	irgsp1_rep	CDS	35158549	35158779	.	+	0	Parent=Os01t0823400-01
Chr01	irgsp1_rep	three_prime_UTR	35158780	35159205	.	+	.	Parent=Os01t0823400-01
Chr01	irgsp1_rep	mRNA	35167601	35169129	.	-	.	ID=Os01t0823500-01;Name=Os01t0823500-01;Locus_id=Os01g0823500;RAP-DB Gene Symbol Synonym(s)=OsOFP6;RAP-DB Gene Name Synonym(s)=OVATE family protein 6;Oryzabase Gene Symbol Synonym(s)=OsOFP4%2C OFP4%2C OsOFP06%2C OsOFP6%2C OFP6;Oryzabase Gene Name Synonym(s)=OVATE family protein 4%2C ovate family protein 6%2C OVATE-domain containing protein 6;Note=OVATE family protein%2C Regulation of growth and development%2C Resistance to drought and cold stresses;Transcript_evidence=AK064237;ORF_evidence=Q5JN79;GO=Molecular Function: DNA binding (GO:0003677);InterPro=DNA-binding domain%2C ovate family-like (IPR025830),Ovate  protein family%2C C-terminal (IPR006458);NIAS_FLcDNA=002-105-A08;Manual Curation=February 18%2C 2019;Literature_PMID=29048565,25760462;Oryzabase=18300;Expression=AK064237;TENOR=Os01t0823500-01;KEGG=Os01t0823500-01;Subcellular location=nucleus (GO:0005634), endoplasmic reticulum (GO:0005783)
Chr01	irgsp1_rep	five_prime_UTR	35169110	35169129	.	-	.	Parent=Os01t0823500-01
Chr01	irgsp1_rep	CDS	35167970	35169109	.	-	0	Parent=Os01t0823500-01
Chr01	irgsp1_rep	three_prime_UTR	35167601	35167969	.	-	.	Parent=Os01t0823500-01
Chr01	irgsp1_rep	mRNA	35175501	35176458	.	+	.	ID=Os01t0823600-01;Name=Os01t0823600-01;Locus_id=Os01g0823600;Note=Conserved hypothetical protein.;Transcript_evidence=AK242079 (DDBJ%2C Best hit);ORF_evidence=NP_001044661.1 (RefSeq);NIAS_FLcDNA=J075136P07;TENOR=Os01t0823600-01;KEGG=Os01t0823600-01
Chr01	irgsp1_rep	five_prime_UTR	35175501	35175551	.	+	.	Parent=Os01t0823600-01
Chr01	irgsp1_rep	CDS	35175552	35175830	.	+	0	Parent=Os01t0823600-01
Chr01	irgsp1_rep	CDS	35175965	35176028	.	+	0	Parent=Os01t0823600-01
Chr01	irgsp1_rep	CDS	35176142	35176311	.	+	2	Parent=Os01t0823600-01
Chr01	irgsp1_rep	three_prime_UTR	35176312	35176458	.	+	.	Parent=Os01t0823600-01
Chr01	irgsp1_rep	mRNA	35176451	35180214	.	-	.	ID=Os01t0823700-01;Name=Os01t0823700-01;Locus_id=Os01g0823700;Note=Protein of unknown function DUF641%2C plant domain containing protein.;Transcript_evidence=AK067536 (DDBJ%2C Best hit);ORF_evidence=B8ABP8 (UniProt);InterPro=Domain of unknown function DUF641%2C plant (IPR006943);NIAS_FLcDNA=J013110B20;Expression=AK067536;TENOR=Os01t0823700-01;KEGG=Os01t0823700-01
Chr01	irgsp1_rep	five_prime_UTR	35178323	35180214	.	-	.	Parent=Os01t0823700-01
Chr01	irgsp1_rep	five_prime_UTR	35178007	35178031	.	-	.	Parent=Os01t0823700-01
Chr01	irgsp1_rep	CDS	35176693	35178006	.	-	0	Parent=Os01t0823700-01
Chr01	irgsp1_rep	three_prime_UTR	35176451	35176692	.	-	.	Parent=Os01t0823700-01
Chr01	irgsp1_rep	mRNA	35185594	35188003	.	-	.	ID=Os01t0823900-01;Name=Os01t0823900-01;Locus_id=Os01g0823900;RAP-DB Gene Symbol Synonym(s)=OsPUB3;RAP-DB Gene Name Synonym(s)=arm repeat cell adhesion protein%2C arm repeat protein%2C plant U-box-containing protein 3%2C U-box protein 3;Oryzabase Gene Symbol Synonym(s)=OsPUB3%2C PUB3;Oryzabase Gene Name Synonym(s)=arm repeat cell adhesion protein%2C arm repeat protein%2C plant U-box-containing protein 3%2C U-box protein 3;Note=U-box E3ubiquitin ligase%2C Positive regulation of cold stress response;Transcript_evidence=AK065307;ORF_evidence=Q8LRC7;GO=Biological Process: protein ubiquitination (GO:0016567),Molecular Function: ubiquitin-protein transferase activity (GO:0004842),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),U box domain (IPR003613),Armadillo-type fold (IPR016024),Armadillo-like helical (IPR011989),Armadillo (IPR000225);NIAS_FLcDNA=J013002O10;Manual Curation=February 21%2C 2017;Literature_PMID=28163713;Oryzabase=16283;Expression=AK065307;TENOR=Os01t0823900-01;KEGG=Os01t0823900-01;Subcellular location=cytosol (GO:0005829) [small cytosolic punctate bodies]
Chr01	irgsp1_rep	five_prime_UTR	35187835	35188003	.	-	.	Parent=Os01t0823900-01
Chr01	irgsp1_rep	CDS	35185792	35187834	.	-	0	Parent=Os01t0823900-01
Chr01	irgsp1_rep	three_prime_UTR	35185594	35185791	.	-	.	Parent=Os01t0823900-01
Chr01	irgsp1_rep	mRNA	35192320	35192671	.	+	.	ID=Os01t0823951-00;Name=Os01t0823951-00;Locus_id=Os01g0823951;Note=Conserved hypothetical protein.;Transcript_evidence=CT834780 (DDBJ%2C Best hit);ORF_evidence=Q2QVS7 (UniProt);TENOR=Os01t0823951-00
Chr01	irgsp1_rep	five_prime_UTR	35192320	35192462	.	+	.	Parent=Os01t0823951-00
Chr01	irgsp1_rep	CDS	35192463	35192671	.	+	0	Parent=Os01t0823951-00
Chr01	irgsp1_rep	mRNA	35192713	35194379	.	+	.	ID=Os01t0824000-01;Name=Os01t0824000-01;Locus_id=Os01g0824000;Note=Conserved hypothetical protein.;Transcript_evidence=AK108946 (DDBJ%2C Best hit);ORF_evidence=Q6Z261 (UniProt);NIAS_FLcDNA=002-153-B12;Expression=AK108946;TENOR=Os01t0824000-01;KEGG=Os01t0824000-01
Chr01	irgsp1_rep	five_prime_UTR	35192713	35192713	.	+	.	Parent=Os01t0824000-01
Chr01	irgsp1_rep	CDS	35192714	35193265	.	+	0	Parent=Os01t0824000-01
Chr01	irgsp1_rep	three_prime_UTR	35193266	35194379	.	+	.	Parent=Os01t0824000-01
Chr01	irgsp1_rep	mRNA	35224585	35226419	.	+	.	ID=Os01t0824500-00;Name=Os01t0824500-00;Locus_id=Os01g0824500;Note=Hypothetical conserved gene.;Transcript_evidence=BT061171 (DDBJ);ORF_evidence=NP_850143.1 (RefSeq);TENOR=Os01t0824500-00;KEGG=Os01t0824500-00
Chr01	irgsp1_rep	five_prime_UTR	35224585	35224855	.	+	.	Parent=Os01t0824500-00
Chr01	irgsp1_rep	CDS	35224856	35225065	.	+	0	Parent=Os01t0824500-00
Chr01	irgsp1_rep	CDS	35225864	35226067	.	+	0	Parent=Os01t0824500-00
Chr01	irgsp1_rep	three_prime_UTR	35226068	35226419	.	+	.	Parent=Os01t0824500-00
Chr01	irgsp1_rep	mRNA	35228913	35231725	.	+	.	ID=Os01t0824600-01;Name=Os01t0824600-01;Locus_id=Os01g0824600;CGSNL Gene Symbol=CIPK11;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 11;Oryzabase Gene Symbol Synonym(s)=OsCIPK11%2C CIPK11%2C OsMSURPK2%2C OsCIPK11;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 11;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK103032 (DDBJ%2C Best hit);ORF_evidence=B3GM00 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),NAF domain (IPR004041),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),NAF/FISL domain (IPR018451),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033117C14;Oryzabase=7398;Expression=AK103032;TENOR=Os01t0824600-01;KEGG=Os01t0824600-01 (EC:2.7.11.11)
Chr01	irgsp1_rep	five_prime_UTR	35228913	35229219	.	+	.	Parent=Os01t0824600-01
Chr01	irgsp1_rep	five_prime_UTR	35229696	35230009	.	+	.	Parent=Os01t0824600-01
Chr01	irgsp1_rep	CDS	35230010	35231518	.	+	0	Parent=Os01t0824600-01
Chr01	irgsp1_rep	three_prime_UTR	35231519	35231725	.	+	.	Parent=Os01t0824600-01
Chr01	irgsp1_rep	mRNA	35230128	35234373	.	+	.	ID=Os01t0824600-02;Name=Os01t0824600-02;Locus_id=Os01g0824600;CGSNL Gene Symbol=CIPK11;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 11;Oryzabase Gene Symbol Synonym(s)=OsCIPK11%2C CIPK11%2C OsMSURPK2%2C OsCIPK11;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 11;Note=Similar to CBL-interacting protein kinase 2.;Transcript_evidence=AK119278 (DDBJ%2C Best hit);ORF_evidence=B3GM00 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),NAF domain (IPR004041),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),NAF/FISL domain (IPR018451),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-130-B11;Oryzabase=7398;Expression=AK119278;TENOR=Os01t0824600-02;KEGG=Os01t0824600-02 (EC:2.7.11.1)
Chr01	irgsp1_rep	five_prime_UTR	35230128	35230129	.	+	.	Parent=Os01t0824600-02
Chr01	irgsp1_rep	CDS	35230130	35231518	.	+	0	Parent=Os01t0824600-02
Chr01	irgsp1_rep	three_prime_UTR	35231519	35231534	.	+	.	Parent=Os01t0824600-02
Chr01	irgsp1_rep	three_prime_UTR	35232277	35232577	.	+	.	Parent=Os01t0824600-02
Chr01	irgsp1_rep	three_prime_UTR	35232986	35234373	.	+	.	Parent=Os01t0824600-02
Chr01	irgsp1_rep	mRNA	35238064	35240841	.	+	.	ID=Os01t0824700-01;Name=Os01t0824700-01;Locus_id=Os01g0824700;Oryzabase Gene Symbol Synonym(s)=OsFbox048%2C OsFbox48%2C Os_F0202;Oryzabase Gene Name Synonym(s)=F-box protein 48;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK121084 (DDBJ%2C Best hit);ORF_evidence=Q5JN70 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023063M01;Oryzabase=16847;Expression=AK121084;TENOR=Os01t0824700-01;KEGG=Os01t0824700-01
Chr01	irgsp1_rep	five_prime_UTR	35238064	35238272	.	+	.	Parent=Os01t0824700-01
Chr01	irgsp1_rep	five_prime_UTR	35238914	35238971	.	+	.	Parent=Os01t0824700-01
Chr01	irgsp1_rep	CDS	35238972	35239717	.	+	0	Parent=Os01t0824700-01
Chr01	irgsp1_rep	CDS	35239819	35240119	.	+	1	Parent=Os01t0824700-01
Chr01	irgsp1_rep	three_prime_UTR	35240120	35240841	.	+	.	Parent=Os01t0824700-01
Chr01	irgsp1_rep	mRNA	35243923	35246577	.	+	.	ID=Os01t0824800-01;Name=Os01t0824800-01;Locus_id=Os01g0824800;Note=Conserved hypothetical protein.;Transcript_evidence=AK066200 (DDBJ%2C Best hit);ORF_evidence=A2WWI4 (UniProt);NIAS_FLcDNA=J013055G05;Expression=AK066200;TENOR=Os01t0824800-01;KEGG=Os01t0824800-01
Chr01	irgsp1_rep	five_prime_UTR	35243923	35244023	.	+	.	Parent=Os01t0824800-01
Chr01	irgsp1_rep	CDS	35244024	35244059	.	+	0	Parent=Os01t0824800-01
Chr01	irgsp1_rep	CDS	35245226	35246392	.	+	0	Parent=Os01t0824800-01
Chr01	irgsp1_rep	three_prime_UTR	35246393	35246577	.	+	.	Parent=Os01t0824800-01
Chr01	irgsp1_rep	mRNA	35247876	35248925	.	+	.	ID=Os01t0824900-01;Name=Os01t0824900-01;Locus_id=Os01g0824900;Note=Protein of unknown function DUF688 domain containing protein.;Transcript_evidence=AK061414 (DDBJ%2C Best hit);ORF_evidence=A2WWI5 (UniProt);InterPro=Protein of unknown function DUF688 (IPR007789);NIAS_FLcDNA=006-306-D05;Expression=AK061414;TENOR=Os01t0824900-01;KEGG=Os01t0824900-01
Chr01	irgsp1_rep	five_prime_UTR	35247876	35247994	.	+	.	Parent=Os01t0824900-01
Chr01	irgsp1_rep	CDS	35247995	35248669	.	+	0	Parent=Os01t0824900-01
Chr01	irgsp1_rep	three_prime_UTR	35248670	35248925	.	+	.	Parent=Os01t0824900-01
Chr01	irgsp1_rep	mRNA	35257561	35259062	.	+	.	ID=Os01t0825000-01;Name=Os01t0825000-01;Locus_id=Os01g0825000;RAP-DB Gene Symbol Synonym(s)=LBD1-8;RAP-DB Gene Name Synonym(s)=lateral organ boundary domain 1-8;CGSNL Gene Symbol=LBD1-8;CGSNL Gene Name=LBD-CONTAINING PROTEIN 1-8;Oryzabase Gene Symbol Synonym(s)=OsLBD1-8;Oryzabase Gene Name Synonym(s)=lateral organ boundary domain-containing protein 1-8%2C LBD-containing protein 1-8;Note=Lateral organ boundary domain (LBD)-containing protein%2C LBD transcription factor%2C Regulation of constitutive aerenchyma and lateral root formation;Transcript_evidence=AK121919;ORF_evidence=Q5QMB4;InterPro=Lateral organ boundaries%2C LOB (IPR004883);NIAS_FLcDNA=J033106D14;Manual Curation=September 26%2C 2019;Literature_PMID=31548376;Oryzabase=23305;Expression=AK121919;TENOR=Os01t0825000-01;KEGG=Os01t0825000-01
Chr01	irgsp1_rep	five_prime_UTR	35257561	35257729	.	+	.	Parent=Os01t0825000-01
Chr01	irgsp1_rep	CDS	35257730	35257743	.	+	0	Parent=Os01t0825000-01
Chr01	irgsp1_rep	CDS	35258029	35258329	.	+	1	Parent=Os01t0825000-01
Chr01	irgsp1_rep	CDS	35258421	35258861	.	+	0	Parent=Os01t0825000-01
Chr01	irgsp1_rep	three_prime_UTR	35258862	35259062	.	+	.	Parent=Os01t0825000-01
Chr01	irgsp1_rep	mRNA	35278373	35279026	.	-	.	ID=Os01t0825166-00;Name=Os01t0825166-00;Locus_id=Os01g0825166;Note=Similar to Splicing coactivator subunit-like protein.;Transcript_evidence=EU944053 (DDBJ);ORF_evidence=C8TFH6 (UniProt);TENOR=Os01t0825166-00
Chr01	irgsp1_rep	CDS	35278373	35279026	.	-	0	Parent=Os01t0825166-00
Chr01	irgsp1_rep	mRNA	35287290	35287943	.	-	.	ID=Os01t0825332-00;Name=Os01t0825332-00;Locus_id=Os01g0825332;Note=Similar to Splicing coactivator subunit-like protein.;Transcript_evidence=EU944053 (DDBJ);ORF_evidence=C8TFH6 (UniProt);TENOR=Os01t0825332-00
Chr01	irgsp1_rep	CDS	35287290	35287943	.	-	0	Parent=Os01t0825332-00
Chr01	irgsp1_rep	mRNA	35303468	35305739	.	-	.	ID=Os01t0825500-01;Name=Os01t0825500-01;Locus_id=Os01g0825500;Note=Nodulin-like domain containing protein.;Transcript_evidence=AK103941 (DDBJ%2C Best hit),AK072321 (DDBJ%2C Best hit);ORF_evidence=NP_001148064.1 (RefSeq);InterPro=Nodulin-like (IPR010658),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=001-013-G09,J023026C12;TENOR=Os01t0825500-01
Chr01	irgsp1_rep	five_prime_UTR	35305707	35305739	.	-	.	Parent=Os01t0825500-01
Chr01	irgsp1_rep	CDS	35304553	35305706	.	-	0	Parent=Os01t0825500-01
Chr01	irgsp1_rep	CDS	35303746	35304214	.	-	1	Parent=Os01t0825500-01
Chr01	irgsp1_rep	three_prime_UTR	35303468	35303745	.	-	.	Parent=Os01t0825500-01
Chr01	irgsp1_rep	mRNA	35304358	35305739	.	-	.	ID=Os01t0825500-02;Name=Os01t0825500-02;Locus_id=Os01g0825500;Note=Similar to nodulin-like protein.;Transcript_evidence=AK060613 (DDBJ%2C Best hit);ORF_evidence=NP_001148064.1 (RefSeq);InterPro=Nodulin-like (IPR010658);NIAS_FLcDNA=001-025-F06;Expression=AK060613;TENOR=Os01t0825500-02;KEGG=Os01t0825500-02
Chr01	irgsp1_rep	five_prime_UTR	35305707	35305739	.	-	.	Parent=Os01t0825500-02
Chr01	irgsp1_rep	CDS	35304549	35305706	.	-	0	Parent=Os01t0825500-02
Chr01	irgsp1_rep	three_prime_UTR	35304358	35304548	.	-	.	Parent=Os01t0825500-02
Chr01	irgsp1_rep	mRNA	35314473	35318814	.	-	.	ID=Os01t0825700-01;Name=Os01t0825700-01;Locus_id=Os01g0825700;Oryzabase Gene Name Synonym(s)=VHS and GAT domain protein;Note=Similar to VHS2 protein (Fragment).;Transcript_evidence=AK070492 (DDBJ%2C Best hit);ORF_evidence=NP_001151587.1 (RefSeq);GO=Biological Process: intracellular protein transport (GO:0006886),Cellular Component: intracellular (GO:0005622);InterPro=VHS (IPR002014),GAT (IPR004152),ENTH/VHS (IPR008942),VHS subgroup (IPR018205);NIAS_FLcDNA=J023048B11;Oryzabase=15985;Expression=AK070492;TENOR=Os01t0825700-01;KEGG=Os01t0825700-01
Chr01	irgsp1_rep	five_prime_UTR	35318763	35318814	.	-	.	Parent=Os01t0825700-01
Chr01	irgsp1_rep	CDS	35318614	35318762	.	-	0	Parent=Os01t0825700-01
Chr01	irgsp1_rep	CDS	35317984	35318062	.	-	1	Parent=Os01t0825700-01
Chr01	irgsp1_rep	CDS	35317702	35317800	.	-	0	Parent=Os01t0825700-01
Chr01	irgsp1_rep	CDS	35316733	35316846	.	-	0	Parent=Os01t0825700-01
Chr01	irgsp1_rep	CDS	35316371	35316519	.	-	0	Parent=Os01t0825700-01
Chr01	irgsp1_rep	CDS	35316190	35316271	.	-	1	Parent=Os01t0825700-01
Chr01	irgsp1_rep	CDS	35315991	35316076	.	-	0	Parent=Os01t0825700-01
Chr01	irgsp1_rep	CDS	35315602	35315829	.	-	1	Parent=Os01t0825700-01
Chr01	irgsp1_rep	CDS	35314718	35315525	.	-	1	Parent=Os01t0825700-01
Chr01	irgsp1_rep	three_prime_UTR	35314473	35314717	.	-	.	Parent=Os01t0825700-01
Chr01	irgsp1_rep	mRNA	35321013	35327164	.	-	.	ID=Os01t0825800-01;Name=Os01t0825800-01;Locus_id=Os01g0825800;Oryzabase Gene Symbol Synonym(s)=OsATL7;Oryzabase Gene Name Synonym(s)=amino acid transporter-like 7;Note=Amino acid transporter%2C transmembrane domain containing protein.;Transcript_evidence=AK102220 (DDBJ%2C Best hit);ORF_evidence=B6UB15 (UniProt);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=J033087L14;Oryzabase=18524;Expression=AK102220;TENOR=Os01t0825800-01;KEGG=Os01t0825800-01
Chr01	irgsp1_rep	five_prime_UTR	35327139	35327164	.	-	.	Parent=Os01t0825800-01
Chr01	irgsp1_rep	CDS	35326742	35327138	.	-	0	Parent=Os01t0825800-01
Chr01	irgsp1_rep	CDS	35326476	35326628	.	-	2	Parent=Os01t0825800-01
Chr01	irgsp1_rep	CDS	35321982	35322185	.	-	2	Parent=Os01t0825800-01
Chr01	irgsp1_rep	CDS	35321437	35321903	.	-	2	Parent=Os01t0825800-01
Chr01	irgsp1_rep	CDS	35321195	35321344	.	-	0	Parent=Os01t0825800-01
Chr01	irgsp1_rep	three_prime_UTR	35321013	35321194	.	-	.	Parent=Os01t0825800-01
Chr01	irgsp1_rep	mRNA	35320840	35322892	.	-	.	ID=Os01t0825800-02;Name=Os01t0825800-02;Locus_id=Os01g0825800;Oryzabase Gene Symbol Synonym(s)=OsATL7;Oryzabase Gene Name Synonym(s)=amino acid transporter-like 7;Note=Similar to Amino acid-polyamine transporter.;Transcript_evidence=AK064301 (DDBJ%2C Best hit);ORF_evidence=B6UB15 (UniProt);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=002-107-B03;Oryzabase=18524;Expression=AK064301;TENOR=Os01t0825800-02;KEGG=Os01t0825800-02
Chr01	irgsp1_rep	five_prime_UTR	35322891	35322892	.	-	.	Parent=Os01t0825800-02
Chr01	irgsp1_rep	CDS	35322752	35322890	.	-	0	Parent=Os01t0825800-02
Chr01	irgsp1_rep	CDS	35322487	35322636	.	-	2	Parent=Os01t0825800-02
Chr01	irgsp1_rep	CDS	35321982	35322185	.	-	2	Parent=Os01t0825800-02
Chr01	irgsp1_rep	CDS	35321437	35321903	.	-	2	Parent=Os01t0825800-02
Chr01	irgsp1_rep	CDS	35321195	35321344	.	-	0	Parent=Os01t0825800-02
Chr01	irgsp1_rep	three_prime_UTR	35320840	35321194	.	-	.	Parent=Os01t0825800-02
Chr01	irgsp1_rep	mRNA	35328778	35331207	.	+	.	ID=Os01t0825900-01;Name=Os01t0825900-01;Locus_id=Os01g0825900;Note=Protein of unknown function Cys-rich family protein.;Transcript_evidence=AK101175 (DDBJ%2C Best hit);ORF_evidence=A2WWJ2 (UniProt);InterPro=Uncharacterised protein family Cys-rich (IPR006461),Protein of unknown function DUF2985 (IPR021369);NIAS_FLcDNA=J033029A05;Expression=AK101175;TENOR=Os01t0825900-01;KEGG=Os01t0825900-01
Chr01	irgsp1_rep	five_prime_UTR	35328778	35329182	.	+	.	Parent=Os01t0825900-01
Chr01	irgsp1_rep	five_prime_UTR	35329326	35329375	.	+	.	Parent=Os01t0825900-01
Chr01	irgsp1_rep	CDS	35329376	35330953	.	+	0	Parent=Os01t0825900-01
Chr01	irgsp1_rep	three_prime_UTR	35330954	35331207	.	+	.	Parent=Os01t0825900-01
Chr01	irgsp1_rep	mRNA	35332717	35333445	.	+	.	ID=Os01t0826000-00;Name=Os01t0826000-00;Locus_id=Os01g0826000;CGSNL Gene Symbol=ATX;CGSNL Gene Name=ANTIOXIDANT;Oryzabase Gene Symbol Synonym(s)=OsATX%2C OsHMP7%2C HMP7%2C OsHMP07;Oryzabase Gene Name Synonym(s)=antioxidant%2C Heavy metal-associated protein 7;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AJ308374 (DDBJ%2C Best hit);ORF_evidence=NP_001078533.1 (RefSeq);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);Oryzabase=20174;Expression=AJ308374;TENOR=Os01t0826000-00;KEGG=Os01t0826000-00
Chr01	irgsp1_rep	five_prime_UTR	35332717	35332755	.	+	.	Parent=Os01t0826000-00
Chr01	irgsp1_rep	CDS	35332756	35332761	.	+	0	Parent=Os01t0826000-00
Chr01	irgsp1_rep	CDS	35332942	35333017	.	+	0	Parent=Os01t0826000-00
Chr01	irgsp1_rep	CDS	35333118	35333245	.	+	2	Parent=Os01t0826000-00
Chr01	irgsp1_rep	three_prime_UTR	35333246	35333445	.	+	.	Parent=Os01t0826000-00
Chr01	irgsp1_rep	mRNA	35347982	35350546	.	+	.	ID=Os01t0826400-01;Name=Os01t0826400-01;Locus_id=Os01g0826400;CGSNL Gene Symbol=WRKY24;CGSNL Gene Name=WRKY GENE 24;Oryzabase Gene Symbol Synonym(s)=OsWRKY24;Oryzabase Gene Name Synonym(s)=Rice WRKY gene24;Note=WRKY transcription factor 24 (WRKY24).;Transcript_evidence=AK107199 (DDBJ%2C Best hit);ORF_evidence=B3GAU9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);NIAS_FLcDNA=002-125-B01;Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6536;Expression=AK107199;TENOR=Os01t0826400-01;KEGG=Os01t0826400-01
Chr01	irgsp1_rep	five_prime_UTR	35347982	35348115	.	+	.	Parent=Os01t0826400-01
Chr01	irgsp1_rep	CDS	35348116	35348376	.	+	0	Parent=Os01t0826400-01
Chr01	irgsp1_rep	CDS	35348491	35348694	.	+	0	Parent=Os01t0826400-01
Chr01	irgsp1_rep	CDS	35348892	35349478	.	+	0	Parent=Os01t0826400-01
Chr01	irgsp1_rep	CDS	35349566	35349727	.	+	1	Parent=Os01t0826400-01
Chr01	irgsp1_rep	CDS	35349837	35350290	.	+	1	Parent=Os01t0826400-01
Chr01	irgsp1_rep	three_prime_UTR	35350291	35350546	.	+	.	Parent=Os01t0826400-01
Chr01	irgsp1_rep	mRNA	35378733	35379626	.	-	.	ID=Os01t0826800-01;Name=Os01t0826800-01;Locus_id=Os01g0826800;Note=Conserved hypothetical protein.;Transcript_evidence=AK111090 (DDBJ%2C Best hit);ORF_evidence=A2WWJ7 (UniProt);NIAS_FLcDNA=002-175-G01;Expression=AK111090;TENOR=Os01t0826800-01;KEGG=Os01t0826800-01
Chr01	irgsp1_rep	five_prime_UTR	35379534	35379626	.	-	.	Parent=Os01t0826800-01
Chr01	irgsp1_rep	CDS	35379018	35379533	.	-	0	Parent=Os01t0826800-01
Chr01	irgsp1_rep	three_prime_UTR	35378733	35379017	.	-	.	Parent=Os01t0826800-01
Chr01	irgsp1_rep	mRNA	35386776	35391613	.	-	.	ID=Os01t0826900-01;Name=Os01t0826900-01;Locus_id=Os01g0826900;Note=Domain of unknown function DUF399 domain containing protein.;Transcript_evidence=AK072789 (DDBJ%2C Best hit),AK105709 (DDBJ%2C Best hit);ORF_evidence=B9EU88 (UniProt);InterPro=Domain of unknown function DUF399 (IPR007314),Protein of unknown function DUF3411 (IPR021825);NIAS_FLcDNA=J023141F09,001-201-E07;Expression=AK072789;TENOR=Os01t0826900-01;KEGG=Os01t0826900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	35391613	35391613	.	-	.	Parent=Os01t0826900-01
Chr01	irgsp1_rep	CDS	35390966	35391612	.	-	0	Parent=Os01t0826900-01
Chr01	irgsp1_rep	CDS	35390355	35390484	.	-	1	Parent=Os01t0826900-01
Chr01	irgsp1_rep	CDS	35389436	35389966	.	-	0	Parent=Os01t0826900-01
Chr01	irgsp1_rep	CDS	35389026	35389133	.	-	0	Parent=Os01t0826900-01
Chr01	irgsp1_rep	CDS	35388262	35388807	.	-	0	Parent=Os01t0826900-01
Chr01	irgsp1_rep	CDS	35387941	35388063	.	-	0	Parent=Os01t0826900-01
Chr01	irgsp1_rep	CDS	35387079	35387237	.	-	0	Parent=Os01t0826900-01
Chr01	irgsp1_rep	three_prime_UTR	35386776	35387078	.	-	.	Parent=Os01t0826900-01
Chr01	irgsp1_rep	mRNA	35396166	35400138	.	-	.	ID=Os01t0827200-01;Name=Os01t0827200-01;Locus_id=Os01g0827200;Note=Phox-like domain containing protein.;Transcript_evidence=AK120476 (DDBJ%2C Best hit),AK073922 (DDBJ%2C Best hit);ORF_evidence=B4FAI4 (UniProt);GO=Biological Process: cell communication (GO:0007154),Molecular Function: protein binding (GO:0005515),Molecular Function: phosphatidylinositol binding (GO:0035091);InterPro=Phox homologous domain (IPR001683),Vps5 C-terminal (IPR015404);NIAS_FLcDNA=J013111G20,J033071C19;TENOR=Os01t0827200-01
Chr01	irgsp1_rep	five_prime_UTR	35400030	35400138	.	-	.	Parent=Os01t0827200-01
Chr01	irgsp1_rep	CDS	35399154	35400029	.	-	0	Parent=Os01t0827200-01
Chr01	irgsp1_rep	CDS	35398698	35398907	.	-	0	Parent=Os01t0827200-01
Chr01	irgsp1_rep	CDS	35398354	35398614	.	-	0	Parent=Os01t0827200-01
Chr01	irgsp1_rep	CDS	35397412	35397498	.	-	0	Parent=Os01t0827200-01
Chr01	irgsp1_rep	CDS	35396558	35396638	.	-	0	Parent=Os01t0827200-01
Chr01	irgsp1_rep	three_prime_UTR	35396166	35396557	.	-	.	Parent=Os01t0827200-01
Chr01	irgsp1_rep	mRNA	35402795	35405298	.	+	.	ID=Os01t0827300-01;Name=Os01t0827300-01;Locus_id=Os01g0827300;RAP-DB Gene Symbol Synonym(s)=OsChI1;RAP-DB Gene Name Synonym(s)=chilling inducible gene 1;CGSNL Gene Symbol=LAC3;CGSNL Gene Name=LACCASE 3;Oryzabase Gene Symbol Synonym(s)=OsChI1%2C ChI1%2C OsLAC3;Oryzabase Gene Name Synonym(s)=chilling inducible gene 1%2C lactase%2C lactase 3;Note=Putative laccase precursor%2C Abiotic stress response;Transcript_evidence=AK071929;ORF_evidence=Q941X2,B7EK61;GO=Biological Process: lignin catabolic process (GO:0046274),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: copper ion binding (GO:0005507),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: hydroquinone:oxygen oxidoreductase activity (GO:0052716),Cellular Component: apoplast (GO:0048046);InterPro=Laccase (IPR017761),Cupredoxin (IPR008972),Multicopper oxidase%2C type 3 (IPR011707),Multicopper oxidase%2C type 1 (IPR001117),Multicopper oxidase%2C type 2 (IPR011706),Multicopper oxidase%2C copper-binding site (IPR002355);NIAS_FLcDNA=J013072C02;Manual Curation=July 6%2C 2015;Literature_PMID=25218040;Oryzabase=18560;Expression=AK071929;TENOR=Os01t0827300-01;KEGG=Os01t0827300-01 (EC:1.10.3.2)
Chr01	irgsp1_rep	five_prime_UTR	35402795	35402905	.	+	.	Parent=Os01t0827300-01
Chr01	irgsp1_rep	CDS	35402906	35403001	.	+	0	Parent=Os01t0827300-01
Chr01	irgsp1_rep	CDS	35403139	35403290	.	+	0	Parent=Os01t0827300-01
Chr01	irgsp1_rep	CDS	35403435	35403679	.	+	1	Parent=Os01t0827300-01
Chr01	irgsp1_rep	CDS	35403785	35403913	.	+	2	Parent=Os01t0827300-01
Chr01	irgsp1_rep	CDS	35404010	35405091	.	+	2	Parent=Os01t0827300-01
Chr01	irgsp1_rep	three_prime_UTR	35405092	35405298	.	+	.	Parent=Os01t0827300-01
Chr01	irgsp1_rep	mRNA	35407605	35408396	.	-	.	ID=Os01t0827400-01;Name=Os01t0827400-01;Locus_id=Os01g0827400;Note=Prenylated rab acceptor PRA1 family protein.;Transcript_evidence=AK108526 (DDBJ%2C Best hit);ORF_evidence=NP_001149099.1 (RefSeq);InterPro=Prenylated rab acceptor PRA1 (IPR004895);NIAS_FLcDNA=002-144-B09;Expression=AK108526;TENOR=Os01t0827400-01;KEGG=Os01t0827400-01
Chr01	irgsp1_rep	five_prime_UTR	35408368	35408396	.	-	.	Parent=Os01t0827400-01
Chr01	irgsp1_rep	CDS	35407930	35408367	.	-	0	Parent=Os01t0827400-01
Chr01	irgsp1_rep	three_prime_UTR	35407605	35407929	.	-	.	Parent=Os01t0827400-01
Chr01	irgsp1_rep	mRNA	35409292	35411679	.	+	.	ID=Os01t0827500-01;Name=Os01t0827500-01;Locus_id=Os01g0827500;RAP-DB Gene Symbol Synonym(s)=OsExo70B1;RAP-DB Gene Name Synonym(s)=exocyst subunit EXO70 family protein B1;CGSNL Gene Symbol=EXO70B1;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN B1;Oryzabase Gene Symbol Synonym(s)=OsEXO70B1%2C OsExo70B1%2C OrysaB1_Exo70;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein B1;Note=Exocyst subunit EXO70 family protein%2C Positive regulation of disease resistance;Transcript_evidence=AK111814;ORF_evidence=Q941X1;GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Cullin repeat-like-containing domain superfamily (IPR016159),Exocyst complex component Exo70 (IPR004140);NIAS_FLcDNA=J013133L14;Manual Curation=October 2%2C 2020;Literature_PMID=32992695;Oryzabase=20324;Expression=AK111814;TENOR=Os01t0827500-01;KEGG=Os01t0827500-01;Subcellular location=cytoplasm (GO:0005737), nucleus (GO:0005634), plasma membrane (GO:0005886)
Chr01	irgsp1_rep	five_prime_UTR	35409292	35409487	.	+	.	Parent=Os01t0827500-01
Chr01	irgsp1_rep	CDS	35409488	35411446	.	+	0	Parent=Os01t0827500-01
Chr01	irgsp1_rep	three_prime_UTR	35411447	35411679	.	+	.	Parent=Os01t0827500-01
Chr01	irgsp1_rep	mRNA	35412930	35417464	.	+	.	ID=Os01t0827600-01;Name=Os01t0827600-01;Locus_id=Os01g0827600;CGSNL Gene Symbol=EXO70B2;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN B2;Oryzabase Gene Symbol Synonym(s)=OsEXO70B2%2C OsExo70B2%2C OrysaB2_Exo70;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein B2;Note=Exo70 exocyst complex subunit family protein.;Transcript_evidence=AK122173 (DDBJ%2C Best hit);ORF_evidence=A2ZZ63 (UniProt);GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exo70 exocyst complex subunit (IPR004140),Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=J033148K20;Oryzabase=20325;Expression=AK122173;TENOR=Os01t0827600-01;KEGG=Os01t0827600-01
Chr01	irgsp1_rep	five_prime_UTR	35412930	35413042	.	+	.	Parent=Os01t0827600-01
Chr01	irgsp1_rep	five_prime_UTR	35413167	35413196	.	+	.	Parent=Os01t0827600-01
Chr01	irgsp1_rep	CDS	35413197	35414809	.	+	0	Parent=Os01t0827600-01
Chr01	irgsp1_rep	CDS	35416394	35416442	.	+	1	Parent=Os01t0827600-01
Chr01	irgsp1_rep	three_prime_UTR	35416443	35416459	.	+	.	Parent=Os01t0827600-01
Chr01	irgsp1_rep	three_prime_UTR	35416577	35417464	.	+	.	Parent=Os01t0827600-01
Chr01	irgsp1_rep	mRNA	35415682	35417174	.	-	.	ID=Os01t0827700-00;Name=Os01t0827700-00;Locus_id=Os01g0827700;CGSNL Gene Symbol=GELP26;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 26;Oryzabase Gene Symbol Synonym(s)=OsGELP26;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 26;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=FP092137 (DDBJ);ORF_evidence=Q941W9 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: lipase activity (GO:0016298),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087),Lipase%2C GDSL%2C active site (IPR008265),Esterase%2C SGNH hydrolase-type (IPR013830),Esterase%2C SGNH hydrolase-type%2C subgroup (IPR013831);Oryzabase=10976;TENOR=Os01t0827700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	35416569	35417174	.	-	0	Parent=Os01t0827700-00
Chr01	irgsp1_rep	CDS	35416194	35416449	.	-	0	Parent=Os01t0827700-00
Chr01	irgsp1_rep	CDS	35415706	35415896	.	-	2	Parent=Os01t0827700-00
Chr01	irgsp1_rep	three_prime_UTR	35415682	35415705	.	-	.	Parent=Os01t0827700-00
Chr01	irgsp1_rep	mRNA	35420889	35421862	.	+	.	ID=Os01t0827800-00;Name=Os01t0827800-00;Locus_id=Os01g0827800;CGSNL Gene Symbol=PYL/RCAR13;CGSNL Gene Name=PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 1;Oryzabase Gene Symbol Synonym(s)=OsPYL/RCAR1%2C PYL1%2C OsPYL1%2C OsPYL4%2C PYL4;Oryzabase Gene Name Synonym(s)=pyrabactin resistance-like 1%2C PYR1-like 4%2C pyrabactin resistance 1-like 4;Note=Similar to AT-rich element binding factor 3.;Transcript_evidence=FP098410 (DDBJ);ORF_evidence=NP_001148260.1 (RefSeq);InterPro=Polyketide cyclase/dehydrase (IPR019587),START-like domain (IPR023393);Oryzabase=17869;TENOR=Os01t0827800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	35420889	35421659	.	+	0	Parent=Os01t0827800-00
Chr01	irgsp1_rep	three_prime_UTR	35421660	35421862	.	+	.	Parent=Os01t0827800-00
Chr01	irgsp1_rep	mRNA	35431411	35432857	.	+	.	ID=Os01t0828100-00;Name=Os01t0828100-00;Locus_id=Os01g0828100;CGSNL Gene Symbol=CCR6;CGSNL Gene Name=CINNAMOYL-COA REDUCTASE 6;Oryzabase Gene Symbol Synonym(s)=OsCCR6;Oryzabase Gene Name Synonym(s)=Cinnamoyl-CoA reductase 6;Note=Similar to Cinnamoyl-CoA reductase.;Transcript_evidence=CT834815 (DDBJ%2C Best hit);ORF_evidence=C3VPA5 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);Oryzabase=22241;TENOR=Os01t0828100-00;KEGG=Os01t0828100-00
Chr01	irgsp1_rep	five_prime_UTR	35431411	35431411	.	+	.	Parent=Os01t0828100-00
Chr01	irgsp1_rep	CDS	35431412	35431432	.	+	0	Parent=Os01t0828100-00
Chr01	irgsp1_rep	CDS	35431523	35431708	.	+	0	Parent=Os01t0828100-00
Chr01	irgsp1_rep	CDS	35432102	35432264	.	+	0	Parent=Os01t0828100-00
Chr01	irgsp1_rep	CDS	35432342	35432528	.	+	2	Parent=Os01t0828100-00
Chr01	irgsp1_rep	CDS	35432616	35432757	.	+	1	Parent=Os01t0828100-00
Chr01	irgsp1_rep	three_prime_UTR	35432758	35432857	.	+	.	Parent=Os01t0828100-00
Chr01	irgsp1_rep	mRNA	35433722	35435429	.	+	.	ID=Os01t0828200-00;Name=Os01t0828200-00;Locus_id=Os01g0828200;Note=Hypothetical conserved gene.;Transcript_evidence=BT038904 (DDBJ);ORF_evidence=Q5QLT3 (UniProt);InterPro=Gamma interferon inducible lysosomal thiol reductase GILT (IPR004911);TENOR=Os01t0828200-00;KEGG=Os01t0828200-00
Chr01	irgsp1_rep	five_prime_UTR	35433722	35433789	.	+	.	Parent=Os01t0828200-00
Chr01	irgsp1_rep	CDS	35433790	35434059	.	+	0	Parent=Os01t0828200-00
Chr01	irgsp1_rep	CDS	35434177	35434242	.	+	0	Parent=Os01t0828200-00
Chr01	irgsp1_rep	CDS	35434478	35434618	.	+	0	Parent=Os01t0828200-00
Chr01	irgsp1_rep	CDS	35435083	35435175	.	+	0	Parent=Os01t0828200-00
Chr01	irgsp1_rep	CDS	35435271	35435429	.	+	0	Parent=Os01t0828200-00
Chr01	irgsp1_rep	mRNA	35436761	35441722	.	+	.	ID=Os01t0828300-01;Name=Os01t0828300-01;Locus_id=Os01g0828300;Note=Protein of unknown function DUF248%2C methyltransferase putative family protein.;Transcript_evidence=AK069906 (DDBJ%2C Best hit);ORF_evidence=NP_565926.1 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Protein of unknown function DUF248%2C methyltransferase putative (IPR004159);NIAS_FLcDNA=J023034H23;Expression=AK069906;TENOR=Os01t0828300-01;KEGG=Os01t0828300-01
Chr01	irgsp1_rep	five_prime_UTR	35436761	35436883	.	+	.	Parent=Os01t0828300-01
Chr01	irgsp1_rep	CDS	35436884	35437537	.	+	0	Parent=Os01t0828300-01
Chr01	irgsp1_rep	CDS	35438138	35438287	.	+	0	Parent=Os01t0828300-01
Chr01	irgsp1_rep	CDS	35438558	35438827	.	+	0	Parent=Os01t0828300-01
Chr01	irgsp1_rep	CDS	35438986	35439097	.	+	0	Parent=Os01t0828300-01
Chr01	irgsp1_rep	CDS	35439716	35439887	.	+	2	Parent=Os01t0828300-01
Chr01	irgsp1_rep	CDS	35440119	35440382	.	+	1	Parent=Os01t0828300-01
Chr01	irgsp1_rep	CDS	35440910	35441104	.	+	1	Parent=Os01t0828300-01
Chr01	irgsp1_rep	CDS	35441216	35441423	.	+	1	Parent=Os01t0828300-01
Chr01	irgsp1_rep	three_prime_UTR	35441424	35441722	.	+	.	Parent=Os01t0828300-01
Chr01	irgsp1_rep	mRNA	35436810	35441457	.	-	.	ID=Os01t0828400-00;Name=Os01t0828400-00;Locus_id=Os01g0828400;Note=Hypothetical protein.;Transcript_evidence=tplb0026p23 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0828400-00
Chr01	irgsp1_rep	five_prime_UTR	35441213	35441457	.	-	.	Parent=Os01t0828400-00
Chr01	irgsp1_rep	five_prime_UTR	35440932	35441101	.	-	.	Parent=Os01t0828400-00
Chr01	irgsp1_rep	five_prime_UTR	35440127	35440399	.	-	.	Parent=Os01t0828400-00
Chr01	irgsp1_rep	five_prime_UTR	35439707	35439893	.	-	.	Parent=Os01t0828400-00
Chr01	irgsp1_rep	five_prime_UTR	35438985	35439089	.	-	.	Parent=Os01t0828400-00
Chr01	irgsp1_rep	five_prime_UTR	35438659	35438814	.	-	.	Parent=Os01t0828400-00
Chr01	irgsp1_rep	CDS	35438570	35438658	.	-	0	Parent=Os01t0828400-00
Chr01	irgsp1_rep	CDS	35438168	35438294	.	-	1	Parent=Os01t0828400-00
Chr01	irgsp1_rep	three_prime_UTR	35438116	35438167	.	-	.	Parent=Os01t0828400-00
Chr01	irgsp1_rep	three_prime_UTR	35436810	35437547	.	-	.	Parent=Os01t0828400-00
Chr01	irgsp1_rep	mRNA	35473695	35474333	.	-	.	ID=Os01t0828900-00;Name=Os01t0828900-00;Locus_id=Os01g0828900;CGSNL Gene Symbol=G1L7;CGSNL Gene Name=G1 LIKE PROTEIN 7;Oryzabase Gene Symbol Synonym(s)=OsG1L7;Note=Similar to predicted protein.;Transcript_evidence=AB512496 (DDBJ%2C Best hit);ORF_evidence=NP_563780.1 (RefSeq);InterPro=Domain of unknown function DUF640 (IPR006936);Oryzabase=8888;TENOR=Os01t0828900-00;KEGG=Os01t0828900-00
Chr01	irgsp1_rep	CDS	35473695	35474333	.	-	0	Parent=Os01t0828900-00
Chr01	irgsp1_rep	mRNA	35477420	35479511	.	+	.	ID=Os01t0829000-01;Name=Os01t0829000-01;Locus_id=Os01g0829000;Note=Thioredoxin-like fold domain containing protein.;Transcript_evidence=AK065327 (DDBJ%2C Best hit);ORF_evidence=B6TC88 (UniProt);InterPro=Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=J013002F09;Expression=AK065327;TENOR=Os01t0829000-01;KEGG=Os01t0829000-01
Chr01	irgsp1_rep	five_prime_UTR	35477420	35477428	.	+	.	Parent=Os01t0829000-01
Chr01	irgsp1_rep	CDS	35477429	35478081	.	+	0	Parent=Os01t0829000-01
Chr01	irgsp1_rep	CDS	35478358	35478442	.	+	1	Parent=Os01t0829000-01
Chr01	irgsp1_rep	CDS	35478536	35478647	.	+	0	Parent=Os01t0829000-01
Chr01	irgsp1_rep	CDS	35478827	35478930	.	+	2	Parent=Os01t0829000-01
Chr01	irgsp1_rep	three_prime_UTR	35478931	35478985	.	+	.	Parent=Os01t0829000-01
Chr01	irgsp1_rep	three_prime_UTR	35479145	35479511	.	+	.	Parent=Os01t0829000-01
Chr01	irgsp1_rep	mRNA	35480071	35482185	.	-	.	ID=Os01t0829100-01;Name=Os01t0829100-01;Locus_id=Os01g0829100;Note=Ankyrin domain containing protein.;Transcript_evidence=AK060644 (DDBJ%2C Best hit);ORF_evidence=A2Z5H4 (UniProt);GO=Molecular Function: structural molecule activity (GO:0005198),Molecular Function: protein binding (GO:0005515);InterPro=Major sperm protein (IPR000535),Ankyrin repeat (IPR002110),PapD-like (IPR008962),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=001-027-G02;Expression=AK060644;TENOR=Os01t0829100-01;KEGG=Os01t0829100-01
Chr01	irgsp1_rep	five_prime_UTR	35482128	35482185	.	-	.	Parent=Os01t0829100-01
Chr01	irgsp1_rep	CDS	35481312	35482127	.	-	0	Parent=Os01t0829100-01
Chr01	irgsp1_rep	CDS	35480265	35480729	.	-	0	Parent=Os01t0829100-01
Chr01	irgsp1_rep	three_prime_UTR	35480071	35480264	.	-	.	Parent=Os01t0829100-01
Chr01	irgsp1_rep	mRNA	35485016	35485074	.	+	.	ID=Os01t0829183-00;Name=Os01t0829183-00;Locus_id=Os01g0829183;Note=Non-protein coding transcript.;Transcript_evidence=X06283 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0829183-00
Chr01	irgsp1_rep	exon	35485016	35485074	.	+	.	Parent=Os01t0829183-00
Chr01	irgsp1_rep	mRNA	35485365	35487088	.	+	.	ID=Os01t0829266-01;Name=Os01t0829266-01;Locus_id=Os01g0829266;Note=Hypothetical conserved gene.;Transcript_evidence=AK241659 (DDBJ%2C Best hit);ORF_evidence=A2XX31 (UniProt);NIAS_FLcDNA=J065191F18;TENOR=Os01t0829266-01;KEGG=Os01t0829266-01
Chr01	irgsp1_rep	five_prime_UTR	35485365	35486811	.	+	.	Parent=Os01t0829266-01
Chr01	irgsp1_rep	CDS	35486812	35487063	.	+	0	Parent=Os01t0829266-01
Chr01	irgsp1_rep	three_prime_UTR	35487064	35487088	.	+	.	Parent=Os01t0829266-01
Chr01	irgsp1_rep	mRNA	35491910	35492921	.	+	.	ID=Os01t0829400-01;Name=Os01t0829400-01;Locus_id=Os01g0829400;Oryzabase Gene Symbol Synonym(s)=OsGRL2;Oryzabase Gene Name Synonym(s)=GRX-like protein 2%2C glutaredoxin-like protein 2;Note=Thioredoxin fold domain containing protein.;Transcript_evidence=AK109566 (DDBJ%2C Best hit);ORF_evidence=NP_001147147.1 (RefSeq);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin (IPR002109),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=002-130-C12;Oryzabase=13592;Expression=AK109566;TENOR=Os01t0829400-01;KEGG=Os01t0829400-01
Chr01	irgsp1_rep	five_prime_UTR	35491910	35491922	.	+	.	Parent=Os01t0829400-01
Chr01	irgsp1_rep	CDS	35491923	35492690	.	+	0	Parent=Os01t0829400-01
Chr01	irgsp1_rep	three_prime_UTR	35492691	35492921	.	+	.	Parent=Os01t0829400-01
Chr01	irgsp1_rep	mRNA	35495952	35496172	.	-	.	ID=Os01t0829500-00;Name=Os01t0829500-00;Locus_id=Os01g0829500;Note=Conserved hypothetical protein.;Transcript_evidence=EU962098 (DDBJ);ORF_evidence=Q941V6 (UniProt);TENOR=Os01t0829500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	35496157	35496172	.	-	.	Parent=Os01t0829500-00
Chr01	irgsp1_rep	CDS	35495965	35496156	.	-	0	Parent=Os01t0829500-00
Chr01	irgsp1_rep	three_prime_UTR	35495952	35495964	.	-	.	Parent=Os01t0829500-00
Chr01	irgsp1_rep	mRNA	35497039	35498413	.	-	.	ID=Os01t0829600-01;Name=Os01t0829600-01;Locus_id=Os01g0829600;Note=Protein of unknown function DUF688 domain containing protein.;Transcript_evidence=AK060725 (DDBJ%2C Best hit);ORF_evidence=Q5QLS4 (UniProt);InterPro=Protein of unknown function DUF688 (IPR007789);NIAS_FLcDNA=001-031-G10;Expression=AK060725;TENOR=Os01t0829600-01;KEGG=Os01t0829600-01
Chr01	irgsp1_rep	five_prime_UTR	35498404	35498413	.	-	.	Parent=Os01t0829600-01
Chr01	irgsp1_rep	CDS	35497216	35498403	.	-	0	Parent=Os01t0829600-01
Chr01	irgsp1_rep	three_prime_UTR	35497039	35497215	.	-	.	Parent=Os01t0829600-01
Chr01	irgsp1_rep	mRNA	35497187	35498546	.	+	.	ID=Os01t0829700-01;Name=Os01t0829700-01;Locus_id=Os01g0829700;Note=Hypothetical protein.;Transcript_evidence=AK109789 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-147-D05;Expression=AK109789;TENOR=Os01t0829700-01;KEGG=Os01t0829700-01
Chr01	irgsp1_rep	five_prime_UTR	35497187	35497255	.	+	.	Parent=Os01t0829700-01
Chr01	irgsp1_rep	CDS	35497256	35497795	.	+	0	Parent=Os01t0829700-01
Chr01	irgsp1_rep	three_prime_UTR	35497796	35498546	.	+	.	Parent=Os01t0829700-01
Chr01	irgsp1_rep	mRNA	35499019	35501744	.	+	.	ID=Os01t0829800-01;Name=Os01t0829800-01;Locus_id=Os01g0829800;RAP-DB Gene Symbol Synonym(s)=OsMDH1;RAP-DB Gene Name Synonym(s)=Malate Dehydrogenase 1;CGSNL Gene Symbol=MDH1;CGSNL Gene Name=MALATE DEHYDROGENASE 1;Oryzabase Gene Symbol Synonym(s)=OsMDH1;Oryzabase Gene Name Synonym(s)=Malate dehydrogenase 1;Note=Malate dehydrogenase%2C Salt stress tolerance;Transcript_evidence=AK101730;ORF_evidence=Q5QLS8;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: tricarboxylic acid cycle (GO:0006099),Biological Process: malate metabolic process (GO:0006108),Biological Process: carboxylic acid metabolic process (GO:0019752),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: malate dehydrogenase activity (GO:0016615),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: L-malate dehydrogenase activity (GO:0030060);InterPro=NAD(P)-binding domain superfamily (IPR036291),Lactate dehydrogenase/glycoside hydrolase%2C family 4%2C C-terminal (IPR015955),L-lactate/malate dehydrogenase (IPR001557),Malate dehydrogenase%2C type 1 (IPR010097),Lactate/malate dehydrogenase%2C N-terminal (IPR001236),Lactate/malate dehydrogenase%2C C-terminal (IPR022383),Malate dehydrogenase%2C active site (IPR001252);NIAS_FLcDNA=J033061G08;Manual Curation=June 5%2C 2019;Literature_PMID=31161713;Oryzabase=23098;Expression=AK101730;TENOR=Os01t0829800-01;KEGG=Os01t0829800-01 (EC:1.1.1.37);Subcellular location=chloroplast (GO:0009507)
Chr01	irgsp1_rep	five_prime_UTR	35499019	35499322	.	+	.	Parent=Os01t0829800-01
Chr01	irgsp1_rep	five_prime_UTR	35500310	35500315	.	+	.	Parent=Os01t0829800-01
Chr01	irgsp1_rep	CDS	35500316	35501506	.	+	0	Parent=Os01t0829800-01
Chr01	irgsp1_rep	three_prime_UTR	35501507	35501744	.	+	.	Parent=Os01t0829800-01
Chr01	irgsp1_rep	mRNA	35499136	35501745	.	+	.	ID=Os01t0829800-02;Name=Os01t0829800-02;Locus_id=Os01g0829800;CGSNL Gene Symbol=MDH1;CGSNL Gene Name=MALATE DEHYDROGENASE 1;Oryzabase Gene Symbol Synonym(s)=OsMDH1;Oryzabase Gene Name Synonym(s)=Malate dehydrogenase 1;Note=Similar to Malate dehydrogenase precursor (EC 1.1.1.37).;Transcript_evidence=AK058753 (DDBJ%2C Best hit);ORF_evidence=A2WWL6 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: malate metabolic process (GO:0006108),Biological Process: cellular carbohydrate metabolic process (GO:0044262),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: malate dehydrogenase activity (GO:0016615),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: L-malate dehydrogenase activity (GO:0030060);InterPro=Lactate/malate dehydrogenase%2C N-terminal (IPR001236),Malate dehydrogenase%2C active site (IPR001252),L-lactate/malate dehydrogenase (IPR001557),Malate dehydrogenase%2C type 1 (IPR010097),Lactate dehydrogenase/glycoside hydrolase%2C family 4%2C C-terminal (IPR015955),NAD(P)-binding domain (IPR016040),Lactate/malate dehydrogenase%2C C-terminal (IPR022383);NIAS_FLcDNA=001-019-H12;Oryzabase=23098;Expression=AK058753;TENOR=Os01t0829800-02;KEGG=Os01t0829800-02 (EC:1.1.1.37)
Chr01	irgsp1_rep	five_prime_UTR	35499136	35499322	.	+	.	Parent=Os01t0829800-02
Chr01	irgsp1_rep	five_prime_UTR	35500310	35500315	.	+	.	Parent=Os01t0829800-02
Chr01	irgsp1_rep	CDS	35500316	35501506	.	+	0	Parent=Os01t0829800-02
Chr01	irgsp1_rep	three_prime_UTR	35501507	35501745	.	+	.	Parent=Os01t0829800-02
Chr01	irgsp1_rep	mRNA	35501996	35505052	.	-	.	ID=Os01t0829900-01;Name=Os01t0829900-01;Locus_id=Os01g0829900;RAP-DB Gene Symbol Synonym(s)=YSL18%2C OsYSL18%2C OsYs2;RAP-DB Gene Name Synonym(s)=YELLOW STRIP-LIKE GENE 18%2C rice YSL (yellow stripe-like) gene 18%2C Probable metal-nicotianamine transporter YSL18%2C Protein YELLOW STRIPE LIKE 18%2C yellow stripe 1-like transporter 18;CGSNL Gene Symbol=YSL18;CGSNL Gene Name=YELLOW STRIP-LIKE GENE 18;Oryzabase Gene Symbol Synonym(s)=OsYSL18%2C OsYs2;Oryzabase Gene Name Synonym(s)=rice YSL (yellow stripe-like) gene 18%2C Probable metal-nicotianamine transporter YSL18%2C Protein YELLOW STRIPE LIKE 18%2C yellow stripe 1-like transporter 18;Note=Iron(III)-deoxymugineic acid transporter%2C Translocation of iron in reproductive organs and phloem in joints;Transcript_evidence=AB190926,AK070618;ORF_evidence=Q941V3;GO=Biological Process: transmembrane transport (GO:0055085);InterPro=Oligopeptide transporter%2C OPT superfamily (IPR004813);NIAS_FLcDNA=J023063A19;Manual Curation=June 23%2C 2014;Literature_PMID=19468840;Oryzabase=8359;TENOR=Os01t0829900-01;KEGG=Os01t0829900-01
Chr01	irgsp1_rep	five_prime_UTR	35504760	35505052	.	-	.	Parent=Os01t0829900-01
Chr01	irgsp1_rep	CDS	35504426	35504759	.	-	0	Parent=Os01t0829900-01
Chr01	irgsp1_rep	CDS	35504148	35504314	.	-	2	Parent=Os01t0829900-01
Chr01	irgsp1_rep	CDS	35503949	35504046	.	-	0	Parent=Os01t0829900-01
Chr01	irgsp1_rep	CDS	35503729	35503863	.	-	1	Parent=Os01t0829900-01
Chr01	irgsp1_rep	CDS	35503391	35503580	.	-	1	Parent=Os01t0829900-01
Chr01	irgsp1_rep	CDS	35502168	35503283	.	-	0	Parent=Os01t0829900-01
Chr01	irgsp1_rep	three_prime_UTR	35501996	35502167	.	-	.	Parent=Os01t0829900-01
Chr01	irgsp1_rep	mRNA	35505513	35508520	.	-	.	ID=Os01t0830000-01;Name=Os01t0830000-01;Locus_id=Os01g0830000;CGSNL Gene Symbol=ABCI5;CGSNL Gene Name=ABC TRANSPORTER I FAMILY MEMBER 5;Oryzabase Gene Symbol Synonym(s)=OsABCI5%2C OsISC16;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCI subgroup member 5%2C Iron-sulfur cluster protein 16;Note=Similar to Plastid sufB (Fragment).;Transcript_evidence=AK121100 (DDBJ%2C Best hit);ORF_evidence=A2WWL8 (UniProt);GO=Biological Process: iron-sulfur cluster assembly (GO:0016226);InterPro=SUF system FeS cluster assembly%2C SufBD (IPR000825),SUF system FeS cluster assembly%2C SufB (IPR010231);NIAS_FLcDNA=J023069G03;Oryzabase=12029;Expression=AK121100;TENOR=Os01t0830000-01;KEGG=Os01t0830000-01
Chr01	irgsp1_rep	five_prime_UTR	35508476	35508520	.	-	.	Parent=Os01t0830000-01
Chr01	irgsp1_rep	CDS	35507060	35508475	.	-	0	Parent=Os01t0830000-01
Chr01	irgsp1_rep	CDS	35505810	35506028	.	-	0	Parent=Os01t0830000-01
Chr01	irgsp1_rep	three_prime_UTR	35505513	35505809	.	-	.	Parent=Os01t0830000-01
Chr01	irgsp1_rep	mRNA	35508869	35512813	.	+	.	ID=Os01t0830100-01;Name=Os01t0830100-01;Locus_id=Os01g0830100;Note=Pyridine nucleotide-disulphide oxidoreductase%2C NAD-binding region domain containing protein.;Transcript_evidence=AK069755 (DDBJ%2C Best hit);ORF_evidence=XP_002881079.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Pyridine nucleotide-disulphide oxidoreductase%2C NAD-binding domain (IPR001327),FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR013027),Pyridine nucleotide-disulphide oxidoreductase%2C FAD/NAD(P)-binding domain (IPR023753);NIAS_FLcDNA=J023030K24;Expression=AK069755;TENOR=Os01t0830100-01;KEGG=Os01t0830100-01 (EC:1.6.99.3)
Chr01	irgsp1_rep	five_prime_UTR	35508869	35509050	.	+	.	Parent=Os01t0830100-01
Chr01	irgsp1_rep	CDS	35509051	35509494	.	+	0	Parent=Os01t0830100-01
Chr01	irgsp1_rep	CDS	35510202	35510418	.	+	0	Parent=Os01t0830100-01
Chr01	irgsp1_rep	CDS	35510764	35510924	.	+	2	Parent=Os01t0830100-01
Chr01	irgsp1_rep	CDS	35511003	35511068	.	+	0	Parent=Os01t0830100-01
Chr01	irgsp1_rep	CDS	35511215	35511378	.	+	0	Parent=Os01t0830100-01
Chr01	irgsp1_rep	CDS	35511655	35511769	.	+	1	Parent=Os01t0830100-01
Chr01	irgsp1_rep	CDS	35512526	35512729	.	+	0	Parent=Os01t0830100-01
Chr01	irgsp1_rep	three_prime_UTR	35512730	35512813	.	+	.	Parent=Os01t0830100-01
Chr01	irgsp1_rep	mRNA	35508976	35513088	.	+	.	ID=Os01t0830100-02;Name=Os01t0830100-02;Locus_id=Os01g0830100;Note=Similar to ATNDI1/NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1)%3B NADH dehydrogenase.;Transcript_evidence=AK066279 (DDBJ%2C Best hit);ORF_evidence=NP_563783.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Pyridine nucleotide-disulphide oxidoreductase%2C FAD/NAD(P)-binding domain (IPR023753);NIAS_FLcDNA=J013062I18;Expression=AK066279;TENOR=Os01t0830100-02;KEGG=Os01t0830100-02 (EC:1.6.99.3)
Chr01	irgsp1_rep	five_prime_UTR	35508976	35509050	.	+	.	Parent=Os01t0830100-02
Chr01	irgsp1_rep	CDS	35509051	35509494	.	+	0	Parent=Os01t0830100-02
Chr01	irgsp1_rep	CDS	35510202	35510474	.	+	0	Parent=Os01t0830100-02
Chr01	irgsp1_rep	three_prime_UTR	35510475	35511068	.	+	.	Parent=Os01t0830100-02
Chr01	irgsp1_rep	three_prime_UTR	35511215	35511769	.	+	.	Parent=Os01t0830100-02
Chr01	irgsp1_rep	three_prime_UTR	35512526	35513088	.	+	.	Parent=Os01t0830100-02
Chr01	irgsp1_rep	mRNA	35514139	35517546	.	-	.	ID=Os01t0830200-01;Name=Os01t0830200-01;Locus_id=Os01g0830200;CGSNL Gene Symbol=DLN24;CGSNL Gene Name=DLN REPRESSOR 24;Oryzabase Gene Symbol Synonym(s)=OsRFP%2C OsDLN24;Oryzabase Gene Name Synonym(s)=RING finger protein%2C DLN repressor 24%2C DLN motif protein 24;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK099788 (DDBJ%2C Best hit),AK069312 (DDBJ%2C Best hit),AK073766 (DDBJ%2C Best hit);ORF_evidence=B6UIK4 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J013097A17,J023010E11,J033069D23;Oryzabase=21160;Expression=AK099788;TENOR=Os01t0830200-01;KEGG=Os01t0830200-01
Chr01	irgsp1_rep	five_prime_UTR	35517269	35517546	.	-	.	Parent=Os01t0830200-01
Chr01	irgsp1_rep	CDS	35515583	35517268	.	-	0	Parent=Os01t0830200-01
Chr01	irgsp1_rep	three_prime_UTR	35514139	35515582	.	-	.	Parent=Os01t0830200-01
Chr01	irgsp1_rep	mRNA	35518678	35518983	.	-	.	ID=Os01t0830300-01;Name=Os01t0830300-01;Locus_id=Os01g0830300;Note=Non-protein coding transcript.;Transcript_evidence=AK058951 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-020-A09;TENOR=Os01t0830300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	exon	35518678	35518983	.	-	.	Parent=Os01t0830300-01
Chr01	irgsp1_rep	mRNA	35525560	35527592	.	-	.	ID=Os01t0830500-01;Name=Os01t0830500-01;Locus_id=Os01g0830500;Oryzabase Gene Symbol Synonym(s)=Os2OG-Fe (II) oxy%2C 2OG-Fe (II) oxy;Oryzabase Gene Name Synonym(s)=2OG-Fe (II) oxygenase domain containing protein%2C 2OG-Fe (II) oxygenase family protein;Note=2OG-Fe(II) oxygenase domain containing protein.;Transcript_evidence=AK105801 (DDBJ%2C Best hit),AK061475 (DDBJ%2C Best hit);ORF_evidence=A2WWM2 (UniProt);NIAS_FLcDNA=001-203-A11,006-308-F05;Oryzabase=21333;TENOR=Os01t0830500-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	35527487	35527592	.	-	.	Parent=Os01t0830500-01
Chr01	irgsp1_rep	CDS	35526617	35527486	.	-	0	Parent=Os01t0830500-01
Chr01	irgsp1_rep	CDS	35525722	35526036	.	-	0	Parent=Os01t0830500-01
Chr01	irgsp1_rep	three_prime_UTR	35525560	35525721	.	-	.	Parent=Os01t0830500-01
Chr01	irgsp1_rep	mRNA	35538475	35544326	.	+	.	ID=Os01t0830700-01;Name=Os01t0830700-01;Locus_id=Os01g0830700;CGSNL Gene Symbol=XOAT1;CGSNL Gene Name=XYLAN O-ACETYLTRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=OsTBL12%2C TBL12%2C OsXOAT1;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 12%2C xylan O-acetyltransferase 1;Note=Protein of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=AK101671 (DDBJ%2C Best hit);ORF_evidence=NP_191158.1 (RefSeq);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=J033058D09;Oryzabase=21467;Expression=AK101671;TENOR=Os01t0830700-01;KEGG=Os01t0830700-01
Chr01	irgsp1_rep	five_prime_UTR	35538475	35538580	.	+	.	Parent=Os01t0830700-01
Chr01	irgsp1_rep	CDS	35538581	35539257	.	+	0	Parent=Os01t0830700-01
Chr01	irgsp1_rep	CDS	35539406	35539577	.	+	1	Parent=Os01t0830700-01
Chr01	irgsp1_rep	CDS	35539899	35540098	.	+	0	Parent=Os01t0830700-01
Chr01	irgsp1_rep	CDS	35540208	35540363	.	+	1	Parent=Os01t0830700-01
Chr01	irgsp1_rep	CDS	35543619	35543982	.	+	1	Parent=Os01t0830700-01
Chr01	irgsp1_rep	three_prime_UTR	35543983	35544326	.	+	.	Parent=Os01t0830700-01
Chr01	irgsp1_rep	mRNA	35538516	35544313	.	+	.	ID=Os01t0830700-02;Name=Os01t0830700-02;Locus_id=Os01g0830700;CGSNL Gene Symbol=XOAT1;CGSNL Gene Name=XYLAN O-ACETYLTRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=OsTBL12%2C TBL12%2C OsXOAT1;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 12%2C xylan O-acetyltransferase 1;Note=Protein of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=AK105654 (DDBJ%2C Best hit);ORF_evidence=NP_191158.1 (RefSeq);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=001-200-G05;Oryzabase=21467;Expression=AK105654;TENOR=Os01t0830700-02;KEGG=Os01t0830700-02
Chr01	irgsp1_rep	five_prime_UTR	35538516	35538580	.	+	.	Parent=Os01t0830700-02
Chr01	irgsp1_rep	CDS	35538581	35539257	.	+	0	Parent=Os01t0830700-02
Chr01	irgsp1_rep	CDS	35539406	35539577	.	+	1	Parent=Os01t0830700-02
Chr01	irgsp1_rep	CDS	35539899	35540098	.	+	0	Parent=Os01t0830700-02
Chr01	irgsp1_rep	CDS	35540208	35540363	.	+	1	Parent=Os01t0830700-02
Chr01	irgsp1_rep	CDS	35543619	35543982	.	+	1	Parent=Os01t0830700-02
Chr01	irgsp1_rep	three_prime_UTR	35543983	35544313	.	+	.	Parent=Os01t0830700-02
Chr01	irgsp1_rep	mRNA	35547688	35548473	.	-	.	ID=Os01t0830900-00;Name=Os01t0830900-00;Locus_id=Os01g0830900;Note=Hypothetical conserved gene.;Transcript_evidence=AK336099 (DDBJ);ORF_evidence=Q8S236 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os01t0830900-00;KEGG=Os01t0830900-00
Chr01	irgsp1_rep	five_prime_UTR	35548471	35548473	.	-	.	Parent=Os01t0830900-00
Chr01	irgsp1_rep	CDS	35547901	35548470	.	-	0	Parent=Os01t0830900-00
Chr01	irgsp1_rep	three_prime_UTR	35547688	35547900	.	-	.	Parent=Os01t0830900-00
Chr01	irgsp1_rep	mRNA	35558148	35559225	.	+	.	ID=Os01t0831000-01;Name=Os01t0831000-01;Locus_id=Os01g0831000;RAP-DB Gene Symbol Synonym(s)=LAX1%2C lax%2C lax(lx)%2C LAX1%2C lx%2C OsbHLH123;RAP-DB Gene Name Synonym(s)=LAX PANICLE 1%2C lax panicle%2C Transcription factor LAX PANICLE%2C lax panicle1%2C basic helix-loop-helix protein 123%2C LAX PANICLE1;CGSNL Gene Symbol=LAX1;CGSNL Gene Name=LAX PANICLE 1;Oryzabase Gene Symbol Synonym(s)=lax%2C lax(lx)%2C LAX1%2C lx%2C OsbHLH123%2C OsLAX1;Oryzabase Gene Name Synonym(s)=lax panicle%2C Transcription factor LAX PANICLE%2C lax panicle1%2C basic helix-loop-helix protein 123%2C LAX PANICLE1;Note=Basic helix-loop-helix (bHLH) transcription factor%2C Axillary meristem formation;Transcript_evidence=AB115668 (Genbank);ORF_evidence=Q7XAQ6 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);Manual Curation=June 1%2C 2009;Literature_PMID=13130077,19346465;Oryzabase=477;Expression=AB115668;TENOR=Os01t0831000-01
Chr01	irgsp1_rep	five_prime_UTR	35558148	35558262	.	+	.	Parent=Os01t0831000-01
Chr01	irgsp1_rep	CDS	35558263	35558910	.	+	0	Parent=Os01t0831000-01
Chr01	irgsp1_rep	three_prime_UTR	35558911	35559225	.	+	.	Parent=Os01t0831000-01
Chr01	irgsp1_rep	mRNA	35582280	35585575	.	+	.	ID=Os01t0831200-01;Name=Os01t0831200-01;Locus_id=Os01g0831200;RAP-DB Gene Symbol Synonym(s)=OsBAG4%2C EIP1;RAP-DB Gene Name Synonym(s)=Bcl-2-associated athanogene 4;CGSNL Gene Symbol=BAG4;CGSNL Gene Name=BCL-2-ASSOCIATED ATHANOGENE 4;Oryzabase Gene Symbol Synonym(s)=OsBAG4%2C EIP1;Oryzabase Gene Name Synonym(s)=Bcl-2-associated athanogene 4%2C EBR1-interacting protein 1;Note=BAG family protein%2C Control of innate immunity and broad-spectrum disease resistance;Transcript_evidence=AK070208;ORF_evidence=Q5N9K2;GO=Molecular Function: protein binding (GO:0005515),Molecular Function: chaperone binding (GO:0051087);InterPro=Ubiquitin-like domain superfamily (IPR029071),BAG domain superfamily (IPR036533),Ubiquitin domain (IPR000626),BAG domain (IPR003103);NIAS_FLcDNA=J023047C12;Manual Curation=December 23%2C 2019;Literature_PMID=27978435;Oryzabase=11552;Expression=AK070208;TENOR=Os01t0831200-01;KEGG=Os01t0831200-01
Chr01	irgsp1_rep	five_prime_UTR	35582280	35582580	.	+	.	Parent=Os01t0831200-01
Chr01	irgsp1_rep	CDS	35582581	35582761	.	+	0	Parent=Os01t0831200-01
Chr01	irgsp1_rep	CDS	35583624	35583886	.	+	2	Parent=Os01t0831200-01
Chr01	irgsp1_rep	CDS	35583982	35584128	.	+	0	Parent=Os01t0831200-01
Chr01	irgsp1_rep	CDS	35585310	35585507	.	+	0	Parent=Os01t0831200-01
Chr01	irgsp1_rep	three_prime_UTR	35585508	35585575	.	+	.	Parent=Os01t0831200-01
Chr01	irgsp1_rep	mRNA	35586264	35588352	.	+	.	ID=Os01t0831250-00;Name=Os01t0831250-00;Locus_id=Os01g0831250;Note=Hypothetical gene.;Transcript_evidence=BT054429 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0831250-00
Chr01	irgsp1_rep	five_prime_UTR	35586264	35586731	.	+	.	Parent=Os01t0831250-00
Chr01	irgsp1_rep	five_prime_UTR	35586817	35586901	.	+	.	Parent=Os01t0831250-00
Chr01	irgsp1_rep	CDS	35586902	35587175	.	+	0	Parent=Os01t0831250-00
Chr01	irgsp1_rep	CDS	35587731	35588352	.	+	2	Parent=Os01t0831250-00
Chr01	irgsp1_rep	mRNA	35587306	35588445	.	-	.	ID=Os01t0831300-01;Name=Os01t0831300-01;Locus_id=Os01g0831300;CGSNL Gene Symbol=AMT2%3B2;CGSNL Gene Name=AMMONIUM TRANSPORTER 2%3B2;Oryzabase Gene Symbol Synonym(s)=OsAMT2%3B2%2C AMT2%3B2%2C OsAMT2.2;Oryzabase Gene Name Synonym(s)=Ammonium transporter 2 member 2%2C AMMONIUM TRANSPORTER 2%3B2;Note=Similar to Ammonium transporter.;Transcript_evidence=AK109023 (DDBJ%2C Best hit);ORF_evidence=Q8S233 (UniProt);GO=Biological Process: ammonium transmembrane transport (GO:0072488),Cellular Component: membrane (GO:0016020),Molecular Function: ammonium transmembrane transporter activity (GO:0008519);InterPro=Ammonium transporter (IPR001905),Ammonium transporter AmtB-like (IPR024041);NIAS_FLcDNA=002-154-B03;Oryzabase=9302;Expression=AK109023;TENOR=Os01t0831300-01;KEGG=Os01t0831300-01
Chr01	irgsp1_rep	five_prime_UTR	35588378	35588445	.	-	.	Parent=Os01t0831300-01
Chr01	irgsp1_rep	CDS	35587718	35588377	.	-	0	Parent=Os01t0831300-01
Chr01	irgsp1_rep	three_prime_UTR	35587306	35587717	.	-	.	Parent=Os01t0831300-01
Chr01	irgsp1_rep	mRNA	35594900	35595772	.	+	.	ID=Os01t0831800-00;Name=Os01t0831800-00;Locus_id=Os01g0831800;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0050l02 (Wheat FLcDNA);ORF_evidence=B9EUA2 (UniProt);TENOR=Os01t0831800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	35594900	35594938	.	+	.	Parent=Os01t0831800-00
Chr01	irgsp1_rep	CDS	35594939	35595772	.	+	0	Parent=Os01t0831800-00
Chr01	irgsp1_rep	mRNA	35597122	35599018	.	-	.	ID=Os01t0831900-01;Name=Os01t0831900-01;Locus_id=Os01g0831900;CGSNL Gene Symbol=AMT2%3B3;CGSNL Gene Name=AMMONIUM TRANSPORTER 2%3B3;Oryzabase Gene Symbol Synonym(s)=OsAMT2%3B3%2C AMT2%3B3%2C OsAMT2.3;Oryzabase Gene Name Synonym(s)=Ammonium transporter 2 member 3%2C AMMONIUM TRANSPORTER 2%3B3;Note=Similar to Ammonium transporter.;Transcript_evidence=AK102106 (DDBJ%2C Best hit);ORF_evidence=Q8S230 (UniProt);GO=Biological Process: ammonium transmembrane transport (GO:0072488),Cellular Component: membrane (GO:0016020),Molecular Function: ammonium transmembrane transporter activity (GO:0008519);InterPro=Ammonium transporter (IPR001905),Blood group Rhesus C/E/D polypeptide (IPR002229),Ammonium transporter%2C conserved site (IPR018047),Ammonium transporter AmtB-like (IPR024041);NIAS_FLcDNA=J033084D13;Oryzabase=9303;Expression=AK102106;TENOR=Os01t0831900-01;KEGG=Os01t0831900-01
Chr01	irgsp1_rep	five_prime_UTR	35598969	35599018	.	-	.	Parent=Os01t0831900-01
Chr01	irgsp1_rep	CDS	35598306	35598968	.	-	0	Parent=Os01t0831900-01
Chr01	irgsp1_rep	CDS	35597927	35598212	.	-	0	Parent=Os01t0831900-01
Chr01	irgsp1_rep	CDS	35597285	35597841	.	-	2	Parent=Os01t0831900-01
Chr01	irgsp1_rep	three_prime_UTR	35597122	35597284	.	-	.	Parent=Os01t0831900-01
Chr01	irgsp1_rep	mRNA	35597093	35598956	.	-	.	ID=Os01t0831900-02;Name=Os01t0831900-02;Locus_id=Os01g0831900;CGSNL Gene Symbol=AMT2%3B3;CGSNL Gene Name=AMMONIUM TRANSPORTER 2%3B3;Oryzabase Gene Symbol Synonym(s)=OsAMT2%3B3%2C AMT2%3B3%2C OsAMT2.3;Oryzabase Gene Name Synonym(s)=Ammonium transporter 2 member 3%2C AMMONIUM TRANSPORTER 2%3B3;Note=Similar to Ammonium transporter.;Transcript_evidence=AK063959 (DDBJ%2C Best hit);ORF_evidence=Q8S230 (UniProt);GO=Biological Process: ammonium transmembrane transport (GO:0072488),Cellular Component: membrane (GO:0016020),Molecular Function: ammonium transmembrane transporter activity (GO:0008519);InterPro=Ammonium transporter (IPR001905),Blood group Rhesus C/E/D polypeptide (IPR002229),Ammonium transporter%2C conserved site (IPR018047),Ammonium transporter AmtB-like (IPR024041);NIAS_FLcDNA=001-123-G04;Oryzabase=9303;Expression=AK063959;TENOR=Os01t0831900-02;KEGG=Os01t0831900-02
Chr01	irgsp1_rep	CDS	35598306	35598956	.	-	0	Parent=Os01t0831900-02
Chr01	irgsp1_rep	CDS	35597927	35598212	.	-	0	Parent=Os01t0831900-02
Chr01	irgsp1_rep	CDS	35597285	35597841	.	-	2	Parent=Os01t0831900-02
Chr01	irgsp1_rep	three_prime_UTR	35597093	35597284	.	-	.	Parent=Os01t0831900-02
Chr01	irgsp1_rep	mRNA	35597399	35599031	.	+	.	ID=Os01t0831950-00;Name=Os01t0831950-00;Locus_id=Os01g0831950;Note=Hypothetical protein.;Transcript_evidence=BT054429 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0831950-00
Chr01	irgsp1_rep	five_prime_UTR	35597399	35597940	.	+	.	Parent=Os01t0831950-00
Chr01	irgsp1_rep	CDS	35597941	35598214	.	+	0	Parent=Os01t0831950-00
Chr01	irgsp1_rep	CDS	35598310	35598962	.	+	2	Parent=Os01t0831950-00
Chr01	irgsp1_rep	three_prime_UTR	35598963	35599031	.	+	.	Parent=Os01t0831950-00
Chr01	irgsp1_rep	mRNA	35601142	35604029	.	-	.	ID=Os01t0832000-01;Name=Os01t0832000-01;Locus_id=Os01g0832000;RAP-DB Gene Symbol Synonym(s)=CDS5%2C OsCDS5;RAP-DB Gene Name Synonym(s)=Cytidinediphosphate diacylglycerol synthase 5;CGSNL Gene Symbol=CDS5;CGSNL Gene Name=CYTIDINEDIPHOSPHATE-DIACYLGLYCEROL SYNTHASE 5;Oryzabase Gene Symbol Synonym(s)=OsCDS5;Oryzabase Gene Name Synonym(s)=Cytidinediphosphate-diacylglycerol synthase 5;Note=Cytidinediphosphate diacylglycerol synthase%2C Phospholipid homeostasis%2C Negative role in hyperosmotic stress tolerance;Transcript_evidence=AK061265 (truncated),Inferred from literature;ORF_evidence=Q5N9J9;NIAS_FLcDNA=006-212-C06 (truncated);Manual Curation=June 14%2C 2018;Literature_PMID=29604140;Oryzabase=22471;Expression=AK061265;TENOR=Os01t0832000-01;KEGG=Os01t0832000-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=chloroplast (GO:0009507), endoplasmic reticulum (GO:0005783)
Chr01	irgsp1_rep	five_prime_UTR	35603987	35604029	.	-	.	Parent=Os01t0832000-01
Chr01	irgsp1_rep	CDS	35603681	35603986	.	-	0	Parent=Os01t0832000-01
Chr01	irgsp1_rep	CDS	35602277	35602344	.	-	0	Parent=Os01t0832000-01
Chr01	irgsp1_rep	CDS	35602073	35602204	.	-	1	Parent=Os01t0832000-01
Chr01	irgsp1_rep	CDS	35601726	35601841	.	-	1	Parent=Os01t0832000-01
Chr01	irgsp1_rep	CDS	35601506	35601620	.	-	2	Parent=Os01t0832000-01
Chr01	irgsp1_rep	CDS	35601251	35601428	.	-	1	Parent=Os01t0832000-01
Chr01	irgsp1_rep	three_prime_UTR	35601142	35601250	.	-	.	Parent=Os01t0832000-01
Chr01	irgsp1_rep	mRNA	35605705	35607771	.	+	.	ID=Os01t0832100-01;Name=Os01t0832100-01;Locus_id=Os01g0832100;CGSNL Gene Symbol=GELP27;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 27;Oryzabase Gene Symbol Synonym(s)=OsGELP27;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 27;Note=Esterase%2C SGNH hydrolase-type domain containing protein.;Transcript_evidence=AK064727 (DDBJ%2C Best hit);ORF_evidence=NP_001150904.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087),Esterase%2C SGNH hydrolase-type (IPR013830),Esterase%2C SGNH hydrolase-type%2C subgroup (IPR013831);NIAS_FLcDNA=002-120-A02;Oryzabase=10977;Expression=AK064727;TENOR=Os01t0832100-01;KEGG=Os01t0832100-01
Chr01	irgsp1_rep	five_prime_UTR	35605705	35605748	.	+	.	Parent=Os01t0832100-01
Chr01	irgsp1_rep	CDS	35605749	35606381	.	+	0	Parent=Os01t0832100-01
Chr01	irgsp1_rep	CDS	35606951	35607218	.	+	0	Parent=Os01t0832100-01
Chr01	irgsp1_rep	CDS	35607336	35607529	.	+	2	Parent=Os01t0832100-01
Chr01	irgsp1_rep	three_prime_UTR	35607530	35607771	.	+	.	Parent=Os01t0832100-01
Chr01	irgsp1_rep	mRNA	35609621	35613094	.	-	.	ID=Os01t0832200-01;Name=Os01t0832200-01;Locus_id=Os01g0832200;Note=Similar to selT-like protein.;Transcript_evidence=AK060017 (DDBJ%2C Best hit);ORF_evidence=NP_001151493.1 (RefSeq);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: selenium binding (GO:0008430);InterPro=Selenoprotein%2C Rdx type (IPR011893),Thioredoxin-like fold (IPR012336),Selenoprotein T (IPR019389);NIAS_FLcDNA=006-302-G02;Expression=AK060017;TENOR=Os01t0832200-01;KEGG=Os01t0832200-01
Chr01	irgsp1_rep	five_prime_UTR	35613012	35613094	.	-	.	Parent=Os01t0832200-01
Chr01	irgsp1_rep	CDS	35612817	35613011	.	-	0	Parent=Os01t0832200-01
Chr01	irgsp1_rep	CDS	35612639	35612709	.	-	0	Parent=Os01t0832200-01
Chr01	irgsp1_rep	CDS	35611015	35611330	.	-	1	Parent=Os01t0832200-01
Chr01	irgsp1_rep	CDS	35609915	35610031	.	-	0	Parent=Os01t0832200-01
Chr01	irgsp1_rep	three_prime_UTR	35609621	35609914	.	-	.	Parent=Os01t0832200-01
Chr01	irgsp1_rep	mRNA	35609621	35613093	.	-	.	ID=Os01t0832200-02;Name=Os01t0832200-02;Locus_id=Os01g0832200;Note=Similar to selT-like protein.;Transcript_evidence=AK068980 (DDBJ%2C Best hit);ORF_evidence=NP_001151493.1 (RefSeq);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: selenium binding (GO:0008430);InterPro=Selenoprotein T (IPR019389);NIAS_FLcDNA=J023002I10;Expression=AK068980;TENOR=Os01t0832200-02;KEGG=Os01t0832200-02
Chr01	irgsp1_rep	five_prime_UTR	35613012	35613093	.	-	.	Parent=Os01t0832200-02
Chr01	irgsp1_rep	CDS	35612817	35613011	.	-	0	Parent=Os01t0832200-02
Chr01	irgsp1_rep	CDS	35612639	35612709	.	-	0	Parent=Os01t0832200-02
Chr01	irgsp1_rep	CDS	35611284	35611330	.	-	1	Parent=Os01t0832200-02
Chr01	irgsp1_rep	CDS	35611015	35611159	.	-	2	Parent=Os01t0832200-02
Chr01	irgsp1_rep	CDS	35609908	35610031	.	-	1	Parent=Os01t0832200-02
Chr01	irgsp1_rep	three_prime_UTR	35609621	35609907	.	-	.	Parent=Os01t0832200-02
Chr01	irgsp1_rep	mRNA	35619733	35625793	.	+	.	ID=Os01t0832300-00;Name=Os01t0832300-00;Locus_id=Os01g0832300;CGSNL Gene Symbol=CDPK3;CGSNL Gene Name=CALCIUM-DEPENDENT PROTEIN KINASE 3;Oryzabase Gene Symbol Synonym(s)=OsCDPK3%2C OsCPK3;Oryzabase Gene Name Synonym(s)=calcium-dependent protein kinase;Note=Similar to Calcium-dependent protein kinase.;Transcript_evidence=CT830619 (DDBJ%2C Best hit);ORF_evidence=B2KTA1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Calcium-binding EF-hand (IPR002048),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),EF-hand-like domain (IPR011992),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);Oryzabase=8057;TENOR=Os01t0832300-00;KEGG=Os01t0832300-00 (EC:2.7.11.17)
Chr01	irgsp1_rep	five_prime_UTR	35619733	35619863	.	+	.	Parent=Os01t0832300-00
Chr01	irgsp1_rep	CDS	35619864	35620557	.	+	0	Parent=Os01t0832300-00
Chr01	irgsp1_rep	CDS	35622550	35622693	.	+	2	Parent=Os01t0832300-00
Chr01	irgsp1_rep	CDS	35622773	35622925	.	+	2	Parent=Os01t0832300-00
Chr01	irgsp1_rep	CDS	35623313	35623428	.	+	2	Parent=Os01t0832300-00
Chr01	irgsp1_rep	CDS	35623541	35623708	.	+	0	Parent=Os01t0832300-00
Chr01	irgsp1_rep	CDS	35625019	35625249	.	+	0	Parent=Os01t0832300-00
Chr01	irgsp1_rep	CDS	35625341	35625490	.	+	0	Parent=Os01t0832300-00
Chr01	irgsp1_rep	three_prime_UTR	35625491	35625793	.	+	.	Parent=Os01t0832300-00
Chr01	irgsp1_rep	mRNA	35619952	35620559	.	-	.	ID=Os01t0832450-00;Name=Os01t0832450-00;Locus_id=Os01g0832450;Note=Hypothetical protein.;Transcript_evidence=BT084847 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0832450-00
Chr01	irgsp1_rep	CDS	35619952	35620559	.	-	0	Parent=Os01t0832450-00
Chr01	irgsp1_rep	mRNA	35636303	35640933	.	+	.	ID=Os01t0832600-01;Name=Os01t0832600-01;Locus_id=Os01g0832600;CGSNL Gene Symbol=2ODD5;CGSNL Gene Name=2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 5;Oryzabase Gene Symbol Synonym(s)=2-ODD5%2C Os2-ODD5%2C Os2ODD5;Oryzabase Gene Name Synonym(s)=2-oxoglutarate-dependent dioxygenase 5;Note=Similar to Leucoanthocyanidin dioxygenase-like protein.;Transcript_evidence=AK106774 (DDBJ%2C Best hit);ORF_evidence=B5M6A0 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Isopenicillin N synthase (IPR002283),Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=002-115-G04;Oryzabase=22613;Expression=AK106774;TENOR=Os01t0832600-01;KEGG=Os01t0832600-01
Chr01	irgsp1_rep	five_prime_UTR	35636303	35636410	.	+	.	Parent=Os01t0832600-01
Chr01	irgsp1_rep	five_prime_UTR	35636866	35636886	.	+	.	Parent=Os01t0832600-01
Chr01	irgsp1_rep	CDS	35636887	35637383	.	+	0	Parent=Os01t0832600-01
Chr01	irgsp1_rep	CDS	35639358	35639691	.	+	1	Parent=Os01t0832600-01
Chr01	irgsp1_rep	CDS	35640381	35640650	.	+	0	Parent=Os01t0832600-01
Chr01	irgsp1_rep	three_prime_UTR	35640651	35640933	.	+	.	Parent=Os01t0832600-01
Chr01	irgsp1_rep	mRNA	35653186	35658307	.	+	.	ID=Os01t0832900-01;Name=Os01t0832900-01;Locus_id=Os01g0832900;Oryzabase Gene Symbol Synonym(s)=OsSTK1;Oryzabase Gene Name Synonym(s)=serine/threonine kinase 1;Note=Similar to ATP binding protein.;Transcript_evidence=AK068489 (DDBJ%2C Best hit);ORF_evidence=NP_001148168.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013155B12;Oryzabase=18221;TENOR=Os01t0832900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	35653186	35653387	.	+	.	Parent=Os01t0832900-01
Chr01	irgsp1_rep	CDS	35653388	35653673	.	+	0	Parent=Os01t0832900-01
Chr01	irgsp1_rep	CDS	35654074	35654691	.	+	2	Parent=Os01t0832900-01
Chr01	irgsp1_rep	CDS	35655473	35655773	.	+	2	Parent=Os01t0832900-01
Chr01	irgsp1_rep	CDS	35655878	35656157	.	+	1	Parent=Os01t0832900-01
Chr01	irgsp1_rep	CDS	35656456	35656563	.	+	0	Parent=Os01t0832900-01
Chr01	irgsp1_rep	CDS	35656829	35657107	.	+	0	Parent=Os01t0832900-01
Chr01	irgsp1_rep	CDS	35657546	35657689	.	+	0	Parent=Os01t0832900-01
Chr01	irgsp1_rep	CDS	35657832	35658005	.	+	0	Parent=Os01t0832900-01
Chr01	irgsp1_rep	three_prime_UTR	35658006	35658307	.	+	.	Parent=Os01t0832900-01
Chr01	irgsp1_rep	mRNA	35658744	35660945	.	+	.	ID=Os01t0833000-01;Name=Os01t0833000-01;Locus_id=Os01g0833000;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK067226 (DDBJ%2C Best hit);ORF_evidence=A2ZZ98 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013098M23;Expression=AK067226;TENOR=Os01t0833000-01;KEGG=Os01t0833000-01
Chr01	irgsp1_rep	five_prime_UTR	35658744	35658793	.	+	.	Parent=Os01t0833000-01
Chr01	irgsp1_rep	CDS	35658794	35660791	.	+	0	Parent=Os01t0833000-01
Chr01	irgsp1_rep	three_prime_UTR	35660792	35660945	.	+	.	Parent=Os01t0833000-01
Chr01	irgsp1_rep	mRNA	35661145	35663837	.	-	.	ID=Os01t0833100-01;Name=Os01t0833100-01;Locus_id=Os01g0833100;Note=NLI interacting factor domain containing protein.;Transcript_evidence=AK068946 (DDBJ%2C Best hit);ORF_evidence=B6T776 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: phosphatase activity (GO:0016791);InterPro=NLI interacting factor (IPR004274),Dullard phosphatase domain%2C eukaryotic (IPR011948),HAD-like domain (IPR023214);NIAS_FLcDNA=J023001J01;Expression=AK068946;TENOR=Os01t0833100-01;KEGG=Os01t0833100-01
Chr01	irgsp1_rep	five_prime_UTR	35663714	35663837	.	-	.	Parent=Os01t0833100-01
Chr01	irgsp1_rep	CDS	35663396	35663713	.	-	0	Parent=Os01t0833100-01
Chr01	irgsp1_rep	CDS	35662363	35662491	.	-	0	Parent=Os01t0833100-01
Chr01	irgsp1_rep	CDS	35662154	35662274	.	-	0	Parent=Os01t0833100-01
Chr01	irgsp1_rep	CDS	35661995	35662076	.	-	2	Parent=Os01t0833100-01
Chr01	irgsp1_rep	CDS	35661628	35661781	.	-	1	Parent=Os01t0833100-01
Chr01	irgsp1_rep	CDS	35661412	35661546	.	-	0	Parent=Os01t0833100-01
Chr01	irgsp1_rep	three_prime_UTR	35661145	35661411	.	-	.	Parent=Os01t0833100-01
Chr01	irgsp1_rep	mRNA	35682337	35682777	.	+	.	ID=Os01t0833150-00;Name=Os01t0833150-00;Locus_id=Os01g0833150;Note=Similar to predicted protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5QLC3 (UniProt);GO=Molecular Function: ureidoglycolate hydrolase activity (GO:0004848);InterPro=Cupin%2C RmlC-type (IPR011051),Ureidoglycolate hydrolase domain (IPR024060);TENOR=Os01t0833150-00;KEGG=Os01t0833150-00
Chr01	irgsp1_rep	CDS	35682337	35682777	.	+	0	Parent=Os01t0833150-00
Chr01	irgsp1_rep	mRNA	35682818	35685747	.	+	.	ID=Os01t0833200-01;Name=Os01t0833200-01;Locus_id=Os01g0833200;Note=Similar to expressed protein.;Transcript_evidence=AK121629 (DDBJ%2C Best hit);ORF_evidence=XP_002879578.1 (RefSeq);GO=Molecular Function: ureidoglycolate hydrolase activity (GO:0004848);InterPro=Cupin%2C RmlC-type (IPR011051),Ureidoglycolate hydrolase domain (IPR024060);NIAS_FLcDNA=J033050C20;Expression=AK121629;TENOR=Os01t0833200-01;KEGG=Os01t0833200-01
Chr01	irgsp1_rep	five_prime_UTR	35682818	35682915	.	+	.	Parent=Os01t0833200-01
Chr01	irgsp1_rep	CDS	35682916	35683067	.	+	0	Parent=Os01t0833200-01
Chr01	irgsp1_rep	CDS	35683200	35683545	.	+	1	Parent=Os01t0833200-01
Chr01	irgsp1_rep	CDS	35685365	35685430	.	+	0	Parent=Os01t0833200-01
Chr01	irgsp1_rep	three_prime_UTR	35685431	35685747	.	+	.	Parent=Os01t0833200-01
Chr01	irgsp1_rep	mRNA	35686409	35687607	.	+	.	ID=Os01t0833400-01;Name=Os01t0833400-01;Locus_id=Os01g0833400;Note=Conserved hypothetical protein.;Transcript_evidence=AK106052 (DDBJ%2C Best hit);ORF_evidence=A2WWP1 (UniProt);NIAS_FLcDNA=001-206-F04;Expression=AK106052;TENOR=Os01t0833400-01;KEGG=Os01t0833400-01
Chr01	irgsp1_rep	five_prime_UTR	35686409	35686601	.	+	.	Parent=Os01t0833400-01
Chr01	irgsp1_rep	CDS	35686602	35686651	.	+	0	Parent=Os01t0833400-01
Chr01	irgsp1_rep	CDS	35686839	35687262	.	+	1	Parent=Os01t0833400-01
Chr01	irgsp1_rep	three_prime_UTR	35687263	35687607	.	+	.	Parent=Os01t0833400-01
Chr01	irgsp1_rep	mRNA	35686540	35687796	.	+	.	ID=Os01t0833400-02;Name=Os01t0833400-02;Locus_id=Os01g0833400;Note=Conserved hypothetical protein.;Transcript_evidence=AK072813 (DDBJ%2C Best hit);ORF_evidence=A2WWP1 (UniProt);NIAS_FLcDNA=J023141C24;Expression=AK072813;TENOR=Os01t0833400-02;KEGG=Os01t0833400-02
Chr01	irgsp1_rep	five_prime_UTR	35686540	35686601	.	+	.	Parent=Os01t0833400-02
Chr01	irgsp1_rep	CDS	35686602	35686651	.	+	0	Parent=Os01t0833400-02
Chr01	irgsp1_rep	CDS	35686839	35687262	.	+	1	Parent=Os01t0833400-02
Chr01	irgsp1_rep	three_prime_UTR	35687263	35687796	.	+	.	Parent=Os01t0833400-02
Chr01	irgsp1_rep	mRNA	35688062	35691424	.	-	.	ID=Os01t0833500-01;Name=Os01t0833500-01;Locus_id=Os01g0833500;CGSNL Gene Symbol=SCP5;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 5;Oryzabase Gene Symbol Synonym(s)=OsSCP5;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 5;Note=Similar to Serine carboxypeptidase II-1 precursor (EC 3.4.16.6) (CP-MII.1) (Fragment).;Transcript_evidence=AK073320 (DDBJ%2C Best hit);ORF_evidence=B6U5U4 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=J033029C16;Oryzabase=19190;Expression=AK073320;TENOR=Os01t0833500-01;KEGG=Os01t0833500-01 (EC:3.4.16.6%2C EC:4.1.2.11)
Chr01	irgsp1_rep	five_prime_UTR	35691042	35691424	.	-	.	Parent=Os01t0833500-01
Chr01	irgsp1_rep	CDS	35690687	35691041	.	-	0	Parent=Os01t0833500-01
Chr01	irgsp1_rep	CDS	35690461	35690556	.	-	2	Parent=Os01t0833500-01
Chr01	irgsp1_rep	CDS	35690265	35690357	.	-	2	Parent=Os01t0833500-01
Chr01	irgsp1_rep	CDS	35690084	35690169	.	-	2	Parent=Os01t0833500-01
Chr01	irgsp1_rep	CDS	35689741	35690001	.	-	0	Parent=Os01t0833500-01
Chr01	irgsp1_rep	CDS	35688975	35689102	.	-	0	Parent=Os01t0833500-01
Chr01	irgsp1_rep	CDS	35688795	35688890	.	-	1	Parent=Os01t0833500-01
Chr01	irgsp1_rep	CDS	35688540	35688645	.	-	1	Parent=Os01t0833500-01
Chr01	irgsp1_rep	CDS	35688310	35688453	.	-	0	Parent=Os01t0833500-01
Chr01	irgsp1_rep	three_prime_UTR	35688062	35688309	.	-	.	Parent=Os01t0833500-01
Chr01	irgsp1_rep	mRNA	35692800	35693807	.	-	.	ID=Os01t0833600-00;Name=Os01t0833600-00;Locus_id=Os01g0833600;Note=Conserved hypothetical protein.;Transcript_evidence=AK330700 (DDBJ);ORF_evidence=NP_001044714.1 (RefSeq);TENOR=Os01t0833600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	35693505	35693807	.	-	0	Parent=Os01t0833600-00
Chr01	irgsp1_rep	three_prime_UTR	35693223	35693504	.	-	.	Parent=Os01t0833600-00
Chr01	irgsp1_rep	three_prime_UTR	35693055	35693164	.	-	.	Parent=Os01t0833600-00
Chr01	irgsp1_rep	three_prime_UTR	35692800	35692883	.	-	.	Parent=Os01t0833600-00
Chr01	irgsp1_rep	mRNA	35700437	35707701	.	-	.	ID=Os01t0833700-01;Name=Os01t0833700-01;Locus_id=Os01g0833700;Note=Clathrin adaptor%2C mu subunit%2C C-terminal domain containing protein.;Transcript_evidence=AK069745 (DDBJ%2C Best hit);ORF_evidence=NP_001149384.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: clathrin adaptor complex (GO:0030131),Molecular Function: protein binding (GO:0005515);InterPro=Clathrin adaptor%2C mu subunit%2C C-terminal (IPR008968),Longin-like (IPR011012);NIAS_FLcDNA=J023027K10;Expression=AK069745;TENOR=Os01t0833700-01;KEGG=Os01t0833700-01
Chr01	irgsp1_rep	five_prime_UTR	35707528	35707701	.	-	.	Parent=Os01t0833700-01
Chr01	irgsp1_rep	five_prime_UTR	35706553	35706609	.	-	.	Parent=Os01t0833700-01
Chr01	irgsp1_rep	CDS	35706550	35706552	.	-	0	Parent=Os01t0833700-01
Chr01	irgsp1_rep	CDS	35706330	35706369	.	-	0	Parent=Os01t0833700-01
Chr01	irgsp1_rep	CDS	35705762	35705985	.	-	2	Parent=Os01t0833700-01
Chr01	irgsp1_rep	CDS	35705186	35705428	.	-	0	Parent=Os01t0833700-01
Chr01	irgsp1_rep	CDS	35704820	35704961	.	-	0	Parent=Os01t0833700-01
Chr01	irgsp1_rep	CDS	35703742	35704055	.	-	2	Parent=Os01t0833700-01
Chr01	irgsp1_rep	CDS	35703044	35703230	.	-	0	Parent=Os01t0833700-01
Chr01	irgsp1_rep	CDS	35702820	35702973	.	-	2	Parent=Os01t0833700-01
Chr01	irgsp1_rep	CDS	35701911	35701973	.	-	1	Parent=Os01t0833700-01
Chr01	irgsp1_rep	CDS	35701715	35701811	.	-	1	Parent=Os01t0833700-01
Chr01	irgsp1_rep	CDS	35700690	35700779	.	-	0	Parent=Os01t0833700-01
Chr01	irgsp1_rep	three_prime_UTR	35700437	35700689	.	-	.	Parent=Os01t0833700-01
Chr01	irgsp1_rep	mRNA	35700670	35705987	.	+	.	ID=Os01t0833750-00;Name=Os01t0833750-00;Locus_id=Os01g0833750;Note=Hypothetical protein.;Transcript_evidence=tplb0060a06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0833750-00
Chr01	irgsp1_rep	five_prime_UTR	35700670	35700742	.	+	.	Parent=Os01t0833750-00
Chr01	irgsp1_rep	five_prime_UTR	35701679	35701793	.	+	.	Parent=Os01t0833750-00
Chr01	irgsp1_rep	five_prime_UTR	35701891	35701966	.	+	.	Parent=Os01t0833750-00
Chr01	irgsp1_rep	five_prime_UTR	35702811	35702968	.	+	.	Parent=Os01t0833750-00
Chr01	irgsp1_rep	five_prime_UTR	35703034	35703221	.	+	.	Parent=Os01t0833750-00
Chr01	irgsp1_rep	five_prime_UTR	35703734	35704057	.	+	.	Parent=Os01t0833750-00
Chr01	irgsp1_rep	five_prime_UTR	35705020	35705219	.	+	.	Parent=Os01t0833750-00
Chr01	irgsp1_rep	CDS	35705220	35705424	.	+	0	Parent=Os01t0833750-00
Chr01	irgsp1_rep	CDS	35705757	35705776	.	+	2	Parent=Os01t0833750-00
Chr01	irgsp1_rep	three_prime_UTR	35705777	35705987	.	+	.	Parent=Os01t0833750-00
Chr01	irgsp1_rep	mRNA	35709694	35713436	.	-	.	ID=Os01t0833800-01;Name=Os01t0833800-01;Locus_id=Os01g0833800;Note=IQ calmodulin-binding region domain containing protein.;Transcript_evidence=AK072219 (DDBJ%2C Best hit);ORF_evidence=B8ABP2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);NIAS_FLcDNA=J013168C19;Expression=AK072219;TENOR=Os01t0833800-01;KEGG=Os01t0833800-01
Chr01	irgsp1_rep	five_prime_UTR	35713365	35713436	.	-	.	Parent=Os01t0833800-01
Chr01	irgsp1_rep	five_prime_UTR	35713154	35713284	.	-	.	Parent=Os01t0833800-01
Chr01	irgsp1_rep	five_prime_UTR	35712379	35712415	.	-	.	Parent=Os01t0833800-01
Chr01	irgsp1_rep	CDS	35712301	35712378	.	-	0	Parent=Os01t0833800-01
Chr01	irgsp1_rep	CDS	35711818	35712207	.	-	0	Parent=Os01t0833800-01
Chr01	irgsp1_rep	CDS	35711096	35711317	.	-	0	Parent=Os01t0833800-01
Chr01	irgsp1_rep	CDS	35710696	35710815	.	-	0	Parent=Os01t0833800-01
Chr01	irgsp1_rep	CDS	35709860	35710552	.	-	0	Parent=Os01t0833800-01
Chr01	irgsp1_rep	three_prime_UTR	35709694	35709859	.	-	.	Parent=Os01t0833800-01
Chr01	irgsp1_rep	mRNA	35709533	35713312	.	-	.	ID=Os01t0833800-02;Name=Os01t0833800-02;Locus_id=Os01g0833800;Note=Similar to cDNA clone:J013168C19%2C full insert sequence.;Transcript_evidence=AK103458 (DDBJ%2C Best hit);ORF_evidence=B7EKI0 (UniProt);NIAS_FLcDNA=J033129L04;Expression=AK103458;TENOR=Os01t0833800-02;KEGG=Os01t0833800-02
Chr01	irgsp1_rep	five_prime_UTR	35713154	35713312	.	-	.	Parent=Os01t0833800-02
Chr01	irgsp1_rep	five_prime_UTR	35712301	35712415	.	-	.	Parent=Os01t0833800-02
Chr01	irgsp1_rep	five_prime_UTR	35711210	35712207	.	-	.	Parent=Os01t0833800-02
Chr01	irgsp1_rep	CDS	35711096	35711209	.	-	0	Parent=Os01t0833800-02
Chr01	irgsp1_rep	CDS	35710696	35710815	.	-	0	Parent=Os01t0833800-02
Chr01	irgsp1_rep	CDS	35709860	35710552	.	-	0	Parent=Os01t0833800-02
Chr01	irgsp1_rep	three_prime_UTR	35709533	35709859	.	-	.	Parent=Os01t0833800-02
Chr01	irgsp1_rep	mRNA	35721021	35722721	.	-	.	ID=Os01t0834100-01;Name=Os01t0834100-01;Locus_id=Os01g0834100;Oryzabase Gene Symbol Synonym(s)=SIP1%2C EIP5;Oryzabase Gene Name Synonym(s)=SKIP interacting protein 1%2C SKIPa-interacting protein 1%2C SKIPa-interacting protein 1%2C EBR1-interacting protein 5;Note=Aldehyde dehydrogenase%2C conserved site domain containing protein.;Transcript_evidence=AK071045 (DDBJ%2C Best hit);ORF_evidence=B8Q887 (UniProt);NIAS_FLcDNA=J023080N07;Oryzabase=9933;Expression=AK071045;TENOR=Os01t0834100-01;KEGG=Os01t0834100-01
Chr01	irgsp1_rep	five_prime_UTR	35722460	35722721	.	-	.	Parent=Os01t0834100-01
Chr01	irgsp1_rep	CDS	35721386	35722459	.	-	0	Parent=Os01t0834100-01
Chr01	irgsp1_rep	three_prime_UTR	35721021	35721385	.	-	.	Parent=Os01t0834100-01
Chr01	irgsp1_rep	mRNA	35721437	35722747	.	+	.	ID=Os01t0834125-00;Name=Os01t0834125-00;Locus_id=Os01g0834125;Note=Hypothetical protein.;Transcript_evidence=EU968530 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0834125-00
Chr01	irgsp1_rep	five_prime_UTR	35721437	35721989	.	+	.	Parent=Os01t0834125-00
Chr01	irgsp1_rep	CDS	35721990	35722747	.	+	0	Parent=Os01t0834125-00
Chr01	irgsp1_rep	mRNA	35730583	35733021	.	-	.	ID=Os01t0834150-00;Name=Os01t0834150-00;Locus_id=Os01g0834150;Note=Hypothetical gene.;Transcript_evidence=AK330289 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0834150-00
Chr01	irgsp1_rep	five_prime_UTR	35732930	35733021	.	-	.	Parent=Os01t0834150-00
Chr01	irgsp1_rep	CDS	35732871	35732929	.	-	0	Parent=Os01t0834150-00
Chr01	irgsp1_rep	CDS	35730583	35730819	.	-	1	Parent=Os01t0834150-00
Chr01	irgsp1_rep	mRNA	35732665	35743682	.	+	.	ID=Os01t0834200-01;Name=Os01t0834200-01;Locus_id=Os01g0834200;Note=Similar to T-cell immune regulator 1 transcript variant 3 (Fragment).;Transcript_evidence=AK100543 (DDBJ%2C Best hit);ORF_evidence=XP_002879161.1 (RefSeq);GO=Biological Process: ATP hydrolysis coupled proton transport (GO:0015991),Cellular Component: proton-transporting two-sector ATPase complex%2C proton-transporting domain (GO:0033177),Molecular Function: hydrogen ion transmembrane transporter activity (GO:0015078);InterPro=ATPase%2C V0/A0 complex%2C 116kDa subunit (IPR002490);NIAS_FLcDNA=J023102L09;Expression=AK100543;TENOR=Os01t0834200-01;KEGG=Os01t0834200-01 (EC:3.6.3.14)
Chr01	irgsp1_rep	five_prime_UTR	35732665	35732855	.	+	.	Parent=Os01t0834200-01
Chr01	irgsp1_rep	CDS	35732856	35732996	.	+	0	Parent=Os01t0834200-01
Chr01	irgsp1_rep	CDS	35734176	35734220	.	+	0	Parent=Os01t0834200-01
Chr01	irgsp1_rep	CDS	35735311	35735433	.	+	0	Parent=Os01t0834200-01
Chr01	irgsp1_rep	CDS	35735545	35735652	.	+	0	Parent=Os01t0834200-01
Chr01	irgsp1_rep	CDS	35735988	35736101	.	+	0	Parent=Os01t0834200-01
Chr01	irgsp1_rep	CDS	35736181	35736354	.	+	0	Parent=Os01t0834200-01
Chr01	irgsp1_rep	CDS	35736580	35736717	.	+	0	Parent=Os01t0834200-01
Chr01	irgsp1_rep	CDS	35736906	35737013	.	+	0	Parent=Os01t0834200-01
Chr01	irgsp1_rep	CDS	35737130	35737237	.	+	0	Parent=Os01t0834200-01
Chr01	irgsp1_rep	CDS	35737336	35737484	.	+	0	Parent=Os01t0834200-01
Chr01	irgsp1_rep	CDS	35737996	35738149	.	+	1	Parent=Os01t0834200-01
Chr01	irgsp1_rep	CDS	35739228	35739388	.	+	0	Parent=Os01t0834200-01
Chr01	irgsp1_rep	CDS	35740480	35740686	.	+	1	Parent=Os01t0834200-01
Chr01	irgsp1_rep	CDS	35740780	35740963	.	+	1	Parent=Os01t0834200-01
Chr01	irgsp1_rep	CDS	35741046	35741129	.	+	0	Parent=Os01t0834200-01
Chr01	irgsp1_rep	CDS	35742411	35742604	.	+	0	Parent=Os01t0834200-01
Chr01	irgsp1_rep	CDS	35742693	35742752	.	+	1	Parent=Os01t0834200-01
Chr01	irgsp1_rep	CDS	35742944	35743148	.	+	1	Parent=Os01t0834200-01
Chr01	irgsp1_rep	three_prime_UTR	35743149	35743682	.	+	.	Parent=Os01t0834200-01
Chr01	irgsp1_rep	mRNA	35732727	35743623	.	+	.	ID=Os01t0834200-02;Name=Os01t0834200-02;Locus_id=Os01g0834200;Note=Similar to VHA-A1 (VACUOLAR PROTON ATPASE A 1)%3B ATPase.;Transcript_evidence=AK099857 (DDBJ%2C Best hit);ORF_evidence=XP_002879161.1 (RefSeq);GO=Biological Process: ATP hydrolysis coupled proton transport (GO:0015991),Cellular Component: proton-transporting two-sector ATPase complex%2C proton-transporting domain (GO:0033177),Molecular Function: hydrogen ion transmembrane transporter activity (GO:0015078);InterPro=ATPase%2C V0/A0 complex%2C 116kDa subunit (IPR002490);NIAS_FLcDNA=J013110K23;Expression=AK099857;TENOR=Os01t0834200-02;KEGG=Os01t0834200-02 (EC:3.6.3.14)
Chr01	irgsp1_rep	five_prime_UTR	35732727	35732855	.	+	.	Parent=Os01t0834200-02
Chr01	irgsp1_rep	CDS	35732856	35732996	.	+	0	Parent=Os01t0834200-02
Chr01	irgsp1_rep	CDS	35734176	35734220	.	+	0	Parent=Os01t0834200-02
Chr01	irgsp1_rep	CDS	35735311	35735433	.	+	0	Parent=Os01t0834200-02
Chr01	irgsp1_rep	CDS	35735545	35735652	.	+	0	Parent=Os01t0834200-02
Chr01	irgsp1_rep	CDS	35735988	35736101	.	+	0	Parent=Os01t0834200-02
Chr01	irgsp1_rep	CDS	35736181	35736360	.	+	0	Parent=Os01t0834200-02
Chr01	irgsp1_rep	three_prime_UTR	35736361	35736368	.	+	.	Parent=Os01t0834200-02
Chr01	irgsp1_rep	three_prime_UTR	35736580	35736717	.	+	.	Parent=Os01t0834200-02
Chr01	irgsp1_rep	three_prime_UTR	35736906	35737013	.	+	.	Parent=Os01t0834200-02
Chr01	irgsp1_rep	three_prime_UTR	35737130	35737237	.	+	.	Parent=Os01t0834200-02
Chr01	irgsp1_rep	three_prime_UTR	35737336	35737484	.	+	.	Parent=Os01t0834200-02
Chr01	irgsp1_rep	three_prime_UTR	35737996	35738149	.	+	.	Parent=Os01t0834200-02
Chr01	irgsp1_rep	three_prime_UTR	35739228	35739388	.	+	.	Parent=Os01t0834200-02
Chr01	irgsp1_rep	three_prime_UTR	35740480	35740686	.	+	.	Parent=Os01t0834200-02
Chr01	irgsp1_rep	three_prime_UTR	35740780	35740963	.	+	.	Parent=Os01t0834200-02
Chr01	irgsp1_rep	three_prime_UTR	35741046	35741129	.	+	.	Parent=Os01t0834200-02
Chr01	irgsp1_rep	three_prime_UTR	35742411	35742604	.	+	.	Parent=Os01t0834200-02
Chr01	irgsp1_rep	three_prime_UTR	35742693	35742752	.	+	.	Parent=Os01t0834200-02
Chr01	irgsp1_rep	three_prime_UTR	35742944	35743623	.	+	.	Parent=Os01t0834200-02
Chr01	irgsp1_rep	mRNA	35732750	35743623	.	+	.	ID=Os01t0834200-03;Name=Os01t0834200-03;Locus_id=Os01g0834200;Note=Similar to T-cell immune regulator 1 transcript variant 3 (Fragment).;Transcript_evidence=AK069188 (DDBJ%2C Best hit);ORF_evidence=XP_002879161.1 (RefSeq);GO=Biological Process: ATP hydrolysis coupled proton transport (GO:0015991),Cellular Component: proton-transporting two-sector ATPase complex%2C proton-transporting domain (GO:0033177),Molecular Function: hydrogen ion transmembrane transporter activity (GO:0015078);InterPro=ATPase%2C V0/A0 complex%2C 116kDa subunit (IPR002490);NIAS_FLcDNA=J023006E13;Expression=AK069188;TENOR=Os01t0834200-03;KEGG=Os01t0834200-03 (EC:3.6.3.14)
Chr01	irgsp1_rep	five_prime_UTR	35732750	35732855	.	+	.	Parent=Os01t0834200-03
Chr01	irgsp1_rep	CDS	35732856	35732996	.	+	0	Parent=Os01t0834200-03
Chr01	irgsp1_rep	CDS	35734176	35734220	.	+	0	Parent=Os01t0834200-03
Chr01	irgsp1_rep	CDS	35735311	35735433	.	+	0	Parent=Os01t0834200-03
Chr01	irgsp1_rep	CDS	35735545	35735652	.	+	0	Parent=Os01t0834200-03
Chr01	irgsp1_rep	CDS	35735988	35736101	.	+	0	Parent=Os01t0834200-03
Chr01	irgsp1_rep	CDS	35736181	35736354	.	+	0	Parent=Os01t0834200-03
Chr01	irgsp1_rep	CDS	35736580	35736717	.	+	0	Parent=Os01t0834200-03
Chr01	irgsp1_rep	CDS	35736906	35737013	.	+	0	Parent=Os01t0834200-03
Chr01	irgsp1_rep	CDS	35737130	35737237	.	+	0	Parent=Os01t0834200-03
Chr01	irgsp1_rep	CDS	35737336	35737484	.	+	0	Parent=Os01t0834200-03
Chr01	irgsp1_rep	CDS	35737996	35738149	.	+	1	Parent=Os01t0834200-03
Chr01	irgsp1_rep	CDS	35739228	35739388	.	+	0	Parent=Os01t0834200-03
Chr01	irgsp1_rep	CDS	35740480	35740686	.	+	1	Parent=Os01t0834200-03
Chr01	irgsp1_rep	CDS	35740780	35740963	.	+	1	Parent=Os01t0834200-03
Chr01	irgsp1_rep	CDS	35741046	35741129	.	+	0	Parent=Os01t0834200-03
Chr01	irgsp1_rep	CDS	35742411	35742604	.	+	0	Parent=Os01t0834200-03
Chr01	irgsp1_rep	CDS	35742693	35742752	.	+	1	Parent=Os01t0834200-03
Chr01	irgsp1_rep	CDS	35742944	35743148	.	+	1	Parent=Os01t0834200-03
Chr01	irgsp1_rep	three_prime_UTR	35743149	35743623	.	+	.	Parent=Os01t0834200-03
Chr01	irgsp1_rep	mRNA	35739247	35743623	.	+	.	ID=Os01t0834200-04;Name=Os01t0834200-04;Locus_id=Os01g0834200;Note=Similar to VHA-A1 (VACUOLAR PROTON ATPASE A 1)%3B ATPase.;Transcript_evidence=AK059495 (DDBJ%2C Best hit);ORF_evidence=XP_002879161.1 (RefSeq);GO=Biological Process: ATP hydrolysis coupled proton transport (GO:0015991),Cellular Component: proton-transporting two-sector ATPase complex%2C proton-transporting domain (GO:0033177),Molecular Function: hydrogen ion transmembrane transporter activity (GO:0015078);InterPro=ATPase%2C V0/A0 complex%2C 116kDa subunit (IPR002490);NIAS_FLcDNA=001-028-H08;Expression=AK059495;TENOR=Os01t0834200-04;KEGG=Os01t0834200-04 (EC:3.6.3.14)
Chr01	irgsp1_rep	five_prime_UTR	35739247	35739248	.	+	.	Parent=Os01t0834200-04
Chr01	irgsp1_rep	CDS	35739249	35739388	.	+	0	Parent=Os01t0834200-04
Chr01	irgsp1_rep	CDS	35740480	35740686	.	+	1	Parent=Os01t0834200-04
Chr01	irgsp1_rep	CDS	35740780	35740963	.	+	1	Parent=Os01t0834200-04
Chr01	irgsp1_rep	CDS	35741046	35741129	.	+	0	Parent=Os01t0834200-04
Chr01	irgsp1_rep	CDS	35742411	35742604	.	+	0	Parent=Os01t0834200-04
Chr01	irgsp1_rep	CDS	35742693	35742752	.	+	1	Parent=Os01t0834200-04
Chr01	irgsp1_rep	CDS	35742944	35743148	.	+	1	Parent=Os01t0834200-04
Chr01	irgsp1_rep	three_prime_UTR	35743149	35743623	.	+	.	Parent=Os01t0834200-04
Chr01	irgsp1_rep	mRNA	35745526	35749594	.	-	.	ID=Os01t0834250-01;Name=Os01t0834250-01;Locus_id=Os01g0834250;Note=Hypothetical gene.;Transcript_evidence=AK243346 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100060A11;TENOR=Os01t0834250-01;KEGG=Os01t0834250-01
Chr01	irgsp1_rep	CDS	35749322	35749594	.	-	0	Parent=Os01t0834250-01
Chr01	irgsp1_rep	three_prime_UTR	35749209	35749321	.	-	.	Parent=Os01t0834250-01
Chr01	irgsp1_rep	three_prime_UTR	35749029	35749096	.	-	.	Parent=Os01t0834250-01
Chr01	irgsp1_rep	three_prime_UTR	35748866	35748924	.	-	.	Parent=Os01t0834250-01
Chr01	irgsp1_rep	three_prime_UTR	35747676	35747740	.	-	.	Parent=Os01t0834250-01
Chr01	irgsp1_rep	three_prime_UTR	35745526	35746321	.	-	.	Parent=Os01t0834250-01
Chr01	irgsp1_rep	mRNA	35756352	35758663	.	-	.	ID=Os01t0834400-01;Name=Os01t0834400-01;Locus_id=Os01g0834400;CGSNL Gene Symbol=HAP3A;CGSNL Gene Name=HAP3A SUBUNIT OF CCAAT-BOX BINDING COMPLEX;Oryzabase Gene Symbol Synonym(s)=OsHAP3A%2C OsNF-YB-2%2C NFYB2%2C NF-YB2;Oryzabase Gene Name Synonym(s)=rice HAP3A%2C Nuclear transcription factor Y subunit B-2%2C NUCLEAR FACTOR-Y subunit B2%2C NUCLEAR FACTOR-Y subunit NF-YB2%2C Transcriptional activator HAP3A%2C NF-YB subunit 2%2C NF-YB family 2;Note=Similar to HAP3.;Transcript_evidence=AK108142 (DDBJ%2C Best hit);ORF_evidence=Q5QMG3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: intracellular (GO:0005622),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Transcription factor%2C NFYB/HAP3%2C conserved site (IPR003956),Transcription factor%2C CBFA/NFYB%2C DNA topoisomerase (IPR003957),Transcription factor CBF/NF-Y/archaeal histone (IPR003958),Histone-fold (IPR009072);NIAS_FLcDNA=002-139-E10;Oryzabase=3123;Expression=AK108142;TENOR=Os01t0834400-01;KEGG=Os01t0834400-01
Chr01	irgsp1_rep	five_prime_UTR	35758559	35758663	.	-	.	Parent=Os01t0834400-01
Chr01	irgsp1_rep	CDS	35758558	35758558	.	-	0	Parent=Os01t0834400-01
Chr01	irgsp1_rep	CDS	35758251	35758470	.	-	2	Parent=Os01t0834400-01
Chr01	irgsp1_rep	CDS	35757998	35758129	.	-	1	Parent=Os01t0834400-01
Chr01	irgsp1_rep	CDS	35757421	35757424	.	-	1	Parent=Os01t0834400-01
Chr01	irgsp1_rep	three_prime_UTR	35757325	35757420	.	-	.	Parent=Os01t0834400-01
Chr01	irgsp1_rep	three_prime_UTR	35757206	35757250	.	-	.	Parent=Os01t0834400-01
Chr01	irgsp1_rep	three_prime_UTR	35757003	35757068	.	-	.	Parent=Os01t0834400-01
Chr01	irgsp1_rep	three_prime_UTR	35756352	35756764	.	-	.	Parent=Os01t0834400-01
Chr01	irgsp1_rep	mRNA	35756464	35758551	.	-	.	ID=Os01t0834400-02;Name=Os01t0834400-02;Locus_id=Os01g0834400;RAP-DB Gene Symbol Synonym(s)=HAP3A%2C OsHAP3A%2COsNF-YB-2%2C NFYB2;RAP-DB Gene Name Synonym(s)=HAP3A SUBUNIT OF CCAAT-BOX BINDING COMPLEX%2C rice HAP3A%2C Nuclear transcription factor Y subunit B-2%2C Transcriptional activator HAP3A;CGSNL Gene Symbol=HAP3A;CGSNL Gene Name=HAP3A SUBUNIT OF CCAAT-BOX BINDING COMPLEX;Oryzabase Gene Symbol Synonym(s)=OsHAP3A%2C OsNF-YB-2%2C NFYB2%2C NF-YB2;Oryzabase Gene Name Synonym(s)=rice HAP3A%2C Nuclear transcription factor Y subunit B-2%2C NUCLEAR FACTOR-Y subunit B2%2C NUCLEAR FACTOR-Y subunit NF-YB2%2C Transcriptional activator HAP3A%2C NF-YB subunit 2%2C NF-YB family 2;Note=CCAAT-box binding transcription factor%2C Chloroplast biogenesis;Transcript_evidence=AB095438;ORF_evidence=Q5QMG3;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein heterodimerization activity (GO:0046982),Cellular Component: intracellular (GO:0005622),Cellular Component: nucleus (GO:0005634);InterPro=Histone-fold (IPR009072),Transcription factor CBF/NF-Y/archaeal histone (IPR003958),Transcription factor%2C NFYB/HAP3%2C conserved site (IPR003956);Manual Curation=December 24%2C 2009;Literature_PMID=14617083,18193457;Oryzabase=3123
Chr01	irgsp1_rep	five_prime_UTR	35758490	35758551	.	-	.	Parent=Os01t0834400-02
Chr01	irgsp1_rep	CDS	35758251	35758489	.	-	0	Parent=Os01t0834400-02
Chr01	irgsp1_rep	CDS	35758000	35758129	.	-	1	Parent=Os01t0834400-02
Chr01	irgsp1_rep	CDS	35757866	35757871	.	-	0	Parent=Os01t0834400-02
Chr01	irgsp1_rep	CDS	35757325	35757420	.	-	0	Parent=Os01t0834400-02
Chr01	irgsp1_rep	CDS	35757206	35757250	.	-	0	Parent=Os01t0834400-02
Chr01	irgsp1_rep	CDS	35757048	35757068	.	-	0	Parent=Os01t0834400-02
Chr01	irgsp1_rep	three_prime_UTR	35757003	35757047	.	-	.	Parent=Os01t0834400-02
Chr01	irgsp1_rep	three_prime_UTR	35756464	35756764	.	-	.	Parent=Os01t0834400-02
Chr01	irgsp1_rep	mRNA	35760071	35761608	.	-	.	ID=Os01t0834500-01;Name=Os01t0834500-01;Locus_id=Os01g0834500;Oryzabase Gene Name Synonym(s)=Ribosomal protein S12;Note=Similar to 40S ribosomal protein S23 (S12).;Transcript_evidence=AK058829 (DDBJ%2C Best hit),AK069399 (DDBJ%2C Best hit);ORF_evidence=B4FBY5 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: small ribosomal subunit (GO:0015935),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S23%2C eukaryotic/archaeal (IPR005680),Ribosomal protein S12/S23 (IPR006032),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=001-004-A03,J023014I18;Oryzabase=17754;Expression=AK058829;TENOR=Os01t0834500-01;KEGG=Os01t0834500-01
Chr01	irgsp1_rep	five_prime_UTR	35761507	35761608	.	-	.	Parent=Os01t0834500-01
Chr01	irgsp1_rep	CDS	35761502	35761506	.	-	0	Parent=Os01t0834500-01
Chr01	irgsp1_rep	CDS	35760711	35760866	.	-	1	Parent=Os01t0834500-01
Chr01	irgsp1_rep	CDS	35760500	35760626	.	-	1	Parent=Os01t0834500-01
Chr01	irgsp1_rep	CDS	35760287	35760427	.	-	0	Parent=Os01t0834500-01
Chr01	irgsp1_rep	three_prime_UTR	35760071	35760286	.	-	.	Parent=Os01t0834500-01
Chr01	irgsp1_rep	mRNA	35763733	35764006	.	-	.	ID=Os01t0834600-00;Name=Os01t0834600-00;Locus_id=Os01g0834600;Note=40S ribosomal protein S23.;Transcript_evidence=D21303 (DDBJ%2C Best hit);ORF_evidence=NP_566351.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S12/S23 (IPR006032),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);TENOR=Os01t0834600-00;KEGG=Os01t0834600-00
Chr01	irgsp1_rep	CDS	35763866	35764006	.	-	0	Parent=Os01t0834600-00
Chr01	irgsp1_rep	three_prime_UTR	35763733	35763865	.	-	.	Parent=Os01t0834600-00
Chr01	irgsp1_rep	mRNA	35767582	35772351	.	+	.	ID=Os01t0834700-01;Name=Os01t0834700-01;Locus_id=Os01g0834700;CGSNL Gene Symbol=C3H11;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 11;Oryzabase Gene Symbol Synonym(s)=OsC3H11%2C DLN25%2C OsDLN25;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 11%2C DLN repressor 25%2C DLN motif protein 25;Note=Zinc finger%2C CCCH-type domain containing protein.;Transcript_evidence=AK106074 (DDBJ%2C Best hit),AK101559 (DDBJ%2C Best hit);ORF_evidence=B6TD33 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=001-206-H10,J033050C24;Oryzabase=8574;Expression=AK106074;TENOR=Os01t0834700-01;KEGG=Os01t0834700-01
Chr01	irgsp1_rep	five_prime_UTR	35767582	35767786	.	+	.	Parent=Os01t0834700-01
Chr01	irgsp1_rep	CDS	35767787	35767961	.	+	0	Parent=Os01t0834700-01
Chr01	irgsp1_rep	CDS	35768071	35768157	.	+	2	Parent=Os01t0834700-01
Chr01	irgsp1_rep	CDS	35768618	35768758	.	+	2	Parent=Os01t0834700-01
Chr01	irgsp1_rep	CDS	35768859	35768947	.	+	2	Parent=Os01t0834700-01
Chr01	irgsp1_rep	CDS	35770250	35770438	.	+	0	Parent=Os01t0834700-01
Chr01	irgsp1_rep	CDS	35770549	35770679	.	+	0	Parent=Os01t0834700-01
Chr01	irgsp1_rep	CDS	35770764	35770866	.	+	1	Parent=Os01t0834700-01
Chr01	irgsp1_rep	CDS	35771864	35772049	.	+	0	Parent=Os01t0834700-01
Chr01	irgsp1_rep	three_prime_UTR	35772050	35772351	.	+	.	Parent=Os01t0834700-01
Chr01	irgsp1_rep	mRNA	35770822	35772130	.	+	.	ID=Os01t0834700-02;Name=Os01t0834700-02;Locus_id=Os01g0834700;CGSNL Gene Symbol=C3H11;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 11;Oryzabase Gene Symbol Synonym(s)=OsC3H11%2C DLN25%2C OsDLN25;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 11%2C DLN repressor 25%2C DLN motif protein 25;Note=Similar to nucleic acid binding protein.;Transcript_evidence=AK058413 (DDBJ%2C Best hit);ORF_evidence=B6TD33 (UniProt);NIAS_FLcDNA=001-015-C12;Oryzabase=8574;Expression=AK058413;TENOR=Os01t0834700-02;KEGG=Os01t0834700-02
Chr01	irgsp1_rep	CDS	35770822	35770866	.	+	0	Parent=Os01t0834700-02
Chr01	irgsp1_rep	CDS	35771864	35772049	.	+	0	Parent=Os01t0834700-02
Chr01	irgsp1_rep	three_prime_UTR	35772050	35772130	.	+	.	Parent=Os01t0834700-02
Chr01	irgsp1_rep	mRNA	35776008	35776507	.	-	.	ID=Os01t0834800-00;Name=Os01t0834800-00;Locus_id=Os01g0834800;Note=Conserved hypothetical protein.;Transcript_evidence=EU969310 (DDBJ);ORF_evidence=Q5QMG1 (UniProt);TENOR=Os01t0834800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	35776070	35776507	.	-	0	Parent=Os01t0834800-00
Chr01	irgsp1_rep	three_prime_UTR	35776008	35776069	.	-	.	Parent=Os01t0834800-00
Chr01	irgsp1_rep	mRNA	35781678	35782089	.	-	.	ID=Os01t0834900-01;Name=Os01t0834900-01;Locus_id=Os01g0834900;Note=Hypothetical conserved gene.;Transcript_evidence=AK063898 (DDBJ%2C Best hit);ORF_evidence=A2ZZB5 (UniProt);NIAS_FLcDNA=001-122-H02;Expression=AK063898;TENOR=Os01t0834900-01;KEGG=Os01t0834900-01
Chr01	irgsp1_rep	five_prime_UTR	35782088	35782089	.	-	.	Parent=Os01t0834900-01
Chr01	irgsp1_rep	CDS	35781890	35782087	.	-	0	Parent=Os01t0834900-01
Chr01	irgsp1_rep	three_prime_UTR	35781678	35781889	.	-	.	Parent=Os01t0834900-01
Chr01	irgsp1_rep	mRNA	35784466	35793928	.	-	.	ID=Os01t0835000-01;Name=Os01t0835000-01;Locus_id=Os01g0835000;Note=Similar to predicted protein.;Transcript_evidence=AK241440 (DDBJ%2C Best hit);ORF_evidence=NP_567014.2 (RefSeq);GO=Biological Process: regulation of Rab GTPase activity (GO:0032313),Cellular Component: intracellular (GO:0005622),Molecular Function: Rab GTPase activator activity (GO:0005097);InterPro=Rab-GAP/TBC domain (IPR000195);NIAS_FLcDNA=J065162K05;TENOR=Os01t0835000-01;KEGG=Os01t0835000-01
Chr01	irgsp1_rep	five_prime_UTR	35793453	35793928	.	-	.	Parent=Os01t0835000-01
Chr01	irgsp1_rep	CDS	35793409	35793452	.	-	0	Parent=Os01t0835000-01
Chr01	irgsp1_rep	CDS	35792766	35792835	.	-	1	Parent=Os01t0835000-01
Chr01	irgsp1_rep	CDS	35792158	35792685	.	-	0	Parent=Os01t0835000-01
Chr01	irgsp1_rep	CDS	35791903	35792076	.	-	0	Parent=Os01t0835000-01
Chr01	irgsp1_rep	CDS	35791668	35791781	.	-	0	Parent=Os01t0835000-01
Chr01	irgsp1_rep	CDS	35790233	35790291	.	-	0	Parent=Os01t0835000-01
Chr01	irgsp1_rep	CDS	35790051	35790117	.	-	1	Parent=Os01t0835000-01
Chr01	irgsp1_rep	CDS	35789885	35789936	.	-	0	Parent=Os01t0835000-01
Chr01	irgsp1_rep	CDS	35789690	35789782	.	-	2	Parent=Os01t0835000-01
Chr01	irgsp1_rep	CDS	35789044	35789127	.	-	2	Parent=Os01t0835000-01
Chr01	irgsp1_rep	CDS	35788530	35788924	.	-	2	Parent=Os01t0835000-01
Chr01	irgsp1_rep	CDS	35787794	35787855	.	-	0	Parent=Os01t0835000-01
Chr01	irgsp1_rep	CDS	35787074	35787143	.	-	1	Parent=Os01t0835000-01
Chr01	irgsp1_rep	CDS	35786712	35786792	.	-	0	Parent=Os01t0835000-01
Chr01	irgsp1_rep	CDS	35786504	35786605	.	-	0	Parent=Os01t0835000-01
Chr01	irgsp1_rep	CDS	35786035	35786174	.	-	0	Parent=Os01t0835000-01
Chr01	irgsp1_rep	CDS	35785693	35785810	.	-	1	Parent=Os01t0835000-01
Chr01	irgsp1_rep	CDS	35784819	35785040	.	-	0	Parent=Os01t0835000-01
Chr01	irgsp1_rep	three_prime_UTR	35784466	35784818	.	-	.	Parent=Os01t0835000-01
Chr01	irgsp1_rep	mRNA	35784866	35793475	.	+	.	ID=Os01t0835083-00;Name=Os01t0835083-00;Locus_id=Os01g0835083;Note=Hypothetical protein.;Transcript_evidence=tplb0061a18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0835083-00
Chr01	irgsp1_rep	five_prime_UTR	35784866	35784867	.	+	.	Parent=Os01t0835083-00
Chr01	irgsp1_rep	CDS	35784868	35785028	.	+	0	Parent=Os01t0835083-00
Chr01	irgsp1_rep	CDS	35785689	35785764	.	+	1	Parent=Os01t0835083-00
Chr01	irgsp1_rep	three_prime_UTR	35785765	35785824	.	+	.	Parent=Os01t0835083-00
Chr01	irgsp1_rep	three_prime_UTR	35786051	35786192	.	+	.	Parent=Os01t0835083-00
Chr01	irgsp1_rep	three_prime_UTR	35786521	35786603	.	+	.	Parent=Os01t0835083-00
Chr01	irgsp1_rep	three_prime_UTR	35786710	35786776	.	+	.	Parent=Os01t0835083-00
Chr01	irgsp1_rep	three_prime_UTR	35787062	35787142	.	+	.	Parent=Os01t0835083-00
Chr01	irgsp1_rep	three_prime_UTR	35787793	35787859	.	+	.	Parent=Os01t0835083-00
Chr01	irgsp1_rep	three_prime_UTR	35788534	35788942	.	+	.	Parent=Os01t0835083-00
Chr01	irgsp1_rep	three_prime_UTR	35789060	35789125	.	+	.	Parent=Os01t0835083-00
Chr01	irgsp1_rep	three_prime_UTR	35789688	35789820	.	+	.	Parent=Os01t0835083-00
Chr01	irgsp1_rep	three_prime_UTR	35790034	35790151	.	+	.	Parent=Os01t0835083-00
Chr01	irgsp1_rep	three_prime_UTR	35791645	35791780	.	+	.	Parent=Os01t0835083-00
Chr01	irgsp1_rep	three_prime_UTR	35791902	35792076	.	+	.	Parent=Os01t0835083-00
Chr01	irgsp1_rep	three_prime_UTR	35792158	35792688	.	+	.	Parent=Os01t0835083-00
Chr01	irgsp1_rep	three_prime_UTR	35792769	35792834	.	+	.	Parent=Os01t0835083-00
Chr01	irgsp1_rep	three_prime_UTR	35793408	35793475	.	+	.	Parent=Os01t0835083-00
Chr01	irgsp1_rep	mRNA	35798452	35798524	.	-	.	ID=Os01t0835166-00;Name=Os01t0835166-00;Locus_id=Os01g0835166;Note=Non-protein coding transcript.;Transcript_evidence=X06283 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0835166-00
Chr01	irgsp1_rep	exon	35798452	35798524	.	-	.	Parent=Os01t0835166-00
Chr01	irgsp1_rep	mRNA	35801512	35801584	.	-	.	ID=Os01t0835332-00;Name=Os01t0835332-00;Locus_id=Os01g0835332;Note=Non-protein coding transcript.;Transcript_evidence=X06283 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0835332-00
Chr01	irgsp1_rep	exon	35801512	35801584	.	-	.	Parent=Os01t0835332-00
Chr01	irgsp1_rep	mRNA	35813149	35817684	.	+	.	ID=Os01t0835500-01;Name=Os01t0835500-01;Locus_id=Os01g0835500;CGSNL Gene Symbol=RBOHE;CGSNL Gene Name=RESPIRATORY BURST OXIDASE HOMOLOG E;Oryzabase Gene Symbol Synonym(s)=rbohE%2C OsrbohE%2C Os rbohE%2C OsRbohE%2C OsNox3%2C Nox3%2C OsRboh3%2C Rboh3;Oryzabase Gene Name Synonym(s)=Respiratory Burst Oxidase Homolog E%2C NADPH oxidase 3;Note=Similar to Respiratory burst oxidase protein.;Transcript_evidence=AK100241 (DDBJ%2C Best hit);ORF_evidence=B2D0P0 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: iron ion binding (GO:0005506),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: oxidoreductase activity%2C acting on NADH or NADPH%2C oxygen as acceptor (GO:0050664);InterPro=CytoChrome b245%2C heavy chain (IPR000778),EF-hand-like domain (IPR011992),FAD-binding 8 (IPR013112),Ferric reductase%2C NAD binding (IPR013121),Flavoprotein transmembrane component (IPR013130),NADPH oxidase Respiratory burst (IPR013623),Ferredoxin reductase-type FAD-binding domain (IPR017927),Riboflavin synthase-like beta-barrel (IPR017938),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J023054P13;Oryzabase=10486;Expression=AK100241;TENOR=Os01t0835500-01;KEGG=Os01t0835500-01
Chr01	irgsp1_rep	five_prime_UTR	35813149	35813297	.	+	.	Parent=Os01t0835500-01
Chr01	irgsp1_rep	CDS	35813298	35813673	.	+	0	Parent=Os01t0835500-01
Chr01	irgsp1_rep	CDS	35814258	35814420	.	+	2	Parent=Os01t0835500-01
Chr01	irgsp1_rep	CDS	35814530	35814578	.	+	1	Parent=Os01t0835500-01
Chr01	irgsp1_rep	CDS	35814684	35815607	.	+	0	Parent=Os01t0835500-01
Chr01	irgsp1_rep	CDS	35815695	35815790	.	+	0	Parent=Os01t0835500-01
Chr01	irgsp1_rep	CDS	35815883	35815998	.	+	0	Parent=Os01t0835500-01
Chr01	irgsp1_rep	CDS	35816086	35816188	.	+	1	Parent=Os01t0835500-01
Chr01	irgsp1_rep	CDS	35816311	35816399	.	+	0	Parent=Os01t0835500-01
Chr01	irgsp1_rep	CDS	35816491	35816641	.	+	1	Parent=Os01t0835500-01
Chr01	irgsp1_rep	CDS	35816736	35816882	.	+	0	Parent=Os01t0835500-01
Chr01	irgsp1_rep	CDS	35816979	35817107	.	+	0	Parent=Os01t0835500-01
Chr01	irgsp1_rep	CDS	35817192	35817270	.	+	0	Parent=Os01t0835500-01
Chr01	irgsp1_rep	CDS	35817357	35817466	.	+	2	Parent=Os01t0835500-01
Chr01	irgsp1_rep	three_prime_UTR	35817467	35817684	.	+	.	Parent=Os01t0835500-01
Chr01	irgsp1_rep	mRNA	35814110	35817684	.	+	.	ID=Os01t0835500-02;Name=Os01t0835500-02;Locus_id=Os01g0835500;CGSNL Gene Symbol=RBOHE;CGSNL Gene Name=RESPIRATORY BURST OXIDASE HOMOLOG E;Oryzabase Gene Symbol Synonym(s)=rbohE%2C OsrbohE%2C Os rbohE%2C OsRbohE%2C OsNox3%2C Nox3%2C OsRboh3%2C Rboh3;Oryzabase Gene Name Synonym(s)=Respiratory Burst Oxidase Homolog E%2C NADPH oxidase 3;Note=Similar to respiratory burst oxidase protein A.;Transcript_evidence=AK068400 (DDBJ%2C Best hit);ORF_evidence=B2D0P0 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: iron ion binding (GO:0005506),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: oxidoreductase activity%2C acting on NADH or NADPH%2C oxygen as acceptor (GO:0050664);InterPro=CytoChrome b245%2C heavy chain (IPR000778),EF-hand-like domain (IPR011992),FAD-binding 8 (IPR013112),Ferric reductase%2C NAD binding (IPR013121),Flavoprotein transmembrane component (IPR013130),NADPH oxidase Respiratory burst (IPR013623),Ferredoxin reductase-type FAD-binding domain (IPR017927),Riboflavin synthase-like beta-barrel (IPR017938),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J013151M04;Oryzabase=10486;Expression=AK068400;TENOR=Os01t0835500-02;KEGG=Os01t0835500-02
Chr01	irgsp1_rep	five_prime_UTR	35814110	35814184	.	+	.	Parent=Os01t0835500-02
Chr01	irgsp1_rep	CDS	35814185	35814420	.	+	0	Parent=Os01t0835500-02
Chr01	irgsp1_rep	CDS	35814530	35814578	.	+	1	Parent=Os01t0835500-02
Chr01	irgsp1_rep	CDS	35814684	35815607	.	+	0	Parent=Os01t0835500-02
Chr01	irgsp1_rep	CDS	35815695	35815790	.	+	0	Parent=Os01t0835500-02
Chr01	irgsp1_rep	CDS	35815883	35815998	.	+	0	Parent=Os01t0835500-02
Chr01	irgsp1_rep	CDS	35816086	35816188	.	+	1	Parent=Os01t0835500-02
Chr01	irgsp1_rep	CDS	35816311	35816399	.	+	0	Parent=Os01t0835500-02
Chr01	irgsp1_rep	CDS	35816491	35816641	.	+	1	Parent=Os01t0835500-02
Chr01	irgsp1_rep	CDS	35816736	35816882	.	+	0	Parent=Os01t0835500-02
Chr01	irgsp1_rep	CDS	35816979	35817107	.	+	0	Parent=Os01t0835500-02
Chr01	irgsp1_rep	CDS	35817192	35817270	.	+	0	Parent=Os01t0835500-02
Chr01	irgsp1_rep	CDS	35817357	35817466	.	+	2	Parent=Os01t0835500-02
Chr01	irgsp1_rep	three_prime_UTR	35817467	35817684	.	+	.	Parent=Os01t0835500-02
Chr01	irgsp1_rep	mRNA	35814674	35817706	.	+	.	ID=Os01t0835500-03;Name=Os01t0835500-03;Locus_id=Os01g0835500;CGSNL Gene Symbol=RBOHE;CGSNL Gene Name=RESPIRATORY BURST OXIDASE HOMOLOG E;Oryzabase Gene Symbol Synonym(s)=rbohE%2C OsrbohE%2C Os rbohE%2C OsRbohE%2C OsNox3%2C Nox3%2C OsRboh3%2C Rboh3;Oryzabase Gene Name Synonym(s)=Respiratory Burst Oxidase Homolog E%2C NADPH oxidase 3;Note=Similar to Respiratory burst oxidase-like protein J.;Transcript_evidence=AK066013 (DDBJ%2C Best hit);ORF_evidence=B2D0P0 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=CytoChrome b245%2C heavy chain (IPR000778),FAD-binding 8 (IPR013112),Ferric reductase%2C NAD binding (IPR013121),Flavoprotein transmembrane component (IPR013130),Ferredoxin reductase-type FAD-binding domain (IPR017927),Riboflavin synthase-like beta-barrel (IPR017938);NIAS_FLcDNA=J013047I12;Oryzabase=10486;Expression=AK066013;TENOR=Os01t0835500-03;KEGG=Os01t0835500-03
Chr01	irgsp1_rep	five_prime_UTR	35814674	35814674	.	+	.	Parent=Os01t0835500-03
Chr01	irgsp1_rep	CDS	35814675	35815607	.	+	0	Parent=Os01t0835500-03
Chr01	irgsp1_rep	CDS	35815695	35815790	.	+	0	Parent=Os01t0835500-03
Chr01	irgsp1_rep	CDS	35815883	35815998	.	+	0	Parent=Os01t0835500-03
Chr01	irgsp1_rep	CDS	35816086	35816188	.	+	1	Parent=Os01t0835500-03
Chr01	irgsp1_rep	CDS	35816311	35816399	.	+	0	Parent=Os01t0835500-03
Chr01	irgsp1_rep	CDS	35816491	35816641	.	+	1	Parent=Os01t0835500-03
Chr01	irgsp1_rep	CDS	35816736	35816882	.	+	0	Parent=Os01t0835500-03
Chr01	irgsp1_rep	CDS	35816979	35817107	.	+	0	Parent=Os01t0835500-03
Chr01	irgsp1_rep	CDS	35817192	35817270	.	+	0	Parent=Os01t0835500-03
Chr01	irgsp1_rep	CDS	35817357	35817466	.	+	2	Parent=Os01t0835500-03
Chr01	irgsp1_rep	three_prime_UTR	35817467	35817706	.	+	.	Parent=Os01t0835500-03
Chr01	irgsp1_rep	mRNA	35817508	35820865	.	-	.	ID=Os01t0835600-01;Name=Os01t0835600-01;Locus_id=Os01g0835600;Note=AT hook%2C DNA-binding%2C conserved site domain containing protein.;Transcript_evidence=AK064796 (DDBJ%2C Best hit);ORF_evidence=A2WWR1 (UniProt);GO=Molecular Function: DNA binding (GO:0003677);InterPro=AT hook%2C DNA-binding motif (IPR017956),AT hook-like (IPR020478);NIAS_FLcDNA=J013000C20;Expression=AK064796;TENOR=Os01t0835600-01;KEGG=Os01t0835600-01
Chr01	irgsp1_rep	five_prime_UTR	35819235	35820865	.	-	.	Parent=Os01t0835600-01
Chr01	irgsp1_rep	five_prime_UTR	35818519	35818562	.	-	.	Parent=Os01t0835600-01
Chr01	irgsp1_rep	CDS	35817667	35818518	.	-	0	Parent=Os01t0835600-01
Chr01	irgsp1_rep	three_prime_UTR	35817508	35817666	.	-	.	Parent=Os01t0835600-01
Chr01	irgsp1_rep	mRNA	35817467	35820858	.	-	.	ID=Os01t0835600-02;Name=Os01t0835600-02;Locus_id=Os01g0835600;Note=AT hook%2C DNA-binding%2C conserved site domain containing protein.;Transcript_evidence=AK121745 (DDBJ%2C Best hit),AK061927 (DDBJ%2C Best hit);ORF_evidence=A2WWR1 (UniProt);GO=Molecular Function: DNA binding (GO:0003677);InterPro=AT hook%2C DNA-binding motif (IPR017956),AT hook-like (IPR020478);NIAS_FLcDNA=J033086E04,001-042-C05;Expression=AK121745;TENOR=Os01t0835600-02;KEGG=Os01t0835600-02
Chr01	irgsp1_rep	five_prime_UTR	35820508	35820858	.	-	.	Parent=Os01t0835600-02
Chr01	irgsp1_rep	five_prime_UTR	35818519	35818562	.	-	.	Parent=Os01t0835600-02
Chr01	irgsp1_rep	CDS	35817667	35818518	.	-	0	Parent=Os01t0835600-02
Chr01	irgsp1_rep	three_prime_UTR	35817467	35817666	.	-	.	Parent=Os01t0835600-02
Chr01	irgsp1_rep	mRNA	35816630	35820858	.	-	.	ID=Os01t0835600-03;Name=Os01t0835600-03;Locus_id=Os01g0835600;Note=AT hook%2C DNA-binding%2C conserved site domain containing protein.;Transcript_evidence=AK064222 (DDBJ%2C Best hit);ORF_evidence=A2WWR1 (UniProt);GO=Molecular Function: DNA binding (GO:0003677);InterPro=AT hook%2C DNA-binding motif (IPR017956),AT hook-like (IPR020478);NIAS_FLcDNA=002-104-G02;Expression=AK064222;TENOR=Os01t0835600-03;KEGG=Os01t0835600-03
Chr01	irgsp1_rep	five_prime_UTR	35820508	35820858	.	-	.	Parent=Os01t0835600-03
Chr01	irgsp1_rep	five_prime_UTR	35818519	35818562	.	-	.	Parent=Os01t0835600-03
Chr01	irgsp1_rep	CDS	35817667	35818518	.	-	0	Parent=Os01t0835600-03
Chr01	irgsp1_rep	three_prime_UTR	35817003	35817666	.	-	.	Parent=Os01t0835600-03
Chr01	irgsp1_rep	three_prime_UTR	35816630	35816907	.	-	.	Parent=Os01t0835600-03
Chr01	irgsp1_rep	mRNA	35814482	35818275	.	-	.	ID=Os01t0835600-05;Name=Os01t0835600-05;Locus_id=Os01g0835600;Note=AT hook%2C DNA-binding%2C conserved site domain containing protein.;Transcript_evidence=AK119267 (DDBJ%2C Best hit);ORF_evidence=longestORF;GO=Molecular Function: DNA binding (GO:0003677);InterPro=AT hook%2C DNA-binding motif (IPR017956),AT hook-like (IPR020478);NIAS_FLcDNA=001-130-A07;Expression=AK119267;TENOR=Os01t0835600-05;KEGG=Os01t0835600-05
Chr01	irgsp1_rep	five_prime_UTR	35818195	35818275	.	-	.	Parent=Os01t0835600-05
Chr01	irgsp1_rep	CDS	35817667	35818194	.	-	0	Parent=Os01t0835600-05
Chr01	irgsp1_rep	three_prime_UTR	35817003	35817666	.	-	.	Parent=Os01t0835600-05
Chr01	irgsp1_rep	three_prime_UTR	35816752	35816907	.	-	.	Parent=Os01t0835600-05
Chr01	irgsp1_rep	three_prime_UTR	35814482	35816207	.	-	.	Parent=Os01t0835600-05
Chr01	irgsp1_rep	mRNA	35822763	35823507	.	-	.	ID=Os01t0835651-00;Name=Os01t0835651-00;Locus_id=Os01g0835651;Note=Non-protein coding transcript.;Transcript_evidence=CT834860 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os01t0835651-00
Chr01	irgsp1_rep	exon	35822763	35823507	.	-	.	Parent=Os01t0835651-00
Chr01	irgsp1_rep	mRNA	35827222	35828772	.	-	.	ID=Os01t0835700-01;Name=Os01t0835700-01;Locus_id=Os01g0835700;Oryzabase Gene Symbol Synonym(s)=OsCCT01%2C OsCMF1;Oryzabase Gene Name Synonym(s)=CCT domain-containing gene 1%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 1%2C CCT domain protein 1%2C CCT MOTIF FAMILY (CMF) gene 1;Note=CCT domain containing protein.;Transcript_evidence=AK109941 (DDBJ%2C Best hit);ORF_evidence=NP_001148245.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=CCT domain (IPR010402);NIAS_FLcDNA=002-154-E04;Oryzabase=19168;Expression=AK109941;TENOR=Os01t0835700-01;KEGG=Os01t0835700-01
Chr01	irgsp1_rep	five_prime_UTR	35828718	35828772	.	-	.	Parent=Os01t0835700-01
Chr01	irgsp1_rep	CDS	35828265	35828717	.	-	0	Parent=Os01t0835700-01
Chr01	irgsp1_rep	CDS	35827988	35828161	.	-	0	Parent=Os01t0835700-01
Chr01	irgsp1_rep	CDS	35827522	35827902	.	-	0	Parent=Os01t0835700-01
Chr01	irgsp1_rep	three_prime_UTR	35827222	35827521	.	-	.	Parent=Os01t0835700-01
Chr01	irgsp1_rep	mRNA	35832991	35836375	.	-	.	ID=Os01t0835800-01;Name=Os01t0835800-01;Locus_id=Os01g0835800;Note=Hypothetical conserved gene.;Transcript_evidence=AK288705 (DDBJ%2C Best hit);ORF_evidence=Q5QMF3 (UniProt);InterPro=KIP1-like (IPR011684);NIAS_FLcDNA=J090061L13;TENOR=Os01t0835800-01;KEGG=Os01t0835800-01
Chr01	irgsp1_rep	five_prime_UTR	35836036	35836375	.	-	.	Parent=Os01t0835800-01
Chr01	irgsp1_rep	CDS	35835942	35836035	.	-	0	Parent=Os01t0835800-01
Chr01	irgsp1_rep	CDS	35833254	35835682	.	-	2	Parent=Os01t0835800-01
Chr01	irgsp1_rep	three_prime_UTR	35832991	35833253	.	-	.	Parent=Os01t0835800-01
Chr01	irgsp1_rep	mRNA	35840539	35841246	.	+	.	ID=Os01t0835900-00;Name=Os01t0835900-00;Locus_id=Os01g0835900;Oryzabase Gene Name Synonym(s)=Histone H4;Note=Similar to Histone H4.;Transcript_evidence=CU405994 (DDBJ%2C Best hit);ORF_evidence=XP_002310853.1 (RefSeq);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H4 (IPR001951),Histone core (IPR007125),Histone-fold (IPR009072),Histone H4%2C conserved site (IPR019809);Oryzabase=17632;TENOR=Os01t0835900-00;KEGG=Os01t0835900-00
Chr01	irgsp1_rep	five_prime_UTR	35840539	35840622	.	+	.	Parent=Os01t0835900-00
Chr01	irgsp1_rep	CDS	35840623	35840934	.	+	0	Parent=Os01t0835900-00
Chr01	irgsp1_rep	three_prime_UTR	35840935	35841246	.	+	.	Parent=Os01t0835900-00
Chr01	irgsp1_rep	mRNA	35844675	35845342	.	+	.	ID=Os01t0836400-01;Name=Os01t0836400-01;Locus_id=Os01g0836400;Note=Hypothetical conserved gene.;Transcript_evidence=AK068741 (DDBJ%2C Best hit);ORF_evidence=Q5QMF1 (UniProt);NIAS_FLcDNA=J013168I20;TENOR=Os01t0836400-01;KEGG=Os01t0836400-01
Chr01	irgsp1_rep	five_prime_UTR	35844675	35844794	.	+	.	Parent=Os01t0836400-01
Chr01	irgsp1_rep	CDS	35844795	35845088	.	+	0	Parent=Os01t0836400-01
Chr01	irgsp1_rep	three_prime_UTR	35845089	35845342	.	+	.	Parent=Os01t0836400-01
Chr01	irgsp1_rep	mRNA	35845280	35854963	.	+	.	ID=Os01t0836400-02;Name=Os01t0836400-02;Locus_id=Os01g0836400;Note=SAC3/GANP family protein.;Transcript_evidence=AK073540 (DDBJ%2C Best hit);ORF_evidence=B8ABQ2 (UniProt);InterPro=SAC3/GANP/Nin1/mts3/eIF-3 p25 (IPR005062);NIAS_FLcDNA=J033042J20;Expression=AK073540;TENOR=Os01t0836400-02;KEGG=Os01t0836400-02
Chr01	irgsp1_rep	five_prime_UTR	35845280	35845612	.	+	.	Parent=Os01t0836400-02
Chr01	irgsp1_rep	CDS	35845613	35845666	.	+	0	Parent=Os01t0836400-02
Chr01	irgsp1_rep	CDS	35847234	35848049	.	+	0	Parent=Os01t0836400-02
Chr01	irgsp1_rep	CDS	35848186	35848710	.	+	0	Parent=Os01t0836400-02
Chr01	irgsp1_rep	CDS	35849013	35849111	.	+	0	Parent=Os01t0836400-02
Chr01	irgsp1_rep	CDS	35850102	35850205	.	+	0	Parent=Os01t0836400-02
Chr01	irgsp1_rep	CDS	35851262	35851439	.	+	1	Parent=Os01t0836400-02
Chr01	irgsp1_rep	CDS	35851515	35851985	.	+	0	Parent=Os01t0836400-02
Chr01	irgsp1_rep	CDS	35852124	35852264	.	+	0	Parent=Os01t0836400-02
Chr01	irgsp1_rep	CDS	35853031	35853090	.	+	0	Parent=Os01t0836400-02
Chr01	irgsp1_rep	CDS	35853554	35853684	.	+	0	Parent=Os01t0836400-02
Chr01	irgsp1_rep	CDS	35853806	35853971	.	+	1	Parent=Os01t0836400-02
Chr01	irgsp1_rep	three_prime_UTR	35853972	35854265	.	+	.	Parent=Os01t0836400-02
Chr01	irgsp1_rep	three_prime_UTR	35854347	35854963	.	+	.	Parent=Os01t0836400-02
Chr01	irgsp1_rep	mRNA	35861267	35863888	.	+	.	ID=Os01t0836600-01;Name=Os01t0836600-01;Locus_id=Os01g0836600;RAP-DB Gene Symbol Synonym(s)=OsABCG3;RAP-DB Gene Name Synonym(s)=ATP-binding cassette protein subfamily G member 3;CGSNL Gene Symbol=ABCG3;CGSNL Gene Name=ABC TRANSPORTER G FAMILY MEMBER 3;Oryzabase Gene Symbol Synonym(s)=OsABCG3;Oryzabase Gene Name Synonym(s)=ATP-binding cassette protein subfamily G member 3%2C ABC transporter superfamily ABCG subgroup member 3;Note=ATP-binding cassette (ABC) transporter%2C Half-size ABC transporter of the G family%2C Pollen wall formation;Transcript_evidence=AK067556;ORF_evidence=Q8S1S3;GO=Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Cellular Component: membrane (GO:0016020);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),ABC transporter-like (IPR003439),AAA+ ATPase domain (IPR003593),ABC-2 type transporter (IPR013525),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=J013111O15;Manual Curation=October 12%2C 2018;Literature_PMID=30311098,18299247;Oryzabase=9705;Expression=AK067556;TENOR=Os01t0836600-01;KEGG=Os01t0836600-01;Subcellular location=plasma membrane (GO:0005886)
Chr01	irgsp1_rep	five_prime_UTR	35861267	35861340	.	+	.	Parent=Os01t0836600-01
Chr01	irgsp1_rep	CDS	35861341	35863590	.	+	0	Parent=Os01t0836600-01
Chr01	irgsp1_rep	three_prime_UTR	35863591	35863888	.	+	.	Parent=Os01t0836600-01
Chr01	irgsp1_rep	mRNA	35868921	35869820	.	-	.	ID=Os01t0836700-00;Name=Os01t0836700-00;Locus_id=Os01g0836700;Note=Hypothetical conserved gene.;Transcript_evidence=AK354161 (DDBJ);ORF_evidence=Q5QME9 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Transmembrane receptor%2C eukaryota (IPR009637);TENOR=Os01t0836700-00;KEGG=Os01t0836700-00
Chr01	irgsp1_rep	five_prime_UTR	35869749	35869820	.	-	.	Parent=Os01t0836700-00
Chr01	irgsp1_rep	CDS	35868921	35869748	.	-	0	Parent=Os01t0836700-00
Chr01	irgsp1_rep	mRNA	35871455	35873198	.	-	.	ID=Os01t0836800-01;Name=Os01t0836800-01;Locus_id=Os01g0836800;Note=Transmembrane receptor%2C eukaryota domain containing protein.;Transcript_evidence=AK066629 (DDBJ%2C Best hit),AK098958 (DDBJ%2C Best hit),AK119783 (DDBJ%2C Best hit);ORF_evidence=NP_001150692.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Transmembrane receptor%2C eukaryota (IPR009637);NIAS_FLcDNA=J013071A10,J013063N02,002-173-F04;Expression=AK066629;TENOR=Os01t0836800-01;KEGG=Os01t0836800-01
Chr01	irgsp1_rep	five_prime_UTR	35873137	35873198	.	-	.	Parent=Os01t0836800-01
Chr01	irgsp1_rep	CDS	35871787	35873136	.	-	0	Parent=Os01t0836800-01
Chr01	irgsp1_rep	three_prime_UTR	35871455	35871786	.	-	.	Parent=Os01t0836800-01
Chr01	irgsp1_rep	mRNA	35871560	35873158	.	-	.	ID=Os01t0836800-04;Name=Os01t0836800-04;Locus_id=Os01g0836800;Note=Transmembrane receptor%2C eukaryota domain containing protein.;Transcript_evidence=AK061720 (DDBJ%2C Best hit),AK106145 (DDBJ%2C Best hit);ORF_evidence=NP_001150692.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Transmembrane receptor%2C eukaryota (IPR009637);NIAS_FLcDNA=001-038-A01,001-207-H02;Expression=AK061720;TENOR=Os01t0836800-04;KEGG=Os01t0836800-04
Chr01	irgsp1_rep	five_prime_UTR	35873137	35873158	.	-	.	Parent=Os01t0836800-04
Chr01	irgsp1_rep	CDS	35871787	35873136	.	-	0	Parent=Os01t0836800-04
Chr01	irgsp1_rep	three_prime_UTR	35871560	35871786	.	-	.	Parent=Os01t0836800-04
Chr01	irgsp1_rep	mRNA	35881024	35882412	.	+	.	ID=Os01t0836900-01;Name=Os01t0836900-01;Locus_id=Os01g0836900;Note=Conserved hypothetical protein.;Transcript_evidence=AK064231 (DDBJ%2C Best hit);ORF_evidence=A2WWR9 (UniProt);NIAS_FLcDNA=002-104-H06;Expression=AK064231;TENOR=Os01t0836900-01;KEGG=Os01t0836900-01
Chr01	irgsp1_rep	five_prime_UTR	35881024	35881098	.	+	.	Parent=Os01t0836900-01
Chr01	irgsp1_rep	CDS	35881099	35882193	.	+	0	Parent=Os01t0836900-01
Chr01	irgsp1_rep	three_prime_UTR	35882194	35882412	.	+	.	Parent=Os01t0836900-01
Chr01	irgsp1_rep	mRNA	35885095	35888562	.	-	.	ID=Os01t0837000-01;Name=Os01t0837000-01;Locus_id=Os01g0837000;Oryzabase Gene Symbol Synonym(s)=OsNPR4%2C NPR4;Oryzabase Gene Name Synonym(s)=NPR1-like gene 4;Note=Ankyrin repeat containing protein.;Transcript_evidence=AK243678 (DDBJ%2C Best hit);ORF_evidence=A2CIR5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J100090F14;Oryzabase=11882;TENOR=Os01t0837000-01;KEGG=Os01t0837000-01
Chr01	irgsp1_rep	five_prime_UTR	35888361	35888562	.	-	.	Parent=Os01t0837000-01
Chr01	irgsp1_rep	CDS	35888339	35888360	.	-	0	Parent=Os01t0837000-01
Chr01	irgsp1_rep	CDS	35887850	35888251	.	-	2	Parent=Os01t0837000-01
Chr01	irgsp1_rep	CDS	35886661	35887073	.	-	2	Parent=Os01t0837000-01
Chr01	irgsp1_rep	CDS	35885261	35886094	.	-	0	Parent=Os01t0837000-01
Chr01	irgsp1_rep	three_prime_UTR	35885095	35885260	.	-	.	Parent=Os01t0837000-01
Chr01	irgsp1_rep	mRNA	35887937	35891365	.	+	.	ID=Os01t0837100-00;Name=Os01t0837100-00;Locus_id=Os01g0837100;Oryzabase Gene Symbol Synonym(s)=OsPLL2%2C PLL2;Oryzabase Gene Name Synonym(s)=Pectate lyase-like 2;Note=Similar to predicted protein.;Transcript_evidence=BT018120 (DDBJ);ORF_evidence=B6TJY9 (UniProt);InterPro=Pectate lyase/Amb allergen (IPR002022),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),AmbAllergen (IPR018082);Oryzabase=22487;TENOR=Os01t0837100-00;KEGG=Os01t0837100-00 (EC:4.2.2.2)
Chr01	irgsp1_rep	CDS	35887937	35888132	.	+	0	Parent=Os01t0837100-00
Chr01	irgsp1_rep	CDS	35889860	35889964	.	+	2	Parent=Os01t0837100-00
Chr01	irgsp1_rep	CDS	35890051	35890634	.	+	2	Parent=Os01t0837100-00
Chr01	irgsp1_rep	CDS	35890869	35890937	.	+	0	Parent=Os01t0837100-00
Chr01	irgsp1_rep	CDS	35891078	35891365	.	+	0	Parent=Os01t0837100-00
Chr01	irgsp1_rep	mRNA	35894448	35895172	.	+	.	ID=Os01t0837200-01;Name=Os01t0837200-01;Locus_id=Os01g0837200;Note=Similar to esterase/lipase/thioesterase family protein.;Transcript_evidence=AK062368 (DDBJ%2C Best hit);ORF_evidence=NP_191078.1 (RefSeq);NIAS_FLcDNA=001-102-A01;TENOR=Os01t0837200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	35894448	35894471	.	+	0	Parent=Os01t0837200-01
Chr01	irgsp1_rep	CDS	35894555	35894653	.	+	0	Parent=Os01t0837200-01
Chr01	irgsp1_rep	CDS	35894844	35895080	.	+	0	Parent=Os01t0837200-01
Chr01	irgsp1_rep	three_prime_UTR	35895081	35895172	.	+	.	Parent=Os01t0837200-01
Chr01	irgsp1_rep	mRNA	35897015	35897988	.	+	.	ID=Os01t0837300-01;Name=Os01t0837300-01;Locus_id=Os01g0837300;Oryzabase Gene Symbol Synonym(s)=UXS-4%2C OsUXS4;Oryzabase Gene Name Synonym(s)=UDP-glucuronic acid decarboxylase 4%2C UDP-xylose synthase 4;Note=Similar to UDP-glucuronic acid decarboxylase 1.;Transcript_evidence=AK062894 (DDBJ%2C Best hit);ORF_evidence=NP_001151221.1 (RefSeq);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-108-E07;Oryzabase=13975;Expression=AK062894;TENOR=Os01t0837300-01;KEGG=Os01t0837300-01 (EC:4.1.1.35)
Chr01	irgsp1_rep	five_prime_UTR	35897015	35897057	.	+	.	Parent=Os01t0837300-01
Chr01	irgsp1_rep	CDS	35897058	35897657	.	+	0	Parent=Os01t0837300-01
Chr01	irgsp1_rep	three_prime_UTR	35897658	35897988	.	+	.	Parent=Os01t0837300-01
Chr01	irgsp1_rep	mRNA	35897026	35900580	.	+	.	ID=Os01t0837300-02;Name=Os01t0837300-02;Locus_id=Os01g0837300;Oryzabase Gene Symbol Synonym(s)=UXS-4%2C OsUXS4;Oryzabase Gene Name Synonym(s)=UDP-glucuronic acid decarboxylase 4%2C UDP-xylose synthase 4;Note=Similar to UDP-glucuronic acid decarboxylase 1.;Transcript_evidence=AK069181 (DDBJ%2C Best hit);ORF_evidence=NP_001151221.1 (RefSeq);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023008F13;Oryzabase=13975;Expression=AK069181;TENOR=Os01t0837300-02;KEGG=Os01t0837300-02 (EC:4.1.1.35)
Chr01	irgsp1_rep	five_prime_UTR	35897026	35897057	.	+	.	Parent=Os01t0837300-02
Chr01	irgsp1_rep	CDS	35897058	35897657	.	+	0	Parent=Os01t0837300-02
Chr01	irgsp1_rep	three_prime_UTR	35897658	35898554	.	+	.	Parent=Os01t0837300-02
Chr01	irgsp1_rep	three_prime_UTR	35898644	35898723	.	+	.	Parent=Os01t0837300-02
Chr01	irgsp1_rep	three_prime_UTR	35899206	35899289	.	+	.	Parent=Os01t0837300-02
Chr01	irgsp1_rep	three_prime_UTR	35899385	35899459	.	+	.	Parent=Os01t0837300-02
Chr01	irgsp1_rep	three_prime_UTR	35899891	35899983	.	+	.	Parent=Os01t0837300-02
Chr01	irgsp1_rep	three_prime_UTR	35900056	35900580	.	+	.	Parent=Os01t0837300-02
Chr01	irgsp1_rep	mRNA	35898691	35900575	.	+	.	ID=Os01t0837300-03;Name=Os01t0837300-03;Locus_id=Os01g0837300;Oryzabase Gene Symbol Synonym(s)=UXS-4%2C OsUXS4;Oryzabase Gene Name Synonym(s)=UDP-glucuronic acid decarboxylase 4%2C UDP-xylose synthase 4;Note=Similar to UDP-glucuronic acid decarboxylase 1.;Transcript_evidence=AK104675 (DDBJ%2C Best hit);ORF_evidence=NP_001151221.1 (RefSeq);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509);NIAS_FLcDNA=001-031-H12;Oryzabase=13975;Expression=AK104675;TENOR=Os01t0837300-03;KEGG=Os01t0837300-03 (EC:4.1.1.35)
Chr01	irgsp1_rep	CDS	35898691	35898723	.	+	0	Parent=Os01t0837300-03
Chr01	irgsp1_rep	CDS	35899206	35899289	.	+	0	Parent=Os01t0837300-03
Chr01	irgsp1_rep	CDS	35899385	35899459	.	+	0	Parent=Os01t0837300-03
Chr01	irgsp1_rep	CDS	35899891	35899983	.	+	0	Parent=Os01t0837300-03
Chr01	irgsp1_rep	CDS	35900056	35900244	.	+	0	Parent=Os01t0837300-03
Chr01	irgsp1_rep	three_prime_UTR	35900245	35900575	.	+	.	Parent=Os01t0837300-03
Chr01	irgsp1_rep	mRNA	35897031	35900226	.	-	.	ID=Os01t0837350-00;Name=Os01t0837350-00;Locus_id=Os01g0837350;Note=Hypothetical protein.;Transcript_evidence=tplb0036f05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0837350-00
Chr01	irgsp1_rep	five_prime_UTR	35900040	35900226	.	-	.	Parent=Os01t0837350-00
Chr01	irgsp1_rep	five_prime_UTR	35899813	35899974	.	-	.	Parent=Os01t0837350-00
Chr01	irgsp1_rep	five_prime_UTR	35899177	35899293	.	-	.	Parent=Os01t0837350-00
Chr01	irgsp1_rep	five_prime_UTR	35898664	35898698	.	-	.	Parent=Os01t0837350-00
Chr01	irgsp1_rep	five_prime_UTR	35898412	35898571	.	-	.	Parent=Os01t0837350-00
Chr01	irgsp1_rep	five_prime_UTR	35897540	35897626	.	-	.	Parent=Os01t0837350-00
Chr01	irgsp1_rep	CDS	35897243	35897539	.	-	0	Parent=Os01t0837350-00
Chr01	irgsp1_rep	three_prime_UTR	35897031	35897242	.	-	.	Parent=Os01t0837350-00
Chr01	irgsp1_rep	mRNA	35902972	35908325	.	+	.	ID=Os01t0837500-01;Name=Os01t0837500-01;Locus_id=Os01g0837500;Oryzabase Gene Symbol Synonym(s)=OsRuvBL1a%2C RuvBL1a%2C RUVBL1A;Oryzabase Gene Name Synonym(s)=RuvB-like protein 1a%2C RuvB-like 1a;Note=Similar to Ruvbl1 protein.;Transcript_evidence=AK105439 (DDBJ%2C Best hit);ORF_evidence=B7FAF4 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: DNA helicase activity (GO:0003678),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),TIP49%2C C-terminal (IPR010339),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=001-124-H05;Oryzabase=22272;Expression=AK105439;TENOR=Os01t0837500-01;KEGG=Os01t0837500-01
Chr01	irgsp1_rep	five_prime_UTR	35902972	35903060	.	+	.	Parent=Os01t0837500-01
Chr01	irgsp1_rep	CDS	35903061	35903141	.	+	0	Parent=Os01t0837500-01
Chr01	irgsp1_rep	CDS	35903289	35903477	.	+	0	Parent=Os01t0837500-01
Chr01	irgsp1_rep	CDS	35904558	35904689	.	+	0	Parent=Os01t0837500-01
Chr01	irgsp1_rep	CDS	35904834	35904983	.	+	0	Parent=Os01t0837500-01
Chr01	irgsp1_rep	CDS	35905305	35905460	.	+	0	Parent=Os01t0837500-01
Chr01	irgsp1_rep	CDS	35906203	35906337	.	+	0	Parent=Os01t0837500-01
Chr01	irgsp1_rep	CDS	35906447	35906512	.	+	0	Parent=Os01t0837500-01
Chr01	irgsp1_rep	CDS	35906757	35906863	.	+	0	Parent=Os01t0837500-01
Chr01	irgsp1_rep	CDS	35906999	35907098	.	+	1	Parent=Os01t0837500-01
Chr01	irgsp1_rep	CDS	35907177	35907268	.	+	0	Parent=Os01t0837500-01
Chr01	irgsp1_rep	CDS	35907767	35907836	.	+	1	Parent=Os01t0837500-01
Chr01	irgsp1_rep	CDS	35907970	35908059	.	+	0	Parent=Os01t0837500-01
Chr01	irgsp1_rep	three_prime_UTR	35908060	35908325	.	+	.	Parent=Os01t0837500-01
Chr01	irgsp1_rep	mRNA	35902972	35905051	.	+	.	ID=Os01t0837500-02;Name=Os01t0837500-02;Locus_id=Os01g0837500;Oryzabase Gene Symbol Synonym(s)=OsRuvBL1a%2C RuvBL1a%2C RUVBL1A;Oryzabase Gene Name Synonym(s)=RuvB-like protein 1a%2C RuvB-like 1a;Note=Similar to DNA helicase%2C TBP-interacting protein.;Transcript_evidence=AK064668 (DDBJ%2C Best hit);ORF_evidence=B7FAF4 (UniProt);GO=Molecular Function: DNA helicase activity (GO:0003678),Molecular Function: ATP binding (GO:0005524);InterPro=TIP49%2C C-terminal (IPR010339),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=002-115-C01;Oryzabase=22272;Expression=AK064668;TENOR=Os01t0837500-02;KEGG=Os01t0837500-02
Chr01	irgsp1_rep	five_prime_UTR	35902972	35903060	.	+	.	Parent=Os01t0837500-02
Chr01	irgsp1_rep	CDS	35903061	35903141	.	+	0	Parent=Os01t0837500-02
Chr01	irgsp1_rep	CDS	35903289	35903477	.	+	0	Parent=Os01t0837500-02
Chr01	irgsp1_rep	CDS	35904558	35904689	.	+	0	Parent=Os01t0837500-02
Chr01	irgsp1_rep	CDS	35904834	35905028	.	+	0	Parent=Os01t0837500-02
Chr01	irgsp1_rep	three_prime_UTR	35905029	35905051	.	+	.	Parent=Os01t0837500-02
Chr01	irgsp1_rep	mRNA	35912084	35913241	.	+	.	ID=Os01t0837600-01;Name=Os01t0837600-01;Locus_id=Os01g0837600;Note=Similar to plant-specific domain TIGR01589 family protein.;Transcript_evidence=AK108007 (DDBJ%2C Best hit);ORF_evidence=NP_001148858.1 (RefSeq);InterPro=Conserved hypothetical protein CHP01589%2C plant (IPR006476);NIAS_FLcDNA=002-135-G12;Expression=AK108007;TENOR=Os01t0837600-01;KEGG=Os01t0837600-01
Chr01	irgsp1_rep	five_prime_UTR	35912084	35912278	.	+	.	Parent=Os01t0837600-01
Chr01	irgsp1_rep	CDS	35912279	35912338	.	+	0	Parent=Os01t0837600-01
Chr01	irgsp1_rep	CDS	35912472	35912577	.	+	0	Parent=Os01t0837600-01
Chr01	irgsp1_rep	CDS	35912923	35913065	.	+	2	Parent=Os01t0837600-01
Chr01	irgsp1_rep	three_prime_UTR	35913066	35913241	.	+	.	Parent=Os01t0837600-01
Chr01	irgsp1_rep	mRNA	35916711	35917028	.	-	.	ID=Os01t0837700-00;Name=Os01t0837700-00;Locus_id=Os01g0837700;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=Q943N0 (UniProt);TENOR=Os01t0837700-00;KEGG=Os01t0837700-00
Chr01	irgsp1_rep	CDS	35916711	35917028	.	-	0	Parent=Os01t0837700-00
Chr01	irgsp1_rep	mRNA	35917435	35921969	.	-	.	ID=Os01t0837800-01;Name=Os01t0837800-01;Locus_id=Os01g0837800;RAP-DB Gene Symbol Synonym(s)=OsMTP11;RAP-DB Gene Name Synonym(s)=metal tolerance protein 11;CGSNL Gene Symbol=MTP11;CGSNL Gene Name=METAL TOLERANCE PROTEIN 11;Oryzabase Gene Symbol Synonym(s)=OsMTP11;Oryzabase Gene Name Synonym(s)=metal tolerance protein 11;Note=Metal tolerance protein%2C Manganese transporter%2C Mn-cation diffusion facilitator (CDF )%2C Mn and other heavy metal tolerance and homeostasis;Transcript_evidence=AK064840;ORF_evidence=Q5NA18;GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Molecular Function: cation transmembrane transporter activity (GO:0008324),Cellular Component: integral component of membrane (GO:0016021);InterPro=Cation efflux protein (IPR002524),Cation efflux protein%2C cytoplasmic domain (IPR027470);NIAS_FLcDNA=J013000G01;Manual Curation=June 14%2C 2017;Literature_PMID=28394944;Oryzabase=13413;Expression=AK064840;TENOR=Os01t0837800-01;KEGG=Os01t0837800-01;Subcellular location=cytoplasm (GO:0005737)
Chr01	irgsp1_rep	five_prime_UTR	35921774	35921969	.	-	.	Parent=Os01t0837800-01
Chr01	irgsp1_rep	CDS	35921554	35921773	.	-	0	Parent=Os01t0837800-01
Chr01	irgsp1_rep	CDS	35920243	35920358	.	-	2	Parent=Os01t0837800-01
Chr01	irgsp1_rep	CDS	35919903	35920148	.	-	0	Parent=Os01t0837800-01
Chr01	irgsp1_rep	CDS	35919314	35919394	.	-	0	Parent=Os01t0837800-01
Chr01	irgsp1_rep	CDS	35918898	35919131	.	-	0	Parent=Os01t0837800-01
Chr01	irgsp1_rep	CDS	35917733	35918083	.	-	0	Parent=Os01t0837800-01
Chr01	irgsp1_rep	three_prime_UTR	35917435	35917732	.	-	.	Parent=Os01t0837800-01
Chr01	irgsp1_rep	mRNA	35917514	35920358	.	-	.	ID=Os01t0837800-02;Name=Os01t0837800-02;Locus_id=Os01g0837800;CGSNL Gene Symbol=MTP11;CGSNL Gene Name=METAL TOLERANCE PROTEIN 11;Oryzabase Gene Symbol Synonym(s)=OsMTP11;Oryzabase Gene Name Synonym(s)=metal tolerance protein 11;Note=Similar to metal tolerance protein.;Transcript_evidence=AK061539 (DDBJ%2C Best hit);ORF_evidence=Q5NA18 (UniProt);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: cation transmembrane transporter activity (GO:0008324);InterPro=Cation efflux protein (IPR002524);NIAS_FLcDNA=006-310-G08;Oryzabase=13413;Expression=AK061539;TENOR=Os01t0837800-02;KEGG=Os01t0837800-02
Chr01	irgsp1_rep	five_prime_UTR	35920357	35920358	.	-	.	Parent=Os01t0837800-02
Chr01	irgsp1_rep	CDS	35920243	35920356	.	-	0	Parent=Os01t0837800-02
Chr01	irgsp1_rep	CDS	35919903	35920148	.	-	0	Parent=Os01t0837800-02
Chr01	irgsp1_rep	CDS	35919314	35919394	.	-	0	Parent=Os01t0837800-02
Chr01	irgsp1_rep	CDS	35918898	35919131	.	-	0	Parent=Os01t0837800-02
Chr01	irgsp1_rep	CDS	35917733	35918083	.	-	0	Parent=Os01t0837800-02
Chr01	irgsp1_rep	three_prime_UTR	35917514	35917732	.	-	.	Parent=Os01t0837800-02
Chr01	irgsp1_rep	mRNA	35925492	35929372	.	-	.	ID=Os01t0837900-01;Name=Os01t0837900-01;Locus_id=Os01g0837900;Note=Similar to Protein kinase AFC1 (EC 2.7.1.-).;Transcript_evidence=AK103207 (DDBJ%2C Best hit);ORF_evidence=NP_850695.2 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033122I09;Oryzabase=20449;Expression=AK103207;TENOR=Os01t0837900-01;KEGG=Os01t0837900-01 (EC:2.7.12.1)
Chr01	irgsp1_rep	five_prime_UTR	35929178	35929372	.	-	.	Parent=Os01t0837900-01
Chr01	irgsp1_rep	CDS	35929067	35929177	.	-	0	Parent=Os01t0837900-01
Chr01	irgsp1_rep	CDS	35928271	35928448	.	-	0	Parent=Os01t0837900-01
Chr01	irgsp1_rep	CDS	35927734	35927760	.	-	2	Parent=Os01t0837900-01
Chr01	irgsp1_rep	CDS	35927446	35927599	.	-	2	Parent=Os01t0837900-01
Chr01	irgsp1_rep	CDS	35927315	35927363	.	-	1	Parent=Os01t0837900-01
Chr01	irgsp1_rep	CDS	35927120	35927234	.	-	0	Parent=Os01t0837900-01
Chr01	irgsp1_rep	CDS	35926918	35927009	.	-	2	Parent=Os01t0837900-01
Chr01	irgsp1_rep	CDS	35926618	35926774	.	-	0	Parent=Os01t0837900-01
Chr01	irgsp1_rep	CDS	35926434	35926498	.	-	2	Parent=Os01t0837900-01
Chr01	irgsp1_rep	CDS	35926218	35926315	.	-	0	Parent=Os01t0837900-01
Chr01	irgsp1_rep	CDS	35925961	35926066	.	-	1	Parent=Os01t0837900-01
Chr01	irgsp1_rep	CDS	35925695	35925847	.	-	0	Parent=Os01t0837900-01
Chr01	irgsp1_rep	three_prime_UTR	35925492	35925694	.	-	.	Parent=Os01t0837900-01
Chr01	irgsp1_rep	mRNA	35923866	35925579	.	-	.	ID=Os01t0837900-02;Name=Os01t0837900-02;Locus_id=Os01g0837900;Note=Non-protein coding transcript.;Transcript_evidence=AK106580 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-111-D10;Oryzabase=20449;TENOR=Os01t0837900-02
Chr01	irgsp1_rep	exon	35923866	35925579	.	-	.	Parent=Os01t0837900-02
Chr01	irgsp1_rep	mRNA	35939939	35949979	.	+	.	ID=Os01t0838100-01;Name=Os01t0838100-01;Locus_id=Os01g0838100;Note=Conserved hypothetical protein.;Transcript_evidence=AK065393 (DDBJ%2C Best hit);ORF_evidence=Q7XS07 (UniProt);NIAS_FLcDNA=J013021M16;TENOR=Os01t0838100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	35939939	35940239	.	+	.	Parent=Os01t0838100-01
Chr01	irgsp1_rep	CDS	35940240	35940416	.	+	0	Parent=Os01t0838100-01
Chr01	irgsp1_rep	CDS	35940552	35940592	.	+	0	Parent=Os01t0838100-01
Chr01	irgsp1_rep	CDS	35940710	35940795	.	+	1	Parent=Os01t0838100-01
Chr01	irgsp1_rep	CDS	35940886	35940948	.	+	2	Parent=Os01t0838100-01
Chr01	irgsp1_rep	CDS	35941039	35941134	.	+	2	Parent=Os01t0838100-01
Chr01	irgsp1_rep	CDS	35941216	35941287	.	+	2	Parent=Os01t0838100-01
Chr01	irgsp1_rep	CDS	35941382	35941522	.	+	2	Parent=Os01t0838100-01
Chr01	irgsp1_rep	CDS	35946061	35946083	.	+	2	Parent=Os01t0838100-01
Chr01	irgsp1_rep	three_prime_UTR	35946084	35946204	.	+	.	Parent=Os01t0838100-01
Chr01	irgsp1_rep	three_prime_UTR	35946287	35946560	.	+	.	Parent=Os01t0838100-01
Chr01	irgsp1_rep	three_prime_UTR	35946651	35946753	.	+	.	Parent=Os01t0838100-01
Chr01	irgsp1_rep	three_prime_UTR	35946868	35946998	.	+	.	Parent=Os01t0838100-01
Chr01	irgsp1_rep	three_prime_UTR	35947125	35947206	.	+	.	Parent=Os01t0838100-01
Chr01	irgsp1_rep	three_prime_UTR	35947295	35947427	.	+	.	Parent=Os01t0838100-01
Chr01	irgsp1_rep	three_prime_UTR	35947520	35947674	.	+	.	Parent=Os01t0838100-01
Chr01	irgsp1_rep	three_prime_UTR	35947760	35948216	.	+	.	Parent=Os01t0838100-01
Chr01	irgsp1_rep	three_prime_UTR	35948300	35948382	.	+	.	Parent=Os01t0838100-01
Chr01	irgsp1_rep	three_prime_UTR	35949017	35949119	.	+	.	Parent=Os01t0838100-01
Chr01	irgsp1_rep	three_prime_UTR	35949207	35949244	.	+	.	Parent=Os01t0838100-01
Chr01	irgsp1_rep	three_prime_UTR	35949411	35949498	.	+	.	Parent=Os01t0838100-01
Chr01	irgsp1_rep	three_prime_UTR	35949581	35949979	.	+	.	Parent=Os01t0838100-01
Chr01	irgsp1_rep	mRNA	35952915	35953433	.	-	.	ID=Os01t0838200-00;Name=Os01t0838200-00;Locus_id=Os01g0838200;Note=Conserved hypothetical protein.;Transcript_evidence=EU968266 (DDBJ);ORF_evidence=NP_001044744.1 (RefSeq);TENOR=Os01t0838200-00;KEGG=Os01t0838200-00
Chr01	irgsp1_rep	five_prime_UTR	35953429	35953433	.	-	.	Parent=Os01t0838200-00
Chr01	irgsp1_rep	CDS	35953153	35953428	.	-	0	Parent=Os01t0838200-00
Chr01	irgsp1_rep	three_prime_UTR	35952915	35953152	.	-	.	Parent=Os01t0838200-00
Chr01	irgsp1_rep	mRNA	35956631	35957194	.	+	.	ID=Os01t0838300-01;Name=Os01t0838300-01;Locus_id=Os01g0838300;Note=Hypothetical protein.;Transcript_evidence=AK107798 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-133-D12;Expression=AK107798;TENOR=Os01t0838300-01;KEGG=Os01t0838300-01
Chr01	irgsp1_rep	CDS	35956631	35956891	.	+	0	Parent=Os01t0838300-01
Chr01	irgsp1_rep	three_prime_UTR	35956892	35957194	.	+	.	Parent=Os01t0838300-01
Chr01	irgsp1_rep	mRNA	35958635	35959019	.	-	.	ID=Os01t0838350-01;Name=Os01t0838350-01;Locus_id=Os01g0838350;CGSNL Gene Symbol=PI1;CGSNL Gene Name=PHOSPHATE-LIMITATION INDUCIBLE GENE 1;Oryzabase Gene Symbol Synonym(s)=OsIPS2%2C IPS2%2C OsPI1;Oryzabase Gene Name Synonym(s)=Oryza sativa Phosphate-limitation Inducible Gene 1%2C induced by phosphate starvation 2%2C phosphate starvation 2;Note=Conserved hypothetical protein.;Transcript_evidence=AK240849 (DDBJ%2C Best hit);ORF_evidence=NP_001172640.1 (RefSeq);NIAS_FLcDNA=J065020F01;Oryzabase=9860;TENOR=Os01t0838350-01;KEGG=Os01t0838350-01
Chr01	irgsp1_rep	five_prime_UTR	35959019	35959019	.	-	.	Parent=Os01t0838350-01
Chr01	irgsp1_rep	CDS	35958854	35959018	.	-	0	Parent=Os01t0838350-01
Chr01	irgsp1_rep	three_prime_UTR	35958635	35958853	.	-	.	Parent=Os01t0838350-01
Chr01	irgsp1_rep	mRNA	35960751	35962389	.	-	.	ID=Os01t0838400-01;Name=Os01t0838400-01;Locus_id=Os01g0838400;Note=Conserved hypothetical protein.;Transcript_evidence=AK100806 (DDBJ%2C Best hit);ORF_evidence=NP_001055644.1 (RefSeq);NIAS_FLcDNA=J023121L01;Expression=AK100806;TENOR=Os01t0838400-01;KEGG=Os01t0838400-01
Chr01	irgsp1_rep	CDS	35962192	35962389	.	-	0	Parent=Os01t0838400-01
Chr01	irgsp1_rep	three_prime_UTR	35960751	35962191	.	-	.	Parent=Os01t0838400-01
Chr01	irgsp1_rep	mRNA	35965949	35966946	.	-	.	ID=Os01t0838600-00;Name=Os01t0838600-00;Locus_id=Os01g0838600;CGSNL Gene Symbol=DLN26;CGSNL Gene Name=DLN REPRESSOR 26;Oryzabase Gene Symbol Synonym(s)=OsDLN26;Oryzabase Gene Name Synonym(s)=DLN repressor 26%2C DLN motif protein 26;Note=Zinc finger%2C C2H2-like domain containing protein.;Transcript_evidence=CT834905 (DDBJ%2C Best hit);ORF_evidence=Q84NH1 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);Oryzabase=23159;TENOR=Os01t0838600-00;KEGG=Os01t0838600-00
Chr01	irgsp1_rep	five_prime_UTR	35966847	35966946	.	-	.	Parent=Os01t0838600-00
Chr01	irgsp1_rep	CDS	35966193	35966846	.	-	0	Parent=Os01t0838600-00
Chr01	irgsp1_rep	three_prime_UTR	35965949	35966192	.	-	.	Parent=Os01t0838600-00
Chr01	irgsp1_rep	mRNA	35981651	35984194	.	+	.	ID=Os01t0838800-01;Name=Os01t0838800-01;Locus_id=Os01g0838800;Note=Similar to cDNA clone:J033065F01%2C full insert sequence (Fragment).;Transcript_evidence=AK066366 (DDBJ%2C Best hit);ORF_evidence=Q9MAX5 (UniProt);GO=Biological Process: transport (GO:0006810);InterPro=Longin-like (IPR011012),AP complex%2C mu/sigma subunit (IPR022775);NIAS_FLcDNA=J013067M01;Expression=AK066366;TENOR=Os01t0838800-01;KEGG=Os01t0838800-01
Chr01	irgsp1_rep	five_prime_UTR	35981651	35981774	.	+	.	Parent=Os01t0838800-01
Chr01	irgsp1_rep	CDS	35981775	35981777	.	+	0	Parent=Os01t0838800-01
Chr01	irgsp1_rep	CDS	35982031	35982190	.	+	0	Parent=Os01t0838800-01
Chr01	irgsp1_rep	CDS	35982834	35982981	.	+	2	Parent=Os01t0838800-01
Chr01	irgsp1_rep	CDS	35983086	35983167	.	+	1	Parent=Os01t0838800-01
Chr01	irgsp1_rep	three_prime_UTR	35983168	35983679	.	+	.	Parent=Os01t0838800-01
Chr01	irgsp1_rep	three_prime_UTR	35983805	35984194	.	+	.	Parent=Os01t0838800-01
Chr01	irgsp1_rep	mRNA	35981654	35984124	.	+	.	ID=Os01t0838800-02;Name=Os01t0838800-02;Locus_id=Os01g0838800;Note=Clathrin adaptor%2C sigma subunit/coatomer%2C zeta subunit domain containing protein.;Transcript_evidence=AK073775 (DDBJ%2C Best hit);ORF_evidence=Q9MAX5 (UniProt);GO=Biological Process: transport (GO:0006810);InterPro=Longin-like (IPR011012),AP complex%2C mu/sigma subunit (IPR022775);NIAS_FLcDNA=J033065F01;Expression=AK073775;TENOR=Os01t0838800-02;KEGG=Os01t0838800-02
Chr01	irgsp1_rep	five_prime_UTR	35981654	35981774	.	+	.	Parent=Os01t0838800-02
Chr01	irgsp1_rep	CDS	35981775	35981777	.	+	0	Parent=Os01t0838800-02
Chr01	irgsp1_rep	CDS	35982031	35982190	.	+	0	Parent=Os01t0838800-02
Chr01	irgsp1_rep	CDS	35982834	35982981	.	+	2	Parent=Os01t0838800-02
Chr01	irgsp1_rep	CDS	35983086	35983163	.	+	1	Parent=Os01t0838800-02
Chr01	irgsp1_rep	CDS	35983595	35983679	.	+	1	Parent=Os01t0838800-02
Chr01	irgsp1_rep	CDS	35983805	35983864	.	+	0	Parent=Os01t0838800-02
Chr01	irgsp1_rep	three_prime_UTR	35983865	35984124	.	+	.	Parent=Os01t0838800-02
Chr01	irgsp1_rep	mRNA	35984258	35987592	.	-	.	ID=Os01t0838900-01;Name=Os01t0838900-01;Locus_id=Os01g0838900;Note=Trp repressor/replication initiator domain containing protein.;Transcript_evidence=AK073490 (DDBJ%2C Best hit);ORF_evidence=B8AC45 (UniProt);GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Putative harbinger transposase-derived nuclease (IPR006912);NIAS_FLcDNA=J033039F18;Expression=AK073490;TENOR=Os01t0838900-01;KEGG=Os01t0838900-01
Chr01	irgsp1_rep	five_prime_UTR	35987501	35987592	.	-	.	Parent=Os01t0838900-01
Chr01	irgsp1_rep	CDS	35987368	35987500	.	-	0	Parent=Os01t0838900-01
Chr01	irgsp1_rep	CDS	35984387	35985444	.	-	2	Parent=Os01t0838900-01
Chr01	irgsp1_rep	three_prime_UTR	35984258	35984386	.	-	.	Parent=Os01t0838900-01
Chr01	irgsp1_rep	mRNA	36001242	36002101	.	+	.	ID=Os01t0839100-01;Name=Os01t0839100-01;Locus_id=Os01g0839100;CGSNL Gene Symbol=ZFP179;CGSNL Gene Name=ZINC FINGER PROTEIN 179;Oryzabase Gene Symbol Synonym(s)=OsZFP179%2C DLN27%2C OsDLN27;Oryzabase Gene Name Synonym(s)=zinc finger protein ZFP179%2C DLN repressor 27%2C DLN motif protein 27;Note=Zinc finger%2C C2H2 domain containing protein.;Transcript_evidence=AK108227 (DDBJ%2C Best hit);ORF_evidence=Q8S9G9 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=002-140-F08;Oryzabase=12117;TENOR=Os01t0839100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	36001242	36001299	.	+	.	Parent=Os01t0839100-01
Chr01	irgsp1_rep	CDS	36001300	36001815	.	+	0	Parent=Os01t0839100-01
Chr01	irgsp1_rep	three_prime_UTR	36001816	36002101	.	+	.	Parent=Os01t0839100-01
Chr01	irgsp1_rep	mRNA	36002559	36005000	.	-	.	ID=Os01t0839200-01;Name=Os01t0839200-01;Locus_id=Os01g0839200;RAP-DB Gene Symbol Synonym(s)=OsDSR2;RAP-DB Gene Name Synonym(s)=DUF966-stress repressive gene 2;Oryzabase Gene Symbol Synonym(s)=OsDSR2;Oryzabase Gene Name Synonym(s)=DUF966-stress repressive gene 2;Note=DUF966 family protein%2C Abiotic stress response;Transcript_evidence=AK068926;ORF_evidence=Q943L5;InterPro=Protein of unknown function DUF966 (IPR010369),Uncharacterised conserved protein UCP031043 (IPR021182);NIAS_FLcDNA=J013170N02;Manual Curation=January 16%2C 2017;Literature_PMID=24247850;Oryzabase=15439;Expression=AK068926;TENOR=Os01t0839200-01;KEGG=Os01t0839200-01
Chr01	irgsp1_rep	five_prime_UTR	36004962	36005000	.	-	.	Parent=Os01t0839200-01
Chr01	irgsp1_rep	CDS	36004730	36004961	.	-	0	Parent=Os01t0839200-01
Chr01	irgsp1_rep	CDS	36004543	36004612	.	-	2	Parent=Os01t0839200-01
Chr01	irgsp1_rep	CDS	36003650	36004438	.	-	1	Parent=Os01t0839200-01
Chr01	irgsp1_rep	CDS	36002684	36002828	.	-	1	Parent=Os01t0839200-01
Chr01	irgsp1_rep	three_prime_UTR	36002559	36002683	.	-	.	Parent=Os01t0839200-01
Chr01	irgsp1_rep	mRNA	36007402	36009895	.	+	.	ID=Os01t0839300-01;Name=Os01t0839300-01;Locus_id=Os01g0839300;Note=Similar to 50S ribosomal protein L17.;Transcript_evidence=AK064685 (DDBJ%2C Best hit);ORF_evidence=B6TSY1 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L17 (IPR000456);NIAS_FLcDNA=002-116-D07;Expression=AK064685;TENOR=Os01t0839300-01;KEGG=Os01t0839300-01
Chr01	irgsp1_rep	five_prime_UTR	36007402	36007481	.	+	.	Parent=Os01t0839300-01
Chr01	irgsp1_rep	CDS	36007482	36007537	.	+	0	Parent=Os01t0839300-01
Chr01	irgsp1_rep	CDS	36007626	36007680	.	+	1	Parent=Os01t0839300-01
Chr01	irgsp1_rep	CDS	36007777	36007827	.	+	0	Parent=Os01t0839300-01
Chr01	irgsp1_rep	CDS	36008703	36008794	.	+	0	Parent=Os01t0839300-01
Chr01	irgsp1_rep	CDS	36009042	36009119	.	+	1	Parent=Os01t0839300-01
Chr01	irgsp1_rep	CDS	36009519	36009672	.	+	1	Parent=Os01t0839300-01
Chr01	irgsp1_rep	three_prime_UTR	36009673	36009895	.	+	.	Parent=Os01t0839300-01
Chr01	irgsp1_rep	mRNA	36011627	36013033	.	+	.	ID=Os01t0839400-00;Name=Os01t0839400-00;Locus_id=Os01g0839400;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK369760 (DDBJ);ORF_evidence=NP_001044753.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os01t0839400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	36011627	36011649	.	+	.	Parent=Os01t0839400-00
Chr01	irgsp1_rep	CDS	36011650	36013020	.	+	0	Parent=Os01t0839400-00
Chr01	irgsp1_rep	three_prime_UTR	36013021	36013033	.	+	.	Parent=Os01t0839400-00
Chr01	irgsp1_rep	mRNA	36014027	36014684	.	-	.	ID=Os01t0839500-00;Name=Os01t0839500-00;Locus_id=Os01g0839500;Note=Histone-fold domain containing protein.;Transcript_evidence=CT837605 (DDBJ%2C Best hit);ORF_evidence=Q943L2 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H2B (IPR000558),Histone core (IPR007125),Histone-fold (IPR009072);TENOR=Os01t0839500-00;KEGG=Os01t0839500-00
Chr01	irgsp1_rep	five_prime_UTR	36014593	36014684	.	-	.	Parent=Os01t0839500-00
Chr01	irgsp1_rep	CDS	36014173	36014592	.	-	0	Parent=Os01t0839500-00
Chr01	irgsp1_rep	three_prime_UTR	36014027	36014172	.	-	.	Parent=Os01t0839500-00
Chr01	irgsp1_rep	mRNA	36017258	36023468	.	-	.	ID=Os01t0839700-01;Name=Os01t0839700-01;Locus_id=Os01g0839700;CGSNL Gene Symbol=UBC11;CGSNL Gene Name=UBIQUITIN-CONJUGATING ENZYME 11;Oryzabase Gene Symbol Synonym(s)=OsUBC11;Oryzabase Gene Name Synonym(s)=Ubiquitin-conjugating enzyme 11;Note=Similar to Ubiquitin carrier protein.;Transcript_evidence=AK112030 (DDBJ%2C Best hit);ORF_evidence=A2WWU3 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135),Ubiquitin-conjugating enzyme%2C active site (IPR023313);NIAS_FLcDNA=001-039-E11;Oryzabase=19558;TENOR=Os01t0839700-01
Chr01	irgsp1_rep	five_prime_UTR	36023228	36023468	.	-	.	Parent=Os01t0839700-01
Chr01	irgsp1_rep	CDS	36023176	36023227	.	-	0	Parent=Os01t0839700-01
Chr01	irgsp1_rep	CDS	36022954	36023056	.	-	2	Parent=Os01t0839700-01
Chr01	irgsp1_rep	CDS	36019247	36019344	.	-	1	Parent=Os01t0839700-01
Chr01	irgsp1_rep	CDS	36019062	36019162	.	-	2	Parent=Os01t0839700-01
Chr01	irgsp1_rep	CDS	36018182	36018259	.	-	0	Parent=Os01t0839700-01
Chr01	irgsp1_rep	CDS	36017665	36017742	.	-	0	Parent=Os01t0839700-01
Chr01	irgsp1_rep	three_prime_UTR	36017258	36017664	.	-	.	Parent=Os01t0839700-01
Chr01	irgsp1_rep	mRNA	36017205	36023380	.	-	.	ID=Os01t0839700-02;Name=Os01t0839700-02;Locus_id=Os01g0839700;CGSNL Gene Symbol=UBC11;CGSNL Gene Name=UBIQUITIN-CONJUGATING ENZYME 11;Oryzabase Gene Symbol Synonym(s)=OsUBC11;Oryzabase Gene Name Synonym(s)=Ubiquitin-conjugating enzyme 11;Note=Similar to Ubiquitin carrier protein.;Transcript_evidence=AK104148 (DDBJ%2C Best hit);ORF_evidence=A2WWU3 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135),Ubiquitin-conjugating enzyme%2C active site (IPR023313);NIAS_FLcDNA=006-208-B05;Oryzabase=19558;Expression=AK104148;TENOR=Os01t0839700-02;KEGG=Os01t0839700-02 (EC:6.3.2.19)
Chr01	irgsp1_rep	five_prime_UTR	36023228	36023380	.	-	.	Parent=Os01t0839700-02
Chr01	irgsp1_rep	CDS	36023176	36023227	.	-	0	Parent=Os01t0839700-02
Chr01	irgsp1_rep	CDS	36022954	36023056	.	-	2	Parent=Os01t0839700-02
Chr01	irgsp1_rep	CDS	36019247	36019344	.	-	1	Parent=Os01t0839700-02
Chr01	irgsp1_rep	CDS	36019062	36019162	.	-	2	Parent=Os01t0839700-02
Chr01	irgsp1_rep	CDS	36018182	36018259	.	-	0	Parent=Os01t0839700-02
Chr01	irgsp1_rep	CDS	36017665	36017742	.	-	0	Parent=Os01t0839700-02
Chr01	irgsp1_rep	three_prime_UTR	36017205	36017664	.	-	.	Parent=Os01t0839700-02
Chr01	irgsp1_rep	mRNA	36017260	36023422	.	-	.	ID=Os01t0839700-03;Name=Os01t0839700-03;Locus_id=Os01g0839700;CGSNL Gene Symbol=UBC11;CGSNL Gene Name=UBIQUITIN-CONJUGATING ENZYME 11;Oryzabase Gene Symbol Synonym(s)=OsUBC11;Oryzabase Gene Name Synonym(s)=Ubiquitin-conjugating enzyme 11;Note=Similar to Ubiquitin carrier protein.;Transcript_evidence=AK099038 (DDBJ%2C Best hit);ORF_evidence=A2WWU3 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135),Ubiquitin-conjugating enzyme%2C active site (IPR023313);NIAS_FLcDNA=J013135H01;Oryzabase=19558;TENOR=Os01t0839700-03
Chr01	irgsp1_rep	five_prime_UTR	36023228	36023422	.	-	.	Parent=Os01t0839700-03
Chr01	irgsp1_rep	CDS	36023176	36023227	.	-	0	Parent=Os01t0839700-03
Chr01	irgsp1_rep	CDS	36022954	36023056	.	-	2	Parent=Os01t0839700-03
Chr01	irgsp1_rep	CDS	36019247	36019344	.	-	1	Parent=Os01t0839700-03
Chr01	irgsp1_rep	CDS	36019062	36019162	.	-	2	Parent=Os01t0839700-03
Chr01	irgsp1_rep	CDS	36018182	36018259	.	-	0	Parent=Os01t0839700-03
Chr01	irgsp1_rep	CDS	36017665	36017742	.	-	0	Parent=Os01t0839700-03
Chr01	irgsp1_rep	three_prime_UTR	36017260	36017664	.	-	.	Parent=Os01t0839700-03
Chr01	irgsp1_rep	mRNA	36017370	36023296	.	+	.	ID=Os01t0839801-00;Name=Os01t0839801-00;Locus_id=Os01g0839801;Note=Hypothetical gene.;Transcript_evidence=BT019147 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0839801-00;KEGG=Os01t0839801-00
Chr01	irgsp1_rep	five_prime_UTR	36017370	36017632	.	+	.	Parent=Os01t0839801-00
Chr01	irgsp1_rep	CDS	36017633	36017742	.	+	0	Parent=Os01t0839801-00
Chr01	irgsp1_rep	CDS	36018182	36018257	.	+	1	Parent=Os01t0839801-00
Chr01	irgsp1_rep	CDS	36019060	36019101	.	+	0	Parent=Os01t0839801-00
Chr01	irgsp1_rep	three_prime_UTR	36019102	36019147	.	+	.	Parent=Os01t0839801-00
Chr01	irgsp1_rep	three_prime_UTR	36019227	36019331	.	+	.	Parent=Os01t0839801-00
Chr01	irgsp1_rep	three_prime_UTR	36022938	36023042	.	+	.	Parent=Os01t0839801-00
Chr01	irgsp1_rep	three_prime_UTR	36023160	36023296	.	+	.	Parent=Os01t0839801-00
Chr01	irgsp1_rep	mRNA	36029895	36030895	.	-	.	ID=Os01t0839900-01;Name=Os01t0839900-01;Locus_id=Os01g0839900;Oryzabase Gene Name Synonym(s)=osmotin;Note=Thaumatin%2C pathogenesis-related family protein.;Transcript_evidence=AK060655 (DDBJ%2C Best hit);ORF_evidence=D7S0L8 (UniProt);InterPro=Thaumatin%2C pathogenesis-related (IPR001938);NIAS_FLcDNA=001-028-A02;Oryzabase=23075;Expression=AK060655;TENOR=Os01t0839900-01;KEGG=Os01t0839900-01
Chr01	irgsp1_rep	five_prime_UTR	36030838	36030895	.	-	.	Parent=Os01t0839900-01
Chr01	irgsp1_rep	CDS	36030094	36030837	.	-	0	Parent=Os01t0839900-01
Chr01	irgsp1_rep	three_prime_UTR	36029895	36030093	.	-	.	Parent=Os01t0839900-01
Chr01	irgsp1_rep	mRNA	36039716	36043151	.	+	.	ID=Os01t0840100-01;Name=Os01t0840100-01;Locus_id=Os01g0840100;Oryzabase Gene Symbol Synonym(s)=OsMed37_1%2C Med37_1%2C OsHSP70;Oryzabase Gene Name Synonym(s)=heat-shock protein 70%2C heat-shock protein cognate 70%2C Mediator 37_1;Note=Heat shock protein Hsp70 family protein.;Transcript_evidence=AK243277 (DDBJ%2C Best hit);ORF_evidence=Q9SAU8 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Heat shock protein Hsp70 (IPR001023),Heat shock protein 70 (IPR013126),Heat shock protein 70%2C conserved site (IPR018181);NIAS_FLcDNA=J100050G20;Oryzabase=17626;TENOR=Os01t0840100-01;KEGG=Os01t0840100-01
Chr01	irgsp1_rep	five_prime_UTR	36039716	36039844	.	+	.	Parent=Os01t0840100-01
Chr01	irgsp1_rep	CDS	36039845	36040055	.	+	0	Parent=Os01t0840100-01
Chr01	irgsp1_rep	CDS	36041235	36042970	.	+	2	Parent=Os01t0840100-01
Chr01	irgsp1_rep	three_prime_UTR	36042971	36043151	.	+	.	Parent=Os01t0840100-01
Chr01	irgsp1_rep	mRNA	36044182	36046520	.	-	.	ID=Os01t0840200-01;Name=Os01t0840200-01;Locus_id=Os01g0840200;Note=HSP20-like chaperone domain containing protein.;Transcript_evidence=AK069954 (DDBJ%2C Best hit),AK103961 (DDBJ%2C Best hit);ORF_evidence=NP_001147780.1 (RefSeq);InterPro=HSP20-like chaperone (IPR008978);NIAS_FLcDNA=J023034F22,001-015-E06;Expression=AK069954;TENOR=Os01t0840200-01;KEGG=Os01t0840200-01
Chr01	irgsp1_rep	five_prime_UTR	36046048	36046520	.	-	.	Parent=Os01t0840200-01
Chr01	irgsp1_rep	CDS	36044482	36046047	.	-	0	Parent=Os01t0840200-01
Chr01	irgsp1_rep	three_prime_UTR	36044182	36044481	.	-	.	Parent=Os01t0840200-01
Chr01	irgsp1_rep	mRNA	36059256	36059450	.	-	.	ID=Os01t0840300-00;Name=Os01t0840300-00;Locus_id=Os01g0840300;CGSNL Gene Symbol=WOX5;CGSNL Gene Name=WUSCHEL-LIKE HOMEOBOX 5;Oryzabase Gene Symbol Synonym(s)=OsWOX2%2C Os WOX2%2C WOX2%2C OsWOX5%2C OsWOX2L%2C WOX2L;Oryzabase Gene Name Synonym(s)=WUSCHEL-related homeobox 5;Note=Similar to WUSCHEL-related homeobox 5.;Transcript_evidence=AM234749 (DDBJ%2C Best hit);ORF_evidence=Q8LR86 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);Oryzabase=12275;TENOR=Os01t0840300-00;KEGG=Os01t0840300-00
Chr01	irgsp1_rep	CDS	36059256	36059450	.	-	0	Parent=Os01t0840300-00
Chr01	irgsp1_rep	mRNA	36083073	36084198	.	-	.	ID=Os01t0840700-00;Name=Os01t0840700-00;Locus_id=Os01g0840700;CGSNL Gene Symbol=RPL36.2;CGSNL Gene Name=RIBOSOMAL PROTEIN L36.2;Oryzabase Gene Symbol Synonym(s)=OsRPL36.2;Oryzabase Gene Name Synonym(s)=ribosomal protein  L36.2%2C ribosomal protein large subunit 36.2;Note=Similar to 60S ribosomal protein L36.;Transcript_evidence=CT834844 (DDBJ%2C Best hit);ORF_evidence=A2WWV9 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L36e (IPR000509);Oryzabase=22205;TENOR=Os01t0840700-00;KEGG=Os01t0840700-00
Chr01	irgsp1_rep	CDS	36084104	36084198	.	-	0	Parent=Os01t0840700-00
Chr01	irgsp1_rep	CDS	36083265	36083295	.	-	1	Parent=Os01t0840700-00
Chr01	irgsp1_rep	three_prime_UTR	36083073	36083264	.	-	.	Parent=Os01t0840700-00
Chr01	irgsp1_rep	mRNA	36091051	36091822	.	-	.	ID=Os01t0840900-01;Name=Os01t0840900-01;Locus_id=Os01g0840900;Note=Conserved hypothetical protein.;Transcript_evidence=AK063699 (DDBJ%2C Best hit);ORF_evidence=B8BI09 (UniProt);NIAS_FLcDNA=001-119-G07;TENOR=Os01t0840900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	36091821	36091822	.	-	.	Parent=Os01t0840900-01
Chr01	irgsp1_rep	CDS	36091434	36091820	.	-	0	Parent=Os01t0840900-01
Chr01	irgsp1_rep	three_prime_UTR	36091051	36091433	.	-	.	Parent=Os01t0840900-01
Chr01	irgsp1_rep	mRNA	36094898	36096499	.	+	.	ID=Os01t0841000-01;Name=Os01t0841000-01;Locus_id=Os01g0841000;Note=ENTH/VHS domain containing protein.;Transcript_evidence=AK103342 (DDBJ%2C Best hit);ORF_evidence=NP_190238.1 (RefSeq);InterPro=Epsin domain%2C N-terminal (IPR001026),ENTH/VHS (IPR008942),Epsin-like%2C N-terminal (IPR013809);NIAS_FLcDNA=J033126C16;Expression=AK103342;TENOR=Os01t0841000-01;KEGG=Os01t0841000-01
Chr01	irgsp1_rep	five_prime_UTR	36094898	36095207	.	+	.	Parent=Os01t0841000-01
Chr01	irgsp1_rep	CDS	36095208	36095323	.	+	0	Parent=Os01t0841000-01
Chr01	irgsp1_rep	CDS	36095438	36095560	.	+	1	Parent=Os01t0841000-01
Chr01	irgsp1_rep	CDS	36095679	36095840	.	+	1	Parent=Os01t0841000-01
Chr01	irgsp1_rep	CDS	36095943	36096348	.	+	1	Parent=Os01t0841000-01
Chr01	irgsp1_rep	three_prime_UTR	36096349	36096499	.	+	.	Parent=Os01t0841000-01
Chr01	irgsp1_rep	mRNA	36094949	36096559	.	+	.	ID=Os01t0841000-02;Name=Os01t0841000-02;Locus_id=Os01g0841000;Note=ENTH/VHS domain containing protein.;Transcript_evidence=AK059601 (DDBJ%2C Best hit);ORF_evidence=NP_190238.1 (RefSeq);InterPro=Epsin domain%2C N-terminal (IPR001026),ENTH/VHS (IPR008942),Epsin-like%2C N-terminal (IPR013809);NIAS_FLcDNA=001-030-E07;Expression=AK059601;TENOR=Os01t0841000-02;KEGG=Os01t0841000-02
Chr01	irgsp1_rep	five_prime_UTR	36094949	36095207	.	+	.	Parent=Os01t0841000-02
Chr01	irgsp1_rep	CDS	36095208	36095323	.	+	0	Parent=Os01t0841000-02
Chr01	irgsp1_rep	CDS	36095438	36095560	.	+	1	Parent=Os01t0841000-02
Chr01	irgsp1_rep	CDS	36095679	36095840	.	+	1	Parent=Os01t0841000-02
Chr01	irgsp1_rep	CDS	36095943	36096348	.	+	1	Parent=Os01t0841000-02
Chr01	irgsp1_rep	three_prime_UTR	36096349	36096559	.	+	.	Parent=Os01t0841000-02
Chr01	irgsp1_rep	mRNA	36098412	36100864	.	+	.	ID=Os01t0841050-01;Name=Os01t0841050-01;Locus_id=Os01g0841050;Note=Conserved hypothetical protein.;Transcript_evidence=AK242632 (DDBJ%2C Best hit);ORF_evidence=NP_001172643.1 (RefSeq);NIAS_FLcDNA=J090022M05;TENOR=Os01t0841050-01;KEGG=Os01t0841050-01
Chr01	irgsp1_rep	five_prime_UTR	36098412	36099426	.	+	.	Parent=Os01t0841050-01
Chr01	irgsp1_rep	CDS	36099427	36099705	.	+	0	Parent=Os01t0841050-01
Chr01	irgsp1_rep	three_prime_UTR	36099706	36100864	.	+	.	Parent=Os01t0841050-01
Chr01	irgsp1_rep	mRNA	36102687	36104273	.	-	.	ID=Os01t0841100-01;Name=Os01t0841100-01;Locus_id=Os01g0841100;CGSNL Gene Symbol=FLA12;CGSNL Gene Name=FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 12;Oryzabase Gene Symbol Synonym(s)=OsFLA12;Oryzabase Gene Name Synonym(s)=fasciclin-like AGP 12%2C fasciclin-like arabinogalactan protein 12;Note=FAS1 domain domain containing protein.;Transcript_evidence=AK121828 (DDBJ%2C Best hit),AK119375 (DDBJ%2C Best hit);ORF_evidence=Q06I84 (UniProt);InterPro=FAS1 domain (IPR000782);NIAS_FLcDNA=J033099G20,001-132-A06;Oryzabase=11347;Expression=AK121828;TENOR=Os01t0841100-01;KEGG=Os01t0841100-01
Chr01	irgsp1_rep	five_prime_UTR	36104209	36104273	.	-	.	Parent=Os01t0841100-01
Chr01	irgsp1_rep	CDS	36102925	36104208	.	-	0	Parent=Os01t0841100-01
Chr01	irgsp1_rep	three_prime_UTR	36102687	36102924	.	-	.	Parent=Os01t0841100-01
Chr01	irgsp1_rep	mRNA	36105408	36108015	.	-	.	ID=Os01t0841200-01;Name=Os01t0841200-01;Locus_id=Os01g0841200;Note=Protein of unknown function DUF246%2C plant family protein.;Transcript_evidence=AK060210 (DDBJ%2C Best hit);ORF_evidence=B8AC09 (UniProt);InterPro=GDP-fucose protein O-fucosyltransferase (IPR019378),O-fucosyltransferase%2C plant (IPR024709);NIAS_FLcDNA=001-002-B05;Expression=AK060210;TENOR=Os01t0841200-01;KEGG=Os01t0841200-01
Chr01	irgsp1_rep	five_prime_UTR	36108015	36108015	.	-	.	Parent=Os01t0841200-01
Chr01	irgsp1_rep	CDS	36107962	36108014	.	-	0	Parent=Os01t0841200-01
Chr01	irgsp1_rep	CDS	36107424	36107621	.	-	1	Parent=Os01t0841200-01
Chr01	irgsp1_rep	CDS	36107087	36107291	.	-	1	Parent=Os01t0841200-01
Chr01	irgsp1_rep	CDS	36106777	36106944	.	-	0	Parent=Os01t0841200-01
Chr01	irgsp1_rep	CDS	36106501	36106668	.	-	0	Parent=Os01t0841200-01
Chr01	irgsp1_rep	CDS	36106237	36106427	.	-	0	Parent=Os01t0841200-01
Chr01	irgsp1_rep	CDS	36105939	36106101	.	-	1	Parent=Os01t0841200-01
Chr01	irgsp1_rep	three_prime_UTR	36105408	36105938	.	-	.	Parent=Os01t0841200-01
Chr01	irgsp1_rep	mRNA	36117133	36118473	.	+	.	ID=Os01t0841400-01;Name=Os01t0841400-01;Locus_id=Os01g0841400;Note=Conserved hypothetical protein.;Transcript_evidence=AK108501 (DDBJ%2C Best hit);ORF_evidence=B8AX70 (UniProt);NIAS_FLcDNA=002-143-H04;TENOR=Os01t0841400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	36117133	36118168	.	+	.	Parent=Os01t0841400-01
Chr01	irgsp1_rep	CDS	36118169	36118387	.	+	0	Parent=Os01t0841400-01
Chr01	irgsp1_rep	three_prime_UTR	36118388	36118473	.	+	.	Parent=Os01t0841400-01
Chr01	irgsp1_rep	mRNA	36120000	36120777	.	-	.	ID=Os01t0841450-00;Name=Os01t0841450-00;Locus_id=Os01g0841450;Note=Hypothetical conserved gene.;Transcript_evidence=AK100318 (DDBJ%2C Secondary hit);ORF_evidence=Q5N9U2 (UniProt);Expression=AK100318;TENOR=Os01t0841450-00;KEGG=Os01t0841450-00
Chr01	irgsp1_rep	five_prime_UTR	36120623	36120777	.	-	.	Parent=Os01t0841450-00
Chr01	irgsp1_rep	CDS	36120428	36120622	.	-	0	Parent=Os01t0841450-00
Chr01	irgsp1_rep	three_prime_UTR	36120416	36120427	.	-	.	Parent=Os01t0841450-00
Chr01	irgsp1_rep	three_prime_UTR	36120000	36120301	.	-	.	Parent=Os01t0841450-00
Chr01	irgsp1_rep	mRNA	36122786	36128441	.	+	.	ID=Os01t0841500-01;Name=Os01t0841500-01;Locus_id=Os01g0841500;RAP-DB Gene Symbol Synonym(s)=OsMYB3R-2%2C OsMYB3R2%2C MYB3R2;RAP-DB Gene Name Synonym(s)=O. sativa R1R2R3 MYB-2%2C R1R2R3 MYB-2;Oryzabase Gene Symbol Synonym(s)=OsMYB3R-2%2C OsMYB3R2%2C MYB3R2%2C OsMSL07%2C MSL07%2C MSL7%2C DLN28%2C OsDLN28;Oryzabase Gene Name Synonym(s)=O. sativa R1R2R3 MYB-2%2C R1R2R3 MYB-2%2C Myb/SANT-LIKE 7%2C DLN repressor 28%2C DLN motif protein 28;Note=R1R2R3 MYB transcription factor%2C Stress tolerance;Transcript_evidence=AK066520 (Genbank);ORF_evidence=Q0JHU7 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT/Myb domain (IPR001005),Homeodomain-like (IPR009057),Myb transcription factor (IPR015495),Myb domain%2C DNA-binding (IPR017930);NIAS_FLcDNA=J013069B18;Manual Curation=June 2%2C 2009;Literature_PMID=17293435,19279197;Oryzabase=9971;Expression=AK066520;TENOR=Os01t0841500-01;KEGG=Os01t0841500-01
Chr01	irgsp1_rep	five_prime_UTR	36122786	36123076	.	+	.	Parent=Os01t0841500-01
Chr01	irgsp1_rep	five_prime_UTR	36123197	36123242	.	+	.	Parent=Os01t0841500-01
Chr01	irgsp1_rep	CDS	36123243	36123412	.	+	0	Parent=Os01t0841500-01
Chr01	irgsp1_rep	CDS	36124523	36124574	.	+	1	Parent=Os01t0841500-01
Chr01	irgsp1_rep	CDS	36124929	36124986	.	+	0	Parent=Os01t0841500-01
Chr01	irgsp1_rep	CDS	36125392	36125486	.	+	2	Parent=Os01t0841500-01
Chr01	irgsp1_rep	CDS	36125572	36125675	.	+	0	Parent=Os01t0841500-01
Chr01	irgsp1_rep	CDS	36126228	36126356	.	+	1	Parent=Os01t0841500-01
Chr01	irgsp1_rep	CDS	36126640	36127795	.	+	1	Parent=Os01t0841500-01
Chr01	irgsp1_rep	three_prime_UTR	36127796	36127810	.	+	.	Parent=Os01t0841500-01
Chr01	irgsp1_rep	three_prime_UTR	36127989	36128441	.	+	.	Parent=Os01t0841500-01
Chr01	irgsp1_rep	mRNA	36129470	36132564	.	+	.	ID=Os01t0841600-01;Name=Os01t0841600-01;Locus_id=Os01g0841600;RAP-DB Gene Symbol Synonym(s)=OscTPI;RAP-DB Gene Name Synonym(s)=triose phosphate isomerase%2C stress and methylglyoxal inducible triose phosphate isomerase;Oryzabase Gene Symbol Synonym(s)=OscTPI;Oryzabase Gene Name Synonym(s)=triose phosphate isomerase%2C stress and methylglyoxal inducible triose phosphate isomerase;Note=Triose phosphate isomerase (EC 5.3.1.1)%2C Abiotic stress response%2C Response to methylglyoxal (cytotoxin);Transcript_evidence=AK100708,AK059805,AK099310,AK104017,AK104461;ORF_evidence=Q8LR75;GO=Biological Process: glycolytic process (GO:0006096),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: triose-phosphate isomerase activity (GO:0004807);InterPro=Triosephosphate isomerase (IPR000652),Triosephosphate isomerase%2C bacterial/eukaryotic (IPR022896),Aldolase-type TIM barrel (IPR013785),Triosephosphate isomerase%2C active site (IPR020861);NIAS_FLcDNA=J023115C24, 006-204-G07, J023143L20, 001-007-G07, 006-301-B11;Manual Curation=March 9%2C 2017;Literature_PMID=22902706;Oryzabase=11576;TENOR=Os01t0841600-01;Subcellular location=cytosol (GO:0005829)
Chr01	irgsp1_rep	five_prime_UTR	36129470	36129537	.	+	.	Parent=Os01t0841600-01
Chr01	irgsp1_rep	CDS	36129538	36129579	.	+	0	Parent=Os01t0841600-01
Chr01	irgsp1_rep	CDS	36129699	36129774	.	+	0	Parent=Os01t0841600-01
Chr01	irgsp1_rep	CDS	36129886	36130009	.	+	2	Parent=Os01t0841600-01
Chr01	irgsp1_rep	CDS	36130416	36130500	.	+	1	Parent=Os01t0841600-01
Chr01	irgsp1_rep	CDS	36130817	36130949	.	+	0	Parent=Os01t0841600-01
Chr01	irgsp1_rep	CDS	36131453	36131547	.	+	2	Parent=Os01t0841600-01
Chr01	irgsp1_rep	CDS	36131723	36131801	.	+	0	Parent=Os01t0841600-01
Chr01	irgsp1_rep	CDS	36131946	36132028	.	+	2	Parent=Os01t0841600-01
Chr01	irgsp1_rep	CDS	36132246	36132296	.	+	0	Parent=Os01t0841600-01
Chr01	irgsp1_rep	three_prime_UTR	36132297	36132564	.	+	.	Parent=Os01t0841600-01
Chr01	irgsp1_rep	mRNA	36129885	36132028	.	-	.	ID=Os01t0841650-00;Name=Os01t0841650-00;Locus_id=Os01g0841650;Note=Hypothetical protein.;Transcript_evidence=BT016352 (DDBJ);ORF_evidence=GeneMark;TENOR=Os01t0841650-00
Chr01	irgsp1_rep	five_prime_UTR	36131887	36132028	.	-	.	Parent=Os01t0841650-00
Chr01	irgsp1_rep	five_prime_UTR	36131489	36131553	.	-	.	Parent=Os01t0841650-00
Chr01	irgsp1_rep	CDS	36131437	36131488	.	-	0	Parent=Os01t0841650-00
Chr01	irgsp1_rep	CDS	36130829	36130934	.	-	2	Parent=Os01t0841650-00
Chr01	irgsp1_rep	CDS	36130435	36130511	.	-	1	Parent=Os01t0841650-00
Chr01	irgsp1_rep	CDS	36129885	36130026	.	-	2	Parent=Os01t0841650-00
Chr01	irgsp1_rep	mRNA	36135911	36137281	.	+	.	ID=Os01t0841700-01;Name=Os01t0841700-01;Locus_id=Os01g0841700;CGSNL Gene Symbol=RPP17;CGSNL Gene Name=PHLOEM PROTEIN 17;Oryzabase Gene Symbol Synonym(s)=Rpp17%2C FIERG1%2C OsERG1%2C OsERG1a%2C OsERG1b;Oryzabase Gene Name Synonym(s)=Elicitor-responsive protein 1%2C Fungal elicitor immediate early-responsive gene 1 protein%2C 17 kDa phloem protein;Note=Similar to Isoform ERG1b of Elicitor-responsive protein 1.;Transcript_evidence=AK243099 (DDBJ%2C Best hit);ORF_evidence=Q0JHU5-2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=J100024I19;Oryzabase=2207;TENOR=Os01t0841700-01;KEGG=Os01t0841700-01
Chr01	irgsp1_rep	five_prime_UTR	36135911	36135947	.	+	.	Parent=Os01t0841700-01
Chr01	irgsp1_rep	CDS	36135948	36136017	.	+	0	Parent=Os01t0841700-01
Chr01	irgsp1_rep	CDS	36136117	36136182	.	+	2	Parent=Os01t0841700-01
Chr01	irgsp1_rep	CDS	36136301	36136439	.	+	2	Parent=Os01t0841700-01
Chr01	irgsp1_rep	CDS	36136737	36136878	.	+	1	Parent=Os01t0841700-01
Chr01	irgsp1_rep	CDS	36137003	36137056	.	+	0	Parent=Os01t0841700-01
Chr01	irgsp1_rep	three_prime_UTR	36137057	36137281	.	+	.	Parent=Os01t0841700-01
Chr01	irgsp1_rep	mRNA	36141663	36146280	.	-	.	ID=Os01t0841800-01;Name=Os01t0841800-01;Locus_id=Os01g0841800;Note=Ribonuclease II and R domain containing protein.;Transcript_evidence=AK111196 (DDBJ%2C Best hit);ORF_evidence=XP_002870965.1 (RefSeq);GO=Molecular Function: RNA binding (GO:0003723),Molecular Function: ribonuclease activity (GO:0004540);InterPro=Ribonuclease II/R (IPR001900),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=002-178-D08;Expression=AK111196;TENOR=Os01t0841800-01;KEGG=Os01t0841800-01
Chr01	irgsp1_rep	five_prime_UTR	36146198	36146280	.	-	.	Parent=Os01t0841800-01
Chr01	irgsp1_rep	CDS	36145965	36146197	.	-	0	Parent=Os01t0841800-01
Chr01	irgsp1_rep	CDS	36144812	36144971	.	-	1	Parent=Os01t0841800-01
Chr01	irgsp1_rep	CDS	36144557	36144670	.	-	0	Parent=Os01t0841800-01
Chr01	irgsp1_rep	CDS	36144406	36144483	.	-	0	Parent=Os01t0841800-01
Chr01	irgsp1_rep	CDS	36144196	36144324	.	-	0	Parent=Os01t0841800-01
Chr01	irgsp1_rep	CDS	36143519	36143737	.	-	0	Parent=Os01t0841800-01
Chr01	irgsp1_rep	CDS	36143095	36143277	.	-	0	Parent=Os01t0841800-01
Chr01	irgsp1_rep	CDS	36142773	36142835	.	-	0	Parent=Os01t0841800-01
Chr01	irgsp1_rep	CDS	36142559	36142665	.	-	0	Parent=Os01t0841800-01
Chr01	irgsp1_rep	CDS	36142332	36142481	.	-	1	Parent=Os01t0841800-01
Chr01	irgsp1_rep	CDS	36142093	36142252	.	-	1	Parent=Os01t0841800-01
Chr01	irgsp1_rep	CDS	36141915	36141965	.	-	0	Parent=Os01t0841800-01
Chr01	irgsp1_rep	three_prime_UTR	36141663	36141914	.	-	.	Parent=Os01t0841800-01
Chr01	irgsp1_rep	mRNA	36158308	36161507	.	+	.	ID=Os01t0842200-01;Name=Os01t0842200-01;Locus_id=Os01g0842200;CGSNL Gene Symbol=GRAS2;CGSNL Gene Name=GRAS PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsGRAS-2%2C OsGRAS2%2C GRAS-2;Oryzabase Gene Name Synonym(s)=GRAS protein 2;Note=Similar to Scarecrow-like 9 (Fragment).;Transcript_evidence=AK119896 (DDBJ%2C Best hit);ORF_evidence=B6U6Z6 (UniProt);InterPro=Transcription factor GRAS (IPR005202);NIAS_FLcDNA=002-180-C06;Oryzabase=22779;Expression=AK119896;TENOR=Os01t0842200-01;KEGG=Os01t0842200-01
Chr01	irgsp1_rep	five_prime_UTR	36158308	36158408	.	+	.	Parent=Os01t0842200-01
Chr01	irgsp1_rep	five_prime_UTR	36158574	36158647	.	+	.	Parent=Os01t0842200-01
Chr01	irgsp1_rep	CDS	36158648	36161110	.	+	0	Parent=Os01t0842200-01
Chr01	irgsp1_rep	three_prime_UTR	36161111	36161507	.	+	.	Parent=Os01t0842200-01
Chr01	irgsp1_rep	mRNA	36158660	36161321	.	+	.	ID=Os01t0842200-02;Name=Os01t0842200-02;Locus_id=Os01g0842200;CGSNL Gene Symbol=GRAS2;CGSNL Gene Name=GRAS PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsGRAS-2%2C OsGRAS2%2C GRAS-2;Oryzabase Gene Name Synonym(s)=GRAS protein 2;Note=Similar to SCARECROW-like protein.;Transcript_evidence=AK102593 (DDBJ%2C Best hit);ORF_evidence=B6U6Z6 (UniProt);InterPro=Transcription factor GRAS (IPR005202);NIAS_FLcDNA=J033098G15;Oryzabase=22779;TENOR=Os01t0842200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	36158660	36158683	.	+	.	Parent=Os01t0842200-02
Chr01	irgsp1_rep	CDS	36158684	36161110	.	+	0	Parent=Os01t0842200-02
Chr01	irgsp1_rep	three_prime_UTR	36161111	36161321	.	+	.	Parent=Os01t0842200-02
Chr01	irgsp1_rep	mRNA	36165932	36168939	.	-	.	ID=Os01t0842400-01;Name=Os01t0842400-01;Locus_id=Os01g0842400;CGSNL Gene Symbol=LAC4;CGSNL Gene Name=LACCASE 4;Oryzabase Gene Symbol Synonym(s)=Oslacc%2C lacc%2C OsLAC4%2C OsLAC17%2C LAC17;Oryzabase Gene Name Synonym(s)=lactase%2C laccase 4;Note=Similar to Laccase (EC 1.10.3.2).;Transcript_evidence=AK068901 (DDBJ%2C Best hit);ORF_evidence=Q5N9X2 (UniProt);GO=Biological Process: lignin catabolic process (GO:0046274),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: apoplast (GO:0048046),Molecular Function: copper ion binding (GO:0005507),Molecular Function: laccase activity (GO:0008471),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Multicopper oxidase%2C type 1 (IPR001117),Multicopper oxidase%2C copper-binding site (IPR002355),Cupredoxin (IPR008972),Multicopper oxidase%2C type 2 (IPR011706),Multicopper oxidase%2C type 3 (IPR011707),Laccase (IPR017761);NIAS_FLcDNA=J013170B10;Oryzabase=14484;Expression=AK068901;TENOR=Os01t0842400-01;KEGG=Os01t0842400-01 (EC:1.10.3.2)
Chr01	irgsp1_rep	five_prime_UTR	36168831	36168939	.	-	.	Parent=Os01t0842400-01
Chr01	irgsp1_rep	CDS	36168723	36168830	.	-	0	Parent=Os01t0842400-01
Chr01	irgsp1_rep	CDS	36168471	36168622	.	-	0	Parent=Os01t0842400-01
Chr01	irgsp1_rep	CDS	36168144	36168388	.	-	1	Parent=Os01t0842400-01
Chr01	irgsp1_rep	CDS	36167858	36167986	.	-	2	Parent=Os01t0842400-01
Chr01	irgsp1_rep	CDS	36166383	36167357	.	-	2	Parent=Os01t0842400-01
Chr01	irgsp1_rep	CDS	36166147	36166277	.	-	2	Parent=Os01t0842400-01
Chr01	irgsp1_rep	three_prime_UTR	36165932	36166146	.	-	.	Parent=Os01t0842400-01
Chr01	irgsp1_rep	mRNA	36165929	36166677	.	-	.	ID=Os01t0842400-02;Name=Os01t0842400-02;Locus_id=Os01g0842400;CGSNL Gene Symbol=LAC4;CGSNL Gene Name=LACCASE 4;Oryzabase Gene Symbol Synonym(s)=Oslacc%2C lacc%2C OsLAC4%2C OsLAC17%2C LAC17;Oryzabase Gene Name Synonym(s)=lactase%2C laccase 4;Note=Similar to cDNA clone:J013170B10%2C full insert sequence.;Transcript_evidence=AK059101 (DDBJ%2C Best hit);ORF_evidence=B7EFK2 (UniProt);GO=Biological Process: lignin catabolic process (GO:0046274),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: apoplast (GO:0048046),Molecular Function: copper ion binding (GO:0005507),Molecular Function: laccase activity (GO:0008471),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Multicopper oxidase%2C copper-binding site (IPR002355),Cupredoxin (IPR008972),Multicopper oxidase%2C type 2 (IPR011706),Laccase (IPR017761);NIAS_FLcDNA=001-022-D01;Oryzabase=14484;Expression=AK059101;TENOR=Os01t0842400-02;KEGG=Os01t0842400-02
Chr01	irgsp1_rep	CDS	36166383	36166677	.	-	0	Parent=Os01t0842400-02
Chr01	irgsp1_rep	CDS	36166147	36166277	.	-	2	Parent=Os01t0842400-02
Chr01	irgsp1_rep	three_prime_UTR	36165929	36166146	.	-	.	Parent=Os01t0842400-02
Chr01	irgsp1_rep	mRNA	36177292	36180127	.	-	.	ID=Os01t0842500-01;Name=Os01t0842500-01;Locus_id=Os01g0842500;CGSNL Gene Symbol=LAC5;CGSNL Gene Name=LACCASE 5;Oryzabase Gene Symbol Synonym(s)=OsLAC5;Oryzabase Gene Name Synonym(s)=laccase 5;Note=Similar to Laccase (EC 1.10.3.2).;Transcript_evidence=AK066513 (DDBJ%2C Best hit);ORF_evidence=NP_001147942.1 (RefSeq);GO=Biological Process: lignin catabolic process (GO:0046274),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: apoplast (GO:0048046),Molecular Function: copper ion binding (GO:0005507),Molecular Function: laccase activity (GO:0008471),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Multicopper oxidase%2C type 1 (IPR001117),Multicopper oxidase%2C copper-binding site (IPR002355),Cupredoxin (IPR008972),Multicopper oxidase%2C type 2 (IPR011706),Multicopper oxidase%2C type 3 (IPR011707),Laccase (IPR017761);NIAS_FLcDNA=J013068J22;Oryzabase=18566;Expression=AK066513;TENOR=Os01t0842500-01;KEGG=Os01t0842500-01 (EC:1.10.3.2)
Chr01	irgsp1_rep	five_prime_UTR	36180048	36180127	.	-	.	Parent=Os01t0842500-01
Chr01	irgsp1_rep	CDS	36179943	36180047	.	-	0	Parent=Os01t0842500-01
Chr01	irgsp1_rep	CDS	36179645	36179796	.	-	0	Parent=Os01t0842500-01
Chr01	irgsp1_rep	CDS	36179276	36179520	.	-	1	Parent=Os01t0842500-01
Chr01	irgsp1_rep	CDS	36179026	36179154	.	-	2	Parent=Os01t0842500-01
Chr01	irgsp1_rep	CDS	36177968	36178939	.	-	2	Parent=Os01t0842500-01
Chr01	irgsp1_rep	CDS	36177688	36177818	.	-	2	Parent=Os01t0842500-01
Chr01	irgsp1_rep	three_prime_UTR	36177292	36177687	.	-	.	Parent=Os01t0842500-01
Chr01	irgsp1_rep	mRNA	36182463	36187878	.	-	.	ID=Os01t0842600-01;Name=Os01t0842600-01;Locus_id=Os01g0842600;CGSNL Gene Symbol=FTSH3;Oryzabase Gene Symbol Synonym(s)=OsFtsH3%2C FtsH3;Note=Similar to AAA-metalloprotease FtsH.;Transcript_evidence=AK100245 (DDBJ%2C Best hit);ORF_evidence=Q8S2A7 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: protein catabolic process (GO:0030163),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: ATP binding (GO:0005524),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=Peptidase M41 (IPR000642),ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960),Peptidase M41%2C FtsH (IPR005936),Peptidase M41%2C FtsH extracellular (IPR011546);NIAS_FLcDNA=J023056H19;Oryzabase=21256;Expression=AK100245;TENOR=Os01t0842600-01;KEGG=Os01t0842600-01
Chr01	irgsp1_rep	five_prime_UTR	36187809	36187878	.	-	.	Parent=Os01t0842600-01
Chr01	irgsp1_rep	CDS	36187746	36187808	.	-	0	Parent=Os01t0842600-01
Chr01	irgsp1_rep	CDS	36187429	36187633	.	-	0	Parent=Os01t0842600-01
Chr01	irgsp1_rep	CDS	36187280	36187348	.	-	2	Parent=Os01t0842600-01
Chr01	irgsp1_rep	CDS	36186624	36186751	.	-	2	Parent=Os01t0842600-01
Chr01	irgsp1_rep	CDS	36184991	36185473	.	-	0	Parent=Os01t0842600-01
Chr01	irgsp1_rep	CDS	36184054	36184821	.	-	0	Parent=Os01t0842600-01
Chr01	irgsp1_rep	CDS	36183288	36183515	.	-	0	Parent=Os01t0842600-01
Chr01	irgsp1_rep	CDS	36182749	36183213	.	-	0	Parent=Os01t0842600-01
Chr01	irgsp1_rep	three_prime_UTR	36182463	36182748	.	-	.	Parent=Os01t0842600-01
Chr01	irgsp1_rep	mRNA	36193840	36194611	.	-	.	ID=Os01t0842801-00;Name=Os01t0842801-00;Locus_id=Os01g0842801;CGSNL Gene Symbol=WRKY56;CGSNL Gene Name=WRKY GENE 56;Oryzabase Gene Symbol Synonym(s)=OsWRKY56;Oryzabase Gene Name Synonym(s)=Rice WRKY gene56;Note=Similar to WRKY transcription factor 56.;Transcript_evidence=CT835509 (DDBJ%2C Best hit);ORF_evidence=Q6IEM5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6570;TENOR=Os01t0842801-00;KEGG=Os01t0842801-00
Chr01	irgsp1_rep	five_prime_UTR	36194574	36194611	.	-	.	Parent=Os01t0842801-00
Chr01	irgsp1_rep	CDS	36194146	36194573	.	-	0	Parent=Os01t0842801-00
Chr01	irgsp1_rep	CDS	36193887	36194046	.	-	1	Parent=Os01t0842801-00
Chr01	irgsp1_rep	three_prime_UTR	36193840	36193886	.	-	.	Parent=Os01t0842801-00
Chr01	irgsp1_rep	mRNA	36222348	36228582	.	+	.	ID=Os01t0843300-00;Name=Os01t0843300-00;Locus_id=Os01g0843300;Note=Similar to Mitochondrial Rho GTPase.;Transcript_evidence=ab initio prediction;ORF_evidence=B8AC22 (UniProt);GO=Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Biological Process: cellular homeostasis (GO:0019725),Cellular Component: intracellular (GO:0005622),Cellular Component: mitochondrial outer membrane (GO:0005741),Molecular Function: GTPase activity (GO:0003924),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Rab type (IPR003579),EF hand associated%2C type-1 (IPR013566),EF hand associated%2C type-2 (IPR013567),Mitochondrial Rho-like (IPR013684),Small GTPase superfamily%2C mitochondrial rho type (IPR021181);TENOR=Os01t0843300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	36222348	36222586	.	+	0	Parent=Os01t0843300-00
Chr01	irgsp1_rep	CDS	36222652	36222784	.	+	1	Parent=Os01t0843300-00
Chr01	irgsp1_rep	CDS	36222876	36223022	.	+	0	Parent=Os01t0843300-00
Chr01	irgsp1_rep	CDS	36223913	36224089	.	+	0	Parent=Os01t0843300-00
Chr01	irgsp1_rep	CDS	36224210	36224458	.	+	0	Parent=Os01t0843300-00
Chr01	irgsp1_rep	CDS	36225105	36225160	.	+	0	Parent=Os01t0843300-00
Chr01	irgsp1_rep	CDS	36225380	36225461	.	+	1	Parent=Os01t0843300-00
Chr01	irgsp1_rep	CDS	36226001	36226149	.	+	0	Parent=Os01t0843300-00
Chr01	irgsp1_rep	CDS	36226304	36226370	.	+	1	Parent=Os01t0843300-00
Chr01	irgsp1_rep	CDS	36226659	36226771	.	+	0	Parent=Os01t0843300-00
Chr01	irgsp1_rep	CDS	36227579	36227729	.	+	1	Parent=Os01t0843300-00
Chr01	irgsp1_rep	CDS	36228093	36228279	.	+	0	Parent=Os01t0843300-00
Chr01	irgsp1_rep	CDS	36228509	36228582	.	+	2	Parent=Os01t0843300-00
Chr01	irgsp1_rep	mRNA	36222372	36222546	.	-	.	ID=Os01t0843366-00;Name=Os01t0843366-00;Locus_id=Os01g0843366;Note=Non-protein coding transcript.;Transcript_evidence=BT085299 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0843366-00
Chr01	irgsp1_rep	exon	36222372	36222546	.	-	.	Parent=Os01t0843366-00
Chr01	irgsp1_rep	mRNA	36230259	36231480	.	+	.	ID=Os01t0843432-00;Name=Os01t0843432-00;Locus_id=Os01g0843432;Note=Conserved hypothetical protein.;Transcript_evidence=BT018721 (DDBJ);ORF_evidence=NP_001042193.1 (RefSeq);TENOR=Os01t0843432-00
Chr01	irgsp1_rep	CDS	36230259	36230828	.	+	0	Parent=Os01t0843432-00
Chr01	irgsp1_rep	CDS	36231307	36231345	.	+	0	Parent=Os01t0843432-00
Chr01	irgsp1_rep	three_prime_UTR	36231346	36231480	.	+	.	Parent=Os01t0843432-00
Chr01	irgsp1_rep	mRNA	36230953	36231939	.	-	.	ID=Os01t0843500-01;Name=Os01t0843500-01;Locus_id=Os01g0843500;Note=Hypothetical conserved gene.;Transcript_evidence=AK242775 (DDBJ%2C Best hit);ORF_evidence=NP_001172645.1 (RefSeq);NIAS_FLcDNA=J090054H01;TENOR=Os01t0843500-01;KEGG=Os01t0843500-01
Chr01	irgsp1_rep	five_prime_UTR	36231583	36231939	.	-	.	Parent=Os01t0843500-01
Chr01	irgsp1_rep	CDS	36231259	36231582	.	-	0	Parent=Os01t0843500-01
Chr01	irgsp1_rep	three_prime_UTR	36230953	36231258	.	-	.	Parent=Os01t0843500-01
Chr01	irgsp1_rep	mRNA	36232930	36233540	.	+	.	ID=Os01t0843700-01;Name=Os01t0843700-01;Locus_id=Os01g0843700;Oryzabase Gene Name Synonym(s)=Conserved hypothetical protein;Note=Conserved hypothetical protein.;Transcript_evidence=AK241790 (DDBJ%2C Best hit);ORF_evidence=Q5N9W5 (UniProt);NIAS_FLcDNA=J065207M23;Oryzabase=23373;TENOR=Os01t0843700-01;KEGG=Os01t0843700-01
Chr01	irgsp1_rep	five_prime_UTR	36232930	36233002	.	+	.	Parent=Os01t0843700-01
Chr01	irgsp1_rep	CDS	36233003	36233284	.	+	0	Parent=Os01t0843700-01
Chr01	irgsp1_rep	three_prime_UTR	36233285	36233540	.	+	.	Parent=Os01t0843700-01
Chr01	irgsp1_rep	mRNA	36236705	36239144	.	+	.	ID=Os01t0843800-00;Name=Os01t0843800-00;Locus_id=Os01g0843800;CGSNL Gene Symbol=LAC6;CGSNL Gene Name=LACCASE 6;Oryzabase Gene Symbol Synonym(s)=OsLAC6;Oryzabase Gene Name Synonym(s)=laccase 6;Note=Similar to L-ascorbate oxidase.;Transcript_evidence=tplb0054i02 (Wheat FLcDNA);ORF_evidence=B6UCC4 (UniProt);GO=Biological Process: lignin catabolic process (GO:0046274),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: apoplast (GO:0048046),Molecular Function: copper ion binding (GO:0005507),Molecular Function: laccase activity (GO:0008471),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Multicopper oxidase%2C type 1 (IPR001117),Cupredoxin (IPR008972),Multicopper oxidase%2C type 3 (IPR011707),Laccase (IPR017761);Oryzabase=21613;TENOR=Os01t0843800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	36236705	36237222	.	+	0	Parent=Os01t0843800-00
Chr01	irgsp1_rep	CDS	36237332	36237579	.	+	1	Parent=Os01t0843800-00
Chr01	irgsp1_rep	CDS	36237660	36237788	.	+	2	Parent=Os01t0843800-00
Chr01	irgsp1_rep	CDS	36237871	36238538	.	+	2	Parent=Os01t0843800-00
Chr01	irgsp1_rep	three_prime_UTR	36238539	36238827	.	+	.	Parent=Os01t0843800-00
Chr01	irgsp1_rep	three_prime_UTR	36238936	36239144	.	+	.	Parent=Os01t0843800-00
Chr01	irgsp1_rep	mRNA	36248519	36248977	.	+	.	ID=Os01t0844000-00;Name=Os01t0844000-00;Locus_id=Os01g0844000;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5N9W3 (UniProt);TENOR=Os01t0844000-00
Chr01	irgsp1_rep	CDS	36248519	36248977	.	+	0	Parent=Os01t0844000-00
Chr01	irgsp1_rep	mRNA	36251954	36252630	.	+	.	ID=Os01t0844200-01;Name=Os01t0844200-01;Locus_id=Os01g0844200;Note=DVL family protein.;Transcript_evidence=AK109255 (DDBJ%2C Best hit);ORF_evidence=B8AC25 (UniProt);InterPro=DVL (IPR012552);NIAS_FLcDNA=002-185-A05;Expression=AK109255;TENOR=Os01t0844200-01;KEGG=Os01t0844200-01
Chr01	irgsp1_rep	five_prime_UTR	36251954	36252108	.	+	.	Parent=Os01t0844200-01
Chr01	irgsp1_rep	CDS	36252109	36252339	.	+	0	Parent=Os01t0844200-01
Chr01	irgsp1_rep	three_prime_UTR	36252340	36252630	.	+	.	Parent=Os01t0844200-01
Chr01	irgsp1_rep	mRNA	36253547	36256956	.	+	.	ID=Os01t0844300-01;Name=Os01t0844300-01;Locus_id=Os01g0844300;RAP-DB Gene Symbol Synonym(s)=OsFKBP20-1b;RAP-DB Gene Name Synonym(s)=FK506-binding protein 20-1b;CGSNL Gene Symbol=FKBP20-1B;CGSNL Gene Name=FK506 BINDING PROTEIN 20-1B;Oryzabase Gene Symbol Synonym(s)=OsFKBP20-1b;Oryzabase Gene Name Synonym(s)=FK506 binding protein 20-1b;Note=FK506-binding protein%2C Immunophilin family protein%2C Mediation of RNA processing%2C Post-transcriptional regulation of abiotic stress response;Transcript_evidence=AK105246;ORF_evidence=Q5N9W0;GO=Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);InterPro=FKBP-type peptidyl-prolyl cis-trans isomerase domain (IPR001179);NIAS_FLcDNA=001-113-H11;Manual Curation=January 14%2C 2020;Literature_PMID=31925835;Oryzabase=10037;Expression=AK105246;TENOR=Os01t0844300-01;KEGG=Os01t0844300-01 (EC:5.2.1.8);Subcellular location=nuclear body (GO:0016604) [4-week-old%2C the third upper leaves],cytoplasmic foci (GO:0000932) [4-week-old%2C the third upper leaves],nucleoplasm (GO:0005654) [5-week-old%2C the third upper leaves],cytoplasm (GO:0005737) [5-week-old%2C the third upper leaves]
Chr01	irgsp1_rep	five_prime_UTR	36253547	36253702	.	+	.	Parent=Os01t0844300-01
Chr01	irgsp1_rep	five_prime_UTR	36254057	36254183	.	+	.	Parent=Os01t0844300-01
Chr01	irgsp1_rep	five_prime_UTR	36255010	36255180	.	+	.	Parent=Os01t0844300-01
Chr01	irgsp1_rep	five_prime_UTR	36255581	36255606	.	+	.	Parent=Os01t0844300-01
Chr01	irgsp1_rep	CDS	36255607	36255715	.	+	0	Parent=Os01t0844300-01
Chr01	irgsp1_rep	CDS	36255812	36255945	.	+	2	Parent=Os01t0844300-01
Chr01	irgsp1_rep	CDS	36256037	36256116	.	+	0	Parent=Os01t0844300-01
Chr01	irgsp1_rep	CDS	36256215	36256307	.	+	1	Parent=Os01t0844300-01
Chr01	irgsp1_rep	CDS	36256547	36256688	.	+	1	Parent=Os01t0844300-01
Chr01	irgsp1_rep	three_prime_UTR	36256689	36256956	.	+	.	Parent=Os01t0844300-01
Chr01	irgsp1_rep	mRNA	36257567	36261744	.	-	.	ID=Os01t0844400-01;Name=Os01t0844400-01;Locus_id=Os01g0844400;Note=Similar to palmitoyltransferase PFA4.;Transcript_evidence=AK070434 (DDBJ%2C Best hit);ORF_evidence=NP_001149040.1 (RefSeq);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C DHHC-type%2C palmitoyltransferase (IPR001594);NIAS_FLcDNA=J023051F22;Expression=AK070434;TENOR=Os01t0844400-01;KEGG=Os01t0844400-01
Chr01	irgsp1_rep	five_prime_UTR	36261526	36261744	.	-	.	Parent=Os01t0844400-01
Chr01	irgsp1_rep	CDS	36261250	36261525	.	-	0	Parent=Os01t0844400-01
Chr01	irgsp1_rep	CDS	36259967	36260059	.	-	0	Parent=Os01t0844400-01
Chr01	irgsp1_rep	CDS	36259778	36259879	.	-	0	Parent=Os01t0844400-01
Chr01	irgsp1_rep	CDS	36259646	36259684	.	-	0	Parent=Os01t0844400-01
Chr01	irgsp1_rep	three_prime_UTR	36259620	36259645	.	-	.	Parent=Os01t0844400-01
Chr01	irgsp1_rep	three_prime_UTR	36259432	36259530	.	-	.	Parent=Os01t0844400-01
Chr01	irgsp1_rep	three_prime_UTR	36259255	36259350	.	-	.	Parent=Os01t0844400-01
Chr01	irgsp1_rep	three_prime_UTR	36257567	36258082	.	-	.	Parent=Os01t0844400-01
Chr01	irgsp1_rep	mRNA	36257567	36261729	.	-	.	ID=Os01t0844400-02;Name=Os01t0844400-02;Locus_id=Os01g0844400;Note=Zinc finger%2C DHHC-type domain containing protein.;Transcript_evidence=AK071686 (DDBJ%2C Best hit);ORF_evidence=NP_001149040.1 (RefSeq);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C DHHC-type%2C palmitoyltransferase (IPR001594);NIAS_FLcDNA=J023109M13;Expression=AK071686;TENOR=Os01t0844400-02;KEGG=Os01t0844400-02
Chr01	irgsp1_rep	five_prime_UTR	36261526	36261729	.	-	.	Parent=Os01t0844400-02
Chr01	irgsp1_rep	CDS	36261250	36261525	.	-	0	Parent=Os01t0844400-02
Chr01	irgsp1_rep	CDS	36259967	36260059	.	-	0	Parent=Os01t0844400-02
Chr01	irgsp1_rep	CDS	36259778	36259879	.	-	0	Parent=Os01t0844400-02
Chr01	irgsp1_rep	CDS	36259620	36259697	.	-	0	Parent=Os01t0844400-02
Chr01	irgsp1_rep	CDS	36259432	36259530	.	-	0	Parent=Os01t0844400-02
Chr01	irgsp1_rep	CDS	36259255	36259350	.	-	0	Parent=Os01t0844400-02
Chr01	irgsp1_rep	CDS	36257972	36258082	.	-	0	Parent=Os01t0844400-02
Chr01	irgsp1_rep	three_prime_UTR	36257567	36257971	.	-	.	Parent=Os01t0844400-02
Chr01	irgsp1_rep	mRNA	36268205	36269639	.	-	.	ID=Os01t0844500-00;Name=Os01t0844500-00;Locus_id=Os01g0844500;Note=Peptidase aspartic%2C catalytic domain containing protein.;Transcript_evidence=EU944384 (DDBJ);ORF_evidence=NP_001044781.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);TENOR=Os01t0844500-00;KEGG=Os01t0844500-00
Chr01	irgsp1_rep	five_prime_UTR	36269571	36269639	.	-	.	Parent=Os01t0844500-00
Chr01	irgsp1_rep	CDS	36268224	36269570	.	-	0	Parent=Os01t0844500-00
Chr01	irgsp1_rep	three_prime_UTR	36268205	36268223	.	-	.	Parent=Os01t0844500-00
Chr01	irgsp1_rep	mRNA	36274026	36274733	.	-	.	ID=Os01t0844700-00;Name=Os01t0844700-00;Locus_id=Os01g0844700;Note=Similar to protein binding protein.;Transcript_evidence=AK354388 (DDBJ);ORF_evidence=NP_001149943.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os01t0844700-00
Chr01	irgsp1_rep	CDS	36274026	36274733	.	-	0	Parent=Os01t0844700-00
Chr01	irgsp1_rep	mRNA	36278953	36286380	.	+	.	ID=Os01t0844800-01;Name=Os01t0844800-01;Locus_id=Os01g0844800;Note=Similar to Pumilio RBD (Fragment).;Transcript_evidence=AK099801 (DDBJ%2C Best hit);ORF_evidence=Q8S249 (UniProt);GO=Molecular Function: RNA binding (GO:0003723),Molecular Function: binding (GO:0005488);InterPro=Pumilio RNA-binding repeat (IPR001313),Armadillo-like helical (IPR011989),Nucleic acid binding NABP (IPR012940),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013098A15;Expression=AK099801;TENOR=Os01t0844800-01;KEGG=Os01t0844800-01
Chr01	irgsp1_rep	five_prime_UTR	36278953	36279302	.	+	.	Parent=Os01t0844800-01
Chr01	irgsp1_rep	five_prime_UTR	36279411	36279420	.	+	.	Parent=Os01t0844800-01
Chr01	irgsp1_rep	CDS	36279421	36280080	.	+	0	Parent=Os01t0844800-01
Chr01	irgsp1_rep	CDS	36280963	36282503	.	+	0	Parent=Os01t0844800-01
Chr01	irgsp1_rep	CDS	36283090	36283231	.	+	1	Parent=Os01t0844800-01
Chr01	irgsp1_rep	CDS	36283363	36283470	.	+	0	Parent=Os01t0844800-01
Chr01	irgsp1_rep	CDS	36283555	36283767	.	+	0	Parent=Os01t0844800-01
Chr01	irgsp1_rep	CDS	36283854	36283964	.	+	0	Parent=Os01t0844800-01
Chr01	irgsp1_rep	CDS	36284797	36284991	.	+	0	Parent=Os01t0844800-01
Chr01	irgsp1_rep	CDS	36285615	36285789	.	+	0	Parent=Os01t0844800-01
Chr01	irgsp1_rep	CDS	36285930	36285967	.	+	2	Parent=Os01t0844800-01
Chr01	irgsp1_rep	three_prime_UTR	36285968	36286380	.	+	.	Parent=Os01t0844800-01
Chr01	irgsp1_rep	mRNA	36278957	36283586	.	+	.	ID=Os01t0844800-02;Name=Os01t0844800-02;Locus_id=Os01g0844800;Note=Hypothetical conserved gene.;Transcript_evidence=AK102882 (DDBJ%2C Best hit);ORF_evidence=Q8S249 (UniProt);GO=Molecular Function: RNA binding (GO:0003723),Molecular Function: binding (GO:0005488);InterPro=Pumilio RNA-binding repeat (IPR001313),Armadillo-like helical (IPR011989),Nucleic acid binding NABP (IPR012940),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033112I24;TENOR=Os01t0844800-02
Chr01	irgsp1_rep	five_prime_UTR	36278957	36279302	.	+	.	Parent=Os01t0844800-02
Chr01	irgsp1_rep	five_prime_UTR	36279411	36279420	.	+	.	Parent=Os01t0844800-02
Chr01	irgsp1_rep	CDS	36279421	36280080	.	+	0	Parent=Os01t0844800-02
Chr01	irgsp1_rep	CDS	36280963	36282503	.	+	0	Parent=Os01t0844800-02
Chr01	irgsp1_rep	CDS	36283090	36283231	.	+	1	Parent=Os01t0844800-02
Chr01	irgsp1_rep	CDS	36283363	36283470	.	+	0	Parent=Os01t0844800-02
Chr01	irgsp1_rep	CDS	36283555	36283586	.	+	0	Parent=Os01t0844800-02
Chr01	irgsp1_rep	mRNA	36279485	36286374	.	+	.	ID=Os01t0844800-03;Name=Os01t0844800-03;Locus_id=Os01g0844800;Note=Similar to predicted protein.;Transcript_evidence=AK103686 (DDBJ%2C Best hit);ORF_evidence=Q8S249 (UniProt);GO=Molecular Function: RNA binding (GO:0003723),Molecular Function: binding (GO:0005488);InterPro=Pumilio RNA-binding repeat (IPR001313),Armadillo-like helical (IPR011989),Nucleic acid binding NABP (IPR012940),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033136F19;Expression=AK103686;TENOR=Os01t0844800-03;KEGG=Os01t0844800-03
Chr01	irgsp1_rep	five_prime_UTR	36279485	36279486	.	+	.	Parent=Os01t0844800-03
Chr01	irgsp1_rep	CDS	36279487	36280080	.	+	0	Parent=Os01t0844800-03
Chr01	irgsp1_rep	CDS	36280963	36282503	.	+	0	Parent=Os01t0844800-03
Chr01	irgsp1_rep	CDS	36283090	36283231	.	+	1	Parent=Os01t0844800-03
Chr01	irgsp1_rep	CDS	36283363	36283470	.	+	0	Parent=Os01t0844800-03
Chr01	irgsp1_rep	CDS	36283555	36283767	.	+	0	Parent=Os01t0844800-03
Chr01	irgsp1_rep	CDS	36283854	36283964	.	+	0	Parent=Os01t0844800-03
Chr01	irgsp1_rep	CDS	36284797	36284991	.	+	0	Parent=Os01t0844800-03
Chr01	irgsp1_rep	CDS	36285615	36285789	.	+	0	Parent=Os01t0844800-03
Chr01	irgsp1_rep	CDS	36285930	36285967	.	+	2	Parent=Os01t0844800-03
Chr01	irgsp1_rep	three_prime_UTR	36285968	36286374	.	+	.	Parent=Os01t0844800-03
Chr01	irgsp1_rep	mRNA	36279724	36283198	.	-	.	ID=Os01t0844850-00;Name=Os01t0844850-00;Locus_id=Os01g0844850;Note=Non-protein coding transcript.;Transcript_evidence=BT083530 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0844850-00
Chr01	irgsp1_rep	exon	36283052	36283198	.	-	.	Parent=Os01t0844850-00
Chr01	irgsp1_rep	exon	36281776	36282468	.	-	.	Parent=Os01t0844850-00
Chr01	irgsp1_rep	exon	36280966	36281521	.	-	.	Parent=Os01t0844850-00
Chr01	irgsp1_rep	exon	36279724	36279941	.	-	.	Parent=Os01t0844850-00
Chr01	irgsp1_rep	mRNA	36287282	36289641	.	+	.	ID=Os01t0844900-01;Name=Os01t0844900-01;Locus_id=Os01g0844900;Note=Homeodomain-like containing protein.;Transcript_evidence=AK066659 (DDBJ%2C Best hit);ORF_evidence=B8AC28 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J013068K17;Expression=AK066659;TENOR=Os01t0844900-01;KEGG=Os01t0844900-01
Chr01	irgsp1_rep	five_prime_UTR	36287282	36287350	.	+	.	Parent=Os01t0844900-01
Chr01	irgsp1_rep	CDS	36287351	36288010	.	+	0	Parent=Os01t0844900-01
Chr01	irgsp1_rep	three_prime_UTR	36288011	36289641	.	+	.	Parent=Os01t0844900-01
Chr01	irgsp1_rep	mRNA	36297008	36298858	.	+	.	ID=Os01t0845000-01;Name=Os01t0845000-01;Locus_id=Os01g0845000;Note=Hypothetical conserved gene.;Transcript_evidence=AK287550 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065018E01;TENOR=Os01t0845000-01;KEGG=Os01t0845000-01
Chr01	irgsp1_rep	five_prime_UTR	36297008	36297009	.	+	.	Parent=Os01t0845000-01
Chr01	irgsp1_rep	CDS	36297010	36298563	.	+	0	Parent=Os01t0845000-01
Chr01	irgsp1_rep	three_prime_UTR	36298564	36298858	.	+	.	Parent=Os01t0845000-01
Chr01	irgsp1_rep	mRNA	36296586	36298621	.	-	.	ID=Os01t0845100-01;Name=Os01t0845100-01;Locus_id=Os01g0845100;CGSNL Gene Symbol=DUF668-1;CGSNL Gene Name=DUF668 FAMILY MEMBER 1;Oryzabase Gene Symbol Synonym(s)=OsDUF668-1;Oryzabase Gene Name Synonym(s)=DUF668 family member 1;Note=Protein of unknown function DUF668 family protein.;Transcript_evidence=AK106438 (DDBJ%2C Best hit);ORF_evidence=B6SYK7 (UniProt);InterPro=Protein of unknown function DUF668 (IPR007700);NIAS_FLcDNA=002-103-D06;Oryzabase=23480;Expression=AK106438;TENOR=Os01t0845100-01;KEGG=Os01t0845100-01
Chr01	irgsp1_rep	five_prime_UTR	36298447	36298621	.	-	.	Parent=Os01t0845100-01
Chr01	irgsp1_rep	CDS	36298408	36298446	.	-	0	Parent=Os01t0845100-01
Chr01	irgsp1_rep	CDS	36297016	36297879	.	-	0	Parent=Os01t0845100-01
Chr01	irgsp1_rep	three_prime_UTR	36296586	36297015	.	-	.	Parent=Os01t0845100-01
Chr01	irgsp1_rep	mRNA	36323780	36325014	.	+	.	ID=Os01t0845950-01;Name=Os01t0845950-01;Locus_id=Os01g0845950;Note=Conserved hypothetical protein.;Transcript_evidence=AK240858 (DDBJ%2C Best hit);ORF_evidence=Q2QP73 (UniProt);NIAS_FLcDNA=J065022F03;TENOR=Os01t0845950-01;KEGG=Os01t0845950-01
Chr01	irgsp1_rep	CDS	36323780	36323867	.	+	0	Parent=Os01t0845950-01
Chr01	irgsp1_rep	CDS	36324192	36324532	.	+	2	Parent=Os01t0845950-01
Chr01	irgsp1_rep	three_prime_UTR	36324533	36325014	.	+	.	Parent=Os01t0845950-01
Chr01	irgsp1_rep	mRNA	36325343	36336541	.	-	.	ID=Os01t0846000-01;Name=Os01t0846000-01;Locus_id=Os01g0846000;Note=Nucleic acid-binding%2C OB-fold domain containing protein.;Transcript_evidence=AK066114 (DDBJ%2C Best hit);ORF_evidence=NP_001051944.1 (RefSeq);InterPro=Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=J013055N07;TENOR=Os01t0846000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	36336408	36336541	.	-	.	Parent=Os01t0846000-01
Chr01	irgsp1_rep	five_prime_UTR	36336050	36336143	.	-	.	Parent=Os01t0846000-01
Chr01	irgsp1_rep	five_prime_UTR	36335699	36335740	.	-	.	Parent=Os01t0846000-01
Chr01	irgsp1_rep	five_prime_UTR	36335644	36335670	.	-	.	Parent=Os01t0846000-01
Chr01	irgsp1_rep	five_prime_UTR	36334669	36334724	.	-	.	Parent=Os01t0846000-01
Chr01	irgsp1_rep	five_prime_UTR	36334499	36334567	.	-	.	Parent=Os01t0846000-01
Chr01	irgsp1_rep	five_prime_UTR	36334339	36334407	.	-	.	Parent=Os01t0846000-01
Chr01	irgsp1_rep	five_prime_UTR	36334069	36334110	.	-	.	Parent=Os01t0846000-01
Chr01	irgsp1_rep	five_prime_UTR	36333878	36333973	.	-	.	Parent=Os01t0846000-01
Chr01	irgsp1_rep	five_prime_UTR	36333682	36333753	.	-	.	Parent=Os01t0846000-01
Chr01	irgsp1_rep	five_prime_UTR	36328489	36328628	.	-	.	Parent=Os01t0846000-01
Chr01	irgsp1_rep	CDS	36328485	36328488	.	-	0	Parent=Os01t0846000-01
Chr01	irgsp1_rep	CDS	36328135	36328407	.	-	2	Parent=Os01t0846000-01
Chr01	irgsp1_rep	CDS	36327923	36328019	.	-	2	Parent=Os01t0846000-01
Chr01	irgsp1_rep	CDS	36327570	36327697	.	-	1	Parent=Os01t0846000-01
Chr01	irgsp1_rep	CDS	36327420	36327478	.	-	2	Parent=Os01t0846000-01
Chr01	irgsp1_rep	three_prime_UTR	36327397	36327419	.	-	.	Parent=Os01t0846000-01
Chr01	irgsp1_rep	three_prime_UTR	36326885	36327253	.	-	.	Parent=Os01t0846000-01
Chr01	irgsp1_rep	three_prime_UTR	36326335	36326765	.	-	.	Parent=Os01t0846000-01
Chr01	irgsp1_rep	three_prime_UTR	36326190	36326244	.	-	.	Parent=Os01t0846000-01
Chr01	irgsp1_rep	three_prime_UTR	36326039	36326108	.	-	.	Parent=Os01t0846000-01
Chr01	irgsp1_rep	three_prime_UTR	36325867	36325952	.	-	.	Parent=Os01t0846000-01
Chr01	irgsp1_rep	three_prime_UTR	36325343	36325778	.	-	.	Parent=Os01t0846000-01
Chr01	irgsp1_rep	mRNA	36344525	36345836	.	-	.	ID=Os01t0846150-00;Name=Os01t0846150-00;Locus_id=Os01g0846150;Note=Hypothetical gene.;Transcript_evidence=BT086014 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0846150-00;KEGG=Os01t0846150-00
Chr01	irgsp1_rep	five_prime_UTR	36345764	36345836	.	-	.	Parent=Os01t0846150-00
Chr01	irgsp1_rep	CDS	36345474	36345763	.	-	0	Parent=Os01t0846150-00
Chr01	irgsp1_rep	CDS	36345317	36345374	.	-	1	Parent=Os01t0846150-00
Chr01	irgsp1_rep	three_prime_UTR	36344525	36345316	.	-	.	Parent=Os01t0846150-00
Chr01	irgsp1_rep	mRNA	36343948	36346009	.	+	.	ID=Os01t0846300-01;Name=Os01t0846300-01;Locus_id=Os01g0846300;RAP-DB Gene Symbol Synonym(s)=OsPP2C09;RAP-DB Gene Name Synonym(s)=protein phosphatase 2C09;Oryzabase Gene Symbol Synonym(s)=OsPP15%2C PP15%2C OsPP2C09%2C OsPP2C9%2C PP2C9;Oryzabase Gene Name Synonym(s)=protein phosphatase 15%2C protein phosphatase 2C09%2C protein phosphatase 2C9%2C protein phosphatase 2C 9;Note=Clade A type 2C protein phosphatase (PP2C)%2C Negative regulation of drought tolerance through ABA signaling%2C Regulation of the trade-off between plant growth and drought tolerance;Transcript_evidence=AK065949;ORF_evidence=Q5N9N2;GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: cation binding (GO:0043169);InterPro=PPM-type phosphatase domain superfamily (IPR036457),PPM-type phosphatase domain (IPR001932),PPM-type phosphatase%2C divalent cation binding (IPR000222);NIAS_FLcDNA=J013046H22;Manual Curation=May 21%2C 2020;Literature_PMID=32433775,19021904;Oryzabase=13612;Expression=AK065949;TENOR=Os01t0846300-01;KEGG=Os01t0846300-01 (EC:3.1.3.16);Subcellular location=nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	36343948	36344291	.	+	.	Parent=Os01t0846300-01
Chr01	irgsp1_rep	CDS	36344292	36344717	.	+	0	Parent=Os01t0846300-01
Chr01	irgsp1_rep	CDS	36344809	36345138	.	+	0	Parent=Os01t0846300-01
Chr01	irgsp1_rep	CDS	36345264	36345369	.	+	0	Parent=Os01t0846300-01
Chr01	irgsp1_rep	CDS	36345463	36345845	.	+	2	Parent=Os01t0846300-01
Chr01	irgsp1_rep	three_prime_UTR	36345846	36346009	.	+	.	Parent=Os01t0846300-01
Chr01	irgsp1_rep	mRNA	36343993	36346009	.	+	.	ID=Os01t0846300-02;Name=Os01t0846300-02;Locus_id=Os01g0846300;Oryzabase Gene Symbol Synonym(s)=OsPP15%2C PP15%2C OsPP2C09%2C OsPP2C9%2C PP2C9;Oryzabase Gene Name Synonym(s)=protein phosphatase 15%2C protein phosphatase 2C09%2C protein phosphatase 2C9%2C protein phosphatase 2C 9;Note=Similar to protein phosphatase 2C.;Transcript_evidence=AK071996 (DDBJ%2C Best hit);ORF_evidence=B9EUE1 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J013091F23;Oryzabase=13612;Expression=AK071996;TENOR=Os01t0846300-02;KEGG=Os01t0846300-02
Chr01	irgsp1_rep	five_prime_UTR	36343993	36344291	.	+	.	Parent=Os01t0846300-02
Chr01	irgsp1_rep	CDS	36344292	36344717	.	+	0	Parent=Os01t0846300-02
Chr01	irgsp1_rep	CDS	36344809	36345171	.	+	0	Parent=Os01t0846300-02
Chr01	irgsp1_rep	three_prime_UTR	36345172	36345369	.	+	.	Parent=Os01t0846300-02
Chr01	irgsp1_rep	three_prime_UTR	36345463	36346009	.	+	.	Parent=Os01t0846300-02
Chr01	irgsp1_rep	mRNA	36346113	36349545	.	+	.	ID=Os01t0846400-01;Name=Os01t0846400-01;Locus_id=Os01g0846400;Note=Conserved hypothetical protein.;Transcript_evidence=AK119400 (DDBJ%2C Best hit);ORF_evidence=B8AC30 (UniProt);NIAS_FLcDNA=001-132-E01;Expression=AK119400;TENOR=Os01t0846400-01;KEGG=Os01t0846400-01
Chr01	irgsp1_rep	five_prime_UTR	36346113	36347012	.	+	.	Parent=Os01t0846400-01
Chr01	irgsp1_rep	CDS	36347013	36347399	.	+	0	Parent=Os01t0846400-01
Chr01	irgsp1_rep	three_prime_UTR	36347400	36348609	.	+	.	Parent=Os01t0846400-01
Chr01	irgsp1_rep	three_prime_UTR	36348624	36349545	.	+	.	Parent=Os01t0846400-01
Chr01	irgsp1_rep	mRNA	36353072	36358534	.	+	.	ID=Os01t0846450-01;Name=Os01t0846450-01;Locus_id=Os01g0846450;Oryzabase Gene Name Synonym(s)=a homolog of Arabidopsis thaliana HEN1 suppressor 1%2C HESO1 homolog;Note=Hypothetical conserved gene.;Transcript_evidence=AK242908 (DDBJ%2C Best hit);ORF_evidence=B8AC31 (UniProt);NIAS_FLcDNA=J090082L19;Oryzabase=21339;TENOR=Os01t0846450-01;KEGG=Os01t0846450-01
Chr01	irgsp1_rep	five_prime_UTR	36353072	36353349	.	+	.	Parent=Os01t0846450-01
Chr01	irgsp1_rep	five_prime_UTR	36354474	36354482	.	+	.	Parent=Os01t0846450-01
Chr01	irgsp1_rep	CDS	36354483	36354630	.	+	0	Parent=Os01t0846450-01
Chr01	irgsp1_rep	CDS	36355350	36355505	.	+	2	Parent=Os01t0846450-01
Chr01	irgsp1_rep	CDS	36355824	36356002	.	+	2	Parent=Os01t0846450-01
Chr01	irgsp1_rep	CDS	36356088	36356225	.	+	0	Parent=Os01t0846450-01
Chr01	irgsp1_rep	three_prime_UTR	36356226	36356326	.	+	.	Parent=Os01t0846450-01
Chr01	irgsp1_rep	three_prime_UTR	36356412	36356542	.	+	.	Parent=Os01t0846450-01
Chr01	irgsp1_rep	three_prime_UTR	36357193	36357300	.	+	.	Parent=Os01t0846450-01
Chr01	irgsp1_rep	three_prime_UTR	36357395	36358534	.	+	.	Parent=Os01t0846450-01
Chr01	irgsp1_rep	mRNA	36353072	36358534	.	+	.	ID=Os01t0846450-02;Name=Os01t0846450-02;Locus_id=Os01g0846450;RAP-DB Gene Symbol Synonym(s)=HESO1;RAP-DB Gene Name Synonym(s)=a homolog of Arabidopsis thaliana HEN1 suppressor 1;Oryzabase Gene Name Synonym(s)=a homolog of Arabidopsis thaliana HEN1 suppressor 1%2C HESO1 homolog;Note=Homolog of Arabidopsis thaliana HEN1 suppressor 1%2C Heading date;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;Manual Curation=August 30%2C 2017;Literature_PMID=27322545;Oryzabase=21339
Chr01	irgsp1_rep	five_prime_UTR	36353072	36353349	.	+	.	Parent=Os01t0846450-02
Chr01	irgsp1_rep	five_prime_UTR	36354474	36354482	.	+	.	Parent=Os01t0846450-02
Chr01	irgsp1_rep	CDS	36354483	36354630	.	+	0	Parent=Os01t0846450-02
Chr01	irgsp1_rep	CDS	36355350	36355505	.	+	2	Parent=Os01t0846450-02
Chr01	irgsp1_rep	CDS	36355824	36356002	.	+	2	Parent=Os01t0846450-02
Chr01	irgsp1_rep	CDS	36356088	36356183	.	+	0	Parent=Os01t0846450-02
Chr01	irgsp1_rep	CDS	36356266	36356326	.	+	0	Parent=Os01t0846450-02
Chr01	irgsp1_rep	CDS	36356412	36356542	.	+	2	Parent=Os01t0846450-02
Chr01	irgsp1_rep	CDS	36357193	36357300	.	+	0	Parent=Os01t0846450-02
Chr01	irgsp1_rep	CDS	36357395	36358027	.	+	0	Parent=Os01t0846450-02
Chr01	irgsp1_rep	three_prime_UTR	36358028	36358534	.	+	.	Parent=Os01t0846450-02
Chr01	irgsp1_rep	mRNA	36359709	36365435	.	+	.	ID=Os01t0846500-01;Name=Os01t0846500-01;Locus_id=Os01g0846500;CGSNL Gene Symbol=NTP3;CGSNL Gene Name=NUCLEOTIDYL TRANSFERASE PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsNTP3;Oryzabase Gene Name Synonym(s)=nucleotidyl transferase protein 3;Note=Hypothetical conserved gene.;Transcript_evidence=AK073619 (DDBJ%2C Best hit);ORF_evidence=B8AC32 (UniProt);NIAS_FLcDNA=J033047E14;Oryzabase=21886;Expression=AK073619;TENOR=Os01t0846500-01;KEGG=Os01t0846500-01
Chr01	irgsp1_rep	five_prime_UTR	36359709	36359903	.	+	.	Parent=Os01t0846500-01
Chr01	irgsp1_rep	five_prime_UTR	36361072	36361080	.	+	.	Parent=Os01t0846500-01
Chr01	irgsp1_rep	CDS	36361081	36361234	.	+	0	Parent=Os01t0846500-01
Chr01	irgsp1_rep	CDS	36362522	36362683	.	+	2	Parent=Os01t0846500-01
Chr01	irgsp1_rep	CDS	36363020	36363198	.	+	2	Parent=Os01t0846500-01
Chr01	irgsp1_rep	CDS	36363273	36363368	.	+	0	Parent=Os01t0846500-01
Chr01	irgsp1_rep	CDS	36363460	36363672	.	+	0	Parent=Os01t0846500-01
Chr01	irgsp1_rep	three_prime_UTR	36363673	36363755	.	+	.	Parent=Os01t0846500-01
Chr01	irgsp1_rep	three_prime_UTR	36364335	36364442	.	+	.	Parent=Os01t0846500-01
Chr01	irgsp1_rep	three_prime_UTR	36364547	36365435	.	+	.	Parent=Os01t0846500-01
Chr01	irgsp1_rep	mRNA	36359740	36365448	.	+	.	ID=Os01t0846500-02;Name=Os01t0846500-02;Locus_id=Os01g0846500;CGSNL Gene Symbol=NTP3;CGSNL Gene Name=NUCLEOTIDYL TRANSFERASE PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsNTP3;Oryzabase Gene Name Synonym(s)=nucleotidyl transferase protein 3;Note=PAP/25A core domain containing protein.;Transcript_evidence=AK072322 (DDBJ%2C Best hit);ORF_evidence=B7EMF8 (UniProt);NIAS_FLcDNA=J023029E20;Oryzabase=21886;Expression=AK072322;TENOR=Os01t0846500-02;KEGG=Os01t0846500-02
Chr01	irgsp1_rep	five_prime_UTR	36359740	36359903	.	+	.	Parent=Os01t0846500-02
Chr01	irgsp1_rep	five_prime_UTR	36361072	36361080	.	+	.	Parent=Os01t0846500-02
Chr01	irgsp1_rep	CDS	36361081	36361234	.	+	0	Parent=Os01t0846500-02
Chr01	irgsp1_rep	CDS	36362522	36362683	.	+	2	Parent=Os01t0846500-02
Chr01	irgsp1_rep	CDS	36363020	36363198	.	+	2	Parent=Os01t0846500-02
Chr01	irgsp1_rep	CDS	36363273	36363368	.	+	0	Parent=Os01t0846500-02
Chr01	irgsp1_rep	CDS	36363460	36363526	.	+	0	Parent=Os01t0846500-02
Chr01	irgsp1_rep	CDS	36363622	36363755	.	+	2	Parent=Os01t0846500-02
Chr01	irgsp1_rep	CDS	36364335	36364442	.	+	0	Parent=Os01t0846500-02
Chr01	irgsp1_rep	CDS	36364547	36364792	.	+	0	Parent=Os01t0846500-02
Chr01	irgsp1_rep	three_prime_UTR	36364793	36365448	.	+	.	Parent=Os01t0846500-02
Chr01	irgsp1_rep	mRNA	36366214	36366328	.	-	.	ID=Os01t0846525-00;Name=Os01t0846525-00;Locus_id=Os01g0846525;Note=Non-protein coding transcript.;Transcript_evidence=EU942158 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0846525-00
Chr01	irgsp1_rep	exon	36366214	36366328	.	-	.	Parent=Os01t0846525-00
Chr01	irgsp1_rep	mRNA	36367682	36367919	.	-	.	ID=Os01t0846550-00;Name=Os01t0846550-00;Locus_id=Os01g0846550;Note=Non-protein coding transcript.;Transcript_evidence=EU943442 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0846550-00
Chr01	irgsp1_rep	exon	36367682	36367919	.	-	.	Parent=Os01t0846550-00
Chr01	irgsp1_rep	mRNA	36368248	36373939	.	-	.	ID=Os01t0846600-01;Name=Os01t0846600-01;Locus_id=Os01g0846600;Note=Protein of unknown function DUF248%2C methyltransferase putative family protein.;Transcript_evidence=AK070193 (DDBJ%2C Best hit);ORF_evidence=B6SWB7 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Protein of unknown function DUF248%2C methyltransferase putative (IPR004159);NIAS_FLcDNA=J023041I24;Expression=AK070193;TENOR=Os01t0846600-01;KEGG=Os01t0846600-01
Chr01	irgsp1_rep	five_prime_UTR	36373832	36373939	.	-	.	Parent=Os01t0846600-01
Chr01	irgsp1_rep	CDS	36373124	36373831	.	-	0	Parent=Os01t0846600-01
Chr01	irgsp1_rep	CDS	36372255	36372404	.	-	0	Parent=Os01t0846600-01
Chr01	irgsp1_rep	CDS	36371900	36372170	.	-	0	Parent=Os01t0846600-01
Chr01	irgsp1_rep	CDS	36371443	36371553	.	-	2	Parent=Os01t0846600-01
Chr01	irgsp1_rep	CDS	36370655	36370814	.	-	2	Parent=Os01t0846600-01
Chr01	irgsp1_rep	CDS	36369947	36370204	.	-	1	Parent=Os01t0846600-01
Chr01	irgsp1_rep	CDS	36369426	36369548	.	-	1	Parent=Os01t0846600-01
Chr01	irgsp1_rep	CDS	36368989	36369066	.	-	1	Parent=Os01t0846600-01
Chr01	irgsp1_rep	CDS	36368510	36368714	.	-	1	Parent=Os01t0846600-01
Chr01	irgsp1_rep	three_prime_UTR	36368248	36368509	.	-	.	Parent=Os01t0846600-01
Chr01	irgsp1_rep	mRNA	36368246	36372085	.	-	.	ID=Os01t0846600-02;Name=Os01t0846600-02;Locus_id=Os01g0846600;Note=Similar to ankyrin-like protein.;Transcript_evidence=AK059069 (DDBJ%2C Best hit);ORF_evidence=B6SWB7 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Protein of unknown function DUF248%2C methyltransferase putative (IPR004159);NIAS_FLcDNA=001-021-H02;Expression=AK059069;TENOR=Os01t0846600-02;KEGG=Os01t0846600-02
Chr01	irgsp1_rep	five_prime_UTR	36372084	36372085	.	-	.	Parent=Os01t0846600-02
Chr01	irgsp1_rep	CDS	36371900	36372083	.	-	0	Parent=Os01t0846600-02
Chr01	irgsp1_rep	CDS	36371443	36371553	.	-	2	Parent=Os01t0846600-02
Chr01	irgsp1_rep	CDS	36370655	36370814	.	-	2	Parent=Os01t0846600-02
Chr01	irgsp1_rep	CDS	36369947	36370204	.	-	1	Parent=Os01t0846600-02
Chr01	irgsp1_rep	CDS	36369426	36369548	.	-	1	Parent=Os01t0846600-02
Chr01	irgsp1_rep	CDS	36368989	36369066	.	-	1	Parent=Os01t0846600-02
Chr01	irgsp1_rep	CDS	36368510	36368714	.	-	1	Parent=Os01t0846600-02
Chr01	irgsp1_rep	three_prime_UTR	36368246	36368509	.	-	.	Parent=Os01t0846600-02
Chr01	irgsp1_rep	mRNA	36379625	36385146	.	-	.	ID=Os01t0846700-00;Name=Os01t0846700-00;Locus_id=Os01g0846700;Note=Hypothetical protein.;Transcript_evidence=tplb0026h15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0846700-00
Chr01	irgsp1_rep	five_prime_UTR	36384786	36385146	.	-	.	Parent=Os01t0846700-00
Chr01	irgsp1_rep	five_prime_UTR	36384090	36384182	.	-	.	Parent=Os01t0846700-00
Chr01	irgsp1_rep	five_prime_UTR	36383168	36383380	.	-	.	Parent=Os01t0846700-00
Chr01	irgsp1_rep	five_prime_UTR	36381824	36382071	.	-	.	Parent=Os01t0846700-00
Chr01	irgsp1_rep	five_prime_UTR	36381488	36381730	.	-	.	Parent=Os01t0846700-00
Chr01	irgsp1_rep	five_prime_UTR	36381268	36381387	.	-	.	Parent=Os01t0846700-00
Chr01	irgsp1_rep	five_prime_UTR	36381094	36381170	.	-	.	Parent=Os01t0846700-00
Chr01	irgsp1_rep	five_prime_UTR	36380927	36381013	.	-	.	Parent=Os01t0846700-00
Chr01	irgsp1_rep	five_prime_UTR	36380075	36380075	.	-	.	Parent=Os01t0846700-00
Chr01	irgsp1_rep	CDS	36379625	36380074	.	-	0	Parent=Os01t0846700-00
Chr01	irgsp1_rep	mRNA	36381991	36385123	.	+	.	ID=Os01t0846800-01;Name=Os01t0846800-01;Locus_id=Os01g0846800;Note=Regulator of Chromosome condensation%2C RCC1 domain containing protein.;Transcript_evidence=AK063080 (DDBJ%2C Best hit);ORF_evidence=B9EUE5 (UniProt);InterPro=Regulator of Chromosome condensation%2C RCC1 (IPR000408),Regulator of Chromosome condensation/beta-lactamase-inhibitor protein II (IPR009091);NIAS_FLcDNA=001-111-A02;TENOR=Os01t0846800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	36381991	36381991	.	+	.	Parent=Os01t0846800-01
Chr01	irgsp1_rep	CDS	36381992	36382064	.	+	0	Parent=Os01t0846800-01
Chr01	irgsp1_rep	CDS	36382678	36382721	.	+	2	Parent=Os01t0846800-01
Chr01	irgsp1_rep	CDS	36383203	36383385	.	+	0	Parent=Os01t0846800-01
Chr01	irgsp1_rep	CDS	36384088	36384178	.	+	0	Parent=Os01t0846800-01
Chr01	irgsp1_rep	CDS	36384700	36384743	.	+	2	Parent=Os01t0846800-01
Chr01	irgsp1_rep	CDS	36384826	36384948	.	+	0	Parent=Os01t0846800-01
Chr01	irgsp1_rep	three_prime_UTR	36384949	36385123	.	+	.	Parent=Os01t0846800-01
Chr01	irgsp1_rep	mRNA	36385625	36390411	.	-	.	ID=Os01t0846900-01;Name=Os01t0846900-01;Locus_id=Os01g0846900;Note=Histone-fold domain containing protein.;Transcript_evidence=AK101755 (DDBJ%2C Best hit);ORF_evidence=A2ZZJ3 (UniProt);GO=Biological Process: transcription initiation%2C DNA-dependent (GO:0006352),Cellular Component: transcription factor TFIID complex (GO:0005669),Molecular Function: DNA binding (GO:0003677);InterPro=Transcription initiation factor TFIID (IPR003228),Histone-fold (IPR009072);NIAS_FLcDNA=J033063K15;Expression=AK101755;TENOR=Os01t0846900-01;KEGG=Os01t0846900-01
Chr01	irgsp1_rep	five_prime_UTR	36390308	36390411	.	-	.	Parent=Os01t0846900-01
Chr01	irgsp1_rep	CDS	36389774	36390307	.	-	0	Parent=Os01t0846900-01
Chr01	irgsp1_rep	CDS	36388787	36388987	.	-	0	Parent=Os01t0846900-01
Chr01	irgsp1_rep	CDS	36387847	36388347	.	-	0	Parent=Os01t0846900-01
Chr01	irgsp1_rep	CDS	36387535	36387609	.	-	0	Parent=Os01t0846900-01
Chr01	irgsp1_rep	CDS	36387275	36387353	.	-	0	Parent=Os01t0846900-01
Chr01	irgsp1_rep	CDS	36387136	36387200	.	-	2	Parent=Os01t0846900-01
Chr01	irgsp1_rep	CDS	36386477	36386650	.	-	0	Parent=Os01t0846900-01
Chr01	irgsp1_rep	three_prime_UTR	36386433	36386476	.	-	.	Parent=Os01t0846900-01
Chr01	irgsp1_rep	three_prime_UTR	36385625	36386023	.	-	.	Parent=Os01t0846900-01
Chr01	irgsp1_rep	mRNA	36385692	36390379	.	+	.	ID=Os01t0847000-00;Name=Os01t0847000-00;Locus_id=Os01g0847000;Note=Hypothetical protein.;Transcript_evidence=tplb0053j23 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0847000-00
Chr01	irgsp1_rep	five_prime_UTR	36385692	36385972	.	+	.	Parent=Os01t0847000-00
Chr01	irgsp1_rep	five_prime_UTR	36386404	36386665	.	+	.	Parent=Os01t0847000-00
Chr01	irgsp1_rep	five_prime_UTR	36387138	36387200	.	+	.	Parent=Os01t0847000-00
Chr01	irgsp1_rep	five_prime_UTR	36387275	36387372	.	+	.	Parent=Os01t0847000-00
Chr01	irgsp1_rep	five_prime_UTR	36387555	36387606	.	+	.	Parent=Os01t0847000-00
Chr01	irgsp1_rep	five_prime_UTR	36387844	36388202	.	+	.	Parent=Os01t0847000-00
Chr01	irgsp1_rep	CDS	36388203	36388350	.	+	0	Parent=Os01t0847000-00
Chr01	irgsp1_rep	CDS	36388787	36388875	.	+	2	Parent=Os01t0847000-00
Chr01	irgsp1_rep	three_prime_UTR	36388876	36388987	.	+	.	Parent=Os01t0847000-00
Chr01	irgsp1_rep	three_prime_UTR	36389774	36390379	.	+	.	Parent=Os01t0847000-00
Chr01	irgsp1_rep	mRNA	36392080	36392685	.	+	.	ID=Os01t0847100-01;Name=Os01t0847100-01;Locus_id=Os01g0847100;Note=Conserved hypothetical protein.;Transcript_evidence=AK121513 (DDBJ%2C Best hit),AK063795 (DDBJ%2C Best hit);ORF_evidence=B8AC35 (UniProt);NIAS_FLcDNA=J033024P15,001-121-F02;Expression=AK121513;TENOR=Os01t0847100-01;KEGG=Os01t0847100-01
Chr01	irgsp1_rep	five_prime_UTR	36392080	36392151	.	+	.	Parent=Os01t0847100-01
Chr01	irgsp1_rep	CDS	36392152	36392412	.	+	0	Parent=Os01t0847100-01
Chr01	irgsp1_rep	three_prime_UTR	36392413	36392685	.	+	.	Parent=Os01t0847100-01
Chr01	irgsp1_rep	mRNA	36395486	36397969	.	+	.	ID=Os01t0847200-01;Name=Os01t0847200-01;Locus_id=Os01g0847200;CGSNL Gene Symbol=MPG1;CGSNL Gene Name=MANNOSE-1-PHOSPHATE GUANYL TRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=OsMPG1%2C OsVTC1-1%2C VTC1-1;Oryzabase Gene Name Synonym(s)=mannose-1-phosphate guanyl transferase 1;Note=Similar to Mannose-1-phosphate guanyltransferase (EC 2.7.7.13) (ATP-mannose-1- phosphate guanylyltransferase) (GDP-mannose pyrophosphorylase) (NDP- hexose pyrophosphorylase).;Transcript_evidence=AK122126 (DDBJ%2C Best hit);ORF_evidence=Q09PG3 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: transferase activity (GO:0016740),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=Bacterial transferase hexapeptide repeat (IPR001451),Nucleotidyl transferase (IPR005835),Hexapeptide transferase%2C conserved site (IPR018357);NIAS_FLcDNA=J033132D02;Oryzabase=11515;Expression=AK122126;TENOR=Os01t0847200-01;KEGG=Os01t0847200-01 (EC:2.7.7.13)
Chr01	irgsp1_rep	five_prime_UTR	36395486	36395713	.	+	.	Parent=Os01t0847200-01
Chr01	irgsp1_rep	five_prime_UTR	36395840	36395919	.	+	.	Parent=Os01t0847200-01
Chr01	irgsp1_rep	CDS	36395920	36396030	.	+	0	Parent=Os01t0847200-01
Chr01	irgsp1_rep	CDS	36396518	36396580	.	+	0	Parent=Os01t0847200-01
Chr01	irgsp1_rep	CDS	36396671	36396910	.	+	0	Parent=Os01t0847200-01
Chr01	irgsp1_rep	CDS	36396986	36397657	.	+	0	Parent=Os01t0847200-01
Chr01	irgsp1_rep	three_prime_UTR	36397658	36397969	.	+	.	Parent=Os01t0847200-01
Chr01	irgsp1_rep	mRNA	36395599	36398031	.	+	.	ID=Os01t0847200-02;Name=Os01t0847200-02;Locus_id=Os01g0847200;CGSNL Gene Symbol=MPG1;CGSNL Gene Name=MANNOSE-1-PHOSPHATE GUANYL TRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=OsMPG1%2C OsVTC1-1%2C VTC1-1;Oryzabase Gene Name Synonym(s)=mannose-1-phosphate guanyl transferase 1;Note=Similar to Mannose-1-phosphate guanyltransferase (EC 2.7.7.13) (ATP-mannose-1- phosphate guanylyltransferase) (GDP-mannose pyrophosphorylase) (NDP- hexose pyrophosphorylase).;Transcript_evidence=AK061976 (DDBJ%2C Best hit),AK064779 (DDBJ%2C Best hit);ORF_evidence=Q09PG3 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: transferase activity (GO:0016740),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=Bacterial transferase hexapeptide repeat (IPR001451),Nucleotidyl transferase (IPR005835),Hexapeptide transferase%2C conserved site (IPR018357);NIAS_FLcDNA=001-043-A03,J013000B04;Oryzabase=11515;TENOR=Os01t0847200-02
Chr01	irgsp1_rep	five_prime_UTR	36395599	36395713	.	+	.	Parent=Os01t0847200-02
Chr01	irgsp1_rep	five_prime_UTR	36395840	36395919	.	+	.	Parent=Os01t0847200-02
Chr01	irgsp1_rep	CDS	36395920	36396030	.	+	0	Parent=Os01t0847200-02
Chr01	irgsp1_rep	CDS	36396518	36396580	.	+	0	Parent=Os01t0847200-02
Chr01	irgsp1_rep	CDS	36396671	36396910	.	+	0	Parent=Os01t0847200-02
Chr01	irgsp1_rep	CDS	36396986	36397657	.	+	0	Parent=Os01t0847200-02
Chr01	irgsp1_rep	three_prime_UTR	36397658	36398031	.	+	.	Parent=Os01t0847200-02
Chr01	irgsp1_rep	mRNA	36395917	36397667	.	-	.	ID=Os01t0847250-00;Name=Os01t0847250-00;Locus_id=Os01g0847250;Note=Non-protein coding transcript.;Transcript_evidence=tplb0049h19 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os01t0847250-00
Chr01	irgsp1_rep	exon	36396992	36397667	.	-	.	Parent=Os01t0847250-00
Chr01	irgsp1_rep	exon	36396638	36396917	.	-	.	Parent=Os01t0847250-00
Chr01	irgsp1_rep	exon	36395917	36396074	.	-	.	Parent=Os01t0847250-00
Chr01	irgsp1_rep	mRNA	36398984	36401707	.	-	.	ID=Os01t0847300-01;Name=Os01t0847300-01;Locus_id=Os01g0847300;CGSNL Gene Symbol=CASPL5B1;CGSNL Gene Name=CASP-LIKE PROTEIN 5B1;Oryzabase Gene Symbol Synonym(s)=OsCASPL5B1;Oryzabase Gene Name Synonym(s)=CASP-like protein 5B1%2C CASPARIAN STRIP MEMBRANE DOMAIN PROTEIN-like protein 5B1;Note=Uncharacterised protein family UPF0497%2C trans-membrane plant domain containing protein.;Transcript_evidence=AK071164 (DDBJ%2C Best hit);ORF_evidence=B8AC36 (UniProt);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);NIAS_FLcDNA=J023081P19;Oryzabase=22453;Expression=AK071164;TENOR=Os01t0847300-01;KEGG=Os01t0847300-01
Chr01	irgsp1_rep	five_prime_UTR	36401565	36401707	.	-	.	Parent=Os01t0847300-01
Chr01	irgsp1_rep	CDS	36401434	36401564	.	-	0	Parent=Os01t0847300-01
Chr01	irgsp1_rep	CDS	36400180	36400312	.	-	1	Parent=Os01t0847300-01
Chr01	irgsp1_rep	CDS	36399141	36399338	.	-	0	Parent=Os01t0847300-01
Chr01	irgsp1_rep	three_prime_UTR	36398984	36399140	.	-	.	Parent=Os01t0847300-01
Chr01	irgsp1_rep	mRNA	36399037	36401679	.	-	.	ID=Os01t0847300-02;Name=Os01t0847300-02;Locus_id=Os01g0847300;CGSNL Gene Symbol=CASPL5B1;CGSNL Gene Name=CASP-LIKE PROTEIN 5B1;Oryzabase Gene Symbol Synonym(s)=OsCASPL5B1;Oryzabase Gene Name Synonym(s)=CASP-like protein 5B1%2C CASPARIAN STRIP MEMBRANE DOMAIN PROTEIN-like protein 5B1;Note=Uncharacterised protein family UPF0497%2C trans-membrane plant domain containing protein.;Transcript_evidence=AK104027 (DDBJ%2C Best hit);ORF_evidence=B8AC36 (UniProt);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);NIAS_FLcDNA=001-020-A04;Oryzabase=22453;Expression=AK104027;TENOR=Os01t0847300-02;KEGG=Os01t0847300-02
Chr01	irgsp1_rep	five_prime_UTR	36401565	36401679	.	-	.	Parent=Os01t0847300-02
Chr01	irgsp1_rep	CDS	36401434	36401564	.	-	0	Parent=Os01t0847300-02
Chr01	irgsp1_rep	CDS	36400180	36400312	.	-	1	Parent=Os01t0847300-02
Chr01	irgsp1_rep	CDS	36399141	36399338	.	-	0	Parent=Os01t0847300-02
Chr01	irgsp1_rep	three_prime_UTR	36399037	36399140	.	-	.	Parent=Os01t0847300-02
Chr01	irgsp1_rep	mRNA	36403442	36407379	.	+	.	ID=Os01t0847600-01;Name=Os01t0847600-01;Locus_id=Os01g0847600;RAP-DB Gene Symbol Synonym(s)=ARK1%2C OsAKR1;RAP-DB Gene Name Synonym(s)=ALDO-KETO REDUCTASE 1%2C Aldo-keto reductase 1;CGSNL Gene Symbol=ARK1;CGSNL Gene Name=ALDO-KETO REDUCTASE 1;Oryzabase Gene Symbol Synonym(s)=OsARK1;Oryzabase Gene Name Synonym(s)=Aldo-Keto reductase 1;Note=Aldo-keto reductase%2C Detoxification of abiotic stress-related reactive aldehydes%2C Oxidative and heat stress tolerance%2C Herbicide resistance;Transcript_evidence=AK242899;ORF_evidence=Q941T8;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldo/keto reductase (IPR020471),NADP-dependent oxidoreductase domain (IPR023210),Aldo/keto reductase%2C conserved site (IPR018170);NIAS_FLcDNA=J090081K17;Manual Curation=May 2%2C 2017;Literature_PMID=27611904,21246257;Oryzabase=9026;TENOR=Os01t0847600-01;KEGG=Os01t0847600-01
Chr01	irgsp1_rep	five_prime_UTR	36403442	36403644	.	+	.	Parent=Os01t0847600-01
Chr01	irgsp1_rep	CDS	36403645	36403755	.	+	0	Parent=Os01t0847600-01
Chr01	irgsp1_rep	CDS	36403882	36403932	.	+	0	Parent=Os01t0847600-01
Chr01	irgsp1_rep	CDS	36404422	36404498	.	+	0	Parent=Os01t0847600-01
Chr01	irgsp1_rep	CDS	36404617	36404704	.	+	1	Parent=Os01t0847600-01
Chr01	irgsp1_rep	CDS	36405357	36405632	.	+	0	Parent=Os01t0847600-01
Chr01	irgsp1_rep	CDS	36405743	36405991	.	+	0	Parent=Os01t0847600-01
Chr01	irgsp1_rep	CDS	36407056	36407139	.	+	0	Parent=Os01t0847600-01
Chr01	irgsp1_rep	three_prime_UTR	36407140	36407379	.	+	.	Parent=Os01t0847600-01
Chr01	irgsp1_rep	mRNA	36410714	36414587	.	+	.	ID=Os01t0847700-01;Name=Os01t0847700-01;Locus_id=Os01g0847700;RAP-DB Gene Symbol Synonym(s)=AKR2%2C AKR4C14%2C OsAKR2;RAP-DB Gene Name Synonym(s)=ALDO-KETO REDUCTASE 2%2C Aldo-keto reductase 2;CGSNL Gene Symbol=AKR2;CGSNL Gene Name=ALDO-KETO REDUCTASE 2;Oryzabase Gene Symbol Synonym(s)=OsAKR2%2C AKR4C14;Note=Aldo-keto reductase%2C Detoxification of reactive aldehydes%2C Abiotic stress tolerance;Transcript_evidence=AK103729,GQ227709 (indica);ORF_evidence=Q941T6;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldo/keto reductase (IPR020471),NADP-dependent oxidoreductase domain (IPR023210),Aldo/keto reductase%2C conserved site (IPR018170);NIAS_FLcDNA=J033138E18;Manual Curation=May 2%2C 2017;Literature_PMID=22101802,21246257;Oryzabase=9028;Expression=AK103729;TENOR=Os01t0847700-01;KEGG=Os01t0847700-01
Chr01	irgsp1_rep	five_prime_UTR	36410714	36410985	.	+	.	Parent=Os01t0847700-01
Chr01	irgsp1_rep	CDS	36410986	36411096	.	+	0	Parent=Os01t0847700-01
Chr01	irgsp1_rep	CDS	36411208	36411258	.	+	0	Parent=Os01t0847700-01
Chr01	irgsp1_rep	CDS	36412045	36412121	.	+	0	Parent=Os01t0847700-01
Chr01	irgsp1_rep	CDS	36412240	36412327	.	+	1	Parent=Os01t0847700-01
Chr01	irgsp1_rep	CDS	36412851	36413126	.	+	0	Parent=Os01t0847700-01
Chr01	irgsp1_rep	CDS	36413246	36413494	.	+	0	Parent=Os01t0847700-01
Chr01	irgsp1_rep	CDS	36414299	36414382	.	+	0	Parent=Os01t0847700-01
Chr01	irgsp1_rep	three_prime_UTR	36414383	36414587	.	+	.	Parent=Os01t0847700-01
Chr01	irgsp1_rep	mRNA	36418161	36420029	.	+	.	ID=Os01t0847800-01;Name=Os01t0847800-01;Locus_id=Os01g0847800;CGSNL Gene Symbol=AKR3;CGSNL Gene Name=ALDO-KETO REDUCTASE 3;Oryzabase Gene Symbol Synonym(s)=OsAKR3%2C OsALR1%2C ALR1;Oryzabase Gene Name Synonym(s)=aldose reductase 1;Note=Similar to Aldose reductase (EC 1.1.1.21) (AR) (Aldehyde reductase) (20-alpha- hydroxysteroid dehydrogenase) (EC 1.1.1.149) (20-alpha-HSD).;Transcript_evidence=AK100718 (DDBJ%2C Best hit);ORF_evidence=C6KHU2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldo/keto reductase (IPR001395),Aldo/keto reductase%2C conserved site (IPR018170),NADP-dependent oxidoreductase domain (IPR023210);NIAS_FLcDNA=J023115O16;Oryzabase=9029;Expression=AK100718;TENOR=Os01t0847800-01;KEGG=Os01t0847800-01 (EC:1.1.1.21)
Chr01	irgsp1_rep	five_prime_UTR	36418161	36418276	.	+	.	Parent=Os01t0847800-01
Chr01	irgsp1_rep	CDS	36418277	36418387	.	+	0	Parent=Os01t0847800-01
Chr01	irgsp1_rep	CDS	36418479	36418529	.	+	0	Parent=Os01t0847800-01
Chr01	irgsp1_rep	CDS	36418639	36418722	.	+	0	Parent=Os01t0847800-01
Chr01	irgsp1_rep	three_prime_UTR	36418723	36418936	.	+	.	Parent=Os01t0847800-01
Chr01	irgsp1_rep	three_prime_UTR	36419030	36419302	.	+	.	Parent=Os01t0847800-01
Chr01	irgsp1_rep	three_prime_UTR	36419392	36419618	.	+	.	Parent=Os01t0847800-01
Chr01	irgsp1_rep	three_prime_UTR	36419866	36420029	.	+	.	Parent=Os01t0847800-01
Chr01	irgsp1_rep	mRNA	36418277	36419953	.	+	.	ID=Os01t0847800-02;Name=Os01t0847800-02;Locus_id=Os01g0847800;RAP-DB Gene Symbol Synonym(s)=AKR3%2C OsAKR3;RAP-DB Gene Name Synonym(s)=ALDO-KETO REDUCTASE 3%2C Aldo-keto reductase 3;CGSNL Gene Symbol=AKR3;CGSNL Gene Name=ALDO-KETO REDUCTASE 3;Oryzabase Gene Symbol Synonym(s)=OsAKR3%2C OsALR1%2C ALR1;Oryzabase Gene Name Synonym(s)=aldose reductase 1;Note=Aldo-keto reductase;Transcript_evidence=GQ219963 (indica);ORF_evidence=C6KHU2 (indica);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldo/keto reductase (IPR020471),NADP-dependent oxidoreductase domain (IPR023210),Aldo/keto reductase%2C conserved site (IPR018170);Manual Curation=May 2%2C 2017;Literature_PMID=22101802,21246257;Oryzabase=9029
Chr01	irgsp1_rep	CDS	36418277	36418387	.	+	0	Parent=Os01t0847800-02
Chr01	irgsp1_rep	CDS	36418479	36418529	.	+	0	Parent=Os01t0847800-02
Chr01	irgsp1_rep	CDS	36418639	36418715	.	+	0	Parent=Os01t0847800-02
Chr01	irgsp1_rep	CDS	36418849	36418936	.	+	1	Parent=Os01t0847800-02
Chr01	irgsp1_rep	CDS	36419030	36419302	.	+	0	Parent=Os01t0847800-02
Chr01	irgsp1_rep	CDS	36419392	36419622	.	+	0	Parent=Os01t0847800-02
Chr01	irgsp1_rep	CDS	36419870	36419953	.	+	0	Parent=Os01t0847800-02
Chr01	irgsp1_rep	mRNA	36420027	36422866	.	-	.	ID=Os01t0847900-01;Name=Os01t0847900-01;Locus_id=Os01g0847900;Note=Prenylated rab acceptor PRA1 family protein.;Transcript_evidence=AK059798 (DDBJ%2C Best hit);ORF_evidence=B4G0F8 (UniProt);InterPro=Prenylated rab acceptor PRA1 (IPR004895);NIAS_FLcDNA=006-204-F01;Expression=AK059798;TENOR=Os01t0847900-01;KEGG=Os01t0847900-01
Chr01	irgsp1_rep	five_prime_UTR	36422686	36422866	.	-	.	Parent=Os01t0847900-01
Chr01	irgsp1_rep	CDS	36422528	36422685	.	-	0	Parent=Os01t0847900-01
Chr01	irgsp1_rep	CDS	36421784	36421824	.	-	1	Parent=Os01t0847900-01
Chr01	irgsp1_rep	CDS	36421606	36421684	.	-	2	Parent=Os01t0847900-01
Chr01	irgsp1_rep	CDS	36421034	36421120	.	-	1	Parent=Os01t0847900-01
Chr01	irgsp1_rep	CDS	36420852	36420940	.	-	1	Parent=Os01t0847900-01
Chr01	irgsp1_rep	CDS	36420665	36420736	.	-	2	Parent=Os01t0847900-01
Chr01	irgsp1_rep	CDS	36420488	36420591	.	-	2	Parent=Os01t0847900-01
Chr01	irgsp1_rep	three_prime_UTR	36420466	36420487	.	-	.	Parent=Os01t0847900-01
Chr01	irgsp1_rep	three_prime_UTR	36420027	36420389	.	-	.	Parent=Os01t0847900-01
Chr01	irgsp1_rep	mRNA	36420027	36422784	.	-	.	ID=Os01t0847900-02;Name=Os01t0847900-02;Locus_id=Os01g0847900;Note=Prenylated rab acceptor PRA1 family protein.;Transcript_evidence=AK073643 (DDBJ%2C Best hit);ORF_evidence=B4G0F8 (UniProt);InterPro=Prenylated rab acceptor PRA1 (IPR004895);NIAS_FLcDNA=J033053O06;Expression=AK073643;TENOR=Os01t0847900-02;KEGG=Os01t0847900-02
Chr01	irgsp1_rep	five_prime_UTR	36422686	36422784	.	-	.	Parent=Os01t0847900-02
Chr01	irgsp1_rep	CDS	36422528	36422685	.	-	0	Parent=Os01t0847900-02
Chr01	irgsp1_rep	CDS	36421784	36421824	.	-	1	Parent=Os01t0847900-02
Chr01	irgsp1_rep	CDS	36421606	36421684	.	-	2	Parent=Os01t0847900-02
Chr01	irgsp1_rep	CDS	36421034	36421120	.	-	1	Parent=Os01t0847900-02
Chr01	irgsp1_rep	CDS	36420852	36420940	.	-	1	Parent=Os01t0847900-02
Chr01	irgsp1_rep	CDS	36420665	36420736	.	-	2	Parent=Os01t0847900-02
Chr01	irgsp1_rep	CDS	36420488	36420591	.	-	2	Parent=Os01t0847900-02
Chr01	irgsp1_rep	three_prime_UTR	36420027	36420487	.	-	.	Parent=Os01t0847900-02
Chr01	irgsp1_rep	mRNA	36430978	36440140	.	+	.	ID=Os01t0848200-01;Name=Os01t0848200-01;Locus_id=Os01g0848200;Oryzabase Gene Symbol Synonym(s)=P5CS2%2C OsP5CS2%2C OsALDH18B2%2C ALDH18B2;Oryzabase Gene Name Synonym(s)=pyrroline-5-carboxylate synthetase 2%2C proline carboxylate synthase 2%2C Aldehyde dehydrogenase 18B2;Note=Similar to Delta 1-pyrroline-5-carboxylate synthetase (P5CS) [Includes: Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase) (GK)%3B Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41) (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase)].;Transcript_evidence=AK101230 (DDBJ%2C Best hit);ORF_evidence=B6SKV1 (UniProt);GO=Biological Process: proline biosynthetic process (GO:0006561),Biological Process: metabolic process (GO:0008152),Biological Process: cellular amino acid biosynthetic process (GO:0008652),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: cytoplasm (GO:0005737),Molecular Function: catalytic activity (GO:0003824),Molecular Function: glutamate 5-kinase activity (GO:0004349),Molecular Function: glutamate-5-semialdehyde dehydrogenase activity (GO:0004350),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620);InterPro=Gamma-glutamyl phosphate reductase GPR (IPR000965),Aspartate/glutamate/uridylate kinase (IPR001048),Glutamate/acetylglutamate kinase (IPR001057),Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase (IPR005715),Delta l-pyrroline-5-carboxylate synthetase (IPR005766),Aldehyde dehydrogenase domain (IPR015590),Aldehyde/histidinol dehydrogenase (IPR016161),Aldehyde dehydrogenase%2C N-terminal (IPR016162),Aldehyde dehydrogenase%2C C-terminal (IPR016163),Glutamate 5-kinase%2C conserved site (IPR019797),Gamma-glutamyl phosphate reductase GPR%2C conserved site (IPR020593);NIAS_FLcDNA=J033031H21;Oryzabase=11447;Expression=AK101230;TENOR=Os01t0848200-01;KEGG=Os01t0848200-01 (EC:1.2.1.41%2C EC:2.7.2.11)
Chr01	irgsp1_rep	five_prime_UTR	36430978	36431166	.	+	.	Parent=Os01t0848200-01
Chr01	irgsp1_rep	CDS	36431167	36431283	.	+	0	Parent=Os01t0848200-01
Chr01	irgsp1_rep	CDS	36431953	36432024	.	+	0	Parent=Os01t0848200-01
Chr01	irgsp1_rep	CDS	36432124	36432227	.	+	0	Parent=Os01t0848200-01
Chr01	irgsp1_rep	CDS	36432308	36432410	.	+	1	Parent=Os01t0848200-01
Chr01	irgsp1_rep	CDS	36432498	36432659	.	+	0	Parent=Os01t0848200-01
Chr01	irgsp1_rep	CDS	36432784	36433061	.	+	0	Parent=Os01t0848200-01
Chr01	irgsp1_rep	CDS	36436169	36436319	.	+	1	Parent=Os01t0848200-01
Chr01	irgsp1_rep	CDS	36436536	36436700	.	+	0	Parent=Os01t0848200-01
Chr01	irgsp1_rep	CDS	36436818	36436895	.	+	0	Parent=Os01t0848200-01
Chr01	irgsp1_rep	CDS	36437025	36437114	.	+	0	Parent=Os01t0848200-01
Chr01	irgsp1_rep	CDS	36437201	36437287	.	+	0	Parent=Os01t0848200-01
Chr01	irgsp1_rep	CDS	36437377	36437463	.	+	0	Parent=Os01t0848200-01
Chr01	irgsp1_rep	CDS	36437535	36437631	.	+	0	Parent=Os01t0848200-01
Chr01	irgsp1_rep	CDS	36437774	36437877	.	+	2	Parent=Os01t0848200-01
Chr01	irgsp1_rep	CDS	36438176	36438251	.	+	0	Parent=Os01t0848200-01
Chr01	irgsp1_rep	CDS	36438695	36438845	.	+	2	Parent=Os01t0848200-01
Chr01	irgsp1_rep	CDS	36438987	36439055	.	+	1	Parent=Os01t0848200-01
Chr01	irgsp1_rep	CDS	36439149	36439215	.	+	1	Parent=Os01t0848200-01
Chr01	irgsp1_rep	CDS	36439366	36439436	.	+	0	Parent=Os01t0848200-01
Chr01	irgsp1_rep	CDS	36439650	36439728	.	+	1	Parent=Os01t0848200-01
Chr01	irgsp1_rep	three_prime_UTR	36439729	36439729	.	+	.	Parent=Os01t0848200-01
Chr01	irgsp1_rep	three_prime_UTR	36439801	36440140	.	+	.	Parent=Os01t0848200-01
Chr01	irgsp1_rep	mRNA	36431034	36440843	.	+	.	ID=Os01t0848200-02;Name=Os01t0848200-02;Locus_id=Os01g0848200;Oryzabase Gene Symbol Synonym(s)=P5CS2%2C OsP5CS2%2C OsALDH18B2%2C ALDH18B2;Oryzabase Gene Name Synonym(s)=pyrroline-5-carboxylate synthetase 2%2C proline carboxylate synthase 2%2C Aldehyde dehydrogenase 18B2;Note=Similar to Delta 1-pyrroline-5-carboxylate synthetase (P5CS) [Includes: Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase) (GK)%3B Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41) (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase)].;Transcript_evidence=AK069425 (DDBJ%2C Best hit);ORF_evidence=B6SKV1 (UniProt);GO=Biological Process: proline biosynthetic process (GO:0006561),Biological Process: metabolic process (GO:0008152),Biological Process: cellular amino acid biosynthetic process (GO:0008652),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: cytoplasm (GO:0005737),Molecular Function: catalytic activity (GO:0003824),Molecular Function: glutamate 5-kinase activity (GO:0004349),Molecular Function: glutamate-5-semialdehyde dehydrogenase activity (GO:0004350),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620);InterPro=Gamma-glutamyl phosphate reductase GPR (IPR000965),Aspartate/glutamate/uridylate kinase (IPR001048),Glutamate/acetylglutamate kinase (IPR001057),Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase (IPR005715),Delta l-pyrroline-5-carboxylate synthetase (IPR005766),Aldehyde dehydrogenase domain (IPR015590),Aldehyde/histidinol dehydrogenase (IPR016161),Aldehyde dehydrogenase%2C N-terminal (IPR016162),Aldehyde dehydrogenase%2C C-terminal (IPR016163),Glutamate 5-kinase%2C conserved site (IPR019797),Gamma-glutamyl phosphate reductase GPR%2C conserved site (IPR020593);NIAS_FLcDNA=J023019K03;Oryzabase=11447;Expression=AK069425;TENOR=Os01t0848200-02;KEGG=Os01t0848200-02 (EC:1.2.1.41%2C EC:2.7.2.11)
Chr01	irgsp1_rep	five_prime_UTR	36431034	36431166	.	+	.	Parent=Os01t0848200-02
Chr01	irgsp1_rep	CDS	36431167	36431283	.	+	0	Parent=Os01t0848200-02
Chr01	irgsp1_rep	CDS	36431953	36432024	.	+	0	Parent=Os01t0848200-02
Chr01	irgsp1_rep	CDS	36432124	36432227	.	+	0	Parent=Os01t0848200-02
Chr01	irgsp1_rep	CDS	36432308	36432410	.	+	1	Parent=Os01t0848200-02
Chr01	irgsp1_rep	CDS	36432498	36432659	.	+	0	Parent=Os01t0848200-02
Chr01	irgsp1_rep	CDS	36432784	36433061	.	+	0	Parent=Os01t0848200-02
Chr01	irgsp1_rep	CDS	36436169	36436319	.	+	1	Parent=Os01t0848200-02
Chr01	irgsp1_rep	CDS	36436536	36436700	.	+	0	Parent=Os01t0848200-02
Chr01	irgsp1_rep	CDS	36436818	36436895	.	+	0	Parent=Os01t0848200-02
Chr01	irgsp1_rep	CDS	36437025	36437114	.	+	0	Parent=Os01t0848200-02
Chr01	irgsp1_rep	CDS	36437201	36437287	.	+	0	Parent=Os01t0848200-02
Chr01	irgsp1_rep	CDS	36437377	36437463	.	+	0	Parent=Os01t0848200-02
Chr01	irgsp1_rep	CDS	36437535	36437631	.	+	0	Parent=Os01t0848200-02
Chr01	irgsp1_rep	CDS	36437774	36437877	.	+	2	Parent=Os01t0848200-02
Chr01	irgsp1_rep	CDS	36438176	36438251	.	+	0	Parent=Os01t0848200-02
Chr01	irgsp1_rep	CDS	36438695	36438845	.	+	2	Parent=Os01t0848200-02
Chr01	irgsp1_rep	CDS	36438987	36439055	.	+	1	Parent=Os01t0848200-02
Chr01	irgsp1_rep	CDS	36439149	36439215	.	+	1	Parent=Os01t0848200-02
Chr01	irgsp1_rep	CDS	36439366	36439436	.	+	0	Parent=Os01t0848200-02
Chr01	irgsp1_rep	CDS	36439650	36439728	.	+	1	Parent=Os01t0848200-02
Chr01	irgsp1_rep	three_prime_UTR	36439729	36439729	.	+	.	Parent=Os01t0848200-02
Chr01	irgsp1_rep	three_prime_UTR	36439801	36440843	.	+	.	Parent=Os01t0848200-02
Chr01	irgsp1_rep	mRNA	36431758	36434280	.	-	.	ID=Os01t0848250-01;Name=Os01t0848250-01;Locus_id=Os01g0848250;Note=Non-protein coding transcript.;Transcript_evidence=AK064210 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-104-E10;TENOR=Os01t0848250-01
Chr01	irgsp1_rep	exon	36431758	36434280	.	-	.	Parent=Os01t0848250-01
Chr01	irgsp1_rep	mRNA	36438950	36442944	.	-	.	ID=Os01t0848300-01;Name=Os01t0848300-01;Locus_id=Os01g0848300;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK120668 (DDBJ%2C Best hit);ORF_evidence=Q2HSF0 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013160C21;Expression=AK120668;TENOR=Os01t0848300-01;KEGG=Os01t0848300-01
Chr01	irgsp1_rep	five_prime_UTR	36442822	36442944	.	-	.	Parent=Os01t0848300-01
Chr01	irgsp1_rep	CDS	36440839	36442821	.	-	0	Parent=Os01t0848300-01
Chr01	irgsp1_rep	three_prime_UTR	36440165	36440838	.	-	.	Parent=Os01t0848300-01
Chr01	irgsp1_rep	three_prime_UTR	36438950	36439879	.	-	.	Parent=Os01t0848300-01
Chr01	irgsp1_rep	mRNA	36445456	36449951	.	-	.	ID=Os01t0848400-01;Name=Os01t0848400-01;Locus_id=Os01g0848400;RAP-DB Gene Symbol Synonym(s)=RIL1%2C qSH1%2C qsh1%2C qSH-1;RAP-DB Gene Name Synonym(s)=RI-LIKE1%2C Shattering (QTL)-1%2C QTL of seed shattering in Chromosome 1;CGSNL Gene Symbol=qSH1;CGSNL Gene Name=Shattering (QTL)-1;Oryzabase Gene Symbol Synonym(s)=qSH1%2C qsh1%2C qSH-1%2C RIL1%2C OsRIL1;Oryzabase Gene Name Synonym(s)=QTL of seed shattering in Chromosome 1%2C RI-LIKE1%2C erticillate rachis-like 1;Note=BEL1-type homeobox family%2C Paralog of RI%2C Seed shattering%2C Initiation and maintenance of the shoot apical meristem during embryogenesis%2C Construction of inflorescence architecture;Transcript_evidence=AB071330 (Genbank),AB071331 (Genbank);ORF_evidence=Q8RUM5 (UniProt),Q941S9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeodomain (IPR001356),POX (IPR006563),Homeobox KN domain (IPR008422),Homeodomain-like (IPR009057);NIAS_FLcDNA=006-201-C01;Manual Curation=May 10%2C 2019;Literature_PMID=30657229,16614172;Oryzabase=6374;Expression=AK060936;TENOR=Os01t0848400-01;KEGG=Os01t0848400-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	36449503	36449951	.	-	.	Parent=Os01t0848400-01
Chr01	irgsp1_rep	CDS	36448696	36449502	.	-	0	Parent=Os01t0848400-01
Chr01	irgsp1_rep	CDS	36447492	36447871	.	-	0	Parent=Os01t0848400-01
Chr01	irgsp1_rep	CDS	36446308	36446368	.	-	1	Parent=Os01t0848400-01
Chr01	irgsp1_rep	CDS	36445610	36446200	.	-	0	Parent=Os01t0848400-01
Chr01	irgsp1_rep	three_prime_UTR	36445456	36445609	.	-	.	Parent=Os01t0848400-01
Chr01	irgsp1_rep	mRNA	36445402	36449427	.	+	.	ID=Os01t0848475-00;Name=Os01t0848475-00;Locus_id=Os01g0848475;Note=Hypothetical protein.;Transcript_evidence=tplb0024p20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0848475-00
Chr01	irgsp1_rep	five_prime_UTR	36445402	36446191	.	+	.	Parent=Os01t0848475-00
Chr01	irgsp1_rep	five_prime_UTR	36446295	36446359	.	+	.	Parent=Os01t0848475-00
Chr01	irgsp1_rep	five_prime_UTR	36447485	36447856	.	+	.	Parent=Os01t0848475-00
Chr01	irgsp1_rep	five_prime_UTR	36448682	36448809	.	+	.	Parent=Os01t0848475-00
Chr01	irgsp1_rep	CDS	36448810	36449142	.	+	0	Parent=Os01t0848475-00
Chr01	irgsp1_rep	three_prime_UTR	36449143	36449427	.	+	.	Parent=Os01t0848475-00
Chr01	irgsp1_rep	mRNA	36466416	36467358	.	-	.	ID=Os01t0848550-01;Name=Os01t0848550-01;Locus_id=Os01g0848550;Note=Conserved hypothetical protein.;Transcript_evidence=AK241086 (DDBJ%2C Best hit);ORF_evidence=NP_001172653.1 (RefSeq);NIAS_FLcDNA=J065073P06;TENOR=Os01t0848550-01;KEGG=Os01t0848550-01
Chr01	irgsp1_rep	five_prime_UTR	36467291	36467358	.	-	.	Parent=Os01t0848550-01
Chr01	irgsp1_rep	CDS	36466676	36467290	.	-	0	Parent=Os01t0848550-01
Chr01	irgsp1_rep	three_prime_UTR	36466416	36466675	.	-	.	Parent=Os01t0848550-01
Chr01	irgsp1_rep	mRNA	36467919	36470441	.	-	.	ID=Os01t0848700-01;Name=Os01t0848700-01;Locus_id=Os01g0848700;Oryzabase Gene Symbol Synonym(s)=OsSTA36;Note=Similar to Ras-related protein Rab11C.;Transcript_evidence=AK071303 (DDBJ%2C Best hit);ORF_evidence=B6SHY2 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: intracellular protein transport (GO:0006886),Biological Process: nucleocytoplasmic transport (GO:0006913),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Cellular Component: membrane (GO:0016020),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Ran GTPase (IPR002041),Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C Ras type (IPR020849),Small GTPase superfamily%2C ARF type (IPR024156);NIAS_FLcDNA=J023087L18;Oryzabase=19343;Expression=AK071303;TENOR=Os01t0848700-01;KEGG=Os01t0848700-01
Chr01	irgsp1_rep	five_prime_UTR	36470261	36470441	.	-	.	Parent=Os01t0848700-01
Chr01	irgsp1_rep	CDS	36470096	36470260	.	-	0	Parent=Os01t0848700-01
Chr01	irgsp1_rep	CDS	36468217	36468702	.	-	0	Parent=Os01t0848700-01
Chr01	irgsp1_rep	three_prime_UTR	36467919	36468216	.	-	.	Parent=Os01t0848700-01
Chr01	irgsp1_rep	mRNA	36466723	36470258	.	+	.	ID=Os01t0848766-00;Name=Os01t0848766-00;Locus_id=Os01g0848766;Note=Hypothetical gene.;Transcript_evidence=tplb0047b20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0848766-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	36466723	36467212	.	+	.	Parent=Os01t0848766-00
Chr01	irgsp1_rep	five_prime_UTR	36468255	36468528	.	+	.	Parent=Os01t0848766-00
Chr01	irgsp1_rep	CDS	36468529	36468704	.	+	0	Parent=Os01t0848766-00
Chr01	irgsp1_rep	CDS	36470102	36470231	.	+	1	Parent=Os01t0848766-00
Chr01	irgsp1_rep	three_prime_UTR	36470232	36470258	.	+	.	Parent=Os01t0848766-00
Chr01	irgsp1_rep	mRNA	36480510	36483990	.	+	.	ID=Os01t0848900-01;Name=Os01t0848900-01;Locus_id=Os01g0848900;Note=Conserved hypothetical protein.;Transcript_evidence=AK065438 (DDBJ%2C Best hit);ORF_evidence=A2WX01 (UniProt);NIAS_FLcDNA=J013025A05;Expression=AK065438;TENOR=Os01t0848900-01;KEGG=Os01t0848900-01
Chr01	irgsp1_rep	five_prime_UTR	36480510	36480884	.	+	.	Parent=Os01t0848900-01
Chr01	irgsp1_rep	CDS	36480885	36481037	.	+	0	Parent=Os01t0848900-01
Chr01	irgsp1_rep	CDS	36481527	36481599	.	+	0	Parent=Os01t0848900-01
Chr01	irgsp1_rep	CDS	36482050	36482222	.	+	2	Parent=Os01t0848900-01
Chr01	irgsp1_rep	CDS	36482354	36482408	.	+	0	Parent=Os01t0848900-01
Chr01	irgsp1_rep	CDS	36482491	36482507	.	+	2	Parent=Os01t0848900-01
Chr01	irgsp1_rep	three_prime_UTR	36482508	36482540	.	+	.	Parent=Os01t0848900-01
Chr01	irgsp1_rep	three_prime_UTR	36483575	36483990	.	+	.	Parent=Os01t0848900-01
Chr01	irgsp1_rep	mRNA	36484020	36484818	.	-	.	ID=Os01t0849000-02;Name=Os01t0849000-02;Locus_id=Os01g0849000;Oryzabase Gene Symbol Synonym(s)=OsLTPd5%2C LTPd5;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein d5%2C lipid transfer protein d5%2C type D non-specific lipid transfer protein 5;Note=Hypothetical protein.;Transcript_evidence=AK105208 (DDBJ%2C Best hit),AK062916 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=001-108-H09,001-108-H02;Oryzabase=13546;TENOR=Os01t0849000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	36484404	36484818	.	-	0	Parent=Os01t0849000-02
Chr01	irgsp1_rep	CDS	36484290	36484306	.	-	2	Parent=Os01t0849000-02
Chr01	irgsp1_rep	three_prime_UTR	36484020	36484289	.	-	.	Parent=Os01t0849000-02
Chr01	irgsp1_rep	mRNA	36484387	36484539	.	+	.	ID=Os01t0849050-00;Name=Os01t0849050-00;Locus_id=Os01g0849050;Note=Non-protein coding transcript.;Transcript_evidence=DQ185898 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0849050-00
Chr01	irgsp1_rep	exon	36484387	36484539	.	+	.	Parent=Os01t0849050-00
Chr01	irgsp1_rep	mRNA	36485437	36489944	.	-	.	ID=Os01t0849100-01;Name=Os01t0849100-01;Locus_id=Os01g0849100;RAP-DB Gene Symbol Synonym(s)=OsRacGEF1%2C RacGEF1;RAP-DB Gene Name Synonym(s)=small GTPase Rac/ROP guanine nucleotide exchange factor 1;CGSNL Gene Symbol=ROPGEF5;CGSNL Gene Name=ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 5;Oryzabase Gene Symbol Synonym(s)=OsRacGEF1%2C RacGEF1%2C OsRopGEF5%2C Os RopGEF5%2C RopGEF5%2C OsRopGEF7B%2C RopGEF7B;Oryzabase Gene Name Synonym(s)=small GTPase Rac/ROP guanine nucleotide exchange factor 1%2C GEF for ROP 5%2C guanine nucleotide exchange factor for Rop 5%2C Rop-specific GEF5%2C Rop-specific guanine nucleotide exchange factor 5%2C Guanine Nucleotide Exchange Factor 7B;Note=Small GTPase Rac/ROP guanine nucleotide exchange factor%2C Signal transduction;Transcript_evidence=NM_001051343;ORF_evidence=Q5N780;GO=Molecular Function: Rho guanyl-nucleotide exchange factor activity (GO:0005089);InterPro=PRONE domain (IPR005512);Manual Curation=March 8%2C 2016;Literature_PMID=26251883;Oryzabase=20005;TENOR=Os01t0849100-00
Chr01	irgsp1_rep	five_prime_UTR	36489718	36489944	.	-	.	Parent=Os01t0849100-01
Chr01	irgsp1_rep	CDS	36489498	36489717	.	-	0	Parent=Os01t0849100-01
Chr01	irgsp1_rep	CDS	36489290	36489406	.	-	2	Parent=Os01t0849100-01
Chr01	irgsp1_rep	CDS	36489033	36489187	.	-	2	Parent=Os01t0849100-01
Chr01	irgsp1_rep	CDS	36486934	36487008	.	-	0	Parent=Os01t0849100-01
Chr01	irgsp1_rep	CDS	36486561	36486851	.	-	0	Parent=Os01t0849100-01
Chr01	irgsp1_rep	CDS	36486110	36486469	.	-	0	Parent=Os01t0849100-01
Chr01	irgsp1_rep	CDS	36485585	36486007	.	-	0	Parent=Os01t0849100-01
Chr01	irgsp1_rep	three_prime_UTR	36485437	36485584	.	-	.	Parent=Os01t0849100-01
Chr01	irgsp1_rep	mRNA	36496069	36496656	.	+	.	ID=Os01t0849500-01;Name=Os01t0849500-01;Locus_id=Os01g0849500;Note=Protein of unknown function DUF3339 domain containing protein.;Transcript_evidence=AK111020 (DDBJ%2C Best hit);ORF_evidence=B8AC50 (UniProt);InterPro=Protein of unknown function DUF3339 (IPR021775);NIAS_FLcDNA=002-174-G09;Expression=AK111020;TENOR=Os01t0849500-01;KEGG=Os01t0849500-01
Chr01	irgsp1_rep	five_prime_UTR	36496069	36496135	.	+	.	Parent=Os01t0849500-01
Chr01	irgsp1_rep	CDS	36496136	36496342	.	+	0	Parent=Os01t0849500-01
Chr01	irgsp1_rep	three_prime_UTR	36496343	36496656	.	+	.	Parent=Os01t0849500-01
Chr01	irgsp1_rep	mRNA	36496934	36498132	.	-	.	ID=Os01t0849600-01;Name=Os01t0849600-01;Locus_id=Os01g0849600;Note=Similar to ENOD18 protein (Fragment).;Transcript_evidence=AK108159 (DDBJ%2C Best hit);ORF_evidence=B6TYX3 (UniProt);GO=Biological Process: response to stress (GO:0006950);InterPro=Universal stress protein A (IPR006015),UspA (IPR006016),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=002-139-G10;Expression=AK108159;TENOR=Os01t0849600-01;KEGG=Os01t0849600-01
Chr01	irgsp1_rep	five_prime_UTR	36498046	36498132	.	-	.	Parent=Os01t0849600-01
Chr01	irgsp1_rep	CDS	36497862	36498045	.	-	0	Parent=Os01t0849600-01
Chr01	irgsp1_rep	CDS	36497623	36497732	.	-	2	Parent=Os01t0849600-01
Chr01	irgsp1_rep	CDS	36497412	36497530	.	-	0	Parent=Os01t0849600-01
Chr01	irgsp1_rep	CDS	36497157	36497232	.	-	1	Parent=Os01t0849600-01
Chr01	irgsp1_rep	three_prime_UTR	36496934	36497156	.	-	.	Parent=Os01t0849600-01
Chr01	irgsp1_rep	mRNA	36527939	36529713	.	-	.	ID=Os01t0849950-00;Name=Os01t0849950-00;Locus_id=Os01g0849950;Note=Hypothetical protein.;Transcript_evidence=tplb0058g01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0849950-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	36529395	36529713	.	-	.	Parent=Os01t0849950-00
Chr01	irgsp1_rep	five_prime_UTR	36529242	36529310	.	-	.	Parent=Os01t0849950-00
Chr01	irgsp1_rep	five_prime_UTR	36529091	36529142	.	-	.	Parent=Os01t0849950-00
Chr01	irgsp1_rep	CDS	36528849	36529090	.	-	0	Parent=Os01t0849950-00
Chr01	irgsp1_rep	CDS	36528398	36528757	.	-	1	Parent=Os01t0849950-00
Chr01	irgsp1_rep	CDS	36527939	36528304	.	-	1	Parent=Os01t0849950-00
Chr01	irgsp1_rep	mRNA	36528042	36529841	.	+	.	ID=Os01t0850000-01;Name=Os01t0850000-01;Locus_id=Os01g0850000;Note=Uncharacterised conserved protein UCP022260 domain containing protein.;Transcript_evidence=AK105943 (DDBJ%2C Best hit);ORF_evidence=A2WX05 (UniProt);InterPro=Uncharacterised conserved protein UCP022260 (IPR016802);NIAS_FLcDNA=001-205-C02;Expression=AK105943;TENOR=Os01t0850000-01;KEGG=Os01t0850000-01
Chr01	irgsp1_rep	five_prime_UTR	36528042	36528102	.	+	.	Parent=Os01t0850000-01
Chr01	irgsp1_rep	CDS	36528103	36528306	.	+	0	Parent=Os01t0850000-01
Chr01	irgsp1_rep	CDS	36528400	36528750	.	+	0	Parent=Os01t0850000-01
Chr01	irgsp1_rep	CDS	36528843	36529134	.	+	0	Parent=Os01t0850000-01
Chr01	irgsp1_rep	CDS	36529232	36529339	.	+	2	Parent=Os01t0850000-01
Chr01	irgsp1_rep	CDS	36529426	36529562	.	+	2	Parent=Os01t0850000-01
Chr01	irgsp1_rep	three_prime_UTR	36529563	36529841	.	+	.	Parent=Os01t0850000-01
Chr01	irgsp1_rep	mRNA	36531401	36532340	.	+	.	ID=Os01t0850050-00;Name=Os01t0850050-00;Locus_id=Os01g0850050;Note=Hypothetical gene.;Transcript_evidence=CT837487 (DDBJ%2C Secondary hit);ORF_evidence=GeneMark;TENOR=Os01t0850050-00;KEGG=Os01t0850050-00
Chr01	irgsp1_rep	five_prime_UTR	36531401	36531402	.	+	.	Parent=Os01t0850050-00
Chr01	irgsp1_rep	CDS	36531403	36531612	.	+	0	Parent=Os01t0850050-00
Chr01	irgsp1_rep	three_prime_UTR	36531613	36532340	.	+	.	Parent=Os01t0850050-00
Chr01	irgsp1_rep	mRNA	36540164	36545196	.	+	.	ID=Os01t0850100-01;Name=Os01t0850100-01;Locus_id=Os01g0850100;Note=Similar to Phosphatidic acid phosphatase-like protein.;Transcript_evidence=AK071523 (DDBJ%2C Best hit),AK099114 (DDBJ%2C Best hit);ORF_evidence=E5FY32 (UniProt);NIAS_FLcDNA=J023100N13,J023037L23;TENOR=Os01t0850100-01
Chr01	irgsp1_rep	five_prime_UTR	36540164	36540535	.	+	.	Parent=Os01t0850100-01
Chr01	irgsp1_rep	CDS	36540536	36540568	.	+	0	Parent=Os01t0850100-01
Chr01	irgsp1_rep	CDS	36540645	36540734	.	+	0	Parent=Os01t0850100-01
Chr01	irgsp1_rep	CDS	36542336	36542422	.	+	0	Parent=Os01t0850100-01
Chr01	irgsp1_rep	CDS	36542516	36542584	.	+	0	Parent=Os01t0850100-01
Chr01	irgsp1_rep	CDS	36543213	36543293	.	+	0	Parent=Os01t0850100-01
Chr01	irgsp1_rep	CDS	36543382	36543453	.	+	0	Parent=Os01t0850100-01
Chr01	irgsp1_rep	CDS	36543555	36543615	.	+	0	Parent=Os01t0850100-01
Chr01	irgsp1_rep	CDS	36543701	36543803	.	+	2	Parent=Os01t0850100-01
Chr01	irgsp1_rep	CDS	36543964	36544059	.	+	1	Parent=Os01t0850100-01
Chr01	irgsp1_rep	CDS	36544135	36544181	.	+	1	Parent=Os01t0850100-01
Chr01	irgsp1_rep	CDS	36544264	36544424	.	+	2	Parent=Os01t0850100-01
Chr01	irgsp1_rep	CDS	36544662	36544742	.	+	0	Parent=Os01t0850100-01
Chr01	irgsp1_rep	three_prime_UTR	36544743	36545196	.	+	.	Parent=Os01t0850100-01
Chr01	irgsp1_rep	mRNA	36597719	36600524	.	-	.	ID=Os01t0850200-00;Name=Os01t0850200-00;Locus_id=Os01g0850200;Oryzabase Gene Symbol Synonym(s)=OsRFPV-3;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPV-3%2C RING-V protein 3;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=tplb0010d16 (Wheat FLcDNA);ORF_evidence=B6TD58 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-CH-type (IPR011016),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);Oryzabase=11802;TENOR=Os01t0850200-00;KEGG=Os01t0850200-00
Chr01	irgsp1_rep	five_prime_UTR	36600160	36600524	.	-	.	Parent=Os01t0850200-00
Chr01	irgsp1_rep	five_prime_UTR	36600012	36600029	.	-	.	Parent=Os01t0850200-00
Chr01	irgsp1_rep	CDS	36599491	36600011	.	-	0	Parent=Os01t0850200-00
Chr01	irgsp1_rep	CDS	36597774	36597996	.	-	1	Parent=Os01t0850200-00
Chr01	irgsp1_rep	three_prime_UTR	36597719	36597773	.	-	.	Parent=Os01t0850200-00
Chr01	irgsp1_rep	mRNA	36606535	36608135	.	-	.	ID=Os01t0850400-01;Name=Os01t0850400-01;Locus_id=Os01g0850400;Oryzabase Gene Symbol Synonym(s)=R2R3-MYB;Oryzabase Gene Name Synonym(s)=MYB domain protein;Note=Similar to MYBY1 protein (Fragment).;Transcript_evidence=AK108582 (DDBJ%2C Best hit);ORF_evidence=Q70KU5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=002-146-A03;Oryzabase=15976;Expression=AK108582;TENOR=Os01t0850400-01;KEGG=Os01t0850400-01
Chr01	irgsp1_rep	five_prime_UTR	36608094	36608135	.	-	.	Parent=Os01t0850400-01
Chr01	irgsp1_rep	CDS	36607592	36608093	.	-	0	Parent=Os01t0850400-01
Chr01	irgsp1_rep	CDS	36606645	36607384	.	-	2	Parent=Os01t0850400-01
Chr01	irgsp1_rep	three_prime_UTR	36606535	36606644	.	-	.	Parent=Os01t0850400-01
Chr01	irgsp1_rep	mRNA	36617104	36621116	.	+	.	ID=Os01t0850550-00;Name=Os01t0850550-00;Locus_id=Os01g0850550;CGSNL Gene Symbol=LAC7;CGSNL Gene Name=LACCASE 7;Oryzabase Gene Symbol Synonym(s)=OsLAC7;Oryzabase Gene Name Synonym(s)=laccase 7;Note=Similar to Laccase-6.;Transcript_evidence=AK367576 (DDBJ);ORF_evidence=Q5N7A3 (UniProt);GO=Biological Process: lignin catabolic process (GO:0046274),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: apoplast (GO:0048046),Molecular Function: copper ion binding (GO:0005507),Molecular Function: laccase activity (GO:0008471),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Multicopper oxidase%2C type 1 (IPR001117),Multicopper oxidase%2C copper-binding site (IPR002355),Cupredoxin (IPR008972),Multicopper oxidase%2C type 2 (IPR011706),Multicopper oxidase%2C type 3 (IPR011707),Laccase (IPR017761);Oryzabase=21614;TENOR=Os01t0850550-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	36617104	36617130	.	+	.	Parent=Os01t0850550-00
Chr01	irgsp1_rep	CDS	36617131	36617220	.	+	0	Parent=Os01t0850550-00
Chr01	irgsp1_rep	CDS	36618647	36618804	.	+	0	Parent=Os01t0850550-00
Chr01	irgsp1_rep	CDS	36618885	36619264	.	+	1	Parent=Os01t0850550-00
Chr01	irgsp1_rep	CDS	36619341	36620324	.	+	2	Parent=Os01t0850550-00
Chr01	irgsp1_rep	CDS	36620969	36621099	.	+	2	Parent=Os01t0850550-00
Chr01	irgsp1_rep	three_prime_UTR	36621100	36621116	.	+	.	Parent=Os01t0850550-00
Chr01	irgsp1_rep	mRNA	36622829	36627629	.	+	.	ID=Os01t0850700-01;Name=Os01t0850700-01;Locus_id=Os01g0850700;CGSNL Gene Symbol=LAC8;CGSNL Gene Name=LACCASE 8;Oryzabase Gene Symbol Synonym(s)=OsLAC8%2C OsLAC7%2C LAC7;Oryzabase Gene Name Synonym(s)=laccase 8;Note=Similar to Laccase-7.;Transcript_evidence=AK061816 (DDBJ%2C Best hit);ORF_evidence=Q5N7B4 (UniProt);GO=Biological Process: lignin catabolic process (GO:0046274),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: apoplast (GO:0048046),Molecular Function: copper ion binding (GO:0005507),Molecular Function: laccase activity (GO:0008471),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Multicopper oxidase%2C type 1 (IPR001117),Cupredoxin (IPR008972),Multicopper oxidase%2C type 3 (IPR011707),Laccase (IPR017761);NIAS_FLcDNA=001-040-B06;Oryzabase=18565;Expression=AK061816;TENOR=Os01t0850700-01;KEGG=Os01t0850700-01
Chr01	irgsp1_rep	five_prime_UTR	36622829	36622899	.	+	.	Parent=Os01t0850700-01
Chr01	irgsp1_rep	CDS	36622900	36623007	.	+	0	Parent=Os01t0850700-01
Chr01	irgsp1_rep	CDS	36623336	36623487	.	+	0	Parent=Os01t0850700-01
Chr01	irgsp1_rep	CDS	36625633	36625877	.	+	1	Parent=Os01t0850700-01
Chr01	irgsp1_rep	CDS	36625967	36626089	.	+	2	Parent=Os01t0850700-01
Chr01	irgsp1_rep	CDS	36626233	36627127	.	+	2	Parent=Os01t0850700-01
Chr01	irgsp1_rep	CDS	36627247	36627274	.	+	1	Parent=Os01t0850700-01
Chr01	irgsp1_rep	three_prime_UTR	36627275	36627629	.	+	.	Parent=Os01t0850700-01
Chr01	irgsp1_rep	mRNA	36622832	36627662	.	+	.	ID=Os01t0850700-02;Name=Os01t0850700-02;Locus_id=Os01g0850700;CGSNL Gene Symbol=LAC8;CGSNL Gene Name=LACCASE 8;Oryzabase Gene Symbol Synonym(s)=OsLAC8%2C OsLAC7%2C LAC7;Oryzabase Gene Name Synonym(s)=laccase 8;Note=Cupredoxin domain containing protein.;Transcript_evidence=AK109431 (DDBJ%2C Best hit),AK065154 (DDBJ%2C Best hit);ORF_evidence=Q5N7B4 (UniProt);GO=Biological Process: lignin catabolic process (GO:0046274),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: apoplast (GO:0048046),Molecular Function: copper ion binding (GO:0005507),Molecular Function: laccase activity (GO:0008471),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Multicopper oxidase%2C type 1 (IPR001117),Multicopper oxidase%2C copper-binding site (IPR002355),Cupredoxin (IPR008972),Multicopper oxidase%2C type 2 (IPR011706),Multicopper oxidase%2C type 3 (IPR011707),Laccase (IPR017761);NIAS_FLcDNA=006-308-A04,J013002B17;Oryzabase=18565;TENOR=Os01t0850700-02
Chr01	irgsp1_rep	five_prime_UTR	36622832	36622899	.	+	.	Parent=Os01t0850700-02
Chr01	irgsp1_rep	CDS	36622900	36623007	.	+	0	Parent=Os01t0850700-02
Chr01	irgsp1_rep	CDS	36623336	36623487	.	+	0	Parent=Os01t0850700-02
Chr01	irgsp1_rep	CDS	36625633	36625877	.	+	1	Parent=Os01t0850700-02
Chr01	irgsp1_rep	CDS	36625967	36626089	.	+	2	Parent=Os01t0850700-02
Chr01	irgsp1_rep	CDS	36626207	36627127	.	+	2	Parent=Os01t0850700-02
Chr01	irgsp1_rep	CDS	36627247	36627377	.	+	2	Parent=Os01t0850700-02
Chr01	irgsp1_rep	three_prime_UTR	36627378	36627662	.	+	.	Parent=Os01t0850700-02
Chr01	irgsp1_rep	mRNA	36634331	36636717	.	+	.	ID=Os01t0850800-00;Name=Os01t0850800-00;Locus_id=Os01g0850800;CGSNL Gene Symbol=LAC9;CGSNL Gene Name=LACCASE 9;Oryzabase Gene Symbol Synonym(s)=OsLAC9;Oryzabase Gene Name Synonym(s)=laccase 9;Note=Laccase-8.;Transcript_evidence=Q0JHP8 (UniProt);ORF_evidence=Q0JHP8 (UniProt);GO=Biological Process: lignin catabolic process (GO:0046274),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: apoplast (GO:0048046),Molecular Function: copper ion binding (GO:0005507),Molecular Function: laccase activity (GO:0008471),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Multicopper oxidase%2C type 1 (IPR001117),Multicopper oxidase%2C copper-binding site (IPR002355),Cupredoxin (IPR008972),Multicopper oxidase%2C type 2 (IPR011706),Multicopper oxidase%2C type 3 (IPR011707),Laccase (IPR017761);Oryzabase=18564;TENOR=Os01t0850800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	36634331	36634417	.	+	0	Parent=Os01t0850800-00
Chr01	irgsp1_rep	CDS	36634610	36634761	.	+	0	Parent=Os01t0850800-00
Chr01	irgsp1_rep	CDS	36634965	36635212	.	+	1	Parent=Os01t0850800-00
Chr01	irgsp1_rep	CDS	36635326	36635448	.	+	2	Parent=Os01t0850800-00
Chr01	irgsp1_rep	CDS	36635538	36636458	.	+	2	Parent=Os01t0850800-00
Chr01	irgsp1_rep	CDS	36636584	36636717	.	+	2	Parent=Os01t0850800-00
Chr01	irgsp1_rep	mRNA	36639626	36640552	.	+	.	ID=Os01t0850900-01;Name=Os01t0850900-01;Locus_id=Os01g0850900;Oryzabase Gene Name Synonym(s)=SOUL haem-binding protein domain protein;Note=SOUL haem-binding protein domain containing protein.;Transcript_evidence=AK102887 (DDBJ%2C Best hit),AK063822 (DDBJ%2C Best hit);ORF_evidence=D8L9H3 (UniProt);InterPro=SOUL haem-binding protein (IPR006917),Regulatory factor%2C effector%2C bacterial (IPR011256);NIAS_FLcDNA=J033112K22,001-122-A04;Oryzabase=23284;TENOR=Os01t0850900-01
Chr01	irgsp1_rep	five_prime_UTR	36639626	36639732	.	+	.	Parent=Os01t0850900-01
Chr01	irgsp1_rep	CDS	36639733	36640383	.	+	0	Parent=Os01t0850900-01
Chr01	irgsp1_rep	three_prime_UTR	36640384	36640552	.	+	.	Parent=Os01t0850900-01
Chr01	irgsp1_rep	mRNA	36640971	36647111	.	+	.	ID=Os01t0851000-01;Name=Os01t0851000-01;Locus_id=Os01g0851000;CGSNL Gene Symbol=WLP2;CGSNL Gene Name=WHITE LEAF AND PANICLE 2;Oryzabase Gene Symbol Synonym(s)=OsWLP2%2C OsFLN1%2C FLN1%2C HSA2;Oryzabase Gene Name Synonym(s)=White Leaf and Panicle 2%2C fructokinase-like 1;Note=Carbohydrate/purine kinase domain containing protein.;Transcript_evidence=AK287663 (DDBJ%2C Best hit);ORF_evidence=NP_001147575.1 (RefSeq);InterPro=Carbohydrate/purine kinase (IPR011611);NIAS_FLcDNA=J065113G07;Oryzabase=22147;TENOR=Os01t0851000-01;KEGG=Os01t0851000-01
Chr01	irgsp1_rep	five_prime_UTR	36640971	36640974	.	+	.	Parent=Os01t0851000-01
Chr01	irgsp1_rep	CDS	36640975	36641877	.	+	0	Parent=Os01t0851000-01
Chr01	irgsp1_rep	CDS	36642266	36642958	.	+	0	Parent=Os01t0851000-01
Chr01	irgsp1_rep	three_prime_UTR	36642959	36643084	.	+	.	Parent=Os01t0851000-01
Chr01	irgsp1_rep	three_prime_UTR	36646117	36646151	.	+	.	Parent=Os01t0851000-01
Chr01	irgsp1_rep	three_prime_UTR	36646588	36647111	.	+	.	Parent=Os01t0851000-01
Chr01	irgsp1_rep	mRNA	36640971	36643202	.	+	.	ID=Os01t0851000-02;Name=Os01t0851000-02;Locus_id=Os01g0851000;RAP-DB Gene Symbol Synonym(s)=WLP2%2C OsFLN1;RAP-DB Gene Name Synonym(s)=White Leaf and Panicle 2%2C fructokinase-like protein 1;CGSNL Gene Symbol=WLP2;CGSNL Gene Name=WHITE LEAF AND PANICLE 2;Oryzabase Gene Symbol Synonym(s)=OsWLP2%2C OsFLN1%2C FLN1%2C HSA2;Oryzabase Gene Name Synonym(s)=White Leaf and Panicle 2%2C fructokinase-like 1;Note=Plastid-encoded RNA polymerase (PEP)-associated protein%2C Protection of chloroplast development from heat stress%2C Chloroplast biogenesis and plant growth;Transcript_evidence=AK065338;ORF_evidence=Q5N7A1;InterPro=Ribokinase-like (IPR029056),Carbohydrate kinase PfkB (IPR011611);NIAS_FLcDNA=J013000K08;Manual Curation=October 9%2C 2018;Literature_PMID=29319227,29045742;Oryzabase=22147;Expression=AK065338;TENOR=Os01t0851000-02;Subcellular location=chloroplast (GO:0009507)
Chr01	irgsp1_rep	five_prime_UTR	36640971	36640974	.	+	.	Parent=Os01t0851000-02
Chr01	irgsp1_rep	CDS	36640975	36641877	.	+	0	Parent=Os01t0851000-02
Chr01	irgsp1_rep	CDS	36642266	36642958	.	+	0	Parent=Os01t0851000-02
Chr01	irgsp1_rep	three_prime_UTR	36642959	36643202	.	+	.	Parent=Os01t0851000-02
Chr01	irgsp1_rep	mRNA	36643577	36648018	.	-	.	ID=Os01t0851100-01;Name=Os01t0851100-01;Locus_id=Os01g0851100;Note=GDP-fucose protein O-fucosyltransferase domain containing protein.;Transcript_evidence=AK100337 (DDBJ%2C Best hit);ORF_evidence=Q5N7B2 (UniProt);InterPro=GDP-fucose protein O-fucosyltransferase (IPR019378);NIAS_FLcDNA=J023081E01;TENOR=Os01t0851100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	36647683	36648018	.	-	.	Parent=Os01t0851100-01
Chr01	irgsp1_rep	CDS	36647233	36647682	.	-	0	Parent=Os01t0851100-01
Chr01	irgsp1_rep	CDS	36645857	36645926	.	-	0	Parent=Os01t0851100-01
Chr01	irgsp1_rep	CDS	36645700	36645770	.	-	2	Parent=Os01t0851100-01
Chr01	irgsp1_rep	CDS	36645513	36645601	.	-	0	Parent=Os01t0851100-01
Chr01	irgsp1_rep	CDS	36645202	36645418	.	-	1	Parent=Os01t0851100-01
Chr01	irgsp1_rep	three_prime_UTR	36644958	36645201	.	-	.	Parent=Os01t0851100-01
Chr01	irgsp1_rep	three_prime_UTR	36644384	36644860	.	-	.	Parent=Os01t0851100-01
Chr01	irgsp1_rep	three_prime_UTR	36643577	36644314	.	-	.	Parent=Os01t0851100-01
Chr01	irgsp1_rep	mRNA	36644619	36647697	.	-	.	ID=Os01t0851100-02;Name=Os01t0851100-02;Locus_id=Os01g0851100;Note=Similar to predicted protein.;Transcript_evidence=AK071217 (DDBJ%2C Best hit);ORF_evidence=Q9FH12 (UniProt);InterPro=GDP-fucose protein O-fucosyltransferase (IPR019378);NIAS_FLcDNA=J023085L22;TENOR=Os01t0851100-02
Chr01	irgsp1_rep	five_prime_UTR	36647683	36647697	.	-	.	Parent=Os01t0851100-02
Chr01	irgsp1_rep	CDS	36647233	36647682	.	-	0	Parent=Os01t0851100-02
Chr01	irgsp1_rep	CDS	36645857	36645926	.	-	0	Parent=Os01t0851100-02
Chr01	irgsp1_rep	CDS	36645700	36645770	.	-	2	Parent=Os01t0851100-02
Chr01	irgsp1_rep	CDS	36645513	36645601	.	-	0	Parent=Os01t0851100-02
Chr01	irgsp1_rep	CDS	36645286	36645418	.	-	1	Parent=Os01t0851100-02
Chr01	irgsp1_rep	CDS	36644958	36645187	.	-	0	Parent=Os01t0851100-02
Chr01	irgsp1_rep	CDS	36644619	36644860	.	-	1	Parent=Os01t0851100-02
Chr01	irgsp1_rep	mRNA	36652530	36654649	.	-	.	ID=Os01t0851300-01;Name=Os01t0851300-01;Locus_id=Os01g0851300;Note=Reticulon family protein.;Transcript_evidence=AK101770 (DDBJ%2C Best hit);ORF_evidence=A2WX19 (UniProt);GO=Cellular Component: endoplasmic reticulum (GO:0005783);InterPro=Reticulon (IPR003388);NIAS_FLcDNA=J033064I03;Expression=AK101770;TENOR=Os01t0851300-01;KEGG=Os01t0851300-01
Chr01	irgsp1_rep	five_prime_UTR	36654537	36654649	.	-	.	Parent=Os01t0851300-01
Chr01	irgsp1_rep	CDS	36654461	36654536	.	-	0	Parent=Os01t0851300-01
Chr01	irgsp1_rep	CDS	36654152	36654335	.	-	2	Parent=Os01t0851300-01
Chr01	irgsp1_rep	CDS	36653366	36653577	.	-	1	Parent=Os01t0851300-01
Chr01	irgsp1_rep	CDS	36652633	36652772	.	-	2	Parent=Os01t0851300-01
Chr01	irgsp1_rep	three_prime_UTR	36652530	36652632	.	-	.	Parent=Os01t0851300-01
Chr01	irgsp1_rep	mRNA	36656370	36660768	.	-	.	ID=Os01t0851400-01;Name=Os01t0851400-01;Locus_id=Os01g0851400;Note=Machado-Joseph disease protein MJD family protein.;Transcript_evidence=AK243063 (DDBJ%2C Best hit);ORF_evidence=B6THQ5 (UniProt);GO=Molecular Function: omega peptidase activity (GO:0008242);InterPro=Machado-Joseph disease protein MJD (IPR006155);NIAS_FLcDNA=J100015C16;TENOR=Os01t0851400-01;KEGG=Os01t0851400-01 (EC:3.4.22.-)
Chr01	irgsp1_rep	five_prime_UTR	36660678	36660768	.	-	.	Parent=Os01t0851400-01
Chr01	irgsp1_rep	CDS	36660405	36660677	.	-	0	Parent=Os01t0851400-01
Chr01	irgsp1_rep	CDS	36656755	36657492	.	-	0	Parent=Os01t0851400-01
Chr01	irgsp1_rep	three_prime_UTR	36656370	36656754	.	-	.	Parent=Os01t0851400-01
Chr01	irgsp1_rep	mRNA	36666965	36668075	.	+	.	ID=Os01t0851600-01;Name=Os01t0851600-01;Locus_id=Os01g0851600;Note=3-oxo-5-alpha-steroid 4-dehydrogenase%2C C-terminal domain containing protein.;Transcript_evidence=AK101345 (DDBJ%2C Best hit);ORF_evidence=Q53NE6 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: steroid metabolic process (GO:0008202),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: cytoplasm (GO:0005737),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: 3-oxo-5-alpha-steroid 4-dehydrogenase activity (GO:0003865),Molecular Function: oxidoreductase activity%2C acting on the CH-CH group of donors (GO:0016627);InterPro=3-oxo-5-alpha-steroid 4-dehydrogenase%2C C-terminal (IPR001104),3-oxo-5-alpha-steroid 4-dehydrogenase (IPR016636);NIAS_FLcDNA=J033034K18;Expression=AK101345;TENOR=Os01t0851600-01;KEGG=Os01t0851600-01 (EC:1.3.99.5)
Chr01	irgsp1_rep	five_prime_UTR	36666965	36667118	.	+	.	Parent=Os01t0851600-01
Chr01	irgsp1_rep	CDS	36667119	36667925	.	+	0	Parent=Os01t0851600-01
Chr01	irgsp1_rep	three_prime_UTR	36667926	36668075	.	+	.	Parent=Os01t0851600-01
Chr01	irgsp1_rep	mRNA	36670321	36676478	.	-	.	ID=Os01t0851700-01;Name=Os01t0851700-01;Locus_id=Os01g0851700;Oryzabase Gene Symbol Synonym(s)=Pho2%2C OsPho2;Oryzabase Gene Name Synonym(s)=Starch phosphorylase 2%2C plastidial starch phosphorylase2%2C plastidial starch phosphorylase 2;Note=Similar to Cytosolic starch phosphorylase (Fragment).;Transcript_evidence=AK103367 (DDBJ%2C Best hit),AK105410 (DDBJ%2C Best hit);ORF_evidence=B8ACF5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: phosphorylase activity (GO:0004645),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Glycosyl transferase%2C family 35 (IPR000811),Glycogen/starch/alpha-glucan phosphorylase (IPR011833);NIAS_FLcDNA=J033126P09,001-123-F09;Oryzabase=11813;TENOR=Os01t0851700-01
Chr01	irgsp1_rep	five_prime_UTR	36676365	36676478	.	-	.	Parent=Os01t0851700-01
Chr01	irgsp1_rep	CDS	36676164	36676364	.	-	0	Parent=Os01t0851700-01
Chr01	irgsp1_rep	CDS	36675882	36676061	.	-	0	Parent=Os01t0851700-01
Chr01	irgsp1_rep	CDS	36675412	36675588	.	-	0	Parent=Os01t0851700-01
Chr01	irgsp1_rep	CDS	36675241	36675326	.	-	0	Parent=Os01t0851700-01
Chr01	irgsp1_rep	CDS	36674560	36674749	.	-	1	Parent=Os01t0851700-01
Chr01	irgsp1_rep	CDS	36674004	36674096	.	-	0	Parent=Os01t0851700-01
Chr01	irgsp1_rep	CDS	36673411	36673595	.	-	0	Parent=Os01t0851700-01
Chr01	irgsp1_rep	CDS	36673147	36673264	.	-	1	Parent=Os01t0851700-01
Chr01	irgsp1_rep	CDS	36672932	36673063	.	-	0	Parent=Os01t0851700-01
Chr01	irgsp1_rep	CDS	36672506	36672724	.	-	0	Parent=Os01t0851700-01
Chr01	irgsp1_rep	CDS	36672217	36672420	.	-	0	Parent=Os01t0851700-01
Chr01	irgsp1_rep	CDS	36671956	36672114	.	-	0	Parent=Os01t0851700-01
Chr01	irgsp1_rep	CDS	36671487	36671750	.	-	0	Parent=Os01t0851700-01
Chr01	irgsp1_rep	CDS	36671094	36671284	.	-	0	Parent=Os01t0851700-01
Chr01	irgsp1_rep	CDS	36670600	36670726	.	-	1	Parent=Os01t0851700-01
Chr01	irgsp1_rep	three_prime_UTR	36670321	36670599	.	-	.	Parent=Os01t0851700-01
Chr01	irgsp1_rep	mRNA	36683927	36684766	.	+	.	ID=Os01t0852000-01;Name=Os01t0852000-01;Locus_id=Os01g0852000;Note=Hypothetical protein.;Transcript_evidence=AK064631 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-113-G07;Expression=AK064631;TENOR=Os01t0852000-01;KEGG=Os01t0852000-01
Chr01	irgsp1_rep	five_prime_UTR	36683927	36683934	.	+	.	Parent=Os01t0852000-01
Chr01	irgsp1_rep	CDS	36683935	36684387	.	+	0	Parent=Os01t0852000-01
Chr01	irgsp1_rep	three_prime_UTR	36684388	36684766	.	+	.	Parent=Os01t0852000-01
Chr01	irgsp1_rep	mRNA	36683837	36687072	.	-	.	ID=Os01t0852100-01;Name=Os01t0852100-01;Locus_id=Os01g0852100;CGSNL Gene Symbol=RLCK48;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 48;Oryzabase Gene Symbol Synonym(s)=OsRLCK48;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 48;Note=Conserved hypothetical protein.;Transcript_evidence=AK240986 (DDBJ%2C Best hit);ORF_evidence=B8ACF6 (UniProt);NIAS_FLcDNA=J065050M10;Oryzabase=18765;TENOR=Os01t0852100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	36687044	36687072	.	-	.	Parent=Os01t0852100-01
Chr01	irgsp1_rep	CDS	36686738	36687043	.	-	0	Parent=Os01t0852100-01
Chr01	irgsp1_rep	three_prime_UTR	36685988	36686737	.	-	.	Parent=Os01t0852100-01
Chr01	irgsp1_rep	three_prime_UTR	36685714	36685882	.	-	.	Parent=Os01t0852100-01
Chr01	irgsp1_rep	three_prime_UTR	36685176	36685265	.	-	.	Parent=Os01t0852100-01
Chr01	irgsp1_rep	three_prime_UTR	36684402	36684700	.	-	.	Parent=Os01t0852100-01
Chr01	irgsp1_rep	three_prime_UTR	36683837	36684315	.	-	.	Parent=Os01t0852100-01
Chr01	irgsp1_rep	mRNA	36687782	36695629	.	-	.	ID=Os01t0852200-01;Name=Os01t0852200-01;Locus_id=Os01g0852200;CGSNL Gene Symbol=PT22;CGSNL Gene Name=PHOSPHATE TRANSPORTER 22;Oryzabase Gene Symbol Synonym(s)=OsPT22;Oryzabase Gene Name Synonym(s)=phosphate transporter 22;Note=Similar to sialin.;Transcript_evidence=AK102621 (DDBJ%2C Best hit);ORF_evidence=NP_001147958.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J033099H12;Oryzabase=21400;TENOR=Os01t0852200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	36695629	36695629	.	-	.	Parent=Os01t0852200-01
Chr01	irgsp1_rep	CDS	36695485	36695628	.	-	0	Parent=Os01t0852200-01
Chr01	irgsp1_rep	CDS	36690184	36690410	.	-	0	Parent=Os01t0852200-01
Chr01	irgsp1_rep	CDS	36689709	36690072	.	-	1	Parent=Os01t0852200-01
Chr01	irgsp1_rep	CDS	36689562	36689606	.	-	0	Parent=Os01t0852200-01
Chr01	irgsp1_rep	CDS	36689319	36689465	.	-	0	Parent=Os01t0852200-01
Chr01	irgsp1_rep	CDS	36688758	36688895	.	-	0	Parent=Os01t0852200-01
Chr01	irgsp1_rep	CDS	36688616	36688649	.	-	0	Parent=Os01t0852200-01
Chr01	irgsp1_rep	CDS	36688346	36688530	.	-	2	Parent=Os01t0852200-01
Chr01	irgsp1_rep	three_prime_UTR	36687782	36688345	.	-	.	Parent=Os01t0852200-01
Chr01	irgsp1_rep	mRNA	36687545	36691370	.	-	.	ID=Os01t0852200-02;Name=Os01t0852200-02;Locus_id=Os01g0852200;CGSNL Gene Symbol=PT22;CGSNL Gene Name=PHOSPHATE TRANSPORTER 22;Oryzabase Gene Symbol Synonym(s)=OsPT22;Oryzabase Gene Name Synonym(s)=phosphate transporter 22;Note=Similar to sialin.;Transcript_evidence=AK072698 (DDBJ%2C Best hit);ORF_evidence=NP_001147958.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J023138J12;Oryzabase=21400;Expression=AK072698;TENOR=Os01t0852200-02;KEGG=Os01t0852200-02
Chr01	irgsp1_rep	five_prime_UTR	36691270	36691370	.	-	.	Parent=Os01t0852200-02
Chr01	irgsp1_rep	CDS	36690850	36691269	.	-	0	Parent=Os01t0852200-02
Chr01	irgsp1_rep	CDS	36690184	36690410	.	-	0	Parent=Os01t0852200-02
Chr01	irgsp1_rep	CDS	36689709	36690072	.	-	1	Parent=Os01t0852200-02
Chr01	irgsp1_rep	CDS	36689562	36689606	.	-	0	Parent=Os01t0852200-02
Chr01	irgsp1_rep	CDS	36689319	36689465	.	-	0	Parent=Os01t0852200-02
Chr01	irgsp1_rep	CDS	36688758	36688895	.	-	0	Parent=Os01t0852200-02
Chr01	irgsp1_rep	CDS	36688492	36688530	.	-	0	Parent=Os01t0852200-02
Chr01	irgsp1_rep	three_prime_UTR	36687545	36688491	.	-	.	Parent=Os01t0852200-02
Chr01	irgsp1_rep	mRNA	36687788	36691363	.	-	.	ID=Os01t0852200-03;Name=Os01t0852200-03;Locus_id=Os01g0852200;CGSNL Gene Symbol=PT22;CGSNL Gene Name=PHOSPHATE TRANSPORTER 22;Oryzabase Gene Symbol Synonym(s)=OsPT22;Oryzabase Gene Name Synonym(s)=phosphate transporter 22;Note=Major facilitator superfamily protein.;Transcript_evidence=AK063954 (DDBJ%2C Best hit);ORF_evidence=NP_001147958.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=001-123-F11;Oryzabase=21400;Expression=AK063954;TENOR=Os01t0852200-03;KEGG=Os01t0852200-03
Chr01	irgsp1_rep	five_prime_UTR	36691270	36691363	.	-	.	Parent=Os01t0852200-03
Chr01	irgsp1_rep	CDS	36690850	36691269	.	-	0	Parent=Os01t0852200-03
Chr01	irgsp1_rep	CDS	36690184	36690410	.	-	0	Parent=Os01t0852200-03
Chr01	irgsp1_rep	CDS	36689709	36690072	.	-	1	Parent=Os01t0852200-03
Chr01	irgsp1_rep	CDS	36689562	36689606	.	-	0	Parent=Os01t0852200-03
Chr01	irgsp1_rep	CDS	36689319	36689465	.	-	0	Parent=Os01t0852200-03
Chr01	irgsp1_rep	CDS	36688758	36688895	.	-	0	Parent=Os01t0852200-03
Chr01	irgsp1_rep	CDS	36688616	36688649	.	-	0	Parent=Os01t0852200-03
Chr01	irgsp1_rep	CDS	36688346	36688530	.	-	2	Parent=Os01t0852200-03
Chr01	irgsp1_rep	three_prime_UTR	36687788	36688345	.	-	.	Parent=Os01t0852200-03
Chr01	irgsp1_rep	mRNA	36696905	36698963	.	-	.	ID=Os01t0852400-00;Name=Os01t0852400-00;Locus_id=Os01g0852400;Note=Protein of unknown function DUF740 family protein.;Transcript_evidence=EU951209 (DDBJ);ORF_evidence=NP_001044827.1 (RefSeq);InterPro=Uncharacterised protein family UPF0503 (IPR008004);TENOR=Os01t0852400-00;KEGG=Os01t0852400-00
Chr01	irgsp1_rep	CDS	36697008	36698963	.	-	0	Parent=Os01t0852400-00
Chr01	irgsp1_rep	three_prime_UTR	36696905	36697007	.	-	.	Parent=Os01t0852400-00
Chr01	irgsp1_rep	mRNA	36718089	36723161	.	-	.	ID=Os01t0852500-01;Name=Os01t0852500-01;Locus_id=Os01g0852500;Note=ELM2 domain containing protein.;Transcript_evidence=AK069637 (DDBJ%2C Best hit);ORF_evidence=A2WX26 (UniProt);InterPro=ELM2 domain (IPR000949);NIAS_FLcDNA=J023026J02;Expression=AK069637;TENOR=Os01t0852500-01;KEGG=Os01t0852500-01
Chr01	irgsp1_rep	five_prime_UTR	36723026	36723161	.	-	.	Parent=Os01t0852500-01
Chr01	irgsp1_rep	CDS	36722576	36723025	.	-	0	Parent=Os01t0852500-01
Chr01	irgsp1_rep	CDS	36718703	36719427	.	-	0	Parent=Os01t0852500-01
Chr01	irgsp1_rep	CDS	36718479	36718515	.	-	1	Parent=Os01t0852500-01
Chr01	irgsp1_rep	three_prime_UTR	36718089	36718478	.	-	.	Parent=Os01t0852500-01
Chr01	irgsp1_rep	mRNA	36718064	36723110	.	-	.	ID=Os01t0852500-02;Name=Os01t0852500-02;Locus_id=Os01g0852500;Note=ELM2 domain containing protein.;Transcript_evidence=AK100453 (DDBJ%2C Best hit);ORF_evidence=A2WX26 (UniProt);InterPro=ELM2 domain (IPR000949);NIAS_FLcDNA=J023091D06;Expression=AK100453;TENOR=Os01t0852500-02;KEGG=Os01t0852500-02
Chr01	irgsp1_rep	five_prime_UTR	36723026	36723110	.	-	.	Parent=Os01t0852500-02
Chr01	irgsp1_rep	CDS	36722576	36723025	.	-	0	Parent=Os01t0852500-02
Chr01	irgsp1_rep	CDS	36718703	36719427	.	-	0	Parent=Os01t0852500-02
Chr01	irgsp1_rep	CDS	36718479	36718515	.	-	1	Parent=Os01t0852500-02
Chr01	irgsp1_rep	three_prime_UTR	36718064	36718478	.	-	.	Parent=Os01t0852500-02
Chr01	irgsp1_rep	mRNA	36727945	36729912	.	+	.	ID=Os01t0852650-00;Name=Os01t0852650-00;Locus_id=Os01g0852650;Note=FAR1 DNA binding domain domain containing protein.;Transcript_evidence=BT062235 (DDBJ);ORF_evidence=A3A002 (UniProt);InterPro=FAR1 DNA binding domain (IPR004330),MULE transposase domain (IPR018289);TENOR=Os01t0852650-00
Chr01	irgsp1_rep	CDS	36727945	36729348	.	+	0	Parent=Os01t0852650-00
Chr01	irgsp1_rep	three_prime_UTR	36729349	36729912	.	+	.	Parent=Os01t0852650-00
Chr01	irgsp1_rep	mRNA	36728482	36731085	.	-	.	ID=Os01t0852800-01;Name=Os01t0852800-01;Locus_id=Os01g0852800;Note=Conserved hypothetical protein.;Transcript_evidence=AK288119 (DDBJ%2C Best hit);ORF_evidence=NP_001172656.1 (RefSeq);NIAS_FLcDNA=J080051I03;TENOR=Os01t0852800-01;KEGG=Os01t0852800-01
Chr01	irgsp1_rep	five_prime_UTR	36731032	36731085	.	-	.	Parent=Os01t0852800-01
Chr01	irgsp1_rep	CDS	36730708	36731031	.	-	0	Parent=Os01t0852800-01
Chr01	irgsp1_rep	three_prime_UTR	36730672	36730707	.	-	.	Parent=Os01t0852800-01
Chr01	irgsp1_rep	three_prime_UTR	36728482	36728586	.	-	.	Parent=Os01t0852800-01
Chr01	irgsp1_rep	mRNA	36732836	36737403	.	+	.	ID=Os01t0852900-01;Name=Os01t0852900-01;Locus_id=Os01g0852900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK105423 (DDBJ%2C Best hit);ORF_evidence=A2WX28 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-124-C01;Expression=AK105423;TENOR=Os01t0852900-01;KEGG=Os01t0852900-01
Chr01	irgsp1_rep	five_prime_UTR	36732836	36732869	.	+	.	Parent=Os01t0852900-01
Chr01	irgsp1_rep	CDS	36732870	36734981	.	+	0	Parent=Os01t0852900-01
Chr01	irgsp1_rep	three_prime_UTR	36734982	36735000	.	+	.	Parent=Os01t0852900-01
Chr01	irgsp1_rep	three_prime_UTR	36736268	36736418	.	+	.	Parent=Os01t0852900-01
Chr01	irgsp1_rep	three_prime_UTR	36736529	36736718	.	+	.	Parent=Os01t0852900-01
Chr01	irgsp1_rep	three_prime_UTR	36736813	36737403	.	+	.	Parent=Os01t0852900-01
Chr01	irgsp1_rep	mRNA	36732966	36737390	.	+	.	ID=Os01t0852900-02;Name=Os01t0852900-02;Locus_id=Os01g0852900;Note=Hypothetical conserved gene.;Transcript_evidence=AK101805 (DDBJ%2C Best hit);ORF_evidence=A2WX28 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033066K09;Expression=AK101805;TENOR=Os01t0852900-02;KEGG=Os01t0852900-02
Chr01	irgsp1_rep	CDS	36732966	36734981	.	+	0	Parent=Os01t0852900-02
Chr01	irgsp1_rep	three_prime_UTR	36734982	36735000	.	+	.	Parent=Os01t0852900-02
Chr01	irgsp1_rep	three_prime_UTR	36736268	36736703	.	+	.	Parent=Os01t0852900-02
Chr01	irgsp1_rep	three_prime_UTR	36736813	36737390	.	+	.	Parent=Os01t0852900-02
Chr01	irgsp1_rep	mRNA	36736127	36737198	.	-	.	ID=Os01t0853000-01;Name=Os01t0853000-01;Locus_id=Os01g0853000;Note=Conserved hypothetical protein.;Transcript_evidence=AK099561 (DDBJ%2C Best hit);ORF_evidence=XP_002458778.1 (RefSeq);NIAS_FLcDNA=J013034J20;Expression=AK099561;TENOR=Os01t0853000-01;KEGG=Os01t0853000-01
Chr01	irgsp1_rep	five_prime_UTR	36737095	36737198	.	-	.	Parent=Os01t0853000-01
Chr01	irgsp1_rep	CDS	36736765	36737094	.	-	0	Parent=Os01t0853000-01
Chr01	irgsp1_rep	CDS	36736239	36736691	.	-	0	Parent=Os01t0853000-01
Chr01	irgsp1_rep	three_prime_UTR	36736127	36736238	.	-	.	Parent=Os01t0853000-01
Chr01	irgsp1_rep	mRNA	36747521	36750925	.	+	.	ID=Os01t0853400-01;Name=Os01t0853400-01;Locus_id=Os01g0853400;RAP-DB Gene Symbol Synonym(s)=OsCOI1a%2C OsCOI1%2C Os_F0728;RAP-DB Gene Name Synonym(s)=coronatine insensitive 1a%2C CORONATINE INSENSITIVE1;Oryzabase Gene Symbol Synonym(s)=OsCOI1a%2C OsCOI1%2C Os_F0728%2C COI1a%2C COI1%2C F0728;Oryzabase Gene Name Synonym(s)=coronatine insensitive 1a%2C CORONATINE INSENSITIVE1%2C coronatine insensitive 1;Note=Component of the SCF E3 ubiquitin ligase complex%2C Jasmonate-regulated defense responses%2C Promoting leaf senescence;Transcript_evidence=AK121543,AY168645;ORF_evidence=Q6Y9P5;GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain (IPR001810),Leucine-rich repeat%2C cysteine-containing subtype (IPR006553);NIAS_FLcDNA=J033032A10;Manual Curation=June 12%2C 2015;Literature_PMID=23320078,23104764,22558386;Oryzabase=10934;Expression=AK121543;TENOR=Os01t0853400-01;KEGG=Os01t0853400-01
Chr01	irgsp1_rep	five_prime_UTR	36747521	36747600	.	+	.	Parent=Os01t0853400-01
Chr01	irgsp1_rep	CDS	36747601	36748106	.	+	0	Parent=Os01t0853400-01
Chr01	irgsp1_rep	CDS	36749270	36749744	.	+	1	Parent=Os01t0853400-01
Chr01	irgsp1_rep	CDS	36749825	36750631	.	+	0	Parent=Os01t0853400-01
Chr01	irgsp1_rep	three_prime_UTR	36750632	36750925	.	+	.	Parent=Os01t0853400-01
Chr01	irgsp1_rep	mRNA	36756897	36759006	.	+	.	ID=Os01t0853600-01;Name=Os01t0853600-01;Locus_id=Os01g0853600;Oryzabase Gene Name Synonym(s)=Hypothetical conserved gene;Note=Similar to cDNA clone:J023041K02%2C full insert sequence.;Transcript_evidence=AK108628 (DDBJ%2C Best hit);ORF_evidence=B7F6K2 (UniProt);NIAS_FLcDNA=002-147-E10;Oryzabase=22019;TENOR=Os01t0853600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	36756897	36756943	.	+	.	Parent=Os01t0853600-01
Chr01	irgsp1_rep	CDS	36756944	36757420	.	+	0	Parent=Os01t0853600-01
Chr01	irgsp1_rep	CDS	36757853	36757873	.	+	0	Parent=Os01t0853600-01
Chr01	irgsp1_rep	three_prime_UTR	36757874	36758064	.	+	.	Parent=Os01t0853600-01
Chr01	irgsp1_rep	three_prime_UTR	36758232	36759006	.	+	.	Parent=Os01t0853600-01
Chr01	irgsp1_rep	mRNA	36756936	36762917	.	+	.	ID=Os01t0853600-02;Name=Os01t0853600-02;Locus_id=Os01g0853600;Oryzabase Gene Name Synonym(s)=Hypothetical conserved gene;Note=Similar to cDNA clone:002-147-E10%2C full insert sequence.;Transcript_evidence=AK120975 (DDBJ%2C Best hit);ORF_evidence=B7F1H3 (UniProt);NIAS_FLcDNA=J023041K02;Oryzabase=22019;TENOR=Os01t0853600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	36756936	36756943	.	+	.	Parent=Os01t0853600-02
Chr01	irgsp1_rep	CDS	36756944	36757459	.	+	0	Parent=Os01t0853600-02
Chr01	irgsp1_rep	three_prime_UTR	36757460	36758064	.	+	.	Parent=Os01t0853600-02
Chr01	irgsp1_rep	three_prime_UTR	36758227	36761175	.	+	.	Parent=Os01t0853600-02
Chr01	irgsp1_rep	three_prime_UTR	36761279	36761479	.	+	.	Parent=Os01t0853600-02
Chr01	irgsp1_rep	three_prime_UTR	36761739	36762917	.	+	.	Parent=Os01t0853600-02
Chr01	irgsp1_rep	mRNA	36757151	36757848	.	+	.	ID=Os01t0853600-03;Name=Os01t0853600-03;Locus_id=Os01g0853600;Oryzabase Gene Name Synonym(s)=Hypothetical conserved gene;Note=Similar to cDNA clone:J023041K02%2C full insert sequence.;Transcript_evidence=AK107747 (DDBJ%2C Best hit);ORF_evidence=B7F6K2 (UniProt);NIAS_FLcDNA=002-132-H05;Oryzabase=22019;Expression=AK107747;TENOR=Os01t0853600-03;KEGG=Os01t0853600-03
Chr01	irgsp1_rep	CDS	36757151	36757459	.	+	0	Parent=Os01t0853600-03
Chr01	irgsp1_rep	three_prime_UTR	36757460	36757848	.	+	.	Parent=Os01t0853600-03
Chr01	irgsp1_rep	mRNA	36763677	36765294	.	-	.	ID=Os01t0853700-01;Name=Os01t0853700-01;Locus_id=Os01g0853700;Note=Similar to MCB1 protein.;Transcript_evidence=AK111988 (DDBJ%2C Best hit);ORF_evidence=B7ZY89 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),MYB-like (IPR017877),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=001-030-C10;Expression=AK111988;TENOR=Os01t0853700-01;KEGG=Os01t0853700-01
Chr01	irgsp1_rep	five_prime_UTR	36765215	36765294	.	-	.	Parent=Os01t0853700-01
Chr01	irgsp1_rep	CDS	36764781	36765214	.	-	0	Parent=Os01t0853700-01
Chr01	irgsp1_rep	CDS	36764199	36764664	.	-	1	Parent=Os01t0853700-01
Chr01	irgsp1_rep	three_prime_UTR	36763677	36764198	.	-	.	Parent=Os01t0853700-01
Chr01	irgsp1_rep	mRNA	36771018	36772336	.	+	.	ID=Os01t0853800-01;Name=Os01t0853800-01;Locus_id=Os01g0853800;Note=C2 calcium-dependent membrane targeting domain containing protein.;Transcript_evidence=AK069147 (DDBJ%2C Best hit),AK106144 (DDBJ%2C Best hit),AK106186 (DDBJ%2C Best hit);ORF_evidence=A2WX33 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973);NIAS_FLcDNA=J023007P09,001-207-G12,001-208-D08;Expression=AK069147;TENOR=Os01t0853800-01;KEGG=Os01t0853800-01
Chr01	irgsp1_rep	five_prime_UTR	36771018	36771096	.	+	.	Parent=Os01t0853800-01
Chr01	irgsp1_rep	CDS	36771097	36772080	.	+	0	Parent=Os01t0853800-01
Chr01	irgsp1_rep	three_prime_UTR	36772081	36772336	.	+	.	Parent=Os01t0853800-01
Chr01	irgsp1_rep	mRNA	36771053	36772295	.	+	.	ID=Os01t0853800-04;Name=Os01t0853800-04;Locus_id=Os01g0853800;Note=C2 calcium-dependent membrane targeting domain containing protein.;Transcript_evidence=AK105929 (DDBJ%2C Best hit);ORF_evidence=A2WX33 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973);NIAS_FLcDNA=001-205-A12;Expression=AK105929;TENOR=Os01t0853800-04;KEGG=Os01t0853800-04
Chr01	irgsp1_rep	five_prime_UTR	36771053	36771096	.	+	.	Parent=Os01t0853800-04
Chr01	irgsp1_rep	CDS	36771097	36772080	.	+	0	Parent=Os01t0853800-04
Chr01	irgsp1_rep	three_prime_UTR	36772081	36772295	.	+	.	Parent=Os01t0853800-04
Chr01	irgsp1_rep	mRNA	36794890	36796983	.	+	.	ID=Os01t0854000-01;Name=Os01t0854000-01;Locus_id=Os01g0854000;Note=Similar to AER.;Transcript_evidence=AK070440 (DDBJ%2C Best hit);ORF_evidence=NP_001151798.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J023050J22;TENOR=Os01t0854000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	36794890	36795023	.	+	.	Parent=Os01t0854000-01
Chr01	irgsp1_rep	CDS	36795024	36796475	.	+	0	Parent=Os01t0854000-01
Chr01	irgsp1_rep	three_prime_UTR	36796476	36796983	.	+	.	Parent=Os01t0854000-01
Chr01	irgsp1_rep	mRNA	36808170	36808790	.	+	.	ID=Os01t0854400-01;Name=Os01t0854400-01;Locus_id=Os01g0854400;Note=Conserved hypothetical protein.;Transcript_evidence=AK108330 (DDBJ%2C Best hit);ORF_evidence=A2WX36 (UniProt);NIAS_FLcDNA=002-141-H12;Expression=AK108330;TENOR=Os01t0854400-01;KEGG=Os01t0854400-01
Chr01	irgsp1_rep	five_prime_UTR	36808170	36808213	.	+	.	Parent=Os01t0854400-01
Chr01	irgsp1_rep	CDS	36808214	36808630	.	+	0	Parent=Os01t0854400-01
Chr01	irgsp1_rep	three_prime_UTR	36808631	36808790	.	+	.	Parent=Os01t0854400-01
Chr01	irgsp1_rep	mRNA	36813736	36815023	.	-	.	ID=Os01t0854500-01;Name=Os01t0854500-01;Locus_id=Os01g0854500;CGSNL Gene Symbol=QHB;CGSNL Gene Name=QUIESCENT-CENTER-SPECIFIC-HOMEOBOX (QHB) GENE;Oryzabase Gene Symbol Synonym(s)=OsWOX9%2C WOX9%2C WOX5%2C Os WOX5%2C OsWOX5%2C QHB/OsWOX9;Oryzabase Gene Name Synonym(s)=quiescent-center-specific-homeobox (QHB) gene%2C WUSCHEL-related homeobox 9%2C Protein WOX5%2C Quiescent-specific homeobox protein;Note=Homeobox domain containing protein.;Transcript_evidence=AK102203 (DDBJ%2C Best hit);ORF_evidence=Q8W0F1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);NIAS_FLcDNA=J033087F22;Oryzabase=3118;Expression=AK102203;TENOR=Os01t0854500-01;KEGG=Os01t0854500-01
Chr01	irgsp1_rep	five_prime_UTR	36814792	36815023	.	-	.	Parent=Os01t0854500-01
Chr01	irgsp1_rep	CDS	36814413	36814791	.	-	0	Parent=Os01t0854500-01
Chr01	irgsp1_rep	CDS	36814080	36814303	.	-	2	Parent=Os01t0854500-01
Chr01	irgsp1_rep	three_prime_UTR	36813736	36814079	.	-	.	Parent=Os01t0854500-01
Chr01	irgsp1_rep	mRNA	36838524	36839070	.	-	.	ID=Os01t0854651-00;Name=Os01t0854651-00;Locus_id=Os01g0854651;Note=Similar to Adenylate cyclase.;Transcript_evidence=BT037955 (DDBJ);ORF_evidence=B6TSQ1 (UniProt);TENOR=Os01t0854651-00
Chr01	irgsp1_rep	five_prime_UTR	36838830	36839070	.	-	.	Parent=Os01t0854651-00
Chr01	irgsp1_rep	CDS	36838524	36838829	.	-	0	Parent=Os01t0854651-00
Chr01	irgsp1_rep	mRNA	36840077	36842114	.	+	.	ID=Os01t0854800-01;Name=Os01t0854800-01;Locus_id=Os01g0854800;CGSNL Gene Symbol=CYP86A7-2;CGSNL Gene Name=P-450 86A7-2;Oryzabase Gene Symbol Synonym(s)=CYP86A7-2%2C OsCYP86A7-2;Oryzabase Gene Name Synonym(s)=CytoChrome P450 86A7-2%2C fatty acid omega-hydroxylase;Note=Similar to CytoChrome P450 86A1 (EC 1.14.-.-) (CYPLXXXVI) (P450-dependent fatty acid omega-hydroxylase).;Transcript_evidence=AK109676 (DDBJ%2C Best hit);ORF_evidence=A2WX38 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=002-145-C01;Oryzabase=18137;Expression=AK109676;TENOR=Os01t0854800-01;KEGG=Os01t0854800-01
Chr01	irgsp1_rep	five_prime_UTR	36840077	36840196	.	+	.	Parent=Os01t0854800-01
Chr01	irgsp1_rep	CDS	36840197	36841834	.	+	0	Parent=Os01t0854800-01
Chr01	irgsp1_rep	three_prime_UTR	36841835	36842114	.	+	.	Parent=Os01t0854800-01
Chr01	irgsp1_rep	mRNA	36863177	36871094	.	-	.	ID=Os01t0855000-01;Name=Os01t0855000-01;Locus_id=Os01g0855000;Oryzabase Gene Symbol Synonym(s)=GPAT;Oryzabase Gene Name Synonym(s)=glycerol-3-phosphate acyltransferase;Note=Similar to Glycerol-3-phosphate acyltransferase 6 (EC 2.3.1.15) (AtGPAT6).;Transcript_evidence=AK070880 (DDBJ%2C Best hit);ORF_evidence=D8L9N9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Phospholipid/glycerol acyltransferase (IPR002123),HAD-like domain (IPR023214);NIAS_FLcDNA=J023064I03;Oryzabase=21987;Expression=AK070880;TENOR=Os01t0855000-01;KEGG=Os01t0855000-01 (EC:2.3.1.15)
Chr01	irgsp1_rep	five_prime_UTR	36870939	36871094	.	-	.	Parent=Os01t0855000-01
Chr01	irgsp1_rep	five_prime_UTR	36869570	36869641	.	-	.	Parent=Os01t0855000-01
Chr01	irgsp1_rep	five_prime_UTR	36868041	36868991	.	-	.	Parent=Os01t0855000-01
Chr01	irgsp1_rep	five_prime_UTR	36867865	36867941	.	-	.	Parent=Os01t0855000-01
Chr01	irgsp1_rep	five_prime_UTR	36866288	36866984	.	-	.	Parent=Os01t0855000-01
Chr01	irgsp1_rep	CDS	36865673	36866287	.	-	0	Parent=Os01t0855000-01
Chr01	irgsp1_rep	CDS	36863347	36864225	.	-	0	Parent=Os01t0855000-01
Chr01	irgsp1_rep	three_prime_UTR	36863177	36863346	.	-	.	Parent=Os01t0855000-01
Chr01	irgsp1_rep	mRNA	36867582	36870859	.	-	.	ID=Os01t0855000-02;Name=Os01t0855000-02;Locus_id=Os01g0855000;Oryzabase Gene Symbol Synonym(s)=GPAT;Oryzabase Gene Name Synonym(s)=glycerol-3-phosphate acyltransferase;Note=Hypothetical gene.;Transcript_evidence=AK073956 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033077D14;Oryzabase=21987;Expression=AK073956;TENOR=Os01t0855000-02;KEGG=Os01t0855000-02
Chr01	irgsp1_rep	five_prime_UTR	36868444	36870859	.	-	.	Parent=Os01t0855000-02
Chr01	irgsp1_rep	CDS	36868102	36868443	.	-	0	Parent=Os01t0855000-02
Chr01	irgsp1_rep	three_prime_UTR	36868041	36868101	.	-	.	Parent=Os01t0855000-02
Chr01	irgsp1_rep	three_prime_UTR	36867582	36867941	.	-	.	Parent=Os01t0855000-02
Chr01	irgsp1_rep	mRNA	36863214	36866375	.	-	.	ID=Os01t0855000-03;Name=Os01t0855000-03;Locus_id=Os01g0855000;Oryzabase Gene Symbol Synonym(s)=GPAT;Oryzabase Gene Name Synonym(s)=glycerol-3-phosphate acyltransferase;Note=Similar to Glycerol-3-phosphate acyltransferase 6 (EC 2.3.1.15) (AtGPAT6).;Transcript_evidence=AK105944 (DDBJ%2C Best hit);ORF_evidence=B6TCX0 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Phospholipid/glycerol acyltransferase (IPR002123),HAD-like domain (IPR023214);NIAS_FLcDNA=001-205-C03;Oryzabase=21987;Expression=AK105944;TENOR=Os01t0855000-03;KEGG=Os01t0855000-03 (EC:2.3.1.15)
Chr01	irgsp1_rep	five_prime_UTR	36866288	36866375	.	-	.	Parent=Os01t0855000-03
Chr01	irgsp1_rep	CDS	36865673	36866287	.	-	0	Parent=Os01t0855000-03
Chr01	irgsp1_rep	CDS	36863347	36864225	.	-	0	Parent=Os01t0855000-03
Chr01	irgsp1_rep	three_prime_UTR	36863214	36863346	.	-	.	Parent=Os01t0855000-03
Chr01	irgsp1_rep	mRNA	36894607	36897206	.	+	.	ID=Os01t0855200-01;Name=Os01t0855200-01;Locus_id=Os01g0855200;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK066597 (DDBJ%2C Best hit);ORF_evidence=B8ACG3 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026);NIAS_FLcDNA=J013069I22;Expression=AK066597;TENOR=Os01t0855200-01;KEGG=Os01t0855200-01
Chr01	irgsp1_rep	five_prime_UTR	36894607	36895005	.	+	.	Parent=Os01t0855200-01
Chr01	irgsp1_rep	CDS	36895006	36896318	.	+	0	Parent=Os01t0855200-01
Chr01	irgsp1_rep	CDS	36896424	36896649	.	+	1	Parent=Os01t0855200-01
Chr01	irgsp1_rep	three_prime_UTR	36896650	36897206	.	+	.	Parent=Os01t0855200-01
Chr01	irgsp1_rep	mRNA	36936986	36939375	.	+	.	ID=Os01t0855400-00;Name=Os01t0855400-00;Locus_id=Os01g0855400;CGSNL Gene Symbol=DLN29;CGSNL Gene Name=DLN REPRESSOR 29;Oryzabase Gene Symbol Synonym(s)=OsDLN29;Oryzabase Gene Name Synonym(s)=DLN repressor 29%2C DLN motif protein 29;Note=SANT domain%2C DNA binding domain containing protein.;Transcript_evidence=FJ940215 (DDBJ%2C Best hit);ORF_evidence=NP_001044841.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);Oryzabase=23160;TENOR=Os01t0855400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	36936986	36937048	.	+	.	Parent=Os01t0855400-00
Chr01	irgsp1_rep	CDS	36937049	36937422	.	+	0	Parent=Os01t0855400-00
Chr01	irgsp1_rep	CDS	36937510	36937636	.	+	1	Parent=Os01t0855400-00
Chr01	irgsp1_rep	CDS	36938256	36939101	.	+	0	Parent=Os01t0855400-00
Chr01	irgsp1_rep	three_prime_UTR	36939102	36939375	.	+	.	Parent=Os01t0855400-00
Chr01	irgsp1_rep	mRNA	36942716	36944585	.	-	.	ID=Os01t0855600-01;Name=Os01t0855600-01;Locus_id=Os01g0855600;Oryzabase Gene Symbol Synonym(s)=HS1;Oryzabase Gene Name Synonym(s)=putative nematode-resistance protein;Note=Similar to Hs1pro-1 protein.;Transcript_evidence=AK099776 (DDBJ%2C Best hit);ORF_evidence=Q9FUH4 (UniProt);InterPro=Hs1pro-1%2C C-terminal (IPR009743),Hs1pro-1%2C N-terminal (IPR009869);NIAS_FLcDNA=J013095E24;Oryzabase=16285;Expression=AK099776;TENOR=Os01t0855600-01;KEGG=Os01t0855600-01
Chr01	irgsp1_rep	five_prime_UTR	36944470	36944585	.	-	.	Parent=Os01t0855600-01
Chr01	irgsp1_rep	CDS	36943045	36944469	.	-	0	Parent=Os01t0855600-01
Chr01	irgsp1_rep	three_prime_UTR	36942716	36943044	.	-	.	Parent=Os01t0855600-01
Chr01	irgsp1_rep	mRNA	36943000	36945124	.	+	.	ID=Os01t0855700-01;Name=Os01t0855700-01;Locus_id=Os01g0855700;Note=Hypothetical protein.;Transcript_evidence=AK106740 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-115-B03;TENOR=Os01t0855700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	36943000	36943674	.	+	0	Parent=Os01t0855700-01
Chr01	irgsp1_rep	three_prime_UTR	36943675	36945124	.	+	.	Parent=Os01t0855700-01
Chr01	irgsp1_rep	mRNA	36951126	36951761	.	+	.	ID=Os01t0855900-01;Name=Os01t0855900-01;Locus_id=Os01g0855900;Note=Hypothetical gene.;Transcript_evidence=AK062976 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-109-E10;Expression=AK062976;TENOR=Os01t0855900-01;KEGG=Os01t0855900-01
Chr01	irgsp1_rep	CDS	36951126	36951383	.	+	0	Parent=Os01t0855900-01
Chr01	irgsp1_rep	three_prime_UTR	36951384	36951761	.	+	.	Parent=Os01t0855900-01
Chr01	irgsp1_rep	mRNA	36952073	36956727	.	+	.	ID=Os01t0856000-01;Name=Os01t0856000-01;Locus_id=Os01g0856000;CGSNL Gene Symbol=CDC6;CGSNL Gene Name=CELL DIVISION CONTROL 6;Oryzabase Gene Symbol Synonym(s)=OsCDC6;Note=Similar to CDC6 protein.;Transcript_evidence=AK107439 (DDBJ%2C Best hit);ORF_evidence=Q8W032 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),CDC6%2C C-terminal (IPR015163),Cell division protein Cdc6 (IPR016314);NIAS_FLcDNA=002-128-B03;Oryzabase=9203;Expression=AK107439;TENOR=Os01t0856000-01;KEGG=Os01t0856000-01
Chr01	irgsp1_rep	five_prime_UTR	36952073	36953138	.	+	.	Parent=Os01t0856000-01
Chr01	irgsp1_rep	CDS	36953139	36953263	.	+	0	Parent=Os01t0856000-01
Chr01	irgsp1_rep	CDS	36953342	36953567	.	+	1	Parent=Os01t0856000-01
Chr01	irgsp1_rep	CDS	36953648	36953722	.	+	0	Parent=Os01t0856000-01
Chr01	irgsp1_rep	CDS	36953798	36953904	.	+	0	Parent=Os01t0856000-01
Chr01	irgsp1_rep	CDS	36954005	36954111	.	+	1	Parent=Os01t0856000-01
Chr01	irgsp1_rep	CDS	36954204	36954263	.	+	2	Parent=Os01t0856000-01
Chr01	irgsp1_rep	CDS	36954357	36954430	.	+	2	Parent=Os01t0856000-01
Chr01	irgsp1_rep	CDS	36954529	36954579	.	+	0	Parent=Os01t0856000-01
Chr01	irgsp1_rep	CDS	36954750	36954799	.	+	0	Parent=Os01t0856000-01
Chr01	irgsp1_rep	CDS	36954902	36954962	.	+	1	Parent=Os01t0856000-01
Chr01	irgsp1_rep	CDS	36955441	36955530	.	+	0	Parent=Os01t0856000-01
Chr01	irgsp1_rep	CDS	36955616	36955681	.	+	0	Parent=Os01t0856000-01
Chr01	irgsp1_rep	CDS	36955780	36955875	.	+	0	Parent=Os01t0856000-01
Chr01	irgsp1_rep	CDS	36955960	36956049	.	+	0	Parent=Os01t0856000-01
Chr01	irgsp1_rep	CDS	36956142	36956186	.	+	0	Parent=Os01t0856000-01
Chr01	irgsp1_rep	three_prime_UTR	36956187	36956283	.	+	.	Parent=Os01t0856000-01
Chr01	irgsp1_rep	three_prime_UTR	36956433	36956727	.	+	.	Parent=Os01t0856000-01
Chr01	irgsp1_rep	mRNA	36952783	36956712	.	+	.	ID=Os01t0856000-02;Name=Os01t0856000-02;Locus_id=Os01g0856000;CGSNL Gene Symbol=CDC6;CGSNL Gene Name=CELL DIVISION CONTROL 6;Oryzabase Gene Symbol Synonym(s)=OsCDC6;Note=Similar to predicted protein.;Transcript_evidence=AK107451 (DDBJ%2C Best hit);ORF_evidence=Q8W032 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),CDC6%2C C-terminal (IPR015163),Cell division protein Cdc6 (IPR016314);NIAS_FLcDNA=002-128-C05;Oryzabase=9203;Expression=AK107451;TENOR=Os01t0856000-02;KEGG=Os01t0856000-02
Chr01	irgsp1_rep	five_prime_UTR	36952783	36952869	.	+	.	Parent=Os01t0856000-02
Chr01	irgsp1_rep	CDS	36952870	36953043	.	+	0	Parent=Os01t0856000-02
Chr01	irgsp1_rep	CDS	36953166	36953567	.	+	0	Parent=Os01t0856000-02
Chr01	irgsp1_rep	CDS	36953648	36953722	.	+	0	Parent=Os01t0856000-02
Chr01	irgsp1_rep	CDS	36953798	36953904	.	+	0	Parent=Os01t0856000-02
Chr01	irgsp1_rep	CDS	36954005	36954111	.	+	1	Parent=Os01t0856000-02
Chr01	irgsp1_rep	CDS	36954204	36954263	.	+	2	Parent=Os01t0856000-02
Chr01	irgsp1_rep	CDS	36954357	36954430	.	+	2	Parent=Os01t0856000-02
Chr01	irgsp1_rep	CDS	36954529	36954579	.	+	0	Parent=Os01t0856000-02
Chr01	irgsp1_rep	CDS	36954750	36954799	.	+	0	Parent=Os01t0856000-02
Chr01	irgsp1_rep	CDS	36954902	36954962	.	+	1	Parent=Os01t0856000-02
Chr01	irgsp1_rep	CDS	36955441	36955530	.	+	0	Parent=Os01t0856000-02
Chr01	irgsp1_rep	CDS	36955616	36955681	.	+	0	Parent=Os01t0856000-02
Chr01	irgsp1_rep	CDS	36955780	36955875	.	+	0	Parent=Os01t0856000-02
Chr01	irgsp1_rep	CDS	36955960	36956049	.	+	0	Parent=Os01t0856000-02
Chr01	irgsp1_rep	CDS	36956142	36956186	.	+	0	Parent=Os01t0856000-02
Chr01	irgsp1_rep	three_prime_UTR	36956187	36956283	.	+	.	Parent=Os01t0856000-02
Chr01	irgsp1_rep	three_prime_UTR	36956433	36956712	.	+	.	Parent=Os01t0856000-02
Chr01	irgsp1_rep	mRNA	36998338	37004512	.	+	.	ID=Os01t0856500-01;Name=Os01t0856500-01;Locus_id=Os01g0856500;RAP-DB Gene Symbol Synonym(s)=OsLAX1%2C OsRAU1%2C OsAUX1;RAP-DB Gene Name Synonym(s)=like aux1-1%2C related to AUX1-1%2C auxin transporter 1;Oryzabase Gene Symbol Synonym(s)=OsLAX1%2C OsRAU1%2C OsAUX1%2C LAX1%2C RAU1%2C AUX1;Oryzabase Gene Name Synonym(s)=like aux1-1%2C related to AUX1-1%2C auxin transporter 1;Note=Auxin transporter%2C Primary root and root hair elongation%2C Cd stress response;Transcript_evidence=AK100090;ORF_evidence=Q5N892;InterPro=Amino acid transporter%2C transmembrane domain (IPR013057);NIAS_FLcDNA=J023003J03;Manual Curation=September 2%2C 2015;Literature_PMID=26140668,25311360;Oryzabase=11916;Expression=AK100090;TENOR=Os01t0856500-01;KEGG=Os01t0856500-01
Chr01	irgsp1_rep	five_prime_UTR	36998338	36998837	.	+	.	Parent=Os01t0856500-01
Chr01	irgsp1_rep	five_prime_UTR	36998987	36999016	.	+	.	Parent=Os01t0856500-01
Chr01	irgsp1_rep	CDS	36999017	36999217	.	+	0	Parent=Os01t0856500-01
Chr01	irgsp1_rep	CDS	36999350	36999535	.	+	0	Parent=Os01t0856500-01
Chr01	irgsp1_rep	CDS	36999956	37000068	.	+	0	Parent=Os01t0856500-01
Chr01	irgsp1_rep	CDS	37000245	37000428	.	+	1	Parent=Os01t0856500-01
Chr01	irgsp1_rep	CDS	37000540	37000637	.	+	0	Parent=Os01t0856500-01
Chr01	irgsp1_rep	CDS	37002304	37002769	.	+	1	Parent=Os01t0856500-01
Chr01	irgsp1_rep	CDS	37003886	37004116	.	+	0	Parent=Os01t0856500-01
Chr01	irgsp1_rep	three_prime_UTR	37004117	37004512	.	+	.	Parent=Os01t0856500-01
Chr01	irgsp1_rep	mRNA	36998743	37004479	.	+	.	ID=Os01t0856500-02;Name=Os01t0856500-02;Locus_id=Os01g0856500;Oryzabase Gene Symbol Synonym(s)=OsLAX1%2C OsRAU1%2C OsAUX1%2C LAX1%2C RAU1%2C AUX1;Oryzabase Gene Name Synonym(s)=like aux1-1%2C related to AUX1-1%2C auxin transporter 1;Note=Amino acid transporter%2C transmembrane domain containing protein.;Transcript_evidence=AK103239 (DDBJ%2C Best hit);ORF_evidence=NP_001151566.1 (RefSeq);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=J033123G17;Oryzabase=11916;Expression=AK103239;TENOR=Os01t0856500-02;KEGG=Os01t0856500-02
Chr01	irgsp1_rep	five_prime_UTR	36998743	36998837	.	+	.	Parent=Os01t0856500-02
Chr01	irgsp1_rep	five_prime_UTR	36998987	36999016	.	+	.	Parent=Os01t0856500-02
Chr01	irgsp1_rep	CDS	36999017	36999217	.	+	0	Parent=Os01t0856500-02
Chr01	irgsp1_rep	CDS	36999350	36999535	.	+	0	Parent=Os01t0856500-02
Chr01	irgsp1_rep	CDS	36999956	37000068	.	+	0	Parent=Os01t0856500-02
Chr01	irgsp1_rep	CDS	37000245	37000428	.	+	1	Parent=Os01t0856500-02
Chr01	irgsp1_rep	CDS	37000540	37000637	.	+	0	Parent=Os01t0856500-02
Chr01	irgsp1_rep	CDS	37002304	37002769	.	+	1	Parent=Os01t0856500-02
Chr01	irgsp1_rep	CDS	37003886	37004116	.	+	0	Parent=Os01t0856500-02
Chr01	irgsp1_rep	three_prime_UTR	37004117	37004479	.	+	.	Parent=Os01t0856500-02
Chr01	irgsp1_rep	mRNA	37000046	37004479	.	+	.	ID=Os01t0856500-03;Name=Os01t0856500-03;Locus_id=Os01g0856500;Oryzabase Gene Symbol Synonym(s)=OsLAX1%2C OsRAU1%2C OsAUX1%2C LAX1%2C RAU1%2C AUX1;Oryzabase Gene Name Synonym(s)=like aux1-1%2C related to AUX1-1%2C auxin transporter 1;Note=Splicing variant with unknown function;Transcript_evidence=AK068536;ORF_evidence=Q5N892-2;InterPro=Amino acid transporter%2C transmembrane domain (IPR013057);NIAS_FLcDNA=J013152G03;Manual Curation=September 2%2C 2015;Oryzabase=11916;Expression=AK068536;TENOR=Os01t0856500-03;KEGG=Os01t0856500-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	37000046	37000374	.	+	.	Parent=Os01t0856500-03
Chr01	irgsp1_rep	CDS	37000375	37000428	.	+	0	Parent=Os01t0856500-03
Chr01	irgsp1_rep	CDS	37000540	37000637	.	+	0	Parent=Os01t0856500-03
Chr01	irgsp1_rep	CDS	37002304	37002769	.	+	1	Parent=Os01t0856500-03
Chr01	irgsp1_rep	CDS	37003886	37004116	.	+	0	Parent=Os01t0856500-03
Chr01	irgsp1_rep	three_prime_UTR	37004117	37004479	.	+	.	Parent=Os01t0856500-03
Chr01	irgsp1_rep	mRNA	37000257	37004643	.	+	.	ID=Os01t0856500-04;Name=Os01t0856500-04;Locus_id=Os01g0856500;Oryzabase Gene Symbol Synonym(s)=OsLAX1%2C OsRAU1%2C OsAUX1%2C LAX1%2C RAU1%2C AUX1;Oryzabase Gene Name Synonym(s)=like aux1-1%2C related to AUX1-1%2C auxin transporter 1;Note=Similar to auxin transporter-like protein 1.;Transcript_evidence=AK103981 (DDBJ%2C Best hit);ORF_evidence=NP_001151566.1 (RefSeq);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=001-017-C03;Oryzabase=11916;Expression=AK103981;TENOR=Os01t0856500-04;KEGG=Os01t0856500-04
Chr01	irgsp1_rep	five_prime_UTR	37000257	37000257	.	+	.	Parent=Os01t0856500-04
Chr01	irgsp1_rep	CDS	37000258	37000428	.	+	0	Parent=Os01t0856500-04
Chr01	irgsp1_rep	CDS	37000540	37000637	.	+	0	Parent=Os01t0856500-04
Chr01	irgsp1_rep	CDS	37002304	37002769	.	+	1	Parent=Os01t0856500-04
Chr01	irgsp1_rep	CDS	37003886	37004116	.	+	0	Parent=Os01t0856500-04
Chr01	irgsp1_rep	three_prime_UTR	37004117	37004643	.	+	.	Parent=Os01t0856500-04
Chr01	irgsp1_rep	mRNA	36999014	37004261	.	-	.	ID=Os01t0856550-00;Name=Os01t0856550-00;Locus_id=Os01g0856550;Note=Non-protein coding transcript.;Transcript_evidence=tplb0034o11 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os01t0856550-00
Chr01	irgsp1_rep	exon	37003889	37004261	.	-	.	Parent=Os01t0856550-00
Chr01	irgsp1_rep	exon	37002304	37002774	.	-	.	Parent=Os01t0856550-00
Chr01	irgsp1_rep	exon	37000519	37000637	.	-	.	Parent=Os01t0856550-00
Chr01	irgsp1_rep	exon	37000255	37000413	.	-	.	Parent=Os01t0856550-00
Chr01	irgsp1_rep	exon	36999953	37000077	.	-	.	Parent=Os01t0856550-00
Chr01	irgsp1_rep	exon	36999347	36999532	.	-	.	Parent=Os01t0856550-00
Chr01	irgsp1_rep	exon	36999014	36999214	.	-	.	Parent=Os01t0856550-00
Chr01	irgsp1_rep	mRNA	37005748	37013517	.	-	.	ID=Os01t0856600-01;Name=Os01t0856600-01;Locus_id=Os01g0856600;Note=Nsp1-like%2C C-terminal family protein.;Transcript_evidence=AK064176 (DDBJ%2C Best hit);ORF_evidence=NP_850429.1 (RefSeq);NIAS_FLcDNA=002-104-A10;Expression=AK064176;TENOR=Os01t0856600-01;KEGG=Os01t0856600-01
Chr01	irgsp1_rep	five_prime_UTR	37013517	37013517	.	-	.	Parent=Os01t0856600-01
Chr01	irgsp1_rep	CDS	37013271	37013516	.	-	0	Parent=Os01t0856600-01
Chr01	irgsp1_rep	CDS	37012687	37012835	.	-	0	Parent=Os01t0856600-01
Chr01	irgsp1_rep	CDS	37008103	37008162	.	-	1	Parent=Os01t0856600-01
Chr01	irgsp1_rep	CDS	37007154	37007241	.	-	1	Parent=Os01t0856600-01
Chr01	irgsp1_rep	CDS	37006985	37007083	.	-	0	Parent=Os01t0856600-01
Chr01	irgsp1_rep	CDS	37006372	37006464	.	-	0	Parent=Os01t0856600-01
Chr01	irgsp1_rep	three_prime_UTR	37005748	37006371	.	-	.	Parent=Os01t0856600-01
Chr01	irgsp1_rep	mRNA	37017072	37018035	.	+	.	ID=Os01t0856800-01;Name=Os01t0856800-01;Locus_id=Os01g0856800;Note=Similar to pleckstrin homology domain-containing protein 1.;Transcript_evidence=AK072489 (DDBJ%2C Best hit);ORF_evidence=NP_001152339.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Pleckstrin homology domain (IPR001849),Pleckstrin homology-type (IPR011993);NIAS_FLcDNA=J023130C15;Expression=AK072489;TENOR=Os01t0856800-01;KEGG=Os01t0856800-01
Chr01	irgsp1_rep	five_prime_UTR	37017072	37017159	.	+	.	Parent=Os01t0856800-01
Chr01	irgsp1_rep	CDS	37017160	37017636	.	+	0	Parent=Os01t0856800-01
Chr01	irgsp1_rep	three_prime_UTR	37017637	37018035	.	+	.	Parent=Os01t0856800-01
Chr01	irgsp1_rep	mRNA	37017151	37017910	.	+	.	ID=Os01t0856800-02;Name=Os01t0856800-02;Locus_id=Os01g0856800;Note=Pleckstrin homology-type domain containing protein.;Transcript_evidence=AK063895 (DDBJ%2C Best hit);ORF_evidence=NP_001152339.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Pleckstrin homology domain (IPR001849),Pleckstrin homology-type (IPR011993);NIAS_FLcDNA=001-122-G10;Expression=AK063895;TENOR=Os01t0856800-02;KEGG=Os01t0856800-02
Chr01	irgsp1_rep	five_prime_UTR	37017151	37017159	.	+	.	Parent=Os01t0856800-02
Chr01	irgsp1_rep	CDS	37017160	37017358	.	+	0	Parent=Os01t0856800-02
Chr01	irgsp1_rep	CDS	37017407	37017636	.	+	2	Parent=Os01t0856800-02
Chr01	irgsp1_rep	three_prime_UTR	37017637	37017910	.	+	.	Parent=Os01t0856800-02
Chr01	irgsp1_rep	mRNA	37019957	37020241	.	-	.	ID=Os01t0856850-00;Name=Os01t0856850-00;Locus_id=Os01g0856850;Note=Similar to ribosomal protein S7.;Transcript_evidence=EU957350 (DDBJ);ORF_evidence=NP_039458.1 (RefSeq);InterPro=Ribosomal protein S7 domain (IPR023798);TENOR=Os01t0856850-00
Chr01	irgsp1_rep	five_prime_UTR	37020169	37020241	.	-	.	Parent=Os01t0856850-00
Chr01	irgsp1_rep	CDS	37020025	37020168	.	-	0	Parent=Os01t0856850-00
Chr01	irgsp1_rep	three_prime_UTR	37019957	37020024	.	-	.	Parent=Os01t0856850-00
Chr01	irgsp1_rep	mRNA	37021544	37023529	.	+	.	ID=Os01t0856900-01;Name=Os01t0856900-01;Locus_id=Os01g0856900;RAP-DB Gene Symbol Synonym(s)=SBDCP1;RAP-DB Gene Name Synonym(s)=starch binding domain-containing protein 1;CGSNL Gene Symbol=SBDCP1;CGSNL Gene Name=STARCH BINDING DOMAIN-CONTAINING PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsSBDCP1;Oryzabase Gene Name Synonym(s)=starch binding domain-containing protein 1;Note=Carbohydrate-binding module 20 (CBM20)-containing protein%2C Starch biosynthesis;Transcript_evidence=AK107570;ORF_evidence=Q94DE9;GO=Molecular Function: carbohydrate binding (GO:0030246),Molecular Function: starch binding (GO:2001070);InterPro=Carbohydrate-binding-like fold (IPR013784),Immunoglobulin-like fold (IPR013783),Carbohydrate binding module family 20 (IPR002044);NIAS_FLcDNA=002-130-D02;Manual Curation=April 4%2C 2019;Literature_PMID=30523657;Oryzabase=23135;Expression=AK107570;TENOR=Os01t0856900-01;KEGG=Os01t0856900-01;Subcellular location=plastid (GO:0009536)
Chr01	irgsp1_rep	five_prime_UTR	37021544	37021612	.	+	.	Parent=Os01t0856900-01
Chr01	irgsp1_rep	CDS	37021613	37021961	.	+	0	Parent=Os01t0856900-01
Chr01	irgsp1_rep	CDS	37022041	37022201	.	+	2	Parent=Os01t0856900-01
Chr01	irgsp1_rep	CDS	37022280	37022633	.	+	0	Parent=Os01t0856900-01
Chr01	irgsp1_rep	CDS	37022991	37023266	.	+	0	Parent=Os01t0856900-01
Chr01	irgsp1_rep	three_prime_UTR	37023267	37023529	.	+	.	Parent=Os01t0856900-01
Chr01	irgsp1_rep	mRNA	37023827	37031493	.	-	.	ID=Os01t0857000-01;Name=Os01t0857000-01;Locus_id=Os01g0857000;CGSNL Gene Symbol=-;CGSNL Gene Name=-;Oryzabase Gene Symbol Synonym(s)=OsCPL2%2C CPL2;Oryzabase Gene Name Synonym(s)=C-TERMINAL DOMAIN  PHOSPHATASE-LIKE 2;Note=Double-stranded RNA-binding-like domain containing protein.;Transcript_evidence=AK119434 (DDBJ%2C Best hit);ORF_evidence=B8ACG8 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: RNA binding (GO:0003723),Molecular Function: double-stranded RNA binding (GO:0003725),Molecular Function: protein binding (GO:0005515);InterPro=Double-stranded RNA-binding (IPR001159),NLI interacting factor (IPR004274),Double-stranded RNA-binding-like (IPR014720),HAD-like domain (IPR023214);NIAS_FLcDNA=001-133-A11;Oryzabase=10450;Expression=AK119434;TENOR=Os01t0857000-01;KEGG=Os01t0857000-01
Chr01	irgsp1_rep	five_prime_UTR	37031461	37031493	.	-	.	Parent=Os01t0857000-01
Chr01	irgsp1_rep	CDS	37031128	37031460	.	-	0	Parent=Os01t0857000-01
Chr01	irgsp1_rep	CDS	37030340	37030810	.	-	0	Parent=Os01t0857000-01
Chr01	irgsp1_rep	CDS	37029418	37029628	.	-	0	Parent=Os01t0857000-01
Chr01	irgsp1_rep	CDS	37028704	37028861	.	-	2	Parent=Os01t0857000-01
Chr01	irgsp1_rep	CDS	37028556	37028626	.	-	0	Parent=Os01t0857000-01
Chr01	irgsp1_rep	CDS	37028357	37028462	.	-	1	Parent=Os01t0857000-01
Chr01	irgsp1_rep	CDS	37028191	37028280	.	-	0	Parent=Os01t0857000-01
Chr01	irgsp1_rep	CDS	37027781	37027829	.	-	0	Parent=Os01t0857000-01
Chr01	irgsp1_rep	CDS	37027338	37027468	.	-	2	Parent=Os01t0857000-01
Chr01	irgsp1_rep	CDS	37027202	37027255	.	-	0	Parent=Os01t0857000-01
Chr01	irgsp1_rep	CDS	37026837	37026933	.	-	0	Parent=Os01t0857000-01
Chr01	irgsp1_rep	CDS	37026476	37026684	.	-	2	Parent=Os01t0857000-01
Chr01	irgsp1_rep	CDS	37026284	37026364	.	-	0	Parent=Os01t0857000-01
Chr01	irgsp1_rep	CDS	37025869	37025934	.	-	0	Parent=Os01t0857000-01
Chr01	irgsp1_rep	CDS	37024509	37024577	.	-	0	Parent=Os01t0857000-01
Chr01	irgsp1_rep	CDS	37024196	37024270	.	-	0	Parent=Os01t0857000-01
Chr01	irgsp1_rep	three_prime_UTR	37023827	37024195	.	-	.	Parent=Os01t0857000-01
Chr01	irgsp1_rep	mRNA	37023812	37031230	.	-	.	ID=Os01t0857000-02;Name=Os01t0857000-02;Locus_id=Os01g0857000;CGSNL Gene Symbol=-;CGSNL Gene Name=-;Oryzabase Gene Symbol Synonym(s)=OsCPL2%2C CPL2;Oryzabase Gene Name Synonym(s)=C-TERMINAL DOMAIN  PHOSPHATASE-LIKE 2;Note=Similar to CPL2 (CTD phosphatase-like 2)%3B double-stranded RNA binding.;Transcript_evidence=AK072005 (DDBJ%2C Best hit);ORF_evidence=B8ACG8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=NLI interacting factor (IPR004274),HAD-like domain (IPR023214);NIAS_FLcDNA=J013098C21;Oryzabase=10450;Expression=AK072005;TENOR=Os01t0857000-02;KEGG=Os01t0857000-02
Chr01	irgsp1_rep	five_prime_UTR	37031230	37031230	.	-	.	Parent=Os01t0857000-02
Chr01	irgsp1_rep	CDS	37031128	37031229	.	-	0	Parent=Os01t0857000-02
Chr01	irgsp1_rep	CDS	37030340	37030810	.	-	0	Parent=Os01t0857000-02
Chr01	irgsp1_rep	CDS	37029418	37029628	.	-	0	Parent=Os01t0857000-02
Chr01	irgsp1_rep	CDS	37028704	37028861	.	-	2	Parent=Os01t0857000-02
Chr01	irgsp1_rep	CDS	37028556	37028626	.	-	0	Parent=Os01t0857000-02
Chr01	irgsp1_rep	CDS	37028357	37028462	.	-	1	Parent=Os01t0857000-02
Chr01	irgsp1_rep	CDS	37028191	37028280	.	-	0	Parent=Os01t0857000-02
Chr01	irgsp1_rep	CDS	37027803	37027829	.	-	0	Parent=Os01t0857000-02
Chr01	irgsp1_rep	CDS	37027338	37027423	.	-	0	Parent=Os01t0857000-02
Chr01	irgsp1_rep	CDS	37027234	37027255	.	-	1	Parent=Os01t0857000-02
Chr01	irgsp1_rep	three_prime_UTR	37027202	37027233	.	-	.	Parent=Os01t0857000-02
Chr01	irgsp1_rep	three_prime_UTR	37026837	37026933	.	-	.	Parent=Os01t0857000-02
Chr01	irgsp1_rep	three_prime_UTR	37026476	37026684	.	-	.	Parent=Os01t0857000-02
Chr01	irgsp1_rep	three_prime_UTR	37026284	37026364	.	-	.	Parent=Os01t0857000-02
Chr01	irgsp1_rep	three_prime_UTR	37025869	37025934	.	-	.	Parent=Os01t0857000-02
Chr01	irgsp1_rep	three_prime_UTR	37024504	37024577	.	-	.	Parent=Os01t0857000-02
Chr01	irgsp1_rep	three_prime_UTR	37023812	37024270	.	-	.	Parent=Os01t0857000-02
Chr01	irgsp1_rep	mRNA	37025077	37025833	.	-	.	ID=Os01t0857100-01;Name=Os01t0857100-01;Locus_id=Os01g0857100;Note=Non-protein coding transcript.;Transcript_evidence=AK105161 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-104-C12;TENOR=Os01t0857100-01
Chr01	irgsp1_rep	exon	37025077	37025833	.	-	.	Parent=Os01t0857100-01
Chr01	irgsp1_rep	mRNA	37034026	37035656	.	-	.	ID=Os01t0857200-01;Name=Os01t0857200-01;Locus_id=Os01g0857200;Note=Di-trans-poly-cis-decaprenylcistransferase family protein.;Transcript_evidence=AK287626 (DDBJ%2C Best hit);ORF_evidence=NP_001150939.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring alkyl or aryl (other than methyl) groups (GO:0016765);InterPro=Di-trans-poly-cis-decaprenylcistransferase-like (IPR001441),Di-trans-poly-cis-decaprenylcistransferase-like%2C conserved site (IPR018520);NIAS_FLcDNA=J065069K22;TENOR=Os01t0857200-01;KEGG=Os01t0857200-01 (EC:2.5.1.-)
Chr01	irgsp1_rep	five_prime_UTR	37035650	37035656	.	-	.	Parent=Os01t0857200-01
Chr01	irgsp1_rep	CDS	37035284	37035649	.	-	0	Parent=Os01t0857200-01
Chr01	irgsp1_rep	CDS	37035134	37035201	.	-	0	Parent=Os01t0857200-01
Chr01	irgsp1_rep	CDS	37034400	37034853	.	-	1	Parent=Os01t0857200-01
Chr01	irgsp1_rep	three_prime_UTR	37034370	37034399	.	-	.	Parent=Os01t0857200-01
Chr01	irgsp1_rep	three_prime_UTR	37034026	37034295	.	-	.	Parent=Os01t0857200-01
Chr01	irgsp1_rep	mRNA	37035218	37036018	.	+	.	ID=Os01t0857250-01;Name=Os01t0857250-01;Locus_id=Os01g0857250;Note=Conserved hypothetical protein.;Transcript_evidence=AK243264 (DDBJ%2C Best hit);ORF_evidence=NP_001172658.1 (RefSeq);NIAS_FLcDNA=J100049D24;TENOR=Os01t0857250-01;KEGG=Os01t0857250-01
Chr01	irgsp1_rep	five_prime_UTR	37035218	37035335	.	+	.	Parent=Os01t0857250-01
Chr01	irgsp1_rep	CDS	37035336	37035596	.	+	0	Parent=Os01t0857250-01
Chr01	irgsp1_rep	three_prime_UTR	37035597	37036018	.	+	.	Parent=Os01t0857250-01
Chr01	irgsp1_rep	mRNA	37039556	37043230	.	-	.	ID=Os01t0857300-01;Name=Os01t0857300-01;Locus_id=Os01g0857300;Note=Three-deoxy-D-manno-octulosonic-acid transferase%2C N-terminal domain containing protein.;Transcript_evidence=AK102776 (DDBJ%2C Best hit);ORF_evidence=B9EUS1 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity (GO:0016740);InterPro=Three-deoxy-D-manno-octulosonic-acid transferase%2C N-terminal (IPR007507);NIAS_FLcDNA=J033107I02;TENOR=Os01t0857300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	37043212	37043230	.	-	.	Parent=Os01t0857300-01
Chr01	irgsp1_rep	CDS	37042898	37043211	.	-	0	Parent=Os01t0857300-01
Chr01	irgsp1_rep	CDS	37042757	37042799	.	-	1	Parent=Os01t0857300-01
Chr01	irgsp1_rep	CDS	37042206	37042328	.	-	0	Parent=Os01t0857300-01
Chr01	irgsp1_rep	CDS	37041881	37042039	.	-	0	Parent=Os01t0857300-01
Chr01	irgsp1_rep	three_prime_UTR	37041766	37041880	.	-	.	Parent=Os01t0857300-01
Chr01	irgsp1_rep	three_prime_UTR	37041489	37041605	.	-	.	Parent=Os01t0857300-01
Chr01	irgsp1_rep	three_prime_UTR	37040504	37041245	.	-	.	Parent=Os01t0857300-01
Chr01	irgsp1_rep	three_prime_UTR	37040344	37040414	.	-	.	Parent=Os01t0857300-01
Chr01	irgsp1_rep	three_prime_UTR	37039556	37040004	.	-	.	Parent=Os01t0857300-01
Chr01	irgsp1_rep	mRNA	37043496	37049889	.	-	.	ID=Os01t0857400-01;Name=Os01t0857400-01;Locus_id=Os01g0857400;Oryzabase Gene Symbol Synonym(s)=OsGAT3;Oryzabase Gene Name Synonym(s)=gamma-aminobutyric acid transporter 3;Note=Amino acid transporter%2C transmembrane domain containing protein.;Transcript_evidence=AK103684 (DDBJ%2C Best hit);ORF_evidence=XP_002313644.1 (RefSeq);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=J033136F15;Oryzabase=18511;Expression=AK103684;TENOR=Os01t0857400-01;KEGG=Os01t0857400-01
Chr01	irgsp1_rep	five_prime_UTR	37049678	37049889	.	-	.	Parent=Os01t0857400-01
Chr01	irgsp1_rep	CDS	37049569	37049677	.	-	0	Parent=Os01t0857400-01
Chr01	irgsp1_rep	CDS	37046946	37047176	.	-	2	Parent=Os01t0857400-01
Chr01	irgsp1_rep	CDS	37044849	37044946	.	-	2	Parent=Os01t0857400-01
Chr01	irgsp1_rep	CDS	37044550	37044736	.	-	0	Parent=Os01t0857400-01
Chr01	irgsp1_rep	CDS	37043698	37044446	.	-	2	Parent=Os01t0857400-01
Chr01	irgsp1_rep	three_prime_UTR	37043496	37043697	.	-	.	Parent=Os01t0857400-01
Chr01	irgsp1_rep	mRNA	37062340	37064615	.	+	.	ID=Os01t0857500-01;Name=Os01t0857500-01;Locus_id=Os01g0857500;Note=Xanthine/uracil/vitamin C permease family protein.;Transcript_evidence=AK068791 (DDBJ%2C Best hit);ORF_evidence=XP_002313653.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Xanthine/uracil/vitamin C permease (IPR006043);NIAS_FLcDNA=J013164P20;Expression=AK068791;TENOR=Os01t0857500-01;KEGG=Os01t0857500-01
Chr01	irgsp1_rep	five_prime_UTR	37062340	37062618	.	+	.	Parent=Os01t0857500-01
Chr01	irgsp1_rep	CDS	37062619	37062871	.	+	0	Parent=Os01t0857500-01
Chr01	irgsp1_rep	CDS	37062978	37063264	.	+	2	Parent=Os01t0857500-01
Chr01	irgsp1_rep	CDS	37064041	37064262	.	+	0	Parent=Os01t0857500-01
Chr01	irgsp1_rep	three_prime_UTR	37064263	37064615	.	+	.	Parent=Os01t0857500-01
Chr01	irgsp1_rep	mRNA	37065754	37068895	.	-	.	ID=Os01t0857600-01;Name=Os01t0857600-01;Locus_id=Os01g0857600;Note=Similar to H0811D08.6 protein.;Transcript_evidence=AK067838 (DDBJ%2C Best hit);ORF_evidence=Q25AP3 (UniProt);NIAS_FLcDNA=J013126K03;Expression=AK067838;TENOR=Os01t0857600-01;KEGG=Os01t0857600-01
Chr01	irgsp1_rep	five_prime_UTR	37068649	37068895	.	-	.	Parent=Os01t0857600-01
Chr01	irgsp1_rep	five_prime_UTR	37068045	37068129	.	-	.	Parent=Os01t0857600-01
Chr01	irgsp1_rep	CDS	37068004	37068044	.	-	0	Parent=Os01t0857600-01
Chr01	irgsp1_rep	CDS	37067639	37067918	.	-	1	Parent=Os01t0857600-01
Chr01	irgsp1_rep	CDS	37065918	37067240	.	-	0	Parent=Os01t0857600-01
Chr01	irgsp1_rep	three_prime_UTR	37065754	37065917	.	-	.	Parent=Os01t0857600-01
Chr01	irgsp1_rep	mRNA	37065903	37068669	.	+	.	ID=Os01t0857650-00;Name=Os01t0857650-00;Locus_id=Os01g0857650;Note=Hypothetical protein.;Transcript_evidence=tplb0041a03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0857650-00
Chr01	irgsp1_rep	five_prime_UTR	37065903	37066452	.	+	.	Parent=Os01t0857650-00
Chr01	irgsp1_rep	five_prime_UTR	37066597	37067011	.	+	.	Parent=Os01t0857650-00
Chr01	irgsp1_rep	five_prime_UTR	37067300	37067903	.	+	.	Parent=Os01t0857650-00
Chr01	irgsp1_rep	five_prime_UTR	37067980	37067984	.	+	.	Parent=Os01t0857650-00
Chr01	irgsp1_rep	CDS	37067985	37068347	.	+	0	Parent=Os01t0857650-00
Chr01	irgsp1_rep	three_prime_UTR	37068348	37068447	.	+	.	Parent=Os01t0857650-00
Chr01	irgsp1_rep	three_prime_UTR	37068535	37068669	.	+	.	Parent=Os01t0857650-00
Chr01	irgsp1_rep	mRNA	37069395	37071889	.	-	.	ID=Os01t0857700-01;Name=Os01t0857700-01;Locus_id=Os01g0857700;Note=Similar to G10.;Transcript_evidence=AK243054 (DDBJ%2C Best hit),AK066959 (DDBJ%2C Best hit),AK099794 (DDBJ%2C Best hit);ORF_evidence=NP_001148940.1 (RefSeq);GO=Cellular Component: nucleus (GO:0005634);InterPro=G10 protein (IPR001748),BUD31/G10-related%2C conserved site (IPR018230);NIAS_FLcDNA=J100013E08,J013093N15,J013097F07;TENOR=Os01t0857700-01;KEGG=Os01t0857700-01
Chr01	irgsp1_rep	five_prime_UTR	37071736	37071889	.	-	.	Parent=Os01t0857700-01
Chr01	irgsp1_rep	five_prime_UTR	37071131	37071174	.	-	.	Parent=Os01t0857700-01
Chr01	irgsp1_rep	CDS	37071037	37071130	.	-	0	Parent=Os01t0857700-01
Chr01	irgsp1_rep	CDS	37070770	37070957	.	-	2	Parent=Os01t0857700-01
Chr01	irgsp1_rep	CDS	37069672	37069827	.	-	0	Parent=Os01t0857700-01
Chr01	irgsp1_rep	three_prime_UTR	37069395	37069671	.	-	.	Parent=Os01t0857700-01
Chr01	irgsp1_rep	mRNA	37076493	37079538	.	+	.	ID=Os01t0857900-01;Name=Os01t0857900-01;Locus_id=Os01g0857900;Oryzabase Gene Symbol Synonym(s)=OsWD40-28;Note=Conserved hypothetical protein.;Transcript_evidence=AK111811 (DDBJ%2C Best hit);ORF_evidence=Q6Z0X1 (UniProt);NIAS_FLcDNA=J013122D09;Oryzabase=10709;TENOR=Os01t0857900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	37076493	37076654	.	+	.	Parent=Os01t0857900-01
Chr01	irgsp1_rep	CDS	37076655	37076807	.	+	0	Parent=Os01t0857900-01
Chr01	irgsp1_rep	CDS	37076981	37077175	.	+	0	Parent=Os01t0857900-01
Chr01	irgsp1_rep	three_prime_UTR	37077176	37077225	.	+	.	Parent=Os01t0857900-01
Chr01	irgsp1_rep	three_prime_UTR	37077340	37077499	.	+	.	Parent=Os01t0857900-01
Chr01	irgsp1_rep	three_prime_UTR	37077588	37078381	.	+	.	Parent=Os01t0857900-01
Chr01	irgsp1_rep	three_prime_UTR	37078513	37078667	.	+	.	Parent=Os01t0857900-01
Chr01	irgsp1_rep	three_prime_UTR	37078744	37078833	.	+	.	Parent=Os01t0857900-01
Chr01	irgsp1_rep	three_prime_UTR	37078916	37078987	.	+	.	Parent=Os01t0857900-01
Chr01	irgsp1_rep	three_prime_UTR	37079399	37079538	.	+	.	Parent=Os01t0857900-01
Chr01	irgsp1_rep	mRNA	37079120	37079350	.	+	.	ID=Os01t0857925-00;Name=Os01t0857925-00;Locus_id=Os01g0857925;Note=Conserved hypothetical protein.;Transcript_evidence=CT834955 (DDBJ%2C Best hit);ORF_evidence=Q6Z0X1 (UniProt);TENOR=Os01t0857925-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	37079120	37079120	.	+	.	Parent=Os01t0857925-00
Chr01	irgsp1_rep	CDS	37079121	37079201	.	+	0	Parent=Os01t0857925-00
Chr01	irgsp1_rep	three_prime_UTR	37079202	37079350	.	+	.	Parent=Os01t0857925-00
Chr01	irgsp1_rep	mRNA	37079730	37089386	.	+	.	ID=Os01t0857950-01;Name=Os01t0857950-01;Locus_id=Os01g0857950;Note=Hypothetical gene.;Transcript_evidence=AK287971 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J075072P13;TENOR=Os01t0857950-01
Chr01	irgsp1_rep	five_prime_UTR	37079730	37080079	.	+	.	Parent=Os01t0857950-01
Chr01	irgsp1_rep	five_prime_UTR	37080203	37080852	.	+	.	Parent=Os01t0857950-01
Chr01	irgsp1_rep	five_prime_UTR	37080941	37080987	.	+	.	Parent=Os01t0857950-01
Chr01	irgsp1_rep	five_prime_UTR	37081145	37081317	.	+	.	Parent=Os01t0857950-01
Chr01	irgsp1_rep	five_prime_UTR	37081902	37081979	.	+	.	Parent=Os01t0857950-01
Chr01	irgsp1_rep	five_prime_UTR	37082492	37082554	.	+	.	Parent=Os01t0857950-01
Chr01	irgsp1_rep	five_prime_UTR	37082630	37082702	.	+	.	Parent=Os01t0857950-01
Chr01	irgsp1_rep	five_prime_UTR	37082891	37082930	.	+	.	Parent=Os01t0857950-01
Chr01	irgsp1_rep	five_prime_UTR	37083043	37083109	.	+	.	Parent=Os01t0857950-01
Chr01	irgsp1_rep	five_prime_UTR	37083239	37083370	.	+	.	Parent=Os01t0857950-01
Chr01	irgsp1_rep	five_prime_UTR	37083460	37085213	.	+	.	Parent=Os01t0857950-01
Chr01	irgsp1_rep	five_prime_UTR	37085869	37085962	.	+	.	Parent=Os01t0857950-01
Chr01	irgsp1_rep	five_prime_UTR	37086782	37086819	.	+	.	Parent=Os01t0857950-01
Chr01	irgsp1_rep	five_prime_UTR	37086962	37087088	.	+	.	Parent=Os01t0857950-01
Chr01	irgsp1_rep	five_prime_UTR	37088685	37088997	.	+	.	Parent=Os01t0857950-01
Chr01	irgsp1_rep	CDS	37088998	37089386	.	+	0	Parent=Os01t0857950-01
Chr01	irgsp1_rep	mRNA	37079794	37079986	.	-	.	ID=Os01t0857975-00;Name=Os01t0857975-00;Locus_id=Os01g0857975;Note=Non-protein coding transcript.;Transcript_evidence=CT834988 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os01t0857975-00
Chr01	irgsp1_rep	exon	37079876	37079986	.	-	.	Parent=Os01t0857975-00
Chr01	irgsp1_rep	exon	37079794	37079869	.	-	.	Parent=Os01t0857975-00
Chr01	irgsp1_rep	mRNA	37080266	37085162	.	-	.	ID=Os01t0858000-00;Name=Os01t0858000-00;Locus_id=Os01g0858000;Note=WD40 repeat domain containing protein.;Transcript_evidence=AK370475 (DDBJ);ORF_evidence=NP_001044858.1 (RefSeq);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),AT hook%2C DNA-binding motif (IPR017956),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),AT hook-like (IPR020478);TENOR=Os01t0858000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	37083460	37085162	.	-	0	Parent=Os01t0858000-00
Chr01	irgsp1_rep	CDS	37083239	37083370	.	-	1	Parent=Os01t0858000-00
Chr01	irgsp1_rep	CDS	37083043	37083109	.	-	1	Parent=Os01t0858000-00
Chr01	irgsp1_rep	CDS	37082891	37082930	.	-	0	Parent=Os01t0858000-00
Chr01	irgsp1_rep	CDS	37082630	37082702	.	-	2	Parent=Os01t0858000-00
Chr01	irgsp1_rep	CDS	37082492	37082554	.	-	1	Parent=Os01t0858000-00
Chr01	irgsp1_rep	CDS	37081902	37081979	.	-	1	Parent=Os01t0858000-00
Chr01	irgsp1_rep	CDS	37081145	37081317	.	-	1	Parent=Os01t0858000-00
Chr01	irgsp1_rep	CDS	37080941	37080987	.	-	2	Parent=Os01t0858000-00
Chr01	irgsp1_rep	CDS	37080610	37080852	.	-	0	Parent=Os01t0858000-00
Chr01	irgsp1_rep	CDS	37080515	37080532	.	-	0	Parent=Os01t0858000-00
Chr01	irgsp1_rep	three_prime_UTR	37080266	37080514	.	-	.	Parent=Os01t0858000-00
Chr01	irgsp1_rep	mRNA	37095403	37096978	.	-	.	ID=Os01t0858200-01;Name=Os01t0858200-01;Locus_id=Os01g0858200;Note=Similar to ESP3 (ENHANCED SILENCING PHENOTYPE 3)%3B ATP binding / ATP-dependent RNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid binding.;Transcript_evidence=AK108646 (DDBJ%2C Best hit);ORF_evidence=NP_174527.2 (RefSeq);NIAS_FLcDNA=002-148-B08;TENOR=Os01t0858200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	37096025	37096978	.	-	.	Parent=Os01t0858200-01
Chr01	irgsp1_rep	five_prime_UTR	37095915	37096012	.	-	.	Parent=Os01t0858200-01
Chr01	irgsp1_rep	CDS	37095591	37095914	.	-	0	Parent=Os01t0858200-01
Chr01	irgsp1_rep	three_prime_UTR	37095403	37095590	.	-	.	Parent=Os01t0858200-01
Chr01	irgsp1_rep	mRNA	37097377	37099130	.	-	.	ID=Os01t0858350-01;Name=Os01t0858350-01;Locus_id=Os01g0858350;CGSNL Gene Symbol=CYP94C3;CGSNL Gene Name=CYTOCHROME P450 94C3;Oryzabase Gene Symbol Synonym(s)=OsCYP94C3;Oryzabase Gene Name Synonym(s)=CytoChrome P450 94C3;Note=Similar to cytoChrome P450.;Transcript_evidence=AK061128 (DDBJ%2C Best hit),AK100746 (DDBJ%2C Best hit);ORF_evidence=XP_002328165.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);NIAS_FLcDNA=006-207-H02,J023118I04;Oryzabase=23104;TENOR=Os01t0858350-01
Chr01	irgsp1_rep	five_prime_UTR	37099039	37099130	.	-	.	Parent=Os01t0858350-01
Chr01	irgsp1_rep	CDS	37097464	37099038	.	-	0	Parent=Os01t0858350-01
Chr01	irgsp1_rep	three_prime_UTR	37097377	37097463	.	-	.	Parent=Os01t0858350-01
Chr01	irgsp1_rep	mRNA	37118464	37120942	.	-	.	ID=Os01t0858500-01;Name=Os01t0858500-01;Locus_id=Os01g0858500;Note=Similar to Transcription initiation factor TFIID subunit 12 (Transcription initiation factor TFIID 20/15 kDa subunits) (TAFII-20/TAFII-15) (TAFII20/TAFII15).;Transcript_evidence=AK108478 (DDBJ%2C Best hit);ORF_evidence=NP_566367.1 (RefSeq);GO=Biological Process: transcription initiation%2C DNA-dependent (GO:0006352),Cellular Component: transcription factor TFIID complex (GO:0005669),Molecular Function: DNA binding (GO:0003677);InterPro=Transcription initiation factor TFIID (IPR003228),Histone-fold (IPR009072);NIAS_FLcDNA=002-143-F01;Expression=AK108478;TENOR=Os01t0858500-01;KEGG=Os01t0858500-01
Chr01	irgsp1_rep	five_prime_UTR	37120907	37120942	.	-	.	Parent=Os01t0858500-01
Chr01	irgsp1_rep	CDS	37120364	37120906	.	-	0	Parent=Os01t0858500-01
Chr01	irgsp1_rep	CDS	37119708	37119782	.	-	0	Parent=Os01t0858500-01
Chr01	irgsp1_rep	CDS	37119351	37119429	.	-	0	Parent=Os01t0858500-01
Chr01	irgsp1_rep	CDS	37119175	37119239	.	-	2	Parent=Os01t0858500-01
Chr01	irgsp1_rep	CDS	37119036	37119071	.	-	0	Parent=Os01t0858500-01
Chr01	irgsp1_rep	CDS	37118695	37118802	.	-	0	Parent=Os01t0858500-01
Chr01	irgsp1_rep	three_prime_UTR	37118464	37118694	.	-	.	Parent=Os01t0858500-01
Chr01	irgsp1_rep	mRNA	37123132	37126849	.	+	.	ID=Os01t0858700-01;Name=Os01t0858700-01;Locus_id=Os01g0858700;Note=Conserved hypothetical protein.;Transcript_evidence=AK119765 (DDBJ%2C Best hit),AK070663 (DDBJ%2C Best hit);ORF_evidence=B8ACH8 (UniProt);NIAS_FLcDNA=002-172-A01,J023056F20;TENOR=Os01t0858700-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	37123132	37123154	.	+	.	Parent=Os01t0858700-01
Chr01	irgsp1_rep	CDS	37123155	37123436	.	+	0	Parent=Os01t0858700-01
Chr01	irgsp1_rep	CDS	37123537	37123643	.	+	0	Parent=Os01t0858700-01
Chr01	irgsp1_rep	CDS	37123889	37124390	.	+	1	Parent=Os01t0858700-01
Chr01	irgsp1_rep	CDS	37124952	37125067	.	+	0	Parent=Os01t0858700-01
Chr01	irgsp1_rep	CDS	37125748	37125952	.	+	1	Parent=Os01t0858700-01
Chr01	irgsp1_rep	three_prime_UTR	37125953	37126849	.	+	.	Parent=Os01t0858700-01
Chr01	irgsp1_rep	mRNA	37133703	37135319	.	+	.	ID=Os01t0858900-01;Name=Os01t0858900-01;Locus_id=Os01g0858900;Note=Glycosyl transferase%2C family 29 protein.;Transcript_evidence=AK107493 (DDBJ%2C Best hit);ORF_evidence=NP_001151877.1 (RefSeq);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: integral to Golgi membrane (GO:0030173),Molecular Function: sialyltransferase activity (GO:0008373);InterPro=Glycosyl transferase%2C family 29 (IPR001675),Sialyltransferase (IPR012163);NIAS_FLcDNA=002-129-D04;Expression=AK107493;TENOR=Os01t0858900-01;KEGG=Os01t0858900-01
Chr01	irgsp1_rep	five_prime_UTR	37133703	37133838	.	+	.	Parent=Os01t0858900-01
Chr01	irgsp1_rep	CDS	37133839	37135020	.	+	0	Parent=Os01t0858900-01
Chr01	irgsp1_rep	three_prime_UTR	37135021	37135319	.	+	.	Parent=Os01t0858900-01
Chr01	irgsp1_rep	mRNA	37146919	37149119	.	-	.	ID=Os01t0859100-01;Name=Os01t0859100-01;Locus_id=Os01g0859100;Note=Similar to WIP1 protein (Fragment).;Transcript_evidence=AK064334 (DDBJ%2C Best hit);ORF_evidence=Q5N7D6 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=002-107-G07;Expression=AK064334;TENOR=Os01t0859100-01;KEGG=Os01t0859100-01
Chr01	irgsp1_rep	five_prime_UTR	37148986	37149119	.	-	.	Parent=Os01t0859100-01
Chr01	irgsp1_rep	CDS	37148290	37148985	.	-	0	Parent=Os01t0859100-01
Chr01	irgsp1_rep	CDS	37147395	37147829	.	-	0	Parent=Os01t0859100-01
Chr01	irgsp1_rep	three_prime_UTR	37146919	37147394	.	-	.	Parent=Os01t0859100-01
Chr01	irgsp1_rep	mRNA	37154448	37157378	.	+	.	ID=Os01t0859200-01;Name=Os01t0859200-01;Locus_id=Os01g0859200;Note=Alpha/beta hydrolase fold-1 domain containing protein.;Transcript_evidence=AK061887 (DDBJ%2C Best hit);ORF_evidence=B6U0A3 (UniProt);NIAS_FLcDNA=001-041-F10;Expression=AK061887;TENOR=Os01t0859200-01;KEGG=Os01t0859200-01
Chr01	irgsp1_rep	five_prime_UTR	37154448	37154666	.	+	.	Parent=Os01t0859200-01
Chr01	irgsp1_rep	five_prime_UTR	37155753	37155778	.	+	.	Parent=Os01t0859200-01
Chr01	irgsp1_rep	CDS	37155779	37156036	.	+	0	Parent=Os01t0859200-01
Chr01	irgsp1_rep	CDS	37156133	37156344	.	+	0	Parent=Os01t0859200-01
Chr01	irgsp1_rep	CDS	37156428	37156692	.	+	1	Parent=Os01t0859200-01
Chr01	irgsp1_rep	CDS	37156840	37157148	.	+	0	Parent=Os01t0859200-01
Chr01	irgsp1_rep	three_prime_UTR	37157149	37157378	.	+	.	Parent=Os01t0859200-01
Chr01	irgsp1_rep	mRNA	37154474	37157448	.	+	.	ID=Os01t0859200-02;Name=Os01t0859200-02;Locus_id=Os01g0859200;Note=Conserved hypothetical protein.;Transcript_evidence=AK099121 (DDBJ%2C Best hit);ORF_evidence=B9EUS9 (UniProt);NIAS_FLcDNA=J023038D03;TENOR=Os01t0859200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	37154474	37154666	.	+	.	Parent=Os01t0859200-02
Chr01	irgsp1_rep	five_prime_UTR	37155753	37156036	.	+	.	Parent=Os01t0859200-02
Chr01	irgsp1_rep	five_prime_UTR	37156133	37156344	.	+	.	Parent=Os01t0859200-02
Chr01	irgsp1_rep	five_prime_UTR	37156428	37156664	.	+	.	Parent=Os01t0859200-02
Chr01	irgsp1_rep	CDS	37156665	37156692	.	+	0	Parent=Os01t0859200-02
Chr01	irgsp1_rep	CDS	37156840	37157240	.	+	2	Parent=Os01t0859200-02
Chr01	irgsp1_rep	three_prime_UTR	37157241	37157448	.	+	.	Parent=Os01t0859200-02
Chr01	irgsp1_rep	mRNA	37155671	37157353	.	+	.	ID=Os01t0859200-03;Name=Os01t0859200-03;Locus_id=Os01g0859200;Note=Alpha/beta hydrolase fold-1 domain containing protein.;Transcript_evidence=AK072912 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J023147H18;Expression=AK072912;TENOR=Os01t0859200-03;KEGG=Os01t0859200-03
Chr01	irgsp1_rep	five_prime_UTR	37155671	37155778	.	+	.	Parent=Os01t0859200-03
Chr01	irgsp1_rep	CDS	37155779	37156036	.	+	0	Parent=Os01t0859200-03
Chr01	irgsp1_rep	CDS	37156133	37156344	.	+	0	Parent=Os01t0859200-03
Chr01	irgsp1_rep	CDS	37156428	37156692	.	+	1	Parent=Os01t0859200-03
Chr01	irgsp1_rep	CDS	37156840	37157148	.	+	0	Parent=Os01t0859200-03
Chr01	irgsp1_rep	three_prime_UTR	37157149	37157353	.	+	.	Parent=Os01t0859200-03
Chr01	irgsp1_rep	mRNA	37174575	37176344	.	+	.	ID=Os01t0859300-01;Name=Os01t0859300-01;Locus_id=Os01g0859300;RAP-DB Gene Symbol Synonym(s)=OsABI5-2%2C OsABI5%2C OsOREB1%2C OsABF1;RAP-DB Gene Name Synonym(s)=ABA Insensitive 5%2C Abscisic acid insensitive 5;CGSNL Gene Symbol=ABI5;CGSNL Gene Name=ABA INSENSITIVE 5;Oryzabase Gene Symbol Synonym(s)=OsABI5%2C OsbZIP10%2C OsABF1%2C OREB1%2C OsABI5-1%2C OsABI5-2%2C OsOREB1%2C OREB1;Oryzabase Gene Name Synonym(s)=ABA Insensitive 5%2C bZIP-type transcription factor ABI5%2C bZIP transcription factors OsABI5%2C bZIP transcription factor 10%2C Abscisic acid insensitive 5;Note=bZIP transcription factor%2C Stress response and ABA signal transduction%2C Regulation of plant fertility;Transcript_evidence=AK070998 (truncated),EF199631;ORF_evidence=Q8RZ35;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700);InterPro=Transcription factor%2C Skn-1-like%2C DNA-binding domain superfamily (IPR008917),Basic-leucine zipper domain (IPR004827);NIAS_FLcDNA=J023078J23 (truncated);Manual Curation=January 24%2C 2018;Literature_PMID=23397192,18236009,17604002;Oryzabase=8259;Expression=AK070998;TENOR=Os01t0859300-01;KEGG=Os01t0859300-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	37174575	37174589	.	+	.	Parent=Os01t0859300-01
Chr01	irgsp1_rep	CDS	37174590	37175561	.	+	0	Parent=Os01t0859300-01
Chr01	irgsp1_rep	CDS	37175650	37175721	.	+	0	Parent=Os01t0859300-01
Chr01	irgsp1_rep	CDS	37175845	37175874	.	+	0	Parent=Os01t0859300-01
Chr01	irgsp1_rep	CDS	37176017	37176109	.	+	0	Parent=Os01t0859300-01
Chr01	irgsp1_rep	three_prime_UTR	37176110	37176344	.	+	.	Parent=Os01t0859300-01
Chr01	irgsp1_rep	mRNA	37174575	37176344	.	+	.	ID=Os01t0859300-02;Name=Os01t0859300-02;Locus_id=Os01g0859300;RAP-DB Gene Symbol Synonym(s)=OsABI5-1%2C OsABI5;RAP-DB Gene Name Synonym(s)=ABA Insensitive 5%2C Abscisic acid insensitive 5;CGSNL Gene Symbol=ABI5;CGSNL Gene Name=ABA INSENSITIVE 5;Oryzabase Gene Symbol Synonym(s)=OsABI5%2C OsbZIP10%2C OsABF1%2C OREB1%2C OsABI5-1%2C OsABI5-2%2C OsOREB1%2C OREB1;Oryzabase Gene Name Synonym(s)=ABA Insensitive 5%2C bZIP-type transcription factor ABI5%2C bZIP transcription factors OsABI5%2C bZIP transcription factor 10%2C Abscisic acid insensitive 5;Note=bZIP transcription factor%2C Stress response and ABA signal transduction%2C Regulation of plant fertility;Transcript_evidence=EF199630;ORF_evidence=A2TGS0;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700);InterPro=Transcription factor%2C Skn-1-like%2C DNA-binding domain superfamily (IPR008917),Basic-leucine zipper domain (IPR004827);Manual Curation=January 24%2C 2018;Literature_PMID=18236009,17604002;Oryzabase=8259;Subcellular location=nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	37174575	37174589	.	+	.	Parent=Os01t0859300-02
Chr01	irgsp1_rep	CDS	37174590	37175561	.	+	0	Parent=Os01t0859300-02
Chr01	irgsp1_rep	CDS	37175650	37175721	.	+	0	Parent=Os01t0859300-02
Chr01	irgsp1_rep	CDS	37176017	37176109	.	+	0	Parent=Os01t0859300-02
Chr01	irgsp1_rep	three_prime_UTR	37176110	37176344	.	+	.	Parent=Os01t0859300-02
Chr01	irgsp1_rep	mRNA	37177457	37182373	.	+	.	ID=Os01t0859400-01;Name=Os01t0859400-01;Locus_id=Os01g0859400;Oryzabase Gene Symbol Synonym(s)=OsPP16;Oryzabase Gene Name Synonym(s)=Protein phosphatase 16;Note=Protein-tyrosine phosphatase%2C dual specificity domain containing protein.;Transcript_evidence=AK071555 (DDBJ%2C Best hit);ORF_evidence=B6TTS7 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Biological Process: dephosphorylation (GO:0016311),Molecular Function: protein tyrosine/serine/threonine phosphatase activity (GO:0008138),Molecular Function: phosphatase activity (GO:0016791);InterPro=Dual specificity phosphatase%2C catalytic domain (IPR000340),Protein-tyrosine/Dual-specificity phosphatase (IPR000387);NIAS_FLcDNA=J023106K01;Oryzabase=18629;Expression=AK071555;TENOR=Os01t0859400-01;KEGG=Os01t0859400-01
Chr01	irgsp1_rep	five_prime_UTR	37177457	37177572	.	+	.	Parent=Os01t0859400-01
Chr01	irgsp1_rep	five_prime_UTR	37178074	37178120	.	+	.	Parent=Os01t0859400-01
Chr01	irgsp1_rep	CDS	37178121	37178664	.	+	0	Parent=Os01t0859400-01
Chr01	irgsp1_rep	CDS	37179217	37179452	.	+	2	Parent=Os01t0859400-01
Chr01	irgsp1_rep	three_prime_UTR	37179453	37181916	.	+	.	Parent=Os01t0859400-01
Chr01	irgsp1_rep	three_prime_UTR	37182019	37182373	.	+	.	Parent=Os01t0859400-01
Chr01	irgsp1_rep	mRNA	37177471	37179834	.	+	.	ID=Os01t0859400-02;Name=Os01t0859400-02;Locus_id=Os01g0859400;Oryzabase Gene Symbol Synonym(s)=OsPP16;Oryzabase Gene Name Synonym(s)=Protein phosphatase 16;Note=Protein-tyrosine phosphatase%2C dual specificity domain containing protein.;Transcript_evidence=AK072832 (DDBJ%2C Best hit);ORF_evidence=B6TTS7 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Biological Process: dephosphorylation (GO:0016311),Molecular Function: protein tyrosine/serine/threonine phosphatase activity (GO:0008138),Molecular Function: phosphatase activity (GO:0016791);InterPro=Dual specificity phosphatase%2C catalytic domain (IPR000340),Protein-tyrosine/Dual-specificity phosphatase (IPR000387);NIAS_FLcDNA=J023140D10;Oryzabase=18629;Expression=AK072832;TENOR=Os01t0859400-02;KEGG=Os01t0859400-02
Chr01	irgsp1_rep	five_prime_UTR	37177471	37177572	.	+	.	Parent=Os01t0859400-02
Chr01	irgsp1_rep	five_prime_UTR	37178074	37178120	.	+	.	Parent=Os01t0859400-02
Chr01	irgsp1_rep	CDS	37178121	37178664	.	+	0	Parent=Os01t0859400-02
Chr01	irgsp1_rep	CDS	37179217	37179452	.	+	2	Parent=Os01t0859400-02
Chr01	irgsp1_rep	three_prime_UTR	37179453	37179834	.	+	.	Parent=Os01t0859400-02
Chr01	irgsp1_rep	mRNA	37177490	37184746	.	+	.	ID=Os01t0859400-03;Name=Os01t0859400-03;Locus_id=Os01g0859400;Oryzabase Gene Symbol Synonym(s)=OsPP16;Oryzabase Gene Name Synonym(s)=Protein phosphatase 16;Note=Protein-tyrosine phosphatase%2C dual specificity domain containing protein.;Transcript_evidence=AK101903 (DDBJ%2C Best hit);ORF_evidence=B6TTS7 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Biological Process: dephosphorylation (GO:0016311),Molecular Function: protein tyrosine/serine/threonine phosphatase activity (GO:0008138),Molecular Function: phosphatase activity (GO:0016791);InterPro=Dual specificity phosphatase%2C catalytic domain (IPR000340),Protein-tyrosine/Dual-specificity phosphatase (IPR000387);NIAS_FLcDNA=J033071D07;Oryzabase=18629;Expression=AK101903;TENOR=Os01t0859400-03;KEGG=Os01t0859400-03
Chr01	irgsp1_rep	five_prime_UTR	37177490	37177572	.	+	.	Parent=Os01t0859400-03
Chr01	irgsp1_rep	five_prime_UTR	37178074	37178120	.	+	.	Parent=Os01t0859400-03
Chr01	irgsp1_rep	CDS	37178121	37178664	.	+	0	Parent=Os01t0859400-03
Chr01	irgsp1_rep	CDS	37179217	37179452	.	+	2	Parent=Os01t0859400-03
Chr01	irgsp1_rep	three_prime_UTR	37179453	37181916	.	+	.	Parent=Os01t0859400-03
Chr01	irgsp1_rep	three_prime_UTR	37182019	37182197	.	+	.	Parent=Os01t0859400-03
Chr01	irgsp1_rep	three_prime_UTR	37183788	37184746	.	+	.	Parent=Os01t0859400-03
Chr01	irgsp1_rep	mRNA	37181505	37188288	.	-	.	ID=Os01t0859500-01;Name=Os01t0859500-01;Locus_id=Os01g0859500;RAP-DB Gene Symbol Synonym(s)=OsLG2%2C rLG2;RAP-DB Gene Name Synonym(s)=LIGULELESS 2;CGSNL Gene Symbol=LG2;CGSNL Gene Name=LIGULELESS 2;Oryzabase Gene Symbol Synonym(s)=OsLG2%2C OsbZIP11%2C BZIP11;Oryzabase Gene Name Synonym(s)=OsLIGULELESS2%2C LIGULELESS2%2C OsLIGULELESS 2%2C b-ZIP transcription factor 11;Note=Ortholog of ZmLG2%2C bZIP transcriptional factor%2C Lamina joint positioning and differentiation;Transcript_evidence=AK101338;ORF_evidence=Q5N7C7;GO=Biological Process: transcription%2C DNA-templated (GO:0006351),Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA-binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Basic-leucine zipper domain (IPR004827),Transcription factor TGA like domain (IPR025422);NIAS_FLcDNA=J033034J12;Manual Curation=September 30%2C 2020;Literature_PMID=32985689,22353606;Oryzabase=11244;Expression=AK101338;TENOR=Os01t0859500-01;KEGG=Os01t0859500-01
Chr01	irgsp1_rep	five_prime_UTR	37188178	37188288	.	-	.	Parent=Os01t0859500-01
Chr01	irgsp1_rep	five_prime_UTR	37188066	37188082	.	-	.	Parent=Os01t0859500-01
Chr01	irgsp1_rep	CDS	37187923	37188065	.	-	0	Parent=Os01t0859500-01
Chr01	irgsp1_rep	CDS	37187193	37187317	.	-	1	Parent=Os01t0859500-01
Chr01	irgsp1_rep	CDS	37186695	37186795	.	-	2	Parent=Os01t0859500-01
Chr01	irgsp1_rep	CDS	37186147	37186416	.	-	0	Parent=Os01t0859500-01
Chr01	irgsp1_rep	CDS	37185128	37185175	.	-	0	Parent=Os01t0859500-01
Chr01	irgsp1_rep	CDS	37184922	37184981	.	-	0	Parent=Os01t0859500-01
Chr01	irgsp1_rep	CDS	37184761	37184838	.	-	0	Parent=Os01t0859500-01
Chr01	irgsp1_rep	CDS	37184596	37184641	.	-	0	Parent=Os01t0859500-01
Chr01	irgsp1_rep	CDS	37184197	37184468	.	-	2	Parent=Os01t0859500-01
Chr01	irgsp1_rep	CDS	37183866	37184105	.	-	0	Parent=Os01t0859500-01
Chr01	irgsp1_rep	CDS	37182040	37182182	.	-	0	Parent=Os01t0859500-01
Chr01	irgsp1_rep	CDS	37181654	37181747	.	-	1	Parent=Os01t0859500-01
Chr01	irgsp1_rep	three_prime_UTR	37181505	37181653	.	-	.	Parent=Os01t0859500-01
Chr01	irgsp1_rep	mRNA	37190435	37197744	.	-	.	ID=Os01t0859600-01;Name=Os01t0859600-01;Locus_id=Os01g0859600;Oryzabase Gene Symbol Synonym(s)=OsFbox049%2C OsFbox49%2C Os_F0364;Oryzabase Gene Name Synonym(s)=F-box protein 49;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK072151 (DDBJ%2C Best hit);ORF_evidence=NP_176890.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013132O07;Oryzabase=16848;Expression=AK072151;TENOR=Os01t0859600-01;KEGG=Os01t0859600-01
Chr01	irgsp1_rep	five_prime_UTR	37197063	37197744	.	-	.	Parent=Os01t0859600-01
Chr01	irgsp1_rep	CDS	37195809	37197062	.	-	0	Parent=Os01t0859600-01
Chr01	irgsp1_rep	three_prime_UTR	37195752	37195808	.	-	.	Parent=Os01t0859600-01
Chr01	irgsp1_rep	three_prime_UTR	37190435	37190892	.	-	.	Parent=Os01t0859600-01
Chr01	irgsp1_rep	mRNA	37198594	37198643	.	-	.	ID=Os01t0860050-00;Name=Os01t0860050-00;Locus_id=Os01g0860050;Note=Non-protein coding transcript.;Transcript_evidence=EU944121 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0860050-00
Chr01	irgsp1_rep	exon	37198594	37198643	.	-	.	Parent=Os01t0860050-00
Chr01	irgsp1_rep	mRNA	37231558	37234572	.	+	.	ID=Os01t0860300-01;Name=Os01t0860300-01;Locus_id=Os01g0860300;Note=Similar to Ribosomal protein L1.;Transcript_evidence=AK242874 (DDBJ%2C Best hit);ORF_evidence=B3TLQ8 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: large ribosomal subunit (GO:0015934),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L1 (IPR002143),Ribosomal protein L1%2C 2-layer alpha/beta-sandwich (IPR016094),Ribosomal protein L1%2C 3-layer alpha/beta-sandwich (IPR016095),Ribosomal protein L1%2C conserved site (IPR023673),Ribosomal protein L1%2C superfamily (IPR023674);NIAS_FLcDNA=J090077G21;TENOR=Os01t0860300-01;KEGG=Os01t0860300-01
Chr01	irgsp1_rep	five_prime_UTR	37231558	37231627	.	+	.	Parent=Os01t0860300-01
Chr01	irgsp1_rep	five_prime_UTR	37231721	37231747	.	+	.	Parent=Os01t0860300-01
Chr01	irgsp1_rep	CDS	37231748	37231752	.	+	0	Parent=Os01t0860300-01
Chr01	irgsp1_rep	CDS	37232374	37232593	.	+	1	Parent=Os01t0860300-01
Chr01	irgsp1_rep	CDS	37233088	37233249	.	+	0	Parent=Os01t0860300-01
Chr01	irgsp1_rep	CDS	37233739	37233948	.	+	0	Parent=Os01t0860300-01
Chr01	irgsp1_rep	CDS	37234322	37234375	.	+	0	Parent=Os01t0860300-01
Chr01	irgsp1_rep	three_prime_UTR	37234376	37234572	.	+	.	Parent=Os01t0860300-01
Chr01	irgsp1_rep	mRNA	37235781	37237206	.	+	.	ID=Os01t0860400-01;Name=Os01t0860400-01;Locus_id=Os01g0860400;Note=Similar to Acidic endochitinase precursor (EC 3.2.1.14).;Transcript_evidence=AK111415 (DDBJ%2C Best hit);ORF_evidence=Q19AL0 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 18%2C catalytic domain (IPR001223),Glycoside hydrolase%2C chitinase active site (IPR001579),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=002-182-G02;Expression=AK111415;TENOR=Os01t0860400-01;KEGG=Os01t0860400-01 (EC:3.2.1.14)
Chr01	irgsp1_rep	five_prime_UTR	37235781	37235851	.	+	.	Parent=Os01t0860400-01
Chr01	irgsp1_rep	CDS	37235852	37236342	.	+	0	Parent=Os01t0860400-01
Chr01	irgsp1_rep	CDS	37236423	37236825	.	+	1	Parent=Os01t0860400-01
Chr01	irgsp1_rep	three_prime_UTR	37236826	37237206	.	+	.	Parent=Os01t0860400-01
Chr01	irgsp1_rep	mRNA	37238917	37242334	.	-	.	ID=Os01t0860450-01;Name=Os01t0860450-01;Locus_id=Os01g0860450;Note=Hypothetical protein.;Transcript_evidence=AK119310 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-130-G06;TENOR=Os01t0860450-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	37240465	37242334	.	-	.	Parent=Os01t0860450-01
Chr01	irgsp1_rep	CDS	37240252	37240464	.	-	0	Parent=Os01t0860450-01
Chr01	irgsp1_rep	three_prime_UTR	37238917	37240251	.	-	.	Parent=Os01t0860450-01
Chr01	irgsp1_rep	mRNA	37239583	37240775	.	+	.	ID=Os01t0860500-02;Name=Os01t0860500-02;Locus_id=Os01g0860500;Oryzabase Gene Symbol Synonym(s)=C10501;Note=Similar to Hevamine A precursor [Includes: Chitinase (EC 3.2.1.14)%3B Lysozyme (EC 3.2.1.17)].;Transcript_evidence=AK058878 (DDBJ%2C Best hit),AK099172 (DDBJ%2C Best hit),AK103976 (DDBJ%2C Best hit),AK104120 (DDBJ%2C Best hit);ORF_evidence=O04139 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 18%2C catalytic domain (IPR001223),Glycoside hydrolase%2C chitinase active site (IPR001579),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-007-A04,J023091F16,001-016-F10,006-203-C02;Oryzabase=13798;Expression=AK058878;TENOR=Os01t0860500-02;KEGG=Os01t0860500-02 (EC:3.2.1.14)
Chr01	irgsp1_rep	five_prime_UTR	37239583	37239610	.	+	.	Parent=Os01t0860500-02
Chr01	irgsp1_rep	CDS	37239611	37240528	.	+	0	Parent=Os01t0860500-02
Chr01	irgsp1_rep	three_prime_UTR	37240529	37240775	.	+	.	Parent=Os01t0860500-02
Chr01	irgsp1_rep	mRNA	37241157	37242066	.	+	.	ID=Os01t0860601-01;Name=Os01t0860601-01;Locus_id=Os01g0860601;Note=Similar to Ferredoxin%2C root R-B1.;Transcript_evidence=AK069860 (DDBJ%2C Best hit);ORF_evidence=NP_001147289.1 (RefSeq);GO=Biological Process: electron transport chain (GO:0022900),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: iron-sulfur cluster binding (GO:0051536),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=Ferredoxin (IPR001041),2Fe-2S ferredoxin%2C iron-sulphur binding site (IPR006058),Ferredoxin [2Fe-2S]%2C plant (IPR010241),Beta-grasp fold%2C ferredoxin-type (IPR012675);NIAS_FLcDNA=J023035H08;Expression=AK069860;TENOR=Os01t0860601-01;KEGG=Os01t0860601-01
Chr01	irgsp1_rep	five_prime_UTR	37241157	37241451	.	+	.	Parent=Os01t0860601-01
Chr01	irgsp1_rep	CDS	37241452	37241949	.	+	0	Parent=Os01t0860601-01
Chr01	irgsp1_rep	three_prime_UTR	37241950	37242066	.	+	.	Parent=Os01t0860601-01
Chr01	irgsp1_rep	mRNA	37248455	37248873	.	+	.	ID=Os01t0860700-01;Name=Os01t0860700-01;Locus_id=Os01g0860700;Note=Conserved hypothetical protein.;Transcript_evidence=AK062402 (DDBJ%2C Best hit);ORF_evidence=Q10PF7 (UniProt);NIAS_FLcDNA=001-102-E04;TENOR=Os01t0860700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	37248455	37248456	.	+	.	Parent=Os01t0860700-01
Chr01	irgsp1_rep	CDS	37248457	37248774	.	+	0	Parent=Os01t0860700-01
Chr01	irgsp1_rep	three_prime_UTR	37248775	37248873	.	+	.	Parent=Os01t0860700-01
Chr01	irgsp1_rep	mRNA	37269811	37274701	.	+	.	ID=Os01t0860800-01;Name=Os01t0860800-01;Locus_id=Os01g0860800;Oryzabase Gene Name Synonym(s)="Glucan endo-1%2C 3-beta-glucosidase";Note=Glycoside hydrolase%2C family 17 protein.;Transcript_evidence=AK103072 (DDBJ%2C Best hit);ORF_evidence=B6T478 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J033118B10;Oryzabase=17622;Expression=AK103072;TENOR=Os01t0860800-01;KEGG=Os01t0860800-01
Chr01	irgsp1_rep	five_prime_UTR	37269811	37270161	.	+	.	Parent=Os01t0860800-01
Chr01	irgsp1_rep	CDS	37270162	37270225	.	+	0	Parent=Os01t0860800-01
Chr01	irgsp1_rep	CDS	37270955	37272087	.	+	2	Parent=Os01t0860800-01
Chr01	irgsp1_rep	three_prime_UTR	37272088	37274701	.	+	.	Parent=Os01t0860800-01
Chr01	irgsp1_rep	mRNA	37270005	37272158	.	+	.	ID=Os01t0860800-02;Name=Os01t0860800-02;Locus_id=Os01g0860800;Oryzabase Gene Name Synonym(s)="Glucan endo-1%2C 3-beta-glucosidase";Note=Glycoside hydrolase%2C family 17 protein.;Transcript_evidence=AK070331 (DDBJ%2C Best hit);ORF_evidence=B6T478 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J023049H08;Oryzabase=17622;Expression=AK070331;TENOR=Os01t0860800-02;KEGG=Os01t0860800-02
Chr01	irgsp1_rep	five_prime_UTR	37270005	37270161	.	+	.	Parent=Os01t0860800-02
Chr01	irgsp1_rep	CDS	37270162	37270225	.	+	0	Parent=Os01t0860800-02
Chr01	irgsp1_rep	CDS	37270955	37272087	.	+	2	Parent=Os01t0860800-02
Chr01	irgsp1_rep	three_prime_UTR	37272088	37272158	.	+	.	Parent=Os01t0860800-02
Chr01	irgsp1_rep	mRNA	37275755	37277138	.	-	.	ID=Os01t0860900-01;Name=Os01t0860900-01;Locus_id=Os01g0860900;Note=Conserved hypothetical protein.;Transcript_evidence=AK069754 (DDBJ%2C Best hit);ORF_evidence=A2ZZS9 (UniProt);NIAS_FLcDNA=J023028G22;Expression=AK069754;TENOR=Os01t0860900-01;KEGG=Os01t0860900-01
Chr01	irgsp1_rep	five_prime_UTR	37277041	37277138	.	-	.	Parent=Os01t0860900-01
Chr01	irgsp1_rep	CDS	37276623	37277040	.	-	0	Parent=Os01t0860900-01
Chr01	irgsp1_rep	CDS	37276138	37276469	.	-	2	Parent=Os01t0860900-01
Chr01	irgsp1_rep	three_prime_UTR	37275755	37276137	.	-	.	Parent=Os01t0860900-01
Chr01	irgsp1_rep	mRNA	37279687	37280386	.	-	.	ID=Os01t0861000-01;Name=Os01t0861000-01;Locus_id=Os01g0861000;Note=Conserved hypothetical protein.;Transcript_evidence=AK058707 (DDBJ%2C Best hit);ORF_evidence=A2ZZT0 (UniProt);NIAS_FLcDNA=001-019-C12;Expression=AK058707;TENOR=Os01t0861000-01;KEGG=Os01t0861000-01
Chr01	irgsp1_rep	five_prime_UTR	37280385	37280386	.	-	.	Parent=Os01t0861000-01
Chr01	irgsp1_rep	CDS	37280052	37280384	.	-	0	Parent=Os01t0861000-01
Chr01	irgsp1_rep	three_prime_UTR	37279687	37280051	.	-	.	Parent=Os01t0861000-01
Chr01	irgsp1_rep	mRNA	37299675	37300189	.	+	.	ID=Os01t0861400-00;Name=Os01t0861400-00;Locus_id=Os01g0861400;Note=Similar to Long cell-linked locus protein.;Transcript_evidence=FP096945 (DDBJ);ORF_evidence=Q946U8 (UniProt);TENOR=Os01t0861400-00
Chr01	irgsp1_rep	five_prime_UTR	37299675	37299712	.	+	.	Parent=Os01t0861400-00
Chr01	irgsp1_rep	CDS	37299713	37300189	.	+	0	Parent=Os01t0861400-00
Chr01	irgsp1_rep	mRNA	37303624	37307696	.	+	.	ID=Os01t0861700-00;Name=Os01t0861700-00;Locus_id=Os01g0861700;Oryzabase Gene Symbol Synonym(s)=OsHORZ1;Oryzabase Gene Name Synonym(s)=Haemerythrin motif-containing protein without RING- and Zn-finger 1;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5N7H0 (UniProt);InterPro=Haemerythrin/HHE cation-binding motif (IPR012312);Oryzabase=15056;TENOR=Os01t0861700-00;KEGG=Os01t0861700-00
Chr01	irgsp1_rep	CDS	37303624	37304329	.	+	0	Parent=Os01t0861700-00
Chr01	irgsp1_rep	CDS	37305245	37305399	.	+	2	Parent=Os01t0861700-00
Chr01	irgsp1_rep	CDS	37307337	37307696	.	+	0	Parent=Os01t0861700-00
Chr01	irgsp1_rep	mRNA	37308289	37310312	.	-	.	ID=Os01t0861900-01;Name=Os01t0861900-01;Locus_id=Os01g0861900;Note=Similar to transposon protein Mutator sub-class.;Transcript_evidence=AK105529 (DDBJ%2C Best hit);ORF_evidence=NP_001151279.1 (RefSeq);GO=Biological Process: alcohol metabolic process (GO:0006066),Molecular Function: alcohol O-acetyltransferase activity (GO:0004026);InterPro=Alcohol acetyltransferase (IPR010828);NIAS_FLcDNA=001-127-G08;Expression=AK105529;TENOR=Os01t0861900-01;KEGG=Os01t0861900-01
Chr01	irgsp1_rep	five_prime_UTR	37310133	37310312	.	-	.	Parent=Os01t0861900-01
Chr01	irgsp1_rep	CDS	37309311	37310132	.	-	0	Parent=Os01t0861900-01
Chr01	irgsp1_rep	CDS	37309041	37309212	.	-	0	Parent=Os01t0861900-01
Chr01	irgsp1_rep	CDS	37308438	37308916	.	-	2	Parent=Os01t0861900-01
Chr01	irgsp1_rep	three_prime_UTR	37308289	37308437	.	-	.	Parent=Os01t0861900-01
Chr01	irgsp1_rep	mRNA	37310842	37314676	.	-	.	ID=Os01t0862000-01;Name=Os01t0862000-01;Locus_id=Os01g0862000;Note=Alpha/beta hydrolase fold-1 domain containing protein.;Transcript_evidence=AK072680 (DDBJ%2C Best hit);ORF_evidence=NP_001147010.1 (RefSeq);NIAS_FLcDNA=J023135F13;Expression=AK072680;TENOR=Os01t0862000-01;KEGG=Os01t0862000-01
Chr01	irgsp1_rep	five_prime_UTR	37314639	37314676	.	-	.	Parent=Os01t0862000-01
Chr01	irgsp1_rep	CDS	37314356	37314638	.	-	0	Parent=Os01t0862000-01
Chr01	irgsp1_rep	CDS	37313983	37314221	.	-	2	Parent=Os01t0862000-01
Chr01	irgsp1_rep	CDS	37312443	37312481	.	-	0	Parent=Os01t0862000-01
Chr01	irgsp1_rep	three_prime_UTR	37312364	37312442	.	-	.	Parent=Os01t0862000-01
Chr01	irgsp1_rep	three_prime_UTR	37311506	37311646	.	-	.	Parent=Os01t0862000-01
Chr01	irgsp1_rep	three_prime_UTR	37310842	37311314	.	-	.	Parent=Os01t0862000-01
Chr01	irgsp1_rep	mRNA	37315305	37316227	.	+	.	ID=Os01t0862200-01;Name=Os01t0862200-01;Locus_id=Os01g0862200;Note=Conserved hypothetical protein.;Transcript_evidence=AK100818 (DDBJ%2C Best hit);ORF_evidence=A2WX82 (UniProt);NIAS_FLcDNA=J023122F03;TENOR=Os01t0862200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	37315305	37315384	.	+	.	Parent=Os01t0862200-01
Chr01	irgsp1_rep	CDS	37315385	37315678	.	+	0	Parent=Os01t0862200-01
Chr01	irgsp1_rep	three_prime_UTR	37315679	37315805	.	+	.	Parent=Os01t0862200-01
Chr01	irgsp1_rep	three_prime_UTR	37315897	37316227	.	+	.	Parent=Os01t0862200-01
Chr01	irgsp1_rep	mRNA	37315317	37316250	.	+	.	ID=Os01t0862200-02;Name=Os01t0862200-02;Locus_id=Os01g0862200;Note=Conserved hypothetical protein.;Transcript_evidence=AK059299 (DDBJ%2C Best hit);ORF_evidence=A2WX82 (UniProt);NIAS_FLcDNA=001-025-F01;Expression=AK059299;TENOR=Os01t0862200-02;KEGG=Os01t0862200-02
Chr01	irgsp1_rep	five_prime_UTR	37315317	37315384	.	+	.	Parent=Os01t0862200-02
Chr01	irgsp1_rep	CDS	37315385	37315657	.	+	0	Parent=Os01t0862200-02
Chr01	irgsp1_rep	CDS	37315752	37315805	.	+	0	Parent=Os01t0862200-02
Chr01	irgsp1_rep	CDS	37315897	37316130	.	+	0	Parent=Os01t0862200-02
Chr01	irgsp1_rep	three_prime_UTR	37316131	37316250	.	+	.	Parent=Os01t0862200-02
Chr01	irgsp1_rep	mRNA	37316220	37320517	.	-	.	ID=Os01t0862300-01;Name=Os01t0862300-01;Locus_id=Os01g0862300;Note=Similar to Sorting nexin 1.;Transcript_evidence=AK120353 (DDBJ%2C Best hit);ORF_evidence=Q70YZ8 (UniProt);GO=Biological Process: cell communication (GO:0007154),Molecular Function: protein binding (GO:0005515),Molecular Function: phosphatidylinositol binding (GO:0035091);InterPro=Phox homologous domain (IPR001683),Vps5 C-terminal (IPR015404);NIAS_FLcDNA=J013066C10;TENOR=Os01t0862300-01
Chr01	irgsp1_rep	five_prime_UTR	37320350	37320517	.	-	.	Parent=Os01t0862300-01
Chr01	irgsp1_rep	five_prime_UTR	37320158	37320182	.	-	.	Parent=Os01t0862300-01
Chr01	irgsp1_rep	CDS	37320014	37320157	.	-	0	Parent=Os01t0862300-01
Chr01	irgsp1_rep	CDS	37319127	37319262	.	-	0	Parent=Os01t0862300-01
Chr01	irgsp1_rep	CDS	37318854	37318987	.	-	2	Parent=Os01t0862300-01
Chr01	irgsp1_rep	CDS	37318224	37318295	.	-	0	Parent=Os01t0862300-01
Chr01	irgsp1_rep	CDS	37317914	37318073	.	-	0	Parent=Os01t0862300-01
Chr01	irgsp1_rep	CDS	37317451	37317584	.	-	2	Parent=Os01t0862300-01
Chr01	irgsp1_rep	CDS	37317279	37317347	.	-	0	Parent=Os01t0862300-01
Chr01	irgsp1_rep	CDS	37317089	37317168	.	-	0	Parent=Os01t0862300-01
Chr01	irgsp1_rep	CDS	37316781	37316841	.	-	1	Parent=Os01t0862300-01
Chr01	irgsp1_rep	CDS	37316478	37316687	.	-	0	Parent=Os01t0862300-01
Chr01	irgsp1_rep	three_prime_UTR	37316220	37316477	.	-	.	Parent=Os01t0862300-01
Chr01	irgsp1_rep	mRNA	37316226	37320481	.	-	.	ID=Os01t0862300-02;Name=Os01t0862300-02;Locus_id=Os01g0862300;Note=Similar to Sorting nexin 1.;Transcript_evidence=AK102304 (DDBJ%2C Best hit);ORF_evidence=Q70YZ8 (UniProt);GO=Biological Process: cell communication (GO:0007154),Molecular Function: protein binding (GO:0005515),Molecular Function: phosphatidylinositol binding (GO:0035091);InterPro=Phox homologous domain (IPR001683),Vps5 C-terminal (IPR015404);NIAS_FLcDNA=J033089O16;TENOR=Os01t0862300-02
Chr01	irgsp1_rep	five_prime_UTR	37320350	37320481	.	-	.	Parent=Os01t0862300-02
Chr01	irgsp1_rep	five_prime_UTR	37320158	37320182	.	-	.	Parent=Os01t0862300-02
Chr01	irgsp1_rep	CDS	37320014	37320157	.	-	0	Parent=Os01t0862300-02
Chr01	irgsp1_rep	CDS	37319127	37319262	.	-	0	Parent=Os01t0862300-02
Chr01	irgsp1_rep	CDS	37318854	37318987	.	-	2	Parent=Os01t0862300-02
Chr01	irgsp1_rep	CDS	37318224	37318295	.	-	0	Parent=Os01t0862300-02
Chr01	irgsp1_rep	CDS	37317914	37318073	.	-	0	Parent=Os01t0862300-02
Chr01	irgsp1_rep	CDS	37317451	37317584	.	-	2	Parent=Os01t0862300-02
Chr01	irgsp1_rep	CDS	37317279	37317347	.	-	0	Parent=Os01t0862300-02
Chr01	irgsp1_rep	CDS	37317089	37317168	.	-	0	Parent=Os01t0862300-02
Chr01	irgsp1_rep	CDS	37316781	37316841	.	-	1	Parent=Os01t0862300-02
Chr01	irgsp1_rep	CDS	37316478	37316687	.	-	0	Parent=Os01t0862300-02
Chr01	irgsp1_rep	three_prime_UTR	37316226	37316477	.	-	.	Parent=Os01t0862300-02
Chr01	irgsp1_rep	mRNA	37321659	37323263	.	-	.	ID=Os01t0862400-01;Name=Os01t0862400-01;Locus_id=Os01g0862400;Note=Hypothetical protein.;Transcript_evidence=AK108182 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-140-B02;Expression=AK108182;TENOR=Os01t0862400-01;KEGG=Os01t0862400-01
Chr01	irgsp1_rep	five_prime_UTR	37323096	37323263	.	-	.	Parent=Os01t0862400-01
Chr01	irgsp1_rep	five_prime_UTR	37322482	37322774	.	-	.	Parent=Os01t0862400-01
Chr01	irgsp1_rep	CDS	37321864	37322481	.	-	0	Parent=Os01t0862400-01
Chr01	irgsp1_rep	three_prime_UTR	37321659	37321863	.	-	.	Parent=Os01t0862400-01
Chr01	irgsp1_rep	mRNA	37321895	37323497	.	+	.	ID=Os01t0862500-01;Name=Os01t0862500-01;Locus_id=Os01g0862500;Note=Conserved hypothetical protein.;Transcript_evidence=AK120019 (DDBJ%2C Best hit);ORF_evidence=A2WX84 (UniProt);NIAS_FLcDNA=002-186-C01;TENOR=Os01t0862500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	37321895	37322026	.	+	.	Parent=Os01t0862500-01
Chr01	irgsp1_rep	five_prime_UTR	37322093	37322179	.	+	.	Parent=Os01t0862500-01
Chr01	irgsp1_rep	CDS	37322180	37322305	.	+	0	Parent=Os01t0862500-01
Chr01	irgsp1_rep	CDS	37322405	37322815	.	+	0	Parent=Os01t0862500-01
Chr01	irgsp1_rep	three_prime_UTR	37322816	37323497	.	+	.	Parent=Os01t0862500-01
Chr01	irgsp1_rep	mRNA	37323898	37324874	.	+	.	ID=Os01t0862600-01;Name=Os01t0862600-01;Locus_id=Os01g0862600;RAP-DB Gene Symbol Synonym(s)=OsS40-9;RAP-DB Gene Name Synonym(s)=S40 protein 9;CGSNL Gene Symbol=S40-9;CGSNL Gene Name=S40 PROTEIN 9;Oryzabase Gene Symbol Synonym(s)=OsS40-9;Oryzabase Gene Name Synonym(s)=S40 protein 9;Note=A member of S40 gene family%2C Leaf senescence;Transcript_evidence=AK108344;ORF_evidence=Q5N7G7;InterPro=Senescence regulator S40 (IPR007608);NIAS_FLcDNA=002-142-B04;Manual Curation=November 11%2C 2019;Literature_PMID=31046677;Oryzabase=22079;Expression=AK108344;TENOR=Os01t0862600-01;KEGG=Os01t0862600-01;Subcellular location=cytoplasm (GO:0005737) [several speckles]
Chr01	irgsp1_rep	five_prime_UTR	37323898	37323988	.	+	.	Parent=Os01t0862600-01
Chr01	irgsp1_rep	CDS	37323989	37324648	.	+	0	Parent=Os01t0862600-01
Chr01	irgsp1_rep	three_prime_UTR	37324649	37324874	.	+	.	Parent=Os01t0862600-01
Chr01	irgsp1_rep	mRNA	37334397	37336207	.	+	.	ID=Os01t0862800-01;Name=Os01t0862800-01;Locus_id=Os01g0862800;RAP-DB Gene Symbol Synonym(s)=ENAC1%2C NAC59;RAP-DB Gene Name Synonym(s)=NAC DOMAIN-CONTAINING PROTEIN 59%2C early NAC-domain protein induced by abiotic stress 1;CGSNL Gene Symbol=NAC59;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 59;Oryzabase Gene Symbol Synonym(s)=ONAC059%2C ONAC59;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 059%2C NAC domain-containing protein 59;Note=NAC (NAM ATAF1/2 CUC2) transcription factor%2C Early and transient regulator of abiotic stress responses;Transcript_evidence=AK071274;ORF_evidence=Q94CW0;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=NAC domain (IPR003441);NIAS_FLcDNA=J023087C18;Manual Curation=May 1%2C 2017;Literature_PMID=22161313;Oryzabase=11489;Expression=AK071274;TENOR=Os01t0862800-01;KEGG=Os01t0862800-01;Subcellular location=nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	37334397	37334515	.	+	.	Parent=Os01t0862800-01
Chr01	irgsp1_rep	CDS	37334516	37334681	.	+	0	Parent=Os01t0862800-01
Chr01	irgsp1_rep	CDS	37334766	37335103	.	+	2	Parent=Os01t0862800-01
Chr01	irgsp1_rep	CDS	37335584	37335850	.	+	0	Parent=Os01t0862800-01
Chr01	irgsp1_rep	three_prime_UTR	37335851	37336207	.	+	.	Parent=Os01t0862800-01
Chr01	irgsp1_rep	mRNA	37334518	37335105	.	-	.	ID=Os01t0862850-00;Name=Os01t0862850-00;Locus_id=Os01g0862850;Note=Hypothetical protein.;Transcript_evidence=FP093663 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0862850-00
Chr01	irgsp1_rep	five_prime_UTR	37335092	37335105	.	-	.	Parent=Os01t0862850-00
Chr01	irgsp1_rep	CDS	37334678	37335091	.	-	0	Parent=Os01t0862850-00
Chr01	irgsp1_rep	three_prime_UTR	37334518	37334677	.	-	.	Parent=Os01t0862850-00
Chr01	irgsp1_rep	mRNA	37349398	37352086	.	-	.	ID=Os01t0863100-01;Name=Os01t0863100-01;Locus_id=Os01g0863100;Note=Similar to H0423H10.6 protein.;Transcript_evidence=AK063301 (DDBJ%2C Best hit);ORF_evidence=Q9FSQ7 (UniProt);NIAS_FLcDNA=001-113-F03;TENOR=Os01t0863100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	37350132	37352086	.	-	.	Parent=Os01t0863100-01
Chr01	irgsp1_rep	CDS	37349967	37350131	.	-	0	Parent=Os01t0863100-01
Chr01	irgsp1_rep	three_prime_UTR	37349398	37349966	.	-	.	Parent=Os01t0863100-01
Chr01	irgsp1_rep	mRNA	37353469	37356150	.	-	.	ID=Os01t0863166-01;Name=Os01t0863166-01;Locus_id=Os01g0863166;Note=Conserved hypothetical protein.;Transcript_evidence=AK241224 (DDBJ%2C Best hit);ORF_evidence=B9FZE1 (UniProt);NIAS_FLcDNA=J065124H21;TENOR=Os01t0863166-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	37355272	37356150	.	-	.	Parent=Os01t0863166-01
Chr01	irgsp1_rep	five_prime_UTR	37355015	37355089	.	-	.	Parent=Os01t0863166-01
Chr01	irgsp1_rep	CDS	37354808	37355014	.	-	0	Parent=Os01t0863166-01
Chr01	irgsp1_rep	CDS	37354419	37354427	.	-	0	Parent=Os01t0863166-01
Chr01	irgsp1_rep	three_prime_UTR	37353469	37354418	.	-	.	Parent=Os01t0863166-01
Chr01	irgsp1_rep	mRNA	37358205	37359556	.	+	.	ID=Os01t0863300-01;Name=Os01t0863300-01;Locus_id=Os01g0863300;Note=Similar to MCB2 protein.;Transcript_evidence=AK111571 (DDBJ%2C Best hit);ORF_evidence=NP_001151615.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J013071A13;Expression=AK111571;TENOR=Os01t0863300-01;KEGG=Os01t0863300-01
Chr01	irgsp1_rep	five_prime_UTR	37358205	37358393	.	+	.	Parent=Os01t0863300-01
Chr01	irgsp1_rep	CDS	37358394	37358615	.	+	0	Parent=Os01t0863300-01
Chr01	irgsp1_rep	CDS	37358691	37358731	.	+	0	Parent=Os01t0863300-01
Chr01	irgsp1_rep	CDS	37358982	37359165	.	+	1	Parent=Os01t0863300-01
Chr01	irgsp1_rep	three_prime_UTR	37359166	37359556	.	+	.	Parent=Os01t0863300-01
Chr01	irgsp1_rep	mRNA	37360416	37363396	.	-	.	ID=Os01t0863400-01;Name=Os01t0863400-01;Locus_id=Os01g0863400;Note=Hypothetical protein.;Transcript_evidence=AK068967 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J023002B20;Expression=AK068967;TENOR=Os01t0863400-01;KEGG=Os01t0863400-01
Chr01	irgsp1_rep	five_prime_UTR	37363361	37363396	.	-	.	Parent=Os01t0863400-01
Chr01	irgsp1_rep	CDS	37363249	37363360	.	-	0	Parent=Os01t0863400-01
Chr01	irgsp1_rep	CDS	37360482	37361266	.	-	2	Parent=Os01t0863400-01
Chr01	irgsp1_rep	three_prime_UTR	37360416	37360481	.	-	.	Parent=Os01t0863400-01
Chr01	irgsp1_rep	mRNA	37365499	37366446	.	+	.	ID=Os01t0863500-01;Name=Os01t0863500-01;Locus_id=Os01g0863500;RAP-DB Gene Symbol Synonym(s)=REL1;RAP-DB Gene Name Synonym(s)=Rolled and Erect Leaf 1;CGSNL Gene Symbol=REL1;CGSNL Gene Name=ROLLED AND ERECT LEAF 1;Oryzabase Gene Symbol Synonym(s)=OsREL1;Oryzabase Gene Name Synonym(s)=rolled and erect leaf 1%2C rolled and erect 1;Note=Control of leaf rolling and bending;Transcript_evidence=AK111023;ORF_evidence=Q94CV6;NIAS_FLcDNA=002-174-H01;Manual Curation=May 27%2C 2016;Literature_PMID=26142419;Oryzabase=22360;Expression=AK111023;TENOR=Os01t0863500-01;KEGG=Os01t0863500-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	37365499	37365509	.	+	.	Parent=Os01t0863500-01
Chr01	irgsp1_rep	five_prime_UTR	37365679	37365713	.	+	.	Parent=Os01t0863500-01
Chr01	irgsp1_rep	CDS	37365714	37366103	.	+	0	Parent=Os01t0863500-01
Chr01	irgsp1_rep	three_prime_UTR	37366104	37366446	.	+	.	Parent=Os01t0863500-01
Chr01	irgsp1_rep	mRNA	37381402	37382273	.	+	.	ID=Os01t0863800-00;Name=Os01t0863800-00;Locus_id=Os01g0863800;Oryzabase Gene Symbol Synonym(s)=OsOFP5%2C OsOFP07;Oryzabase Gene Name Synonym(s)=OVATE family protein 5%2C ovate family protein 7%2C OVATE-domain containing protein 7;Note=Protein of unknown function DUF623%2C plant domain containing protein.;Transcript_evidence=FP100668 (DDBJ);ORF_evidence=B6TL44 (UniProt);InterPro=Domain of unknown function DUF623 (IPR006458);Oryzabase=18301;TENOR=Os01t0863800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	37381402	37381479	.	+	.	Parent=Os01t0863800-00
Chr01	irgsp1_rep	CDS	37381480	37382214	.	+	0	Parent=Os01t0863800-00
Chr01	irgsp1_rep	three_prime_UTR	37382215	37382273	.	+	.	Parent=Os01t0863800-00
Chr01	irgsp1_rep	mRNA	37396215	37397433	.	-	.	ID=Os01t0864000-01;Name=Os01t0864000-01;Locus_id=Os01g0864000;RAP-DB Gene Symbol Synonym(s)=OsOFP8;RAP-DB Gene Name Synonym(s)=OVATE family protein 8;Oryzabase Gene Symbol Synonym(s)=OsOFP30%2C OsOFP08%2C OsOFP8%2C OFP8%2C OFP30;Oryzabase Gene Name Synonym(s)=OVATE family protein 30%2C ovate family protein 8%2C OVATE-domain containing protein 8;Note=Plant-specific transcription factor%2C A member of OVATE family protein%2C Positive mediation of brassinosteroid signaling%2C Plant growth and development;Transcript_evidence=AK106759;ORF_evidence=Q94CV1;InterPro=Ovate  protein family%2C C-terminal (IPR006458);NIAS_FLcDNA=002-115-D10;Manual Curation=June 26%2C 2017;Literature_PMID=27332964;Oryzabase=18326;TENOR=Os01t0864000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	37397265	37397433	.	-	.	Parent=Os01t0864000-01
Chr01	irgsp1_rep	CDS	37396578	37397264	.	-	0	Parent=Os01t0864000-01
Chr01	irgsp1_rep	three_prime_UTR	37396215	37396577	.	-	.	Parent=Os01t0864000-01
Chr01	irgsp1_rep	mRNA	37396482	37398123	.	+	.	ID=Os01t0864100-01;Name=Os01t0864100-01;Locus_id=Os01g0864100;Note=Hypothetical protein.;Transcript_evidence=AK064616 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-113-C05;Expression=AK064616;TENOR=Os01t0864100-01;KEGG=Os01t0864100-01
Chr01	irgsp1_rep	five_prime_UTR	37396482	37396688	.	+	.	Parent=Os01t0864100-01
Chr01	irgsp1_rep	CDS	37396689	37397249	.	+	0	Parent=Os01t0864100-01
Chr01	irgsp1_rep	three_prime_UTR	37397250	37398123	.	+	.	Parent=Os01t0864100-01
Chr01	irgsp1_rep	mRNA	37403082	37403883	.	+	.	ID=Os01t0864200-01;Name=Os01t0864200-01;Locus_id=Os01g0864200;Note=Conserved hypothetical protein.;Transcript_evidence=AK241381 (DDBJ%2C Best hit);ORF_evidence=NP_001044893.1 (RefSeq);NIAS_FLcDNA=J065155M15;TENOR=Os01t0864200-01;KEGG=Os01t0864200-01
Chr01	irgsp1_rep	five_prime_UTR	37403082	37403245	.	+	.	Parent=Os01t0864200-01
Chr01	irgsp1_rep	CDS	37403246	37403701	.	+	0	Parent=Os01t0864200-01
Chr01	irgsp1_rep	three_prime_UTR	37403702	37403883	.	+	.	Parent=Os01t0864200-01
Chr01	irgsp1_rep	mRNA	37406262	37407241	.	-	.	ID=Os01t0864300-01;Name=Os01t0864300-01;Locus_id=Os01g0864300;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK063651 (DDBJ%2C Best hit);ORF_evidence=Q94CU9 (UniProt);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=001-119-B02;Expression=AK063651;TENOR=Os01t0864300-01;KEGG=Os01t0864300-01
Chr01	irgsp1_rep	five_prime_UTR	37407137	37407241	.	-	.	Parent=Os01t0864300-01
Chr01	irgsp1_rep	CDS	37406411	37407136	.	-	0	Parent=Os01t0864300-01
Chr01	irgsp1_rep	three_prime_UTR	37406262	37406410	.	-	.	Parent=Os01t0864300-01
Chr01	irgsp1_rep	mRNA	37409701	37411461	.	-	.	ID=Os01t0864401-00;Name=Os01t0864401-00;Locus_id=Os01g0864401;Note=Hypothetical conserved gene.;Transcript_evidence=CT833668 (DDBJ%2C Secondary hit);ORF_evidence=Q5N7G0 (UniProt);TENOR=Os01t0864401-00;KEGG=Os01t0864401-00
Chr01	irgsp1_rep	five_prime_UTR	37411460	37411461	.	-	.	Parent=Os01t0864401-00
Chr01	irgsp1_rep	CDS	37411159	37411459	.	-	0	Parent=Os01t0864401-00
Chr01	irgsp1_rep	CDS	37410492	37410508	.	-	2	Parent=Os01t0864401-00
Chr01	irgsp1_rep	three_prime_UTR	37410342	37410491	.	-	.	Parent=Os01t0864401-00
Chr01	irgsp1_rep	three_prime_UTR	37410015	37410182	.	-	.	Parent=Os01t0864401-00
Chr01	irgsp1_rep	three_prime_UTR	37409701	37409946	.	-	.	Parent=Os01t0864401-00
Chr01	irgsp1_rep	mRNA	37412047	37413011	.	-	.	ID=Os01t0864500-01;Name=Os01t0864500-01;Locus_id=Os01g0864500;Oryzabase Gene Symbol Synonym(s)=OsSDS1;Oryzabase Gene Name Synonym(s)=salt and drought sensitive gene 1;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK068115 (DDBJ%2C Best hit);ORF_evidence=A2WX99 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Forkhead-associated (FHA) domain (IPR000253),Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=J013135B08;Oryzabase=15221;Expression=AK068115;TENOR=Os01t0864500-01;KEGG=Os01t0864500-01
Chr01	irgsp1_rep	five_prime_UTR	37412941	37413011	.	-	.	Parent=Os01t0864500-01
Chr01	irgsp1_rep	CDS	37412224	37412940	.	-	0	Parent=Os01t0864500-01
Chr01	irgsp1_rep	three_prime_UTR	37412047	37412223	.	-	.	Parent=Os01t0864500-01
Chr01	irgsp1_rep	mRNA	37415178	37415459	.	-	.	ID=Os01t0864566-00;Name=Os01t0864566-00;Locus_id=Os01g0864566;Note=Hypothetical conserved gene.;Transcript_evidence=EU942030 (DDBJ);ORF_evidence=B6TW49 (UniProt);TENOR=Os01t0864566-00;KEGG=Os01t0864566-00
Chr01	irgsp1_rep	five_prime_UTR	37415406	37415459	.	-	.	Parent=Os01t0864566-00
Chr01	irgsp1_rep	CDS	37415178	37415405	.	-	0	Parent=Os01t0864566-00
Chr01	irgsp1_rep	mRNA	37417036	37417649	.	-	.	ID=Os01t0864700-00;Name=Os01t0864700-00;Locus_id=Os01g0864700;Oryzabase Gene Symbol Synonym(s)=OsNek5;Oryzabase Gene Name Synonym(s)=NIMA-related kinase 5;Note=Similar to Serine/threonine-protein kinase Nek5.;Transcript_evidence=CT834975 (DDBJ%2C Best hit);ORF_evidence=Q94CU5 (UniProt);Oryzabase=9929;TENOR=Os01t0864700-00;KEGG=Os01t0864700-00
Chr01	irgsp1_rep	CDS	37417302	37417649	.	-	0	Parent=Os01t0864700-00
Chr01	irgsp1_rep	three_prime_UTR	37417036	37417301	.	-	.	Parent=Os01t0864700-00
Chr01	irgsp1_rep	mRNA	37440679	37444669	.	-	.	ID=Os01t0865100-01;Name=Os01t0865100-01;Locus_id=Os01g0865100;CGSNL Gene Symbol=UO;Oryzabase Gene Symbol Synonym(s)=OsUO;Oryzabase Gene Name Synonym(s)=uricase%2C urate oxidase;Note=Similar to Uricase (Fragment).;Transcript_evidence=AK071410 (DDBJ%2C Best hit);ORF_evidence=A2WXA2 (UniProt);InterPro=Uricase (IPR002042);NIAS_FLcDNA=J023089L18;Oryzabase=22918;Expression=AK071410;TENOR=Os01t0865100-01;KEGG=Os01t0865100-01 (EC:1.7.3.3)
Chr01	irgsp1_rep	five_prime_UTR	37444559	37444669	.	-	.	Parent=Os01t0865100-01
Chr01	irgsp1_rep	CDS	37444358	37444558	.	-	0	Parent=Os01t0865100-01
Chr01	irgsp1_rep	CDS	37444186	37444278	.	-	0	Parent=Os01t0865100-01
Chr01	irgsp1_rep	CDS	37444015	37444090	.	-	0	Parent=Os01t0865100-01
Chr01	irgsp1_rep	CDS	37442688	37442797	.	-	2	Parent=Os01t0865100-01
Chr01	irgsp1_rep	CDS	37442277	37442368	.	-	0	Parent=Os01t0865100-01
Chr01	irgsp1_rep	CDS	37441818	37441991	.	-	1	Parent=Os01t0865100-01
Chr01	irgsp1_rep	CDS	37441616	37441709	.	-	1	Parent=Os01t0865100-01
Chr01	irgsp1_rep	CDS	37440900	37440983	.	-	0	Parent=Os01t0865100-01
Chr01	irgsp1_rep	three_prime_UTR	37440679	37440899	.	-	.	Parent=Os01t0865100-01
Chr01	irgsp1_rep	mRNA	37440434	37444627	.	-	.	ID=Os01t0865100-02;Name=Os01t0865100-02;Locus_id=Os01g0865100;CGSNL Gene Symbol=UO;Oryzabase Gene Symbol Synonym(s)=OsUO;Oryzabase Gene Name Synonym(s)=uricase%2C urate oxidase;Note=Similar to Uricase.;Transcript_evidence=AK065779 (DDBJ%2C Best hit);ORF_evidence=A2WXA2 (UniProt);InterPro=Uricase (IPR002042);NIAS_FLcDNA=J013039E23;Oryzabase=22918;Expression=AK065779;TENOR=Os01t0865100-02;KEGG=Os01t0865100-02 (EC:1.7.3.3)
Chr01	irgsp1_rep	five_prime_UTR	37444559	37444627	.	-	.	Parent=Os01t0865100-02
Chr01	irgsp1_rep	CDS	37444358	37444558	.	-	0	Parent=Os01t0865100-02
Chr01	irgsp1_rep	CDS	37444186	37444278	.	-	0	Parent=Os01t0865100-02
Chr01	irgsp1_rep	CDS	37444015	37444090	.	-	0	Parent=Os01t0865100-02
Chr01	irgsp1_rep	CDS	37442607	37442797	.	-	2	Parent=Os01t0865100-02
Chr01	irgsp1_rep	three_prime_UTR	37442247	37442606	.	-	.	Parent=Os01t0865100-02
Chr01	irgsp1_rep	three_prime_UTR	37440434	37440520	.	-	.	Parent=Os01t0865100-02
Chr01	irgsp1_rep	mRNA	37451411	37452954	.	-	.	ID=Os01t0865400-01;Name=Os01t0865400-01;Locus_id=Os01g0865400;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK068362 (DDBJ%2C Best hit);ORF_evidence=NP_001147674.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J013145L16;Expression=AK068362;TENOR=Os01t0865400-01;KEGG=Os01t0865400-01
Chr01	irgsp1_rep	five_prime_UTR	37452932	37452954	.	-	.	Parent=Os01t0865400-01
Chr01	irgsp1_rep	CDS	37451510	37452931	.	-	0	Parent=Os01t0865400-01
Chr01	irgsp1_rep	three_prime_UTR	37451411	37451509	.	-	.	Parent=Os01t0865400-01
Chr01	irgsp1_rep	mRNA	37457525	37463751	.	+	.	ID=Os01t0865600-01;Name=Os01t0865600-01;Locus_id=Os01g0865600;Oryzabase Gene Symbol Synonym(s)=OsbHLH149%2C bHLH149%2C DLN30%2C OsDLN30%2C OsMYC4%2C MYC4;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 149%2C DLN repressor 30%2C DLN motif protein 30%2C Myelocytomatosis oncogene transcription factor 4;Note=Basic helix-loop-helix dimerisation region bHLH domain containing protein.;Transcript_evidence=AK099677 (DDBJ%2C Best hit);ORF_evidence=A2WXA5 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J013070F08;Oryzabase=15424;Expression=AK099677;TENOR=Os01t0865600-01;KEGG=Os01t0865600-01
Chr01	irgsp1_rep	five_prime_UTR	37457525	37457744	.	+	.	Parent=Os01t0865600-01
Chr01	irgsp1_rep	CDS	37457745	37457854	.	+	0	Parent=Os01t0865600-01
Chr01	irgsp1_rep	CDS	37458163	37458402	.	+	1	Parent=Os01t0865600-01
Chr01	irgsp1_rep	CDS	37458506	37458587	.	+	1	Parent=Os01t0865600-01
Chr01	irgsp1_rep	CDS	37458900	37458941	.	+	0	Parent=Os01t0865600-01
Chr01	irgsp1_rep	CDS	37459026	37459085	.	+	0	Parent=Os01t0865600-01
Chr01	irgsp1_rep	CDS	37459761	37461404	.	+	0	Parent=Os01t0865600-01
Chr01	irgsp1_rep	CDS	37461504	37461605	.	+	0	Parent=Os01t0865600-01
Chr01	irgsp1_rep	CDS	37462587	37462727	.	+	0	Parent=Os01t0865600-01
Chr01	irgsp1_rep	CDS	37462818	37462943	.	+	0	Parent=Os01t0865600-01
Chr01	irgsp1_rep	CDS	37463117	37463284	.	+	0	Parent=Os01t0865600-01
Chr01	irgsp1_rep	three_prime_UTR	37463285	37463751	.	+	.	Parent=Os01t0865600-01
Chr01	irgsp1_rep	mRNA	37457573	37463375	.	+	.	ID=Os01t0865600-02;Name=Os01t0865600-02;Locus_id=Os01g0865600;Oryzabase Gene Symbol Synonym(s)=OsbHLH149%2C bHLH149%2C DLN30%2C OsDLN30%2C OsMYC4%2C MYC4;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 149%2C DLN repressor 30%2C DLN motif protein 30%2C Myelocytomatosis oncogene transcription factor 4;Note=Basic helix-loop-helix dimerisation region bHLH domain containing protein.;Transcript_evidence=AK068033 (DDBJ%2C Best hit);ORF_evidence=A2WXA5 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J013129B18;Oryzabase=15424;Expression=AK068033;TENOR=Os01t0865600-02;KEGG=Os01t0865600-02
Chr01	irgsp1_rep	five_prime_UTR	37457573	37457744	.	+	.	Parent=Os01t0865600-02
Chr01	irgsp1_rep	CDS	37457745	37457854	.	+	0	Parent=Os01t0865600-02
Chr01	irgsp1_rep	CDS	37458163	37458402	.	+	1	Parent=Os01t0865600-02
Chr01	irgsp1_rep	CDS	37458506	37458587	.	+	1	Parent=Os01t0865600-02
Chr01	irgsp1_rep	CDS	37458900	37458941	.	+	0	Parent=Os01t0865600-02
Chr01	irgsp1_rep	CDS	37459026	37459085	.	+	0	Parent=Os01t0865600-02
Chr01	irgsp1_rep	CDS	37459761	37461404	.	+	0	Parent=Os01t0865600-02
Chr01	irgsp1_rep	CDS	37461504	37461605	.	+	0	Parent=Os01t0865600-02
Chr01	irgsp1_rep	CDS	37462587	37462727	.	+	0	Parent=Os01t0865600-02
Chr01	irgsp1_rep	CDS	37462818	37462943	.	+	0	Parent=Os01t0865600-02
Chr01	irgsp1_rep	CDS	37463117	37463284	.	+	0	Parent=Os01t0865600-02
Chr01	irgsp1_rep	three_prime_UTR	37463285	37463375	.	+	.	Parent=Os01t0865600-02
Chr01	irgsp1_rep	mRNA	37464074	37465567	.	-	.	ID=Os01t0865700-00;Name=Os01t0865700-00;Locus_id=Os01g0865700;Oryzabase Gene Symbol Synonym(s)=OsPUB31;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 31%2C U-box protein 31;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK356997 (DDBJ);ORF_evidence=Q259M5 (UniProt);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),U box domain (IPR003613),Armadillo-like helical (IPR011989),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Armadillo-type fold (IPR016024);Oryzabase=17823;TENOR=Os01t0865700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	37465494	37465567	.	-	.	Parent=Os01t0865700-00
Chr01	irgsp1_rep	CDS	37464270	37465493	.	-	0	Parent=Os01t0865700-00
Chr01	irgsp1_rep	three_prime_UTR	37464074	37464269	.	-	.	Parent=Os01t0865700-00
Chr01	irgsp1_rep	mRNA	37472239	37473548	.	-	.	ID=Os01t0865800-00;Name=Os01t0865800-00;Locus_id=Os01g0865800;Oryzabase Gene Symbol Synonym(s)=OsDof1%2C Dof1%2C OsDof-1;Oryzabase Gene Name Synonym(s)=Dof zinc factor 1%2C Dof transcription factor 1;Note=Similar to AOBP (Ascorbate oxidase promoter-binding protein).;Transcript_evidence=AK373527 (DDBJ);ORF_evidence=NP_001044901.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C Dof-type (IPR003851);Oryzabase=20260;TENOR=Os01t0865800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	37473396	37473548	.	-	.	Parent=Os01t0865800-00
Chr01	irgsp1_rep	CDS	37472406	37473395	.	-	0	Parent=Os01t0865800-00
Chr01	irgsp1_rep	three_prime_UTR	37472239	37472405	.	-	.	Parent=Os01t0865800-00
Chr01	irgsp1_rep	mRNA	37505302	37505890	.	-	.	ID=Os01t0865900-00;Name=Os01t0865900-00;Locus_id=Os01g0865900;Note=Hypothetical protein.;Transcript_evidence=BT088253 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0865900-00
Chr01	irgsp1_rep	five_prime_UTR	37505890	37505890	.	-	.	Parent=Os01t0865900-00
Chr01	irgsp1_rep	CDS	37505302	37505889	.	-	0	Parent=Os01t0865900-00
Chr01	irgsp1_rep	mRNA	37505155	37506089	.	+	.	ID=Os01t0866000-01;Name=Os01t0866000-01;Locus_id=Os01g0866000;Note=Similar to E3 ubiquitin ligase EL5 (EC 6.3.2.-).;Transcript_evidence=AK108924 (DDBJ%2C Best hit);ORF_evidence=NP_001147605.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=002-152-H11;Expression=AK108924;TENOR=Os01t0866000-01;KEGG=Os01t0866000-01
Chr01	irgsp1_rep	five_prime_UTR	37505155	37505253	.	+	.	Parent=Os01t0866000-01
Chr01	irgsp1_rep	CDS	37505254	37505895	.	+	0	Parent=Os01t0866000-01
Chr01	irgsp1_rep	three_prime_UTR	37505896	37506089	.	+	.	Parent=Os01t0866000-01
Chr01	irgsp1_rep	mRNA	37509885	37513263	.	+	.	ID=Os01t0866100-01;Name=Os01t0866100-01;Locus_id=Os01g0866100;Oryzabase Gene Symbol Synonym(s)=RAc7;Oryzabase Gene Name Synonym(s)=Actin 7;Note=Similar to Actin 4.;Transcript_evidence=AK068991 (DDBJ%2C Best hit);ORF_evidence=P0C540 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Actin-like (IPR004000),Actin%2C conserved site (IPR004001),Actin/actin-like conserved site (IPR020902);NIAS_FLcDNA=J013170J08;Oryzabase=14441;Expression=AK068991;TENOR=Os01t0866100-01;KEGG=Os01t0866100-01
Chr01	irgsp1_rep	five_prime_UTR	37509885	37510019	.	+	.	Parent=Os01t0866100-01
Chr01	irgsp1_rep	five_prime_UTR	37510903	37510915	.	+	.	Parent=Os01t0866100-01
Chr01	irgsp1_rep	CDS	37510916	37510972	.	+	0	Parent=Os01t0866100-01
Chr01	irgsp1_rep	CDS	37511098	37511451	.	+	0	Parent=Os01t0866100-01
Chr01	irgsp1_rep	CDS	37513023	37513223	.	+	0	Parent=Os01t0866100-01
Chr01	irgsp1_rep	three_prime_UTR	37513224	37513263	.	+	.	Parent=Os01t0866100-01
Chr01	irgsp1_rep	mRNA	37510909	37512831	.	-	.	ID=Os01t0866133-00;Name=Os01t0866133-00;Locus_id=Os01g0866133;Note=Hypothetical gene.;Transcript_evidence=BT018641 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0866133-00;KEGG=Os01t0866133-00
Chr01	irgsp1_rep	five_prime_UTR	37512815	37512831	.	-	.	Parent=Os01t0866133-00
Chr01	irgsp1_rep	CDS	37512748	37512814	.	-	0	Parent=Os01t0866133-00
Chr01	irgsp1_rep	CDS	37511620	37512209	.	-	2	Parent=Os01t0866133-00
Chr01	irgsp1_rep	CDS	37511423	37511503	.	-	0	Parent=Os01t0866133-00
Chr01	irgsp1_rep	three_prime_UTR	37511096	37511422	.	-	.	Parent=Os01t0866133-00
Chr01	irgsp1_rep	three_prime_UTR	37510909	37510970	.	-	.	Parent=Os01t0866133-00
Chr01	irgsp1_rep	mRNA	37513878	37514462	.	+	.	ID=Os01t0866200-00;Name=Os01t0866200-00;Locus_id=Os01g0866200;Note=Similar to Histone H3.;Transcript_evidence=EU941866 (DDBJ);ORF_evidence=B8A6X4 (UniProt);TENOR=Os01t0866200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	37513878	37514381	.	+	0	Parent=Os01t0866200-00
Chr01	irgsp1_rep	three_prime_UTR	37514382	37514462	.	+	.	Parent=Os01t0866200-00
Chr01	irgsp1_rep	mRNA	37514821	37518597	.	+	.	ID=Os01t0866300-01;Name=Os01t0866300-01;Locus_id=Os01g0866300;Note=VAMP-like protein YKT61 (AtYKT61) (Geranylgeranylated protein 1) (AtGP1).;Transcript_evidence=AK068786 (DDBJ%2C Best hit);ORF_evidence=B6T9E2 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: integral to membrane (GO:0016021);InterPro=Synaptobrevin (IPR001388),Longin (IPR010908),Longin-like (IPR011012);NIAS_FLcDNA=J013158L24;TENOR=Os01t0866300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	37514821	37514927	.	+	.	Parent=Os01t0866300-01
Chr01	irgsp1_rep	CDS	37514928	37515162	.	+	0	Parent=Os01t0866300-01
Chr01	irgsp1_rep	CDS	37515753	37515850	.	+	2	Parent=Os01t0866300-01
Chr01	irgsp1_rep	CDS	37516532	37516645	.	+	0	Parent=Os01t0866300-01
Chr01	irgsp1_rep	CDS	37517102	37517167	.	+	0	Parent=Os01t0866300-01
Chr01	irgsp1_rep	CDS	37517400	37517486	.	+	0	Parent=Os01t0866300-01
Chr01	irgsp1_rep	CDS	37517963	37518013	.	+	0	Parent=Os01t0866300-01
Chr01	irgsp1_rep	three_prime_UTR	37518014	37518050	.	+	.	Parent=Os01t0866300-01
Chr01	irgsp1_rep	three_prime_UTR	37518179	37518597	.	+	.	Parent=Os01t0866300-01
Chr01	irgsp1_rep	mRNA	37514843	37518469	.	+	.	ID=Os01t0866300-02;Name=Os01t0866300-02;Locus_id=Os01g0866300;Note=VAMP-like protein YKT61 (AtYKT61) (Geranylgeranylated protein 1) (AtGP1).;Transcript_evidence=AK059875 (DDBJ%2C Best hit);ORF_evidence=B6T9E2 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: integral to membrane (GO:0016021);InterPro=Synaptobrevin (IPR001388),Longin (IPR010908),Longin-like (IPR011012);NIAS_FLcDNA=006-207-F07;Expression=AK059875;TENOR=Os01t0866300-02;KEGG=Os01t0866300-02
Chr01	irgsp1_rep	five_prime_UTR	37514843	37514927	.	+	.	Parent=Os01t0866300-02
Chr01	irgsp1_rep	CDS	37514928	37515162	.	+	0	Parent=Os01t0866300-02
Chr01	irgsp1_rep	CDS	37515753	37515850	.	+	2	Parent=Os01t0866300-02
Chr01	irgsp1_rep	CDS	37516532	37516645	.	+	0	Parent=Os01t0866300-02
Chr01	irgsp1_rep	CDS	37517102	37517167	.	+	0	Parent=Os01t0866300-02
Chr01	irgsp1_rep	CDS	37517400	37517486	.	+	0	Parent=Os01t0866300-02
Chr01	irgsp1_rep	CDS	37517963	37518013	.	+	0	Parent=Os01t0866300-02
Chr01	irgsp1_rep	three_prime_UTR	37518014	37518050	.	+	.	Parent=Os01t0866300-02
Chr01	irgsp1_rep	three_prime_UTR	37518179	37518469	.	+	.	Parent=Os01t0866300-02
Chr01	irgsp1_rep	mRNA	37519585	37522414	.	+	.	ID=Os01t0866400-01;Name=Os01t0866400-01;Locus_id=Os01g0866400;CGSNL Gene Symbol=MOC2;CGSNL Gene Name=MONOCULM 2;Oryzabase Gene Symbol Synonym(s)=FR%2C OsFR%2C FBP1%2C OsFBP1%2C OsMOC2%2C OscFBP1%2C cFBP1;Oryzabase Gene Name Synonym(s)=cytosolic fructose 1%2C 6-bisphosphatase%2C cytosolic FruP2ase%2C monoculm 2%2C monoculm2%2C cytosolic fructose-1%2C 6-bisphosphatase 1;Note=Similar to Fructose-1%2C6-bisphosphatase (EC 3.1.3.11) (Fragment).;Transcript_evidence=AK070516 (DDBJ%2C Best hit),AK119536 (DDBJ%2C Best hit);ORF_evidence=A2WXB2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: phosphoric ester hydrolase activity (GO:0042578);InterPro=Fructose-1%2C6-bisphosphatase class 1/Sedoheputulose-1%2C7-bisphosphatase (IPR000146),Fructose-1%2C6-bisphosphatase%2C active site (IPR020548);NIAS_FLcDNA=J023057C24,001-204-B07;Oryzabase=15540;TENOR=Os01t0866400-01
Chr01	irgsp1_rep	five_prime_UTR	37519585	37519694	.	+	.	Parent=Os01t0866400-01
Chr01	irgsp1_rep	CDS	37519695	37519853	.	+	0	Parent=Os01t0866400-01
Chr01	irgsp1_rep	CDS	37519958	37520009	.	+	0	Parent=Os01t0866400-01
Chr01	irgsp1_rep	CDS	37520102	37520172	.	+	2	Parent=Os01t0866400-01
Chr01	irgsp1_rep	CDS	37520261	37520322	.	+	0	Parent=Os01t0866400-01
Chr01	irgsp1_rep	CDS	37520431	37520497	.	+	1	Parent=Os01t0866400-01
Chr01	irgsp1_rep	CDS	37520902	37521015	.	+	0	Parent=Os01t0866400-01
Chr01	irgsp1_rep	CDS	37521098	37521184	.	+	0	Parent=Os01t0866400-01
Chr01	irgsp1_rep	CDS	37521312	37521382	.	+	0	Parent=Os01t0866400-01
Chr01	irgsp1_rep	CDS	37521459	37521524	.	+	1	Parent=Os01t0866400-01
Chr01	irgsp1_rep	CDS	37521682	37521768	.	+	1	Parent=Os01t0866400-01
Chr01	irgsp1_rep	CDS	37521868	37521943	.	+	1	Parent=Os01t0866400-01
Chr01	irgsp1_rep	CDS	37522062	37522169	.	+	0	Parent=Os01t0866400-01
Chr01	irgsp1_rep	three_prime_UTR	37522170	37522414	.	+	.	Parent=Os01t0866400-01
Chr01	irgsp1_rep	mRNA	37522263	37524040	.	-	.	ID=Os01t0866500-01;Name=Os01t0866500-01;Locus_id=Os01g0866500;Oryzabase Gene Name Synonym(s)=sPPase%2C Soluble Inorganic Pyrophosphatase;Note=Similar to Soluble inorganic pyrophosphatase (EC 3.6.1.1) (Pyrophosphate phospho- hydrolase) (PPase).;Transcript_evidence=AK111757 (DDBJ%2C Best hit);ORF_evidence=NP_001104889.1 (RefSeq);GO=Biological Process: phosphate-containing compound metabolic process (GO:0006796),Cellular Component: cytoplasm (GO:0005737),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: inorganic diphosphatase activity (GO:0004427);InterPro=Inorganic pyrophosphatase (IPR008162);NIAS_FLcDNA=J023060L20;Oryzabase=22993;Expression=AK111757;TENOR=Os01t0866500-01;KEGG=Os01t0866500-01 (EC:3.6.1.1)
Chr01	irgsp1_rep	five_prime_UTR	37523963	37524040	.	-	.	Parent=Os01t0866500-01
Chr01	irgsp1_rep	CDS	37523836	37523962	.	-	0	Parent=Os01t0866500-01
Chr01	irgsp1_rep	CDS	37523661	37523689	.	-	2	Parent=Os01t0866500-01
Chr01	irgsp1_rep	CDS	37523496	37523561	.	-	0	Parent=Os01t0866500-01
Chr01	irgsp1_rep	CDS	37523299	37523406	.	-	0	Parent=Os01t0866500-01
Chr01	irgsp1_rep	CDS	37523148	37523213	.	-	0	Parent=Os01t0866500-01
Chr01	irgsp1_rep	CDS	37522935	37523055	.	-	0	Parent=Os01t0866500-01
Chr01	irgsp1_rep	CDS	37522767	37522848	.	-	2	Parent=Os01t0866500-01
Chr01	irgsp1_rep	CDS	37522625	37522664	.	-	1	Parent=Os01t0866500-01
Chr01	irgsp1_rep	three_prime_UTR	37522263	37522624	.	-	.	Parent=Os01t0866500-01
Chr01	irgsp1_rep	mRNA	37522757	37523918	.	+	.	ID=Os01t0866550-00;Name=Os01t0866550-00;Locus_id=Os01g0866550;Note=Non-protein coding transcript.;Transcript_evidence=BT019269 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0866550-00
Chr01	irgsp1_rep	exon	37522757	37522846	.	+	.	Parent=Os01t0866550-00
Chr01	irgsp1_rep	exon	37522937	37523101	.	+	.	Parent=Os01t0866550-00
Chr01	irgsp1_rep	exon	37523275	37523408	.	+	.	Parent=Os01t0866550-00
Chr01	irgsp1_rep	exon	37523494	37523601	.	+	.	Parent=Os01t0866550-00
Chr01	irgsp1_rep	exon	37523846	37523918	.	+	.	Parent=Os01t0866550-00
Chr01	irgsp1_rep	mRNA	37525983	37526487	.	-	.	ID=Os01t0866600-01;Name=Os01t0866600-01;Locus_id=Os01g0866600;Note=Similar to bolA-like protein.;Transcript_evidence=AK242498 (DDBJ%2C Best hit);ORF_evidence=NP_001148455.1 (RefSeq);InterPro=BolA protein (IPR002634);NIAS_FLcDNA=J080308B20;TENOR=Os01t0866600-01;KEGG=Os01t0866600-01
Chr01	irgsp1_rep	CDS	37526465	37526487	.	-	0	Parent=Os01t0866600-01
Chr01	irgsp1_rep	CDS	37526134	37526332	.	-	1	Parent=Os01t0866600-01
Chr01	irgsp1_rep	three_prime_UTR	37525983	37526133	.	-	.	Parent=Os01t0866600-01
Chr01	irgsp1_rep	mRNA	37527433	37529093	.	-	.	ID=Os01t0866700-01;Name=Os01t0866700-01;Locus_id=Os01g0866700;Oryzabase Gene Name Synonym(s)=Sm gene%2C Sm family protein;Note=Similar to Sm-like protein.;Transcript_evidence=AK060459 (DDBJ%2C Best hit),AK099337 (DDBJ%2C Best hit);ORF_evidence=D8L9L5 (UniProt);InterPro=Like-Sm ribonucleoprotein (LSM) domain (IPR001163),Like-Sm ribonucleoprotein (LSM) domain%2C eukaryotic/archaea-type (IPR006649),Like-Sm ribonucleoprotein (LSM)-related domain (IPR010920);NIAS_FLcDNA=001-012-B01,J033029N05;Oryzabase=15636;Expression=AK060459;TENOR=Os01t0866700-01;KEGG=Os01t0866700-01
Chr01	irgsp1_rep	five_prime_UTR	37529039	37529093	.	-	.	Parent=Os01t0866700-01
Chr01	irgsp1_rep	CDS	37528901	37529038	.	-	0	Parent=Os01t0866700-01
Chr01	irgsp1_rep	CDS	37528107	37528202	.	-	0	Parent=Os01t0866700-01
Chr01	irgsp1_rep	CDS	37527626	37527706	.	-	0	Parent=Os01t0866700-01
Chr01	irgsp1_rep	three_prime_UTR	37527433	37527625	.	-	.	Parent=Os01t0866700-01
Chr01	irgsp1_rep	mRNA	37529968	37530437	.	-	.	ID=Os01t0866750-00;Name=Os01t0866750-00;Locus_id=Os01g0866750;Note=Hypothetical conserved gene.;Transcript_evidence=CU405858 (DDBJ%2C Best hit);ORF_evidence=NP_001046038.1 (RefSeq);TENOR=Os01t0866750-00;KEGG=Os01t0866750-00
Chr01	irgsp1_rep	five_prime_UTR	37530359	37530437	.	-	.	Parent=Os01t0866750-00
Chr01	irgsp1_rep	CDS	37530038	37530358	.	-	0	Parent=Os01t0866750-00
Chr01	irgsp1_rep	three_prime_UTR	37529968	37530037	.	-	.	Parent=Os01t0866750-00
Chr01	irgsp1_rep	mRNA	37535953	37539344	.	+	.	ID=Os01t0866800-01;Name=Os01t0866800-01;Locus_id=Os01g0866800;Oryzabase Gene Symbol Synonym(s)=OsTLP5%2C OsTLP3%2C OsFbox050%2C OsFbox50%2C Os_F0396;Oryzabase Gene Name Synonym(s)=tubby-like protein 5%2C tubby-like protein 3%2C F-box protein 50;Note=Similar to F24P17.15 protein (Tubby-like protein TULP9).;Transcript_evidence=AK102221 (DDBJ%2C Best hit);ORF_evidence=Q8LJA9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Tubby%2C C-terminal (IPR000007),F-box domain%2C cyclin-like (IPR001810),Tubby%2C C-terminal%2C conserved site (IPR018066);NIAS_FLcDNA=J033087L15;Oryzabase=14707;Expression=AK102221;TENOR=Os01t0866800-01;KEGG=Os01t0866800-01
Chr01	irgsp1_rep	five_prime_UTR	37535953	37536203	.	+	.	Parent=Os01t0866800-01
Chr01	irgsp1_rep	five_prime_UTR	37537051	37537114	.	+	.	Parent=Os01t0866800-01
Chr01	irgsp1_rep	five_prime_UTR	37537197	37537249	.	+	.	Parent=Os01t0866800-01
Chr01	irgsp1_rep	CDS	37537250	37537615	.	+	0	Parent=Os01t0866800-01
Chr01	irgsp1_rep	CDS	37537753	37537840	.	+	0	Parent=Os01t0866800-01
Chr01	irgsp1_rep	CDS	37538093	37538225	.	+	2	Parent=Os01t0866800-01
Chr01	irgsp1_rep	CDS	37538308	37539067	.	+	1	Parent=Os01t0866800-01
Chr01	irgsp1_rep	three_prime_UTR	37539068	37539344	.	+	.	Parent=Os01t0866800-01
Chr01	irgsp1_rep	mRNA	37543820	37551292	.	+	.	ID=Os01t0867100-01;Name=Os01t0867100-01;Locus_id=Os01g0867100;Note=Conserved hypothetical protein.;Transcript_evidence=AK066461 (DDBJ%2C Best hit);ORF_evidence=B9EUU6 (UniProt);NIAS_FLcDNA=J013068J10;TENOR=Os01t0867100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	37543820	37543820	.	+	.	Parent=Os01t0867100-01
Chr01	irgsp1_rep	CDS	37543821	37544128	.	+	0	Parent=Os01t0867100-01
Chr01	irgsp1_rep	CDS	37544307	37544415	.	+	1	Parent=Os01t0867100-01
Chr01	irgsp1_rep	three_prime_UTR	37544416	37544638	.	+	.	Parent=Os01t0867100-01
Chr01	irgsp1_rep	three_prime_UTR	37546262	37546545	.	+	.	Parent=Os01t0867100-01
Chr01	irgsp1_rep	three_prime_UTR	37547282	37547387	.	+	.	Parent=Os01t0867100-01
Chr01	irgsp1_rep	three_prime_UTR	37547564	37548419	.	+	.	Parent=Os01t0867100-01
Chr01	irgsp1_rep	three_prime_UTR	37548656	37548761	.	+	.	Parent=Os01t0867100-01
Chr01	irgsp1_rep	three_prime_UTR	37549632	37549691	.	+	.	Parent=Os01t0867100-01
Chr01	irgsp1_rep	three_prime_UTR	37551023	37551292	.	+	.	Parent=Os01t0867100-01
Chr01	irgsp1_rep	mRNA	37552036	37556471	.	+	.	ID=Os01t0867200-01;Name=Os01t0867200-01;Locus_id=Os01g0867200;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK101243 (DDBJ%2C Best hit);ORF_evidence=B8A6X8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943);NIAS_FLcDNA=J033032A03;Expression=AK101243;TENOR=Os01t0867200-01;KEGG=Os01t0867200-01
Chr01	irgsp1_rep	five_prime_UTR	37552036	37552062	.	+	.	Parent=Os01t0867200-01
Chr01	irgsp1_rep	CDS	37552063	37552161	.	+	0	Parent=Os01t0867200-01
Chr01	irgsp1_rep	CDS	37552259	37552324	.	+	0	Parent=Os01t0867200-01
Chr01	irgsp1_rep	CDS	37552620	37552685	.	+	0	Parent=Os01t0867200-01
Chr01	irgsp1_rep	CDS	37552771	37552846	.	+	0	Parent=Os01t0867200-01
Chr01	irgsp1_rep	CDS	37553796	37553873	.	+	2	Parent=Os01t0867200-01
Chr01	irgsp1_rep	CDS	37553990	37554087	.	+	2	Parent=Os01t0867200-01
Chr01	irgsp1_rep	CDS	37554251	37554324	.	+	0	Parent=Os01t0867200-01
Chr01	irgsp1_rep	CDS	37554651	37554741	.	+	1	Parent=Os01t0867200-01
Chr01	irgsp1_rep	CDS	37554820	37554977	.	+	0	Parent=Os01t0867200-01
Chr01	irgsp1_rep	CDS	37555165	37555207	.	+	1	Parent=Os01t0867200-01
Chr01	irgsp1_rep	CDS	37555362	37555427	.	+	0	Parent=Os01t0867200-01
Chr01	irgsp1_rep	CDS	37555854	37555931	.	+	0	Parent=Os01t0867200-01
Chr01	irgsp1_rep	CDS	37556102	37556194	.	+	0	Parent=Os01t0867200-01
Chr01	irgsp1_rep	three_prime_UTR	37556195	37556471	.	+	.	Parent=Os01t0867200-01
Chr01	irgsp1_rep	mRNA	37556707	37560104	.	-	.	ID=Os01t0867300-01;Name=Os01t0867300-01;Locus_id=Os01g0867300;RAP-DB Gene Symbol Synonym(s)=BZIP12%2C OsbZIP12%2C OsABF1;RAP-DB Gene Name Synonym(s)=b-ZIP TRANSCRIPTION FACTOR 12%2C b-ZIP transcription factor 12%2C ABA responsive element binding factor 1;CGSNL Gene Symbol=BZIP12;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 12;Oryzabase Gene Symbol Synonym(s)=OsbZIP12%2C OsABF1%2C ABF1%2C OsOSE2%2C OSE2;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 12%2C ABA responsive element binding factor 1%2C ORGAN SPECIFIC ELEMENT 2;Note=bZIP transcription factor%2C Abiotic stress response%2C ABA signaling%2C Suppressor of floral transition upon drought stress;Transcript_evidence=GQ904238,AK067919;ORF_evidence=Q0JHF1;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Basic-leucine zipper domain (IPR004827);NIAS_FLcDNA=J013123H12;Manual Curation=May 12%2C 2016;Literature_PMID=26945049,20039193;Oryzabase=10101;Expression=AK067919;TENOR=Os01t0867300-01;KEGG=Os01t0867300-01
Chr01	irgsp1_rep	five_prime_UTR	37559732	37560104	.	-	.	Parent=Os01t0867300-01
Chr01	irgsp1_rep	CDS	37559114	37559731	.	-	0	Parent=Os01t0867300-01
Chr01	irgsp1_rep	CDS	37558947	37559018	.	-	0	Parent=Os01t0867300-01
Chr01	irgsp1_rep	CDS	37558163	37558192	.	-	0	Parent=Os01t0867300-01
Chr01	irgsp1_rep	CDS	37557171	37557251	.	-	0	Parent=Os01t0867300-01
Chr01	irgsp1_rep	three_prime_UTR	37556707	37557170	.	-	.	Parent=Os01t0867300-01
Chr01	irgsp1_rep	mRNA	37557352	37558009	.	-	.	ID=Os01t0867400-01;Name=Os01t0867400-01;Locus_id=Os01g0867400;Note=Non-protein coding transcript.;Transcript_evidence=AK063889 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-122-G04;TENOR=Os01t0867400-01
Chr01	irgsp1_rep	exon	37557352	37558009	.	-	.	Parent=Os01t0867400-01
Chr01	irgsp1_rep	mRNA	37559112	37559736	.	+	.	ID=Os01t0867450-00;Name=Os01t0867450-00;Locus_id=Os01g0867450;Note=Non-protein coding transcript.;Transcript_evidence=EU954971 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0867450-00
Chr01	irgsp1_rep	exon	37559112	37559736	.	+	.	Parent=Os01t0867450-00
Chr01	irgsp1_rep	mRNA	37566054	37575892	.	+	.	ID=Os01t0867600-01;Name=Os01t0867600-01;Locus_id=Os01g0867600;Note=Similar to UDP-glucose:sterol glucosyltransferase (EC 2.4.1.173).;Transcript_evidence=AK102226 (DDBJ%2C Best hit);ORF_evidence=B6SKE1 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: metabolic process (GO:0008152),Biological Process: lipid glycosylation (GO:0030259),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213),Glycosyl transferase%2C family 28 (IPR004276);NIAS_FLcDNA=J033087N12;Expression=AK102226;TENOR=Os01t0867600-01;KEGG=Os01t0867600-01 (EC:2.4.1.173)
Chr01	irgsp1_rep	five_prime_UTR	37566054	37566340	.	+	.	Parent=Os01t0867600-01
Chr01	irgsp1_rep	CDS	37566341	37566536	.	+	0	Parent=Os01t0867600-01
Chr01	irgsp1_rep	CDS	37567338	37567471	.	+	2	Parent=Os01t0867600-01
Chr01	irgsp1_rep	CDS	37567993	37568232	.	+	0	Parent=Os01t0867600-01
Chr01	irgsp1_rep	CDS	37569746	37569860	.	+	0	Parent=Os01t0867600-01
Chr01	irgsp1_rep	CDS	37570234	37570404	.	+	2	Parent=Os01t0867600-01
Chr01	irgsp1_rep	CDS	37571362	37571425	.	+	2	Parent=Os01t0867600-01
Chr01	irgsp1_rep	CDS	37572052	37572109	.	+	1	Parent=Os01t0867600-01
Chr01	irgsp1_rep	CDS	37572252	37572426	.	+	0	Parent=Os01t0867600-01
Chr01	irgsp1_rep	CDS	37573004	37573134	.	+	2	Parent=Os01t0867600-01
Chr01	irgsp1_rep	CDS	37573584	37573686	.	+	0	Parent=Os01t0867600-01
Chr01	irgsp1_rep	CDS	37574063	37574139	.	+	2	Parent=Os01t0867600-01
Chr01	irgsp1_rep	CDS	37574554	37574601	.	+	0	Parent=Os01t0867600-01
Chr01	irgsp1_rep	CDS	37574903	37575052	.	+	0	Parent=Os01t0867600-01
Chr01	irgsp1_rep	CDS	37575551	37575751	.	+	0	Parent=Os01t0867600-01
Chr01	irgsp1_rep	three_prime_UTR	37575752	37575892	.	+	.	Parent=Os01t0867600-01
Chr01	irgsp1_rep	mRNA	37576887	37579107	.	+	.	ID=Os01t0867700-01;Name=Os01t0867700-01;Locus_id=Os01g0867700;Note=Yip1 domain containing protein.;Transcript_evidence=AK108852 (DDBJ%2C Best hit);ORF_evidence=B6TPW7 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Yip1 domain (IPR006977);NIAS_FLcDNA=002-152-A09;Expression=AK108852;TENOR=Os01t0867700-01;KEGG=Os01t0867700-01
Chr01	irgsp1_rep	five_prime_UTR	37576887	37577029	.	+	.	Parent=Os01t0867700-01
Chr01	irgsp1_rep	CDS	37577030	37577512	.	+	0	Parent=Os01t0867700-01
Chr01	irgsp1_rep	CDS	37578559	37578633	.	+	0	Parent=Os01t0867700-01
Chr01	irgsp1_rep	CDS	37578747	37579007	.	+	0	Parent=Os01t0867700-01
Chr01	irgsp1_rep	three_prime_UTR	37579008	37579107	.	+	.	Parent=Os01t0867700-01
Chr01	irgsp1_rep	mRNA	37580580	37584836	.	+	.	ID=Os01t0867800-01;Name=Os01t0867800-01;Locus_id=Os01g0867800;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK069062 (DDBJ%2C Best hit);ORF_evidence=D8L9M8 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023006N01;Expression=AK069062;TENOR=Os01t0867800-01;KEGG=Os01t0867800-01
Chr01	irgsp1_rep	five_prime_UTR	37580580	37580706	.	+	.	Parent=Os01t0867800-01
Chr01	irgsp1_rep	five_prime_UTR	37580838	37580864	.	+	.	Parent=Os01t0867800-01
Chr01	irgsp1_rep	CDS	37580865	37580921	.	+	0	Parent=Os01t0867800-01
Chr01	irgsp1_rep	CDS	37581016	37581087	.	+	0	Parent=Os01t0867800-01
Chr01	irgsp1_rep	CDS	37581190	37581254	.	+	0	Parent=Os01t0867800-01
Chr01	irgsp1_rep	CDS	37581638	37581719	.	+	1	Parent=Os01t0867800-01
Chr01	irgsp1_rep	CDS	37582362	37582491	.	+	0	Parent=Os01t0867800-01
Chr01	irgsp1_rep	CDS	37582746	37582810	.	+	2	Parent=Os01t0867800-01
Chr01	irgsp1_rep	CDS	37582919	37582968	.	+	0	Parent=Os01t0867800-01
Chr01	irgsp1_rep	CDS	37583054	37583095	.	+	1	Parent=Os01t0867800-01
Chr01	irgsp1_rep	CDS	37583193	37583244	.	+	1	Parent=Os01t0867800-01
Chr01	irgsp1_rep	CDS	37583372	37583420	.	+	0	Parent=Os01t0867800-01
Chr01	irgsp1_rep	CDS	37583525	37583538	.	+	2	Parent=Os01t0867800-01
Chr01	irgsp1_rep	CDS	37583683	37583790	.	+	0	Parent=Os01t0867800-01
Chr01	irgsp1_rep	CDS	37583870	37584013	.	+	0	Parent=Os01t0867800-01
Chr01	irgsp1_rep	CDS	37584162	37584551	.	+	0	Parent=Os01t0867800-01
Chr01	irgsp1_rep	three_prime_UTR	37584552	37584836	.	+	.	Parent=Os01t0867800-01
Chr01	irgsp1_rep	mRNA	37580581	37584836	.	+	.	ID=Os01t0867800-02;Name=Os01t0867800-02;Locus_id=Os01g0867800;Note=Similar to RBP50.;Transcript_evidence=AK066622 (DDBJ%2C Best hit);ORF_evidence=C0J4I8 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013070J15;Expression=AK066622;TENOR=Os01t0867800-02;KEGG=Os01t0867800-02
Chr01	irgsp1_rep	five_prime_UTR	37580581	37580706	.	+	.	Parent=Os01t0867800-02
Chr01	irgsp1_rep	five_prime_UTR	37580838	37580864	.	+	.	Parent=Os01t0867800-02
Chr01	irgsp1_rep	CDS	37580865	37580921	.	+	0	Parent=Os01t0867800-02
Chr01	irgsp1_rep	CDS	37581016	37581087	.	+	0	Parent=Os01t0867800-02
Chr01	irgsp1_rep	CDS	37581178	37581254	.	+	0	Parent=Os01t0867800-02
Chr01	irgsp1_rep	CDS	37581638	37581719	.	+	1	Parent=Os01t0867800-02
Chr01	irgsp1_rep	CDS	37582746	37582810	.	+	0	Parent=Os01t0867800-02
Chr01	irgsp1_rep	CDS	37582919	37582952	.	+	1	Parent=Os01t0867800-02
Chr01	irgsp1_rep	three_prime_UTR	37582953	37582968	.	+	.	Parent=Os01t0867800-02
Chr01	irgsp1_rep	three_prime_UTR	37583054	37583095	.	+	.	Parent=Os01t0867800-02
Chr01	irgsp1_rep	three_prime_UTR	37583193	37583244	.	+	.	Parent=Os01t0867800-02
Chr01	irgsp1_rep	three_prime_UTR	37583372	37583420	.	+	.	Parent=Os01t0867800-02
Chr01	irgsp1_rep	three_prime_UTR	37583525	37583538	.	+	.	Parent=Os01t0867800-02
Chr01	irgsp1_rep	three_prime_UTR	37583683	37583790	.	+	.	Parent=Os01t0867800-02
Chr01	irgsp1_rep	three_prime_UTR	37583870	37584013	.	+	.	Parent=Os01t0867800-02
Chr01	irgsp1_rep	three_prime_UTR	37584162	37584836	.	+	.	Parent=Os01t0867800-02
Chr01	irgsp1_rep	mRNA	37582745	37584706	.	+	.	ID=Os01t0867800-03;Name=Os01t0867800-03;Locus_id=Os01g0867800;Note=Similar to RBP50.;Transcript_evidence=AK062260 (DDBJ%2C Best hit);ORF_evidence=D8L9M8 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-047-G12;Expression=AK062260;TENOR=Os01t0867800-03;KEGG=Os01t0867800-03
Chr01	irgsp1_rep	CDS	37582745	37582810	.	+	0	Parent=Os01t0867800-03
Chr01	irgsp1_rep	CDS	37582919	37582968	.	+	0	Parent=Os01t0867800-03
Chr01	irgsp1_rep	CDS	37583054	37583095	.	+	1	Parent=Os01t0867800-03
Chr01	irgsp1_rep	CDS	37583193	37583244	.	+	1	Parent=Os01t0867800-03
Chr01	irgsp1_rep	CDS	37583372	37583420	.	+	0	Parent=Os01t0867800-03
Chr01	irgsp1_rep	CDS	37583525	37583538	.	+	2	Parent=Os01t0867800-03
Chr01	irgsp1_rep	CDS	37583683	37583790	.	+	0	Parent=Os01t0867800-03
Chr01	irgsp1_rep	CDS	37583870	37584013	.	+	0	Parent=Os01t0867800-03
Chr01	irgsp1_rep	CDS	37584162	37584551	.	+	0	Parent=Os01t0867800-03
Chr01	irgsp1_rep	three_prime_UTR	37584552	37584706	.	+	.	Parent=Os01t0867800-03
Chr01	irgsp1_rep	mRNA	37584891	37588115	.	-	.	ID=Os01t0867900-01;Name=Os01t0867900-01;Locus_id=Os01g0867900;Note=Protein of unknown function DUF502 family protein.;Transcript_evidence=AK061366 (DDBJ%2C Best hit);ORF_evidence=B4FES4 (UniProt);InterPro=Protein of unknown function DUF502 (IPR007462);NIAS_FLcDNA=006-304-D06;Expression=AK061366;TENOR=Os01t0867900-01;KEGG=Os01t0867900-01
Chr01	irgsp1_rep	five_prime_UTR	37587992	37588115	.	-	.	Parent=Os01t0867900-01
Chr01	irgsp1_rep	CDS	37587872	37587991	.	-	0	Parent=Os01t0867900-01
Chr01	irgsp1_rep	CDS	37586813	37586865	.	-	0	Parent=Os01t0867900-01
Chr01	irgsp1_rep	CDS	37586613	37586722	.	-	1	Parent=Os01t0867900-01
Chr01	irgsp1_rep	CDS	37586114	37586281	.	-	2	Parent=Os01t0867900-01
Chr01	irgsp1_rep	CDS	37585918	37586015	.	-	2	Parent=Os01t0867900-01
Chr01	irgsp1_rep	CDS	37585634	37585760	.	-	0	Parent=Os01t0867900-01
Chr01	irgsp1_rep	CDS	37585338	37585441	.	-	2	Parent=Os01t0867900-01
Chr01	irgsp1_rep	three_prime_UTR	37585308	37585337	.	-	.	Parent=Os01t0867900-01
Chr01	irgsp1_rep	three_prime_UTR	37584891	37585227	.	-	.	Parent=Os01t0867900-01
Chr01	irgsp1_rep	mRNA	37584884	37588102	.	-	.	ID=Os01t0867900-02;Name=Os01t0867900-02;Locus_id=Os01g0867900;Note=Similar to COV1-like protein.;Transcript_evidence=AK121441 (DDBJ%2C Best hit);ORF_evidence=B4FES4 (UniProt);InterPro=Protein of unknown function DUF502 (IPR007462);NIAS_FLcDNA=J023140N15;TENOR=Os01t0867900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	37586986	37588102	.	-	.	Parent=Os01t0867900-02
Chr01	irgsp1_rep	CDS	37586613	37586985	.	-	0	Parent=Os01t0867900-02
Chr01	irgsp1_rep	CDS	37586114	37586281	.	-	2	Parent=Os01t0867900-02
Chr01	irgsp1_rep	CDS	37585918	37586015	.	-	2	Parent=Os01t0867900-02
Chr01	irgsp1_rep	CDS	37585634	37585760	.	-	0	Parent=Os01t0867900-02
Chr01	irgsp1_rep	CDS	37585338	37585441	.	-	2	Parent=Os01t0867900-02
Chr01	irgsp1_rep	three_prime_UTR	37585308	37585337	.	-	.	Parent=Os01t0867900-02
Chr01	irgsp1_rep	three_prime_UTR	37584884	37585227	.	-	.	Parent=Os01t0867900-02
Chr01	irgsp1_rep	mRNA	37590034	37592446	.	-	.	ID=Os01t0868000-01;Name=Os01t0868000-01;Locus_id=Os01g0868000;RAP-DB Gene Symbol Synonym(s)=ERF99%2C OsEREBP2%2C EREBP2%2C OsERF#099%2C OsERF099%2C OsERF99%2C AP2/EREBP#080%2C AP2/EREBP80;RAP-DB Gene Name Synonym(s)=ETHYLENE RESPONSE FACTOR 99%2C ethylene response factor 99%2C APETALA2/ethylene-responsive element binding protein 80%2C ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN2;CGSNL Gene Symbol=ERF99;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 99;Oryzabase Gene Symbol Synonym(s)=OsERF#099%2C OsERF099%2C OsERF99%2C AP2/EREBP#080%2C AP2/EREBP80%2C OsEREBP2%2C EREBP2;Oryzabase Gene Name Synonym(s)=ethylene response factor 99%2C APETALA2/ethylene-responsive element binding protein 80%2C ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN2;Note=AP2/ERF transcription factor%2C Abiotic stress response%2C Salt stress response;Transcript_evidence=NM_001051453.1;ORF_evidence=Q5N965;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700);InterPro=DNA-binding domain (IPR016177),AP2/ERF domain (IPR001471);Manual Curation=September 30%2C 2015;Literature_PMID=23703395;Oryzabase=10600;TENOR=Os01t0868000-00
Chr01	irgsp1_rep	CDS	37592173	37592446	.	-	0	Parent=Os01t0868000-01
Chr01	irgsp1_rep	CDS	37590034	37590815	.	-	2	Parent=Os01t0868000-01
Chr01	irgsp1_rep	mRNA	37616705	37622057	.	-	.	ID=Os01t0868200-01;Name=Os01t0868200-01;Locus_id=Os01g0868200;Note=Zinc finger%2C DHHC-type domain containing protein.;Transcript_evidence=AK067216 (DDBJ%2C Best hit);ORF_evidence=B6TJT8 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C DHHC-type%2C palmitoyltransferase (IPR001594);NIAS_FLcDNA=J013098P16;Expression=AK067216;TENOR=Os01t0868200-01;KEGG=Os01t0868200-01
Chr01	irgsp1_rep	five_prime_UTR	37621862	37622057	.	-	.	Parent=Os01t0868200-01
Chr01	irgsp1_rep	CDS	37621799	37621861	.	-	0	Parent=Os01t0868200-01
Chr01	irgsp1_rep	CDS	37620572	37620757	.	-	0	Parent=Os01t0868200-01
Chr01	irgsp1_rep	CDS	37620186	37620479	.	-	0	Parent=Os01t0868200-01
Chr01	irgsp1_rep	CDS	37619324	37619557	.	-	0	Parent=Os01t0868200-01
Chr01	irgsp1_rep	CDS	37617166	37617663	.	-	0	Parent=Os01t0868200-01
Chr01	irgsp1_rep	three_prime_UTR	37616705	37617165	.	-	.	Parent=Os01t0868200-01
Chr01	irgsp1_rep	mRNA	37615956	37622052	.	-	.	ID=Os01t0868200-02;Name=Os01t0868200-02;Locus_id=Os01g0868200;Note=Zinc finger%2C DHHC-type domain containing protein.;Transcript_evidence=AK119393 (DDBJ%2C Best hit);ORF_evidence=B6TJT8 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C DHHC-type%2C palmitoyltransferase (IPR001594);NIAS_FLcDNA=001-132-D02;Expression=AK119393;TENOR=Os01t0868200-02;KEGG=Os01t0868200-02
Chr01	irgsp1_rep	five_prime_UTR	37621862	37622052	.	-	.	Parent=Os01t0868200-02
Chr01	irgsp1_rep	CDS	37621799	37621861	.	-	0	Parent=Os01t0868200-02
Chr01	irgsp1_rep	CDS	37620572	37620757	.	-	0	Parent=Os01t0868200-02
Chr01	irgsp1_rep	CDS	37620186	37620479	.	-	0	Parent=Os01t0868200-02
Chr01	irgsp1_rep	CDS	37619324	37619557	.	-	0	Parent=Os01t0868200-02
Chr01	irgsp1_rep	CDS	37617166	37617663	.	-	0	Parent=Os01t0868200-02
Chr01	irgsp1_rep	three_prime_UTR	37617019	37617165	.	-	.	Parent=Os01t0868200-02
Chr01	irgsp1_rep	three_prime_UTR	37615956	37616592	.	-	.	Parent=Os01t0868200-02
Chr01	irgsp1_rep	mRNA	37625916	37636099	.	-	.	ID=Os01t0868300-01;Name=Os01t0868300-01;Locus_id=Os01g0868300;Oryzabase Gene Symbol Synonym(s)=OSPOLA%2C Ospolalpha;Oryzabase Gene Name Synonym(s)=DNA polymerase alpha catalytic subunit%2C catalytic subunit of DNA polymerase alpha;Note=Similar to DNA polymerase alpha catalytic subunit (EC 2.7.7.7).;Transcript_evidence=AK288311 (DDBJ%2C Best hit);ORF_evidence=B8A6Y4 (UniProt);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Biological Process: DNA replication (GO:0006260),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleoside binding (GO:0001882),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed DNA polymerase activity (GO:0003887);InterPro=DNA-directed DNA polymerase%2C family B%2C pol2 (IPR004578),DNA-directed DNA polymerase%2C family B%2C exonuclease domain (IPR006133),DNA-directed DNA polymerase%2C family B%2C multifunctional domain (IPR006134),DNA-directed DNA polymerase%2C family B (IPR006172),Ribonuclease H-like (IPR012337),Zinc finger%2C DNA-directed DNA polymerase%2C family B%2C alpha (IPR015088),DNA-directed DNA polymerase%2C family B%2C conserved site (IPR017964),DNA polymerase%2C palm domain (IPR023211),DNA polymerase alpha catalytic subunit%2C N-terminal domain (IPR024647);NIAS_FLcDNA=J090020K08;Oryzabase=14476;TENOR=Os01t0868300-01;KEGG=Os01t0868300-01 (EC:2.7.7.7)
Chr01	irgsp1_rep	five_prime_UTR	37636035	37636099	.	-	.	Parent=Os01t0868300-01
Chr01	irgsp1_rep	CDS	37634901	37636034	.	-	0	Parent=Os01t0868300-01
Chr01	irgsp1_rep	CDS	37634316	37634483	.	-	0	Parent=Os01t0868300-01
Chr01	irgsp1_rep	CDS	37634151	37634234	.	-	0	Parent=Os01t0868300-01
Chr01	irgsp1_rep	CDS	37633964	37634038	.	-	0	Parent=Os01t0868300-01
Chr01	irgsp1_rep	CDS	37633830	37633894	.	-	0	Parent=Os01t0868300-01
Chr01	irgsp1_rep	CDS	37633629	37633719	.	-	1	Parent=Os01t0868300-01
Chr01	irgsp1_rep	CDS	37633325	37633510	.	-	0	Parent=Os01t0868300-01
Chr01	irgsp1_rep	CDS	37632936	37633099	.	-	0	Parent=Os01t0868300-01
Chr01	irgsp1_rep	CDS	37632737	37632851	.	-	1	Parent=Os01t0868300-01
Chr01	irgsp1_rep	CDS	37632472	37632651	.	-	0	Parent=Os01t0868300-01
Chr01	irgsp1_rep	CDS	37632286	37632399	.	-	0	Parent=Os01t0868300-01
Chr01	irgsp1_rep	CDS	37632066	37632185	.	-	0	Parent=Os01t0868300-01
Chr01	irgsp1_rep	CDS	37631681	37631992	.	-	0	Parent=Os01t0868300-01
Chr01	irgsp1_rep	CDS	37631464	37631556	.	-	0	Parent=Os01t0868300-01
Chr01	irgsp1_rep	CDS	37630308	37630426	.	-	0	Parent=Os01t0868300-01
Chr01	irgsp1_rep	CDS	37630140	37630212	.	-	1	Parent=Os01t0868300-01
Chr01	irgsp1_rep	CDS	37629970	37630026	.	-	0	Parent=Os01t0868300-01
Chr01	irgsp1_rep	CDS	37629197	37629289	.	-	0	Parent=Os01t0868300-01
Chr01	irgsp1_rep	CDS	37628716	37628835	.	-	0	Parent=Os01t0868300-01
Chr01	irgsp1_rep	CDS	37628543	37628640	.	-	0	Parent=Os01t0868300-01
Chr01	irgsp1_rep	CDS	37628418	37628463	.	-	1	Parent=Os01t0868300-01
Chr01	irgsp1_rep	CDS	37628117	37628231	.	-	0	Parent=Os01t0868300-01
Chr01	irgsp1_rep	CDS	37627933	37628012	.	-	2	Parent=Os01t0868300-01
Chr01	irgsp1_rep	CDS	37627588	37627701	.	-	0	Parent=Os01t0868300-01
Chr01	irgsp1_rep	CDS	37627416	37627505	.	-	0	Parent=Os01t0868300-01
Chr01	irgsp1_rep	CDS	37627247	37627326	.	-	0	Parent=Os01t0868300-01
Chr01	irgsp1_rep	CDS	37626945	37627167	.	-	1	Parent=Os01t0868300-01
Chr01	irgsp1_rep	CDS	37626815	37626868	.	-	0	Parent=Os01t0868300-01
Chr01	irgsp1_rep	CDS	37626541	37626660	.	-	0	Parent=Os01t0868300-01
Chr01	irgsp1_rep	CDS	37626390	37626464	.	-	0	Parent=Os01t0868300-01
Chr01	irgsp1_rep	CDS	37626156	37626302	.	-	0	Parent=Os01t0868300-01
Chr01	irgsp1_rep	three_prime_UTR	37625916	37626155	.	-	.	Parent=Os01t0868300-01
Chr01	irgsp1_rep	mRNA	37617374	37621965	.	+	.	ID=Os01t0868301-00;Name=Os01t0868301-00;Locus_id=Os01g0868301;Note=Hypothetical protein.;Transcript_evidence=tplb0058b01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0868301-00
Chr01	irgsp1_rep	five_prime_UTR	37617374	37617658	.	+	.	Parent=Os01t0868301-00
Chr01	irgsp1_rep	five_prime_UTR	37619318	37619504	.	+	.	Parent=Os01t0868301-00
Chr01	irgsp1_rep	CDS	37619505	37619548	.	+	0	Parent=Os01t0868301-00
Chr01	irgsp1_rep	CDS	37620182	37620359	.	+	1	Parent=Os01t0868301-00
Chr01	irgsp1_rep	three_prime_UTR	37620360	37620466	.	+	.	Parent=Os01t0868301-00
Chr01	irgsp1_rep	three_prime_UTR	37620558	37620757	.	+	.	Parent=Os01t0868301-00
Chr01	irgsp1_rep	three_prime_UTR	37621799	37621965	.	+	.	Parent=Os01t0868301-00
Chr01	irgsp1_rep	mRNA	37625827	37634176	.	+	.	ID=Os01t0868400-01;Name=Os01t0868400-01;Locus_id=Os01g0868400;Note=Hypothetical protein.;Transcript_evidence=AK103345 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033126D04;TENOR=Os01t0868400-01;KEGG=Os01t0868400-01
Chr01	irgsp1_rep	five_prime_UTR	37625827	37626302	.	+	.	Parent=Os01t0868400-01
Chr01	irgsp1_rep	five_prime_UTR	37626390	37626464	.	+	.	Parent=Os01t0868400-01
Chr01	irgsp1_rep	five_prime_UTR	37626541	37626660	.	+	.	Parent=Os01t0868400-01
Chr01	irgsp1_rep	five_prime_UTR	37626815	37626842	.	+	.	Parent=Os01t0868400-01
Chr01	irgsp1_rep	CDS	37626843	37626868	.	+	0	Parent=Os01t0868400-01
Chr01	irgsp1_rep	CDS	37626945	37627167	.	+	1	Parent=Os01t0868400-01
Chr01	irgsp1_rep	CDS	37627247	37627297	.	+	0	Parent=Os01t0868400-01
Chr01	irgsp1_rep	three_prime_UTR	37627298	37627326	.	+	.	Parent=Os01t0868400-01
Chr01	irgsp1_rep	three_prime_UTR	37627416	37627505	.	+	.	Parent=Os01t0868400-01
Chr01	irgsp1_rep	three_prime_UTR	37627588	37627701	.	+	.	Parent=Os01t0868400-01
Chr01	irgsp1_rep	three_prime_UTR	37627933	37628012	.	+	.	Parent=Os01t0868400-01
Chr01	irgsp1_rep	three_prime_UTR	37628117	37628231	.	+	.	Parent=Os01t0868400-01
Chr01	irgsp1_rep	three_prime_UTR	37628418	37628463	.	+	.	Parent=Os01t0868400-01
Chr01	irgsp1_rep	three_prime_UTR	37628543	37628640	.	+	.	Parent=Os01t0868400-01
Chr01	irgsp1_rep	three_prime_UTR	37628716	37628835	.	+	.	Parent=Os01t0868400-01
Chr01	irgsp1_rep	three_prime_UTR	37629197	37629289	.	+	.	Parent=Os01t0868400-01
Chr01	irgsp1_rep	three_prime_UTR	37629970	37630026	.	+	.	Parent=Os01t0868400-01
Chr01	irgsp1_rep	three_prime_UTR	37630140	37630212	.	+	.	Parent=Os01t0868400-01
Chr01	irgsp1_rep	three_prime_UTR	37630308	37630426	.	+	.	Parent=Os01t0868400-01
Chr01	irgsp1_rep	three_prime_UTR	37631464	37631556	.	+	.	Parent=Os01t0868400-01
Chr01	irgsp1_rep	three_prime_UTR	37631681	37631992	.	+	.	Parent=Os01t0868400-01
Chr01	irgsp1_rep	three_prime_UTR	37632066	37632185	.	+	.	Parent=Os01t0868400-01
Chr01	irgsp1_rep	three_prime_UTR	37632286	37632399	.	+	.	Parent=Os01t0868400-01
Chr01	irgsp1_rep	three_prime_UTR	37632472	37632651	.	+	.	Parent=Os01t0868400-01
Chr01	irgsp1_rep	three_prime_UTR	37632737	37632851	.	+	.	Parent=Os01t0868400-01
Chr01	irgsp1_rep	three_prime_UTR	37632936	37633099	.	+	.	Parent=Os01t0868400-01
Chr01	irgsp1_rep	three_prime_UTR	37633325	37633510	.	+	.	Parent=Os01t0868400-01
Chr01	irgsp1_rep	three_prime_UTR	37633629	37633719	.	+	.	Parent=Os01t0868400-01
Chr01	irgsp1_rep	three_prime_UTR	37633830	37633894	.	+	.	Parent=Os01t0868400-01
Chr01	irgsp1_rep	three_prime_UTR	37633964	37634038	.	+	.	Parent=Os01t0868400-01
Chr01	irgsp1_rep	three_prime_UTR	37634151	37634176	.	+	.	Parent=Os01t0868400-01
Chr01	irgsp1_rep	mRNA	37637420	37642840	.	-	.	ID=Os01t0868550-00;Name=Os01t0868550-00;Locus_id=Os01g0868550;Note=Hypothetical protein.;Transcript_evidence=AK360759 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0868550-00
Chr01	irgsp1_rep	CDS	37641991	37642840	.	-	0	Parent=Os01t0868550-00
Chr01	irgsp1_rep	CDS	37637420	37637642	.	-	2	Parent=Os01t0868550-00
Chr01	irgsp1_rep	mRNA	37641515	37643418	.	+	.	ID=Os01t0868600-01;Name=Os01t0868600-01;Locus_id=Os01g0868600;Note=Hypothetical conserved gene.;Transcript_evidence=AK289227 (DDBJ%2C Best hit);ORF_evidence=Q8S1N5 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J100068N23;TENOR=Os01t0868600-01;KEGG=Os01t0868600-01
Chr01	irgsp1_rep	five_prime_UTR	37641515	37641571	.	+	.	Parent=Os01t0868600-01
Chr01	irgsp1_rep	CDS	37641572	37643038	.	+	0	Parent=Os01t0868600-01
Chr01	irgsp1_rep	three_prime_UTR	37643039	37643418	.	+	.	Parent=Os01t0868600-01
Chr01	irgsp1_rep	mRNA	37647790	37649292	.	+	.	ID=Os01t0868800-00;Name=Os01t0868800-00;Locus_id=Os01g0868800;Oryzabase Gene Symbol Synonym(s)=OsSub10%2C SUB10;Oryzabase Gene Name Synonym(s)=Subtilisin 10%2C SUBTILISIN 10;Note=Similar to Subtilase.;Transcript_evidence=ab initio prediction;ORF_evidence=Q84TR6 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);Oryzabase=20099;TENOR=Os01t0868800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	37647790	37649292	.	+	0	Parent=Os01t0868800-00
Chr01	irgsp1_rep	mRNA	37651834	37654381	.	+	.	ID=Os01t0868900-01;Name=Os01t0868900-01;Locus_id=Os01g0868900;Oryzabase Gene Symbol Synonym(s)=OsSub11%2C SUB11;Oryzabase Gene Name Synonym(s)=Subtilisin 11%2C SUBTILISIN 11;Note=Peptidase S8%2C subtilisin-related domain containing protein.;Transcript_evidence=AK099469 (DDBJ%2C Best hit),AK099470 (DDBJ%2C Best hit);ORF_evidence=C7E4J6 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);NIAS_FLcDNA=J013023O13,J013023O14;Oryzabase=20100;Expression=AK099469;TENOR=Os01t0868900-01;KEGG=Os01t0868900-01
Chr01	irgsp1_rep	five_prime_UTR	37651834	37651883	.	+	.	Parent=Os01t0868900-01
Chr01	irgsp1_rep	CDS	37651884	37654166	.	+	0	Parent=Os01t0868900-01
Chr01	irgsp1_rep	three_prime_UTR	37654167	37654381	.	+	.	Parent=Os01t0868900-01
Chr01	irgsp1_rep	mRNA	37652582	37654285	.	+	.	ID=Os01t0868900-02;Name=Os01t0868900-02;Locus_id=Os01g0868900;Oryzabase Gene Symbol Synonym(s)=OsSub11%2C SUB11;Oryzabase Gene Name Synonym(s)=Subtilisin 11%2C SUBTILISIN 11;Note=Similar to predicted protein.;Transcript_evidence=AK062271 (DDBJ%2C Best hit);ORF_evidence=C7E4J6 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);NIAS_FLcDNA=001-100-A07;Oryzabase=20100;Expression=AK062271;TENOR=Os01t0868900-02;KEGG=Os01t0868900-02
Chr01	irgsp1_rep	five_prime_UTR	37652582	37652582	.	+	.	Parent=Os01t0868900-02
Chr01	irgsp1_rep	CDS	37652583	37654166	.	+	0	Parent=Os01t0868900-02
Chr01	irgsp1_rep	three_prime_UTR	37654167	37654285	.	+	.	Parent=Os01t0868900-02
Chr01	irgsp1_rep	mRNA	37655471	37661234	.	-	.	ID=Os01t0869000-01;Name=Os01t0869000-01;Locus_id=Os01g0869000;Note=Protein of unknown function DUF639 family protein.;Transcript_evidence=AK121602 (DDBJ%2C Best hit);ORF_evidence=XP_002458831.1 (RefSeq);InterPro=Protein of unknown function DUF639 (IPR006927);NIAS_FLcDNA=J033041A14;Expression=AK121602;TENOR=Os01t0869000-01;KEGG=Os01t0869000-01
Chr01	irgsp1_rep	five_prime_UTR	37661049	37661234	.	-	.	Parent=Os01t0869000-01
Chr01	irgsp1_rep	CDS	37660898	37661048	.	-	0	Parent=Os01t0869000-01
Chr01	irgsp1_rep	CDS	37660557	37660797	.	-	2	Parent=Os01t0869000-01
Chr01	irgsp1_rep	CDS	37659847	37659994	.	-	1	Parent=Os01t0869000-01
Chr01	irgsp1_rep	CDS	37659560	37659664	.	-	0	Parent=Os01t0869000-01
Chr01	irgsp1_rep	CDS	37659272	37659429	.	-	0	Parent=Os01t0869000-01
Chr01	irgsp1_rep	CDS	37658734	37658896	.	-	1	Parent=Os01t0869000-01
Chr01	irgsp1_rep	CDS	37658170	37658306	.	-	0	Parent=Os01t0869000-01
Chr01	irgsp1_rep	CDS	37657053	37657740	.	-	1	Parent=Os01t0869000-01
Chr01	irgsp1_rep	CDS	37656695	37656807	.	-	0	Parent=Os01t0869000-01
Chr01	irgsp1_rep	CDS	37655941	37656196	.	-	1	Parent=Os01t0869000-01
Chr01	irgsp1_rep	CDS	37655522	37655854	.	-	0	Parent=Os01t0869000-01
Chr01	irgsp1_rep	three_prime_UTR	37655471	37655521	.	-	.	Parent=Os01t0869000-01
Chr01	irgsp1_rep	mRNA	37658125	37661226	.	-	.	ID=Os01t0869000-02;Name=Os01t0869000-02;Locus_id=Os01g0869000;Note=Hypothetical conserved gene.;Transcript_evidence=AK067351 (DDBJ%2C Best hit);ORF_evidence=B8A6Y7 (UniProt);InterPro=Protein of unknown function DUF639 (IPR006927);NIAS_FLcDNA=J013101G04;Expression=AK067351;TENOR=Os01t0869000-02;KEGG=Os01t0869000-02
Chr01	irgsp1_rep	five_prime_UTR	37661049	37661226	.	-	.	Parent=Os01t0869000-02
Chr01	irgsp1_rep	CDS	37660898	37661048	.	-	0	Parent=Os01t0869000-02
Chr01	irgsp1_rep	CDS	37660557	37660797	.	-	2	Parent=Os01t0869000-02
Chr01	irgsp1_rep	CDS	37659847	37659994	.	-	1	Parent=Os01t0869000-02
Chr01	irgsp1_rep	CDS	37659560	37659664	.	-	0	Parent=Os01t0869000-02
Chr01	irgsp1_rep	CDS	37659272	37659429	.	-	0	Parent=Os01t0869000-02
Chr01	irgsp1_rep	CDS	37658734	37658896	.	-	1	Parent=Os01t0869000-02
Chr01	irgsp1_rep	CDS	37658351	37658356	.	-	0	Parent=Os01t0869000-02
Chr01	irgsp1_rep	three_prime_UTR	37658125	37658350	.	-	.	Parent=Os01t0869000-02
Chr01	irgsp1_rep	mRNA	37655441	37659902	.	-	.	ID=Os01t0869000-03;Name=Os01t0869000-03;Locus_id=Os01g0869000;Note=Protein of unknown function DUF639 domain containing protein.;Transcript_evidence=AK068777 (DDBJ%2C Best hit);ORF_evidence=XP_002458831.1 (RefSeq);InterPro=Protein of unknown function DUF639 (IPR006927);NIAS_FLcDNA=J013159O06;TENOR=Os01t0869000-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	37659901	37659902	.	-	.	Parent=Os01t0869000-03
Chr01	irgsp1_rep	CDS	37659847	37659900	.	-	0	Parent=Os01t0869000-03
Chr01	irgsp1_rep	CDS	37659560	37659664	.	-	0	Parent=Os01t0869000-03
Chr01	irgsp1_rep	CDS	37659368	37659424	.	-	0	Parent=Os01t0869000-03
Chr01	irgsp1_rep	three_prime_UTR	37659272	37659367	.	-	.	Parent=Os01t0869000-03
Chr01	irgsp1_rep	three_prime_UTR	37658734	37658896	.	-	.	Parent=Os01t0869000-03
Chr01	irgsp1_rep	three_prime_UTR	37658170	37658356	.	-	.	Parent=Os01t0869000-03
Chr01	irgsp1_rep	three_prime_UTR	37657053	37657740	.	-	.	Parent=Os01t0869000-03
Chr01	irgsp1_rep	three_prime_UTR	37656695	37656807	.	-	.	Parent=Os01t0869000-03
Chr01	irgsp1_rep	three_prime_UTR	37655941	37656196	.	-	.	Parent=Os01t0869000-03
Chr01	irgsp1_rep	three_prime_UTR	37655441	37655854	.	-	.	Parent=Os01t0869000-03
Chr01	irgsp1_rep	mRNA	37664233	37667335	.	+	.	ID=Os01t0869200-01;Name=Os01t0869200-01;Locus_id=Os01g0869200;RAP-DB Gene Symbol Synonym(s)=OsMGT1%2C OsMRS2-2;RAP-DB Gene Name Synonym(s)=MAGNESIUM TRANSPORTER1%2C Magnesium transporter 1%2C MRS2/MGT family member 2;Oryzabase Gene Symbol Synonym(s)=OsMGT1%2C OsMRS2-2%2C MGT1%2C MRS2-2;Oryzabase Gene Name Synonym(s)=MAGNESIUM TRANSPORTER1%2C Magnesium transporter 1%2C MRS2/MGT family member 2;Note=Magnesium transporter%2C Mg-mediated aluminum tolerance;Transcript_evidence=AB731703;ORF_evidence=Q8S1N1,I7HHE1;GO=Biological Process: magnesium ion transport (GO:0015693),Molecular Function: magnesium ion transmembrane transporter activity (GO:0015095);InterPro=Magnesium transporter MRS2/LPE10 (IPR026573);Manual Curation=August 27%2C 2014;Literature_PMID=22732245;Oryzabase=11151;TENOR=Os01t0869200-01
Chr01	irgsp1_rep	five_prime_UTR	37664233	37664265	.	+	.	Parent=Os01t0869200-01
Chr01	irgsp1_rep	CDS	37664266	37664619	.	+	0	Parent=Os01t0869200-01
Chr01	irgsp1_rep	CDS	37664816	37664995	.	+	0	Parent=Os01t0869200-01
Chr01	irgsp1_rep	CDS	37665444	37665572	.	+	0	Parent=Os01t0869200-01
Chr01	irgsp1_rep	CDS	37665677	37665825	.	+	0	Parent=Os01t0869200-01
Chr01	irgsp1_rep	CDS	37665986	37666124	.	+	1	Parent=Os01t0869200-01
Chr01	irgsp1_rep	CDS	37666710	37667015	.	+	0	Parent=Os01t0869200-01
Chr01	irgsp1_rep	three_prime_UTR	37667016	37667335	.	+	.	Parent=Os01t0869200-01
Chr01	irgsp1_rep	mRNA	37667337	37671823	.	-	.	ID=Os01t0869300-01;Name=Os01t0869300-01;Locus_id=Os01g0869300;Note=Conserved hypothetical protein.;Transcript_evidence=AK059347 (DDBJ%2C Best hit);ORF_evidence=B9EUV6 (UniProt);NIAS_FLcDNA=001-026-C03;TENOR=Os01t0869300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	37671823	37671823	.	-	.	Parent=Os01t0869300-01
Chr01	irgsp1_rep	CDS	37671766	37671822	.	-	0	Parent=Os01t0869300-01
Chr01	irgsp1_rep	CDS	37671544	37671681	.	-	0	Parent=Os01t0869300-01
Chr01	irgsp1_rep	CDS	37671378	37671410	.	-	0	Parent=Os01t0869300-01
Chr01	irgsp1_rep	CDS	37670915	37671277	.	-	0	Parent=Os01t0869300-01
Chr01	irgsp1_rep	CDS	37670727	37670791	.	-	0	Parent=Os01t0869300-01
Chr01	irgsp1_rep	CDS	37670595	37670646	.	-	1	Parent=Os01t0869300-01
Chr01	irgsp1_rep	CDS	37669760	37669846	.	-	0	Parent=Os01t0869300-01
Chr01	irgsp1_rep	CDS	37669625	37669653	.	-	0	Parent=Os01t0869300-01
Chr01	irgsp1_rep	CDS	37668349	37668435	.	-	1	Parent=Os01t0869300-01
Chr01	irgsp1_rep	CDS	37668201	37668268	.	-	1	Parent=Os01t0869300-01
Chr01	irgsp1_rep	CDS	37667802	37667896	.	-	2	Parent=Os01t0869300-01
Chr01	irgsp1_rep	CDS	37667636	37667671	.	-	0	Parent=Os01t0869300-01
Chr01	irgsp1_rep	three_prime_UTR	37667337	37667635	.	-	.	Parent=Os01t0869300-01
Chr01	irgsp1_rep	mRNA	37682288	37684012	.	-	.	ID=Os01t0869400-01;Name=Os01t0869400-01;Locus_id=Os01g0869400;Note=Similar to Anthocyanidin 5%2C3-O-glucosyltransferase.;Transcript_evidence=AK063342 (DDBJ%2C Best hit);ORF_evidence=B4FG90 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=001-114-B02;TENOR=Os01t0869400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	37684011	37684012	.	-	.	Parent=Os01t0869400-01
Chr01	irgsp1_rep	CDS	37683915	37684010	.	-	0	Parent=Os01t0869400-01
Chr01	irgsp1_rep	CDS	37682534	37683607	.	-	0	Parent=Os01t0869400-01
Chr01	irgsp1_rep	three_prime_UTR	37682288	37682533	.	-	.	Parent=Os01t0869400-01
Chr01	irgsp1_rep	mRNA	37682625	37684068	.	+	.	ID=Os01t0869450-00;Name=Os01t0869450-00;Locus_id=Os01g0869450;Note=Hypothetical protein.;Transcript_evidence=EU964458 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0869450-00
Chr01	irgsp1_rep	five_prime_UTR	37682625	37682818	.	+	.	Parent=Os01t0869450-00
Chr01	irgsp1_rep	CDS	37682819	37684068	.	+	0	Parent=Os01t0869450-00
Chr01	irgsp1_rep	mRNA	37686752	37689440	.	-	.	ID=Os01t0869500-01;Name=Os01t0869500-01;Locus_id=Os01g0869500;Note=Plant nuclear matrix 1 family protein.;Transcript_evidence=AK070435 (DDBJ%2C Best hit);ORF_evidence=Q94G01 (UniProt);InterPro=Plant nuclear matrix 1 (IPR010604);NIAS_FLcDNA=J023054D19;Expression=AK070435;TENOR=Os01t0869500-01;KEGG=Os01t0869500-01
Chr01	irgsp1_rep	five_prime_UTR	37689345	37689440	.	-	.	Parent=Os01t0869500-01
Chr01	irgsp1_rep	CDS	37689211	37689344	.	-	0	Parent=Os01t0869500-01
Chr01	irgsp1_rep	CDS	37688976	37689061	.	-	1	Parent=Os01t0869500-01
Chr01	irgsp1_rep	CDS	37688823	37688884	.	-	2	Parent=Os01t0869500-01
Chr01	irgsp1_rep	CDS	37688581	37688672	.	-	0	Parent=Os01t0869500-01
Chr01	irgsp1_rep	CDS	37688162	37688287	.	-	1	Parent=Os01t0869500-01
Chr01	irgsp1_rep	CDS	37687946	37688036	.	-	1	Parent=Os01t0869500-01
Chr01	irgsp1_rep	CDS	37687752	37687859	.	-	0	Parent=Os01t0869500-01
Chr01	irgsp1_rep	CDS	37687489	37687587	.	-	0	Parent=Os01t0869500-01
Chr01	irgsp1_rep	CDS	37686900	37687097	.	-	0	Parent=Os01t0869500-01
Chr01	irgsp1_rep	three_prime_UTR	37686752	37686899	.	-	.	Parent=Os01t0869500-01
Chr01	irgsp1_rep	mRNA	37686059	37689425	.	-	.	ID=Os01t0869500-02;Name=Os01t0869500-02;Locus_id=Os01g0869500;Note=Plant nuclear matrix 1 family protein.;Transcript_evidence=AK106718 (DDBJ%2C Best hit);ORF_evidence=Q94G01 (UniProt);InterPro=Plant nuclear matrix 1 (IPR010604);NIAS_FLcDNA=002-114-G03;Expression=AK106718;TENOR=Os01t0869500-02;KEGG=Os01t0869500-02
Chr01	irgsp1_rep	five_prime_UTR	37689345	37689425	.	-	.	Parent=Os01t0869500-02
Chr01	irgsp1_rep	CDS	37689211	37689344	.	-	0	Parent=Os01t0869500-02
Chr01	irgsp1_rep	CDS	37688976	37689061	.	-	1	Parent=Os01t0869500-02
Chr01	irgsp1_rep	CDS	37688823	37688884	.	-	2	Parent=Os01t0869500-02
Chr01	irgsp1_rep	CDS	37688581	37688672	.	-	0	Parent=Os01t0869500-02
Chr01	irgsp1_rep	CDS	37688162	37688287	.	-	1	Parent=Os01t0869500-02
Chr01	irgsp1_rep	CDS	37687946	37688036	.	-	1	Parent=Os01t0869500-02
Chr01	irgsp1_rep	CDS	37687752	37687859	.	-	0	Parent=Os01t0869500-02
Chr01	irgsp1_rep	CDS	37687489	37687587	.	-	0	Parent=Os01t0869500-02
Chr01	irgsp1_rep	CDS	37686900	37687097	.	-	0	Parent=Os01t0869500-02
Chr01	irgsp1_rep	three_prime_UTR	37686422	37686899	.	-	.	Parent=Os01t0869500-02
Chr01	irgsp1_rep	three_prime_UTR	37686059	37686330	.	-	.	Parent=Os01t0869500-02
Chr01	irgsp1_rep	mRNA	37686769	37689346	.	+	.	ID=Os01t0869550-00;Name=Os01t0869550-00;Locus_id=Os01g0869550;Note=Conserved hypothetical protein.;Transcript_evidence=BT017027 (DDBJ);ORF_evidence=A2WXD6 (UniProt);TENOR=Os01t0869550-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	37686769	37687087	.	+	0	Parent=Os01t0869550-00
Chr01	irgsp1_rep	CDS	37687477	37687526	.	+	2	Parent=Os01t0869550-00
Chr01	irgsp1_rep	three_prime_UTR	37687527	37687570	.	+	.	Parent=Os01t0869550-00
Chr01	irgsp1_rep	three_prime_UTR	37687729	37687853	.	+	.	Parent=Os01t0869550-00
Chr01	irgsp1_rep	three_prime_UTR	37687939	37688024	.	+	.	Parent=Os01t0869550-00
Chr01	irgsp1_rep	three_prime_UTR	37688152	37688287	.	+	.	Parent=Os01t0869550-00
Chr01	irgsp1_rep	three_prime_UTR	37688581	37688657	.	+	.	Parent=Os01t0869550-00
Chr01	irgsp1_rep	three_prime_UTR	37688805	37688884	.	+	.	Parent=Os01t0869550-00
Chr01	irgsp1_rep	three_prime_UTR	37688976	37689060	.	+	.	Parent=Os01t0869550-00
Chr01	irgsp1_rep	three_prime_UTR	37689210	37689346	.	+	.	Parent=Os01t0869550-00
Chr01	irgsp1_rep	mRNA	37690326	37693116	.	+	.	ID=Os01t0869600-01;Name=Os01t0869600-01;Locus_id=Os01g0869600;Note=TRAM%2C LAG1 and CLN8 homology domain containing protein.;Transcript_evidence=AK060596 (DDBJ%2C Best hit),AK070678 (DDBJ%2C Best hit);ORF_evidence=B8A6Z0 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=TRAM/LAG1/CLN8 homology domain (IPR006634);NIAS_FLcDNA=001-024-G04,J023061I22;TENOR=Os01t0869600-01
Chr01	irgsp1_rep	five_prime_UTR	37690326	37690407	.	+	.	Parent=Os01t0869600-01
Chr01	irgsp1_rep	CDS	37690408	37690663	.	+	0	Parent=Os01t0869600-01
Chr01	irgsp1_rep	CDS	37691657	37691934	.	+	2	Parent=Os01t0869600-01
Chr01	irgsp1_rep	CDS	37692606	37692908	.	+	0	Parent=Os01t0869600-01
Chr01	irgsp1_rep	three_prime_UTR	37692909	37693116	.	+	.	Parent=Os01t0869600-01
Chr01	irgsp1_rep	mRNA	37695077	37696475	.	-	.	ID=Os01t0869750-01;Name=Os01t0869750-01;Locus_id=Os01g0869750;Note=Conserved hypothetical protein.;Transcript_evidence=AK288119 (DDBJ%2C Best hit);ORF_evidence=NP_001172656.1 (RefSeq);NIAS_FLcDNA=J080051I03;TENOR=Os01t0869750-01;KEGG=Os01t0869750-01
Chr01	irgsp1_rep	five_prime_UTR	37696422	37696475	.	-	.	Parent=Os01t0869750-01
Chr01	irgsp1_rep	CDS	37696098	37696421	.	-	0	Parent=Os01t0869750-01
Chr01	irgsp1_rep	three_prime_UTR	37696062	37696097	.	-	.	Parent=Os01t0869750-01
Chr01	irgsp1_rep	three_prime_UTR	37695077	37695181	.	-	.	Parent=Os01t0869750-01
Chr01	irgsp1_rep	mRNA	37697024	37699582	.	+	.	ID=Os01t0869800-01;Name=Os01t0869800-01;Locus_id=Os01g0869800;RAP-DB Gene Symbol Synonym(s)=PSBS1%2C OsPsbS1%2C PsbS1;RAP-DB Gene Name Synonym(s)=rice PsbS homologue 1;CGSNL Gene Symbol=PSBS1;Oryzabase Gene Symbol Synonym(s)=OsPsbS1%2C PsbS1%2C psbS%2C OsPSBS;Oryzabase Gene Name Synonym(s)=rice PsbS homologue 1;Note=22-kDa Photosystem II protein%2C Photoprotection;Transcript_evidence=AK058284,AK071827,AK104275;ORF_evidence=Q943K1;InterPro=Chlorophyll A-B binding protein (IPR022796),Chlorophyll a/b binding protein domain (IPR023329);NIAS_FLcDNA=001-013-D09,J023118A05,001-002-B11;Manual Curation=November 10%2C 2014;Literature_PMID=25342550;Oryzabase=9621;TENOR=Os01t0869800-01
Chr01	irgsp1_rep	five_prime_UTR	37697024	37697108	.	+	.	Parent=Os01t0869800-01
Chr01	irgsp1_rep	CDS	37697109	37697306	.	+	0	Parent=Os01t0869800-01
Chr01	irgsp1_rep	CDS	37697423	37697539	.	+	0	Parent=Os01t0869800-01
Chr01	irgsp1_rep	CDS	37698919	37699410	.	+	0	Parent=Os01t0869800-01
Chr01	irgsp1_rep	three_prime_UTR	37699411	37699582	.	+	.	Parent=Os01t0869800-01
Chr01	irgsp1_rep	mRNA	37710241	37714835	.	+	.	ID=Os01t0869900-01;Name=Os01t0869900-01;Locus_id=Os01g0869900;RAP-DB Gene Symbol Synonym(s)=SAPK4%2C OsSAPK4;RAP-DB Gene Name Synonym(s)=STRESS/ABA-ACTIVATED PROTEIN KINASE 4%2C stress/ABA-activated protein kinase 4%2C Stress-Activated Protein Kinase 4;CGSNL Gene Symbol=SAPK4;CGSNL Gene Name=STRESS/ABA-ACTIVATED PROTEIN KINASE 4;Oryzabase Gene Symbol Synonym(s)=OsSAPK4;Oryzabase Gene Name Synonym(s)=stress/ABA-activated protein kinase 4%2C Stress-Activated Protein Kinase 4;Note=Serine/threonine protein kinase%2C Hyperosmotic stress response;Transcript_evidence=AB125305;ORF_evidence=Q5N942;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine/threonine/dual specificity protein kinase%2C catalytic  domain (IPR002290),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);Manual Curation=December 14%2C 2015;Literature_PMID=15084714;Oryzabase=9812;TENOR=Os01t0869900-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	37710241	37710436	.	+	.	Parent=Os01t0869900-01
Chr01	irgsp1_rep	CDS	37710437	37710556	.	+	0	Parent=Os01t0869900-01
Chr01	irgsp1_rep	CDS	37710711	37710785	.	+	0	Parent=Os01t0869900-01
Chr01	irgsp1_rep	CDS	37711339	37711440	.	+	0	Parent=Os01t0869900-01
Chr01	irgsp1_rep	CDS	37711533	37711586	.	+	0	Parent=Os01t0869900-01
Chr01	irgsp1_rep	CDS	37711771	37711863	.	+	0	Parent=Os01t0869900-01
Chr01	irgsp1_rep	CDS	37711956	37712048	.	+	0	Parent=Os01t0869900-01
Chr01	irgsp1_rep	CDS	37713891	37713995	.	+	0	Parent=Os01t0869900-01
Chr01	irgsp1_rep	CDS	37714097	37714195	.	+	0	Parent=Os01t0869900-01
Chr01	irgsp1_rep	CDS	37714299	37714640	.	+	0	Parent=Os01t0869900-01
Chr01	irgsp1_rep	three_prime_UTR	37714641	37714835	.	+	.	Parent=Os01t0869900-01
Chr01	irgsp1_rep	mRNA	37714857	37720652	.	-	.	ID=Os01t0870100-01;Name=Os01t0870100-01;Locus_id=Os01g0870100;CGSNL Gene Symbol=POLLUX;CGSNL Gene Name=POLLUX;Oryzabase Gene Symbol Synonym(s)=OsPOLLUX%2C Os-POLLUX;Oryzabase Gene Name Synonym(s)=Probable ion channel DMI1%2C chloroplastic;Note=Ion channel DMI1.%2CCation channel protein.;Transcript_evidence=AK067564 (DDBJ%2C Best hit);ORF_evidence=Q5H8A5 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=CASTOR/POLLUX/SYM8 ion channels (IPR010420),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013112F04;Oryzabase=8206;Expression=AK067564;TENOR=Os01t0870100-01;KEGG=Os01t0870100-01
Chr01	irgsp1_rep	five_prime_UTR	37720595	37720652	.	-	.	Parent=Os01t0870100-01
Chr01	irgsp1_rep	CDS	37720016	37720594	.	-	0	Parent=Os01t0870100-01
Chr01	irgsp1_rep	CDS	37719842	37719910	.	-	0	Parent=Os01t0870100-01
Chr01	irgsp1_rep	CDS	37719123	37719740	.	-	0	Parent=Os01t0870100-01
Chr01	irgsp1_rep	CDS	37718472	37718654	.	-	0	Parent=Os01t0870100-01
Chr01	irgsp1_rep	CDS	37718284	37718343	.	-	0	Parent=Os01t0870100-01
Chr01	irgsp1_rep	CDS	37718005	37718208	.	-	0	Parent=Os01t0870100-01
Chr01	irgsp1_rep	CDS	37717625	37717873	.	-	0	Parent=Os01t0870100-01
Chr01	irgsp1_rep	CDS	37717406	37717504	.	-	0	Parent=Os01t0870100-01
Chr01	irgsp1_rep	CDS	37717128	37717322	.	-	0	Parent=Os01t0870100-01
Chr01	irgsp1_rep	CDS	37716644	37716736	.	-	0	Parent=Os01t0870100-01
Chr01	irgsp1_rep	CDS	37716299	37716562	.	-	0	Parent=Os01t0870100-01
Chr01	irgsp1_rep	CDS	37715908	37716118	.	-	0	Parent=Os01t0870100-01
Chr01	irgsp1_rep	CDS	37715482	37715555	.	-	2	Parent=Os01t0870100-01
Chr01	irgsp1_rep	three_prime_UTR	37714857	37715481	.	-	.	Parent=Os01t0870100-01
Chr01	irgsp1_rep	mRNA	37715574	37720649	.	-	.	ID=Os01t0870100-02;Name=Os01t0870100-02;Locus_id=Os01g0870100;CGSNL Gene Symbol=POLLUX;CGSNL Gene Name=POLLUX;Oryzabase Gene Symbol Synonym(s)=OsPOLLUX%2C Os-POLLUX;Oryzabase Gene Name Synonym(s)=Probable ion channel DMI1%2C chloroplastic;Note=Similar to DMI1 protein homologue.;Transcript_evidence=AK072312 (DDBJ%2C Best hit);ORF_evidence=Q5H8A5 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=CASTOR/POLLUX/SYM8 ion channels (IPR010420),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023022A12;Oryzabase=8206;TENOR=Os01t0870100-02
Chr01	irgsp1_rep	five_prime_UTR	37720595	37720649	.	-	.	Parent=Os01t0870100-02
Chr01	irgsp1_rep	CDS	37720016	37720594	.	-	0	Parent=Os01t0870100-02
Chr01	irgsp1_rep	CDS	37719842	37719910	.	-	0	Parent=Os01t0870100-02
Chr01	irgsp1_rep	CDS	37719123	37719740	.	-	0	Parent=Os01t0870100-02
Chr01	irgsp1_rep	CDS	37718472	37718654	.	-	0	Parent=Os01t0870100-02
Chr01	irgsp1_rep	CDS	37718284	37718343	.	-	0	Parent=Os01t0870100-02
Chr01	irgsp1_rep	CDS	37718005	37718208	.	-	0	Parent=Os01t0870100-02
Chr01	irgsp1_rep	CDS	37717625	37717873	.	-	0	Parent=Os01t0870100-02
Chr01	irgsp1_rep	CDS	37717406	37717504	.	-	0	Parent=Os01t0870100-02
Chr01	irgsp1_rep	CDS	37717128	37717322	.	-	0	Parent=Os01t0870100-02
Chr01	irgsp1_rep	CDS	37716644	37716736	.	-	0	Parent=Os01t0870100-02
Chr01	irgsp1_rep	CDS	37716299	37716562	.	-	0	Parent=Os01t0870100-02
Chr01	irgsp1_rep	CDS	37715900	37716118	.	-	0	Parent=Os01t0870100-02
Chr01	irgsp1_rep	three_prime_UTR	37715574	37715899	.	-	.	Parent=Os01t0870100-02
Chr01	irgsp1_rep	mRNA	37715574	37720105	.	-	.	ID=Os01t0870100-03;Name=Os01t0870100-03;Locus_id=Os01g0870100;CGSNL Gene Symbol=POLLUX;CGSNL Gene Name=POLLUX;Oryzabase Gene Symbol Synonym(s)=OsPOLLUX%2C Os-POLLUX;Oryzabase Gene Name Synonym(s)=Probable ion channel DMI1%2C chloroplastic;Note=Similar to Ion channel POLLUX.;Transcript_evidence=AK103428 (DDBJ%2C Best hit);ORF_evidence=Q5H8A5 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=CASTOR/POLLUX/SYM8 ion channels (IPR010420),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033128L21;Oryzabase=8206;TENOR=Os01t0870100-03
Chr01	irgsp1_rep	five_prime_UTR	37720103	37720105	.	-	.	Parent=Os01t0870100-03
Chr01	irgsp1_rep	CDS	37720016	37720102	.	-	0	Parent=Os01t0870100-03
Chr01	irgsp1_rep	CDS	37719842	37719910	.	-	0	Parent=Os01t0870100-03
Chr01	irgsp1_rep	CDS	37719123	37719740	.	-	0	Parent=Os01t0870100-03
Chr01	irgsp1_rep	CDS	37718472	37718654	.	-	0	Parent=Os01t0870100-03
Chr01	irgsp1_rep	CDS	37718284	37718343	.	-	0	Parent=Os01t0870100-03
Chr01	irgsp1_rep	CDS	37718005	37718208	.	-	0	Parent=Os01t0870100-03
Chr01	irgsp1_rep	CDS	37717625	37717873	.	-	0	Parent=Os01t0870100-03
Chr01	irgsp1_rep	CDS	37717406	37717504	.	-	0	Parent=Os01t0870100-03
Chr01	irgsp1_rep	CDS	37717128	37717322	.	-	0	Parent=Os01t0870100-03
Chr01	irgsp1_rep	CDS	37716644	37716736	.	-	0	Parent=Os01t0870100-03
Chr01	irgsp1_rep	CDS	37716299	37716562	.	-	0	Parent=Os01t0870100-03
Chr01	irgsp1_rep	CDS	37715900	37716118	.	-	0	Parent=Os01t0870100-03
Chr01	irgsp1_rep	three_prime_UTR	37715574	37715899	.	-	.	Parent=Os01t0870100-03
Chr01	irgsp1_rep	mRNA	37722462	37726352	.	+	.	ID=Os01t0870201-00;Name=Os01t0870201-00;Locus_id=Os01g0870201;Oryzabase Gene Symbol Synonym(s)=XRCC2%2C OsXRCC2;Note=Similar to GPI transamidase subunit PIG-U family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001148568.1 (RefSeq);GO=Biological Process: GPI anchor biosynthetic process (GO:0006506),Cellular Component: endoplasmic reticulum membrane (GO:0005789),Cellular Component: integral to membrane (GO:0016021);InterPro=GPI transamidase subunit PIG-U (IPR009600);Oryzabase=22477;TENOR=Os01t0870201-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	37722462	37722609	.	+	0	Parent=Os01t0870201-00
Chr01	irgsp1_rep	CDS	37722650	37722697	.	+	2	Parent=Os01t0870201-00
Chr01	irgsp1_rep	CDS	37723713	37723817	.	+	2	Parent=Os01t0870201-00
Chr01	irgsp1_rep	CDS	37724165	37724299	.	+	2	Parent=Os01t0870201-00
Chr01	irgsp1_rep	CDS	37724496	37724572	.	+	2	Parent=Os01t0870201-00
Chr01	irgsp1_rep	CDS	37724675	37724758	.	+	0	Parent=Os01t0870201-00
Chr01	irgsp1_rep	CDS	37725685	37725742	.	+	0	Parent=Os01t0870201-00
Chr01	irgsp1_rep	CDS	37725851	37725936	.	+	2	Parent=Os01t0870201-00
Chr01	irgsp1_rep	CDS	37726011	37726067	.	+	0	Parent=Os01t0870201-00
Chr01	irgsp1_rep	CDS	37726278	37726352	.	+	0	Parent=Os01t0870201-00
Chr01	irgsp1_rep	mRNA	37727421	37734780	.	+	.	ID=Os01t0870300-01;Name=Os01t0870300-01;Locus_id=Os01g0870300;CGSNL Gene Symbol=AMT3%3B1;CGSNL Gene Name=AMMONIUM TRANSPORTER 3 MEMBER 1;Oryzabase Gene Symbol Synonym(s)=OsAMT3%3B1%2C AMT3-1%2C OsAMT3.1%2C OsAMT2%3B2;Oryzabase Gene Name Synonym(s)=Ammonium transporter 3 member 1;Note=Hypothetical conserved gene.;Transcript_evidence=AK121878 (DDBJ%2C Best hit);ORF_evidence=NP_001169396.1 (RefSeq);NIAS_FLcDNA=J033104L09;Oryzabase=3066;Expression=AK121878;TENOR=Os01t0870300-01;KEGG=Os01t0870300-01
Chr01	irgsp1_rep	five_prime_UTR	37727421	37727497	.	+	.	Parent=Os01t0870300-01
Chr01	irgsp1_rep	CDS	37727498	37727695	.	+	0	Parent=Os01t0870300-01
Chr01	irgsp1_rep	CDS	37728241	37728388	.	+	0	Parent=Os01t0870300-01
Chr01	irgsp1_rep	CDS	37728681	37728820	.	+	2	Parent=Os01t0870300-01
Chr01	irgsp1_rep	CDS	37729705	37729778	.	+	0	Parent=Os01t0870300-01
Chr01	irgsp1_rep	CDS	37730802	37730934	.	+	1	Parent=Os01t0870300-01
Chr01	irgsp1_rep	three_prime_UTR	37730935	37730943	.	+	.	Parent=Os01t0870300-01
Chr01	irgsp1_rep	three_prime_UTR	37731237	37731339	.	+	.	Parent=Os01t0870300-01
Chr01	irgsp1_rep	three_prime_UTR	37731533	37731569	.	+	.	Parent=Os01t0870300-01
Chr01	irgsp1_rep	three_prime_UTR	37731646	37731755	.	+	.	Parent=Os01t0870300-01
Chr01	irgsp1_rep	three_prime_UTR	37731882	37732025	.	+	.	Parent=Os01t0870300-01
Chr01	irgsp1_rep	three_prime_UTR	37732950	37733020	.	+	.	Parent=Os01t0870300-01
Chr01	irgsp1_rep	three_prime_UTR	37733905	37734780	.	+	.	Parent=Os01t0870300-01
Chr01	irgsp1_rep	mRNA	37727434	37737822	.	+	.	ID=Os01t0870300-02;Name=Os01t0870300-02;Locus_id=Os01g0870300;CGSNL Gene Symbol=AMT3%3B1;CGSNL Gene Name=AMMONIUM TRANSPORTER 3 MEMBER 1;Oryzabase Gene Symbol Synonym(s)=OsAMT3%3B1%2C AMT3-1%2C OsAMT3.1%2C OsAMT2%3B2;Oryzabase Gene Name Synonym(s)=Ammonium transporter 3 member 1;Note=Ammonium transporter.;Transcript_evidence=AK120352 (DDBJ%2C Best hit);ORF_evidence=Q84KJ6 (UniProt);GO=Biological Process: ammonium transmembrane transport (GO:0072488),Cellular Component: membrane (GO:0016020),Molecular Function: ammonium transmembrane transporter activity (GO:0008519);InterPro=Ammonium transporter (IPR001905),Ammonium transporter%2C conserved site (IPR018047),Ammonium transporter AmtB-like (IPR024041);NIAS_FLcDNA=J013066B21;Oryzabase=3066;Expression=AK120352;TENOR=Os01t0870300-02;KEGG=Os01t0870300-02
Chr01	irgsp1_rep	five_prime_UTR	37727434	37727695	.	+	.	Parent=Os01t0870300-02
Chr01	irgsp1_rep	five_prime_UTR	37728241	37728388	.	+	.	Parent=Os01t0870300-02
Chr01	irgsp1_rep	five_prime_UTR	37729708	37729778	.	+	.	Parent=Os01t0870300-02
Chr01	irgsp1_rep	five_prime_UTR	37730806	37730943	.	+	.	Parent=Os01t0870300-02
Chr01	irgsp1_rep	five_prime_UTR	37731237	37731339	.	+	.	Parent=Os01t0870300-02
Chr01	irgsp1_rep	five_prime_UTR	37731533	37731569	.	+	.	Parent=Os01t0870300-02
Chr01	irgsp1_rep	five_prime_UTR	37731646	37731755	.	+	.	Parent=Os01t0870300-02
Chr01	irgsp1_rep	five_prime_UTR	37731882	37732025	.	+	.	Parent=Os01t0870300-02
Chr01	irgsp1_rep	five_prime_UTR	37733905	37735279	.	+	.	Parent=Os01t0870300-02
Chr01	irgsp1_rep	CDS	37735280	37736237	.	+	0	Parent=Os01t0870300-02
Chr01	irgsp1_rep	CDS	37737103	37737641	.	+	2	Parent=Os01t0870300-02
Chr01	irgsp1_rep	three_prime_UTR	37737642	37737822	.	+	.	Parent=Os01t0870300-02
Chr01	irgsp1_rep	mRNA	37735184	37737641	.	-	.	ID=Os01t0870350-00;Name=Os01t0870350-00;Locus_id=Os01g0870350;Note=Hypothetical protein.;Transcript_evidence=BT054429 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0870350-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	37737099	37737641	.	-	0	Parent=Os01t0870350-00
Chr01	irgsp1_rep	three_prime_UTR	37737076	37737098	.	-	.	Parent=Os01t0870350-00
Chr01	irgsp1_rep	three_prime_UTR	37735184	37736294	.	-	.	Parent=Os01t0870350-00
Chr01	irgsp1_rep	mRNA	37739465	37742721	.	-	.	ID=Os01t0870400-00;Name=Os01t0870400-00;Locus_id=Os01g0870400;Note=Similar to S-domain class receptor-like kinase3.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001105655.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),S-receptor-like serine/threonine-protein kinase (IPR024171);TENOR=Os01t0870400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	37742544	37742721	.	-	0	Parent=Os01t0870400-00
Chr01	irgsp1_rep	CDS	37739465	37741761	.	-	2	Parent=Os01t0870400-00
Chr01	irgsp1_rep	mRNA	37745644	37748575	.	-	.	ID=Os01t0870500-01;Name=Os01t0870500-01;Locus_id=Os01g0870500;Note=Similar to S-domain class receptor-like kinase3.;Transcript_evidence=AK067624 (DDBJ%2C Best hit);ORF_evidence=NP_001105655.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013111K08;TENOR=Os01t0870500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	37748382	37748575	.	-	.	Parent=Os01t0870500-01
Chr01	irgsp1_rep	five_prime_UTR	37747025	37748030	.	-	.	Parent=Os01t0870500-01
Chr01	irgsp1_rep	CDS	37745768	37747024	.	-	0	Parent=Os01t0870500-01
Chr01	irgsp1_rep	three_prime_UTR	37745644	37745767	.	-	.	Parent=Os01t0870500-01
Chr01	irgsp1_rep	mRNA	37745526	37748506	.	-	.	ID=Os01t0870500-02;Name=Os01t0870500-02;Locus_id=Os01g0870500;Note=Similar to S-domain class receptor-like kinase3.;Transcript_evidence=AK065439 (DDBJ%2C Best hit);ORF_evidence=NP_001105655.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013025D05;TENOR=Os01t0870500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	37748382	37748506	.	-	.	Parent=Os01t0870500-02
Chr01	irgsp1_rep	five_prime_UTR	37747025	37748030	.	-	.	Parent=Os01t0870500-02
Chr01	irgsp1_rep	CDS	37745768	37747024	.	-	0	Parent=Os01t0870500-02
Chr01	irgsp1_rep	three_prime_UTR	37745526	37745767	.	-	.	Parent=Os01t0870500-02
Chr01	irgsp1_rep	mRNA	37760054	37762238	.	-	.	ID=Os01t0870750-00;Name=Os01t0870750-00;Locus_id=Os01g0870750;Note=Hypothetical protein.;Transcript_evidence=tplb0036o12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0870750-00
Chr01	irgsp1_rep	five_prime_UTR	37761038	37762238	.	-	.	Parent=Os01t0870750-00
Chr01	irgsp1_rep	CDS	37760854	37761037	.	-	0	Parent=Os01t0870750-00
Chr01	irgsp1_rep	CDS	37760281	37760699	.	-	2	Parent=Os01t0870750-00
Chr01	irgsp1_rep	three_prime_UTR	37760054	37760280	.	-	.	Parent=Os01t0870750-00
Chr01	irgsp1_rep	mRNA	37760258	37762299	.	+	.	ID=Os01t0871000-00;Name=Os01t0871000-00;Locus_id=Os01g0871000;Note=Similar to S-domain class receptor-like kinase3.;Transcript_evidence=tplb0056i22 (Wheat FLcDNA);ORF_evidence=NP_001105655.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os01t0871000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	37760258	37760385	.	+	.	Parent=Os01t0871000-00
Chr01	irgsp1_rep	five_prime_UTR	37760452	37760508	.	+	.	Parent=Os01t0871000-00
Chr01	irgsp1_rep	CDS	37760509	37762299	.	+	0	Parent=Os01t0871000-00
Chr01	irgsp1_rep	mRNA	37763432	37770402	.	+	.	ID=Os01t0871100-01;Name=Os01t0871100-01;Locus_id=Os01g0871100;Note=Alpha/beta hydrolase fold-1 domain containing protein.;Transcript_evidence=AK064743 (DDBJ%2C Best hit);ORF_evidence=NP_001151781.1 (RefSeq);NIAS_FLcDNA=002-120-E01;Expression=AK064743;TENOR=Os01t0871100-01;KEGG=Os01t0871100-01
Chr01	irgsp1_rep	five_prime_UTR	37763432	37763612	.	+	.	Parent=Os01t0871100-01
Chr01	irgsp1_rep	CDS	37763613	37763878	.	+	0	Parent=Os01t0871100-01
Chr01	irgsp1_rep	CDS	37764059	37764148	.	+	1	Parent=Os01t0871100-01
Chr01	irgsp1_rep	CDS	37765622	37765689	.	+	1	Parent=Os01t0871100-01
Chr01	irgsp1_rep	CDS	37765762	37765844	.	+	2	Parent=Os01t0871100-01
Chr01	irgsp1_rep	CDS	37765967	37766056	.	+	0	Parent=Os01t0871100-01
Chr01	irgsp1_rep	CDS	37766261	37766383	.	+	0	Parent=Os01t0871100-01
Chr01	irgsp1_rep	CDS	37767472	37767549	.	+	0	Parent=Os01t0871100-01
Chr01	irgsp1_rep	CDS	37768173	37768258	.	+	0	Parent=Os01t0871100-01
Chr01	irgsp1_rep	CDS	37768400	37768448	.	+	1	Parent=Os01t0871100-01
Chr01	irgsp1_rep	CDS	37768891	37768947	.	+	0	Parent=Os01t0871100-01
Chr01	irgsp1_rep	CDS	37769260	37769390	.	+	0	Parent=Os01t0871100-01
Chr01	irgsp1_rep	CDS	37769472	37769555	.	+	1	Parent=Os01t0871100-01
Chr01	irgsp1_rep	CDS	37769675	37769741	.	+	1	Parent=Os01t0871100-01
Chr01	irgsp1_rep	CDS	37769839	37770315	.	+	0	Parent=Os01t0871100-01
Chr01	irgsp1_rep	three_prime_UTR	37770316	37770402	.	+	.	Parent=Os01t0871100-01
Chr01	irgsp1_rep	mRNA	37769263	37770302	.	-	.	ID=Os01t0871150-00;Name=Os01t0871150-00;Locus_id=Os01g0871150;Note=Hypothetical gene.;Transcript_evidence=EU950265 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0871150-00
Chr01	irgsp1_rep	five_prime_UTR	37770136	37770302	.	-	.	Parent=Os01t0871150-00
Chr01	irgsp1_rep	CDS	37769785	37770135	.	-	0	Parent=Os01t0871150-00
Chr01	irgsp1_rep	CDS	37769529	37769564	.	-	0	Parent=Os01t0871150-00
Chr01	irgsp1_rep	three_prime_UTR	37769470	37769528	.	-	.	Parent=Os01t0871150-00
Chr01	irgsp1_rep	three_prime_UTR	37769263	37769388	.	-	.	Parent=Os01t0871150-00
Chr01	irgsp1_rep	mRNA	37773994	37778565	.	+	.	ID=Os01t0871200-01;Name=Os01t0871200-01;Locus_id=Os01g0871200;Oryzabase Gene Symbol Synonym(s)=OsbHLH033%2C bHLH033%2C bHLH33%2C OsZFP%2C ZFP;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 033%2C zinc finger protein;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK065024 (DDBJ%2C Best hit);ORF_evidence=F1DK81 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J013001G09;Oryzabase=15324;Expression=AK065024;TENOR=Os01t0871200-01;KEGG=Os01t0871200-01
Chr01	irgsp1_rep	five_prime_UTR	37773994	37774093	.	+	.	Parent=Os01t0871200-01
Chr01	irgsp1_rep	five_prime_UTR	37776567	37776668	.	+	.	Parent=Os01t0871200-01
Chr01	irgsp1_rep	CDS	37776669	37778237	.	+	0	Parent=Os01t0871200-01
Chr01	irgsp1_rep	three_prime_UTR	37778238	37778565	.	+	.	Parent=Os01t0871200-01
Chr01	irgsp1_rep	mRNA	37774063	37778430	.	+	.	ID=Os01t0871200-02;Name=Os01t0871200-02;Locus_id=Os01g0871200;Oryzabase Gene Symbol Synonym(s)=OsbHLH033%2C bHLH033%2C bHLH33%2C OsZFP%2C ZFP;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 033%2C zinc finger protein;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK072211 (DDBJ%2C Best hit);ORF_evidence=F1DK81 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J013161E15;Oryzabase=15324;Expression=AK072211;TENOR=Os01t0871200-02;KEGG=Os01t0871200-02
Chr01	irgsp1_rep	five_prime_UTR	37774063	37774093	.	+	.	Parent=Os01t0871200-02
Chr01	irgsp1_rep	five_prime_UTR	37776567	37776668	.	+	.	Parent=Os01t0871200-02
Chr01	irgsp1_rep	CDS	37776669	37778237	.	+	0	Parent=Os01t0871200-02
Chr01	irgsp1_rep	three_prime_UTR	37778238	37778430	.	+	.	Parent=Os01t0871200-02
Chr01	irgsp1_rep	mRNA	37774063	37778545	.	+	.	ID=Os01t0871200-03;Name=Os01t0871200-03;Locus_id=Os01g0871200;Oryzabase Gene Symbol Synonym(s)=OsbHLH033%2C bHLH033%2C bHLH33%2C OsZFP%2C ZFP;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 033%2C zinc finger protein;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK100840 (DDBJ%2C Best hit);ORF_evidence=F1DK81 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J023123F03;Oryzabase=15324;Expression=AK100840;TENOR=Os01t0871200-03;KEGG=Os01t0871200-03
Chr01	irgsp1_rep	five_prime_UTR	37774063	37775902	.	+	.	Parent=Os01t0871200-03
Chr01	irgsp1_rep	five_prime_UTR	37776567	37776668	.	+	.	Parent=Os01t0871200-03
Chr01	irgsp1_rep	CDS	37776669	37778237	.	+	0	Parent=Os01t0871200-03
Chr01	irgsp1_rep	three_prime_UTR	37778238	37778545	.	+	.	Parent=Os01t0871200-03
Chr01	irgsp1_rep	mRNA	37775728	37778542	.	+	.	ID=Os01t0871200-04;Name=Os01t0871200-04;Locus_id=Os01g0871200;Oryzabase Gene Symbol Synonym(s)=OsbHLH033%2C bHLH033%2C bHLH33%2C OsZFP%2C ZFP;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 033%2C zinc finger protein;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK119629 (DDBJ%2C Best hit);ORF_evidence=F1DK81 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=002-130-C03;Oryzabase=15324;Expression=AK119629;TENOR=Os01t0871200-04;KEGG=Os01t0871200-04
Chr01	irgsp1_rep	five_prime_UTR	37775728	37775902	.	+	.	Parent=Os01t0871200-04
Chr01	irgsp1_rep	five_prime_UTR	37776567	37776668	.	+	.	Parent=Os01t0871200-04
Chr01	irgsp1_rep	CDS	37776669	37778237	.	+	0	Parent=Os01t0871200-04
Chr01	irgsp1_rep	three_prime_UTR	37778238	37778542	.	+	.	Parent=Os01t0871200-04
Chr01	irgsp1_rep	mRNA	37779512	37782829	.	+	.	ID=Os01t0871300-01;Name=Os01t0871300-01;Locus_id=Os01g0871300;CGSNL Gene Symbol=PPAAT;CGSNL Gene Name=PREPHENATE AMINOTRANSFERASE;Oryzabase Gene Symbol Synonym(s)=OsPPA-AT%2C PPA-AT;Oryzabase Gene Name Synonym(s)=prephenate aminotransferase;Note=Pyridoxal phosphate-dependent transferase%2C major region domain containing protein.;Transcript_evidence=AK059062 (DDBJ%2C Best hit);ORF_evidence=B6TK79 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Biological Process: 1-aminocyclopropane-1-carboxylate biosynthetic process (GO:0042218),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: 1-aminocyclopropane-1-carboxylate synthase activity (GO:0016847),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=1-aminocyclopropane-1-carboxylate synthase (IPR001176),Aminotransferases%2C class-I%2C pyridoxal-phosphate-binding site (IPR004838),Aminotransferase%2C class I/classII (IPR004839),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=001-021-G03;Oryzabase=22774;Expression=AK059062;TENOR=Os01t0871300-01;KEGG=Os01t0871300-01
Chr01	irgsp1_rep	five_prime_UTR	37779512	37779578	.	+	.	Parent=Os01t0871300-01
Chr01	irgsp1_rep	CDS	37779579	37779676	.	+	0	Parent=Os01t0871300-01
Chr01	irgsp1_rep	CDS	37779780	37779984	.	+	1	Parent=Os01t0871300-01
Chr01	irgsp1_rep	CDS	37780390	37780483	.	+	0	Parent=Os01t0871300-01
Chr01	irgsp1_rep	CDS	37780571	37780674	.	+	2	Parent=Os01t0871300-01
Chr01	irgsp1_rep	CDS	37781111	37781359	.	+	0	Parent=Os01t0871300-01
Chr01	irgsp1_rep	CDS	37781447	37781560	.	+	0	Parent=Os01t0871300-01
Chr01	irgsp1_rep	CDS	37781751	37781834	.	+	0	Parent=Os01t0871300-01
Chr01	irgsp1_rep	CDS	37782033	37782203	.	+	0	Parent=Os01t0871300-01
Chr01	irgsp1_rep	CDS	37782285	37782398	.	+	0	Parent=Os01t0871300-01
Chr01	irgsp1_rep	CDS	37782492	37782635	.	+	0	Parent=Os01t0871300-01
Chr01	irgsp1_rep	three_prime_UTR	37782636	37782829	.	+	.	Parent=Os01t0871300-01
Chr01	irgsp1_rep	mRNA	37779853	37782837	.	+	.	ID=Os01t0871300-02;Name=Os01t0871300-02;Locus_id=Os01g0871300;CGSNL Gene Symbol=PPAAT;CGSNL Gene Name=PREPHENATE AMINOTRANSFERASE;Oryzabase Gene Symbol Synonym(s)=OsPPA-AT%2C PPA-AT;Oryzabase Gene Name Synonym(s)=prephenate aminotransferase;Note=Similar to Aspartate aminotransferase.;Transcript_evidence=AK067545 (DDBJ%2C Best hit);ORF_evidence=B6TK79 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Biological Process: 1-aminocyclopropane-1-carboxylate biosynthetic process (GO:0042218),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: 1-aminocyclopropane-1-carboxylate synthase activity (GO:0016847),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=1-aminocyclopropane-1-carboxylate synthase (IPR001176),Aminotransferases%2C class-I%2C pyridoxal-phosphate-binding site (IPR004838),Aminotransferase%2C class I/classII (IPR004839),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J013111C16;Oryzabase=22774;Expression=AK067545;TENOR=Os01t0871300-02;KEGG=Os01t0871300-02
Chr01	irgsp1_rep	CDS	37779853	37779984	.	+	0	Parent=Os01t0871300-02
Chr01	irgsp1_rep	CDS	37780390	37780483	.	+	0	Parent=Os01t0871300-02
Chr01	irgsp1_rep	CDS	37780571	37780674	.	+	2	Parent=Os01t0871300-02
Chr01	irgsp1_rep	CDS	37781111	37781359	.	+	0	Parent=Os01t0871300-02
Chr01	irgsp1_rep	CDS	37781447	37781560	.	+	0	Parent=Os01t0871300-02
Chr01	irgsp1_rep	CDS	37781751	37781834	.	+	0	Parent=Os01t0871300-02
Chr01	irgsp1_rep	CDS	37782033	37782203	.	+	0	Parent=Os01t0871300-02
Chr01	irgsp1_rep	CDS	37782285	37782398	.	+	0	Parent=Os01t0871300-02
Chr01	irgsp1_rep	CDS	37782492	37782635	.	+	0	Parent=Os01t0871300-02
Chr01	irgsp1_rep	three_prime_UTR	37782636	37782837	.	+	.	Parent=Os01t0871300-02
Chr01	irgsp1_rep	mRNA	37783317	37785412	.	-	.	ID=Os01t0871350-01;Name=Os01t0871350-01;Locus_id=Os01g0871350;Note=Conserved hypothetical protein.;Transcript_evidence=AK242213 (DDBJ%2C Best hit);ORF_evidence=NP_001172668.1 (RefSeq);NIAS_FLcDNA=J075171L13;TENOR=Os01t0871350-01;KEGG=Os01t0871350-01
Chr01	irgsp1_rep	CDS	37785261	37785412	.	-	0	Parent=Os01t0871350-01
Chr01	irgsp1_rep	CDS	37783503	37783830	.	-	1	Parent=Os01t0871350-01
Chr01	irgsp1_rep	three_prime_UTR	37783317	37783502	.	-	.	Parent=Os01t0871350-01
Chr01	irgsp1_rep	mRNA	37789052	37790984	.	-	.	ID=Os01t0871400-01;Name=Os01t0871400-01;Locus_id=Os01g0871400;Note=Hypothetical protein.;Transcript_evidence=AK068758 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013159P21;Expression=AK068758;TENOR=Os01t0871400-01;KEGG=Os01t0871400-01
Chr01	irgsp1_rep	five_prime_UTR	37790769	37790984	.	-	.	Parent=Os01t0871400-01
Chr01	irgsp1_rep	five_prime_UTR	37789520	37789722	.	-	.	Parent=Os01t0871400-01
Chr01	irgsp1_rep	CDS	37789223	37789519	.	-	0	Parent=Os01t0871400-01
Chr01	irgsp1_rep	three_prime_UTR	37789052	37789222	.	-	.	Parent=Os01t0871400-01
Chr01	irgsp1_rep	mRNA	37790484	37792882	.	+	.	ID=Os01t0871500-01;Name=Os01t0871500-01;Locus_id=Os01g0871500;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=TGF-beta receptor%2C type I/II extracellular region family protein.;Transcript_evidence=AK068840 (DDBJ%2C Best hit);ORF_evidence=B6SWT0 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J013160B01;Oryzabase=23633;Expression=AK068840;TENOR=Os01t0871500-01;KEGG=Os01t0871500-01
Chr01	irgsp1_rep	five_prime_UTR	37790484	37790519	.	+	.	Parent=Os01t0871500-01
Chr01	irgsp1_rep	CDS	37790520	37790655	.	+	0	Parent=Os01t0871500-01
Chr01	irgsp1_rep	CDS	37790740	37790957	.	+	2	Parent=Os01t0871500-01
Chr01	irgsp1_rep	CDS	37791393	37791874	.	+	0	Parent=Os01t0871500-01
Chr01	irgsp1_rep	CDS	37791964	37792765	.	+	1	Parent=Os01t0871500-01
Chr01	irgsp1_rep	three_prime_UTR	37792766	37792882	.	+	.	Parent=Os01t0871500-01
Chr01	irgsp1_rep	mRNA	37795606	37797741	.	+	.	ID=Os01t0871600-01;Name=Os01t0871600-01;Locus_id=Os01g0871600;Oryzabase Gene Symbol Synonym(s)=OsPOT%2C POT%2C OsIROPT1%2C IROPT1;Oryzabase Gene Name Synonym(s)=Proton-dependent oligopeptide transporter family protein;Note=Similar to Peptide transporter PTR2-B.;Transcript_evidence=AK103248 (DDBJ%2C Best hit);ORF_evidence=B6SWT0 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J033123K24;Oryzabase=18459;TENOR=Os01t0871600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	37795606	37795607	.	+	.	Parent=Os01t0871600-01
Chr01	irgsp1_rep	CDS	37795608	37795737	.	+	0	Parent=Os01t0871600-01
Chr01	irgsp1_rep	CDS	37795827	37796044	.	+	2	Parent=Os01t0871600-01
Chr01	irgsp1_rep	CDS	37796121	37796560	.	+	0	Parent=Os01t0871600-01
Chr01	irgsp1_rep	CDS	37796657	37797503	.	+	1	Parent=Os01t0871600-01
Chr01	irgsp1_rep	three_prime_UTR	37797504	37797741	.	+	.	Parent=Os01t0871600-01
Chr01	irgsp1_rep	mRNA	37800956	37802110	.	+	.	ID=Os01t0871700-00;Name=Os01t0871700-00;Locus_id=Os01g0871700;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Oligopeptide transporter domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7F2J7 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);Oryzabase=23634;TENOR=Os01t0871700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	37800956	37801058	.	+	0	Parent=Os01t0871700-00
Chr01	irgsp1_rep	CDS	37801167	37801388	.	+	2	Parent=Os01t0871700-00
Chr01	irgsp1_rep	CDS	37801441	37801942	.	+	2	Parent=Os01t0871700-00
Chr01	irgsp1_rep	CDS	37802014	37802110	.	+	1	Parent=Os01t0871700-00
Chr01	irgsp1_rep	mRNA	37801164	37802792	.	-	.	ID=Os01t0871733-00;Name=Os01t0871733-00;Locus_id=Os01g0871733;Note=Hypothetical protein.;Transcript_evidence=tplb0043c19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0871733-00
Chr01	irgsp1_rep	five_prime_UTR	37802515	37802792	.	-	.	Parent=Os01t0871733-00
Chr01	irgsp1_rep	CDS	37802260	37802514	.	-	0	Parent=Os01t0871733-00
Chr01	irgsp1_rep	three_prime_UTR	37801474	37802259	.	-	.	Parent=Os01t0871733-00
Chr01	irgsp1_rep	three_prime_UTR	37801164	37801381	.	-	.	Parent=Os01t0871733-00
Chr01	irgsp1_rep	mRNA	37804021	37807126	.	+	.	ID=Os01t0871800-01;Name=Os01t0871800-01;Locus_id=Os01g0871800;Note=TGF-beta receptor%2C type I/II extracellular region family protein.;Transcript_evidence=AK120109 (DDBJ%2C Best hit),AK064787 (DDBJ%2C Best hit),AK067087 (DDBJ%2C Best hit);ORF_evidence=Q7F2J6 (UniProt);NIAS_FLcDNA=J013023O17,J013000B18,J013095A19;TENOR=Os01t0871800-01
Chr01	irgsp1_rep	five_prime_UTR	37804021	37804062	.	+	.	Parent=Os01t0871800-01
Chr01	irgsp1_rep	CDS	37804063	37804174	.	+	0	Parent=Os01t0871800-01
Chr01	irgsp1_rep	CDS	37804279	37804505	.	+	2	Parent=Os01t0871800-01
Chr01	irgsp1_rep	three_prime_UTR	37804506	37807126	.	+	.	Parent=Os01t0871800-01
Chr01	irgsp1_rep	mRNA	37810770	37812129	.	+	.	ID=Os01t0871900-00;Name=Os01t0871900-00;Locus_id=Os01g0871900;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Similar to POT family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001147599.1 (RefSeq);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109);Oryzabase=23635;TENOR=Os01t0871900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	37810770	37811341	.	+	0	Parent=Os01t0871900-00
Chr01	irgsp1_rep	CDS	37811367	37812129	.	+	1	Parent=Os01t0871900-00
Chr01	irgsp1_rep	mRNA	37814673	37816775	.	+	.	ID=Os01t0872000-01;Name=Os01t0872000-01;Locus_id=Os01g0872000;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=TGF-beta receptor%2C type I/II extracellular region family protein.;Transcript_evidence=AK102239 (DDBJ%2C Best hit);ORF_evidence=NP_001147599.1 (RefSeq);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J033088C23;Oryzabase=23636;Expression=AK102239;TENOR=Os01t0872000-01;KEGG=Os01t0872000-01
Chr01	irgsp1_rep	five_prime_UTR	37814673	37814694	.	+	.	Parent=Os01t0872000-01
Chr01	irgsp1_rep	CDS	37814695	37814791	.	+	0	Parent=Os01t0872000-01
Chr01	irgsp1_rep	CDS	37814902	37815119	.	+	2	Parent=Os01t0872000-01
Chr01	irgsp1_rep	CDS	37815223	37815752	.	+	0	Parent=Os01t0872000-01
Chr01	irgsp1_rep	CDS	37815848	37816616	.	+	1	Parent=Os01t0872000-01
Chr01	irgsp1_rep	three_prime_UTR	37816617	37816775	.	+	.	Parent=Os01t0872000-01
Chr01	irgsp1_rep	mRNA	37821284	37826818	.	+	.	ID=Os01t0872100-01;Name=Os01t0872100-01;Locus_id=Os01g0872100;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=TGF-beta receptor%2C type I/II extracellular region family protein.;Transcript_evidence=AK099405 (DDBJ%2C Best hit);ORF_evidence=NP_001147599.1 (RefSeq);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J013001K17;Oryzabase=23637;Expression=AK099405;TENOR=Os01t0872100-01;KEGG=Os01t0872100-01
Chr01	irgsp1_rep	five_prime_UTR	37821284	37821303	.	+	.	Parent=Os01t0872100-01
Chr01	irgsp1_rep	CDS	37821304	37821400	.	+	0	Parent=Os01t0872100-01
Chr01	irgsp1_rep	CDS	37821507	37821724	.	+	2	Parent=Os01t0872100-01
Chr01	irgsp1_rep	CDS	37825372	37825904	.	+	0	Parent=Os01t0872100-01
Chr01	irgsp1_rep	CDS	37825992	37826769	.	+	1	Parent=Os01t0872100-01
Chr01	irgsp1_rep	three_prime_UTR	37826770	37826818	.	+	.	Parent=Os01t0872100-01
Chr01	irgsp1_rep	mRNA	37821518	37826764	.	-	.	ID=Os01t0872201-00;Name=Os01t0872201-00;Locus_id=Os01g0872201;Note=Hypothetical protein.;Transcript_evidence=tplb0038k08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0872201-00
Chr01	irgsp1_rep	five_prime_UTR	37826764	37826764	.	-	.	Parent=Os01t0872201-00
Chr01	irgsp1_rep	CDS	37826458	37826763	.	-	0	Parent=Os01t0872201-00
Chr01	irgsp1_rep	three_prime_UTR	37825413	37826457	.	-	.	Parent=Os01t0872201-00
Chr01	irgsp1_rep	three_prime_UTR	37821518	37821736	.	-	.	Parent=Os01t0872201-00
Chr01	irgsp1_rep	mRNA	37828417	37829987	.	+	.	ID=Os01t0872300-00;Name=Os01t0872300-00;Locus_id=Os01g0872300;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Similar to POT family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001147599.1 (RefSeq);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);Oryzabase=23638;TENOR=Os01t0872300-00
Chr01	irgsp1_rep	CDS	37828417	37828519	.	+	0	Parent=Os01t0872300-00
Chr01	irgsp1_rep	CDS	37828596	37828813	.	+	2	Parent=Os01t0872300-00
Chr01	irgsp1_rep	CDS	37829454	37829987	.	+	0	Parent=Os01t0872300-00
Chr01	irgsp1_rep	mRNA	37829568	37832278	.	-	.	ID=Os01t0872350-00;Name=Os01t0872350-00;Locus_id=Os01g0872350;Note=Hypothetical protein.;Transcript_evidence=tplb0058e01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0872350-00
Chr01	irgsp1_rep	five_prime_UTR	37831796	37832278	.	-	.	Parent=Os01t0872350-00
Chr01	irgsp1_rep	CDS	37831724	37831795	.	-	0	Parent=Os01t0872350-00
Chr01	irgsp1_rep	CDS	37830424	37830750	.	-	0	Parent=Os01t0872350-00
Chr01	irgsp1_rep	CDS	37829776	37829865	.	-	0	Parent=Os01t0872350-00
Chr01	irgsp1_rep	three_prime_UTR	37829568	37829775	.	-	.	Parent=Os01t0872350-00
Chr01	irgsp1_rep	mRNA	37830130	37832381	.	+	.	ID=Os01t0872400-01;Name=Os01t0872400-01;Locus_id=Os01g0872400;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Similar to POT family protein.;Transcript_evidence=AK243378 (DDBJ%2C Best hit);ORF_evidence=NP_001147599.1 (RefSeq);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109);NIAS_FLcDNA=J100063A13;Oryzabase=23638;TENOR=Os01t0872400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	37830130	37831589	.	+	.	Parent=Os01t0872400-01
Chr01	irgsp1_rep	CDS	37831590	37832357	.	+	0	Parent=Os01t0872400-01
Chr01	irgsp1_rep	three_prime_UTR	37832358	37832381	.	+	.	Parent=Os01t0872400-01
Chr01	irgsp1_rep	mRNA	37832970	37833242	.	+	.	ID=Os01t0872450-00;Name=Os01t0872450-00;Locus_id=Os01g0872450;Note=Similar to POT family protein.;Transcript_evidence=EU973246 (DDBJ);ORF_evidence=NP_001147599.1 (RefSeq);TENOR=Os01t0872450-00
Chr01	irgsp1_rep	five_prime_UTR	37832970	37833065	.	+	.	Parent=Os01t0872450-00
Chr01	irgsp1_rep	CDS	37833066	37833242	.	+	0	Parent=Os01t0872450-00
Chr01	irgsp1_rep	mRNA	37834199	37836882	.	+	.	ID=Os01t0872500-01;Name=Os01t0872500-01;Locus_id=Os01g0872500;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Oligopeptide transporter domain containing protein.;Transcript_evidence=AK068086 (DDBJ%2C Best hit);ORF_evidence=Q8RU81 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J013134D13;Oryzabase=23639;TENOR=Os01t0872500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	37834199	37834235	.	+	.	Parent=Os01t0872500-01
Chr01	irgsp1_rep	CDS	37834236	37834350	.	+	0	Parent=Os01t0872500-01
Chr01	irgsp1_rep	CDS	37834501	37834718	.	+	2	Parent=Os01t0872500-01
Chr01	irgsp1_rep	CDS	37835165	37835655	.	+	0	Parent=Os01t0872500-01
Chr01	irgsp1_rep	CDS	37835738	37835940	.	+	1	Parent=Os01t0872500-01
Chr01	irgsp1_rep	CDS	37836041	37836099	.	+	2	Parent=Os01t0872500-01
Chr01	irgsp1_rep	three_prime_UTR	37836100	37836882	.	+	.	Parent=Os01t0872500-01
Chr01	irgsp1_rep	mRNA	37835234	37836889	.	+	.	ID=Os01t0872500-02;Name=Os01t0872500-02;Locus_id=Os01g0872500;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Similar to peptide transporter PTR2-B.;Transcript_evidence=AK066692 (DDBJ%2C Best hit);ORF_evidence=B6SWT0 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J013073M10;Oryzabase=23639;Expression=AK066692;TENOR=Os01t0872500-02;KEGG=Os01t0872500-02
Chr01	irgsp1_rep	five_prime_UTR	37835234	37835254	.	+	.	Parent=Os01t0872500-02
Chr01	irgsp1_rep	CDS	37835255	37835794	.	+	0	Parent=Os01t0872500-02
Chr01	irgsp1_rep	three_prime_UTR	37835795	37836889	.	+	.	Parent=Os01t0872500-02
Chr01	irgsp1_rep	mRNA	37834234	37836571	.	-	.	ID=Os01t0872533-00;Name=Os01t0872533-00;Locus_id=Os01g0872533;Note=Hypothetical protein.;Transcript_evidence=tplb0043c19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0872533-00
Chr01	irgsp1_rep	five_prime_UTR	37835701	37836571	.	-	.	Parent=Os01t0872533-00
Chr01	irgsp1_rep	five_prime_UTR	37835176	37835614	.	-	.	Parent=Os01t0872533-00
Chr01	irgsp1_rep	CDS	37835158	37835175	.	-	0	Parent=Os01t0872533-00
Chr01	irgsp1_rep	CDS	37834500	37834715	.	-	0	Parent=Os01t0872533-00
Chr01	irgsp1_rep	CDS	37834234	37834349	.	-	0	Parent=Os01t0872533-00
Chr01	irgsp1_rep	mRNA	37837235	37840175	.	-	.	ID=Os01t0872566-00;Name=Os01t0872566-00;Locus_id=Os01g0872566;Note=Hypothetical protein.;Transcript_evidence=tplb0043c19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0872566-00
Chr01	irgsp1_rep	five_prime_UTR	37840051	37840175	.	-	.	Parent=Os01t0872566-00
Chr01	irgsp1_rep	CDS	37839565	37840050	.	-	0	Parent=Os01t0872566-00
Chr01	irgsp1_rep	three_prime_UTR	37839346	37839564	.	-	.	Parent=Os01t0872566-00
Chr01	irgsp1_rep	three_prime_UTR	37838856	37839279	.	-	.	Parent=Os01t0872566-00
Chr01	irgsp1_rep	three_prime_UTR	37837473	37837722	.	-	.	Parent=Os01t0872566-00
Chr01	irgsp1_rep	three_prime_UTR	37837235	37837367	.	-	.	Parent=Os01t0872566-00
Chr01	irgsp1_rep	mRNA	37839529	37840372	.	+	.	ID=Os01t0872600-01;Name=Os01t0872600-01;Locus_id=Os01g0872600;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=TGF-beta receptor%2C type I/II extracellular region family protein.;Transcript_evidence=AK060248 (DDBJ%2C Best hit);ORF_evidence=NP_177359.1 (RefSeq);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109);NIAS_FLcDNA=001-004-A02;Oryzabase=23640;Expression=AK060248;TENOR=Os01t0872600-01;KEGG=Os01t0872600-01
Chr01	irgsp1_rep	CDS	37839529	37840161	.	+	0	Parent=Os01t0872600-01
Chr01	irgsp1_rep	three_prime_UTR	37840162	37840372	.	+	.	Parent=Os01t0872600-01
Chr01	irgsp1_rep	mRNA	37843352	37844058	.	-	.	ID=Os01t0872650-00;Name=Os01t0872650-00;Locus_id=Os01g0872650;Note=Non-protein coding transcript.;Transcript_evidence=CT835515 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os01t0872650-00
Chr01	irgsp1_rep	exon	37843821	37844058	.	-	.	Parent=Os01t0872650-00
Chr01	irgsp1_rep	exon	37843352	37843620	.	-	.	Parent=Os01t0872650-00
Chr01	irgsp1_rep	mRNA	37844994	37852790	.	-	.	ID=Os01t0872700-01;Name=Os01t0872700-01;Locus_id=Os01g0872700;RAP-DB Gene Symbol Synonym(s)=OsXrn3;RAP-DB Gene Name Synonym(s)=5'-3' exoribonuclease 3;CGSNL Gene Symbol=XRN3;CGSNL Gene Name=5'-3' EXORIBONUCLEASE 3;Oryzabase Gene Symbol Synonym(s)=OsXrn3%2C Xrn3;Oryzabase Gene Name Synonym(s)=5'-3' exoribonuclease 3;Note=5'-3' exoribonuclease;Transcript_evidence=AK100381;ORF_evidence=Q5N739;GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: exonuclease activity (GO:0004527),Molecular Function: 5'-3' exoribonuclease activity (GO:0004534),Molecular Function: zinc ion binding (GO:0008270),Cellular Component: nucleus (GO:0005634);InterPro=Zinc finger%2C CCHC-type superfamily (IPR036875),5'-3' exoribonuclease type 2 (IPR017151),Putative 5-3 exonuclease (IPR004859),Zinc finger%2C CCHC-type (IPR001878),Xrn1%2C helical domain (IPR041412);NIAS_FLcDNA=J023085E21;Manual Curation=July 15%2C 2020;Literature_PMID=28987346;Oryzabase=22102;Expression=AK100381;TENOR=Os01t0872700-01;KEGG=Os01t0872700-01 (EC:3.1.13.-)
Chr01	irgsp1_rep	five_prime_UTR	37852629	37852790	.	-	.	Parent=Os01t0872700-01
Chr01	irgsp1_rep	CDS	37852425	37852628	.	-	0	Parent=Os01t0872700-01
Chr01	irgsp1_rep	CDS	37851835	37851937	.	-	0	Parent=Os01t0872700-01
Chr01	irgsp1_rep	CDS	37851413	37851489	.	-	2	Parent=Os01t0872700-01
Chr01	irgsp1_rep	CDS	37851093	37851284	.	-	0	Parent=Os01t0872700-01
Chr01	irgsp1_rep	CDS	37850823	37850942	.	-	0	Parent=Os01t0872700-01
Chr01	irgsp1_rep	CDS	37850662	37850724	.	-	0	Parent=Os01t0872700-01
Chr01	irgsp1_rep	CDS	37850363	37850509	.	-	0	Parent=Os01t0872700-01
Chr01	irgsp1_rep	CDS	37850091	37850255	.	-	0	Parent=Os01t0872700-01
Chr01	irgsp1_rep	CDS	37849842	37849919	.	-	0	Parent=Os01t0872700-01
Chr01	irgsp1_rep	CDS	37849612	37849698	.	-	0	Parent=Os01t0872700-01
Chr01	irgsp1_rep	CDS	37848422	37848694	.	-	0	Parent=Os01t0872700-01
Chr01	irgsp1_rep	CDS	37848230	37848325	.	-	0	Parent=Os01t0872700-01
Chr01	irgsp1_rep	CDS	37847978	37848073	.	-	0	Parent=Os01t0872700-01
Chr01	irgsp1_rep	CDS	37847731	37847801	.	-	0	Parent=Os01t0872700-01
Chr01	irgsp1_rep	CDS	37847496	37847624	.	-	1	Parent=Os01t0872700-01
Chr01	irgsp1_rep	CDS	37847335	37847411	.	-	1	Parent=Os01t0872700-01
Chr01	irgsp1_rep	CDS	37847207	37847247	.	-	2	Parent=Os01t0872700-01
Chr01	irgsp1_rep	CDS	37847052	37847126	.	-	0	Parent=Os01t0872700-01
Chr01	irgsp1_rep	CDS	37846792	37846949	.	-	0	Parent=Os01t0872700-01
Chr01	irgsp1_rep	CDS	37846488	37846592	.	-	1	Parent=Os01t0872700-01
Chr01	irgsp1_rep	CDS	37846329	37846404	.	-	1	Parent=Os01t0872700-01
Chr01	irgsp1_rep	CDS	37846134	37846240	.	-	0	Parent=Os01t0872700-01
Chr01	irgsp1_rep	CDS	37845386	37846052	.	-	1	Parent=Os01t0872700-01
Chr01	irgsp1_rep	three_prime_UTR	37844994	37845385	.	-	.	Parent=Os01t0872700-01
Chr01	irgsp1_rep	mRNA	37845044	37852553	.	-	.	ID=Os01t0872700-02;Name=Os01t0872700-02;Locus_id=Os01g0872700;CGSNL Gene Symbol=XRN3;CGSNL Gene Name=5'-3' EXORIBONUCLEASE 3;Oryzabase Gene Symbol Synonym(s)=OsXrn3%2C Xrn3;Oryzabase Gene Name Synonym(s)=5'-3' exoribonuclease 3;Note=Similar to predicted protein.;Transcript_evidence=AK066633 (DDBJ%2C Best hit);ORF_evidence=NP_565114.1 (RefSeq);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Cellular Component: intracellular (GO:0005622),Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: exonuclease activity (GO:0004527),Molecular Function: 5'-3' exoribonuclease activity (GO:0004534),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Putative 5-3 exonuclease (IPR004859),Zinc finger%2C CCHC retroviral-type (IPR013084),5'-3' exoribonuclease 2 (IPR017151);NIAS_FLcDNA=J013072F17;Oryzabase=22102;Expression=AK066633;TENOR=Os01t0872700-02;KEGG=Os01t0872700-02 (EC:3.1.13.-)
Chr01	irgsp1_rep	CDS	37852425	37852553	.	-	0	Parent=Os01t0872700-02
Chr01	irgsp1_rep	CDS	37851835	37851937	.	-	0	Parent=Os01t0872700-02
Chr01	irgsp1_rep	CDS	37851413	37851489	.	-	2	Parent=Os01t0872700-02
Chr01	irgsp1_rep	CDS	37851093	37851284	.	-	0	Parent=Os01t0872700-02
Chr01	irgsp1_rep	CDS	37850823	37850942	.	-	0	Parent=Os01t0872700-02
Chr01	irgsp1_rep	CDS	37850662	37850724	.	-	0	Parent=Os01t0872700-02
Chr01	irgsp1_rep	CDS	37850363	37850509	.	-	0	Parent=Os01t0872700-02
Chr01	irgsp1_rep	CDS	37850091	37850255	.	-	0	Parent=Os01t0872700-02
Chr01	irgsp1_rep	CDS	37849842	37849919	.	-	0	Parent=Os01t0872700-02
Chr01	irgsp1_rep	CDS	37849612	37849698	.	-	0	Parent=Os01t0872700-02
Chr01	irgsp1_rep	CDS	37848422	37848694	.	-	0	Parent=Os01t0872700-02
Chr01	irgsp1_rep	CDS	37848230	37848325	.	-	0	Parent=Os01t0872700-02
Chr01	irgsp1_rep	CDS	37847978	37848073	.	-	0	Parent=Os01t0872700-02
Chr01	irgsp1_rep	CDS	37847731	37847801	.	-	0	Parent=Os01t0872700-02
Chr01	irgsp1_rep	CDS	37847496	37847624	.	-	1	Parent=Os01t0872700-02
Chr01	irgsp1_rep	CDS	37847335	37847411	.	-	1	Parent=Os01t0872700-02
Chr01	irgsp1_rep	CDS	37847207	37847247	.	-	2	Parent=Os01t0872700-02
Chr01	irgsp1_rep	CDS	37847052	37847126	.	-	0	Parent=Os01t0872700-02
Chr01	irgsp1_rep	CDS	37846792	37846949	.	-	0	Parent=Os01t0872700-02
Chr01	irgsp1_rep	CDS	37846488	37846592	.	-	1	Parent=Os01t0872700-02
Chr01	irgsp1_rep	CDS	37846329	37846404	.	-	1	Parent=Os01t0872700-02
Chr01	irgsp1_rep	CDS	37846134	37846240	.	-	0	Parent=Os01t0872700-02
Chr01	irgsp1_rep	CDS	37845386	37846052	.	-	1	Parent=Os01t0872700-02
Chr01	irgsp1_rep	three_prime_UTR	37845044	37845385	.	-	.	Parent=Os01t0872700-02
Chr01	irgsp1_rep	mRNA	37844995	37846520	.	-	.	ID=Os01t0872700-03;Name=Os01t0872700-03;Locus_id=Os01g0872700;CGSNL Gene Symbol=XRN3;CGSNL Gene Name=5'-3' EXORIBONUCLEASE 3;Oryzabase Gene Symbol Synonym(s)=OsXrn3%2C Xrn3;Oryzabase Gene Name Synonym(s)=5'-3' exoribonuclease 3;Note=Hypothetical conserved gene.;Transcript_evidence=AK072508 (DDBJ%2C Best hit);ORF_evidence=B9EUX3 (UniProt);NIAS_FLcDNA=J023128A15;Oryzabase=22102;Expression=AK072508;TENOR=Os01t0872700-03;KEGG=Os01t0872700-03 (EC:3.1.13.-)
Chr01	irgsp1_rep	five_prime_UTR	37846520	37846520	.	-	.	Parent=Os01t0872700-03
Chr01	irgsp1_rep	CDS	37846488	37846519	.	-	0	Parent=Os01t0872700-03
Chr01	irgsp1_rep	CDS	37846329	37846404	.	-	1	Parent=Os01t0872700-03
Chr01	irgsp1_rep	CDS	37846134	37846240	.	-	0	Parent=Os01t0872700-03
Chr01	irgsp1_rep	CDS	37845386	37846052	.	-	1	Parent=Os01t0872700-03
Chr01	irgsp1_rep	three_prime_UTR	37844995	37845385	.	-	.	Parent=Os01t0872700-03
Chr01	irgsp1_rep	mRNA	37853413	37857509	.	-	.	ID=Os01t0872800-01;Name=Os01t0872800-01;Locus_id=Os01g0872800;RAP-DB Gene Symbol Synonym(s)=OsPdk1;RAP-DB Gene Name Synonym(s)=3-phosphoinositide-dependent protein kinase 1;Oryzabase Gene Symbol Synonym(s)=PDK1%2C OsPdk1%2C Pdk1;Oryzabase Gene Name Synonym(s)=3-phosphoinositide-dependent protein kinase-1%2C 3-phosphoinositide-dependent protein kinase 1;Note=3-phosphoinositide-dependent protein kinase%2C Positive regulation of disease resistance;Transcript_evidence=AK073712;ORF_evidence=Q8RUE8;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),PH-like domain superfamily (IPR011993),Protein kinase domain (IPR000719),PDK1-type%2C PH domain (IPR033931),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J033061A22;Manual Curation=November 5%2C 2020;Literature_PMID=21051443;Oryzabase=14483;Expression=AK073712;TENOR=Os01t0872800-01;KEGG=Os01t0872800-01 (EC:2.7.11.1)
Chr01	irgsp1_rep	five_prime_UTR	37857107	37857509	.	-	.	Parent=Os01t0872800-01
Chr01	irgsp1_rep	CDS	37856915	37857106	.	-	0	Parent=Os01t0872800-01
Chr01	irgsp1_rep	CDS	37856629	37856809	.	-	0	Parent=Os01t0872800-01
Chr01	irgsp1_rep	CDS	37856450	37856502	.	-	2	Parent=Os01t0872800-01
Chr01	irgsp1_rep	CDS	37856263	37856364	.	-	0	Parent=Os01t0872800-01
Chr01	irgsp1_rep	CDS	37856073	37856178	.	-	0	Parent=Os01t0872800-01
Chr01	irgsp1_rep	CDS	37855911	37855989	.	-	2	Parent=Os01t0872800-01
Chr01	irgsp1_rep	CDS	37854966	37855131	.	-	1	Parent=Os01t0872800-01
Chr01	irgsp1_rep	CDS	37854532	37854666	.	-	0	Parent=Os01t0872800-01
Chr01	irgsp1_rep	CDS	37854288	37854454	.	-	0	Parent=Os01t0872800-01
Chr01	irgsp1_rep	CDS	37853917	37854139	.	-	1	Parent=Os01t0872800-01
Chr01	irgsp1_rep	CDS	37853748	37853840	.	-	0	Parent=Os01t0872800-01
Chr01	irgsp1_rep	three_prime_UTR	37853413	37853747	.	-	.	Parent=Os01t0872800-01
Chr01	irgsp1_rep	mRNA	37853470	37856811	.	-	.	ID=Os01t0872800-02;Name=Os01t0872800-02;Locus_id=Os01g0872800;Oryzabase Gene Symbol Synonym(s)=PDK1%2C OsPdk1%2C Pdk1;Oryzabase Gene Name Synonym(s)=3-phosphoinositide-dependent protein kinase-1%2C 3-phosphoinositide-dependent protein kinase 1;Note=Similar to 3-phosphoinositide dependent protein kinase 1.;Transcript_evidence=AK062100 (DDBJ%2C Best hit);ORF_evidence=Q0QVS5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Pleckstrin homology-type (IPR011993),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-045-A04;Oryzabase=14483;Expression=AK062100;TENOR=Os01t0872800-02;KEGG=Os01t0872800-02 (EC:2.7.11.1)
Chr01	irgsp1_rep	five_prime_UTR	37856810	37856811	.	-	.	Parent=Os01t0872800-02
Chr01	irgsp1_rep	CDS	37856629	37856809	.	-	0	Parent=Os01t0872800-02
Chr01	irgsp1_rep	CDS	37856450	37856502	.	-	2	Parent=Os01t0872800-02
Chr01	irgsp1_rep	CDS	37856263	37856364	.	-	0	Parent=Os01t0872800-02
Chr01	irgsp1_rep	CDS	37856073	37856178	.	-	0	Parent=Os01t0872800-02
Chr01	irgsp1_rep	CDS	37855911	37855989	.	-	2	Parent=Os01t0872800-02
Chr01	irgsp1_rep	CDS	37854966	37855131	.	-	1	Parent=Os01t0872800-02
Chr01	irgsp1_rep	CDS	37854532	37854666	.	-	0	Parent=Os01t0872800-02
Chr01	irgsp1_rep	CDS	37854288	37854454	.	-	0	Parent=Os01t0872800-02
Chr01	irgsp1_rep	CDS	37853917	37854139	.	-	1	Parent=Os01t0872800-02
Chr01	irgsp1_rep	CDS	37853748	37853840	.	-	0	Parent=Os01t0872800-02
Chr01	irgsp1_rep	three_prime_UTR	37853470	37853747	.	-	.	Parent=Os01t0872800-02
Chr01	irgsp1_rep	mRNA	37860133	37861943	.	-	.	ID=Os01t0872900-01;Name=Os01t0872900-01;Locus_id=Os01g0872900;Oryzabase Gene Name Synonym(s)=Glutathione S-transferase T3;Note=Protein of unknown function DUF635 family protein.;Transcript_evidence=AK106574 (DDBJ%2C Best hit);ORF_evidence=B7EBJ9 (UniProt);GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Putative harbinger transposase-derived nuclease (IPR006912);NIAS_FLcDNA=002-111-B06;Oryzabase=22569;Expression=AK106574;TENOR=Os01t0872900-01;KEGG=Os01t0872900-01
Chr01	irgsp1_rep	five_prime_UTR	37861835	37861943	.	-	.	Parent=Os01t0872900-01
Chr01	irgsp1_rep	CDS	37860758	37861834	.	-	0	Parent=Os01t0872900-01
Chr01	irgsp1_rep	three_prime_UTR	37860753	37860757	.	-	.	Parent=Os01t0872900-01
Chr01	irgsp1_rep	three_prime_UTR	37860631	37860669	.	-	.	Parent=Os01t0872900-01
Chr01	irgsp1_rep	three_prime_UTR	37860133	37860399	.	-	.	Parent=Os01t0872900-01
Chr01	irgsp1_rep	mRNA	37862635	37863183	.	-	.	ID=Os01t0873000-00;Name=Os01t0873000-00;Locus_id=Os01g0873000;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001044950.2 (RefSeq);TENOR=Os01t0873000-00;KEGG=Os01t0873000-00
Chr01	irgsp1_rep	CDS	37862635	37863183	.	-	0	Parent=Os01t0873000-00
Chr01	irgsp1_rep	mRNA	37866113	37866722	.	-	.	ID=Os01t0873100-01;Name=Os01t0873100-01;Locus_id=Os01g0873100;CGSNL Gene Symbol=ATASE1;CGSNL Gene Name=AMIDO PHOSPHORIBOSYLTRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=Atase1%2C OsATASE1;Oryzabase Gene Name Synonym(s)=APB transferase%2C amido phosphoribosyltransferase 1;Note=Similar to Amidophosphoribosyltransferase%2C chloroplast precursor (EC 2.4.2.14) (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPAT).;Transcript_evidence=AK070841 (DDBJ%2C Best hit);ORF_evidence=A3A032 (UniProt);GO=Biological Process: purine base biosynthetic process (GO:0009113),Molecular Function: amidophosphoribosyltransferase activity (GO:0004044);InterPro=Amidophosphoribosyl transferase (IPR005854);NIAS_FLcDNA=J023069O21;Oryzabase=18235;Expression=AK070841;TENOR=Os01t0873100-01;KEGG=Os01t0873100-01 (EC:2.4.2.14)
Chr01	irgsp1_rep	CDS	37866405	37866722	.	-	0	Parent=Os01t0873100-01
Chr01	irgsp1_rep	three_prime_UTR	37866113	37866404	.	-	.	Parent=Os01t0873100-01
Chr01	irgsp1_rep	mRNA	37866333	37868311	.	+	.	ID=Os01t0873200-01;Name=Os01t0873200-01;Locus_id=Os01g0873200;CGSNL Gene Symbol=ATASE2;CGSNL Gene Name=AMIDO PHOSPHORIBOSYLTRANSFERASE 2;Oryzabase Gene Symbol Synonym(s)=Atase2%2C OsATASE2;Oryzabase Gene Name Synonym(s)=amido phosphoribosyltransferase 2;Note=Similar to Amidophosphoribosyltransferase%2C chloroplast precursor (EC 2.4.2.14) (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPAT) (Fragment).;Transcript_evidence=AK109463 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-127-D05;Oryzabase=22922;Expression=AK109463;TENOR=Os01t0873200-01;KEGG=Os01t0873200-01 (EC:2.4.2.14)
Chr01	irgsp1_rep	five_prime_UTR	37866333	37867068	.	+	.	Parent=Os01t0873200-01
Chr01	irgsp1_rep	CDS	37867069	37867329	.	+	0	Parent=Os01t0873200-01
Chr01	irgsp1_rep	three_prime_UTR	37867330	37868311	.	+	.	Parent=Os01t0873200-01
Chr01	irgsp1_rep	mRNA	37869529	37870325	.	-	.	ID=Os01t0873300-00;Name=Os01t0873300-00;Locus_id=Os01g0873300;Note=Conserved hypothetical protein.;Transcript_evidence=EU962956 (DDBJ);ORF_evidence=Q8RUR3 (UniProt);TENOR=Os01t0873300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	37870086	37870325	.	-	0	Parent=Os01t0873300-00
Chr01	irgsp1_rep	three_prime_UTR	37869529	37870085	.	-	.	Parent=Os01t0873300-00
Chr01	irgsp1_rep	mRNA	37887626	37890353	.	+	.	ID=Os01t0873700-01;Name=Os01t0873700-01;Locus_id=Os01g0873700;Note=Protein of unknown function DUF803 family protein.;Transcript_evidence=AK103484 (DDBJ%2C Best hit);ORF_evidence=B6TRR3 (UniProt);InterPro=Protein of unknown function DUF803 (IPR008521);NIAS_FLcDNA=J033130L04;Expression=AK103484;TENOR=Os01t0873700-01;KEGG=Os01t0873700-01
Chr01	irgsp1_rep	five_prime_UTR	37887626	37887795	.	+	.	Parent=Os01t0873700-01
Chr01	irgsp1_rep	CDS	37887796	37887970	.	+	0	Parent=Os01t0873700-01
Chr01	irgsp1_rep	CDS	37888129	37888185	.	+	2	Parent=Os01t0873700-01
Chr01	irgsp1_rep	CDS	37888278	37888368	.	+	2	Parent=Os01t0873700-01
Chr01	irgsp1_rep	CDS	37888500	37888660	.	+	1	Parent=Os01t0873700-01
Chr01	irgsp1_rep	CDS	37888743	37888870	.	+	2	Parent=Os01t0873700-01
Chr01	irgsp1_rep	CDS	37888956	37889093	.	+	0	Parent=Os01t0873700-01
Chr01	irgsp1_rep	CDS	37889406	37889498	.	+	0	Parent=Os01t0873700-01
Chr01	irgsp1_rep	CDS	37889599	37889716	.	+	0	Parent=Os01t0873700-01
Chr01	irgsp1_rep	CDS	37889805	37889935	.	+	2	Parent=Os01t0873700-01
Chr01	irgsp1_rep	three_prime_UTR	37889936	37890353	.	+	.	Parent=Os01t0873700-01
Chr01	irgsp1_rep	mRNA	37890722	37897447	.	-	.	ID=Os01t0873800-01;Name=Os01t0873800-01;Locus_id=Os01g0873800;Note=Conserved hypothetical protein.;Transcript_evidence=AK068140 (DDBJ%2C Best hit);ORF_evidence=B8A705 (UniProt);NIAS_FLcDNA=J013134G03;Expression=AK068140;TENOR=Os01t0873800-01;KEGG=Os01t0873800-01
Chr01	irgsp1_rep	five_prime_UTR	37897361	37897447	.	-	.	Parent=Os01t0873800-01
Chr01	irgsp1_rep	CDS	37897218	37897360	.	-	0	Parent=Os01t0873800-01
Chr01	irgsp1_rep	CDS	37896365	37896477	.	-	1	Parent=Os01t0873800-01
Chr01	irgsp1_rep	CDS	37895622	37895829	.	-	2	Parent=Os01t0873800-01
Chr01	irgsp1_rep	CDS	37894989	37895544	.	-	1	Parent=Os01t0873800-01
Chr01	irgsp1_rep	CDS	37894663	37894914	.	-	0	Parent=Os01t0873800-01
Chr01	irgsp1_rep	CDS	37894284	37894475	.	-	0	Parent=Os01t0873800-01
Chr01	irgsp1_rep	CDS	37894138	37894212	.	-	0	Parent=Os01t0873800-01
Chr01	irgsp1_rep	CDS	37891707	37894046	.	-	0	Parent=Os01t0873800-01
Chr01	irgsp1_rep	CDS	37890939	37891226	.	-	0	Parent=Os01t0873800-01
Chr01	irgsp1_rep	three_prime_UTR	37890722	37890938	.	-	.	Parent=Os01t0873800-01
Chr01	irgsp1_rep	mRNA	37899282	37903267	.	-	.	ID=Os01t0873900-00;Name=Os01t0873900-00;Locus_id=Os01g0873900;CGSNL Gene Symbol=DUF668-2;CGSNL Gene Name=DUF668 FAMILY MEMBER 2;Oryzabase Gene Symbol Synonym(s)=OsDUF668-2;Oryzabase Gene Name Synonym(s)=DUF668 family member 2;Note=Similar to F23M19.3.;Transcript_evidence=EU957605 (DDBJ);ORF_evidence=Q9XID5 (UniProt);InterPro=Protein of unknown function DUF668 (IPR007700);Oryzabase=23478;TENOR=Os01t0873900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	37903061	37903267	.	-	.	Parent=Os01t0873900-00
Chr01	irgsp1_rep	five_prime_UTR	37902185	37902358	.	-	.	Parent=Os01t0873900-00
Chr01	irgsp1_rep	CDS	37902059	37902184	.	-	0	Parent=Os01t0873900-00
Chr01	irgsp1_rep	CDS	37901818	37901887	.	-	0	Parent=Os01t0873900-00
Chr01	irgsp1_rep	CDS	37900567	37900667	.	-	2	Parent=Os01t0873900-00
Chr01	irgsp1_rep	CDS	37900212	37900328	.	-	0	Parent=Os01t0873900-00
Chr01	irgsp1_rep	CDS	37900032	37900108	.	-	0	Parent=Os01t0873900-00
Chr01	irgsp1_rep	CDS	37899901	37899945	.	-	1	Parent=Os01t0873900-00
Chr01	irgsp1_rep	CDS	37899293	37899815	.	-	1	Parent=Os01t0873900-00
Chr01	irgsp1_rep	three_prime_UTR	37899282	37899292	.	-	.	Parent=Os01t0873900-00
Chr01	irgsp1_rep	mRNA	37914774	37918962	.	-	.	ID=Os01t0874100-01;Name=Os01t0874100-01;Locus_id=Os01g0874100;CGSNL Gene Symbol=DNK2;CGSNL Gene Name=DEOXYRIBONUCLEOSIDE KINASE 2;Oryzabase Gene Symbol Synonym(s)=OsdNK2%2C dNK2;Oryzabase Gene Name Synonym(s)=deoxyribonucleoside kinase 2;Note=Hypothetical conserved gene.;Transcript_evidence=AK105804 (DDBJ%2C Best hit);ORF_evidence=A2WXH5 (UniProt);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Deoxynucleoside kinase (IPR002624);NIAS_FLcDNA=001-203-B04;Oryzabase=23341;Expression=AK105804;TENOR=Os01t0874100-01;KEGG=Os01t0874100-01
Chr01	irgsp1_rep	five_prime_UTR	37918764	37918962	.	-	.	Parent=Os01t0874100-01
Chr01	irgsp1_rep	CDS	37918353	37918763	.	-	0	Parent=Os01t0874100-01
Chr01	irgsp1_rep	CDS	37917139	37917514	.	-	0	Parent=Os01t0874100-01
Chr01	irgsp1_rep	CDS	37916550	37916806	.	-	2	Parent=Os01t0874100-01
Chr01	irgsp1_rep	CDS	37916407	37916474	.	-	0	Parent=Os01t0874100-01
Chr01	irgsp1_rep	CDS	37915025	37915238	.	-	1	Parent=Os01t0874100-01
Chr01	irgsp1_rep	three_prime_UTR	37914774	37915024	.	-	.	Parent=Os01t0874100-01
Chr01	irgsp1_rep	mRNA	37914774	37918916	.	-	.	ID=Os01t0874100-02;Name=Os01t0874100-02;Locus_id=Os01g0874100;CGSNL Gene Symbol=DNK2;CGSNL Gene Name=DEOXYRIBONUCLEOSIDE KINASE 2;Oryzabase Gene Symbol Synonym(s)=OsdNK2%2C dNK2;Oryzabase Gene Name Synonym(s)=deoxyribonucleoside kinase 2;Note=Deoxynucleoside kinase family protein.;Transcript_evidence=AK101275 (DDBJ%2C Best hit);ORF_evidence=NP_001151951.1 (RefSeq);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Deoxynucleoside kinase (IPR002624);NIAS_FLcDNA=J033033B15;Oryzabase=23341;Expression=AK101275;TENOR=Os01t0874100-02;KEGG=Os01t0874100-02
Chr01	irgsp1_rep	five_prime_UTR	37918764	37918916	.	-	.	Parent=Os01t0874100-02
Chr01	irgsp1_rep	CDS	37918353	37918763	.	-	0	Parent=Os01t0874100-02
Chr01	irgsp1_rep	CDS	37917056	37917514	.	-	0	Parent=Os01t0874100-02
Chr01	irgsp1_rep	CDS	37916550	37916927	.	-	0	Parent=Os01t0874100-02
Chr01	irgsp1_rep	CDS	37916403	37916474	.	-	0	Parent=Os01t0874100-02
Chr01	irgsp1_rep	three_prime_UTR	37914774	37916402	.	-	.	Parent=Os01t0874100-02
Chr01	irgsp1_rep	mRNA	37914757	37918965	.	-	.	ID=Os01t0874100-03;Name=Os01t0874100-03;Locus_id=Os01g0874100;RAP-DB Gene Symbol Synonym(s)=OsdNK2;RAP-DB Gene Name Synonym(s)=deoxyribonucleoside kinase 2;CGSNL Gene Symbol=DNK2;CGSNL Gene Name=DEOXYRIBONUCLEOSIDE KINASE 2;Oryzabase Gene Symbol Synonym(s)=OsdNK2%2C dNK2;Oryzabase Gene Name Synonym(s)=deoxyribonucleoside kinase 2;Note=Deoxyribonucleoside kinase%2C WSL8 (white stripe leaf 8) homolog;Transcript_evidence=Inferred from literature;ORF_evidence=A3A039;InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),Deoxynucleoside kinase domain (IPR031314);Manual Curation=February 14%2C 2020;Literature_PMID=31485784;Oryzabase=23341
Chr01	irgsp1_rep	five_prime_UTR	37918764	37918965	.	-	.	Parent=Os01t0874100-03
Chr01	irgsp1_rep	CDS	37918353	37918763	.	-	0	Parent=Os01t0874100-03
Chr01	irgsp1_rep	CDS	37917056	37917514	.	-	0	Parent=Os01t0874100-03
Chr01	irgsp1_rep	CDS	37916550	37916927	.	-	0	Parent=Os01t0874100-03
Chr01	irgsp1_rep	CDS	37916407	37916474	.	-	0	Parent=Os01t0874100-03
Chr01	irgsp1_rep	CDS	37915025	37915238	.	-	1	Parent=Os01t0874100-03
Chr01	irgsp1_rep	three_prime_UTR	37914757	37915024	.	-	.	Parent=Os01t0874100-03
Chr01	irgsp1_rep	mRNA	37932258	37933372	.	+	.	ID=Os01t0874300-01;Name=Os01t0874300-01;Locus_id=Os01g0874300;CGSNL Gene Symbol=DLN31;CGSNL Gene Name=DLN REPRESSOR 31;Oryzabase Gene Symbol Synonym(s)=R2R3-MYB%2C OsDLN31;Oryzabase Gene Name Synonym(s)=DLN repressor 31%2C DLN motif protein 31;Note=Similar to MybHv5 (Fragment).;Transcript_evidence=AK060684 (DDBJ%2C Best hit);ORF_evidence=O23889 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=001-029-F12;Oryzabase=16290;TENOR=Os01t0874300-01;KEGG=Os01t0874300-01
Chr01	irgsp1_rep	five_prime_UTR	37932258	37932349	.	+	.	Parent=Os01t0874300-01
Chr01	irgsp1_rep	CDS	37932350	37932612	.	+	0	Parent=Os01t0874300-01
Chr01	irgsp1_rep	CDS	37932695	37933295	.	+	1	Parent=Os01t0874300-01
Chr01	irgsp1_rep	three_prime_UTR	37933296	37933372	.	+	.	Parent=Os01t0874300-01
Chr01	irgsp1_rep	mRNA	37948867	37951936	.	+	.	ID=Os01t0874700-01;Name=Os01t0874700-01;Locus_id=Os01g0874700;Note=GOLD domain containing protein.;Transcript_evidence=AK121856 (DDBJ%2C Best hit);ORF_evidence=B6TVE3 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: integral to membrane (GO:0016021);InterPro=Cellular retinaldehyde-binding/triple function%2C C-terminal (IPR001251),Cellular retinaldehyde-binding/triple function%2C N-terminal (IPR008273),GOLD (IPR009038),Phosphatidylinositol transfer protein-like%2C N-terminal (IPR011074);NIAS_FLcDNA=J033102G02;Expression=AK121856;TENOR=Os01t0874700-01;KEGG=Os01t0874700-01
Chr01	irgsp1_rep	five_prime_UTR	37948867	37949129	.	+	.	Parent=Os01t0874700-01
Chr01	irgsp1_rep	CDS	37949130	37950443	.	+	0	Parent=Os01t0874700-01
Chr01	irgsp1_rep	CDS	37950883	37951007	.	+	0	Parent=Os01t0874700-01
Chr01	irgsp1_rep	CDS	37951099	37951240	.	+	1	Parent=Os01t0874700-01
Chr01	irgsp1_rep	CDS	37951343	37951603	.	+	0	Parent=Os01t0874700-01
Chr01	irgsp1_rep	three_prime_UTR	37951604	37951936	.	+	.	Parent=Os01t0874700-01
Chr01	irgsp1_rep	mRNA	37948919	37951936	.	+	.	ID=Os01t0874700-02;Name=Os01t0874700-02;Locus_id=Os01g0874700;Note=GOLD domain containing protein.;Transcript_evidence=AK073077 (DDBJ%2C Best hit);ORF_evidence=B6TVE3 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: integral to membrane (GO:0016021);InterPro=Cellular retinaldehyde-binding/triple function%2C C-terminal (IPR001251),Cellular retinaldehyde-binding/triple function%2C N-terminal (IPR008273),GOLD (IPR009038),Phosphatidylinositol transfer protein-like%2C N-terminal (IPR011074);NIAS_FLcDNA=J033015J08;Expression=AK073077;TENOR=Os01t0874700-02;KEGG=Os01t0874700-02
Chr01	irgsp1_rep	five_prime_UTR	37948919	37949129	.	+	.	Parent=Os01t0874700-02
Chr01	irgsp1_rep	CDS	37949130	37950443	.	+	0	Parent=Os01t0874700-02
Chr01	irgsp1_rep	CDS	37950883	37951007	.	+	0	Parent=Os01t0874700-02
Chr01	irgsp1_rep	CDS	37951099	37951240	.	+	1	Parent=Os01t0874700-02
Chr01	irgsp1_rep	CDS	37951343	37951603	.	+	0	Parent=Os01t0874700-02
Chr01	irgsp1_rep	three_prime_UTR	37951604	37951936	.	+	.	Parent=Os01t0874700-02
Chr01	irgsp1_rep	mRNA	37948963	37951945	.	+	.	ID=Os01t0874700-03;Name=Os01t0874700-03;Locus_id=Os01g0874700;Note=Similar to patellin-1.;Transcript_evidence=AK105447 (DDBJ%2C Best hit);ORF_evidence=B6TVE3 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: integral to membrane (GO:0016021);InterPro=GOLD (IPR009038);NIAS_FLcDNA=001-125-B06;Expression=AK105447;TENOR=Os01t0874700-03;KEGG=Os01t0874700-03
Chr01	irgsp1_rep	five_prime_UTR	37948963	37949129	.	+	.	Parent=Os01t0874700-03
Chr01	irgsp1_rep	CDS	37949130	37949837	.	+	0	Parent=Os01t0874700-03
Chr01	irgsp1_rep	CDS	37951214	37951240	.	+	0	Parent=Os01t0874700-03
Chr01	irgsp1_rep	CDS	37951343	37951603	.	+	0	Parent=Os01t0874700-03
Chr01	irgsp1_rep	three_prime_UTR	37951604	37951945	.	+	.	Parent=Os01t0874700-03
Chr01	irgsp1_rep	mRNA	37957154	37959001	.	-	.	ID=Os01t0874800-01;Name=Os01t0874800-01;Locus_id=Os01g0874800;Note=Similar to DNA polymerase I.;Transcript_evidence=AK065916 (DDBJ%2C Best hit);ORF_evidence=B6U7X8 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: catalytic activity (GO:0003824),Molecular Function: 5'-3' exonuclease activity (GO:0008409);InterPro=5&apos%3B-3&apos%3B exonuclease%2C C-terminal domain (IPR020045),5&apos%3B-3&apos%3B exonuclease%2C alpha-helical arch%2C N-terminal (IPR020046);NIAS_FLcDNA=J013045N02;Expression=AK065916;TENOR=Os01t0874800-01;KEGG=Os01t0874800-01
Chr01	irgsp1_rep	five_prime_UTR	37958972	37959001	.	-	.	Parent=Os01t0874800-01
Chr01	irgsp1_rep	CDS	37958606	37958971	.	-	0	Parent=Os01t0874800-01
Chr01	irgsp1_rep	CDS	37958382	37958513	.	-	0	Parent=Os01t0874800-01
Chr01	irgsp1_rep	CDS	37958032	37958266	.	-	0	Parent=Os01t0874800-01
Chr01	irgsp1_rep	CDS	37957706	37957928	.	-	2	Parent=Os01t0874800-01
Chr01	irgsp1_rep	CDS	37957376	37957490	.	-	1	Parent=Os01t0874800-01
Chr01	irgsp1_rep	three_prime_UTR	37957154	37957375	.	-	.	Parent=Os01t0874800-01
Chr01	irgsp1_rep	mRNA	37955091	37958989	.	-	.	ID=Os01t0874800-02;Name=Os01t0874800-02;Locus_id=Os01g0874800;Note=Similar to DNA polymerase I.;Transcript_evidence=AK119315 (DDBJ%2C Best hit);ORF_evidence=B6U7X8 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: catalytic activity (GO:0003824),Molecular Function: 5'-3' exonuclease activity (GO:0008409);InterPro=5&apos%3B-3&apos%3B exonuclease%2C C-terminal domain (IPR020045),5&apos%3B-3&apos%3B exonuclease%2C alpha-helical arch%2C N-terminal (IPR020046);NIAS_FLcDNA=001-130-H04;Expression=AK119315;TENOR=Os01t0874800-02;KEGG=Os01t0874800-02
Chr01	irgsp1_rep	five_prime_UTR	37958972	37958989	.	-	.	Parent=Os01t0874800-02
Chr01	irgsp1_rep	CDS	37958606	37958971	.	-	0	Parent=Os01t0874800-02
Chr01	irgsp1_rep	CDS	37958382	37958513	.	-	0	Parent=Os01t0874800-02
Chr01	irgsp1_rep	CDS	37958032	37958266	.	-	0	Parent=Os01t0874800-02
Chr01	irgsp1_rep	CDS	37957642	37957928	.	-	2	Parent=Os01t0874800-02
Chr01	irgsp1_rep	three_prime_UTR	37955091	37957641	.	-	.	Parent=Os01t0874800-02
Chr01	irgsp1_rep	mRNA	37956379	37958988	.	-	.	ID=Os01t0874800-03;Name=Os01t0874800-03;Locus_id=Os01g0874800;Note=5'-3' exonuclease domain containing protein.;Transcript_evidence=AK105063 (DDBJ%2C Best hit);ORF_evidence=B6U7X8 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: catalytic activity (GO:0003824),Molecular Function: 5'-3' exonuclease activity (GO:0008409);InterPro=5&apos%3B-3&apos%3B exonuclease%2C C-terminal domain (IPR020045),5&apos%3B-3&apos%3B exonuclease%2C alpha-helical arch%2C N-terminal (IPR020046);NIAS_FLcDNA=001-044-D07;Expression=AK105063;TENOR=Os01t0874800-03;KEGG=Os01t0874800-03
Chr01	irgsp1_rep	five_prime_UTR	37958972	37958988	.	-	.	Parent=Os01t0874800-03
Chr01	irgsp1_rep	CDS	37958606	37958971	.	-	0	Parent=Os01t0874800-03
Chr01	irgsp1_rep	CDS	37958382	37958513	.	-	0	Parent=Os01t0874800-03
Chr01	irgsp1_rep	CDS	37958032	37958266	.	-	0	Parent=Os01t0874800-03
Chr01	irgsp1_rep	CDS	37957706	37957928	.	-	2	Parent=Os01t0874800-03
Chr01	irgsp1_rep	CDS	37957380	37957490	.	-	1	Parent=Os01t0874800-03
Chr01	irgsp1_rep	CDS	37957003	37957012	.	-	1	Parent=Os01t0874800-03
Chr01	irgsp1_rep	three_prime_UTR	37956379	37957002	.	-	.	Parent=Os01t0874800-03
Chr01	irgsp1_rep	mRNA	37955762	37958984	.	-	.	ID=Os01t0874800-04;Name=Os01t0874800-04;Locus_id=Os01g0874800;Note=Similar to DNA polymerase I.;Transcript_evidence=AK103577 (DDBJ%2C Best hit),AK065991 (DDBJ%2C Best hit);ORF_evidence=B6U7X8 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: catalytic activity (GO:0003824),Molecular Function: 5'-3' exonuclease activity (GO:0008409);InterPro=5&apos%3B-3&apos%3B exonuclease%2C C-terminal domain (IPR020045),5&apos%3B-3&apos%3B exonuclease%2C alpha-helical arch%2C N-terminal (IPR020046);NIAS_FLcDNA=J033132P11,J013046K16;Expression=AK103577;TENOR=Os01t0874800-04;KEGG=Os01t0874800-04
Chr01	irgsp1_rep	five_prime_UTR	37958972	37958984	.	-	.	Parent=Os01t0874800-04
Chr01	irgsp1_rep	CDS	37958606	37958971	.	-	0	Parent=Os01t0874800-04
Chr01	irgsp1_rep	CDS	37958382	37958513	.	-	0	Parent=Os01t0874800-04
Chr01	irgsp1_rep	CDS	37958032	37958266	.	-	0	Parent=Os01t0874800-04
Chr01	irgsp1_rep	CDS	37957642	37957928	.	-	2	Parent=Os01t0874800-04
Chr01	irgsp1_rep	three_prime_UTR	37957380	37957641	.	-	.	Parent=Os01t0874800-04
Chr01	irgsp1_rep	three_prime_UTR	37955762	37957012	.	-	.	Parent=Os01t0874800-04
Chr01	irgsp1_rep	mRNA	37962564	37966769	.	+	.	ID=Os01t0874900-01;Name=Os01t0874900-01;Locus_id=Os01g0874900;RAP-DB Gene Symbol Synonym(s)=OsCADT1;RAP-DB Gene Name Synonym(s)=cadmium tolerance 1;CGSNL Gene Symbol=CADT1;CGSNL Gene Name=CD TOLERANCE 1;Oryzabase Gene Symbol Synonym(s)=OsSHM4%2C SHM4%2C OsSHMT4%2C SHMT4%2C OsSHTM1%2C SHTM1%2C OsCADT1;Oryzabase Gene Name Synonym(s)=serine hydroxymethyltransferase 4%2C serine hydroxymethyltransferase-1%2C Cd tolerance 1;Note=Putative serine hydroxymethyltransferase%2C Negative regulator of sulphate/selenate uptake and assimilation%2C Cadmium tolerance;Transcript_evidence=AK103554;ORF_evidence=Q8RYY6;GO=Biological Process: glycine biosynthetic process from serine (GO:0019264),Biological Process: tetrahydrofolate interconversion (GO:0035999),Molecular Function: catalytic activity (GO:0003824),Molecular Function: glycine hydroxymethyltransferase activity (GO:0004372),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent transferase (IPR015424),Pyridoxal phosphate-dependent transferase domain 1 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015421),Serine hydroxymethyltransferase (IPR001085),Serine hydroxymethyltransferase-like domain (IPR039429),WD40 repeat%2C conserved site (IPR019775);NIAS_FLcDNA=J033132G05;Manual Curation=January 6%2C 2020;Literature_PMID=31879959;Oryzabase=19253;Expression=AK103554;TENOR=Os01t0874900-01;KEGG=Os01t0874900-01 (EC:2.1.2.1);Subcellular location=nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	37962564	37962871	.	+	.	Parent=Os01t0874900-01
Chr01	irgsp1_rep	CDS	37962872	37963945	.	+	0	Parent=Os01t0874900-01
Chr01	irgsp1_rep	CDS	37965301	37965703	.	+	0	Parent=Os01t0874900-01
Chr01	irgsp1_rep	CDS	37966111	37966212	.	+	2	Parent=Os01t0874900-01
Chr01	irgsp1_rep	CDS	37966310	37966533	.	+	2	Parent=Os01t0874900-01
Chr01	irgsp1_rep	three_prime_UTR	37966534	37966769	.	+	.	Parent=Os01t0874900-01
Chr01	irgsp1_rep	mRNA	37968972	37970334	.	-	.	ID=Os01t0875000-01;Name=Os01t0875000-01;Locus_id=Os01g0875000;Note=Conserved hypothetical protein.;Transcript_evidence=AK058560 (DDBJ%2C Best hit);ORF_evidence=A2WXI0 (UniProt);NIAS_FLcDNA=001-017-D09;Expression=AK058560;TENOR=Os01t0875000-01;KEGG=Os01t0875000-01
Chr01	irgsp1_rep	five_prime_UTR	37970284	37970334	.	-	.	Parent=Os01t0875000-01
Chr01	irgsp1_rep	CDS	37969957	37970283	.	-	0	Parent=Os01t0875000-01
Chr01	irgsp1_rep	CDS	37969172	37969801	.	-	0	Parent=Os01t0875000-01
Chr01	irgsp1_rep	three_prime_UTR	37968972	37969171	.	-	.	Parent=Os01t0875000-01
Chr01	irgsp1_rep	mRNA	37969176	37970284	.	+	.	ID=Os01t0875150-00;Name=Os01t0875150-00;Locus_id=Os01g0875150;Note=Hypothetical gene.;Transcript_evidence=EU946406 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0875150-00;KEGG=Os01t0875150-00
Chr01	irgsp1_rep	five_prime_UTR	37969176	37969177	.	+	.	Parent=Os01t0875150-00
Chr01	irgsp1_rep	CDS	37969178	37969816	.	+	0	Parent=Os01t0875150-00
Chr01	irgsp1_rep	CDS	37969956	37970063	.	+	0	Parent=Os01t0875150-00
Chr01	irgsp1_rep	three_prime_UTR	37970064	37970284	.	+	.	Parent=Os01t0875150-00
Chr01	irgsp1_rep	mRNA	37982651	37985429	.	+	.	ID=Os01t0875300-00;Name=Os01t0875300-00;Locus_id=Os01g0875300;Note=Similar to Universal stress protein family protein.;Transcript_evidence=EU968838 (DDBJ);ORF_evidence=B6TWU8 (UniProt);GO=Biological Process: response to stress (GO:0006950);InterPro=UspA (IPR006016),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);TENOR=Os01t0875300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	37982651	37983076	.	+	0	Parent=Os01t0875300-00
Chr01	irgsp1_rep	CDS	37983132	37983374	.	+	0	Parent=Os01t0875300-00
Chr01	irgsp1_rep	CDS	37984498	37984625	.	+	0	Parent=Os01t0875300-00
Chr01	irgsp1_rep	CDS	37985282	37985429	.	+	1	Parent=Os01t0875300-00
Chr01	irgsp1_rep	mRNA	37986867	37991746	.	-	.	ID=Os01t0875400-01;Name=Os01t0875400-01;Locus_id=Os01g0875400;Note=Ubiquitin domain containing protein.;Transcript_evidence=AK068371 (DDBJ%2C Best hit);ORF_evidence=B6TA38 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: phosphoprotein phosphatase activity (GO:0004721),Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin (IPR000626),NLI interacting factor (IPR004274),HAD-superfamily hydrolase%2C subfamily IIID (IPR011943),HAD-like domain (IPR023214);NIAS_FLcDNA=J013147C22;Expression=AK068371;TENOR=Os01t0875400-01;KEGG=Os01t0875400-01 (EC:3.1.3.16)
Chr01	irgsp1_rep	five_prime_UTR	37991723	37991746	.	-	.	Parent=Os01t0875400-01
Chr01	irgsp1_rep	CDS	37991412	37991722	.	-	0	Parent=Os01t0875400-01
Chr01	irgsp1_rep	CDS	37989003	37989147	.	-	1	Parent=Os01t0875400-01
Chr01	irgsp1_rep	CDS	37987821	37987935	.	-	0	Parent=Os01t0875400-01
Chr01	irgsp1_rep	CDS	37987679	37987742	.	-	2	Parent=Os01t0875400-01
Chr01	irgsp1_rep	CDS	37987412	37987586	.	-	1	Parent=Os01t0875400-01
Chr01	irgsp1_rep	CDS	37987086	37987328	.	-	0	Parent=Os01t0875400-01
Chr01	irgsp1_rep	three_prime_UTR	37986867	37987085	.	-	.	Parent=Os01t0875400-01
Chr01	irgsp1_rep	mRNA	37994513	38000988	.	+	.	ID=Os01t0875500-01;Name=Os01t0875500-01;Locus_id=Os01g0875500;CGSNL Gene Symbol=BGAL4;CGSNL Gene Name=BETA-GALACTOSIDASE 4;Oryzabase Gene Symbol Synonym(s)=OsBgal4%2C OsBGal4;Oryzabase Gene Name Synonym(s)=Beta-galactosidase 3%2C Lactase 3;Note=Similar to Beta-galactosidase (EC 3.2.1.23).;Transcript_evidence=AK102715 (DDBJ%2C Best hit);ORF_evidence=B6U0W2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: sugar binding (GO:0005529),Molecular Function: cation binding (GO:0043169);InterPro=D-galactoside/L-rhamnose binding SUEL lectin domain (IPR000922),Glycoside hydrolase%2C family 35 (IPR001944),Glycoside hydrolase%2C family 2%2C N-terminal (IPR006104),Galactose-binding domain-like (IPR008979),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J033105C09;Oryzabase=8292;Expression=AK102715;TENOR=Os01t0875500-01;KEGG=Os01t0875500-01 (EC:3.2.1.23)
Chr01	irgsp1_rep	five_prime_UTR	37994513	37994573	.	+	.	Parent=Os01t0875500-01
Chr01	irgsp1_rep	CDS	37994574	37994978	.	+	0	Parent=Os01t0875500-01
Chr01	irgsp1_rep	CDS	37995056	37995151	.	+	0	Parent=Os01t0875500-01
Chr01	irgsp1_rep	CDS	37995249	37995361	.	+	0	Parent=Os01t0875500-01
Chr01	irgsp1_rep	CDS	37995480	37995546	.	+	1	Parent=Os01t0875500-01
Chr01	irgsp1_rep	CDS	37995632	37995724	.	+	0	Parent=Os01t0875500-01
Chr01	irgsp1_rep	CDS	37995836	37995979	.	+	0	Parent=Os01t0875500-01
Chr01	irgsp1_rep	CDS	37996422	37996510	.	+	0	Parent=Os01t0875500-01
Chr01	irgsp1_rep	CDS	37996653	37996758	.	+	1	Parent=Os01t0875500-01
Chr01	irgsp1_rep	CDS	37996965	37997052	.	+	0	Parent=Os01t0875500-01
Chr01	irgsp1_rep	CDS	37997136	37997254	.	+	2	Parent=Os01t0875500-01
Chr01	irgsp1_rep	CDS	37997527	37997691	.	+	0	Parent=Os01t0875500-01
Chr01	irgsp1_rep	CDS	37997963	37998147	.	+	0	Parent=Os01t0875500-01
Chr01	irgsp1_rep	CDS	37998309	37998409	.	+	1	Parent=Os01t0875500-01
Chr01	irgsp1_rep	CDS	37998701	37998810	.	+	2	Parent=Os01t0875500-01
Chr01	irgsp1_rep	CDS	37999028	37999135	.	+	0	Parent=Os01t0875500-01
Chr01	irgsp1_rep	CDS	37999337	37999447	.	+	0	Parent=Os01t0875500-01
Chr01	irgsp1_rep	CDS	37999532	37999743	.	+	0	Parent=Os01t0875500-01
Chr01	irgsp1_rep	CDS	37999828	38000164	.	+	1	Parent=Os01t0875500-01
Chr01	irgsp1_rep	CDS	38000508	38000618	.	+	0	Parent=Os01t0875500-01
Chr01	irgsp1_rep	three_prime_UTR	38000619	38000988	.	+	.	Parent=Os01t0875500-01
Chr01	irgsp1_rep	mRNA	37994738	38001584	.	+	.	ID=Os01t0875500-02;Name=Os01t0875500-02;Locus_id=Os01g0875500;CGSNL Gene Symbol=BGAL4;CGSNL Gene Name=BETA-GALACTOSIDASE 4;Oryzabase Gene Symbol Synonym(s)=OsBgal4%2C OsBGal4;Oryzabase Gene Name Synonym(s)=Beta-galactosidase 3%2C Lactase 3;Note=Similar to cDNA clone:J033105C09%2C full insert sequence.;Transcript_evidence=AK101399 (DDBJ%2C Best hit);ORF_evidence=B7ETJ0 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: sugar binding (GO:0005529),Molecular Function: cation binding (GO:0043169);InterPro=D-galactoside/L-rhamnose binding SUEL lectin domain (IPR000922),Glycoside hydrolase%2C family 35 (IPR001944),Glycoside hydrolase%2C family 2%2C N-terminal (IPR006104),Galactose-binding domain-like (IPR008979),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J033037E13;Oryzabase=8292;TENOR=Os01t0875500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	37994738	37994738	.	+	.	Parent=Os01t0875500-02
Chr01	irgsp1_rep	CDS	37994739	37994978	.	+	0	Parent=Os01t0875500-02
Chr01	irgsp1_rep	CDS	37995056	37995151	.	+	0	Parent=Os01t0875500-02
Chr01	irgsp1_rep	CDS	37995249	37995361	.	+	0	Parent=Os01t0875500-02
Chr01	irgsp1_rep	CDS	37995480	37995546	.	+	1	Parent=Os01t0875500-02
Chr01	irgsp1_rep	CDS	37995632	37995724	.	+	0	Parent=Os01t0875500-02
Chr01	irgsp1_rep	CDS	37995836	37995979	.	+	0	Parent=Os01t0875500-02
Chr01	irgsp1_rep	CDS	37996422	37996510	.	+	0	Parent=Os01t0875500-02
Chr01	irgsp1_rep	CDS	37996653	37996758	.	+	1	Parent=Os01t0875500-02
Chr01	irgsp1_rep	CDS	37996965	37997052	.	+	0	Parent=Os01t0875500-02
Chr01	irgsp1_rep	CDS	37997136	37997254	.	+	2	Parent=Os01t0875500-02
Chr01	irgsp1_rep	CDS	37997527	37997691	.	+	0	Parent=Os01t0875500-02
Chr01	irgsp1_rep	CDS	37997963	37998147	.	+	0	Parent=Os01t0875500-02
Chr01	irgsp1_rep	CDS	37998309	37998409	.	+	1	Parent=Os01t0875500-02
Chr01	irgsp1_rep	CDS	37998701	37998810	.	+	2	Parent=Os01t0875500-02
Chr01	irgsp1_rep	CDS	37999028	37999135	.	+	0	Parent=Os01t0875500-02
Chr01	irgsp1_rep	CDS	37999337	37999447	.	+	0	Parent=Os01t0875500-02
Chr01	irgsp1_rep	CDS	37999532	37999743	.	+	0	Parent=Os01t0875500-02
Chr01	irgsp1_rep	CDS	37999828	38000164	.	+	1	Parent=Os01t0875500-02
Chr01	irgsp1_rep	CDS	38000508	38000618	.	+	0	Parent=Os01t0875500-02
Chr01	irgsp1_rep	three_prime_UTR	38000619	38000686	.	+	.	Parent=Os01t0875500-02
Chr01	irgsp1_rep	three_prime_UTR	38000810	38001584	.	+	.	Parent=Os01t0875500-02
Chr01	irgsp1_rep	mRNA	38009641	38011902	.	+	.	ID=Os01t0875700-01;Name=Os01t0875700-01;Locus_id=Os01g0875700;Oryzabase Gene Symbol Synonym(s)=OsDjB2;Oryzabase Gene Name Synonym(s)=DnaJ domain protein B2;Note=Heat shock protein DnaJ family protein.;Transcript_evidence=AK063817 (DDBJ%2C Best hit);ORF_evidence=NP_001148785.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Chaperone DnaJ%2C C-terminal (IPR002939),Heat shock protein DnaJ (IPR003095),HSP40/DnaJ peptide-binding (IPR008971);NIAS_FLcDNA=001-121-H08;Oryzabase=12151;Expression=AK063817;TENOR=Os01t0875700-01;KEGG=Os01t0875700-01
Chr01	irgsp1_rep	five_prime_UTR	38009641	38009811	.	+	.	Parent=Os01t0875700-01
Chr01	irgsp1_rep	CDS	38009812	38009988	.	+	0	Parent=Os01t0875700-01
Chr01	irgsp1_rep	CDS	38010079	38010431	.	+	0	Parent=Os01t0875700-01
Chr01	irgsp1_rep	CDS	38011275	38011728	.	+	1	Parent=Os01t0875700-01
Chr01	irgsp1_rep	three_prime_UTR	38011729	38011902	.	+	.	Parent=Os01t0875700-01
Chr01	irgsp1_rep	mRNA	38012799	38014299	.	-	.	ID=Os01t0875800-01;Name=Os01t0875800-01;Locus_id=Os01g0875800;Note=Protein of unknown function DUF266%2C plant family protein.;Transcript_evidence=AK105949 (DDBJ%2C Best hit);ORF_evidence=Q01HM5 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: acetylglucosaminyltransferase activity (GO:0008375);InterPro=Glycosyl transferase%2C family 14 (IPR003406);NIAS_FLcDNA=001-205-C09;Expression=AK105949;TENOR=Os01t0875800-01;KEGG=Os01t0875800-01
Chr01	irgsp1_rep	five_prime_UTR	38014174	38014299	.	-	.	Parent=Os01t0875800-01
Chr01	irgsp1_rep	CDS	38013661	38014173	.	-	0	Parent=Os01t0875800-01
Chr01	irgsp1_rep	CDS	38012915	38013556	.	-	0	Parent=Os01t0875800-01
Chr01	irgsp1_rep	three_prime_UTR	38012799	38012914	.	-	.	Parent=Os01t0875800-01
Chr01	irgsp1_rep	mRNA	38013613	38021799	.	+	.	ID=Os01t0876100-00;Name=Os01t0876100-00;Locus_id=Os01g0876100;CGSNL Gene Symbol=CBSCLC1;CGSNL Gene Name=CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsCBSCLC1;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSCLC1%2C CBS domain containing protein OsCBSCLC1%2C CBS domain containing protein 1;Note=Similar to Chloride channel.;Transcript_evidence=AK248202 (DDBJ);ORF_evidence=D6P3H6 (UniProt);GO=Biological Process: chloride transport (GO:0006821),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: ion channel activity (GO:0005216),Molecular Function: voltage-gated chloride channel activity (GO:0005247),Molecular Function: protein binding (GO:0005515);InterPro=Cystathionine beta-synthase%2C core (IPR000644),Chloride channel%2C voltage gated (IPR001807),Chloride channel ClC-plant (IPR002251),Chloride channel%2C core (IPR014743);Oryzabase=10330;TENOR=Os01t0876100-00;KEGG=Os01t0876100-00
Chr01	irgsp1_rep	CDS	38013613	38013988	.	+	0	Parent=Os01t0876100-00
Chr01	irgsp1_rep	CDS	38018271	38018376	.	+	2	Parent=Os01t0876100-00
Chr01	irgsp1_rep	CDS	38019107	38019307	.	+	1	Parent=Os01t0876100-00
Chr01	irgsp1_rep	CDS	38019400	38019577	.	+	1	Parent=Os01t0876100-00
Chr01	irgsp1_rep	CDS	38019687	38019949	.	+	0	Parent=Os01t0876100-00
Chr01	irgsp1_rep	CDS	38020121	38020390	.	+	1	Parent=Os01t0876100-00
Chr01	irgsp1_rep	CDS	38020494	38021631	.	+	1	Parent=Os01t0876100-00
Chr01	irgsp1_rep	CDS	38021713	38021799	.	+	0	Parent=Os01t0876100-00
Chr01	irgsp1_rep	mRNA	38018975	38021723	.	-	.	ID=Os01t0876200-01;Name=Os01t0876200-01;Locus_id=Os01g0876200;Note=Similar to Chloride channel protein CLC-c (AtCLC-c).;Transcript_evidence=AK119459 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-133-E07;Expression=AK119459;TENOR=Os01t0876200-01;KEGG=Os01t0876200-01
Chr01	irgsp1_rep	five_prime_UTR	38021607	38021723	.	-	.	Parent=Os01t0876200-01
Chr01	irgsp1_rep	CDS	38021130	38021606	.	-	0	Parent=Os01t0876200-01
Chr01	irgsp1_rep	three_prime_UTR	38018975	38021129	.	-	.	Parent=Os01t0876200-01
Chr01	irgsp1_rep	mRNA	38022820	38024140	.	-	.	ID=Os01t0876300-01;Name=Os01t0876300-01;Locus_id=Os01g0876300;Oryzabase Gene Symbol Synonym(s)=OsFbox051%2C OsFbox51%2C Os_F0330;Oryzabase Gene Name Synonym(s)=F-box protein 51;Note=F-box associated type 1 domain containing protein.;Transcript_evidence=AK069276 (DDBJ%2C Best hit);ORF_evidence=NP_001150772.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Quinoprotein amine dehydrogenase%2C beta chain-like (IPR011044),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023015I05;Oryzabase=16849;Expression=AK069276;TENOR=Os01t0876300-01;KEGG=Os01t0876300-01
Chr01	irgsp1_rep	five_prime_UTR	38024038	38024140	.	-	.	Parent=Os01t0876300-01
Chr01	irgsp1_rep	CDS	38022949	38024037	.	-	0	Parent=Os01t0876300-01
Chr01	irgsp1_rep	three_prime_UTR	38022820	38022948	.	-	.	Parent=Os01t0876300-01
Chr01	irgsp1_rep	mRNA	38022813	38024054	.	-	.	ID=Os01t0876300-02;Name=Os01t0876300-02;Locus_id=Os01g0876300;Oryzabase Gene Symbol Synonym(s)=OsFbox051%2C OsFbox51%2C Os_F0330;Oryzabase Gene Name Synonym(s)=F-box protein 51;Note=Similar to F-box protein interaction domain containing protein.;Transcript_evidence=AK061090 (DDBJ%2C Best hit);ORF_evidence=NP_001150772.1 (RefSeq);InterPro=Quinoprotein amine dehydrogenase%2C beta chain-like (IPR011044);NIAS_FLcDNA=006-206-H03;Oryzabase=16849;TENOR=Os01t0876300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	38023992	38024054	.	-	.	Parent=Os01t0876300-02
Chr01	irgsp1_rep	CDS	38023871	38023991	.	-	0	Parent=Os01t0876300-02
Chr01	irgsp1_rep	CDS	38022949	38023826	.	-	2	Parent=Os01t0876300-02
Chr01	irgsp1_rep	three_prime_UTR	38022813	38022948	.	-	.	Parent=Os01t0876300-02
Chr01	irgsp1_rep	mRNA	38027321	38030181	.	-	.	ID=Os01t0876400-01;Name=Os01t0876400-01;Locus_id=Os01g0876400;CGSNL Gene Symbol=SUN3;CGSNL Gene Name=SUN DOMAIN-CONTAINING PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsSUN3%2C OsSUN3.1%2C OsSUN3.2%2C OsSUN3.3%2C OsSUN3.4;Oryzabase Gene Name Synonym(s)=SUN (Sad1/UNC-84) domain-containing protein 3%2C SUN domain-containing protein 3%2C SUN protein 3;Note=Sad1/UNC-like%2C C-terminal domain containing protein.;Transcript_evidence=AK065101 (DDBJ%2C Best hit);ORF_evidence=NP_001183941.1 (RefSeq);InterPro=Galactose-binding domain-like (IPR008979),Sad1/UNC-like%2C C-terminal (IPR012919);NIAS_FLcDNA=J013001N02;Oryzabase=22681;Expression=AK065101;TENOR=Os01t0876400-01;KEGG=Os01t0876400-01
Chr01	irgsp1_rep	five_prime_UTR	38029907	38030181	.	-	.	Parent=Os01t0876400-01
Chr01	irgsp1_rep	CDS	38029837	38029906	.	-	0	Parent=Os01t0876400-01
Chr01	irgsp1_rep	CDS	38029721	38029810	.	-	2	Parent=Os01t0876400-01
Chr01	irgsp1_rep	CDS	38028038	38029383	.	-	2	Parent=Os01t0876400-01
Chr01	irgsp1_rep	CDS	38027867	38027952	.	-	0	Parent=Os01t0876400-01
Chr01	irgsp1_rep	CDS	38027377	38027608	.	-	1	Parent=Os01t0876400-01
Chr01	irgsp1_rep	three_prime_UTR	38027321	38027376	.	-	.	Parent=Os01t0876400-01
Chr01	irgsp1_rep	mRNA	38027299	38030181	.	-	.	ID=Os01t0876400-02;Name=Os01t0876400-02;Locus_id=Os01g0876400;CGSNL Gene Symbol=SUN3;CGSNL Gene Name=SUN DOMAIN-CONTAINING PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsSUN3%2C OsSUN3.1%2C OsSUN3.2%2C OsSUN3.3%2C OsSUN3.4;Oryzabase Gene Name Synonym(s)=SUN (Sad1/UNC-84) domain-containing protein 3%2C SUN domain-containing protein 3%2C SUN protein 3;Note=Hypothetical conserved gene.;Transcript_evidence=AK121648 (DDBJ%2C Best hit),AK073144 (DDBJ%2C Best hit);ORF_evidence=NP_001183941.1 (RefSeq);InterPro=Galactose-binding domain-like (IPR008979),Sad1/UNC-like%2C C-terminal (IPR012919);NIAS_FLcDNA=J033060D18,J033020E06;Oryzabase=22681;TENOR=Os01t0876400-02
Chr01	irgsp1_rep	five_prime_UTR	38029935	38030181	.	-	.	Parent=Os01t0876400-02
Chr01	irgsp1_rep	CDS	38029721	38029934	.	-	0	Parent=Os01t0876400-02
Chr01	irgsp1_rep	CDS	38028038	38029383	.	-	2	Parent=Os01t0876400-02
Chr01	irgsp1_rep	CDS	38027867	38027952	.	-	0	Parent=Os01t0876400-02
Chr01	irgsp1_rep	CDS	38027377	38027608	.	-	1	Parent=Os01t0876400-02
Chr01	irgsp1_rep	three_prime_UTR	38027299	38027376	.	-	.	Parent=Os01t0876400-02
Chr01	irgsp1_rep	mRNA	38026660	38030139	.	-	.	ID=Os01t0876400-03;Name=Os01t0876400-03;Locus_id=Os01g0876400;CGSNL Gene Symbol=SUN3;CGSNL Gene Name=SUN DOMAIN-CONTAINING PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsSUN3%2C OsSUN3.1%2C OsSUN3.2%2C OsSUN3.3%2C OsSUN3.4;Oryzabase Gene Name Synonym(s)=SUN (Sad1/UNC-84) domain-containing protein 3%2C SUN domain-containing protein 3%2C SUN protein 3;Note=Hypothetical conserved gene.;Transcript_evidence=AK072910 (DDBJ%2C Best hit);ORF_evidence=NP_001183941.1 (RefSeq);InterPro=Galactose-binding domain-like (IPR008979),Sad1/UNC-like%2C C-terminal (IPR012919);NIAS_FLcDNA=J023148N24;Oryzabase=22681;Expression=AK072910;TENOR=Os01t0876400-03;KEGG=Os01t0876400-03
Chr01	irgsp1_rep	five_prime_UTR	38029935	38030139	.	-	.	Parent=Os01t0876400-03
Chr01	irgsp1_rep	CDS	38029721	38029934	.	-	0	Parent=Os01t0876400-03
Chr01	irgsp1_rep	CDS	38028038	38029383	.	-	2	Parent=Os01t0876400-03
Chr01	irgsp1_rep	CDS	38027867	38027952	.	-	0	Parent=Os01t0876400-03
Chr01	irgsp1_rep	CDS	38027377	38027608	.	-	1	Parent=Os01t0876400-03
Chr01	irgsp1_rep	three_prime_UTR	38026660	38027376	.	-	.	Parent=Os01t0876400-03
Chr01	irgsp1_rep	mRNA	38026774	38029256	.	-	.	ID=Os01t0876400-04;Name=Os01t0876400-04;Locus_id=Os01g0876400;CGSNL Gene Symbol=SUN3;CGSNL Gene Name=SUN DOMAIN-CONTAINING PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsSUN3%2C OsSUN3.1%2C OsSUN3.2%2C OsSUN3.3%2C OsSUN3.4;Oryzabase Gene Name Synonym(s)=SUN (Sad1/UNC-84) domain-containing protein 3%2C SUN domain-containing protein 3%2C SUN protein 3;Note=Hypothetical conserved gene.;Transcript_evidence=AK100486 (DDBJ%2C Best hit);ORF_evidence=NP_001183941.1 (RefSeq);InterPro=Galactose-binding domain-like (IPR008979),Sad1/UNC-like%2C C-terminal (IPR012919);NIAS_FLcDNA=J023097N16;Oryzabase=22681;Expression=AK100486;TENOR=Os01t0876400-04;KEGG=Os01t0876400-04
Chr01	irgsp1_rep	five_prime_UTR	38029256	38029256	.	-	.	Parent=Os01t0876400-04
Chr01	irgsp1_rep	CDS	38028038	38029255	.	-	0	Parent=Os01t0876400-04
Chr01	irgsp1_rep	CDS	38027867	38027952	.	-	0	Parent=Os01t0876400-04
Chr01	irgsp1_rep	CDS	38027377	38027608	.	-	1	Parent=Os01t0876400-04
Chr01	irgsp1_rep	three_prime_UTR	38026774	38027376	.	-	.	Parent=Os01t0876400-04
Chr01	irgsp1_rep	mRNA	38031463	38033471	.	+	.	ID=Os01t0876500-01;Name=Os01t0876500-01;Locus_id=Os01g0876500;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK240782 (DDBJ%2C Best hit);ORF_evidence=Q5N8W6 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J053076M17;TENOR=Os01t0876500-01;KEGG=Os01t0876500-01
Chr01	irgsp1_rep	five_prime_UTR	38031463	38031497	.	+	.	Parent=Os01t0876500-01
Chr01	irgsp1_rep	CDS	38031498	38031531	.	+	0	Parent=Os01t0876500-01
Chr01	irgsp1_rep	CDS	38032333	38032544	.	+	2	Parent=Os01t0876500-01
Chr01	irgsp1_rep	CDS	38032852	38032893	.	+	0	Parent=Os01t0876500-01
Chr01	irgsp1_rep	CDS	38032979	38032993	.	+	0	Parent=Os01t0876500-01
Chr01	irgsp1_rep	three_prime_UTR	38032994	38033053	.	+	.	Parent=Os01t0876500-01
Chr01	irgsp1_rep	three_prime_UTR	38033146	38033471	.	+	.	Parent=Os01t0876500-01
Chr01	irgsp1_rep	mRNA	38031467	38035706	.	+	.	ID=Os01t0876500-02;Name=Os01t0876500-02;Locus_id=Os01g0876500;Note=Conserved hypothetical protein.;Transcript_evidence=AK287838 (DDBJ%2C Best hit);ORF_evidence=A3A054 (UniProt);NIAS_FLcDNA=J065192B17;TENOR=Os01t0876500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	38031467	38031531	.	+	.	Parent=Os01t0876500-02
Chr01	irgsp1_rep	five_prime_UTR	38032333	38032544	.	+	.	Parent=Os01t0876500-02
Chr01	irgsp1_rep	five_prime_UTR	38032852	38032893	.	+	.	Parent=Os01t0876500-02
Chr01	irgsp1_rep	five_prime_UTR	38032979	38033053	.	+	.	Parent=Os01t0876500-02
Chr01	irgsp1_rep	five_prime_UTR	38033146	38033239	.	+	.	Parent=Os01t0876500-02
Chr01	irgsp1_rep	CDS	38033240	38033332	.	+	0	Parent=Os01t0876500-02
Chr01	irgsp1_rep	CDS	38033511	38033618	.	+	0	Parent=Os01t0876500-02
Chr01	irgsp1_rep	CDS	38034707	38034763	.	+	0	Parent=Os01t0876500-02
Chr01	irgsp1_rep	three_prime_UTR	38034764	38035706	.	+	.	Parent=Os01t0876500-02
Chr01	irgsp1_rep	mRNA	38037620	38038360	.	-	.	ID=Os01t0876650-00;Name=Os01t0876650-00;Locus_id=Os01g0876650;Note=Hypothetical conserved gene.;Transcript_evidence=CT834967 (DDBJ%2C Best hit);ORF_evidence=Q654G2 (UniProt);TENOR=Os01t0876650-00;KEGG=Os01t0876650-00
Chr01	irgsp1_rep	five_prime_UTR	38038120	38038360	.	-	.	Parent=Os01t0876650-00
Chr01	irgsp1_rep	five_prime_UTR	38037785	38038023	.	-	.	Parent=Os01t0876650-00
Chr01	irgsp1_rep	CDS	38037635	38037784	.	-	0	Parent=Os01t0876650-00
Chr01	irgsp1_rep	three_prime_UTR	38037620	38037634	.	-	.	Parent=Os01t0876650-00
Chr01	irgsp1_rep	mRNA	38048047	38054353	.	+	.	ID=Os01t0876800-00;Name=Os01t0876800-00;Locus_id=Os01g0876800;Note=RNA-binding region RNP-1  (RNA recognition motif) domain containing protein.;Transcript_evidence=CT834820 (DDBJ%2C Best hit);ORF_evidence=XP_002891043.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);TENOR=Os01t0876800-00;KEGG=Os01t0876800-00
Chr01	irgsp1_rep	five_prime_UTR	38048047	38048239	.	+	.	Parent=Os01t0876800-00
Chr01	irgsp1_rep	CDS	38048240	38048422	.	+	0	Parent=Os01t0876800-00
Chr01	irgsp1_rep	CDS	38048594	38048726	.	+	0	Parent=Os01t0876800-00
Chr01	irgsp1_rep	CDS	38049557	38049695	.	+	2	Parent=Os01t0876800-00
Chr01	irgsp1_rep	CDS	38050072	38050108	.	+	1	Parent=Os01t0876800-00
Chr01	irgsp1_rep	CDS	38052347	38052638	.	+	0	Parent=Os01t0876800-00
Chr01	irgsp1_rep	CDS	38053125	38053243	.	+	2	Parent=Os01t0876800-00
Chr01	irgsp1_rep	three_prime_UTR	38053244	38054353	.	+	.	Parent=Os01t0876800-00
Chr01	irgsp1_rep	mRNA	38060086	38062775	.	-	.	ID=Os01t0877001-01;Name=Os01t0877001-01;Locus_id=Os01g0877001;Note=Conserved hypothetical protein.;Transcript_evidence=AK242868 (DDBJ%2C Best hit);ORF_evidence=NP_001172672.1 (RefSeq);NIAS_FLcDNA=J090076F12;TENOR=Os01t0877001-01;KEGG=Os01t0877001-01
Chr01	irgsp1_rep	five_prime_UTR	38060881	38062775	.	-	.	Parent=Os01t0877001-01
Chr01	irgsp1_rep	CDS	38060599	38060880	.	-	0	Parent=Os01t0877001-01
Chr01	irgsp1_rep	three_prime_UTR	38060086	38060598	.	-	.	Parent=Os01t0877001-01
Chr01	irgsp1_rep	mRNA	38064447	38071692	.	+	.	ID=Os01t0877300-01;Name=Os01t0877300-01;Locus_id=Os01g0877300;Note=Mitotic checkpoint family protein.;Transcript_evidence=AK073302 (DDBJ%2C Best hit);ORF_evidence=B6U4F6 (UniProt);InterPro=Mitotic checkpoint (IPR008672);NIAS_FLcDNA=J033028G02;Expression=AK073302;TENOR=Os01t0877300-01;KEGG=Os01t0877300-01
Chr01	irgsp1_rep	five_prime_UTR	38064447	38064542	.	+	.	Parent=Os01t0877300-01
Chr01	irgsp1_rep	CDS	38064543	38064740	.	+	0	Parent=Os01t0877300-01
Chr01	irgsp1_rep	CDS	38065079	38065178	.	+	0	Parent=Os01t0877300-01
Chr01	irgsp1_rep	CDS	38065471	38065631	.	+	2	Parent=Os01t0877300-01
Chr01	irgsp1_rep	CDS	38065907	38066104	.	+	0	Parent=Os01t0877300-01
Chr01	irgsp1_rep	CDS	38066183	38066275	.	+	0	Parent=Os01t0877300-01
Chr01	irgsp1_rep	CDS	38066473	38066595	.	+	0	Parent=Os01t0877300-01
Chr01	irgsp1_rep	CDS	38067378	38067625	.	+	0	Parent=Os01t0877300-01
Chr01	irgsp1_rep	CDS	38067745	38067916	.	+	1	Parent=Os01t0877300-01
Chr01	irgsp1_rep	CDS	38068148	38068234	.	+	0	Parent=Os01t0877300-01
Chr01	irgsp1_rep	CDS	38068324	38068527	.	+	0	Parent=Os01t0877300-01
Chr01	irgsp1_rep	CDS	38069156	38069318	.	+	0	Parent=Os01t0877300-01
Chr01	irgsp1_rep	CDS	38069580	38069667	.	+	2	Parent=Os01t0877300-01
Chr01	irgsp1_rep	CDS	38069751	38069820	.	+	1	Parent=Os01t0877300-01
Chr01	irgsp1_rep	CDS	38070307	38070435	.	+	0	Parent=Os01t0877300-01
Chr01	irgsp1_rep	CDS	38070514	38070552	.	+	0	Parent=Os01t0877300-01
Chr01	irgsp1_rep	CDS	38071063	38071152	.	+	0	Parent=Os01t0877300-01
Chr01	irgsp1_rep	three_prime_UTR	38071153	38071692	.	+	.	Parent=Os01t0877300-01
Chr01	irgsp1_rep	mRNA	38072090	38074854	.	+	.	ID=Os01t0877400-01;Name=Os01t0877400-01;Locus_id=Os01g0877400;Note=Similar to Avr9 elicitor response-like protein.;Transcript_evidence=AK106754 (DDBJ%2C Best hit);ORF_evidence=B6TIX7 (UniProt);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Glycosyl transferase%2C family 31 (IPR002659);NIAS_FLcDNA=002-115-D04;Expression=AK106754;TENOR=Os01t0877400-01;KEGG=Os01t0877400-01
Chr01	irgsp1_rep	five_prime_UTR	38072090	38072176	.	+	.	Parent=Os01t0877400-01
Chr01	irgsp1_rep	CDS	38072177	38072182	.	+	0	Parent=Os01t0877400-01
Chr01	irgsp1_rep	CDS	38072280	38072501	.	+	0	Parent=Os01t0877400-01
Chr01	irgsp1_rep	CDS	38072676	38072740	.	+	0	Parent=Os01t0877400-01
Chr01	irgsp1_rep	CDS	38072836	38073029	.	+	1	Parent=Os01t0877400-01
Chr01	irgsp1_rep	CDS	38073280	38073546	.	+	2	Parent=Os01t0877400-01
Chr01	irgsp1_rep	CDS	38073649	38073736	.	+	2	Parent=Os01t0877400-01
Chr01	irgsp1_rep	CDS	38073832	38073957	.	+	1	Parent=Os01t0877400-01
Chr01	irgsp1_rep	CDS	38074032	38074141	.	+	1	Parent=Os01t0877400-01
Chr01	irgsp1_rep	CDS	38074264	38074412	.	+	2	Parent=Os01t0877400-01
Chr01	irgsp1_rep	three_prime_UTR	38074413	38074854	.	+	.	Parent=Os01t0877400-01
Chr01	irgsp1_rep	mRNA	38081254	38082203	.	-	.	ID=Os01t0877450-00;Name=Os01t0877450-00;Locus_id=Os01g0877450;Note=Hypothetical conserved gene.;Transcript_evidence=EU971726 (DDBJ);ORF_evidence=NP_001144921.1 (RefSeq);TENOR=Os01t0877450-00;KEGG=Os01t0877450-00
Chr01	irgsp1_rep	CDS	38081553	38082203	.	-	0	Parent=Os01t0877450-00
Chr01	irgsp1_rep	three_prime_UTR	38081254	38081552	.	-	.	Parent=Os01t0877450-00
Chr01	irgsp1_rep	mRNA	38081675	38084956	.	+	.	ID=Os01t0877500-01;Name=Os01t0877500-01;Locus_id=Os01g0877500;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK101067 (DDBJ%2C Best hit);ORF_evidence=A2WXJ6 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-type%2C conserved site (IPR019786),Zinc finger%2C PHD-finger (IPR019787);NIAS_FLcDNA=J033023G11;Expression=AK101067;TENOR=Os01t0877500-01;KEGG=Os01t0877500-01
Chr01	irgsp1_rep	five_prime_UTR	38081675	38081763	.	+	.	Parent=Os01t0877500-01
Chr01	irgsp1_rep	CDS	38081764	38082100	.	+	0	Parent=Os01t0877500-01
Chr01	irgsp1_rep	CDS	38082575	38082704	.	+	2	Parent=Os01t0877500-01
Chr01	irgsp1_rep	CDS	38082945	38083160	.	+	1	Parent=Os01t0877500-01
Chr01	irgsp1_rep	CDS	38083261	38083878	.	+	1	Parent=Os01t0877500-01
Chr01	irgsp1_rep	CDS	38083967	38084816	.	+	1	Parent=Os01t0877500-01
Chr01	irgsp1_rep	three_prime_UTR	38084817	38084956	.	+	.	Parent=Os01t0877500-01
Chr01	irgsp1_rep	mRNA	38083446	38084945	.	+	.	ID=Os01t0877500-02;Name=Os01t0877500-02;Locus_id=Os01g0877500;Note=Hypothetical conserved gene.;Transcript_evidence=AK058582 (DDBJ%2C Best hit),AK064177 (DDBJ%2C Best hit);ORF_evidence=A2WXJ6 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-type%2C conserved site (IPR019786),Zinc finger%2C PHD-finger (IPR019787);NIAS_FLcDNA=001-017-F10,002-104-A12;TENOR=Os01t0877500-02
Chr01	irgsp1_rep	five_prime_UTR	38083446	38083447	.	+	.	Parent=Os01t0877500-02
Chr01	irgsp1_rep	CDS	38083448	38083878	.	+	0	Parent=Os01t0877500-02
Chr01	irgsp1_rep	CDS	38083967	38084816	.	+	1	Parent=Os01t0877500-02
Chr01	irgsp1_rep	three_prime_UTR	38084817	38084945	.	+	.	Parent=Os01t0877500-02
Chr01	irgsp1_rep	mRNA	38082295	38088758	.	-	.	ID=Os01t0877600-01;Name=Os01t0877600-01;Locus_id=Os01g0877600;Note=Hypothetical protein.;Transcript_evidence=AK069864 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023037P13;Expression=AK069864;TENOR=Os01t0877600-01;KEGG=Os01t0877600-01
Chr01	irgsp1_rep	five_prime_UTR	38088434	38088758	.	-	.	Parent=Os01t0877600-01
Chr01	irgsp1_rep	five_prime_UTR	38087239	38087311	.	-	.	Parent=Os01t0877600-01
Chr01	irgsp1_rep	five_prime_UTR	38085393	38085543	.	-	.	Parent=Os01t0877600-01
Chr01	irgsp1_rep	five_prime_UTR	38084825	38085258	.	-	.	Parent=Os01t0877600-01
Chr01	irgsp1_rep	CDS	38084363	38084824	.	-	0	Parent=Os01t0877600-01
Chr01	irgsp1_rep	three_prime_UTR	38082295	38084362	.	-	.	Parent=Os01t0877600-01
Chr01	irgsp1_rep	mRNA	38082432	38085061	.	-	.	ID=Os01t0877600-02;Name=Os01t0877600-02;Locus_id=Os01g0877600;Note=Non-protein coding transcript.;Transcript_evidence=AK061259 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=006-212-B11;TENOR=Os01t0877600-02
Chr01	irgsp1_rep	exon	38084869	38085061	.	-	.	Parent=Os01t0877600-02
Chr01	irgsp1_rep	exon	38082432	38083561	.	-	.	Parent=Os01t0877600-02
Chr01	irgsp1_rep	mRNA	38098937	38099628	.	-	.	ID=Os01t0877900-01;Name=Os01t0877900-01;Locus_id=Os01g0877900;Note=Conserved hypothetical protein.;Transcript_evidence=AK111134 (DDBJ%2C Best hit);ORF_evidence=A2WXJ7 (UniProt);NIAS_FLcDNA=002-176-D06;Expression=AK111134;TENOR=Os01t0877900-01;KEGG=Os01t0877900-01
Chr01	irgsp1_rep	five_prime_UTR	38099483	38099628	.	-	.	Parent=Os01t0877900-01
Chr01	irgsp1_rep	CDS	38099048	38099482	.	-	0	Parent=Os01t0877900-01
Chr01	irgsp1_rep	three_prime_UTR	38098937	38099047	.	-	.	Parent=Os01t0877900-01
Chr01	irgsp1_rep	mRNA	38101567	38102991	.	-	.	ID=Os01t0878000-01;Name=Os01t0878000-01;Locus_id=Os01g0878000;Note=Conserved hypothetical protein.;Transcript_evidence=AK104289 (DDBJ%2C Best hit),AK060162 (DDBJ%2C Best hit);ORF_evidence=A3A062 (UniProt);NIAS_FLcDNA=001-007-E07,006-311-A12;TENOR=Os01t0878000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	38102798	38102991	.	-	.	Parent=Os01t0878000-01
Chr01	irgsp1_rep	CDS	38102701	38102797	.	-	0	Parent=Os01t0878000-01
Chr01	irgsp1_rep	CDS	38101971	38102338	.	-	2	Parent=Os01t0878000-01
Chr01	irgsp1_rep	CDS	38101723	38101890	.	-	0	Parent=Os01t0878000-01
Chr01	irgsp1_rep	three_prime_UTR	38101567	38101722	.	-	.	Parent=Os01t0878000-01
Chr01	irgsp1_rep	mRNA	38101549	38102991	.	-	.	ID=Os01t0878000-02;Name=Os01t0878000-02;Locus_id=Os01g0878000;Note=Hypothetical conserved gene.;Transcript_evidence=AK061119 (DDBJ%2C Best hit);ORF_evidence=A3A062 (UniProt);NIAS_FLcDNA=006-207-F10;Expression=AK061119;TENOR=Os01t0878000-02;KEGG=Os01t0878000-02
Chr01	irgsp1_rep	five_prime_UTR	38102798	38102991	.	-	.	Parent=Os01t0878000-02
Chr01	irgsp1_rep	CDS	38102701	38102797	.	-	0	Parent=Os01t0878000-02
Chr01	irgsp1_rep	CDS	38101902	38102338	.	-	2	Parent=Os01t0878000-02
Chr01	irgsp1_rep	three_prime_UTR	38101549	38101901	.	-	.	Parent=Os01t0878000-02
Chr01	irgsp1_rep	mRNA	38106515	38107556	.	-	.	ID=Os01t0878101-01;Name=Os01t0878101-01;Locus_id=Os01g0878101;Note=Conserved hypothetical protein.;Transcript_evidence=AK241694 (DDBJ%2C Best hit);ORF_evidence=Q5Z572 (UniProt);NIAS_FLcDNA=J065195M10;TENOR=Os01t0878101-01
Chr01	irgsp1_rep	five_prime_UTR	38107070	38107556	.	-	.	Parent=Os01t0878101-01
Chr01	irgsp1_rep	CDS	38106911	38107069	.	-	0	Parent=Os01t0878101-01
Chr01	irgsp1_rep	three_prime_UTR	38106515	38106910	.	-	.	Parent=Os01t0878101-01
Chr01	irgsp1_rep	mRNA	38106751	38107815	.	+	.	ID=Os01t0878200-01;Name=Os01t0878200-01;Locus_id=Os01g0878200;Note=Conserved hypothetical protein.;Transcript_evidence=AK240772 (DDBJ%2C Best hit);ORF_evidence=NP_001172673.1 (RefSeq);NIAS_FLcDNA=J053064N09;TENOR=Os01t0878200-01
Chr01	irgsp1_rep	five_prime_UTR	38106751	38107184	.	+	.	Parent=Os01t0878200-01
Chr01	irgsp1_rep	CDS	38107185	38107565	.	+	0	Parent=Os01t0878200-01
Chr01	irgsp1_rep	three_prime_UTR	38107566	38107815	.	+	.	Parent=Os01t0878200-01
Chr01	irgsp1_rep	mRNA	38112112	38117971	.	+	.	ID=Os01t0878300-01;Name=Os01t0878300-01;Locus_id=Os01g0878300;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK069324 (DDBJ%2C Best hit);ORF_evidence=C6ZRU4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023012G17;Expression=AK069324;TENOR=Os01t0878300-01;KEGG=Os01t0878300-01
Chr01	irgsp1_rep	five_prime_UTR	38112112	38112188	.	+	.	Parent=Os01t0878300-01
Chr01	irgsp1_rep	five_prime_UTR	38113821	38113848	.	+	.	Parent=Os01t0878300-01
Chr01	irgsp1_rep	CDS	38113849	38116390	.	+	0	Parent=Os01t0878300-01
Chr01	irgsp1_rep	CDS	38117304	38117656	.	+	2	Parent=Os01t0878300-01
Chr01	irgsp1_rep	three_prime_UTR	38117657	38117971	.	+	.	Parent=Os01t0878300-01
Chr01	irgsp1_rep	mRNA	38114866	38116960	.	+	.	ID=Os01t0878300-02;Name=Os01t0878300-02;Locus_id=Os01g0878300;Note=Hypothetical conserved gene.;Transcript_evidence=AK106635 (DDBJ%2C Best hit);ORF_evidence=A2WXJ9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=002-113-D08;Expression=AK106635;TENOR=Os01t0878300-02;KEGG=Os01t0878300-02 (EC:2.7.11.1)
Chr01	irgsp1_rep	CDS	38114866	38116390	.	+	0	Parent=Os01t0878300-02
Chr01	irgsp1_rep	CDS	38116502	38116536	.	+	2	Parent=Os01t0878300-02
Chr01	irgsp1_rep	three_prime_UTR	38116537	38116960	.	+	.	Parent=Os01t0878300-02
Chr01	irgsp1_rep	mRNA	38118010	38120760	.	-	.	ID=Os01t0878400-01;Name=Os01t0878400-01;Locus_id=Os01g0878400;RAP-DB Gene Symbol Synonym(s)=OsAAP5;RAP-DB Gene Name Synonym(s)=amino acid permease 5;CGSNL Gene Symbol=AAP10C;CGSNL Gene Name=AMINO ACID PERMEASE 10C;Oryzabase Gene Symbol Synonym(s)=OsAAP10C%2C OsAAP5%2C AAP5;Oryzabase Gene Name Synonym(s)=amino acid permease 10C%2C amino acid permease 5%2C amino acid/auxin permease 5;Note=Amino acid permease%2C Regulation of tiller number and grain yield;Transcript_evidence=AK073884;ORF_evidence=Q8L4X7;InterPro=Amino acid transporter%2C transmembrane domain (IPR013057);NIAS_FLcDNA=J033073B17;Manual Curation=March 22%2C 2019;Literature_PMID=30890663;Oryzabase=18490;Expression=AK073884;TENOR=Os01t0878400-01;KEGG=Os01t0878400-01;Subcellular location=plasma membrane (GO:0005886)
Chr01	irgsp1_rep	five_prime_UTR	38120687	38120760	.	-	.	Parent=Os01t0878400-01
Chr01	irgsp1_rep	CDS	38120632	38120686	.	-	0	Parent=Os01t0878400-01
Chr01	irgsp1_rep	CDS	38119877	38120110	.	-	2	Parent=Os01t0878400-01
Chr01	irgsp1_rep	CDS	38119706	38119799	.	-	2	Parent=Os01t0878400-01
Chr01	irgsp1_rep	CDS	38119235	38119595	.	-	1	Parent=Os01t0878400-01
Chr01	irgsp1_rep	CDS	38118828	38119052	.	-	0	Parent=Os01t0878400-01
Chr01	irgsp1_rep	CDS	38118298	38118726	.	-	0	Parent=Os01t0878400-01
Chr01	irgsp1_rep	three_prime_UTR	38118010	38118297	.	-	.	Parent=Os01t0878400-01
Chr01	irgsp1_rep	mRNA	38118315	38120111	.	+	.	ID=Os01t0878550-00;Name=Os01t0878550-00;Locus_id=Os01g0878550;Note=Hypothetical protein.;Transcript_evidence=tplb0036o08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0878550-00
Chr01	irgsp1_rep	five_prime_UTR	38118315	38118724	.	+	.	Parent=Os01t0878550-00
Chr01	irgsp1_rep	five_prime_UTR	38118825	38119017	.	+	.	Parent=Os01t0878550-00
Chr01	irgsp1_rep	five_prime_UTR	38119187	38119424	.	+	.	Parent=Os01t0878550-00
Chr01	irgsp1_rep	CDS	38119425	38119561	.	+	0	Parent=Os01t0878550-00
Chr01	irgsp1_rep	CDS	38119680	38119800	.	+	1	Parent=Os01t0878550-00
Chr01	irgsp1_rep	CDS	38119875	38119886	.	+	0	Parent=Os01t0878550-00
Chr01	irgsp1_rep	three_prime_UTR	38119887	38120111	.	+	.	Parent=Os01t0878550-00
Chr01	irgsp1_rep	mRNA	38133475	38137770	.	-	.	ID=Os01t0878700-02;Name=Os01t0878700-02;Locus_id=Os01g0878700;RAP-DB Gene Symbol Synonym(s)=OsAAP6%2C qPC1;RAP-DB Gene Name Synonym(s)=amino acid permease 6;CGSNL Gene Symbol=AAP10D;CGSNL Gene Name=AMINO ACID PERMEASE 10D;Oryzabase Gene Symbol Synonym(s)=OsAAP10D%2C OsAAP6%2C AAP6%2C qPC1;Oryzabase Gene Name Synonym(s)=amino acid permease 10D%2C amino acid permease 6%2C amino acid/auxin permease 6%2C quantitative trait locus (QTL) for GPC (grain protein content) on Chromosome 1;Note=Amino acid transporter%2C Regulation of grain protein content and nutritional quality;Transcript_evidence=AK121636,AK065286;ORF_evidence=A0A088MWT3;InterPro=Amino acid transporter%2C transmembrane domain (IPR013057);NIAS_FLcDNA=J033051N12,J013002M14;Manual Curation=August 7%2C 2019;Literature_PMID=25209128;Oryzabase=18485;Expression=AK121636;TENOR=Os01t0878700-02;KEGG=Os01t0878700-02;Subcellular location=endoplasmic reticulum (GO:0005783)
Chr01	irgsp1_rep	five_prime_UTR	38137698	38137770	.	-	.	Parent=Os01t0878700-02
Chr01	irgsp1_rep	CDS	38137634	38137697	.	-	0	Parent=Os01t0878700-02
Chr01	irgsp1_rep	CDS	38135043	38135276	.	-	2	Parent=Os01t0878700-02
Chr01	irgsp1_rep	CDS	38134857	38134950	.	-	2	Parent=Os01t0878700-02
Chr01	irgsp1_rep	CDS	38133755	38134763	.	-	1	Parent=Os01t0878700-02
Chr01	irgsp1_rep	three_prime_UTR	38133475	38133754	.	-	.	Parent=Os01t0878700-02
Chr01	irgsp1_rep	mRNA	38133571	38137710	.	-	.	ID=Os01t0878700-03;Name=Os01t0878700-03;Locus_id=Os01g0878700;CGSNL Gene Symbol=AAP10D;CGSNL Gene Name=AMINO ACID PERMEASE 10D;Oryzabase Gene Symbol Synonym(s)=OsAAP10D%2C OsAAP6%2C AAP6%2C qPC1;Oryzabase Gene Name Synonym(s)=amino acid permease 10D%2C amino acid permease 6%2C amino acid/auxin permease 6%2C quantitative trait locus (QTL) for GPC (grain protein content) on Chromosome 1;Note=Amino acid transporter%2C transmembrane domain containing protein.;Transcript_evidence=AK119529 (DDBJ%2C Best hit);ORF_evidence=XP_002327371.1 (RefSeq);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=001-203-C05;Oryzabase=18485;Expression=AK119529;TENOR=Os01t0878700-03;KEGG=Os01t0878700-03
Chr01	irgsp1_rep	five_prime_UTR	38137698	38137710	.	-	.	Parent=Os01t0878700-03
Chr01	irgsp1_rep	CDS	38137634	38137697	.	-	0	Parent=Os01t0878700-03
Chr01	irgsp1_rep	CDS	38135043	38135276	.	-	2	Parent=Os01t0878700-03
Chr01	irgsp1_rep	CDS	38134857	38134950	.	-	2	Parent=Os01t0878700-03
Chr01	irgsp1_rep	CDS	38133755	38134763	.	-	1	Parent=Os01t0878700-03
Chr01	irgsp1_rep	three_prime_UTR	38133571	38133754	.	-	.	Parent=Os01t0878700-03
Chr01	irgsp1_rep	mRNA	38133803	38135277	.	+	.	ID=Os01t0878750-00;Name=Os01t0878750-00;Locus_id=Os01g0878750;Note=Hypothetical protein.;Transcript_evidence=tplb0036o08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0878750-00
Chr01	irgsp1_rep	CDS	38133803	38134762	.	+	0	Parent=Os01t0878750-00
Chr01	irgsp1_rep	three_prime_UTR	38134763	38134794	.	+	.	Parent=Os01t0878750-00
Chr01	irgsp1_rep	three_prime_UTR	38134977	38135277	.	+	.	Parent=Os01t0878750-00
Chr01	irgsp1_rep	mRNA	38139223	38142619	.	-	.	ID=Os01t0878800-01;Name=Os01t0878800-01;Locus_id=Os01g0878800;Oryzabase Gene Name Synonym(s)=DOPA dioxygenase;Note=Similar to 4%2C5-DOPA dioxygenase extradiol.;Transcript_evidence=AK070251 (DDBJ%2C Best hit);ORF_evidence=B4FQS1 (UniProt);GO=Biological Process: cellular aromatic compound metabolic process (GO:0006725),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: ferrous iron binding (GO:0008198),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on single donors with incorporation of molecular oxygen (GO:0016701);InterPro=Extradiol ring-cleavage dioxygenase%2C class III enzyme%2C subunit B (IPR004183),Extradiol aromatic ring-opening dioxygenase%2C DODA type (IPR014436);NIAS_FLcDNA=J023041E09;Oryzabase=18236;TENOR=Os01t0878800-01
Chr01	irgsp1_rep	five_prime_UTR	38142594	38142619	.	-	.	Parent=Os01t0878800-01
Chr01	irgsp1_rep	CDS	38142192	38142593	.	-	0	Parent=Os01t0878800-01
Chr01	irgsp1_rep	CDS	38139472	38140038	.	-	0	Parent=Os01t0878800-01
Chr01	irgsp1_rep	three_prime_UTR	38139223	38139471	.	-	.	Parent=Os01t0878800-01
Chr01	irgsp1_rep	mRNA	38139227	38142580	.	-	.	ID=Os01t0878800-02;Name=Os01t0878800-02;Locus_id=Os01g0878800;Oryzabase Gene Name Synonym(s)=DOPA dioxygenase;Note=Similar to 4%2C5-DOPA dioxygenase extradiol.;Transcript_evidence=AK070438 (DDBJ%2C Best hit),AK104297 (DDBJ%2C Best hit),AK105779 (DDBJ%2C Best hit);ORF_evidence=B4FQS1 (UniProt);NIAS_FLcDNA=J023053F07,001-008-H10,001-202-G02;Oryzabase=18236;Expression=AK104297;TENOR=Os01t0878800-02;KEGG=Os01t0878800-02;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	38142426	38142580	.	-	.	Parent=Os01t0878800-02
Chr01	irgsp1_rep	CDS	38142192	38142425	.	-	0	Parent=Os01t0878800-02
Chr01	irgsp1_rep	CDS	38139472	38140038	.	-	0	Parent=Os01t0878800-02
Chr01	irgsp1_rep	three_prime_UTR	38139227	38139471	.	-	.	Parent=Os01t0878800-02
Chr01	irgsp1_rep	mRNA	38144793	38146141	.	-	.	ID=Os01t0878900-01;Name=Os01t0878900-01;Locus_id=Os01g0878900;Note=Similar to 4%2C5-DOPA dioxygenase extradiol-like protein.;Transcript_evidence=AK104601 (DDBJ%2C Best hit),AK060927 (DDBJ%2C Best hit),AK104432 (DDBJ%2C Best hit),AK104462 (DDBJ%2C Best hit),AK104545 (DDBJ%2C Best hit),AK104652 (DDBJ%2C Best hit);ORF_evidence=B4FQS1 (UniProt);GO=Biological Process: cellular aromatic compound metabolic process (GO:0006725),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: ferrous iron binding (GO:0008198),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on single donors with incorporation of molecular oxygen (GO:0016701);InterPro=Extradiol ring-cleavage dioxygenase%2C class III enzyme%2C subunit B (IPR004183),Extradiol aromatic ring-opening dioxygenase%2C DODA type (IPR014436);NIAS_FLcDNA=006-308-G05,006-201-A03,006-208-A08,006-301-C01,006-305-C02,006-311-C01;TENOR=Os01t0878900-01
Chr01	irgsp1_rep	five_prime_UTR	38145981	38146141	.	-	.	Parent=Os01t0878900-01
Chr01	irgsp1_rep	CDS	38145741	38145980	.	-	0	Parent=Os01t0878900-01
Chr01	irgsp1_rep	CDS	38144994	38145596	.	-	0	Parent=Os01t0878900-01
Chr01	irgsp1_rep	three_prime_UTR	38144793	38144993	.	-	.	Parent=Os01t0878900-01
Chr01	irgsp1_rep	mRNA	38147023	38147798	.	-	.	ID=Os01t0879000-01;Name=Os01t0879000-01;Locus_id=Os01g0879000;Note=Hypothetical protein.;Transcript_evidence=AK066116 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013056I11;TENOR=Os01t0879000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	38147798	38147798	.	-	.	Parent=Os01t0879000-01
Chr01	irgsp1_rep	CDS	38147183	38147797	.	-	0	Parent=Os01t0879000-01
Chr01	irgsp1_rep	three_prime_UTR	38147023	38147182	.	-	.	Parent=Os01t0879000-01
Chr01	irgsp1_rep	mRNA	38147082	38148018	.	+	.	ID=Os01t0879100-01;Name=Os01t0879100-01;Locus_id=Os01g0879100;Note=Hypothetical protein.;Transcript_evidence=AK108415 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-142-H06;TENOR=Os01t0879100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	38147082	38147083	.	+	.	Parent=Os01t0879100-01
Chr01	irgsp1_rep	CDS	38147084	38147755	.	+	0	Parent=Os01t0879100-01
Chr01	irgsp1_rep	three_prime_UTR	38147756	38148018	.	+	.	Parent=Os01t0879100-01
Chr01	irgsp1_rep	mRNA	38148684	38149534	.	+	.	ID=Os01t0879200-01;Name=Os01t0879200-01;Locus_id=Os01g0879200;Oryzabase Gene Symbol Synonym(s)=DRR206;Oryzabase Gene Name Synonym(s)=Disease-resistance response gene/DRR206;Note=Plant disease resistance response protein domain containing protein.;Transcript_evidence=AK109033 (DDBJ%2C Best hit);ORF_evidence=A2WXK4 (UniProt);InterPro=Plant disease resistance response protein (IPR004265);NIAS_FLcDNA=002-154-C05;Oryzabase=19085;Expression=AK109033;TENOR=Os01t0879200-01;KEGG=Os01t0879200-01
Chr01	irgsp1_rep	five_prime_UTR	38148684	38148735	.	+	.	Parent=Os01t0879200-01
Chr01	irgsp1_rep	CDS	38148736	38149323	.	+	0	Parent=Os01t0879200-01
Chr01	irgsp1_rep	three_prime_UTR	38149324	38149534	.	+	.	Parent=Os01t0879200-01
Chr01	irgsp1_rep	mRNA	38151365	38152044	.	+	.	ID=Os01t0879300-00;Name=Os01t0879300-00;Locus_id=Os01g0879300;Note=Hypothetical conserved gene.;Transcript_evidence=EU966752 (DDBJ);ORF_evidence=Q8L532 (UniProt);InterPro=Plant disease resistance response protein (IPR004265);TENOR=Os01t0879300-00;KEGG=Os01t0879300-00
Chr01	irgsp1_rep	CDS	38151365	38152042	.	+	0	Parent=Os01t0879300-00
Chr01	irgsp1_rep	three_prime_UTR	38152043	38152044	.	+	.	Parent=Os01t0879300-00
Chr01	irgsp1_rep	mRNA	38154147	38156987	.	+	.	ID=Os01t0879400-01;Name=Os01t0879400-01;Locus_id=Os01g0879400;Note=Glycoside hydrolase%2C family 43 protein.;Transcript_evidence=AK065053 (DDBJ%2C Best hit);ORF_evidence=NP_001151925.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 43 (IPR006710),Glycosyl hydrolase family 43%2C five-bladed beta-propellor domain (IPR023296);NIAS_FLcDNA=J013001I24;Expression=AK065053;TENOR=Os01t0879400-01;KEGG=Os01t0879400-01
Chr01	irgsp1_rep	five_prime_UTR	38154147	38154326	.	+	.	Parent=Os01t0879400-01
Chr01	irgsp1_rep	five_prime_UTR	38155154	38155160	.	+	.	Parent=Os01t0879400-01
Chr01	irgsp1_rep	CDS	38155161	38155727	.	+	0	Parent=Os01t0879400-01
Chr01	irgsp1_rep	CDS	38155901	38156752	.	+	0	Parent=Os01t0879400-01
Chr01	irgsp1_rep	three_prime_UTR	38156753	38156987	.	+	.	Parent=Os01t0879400-01
Chr01	irgsp1_rep	mRNA	38157319	38159782	.	-	.	ID=Os01t0879500-01;Name=Os01t0879500-01;Locus_id=Os01g0879500;Note=RuBisCO-cytoChrome methylase%2C RMS1 domain containing protein.;Transcript_evidence=AK243108 (DDBJ%2C Best hit);ORF_evidence=XP_002876372.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=SET domain (IPR001214),RuBisCO-cytoChrome methylase%2C RMS1 (IPR011383),Rubisco LS methyltransferase%2C substrate-binding domain (IPR015353);NIAS_FLcDNA=J100026F15;TENOR=Os01t0879500-01;KEGG=Os01t0879500-01
Chr01	irgsp1_rep	five_prime_UTR	38159773	38159782	.	-	.	Parent=Os01t0879500-01
Chr01	irgsp1_rep	CDS	38159741	38159772	.	-	0	Parent=Os01t0879500-01
Chr01	irgsp1_rep	CDS	38159283	38159661	.	-	1	Parent=Os01t0879500-01
Chr01	irgsp1_rep	CDS	38158819	38159015	.	-	0	Parent=Os01t0879500-01
Chr01	irgsp1_rep	CDS	38158515	38158660	.	-	1	Parent=Os01t0879500-01
Chr01	irgsp1_rep	CDS	38158349	38158407	.	-	2	Parent=Os01t0879500-01
Chr01	irgsp1_rep	CDS	38157555	38158229	.	-	0	Parent=Os01t0879500-01
Chr01	irgsp1_rep	three_prime_UTR	38157319	38157554	.	-	.	Parent=Os01t0879500-01
Chr01	irgsp1_rep	mRNA	38164170	38165993	.	+	.	ID=Os01t0879600-00;Name=Os01t0879600-00;Locus_id=Os01g0879600;Note=Protein of unknown function DUF506%2C plant domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3A072 (UniProt);InterPro=Protein of unknown function DUF506%2C plant (IPR006502);TENOR=Os01t0879600-00
Chr01	irgsp1_rep	CDS	38164170	38164403	.	+	0	Parent=Os01t0879600-00
Chr01	irgsp1_rep	CDS	38164504	38164696	.	+	0	Parent=Os01t0879600-00
Chr01	irgsp1_rep	CDS	38165512	38165993	.	+	2	Parent=Os01t0879600-00
Chr01	irgsp1_rep	mRNA	38191821	38192525	.	-	.	ID=Os01t0880100-01;Name=Os01t0880100-01;Locus_id=Os01g0880100;Note=Conserved hypothetical protein.;Transcript_evidence=AK108247 (DDBJ%2C Best hit);ORF_evidence=A2XNX1 (UniProt);NIAS_FLcDNA=002-140-H08;TENOR=Os01t0880100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	38192486	38192525	.	-	.	Parent=Os01t0880100-01
Chr01	irgsp1_rep	CDS	38191991	38192485	.	-	0	Parent=Os01t0880100-01
Chr01	irgsp1_rep	three_prime_UTR	38191821	38191990	.	-	.	Parent=Os01t0880100-01
Chr01	irgsp1_rep	mRNA	38197022	38202612	.	+	.	ID=Os01t0880200-01;Name=Os01t0880200-01;Locus_id=Os01g0880200;RAP-DB Gene Symbol Synonym(s)=OsGUX1;CGSNL Gene Symbol=PGSIP-A1;CGSNL Gene Name=PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN A1;Oryzabase Gene Symbol Synonym(s)=OsPGSIP-A1;Oryzabase Gene Name Synonym(s)=plant glycogenin-like starch initiation protein A1;Note=Xylan glucuronosyltransferase%2C Accumulation of cellulose and hemicellulose in the cell wall deposition;Transcript_evidence=AK100345;ORF_evidence=Q5NA53;GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Nucleotide-diphospho-sugar transferases (IPR029044),Glycosyl transferase%2C family 8 (IPR002495);NIAS_FLcDNA=J023082H20;Manual Curation=March 4%2C 2020;Literature_PMID=32111928;Oryzabase=23271;Expression=AK100345;TENOR=Os01t0880200-01;KEGG=Os01t0880200-01;Subcellular location=Golgi apparatus (GO:0005794)
Chr01	irgsp1_rep	five_prime_UTR	38197022	38197187	.	+	.	Parent=Os01t0880200-01
Chr01	irgsp1_rep	five_prime_UTR	38197730	38197851	.	+	.	Parent=Os01t0880200-01
Chr01	irgsp1_rep	CDS	38197852	38197901	.	+	0	Parent=Os01t0880200-01
Chr01	irgsp1_rep	CDS	38199825	38200025	.	+	1	Parent=Os01t0880200-01
Chr01	irgsp1_rep	CDS	38200197	38200831	.	+	1	Parent=Os01t0880200-01
Chr01	irgsp1_rep	CDS	38201139	38202160	.	+	2	Parent=Os01t0880200-01
Chr01	irgsp1_rep	three_prime_UTR	38202161	38202612	.	+	.	Parent=Os01t0880200-01
Chr01	irgsp1_rep	mRNA	38198391	38202535	.	+	.	ID=Os01t0880200-02;Name=Os01t0880200-02;Locus_id=Os01g0880200;CGSNL Gene Symbol=PGSIP-A1;CGSNL Gene Name=PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN A1;Oryzabase Gene Symbol Synonym(s)=OsPGSIP-A1%2C OsGUX1%2C GUX1;Oryzabase Gene Name Synonym(s)=plant glycogenin-like starch initiation protein A1%2C xylan glucuronosyltransferase 1;Note=Similar to secondary cell wall-related glycosyltransferase family 8.;Transcript_evidence=AK067519 (DDBJ%2C Best hit);ORF_evidence=B6UDC6 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 8 (IPR002495);NIAS_FLcDNA=J013112C08;Oryzabase=23271;Expression=AK067519;TENOR=Os01t0880200-02;KEGG=Os01t0880200-02
Chr01	irgsp1_rep	five_prime_UTR	38198391	38199709	.	+	.	Parent=Os01t0880200-02
Chr01	irgsp1_rep	CDS	38199710	38199726	.	+	0	Parent=Os01t0880200-02
Chr01	irgsp1_rep	CDS	38199825	38200025	.	+	1	Parent=Os01t0880200-02
Chr01	irgsp1_rep	CDS	38200197	38200831	.	+	1	Parent=Os01t0880200-02
Chr01	irgsp1_rep	CDS	38201139	38202160	.	+	2	Parent=Os01t0880200-02
Chr01	irgsp1_rep	three_prime_UTR	38202161	38202535	.	+	.	Parent=Os01t0880200-02
Chr01	irgsp1_rep	mRNA	38199965	38202518	.	+	.	ID=Os01t0880200-03;Name=Os01t0880200-03;Locus_id=Os01g0880200;CGSNL Gene Symbol=PGSIP-A1;CGSNL Gene Name=PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN A1;Oryzabase Gene Symbol Synonym(s)=OsPGSIP-A1%2C OsGUX1%2C GUX1;Oryzabase Gene Name Synonym(s)=plant glycogenin-like starch initiation protein A1%2C xylan glucuronosyltransferase 1;Note=Similar to cDNA clone:J013112C08%2C full insert sequence.;Transcript_evidence=AK071195 (DDBJ%2C Best hit);ORF_evidence=B7EDL1 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 8 (IPR002495);NIAS_FLcDNA=J023087O18;Oryzabase=23271;Expression=AK071195;TENOR=Os01t0880200-03;KEGG=Os01t0880200-03
Chr01	irgsp1_rep	five_prime_UTR	38199965	38199966	.	+	.	Parent=Os01t0880200-03
Chr01	irgsp1_rep	CDS	38199967	38200025	.	+	0	Parent=Os01t0880200-03
Chr01	irgsp1_rep	CDS	38200197	38200831	.	+	1	Parent=Os01t0880200-03
Chr01	irgsp1_rep	CDS	38201139	38202160	.	+	2	Parent=Os01t0880200-03
Chr01	irgsp1_rep	three_prime_UTR	38202161	38202518	.	+	.	Parent=Os01t0880200-03
Chr01	irgsp1_rep	mRNA	38199826	38202367	.	-	.	ID=Os01t0880250-00;Name=Os01t0880250-00;Locus_id=Os01g0880250;Note=Hypothetical protein.;Transcript_evidence=tplb0041a22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0880250-00
Chr01	irgsp1_rep	five_prime_UTR	38202214	38202367	.	-	.	Parent=Os01t0880250-00
Chr01	irgsp1_rep	CDS	38201923	38202213	.	-	0	Parent=Os01t0880250-00
Chr01	irgsp1_rep	three_prime_UTR	38201145	38201922	.	-	.	Parent=Os01t0880250-00
Chr01	irgsp1_rep	three_prime_UTR	38200195	38200841	.	-	.	Parent=Os01t0880250-00
Chr01	irgsp1_rep	three_prime_UTR	38199826	38200021	.	-	.	Parent=Os01t0880250-00
Chr01	irgsp1_rep	mRNA	38206952	38211683	.	-	.	ID=Os01t0880300-02;Name=Os01t0880300-02;Locus_id=Os01g0880300;CGSNL Gene Symbol=PME7;CGSNL Gene Name=PECTIN METHYLESTERASE 7;Oryzabase Gene Symbol Synonym(s)=OsPME7;Oryzabase Gene Name Synonym(s)=pectin methylesterase 7;Note=Similar to Pectin methylesterase-like protein.;Transcript_evidence=AK101962 (DDBJ%2C Best hit),AK105682 (DDBJ%2C Best hit);ORF_evidence=A2WXL1 (UniProt);NIAS_FLcDNA=J033076D13,001-201-B06;Oryzabase=13171;Expression=AK101962;TENOR=Os01t0880300-02;KEGG=Os01t0880300-02
Chr01	irgsp1_rep	five_prime_UTR	38211639	38211683	.	-	.	Parent=Os01t0880300-02
Chr01	irgsp1_rep	CDS	38210708	38211638	.	-	0	Parent=Os01t0880300-02
Chr01	irgsp1_rep	CDS	38207111	38207802	.	-	2	Parent=Os01t0880300-02
Chr01	irgsp1_rep	three_prime_UTR	38206952	38207110	.	-	.	Parent=Os01t0880300-02
Chr01	irgsp1_rep	mRNA	38207129	38210880	.	+	.	ID=Os01t0880350-00;Name=Os01t0880350-00;Locus_id=Os01g0880350;Note=Hypothetical protein.;Transcript_evidence=EU943103 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0880350-00
Chr01	irgsp1_rep	CDS	38207129	38207824	.	+	0	Parent=Os01t0880350-00
Chr01	irgsp1_rep	three_prime_UTR	38207825	38207860	.	+	.	Parent=Os01t0880350-00
Chr01	irgsp1_rep	three_prime_UTR	38210683	38210880	.	+	.	Parent=Os01t0880350-00
Chr01	irgsp1_rep	mRNA	38212858	38217134	.	-	.	ID=Os01t0880400-01;Name=Os01t0880400-01;Locus_id=Os01g0880400;Oryzabase Gene Symbol Synonym(s)=OsTBL26%2C TBL26;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 26;Note=Protein of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=AK066678 (DDBJ%2C Best hit);ORF_evidence=A2WXL2 (UniProt);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=J013070A21;Oryzabase=21481;Expression=AK066678;TENOR=Os01t0880400-01;KEGG=Os01t0880400-01
Chr01	irgsp1_rep	five_prime_UTR	38216665	38217134	.	-	.	Parent=Os01t0880400-01
Chr01	irgsp1_rep	CDS	38215844	38216664	.	-	0	Parent=Os01t0880400-01
Chr01	irgsp1_rep	CDS	38215000	38215158	.	-	1	Parent=Os01t0880400-01
Chr01	irgsp1_rep	CDS	38214549	38214826	.	-	1	Parent=Os01t0880400-01
Chr01	irgsp1_rep	CDS	38213151	38213173	.	-	2	Parent=Os01t0880400-01
Chr01	irgsp1_rep	three_prime_UTR	38212858	38213150	.	-	.	Parent=Os01t0880400-01
Chr01	irgsp1_rep	mRNA	38212858	38213150	.	-	.	ID=Os01t0880400-02;Name=Os01t0880400-02;Locus_id=Os01g0880400;Oryzabase Gene Symbol Synonym(s)=OsTBL26%2C TBL26;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 26;Note=Hypothetical gene.;Transcript_evidence=AK058783 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-002-D04;Oryzabase=21481;Expression=AK058783;TENOR=Os01t0880400-02;KEGG=Os01t0880400-02
Chr01	irgsp1_rep	CDS	38212932	38213150	.	-	0	Parent=Os01t0880400-02
Chr01	irgsp1_rep	three_prime_UTR	38212858	38212931	.	-	.	Parent=Os01t0880400-02
Chr01	irgsp1_rep	mRNA	38224446	38225878	.	+	.	ID=Os01t0880800-01;Name=Os01t0880800-01;Locus_id=Os01g0880800;Oryzabase Gene Name Synonym(s)=Acyl desaturase;Note=Similar to Acyl-[acyl-carrier-protein] desaturase%2C chloroplast precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase).;Transcript_evidence=AK101524 (DDBJ%2C Best hit),AK059526 (DDBJ%2C Best hit),AK120809 (DDBJ%2C Best hit);ORF_evidence=B8A7A3 (UniProt);GO=Biological Process: fatty acid metabolic process (GO:0006631),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: acyl-[acyl-carrier-protein] desaturase activity (GO:0045300),Molecular Function: transition metal ion binding (GO:0046914);InterPro=Fatty acid desaturase%2C type 2 (IPR005067),Ferritin/ribonucleotide reductase-like (IPR009078),Ribonucleotide reductase-related (IPR012348);NIAS_FLcDNA=J033046O20,001-029-D03,J023014E24;Oryzabase=21998;TENOR=Os01t0880800-01
Chr01	irgsp1_rep	five_prime_UTR	38224446	38224517	.	+	.	Parent=Os01t0880800-01
Chr01	irgsp1_rep	CDS	38224518	38225093	.	+	0	Parent=Os01t0880800-01
Chr01	irgsp1_rep	CDS	38225180	38225749	.	+	0	Parent=Os01t0880800-01
Chr01	irgsp1_rep	three_prime_UTR	38225750	38225878	.	+	.	Parent=Os01t0880800-01
Chr01	irgsp1_rep	mRNA	38224640	38225740	.	-	.	ID=Os01t0880850-00;Name=Os01t0880850-00;Locus_id=Os01g0880850;Note=Hypothetical protein.;Transcript_evidence=tplb0059g06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0880850-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	38225191	38225740	.	-	0	Parent=Os01t0880850-00
Chr01	irgsp1_rep	CDS	38224640	38225101	.	-	2	Parent=Os01t0880850-00
Chr01	irgsp1_rep	mRNA	38226425	38228440	.	-	.	ID=Os01t0880900-01;Name=Os01t0880900-01;Locus_id=Os01g0880900;Note=Similar to Pentatricopeptide repeat protein PPR868-14.;Transcript_evidence=AK069671 (DDBJ%2C Best hit);ORF_evidence=B6U7N3 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J023027J18;TENOR=Os01t0880900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	38228339	38228440	.	-	.	Parent=Os01t0880900-01
Chr01	irgsp1_rep	CDS	38226692	38228338	.	-	0	Parent=Os01t0880900-01
Chr01	irgsp1_rep	three_prime_UTR	38226425	38226691	.	-	.	Parent=Os01t0880900-01
Chr01	irgsp1_rep	mRNA	38228812	38237228	.	-	.	ID=Os01t0881000-00;Name=Os01t0881000-00;Locus_id=Os01g0881000;CGSNL Gene Symbol=DLN32;CGSNL Gene Name=DLN REPRESSOR 32;Oryzabase Gene Symbol Synonym(s)=CHR703%2C OsDLN32%2C OsCHR703;Oryzabase Gene Name Synonym(s)=CHD-related gene 703%2C DLN repressor 32%2C DLN motif protein 32;Note=SNF2-related domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9EUY5 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: helicase activity (GO:0004386),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026),Molecular Function: zinc ion binding (GO:0008270);InterPro=SNF2-related (IPR000330),Chromo domain/shadow (IPR000953),Helicase%2C C-terminal (IPR001650),Zinc finger%2C PHD-type (IPR001965),DNA/RNA helicase%2C ATP-dependent%2C DEAH-box type%2C conserved site (IPR002464),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),DEAD-like helicase (IPR014001),Chromo domain-like (IPR016197),Zinc finger%2C PHD-type%2C conserved site (IPR019786),Zinc finger%2C PHD-finger (IPR019787),Chromo domain (IPR023780);Oryzabase=10883;TENOR=Os01t0881000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	38237105	38237228	.	-	0	Parent=Os01t0881000-00
Chr01	irgsp1_rep	CDS	38236608	38236718	.	-	2	Parent=Os01t0881000-00
Chr01	irgsp1_rep	CDS	38236408	38236512	.	-	2	Parent=Os01t0881000-00
Chr01	irgsp1_rep	CDS	38236003	38236176	.	-	2	Parent=Os01t0881000-00
Chr01	irgsp1_rep	CDS	38235846	38235914	.	-	2	Parent=Os01t0881000-00
Chr01	irgsp1_rep	CDS	38235612	38235713	.	-	2	Parent=Os01t0881000-00
Chr01	irgsp1_rep	CDS	38235107	38235183	.	-	2	Parent=Os01t0881000-00
Chr01	irgsp1_rep	CDS	38234982	38235033	.	-	0	Parent=Os01t0881000-00
Chr01	irgsp1_rep	CDS	38234513	38234586	.	-	2	Parent=Os01t0881000-00
Chr01	irgsp1_rep	CDS	38234155	38234433	.	-	0	Parent=Os01t0881000-00
Chr01	irgsp1_rep	CDS	38233596	38233660	.	-	0	Parent=Os01t0881000-00
Chr01	irgsp1_rep	CDS	38232810	38233216	.	-	1	Parent=Os01t0881000-00
Chr01	irgsp1_rep	CDS	38232396	38232520	.	-	2	Parent=Os01t0881000-00
Chr01	irgsp1_rep	CDS	38232045	38232237	.	-	0	Parent=Os01t0881000-00
Chr01	irgsp1_rep	CDS	38231842	38231930	.	-	2	Parent=Os01t0881000-00
Chr01	irgsp1_rep	CDS	38231152	38231321	.	-	0	Parent=Os01t0881000-00
Chr01	irgsp1_rep	CDS	38230806	38230995	.	-	1	Parent=Os01t0881000-00
Chr01	irgsp1_rep	CDS	38229947	38230059	.	-	0	Parent=Os01t0881000-00
Chr01	irgsp1_rep	CDS	38229691	38229811	.	-	1	Parent=Os01t0881000-00
Chr01	irgsp1_rep	CDS	38229536	38229563	.	-	0	Parent=Os01t0881000-00
Chr01	irgsp1_rep	CDS	38228812	38229449	.	-	2	Parent=Os01t0881000-00
Chr01	irgsp1_rep	mRNA	38238479	38240305	.	-	.	ID=Os01t0881100-01;Name=Os01t0881100-01;Locus_id=Os01g0881100;Oryzabase Gene Symbol Synonym(s)=OsSTA37;Note=Epsin-like%2C N-terminal domain containing protein.;Transcript_evidence=AK109822 (DDBJ%2C Best hit);ORF_evidence=A2WXL8 (UniProt);GO=Biological Process: clathrin coat assembly (GO:0048268),Cellular Component: clathrin coat (GO:0030118),Molecular Function: phospholipid binding (GO:0005543),Molecular Function: 1-phosphatidylinositol binding (GO:0005545),Molecular Function: clathrin binding (GO:0030276);InterPro=ENTH/VHS (IPR008942),ANTH (IPR011417),Epsin-like%2C N-terminal (IPR013809),Clathrin adaptor%2C phosphoinositide-binding%2C GAT-like (IPR014712);NIAS_FLcDNA=002-148-A09;Oryzabase=19344;Expression=AK109822;TENOR=Os01t0881100-01;KEGG=Os01t0881100-01
Chr01	irgsp1_rep	five_prime_UTR	38240133	38240305	.	-	.	Parent=Os01t0881100-01
Chr01	irgsp1_rep	CDS	38238567	38240132	.	-	0	Parent=Os01t0881100-01
Chr01	irgsp1_rep	three_prime_UTR	38238479	38238566	.	-	.	Parent=Os01t0881100-01
Chr01	irgsp1_rep	mRNA	38254053	38254647	.	+	.	ID=Os01t0881300-01;Name=Os01t0881300-01;Locus_id=Os01g0881300;CGSNL Gene Symbol=SWEET1A;CGSNL Gene Name=SWEET1A;Oryzabase Gene Symbol Synonym(s)=OsSWEET1a%2C SWEET1a;Note=Non-protein coding transcript.;Transcript_evidence=AK063011 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-110-A05;Oryzabase=9088;TENOR=Os01t0881300-01
Chr01	irgsp1_rep	exon	38254053	38254647	.	+	.	Parent=Os01t0881300-01
Chr01	irgsp1_rep	mRNA	38254055	38257595	.	+	.	ID=Os01t0881300-02;Name=Os01t0881300-02;Locus_id=Os01g0881300;CGSNL Gene Symbol=SWEET1A;CGSNL Gene Name=SWEET1A;Oryzabase Gene Symbol Synonym(s)=OsSWEET1a%2C SWEET1a;Note=MtN3 and saliva related transmembrane protein family protein.;Transcript_evidence=AK067960 (DDBJ%2C Best hit),AK099531 (DDBJ%2C Best hit);ORF_evidence=Q8RZQ8 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=RAG1-activating protein-1-related (IPR004316);NIAS_FLcDNA=J013123F10,J013031J21;Oryzabase=9088;TENOR=Os01t0881300-02
Chr01	irgsp1_rep	five_prime_UTR	38254055	38254203	.	+	.	Parent=Os01t0881300-02
Chr01	irgsp1_rep	CDS	38254204	38254240	.	+	0	Parent=Os01t0881300-02
Chr01	irgsp1_rep	CDS	38254452	38254488	.	+	2	Parent=Os01t0881300-02
Chr01	irgsp1_rep	CDS	38254922	38255017	.	+	1	Parent=Os01t0881300-02
Chr01	irgsp1_rep	CDS	38255914	38256193	.	+	1	Parent=Os01t0881300-02
Chr01	irgsp1_rep	CDS	38256442	38256561	.	+	0	Parent=Os01t0881300-02
Chr01	irgsp1_rep	CDS	38257110	38257361	.	+	0	Parent=Os01t0881300-02
Chr01	irgsp1_rep	three_prime_UTR	38257362	38257595	.	+	.	Parent=Os01t0881300-02
Chr01	irgsp1_rep	mRNA	38257939	38261435	.	+	.	ID=Os01t0881400-00;Name=Os01t0881400-00;Locus_id=Os01g0881400;Note=DNA repair metallo-beta-lactamase domain containing protein.;Transcript_evidence=tplb0060b14 (Wheat FLcDNA);ORF_evidence=NP_564070.1 (RefSeq);InterPro=DNA repair metallo-beta-lactamase (IPR011084);TENOR=Os01t0881400-00;KEGG=Os01t0881400-00
Chr01	irgsp1_rep	five_prime_UTR	38257939	38258008	.	+	.	Parent=Os01t0881400-00
Chr01	irgsp1_rep	CDS	38258009	38258212	.	+	0	Parent=Os01t0881400-00
Chr01	irgsp1_rep	CDS	38258308	38258413	.	+	0	Parent=Os01t0881400-00
Chr01	irgsp1_rep	CDS	38258733	38258944	.	+	2	Parent=Os01t0881400-00
Chr01	irgsp1_rep	CDS	38259047	38259253	.	+	0	Parent=Os01t0881400-00
Chr01	irgsp1_rep	CDS	38260068	38261435	.	+	0	Parent=Os01t0881400-00
Chr01	irgsp1_rep	mRNA	38260043	38261255	.	-	.	ID=Os01t0881450-00;Name=Os01t0881450-00;Locus_id=Os01g0881450;Note=Non-protein coding transcript.;Transcript_evidence=CT834915 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os01t0881450-00
Chr01	irgsp1_rep	exon	38261199	38261255	.	-	.	Parent=Os01t0881450-00
Chr01	irgsp1_rep	exon	38261002	38261139	.	-	.	Parent=Os01t0881450-00
Chr01	irgsp1_rep	exon	38260043	38260927	.	-	.	Parent=Os01t0881450-00
Chr01	irgsp1_rep	mRNA	38261869	38265489	.	-	.	ID=Os01t0881500-01;Name=Os01t0881500-01;Locus_id=Os01g0881500;CGSNL Gene Symbol=GRAS3;CGSNL Gene Name=GRAS PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=SCL1%2C OsSCL1%2C OsGRAS-3%2C OsGRAS3%2C GRAS-3;Oryzabase Gene Name Synonym(s)=Arabidopsis thaliana scarecrow-like 1%2C GRAS protein 3;Note=Similar to Scarecrow-like 1 (Fragment).;Transcript_evidence=AK067457 (DDBJ%2C Best hit);ORF_evidence=A5HJS4 (UniProt);InterPro=Transcription factor GRAS (IPR005202);NIAS_FLcDNA=J013106L10;Oryzabase=16042;Expression=AK067457;TENOR=Os01t0881500-01;KEGG=Os01t0881500-01
Chr01	irgsp1_rep	five_prime_UTR	38265339	38265489	.	-	.	Parent=Os01t0881500-01
Chr01	irgsp1_rep	five_prime_UTR	38264088	38264175	.	-	.	Parent=Os01t0881500-01
Chr01	irgsp1_rep	CDS	38262781	38264087	.	-	0	Parent=Os01t0881500-01
Chr01	irgsp1_rep	CDS	38262453	38262608	.	-	1	Parent=Os01t0881500-01
Chr01	irgsp1_rep	CDS	38262138	38262336	.	-	1	Parent=Os01t0881500-01
Chr01	irgsp1_rep	three_prime_UTR	38261869	38262137	.	-	.	Parent=Os01t0881500-01
Chr01	irgsp1_rep	mRNA	38261856	38265459	.	-	.	ID=Os01t0881500-02;Name=Os01t0881500-02;Locus_id=Os01g0881500;CGSNL Gene Symbol=GRAS3;CGSNL Gene Name=GRAS PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=SCL1%2C OsSCL1%2C OsGRAS-3%2C OsGRAS3%2C GRAS-3;Oryzabase Gene Name Synonym(s)=Arabidopsis thaliana scarecrow-like 1%2C GRAS protein 3;Note=Similar to Scarecrow-like 1 (Fragment).;Transcript_evidence=AK060833 (DDBJ%2C Best hit);ORF_evidence=A5HJS4 (UniProt);InterPro=Transcription factor GRAS (IPR005202);NIAS_FLcDNA=001-034-C07;Oryzabase=16042;TENOR=Os01t0881500-02
Chr01	irgsp1_rep	five_prime_UTR	38265339	38265459	.	-	.	Parent=Os01t0881500-02
Chr01	irgsp1_rep	five_prime_UTR	38264088	38264175	.	-	.	Parent=Os01t0881500-02
Chr01	irgsp1_rep	CDS	38262781	38264087	.	-	0	Parent=Os01t0881500-02
Chr01	irgsp1_rep	CDS	38262453	38262608	.	-	1	Parent=Os01t0881500-02
Chr01	irgsp1_rep	CDS	38262138	38262336	.	-	1	Parent=Os01t0881500-02
Chr01	irgsp1_rep	three_prime_UTR	38261856	38262137	.	-	.	Parent=Os01t0881500-02
Chr01	irgsp1_rep	mRNA	38273297	38274800	.	+	.	ID=Os01t0881800-01;Name=Os01t0881800-01;Locus_id=Os01g0881800;Note=Conserved hypothetical protein.;Transcript_evidence=AK109594 (DDBJ%2C Best hit);ORF_evidence=Q6Z4F4 (UniProt);NIAS_FLcDNA=002-137-C09;TENOR=Os01t0881800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	38273297	38273403	.	+	.	Parent=Os01t0881800-01
Chr01	irgsp1_rep	CDS	38273404	38274510	.	+	0	Parent=Os01t0881800-01
Chr01	irgsp1_rep	three_prime_UTR	38274511	38274800	.	+	.	Parent=Os01t0881800-01
Chr01	irgsp1_rep	mRNA	38275062	38279030	.	-	.	ID=Os01t0881900-01;Name=Os01t0881900-01;Locus_id=Os01g0881900;Note=Leucine-rich repeat%2C cysteine-containing containing protein.;Transcript_evidence=AK102849 (DDBJ%2C Best hit);ORF_evidence=B4G0B1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C cysteine-containing subtype (IPR006553);NIAS_FLcDNA=J033110C14;Oryzabase=17573;Expression=AK102849;TENOR=Os01t0881900-01;KEGG=Os01t0881900-01
Chr01	irgsp1_rep	five_prime_UTR	38278193	38279030	.	-	.	Parent=Os01t0881900-01
Chr01	irgsp1_rep	five_prime_UTR	38277849	38277893	.	-	.	Parent=Os01t0881900-01
Chr01	irgsp1_rep	CDS	38277589	38277848	.	-	0	Parent=Os01t0881900-01
Chr01	irgsp1_rep	CDS	38276258	38276606	.	-	1	Parent=Os01t0881900-01
Chr01	irgsp1_rep	CDS	38276051	38276192	.	-	0	Parent=Os01t0881900-01
Chr01	irgsp1_rep	CDS	38275255	38275643	.	-	2	Parent=Os01t0881900-01
Chr01	irgsp1_rep	three_prime_UTR	38275062	38275254	.	-	.	Parent=Os01t0881900-01
Chr01	irgsp1_rep	mRNA	38282146	38282720	.	+	.	ID=Os01t0881950-00;Name=Os01t0881950-00;Locus_id=Os01g0881950;Note=Non-protein coding transcript.;Transcript_evidence=CT834826 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os01t0881950-00
Chr01	irgsp1_rep	exon	38282146	38282720	.	+	.	Parent=Os01t0881950-00
Chr01	irgsp1_rep	mRNA	38282607	38283058	.	-	.	ID=Os01t0881966-01;Name=Os01t0881966-01;Locus_id=Os01g0881966;Note=Hypothetical conserved gene.;Transcript_evidence=AK242526 (DDBJ%2C Best hit);ORF_evidence=Q5N7J0 (UniProt);NIAS_FLcDNA=J080315C10;TENOR=Os01t0881966-01;KEGG=Os01t0881966-01
Chr01	irgsp1_rep	CDS	38282948	38283058	.	-	0	Parent=Os01t0881966-01
Chr01	irgsp1_rep	three_prime_UTR	38282607	38282947	.	-	.	Parent=Os01t0881966-01
Chr01	irgsp1_rep	mRNA	38287883	38289428	.	+	.	ID=Os01t0882000-01;Name=Os01t0882000-01;Locus_id=Os01g0882000;Note=Conserved hypothetical protein.;Transcript_evidence=AK108653 (DDBJ%2C Best hit);ORF_evidence=B8A7A8 (UniProt);NIAS_FLcDNA=002-148-C11;Expression=AK108653;TENOR=Os01t0882000-01;KEGG=Os01t0882000-01
Chr01	irgsp1_rep	five_prime_UTR	38287883	38287951	.	+	.	Parent=Os01t0882000-01
Chr01	irgsp1_rep	CDS	38287952	38288134	.	+	0	Parent=Os01t0882000-01
Chr01	irgsp1_rep	three_prime_UTR	38288135	38289428	.	+	.	Parent=Os01t0882000-01
Chr01	irgsp1_rep	mRNA	38290773	38290970	.	+	.	ID=Os01t0882100-00;Name=Os01t0882100-00;Locus_id=Os01g0882100;Note=Hypothetical conserved gene.;Transcript_evidence=CT835521 (DDBJ%2C Best hit);ORF_evidence=NP_001045006.1 (RefSeq);TENOR=Os01t0882100-00;KEGG=Os01t0882100-00
Chr01	irgsp1_rep	five_prime_UTR	38290773	38290773	.	+	.	Parent=Os01t0882100-00
Chr01	irgsp1_rep	CDS	38290774	38290869	.	+	0	Parent=Os01t0882100-00
Chr01	irgsp1_rep	three_prime_UTR	38290870	38290970	.	+	.	Parent=Os01t0882100-00
Chr01	irgsp1_rep	mRNA	38291672	38292452	.	-	.	ID=Os01t0882200-00;Name=Os01t0882200-00;Locus_id=Os01g0882200;Note=Similar to octopine synthase binding factor3.;Transcript_evidence=BT042450 (DDBJ);ORF_evidence=NP_001105448.1 (RefSeq);TENOR=Os01t0882200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	38292345	38292452	.	-	.	Parent=Os01t0882200-00
Chr01	irgsp1_rep	CDS	38292249	38292344	.	-	0	Parent=Os01t0882200-00
Chr01	irgsp1_rep	CDS	38291810	38292142	.	-	0	Parent=Os01t0882200-00
Chr01	irgsp1_rep	three_prime_UTR	38291672	38291809	.	-	.	Parent=Os01t0882200-00
Chr01	irgsp1_rep	mRNA	38300260	38300540	.	-	.	ID=Os01t0882250-00;Name=Os01t0882250-00;Locus_id=Os01g0882250;Note=Non-protein coding transcript.;Transcript_evidence=EU941502 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0882250-00
Chr01	irgsp1_rep	exon	38300260	38300540	.	-	.	Parent=Os01t0882250-00
Chr01	irgsp1_rep	mRNA	38299999	38305642	.	+	.	ID=Os01t0882300-01;Name=Os01t0882300-01;Locus_id=Os01g0882300;Note=Protein of unknown function DUF803 family protein.;Transcript_evidence=AK102845 (DDBJ%2C Best hit);ORF_evidence=NP_564447.1 (RefSeq);InterPro=Protein of unknown function DUF803 (IPR008521);NIAS_FLcDNA=J033110A12;Expression=AK102845;TENOR=Os01t0882300-01;KEGG=Os01t0882300-01
Chr01	irgsp1_rep	five_prime_UTR	38299999	38300352	.	+	.	Parent=Os01t0882300-01
Chr01	irgsp1_rep	CDS	38300353	38300536	.	+	0	Parent=Os01t0882300-01
Chr01	irgsp1_rep	CDS	38301208	38301264	.	+	2	Parent=Os01t0882300-01
Chr01	irgsp1_rep	CDS	38301350	38301440	.	+	2	Parent=Os01t0882300-01
Chr01	irgsp1_rep	CDS	38301540	38301700	.	+	1	Parent=Os01t0882300-01
Chr01	irgsp1_rep	CDS	38301786	38301913	.	+	2	Parent=Os01t0882300-01
Chr01	irgsp1_rep	CDS	38302032	38302169	.	+	0	Parent=Os01t0882300-01
Chr01	irgsp1_rep	CDS	38302458	38302550	.	+	0	Parent=Os01t0882300-01
Chr01	irgsp1_rep	CDS	38304960	38305065	.	+	0	Parent=Os01t0882300-01
Chr01	irgsp1_rep	CDS	38305134	38305258	.	+	2	Parent=Os01t0882300-01
Chr01	irgsp1_rep	three_prime_UTR	38305259	38305642	.	+	.	Parent=Os01t0882300-01
Chr01	irgsp1_rep	mRNA	38301350	38305568	.	+	.	ID=Os01t0882300-02;Name=Os01t0882300-02;Locus_id=Os01g0882300;Note=Similar to permease-related.;Transcript_evidence=AK058265 (DDBJ%2C Best hit);ORF_evidence=NP_564447.1 (RefSeq);InterPro=Protein of unknown function DUF803 (IPR008521);NIAS_FLcDNA=001-013-A05;Expression=AK058265;TENOR=Os01t0882300-02;KEGG=Os01t0882300-02
Chr01	irgsp1_rep	five_prime_UTR	38301350	38301351	.	+	.	Parent=Os01t0882300-02
Chr01	irgsp1_rep	CDS	38301352	38301440	.	+	0	Parent=Os01t0882300-02
Chr01	irgsp1_rep	CDS	38301540	38301700	.	+	1	Parent=Os01t0882300-02
Chr01	irgsp1_rep	CDS	38301786	38301913	.	+	2	Parent=Os01t0882300-02
Chr01	irgsp1_rep	CDS	38302032	38302169	.	+	0	Parent=Os01t0882300-02
Chr01	irgsp1_rep	CDS	38302458	38302550	.	+	0	Parent=Os01t0882300-02
Chr01	irgsp1_rep	CDS	38304960	38305065	.	+	0	Parent=Os01t0882300-02
Chr01	irgsp1_rep	CDS	38305134	38305258	.	+	2	Parent=Os01t0882300-02
Chr01	irgsp1_rep	three_prime_UTR	38305259	38305568	.	+	.	Parent=Os01t0882300-02
Chr01	irgsp1_rep	mRNA	38305824	38306726	.	+	.	ID=Os01t0882400-01;Name=Os01t0882400-01;Locus_id=Os01g0882400;Note=Protein of unknown function DUF679 domain containing protein.;Transcript_evidence=AK108538 (DDBJ%2C Best hit);ORF_evidence=A3A091 (UniProt);InterPro=Protein of unknown function DUF679 (IPR007770);NIAS_FLcDNA=002-144-C10;TENOR=Os01t0882400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	38305824	38306543	.	+	0	Parent=Os01t0882400-01
Chr01	irgsp1_rep	three_prime_UTR	38306544	38306726	.	+	.	Parent=Os01t0882400-01
Chr01	irgsp1_rep	mRNA	38306570	38307754	.	-	.	ID=Os01t0882500-00;Name=Os01t0882500-00;Locus_id=Os01g0882500;Note=Similar to NADH dehydrogenase I subunit N.;Transcript_evidence=AK365893 (DDBJ);ORF_evidence=B4FKX8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: membrane (GO:0016020),Molecular Function: oxidoreductase activity%2C acting on NADH or NADPH%2C quinone or similar compound as acceptor (GO:0016655);InterPro=NAD(P)H-quinone oxidoreductase%2C subunit N (IPR020874);TENOR=Os01t0882500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	38307704	38307754	.	-	.	Parent=Os01t0882500-00
Chr01	irgsp1_rep	CDS	38307341	38307703	.	-	0	Parent=Os01t0882500-00
Chr01	irgsp1_rep	CDS	38307109	38307225	.	-	0	Parent=Os01t0882500-00
Chr01	irgsp1_rep	CDS	38306910	38306995	.	-	0	Parent=Os01t0882500-00
Chr01	irgsp1_rep	CDS	38306756	38306825	.	-	1	Parent=Os01t0882500-00
Chr01	irgsp1_rep	three_prime_UTR	38306570	38306755	.	-	.	Parent=Os01t0882500-00
Chr01	irgsp1_rep	mRNA	38310588	38313631	.	-	.	ID=Os01t0882800-01;Name=Os01t0882800-01;Locus_id=Os01g0882800;CGSNL Gene Symbol=AAP11E;CGSNL Gene Name=AMINO ACID PERMEASE 11E;Oryzabase Gene Symbol Synonym(s)=OsAAP11E%2C OsAAP8%2C AAP8;Oryzabase Gene Name Synonym(s)=amino acid permease 11E%2C amino acid permease 8%2C amino acid/auxin permease 8;Note=Similar to Amino acid carrier (Fragment).;Transcript_evidence=AK059325 (DDBJ%2C Best hit);ORF_evidence=NP_001149036.1 (RefSeq);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=001-026-A01;Oryzabase=18492;Expression=AK059325;TENOR=Os01t0882800-01;KEGG=Os01t0882800-01
Chr01	irgsp1_rep	five_prime_UTR	38313488	38313631	.	-	.	Parent=Os01t0882800-01
Chr01	irgsp1_rep	five_prime_UTR	38312450	38312465	.	-	.	Parent=Os01t0882800-01
Chr01	irgsp1_rep	CDS	38312323	38312449	.	-	0	Parent=Os01t0882800-01
Chr01	irgsp1_rep	CDS	38311697	38312239	.	-	2	Parent=Os01t0882800-01
Chr01	irgsp1_rep	CDS	38310818	38311614	.	-	2	Parent=Os01t0882800-01
Chr01	irgsp1_rep	three_prime_UTR	38310588	38310817	.	-	.	Parent=Os01t0882800-01
Chr01	irgsp1_rep	mRNA	38310829	38312270	.	+	.	ID=Os01t0882900-00;Name=Os01t0882900-00;Locus_id=Os01g0882900;Note=Hypothetical protein.;Transcript_evidence=tplb0036o08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0882900-00
Chr01	irgsp1_rep	five_prime_UTR	38310829	38310829	.	+	.	Parent=Os01t0882900-00
Chr01	irgsp1_rep	CDS	38310830	38311616	.	+	0	Parent=Os01t0882900-00
Chr01	irgsp1_rep	CDS	38311699	38312096	.	+	2	Parent=Os01t0882900-00
Chr01	irgsp1_rep	three_prime_UTR	38312097	38312270	.	+	.	Parent=Os01t0882900-00
Chr01	irgsp1_rep	mRNA	38319060	38325583	.	+	.	ID=Os01t0883000-00;Name=Os01t0883000-00;Locus_id=Os01g0883000;CGSNL Gene Symbol=RLCK50;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 50;Oryzabase Gene Symbol Synonym(s)=OsRLCK50;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 50;Note=Similar to protein kinase.;Transcript_evidence=BT086285 (DDBJ);ORF_evidence=NP_001148107.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18767;TENOR=Os01t0883000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	38319060	38320952	.	+	0	Parent=Os01t0883000-00
Chr01	irgsp1_rep	CDS	38324948	38325583	.	+	0	Parent=Os01t0883000-00
Chr01	irgsp1_rep	mRNA	38321342	38323892	.	-	.	ID=Os01t0883100-01;Name=Os01t0883100-01;Locus_id=Os01g0883100;CGSNL Gene Symbol=MADS2;CGSNL Gene Name=MADS BOX GENE 2;Oryzabase Gene Symbol Synonym(s)=OsMADS2%2C RMADS219%2C NMADS1%2C PI2%2C nmads1%2C DLN33%2C OsDLN33;Oryzabase Gene Name Synonym(s)=MADS box gene2%2C MADS-box transcription factor 2%2C GLOBOSA(GLO)-like MADS-box gene-2%2C DLN repressor 33%2C DLN motif protein 33;Note=Similar to PISTILLATA-like MADS box protein.;Transcript_evidence=AK070894 (DDBJ%2C Best hit);ORF_evidence=Q40702 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box (IPR002100),Transcription factor%2C K-box (IPR002487);NIAS_FLcDNA=J023072H23;Oryzabase=3075;Expression=AK070894;TENOR=Os01t0883100-01;KEGG=Os01t0883100-01
Chr01	irgsp1_rep	five_prime_UTR	38323818	38323892	.	-	.	Parent=Os01t0883100-01
Chr01	irgsp1_rep	CDS	38323630	38323817	.	-	0	Parent=Os01t0883100-01
Chr01	irgsp1_rep	CDS	38323206	38323272	.	-	1	Parent=Os01t0883100-01
Chr01	irgsp1_rep	CDS	38323063	38323124	.	-	0	Parent=Os01t0883100-01
Chr01	irgsp1_rep	CDS	38322848	38322947	.	-	1	Parent=Os01t0883100-01
Chr01	irgsp1_rep	CDS	38322699	38322728	.	-	0	Parent=Os01t0883100-01
Chr01	irgsp1_rep	CDS	38322537	38322581	.	-	0	Parent=Os01t0883100-01
Chr01	irgsp1_rep	CDS	38321693	38321830	.	-	0	Parent=Os01t0883100-01
Chr01	irgsp1_rep	three_prime_UTR	38321342	38321692	.	-	.	Parent=Os01t0883100-01
Chr01	irgsp1_rep	mRNA	38329179	38332595	.	+	.	ID=Os01t0883200-01;Name=Os01t0883200-01;Locus_id=Os01g0883200;Note=Conserved hypothetical protein.;Transcript_evidence=AK058727 (DDBJ%2C Best hit);ORF_evidence=B8A7B3 (UniProt);NIAS_FLcDNA=001-019-F06;TENOR=Os01t0883200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	38329179	38329180	.	+	.	Parent=Os01t0883200-01
Chr01	irgsp1_rep	CDS	38329181	38329303	.	+	0	Parent=Os01t0883200-01
Chr01	irgsp1_rep	CDS	38329445	38329535	.	+	0	Parent=Os01t0883200-01
Chr01	irgsp1_rep	CDS	38329625	38329737	.	+	2	Parent=Os01t0883200-01
Chr01	irgsp1_rep	CDS	38330179	38330265	.	+	0	Parent=Os01t0883200-01
Chr01	irgsp1_rep	CDS	38330583	38330705	.	+	0	Parent=Os01t0883200-01
Chr01	irgsp1_rep	CDS	38330799	38330933	.	+	0	Parent=Os01t0883200-01
Chr01	irgsp1_rep	CDS	38331178	38331225	.	+	0	Parent=Os01t0883200-01
Chr01	irgsp1_rep	CDS	38331734	38331835	.	+	0	Parent=Os01t0883200-01
Chr01	irgsp1_rep	CDS	38332062	38332457	.	+	0	Parent=Os01t0883200-01
Chr01	irgsp1_rep	three_prime_UTR	38332458	38332595	.	+	.	Parent=Os01t0883200-01
Chr01	irgsp1_rep	mRNA	38344272	38344937	.	+	.	ID=Os01t0883400-00;Name=Os01t0883400-00;Locus_id=Os01g0883400;Note=Similar to PHD finger protein-like protein (Fragment).;Transcript_evidence=DQ497409 (DDBJ);ORF_evidence=Q1HDY0 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-type%2C conserved site (IPR019786),Zinc finger%2C PHD-finger (IPR019787);TENOR=Os01t0883400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	38344272	38344937	.	+	0	Parent=Os01t0883400-00
Chr01	irgsp1_rep	mRNA	38333950	38334688	.	+	.	ID=Os01t0883600-01;Name=Os01t0883600-01;Locus_id=Os01g0883600;Note=Non-protein coding transcript.;Transcript_evidence=AK242719 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090044A02;TENOR=Os01t0883600-01
Chr01	irgsp1_rep	exon	38333950	38334688	.	+	.	Parent=Os01t0883600-01
Chr01	irgsp1_rep	mRNA	38382385	38385469	.	+	.	ID=Os01t0883800-01;Name=Os01t0883800-01;Locus_id=Os01g0883800;CGSNL Gene Symbol=SD1;CGSNL Gene Name=SEMIDWARF 1;Oryzabase Gene Symbol Synonym(s)=sd1%2C sd1 (d47%2C sd1-d%2C sd1-1)%2C d49(sd1-r)%2C d47%2C C20OX2%2C OsGA20ox-2%2C OsGA20ox2%2C GA20ox-2%2C GA20OX2%2C GA20ox2%2C sd-1%2C SD1-ja%2C SD1-in%2C sd1-2%2C Sd-1%2C GA20%2C 20ox2%2C Os20ox2;Oryzabase Gene Name Synonym(s)=dee-geo-woo-gen dwarf(sd1-d)%2C green revolution gene%2C semidwarf-1%2C GA C20oxidase2%2C semidwarf-1%2C reimei dwarf(sd1-r)%2C Calrose76(sd1-3)%2C Jikkoku(sd1-2). rice GA 20-oxidase2%2C GA 20-oxidase 2%2C Gibberellin 20 oxidase 2%2C Gibberellin C-20 oxidase 2%2C GA 20-oxidase 2%2C Protein semidwarf-1%2C semi-dwarf1;Note=Similar to GA C20oxidase2.;Transcript_evidence=CT834906 (DDBJ%2C Best hit);ORF_evidence=B6F2D9 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);Oryzabase=470;TENOR=Os01t0883800-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	38382385	38382386	.	+	.	Parent=Os01t0883800-01
Chr01	irgsp1_rep	CDS	38382387	38382758	.	+	0	Parent=Os01t0883800-01
Chr01	irgsp1_rep	CDS	38383141	38383446	.	+	0	Parent=Os01t0883800-01
Chr01	irgsp1_rep	CDS	38384918	38385208	.	+	0	Parent=Os01t0883800-01
Chr01	irgsp1_rep	three_prime_UTR	38385209	38385469	.	+	.	Parent=Os01t0883800-01
Chr01	irgsp1_rep	mRNA	38382466	38385208	.	+	.	ID=Os01t0883800-02;Name=Os01t0883800-02;Locus_id=Os01g0883800;RAP-DB Gene Symbol Synonym(s)=20ox2%2C C20OX2%2C GA20%2C GA20ox-2%2C Os20ox2%2C OsGA20ox-2%2C OsGA20ox2%2C SD1%2C SD1-in%2C SD1-ja%2C Sd-1%2C d47%2C d49%2C sd-1%2C sd1%2C "sd1 (d47%2C sd1-d%2C sd1-1)"%2C sd1-1%2C sd1-2%2C sd1-3%2C sd1-4;RAP-DB Gene Name Synonym(s)=Calrose76(sd1-3)%2C GA 20-oxidase 2%2C GA C20oxidase2%2C Gibberellin 20 oxidase 2%2C Gibberellin 20-oxidase 2%2C Gibberellin C-20 oxidase 2%2C Jikkoku(sd1-2)%2C Protein semidwarf-1%2C SEMIDWARF 1%2C Semidwarf 1%2C Semidwarf 1-1%2C Semidwarf 1-3%2C Semidwarf 1-4%2C dee-geo-woo-gen dwarf%2C gibberrellin (GA) 20-oxidase%2C green revolution gene%2C reimei dwarf%2C rice GA 20-oxidase2%2C semidwarf-1;CGSNL Gene Symbol=SD1;CGSNL Gene Name=SEMIDWARF 1;Oryzabase Gene Symbol Synonym(s)=sd1%2C sd1 (d47%2C sd1-d%2C sd1-1)%2C d49(sd1-r)%2C d47%2C C20OX2%2C OsGA20ox-2%2C OsGA20ox2%2C GA20ox-2%2C GA20OX2%2C GA20ox2%2C sd-1%2C SD1-ja%2C SD1-in%2C sd1-2%2C Sd-1%2C GA20%2C 20ox2%2C Os20ox2;Oryzabase Gene Name Synonym(s)=dee-geo-woo-gen dwarf(sd1-d)%2C green revolution gene%2C semidwarf-1%2C GA C20oxidase2%2C semidwarf-1%2C reimei dwarf(sd1-r)%2C Calrose76(sd1-3)%2C Jikkoku(sd1-2). rice GA 20-oxidase2%2C GA 20-oxidase 2%2C Gibberellin 20 oxidase 2%2C Gibberellin C-20 oxidase 2%2C GA 20-oxidase 2%2C Protein semidwarf-1%2C semi-dwarf1;Note=GA 20-oxidase2%2C GA metabolism;Transcript_evidence=AB077025 (DDBJ);ORF_evidence=Q0JH50 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Isopenicillin N synthase (IPR002283),Oxoglutarate/iron-dependent oxygenase (IPR005123);Manual Curation=May 14%2C 2009;Literature_PMID=11961544,15075394;Oryzabase=470;TENOR=Os01t0883800-02
Chr01	irgsp1_rep	CDS	38382466	38383022	.	+	0	Parent=Os01t0883800-02
Chr01	irgsp1_rep	CDS	38383125	38383446	.	+	1	Parent=Os01t0883800-02
Chr01	irgsp1_rep	CDS	38384918	38385208	.	+	0	Parent=Os01t0883800-02
Chr01	irgsp1_rep	mRNA	38382586	38383358	.	-	.	ID=Os01t0883850-00;Name=Os01t0883850-00;Locus_id=Os01g0883850;Note=Hypothetical protein.;Transcript_evidence=DQ334868 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0883850-00
Chr01	irgsp1_rep	five_prime_UTR	38383049	38383358	.	-	.	Parent=Os01t0883850-00
Chr01	irgsp1_rep	CDS	38382586	38383048	.	-	0	Parent=Os01t0883850-00
Chr01	irgsp1_rep	mRNA	38386425	38391652	.	-	.	ID=Os01t0883900-01;Name=Os01t0883900-01;Locus_id=Os01g0883900;Note=Protein of unknown function DUF248%2C methyltransferase putative family protein.;Transcript_evidence=AK119636 (DDBJ%2C Best hit);ORF_evidence=NP_201208.2 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Protein of unknown function DUF248%2C methyltransferase putative (IPR004159);NIAS_FLcDNA=002-130-F03;Oryzabase=22702;Expression=AK119636;TENOR=Os01t0883900-01;KEGG=Os01t0883900-01
Chr01	irgsp1_rep	five_prime_UTR	38391581	38391652	.	-	.	Parent=Os01t0883900-01
Chr01	irgsp1_rep	five_prime_UTR	38391012	38391077	.	-	.	Parent=Os01t0883900-01
Chr01	irgsp1_rep	CDS	38389983	38391011	.	-	0	Parent=Os01t0883900-01
Chr01	irgsp1_rep	CDS	38389731	38389880	.	-	0	Parent=Os01t0883900-01
Chr01	irgsp1_rep	CDS	38388861	38389131	.	-	0	Parent=Os01t0883900-01
Chr01	irgsp1_rep	CDS	38388666	38388776	.	-	2	Parent=Os01t0883900-01
Chr01	irgsp1_rep	CDS	38388022	38388196	.	-	2	Parent=Os01t0883900-01
Chr01	irgsp1_rep	CDS	38387660	38387932	.	-	1	Parent=Os01t0883900-01
Chr01	irgsp1_rep	CDS	38387090	38387284	.	-	1	Parent=Os01t0883900-01
Chr01	irgsp1_rep	CDS	38386692	38386908	.	-	1	Parent=Os01t0883900-01
Chr01	irgsp1_rep	three_prime_UTR	38386425	38386691	.	-	.	Parent=Os01t0883900-01
Chr01	irgsp1_rep	mRNA	38386429	38391315	.	-	.	ID=Os01t0883900-02;Name=Os01t0883900-02;Locus_id=Os01g0883900;Note=Protein of unknown function DUF248%2C methyltransferase putative family protein.;Transcript_evidence=AK100713 (DDBJ%2C Best hit);ORF_evidence=NP_201208.2 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Protein of unknown function DUF248%2C methyltransferase putative (IPR004159);NIAS_FLcDNA=J023115H24;Oryzabase=22702;Expression=AK100713;TENOR=Os01t0883900-02;KEGG=Os01t0883900-02
Chr01	irgsp1_rep	five_prime_UTR	38391012	38391315	.	-	.	Parent=Os01t0883900-02
Chr01	irgsp1_rep	CDS	38389983	38391011	.	-	0	Parent=Os01t0883900-02
Chr01	irgsp1_rep	CDS	38389731	38389880	.	-	0	Parent=Os01t0883900-02
Chr01	irgsp1_rep	CDS	38388861	38389131	.	-	0	Parent=Os01t0883900-02
Chr01	irgsp1_rep	CDS	38388666	38388776	.	-	2	Parent=Os01t0883900-02
Chr01	irgsp1_rep	CDS	38388022	38388196	.	-	2	Parent=Os01t0883900-02
Chr01	irgsp1_rep	CDS	38387660	38387932	.	-	1	Parent=Os01t0883900-02
Chr01	irgsp1_rep	CDS	38387090	38387284	.	-	1	Parent=Os01t0883900-02
Chr01	irgsp1_rep	CDS	38386692	38386908	.	-	1	Parent=Os01t0883900-02
Chr01	irgsp1_rep	three_prime_UTR	38386429	38386691	.	-	.	Parent=Os01t0883900-02
Chr01	irgsp1_rep	mRNA	38387088	38390147	.	+	.	ID=Os01t0884050-00;Name=Os01t0884050-00;Locus_id=Os01g0884050;Note=Non-protein coding transcript.;Transcript_evidence=tplb0026p23 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os01t0884050-00
Chr01	irgsp1_rep	exon	38387088	38387262	.	+	.	Parent=Os01t0884050-00
Chr01	irgsp1_rep	exon	38387640	38387904	.	+	.	Parent=Os01t0884050-00
Chr01	irgsp1_rep	exon	38388004	38388227	.	+	.	Parent=Os01t0884050-00
Chr01	irgsp1_rep	exon	38388694	38388788	.	+	.	Parent=Os01t0884050-00
Chr01	irgsp1_rep	exon	38388887	38389156	.	+	.	Parent=Os01t0884050-00
Chr01	irgsp1_rep	exon	38389758	38389871	.	+	.	Parent=Os01t0884050-00
Chr01	irgsp1_rep	exon	38389943	38390147	.	+	.	Parent=Os01t0884050-00
Chr01	irgsp1_rep	mRNA	38397406	38398976	.	+	.	ID=Os01t0884200-01;Name=Os01t0884200-01;Locus_id=Os01g0884200;Note=Hypothetical gene.;Transcript_evidence=AK064579 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-112-E11;Oryzabase=22697;Expression=AK064579;TENOR=Os01t0884200-01;KEGG=Os01t0884200-01
Chr01	irgsp1_rep	five_prime_UTR	38397406	38398627	.	+	.	Parent=Os01t0884200-01
Chr01	irgsp1_rep	CDS	38398628	38398840	.	+	0	Parent=Os01t0884200-01
Chr01	irgsp1_rep	three_prime_UTR	38398841	38398976	.	+	.	Parent=Os01t0884200-01
Chr01	irgsp1_rep	mRNA	38398996	38401481	.	-	.	ID=Os01t0884300-01;Name=Os01t0884300-01;Locus_id=Os01g0884300;RAP-DB Gene Symbol Synonym(s)=OsNAC6;RAP-DB Gene Name Synonym(s)=NAC transcription factor 6;CGSNL Gene Symbol=NAC6;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsNAC6%2C ONAC048%2C NAC48%2C SNAC2%2C SNAC2/OsNAC6%2C OsNAC6/ONAC048%2C OsSNAC2%2C SNAC-2%2C OsSNAC-2;Oryzabase Gene Name Synonym(s)=NAC 6%2C OsNac gene-6%2C O. sativa gene with the NAC domain 6%2C OsNAC6 protein%2C NAC domain-containing protein 48%2C stress-responsive NAC transcription factor SNAC2%2C stress-responsive NAC transcription factor 2;Note=NAC transcription factor%2C Drought tolerance%2C Response to abiotic and biotic stresses;Transcript_evidence=AK068392;ORF_evidence=Q7F2L3;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=NAC domain superfamily (IPR036093),NAC domain (IPR003441);NIAS_FLcDNA=J013149P14;Manual Curation=May 15%2C 2020;Literature_PMID=27892643,20632034,17587305;Oryzabase=2263;Expression=AK068392;TENOR=Os01t0884300-01;KEGG=Os01t0884300-01;Subcellular location=nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	38401373	38401481	.	-	.	Parent=Os01t0884300-01
Chr01	irgsp1_rep	CDS	38401207	38401372	.	-	0	Parent=Os01t0884300-01
Chr01	irgsp1_rep	CDS	38400833	38401107	.	-	2	Parent=Os01t0884300-01
Chr01	irgsp1_rep	CDS	38399501	38399971	.	-	0	Parent=Os01t0884300-01
Chr01	irgsp1_rep	three_prime_UTR	38398996	38399500	.	-	.	Parent=Os01t0884300-01
Chr01	irgsp1_rep	mRNA	38400848	38401417	.	+	.	ID=Os01t0884350-00;Name=Os01t0884350-00;Locus_id=Os01g0884350;Note=Hypothetical protein.;Transcript_evidence=FP093663 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0884350-00
Chr01	irgsp1_rep	five_prime_UTR	38400848	38401162	.	+	.	Parent=Os01t0884350-00
Chr01	irgsp1_rep	CDS	38401163	38401417	.	+	0	Parent=Os01t0884350-00
Chr01	irgsp1_rep	mRNA	38409242	38413057	.	+	.	ID=Os01t0884400-01;Name=Os01t0884400-01;Locus_id=Os01g0884400;Oryzabase Gene Symbol Synonym(s)=OsPUB16;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 16%2C U-box protein 16;Note=Armadillo domain containing protein.;Transcript_evidence=AK072566 (DDBJ%2C Best hit);ORF_evidence=B9EUZ0 (UniProt);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),U box domain (IPR003613),Armadillo-like helical (IPR011989),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023134O09;Oryzabase=17808;TENOR=Os01t0884400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	38409242	38409242	.	+	.	Parent=Os01t0884400-01
Chr01	irgsp1_rep	CDS	38409243	38409365	.	+	0	Parent=Os01t0884400-01
Chr01	irgsp1_rep	CDS	38410135	38410407	.	+	0	Parent=Os01t0884400-01
Chr01	irgsp1_rep	CDS	38410558	38410659	.	+	0	Parent=Os01t0884400-01
Chr01	irgsp1_rep	CDS	38410746	38412704	.	+	0	Parent=Os01t0884400-01
Chr01	irgsp1_rep	CDS	38412791	38412850	.	+	0	Parent=Os01t0884400-01
Chr01	irgsp1_rep	three_prime_UTR	38412851	38413057	.	+	.	Parent=Os01t0884400-01
Chr01	irgsp1_rep	mRNA	38412593	38412705	.	-	.	ID=Os01t0884450-00;Name=Os01t0884450-00;Locus_id=Os01g0884450;Note=Non-protein coding transcript.;Transcript_evidence=BT084688 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0884450-00
Chr01	irgsp1_rep	exon	38412593	38412705	.	-	.	Parent=Os01t0884450-00
Chr01	irgsp1_rep	mRNA	38413181	38424557	.	-	.	ID=Os01t0884500-01;Name=Os01t0884500-01;Locus_id=Os01g0884500;Note=Plus-3 domain containing protein.;Transcript_evidence=AK069155 (DDBJ%2C Best hit);ORF_evidence=B8A7B5 (UniProt);GO=Biological Process: transcription initiation%2C DNA-dependent (GO:0006352),Biological Process: histone modification (GO:0016570),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),SWIB/MDM2 domain (IPR003121),GYF (IPR003169),Plus-3 (IPR004343),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J023004L23;Expression=AK069155;TENOR=Os01t0884500-01;KEGG=Os01t0884500-01
Chr01	irgsp1_rep	five_prime_UTR	38424361	38424557	.	-	.	Parent=Os01t0884500-01
Chr01	irgsp1_rep	CDS	38424266	38424360	.	-	0	Parent=Os01t0884500-01
Chr01	irgsp1_rep	CDS	38423900	38423979	.	-	1	Parent=Os01t0884500-01
Chr01	irgsp1_rep	CDS	38423209	38423408	.	-	2	Parent=Os01t0884500-01
Chr01	irgsp1_rep	CDS	38421774	38422635	.	-	0	Parent=Os01t0884500-01
Chr01	irgsp1_rep	CDS	38421381	38421502	.	-	2	Parent=Os01t0884500-01
Chr01	irgsp1_rep	CDS	38420875	38420934	.	-	0	Parent=Os01t0884500-01
Chr01	irgsp1_rep	CDS	38420271	38420321	.	-	0	Parent=Os01t0884500-01
Chr01	irgsp1_rep	CDS	38419667	38419739	.	-	0	Parent=Os01t0884500-01
Chr01	irgsp1_rep	CDS	38419289	38419441	.	-	2	Parent=Os01t0884500-01
Chr01	irgsp1_rep	CDS	38416764	38416817	.	-	2	Parent=Os01t0884500-01
Chr01	irgsp1_rep	CDS	38416485	38416541	.	-	2	Parent=Os01t0884500-01
Chr01	irgsp1_rep	CDS	38416112	38416165	.	-	2	Parent=Os01t0884500-01
Chr01	irgsp1_rep	CDS	38415550	38415606	.	-	2	Parent=Os01t0884500-01
Chr01	irgsp1_rep	CDS	38415384	38415440	.	-	2	Parent=Os01t0884500-01
Chr01	irgsp1_rep	CDS	38415217	38415273	.	-	2	Parent=Os01t0884500-01
Chr01	irgsp1_rep	CDS	38415050	38415106	.	-	2	Parent=Os01t0884500-01
Chr01	irgsp1_rep	CDS	38414222	38414293	.	-	2	Parent=Os01t0884500-01
Chr01	irgsp1_rep	CDS	38413481	38413998	.	-	2	Parent=Os01t0884500-01
Chr01	irgsp1_rep	three_prime_UTR	38413181	38413480	.	-	.	Parent=Os01t0884500-01
Chr01	irgsp1_rep	mRNA	38419314	38424366	.	+	.	ID=Os01t0884600-00;Name=Os01t0884600-00;Locus_id=Os01g0884600;Note=Hypothetical protein.;Transcript_evidence=tplb0059e14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0884600-00
Chr01	irgsp1_rep	five_prime_UTR	38419314	38419432	.	+	.	Parent=Os01t0884600-00
Chr01	irgsp1_rep	five_prime_UTR	38419664	38419820	.	+	.	Parent=Os01t0884600-00
Chr01	irgsp1_rep	five_prime_UTR	38421359	38421504	.	+	.	Parent=Os01t0884600-00
Chr01	irgsp1_rep	five_prime_UTR	38421766	38422177	.	+	.	Parent=Os01t0884600-00
Chr01	irgsp1_rep	CDS	38422178	38422459	.	+	0	Parent=Os01t0884600-00
Chr01	irgsp1_rep	three_prime_UTR	38422460	38422654	.	+	.	Parent=Os01t0884600-00
Chr01	irgsp1_rep	three_prime_UTR	38423231	38423400	.	+	.	Parent=Os01t0884600-00
Chr01	irgsp1_rep	three_prime_UTR	38423892	38423975	.	+	.	Parent=Os01t0884600-00
Chr01	irgsp1_rep	three_prime_UTR	38424261	38424366	.	+	.	Parent=Os01t0884600-00
Chr01	irgsp1_rep	mRNA	38432707	38433693	.	-	.	ID=Os01t0884700-00;Name=Os01t0884700-00;Locus_id=Os01g0884700;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0002i01 (Wheat FLcDNA);ORF_evidence=A3A0A4 (UniProt);TENOR=Os01t0884700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	38432707	38433693	.	-	0	Parent=Os01t0884700-00
Chr01	irgsp1_rep	mRNA	38432750	38437074	.	+	.	ID=Os01t0884800-00;Name=Os01t0884800-00;Locus_id=Os01g0884800;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK374516 (DDBJ);ORF_evidence=NP_001172681.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os01t0884800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	38432750	38433139	.	+	0	Parent=Os01t0884800-00
Chr01	irgsp1_rep	CDS	38435503	38437074	.	+	0	Parent=Os01t0884800-00
Chr01	irgsp1_rep	mRNA	38436060	38437082	.	-	.	ID=Os01t0884850-00;Name=Os01t0884850-00;Locus_id=Os01g0884850;Note=Hypothetical protein.;Transcript_evidence=BT085496 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0884850-00
Chr01	irgsp1_rep	five_prime_UTR	38437033	38437082	.	-	.	Parent=Os01t0884850-00
Chr01	irgsp1_rep	CDS	38436060	38437032	.	-	0	Parent=Os01t0884850-00
Chr01	irgsp1_rep	mRNA	38437193	38438811	.	-	.	ID=Os01t0884900-01;Name=Os01t0884900-01;Locus_id=Os01g0884900;Note=Similar to DNA glycosylase.;Transcript_evidence=AK063875 (DDBJ%2C Best hit);ORF_evidence=XP_003057876.1 (RefSeq);InterPro=SNARE associated Golgi protein (IPR015414);NIAS_FLcDNA=001-122-F02;TENOR=Os01t0884900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	38438588	38438811	.	-	0	Parent=Os01t0884900-01
Chr01	irgsp1_rep	CDS	38438244	38438310	.	-	1	Parent=Os01t0884900-01
Chr01	irgsp1_rep	CDS	38437491	38437598	.	-	0	Parent=Os01t0884900-01
Chr01	irgsp1_rep	CDS	38437314	38437340	.	-	0	Parent=Os01t0884900-01
Chr01	irgsp1_rep	three_prime_UTR	38437193	38437313	.	-	.	Parent=Os01t0884900-01
Chr01	irgsp1_rep	mRNA	38443627	38446419	.	+	.	ID=Os01t0885000-01;Name=Os01t0885000-01;Locus_id=Os01g0885000;Oryzabase Gene Name Synonym(s)=cytoChrome c;Note=Similar to CytoChrome c.;Transcript_evidence=AK121662 (DDBJ%2C Best hit);ORF_evidence=B6T4T7 (UniProt);GO=Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome c%2C class IA/ IB (IPR002327),CytoChrome c%2C class I (IPR003088),CytoChrome c domain (IPR009056);NIAS_FLcDNA=J033064H20;Oryzabase=21768;Expression=AK121662;TENOR=Os01t0885000-01;KEGG=Os01t0885000-01
Chr01	irgsp1_rep	five_prime_UTR	38443627	38443698	.	+	.	Parent=Os01t0885000-01
Chr01	irgsp1_rep	CDS	38443699	38443810	.	+	0	Parent=Os01t0885000-01
Chr01	irgsp1_rep	CDS	38444908	38445041	.	+	2	Parent=Os01t0885000-01
Chr01	irgsp1_rep	CDS	38446043	38446132	.	+	0	Parent=Os01t0885000-01
Chr01	irgsp1_rep	three_prime_UTR	38446133	38446419	.	+	.	Parent=Os01t0885000-01
Chr01	irgsp1_rep	mRNA	38445016	38446311	.	+	.	ID=Os01t0885000-02;Name=Os01t0885000-02;Locus_id=Os01g0885000;Oryzabase Gene Name Synonym(s)=cytoChrome c;Note=Similar to CytoChrome c.;Transcript_evidence=AK060676 (DDBJ%2C Best hit);ORF_evidence=P00071 (UniProt);GO=Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome c%2C class IA/ IB (IPR002327),CytoChrome c domain (IPR009056);NIAS_FLcDNA=001-029-B03;Oryzabase=21768;Expression=AK060676;TENOR=Os01t0885000-02;KEGG=Os01t0885000-02
Chr01	irgsp1_rep	five_prime_UTR	38445016	38445017	.	+	.	Parent=Os01t0885000-02
Chr01	irgsp1_rep	CDS	38445018	38445041	.	+	0	Parent=Os01t0885000-02
Chr01	irgsp1_rep	CDS	38446043	38446132	.	+	0	Parent=Os01t0885000-02
Chr01	irgsp1_rep	three_prime_UTR	38446133	38446311	.	+	.	Parent=Os01t0885000-02
Chr01	irgsp1_rep	mRNA	38448148	38450486	.	-	.	ID=Os01t0885200-01;Name=Os01t0885200-01;Locus_id=Os01g0885200;Note=Uncharacterised conserved protein UCP031277 domain containing protein.;Transcript_evidence=AK100276 (DDBJ%2C Best hit);ORF_evidence=A2WXP6 (UniProt);InterPro=Uncharacterised conserved protein UCP031277 (IPR016971);NIAS_FLcDNA=J023073G17;Expression=AK100276;TENOR=Os01t0885200-01;KEGG=Os01t0885200-01
Chr01	irgsp1_rep	five_prime_UTR	38449589	38450486	.	-	.	Parent=Os01t0885200-01
Chr01	irgsp1_rep	CDS	38448395	38449588	.	-	0	Parent=Os01t0885200-01
Chr01	irgsp1_rep	three_prime_UTR	38448148	38448394	.	-	.	Parent=Os01t0885200-01
Chr01	irgsp1_rep	mRNA	38448294	38449287	.	-	.	ID=Os01t0885200-02;Name=Os01t0885200-02;Locus_id=Os01g0885200;Note=Hypothetical conserved gene.;Transcript_evidence=AK059113 (DDBJ%2C Best hit);ORF_evidence=A2WXP6 (UniProt);InterPro=Uncharacterised conserved protein UCP031277 (IPR016971);NIAS_FLcDNA=001-022-E04;Expression=AK059113;TENOR=Os01t0885200-02;KEGG=Os01t0885200-02
Chr01	irgsp1_rep	five_prime_UTR	38449286	38449287	.	-	.	Parent=Os01t0885200-02
Chr01	irgsp1_rep	CDS	38448395	38449285	.	-	0	Parent=Os01t0885200-02
Chr01	irgsp1_rep	three_prime_UTR	38448294	38448394	.	-	.	Parent=Os01t0885200-02
Chr01	irgsp1_rep	mRNA	38454843	38460529	.	-	.	ID=Os01t0885300-01;Name=Os01t0885300-01;Locus_id=Os01g0885300;Note=Conserved hypothetical protein.;Transcript_evidence=AK102068 (DDBJ%2C Best hit);ORF_evidence=Q5N8H4 (UniProt);NIAS_FLcDNA=J033082G03;Expression=AK102068;TENOR=Os01t0885300-01;KEGG=Os01t0885300-01
Chr01	irgsp1_rep	five_prime_UTR	38460094	38460529	.	-	.	Parent=Os01t0885300-01
Chr01	irgsp1_rep	five_prime_UTR	38458428	38458476	.	-	.	Parent=Os01t0885300-01
Chr01	irgsp1_rep	CDS	38458353	38458427	.	-	0	Parent=Os01t0885300-01
Chr01	irgsp1_rep	CDS	38457442	38458134	.	-	0	Parent=Os01t0885300-01
Chr01	irgsp1_rep	CDS	38456701	38457207	.	-	0	Parent=Os01t0885300-01
Chr01	irgsp1_rep	CDS	38456503	38456564	.	-	0	Parent=Os01t0885300-01
Chr01	irgsp1_rep	CDS	38456312	38456407	.	-	1	Parent=Os01t0885300-01
Chr01	irgsp1_rep	CDS	38456129	38456216	.	-	1	Parent=Os01t0885300-01
Chr01	irgsp1_rep	CDS	38455577	38455657	.	-	0	Parent=Os01t0885300-01
Chr01	irgsp1_rep	CDS	38455335	38455426	.	-	0	Parent=Os01t0885300-01
Chr01	irgsp1_rep	CDS	38455226	38455253	.	-	1	Parent=Os01t0885300-01
Chr01	irgsp1_rep	three_prime_UTR	38454843	38455225	.	-	.	Parent=Os01t0885300-01
Chr01	irgsp1_rep	mRNA	38454841	38457518	.	-	.	ID=Os01t0885300-02;Name=Os01t0885300-02;Locus_id=Os01g0885300;Note=Hypothetical conserved gene.;Transcript_evidence=AK062009 (DDBJ%2C Best hit);ORF_evidence=Q5N8H4 (UniProt);NIAS_FLcDNA=001-043-E03;Expression=AK062009;TENOR=Os01t0885300-02;KEGG=Os01t0885300-02
Chr01	irgsp1_rep	five_prime_UTR	38457517	38457518	.	-	.	Parent=Os01t0885300-02
Chr01	irgsp1_rep	CDS	38457442	38457516	.	-	0	Parent=Os01t0885300-02
Chr01	irgsp1_rep	CDS	38456701	38457207	.	-	0	Parent=Os01t0885300-02
Chr01	irgsp1_rep	CDS	38456503	38456564	.	-	0	Parent=Os01t0885300-02
Chr01	irgsp1_rep	CDS	38456312	38456407	.	-	1	Parent=Os01t0885300-02
Chr01	irgsp1_rep	CDS	38456129	38456216	.	-	1	Parent=Os01t0885300-02
Chr01	irgsp1_rep	CDS	38455577	38455657	.	-	0	Parent=Os01t0885300-02
Chr01	irgsp1_rep	CDS	38455335	38455426	.	-	0	Parent=Os01t0885300-02
Chr01	irgsp1_rep	CDS	38455226	38455253	.	-	1	Parent=Os01t0885300-02
Chr01	irgsp1_rep	three_prime_UTR	38454841	38455225	.	-	.	Parent=Os01t0885300-02
Chr01	irgsp1_rep	mRNA	38454841	38460262	.	-	.	ID=Os01t0885300-03;Name=Os01t0885300-03;Locus_id=Os01g0885300;Note=Conserved hypothetical protein.;Transcript_evidence=AK067070 (DDBJ%2C Best hit);ORF_evidence=Q5N8H4 (UniProt);NIAS_FLcDNA=J013091A07;TENOR=Os01t0885300-03
Chr01	irgsp1_rep	five_prime_UTR	38460094	38460262	.	-	.	Parent=Os01t0885300-03
Chr01	irgsp1_rep	five_prime_UTR	38458428	38458476	.	-	.	Parent=Os01t0885300-03
Chr01	irgsp1_rep	CDS	38458353	38458427	.	-	0	Parent=Os01t0885300-03
Chr01	irgsp1_rep	CDS	38457442	38458134	.	-	0	Parent=Os01t0885300-03
Chr01	irgsp1_rep	CDS	38456701	38457207	.	-	0	Parent=Os01t0885300-03
Chr01	irgsp1_rep	CDS	38456503	38456564	.	-	0	Parent=Os01t0885300-03
Chr01	irgsp1_rep	CDS	38456312	38456407	.	-	1	Parent=Os01t0885300-03
Chr01	irgsp1_rep	CDS	38456129	38456216	.	-	1	Parent=Os01t0885300-03
Chr01	irgsp1_rep	CDS	38455577	38455657	.	-	0	Parent=Os01t0885300-03
Chr01	irgsp1_rep	CDS	38455335	38455426	.	-	0	Parent=Os01t0885300-03
Chr01	irgsp1_rep	CDS	38455226	38455253	.	-	1	Parent=Os01t0885300-03
Chr01	irgsp1_rep	three_prime_UTR	38454841	38455225	.	-	.	Parent=Os01t0885300-03
Chr01	irgsp1_rep	mRNA	38472228	38475218	.	-	.	ID=Os01t0885500-01;Name=Os01t0885500-01;Locus_id=Os01g0885500;Note=Hypothetical conserved gene.;Transcript_evidence=AK071788 (DDBJ%2C Best hit),AK106609 (DDBJ%2C Best hit);ORF_evidence=Q5N8H2 (UniProt);NIAS_FLcDNA=J023108N07,002-112-F06;Expression=AK071788;TENOR=Os01t0885500-01;KEGG=Os01t0885500-01
Chr01	irgsp1_rep	five_prime_UTR	38475197	38475218	.	-	.	Parent=Os01t0885500-01
Chr01	irgsp1_rep	CDS	38474878	38475196	.	-	0	Parent=Os01t0885500-01
Chr01	irgsp1_rep	CDS	38474458	38474687	.	-	2	Parent=Os01t0885500-01
Chr01	irgsp1_rep	CDS	38472403	38473008	.	-	0	Parent=Os01t0885500-01
Chr01	irgsp1_rep	three_prime_UTR	38472228	38472402	.	-	.	Parent=Os01t0885500-01
Chr01	irgsp1_rep	mRNA	38469634	38472424	.	-	.	ID=Os01t0885500-03;Name=Os01t0885500-03;Locus_id=Os01g0885500;Note=Hypothetical protein.;Transcript_evidence=AK064424 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-110-C04;TENOR=Os01t0885500-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	38472384	38472424	.	-	.	Parent=Os01t0885500-03
Chr01	irgsp1_rep	five_prime_UTR	38471888	38472163	.	-	.	Parent=Os01t0885500-03
Chr01	irgsp1_rep	five_prime_UTR	38471636	38471772	.	-	.	Parent=Os01t0885500-03
Chr01	irgsp1_rep	five_prime_UTR	38470473	38471106	.	-	.	Parent=Os01t0885500-03
Chr01	irgsp1_rep	CDS	38469906	38470472	.	-	0	Parent=Os01t0885500-03
Chr01	irgsp1_rep	three_prime_UTR	38469634	38469905	.	-	.	Parent=Os01t0885500-03
Chr01	irgsp1_rep	mRNA	38475647	38480677	.	+	.	ID=Os01t0885600-01;Name=Os01t0885600-01;Locus_id=Os01g0885600;Note=Alpha/beta hydrolase fold-1 domain containing protein.;Transcript_evidence=AK059523 (DDBJ%2C Best hit);ORF_evidence=NP_192741.1 (RefSeq);NIAS_FLcDNA=001-029-C09;Expression=AK059523;TENOR=Os01t0885600-01;KEGG=Os01t0885600-01
Chr01	irgsp1_rep	five_prime_UTR	38475647	38475696	.	+	.	Parent=Os01t0885600-01
Chr01	irgsp1_rep	CDS	38475697	38475831	.	+	0	Parent=Os01t0885600-01
Chr01	irgsp1_rep	CDS	38477340	38477483	.	+	0	Parent=Os01t0885600-01
Chr01	irgsp1_rep	CDS	38477560	38477586	.	+	0	Parent=Os01t0885600-01
Chr01	irgsp1_rep	CDS	38477711	38477801	.	+	0	Parent=Os01t0885600-01
Chr01	irgsp1_rep	CDS	38477965	38478008	.	+	2	Parent=Os01t0885600-01
Chr01	irgsp1_rep	CDS	38478093	38478191	.	+	0	Parent=Os01t0885600-01
Chr01	irgsp1_rep	CDS	38478974	38479031	.	+	0	Parent=Os01t0885600-01
Chr01	irgsp1_rep	CDS	38479133	38479185	.	+	2	Parent=Os01t0885600-01
Chr01	irgsp1_rep	CDS	38479286	38479387	.	+	0	Parent=Os01t0885600-01
Chr01	irgsp1_rep	CDS	38479499	38479564	.	+	0	Parent=Os01t0885600-01
Chr01	irgsp1_rep	CDS	38479701	38479825	.	+	0	Parent=Os01t0885600-01
Chr01	irgsp1_rep	CDS	38479916	38480087	.	+	1	Parent=Os01t0885600-01
Chr01	irgsp1_rep	CDS	38480329	38480415	.	+	0	Parent=Os01t0885600-01
Chr01	irgsp1_rep	three_prime_UTR	38480416	38480677	.	+	.	Parent=Os01t0885600-01
Chr01	irgsp1_rep	mRNA	38481235	38484005	.	+	.	ID=Os01t0885700-01;Name=Os01t0885700-01;Locus_id=Os01g0885700;Note=Protein kinase-like domain containing protein.;Transcript_evidence=AK110253 (DDBJ%2C Best hit);ORF_evidence=Q2QWY4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),S-receptor-like serine/threonine-protein kinase (IPR024171);NIAS_FLcDNA=002-162-H08;Expression=AK110253;TENOR=Os01t0885700-01;KEGG=Os01t0885700-01
Chr01	irgsp1_rep	five_prime_UTR	38481235	38481429	.	+	.	Parent=Os01t0885700-01
Chr01	irgsp1_rep	CDS	38481430	38483910	.	+	0	Parent=Os01t0885700-01
Chr01	irgsp1_rep	three_prime_UTR	38483911	38484005	.	+	.	Parent=Os01t0885700-01
Chr01	irgsp1_rep	mRNA	38489459	38490169	.	+	.	ID=Os01t0885900-00;Name=Os01t0885900-00;Locus_id=Os01g0885900;CGSNL Gene Symbol=ERF17;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 17;Oryzabase Gene Symbol Synonym(s)=OsERF#017%2C OsERF017%2C OsERF17%2C AP2/EREBP#091%2C AP2/EREBP91;Oryzabase Gene Name Synonym(s)=ethylene response factor 17%2C APETALA2/ethylene-responsive element binding protein 91;Note=Similar to transcriptional factor TINY.;Transcript_evidence=EU954530 (DDBJ);ORF_evidence=NP_001147298.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);Oryzabase=10541;TENOR=Os01t0885900-00;KEGG=Os01t0885900-00
Chr01	irgsp1_rep	CDS	38489459	38490169	.	+	0	Parent=Os01t0885900-00
Chr01	irgsp1_rep	mRNA	38491273	38494120	.	-	.	ID=Os01t0886000-01;Name=Os01t0886000-01;Locus_id=Os01g0886000;Note=Protein of unknown function DUF179 family protein.;Transcript_evidence=AK106349 (DDBJ%2C Best hit);ORF_evidence=A2WXQ3 (UniProt);InterPro=Protein of unknown function DUF179 (IPR003774);NIAS_FLcDNA=002-101-H09;Oryzabase=22698;Expression=AK106349;TENOR=Os01t0886000-01;KEGG=Os01t0886000-01
Chr01	irgsp1_rep	five_prime_UTR	38494098	38494120	.	-	.	Parent=Os01t0886000-01
Chr01	irgsp1_rep	CDS	38493839	38494097	.	-	0	Parent=Os01t0886000-01
Chr01	irgsp1_rep	CDS	38492906	38493033	.	-	2	Parent=Os01t0886000-01
Chr01	irgsp1_rep	CDS	38491531	38492208	.	-	0	Parent=Os01t0886000-01
Chr01	irgsp1_rep	three_prime_UTR	38491273	38491530	.	-	.	Parent=Os01t0886000-01
Chr01	irgsp1_rep	mRNA	38500880	38505086	.	+	.	ID=Os01t0886200-01;Name=Os01t0886200-01;Locus_id=Os01g0886200;CGSNL Gene Symbol=MADS21;CGSNL Gene Name=MADS BOX GENE 21;Oryzabase Gene Symbol Synonym(s)=OsMADS21%2C RMADS207;Oryzabase Gene Name Synonym(s)=MADS box gene21%2C MADS-box transcription factor 21;Note=Similar to AGAMOUS homolog.;Transcript_evidence=AK070958 (DDBJ%2C Best hit);ORF_evidence=D3U2H6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box (IPR002100),Transcription factor%2C K-box (IPR002487);NIAS_FLcDNA=J023065L09;Oryzabase=3088;Expression=AK070958;TENOR=Os01t0886200-01;KEGG=Os01t0886200-01
Chr01	irgsp1_rep	five_prime_UTR	38500880	38501056	.	+	.	Parent=Os01t0886200-01
Chr01	irgsp1_rep	five_prime_UTR	38501844	38501861	.	+	.	Parent=Os01t0886200-01
Chr01	irgsp1_rep	CDS	38501862	38502046	.	+	0	Parent=Os01t0886200-01
Chr01	irgsp1_rep	CDS	38503119	38503200	.	+	1	Parent=Os01t0886200-01
Chr01	irgsp1_rep	CDS	38503393	38503457	.	+	0	Parent=Os01t0886200-01
Chr01	irgsp1_rep	CDS	38503655	38503754	.	+	1	Parent=Os01t0886200-01
Chr01	irgsp1_rep	CDS	38504041	38504082	.	+	0	Parent=Os01t0886200-01
Chr01	irgsp1_rep	CDS	38504227	38504268	.	+	0	Parent=Os01t0886200-01
Chr01	irgsp1_rep	CDS	38504392	38504673	.	+	0	Parent=Os01t0886200-01
Chr01	irgsp1_rep	three_prime_UTR	38504674	38505086	.	+	.	Parent=Os01t0886200-01
Chr01	irgsp1_rep	mRNA	38509123	38513467	.	+	.	ID=Os01t0886300-01;Name=Os01t0886300-01;Locus_id=Os01g0886300;Note=K Homology domain containing protein.;Transcript_evidence=AK065093 (DDBJ%2C Best hit);ORF_evidence=Q75GR5 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=K Homology (IPR004087);NIAS_FLcDNA=J013001M07;Expression=AK065093;TENOR=Os01t0886300-01;KEGG=Os01t0886300-01
Chr01	irgsp1_rep	five_prime_UTR	38509123	38509624	.	+	.	Parent=Os01t0886300-01
Chr01	irgsp1_rep	CDS	38509625	38509734	.	+	0	Parent=Os01t0886300-01
Chr01	irgsp1_rep	CDS	38510321	38510406	.	+	1	Parent=Os01t0886300-01
Chr01	irgsp1_rep	CDS	38511093	38511238	.	+	2	Parent=Os01t0886300-01
Chr01	irgsp1_rep	CDS	38511558	38511674	.	+	0	Parent=Os01t0886300-01
Chr01	irgsp1_rep	CDS	38511769	38511885	.	+	0	Parent=Os01t0886300-01
Chr01	irgsp1_rep	CDS	38512599	38512742	.	+	0	Parent=Os01t0886300-01
Chr01	irgsp1_rep	CDS	38512840	38512992	.	+	0	Parent=Os01t0886300-01
Chr01	irgsp1_rep	three_prime_UTR	38512993	38513467	.	+	.	Parent=Os01t0886300-01
Chr01	irgsp1_rep	mRNA	38509130	38510184	.	+	.	ID=Os01t0886300-02;Name=Os01t0886300-02;Locus_id=Os01g0886300;Note=Hypothetical gene.;Transcript_evidence=AK120493 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013119N04;Expression=AK120493;TENOR=Os01t0886300-02;KEGG=Os01t0886300-02
Chr01	irgsp1_rep	five_prime_UTR	38509130	38509130	.	+	.	Parent=Os01t0886300-02
Chr01	irgsp1_rep	CDS	38509131	38509472	.	+	0	Parent=Os01t0886300-02
Chr01	irgsp1_rep	three_prime_UTR	38509473	38509734	.	+	.	Parent=Os01t0886300-02
Chr01	irgsp1_rep	three_prime_UTR	38509858	38510184	.	+	.	Parent=Os01t0886300-02
Chr01	irgsp1_rep	mRNA	38509200	38513469	.	+	.	ID=Os01t0886300-03;Name=Os01t0886300-03;Locus_id=Os01g0886300;Note=K Homology domain containing protein.;Transcript_evidence=AK104828 (DDBJ%2C Best hit);ORF_evidence=Q75GR5 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=K Homology (IPR004087);NIAS_FLcDNA=001-041-G09;Expression=AK104828;TENOR=Os01t0886300-03;KEGG=Os01t0886300-03
Chr01	irgsp1_rep	five_prime_UTR	38509200	38509624	.	+	.	Parent=Os01t0886300-03
Chr01	irgsp1_rep	CDS	38509625	38509734	.	+	0	Parent=Os01t0886300-03
Chr01	irgsp1_rep	CDS	38510321	38510406	.	+	1	Parent=Os01t0886300-03
Chr01	irgsp1_rep	CDS	38511093	38511238	.	+	2	Parent=Os01t0886300-03
Chr01	irgsp1_rep	CDS	38511558	38511674	.	+	0	Parent=Os01t0886300-03
Chr01	irgsp1_rep	CDS	38511769	38511885	.	+	0	Parent=Os01t0886300-03
Chr01	irgsp1_rep	CDS	38512599	38512742	.	+	0	Parent=Os01t0886300-03
Chr01	irgsp1_rep	CDS	38512840	38512992	.	+	0	Parent=Os01t0886300-03
Chr01	irgsp1_rep	three_prime_UTR	38512993	38513469	.	+	.	Parent=Os01t0886300-03
Chr01	irgsp1_rep	mRNA	38515103	38516802	.	-	.	ID=Os01t0886350-01;Name=Os01t0886350-01;Locus_id=Os01g0886350;Note=Conserved hypothetical protein.;Transcript_evidence=AK240991 (DDBJ%2C Best hit);ORF_evidence=NP_001172683.1 (RefSeq);NIAS_FLcDNA=J065051N10;TENOR=Os01t0886350-01;KEGG=Os01t0886350-01
Chr01	irgsp1_rep	five_prime_UTR	38516215	38516802	.	-	.	Parent=Os01t0886350-01
Chr01	irgsp1_rep	CDS	38515861	38516214	.	-	0	Parent=Os01t0886350-01
Chr01	irgsp1_rep	three_prime_UTR	38515103	38515860	.	-	.	Parent=Os01t0886350-01
Chr01	irgsp1_rep	mRNA	38517646	38520243	.	-	.	ID=Os01t0886500-01;Name=Os01t0886500-01;Locus_id=Os01g0886500;Note=Similar to Ribosomal protein L37.;Transcript_evidence=AK242348 (DDBJ%2C Best hit);ORF_evidence=B6T670 (UniProt);NIAS_FLcDNA=J080013H03;TENOR=Os01t0886500-01;KEGG=Os01t0886500-01
Chr01	irgsp1_rep	five_prime_UTR	38520123	38520243	.	-	.	Parent=Os01t0886500-01
Chr01	irgsp1_rep	CDS	38519987	38520122	.	-	0	Parent=Os01t0886500-01
Chr01	irgsp1_rep	CDS	38518421	38518595	.	-	2	Parent=Os01t0886500-01
Chr01	irgsp1_rep	CDS	38518052	38518148	.	-	1	Parent=Os01t0886500-01
Chr01	irgsp1_rep	three_prime_UTR	38517646	38518051	.	-	.	Parent=Os01t0886500-01
Chr01	irgsp1_rep	mRNA	38520634	38526006	.	-	.	ID=Os01t0886600-01;Name=Os01t0886600-01;Locus_id=Os01g0886600;Oryzabase Gene Symbol Synonym(s)=OsSTA38;Note=Similar to CLP protease regulatory subunit CLPX precursor.;Transcript_evidence=AK070098 (DDBJ%2C Best hit);ORF_evidence=B7FAD8 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: unfolded protein binding (GO:0051082);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),Clp protease%2C ATP-binding subunit ClpX (IPR004487),ATPase%2C AAA-2 (IPR013093),Clp ATPase%2C C-terminal (IPR019489);NIAS_FLcDNA=J023040F17;Oryzabase=19345;Expression=AK070098;TENOR=Os01t0886600-01;KEGG=Os01t0886600-01
Chr01	irgsp1_rep	five_prime_UTR	38525939	38526006	.	-	.	Parent=Os01t0886600-01
Chr01	irgsp1_rep	CDS	38525642	38525938	.	-	0	Parent=Os01t0886600-01
Chr01	irgsp1_rep	CDS	38524444	38524505	.	-	0	Parent=Os01t0886600-01
Chr01	irgsp1_rep	CDS	38524257	38524357	.	-	1	Parent=Os01t0886600-01
Chr01	irgsp1_rep	CDS	38524046	38524127	.	-	2	Parent=Os01t0886600-01
Chr01	irgsp1_rep	CDS	38523921	38523969	.	-	1	Parent=Os01t0886600-01
Chr01	irgsp1_rep	CDS	38523716	38523790	.	-	0	Parent=Os01t0886600-01
Chr01	irgsp1_rep	CDS	38523571	38523648	.	-	0	Parent=Os01t0886600-01
Chr01	irgsp1_rep	CDS	38523070	38523126	.	-	0	Parent=Os01t0886600-01
Chr01	irgsp1_rep	CDS	38522457	38522527	.	-	0	Parent=Os01t0886600-01
Chr01	irgsp1_rep	CDS	38522228	38522327	.	-	1	Parent=Os01t0886600-01
Chr01	irgsp1_rep	CDS	38521989	38522093	.	-	0	Parent=Os01t0886600-01
Chr01	irgsp1_rep	CDS	38521726	38521788	.	-	0	Parent=Os01t0886600-01
Chr01	irgsp1_rep	CDS	38521517	38521639	.	-	0	Parent=Os01t0886600-01
Chr01	irgsp1_rep	CDS	38521288	38521446	.	-	0	Parent=Os01t0886600-01
Chr01	irgsp1_rep	CDS	38521019	38521087	.	-	0	Parent=Os01t0886600-01
Chr01	irgsp1_rep	three_prime_UTR	38520634	38521018	.	-	.	Parent=Os01t0886600-01
Chr01	irgsp1_rep	mRNA	38527705	38528419	.	+	.	ID=Os01t0886700-01;Name=Os01t0886700-01;Locus_id=Os01g0886700;Note=Conserved hypothetical protein.;Transcript_evidence=AK287901 (DDBJ%2C Best hit);ORF_evidence=Q8S0Q3 (UniProt);NIAS_FLcDNA=J065211C11;TENOR=Os01t0886700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	38527705	38527705	.	+	.	Parent=Os01t0886700-01
Chr01	irgsp1_rep	CDS	38527706	38528185	.	+	0	Parent=Os01t0886700-01
Chr01	irgsp1_rep	three_prime_UTR	38528186	38528419	.	+	.	Parent=Os01t0886700-01
Chr01	irgsp1_rep	mRNA	38534739	38539826	.	+	.	ID=Os01t0886900-00;Name=Os01t0886900-00;Locus_id=Os01g0886900;CGSNL Gene Symbol=RUS6A;CGSNL Gene Name=ROOT UV-B SENSITIVE 6A;Oryzabase Gene Symbol Synonym(s)=OsRUS6A;Note=Similar to EMB1879 (EMBRYO DEFECTIVE 1879).;Transcript_evidence=tplb0001d17 (Wheat FLcDNA);ORF_evidence=NP_568713.1 (RefSeq);InterPro=Protein of unknown function DUF647 (IPR006968);Oryzabase=21451;TENOR=Os01t0886900-00;KEGG=Os01t0886900-00
Chr01	irgsp1_rep	CDS	38534739	38535329	.	+	0	Parent=Os01t0886900-00
Chr01	irgsp1_rep	CDS	38536364	38536462	.	+	0	Parent=Os01t0886900-00
Chr01	irgsp1_rep	CDS	38536555	38536668	.	+	0	Parent=Os01t0886900-00
Chr01	irgsp1_rep	CDS	38537090	38537161	.	+	0	Parent=Os01t0886900-00
Chr01	irgsp1_rep	CDS	38537261	38537371	.	+	0	Parent=Os01t0886900-00
Chr01	irgsp1_rep	CDS	38537479	38537598	.	+	0	Parent=Os01t0886900-00
Chr01	irgsp1_rep	CDS	38538089	38538190	.	+	0	Parent=Os01t0886900-00
Chr01	irgsp1_rep	CDS	38538282	38538354	.	+	0	Parent=Os01t0886900-00
Chr01	irgsp1_rep	CDS	38538738	38538818	.	+	2	Parent=Os01t0886900-00
Chr01	irgsp1_rep	CDS	38538908	38538972	.	+	2	Parent=Os01t0886900-00
Chr01	irgsp1_rep	CDS	38539124	38539225	.	+	0	Parent=Os01t0886900-00
Chr01	irgsp1_rep	CDS	38539312	38539485	.	+	0	Parent=Os01t0886900-00
Chr01	irgsp1_rep	CDS	38539614	38539679	.	+	0	Parent=Os01t0886900-00
Chr01	irgsp1_rep	three_prime_UTR	38539680	38539826	.	+	.	Parent=Os01t0886900-00
Chr01	irgsp1_rep	mRNA	38544060	38545821	.	+	.	ID=Os01t0887100-01;Name=Os01t0887100-01;Locus_id=Os01g0887100;Oryzabase Gene Symbol Synonym(s)=OsCMS%2C CMS%2C OsIspD%2C IspD;Oryzabase Gene Name Synonym(s)=4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol synthase%2C CDP-ME synthase;Note=Similar to 4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol synthase.;Transcript_evidence=AK240934 (DDBJ%2C Best hit);ORF_evidence=A4PIB9 (UniProt);GO=Biological Process: isoprenoid biosynthetic process (GO:0008299),Molecular Function: catalytic activity (GO:0003824);InterPro=4-diphosphocytidyl-2C-methyl-D-erythritol synthase (IPR001228),4-diphosphocytidyl-2C-methyl-D-erythritol synthase%2C conserved site (IPR018294);NIAS_FLcDNA=J065041G17;Oryzabase=14684;TENOR=Os01t0887100-01;KEGG=Os01t0887100-01 (EC:2.7.7.60)
Chr01	irgsp1_rep	five_prime_UTR	38544060	38544061	.	+	.	Parent=Os01t0887100-01
Chr01	irgsp1_rep	CDS	38544062	38544095	.	+	0	Parent=Os01t0887100-01
Chr01	irgsp1_rep	CDS	38544237	38544319	.	+	2	Parent=Os01t0887100-01
Chr01	irgsp1_rep	CDS	38544423	38544500	.	+	0	Parent=Os01t0887100-01
Chr01	irgsp1_rep	CDS	38544874	38544942	.	+	0	Parent=Os01t0887100-01
Chr01	irgsp1_rep	CDS	38545107	38545175	.	+	0	Parent=Os01t0887100-01
Chr01	irgsp1_rep	CDS	38545261	38545307	.	+	0	Parent=Os01t0887100-01
Chr01	irgsp1_rep	CDS	38545397	38545487	.	+	1	Parent=Os01t0887100-01
Chr01	irgsp1_rep	CDS	38545580	38545633	.	+	0	Parent=Os01t0887100-01
Chr01	irgsp1_rep	three_prime_UTR	38545634	38545821	.	+	.	Parent=Os01t0887100-01
Chr01	irgsp1_rep	mRNA	38545767	38558365	.	-	.	ID=Os01t0887400-01;Name=Os01t0887400-01;Locus_id=Os01g0887400;Note=Similar to predicted protein.;Transcript_evidence=AK241667 (DDBJ%2C Best hit);ORF_evidence=A2WXR4 (UniProt);GO=Biological Process: translational termination (GO:0006415),Molecular Function: translation release factor activity (GO:0003747);InterPro=Peptide chain release factor class I/class II (IPR000352);NIAS_FLcDNA=J065192C05;TENOR=Os01t0887400-01;KEGG=Os01t0887400-01
Chr01	irgsp1_rep	five_prime_UTR	38558330	38558365	.	-	.	Parent=Os01t0887400-01
Chr01	irgsp1_rep	CDS	38557970	38558329	.	-	0	Parent=Os01t0887400-01
Chr01	irgsp1_rep	CDS	38557280	38557355	.	-	0	Parent=Os01t0887400-01
Chr01	irgsp1_rep	CDS	38547100	38547230	.	-	2	Parent=Os01t0887400-01
Chr01	irgsp1_rep	CDS	38546926	38546996	.	-	0	Parent=Os01t0887400-01
Chr01	irgsp1_rep	CDS	38546714	38546795	.	-	1	Parent=Os01t0887400-01
Chr01	irgsp1_rep	CDS	38546201	38546221	.	-	0	Parent=Os01t0887400-01
Chr01	irgsp1_rep	three_prime_UTR	38545767	38546200	.	-	.	Parent=Os01t0887400-01
Chr01	irgsp1_rep	mRNA	38563355	38563756	.	-	.	ID=Os01t0887550-00;Name=Os01t0887550-00;Locus_id=Os01g0887550;Note=Similar to OSIGBa0124N08.3 protein.;Transcript_evidence=BT086717 (DDBJ);ORF_evidence=Q01JN4 (UniProt);TENOR=Os01t0887550-00;KEGG=Os01t0887550-00 (EC:1.14.-.-)
Chr01	irgsp1_rep	CDS	38563598	38563756	.	-	0	Parent=Os01t0887550-00
Chr01	irgsp1_rep	three_prime_UTR	38563355	38563597	.	-	.	Parent=Os01t0887550-00
Chr01	irgsp1_rep	mRNA	38566148	38570861	.	-	.	ID=Os01t0887700-01;Name=Os01t0887700-01;Locus_id=Os01g0887700;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK071139 (DDBJ%2C Best hit);ORF_evidence=O49228 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-type%2C conserved site (IPR019786),Zinc finger%2C PHD-finger (IPR019787),Protein of unknown function DUF3594 (IPR021998);NIAS_FLcDNA=J023082D05;Expression=AK071139;TENOR=Os01t0887700-01;KEGG=Os01t0887700-01
Chr01	irgsp1_rep	five_prime_UTR	38570638	38570861	.	-	.	Parent=Os01t0887700-01
Chr01	irgsp1_rep	CDS	38570487	38570637	.	-	0	Parent=Os01t0887700-01
Chr01	irgsp1_rep	CDS	38570368	38570400	.	-	2	Parent=Os01t0887700-01
Chr01	irgsp1_rep	CDS	38569291	38569519	.	-	2	Parent=Os01t0887700-01
Chr01	irgsp1_rep	CDS	38566749	38566878	.	-	1	Parent=Os01t0887700-01
Chr01	irgsp1_rep	CDS	38566402	38566677	.	-	0	Parent=Os01t0887700-01
Chr01	irgsp1_rep	three_prime_UTR	38566148	38566401	.	-	.	Parent=Os01t0887700-01
Chr01	irgsp1_rep	mRNA	38566239	38566880	.	-	.	ID=Os01t0887700-02;Name=Os01t0887700-02;Locus_id=Os01g0887700;Note=Similar to Nucleic acid binding protein.;Transcript_evidence=AK058384 (DDBJ%2C Best hit);ORF_evidence=O49228 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-type%2C conserved site (IPR019786),Zinc finger%2C PHD-finger (IPR019787),Protein of unknown function DUF3594 (IPR021998);NIAS_FLcDNA=001-014-H10;Expression=AK058384;TENOR=Os01t0887700-02;KEGG=Os01t0887700-02
Chr01	irgsp1_rep	CDS	38566749	38566880	.	-	0	Parent=Os01t0887700-02
Chr01	irgsp1_rep	CDS	38566402	38566677	.	-	0	Parent=Os01t0887700-02
Chr01	irgsp1_rep	three_prime_UTR	38566239	38566401	.	-	.	Parent=Os01t0887700-02
Chr01	irgsp1_rep	mRNA	38566225	38566547	.	-	.	ID=Os01t0887700-03;Name=Os01t0887700-03;Locus_id=Os01g0887700;Note=Similar to Nucleic acid binding protein.;Transcript_evidence=AK058498 (DDBJ%2C Best hit);ORF_evidence=O49228 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-finger (IPR019787);NIAS_FLcDNA=001-016-F01;Expression=AK058498;TENOR=Os01t0887700-03;KEGG=Os01t0887700-03
Chr01	irgsp1_rep	five_prime_UTR	38566546	38566547	.	-	.	Parent=Os01t0887700-03
Chr01	irgsp1_rep	CDS	38566402	38566545	.	-	0	Parent=Os01t0887700-03
Chr01	irgsp1_rep	three_prime_UTR	38566225	38566401	.	-	.	Parent=Os01t0887700-03
Chr01	irgsp1_rep	mRNA	38570098	38570860	.	+	.	ID=Os01t0887850-00;Name=Os01t0887850-00;Locus_id=Os01g0887850;Note=Hypothetical gene.;Transcript_evidence=EU949871 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0887850-00;KEGG=Os01t0887850-00
Chr01	irgsp1_rep	CDS	38570098	38570679	.	+	0	Parent=Os01t0887850-00
Chr01	irgsp1_rep	three_prime_UTR	38570680	38570860	.	+	.	Parent=Os01t0887850-00
Chr01	irgsp1_rep	mRNA	38577575	38578151	.	-	.	ID=Os01t0888022-00;Name=Os01t0888022-00;Locus_id=Os01g0888022;Note=Conserved hypothetical protein.;Transcript_evidence=BT087049 (DDBJ);ORF_evidence=NP_001045997.1 (RefSeq);TENOR=Os01t0888022-00
Chr01	irgsp1_rep	five_prime_UTR	38577953	38578151	.	-	.	Parent=Os01t0888022-00
Chr01	irgsp1_rep	CDS	38577575	38577952	.	-	0	Parent=Os01t0888022-00
Chr01	irgsp1_rep	mRNA	38596931	38597801	.	+	.	ID=Os01t0888200-01;Name=Os01t0888200-01;Locus_id=Os01g0888200;Note=Non-protein coding transcript.;Transcript_evidence=AK108013 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-135-H07;TENOR=Os01t0888200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	exon	38596931	38597017	.	+	.	Parent=Os01t0888200-01
Chr01	irgsp1_rep	exon	38597405	38597801	.	+	.	Parent=Os01t0888200-01
Chr01	irgsp1_rep	mRNA	38611671	38613870	.	+	.	ID=Os01t0888300-01;Name=Os01t0888300-01;Locus_id=Os01g0888300;CGSNL Gene Symbol=NAC75;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 75;Oryzabase Gene Symbol Synonym(s)=ONAC075%2C ONAC75;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 075%2C NAC domain-containing protein 75;Note=Similar to NAC-domain containing protein 18 (ANAC018) (NO APICAL MERISTEM protein) (AtNAM).;Transcript_evidence=AK102902 (DDBJ%2C Best hit);ORF_evidence=C0HDS2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=J033113D13;Oryzabase=11498;Expression=AK102902;TENOR=Os01t0888300-01;KEGG=Os01t0888300-01
Chr01	irgsp1_rep	five_prime_UTR	38611671	38611780	.	+	.	Parent=Os01t0888300-01
Chr01	irgsp1_rep	CDS	38611781	38612105	.	+	0	Parent=Os01t0888300-01
Chr01	irgsp1_rep	CDS	38612195	38612463	.	+	2	Parent=Os01t0888300-01
Chr01	irgsp1_rep	CDS	38612954	38613718	.	+	0	Parent=Os01t0888300-01
Chr01	irgsp1_rep	three_prime_UTR	38613719	38613870	.	+	.	Parent=Os01t0888300-01
Chr01	irgsp1_rep	mRNA	38618768	38621877	.	-	.	ID=Os01t0888500-01;Name=Os01t0888500-01;Locus_id=Os01g0888500;CGSNL Gene Symbol=FGAMS;CGSNL Gene Name=FGAM SYNTHETASE;Oryzabase Gene Symbol Synonym(s)=OsFGAMS;Oryzabase Gene Name Synonym(s)=FGAM synthetase;Note=Similar to Phosphoribosylformylglycinamidine synthase.;Transcript_evidence=AK106608 (DDBJ%2C Best hit);ORF_evidence=Q84XV9 (UniProt);GO=Biological Process: 'de novo' IMP biosynthetic process (GO:0006189),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphoribosylformylglycinamidine synthase activity (GO:0004642);InterPro=Phosphoribosylformylglycinamidine synthase (IPR010073),AIR synthase-related protein%2C C-terminal (IPR010918),PurM%2C N-terminal-like (IPR016188),Glutamine amidotransferase type 1 (IPR017926);NIAS_FLcDNA=002-112-E12;Oryzabase=22925;TENOR=Os01t0888500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	38621877	38621877	.	-	.	Parent=Os01t0888500-01
Chr01	irgsp1_rep	CDS	38619495	38621876	.	-	0	Parent=Os01t0888500-01
Chr01	irgsp1_rep	three_prime_UTR	38619490	38619494	.	-	.	Parent=Os01t0888500-01
Chr01	irgsp1_rep	three_prime_UTR	38618768	38619152	.	-	.	Parent=Os01t0888500-01
Chr01	irgsp1_rep	mRNA	38627746	38631927	.	+	.	ID=Os01t0888600-01;Name=Os01t0888600-01;Locus_id=Os01g0888600;CGSNL Gene Symbol=MLO_;CGSNL Gene Name=POWDERY-MILDEW-RESISTANCE GENE O_;Oryzabase Gene Symbol Synonym(s)=OsMLO5%2C OsMLO2;Oryzabase Gene Name Synonym(s)=powdery-MiLdew-resistance gene O5%2C powdery-MiLdew-resistance gene O2%2C Mildew resistance Locus O-2;Note=Similar to Seven transmembrane protein Mlo5 (Fragment).;Transcript_evidence=AK121374 (DDBJ%2C Best hit);ORF_evidence=E2RZR5 (UniProt);GO=Biological Process: cell death (GO:0008219),Cellular Component: integral to membrane (GO:0016021);InterPro=Mlo-related protein (IPR004326);NIAS_FLcDNA=J023127C14;Oryzabase=9185;Expression=AK121374;TENOR=Os01t0888600-01;KEGG=Os01t0888600-01
Chr01	irgsp1_rep	five_prime_UTR	38627746	38628004	.	+	.	Parent=Os01t0888600-01
Chr01	irgsp1_rep	CDS	38628005	38628127	.	+	0	Parent=Os01t0888600-01
Chr01	irgsp1_rep	CDS	38628262	38628319	.	+	0	Parent=Os01t0888600-01
Chr01	irgsp1_rep	CDS	38628519	38628754	.	+	2	Parent=Os01t0888600-01
Chr01	irgsp1_rep	CDS	38629277	38629393	.	+	0	Parent=Os01t0888600-01
Chr01	irgsp1_rep	CDS	38629485	38629539	.	+	0	Parent=Os01t0888600-01
Chr01	irgsp1_rep	CDS	38629714	38629805	.	+	2	Parent=Os01t0888600-01
Chr01	irgsp1_rep	CDS	38629932	38630006	.	+	0	Parent=Os01t0888600-01
Chr01	irgsp1_rep	CDS	38630074	38630162	.	+	0	Parent=Os01t0888600-01
Chr01	irgsp1_rep	CDS	38630317	38630366	.	+	1	Parent=Os01t0888600-01
Chr01	irgsp1_rep	CDS	38630571	38630611	.	+	2	Parent=Os01t0888600-01
Chr01	irgsp1_rep	CDS	38630704	38630913	.	+	0	Parent=Os01t0888600-01
Chr01	irgsp1_rep	CDS	38631019	38631086	.	+	0	Parent=Os01t0888600-01
Chr01	irgsp1_rep	CDS	38631175	38631235	.	+	1	Parent=Os01t0888600-01
Chr01	irgsp1_rep	CDS	38631348	38631581	.	+	0	Parent=Os01t0888600-01
Chr01	irgsp1_rep	three_prime_UTR	38631582	38631927	.	+	.	Parent=Os01t0888600-01
Chr01	irgsp1_rep	mRNA	38629723	38631756	.	+	.	ID=Os01t0888600-02;Name=Os01t0888600-02;Locus_id=Os01g0888600;CGSNL Gene Symbol=MLO_;CGSNL Gene Name=POWDERY-MILDEW-RESISTANCE GENE O_;Oryzabase Gene Symbol Synonym(s)=OsMLO5%2C OsMLO2;Oryzabase Gene Name Synonym(s)=powdery-MiLdew-resistance gene O5%2C powdery-MiLdew-resistance gene O2%2C Mildew resistance Locus O-2;Note=Similar to barley mlo defense gene homolog8.;Transcript_evidence=AK072733 (DDBJ%2C Best hit);ORF_evidence=E2RZR5 (UniProt);GO=Biological Process: cell death (GO:0008219),Cellular Component: integral to membrane (GO:0016021);InterPro=Mlo-related protein (IPR004326);NIAS_FLcDNA=J023141N06;Oryzabase=9185;Expression=AK072733;TENOR=Os01t0888600-02;KEGG=Os01t0888600-02
Chr01	irgsp1_rep	five_prime_UTR	38629723	38629724	.	+	.	Parent=Os01t0888600-02
Chr01	irgsp1_rep	CDS	38629725	38629805	.	+	0	Parent=Os01t0888600-02
Chr01	irgsp1_rep	CDS	38629932	38630006	.	+	0	Parent=Os01t0888600-02
Chr01	irgsp1_rep	CDS	38630074	38630162	.	+	0	Parent=Os01t0888600-02
Chr01	irgsp1_rep	CDS	38630317	38630366	.	+	1	Parent=Os01t0888600-02
Chr01	irgsp1_rep	CDS	38630571	38630611	.	+	2	Parent=Os01t0888600-02
Chr01	irgsp1_rep	CDS	38630704	38630913	.	+	0	Parent=Os01t0888600-02
Chr01	irgsp1_rep	CDS	38631019	38631086	.	+	0	Parent=Os01t0888600-02
Chr01	irgsp1_rep	CDS	38631175	38631235	.	+	1	Parent=Os01t0888600-02
Chr01	irgsp1_rep	CDS	38631348	38631581	.	+	0	Parent=Os01t0888600-02
Chr01	irgsp1_rep	three_prime_UTR	38631582	38631756	.	+	.	Parent=Os01t0888600-02
Chr01	irgsp1_rep	mRNA	38631901	38635571	.	-	.	ID=Os01t0888700-01;Name=Os01t0888700-01;Locus_id=Os01g0888700;Note=RIO-like kinase domain containing protein.;Transcript_evidence=AK073376 (DDBJ%2C Best hit);ORF_evidence=NP_001146908.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009),RIO2 kinase%2C winged helix%2C N-terminal (IPR015285),RIO-like kinase (IPR018934);NIAS_FLcDNA=J033030B16;Expression=AK073376;TENOR=Os01t0888700-01;KEGG=Os01t0888700-01 (EC:2.7.11.1)
Chr01	irgsp1_rep	five_prime_UTR	38635406	38635571	.	-	.	Parent=Os01t0888700-01
Chr01	irgsp1_rep	CDS	38635322	38635405	.	-	0	Parent=Os01t0888700-01
Chr01	irgsp1_rep	CDS	38635172	38635218	.	-	0	Parent=Os01t0888700-01
Chr01	irgsp1_rep	CDS	38634722	38634792	.	-	1	Parent=Os01t0888700-01
Chr01	irgsp1_rep	CDS	38634526	38634639	.	-	2	Parent=Os01t0888700-01
Chr01	irgsp1_rep	CDS	38634253	38634428	.	-	2	Parent=Os01t0888700-01
Chr01	irgsp1_rep	CDS	38634073	38634161	.	-	0	Parent=Os01t0888700-01
Chr01	irgsp1_rep	CDS	38633867	38633984	.	-	1	Parent=Os01t0888700-01
Chr01	irgsp1_rep	CDS	38633630	38633703	.	-	0	Parent=Os01t0888700-01
Chr01	irgsp1_rep	CDS	38633509	38633556	.	-	1	Parent=Os01t0888700-01
Chr01	irgsp1_rep	CDS	38633250	38633415	.	-	1	Parent=Os01t0888700-01
Chr01	irgsp1_rep	CDS	38632742	38632858	.	-	0	Parent=Os01t0888700-01
Chr01	irgsp1_rep	CDS	38632555	38632626	.	-	0	Parent=Os01t0888700-01
Chr01	irgsp1_rep	CDS	38632168	38632467	.	-	0	Parent=Os01t0888700-01
Chr01	irgsp1_rep	three_prime_UTR	38631901	38632167	.	-	.	Parent=Os01t0888700-01
Chr01	irgsp1_rep	mRNA	38632023	38635426	.	+	.	ID=Os01t0888750-00;Name=Os01t0888750-00;Locus_id=Os01g0888750;Note=Hypothetical protein.;Transcript_evidence=tplb0032d06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0888750-00
Chr01	irgsp1_rep	five_prime_UTR	38632023	38632204	.	+	.	Parent=Os01t0888750-00
Chr01	irgsp1_rep	CDS	38632205	38632464	.	+	0	Parent=Os01t0888750-00
Chr01	irgsp1_rep	CDS	38632677	38632704	.	+	1	Parent=Os01t0888750-00
Chr01	irgsp1_rep	three_prime_UTR	38632705	38632856	.	+	.	Parent=Os01t0888750-00
Chr01	irgsp1_rep	three_prime_UTR	38633248	38633383	.	+	.	Parent=Os01t0888750-00
Chr01	irgsp1_rep	three_prime_UTR	38633484	38633552	.	+	.	Parent=Os01t0888750-00
Chr01	irgsp1_rep	three_prime_UTR	38633626	38633703	.	+	.	Parent=Os01t0888750-00
Chr01	irgsp1_rep	three_prime_UTR	38633867	38633964	.	+	.	Parent=Os01t0888750-00
Chr01	irgsp1_rep	three_prime_UTR	38634046	38634149	.	+	.	Parent=Os01t0888750-00
Chr01	irgsp1_rep	three_prime_UTR	38634242	38634426	.	+	.	Parent=Os01t0888750-00
Chr01	irgsp1_rep	three_prime_UTR	38634519	38634643	.	+	.	Parent=Os01t0888750-00
Chr01	irgsp1_rep	three_prime_UTR	38634728	38634788	.	+	.	Parent=Os01t0888750-00
Chr01	irgsp1_rep	three_prime_UTR	38635165	38635215	.	+	.	Parent=Os01t0888750-00
Chr01	irgsp1_rep	three_prime_UTR	38635315	38635426	.	+	.	Parent=Os01t0888750-00
Chr01	irgsp1_rep	mRNA	38637420	38638185	.	+	.	ID=Os01t0888800-01;Name=Os01t0888800-01;Locus_id=Os01g0888800;Note=Conserved hypothetical protein.;Transcript_evidence=AK070163 (DDBJ%2C Best hit);ORF_evidence=A2WXS4 (UniProt);NIAS_FLcDNA=J023046H19;Expression=AK070163;TENOR=Os01t0888800-01;KEGG=Os01t0888800-01
Chr01	irgsp1_rep	five_prime_UTR	38637420	38637523	.	+	.	Parent=Os01t0888800-01
Chr01	irgsp1_rep	CDS	38637524	38637967	.	+	0	Parent=Os01t0888800-01
Chr01	irgsp1_rep	three_prime_UTR	38637968	38638185	.	+	.	Parent=Os01t0888800-01
Chr01	irgsp1_rep	mRNA	38645146	38645757	.	-	.	ID=Os01t0888900-01;Name=Os01t0888900-01;Locus_id=Os01g0888900;Note=Conserved hypothetical protein.;Transcript_evidence=AK120651 (DDBJ%2C Best hit);ORF_evidence=A2WXS6 (UniProt);NIAS_FLcDNA=J013157C10;Expression=AK120651;TENOR=Os01t0888900-01;KEGG=Os01t0888900-01
Chr01	irgsp1_rep	five_prime_UTR	38645709	38645757	.	-	.	Parent=Os01t0888900-01
Chr01	irgsp1_rep	CDS	38645379	38645708	.	-	0	Parent=Os01t0888900-01
Chr01	irgsp1_rep	three_prime_UTR	38645146	38645378	.	-	.	Parent=Os01t0888900-01
Chr01	irgsp1_rep	mRNA	38650527	38654601	.	+	.	ID=Os01t0889000-01;Name=Os01t0889000-01;Locus_id=Os01g0889000;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK103621 (DDBJ%2C Best hit);ORF_evidence=NP_176936.1 (RefSeq);GO=Biological Process: SRP-dependent cotranslational protein targeting to membrane (GO:0006614),Cellular Component: signal recognition particle (GO:0048500),Molecular Function: binding (GO:0005488),Molecular Function: 7S RNA binding (GO:0008312);InterPro=Tetratricopeptide-like helical (IPR011990),Signal recognition particle%2C SRP72 subunit%2C RNA-binding (IPR013699);NIAS_FLcDNA=J033133M12;Expression=AK103621;TENOR=Os01t0889000-01;KEGG=Os01t0889000-01
Chr01	irgsp1_rep	five_prime_UTR	38650527	38650573	.	+	.	Parent=Os01t0889000-01
Chr01	irgsp1_rep	CDS	38650574	38650715	.	+	0	Parent=Os01t0889000-01
Chr01	irgsp1_rep	CDS	38650795	38650931	.	+	2	Parent=Os01t0889000-01
Chr01	irgsp1_rep	CDS	38651569	38651948	.	+	0	Parent=Os01t0889000-01
Chr01	irgsp1_rep	CDS	38652228	38652324	.	+	1	Parent=Os01t0889000-01
Chr01	irgsp1_rep	CDS	38652426	38652713	.	+	0	Parent=Os01t0889000-01
Chr01	irgsp1_rep	CDS	38653424	38654389	.	+	0	Parent=Os01t0889000-01
Chr01	irgsp1_rep	three_prime_UTR	38654390	38654601	.	+	.	Parent=Os01t0889000-01
Chr01	irgsp1_rep	mRNA	38659389	38663607	.	-	.	ID=Os01t0889200-01;Name=Os01t0889200-01;Locus_id=Os01g0889200;Note=Conserved hypothetical protein.;Transcript_evidence=AK066619 (DDBJ%2C Best hit);ORF_evidence=B8A7D1 (UniProt);NIAS_FLcDNA=J013073N16;TENOR=Os01t0889200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	38661311	38663607	.	-	.	Parent=Os01t0889200-01
Chr01	irgsp1_rep	CDS	38661257	38661310	.	-	0	Parent=Os01t0889200-01
Chr01	irgsp1_rep	CDS	38661111	38661169	.	-	0	Parent=Os01t0889200-01
Chr01	irgsp1_rep	CDS	38660979	38661033	.	-	1	Parent=Os01t0889200-01
Chr01	irgsp1_rep	CDS	38660786	38660825	.	-	0	Parent=Os01t0889200-01
Chr01	irgsp1_rep	CDS	38660542	38660639	.	-	2	Parent=Os01t0889200-01
Chr01	irgsp1_rep	CDS	38660401	38660442	.	-	0	Parent=Os01t0889200-01
Chr01	irgsp1_rep	three_prime_UTR	38660390	38660400	.	-	.	Parent=Os01t0889200-01
Chr01	irgsp1_rep	three_prime_UTR	38660161	38660297	.	-	.	Parent=Os01t0889200-01
Chr01	irgsp1_rep	three_prime_UTR	38659866	38660081	.	-	.	Parent=Os01t0889200-01
Chr01	irgsp1_rep	three_prime_UTR	38659389	38659784	.	-	.	Parent=Os01t0889200-01
Chr01	irgsp1_rep	mRNA	38676241	38679639	.	+	.	ID=Os01t0889400-01;Name=Os01t0889400-01;Locus_id=Os01g0889400;RAP-DB Gene Symbol Synonym(s)=CRL1L3%2C OsCrll3%2C OsIG1;RAP-DB Gene Name Synonym(s)=Crl1-like 3%2C indeterminate gametophyte1;CGSNL Gene Symbol=CRL1L3;Oryzabase Gene Symbol Synonym(s)=OsCrll3%2C OsIG1%2C OsLBD1-9%2C LBD1-9%2C OsAS2%2C AS2;Oryzabase Gene Name Synonym(s)=Crl1-like 3%2C indeterminate gametophyte1%2C lateral organ boundaries domain 1-9%2C ASYMMETRIC LEAVES2%2C ASYMMETRIC LEAVES 2;Note=LOB (LATERAL ORGAN BOUNDARIES) domain-containing protein%2C Regulation of empty-glume identity%2C floral organ number control and female gametophyte development;Transcript_evidence=AK071407,AB200237;ORF_evidence=Q8LQH4;InterPro=Lateral organ boundaries%2C LOB (IPR004883);NIAS_FLcDNA=J023089G14;Manual Curation=March 22%2C 2016;Literature_PMID=25324400,15829602;Oryzabase=10456;Expression=AK071407;TENOR=Os01t0889400-01;KEGG=Os01t0889400-01
Chr01	irgsp1_rep	five_prime_UTR	38676241	38676530	.	+	.	Parent=Os01t0889400-01
Chr01	irgsp1_rep	five_prime_UTR	38677189	38677197	.	+	.	Parent=Os01t0889400-01
Chr01	irgsp1_rep	CDS	38677198	38677626	.	+	0	Parent=Os01t0889400-01
Chr01	irgsp1_rep	CDS	38677730	38678110	.	+	0	Parent=Os01t0889400-01
Chr01	irgsp1_rep	three_prime_UTR	38678111	38678158	.	+	.	Parent=Os01t0889400-01
Chr01	irgsp1_rep	three_prime_UTR	38679334	38679639	.	+	.	Parent=Os01t0889400-01
Chr01	irgsp1_rep	mRNA	38676730	38679522	.	+	.	ID=Os01t0889400-02;Name=Os01t0889400-02;Locus_id=Os01g0889400;CGSNL Gene Symbol=CRL1L3;Oryzabase Gene Symbol Synonym(s)=OsCrll3%2C OsIG1%2C OsLBD1-9%2C LBD1-9%2C OsAS2%2C AS2;Oryzabase Gene Name Synonym(s)=Crl1-like 3%2C indeterminate gametophyte1%2C lateral organ boundaries domain 1-9%2C ASYMMETRIC LEAVES2%2C ASYMMETRIC LEAVES 2;Note=Similar to LOB domain protein 6 (ASYMMETRIC LEAVES2).;Transcript_evidence=AK119575 (DDBJ%2C Best hit);ORF_evidence=Q8LQH4 (UniProt);InterPro=Lateral organ boundaries%2C LOB (IPR004883);NIAS_FLcDNA=002-117-B04;Oryzabase=10456;Expression=AK119575;TENOR=Os01t0889400-02;KEGG=Os01t0889400-02
Chr01	irgsp1_rep	five_prime_UTR	38676730	38677197	.	+	.	Parent=Os01t0889400-02
Chr01	irgsp1_rep	CDS	38677198	38677626	.	+	0	Parent=Os01t0889400-02
Chr01	irgsp1_rep	CDS	38677730	38678110	.	+	0	Parent=Os01t0889400-02
Chr01	irgsp1_rep	three_prime_UTR	38678111	38678158	.	+	.	Parent=Os01t0889400-02
Chr01	irgsp1_rep	three_prime_UTR	38679334	38679522	.	+	.	Parent=Os01t0889400-02
Chr01	irgsp1_rep	mRNA	38677310	38677664	.	-	.	ID=Os01t0889601-00;Name=Os01t0889601-00;Locus_id=Os01g0889601;Note=Non-protein coding transcript.;Transcript_evidence=BT085512 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0889601-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	exon	38677310	38677664	.	-	.	Parent=Os01t0889601-00
Chr01	irgsp1_rep	mRNA	38684636	38688097	.	-	.	ID=Os01t0889800-01;Name=Os01t0889800-01;Locus_id=Os01g0889800;CGSNL Gene Symbol=STR13;CGSNL Gene Name=SULFURTRANSFERASE 13;Oryzabase Gene Symbol Synonym(s)=OsStr13;Oryzabase Gene Name Synonym(s)=Sulfurtransferase 13;Note=Rhodanese-like domain containing protein.;Transcript_evidence=AK104708 (DDBJ%2C Best hit),AK070087 (DDBJ%2C Best hit);ORF_evidence=A2Q5X2 (UniProt);InterPro=Rhodanese-like (IPR001763);NIAS_FLcDNA=001-037-E07,J023042J18;Oryzabase=12063;Expression=AK104708;TENOR=Os01t0889800-01;KEGG=Os01t0889800-01
Chr01	irgsp1_rep	five_prime_UTR	38688047	38688097	.	-	.	Parent=Os01t0889800-01
Chr01	irgsp1_rep	CDS	38687370	38688046	.	-	0	Parent=Os01t0889800-01
Chr01	irgsp1_rep	CDS	38685756	38685858	.	-	1	Parent=Os01t0889800-01
Chr01	irgsp1_rep	CDS	38685415	38685666	.	-	0	Parent=Os01t0889800-01
Chr01	irgsp1_rep	CDS	38684811	38684864	.	-	0	Parent=Os01t0889800-01
Chr01	irgsp1_rep	three_prime_UTR	38684636	38684810	.	-	.	Parent=Os01t0889800-01
Chr01	irgsp1_rep	mRNA	38688239	38692619	.	-	.	ID=Os01t0889900-01;Name=Os01t0889900-01;Locus_id=Os01g0889900;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK099945 (DDBJ%2C Best hit);ORF_evidence=NP_001105655.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),S-receptor-like serine/threonine-protein kinase (IPR024171);NIAS_FLcDNA=J013122K21;Expression=AK099945;TENOR=Os01t0889900-01;KEGG=Os01t0889900-01
Chr01	irgsp1_rep	five_prime_UTR	38692538	38692619	.	-	.	Parent=Os01t0889900-01
Chr01	irgsp1_rep	CDS	38692318	38692537	.	-	0	Parent=Os01t0889900-01
Chr01	irgsp1_rep	CDS	38688470	38690730	.	-	2	Parent=Os01t0889900-01
Chr01	irgsp1_rep	three_prime_UTR	38688239	38688469	.	-	.	Parent=Os01t0889900-01
Chr01	irgsp1_rep	mRNA	38698163	38702593	.	-	.	ID=Os01t0890001-01;Name=Os01t0890001-01;Locus_id=Os01g0890001;Note=Hypothetical conserved gene.;Transcript_evidence=AK242501 (DDBJ%2C Best hit);ORF_evidence=B9EVA1 (UniProt);NIAS_FLcDNA=J080308M15;TENOR=Os01t0890001-01;KEGG=Os01t0890001-01
Chr01	irgsp1_rep	five_prime_UTR	38702521	38702593	.	-	.	Parent=Os01t0890001-01
Chr01	irgsp1_rep	CDS	38702434	38702520	.	-	0	Parent=Os01t0890001-01
Chr01	irgsp1_rep	CDS	38698649	38698726	.	-	0	Parent=Os01t0890001-01
Chr01	irgsp1_rep	three_prime_UTR	38698163	38698648	.	-	.	Parent=Os01t0890001-01
Chr01	irgsp1_rep	mRNA	38699392	38701281	.	-	.	ID=Os01t0890050-00;Name=Os01t0890050-00;Locus_id=Os01g0890050;Note=Hypothetical protein.;Transcript_evidence=tplb0028c09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0890050-00
Chr01	irgsp1_rep	five_prime_UTR	38699739	38701281	.	-	.	Parent=Os01t0890050-00
Chr01	irgsp1_rep	CDS	38699466	38699738	.	-	0	Parent=Os01t0890050-00
Chr01	irgsp1_rep	three_prime_UTR	38699392	38699465	.	-	.	Parent=Os01t0890050-00
Chr01	irgsp1_rep	mRNA	38700691	38701615	.	+	.	ID=Os01t0890100-00;Name=Os01t0890100-00;Locus_id=Os01g0890100;CGSNL Gene Symbol=RLCK51;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 51;Oryzabase Gene Symbol Synonym(s)=OsRLCK51%2C OsPSRK2%2C PSRK2;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 51%2C Plant Stature Related receptor-like Kinanse2;Note=Similar to S-domain class receptor-like kinase3.;Transcript_evidence=tplb0056i22 (Wheat FLcDNA);ORF_evidence=NP_001105655.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18768;TENOR=Os01t0890100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	38700691	38700709	.	+	.	Parent=Os01t0890100-00
Chr01	irgsp1_rep	CDS	38700710	38701558	.	+	0	Parent=Os01t0890100-00
Chr01	irgsp1_rep	three_prime_UTR	38701559	38701615	.	+	.	Parent=Os01t0890100-00
Chr01	irgsp1_rep	mRNA	38704701	38707473	.	+	.	ID=Os01t0890200-00;Name=Os01t0890200-00;Locus_id=Os01g0890200;Note=Similar to S-domain class receptor-like kinase3.;Transcript_evidence=AK371960 (DDBJ);ORF_evidence=NP_001105655.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os01t0890200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	38704701	38704872	.	+	0	Parent=Os01t0890200-00
Chr01	irgsp1_rep	CDS	38705279	38707473	.	+	2	Parent=Os01t0890200-00
Chr01	irgsp1_rep	mRNA	38705284	38707481	.	-	.	ID=Os01t0890250-00;Name=Os01t0890250-00;Locus_id=Os01g0890250;Note=Hypothetical protein.;Transcript_evidence=tplb0036o12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0890250-00
Chr01	irgsp1_rep	five_prime_UTR	38706103	38707481	.	-	.	Parent=Os01t0890250-00
Chr01	irgsp1_rep	five_prime_UTR	38705691	38705941	.	-	.	Parent=Os01t0890250-00
Chr01	irgsp1_rep	CDS	38705430	38705690	.	-	0	Parent=Os01t0890250-00
Chr01	irgsp1_rep	three_prime_UTR	38705284	38705429	.	-	.	Parent=Os01t0890250-00
Chr01	irgsp1_rep	mRNA	38712011	38716756	.	-	.	ID=Os01t0890300-01;Name=Os01t0890300-01;Locus_id=Os01g0890300;Note=Conserved hypothetical protein.;Transcript_evidence=AK064497 (DDBJ%2C Best hit);ORF_evidence=B8A7D6 (UniProt);NIAS_FLcDNA=002-111-D01;Expression=AK064497;TENOR=Os01t0890300-01;KEGG=Os01t0890300-01
Chr01	irgsp1_rep	five_prime_UTR	38716689	38716756	.	-	.	Parent=Os01t0890300-01
Chr01	irgsp1_rep	CDS	38716611	38716688	.	-	0	Parent=Os01t0890300-01
Chr01	irgsp1_rep	CDS	38714612	38714692	.	-	0	Parent=Os01t0890300-01
Chr01	irgsp1_rep	CDS	38714135	38714527	.	-	0	Parent=Os01t0890300-01
Chr01	irgsp1_rep	CDS	38713753	38713867	.	-	0	Parent=Os01t0890300-01
Chr01	irgsp1_rep	CDS	38712822	38712952	.	-	2	Parent=Os01t0890300-01
Chr01	irgsp1_rep	three_prime_UTR	38712815	38712821	.	-	.	Parent=Os01t0890300-01
Chr01	irgsp1_rep	three_prime_UTR	38712011	38712432	.	-	.	Parent=Os01t0890300-01
Chr01	irgsp1_rep	mRNA	38718491	38719379	.	+	.	ID=Os01t0890400-00;Name=Os01t0890400-00;Locus_id=Os01g0890400;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5N833 (UniProt);TENOR=Os01t0890400-00
Chr01	irgsp1_rep	CDS	38718491	38718732	.	+	0	Parent=Os01t0890400-00
Chr01	irgsp1_rep	CDS	38718860	38719379	.	+	1	Parent=Os01t0890400-00
Chr01	irgsp1_rep	mRNA	38723347	38724165	.	-	.	ID=Os01t0890500-00;Name=Os01t0890500-00;Locus_id=Os01g0890500;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5N832 (UniProt);TENOR=Os01t0890500-00
Chr01	irgsp1_rep	CDS	38723347	38724165	.	-	0	Parent=Os01t0890500-00
Chr01	irgsp1_rep	mRNA	38732782	38734779	.	+	.	ID=Os01t0890600-00;Name=Os01t0890600-00;Locus_id=Os01g0890600;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK358766 (DDBJ);ORF_evidence=B9EVA3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os01t0890600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	38732782	38732934	.	+	.	Parent=Os01t0890600-00
Chr01	irgsp1_rep	CDS	38732935	38734779	.	+	0	Parent=Os01t0890600-00
Chr01	irgsp1_rep	mRNA	38736349	38739981	.	+	.	ID=Os01t0890900-00;Name=Os01t0890900-00;Locus_id=Os01g0890900;Oryzabase Gene Symbol Synonym(s)=OsZIP4%2C ZIP4%2C SPO22;Oryzabase Gene Name Synonym(s)=ZMM protein OsZIP4%2C rice ZIP4 homolog;Note=Hypothetical conserved gene.;Transcript_evidence=AK355072 (DDBJ);ORF_evidence=Q5N829 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Tetratricopeptide-like helical (IPR011990),Meiosis specific protein SPO22 (IPR013940);Oryzabase=12252;TENOR=Os01t0890900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	38736349	38737856	.	+	0	Parent=Os01t0890900-00
Chr01	irgsp1_rep	CDS	38737943	38738132	.	+	1	Parent=Os01t0890900-00
Chr01	irgsp1_rep	CDS	38738213	38738245	.	+	0	Parent=Os01t0890900-00
Chr01	irgsp1_rep	CDS	38738323	38738940	.	+	0	Parent=Os01t0890900-00
Chr01	irgsp1_rep	CDS	38739045	38739752	.	+	0	Parent=Os01t0890900-00
Chr01	irgsp1_rep	three_prime_UTR	38739753	38739981	.	+	.	Parent=Os01t0890900-00
Chr01	irgsp1_rep	mRNA	38736468	38739972	.	-	.	ID=Os01t0890950-00;Name=Os01t0890950-00;Locus_id=Os01g0890950;Note=Hypothetical protein.;Transcript_evidence=tplb0055a04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0890950-00
Chr01	irgsp1_rep	five_prime_UTR	38739043	38739972	.	-	.	Parent=Os01t0890950-00
Chr01	irgsp1_rep	five_prime_UTR	38738307	38738938	.	-	.	Parent=Os01t0890950-00
Chr01	irgsp1_rep	five_prime_UTR	38738094	38738147	.	-	.	Parent=Os01t0890950-00
Chr01	irgsp1_rep	CDS	38737941	38738093	.	-	0	Parent=Os01t0890950-00
Chr01	irgsp1_rep	CDS	38737416	38737853	.	-	0	Parent=Os01t0890950-00
Chr01	irgsp1_rep	three_prime_UTR	38736468	38737415	.	-	.	Parent=Os01t0890950-00
Chr01	irgsp1_rep	mRNA	38740059	38745917	.	-	.	ID=Os01t0891000-01;Name=Os01t0891000-01;Locus_id=Os01g0891000;Oryzabase Gene Symbol Synonym(s)=OsSTA39;Note=Glycoside hydrolase%2C family 20 protein.;Transcript_evidence=AK070632 (DDBJ%2C Best hit);ORF_evidence=NP_176737.2 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: beta-N-acetylhexosaminidase activity (GO:0004563),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 20 (IPR001540),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Acetylhexosaminidase%2C subunit a/b (IPR015882),Glycoside hydrolase%2C family 20%2C catalytic core (IPR015883),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J023055K01;Oryzabase=19346;Expression=AK070632;TENOR=Os01t0891000-01;KEGG=Os01t0891000-01 (EC:3.2.1.52)
Chr01	irgsp1_rep	five_prime_UTR	38745734	38745917	.	-	.	Parent=Os01t0891000-01
Chr01	irgsp1_rep	five_prime_UTR	38745534	38745569	.	-	.	Parent=Os01t0891000-01
Chr01	irgsp1_rep	CDS	38745216	38745533	.	-	0	Parent=Os01t0891000-01
Chr01	irgsp1_rep	CDS	38745049	38745123	.	-	0	Parent=Os01t0891000-01
Chr01	irgsp1_rep	CDS	38744200	38744235	.	-	0	Parent=Os01t0891000-01
Chr01	irgsp1_rep	CDS	38744014	38744125	.	-	0	Parent=Os01t0891000-01
Chr01	irgsp1_rep	CDS	38743687	38743757	.	-	2	Parent=Os01t0891000-01
Chr01	irgsp1_rep	CDS	38743436	38743566	.	-	0	Parent=Os01t0891000-01
Chr01	irgsp1_rep	CDS	38742690	38742755	.	-	1	Parent=Os01t0891000-01
Chr01	irgsp1_rep	CDS	38742337	38742437	.	-	1	Parent=Os01t0891000-01
Chr01	irgsp1_rep	CDS	38742056	38742115	.	-	2	Parent=Os01t0891000-01
Chr01	irgsp1_rep	CDS	38741932	38741965	.	-	2	Parent=Os01t0891000-01
Chr01	irgsp1_rep	CDS	38741702	38741800	.	-	1	Parent=Os01t0891000-01
Chr01	irgsp1_rep	CDS	38741560	38741619	.	-	1	Parent=Os01t0891000-01
Chr01	irgsp1_rep	CDS	38741051	38741301	.	-	1	Parent=Os01t0891000-01
Chr01	irgsp1_rep	CDS	38740249	38740415	.	-	2	Parent=Os01t0891000-01
Chr01	irgsp1_rep	three_prime_UTR	38740059	38740248	.	-	.	Parent=Os01t0891000-01
Chr01	irgsp1_rep	mRNA	38740061	38746054	.	+	.	ID=Os01t0891033-00;Name=Os01t0891033-00;Locus_id=Os01g0891033;Note=Hypothetical protein.;Transcript_evidence=tplb0024d02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0891033-00
Chr01	irgsp1_rep	five_prime_UTR	38740061	38740425	.	+	.	Parent=Os01t0891033-00
Chr01	irgsp1_rep	five_prime_UTR	38741060	38741303	.	+	.	Parent=Os01t0891033-00
Chr01	irgsp1_rep	five_prime_UTR	38741563	38741610	.	+	.	Parent=Os01t0891033-00
Chr01	irgsp1_rep	five_prime_UTR	38741696	38741807	.	+	.	Parent=Os01t0891033-00
Chr01	irgsp1_rep	five_prime_UTR	38742028	38742115	.	+	.	Parent=Os01t0891033-00
Chr01	irgsp1_rep	five_prime_UTR	38742337	38742445	.	+	.	Parent=Os01t0891033-00
Chr01	irgsp1_rep	five_prime_UTR	38742700	38742772	.	+	.	Parent=Os01t0891033-00
Chr01	irgsp1_rep	five_prime_UTR	38743452	38743563	.	+	.	Parent=Os01t0891033-00
Chr01	irgsp1_rep	five_prime_UTR	38743678	38743740	.	+	.	Parent=Os01t0891033-00
Chr01	irgsp1_rep	five_prime_UTR	38743997	38744140	.	+	.	Parent=Os01t0891033-00
Chr01	irgsp1_rep	five_prime_UTR	38745030	38745139	.	+	.	Parent=Os01t0891033-00
Chr01	irgsp1_rep	five_prime_UTR	38745227	38745416	.	+	.	Parent=Os01t0891033-00
Chr01	irgsp1_rep	CDS	38745417	38745601	.	+	0	Parent=Os01t0891033-00
Chr01	irgsp1_rep	CDS	38745707	38745974	.	+	1	Parent=Os01t0891033-00
Chr01	irgsp1_rep	three_prime_UTR	38745975	38746054	.	+	.	Parent=Os01t0891033-00
Chr01	irgsp1_rep	mRNA	38749092	38750656	.	-	.	ID=Os01t0891066-00;Name=Os01t0891066-00;Locus_id=Os01g0891066;Note=Hypothetical protein.;Transcript_evidence=tplb0028j17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0891066-00
Chr01	irgsp1_rep	five_prime_UTR	38750477	38750656	.	-	.	Parent=Os01t0891066-00
Chr01	irgsp1_rep	CDS	38750283	38750476	.	-	0	Parent=Os01t0891066-00
Chr01	irgsp1_rep	CDS	38749541	38749859	.	-	1	Parent=Os01t0891066-00
Chr01	irgsp1_rep	three_prime_UTR	38749513	38749540	.	-	.	Parent=Os01t0891066-00
Chr01	irgsp1_rep	three_prime_UTR	38749092	38749435	.	-	.	Parent=Os01t0891066-00
Chr01	irgsp1_rep	mRNA	38750313	38750768	.	+	.	ID=Os01t0891100-00;Name=Os01t0891100-00;Locus_id=Os01g0891100;Oryzabase Gene Symbol Synonym(s)=OsPGL7%2C PGL7;Oryzabase Gene Name Synonym(s)=Polygalacturonases-Like 7%2C PG-like 7;Note=Similar to Polygalacturonase.;Transcript_evidence=ab initio prediction;ORF_evidence=Q1A230 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);Oryzabase=22284;TENOR=Os01t0891100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	38750313	38750768	.	+	0	Parent=Os01t0891100-00
Chr01	irgsp1_rep	mRNA	38752615	38754941	.	+	.	ID=Os01t0891300-01;Name=Os01t0891300-01;Locus_id=Os01g0891300;Note=Similar to Allyl alcohol dehydrogenase.;Transcript_evidence=AK063674 (DDBJ%2C Best hit);ORF_evidence=B6TFG1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-119-D10;Expression=AK063674;TENOR=Os01t0891300-01;KEGG=Os01t0891300-01
Chr01	irgsp1_rep	five_prime_UTR	38752615	38752680	.	+	.	Parent=Os01t0891300-01
Chr01	irgsp1_rep	CDS	38752681	38752935	.	+	0	Parent=Os01t0891300-01
Chr01	irgsp1_rep	CDS	38753044	38753221	.	+	0	Parent=Os01t0891300-01
Chr01	irgsp1_rep	CDS	38753857	38754023	.	+	2	Parent=Os01t0891300-01
Chr01	irgsp1_rep	CDS	38754099	38754181	.	+	0	Parent=Os01t0891300-01
Chr01	irgsp1_rep	CDS	38754459	38754855	.	+	1	Parent=Os01t0891300-01
Chr01	irgsp1_rep	three_prime_UTR	38754856	38754941	.	+	.	Parent=Os01t0891300-01
Chr01	irgsp1_rep	mRNA	38752649	38754908	.	+	.	ID=Os01t0891300-02;Name=Os01t0891300-02;Locus_id=Os01g0891300;Note=Similar to Allyl alcohol dehydrogenase.;Transcript_evidence=AK099151 (DDBJ%2C Best hit);ORF_evidence=B6TFG1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023064D04;Expression=AK099151;TENOR=Os01t0891300-02;KEGG=Os01t0891300-02
Chr01	irgsp1_rep	five_prime_UTR	38752649	38752680	.	+	.	Parent=Os01t0891300-02
Chr01	irgsp1_rep	CDS	38752681	38752935	.	+	0	Parent=Os01t0891300-02
Chr01	irgsp1_rep	CDS	38753044	38753221	.	+	0	Parent=Os01t0891300-02
Chr01	irgsp1_rep	CDS	38753857	38754023	.	+	2	Parent=Os01t0891300-02
Chr01	irgsp1_rep	CDS	38754099	38754181	.	+	0	Parent=Os01t0891300-02
Chr01	irgsp1_rep	CDS	38754459	38754855	.	+	1	Parent=Os01t0891300-02
Chr01	irgsp1_rep	three_prime_UTR	38754856	38754908	.	+	.	Parent=Os01t0891300-02
Chr01	irgsp1_rep	mRNA	38752685	38754818	.	-	.	ID=Os01t0891350-00;Name=Os01t0891350-00;Locus_id=Os01g0891350;Note=Hypothetical protein.;Transcript_evidence=BT061853 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0891350-00
Chr01	irgsp1_rep	five_prime_UTR	38754709	38754818	.	-	.	Parent=Os01t0891350-00
Chr01	irgsp1_rep	CDS	38754421	38754708	.	-	0	Parent=Os01t0891350-00
Chr01	irgsp1_rep	three_prime_UTR	38754416	38754420	.	-	.	Parent=Os01t0891350-00
Chr01	irgsp1_rep	three_prime_UTR	38753830	38754057	.	-	.	Parent=Os01t0891350-00
Chr01	irgsp1_rep	three_prime_UTR	38753085	38753217	.	-	.	Parent=Os01t0891350-00
Chr01	irgsp1_rep	three_prime_UTR	38752685	38752963	.	-	.	Parent=Os01t0891350-00
Chr01	irgsp1_rep	mRNA	38755058	38759513	.	-	.	ID=Os01t0891400-01;Name=Os01t0891400-01;Locus_id=Os01g0891400;Note=S1%2C RNA binding domain containing protein.;Transcript_evidence=AK241782 (DDBJ%2C Best hit);ORF_evidence=B6TDY7 (UniProt);InterPro=RNA-binding domain%2C S1 (IPR022967);NIAS_FLcDNA=J065206I07;TENOR=Os01t0891400-01;KEGG=Os01t0891400-01
Chr01	irgsp1_rep	five_prime_UTR	38759291	38759513	.	-	.	Parent=Os01t0891400-01
Chr01	irgsp1_rep	five_prime_UTR	38758568	38758640	.	-	.	Parent=Os01t0891400-01
Chr01	irgsp1_rep	CDS	38758520	38758567	.	-	0	Parent=Os01t0891400-01
Chr01	irgsp1_rep	CDS	38758341	38758415	.	-	0	Parent=Os01t0891400-01
Chr01	irgsp1_rep	CDS	38758147	38758233	.	-	0	Parent=Os01t0891400-01
Chr01	irgsp1_rep	CDS	38757568	38757624	.	-	0	Parent=Os01t0891400-01
Chr01	irgsp1_rep	CDS	38757229	38757321	.	-	0	Parent=Os01t0891400-01
Chr01	irgsp1_rep	CDS	38756601	38756673	.	-	0	Parent=Os01t0891400-01
Chr01	irgsp1_rep	CDS	38756296	38756371	.	-	2	Parent=Os01t0891400-01
Chr01	irgsp1_rep	CDS	38756130	38756220	.	-	1	Parent=Os01t0891400-01
Chr01	irgsp1_rep	CDS	38755925	38756044	.	-	0	Parent=Os01t0891400-01
Chr01	irgsp1_rep	three_prime_UTR	38755923	38755924	.	-	.	Parent=Os01t0891400-01
Chr01	irgsp1_rep	three_prime_UTR	38755058	38755317	.	-	.	Parent=Os01t0891400-01
Chr01	irgsp1_rep	mRNA	38761910	38763273	.	+	.	ID=Os01t0891601-01;Name=Os01t0891601-01;Locus_id=Os01g0891601;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=AK241345 (DDBJ%2C Best hit);ORF_evidence=NP_001147794.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=J065148C06;TENOR=Os01t0891601-01;KEGG=Os01t0891601-01
Chr01	irgsp1_rep	five_prime_UTR	38761910	38762170	.	+	.	Parent=Os01t0891601-01
Chr01	irgsp1_rep	CDS	38762171	38762947	.	+	0	Parent=Os01t0891601-01
Chr01	irgsp1_rep	three_prime_UTR	38762948	38763273	.	+	.	Parent=Os01t0891601-01
Chr01	irgsp1_rep	mRNA	38770126	38771794	.	+	.	ID=Os01t0891700-01;Name=Os01t0891700-01;Locus_id=Os01g0891700;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=AK105471 (DDBJ%2C Best hit);ORF_evidence=B8A7E5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=001-127-A01;Expression=AK105471;TENOR=Os01t0891700-01;KEGG=Os01t0891700-01
Chr01	irgsp1_rep	five_prime_UTR	38770126	38770260	.	+	.	Parent=Os01t0891700-01
Chr01	irgsp1_rep	five_prime_UTR	38770368	38770461	.	+	.	Parent=Os01t0891700-01
Chr01	irgsp1_rep	CDS	38770462	38771382	.	+	0	Parent=Os01t0891700-01
Chr01	irgsp1_rep	three_prime_UTR	38771383	38771794	.	+	.	Parent=Os01t0891700-01
Chr01	irgsp1_rep	mRNA	38770441	38771239	.	-	.	ID=Os01t0891800-00;Name=Os01t0891800-00;Locus_id=Os01g0891800;Note=Non-protein coding transcript.;Transcript_evidence=AK376568 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0891800-00
Chr01	irgsp1_rep	exon	38770973	38771239	.	-	.	Parent=Os01t0891800-00
Chr01	irgsp1_rep	exon	38770441	38770823	.	-	.	Parent=Os01t0891800-00
Chr01	irgsp1_rep	mRNA	38795480	38797375	.	+	.	ID=Os01t0892300-01;Name=Os01t0892300-01;Locus_id=Os01g0892300;Note=Leucine-rich repeat%2C plant specific containing protein.;Transcript_evidence=AK241749 (DDBJ%2C Best hit);ORF_evidence=NP_001147794.1 (RefSeq);NIAS_FLcDNA=J065203A13;TENOR=Os01t0892300-01;KEGG=Os01t0892300-01
Chr01	irgsp1_rep	five_prime_UTR	38795480	38795636	.	+	.	Parent=Os01t0892300-01
Chr01	irgsp1_rep	five_prime_UTR	38795770	38795837	.	+	.	Parent=Os01t0892300-01
Chr01	irgsp1_rep	CDS	38795838	38796677	.	+	0	Parent=Os01t0892300-01
Chr01	irgsp1_rep	three_prime_UTR	38796678	38797375	.	+	.	Parent=Os01t0892300-01
Chr01	irgsp1_rep	mRNA	38807395	38810531	.	-	.	ID=Os01t0892500-01;Name=Os01t0892500-01;Locus_id=Os01g0892500;Note=Similar to carboxylic ester hydrolase.;Transcript_evidence=AK243057 (DDBJ%2C Best hit);ORF_evidence=NP_001151408.1 (RefSeq);InterPro=Pectinacetylesterase (IPR004963);NIAS_FLcDNA=J100013P13;TENOR=Os01t0892500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	38810452	38810531	.	-	.	Parent=Os01t0892500-01
Chr01	irgsp1_rep	CDS	38810316	38810451	.	-	0	Parent=Os01t0892500-01
Chr01	irgsp1_rep	CDS	38809886	38809968	.	-	2	Parent=Os01t0892500-01
Chr01	irgsp1_rep	CDS	38809610	38809736	.	-	0	Parent=Os01t0892500-01
Chr01	irgsp1_rep	CDS	38809188	38809267	.	-	2	Parent=Os01t0892500-01
Chr01	irgsp1_rep	CDS	38809009	38809098	.	-	0	Parent=Os01t0892500-01
Chr01	irgsp1_rep	CDS	38808800	38808924	.	-	0	Parent=Os01t0892500-01
Chr01	irgsp1_rep	CDS	38808661	38808721	.	-	1	Parent=Os01t0892500-01
Chr01	irgsp1_rep	CDS	38808527	38808580	.	-	0	Parent=Os01t0892500-01
Chr01	irgsp1_rep	CDS	38808350	38808427	.	-	0	Parent=Os01t0892500-01
Chr01	irgsp1_rep	CDS	38808017	38808122	.	-	0	Parent=Os01t0892500-01
Chr01	irgsp1_rep	CDS	38807765	38807910	.	-	2	Parent=Os01t0892500-01
Chr01	irgsp1_rep	CDS	38807555	38807659	.	-	0	Parent=Os01t0892500-01
Chr01	irgsp1_rep	three_prime_UTR	38807395	38807554	.	-	.	Parent=Os01t0892500-01
Chr01	irgsp1_rep	mRNA	38812119	38815213	.	-	.	ID=Os01t0892600-02;Name=Os01t0892600-02;Locus_id=Os01g0892600;Note=Pectinacetylesterase family protein.;Transcript_evidence=AK104609 (DDBJ%2C Best hit),AK064882 (DDBJ%2C Best hit);ORF_evidence=NP_001151408.1 (RefSeq);NIAS_FLcDNA=006-309-C02,J013000K01;Expression=AK104609;TENOR=Os01t0892600-02;KEGG=Os01t0892600-02
Chr01	irgsp1_rep	five_prime_UTR	38815180	38815213	.	-	.	Parent=Os01t0892600-02
Chr01	irgsp1_rep	CDS	38815050	38815179	.	-	0	Parent=Os01t0892600-02
Chr01	irgsp1_rep	CDS	38814817	38814899	.	-	2	Parent=Os01t0892600-02
Chr01	irgsp1_rep	CDS	38814578	38814704	.	-	0	Parent=Os01t0892600-02
Chr01	irgsp1_rep	CDS	38814376	38814455	.	-	2	Parent=Os01t0892600-02
Chr01	irgsp1_rep	CDS	38814182	38814271	.	-	0	Parent=Os01t0892600-02
Chr01	irgsp1_rep	CDS	38813877	38814001	.	-	0	Parent=Os01t0892600-02
Chr01	irgsp1_rep	CDS	38813738	38813798	.	-	1	Parent=Os01t0892600-02
Chr01	irgsp1_rep	CDS	38813423	38813476	.	-	0	Parent=Os01t0892600-02
Chr01	irgsp1_rep	CDS	38813088	38813165	.	-	0	Parent=Os01t0892600-02
Chr01	irgsp1_rep	CDS	38812856	38812961	.	-	0	Parent=Os01t0892600-02
Chr01	irgsp1_rep	CDS	38812613	38812758	.	-	2	Parent=Os01t0892600-02
Chr01	irgsp1_rep	CDS	38812350	38812460	.	-	0	Parent=Os01t0892600-02
Chr01	irgsp1_rep	three_prime_UTR	38812119	38812349	.	-	.	Parent=Os01t0892600-02
Chr01	irgsp1_rep	mRNA	38818767	38821456	.	+	.	ID=Os01t0892800-01;Name=Os01t0892800-01;Locus_id=Os01g0892800;Oryzabase Gene Symbol Synonym(s)=OsSTA40;Note=Similar to Ankyrin-kinase.;Transcript_evidence=AK070097 (DDBJ%2C Best hit);ORF_evidence=Q8SAE5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: regulation of signal transduction (GO:0009966),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Ankyrin repeat (IPR002110),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Integrin-linked protein kinase (IPR016253),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J023041P12;Oryzabase=19347;Expression=AK070097;TENOR=Os01t0892800-01;KEGG=Os01t0892800-01
Chr01	irgsp1_rep	five_prime_UTR	38818767	38818966	.	+	.	Parent=Os01t0892800-01
Chr01	irgsp1_rep	CDS	38818967	38819401	.	+	0	Parent=Os01t0892800-01
Chr01	irgsp1_rep	CDS	38819730	38819804	.	+	0	Parent=Os01t0892800-01
Chr01	irgsp1_rep	CDS	38819921	38820025	.	+	0	Parent=Os01t0892800-01
Chr01	irgsp1_rep	CDS	38820128	38820213	.	+	0	Parent=Os01t0892800-01
Chr01	irgsp1_rep	CDS	38820295	38820415	.	+	1	Parent=Os01t0892800-01
Chr01	irgsp1_rep	CDS	38820502	38820581	.	+	0	Parent=Os01t0892800-01
Chr01	irgsp1_rep	CDS	38820746	38820808	.	+	1	Parent=Os01t0892800-01
Chr01	irgsp1_rep	CDS	38820946	38821067	.	+	1	Parent=Os01t0892800-01
Chr01	irgsp1_rep	CDS	38821170	38821255	.	+	2	Parent=Os01t0892800-01
Chr01	irgsp1_rep	CDS	38821367	38821456	.	+	0	Parent=Os01t0892800-01
Chr01	irgsp1_rep	mRNA	38818798	38822164	.	+	.	ID=Os01t0892800-02;Name=Os01t0892800-02;Locus_id=Os01g0892800;Oryzabase Gene Symbol Synonym(s)=OsSTA40;Note=Integrin-linked protein kinase domain containing protein.;Transcript_evidence=AK100268 (DDBJ%2C Best hit);ORF_evidence=Q8SAE5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: regulation of signal transduction (GO:0009966),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Ankyrin repeat (IPR002110),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Integrin-linked protein kinase (IPR016253),Tyrosine-protein kinase%2C catalytic domain (IPR020635),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J023065A22;Oryzabase=19347;Expression=AK100268;TENOR=Os01t0892800-02;KEGG=Os01t0892800-02
Chr01	irgsp1_rep	five_prime_UTR	38818798	38818966	.	+	.	Parent=Os01t0892800-02
Chr01	irgsp1_rep	CDS	38818967	38819401	.	+	0	Parent=Os01t0892800-02
Chr01	irgsp1_rep	CDS	38819730	38819804	.	+	0	Parent=Os01t0892800-02
Chr01	irgsp1_rep	CDS	38819921	38820025	.	+	0	Parent=Os01t0892800-02
Chr01	irgsp1_rep	CDS	38820128	38820213	.	+	0	Parent=Os01t0892800-02
Chr01	irgsp1_rep	CDS	38820295	38820415	.	+	1	Parent=Os01t0892800-02
Chr01	irgsp1_rep	CDS	38820502	38820581	.	+	0	Parent=Os01t0892800-02
Chr01	irgsp1_rep	CDS	38820746	38820808	.	+	1	Parent=Os01t0892800-02
Chr01	irgsp1_rep	CDS	38820946	38821067	.	+	1	Parent=Os01t0892800-02
Chr01	irgsp1_rep	CDS	38821170	38821255	.	+	2	Parent=Os01t0892800-02
Chr01	irgsp1_rep	CDS	38821367	38821491	.	+	0	Parent=Os01t0892800-02
Chr01	irgsp1_rep	CDS	38821624	38821752	.	+	1	Parent=Os01t0892800-02
Chr01	irgsp1_rep	CDS	38821929	38821935	.	+	1	Parent=Os01t0892800-02
Chr01	irgsp1_rep	three_prime_UTR	38821936	38822164	.	+	.	Parent=Os01t0892800-02
Chr01	irgsp1_rep	mRNA	38841929	38842417	.	+	.	ID=Os01t0893300-01;Name=Os01t0893300-01;Locus_id=Os01g0893300;Note=Non-protein coding transcript.;Transcript_evidence=AK063187 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-112-B05;TENOR=Os01t0893300-01
Chr01	irgsp1_rep	exon	38841929	38842417	.	+	.	Parent=Os01t0893300-01
Chr01	irgsp1_rep	mRNA	38843729	38846523	.	+	.	ID=Os01t0893400-01;Name=Os01t0893400-01;Locus_id=Os01g0893400;Note=Zinc finger%2C TAZ-type domain containing protein.;Transcript_evidence=AK071112 (DDBJ%2C Best hit);ORF_evidence=B8A2U0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: transcription cofactor activity (GO:0003712),Molecular Function: histone acetyltransferase activity (GO:0004402),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C TAZ-type (IPR000197),BTB/POZ-like (IPR000210),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069);NIAS_FLcDNA=J023077N08;Oryzabase=20218;Expression=AK071112;TENOR=Os01t0893400-01;KEGG=Os01t0893400-01
Chr01	irgsp1_rep	five_prime_UTR	38843729	38844437	.	+	.	Parent=Os01t0893400-01
Chr01	irgsp1_rep	CDS	38844438	38844788	.	+	0	Parent=Os01t0893400-01
Chr01	irgsp1_rep	CDS	38844905	38845035	.	+	0	Parent=Os01t0893400-01
Chr01	irgsp1_rep	CDS	38845295	38845601	.	+	1	Parent=Os01t0893400-01
Chr01	irgsp1_rep	CDS	38845777	38846090	.	+	0	Parent=Os01t0893400-01
Chr01	irgsp1_rep	CDS	38846248	38846386	.	+	1	Parent=Os01t0893400-01
Chr01	irgsp1_rep	three_prime_UTR	38846387	38846523	.	+	.	Parent=Os01t0893400-01
Chr01	irgsp1_rep	mRNA	38843730	38846506	.	+	.	ID=Os01t0893400-02;Name=Os01t0893400-02;Locus_id=Os01g0893400;Note=Zinc finger%2C TAZ-type domain containing protein.;Transcript_evidence=AK061917 (DDBJ%2C Best hit);ORF_evidence=B8A2U0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: transcription cofactor activity (GO:0003712),Molecular Function: histone acetyltransferase activity (GO:0004402),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C TAZ-type (IPR000197),BTB/POZ-like (IPR000210),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069);NIAS_FLcDNA=001-042-B02;Oryzabase=20218;Expression=AK061917;TENOR=Os01t0893400-02;KEGG=Os01t0893400-02
Chr01	irgsp1_rep	five_prime_UTR	38843730	38843862	.	+	.	Parent=Os01t0893400-02
Chr01	irgsp1_rep	five_prime_UTR	38844428	38844437	.	+	.	Parent=Os01t0893400-02
Chr01	irgsp1_rep	CDS	38844438	38844788	.	+	0	Parent=Os01t0893400-02
Chr01	irgsp1_rep	CDS	38844905	38845035	.	+	0	Parent=Os01t0893400-02
Chr01	irgsp1_rep	CDS	38845295	38845601	.	+	1	Parent=Os01t0893400-02
Chr01	irgsp1_rep	CDS	38845777	38846090	.	+	0	Parent=Os01t0893400-02
Chr01	irgsp1_rep	CDS	38846248	38846386	.	+	1	Parent=Os01t0893400-02
Chr01	irgsp1_rep	three_prime_UTR	38846387	38846506	.	+	.	Parent=Os01t0893400-02
Chr01	irgsp1_rep	mRNA	38853527	38860214	.	-	.	ID=Os01t0893700-00;Name=Os01t0893700-00;Locus_id=Os01g0893700;Note=DOMON domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7F451 (UniProt);InterPro=DOMON domain (IPR005018);TENOR=Os01t0893700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	38859999	38860214	.	-	0	Parent=Os01t0893700-00
Chr01	irgsp1_rep	CDS	38853527	38854054	.	-	0	Parent=Os01t0893700-00
Chr01	irgsp1_rep	mRNA	38864030	38867821	.	+	.	ID=Os01t0894000-01;Name=Os01t0894000-01;Locus_id=Os01g0894000;Note=Metallophosphoesterase domain containing protein.;Transcript_evidence=AK072389 (DDBJ%2C Best hit);ORF_evidence=NP_566200.1 (RefSeq);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Metallophosphoesterase domain (IPR004843);NIAS_FLcDNA=J023075F19;Expression=AK072389;TENOR=Os01t0894000-01;KEGG=Os01t0894000-01
Chr01	irgsp1_rep	five_prime_UTR	38864030	38864066	.	+	.	Parent=Os01t0894000-01
Chr01	irgsp1_rep	CDS	38864067	38864322	.	+	0	Parent=Os01t0894000-01
Chr01	irgsp1_rep	CDS	38865318	38865559	.	+	2	Parent=Os01t0894000-01
Chr01	irgsp1_rep	CDS	38865742	38867328	.	+	0	Parent=Os01t0894000-01
Chr01	irgsp1_rep	CDS	38867414	38867530	.	+	0	Parent=Os01t0894000-01
Chr01	irgsp1_rep	three_prime_UTR	38867531	38867821	.	+	.	Parent=Os01t0894000-01
Chr01	irgsp1_rep	mRNA	38864070	38866521	.	+	.	ID=Os01t0894000-02;Name=Os01t0894000-02;Locus_id=Os01g0894000;Note=Similar to predicted protein.;Transcript_evidence=AK121960 (DDBJ%2C Best hit);ORF_evidence=NP_566200.1 (RefSeq);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Metallophosphoesterase domain (IPR004843);NIAS_FLcDNA=J033107N11;Expression=AK121960;TENOR=Os01t0894000-02;KEGG=Os01t0894000-02
Chr01	irgsp1_rep	CDS	38864070	38864322	.	+	0	Parent=Os01t0894000-02
Chr01	irgsp1_rep	CDS	38865318	38865559	.	+	2	Parent=Os01t0894000-02
Chr01	irgsp1_rep	CDS	38865742	38866521	.	+	0	Parent=Os01t0894000-02
Chr01	irgsp1_rep	mRNA	38869629	38871134	.	-	.	ID=Os01t0894050-00;Name=Os01t0894050-00;Locus_id=Os01g0894050;Note=Myb/SANT-like domain domain containing protein.;Transcript_evidence=BT039927 (DDBJ);ORF_evidence=NP_001176912.1 (RefSeq);InterPro=Myb/SANT-like domain (IPR024752);TENOR=Os01t0894050-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	38870811	38871134	.	-	0	Parent=Os01t0894050-00
Chr01	irgsp1_rep	CDS	38870643	38870718	.	-	0	Parent=Os01t0894050-00
Chr01	irgsp1_rep	CDS	38869931	38870196	.	-	2	Parent=Os01t0894050-00
Chr01	irgsp1_rep	three_prime_UTR	38869629	38869930	.	-	.	Parent=Os01t0894050-00
Chr01	irgsp1_rep	mRNA	38869653	38872162	.	+	.	ID=Os01t0894075-00;Name=Os01t0894075-00;Locus_id=Os01g0894075;Note=Hypothetical protein.;Transcript_evidence=tplb0043a14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0894075-00
Chr01	irgsp1_rep	five_prime_UTR	38869653	38870189	.	+	.	Parent=Os01t0894075-00
Chr01	irgsp1_rep	five_prime_UTR	38870634	38870685	.	+	.	Parent=Os01t0894075-00
Chr01	irgsp1_rep	five_prime_UTR	38870781	38871007	.	+	.	Parent=Os01t0894075-00
Chr01	irgsp1_rep	CDS	38871008	38871115	.	+	0	Parent=Os01t0894075-00
Chr01	irgsp1_rep	CDS	38871247	38871357	.	+	0	Parent=Os01t0894075-00
Chr01	irgsp1_rep	three_prime_UTR	38871358	38872162	.	+	.	Parent=Os01t0894075-00
Chr01	irgsp1_rep	mRNA	38871380	38874494	.	-	.	ID=Os01t0894100-01;Name=Os01t0894100-01;Locus_id=Os01g0894100;Note=Similar to Transposase (Fragment).;Transcript_evidence=AK111398 (DDBJ%2C Best hit);ORF_evidence=NP_001176912.1 (RefSeq);NIAS_FLcDNA=002-182-D08;Expression=AK111398;TENOR=Os01t0894100-01;KEGG=Os01t0894100-01
Chr01	irgsp1_rep	five_prime_UTR	38874149	38874494	.	-	.	Parent=Os01t0894100-01
Chr01	irgsp1_rep	five_prime_UTR	38873265	38873324	.	-	.	Parent=Os01t0894100-01
Chr01	irgsp1_rep	five_prime_UTR	38872749	38872767	.	-	.	Parent=Os01t0894100-01
Chr01	irgsp1_rep	CDS	38872257	38872748	.	-	0	Parent=Os01t0894100-01
Chr01	irgsp1_rep	CDS	38871898	38872161	.	-	0	Parent=Os01t0894100-01
Chr01	irgsp1_rep	three_prime_UTR	38871380	38871897	.	-	.	Parent=Os01t0894100-01
Chr01	irgsp1_rep	mRNA	38885152	38887720	.	-	.	ID=Os01t0894300-01;Name=Os01t0894300-01;Locus_id=Os01g0894300;Oryzabase Gene Symbol Synonym(s)=OsFKI%2C OsFK2;Oryzabase Gene Name Synonym(s)=fructokinase I%2C Fructokinase 2;Note=Similar to Fructokinase 1.;Transcript_evidence=AK060500 (DDBJ%2C Best hit);ORF_evidence=Q0JGZ6 (UniProt);GO=Biological Process: D-ribose metabolic process (GO:0006014),Molecular Function: ribokinase activity (GO:0004747),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Ribokinase (IPR002139),Carbohydrate/puine kinase%2C PfkB%2C conserved site (IPR002173),Carbohydrate/purine kinase (IPR011611);NIAS_FLcDNA=001-017-F08;Oryzabase=14520;Expression=AK060500;TENOR=Os01t0894300-01;KEGG=Os01t0894300-01 (EC:2.7.1.4)
Chr01	irgsp1_rep	five_prime_UTR	38887500	38887720	.	-	.	Parent=Os01t0894300-01
Chr01	irgsp1_rep	CDS	38887107	38887499	.	-	0	Parent=Os01t0894300-01
Chr01	irgsp1_rep	CDS	38885859	38886191	.	-	0	Parent=Os01t0894300-01
Chr01	irgsp1_rep	CDS	38885559	38885675	.	-	0	Parent=Os01t0894300-01
Chr01	irgsp1_rep	CDS	38885338	38885466	.	-	0	Parent=Os01t0894300-01
Chr01	irgsp1_rep	three_prime_UTR	38885152	38885337	.	-	.	Parent=Os01t0894300-01
Chr01	irgsp1_rep	mRNA	38884960	38887597	.	-	.	ID=Os01t0894300-02;Name=Os01t0894300-02;Locus_id=Os01g0894300;Oryzabase Gene Symbol Synonym(s)=OsFKI%2C OsFK2;Oryzabase Gene Name Synonym(s)=fructokinase I%2C Fructokinase 2;Note=Fructokinase (Fragment).;Transcript_evidence=AK120887 (DDBJ%2C Best hit);ORF_evidence=Q0JGZ6-2 (UniProt);GO=Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Carbohydrate/puine kinase%2C PfkB%2C conserved site (IPR002173),Carbohydrate/purine kinase (IPR011611);NIAS_FLcDNA=J023029D05;Oryzabase=14520;Expression=AK120887;TENOR=Os01t0894300-02;KEGG=Os01t0894300-02 (EC:2.7.1.4)
Chr01	irgsp1_rep	five_prime_UTR	38887500	38887597	.	-	.	Parent=Os01t0894300-02
Chr01	irgsp1_rep	CDS	38887444	38887499	.	-	0	Parent=Os01t0894300-02
Chr01	irgsp1_rep	CDS	38887107	38887209	.	-	1	Parent=Os01t0894300-02
Chr01	irgsp1_rep	CDS	38885859	38886191	.	-	0	Parent=Os01t0894300-02
Chr01	irgsp1_rep	CDS	38885559	38885675	.	-	0	Parent=Os01t0894300-02
Chr01	irgsp1_rep	CDS	38885338	38885466	.	-	0	Parent=Os01t0894300-02
Chr01	irgsp1_rep	three_prime_UTR	38884960	38885337	.	-	.	Parent=Os01t0894300-02
Chr01	irgsp1_rep	mRNA	38891151	38893622	.	+	.	ID=Os01t0894500-01;Name=Os01t0894500-01;Locus_id=Os01g0894500;Note=Sep15/SelM redox domain containing protein.;Transcript_evidence=AK103300 (DDBJ%2C Best hit);ORF_evidence=B6T652 (UniProt);InterPro=Thioredoxin-like fold (IPR012336),Sep15/SelM redox (IPR014912);NIAS_FLcDNA=J033125C09;Expression=AK103300;TENOR=Os01t0894500-01;KEGG=Os01t0894500-01
Chr01	irgsp1_rep	five_prime_UTR	38891151	38891346	.	+	.	Parent=Os01t0894500-01
Chr01	irgsp1_rep	CDS	38891347	38891518	.	+	0	Parent=Os01t0894500-01
Chr01	irgsp1_rep	CDS	38892250	38892308	.	+	2	Parent=Os01t0894500-01
Chr01	irgsp1_rep	CDS	38892674	38892855	.	+	0	Parent=Os01t0894500-01
Chr01	irgsp1_rep	CDS	38893300	38893375	.	+	1	Parent=Os01t0894500-01
Chr01	irgsp1_rep	three_prime_UTR	38893376	38893622	.	+	.	Parent=Os01t0894500-01
Chr01	irgsp1_rep	mRNA	38893658	38897428	.	-	.	ID=Os01t0894600-01;Name=Os01t0894600-01;Locus_id=Os01g0894600;Oryzabase Gene Symbol Synonym(s)=OsRFPV-7;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPV-7%2C RING-V protein 7;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK073332 (DDBJ%2C Best hit);ORF_evidence=A3A0G9 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-CH-type (IPR011016),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Protein of unknown function DUF3675 (IPR022143);NIAS_FLcDNA=J033024K13;Oryzabase=11806;Expression=AK073332;TENOR=Os01t0894600-01;KEGG=Os01t0894600-01
Chr01	irgsp1_rep	five_prime_UTR	38897415	38897428	.	-	.	Parent=Os01t0894600-01
Chr01	irgsp1_rep	CDS	38897220	38897414	.	-	0	Parent=Os01t0894600-01
Chr01	irgsp1_rep	CDS	38896304	38896375	.	-	0	Parent=Os01t0894600-01
Chr01	irgsp1_rep	CDS	38895973	38896040	.	-	0	Parent=Os01t0894600-01
Chr01	irgsp1_rep	CDS	38895674	38895821	.	-	1	Parent=Os01t0894600-01
Chr01	irgsp1_rep	CDS	38895485	38895568	.	-	0	Parent=Os01t0894600-01
Chr01	irgsp1_rep	CDS	38894971	38895057	.	-	0	Parent=Os01t0894600-01
Chr01	irgsp1_rep	CDS	38894007	38894012	.	-	0	Parent=Os01t0894600-01
Chr01	irgsp1_rep	three_prime_UTR	38893658	38894006	.	-	.	Parent=Os01t0894600-01
Chr01	irgsp1_rep	mRNA	38893672	38896776	.	-	.	ID=Os01t0894600-02;Name=Os01t0894600-02;Locus_id=Os01g0894600;Oryzabase Gene Symbol Synonym(s)=OsRFPV-7;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPV-7%2C RING-V protein 7;Note=Similar to predicted protein.;Transcript_evidence=AK099522 (DDBJ%2C Best hit);ORF_evidence=A3A0G9 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-CH-type (IPR011016),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Protein of unknown function DUF3675 (IPR022143);NIAS_FLcDNA=J013030F08;Oryzabase=11806;Expression=AK099522;TENOR=Os01t0894600-02;KEGG=Os01t0894600-02
Chr01	irgsp1_rep	five_prime_UTR	38896496	38896776	.	-	.	Parent=Os01t0894600-02
Chr01	irgsp1_rep	CDS	38896304	38896495	.	-	0	Parent=Os01t0894600-02
Chr01	irgsp1_rep	CDS	38895973	38896040	.	-	0	Parent=Os01t0894600-02
Chr01	irgsp1_rep	CDS	38895674	38895821	.	-	1	Parent=Os01t0894600-02
Chr01	irgsp1_rep	CDS	38895485	38895568	.	-	0	Parent=Os01t0894600-02
Chr01	irgsp1_rep	CDS	38894971	38895057	.	-	0	Parent=Os01t0894600-02
Chr01	irgsp1_rep	CDS	38894007	38894012	.	-	0	Parent=Os01t0894600-02
Chr01	irgsp1_rep	three_prime_UTR	38893672	38894006	.	-	.	Parent=Os01t0894600-02
Chr01	irgsp1_rep	mRNA	38893672	38894754	.	-	.	ID=Os01t0894600-03;Name=Os01t0894600-03;Locus_id=Os01g0894600;Oryzabase Gene Symbol Synonym(s)=OsRFPV-7;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPV-7%2C RING-V protein 7;Note=Hypothetical conserved gene.;Transcript_evidence=AK059715 (DDBJ%2C Best hit);ORF_evidence=A3A0G9 (UniProt);NIAS_FLcDNA=001-032-F10;Oryzabase=11806;Expression=AK059715;TENOR=Os01t0894600-03;KEGG=Os01t0894600-03
Chr01	irgsp1_rep	five_prime_UTR	38894069	38894754	.	-	.	Parent=Os01t0894600-03
Chr01	irgsp1_rep	CDS	38893919	38894068	.	-	0	Parent=Os01t0894600-03
Chr01	irgsp1_rep	three_prime_UTR	38893672	38893918	.	-	.	Parent=Os01t0894600-03
Chr01	irgsp1_rep	mRNA	38900613	38902714	.	-	.	ID=Os01t0894700-01;Name=Os01t0894700-01;Locus_id=Os01g0894700;Note=Trigger factor%2C ribosome-binding%2C bacterial domain containing protein.;Transcript_evidence=AK067623 (DDBJ%2C Best hit),AK104876 (DDBJ%2C Best hit);ORF_evidence=B8A7T9 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: protein transport (GO:0015031);InterPro=Trigger factor%2C ribosome-binding%2C bacterial (IPR008881);NIAS_FLcDNA=J013108L20,001-044-E07;TENOR=Os01t0894700-01
Chr01	irgsp1_rep	five_prime_UTR	38902671	38902714	.	-	.	Parent=Os01t0894700-01
Chr01	irgsp1_rep	CDS	38902608	38902670	.	-	0	Parent=Os01t0894700-01
Chr01	irgsp1_rep	CDS	38902418	38902485	.	-	0	Parent=Os01t0894700-01
Chr01	irgsp1_rep	CDS	38902275	38902333	.	-	1	Parent=Os01t0894700-01
Chr01	irgsp1_rep	CDS	38902008	38902105	.	-	2	Parent=Os01t0894700-01
Chr01	irgsp1_rep	CDS	38901633	38901741	.	-	0	Parent=Os01t0894700-01
Chr01	irgsp1_rep	CDS	38901456	38901469	.	-	2	Parent=Os01t0894700-01
Chr01	irgsp1_rep	CDS	38901008	38901109	.	-	0	Parent=Os01t0894700-01
Chr01	irgsp1_rep	CDS	38900748	38900924	.	-	0	Parent=Os01t0894700-01
Chr01	irgsp1_rep	three_prime_UTR	38900613	38900747	.	-	.	Parent=Os01t0894700-01
Chr01	irgsp1_rep	mRNA	38909165	38909694	.	-	.	ID=Os01t0895000-01;Name=Os01t0895000-01;Locus_id=Os01g0895000;Note=Hypothetical protein.;Transcript_evidence=AK107053 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-121-D04;Expression=AK107053;TENOR=Os01t0895000-01;KEGG=Os01t0895000-01
Chr01	irgsp1_rep	five_prime_UTR	38909599	38909694	.	-	.	Parent=Os01t0895000-01
Chr01	irgsp1_rep	CDS	38909377	38909598	.	-	0	Parent=Os01t0895000-01
Chr01	irgsp1_rep	three_prime_UTR	38909165	38909376	.	-	.	Parent=Os01t0895000-01
Chr01	irgsp1_rep	mRNA	38911013	38915492	.	-	.	ID=Os01t0895100-01;Name=Os01t0895100-01;Locus_id=Os01g0895100;Note=Similar to Membrane-associated 30 kDa protein%2C chloroplast precursor (M30).;Transcript_evidence=AK058611 (DDBJ%2C Best hit);ORF_evidence=B6T6V3 (UniProt);InterPro=PspA/IM30 (IPR007157);NIAS_FLcDNA=001-018-A10;Expression=AK058611;TENOR=Os01t0895100-01;KEGG=Os01t0895100-01
Chr01	irgsp1_rep	five_prime_UTR	38915361	38915492	.	-	.	Parent=Os01t0895100-01
Chr01	irgsp1_rep	CDS	38915255	38915360	.	-	0	Parent=Os01t0895100-01
Chr01	irgsp1_rep	CDS	38914135	38914235	.	-	2	Parent=Os01t0895100-01
Chr01	irgsp1_rep	CDS	38913943	38914053	.	-	0	Parent=Os01t0895100-01
Chr01	irgsp1_rep	CDS	38913610	38913674	.	-	0	Parent=Os01t0895100-01
Chr01	irgsp1_rep	CDS	38913443	38913524	.	-	1	Parent=Os01t0895100-01
Chr01	irgsp1_rep	CDS	38913126	38913200	.	-	0	Parent=Os01t0895100-01
Chr01	irgsp1_rep	CDS	38912876	38912946	.	-	0	Parent=Os01t0895100-01
Chr01	irgsp1_rep	CDS	38912696	38912778	.	-	1	Parent=Os01t0895100-01
Chr01	irgsp1_rep	CDS	38911841	38911905	.	-	2	Parent=Os01t0895100-01
Chr01	irgsp1_rep	CDS	38911681	38911755	.	-	0	Parent=Os01t0895100-01
Chr01	irgsp1_rep	CDS	38911284	38911403	.	-	0	Parent=Os01t0895100-01
Chr01	irgsp1_rep	three_prime_UTR	38911013	38911283	.	-	.	Parent=Os01t0895100-01
Chr01	irgsp1_rep	mRNA	38910993	38915423	.	-	.	ID=Os01t0895100-02;Name=Os01t0895100-02;Locus_id=Os01g0895100;Note=Similar to Membrane-associated 30 kDa protein%2C chloroplast precursor (M30).;Transcript_evidence=AK067698 (DDBJ%2C Best hit),AK099166 (DDBJ%2C Best hit);ORF_evidence=B6T6V3 (UniProt);InterPro=PspA/IM30 (IPR007157);NIAS_FLcDNA=J013116L10,J023081J06;TENOR=Os01t0895100-02
Chr01	irgsp1_rep	five_prime_UTR	38915361	38915423	.	-	.	Parent=Os01t0895100-02
Chr01	irgsp1_rep	CDS	38915255	38915360	.	-	0	Parent=Os01t0895100-02
Chr01	irgsp1_rep	CDS	38914135	38914235	.	-	2	Parent=Os01t0895100-02
Chr01	irgsp1_rep	CDS	38913943	38914053	.	-	0	Parent=Os01t0895100-02
Chr01	irgsp1_rep	CDS	38913610	38913674	.	-	0	Parent=Os01t0895100-02
Chr01	irgsp1_rep	CDS	38913443	38913524	.	-	1	Parent=Os01t0895100-02
Chr01	irgsp1_rep	CDS	38913126	38913200	.	-	0	Parent=Os01t0895100-02
Chr01	irgsp1_rep	CDS	38912876	38912946	.	-	0	Parent=Os01t0895100-02
Chr01	irgsp1_rep	CDS	38912696	38912778	.	-	1	Parent=Os01t0895100-02
Chr01	irgsp1_rep	CDS	38911841	38911905	.	-	2	Parent=Os01t0895100-02
Chr01	irgsp1_rep	CDS	38911681	38911755	.	-	0	Parent=Os01t0895100-02
Chr01	irgsp1_rep	CDS	38911284	38911403	.	-	0	Parent=Os01t0895100-02
Chr01	irgsp1_rep	three_prime_UTR	38910993	38911283	.	-	.	Parent=Os01t0895100-02
Chr01	irgsp1_rep	mRNA	38916092	38917927	.	+	.	ID=Os01t0895200-01;Name=Os01t0895200-01;Locus_id=Os01g0895200;Note=DOMON related domain containing protein.;Transcript_evidence=AK063282 (DDBJ%2C Best hit);ORF_evidence=A3A0H2 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=CytoChrome b561%2C eukaryote (IPR004877),DOMON domain (IPR005018),CytoChrome b561/ferric reductase transmembrane (IPR006593);NIAS_FLcDNA=001-113-D02;Expression=AK063282;TENOR=Os01t0895200-01;KEGG=Os01t0895200-01
Chr01	irgsp1_rep	five_prime_UTR	38916092	38916150	.	+	.	Parent=Os01t0895200-01
Chr01	irgsp1_rep	CDS	38916151	38916180	.	+	0	Parent=Os01t0895200-01
Chr01	irgsp1_rep	CDS	38916187	38916366	.	+	0	Parent=Os01t0895200-01
Chr01	irgsp1_rep	CDS	38916454	38916922	.	+	0	Parent=Os01t0895200-01
Chr01	irgsp1_rep	CDS	38917006	38917640	.	+	2	Parent=Os01t0895200-01
Chr01	irgsp1_rep	three_prime_UTR	38917641	38917927	.	+	.	Parent=Os01t0895200-01
Chr01	irgsp1_rep	mRNA	38924933	38926377	.	+	.	ID=Os01t0895300-01;Name=Os01t0895300-01;Locus_id=Os01g0895300;Note=CytoChrome b561%2C eukaryote domain containing protein.;Transcript_evidence=AK073544 (DDBJ%2C Best hit);ORF_evidence=A2WXW5 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=CytoChrome b561%2C eukaryote (IPR004877),DOMON domain (IPR005018),CytoChrome b561/ferric reductase transmembrane (IPR006593);NIAS_FLcDNA=J033041H18;TENOR=Os01t0895300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	38924933	38925118	.	+	0	Parent=Os01t0895300-01
Chr01	irgsp1_rep	CDS	38925243	38926169	.	+	0	Parent=Os01t0895300-01
Chr01	irgsp1_rep	three_prime_UTR	38926170	38926377	.	+	.	Parent=Os01t0895300-01
Chr01	irgsp1_rep	mRNA	38928823	38930008	.	+	.	ID=Os01t0895500-01;Name=Os01t0895500-01;Locus_id=Os01g0895500;Oryzabase Gene Symbol Synonym(s)=OsRhmbd5%2C RHMBD5;Oryzabase Gene Name Synonym(s)=Rhomboid 5%2C RHOMBOID 5;Note=Peptidase S54%2C rhomboid domain containing protein.;Transcript_evidence=AK063649 (DDBJ%2C Best hit);ORF_evidence=E5GC88 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S54%2C rhomboid domain (IPR022764);NIAS_FLcDNA=001-119-A10;Oryzabase=20061;Expression=AK063649;TENOR=Os01t0895500-01;KEGG=Os01t0895500-01
Chr01	irgsp1_rep	five_prime_UTR	38928823	38929005	.	+	.	Parent=Os01t0895500-01
Chr01	irgsp1_rep	CDS	38929006	38929827	.	+	0	Parent=Os01t0895500-01
Chr01	irgsp1_rep	three_prime_UTR	38929828	38930008	.	+	.	Parent=Os01t0895500-01
Chr01	irgsp1_rep	mRNA	38930465	38934752	.	-	.	ID=Os01t0895600-01;Name=Os01t0895600-01;Locus_id=Os01g0895600;Oryzabase Gene Name Synonym(s)=calreticulin;Note=Similar to Calreticulin-3.;Transcript_evidence=AK099626 (DDBJ%2C Best hit);ORF_evidence=B6TA28 (UniProt);GO=Biological Process: protein folding (GO:0006457),Cellular Component: endoplasmic reticulum (GO:0005783),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Calreticulin/calnexin (IPR001580),Concanavalin A-like lectin/glucanase (IPR008985),Calreticulin/calnexin%2C P (IPR009033),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Calreticulin/calnexin%2C conserved site (IPR018124);NIAS_FLcDNA=J013055B02;Oryzabase=22044;TENOR=Os01t0895600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	38934699	38934752	.	-	.	Parent=Os01t0895600-01
Chr01	irgsp1_rep	CDS	38934590	38934698	.	-	0	Parent=Os01t0895600-01
Chr01	irgsp1_rep	CDS	38933732	38933839	.	-	2	Parent=Os01t0895600-01
Chr01	irgsp1_rep	CDS	38933407	38933599	.	-	2	Parent=Os01t0895600-01
Chr01	irgsp1_rep	CDS	38932941	38933199	.	-	1	Parent=Os01t0895600-01
Chr01	irgsp1_rep	CDS	38932801	38932857	.	-	0	Parent=Os01t0895600-01
Chr01	irgsp1_rep	CDS	38932676	38932723	.	-	0	Parent=Os01t0895600-01
Chr01	irgsp1_rep	CDS	38932211	38932399	.	-	0	Parent=Os01t0895600-01
Chr01	irgsp1_rep	three_prime_UTR	38932170	38932210	.	-	.	Parent=Os01t0895600-01
Chr01	irgsp1_rep	three_prime_UTR	38931978	38932045	.	-	.	Parent=Os01t0895600-01
Chr01	irgsp1_rep	three_prime_UTR	38931789	38931884	.	-	.	Parent=Os01t0895600-01
Chr01	irgsp1_rep	three_prime_UTR	38931650	38931706	.	-	.	Parent=Os01t0895600-01
Chr01	irgsp1_rep	three_prime_UTR	38931478	38931570	.	-	.	Parent=Os01t0895600-01
Chr01	irgsp1_rep	three_prime_UTR	38930924	38930956	.	-	.	Parent=Os01t0895600-01
Chr01	irgsp1_rep	three_prime_UTR	38930465	38930842	.	-	.	Parent=Os01t0895600-01
Chr01	irgsp1_rep	mRNA	38948587	38950479	.	+	.	ID=Os01t0896200-01;Name=Os01t0896200-01;Locus_id=Os01g0896200;Note=Similar to SF16 protein.;Transcript_evidence=AK105622 (DDBJ%2C Best hit);ORF_evidence=B6UEB3 (UniProt);NIAS_FLcDNA=001-200-C07;TENOR=Os01t0896200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	38948587	38948588	.	+	.	Parent=Os01t0896200-01
Chr01	irgsp1_rep	CDS	38948589	38948798	.	+	0	Parent=Os01t0896200-01
Chr01	irgsp1_rep	CDS	38948890	38949009	.	+	0	Parent=Os01t0896200-01
Chr01	irgsp1_rep	CDS	38949624	38950307	.	+	0	Parent=Os01t0896200-01
Chr01	irgsp1_rep	three_prime_UTR	38950308	38950479	.	+	.	Parent=Os01t0896200-01
Chr01	irgsp1_rep	mRNA	38953663	38959110	.	+	.	ID=Os01t0896300-00;Name=Os01t0896300-00;Locus_id=Os01g0896300;Oryzabase Gene Symbol Synonym(s)=FSM%2C FAS1;Oryzabase Gene Name Synonym(s)=FLATENNED SHOOT MERISTEM%2C FASCIATA1%2C CAF-1 p150 subunit%2C p150 subunit of Chromatin assembly factor-1;Note=Hypothetical conserved gene.;Transcript_evidence=AB360550 (DDBJ%2C Best hit);ORF_evidence=A5GXS3 (UniProt);InterPro=Chromatin assembly factor 1 subunit A (IPR022043);Oryzabase=12399;TENOR=Os01t0896300-00;KEGG=Os01t0896300-00
Chr01	irgsp1_rep	CDS	38953663	38954283	.	+	0	Parent=Os01t0896300-00
Chr01	irgsp1_rep	CDS	38954381	38954480	.	+	0	Parent=Os01t0896300-00
Chr01	irgsp1_rep	CDS	38954786	38954930	.	+	2	Parent=Os01t0896300-00
Chr01	irgsp1_rep	CDS	38955609	38955732	.	+	1	Parent=Os01t0896300-00
Chr01	irgsp1_rep	CDS	38956184	38956701	.	+	0	Parent=Os01t0896300-00
Chr01	irgsp1_rep	CDS	38956852	38957199	.	+	1	Parent=Os01t0896300-00
Chr01	irgsp1_rep	CDS	38957298	38957379	.	+	1	Parent=Os01t0896300-00
Chr01	irgsp1_rep	CDS	38957450	38957579	.	+	0	Parent=Os01t0896300-00
Chr01	irgsp1_rep	CDS	38958048	38958448	.	+	2	Parent=Os01t0896300-00
Chr01	irgsp1_rep	CDS	38958531	38958668	.	+	0	Parent=Os01t0896300-00
Chr01	irgsp1_rep	CDS	38958804	38958849	.	+	0	Parent=Os01t0896300-00
Chr01	irgsp1_rep	CDS	38958941	38959110	.	+	2	Parent=Os01t0896300-00
Chr01	irgsp1_rep	mRNA	38958022	38958438	.	-	.	ID=Os01t0896350-00;Name=Os01t0896350-00;Locus_id=Os01g0896350;Note=Non-protein coding transcript.;Transcript_evidence=EU950022 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0896350-00
Chr01	irgsp1_rep	exon	38958022	38958438	.	-	.	Parent=Os01t0896350-00
Chr01	irgsp1_rep	mRNA	38959429	38960235	.	-	.	ID=Os01t0896400-01;Name=Os01t0896400-01;Locus_id=Os01g0896400;Note=Similar to JHL23J11.5 protein.;Transcript_evidence=AK107067 (DDBJ%2C Best hit);ORF_evidence=E6NU40 (UniProt);NIAS_FLcDNA=002-121-E07;Expression=AK107067;TENOR=Os01t0896400-01;KEGG=Os01t0896400-01
Chr01	irgsp1_rep	five_prime_UTR	38960125	38960235	.	-	.	Parent=Os01t0896400-01
Chr01	irgsp1_rep	CDS	38959624	38960124	.	-	0	Parent=Os01t0896400-01
Chr01	irgsp1_rep	three_prime_UTR	38959429	38959623	.	-	.	Parent=Os01t0896400-01
Chr01	irgsp1_rep	mRNA	38961459	38966130	.	-	.	ID=Os01t0896500-01;Name=Os01t0896500-01;Locus_id=Os01g0896500;CGSNL Gene Symbol=STR10;CGSNL Gene Name=SULFURTRANSFERASE 10;Oryzabase Gene Symbol Synonym(s)=OsStr10;Oryzabase Gene Name Synonym(s)=Sulfurtransferase 10;Note=Rhodanese-like domain containing protein.;Transcript_evidence=AK120594 (DDBJ%2C Best hit);ORF_evidence=Q5N8N4 (UniProt);InterPro=Rhodanese-like (IPR001763);NIAS_FLcDNA=J013147G23;Oryzabase=12060;Expression=AK120594;TENOR=Os01t0896500-01;KEGG=Os01t0896500-01
Chr01	irgsp1_rep	five_prime_UTR	38966050	38966130	.	-	.	Parent=Os01t0896500-01
Chr01	irgsp1_rep	CDS	38965957	38966049	.	-	0	Parent=Os01t0896500-01
Chr01	irgsp1_rep	CDS	38965044	38965862	.	-	0	Parent=Os01t0896500-01
Chr01	irgsp1_rep	CDS	38964849	38964949	.	-	0	Parent=Os01t0896500-01
Chr01	irgsp1_rep	CDS	38964654	38964769	.	-	1	Parent=Os01t0896500-01
Chr01	irgsp1_rep	CDS	38964246	38964322	.	-	2	Parent=Os01t0896500-01
Chr01	irgsp1_rep	CDS	38963853	38963945	.	-	0	Parent=Os01t0896500-01
Chr01	irgsp1_rep	CDS	38963680	38963763	.	-	0	Parent=Os01t0896500-01
Chr01	irgsp1_rep	CDS	38963501	38963596	.	-	0	Parent=Os01t0896500-01
Chr01	irgsp1_rep	CDS	38963248	38963310	.	-	0	Parent=Os01t0896500-01
Chr01	irgsp1_rep	CDS	38963005	38963035	.	-	0	Parent=Os01t0896500-01
Chr01	irgsp1_rep	CDS	38962282	38962328	.	-	2	Parent=Os01t0896500-01
Chr01	irgsp1_rep	CDS	38962051	38962109	.	-	0	Parent=Os01t0896500-01
Chr01	irgsp1_rep	CDS	38961694	38961886	.	-	1	Parent=Os01t0896500-01
Chr01	irgsp1_rep	three_prime_UTR	38961459	38961693	.	-	.	Parent=Os01t0896500-01
Chr01	irgsp1_rep	mRNA	38961464	38965325	.	-	.	ID=Os01t0896500-02;Name=Os01t0896500-02;Locus_id=Os01g0896500;CGSNL Gene Symbol=STR10;CGSNL Gene Name=SULFURTRANSFERASE 10;Oryzabase Gene Symbol Synonym(s)=OsStr10;Oryzabase Gene Name Synonym(s)=Sulfurtransferase 10;Note=Similar to predicted protein.;Transcript_evidence=AK060416 (DDBJ%2C Best hit);ORF_evidence=Q5N8N4 (UniProt);InterPro=Rhodanese-like (IPR001763);NIAS_FLcDNA=001-010-E12;Oryzabase=12060;Expression=AK060416;TENOR=Os01t0896500-02;KEGG=Os01t0896500-02
Chr01	irgsp1_rep	CDS	38965044	38965325	.	-	0	Parent=Os01t0896500-02
Chr01	irgsp1_rep	CDS	38964849	38964949	.	-	0	Parent=Os01t0896500-02
Chr01	irgsp1_rep	CDS	38964654	38964769	.	-	1	Parent=Os01t0896500-02
Chr01	irgsp1_rep	CDS	38964246	38964322	.	-	2	Parent=Os01t0896500-02
Chr01	irgsp1_rep	CDS	38963853	38963945	.	-	0	Parent=Os01t0896500-02
Chr01	irgsp1_rep	CDS	38963680	38963763	.	-	0	Parent=Os01t0896500-02
Chr01	irgsp1_rep	CDS	38963501	38963596	.	-	0	Parent=Os01t0896500-02
Chr01	irgsp1_rep	CDS	38963248	38963310	.	-	0	Parent=Os01t0896500-02
Chr01	irgsp1_rep	CDS	38963005	38963035	.	-	0	Parent=Os01t0896500-02
Chr01	irgsp1_rep	CDS	38962282	38962328	.	-	2	Parent=Os01t0896500-02
Chr01	irgsp1_rep	CDS	38962051	38962109	.	-	0	Parent=Os01t0896500-02
Chr01	irgsp1_rep	CDS	38961694	38961886	.	-	1	Parent=Os01t0896500-02
Chr01	irgsp1_rep	three_prime_UTR	38961464	38961693	.	-	.	Parent=Os01t0896500-02
Chr01	irgsp1_rep	mRNA	38968295	38971038	.	+	.	ID=Os01t0896700-00;Name=Os01t0896700-00;Locus_id=Os01g0896700;Note=Similar to 60S ribosomal protein L5.;Transcript_evidence=EU267958 (DDBJ%2C Best hit);ORF_evidence=B7EWY9 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735),Molecular Function: 5S rRNA binding (GO:0008097);InterPro=Ribosomal protein L18/L5 (IPR005484),Ribosomal protein L5%2C eukaryotic/archaeal (IPR005485);TENOR=Os01t0896700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	38968295	38968377	.	+	.	Parent=Os01t0896700-00
Chr01	irgsp1_rep	CDS	38968378	38968380	.	+	0	Parent=Os01t0896700-00
Chr01	irgsp1_rep	CDS	38969102	38969174	.	+	0	Parent=Os01t0896700-00
Chr01	irgsp1_rep	CDS	38969272	38969363	.	+	2	Parent=Os01t0896700-00
Chr01	irgsp1_rep	CDS	38969473	38969599	.	+	0	Parent=Os01t0896700-00
Chr01	irgsp1_rep	CDS	38969691	38969770	.	+	2	Parent=Os01t0896700-00
Chr01	irgsp1_rep	CDS	38969853	38969969	.	+	0	Parent=Os01t0896700-00
Chr01	irgsp1_rep	CDS	38970134	38970268	.	+	0	Parent=Os01t0896700-00
Chr01	irgsp1_rep	CDS	38970455	38970624	.	+	0	Parent=Os01t0896700-00
Chr01	irgsp1_rep	CDS	38970711	38970828	.	+	1	Parent=Os01t0896700-00
Chr01	irgsp1_rep	three_prime_UTR	38970829	38971038	.	+	.	Parent=Os01t0896700-00
Chr01	irgsp1_rep	mRNA	38973653	38976375	.	+	.	ID=Os01t0896800-01;Name=Os01t0896800-01;Locus_id=Os01g0896800;CGSNL Gene Symbol=RPL5;CGSNL Gene Name=RIBOSOMAL PROTEIN L5;Oryzabase Gene Symbol Synonym(s)=rpl5%2C RL5%2C RPL18p/L5e%2C RPL18p%2C RPL5e%2C OsRPL5%2C OsRPL5e%2C OsRPL18p;Oryzabase Gene Name Synonym(s)=ribosomal protein L5%2C Ribosomal protein L5a%2C Ribosomal protein L5b;Note=Ribosomal protein L18/L5 domain containing protein.;Transcript_evidence=AK104693 (DDBJ%2C Best hit),AK065268 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735),Molecular Function: 5S rRNA binding (GO:0008097);InterPro=Ribosomal protein L18/L5 (IPR005484),Ribosomal protein L5%2C eukaryotic/archaeal (IPR005485);NIAS_FLcDNA=001-036-H05,J013002K21;Oryzabase=14460;TENOR=Os01t0896800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	38973653	38973742	.	+	0	Parent=Os01t0896800-01
Chr01	irgsp1_rep	CDS	38974426	38974498	.	+	0	Parent=Os01t0896800-01
Chr01	irgsp1_rep	CDS	38974582	38974673	.	+	2	Parent=Os01t0896800-01
Chr01	irgsp1_rep	CDS	38974783	38974909	.	+	0	Parent=Os01t0896800-01
Chr01	irgsp1_rep	CDS	38975001	38975080	.	+	2	Parent=Os01t0896800-01
Chr01	irgsp1_rep	CDS	38975169	38975285	.	+	0	Parent=Os01t0896800-01
Chr01	irgsp1_rep	CDS	38975452	38975586	.	+	0	Parent=Os01t0896800-01
Chr01	irgsp1_rep	CDS	38975787	38975956	.	+	0	Parent=Os01t0896800-01
Chr01	irgsp1_rep	CDS	38976041	38976158	.	+	1	Parent=Os01t0896800-01
Chr01	irgsp1_rep	three_prime_UTR	38976159	38976375	.	+	.	Parent=Os01t0896800-01
Chr01	irgsp1_rep	mRNA	38981299	38984176	.	-	.	ID=Os01t0897000-01;Name=Os01t0897000-01;Locus_id=Os01g0897000;CGSNL Gene Symbol=CDKB%3B1;CGSNL Gene Name=CYCLIN-DEPENDENT KINASE B%3B1;Oryzabase Gene Symbol Synonym(s)=CDKB%3B1%2C Orysa%3BCDKB%3B1%2C CDKB1%3B1%2C Orysa%3BCDKB1%3B1%2C OsCDKB1.1%2C CDKB1.1%2C OsCDKB1%3B1;Oryzabase Gene Name Synonym(s)=B1-type cyclin-dependent kinase;Note=Similar to Cyclin-dependent kinase B1-1.;Transcript_evidence=AK242651 (DDBJ%2C Best hit);ORF_evidence=Q8L4P8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J090026B08;Oryzabase=13289;TENOR=Os01t0897000-01;KEGG=Os01t0897000-01 (EC:2.7.11.22)
Chr01	irgsp1_rep	five_prime_UTR	38984079	38984176	.	-	.	Parent=Os01t0897000-01
Chr01	irgsp1_rep	CDS	38983737	38984078	.	-	0	Parent=Os01t0897000-01
Chr01	irgsp1_rep	CDS	38983159	38983220	.	-	0	Parent=Os01t0897000-01
Chr01	irgsp1_rep	CDS	38982938	38983049	.	-	1	Parent=Os01t0897000-01
Chr01	irgsp1_rep	CDS	38982765	38982858	.	-	0	Parent=Os01t0897000-01
Chr01	irgsp1_rep	CDS	38982315	38982384	.	-	2	Parent=Os01t0897000-01
Chr01	irgsp1_rep	CDS	38981859	38981997	.	-	1	Parent=Os01t0897000-01
Chr01	irgsp1_rep	CDS	38981544	38981636	.	-	0	Parent=Os01t0897000-01
Chr01	irgsp1_rep	three_prime_UTR	38981299	38981543	.	-	.	Parent=Os01t0897000-01
Chr01	irgsp1_rep	mRNA	38986663	38990488	.	+	.	ID=Os01t0897100-01;Name=Os01t0897100-01;Locus_id=Os01g0897100;Note=Conserved hypothetical protein.;Transcript_evidence=AK072393 (DDBJ%2C Best hit);ORF_evidence=A3A0I4 (UniProt);NIAS_FLcDNA=J023080E06;Expression=AK072393;TENOR=Os01t0897100-01;KEGG=Os01t0897100-01
Chr01	irgsp1_rep	five_prime_UTR	38986663	38986821	.	+	.	Parent=Os01t0897100-01
Chr01	irgsp1_rep	five_prime_UTR	38987427	38987450	.	+	.	Parent=Os01t0897100-01
Chr01	irgsp1_rep	CDS	38987451	38987793	.	+	0	Parent=Os01t0897100-01
Chr01	irgsp1_rep	CDS	38988567	38989684	.	+	2	Parent=Os01t0897100-01
Chr01	irgsp1_rep	CDS	38989790	38989858	.	+	0	Parent=Os01t0897100-01
Chr01	irgsp1_rep	three_prime_UTR	38989859	38989985	.	+	.	Parent=Os01t0897100-01
Chr01	irgsp1_rep	three_prime_UTR	38990211	38990488	.	+	.	Parent=Os01t0897100-01
Chr01	irgsp1_rep	mRNA	38987448	38989863	.	-	.	ID=Os01t0897150-00;Name=Os01t0897150-00;Locus_id=Os01g0897150;Note=Non-protein coding transcript.;Transcript_evidence=tplb0026c15 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os01t0897150-00
Chr01	irgsp1_rep	exon	38989800	38989863	.	-	.	Parent=Os01t0897150-00
Chr01	irgsp1_rep	exon	38988544	38989693	.	-	.	Parent=Os01t0897150-00
Chr01	irgsp1_rep	exon	38987448	38987774	.	-	.	Parent=Os01t0897150-00
Chr01	irgsp1_rep	mRNA	38990969	38993803	.	-	.	ID=Os01t0897200-01;Name=Os01t0897200-01;Locus_id=Os01g0897200;CGSNL Gene Symbol=RNS2;CGSNL Gene Name=RIBONUCLEASE 2;Oryzabase Gene Symbol Synonym(s)=OsRNS2;Oryzabase Gene Name Synonym(s)=RNase 2;Note=Similar to Ribonuclease 2 precursor (EC 3.1.27.1).;Transcript_evidence=AK105061 (DDBJ%2C Best hit),AK061505 (DDBJ%2C Best hit),AK065055 (DDBJ%2C Best hit);ORF_evidence=B6TGK1 (UniProt);GO=Molecular Function: RNA binding (GO:0003723),Molecular Function: ribonuclease T2 activity (GO:0033897);InterPro=Ribonuclease T2 (IPR001568),Ribonuclease T2%2C active site (IPR018188);NIAS_FLcDNA=001-043-H09,006-309-E09,J013001J04;Oryzabase=13013;TENOR=Os01t0897200-01
Chr01	irgsp1_rep	five_prime_UTR	38993731	38993803	.	-	.	Parent=Os01t0897200-01
Chr01	irgsp1_rep	CDS	38993507	38993730	.	-	0	Parent=Os01t0897200-01
Chr01	irgsp1_rep	CDS	38993328	38993356	.	-	1	Parent=Os01t0897200-01
Chr01	irgsp1_rep	CDS	38993114	38993187	.	-	2	Parent=Os01t0897200-01
Chr01	irgsp1_rep	CDS	38992866	38992967	.	-	0	Parent=Os01t0897200-01
Chr01	irgsp1_rep	CDS	38992477	38992572	.	-	0	Parent=Os01t0897200-01
Chr01	irgsp1_rep	CDS	38992103	38992264	.	-	0	Parent=Os01t0897200-01
Chr01	irgsp1_rep	CDS	38991447	38991543	.	-	0	Parent=Os01t0897200-01
Chr01	irgsp1_rep	CDS	38991286	38991356	.	-	2	Parent=Os01t0897200-01
Chr01	irgsp1_rep	three_prime_UTR	38990969	38991285	.	-	.	Parent=Os01t0897200-01
Chr01	irgsp1_rep	mRNA	38990982	38993801	.	-	.	ID=Os01t0897200-02;Name=Os01t0897200-02;Locus_id=Os01g0897200;CGSNL Gene Symbol=RNS2;CGSNL Gene Name=RIBONUCLEASE 2;Oryzabase Gene Symbol Synonym(s)=OsRNS2;Oryzabase Gene Name Synonym(s)=RNase 2;Note=Similar to Ribonuclease 2 precursor (EC 3.1.27.1).;Transcript_evidence=AK100403 (DDBJ%2C Best hit);ORF_evidence=B6TGK1 (UniProt);GO=Molecular Function: RNA binding (GO:0003723),Molecular Function: ribonuclease T2 activity (GO:0033897);InterPro=Ribonuclease T2 (IPR001568),Ribonuclease T2%2C active site (IPR018188);NIAS_FLcDNA=J023086O14;Oryzabase=13013;Expression=AK100403;TENOR=Os01t0897200-02;KEGG=Os01t0897200-02 (EC:3.1.27.1)
Chr01	irgsp1_rep	five_prime_UTR	38993740	38993801	.	-	.	Parent=Os01t0897200-02
Chr01	irgsp1_rep	CDS	38993507	38993730	.	-	0	Parent=Os01t0897200-02
Chr01	irgsp1_rep	CDS	38993328	38993356	.	-	1	Parent=Os01t0897200-02
Chr01	irgsp1_rep	CDS	38993114	38993187	.	-	2	Parent=Os01t0897200-02
Chr01	irgsp1_rep	CDS	38992866	38992967	.	-	0	Parent=Os01t0897200-02
Chr01	irgsp1_rep	CDS	38992477	38992572	.	-	0	Parent=Os01t0897200-02
Chr01	irgsp1_rep	CDS	38992103	38992264	.	-	0	Parent=Os01t0897200-02
Chr01	irgsp1_rep	CDS	38991447	38991543	.	-	0	Parent=Os01t0897200-02
Chr01	irgsp1_rep	CDS	38991286	38991356	.	-	2	Parent=Os01t0897200-02
Chr01	irgsp1_rep	three_prime_UTR	38990982	38991285	.	-	.	Parent=Os01t0897200-02
Chr01	irgsp1_rep	mRNA	38991071	38993773	.	-	.	ID=Os01t0897200-04;Name=Os01t0897200-04;Locus_id=Os01g0897200;CGSNL Gene Symbol=RNS2;CGSNL Gene Name=RIBONUCLEASE 2;Oryzabase Gene Symbol Synonym(s)=OsRNS2;Oryzabase Gene Name Synonym(s)=RNase 2;Note=Similar to Ribonuclease 2 precursor (EC 3.1.27.1).;Transcript_evidence=AK121862 (DDBJ%2C Best hit);ORF_evidence=B6TGK1 (UniProt);GO=Molecular Function: RNA binding (GO:0003723),Molecular Function: ribonuclease T2 activity (GO:0033897);InterPro=Ribonuclease T2 (IPR001568),Ribonuclease T2%2C active site (IPR018188);NIAS_FLcDNA=J033103A19;Oryzabase=13013;Expression=AK121862;TENOR=Os01t0897200-04;KEGG=Os01t0897200-04 (EC:3.1.27.1)
Chr01	irgsp1_rep	five_prime_UTR	38993731	38993773	.	-	.	Parent=Os01t0897200-04
Chr01	irgsp1_rep	CDS	38993507	38993730	.	-	0	Parent=Os01t0897200-04
Chr01	irgsp1_rep	CDS	38993328	38993356	.	-	1	Parent=Os01t0897200-04
Chr01	irgsp1_rep	CDS	38993114	38993187	.	-	2	Parent=Os01t0897200-04
Chr01	irgsp1_rep	CDS	38992866	38992967	.	-	0	Parent=Os01t0897200-04
Chr01	irgsp1_rep	CDS	38992477	38992572	.	-	0	Parent=Os01t0897200-04
Chr01	irgsp1_rep	CDS	38992103	38992264	.	-	0	Parent=Os01t0897200-04
Chr01	irgsp1_rep	CDS	38991447	38991543	.	-	0	Parent=Os01t0897200-04
Chr01	irgsp1_rep	CDS	38991286	38991356	.	-	2	Parent=Os01t0897200-04
Chr01	irgsp1_rep	three_prime_UTR	38991071	38991285	.	-	.	Parent=Os01t0897200-04
Chr01	irgsp1_rep	mRNA	38994476	38997470	.	-	.	ID=Os01t0897300-01;Name=Os01t0897300-01;Locus_id=Os01g0897300;CGSNL Gene Symbol=RNS6;CGSNL Gene Name=RIBONUCLEASE 6;Oryzabase Gene Symbol Synonym(s)=OsRNS6;Oryzabase Gene Name Synonym(s)=RNase 6;Note=Similar to Ribonuclease 2.;Transcript_evidence=AK106167 (DDBJ%2C Best hit);ORF_evidence=B6TDK4 (UniProt);GO=Molecular Function: RNA binding (GO:0003723),Molecular Function: ribonuclease T2 activity (GO:0033897);InterPro=Ribonuclease T2 (IPR001568),Ribonuclease T2%2C active site (IPR018188);NIAS_FLcDNA=001-208-B08;Oryzabase=13018;TENOR=Os01t0897300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	38997410	38997470	.	-	.	Parent=Os01t0897300-01
Chr01	irgsp1_rep	CDS	38997189	38997409	.	-	0	Parent=Os01t0897300-01
Chr01	irgsp1_rep	CDS	38997063	38997091	.	-	1	Parent=Os01t0897300-01
Chr01	irgsp1_rep	CDS	38996898	38996971	.	-	2	Parent=Os01t0897300-01
Chr01	irgsp1_rep	CDS	38996647	38996748	.	-	0	Parent=Os01t0897300-01
Chr01	irgsp1_rep	CDS	38996526	38996529	.	-	0	Parent=Os01t0897300-01
Chr01	irgsp1_rep	CDS	38996009	38996100	.	-	2	Parent=Os01t0897300-01
Chr01	irgsp1_rep	CDS	38995662	38995823	.	-	0	Parent=Os01t0897300-01
Chr01	irgsp1_rep	CDS	38995200	38995287	.	-	0	Parent=Os01t0897300-01
Chr01	irgsp1_rep	CDS	38994755	38994819	.	-	2	Parent=Os01t0897300-01
Chr01	irgsp1_rep	three_prime_UTR	38994476	38994754	.	-	.	Parent=Os01t0897300-01
Chr01	irgsp1_rep	mRNA	38994554	38997439	.	-	.	ID=Os01t0897300-02;Name=Os01t0897300-02;Locus_id=Os01g0897300;CGSNL Gene Symbol=RNS6;CGSNL Gene Name=RIBONUCLEASE 6;Oryzabase Gene Symbol Synonym(s)=OsRNS6;Oryzabase Gene Name Synonym(s)=RNase 6;Note=Ribonuclease T2 family protein.;Transcript_evidence=AK061032 (DDBJ%2C Best hit);ORF_evidence=B7EZ16 (UniProt);GO=Molecular Function: RNA binding (GO:0003723),Molecular Function: ribonuclease T2 activity (GO:0033897);InterPro=Ribonuclease T2 (IPR001568),Ribonuclease T2%2C active site (IPR018188);NIAS_FLcDNA=006-204-H06;Oryzabase=13018;Expression=AK061032;TENOR=Os01t0897300-02;KEGG=Os01t0897300-02
Chr01	irgsp1_rep	five_prime_UTR	38997410	38997439	.	-	.	Parent=Os01t0897300-02
Chr01	irgsp1_rep	CDS	38997339	38997409	.	-	0	Parent=Os01t0897300-02
Chr01	irgsp1_rep	CDS	38997189	38997275	.	-	1	Parent=Os01t0897300-02
Chr01	irgsp1_rep	CDS	38997063	38997091	.	-	1	Parent=Os01t0897300-02
Chr01	irgsp1_rep	CDS	38996856	38996971	.	-	2	Parent=Os01t0897300-02
Chr01	irgsp1_rep	CDS	38996647	38996748	.	-	0	Parent=Os01t0897300-02
Chr01	irgsp1_rep	CDS	38996526	38996529	.	-	0	Parent=Os01t0897300-02
Chr01	irgsp1_rep	CDS	38996009	38996100	.	-	2	Parent=Os01t0897300-02
Chr01	irgsp1_rep	CDS	38995662	38995823	.	-	0	Parent=Os01t0897300-02
Chr01	irgsp1_rep	CDS	38995200	38995287	.	-	0	Parent=Os01t0897300-02
Chr01	irgsp1_rep	CDS	38994755	38994819	.	-	2	Parent=Os01t0897300-02
Chr01	irgsp1_rep	three_prime_UTR	38994554	38994754	.	-	.	Parent=Os01t0897300-02
Chr01	irgsp1_rep	mRNA	39002131	39002742	.	+	.	ID=Os01t0897500-01;Name=Os01t0897500-01;Locus_id=Os01g0897500;Oryzabase Gene Symbol Synonym(s)=ppr564%2C PPR564;Oryzabase Gene Name Synonym(s)=pentatricopeptide repeat 564;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK058596 (DDBJ%2C Best hit);ORF_evidence=A0JBX0 (UniProt);GO=Molecular Function: hydrolase activity%2C acting on acid anhydrides (GO:0016817);InterPro=Pentatricopeptide repeat (IPR002885),Ku%2C C-terminal (IPR014893);NIAS_FLcDNA=001-017-H03;Oryzabase=20151;Expression=AK058596;TENOR=Os01t0897500-01;KEGG=Os01t0897500-01
Chr01	irgsp1_rep	five_prime_UTR	39002131	39002132	.	+	.	Parent=Os01t0897500-01
Chr01	irgsp1_rep	CDS	39002133	39002459	.	+	0	Parent=Os01t0897500-01
Chr01	irgsp1_rep	three_prime_UTR	39002460	39002742	.	+	.	Parent=Os01t0897500-01
Chr01	irgsp1_rep	mRNA	39002231	39004439	.	+	.	ID=Os01t0897500-02;Name=Os01t0897500-02;Locus_id=Os01g0897500;Oryzabase Gene Symbol Synonym(s)=ppr564%2C PPR564;Oryzabase Gene Name Synonym(s)=pentatricopeptide repeat 564;Note=Similar to Os01g67210-like protein (Fragment).;Transcript_evidence=AK287711 (DDBJ%2C Best hit);ORF_evidence=A0JBX0 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J065133E04;Oryzabase=20151;TENOR=Os01t0897500-02;KEGG=Os01t0897500-02
Chr01	irgsp1_rep	five_prime_UTR	39002231	39002231	.	+	.	Parent=Os01t0897500-02
Chr01	irgsp1_rep	CDS	39002232	39002459	.	+	0	Parent=Os01t0897500-02
Chr01	irgsp1_rep	three_prime_UTR	39002460	39002776	.	+	.	Parent=Os01t0897500-02
Chr01	irgsp1_rep	three_prime_UTR	39003819	39004439	.	+	.	Parent=Os01t0897500-02
Chr01	irgsp1_rep	mRNA	39004988	39009954	.	+	.	ID=Os01t0897600-01;Name=Os01t0897600-01;Locus_id=Os01g0897600;CGSNL Gene Symbol=BGLU4;CGSNL Gene Name=BETA-GLUCOSIDASE 4;Oryzabase Gene Symbol Synonym(s)=Os1bglu4%2C Os1Bglu4%2C Os1BGlu4;Oryzabase Gene Name Synonym(s)=beta-glucosidase 4;Note=Glycoside hydrolase%2C family 1 protein.;Transcript_evidence=AK243365 (DDBJ%2C Best hit);ORF_evidence=Q5N863 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: cellulose catabolic process (GO:0030245),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: beta-glucosidase activity (GO:0008422),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C family 1%2C beta-glucosidase (IPR017736),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 1%2C active site (IPR018120);NIAS_FLcDNA=J100061O18;Oryzabase=12078;TENOR=Os01t0897600-01;KEGG=Os01t0897600-01
Chr01	irgsp1_rep	five_prime_UTR	39004988	39005088	.	+	.	Parent=Os01t0897600-01
Chr01	irgsp1_rep	CDS	39005089	39005175	.	+	0	Parent=Os01t0897600-01
Chr01	irgsp1_rep	CDS	39005975	39006041	.	+	0	Parent=Os01t0897600-01
Chr01	irgsp1_rep	CDS	39006118	39006176	.	+	2	Parent=Os01t0897600-01
Chr01	irgsp1_rep	CDS	39006377	39006452	.	+	0	Parent=Os01t0897600-01
Chr01	irgsp1_rep	CDS	39006597	39006671	.	+	2	Parent=Os01t0897600-01
Chr01	irgsp1_rep	CDS	39006748	39006835	.	+	2	Parent=Os01t0897600-01
Chr01	irgsp1_rep	CDS	39007002	39007227	.	+	1	Parent=Os01t0897600-01
Chr01	irgsp1_rep	CDS	39007430	39007545	.	+	0	Parent=Os01t0897600-01
Chr01	irgsp1_rep	CDS	39007913	39008124	.	+	1	Parent=Os01t0897600-01
Chr01	irgsp1_rep	CDS	39008623	39008657	.	+	2	Parent=Os01t0897600-01
Chr01	irgsp1_rep	CDS	39008746	39008848	.	+	0	Parent=Os01t0897600-01
Chr01	irgsp1_rep	CDS	39009386	39009494	.	+	2	Parent=Os01t0897600-01
Chr01	irgsp1_rep	CDS	39009579	39009777	.	+	1	Parent=Os01t0897600-01
Chr01	irgsp1_rep	three_prime_UTR	39009778	39009954	.	+	.	Parent=Os01t0897600-01
Chr01	irgsp1_rep	mRNA	39013826	39017951	.	-	.	ID=Os01t0897700-01;Name=Os01t0897700-01;Locus_id=Os01g0897700;RAP-DB Gene Symbol Synonym(s)=OsFH1;RAP-DB Gene Name Synonym(s)=Formin homology 1;Oryzabase Gene Symbol Synonym(s)=OsFH1%2C FH1;Oryzabase Gene Name Synonym(s)=Formin homology 1%2C type I Formin%2C forming family protein 1%2C FH2 protein 1%2C FH2 domain protein 1;Note=Putative type I Formin%2C Regulation of root-hair elongation;Transcript_evidence=AK061290 (truncated),Inferred from literature;ORF_evidence=Q8S0F0;InterPro=Formin%2C FH2 domain superfamily (IPR042201),Formin%2C FH2 domain (IPR015425);NIAS_FLcDNA=006-301-A05 (truncated);Manual Curation=July 30%2C 2020;Literature_PMID=23334469;Oryzabase=12268;Expression=AK061290;TENOR=Os01t0897700-01;KEGG=Os01t0897700-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=plasma membrane (GO:0005886)
Chr01	irgsp1_rep	five_prime_UTR	39017796	39017951	.	-	.	Parent=Os01t0897700-01
Chr01	irgsp1_rep	CDS	39016195	39017795	.	-	0	Parent=Os01t0897700-01
Chr01	irgsp1_rep	CDS	39015900	39016105	.	-	1	Parent=Os01t0897700-01
Chr01	irgsp1_rep	CDS	39015061	39015308	.	-	2	Parent=Os01t0897700-01
Chr01	irgsp1_rep	CDS	39014143	39014970	.	-	0	Parent=Os01t0897700-01
Chr01	irgsp1_rep	three_prime_UTR	39013826	39014142	.	-	.	Parent=Os01t0897700-01
Chr01	irgsp1_rep	mRNA	39025353	39035049	.	-	.	ID=Os01t0897800-01;Name=Os01t0897800-01;Locus_id=Os01g0897800;CGSNL Gene Symbol=RAD21;CGSNL Gene Name=RAD21 PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsRad21%2C OsRAD21-1;Oryzabase Gene Name Synonym(s)=Rad21 protein;Note=Rad21/Rec8 like protein%2C C-terminal domain containing protein.;Transcript_evidence=AK072812 (DDBJ%2C Best hit);ORF_evidence=Q7XYH6 (UniProt);GO=Cellular Component: nuclear Chromosome (GO:0000228),Molecular Function: protein binding (GO:0005515);InterPro=Rad21/Rec8-like protein%2C C-terminal%2C eukaryotic (IPR006909),Rad21/Rec8-like protein%2C N-terminal (IPR006910),Rad21/Rec8-like protein%2C C-terminal (IPR023093);NIAS_FLcDNA=J023142N24;Oryzabase=6883;Expression=AK072812;TENOR=Os01t0897800-01;KEGG=Os01t0897800-01
Chr01	irgsp1_rep	five_prime_UTR	39034621	39035049	.	-	.	Parent=Os01t0897800-01
Chr01	irgsp1_rep	CDS	39034497	39034620	.	-	0	Parent=Os01t0897800-01
Chr01	irgsp1_rep	CDS	39031280	39031538	.	-	2	Parent=Os01t0897800-01
Chr01	irgsp1_rep	CDS	39031102	39031196	.	-	1	Parent=Os01t0897800-01
Chr01	irgsp1_rep	CDS	39030954	39031003	.	-	2	Parent=Os01t0897800-01
Chr01	irgsp1_rep	CDS	39030350	39030399	.	-	0	Parent=Os01t0897800-01
Chr01	irgsp1_rep	CDS	39029176	39029951	.	-	1	Parent=Os01t0897800-01
Chr01	irgsp1_rep	CDS	39028699	39029082	.	-	2	Parent=Os01t0897800-01
Chr01	irgsp1_rep	CDS	39028473	39028617	.	-	2	Parent=Os01t0897800-01
Chr01	irgsp1_rep	CDS	39028069	39028205	.	-	1	Parent=Os01t0897800-01
Chr01	irgsp1_rep	CDS	39027117	39027892	.	-	2	Parent=Os01t0897800-01
Chr01	irgsp1_rep	CDS	39026924	39026957	.	-	0	Parent=Os01t0897800-01
Chr01	irgsp1_rep	CDS	39026270	39026378	.	-	2	Parent=Os01t0897800-01
Chr01	irgsp1_rep	CDS	39026051	39026180	.	-	1	Parent=Os01t0897800-01
Chr01	irgsp1_rep	CDS	39025670	39025768	.	-	0	Parent=Os01t0897800-01
Chr01	irgsp1_rep	three_prime_UTR	39025353	39025669	.	-	.	Parent=Os01t0897800-01
Chr01	irgsp1_rep	mRNA	39028951	39035025	.	-	.	ID=Os01t0897800-02;Name=Os01t0897800-02;Locus_id=Os01g0897800;CGSNL Gene Symbol=RAD21;CGSNL Gene Name=RAD21 PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsRad21%2C OsRAD21-1;Oryzabase Gene Name Synonym(s)=Rad21 protein;Note=Similar to Rad21/Rec8-like protein.;Transcript_evidence=AK072409 (DDBJ%2C Best hit);ORF_evidence=Q7XYH6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Rad21/Rec8-like protein%2C N-terminal (IPR006910);NIAS_FLcDNA=J023083F05;Oryzabase=6883;TENOR=Os01t0897800-02
Chr01	irgsp1_rep	five_prime_UTR	39034621	39035025	.	-	.	Parent=Os01t0897800-02
Chr01	irgsp1_rep	CDS	39034497	39034620	.	-	0	Parent=Os01t0897800-02
Chr01	irgsp1_rep	CDS	39031280	39031538	.	-	2	Parent=Os01t0897800-02
Chr01	irgsp1_rep	CDS	39031102	39031196	.	-	1	Parent=Os01t0897800-02
Chr01	irgsp1_rep	CDS	39030954	39031003	.	-	2	Parent=Os01t0897800-02
Chr01	irgsp1_rep	CDS	39030350	39030399	.	-	0	Parent=Os01t0897800-02
Chr01	irgsp1_rep	CDS	39029176	39029951	.	-	1	Parent=Os01t0897800-02
Chr01	irgsp1_rep	CDS	39028951	39029082	.	-	2	Parent=Os01t0897800-02
Chr01	irgsp1_rep	mRNA	39025403	39035025	.	-	.	ID=Os01t0897800-03;Name=Os01t0897800-03;Locus_id=Os01g0897800;CGSNL Gene Symbol=RAD21;CGSNL Gene Name=RAD21 PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsRad21%2C OsRAD21-1;Oryzabase Gene Name Synonym(s)=Rad21 protein;Note=Rad21/Rec8 like protein%2C C-terminal domain containing protein.;Transcript_evidence=AK099099 (DDBJ%2C Best hit);ORF_evidence=Q7XYH6 (UniProt);GO=Cellular Component: nuclear Chromosome (GO:0000228),Molecular Function: protein binding (GO:0005515);InterPro=Rad21/Rec8-like protein%2C C-terminal%2C eukaryotic (IPR006909),Rad21/Rec8-like protein%2C N-terminal (IPR006910),Rad21/Rec8-like protein%2C C-terminal (IPR023093);NIAS_FLcDNA=J023023M14;Oryzabase=6883;Expression=AK099099;TENOR=Os01t0897800-03;KEGG=Os01t0897800-03
Chr01	irgsp1_rep	five_prime_UTR	39034621	39035025	.	-	.	Parent=Os01t0897800-03
Chr01	irgsp1_rep	CDS	39034497	39034620	.	-	0	Parent=Os01t0897800-03
Chr01	irgsp1_rep	CDS	39031280	39031538	.	-	2	Parent=Os01t0897800-03
Chr01	irgsp1_rep	CDS	39031102	39031196	.	-	1	Parent=Os01t0897800-03
Chr01	irgsp1_rep	CDS	39030954	39031003	.	-	2	Parent=Os01t0897800-03
Chr01	irgsp1_rep	CDS	39030350	39030399	.	-	0	Parent=Os01t0897800-03
Chr01	irgsp1_rep	CDS	39029176	39029951	.	-	1	Parent=Os01t0897800-03
Chr01	irgsp1_rep	CDS	39028699	39029082	.	-	2	Parent=Os01t0897800-03
Chr01	irgsp1_rep	CDS	39028473	39028617	.	-	2	Parent=Os01t0897800-03
Chr01	irgsp1_rep	CDS	39028069	39028205	.	-	1	Parent=Os01t0897800-03
Chr01	irgsp1_rep	CDS	39027117	39027892	.	-	2	Parent=Os01t0897800-03
Chr01	irgsp1_rep	CDS	39026924	39026957	.	-	0	Parent=Os01t0897800-03
Chr01	irgsp1_rep	CDS	39026270	39026378	.	-	2	Parent=Os01t0897800-03
Chr01	irgsp1_rep	CDS	39026051	39026180	.	-	1	Parent=Os01t0897800-03
Chr01	irgsp1_rep	CDS	39025670	39025768	.	-	0	Parent=Os01t0897800-03
Chr01	irgsp1_rep	three_prime_UTR	39025403	39025669	.	-	.	Parent=Os01t0897800-03
Chr01	irgsp1_rep	mRNA	39025299	39029531	.	-	.	ID=Os01t0897800-04;Name=Os01t0897800-04;Locus_id=Os01g0897800;CGSNL Gene Symbol=RAD21;CGSNL Gene Name=RAD21 PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsRad21%2C OsRAD21-1;Oryzabase Gene Name Synonym(s)=Rad21 protein;Note=Similar to Rad21/Rec8-like protein.;Transcript_evidence=AK060771 (DDBJ%2C Best hit);ORF_evidence=Q6WG80 (UniProt);GO=Cellular Component: nuclear Chromosome (GO:0000228);InterPro=Rad21/Rec8-like protein%2C C-terminal%2C eukaryotic (IPR006909),Rad21/Rec8-like protein%2C C-terminal (IPR023093);NIAS_FLcDNA=001-033-B04;Oryzabase=6883;Expression=AK060771;TENOR=Os01t0897800-04;KEGG=Os01t0897800-04
Chr01	irgsp1_rep	five_prime_UTR	39029531	39029531	.	-	.	Parent=Os01t0897800-04
Chr01	irgsp1_rep	CDS	39029176	39029530	.	-	0	Parent=Os01t0897800-04
Chr01	irgsp1_rep	CDS	39028699	39029082	.	-	2	Parent=Os01t0897800-04
Chr01	irgsp1_rep	CDS	39028473	39028617	.	-	2	Parent=Os01t0897800-04
Chr01	irgsp1_rep	CDS	39028069	39028205	.	-	1	Parent=Os01t0897800-04
Chr01	irgsp1_rep	CDS	39027117	39027892	.	-	2	Parent=Os01t0897800-04
Chr01	irgsp1_rep	CDS	39026924	39026957	.	-	0	Parent=Os01t0897800-04
Chr01	irgsp1_rep	CDS	39026270	39026378	.	-	2	Parent=Os01t0897800-04
Chr01	irgsp1_rep	CDS	39026051	39026180	.	-	1	Parent=Os01t0897800-04
Chr01	irgsp1_rep	CDS	39025670	39025768	.	-	0	Parent=Os01t0897800-04
Chr01	irgsp1_rep	three_prime_UTR	39025299	39025669	.	-	.	Parent=Os01t0897800-04
Chr01	irgsp1_rep	mRNA	39052287	39058529	.	-	.	ID=Os01t0898300-01;Name=Os01t0898300-01;Locus_id=Os01g0898300;RAP-DB Gene Symbol Synonym(s)=OsSPR1;RAP-DB Gene Name Synonym(s)=Oryza sativa short postembryonic roots 1;Oryzabase Gene Name Synonym(s)=SRL2-like gene%2C semi-rolled leaf 2-like gene;Note=Mitochondrial protein%2C Root development and iron homeostasis;Transcript_evidence=AK103766;ORF_evidence=Q5N857;GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033143H20;Manual Curation=May 10%2C 2011;Literature_PMID=21039568;Oryzabase=20948;Expression=AK103766;TENOR=Os01t0898300-01;KEGG=Os01t0898300-01
Chr01	irgsp1_rep	five_prime_UTR	39058270	39058529	.	-	.	Parent=Os01t0898300-01
Chr01	irgsp1_rep	CDS	39058135	39058269	.	-	0	Parent=Os01t0898300-01
Chr01	irgsp1_rep	CDS	39057890	39057964	.	-	0	Parent=Os01t0898300-01
Chr01	irgsp1_rep	CDS	39057474	39057589	.	-	0	Parent=Os01t0898300-01
Chr01	irgsp1_rep	CDS	39057276	39057390	.	-	1	Parent=Os01t0898300-01
Chr01	irgsp1_rep	CDS	39057065	39057193	.	-	0	Parent=Os01t0898300-01
Chr01	irgsp1_rep	CDS	39056686	39056733	.	-	0	Parent=Os01t0898300-01
Chr01	irgsp1_rep	CDS	39056224	39056381	.	-	0	Parent=Os01t0898300-01
Chr01	irgsp1_rep	CDS	39055945	39056141	.	-	1	Parent=Os01t0898300-01
Chr01	irgsp1_rep	CDS	39055537	39055829	.	-	2	Parent=Os01t0898300-01
Chr01	irgsp1_rep	CDS	39055297	39055449	.	-	0	Parent=Os01t0898300-01
Chr01	irgsp1_rep	CDS	39054851	39055210	.	-	0	Parent=Os01t0898300-01
Chr01	irgsp1_rep	CDS	39054606	39054755	.	-	0	Parent=Os01t0898300-01
Chr01	irgsp1_rep	CDS	39054176	39054251	.	-	0	Parent=Os01t0898300-01
Chr01	irgsp1_rep	CDS	39053814	39053941	.	-	2	Parent=Os01t0898300-01
Chr01	irgsp1_rep	CDS	39053515	39053715	.	-	0	Parent=Os01t0898300-01
Chr01	irgsp1_rep	CDS	39053276	39053413	.	-	0	Parent=Os01t0898300-01
Chr01	irgsp1_rep	CDS	39053046	39053177	.	-	0	Parent=Os01t0898300-01
Chr01	irgsp1_rep	CDS	39052742	39052933	.	-	0	Parent=Os01t0898300-01
Chr01	irgsp1_rep	CDS	39052503	39052649	.	-	0	Parent=Os01t0898300-01
Chr01	irgsp1_rep	three_prime_UTR	39052287	39052502	.	-	.	Parent=Os01t0898300-01
Chr01	irgsp1_rep	mRNA	39052287	39055586	.	-	.	ID=Os01t0898300-02;Name=Os01t0898300-02;Locus_id=Os01g0898300;Oryzabase Gene Name Synonym(s)=SRL2-like gene%2C semi-rolled leaf 2-like gene;Note=Hypothetical conserved gene.;Transcript_evidence=AK105381 (DDBJ%2C Best hit);ORF_evidence=B9EVD1 (UniProt);NIAS_FLcDNA=001-121-B04;Oryzabase=20948;Expression=AK105381;TENOR=Os01t0898300-02;KEGG=Os01t0898300-02
Chr01	irgsp1_rep	five_prime_UTR	39055585	39055586	.	-	.	Parent=Os01t0898300-02
Chr01	irgsp1_rep	CDS	39055537	39055584	.	-	0	Parent=Os01t0898300-02
Chr01	irgsp1_rep	CDS	39055297	39055449	.	-	0	Parent=Os01t0898300-02
Chr01	irgsp1_rep	CDS	39054851	39055210	.	-	0	Parent=Os01t0898300-02
Chr01	irgsp1_rep	CDS	39054606	39054755	.	-	0	Parent=Os01t0898300-02
Chr01	irgsp1_rep	CDS	39054176	39054251	.	-	0	Parent=Os01t0898300-02
Chr01	irgsp1_rep	CDS	39053814	39053941	.	-	2	Parent=Os01t0898300-02
Chr01	irgsp1_rep	CDS	39053515	39053715	.	-	0	Parent=Os01t0898300-02
Chr01	irgsp1_rep	CDS	39053276	39053413	.	-	0	Parent=Os01t0898300-02
Chr01	irgsp1_rep	CDS	39053046	39053177	.	-	0	Parent=Os01t0898300-02
Chr01	irgsp1_rep	CDS	39052742	39052933	.	-	0	Parent=Os01t0898300-02
Chr01	irgsp1_rep	CDS	39052503	39052649	.	-	0	Parent=Os01t0898300-02
Chr01	irgsp1_rep	three_prime_UTR	39052287	39052502	.	-	.	Parent=Os01t0898300-02
Chr01	irgsp1_rep	mRNA	39063700	39065530	.	+	.	ID=Os01t0898400-01;Name=Os01t0898400-01;Locus_id=Os01g0898400;Note=Conserved hypothetical protein.;Transcript_evidence=AK240683 (DDBJ%2C Best hit);ORF_evidence=NP_001045093.2 (RefSeq);NIAS_FLcDNA=J043001N02;TENOR=Os01t0898400-01;KEGG=Os01t0898400-01
Chr01	irgsp1_rep	five_prime_UTR	39063700	39063710	.	+	.	Parent=Os01t0898400-01
Chr01	irgsp1_rep	CDS	39063711	39063765	.	+	0	Parent=Os01t0898400-01
Chr01	irgsp1_rep	CDS	39063848	39064132	.	+	2	Parent=Os01t0898400-01
Chr01	irgsp1_rep	CDS	39064253	39064335	.	+	2	Parent=Os01t0898400-01
Chr01	irgsp1_rep	CDS	39064729	39064816	.	+	0	Parent=Os01t0898400-01
Chr01	irgsp1_rep	CDS	39065154	39065257	.	+	2	Parent=Os01t0898400-01
Chr01	irgsp1_rep	three_prime_UTR	39065258	39065530	.	+	.	Parent=Os01t0898400-01
Chr01	irgsp1_rep	mRNA	39066177	39068629	.	+	.	ID=Os01t0898500-01;Name=Os01t0898500-01;Locus_id=Os01g0898500;Oryzabase Gene Symbol Synonym(s)=OsEnS-20%2C OspPLAIIalpha%2C pPLAIIalpha%2C PAT2%2C PAT;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 20%2C Patatin-related phospholipase A II alpha%2C patatin-like protein 2%2C patatin-like protein;Note=Similar to Patatin (Fragment).;Transcript_evidence=AK106563 (DDBJ%2C Best hit);ORF_evidence=Q29VI1 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: metabolic process (GO:0008152);InterPro=Patatin/Phospholipase A2-related (IPR002641),Acyl transferase/acyl hydrolase/lysophospholipase (IPR016035);NIAS_FLcDNA=002-110-C08;Oryzabase=18360;Expression=AK106563;TENOR=Os01t0898500-01;KEGG=Os01t0898500-01
Chr01	irgsp1_rep	five_prime_UTR	39066177	39066223	.	+	.	Parent=Os01t0898500-01
Chr01	irgsp1_rep	CDS	39066224	39066352	.	+	0	Parent=Os01t0898500-01
Chr01	irgsp1_rep	CDS	39066592	39066773	.	+	0	Parent=Os01t0898500-01
Chr01	irgsp1_rep	CDS	39066988	39067186	.	+	1	Parent=Os01t0898500-01
Chr01	irgsp1_rep	CDS	39067273	39067434	.	+	0	Parent=Os01t0898500-01
Chr01	irgsp1_rep	CDS	39067661	39067963	.	+	0	Parent=Os01t0898500-01
Chr01	irgsp1_rep	CDS	39068084	39068344	.	+	0	Parent=Os01t0898500-01
Chr01	irgsp1_rep	three_prime_UTR	39068345	39068629	.	+	.	Parent=Os01t0898500-01
Chr01	irgsp1_rep	mRNA	39070132	39072668	.	-	.	ID=Os01t0898600-01;Name=Os01t0898600-01;Locus_id=Os01g0898600;Note=Conserved hypothetical protein.;Transcript_evidence=AK062514 (DDBJ%2C Best hit);ORF_evidence=B8A7Q6 (UniProt);NIAS_FLcDNA=001-104-C05;Expression=AK062514;TENOR=Os01t0898600-01;KEGG=Os01t0898600-01
Chr01	irgsp1_rep	five_prime_UTR	39072610	39072668	.	-	.	Parent=Os01t0898600-01
Chr01	irgsp1_rep	CDS	39072439	39072609	.	-	0	Parent=Os01t0898600-01
Chr01	irgsp1_rep	CDS	39070261	39070443	.	-	0	Parent=Os01t0898600-01
Chr01	irgsp1_rep	three_prime_UTR	39070132	39070260	.	-	.	Parent=Os01t0898600-01
Chr01	irgsp1_rep	mRNA	39079600	39082185	.	+	.	ID=Os01t0898800-00;Name=Os01t0898800-00;Locus_id=Os01g0898800;Note=Protein of unknown function DUF1685 domain containing protein.;Transcript_evidence=EU966284 (DDBJ);ORF_evidence=B9EVD3 (UniProt);InterPro=Protein of unknown function DUF1685 (IPR012881);TENOR=Os01t0898800-00;KEGG=Os01t0898800-00
Chr01	irgsp1_rep	five_prime_UTR	39079600	39079601	.	+	.	Parent=Os01t0898800-00
Chr01	irgsp1_rep	CDS	39079602	39080001	.	+	0	Parent=Os01t0898800-00
Chr01	irgsp1_rep	CDS	39081725	39081803	.	+	2	Parent=Os01t0898800-00
Chr01	irgsp1_rep	CDS	39081867	39081867	.	+	1	Parent=Os01t0898800-00
Chr01	irgsp1_rep	three_prime_UTR	39081868	39082185	.	+	.	Parent=Os01t0898800-00
Chr01	irgsp1_rep	mRNA	39085081	39091029	.	+	.	ID=Os01t0898900-01;Name=Os01t0898900-01;Locus_id=Os01g0898900;Note=Nucleotide-sugar transporter family protein.;Transcript_evidence=AK120093 (DDBJ%2C Best hit);ORF_evidence=B6UBN6 (UniProt);GO=Biological Process: carbohydrate transport (GO:0008643),Cellular Component: Golgi membrane (GO:0000139),Cellular Component: integral to membrane (GO:0016021),Molecular Function: sugar:hydrogen symporter activity (GO:0005351);InterPro=Nucleotide-sugar transporter (IPR007271),UDP/CMP-sugar transporter (IPR021189);NIAS_FLcDNA=J013021H10;Expression=AK120093;TENOR=Os01t0898900-01;KEGG=Os01t0898900-01
Chr01	irgsp1_rep	five_prime_UTR	39085081	39085277	.	+	.	Parent=Os01t0898900-01
Chr01	irgsp1_rep	five_prime_UTR	39085415	39085463	.	+	.	Parent=Os01t0898900-01
Chr01	irgsp1_rep	CDS	39085464	39085631	.	+	0	Parent=Os01t0898900-01
Chr01	irgsp1_rep	CDS	39086348	39086464	.	+	0	Parent=Os01t0898900-01
Chr01	irgsp1_rep	CDS	39086691	39086747	.	+	0	Parent=Os01t0898900-01
Chr01	irgsp1_rep	CDS	39087081	39087158	.	+	0	Parent=Os01t0898900-01
Chr01	irgsp1_rep	CDS	39087294	39087338	.	+	0	Parent=Os01t0898900-01
Chr01	irgsp1_rep	CDS	39087613	39087672	.	+	0	Parent=Os01t0898900-01
Chr01	irgsp1_rep	CDS	39087890	39088012	.	+	0	Parent=Os01t0898900-01
Chr01	irgsp1_rep	CDS	39088591	39088668	.	+	0	Parent=Os01t0898900-01
Chr01	irgsp1_rep	CDS	39088797	39088866	.	+	0	Parent=Os01t0898900-01
Chr01	irgsp1_rep	CDS	39089353	39089460	.	+	2	Parent=Os01t0898900-01
Chr01	irgsp1_rep	CDS	39089703	39089836	.	+	2	Parent=Os01t0898900-01
Chr01	irgsp1_rep	CDS	39089918	39089988	.	+	0	Parent=Os01t0898900-01
Chr01	irgsp1_rep	CDS	39090125	39090173	.	+	1	Parent=Os01t0898900-01
Chr01	irgsp1_rep	CDS	39090248	39090298	.	+	0	Parent=Os01t0898900-01
Chr01	irgsp1_rep	three_prime_UTR	39090299	39090313	.	+	.	Parent=Os01t0898900-01
Chr01	irgsp1_rep	three_prime_UTR	39090447	39091029	.	+	.	Parent=Os01t0898900-01
Chr01	irgsp1_rep	mRNA	39091734	39095307	.	-	.	ID=Os01t0899000-01;Name=Os01t0899000-01;Locus_id=Os01g0899000;CGSNL Gene Symbol=RLCK52;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 52;Oryzabase Gene Symbol Synonym(s)=OsRLCK52;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 52;Note=Similar to Pti1 kinase-like protein.;Transcript_evidence=AK121843 (DDBJ%2C Best hit);ORF_evidence=B4FW61 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Tyrosine-protein kinase%2C active site (IPR008266),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J033101F17;Oryzabase=18769;Expression=AK121843;TENOR=Os01t0899000-01;KEGG=Os01t0899000-01
Chr01	irgsp1_rep	five_prime_UTR	39095180	39095307	.	-	.	Parent=Os01t0899000-01
Chr01	irgsp1_rep	five_prime_UTR	39094317	39094344	.	-	.	Parent=Os01t0899000-01
Chr01	irgsp1_rep	CDS	39094217	39094316	.	-	0	Parent=Os01t0899000-01
Chr01	irgsp1_rep	CDS	39093836	39094086	.	-	2	Parent=Os01t0899000-01
Chr01	irgsp1_rep	CDS	39093604	39093730	.	-	0	Parent=Os01t0899000-01
Chr01	irgsp1_rep	CDS	39093192	39093465	.	-	2	Parent=Os01t0899000-01
Chr01	irgsp1_rep	CDS	39092682	39092814	.	-	1	Parent=Os01t0899000-01
Chr01	irgsp1_rep	CDS	39092405	39092491	.	-	0	Parent=Os01t0899000-01
Chr01	irgsp1_rep	CDS	39092159	39092296	.	-	0	Parent=Os01t0899000-01
Chr01	irgsp1_rep	three_prime_UTR	39091734	39092158	.	-	.	Parent=Os01t0899000-01
Chr01	irgsp1_rep	mRNA	39101061	39101498	.	+	.	ID=Os01t0899100-00;Name=Os01t0899100-00;Locus_id=Os01g0899100;Oryzabase Gene Symbol Synonym(s)=RMP6;Oryzabase Gene Name Synonym(s)=rice microspore-preferred 6;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5N853 (UniProt);InterPro=Proteinase inhibitor I29%2C cathepsin propeptide (IPR013201);Oryzabase=21548;TENOR=Os01t0899100-00;KEGG=Os01t0899100-00
Chr01	irgsp1_rep	CDS	39101061	39101091	.	+	0	Parent=Os01t0899100-00
Chr01	irgsp1_rep	CDS	39101176	39101498	.	+	2	Parent=Os01t0899100-00
Chr01	irgsp1_rep	mRNA	39102277	39103501	.	-	.	ID=Os01t0899200-01;Name=Os01t0899200-01;Locus_id=Os01g0899200;Note=Similar to dehydration-responsive family protein.;Transcript_evidence=AK108736 (DDBJ%2C Best hit);ORF_evidence=XP_002880030.1 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Protein of unknown function DUF248%2C methyltransferase putative (IPR004159);NIAS_FLcDNA=002-150-D09;TENOR=Os01t0899200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	39103501	39103501	.	-	.	Parent=Os01t0899200-01
Chr01	irgsp1_rep	CDS	39103319	39103500	.	-	0	Parent=Os01t0899200-01
Chr01	irgsp1_rep	CDS	39103141	39103218	.	-	1	Parent=Os01t0899200-01
Chr01	irgsp1_rep	CDS	39102727	39102946	.	-	1	Parent=Os01t0899200-01
Chr01	irgsp1_rep	three_prime_UTR	39102277	39102726	.	-	.	Parent=Os01t0899200-01
Chr01	irgsp1_rep	mRNA	39110685	39110934	.	-	.	ID=Os01t0899275-00;Name=Os01t0899275-00;Locus_id=Os01g0899275;Note=Similar to ATP synthase F0 subunit 9.;Transcript_evidence=AF390542 (DDBJ);ORF_evidence=YP_514662.1 (RefSeq);GO=Biological Process: ATP hydrolysis coupled proton transport (GO:0015991),Cellular Component: proton-transporting two-sector ATPase complex%2C proton-transporting domain (GO:0033177),Molecular Function: hydrogen ion transmembrane transporter activity (GO:0015078);InterPro=ATPase%2C F0/V0 complex%2C subunit C (IPR002379);TENOR=Os01t0899275-00;KEGG=Os01t0899275-00
Chr01	irgsp1_rep	five_prime_UTR	39110931	39110934	.	-	.	Parent=Os01t0899275-00
Chr01	irgsp1_rep	CDS	39110685	39110930	.	-	0	Parent=Os01t0899275-00
Chr01	irgsp1_rep	mRNA	39114759	39115037	.	-	.	ID=Os01t0899350-00;Name=Os01t0899350-00;Locus_id=Os01g0899350;Note=Similar to ATP synthase F0 subunit 9.;Transcript_evidence=X54621 (DDBJ);ORF_evidence=YP_514662.1 (RefSeq);GO=Biological Process: ATP synthesis coupled proton transport (GO:0015986),Biological Process: ATP hydrolysis coupled proton transport (GO:0015991),Cellular Component: proton-transporting two-sector ATPase complex%2C proton-transporting domain (GO:0033177),Cellular Component: proton-transporting ATP synthase complex%2C coupling factor F(o) (GO:0045263),Molecular Function: hydrogen ion transmembrane transporter activity (GO:0015078);InterPro=ATPase%2C F0 complex%2C subunit C (IPR000454),ATPase%2C F0/V0 complex%2C subunit C (IPR002379);TENOR=Os01t0899350-00;KEGG=Os01t0899350-00
Chr01	irgsp1_rep	CDS	39114759	39115037	.	-	0	Parent=Os01t0899350-00
Chr01	irgsp1_rep	mRNA	39117079	39117320	.	+	.	ID=Os01t0899387-00;Name=Os01t0899387-00;Locus_id=Os01g0899387;Oryzabase Gene Name Synonym(s)=callose synthase;Note=Conserved hypothetical protein.;Transcript_evidence=EU940710 (DDBJ);ORF_evidence=Q2QSM4 (UniProt);Oryzabase=22149;TENOR=Os01t0899387-00
Chr01	irgsp1_rep	CDS	39117079	39117213	.	+	0	Parent=Os01t0899387-00
Chr01	irgsp1_rep	three_prime_UTR	39117214	39117320	.	+	.	Parent=Os01t0899387-00
Chr01	irgsp1_rep	mRNA	39121870	39122187	.	+	.	ID=Os01t0899425-00;Name=Os01t0899425-00;Locus_id=Os01g0899425;Note=Similar to ribulose 1%2C5-bisphosphate carboxylase/oxygenase large subunit.;Transcript_evidence=P93292 (UniProt);ORF_evidence=YP_001876585.1 (RefSeq);GO=Biological Process: carbon fixation (GO:0015977),Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem I (GO:0009522),Cellular Component: plastid (GO:0009536),Cellular Component: thylakoid (GO:0009579),Cellular Component: integral to membrane (GO:0016021),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: ribulose-bisphosphate carboxylase activity (GO:0016984);InterPro=Ribulose bisphosphate carboxylase%2C large subunit%2C C-terminal (IPR000685),Photosystem I PsaA/PsaB (IPR001280),Photosystem I PsaA/PsaB%2C conserved site (IPR020586),Ribulose bisphosphate carboxylase%2C large chain%2C active site (IPR020878);TENOR=Os01t0899425-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	39121870	39122187	.	+	0	Parent=Os01t0899425-00
Chr01	irgsp1_rep	mRNA	39131909	39134770	.	-	.	ID=Os01t0899500-01;Name=Os01t0899500-01;Locus_id=Os01g0899500;Note=Hypothetical conserved gene.;Transcript_evidence=AK064490 (DDBJ%2C Best hit);ORF_evidence=B9EVD7 (UniProt);NIAS_FLcDNA=002-111-C01;Expression=AK064490;TENOR=Os01t0899500-01;KEGG=Os01t0899500-01
Chr01	irgsp1_rep	five_prime_UTR	39134582	39134770	.	-	.	Parent=Os01t0899500-01
Chr01	irgsp1_rep	five_prime_UTR	39133532	39133565	.	-	.	Parent=Os01t0899500-01
Chr01	irgsp1_rep	CDS	39133455	39133531	.	-	0	Parent=Os01t0899500-01
Chr01	irgsp1_rep	CDS	39133117	39133372	.	-	1	Parent=Os01t0899500-01
Chr01	irgsp1_rep	three_prime_UTR	39132807	39133116	.	-	.	Parent=Os01t0899500-01
Chr01	irgsp1_rep	three_prime_UTR	39132655	39132719	.	-	.	Parent=Os01t0899500-01
Chr01	irgsp1_rep	three_prime_UTR	39131909	39132465	.	-	.	Parent=Os01t0899500-01
Chr01	irgsp1_rep	mRNA	39130113	39134767	.	-	.	ID=Os01t0899500-02;Name=Os01t0899500-02;Locus_id=Os01g0899500;Note=FMN-binding split barrel-related domain containing protein.;Transcript_evidence=AK099921 (DDBJ%2C Best hit);ORF_evidence=B9EVD7 (UniProt);InterPro=FMN-binding split barrel-related (IPR009002);NIAS_FLcDNA=J013116L24;Expression=AK099921;TENOR=Os01t0899500-02;KEGG=Os01t0899500-02
Chr01	irgsp1_rep	five_prime_UTR	39134582	39134767	.	-	.	Parent=Os01t0899500-02
Chr01	irgsp1_rep	five_prime_UTR	39133532	39133565	.	-	.	Parent=Os01t0899500-02
Chr01	irgsp1_rep	CDS	39133455	39133531	.	-	0	Parent=Os01t0899500-02
Chr01	irgsp1_rep	CDS	39133147	39133372	.	-	1	Parent=Os01t0899500-02
Chr01	irgsp1_rep	CDS	39132807	39132909	.	-	0	Parent=Os01t0899500-02
Chr01	irgsp1_rep	CDS	39132655	39132719	.	-	2	Parent=Os01t0899500-02
Chr01	irgsp1_rep	CDS	39132346	39132465	.	-	0	Parent=Os01t0899500-02
Chr01	irgsp1_rep	CDS	39132142	39132237	.	-	0	Parent=Os01t0899500-02
Chr01	irgsp1_rep	CDS	39131342	39131498	.	-	0	Parent=Os01t0899500-02
Chr01	irgsp1_rep	CDS	39131204	39131254	.	-	2	Parent=Os01t0899500-02
Chr01	irgsp1_rep	CDS	39131014	39131123	.	-	2	Parent=Os01t0899500-02
Chr01	irgsp1_rep	CDS	39130682	39130834	.	-	0	Parent=Os01t0899500-02
Chr01	irgsp1_rep	CDS	39130467	39130562	.	-	0	Parent=Os01t0899500-02
Chr01	irgsp1_rep	CDS	39130277	39130369	.	-	0	Parent=Os01t0899500-02
Chr01	irgsp1_rep	three_prime_UTR	39130113	39130276	.	-	.	Parent=Os01t0899500-02
Chr01	irgsp1_rep	mRNA	39136937	39139380	.	-	.	ID=Os01t0899700-01;Name=Os01t0899700-01;Locus_id=Os01g0899700;Oryzabase Gene Name Synonym(s)=Extensin family protein;Note=Pollen Ole e 1 allergen and extensin domain containing protein.;Transcript_evidence=AK110796 (DDBJ%2C Best hit);ORF_evidence=A2WXZ6 (UniProt);InterPro=Pollen Ole e 1 allergen/extensin (IPR006041);NIAS_FLcDNA=002-171-D09;Oryzabase=21949;Expression=AK110796;TENOR=Os01t0899700-01;KEGG=Os01t0899700-01
Chr01	irgsp1_rep	five_prime_UTR	39139325	39139380	.	-	.	Parent=Os01t0899700-01
Chr01	irgsp1_rep	CDS	39139096	39139324	.	-	0	Parent=Os01t0899700-01
Chr01	irgsp1_rep	CDS	39137437	39138446	.	-	2	Parent=Os01t0899700-01
Chr01	irgsp1_rep	three_prime_UTR	39137412	39137436	.	-	.	Parent=Os01t0899700-01
Chr01	irgsp1_rep	three_prime_UTR	39136937	39137236	.	-	.	Parent=Os01t0899700-01
Chr01	irgsp1_rep	mRNA	39141130	39145472	.	-	.	ID=Os01t0899800-01;Name=Os01t0899800-01;Locus_id=Os01g0899800;CGSNL Gene Symbol=PLT5;CGSNL Gene Name=PLETHORA 5;Oryzabase Gene Symbol Synonym(s)=OsPLT5%2C AP2/EREBP5%2C AP2/EREBP#005%2C BBM3%2C OsBBM3%2C BBM1%2C OsBBM1;Oryzabase Gene Name Synonym(s)=Plethora 5%2C APETALA2/ethylene-responsive element binding protein 5%2C BABY BOOM3%2C BABY BOOM 3;Note=Pathogenesis-related transcriptional factor and ERF domain containing protein.;Transcript_evidence=AK240892 (DDBJ%2C Best hit);ORF_evidence=Q8LGQ3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J065030K10;Oryzabase=10468;TENOR=Os01t0899800-01;KEGG=Os01t0899800-01
Chr01	irgsp1_rep	five_prime_UTR	39145243	39145472	.	-	.	Parent=Os01t0899800-01
Chr01	irgsp1_rep	CDS	39145089	39145242	.	-	0	Parent=Os01t0899800-01
Chr01	irgsp1_rep	CDS	39144271	39144982	.	-	2	Parent=Os01t0899800-01
Chr01	irgsp1_rep	CDS	39143893	39143975	.	-	1	Parent=Os01t0899800-01
Chr01	irgsp1_rep	CDS	39143737	39143745	.	-	2	Parent=Os01t0899800-01
Chr01	irgsp1_rep	CDS	39143523	39143611	.	-	2	Parent=Os01t0899800-01
Chr01	irgsp1_rep	CDS	39143322	39143395	.	-	0	Parent=Os01t0899800-01
Chr01	irgsp1_rep	CDS	39143132	39143182	.	-	1	Parent=Os01t0899800-01
Chr01	irgsp1_rep	CDS	39142943	39143019	.	-	1	Parent=Os01t0899800-01
Chr01	irgsp1_rep	CDS	39141567	39142405	.	-	2	Parent=Os01t0899800-01
Chr01	irgsp1_rep	three_prime_UTR	39141130	39141566	.	-	.	Parent=Os01t0899800-01
Chr01	irgsp1_rep	mRNA	39162735	39165727	.	+	.	ID=Os01t0900200-01;Name=Os01t0900200-01;Locus_id=Os01g0900200;Note=Lipase%2C class 3 domain containing protein.;Transcript_evidence=AK071608 (DDBJ%2C Best hit);ORF_evidence=B8A7R3 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921);NIAS_FLcDNA=J023104H08;TENOR=Os01t0900200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	39162735	39162735	.	+	.	Parent=Os01t0900200-01
Chr01	irgsp1_rep	CDS	39162736	39162772	.	+	0	Parent=Os01t0900200-01
Chr01	irgsp1_rep	CDS	39163090	39163220	.	+	2	Parent=Os01t0900200-01
Chr01	irgsp1_rep	CDS	39163912	39164009	.	+	0	Parent=Os01t0900200-01
Chr01	irgsp1_rep	CDS	39164112	39164903	.	+	1	Parent=Os01t0900200-01
Chr01	irgsp1_rep	CDS	39165213	39165264	.	+	1	Parent=Os01t0900200-01
Chr01	irgsp1_rep	three_prime_UTR	39165265	39165727	.	+	.	Parent=Os01t0900200-01
Chr01	irgsp1_rep	mRNA	39177279	39178286	.	-	.	ID=Os01t0900300-00;Name=Os01t0900300-00;Locus_id=Os01g0900300;Note=Hypothetical protein.;Transcript_evidence=tplb0060j07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0900300-00
Chr01	irgsp1_rep	five_prime_UTR	39178285	39178286	.	-	.	Parent=Os01t0900300-00
Chr01	irgsp1_rep	CDS	39177279	39178284	.	-	0	Parent=Os01t0900300-00
Chr01	irgsp1_rep	mRNA	39177169	39178676	.	+	.	ID=Os01t0900400-01;Name=Os01t0900400-01;Locus_id=Os01g0900400;RAP-DB Gene Symbol Synonym(s)=EG1%2C eg1;RAP-DB Gene Name Synonym(s)=EXTRA GLUME 1%2C extra glume-1%2C extra glume 1%2C extra glume1;CGSNL Gene Symbol=EG1;CGSNL Gene Name=EXTRA GLUME 1;Oryzabase Gene Symbol Synonym(s)=eg1%2C GY1;Oryzabase Gene Name Synonym(s)=extra glume-1%2C extra glume 1%2C extra glume1%2C gaoyao1;Note=Putative triacylglycerol (TAG) lipase%2C Phospholipase A1%2C Specification of empty-glume identity%2C Regulation of spikelet development%2C Endogenous jasmonic acid (JA) biosynthesis;Transcript_evidence=Inferred from literature;ORF_evidence=Q8S1D9;GO=Biological Process: lipid metabolic process (GO:0006629);InterPro=Alpha/Beta hydrolase fold (IPR029058),Fungal lipase-like domain (IPR002921);NIAS_FLcDNA=J090082C03;Manual Curation=July 8%2C 2016;Literature_PMID=24647160,18980657;Oryzabase=480;TENOR=Os01t0900400-01;KEGG=Os01t0900400-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	39177169	39178476	.	+	0	Parent=Os01t0900400-01
Chr01	irgsp1_rep	three_prime_UTR	39178477	39178676	.	+	.	Parent=Os01t0900400-01
Chr01	irgsp1_rep	mRNA	39195620	39196972	.	+	.	ID=Os01t0900700-00;Name=Os01t0900700-00;Locus_id=Os01g0900700;Note=Similar to predicted protein.;Transcript_evidence=BT063553 (DDBJ);ORF_evidence=A2Q4Y5 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921);TENOR=Os01t0900700-00;KEGG=Os01t0900700-00
Chr01	irgsp1_rep	CDS	39195620	39196972	.	+	0	Parent=Os01t0900700-00
Chr01	irgsp1_rep	mRNA	39200106	39206627	.	-	.	ID=Os01t0900750-01;Name=Os01t0900750-01;Locus_id=Os01g0900750;Note=Hypothetical gene.;Transcript_evidence=AK289044 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090092F18;TENOR=Os01t0900750-01;KEGG=Os01t0900750-01
Chr01	irgsp1_rep	five_prime_UTR	39204972	39206627	.	-	.	Parent=Os01t0900750-01
Chr01	irgsp1_rep	CDS	39204732	39204971	.	-	0	Parent=Os01t0900750-01
Chr01	irgsp1_rep	three_prime_UTR	39200106	39204731	.	-	.	Parent=Os01t0900750-01
Chr01	irgsp1_rep	mRNA	39211307	39216467	.	+	.	ID=Os01t0900800-01;Name=Os01t0900800-01;Locus_id=Os01g0900800;Oryzabase Gene Symbol Synonym(s)=OsbHLH109%2C bHLH109;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 109;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=AK105713 (DDBJ%2C Best hit),AK068254 (DDBJ%2C Best hit);ORF_evidence=F1DKA1 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=001-201-E12,J013149F02;Oryzabase=15390;Expression=AK105713;TENOR=Os01t0900800-01;KEGG=Os01t0900800-01
Chr01	irgsp1_rep	five_prime_UTR	39211307	39211421	.	+	.	Parent=Os01t0900800-01
Chr01	irgsp1_rep	CDS	39211422	39211872	.	+	0	Parent=Os01t0900800-01
Chr01	irgsp1_rep	CDS	39214955	39215343	.	+	2	Parent=Os01t0900800-01
Chr01	irgsp1_rep	CDS	39215427	39215561	.	+	0	Parent=Os01t0900800-01
Chr01	irgsp1_rep	CDS	39215677	39215742	.	+	0	Parent=Os01t0900800-01
Chr01	irgsp1_rep	CDS	39215891	39215959	.	+	0	Parent=Os01t0900800-01
Chr01	irgsp1_rep	CDS	39216143	39216196	.	+	0	Parent=Os01t0900800-01
Chr01	irgsp1_rep	three_prime_UTR	39216197	39216467	.	+	.	Parent=Os01t0900800-01
Chr01	irgsp1_rep	mRNA	39212282	39215989	.	+	.	ID=Os01t0900800-02;Name=Os01t0900800-02;Locus_id=Os01g0900800;Oryzabase Gene Symbol Synonym(s)=OsbHLH109%2C bHLH109;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 109;Note=Similar to BHLH transcription factor (Fragment).;Transcript_evidence=AK121411 (DDBJ%2C Best hit);ORF_evidence=F1DKA1 (UniProt);NIAS_FLcDNA=J023132O19;Oryzabase=15390;TENOR=Os01t0900800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	39212282	39214943	.	+	.	Parent=Os01t0900800-02
Chr01	irgsp1_rep	CDS	39214944	39215254	.	+	0	Parent=Os01t0900800-02
Chr01	irgsp1_rep	CDS	39215480	39215696	.	+	1	Parent=Os01t0900800-02
Chr01	irgsp1_rep	three_prime_UTR	39215697	39215989	.	+	.	Parent=Os01t0900800-02
Chr01	irgsp1_rep	mRNA	39216719	39218757	.	-	.	ID=Os01t0900900-01;Name=Os01t0900900-01;Locus_id=Os01g0900900;Note=Ovarian tumour%2C otubain domain containing protein.;Transcript_evidence=AK120577 (DDBJ%2C Best hit);ORF_evidence=NP_001078307.1 (RefSeq);InterPro=Ovarian tumour%2C otubain (IPR003323);NIAS_FLcDNA=J013135D06;Expression=AK120577;TENOR=Os01t0900900-01;KEGG=Os01t0900900-01
Chr01	irgsp1_rep	five_prime_UTR	39218654	39218757	.	-	.	Parent=Os01t0900900-01
Chr01	irgsp1_rep	CDS	39218617	39218653	.	-	0	Parent=Os01t0900900-01
Chr01	irgsp1_rep	CDS	39217772	39217893	.	-	2	Parent=Os01t0900900-01
Chr01	irgsp1_rep	CDS	39217644	39217684	.	-	0	Parent=Os01t0900900-01
Chr01	irgsp1_rep	CDS	39217248	39217346	.	-	1	Parent=Os01t0900900-01
Chr01	irgsp1_rep	CDS	39217008	39217172	.	-	1	Parent=Os01t0900900-01
Chr01	irgsp1_rep	CDS	39216867	39216903	.	-	1	Parent=Os01t0900900-01
Chr01	irgsp1_rep	three_prime_UTR	39216719	39216866	.	-	.	Parent=Os01t0900900-01
Chr01	irgsp1_rep	mRNA	39222279	39226573	.	-	.	ID=Os01t0901000-01;Name=Os01t0901000-01;Locus_id=Os01g0901000;Oryzabase Gene Symbol Synonym(s)=OsPUB28;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 28%2C U-box protein 28;Note=Similar to Arm repeat-containing protein.;Transcript_evidence=AK101205 (DDBJ%2C Best hit);ORF_evidence=NP_174112.1 (RefSeq);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),U box domain (IPR003613),Armadillo-like helical (IPR011989),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033030O21;Oryzabase=17820;Expression=AK101205;TENOR=Os01t0901000-01;KEGG=Os01t0901000-01
Chr01	irgsp1_rep	five_prime_UTR	39226308	39226573	.	-	.	Parent=Os01t0901000-01
Chr01	irgsp1_rep	five_prime_UTR	39225417	39225443	.	-	.	Parent=Os01t0901000-01
Chr01	irgsp1_rep	CDS	39225366	39225416	.	-	0	Parent=Os01t0901000-01
Chr01	irgsp1_rep	CDS	39225030	39225215	.	-	0	Parent=Os01t0901000-01
Chr01	irgsp1_rep	CDS	39224821	39224928	.	-	0	Parent=Os01t0901000-01
Chr01	irgsp1_rep	CDS	39223471	39224678	.	-	0	Parent=Os01t0901000-01
Chr01	irgsp1_rep	CDS	39222507	39223356	.	-	1	Parent=Os01t0901000-01
Chr01	irgsp1_rep	three_prime_UTR	39222279	39222506	.	-	.	Parent=Os01t0901000-01
Chr01	irgsp1_rep	mRNA	39222268	39223536	.	-	.	ID=Os01t0901000-02;Name=Os01t0901000-02;Locus_id=Os01g0901000;Oryzabase Gene Symbol Synonym(s)=OsPUB28;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 28%2C U-box protein 28;Note=Similar to predicted protein.;Transcript_evidence=AK065658 (DDBJ%2C Best hit);ORF_evidence=B9EVE3 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013038N12;Oryzabase=17820;Expression=AK065658;TENOR=Os01t0901000-02;KEGG=Os01t0901000-02
Chr01	irgsp1_rep	five_prime_UTR	39223536	39223536	.	-	.	Parent=Os01t0901000-02
Chr01	irgsp1_rep	CDS	39223471	39223535	.	-	0	Parent=Os01t0901000-02
Chr01	irgsp1_rep	CDS	39222507	39223356	.	-	1	Parent=Os01t0901000-02
Chr01	irgsp1_rep	three_prime_UTR	39222268	39222506	.	-	.	Parent=Os01t0901000-02
Chr01	irgsp1_rep	mRNA	39224137	39225456	.	+	.	ID=Os01t0901101-00;Name=Os01t0901101-00;Locus_id=Os01g0901101;Note=Non-protein coding transcript.;Transcript_evidence=BT084794 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0901101-00
Chr01	irgsp1_rep	exon	39224137	39224678	.	+	.	Parent=Os01t0901101-00
Chr01	irgsp1_rep	exon	39224821	39224920	.	+	.	Parent=Os01t0901101-00
Chr01	irgsp1_rep	exon	39225025	39225197	.	+	.	Parent=Os01t0901101-00
Chr01	irgsp1_rep	exon	39225342	39225456	.	+	.	Parent=Os01t0901101-00
Chr01	irgsp1_rep	mRNA	39238851	39243943	.	-	.	ID=Os01t0901200-01;Name=Os01t0901200-01;Locus_id=Os01g0901200;Oryzabase Gene Symbol Synonym(s)=RecA;Note=Similar to RecA protein (Fragment).;Transcript_evidence=AK103365 (DDBJ%2C Best hit);ORF_evidence=B6TNM4 (UniProt);GO=Biological Process: DNA metabolic process (GO:0006259),Biological Process: DNA repair (GO:0006281),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: DNA binding (GO:0003677),Molecular Function: single-stranded DNA binding (GO:0003697),Molecular Function: ATP binding (GO:0005524),Molecular Function: DNA-dependent ATPase activity (GO:0008094),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),DNA recombination and repair protein RecA (IPR013765),DNA recombination/repair protein RecA%2C conserved site (IPR020584),DNA recombination/repair protein RecA%2C monomer-monomer interface (IPR020587),DNA recombination/repair protein RecA/RadB%2C ATP-binding domain (IPR020588),DNA recombination and repair protein RecA%2C C-terminal (IPR023400);NIAS_FLcDNA=J033126O05;Oryzabase=21285;Expression=AK103365;TENOR=Os01t0901200-01;KEGG=Os01t0901200-01
Chr01	irgsp1_rep	five_prime_UTR	39243841	39243943	.	-	.	Parent=Os01t0901200-01
Chr01	irgsp1_rep	CDS	39243763	39243840	.	-	0	Parent=Os01t0901200-01
Chr01	irgsp1_rep	CDS	39242709	39242766	.	-	0	Parent=Os01t0901200-01
Chr01	irgsp1_rep	CDS	39242249	39242466	.	-	2	Parent=Os01t0901200-01
Chr01	irgsp1_rep	CDS	39241942	39242029	.	-	0	Parent=Os01t0901200-01
Chr01	irgsp1_rep	CDS	39240872	39241044	.	-	2	Parent=Os01t0901200-01
Chr01	irgsp1_rep	CDS	39240511	39240657	.	-	0	Parent=Os01t0901200-01
Chr01	irgsp1_rep	CDS	39239917	39240051	.	-	0	Parent=Os01t0901200-01
Chr01	irgsp1_rep	CDS	39239216	39239608	.	-	0	Parent=Os01t0901200-01
Chr01	irgsp1_rep	three_prime_UTR	39238851	39239215	.	-	.	Parent=Os01t0901200-01
Chr01	irgsp1_rep	mRNA	39244622	39247128	.	+	.	ID=Os01t0901300-01;Name=Os01t0901300-01;Locus_id=Os01g0901300;Oryzabase Gene Name Synonym(s)=a homologue of OsGGP;Note=Similar to VTC2-like protein.;Transcript_evidence=AK100274 (DDBJ%2C Best hit);ORF_evidence=A4ZRE3 (UniProt);NIAS_FLcDNA=J023072P03;Oryzabase=19914;TENOR=Os01t0901300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	39244622	39245450	.	+	.	Parent=Os01t0901300-01
Chr01	irgsp1_rep	CDS	39245451	39245546	.	+	0	Parent=Os01t0901300-01
Chr01	irgsp1_rep	CDS	39245642	39245701	.	+	0	Parent=Os01t0901300-01
Chr01	irgsp1_rep	CDS	39245792	39246079	.	+	0	Parent=Os01t0901300-01
Chr01	irgsp1_rep	three_prime_UTR	39246080	39246314	.	+	.	Parent=Os01t0901300-01
Chr01	irgsp1_rep	three_prime_UTR	39246395	39246643	.	+	.	Parent=Os01t0901300-01
Chr01	irgsp1_rep	three_prime_UTR	39246753	39247128	.	+	.	Parent=Os01t0901300-01
Chr01	irgsp1_rep	mRNA	39252983	39256753	.	+	.	ID=Os01t0901500-01;Name=Os01t0901500-01;Locus_id=Os01g0901500;Oryzabase Gene Symbol Synonym(s)=OsACS5%2C ACS5%2C 4ACS5%2C Os4ACS5;Oryzabase Gene Name Synonym(s)=acyl-CoA synthetase 5;Note=Similar to 4-coumarate--CoA ligase-like 5.;Transcript_evidence=AK241767 (DDBJ%2C Best hit);ORF_evidence=Q7F1X5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873),AMP-binding%2C conserved site (IPR020845);NIAS_FLcDNA=J065205F10;Oryzabase=15670;TENOR=Os01t0901500-01;KEGG=Os01t0901500-01
Chr01	irgsp1_rep	five_prime_UTR	39252983	39253002	.	+	.	Parent=Os01t0901500-01
Chr01	irgsp1_rep	CDS	39253003	39254061	.	+	0	Parent=Os01t0901500-01
Chr01	irgsp1_rep	CDS	39254205	39254392	.	+	0	Parent=Os01t0901500-01
Chr01	irgsp1_rep	CDS	39255377	39255441	.	+	1	Parent=Os01t0901500-01
Chr01	irgsp1_rep	CDS	39255525	39255541	.	+	2	Parent=Os01t0901500-01
Chr01	irgsp1_rep	three_prime_UTR	39255542	39255706	.	+	.	Parent=Os01t0901500-01
Chr01	irgsp1_rep	three_prime_UTR	39255796	39255898	.	+	.	Parent=Os01t0901500-01
Chr01	irgsp1_rep	three_prime_UTR	39256357	39256753	.	+	.	Parent=Os01t0901500-01
Chr01	irgsp1_rep	mRNA	39254244	39256494	.	-	.	ID=Os01t0901550-00;Name=Os01t0901550-00;Locus_id=Os01g0901550;Note=Hypothetical gene.;Transcript_evidence=BT017473 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0901550-00;KEGG=Os01t0901550-00
Chr01	irgsp1_rep	five_prime_UTR	39256369	39256494	.	-	.	Parent=Os01t0901550-00
Chr01	irgsp1_rep	five_prime_UTR	39255880	39255909	.	-	.	Parent=Os01t0901550-00
Chr01	irgsp1_rep	CDS	39255796	39255879	.	-	0	Parent=Os01t0901550-00
Chr01	irgsp1_rep	CDS	39255643	39255706	.	-	0	Parent=Os01t0901550-00
Chr01	irgsp1_rep	CDS	39255452	39255528	.	-	2	Parent=Os01t0901550-00
Chr01	irgsp1_rep	three_prime_UTR	39255377	39255451	.	-	.	Parent=Os01t0901550-00
Chr01	irgsp1_rep	three_prime_UTR	39254244	39254392	.	-	.	Parent=Os01t0901550-00
Chr01	irgsp1_rep	mRNA	39257838	39261362	.	+	.	ID=Os01t0901600-01;Name=Os01t0901600-01;Locus_id=Os01g0901600;Oryzabase Gene Symbol Synonym(s)=OsACS6%2C ACS6%2C 4ACS6%2C Os4ACS6;Oryzabase Gene Name Synonym(s)=acyl-CoA synthetase 6;Note=Similar to 4-coumarate--CoA ligase-like 6.;Transcript_evidence=AK241420 (DDBJ%2C Best hit);ORF_evidence=Q8RU95 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873),AMP-binding%2C conserved site (IPR020845);NIAS_FLcDNA=J065161G03;Oryzabase=15671;TENOR=Os01t0901600-01;KEGG=Os01t0901600-01
Chr01	irgsp1_rep	five_prime_UTR	39257838	39257964	.	+	.	Parent=Os01t0901600-01
Chr01	irgsp1_rep	CDS	39257965	39259131	.	+	0	Parent=Os01t0901600-01
Chr01	irgsp1_rep	CDS	39259593	39259780	.	+	0	Parent=Os01t0901600-01
Chr01	irgsp1_rep	CDS	39260342	39260489	.	+	1	Parent=Os01t0901600-01
Chr01	irgsp1_rep	CDS	39260628	39260695	.	+	0	Parent=Os01t0901600-01
Chr01	irgsp1_rep	CDS	39260821	39260923	.	+	1	Parent=Os01t0901600-01
Chr01	irgsp1_rep	CDS	39261128	39261250	.	+	0	Parent=Os01t0901600-01
Chr01	irgsp1_rep	three_prime_UTR	39261251	39261362	.	+	.	Parent=Os01t0901600-01
Chr01	irgsp1_rep	mRNA	39259627	39261250	.	-	.	ID=Os01t0901650-00;Name=Os01t0901650-00;Locus_id=Os01g0901650;Note=Hypothetical gene.;Transcript_evidence=BT017473 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0901650-00
Chr01	irgsp1_rep	five_prime_UTR	39261123	39261250	.	-	.	Parent=Os01t0901650-00
Chr01	irgsp1_rep	five_prime_UTR	39260883	39260915	.	-	.	Parent=Os01t0901650-00
Chr01	irgsp1_rep	CDS	39260814	39260882	.	-	0	Parent=Os01t0901650-00
Chr01	irgsp1_rep	CDS	39260632	39260685	.	-	0	Parent=Os01t0901650-00
Chr01	irgsp1_rep	CDS	39260342	39260492	.	-	0	Parent=Os01t0901650-00
Chr01	irgsp1_rep	CDS	39259627	39259780	.	-	2	Parent=Os01t0901650-00
Chr01	irgsp1_rep	mRNA	39262881	39266565	.	+	.	ID=Os01t0901700-01;Name=Os01t0901700-01;Locus_id=Os01g0901700;Note=Similar to emb2421 (embryo defective 2421)%3B monooxygenase/ oxidoreductase.;Transcript_evidence=AK102777 (DDBJ%2C Best hit);ORF_evidence=NP_173844.2 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Monooxygenase%2C FAD-binding (IPR002938),Aromatic-ring hydroxylase-like (IPR003042);NIAS_FLcDNA=J033107I16;TENOR=Os01t0901700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	39262881	39262911	.	+	.	Parent=Os01t0901700-01
Chr01	irgsp1_rep	CDS	39262912	39263134	.	+	0	Parent=Os01t0901700-01
Chr01	irgsp1_rep	CDS	39263254	39263336	.	+	2	Parent=Os01t0901700-01
Chr01	irgsp1_rep	CDS	39263433	39263566	.	+	0	Parent=Os01t0901700-01
Chr01	irgsp1_rep	CDS	39263644	39264139	.	+	1	Parent=Os01t0901700-01
Chr01	irgsp1_rep	CDS	39264259	39264438	.	+	0	Parent=Os01t0901700-01
Chr01	irgsp1_rep	three_prime_UTR	39264439	39264747	.	+	.	Parent=Os01t0901700-01
Chr01	irgsp1_rep	three_prime_UTR	39264863	39265166	.	+	.	Parent=Os01t0901700-01
Chr01	irgsp1_rep	three_prime_UTR	39265320	39265539	.	+	.	Parent=Os01t0901700-01
Chr01	irgsp1_rep	three_prime_UTR	39265726	39265885	.	+	.	Parent=Os01t0901700-01
Chr01	irgsp1_rep	three_prime_UTR	39265974	39266565	.	+	.	Parent=Os01t0901700-01
Chr01	irgsp1_rep	mRNA	39267216	39269329	.	-	.	ID=Os01t0901800-01;Name=Os01t0901800-01;Locus_id=Os01g0901800;Note=Similar to acid phosphatase/vanadium-dependent haloperoxidase related.;Transcript_evidence=AK121605 (DDBJ%2C Best hit);ORF_evidence=B6SYG4 (UniProt);InterPro=Acid phosphatase/vanadium-dependent haloperoxidase-related (IPR003832);NIAS_FLcDNA=J033041O06;Expression=AK121605;TENOR=Os01t0901800-01;KEGG=Os01t0901800-01
Chr01	irgsp1_rep	five_prime_UTR	39269253	39269329	.	-	.	Parent=Os01t0901800-01
Chr01	irgsp1_rep	CDS	39269116	39269252	.	-	0	Parent=Os01t0901800-01
Chr01	irgsp1_rep	CDS	39268222	39268378	.	-	1	Parent=Os01t0901800-01
Chr01	irgsp1_rep	CDS	39267725	39267775	.	-	0	Parent=Os01t0901800-01
Chr01	irgsp1_rep	CDS	39267393	39267554	.	-	0	Parent=Os01t0901800-01
Chr01	irgsp1_rep	three_prime_UTR	39267216	39267392	.	-	.	Parent=Os01t0901800-01
Chr01	irgsp1_rep	mRNA	39266781	39269328	.	-	.	ID=Os01t0901800-02;Name=Os01t0901800-02;Locus_id=Os01g0901800;Note=Acid phosphatase/vanadium-dependent haloperoxidase related family protein.;Transcript_evidence=AK070266 (DDBJ%2C Best hit);ORF_evidence=B6SYG4 (UniProt);InterPro=Acid phosphatase/vanadium-dependent haloperoxidase-related (IPR003832);NIAS_FLcDNA=J023045G07;Expression=AK070266;TENOR=Os01t0901800-02;KEGG=Os01t0901800-02
Chr01	irgsp1_rep	five_prime_UTR	39269253	39269328	.	-	.	Parent=Os01t0901800-02
Chr01	irgsp1_rep	CDS	39269116	39269252	.	-	0	Parent=Os01t0901800-02
Chr01	irgsp1_rep	CDS	39268222	39268378	.	-	1	Parent=Os01t0901800-02
Chr01	irgsp1_rep	CDS	39267725	39267775	.	-	0	Parent=Os01t0901800-02
Chr01	irgsp1_rep	CDS	39267462	39267554	.	-	0	Parent=Os01t0901800-02
Chr01	irgsp1_rep	CDS	39267069	39267146	.	-	0	Parent=Os01t0901800-02
Chr01	irgsp1_rep	three_prime_UTR	39266781	39267068	.	-	.	Parent=Os01t0901800-02
Chr01	irgsp1_rep	mRNA	39270573	39274992	.	-	.	ID=Os01t0901900-01;Name=Os01t0901900-01;Locus_id=Os01g0901900;Note=S1%2C RNA binding domain containing protein.;Transcript_evidence=AK067661 (DDBJ%2C Best hit);ORF_evidence=D6QX33 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=Ribosomal protein S1%2C RNA-binding domain (IPR003029),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),RNA-binding domain%2C S1 (IPR022967);NIAS_FLcDNA=J013119G01;Expression=AK067661;TENOR=Os01t0901900-01;KEGG=Os01t0901900-01
Chr01	irgsp1_rep	five_prime_UTR	39274967	39274992	.	-	.	Parent=Os01t0901900-01
Chr01	irgsp1_rep	CDS	39274265	39274966	.	-	0	Parent=Os01t0901900-01
Chr01	irgsp1_rep	CDS	39273216	39273275	.	-	0	Parent=Os01t0901900-01
Chr01	irgsp1_rep	CDS	39273095	39273124	.	-	0	Parent=Os01t0901900-01
Chr01	irgsp1_rep	CDS	39272923	39272996	.	-	0	Parent=Os01t0901900-01
Chr01	irgsp1_rep	CDS	39272748	39272829	.	-	1	Parent=Os01t0901900-01
Chr01	irgsp1_rep	CDS	39272436	39272509	.	-	0	Parent=Os01t0901900-01
Chr01	irgsp1_rep	CDS	39272230	39272296	.	-	1	Parent=Os01t0901900-01
Chr01	irgsp1_rep	CDS	39271997	39272089	.	-	0	Parent=Os01t0901900-01
Chr01	irgsp1_rep	CDS	39271687	39271863	.	-	0	Parent=Os01t0901900-01
Chr01	irgsp1_rep	CDS	39271521	39271564	.	-	0	Parent=Os01t0901900-01
Chr01	irgsp1_rep	CDS	39271434	39271437	.	-	1	Parent=Os01t0901900-01
Chr01	irgsp1_rep	three_prime_UTR	39271286	39271433	.	-	.	Parent=Os01t0901900-01
Chr01	irgsp1_rep	three_prime_UTR	39270573	39271209	.	-	.	Parent=Os01t0901900-01
Chr01	irgsp1_rep	mRNA	39271015	39271670	.	+	.	ID=Os01t0901950-00;Name=Os01t0901950-00;Locus_id=Os01g0901950;Note=Non-protein coding transcript.;Transcript_evidence=CT828786 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os01t0901950-00
Chr01	irgsp1_rep	exon	39271015	39271670	.	+	.	Parent=Os01t0901950-00
Chr01	irgsp1_rep	mRNA	39275190	39283019	.	+	.	ID=Os01t0902000-01;Name=Os01t0902000-01;Locus_id=Os01g0902000;Note=Hypothetical protein.;Transcript_evidence=AK073128 (DDBJ%2C Best hit),AK101353 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033009H13,J033034P10;TENOR=Os01t0902000-01
Chr01	irgsp1_rep	five_prime_UTR	39275190	39275500	.	+	.	Parent=Os01t0902000-01
Chr01	irgsp1_rep	five_prime_UTR	39279705	39282392	.	+	.	Parent=Os01t0902000-01
Chr01	irgsp1_rep	CDS	39282393	39282716	.	+	0	Parent=Os01t0902000-01
Chr01	irgsp1_rep	three_prime_UTR	39282717	39283019	.	+	.	Parent=Os01t0902000-01
Chr01	irgsp1_rep	mRNA	39276426	39281147	.	-	.	ID=Os01t0902100-00;Name=Os01t0902100-00;Locus_id=Os01g0902100;CGSNL Gene Symbol=MRP2;CGSNL Gene Name=MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsABCC2%2C OsMRP2;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCC subgroup member 2%2C multidrug resistance-associated protein 2;Note=Similar to MRP-like ABC transporter.;Transcript_evidence=AK360758 (DDBJ);ORF_evidence=Q7FMW1 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);Oryzabase=11953;TENOR=Os01t0902100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	39279723	39281147	.	-	0	Parent=Os01t0902100-00
Chr01	irgsp1_rep	CDS	39279358	39279444	.	-	0	Parent=Os01t0902100-00
Chr01	irgsp1_rep	CDS	39278391	39278978	.	-	0	Parent=Os01t0902100-00
Chr01	irgsp1_rep	CDS	39278141	39278305	.	-	0	Parent=Os01t0902100-00
Chr01	irgsp1_rep	CDS	39277773	39278067	.	-	0	Parent=Os01t0902100-00
Chr01	irgsp1_rep	CDS	39276977	39277512	.	-	2	Parent=Os01t0902100-00
Chr01	irgsp1_rep	three_prime_UTR	39276966	39276976	.	-	.	Parent=Os01t0902100-00
Chr01	irgsp1_rep	three_prime_UTR	39276426	39276706	.	-	.	Parent=Os01t0902100-00
Chr01	irgsp1_rep	mRNA	39289364	39296595	.	+	.	ID=Os01t0902200-01;Name=Os01t0902200-01;Locus_id=Os01g0902200;Note=Peptidase M3A and M3B%2C thimet/oligopeptidase F domain containing protein.;Transcript_evidence=AK064934 (DDBJ%2C Best hit),AK064932 (DDBJ%2C Best hit);ORF_evidence=NP_564902.4 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: metalloendopeptidase activity (GO:0004222);InterPro=Peptidase M3A/M3B (IPR001567),Neurolysin/Thimet oligopeptidase%2C domain 2 (IPR024077),Metallopeptidase%2C catalytic domain (IPR024079),Neurolysin/Thimet oligopeptidase%2C N-terminal (IPR024080);NIAS_FLcDNA=J013000O23,J013000O11;TENOR=Os01t0902200-01
Chr01	irgsp1_rep	five_prime_UTR	39289364	39289453	.	+	.	Parent=Os01t0902200-01
Chr01	irgsp1_rep	CDS	39289454	39289574	.	+	0	Parent=Os01t0902200-01
Chr01	irgsp1_rep	CDS	39289925	39290046	.	+	2	Parent=Os01t0902200-01
Chr01	irgsp1_rep	CDS	39290391	39290554	.	+	0	Parent=Os01t0902200-01
Chr01	irgsp1_rep	CDS	39290978	39291068	.	+	1	Parent=Os01t0902200-01
Chr01	irgsp1_rep	CDS	39291668	39291847	.	+	0	Parent=Os01t0902200-01
Chr01	irgsp1_rep	CDS	39292096	39292173	.	+	0	Parent=Os01t0902200-01
Chr01	irgsp1_rep	CDS	39292319	39292399	.	+	0	Parent=Os01t0902200-01
Chr01	irgsp1_rep	CDS	39292751	39292843	.	+	0	Parent=Os01t0902200-01
Chr01	irgsp1_rep	CDS	39293062	39293142	.	+	0	Parent=Os01t0902200-01
Chr01	irgsp1_rep	CDS	39293240	39293402	.	+	0	Parent=Os01t0902200-01
Chr01	irgsp1_rep	CDS	39293519	39293639	.	+	2	Parent=Os01t0902200-01
Chr01	irgsp1_rep	CDS	39293924	39293996	.	+	1	Parent=Os01t0902200-01
Chr01	irgsp1_rep	CDS	39294269	39294376	.	+	0	Parent=Os01t0902200-01
Chr01	irgsp1_rep	CDS	39294663	39294760	.	+	0	Parent=Os01t0902200-01
Chr01	irgsp1_rep	CDS	39294847	39294892	.	+	1	Parent=Os01t0902200-01
Chr01	irgsp1_rep	CDS	39295255	39295351	.	+	0	Parent=Os01t0902200-01
Chr01	irgsp1_rep	CDS	39295681	39295754	.	+	2	Parent=Os01t0902200-01
Chr01	irgsp1_rep	CDS	39295833	39295937	.	+	0	Parent=Os01t0902200-01
Chr01	irgsp1_rep	CDS	39296025	39296105	.	+	0	Parent=Os01t0902200-01
Chr01	irgsp1_rep	CDS	39296187	39296297	.	+	0	Parent=Os01t0902200-01
Chr01	irgsp1_rep	three_prime_UTR	39296298	39296595	.	+	.	Parent=Os01t0902200-01
Chr01	irgsp1_rep	mRNA	39296976	39299837	.	-	.	ID=Os01t0902300-01;Name=Os01t0902300-01;Locus_id=Os01g0902300;Note=Alpha/beta hydrolase fold-3 domain containing protein.;Transcript_evidence=AK240641 (DDBJ%2C Best hit);ORF_evidence=Q0ZPV1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Lipase%2C GDXG%2C active site (IPR002168),Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=J013152C09_2;TENOR=Os01t0902300-01;KEGG=Os01t0902300-01
Chr01	irgsp1_rep	five_prime_UTR	39299543	39299837	.	-	.	Parent=Os01t0902300-01
Chr01	irgsp1_rep	CDS	39298851	39299542	.	-	0	Parent=Os01t0902300-01
Chr01	irgsp1_rep	CDS	39297278	39297818	.	-	1	Parent=Os01t0902300-01
Chr01	irgsp1_rep	three_prime_UTR	39296976	39297277	.	-	.	Parent=Os01t0902300-01
Chr01	irgsp1_rep	mRNA	39296978	39299837	.	-	.	ID=Os01t0902300-02;Name=Os01t0902300-02;Locus_id=Os01g0902300;Note=Similar to esterase.;Transcript_evidence=AK288510 (DDBJ%2C Best hit);ORF_evidence=NP_001147187.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Lipase%2C GDXG%2C active site (IPR002168),Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=J090042E18;TENOR=Os01t0902300-02;KEGG=Os01t0902300-02
Chr01	irgsp1_rep	five_prime_UTR	39299543	39299837	.	-	.	Parent=Os01t0902300-02
Chr01	irgsp1_rep	CDS	39298847	39299542	.	-	0	Parent=Os01t0902300-02
Chr01	irgsp1_rep	three_prime_UTR	39296978	39298846	.	-	.	Parent=Os01t0902300-02
Chr01	irgsp1_rep	mRNA	39307443	39310557	.	+	.	ID=Os01t0902700-01;Name=Os01t0902700-01;Locus_id=Os01g0902700;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Similar to Peptide transporter PTR2.;Transcript_evidence=AK242900 (DDBJ%2C Best hit);ORF_evidence=NP_001148128.1 (RefSeq);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J090081K18;Oryzabase=23641;TENOR=Os01t0902700-01;KEGG=Os01t0902700-01
Chr01	irgsp1_rep	five_prime_UTR	39307443	39307524	.	+	.	Parent=Os01t0902700-01
Chr01	irgsp1_rep	five_prime_UTR	39307600	39307621	.	+	.	Parent=Os01t0902700-01
Chr01	irgsp1_rep	CDS	39307622	39307724	.	+	0	Parent=Os01t0902700-01
Chr01	irgsp1_rep	CDS	39307826	39308570	.	+	2	Parent=Os01t0902700-01
Chr01	irgsp1_rep	CDS	39309476	39310301	.	+	1	Parent=Os01t0902700-01
Chr01	irgsp1_rep	three_prime_UTR	39310302	39310557	.	+	.	Parent=Os01t0902700-01
Chr01	irgsp1_rep	mRNA	39307848	39310293	.	-	.	ID=Os01t0902750-00;Name=Os01t0902750-00;Locus_id=Os01g0902750;Note=Hypothetical protein.;Transcript_evidence=tplb0038k08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0902750-00
Chr01	irgsp1_rep	five_prime_UTR	39310293	39310293	.	-	.	Parent=Os01t0902750-00
Chr01	irgsp1_rep	CDS	39309473	39310292	.	-	0	Parent=Os01t0902750-00
Chr01	irgsp1_rep	CDS	39307848	39308567	.	-	2	Parent=Os01t0902750-00
Chr01	irgsp1_rep	mRNA	39312496	39315691	.	+	.	ID=Os01t0902800-00;Name=Os01t0902800-00;Locus_id=Os01g0902800;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Similar to cDNA%2C clone: J090081K18%2C full insert sequence.;Transcript_evidence=ab initio prediction;ORF_evidence=B7F9S8 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);Oryzabase=23642;TENOR=Os01t0902800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	39312496	39312592	.	+	0	Parent=Os01t0902800-00
Chr01	irgsp1_rep	CDS	39312710	39312963	.	+	2	Parent=Os01t0902800-00
Chr01	irgsp1_rep	CDS	39313023	39313540	.	+	0	Parent=Os01t0902800-00
Chr01	irgsp1_rep	CDS	39314917	39315691	.	+	1	Parent=Os01t0902800-00
Chr01	irgsp1_rep	mRNA	39324296	39332524	.	-	.	ID=Os01t0903100-00;Name=Os01t0903100-00;Locus_id=Os01g0903100;Note=Conserved hypothetical protein.;Transcript_evidence=AK367029 (DDBJ);ORF_evidence=Q8RZ73 (UniProt);TENOR=Os01t0903100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	39331928	39332524	.	-	.	Parent=Os01t0903100-00
Chr01	irgsp1_rep	CDS	39331755	39331927	.	-	0	Parent=Os01t0903100-00
Chr01	irgsp1_rep	CDS	39324296	39324986	.	-	1	Parent=Os01t0903100-00
Chr01	irgsp1_rep	mRNA	39341598	39342417	.	+	.	ID=Os01t0903800-00;Name=Os01t0903800-00;Locus_id=Os01g0903800;Note=Similar to MADS-box transcription factor 21.;Transcript_evidence=AJ577375 (DDBJ);ORF_evidence=D3U2H6 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box (IPR002100);TENOR=Os01t0903800-00
Chr01	irgsp1_rep	five_prime_UTR	39341598	39341628	.	+	.	Parent=Os01t0903800-00
Chr01	irgsp1_rep	CDS	39341629	39341680	.	+	0	Parent=Os01t0903800-00
Chr01	irgsp1_rep	CDS	39342254	39342417	.	+	2	Parent=Os01t0903800-00
Chr01	irgsp1_rep	mRNA	39344823	39345073	.	+	.	ID=Os01t0903900-00;Name=Os01t0903900-00;Locus_id=Os01g0903900;Note=Hypothetical protein.;Transcript_evidence=BT083761 (DDBJ);ORF_evidence=GeneMark;TENOR=Os01t0903900-00
Chr01	irgsp1_rep	CDS	39344823	39345073	.	+	0	Parent=Os01t0903900-00
Chr01	irgsp1_rep	mRNA	39344943	39345206	.	-	.	ID=Os01t0904000-00;Name=Os01t0904000-00;Locus_id=Os01g0904000;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001067268.1 (RefSeq);TENOR=Os01t0904000-00
Chr01	irgsp1_rep	CDS	39344943	39345206	.	-	0	Parent=Os01t0904000-00
Chr01	irgsp1_rep	mRNA	39357530	39362871	.	-	.	ID=Os01t0904200-01;Name=Os01t0904200-01;Locus_id=Os01g0904200;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK068432 (DDBJ%2C Best hit);ORF_evidence=NP_001147487.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),ABC-1 (IPR004147),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J013153C13;Expression=AK068432;TENOR=Os01t0904200-01;KEGG=Os01t0904200-01
Chr01	irgsp1_rep	five_prime_UTR	39362655	39362871	.	-	.	Parent=Os01t0904200-01
Chr01	irgsp1_rep	CDS	39362535	39362654	.	-	0	Parent=Os01t0904200-01
Chr01	irgsp1_rep	CDS	39362281	39362409	.	-	0	Parent=Os01t0904200-01
Chr01	irgsp1_rep	CDS	39361825	39362019	.	-	0	Parent=Os01t0904200-01
Chr01	irgsp1_rep	CDS	39361609	39361656	.	-	0	Parent=Os01t0904200-01
Chr01	irgsp1_rep	CDS	39361387	39361515	.	-	0	Parent=Os01t0904200-01
Chr01	irgsp1_rep	CDS	39360707	39360834	.	-	0	Parent=Os01t0904200-01
Chr01	irgsp1_rep	CDS	39359791	39359901	.	-	1	Parent=Os01t0904200-01
Chr01	irgsp1_rep	CDS	39359225	39359334	.	-	1	Parent=Os01t0904200-01
Chr01	irgsp1_rep	CDS	39359029	39359146	.	-	2	Parent=Os01t0904200-01
Chr01	irgsp1_rep	CDS	39358250	39358403	.	-	1	Parent=Os01t0904200-01
Chr01	irgsp1_rep	CDS	39357902	39358046	.	-	0	Parent=Os01t0904200-01
Chr01	irgsp1_rep	CDS	39357697	39357773	.	-	2	Parent=Os01t0904200-01
Chr01	irgsp1_rep	three_prime_UTR	39357530	39357696	.	-	.	Parent=Os01t0904200-01
Chr01	irgsp1_rep	mRNA	39357593	39362775	.	-	.	ID=Os01t0904200-02;Name=Os01t0904200-02;Locus_id=Os01g0904200;Note=Similar to protein kinase.;Transcript_evidence=AK105007 (DDBJ%2C Best hit);ORF_evidence=NP_001147487.1 (RefSeq);InterPro=ABC-1 (IPR004147);NIAS_FLcDNA=001-006-F03;Expression=AK105007;TENOR=Os01t0904200-02;KEGG=Os01t0904200-02
Chr01	irgsp1_rep	five_prime_UTR	39362655	39362775	.	-	.	Parent=Os01t0904200-02
Chr01	irgsp1_rep	CDS	39362535	39362654	.	-	0	Parent=Os01t0904200-02
Chr01	irgsp1_rep	CDS	39362281	39362409	.	-	0	Parent=Os01t0904200-02
Chr01	irgsp1_rep	CDS	39361904	39362019	.	-	0	Parent=Os01t0904200-02
Chr01	irgsp1_rep	CDS	39361387	39361495	.	-	1	Parent=Os01t0904200-02
Chr01	irgsp1_rep	CDS	39360707	39360834	.	-	0	Parent=Os01t0904200-02
Chr01	irgsp1_rep	CDS	39359787	39359901	.	-	1	Parent=Os01t0904200-02
Chr01	irgsp1_rep	three_prime_UTR	39359768	39359786	.	-	.	Parent=Os01t0904200-02
Chr01	irgsp1_rep	three_prime_UTR	39359029	39359334	.	-	.	Parent=Os01t0904200-02
Chr01	irgsp1_rep	three_prime_UTR	39358250	39358403	.	-	.	Parent=Os01t0904200-02
Chr01	irgsp1_rep	three_prime_UTR	39357902	39358046	.	-	.	Parent=Os01t0904200-02
Chr01	irgsp1_rep	three_prime_UTR	39357593	39357773	.	-	.	Parent=Os01t0904200-02
Chr01	irgsp1_rep	mRNA	39363108	39365639	.	+	.	ID=Os01t0904300-01;Name=Os01t0904300-01;Locus_id=Os01g0904300;Note=Protein of unknown function DUF971 family protein.;Transcript_evidence=AK065762 (DDBJ%2C Best hit);ORF_evidence=A3A0N5 (UniProt);InterPro=Domain of unknown function%2C DUF971 (IPR010376);NIAS_FLcDNA=J013042H11;Expression=AK065762;TENOR=Os01t0904300-01;KEGG=Os01t0904300-01
Chr01	irgsp1_rep	five_prime_UTR	39363108	39363979	.	+	.	Parent=Os01t0904300-01
Chr01	irgsp1_rep	five_prime_UTR	39364112	39364395	.	+	.	Parent=Os01t0904300-01
Chr01	irgsp1_rep	CDS	39364396	39364533	.	+	0	Parent=Os01t0904300-01
Chr01	irgsp1_rep	CDS	39364870	39364934	.	+	0	Parent=Os01t0904300-01
Chr01	irgsp1_rep	CDS	39365124	39365271	.	+	1	Parent=Os01t0904300-01
Chr01	irgsp1_rep	three_prime_UTR	39365272	39365639	.	+	.	Parent=Os01t0904300-01
Chr01	irgsp1_rep	mRNA	39365920	39374228	.	-	.	ID=Os01t0904400-01;Name=Os01t0904400-01;Locus_id=Os01g0904400;Oryzabase Gene Symbol Synonym(s)=SMC2;Oryzabase Gene Name Synonym(s)=structural maintenance of Chromosomes protein 2;Note=Similar to Chromosome assembly protein homolog.;Transcript_evidence=AK103514 (DDBJ%2C Best hit);ORF_evidence=Q8GU55 (UniProt);GO=Biological Process: DNA repair (GO:0006281),Biological Process: DNA recombination (GO:0006310),Biological Process: sister Chromatid cohesion (GO:0007062),Biological Process: Chromosome condensation (GO:0030261),Biological Process: Chromosome organization (GO:0051276),Cellular Component: Chromosome (GO:0005694),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=RecF/RecN/SMC (IPR003395),SMCs flexible hinge (IPR010935),Structural maintenance of Chromosomes protein (IPR024704);NIAS_FLcDNA=J033131G15;Oryzabase=13980;Expression=AK103514;TENOR=Os01t0904400-01;KEGG=Os01t0904400-01
Chr01	irgsp1_rep	five_prime_UTR	39374104	39374228	.	-	.	Parent=Os01t0904400-01
Chr01	irgsp1_rep	CDS	39373786	39374103	.	-	0	Parent=Os01t0904400-01
Chr01	irgsp1_rep	CDS	39372233	39372913	.	-	0	Parent=Os01t0904400-01
Chr01	irgsp1_rep	CDS	39372003	39372146	.	-	0	Parent=Os01t0904400-01
Chr01	irgsp1_rep	CDS	39371631	39371921	.	-	0	Parent=Os01t0904400-01
Chr01	irgsp1_rep	CDS	39371315	39371500	.	-	0	Parent=Os01t0904400-01
Chr01	irgsp1_rep	CDS	39371053	39371217	.	-	0	Parent=Os01t0904400-01
Chr01	irgsp1_rep	CDS	39370898	39370957	.	-	0	Parent=Os01t0904400-01
Chr01	irgsp1_rep	CDS	39370605	39370667	.	-	0	Parent=Os01t0904400-01
Chr01	irgsp1_rep	CDS	39370393	39370484	.	-	0	Parent=Os01t0904400-01
Chr01	irgsp1_rep	CDS	39369895	39369991	.	-	1	Parent=Os01t0904400-01
Chr01	irgsp1_rep	CDS	39369369	39369485	.	-	0	Parent=Os01t0904400-01
Chr01	irgsp1_rep	CDS	39369068	39369286	.	-	0	Parent=Os01t0904400-01
Chr01	irgsp1_rep	CDS	39368423	39368563	.	-	0	Parent=Os01t0904400-01
Chr01	irgsp1_rep	CDS	39368156	39368323	.	-	0	Parent=Os01t0904400-01
Chr01	irgsp1_rep	CDS	39367875	39368059	.	-	0	Parent=Os01t0904400-01
Chr01	irgsp1_rep	CDS	39367701	39367794	.	-	1	Parent=Os01t0904400-01
Chr01	irgsp1_rep	CDS	39367533	39367621	.	-	0	Parent=Os01t0904400-01
Chr01	irgsp1_rep	CDS	39367178	39367403	.	-	1	Parent=Os01t0904400-01
Chr01	irgsp1_rep	CDS	39366741	39366815	.	-	0	Parent=Os01t0904400-01
Chr01	irgsp1_rep	CDS	39366477	39366593	.	-	0	Parent=Os01t0904400-01
Chr01	irgsp1_rep	three_prime_UTR	39366449	39366476	.	-	.	Parent=Os01t0904400-01
Chr01	irgsp1_rep	three_prime_UTR	39365920	39366331	.	-	.	Parent=Os01t0904400-01
Chr01	irgsp1_rep	mRNA	39374936	39379545	.	-	.	ID=Os01t0904500-01;Name=Os01t0904500-01;Locus_id=Os01g0904500;Note=Conserved hypothetical protein.;Transcript_evidence=AK119437 (DDBJ%2C Best hit);ORF_evidence=XP_002458940.1 (RefSeq);NIAS_FLcDNA=001-133-B03;Expression=AK119437;TENOR=Os01t0904500-01;KEGG=Os01t0904500-01
Chr01	irgsp1_rep	five_prime_UTR	39379493	39379545	.	-	.	Parent=Os01t0904500-01
Chr01	irgsp1_rep	CDS	39379191	39379492	.	-	0	Parent=Os01t0904500-01
Chr01	irgsp1_rep	CDS	39378554	39378724	.	-	1	Parent=Os01t0904500-01
Chr01	irgsp1_rep	CDS	39377879	39378122	.	-	1	Parent=Os01t0904500-01
Chr01	irgsp1_rep	CDS	39377567	39377767	.	-	0	Parent=Os01t0904500-01
Chr01	irgsp1_rep	CDS	39376977	39377449	.	-	0	Parent=Os01t0904500-01
Chr01	irgsp1_rep	CDS	39376736	39376900	.	-	1	Parent=Os01t0904500-01
Chr01	irgsp1_rep	CDS	39376348	39376591	.	-	1	Parent=Os01t0904500-01
Chr01	irgsp1_rep	CDS	39375250	39375894	.	-	0	Parent=Os01t0904500-01
Chr01	irgsp1_rep	three_prime_UTR	39374936	39375249	.	-	.	Parent=Os01t0904500-01
Chr01	irgsp1_rep	mRNA	39387278	39391014	.	-	.	ID=Os01t0904700-01;Name=Os01t0904700-01;Locus_id=Os01g0904700;RAP-DB Gene Symbol Synonym(s)=RR26%2C OsRR26%2C Rrb6%2C Orr6%2C OsRR16%2C OsRRB6;RAP-DB Gene Name Synonym(s)=B-TYPE RESPONSE REGULATOR 6%2C B-TYPE response regulator 6%2C B-type RR 6;CGSNL Gene Symbol=RR26;CGSNL Gene Name=B-TYPE RESPONSE REGULATOR 6;Oryzabase Gene Symbol Synonym(s)=OsRR26%2C Rrb6%2C Orr6%2C OsRR16%2C OsRRB6;Oryzabase Gene Name Synonym(s)=B-TYPE response regulator 6%2C B-type RR 6;Note=B-type response regulator%2C Cytokinin signaling;Transcript_evidence=BR000255 (DDBJ);ORF_evidence=A1A6A7 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: two-component response regulator activity (GO:0000156),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT/Myb domain (IPR001005),Signal transduction response regulator%2C receiver domain (IPR001789),Myb DNA-binding domain%2C plants (IPR006447),Homeodomain-like (IPR009057),CheY-like superfamily (IPR011006),Response regulator%2C plant B-type (IPR017053),Myb domain%2C DNA-binding (IPR017930);Manual Curation=May 28%2C 2010;Literature_PMID=16919402,17293362;Oryzabase=8153;TENOR=Os01t0904700-01
Chr01	irgsp1_rep	CDS	39390909	39391014	.	-	0	Parent=Os01t0904700-01
Chr01	irgsp1_rep	CDS	39389840	39389992	.	-	2	Parent=Os01t0904700-01
Chr01	irgsp1_rep	CDS	39389346	39389732	.	-	2	Parent=Os01t0904700-01
Chr01	irgsp1_rep	CDS	39389169	39389245	.	-	2	Parent=Os01t0904700-01
Chr01	irgsp1_rep	CDS	39387480	39388505	.	-	0	Parent=Os01t0904700-01
Chr01	irgsp1_rep	three_prime_UTR	39387278	39387479	.	-	.	Parent=Os01t0904700-01
Chr01	irgsp1_rep	mRNA	39408313	39410217	.	+	.	ID=Os01t0905200-01;Name=Os01t0905200-01;Locus_id=Os01g0905200;CGSNL Gene Symbol=EXO70FX15;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX15;Oryzabase Gene Symbol Synonym(s)=OsEXO70FX15%2C OsExo70FX15%2C OrysaFX15_Exo70;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein FX15;Note=Exo70 exocyst complex subunit family protein.;Transcript_evidence=AK060538 (DDBJ%2C Best hit);ORF_evidence=Q5N6V2 (UniProt);GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exo70 exocyst complex subunit (IPR004140),Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=001-021-E02;Oryzabase=20357;Expression=AK060538;TENOR=Os01t0905200-01;KEGG=Os01t0905200-01
Chr01	irgsp1_rep	five_prime_UTR	39408313	39408348	.	+	.	Parent=Os01t0905200-01
Chr01	irgsp1_rep	CDS	39408349	39408938	.	+	0	Parent=Os01t0905200-01
Chr01	irgsp1_rep	CDS	39409046	39410129	.	+	1	Parent=Os01t0905200-01
Chr01	irgsp1_rep	three_prime_UTR	39410130	39410217	.	+	.	Parent=Os01t0905200-01
Chr01	irgsp1_rep	mRNA	39408314	39410361	.	+	.	ID=Os01t0905200-02;Name=Os01t0905200-02;Locus_id=Os01g0905200;CGSNL Gene Symbol=EXO70FX15;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX15;Oryzabase Gene Symbol Synonym(s)=OsEXO70FX15%2C OsExo70FX15%2C OrysaFX15_Exo70;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein FX15;Note=Similar to Leucine zipper protein-like.;Transcript_evidence=AK067779 (DDBJ%2C Best hit);ORF_evidence=Q5N6V2 (UniProt);GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exo70 exocyst complex subunit (IPR004140),Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=J013117J21;Oryzabase=20357;Expression=AK067779;TENOR=Os01t0905200-02;KEGG=Os01t0905200-02
Chr01	irgsp1_rep	five_prime_UTR	39408314	39409148	.	+	.	Parent=Os01t0905200-02
Chr01	irgsp1_rep	CDS	39409149	39410129	.	+	0	Parent=Os01t0905200-02
Chr01	irgsp1_rep	three_prime_UTR	39410130	39410361	.	+	.	Parent=Os01t0905200-02
Chr01	irgsp1_rep	mRNA	39411052	39413189	.	+	.	ID=Os01t0905300-01;Name=Os01t0905300-01;Locus_id=Os01g0905300;CGSNL Gene Symbol=EXO70FX14;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX14;Oryzabase Gene Symbol Synonym(s)=OsEXO70FX14%2C OsExo70FX14%2C OrysaFX14_Exo70;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein FX14;Note=Similar to Leucine zipper protein-like.;Transcript_evidence=AK070609 (DDBJ%2C Best hit);ORF_evidence=Q5N6V3 (UniProt);NIAS_FLcDNA=J023063C17;Oryzabase=20356;TENOR=Os01t0905300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	39411052	39411138	.	+	.	Parent=Os01t0905300-01
Chr01	irgsp1_rep	CDS	39411139	39411861	.	+	0	Parent=Os01t0905300-01
Chr01	irgsp1_rep	three_prime_UTR	39411862	39413189	.	+	.	Parent=Os01t0905300-01
Chr01	irgsp1_rep	mRNA	39414803	39418617	.	-	.	ID=Os01t0905400-01;Name=Os01t0905400-01;Locus_id=Os01g0905400;CGSNL Gene Symbol=DLN34;CGSNL Gene Name=DLN REPRESSOR 34;Oryzabase Gene Symbol Synonym(s)=OsDLN34;Oryzabase Gene Name Synonym(s)=DLN repressor 34%2C DLN motif protein 34;Note=Transcriptional factor B3 family protein.;Transcript_evidence=AK063530 (DDBJ%2C Best hit);ORF_evidence=Q5N6V0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=001-117-B02;Oryzabase=23161;Expression=AK063530;TENOR=Os01t0905400-01;KEGG=Os01t0905400-01
Chr01	irgsp1_rep	five_prime_UTR	39418236	39418617	.	-	.	Parent=Os01t0905400-01
Chr01	irgsp1_rep	CDS	39417954	39418235	.	-	0	Parent=Os01t0905400-01
Chr01	irgsp1_rep	CDS	39416441	39417671	.	-	0	Parent=Os01t0905400-01
Chr01	irgsp1_rep	CDS	39416201	39416344	.	-	2	Parent=Os01t0905400-01
Chr01	irgsp1_rep	CDS	39415843	39415958	.	-	2	Parent=Os01t0905400-01
Chr01	irgsp1_rep	CDS	39414920	39415168	.	-	0	Parent=Os01t0905400-01
Chr01	irgsp1_rep	three_prime_UTR	39414803	39414919	.	-	.	Parent=Os01t0905400-01
Chr01	irgsp1_rep	mRNA	39421336	39422280	.	+	.	ID=Os01t0905500-01;Name=Os01t0905500-01;Locus_id=Os01g0905500;Note=Conserved hypothetical protein.;Transcript_evidence=AK243258 (DDBJ%2C Best hit);ORF_evidence=NP_001172698.1 (RefSeq);NIAS_FLcDNA=J100048O03;TENOR=Os01t0905500-01;KEGG=Os01t0905500-01
Chr01	irgsp1_rep	five_prime_UTR	39421336	39421382	.	+	.	Parent=Os01t0905500-01
Chr01	irgsp1_rep	CDS	39421383	39421844	.	+	0	Parent=Os01t0905500-01
Chr01	irgsp1_rep	three_prime_UTR	39421845	39422280	.	+	.	Parent=Os01t0905500-01
Chr01	irgsp1_rep	mRNA	39429069	39432424	.	+	.	ID=Os01t0905700-01;Name=Os01t0905700-01;Locus_id=Os01g0905700;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK060020 (DDBJ%2C Best hit),AK099185 (DDBJ%2C Best hit),AK104453 (DDBJ%2C Best hit),AK106188 (DDBJ%2C Best hit);ORF_evidence=Q5K4G3 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=006-302-G11,J023105K15,006-212-H10,001-208-D10;TENOR=Os01t0905700-01
Chr01	irgsp1_rep	five_prime_UTR	39429069	39429262	.	+	.	Parent=Os01t0905700-01
Chr01	irgsp1_rep	CDS	39429263	39429342	.	+	0	Parent=Os01t0905700-01
Chr01	irgsp1_rep	CDS	39429553	39429721	.	+	1	Parent=Os01t0905700-01
Chr01	irgsp1_rep	CDS	39429842	39429911	.	+	0	Parent=Os01t0905700-01
Chr01	irgsp1_rep	CDS	39430000	39430228	.	+	2	Parent=Os01t0905700-01
Chr01	irgsp1_rep	CDS	39431871	39432081	.	+	1	Parent=Os01t0905700-01
Chr01	irgsp1_rep	three_prime_UTR	39432082	39432424	.	+	.	Parent=Os01t0905700-01
Chr01	irgsp1_rep	mRNA	39433408	39435696	.	-	.	ID=Os01t0905800-01;Name=Os01t0905800-01;Locus_id=Os01g0905800;CGSNL Gene Symbol=ALDC1;CGSNL Gene Name=CYTOPLAST ALDOLASE 1;Oryzabase Gene Symbol Synonym(s)=AldC-1;Oryzabase Gene Name Synonym(s)=cytoplast aldolase-1%2C aldolase isozyme C-1%2C aldolase C-1%2C cytoplasmic aldolase C-1;Note=Aldolase C-1.;Transcript_evidence=AK073770 (DDBJ%2C Best hit);ORF_evidence=Q42476 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: fructose-bisphosphate aldolase activity (GO:0004332);InterPro=Fructose-bisphosphate aldolase%2C class-I (IPR000741),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J033068A16;Oryzabase=2217;Expression=AK073770;TENOR=Os01t0905800-01;KEGG=Os01t0905800-01 (EC:4.1.2.13)
Chr01	irgsp1_rep	five_prime_UTR	39435581	39435696	.	-	.	Parent=Os01t0905800-01
Chr01	irgsp1_rep	CDS	39435553	39435580	.	-	0	Parent=Os01t0905800-01
Chr01	irgsp1_rep	CDS	39433698	39434746	.	-	2	Parent=Os01t0905800-01
Chr01	irgsp1_rep	three_prime_UTR	39433408	39433697	.	-	.	Parent=Os01t0905800-01
Chr01	irgsp1_rep	mRNA	39433462	39435652	.	-	.	ID=Os01t0905800-02;Name=Os01t0905800-02;Locus_id=Os01g0905800;CGSNL Gene Symbol=ALDC1;CGSNL Gene Name=CYTOPLAST ALDOLASE 1;Oryzabase Gene Symbol Synonym(s)=AldC-1;Oryzabase Gene Name Synonym(s)=cytoplast aldolase-1%2C aldolase isozyme C-1%2C aldolase C-1%2C cytoplasmic aldolase C-1;Note=Aldolase C-1.;Transcript_evidence=AK062270 (DDBJ%2C Best hit);ORF_evidence=Q42476 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: fructose-bisphosphate aldolase activity (GO:0004332);InterPro=Fructose-bisphosphate aldolase%2C class-I (IPR000741),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=001-100-A06;Oryzabase=2217;Expression=AK062270;TENOR=Os01t0905800-02;KEGG=Os01t0905800-02 (EC:4.1.2.13)
Chr01	irgsp1_rep	five_prime_UTR	39435581	39435652	.	-	.	Parent=Os01t0905800-02
Chr01	irgsp1_rep	CDS	39435553	39435580	.	-	0	Parent=Os01t0905800-02
Chr01	irgsp1_rep	CDS	39434201	39434746	.	-	2	Parent=Os01t0905800-02
Chr01	irgsp1_rep	CDS	39433510	39433547	.	-	2	Parent=Os01t0905800-02
Chr01	irgsp1_rep	three_prime_UTR	39433462	39433509	.	-	.	Parent=Os01t0905800-02
Chr01	irgsp1_rep	mRNA	39433448	39435652	.	-	.	ID=Os01t0905800-03;Name=Os01t0905800-03;Locus_id=Os01g0905800;CGSNL Gene Symbol=ALDC1;CGSNL Gene Name=CYTOPLAST ALDOLASE 1;Oryzabase Gene Symbol Synonym(s)=AldC-1;Oryzabase Gene Name Synonym(s)=cytoplast aldolase-1%2C aldolase isozyme C-1%2C aldolase C-1%2C cytoplasmic aldolase C-1;Note=Aldolase C-1.;Transcript_evidence=AK104719 (DDBJ%2C Best hit);ORF_evidence=Q42476 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: fructose-bisphosphate aldolase activity (GO:0004332);InterPro=Fructose-bisphosphate aldolase%2C class-I (IPR000741),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=001-038-A10;Oryzabase=2217;Expression=AK104719;TENOR=Os01t0905800-03;KEGG=Os01t0905800-03 (EC:4.1.2.13)
Chr01	irgsp1_rep	five_prime_UTR	39435581	39435652	.	-	.	Parent=Os01t0905800-03
Chr01	irgsp1_rep	CDS	39435553	39435580	.	-	0	Parent=Os01t0905800-03
Chr01	irgsp1_rep	CDS	39433698	39434746	.	-	2	Parent=Os01t0905800-03
Chr01	irgsp1_rep	three_prime_UTR	39433448	39433697	.	-	.	Parent=Os01t0905800-03
Chr01	irgsp1_rep	mRNA	39437968	39438606	.	-	.	ID=Os01t0906000-01;Name=Os01t0906000-01;Locus_id=Os01g0906000;Note=Similar to Ceramide glucosyltransferase.;Transcript_evidence=AK059590 (DDBJ%2C Best hit);ORF_evidence=Q946Y1 (UniProt);NIAS_FLcDNA=001-030-D01;Expression=AK059590;TENOR=Os01t0906000-01;KEGG=Os01t0906000-01
Chr01	irgsp1_rep	five_prime_UTR	39438606	39438606	.	-	.	Parent=Os01t0906000-01
Chr01	irgsp1_rep	CDS	39438501	39438605	.	-	0	Parent=Os01t0906000-01
Chr01	irgsp1_rep	CDS	39438221	39438367	.	-	0	Parent=Os01t0906000-01
Chr01	irgsp1_rep	three_prime_UTR	39437968	39438220	.	-	.	Parent=Os01t0906000-01
Chr01	irgsp1_rep	mRNA	39449696	39454725	.	-	.	ID=Os01t0906200-01;Name=Os01t0906200-01;Locus_id=Os01g0906200;Note=Similar to heat-intolerant 1.;Transcript_evidence=AK106369 (DDBJ%2C Best hit);ORF_evidence=XP_002894257.1 (RefSeq);NIAS_FLcDNA=002-102-C05;TENOR=Os01t0906200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	39454725	39454725	.	-	.	Parent=Os01t0906200-01
Chr01	irgsp1_rep	CDS	39454692	39454724	.	-	0	Parent=Os01t0906200-01
Chr01	irgsp1_rep	CDS	39454096	39454173	.	-	0	Parent=Os01t0906200-01
Chr01	irgsp1_rep	CDS	39453637	39453744	.	-	0	Parent=Os01t0906200-01
Chr01	irgsp1_rep	CDS	39453480	39453545	.	-	0	Parent=Os01t0906200-01
Chr01	irgsp1_rep	CDS	39452468	39452545	.	-	0	Parent=Os01t0906200-01
Chr01	irgsp1_rep	CDS	39452183	39452316	.	-	0	Parent=Os01t0906200-01
Chr01	irgsp1_rep	CDS	39451466	39451559	.	-	1	Parent=Os01t0906200-01
Chr01	irgsp1_rep	CDS	39451262	39451339	.	-	0	Parent=Os01t0906200-01
Chr01	irgsp1_rep	CDS	39451122	39451184	.	-	0	Parent=Os01t0906200-01
Chr01	irgsp1_rep	CDS	39450575	39450643	.	-	0	Parent=Os01t0906200-01
Chr01	irgsp1_rep	CDS	39450356	39450451	.	-	0	Parent=Os01t0906200-01
Chr01	irgsp1_rep	CDS	39449917	39450246	.	-	0	Parent=Os01t0906200-01
Chr01	irgsp1_rep	three_prime_UTR	39449696	39449916	.	-	.	Parent=Os01t0906200-01
Chr01	irgsp1_rep	mRNA	39465264	39465617	.	-	.	ID=Os01t0906425-00;Name=Os01t0906425-00;Locus_id=Os01g0906425;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9EVG5 (UniProt);TENOR=Os01t0906425-00;KEGG=Os01t0906425-00
Chr01	irgsp1_rep	CDS	39465264	39465617	.	-	0	Parent=Os01t0906425-00
Chr01	irgsp1_rep	mRNA	39465654	39466676	.	-	.	ID=Os01t0906450-01;Name=Os01t0906450-01;Locus_id=Os01g0906450;Note=Similar to OSIGBa0145C12.3 protein.;Transcript_evidence=AK242417 (DDBJ%2C Best hit);ORF_evidence=Q01J09 (UniProt);NIAS_FLcDNA=J080080G14;Oryzabase=23288;TENOR=Os01t0906450-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	39466350	39466676	.	-	0	Parent=Os01t0906450-01
Chr01	irgsp1_rep	three_prime_UTR	39465654	39466349	.	-	.	Parent=Os01t0906450-01
Chr01	irgsp1_rep	mRNA	39467660	39473818	.	-	.	ID=Os01t0906600-01;Name=Os01t0906600-01;Locus_id=Os01g0906600;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK100885 (DDBJ%2C Best hit);ORF_evidence=NP_201125.2 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide TPR2 (IPR013105),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J023128D23;Expression=AK100885;TENOR=Os01t0906600-01;KEGG=Os01t0906600-01
Chr01	irgsp1_rep	five_prime_UTR	39473674	39473818	.	-	.	Parent=Os01t0906600-01
Chr01	irgsp1_rep	CDS	39473540	39473673	.	-	0	Parent=Os01t0906600-01
Chr01	irgsp1_rep	CDS	39473001	39473074	.	-	1	Parent=Os01t0906600-01
Chr01	irgsp1_rep	CDS	39472867	39472931	.	-	2	Parent=Os01t0906600-01
Chr01	irgsp1_rep	CDS	39472543	39472635	.	-	0	Parent=Os01t0906600-01
Chr01	irgsp1_rep	CDS	39472363	39472464	.	-	0	Parent=Os01t0906600-01
Chr01	irgsp1_rep	CDS	39472063	39472227	.	-	0	Parent=Os01t0906600-01
Chr01	irgsp1_rep	CDS	39471870	39471958	.	-	0	Parent=Os01t0906600-01
Chr01	irgsp1_rep	CDS	39471678	39471799	.	-	1	Parent=Os01t0906600-01
Chr01	irgsp1_rep	CDS	39471111	39471292	.	-	2	Parent=Os01t0906600-01
Chr01	irgsp1_rep	CDS	39469516	39469800	.	-	0	Parent=Os01t0906600-01
Chr01	irgsp1_rep	CDS	39469268	39469415	.	-	0	Parent=Os01t0906600-01
Chr01	irgsp1_rep	CDS	39468192	39468532	.	-	2	Parent=Os01t0906600-01
Chr01	irgsp1_rep	three_prime_UTR	39467660	39468191	.	-	.	Parent=Os01t0906600-01
Chr01	irgsp1_rep	mRNA	39483848	39484629	.	+	.	ID=Os01t0907200-00;Name=Os01t0907200-00;Locus_id=Os01g0907200;Note=Similar to BCL-2 binding anthanogene-1.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001152929.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin (IPR000626),Ubiquitin supergroup (IPR019955);TENOR=Os01t0907200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	39483848	39484136	.	+	0	Parent=Os01t0907200-00
Chr01	irgsp1_rep	CDS	39484234	39484457	.	+	2	Parent=Os01t0907200-00
Chr01	irgsp1_rep	CDS	39484552	39484629	.	+	0	Parent=Os01t0907200-00
Chr01	irgsp1_rep	mRNA	39486898	39488866	.	+	.	ID=Os01t0907300-01;Name=Os01t0907300-01;Locus_id=Os01g0907300;Oryzabase Gene Name Synonym(s)=S subunit of the transamidase complex;Note=Hypothetical conserved gene.;Transcript_evidence=AK108617 (DDBJ%2C Best hit);ORF_evidence=Q8LIW5 (UniProt);InterPro=Phosphatidylinositol-glycan biosynthesis class S protein (IPR019540);NIAS_FLcDNA=002-147-C03;Oryzabase=23089;Expression=AK108617;TENOR=Os01t0907300-01;KEGG=Os01t0907300-01
Chr01	irgsp1_rep	five_prime_UTR	39486898	39486992	.	+	.	Parent=Os01t0907300-01
Chr01	irgsp1_rep	CDS	39486993	39487191	.	+	0	Parent=Os01t0907300-01
Chr01	irgsp1_rep	CDS	39487293	39487965	.	+	2	Parent=Os01t0907300-01
Chr01	irgsp1_rep	CDS	39488295	39488379	.	+	1	Parent=Os01t0907300-01
Chr01	irgsp1_rep	CDS	39488472	39488573	.	+	0	Parent=Os01t0907300-01
Chr01	irgsp1_rep	three_prime_UTR	39488574	39488866	.	+	.	Parent=Os01t0907300-01
Chr01	irgsp1_rep	mRNA	39486936	39492098	.	+	.	ID=Os01t0907300-02;Name=Os01t0907300-02;Locus_id=Os01g0907300;Oryzabase Gene Name Synonym(s)=S subunit of the transamidase complex;Note=Similar to GPI transamidase component PIG-S-related.;Transcript_evidence=AK103626 (DDBJ%2C Best hit);ORF_evidence=NP_187374.2 (RefSeq);InterPro=Phosphatidylinositol-glycan biosynthesis class S protein (IPR019540);NIAS_FLcDNA=J033133N22;Oryzabase=23089;Expression=AK103626;TENOR=Os01t0907300-02;KEGG=Os01t0907300-02
Chr01	irgsp1_rep	five_prime_UTR	39486936	39486992	.	+	.	Parent=Os01t0907300-02
Chr01	irgsp1_rep	CDS	39486993	39487191	.	+	0	Parent=Os01t0907300-02
Chr01	irgsp1_rep	CDS	39487293	39487965	.	+	2	Parent=Os01t0907300-02
Chr01	irgsp1_rep	CDS	39488295	39488379	.	+	1	Parent=Os01t0907300-02
Chr01	irgsp1_rep	CDS	39488472	39488561	.	+	0	Parent=Os01t0907300-02
Chr01	irgsp1_rep	CDS	39488694	39488767	.	+	0	Parent=Os01t0907300-02
Chr01	irgsp1_rep	CDS	39489162	39489246	.	+	1	Parent=Os01t0907300-02
Chr01	irgsp1_rep	CDS	39489323	39489409	.	+	0	Parent=Os01t0907300-02
Chr01	irgsp1_rep	CDS	39489538	39489668	.	+	0	Parent=Os01t0907300-02
Chr01	irgsp1_rep	CDS	39490383	39490464	.	+	1	Parent=Os01t0907300-02
Chr01	irgsp1_rep	CDS	39490551	39490598	.	+	0	Parent=Os01t0907300-02
Chr01	irgsp1_rep	CDS	39490910	39490978	.	+	0	Parent=Os01t0907300-02
Chr01	irgsp1_rep	CDS	39491079	39491186	.	+	0	Parent=Os01t0907300-02
Chr01	irgsp1_rep	CDS	39491534	39491653	.	+	0	Parent=Os01t0907300-02
Chr01	irgsp1_rep	three_prime_UTR	39491654	39492098	.	+	.	Parent=Os01t0907300-02
Chr01	irgsp1_rep	mRNA	39493173	39499938	.	+	.	ID=Os01t0907400-01;Name=Os01t0907400-01;Locus_id=Os01g0907400;RAP-DB Gene Symbol Synonym(s)=JMJ705;RAP-DB Gene Name Synonym(s)=Jumonji 705%2C Jumonji C Domain Protein JMJ705;Oryzabase Gene Symbol Synonym(s)=JMJ705;Oryzabase Gene Name Synonym(s)=Jumonji 705%2C Jumonji C Domain Protein JMJ705;Note=Histone lysine demethylase%2C Stress-responsive H3K27me3(histon H3 lysine 27 trimethylation) demethylation;Transcript_evidence=AK068952;ORF_evidence=Q5N712;GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: metal ion binding (GO:0046872);InterPro=Transcription factor jumonji%2C JmjN (IPR003349),JmjC domain (IPR003347),Zinc finger%2C C2H2-like (IPR015880),Zinc finger%2C C2H2 (IPR007087),Zinc finger C2H2-type/integrase DNA-binding domain (IPR013087);NIAS_FLcDNA=J023001N18;Manual Curation=January 30%2C 2014;Literature_PMID=24280387;Oryzabase=15200;TENOR=Os01t0907400-01;KEGG=Os01t0907400-01
Chr01	irgsp1_rep	five_prime_UTR	39493173	39493293	.	+	.	Parent=Os01t0907400-01
Chr01	irgsp1_rep	CDS	39493294	39494167	.	+	0	Parent=Os01t0907400-01
Chr01	irgsp1_rep	CDS	39494265	39494343	.	+	2	Parent=Os01t0907400-01
Chr01	irgsp1_rep	CDS	39494694	39494761	.	+	1	Parent=Os01t0907400-01
Chr01	irgsp1_rep	CDS	39495351	39495501	.	+	2	Parent=Os01t0907400-01
Chr01	irgsp1_rep	CDS	39496315	39496895	.	+	1	Parent=Os01t0907400-01
Chr01	irgsp1_rep	CDS	39497364	39498173	.	+	2	Parent=Os01t0907400-01
Chr01	irgsp1_rep	CDS	39498479	39499776	.	+	2	Parent=Os01t0907400-01
Chr01	irgsp1_rep	three_prime_UTR	39499777	39499938	.	+	.	Parent=Os01t0907400-01
Chr01	irgsp1_rep	mRNA	39501378	39502910	.	+	.	ID=Os01t0907600-01;Name=Os01t0907600-01;Locus_id=Os01g0907600;RAP-DB Gene Symbol Synonym(s)=OsSAG12-1;RAP-DB Gene Name Synonym(s)=senescence associated gene 12-1;Oryzabase Gene Symbol Synonym(s)=REP-1%2C OsSAG12-1%2C SAG12-1%2C OsEnS-21;Oryzabase Gene Name Synonym(s)=cysteine endopeptidase REP-1%2C senescence associated gene 12-1%2C endosperm-specific gene 21;Note=Cysteine protease%2C Negative regulator of cell death;Transcript_evidence=EF122495 (Ilpumbyeo);ORF_evidence=Q7F3A8;GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase C1A (IPR013128),Cathepsin propeptide inhibitor domain (I29) (IPR013201),Peptidase C1A%2C papain C-terminal (IPR000668),Cysteine peptidase%2C cysteine active site (IPR000169),Cysteine peptidase%2C histidine active site (IPR025660),Cysteine peptidase%2C asparagine active site (IPR025661);Manual Curation=April 24%2C 2017;Literature_PMID=23938390;Oryzabase=11862;TENOR=Os01t0907600-00;KEGG=Os01t0907600-00;Subcellular location=vacuole (GO:0005773)
Chr01	irgsp1_rep	five_prime_UTR	39501378	39501478	.	+	.	Parent=Os01t0907600-01
Chr01	irgsp1_rep	CDS	39501479	39502594	.	+	0	Parent=Os01t0907600-01
Chr01	irgsp1_rep	three_prime_UTR	39502595	39502910	.	+	.	Parent=Os01t0907600-01
Chr01	irgsp1_rep	mRNA	39523638	39527194	.	+	.	ID=Os01t0907900-01;Name=Os01t0907900-01;Locus_id=Os01g0907900;RAP-DB Gene Symbol Synonym(s)=PLA2%2C pla2%2C pla2(pla2-1%2C pla2-2)%2C plt2%2C LHD2;RAP-DB Gene Name Synonym(s)=PLASTOCHRON 2%2C plastoChron2%2C PLASTOCHRON2%2C LEAFY HEAD2%2C Protein terminal ear1 homolog%2C Protein PLASTOCHRON2%2C Protein LEAFY HEAD2;CGSNL Gene Symbol=PLA2;CGSNL Gene Name=PLASTOCHRON 2;Oryzabase Gene Symbol Synonym(s)=pla2%2C pla2(pla2-1%2C pla2-2)%2C plt2%2C LHD2;Oryzabase Gene Name Synonym(s)=plastoChron2%2C PLASTOCHRON2%2C LEAFY HEAD2%2C Protein terminal ear1 homolog%2C Protein PLASTOCHRON2%2C Protein LEAFY HEAD2;Note=MEI2-like RNA binding protein%2C Regulation of leaf initiation and maturation;Transcript_evidence=AB244276;ORF_evidence=Q0JGS5;GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=Nucleotide-binding alpha-beta plait domain (IPR012677),RNA recognition motif domain (IPR000504),RNA recognition motif 2 (IPR007201);Manual Curation=December 9%2C 2015;Literature_PMID=16461585;Oryzabase=2133;TENOR=Os01t0907900-00
Chr01	irgsp1_rep	CDS	39523638	39524373	.	+	0	Parent=Os01t0907900-01
Chr01	irgsp1_rep	CDS	39524485	39524653	.	+	2	Parent=Os01t0907900-01
Chr01	irgsp1_rep	CDS	39524726	39525229	.	+	1	Parent=Os01t0907900-01
Chr01	irgsp1_rep	CDS	39525360	39525488	.	+	1	Parent=Os01t0907900-01
Chr01	irgsp1_rep	CDS	39526590	39526731	.	+	1	Parent=Os01t0907900-01
Chr01	irgsp1_rep	CDS	39526823	39527194	.	+	0	Parent=Os01t0907900-01
Chr01	irgsp1_rep	mRNA	39534694	39538174	.	+	.	ID=Os01t0908001-01;Name=Os01t0908001-01;Locus_id=Os01g0908001;Note=Hypothetical gene.;Transcript_evidence=AK288846 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090075E22;TENOR=Os01t0908001-01;KEGG=Os01t0908001-01
Chr01	irgsp1_rep	five_prime_UTR	39534694	39535086	.	+	.	Parent=Os01t0908001-01
Chr01	irgsp1_rep	CDS	39535087	39535413	.	+	0	Parent=Os01t0908001-01
Chr01	irgsp1_rep	three_prime_UTR	39535414	39538174	.	+	.	Parent=Os01t0908001-01
Chr01	irgsp1_rep	mRNA	39538151	39541096	.	-	.	ID=Os01t0908100-01;Name=Os01t0908100-01;Locus_id=Os01g0908100;Note=RabGAP/TBC domain containing protein.;Transcript_evidence=AK072293 (DDBJ%2C Best hit);ORF_evidence=XP_002870356.1 (RefSeq);GO=Biological Process: regulation of Rab GTPase activity (GO:0032313),Cellular Component: intracellular (GO:0005622),Molecular Function: Rab GTPase activator activity (GO:0005097);InterPro=Rab-GAP/TBC domain (IPR000195);NIAS_FLcDNA=J023017P18;Expression=AK072293;TENOR=Os01t0908100-01;KEGG=Os01t0908100-01
Chr01	irgsp1_rep	five_prime_UTR	39541068	39541096	.	-	.	Parent=Os01t0908100-01
Chr01	irgsp1_rep	CDS	39540984	39541067	.	-	0	Parent=Os01t0908100-01
Chr01	irgsp1_rep	CDS	39540787	39540879	.	-	0	Parent=Os01t0908100-01
Chr01	irgsp1_rep	CDS	39540312	39540416	.	-	0	Parent=Os01t0908100-01
Chr01	irgsp1_rep	CDS	39540011	39540160	.	-	0	Parent=Os01t0908100-01
Chr01	irgsp1_rep	CDS	39539445	39539543	.	-	0	Parent=Os01t0908100-01
Chr01	irgsp1_rep	CDS	39539244	39539372	.	-	0	Parent=Os01t0908100-01
Chr01	irgsp1_rep	CDS	39538916	39539095	.	-	0	Parent=Os01t0908100-01
Chr01	irgsp1_rep	CDS	39538550	39538666	.	-	0	Parent=Os01t0908100-01
Chr01	irgsp1_rep	CDS	39538318	39538467	.	-	0	Parent=Os01t0908100-01
Chr01	irgsp1_rep	three_prime_UTR	39538151	39538317	.	-	.	Parent=Os01t0908100-01
Chr01	irgsp1_rep	mRNA	39538151	39539545	.	-	.	ID=Os01t0908100-02;Name=Os01t0908100-02;Locus_id=Os01g0908100;Note=Similar to predicted protein.;Transcript_evidence=AK105143 (DDBJ%2C Best hit);ORF_evidence=NP_193109.1 (RefSeq);GO=Biological Process: regulation of Rab GTPase activity (GO:0032313),Cellular Component: intracellular (GO:0005622),Molecular Function: Rab GTPase activator activity (GO:0005097);InterPro=Rab-GAP/TBC domain (IPR000195);NIAS_FLcDNA=001-103-B07;Expression=AK105143;TENOR=Os01t0908100-02;KEGG=Os01t0908100-02
Chr01	irgsp1_rep	five_prime_UTR	39539544	39539545	.	-	.	Parent=Os01t0908100-02
Chr01	irgsp1_rep	CDS	39539445	39539543	.	-	0	Parent=Os01t0908100-02
Chr01	irgsp1_rep	CDS	39539244	39539372	.	-	0	Parent=Os01t0908100-02
Chr01	irgsp1_rep	CDS	39538916	39539095	.	-	0	Parent=Os01t0908100-02
Chr01	irgsp1_rep	CDS	39538550	39538666	.	-	0	Parent=Os01t0908100-02
Chr01	irgsp1_rep	CDS	39538318	39538467	.	-	0	Parent=Os01t0908100-02
Chr01	irgsp1_rep	three_prime_UTR	39538151	39538317	.	-	.	Parent=Os01t0908100-02
Chr01	irgsp1_rep	mRNA	39544235	39548599	.	+	.	ID=Os01t0908200-01;Name=Os01t0908200-01;Locus_id=Os01g0908200;RAP-DB Gene Symbol Synonym(s)=OsBT;Oryzabase Gene Symbol Synonym(s)=OsBT%2C BT;Oryzabase Gene Name Synonym(s)=BT1/BT2 ortholog;Note=Member of the Bric-a-Brac/Tramtrack/Broad (BTB) family%2C BT1/BT2 ortholog%2C Negative regulation of nitrate uptake and nitrogen use efficiency;Transcript_evidence=AK067269;ORF_evidence=Q8L3R7;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: transcription cofactor activity (GO:0003712),Molecular Function: histone acetyltransferase activity (GO:0004402),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Cellular Component: nucleus (GO:0005634);InterPro=SKP1/BTB/POZ domain (IPR011333),BTB/POZ domain (IPR000210),Zinc finger%2C TAZ-type (IPR000197);NIAS_FLcDNA=J013099J01;Manual Curation=June 16%2C 2016;Literature_PMID=27208309;Oryzabase=21098;Expression=AK067269;TENOR=Os01t0908200-01;KEGG=Os01t0908200-01
Chr01	irgsp1_rep	five_prime_UTR	39544235	39544358	.	+	.	Parent=Os01t0908200-01
Chr01	irgsp1_rep	CDS	39544359	39544463	.	+	0	Parent=Os01t0908200-01
Chr01	irgsp1_rep	CDS	39544606	39544769	.	+	0	Parent=Os01t0908200-01
Chr01	irgsp1_rep	CDS	39546537	39546843	.	+	1	Parent=Os01t0908200-01
Chr01	irgsp1_rep	CDS	39547655	39547962	.	+	0	Parent=Os01t0908200-01
Chr01	irgsp1_rep	CDS	39548162	39548321	.	+	1	Parent=Os01t0908200-01
Chr01	irgsp1_rep	three_prime_UTR	39548322	39548599	.	+	.	Parent=Os01t0908200-01
Chr01	irgsp1_rep	mRNA	39544770	39545927	.	+	.	ID=Os01t0908301-01;Name=Os01t0908301-01;Locus_id=Os01g0908301;Note=Non-protein coding transcript.;Transcript_evidence=AK111667 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013155L06;TENOR=Os01t0908301-01
Chr01	irgsp1_rep	exon	39544770	39545927	.	+	.	Parent=Os01t0908301-01
Chr01	irgsp1_rep	mRNA	39549164	39550832	.	-	.	ID=Os01t0908400-01;Name=Os01t0908400-01;Locus_id=Os01g0908400;Note=Conserved hypothetical protein.;Transcript_evidence=AK062957 (DDBJ%2C Best hit);ORF_evidence=A2WY49 (UniProt);NIAS_FLcDNA=001-109-D02;Expression=AK062957;TENOR=Os01t0908400-01;KEGG=Os01t0908400-01
Chr01	irgsp1_rep	five_prime_UTR	39550727	39550832	.	-	.	Parent=Os01t0908400-01
Chr01	irgsp1_rep	CDS	39550622	39550726	.	-	0	Parent=Os01t0908400-01
Chr01	irgsp1_rep	CDS	39549343	39549423	.	-	0	Parent=Os01t0908400-01
Chr01	irgsp1_rep	three_prime_UTR	39549164	39549342	.	-	.	Parent=Os01t0908400-01
Chr01	irgsp1_rep	mRNA	39549212	39550788	.	-	.	ID=Os01t0908400-02;Name=Os01t0908400-02;Locus_id=Os01g0908400;Note=Conserved hypothetical protein.;Transcript_evidence=AK099301 (DDBJ%2C Best hit);ORF_evidence=A2WY49 (UniProt);NIAS_FLcDNA=J023136B12;Expression=AK099301;TENOR=Os01t0908400-02;KEGG=Os01t0908400-02
Chr01	irgsp1_rep	five_prime_UTR	39550727	39550788	.	-	.	Parent=Os01t0908400-02
Chr01	irgsp1_rep	CDS	39550622	39550726	.	-	0	Parent=Os01t0908400-02
Chr01	irgsp1_rep	CDS	39549343	39549423	.	-	0	Parent=Os01t0908400-02
Chr01	irgsp1_rep	three_prime_UTR	39549212	39549342	.	-	.	Parent=Os01t0908400-02
Chr01	irgsp1_rep	mRNA	39551526	39555254	.	-	.	ID=Os01t0908500-01;Name=Os01t0908500-01;Locus_id=Os01g0908500;Oryzabase Gene Symbol Synonym(s)=OsMRS2-3;Oryzabase Gene Name Synonym(s)=MRS2/MGT family member 3;Note=Mg2+ transporter protein%2C CorA-like domain containing protein.;Transcript_evidence=AK120875 (DDBJ%2C Best hit);ORF_evidence=Q8L4S2 (UniProt);NIAS_FLcDNA=J023027C03;Oryzabase=14375;Expression=AK120875;TENOR=Os01t0908500-01;KEGG=Os01t0908500-01
Chr01	irgsp1_rep	five_prime_UTR	39555145	39555254	.	-	.	Parent=Os01t0908500-01
Chr01	irgsp1_rep	CDS	39554773	39555144	.	-	0	Parent=Os01t0908500-01
Chr01	irgsp1_rep	CDS	39553939	39554187	.	-	0	Parent=Os01t0908500-01
Chr01	irgsp1_rep	CDS	39553441	39553569	.	-	0	Parent=Os01t0908500-01
Chr01	irgsp1_rep	CDS	39552813	39552955	.	-	0	Parent=Os01t0908500-01
Chr01	irgsp1_rep	CDS	39552551	39552686	.	-	1	Parent=Os01t0908500-01
Chr01	irgsp1_rep	CDS	39551887	39552192	.	-	0	Parent=Os01t0908500-01
Chr01	irgsp1_rep	three_prime_UTR	39551526	39551886	.	-	.	Parent=Os01t0908500-01
Chr01	irgsp1_rep	mRNA	39551438	39554860	.	-	.	ID=Os01t0908500-02;Name=Os01t0908500-02;Locus_id=Os01g0908500;Oryzabase Gene Symbol Synonym(s)=OsMRS2-3;Oryzabase Gene Name Synonym(s)=MRS2/MGT family member 3;Note=Similar to Magnesium transporter MRS2-F.;Transcript_evidence=AK072213 (DDBJ%2C Best hit);ORF_evidence=Q8L4S2 (UniProt);NIAS_FLcDNA=J013168A06;Oryzabase=14375;TENOR=Os01t0908500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	39554860	39554860	.	-	.	Parent=Os01t0908500-02
Chr01	irgsp1_rep	CDS	39554773	39554859	.	-	0	Parent=Os01t0908500-02
Chr01	irgsp1_rep	CDS	39553939	39554187	.	-	0	Parent=Os01t0908500-02
Chr01	irgsp1_rep	CDS	39553441	39553569	.	-	0	Parent=Os01t0908500-02
Chr01	irgsp1_rep	CDS	39552813	39552955	.	-	0	Parent=Os01t0908500-02
Chr01	irgsp1_rep	CDS	39552551	39552686	.	-	1	Parent=Os01t0908500-02
Chr01	irgsp1_rep	CDS	39551887	39552192	.	-	0	Parent=Os01t0908500-02
Chr01	irgsp1_rep	three_prime_UTR	39551438	39551886	.	-	.	Parent=Os01t0908500-02
Chr01	irgsp1_rep	mRNA	39562727	39565686	.	+	.	ID=Os01t0908600-01;Name=Os01t0908600-01;Locus_id=Os01g0908600;RAP-DB Gene Symbol Synonym(s)=OsProT1;RAP-DB Gene Name Synonym(s)=Proline transporter 1;Oryzabase Gene Symbol Synonym(s)=OsProT1;Oryzabase Gene Name Synonym(s)=proline transporter 1;Note=Proline (Pro) and &gamma%3B-aminobutyric acid (GABA) transporter%2C Stress tolerance%2C Cadmium stress tolerance;Transcript_evidence=AK241733;ORF_evidence=Q8L431;InterPro=Amino acid transporter%2C transmembrane domain (IPR013057);NIAS_FLcDNA=J065200A10;Manual Curation=November 12%2C 2019;Literature_PMID=31707526;Oryzabase=18513;TENOR=Os01t0908600-01;KEGG=Os01t0908600-01;Subcellular location=plasma membrane (GO:0005886)
Chr01	irgsp1_rep	five_prime_UTR	39562727	39562761	.	+	.	Parent=Os01t0908600-01
Chr01	irgsp1_rep	CDS	39562762	39562867	.	+	0	Parent=Os01t0908600-01
Chr01	irgsp1_rep	CDS	39563040	39563264	.	+	2	Parent=Os01t0908600-01
Chr01	irgsp1_rep	CDS	39563392	39563486	.	+	2	Parent=Os01t0908600-01
Chr01	irgsp1_rep	CDS	39563608	39563800	.	+	0	Parent=Os01t0908600-01
Chr01	irgsp1_rep	CDS	39564209	39564549	.	+	2	Parent=Os01t0908600-01
Chr01	irgsp1_rep	CDS	39564954	39565184	.	+	0	Parent=Os01t0908600-01
Chr01	irgsp1_rep	CDS	39565278	39565430	.	+	0	Parent=Os01t0908600-01
Chr01	irgsp1_rep	three_prime_UTR	39565431	39565686	.	+	.	Parent=Os01t0908600-01
Chr01	irgsp1_rep	mRNA	39565772	39569993	.	-	.	ID=Os01t0908700-01;Name=Os01t0908700-01;Locus_id=Os01g0908700;Oryzabase Gene Symbol Synonym(s)=OsRFP;Oryzabase Gene Name Synonym(s)=RING finger protein;Note=Similar to Hnrpa2b1-prov protein.;Transcript_evidence=AK120427 (DDBJ%2C Best hit);ORF_evidence=Q153E2 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),von Willebrand factor%2C type A (IPR002035),Copine (IPR010734),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J013095H17;Oryzabase=21161;Expression=AK120427;TENOR=Os01t0908700-01;KEGG=Os01t0908700-01
Chr01	irgsp1_rep	five_prime_UTR	39569841	39569993	.	-	.	Parent=Os01t0908700-01
Chr01	irgsp1_rep	CDS	39569668	39569840	.	-	0	Parent=Os01t0908700-01
Chr01	irgsp1_rep	CDS	39569502	39569580	.	-	1	Parent=Os01t0908700-01
Chr01	irgsp1_rep	CDS	39568542	39568626	.	-	0	Parent=Os01t0908700-01
Chr01	irgsp1_rep	CDS	39568308	39568448	.	-	2	Parent=Os01t0908700-01
Chr01	irgsp1_rep	CDS	39568109	39568222	.	-	2	Parent=Os01t0908700-01
Chr01	irgsp1_rep	CDS	39567930	39568027	.	-	2	Parent=Os01t0908700-01
Chr01	irgsp1_rep	CDS	39567462	39567541	.	-	0	Parent=Os01t0908700-01
Chr01	irgsp1_rep	CDS	39567184	39567289	.	-	1	Parent=Os01t0908700-01
Chr01	irgsp1_rep	CDS	39566958	39567085	.	-	0	Parent=Os01t0908700-01
Chr01	irgsp1_rep	CDS	39566660	39566858	.	-	1	Parent=Os01t0908700-01
Chr01	irgsp1_rep	CDS	39566502	39566558	.	-	0	Parent=Os01t0908700-01
Chr01	irgsp1_rep	CDS	39566293	39566373	.	-	0	Parent=Os01t0908700-01
Chr01	irgsp1_rep	three_prime_UTR	39565772	39566292	.	-	.	Parent=Os01t0908700-01
Chr01	irgsp1_rep	mRNA	39577048	39580184	.	+	.	ID=Os01t0908800-01;Name=Os01t0908800-01;Locus_id=Os01g0908800;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK065889 (DDBJ%2C Best hit);ORF_evidence=A2WY53 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J013044H07;Expression=AK065889;TENOR=Os01t0908800-01;KEGG=Os01t0908800-01
Chr01	irgsp1_rep	five_prime_UTR	39577048	39577151	.	+	.	Parent=Os01t0908800-01
Chr01	irgsp1_rep	CDS	39577152	39578672	.	+	0	Parent=Os01t0908800-01
Chr01	irgsp1_rep	three_prime_UTR	39578673	39578752	.	+	.	Parent=Os01t0908800-01
Chr01	irgsp1_rep	three_prime_UTR	39578879	39579556	.	+	.	Parent=Os01t0908800-01
Chr01	irgsp1_rep	three_prime_UTR	39579640	39580184	.	+	.	Parent=Os01t0908800-01
Chr01	irgsp1_rep	mRNA	39582355	39583929	.	-	.	ID=Os01t0909000-00;Name=Os01t0909000-00;Locus_id=Os01g0909000;Note=Hypothetical conserved gene.;Transcript_evidence=EU975217 (DDBJ);ORF_evidence=NP_001152383.1 (RefSeq);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);TENOR=Os01t0909000-00;KEGG=Os01t0909000-00
Chr01	irgsp1_rep	five_prime_UTR	39583723	39583929	.	-	.	Parent=Os01t0909000-00
Chr01	irgsp1_rep	CDS	39582355	39583722	.	-	0	Parent=Os01t0909000-00
Chr01	irgsp1_rep	mRNA	39588274	39591239	.	+	.	ID=Os01t0909100-01;Name=Os01t0909100-01;Locus_id=Os01g0909100;CGSNL Gene Symbol=HDT2;CGSNL Gene Name=HISTONE DEACETYLASE 2;Oryzabase Gene Symbol Synonym(s)=OsHDT2;Oryzabase Gene Name Synonym(s)=histone deacetylase OsHDT2;Note=Hypothetical conserved gene.;Transcript_evidence=AK241121 (DDBJ%2C Best hit);ORF_evidence=Q5N871 (UniProt);NIAS_FLcDNA=J065094J12;Oryzabase=9583;TENOR=Os01t0909100-01;KEGG=Os01t0909100-01
Chr01	irgsp1_rep	five_prime_UTR	39588274	39588309	.	+	.	Parent=Os01t0909100-01
Chr01	irgsp1_rep	CDS	39588310	39588421	.	+	0	Parent=Os01t0909100-01
Chr01	irgsp1_rep	CDS	39589368	39589438	.	+	2	Parent=Os01t0909100-01
Chr01	irgsp1_rep	CDS	39589520	39589725	.	+	0	Parent=Os01t0909100-01
Chr01	irgsp1_rep	CDS	39589813	39589835	.	+	1	Parent=Os01t0909100-01
Chr01	irgsp1_rep	CDS	39589927	39589983	.	+	2	Parent=Os01t0909100-01
Chr01	irgsp1_rep	CDS	39590154	39590341	.	+	2	Parent=Os01t0909100-01
Chr01	irgsp1_rep	CDS	39590488	39590565	.	+	0	Parent=Os01t0909100-01
Chr01	irgsp1_rep	three_prime_UTR	39590566	39590608	.	+	.	Parent=Os01t0909100-01
Chr01	irgsp1_rep	three_prime_UTR	39590707	39590917	.	+	.	Parent=Os01t0909100-01
Chr01	irgsp1_rep	three_prime_UTR	39591001	39591239	.	+	.	Parent=Os01t0909100-01
Chr01	irgsp1_rep	mRNA	39592613	39595176	.	-	.	ID=Os01t0909150-00;Name=Os01t0909150-00;Locus_id=Os01g0909150;Note=Conserved hypothetical protein.;Transcript_evidence=FP093360 (DDBJ);ORF_evidence=B8A862 (UniProt);TENOR=Os01t0909150-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	39595106	39595176	.	-	.	Parent=Os01t0909150-00
Chr01	irgsp1_rep	CDS	39595093	39595105	.	-	0	Parent=Os01t0909150-00
Chr01	irgsp1_rep	CDS	39594384	39594454	.	-	2	Parent=Os01t0909150-00
Chr01	irgsp1_rep	CDS	39593942	39594217	.	-	0	Parent=Os01t0909150-00
Chr01	irgsp1_rep	three_prime_UTR	39593906	39593941	.	-	.	Parent=Os01t0909150-00
Chr01	irgsp1_rep	three_prime_UTR	39593494	39593618	.	-	.	Parent=Os01t0909150-00
Chr01	irgsp1_rep	three_prime_UTR	39593199	39593294	.	-	.	Parent=Os01t0909150-00
Chr01	irgsp1_rep	three_prime_UTR	39593001	39593110	.	-	.	Parent=Os01t0909150-00
Chr01	irgsp1_rep	three_prime_UTR	39592830	39592934	.	-	.	Parent=Os01t0909150-00
Chr01	irgsp1_rep	three_prime_UTR	39592613	39592735	.	-	.	Parent=Os01t0909150-00
Chr01	irgsp1_rep	mRNA	39595682	39606227	.	-	.	ID=Os01t0909200-01;Name=Os01t0909200-01;Locus_id=Os01g0909200;RAP-DB Gene Symbol Synonym(s)=OsDCL3a;RAP-DB Gene Name Synonym(s)=Dicer-like 3a;CGSNL Gene Symbol=DCL3A;CGSNL Gene Name=DICER-LIKE 3A;Oryzabase Gene Symbol Synonym(s)=OsDCL3a;Oryzabase Gene Name Synonym(s)=Endoribonuclease Dicer homolog 3a%2C Dicer-like protein 3a;Note=Dicer-like 3 homolog%2C 24-nt siRNA processing%2C Control of agricultural trait;Transcript_evidence=AK120075;ORF_evidence=Q5N870;GO=Biological Process: RNA processing (GO:0006396),Molecular Function: DNA binding (GO:0003677),Molecular Function: ribonuclease III activity (GO:0004525),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: endoribonuclease activity%2C producing 5'-phosphomonoesters (GO:0016891);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),Dicer dimerisation domain superfamily (IPR038248),PAZ domain superfamily (IPR036085),Ribonuclease III%2C endonuclease domain superfamily (IPR036389),Helicase superfamily 1/2%2C ATP-binding domain (IPR014001),Helicase/UvrB%2C N-terminal (IPR006935),Helicase%2C C-terminal (IPR001650),Dicer dimerisation domain (IPR005034),PAZ domain (IPR003100),Ribonuclease III domain (IPR000999);NIAS_FLcDNA=J013008L07;Manual Curation=December 5%2C 2019;Literature_PMID=24554078,21973320;Oryzabase=8309;Expression=AK120075;TENOR=Os01t0909200-01;KEGG=Os01t0909200-01 (EC:3.1.26.-)
Chr01	irgsp1_rep	five_prime_UTR	39606082	39606227	.	-	.	Parent=Os01t0909200-01
Chr01	irgsp1_rep	five_prime_UTR	39605706	39605710	.	-	.	Parent=Os01t0909200-01
Chr01	irgsp1_rep	CDS	39605605	39605705	.	-	0	Parent=Os01t0909200-01
Chr01	irgsp1_rep	CDS	39605328	39605508	.	-	1	Parent=Os01t0909200-01
Chr01	irgsp1_rep	CDS	39605138	39605252	.	-	0	Parent=Os01t0909200-01
Chr01	irgsp1_rep	CDS	39604426	39604559	.	-	2	Parent=Os01t0909200-01
Chr01	irgsp1_rep	CDS	39604252	39604322	.	-	0	Parent=Os01t0909200-01
Chr01	irgsp1_rep	CDS	39603861	39603924	.	-	1	Parent=Os01t0909200-01
Chr01	irgsp1_rep	CDS	39603404	39603535	.	-	0	Parent=Os01t0909200-01
Chr01	irgsp1_rep	CDS	39603145	39603297	.	-	0	Parent=Os01t0909200-01
Chr01	irgsp1_rep	CDS	39602688	39602862	.	-	0	Parent=Os01t0909200-01
Chr01	irgsp1_rep	CDS	39602269	39602374	.	-	2	Parent=Os01t0909200-01
Chr01	irgsp1_rep	CDS	39601990	39602182	.	-	1	Parent=Os01t0909200-01
Chr01	irgsp1_rep	CDS	39601748	39601908	.	-	0	Parent=Os01t0909200-01
Chr01	irgsp1_rep	CDS	39601413	39601631	.	-	1	Parent=Os01t0909200-01
Chr01	irgsp1_rep	CDS	39601007	39601263	.	-	1	Parent=Os01t0909200-01
Chr01	irgsp1_rep	CDS	39599990	39600261	.	-	2	Parent=Os01t0909200-01
Chr01	irgsp1_rep	CDS	39599420	39599910	.	-	0	Parent=Os01t0909200-01
Chr01	irgsp1_rep	CDS	39599244	39599341	.	-	1	Parent=Os01t0909200-01
Chr01	irgsp1_rep	CDS	39598765	39598988	.	-	2	Parent=Os01t0909200-01
Chr01	irgsp1_rep	CDS	39598471	39598680	.	-	0	Parent=Os01t0909200-01
Chr01	irgsp1_rep	CDS	39597889	39598362	.	-	0	Parent=Os01t0909200-01
Chr01	irgsp1_rep	CDS	39597521	39597802	.	-	0	Parent=Os01t0909200-01
Chr01	irgsp1_rep	CDS	39596918	39597244	.	-	0	Parent=Os01t0909200-01
Chr01	irgsp1_rep	CDS	39596640	39596823	.	-	0	Parent=Os01t0909200-01
Chr01	irgsp1_rep	CDS	39596397	39596508	.	-	2	Parent=Os01t0909200-01
Chr01	irgsp1_rep	CDS	39596086	39596305	.	-	1	Parent=Os01t0909200-01
Chr01	irgsp1_rep	three_prime_UTR	39595682	39596085	.	-	.	Parent=Os01t0909200-01
Chr01	irgsp1_rep	mRNA	39609016	39612236	.	+	.	ID=Os01t0909300-00;Name=Os01t0909300-00;Locus_id=Os01g0909300;Note=Hypothetical conserved gene.;Transcript_evidence=BT033212 (DDBJ);ORF_evidence=NP_001045149.2 (RefSeq);TENOR=Os01t0909300-00;KEGG=Os01t0909300-00
Chr01	irgsp1_rep	CDS	39609016	39609475	.	+	0	Parent=Os01t0909300-00
Chr01	irgsp1_rep	CDS	39609569	39609747	.	+	2	Parent=Os01t0909300-00
Chr01	irgsp1_rep	CDS	39610377	39610457	.	+	0	Parent=Os01t0909300-00
Chr01	irgsp1_rep	CDS	39610569	39610655	.	+	0	Parent=Os01t0909300-00
Chr01	irgsp1_rep	CDS	39610748	39610759	.	+	0	Parent=Os01t0909300-00
Chr01	irgsp1_rep	three_prime_UTR	39610760	39610864	.	+	.	Parent=Os01t0909300-00
Chr01	irgsp1_rep	three_prime_UTR	39610982	39611053	.	+	.	Parent=Os01t0909300-00
Chr01	irgsp1_rep	three_prime_UTR	39611453	39611533	.	+	.	Parent=Os01t0909300-00
Chr01	irgsp1_rep	three_prime_UTR	39611897	39612236	.	+	.	Parent=Os01t0909300-00
Chr01	irgsp1_rep	mRNA	39613030	39614338	.	-	.	ID=Os01t0909400-01;Name=Os01t0909400-01;Locus_id=Os01g0909400;Note=Protein of unknown function DUF868%2C plant family protein.;Transcript_evidence=AK068178 (DDBJ%2C Best hit);ORF_evidence=B8A863 (UniProt);InterPro=Protein of unknown function DUF868%2C plant (IPR008586);NIAS_FLcDNA=J013130C02;Expression=AK068178;TENOR=Os01t0909400-01;KEGG=Os01t0909400-01
Chr01	irgsp1_rep	five_prime_UTR	39614132	39614338	.	-	.	Parent=Os01t0909400-01
Chr01	irgsp1_rep	CDS	39613154	39614131	.	-	0	Parent=Os01t0909400-01
Chr01	irgsp1_rep	three_prime_UTR	39613030	39613153	.	-	.	Parent=Os01t0909400-01
Chr01	irgsp1_rep	mRNA	39616243	39623317	.	-	.	ID=Os01t0909500-02;Name=Os01t0909500-02;Locus_id=Os01g0909500;Note=Hypothetical conserved gene.;Transcript_evidence=AK099909 (DDBJ%2C Best hit);ORF_evidence=B9EVH5 (UniProt);NIAS_FLcDNA=J013116D08;TENOR=Os01t0909500-02;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	39623275	39623317	.	-	.	Parent=Os01t0909500-02
Chr01	irgsp1_rep	CDS	39623256	39623274	.	-	0	Parent=Os01t0909500-02
Chr01	irgsp1_rep	CDS	39623089	39623159	.	-	2	Parent=Os01t0909500-02
Chr01	irgsp1_rep	CDS	39622676	39622904	.	-	0	Parent=Os01t0909500-02
Chr01	irgsp1_rep	CDS	39622543	39622599	.	-	2	Parent=Os01t0909500-02
Chr01	irgsp1_rep	CDS	39620835	39621013	.	-	2	Parent=Os01t0909500-02
Chr01	irgsp1_rep	CDS	39620582	39620737	.	-	0	Parent=Os01t0909500-02
Chr01	irgsp1_rep	three_prime_UTR	39616868	39620581	.	-	.	Parent=Os01t0909500-02
Chr01	irgsp1_rep	three_prime_UTR	39616639	39616771	.	-	.	Parent=Os01t0909500-02
Chr01	irgsp1_rep	three_prime_UTR	39616243	39616556	.	-	.	Parent=Os01t0909500-02
Chr01	irgsp1_rep	mRNA	39618597	39623317	.	-	.	ID=Os01t0909500-03;Name=Os01t0909500-03;Locus_id=Os01g0909500;Note=Similar to cDNA clone:J013116D08%2C full insert sequence.;Transcript_evidence=AK119276 (DDBJ%2C Best hit);ORF_evidence=B7EPQ1 (UniProt);NIAS_FLcDNA=001-130-B08;TENOR=Os01t0909500-03;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	39623275	39623317	.	-	.	Parent=Os01t0909500-03
Chr01	irgsp1_rep	CDS	39623256	39623274	.	-	0	Parent=Os01t0909500-03
Chr01	irgsp1_rep	CDS	39623089	39623159	.	-	2	Parent=Os01t0909500-03
Chr01	irgsp1_rep	CDS	39622676	39622904	.	-	0	Parent=Os01t0909500-03
Chr01	irgsp1_rep	CDS	39622570	39622599	.	-	2	Parent=Os01t0909500-03
Chr01	irgsp1_rep	CDS	39620835	39621013	.	-	2	Parent=Os01t0909500-03
Chr01	irgsp1_rep	CDS	39620582	39620737	.	-	0	Parent=Os01t0909500-03
Chr01	irgsp1_rep	three_prime_UTR	39618597	39620581	.	-	.	Parent=Os01t0909500-03
Chr01	irgsp1_rep	mRNA	39617146	39620583	.	+	.	ID=Os01t0909600-01;Name=Os01t0909600-01;Locus_id=Os01g0909600;Note=Integrase%2C catalytic core domain containing protein.;Transcript_evidence=AK072072 (DDBJ%2C Best hit);ORF_evidence=Q8W153 (UniProt);GO=Biological Process: DNA integration (GO:0015074),Molecular Function: nucleic acid binding (GO:0003676);InterPro=Integrase%2C catalytic core (IPR001584),Retrotransposon gag protein (IPR005162),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J013111N21;Expression=AK072072;TENOR=Os01t0909600-01;KEGG=Os01t0909600-01
Chr01	irgsp1_rep	five_prime_UTR	39617146	39617372	.	+	.	Parent=Os01t0909600-01
Chr01	irgsp1_rep	five_prime_UTR	39617460	39617621	.	+	.	Parent=Os01t0909600-01
Chr01	irgsp1_rep	CDS	39617622	39618617	.	+	0	Parent=Os01t0909600-01
Chr01	irgsp1_rep	three_prime_UTR	39618618	39620583	.	+	.	Parent=Os01t0909600-01
Chr01	irgsp1_rep	mRNA	39654634	39657644	.	-	.	ID=Os01t0910200-01;Name=Os01t0910200-01;Locus_id=Os01g0910200;Note=Hypothetical protein.;Transcript_evidence=AK070012 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023037B16;Expression=AK070012;TENOR=Os01t0910200-01;KEGG=Os01t0910200-01
Chr01	irgsp1_rep	five_prime_UTR	39657439	39657644	.	-	.	Parent=Os01t0910200-01
Chr01	irgsp1_rep	CDS	39657130	39657438	.	-	0	Parent=Os01t0910200-01
Chr01	irgsp1_rep	three_prime_UTR	39656661	39657129	.	-	.	Parent=Os01t0910200-01
Chr01	irgsp1_rep	three_prime_UTR	39654634	39656382	.	-	.	Parent=Os01t0910200-01
Chr01	irgsp1_rep	mRNA	39658258	39659984	.	+	.	ID=Os01t0910300-01;Name=Os01t0910300-01;Locus_id=Os01g0910300;Note=Hypothetical conserved gene.;Transcript_evidence=AK069450 (DDBJ%2C Best hit);ORF_evidence=B8A836 (UniProt);NIAS_FLcDNA=J023019B17;Expression=AK069450;TENOR=Os01t0910300-01;KEGG=Os01t0910300-01
Chr01	irgsp1_rep	five_prime_UTR	39658258	39658354	.	+	.	Parent=Os01t0910300-01
Chr01	irgsp1_rep	CDS	39658355	39658484	.	+	0	Parent=Os01t0910300-01
Chr01	irgsp1_rep	CDS	39658556	39658629	.	+	2	Parent=Os01t0910300-01
Chr01	irgsp1_rep	CDS	39659696	39659719	.	+	0	Parent=Os01t0910300-01
Chr01	irgsp1_rep	three_prime_UTR	39659720	39659984	.	+	.	Parent=Os01t0910300-01
Chr01	irgsp1_rep	mRNA	39666100	39670720	.	+	.	ID=Os01t0910400-00;Name=Os01t0910400-00;Locus_id=Os01g0910400;Note=Similar to lysine ketoglutarate reductase trans-splicing related 1.;Transcript_evidence=CT836535 (DDBJ%2C Best hit);ORF_evidence=B6TPP1 (UniProt);TENOR=Os01t0910400-00;KEGG=Os01t0910400-00
Chr01	irgsp1_rep	five_prime_UTR	39666100	39666537	.	+	.	Parent=Os01t0910400-00
Chr01	irgsp1_rep	CDS	39666538	39666573	.	+	0	Parent=Os01t0910400-00
Chr01	irgsp1_rep	CDS	39666585	39666669	.	+	0	Parent=Os01t0910400-00
Chr01	irgsp1_rep	CDS	39666932	39667047	.	+	2	Parent=Os01t0910400-00
Chr01	irgsp1_rep	CDS	39667131	39667274	.	+	0	Parent=Os01t0910400-00
Chr01	irgsp1_rep	CDS	39667684	39667763	.	+	0	Parent=Os01t0910400-00
Chr01	irgsp1_rep	CDS	39667888	39667971	.	+	1	Parent=Os01t0910400-00
Chr01	irgsp1_rep	CDS	39668164	39668194	.	+	1	Parent=Os01t0910400-00
Chr01	irgsp1_rep	three_prime_UTR	39668195	39668272	.	+	.	Parent=Os01t0910400-00
Chr01	irgsp1_rep	three_prime_UTR	39668377	39668478	.	+	.	Parent=Os01t0910400-00
Chr01	irgsp1_rep	three_prime_UTR	39668557	39668670	.	+	.	Parent=Os01t0910400-00
Chr01	irgsp1_rep	three_prime_UTR	39668758	39668814	.	+	.	Parent=Os01t0910400-00
Chr01	irgsp1_rep	three_prime_UTR	39669064	39669130	.	+	.	Parent=Os01t0910400-00
Chr01	irgsp1_rep	three_prime_UTR	39669198	39669251	.	+	.	Parent=Os01t0910400-00
Chr01	irgsp1_rep	three_prime_UTR	39669640	39669714	.	+	.	Parent=Os01t0910400-00
Chr01	irgsp1_rep	three_prime_UTR	39669798	39669833	.	+	.	Parent=Os01t0910400-00
Chr01	irgsp1_rep	three_prime_UTR	39670231	39670655	.	+	.	Parent=Os01t0910400-00
Chr01	irgsp1_rep	three_prime_UTR	39670664	39670720	.	+	.	Parent=Os01t0910400-00
Chr01	irgsp1_rep	mRNA	39668420	39670406	.	-	.	ID=Os01t0910450-00;Name=Os01t0910450-00;Locus_id=Os01g0910450;Note=Non-protein coding transcript.;Transcript_evidence=BT016843 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0910450-00
Chr01	irgsp1_rep	exon	39670204	39670406	.	-	.	Parent=Os01t0910450-00
Chr01	irgsp1_rep	exon	39669638	39669723	.	-	.	Parent=Os01t0910450-00
Chr01	irgsp1_rep	exon	39669064	39669176	.	-	.	Parent=Os01t0910450-00
Chr01	irgsp1_rep	exon	39668764	39668814	.	-	.	Parent=Os01t0910450-00
Chr01	irgsp1_rep	exon	39668555	39668675	.	-	.	Parent=Os01t0910450-00
Chr01	irgsp1_rep	exon	39668420	39668476	.	-	.	Parent=Os01t0910450-00
Chr01	irgsp1_rep	mRNA	39670759	39672253	.	-	.	ID=Os01t0910500-01;Name=Os01t0910500-01;Locus_id=Os01g0910500;Note=Conserved hypothetical protein.;Transcript_evidence=AK072044 (DDBJ%2C Best hit),AK099048 (DDBJ%2C Best hit);ORF_evidence=A2WY68 (UniProt);NIAS_FLcDNA=J013108J05,J013149K21;Expression=AK072044;TENOR=Os01t0910500-01;KEGG=Os01t0910500-01
Chr01	irgsp1_rep	five_prime_UTR	39672187	39672253	.	-	.	Parent=Os01t0910500-01
Chr01	irgsp1_rep	CDS	39670960	39672186	.	-	0	Parent=Os01t0910500-01
Chr01	irgsp1_rep	three_prime_UTR	39670759	39670959	.	-	.	Parent=Os01t0910500-01
Chr01	irgsp1_rep	mRNA	39679510	39680136	.	-	.	ID=Os01t0910800-00;Name=Os01t0910800-00;Locus_id=Os01g0910800;Note=Conserved hypothetical protein.;Transcript_evidence=CT834834 (DDBJ%2C Best hit);ORF_evidence=NP_001172704.1 (RefSeq);TENOR=Os01t0910800-00;KEGG=Os01t0910800-00
Chr01	irgsp1_rep	five_prime_UTR	39680080	39680136	.	-	.	Parent=Os01t0910800-00
Chr01	irgsp1_rep	CDS	39679771	39680079	.	-	0	Parent=Os01t0910800-00
Chr01	irgsp1_rep	three_prime_UTR	39679762	39679770	.	-	.	Parent=Os01t0910800-00
Chr01	irgsp1_rep	three_prime_UTR	39679716	39679737	.	-	.	Parent=Os01t0910800-00
Chr01	irgsp1_rep	three_prime_UTR	39679510	39679708	.	-	.	Parent=Os01t0910800-00
Chr01	irgsp1_rep	mRNA	39682842	39683433	.	-	.	ID=Os01t0910900-01;Name=Os01t0910900-01;Locus_id=Os01g0910900;Note=Conserved hypothetical protein.;Transcript_evidence=AK240784 (DDBJ%2C Best hit);ORF_evidence=NP_001045156.1 (RefSeq);NIAS_FLcDNA=J053089D02;TENOR=Os01t0910900-01;KEGG=Os01t0910900-01
Chr01	irgsp1_rep	five_prime_UTR	39683357	39683433	.	-	.	Parent=Os01t0910900-01
Chr01	irgsp1_rep	CDS	39683081	39683356	.	-	0	Parent=Os01t0910900-01
Chr01	irgsp1_rep	three_prime_UTR	39682842	39683080	.	-	.	Parent=Os01t0910900-01
Chr01	irgsp1_rep	mRNA	39684691	39687171	.	-	.	ID=Os01t0911000-01;Name=Os01t0911000-01;Locus_id=Os01g0911000;Note=Sas10/Utp3/C1D domain containing protein.;Transcript_evidence=AK103283 (DDBJ%2C Best hit);ORF_evidence=NP_973785.1 (RefSeq);InterPro=Sas10/Utp3/C1D (IPR007146);NIAS_FLcDNA=J033124M13;TENOR=Os01t0911000-01;KEGG=Os01t0911000-01
Chr01	irgsp1_rep	five_prime_UTR	39687008	39687171	.	-	.	Parent=Os01t0911000-01
Chr01	irgsp1_rep	CDS	39686840	39687007	.	-	0	Parent=Os01t0911000-01
Chr01	irgsp1_rep	CDS	39686562	39686741	.	-	0	Parent=Os01t0911000-01
Chr01	irgsp1_rep	CDS	39686273	39686464	.	-	0	Parent=Os01t0911000-01
Chr01	irgsp1_rep	CDS	39685472	39685639	.	-	0	Parent=Os01t0911000-01
Chr01	irgsp1_rep	CDS	39685213	39685367	.	-	0	Parent=Os01t0911000-01
Chr01	irgsp1_rep	CDS	39684922	39685066	.	-	1	Parent=Os01t0911000-01
Chr01	irgsp1_rep	three_prime_UTR	39684691	39684921	.	-	.	Parent=Os01t0911000-01
Chr01	irgsp1_rep	mRNA	39684584	39685251	.	-	.	ID=Os01t0911000-02;Name=Os01t0911000-02;Locus_id=Os01g0911000;Note=Hypothetical conserved gene.;Transcript_evidence=AK064047 (DDBJ%2C Best hit);ORF_evidence=NP_001045157.1 (RefSeq);NIAS_FLcDNA=001-125-D10;TENOR=Os01t0911000-02;KEGG=Os01t0911000-02
Chr01	irgsp1_rep	five_prime_UTR	39685251	39685251	.	-	.	Parent=Os01t0911000-02
Chr01	irgsp1_rep	CDS	39685213	39685250	.	-	0	Parent=Os01t0911000-02
Chr01	irgsp1_rep	CDS	39684922	39685066	.	-	1	Parent=Os01t0911000-02
Chr01	irgsp1_rep	three_prime_UTR	39684584	39684921	.	-	.	Parent=Os01t0911000-02
Chr01	irgsp1_rep	mRNA	39688395	39692555	.	-	.	ID=Os01t0911100-01;Name=Os01t0911100-01;Locus_id=Os01g0911100;Oryzabase Gene Symbol Synonym(s)=OsRH30;Oryzabase Gene Name Synonym(s)=RNA helicase 30;Note=Similar to DEAD box RNA helicase1.;Transcript_evidence=AK064782 (DDBJ%2C Best hit);ORF_evidence=NP_001105241.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=RNA helicase%2C ATP-dependent%2C DEAD-box%2C conserved site (IPR000629),Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=J013000B12;Oryzabase=19141;TENOR=Os01t0911100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	39692411	39692555	.	-	.	Parent=Os01t0911100-01
Chr01	irgsp1_rep	CDS	39692355	39692410	.	-	0	Parent=Os01t0911100-01
Chr01	irgsp1_rep	CDS	39691820	39692256	.	-	1	Parent=Os01t0911100-01
Chr01	irgsp1_rep	CDS	39691524	39691703	.	-	2	Parent=Os01t0911100-01
Chr01	irgsp1_rep	CDS	39691282	39691443	.	-	2	Parent=Os01t0911100-01
Chr01	irgsp1_rep	CDS	39691052	39691206	.	-	2	Parent=Os01t0911100-01
Chr01	irgsp1_rep	CDS	39690867	39690959	.	-	0	Parent=Os01t0911100-01
Chr01	irgsp1_rep	CDS	39690678	39690763	.	-	0	Parent=Os01t0911100-01
Chr01	irgsp1_rep	CDS	39690312	39690576	.	-	1	Parent=Os01t0911100-01
Chr01	irgsp1_rep	three_prime_UTR	39688856	39690311	.	-	.	Parent=Os01t0911100-01
Chr01	irgsp1_rep	three_prime_UTR	39688395	39688771	.	-	.	Parent=Os01t0911100-01
Chr01	irgsp1_rep	mRNA	39688363	39690738	.	-	.	ID=Os01t0911100-02;Name=Os01t0911100-02;Locus_id=Os01g0911100;Oryzabase Gene Symbol Synonym(s)=OsRH30;Oryzabase Gene Name Synonym(s)=RNA helicase 30;Note=Similar to DEAD box RNA helicase1.;Transcript_evidence=AK062123 (DDBJ%2C Best hit);ORF_evidence=NP_001105241.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524);InterPro=Helicase%2C C-terminal (IPR001650);NIAS_FLcDNA=001-045-D03;Oryzabase=19141;Expression=AK062123;TENOR=Os01t0911100-02;KEGG=Os01t0911100-02 (EC:3.6.4.13)
Chr01	irgsp1_rep	five_prime_UTR	39690737	39690738	.	-	.	Parent=Os01t0911100-02
Chr01	irgsp1_rep	CDS	39690678	39690736	.	-	0	Parent=Os01t0911100-02
Chr01	irgsp1_rep	CDS	39690350	39690576	.	-	1	Parent=Os01t0911100-02
Chr01	irgsp1_rep	CDS	39688856	39689086	.	-	2	Parent=Os01t0911100-02
Chr01	irgsp1_rep	CDS	39688683	39688771	.	-	2	Parent=Os01t0911100-02
Chr01	irgsp1_rep	three_prime_UTR	39688643	39688682	.	-	.	Parent=Os01t0911100-02
Chr01	irgsp1_rep	three_prime_UTR	39688363	39688559	.	-	.	Parent=Os01t0911100-02
Chr01	irgsp1_rep	mRNA	39690105	39690626	.	+	.	ID=Os01t0911133-00;Name=Os01t0911133-00;Locus_id=Os01g0911133;Note=Non-protein coding transcript.;Transcript_evidence=EU950192 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0911133-00
Chr01	irgsp1_rep	exon	39690105	39690422	.	+	.	Parent=Os01t0911133-00
Chr01	irgsp1_rep	exon	39690508	39690626	.	+	.	Parent=Os01t0911133-00
Chr01	irgsp1_rep	mRNA	39696056	39703152	.	+	.	ID=Os01t0911200-01;Name=Os01t0911200-01;Locus_id=Os01g0911200;Oryzabase Gene Name Synonym(s)=Glycosyltransferase 63 kDa subunit precursor%2C Ribophorin II;Note=Ribophorin II family protein.;Transcript_evidence=AK101333 (DDBJ%2C Best hit);ORF_evidence=NP_193847.2 (RefSeq);GO=Biological Process: protein N-linked glycosylation via asparagine (GO:0018279),Cellular Component: endoplasmic reticulum membrane (GO:0005789),Cellular Component: oligosaccharyltransferase complex (GO:0008250),Molecular Function: dolichyl-diphosphooligosaccharide-protein glycotransferase activity (GO:0004579);InterPro=Ribophorin II (IPR008814);NIAS_FLcDNA=J033034I01;Oryzabase=15235;Expression=AK101333;TENOR=Os01t0911200-01;KEGG=Os01t0911200-01
Chr01	irgsp1_rep	five_prime_UTR	39696056	39696150	.	+	.	Parent=Os01t0911200-01
Chr01	irgsp1_rep	CDS	39696151	39696314	.	+	0	Parent=Os01t0911200-01
Chr01	irgsp1_rep	CDS	39696469	39696664	.	+	1	Parent=Os01t0911200-01
Chr01	irgsp1_rep	CDS	39696755	39696844	.	+	0	Parent=Os01t0911200-01
Chr01	irgsp1_rep	CDS	39696962	39697018	.	+	0	Parent=Os01t0911200-01
Chr01	irgsp1_rep	CDS	39697132	39697201	.	+	0	Parent=Os01t0911200-01
Chr01	irgsp1_rep	CDS	39697488	39697552	.	+	2	Parent=Os01t0911200-01
Chr01	irgsp1_rep	CDS	39698149	39698203	.	+	0	Parent=Os01t0911200-01
Chr01	irgsp1_rep	CDS	39698445	39698572	.	+	2	Parent=Os01t0911200-01
Chr01	irgsp1_rep	CDS	39698660	39698773	.	+	0	Parent=Os01t0911200-01
Chr01	irgsp1_rep	CDS	39698944	39699015	.	+	0	Parent=Os01t0911200-01
Chr01	irgsp1_rep	CDS	39699464	39699565	.	+	0	Parent=Os01t0911200-01
Chr01	irgsp1_rep	CDS	39699662	39699751	.	+	0	Parent=Os01t0911200-01
Chr01	irgsp1_rep	CDS	39699825	39699973	.	+	0	Parent=Os01t0911200-01
Chr01	irgsp1_rep	CDS	39700361	39700472	.	+	1	Parent=Os01t0911200-01
Chr01	irgsp1_rep	CDS	39700555	39700641	.	+	0	Parent=Os01t0911200-01
Chr01	irgsp1_rep	CDS	39702073	39702153	.	+	0	Parent=Os01t0911200-01
Chr01	irgsp1_rep	CDS	39702222	39702446	.	+	0	Parent=Os01t0911200-01
Chr01	irgsp1_rep	CDS	39702556	39702678	.	+	0	Parent=Os01t0911200-01
Chr01	irgsp1_rep	CDS	39702762	39702878	.	+	0	Parent=Os01t0911200-01
Chr01	irgsp1_rep	three_prime_UTR	39702879	39703152	.	+	.	Parent=Os01t0911200-01
Chr01	irgsp1_rep	mRNA	39702320	39703135	.	-	.	ID=Os01t0911250-00;Name=Os01t0911250-00;Locus_id=Os01g0911250;Note=Non-protein coding transcript.;Transcript_evidence=BT016657 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0911250-00
Chr01	irgsp1_rep	exon	39702742	39703135	.	-	.	Parent=Os01t0911250-00
Chr01	irgsp1_rep	exon	39702555	39702663	.	-	.	Parent=Os01t0911250-00
Chr01	irgsp1_rep	exon	39702320	39702445	.	-	.	Parent=Os01t0911250-00
Chr01	irgsp1_rep	mRNA	39703410	39706057	.	-	.	ID=Os01t0911300-01;Name=Os01t0911300-01;Locus_id=Os01g0911300;CGSNL Gene Symbol=ABCB24;CGSNL Gene Name=ABC TRANSPORTER B FAMILY MEMBER 24;Oryzabase Gene Symbol Synonym(s)=OsABCB24;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCB subgroup member 24;Note=Similar to Transporter associated with antigen processing-like protein.;Transcript_evidence=AK058462 (DDBJ%2C Best hit);ORF_evidence=D8L9J2 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);NIAS_FLcDNA=001-016-A04;Oryzabase=11943;Expression=AK058462;TENOR=Os01t0911300-01;KEGG=Os01t0911300-01
Chr01	irgsp1_rep	CDS	39705953	39706057	.	-	0	Parent=Os01t0911300-01
Chr01	irgsp1_rep	CDS	39705594	39705806	.	-	0	Parent=Os01t0911300-01
Chr01	irgsp1_rep	CDS	39705394	39705465	.	-	0	Parent=Os01t0911300-01
Chr01	irgsp1_rep	CDS	39705084	39705140	.	-	0	Parent=Os01t0911300-01
Chr01	irgsp1_rep	CDS	39704862	39704936	.	-	0	Parent=Os01t0911300-01
Chr01	irgsp1_rep	CDS	39704679	39704753	.	-	0	Parent=Os01t0911300-01
Chr01	irgsp1_rep	CDS	39704320	39704601	.	-	0	Parent=Os01t0911300-01
Chr01	irgsp1_rep	CDS	39704156	39704220	.	-	0	Parent=Os01t0911300-01
Chr01	irgsp1_rep	CDS	39704021	39704081	.	-	1	Parent=Os01t0911300-01
Chr01	irgsp1_rep	CDS	39703820	39703903	.	-	0	Parent=Os01t0911300-01
Chr01	irgsp1_rep	three_prime_UTR	39703410	39703819	.	-	.	Parent=Os01t0911300-01
Chr01	irgsp1_rep	mRNA	39723186	39726984	.	-	.	ID=Os01t0911700-01;Name=Os01t0911700-01;Locus_id=Os01g0911700;RAP-DB Gene Symbol Synonym(s)=OsVP1;RAP-DB Gene Name Synonym(s)=Viviparous1;CGSNL Gene Symbol=VP1;CGSNL Gene Name=VIVIPAROUS 1;Oryzabase Gene Symbol Synonym(s)=Vp1* (OSVP1)%2C OsVP1%2C OsVp1%2C Vp1%2C ABI3%2C OsABI3%2C OsLFL4%2C OsVp-1%2C OSVP1;Oryzabase Gene Name Synonym(s)=Viviparous-1%2C Protein viviparous homolog%2C B3 domain-containing protein VP1%2C Transcription activator VP1-rice%2C LEAFY COTYLEDON 2 and FUSCA 3-LIKE 4;Note=B3 domain-containing transcriptional activator%2C Control of seed dormancy;Transcript_evidence=AK073805;ORF_evidence=P37398-2;GO=Molecular Function: DNA binding (GO:0003677);InterPro=DNA-binding pseudobarrel domain superfamily (IPR015300),B3 DNA binding domain (IPR003340);NIAS_FLcDNA=J033069I02;Manual Curation=September 28%2C 2020;Literature_PMID=DOI:10.1016/j.cj.2020.06.005;Oryzabase=2104;Expression=AK073805;TENOR=Os01t0911700-01;KEGG=Os01t0911700-01;Subcellular location=nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	39726875	39726984	.	-	.	Parent=Os01t0911700-01
Chr01	irgsp1_rep	CDS	39726849	39726874	.	-	0	Parent=Os01t0911700-01
Chr01	irgsp1_rep	CDS	39725297	39726779	.	-	1	Parent=Os01t0911700-01
Chr01	irgsp1_rep	CDS	39725012	39725101	.	-	0	Parent=Os01t0911700-01
Chr01	irgsp1_rep	CDS	39724694	39724791	.	-	0	Parent=Os01t0911700-01
Chr01	irgsp1_rep	CDS	39724193	39724239	.	-	1	Parent=Os01t0911700-01
Chr01	irgsp1_rep	CDS	39723997	39724073	.	-	2	Parent=Os01t0911700-01
Chr01	irgsp1_rep	CDS	39723464	39723757	.	-	0	Parent=Os01t0911700-01
Chr01	irgsp1_rep	three_prime_UTR	39723186	39723463	.	-	.	Parent=Os01t0911700-01
Chr01	irgsp1_rep	mRNA	39723171	39726874	.	-	.	ID=Os01t0911700-02;Name=Os01t0911700-02;Locus_id=Os01g0911700;CGSNL Gene Symbol=VP1;CGSNL Gene Name=VIVIPAROUS 1;Oryzabase Gene Symbol Synonym(s)=Vp1* (OSVP1)%2C OsVP1%2C OsVp1%2C Vp1%2C ABI3%2C OsABI3%2C OsLFL4%2C OsVp-1%2C OSVP1;Oryzabase Gene Name Synonym(s)=Viviparous-1%2C Protein viviparous homolog%2C B3 domain-containing protein VP1%2C Transcription activator VP1-rice%2C LEAFY COTYLEDON 2 and FUSCA 3-LIKE 4;Note=Transcription activator VP1-rice.;Transcript_evidence=AK105441 (DDBJ%2C Best hit);ORF_evidence=P37398 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=001-125-A06;Oryzabase=2104;Expression=AK105441;TENOR=Os01t0911700-02;KEGG=Os01t0911700-02
Chr01	irgsp1_rep	CDS	39725297	39726874	.	-	0	Parent=Os01t0911700-02
Chr01	irgsp1_rep	CDS	39725012	39725101	.	-	0	Parent=Os01t0911700-02
Chr01	irgsp1_rep	CDS	39724694	39724791	.	-	0	Parent=Os01t0911700-02
Chr01	irgsp1_rep	CDS	39724193	39724239	.	-	1	Parent=Os01t0911700-02
Chr01	irgsp1_rep	CDS	39723997	39724073	.	-	2	Parent=Os01t0911700-02
Chr01	irgsp1_rep	CDS	39723464	39723757	.	-	0	Parent=Os01t0911700-02
Chr01	irgsp1_rep	three_prime_UTR	39723171	39723463	.	-	.	Parent=Os01t0911700-02
Chr01	irgsp1_rep	mRNA	39730285	39736715	.	+	.	ID=Os01t0911800-01;Name=Os01t0911800-01;Locus_id=Os01g0911800;Note=Similar to Heavy meromyosin-like protein (Fragment).;Transcript_evidence=AK065451 (DDBJ%2C Best hit);ORF_evidence=Q84VA3 (UniProt);NIAS_FLcDNA=J013021C09;Expression=AK065451;TENOR=Os01t0911800-01;KEGG=Os01t0911800-01
Chr01	irgsp1_rep	five_prime_UTR	39730285	39730336	.	+	.	Parent=Os01t0911800-01
Chr01	irgsp1_rep	CDS	39730337	39730432	.	+	0	Parent=Os01t0911800-01
Chr01	irgsp1_rep	CDS	39730771	39731413	.	+	0	Parent=Os01t0911800-01
Chr01	irgsp1_rep	CDS	39731514	39732016	.	+	2	Parent=Os01t0911800-01
Chr01	irgsp1_rep	CDS	39732527	39732646	.	+	0	Parent=Os01t0911800-01
Chr01	irgsp1_rep	CDS	39733097	39733162	.	+	0	Parent=Os01t0911800-01
Chr01	irgsp1_rep	CDS	39733887	39733997	.	+	0	Parent=Os01t0911800-01
Chr01	irgsp1_rep	CDS	39734391	39734467	.	+	0	Parent=Os01t0911800-01
Chr01	irgsp1_rep	CDS	39734737	39734804	.	+	1	Parent=Os01t0911800-01
Chr01	irgsp1_rep	CDS	39735125	39735238	.	+	2	Parent=Os01t0911800-01
Chr01	irgsp1_rep	CDS	39735334	39735515	.	+	2	Parent=Os01t0911800-01
Chr01	irgsp1_rep	CDS	39735667	39735735	.	+	0	Parent=Os01t0911800-01
Chr01	irgsp1_rep	CDS	39736035	39736190	.	+	0	Parent=Os01t0911800-01
Chr01	irgsp1_rep	CDS	39736398	39736475	.	+	0	Parent=Os01t0911800-01
Chr01	irgsp1_rep	three_prime_UTR	39736476	39736715	.	+	.	Parent=Os01t0911800-01
Chr01	irgsp1_rep	mRNA	39737140	39741758	.	-	.	ID=Os01t0911900-01;Name=Os01t0911900-01;Locus_id=Os01g0911900;Note=Similar to Uncharacterized ACR%2C COG1565 family protein.;Transcript_evidence=AK241468 (DDBJ%2C Best hit);ORF_evidence=B6TEQ7 (UniProt);InterPro=Protein of unknown function DUF185 (IPR003788);NIAS_FLcDNA=J065164N12;TENOR=Os01t0911900-01;KEGG=Os01t0911900-01
Chr01	irgsp1_rep	five_prime_UTR	39741707	39741758	.	-	.	Parent=Os01t0911900-01
Chr01	irgsp1_rep	CDS	39741587	39741706	.	-	0	Parent=Os01t0911900-01
Chr01	irgsp1_rep	CDS	39741380	39741491	.	-	0	Parent=Os01t0911900-01
Chr01	irgsp1_rep	CDS	39740988	39741070	.	-	2	Parent=Os01t0911900-01
Chr01	irgsp1_rep	CDS	39740839	39740904	.	-	0	Parent=Os01t0911900-01
Chr01	irgsp1_rep	CDS	39740461	39740561	.	-	0	Parent=Os01t0911900-01
Chr01	irgsp1_rep	CDS	39740261	39740379	.	-	1	Parent=Os01t0911900-01
Chr01	irgsp1_rep	CDS	39739918	39739958	.	-	2	Parent=Os01t0911900-01
Chr01	irgsp1_rep	CDS	39739194	39739282	.	-	0	Parent=Os01t0911900-01
Chr01	irgsp1_rep	CDS	39738372	39738552	.	-	1	Parent=Os01t0911900-01
Chr01	irgsp1_rep	CDS	39738131	39738247	.	-	0	Parent=Os01t0911900-01
Chr01	irgsp1_rep	CDS	39737998	39738042	.	-	0	Parent=Os01t0911900-01
Chr01	irgsp1_rep	CDS	39737658	39737789	.	-	0	Parent=Os01t0911900-01
Chr01	irgsp1_rep	CDS	39737396	39737530	.	-	0	Parent=Os01t0911900-01
Chr01	irgsp1_rep	three_prime_UTR	39737140	39737395	.	-	.	Parent=Os01t0911900-01
Chr01	irgsp1_rep	mRNA	39762881	39763714	.	+	.	ID=Os01t0912400-00;Name=Os01t0912400-00;Locus_id=Os01g0912400;CGSNL Gene Symbol=MADS97;CGSNL Gene Name=MADS BOX GENE 97;Oryzabase Gene Symbol Synonym(s)=OsMADS97;Oryzabase Gene Name Synonym(s)=MADS box gene97%2C MADS box gene 97%2C MADS-box transcription factor 97;Note=Transcription factor%2C MADS-box domain containing protein.;Transcript_evidence=tplb0015b14 (Wheat FLcDNA);ORF_evidence=Q5N7X4 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box (IPR002100);Oryzabase=12333;TENOR=Os01t0912400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	39762881	39763714	.	+	0	Parent=Os01t0912400-00
Chr01	irgsp1_rep	mRNA	39775467	39776785	.	+	.	ID=Os01t0912600-01;Name=Os01t0912600-01;Locus_id=Os01g0912600;Note=Similar to SRD2 (SHOOT REDIFFERENTIATION DEFECTIVE 2)%3B DNA binding.;Transcript_evidence=AK063179 (DDBJ%2C Best hit);ORF_evidence=NP_001117373.1 (RefSeq);InterPro=snRNA-activating protein complex%2C subunit 3%2C C-terminal (IPR022042);NIAS_FLcDNA=001-112-A09;TENOR=Os01t0912600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	39775467	39775467	.	+	.	Parent=Os01t0912600-01
Chr01	irgsp1_rep	CDS	39775468	39775509	.	+	0	Parent=Os01t0912600-01
Chr01	irgsp1_rep	CDS	39775604	39775699	.	+	0	Parent=Os01t0912600-01
Chr01	irgsp1_rep	CDS	39775793	39775918	.	+	0	Parent=Os01t0912600-01
Chr01	irgsp1_rep	CDS	39775997	39776254	.	+	0	Parent=Os01t0912600-01
Chr01	irgsp1_rep	CDS	39776489	39776770	.	+	0	Parent=Os01t0912600-01
Chr01	irgsp1_rep	three_prime_UTR	39776771	39776785	.	+	.	Parent=Os01t0912600-01
Chr01	irgsp1_rep	mRNA	39777762	39779892	.	+	.	ID=Os01t0912700-01;Name=Os01t0912700-01;Locus_id=Os01g0912700;Note=Similar to T23K8.14 protein.;Transcript_evidence=AK068528 (DDBJ%2C Best hit);ORF_evidence=Q9S9K3 (UniProt);InterPro=Protein of unknown function DUF2358 (IPR018790);NIAS_FLcDNA=J013155P10;Expression=AK068528;TENOR=Os01t0912700-01;KEGG=Os01t0912700-01
Chr01	irgsp1_rep	five_prime_UTR	39777762	39777765	.	+	.	Parent=Os01t0912700-01
Chr01	irgsp1_rep	CDS	39777766	39777931	.	+	0	Parent=Os01t0912700-01
Chr01	irgsp1_rep	CDS	39778025	39778254	.	+	2	Parent=Os01t0912700-01
Chr01	irgsp1_rep	CDS	39778906	39778986	.	+	0	Parent=Os01t0912700-01
Chr01	irgsp1_rep	CDS	39779209	39779565	.	+	0	Parent=Os01t0912700-01
Chr01	irgsp1_rep	CDS	39779683	39779787	.	+	0	Parent=Os01t0912700-01
Chr01	irgsp1_rep	three_prime_UTR	39779788	39779892	.	+	.	Parent=Os01t0912700-01
Chr01	irgsp1_rep	mRNA	39789653	39791187	.	+	.	ID=Os01t0912850-00;Name=Os01t0912850-00;Locus_id=Os01g0912850;Note=Conserved hypothetical protein.;Transcript_evidence=FP092817 (DDBJ);ORF_evidence=A2WY83 (UniProt);TENOR=Os01t0912850-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	39789653	39789944	.	+	0	Parent=Os01t0912850-00
Chr01	irgsp1_rep	CDS	39790667	39791187	.	+	2	Parent=Os01t0912850-00
Chr01	irgsp1_rep	mRNA	39794226	39799341	.	-	.	ID=Os01t0912900-01;Name=Os01t0912900-01;Locus_id=Os01g0912900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK119446 (DDBJ%2C Best hit);ORF_evidence=A2WY85 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-133-D02;Expression=AK119446;TENOR=Os01t0912900-01;KEGG=Os01t0912900-01
Chr01	irgsp1_rep	five_prime_UTR	39798476	39799341	.	-	.	Parent=Os01t0912900-01
Chr01	irgsp1_rep	CDS	39796874	39798475	.	-	0	Parent=Os01t0912900-01
Chr01	irgsp1_rep	three_prime_UTR	39796769	39796873	.	-	.	Parent=Os01t0912900-01
Chr01	irgsp1_rep	three_prime_UTR	39796061	39796229	.	-	.	Parent=Os01t0912900-01
Chr01	irgsp1_rep	three_prime_UTR	39794226	39795523	.	-	.	Parent=Os01t0912900-01
Chr01	irgsp1_rep	mRNA	39794547	39795809	.	+	.	ID=Os01t0913000-01;Name=Os01t0913000-01;Locus_id=Os01g0913000;CGSNL Gene Symbol=TRXH10;CGSNL Gene Name=THIOREDOXIN H-TYPE 10;Oryzabase Gene Symbol Synonym(s)=OsTRXh10%2C OsTRX2%2C TRX2%2C TRXF%2C OsTRXF;Oryzabase Gene Name Synonym(s)=Thioredoxin H-type 10%2C H-type Thioredoxin 10;Note=Similar to Thioredoxin F-type 2%2C chloroplast precursor (TRX-F2).;Transcript_evidence=AK101264 (DDBJ%2C Best hit);ORF_evidence=B6TLU2 (UniProt);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Thioredoxin (IPR005746),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766),Thioredoxin%2C conserved site (IPR017937);NIAS_FLcDNA=J033032K11;Oryzabase=9913;Expression=AK101264;TENOR=Os01t0913000-01;KEGG=Os01t0913000-01
Chr01	irgsp1_rep	five_prime_UTR	39794547	39794635	.	+	.	Parent=Os01t0913000-01
Chr01	irgsp1_rep	CDS	39794636	39794964	.	+	0	Parent=Os01t0913000-01
Chr01	irgsp1_rep	CDS	39795160	39795259	.	+	1	Parent=Os01t0913000-01
Chr01	irgsp1_rep	CDS	39795381	39795515	.	+	0	Parent=Os01t0913000-01
Chr01	irgsp1_rep	three_prime_UTR	39795516	39795809	.	+	.	Parent=Os01t0913000-01
Chr01	irgsp1_rep	mRNA	39801475	39802517	.	-	.	ID=Os01t0913100-01;Name=Os01t0913100-01;Locus_id=Os01g0913100;Note=Protein of unknown function DUF538 family protein.;Transcript_evidence=AK070387 (DDBJ%2C Best hit);ORF_evidence=D8L9H8 (UniProt);InterPro=Protein of unknown function DUF538 (IPR007493);NIAS_FLcDNA=J023051C24;Expression=AK070387;TENOR=Os01t0913100-01;KEGG=Os01t0913100-01
Chr01	irgsp1_rep	five_prime_UTR	39802385	39802517	.	-	.	Parent=Os01t0913100-01
Chr01	irgsp1_rep	CDS	39801917	39802384	.	-	0	Parent=Os01t0913100-01
Chr01	irgsp1_rep	CDS	39801780	39801827	.	-	0	Parent=Os01t0913100-01
Chr01	irgsp1_rep	three_prime_UTR	39801475	39801779	.	-	.	Parent=Os01t0913100-01
Chr01	irgsp1_rep	mRNA	39810307	39815206	.	+	.	ID=Os01t0913300-01;Name=Os01t0913300-01;Locus_id=Os01g0913300;CGSNL Gene Symbol=NRT1.7;CGSNL Gene Name=NITRATE TRANSPORTER 1.7;Oryzabase Gene Symbol Synonym(s)=OsNRT1.7;Oryzabase Gene Name Synonym(s)=nitrate transporter 1.7;Note=TGF-beta receptor%2C type I/II extracellular region family protein.;Transcript_evidence=AK100698 (DDBJ%2C Best hit);ORF_evidence=E4MWJ1 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J023114K11;Oryzabase=19904;Expression=AK100698;TENOR=Os01t0913300-01;KEGG=Os01t0913300-01
Chr01	irgsp1_rep	five_prime_UTR	39810307	39810487	.	+	.	Parent=Os01t0913300-01
Chr01	irgsp1_rep	CDS	39810488	39810593	.	+	0	Parent=Os01t0913300-01
Chr01	irgsp1_rep	CDS	39812079	39812296	.	+	2	Parent=Os01t0913300-01
Chr01	irgsp1_rep	CDS	39812597	39813177	.	+	0	Parent=Os01t0913300-01
Chr01	irgsp1_rep	CDS	39813980	39814877	.	+	1	Parent=Os01t0913300-01
Chr01	irgsp1_rep	three_prime_UTR	39814878	39815206	.	+	.	Parent=Os01t0913300-01
Chr01	irgsp1_rep	mRNA	39815621	39819555	.	-	.	ID=Os01t0913400-01;Name=Os01t0913400-01;Locus_id=Os01g0913400;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK099881 (DDBJ%2C Best hit);ORF_evidence=A3A0U8 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=Pentatricopeptide repeat (IPR002885),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013111N07;Expression=AK099881;TENOR=Os01t0913400-01;KEGG=Os01t0913400-01
Chr01	irgsp1_rep	five_prime_UTR	39819494	39819555	.	-	.	Parent=Os01t0913400-01
Chr01	irgsp1_rep	CDS	39819307	39819493	.	-	0	Parent=Os01t0913400-01
Chr01	irgsp1_rep	CDS	39819114	39819182	.	-	2	Parent=Os01t0913400-01
Chr01	irgsp1_rep	CDS	39817126	39819008	.	-	2	Parent=Os01t0913400-01
Chr01	irgsp1_rep	three_prime_UTR	39816815	39817125	.	-	.	Parent=Os01t0913400-01
Chr01	irgsp1_rep	three_prime_UTR	39815762	39815868	.	-	.	Parent=Os01t0913400-01
Chr01	irgsp1_rep	three_prime_UTR	39815621	39815660	.	-	.	Parent=Os01t0913400-01
Chr01	irgsp1_rep	mRNA	39811724	39817613	.	-	.	ID=Os01t0913400-02;Name=Os01t0913400-02;Locus_id=Os01g0913400;Note=Hypothetical conserved gene.;Transcript_evidence=AK064467 (DDBJ%2C Best hit);ORF_evidence=A3A0U8 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=002-110-G11;Expression=AK064467;TENOR=Os01t0913400-02;KEGG=Os01t0913400-02
Chr01	irgsp1_rep	five_prime_UTR	39817612	39817613	.	-	.	Parent=Os01t0913400-02
Chr01	irgsp1_rep	CDS	39817126	39817611	.	-	0	Parent=Os01t0913400-02
Chr01	irgsp1_rep	three_prime_UTR	39816815	39817125	.	-	.	Parent=Os01t0913400-02
Chr01	irgsp1_rep	three_prime_UTR	39815762	39815868	.	-	.	Parent=Os01t0913400-02
Chr01	irgsp1_rep	three_prime_UTR	39815577	39815660	.	-	.	Parent=Os01t0913400-02
Chr01	irgsp1_rep	three_prime_UTR	39811724	39812345	.	-	.	Parent=Os01t0913400-02
Chr01	irgsp1_rep	mRNA	39822035	39823763	.	-	.	ID=Os01t0913600-01;Name=Os01t0913600-01;Locus_id=Os01g0913600;Note=Similar to Rho GDP-dissociation inhibitor 1 (Rho GDI-1) (AtRhoGDI1).;Transcript_evidence=AK071735 (DDBJ%2C Best hit);ORF_evidence=B6TH58 (UniProt);GO=Cellular Component: cytoplasm (GO:0005737),Molecular Function: Rho GDP-dissociation inhibitor activity (GO:0005094);InterPro=RHO protein GDP dissociation inhibitor (IPR000406),Immunoglobulin E-set (IPR014756);NIAS_FLcDNA=J023112G04;Expression=AK071735;TENOR=Os01t0913600-01;KEGG=Os01t0913600-01
Chr01	irgsp1_rep	five_prime_UTR	39823674	39823763	.	-	.	Parent=Os01t0913600-01
Chr01	irgsp1_rep	CDS	39823512	39823673	.	-	0	Parent=Os01t0913600-01
Chr01	irgsp1_rep	CDS	39823355	39823421	.	-	0	Parent=Os01t0913600-01
Chr01	irgsp1_rep	CDS	39823019	39823237	.	-	2	Parent=Os01t0913600-01
Chr01	irgsp1_rep	CDS	39822544	39822668	.	-	2	Parent=Os01t0913600-01
Chr01	irgsp1_rep	CDS	39822375	39822455	.	-	0	Parent=Os01t0913600-01
Chr01	irgsp1_rep	three_prime_UTR	39822035	39822374	.	-	.	Parent=Os01t0913600-01
Chr01	irgsp1_rep	mRNA	39824933	39826647	.	+	.	ID=Os01t0913800-01;Name=Os01t0913800-01;Locus_id=Os01g0913800;Note=Hypothetical conserved gene.;Transcript_evidence=AK065343 (DDBJ%2C Best hit);ORF_evidence=NP_001045173.1 (RefSeq);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J013007P01;Expression=AK065343;TENOR=Os01t0913800-01;KEGG=Os01t0913800-01
Chr01	irgsp1_rep	five_prime_UTR	39824933	39824933	.	+	.	Parent=Os01t0913800-01
Chr01	irgsp1_rep	CDS	39824934	39825411	.	+	0	Parent=Os01t0913800-01
Chr01	irgsp1_rep	CDS	39825452	39826437	.	+	2	Parent=Os01t0913800-01
Chr01	irgsp1_rep	three_prime_UTR	39826438	39826647	.	+	.	Parent=Os01t0913800-01
Chr01	irgsp1_rep	mRNA	39826795	39828456	.	-	.	ID=Os01t0913900-01;Name=Os01t0913900-01;Locus_id=Os01g0913900;CGSNL Gene Symbol=MADS98;CGSNL Gene Name=MADS BOX GENE 98;Oryzabase Gene Symbol Synonym(s)=OsMADS98;Oryzabase Gene Name Synonym(s)=MADS box gene98%2C MADS box gene 98%2C MADS-box transcription factor 98;Note=Conserved hypothetical protein.;Transcript_evidence=AK110828 (DDBJ%2C Best hit);ORF_evidence=A2WY91 (UniProt);NIAS_FLcDNA=002-171-H11;Oryzabase=12334;TENOR=Os01t0913900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	39827293	39828456	.	-	0	Parent=Os01t0913900-01
Chr01	irgsp1_rep	three_prime_UTR	39826795	39827292	.	-	.	Parent=Os01t0913900-01
Chr01	irgsp1_rep	mRNA	39829709	39831455	.	-	.	ID=Os01t0914000-01;Name=Os01t0914000-01;Locus_id=Os01g0914000;Note=Conserved hypothetical protein.;Transcript_evidence=AK101364 (DDBJ%2C Best hit);ORF_evidence=A3A0V2 (UniProt);NIAS_FLcDNA=J033035K05;Expression=AK101364;TENOR=Os01t0914000-01;KEGG=Os01t0914000-01
Chr01	irgsp1_rep	five_prime_UTR	39831237	39831455	.	-	.	Parent=Os01t0914000-01
Chr01	irgsp1_rep	CDS	39831231	39831236	.	-	0	Parent=Os01t0914000-01
Chr01	irgsp1_rep	CDS	39830629	39830808	.	-	0	Parent=Os01t0914000-01
Chr01	irgsp1_rep	CDS	39830309	39830488	.	-	0	Parent=Os01t0914000-01
Chr01	irgsp1_rep	CDS	39829901	39829957	.	-	0	Parent=Os01t0914000-01
Chr01	irgsp1_rep	three_prime_UTR	39829709	39829900	.	-	.	Parent=Os01t0914000-01
Chr01	irgsp1_rep	mRNA	39836717	39837052	.	+	.	ID=Os01t0914100-00;Name=Os01t0914100-00;Locus_id=Os01g0914100;Oryzabase Gene Symbol Synonym(s)=OsLTPd1%2C OsLtpIV.1;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein d1%2C lipid transfer protein d1%2C type D non-specific lipid transfer protein 1;Note=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001045177.1 (RefSeq);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);Oryzabase=13542;TENOR=Os01t0914100-00;KEGG=Os01t0914100-00
Chr01	irgsp1_rep	CDS	39836717	39837052	.	+	0	Parent=Os01t0914100-00
Chr01	irgsp1_rep	mRNA	39839262	39846761	.	-	.	ID=Os01t0914200-01;Name=Os01t0914200-01;Locus_id=Os01g0914200;Note=Hypothetical protein.;Transcript_evidence=AK106995 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-120-B09;TENOR=Os01t0914200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	39846664	39846761	.	-	.	Parent=Os01t0914200-01
Chr01	irgsp1_rep	five_prime_UTR	39845936	39846058	.	-	.	Parent=Os01t0914200-01
Chr01	irgsp1_rep	five_prime_UTR	39845159	39845617	.	-	.	Parent=Os01t0914200-01
Chr01	irgsp1_rep	five_prime_UTR	39844270	39844993	.	-	.	Parent=Os01t0914200-01
Chr01	irgsp1_rep	five_prime_UTR	39844110	39844151	.	-	.	Parent=Os01t0914200-01
Chr01	irgsp1_rep	CDS	39844063	39844109	.	-	0	Parent=Os01t0914200-01
Chr01	irgsp1_rep	CDS	39839665	39840019	.	-	1	Parent=Os01t0914200-01
Chr01	irgsp1_rep	three_prime_UTR	39839262	39839664	.	-	.	Parent=Os01t0914200-01
Chr01	irgsp1_rep	mRNA	39839621	39840442	.	+	.	ID=Os01t0914300-01;Name=Os01t0914300-01;Locus_id=Os01g0914300;Oryzabase Gene Symbol Synonym(s)=OsLTPd2%2C OsLtpIV.2;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein d2%2C lipid transfer protein d2%2C type D non-specific lipid transfer protein 2;Note=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor domain containing protein.;Transcript_evidence=AK105463 (DDBJ%2C Best hit),AK103489 (DDBJ%2C Best hit);ORF_evidence=B8A848 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=001-126-A01,J033130M24;Oryzabase=13543;TENOR=Os01t0914300-01
Chr01	irgsp1_rep	five_prime_UTR	39839621	39839717	.	+	.	Parent=Os01t0914300-01
Chr01	irgsp1_rep	CDS	39839718	39840029	.	+	0	Parent=Os01t0914300-01
Chr01	irgsp1_rep	three_prime_UTR	39840030	39840442	.	+	.	Parent=Os01t0914300-01
Chr01	irgsp1_rep	mRNA	39845391	39846627	.	+	.	ID=Os01t0914400-01;Name=Os01t0914400-01;Locus_id=Os01g0914400;RAP-DB Gene Symbol Synonym(s)=OsEPFL9%2C STOMAGEN;RAP-DB Gene Name Synonym(s)=EPIDERMAL PATTERNING FACTOR-Like 9;Oryzabase Gene Symbol Synonym(s)=STOMAGEN%2C OsEPFL9%2C EPFL9;Oryzabase Gene Name Synonym(s)=Epidermal Patterning Factor like-9;Note=Orthologue of Arabidopsis EPFL9%2C Regulation of leaf stomatal density;Transcript_evidence=AK063138;ORF_evidence=Q5N810;GO=Biological Process: positive regulation of stomatal complex development (GO:2000123);InterPro=Stomagen%2C C-terminal domain superfamily (IPR038572),Stomagen (IPR031753);NIAS_FLcDNA=001-111-G05;Manual Curation=May 24%2C 2019;Literature_PMID=30944383,28349358;Oryzabase=20404;Expression=AK063138;TENOR=Os01t0914400-01;KEGG=Os01t0914400-01
Chr01	irgsp1_rep	five_prime_UTR	39845391	39845456	.	+	.	Parent=Os01t0914400-01
Chr01	irgsp1_rep	CDS	39845457	39845571	.	+	0	Parent=Os01t0914400-01
Chr01	irgsp1_rep	CDS	39845696	39845769	.	+	2	Parent=Os01t0914400-01
Chr01	irgsp1_rep	CDS	39846184	39846366	.	+	0	Parent=Os01t0914400-01
Chr01	irgsp1_rep	three_prime_UTR	39846367	39846627	.	+	.	Parent=Os01t0914400-01
Chr01	irgsp1_rep	mRNA	39849645	39851426	.	-	.	ID=Os01t0914600-01;Name=Os01t0914600-01;Locus_id=Os01g0914600;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK106012 (DDBJ%2C Best hit);ORF_evidence=B8A850 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-206-B03;Expression=AK106012;TENOR=Os01t0914600-01;KEGG=Os01t0914600-01
Chr01	irgsp1_rep	five_prime_UTR	39851417	39851426	.	-	.	Parent=Os01t0914600-01
Chr01	irgsp1_rep	CDS	39849647	39851416	.	-	0	Parent=Os01t0914600-01
Chr01	irgsp1_rep	three_prime_UTR	39849645	39849646	.	-	.	Parent=Os01t0914600-01
Chr01	irgsp1_rep	mRNA	39852601	39856048	.	+	.	ID=Os01t0914700-01;Name=Os01t0914700-01;Locus_id=Os01g0914700;Note=Peptidase A22B%2C signal peptide peptidase domain containing protein.;Transcript_evidence=AK069261 (DDBJ%2C Best hit);ORF_evidence=B8A851 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Protease-associated domain%2C PA (IPR003137),Peptidase A22%2C presenilin signal peptide (IPR006639),Peptidase A22B%2C signal peptide peptidase (IPR007369);NIAS_FLcDNA=J023010L21;Expression=AK069261;TENOR=Os01t0914700-01;KEGG=Os01t0914700-01
Chr01	irgsp1_rep	five_prime_UTR	39852601	39852738	.	+	.	Parent=Os01t0914700-01
Chr01	irgsp1_rep	CDS	39852739	39852915	.	+	0	Parent=Os01t0914700-01
Chr01	irgsp1_rep	CDS	39853001	39853271	.	+	0	Parent=Os01t0914700-01
Chr01	irgsp1_rep	CDS	39853513	39853632	.	+	2	Parent=Os01t0914700-01
Chr01	irgsp1_rep	CDS	39853733	39853857	.	+	2	Parent=Os01t0914700-01
Chr01	irgsp1_rep	CDS	39854053	39854235	.	+	0	Parent=Os01t0914700-01
Chr01	irgsp1_rep	CDS	39854351	39854385	.	+	0	Parent=Os01t0914700-01
Chr01	irgsp1_rep	CDS	39854497	39854653	.	+	1	Parent=Os01t0914700-01
Chr01	irgsp1_rep	CDS	39854737	39854790	.	+	0	Parent=Os01t0914700-01
Chr01	irgsp1_rep	CDS	39854884	39854976	.	+	0	Parent=Os01t0914700-01
Chr01	irgsp1_rep	CDS	39855057	39855196	.	+	0	Parent=Os01t0914700-01
Chr01	irgsp1_rep	CDS	39855347	39855417	.	+	1	Parent=Os01t0914700-01
Chr01	irgsp1_rep	CDS	39855500	39855580	.	+	2	Parent=Os01t0914700-01
Chr01	irgsp1_rep	CDS	39855662	39855726	.	+	2	Parent=Os01t0914700-01
Chr01	irgsp1_rep	three_prime_UTR	39855727	39856048	.	+	.	Parent=Os01t0914700-01
Chr01	irgsp1_rep	mRNA	39857842	39861282	.	+	.	ID=Os01t0914800-01;Name=Os01t0914800-01;Locus_id=Os01g0914800;Oryzabase Gene Symbol Synonym(s)=OsTBL39%2C TBL39;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 39;Note=Protein of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=AK102791 (DDBJ%2C Best hit);ORF_evidence=XP_002865870.1 (RefSeq);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=J033107P14;Oryzabase=21494;Expression=AK102791;TENOR=Os01t0914800-01;KEGG=Os01t0914800-01
Chr01	irgsp1_rep	five_prime_UTR	39857842	39857987	.	+	.	Parent=Os01t0914800-01
Chr01	irgsp1_rep	five_prime_UTR	39858216	39858262	.	+	.	Parent=Os01t0914800-01
Chr01	irgsp1_rep	CDS	39858263	39858695	.	+	0	Parent=Os01t0914800-01
Chr01	irgsp1_rep	CDS	39858851	39859128	.	+	2	Parent=Os01t0914800-01
Chr01	irgsp1_rep	CDS	39860087	39860884	.	+	0	Parent=Os01t0914800-01
Chr01	irgsp1_rep	three_prime_UTR	39860885	39861282	.	+	.	Parent=Os01t0914800-01
Chr01	irgsp1_rep	mRNA	39866435	39867460	.	-	.	ID=Os01t0915000-01;Name=Os01t0915000-01;Locus_id=Os01g0915000;Note=Protein of unknown function DUF506%2C plant family protein.;Transcript_evidence=AK107951 (DDBJ%2C Best hit);ORF_evidence=A2WYA2 (UniProt);InterPro=Protein of unknown function DUF506%2C plant (IPR006502);NIAS_FLcDNA=002-135-B11;Expression=AK107951;TENOR=Os01t0915000-01;KEGG=Os01t0915000-01
Chr01	irgsp1_rep	five_prime_UTR	39867413	39867460	.	-	.	Parent=Os01t0915000-01
Chr01	irgsp1_rep	CDS	39866531	39867412	.	-	0	Parent=Os01t0915000-01
Chr01	irgsp1_rep	three_prime_UTR	39866435	39866530	.	-	.	Parent=Os01t0915000-01
Chr01	irgsp1_rep	mRNA	39876458	39877243	.	+	.	ID=Os01t0915200-01;Name=Os01t0915200-01;Locus_id=Os01g0915200;Oryzabase Gene Name Synonym(s)=cystatin;Note=Similar to cysteine proteinase inhibitor B.;Transcript_evidence=AK121863 (DDBJ%2C Best hit);ORF_evidence=NP_001146946.1 (RefSeq);GO=Molecular Function: cysteine-type endopeptidase inhibitor activity (GO:0004869);InterPro=Proteinase inhibitor I25%2C cystatin (IPR000010),Proteinase inhibitor I25%2C cystatin%2C conserved region (IPR020381);NIAS_FLcDNA=J033103C19;Oryzabase=18126;TENOR=Os01t0915200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	39876458	39876543	.	+	.	Parent=Os01t0915200-01
Chr01	irgsp1_rep	CDS	39876544	39877020	.	+	0	Parent=Os01t0915200-01
Chr01	irgsp1_rep	three_prime_UTR	39877021	39877243	.	+	.	Parent=Os01t0915200-01
Chr01	irgsp1_rep	mRNA	39878610	39881467	.	-	.	ID=Os01t0915300-01;Name=Os01t0915300-01;Locus_id=Os01g0915300;Note=Non-protein coding transcript.;Transcript_evidence=AK119435 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-133-A12;TENOR=Os01t0915300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	exon	39878610	39881467	.	-	.	Parent=Os01t0915300-01
Chr01	irgsp1_rep	mRNA	39881691	39890325	.	+	.	ID=Os01t0915350-00;Name=Os01t0915350-00;Locus_id=Os01g0915350;Note=Hypothetical protein.;Transcript_evidence=tplb0021a04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0915350-00
Chr01	irgsp1_rep	CDS	39881691	39881816	.	+	0	Parent=Os01t0915350-00
Chr01	irgsp1_rep	CDS	39881890	39882033	.	+	0	Parent=Os01t0915350-00
Chr01	irgsp1_rep	CDS	39882122	39882136	.	+	0	Parent=Os01t0915350-00
Chr01	irgsp1_rep	three_prime_UTR	39882137	39882251	.	+	.	Parent=Os01t0915350-00
Chr01	irgsp1_rep	three_prime_UTR	39882319	39882381	.	+	.	Parent=Os01t0915350-00
Chr01	irgsp1_rep	three_prime_UTR	39882516	39882662	.	+	.	Parent=Os01t0915350-00
Chr01	irgsp1_rep	three_prime_UTR	39883112	39883176	.	+	.	Parent=Os01t0915350-00
Chr01	irgsp1_rep	three_prime_UTR	39883264	39883367	.	+	.	Parent=Os01t0915350-00
Chr01	irgsp1_rep	three_prime_UTR	39884167	39884339	.	+	.	Parent=Os01t0915350-00
Chr01	irgsp1_rep	three_prime_UTR	39884403	39884500	.	+	.	Parent=Os01t0915350-00
Chr01	irgsp1_rep	three_prime_UTR	39884578	39884677	.	+	.	Parent=Os01t0915350-00
Chr01	irgsp1_rep	three_prime_UTR	39884786	39884936	.	+	.	Parent=Os01t0915350-00
Chr01	irgsp1_rep	three_prime_UTR	39886715	39886787	.	+	.	Parent=Os01t0915350-00
Chr01	irgsp1_rep	three_prime_UTR	39886887	39887095	.	+	.	Parent=Os01t0915350-00
Chr01	irgsp1_rep	three_prime_UTR	39887241	39887336	.	+	.	Parent=Os01t0915350-00
Chr01	irgsp1_rep	three_prime_UTR	39887404	39887527	.	+	.	Parent=Os01t0915350-00
Chr01	irgsp1_rep	three_prime_UTR	39887705	39887896	.	+	.	Parent=Os01t0915350-00
Chr01	irgsp1_rep	three_prime_UTR	39888520	39888611	.	+	.	Parent=Os01t0915350-00
Chr01	irgsp1_rep	three_prime_UTR	39888861	39888961	.	+	.	Parent=Os01t0915350-00
Chr01	irgsp1_rep	three_prime_UTR	39889544	39889798	.	+	.	Parent=Os01t0915350-00
Chr01	irgsp1_rep	three_prime_UTR	39890010	39890097	.	+	.	Parent=Os01t0915350-00
Chr01	irgsp1_rep	three_prime_UTR	39890176	39890325	.	+	.	Parent=Os01t0915350-00
Chr01	irgsp1_rep	mRNA	39883004	39884662	.	-	.	ID=Os01t0915400-00;Name=Os01t0915400-00;Locus_id=Os01g0915400;CGSNL Gene Symbol=SEC1;CGSNL Gene Name=SECRET AGENT 1;Oryzabase Gene Symbol Synonym(s)=OsSEC1;Note=Similar to SEC (SECRET AGENT)%3B transferase%2C transferring glycosyl groups.;Transcript_evidence=CT834784 (DDBJ%2C Best hit);ORF_evidence=NP_187074.1 (RefSeq);Oryzabase=22972;TENOR=Os01t0915400-00;KEGG=Os01t0915400-00 (EC:2.4.1.-)
Chr01	irgsp1_rep	five_prime_UTR	39884662	39884662	.	-	.	Parent=Os01t0915400-00
Chr01	irgsp1_rep	CDS	39884567	39884661	.	-	0	Parent=Os01t0915400-00
Chr01	irgsp1_rep	CDS	39884406	39884490	.	-	1	Parent=Os01t0915400-00
Chr01	irgsp1_rep	CDS	39884174	39884341	.	-	0	Parent=Os01t0915400-00
Chr01	irgsp1_rep	CDS	39883252	39883374	.	-	0	Parent=Os01t0915400-00
Chr01	irgsp1_rep	three_prime_UTR	39883004	39883251	.	-	.	Parent=Os01t0915400-00
Chr01	irgsp1_rep	mRNA	39878959	39879405	.	+	.	ID=Os01t0915401-00;Name=Os01t0915401-00;Locus_id=Os01g0915401;Note=Proteinase inhibitor I25%2C cystatin domain containing protein.;Transcript_evidence=Q0JGM8 (UniProt);ORF_evidence=Q0JGM8 (UniProt);GO=Molecular Function: cysteine-type endopeptidase inhibitor activity (GO:0004869);InterPro=Proteinase inhibitor I25%2C cystatin (IPR000010),Proteinase inhibitor I25%2C cystatin%2C conserved region (IPR020381);TENOR=Os01t0915401-00
Chr01	irgsp1_rep	CDS	39878959	39879405	.	+	0	Parent=Os01t0915401-00
Chr01	irgsp1_rep	mRNA	39894690	39897520	.	-	.	ID=Os01t0915600-01;Name=Os01t0915600-01;Locus_id=Os01g0915600;Oryzabase Gene Symbol Synonym(s)=OsbHLH090;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 090;Note=Similar to TA1 protein (Fragment).;Transcript_evidence=AK101063 (DDBJ%2C Best hit);ORF_evidence=Q70KS8 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J033022O19;Oryzabase=15377;Expression=AK101063;TENOR=Os01t0915600-01;KEGG=Os01t0915600-01
Chr01	irgsp1_rep	five_prime_UTR	39897192	39897520	.	-	.	Parent=Os01t0915600-01
Chr01	irgsp1_rep	CDS	39896535	39897191	.	-	0	Parent=Os01t0915600-01
Chr01	irgsp1_rep	CDS	39896233	39896454	.	-	0	Parent=Os01t0915600-01
Chr01	irgsp1_rep	CDS	39896060	39896125	.	-	0	Parent=Os01t0915600-01
Chr01	irgsp1_rep	CDS	39895885	39895953	.	-	0	Parent=Os01t0915600-01
Chr01	irgsp1_rep	CDS	39895685	39895759	.	-	0	Parent=Os01t0915600-01
Chr01	irgsp1_rep	CDS	39895353	39895577	.	-	0	Parent=Os01t0915600-01
Chr01	irgsp1_rep	CDS	39895178	39895271	.	-	0	Parent=Os01t0915600-01
Chr01	irgsp1_rep	CDS	39895054	39895091	.	-	2	Parent=Os01t0915600-01
Chr01	irgsp1_rep	three_prime_UTR	39894690	39895053	.	-	.	Parent=Os01t0915600-01
Chr01	irgsp1_rep	mRNA	39895673	39896850	.	+	.	ID=Os01t0915666-00;Name=Os01t0915666-00;Locus_id=Os01g0915666;Note=Hypothetical protein.;Transcript_evidence=tplb0045a15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0915666-00
Chr01	irgsp1_rep	five_prime_UTR	39895673	39895748	.	+	.	Parent=Os01t0915666-00
Chr01	irgsp1_rep	CDS	39895749	39895785	.	+	0	Parent=Os01t0915666-00
Chr01	irgsp1_rep	CDS	39896009	39896122	.	+	2	Parent=Os01t0915666-00
Chr01	irgsp1_rep	CDS	39896230	39896422	.	+	2	Parent=Os01t0915666-00
Chr01	irgsp1_rep	CDS	39896493	39896763	.	+	1	Parent=Os01t0915666-00
Chr01	irgsp1_rep	three_prime_UTR	39896764	39896850	.	+	.	Parent=Os01t0915666-00
Chr01	irgsp1_rep	mRNA	39912991	39913210	.	-	.	ID=Os01t0915732-00;Name=Os01t0915732-00;Locus_id=Os01g0915732;Note=Hypothetical protein.;Transcript_evidence=EU973377 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0915732-00
Chr01	irgsp1_rep	five_prime_UTR	39913210	39913210	.	-	.	Parent=Os01t0915732-00
Chr01	irgsp1_rep	CDS	39912991	39913209	.	-	0	Parent=Os01t0915732-00
Chr01	irgsp1_rep	mRNA	39914190	39916470	.	-	.	ID=Os01t0915800-01;Name=Os01t0915800-01;Locus_id=Os01g0915800;Oryzabase Gene Symbol Synonym(s)=OsFKBP15-2;Oryzabase Gene Name Synonym(s)=FK506 binding protein 15-2;Note=Similar to FK506-binding protein 2-2 precursor (EC 5.2.1.8) (Peptidyl-prolyl cis- trans isomerase) (PPIase) (Rotamase) (15 kDa FKBP) (FKBP-15-2).;Transcript_evidence=AK103859 (DDBJ%2C Best hit);ORF_evidence=NP_001152120.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457);InterPro=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type%2C domain (IPR001179),Peptidyl-prolyl cis-trans isomerase%2C FKBP-type (IPR023566);NIAS_FLcDNA=J033148P20;Oryzabase=10027;Expression=AK103859;TENOR=Os01t0915800-01;KEGG=Os01t0915800-01 (EC:5.2.1.8)
Chr01	irgsp1_rep	five_prime_UTR	39916458	39916470	.	-	.	Parent=Os01t0915800-01
Chr01	irgsp1_rep	CDS	39916373	39916457	.	-	0	Parent=Os01t0915800-01
Chr01	irgsp1_rep	CDS	39916189	39916238	.	-	2	Parent=Os01t0915800-01
Chr01	irgsp1_rep	CDS	39915528	39915590	.	-	0	Parent=Os01t0915800-01
Chr01	irgsp1_rep	CDS	39914953	39915043	.	-	0	Parent=Os01t0915800-01
Chr01	irgsp1_rep	CDS	39914682	39914786	.	-	2	Parent=Os01t0915800-01
Chr01	irgsp1_rep	CDS	39914412	39914494	.	-	2	Parent=Os01t0915800-01
Chr01	irgsp1_rep	three_prime_UTR	39914190	39914411	.	-	.	Parent=Os01t0915800-01
Chr01	irgsp1_rep	mRNA	39918940	39920664	.	-	.	ID=Os01t0915900-01;Name=Os01t0915900-01;Locus_id=Os01g0915900;Note=Conserved hypothetical protein.;Transcript_evidence=AK243101 (DDBJ%2C Best hit);ORF_evidence=NP_001172710.1 (RefSeq);NIAS_FLcDNA=J100024O13;TENOR=Os01t0915900-01;KEGG=Os01t0915900-01
Chr01	irgsp1_rep	five_prime_UTR	39920607	39920664	.	-	.	Parent=Os01t0915900-01
Chr01	irgsp1_rep	five_prime_UTR	39920301	39920372	.	-	.	Parent=Os01t0915900-01
Chr01	irgsp1_rep	CDS	39919455	39920300	.	-	0	Parent=Os01t0915900-01
Chr01	irgsp1_rep	three_prime_UTR	39918940	39919454	.	-	.	Parent=Os01t0915900-01
Chr01	irgsp1_rep	mRNA	39922260	39923794	.	-	.	ID=Os01t0916000-01;Name=Os01t0916000-01;Locus_id=Os01g0916000;Note=Conserved hypothetical protein.;Transcript_evidence=AK106300 (DDBJ%2C Best hit);ORF_evidence=A2WYA9 (UniProt);NIAS_FLcDNA=002-101-C04;Expression=AK106300;TENOR=Os01t0916000-01;KEGG=Os01t0916000-01
Chr01	irgsp1_rep	five_prime_UTR	39923747	39923794	.	-	.	Parent=Os01t0916000-01
Chr01	irgsp1_rep	five_prime_UTR	39923566	39923631	.	-	.	Parent=Os01t0916000-01
Chr01	irgsp1_rep	CDS	39922765	39923565	.	-	0	Parent=Os01t0916000-01
Chr01	irgsp1_rep	three_prime_UTR	39922260	39922764	.	-	.	Parent=Os01t0916000-01
Chr01	irgsp1_rep	mRNA	39926253	39927260	.	-	.	ID=Os01t0916100-01;Name=Os01t0916100-01;Locus_id=Os01g0916100;Note=Similar to loricrin.;Transcript_evidence=AK109173 (DDBJ%2C Best hit);ORF_evidence=NP_001147500.1 (RefSeq);NIAS_FLcDNA=002-155-H08;TENOR=Os01t0916100-01
Chr01	irgsp1_rep	five_prime_UTR	39927221	39927260	.	-	.	Parent=Os01t0916100-01
Chr01	irgsp1_rep	five_prime_UTR	39926767	39926768	.	-	.	Parent=Os01t0916100-01
Chr01	irgsp1_rep	CDS	39926253	39926766	.	-	0	Parent=Os01t0916100-01
Chr01	irgsp1_rep	mRNA	39932611	39938156	.	-	.	ID=Os01t0916200-01;Name=Os01t0916200-01;Locus_id=Os01g0916200;Note=Similar to predicted protein.;Transcript_evidence=AK073904 (DDBJ%2C Best hit),AK073832 (DDBJ%2C Best hit);ORF_evidence=A2WYB1 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: membrane coat (GO:0030117),Molecular Function: binding (GO:0005488);InterPro=Clathrin/coatomer adaptor%2C adaptin-like%2C N-terminal (IPR002553),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033072A21,J033067M21;TENOR=Os01t0916200-01
Chr01	irgsp1_rep	five_prime_UTR	39937934	39938156	.	-	.	Parent=Os01t0916200-01
Chr01	irgsp1_rep	CDS	39937331	39937933	.	-	0	Parent=Os01t0916200-01
Chr01	irgsp1_rep	CDS	39936620	39936805	.	-	0	Parent=Os01t0916200-01
Chr01	irgsp1_rep	CDS	39936311	39936526	.	-	0	Parent=Os01t0916200-01
Chr01	irgsp1_rep	CDS	39936105	39936215	.	-	0	Parent=Os01t0916200-01
Chr01	irgsp1_rep	CDS	39935466	39935663	.	-	0	Parent=Os01t0916200-01
Chr01	irgsp1_rep	CDS	39935233	39935364	.	-	0	Parent=Os01t0916200-01
Chr01	irgsp1_rep	CDS	39934666	39934722	.	-	0	Parent=Os01t0916200-01
Chr01	irgsp1_rep	CDS	39934463	39934579	.	-	0	Parent=Os01t0916200-01
Chr01	irgsp1_rep	CDS	39933941	39934018	.	-	0	Parent=Os01t0916200-01
Chr01	irgsp1_rep	CDS	39933006	39933149	.	-	0	Parent=Os01t0916200-01
Chr01	irgsp1_rep	CDS	39932611	39932770	.	-	0	Parent=Os01t0916200-01
Chr01	irgsp1_rep	mRNA	39931275	39937611	.	-	.	ID=Os01t0916200-02;Name=Os01t0916200-02;Locus_id=Os01g0916200;Note=Clathrin/coatomer adaptor%2C adaptin-like%2C N-terminal domain containing protein.;Transcript_evidence=AK101112 (DDBJ%2C Best hit);ORF_evidence=A3A0W6 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: membrane coat (GO:0030117),Molecular Function: binding (GO:0005488);InterPro=Clathrin/coatomer adaptor%2C adaptin-like%2C N-terminal (IPR002553),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033025F13;TENOR=Os01t0916200-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	39937610	39937611	.	-	.	Parent=Os01t0916200-02
Chr01	irgsp1_rep	CDS	39937331	39937609	.	-	0	Parent=Os01t0916200-02
Chr01	irgsp1_rep	CDS	39936620	39936805	.	-	0	Parent=Os01t0916200-02
Chr01	irgsp1_rep	CDS	39936311	39936526	.	-	0	Parent=Os01t0916200-02
Chr01	irgsp1_rep	CDS	39936105	39936215	.	-	0	Parent=Os01t0916200-02
Chr01	irgsp1_rep	CDS	39935466	39935663	.	-	0	Parent=Os01t0916200-02
Chr01	irgsp1_rep	CDS	39935233	39935364	.	-	0	Parent=Os01t0916200-02
Chr01	irgsp1_rep	CDS	39934666	39934722	.	-	0	Parent=Os01t0916200-02
Chr01	irgsp1_rep	CDS	39934463	39934579	.	-	0	Parent=Os01t0916200-02
Chr01	irgsp1_rep	CDS	39933941	39934018	.	-	0	Parent=Os01t0916200-02
Chr01	irgsp1_rep	CDS	39933006	39933149	.	-	0	Parent=Os01t0916200-02
Chr01	irgsp1_rep	CDS	39931760	39932770	.	-	0	Parent=Os01t0916200-02
Chr01	irgsp1_rep	three_prime_UTR	39931275	39931759	.	-	.	Parent=Os01t0916200-02
Chr01	irgsp1_rep	mRNA	39938822	39944886	.	-	.	ID=Os01t0916300-01;Name=Os01t0916300-01;Locus_id=Os01g0916300;Note=Similar to PQBP-1 protein (Nuclear protein containing a WW domain) (Npw38) (JM26 protein).;Transcript_evidence=AK063922 (DDBJ%2C Best hit);ORF_evidence=NP_001147059.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WW/Rsp5/WWP (IPR001202);NIAS_FLcDNA=001-123-B11;Expression=AK063922;TENOR=Os01t0916300-01;KEGG=Os01t0916300-01
Chr01	irgsp1_rep	five_prime_UTR	39944582	39944886	.	-	.	Parent=Os01t0916300-01
Chr01	irgsp1_rep	five_prime_UTR	39944033	39944081	.	-	.	Parent=Os01t0916300-01
Chr01	irgsp1_rep	CDS	39943938	39944032	.	-	0	Parent=Os01t0916300-01
Chr01	irgsp1_rep	CDS	39943727	39943859	.	-	1	Parent=Os01t0916300-01
Chr01	irgsp1_rep	CDS	39943609	39943643	.	-	0	Parent=Os01t0916300-01
Chr01	irgsp1_rep	CDS	39943446	39943524	.	-	1	Parent=Os01t0916300-01
Chr01	irgsp1_rep	CDS	39943265	39943343	.	-	0	Parent=Os01t0916300-01
Chr01	irgsp1_rep	CDS	39942479	39942559	.	-	2	Parent=Os01t0916300-01
Chr01	irgsp1_rep	CDS	39942268	39942398	.	-	2	Parent=Os01t0916300-01
Chr01	irgsp1_rep	CDS	39941849	39941902	.	-	0	Parent=Os01t0916300-01
Chr01	irgsp1_rep	CDS	39941340	39941505	.	-	0	Parent=Os01t0916300-01
Chr01	irgsp1_rep	CDS	39940780	39940999	.	-	2	Parent=Os01t0916300-01
Chr01	irgsp1_rep	CDS	39940386	39940484	.	-	1	Parent=Os01t0916300-01
Chr01	irgsp1_rep	CDS	39940111	39940236	.	-	1	Parent=Os01t0916300-01
Chr01	irgsp1_rep	CDS	39939891	39939942	.	-	1	Parent=Os01t0916300-01
Chr01	irgsp1_rep	CDS	39939228	39939374	.	-	0	Parent=Os01t0916300-01
Chr01	irgsp1_rep	three_prime_UTR	39938822	39939227	.	-	.	Parent=Os01t0916300-01
Chr01	irgsp1_rep	mRNA	39942277	39944868	.	-	.	ID=Os01t0916300-02;Name=Os01t0916300-02;Locus_id=Os01g0916300;Note=Similar to protein binding protein.;Transcript_evidence=AK121997 (DDBJ%2C Best hit);ORF_evidence=NP_001147059.1 (RefSeq);NIAS_FLcDNA=J033110E03;Expression=AK121997;TENOR=Os01t0916300-02;KEGG=Os01t0916300-02
Chr01	irgsp1_rep	five_prime_UTR	39944582	39944868	.	-	.	Parent=Os01t0916300-02
Chr01	irgsp1_rep	five_prime_UTR	39944033	39944081	.	-	.	Parent=Os01t0916300-02
Chr01	irgsp1_rep	CDS	39943727	39944032	.	-	0	Parent=Os01t0916300-02
Chr01	irgsp1_rep	CDS	39943609	39943643	.	-	0	Parent=Os01t0916300-02
Chr01	irgsp1_rep	CDS	39943446	39943524	.	-	1	Parent=Os01t0916300-02
Chr01	irgsp1_rep	CDS	39943265	39943343	.	-	0	Parent=Os01t0916300-02
Chr01	irgsp1_rep	CDS	39942479	39942559	.	-	2	Parent=Os01t0916300-02
Chr01	irgsp1_rep	CDS	39942277	39942398	.	-	2	Parent=Os01t0916300-02
Chr01	irgsp1_rep	mRNA	39938823	39944838	.	-	.	ID=Os01t0916300-03;Name=Os01t0916300-03;Locus_id=Os01g0916300;Note=Similar to protein binding protein.;Transcript_evidence=AK121061 (DDBJ%2C Best hit),AK103107 (DDBJ%2C Best hit);ORF_evidence=NP_001147059.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WW/Rsp5/WWP (IPR001202);NIAS_FLcDNA=J023058E11,J033118P14;TENOR=Os01t0916300-03
Chr01	irgsp1_rep	five_prime_UTR	39944582	39944838	.	-	.	Parent=Os01t0916300-03
Chr01	irgsp1_rep	five_prime_UTR	39944033	39944081	.	-	.	Parent=Os01t0916300-03
Chr01	irgsp1_rep	CDS	39943727	39944032	.	-	0	Parent=Os01t0916300-03
Chr01	irgsp1_rep	CDS	39943609	39943643	.	-	0	Parent=Os01t0916300-03
Chr01	irgsp1_rep	CDS	39943446	39943524	.	-	1	Parent=Os01t0916300-03
Chr01	irgsp1_rep	CDS	39943265	39943343	.	-	0	Parent=Os01t0916300-03
Chr01	irgsp1_rep	CDS	39942479	39942559	.	-	2	Parent=Os01t0916300-03
Chr01	irgsp1_rep	CDS	39942268	39942398	.	-	2	Parent=Os01t0916300-03
Chr01	irgsp1_rep	CDS	39941849	39941902	.	-	0	Parent=Os01t0916300-03
Chr01	irgsp1_rep	CDS	39941340	39941505	.	-	0	Parent=Os01t0916300-03
Chr01	irgsp1_rep	CDS	39940780	39940999	.	-	2	Parent=Os01t0916300-03
Chr01	irgsp1_rep	CDS	39940386	39940484	.	-	1	Parent=Os01t0916300-03
Chr01	irgsp1_rep	CDS	39940111	39940236	.	-	1	Parent=Os01t0916300-03
Chr01	irgsp1_rep	CDS	39939891	39939942	.	-	1	Parent=Os01t0916300-03
Chr01	irgsp1_rep	CDS	39939228	39939374	.	-	0	Parent=Os01t0916300-03
Chr01	irgsp1_rep	three_prime_UTR	39938823	39939227	.	-	.	Parent=Os01t0916300-03
Chr01	irgsp1_rep	mRNA	39947871	39953554	.	-	.	ID=Os01t0916350-01;Name=Os01t0916350-01;Locus_id=Os01g0916350;Note=Hypothetical gene.;Transcript_evidence=AK288280 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090018B07;TENOR=Os01t0916350-01;KEGG=Os01t0916350-01
Chr01	irgsp1_rep	five_prime_UTR	39951442	39953554	.	-	.	Parent=Os01t0916350-01
Chr01	irgsp1_rep	CDS	39951103	39951441	.	-	0	Parent=Os01t0916350-01
Chr01	irgsp1_rep	three_prime_UTR	39947871	39951102	.	-	.	Parent=Os01t0916350-01
Chr01	irgsp1_rep	mRNA	39948114	39951519	.	+	.	ID=Os01t0916400-01;Name=Os01t0916400-01;Locus_id=Os01g0916400;CGSNL Gene Symbol=SBP;CGSNL Gene Name=SELENIUM-BINDING PROTEIN;Oryzabase Gene Symbol Synonym(s)=Os SBP%2C OsSBP;Oryzabase Gene Name Synonym(s)=selenium-binding protein%2C selenium-binding protein homologue;Note=Similar to Selenium binding protein.;Transcript_evidence=AK071710 (DDBJ%2C Best hit);ORF_evidence=B6TFC2 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: selenium binding (GO:0008430);InterPro=Selenium-binding protein (IPR008826),WD40/YVTN repeat-like-containing domain (IPR015943);NIAS_FLcDNA=J023110L07;Oryzabase=13665;Expression=AK071710;TENOR=Os01t0916400-01;KEGG=Os01t0916400-01
Chr01	irgsp1_rep	five_prime_UTR	39948114	39948222	.	+	.	Parent=Os01t0916400-01
Chr01	irgsp1_rep	CDS	39948223	39948349	.	+	0	Parent=Os01t0916400-01
Chr01	irgsp1_rep	CDS	39949043	39949238	.	+	2	Parent=Os01t0916400-01
Chr01	irgsp1_rep	CDS	39949342	39949569	.	+	1	Parent=Os01t0916400-01
Chr01	irgsp1_rep	CDS	39949898	39950129	.	+	1	Parent=Os01t0916400-01
Chr01	irgsp1_rep	CDS	39950217	39950324	.	+	0	Parent=Os01t0916400-01
Chr01	irgsp1_rep	CDS	39950437	39950709	.	+	0	Parent=Os01t0916400-01
Chr01	irgsp1_rep	CDS	39951002	39951286	.	+	0	Parent=Os01t0916400-01
Chr01	irgsp1_rep	three_prime_UTR	39951287	39951519	.	+	.	Parent=Os01t0916400-01
Chr01	irgsp1_rep	mRNA	39954580	39956409	.	+	.	ID=Os01t0916600-01;Name=Os01t0916600-01;Locus_id=Os01g0916600;CGSNL Gene Symbol=GRP1;CGSNL Gene Name=GLYCINE-RICH RNA-BINDING PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsGRP1;Oryzabase Gene Name Synonym(s)=glycine-rich RNA-binding protein 1;Note=RNA recognition motif%2C glycine rich protein domain containing protein.;Transcript_evidence=AK121668 (DDBJ%2C Best hit),AK059446 (DDBJ%2C Best hit);ORF_evidence=O24188 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033067G16,001-028-A07;Oryzabase=8937;Expression=AK121668;TENOR=Os01t0916600-01;KEGG=Os01t0916600-01
Chr01	irgsp1_rep	five_prime_UTR	39954580	39954659	.	+	.	Parent=Os01t0916600-01
Chr01	irgsp1_rep	five_prime_UTR	39955210	39955221	.	+	.	Parent=Os01t0916600-01
Chr01	irgsp1_rep	CDS	39955222	39955348	.	+	0	Parent=Os01t0916600-01
Chr01	irgsp1_rep	CDS	39955435	39955503	.	+	2	Parent=Os01t0916600-01
Chr01	irgsp1_rep	CDS	39955600	39955706	.	+	2	Parent=Os01t0916600-01
Chr01	irgsp1_rep	CDS	39955998	39956147	.	+	0	Parent=Os01t0916600-01
Chr01	irgsp1_rep	three_prime_UTR	39956148	39956409	.	+	.	Parent=Os01t0916600-01
Chr01	irgsp1_rep	mRNA	39958548	39959622	.	+	.	ID=Os01t0916700-01;Name=Os01t0916700-01;Locus_id=Os01g0916700;Note=Conserved hypothetical protein.;Transcript_evidence=AK288011 (DDBJ%2C Best hit);ORF_evidence=NP_001045196.1 (RefSeq);NIAS_FLcDNA=J075116J02;TENOR=Os01t0916700-01;KEGG=Os01t0916700-01
Chr01	irgsp1_rep	five_prime_UTR	39958548	39958591	.	+	.	Parent=Os01t0916700-01
Chr01	irgsp1_rep	CDS	39958592	39958809	.	+	0	Parent=Os01t0916700-01
Chr01	irgsp1_rep	CDS	39958898	39959061	.	+	1	Parent=Os01t0916700-01
Chr01	irgsp1_rep	CDS	39959262	39959302	.	+	2	Parent=Os01t0916700-01
Chr01	irgsp1_rep	three_prime_UTR	39959303	39959622	.	+	.	Parent=Os01t0916700-01
Chr01	irgsp1_rep	mRNA	39960770	39975917	.	-	.	ID=Os01t0916800-00;Name=Os01t0916800-00;Locus_id=Os01g0916800;Note=Similar to predicted protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001045197.2 (RefSeq);InterPro=THO complex%2C subunitTHOC2%2C C-terminal (IPR021418),THO complex%2C subunitTHOC2%2C N-terminal (IPR021726);TENOR=Os01t0916800-00;KEGG=Os01t0916800-00
Chr01	irgsp1_rep	CDS	39975768	39975917	.	-	0	Parent=Os01t0916800-00
Chr01	irgsp1_rep	CDS	39975518	39975643	.	-	0	Parent=Os01t0916800-00
Chr01	irgsp1_rep	CDS	39974495	39974536	.	-	0	Parent=Os01t0916800-00
Chr01	irgsp1_rep	CDS	39974305	39974364	.	-	0	Parent=Os01t0916800-00
Chr01	irgsp1_rep	CDS	39974140	39974202	.	-	0	Parent=Os01t0916800-00
Chr01	irgsp1_rep	CDS	39973853	39973933	.	-	0	Parent=Os01t0916800-00
Chr01	irgsp1_rep	CDS	39973313	39973387	.	-	0	Parent=Os01t0916800-00
Chr01	irgsp1_rep	CDS	39973007	39973075	.	-	0	Parent=Os01t0916800-00
Chr01	irgsp1_rep	CDS	39972727	39972860	.	-	0	Parent=Os01t0916800-00
Chr01	irgsp1_rep	CDS	39972048	39972123	.	-	1	Parent=Os01t0916800-00
Chr01	irgsp1_rep	CDS	39971139	39971329	.	-	0	Parent=Os01t0916800-00
Chr01	irgsp1_rep	CDS	39970918	39970998	.	-	1	Parent=Os01t0916800-00
Chr01	irgsp1_rep	CDS	39969914	39970094	.	-	1	Parent=Os01t0916800-00
Chr01	irgsp1_rep	CDS	39969752	39969832	.	-	0	Parent=Os01t0916800-00
Chr01	irgsp1_rep	CDS	39969540	39969659	.	-	0	Parent=Os01t0916800-00
Chr01	irgsp1_rep	CDS	39968274	39968333	.	-	0	Parent=Os01t0916800-00
Chr01	irgsp1_rep	CDS	39968021	39968148	.	-	0	Parent=Os01t0916800-00
Chr01	irgsp1_rep	CDS	39967777	39967873	.	-	1	Parent=Os01t0916800-00
Chr01	irgsp1_rep	CDS	39967563	39967694	.	-	0	Parent=Os01t0916800-00
Chr01	irgsp1_rep	CDS	39967383	39967486	.	-	0	Parent=Os01t0916800-00
Chr01	irgsp1_rep	CDS	39966804	39966981	.	-	1	Parent=Os01t0916800-00
Chr01	irgsp1_rep	CDS	39966543	39966694	.	-	0	Parent=Os01t0916800-00
Chr01	irgsp1_rep	CDS	39965502	39966108	.	-	1	Parent=Os01t0916800-00
Chr01	irgsp1_rep	CDS	39965306	39965410	.	-	0	Parent=Os01t0916800-00
Chr01	irgsp1_rep	CDS	39964417	39964572	.	-	0	Parent=Os01t0916800-00
Chr01	irgsp1_rep	CDS	39964086	39964161	.	-	0	Parent=Os01t0916800-00
Chr01	irgsp1_rep	CDS	39963739	39964004	.	-	2	Parent=Os01t0916800-00
Chr01	irgsp1_rep	CDS	39962527	39963579	.	-	0	Parent=Os01t0916800-00
Chr01	irgsp1_rep	CDS	39962030	39962319	.	-	0	Parent=Os01t0916800-00
Chr01	irgsp1_rep	CDS	39960770	39960839	.	-	1	Parent=Os01t0916800-00
Chr01	irgsp1_rep	mRNA	39966639	39976108	.	+	.	ID=Os01t0916950-00;Name=Os01t0916950-00;Locus_id=Os01g0916950;Note=Hypothetical gene.;Transcript_evidence=tplb0014o19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0916950-00
Chr01	irgsp1_rep	five_prime_UTR	39966639	39966692	.	+	.	Parent=Os01t0916950-00
Chr01	irgsp1_rep	five_prime_UTR	39966802	39966980	.	+	.	Parent=Os01t0916950-00
Chr01	irgsp1_rep	five_prime_UTR	39967382	39967469	.	+	.	Parent=Os01t0916950-00
Chr01	irgsp1_rep	five_prime_UTR	39967546	39967690	.	+	.	Parent=Os01t0916950-00
Chr01	irgsp1_rep	five_prime_UTR	39967772	39967875	.	+	.	Parent=Os01t0916950-00
Chr01	irgsp1_rep	five_prime_UTR	39968023	39968136	.	+	.	Parent=Os01t0916950-00
Chr01	irgsp1_rep	five_prime_UTR	39968256	39968331	.	+	.	Parent=Os01t0916950-00
Chr01	irgsp1_rep	five_prime_UTR	39969538	39969657	.	+	.	Parent=Os01t0916950-00
Chr01	irgsp1_rep	five_prime_UTR	39969750	39969842	.	+	.	Parent=Os01t0916950-00
Chr01	irgsp1_rep	five_prime_UTR	39969922	39970089	.	+	.	Parent=Os01t0916950-00
Chr01	irgsp1_rep	five_prime_UTR	39970550	39970763	.	+	.	Parent=Os01t0916950-00
Chr01	irgsp1_rep	five_prime_UTR	39970909	39970997	.	+	.	Parent=Os01t0916950-00
Chr01	irgsp1_rep	five_prime_UTR	39971138	39971328	.	+	.	Parent=Os01t0916950-00
Chr01	irgsp1_rep	five_prime_UTR	39972047	39972109	.	+	.	Parent=Os01t0916950-00
Chr01	irgsp1_rep	five_prime_UTR	39972712	39972905	.	+	.	Parent=Os01t0916950-00
Chr01	irgsp1_rep	five_prime_UTR	39973153	39973241	.	+	.	Parent=Os01t0916950-00
Chr01	irgsp1_rep	five_prime_UTR	39973330	39973382	.	+	.	Parent=Os01t0916950-00
Chr01	irgsp1_rep	five_prime_UTR	39973843	39973931	.	+	.	Parent=Os01t0916950-00
Chr01	irgsp1_rep	five_prime_UTR	39974138	39974207	.	+	.	Parent=Os01t0916950-00
Chr01	irgsp1_rep	five_prime_UTR	39974309	39974362	.	+	.	Parent=Os01t0916950-00
Chr01	irgsp1_rep	five_prime_UTR	39974486	39974531	.	+	.	Parent=Os01t0916950-00
Chr01	irgsp1_rep	five_prime_UTR	39975508	39975536	.	+	.	Parent=Os01t0916950-00
Chr01	irgsp1_rep	CDS	39975537	39975631	.	+	0	Parent=Os01t0916950-00
Chr01	irgsp1_rep	CDS	39975755	39976108	.	+	1	Parent=Os01t0916950-00
Chr01	irgsp1_rep	mRNA	39985223	39986495	.	+	.	ID=Os01t0917100-01;Name=Os01t0917100-01;Locus_id=Os01g0917100;Note=Protein of unknown function DUF1675 domain containing protein.;Transcript_evidence=AK107234 (DDBJ%2C Best hit);ORF_evidence=A2WYC7 (UniProt);InterPro=Protein of unknown function DUF1675 (IPR012463);NIAS_FLcDNA=002-125-E10;Expression=AK107234;TENOR=Os01t0917100-01;KEGG=Os01t0917100-01
Chr01	irgsp1_rep	five_prime_UTR	39985223	39985374	.	+	.	Parent=Os01t0917100-01
Chr01	irgsp1_rep	CDS	39985375	39985621	.	+	0	Parent=Os01t0917100-01
Chr01	irgsp1_rep	CDS	39985757	39986172	.	+	2	Parent=Os01t0917100-01
Chr01	irgsp1_rep	three_prime_UTR	39986173	39986495	.	+	.	Parent=Os01t0917100-01
Chr01	irgsp1_rep	mRNA	39991966	39994903	.	+	.	ID=Os01t0917200-01;Name=Os01t0917200-01;Locus_id=Os01g0917200;Note=Peptidase%2C trypsin-like serine and cysteine proteases domain containing protein.;Transcript_evidence=AK288071 (DDBJ%2C Best hit);ORF_evidence=Q5JLC5 (UniProt);NIAS_FLcDNA=J075161A16;TENOR=Os01t0917200-01;KEGG=Os01t0917200-01
Chr01	irgsp1_rep	five_prime_UTR	39991966	39992179	.	+	.	Parent=Os01t0917200-01
Chr01	irgsp1_rep	CDS	39992180	39992442	.	+	0	Parent=Os01t0917200-01
Chr01	irgsp1_rep	CDS	39993323	39994712	.	+	1	Parent=Os01t0917200-01
Chr01	irgsp1_rep	three_prime_UTR	39994713	39994903	.	+	.	Parent=Os01t0917200-01
Chr01	irgsp1_rep	mRNA	39998120	39999062	.	-	.	ID=Os01t0917300-01;Name=Os01t0917300-01;Locus_id=Os01g0917300;Note=Similar to Cysteine-rich peptide.;Transcript_evidence=AK240939 (DDBJ%2C Best hit);ORF_evidence=D7NXT9 (UniProt);NIAS_FLcDNA=J065041P21;TENOR=Os01t0917300-01;KEGG=Os01t0917300-01
Chr01	irgsp1_rep	five_prime_UTR	39998890	39999062	.	-	.	Parent=Os01t0917300-01
Chr01	irgsp1_rep	CDS	39998803	39998889	.	-	0	Parent=Os01t0917300-01
Chr01	irgsp1_rep	CDS	39998422	39998712	.	-	0	Parent=Os01t0917300-01
Chr01	irgsp1_rep	three_prime_UTR	39998120	39998421	.	-	.	Parent=Os01t0917300-01
Chr01	irgsp1_rep	mRNA	40006545	40010924	.	-	.	ID=Os01t0917400-01;Name=Os01t0917400-01;Locus_id=Os01g0917400;RAP-DB Gene Symbol Synonym(s)=C3H12%2C OsC3H12;RAP-DB Gene Name Synonym(s)=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12%2C Zinc finger CCCH domain-containing protein 12%2C Zinc finger CCCH domain-containing protein ZFN-like 2;CGSNL Gene Symbol=C3H12;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12;Oryzabase Gene Symbol Synonym(s)=OsC3H12;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 12%2C Zinc finger CCCH domain-containing protein ZFN-like 2;Note=CCCH-type zinc finger protein%2C Resistance against bacterial blight disease;Transcript_evidence=JF799943 (Minghui 63),AK098948;ORF_evidence=H6BEJ8,Q5JLB5;GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=J013050D10;Manual Curation=September 17%2C 2014;Literature_PMID=22158700;Oryzabase=8575;TENOR=Os01t0917400-01;KEGG=Os01t0917400-01
Chr01	irgsp1_rep	five_prime_UTR	40010777	40010924	.	-	.	Parent=Os01t0917400-01
Chr01	irgsp1_rep	CDS	40010605	40010776	.	-	0	Parent=Os01t0917400-01
Chr01	irgsp1_rep	CDS	40009891	40010051	.	-	2	Parent=Os01t0917400-01
Chr01	irgsp1_rep	CDS	40009455	40009517	.	-	0	Parent=Os01t0917400-01
Chr01	irgsp1_rep	CDS	40008853	40008972	.	-	0	Parent=Os01t0917400-01
Chr01	irgsp1_rep	CDS	40008465	40008758	.	-	0	Parent=Os01t0917400-01
Chr01	irgsp1_rep	CDS	40007389	40007715	.	-	0	Parent=Os01t0917400-01
Chr01	irgsp1_rep	CDS	40006728	40006910	.	-	0	Parent=Os01t0917400-01
Chr01	irgsp1_rep	three_prime_UTR	40006545	40006727	.	-	.	Parent=Os01t0917400-01
Chr01	irgsp1_rep	mRNA	40006067	40009602	.	-	.	ID=Os01t0917400-02;Name=Os01t0917400-02;Locus_id=Os01g0917400;CGSNL Gene Symbol=C3H12;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12;Oryzabase Gene Symbol Synonym(s)=OsC3H12;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 12%2C Zinc finger CCCH domain-containing protein ZFN-like 2;Note=Zinc finger%2C CCCH-type domain containing protein.;Transcript_evidence=AK112102 (DDBJ%2C Best hit);ORF_evidence=B9EVV7 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=002-110-B05;Oryzabase=8575;TENOR=Os01t0917400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	40009518	40009602	.	-	.	Parent=Os01t0917400-02
Chr01	irgsp1_rep	CDS	40009455	40009517	.	-	0	Parent=Os01t0917400-02
Chr01	irgsp1_rep	CDS	40008853	40008972	.	-	0	Parent=Os01t0917400-02
Chr01	irgsp1_rep	CDS	40008465	40008758	.	-	0	Parent=Os01t0917400-02
Chr01	irgsp1_rep	CDS	40007389	40007715	.	-	0	Parent=Os01t0917400-02
Chr01	irgsp1_rep	CDS	40006728	40006910	.	-	0	Parent=Os01t0917400-02
Chr01	irgsp1_rep	three_prime_UTR	40006067	40006727	.	-	.	Parent=Os01t0917400-02
Chr01	irgsp1_rep	mRNA	40006543	40008672	.	-	.	ID=Os01t0917400-03;Name=Os01t0917400-03;Locus_id=Os01g0917400;CGSNL Gene Symbol=C3H12;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12;Oryzabase Gene Symbol Synonym(s)=OsC3H12;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 12%2C Zinc finger CCCH domain-containing protein ZFN-like 2;Note=Hypothetical conserved gene.;Transcript_evidence=AK111958 (DDBJ%2C Best hit);ORF_evidence=B9EVV7 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=001-030-A08;Oryzabase=8575;TENOR=Os01t0917400-03;KEGG=Os01t0917400-03
Chr01	irgsp1_rep	five_prime_UTR	40008672	40008672	.	-	.	Parent=Os01t0917400-03
Chr01	irgsp1_rep	CDS	40008465	40008671	.	-	0	Parent=Os01t0917400-03
Chr01	irgsp1_rep	CDS	40007389	40007715	.	-	0	Parent=Os01t0917400-03
Chr01	irgsp1_rep	CDS	40006728	40006910	.	-	0	Parent=Os01t0917400-03
Chr01	irgsp1_rep	three_prime_UTR	40006543	40006727	.	-	.	Parent=Os01t0917400-03
Chr01	irgsp1_rep	mRNA	40018401	40023853	.	+	.	ID=Os01t0917500-01;Name=Os01t0917500-01;Locus_id=Os01g0917500;RAP-DB Gene Symbol Synonym(s)=MSP1%2C Msp1;RAP-DB Gene Name Synonym(s)=MULTIPLE SPOROCYTE 1%2C MULTIPLE SPOROCYTE1%2C multiple sporocyte%2C multiple sporogeneous cells-1;CGSNL Gene Symbol=MSP1;CGSNL Gene Name=MULTIPLE SPOROCYTE 1;Oryzabase Gene Symbol Synonym(s)=Msp1%2C OsMSP1;Oryzabase Gene Name Synonym(s)=MULTIPLE SPOROCYTE1%2C multiple sporocyte%2C multiple sporogeneous cells-1%2C MULTIPLE SPOROCYTES1;Note=Leucine-rich repeat receptor-like kinase%2C Specification of anther cell identity%2C Control of early sporogenic development%2C Initiation of anther wall formation;Transcript_evidence=AB103395;ORF_evidence=Q8RZV7;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=Leucine-rich repeat-containing N-terminal%2C plant-type (IPR013210),Leucine-rich repeat domain%2C L domain-like (IPR032675),Concanavalin A-like lectin/glucanase domain (IPR013320),Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J023036G04;Manual Curation=July 13%2C 2016;Literature_PMID=27208278,12897248;Oryzabase=2981;Expression=AK120933;TENOR=Os01t0917500-01;KEGG=Os01t0917500-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	40018401	40018791	.	+	.	Parent=Os01t0917500-01
Chr01	irgsp1_rep	five_prime_UTR	40019040	40019111	.	+	.	Parent=Os01t0917500-01
Chr01	irgsp1_rep	five_prime_UTR	40019658	40019692	.	+	.	Parent=Os01t0917500-01
Chr01	irgsp1_rep	CDS	40019693	40023577	.	+	0	Parent=Os01t0917500-01
Chr01	irgsp1_rep	three_prime_UTR	40023578	40023853	.	+	.	Parent=Os01t0917500-01
Chr01	irgsp1_rep	mRNA	40029945	40030969	.	-	.	ID=Os01t0917700-00;Name=Os01t0917700-00;Locus_id=Os01g0917700;Note=Similar to wiscott-Aldrich syndrome%2C C-terminal.;Transcript_evidence=EU972186 (DDBJ);ORF_evidence=NP_001150347.1 (RefSeq);TENOR=Os01t0917700-00;KEGG=Os01t0917700-00
Chr01	irgsp1_rep	five_prime_UTR	40030946	40030969	.	-	.	Parent=Os01t0917700-00
Chr01	irgsp1_rep	CDS	40030815	40030945	.	-	0	Parent=Os01t0917700-00
Chr01	irgsp1_rep	CDS	40029945	40030707	.	-	1	Parent=Os01t0917700-00
Chr01	irgsp1_rep	mRNA	40030264	40030983	.	+	.	ID=Os01t0917801-00;Name=Os01t0917801-00;Locus_id=Os01g0917801;Note=Hypothetical conserved gene.;Transcript_evidence=BT060591 (DDBJ);ORF_evidence=B9EVV9 (UniProt);TENOR=Os01t0917801-00;KEGG=Os01t0917801-00
Chr01	irgsp1_rep	five_prime_UTR	40030264	40030316	.	+	.	Parent=Os01t0917801-00
Chr01	irgsp1_rep	CDS	40030317	40030955	.	+	0	Parent=Os01t0917801-00
Chr01	irgsp1_rep	three_prime_UTR	40030956	40030983	.	+	.	Parent=Os01t0917801-00
Chr01	irgsp1_rep	mRNA	40036041	40037441	.	-	.	ID=Os01t0917900-01;Name=Os01t0917900-01;Locus_id=Os01g0917900;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK109460 (DDBJ%2C Best hit);ORF_evidence=B8A8H8 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=001-127-C08;Expression=AK109460;TENOR=Os01t0917900-01;KEGG=Os01t0917900-01
Chr01	irgsp1_rep	five_prime_UTR	40037311	40037441	.	-	.	Parent=Os01t0917900-01
Chr01	irgsp1_rep	CDS	40036369	40037310	.	-	0	Parent=Os01t0917900-01
Chr01	irgsp1_rep	three_prime_UTR	40036041	40036368	.	-	.	Parent=Os01t0917900-01
Chr01	irgsp1_rep	mRNA	40056074	40059404	.	-	.	ID=Os01t0918100-01;Name=Os01t0918100-01;Locus_id=Os01g0918100;Note=Conserved hypothetical protein.;Transcript_evidence=AK108783 (DDBJ%2C Best hit);ORF_evidence=B8A8H9 (UniProt);NIAS_FLcDNA=002-151-A08;Expression=AK108783;TENOR=Os01t0918100-01;KEGG=Os01t0918100-01
Chr01	irgsp1_rep	five_prime_UTR	40059200	40059404	.	-	.	Parent=Os01t0918100-01
Chr01	irgsp1_rep	CDS	40059168	40059199	.	-	0	Parent=Os01t0918100-01
Chr01	irgsp1_rep	CDS	40058205	40058260	.	-	1	Parent=Os01t0918100-01
Chr01	irgsp1_rep	CDS	40057985	40058119	.	-	2	Parent=Os01t0918100-01
Chr01	irgsp1_rep	CDS	40057430	40057518	.	-	2	Parent=Os01t0918100-01
Chr01	irgsp1_rep	CDS	40057175	40057238	.	-	0	Parent=Os01t0918100-01
Chr01	irgsp1_rep	CDS	40056942	40057100	.	-	2	Parent=Os01t0918100-01
Chr01	irgsp1_rep	CDS	40056773	40056853	.	-	2	Parent=Os01t0918100-01
Chr01	irgsp1_rep	CDS	40056418	40056692	.	-	2	Parent=Os01t0918100-01
Chr01	irgsp1_rep	three_prime_UTR	40056074	40056417	.	-	.	Parent=Os01t0918100-01
Chr01	irgsp1_rep	mRNA	40061648	40063633	.	-	.	ID=Os01t0918200-01;Name=Os01t0918200-01;Locus_id=Os01g0918200;CGSNL Gene Symbol=SUMO2;CGSNL Gene Name=SMALL UBIQUITIN LIKE MODIFIER 2;Oryzabase Gene Symbol Synonym(s)=OsSUMO2;Oryzabase Gene Name Synonym(s)=small ubiquitin like modifier 2%2C small ubiquitin like modifier protein 2%2C SUMO protein 2;Note=Similar to Ubiquitin-like protein SMT3.;Transcript_evidence=AK103092 (DDBJ%2C Best hit),AK062434 (DDBJ%2C Best hit);ORF_evidence=P55857 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin (IPR000626),Ubiquitin supergroup (IPR019955),Small ubiquitin-related modifier%2C SUMO (IPR022617);NIAS_FLcDNA=J033118J24,001-103-A02;Oryzabase=22916;Expression=AK103092;TENOR=Os01t0918200-01;KEGG=Os01t0918200-01
Chr01	irgsp1_rep	five_prime_UTR	40063524	40063633	.	-	.	Parent=Os01t0918200-01
Chr01	irgsp1_rep	CDS	40063437	40063523	.	-	0	Parent=Os01t0918200-01
Chr01	irgsp1_rep	CDS	40062032	40062181	.	-	0	Parent=Os01t0918200-01
Chr01	irgsp1_rep	CDS	40061847	40061915	.	-	0	Parent=Os01t0918200-01
Chr01	irgsp1_rep	three_prime_UTR	40061648	40061846	.	-	.	Parent=Os01t0918200-01
Chr01	irgsp1_rep	mRNA	40064408	40066375	.	-	.	ID=Os01t0918300-01;Name=Os01t0918300-01;Locus_id=Os01g0918300;CGSNL Gene Symbol=SUMO1;CGSNL Gene Name=SMALL UBIQUITIN LIKE MODIFIER 1;Oryzabase Gene Symbol Synonym(s)=smt3%2C SMT3%2C OsSUMO1;Oryzabase Gene Name Synonym(s)=small ubiquitin like modifier 1%2C small ubiquitin like modifier protein 1%2C SUMO protein 1;Note=Ubiquitin-like protein SMT3.;Transcript_evidence=AK058869 (DDBJ%2C Best hit);ORF_evidence=P55857 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin (IPR000626),Ubiquitin supergroup (IPR019955),Small ubiquitin-related modifier%2C SUMO (IPR022617);NIAS_FLcDNA=001-006-C03;Oryzabase=14328;Expression=AK058869;TENOR=Os01t0918300-01;KEGG=Os01t0918300-01
Chr01	irgsp1_rep	five_prime_UTR	40066274	40066375	.	-	.	Parent=Os01t0918300-01
Chr01	irgsp1_rep	CDS	40066190	40066273	.	-	0	Parent=Os01t0918300-01
Chr01	irgsp1_rep	CDS	40064812	40064961	.	-	0	Parent=Os01t0918300-01
Chr01	irgsp1_rep	CDS	40064645	40064713	.	-	0	Parent=Os01t0918300-01
Chr01	irgsp1_rep	three_prime_UTR	40064408	40064644	.	-	.	Parent=Os01t0918300-01
Chr01	irgsp1_rep	mRNA	40064408	40066375	.	-	.	ID=Os01t0918300-02;Name=Os01t0918300-02;Locus_id=Os01g0918300;CGSNL Gene Symbol=SUMO1;CGSNL Gene Name=SMALL UBIQUITIN LIKE MODIFIER 1;Oryzabase Gene Symbol Synonym(s)=smt3%2C SMT3%2C OsSUMO1;Oryzabase Gene Name Synonym(s)=small ubiquitin like modifier 1%2C small ubiquitin like modifier protein 1%2C SUMO protein 1;Note=Similar to Ubiquitin-like protein SMT3.;Transcript_evidence=AK069668 (DDBJ%2C Best hit);ORF_evidence=P55857 (UniProt);InterPro=Small ubiquitin-related modifier%2C SUMO (IPR022617);NIAS_FLcDNA=J023026B05;Oryzabase=14328;Expression=AK069668;TENOR=Os01t0918300-02;KEGG=Os01t0918300-02
Chr01	irgsp1_rep	five_prime_UTR	40064962	40066375	.	-	.	Parent=Os01t0918300-02
Chr01	irgsp1_rep	CDS	40064761	40064961	.	-	0	Parent=Os01t0918300-02
Chr01	irgsp1_rep	three_prime_UTR	40064408	40064760	.	-	.	Parent=Os01t0918300-02
Chr01	irgsp1_rep	mRNA	40067581	40069618	.	+	.	ID=Os01t0918400-00;Name=Os01t0918400-00;Locus_id=Os01g0918400;Note=Conserved hypothetical protein.;Transcript_evidence=AK361582 (DDBJ);ORF_evidence=F2DA59 (UniProt);TENOR=Os01t0918400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	40067581	40068131	.	+	0	Parent=Os01t0918400-00
Chr01	irgsp1_rep	CDS	40069176	40069236	.	+	1	Parent=Os01t0918400-00
Chr01	irgsp1_rep	three_prime_UTR	40069237	40069382	.	+	.	Parent=Os01t0918400-00
Chr01	irgsp1_rep	three_prime_UTR	40069487	40069618	.	+	.	Parent=Os01t0918400-00
Chr01	irgsp1_rep	mRNA	40070821	40073753	.	-	.	ID=Os01t0918500-01;Name=Os01t0918500-01;Locus_id=Os01g0918500;CGSNL Gene Symbol=RYMV2;CGSNL Gene Name=RESISTANCE TO YELLOW MOTTLE 2;Oryzabase Gene Symbol Synonym(s)=OsCPR5-1%2C CPR5-1%2C OsRYMV2;Oryzabase Gene Name Synonym(s)=constitutive expresser of pathogenesisrelated genes 5-1;Note=Conserved hypothetical protein.;Transcript_evidence=AK072446 (DDBJ%2C Best hit);ORF_evidence=Q5JLB2 (UniProt);NIAS_FLcDNA=J023111G02;Oryzabase=8875;TENOR=Os01t0918500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	40073728	40073753	.	-	.	Parent=Os01t0918500-01
Chr01	irgsp1_rep	CDS	40073425	40073727	.	-	0	Parent=Os01t0918500-01
Chr01	irgsp1_rep	three_prime_UTR	40071728	40073424	.	-	.	Parent=Os01t0918500-01
Chr01	irgsp1_rep	three_prime_UTR	40070821	40071628	.	-	.	Parent=Os01t0918500-01
Chr01	irgsp1_rep	mRNA	40093456	40097016	.	+	.	ID=Os01t0919100-01;Name=Os01t0919100-01;Locus_id=Os01g0919100;RAP-DB Gene Symbol Synonym(s)=OsFRDL4;RAP-DB Gene Name Synonym(s)=FRD3-like protein 4;Oryzabase Gene Symbol Synonym(s)=OsFRDL4%2C FRDL4%2C MATE;Oryzabase Gene Name Synonym(s)=FRD3-like protein 4;Note=Aluminum-induced citrate transporter%2C Aluminum tolerance;Transcript_evidence=AB608020;ORF_evidence=G9M7W8;GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297),Cellular Component: membrane (GO:0016020);InterPro=Multi antimicrobial extrusion protein (IPR002528),Polysaccharide biosynthesis protein%2C C-terminal domain (IPR029303);Manual Curation=April 6%2C 2015;Literature_PMID=21880027;Oryzabase=11142;TENOR=Os01t0919100-00
Chr01	irgsp1_rep	five_prime_UTR	40093456	40093516	.	+	.	Parent=Os01t0919100-01
Chr01	irgsp1_rep	five_prime_UTR	40093689	40093712	.	+	.	Parent=Os01t0919100-01
Chr01	irgsp1_rep	CDS	40093713	40094561	.	+	0	Parent=Os01t0919100-01
Chr01	irgsp1_rep	CDS	40095065	40095200	.	+	0	Parent=Os01t0919100-01
Chr01	irgsp1_rep	CDS	40095285	40095381	.	+	2	Parent=Os01t0919100-01
Chr01	irgsp1_rep	CDS	40095483	40095583	.	+	1	Parent=Os01t0919100-01
Chr01	irgsp1_rep	CDS	40095890	40096053	.	+	2	Parent=Os01t0919100-01
Chr01	irgsp1_rep	CDS	40096148	40096336	.	+	0	Parent=Os01t0919100-01
Chr01	irgsp1_rep	CDS	40096435	40096529	.	+	0	Parent=Os01t0919100-01
Chr01	irgsp1_rep	CDS	40096644	40096766	.	+	1	Parent=Os01t0919100-01
Chr01	irgsp1_rep	CDS	40096941	40096983	.	+	1	Parent=Os01t0919100-01
Chr01	irgsp1_rep	three_prime_UTR	40096984	40097016	.	+	.	Parent=Os01t0919100-01
Chr01	irgsp1_rep	mRNA	40093788	40096767	.	-	.	ID=Os01t0919150-00;Name=Os01t0919150-00;Locus_id=Os01g0919150;Note=Hypothetical protein.;Transcript_evidence=tplb0059f16 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0919150-00
Chr01	irgsp1_rep	five_prime_UTR	40096665	40096767	.	-	.	Parent=Os01t0919150-00
Chr01	irgsp1_rep	five_prime_UTR	40096434	40096546	.	-	.	Parent=Os01t0919150-00
Chr01	irgsp1_rep	five_prime_UTR	40096144	40096335	.	-	.	Parent=Os01t0919150-00
Chr01	irgsp1_rep	five_prime_UTR	40095888	40096049	.	-	.	Parent=Os01t0919150-00
Chr01	irgsp1_rep	five_prime_UTR	40095495	40095581	.	-	.	Parent=Os01t0919150-00
Chr01	irgsp1_rep	five_prime_UTR	40095376	40095395	.	-	.	Parent=Os01t0919150-00
Chr01	irgsp1_rep	CDS	40095274	40095375	.	-	0	Parent=Os01t0919150-00
Chr01	irgsp1_rep	CDS	40095061	40095186	.	-	0	Parent=Os01t0919150-00
Chr01	irgsp1_rep	CDS	40094171	40094557	.	-	0	Parent=Os01t0919150-00
Chr01	irgsp1_rep	three_prime_UTR	40093788	40094170	.	-	.	Parent=Os01t0919150-00
Chr01	irgsp1_rep	mRNA	40097655	40099028	.	-	.	ID=Os01t0919200-01;Name=Os01t0919200-01;Locus_id=Os01g0919200;Note=Bacterial transferase hexapeptide repeat domain containing protein.;Transcript_evidence=AK100437 (DDBJ%2C Best hit),AK071325 (DDBJ%2C Best hit);ORF_evidence=B8A8E1 (UniProt);NIAS_FLcDNA=J023088P12,J023089P04;Expression=AK100437;TENOR=Os01t0919200-01;KEGG=Os01t0919200-01
Chr01	irgsp1_rep	five_prime_UTR	40098940	40099028	.	-	.	Parent=Os01t0919200-01
Chr01	irgsp1_rep	CDS	40097929	40098939	.	-	0	Parent=Os01t0919200-01
Chr01	irgsp1_rep	three_prime_UTR	40097655	40097928	.	-	.	Parent=Os01t0919200-01
Chr01	irgsp1_rep	mRNA	40101744	40106898	.	-	.	ID=Os01t0919400-01;Name=Os01t0919400-01;Locus_id=Os01g0919400;RAP-DB Gene Symbol Synonym(s)=SPS1%2C sps1%2C OsSPS1%2C SPS;RAP-DB Gene Name Synonym(s)=SUCROSE PHOSPHATE SYNTHASE%2C sucrose phosphate synthase%2C Probable sucrose-phosphate synthase%2C UDP-glucose-fructose-phosphate glucosyltransferase%2C sucrose phosphate synthase 1;CGSNL Gene Symbol=SPS1;CGSNL Gene Name=SUCROSE PHOSPHATE SYNTHASE;Oryzabase Gene Symbol Synonym(s)=sps1%2C OsSPS1%2C SPS;Oryzabase Gene Name Synonym(s)=sucrose phosphate synthase%2C Probable sucrose-phosphate synthase%2C UDP-glucose-fructose-phosphate glucosyltransferase%2C sucrose phosphate synthase 1;Note=Sucrose phosphate synthase%2C Sucrose synthesis in pollen germination;Transcript_evidence=D45890;ORF_evidence=Q0JGK4;GO=Biological Process: sucrose metabolic process (GO:0005985),Molecular Function: sucrose synthase activity (GO:0016157),Molecular Function: sucrose-phosphate synthase activity (GO:0046524);InterPro=Sucrose phosphate synthase%2C plant (IPR012819),Sucrose synthase (IPR000368),Glycosyl transferase%2C family 1 (IPR001296),Sucrose-phosphate synthase (IPR006380);Manual Curation=July 17%2C 2015;Literature_PMID=25017165;Oryzabase=6450;TENOR=Os01t0919400-00
Chr01	irgsp1_rep	CDS	40106539	40106898	.	-	0	Parent=Os01t0919400-01
Chr01	irgsp1_rep	CDS	40105661	40105899	.	-	0	Parent=Os01t0919400-01
Chr01	irgsp1_rep	CDS	40105501	40105564	.	-	1	Parent=Os01t0919400-01
Chr01	irgsp1_rep	CDS	40104676	40105368	.	-	0	Parent=Os01t0919400-01
Chr01	irgsp1_rep	CDS	40104407	40104526	.	-	0	Parent=Os01t0919400-01
Chr01	irgsp1_rep	CDS	40104193	40104324	.	-	0	Parent=Os01t0919400-01
Chr01	irgsp1_rep	CDS	40103704	40103880	.	-	0	Parent=Os01t0919400-01
Chr01	irgsp1_rep	CDS	40103542	40103595	.	-	0	Parent=Os01t0919400-01
Chr01	irgsp1_rep	CDS	40103391	40103453	.	-	0	Parent=Os01t0919400-01
Chr01	irgsp1_rep	CDS	40102366	40103301	.	-	0	Parent=Os01t0919400-01
Chr01	irgsp1_rep	CDS	40102127	40102254	.	-	0	Parent=Os01t0919400-01
Chr01	irgsp1_rep	CDS	40101744	40102032	.	-	1	Parent=Os01t0919400-01
Chr01	irgsp1_rep	mRNA	40115909	40120989	.	+	.	ID=Os01t0919500-01;Name=Os01t0919500-01;Locus_id=Os01g0919500;CGSNL Gene Symbol=DLN35;CGSNL Gene Name=DLN REPRESSOR 35;Oryzabase Gene Symbol Synonym(s)=OsDLN35;Oryzabase Gene Name Synonym(s)=DLN repressor 35%2C DLN motif protein 35;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK059108 (DDBJ%2C Best hit),AK105883 (DDBJ%2C Best hit);ORF_evidence=B8A8E3 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=001-022-D10,001-204-D05;Oryzabase=23162;TENOR=Os01t0919500-01
Chr01	irgsp1_rep	five_prime_UTR	40115909	40116072	.	+	.	Parent=Os01t0919500-01
Chr01	irgsp1_rep	five_prime_UTR	40117969	40118013	.	+	.	Parent=Os01t0919500-01
Chr01	irgsp1_rep	CDS	40118014	40118313	.	+	0	Parent=Os01t0919500-01
Chr01	irgsp1_rep	CDS	40118448	40118523	.	+	0	Parent=Os01t0919500-01
Chr01	irgsp1_rep	CDS	40120346	40120476	.	+	2	Parent=Os01t0919500-01
Chr01	irgsp1_rep	CDS	40120559	40120777	.	+	0	Parent=Os01t0919500-01
Chr01	irgsp1_rep	three_prime_UTR	40120778	40120989	.	+	.	Parent=Os01t0919500-01
Chr01	irgsp1_rep	mRNA	40115909	40121002	.	+	.	ID=Os01t0919500-02;Name=Os01t0919500-02;Locus_id=Os01g0919500;CGSNL Gene Symbol=DLN35;CGSNL Gene Name=DLN REPRESSOR 35;Oryzabase Gene Symbol Synonym(s)=OsDLN35;Oryzabase Gene Name Synonym(s)=DLN repressor 35%2C DLN motif protein 35;Note=Hypothetical conserved gene.;Transcript_evidence=AK067058 (DDBJ%2C Best hit);ORF_evidence=B8A8E3 (UniProt);NIAS_FLcDNA=J013091M15;Oryzabase=23162;Expression=AK067058;TENOR=Os01t0919500-02;KEGG=Os01t0919500-02
Chr01	irgsp1_rep	five_prime_UTR	40115909	40116072	.	+	.	Parent=Os01t0919500-02
Chr01	irgsp1_rep	five_prime_UTR	40117969	40118013	.	+	.	Parent=Os01t0919500-02
Chr01	irgsp1_rep	CDS	40118014	40118313	.	+	0	Parent=Os01t0919500-02
Chr01	irgsp1_rep	CDS	40118448	40118523	.	+	0	Parent=Os01t0919500-02
Chr01	irgsp1_rep	CDS	40120346	40120569	.	+	2	Parent=Os01t0919500-02
Chr01	irgsp1_rep	three_prime_UTR	40120570	40121002	.	+	.	Parent=Os01t0919500-02
Chr01	irgsp1_rep	mRNA	40127415	40132359	.	+	.	ID=Os01t0919600-01;Name=Os01t0919600-01;Locus_id=Os01g0919600;Note=Protein of unknown function DUF707 family protein.;Transcript_evidence=AK066408 (DDBJ%2C Best hit);ORF_evidence=B8A8E4 (UniProt);InterPro=Protein of unknown function DUF707 (IPR007877);NIAS_FLcDNA=J013066P10;Expression=AK066408;TENOR=Os01t0919600-01;KEGG=Os01t0919600-01
Chr01	irgsp1_rep	five_prime_UTR	40127415	40127604	.	+	.	Parent=Os01t0919600-01
Chr01	irgsp1_rep	five_prime_UTR	40128522	40128785	.	+	.	Parent=Os01t0919600-01
Chr01	irgsp1_rep	five_prime_UTR	40129017	40129179	.	+	.	Parent=Os01t0919600-01
Chr01	irgsp1_rep	CDS	40129180	40129353	.	+	0	Parent=Os01t0919600-01
Chr01	irgsp1_rep	CDS	40129451	40129636	.	+	0	Parent=Os01t0919600-01
Chr01	irgsp1_rep	CDS	40130420	40130608	.	+	0	Parent=Os01t0919600-01
Chr01	irgsp1_rep	CDS	40130970	40131304	.	+	0	Parent=Os01t0919600-01
Chr01	irgsp1_rep	CDS	40131718	40132141	.	+	1	Parent=Os01t0919600-01
Chr01	irgsp1_rep	three_prime_UTR	40132142	40132359	.	+	.	Parent=Os01t0919600-01
Chr01	irgsp1_rep	mRNA	40130517	40132351	.	+	.	ID=Os01t0919600-02;Name=Os01t0919600-02;Locus_id=Os01g0919600;Note=Similar to predicted protein.;Transcript_evidence=AK061819 (DDBJ%2C Best hit);ORF_evidence=B4FAK0 (UniProt);InterPro=Protein of unknown function DUF707 (IPR007877);NIAS_FLcDNA=001-040-B09;Expression=AK061819;TENOR=Os01t0919600-02;KEGG=Os01t0919600-02
Chr01	irgsp1_rep	five_prime_UTR	40130517	40130518	.	+	.	Parent=Os01t0919600-02
Chr01	irgsp1_rep	CDS	40130519	40130608	.	+	0	Parent=Os01t0919600-02
Chr01	irgsp1_rep	CDS	40130970	40131304	.	+	0	Parent=Os01t0919600-02
Chr01	irgsp1_rep	CDS	40131718	40132141	.	+	1	Parent=Os01t0919600-02
Chr01	irgsp1_rep	three_prime_UTR	40132142	40132351	.	+	.	Parent=Os01t0919600-02
Chr01	irgsp1_rep	mRNA	40133109	40138135	.	+	.	ID=Os01t0919700-01;Name=Os01t0919700-01;Locus_id=Os01g0919700;Note=Alpha/beta hydrolase fold-1 domain containing protein.;Transcript_evidence=AK059028 (DDBJ%2C Best hit);ORF_evidence=B6SRX1 (UniProt);InterPro=Alpha/beta hydrolase fold-1 (IPR000073);NIAS_FLcDNA=001-021-B12;Expression=AK059028;TENOR=Os01t0919700-01;KEGG=Os01t0919700-01
Chr01	irgsp1_rep	five_prime_UTR	40133109	40133129	.	+	.	Parent=Os01t0919700-01
Chr01	irgsp1_rep	CDS	40133130	40133249	.	+	0	Parent=Os01t0919700-01
Chr01	irgsp1_rep	CDS	40133330	40133387	.	+	0	Parent=Os01t0919700-01
Chr01	irgsp1_rep	CDS	40133523	40133578	.	+	2	Parent=Os01t0919700-01
Chr01	irgsp1_rep	CDS	40133817	40133917	.	+	0	Parent=Os01t0919700-01
Chr01	irgsp1_rep	CDS	40134077	40134146	.	+	1	Parent=Os01t0919700-01
Chr01	irgsp1_rep	CDS	40134242	40134311	.	+	0	Parent=Os01t0919700-01
Chr01	irgsp1_rep	CDS	40134711	40134767	.	+	2	Parent=Os01t0919700-01
Chr01	irgsp1_rep	CDS	40134851	40134918	.	+	2	Parent=Os01t0919700-01
Chr01	irgsp1_rep	CDS	40134999	40135079	.	+	0	Parent=Os01t0919700-01
Chr01	irgsp1_rep	CDS	40135215	40135292	.	+	0	Parent=Os01t0919700-01
Chr01	irgsp1_rep	CDS	40135385	40135540	.	+	0	Parent=Os01t0919700-01
Chr01	irgsp1_rep	CDS	40135615	40135767	.	+	0	Parent=Os01t0919700-01
Chr01	irgsp1_rep	CDS	40135994	40136058	.	+	0	Parent=Os01t0919700-01
Chr01	irgsp1_rep	CDS	40137590	40137596	.	+	1	Parent=Os01t0919700-01
Chr01	irgsp1_rep	three_prime_UTR	40137597	40137652	.	+	.	Parent=Os01t0919700-01
Chr01	irgsp1_rep	three_prime_UTR	40137755	40138135	.	+	.	Parent=Os01t0919700-01
Chr01	irgsp1_rep	mRNA	40136226	40142760	.	-	.	ID=Os01t0919800-01;Name=Os01t0919800-01;Locus_id=Os01g0919800;CGSNL Gene Symbol=PIN5A;CGSNL Gene Name=PIN PROTEIN 5A;Oryzabase Gene Symbol Synonym(s)=OsPIN5a%2C OsPIN6;Note=Similar to Efflux carrier of polar auxin transport.;Transcript_evidence=AK066552 (DDBJ%2C Best hit);ORF_evidence=NP_001148155.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Auxin efflux carrier (IPR004776),Auxin efflux carrier%2C plant type (IPR014024);NIAS_FLcDNA=J013074K05;Oryzabase=8936;Expression=AK066552;TENOR=Os01t0919800-01;KEGG=Os01t0919800-01
Chr01	irgsp1_rep	five_prime_UTR	40142647	40142760	.	-	.	Parent=Os01t0919800-01
Chr01	irgsp1_rep	CDS	40142449	40142646	.	-	0	Parent=Os01t0919800-01
Chr01	irgsp1_rep	CDS	40141808	40142307	.	-	0	Parent=Os01t0919800-01
Chr01	irgsp1_rep	CDS	40141054	40141139	.	-	1	Parent=Os01t0919800-01
Chr01	irgsp1_rep	CDS	40139789	40139949	.	-	2	Parent=Os01t0919800-01
Chr01	irgsp1_rep	CDS	40136617	40136690	.	-	0	Parent=Os01t0919800-01
Chr01	irgsp1_rep	CDS	40136437	40136509	.	-	1	Parent=Os01t0919800-01
Chr01	irgsp1_rep	three_prime_UTR	40136226	40136436	.	-	.	Parent=Os01t0919800-01
Chr01	irgsp1_rep	mRNA	40146818	40150808	.	-	.	ID=Os01t0919900-01;Name=Os01t0919900-01;Locus_id=Os01g0919900;RAP-DB Gene Symbol Synonym(s)=OsSSI2;Oryzabase Gene Symbol Synonym(s)=OsSSI2;Oryzabase Gene Name Synonym(s)=fatty-acid desaturase OsSSI2;Note=Fatty acid desaturase%2C Rice ortholog of SSI2%2C Negative regulation of defense responses;Transcript_evidence=AK103568,AK058979;ORF_evidence=Q8S059;GO=Biological Process: fatty acid metabolic process (GO:0006631),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: acyl-[acyl-carrier-protein] desaturase activity (GO:0045300);InterPro=Ribonucleotide reductase-like (IPR012348),Ferritin-like superfamily (IPR009078),Fatty acid desaturase%2C type 2 (IPR005067);NIAS_FLcDNA=J033132M08,001-020-D09;Manual Curation=October 16%2C 2020;Literature_PMID=19522564;Oryzabase=12354;TENOR=Os01t0919900-01
Chr01	irgsp1_rep	five_prime_UTR	40150714	40150808	.	-	.	Parent=Os01t0919900-01
Chr01	irgsp1_rep	CDS	40150571	40150713	.	-	0	Parent=Os01t0919900-01
Chr01	irgsp1_rep	CDS	40148046	40148544	.	-	1	Parent=Os01t0919900-01
Chr01	irgsp1_rep	CDS	40147146	40147706	.	-	0	Parent=Os01t0919900-01
Chr01	irgsp1_rep	three_prime_UTR	40146818	40147145	.	-	.	Parent=Os01t0919900-01
Chr01	irgsp1_rep	mRNA	40146869	40148337	.	-	.	ID=Os01t0919900-02;Name=Os01t0919900-02;Locus_id=Os01g0919900;Oryzabase Gene Symbol Synonym(s)=OsSSI2;Oryzabase Gene Name Synonym(s)=fatty-acid desaturase OsSSI2;Note=Similar to Acyl-desaturase.;Transcript_evidence=AK060087 (DDBJ%2C Best hit);ORF_evidence=Q8S059 (UniProt);GO=Biological Process: fatty acid metabolic process (GO:0006631),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: acyl-[acyl-carrier-protein] desaturase activity (GO:0045300),Molecular Function: transition metal ion binding (GO:0046914);InterPro=Fatty acid desaturase%2C type 2 (IPR005067),Ferritin/ribonucleotide reductase-like (IPR009078),Ribonucleotide reductase-related (IPR012348);NIAS_FLcDNA=006-306-G08;Oryzabase=12354;Expression=AK060087;TENOR=Os01t0919900-02;KEGG=Os01t0919900-02
Chr01	irgsp1_rep	five_prime_UTR	40148337	40148337	.	-	.	Parent=Os01t0919900-02
Chr01	irgsp1_rep	CDS	40148046	40148336	.	-	0	Parent=Os01t0919900-02
Chr01	irgsp1_rep	CDS	40147146	40147706	.	-	0	Parent=Os01t0919900-02
Chr01	irgsp1_rep	three_prime_UTR	40146869	40147145	.	-	.	Parent=Os01t0919900-02
Chr01	irgsp1_rep	mRNA	40147145	40148504	.	+	.	ID=Os01t0919950-00;Name=Os01t0919950-00;Locus_id=Os01g0919950;Note=Hypothetical protein.;Transcript_evidence=tplb0059g06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0919950-00
Chr01	irgsp1_rep	five_prime_UTR	40147145	40147695	.	+	.	Parent=Os01t0919950-00
Chr01	irgsp1_rep	five_prime_UTR	40148035	40148138	.	+	.	Parent=Os01t0919950-00
Chr01	irgsp1_rep	CDS	40148139	40148360	.	+	0	Parent=Os01t0919950-00
Chr01	irgsp1_rep	three_prime_UTR	40148361	40148504	.	+	.	Parent=Os01t0919950-00
Chr01	irgsp1_rep	mRNA	40153314	40157441	.	-	.	ID=Os01t0920000-01;Name=Os01t0920000-01;Locus_id=Os01g0920000;Oryzabase Gene Symbol Synonym(s)=OsCBSCBS5;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSCBS5%2C CBS domain containing protein OsCBSCBS5;Note=Cystathionine beta-synthase%2C core domain containing protein.;Transcript_evidence=AK069967 (DDBJ%2C Best hit);ORF_evidence=B6SWR6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Cystathionine beta-synthase%2C core (IPR000644);NIAS_FLcDNA=J023038I11;Oryzabase=10350;Expression=AK069967;TENOR=Os01t0920000-01;KEGG=Os01t0920000-01
Chr01	irgsp1_rep	five_prime_UTR	40157183	40157441	.	-	.	Parent=Os01t0920000-01
Chr01	irgsp1_rep	CDS	40157098	40157182	.	-	0	Parent=Os01t0920000-01
Chr01	irgsp1_rep	CDS	40156860	40157037	.	-	2	Parent=Os01t0920000-01
Chr01	irgsp1_rep	CDS	40153498	40154389	.	-	1	Parent=Os01t0920000-01
Chr01	irgsp1_rep	three_prime_UTR	40153314	40153497	.	-	.	Parent=Os01t0920000-01
Chr01	irgsp1_rep	mRNA	40153226	40154134	.	-	.	ID=Os01t0920000-02;Name=Os01t0920000-02;Locus_id=Os01g0920000;Oryzabase Gene Symbol Synonym(s)=OsCBSCBS5;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSCBS5%2C CBS domain containing protein OsCBSCBS5;Note=Cystathionine beta-synthase%2C core domain containing protein.;Transcript_evidence=AK060073 (DDBJ%2C Best hit);ORF_evidence=B6SWR6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Cystathionine beta-synthase%2C core (IPR000644);NIAS_FLcDNA=006-306-B04;Oryzabase=10350;Expression=AK060073;TENOR=Os01t0920000-02;KEGG=Os01t0920000-02
Chr01	irgsp1_rep	five_prime_UTR	40154134	40154134	.	-	.	Parent=Os01t0920000-02
Chr01	irgsp1_rep	CDS	40153498	40154133	.	-	0	Parent=Os01t0920000-02
Chr01	irgsp1_rep	three_prime_UTR	40153226	40153497	.	-	.	Parent=Os01t0920000-02
Chr01	irgsp1_rep	mRNA	40167809	40170157	.	+	.	ID=Os01t0920100-01;Name=Os01t0920100-01;Locus_id=Os01g0920100;Note=Conserved hypothetical protein.;Transcript_evidence=AK069808 (DDBJ%2C Best hit);ORF_evidence=A2WYF6 (UniProt);NIAS_FLcDNA=J023026C15;Expression=AK069808;TENOR=Os01t0920100-01;KEGG=Os01t0920100-01
Chr01	irgsp1_rep	five_prime_UTR	40167809	40167978	.	+	.	Parent=Os01t0920100-01
Chr01	irgsp1_rep	CDS	40167979	40168168	.	+	0	Parent=Os01t0920100-01
Chr01	irgsp1_rep	CDS	40168894	40168974	.	+	2	Parent=Os01t0920100-01
Chr01	irgsp1_rep	CDS	40169492	40169916	.	+	2	Parent=Os01t0920100-01
Chr01	irgsp1_rep	three_prime_UTR	40169917	40170157	.	+	.	Parent=Os01t0920100-01
Chr01	irgsp1_rep	mRNA	40170926	40173290	.	-	.	ID=Os01t0920200-01;Name=Os01t0920200-01;Locus_id=Os01g0920200;Note=Similar to E(Y)2 homolog (DC6) (Enhancer of yellow 2 homolog).;Transcript_evidence=AK120182 (DDBJ%2C Best hit);ORF_evidence=B6T6J7 (UniProt);InterPro=Transcription factor%2C enhancer of yellow 2 (IPR018783);NIAS_FLcDNA=J013034A14;Expression=AK120182;TENOR=Os01t0920200-01;KEGG=Os01t0920200-01
Chr01	irgsp1_rep	five_prime_UTR	40173224	40173290	.	-	.	Parent=Os01t0920200-01
Chr01	irgsp1_rep	CDS	40173222	40173223	.	-	0	Parent=Os01t0920200-01
Chr01	irgsp1_rep	CDS	40172941	40173028	.	-	1	Parent=Os01t0920200-01
Chr01	irgsp1_rep	CDS	40172537	40172631	.	-	0	Parent=Os01t0920200-01
Chr01	irgsp1_rep	CDS	40171760	40171836	.	-	1	Parent=Os01t0920200-01
Chr01	irgsp1_rep	CDS	40171250	40171329	.	-	2	Parent=Os01t0920200-01
Chr01	irgsp1_rep	three_prime_UTR	40170926	40171249	.	-	.	Parent=Os01t0920200-01
Chr01	irgsp1_rep	mRNA	40177696	40181547	.	+	.	ID=Os01t0920300-01;Name=Os01t0920300-01;Locus_id=Os01g0920300;Note=Methyltransferase small domain containing protein.;Transcript_evidence=AK067201 (DDBJ%2C Best hit);ORF_evidence=B8A8E8 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Methyltransferase small (IPR007848);NIAS_FLcDNA=J013098F12;TENOR=Os01t0920300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	40177696	40177696	.	+	.	Parent=Os01t0920300-01
Chr01	irgsp1_rep	CDS	40177697	40177768	.	+	0	Parent=Os01t0920300-01
Chr01	irgsp1_rep	CDS	40177910	40177993	.	+	0	Parent=Os01t0920300-01
Chr01	irgsp1_rep	CDS	40178552	40178665	.	+	0	Parent=Os01t0920300-01
Chr01	irgsp1_rep	CDS	40178919	40179037	.	+	0	Parent=Os01t0920300-01
Chr01	irgsp1_rep	CDS	40179805	40179922	.	+	1	Parent=Os01t0920300-01
Chr01	irgsp1_rep	CDS	40180005	40180135	.	+	0	Parent=Os01t0920300-01
Chr01	irgsp1_rep	CDS	40180276	40180429	.	+	1	Parent=Os01t0920300-01
Chr01	irgsp1_rep	CDS	40180663	40180742	.	+	0	Parent=Os01t0920300-01
Chr01	irgsp1_rep	CDS	40181267	40181351	.	+	1	Parent=Os01t0920300-01
Chr01	irgsp1_rep	three_prime_UTR	40181352	40181547	.	+	.	Parent=Os01t0920300-01
Chr01	irgsp1_rep	mRNA	40178918	40181549	.	+	.	ID=Os01t0920300-02;Name=Os01t0920300-02;Locus_id=Os01g0920300;Note=Methyltransferase small domain containing protein.;Transcript_evidence=AK062088 (DDBJ%2C Best hit);ORF_evidence=B8A8E8 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Methyltransferase small (IPR007848);NIAS_FLcDNA=001-044-G07;TENOR=Os01t0920300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	40178918	40178918	.	+	.	Parent=Os01t0920300-02
Chr01	irgsp1_rep	CDS	40178919	40179037	.	+	0	Parent=Os01t0920300-02
Chr01	irgsp1_rep	CDS	40179805	40179922	.	+	1	Parent=Os01t0920300-02
Chr01	irgsp1_rep	CDS	40180005	40180135	.	+	0	Parent=Os01t0920300-02
Chr01	irgsp1_rep	CDS	40180276	40180429	.	+	1	Parent=Os01t0920300-02
Chr01	irgsp1_rep	CDS	40180663	40180742	.	+	0	Parent=Os01t0920300-02
Chr01	irgsp1_rep	CDS	40181267	40181351	.	+	1	Parent=Os01t0920300-02
Chr01	irgsp1_rep	three_prime_UTR	40181352	40181549	.	+	.	Parent=Os01t0920300-02
Chr01	irgsp1_rep	mRNA	40182781	40190881	.	-	.	ID=Os01t0920400-01;Name=Os01t0920400-01;Locus_id=Os01g0920400;Oryzabase Gene Symbol Synonym(s)=OsDRP3A%2C DRP3A;Oryzabase Gene Name Synonym(s)=dynamin-related protein 3A;Note=Similar to Dynamin-related protein 3A (Dynamin-like protein 2) (Dynamin-like protein 2a). Splice isoform 2.;Transcript_evidence=AK073965 (DDBJ%2C Best hit);ORF_evidence=NP_567931.1 (RefSeq);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Dynamin central domain (IPR000375),Dynamin%2C GTPase domain (IPR001401),Dynamin GTPase effector (IPR003130),Dynamin%2C GTPase region%2C conserved site (IPR019762),GTPase effector domain%2C GED (IPR020850),Dynamin (IPR022812);NIAS_FLcDNA=J033072A13;Oryzabase=21600;Expression=AK073965;TENOR=Os01t0920400-01;KEGG=Os01t0920400-01 (EC:3.6.5.5)
Chr01	irgsp1_rep	five_prime_UTR	40190702	40190881	.	-	.	Parent=Os01t0920400-01
Chr01	irgsp1_rep	CDS	40190315	40190701	.	-	0	Parent=Os01t0920400-01
Chr01	irgsp1_rep	CDS	40189089	40189371	.	-	0	Parent=Os01t0920400-01
Chr01	irgsp1_rep	CDS	40188976	40189004	.	-	2	Parent=Os01t0920400-01
Chr01	irgsp1_rep	CDS	40188775	40188876	.	-	0	Parent=Os01t0920400-01
Chr01	irgsp1_rep	CDS	40188415	40188483	.	-	0	Parent=Os01t0920400-01
Chr01	irgsp1_rep	CDS	40188271	40188330	.	-	0	Parent=Os01t0920400-01
Chr01	irgsp1_rep	CDS	40188065	40188178	.	-	0	Parent=Os01t0920400-01
Chr01	irgsp1_rep	CDS	40187828	40187876	.	-	0	Parent=Os01t0920400-01
Chr01	irgsp1_rep	CDS	40187269	40187378	.	-	2	Parent=Os01t0920400-01
Chr01	irgsp1_rep	CDS	40187083	40187175	.	-	0	Parent=Os01t0920400-01
Chr01	irgsp1_rep	CDS	40186895	40186987	.	-	0	Parent=Os01t0920400-01
Chr01	irgsp1_rep	CDS	40186556	40186693	.	-	0	Parent=Os01t0920400-01
Chr01	irgsp1_rep	CDS	40186156	40186263	.	-	0	Parent=Os01t0920400-01
Chr01	irgsp1_rep	CDS	40185391	40185495	.	-	0	Parent=Os01t0920400-01
Chr01	irgsp1_rep	CDS	40185250	40185292	.	-	0	Parent=Os01t0920400-01
Chr01	irgsp1_rep	CDS	40184925	40185082	.	-	2	Parent=Os01t0920400-01
Chr01	irgsp1_rep	CDS	40184692	40184838	.	-	0	Parent=Os01t0920400-01
Chr01	irgsp1_rep	CDS	40183770	40183822	.	-	0	Parent=Os01t0920400-01
Chr01	irgsp1_rep	CDS	40183556	40183655	.	-	1	Parent=Os01t0920400-01
Chr01	irgsp1_rep	CDS	40183245	40183460	.	-	0	Parent=Os01t0920400-01
Chr01	irgsp1_rep	three_prime_UTR	40182781	40183244	.	-	.	Parent=Os01t0920400-01
Chr01	irgsp1_rep	mRNA	40182781	40183187	.	-	.	ID=Os01t0920400-02;Name=Os01t0920400-02;Locus_id=Os01g0920400;Oryzabase Gene Symbol Synonym(s)=OsDRP3A%2C DRP3A;Oryzabase Gene Name Synonym(s)=dynamin-related protein 3A;Note=Hypothetical conserved gene.;Transcript_evidence=AK063897 (DDBJ%2C Best hit);ORF_evidence=B8A8F0 (UniProt);NIAS_FLcDNA=001-122-H01;Oryzabase=21600;Expression=AK063897;TENOR=Os01t0920400-02;KEGG=Os01t0920400-02
Chr01	irgsp1_rep	five_prime_UTR	40183186	40183187	.	-	.	Parent=Os01t0920400-02
Chr01	irgsp1_rep	CDS	40183129	40183185	.	-	0	Parent=Os01t0920400-02
Chr01	irgsp1_rep	three_prime_UTR	40182781	40183128	.	-	.	Parent=Os01t0920400-02
Chr01	irgsp1_rep	mRNA	40193003	40193251	.	+	.	ID=Os01t0920450-00;Name=Os01t0920450-00;Locus_id=Os01g0920450;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9EVX1 (UniProt);TENOR=Os01t0920450-00
Chr01	irgsp1_rep	CDS	40193003	40193251	.	+	0	Parent=Os01t0920450-00
Chr01	irgsp1_rep	mRNA	40194213	40194941	.	+	.	ID=Os01t0920500-01;Name=Os01t0920500-01;Locus_id=Os01g0920500;Note=Nucleotide-diphospho-sugar transferase domain containing protein.;Transcript_evidence=AK107508 (DDBJ%2C Best hit);ORF_evidence=B9EVX1 (UniProt);InterPro=Nucleotide-diphospho-sugar transferase (IPR005069);NIAS_FLcDNA=002-129-E08;TENOR=Os01t0920500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	40194213	40194214	.	+	.	Parent=Os01t0920500-01
Chr01	irgsp1_rep	CDS	40194215	40194721	.	+	0	Parent=Os01t0920500-01
Chr01	irgsp1_rep	three_prime_UTR	40194722	40194941	.	+	.	Parent=Os01t0920500-01
Chr01	irgsp1_rep	mRNA	40190285	40203691	.	+	.	ID=Os01t0920700-00;Name=Os01t0920700-00;Locus_id=Os01g0920700;Note=Nucleotide-diphospho-sugar transferase domain containing protein.;Transcript_evidence=AK331553 (DDBJ);ORF_evidence=NP_001045222.1 (RefSeq);InterPro=Nucleotide-diphospho-sugar transferase (IPR005069);TENOR=Os01t0920700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	40190285	40190713	.	+	0	Parent=Os01t0920700-00
Chr01	irgsp1_rep	CDS	40193370	40193729	.	+	0	Parent=Os01t0920700-00
Chr01	irgsp1_rep	CDS	40203161	40203691	.	+	0	Parent=Os01t0920700-00
Chr01	irgsp1_rep	mRNA	40205112	40206882	.	+	.	ID=Os01t0920800-00;Name=Os01t0920800-00;Locus_id=Os01g0920800;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3A103 (UniProt);TENOR=Os01t0920800-00
Chr01	irgsp1_rep	CDS	40205112	40205366	.	+	0	Parent=Os01t0920800-00
Chr01	irgsp1_rep	CDS	40206355	40206882	.	+	0	Parent=Os01t0920800-00
Chr01	irgsp1_rep	mRNA	40211197	40213481	.	+	.	ID=Os01t0921000-01;Name=Os01t0921000-01;Locus_id=Os01g0921000;Note=Nucleotide-diphospho-sugar transferase domain containing protein.;Transcript_evidence=AK071688 (DDBJ%2C Best hit);ORF_evidence=B8A8F3 (UniProt);InterPro=Nucleotide-diphospho-sugar transferase (IPR005069);NIAS_FLcDNA=J023113H16;Expression=AK071688;TENOR=Os01t0921000-01;KEGG=Os01t0921000-01
Chr01	irgsp1_rep	five_prime_UTR	40211197	40211223	.	+	.	Parent=Os01t0921000-01
Chr01	irgsp1_rep	CDS	40211224	40211463	.	+	0	Parent=Os01t0921000-01
Chr01	irgsp1_rep	CDS	40211941	40212303	.	+	0	Parent=Os01t0921000-01
Chr01	irgsp1_rep	CDS	40212779	40213294	.	+	0	Parent=Os01t0921000-01
Chr01	irgsp1_rep	three_prime_UTR	40213295	40213481	.	+	.	Parent=Os01t0921000-01
Chr01	irgsp1_rep	mRNA	40215071	40216944	.	+	.	ID=Os01t0921100-01;Name=Os01t0921100-01;Locus_id=Os01g0921100;Note=Hypothetical conserved gene.;Transcript_evidence=AK243195 (DDBJ%2C Best hit);ORF_evidence=B8A8F4 (UniProt);InterPro=Nucleotide-diphospho-sugar transferase (IPR005069);NIAS_FLcDNA=J100040A04;TENOR=Os01t0921100-01;KEGG=Os01t0921100-01
Chr01	irgsp1_rep	five_prime_UTR	40215071	40215082	.	+	.	Parent=Os01t0921100-01
Chr01	irgsp1_rep	CDS	40215083	40215328	.	+	0	Parent=Os01t0921100-01
Chr01	irgsp1_rep	CDS	40215418	40215797	.	+	0	Parent=Os01t0921100-01
Chr01	irgsp1_rep	CDS	40215910	40216417	.	+	1	Parent=Os01t0921100-01
Chr01	irgsp1_rep	three_prime_UTR	40216418	40216944	.	+	.	Parent=Os01t0921100-01
Chr01	irgsp1_rep	mRNA	40220895	40229111	.	+	.	ID=Os01t0921200-01;Name=Os01t0921200-01;Locus_id=Os01g0921200;RAP-DB Gene Symbol Synonym(s)=OsMOGS;RAP-DB Gene Name Synonym(s)=mannosyl-oligosaccharide glucosidase;Oryzabase Gene Symbol Synonym(s)=OsMOGS;Oryzabase Gene Name Synonym(s)=mannosyl-oligosaccharide glucosidase;Note=Mannosyl-oligosaccharide glucosidase%2C N-glycan formation%2C Auxin-mediated root development;Transcript_evidence=AK289185;ORF_evidence=Inferred from literature;GO=Biological Process: oligosaccharide metabolic process (GO:0009311),Molecular Function: catalytic activity (GO:0003824),Molecular Function: mannosyl-oligosaccharide glucosidase activity (GO:0004573);InterPro=Glycoside hydrolase%2C family 63 (IPR004888),Six-hairpin glycosidase-like (IPR008928);NIAS_FLcDNA=J100033P10;Manual Curation=January 27%2C 2015;Literature_PMID=24597623;Oryzabase=15661;TENOR=Os01t0921200-01;KEGG=Os01t0921200-01 (EC:3.2.1.106)
Chr01	irgsp1_rep	five_prime_UTR	40220895	40220953	.	+	.	Parent=Os01t0921200-01
Chr01	irgsp1_rep	CDS	40220954	40221304	.	+	0	Parent=Os01t0921200-01
Chr01	irgsp1_rep	CDS	40221761	40221834	.	+	0	Parent=Os01t0921200-01
Chr01	irgsp1_rep	CDS	40222185	40222436	.	+	1	Parent=Os01t0921200-01
Chr01	irgsp1_rep	CDS	40222668	40222842	.	+	1	Parent=Os01t0921200-01
Chr01	irgsp1_rep	CDS	40222984	40223070	.	+	0	Parent=Os01t0921200-01
Chr01	irgsp1_rep	CDS	40223186	40223254	.	+	0	Parent=Os01t0921200-01
Chr01	irgsp1_rep	CDS	40223379	40223475	.	+	0	Parent=Os01t0921200-01
Chr01	irgsp1_rep	CDS	40223751	40223833	.	+	2	Parent=Os01t0921200-01
Chr01	irgsp1_rep	CDS	40224114	40224221	.	+	0	Parent=Os01t0921200-01
Chr01	irgsp1_rep	CDS	40224413	40224534	.	+	0	Parent=Os01t0921200-01
Chr01	irgsp1_rep	CDS	40224662	40224769	.	+	1	Parent=Os01t0921200-01
Chr01	irgsp1_rep	CDS	40224862	40224935	.	+	1	Parent=Os01t0921200-01
Chr01	irgsp1_rep	CDS	40225233	40225358	.	+	2	Parent=Os01t0921200-01
Chr01	irgsp1_rep	CDS	40226396	40226463	.	+	2	Parent=Os01t0921200-01
Chr01	irgsp1_rep	CDS	40226671	40226820	.	+	0	Parent=Os01t0921200-01
Chr01	irgsp1_rep	CDS	40226905	40226955	.	+	0	Parent=Os01t0921200-01
Chr01	irgsp1_rep	CDS	40227419	40227475	.	+	0	Parent=Os01t0921200-01
Chr01	irgsp1_rep	CDS	40227565	40227711	.	+	0	Parent=Os01t0921200-01
Chr01	irgsp1_rep	CDS	40227805	40227896	.	+	0	Parent=Os01t0921200-01
Chr01	irgsp1_rep	CDS	40228257	40228366	.	+	1	Parent=Os01t0921200-01
Chr01	irgsp1_rep	CDS	40228469	40228532	.	+	2	Parent=Os01t0921200-01
Chr01	irgsp1_rep	CDS	40228624	40228777	.	+	1	Parent=Os01t0921200-01
Chr01	irgsp1_rep	three_prime_UTR	40228778	40229111	.	+	.	Parent=Os01t0921200-01
Chr01	irgsp1_rep	mRNA	40230297	40233212	.	+	.	ID=Os01t0921300-01;Name=Os01t0921300-01;Locus_id=Os01g0921300;Note=Exostosin-like family protein.;Transcript_evidence=AK119614 (DDBJ%2C Best hit),AK106015 (DDBJ%2C Best hit);ORF_evidence=NP_001152546.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);NIAS_FLcDNA=002-117-G05,001-206-B06;TENOR=Os01t0921300-01
Chr01	irgsp1_rep	five_prime_UTR	40230297	40230385	.	+	.	Parent=Os01t0921300-01
Chr01	irgsp1_rep	CDS	40230386	40230889	.	+	0	Parent=Os01t0921300-01
Chr01	irgsp1_rep	CDS	40231634	40231930	.	+	0	Parent=Os01t0921300-01
Chr01	irgsp1_rep	CDS	40232085	40232180	.	+	0	Parent=Os01t0921300-01
Chr01	irgsp1_rep	CDS	40232336	40232752	.	+	0	Parent=Os01t0921300-01
Chr01	irgsp1_rep	three_prime_UTR	40232753	40233212	.	+	.	Parent=Os01t0921300-01
Chr01	irgsp1_rep	mRNA	40235190	40238278	.	+	.	ID=Os01t0921400-01;Name=Os01t0921400-01;Locus_id=Os01g0921400;CGSNL Gene Symbol=EXO70F1;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN F1;Oryzabase Gene Symbol Synonym(s)=OsEXO70F1%2C OsExo70F1%2C OrysaF1_Exo70;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein F1;Note=Conserved hypothetical protein.;Transcript_evidence=AK099844 (DDBJ%2C Best hit);ORF_evidence=Q8RZJ0 (UniProt);NIAS_FLcDNA=J013109B06;Oryzabase=20331;TENOR=Os01t0921400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	40235190	40235248	.	+	.	Parent=Os01t0921400-01
Chr01	irgsp1_rep	CDS	40235249	40235587	.	+	0	Parent=Os01t0921400-01
Chr01	irgsp1_rep	CDS	40235635	40235784	.	+	0	Parent=Os01t0921400-01
Chr01	irgsp1_rep	three_prime_UTR	40235785	40237215	.	+	.	Parent=Os01t0921400-01
Chr01	irgsp1_rep	three_prime_UTR	40237917	40238278	.	+	.	Parent=Os01t0921400-01
Chr01	irgsp1_rep	mRNA	40235291	40236879	.	-	.	ID=Os01t0921450-00;Name=Os01t0921450-00;Locus_id=Os01g0921450;Note=Hypothetical protein.;Transcript_evidence=AK374499 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0921450-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	40236394	40236879	.	-	.	Parent=Os01t0921450-00
Chr01	irgsp1_rep	CDS	40235971	40236393	.	-	0	Parent=Os01t0921450-00
Chr01	irgsp1_rep	three_prime_UTR	40235885	40235970	.	-	.	Parent=Os01t0921450-00
Chr01	irgsp1_rep	three_prime_UTR	40235291	40235749	.	-	.	Parent=Os01t0921450-00
Chr01	irgsp1_rep	mRNA	40238689	40240454	.	-	.	ID=Os01t0921500-01;Name=Os01t0921500-01;Locus_id=Os01g0921500;Oryzabase Gene Symbol Synonym(s)=OsCBSCBS2;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSCBS2%2C CBS domain containing protein OsCBSCBS2;Note=Similar to SNF1-related protein kinase regulatory gamma subunit 1 (AKIN gamma1) (AKING1).;Transcript_evidence=AK105517 (DDBJ%2C Best hit);ORF_evidence=Q01LJ2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein binding (GO:0005515);InterPro=Cystathionine beta-synthase%2C core (IPR000644),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=001-127-F06;Oryzabase=10347;Expression=AK105517;TENOR=Os01t0921500-01;KEGG=Os01t0921500-01
Chr01	irgsp1_rep	five_prime_UTR	40240444	40240454	.	-	.	Parent=Os01t0921500-01
Chr01	irgsp1_rep	CDS	40239416	40240443	.	-	0	Parent=Os01t0921500-01
Chr01	irgsp1_rep	CDS	40238843	40239122	.	-	1	Parent=Os01t0921500-01
Chr01	irgsp1_rep	three_prime_UTR	40238689	40238842	.	-	.	Parent=Os01t0921500-01
Chr01	irgsp1_rep	mRNA	40240142	40240678	.	+	.	ID=Os01t0921550-00;Name=Os01t0921550-00;Locus_id=Os01g0921550;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os01t0921550-00
Chr01	irgsp1_rep	CDS	40240142	40240678	.	+	0	Parent=Os01t0921550-00
Chr01	irgsp1_rep	mRNA	40240810	40244636	.	+	.	ID=Os01t0921600-01;Name=Os01t0921600-01;Locus_id=Os01g0921600;Note=Similar to Mitochondrial import receptor subunit TOM20 (Translocase of outer membrane 20 kDa subunit).;Transcript_evidence=AK071344 (DDBJ%2C Best hit);ORF_evidence=NP_001149254.1 (RefSeq);GO=Biological Process: protein import into mitochondrial outer membrane (GO:0045040),Cellular Component: mitochondrial outer membrane translocase complex (GO:0005742),Molecular Function: binding (GO:0005488);InterPro=Plant specific mitochondrial import receptor subunit TOM20 (IPR010547),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J023091E24;Expression=AK071344;TENOR=Os01t0921600-01;KEGG=Os01t0921600-01
Chr01	irgsp1_rep	five_prime_UTR	40240810	40240945	.	+	.	Parent=Os01t0921600-01
Chr01	irgsp1_rep	CDS	40240946	40241047	.	+	0	Parent=Os01t0921600-01
Chr01	irgsp1_rep	CDS	40241195	40241273	.	+	0	Parent=Os01t0921600-01
Chr01	irgsp1_rep	CDS	40242348	40242517	.	+	2	Parent=Os01t0921600-01
Chr01	irgsp1_rep	CDS	40242698	40242745	.	+	0	Parent=Os01t0921600-01
Chr01	irgsp1_rep	CDS	40243033	40243113	.	+	0	Parent=Os01t0921600-01
Chr01	irgsp1_rep	CDS	40244140	40244268	.	+	0	Parent=Os01t0921600-01
Chr01	irgsp1_rep	three_prime_UTR	40244269	40244636	.	+	.	Parent=Os01t0921600-01
Chr01	irgsp1_rep	mRNA	40256826	40258624	.	-	.	ID=Os01t0921800-00;Name=Os01t0921800-00;Locus_id=Os01g0921800;Oryzabase Gene Symbol Synonym(s)=OsFbox052%2C OsFbox52%2C Os_F0755;Oryzabase Gene Name Synonym(s)=F-box protein 52;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK334012 (DDBJ);ORF_evidence=XP_002887115.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C MYND-type (IPR002893),Sel1-like (IPR006597),Tetratricopeptide-like helical (IPR011990),F-box domain%2C Skp2-like (IPR022364);Oryzabase=16850;TENOR=Os01t0921800-00;KEGG=Os01t0921800-00
Chr01	irgsp1_rep	five_prime_UTR	40258530	40258624	.	-	.	Parent=Os01t0921800-00
Chr01	irgsp1_rep	CDS	40258264	40258529	.	-	0	Parent=Os01t0921800-00
Chr01	irgsp1_rep	CDS	40257862	40258024	.	-	1	Parent=Os01t0921800-00
Chr01	irgsp1_rep	CDS	40257026	40257763	.	-	0	Parent=Os01t0921800-00
Chr01	irgsp1_rep	three_prime_UTR	40256826	40257025	.	-	.	Parent=Os01t0921800-00
Chr01	irgsp1_rep	mRNA	40275511	40278116	.	-	.	ID=Os01t0922000-01;Name=Os01t0922000-01;Locus_id=Os01g0922000;Note=Hypothetical protein.;Transcript_evidence=AK073034 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023145D09;Expression=AK073034;TENOR=Os01t0922000-01;KEGG=Os01t0922000-01
Chr01	irgsp1_rep	five_prime_UTR	40276448	40278116	.	-	.	Parent=Os01t0922000-01
Chr01	irgsp1_rep	CDS	40276142	40276447	.	-	0	Parent=Os01t0922000-01
Chr01	irgsp1_rep	three_prime_UTR	40275511	40276141	.	-	.	Parent=Os01t0922000-01
Chr01	irgsp1_rep	mRNA	40285434	40287011	.	-	.	ID=Os01t0922100-01;Name=Os01t0922100-01;Locus_id=Os01g0922100;CGSNL Gene Symbol=RBG1-L;CGSNL Gene Name=RBG1-LIKE;Oryzabase Gene Symbol Synonym(s)=OsRBG1-L;Oryzabase Gene Name Synonym(s)=RBG1-like;Note=Conserved hypothetical protein.;Transcript_evidence=AK110737 (DDBJ%2C Best hit);ORF_evidence=A2WYH3 (UniProt);NIAS_FLcDNA=002-170-F04;Oryzabase=23455;Expression=AK110737;TENOR=Os01t0922100-01;KEGG=Os01t0922100-01
Chr01	irgsp1_rep	five_prime_UTR	40286873	40287011	.	-	.	Parent=Os01t0922100-01
Chr01	irgsp1_rep	CDS	40285616	40286872	.	-	0	Parent=Os01t0922100-01
Chr01	irgsp1_rep	three_prime_UTR	40285434	40285615	.	-	.	Parent=Os01t0922100-01
Chr01	irgsp1_rep	mRNA	40285616	40287041	.	+	.	ID=Os01t0922350-00;Name=Os01t0922350-00;Locus_id=Os01g0922350;Note=Hypothetical protein.;Transcript_evidence=AK373674 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0922350-00
Chr01	irgsp1_rep	five_prime_UTR	40285616	40286012	.	+	.	Parent=Os01t0922350-00
Chr01	irgsp1_rep	CDS	40286013	40286915	.	+	0	Parent=Os01t0922350-00
Chr01	irgsp1_rep	three_prime_UTR	40286916	40287041	.	+	.	Parent=Os01t0922350-00
Chr01	irgsp1_rep	mRNA	40332266	40335625	.	+	.	ID=Os01t0922600-01;Name=Os01t0922600-01;Locus_id=Os01g0922600;CGSNL Gene Symbol=SPL2;CGSNL Gene Name=RICE SQUAMOSA PROMOTER-BINDING-LIKE 2;Oryzabase Gene Symbol Synonym(s)=OsSPL2;Oryzabase Gene Name Synonym(s)=Squamosa promoter-binding-like protein 2;Note=Similar to SBP-domain protein 4.;Transcript_evidence=AK062581 (DDBJ%2C Best hit);ORF_evidence=Q0JGI1 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Transcription factor%2C SBP-box (IPR004333);NIAS_FLcDNA=001-100-B10;Oryzabase=6888;Expression=AK062581;TENOR=Os01t0922600-01;KEGG=Os01t0922600-01
Chr01	irgsp1_rep	CDS	40332266	40332378	.	+	0	Parent=Os01t0922600-01
Chr01	irgsp1_rep	CDS	40333562	40333692	.	+	1	Parent=Os01t0922600-01
Chr01	irgsp1_rep	CDS	40334513	40335204	.	+	2	Parent=Os01t0922600-01
Chr01	irgsp1_rep	three_prime_UTR	40335205	40335625	.	+	.	Parent=Os01t0922600-01
Chr01	irgsp1_rep	mRNA	40336798	40337314	.	-	.	ID=Os01t0922700-01;Name=Os01t0922700-01;Locus_id=Os01g0922700;Note=Conserved hypothetical protein.;Transcript_evidence=AK287528 (DDBJ%2C Best hit);ORF_evidence=NP_001172712.1 (RefSeq);NIAS_FLcDNA=J053101P11;TENOR=Os01t0922700-01;KEGG=Os01t0922700-01
Chr01	irgsp1_rep	five_prime_UTR	40337249	40337314	.	-	.	Parent=Os01t0922700-01
Chr01	irgsp1_rep	CDS	40336994	40337248	.	-	0	Parent=Os01t0922700-01
Chr01	irgsp1_rep	three_prime_UTR	40336798	40336993	.	-	.	Parent=Os01t0922700-01
Chr01	irgsp1_rep	mRNA	40344374	40364362	.	+	.	ID=Os01t0922800-01;Name=Os01t0922800-01;Locus_id=Os01g0922800;RAP-DB Gene Symbol Synonym(s)=MADS51%2C OsMADS51%2C OsMADS65%2C MADS65;RAP-DB Gene Name Synonym(s)=MADS BOX GENE 51%2C MADS box gene51;CGSNL Gene Symbol=MADS51;CGSNL Gene Name=MADS BOX GENE 51;Oryzabase Gene Symbol Synonym(s)=OsMADS51%2C OsMADS65%2C MADS65%2C qHd1%2C DLN36%2C OsDLN36;Oryzabase Gene Name Synonym(s)=MADS box gene51%2C DLN repressor 36%2C DLN motif protein 36;Note=MADS-box transcription factor%2C Short-day flowering promoter;Transcript_evidence=AB003327,AK066160;ORF_evidence=Q9XJ61;GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box (IPR002100);NIAS_FLcDNA=J013055I02;Manual Curation=October 22%2C 2009;Literature_PMID=10382970,17951465;Oryzabase=7431;Expression=AK066160;TENOR=Os01t0922800-01;KEGG=Os01t0922800-01
Chr01	irgsp1_rep	five_prime_UTR	40344374	40344509	.	+	.	Parent=Os01t0922800-01
Chr01	irgsp1_rep	CDS	40344510	40344694	.	+	0	Parent=Os01t0922800-01
Chr01	irgsp1_rep	CDS	40362260	40362341	.	+	1	Parent=Os01t0922800-01
Chr01	irgsp1_rep	CDS	40362754	40362800	.	+	0	Parent=Os01t0922800-01
Chr01	irgsp1_rep	CDS	40362888	40362984	.	+	1	Parent=Os01t0922800-01
Chr01	irgsp1_rep	CDS	40363859	40363942	.	+	0	Parent=Os01t0922800-01
Chr01	irgsp1_rep	three_prime_UTR	40363943	40364362	.	+	.	Parent=Os01t0922800-01
Chr01	irgsp1_rep	mRNA	40371950	40372684	.	+	.	ID=Os01t0923000-01;Name=Os01t0923000-01;Locus_id=Os01g0923000;Note=Conserved hypothetical protein.;Transcript_evidence=AK070795 (DDBJ%2C Best hit);ORF_evidence=A2WYI0 (UniProt);NIAS_FLcDNA=J023064M05;Expression=AK070795;TENOR=Os01t0923000-01;KEGG=Os01t0923000-01
Chr01	irgsp1_rep	five_prime_UTR	40371950	40372025	.	+	.	Parent=Os01t0923000-01
Chr01	irgsp1_rep	CDS	40372026	40372421	.	+	0	Parent=Os01t0923000-01
Chr01	irgsp1_rep	three_prime_UTR	40372422	40372684	.	+	.	Parent=Os01t0923000-01
Chr01	irgsp1_rep	mRNA	40379167	40379690	.	+	.	ID=Os01t0923200-01;Name=Os01t0923200-01;Locus_id=Os01g0923200;Note=Similar to AT.I.24-6 protein (Fragment).;Transcript_evidence=AK060288 (DDBJ%2C Best hit);ORF_evidence=Q96310 (UniProt);InterPro=Protein of unknown function DUF3339 (IPR021775);NIAS_FLcDNA=001-006-C11;Expression=AK060288;TENOR=Os01t0923200-01;KEGG=Os01t0923200-01
Chr01	irgsp1_rep	five_prime_UTR	40379167	40379244	.	+	.	Parent=Os01t0923200-01
Chr01	irgsp1_rep	CDS	40379245	40379472	.	+	0	Parent=Os01t0923200-01
Chr01	irgsp1_rep	three_prime_UTR	40379473	40379690	.	+	.	Parent=Os01t0923200-01
Chr01	irgsp1_rep	mRNA	40385339	40389177	.	+	.	ID=Os01t0923300-01;Name=Os01t0923300-01;Locus_id=Os01g0923300;Oryzabase Gene Symbol Synonym(s)=OsCBSCBSPB1;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSCBSPB1%2C CBS domain containing protein OsCBSCBSPB1;Note=Cystathionine beta-synthase%2C core domain containing protein.;Transcript_evidence=AK067520 (DDBJ%2C Best hit);ORF_evidence=A3A121 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein binding (GO:0005515);InterPro=Cystathionine beta-synthase%2C core (IPR000644),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J013110E12;Oryzabase=10351;Expression=AK067520;TENOR=Os01t0923300-01;KEGG=Os01t0923300-01
Chr01	irgsp1_rep	five_prime_UTR	40385339	40385482	.	+	.	Parent=Os01t0923300-01
Chr01	irgsp1_rep	CDS	40385483	40385643	.	+	0	Parent=Os01t0923300-01
Chr01	irgsp1_rep	CDS	40386109	40386277	.	+	1	Parent=Os01t0923300-01
Chr01	irgsp1_rep	CDS	40386367	40386499	.	+	0	Parent=Os01t0923300-01
Chr01	irgsp1_rep	CDS	40386582	40386752	.	+	2	Parent=Os01t0923300-01
Chr01	irgsp1_rep	CDS	40386936	40387018	.	+	2	Parent=Os01t0923300-01
Chr01	irgsp1_rep	three_prime_UTR	40387118	40387231	.	+	.	Parent=Os01t0923300-01
Chr01	irgsp1_rep	three_prime_UTR	40387305	40387371	.	+	.	Parent=Os01t0923300-01
Chr01	irgsp1_rep	three_prime_UTR	40387460	40387565	.	+	.	Parent=Os01t0923300-01
Chr01	irgsp1_rep	three_prime_UTR	40387650	40387708	.	+	.	Parent=Os01t0923300-01
Chr01	irgsp1_rep	three_prime_UTR	40387899	40388008	.	+	.	Parent=Os01t0923300-01
Chr01	irgsp1_rep	three_prime_UTR	40388096	40388229	.	+	.	Parent=Os01t0923300-01
Chr01	irgsp1_rep	three_prime_UTR	40388358	40388443	.	+	.	Parent=Os01t0923300-01
Chr01	irgsp1_rep	three_prime_UTR	40388571	40388660	.	+	.	Parent=Os01t0923300-01
Chr01	irgsp1_rep	three_prime_UTR	40388745	40389177	.	+	.	Parent=Os01t0923300-01
Chr01	irgsp1_rep	mRNA	40390934	40393093	.	+	.	ID=Os01t0923400-01;Name=Os01t0923400-01;Locus_id=Os01g0923400;Note=Hypothetical conserved gene.;Transcript_evidence=AK068698 (DDBJ%2C Best hit);ORF_evidence=B9FAB2 (UniProt);NIAS_FLcDNA=J013160L07;Expression=AK068698;TENOR=Os01t0923400-01;KEGG=Os01t0923400-01
Chr01	irgsp1_rep	five_prime_UTR	40390934	40391101	.	+	.	Parent=Os01t0923400-01
Chr01	irgsp1_rep	CDS	40391102	40391305	.	+	0	Parent=Os01t0923400-01
Chr01	irgsp1_rep	three_prime_UTR	40391306	40393093	.	+	.	Parent=Os01t0923400-01
Chr01	irgsp1_rep	mRNA	40397315	40402594	.	+	.	ID=Os01t0923600-01;Name=Os01t0923600-01;Locus_id=Os01g0923600;CGSNL Gene Symbol=CAMTA3;CGSNL Gene Name=CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR;Oryzabase Gene Symbol Synonym(s)=OsCAMTA%2C qSCT1;Oryzabase Gene Name Synonym(s)=CaM-binding transcription factor homolog%2C OsCBT homolog%2C CBT homolog%2C QTL for seedling cold tolerance on Chromosome 1%2C calmodulin-binding transcription activator;Note=Hypothetical conserved gene.;Transcript_evidence=AK122110 (DDBJ%2C Best hit);ORF_evidence=B8A8F8 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein binding (GO:0005515),Molecular Function: calmodulin binding (GO:0005516);InterPro=IQ motif%2C EF-hand binding site (IPR000048),Ankyrin repeat (IPR002110),CG-1 (IPR005559),Immunoglobulin E-set (IPR014756),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J033127H20;Oryzabase=19599;TENOR=Os01t0923600-01
Chr01	irgsp1_rep	five_prime_UTR	40397315	40397521	.	+	.	Parent=Os01t0923600-01
Chr01	irgsp1_rep	CDS	40397522	40397537	.	+	0	Parent=Os01t0923600-01
Chr01	irgsp1_rep	CDS	40398102	40398227	.	+	2	Parent=Os01t0923600-01
Chr01	irgsp1_rep	CDS	40398334	40398449	.	+	2	Parent=Os01t0923600-01
Chr01	irgsp1_rep	CDS	40398748	40398836	.	+	0	Parent=Os01t0923600-01
Chr01	irgsp1_rep	CDS	40399500	40399545	.	+	1	Parent=Os01t0923600-01
Chr01	irgsp1_rep	CDS	40399889	40400357	.	+	0	Parent=Os01t0923600-01
Chr01	irgsp1_rep	CDS	40400466	40400593	.	+	2	Parent=Os01t0923600-01
Chr01	irgsp1_rep	CDS	40400823	40401526	.	+	0	Parent=Os01t0923600-01
Chr01	irgsp1_rep	CDS	40401646	40402186	.	+	1	Parent=Os01t0923600-01
Chr01	irgsp1_rep	CDS	40402294	40402594	.	+	0	Parent=Os01t0923600-01
Chr01	irgsp1_rep	mRNA	40397335	40403249	.	+	.	ID=Os01t0923600-02;Name=Os01t0923600-02;Locus_id=Os01g0923600;CGSNL Gene Symbol=CAMTA3;CGSNL Gene Name=CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR;Oryzabase Gene Symbol Synonym(s)=OsCAMTA%2C qSCT1;Oryzabase Gene Name Synonym(s)=CaM-binding transcription factor homolog%2C OsCBT homolog%2C CBT homolog%2C QTL for seedling cold tolerance on Chromosome 1%2C calmodulin-binding transcription activator;Note=Ankyrin domain containing protein.;Transcript_evidence=AK068932 (DDBJ%2C Best hit);ORF_evidence=B8A8F8 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein binding (GO:0005515),Molecular Function: calmodulin binding (GO:0005516);InterPro=IQ motif%2C EF-hand binding site (IPR000048),Ankyrin repeat (IPR002110),CG-1 (IPR005559),Immunoglobulin-like fold (IPR013783),Immunoglobulin E-set (IPR014756),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J023002D02;Oryzabase=19599;Expression=AK068932;TENOR=Os01t0923600-02;KEGG=Os01t0923600-02
Chr01	irgsp1_rep	five_prime_UTR	40397335	40397521	.	+	.	Parent=Os01t0923600-02
Chr01	irgsp1_rep	CDS	40397522	40397537	.	+	0	Parent=Os01t0923600-02
Chr01	irgsp1_rep	CDS	40398102	40398227	.	+	2	Parent=Os01t0923600-02
Chr01	irgsp1_rep	CDS	40398334	40398449	.	+	2	Parent=Os01t0923600-02
Chr01	irgsp1_rep	CDS	40398748	40398836	.	+	0	Parent=Os01t0923600-02
Chr01	irgsp1_rep	CDS	40399500	40399545	.	+	1	Parent=Os01t0923600-02
Chr01	irgsp1_rep	CDS	40399889	40400357	.	+	0	Parent=Os01t0923600-02
Chr01	irgsp1_rep	CDS	40400466	40400593	.	+	2	Parent=Os01t0923600-02
Chr01	irgsp1_rep	CDS	40400823	40401526	.	+	0	Parent=Os01t0923600-02
Chr01	irgsp1_rep	CDS	40401646	40402186	.	+	1	Parent=Os01t0923600-02
Chr01	irgsp1_rep	CDS	40402294	40402593	.	+	0	Parent=Os01t0923600-02
Chr01	irgsp1_rep	CDS	40402808	40402909	.	+	0	Parent=Os01t0923600-02
Chr01	irgsp1_rep	three_prime_UTR	40402910	40403249	.	+	.	Parent=Os01t0923600-02
Chr01	irgsp1_rep	mRNA	40401173	40403166	.	+	.	ID=Os01t0923600-03;Name=Os01t0923600-03;Locus_id=Os01g0923600;CGSNL Gene Symbol=CAMTA3;CGSNL Gene Name=CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR;Oryzabase Gene Symbol Synonym(s)=OsCAMTA%2C qSCT1;Oryzabase Gene Name Synonym(s)=CaM-binding transcription factor homolog%2C OsCBT homolog%2C CBT homolog%2C QTL for seedling cold tolerance on Chromosome 1%2C calmodulin-binding transcription activator;Note=Hypothetical conserved gene.;Transcript_evidence=AK059687 (DDBJ%2C Best hit);ORF_evidence=B8A8F8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048),Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=001-032-A08;Oryzabase=19599;Expression=AK059687;TENOR=Os01t0923600-03;KEGG=Os01t0923600-03
Chr01	irgsp1_rep	five_prime_UTR	40401173	40401173	.	+	.	Parent=Os01t0923600-03
Chr01	irgsp1_rep	CDS	40401174	40401526	.	+	0	Parent=Os01t0923600-03
Chr01	irgsp1_rep	CDS	40401646	40402186	.	+	1	Parent=Os01t0923600-03
Chr01	irgsp1_rep	CDS	40402294	40402593	.	+	0	Parent=Os01t0923600-03
Chr01	irgsp1_rep	CDS	40402761	40402778	.	+	0	Parent=Os01t0923600-03
Chr01	irgsp1_rep	three_prime_UTR	40402779	40403166	.	+	.	Parent=Os01t0923600-03
Chr01	irgsp1_rep	mRNA	40403818	40409611	.	-	.	ID=Os01t0923700-01;Name=Os01t0923700-01;Locus_id=Os01g0923700;CGSNL Gene Symbol=HK3;CGSNL Gene Name=HISTIDINE KINASE 3;Oryzabase Gene Symbol Synonym(s)=OHK2%2C HK%2C OsHK3%2C Ohk%2C Crl2%2C Ohk2%2C OsHK3b;Oryzabase Gene Name Synonym(s)=histidine kinase 3%2C His kinase 3;Note=Similar to Histidine kinase.;Transcript_evidence=AK121135 (DDBJ%2C Best hit);ORF_evidence=A1A696 (UniProt);NIAS_FLcDNA=J023077D19;Oryzabase=8142;TENOR=Os01t0923700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	40409278	40409611	.	-	.	Parent=Os01t0923700-01
Chr01	irgsp1_rep	CDS	40408801	40409277	.	-	0	Parent=Os01t0923700-01
Chr01	irgsp1_rep	three_prime_UTR	40408445	40408800	.	-	.	Parent=Os01t0923700-01
Chr01	irgsp1_rep	three_prime_UTR	40407924	40408090	.	-	.	Parent=Os01t0923700-01
Chr01	irgsp1_rep	three_prime_UTR	40407628	40407834	.	-	.	Parent=Os01t0923700-01
Chr01	irgsp1_rep	three_prime_UTR	40407320	40407506	.	-	.	Parent=Os01t0923700-01
Chr01	irgsp1_rep	three_prime_UTR	40407175	40407226	.	-	.	Parent=Os01t0923700-01
Chr01	irgsp1_rep	three_prime_UTR	40406684	40406913	.	-	.	Parent=Os01t0923700-01
Chr01	irgsp1_rep	three_prime_UTR	40406475	40406573	.	-	.	Parent=Os01t0923700-01
Chr01	irgsp1_rep	three_prime_UTR	40405278	40406386	.	-	.	Parent=Os01t0923700-01
Chr01	irgsp1_rep	three_prime_UTR	40404820	40405175	.	-	.	Parent=Os01t0923700-01
Chr01	irgsp1_rep	three_prime_UTR	40403818	40404289	.	-	.	Parent=Os01t0923700-01
Chr01	irgsp1_rep	mRNA	40403818	40407750	.	-	.	ID=Os01t0923700-02;Name=Os01t0923700-02;Locus_id=Os01g0923700;CGSNL Gene Symbol=HK3;CGSNL Gene Name=HISTIDINE KINASE 3;Oryzabase Gene Symbol Synonym(s)=OHK2%2C HK%2C OsHK3%2C Ohk%2C Crl2%2C Ohk2%2C OsHK3b;Oryzabase Gene Name Synonym(s)=histidine kinase 3%2C His kinase 3;Note=Similar to Histidine kinase.;Transcript_evidence=AK067580 (DDBJ%2C Best hit);ORF_evidence=A1A696 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: signal transduction (GO:0007165),Biological Process: phosphorylation (GO:0016310),Biological Process: peptidyl-histidine phosphorylation (GO:0018106),Cellular Component: membrane (GO:0016020),Molecular Function: two-component sensor activity (GO:0000155),Molecular Function: two-component response regulator activity (GO:0000156),Molecular Function: protein histidine kinase activity (GO:0004673),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),ATPase-like%2C ATP-binding domain (IPR003594),Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain (IPR003661),Signal transduction histidine kinase-related protein%2C C-terminal (IPR004358),Signal transduction histidine kinase%2C core (IPR005467),Signal transduction histidine kinase%2C homodimeric (IPR009082),CheY-like superfamily (IPR011006);NIAS_FLcDNA=J013112K17;Oryzabase=8142;Expression=AK067580;TENOR=Os01t0923700-02;KEGG=Os01t0923700-02
Chr01	irgsp1_rep	five_prime_UTR	40407750	40407750	.	-	.	Parent=Os01t0923700-02
Chr01	irgsp1_rep	CDS	40407628	40407749	.	-	0	Parent=Os01t0923700-02
Chr01	irgsp1_rep	CDS	40407320	40407506	.	-	1	Parent=Os01t0923700-02
Chr01	irgsp1_rep	CDS	40407175	40407226	.	-	0	Parent=Os01t0923700-02
Chr01	irgsp1_rep	CDS	40406684	40406913	.	-	2	Parent=Os01t0923700-02
Chr01	irgsp1_rep	CDS	40406475	40406573	.	-	0	Parent=Os01t0923700-02
Chr01	irgsp1_rep	CDS	40405278	40406386	.	-	0	Parent=Os01t0923700-02
Chr01	irgsp1_rep	CDS	40404917	40405175	.	-	1	Parent=Os01t0923700-02
Chr01	irgsp1_rep	three_prime_UTR	40404820	40404916	.	-	.	Parent=Os01t0923700-02
Chr01	irgsp1_rep	three_prime_UTR	40403818	40404289	.	-	.	Parent=Os01t0923700-02
Chr01	irgsp1_rep	mRNA	40403872	40406333	.	-	.	ID=Os01t0923700-03;Name=Os01t0923700-03;Locus_id=Os01g0923700;CGSNL Gene Symbol=HK3;CGSNL Gene Name=HISTIDINE KINASE 3;Oryzabase Gene Symbol Synonym(s)=OHK2%2C HK%2C OsHK3%2C Ohk%2C Crl2%2C Ohk2%2C OsHK3b;Oryzabase Gene Name Synonym(s)=histidine kinase 3%2C His kinase 3;Note=Similar to Histidine kinase.;Transcript_evidence=AK067355 (DDBJ%2C Best hit);ORF_evidence=A1A696 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: signal transduction (GO:0007165),Biological Process: phosphorylation (GO:0016310),Biological Process: peptidyl-histidine phosphorylation (GO:0018106),Molecular Function: two-component sensor activity (GO:0000155),Molecular Function: two-component response regulator activity (GO:0000156),Molecular Function: protein histidine kinase activity (GO:0004673),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),ATPase-like%2C ATP-binding domain (IPR003594),Signal transduction histidine kinase-related protein%2C C-terminal (IPR004358),Signal transduction histidine kinase%2C core (IPR005467),CheY-like superfamily (IPR011006);NIAS_FLcDNA=J013099L13;Oryzabase=8142;Expression=AK067355;TENOR=Os01t0923700-03;KEGG=Os01t0923700-03
Chr01	irgsp1_rep	five_prime_UTR	40406333	40406333	.	-	.	Parent=Os01t0923700-03
Chr01	irgsp1_rep	CDS	40405278	40406332	.	-	0	Parent=Os01t0923700-03
Chr01	irgsp1_rep	CDS	40404917	40405175	.	-	1	Parent=Os01t0923700-03
Chr01	irgsp1_rep	three_prime_UTR	40404820	40404916	.	-	.	Parent=Os01t0923700-03
Chr01	irgsp1_rep	three_prime_UTR	40403872	40404289	.	-	.	Parent=Os01t0923700-03
Chr01	irgsp1_rep	mRNA	40404917	40409277	.	-	.	ID=Os01t0923700-04;Name=Os01t0923700-04;Locus_id=Os01g0923700;RAP-DB Gene Symbol Synonym(s)=HK3%2C OHK2%2C HK%2C OsHK3%2C Ohk%2C Crl2%2C Ohk2%2C OsHK3b;RAP-DB Gene Name Synonym(s)=HISTIDINE KINASE 3%2C histidine kinase 3%2C His kinase 3;CGSNL Gene Symbol=HK3;CGSNL Gene Name=HISTIDINE KINASE 3;Oryzabase Gene Symbol Synonym(s)=OHK2%2C HK%2C OsHK3%2C Ohk%2C Crl2%2C Ohk2%2C OsHK3b;Oryzabase Gene Name Synonym(s)=histidine kinase 3%2C His kinase 3;Note=Histidine kinase%2C Abscisic acid (ABA)-induced antioxidant defense;Transcript_evidence=BR000244;ORF_evidence=A1A696;GO=Biological Process: phosphorelay signal transduction system (GO:0000160),Biological Process: signal transduction (GO:0007165),Biological Process: phosphorylation (GO:0016310),Molecular Function: phosphorelay sensor kinase activity (GO:0000155),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=CHASE domain (IPR006189),Signal transduction histidine kinase%2C dimerisation/phosphoacceptor domain (IPR003661),Histidine kinase domain (IPR005467),Histidine kinase-like ATPase%2C C-terminal domain (IPR003594),Signal transduction histidine kinase-related protein%2C C-terminal (IPR004358),CheY-like superfamily (IPR011006),Signal transduction response regulator%2C receiver domain (IPR001789);Manual Curation=July 22%2C 2015;Literature_PMID=24912543,16919402;Oryzabase=8142
Chr01	irgsp1_rep	CDS	40408807	40409277	.	-	0	Parent=Os01t0923700-04
Chr01	irgsp1_rep	CDS	40408445	40408735	.	-	0	Parent=Os01t0923700-04
Chr01	irgsp1_rep	CDS	40407924	40408090	.	-	0	Parent=Os01t0923700-04
Chr01	irgsp1_rep	CDS	40407628	40407834	.	-	1	Parent=Os01t0923700-04
Chr01	irgsp1_rep	CDS	40407320	40407506	.	-	1	Parent=Os01t0923700-04
Chr01	irgsp1_rep	CDS	40407175	40407226	.	-	0	Parent=Os01t0923700-04
Chr01	irgsp1_rep	CDS	40406684	40406913	.	-	2	Parent=Os01t0923700-04
Chr01	irgsp1_rep	CDS	40406475	40406573	.	-	0	Parent=Os01t0923700-04
Chr01	irgsp1_rep	CDS	40405278	40406386	.	-	0	Parent=Os01t0923700-04
Chr01	irgsp1_rep	CDS	40404917	40405175	.	-	1	Parent=Os01t0923700-04
Chr01	irgsp1_rep	mRNA	40407357	40408687	.	+	.	ID=Os01t0923750-00;Name=Os01t0923750-00;Locus_id=Os01g0923750;Note=Hypothetical gene.;Transcript_evidence=BT086966 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0923750-00;KEGG=Os01t0923750-00
Chr01	irgsp1_rep	five_prime_UTR	40407357	40407489	.	+	.	Parent=Os01t0923750-00
Chr01	irgsp1_rep	five_prime_UTR	40407613	40407632	.	+	.	Parent=Os01t0923750-00
Chr01	irgsp1_rep	CDS	40407633	40407834	.	+	0	Parent=Os01t0923750-00
Chr01	irgsp1_rep	CDS	40407924	40408024	.	+	2	Parent=Os01t0923750-00
Chr01	irgsp1_rep	three_prime_UTR	40408025	40408075	.	+	.	Parent=Os01t0923750-00
Chr01	irgsp1_rep	three_prime_UTR	40408431	40408687	.	+	.	Parent=Os01t0923750-00
Chr01	irgsp1_rep	mRNA	40438233	40442444	.	+	.	ID=Os01t0923800-01;Name=Os01t0923800-01;Locus_id=Os01g0923800;CGSNL Gene Symbol=DJC14;CGSNL Gene Name=DNAJ DOMAIN PROTEIN C14;Oryzabase Gene Symbol Synonym(s)=OsDjC14;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C14;Note=Similar to Chaperone protein dnaJ.;Transcript_evidence=AK105740 (DDBJ%2C Best hit);ORF_evidence=A2WYI5 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Heat shock protein DnaJ%2C conserved site (IPR018253),Domain of unknown function DUF3444 (IPR024593);NIAS_FLcDNA=001-202-A06;Oryzabase=12171;Expression=AK105740;TENOR=Os01t0923800-01;KEGG=Os01t0923800-01
Chr01	irgsp1_rep	five_prime_UTR	40438233	40438432	.	+	.	Parent=Os01t0923800-01
Chr01	irgsp1_rep	five_prime_UTR	40439791	40439792	.	+	.	Parent=Os01t0923800-01
Chr01	irgsp1_rep	CDS	40439793	40442027	.	+	0	Parent=Os01t0923800-01
Chr01	irgsp1_rep	three_prime_UTR	40442028	40442444	.	+	.	Parent=Os01t0923800-01
Chr01	irgsp1_rep	mRNA	40442923	40446341	.	-	.	ID=Os01t0923900-01;Name=Os01t0923900-01;Locus_id=Os01g0923900;CGSNL Gene Symbol=LC4;CGSNL Gene Name=LEAF INCLINCATION 4;Oryzabase Gene Symbol Synonym(s)=OsFbox053%2C OsFbox53%2C Os_F0309%2C OsLC4;Oryzabase Gene Name Synonym(s)=F-box protein 53%2C LEAF INCLINCATION4;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK241547 (DDBJ%2C Best hit);ORF_evidence=B6U651 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Galactose oxidase/kelch%2C beta-propeller (IPR011043),Kelch-type beta propeller (IPR015915),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J065176G22;Oryzabase=16851;TENOR=Os01t0923900-01;KEGG=Os01t0923900-01
Chr01	irgsp1_rep	five_prime_UTR	40446266	40446341	.	-	.	Parent=Os01t0923900-01
Chr01	irgsp1_rep	CDS	40446176	40446265	.	-	0	Parent=Os01t0923900-01
Chr01	irgsp1_rep	CDS	40443382	40444623	.	-	0	Parent=Os01t0923900-01
Chr01	irgsp1_rep	three_prime_UTR	40442923	40443381	.	-	.	Parent=Os01t0923900-01
Chr01	irgsp1_rep	mRNA	40452896	40453532	.	+	.	ID=Os01t0923950-00;Name=Os01t0923950-00;Locus_id=Os01g0923950;Note=Hypothetical gene.;Transcript_evidence=CT834776 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os01t0923950-00;KEGG=Os01t0923950-00
Chr01	irgsp1_rep	five_prime_UTR	40452896	40452956	.	+	.	Parent=Os01t0923950-00
Chr01	irgsp1_rep	CDS	40452957	40453075	.	+	0	Parent=Os01t0923950-00
Chr01	irgsp1_rep	CDS	40453124	40453253	.	+	1	Parent=Os01t0923950-00
Chr01	irgsp1_rep	three_prime_UTR	40453254	40453532	.	+	.	Parent=Os01t0923950-00
Chr01	irgsp1_rep	mRNA	40453863	40455489	.	+	.	ID=Os01t0924000-01;Name=Os01t0924000-01;Locus_id=Os01g0924000;Note=Similar to Chloroplast 50S ribosomal protein L27 (Fragment).;Transcript_evidence=AK061690 (DDBJ%2C Best hit);ORF_evidence=O65037 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L27 (IPR001684),Ribosomal protein L27%2C conserved site (IPR018261);NIAS_FLcDNA=001-037-B10;Expression=AK061690;TENOR=Os01t0924000-01;KEGG=Os01t0924000-01
Chr01	irgsp1_rep	five_prime_UTR	40453863	40453911	.	+	.	Parent=Os01t0924000-01
Chr01	irgsp1_rep	CDS	40453912	40454220	.	+	0	Parent=Os01t0924000-01
Chr01	irgsp1_rep	CDS	40455019	40455120	.	+	0	Parent=Os01t0924000-01
Chr01	irgsp1_rep	CDS	40455206	40455382	.	+	0	Parent=Os01t0924000-01
Chr01	irgsp1_rep	three_prime_UTR	40455383	40455489	.	+	.	Parent=Os01t0924000-01
Chr01	irgsp1_rep	mRNA	40453864	40455608	.	+	.	ID=Os01t0924000-02;Name=Os01t0924000-02;Locus_id=Os01g0924000;Note=Similar to 50S ribosomal protein L27%2C chloroplastic.;Transcript_evidence=AK120797 (DDBJ%2C Best hit);ORF_evidence=O65037 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L27 (IPR001684);NIAS_FLcDNA=J023012E09;Expression=AK120797;TENOR=Os01t0924000-02;KEGG=Os01t0924000-02
Chr01	irgsp1_rep	five_prime_UTR	40453864	40453911	.	+	.	Parent=Os01t0924000-02
Chr01	irgsp1_rep	CDS	40453912	40454295	.	+	0	Parent=Os01t0924000-02
Chr01	irgsp1_rep	three_prime_UTR	40454296	40455120	.	+	.	Parent=Os01t0924000-02
Chr01	irgsp1_rep	three_prime_UTR	40455206	40455608	.	+	.	Parent=Os01t0924000-02
Chr01	irgsp1_rep	mRNA	40455789	40456679	.	+	.	ID=Os01t0924100-01;Name=Os01t0924100-01;Locus_id=Os01g0924100;Note=Non-protein coding transcript.;Transcript_evidence=AK062847 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-107-H11;TENOR=Os01t0924100-01
Chr01	irgsp1_rep	exon	40455789	40456679	.	+	.	Parent=Os01t0924100-01
Chr01	irgsp1_rep	mRNA	40460001	40461062	.	+	.	ID=Os01t0924200-01;Name=Os01t0924200-01;Locus_id=Os01g0924200;Note=Conserved hypothetical protein.;Transcript_evidence=AK059879 (DDBJ%2C Best hit),AK071017 (DDBJ%2C Best hit);ORF_evidence=A2WYI8 (UniProt);NIAS_FLcDNA=006-207-G11,J023080J04;Expression=AK059879;TENOR=Os01t0924200-01;KEGG=Os01t0924200-01
Chr01	irgsp1_rep	five_prime_UTR	40460001	40460182	.	+	.	Parent=Os01t0924200-01
Chr01	irgsp1_rep	CDS	40460183	40460749	.	+	0	Parent=Os01t0924200-01
Chr01	irgsp1_rep	three_prime_UTR	40460750	40461062	.	+	.	Parent=Os01t0924200-01
Chr01	irgsp1_rep	mRNA	40463040	40467753	.	-	.	ID=Os01t0924300-01;Name=Os01t0924300-01;Locus_id=Os01g0924300;Oryzabase Gene Symbol Synonym(s)=OsWD40-29;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK100821 (DDBJ%2C Best hit);ORF_evidence=B6UFL7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J023122G10;Oryzabase=10710;Expression=AK100821;TENOR=Os01t0924300-01;KEGG=Os01t0924300-01
Chr01	irgsp1_rep	five_prime_UTR	40467628	40467753	.	-	.	Parent=Os01t0924300-01
Chr01	irgsp1_rep	CDS	40467509	40467627	.	-	0	Parent=Os01t0924300-01
Chr01	irgsp1_rep	CDS	40467226	40467434	.	-	1	Parent=Os01t0924300-01
Chr01	irgsp1_rep	CDS	40467019	40467098	.	-	2	Parent=Os01t0924300-01
Chr01	irgsp1_rep	CDS	40466806	40466905	.	-	0	Parent=Os01t0924300-01
Chr01	irgsp1_rep	CDS	40466439	40466561	.	-	2	Parent=Os01t0924300-01
Chr01	irgsp1_rep	CDS	40466254	40466312	.	-	2	Parent=Os01t0924300-01
Chr01	irgsp1_rep	CDS	40466082	40466153	.	-	0	Parent=Os01t0924300-01
Chr01	irgsp1_rep	CDS	40465379	40465446	.	-	0	Parent=Os01t0924300-01
Chr01	irgsp1_rep	CDS	40465197	40465293	.	-	1	Parent=Os01t0924300-01
Chr01	irgsp1_rep	CDS	40465044	40465118	.	-	0	Parent=Os01t0924300-01
Chr01	irgsp1_rep	CDS	40464492	40464590	.	-	0	Parent=Os01t0924300-01
Chr01	irgsp1_rep	CDS	40463891	40464031	.	-	0	Parent=Os01t0924300-01
Chr01	irgsp1_rep	CDS	40463766	40463795	.	-	0	Parent=Os01t0924300-01
Chr01	irgsp1_rep	CDS	40463628	40463690	.	-	0	Parent=Os01t0924300-01
Chr01	irgsp1_rep	CDS	40463456	40463533	.	-	0	Parent=Os01t0924300-01
Chr01	irgsp1_rep	CDS	40463314	40463364	.	-	0	Parent=Os01t0924300-01
Chr01	irgsp1_rep	three_prime_UTR	40463040	40463313	.	-	.	Parent=Os01t0924300-01
Chr01	irgsp1_rep	mRNA	40463053	40465120	.	-	.	ID=Os01t0924300-02;Name=Os01t0924300-02;Locus_id=Os01g0924300;Oryzabase Gene Symbol Synonym(s)=OsWD40-29;Note=Similar to periodic tryptophan protein 1.;Transcript_evidence=AK112027 (DDBJ%2C Best hit);ORF_evidence=B6UFL7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=001-037-E12;Oryzabase=10710;Expression=AK112027;TENOR=Os01t0924300-02;KEGG=Os01t0924300-02
Chr01	irgsp1_rep	five_prime_UTR	40465119	40465120	.	-	.	Parent=Os01t0924300-02
Chr01	irgsp1_rep	CDS	40465044	40465118	.	-	0	Parent=Os01t0924300-02
Chr01	irgsp1_rep	CDS	40464492	40464590	.	-	0	Parent=Os01t0924300-02
Chr01	irgsp1_rep	CDS	40463891	40464031	.	-	0	Parent=Os01t0924300-02
Chr01	irgsp1_rep	CDS	40463766	40463795	.	-	0	Parent=Os01t0924300-02
Chr01	irgsp1_rep	CDS	40463628	40463690	.	-	0	Parent=Os01t0924300-02
Chr01	irgsp1_rep	CDS	40463456	40463533	.	-	0	Parent=Os01t0924300-02
Chr01	irgsp1_rep	CDS	40463314	40463364	.	-	0	Parent=Os01t0924300-02
Chr01	irgsp1_rep	three_prime_UTR	40463053	40463313	.	-	.	Parent=Os01t0924300-02
Chr01	irgsp1_rep	mRNA	40477240	40479093	.	+	.	ID=Os01t0924400-01;Name=Os01t0924400-01;Locus_id=Os01g0924400;Oryzabase Gene Symbol Synonym(s)=OsTCP6%2C TCP6;Oryzabase Gene Name Synonym(s)=TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 6;Note=Similar to Auxin-induced basic helix-loop-helix transcription factor.;Transcript_evidence=AK072037 (DDBJ%2C Best hit);ORF_evidence=B6U2U5 (UniProt);InterPro=Transcription factor%2C TCP (IPR005333),Transcription factor TCP subgroup (IPR017887);NIAS_FLcDNA=J013106J07;Oryzabase=12393;Expression=AK072037;TENOR=Os01t0924400-01;KEGG=Os01t0924400-01
Chr01	irgsp1_rep	five_prime_UTR	40477240	40477479	.	+	.	Parent=Os01t0924400-01
Chr01	irgsp1_rep	CDS	40477480	40478433	.	+	0	Parent=Os01t0924400-01
Chr01	irgsp1_rep	three_prime_UTR	40478434	40479093	.	+	.	Parent=Os01t0924400-01
Chr01	irgsp1_rep	mRNA	40479136	40479456	.	+	.	ID=Os01t0924500-01;Name=Os01t0924500-01;Locus_id=Os01g0924500;Note=Non-protein coding transcript.;Transcript_evidence=AK060236 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-003-C01;TENOR=Os01t0924500-01
Chr01	irgsp1_rep	exon	40479136	40479456	.	+	.	Parent=Os01t0924500-01
Chr01	irgsp1_rep	mRNA	40483306	40485494	.	-	.	ID=Os01t0924600-01;Name=Os01t0924600-01;Locus_id=Os01g0924600;Note=Conserved hypothetical protein.;Transcript_evidence=AK060620 (DDBJ%2C Best hit);ORF_evidence=Q5JJP6 (UniProt);NIAS_FLcDNA=001-026-D02;Expression=AK060620;TENOR=Os01t0924600-01;KEGG=Os01t0924600-01
Chr01	irgsp1_rep	five_prime_UTR	40485494	40485494	.	-	.	Parent=Os01t0924600-01
Chr01	irgsp1_rep	CDS	40484586	40485493	.	-	0	Parent=Os01t0924600-01
Chr01	irgsp1_rep	CDS	40484239	40484381	.	-	1	Parent=Os01t0924600-01
Chr01	irgsp1_rep	CDS	40483655	40483974	.	-	2	Parent=Os01t0924600-01
Chr01	irgsp1_rep	three_prime_UTR	40483306	40483654	.	-	.	Parent=Os01t0924600-01
Chr01	irgsp1_rep	mRNA	40493694	40495714	.	+	.	ID=Os01t0924700-01;Name=Os01t0924700-01;Locus_id=Os01g0924700;Note=Conserved hypothetical protein.;Transcript_evidence=AK107827 (DDBJ%2C Best hit);ORF_evidence=A2WYJ2 (UniProt);NIAS_FLcDNA=002-133-G08;Expression=AK107827;TENOR=Os01t0924700-01;KEGG=Os01t0924700-01
Chr01	irgsp1_rep	five_prime_UTR	40493694	40494053	.	+	.	Parent=Os01t0924700-01
Chr01	irgsp1_rep	CDS	40494054	40494173	.	+	0	Parent=Os01t0924700-01
Chr01	irgsp1_rep	CDS	40495284	40495520	.	+	0	Parent=Os01t0924700-01
Chr01	irgsp1_rep	three_prime_UTR	40495521	40495714	.	+	.	Parent=Os01t0924700-01
Chr01	irgsp1_rep	mRNA	40496253	40498071	.	-	.	ID=Os01t0924800-00;Name=Os01t0924800-00;Locus_id=Os01g0924800;Oryzabase Gene Name Synonym(s)=ribosomal protein;Note=Similar to 60S ribosomal protein l7a (Fragment).;Transcript_evidence=BT018084 (DDBJ);ORF_evidence=A6N0C0 (UniProt);GO=Biological Process: ribosome biogenesis (GO:0042254),Cellular Component: ribonucleoprotein complex (GO:0030529);InterPro=Ribosomal protein L7A/L8 (IPR001921),Ribosomal protein L7Ae conserved site (IPR004037),Ribosomal protein L7Ae/L30e/S12e/Gadd45 (IPR004038),Ribosomal protein L7Ae/L8/Nhp2 family (IPR018492);Oryzabase=22723;TENOR=Os01t0924800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	40497933	40498071	.	-	.	Parent=Os01t0924800-00
Chr01	irgsp1_rep	five_prime_UTR	40497143	40497188	.	-	.	Parent=Os01t0924800-00
Chr01	irgsp1_rep	CDS	40497020	40497142	.	-	0	Parent=Os01t0924800-00
Chr01	irgsp1_rep	CDS	40496766	40496894	.	-	0	Parent=Os01t0924800-00
Chr01	irgsp1_rep	CDS	40496569	40496661	.	-	0	Parent=Os01t0924800-00
Chr01	irgsp1_rep	CDS	40496343	40496474	.	-	0	Parent=Os01t0924800-00
Chr01	irgsp1_rep	three_prime_UTR	40496253	40496342	.	-	.	Parent=Os01t0924800-00
Chr01	irgsp1_rep	mRNA	40501147	40507498	.	+	.	ID=Os01t0924900-01;Name=Os01t0924900-01;Locus_id=Os01g0924900;Oryzabase Gene Symbol Synonym(s)=BIP112;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 112%2C BRI1-interacting protein 112%2C brassinosteroid receptor kinase-interacting protein 112;Note=GTP-binding signal recognition particle SRP54%2C G-domain containing protein.;Transcript_evidence=AK067886 (DDBJ%2C Best hit);ORF_evidence=NP_001147923.1 (RefSeq);InterPro=DEK%2C C-terminal (IPR014876);NIAS_FLcDNA=J013128L13;Oryzabase=13682;Expression=AK067886;TENOR=Os01t0924900-01;KEGG=Os01t0924900-01
Chr01	irgsp1_rep	five_prime_UTR	40501147	40501244	.	+	.	Parent=Os01t0924900-01
Chr01	irgsp1_rep	CDS	40501245	40501526	.	+	0	Parent=Os01t0924900-01
Chr01	irgsp1_rep	CDS	40501781	40501814	.	+	0	Parent=Os01t0924900-01
Chr01	irgsp1_rep	CDS	40503260	40503339	.	+	2	Parent=Os01t0924900-01
Chr01	irgsp1_rep	CDS	40503418	40503477	.	+	0	Parent=Os01t0924900-01
Chr01	irgsp1_rep	CDS	40503575	40503685	.	+	0	Parent=Os01t0924900-01
Chr01	irgsp1_rep	CDS	40503768	40503845	.	+	0	Parent=Os01t0924900-01
Chr01	irgsp1_rep	CDS	40503917	40503988	.	+	0	Parent=Os01t0924900-01
Chr01	irgsp1_rep	CDS	40505675	40506179	.	+	0	Parent=Os01t0924900-01
Chr01	irgsp1_rep	CDS	40506652	40506749	.	+	2	Parent=Os01t0924900-01
Chr01	irgsp1_rep	CDS	40506826	40506856	.	+	0	Parent=Os01t0924900-01
Chr01	irgsp1_rep	CDS	40506987	40507165	.	+	2	Parent=Os01t0924900-01
Chr01	irgsp1_rep	three_prime_UTR	40507166	40507498	.	+	.	Parent=Os01t0924900-01
Chr01	irgsp1_rep	mRNA	40503649	40506169	.	+	.	ID=Os01t0924900-02;Name=Os01t0924900-02;Locus_id=Os01g0924900;Oryzabase Gene Symbol Synonym(s)=BIP112;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 112%2C BRI1-interacting protein 112%2C brassinosteroid receptor kinase-interacting protein 112;Note=Similar to BRI1-KD interacting protein 112 (Fragment).;Transcript_evidence=AK058422 (DDBJ%2C Best hit);ORF_evidence=Q762A2 (UniProt);NIAS_FLcDNA=001-015-D10;Oryzabase=13682;Expression=AK058422;TENOR=Os01t0924900-02;KEGG=Os01t0924900-02
Chr01	irgsp1_rep	five_prime_UTR	40503649	40503649	.	+	.	Parent=Os01t0924900-02
Chr01	irgsp1_rep	CDS	40503650	40503685	.	+	0	Parent=Os01t0924900-02
Chr01	irgsp1_rep	CDS	40503768	40503845	.	+	0	Parent=Os01t0924900-02
Chr01	irgsp1_rep	CDS	40503917	40503988	.	+	0	Parent=Os01t0924900-02
Chr01	irgsp1_rep	CDS	40505675	40506169	.	+	0	Parent=Os01t0924900-02
Chr01	irgsp1_rep	mRNA	40508920	40511048	.	+	.	ID=Os01t0924933-01;Name=Os01t0924933-01;Locus_id=Os01g0924933;CGSNL Gene Symbol=DPW2;CGSNL Gene Name=DEFECTIVE POLLEN WALL 2;Oryzabase Gene Symbol Synonym(s)=OsDPW2;Oryzabase Gene Name Synonym(s)=defective pollen wall 2;Note=Transferase family protein.;Transcript_evidence=AK243104 (DDBJ%2C Best hit);ORF_evidence=NP_001150426.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J100025N23;Oryzabase=21722;TENOR=Os01t0924933-01;KEGG=Os01t0924933-01
Chr01	irgsp1_rep	five_prime_UTR	40508920	40508957	.	+	.	Parent=Os01t0924933-01
Chr01	irgsp1_rep	CDS	40508958	40508960	.	+	0	Parent=Os01t0924933-01
Chr01	irgsp1_rep	CDS	40509077	40509524	.	+	0	Parent=Os01t0924933-01
Chr01	irgsp1_rep	CDS	40509952	40510844	.	+	2	Parent=Os01t0924933-01
Chr01	irgsp1_rep	three_prime_UTR	40510845	40511048	.	+	.	Parent=Os01t0924933-01
Chr01	irgsp1_rep	mRNA	40509056	40510844	.	+	.	ID=Os01t0924933-02;Name=Os01t0924933-02;Locus_id=Os01g0924933;RAP-DB Gene Symbol Synonym(s)=DPW2;RAP-DB Gene Name Synonym(s)=Defective Pollen Wall 2;CGSNL Gene Symbol=DPW2;CGSNL Gene Name=DEFECTIVE POLLEN WALL 2;Oryzabase Gene Symbol Synonym(s)=OsDPW2;Oryzabase Gene Name Synonym(s)=defective pollen wall 2;Note=BAHD/HXXXD acyltransferase (class V)%2C Polymerized protective layer synthesis of anther cuticle and pollen wall;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);Manual Curation=February 17%2C 2017;Literature_PMID=27246096;Oryzabase=21722
Chr01	irgsp1_rep	CDS	40509056	40509061	.	+	0	Parent=Os01t0924933-02
Chr01	irgsp1_rep	CDS	40509110	40509524	.	+	0	Parent=Os01t0924933-02
Chr01	irgsp1_rep	CDS	40509952	40510844	.	+	2	Parent=Os01t0924933-02
Chr01	irgsp1_rep	mRNA	40526591	40527179	.	-	.	ID=Os01t0924966-00;Name=Os01t0924966-00;Locus_id=Os01g0924966;CGSNL Gene Symbol=SAUR3;CGSNL Gene Name=SMALL AUXIN-UP RNA 3;Oryzabase Gene Symbol Synonym(s)=OsSAUR3;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 3;Note=Auxin responsive SAUR protein family protein.;Transcript_evidence=tplb0019a16 (Wheat FLcDNA);ORF_evidence=XP_002299329.1 (RefSeq);InterPro=Auxin responsive SAUR protein (IPR003676);Oryzabase=9128;TENOR=Os01t0924966-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	40527113	40527179	.	-	.	Parent=Os01t0924966-00
Chr01	irgsp1_rep	CDS	40526591	40527112	.	-	0	Parent=Os01t0924966-00
Chr01	irgsp1_rep	mRNA	40541063	40554751	.	-	.	ID=Os01t0925000-01;Name=Os01t0925000-01;Locus_id=Os01g0925000;Note=ENTH/VHS domain containing protein.;Transcript_evidence=AK103764 (DDBJ%2C Best hit);ORF_evidence=B9EVY9 (UniProt);InterPro=RNA polymerase II%2C large subunit%2C CTD (IPR006569),Domain of unknown function DUF618 (IPR006903),ENTH/VHS (IPR008942);NIAS_FLcDNA=J033143H08;Expression=AK103764;TENOR=Os01t0925000-01;KEGG=Os01t0925000-01
Chr01	irgsp1_rep	five_prime_UTR	40554587	40554751	.	-	.	Parent=Os01t0925000-01
Chr01	irgsp1_rep	five_prime_UTR	40553558	40553612	.	-	.	Parent=Os01t0925000-01
Chr01	irgsp1_rep	CDS	40553482	40553557	.	-	0	Parent=Os01t0925000-01
Chr01	irgsp1_rep	CDS	40552701	40552948	.	-	2	Parent=Os01t0925000-01
Chr01	irgsp1_rep	CDS	40544411	40544506	.	-	0	Parent=Os01t0925000-01
Chr01	irgsp1_rep	CDS	40544138	40544294	.	-	0	Parent=Os01t0925000-01
Chr01	irgsp1_rep	CDS	40542550	40542689	.	-	2	Parent=Os01t0925000-01
Chr01	irgsp1_rep	CDS	40542420	40542455	.	-	0	Parent=Os01t0925000-01
Chr01	irgsp1_rep	CDS	40541505	40542224	.	-	0	Parent=Os01t0925000-01
Chr01	irgsp1_rep	three_prime_UTR	40541063	40541504	.	-	.	Parent=Os01t0925000-01
Chr01	irgsp1_rep	mRNA	40540981	40554592	.	-	.	ID=Os01t0925000-02;Name=Os01t0925000-02;Locus_id=Os01g0925000;Note=ENTH/VHS domain containing protein.;Transcript_evidence=AK066132 (DDBJ%2C Best hit);ORF_evidence=B9EVY9 (UniProt);InterPro=RNA polymerase II%2C large subunit%2C CTD (IPR006569),Domain of unknown function DUF618 (IPR006903),ENTH/VHS (IPR008942);NIAS_FLcDNA=J013051M20;Expression=AK066132;TENOR=Os01t0925000-02;KEGG=Os01t0925000-02
Chr01	irgsp1_rep	five_prime_UTR	40553558	40554592	.	-	.	Parent=Os01t0925000-02
Chr01	irgsp1_rep	CDS	40553482	40553557	.	-	0	Parent=Os01t0925000-02
Chr01	irgsp1_rep	CDS	40552701	40552948	.	-	2	Parent=Os01t0925000-02
Chr01	irgsp1_rep	CDS	40544411	40544506	.	-	0	Parent=Os01t0925000-02
Chr01	irgsp1_rep	CDS	40544138	40544294	.	-	0	Parent=Os01t0925000-02
Chr01	irgsp1_rep	CDS	40542550	40542689	.	-	2	Parent=Os01t0925000-02
Chr01	irgsp1_rep	CDS	40542420	40542455	.	-	0	Parent=Os01t0925000-02
Chr01	irgsp1_rep	CDS	40541505	40542224	.	-	0	Parent=Os01t0925000-02
Chr01	irgsp1_rep	three_prime_UTR	40540981	40541504	.	-	.	Parent=Os01t0925000-02
Chr01	irgsp1_rep	mRNA	40559547	40561419	.	-	.	ID=Os01t0925100-01;Name=Os01t0925100-01;Locus_id=Os01g0925100;Note=Conserved hypothetical protein.;Transcript_evidence=AK120911 (DDBJ%2C Best hit);ORF_evidence=Q8RUA3 (UniProt);NIAS_FLcDNA=J023034B11;Expression=AK120911;TENOR=Os01t0925100-01;KEGG=Os01t0925100-01
Chr01	irgsp1_rep	five_prime_UTR	40561362	40561419	.	-	.	Parent=Os01t0925100-01
Chr01	irgsp1_rep	CDS	40561190	40561361	.	-	0	Parent=Os01t0925100-01
Chr01	irgsp1_rep	CDS	40560762	40561153	.	-	2	Parent=Os01t0925100-01
Chr01	irgsp1_rep	three_prime_UTR	40559547	40560761	.	-	.	Parent=Os01t0925100-01
Chr01	irgsp1_rep	mRNA	40563533	40566329	.	+	.	ID=Os01t0925200-01;Name=Os01t0925200-01;Locus_id=Os01g0925200;Note=Similar to Enoyl CoA hydratase-like protein.;Transcript_evidence=AK109471 (DDBJ%2C Best hit);ORF_evidence=B6TTI6 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Crotonase%2C core (IPR001753);NIAS_FLcDNA=001-128-E06;Expression=AK109471;TENOR=Os01t0925200-01;KEGG=Os01t0925200-01
Chr01	irgsp1_rep	five_prime_UTR	40563533	40563585	.	+	.	Parent=Os01t0925200-01
Chr01	irgsp1_rep	CDS	40563586	40564270	.	+	0	Parent=Os01t0925200-01
Chr01	irgsp1_rep	CDS	40565704	40565894	.	+	2	Parent=Os01t0925200-01
Chr01	irgsp1_rep	three_prime_UTR	40565895	40566329	.	+	.	Parent=Os01t0925200-01
Chr01	irgsp1_rep	mRNA	40566683	40569769	.	-	.	ID=Os01t0925300-01;Name=Os01t0925300-01;Locus_id=Os01g0925300;CGSNL Gene Symbol=DHHC4;CGSNL Gene Name=DHHC DOMAIN PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OsDHHC4;Oryzabase Gene Name Synonym(s)=DHHC domain protein 4;Note=Zinc finger%2C DHHC-type domain containing protein.;Transcript_evidence=AK103046 (DDBJ%2C Best hit);ORF_evidence=B4FAG9 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C DHHC-type%2C palmitoyltransferase (IPR001594);NIAS_FLcDNA=J033117G06;Oryzabase=22452;Expression=AK103046;TENOR=Os01t0925300-01;KEGG=Os01t0925300-01
Chr01	irgsp1_rep	five_prime_UTR	40569579	40569769	.	-	.	Parent=Os01t0925300-01
Chr01	irgsp1_rep	CDS	40569492	40569578	.	-	0	Parent=Os01t0925300-01
Chr01	irgsp1_rep	CDS	40568689	40568871	.	-	0	Parent=Os01t0925300-01
Chr01	irgsp1_rep	CDS	40568187	40568483	.	-	0	Parent=Os01t0925300-01
Chr01	irgsp1_rep	CDS	40567600	40567833	.	-	0	Parent=Os01t0925300-01
Chr01	irgsp1_rep	CDS	40567064	40567504	.	-	0	Parent=Os01t0925300-01
Chr01	irgsp1_rep	three_prime_UTR	40566683	40567063	.	-	.	Parent=Os01t0925300-01
Chr01	irgsp1_rep	mRNA	40567146	40567620	.	+	.	ID=Os01t0925350-00;Name=Os01t0925350-00;Locus_id=Os01g0925350;Note=Non-protein coding transcript.;Transcript_evidence=EU943668 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0925350-00
Chr01	irgsp1_rep	exon	40567146	40567620	.	+	.	Parent=Os01t0925350-00
Chr01	irgsp1_rep	mRNA	40572822	40573816	.	+	.	ID=Os01t0925400-01;Name=Os01t0925400-01;Locus_id=Os01g0925400;CGSNL Gene Symbol=NAC41;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 41;Oryzabase Gene Symbol Synonym(s)=ONAC041%2C ONAC41%2C ONAC050%2C ONAC50;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 041%2C NAC domain-containing protein 41%2C NAC domain-containing protein 50;Note=No apical meristem (NAM) protein domain containing protein.;Transcript_evidence=AK068446 (DDBJ%2C Best hit),AK067450 (DDBJ%2C Best hit);ORF_evidence=NP_001151237.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=J013153H06,J013106M04;Oryzabase=11481;Expression=AK068446;TENOR=Os01t0925400-01;KEGG=Os01t0925400-01
Chr01	irgsp1_rep	five_prime_UTR	40572822	40572936	.	+	.	Parent=Os01t0925400-01
Chr01	irgsp1_rep	CDS	40572937	40573138	.	+	0	Parent=Os01t0925400-01
Chr01	irgsp1_rep	CDS	40573232	40573716	.	+	2	Parent=Os01t0925400-01
Chr01	irgsp1_rep	three_prime_UTR	40573717	40573816	.	+	.	Parent=Os01t0925400-01
Chr01	irgsp1_rep	mRNA	40584383	40585467	.	+	.	ID=Os01t0925600-01;Name=Os01t0925600-01;Locus_id=Os01g0925600;Oryzabase Gene Symbol Synonym(s)=OsSTA41%2C STA41;Note=Conserved hypothetical protein.;Transcript_evidence=AK070355 (DDBJ%2C Best hit);ORF_evidence=B8A8G6 (UniProt);NIAS_FLcDNA=J023054M22;Oryzabase=19348;Expression=AK070355;TENOR=Os01t0925600-01;KEGG=Os01t0925600-01
Chr01	irgsp1_rep	five_prime_UTR	40584383	40584466	.	+	.	Parent=Os01t0925600-01
Chr01	irgsp1_rep	CDS	40584467	40584755	.	+	0	Parent=Os01t0925600-01
Chr01	irgsp1_rep	CDS	40584851	40585167	.	+	2	Parent=Os01t0925600-01
Chr01	irgsp1_rep	three_prime_UTR	40585168	40585467	.	+	.	Parent=Os01t0925600-01
Chr01	irgsp1_rep	mRNA	40585450	40587442	.	-	.	ID=Os01t0925700-01;Name=Os01t0925700-01;Locus_id=Os01g0925700;Note=Similar to predicted protein.;Transcript_evidence=AK242336 (DDBJ%2C Best hit);ORF_evidence=NP_001148044.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J075199I04;TENOR=Os01t0925700-01;KEGG=Os01t0925700-01 (EC:2.7.11.22)
Chr01	irgsp1_rep	five_prime_UTR	40587441	40587442	.	-	.	Parent=Os01t0925700-01
Chr01	irgsp1_rep	CDS	40587126	40587440	.	-	0	Parent=Os01t0925700-01
Chr01	irgsp1_rep	CDS	40586817	40587032	.	-	0	Parent=Os01t0925700-01
Chr01	irgsp1_rep	CDS	40586493	40586593	.	-	0	Parent=Os01t0925700-01
Chr01	irgsp1_rep	CDS	40586288	40586408	.	-	1	Parent=Os01t0925700-01
Chr01	irgsp1_rep	CDS	40585716	40586078	.	-	0	Parent=Os01t0925700-01
Chr01	irgsp1_rep	three_prime_UTR	40585450	40585715	.	-	.	Parent=Os01t0925700-01
Chr01	irgsp1_rep	mRNA	40596070	40599069	.	-	.	ID=Os01t0925800-01;Name=Os01t0925800-01;Locus_id=Os01g0925800;CGSNL Gene Symbol=UBC44;CGSNL Gene Name=UBIQUITIN-CONJUGATING ENZYME 44;Oryzabase Gene Symbol Synonym(s)=OsUBC44;Oryzabase Gene Name Synonym(s)=Ubiquitin-conjugating enzyme 44;Note=Similar to Ubiquitin conjugating enzyme.;Transcript_evidence=AK073357 (DDBJ%2C Best hit);ORF_evidence=A2WYK3 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal (IPR000449),Ubiquitin-conjugating enzyme%2C E2 (IPR000608),UBA-like (IPR009060),Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (IPR015940),Ubiquitin-conjugating enzyme/RWD-like (IPR016135),Ubiquitin-conjugating enzyme%2C active site (IPR023313);NIAS_FLcDNA=J033027F19;Oryzabase=19577;Expression=AK073357;TENOR=Os01t0925800-01;KEGG=Os01t0925800-01 (EC:6.3.2.19)
Chr01	irgsp1_rep	five_prime_UTR	40598980	40599069	.	-	.	Parent=Os01t0925800-01
Chr01	irgsp1_rep	CDS	40598799	40598979	.	-	0	Parent=Os01t0925800-01
Chr01	irgsp1_rep	CDS	40598188	40598236	.	-	2	Parent=Os01t0925800-01
Chr01	irgsp1_rep	CDS	40597607	40597766	.	-	1	Parent=Os01t0925800-01
Chr01	irgsp1_rep	CDS	40596453	40596542	.	-	0	Parent=Os01t0925800-01
Chr01	irgsp1_rep	CDS	40596252	40596359	.	-	0	Parent=Os01t0925800-01
Chr01	irgsp1_rep	three_prime_UTR	40596070	40596251	.	-	.	Parent=Os01t0925800-01
Chr01	irgsp1_rep	mRNA	40607554	40610311	.	+	.	ID=Os01t0926200-01;Name=Os01t0926200-01;Locus_id=Os01g0926200;Oryzabase Gene Symbol Synonym(s)=OsRFP;Oryzabase Gene Name Synonym(s)=RING finger protein;Note=Similar to RING-H2 finger protein RHF1a (Fragment).;Transcript_evidence=AK073650 (DDBJ%2C Best hit);ORF_evidence=B4FYL2 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J033050H01;Oryzabase=21149;Expression=AK073650;TENOR=Os01t0926200-01;KEGG=Os01t0926200-01
Chr01	irgsp1_rep	five_prime_UTR	40607554	40607758	.	+	.	Parent=Os01t0926200-01
Chr01	irgsp1_rep	five_prime_UTR	40608698	40608703	.	+	.	Parent=Os01t0926200-01
Chr01	irgsp1_rep	CDS	40608704	40608823	.	+	0	Parent=Os01t0926200-01
Chr01	irgsp1_rep	CDS	40609325	40609757	.	+	0	Parent=Os01t0926200-01
Chr01	irgsp1_rep	CDS	40609858	40609967	.	+	2	Parent=Os01t0926200-01
Chr01	irgsp1_rep	CDS	40610096	40610122	.	+	0	Parent=Os01t0926200-01
Chr01	irgsp1_rep	three_prime_UTR	40610123	40610311	.	+	.	Parent=Os01t0926200-01
Chr01	irgsp1_rep	mRNA	40607725	40610287	.	+	.	ID=Os01t0926200-02;Name=Os01t0926200-02;Locus_id=Os01g0926200;Oryzabase Gene Symbol Synonym(s)=OsRFP;Oryzabase Gene Name Synonym(s)=RING finger protein;Note=Similar to RING-H2 finger protein RHF1a (Fragment).;Transcript_evidence=AK066457 (DDBJ%2C Best hit);ORF_evidence=B4FYL2 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J013065E10;Oryzabase=21149;Expression=AK066457;TENOR=Os01t0926200-02;KEGG=Os01t0926200-02
Chr01	irgsp1_rep	five_prime_UTR	40607725	40607810	.	+	.	Parent=Os01t0926200-02
Chr01	irgsp1_rep	five_prime_UTR	40607906	40608703	.	+	.	Parent=Os01t0926200-02
Chr01	irgsp1_rep	CDS	40608704	40608823	.	+	0	Parent=Os01t0926200-02
Chr01	irgsp1_rep	CDS	40609325	40609757	.	+	0	Parent=Os01t0926200-02
Chr01	irgsp1_rep	CDS	40609858	40609967	.	+	2	Parent=Os01t0926200-02
Chr01	irgsp1_rep	CDS	40610096	40610122	.	+	0	Parent=Os01t0926200-02
Chr01	irgsp1_rep	three_prime_UTR	40610123	40610287	.	+	.	Parent=Os01t0926200-02
Chr01	irgsp1_rep	mRNA	40610656	40613449	.	-	.	ID=Os01t0926300-01;Name=Os01t0926300-01;Locus_id=Os01g0926300;Note=Similar to Transaldolase (EC 2.2.1.2).;Transcript_evidence=AK105800 (DDBJ%2C Best hit),AK067632 (DDBJ%2C Best hit),AK072701 (DDBJ%2C Best hit),AK104087 (DDBJ%2C Best hit);ORF_evidence=B4FRC9 (UniProt);NIAS_FLcDNA=001-203-A10,J013112O12,J023139A20,001-030-B10;Oryzabase=22685;TENOR=Os01t0926300-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	40613379	40613449	.	-	.	Parent=Os01t0926300-01
Chr01	irgsp1_rep	CDS	40613224	40613378	.	-	0	Parent=Os01t0926300-01
Chr01	irgsp1_rep	CDS	40612326	40612497	.	-	1	Parent=Os01t0926300-01
Chr01	irgsp1_rep	CDS	40611885	40612235	.	-	0	Parent=Os01t0926300-01
Chr01	irgsp1_rep	CDS	40611537	40611725	.	-	0	Parent=Os01t0926300-01
Chr01	irgsp1_rep	CDS	40611258	40611440	.	-	0	Parent=Os01t0926300-01
Chr01	irgsp1_rep	CDS	40610884	40611132	.	-	0	Parent=Os01t0926300-01
Chr01	irgsp1_rep	three_prime_UTR	40610656	40610883	.	-	.	Parent=Os01t0926300-01
Chr01	irgsp1_rep	mRNA	40610703	40613442	.	+	.	ID=Os01t0926350-00;Name=Os01t0926350-00;Locus_id=Os01g0926350;Note=Hypothetical gene.;Transcript_evidence=BT019303 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0926350-00
Chr01	irgsp1_rep	five_prime_UTR	40610703	40611126	.	+	.	Parent=Os01t0926350-00
Chr01	irgsp1_rep	five_prime_UTR	40611252	40611439	.	+	.	Parent=Os01t0926350-00
Chr01	irgsp1_rep	five_prime_UTR	40611536	40611726	.	+	.	Parent=Os01t0926350-00
Chr01	irgsp1_rep	five_prime_UTR	40611886	40612218	.	+	.	Parent=Os01t0926350-00
Chr01	irgsp1_rep	CDS	40612219	40612240	.	+	0	Parent=Os01t0926350-00
Chr01	irgsp1_rep	CDS	40612330	40612500	.	+	2	Parent=Os01t0926350-00
Chr01	irgsp1_rep	CDS	40613224	40613442	.	+	2	Parent=Os01t0926350-00
Chr01	irgsp1_rep	mRNA	40615730	40619630	.	-	.	ID=Os01t0926400-01;Name=Os01t0926400-01;Locus_id=Os01g0926400;Note=Similar to Pectin-glucuronyltransferase.;Transcript_evidence=AK073976 (DDBJ%2C Best hit);ORF_evidence=B6U2C1 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);NIAS_FLcDNA=J033076M19;Expression=AK073976;TENOR=Os01t0926400-01;KEGG=Os01t0926400-01
Chr01	irgsp1_rep	five_prime_UTR	40619289	40619630	.	-	.	Parent=Os01t0926400-01
Chr01	irgsp1_rep	CDS	40619165	40619288	.	-	0	Parent=Os01t0926400-01
Chr01	irgsp1_rep	CDS	40615971	40617115	.	-	2	Parent=Os01t0926400-01
Chr01	irgsp1_rep	three_prime_UTR	40615730	40615970	.	-	.	Parent=Os01t0926400-01
Chr01	irgsp1_rep	mRNA	40615704	40616946	.	-	.	ID=Os01t0926400-02;Name=Os01t0926400-02;Locus_id=Os01g0926400;Note=Similar to Secondary cell wall-related glycosyltransferase family 47.;Transcript_evidence=AK072752 (DDBJ%2C Best hit);ORF_evidence=B6U2C1 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);NIAS_FLcDNA=J023139D17;Expression=AK072752;TENOR=Os01t0926400-02;KEGG=Os01t0926400-02
Chr01	irgsp1_rep	five_prime_UTR	40616946	40616946	.	-	.	Parent=Os01t0926400-02
Chr01	irgsp1_rep	CDS	40615971	40616945	.	-	0	Parent=Os01t0926400-02
Chr01	irgsp1_rep	three_prime_UTR	40615704	40615970	.	-	.	Parent=Os01t0926400-02
Chr01	irgsp1_rep	mRNA	40615724	40619393	.	-	.	ID=Os01t0926400-03;Name=Os01t0926400-03;Locus_id=Os01g0926400;Note=Similar to Pectin-glucuronyltransferase.;Transcript_evidence=AK063916 (DDBJ%2C Best hit);ORF_evidence=B6U2C1 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);NIAS_FLcDNA=001-123-B02;TENOR=Os01t0926400-03
Chr01	irgsp1_rep	five_prime_UTR	40619289	40619393	.	-	.	Parent=Os01t0926400-03
Chr01	irgsp1_rep	CDS	40619165	40619288	.	-	0	Parent=Os01t0926400-03
Chr01	irgsp1_rep	CDS	40615971	40617115	.	-	2	Parent=Os01t0926400-03
Chr01	irgsp1_rep	three_prime_UTR	40615724	40615970	.	-	.	Parent=Os01t0926400-03
Chr01	irgsp1_rep	mRNA	40615978	40617229	.	+	.	ID=Os01t0926450-01;Name=Os01t0926450-01;Locus_id=Os01g0926450;Note=Hypothetical protein.;Transcript_evidence=AK241690 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065195B04;TENOR=Os01t0926450-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	40615978	40615979	.	+	.	Parent=Os01t0926450-01
Chr01	irgsp1_rep	CDS	40615980	40617164	.	+	0	Parent=Os01t0926450-01
Chr01	irgsp1_rep	three_prime_UTR	40617165	40617229	.	+	.	Parent=Os01t0926450-01
Chr01	irgsp1_rep	mRNA	40624843	40624915	.	-	.	ID=Os01t0926501-00;Name=Os01t0926501-00;Locus_id=Os01g0926501;Note=Non-protein coding transcript.;Transcript_evidence=X02683 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0926501-00
Chr01	irgsp1_rep	exon	40624843	40624915	.	-	.	Parent=Os01t0926501-00
Chr01	irgsp1_rep	mRNA	40626435	40629466	.	-	.	ID=Os01t0926600-01;Name=Os01t0926600-01;Locus_id=Os01g0926600;Oryzabase Gene Symbol Synonym(s)=OsGT47A;Oryzabase Gene Name Synonym(s)=glycosyltransferase gene family 47 member A%2C glycosyltransferase 47A;Note=Similar to Pectin-glucuronyltransferase.;Transcript_evidence=AK068465 (DDBJ%2C Best hit);ORF_evidence=E0ZPV1 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);NIAS_FLcDNA=J013156C14;Oryzabase=18291;Expression=AK068465;TENOR=Os01t0926600-01;KEGG=Os01t0926600-01
Chr01	irgsp1_rep	five_prime_UTR	40629330	40629466	.	-	.	Parent=Os01t0926600-01
Chr01	irgsp1_rep	CDS	40629227	40629329	.	-	0	Parent=Os01t0926600-01
Chr01	irgsp1_rep	CDS	40627819	40628207	.	-	2	Parent=Os01t0926600-01
Chr01	irgsp1_rep	CDS	40627402	40627643	.	-	0	Parent=Os01t0926600-01
Chr01	irgsp1_rep	CDS	40626786	40627299	.	-	1	Parent=Os01t0926600-01
Chr01	irgsp1_rep	three_prime_UTR	40626435	40626785	.	-	.	Parent=Os01t0926600-01
Chr01	irgsp1_rep	mRNA	40633318	40634763	.	-	.	ID=Os01t0926700-00;Name=Os01t0926700-00;Locus_id=Os01g0926700;Oryzabase Gene Symbol Synonym(s)=OsIRX10%2C IRX10;Oryzabase Gene Name Synonym(s)=rice ortholog of Arabidopsis IRX10%2C IRREGULAR XYLEM10;Note=Similar to secondary cell wall-related glycosyltransferase family 47.;Transcript_evidence=CU405596 (DDBJ%2C Best hit);ORF_evidence=NP_001150738.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);Oryzabase=14355;TENOR=Os01t0926700-00;KEGG=Os01t0926700-00
Chr01	irgsp1_rep	five_prime_UTR	40634762	40634763	.	-	.	Parent=Os01t0926700-00
Chr01	irgsp1_rep	CDS	40634675	40634761	.	-	0	Parent=Os01t0926700-00
Chr01	irgsp1_rep	CDS	40633999	40634240	.	-	0	Parent=Os01t0926700-00
Chr01	irgsp1_rep	CDS	40633396	40633909	.	-	1	Parent=Os01t0926700-00
Chr01	irgsp1_rep	three_prime_UTR	40633318	40633395	.	-	.	Parent=Os01t0926700-00
Chr01	irgsp1_rep	mRNA	40644654	40648302	.	+	.	ID=Os01t0926800-01;Name=Os01t0926800-01;Locus_id=Os01g0926800;Oryzabase Gene Name Synonym(s)=sec14 like protein;Note=Cellular retinaldehyde-binding/triple function%2C N-terminal domain containing protein.;Transcript_evidence=AK121373 (DDBJ%2C Best hit);ORF_evidence=O24659 (UniProt);InterPro=Cellular retinaldehyde-binding/triple function%2C C-terminal (IPR001251),Cellular retinaldehyde-binding/triple function%2C N-terminal (IPR008273),Phosphatidylinositol transfer protein-like%2C N-terminal (IPR011074);NIAS_FLcDNA=J023127C08;Oryzabase=15699;Expression=AK121373;TENOR=Os01t0926800-01;KEGG=Os01t0926800-01
Chr01	irgsp1_rep	five_prime_UTR	40644654	40644742	.	+	.	Parent=Os01t0926800-01
Chr01	irgsp1_rep	CDS	40644743	40644838	.	+	0	Parent=Os01t0926800-01
Chr01	irgsp1_rep	CDS	40646235	40646493	.	+	0	Parent=Os01t0926800-01
Chr01	irgsp1_rep	CDS	40647305	40647341	.	+	2	Parent=Os01t0926800-01
Chr01	irgsp1_rep	CDS	40647491	40647596	.	+	1	Parent=Os01t0926800-01
Chr01	irgsp1_rep	CDS	40647727	40647837	.	+	0	Parent=Os01t0926800-01
Chr01	irgsp1_rep	CDS	40647975	40648109	.	+	0	Parent=Os01t0926800-01
Chr01	irgsp1_rep	three_prime_UTR	40648110	40648302	.	+	.	Parent=Os01t0926800-01
Chr01	irgsp1_rep	mRNA	40654238	40664395	.	+	.	ID=Os01t0927000-01;Name=Os01t0927000-01;Locus_id=Os01g0927000;CGSNL Gene Symbol=SDG714;CGSNL Gene Name=SET DOMAIN GROUP PROTEIN 714;Oryzabase Gene Symbol Synonym(s)=OsSDG714%2C OsSET5%2C OsSUVH4;Oryzabase Gene Name Synonym(s)=SET Domain Group Protein714%2C SET protein 5%2C SUVH Histone Methyltransferase 4;Note=Similar to SET domain-containing protein SET118.;Transcript_evidence=AK106700 (DDBJ%2C Best hit);ORF_evidence=Q8L821 (UniProt);GO=Biological Process: histone lysine methylation (GO:0034968),Cellular Component: nucleus (GO:0005634),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: histone-lysine N-methyltransferase activity (GO:0018024),Molecular Function: histone binding (GO:0042393);InterPro=SET domain (IPR001214),SRA-YDG (IPR003105),Post-SET domain (IPR003616),Pre-SET domain (IPR007728);NIAS_FLcDNA=002-114-E02;Oryzabase=7477;Expression=AK106700;TENOR=Os01t0927000-01;KEGG=Os01t0927000-01
Chr01	irgsp1_rep	five_prime_UTR	40654238	40654314	.	+	.	Parent=Os01t0927000-01
Chr01	irgsp1_rep	five_prime_UTR	40654761	40654780	.	+	.	Parent=Os01t0927000-01
Chr01	irgsp1_rep	CDS	40654781	40655212	.	+	0	Parent=Os01t0927000-01
Chr01	irgsp1_rep	CDS	40655815	40655898	.	+	0	Parent=Os01t0927000-01
Chr01	irgsp1_rep	CDS	40656048	40656102	.	+	0	Parent=Os01t0927000-01
Chr01	irgsp1_rep	CDS	40656254	40656363	.	+	2	Parent=Os01t0927000-01
Chr01	irgsp1_rep	CDS	40656993	40657172	.	+	0	Parent=Os01t0927000-01
Chr01	irgsp1_rep	CDS	40657644	40657742	.	+	0	Parent=Os01t0927000-01
Chr01	irgsp1_rep	CDS	40658823	40658921	.	+	0	Parent=Os01t0927000-01
Chr01	irgsp1_rep	CDS	40659669	40659718	.	+	0	Parent=Os01t0927000-01
Chr01	irgsp1_rep	CDS	40659931	40660019	.	+	1	Parent=Os01t0927000-01
Chr01	irgsp1_rep	CDS	40660380	40660542	.	+	2	Parent=Os01t0927000-01
Chr01	irgsp1_rep	CDS	40660940	40661045	.	+	1	Parent=Os01t0927000-01
Chr01	irgsp1_rep	CDS	40663288	40663470	.	+	0	Parent=Os01t0927000-01
Chr01	irgsp1_rep	CDS	40663700	40663927	.	+	0	Parent=Os01t0927000-01
Chr01	irgsp1_rep	CDS	40664014	40664127	.	+	0	Parent=Os01t0927000-01
Chr01	irgsp1_rep	three_prime_UTR	40664128	40664395	.	+	.	Parent=Os01t0927000-01
Chr01	irgsp1_rep	mRNA	40668641	40671873	.	-	.	ID=Os01t0927300-01;Name=Os01t0927300-01;Locus_id=Os01g0927300;CGSNL Gene Symbol=HMP8;CGSNL Gene Name=HEAVY METAL-ASSOCIATED PROTEIN 8;Oryzabase Gene Symbol Synonym(s)=OsHMP8%2C OsHMP08;Oryzabase Gene Name Synonym(s)=Heavy metal-associated protein 8;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK073201 (DDBJ%2C Best hit);ORF_evidence=NP_565819.1 (RefSeq);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);NIAS_FLcDNA=J033021C11;Oryzabase=23533;Expression=AK073201;TENOR=Os01t0927300-01;KEGG=Os01t0927300-01
Chr01	irgsp1_rep	five_prime_UTR	40671823	40671873	.	-	.	Parent=Os01t0927300-01
Chr01	irgsp1_rep	CDS	40671688	40671822	.	-	0	Parent=Os01t0927300-01
Chr01	irgsp1_rep	CDS	40669384	40669465	.	-	0	Parent=Os01t0927300-01
Chr01	irgsp1_rep	CDS	40668893	40669101	.	-	2	Parent=Os01t0927300-01
Chr01	irgsp1_rep	three_prime_UTR	40668641	40668892	.	-	.	Parent=Os01t0927300-01
Chr01	irgsp1_rep	mRNA	40675141	40677841	.	-	.	ID=Os01t0927400-01;Name=Os01t0927400-01;Locus_id=Os01g0927400;Note=Molecular chaperone%2C heat shock protein%2C Hsp40%2C DnaJ domain containing protein.;Transcript_evidence=AK242854 (DDBJ%2C Best hit);ORF_evidence=NP_001045268.2 (RefSeq);InterPro=Domain of unknown function DUF3444 (IPR024593);NIAS_FLcDNA=J090073J02;TENOR=Os01t0927400-01;KEGG=Os01t0927400-01
Chr01	irgsp1_rep	five_prime_UTR	40677654	40677841	.	-	.	Parent=Os01t0927400-01
Chr01	irgsp1_rep	CDS	40677641	40677653	.	-	0	Parent=Os01t0927400-01
Chr01	irgsp1_rep	CDS	40675239	40677103	.	-	2	Parent=Os01t0927400-01
Chr01	irgsp1_rep	three_prime_UTR	40675141	40675238	.	-	.	Parent=Os01t0927400-01
Chr01	irgsp1_rep	mRNA	40679579	40683333	.	+	.	ID=Os01t0927500-01;Name=Os01t0927500-01;Locus_id=Os01g0927500;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK068802 (DDBJ%2C Best hit);ORF_evidence=NP_001151856.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013159J12;Expression=AK068802;TENOR=Os01t0927500-01;KEGG=Os01t0927500-01
Chr01	irgsp1_rep	five_prime_UTR	40679579	40679957	.	+	.	Parent=Os01t0927500-01
Chr01	irgsp1_rep	five_prime_UTR	40680110	40680264	.	+	.	Parent=Os01t0927500-01
Chr01	irgsp1_rep	CDS	40680265	40681199	.	+	0	Parent=Os01t0927500-01
Chr01	irgsp1_rep	CDS	40682660	40682969	.	+	1	Parent=Os01t0927500-01
Chr01	irgsp1_rep	three_prime_UTR	40682970	40683333	.	+	.	Parent=Os01t0927500-01
Chr01	irgsp1_rep	mRNA	40679662	40683903	.	+	.	ID=Os01t0927500-02;Name=Os01t0927500-02;Locus_id=Os01g0927500;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK101312 (DDBJ%2C Best hit);ORF_evidence=NP_001151856.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033033P12;Expression=AK101312;TENOR=Os01t0927500-02;KEGG=Os01t0927500-02
Chr01	irgsp1_rep	five_prime_UTR	40679662	40680264	.	+	.	Parent=Os01t0927500-02
Chr01	irgsp1_rep	CDS	40680265	40681199	.	+	0	Parent=Os01t0927500-02
Chr01	irgsp1_rep	CDS	40682660	40682969	.	+	1	Parent=Os01t0927500-02
Chr01	irgsp1_rep	three_prime_UTR	40682970	40683903	.	+	.	Parent=Os01t0927500-02
Chr01	irgsp1_rep	mRNA	40695664	40700914	.	+	.	ID=Os01t0927600-01;Name=Os01t0927600-01;Locus_id=Os01g0927600;RAP-DB Gene Symbol Synonym(s)=OsARF4%2C OsARF2;RAP-DB Gene Name Synonym(s)=AUXIN RESPONSE FACTOR 4%2C auxin response factor 4%2C auxin response factor 2;CGSNL Gene Symbol=ARF2;CGSNL Gene Name=AUXIN RESPONSE FACTOR 2;Oryzabase Gene Symbol Synonym(s)=OsARF2%2C OsARF4%2C ARF4;Oryzabase Gene Name Synonym(s)=auxin response factor-2%2C auxin response factor 2%2C auxin response factor-4%2C auxin response factor 4;Note=Auxin response factor (ARF) family protein%2C Transcription factor%2C Negative regulation of grain size and weight;Transcript_evidence=AK072309;ORF_evidence=Q5JK20;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Biological Process: response to hormone (GO:0009725),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515),Cellular Component: nucleus (GO:0005634);InterPro=DNA-binding pseudobarrel domain superfamily (IPR015300),B3 DNA binding domain (IPR003340),Auxin response factor (IPR010525),AUX/IAA domain (IPR033389),PB1 domain (IPR000270);NIAS_FLcDNA=J023022C23;Manual Curation=May 1%2C 2018;Literature_PMID=29567449,17408882;Oryzabase=9997;Expression=AK072309;TENOR=Os01t0927600-01;KEGG=Os01t0927600-01;Subcellular location=nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	40695664	40695867	.	+	.	Parent=Os01t0927600-01
Chr01	irgsp1_rep	CDS	40695868	40695919	.	+	0	Parent=Os01t0927600-01
Chr01	irgsp1_rep	CDS	40696037	40696143	.	+	2	Parent=Os01t0927600-01
Chr01	irgsp1_rep	CDS	40696253	40696348	.	+	0	Parent=Os01t0927600-01
Chr01	irgsp1_rep	CDS	40696500	40696556	.	+	0	Parent=Os01t0927600-01
Chr01	irgsp1_rep	CDS	40696674	40696835	.	+	0	Parent=Os01t0927600-01
Chr01	irgsp1_rep	CDS	40696951	40697035	.	+	0	Parent=Os01t0927600-01
Chr01	irgsp1_rep	CDS	40697289	40697379	.	+	2	Parent=Os01t0927600-01
Chr01	irgsp1_rep	CDS	40697454	40697618	.	+	1	Parent=Os01t0927600-01
Chr01	irgsp1_rep	CDS	40697762	40697881	.	+	1	Parent=Os01t0927600-01
Chr01	irgsp1_rep	CDS	40697971	40698043	.	+	1	Parent=Os01t0927600-01
Chr01	irgsp1_rep	CDS	40698123	40698291	.	+	0	Parent=Os01t0927600-01
Chr01	irgsp1_rep	CDS	40698382	40699292	.	+	2	Parent=Os01t0927600-01
Chr01	irgsp1_rep	CDS	40699706	40699896	.	+	0	Parent=Os01t0927600-01
Chr01	irgsp1_rep	CDS	40699984	40700131	.	+	1	Parent=Os01t0927600-01
Chr01	irgsp1_rep	three_prime_UTR	40700398	40700914	.	+	.	Parent=Os01t0927600-01
Chr01	irgsp1_rep	mRNA	40708658	40712960	.	-	.	ID=Os01t0927900-01;Name=Os01t0927900-01;Locus_id=Os01g0927900;Note=Similar to Aspartate kinase precursor (EC 2.7.2.4).;Transcript_evidence=AK073189 (DDBJ%2C Best hit);ORF_evidence=B8A8I6 (UniProt);GO=Biological Process: cellular amino acid biosynthetic process (GO:0008652),Molecular Function: aspartate kinase activity (GO:0004072);InterPro=Aspartate/glutamate/uridylate kinase (IPR001048),Aspartate kinase domain (IPR001341),Aspartate kinase%2C conserved site (IPR018042);NIAS_FLcDNA=J033004I10;Expression=AK073189;TENOR=Os01t0927900-01;KEGG=Os01t0927900-01 (EC:2.7.2.4)
Chr01	irgsp1_rep	five_prime_UTR	40712906	40712960	.	-	.	Parent=Os01t0927900-01
Chr01	irgsp1_rep	CDS	40712468	40712905	.	-	0	Parent=Os01t0927900-01
Chr01	irgsp1_rep	CDS	40711916	40711998	.	-	0	Parent=Os01t0927900-01
Chr01	irgsp1_rep	CDS	40711797	40711837	.	-	1	Parent=Os01t0927900-01
Chr01	irgsp1_rep	CDS	40711557	40711711	.	-	2	Parent=Os01t0927900-01
Chr01	irgsp1_rep	CDS	40711036	40711185	.	-	0	Parent=Os01t0927900-01
Chr01	irgsp1_rep	CDS	40710843	40710938	.	-	0	Parent=Os01t0927900-01
Chr01	irgsp1_rep	CDS	40710573	40710689	.	-	0	Parent=Os01t0927900-01
Chr01	irgsp1_rep	CDS	40710239	40710358	.	-	0	Parent=Os01t0927900-01
Chr01	irgsp1_rep	CDS	40710047	40710139	.	-	0	Parent=Os01t0927900-01
Chr01	irgsp1_rep	CDS	40709853	40709970	.	-	0	Parent=Os01t0927900-01
Chr01	irgsp1_rep	CDS	40709283	40709398	.	-	2	Parent=Os01t0927900-01
Chr01	irgsp1_rep	CDS	40709135	40709197	.	-	0	Parent=Os01t0927900-01
Chr01	irgsp1_rep	CDS	40708927	40709049	.	-	0	Parent=Os01t0927900-01
Chr01	irgsp1_rep	three_prime_UTR	40708658	40708926	.	-	.	Parent=Os01t0927900-01
Chr01	irgsp1_rep	mRNA	40710263	40711189	.	+	.	ID=Os01t0927950-00;Name=Os01t0927950-00;Locus_id=Os01g0927950;Note=Hypothetical gene.;Transcript_evidence=BT068036 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0927950-00;KEGG=Os01t0927950-00
Chr01	irgsp1_rep	five_prime_UTR	40710263	40710354	.	+	.	Parent=Os01t0927950-00
Chr01	irgsp1_rep	five_prime_UTR	40710569	40710610	.	+	.	Parent=Os01t0927950-00
Chr01	irgsp1_rep	CDS	40710611	40710701	.	+	0	Parent=Os01t0927950-00
Chr01	irgsp1_rep	CDS	40710887	40710944	.	+	2	Parent=Os01t0927950-00
Chr01	irgsp1_rep	CDS	40711045	40711117	.	+	1	Parent=Os01t0927950-00
Chr01	irgsp1_rep	three_prime_UTR	40711118	40711189	.	+	.	Parent=Os01t0927950-00
Chr01	irgsp1_rep	mRNA	40714216	40717112	.	-	.	ID=Os01t0928000-01;Name=Os01t0928000-01;Locus_id=Os01g0928000;RAP-DB Gene Symbol Synonym(s)=OsICE2;RAP-DB Gene Name Synonym(s)=Inducer of CBF expression 2;Oryzabase Gene Symbol Synonym(s)=OsbHLH001%2C bHLH001%2C OsbHLH1%2C bHLH1%2C OsICE2%2C ICE2;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 001%2C Inducer of CBF expression 2;Note=Basic helix-loop-helix (bHLH) transcription factor%2C Control of stomatal initiation%2C Regulation of mature stoma differentiation;Transcript_evidence=AK102594;ORF_evidence=Q5JK17;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Helix-loop-helix DNA-binding domain superfamily (IPR036638),Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);NIAS_FLcDNA=J033098G23;Manual Curation=March 5%2C 2020;Literature_PMID=30825332;Oryzabase=10929;Expression=AK102594;TENOR=Os01t0928000-01;KEGG=Os01t0928000-01
Chr01	irgsp1_rep	five_prime_UTR	40717102	40717112	.	-	.	Parent=Os01t0928000-01
Chr01	irgsp1_rep	CDS	40716439	40717101	.	-	0	Parent=Os01t0928000-01
Chr01	irgsp1_rep	CDS	40715226	40715453	.	-	0	Parent=Os01t0928000-01
Chr01	irgsp1_rep	CDS	40714724	40714894	.	-	0	Parent=Os01t0928000-01
Chr01	irgsp1_rep	CDS	40714514	40714597	.	-	0	Parent=Os01t0928000-01
Chr01	irgsp1_rep	three_prime_UTR	40714216	40714513	.	-	.	Parent=Os01t0928000-01
Chr01	irgsp1_rep	mRNA	40723385	40730507	.	-	.	ID=Os01t0928100-01;Name=Os01t0928100-01;Locus_id=Os01g0928100;Note=Similar to expressed protein.;Transcript_evidence=AK120714 (DDBJ%2C Best hit);ORF_evidence=XP_002869690.1 (RefSeq);NIAS_FLcDNA=J023002A11;Expression=AK120714;TENOR=Os01t0928100-01;KEGG=Os01t0928100-01
Chr01	irgsp1_rep	five_prime_UTR	40730417	40730507	.	-	.	Parent=Os01t0928100-01
Chr01	irgsp1_rep	CDS	40730015	40730416	.	-	0	Parent=Os01t0928100-01
Chr01	irgsp1_rep	CDS	40729498	40729682	.	-	0	Parent=Os01t0928100-01
Chr01	irgsp1_rep	CDS	40728203	40728272	.	-	1	Parent=Os01t0928100-01
Chr01	irgsp1_rep	CDS	40728026	40728067	.	-	0	Parent=Os01t0928100-01
Chr01	irgsp1_rep	CDS	40727869	40727931	.	-	0	Parent=Os01t0928100-01
Chr01	irgsp1_rep	CDS	40727570	40727619	.	-	0	Parent=Os01t0928100-01
Chr01	irgsp1_rep	CDS	40727456	40727483	.	-	1	Parent=Os01t0928100-01
Chr01	irgsp1_rep	CDS	40727028	40727102	.	-	0	Parent=Os01t0928100-01
Chr01	irgsp1_rep	CDS	40726823	40726933	.	-	0	Parent=Os01t0928100-01
Chr01	irgsp1_rep	CDS	40726688	40726748	.	-	0	Parent=Os01t0928100-01
Chr01	irgsp1_rep	CDS	40725920	40726037	.	-	2	Parent=Os01t0928100-01
Chr01	irgsp1_rep	CDS	40725711	40725831	.	-	1	Parent=Os01t0928100-01
Chr01	irgsp1_rep	CDS	40725262	40725331	.	-	0	Parent=Os01t0928100-01
Chr01	irgsp1_rep	CDS	40725093	40725134	.	-	2	Parent=Os01t0928100-01
Chr01	irgsp1_rep	CDS	40724920	40724960	.	-	2	Parent=Os01t0928100-01
Chr01	irgsp1_rep	CDS	40724716	40724842	.	-	0	Parent=Os01t0928100-01
Chr01	irgsp1_rep	CDS	40723794	40723900	.	-	2	Parent=Os01t0928100-01
Chr01	irgsp1_rep	three_prime_UTR	40723385	40723793	.	-	.	Parent=Os01t0928100-01
Chr01	irgsp1_rep	mRNA	40737484	40737911	.	+	.	ID=Os01t0928200-00;Name=Os01t0928200-00;Locus_id=Os01g0928200;Note=Conserved hypothetical protein.;Transcript_evidence=CT834799 (DDBJ%2C Best hit);ORF_evidence=B6TUM4 (UniProt);TENOR=Os01t0928200-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	40737484	40737524	.	+	.	Parent=Os01t0928200-00
Chr01	irgsp1_rep	CDS	40737525	40737662	.	+	0	Parent=Os01t0928200-00
Chr01	irgsp1_rep	three_prime_UTR	40737663	40737911	.	+	.	Parent=Os01t0928200-00
Chr01	irgsp1_rep	mRNA	40739117	40743667	.	+	.	ID=Os01t0928300-01;Name=Os01t0928300-01;Locus_id=Os01g0928300;Note=Prefoldin domain containing protein.;Transcript_evidence=AK068358 (DDBJ%2C Best hit);ORF_evidence=B9EW06 (UniProt);NIAS_FLcDNA=J013146G08;Expression=AK068358;TENOR=Os01t0928300-01;KEGG=Os01t0928300-01
Chr01	irgsp1_rep	five_prime_UTR	40739117	40739148	.	+	.	Parent=Os01t0928300-01
Chr01	irgsp1_rep	CDS	40739149	40739355	.	+	0	Parent=Os01t0928300-01
Chr01	irgsp1_rep	CDS	40739475	40739534	.	+	0	Parent=Os01t0928300-01
Chr01	irgsp1_rep	CDS	40739643	40739735	.	+	0	Parent=Os01t0928300-01
Chr01	irgsp1_rep	three_prime_UTR	40739736	40739800	.	+	.	Parent=Os01t0928300-01
Chr01	irgsp1_rep	three_prime_UTR	40740539	40740602	.	+	.	Parent=Os01t0928300-01
Chr01	irgsp1_rep	three_prime_UTR	40741036	40741331	.	+	.	Parent=Os01t0928300-01
Chr01	irgsp1_rep	three_prime_UTR	40741440	40741544	.	+	.	Parent=Os01t0928300-01
Chr01	irgsp1_rep	three_prime_UTR	40741671	40741707	.	+	.	Parent=Os01t0928300-01
Chr01	irgsp1_rep	three_prime_UTR	40741950	40742044	.	+	.	Parent=Os01t0928300-01
Chr01	irgsp1_rep	three_prime_UTR	40742867	40742923	.	+	.	Parent=Os01t0928300-01
Chr01	irgsp1_rep	three_prime_UTR	40743002	40743079	.	+	.	Parent=Os01t0928300-01
Chr01	irgsp1_rep	three_prime_UTR	40743168	40743667	.	+	.	Parent=Os01t0928300-01
Chr01	irgsp1_rep	mRNA	40744003	40750822	.	-	.	ID=Os01t0928400-01;Name=Os01t0928400-01;Locus_id=Os01g0928400;Note=Conserved hypothetical protein.;Transcript_evidence=AK111454 (DDBJ%2C Best hit);ORF_evidence=B8A8V0 (UniProt);NIAS_FLcDNA=002-183-C02;Expression=AK111454;TENOR=Os01t0928400-01;KEGG=Os01t0928400-01
Chr01	irgsp1_rep	five_prime_UTR	40750400	40750822	.	-	.	Parent=Os01t0928400-01
Chr01	irgsp1_rep	CDS	40749786	40750399	.	-	0	Parent=Os01t0928400-01
Chr01	irgsp1_rep	CDS	40749332	40749382	.	-	1	Parent=Os01t0928400-01
Chr01	irgsp1_rep	CDS	40748751	40748826	.	-	1	Parent=Os01t0928400-01
Chr01	irgsp1_rep	CDS	40744297	40744407	.	-	0	Parent=Os01t0928400-01
Chr01	irgsp1_rep	three_prime_UTR	40744003	40744296	.	-	.	Parent=Os01t0928400-01
Chr01	irgsp1_rep	mRNA	40759332	40763911	.	-	.	ID=Os01t0928600-01;Name=Os01t0928600-01;Locus_id=Os01g0928600;Note=Serine palmitoyltransferase.;Transcript_evidence=AK241034 (DDBJ%2C Best hit);ORF_evidence=B6SMZ5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity (GO:0016740),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferase%2C class-II%2C pyridoxal-phosphate binding site (IPR001917),Aminotransferase%2C class I/classII (IPR004839),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J065058O11;TENOR=Os01t0928600-01;KEGG=Os01t0928600-01 (EC:2.3.1.50)
Chr01	irgsp1_rep	five_prime_UTR	40763790	40763911	.	-	.	Parent=Os01t0928600-01
Chr01	irgsp1_rep	CDS	40763631	40763789	.	-	0	Parent=Os01t0928600-01
Chr01	irgsp1_rep	CDS	40763165	40763230	.	-	0	Parent=Os01t0928600-01
Chr01	irgsp1_rep	CDS	40762317	40762405	.	-	0	Parent=Os01t0928600-01
Chr01	irgsp1_rep	CDS	40762028	40762173	.	-	1	Parent=Os01t0928600-01
Chr01	irgsp1_rep	CDS	40761801	40761925	.	-	2	Parent=Os01t0928600-01
Chr01	irgsp1_rep	CDS	40761572	40761665	.	-	0	Parent=Os01t0928600-01
Chr01	irgsp1_rep	CDS	40761315	40761478	.	-	2	Parent=Os01t0928600-01
Chr01	irgsp1_rep	CDS	40760625	40760786	.	-	0	Parent=Os01t0928600-01
Chr01	irgsp1_rep	CDS	40760397	40760523	.	-	0	Parent=Os01t0928600-01
Chr01	irgsp1_rep	CDS	40760142	40760308	.	-	2	Parent=Os01t0928600-01
Chr01	irgsp1_rep	CDS	40759834	40759941	.	-	0	Parent=Os01t0928600-01
Chr01	irgsp1_rep	CDS	40759635	40759727	.	-	0	Parent=Os01t0928600-01
Chr01	irgsp1_rep	three_prime_UTR	40759332	40759634	.	-	.	Parent=Os01t0928600-01
Chr01	irgsp1_rep	mRNA	40767170	40771614	.	-	.	ID=Os01t0928700-00;Name=Os01t0928700-00;Locus_id=Os01g0928700;CGSNL Gene Symbol=LCB2A2;Oryzabase Gene Symbol Synonym(s)=OsLCB2a2%2C LCB2a2;Oryzabase Gene Name Synonym(s)=serine palmitoyltransferase subunit LCBa2%2C serine palmitoyltransferase LCBa2 subunit;Note=Similar to Serine palmitoyltransferase.;Transcript_evidence=ab initio prediction;ORF_evidence=B6SMZ5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity (GO:0016740),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferase%2C class-II%2C pyridoxal-phosphate binding site (IPR001917),Aminotransferase%2C class I/classII (IPR004839),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);Oryzabase=21528;TENOR=Os01t0928700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	40771465	40771614	.	-	0	Parent=Os01t0928700-00
Chr01	irgsp1_rep	CDS	40771094	40771159	.	-	0	Parent=Os01t0928700-00
Chr01	irgsp1_rep	CDS	40770437	40770525	.	-	0	Parent=Os01t0928700-00
Chr01	irgsp1_rep	CDS	40769945	40770090	.	-	1	Parent=Os01t0928700-00
Chr01	irgsp1_rep	CDS	40769377	40769501	.	-	2	Parent=Os01t0928700-00
Chr01	irgsp1_rep	CDS	40769202	40769295	.	-	0	Parent=Os01t0928700-00
Chr01	irgsp1_rep	CDS	40768876	40769039	.	-	2	Parent=Os01t0928700-00
Chr01	irgsp1_rep	CDS	40768526	40768687	.	-	0	Parent=Os01t0928700-00
Chr01	irgsp1_rep	CDS	40768311	40768437	.	-	0	Parent=Os01t0928700-00
Chr01	irgsp1_rep	CDS	40767613	40767779	.	-	2	Parent=Os01t0928700-00
Chr01	irgsp1_rep	CDS	40767369	40767476	.	-	0	Parent=Os01t0928700-00
Chr01	irgsp1_rep	CDS	40767170	40767265	.	-	0	Parent=Os01t0928700-00
Chr01	irgsp1_rep	mRNA	40774498	40778604	.	-	.	ID=Os01t0928800-01;Name=Os01t0928800-01;Locus_id=Os01g0928800;CGSNL Gene Symbol=LCB2A1;Oryzabase Gene Symbol Synonym(s)=OsLCB2a1%2C LCB2a1;Oryzabase Gene Name Synonym(s)=serine palmitoyltransferase subunit LCBa1%2C serine palmitoyltransferase LCBa1 subunit;Note=Similar to Serine palmitoyltransferase.;Transcript_evidence=AK120617 (DDBJ%2C Best hit);ORF_evidence=B6SMZ5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity (GO:0016740),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferase%2C class-II%2C pyridoxal-phosphate binding site (IPR001917),Aminotransferase%2C class I/classII (IPR004839),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J013152B12;Oryzabase=21527;Expression=AK120617;TENOR=Os01t0928800-01;KEGG=Os01t0928800-01 (EC:2.3.1.50)
Chr01	irgsp1_rep	five_prime_UTR	40778099	40778604	.	-	.	Parent=Os01t0928800-01
Chr01	irgsp1_rep	CDS	40777973	40778098	.	-	0	Parent=Os01t0928800-01
Chr01	irgsp1_rep	CDS	40777806	40777871	.	-	0	Parent=Os01t0928800-01
Chr01	irgsp1_rep	CDS	40777002	40777090	.	-	0	Parent=Os01t0928800-01
Chr01	irgsp1_rep	CDS	40776751	40776896	.	-	1	Parent=Os01t0928800-01
Chr01	irgsp1_rep	CDS	40776533	40776657	.	-	2	Parent=Os01t0928800-01
Chr01	irgsp1_rep	CDS	40776363	40776456	.	-	0	Parent=Os01t0928800-01
Chr01	irgsp1_rep	CDS	40776108	40776271	.	-	2	Parent=Os01t0928800-01
Chr01	irgsp1_rep	CDS	40775779	40775940	.	-	0	Parent=Os01t0928800-01
Chr01	irgsp1_rep	CDS	40775571	40775697	.	-	0	Parent=Os01t0928800-01
Chr01	irgsp1_rep	CDS	40775330	40775496	.	-	2	Parent=Os01t0928800-01
Chr01	irgsp1_rep	CDS	40775096	40775203	.	-	0	Parent=Os01t0928800-01
Chr01	irgsp1_rep	CDS	40774893	40774988	.	-	0	Parent=Os01t0928800-01
Chr01	irgsp1_rep	three_prime_UTR	40774498	40774892	.	-	.	Parent=Os01t0928800-01
Chr01	irgsp1_rep	mRNA	40780442	40784609	.	+	.	ID=Os01t0929000-01;Name=Os01t0929000-01;Locus_id=Os01g0929000;Note=Similar to aminopeptidase.;Transcript_evidence=AK073334 (DDBJ%2C Best hit);ORF_evidence=NP_196898.5 (RefSeq);InterPro=Protein of unknown function DUF3754 (IPR022227);NIAS_FLcDNA=J033024D22;Expression=AK073334;TENOR=Os01t0929000-01;KEGG=Os01t0929000-01
Chr01	irgsp1_rep	five_prime_UTR	40780442	40780606	.	+	.	Parent=Os01t0929000-01
Chr01	irgsp1_rep	CDS	40780607	40780721	.	+	0	Parent=Os01t0929000-01
Chr01	irgsp1_rep	CDS	40781125	40781219	.	+	2	Parent=Os01t0929000-01
Chr01	irgsp1_rep	CDS	40781371	40781484	.	+	0	Parent=Os01t0929000-01
Chr01	irgsp1_rep	CDS	40781625	40781729	.	+	0	Parent=Os01t0929000-01
Chr01	irgsp1_rep	CDS	40781820	40781891	.	+	0	Parent=Os01t0929000-01
Chr01	irgsp1_rep	CDS	40782148	40782260	.	+	0	Parent=Os01t0929000-01
Chr01	irgsp1_rep	CDS	40782346	40782480	.	+	1	Parent=Os01t0929000-01
Chr01	irgsp1_rep	CDS	40782582	40782650	.	+	1	Parent=Os01t0929000-01
Chr01	irgsp1_rep	CDS	40782781	40782868	.	+	1	Parent=Os01t0929000-01
Chr01	irgsp1_rep	CDS	40782968	40783039	.	+	0	Parent=Os01t0929000-01
Chr01	irgsp1_rep	CDS	40783117	40783217	.	+	0	Parent=Os01t0929000-01
Chr01	irgsp1_rep	CDS	40783477	40783594	.	+	1	Parent=Os01t0929000-01
Chr01	irgsp1_rep	CDS	40783695	40783754	.	+	0	Parent=Os01t0929000-01
Chr01	irgsp1_rep	CDS	40783847	40783957	.	+	0	Parent=Os01t0929000-01
Chr01	irgsp1_rep	CDS	40784140	40784238	.	+	0	Parent=Os01t0929000-01
Chr01	irgsp1_rep	three_prime_UTR	40784239	40784261	.	+	.	Parent=Os01t0929000-01
Chr01	irgsp1_rep	three_prime_UTR	40784377	40784609	.	+	.	Parent=Os01t0929000-01
Chr01	irgsp1_rep	mRNA	40785129	40786723	.	+	.	ID=Os01t0929100-01;Name=Os01t0929100-01;Locus_id=Os01g0929100;Note=Conserved hypothetical protein.;Transcript_evidence=AK105788 (DDBJ%2C Best hit);ORF_evidence=Q5JK31 (UniProt);NIAS_FLcDNA=001-202-H02;Expression=AK105788;TENOR=Os01t0929100-01;KEGG=Os01t0929100-01
Chr01	irgsp1_rep	five_prime_UTR	40785129	40785244	.	+	.	Parent=Os01t0929100-01
Chr01	irgsp1_rep	CDS	40785245	40785268	.	+	0	Parent=Os01t0929100-01
Chr01	irgsp1_rep	CDS	40785360	40785446	.	+	0	Parent=Os01t0929100-01
Chr01	irgsp1_rep	CDS	40785612	40785666	.	+	0	Parent=Os01t0929100-01
Chr01	irgsp1_rep	CDS	40785795	40785863	.	+	2	Parent=Os01t0929100-01
Chr01	irgsp1_rep	CDS	40786006	40786064	.	+	2	Parent=Os01t0929100-01
Chr01	irgsp1_rep	CDS	40786167	40786403	.	+	0	Parent=Os01t0929100-01
Chr01	irgsp1_rep	three_prime_UTR	40786404	40786723	.	+	.	Parent=Os01t0929100-01
Chr01	irgsp1_rep	mRNA	40785129	40786742	.	+	.	ID=Os01t0929100-02;Name=Os01t0929100-02;Locus_id=Os01g0929100;Note=Similar to predicted protein.;Transcript_evidence=AK059975 (DDBJ%2C Best hit),AK059880 (DDBJ%2C Best hit),AK067717 (DDBJ%2C Best hit);ORF_evidence=B9EW08 (UniProt);NIAS_FLcDNA=006-212-A09,006-207-H04,J013117F22;TENOR=Os01t0929100-02
Chr01	irgsp1_rep	five_prime_UTR	40785129	40785164	.	+	.	Parent=Os01t0929100-02
Chr01	irgsp1_rep	CDS	40785165	40785446	.	+	0	Parent=Os01t0929100-02
Chr01	irgsp1_rep	CDS	40785612	40785666	.	+	0	Parent=Os01t0929100-02
Chr01	irgsp1_rep	CDS	40785795	40785863	.	+	2	Parent=Os01t0929100-02
Chr01	irgsp1_rep	CDS	40786006	40786064	.	+	2	Parent=Os01t0929100-02
Chr01	irgsp1_rep	CDS	40786167	40786403	.	+	0	Parent=Os01t0929100-02
Chr01	irgsp1_rep	three_prime_UTR	40786404	40786742	.	+	.	Parent=Os01t0929100-02
Chr01	irgsp1_rep	mRNA	40786287	40786541	.	+	.	ID=Os01t0929100-03;Name=Os01t0929100-03;Locus_id=Os01g0929100;Note=Similar to predicted protein.;Transcript_evidence=AK060605 (DDBJ%2C Best hit);ORF_evidence=Q5JK31 (UniProt);NIAS_FLcDNA=001-025-B09;Expression=AK060605;TENOR=Os01t0929100-03;KEGG=Os01t0929100-03
Chr01	irgsp1_rep	CDS	40786287	40786403	.	+	0	Parent=Os01t0929100-03
Chr01	irgsp1_rep	three_prime_UTR	40786404	40786541	.	+	.	Parent=Os01t0929100-03
Chr01	irgsp1_rep	mRNA	40786741	40790609	.	-	.	ID=Os01t0929200-01;Name=Os01t0929200-01;Locus_id=Os01g0929200;CGSNL Gene Symbol=RLCK53;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 53;Oryzabase Gene Symbol Synonym(s)=OsRLCK53;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 53;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK242279 (DDBJ%2C Best hit);ORF_evidence=C6ZRX2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J075188E15;Oryzabase=18770;TENOR=Os01t0929200-01;KEGG=Os01t0929200-01
Chr01	irgsp1_rep	five_prime_UTR	40790499	40790609	.	-	.	Parent=Os01t0929200-01
Chr01	irgsp1_rep	five_prime_UTR	40790128	40790347	.	-	.	Parent=Os01t0929200-01
Chr01	irgsp1_rep	five_prime_UTR	40788891	40788972	.	-	.	Parent=Os01t0929200-01
Chr01	irgsp1_rep	CDS	40788740	40788890	.	-	0	Parent=Os01t0929200-01
Chr01	irgsp1_rep	CDS	40788471	40788652	.	-	2	Parent=Os01t0929200-01
Chr01	irgsp1_rep	CDS	40788126	40788252	.	-	0	Parent=Os01t0929200-01
Chr01	irgsp1_rep	CDS	40787963	40788034	.	-	2	Parent=Os01t0929200-01
Chr01	irgsp1_rep	CDS	40787639	40787822	.	-	2	Parent=Os01t0929200-01
Chr01	irgsp1_rep	CDS	40787375	40787489	.	-	1	Parent=Os01t0929200-01
Chr01	irgsp1_rep	CDS	40786977	40787240	.	-	0	Parent=Os01t0929200-01
Chr01	irgsp1_rep	three_prime_UTR	40786741	40786976	.	-	.	Parent=Os01t0929200-01
Chr01	irgsp1_rep	mRNA	40794124	40796977	.	-	.	ID=Os01t0929500-01;Name=Os01t0929500-01;Locus_id=Os01g0929500;Note=Similar to predicted protein.;Transcript_evidence=AK120263 (DDBJ%2C Best hit);ORF_evidence=E6NU09 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013047B18;Expression=AK120263;TENOR=Os01t0929500-01;KEGG=Os01t0929500-01
Chr01	irgsp1_rep	five_prime_UTR	40796951	40796977	.	-	.	Parent=Os01t0929500-01
Chr01	irgsp1_rep	CDS	40796555	40796950	.	-	0	Parent=Os01t0929500-01
Chr01	irgsp1_rep	CDS	40795877	40796071	.	-	0	Parent=Os01t0929500-01
Chr01	irgsp1_rep	CDS	40795364	40795765	.	-	0	Parent=Os01t0929500-01
Chr01	irgsp1_rep	three_prime_UTR	40794124	40795363	.	-	.	Parent=Os01t0929500-01
Chr01	irgsp1_rep	mRNA	40794264	40796975	.	-	.	ID=Os01t0929500-02;Name=Os01t0929500-02;Locus_id=Os01g0929500;Note=Similar to Carbonyl reductase-like protein.;Transcript_evidence=AK111399 (DDBJ%2C Best hit);ORF_evidence=E6NU09 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=002-182-D09;Expression=AK111399;TENOR=Os01t0929500-02;KEGG=Os01t0929500-02
Chr01	irgsp1_rep	five_prime_UTR	40796974	40796975	.	-	.	Parent=Os01t0929500-02
Chr01	irgsp1_rep	CDS	40796922	40796973	.	-	0	Parent=Os01t0929500-02
Chr01	irgsp1_rep	CDS	40796555	40796808	.	-	2	Parent=Os01t0929500-02
Chr01	irgsp1_rep	CDS	40795877	40796071	.	-	0	Parent=Os01t0929500-02
Chr01	irgsp1_rep	CDS	40795364	40795765	.	-	0	Parent=Os01t0929500-02
Chr01	irgsp1_rep	three_prime_UTR	40794264	40795363	.	-	.	Parent=Os01t0929500-02
Chr01	irgsp1_rep	mRNA	40797941	40798525	.	-	.	ID=Os01t0929600-01;Name=Os01t0929600-01;Locus_id=Os01g0929600;CGSNL Gene Symbol=RTS;CGSNL Gene Name=RICE TAPETUM SPECIFIC GENE;Oryzabase Gene Symbol Synonym(s)=RTS%2C RTS2;Oryzabase Gene Name Synonym(s)=rice tapetum specific gene%2C rice tapetum-specific;Note=Similar to Anther specific.;Transcript_evidence=AK070978 (DDBJ%2C Best hit);ORF_evidence=Q40629 (UniProt);NIAS_FLcDNA=J023073G24;Oryzabase=6413;Expression=AK070978;TENOR=Os01t0929600-01;KEGG=Os01t0929600-01
Chr01	irgsp1_rep	five_prime_UTR	40798447	40798525	.	-	.	Parent=Os01t0929600-01
Chr01	irgsp1_rep	CDS	40798171	40798446	.	-	0	Parent=Os01t0929600-01
Chr01	irgsp1_rep	three_prime_UTR	40797941	40798170	.	-	.	Parent=Os01t0929600-01
Chr01	irgsp1_rep	mRNA	40799614	40800553	.	+	.	ID=Os01t0929800-00;Name=Os01t0929800-00;Locus_id=Os01g0929800;Note=Hypothetical gene.;Transcript_evidence=CT837487 (DDBJ%2C Best hit);ORF_evidence=GeneMark;TENOR=Os01t0929800-00;KEGG=Os01t0929800-00
Chr01	irgsp1_rep	five_prime_UTR	40799614	40799615	.	+	.	Parent=Os01t0929800-00
Chr01	irgsp1_rep	CDS	40799616	40799825	.	+	0	Parent=Os01t0929800-00
Chr01	irgsp1_rep	three_prime_UTR	40799826	40800553	.	+	.	Parent=Os01t0929800-00
Chr01	irgsp1_rep	mRNA	40803915	40804415	.	+	.	ID=Os01t0929967-00;Name=Os01t0929967-00;Locus_id=Os01g0929967;Note=Conserved hypothetical protein.;Transcript_evidence=FP096191 (DDBJ);ORF_evidence=NP_001049763.1 (RefSeq);TENOR=Os01t0929967-00
Chr01	irgsp1_rep	five_prime_UTR	40803915	40803991	.	+	.	Parent=Os01t0929967-00
Chr01	irgsp1_rep	CDS	40803992	40804106	.	+	0	Parent=Os01t0929967-00
Chr01	irgsp1_rep	CDS	40804185	40804384	.	+	2	Parent=Os01t0929967-00
Chr01	irgsp1_rep	three_prime_UTR	40804385	40804415	.	+	.	Parent=Os01t0929967-00
Chr01	irgsp1_rep	mRNA	40807159	40808380	.	+	.	ID=Os01t0930000-01;Name=Os01t0930000-01;Locus_id=Os01g0930000;Note=Similar to CM0545.330.nc protein.;Transcript_evidence=AK065852 (DDBJ%2C Best hit);ORF_evidence=B0BLA9 (UniProt);NIAS_FLcDNA=J013041M02;Expression=AK065852;TENOR=Os01t0930000-01;KEGG=Os01t0930000-01
Chr01	irgsp1_rep	five_prime_UTR	40807159	40807187	.	+	.	Parent=Os01t0930000-01
Chr01	irgsp1_rep	CDS	40807188	40807451	.	+	0	Parent=Os01t0930000-01
Chr01	irgsp1_rep	CDS	40807583	40807619	.	+	0	Parent=Os01t0930000-01
Chr01	irgsp1_rep	CDS	40807920	40808003	.	+	2	Parent=Os01t0930000-01
Chr01	irgsp1_rep	CDS	40808204	40808256	.	+	2	Parent=Os01t0930000-01
Chr01	irgsp1_rep	three_prime_UTR	40808257	40808380	.	+	.	Parent=Os01t0930000-01
Chr01	irgsp1_rep	mRNA	40812546	40814128	.	+	.	ID=Os01t0930200-01;Name=Os01t0930200-01;Locus_id=Os01g0930200;Note=Conserved hypothetical protein.;Transcript_evidence=AK120760 (DDBJ%2C Best hit);ORF_evidence=A2WYN9 (UniProt);NIAS_FLcDNA=J023007F18;Expression=AK120760;TENOR=Os01t0930200-01;KEGG=Os01t0930200-01
Chr01	irgsp1_rep	five_prime_UTR	40812546	40812836	.	+	.	Parent=Os01t0930200-01
Chr01	irgsp1_rep	CDS	40812837	40813022	.	+	0	Parent=Os01t0930200-01
Chr01	irgsp1_rep	CDS	40813234	40813566	.	+	0	Parent=Os01t0930200-01
Chr01	irgsp1_rep	three_prime_UTR	40813567	40814128	.	+	.	Parent=Os01t0930200-01
Chr01	irgsp1_rep	mRNA	40822990	40830946	.	-	.	ID=Os01t0930300-01;Name=Os01t0930300-01;Locus_id=Os01g0930300;Note=RNA-directed DNA polymerase (reverse transcriptase)%2C related domain containing protein.;Transcript_evidence=AK103050 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J033117H03;Expression=AK103050;TENOR=Os01t0930300-01;KEGG=Os01t0930300-01
Chr01	irgsp1_rep	five_prime_UTR	40830815	40830946	.	-	.	Parent=Os01t0930300-01
Chr01	irgsp1_rep	five_prime_UTR	40830629	40830718	.	-	.	Parent=Os01t0930300-01
Chr01	irgsp1_rep	five_prime_UTR	40825335	40825431	.	-	.	Parent=Os01t0930300-01
Chr01	irgsp1_rep	five_prime_UTR	40824376	40824534	.	-	.	Parent=Os01t0930300-01
Chr01	irgsp1_rep	five_prime_UTR	40823979	40824301	.	-	.	Parent=Os01t0930300-01
Chr01	irgsp1_rep	CDS	40823010	40823978	.	-	0	Parent=Os01t0930300-01
Chr01	irgsp1_rep	three_prime_UTR	40822990	40823009	.	-	.	Parent=Os01t0930300-01
Chr01	irgsp1_rep	mRNA	40825678	40830191	.	+	.	ID=Os01t0930400-01;Name=Os01t0930400-01;Locus_id=Os01g0930400;RAP-DB Gene Symbol Synonym(s)=HAK5%2C OsHAK5;RAP-DB Gene Name Synonym(s)=HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 5%2C High-affinity Potassium(K+) Transporter 5%2C Potassium transporter 5%2C high affinity K transporter 5;CGSNL Gene Symbol=HAK5;CGSNL Gene Name=HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 5;Oryzabase Gene Symbol Synonym(s)=OsHAK5%2C FCO13%2C OsFCO13;Oryzabase Gene Name Synonym(s)=High-affinity Potassium(K+) Transporter 5%2C Potassium transporter 5%2C high affinity K transporter 5%2C Functioning in Cesium Over-transport 13;Note=Potassium transporter%2C High-affinity K acquisition%2C Root-to-shoot K transport%2C K-regulated salt tolerance;Transcript_evidence=AK241580;ORF_evidence=Q5JK32;GO=Biological Process: potassium ion transmembrane transport (GO:0071805),Molecular Function: potassium ion transmembrane transporter activity (GO:0015079),Cellular Component: membrane (GO:0016020);InterPro=Potassium transporter (IPR003855);Manual Curation=November 18%2C 2014;Literature_PMID=25157029,19302972;Oryzabase=8659;TENOR=Os01t0930400-00
Chr01	irgsp1_rep	five_prime_UTR	40825678	40825717	.	+	.	Parent=Os01t0930400-01
Chr01	irgsp1_rep	CDS	40825718	40825882	.	+	0	Parent=Os01t0930400-01
Chr01	irgsp1_rep	CDS	40826135	40826357	.	+	0	Parent=Os01t0930400-01
Chr01	irgsp1_rep	CDS	40826656	40826904	.	+	2	Parent=Os01t0930400-01
Chr01	irgsp1_rep	CDS	40827096	40827146	.	+	2	Parent=Os01t0930400-01
Chr01	irgsp1_rep	CDS	40827252	40827512	.	+	2	Parent=Os01t0930400-01
Chr01	irgsp1_rep	CDS	40827635	40827687	.	+	2	Parent=Os01t0930400-01
Chr01	irgsp1_rep	CDS	40827875	40827989	.	+	0	Parent=Os01t0930400-01
Chr01	irgsp1_rep	CDS	40828083	40828337	.	+	2	Parent=Os01t0930400-01
Chr01	irgsp1_rep	CDS	40828921	40829894	.	+	2	Parent=Os01t0930400-01
Chr01	irgsp1_rep	three_prime_UTR	40829895	40830191	.	+	.	Parent=Os01t0930400-01
Chr01	irgsp1_rep	mRNA	40833605	40834861	.	-	.	ID=Os01t0930500-01;Name=Os01t0930500-01;Locus_id=Os01g0930500;Note=Conserved hypothetical protein.;Transcript_evidence=AK107569 (DDBJ%2C Best hit);ORF_evidence=A2WYP1 (UniProt);NIAS_FLcDNA=002-130-D01;Expression=AK107569;TENOR=Os01t0930500-01;KEGG=Os01t0930500-01
Chr01	irgsp1_rep	five_prime_UTR	40834627	40834861	.	-	.	Parent=Os01t0930500-01
Chr01	irgsp1_rep	CDS	40833928	40834626	.	-	0	Parent=Os01t0930500-01
Chr01	irgsp1_rep	three_prime_UTR	40833605	40833927	.	-	.	Parent=Os01t0930500-01
Chr01	irgsp1_rep	mRNA	40842288	40848191	.	+	.	ID=Os01t0930800-01;Name=Os01t0930800-01;Locus_id=Os01g0930800;CGSNL Gene Symbol=BGLU5;CGSNL Gene Name=BETA-GLUCOSIDASE 5;Oryzabase Gene Symbol Synonym(s)=Os1bglu5%2C Os1Bglu5%2C 1bglu5;Oryzabase Gene Name Synonym(s)=beta-glucosidase 5;Note=Glycoside hydrolase%2C family 1 protein.;Transcript_evidence=AK119221 (DDBJ%2C Best hit),AK070499 (DDBJ%2C Best hit);ORF_evidence=Q5JK35 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 1%2C active site (IPR018120);NIAS_FLcDNA=001-046-H04,J023054O08;Oryzabase=12079;TENOR=Os01t0930800-01
Chr01	irgsp1_rep	five_prime_UTR	40842288	40842289	.	+	.	Parent=Os01t0930800-01
Chr01	irgsp1_rep	CDS	40842290	40842427	.	+	0	Parent=Os01t0930800-01
Chr01	irgsp1_rep	CDS	40842575	40842638	.	+	0	Parent=Os01t0930800-01
Chr01	irgsp1_rep	CDS	40842974	40843032	.	+	2	Parent=Os01t0930800-01
Chr01	irgsp1_rep	CDS	40843243	40843318	.	+	0	Parent=Os01t0930800-01
Chr01	irgsp1_rep	CDS	40843416	40843487	.	+	2	Parent=Os01t0930800-01
Chr01	irgsp1_rep	CDS	40845282	40845369	.	+	2	Parent=Os01t0930800-01
Chr01	irgsp1_rep	CDS	40845880	40846138	.	+	1	Parent=Os01t0930800-01
Chr01	irgsp1_rep	CDS	40846224	40846339	.	+	0	Parent=Os01t0930800-01
Chr01	irgsp1_rep	CDS	40846427	40846641	.	+	1	Parent=Os01t0930800-01
Chr01	irgsp1_rep	CDS	40847088	40847116	.	+	2	Parent=Os01t0930800-01
Chr01	irgsp1_rep	CDS	40847334	40847435	.	+	0	Parent=Os01t0930800-01
Chr01	irgsp1_rep	CDS	40847550	40847638	.	+	0	Parent=Os01t0930800-01
Chr01	irgsp1_rep	CDS	40847751	40847985	.	+	1	Parent=Os01t0930800-01
Chr01	irgsp1_rep	three_prime_UTR	40847986	40848191	.	+	.	Parent=Os01t0930800-01
Chr01	irgsp1_rep	mRNA	40849226	40850197	.	+	.	ID=Os01t0930900-00;Name=Os01t0930900-00;Locus_id=Os01g0930900;Note=Similar to Short chain alcohol dehydrogenase-like.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001151188.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);TENOR=Os01t0930900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	40849226	40849317	.	+	0	Parent=Os01t0930900-00
Chr01	irgsp1_rep	CDS	40849444	40850197	.	+	1	Parent=Os01t0930900-00
Chr01	irgsp1_rep	mRNA	40851828	40852154	.	+	.	ID=Os01t0930950-00;Name=Os01t0930950-00;Locus_id=Os01g0930950;Note=NAD(P)-binding domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2WYP5 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NAD(P)-binding domain (IPR016040);TENOR=Os01t0930950-00
Chr01	irgsp1_rep	CDS	40851828	40852154	.	+	0	Parent=Os01t0930950-00
Chr01	irgsp1_rep	mRNA	40852489	40852947	.	+	.	ID=Os01t0931000-00;Name=Os01t0931000-00;Locus_id=Os01g0931000;Note=Similar to tropinone reductase 2.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001151188.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);TENOR=Os01t0931000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	40852489	40852947	.	+	0	Parent=Os01t0931000-00
Chr01	irgsp1_rep	mRNA	40858427	40861827	.	-	.	ID=Os01t0931100-01;Name=Os01t0931100-01;Locus_id=Os01g0931100;Note=Conserved hypothetical protein.;Transcript_evidence=AK068780 (DDBJ%2C Best hit);ORF_evidence=B9EW11 (UniProt);NIAS_FLcDNA=J013159E17;TENOR=Os01t0931100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	40861808	40861827	.	-	.	Parent=Os01t0931100-01
Chr01	irgsp1_rep	CDS	40861470	40861807	.	-	0	Parent=Os01t0931100-01
Chr01	irgsp1_rep	CDS	40861382	40861385	.	-	1	Parent=Os01t0931100-01
Chr01	irgsp1_rep	three_prime_UTR	40861248	40861381	.	-	.	Parent=Os01t0931100-01
Chr01	irgsp1_rep	three_prime_UTR	40860899	40860980	.	-	.	Parent=Os01t0931100-01
Chr01	irgsp1_rep	three_prime_UTR	40860610	40860802	.	-	.	Parent=Os01t0931100-01
Chr01	irgsp1_rep	three_prime_UTR	40860405	40860522	.	-	.	Parent=Os01t0931100-01
Chr01	irgsp1_rep	three_prime_UTR	40860111	40860227	.	-	.	Parent=Os01t0931100-01
Chr01	irgsp1_rep	three_prime_UTR	40859925	40860016	.	-	.	Parent=Os01t0931100-01
Chr01	irgsp1_rep	three_prime_UTR	40859768	40859834	.	-	.	Parent=Os01t0931100-01
Chr01	irgsp1_rep	three_prime_UTR	40859595	40859676	.	-	.	Parent=Os01t0931100-01
Chr01	irgsp1_rep	three_prime_UTR	40859422	40859513	.	-	.	Parent=Os01t0931100-01
Chr01	irgsp1_rep	three_prime_UTR	40858993	40859136	.	-	.	Parent=Os01t0931100-01
Chr01	irgsp1_rep	three_prime_UTR	40858427	40858888	.	-	.	Parent=Os01t0931100-01
Chr01	irgsp1_rep	mRNA	40858575	40861675	.	-	.	ID=Os01t0931100-02;Name=Os01t0931100-02;Locus_id=Os01g0931100;Note=Protein of unknown function DUF1624 domain containing protein.;Transcript_evidence=AK059213 (DDBJ%2C Best hit);ORF_evidence=B9EW11 (UniProt);InterPro=Protein of unknown function DUF1624 (IPR012429);NIAS_FLcDNA=001-024-C05;Expression=AK059213;TENOR=Os01t0931100-02;KEGG=Os01t0931100-02 (EC:2.3.1.78)
Chr01	irgsp1_rep	five_prime_UTR	40861665	40861675	.	-	.	Parent=Os01t0931100-02
Chr01	irgsp1_rep	CDS	40861470	40861664	.	-	0	Parent=Os01t0931100-02
Chr01	irgsp1_rep	CDS	40861248	40861385	.	-	0	Parent=Os01t0931100-02
Chr01	irgsp1_rep	CDS	40860899	40860980	.	-	0	Parent=Os01t0931100-02
Chr01	irgsp1_rep	CDS	40860610	40860802	.	-	2	Parent=Os01t0931100-02
Chr01	irgsp1_rep	CDS	40860405	40860522	.	-	1	Parent=Os01t0931100-02
Chr01	irgsp1_rep	CDS	40860111	40860227	.	-	0	Parent=Os01t0931100-02
Chr01	irgsp1_rep	CDS	40859925	40860016	.	-	0	Parent=Os01t0931100-02
Chr01	irgsp1_rep	CDS	40859768	40859834	.	-	1	Parent=Os01t0931100-02
Chr01	irgsp1_rep	CDS	40859595	40859676	.	-	0	Parent=Os01t0931100-02
Chr01	irgsp1_rep	CDS	40859422	40859513	.	-	2	Parent=Os01t0931100-02
Chr01	irgsp1_rep	CDS	40858993	40859136	.	-	0	Parent=Os01t0931100-02
Chr01	irgsp1_rep	CDS	40858742	40858888	.	-	0	Parent=Os01t0931100-02
Chr01	irgsp1_rep	three_prime_UTR	40858575	40858741	.	-	.	Parent=Os01t0931100-02
Chr01	irgsp1_rep	mRNA	40862786	40864367	.	-	.	ID=Os01t0931200-01;Name=Os01t0931200-01;Locus_id=Os01g0931200;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=AK063586 (DDBJ%2C Best hit);ORF_evidence=B8A8R9 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),CLASP N-terminal domain (IPR024395);NIAS_FLcDNA=001-118-A06;Expression=AK063586;TENOR=Os01t0931200-01;KEGG=Os01t0931200-01
Chr01	irgsp1_rep	five_prime_UTR	40864282	40864367	.	-	.	Parent=Os01t0931200-01
Chr01	irgsp1_rep	CDS	40863944	40864281	.	-	0	Parent=Os01t0931200-01
Chr01	irgsp1_rep	CDS	40863692	40863836	.	-	1	Parent=Os01t0931200-01
Chr01	irgsp1_rep	CDS	40863138	40863608	.	-	0	Parent=Os01t0931200-01
Chr01	irgsp1_rep	three_prime_UTR	40862786	40863137	.	-	.	Parent=Os01t0931200-01
Chr01	irgsp1_rep	mRNA	40864915	40868356	.	-	.	ID=Os01t0931300-01;Name=Os01t0931300-01;Locus_id=Os01g0931300;Note=Tafazzin family protein.;Transcript_evidence=AK068196 (DDBJ%2C Best hit);ORF_evidence=NP_001150818.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Tafazzin (IPR000872),Phospholipid/glycerol acyltransferase (IPR002123);NIAS_FLcDNA=J013136M02;Expression=AK068196;TENOR=Os01t0931300-01;KEGG=Os01t0931300-01
Chr01	irgsp1_rep	five_prime_UTR	40868231	40868356	.	-	.	Parent=Os01t0931300-01
Chr01	irgsp1_rep	CDS	40867936	40868230	.	-	0	Parent=Os01t0931300-01
Chr01	irgsp1_rep	CDS	40867439	40867557	.	-	2	Parent=Os01t0931300-01
Chr01	irgsp1_rep	CDS	40867300	40867365	.	-	0	Parent=Os01t0931300-01
Chr01	irgsp1_rep	CDS	40866836	40867033	.	-	0	Parent=Os01t0931300-01
Chr01	irgsp1_rep	CDS	40866182	40866300	.	-	0	Parent=Os01t0931300-01
Chr01	irgsp1_rep	CDS	40865906	40866011	.	-	1	Parent=Os01t0931300-01
Chr01	irgsp1_rep	CDS	40865185	40865805	.	-	0	Parent=Os01t0931300-01
Chr01	irgsp1_rep	three_prime_UTR	40864915	40865184	.	-	.	Parent=Os01t0931300-01
Chr01	irgsp1_rep	mRNA	40864921	40868344	.	-	.	ID=Os01t0931300-02;Name=Os01t0931300-02;Locus_id=Os01g0931300;Note=Tafazzin domain containing protein.;Transcript_evidence=AK099213 (DDBJ%2C Best hit);ORF_evidence=NP_001150818.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Tafazzin (IPR000872),Phospholipid/glycerol acyltransferase (IPR002123);NIAS_FLcDNA=J013084E08;Expression=AK099213;TENOR=Os01t0931300-02;KEGG=Os01t0931300-02
Chr01	irgsp1_rep	five_prime_UTR	40868231	40868344	.	-	.	Parent=Os01t0931300-02
Chr01	irgsp1_rep	CDS	40867936	40868230	.	-	0	Parent=Os01t0931300-02
Chr01	irgsp1_rep	CDS	40867439	40867557	.	-	2	Parent=Os01t0931300-02
Chr01	irgsp1_rep	CDS	40867300	40867365	.	-	0	Parent=Os01t0931300-02
Chr01	irgsp1_rep	CDS	40866836	40867033	.	-	0	Parent=Os01t0931300-02
Chr01	irgsp1_rep	CDS	40866182	40866300	.	-	0	Parent=Os01t0931300-02
Chr01	irgsp1_rep	CDS	40865906	40865958	.	-	1	Parent=Os01t0931300-02
Chr01	irgsp1_rep	CDS	40865786	40865805	.	-	2	Parent=Os01t0931300-02
Chr01	irgsp1_rep	three_prime_UTR	40864921	40865785	.	-	.	Parent=Os01t0931300-02
Chr01	irgsp1_rep	mRNA	40868710	40871916	.	-	.	ID=Os01t0931400-01;Name=Os01t0931400-01;Locus_id=Os01g0931400;Oryzabase Gene Symbol Synonym(s)=ROX1;Oryzabase Gene Name Synonym(s)=Regulator of XA21-1;Note=Similar to thiamin pyrophosphokinase 1.;Transcript_evidence=AK064797 (DDBJ%2C Best hit);ORF_evidence=NP_001147243.1 (RefSeq);GO=Biological Process: thiamine diphosphate biosynthetic process (GO:0009229),Molecular Function: thiamine diphosphokinase activity (GO:0004788),Molecular Function: ATP binding (GO:0005524);InterPro=Thiamin pyrophosphokinase%2C catalytic domain (IPR007371);NIAS_FLcDNA=J013000D02;Oryzabase=9788;TENOR=Os01t0931400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	40871603	40871916	.	-	.	Parent=Os01t0931400-01
Chr01	irgsp1_rep	CDS	40871446	40871602	.	-	0	Parent=Os01t0931400-01
Chr01	irgsp1_rep	CDS	40871227	40871327	.	-	2	Parent=Os01t0931400-01
Chr01	irgsp1_rep	three_prime_UTR	40870328	40871226	.	-	.	Parent=Os01t0931400-01
Chr01	irgsp1_rep	three_prime_UTR	40869454	40869555	.	-	.	Parent=Os01t0931400-01
Chr01	irgsp1_rep	three_prime_UTR	40869110	40869359	.	-	.	Parent=Os01t0931400-01
Chr01	irgsp1_rep	three_prime_UTR	40868710	40869022	.	-	.	Parent=Os01t0931400-01
Chr01	irgsp1_rep	mRNA	40868709	40871884	.	-	.	ID=Os01t0931400-02;Name=Os01t0931400-02;Locus_id=Os01g0931400;Oryzabase Gene Symbol Synonym(s)=ROX1;Oryzabase Gene Name Synonym(s)=Regulator of XA21-1;Note=Thiamin pyrophosphokinase%2C eukaryotic domain containing protein.;Transcript_evidence=AK105048 (DDBJ%2C Best hit);ORF_evidence=NP_001147243.1 (RefSeq);GO=Biological Process: thiamine metabolic process (GO:0006772),Biological Process: thiamine diphosphate biosynthetic process (GO:0009229),Molecular Function: thiamine diphosphokinase activity (GO:0004788),Molecular Function: ATP binding (GO:0005524);InterPro=Thiamin pyrophosphokinase (IPR006282),Thiamin pyrophosphokinase%2C catalytic domain (IPR007371),Thiamin pyrophosphokinase%2C vitamin B1-binding domain (IPR007373),Thiamin pyrophosphokinase%2C eukaryotic (IPR016966);NIAS_FLcDNA=001-040-H01;Oryzabase=9788;Expression=AK105048;TENOR=Os01t0931400-02;KEGG=Os01t0931400-02 (EC:2.7.6.2)
Chr01	irgsp1_rep	five_prime_UTR	40871603	40871884	.	-	.	Parent=Os01t0931400-02
Chr01	irgsp1_rep	CDS	40871446	40871602	.	-	0	Parent=Os01t0931400-02
Chr01	irgsp1_rep	CDS	40871231	40871327	.	-	2	Parent=Os01t0931400-02
Chr01	irgsp1_rep	CDS	40870328	40870400	.	-	1	Parent=Os01t0931400-02
Chr01	irgsp1_rep	CDS	40869454	40869555	.	-	0	Parent=Os01t0931400-02
Chr01	irgsp1_rep	CDS	40869110	40869359	.	-	0	Parent=Os01t0931400-02
Chr01	irgsp1_rep	CDS	40868907	40869022	.	-	2	Parent=Os01t0931400-02
Chr01	irgsp1_rep	three_prime_UTR	40868709	40868906	.	-	.	Parent=Os01t0931400-02
Chr01	irgsp1_rep	mRNA	40875375	40876354	.	-	.	ID=Os01t0931600-00;Name=Os01t0931600-00;Locus_id=Os01g0931600;Note=Tubby%2C C-terminal domain containing protein.;Transcript_evidence=tplb0061i13 (Wheat FLcDNA);ORF_evidence=Q5JMI3 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237);InterPro=Tubby%2C C-terminal (IPR000007),Initiation factor 2B-related (IPR000649),Protein of unknown function DUF567 (IPR007612);Oryzabase=22703;TENOR=Os01t0931600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	40876290	40876354	.	-	.	Parent=Os01t0931600-00
Chr01	irgsp1_rep	CDS	40876029	40876289	.	-	0	Parent=Os01t0931600-00
Chr01	irgsp1_rep	CDS	40875375	40875764	.	-	0	Parent=Os01t0931600-00
Chr01	irgsp1_rep	mRNA	40880104	40881181	.	+	.	ID=Os01t0931700-00;Name=Os01t0931700-00;Locus_id=Os01g0931700;Note=Tubby%2C C-terminal domain containing protein.;Transcript_evidence=AK330336 (DDBJ);ORF_evidence=Q5JMI2 (UniProt);InterPro=Tubby%2C C-terminal (IPR000007),Protein of unknown function DUF567 (IPR007612);TENOR=Os01t0931700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	40880104	40880487	.	+	0	Parent=Os01t0931700-00
Chr01	irgsp1_rep	CDS	40880802	40880912	.	+	0	Parent=Os01t0931700-00
Chr01	irgsp1_rep	three_prime_UTR	40880913	40881181	.	+	.	Parent=Os01t0931700-00
Chr01	irgsp1_rep	mRNA	40884982	40891619	.	+	.	ID=Os01t0932000-00;Name=Os01t0932000-00;Locus_id=Os01g0932000;Note=Hypothetical conserved gene.;Transcript_evidence=AK287861 (DDBJ%2C Secondary hit);ORF_evidence=Q5JMH8 (UniProt);InterPro=Domain of unknown function DUF223 (IPR003871),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);TENOR=Os01t0932000-00;KEGG=Os01t0932000-00
Chr01	irgsp1_rep	five_prime_UTR	40884982	40885136	.	+	.	Parent=Os01t0932000-00
Chr01	irgsp1_rep	five_prime_UTR	40885216	40885292	.	+	.	Parent=Os01t0932000-00
Chr01	irgsp1_rep	five_prime_UTR	40885394	40885418	.	+	.	Parent=Os01t0932000-00
Chr01	irgsp1_rep	CDS	40885419	40885449	.	+	0	Parent=Os01t0932000-00
Chr01	irgsp1_rep	CDS	40888554	40888708	.	+	2	Parent=Os01t0932000-00
Chr01	irgsp1_rep	CDS	40888798	40889071	.	+	0	Parent=Os01t0932000-00
Chr01	irgsp1_rep	CDS	40889155	40889261	.	+	2	Parent=Os01t0932000-00
Chr01	irgsp1_rep	three_prime_UTR	40889262	40889564	.	+	.	Parent=Os01t0932000-00
Chr01	irgsp1_rep	three_prime_UTR	40889635	40889713	.	+	.	Parent=Os01t0932000-00
Chr01	irgsp1_rep	three_prime_UTR	40889803	40890168	.	+	.	Parent=Os01t0932000-00
Chr01	irgsp1_rep	three_prime_UTR	40890247	40890787	.	+	.	Parent=Os01t0932000-00
Chr01	irgsp1_rep	three_prime_UTR	40890874	40890953	.	+	.	Parent=Os01t0932000-00
Chr01	irgsp1_rep	three_prime_UTR	40891034	40891114	.	+	.	Parent=Os01t0932000-00
Chr01	irgsp1_rep	three_prime_UTR	40891205	40891619	.	+	.	Parent=Os01t0932000-00
Chr01	irgsp1_rep	mRNA	40902494	40907438	.	-	.	ID=Os01t0932500-01;Name=Os01t0932500-01;Locus_id=Os01g0932500;CGSNL Gene Symbol=HAK6;CGSNL Gene Name=HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 6;Oryzabase Gene Symbol Synonym(s)=OsHAK6%2C OsSTA42;Oryzabase Gene Name Synonym(s)=High-affinity Potassium(K+) Transporter 6%2C Potassium transporter 6.;Note=Potassium uptake protein%2C kup domain containing protein.;Transcript_evidence=AK107477 (DDBJ%2C Best hit);ORF_evidence=Q5JMH0 (UniProt);GO=Biological Process: potassium ion transmembrane transport (GO:0071805),Cellular Component: membrane (GO:0016020),Molecular Function: potassium ion transmembrane transporter activity (GO:0015079);InterPro=K+ potassium transporter (IPR003855);NIAS_FLcDNA=002-129-B10;Oryzabase=8660;Expression=AK107477;TENOR=Os01t0932500-01;KEGG=Os01t0932500-01
Chr01	irgsp1_rep	five_prime_UTR	40907339	40907438	.	-	.	Parent=Os01t0932500-01
Chr01	irgsp1_rep	CDS	40907135	40907338	.	-	0	Parent=Os01t0932500-01
Chr01	irgsp1_rep	CDS	40906805	40907027	.	-	0	Parent=Os01t0932500-01
Chr01	irgsp1_rep	CDS	40906296	40906541	.	-	2	Parent=Os01t0932500-01
Chr01	irgsp1_rep	CDS	40905482	40905532	.	-	2	Parent=Os01t0932500-01
Chr01	irgsp1_rep	CDS	40905097	40905357	.	-	2	Parent=Os01t0932500-01
Chr01	irgsp1_rep	CDS	40904880	40904932	.	-	2	Parent=Os01t0932500-01
Chr01	irgsp1_rep	CDS	40903963	40904332	.	-	0	Parent=Os01t0932500-01
Chr01	irgsp1_rep	CDS	40902557	40903395	.	-	2	Parent=Os01t0932500-01
Chr01	irgsp1_rep	three_prime_UTR	40902494	40902556	.	-	.	Parent=Os01t0932500-01
Chr01	irgsp1_rep	mRNA	40902506	40903502	.	+	.	ID=Os01t0932525-00;Name=Os01t0932525-00;Locus_id=Os01g0932525;Note=Hypothetical gene.;Transcript_evidence=CT833279 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os01t0932525-00;KEGG=Os01t0932525-00
Chr01	irgsp1_rep	five_prime_UTR	40902506	40902595	.	+	.	Parent=Os01t0932525-00
Chr01	irgsp1_rep	CDS	40902596	40903411	.	+	0	Parent=Os01t0932525-00
Chr01	irgsp1_rep	three_prime_UTR	40903412	40903502	.	+	.	Parent=Os01t0932525-00
Chr01	irgsp1_rep	mRNA	40909710	40914137	.	-	.	ID=Os01t0932550-00;Name=Os01t0932550-00;Locus_id=Os01g0932550;Note=Similar to Mitochondrial import inner membrane translocase subunit Tim13.;Transcript_evidence=CT837760 (DDBJ%2C Best hit);ORF_evidence=Q9XGY5 (UniProt);GO=Biological Process: protein targeting to mitochondrion (GO:0006626),Biological Process: protein import into mitochondrial inner membrane (GO:0045039),Cellular Component: mitochondrial intermembrane space protein transporter complex (GO:0042719);InterPro=Mitochondrial inner membrane translocase complex%2C Tim8/9/10/13-zinc finger-like (IPR004217);TENOR=Os01t0932550-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	40913991	40914137	.	-	.	Parent=Os01t0932550-00
Chr01	irgsp1_rep	five_prime_UTR	40913752	40913911	.	-	.	Parent=Os01t0932550-00
Chr01	irgsp1_rep	five_prime_UTR	40912651	40912959	.	-	.	Parent=Os01t0932550-00
Chr01	irgsp1_rep	five_prime_UTR	40911587	40911634	.	-	.	Parent=Os01t0932550-00
Chr01	irgsp1_rep	CDS	40911572	40911586	.	-	0	Parent=Os01t0932550-00
Chr01	irgsp1_rep	CDS	40909878	40910027	.	-	0	Parent=Os01t0932550-00
Chr01	irgsp1_rep	three_prime_UTR	40909710	40909877	.	-	.	Parent=Os01t0932550-00
Chr01	irgsp1_rep	mRNA	40915386	40920746	.	+	.	ID=Os01t0932600-01;Name=Os01t0932600-01;Locus_id=Os01g0932600;Note=BTB domain containing protein.;Transcript_evidence=AK072340 (DDBJ%2C Best hit);ORF_evidence=NP_193319.6 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069);NIAS_FLcDNA=J023048I08;Expression=AK072340;TENOR=Os01t0932600-01;KEGG=Os01t0932600-01
Chr01	irgsp1_rep	five_prime_UTR	40915386	40915463	.	+	.	Parent=Os01t0932600-01
Chr01	irgsp1_rep	CDS	40915464	40915735	.	+	0	Parent=Os01t0932600-01
Chr01	irgsp1_rep	CDS	40916527	40916710	.	+	1	Parent=Os01t0932600-01
Chr01	irgsp1_rep	CDS	40916788	40916856	.	+	0	Parent=Os01t0932600-01
Chr01	irgsp1_rep	CDS	40917004	40917102	.	+	0	Parent=Os01t0932600-01
Chr01	irgsp1_rep	CDS	40917640	40917719	.	+	0	Parent=Os01t0932600-01
Chr01	irgsp1_rep	CDS	40917803	40918046	.	+	1	Parent=Os01t0932600-01
Chr01	irgsp1_rep	CDS	40918198	40918596	.	+	0	Parent=Os01t0932600-01
Chr01	irgsp1_rep	CDS	40918680	40919341	.	+	0	Parent=Os01t0932600-01
Chr01	irgsp1_rep	CDS	40919678	40919762	.	+	1	Parent=Os01t0932600-01
Chr01	irgsp1_rep	CDS	40919844	40919895	.	+	0	Parent=Os01t0932600-01
Chr01	irgsp1_rep	CDS	40919977	40920026	.	+	2	Parent=Os01t0932600-01
Chr01	irgsp1_rep	CDS	40920091	40920138	.	+	0	Parent=Os01t0932600-01
Chr01	irgsp1_rep	CDS	40920231	40920407	.	+	0	Parent=Os01t0932600-01
Chr01	irgsp1_rep	three_prime_UTR	40920408	40920746	.	+	.	Parent=Os01t0932600-01
Chr01	irgsp1_rep	mRNA	40921634	40922363	.	-	.	ID=Os01t0932650-01;Name=Os01t0932650-01;Locus_id=Os01g0932650;Note=Hypothetical protein.;Transcript_evidence=AK105157 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-103-H01;Expression=AK105157;TENOR=Os01t0932650-01;KEGG=Os01t0932650-01
Chr01	irgsp1_rep	five_prime_UTR	40922361	40922363	.	-	.	Parent=Os01t0932650-01
Chr01	irgsp1_rep	CDS	40922049	40922360	.	-	0	Parent=Os01t0932650-01
Chr01	irgsp1_rep	three_prime_UTR	40921634	40922048	.	-	.	Parent=Os01t0932650-01
Chr01	irgsp1_rep	mRNA	40921878	40922318	.	+	.	ID=Os01t0932700-00;Name=Os01t0932700-00;Locus_id=Os01g0932700;Oryzabase Gene Symbol Synonym(s)=DEFL1%2C OsDEFL1%2C OsDf-01%2C Df-01;Oryzabase Gene Name Synonym(s)=defensin-like 1;Note=Gamma thionin family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001172723.1 (RefSeq);GO=Biological Process: defense response (GO:0006952);InterPro=Knottin (IPR003614),Gamma thionin (IPR008176);Oryzabase=21071;TENOR=Os01t0932700-00;KEGG=Os01t0932700-00
Chr01	irgsp1_rep	CDS	40921878	40921956	.	+	0	Parent=Os01t0932700-00
Chr01	irgsp1_rep	CDS	40922056	40922318	.	+	2	Parent=Os01t0932700-00
Chr01	irgsp1_rep	mRNA	40923718	40924053	.	-	.	ID=Os01t0932950-00;Name=Os01t0932950-00;Locus_id=Os01g0932950;CGSNL Gene Symbol=RALF7;CGSNL Gene Name=RAPID ALKALIZATION FACTOR 7;Oryzabase Gene Symbol Synonym(s)=OsRALF-7%2C OsRALF7%2C RALF-7;Oryzabase Gene Name Synonym(s)=Rapid alkalization factor 7;Note=Similar to RALFL33.;Transcript_evidence=ab initio prediction;ORF_evidence=B6SJC1 (UniProt);InterPro=Twin-arginine translocation pathway%2C signal sequence (IPR006311),Rapid ALkalinization Factor (IPR008801);Oryzabase=21111;TENOR=Os01t0932950-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	40923718	40924053	.	-	0	Parent=Os01t0932950-00
Chr01	irgsp1_rep	mRNA	40927131	40928334	.	-	.	ID=Os01t0933075-01;Name=Os01t0933075-01;Locus_id=Os01g0933075;Note=Hypothetical protein.;Transcript_evidence=AK241026 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065057D06;TENOR=Os01t0933075-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	40927854	40928334	.	-	.	Parent=Os01t0933075-01
Chr01	irgsp1_rep	CDS	40927263	40927853	.	-	0	Parent=Os01t0933075-01
Chr01	irgsp1_rep	three_prime_UTR	40927131	40927262	.	-	.	Parent=Os01t0933075-01
Chr01	irgsp1_rep	mRNA	40930756	40932359	.	-	.	ID=Os01t0933200-00;Name=Os01t0933200-00;Locus_id=Os01g0933200;CGSNL Gene Symbol=HMP9;CGSNL Gene Name=HEAVY METAL-ASSOCIATED PROTEIN 9;Oryzabase Gene Symbol Synonym(s)=OsHMP9%2C OsHMP09;Oryzabase Gene Name Synonym(s)=Heavy metal-associated protein 9;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001147140.1 (RefSeq);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);Oryzabase=23534;TENOR=Os01t0933200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	40932327	40932359	.	-	0	Parent=Os01t0933200-00
Chr01	irgsp1_rep	CDS	40931982	40932057	.	-	0	Parent=Os01t0933200-00
Chr01	irgsp1_rep	CDS	40930756	40931657	.	-	2	Parent=Os01t0933200-00
Chr01	irgsp1_rep	mRNA	40933062	40935029	.	+	.	ID=Os01t0933300-01;Name=Os01t0933300-01;Locus_id=Os01g0933300;Note=Non-protein coding transcript.;Transcript_evidence=AK060386 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-009-F06;TENOR=Os01t0933300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	exon	40933062	40934033	.	+	.	Parent=Os01t0933300-01
Chr01	irgsp1_rep	exon	40934681	40935029	.	+	.	Parent=Os01t0933300-01
Chr01	irgsp1_rep	mRNA	40938631	40940996	.	-	.	ID=Os01t0933400-01;Name=Os01t0933400-01;Locus_id=Os01g0933400;Note=Similar to NADP-dependant malate dehydrogenase (Fragment).;Transcript_evidence=AK069767 (DDBJ%2C Best hit);ORF_evidence=Q8H0N9 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023028B05;TENOR=Os01t0933400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	40940307	40940996	.	-	.	Parent=Os01t0933400-01
Chr01	irgsp1_rep	five_prime_UTR	40939142	40940188	.	-	.	Parent=Os01t0933400-01
Chr01	irgsp1_rep	CDS	40938976	40939141	.	-	0	Parent=Os01t0933400-01
Chr01	irgsp1_rep	CDS	40938891	40938904	.	-	2	Parent=Os01t0933400-01
Chr01	irgsp1_rep	three_prime_UTR	40938631	40938890	.	-	.	Parent=Os01t0933400-01
Chr01	irgsp1_rep	mRNA	40938570	40940587	.	-	.	ID=Os01t0933400-02;Name=Os01t0933400-02;Locus_id=Os01g0933400;Note=Similar to NADP-dependant malate dehydrogenase (Fragment).;Transcript_evidence=AK070303 (DDBJ%2C Best hit);ORF_evidence=Q8H0N9 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023048O17;Expression=AK070303;TENOR=Os01t0933400-02;KEGG=Os01t0933400-02
Chr01	irgsp1_rep	five_prime_UTR	40940546	40940587	.	-	.	Parent=Os01t0933400-02
Chr01	irgsp1_rep	five_prime_UTR	40940307	40940433	.	-	.	Parent=Os01t0933400-02
Chr01	irgsp1_rep	five_prime_UTR	40940073	40940188	.	-	.	Parent=Os01t0933400-02
Chr01	irgsp1_rep	five_prime_UTR	40939588	40939742	.	-	.	Parent=Os01t0933400-02
Chr01	irgsp1_rep	five_prime_UTR	40939142	40939180	.	-	.	Parent=Os01t0933400-02
Chr01	irgsp1_rep	CDS	40938976	40939141	.	-	0	Parent=Os01t0933400-02
Chr01	irgsp1_rep	CDS	40938891	40938904	.	-	2	Parent=Os01t0933400-02
Chr01	irgsp1_rep	three_prime_UTR	40938570	40938890	.	-	.	Parent=Os01t0933400-02
Chr01	irgsp1_rep	mRNA	40942545	40942986	.	-	.	ID=Os01t0933500-00;Name=Os01t0933500-00;Locus_id=Os01g0933500;CGSNL Gene Symbol=FPFL2;CGSNL Gene Name=FPF1-LIKE PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsFPFL2;Oryzabase Gene Name Synonym(s)=FPF1-like protein 2%2C FPF1-like 2%2C flowering-promoting factor 1-like 2;Note=Similar to FLP1.;Transcript_evidence=AY304538 (DDBJ%2C Best hit);ORF_evidence=B6TP05 (UniProt);Oryzabase=23445;Expression=AY304538;TENOR=Os01t0933500-00;KEGG=Os01t0933500-00
Chr01	irgsp1_rep	five_prime_UTR	40942943	40942986	.	-	.	Parent=Os01t0933500-00
Chr01	irgsp1_rep	CDS	40942559	40942942	.	-	0	Parent=Os01t0933500-00
Chr01	irgsp1_rep	three_prime_UTR	40942545	40942558	.	-	.	Parent=Os01t0933500-00
Chr01	irgsp1_rep	mRNA	40947072	40949536	.	-	.	ID=Os01t0933600-01;Name=Os01t0933600-01;Locus_id=Os01g0933600;Note=Similar to cDNA clone:J023013D17%2C full insert sequence.;Transcript_evidence=AK067040 (DDBJ%2C Best hit);ORF_evidence=B7EG78 (UniProt);NIAS_FLcDNA=J013089P11;TENOR=Os01t0933600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	40949536	40949536	.	-	.	Parent=Os01t0933600-01
Chr01	irgsp1_rep	CDS	40948837	40949535	.	-	0	Parent=Os01t0933600-01
Chr01	irgsp1_rep	three_prime_UTR	40948755	40948836	.	-	.	Parent=Os01t0933600-01
Chr01	irgsp1_rep	three_prime_UTR	40948364	40948524	.	-	.	Parent=Os01t0933600-01
Chr01	irgsp1_rep	three_prime_UTR	40947845	40947922	.	-	.	Parent=Os01t0933600-01
Chr01	irgsp1_rep	three_prime_UTR	40947072	40947684	.	-	.	Parent=Os01t0933600-01
Chr01	irgsp1_rep	mRNA	40962722	40964240	.	-	.	ID=Os01t0933900-01;Name=Os01t0933900-01;Locus_id=Os01g0933900;CGSNL Gene Symbol=GSTF4;CGSNL Gene Name=PHI GLUTATHIONE S-TRANSFERASE 4;Oryzabase Gene Symbol Synonym(s)=OsGSTF4;Note=Similar to Glutathione transferase III(B) (EC 2.5.1.18).;Transcript_evidence=AK059985 (DDBJ%2C Best hit);ORF_evidence=NP_001105111.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=006-212-G06;Oryzabase=9506;TENOR=Os01t0933900-01
Chr01	irgsp1_rep	five_prime_UTR	40964085	40964240	.	-	.	Parent=Os01t0933900-01
Chr01	irgsp1_rep	CDS	40963923	40964084	.	-	0	Parent=Os01t0933900-01
Chr01	irgsp1_rep	CDS	40963764	40963812	.	-	0	Parent=Os01t0933900-01
Chr01	irgsp1_rep	CDS	40962863	40963317	.	-	2	Parent=Os01t0933900-01
Chr01	irgsp1_rep	three_prime_UTR	40962722	40962862	.	-	.	Parent=Os01t0933900-01
Chr01	irgsp1_rep	mRNA	40962739	40964165	.	-	.	ID=Os01t0933900-02;Name=Os01t0933900-02;Locus_id=Os01g0933900;CGSNL Gene Symbol=GSTF4;CGSNL Gene Name=PHI GLUTATHIONE S-TRANSFERASE 4;Oryzabase Gene Symbol Synonym(s)=OsGSTF4;Note=Similar to Glutathione transferase III(B) (EC 2.5.1.18).;Transcript_evidence=AK103927 (DDBJ%2C Best hit);ORF_evidence=NP_001105111.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=001-013-D04;Oryzabase=9506;TENOR=Os01t0933900-02
Chr01	irgsp1_rep	five_prime_UTR	40964085	40964165	.	-	.	Parent=Os01t0933900-02
Chr01	irgsp1_rep	CDS	40963923	40964084	.	-	0	Parent=Os01t0933900-02
Chr01	irgsp1_rep	CDS	40963764	40963812	.	-	0	Parent=Os01t0933900-02
Chr01	irgsp1_rep	CDS	40962863	40963317	.	-	2	Parent=Os01t0933900-02
Chr01	irgsp1_rep	three_prime_UTR	40962739	40962862	.	-	.	Parent=Os01t0933900-02
Chr01	irgsp1_rep	mRNA	40962822	40963323	.	+	.	ID=Os01t0933950-00;Name=Os01t0933950-00;Locus_id=Os01g0933950;Note=Hypothetical gene.;Transcript_evidence=EU947713 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0933950-00
Chr01	irgsp1_rep	five_prime_UTR	40962822	40962823	.	+	.	Parent=Os01t0933950-00
Chr01	irgsp1_rep	CDS	40962824	40963323	.	+	0	Parent=Os01t0933950-00
Chr01	irgsp1_rep	mRNA	40966688	40971055	.	-	.	ID=Os01t0934000-01;Name=Os01t0934000-01;Locus_id=Os01g0934000;CGSNL Gene Symbol=ATG18C;CGSNL Gene Name=AUTOPHAGY ASSOCIATED GENE 18C;Oryzabase Gene Symbol Synonym(s)=OsATG18c%2C OsWD40-30;Oryzabase Gene Name Synonym(s)=autophagy 18c;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK072525 (DDBJ%2C Best hit);ORF_evidence=B6SUF7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781);NIAS_FLcDNA=J023129D09;Oryzabase=9662;Expression=AK072525;TENOR=Os01t0934000-01;KEGG=Os01t0934000-01
Chr01	irgsp1_rep	five_prime_UTR	40971003	40971055	.	-	.	Parent=Os01t0934000-01
Chr01	irgsp1_rep	CDS	40970055	40971002	.	-	0	Parent=Os01t0934000-01
Chr01	irgsp1_rep	CDS	40967779	40967980	.	-	0	Parent=Os01t0934000-01
Chr01	irgsp1_rep	CDS	40967104	40967230	.	-	2	Parent=Os01t0934000-01
Chr01	irgsp1_rep	CDS	40966920	40967016	.	-	1	Parent=Os01t0934000-01
Chr01	irgsp1_rep	three_prime_UTR	40966688	40966919	.	-	.	Parent=Os01t0934000-01
Chr01	irgsp1_rep	mRNA	40966739	40971020	.	-	.	ID=Os01t0934000-02;Name=Os01t0934000-02;Locus_id=Os01g0934000;CGSNL Gene Symbol=ATG18C;CGSNL Gene Name=AUTOPHAGY ASSOCIATED GENE 18C;Oryzabase Gene Symbol Synonym(s)=OsATG18c%2C OsWD40-30;Oryzabase Gene Name Synonym(s)=autophagy 18c;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK060679 (DDBJ%2C Best hit);ORF_evidence=B6SUF7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781);NIAS_FLcDNA=001-029-C10;Oryzabase=9662;Expression=AK060679;TENOR=Os01t0934000-02;KEGG=Os01t0934000-02
Chr01	irgsp1_rep	five_prime_UTR	40971003	40971020	.	-	.	Parent=Os01t0934000-02
Chr01	irgsp1_rep	CDS	40970055	40971002	.	-	0	Parent=Os01t0934000-02
Chr01	irgsp1_rep	CDS	40967779	40967980	.	-	0	Parent=Os01t0934000-02
Chr01	irgsp1_rep	CDS	40967104	40967230	.	-	2	Parent=Os01t0934000-02
Chr01	irgsp1_rep	CDS	40966920	40967016	.	-	1	Parent=Os01t0934000-02
Chr01	irgsp1_rep	three_prime_UTR	40966739	40966919	.	-	.	Parent=Os01t0934000-02
Chr01	irgsp1_rep	mRNA	40973410	40974780	.	-	.	ID=Os01t0934100-01;Name=Os01t0934100-01;Locus_id=Os01g0934100;Note=C2 calcium-dependent membrane targeting domain containing protein.;Transcript_evidence=AK100995 (DDBJ%2C Best hit),AK120801 (DDBJ%2C Best hit);ORF_evidence=NP_001149536.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973);NIAS_FLcDNA=J023146J24,J023012M12;Expression=AK100995;TENOR=Os01t0934100-01;KEGG=Os01t0934100-01
Chr01	irgsp1_rep	five_prime_UTR	40974665	40974780	.	-	.	Parent=Os01t0934100-01
Chr01	irgsp1_rep	CDS	40973588	40974664	.	-	0	Parent=Os01t0934100-01
Chr01	irgsp1_rep	three_prime_UTR	40973410	40973587	.	-	.	Parent=Os01t0934100-01
Chr01	irgsp1_rep	mRNA	40978458	40983489	.	+	.	ID=Os01t0934200-01;Name=Os01t0934200-01;Locus_id=Os01g0934200;Note=Mitochondrial carrier protein domain containing protein.;Transcript_evidence=AK101396 (DDBJ%2C Best hit),AK069988 (DDBJ%2C Best hit);ORF_evidence=B4FIJ0 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial inner membrane (GO:0005743),Molecular Function: binding (GO:0005488);InterPro=Mitochondrial carrier protein (IPR002067),Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J033037B09,J023039I10;TENOR=Os01t0934200-01
Chr01	irgsp1_rep	five_prime_UTR	40978458	40978530	.	+	.	Parent=Os01t0934200-01
Chr01	irgsp1_rep	CDS	40978531	40978656	.	+	0	Parent=Os01t0934200-01
Chr01	irgsp1_rep	CDS	40979527	40979643	.	+	0	Parent=Os01t0934200-01
Chr01	irgsp1_rep	CDS	40980320	40980431	.	+	0	Parent=Os01t0934200-01
Chr01	irgsp1_rep	CDS	40980614	40980741	.	+	2	Parent=Os01t0934200-01
Chr01	irgsp1_rep	CDS	40981250	40981402	.	+	0	Parent=Os01t0934200-01
Chr01	irgsp1_rep	CDS	40981784	40981933	.	+	0	Parent=Os01t0934200-01
Chr01	irgsp1_rep	CDS	40982444	40982640	.	+	0	Parent=Os01t0934200-01
Chr01	irgsp1_rep	CDS	40983087	40983114	.	+	1	Parent=Os01t0934200-01
Chr01	irgsp1_rep	three_prime_UTR	40983115	40983489	.	+	.	Parent=Os01t0934200-01
Chr01	irgsp1_rep	mRNA	40984511	40992947	.	+	.	ID=Os01t0934300-01;Name=Os01t0934300-01;Locus_id=Os01g0934300;Note=Similar to Flowering-time protein isoform alpha.;Transcript_evidence=AK066698 (DDBJ%2C Best hit);ORF_evidence=Q9SWE0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);NIAS_FLcDNA=J013073H18;TENOR=Os01t0934300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	40984511	40984616	.	+	.	Parent=Os01t0934300-01
Chr01	irgsp1_rep	CDS	40984617	40984805	.	+	0	Parent=Os01t0934300-01
Chr01	irgsp1_rep	CDS	40985815	40985842	.	+	0	Parent=Os01t0934300-01
Chr01	irgsp1_rep	CDS	40986086	40986216	.	+	2	Parent=Os01t0934300-01
Chr01	irgsp1_rep	CDS	40986582	40987075	.	+	0	Parent=Os01t0934300-01
Chr01	irgsp1_rep	CDS	40987157	40987250	.	+	1	Parent=Os01t0934300-01
Chr01	irgsp1_rep	CDS	40987327	40987420	.	+	0	Parent=Os01t0934300-01
Chr01	irgsp1_rep	CDS	40987978	40988021	.	+	2	Parent=Os01t0934300-01
Chr01	irgsp1_rep	three_prime_UTR	40988022	40988085	.	+	.	Parent=Os01t0934300-01
Chr01	irgsp1_rep	three_prime_UTR	40988191	40988242	.	+	.	Parent=Os01t0934300-01
Chr01	irgsp1_rep	three_prime_UTR	40988357	40988397	.	+	.	Parent=Os01t0934300-01
Chr01	irgsp1_rep	three_prime_UTR	40988522	40988601	.	+	.	Parent=Os01t0934300-01
Chr01	irgsp1_rep	three_prime_UTR	40989131	40989577	.	+	.	Parent=Os01t0934300-01
Chr01	irgsp1_rep	three_prime_UTR	40990846	40991444	.	+	.	Parent=Os01t0934300-01
Chr01	irgsp1_rep	three_prime_UTR	40991527	40992947	.	+	.	Parent=Os01t0934300-01
Chr01	irgsp1_rep	mRNA	40984531	40992142	.	+	.	ID=Os01t0934300-02;Name=Os01t0934300-02;Locus_id=Os01g0934300;Note=Similar to Flowering-time protein isoform alpha.;Transcript_evidence=AK072640 (DDBJ%2C Best hit);ORF_evidence=Q9SWE0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);NIAS_FLcDNA=J023133P13;TENOR=Os01t0934300-02
Chr01	irgsp1_rep	five_prime_UTR	40984531	40984616	.	+	.	Parent=Os01t0934300-02
Chr01	irgsp1_rep	CDS	40984617	40984805	.	+	0	Parent=Os01t0934300-02
Chr01	irgsp1_rep	CDS	40985815	40985842	.	+	0	Parent=Os01t0934300-02
Chr01	irgsp1_rep	CDS	40986086	40986216	.	+	2	Parent=Os01t0934300-02
Chr01	irgsp1_rep	CDS	40986582	40987075	.	+	0	Parent=Os01t0934300-02
Chr01	irgsp1_rep	CDS	40987157	40987250	.	+	1	Parent=Os01t0934300-02
Chr01	irgsp1_rep	CDS	40987327	40987420	.	+	0	Parent=Os01t0934300-02
Chr01	irgsp1_rep	CDS	40987983	40988085	.	+	2	Parent=Os01t0934300-02
Chr01	irgsp1_rep	CDS	40988191	40988242	.	+	1	Parent=Os01t0934300-02
Chr01	irgsp1_rep	CDS	40988357	40988397	.	+	0	Parent=Os01t0934300-02
Chr01	irgsp1_rep	CDS	40988522	40988601	.	+	1	Parent=Os01t0934300-02
Chr01	irgsp1_rep	CDS	40989131	40989577	.	+	2	Parent=Os01t0934300-02
Chr01	irgsp1_rep	CDS	40990846	40991444	.	+	2	Parent=Os01t0934300-02
Chr01	irgsp1_rep	CDS	40991527	40992142	.	+	0	Parent=Os01t0934300-02
Chr01	irgsp1_rep	mRNA	40988364	40992954	.	+	.	ID=Os01t0934300-03;Name=Os01t0934300-03;Locus_id=Os01g0934300;Note=Similar to Flowering-time protein isoform alpha.;Transcript_evidence=AK070074 (DDBJ%2C Best hit);ORF_evidence=Q9SWE0 (UniProt);NIAS_FLcDNA=J023043J20;Expression=AK070074;TENOR=Os01t0934300-03;KEGG=Os01t0934300-03
Chr01	irgsp1_rep	five_prime_UTR	40988364	40988365	.	+	.	Parent=Os01t0934300-03
Chr01	irgsp1_rep	CDS	40988366	40988397	.	+	0	Parent=Os01t0934300-03
Chr01	irgsp1_rep	CDS	40988522	40988601	.	+	1	Parent=Os01t0934300-03
Chr01	irgsp1_rep	CDS	40989131	40989577	.	+	2	Parent=Os01t0934300-03
Chr01	irgsp1_rep	CDS	40990846	40991444	.	+	2	Parent=Os01t0934300-03
Chr01	irgsp1_rep	CDS	40991527	40992681	.	+	0	Parent=Os01t0934300-03
Chr01	irgsp1_rep	three_prime_UTR	40992682	40992954	.	+	.	Parent=Os01t0934300-03
Chr01	irgsp1_rep	mRNA	40991365	40992930	.	+	.	ID=Os01t0934300-04;Name=Os01t0934300-04;Locus_id=Os01g0934300;Note=Similar to Flowering-time protein isoform alpha.;Transcript_evidence=AK101422 (DDBJ%2C Best hit);ORF_evidence=Q942Z1 (UniProt);NIAS_FLcDNA=J033038C07;Expression=AK101422;TENOR=Os01t0934300-04;KEGG=Os01t0934300-04
Chr01	irgsp1_rep	five_prime_UTR	40991365	40991366	.	+	.	Parent=Os01t0934300-04
Chr01	irgsp1_rep	CDS	40991367	40991444	.	+	0	Parent=Os01t0934300-04
Chr01	irgsp1_rep	CDS	40991527	40992681	.	+	0	Parent=Os01t0934300-04
Chr01	irgsp1_rep	three_prime_UTR	40992682	40992930	.	+	.	Parent=Os01t0934300-04
Chr01	irgsp1_rep	mRNA	40994283	40994849	.	+	.	ID=Os01t0934350-00;Name=Os01t0934350-00;Locus_id=Os01g0934350;Note=Similar to predicted protein.;Transcript_evidence=CT834970 (DDBJ%2C Best hit);ORF_evidence=NP_001154592.1 (RefSeq);TENOR=Os01t0934350-00
Chr01	irgsp1_rep	five_prime_UTR	40994283	40994302	.	+	.	Parent=Os01t0934350-00
Chr01	irgsp1_rep	CDS	40994303	40994849	.	+	0	Parent=Os01t0934350-00
Chr01	irgsp1_rep	mRNA	40996336	40997308	.	+	.	ID=Os01t0934400-01;Name=Os01t0934400-01;Locus_id=Os01g0934400;Note=Mog1/PsbP%2C alpha/beta/alpha sandwich domain containing protein.;Transcript_evidence=AK058904 (DDBJ%2C Best hit);ORF_evidence=NP_001154592.1 (RefSeq);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: oxygen evolving complex (GO:0009654),Cellular Component: extrinsic to membrane (GO:0019898),Molecular Function: calcium ion binding (GO:0005509);InterPro=Photosystem II PsbP%2C oxygen evolving complex (IPR002683),Mog1/PsbP%2C alpha/beta/alpha sandwich (IPR016123),Mog1/PsbP/DUF1795%2C alpha/beta/alpha sandwich (IPR016124);NIAS_FLcDNA=001-008-C06;Expression=AK058904;TENOR=Os01t0934400-01;KEGG=Os01t0934400-01
Chr01	irgsp1_rep	CDS	40996336	40996559	.	+	0	Parent=Os01t0934400-01
Chr01	irgsp1_rep	CDS	40996814	40997132	.	+	1	Parent=Os01t0934400-01
Chr01	irgsp1_rep	three_prime_UTR	40997133	40997308	.	+	.	Parent=Os01t0934400-01
Chr01	irgsp1_rep	mRNA	40999296	41004848	.	+	.	ID=Os01t0934500-01;Name=Os01t0934500-01;Locus_id=Os01g0934500;Note=Hypothetical protein.;Transcript_evidence=AK073211 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J033014N13;TENOR=Os01t0934500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	40999296	40999511	.	+	.	Parent=Os01t0934500-01
Chr01	irgsp1_rep	five_prime_UTR	40999651	41000025	.	+	.	Parent=Os01t0934500-01
Chr01	irgsp1_rep	five_prime_UTR	41000550	41000617	.	+	.	Parent=Os01t0934500-01
Chr01	irgsp1_rep	CDS	41000618	41000889	.	+	0	Parent=Os01t0934500-01
Chr01	irgsp1_rep	CDS	41002396	41002459	.	+	1	Parent=Os01t0934500-01
Chr01	irgsp1_rep	three_prime_UTR	41002460	41002857	.	+	.	Parent=Os01t0934500-01
Chr01	irgsp1_rep	three_prime_UTR	41003269	41003658	.	+	.	Parent=Os01t0934500-01
Chr01	irgsp1_rep	three_prime_UTR	41004149	41004236	.	+	.	Parent=Os01t0934500-01
Chr01	irgsp1_rep	three_prime_UTR	41004310	41004848	.	+	.	Parent=Os01t0934500-01
Chr01	irgsp1_rep	mRNA	40999306	41003771	.	+	.	ID=Os01t0934500-02;Name=Os01t0934500-02;Locus_id=Os01g0934500;Note=Hypothetical gene.;Transcript_evidence=AK099792 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013097E21;Expression=AK099792;TENOR=Os01t0934500-02;KEGG=Os01t0934500-02
Chr01	irgsp1_rep	five_prime_UTR	40999306	40999511	.	+	.	Parent=Os01t0934500-02
Chr01	irgsp1_rep	five_prime_UTR	40999651	41003294	.	+	.	Parent=Os01t0934500-02
Chr01	irgsp1_rep	CDS	41003295	41003720	.	+	0	Parent=Os01t0934500-02
Chr01	irgsp1_rep	three_prime_UTR	41003721	41003771	.	+	.	Parent=Os01t0934500-02
Chr01	irgsp1_rep	mRNA	40999828	41000599	.	-	.	ID=Os01t0934600-00;Name=Os01t0934600-00;Locus_id=Os01g0934600;Note=Similar to Esterase PIR7B.;Transcript_evidence=ab initio prediction;ORF_evidence=Q0JG99 (UniProt);TENOR=Os01t0934600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	41000510	41000599	.	-	0	Parent=Os01t0934600-00
Chr01	irgsp1_rep	CDS	41000311	41000394	.	-	0	Parent=Os01t0934600-00
Chr01	irgsp1_rep	CDS	40999828	41000109	.	-	0	Parent=Os01t0934600-00
Chr01	irgsp1_rep	mRNA	41002584	41003731	.	-	.	ID=Os01t0934700-01;Name=Os01t0934700-01;Locus_id=Os01g0934700;Note=Alpha/beta hydrolase fold-1 domain containing protein.;Transcript_evidence=AK072603 (DDBJ%2C Best hit);ORF_evidence=Q0JG99 (UniProt);NIAS_FLcDNA=J023131L10;Expression=AK072603;TENOR=Os01t0934700-01;KEGG=Os01t0934700-01 (EC:3.1.1.78)
Chr01	irgsp1_rep	five_prime_UTR	41003654	41003731	.	-	.	Parent=Os01t0934700-01
Chr01	irgsp1_rep	CDS	41003288	41003653	.	-	0	Parent=Os01t0934700-01
Chr01	irgsp1_rep	CDS	41003060	41003201	.	-	0	Parent=Os01t0934700-01
Chr01	irgsp1_rep	CDS	41002659	41002939	.	-	2	Parent=Os01t0934700-01
Chr01	irgsp1_rep	three_prime_UTR	41002584	41002658	.	-	.	Parent=Os01t0934700-01
Chr01	irgsp1_rep	mRNA	41004305	41005945	.	-	.	ID=Os01t0934800-00;Name=Os01t0934800-00;Locus_id=Os01g0934800;CGSNL Gene Symbol=PIR7B;CGSNL Gene Name=PYRICULARIA ORYZAE RESISTANCE R7B;Oryzabase Gene Symbol Synonym(s)=Pir7b;Oryzabase Gene Name Synonym(s)=Pyricularia oryzae resistance R7b%2C Magnaporthe grisea resistance-R7b%2C Blast resistance R7b;Note=Alpha/beta hydrolase fold-1 domain containing protein.;Transcript_evidence=Z34270 (DDBJ%2C Best hit);ORF_evidence=Q0JG99 (UniProt);Oryzabase=13071;Expression=Z34270;TENOR=Os01t0934800-00;KEGG=Os01t0934800-00 (EC:3.1.1.78)
Chr01	irgsp1_rep	five_prime_UTR	41005944	41005945	.	-	.	Parent=Os01t0934800-00
Chr01	irgsp1_rep	CDS	41005584	41005943	.	-	0	Parent=Os01t0934800-00
Chr01	irgsp1_rep	CDS	41004953	41005093	.	-	0	Parent=Os01t0934800-00
Chr01	irgsp1_rep	CDS	41004444	41004731	.	-	0	Parent=Os01t0934800-00
Chr01	irgsp1_rep	three_prime_UTR	41004305	41004443	.	-	.	Parent=Os01t0934800-00
Chr01	irgsp1_rep	mRNA	41007465	41008440	.	-	.	ID=Os01t0934900-00;Name=Os01t0934900-00;Locus_id=Os01g0934900;CGSNL Gene Symbol=PIR7A;CGSNL Gene Name=PYRICULARIA ORYZAE RESISTANCE R7A;Oryzabase Gene Symbol Synonym(s)=Pir7a;Oryzabase Gene Name Synonym(s)=Pyricularia oryzae resistance R7a%2C Magnaporthe grisea resistance-R7a%2C Blast resistance R7a;Note=Probable esterase PIR7A.;Transcript_evidence=A2WYS8 (UniProt);ORF_evidence=A2WYS8 (UniProt);Oryzabase=13072;TENOR=Os01t0934900-00
Chr01	irgsp1_rep	CDS	41008075	41008440	.	-	0	Parent=Os01t0934900-00
Chr01	irgsp1_rep	CDS	41007825	41007962	.	-	0	Parent=Os01t0934900-00
Chr01	irgsp1_rep	CDS	41007465	41007752	.	-	0	Parent=Os01t0934900-00
Chr01	irgsp1_rep	mRNA	41010333	41010895	.	-	.	ID=Os01t0934901-00;Name=Os01t0934901-00;Locus_id=Os01g0934901;Note=Non-protein coding transcript.;Transcript_evidence=EU947055 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0934901-00
Chr01	irgsp1_rep	exon	41010333	41010895	.	-	.	Parent=Os01t0934901-00
Chr01	irgsp1_rep	mRNA	41011330	41015063	.	-	.	ID=Os01t0935000-01;Name=Os01t0935000-01;Locus_id=Os01g0935000;CGSNL Gene Symbol=IDD9;CGSNL Gene Name=INDETERMINATE DOMAIN 9;Oryzabase Gene Symbol Synonym(s)=OsIDD9;Oryzabase Gene Name Synonym(s)=indeterminate domain 9;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK070390 (DDBJ%2C Best hit);ORF_evidence=D9ZIU5 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J023050E05;Oryzabase=13157;Expression=AK070390;TENOR=Os01t0935000-01;KEGG=Os01t0935000-01
Chr01	irgsp1_rep	five_prime_UTR	41014835	41015063	.	-	.	Parent=Os01t0935000-01
Chr01	irgsp1_rep	CDS	41014651	41014834	.	-	0	Parent=Os01t0935000-01
Chr01	irgsp1_rep	CDS	41012783	41013200	.	-	2	Parent=Os01t0935000-01
Chr01	irgsp1_rep	CDS	41011529	41012357	.	-	1	Parent=Os01t0935000-01
Chr01	irgsp1_rep	three_prime_UTR	41011330	41011528	.	-	.	Parent=Os01t0935000-01
Chr01	irgsp1_rep	mRNA	41012887	41013203	.	+	.	ID=Os01t0935050-00;Name=Os01t0935050-00;Locus_id=Os01g0935050;Note=Hypothetical protein.;Transcript_evidence=BT086922 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0935050-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	41012887	41013203	.	+	0	Parent=Os01t0935050-00
Chr01	irgsp1_rep	mRNA	41028860	41030025	.	-	.	ID=Os01t0935200-01;Name=Os01t0935200-01;Locus_id=Os01g0935200;CGSNL Gene Symbol=HAP3G;CGSNL Gene Name=HAP3G SUBUNIT OF CCAAT-BOX BINDING COMPLEX;Oryzabase Gene Symbol Synonym(s)=OsHAP3G%2C NF-YB%2C CBF-A%2C OsNF-YB6%2C NF-YB6%2C NFYB6;Oryzabase Gene Name Synonym(s)=NUCLEAR FACTOR-Y subunit B6%2C NUCLEAR FACTOR-Y subunit NF-YB6%2C NF-YB subunit 6%2C NF-YB family 6;Note=Histone-fold domain containing protein.;Transcript_evidence=AK242118 (DDBJ%2C Best hit);ORF_evidence=NP_182302.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: intracellular (GO:0005622),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Transcription factor%2C NFYB/HAP3%2C conserved site (IPR003956),Transcription factor%2C CBFA/NFYB%2C DNA topoisomerase (IPR003957),Transcription factor CBF/NF-Y/archaeal histone (IPR003958),Histone-fold (IPR009072);NIAS_FLcDNA=J075146M01;Oryzabase=8486;TENOR=Os01t0935200-01;KEGG=Os01t0935200-01
Chr01	irgsp1_rep	five_prime_UTR	41029918	41030025	.	-	.	Parent=Os01t0935200-01
Chr01	irgsp1_rep	CDS	41029384	41029917	.	-	0	Parent=Os01t0935200-01
Chr01	irgsp1_rep	three_prime_UTR	41028860	41029383	.	-	.	Parent=Os01t0935200-01
Chr01	irgsp1_rep	mRNA	41052368	41053946	.	+	.	ID=Os01t0935300-01;Name=Os01t0935300-01;Locus_id=Os01g0935300;Note=Similar to cullin-1.;Transcript_evidence=AK062782 (DDBJ%2C Best hit);ORF_evidence=NP_001148676.1 (RefSeq);InterPro=Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=001-107-B04;Expression=AK062782;TENOR=Os01t0935300-01;KEGG=Os01t0935300-01
Chr01	irgsp1_rep	five_prime_UTR	41052368	41052490	.	+	.	Parent=Os01t0935300-01
Chr01	irgsp1_rep	five_prime_UTR	41053456	41053481	.	+	.	Parent=Os01t0935300-01
Chr01	irgsp1_rep	CDS	41053482	41053609	.	+	0	Parent=Os01t0935300-01
Chr01	irgsp1_rep	CDS	41053709	41053817	.	+	1	Parent=Os01t0935300-01
Chr01	irgsp1_rep	three_prime_UTR	41053818	41053946	.	+	.	Parent=Os01t0935300-01
Chr01	irgsp1_rep	mRNA	41052375	41056409	.	+	.	ID=Os01t0935300-02;Name=Os01t0935300-02;Locus_id=Os01g0935300;Note=Cullin family protein.;Transcript_evidence=AK064133 (DDBJ%2C Best hit);ORF_evidence=NP_001148676.1 (RefSeq);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Cellular Component: cullin-RING ubiquitin ligase complex (GO:0031461),Molecular Function: ubiquitin protein ligase binding (GO:0031625);InterPro=Cullin%2C N-terminal (IPR001373),Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=002-102-G01;Expression=AK064133;TENOR=Os01t0935300-02;KEGG=Os01t0935300-02
Chr01	irgsp1_rep	five_prime_UTR	41052375	41052490	.	+	.	Parent=Os01t0935300-02
Chr01	irgsp1_rep	five_prime_UTR	41053456	41053481	.	+	.	Parent=Os01t0935300-02
Chr01	irgsp1_rep	CDS	41053482	41053609	.	+	0	Parent=Os01t0935300-02
Chr01	irgsp1_rep	CDS	41053709	41053802	.	+	1	Parent=Os01t0935300-02
Chr01	irgsp1_rep	CDS	41054381	41054566	.	+	0	Parent=Os01t0935300-02
Chr01	irgsp1_rep	CDS	41054676	41054723	.	+	0	Parent=Os01t0935300-02
Chr01	irgsp1_rep	CDS	41054799	41054984	.	+	0	Parent=Os01t0935300-02
Chr01	irgsp1_rep	CDS	41055071	41055157	.	+	0	Parent=Os01t0935300-02
Chr01	irgsp1_rep	CDS	41055700	41055786	.	+	0	Parent=Os01t0935300-02
Chr01	irgsp1_rep	CDS	41055872	41055958	.	+	0	Parent=Os01t0935300-02
Chr01	irgsp1_rep	three_prime_UTR	41055959	41056409	.	+	.	Parent=Os01t0935300-02
Chr01	irgsp1_rep	mRNA	41054473	41056080	.	-	.	ID=Os01t0935350-00;Name=Os01t0935350-00;Locus_id=Os01g0935350;Note=Hypothetical protein.;Transcript_evidence=BT019124 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0935350-00
Chr01	irgsp1_rep	five_prime_UTR	41055980	41056080	.	-	.	Parent=Os01t0935350-00
Chr01	irgsp1_rep	CDS	41055874	41055979	.	-	0	Parent=Os01t0935350-00
Chr01	irgsp1_rep	CDS	41055658	41055791	.	-	2	Parent=Os01t0935350-00
Chr01	irgsp1_rep	CDS	41054990	41055028	.	-	0	Parent=Os01t0935350-00
Chr01	irgsp1_rep	three_prime_UTR	41054743	41054989	.	-	.	Parent=Os01t0935350-00
Chr01	irgsp1_rep	three_prime_UTR	41054473	41054556	.	-	.	Parent=Os01t0935350-00
Chr01	irgsp1_rep	mRNA	41057220	41058809	.	-	.	ID=Os01t0935400-00;Name=Os01t0935400-00;Locus_id=Os01g0935400;Note=2OG-Fe(II) oxygenase domain containing protein.;Transcript_evidence=AK365108 (DDBJ);ORF_evidence=B6U6C1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);TENOR=Os01t0935400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	41058528	41058809	.	-	0	Parent=Os01t0935400-00
Chr01	irgsp1_rep	CDS	41058082	41058329	.	-	0	Parent=Os01t0935400-00
Chr01	irgsp1_rep	CDS	41057285	41057855	.	-	1	Parent=Os01t0935400-00
Chr01	irgsp1_rep	three_prime_UTR	41057220	41057284	.	-	.	Parent=Os01t0935400-00
Chr01	irgsp1_rep	mRNA	41057520	41058792	.	+	.	ID=Os01t0935450-00;Name=Os01t0935450-00;Locus_id=Os01g0935450;Note=Hypothetical protein.;Transcript_evidence=EU953848 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0935450-00
Chr01	irgsp1_rep	five_prime_UTR	41057520	41057792	.	+	.	Parent=Os01t0935450-00
Chr01	irgsp1_rep	CDS	41057793	41057836	.	+	0	Parent=Os01t0935450-00
Chr01	irgsp1_rep	CDS	41058068	41058365	.	+	1	Parent=Os01t0935450-00
Chr01	irgsp1_rep	three_prime_UTR	41058366	41058412	.	+	.	Parent=Os01t0935450-00
Chr01	irgsp1_rep	three_prime_UTR	41058518	41058792	.	+	.	Parent=Os01t0935450-00
Chr01	irgsp1_rep	mRNA	41061106	41067020	.	+	.	ID=Os01t0935500-01;Name=Os01t0935500-01;Locus_id=Os01g0935500;CGSNL Gene Symbol=HAK2;CGSNL Gene Name=HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 2;Oryzabase Gene Symbol Synonym(s)=OsHAK2;Oryzabase Gene Name Synonym(s)=High-affinity Potassium(K+) Transporter 2%2C Probable potassium transporter 2;Note=Similar to Potassium transporter 7 (OsHAK7).;Transcript_evidence=AK070575 (DDBJ%2C Best hit);ORF_evidence=Q06XL4 (UniProt);GO=Biological Process: potassium ion transmembrane transport (GO:0071805),Cellular Component: membrane (GO:0016020),Molecular Function: potassium ion transmembrane transporter activity (GO:0015079);InterPro=K+ potassium transporter (IPR003855);NIAS_FLcDNA=J023055A03;Oryzabase=8656;Expression=AK070575;TENOR=Os01t0935500-01;KEGG=Os01t0935500-01
Chr01	irgsp1_rep	five_prime_UTR	41061106	41061202	.	+	.	Parent=Os01t0935500-01
Chr01	irgsp1_rep	CDS	41061203	41061244	.	+	0	Parent=Os01t0935500-01
Chr01	irgsp1_rep	CDS	41062250	41062487	.	+	0	Parent=Os01t0935500-01
Chr01	irgsp1_rep	CDS	41062705	41062953	.	+	2	Parent=Os01t0935500-01
Chr01	irgsp1_rep	CDS	41063060	41063110	.	+	2	Parent=Os01t0935500-01
Chr01	irgsp1_rep	CDS	41063685	41063945	.	+	2	Parent=Os01t0935500-01
Chr01	irgsp1_rep	CDS	41064063	41064115	.	+	2	Parent=Os01t0935500-01
Chr01	irgsp1_rep	CDS	41064594	41064708	.	+	0	Parent=Os01t0935500-01
Chr01	irgsp1_rep	CDS	41064791	41065045	.	+	2	Parent=Os01t0935500-01
Chr01	irgsp1_rep	CDS	41065172	41066259	.	+	2	Parent=Os01t0935500-01
Chr01	irgsp1_rep	three_prime_UTR	41066260	41066316	.	+	.	Parent=Os01t0935500-01
Chr01	irgsp1_rep	three_prime_UTR	41066588	41067020	.	+	.	Parent=Os01t0935500-01
Chr01	irgsp1_rep	mRNA	41062580	41066993	.	+	.	ID=Os01t0935500-02;Name=Os01t0935500-02;Locus_id=Os01g0935500;CGSNL Gene Symbol=HAK2;CGSNL Gene Name=HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 2;Oryzabase Gene Symbol Synonym(s)=OsHAK2;Oryzabase Gene Name Synonym(s)=High-affinity Potassium(K+) Transporter 2%2C Probable potassium transporter 2;Note=Similar to Potassium transporter HAK4.;Transcript_evidence=AK071411 (DDBJ%2C Best hit);ORF_evidence=Q06XL4 (UniProt);GO=Biological Process: potassium ion transmembrane transport (GO:0071805),Cellular Component: membrane (GO:0016020),Molecular Function: potassium ion transmembrane transporter activity (GO:0015079);InterPro=K+ potassium transporter (IPR003855);NIAS_FLcDNA=J023091C23;Oryzabase=8656;Expression=AK071411;TENOR=Os01t0935500-02;KEGG=Os01t0935500-02
Chr01	irgsp1_rep	five_prime_UTR	41062580	41062682	.	+	.	Parent=Os01t0935500-02
Chr01	irgsp1_rep	CDS	41062683	41062953	.	+	0	Parent=Os01t0935500-02
Chr01	irgsp1_rep	CDS	41063060	41063110	.	+	2	Parent=Os01t0935500-02
Chr01	irgsp1_rep	CDS	41063685	41063945	.	+	2	Parent=Os01t0935500-02
Chr01	irgsp1_rep	CDS	41064063	41064115	.	+	2	Parent=Os01t0935500-02
Chr01	irgsp1_rep	CDS	41064594	41064708	.	+	0	Parent=Os01t0935500-02
Chr01	irgsp1_rep	CDS	41064791	41065045	.	+	2	Parent=Os01t0935500-02
Chr01	irgsp1_rep	CDS	41065172	41066259	.	+	2	Parent=Os01t0935500-02
Chr01	irgsp1_rep	three_prime_UTR	41066260	41066316	.	+	.	Parent=Os01t0935500-02
Chr01	irgsp1_rep	three_prime_UTR	41066588	41066993	.	+	.	Parent=Os01t0935500-02
Chr01	irgsp1_rep	mRNA	41066946	41070506	.	-	.	ID=Os01t0935600-01;Name=Os01t0935600-01;Locus_id=Os01g0935600;Note=Immunoglobulin/major histocompatibility complex%2C conserved site domain containing protein.;Transcript_evidence=AK106484 (DDBJ%2C Best hit);ORF_evidence=A0F0B0 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Six-hairpin glycosidase-like (IPR008928),Six-hairpin glycosidase (IPR012341);NIAS_FLcDNA=002-104-G12;Expression=AK106484;TENOR=Os01t0935600-01;KEGG=Os01t0935600-01 (EC:2.7.4.9)
Chr01	irgsp1_rep	five_prime_UTR	41070391	41070506	.	-	.	Parent=Os01t0935600-01
Chr01	irgsp1_rep	five_prime_UTR	41068752	41069126	.	-	.	Parent=Os01t0935600-01
Chr01	irgsp1_rep	CDS	41068505	41068751	.	-	0	Parent=Os01t0935600-01
Chr01	irgsp1_rep	CDS	41068216	41068418	.	-	2	Parent=Os01t0935600-01
Chr01	irgsp1_rep	CDS	41067619	41067795	.	-	0	Parent=Os01t0935600-01
Chr01	irgsp1_rep	CDS	41067309	41067527	.	-	0	Parent=Os01t0935600-01
Chr01	irgsp1_rep	three_prime_UTR	41066946	41067308	.	-	.	Parent=Os01t0935600-01
Chr01	irgsp1_rep	mRNA	41067062	41069369	.	-	.	ID=Os01t0935600-02;Name=Os01t0935600-02;Locus_id=Os01g0935600;Note=Similar to Cold-induced thioredoxin domain-containing protein.;Transcript_evidence=AK061490 (DDBJ%2C Best hit);ORF_evidence=A0F0B0 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Six-hairpin glycosidase-like (IPR008928);NIAS_FLcDNA=006-309-B04;TENOR=Os01t0935600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	41069369	41069369	.	-	.	Parent=Os01t0935600-02
Chr01	irgsp1_rep	CDS	41069339	41069368	.	-	0	Parent=Os01t0935600-02
Chr01	irgsp1_rep	CDS	41069157	41069267	.	-	0	Parent=Os01t0935600-02
Chr01	irgsp1_rep	CDS	41068505	41068730	.	-	0	Parent=Os01t0935600-02
Chr01	irgsp1_rep	CDS	41068216	41068418	.	-	2	Parent=Os01t0935600-02
Chr01	irgsp1_rep	CDS	41067619	41067795	.	-	0	Parent=Os01t0935600-02
Chr01	irgsp1_rep	CDS	41067309	41067527	.	-	0	Parent=Os01t0935600-02
Chr01	irgsp1_rep	three_prime_UTR	41067062	41067308	.	-	.	Parent=Os01t0935600-02
Chr01	irgsp1_rep	mRNA	41067142	41067678	.	-	.	ID=Os01t0935600-03;Name=Os01t0935600-03;Locus_id=Os01g0935600;Note=Similar to predicted protein.;Transcript_evidence=AK105604 (DDBJ%2C Best hit);ORF_evidence=A0F0B0 (UniProt);NIAS_FLcDNA=001-200-A10;Expression=AK105604;TENOR=Os01t0935600-03;KEGG=Os01t0935600-03 (EC:2.7.4.9)
Chr01	irgsp1_rep	CDS	41067619	41067678	.	-	0	Parent=Os01t0935600-03
Chr01	irgsp1_rep	CDS	41067309	41067527	.	-	0	Parent=Os01t0935600-03
Chr01	irgsp1_rep	three_prime_UTR	41067142	41067308	.	-	.	Parent=Os01t0935600-03
Chr01	irgsp1_rep	mRNA	41074431	41078548	.	+	.	ID=Os01t0935700-01;Name=Os01t0935700-01;Locus_id=Os01g0935700;Note=Similar to CytoChrome c1%2C heme protein.;Transcript_evidence=AK073125 (DDBJ%2C Best hit);ORF_evidence=B6SWR9 (UniProt);GO=Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome c1 (IPR002326),CytoChrome c domain (IPR009056);NIAS_FLcDNA=J033010L17;Expression=AK073125;TENOR=Os01t0935700-01;KEGG=Os01t0935700-01 (EC:1.10.2.2)
Chr01	irgsp1_rep	five_prime_UTR	41074431	41074643	.	+	.	Parent=Os01t0935700-01
Chr01	irgsp1_rep	five_prime_UTR	41075092	41075099	.	+	.	Parent=Os01t0935700-01
Chr01	irgsp1_rep	CDS	41075100	41075153	.	+	0	Parent=Os01t0935700-01
Chr01	irgsp1_rep	CDS	41076310	41076518	.	+	0	Parent=Os01t0935700-01
Chr01	irgsp1_rep	CDS	41076838	41077117	.	+	1	Parent=Os01t0935700-01
Chr01	irgsp1_rep	CDS	41077207	41077347	.	+	0	Parent=Os01t0935700-01
Chr01	irgsp1_rep	three_prime_UTR	41077348	41078548	.	+	.	Parent=Os01t0935700-01
Chr01	irgsp1_rep	mRNA	41074505	41079262	.	+	.	ID=Os01t0935700-02;Name=Os01t0935700-02;Locus_id=Os01g0935700;Note=Similar to CytoChrome c1 (Fragment).;Transcript_evidence=AK069403 (DDBJ%2C Best hit);ORF_evidence=B6SWR9 (UniProt);GO=Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome c1 (IPR002326),CytoChrome c domain (IPR009056),CytoChrome c1%2C transmembrane anchor%2C C-terminal (IPR021157);NIAS_FLcDNA=J023013M20;Expression=AK069403;TENOR=Os01t0935700-02;KEGG=Os01t0935700-02 (EC:1.10.2.2)
Chr01	irgsp1_rep	five_prime_UTR	41074505	41074643	.	+	.	Parent=Os01t0935700-02
Chr01	irgsp1_rep	five_prime_UTR	41075092	41075099	.	+	.	Parent=Os01t0935700-02
Chr01	irgsp1_rep	CDS	41075100	41075153	.	+	0	Parent=Os01t0935700-02
Chr01	irgsp1_rep	CDS	41076310	41076518	.	+	0	Parent=Os01t0935700-02
Chr01	irgsp1_rep	CDS	41076838	41077117	.	+	1	Parent=Os01t0935700-02
Chr01	irgsp1_rep	CDS	41077207	41077278	.	+	0	Parent=Os01t0935700-02
Chr01	irgsp1_rep	CDS	41078467	41078583	.	+	0	Parent=Os01t0935700-02
Chr01	irgsp1_rep	CDS	41078680	41078745	.	+	0	Parent=Os01t0935700-02
Chr01	irgsp1_rep	CDS	41078830	41078946	.	+	0	Parent=Os01t0935700-02
Chr01	irgsp1_rep	three_prime_UTR	41078947	41079262	.	+	.	Parent=Os01t0935700-02
Chr01	irgsp1_rep	mRNA	41079487	41080890	.	-	.	ID=Os01t0935800-01;Name=Os01t0935800-01;Locus_id=Os01g0935800;CGSNL Gene Symbol=RLCK54;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 54;Oryzabase Gene Symbol Synonym(s)=OsRLCK54;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 54;Note=Similar to BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1.;Transcript_evidence=AK111919 (DDBJ%2C Best hit);ORF_evidence=B6T6U0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-010-D03;Oryzabase=18771;TENOR=Os01t0935800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	41080890	41080890	.	-	.	Parent=Os01t0935800-01
Chr01	irgsp1_rep	CDS	41080781	41080889	.	-	0	Parent=Os01t0935800-01
Chr01	irgsp1_rep	CDS	41080616	41080690	.	-	2	Parent=Os01t0935800-01
Chr01	irgsp1_rep	CDS	41080335	41080527	.	-	2	Parent=Os01t0935800-01
Chr01	irgsp1_rep	CDS	41080028	41080160	.	-	1	Parent=Os01t0935800-01
Chr01	irgsp1_rep	CDS	41079638	41079889	.	-	0	Parent=Os01t0935800-01
Chr01	irgsp1_rep	three_prime_UTR	41079487	41079637	.	-	.	Parent=Os01t0935800-01
Chr01	irgsp1_rep	mRNA	41085902	41088168	.	-	.	ID=Os01t0935900-01;Name=Os01t0935900-01;Locus_id=Os01g0935900;CGSNL Gene Symbol=SDH4;CGSNL Gene Name=SUCCINATE DEHYDROGENASE SUBUNIT 4;Oryzabase Gene Name Synonym(s)=SUCCINATE:UBIQUINONE OXIDOREDUCTASE;Note=Similar to Succinate dehydrogenase subunit 4.;Transcript_evidence=AK069146 (DDBJ%2C Best hit);ORF_evidence=Q946Y2 (UniProt);NIAS_FLcDNA=J023007E08;Oryzabase=8750;Expression=AK069146;TENOR=Os01t0935900-01;KEGG=Os01t0935900-01
Chr01	irgsp1_rep	five_prime_UTR	41088107	41088168	.	-	.	Parent=Os01t0935900-01
Chr01	irgsp1_rep	CDS	41087909	41088106	.	-	0	Parent=Os01t0935900-01
Chr01	irgsp1_rep	CDS	41086740	41086835	.	-	0	Parent=Os01t0935900-01
Chr01	irgsp1_rep	CDS	41086244	41086585	.	-	0	Parent=Os01t0935900-01
Chr01	irgsp1_rep	three_prime_UTR	41085902	41086243	.	-	.	Parent=Os01t0935900-01
Chr01	irgsp1_rep	mRNA	41086031	41086376	.	-	.	ID=Os01t0935900-02;Name=Os01t0935900-02;Locus_id=Os01g0935900;CGSNL Gene Symbol=SDH4;CGSNL Gene Name=SUCCINATE DEHYDROGENASE SUBUNIT 4;Oryzabase Gene Name Synonym(s)=SUCCINATE:UBIQUINONE OXIDOREDUCTASE;Note=Similar to Succinate dehydrogenase subunit 4.;Transcript_evidence=AK058930 (DDBJ%2C Best hit);ORF_evidence=Q946Y2 (UniProt);NIAS_FLcDNA=001-009-D01;Oryzabase=8750;Expression=AK058930;TENOR=Os01t0935900-02;KEGG=Os01t0935900-02
Chr01	irgsp1_rep	five_prime_UTR	41086376	41086376	.	-	.	Parent=Os01t0935900-02
Chr01	irgsp1_rep	CDS	41086244	41086375	.	-	0	Parent=Os01t0935900-02
Chr01	irgsp1_rep	three_prime_UTR	41086031	41086243	.	-	.	Parent=Os01t0935900-02
Chr01	irgsp1_rep	mRNA	41087786	41090680	.	+	.	ID=Os01t0936000-00;Name=Os01t0936000-00;Locus_id=Os01g0936000;CGSNL Gene Symbol=GRX7;CGSNL Gene Name=GLUTAREDOXIN 7;Oryzabase Gene Symbol Synonym(s)=OsGRX7;Oryzabase Gene Name Synonym(s)=glutaredoxin 7;Note=Putative glutaredoxin-C2.;Transcript_evidence=EU973478 (DDBJ);ORF_evidence=Q2QP86 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin (IPR002109),Glutaredoxin-like%2C plant II (IPR011905),Thioredoxin-like fold (IPR012336);Oryzabase=13568;TENOR=Os01t0936000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	41087786	41088046	.	+	.	Parent=Os01t0936000-00
Chr01	irgsp1_rep	five_prime_UTR	41090296	41090302	.	+	.	Parent=Os01t0936000-00
Chr01	irgsp1_rep	CDS	41090303	41090680	.	+	0	Parent=Os01t0936000-00
Chr01	irgsp1_rep	mRNA	41095911	41100367	.	+	.	ID=Os01t0936100-01;Name=Os01t0936100-01;Locus_id=Os01g0936100;CGSNL Gene Symbol=RLCK55;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 55;Oryzabase Gene Symbol Synonym(s)=OsRLCK55;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 55;Note=Similar to Protein kinase.;Transcript_evidence=AK101371 (DDBJ%2C Best hit);ORF_evidence=NP_197362.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033035N01;Oryzabase=12339;Expression=AK101371;TENOR=Os01t0936100-01;KEGG=Os01t0936100-01
Chr01	irgsp1_rep	five_prime_UTR	41095911	41096241	.	+	.	Parent=Os01t0936100-01
Chr01	irgsp1_rep	CDS	41096242	41096362	.	+	0	Parent=Os01t0936100-01
Chr01	irgsp1_rep	CDS	41097368	41097564	.	+	2	Parent=Os01t0936100-01
Chr01	irgsp1_rep	CDS	41097718	41097907	.	+	0	Parent=Os01t0936100-01
Chr01	irgsp1_rep	CDS	41098110	41098501	.	+	2	Parent=Os01t0936100-01
Chr01	irgsp1_rep	CDS	41099031	41099606	.	+	0	Parent=Os01t0936100-01
Chr01	irgsp1_rep	three_prime_UTR	41099607	41100367	.	+	.	Parent=Os01t0936100-01
Chr01	irgsp1_rep	mRNA	41099037	41100292	.	+	.	ID=Os01t0936100-02;Name=Os01t0936100-02;Locus_id=Os01g0936100;CGSNL Gene Symbol=RLCK55;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 55;Oryzabase Gene Symbol Synonym(s)=OsRLCK55;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 55;Note=Similar to protein kinase family protein.;Transcript_evidence=AK060413 (DDBJ%2C Best hit);ORF_evidence=NP_197362.1 (RefSeq);NIAS_FLcDNA=001-010-E05;Oryzabase=12339;Expression=AK060413;TENOR=Os01t0936100-02;KEGG=Os01t0936100-02
Chr01	irgsp1_rep	CDS	41099037	41099606	.	+	0	Parent=Os01t0936100-02
Chr01	irgsp1_rep	three_prime_UTR	41099607	41100292	.	+	.	Parent=Os01t0936100-02
Chr01	irgsp1_rep	mRNA	41100496	41105054	.	-	.	ID=Os01t0936200-01;Name=Os01t0936200-01;Locus_id=Os01g0936200;Oryzabase Gene Name Synonym(s)=Lipase class 3 family protein;Note=Lipase%2C class 3 family protein.;Transcript_evidence=AK101890 (DDBJ%2C Best hit);ORF_evidence=Q8L5T0 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921);NIAS_FLcDNA=J033070N06;Oryzabase=22038;Expression=AK101890;TENOR=Os01t0936200-01;KEGG=Os01t0936200-01
Chr01	irgsp1_rep	five_prime_UTR	41104783	41105054	.	-	.	Parent=Os01t0936200-01
Chr01	irgsp1_rep	five_prime_UTR	41104708	41104710	.	-	.	Parent=Os01t0936200-01
Chr01	irgsp1_rep	CDS	41104641	41104707	.	-	0	Parent=Os01t0936200-01
Chr01	irgsp1_rep	CDS	41103845	41103927	.	-	2	Parent=Os01t0936200-01
Chr01	irgsp1_rep	CDS	41103653	41103718	.	-	0	Parent=Os01t0936200-01
Chr01	irgsp1_rep	CDS	41103488	41103535	.	-	0	Parent=Os01t0936200-01
Chr01	irgsp1_rep	CDS	41103332	41103399	.	-	0	Parent=Os01t0936200-01
Chr01	irgsp1_rep	CDS	41103053	41103125	.	-	1	Parent=Os01t0936200-01
Chr01	irgsp1_rep	CDS	41102796	41102975	.	-	0	Parent=Os01t0936200-01
Chr01	irgsp1_rep	three_prime_UTR	41101371	41102795	.	-	.	Parent=Os01t0936200-01
Chr01	irgsp1_rep	three_prime_UTR	41101026	41101114	.	-	.	Parent=Os01t0936200-01
Chr01	irgsp1_rep	three_prime_UTR	41100496	41100872	.	-	.	Parent=Os01t0936200-01
Chr01	irgsp1_rep	mRNA	41110258	41110976	.	-	.	ID=Os01t0936600-01;Name=Os01t0936600-01;Locus_id=Os01g0936600;Note=Hypothetical protein.;Transcript_evidence=AK071831 (DDBJ%2C Best hit),AK119705 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023119K19,002-157-E04;TENOR=Os01t0936600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	41110975	41110976	.	-	.	Parent=Os01t0936600-01
Chr01	irgsp1_rep	CDS	41110741	41110974	.	-	0	Parent=Os01t0936600-01
Chr01	irgsp1_rep	three_prime_UTR	41110258	41110740	.	-	.	Parent=Os01t0936600-01
Chr01	irgsp1_rep	mRNA	41112089	41114858	.	-	.	ID=Os01t0936700-01;Name=Os01t0936700-01;Locus_id=Os01g0936700;Oryzabase Gene Symbol Synonym(s)=OsSTA43;Note=Conserved hypothetical protein.;Transcript_evidence=AK107072 (DDBJ%2C Best hit);ORF_evidence=B9EW32 (UniProt);NIAS_FLcDNA=002-121-E12;Oryzabase=19349;Expression=AK107072;TENOR=Os01t0936700-01;KEGG=Os01t0936700-01
Chr01	irgsp1_rep	five_prime_UTR	41114792	41114858	.	-	.	Parent=Os01t0936700-01
Chr01	irgsp1_rep	CDS	41113459	41114791	.	-	0	Parent=Os01t0936700-01
Chr01	irgsp1_rep	CDS	41112296	41112492	.	-	2	Parent=Os01t0936700-01
Chr01	irgsp1_rep	three_prime_UTR	41112089	41112295	.	-	.	Parent=Os01t0936700-01
Chr01	irgsp1_rep	mRNA	41114189	41114856	.	-	.	ID=Os01t0936700-02;Name=Os01t0936700-02;Locus_id=Os01g0936700;Oryzabase Gene Symbol Synonym(s)=OsSTA43;Note=Hypothetical gene.;Transcript_evidence=AK111027 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=002-174-H05;Oryzabase=19349;Expression=AK111027;TENOR=Os01t0936700-02;KEGG=Os01t0936700-02
Chr01	irgsp1_rep	five_prime_UTR	41114855	41114856	.	-	.	Parent=Os01t0936700-02
Chr01	irgsp1_rep	CDS	41114189	41114854	.	-	0	Parent=Os01t0936700-02
Chr01	irgsp1_rep	mRNA	41117216	41122215	.	-	.	ID=Os01t0936800-01;Name=Os01t0936800-01;Locus_id=Os01g0936800;Note=PapD-like domain containing protein.;Transcript_evidence=AK103322 (DDBJ%2C Best hit);ORF_evidence=B6TRX1 (UniProt);GO=Molecular Function: structural molecule activity (GO:0005198);InterPro=Major sperm protein (IPR000535),PapD-like (IPR008962);NIAS_FLcDNA=J033125J06;Expression=AK103322;TENOR=Os01t0936800-01;KEGG=Os01t0936800-01
Chr01	irgsp1_rep	five_prime_UTR	41122005	41122215	.	-	.	Parent=Os01t0936800-01
Chr01	irgsp1_rep	CDS	41121956	41122004	.	-	0	Parent=Os01t0936800-01
Chr01	irgsp1_rep	CDS	41120672	41120742	.	-	2	Parent=Os01t0936800-01
Chr01	irgsp1_rep	CDS	41120055	41120136	.	-	0	Parent=Os01t0936800-01
Chr01	irgsp1_rep	CDS	41119332	41119447	.	-	2	Parent=Os01t0936800-01
Chr01	irgsp1_rep	CDS	41118675	41119247	.	-	0	Parent=Os01t0936800-01
Chr01	irgsp1_rep	CDS	41118068	41118130	.	-	0	Parent=Os01t0936800-01
Chr01	irgsp1_rep	CDS	41117846	41117923	.	-	0	Parent=Os01t0936800-01
Chr01	irgsp1_rep	CDS	41117645	41117755	.	-	0	Parent=Os01t0936800-01
Chr01	irgsp1_rep	three_prime_UTR	41117216	41117644	.	-	.	Parent=Os01t0936800-01
Chr01	irgsp1_rep	mRNA	41117263	41119190	.	-	.	ID=Os01t0936800-02;Name=Os01t0936800-02;Locus_id=Os01g0936800;Note=Similar to VAP27-2.;Transcript_evidence=AK059500 (DDBJ%2C Best hit);ORF_evidence=B6TRX1 (UniProt);NIAS_FLcDNA=001-029-A02;Expression=AK059500;TENOR=Os01t0936800-02;KEGG=Os01t0936800-02
Chr01	irgsp1_rep	CDS	41118675	41119190	.	-	0	Parent=Os01t0936800-02
Chr01	irgsp1_rep	CDS	41118068	41118130	.	-	0	Parent=Os01t0936800-02
Chr01	irgsp1_rep	CDS	41117846	41117923	.	-	0	Parent=Os01t0936800-02
Chr01	irgsp1_rep	CDS	41117645	41117755	.	-	0	Parent=Os01t0936800-02
Chr01	irgsp1_rep	three_prime_UTR	41117263	41117644	.	-	.	Parent=Os01t0936800-02
Chr01	irgsp1_rep	mRNA	41117827	41118161	.	+	.	ID=Os01t0936850-00;Name=Os01t0936850-00;Locus_id=Os01g0936850;Note=Non-protein coding transcript.;Transcript_evidence=EU947368 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0936850-00
Chr01	irgsp1_rep	exon	41117827	41118161	.	+	.	Parent=Os01t0936850-00
Chr01	irgsp1_rep	mRNA	41126538	41127824	.	-	.	ID=Os01t0936900-00;Name=Os01t0936900-00;Locus_id=Os01g0936900;Note=Peptidase A1 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5JMK2 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);TENOR=Os01t0936900-00;KEGG=Os01t0936900-00
Chr01	irgsp1_rep	CDS	41126538	41127824	.	-	0	Parent=Os01t0936900-00
Chr01	irgsp1_rep	mRNA	41126549	41127715	.	+	.	ID=Os01t0936950-00;Name=Os01t0936950-00;Locus_id=Os01g0936950;Note=Hypothetical protein.;Transcript_evidence=BT009260 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0936950-00
Chr01	irgsp1_rep	five_prime_UTR	41126549	41127129	.	+	.	Parent=Os01t0936950-00
Chr01	irgsp1_rep	CDS	41127130	41127468	.	+	0	Parent=Os01t0936950-00
Chr01	irgsp1_rep	three_prime_UTR	41127469	41127715	.	+	.	Parent=Os01t0936950-00
Chr01	irgsp1_rep	mRNA	41133500	41134904	.	-	.	ID=Os01t0937000-01;Name=Os01t0937000-01;Locus_id=Os01g0937000;Note=Peptidase aspartic%2C catalytic domain containing protein.;Transcript_evidence=AK108620 (DDBJ%2C Best hit);ORF_evidence=B6UHL4 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=002-147-C07;Expression=AK108620;TENOR=Os01t0937000-01;KEGG=Os01t0937000-01
Chr01	irgsp1_rep	five_prime_UTR	41134903	41134904	.	-	.	Parent=Os01t0937000-01
Chr01	irgsp1_rep	CDS	41133715	41134902	.	-	0	Parent=Os01t0937000-01
Chr01	irgsp1_rep	three_prime_UTR	41133500	41133714	.	-	.	Parent=Os01t0937000-01
Chr01	irgsp1_rep	mRNA	41133779	41134930	.	+	.	ID=Os01t0937012-00;Name=Os01t0937012-00;Locus_id=Os01g0937012;Note=Hypothetical protein.;Transcript_evidence=BT009260 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0937012-00
Chr01	irgsp1_rep	five_prime_UTR	41133779	41133780	.	+	.	Parent=Os01t0937012-00
Chr01	irgsp1_rep	CDS	41133781	41134191	.	+	0	Parent=Os01t0937012-00
Chr01	irgsp1_rep	three_prime_UTR	41134192	41134930	.	+	.	Parent=Os01t0937012-00
Chr01	irgsp1_rep	mRNA	41139354	41140530	.	+	.	ID=Os01t0937025-00;Name=Os01t0937025-00;Locus_id=Os01g0937025;Note=Hypothetical gene.;Transcript_evidence=BT009260 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0937025-00;KEGG=Os01t0937025-00
Chr01	irgsp1_rep	five_prime_UTR	41139354	41139354	.	+	.	Parent=Os01t0937025-00
Chr01	irgsp1_rep	CDS	41139355	41140530	.	+	0	Parent=Os01t0937025-00
Chr01	irgsp1_rep	mRNA	41139355	41140629	.	-	.	ID=Os01t0937050-01;Name=Os01t0937050-01;Locus_id=Os01g0937050;RAP-DB Gene Symbol Synonym(s)=OsCLP;RAP-DB Gene Name Synonym(s)=chitinase-like protein;Oryzabase Gene Symbol Synonym(s)=OsCLP%2C CLP;Oryzabase Gene Name Synonym(s)=chitinase-like protein;Note=Homolog of xylanase inhibitor%2C Chitinase-like protein%2C Defense response against pathogens%2C Growth regulation through calcium signaling;Transcript_evidence=Inferred from literature;ORF_evidence=Q8S1V1;GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Aspartic peptidase A1 family (IPR001461),Aspartic peptidase domain (IPR021109),Peptidase family A1 domain (IPR033121),Xylanase inhibitor%2C N-terminal (IPR032861),Xylanase inhibitor I-like (IPR033868),Xylanase inhibitor%2C C-terminal (IPR032799);Manual Curation=June 1%2C 2017;Literature_PMID=28401568,23331415;Oryzabase=11727;TENOR=Os01t0937050-00;Subcellular location=apoplast (GO:0048046)
Chr01	irgsp1_rep	CDS	41139355	41140629	.	-	0	Parent=Os01t0937050-01
Chr01	irgsp1_rep	mRNA	41142013	41143416	.	-	.	ID=Os01t0937100-01;Name=Os01t0937100-01;Locus_id=Os01g0937100;Note=Similar to Xylanase inhibitor precursor (Xylanase inhibitor TAXI-I).;Transcript_evidence=AK105806 (DDBJ%2C Best hit);ORF_evidence=Q53IQ3 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=001-203-B07;Expression=AK105806;TENOR=Os01t0937100-01;KEGG=Os01t0937100-01
Chr01	irgsp1_rep	five_prime_UTR	41143405	41143416	.	-	.	Parent=Os01t0937100-01
Chr01	irgsp1_rep	CDS	41142145	41143404	.	-	0	Parent=Os01t0937100-01
Chr01	irgsp1_rep	three_prime_UTR	41142013	41142144	.	-	.	Parent=Os01t0937100-01
Chr01	irgsp1_rep	mRNA	41145301	41146727	.	-	.	ID=Os01t0937200-01;Name=Os01t0937200-01;Locus_id=Os01g0937200;Note=Peptidase aspartic%2C catalytic domain containing protein.;Transcript_evidence=AK121597 (DDBJ%2C Best hit);ORF_evidence=B8A8V3 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J033039J24;Expression=AK121597;TENOR=Os01t0937200-01;KEGG=Os01t0937200-01
Chr01	irgsp1_rep	five_prime_UTR	41146672	41146727	.	-	.	Parent=Os01t0937200-01
Chr01	irgsp1_rep	CDS	41145463	41146671	.	-	0	Parent=Os01t0937200-01
Chr01	irgsp1_rep	three_prime_UTR	41145301	41145462	.	-	.	Parent=Os01t0937200-01
Chr01	irgsp1_rep	mRNA	41149956	41154666	.	-	.	ID=Os01t0937300-01;Name=Os01t0937300-01;Locus_id=Os01g0937300;Note=NB-ARC domain containing protein.;Transcript_evidence=AK122144 (DDBJ%2C Best hit);ORF_evidence=Q5JMJ4 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: protein binding (GO:0005515),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),Leucine-rich repeat (IPR001611),NB-ARC (IPR002182);NIAS_FLcDNA=J033136K12;TENOR=Os01t0937300-01
Chr01	irgsp1_rep	five_prime_UTR	41154452	41154666	.	-	.	Parent=Os01t0937300-01
Chr01	irgsp1_rep	five_prime_UTR	41153521	41154304	.	-	.	Parent=Os01t0937300-01
Chr01	irgsp1_rep	CDS	41153215	41153520	.	-	0	Parent=Os01t0937300-01
Chr01	irgsp1_rep	CDS	41151781	41152944	.	-	0	Parent=Os01t0937300-01
Chr01	irgsp1_rep	CDS	41149956	41151048	.	-	0	Parent=Os01t0937300-01
Chr01	irgsp1_rep	mRNA	41154065	41154660	.	-	.	ID=Os01t0937300-02;Name=Os01t0937300-02;Locus_id=Os01g0937300;Note=Hypothetical conserved gene.;Transcript_evidence=AK062872 (DDBJ%2C Best hit);ORF_evidence=Q5JMK1 (UniProt);NIAS_FLcDNA=001-108-C08;Expression=AK062872;TENOR=Os01t0937300-02;KEGG=Os01t0937300-02
Chr01	irgsp1_rep	five_prime_UTR	41154540	41154660	.	-	.	Parent=Os01t0937300-02
Chr01	irgsp1_rep	CDS	41154452	41154539	.	-	0	Parent=Os01t0937300-02
Chr01	irgsp1_rep	CDS	41154207	41154304	.	-	2	Parent=Os01t0937300-02
Chr01	irgsp1_rep	three_prime_UTR	41154065	41154206	.	-	.	Parent=Os01t0937300-02
Chr01	irgsp1_rep	mRNA	41150479	41153352	.	-	.	ID=Os01t0937300-03;Name=Os01t0937300-03;Locus_id=Os01g0937300;Note=Hypothetical conserved gene.;Transcript_evidence=AK106251 (DDBJ%2C Best hit);ORF_evidence=Q5JMJ4 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=002-100-E03;Expression=AK106251;TENOR=Os01t0937300-03;KEGG=Os01t0937300-03
Chr01	irgsp1_rep	CDS	41153215	41153352	.	-	0	Parent=Os01t0937300-03
Chr01	irgsp1_rep	CDS	41151781	41152944	.	-	0	Parent=Os01t0937300-03
Chr01	irgsp1_rep	CDS	41150479	41151048	.	-	0	Parent=Os01t0937300-03
Chr01	irgsp1_rep	mRNA	41156058	41156498	.	+	.	ID=Os01t0937366-00;Name=Os01t0937366-00;Locus_id=Os01g0937366;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001172733.1 (RefSeq);TENOR=Os01t0937366-00;KEGG=Os01t0937366-00
Chr01	irgsp1_rep	CDS	41156058	41156252	.	+	0	Parent=Os01t0937366-00
Chr01	irgsp1_rep	CDS	41156304	41156498	.	+	0	Parent=Os01t0937366-00
Chr01	irgsp1_rep	mRNA	41159307	41163821	.	-	.	ID=Os01t0937400-01;Name=Os01t0937400-01;Locus_id=Os01g0937400;Note=NB-ARC domain containing protein.;Transcript_evidence=AK069827 (DDBJ%2C Best hit);ORF_evidence=NP_001045335.1 (RefSeq);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J023030I06;TENOR=Os01t0937400-01;KEGG=Os01t0937400-01
Chr01	irgsp1_rep	five_prime_UTR	41163754	41163821	.	-	.	Parent=Os01t0937400-01
Chr01	irgsp1_rep	CDS	41163448	41163753	.	-	0	Parent=Os01t0937400-01
Chr01	irgsp1_rep	CDS	41161985	41163148	.	-	0	Parent=Os01t0937400-01
Chr01	irgsp1_rep	CDS	41160694	41160906	.	-	0	Parent=Os01t0937400-01
Chr01	irgsp1_rep	CDS	41159604	41159651	.	-	0	Parent=Os01t0937400-01
Chr01	irgsp1_rep	three_prime_UTR	41159307	41159603	.	-	.	Parent=Os01t0937400-01
Chr01	irgsp1_rep	mRNA	41155827	41160726	.	-	.	ID=Os01t0937400-02;Name=Os01t0937400-02;Locus_id=Os01g0937400;Note=Hypothetical conserved gene.;Transcript_evidence=AK120699 (DDBJ%2C Best hit);ORF_evidence=B9EW37 (UniProt);NIAS_FLcDNA=J013170L21;TENOR=Os01t0937400-02;KEGG=Os01t0937400-02
Chr01	irgsp1_rep	five_prime_UTR	41159394	41160726	.	-	.	Parent=Os01t0937400-02
Chr01	irgsp1_rep	CDS	41157102	41159393	.	-	0	Parent=Os01t0937400-02
Chr01	irgsp1_rep	three_prime_UTR	41157099	41157101	.	-	.	Parent=Os01t0937400-02
Chr01	irgsp1_rep	three_prime_UTR	41155827	41156737	.	-	.	Parent=Os01t0937400-02
Chr01	irgsp1_rep	mRNA	41166235	41167902	.	+	.	ID=Os01t0937500-01;Name=Os01t0937500-01;Locus_id=Os01g0937500;Note=Peptidase aspartic%2C catalytic domain containing protein.;Transcript_evidence=AK108977 (DDBJ%2C Best hit);ORF_evidence=B8A8V7 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=002-153-E08;Expression=AK108977;TENOR=Os01t0937500-01;KEGG=Os01t0937500-01
Chr01	irgsp1_rep	five_prime_UTR	41166235	41166306	.	+	.	Parent=Os01t0937500-01
Chr01	irgsp1_rep	CDS	41166307	41167256	.	+	0	Parent=Os01t0937500-01
Chr01	irgsp1_rep	CDS	41167336	41167717	.	+	1	Parent=Os01t0937500-01
Chr01	irgsp1_rep	three_prime_UTR	41167718	41167902	.	+	.	Parent=Os01t0937500-01
Chr01	irgsp1_rep	mRNA	41169527	41171002	.	+	.	ID=Os01t0937600-01;Name=Os01t0937600-01;Locus_id=Os01g0937600;Note=Peptidase aspartic%2C catalytic domain containing protein.;Transcript_evidence=AK064091 (DDBJ%2C Best hit);ORF_evidence=A2WYV5 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=002-100-D09;Expression=AK064091;TENOR=Os01t0937600-01;KEGG=Os01t0937600-01
Chr01	irgsp1_rep	five_prime_UTR	41169527	41169563	.	+	.	Parent=Os01t0937600-01
Chr01	irgsp1_rep	CDS	41169564	41170892	.	+	0	Parent=Os01t0937600-01
Chr01	irgsp1_rep	three_prime_UTR	41170893	41171002	.	+	.	Parent=Os01t0937600-01
Chr01	irgsp1_rep	mRNA	41176391	41177695	.	+	.	ID=Os01t0937800-00;Name=Os01t0937800-00;Locus_id=Os01g0937800;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8S1U4 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);TENOR=Os01t0937800-00;KEGG=Os01t0937800-00
Chr01	irgsp1_rep	CDS	41176391	41177695	.	+	0	Parent=Os01t0937800-00
Chr01	irgsp1_rep	mRNA	41176494	41177665	.	-	.	ID=Os01t0937850-00;Name=Os01t0937850-00;Locus_id=Os01g0937850;Note=Hypothetical protein.;Transcript_evidence=BT009260 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0937850-00
Chr01	irgsp1_rep	CDS	41177060	41177665	.	-	0	Parent=Os01t0937850-00
Chr01	irgsp1_rep	three_prime_UTR	41176494	41177059	.	-	.	Parent=Os01t0937850-00
Chr01	irgsp1_rep	mRNA	41179510	41180259	.	+	.	ID=Os01t0937900-00;Name=Os01t0937900-00;Locus_id=Os01g0937900;CGSNL Gene Symbol=AGP2;CGSNL Gene Name=ARABINOGALACTAN PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsAGP2;Oryzabase Gene Name Synonym(s)=Arabinogalactan protein 2;Note=Conserved hypothetical protein.;Transcript_evidence=CT834949 (DDBJ%2C Best hit);ORF_evidence=NP_001045338.1 (RefSeq);Oryzabase=11295;TENOR=Os01t0937900-00;KEGG=Os01t0937900-00
Chr01	irgsp1_rep	five_prime_UTR	41179510	41179559	.	+	.	Parent=Os01t0937900-00
Chr01	irgsp1_rep	CDS	41179560	41180036	.	+	0	Parent=Os01t0937900-00
Chr01	irgsp1_rep	three_prime_UTR	41180037	41180259	.	+	.	Parent=Os01t0937900-00
Chr01	irgsp1_rep	mRNA	41187052	41188691	.	+	.	ID=Os01t0938100-01;Name=Os01t0938100-01;Locus_id=Os01g0938100;CGSNL Gene Symbol=PSB28;CGSNL Gene Name=PHOTOSYSTEM II SUBUNIT;Oryzabase Gene Symbol Synonym(s)=Psb28%2C OsPSB28;Oryzabase Gene Name Synonym(s)=PSII subunit Psb28%2C photosystem II subunit Psb28;Note=Photosystem II protein Psb28%2C class 1 domain containing protein.;Transcript_evidence=AK242889 (DDBJ%2C Best hit);ORF_evidence=Q0JG75 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: oxygen evolving complex (GO:0009654),Cellular Component: membrane (GO:0016020);InterPro=Photosystem II Psb28%2C class 1 (IPR005610);NIAS_FLcDNA=J090079L12;Oryzabase=9601;TENOR=Os01t0938100-01;KEGG=Os01t0938100-01
Chr01	irgsp1_rep	five_prime_UTR	41187052	41187098	.	+	.	Parent=Os01t0938100-01
Chr01	irgsp1_rep	CDS	41187099	41187174	.	+	0	Parent=Os01t0938100-01
Chr01	irgsp1_rep	CDS	41188096	41188562	.	+	2	Parent=Os01t0938100-01
Chr01	irgsp1_rep	three_prime_UTR	41188563	41188691	.	+	.	Parent=Os01t0938100-01
Chr01	irgsp1_rep	mRNA	41193350	41198903	.	+	.	ID=Os01t0938200-01;Name=Os01t0938200-01;Locus_id=Os01g0938200;Note=Similar to RNA-binding protein BRUNOL5 (Fragment).;Transcript_evidence=AK099501 (DDBJ%2C Best hit);ORF_evidence=B8A972 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723);InterPro=RNA recognition motif domain (IPR000504),Paraneoplastic encephalomyelitis antigen (IPR002343),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013028I07;Expression=AK099501;TENOR=Os01t0938200-01;KEGG=Os01t0938200-01
Chr01	irgsp1_rep	five_prime_UTR	41193350	41193524	.	+	.	Parent=Os01t0938200-01
Chr01	irgsp1_rep	CDS	41193525	41193768	.	+	0	Parent=Os01t0938200-01
Chr01	irgsp1_rep	CDS	41194869	41194951	.	+	2	Parent=Os01t0938200-01
Chr01	irgsp1_rep	CDS	41196237	41196288	.	+	0	Parent=Os01t0938200-01
Chr01	irgsp1_rep	CDS	41196370	41196495	.	+	2	Parent=Os01t0938200-01
Chr01	irgsp1_rep	CDS	41196608	41196690	.	+	2	Parent=Os01t0938200-01
Chr01	irgsp1_rep	CDS	41196949	41197131	.	+	0	Parent=Os01t0938200-01
Chr01	irgsp1_rep	CDS	41197542	41197878	.	+	0	Parent=Os01t0938200-01
Chr01	irgsp1_rep	CDS	41198248	41198391	.	+	2	Parent=Os01t0938200-01
Chr01	irgsp1_rep	CDS	41198495	41198625	.	+	2	Parent=Os01t0938200-01
Chr01	irgsp1_rep	three_prime_UTR	41198626	41198903	.	+	.	Parent=Os01t0938200-01
Chr01	irgsp1_rep	mRNA	41201559	41202284	.	-	.	ID=Os01t0938400-01;Name=Os01t0938400-01;Locus_id=Os01g0938400;Note=Conserved hypothetical protein.;Transcript_evidence=AK062398 (DDBJ%2C Best hit);ORF_evidence=A2WYW2 (UniProt);NIAS_FLcDNA=001-102-D10;Expression=AK062398;TENOR=Os01t0938400-01;KEGG=Os01t0938400-01
Chr01	irgsp1_rep	five_prime_UTR	41202200	41202284	.	-	.	Parent=Os01t0938400-01
Chr01	irgsp1_rep	CDS	41201690	41202199	.	-	0	Parent=Os01t0938400-01
Chr01	irgsp1_rep	three_prime_UTR	41201559	41201689	.	-	.	Parent=Os01t0938400-01
Chr01	irgsp1_rep	mRNA	41203849	41208693	.	-	.	ID=Os01t0938600-01;Name=Os01t0938600-01;Locus_id=Os01g0938600;Note=Conserved hypothetical protein.;Transcript_evidence=AK073733 (DDBJ%2C Best hit);ORF_evidence=B8A973 (UniProt);NIAS_FLcDNA=J033059B18;Expression=AK073733;TENOR=Os01t0938600-01;KEGG=Os01t0938600-01
Chr01	irgsp1_rep	five_prime_UTR	41208475	41208693	.	-	.	Parent=Os01t0938600-01
Chr01	irgsp1_rep	CDS	41208180	41208474	.	-	0	Parent=Os01t0938600-01
Chr01	irgsp1_rep	CDS	41207046	41207155	.	-	2	Parent=Os01t0938600-01
Chr01	irgsp1_rep	CDS	41206602	41206970	.	-	0	Parent=Os01t0938600-01
Chr01	irgsp1_rep	CDS	41205202	41205886	.	-	0	Parent=Os01t0938600-01
Chr01	irgsp1_rep	CDS	41204328	41204410	.	-	2	Parent=Os01t0938600-01
Chr01	irgsp1_rep	three_prime_UTR	41203849	41204327	.	-	.	Parent=Os01t0938600-01
Chr01	irgsp1_rep	mRNA	41214311	41216976	.	+	.	ID=Os01t0938900-01;Name=Os01t0938900-01;Locus_id=Os01g0938900;Note=Similar to Nascent polypeptide-associated complex alpha subunit-like protein 3 (NAC-alpha-like protein 3) (Alpha-NAC-like protein 3).;Transcript_evidence=AK109341 (DDBJ%2C Best hit);ORF_evidence=A2PYH3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal (IPR000449),Nascent polypeptide-associated complex NAC (IPR002715),Nascent polypeptide-associated complex%2C alpha subunit (IPR016641);NIAS_FLcDNA=006-202-F04;Expression=AK109341;TENOR=Os01t0938900-01;KEGG=Os01t0938900-01
Chr01	irgsp1_rep	five_prime_UTR	41214311	41214422	.	+	.	Parent=Os01t0938900-01
Chr01	irgsp1_rep	CDS	41214423	41214485	.	+	0	Parent=Os01t0938900-01
Chr01	irgsp1_rep	CDS	41215342	41215423	.	+	0	Parent=Os01t0938900-01
Chr01	irgsp1_rep	CDS	41216228	41216358	.	+	2	Parent=Os01t0938900-01
Chr01	irgsp1_rep	CDS	41216456	41216788	.	+	0	Parent=Os01t0938900-01
Chr01	irgsp1_rep	three_prime_UTR	41216789	41216976	.	+	.	Parent=Os01t0938900-01
Chr01	irgsp1_rep	mRNA	41214333	41217063	.	+	.	ID=Os01t0938900-02;Name=Os01t0938900-02;Locus_id=Os01g0938900;Note=Similar to Nascent polypeptide-associated complex alpha subunit-like protein 3 (NAC-alpha-like protein 3) (Alpha-NAC-like protein 3).;Transcript_evidence=AK101971 (DDBJ%2C Best hit),AK059437 (DDBJ%2C Best hit);ORF_evidence=A2PYH3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal (IPR000449),Nascent polypeptide-associated complex NAC (IPR002715),Nascent polypeptide-associated complex%2C alpha subunit (IPR016641);NIAS_FLcDNA=J033076L24,001-027-G10;TENOR=Os01t0938900-02
Chr01	irgsp1_rep	five_prime_UTR	41214333	41214422	.	+	.	Parent=Os01t0938900-02
Chr01	irgsp1_rep	CDS	41214423	41214485	.	+	0	Parent=Os01t0938900-02
Chr01	irgsp1_rep	CDS	41215342	41215423	.	+	0	Parent=Os01t0938900-02
Chr01	irgsp1_rep	CDS	41216228	41216358	.	+	2	Parent=Os01t0938900-02
Chr01	irgsp1_rep	CDS	41216456	41216788	.	+	0	Parent=Os01t0938900-02
Chr01	irgsp1_rep	three_prime_UTR	41216789	41217063	.	+	.	Parent=Os01t0938900-02
Chr01	irgsp1_rep	mRNA	41217684	41219803	.	+	.	ID=Os01t0939000-01;Name=Os01t0939000-01;Locus_id=Os01g0939000;Note=Conserved hypothetical protein.;Transcript_evidence=AK109291 (DDBJ%2C Best hit);ORF_evidence=B8A974 (UniProt);NIAS_FLcDNA=002-188-C10;Expression=AK109291;TENOR=Os01t0939000-01;KEGG=Os01t0939000-01
Chr01	irgsp1_rep	five_prime_UTR	41217684	41217913	.	+	.	Parent=Os01t0939000-01
Chr01	irgsp1_rep	five_prime_UTR	41219005	41219048	.	+	.	Parent=Os01t0939000-01
Chr01	irgsp1_rep	CDS	41219049	41219188	.	+	0	Parent=Os01t0939000-01
Chr01	irgsp1_rep	CDS	41219323	41219416	.	+	1	Parent=Os01t0939000-01
Chr01	irgsp1_rep	three_prime_UTR	41219417	41219803	.	+	.	Parent=Os01t0939000-01
Chr01	irgsp1_rep	mRNA	41220037	41227329	.	+	.	ID=Os01t0939100-01;Name=Os01t0939100-01;Locus_id=Os01g0939100;CGSNL Gene Symbol=ACA6;CGSNL Gene Name=CA2+-ATPASE 6;Oryzabase Gene Symbol Synonym(s)=osACA6%2C OsACA1%2C OsACA6%2C OsPM1ATPaseII%2C ACA3;Oryzabase Gene Name Synonym(s)=Ca2+ P-Type ATPase 6%2C vacuolar Ca2+-ATPase 6%2C auto-inhibited Ca2+-ATPase 3;Note=Similar to Calmodulin-stimulated calcium-ATPase.;Transcript_evidence=AK070064 (DDBJ%2C Best hit);ORF_evidence=XP_002332421.1 (RefSeq);GO=Biological Process: ATP biosynthetic process (GO:0006754),Biological Process: cation transport (GO:0006812),Biological Process: metabolic process (GO:0008152),Biological Process: calcium ion transmembrane transport (GO:0070588),Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: calcium-transporting ATPase activity (GO:0005388),Molecular Function: calmodulin binding (GO:0005516),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662),Molecular Function: metal ion binding (GO:0046872);InterPro=ATPase%2C P-type%2C H+ transporting proton pump (IPR000695),ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),ATPase%2C P-type cation-transporter%2C N-terminal (IPR004014),Haloacid dehalogenase-like hydrolase (IPR005834),ATPase%2C P-type cation-transporter%2C C-terminal (IPR006068),ATPase%2C P-type%2C calcium-transporting%2C PMCA-type (IPR006408),ATPase%2C P-type%2C ATPase-associated domain (IPR008250),ATPase%2C P-type phosphorylation site (IPR018303),HAD-like domain (IPR023214),ATPase%2C P-type%2C  transmembrane domain (IPR023298),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C  P-type%2C cytoplasmic transduction domain A (IPR023300),Calcium-transporting ATPase%2C N-terminal autoinhibitory domain (IPR024750);NIAS_FLcDNA=J023041B03;Oryzabase=13238;Expression=AK070064;TENOR=Os01t0939100-01;KEGG=Os01t0939100-01
Chr01	irgsp1_rep	five_prime_UTR	41220037	41220368	.	+	.	Parent=Os01t0939100-01
Chr01	irgsp1_rep	CDS	41220369	41220563	.	+	0	Parent=Os01t0939100-01
Chr01	irgsp1_rep	CDS	41222797	41222851	.	+	0	Parent=Os01t0939100-01
Chr01	irgsp1_rep	CDS	41222977	41224917	.	+	2	Parent=Os01t0939100-01
Chr01	irgsp1_rep	CDS	41225002	41225162	.	+	2	Parent=Os01t0939100-01
Chr01	irgsp1_rep	CDS	41225524	41225695	.	+	0	Parent=Os01t0939100-01
Chr01	irgsp1_rep	CDS	41225814	41226112	.	+	2	Parent=Os01t0939100-01
Chr01	irgsp1_rep	CDS	41226701	41227009	.	+	0	Parent=Os01t0939100-01
Chr01	irgsp1_rep	three_prime_UTR	41227010	41227329	.	+	.	Parent=Os01t0939100-01
Chr01	irgsp1_rep	mRNA	41225542	41225922	.	-	.	ID=Os01t0939150-00;Name=Os01t0939150-00;Locus_id=Os01g0939150;Note=Non-protein coding transcript.;Transcript_evidence=EU971904 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0939150-00
Chr01	irgsp1_rep	exon	41225542	41225922	.	-	.	Parent=Os01t0939150-00
Chr01	irgsp1_rep	mRNA	41227384	41229462	.	-	.	ID=Os01t0939200-01;Name=Os01t0939200-01;Locus_id=Os01g0939200;Note=Conserved hypothetical protein.;Transcript_evidence=AK110814 (DDBJ%2C Best hit);ORF_evidence=B9EWD6 (UniProt);NIAS_FLcDNA=002-171-F08;TENOR=Os01t0939200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	41229462	41229462	.	-	.	Parent=Os01t0939200-01
Chr01	irgsp1_rep	CDS	41228452	41229461	.	-	0	Parent=Os01t0939200-01
Chr01	irgsp1_rep	CDS	41228297	41228366	.	-	1	Parent=Os01t0939200-01
Chr01	irgsp1_rep	CDS	41228191	41228196	.	-	0	Parent=Os01t0939200-01
Chr01	irgsp1_rep	three_prime_UTR	41228123	41228190	.	-	.	Parent=Os01t0939200-01
Chr01	irgsp1_rep	three_prime_UTR	41227384	41227811	.	-	.	Parent=Os01t0939200-01
Chr01	irgsp1_rep	mRNA	41230854	41235586	.	-	.	ID=Os01t0939300-01;Name=Os01t0939300-01;Locus_id=Os01g0939300;Note=BRCT domain containing protein.;Transcript_evidence=AK101079 (DDBJ%2C Best hit),AK064555 (DDBJ%2C Best hit);ORF_evidence=B8A975 (UniProt);GO=Cellular Component: intracellular (GO:0005622);InterPro=BRCT (IPR001357);NIAS_FLcDNA=J033024C23,002-112-C04;TENOR=Os01t0939300-01
Chr01	irgsp1_rep	five_prime_UTR	41235453	41235586	.	-	.	Parent=Os01t0939300-01
Chr01	irgsp1_rep	five_prime_UTR	41234143	41234151	.	-	.	Parent=Os01t0939300-01
Chr01	irgsp1_rep	CDS	41232676	41234142	.	-	0	Parent=Os01t0939300-01
Chr01	irgsp1_rep	CDS	41232312	41232581	.	-	0	Parent=Os01t0939300-01
Chr01	irgsp1_rep	CDS	41232072	41232152	.	-	0	Parent=Os01t0939300-01
Chr01	irgsp1_rep	CDS	41231381	41231489	.	-	0	Parent=Os01t0939300-01
Chr01	irgsp1_rep	CDS	41231228	41231294	.	-	2	Parent=Os01t0939300-01
Chr01	irgsp1_rep	CDS	41231097	41231118	.	-	1	Parent=Os01t0939300-01
Chr01	irgsp1_rep	three_prime_UTR	41230854	41231096	.	-	.	Parent=Os01t0939300-01
Chr01	irgsp1_rep	mRNA	41236412	41238794	.	-	.	ID=Os01t0939400-01;Name=Os01t0939400-01;Locus_id=Os01g0939400;Note=Conserved hypothetical protein.;Transcript_evidence=AK107946 (DDBJ%2C Best hit);ORF_evidence=B8A976 (UniProt);NIAS_FLcDNA=002-135-B06;Expression=AK107946;TENOR=Os01t0939400-01;KEGG=Os01t0939400-01
Chr01	irgsp1_rep	five_prime_UTR	41238778	41238794	.	-	.	Parent=Os01t0939400-01
Chr01	irgsp1_rep	CDS	41238605	41238777	.	-	0	Parent=Os01t0939400-01
Chr01	irgsp1_rep	CDS	41237038	41237301	.	-	1	Parent=Os01t0939400-01
Chr01	irgsp1_rep	CDS	41236768	41236825	.	-	1	Parent=Os01t0939400-01
Chr01	irgsp1_rep	three_prime_UTR	41236412	41236767	.	-	.	Parent=Os01t0939400-01
Chr01	irgsp1_rep	mRNA	41242455	41243872	.	-	.	ID=Os01t0939450-00;Name=Os01t0939450-00;Locus_id=Os01g0939450;Note=Non-protein coding transcript.;Transcript_evidence=tplb0034d14 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os01t0939450-00
Chr01	irgsp1_rep	exon	41242455	41243872	.	-	.	Parent=Os01t0939450-00
Chr01	irgsp1_rep	mRNA	41242467	41243777	.	+	.	ID=Os01t0939500-00;Name=Os01t0939500-00;Locus_id=Os01g0939500;Note=Similar to Eukaryotic peptide chain release factor subunit 1-2 (eRF1-2) (Eukaryotic release factor 1-2) (Omnipotent suppressor protein 1 homolog 2) (SUP1 homolog 2).;Transcript_evidence=Q39097 (UniProt);ORF_evidence=Q39097 (UniProt);GO=Biological Process: translational termination (GO:0006415),Cellular Component: cytoplasm (GO:0005737),Molecular Function: translation release factor activity%2C codon specific (GO:0016149);InterPro=Peptide chain release factor eRF1/aRF1 (IPR004403),eRF1 domain 1/Pelota-like (IPR005140),eRF1 domain 2 (IPR005141),eRF1 domain 3 (IPR005142),Peptide Chain Release Factor eRF1/aRF1%2C N-terminal (IPR024049);TENOR=Os01t0939500-00
Chr01	irgsp1_rep	CDS	41242467	41243777	.	+	0	Parent=Os01t0939500-00
Chr01	irgsp1_rep	mRNA	41243980	41244372	.	+	.	ID=Os01t0939550-01;Name=Os01t0939550-01;Locus_id=Os01g0939550;Note=Non-protein coding transcript.;Transcript_evidence=AK242534 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080316L02;TENOR=Os01t0939550-01
Chr01	irgsp1_rep	exon	41243980	41244372	.	+	.	Parent=Os01t0939550-01
Chr01	irgsp1_rep	mRNA	41245588	41249894	.	+	.	ID=Os01t0939600-01;Name=Os01t0939600-01;Locus_id=Os01g0939600;Oryzabase Gene Symbol Synonym(s)=GPDH2%2C OsGPDH1-2;Oryzabase Gene Name Synonym(s)=glycerol-3-phosphate dehydrogenase 2;Note=Similar to Glycerol-3-phosphate dehydrogenase-like protein (Fragment).;Transcript_evidence=AK068569 (DDBJ%2C Best hit);ORF_evidence=NP_181685.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: glycerol-3-phosphate metabolic process (GO:0006072),Biological Process: glycerol-3-phosphate catabolic process (GO:0046168),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: cytoplasm (GO:0005737),Cellular Component: glycerol-3-phosphate dehydrogenase complex (GO:0009331),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: glycerol-3-phosphate dehydrogenase [NAD+] activity (GO:0004367),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: coenzyme binding (GO:0050662),Molecular Function: NAD binding (GO:0051287);InterPro=Glycerol-3-phosphate dehydrogenase%2C NAD-dependent%2C C-terminal (IPR006109),Glycerol-3-phosphate dehydrogenase%2C NAD-dependent (IPR006168),6-phosphogluconate dehydrogenase%2C C-terminal-like (IPR008927),Glycerol-3-phosphate dehydrogenase%2C NAD-dependent%2C N-terminal (IPR011128),Dehydrogenase%2C multihelical (IPR013328),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013154E21;Oryzabase=18140;Expression=AK068569;TENOR=Os01t0939600-01;KEGG=Os01t0939600-01
Chr01	irgsp1_rep	five_prime_UTR	41245588	41245828	.	+	.	Parent=Os01t0939600-01
Chr01	irgsp1_rep	five_prime_UTR	41245910	41246150	.	+	.	Parent=Os01t0939600-01
Chr01	irgsp1_rep	CDS	41246151	41246787	.	+	0	Parent=Os01t0939600-01
Chr01	irgsp1_rep	CDS	41247717	41247938	.	+	2	Parent=Os01t0939600-01
Chr01	irgsp1_rep	CDS	41248550	41248797	.	+	2	Parent=Os01t0939600-01
Chr01	irgsp1_rep	CDS	41248937	41249076	.	+	0	Parent=Os01t0939600-01
Chr01	irgsp1_rep	CDS	41249545	41249668	.	+	1	Parent=Os01t0939600-01
Chr01	irgsp1_rep	three_prime_UTR	41249669	41249894	.	+	.	Parent=Os01t0939600-01
Chr01	irgsp1_rep	mRNA	41251235	41272093	.	+	.	ID=Os01t0939700-01;Name=Os01t0939700-01;Locus_id=Os01g0939700;Note=Similar to Esterase D (EC 3.1.1.1).;Transcript_evidence=AK070588 (DDBJ%2C Best hit),AK059803 (DDBJ%2C Best hit);ORF_evidence=NP_001148438.1 (RefSeq);GO=Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023),Molecular Function: carboxylesterase activity (GO:0004091),Molecular Function: S-formylglutathione hydrolase activity (GO:0018738);InterPro=Putative esterase (IPR000801),S-formylglutathione hydrolase (IPR014186);NIAS_FLcDNA=J023061H06,006-204-G02;TENOR=Os01t0939700-01
Chr01	irgsp1_rep	five_prime_UTR	41251235	41251326	.	+	.	Parent=Os01t0939700-01
Chr01	irgsp1_rep	CDS	41251327	41251494	.	+	0	Parent=Os01t0939700-01
Chr01	irgsp1_rep	CDS	41251577	41251694	.	+	0	Parent=Os01t0939700-01
Chr01	irgsp1_rep	CDS	41253126	41253173	.	+	2	Parent=Os01t0939700-01
Chr01	irgsp1_rep	CDS	41270243	41270439	.	+	2	Parent=Os01t0939700-01
Chr01	irgsp1_rep	CDS	41270599	41270697	.	+	0	Parent=Os01t0939700-01
Chr01	irgsp1_rep	CDS	41270796	41270861	.	+	0	Parent=Os01t0939700-01
Chr01	irgsp1_rep	CDS	41271714	41271896	.	+	0	Parent=Os01t0939700-01
Chr01	irgsp1_rep	three_prime_UTR	41271897	41272093	.	+	.	Parent=Os01t0939700-01
Chr01	irgsp1_rep	mRNA	41251260	41268578	.	+	.	ID=Os01t0939700-02;Name=Os01t0939700-02;Locus_id=Os01g0939700;Note=Similar to esterase D.;Transcript_evidence=AK111469 (DDBJ%2C Best hit);ORF_evidence=NP_001148438.1 (RefSeq);GO=Cellular Component: cytoplasmic membrane-bounded vesicle (GO:0016023),Molecular Function: carboxylesterase activity (GO:0004091),Molecular Function: S-formylglutathione hydrolase activity (GO:0018738);InterPro=Putative esterase (IPR000801),S-formylglutathione hydrolase (IPR014186);NIAS_FLcDNA=002-183-E01;Expression=AK111469;TENOR=Os01t0939700-02;KEGG=Os01t0939700-02
Chr01	irgsp1_rep	five_prime_UTR	41251260	41251326	.	+	.	Parent=Os01t0939700-02
Chr01	irgsp1_rep	CDS	41251327	41251494	.	+	0	Parent=Os01t0939700-02
Chr01	irgsp1_rep	CDS	41251577	41251694	.	+	0	Parent=Os01t0939700-02
Chr01	irgsp1_rep	CDS	41253126	41253173	.	+	2	Parent=Os01t0939700-02
Chr01	irgsp1_rep	CDS	41267924	41267967	.	+	2	Parent=Os01t0939700-02
Chr01	irgsp1_rep	three_prime_UTR	41267968	41268578	.	+	.	Parent=Os01t0939700-02
Chr01	irgsp1_rep	mRNA	41260929	41265391	.	+	.	ID=Os01t0939800-01;Name=Os01t0939800-01;Locus_id=Os01g0939800;Note=Hypothetical protein.;Transcript_evidence=AK121367 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023125F18;Expression=AK121367;TENOR=Os01t0939800-01;KEGG=Os01t0939800-01
Chr01	irgsp1_rep	five_prime_UTR	41260929	41262478	.	+	.	Parent=Os01t0939800-01
Chr01	irgsp1_rep	CDS	41262479	41262733	.	+	0	Parent=Os01t0939800-01
Chr01	irgsp1_rep	three_prime_UTR	41262734	41265391	.	+	.	Parent=Os01t0939800-01
Chr01	irgsp1_rep	mRNA	41267049	41267308	.	+	.	ID=Os01t0939901-00;Name=Os01t0939901-00;Locus_id=Os01g0939901;Note=Non-protein coding transcript.;Transcript_evidence=CT834966 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os01t0939901-00
Chr01	irgsp1_rep	exon	41267049	41267308	.	+	.	Parent=Os01t0939901-00
Chr01	irgsp1_rep	mRNA	41300203	41302983	.	+	.	ID=Os01t0940000-01;Name=Os01t0940000-01;Locus_id=Os01g0940000;RAP-DB Gene Symbol Synonym(s)=CKX4%2C OsCKX4%2C ckx4%2C OsSCRM%2C OsSCRM2%2C SCRM%2C SCRM2;RAP-DB Gene Name Synonym(s)=CYTOKININ OXIDASE/DEHYDROGENASE 4%2C Putative cytokinin dehydrogenase 4%2C cytokinin oxidase 4;CGSNL Gene Symbol=CKX4;CGSNL Gene Name=CYTOKININ OXIDASE/DEHYDROGENASE 4;Oryzabase Gene Symbol Synonym(s)=OsCKX4%2C ckx4%2C OsSCRM%2C OsSCRM2%2C SCRM%2C SCRM2;Oryzabase Gene Name Synonym(s)=Putative cytokinin dehydrogenase 4%2C cytokinin oxidase 4;Note=Cytokinin oxidase/dehydrogenase%2C Crown root formation;Transcript_evidence=AK121317;ORF_evidence=Q5JLP4;GO=Biological Process: cytokinin metabolic process (GO:0009690),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: cytokinin dehydrogenase activity (GO:0019139),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=FAD-binding%2C type 2%2C subdomain 1 (IPR016167),FAD-binding%2C type 2 (IPR016166),FAD linked oxidase%2C N-terminal (IPR006094),CO dehydrogenase flavoprotein-like%2C FAD-binding%2C subdomain 2 (IPR016169),FAD-linked oxidase-like%2C C-terminal (IPR016164),Cytokinin dehydrogenase 1%2C FAD/cytokinin binding domain (IPR015345),Vanillyl-alcohol oxidase/Cytokinin dehydrogenase C-terminal domain (IPR016170),Oxygen oxidoreductase covalent FAD-binding site (IPR006093);NIAS_FLcDNA=J023113D01;Manual Curation=July 9%2C 2014;Literature_PMID=24808099,17293362;Oryzabase=8394;TENOR=Os01t0940000-01;KEGG=Os01t0940000-01
Chr01	irgsp1_rep	five_prime_UTR	41300203	41300428	.	+	.	Parent=Os01t0940000-01
Chr01	irgsp1_rep	CDS	41300429	41301041	.	+	0	Parent=Os01t0940000-01
Chr01	irgsp1_rep	CDS	41301163	41301290	.	+	2	Parent=Os01t0940000-01
Chr01	irgsp1_rep	CDS	41301400	41301660	.	+	0	Parent=Os01t0940000-01
Chr01	irgsp1_rep	CDS	41301795	41302057	.	+	0	Parent=Os01t0940000-01
Chr01	irgsp1_rep	CDS	41302148	41302472	.	+	1	Parent=Os01t0940000-01
Chr01	irgsp1_rep	three_prime_UTR	41302473	41302983	.	+	.	Parent=Os01t0940000-01
Chr01	irgsp1_rep	mRNA	41305718	41311135	.	-	.	ID=Os01t0940100-01;Name=Os01t0940100-01;Locus_id=Os01g0940100;CGSNL Gene Symbol=HXK3;CGSNL Gene Name=HEXOKINASE-3;Oryzabase Gene Symbol Synonym(s)=OsHXK3;Oryzabase Gene Name Synonym(s)=Hexokinase 3;Note=Similar to Hexokinase.;Transcript_evidence=AK107602 (DDBJ%2C Best hit);ORF_evidence=Q2KNB4 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: glycolysis (GO:0006096),Molecular Function: hexokinase activity (GO:0004396),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Hexokinase (IPR001312),Hexokinase%2C conserved site (IPR019807),Hexokinase%2C N-terminal (IPR022672),Hexokinase%2C C-terminal (IPR022673);NIAS_FLcDNA=002-131-B07;Oryzabase=9004;Expression=AK107602;TENOR=Os01t0940100-01;KEGG=Os01t0940100-01 (EC:2.7.1.1)
Chr01	irgsp1_rep	CDS	41310977	41311135	.	-	0	Parent=Os01t0940100-01
Chr01	irgsp1_rep	CDS	41308350	41308424	.	-	0	Parent=Os01t0940100-01
Chr01	irgsp1_rep	CDS	41306920	41307075	.	-	0	Parent=Os01t0940100-01
Chr01	irgsp1_rep	CDS	41306700	41306798	.	-	0	Parent=Os01t0940100-01
Chr01	irgsp1_rep	CDS	41306491	41306618	.	-	0	Parent=Os01t0940100-01
Chr01	irgsp1_rep	CDS	41306289	41306370	.	-	1	Parent=Os01t0940100-01
Chr01	irgsp1_rep	CDS	41305825	41306199	.	-	0	Parent=Os01t0940100-01
Chr01	irgsp1_rep	three_prime_UTR	41305718	41305824	.	-	.	Parent=Os01t0940100-01
Chr01	irgsp1_rep	mRNA	41305317	41307138	.	-	.	ID=Os01t0940100-02;Name=Os01t0940100-02;Locus_id=Os01g0940100;CGSNL Gene Symbol=HXK3;CGSNL Gene Name=HEXOKINASE-3;Oryzabase Gene Symbol Synonym(s)=OsHXK3;Oryzabase Gene Name Synonym(s)=Hexokinase 3;Note=Similar to Hexokinase-3.;Transcript_evidence=AK064590 (DDBJ%2C Best hit);ORF_evidence=Q2KNB4 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Hexokinase (IPR001312),Hexokinase%2C C-terminal (IPR022673);NIAS_FLcDNA=002-112-G04;Oryzabase=9004;TENOR=Os01t0940100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	41306643	41307138	.	-	.	Parent=Os01t0940100-02
Chr01	irgsp1_rep	CDS	41306421	41306642	.	-	0	Parent=Os01t0940100-02
Chr01	irgsp1_rep	three_prime_UTR	41305317	41306420	.	-	.	Parent=Os01t0940100-02
Chr01	irgsp1_rep	mRNA	41343327	41344264	.	+	.	ID=Os01t0940600-01;Name=Os01t0940600-01;Locus_id=Os01g0940600;Note=Conserved hypothetical protein.;Transcript_evidence=AK070587 (DDBJ%2C Best hit);ORF_evidence=A2WYX4 (UniProt);NIAS_FLcDNA=J023062H24;Expression=AK070587;TENOR=Os01t0940600-01;KEGG=Os01t0940600-01
Chr01	irgsp1_rep	five_prime_UTR	41343327	41343392	.	+	.	Parent=Os01t0940600-01
Chr01	irgsp1_rep	CDS	41343393	41343662	.	+	0	Parent=Os01t0940600-01
Chr01	irgsp1_rep	CDS	41343764	41343931	.	+	0	Parent=Os01t0940600-01
Chr01	irgsp1_rep	three_prime_UTR	41343932	41344264	.	+	.	Parent=Os01t0940600-01
Chr01	irgsp1_rep	mRNA	41346647	41348356	.	+	.	ID=Os01t0940700-01;Name=Os01t0940700-01;Locus_id=Os01g0940700;Oryzabase Gene Symbol Synonym(s)=OsPR2%2C PR2%2C OsGlu1%2C Glu1;Oryzabase Gene Name Synonym(s)=beta-1%2C 3-glucanase%2C pathogenesis-related protein 2;Note=Similar to Glucan endo-1%2C3-beta-glucosidase GII precursor (EC 3.2.1.39) ((1->3)- beta-glucan endohydrolase GII) ((1->3)-beta-glucanase isoenzyme GII) (Beta-1%2C3-endoglucanase GII).;Transcript_evidence=AK060802 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-033-F06;Oryzabase=12545;Expression=AK060802;TENOR=Os01t0940700-01;KEGG=Os01t0940700-01 (EC:3.2.1.39)
Chr01	irgsp1_rep	five_prime_UTR	41346647	41346748	.	+	.	Parent=Os01t0940700-01
Chr01	irgsp1_rep	CDS	41346749	41346818	.	+	0	Parent=Os01t0940700-01
Chr01	irgsp1_rep	CDS	41347249	41347433	.	+	2	Parent=Os01t0940700-01
Chr01	irgsp1_rep	CDS	41347611	41348171	.	+	0	Parent=Os01t0940700-01
Chr01	irgsp1_rep	three_prime_UTR	41348172	41348356	.	+	.	Parent=Os01t0940700-01
Chr01	irgsp1_rep	mRNA	41346648	41348373	.	+	.	ID=Os01t0940700-02;Name=Os01t0940700-02;Locus_id=Os01g0940700;Oryzabase Gene Symbol Synonym(s)=OsPR2%2C PR2%2C OsGlu1%2C Glu1;Oryzabase Gene Name Synonym(s)=beta-1%2C 3-glucanase%2C pathogenesis-related protein 2;Note=Similar to Beta 1%2C3-glucanase.;Transcript_evidence=AK104862 (DDBJ%2C Best hit),AK070677 (DDBJ%2C Best hit);ORF_evidence=Q9SXY6 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-043-E09,J023063O17;Oryzabase=12545;TENOR=Os01t0940700-02
Chr01	irgsp1_rep	five_prime_UTR	41346648	41346748	.	+	.	Parent=Os01t0940700-02
Chr01	irgsp1_rep	CDS	41346749	41346818	.	+	0	Parent=Os01t0940700-02
Chr01	irgsp1_rep	CDS	41347249	41348171	.	+	2	Parent=Os01t0940700-02
Chr01	irgsp1_rep	three_prime_UTR	41348172	41348373	.	+	.	Parent=Os01t0940700-02
Chr01	irgsp1_rep	mRNA	41349731	41351118	.	+	.	ID=Os01t0940800-01;Name=Os01t0940800-01;Locus_id=Os01g0940800;CGSNL Gene Symbol=GNS6;CGSNL Gene Name=BETA-1%2C3-GLUCANASE 6;Oryzabase Gene Symbol Synonym(s)=Gns6%2C OsGns6;Oryzabase Gene Name Synonym(s)=beta-1%2C 3-glucanase 6;Note=Similar to Beta-1%2C3-glucanase precursor.;Transcript_evidence=AK068247 (DDBJ%2C Best hit),AK105972 (DDBJ%2C Best hit);ORF_evidence=Q9ZNY9 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J013136H16,001-205-F03;Oryzabase=13924;TENOR=Os01t0940800-01
Chr01	irgsp1_rep	five_prime_UTR	41349731	41349758	.	+	.	Parent=Os01t0940800-01
Chr01	irgsp1_rep	CDS	41349759	41349822	.	+	0	Parent=Os01t0940800-01
Chr01	irgsp1_rep	CDS	41349967	41350901	.	+	2	Parent=Os01t0940800-01
Chr01	irgsp1_rep	three_prime_UTR	41350902	41351118	.	+	.	Parent=Os01t0940800-01
Chr01	irgsp1_rep	mRNA	41365160	41366543	.	+	.	ID=Os01t0941200-01;Name=Os01t0941200-01;Locus_id=Os01g0941200;Note=Similar to Glucan endo-1%2C3-beta-glucosidase GII precursor (EC 3.2.1.39) ((1->3)- beta-glucan endohydrolase GII) ((1->3)-beta-glucanase isoenzyme GII) (Beta-1%2C3-endoglucanase GII).;Transcript_evidence=AK243560 (DDBJ%2C Best hit);ORF_evidence=Q8W4V0 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J100080E04;TENOR=Os01t0941200-01;KEGG=Os01t0941200-01 (EC:3.2.1.39)
Chr01	irgsp1_rep	five_prime_UTR	41365160	41365208	.	+	.	Parent=Os01t0941200-01
Chr01	irgsp1_rep	CDS	41365209	41365281	.	+	0	Parent=Os01t0941200-01
Chr01	irgsp1_rep	CDS	41365434	41366365	.	+	2	Parent=Os01t0941200-01
Chr01	irgsp1_rep	three_prime_UTR	41366366	41366543	.	+	.	Parent=Os01t0941200-01
Chr01	irgsp1_rep	mRNA	41375254	41376297	.	+	.	ID=Os01t0941500-00;Name=Os01t0941500-00;Locus_id=Os01g0941500;Note=Similar to Beta-1%2C3-glucanase.;Transcript_evidence=DQ244526 (DDBJ);ORF_evidence=Q9XEN5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);TENOR=Os01t0941500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	41375254	41376297	.	+	0	Parent=Os01t0941500-00
Chr01	irgsp1_rep	mRNA	41384339	41386372	.	-	.	ID=Os01t0941800-01;Name=Os01t0941800-01;Locus_id=Os01g0941800;Note=Metallophosphoesterase domain containing protein.;Transcript_evidence=AK107393 (DDBJ%2C Best hit);ORF_evidence=XP_002884780.1 (RefSeq);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Metallophosphoesterase domain (IPR004843),Phosphoesterase At2g46880 (IPR011230);NIAS_FLcDNA=002-127-D02;Expression=AK107393;TENOR=Os01t0941800-01;KEGG=Os01t0941800-01
Chr01	irgsp1_rep	five_prime_UTR	41386221	41386372	.	-	.	Parent=Os01t0941800-01
Chr01	irgsp1_rep	CDS	41385950	41386220	.	-	0	Parent=Os01t0941800-01
Chr01	irgsp1_rep	CDS	41385652	41385876	.	-	2	Parent=Os01t0941800-01
Chr01	irgsp1_rep	CDS	41385220	41385484	.	-	2	Parent=Os01t0941800-01
Chr01	irgsp1_rep	CDS	41384962	41385136	.	-	1	Parent=Os01t0941800-01
Chr01	irgsp1_rep	CDS	41384600	41384812	.	-	0	Parent=Os01t0941800-01
Chr01	irgsp1_rep	three_prime_UTR	41384339	41384599	.	-	.	Parent=Os01t0941800-01
Chr01	irgsp1_rep	mRNA	41384454	41386342	.	-	.	ID=Os01t0941800-02;Name=Os01t0941800-02;Locus_id=Os01g0941800;Note=Similar to predicted protein.;Transcript_evidence=AK102443 (DDBJ%2C Best hit);ORF_evidence=A2WYY0 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Metallophosphoesterase domain (IPR004843);NIAS_FLcDNA=J033093N14;Expression=AK102443;TENOR=Os01t0941800-02;KEGG=Os01t0941800-02
Chr01	irgsp1_rep	five_prime_UTR	41386221	41386342	.	-	.	Parent=Os01t0941800-02
Chr01	irgsp1_rep	CDS	41385950	41386220	.	-	0	Parent=Os01t0941800-02
Chr01	irgsp1_rep	CDS	41385626	41385876	.	-	2	Parent=Os01t0941800-02
Chr01	irgsp1_rep	three_prime_UTR	41385220	41385625	.	-	.	Parent=Os01t0941800-02
Chr01	irgsp1_rep	three_prime_UTR	41384454	41385136	.	-	.	Parent=Os01t0941800-02
Chr01	irgsp1_rep	mRNA	41394739	41396203	.	-	.	ID=Os01t0942200-01;Name=Os01t0942200-01;Locus_id=Os01g0942200;Oryzabase Gene Symbol Synonym(s)=OsFbox057%2C OsFbox57%2C Os_F0570;Oryzabase Gene Name Synonym(s)=F-box protein 57;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK063265 (DDBJ%2C Best hit);ORF_evidence=A2WYY4 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174);NIAS_FLcDNA=001-113-A12;Oryzabase=16855;Expression=AK063265;TENOR=Os01t0942200-01;KEGG=Os01t0942200-01
Chr01	irgsp1_rep	five_prime_UTR	41396130	41396203	.	-	.	Parent=Os01t0942200-01
Chr01	irgsp1_rep	CDS	41394807	41396129	.	-	0	Parent=Os01t0942200-01
Chr01	irgsp1_rep	three_prime_UTR	41394739	41394806	.	-	.	Parent=Os01t0942200-01
Chr01	irgsp1_rep	mRNA	41398051	41399089	.	-	.	ID=Os01t0942300-01;Name=Os01t0942300-01;Locus_id=Os01g0942300;RAP-DB Gene Symbol Synonym(s)=OsEGL2;RAP-DB Gene Name Synonym(s)=endo-(1%2C3%3B1%2C4)-&beta%3B-glucanase 2;Oryzabase Gene Symbol Synonym(s)=OsEGL2;Oryzabase Gene Name Synonym(s)=endo-(1%2C3%3B1%2C4)-beta-glucanase 2;Note=Endo-(1%2C3%3B1%2C4)-&beta%3B-glucanase;Transcript_evidence=AK063126 (truncated),Inferred from literature;ORF_evidence=Q8S9P4;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase superfamily (IPR017853),Glycoside hydrolase family 17 (IPR000490);NIAS_FLcDNA=001-111-F01 (truncated);Manual Curation=October 28%2C 2020;Literature_PMID=19570592;Oryzabase=14742;Expression=AK063126;TENOR=Os01t0942300-01;KEGG=Os01t0942300-01 (EC:3.2.1.73);B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	41398124	41399089	.	-	0	Parent=Os01t0942300-01
Chr01	irgsp1_rep	three_prime_UTR	41398051	41398123	.	-	.	Parent=Os01t0942300-01
Chr01	irgsp1_rep	mRNA	41439358	41447125	.	+	.	ID=Os01t0942900-01;Name=Os01t0942900-01;Locus_id=Os01g0942900;Note=Similar to cDNA clone:J023028M23%2C full insert sequence.;Transcript_evidence=AK243304 (DDBJ%2C Best hit);ORF_evidence=B7E3R6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J100054L12;TENOR=Os01t0942900-01;KEGG=Os01t0942900-01
Chr01	irgsp1_rep	five_prime_UTR	41439358	41439492	.	+	.	Parent=Os01t0942900-01
Chr01	irgsp1_rep	CDS	41439493	41439511	.	+	0	Parent=Os01t0942900-01
Chr01	irgsp1_rep	CDS	41440553	41440713	.	+	2	Parent=Os01t0942900-01
Chr01	irgsp1_rep	CDS	41440792	41440866	.	+	0	Parent=Os01t0942900-01
Chr01	irgsp1_rep	CDS	41441116	41441610	.	+	0	Parent=Os01t0942900-01
Chr01	irgsp1_rep	CDS	41442274	41442612	.	+	0	Parent=Os01t0942900-01
Chr01	irgsp1_rep	CDS	41445155	41445246	.	+	0	Parent=Os01t0942900-01
Chr01	irgsp1_rep	CDS	41445335	41445378	.	+	1	Parent=Os01t0942900-01
Chr01	irgsp1_rep	CDS	41445456	41445511	.	+	2	Parent=Os01t0942900-01
Chr01	irgsp1_rep	CDS	41446324	41446617	.	+	0	Parent=Os01t0942900-01
Chr01	irgsp1_rep	three_prime_UTR	41446618	41446625	.	+	.	Parent=Os01t0942900-01
Chr01	irgsp1_rep	three_prime_UTR	41446798	41447125	.	+	.	Parent=Os01t0942900-01
Chr01	irgsp1_rep	mRNA	41450316	41452427	.	+	.	ID=Os01t0943000-01;Name=Os01t0943000-01;Locus_id=Os01g0943000;Note=Hypothetical conserved gene.;Transcript_evidence=AK240931 (DDBJ%2C Best hit);ORF_evidence=Q94CS2 (UniProt);NIAS_FLcDNA=J065040K14;TENOR=Os01t0943000-01;KEGG=Os01t0943000-01
Chr01	irgsp1_rep	five_prime_UTR	41450316	41450553	.	+	.	Parent=Os01t0943000-01
Chr01	irgsp1_rep	CDS	41450554	41450685	.	+	0	Parent=Os01t0943000-01
Chr01	irgsp1_rep	CDS	41450759	41450961	.	+	0	Parent=Os01t0943000-01
Chr01	irgsp1_rep	CDS	41451154	41451205	.	+	1	Parent=Os01t0943000-01
Chr01	irgsp1_rep	three_prime_UTR	41451206	41451219	.	+	.	Parent=Os01t0943000-01
Chr01	irgsp1_rep	three_prime_UTR	41452041	41452427	.	+	.	Parent=Os01t0943000-01
Chr01	irgsp1_rep	mRNA	41454397	41458821	.	-	.	ID=Os01t0943100-00;Name=Os01t0943100-00;Locus_id=Os01g0943100;Note=Conserved hypothetical protein.;Transcript_evidence=EU956243 (DDBJ);ORF_evidence=A2ZPV3 (UniProt);TENOR=Os01t0943100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	41458388	41458821	.	-	.	Parent=Os01t0943100-00
Chr01	irgsp1_rep	CDS	41458292	41458387	.	-	0	Parent=Os01t0943100-00
Chr01	irgsp1_rep	CDS	41454672	41454919	.	-	0	Parent=Os01t0943100-00
Chr01	irgsp1_rep	CDS	41454543	41454582	.	-	1	Parent=Os01t0943100-00
Chr01	irgsp1_rep	three_prime_UTR	41454397	41454542	.	-	.	Parent=Os01t0943100-00
Chr01	irgsp1_rep	mRNA	41456194	41457059	.	-	.	ID=Os01t0943400-00;Name=Os01t0943400-00;Locus_id=Os01g0943400;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os01t0943400-00
Chr01	irgsp1_rep	CDS	41456947	41457059	.	-	0	Parent=Os01t0943400-00
Chr01	irgsp1_rep	CDS	41456194	41456353	.	-	1	Parent=Os01t0943400-00
Chr01	irgsp1_rep	mRNA	41464679	41467192	.	+	.	ID=Os01t0943700-01;Name=Os01t0943700-01;Locus_id=Os01g0943700;Note=Conserved hypothetical protein.;Transcript_evidence=AK066782 (DDBJ%2C Best hit);ORF_evidence=Q8H4Z9 (UniProt);NIAS_FLcDNA=J013078B08;TENOR=Os01t0943700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	41464679	41464679	.	+	.	Parent=Os01t0943700-01
Chr01	irgsp1_rep	CDS	41464680	41464847	.	+	0	Parent=Os01t0943700-01
Chr01	irgsp1_rep	three_prime_UTR	41464848	41467192	.	+	.	Parent=Os01t0943700-01
Chr01	irgsp1_rep	mRNA	41470283	41478058	.	+	.	ID=Os01t0943800-01;Name=Os01t0943800-01;Locus_id=Os01g0943800;Note=Similar to cDNA%2C clone: J100054L12%2C full insert sequence.;Transcript_evidence=AK059510 (DDBJ%2C Best hit);ORF_evidence=B7FA83 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=001-029-B04;TENOR=Os01t0943800-01
Chr01	irgsp1_rep	five_prime_UTR	41470283	41470466	.	+	.	Parent=Os01t0943800-01
Chr01	irgsp1_rep	CDS	41470467	41470485	.	+	0	Parent=Os01t0943800-01
Chr01	irgsp1_rep	CDS	41471527	41471687	.	+	2	Parent=Os01t0943800-01
Chr01	irgsp1_rep	CDS	41471766	41471840	.	+	0	Parent=Os01t0943800-01
Chr01	irgsp1_rep	CDS	41472090	41472584	.	+	0	Parent=Os01t0943800-01
Chr01	irgsp1_rep	CDS	41473248	41473586	.	+	0	Parent=Os01t0943800-01
Chr01	irgsp1_rep	CDS	41476128	41476219	.	+	0	Parent=Os01t0943800-01
Chr01	irgsp1_rep	CDS	41476308	41476351	.	+	1	Parent=Os01t0943800-01
Chr01	irgsp1_rep	CDS	41476429	41476484	.	+	2	Parent=Os01t0943800-01
Chr01	irgsp1_rep	CDS	41477297	41477590	.	+	0	Parent=Os01t0943800-01
Chr01	irgsp1_rep	three_prime_UTR	41477591	41477598	.	+	.	Parent=Os01t0943800-01
Chr01	irgsp1_rep	three_prime_UTR	41477771	41478058	.	+	.	Parent=Os01t0943800-01
Chr01	irgsp1_rep	mRNA	41470321	41478321	.	+	.	ID=Os01t0943800-02;Name=Os01t0943800-02;Locus_id=Os01g0943800;Note=Similar to cDNA clone:001-029-B04%2C full insert sequence.;Transcript_evidence=AK069731 (DDBJ%2C Best hit);ORF_evidence=B7E3R6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J023028M23;TENOR=Os01t0943800-02
Chr01	irgsp1_rep	five_prime_UTR	41470321	41470466	.	+	.	Parent=Os01t0943800-02
Chr01	irgsp1_rep	CDS	41470467	41470485	.	+	0	Parent=Os01t0943800-02
Chr01	irgsp1_rep	CDS	41471527	41471687	.	+	2	Parent=Os01t0943800-02
Chr01	irgsp1_rep	CDS	41471766	41471840	.	+	0	Parent=Os01t0943800-02
Chr01	irgsp1_rep	CDS	41472090	41472584	.	+	0	Parent=Os01t0943800-02
Chr01	irgsp1_rep	CDS	41473248	41473586	.	+	0	Parent=Os01t0943800-02
Chr01	irgsp1_rep	CDS	41476128	41476319	.	+	0	Parent=Os01t0943800-02
Chr01	irgsp1_rep	three_prime_UTR	41476320	41476351	.	+	.	Parent=Os01t0943800-02
Chr01	irgsp1_rep	three_prime_UTR	41476429	41476484	.	+	.	Parent=Os01t0943800-02
Chr01	irgsp1_rep	three_prime_UTR	41477297	41477598	.	+	.	Parent=Os01t0943800-02
Chr01	irgsp1_rep	three_prime_UTR	41477771	41478321	.	+	.	Parent=Os01t0943800-02
Chr01	irgsp1_rep	mRNA	41481289	41483400	.	+	.	ID=Os01t0943900-01;Name=Os01t0943900-01;Locus_id=Os01g0943900;Note=Hypothetical conserved gene.;Transcript_evidence=AK240931 (DDBJ%2C Best hit);ORF_evidence=Q94CS2 (UniProt);NIAS_FLcDNA=J065040K14;TENOR=Os01t0943900-01;KEGG=Os01t0943900-01
Chr01	irgsp1_rep	five_prime_UTR	41481289	41481526	.	+	.	Parent=Os01t0943900-01
Chr01	irgsp1_rep	CDS	41481527	41481658	.	+	0	Parent=Os01t0943900-01
Chr01	irgsp1_rep	CDS	41481732	41481934	.	+	0	Parent=Os01t0943900-01
Chr01	irgsp1_rep	CDS	41482127	41482178	.	+	1	Parent=Os01t0943900-01
Chr01	irgsp1_rep	three_prime_UTR	41482179	41482192	.	+	.	Parent=Os01t0943900-01
Chr01	irgsp1_rep	three_prime_UTR	41483014	41483400	.	+	.	Parent=Os01t0943900-01
Chr01	irgsp1_rep	mRNA	41485349	41486784	.	-	.	ID=Os01t0943950-00;Name=Os01t0943950-00;Locus_id=Os01g0943950;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=XP_002885094.1 (RefSeq);TENOR=Os01t0943950-00;KEGG=Os01t0943950-00
Chr01	irgsp1_rep	CDS	41486709	41486784	.	-	0	Parent=Os01t0943950-00
Chr01	irgsp1_rep	CDS	41485645	41485820	.	-	2	Parent=Os01t0943950-00
Chr01	irgsp1_rep	CDS	41485349	41485555	.	-	0	Parent=Os01t0943950-00
Chr01	irgsp1_rep	mRNA	41491608	41494450	.	-	.	ID=Os01t0944000-01;Name=Os01t0944000-01;Locus_id=Os01g0944000;Note=Conserved hypothetical protein.;Transcript_evidence=AK105567 (DDBJ%2C Best hit);ORF_evidence=Q94CR7 (UniProt);NIAS_FLcDNA=001-128-C09;Expression=AK105567;TENOR=Os01t0944000-01;KEGG=Os01t0944000-01
Chr01	irgsp1_rep	five_prime_UTR	41493887	41494450	.	-	.	Parent=Os01t0944000-01
Chr01	irgsp1_rep	CDS	41493653	41493886	.	-	0	Parent=Os01t0944000-01
Chr01	irgsp1_rep	CDS	41493483	41493586	.	-	0	Parent=Os01t0944000-01
Chr01	irgsp1_rep	CDS	41493338	41493368	.	-	1	Parent=Os01t0944000-01
Chr01	irgsp1_rep	three_prime_UTR	41493285	41493337	.	-	.	Parent=Os01t0944000-01
Chr01	irgsp1_rep	three_prime_UTR	41492873	41492996	.	-	.	Parent=Os01t0944000-01
Chr01	irgsp1_rep	three_prime_UTR	41492615	41492746	.	-	.	Parent=Os01t0944000-01
Chr01	irgsp1_rep	three_prime_UTR	41491608	41492510	.	-	.	Parent=Os01t0944000-01
Chr01	irgsp1_rep	mRNA	41487503	41494450	.	-	.	ID=Os01t0944000-02;Name=Os01t0944000-02;Locus_id=Os01g0944000;Note=Hypothetical conserved gene.;Transcript_evidence=AK288087 (DDBJ%2C Best hit);ORF_evidence=NP_001045368.1 (RefSeq);NIAS_FLcDNA=J075178L19;TENOR=Os01t0944000-02;KEGG=Os01t0944000-02
Chr01	irgsp1_rep	five_prime_UTR	41493887	41494450	.	-	.	Parent=Os01t0944000-02
Chr01	irgsp1_rep	CDS	41493644	41493886	.	-	0	Parent=Os01t0944000-02
Chr01	irgsp1_rep	three_prime_UTR	41493483	41493643	.	-	.	Parent=Os01t0944000-02
Chr01	irgsp1_rep	three_prime_UTR	41492873	41493368	.	-	.	Parent=Os01t0944000-02
Chr01	irgsp1_rep	three_prime_UTR	41492615	41492746	.	-	.	Parent=Os01t0944000-02
Chr01	irgsp1_rep	three_prime_UTR	41491732	41492510	.	-	.	Parent=Os01t0944000-02
Chr01	irgsp1_rep	three_prime_UTR	41488411	41490859	.	-	.	Parent=Os01t0944000-02
Chr01	irgsp1_rep	three_prime_UTR	41487503	41488027	.	-	.	Parent=Os01t0944000-02
Chr01	irgsp1_rep	mRNA	41486856	41494443	.	-	.	ID=Os01t0944000-03;Name=Os01t0944000-03;Locus_id=Os01g0944000;Note=Conserved hypothetical protein.;Transcript_evidence=AK120633 (DDBJ%2C Best hit);ORF_evidence=Q94CR7 (UniProt);NIAS_FLcDNA=J013153I18;Expression=AK120633;TENOR=Os01t0944000-03;KEGG=Os01t0944000-03
Chr01	irgsp1_rep	five_prime_UTR	41493887	41494443	.	-	.	Parent=Os01t0944000-03
Chr01	irgsp1_rep	CDS	41493653	41493886	.	-	0	Parent=Os01t0944000-03
Chr01	irgsp1_rep	CDS	41493483	41493586	.	-	0	Parent=Os01t0944000-03
Chr01	irgsp1_rep	CDS	41493338	41493368	.	-	1	Parent=Os01t0944000-03
Chr01	irgsp1_rep	three_prime_UTR	41493285	41493337	.	-	.	Parent=Os01t0944000-03
Chr01	irgsp1_rep	three_prime_UTR	41492873	41492996	.	-	.	Parent=Os01t0944000-03
Chr01	irgsp1_rep	three_prime_UTR	41492615	41492746	.	-	.	Parent=Os01t0944000-03
Chr01	irgsp1_rep	three_prime_UTR	41492408	41492510	.	-	.	Parent=Os01t0944000-03
Chr01	irgsp1_rep	three_prime_UTR	41491845	41492084	.	-	.	Parent=Os01t0944000-03
Chr01	irgsp1_rep	three_prime_UTR	41491732	41491776	.	-	.	Parent=Os01t0944000-03
Chr01	irgsp1_rep	three_prime_UTR	41488411	41490859	.	-	.	Parent=Os01t0944000-03
Chr01	irgsp1_rep	three_prime_UTR	41486856	41488027	.	-	.	Parent=Os01t0944000-03
Chr01	irgsp1_rep	mRNA	41495711	41504742	.	+	.	ID=Os01t0944100-01;Name=Os01t0944100-01;Locus_id=Os01g0944100;Note=Conserved hypothetical protein.;Transcript_evidence=AK287490 (DDBJ%2C Best hit);ORF_evidence=NP_001172737.1 (RefSeq);NIAS_FLcDNA=J043030D14;Oryzabase=20450;TENOR=Os01t0944100-01;KEGG=Os01t0944100-01
Chr01	irgsp1_rep	five_prime_UTR	41495711	41495822	.	+	.	Parent=Os01t0944100-01
Chr01	irgsp1_rep	CDS	41495823	41496092	.	+	0	Parent=Os01t0944100-01
Chr01	irgsp1_rep	three_prime_UTR	41496093	41496148	.	+	.	Parent=Os01t0944100-01
Chr01	irgsp1_rep	three_prime_UTR	41496932	41497016	.	+	.	Parent=Os01t0944100-01
Chr01	irgsp1_rep	three_prime_UTR	41500467	41500529	.	+	.	Parent=Os01t0944100-01
Chr01	irgsp1_rep	three_prime_UTR	41501241	41501384	.	+	.	Parent=Os01t0944100-01
Chr01	irgsp1_rep	three_prime_UTR	41502000	41502053	.	+	.	Parent=Os01t0944100-01
Chr01	irgsp1_rep	three_prime_UTR	41502351	41504742	.	+	.	Parent=Os01t0944100-01
Chr01	irgsp1_rep	mRNA	41495711	41498529	.	+	.	ID=Os01t0944100-02;Name=Os01t0944100-02;Locus_id=Os01g0944100;Note=Hypothetical protein.;Transcript_evidence=AK103482 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033130I02;Oryzabase=20450;Expression=AK103482;TENOR=Os01t0944100-02;KEGG=Os01t0944100-02
Chr01	irgsp1_rep	five_prime_UTR	41495711	41495822	.	+	.	Parent=Os01t0944100-02
Chr01	irgsp1_rep	CDS	41495823	41496092	.	+	0	Parent=Os01t0944100-02
Chr01	irgsp1_rep	three_prime_UTR	41496093	41496148	.	+	.	Parent=Os01t0944100-02
Chr01	irgsp1_rep	three_prime_UTR	41498361	41498529	.	+	.	Parent=Os01t0944100-02
Chr01	irgsp1_rep	mRNA	41495712	41498172	.	+	.	ID=Os01t0944100-03;Name=Os01t0944100-03;Locus_id=Os01g0944100;Note=Conserved hypothetical protein.;Transcript_evidence=AK103580 (DDBJ%2C Best hit);ORF_evidence=NP_001173817.1 (RefSeq);NIAS_FLcDNA=J033133A03;Oryzabase=20450;TENOR=Os01t0944100-03
Chr01	irgsp1_rep	five_prime_UTR	41495712	41495920	.	+	.	Parent=Os01t0944100-03
Chr01	irgsp1_rep	CDS	41495921	41496145	.	+	0	Parent=Os01t0944100-03
Chr01	irgsp1_rep	three_prime_UTR	41496146	41496148	.	+	.	Parent=Os01t0944100-03
Chr01	irgsp1_rep	three_prime_UTR	41497386	41498172	.	+	.	Parent=Os01t0944100-03
Chr01	irgsp1_rep	mRNA	41510192	41519672	.	+	.	ID=Os01t0944200-01;Name=Os01t0944200-01;Locus_id=Os01g0944200;Note=Ribonuclease H-like domain containing protein.;Transcript_evidence=AK067852 (DDBJ%2C Best hit);ORF_evidence=B9EWE5 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J013122B13;TENOR=Os01t0944200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	41510192	41510450	.	+	.	Parent=Os01t0944200-01
Chr01	irgsp1_rep	five_prime_UTR	41511106	41511173	.	+	.	Parent=Os01t0944200-01
Chr01	irgsp1_rep	five_prime_UTR	41512824	41512999	.	+	.	Parent=Os01t0944200-01
Chr01	irgsp1_rep	CDS	41513000	41513012	.	+	0	Parent=Os01t0944200-01
Chr01	irgsp1_rep	CDS	41517025	41517984	.	+	2	Parent=Os01t0944200-01
Chr01	irgsp1_rep	CDS	41518723	41519196	.	+	2	Parent=Os01t0944200-01
Chr01	irgsp1_rep	CDS	41519283	41519377	.	+	2	Parent=Os01t0944200-01
Chr01	irgsp1_rep	three_prime_UTR	41519378	41519672	.	+	.	Parent=Os01t0944200-01
Chr01	irgsp1_rep	mRNA	41525702	41526401	.	+	.	ID=Os01t0944500-00;Name=Os01t0944500-00;Locus_id=Os01g0944500;Oryzabase Gene Name Synonym(s)=PR2/Beta-1%2C 3-glucanase;Note=Glycoside hydrolase%2C family 17 domain containing protein.;Transcript_evidence=DQ244526 (DDBJ);ORF_evidence=GeneMark;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);Oryzabase=19076;TENOR=Os01t0944500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	41525702	41526401	.	+	0	Parent=Os01t0944500-00
Chr01	irgsp1_rep	mRNA	41533329	41535615	.	-	.	ID=Os01t0944700-01;Name=Os01t0944700-01;Locus_id=Os01g0944700;CGSNL Gene Symbol=GNS4;CGSNL Gene Name=BETA-1%2C3-GLUCANASE 4;Oryzabase Gene Symbol Synonym(s)=OsPR2%2C PR2%2C Gns4%2C OsGns4%2C OsGLN2;Oryzabase Gene Name Synonym(s)=beta-1%2C 3-glucanase%2C beta-1%2C 3-glucanase 4%2C endo-1%2C 3-beta-glucanase%2C Pathogenesis related gene 2;Note=Similar to Beta-1%2C3-glucanase precursor.;Transcript_evidence=AK070056 (DDBJ%2C Best hit);ORF_evidence=Q8W4V0 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J023041A20;Oryzabase=12544;Expression=AK070056;TENOR=Os01t0944700-01;KEGG=Os01t0944700-01
Chr01	irgsp1_rep	five_prime_UTR	41535561	41535615	.	-	.	Parent=Os01t0944700-01
Chr01	irgsp1_rep	CDS	41535485	41535560	.	-	0	Parent=Os01t0944700-01
Chr01	irgsp1_rep	CDS	41533558	41534486	.	-	2	Parent=Os01t0944700-01
Chr01	irgsp1_rep	three_prime_UTR	41533329	41533557	.	-	.	Parent=Os01t0944700-01
Chr01	irgsp1_rep	mRNA	41536977	41537927	.	-	.	ID=Os01t0944800-00;Name=Os01t0944800-00;Locus_id=Os01g0944800;CGSNL Gene Symbol=GNS3;CGSNL Gene Name=BETA-1%2C3-GLUCANASE 3;Oryzabase Gene Symbol Synonym(s)=Gns3%2C OsGns3;Oryzabase Gene Name Synonym(s)=beta-1%2C 3-glucanase 3;Note=Similar to Beta-1%2C3-glucanase.;Transcript_evidence=Z93114 (DDBJ);ORF_evidence=Q9ZNZ2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);Oryzabase=13922;TENOR=Os01t0944800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	41536977	41537927	.	-	0	Parent=Os01t0944800-00
Chr01	irgsp1_rep	mRNA	41539758	41540817	.	-	.	ID=Os01t0944900-01;Name=Os01t0944900-01;Locus_id=Os01g0944900;CGSNL Gene Symbol=GNS2;CGSNL Gene Name=BETA-1%2C3-GLUCANASE 2;Oryzabase Gene Symbol Synonym(s)=Gns2%2C OsGns2;Oryzabase Gene Name Synonym(s)=beta-1%2C 3-glucanase 2;Note=Similar to Glucan endo-1%2C3-beta-D-glucosidase.;Transcript_evidence=AK058891 (DDBJ%2C Best hit);ORF_evidence=Q1EMA5 (UniProt);NIAS_FLcDNA=001-007-D11;Oryzabase=13921;TENOR=Os01t0944900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	41540106	41540817	.	-	.	Parent=Os01t0944900-01
Chr01	irgsp1_rep	CDS	41539947	41540105	.	-	0	Parent=Os01t0944900-01
Chr01	irgsp1_rep	three_prime_UTR	41539758	41539946	.	-	.	Parent=Os01t0944900-01
Chr01	irgsp1_rep	mRNA	41542086	41545870	.	-	.	ID=Os01t0945001-01;Name=Os01t0945001-01;Locus_id=Os01g0945001;Note=Similar to RECA3 (RECA HOMOLOG 3)%3B DNA binding / DNA-dependent ATPase.;Transcript_evidence=AK240968 (DDBJ%2C Best hit);ORF_evidence=B8A939 (UniProt);GO=Biological Process: DNA metabolic process (GO:0006259),Biological Process: DNA repair (GO:0006281),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: DNA binding (GO:0003677),Molecular Function: single-stranded DNA binding (GO:0003697),Molecular Function: ATP binding (GO:0005524),Molecular Function: DNA-dependent ATPase activity (GO:0008094),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),DNA recombination and repair protein RecA (IPR013765),DNA recombination/repair protein RecA%2C monomer-monomer interface (IPR020587),DNA recombination/repair protein RecA/RadB%2C ATP-binding domain (IPR020588),DNA recombination and repair protein RecA%2C C-terminal (IPR023400);NIAS_FLcDNA=J065046M23;TENOR=Os01t0945001-01;KEGG=Os01t0945001-01
Chr01	irgsp1_rep	five_prime_UTR	41545683	41545870	.	-	.	Parent=Os01t0945001-01
Chr01	irgsp1_rep	CDS	41545557	41545682	.	-	0	Parent=Os01t0945001-01
Chr01	irgsp1_rep	CDS	41544959	41545019	.	-	0	Parent=Os01t0945001-01
Chr01	irgsp1_rep	CDS	41544640	41544860	.	-	2	Parent=Os01t0945001-01
Chr01	irgsp1_rep	CDS	41543751	41543838	.	-	0	Parent=Os01t0945001-01
Chr01	irgsp1_rep	CDS	41543482	41543651	.	-	2	Parent=Os01t0945001-01
Chr01	irgsp1_rep	CDS	41543068	41543214	.	-	0	Parent=Os01t0945001-01
Chr01	irgsp1_rep	CDS	41542825	41542959	.	-	0	Parent=Os01t0945001-01
Chr01	irgsp1_rep	CDS	41542396	41542680	.	-	0	Parent=Os01t0945001-01
Chr01	irgsp1_rep	three_prime_UTR	41542086	41542395	.	-	.	Parent=Os01t0945001-01
Chr01	irgsp1_rep	mRNA	41549116	41550693	.	-	.	ID=Os01t0945100-00;Name=Os01t0945100-00;Locus_id=Os01g0945100;Oryzabase Gene Symbol Synonym(s)=OsBAT2;Oryzabase Gene Name Synonym(s)=bi-directional amino acid transporter 2;Note=Similar to amino acid transporter.;Transcript_evidence=BT042582 (DDBJ);ORF_evidence=XP_002311477.1 (RefSeq);GO=Biological Process: amino acid transmembrane transport (GO:0003333),Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: amino acid transmembrane transporter activity (GO:0015171);InterPro=Amino acid/polyamine transporter I (IPR002293),Amino acid permease domain (IPR004841);Oryzabase=18547;TENOR=Os01t0945100-00;KEGG=Os01t0945100-00
Chr01	irgsp1_rep	CDS	41550429	41550693	.	-	0	Parent=Os01t0945100-00
Chr01	irgsp1_rep	CDS	41550167	41550348	.	-	2	Parent=Os01t0945100-00
Chr01	irgsp1_rep	CDS	41549785	41550074	.	-	0	Parent=Os01t0945100-00
Chr01	irgsp1_rep	CDS	41549563	41549692	.	-	1	Parent=Os01t0945100-00
Chr01	irgsp1_rep	CDS	41549116	41549472	.	-	0	Parent=Os01t0945100-00
Chr01	irgsp1_rep	mRNA	41549126	41551347	.	+	.	ID=Os01t0945150-00;Name=Os01t0945150-00;Locus_id=Os01g0945150;Note=Hypothetical protein.;Transcript_evidence=tplb0051k23 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0945150-00
Chr01	irgsp1_rep	five_prime_UTR	41549126	41549410	.	+	.	Parent=Os01t0945150-00
Chr01	irgsp1_rep	CDS	41549411	41549472	.	+	0	Parent=Os01t0945150-00
Chr01	irgsp1_rep	CDS	41549563	41549682	.	+	1	Parent=Os01t0945150-00
Chr01	irgsp1_rep	CDS	41549772	41549919	.	+	1	Parent=Os01t0945150-00
Chr01	irgsp1_rep	three_prime_UTR	41549920	41550063	.	+	.	Parent=Os01t0945150-00
Chr01	irgsp1_rep	three_prime_UTR	41550156	41550350	.	+	.	Parent=Os01t0945150-00
Chr01	irgsp1_rep	three_prime_UTR	41550435	41550664	.	+	.	Parent=Os01t0945150-00
Chr01	irgsp1_rep	three_prime_UTR	41550861	41551125	.	+	.	Parent=Os01t0945150-00
Chr01	irgsp1_rep	three_prime_UTR	41551246	41551347	.	+	.	Parent=Os01t0945150-00
Chr01	irgsp1_rep	mRNA	41552037	41554528	.	-	.	ID=Os01t0945200-00;Name=Os01t0945200-00;Locus_id=Os01g0945200;Oryzabase Gene Symbol Synonym(s)=OsBAT3;Oryzabase Gene Name Synonym(s)=bi-directional amino acid transporter 3;Note=Similar to BAT1 (BIDIRECTIONAL AMINO ACID TRANSPORTER 1)%3B amino acid transmembrane transporter.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_565254.1 (RefSeq);GO=Biological Process: amino acid transmembrane transport (GO:0003333),Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: amino acid transmembrane transporter activity (GO:0015171);InterPro=Amino acid/polyamine transporter I (IPR002293),Amino acid permease domain (IPR004841);Oryzabase=18548;TENOR=Os01t0945200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	41554416	41554528	.	-	0	Parent=Os01t0945200-00
Chr01	irgsp1_rep	CDS	41554035	41554295	.	-	1	Parent=Os01t0945200-00
Chr01	irgsp1_rep	CDS	41553762	41553780	.	-	1	Parent=Os01t0945200-00
Chr01	irgsp1_rep	CDS	41553425	41553644	.	-	0	Parent=Os01t0945200-00
Chr01	irgsp1_rep	CDS	41553123	41553304	.	-	2	Parent=Os01t0945200-00
Chr01	irgsp1_rep	CDS	41552726	41553015	.	-	0	Parent=Os01t0945200-00
Chr01	irgsp1_rep	CDS	41552495	41552624	.	-	1	Parent=Os01t0945200-00
Chr01	irgsp1_rep	CDS	41552037	41552396	.	-	0	Parent=Os01t0945200-00
Chr01	irgsp1_rep	mRNA	41552065	41554578	.	+	.	ID=Os01t0945250-00;Name=Os01t0945250-00;Locus_id=Os01g0945250;Note=Hypothetical protein.;Transcript_evidence=tplb0051k23 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0945250-00
Chr01	irgsp1_rep	five_prime_UTR	41552065	41552090	.	+	.	Parent=Os01t0945250-00
Chr01	irgsp1_rep	CDS	41552091	41552396	.	+	0	Parent=Os01t0945250-00
Chr01	irgsp1_rep	CDS	41552495	41552623	.	+	0	Parent=Os01t0945250-00
Chr01	irgsp1_rep	CDS	41552725	41552730	.	+	0	Parent=Os01t0945250-00
Chr01	irgsp1_rep	three_prime_UTR	41552731	41553004	.	+	.	Parent=Os01t0945250-00
Chr01	irgsp1_rep	three_prime_UTR	41553112	41553301	.	+	.	Parent=Os01t0945250-00
Chr01	irgsp1_rep	three_prime_UTR	41553422	41553660	.	+	.	Parent=Os01t0945250-00
Chr01	irgsp1_rep	three_prime_UTR	41554033	41554297	.	+	.	Parent=Os01t0945250-00
Chr01	irgsp1_rep	three_prime_UTR	41554419	41554578	.	+	.	Parent=Os01t0945250-00
Chr01	irgsp1_rep	mRNA	41554884	41559339	.	-	.	ID=Os01t0945300-01;Name=Os01t0945300-01;Locus_id=Os01g0945300;Oryzabase Gene Symbol Synonym(s)=OsBAT4;Oryzabase Gene Name Synonym(s)=bi-directional amino acid transporter 4;Note=Amino acid/polyamine transporter I family protein.;Transcript_evidence=AK065371 (DDBJ%2C Best hit);ORF_evidence=NP_565254.1 (RefSeq);GO=Biological Process: amino acid transmembrane transport (GO:0003333),Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: amino acid transmembrane transporter activity (GO:0015171);InterPro=Amino acid/polyamine transporter I (IPR002293),Amino acid permease domain (IPR004841);NIAS_FLcDNA=J013023D09;Oryzabase=18549;Expression=AK065371;TENOR=Os01t0945300-01;KEGG=Os01t0945300-01
Chr01	irgsp1_rep	five_prime_UTR	41559226	41559339	.	-	.	Parent=Os01t0945300-01
Chr01	irgsp1_rep	CDS	41559107	41559225	.	-	0	Parent=Os01t0945300-01
Chr01	irgsp1_rep	CDS	41558745	41559005	.	-	1	Parent=Os01t0945300-01
Chr01	irgsp1_rep	CDS	41558447	41558465	.	-	1	Parent=Os01t0945300-01
Chr01	irgsp1_rep	CDS	41556479	41556698	.	-	0	Parent=Os01t0945300-01
Chr01	irgsp1_rep	CDS	41556202	41556383	.	-	2	Parent=Os01t0945300-01
Chr01	irgsp1_rep	CDS	41555821	41556110	.	-	0	Parent=Os01t0945300-01
Chr01	irgsp1_rep	CDS	41555590	41555719	.	-	1	Parent=Os01t0945300-01
Chr01	irgsp1_rep	CDS	41555146	41555502	.	-	0	Parent=Os01t0945300-01
Chr01	irgsp1_rep	three_prime_UTR	41554884	41555145	.	-	.	Parent=Os01t0945300-01
Chr01	irgsp1_rep	mRNA	41554997	41559267	.	-	.	ID=Os01t0945300-02;Name=Os01t0945300-02;Locus_id=Os01g0945300;Oryzabase Gene Symbol Synonym(s)=OsBAT4;Oryzabase Gene Name Synonym(s)=bi-directional amino acid transporter 4;Note=Amino acid/polyamine transporter I family protein.;Transcript_evidence=AK072189 (DDBJ%2C Best hit);ORF_evidence=NP_565254.1 (RefSeq);GO=Biological Process: amino acid transmembrane transport (GO:0003333),Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: amino acid transmembrane transporter activity (GO:0015171);InterPro=Amino acid/polyamine transporter I (IPR002293),Amino acid permease domain (IPR004841);NIAS_FLcDNA=J013146P21;Oryzabase=18549;Expression=AK072189;TENOR=Os01t0945300-02;KEGG=Os01t0945300-02
Chr01	irgsp1_rep	five_prime_UTR	41559226	41559267	.	-	.	Parent=Os01t0945300-02
Chr01	irgsp1_rep	CDS	41559107	41559225	.	-	0	Parent=Os01t0945300-02
Chr01	irgsp1_rep	CDS	41558745	41559005	.	-	1	Parent=Os01t0945300-02
Chr01	irgsp1_rep	CDS	41558447	41558465	.	-	1	Parent=Os01t0945300-02
Chr01	irgsp1_rep	CDS	41556479	41556698	.	-	0	Parent=Os01t0945300-02
Chr01	irgsp1_rep	CDS	41556202	41556383	.	-	2	Parent=Os01t0945300-02
Chr01	irgsp1_rep	CDS	41555821	41556110	.	-	0	Parent=Os01t0945300-02
Chr01	irgsp1_rep	CDS	41555590	41555719	.	-	1	Parent=Os01t0945300-02
Chr01	irgsp1_rep	CDS	41555146	41555502	.	-	0	Parent=Os01t0945300-02
Chr01	irgsp1_rep	three_prime_UTR	41554997	41555145	.	-	.	Parent=Os01t0945300-02
Chr01	irgsp1_rep	mRNA	41555174	41559225	.	+	.	ID=Os01t0945400-00;Name=Os01t0945400-00;Locus_id=Os01g0945400;Note=Hypothetical protein.;Transcript_evidence=tplb0051k23 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0945400-00
Chr01	irgsp1_rep	five_prime_UTR	41555174	41555504	.	+	.	Parent=Os01t0945400-00
Chr01	irgsp1_rep	five_prime_UTR	41555596	41555718	.	+	.	Parent=Os01t0945400-00
Chr01	irgsp1_rep	five_prime_UTR	41555820	41556110	.	+	.	Parent=Os01t0945400-00
Chr01	irgsp1_rep	five_prime_UTR	41556202	41556319	.	+	.	Parent=Os01t0945400-00
Chr01	irgsp1_rep	CDS	41556320	41556405	.	+	0	Parent=Os01t0945400-00
Chr01	irgsp1_rep	CDS	41556497	41556724	.	+	1	Parent=Os01t0945400-00
Chr01	irgsp1_rep	CDS	41558752	41558992	.	+	1	Parent=Os01t0945400-00
Chr01	irgsp1_rep	CDS	41559096	41559225	.	+	0	Parent=Os01t0945400-00
Chr01	irgsp1_rep	mRNA	41564014	41566629	.	-	.	ID=Os01t0945600-01;Name=Os01t0945600-01;Locus_id=Os01g0945600;Oryzabase Gene Symbol Synonym(s)=OsBAT5;Oryzabase Gene Name Synonym(s)=bi-directional amino acid transporter 5;Note=Similar to amino acid permease family protein.;Transcript_evidence=AK242715 (DDBJ%2C Best hit);ORF_evidence=NP_565254.1 (RefSeq);GO=Biological Process: amino acid transmembrane transport (GO:0003333),Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: amino acid transmembrane transporter activity (GO:0015171);InterPro=Amino acid/polyamine transporter I (IPR002293),Amino acid permease domain (IPR004841);NIAS_FLcDNA=J090042G11;Oryzabase=18550;TENOR=Os01t0945600-01;KEGG=Os01t0945600-01
Chr01	irgsp1_rep	five_prime_UTR	41566588	41566629	.	-	.	Parent=Os01t0945600-01
Chr01	irgsp1_rep	CDS	41566484	41566587	.	-	0	Parent=Os01t0945600-01
Chr01	irgsp1_rep	CDS	41566118	41566378	.	-	1	Parent=Os01t0945600-01
Chr01	irgsp1_rep	CDS	41565993	41566011	.	-	1	Parent=Os01t0945600-01
Chr01	irgsp1_rep	CDS	41565346	41565565	.	-	0	Parent=Os01t0945600-01
Chr01	irgsp1_rep	CDS	41565043	41565224	.	-	2	Parent=Os01t0945600-01
Chr01	irgsp1_rep	CDS	41564522	41564941	.	-	0	Parent=Os01t0945600-01
Chr01	irgsp1_rep	CDS	41564096	41564443	.	-	0	Parent=Os01t0945600-01
Chr01	irgsp1_rep	three_prime_UTR	41564014	41564095	.	-	.	Parent=Os01t0945600-01
Chr01	irgsp1_rep	mRNA	41570731	41573344	.	+	.	ID=Os01t0945650-00;Name=Os01t0945650-00;Locus_id=Os01g0945650;Note=Hypothetical protein.;Transcript_evidence=tplb0051k23 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0945650-00
Chr01	irgsp1_rep	five_prime_UTR	41570731	41571111	.	+	.	Parent=Os01t0945650-00
Chr01	irgsp1_rep	five_prime_UTR	41571213	41571615	.	+	.	Parent=Os01t0945650-00
Chr01	irgsp1_rep	five_prime_UTR	41571712	41571786	.	+	.	Parent=Os01t0945650-00
Chr01	irgsp1_rep	CDS	41571787	41571894	.	+	0	Parent=Os01t0945650-00
Chr01	irgsp1_rep	CDS	41571992	41572233	.	+	0	Parent=Os01t0945650-00
Chr01	irgsp1_rep	CDS	41572819	41572888	.	+	1	Parent=Os01t0945650-00
Chr01	irgsp1_rep	three_prime_UTR	41572889	41573073	.	+	.	Parent=Os01t0945650-00
Chr01	irgsp1_rep	three_prime_UTR	41573194	41573344	.	+	.	Parent=Os01t0945650-00
Chr01	irgsp1_rep	mRNA	41564097	41566712	.	+	.	ID=Os01t0945666-00;Name=Os01t0945666-00;Locus_id=Os01g0945666;Note=Hypothetical protein.;Transcript_evidence=tplb0051k23 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0945666-00
Chr01	irgsp1_rep	five_prime_UTR	41564097	41564140	.	+	.	Parent=Os01t0945666-00
Chr01	irgsp1_rep	CDS	41564141	41564443	.	+	0	Parent=Os01t0945666-00
Chr01	irgsp1_rep	CDS	41564522	41564878	.	+	0	Parent=Os01t0945666-00
Chr01	irgsp1_rep	three_prime_UTR	41564879	41564930	.	+	.	Parent=Os01t0945666-00
Chr01	irgsp1_rep	three_prime_UTR	41565034	41565235	.	+	.	Parent=Os01t0945666-00
Chr01	irgsp1_rep	three_prime_UTR	41565360	41565585	.	+	.	Parent=Os01t0945666-00
Chr01	irgsp1_rep	three_prime_UTR	41566121	41566365	.	+	.	Parent=Os01t0945666-00
Chr01	irgsp1_rep	three_prime_UTR	41566474	41566712	.	+	.	Parent=Os01t0945666-00
Chr01	irgsp1_rep	mRNA	41570750	41572049	.	-	.	ID=Os01t0945700-00;Name=Os01t0945700-00;Locus_id=Os01g0945700;Oryzabase Gene Symbol Synonym(s)=OsBAT6;Oryzabase Gene Name Synonym(s)=bi-directional amino acid transporter 6;Note=Similar to amino acid transporter.;Transcript_evidence=EU971869 (DDBJ);ORF_evidence=XP_002311477.1 (RefSeq);GO=Biological Process: amino acid transmembrane transport (GO:0003333),Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: amino acid transmembrane transporter activity (GO:0015171);InterPro=Amino acid/polyamine transporter I (IPR002293),Amino acid permease domain (IPR004841);Oryzabase=18551;TENOR=Os01t0945700-00;KEGG=Os01t0945700-00
Chr01	irgsp1_rep	CDS	41571207	41572049	.	-	0	Parent=Os01t0945700-00
Chr01	irgsp1_rep	CDS	41570750	41571109	.	-	0	Parent=Os01t0945700-00
Chr01	irgsp1_rep	mRNA	41573942	41578783	.	-	.	ID=Os01t0945800-01;Name=Os01t0945800-01;Locus_id=Os01g0945800;Oryzabase Gene Symbol Synonym(s)=HNR27C%2C HNR;Oryzabase Gene Name Synonym(s)=Heterogeneous nuclear ribonucleoprotein 27C;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK072850 (DDBJ%2C Best hit),AK060921 (DDBJ%2C Best hit);ORF_evidence=B9EWF4 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023143E01,001-035-H04;Oryzabase=21965;Expression=AK072850;TENOR=Os01t0945800-01;KEGG=Os01t0945800-01
Chr01	irgsp1_rep	five_prime_UTR	41578633	41578783	.	-	.	Parent=Os01t0945800-01
Chr01	irgsp1_rep	five_prime_UTR	41577668	41577781	.	-	.	Parent=Os01t0945800-01
Chr01	irgsp1_rep	CDS	41577650	41577667	.	-	0	Parent=Os01t0945800-01
Chr01	irgsp1_rep	CDS	41577458	41577547	.	-	0	Parent=Os01t0945800-01
Chr01	irgsp1_rep	CDS	41577001	41577066	.	-	0	Parent=Os01t0945800-01
Chr01	irgsp1_rep	CDS	41576637	41576702	.	-	0	Parent=Os01t0945800-01
Chr01	irgsp1_rep	CDS	41576447	41576535	.	-	0	Parent=Os01t0945800-01
Chr01	irgsp1_rep	CDS	41576301	41576346	.	-	1	Parent=Os01t0945800-01
Chr01	irgsp1_rep	CDS	41575774	41575828	.	-	0	Parent=Os01t0945800-01
Chr01	irgsp1_rep	CDS	41575465	41575541	.	-	2	Parent=Os01t0945800-01
Chr01	irgsp1_rep	CDS	41575187	41575328	.	-	0	Parent=Os01t0945800-01
Chr01	irgsp1_rep	CDS	41574958	41575097	.	-	2	Parent=Os01t0945800-01
Chr01	irgsp1_rep	CDS	41574782	41574886	.	-	0	Parent=Os01t0945800-01
Chr01	irgsp1_rep	CDS	41574531	41574659	.	-	0	Parent=Os01t0945800-01
Chr01	irgsp1_rep	CDS	41574283	41574351	.	-	0	Parent=Os01t0945800-01
Chr01	irgsp1_rep	three_prime_UTR	41573942	41574282	.	-	.	Parent=Os01t0945800-01
Chr01	irgsp1_rep	mRNA	41582224	41583931	.	+	.	ID=Os01t0946100-02;Name=Os01t0946100-02;Locus_id=Os01g0946100;Oryzabase Gene Symbol Synonym(s)=OsWD40-31;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK072248 (DDBJ%2C Best hit),AK099261 (DDBJ%2C Best hit);ORF_evidence=NP_190761.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J023003G17,J023003E24;Oryzabase=10712;Expression=AK072248;TENOR=Os01t0946100-02;KEGG=Os01t0946100-02
Chr01	irgsp1_rep	five_prime_UTR	41582224	41582389	.	+	.	Parent=Os01t0946100-02
Chr01	irgsp1_rep	CDS	41582390	41583685	.	+	0	Parent=Os01t0946100-02
Chr01	irgsp1_rep	three_prime_UTR	41583686	41583931	.	+	.	Parent=Os01t0946100-02
Chr01	irgsp1_rep	mRNA	41584367	41585285	.	+	.	ID=Os01t0946200-01;Name=Os01t0946200-01;Locus_id=Os01g0946200;CGSNL Gene Symbol=NAC38;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 38;Oryzabase Gene Symbol Synonym(s)=ONAC038%2C ONAC38;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 038%2C NAC domain-containing protein 38;Note=No apical meristem (NAM) protein domain containing protein.;Transcript_evidence=AK071060 (DDBJ%2C Best hit);ORF_evidence=A2WYZ6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=J023080K20;Oryzabase=15832;Expression=AK071060;TENOR=Os01t0946200-01;KEGG=Os01t0946200-01
Chr01	irgsp1_rep	five_prime_UTR	41584367	41584464	.	+	.	Parent=Os01t0946200-01
Chr01	irgsp1_rep	CDS	41584465	41585079	.	+	0	Parent=Os01t0946200-01
Chr01	irgsp1_rep	three_prime_UTR	41585080	41585285	.	+	.	Parent=Os01t0946200-01
Chr01	irgsp1_rep	mRNA	41586509	41587063	.	+	.	ID=Os01t0946300-00;Name=Os01t0946300-00;Locus_id=Os01g0946300;Oryzabase Gene Symbol Synonym(s)=OsSTA44;Note=Similar to Lecithin:cholesterol acyltransferase family protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10A29 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: O-acyltransferase activity (GO:0008374);InterPro=Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase (IPR003386);Oryzabase=19350;TENOR=Os01t0946300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	41586509	41587063	.	+	0	Parent=Os01t0946300-00
Chr01	irgsp1_rep	mRNA	41592216	41594985	.	-	.	ID=Os01t0946500-01;Name=Os01t0946500-01;Locus_id=Os01g0946500;Note=Similar to Glucan endo-1%2C3-beta-glucosidase GV (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase GV) ((1->3)-beta-glucanase isoenzyme GV) (Beta-1%2C3- endoglucanase GV).;Transcript_evidence=AK318559 (DDBJ%2C Best hit);ORF_evidence=Q8W264 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J075168P06;TENOR=Os01t0946500-01;KEGG=Os01t0946500-01 (EC:3.2.1.39)
Chr01	irgsp1_rep	five_prime_UTR	41594882	41594985	.	-	.	Parent=Os01t0946500-01
Chr01	irgsp1_rep	CDS	41594875	41594881	.	-	0	Parent=Os01t0946500-01
Chr01	irgsp1_rep	CDS	41592366	41593315	.	-	2	Parent=Os01t0946500-01
Chr01	irgsp1_rep	three_prime_UTR	41592216	41592365	.	-	.	Parent=Os01t0946500-01
Chr01	irgsp1_rep	mRNA	41596822	41597034	.	-	.	ID=Os01t0946550-00;Name=Os01t0946550-00;Locus_id=Os01g0946550;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001172741.1 (RefSeq);TENOR=Os01t0946550-00;KEGG=Os01t0946550-00
Chr01	irgsp1_rep	CDS	41596822	41597034	.	-	0	Parent=Os01t0946550-00
Chr01	irgsp1_rep	mRNA	41597358	41598689	.	-	.	ID=Os01t0946600-01;Name=Os01t0946600-01;Locus_id=Os01g0946600;Oryzabase Gene Symbol Synonym(s)=OsPR2;Note=Conserved hypothetical protein.;Transcript_evidence=AK071109 (DDBJ%2C Best hit),AK104139 (DDBJ%2C Best hit),AK104321 (DDBJ%2C Best hit),AK119902 (DDBJ%2C Best hit);ORF_evidence=A3A1F7 (UniProt);NIAS_FLcDNA=J023078D09,006-205-C05,001-026-C11,002-181-D04;Oryzabase=23758;TENOR=Os01t0946600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	41598581	41598689	.	-	.	Parent=Os01t0946600-01
Chr01	irgsp1_rep	five_prime_UTR	41598156	41598387	.	-	.	Parent=Os01t0946600-01
Chr01	irgsp1_rep	CDS	41597511	41598155	.	-	0	Parent=Os01t0946600-01
Chr01	irgsp1_rep	three_prime_UTR	41597358	41597510	.	-	.	Parent=Os01t0946600-01
Chr01	irgsp1_rep	mRNA	41603305	41604652	.	+	.	ID=Os01t0946700-01;Name=Os01t0946700-01;Locus_id=Os01g0946700;Oryzabase Gene Symbol Synonym(s)=OsGLN1;Oryzabase Gene Name Synonym(s)=endo-1%2C 3-beta-glucanase 1;Note=Similar to Glucan endo-1%2C3-beta-glucosidase GV (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase GV) ((1->3)-beta-glucanase isoenzyme GV) (Beta-1%2C3- endoglucanase GV).;Transcript_evidence=AK069096 (DDBJ%2C Best hit);ORF_evidence=Q8W264 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J023004E16;Oryzabase=14410;Expression=AK069096;TENOR=Os01t0946700-01;KEGG=Os01t0946700-01 (EC:3.2.1.39)
Chr01	irgsp1_rep	five_prime_UTR	41603305	41603369	.	+	.	Parent=Os01t0946700-01
Chr01	irgsp1_rep	CDS	41603370	41603376	.	+	0	Parent=Os01t0946700-01
Chr01	irgsp1_rep	CDS	41603555	41604504	.	+	2	Parent=Os01t0946700-01
Chr01	irgsp1_rep	three_prime_UTR	41604505	41604652	.	+	.	Parent=Os01t0946700-01
Chr01	irgsp1_rep	mRNA	41614160	41628483	.	+	.	ID=Os01t0946800-00;Name=Os01t0946800-00;Locus_id=Os01g0946800;Note=Similar to OSIGBa0115K01-H0319F09.21 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01HN1 (UniProt);TENOR=Os01t0946800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	41614160	41614192	.	+	0	Parent=Os01t0946800-00
Chr01	irgsp1_rep	CDS	41614824	41614922	.	+	0	Parent=Os01t0946800-00
Chr01	irgsp1_rep	CDS	41615011	41615073	.	+	0	Parent=Os01t0946800-00
Chr01	irgsp1_rep	CDS	41616617	41617144	.	+	0	Parent=Os01t0946800-00
Chr01	irgsp1_rep	CDS	41617239	41617412	.	+	0	Parent=Os01t0946800-00
Chr01	irgsp1_rep	CDS	41617523	41617841	.	+	0	Parent=Os01t0946800-00
Chr01	irgsp1_rep	CDS	41617930	41618006	.	+	2	Parent=Os01t0946800-00
Chr01	irgsp1_rep	CDS	41618079	41618148	.	+	0	Parent=Os01t0946800-00
Chr01	irgsp1_rep	CDS	41618386	41618600	.	+	2	Parent=Os01t0946800-00
Chr01	irgsp1_rep	CDS	41618723	41618848	.	+	0	Parent=Os01t0946800-00
Chr01	irgsp1_rep	CDS	41618936	41619231	.	+	0	Parent=Os01t0946800-00
Chr01	irgsp1_rep	CDS	41619319	41619490	.	+	1	Parent=Os01t0946800-00
Chr01	irgsp1_rep	CDS	41619587	41619685	.	+	0	Parent=Os01t0946800-00
Chr01	irgsp1_rep	CDS	41619980	41620080	.	+	0	Parent=Os01t0946800-00
Chr01	irgsp1_rep	CDS	41628444	41628483	.	+	1	Parent=Os01t0946800-00
Chr01	irgsp1_rep	mRNA	41604811	41611736	.	-	.	ID=Os01t0946850-00;Name=Os01t0946850-00;Locus_id=Os01g0946850;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0019d14 (Wheat FLcDNA);ORF_evidence=Q5JMV7 (UniProt);TENOR=Os01t0946850-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	41610867	41611736	.	-	0	Parent=Os01t0946850-00
Chr01	irgsp1_rep	CDS	41610623	41610778	.	-	0	Parent=Os01t0946850-00
Chr01	irgsp1_rep	CDS	41604811	41605026	.	-	0	Parent=Os01t0946850-00
Chr01	irgsp1_rep	mRNA	41629302	41631696	.	+	.	ID=Os01t0947000-01;Name=Os01t0947000-01;Locus_id=Os01g0947000;Oryzabase Gene Name Synonym(s)=endo-1%2C 3-beta-glucanase;Note=Similar to Beta-1%2C3-glucanase precursor.;Transcript_evidence=AK063953 (DDBJ%2C Best hit),AK102628 (DDBJ%2C Best hit);ORF_evidence=Q8W264 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-123-F10,J033099K11;Oryzabase=19104;TENOR=Os01t0947000-01
Chr01	irgsp1_rep	five_prime_UTR	41629302	41629402	.	+	.	Parent=Os01t0947000-01
Chr01	irgsp1_rep	CDS	41629403	41629409	.	+	0	Parent=Os01t0947000-01
Chr01	irgsp1_rep	CDS	41629533	41630468	.	+	2	Parent=Os01t0947000-01
Chr01	irgsp1_rep	CDS	41630584	41631539	.	+	2	Parent=Os01t0947000-01
Chr01	irgsp1_rep	three_prime_UTR	41631540	41631696	.	+	.	Parent=Os01t0947000-01
Chr01	irgsp1_rep	mRNA	41657953	41658477	.	+	.	ID=Os01t0947500-00;Name=Os01t0947500-00;Locus_id=Os01g0947500;Note=Conserved hypothetical protein.;Transcript_evidence=Z93114 (DDBJ);ORF_evidence=F2DK87 (UniProt);TENOR=Os01t0947500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	41657953	41657962	.	+	.	Parent=Os01t0947500-00
Chr01	irgsp1_rep	CDS	41657963	41658247	.	+	0	Parent=Os01t0947500-00
Chr01	irgsp1_rep	three_prime_UTR	41658248	41658477	.	+	.	Parent=Os01t0947500-00
Chr01	irgsp1_rep	mRNA	41677883	41681803	.	-	.	ID=Os01t0947700-01;Name=Os01t0947700-01;Locus_id=Os01g0947700;RAP-DB Gene Symbol Synonym(s)=Osg1;RAP-DB Gene Name Synonym(s)=glucanase 1;Oryzabase Gene Symbol Synonym(s)=Osg1%2C g1;Oryzabase Gene Name Synonym(s)=glucanase 1;Note=&beta%3B-1%2C3-glucanase%2C Callose degradation%2C Pollen development;Transcript_evidence=AK066757;ORF_evidence=Q0JG25;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Leucine-rich repeat domain superfamily (IPR032675),Glycoside hydrolase superfamily (IPR017853),Glycoside hydrolase family 17 (IPR000490);NIAS_FLcDNA=J013074A18;Manual Curation=September 29%2C 2020;Literature_PMID=21046148,12162569;Oryzabase=13920;TENOR=Os01t0947700-01
Chr01	irgsp1_rep	five_prime_UTR	41680613	41681803	.	-	.	Parent=Os01t0947700-01
Chr01	irgsp1_rep	CDS	41679655	41680612	.	-	0	Parent=Os01t0947700-01
Chr01	irgsp1_rep	CDS	41678335	41679275	.	-	2	Parent=Os01t0947700-01
Chr01	irgsp1_rep	three_prime_UTR	41677883	41678334	.	-	.	Parent=Os01t0947700-01
Chr01	irgsp1_rep	mRNA	41679818	41681392	.	+	.	ID=Os01t0947767-00;Name=Os01t0947767-00;Locus_id=Os01g0947767;Note=Hypothetical gene.;Transcript_evidence=CT828816 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os01t0947767-00;KEGG=Os01t0947767-00
Chr01	irgsp1_rep	five_prime_UTR	41679818	41679905	.	+	.	Parent=Os01t0947767-00
Chr01	irgsp1_rep	CDS	41679906	41680517	.	+	0	Parent=Os01t0947767-00
Chr01	irgsp1_rep	CDS	41680580	41680627	.	+	0	Parent=Os01t0947767-00
Chr01	irgsp1_rep	three_prime_UTR	41680628	41681392	.	+	.	Parent=Os01t0947767-00
Chr01	irgsp1_rep	mRNA	41689146	41689565	.	+	.	ID=Os01t0947800-00;Name=Os01t0947800-00;Locus_id=Os01g0947800;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8B7D1 (UniProt);TENOR=Os01t0947800-00
Chr01	irgsp1_rep	CDS	41689146	41689565	.	+	0	Parent=Os01t0947800-00
Chr01	irgsp1_rep	mRNA	41689620	41690158	.	-	.	ID=Os01t0947833-00;Name=Os01t0947833-00;Locus_id=Os01g0947833;Note=Conserved hypothetical protein.;Transcript_evidence=AK062969 (DDBJ%2C Secondary hit);ORF_evidence=NP_001045425.1 (RefSeq);TENOR=Os01t0947833-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	41690158	41690158	.	-	.	Parent=Os01t0947833-00
Chr01	irgsp1_rep	CDS	41689945	41690157	.	-	0	Parent=Os01t0947833-00
Chr01	irgsp1_rep	three_prime_UTR	41689804	41689944	.	-	.	Parent=Os01t0947833-00
Chr01	irgsp1_rep	three_prime_UTR	41689620	41689791	.	-	.	Parent=Os01t0947833-00
Chr01	irgsp1_rep	mRNA	41691190	41698689	.	+	.	ID=Os01t0948100-01;Name=Os01t0948100-01;Locus_id=Os01g0948100;Oryzabase Gene Symbol Synonym(s)=OsMUS81%2C OsMUS81alpha%2C OsMUS81beta%2C ERCC4;Note=Restriction endonuclease%2C type II-like%2C core domain containing protein.;Transcript_evidence=AK111411 (DDBJ%2C Best hit);ORF_evidence=B9EWF8 (UniProt);GO=Biological Process: DNA metabolic process (GO:0006259),Biological Process: DNA repair (GO:0006281),Molecular Function: DNA binding (GO:0003677),Molecular Function: nuclease activity (GO:0004518);InterPro=Helix-hairpin-helix DNA-binding motif%2C class 1 (IPR003583),ERCC4 domain (IPR006166),Restriction endonuclease%2C type II-like (IPR011335),DNA repair nuclease%2C XPF-type/Helicase (IPR020819);NIAS_FLcDNA=002-182-F04;Oryzabase=11613;Expression=AK111411;TENOR=Os01t0948100-01;KEGG=Os01t0948100-01 (EC:3.1.22.-)
Chr01	irgsp1_rep	five_prime_UTR	41691190	41691310	.	+	.	Parent=Os01t0948100-01
Chr01	irgsp1_rep	CDS	41691311	41691513	.	+	0	Parent=Os01t0948100-01
Chr01	irgsp1_rep	CDS	41692027	41692124	.	+	1	Parent=Os01t0948100-01
Chr01	irgsp1_rep	CDS	41692255	41692333	.	+	2	Parent=Os01t0948100-01
Chr01	irgsp1_rep	CDS	41692486	41692572	.	+	1	Parent=Os01t0948100-01
Chr01	irgsp1_rep	CDS	41692662	41692787	.	+	1	Parent=Os01t0948100-01
Chr01	irgsp1_rep	CDS	41693890	41694181	.	+	1	Parent=Os01t0948100-01
Chr01	irgsp1_rep	CDS	41694619	41694694	.	+	0	Parent=Os01t0948100-01
Chr01	irgsp1_rep	CDS	41694775	41694831	.	+	2	Parent=Os01t0948100-01
Chr01	irgsp1_rep	CDS	41694936	41695033	.	+	2	Parent=Os01t0948100-01
Chr01	irgsp1_rep	CDS	41695164	41695306	.	+	0	Parent=Os01t0948100-01
Chr01	irgsp1_rep	CDS	41696163	41696220	.	+	1	Parent=Os01t0948100-01
Chr01	irgsp1_rep	CDS	41696696	41696854	.	+	0	Parent=Os01t0948100-01
Chr01	irgsp1_rep	CDS	41697389	41697468	.	+	0	Parent=Os01t0948100-01
Chr01	irgsp1_rep	CDS	41697619	41697853	.	+	1	Parent=Os01t0948100-01
Chr01	irgsp1_rep	CDS	41697958	41698044	.	+	0	Parent=Os01t0948100-01
Chr01	irgsp1_rep	CDS	41698248	41698352	.	+	0	Parent=Os01t0948100-01
Chr01	irgsp1_rep	three_prime_UTR	41698353	41698689	.	+	.	Parent=Os01t0948100-01
Chr01	irgsp1_rep	mRNA	41698428	41699108	.	-	.	ID=Os01t0948133-01;Name=Os01t0948133-01;Locus_id=Os01g0948133;Note=Non-protein coding transcript.;Transcript_evidence=AK289153 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090099O12;TENOR=Os01t0948133-01
Chr01	irgsp1_rep	exon	41698428	41699108	.	-	.	Parent=Os01t0948133-01
Chr01	irgsp1_rep	mRNA	41712445	41714110	.	+	.	ID=Os01t0948200-00;Name=Os01t0948200-00;Locus_id=Os01g0948200;CGSNL Gene Symbol=GRAS6;CGSNL Gene Name=GRAS PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsGRAS-6%2C OsGRAS6%2C GRAS-6;Oryzabase Gene Name Synonym(s)=GRAS protein 6;Note=Similar to GRAS family transcription factor containing protein.;Transcript_evidence=FP097535 (DDBJ);ORF_evidence=NP_001147776.1 (RefSeq);InterPro=Transcription factor GRAS (IPR005202);Oryzabase=22782;TENOR=Os01t0948200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	41712445	41712482	.	+	.	Parent=Os01t0948200-00
Chr01	irgsp1_rep	CDS	41712483	41713811	.	+	0	Parent=Os01t0948200-00
Chr01	irgsp1_rep	three_prime_UTR	41713812	41713988	.	+	.	Parent=Os01t0948200-00
Chr01	irgsp1_rep	three_prime_UTR	41714044	41714110	.	+	.	Parent=Os01t0948200-00
Chr01	irgsp1_rep	mRNA	41716035	41718600	.	+	.	ID=Os01t0948300-01;Name=Os01t0948300-01;Locus_id=Os01g0948300;Note=Cellular retinaldehyde-binding/triple function%2C C-terminal domain containing protein.;Transcript_evidence=AK102153 (DDBJ%2C Best hit);ORF_evidence=NP_001148762.1 (RefSeq);InterPro=Cellular retinaldehyde-binding/triple function%2C C-terminal (IPR001251);NIAS_FLcDNA=J033086E01;Expression=AK102153;TENOR=Os01t0948300-01;KEGG=Os01t0948300-01
Chr01	irgsp1_rep	five_prime_UTR	41716035	41716103	.	+	.	Parent=Os01t0948300-01
Chr01	irgsp1_rep	CDS	41716104	41716350	.	+	0	Parent=Os01t0948300-01
Chr01	irgsp1_rep	CDS	41716983	41717247	.	+	2	Parent=Os01t0948300-01
Chr01	irgsp1_rep	CDS	41718030	41718279	.	+	1	Parent=Os01t0948300-01
Chr01	irgsp1_rep	three_prime_UTR	41718280	41718600	.	+	.	Parent=Os01t0948300-01
Chr01	irgsp1_rep	mRNA	41718677	41721571	.	-	.	ID=Os01t0948400-01;Name=Os01t0948400-01;Locus_id=Os01g0948400;CGSNL Gene Symbol=P5CR;CGSNL Gene Name=PYRROLINE-5-CARBOXYLATE REDUCTASE;Oryzabase Gene Symbol Synonym(s)=OsP5CR;Oryzabase Gene Name Synonym(s)=delta-pyrroline-5-carboxylate reductase%2C pyrroline-5-carboxylate reductase;Note=Similar to Pyrroline-5-carboxylate reductase (EC 1.5.1.2) (P5CR) (P5C reductase).;Transcript_evidence=AK070184 (DDBJ%2C Best hit);ORF_evidence=C5XHU2 (UniProt);GO=Biological Process: proline biosynthetic process (GO:0006561),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: pyrroline-5-carboxylate reductase activity (GO:0004735),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616);InterPro=Pyrroline-5-carboxylate reductase (IPR000304),NADP oxidoreductase%2C coenzyme F420-dependent (IPR004455),6-phosphogluconate dehydrogenase%2C C-terminal-like (IPR008927),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023044E03;Oryzabase=21738;Expression=AK070184;TENOR=Os01t0948400-01;KEGG=Os01t0948400-01 (EC:1.5.1.2)
Chr01	irgsp1_rep	five_prime_UTR	41721416	41721571	.	-	.	Parent=Os01t0948400-01
Chr01	irgsp1_rep	five_prime_UTR	41721133	41721140	.	-	.	Parent=Os01t0948400-01
Chr01	irgsp1_rep	CDS	41721065	41721132	.	-	0	Parent=Os01t0948400-01
Chr01	irgsp1_rep	CDS	41720830	41720989	.	-	1	Parent=Os01t0948400-01
Chr01	irgsp1_rep	CDS	41720541	41720589	.	-	0	Parent=Os01t0948400-01
Chr01	irgsp1_rep	CDS	41720135	41720226	.	-	2	Parent=Os01t0948400-01
Chr01	irgsp1_rep	CDS	41719835	41719907	.	-	0	Parent=Os01t0948400-01
Chr01	irgsp1_rep	CDS	41719331	41719451	.	-	2	Parent=Os01t0948400-01
Chr01	irgsp1_rep	CDS	41719124	41719229	.	-	1	Parent=Os01t0948400-01
Chr01	irgsp1_rep	CDS	41718861	41719049	.	-	0	Parent=Os01t0948400-01
Chr01	irgsp1_rep	three_prime_UTR	41718677	41718860	.	-	.	Parent=Os01t0948400-01
Chr01	irgsp1_rep	mRNA	41718639	41721571	.	-	.	ID=Os01t0948400-02;Name=Os01t0948400-02;Locus_id=Os01g0948400;RAP-DB Gene Symbol Synonym(s)=OsP5CR;RAP-DB Gene Name Synonym(s)=delta-pyrroline-5-carboxylate reductase%2C pyrroline-5-carboxylate reductase;CGSNL Gene Symbol=P5CR;CGSNL Gene Name=PYRROLINE-5-CARBOXYLATE REDUCTASE;Oryzabase Gene Symbol Synonym(s)=OsP5CR;Oryzabase Gene Name Synonym(s)=delta-pyrroline-5-carboxylate reductase%2C pyrroline-5-carboxylate reductase;Note=Pyrroline-5-carboxylate reductase%2C Proline biosynthesis%2C Response to osmotic and salt stress;Transcript_evidence=AK067368;ORF_evidence=Q8GT01;GO=Biological Process: proline biosynthetic process (GO:0006561),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: pyrroline-5-carboxylate reductase activity (GO:0004735);InterPro=NAD(P)-binding domain superfamily (IPR036291),6-phosphogluconate dehydrogenase-like%2C C-terminal domain superfamily (IPR008927),Pyrroline-5-carboxylate reductase (IPR000304),Pyrroline-5-carboxylate reductase%2C catalytic%2C N-terminal (IPR028939),Pyrroline-5-carboxylate reductase%2C dimerisation domain (IPR029036);NIAS_FLcDNA=J013104L18;Manual Curation=July 22%2C 2020;Literature_PMID=30303953,23661451;Oryzabase=21738;Expression=AK067368;TENOR=Os01t0948400-02
Chr01	irgsp1_rep	five_prime_UTR	41721416	41721571	.	-	.	Parent=Os01t0948400-02
Chr01	irgsp1_rep	five_prime_UTR	41721055	41721140	.	-	.	Parent=Os01t0948400-02
Chr01	irgsp1_rep	CDS	41720830	41721054	.	-	0	Parent=Os01t0948400-02
Chr01	irgsp1_rep	CDS	41720541	41720589	.	-	0	Parent=Os01t0948400-02
Chr01	irgsp1_rep	CDS	41720135	41720226	.	-	2	Parent=Os01t0948400-02
Chr01	irgsp1_rep	CDS	41719835	41719907	.	-	0	Parent=Os01t0948400-02
Chr01	irgsp1_rep	CDS	41719331	41719451	.	-	2	Parent=Os01t0948400-02
Chr01	irgsp1_rep	CDS	41719124	41719229	.	-	1	Parent=Os01t0948400-02
Chr01	irgsp1_rep	CDS	41718861	41719049	.	-	0	Parent=Os01t0948400-02
Chr01	irgsp1_rep	three_prime_UTR	41718639	41718860	.	-	.	Parent=Os01t0948400-02
Chr01	irgsp1_rep	mRNA	41722524	41726196	.	-	.	ID=Os01t0948500-01;Name=Os01t0948500-01;Locus_id=Os01g0948500;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK119342 (DDBJ%2C Best hit);ORF_evidence=XP_002459091.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=001-131-D10;Expression=AK119342;TENOR=Os01t0948500-01;KEGG=Os01t0948500-01
Chr01	irgsp1_rep	five_prime_UTR	41726011	41726196	.	-	.	Parent=Os01t0948500-01
Chr01	irgsp1_rep	CDS	41725750	41726010	.	-	0	Parent=Os01t0948500-01
Chr01	irgsp1_rep	CDS	41724841	41725141	.	-	0	Parent=Os01t0948500-01
Chr01	irgsp1_rep	CDS	41722945	41724401	.	-	2	Parent=Os01t0948500-01
Chr01	irgsp1_rep	three_prime_UTR	41722524	41722944	.	-	.	Parent=Os01t0948500-01
Chr01	irgsp1_rep	mRNA	41728692	41729581	.	-	.	ID=Os01t0948600-01;Name=Os01t0948600-01;Locus_id=Os01g0948600;Note=Conserved hypothetical protein.;Transcript_evidence=AK103603 (DDBJ%2C Best hit);ORF_evidence=Q5JMU3 (UniProt);NIAS_FLcDNA=J033133G02;TENOR=Os01t0948600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	41729313	41729581	.	-	.	Parent=Os01t0948600-01
Chr01	irgsp1_rep	CDS	41729175	41729312	.	-	0	Parent=Os01t0948600-01
Chr01	irgsp1_rep	three_prime_UTR	41728692	41729174	.	-	.	Parent=Os01t0948600-01
Chr01	irgsp1_rep	mRNA	41741395	41743499	.	-	.	ID=Os01t0948900-01;Name=Os01t0948900-01;Locus_id=Os01g0948900;Oryzabase Gene Symbol Synonym(s)=NPR5%2C OsNPR5%2C NH4%2C OsNH4;Oryzabase Gene Name Synonym(s)=NPR1-like gene 5%2C NPR1 homolog 4;Note=Ankyrin repeat containing protein.;Transcript_evidence=AK100894 (DDBJ%2C Best hit);ORF_evidence=A2CIR7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683),Domain of unknown function DUF3420 (IPR024228);NIAS_FLcDNA=J023131A22;Oryzabase=11883;Expression=AK100894;TENOR=Os01t0948900-01;KEGG=Os01t0948900-01
Chr01	irgsp1_rep	five_prime_UTR	41742500	41743499	.	-	.	Parent=Os01t0948900-01
Chr01	irgsp1_rep	CDS	41741486	41742499	.	-	0	Parent=Os01t0948900-01
Chr01	irgsp1_rep	three_prime_UTR	41741395	41741485	.	-	.	Parent=Os01t0948900-01
Chr01	irgsp1_rep	mRNA	41741371	41742625	.	-	.	ID=Os01t0948900-02;Name=Os01t0948900-02;Locus_id=Os01g0948900;Oryzabase Gene Symbol Synonym(s)=NPR5%2C OsNPR5%2C NH4%2C OsNH4;Oryzabase Gene Name Synonym(s)=NPR1-like gene 5%2C NPR1 homolog 4;Note=Ankyrin repeat containing protein.;Transcript_evidence=AK100932 (DDBJ%2C Best hit);ORF_evidence=A2CIR7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683),Domain of unknown function DUF3420 (IPR024228);NIAS_FLcDNA=J023135M02;Oryzabase=11883;Expression=AK100932;TENOR=Os01t0948900-02;KEGG=Os01t0948900-02
Chr01	irgsp1_rep	five_prime_UTR	41742500	41742625	.	-	.	Parent=Os01t0948900-02
Chr01	irgsp1_rep	CDS	41741486	41742499	.	-	0	Parent=Os01t0948900-02
Chr01	irgsp1_rep	three_prime_UTR	41741371	41741485	.	-	.	Parent=Os01t0948900-02
Chr01	irgsp1_rep	mRNA	41741160	41744666	.	-	.	ID=Os01t0948900-03;Name=Os01t0948900-03;Locus_id=Os01g0948900;RAP-DB Gene Symbol Synonym(s)=OsBOP1%2C NH4;RAP-DB Gene Name Synonym(s)=BLADE-ON-PETIOLE1;Oryzabase Gene Symbol Synonym(s)=NPR5%2C OsNPR5%2C NH4%2C OsNH4;Oryzabase Gene Name Synonym(s)=NPR1-like gene 5%2C NPR1 homolog 4;Note=BTB/POX VIRUS AND ZINC FINGER (POZ) domain and ankyrin repeats containing protein%2C Regulator of proximal-distal patterning of leaves;Transcript_evidence=DQ450956;ORF_evidence=A2CIR7;GO=Molecular Function: protein binding (GO:0005515);InterPro=SKP1/BTB/POZ domain superfamily (IPR011333),Ankyrin repeat-containing domain superfamily (IPR036770),BTB/POZ domain (IPR000210),Regulatory protein NPR%2C central domain (IPR024228),Ankyrin repeat-containing domain (IPR020683),Ankyrin repeat (IPR002110);Manual Curation=February 12%2C 2019;Literature_PMID=24919709,30728357;Oryzabase=11883
Chr01	irgsp1_rep	five_prime_UTR	41744230	41744666	.	-	.	Parent=Os01t0948900-03
Chr01	irgsp1_rep	CDS	41743699	41744229	.	-	0	Parent=Os01t0948900-03
Chr01	irgsp1_rep	CDS	41741486	41742475	.	-	0	Parent=Os01t0948900-03
Chr01	irgsp1_rep	three_prime_UTR	41741160	41741485	.	-	.	Parent=Os01t0948900-03
Chr01	irgsp1_rep	mRNA	41783510	41788531	.	-	.	ID=Os01t0949060-01;Name=Os01t0949060-01;Locus_id=Os01g0949060;Note=Hypothetical conserved gene.;Transcript_evidence=AK102412 (DDBJ%2C Best hit);ORF_evidence=Q5JKX9 (UniProt);GO=Molecular Function: single-stranded DNA binding (GO:0003697);InterPro=Primosome PriB/single-strand DNA-binding (IPR000424),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=J033093A04;Expression=AK102412;TENOR=Os01t0949060-01;KEGG=Os01t0949060-01
Chr01	irgsp1_rep	five_prime_UTR	41788462	41788531	.	-	.	Parent=Os01t0949060-01
Chr01	irgsp1_rep	CDS	41788094	41788461	.	-	0	Parent=Os01t0949060-01
Chr01	irgsp1_rep	CDS	41787270	41787408	.	-	1	Parent=Os01t0949060-01
Chr01	irgsp1_rep	CDS	41786514	41786667	.	-	0	Parent=Os01t0949060-01
Chr01	irgsp1_rep	CDS	41784919	41785016	.	-	2	Parent=Os01t0949060-01
Chr01	irgsp1_rep	CDS	41784670	41784832	.	-	0	Parent=Os01t0949060-01
Chr01	irgsp1_rep	CDS	41784540	41784596	.	-	2	Parent=Os01t0949060-01
Chr01	irgsp1_rep	CDS	41784036	41784097	.	-	2	Parent=Os01t0949060-01
Chr01	irgsp1_rep	CDS	41783809	41783955	.	-	0	Parent=Os01t0949060-01
Chr01	irgsp1_rep	three_prime_UTR	41783510	41783808	.	-	.	Parent=Os01t0949060-01
Chr01	irgsp1_rep	mRNA	41787282	41788243	.	+	.	ID=Os01t0949140-00;Name=Os01t0949140-00;Locus_id=Os01g0949140;Note=Hypothetical gene.;Transcript_evidence=BT087016 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0949140-00
Chr01	irgsp1_rep	five_prime_UTR	41787282	41787341	.	+	.	Parent=Os01t0949140-00
Chr01	irgsp1_rep	CDS	41787342	41787425	.	+	0	Parent=Os01t0949140-00
Chr01	irgsp1_rep	CDS	41788113	41788243	.	+	0	Parent=Os01t0949140-00
Chr01	irgsp1_rep	mRNA	41814168	41814793	.	-	.	ID=Os01t0949220-00;Name=Os01t0949220-00;Locus_id=Os01g0949220;Note=Non-protein coding transcript.;Transcript_evidence=CT834874 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os01t0949220-00
Chr01	irgsp1_rep	exon	41814752	41814793	.	-	.	Parent=Os01t0949220-00
Chr01	irgsp1_rep	exon	41814168	41814673	.	-	.	Parent=Os01t0949220-00
Chr01	irgsp1_rep	mRNA	41818327	41818569	.	-	.	ID=Os01t0949260-00;Name=Os01t0949260-00;Locus_id=Os01g0949260;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os01t0949260-00
Chr01	irgsp1_rep	CDS	41818327	41818569	.	-	0	Parent=Os01t0949260-00
Chr01	irgsp1_rep	mRNA	41818382	41819282	.	+	.	ID=Os01t0949300-01;Name=Os01t0949300-01;Locus_id=Os01g0949300;Note=EF-Hand type domain containing protein.;Transcript_evidence=AK058802 (DDBJ%2C Best hit),AK072758 (DDBJ%2C Best hit);ORF_evidence=A3A1I6 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=001-003-B01,J023142M19;Expression=AK058802;TENOR=Os01t0949300-01;KEGG=Os01t0949300-01
Chr01	irgsp1_rep	five_prime_UTR	41818382	41818435	.	+	.	Parent=Os01t0949300-01
Chr01	irgsp1_rep	CDS	41818436	41819050	.	+	0	Parent=Os01t0949300-01
Chr01	irgsp1_rep	three_prime_UTR	41819051	41819282	.	+	.	Parent=Os01t0949300-01
Chr01	irgsp1_rep	mRNA	41822398	41825087	.	-	.	ID=Os01t0949400-01;Name=Os01t0949400-01;Locus_id=Os01g0949400;RAP-DB Gene Symbol Synonym(s)=Se13%2C OsHY2;RAP-DB Gene Name Synonym(s)=Photosensitivity 13;CGSNL Gene Symbol=SE13;CGSNL Gene Name=PHOTOSENSITIVITY 13;Oryzabase Gene Symbol Synonym(s)=Se13%2C OsHY2%2C OsGUN3%2C GUN3%2C PS13;Oryzabase Gene Name Synonym(s)=Genome uncoupled 3%2C Photoperiod-sensitivity-13;Note=PhytoChromobilin (P&Phi%3BB) synthase%2C PhytoChrome Chromophore biosynthesis%2C Photoperiodic response;Transcript_evidence=AK101395;ORF_evidence=Q5JKX8;GO=Biological Process: phytoChromobilin biosynthetic process (GO:0010024),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on the CH-CH group of donors%2C iron-sulfur protein as acceptor (GO:0016636),Molecular Function: cobalt ion binding (GO:0050897);InterPro=Ferredoxin-dependent bilin reductase (IPR009249);NIAS_FLcDNA=J033037A10;Manual Curation=September 12%2C 2017;Literature_PMID=25573482,24659905,20700573;Oryzabase=19182;Expression=AK101395;TENOR=Os01t0949400-01;KEGG=Os01t0949400-01 (EC:1.3.7.4)
Chr01	irgsp1_rep	five_prime_UTR	41825033	41825087	.	-	.	Parent=Os01t0949400-01
Chr01	irgsp1_rep	CDS	41824913	41825032	.	-	0	Parent=Os01t0949400-01
Chr01	irgsp1_rep	CDS	41824222	41824341	.	-	0	Parent=Os01t0949400-01
Chr01	irgsp1_rep	CDS	41823697	41823791	.	-	0	Parent=Os01t0949400-01
Chr01	irgsp1_rep	CDS	41823493	41823586	.	-	1	Parent=Os01t0949400-01
Chr01	irgsp1_rep	CDS	41823275	41823407	.	-	0	Parent=Os01t0949400-01
Chr01	irgsp1_rep	CDS	41823006	41823109	.	-	2	Parent=Os01t0949400-01
Chr01	irgsp1_rep	CDS	41822813	41822863	.	-	0	Parent=Os01t0949400-01
Chr01	irgsp1_rep	CDS	41822527	41822715	.	-	0	Parent=Os01t0949400-01
Chr01	irgsp1_rep	three_prime_UTR	41822398	41822526	.	-	.	Parent=Os01t0949400-01
Chr01	irgsp1_rep	mRNA	41822269	41825087	.	-	.	ID=Os01t0949400-02;Name=Os01t0949400-02;Locus_id=Os01g0949400;CGSNL Gene Symbol=SE13;CGSNL Gene Name=PHOTOSENSITIVITY 13;Oryzabase Gene Symbol Synonym(s)=Se13%2C OsHY2%2C OsGUN3%2C GUN3%2C PS13;Oryzabase Gene Name Synonym(s)=Genome uncoupled 3%2C Photoperiod-sensitivity-13;Note=Similar to elongated mesocotyl1.;Transcript_evidence=AK061271 (DDBJ%2C Best hit);ORF_evidence=NP_001105256.1 (RefSeq);GO=Biological Process: phytoChromobilin biosynthetic process (GO:0010024),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on the CH-CH group of donors%2C iron-sulfur protein as acceptor (GO:0016636),Molecular Function: cobalt ion binding (GO:0050897);InterPro=Ferredoxin-dependent bilin reductase (IPR009249);NIAS_FLcDNA=006-212-D10;Oryzabase=19182;Expression=AK061271;TENOR=Os01t0949400-02;KEGG=Os01t0949400-02 (EC:1.3.7.4)
Chr01	irgsp1_rep	five_prime_UTR	41825033	41825087	.	-	.	Parent=Os01t0949400-02
Chr01	irgsp1_rep	CDS	41824913	41825032	.	-	0	Parent=Os01t0949400-02
Chr01	irgsp1_rep	CDS	41824222	41824341	.	-	0	Parent=Os01t0949400-02
Chr01	irgsp1_rep	CDS	41823697	41823791	.	-	0	Parent=Os01t0949400-02
Chr01	irgsp1_rep	CDS	41823376	41823586	.	-	1	Parent=Os01t0949400-02
Chr01	irgsp1_rep	three_prime_UTR	41823275	41823375	.	-	.	Parent=Os01t0949400-02
Chr01	irgsp1_rep	three_prime_UTR	41823006	41823109	.	-	.	Parent=Os01t0949400-02
Chr01	irgsp1_rep	three_prime_UTR	41822813	41822863	.	-	.	Parent=Os01t0949400-02
Chr01	irgsp1_rep	three_prime_UTR	41822269	41822715	.	-	.	Parent=Os01t0949400-02
Chr01	irgsp1_rep	mRNA	41826111	41827156	.	-	.	ID=Os01t0949500-01;Name=Os01t0949500-01;Locus_id=Os01g0949500;CGSNL Gene Symbol=CML10;CGSNL Gene Name=CALMODULIN-LIKE PROTEIN 10;Oryzabase Gene Symbol Synonym(s)=OsCML10;Oryzabase Gene Name Synonym(s)=calmodulin-like protein 10;Note=Similar to Calmodulin (CaM).;Transcript_evidence=AK070662 (DDBJ%2C Best hit),AK068769 (DDBJ%2C Best hit),AK104094 (DDBJ%2C Best hit),AK104159 (DDBJ%2C Best hit);ORF_evidence=B6U518 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J023058D06,J013166F08,001-031-F09,006-211-A05;Oryzabase=10496;Expression=AK070662;TENOR=Os01t0949500-01;KEGG=Os01t0949500-01
Chr01	irgsp1_rep	five_prime_UTR	41827089	41827156	.	-	.	Parent=Os01t0949500-01
Chr01	irgsp1_rep	CDS	41826531	41827088	.	-	0	Parent=Os01t0949500-01
Chr01	irgsp1_rep	three_prime_UTR	41826111	41826530	.	-	.	Parent=Os01t0949500-01
Chr01	irgsp1_rep	mRNA	41839952	41841440	.	+	.	ID=Os01t0949700-01;Name=Os01t0949700-01;Locus_id=Os01g0949700;CGSNL Gene Symbol=GSTU7;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 7;Oryzabase Gene Symbol Synonym(s)=OsGSTU7;Note=Glutathione S-transferase%2C C-terminal domain containing protein.;Transcript_evidence=AK069037 (DDBJ%2C Best hit);ORF_evidence=Q10HA8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=J023004F17;Oryzabase=9525;Expression=AK069037;TENOR=Os01t0949700-01;KEGG=Os01t0949700-01
Chr01	irgsp1_rep	five_prime_UTR	41839952	41839997	.	+	.	Parent=Os01t0949700-01
Chr01	irgsp1_rep	CDS	41839998	41840321	.	+	0	Parent=Os01t0949700-01
Chr01	irgsp1_rep	CDS	41840665	41841060	.	+	0	Parent=Os01t0949700-01
Chr01	irgsp1_rep	three_prime_UTR	41841061	41841440	.	+	.	Parent=Os01t0949700-01
Chr01	irgsp1_rep	mRNA	41841787	41842619	.	+	.	ID=Os01t0949750-00;Name=Os01t0949750-00;Locus_id=Os01g0949750;CGSNL Gene Symbol=GSTU35;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 35;Oryzabase Gene Symbol Synonym(s)=OsGSTU35;Oryzabase Gene Name Synonym(s)=glutathione transferase U35;Note=Similar to Glutathione S-transferase GST 28 (Fragment).;Transcript_evidence=CU861793 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);Oryzabase=9552;TENOR=Os01t0949750-00;KEGG=Os01t0949750-00 (EC:2.5.1.18)
Chr01	irgsp1_rep	CDS	41841787	41842071	.	+	0	Parent=Os01t0949750-00
Chr01	irgsp1_rep	CDS	41842178	41842549	.	+	0	Parent=Os01t0949750-00
Chr01	irgsp1_rep	three_prime_UTR	41842550	41842619	.	+	.	Parent=Os01t0949750-00
Chr01	irgsp1_rep	mRNA	41844012	41845305	.	+	.	ID=Os01t0949800-01;Name=Os01t0949800-01;Locus_id=Os01g0949800;CGSNL Gene Symbol=GSTU36;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 36;Oryzabase Gene Symbol Synonym(s)=OsGSTU36;Note=Similar to Glutathione S-transferase GST 28 (EC 2.5.1.18) (Fragment).;Transcript_evidence=AK064612 (DDBJ%2C Best hit);ORF_evidence=Q10HA8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=002-113-B12;Oryzabase=9553;Expression=AK064612;TENOR=Os01t0949800-01;KEGG=Os01t0949800-01 (EC:2.5.1.18)
Chr01	irgsp1_rep	five_prime_UTR	41844012	41844057	.	+	.	Parent=Os01t0949800-01
Chr01	irgsp1_rep	CDS	41844058	41844367	.	+	0	Parent=Os01t0949800-01
Chr01	irgsp1_rep	CDS	41844805	41845190	.	+	2	Parent=Os01t0949800-01
Chr01	irgsp1_rep	three_prime_UTR	41845191	41845305	.	+	.	Parent=Os01t0949800-01
Chr01	irgsp1_rep	mRNA	41846413	41847329	.	+	.	ID=Os01t0949900-01;Name=Os01t0949900-01;Locus_id=Os01g0949900;CGSNL Gene Symbol=GSTU37;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 37;Oryzabase Gene Symbol Synonym(s)=OsGSTU37;Oryzabase Gene Name Synonym(s)=tau class glutathione S-transferase 37;Note=Conserved hypothetical protein.;Transcript_evidence=AK243403 (DDBJ%2C Best hit);ORF_evidence=F2DVG2 (UniProt);NIAS_FLcDNA=J100065A02;Oryzabase=9554;TENOR=Os01t0949900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	41846413	41846755	.	+	.	Parent=Os01t0949900-01
Chr01	irgsp1_rep	five_prime_UTR	41846869	41846911	.	+	.	Parent=Os01t0949900-01
Chr01	irgsp1_rep	CDS	41846912	41847091	.	+	0	Parent=Os01t0949900-01
Chr01	irgsp1_rep	three_prime_UTR	41847092	41847329	.	+	.	Parent=Os01t0949900-01
Chr01	irgsp1_rep	mRNA	41847705	41849077	.	+	.	ID=Os01t0950000-01;Name=Os01t0950000-01;Locus_id=Os01g0950000;CGSNL Gene Symbol=GSTU41;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 41;Oryzabase Gene Symbol Synonym(s)=OsGSTU41;Note=Similar to Glutathione S-transferase GST 28 (EC 2.5.1.18) (Fragment).;Transcript_evidence=AK064627 (DDBJ%2C Best hit);ORF_evidence=Q9FQB1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=002-113-F04;Oryzabase=9558;Expression=AK064627;TENOR=Os01t0950000-01;KEGG=Os01t0950000-01 (EC:2.5.1.18)
Chr01	irgsp1_rep	five_prime_UTR	41847705	41847729	.	+	.	Parent=Os01t0950000-01
Chr01	irgsp1_rep	CDS	41847730	41848035	.	+	0	Parent=Os01t0950000-01
Chr01	irgsp1_rep	CDS	41848510	41848890	.	+	0	Parent=Os01t0950000-01
Chr01	irgsp1_rep	three_prime_UTR	41848891	41849077	.	+	.	Parent=Os01t0950000-01
Chr01	irgsp1_rep	mRNA	41848481	41848810	.	-	.	ID=Os01t0950100-00;Name=Os01t0950100-00;Locus_id=Os01g0950100;Note=Non-protein coding transcript.;Transcript_evidence=EU946238 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0950100-00
Chr01	irgsp1_rep	exon	41848481	41848810	.	-	.	Parent=Os01t0950100-00
Chr01	irgsp1_rep	mRNA	41853850	41854831	.	-	.	ID=Os01t0950200-01;Name=Os01t0950200-01;Locus_id=Os01g0950200;Note=Hypothetical protein.;Transcript_evidence=AK109284 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-188-C01;Expression=AK109284;TENOR=Os01t0950200-01;KEGG=Os01t0950200-01
Chr01	irgsp1_rep	five_prime_UTR	41854536	41854831	.	-	.	Parent=Os01t0950200-01
Chr01	irgsp1_rep	CDS	41853996	41854535	.	-	0	Parent=Os01t0950200-01
Chr01	irgsp1_rep	three_prime_UTR	41853850	41853995	.	-	.	Parent=Os01t0950200-01
Chr01	irgsp1_rep	mRNA	41854018	41854878	.	+	.	ID=Os01t0950300-01;Name=Os01t0950300-01;Locus_id=Os01g0950300;CGSNL Gene Symbol=GSTU42;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 42;Oryzabase Gene Symbol Synonym(s)=OsGSTU42;Note=Conserved hypothetical protein.;Transcript_evidence=AK107822 (DDBJ%2C Best hit);ORF_evidence=F2DVG2 (UniProt);NIAS_FLcDNA=002-133-G02;Oryzabase=9559;TENOR=Os01t0950300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	41854018	41854019	.	+	.	Parent=Os01t0950300-01
Chr01	irgsp1_rep	CDS	41854020	41854862	.	+	0	Parent=Os01t0950300-01
Chr01	irgsp1_rep	three_prime_UTR	41854863	41854878	.	+	.	Parent=Os01t0950300-01
Chr01	irgsp1_rep	mRNA	41861562	41863695	.	+	.	ID=Os01t0950700-01;Name=Os01t0950700-01;Locus_id=Os01g0950700;Note=Conserved hypothetical protein.;Transcript_evidence=AK107123 (DDBJ%2C Best hit);ORF_evidence=B9EWG4 (UniProt);NIAS_FLcDNA=002-124-B08;TENOR=Os01t0950700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	41861562	41861562	.	+	.	Parent=Os01t0950700-01
Chr01	irgsp1_rep	CDS	41861563	41862417	.	+	0	Parent=Os01t0950700-01
Chr01	irgsp1_rep	three_prime_UTR	41862418	41862710	.	+	.	Parent=Os01t0950700-01
Chr01	irgsp1_rep	three_prime_UTR	41862818	41863263	.	+	.	Parent=Os01t0950700-01
Chr01	irgsp1_rep	three_prime_UTR	41863371	41863695	.	+	.	Parent=Os01t0950700-01
Chr01	irgsp1_rep	mRNA	41864661	41866546	.	-	.	ID=Os01t0950800-01;Name=Os01t0950800-01;Locus_id=Os01g0950800;Note=Essential protein Yae1%2C N-terminal domain containing protein.;Transcript_evidence=AK119473 (DDBJ%2C Best hit);ORF_evidence=B8A967 (UniProt);InterPro=Essential protein Yae1%2C N-terminal (IPR019191);NIAS_FLcDNA=001-134-B01;Expression=AK119473;TENOR=Os01t0950800-01;KEGG=Os01t0950800-01
Chr01	irgsp1_rep	five_prime_UTR	41866289	41866546	.	-	.	Parent=Os01t0950800-01
Chr01	irgsp1_rep	five_prime_UTR	41866177	41866194	.	-	.	Parent=Os01t0950800-01
Chr01	irgsp1_rep	CDS	41866080	41866176	.	-	0	Parent=Os01t0950800-01
Chr01	irgsp1_rep	CDS	41865789	41865910	.	-	2	Parent=Os01t0950800-01
Chr01	irgsp1_rep	CDS	41865497	41865618	.	-	0	Parent=Os01t0950800-01
Chr01	irgsp1_rep	CDS	41865109	41865400	.	-	1	Parent=Os01t0950800-01
Chr01	irgsp1_rep	three_prime_UTR	41864661	41865108	.	-	.	Parent=Os01t0950800-01
Chr01	irgsp1_rep	mRNA	41867363	41869684	.	+	.	ID=Os01t0950833-01;Name=Os01t0950833-01;Locus_id=Os01g0950833;Note=Hypothetical gene.;Transcript_evidence=AK287947 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J075026O15;TENOR=Os01t0950833-01;KEGG=Os01t0950833-01
Chr01	irgsp1_rep	five_prime_UTR	41867363	41867578	.	+	.	Parent=Os01t0950833-01
Chr01	irgsp1_rep	five_prime_UTR	41867717	41867815	.	+	.	Parent=Os01t0950833-01
Chr01	irgsp1_rep	five_prime_UTR	41867892	41868025	.	+	.	Parent=Os01t0950833-01
Chr01	irgsp1_rep	five_prime_UTR	41868286	41868373	.	+	.	Parent=Os01t0950833-01
Chr01	irgsp1_rep	five_prime_UTR	41868554	41868600	.	+	.	Parent=Os01t0950833-01
Chr01	irgsp1_rep	five_prime_UTR	41869267	41869309	.	+	.	Parent=Os01t0950833-01
Chr01	irgsp1_rep	CDS	41869310	41869333	.	+	0	Parent=Os01t0950833-01
Chr01	irgsp1_rep	CDS	41869424	41869684	.	+	0	Parent=Os01t0950833-01
Chr01	irgsp1_rep	mRNA	41867388	41869689	.	-	.	ID=Os01t0950866-00;Name=Os01t0950866-00;Locus_id=Os01g0950866;Note=Similar to proline synthetase-like protein.;Transcript_evidence=AK333803 (DDBJ);ORF_evidence=NP_001152502.1 (RefSeq);InterPro=Alanine racemase%2C N-terminal (IPR001608),Uncharacterised protein family UPF0001 (IPR011078);TENOR=Os01t0950866-00;KEGG=Os01t0950866-00
Chr01	irgsp1_rep	five_prime_UTR	41869646	41869689	.	-	.	Parent=Os01t0950866-00
Chr01	irgsp1_rep	CDS	41869424	41869645	.	-	0	Parent=Os01t0950866-00
Chr01	irgsp1_rep	CDS	41869267	41869333	.	-	0	Parent=Os01t0950866-00
Chr01	irgsp1_rep	CDS	41868554	41868600	.	-	2	Parent=Os01t0950866-00
Chr01	irgsp1_rep	CDS	41868286	41868373	.	-	0	Parent=Os01t0950866-00
Chr01	irgsp1_rep	CDS	41867892	41868025	.	-	2	Parent=Os01t0950866-00
Chr01	irgsp1_rep	CDS	41867717	41867815	.	-	0	Parent=Os01t0950866-00
Chr01	irgsp1_rep	CDS	41867501	41867578	.	-	0	Parent=Os01t0950866-00
Chr01	irgsp1_rep	three_prime_UTR	41867388	41867500	.	-	.	Parent=Os01t0950866-00
Chr01	irgsp1_rep	mRNA	41869950	41873872	.	+	.	ID=Os01t0950900-01;Name=Os01t0950900-01;Locus_id=Os01g0950900;CGSNL Gene Symbol=OSCA2.5;CGSNL Gene Name=HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 2.5;Oryzabase Gene Symbol Synonym(s)=OsEnS-22%2C OsOSCA2.5%2C OsIOSCA2.5%2C OsDDP2%2C DDP2%2C OsDDP2.1%2C OsDDP2.2;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 22%2C Hyperosmolality-gated calcium-permeable channel 2.5%2C DUF221 Domain containing Protein 2;Note=Protein of unknown function DUF221 domain containing protein.;Transcript_evidence=AK101121 (DDBJ%2C Best hit);ORF_evidence=NP_001118837.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Domain of unknown function DUF221 (IPR003864);NIAS_FLcDNA=J033025J04;Oryzabase=18361;Expression=AK101121;TENOR=Os01t0950900-01;KEGG=Os01t0950900-01
Chr01	irgsp1_rep	five_prime_UTR	41869950	41869982	.	+	.	Parent=Os01t0950900-01
Chr01	irgsp1_rep	CDS	41869983	41870263	.	+	0	Parent=Os01t0950900-01
Chr01	irgsp1_rep	CDS	41870371	41870514	.	+	1	Parent=Os01t0950900-01
Chr01	irgsp1_rep	CDS	41870877	41870940	.	+	1	Parent=Os01t0950900-01
Chr01	irgsp1_rep	CDS	41871188	41871397	.	+	0	Parent=Os01t0950900-01
Chr01	irgsp1_rep	CDS	41871491	41871676	.	+	0	Parent=Os01t0950900-01
Chr01	irgsp1_rep	CDS	41871821	41872119	.	+	0	Parent=Os01t0950900-01
Chr01	irgsp1_rep	CDS	41872225	41872504	.	+	1	Parent=Os01t0950900-01
Chr01	irgsp1_rep	CDS	41872586	41872858	.	+	0	Parent=Os01t0950900-01
Chr01	irgsp1_rep	CDS	41873164	41873382	.	+	0	Parent=Os01t0950900-01
Chr01	irgsp1_rep	CDS	41873505	41873654	.	+	0	Parent=Os01t0950900-01
Chr01	irgsp1_rep	three_prime_UTR	41873655	41873872	.	+	.	Parent=Os01t0950900-01
Chr01	irgsp1_rep	mRNA	41873950	41880597	.	-	.	ID=Os01t0951000-01;Name=Os01t0951000-01;Locus_id=Os01g0951000;Oryzabase Gene Symbol Synonym(s)=OsWD40-32%2C OsFY%2C FY;Note=Conserved hypothetical protein.;Transcript_evidence=AK111493 (DDBJ%2C Best hit);ORF_evidence=Q0R3J2 (UniProt);NIAS_FLcDNA=J013000B23;Oryzabase=10713;TENOR=Os01t0951000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	41880528	41880597	.	-	.	Parent=Os01t0951000-01
Chr01	irgsp1_rep	CDS	41880308	41880527	.	-	0	Parent=Os01t0951000-01
Chr01	irgsp1_rep	CDS	41880111	41880202	.	-	2	Parent=Os01t0951000-01
Chr01	irgsp1_rep	CDS	41879800	41879868	.	-	0	Parent=Os01t0951000-01
Chr01	irgsp1_rep	CDS	41878920	41879024	.	-	0	Parent=Os01t0951000-01
Chr01	irgsp1_rep	CDS	41878278	41878352	.	-	0	Parent=Os01t0951000-01
Chr01	irgsp1_rep	three_prime_UTR	41878270	41878277	.	-	.	Parent=Os01t0951000-01
Chr01	irgsp1_rep	three_prime_UTR	41878110	41878192	.	-	.	Parent=Os01t0951000-01
Chr01	irgsp1_rep	three_prime_UTR	41877916	41877987	.	-	.	Parent=Os01t0951000-01
Chr01	irgsp1_rep	three_prime_UTR	41877732	41877829	.	-	.	Parent=Os01t0951000-01
Chr01	irgsp1_rep	three_prime_UTR	41877547	41877606	.	-	.	Parent=Os01t0951000-01
Chr01	irgsp1_rep	three_prime_UTR	41877417	41877477	.	-	.	Parent=Os01t0951000-01
Chr01	irgsp1_rep	three_prime_UTR	41877238	41877325	.	-	.	Parent=Os01t0951000-01
Chr01	irgsp1_rep	three_prime_UTR	41876620	41876683	.	-	.	Parent=Os01t0951000-01
Chr01	irgsp1_rep	three_prime_UTR	41876302	41876380	.	-	.	Parent=Os01t0951000-01
Chr01	irgsp1_rep	three_prime_UTR	41875920	41876009	.	-	.	Parent=Os01t0951000-01
Chr01	irgsp1_rep	three_prime_UTR	41875586	41875674	.	-	.	Parent=Os01t0951000-01
Chr01	irgsp1_rep	three_prime_UTR	41874918	41875363	.	-	.	Parent=Os01t0951000-01
Chr01	irgsp1_rep	three_prime_UTR	41874530	41874796	.	-	.	Parent=Os01t0951000-01
Chr01	irgsp1_rep	three_prime_UTR	41873950	41874404	.	-	.	Parent=Os01t0951000-01
Chr01	irgsp1_rep	mRNA	41874009	41875650	.	-	.	ID=Os01t0951000-02;Name=Os01t0951000-02;Locus_id=Os01g0951000;Oryzabase Gene Symbol Synonym(s)=OsWD40-32%2C OsFY%2C FY;Note=Similar to WD-repeat protein 33.;Transcript_evidence=AK101794 (DDBJ%2C Best hit);ORF_evidence=B6SPQ9 (UniProt);NIAS_FLcDNA=J033065O20;Oryzabase=10713;Expression=AK101794;TENOR=Os01t0951000-02;KEGG=Os01t0951000-02
Chr01	irgsp1_rep	five_prime_UTR	41875650	41875650	.	-	.	Parent=Os01t0951000-02
Chr01	irgsp1_rep	CDS	41875586	41875649	.	-	0	Parent=Os01t0951000-02
Chr01	irgsp1_rep	CDS	41874918	41875363	.	-	2	Parent=Os01t0951000-02
Chr01	irgsp1_rep	CDS	41874530	41874796	.	-	0	Parent=Os01t0951000-02
Chr01	irgsp1_rep	CDS	41874330	41874404	.	-	0	Parent=Os01t0951000-02
Chr01	irgsp1_rep	three_prime_UTR	41874009	41874329	.	-	.	Parent=Os01t0951000-02
Chr01	irgsp1_rep	mRNA	41882560	41886264	.	+	.	ID=Os01t0951100-01;Name=Os01t0951100-01;Locus_id=Os01g0951100;Note=Arf GTPase activating protein family protein.;Transcript_evidence=AK073021 (DDBJ%2C Best hit);ORF_evidence=E5GCJ9 (UniProt);GO=Biological Process: regulation of ARF GTPase activity (GO:0032312),Molecular Function: protein binding (GO:0005515),Molecular Function: ARF GTPase activator activity (GO:0008060),Molecular Function: zinc ion binding (GO:0008270);InterPro=C2 calcium-dependent membrane targeting (IPR000008),Arf GTPase activating protein (IPR001164),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=J023150B09;Expression=AK073021;TENOR=Os01t0951100-01;KEGG=Os01t0951100-01
Chr01	irgsp1_rep	five_prime_UTR	41882560	41882728	.	+	.	Parent=Os01t0951100-01
Chr01	irgsp1_rep	CDS	41882729	41882790	.	+	0	Parent=Os01t0951100-01
Chr01	irgsp1_rep	CDS	41882963	41883033	.	+	1	Parent=Os01t0951100-01
Chr01	irgsp1_rep	CDS	41883450	41883543	.	+	2	Parent=Os01t0951100-01
Chr01	irgsp1_rep	CDS	41883926	41884001	.	+	1	Parent=Os01t0951100-01
Chr01	irgsp1_rep	CDS	41884771	41884934	.	+	0	Parent=Os01t0951100-01
Chr01	irgsp1_rep	CDS	41885069	41885246	.	+	1	Parent=Os01t0951100-01
Chr01	irgsp1_rep	CDS	41885328	41885450	.	+	0	Parent=Os01t0951100-01
Chr01	irgsp1_rep	CDS	41885536	41885631	.	+	0	Parent=Os01t0951100-01
Chr01	irgsp1_rep	CDS	41885732	41886013	.	+	0	Parent=Os01t0951100-01
Chr01	irgsp1_rep	three_prime_UTR	41886014	41886264	.	+	.	Parent=Os01t0951100-01
Chr01	irgsp1_rep	mRNA	41887067	41890848	.	+	.	ID=Os01t0951200-01;Name=Os01t0951200-01;Locus_id=Os01g0951200;Oryzabase Gene Symbol Synonym(s)=UMPS1;Oryzabase Gene Name Synonym(s)=UMP synthase 1;Note=Similar to Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) (OMP decarboxylase) (OMPDCase) (OMPdecase) (Uridine 5'-monophosphate synthase) (UMP synthase).;Transcript_evidence=AK069565 (DDBJ%2C Best hit);ORF_evidence=Q7FZ76 (UniProt);GO=Biological Process: 'de novo' pyrimidine base biosynthetic process (GO:0006207),Biological Process: pyrimidine nucleotide biosynthetic process (GO:0006221),Biological Process: metabolic process (GO:0008152),Biological Process: nucleoside metabolic process (GO:0009116),Biological Process: 'de novo' UMP biosynthetic process (GO:0044205),Molecular Function: catalytic activity (GO:0003824),Molecular Function: orotate phosphoribosyltransferase activity (GO:0004588),Molecular Function: orotidine-5'-phosphate decarboxylase activity (GO:0004590);InterPro=Phosphoribosyltransferase (IPR000836),Orotidine 5'-phosphate decarboxylase domain (IPR001754),Orotate phosphoribosyl transferase%2C clade 1 (IPR004467),Ribulose-phosphate binding barrel (IPR011060),Aldolase-type TIM barrel (IPR013785),Orotidine 5'-phosphate decarboxylase (IPR014732),Orotidine 5'-phosphate decarboxylase%2C active site (IPR018089),Orotate phosphoribosyltransferase (IPR023031);NIAS_FLcDNA=J023023L08;Oryzabase=13850;Expression=AK069565;TENOR=Os01t0951200-01;KEGG=Os01t0951200-01 (EC:2.4.2.10%2C EC:4.1.1.23)
Chr01	irgsp1_rep	five_prime_UTR	41887067	41887165	.	+	.	Parent=Os01t0951200-01
Chr01	irgsp1_rep	CDS	41887166	41887960	.	+	0	Parent=Os01t0951200-01
Chr01	irgsp1_rep	CDS	41888633	41888716	.	+	0	Parent=Os01t0951200-01
Chr01	irgsp1_rep	CDS	41888818	41888900	.	+	0	Parent=Os01t0951200-01
Chr01	irgsp1_rep	CDS	41888982	41889069	.	+	1	Parent=Os01t0951200-01
Chr01	irgsp1_rep	CDS	41889186	41889440	.	+	0	Parent=Os01t0951200-01
Chr01	irgsp1_rep	CDS	41890171	41890299	.	+	0	Parent=Os01t0951200-01
Chr01	irgsp1_rep	three_prime_UTR	41890300	41890848	.	+	.	Parent=Os01t0951200-01
Chr01	irgsp1_rep	mRNA	41892688	41896238	.	+	.	ID=Os01t0951400-01;Name=Os01t0951400-01;Locus_id=Os01g0951400;Oryzabase Gene Symbol Synonym(s)=UMPS2;Oryzabase Gene Name Synonym(s)=UMP synthase 2;Note=Similar to Uridine 5'-monophosphate synthase (UMP synthase).;Transcript_evidence=AK102468 (DDBJ%2C Best hit);ORF_evidence=Q7FZ76 (UniProt);GO=Biological Process: 'de novo' pyrimidine base biosynthetic process (GO:0006207),Biological Process: metabolic process (GO:0008152),Biological Process: nucleoside metabolic process (GO:0009116),Biological Process: 'de novo' UMP biosynthetic process (GO:0044205),Molecular Function: catalytic activity (GO:0003824),Molecular Function: orotidine-5'-phosphate decarboxylase activity (GO:0004590);InterPro=Phosphoribosyltransferase (IPR000836),Orotidine 5&apos%3B-phosphate decarboxylase domain (IPR001754),Ribulose-phosphate binding barrel (IPR011060),Aldolase-type TIM barrel (IPR013785),Orotidine 5&apos%3B-phosphate decarboxylase (IPR014732),Orotidine 5&apos%3B-phosphate decarboxylase%2C active site (IPR018089);NIAS_FLcDNA=J033094F19;Oryzabase=13851;Expression=AK102468;TENOR=Os01t0951400-01;KEGG=Os01t0951400-01 (EC:2.4.2.10%2C EC:4.1.1.23)
Chr01	irgsp1_rep	five_prime_UTR	41892688	41892761	.	+	.	Parent=Os01t0951400-01
Chr01	irgsp1_rep	CDS	41892762	41893550	.	+	0	Parent=Os01t0951400-01
Chr01	irgsp1_rep	CDS	41894342	41894425	.	+	0	Parent=Os01t0951400-01
Chr01	irgsp1_rep	CDS	41894972	41895054	.	+	0	Parent=Os01t0951400-01
Chr01	irgsp1_rep	CDS	41895142	41895229	.	+	1	Parent=Os01t0951400-01
Chr01	irgsp1_rep	CDS	41895377	41895631	.	+	0	Parent=Os01t0951400-01
Chr01	irgsp1_rep	CDS	41895916	41896044	.	+	0	Parent=Os01t0951400-01
Chr01	irgsp1_rep	three_prime_UTR	41896045	41896238	.	+	.	Parent=Os01t0951400-01
Chr01	irgsp1_rep	mRNA	41892711	41896235	.	+	.	ID=Os01t0951400-02;Name=Os01t0951400-02;Locus_id=Os01g0951400;Oryzabase Gene Symbol Synonym(s)=UMPS2;Oryzabase Gene Name Synonym(s)=UMP synthase 2;Note=Similar to UMP synthase.;Transcript_evidence=AK058654 (DDBJ%2C Best hit);ORF_evidence=NP_001105881.1 (RefSeq);GO=Biological Process: 'de novo' pyrimidine base biosynthetic process (GO:0006207),Biological Process: metabolic process (GO:0008152),Biological Process: nucleoside metabolic process (GO:0009116),Molecular Function: catalytic activity (GO:0003824),Molecular Function: orotate phosphoribosyltransferase activity (GO:0004588),Molecular Function: orotidine-5'-phosphate decarboxylase activity (GO:0004590);InterPro=Phosphoribosyltransferase (IPR000836),Orotidine 5'-phosphate decarboxylase domain (IPR001754),Ribulose-phosphate binding barrel (IPR011060),Aldolase-type TIM barrel (IPR013785),Orotidine 5'-phosphate decarboxylase%2C active site (IPR018089),Orotate phosphoribosyltransferase (IPR023031);NIAS_FLcDNA=001-018-F05;Oryzabase=13851;Expression=AK058654;TENOR=Os01t0951400-02;KEGG=Os01t0951400-02 (EC:2.4.2.10%2C EC:4.1.1.23)
Chr01	irgsp1_rep	CDS	41892711	41893550	.	+	0	Parent=Os01t0951400-02
Chr01	irgsp1_rep	CDS	41894342	41894425	.	+	0	Parent=Os01t0951400-02
Chr01	irgsp1_rep	CDS	41894972	41895054	.	+	0	Parent=Os01t0951400-02
Chr01	irgsp1_rep	CDS	41895142	41895190	.	+	1	Parent=Os01t0951400-02
Chr01	irgsp1_rep	CDS	41895501	41895515	.	+	0	Parent=Os01t0951400-02
Chr01	irgsp1_rep	three_prime_UTR	41895516	41895631	.	+	.	Parent=Os01t0951400-02
Chr01	irgsp1_rep	three_prime_UTR	41895916	41896235	.	+	.	Parent=Os01t0951400-02
Chr01	irgsp1_rep	mRNA	41896510	41898331	.	-	.	ID=Os01t0951500-01;Name=Os01t0951500-01;Locus_id=Os01g0951500;CGSNL Gene Symbol=CYP94E2;CGSNL Gene Name=CYTOCHROME P450 94E2;Oryzabase Gene Symbol Synonym(s)=OsCYP94E2;Oryzabase Gene Name Synonym(s)=CytoChrome P450 94E2;Note=CytoChrome P450 family protein.;Transcript_evidence=AK240946 (DDBJ%2C Best hit);ORF_evidence=B4F9Q6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J065043B20;Oryzabase=23113;TENOR=Os01t0951500-01;KEGG=Os01t0951500-01 (EC:1.14.15.3)
Chr01	irgsp1_rep	five_prime_UTR	41898280	41898331	.	-	.	Parent=Os01t0951500-01
Chr01	irgsp1_rep	CDS	41896639	41898279	.	-	0	Parent=Os01t0951500-01
Chr01	irgsp1_rep	three_prime_UTR	41896510	41896638	.	-	.	Parent=Os01t0951500-01
Chr01	irgsp1_rep	mRNA	41904236	41907449	.	-	.	ID=Os01t0951800-01;Name=Os01t0951800-01;Locus_id=Os01g0951800;Note=Tetratricopeptide repeat 11 Fission 1 protein domain containing protein.;Transcript_evidence=AK069239 (DDBJ%2C Best hit);ORF_evidence=B6T224 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat 11 Fission 1 protein (IPR016543);NIAS_FLcDNA=J023010G04;Expression=AK069239;TENOR=Os01t0951800-01;KEGG=Os01t0951800-01
Chr01	irgsp1_rep	five_prime_UTR	41907393	41907449	.	-	.	Parent=Os01t0951800-01
Chr01	irgsp1_rep	CDS	41907300	41907392	.	-	0	Parent=Os01t0951800-01
Chr01	irgsp1_rep	CDS	41905945	41906074	.	-	0	Parent=Os01t0951800-01
Chr01	irgsp1_rep	CDS	41905715	41905836	.	-	2	Parent=Os01t0951800-01
Chr01	irgsp1_rep	CDS	41905018	41905081	.	-	0	Parent=Os01t0951800-01
Chr01	irgsp1_rep	CDS	41904472	41904554	.	-	2	Parent=Os01t0951800-01
Chr01	irgsp1_rep	three_prime_UTR	41904236	41904471	.	-	.	Parent=Os01t0951800-01
Chr01	irgsp1_rep	mRNA	41914683	41915921	.	+	.	ID=Os01t0952000-01;Name=Os01t0952000-01;Locus_id=Os01g0952000;Oryzabase Gene Symbol Synonym(s)=GER8%2C OsGLP1-4%2C GLP1-4%2C OsGLP1-3%2C GLP1-3;Oryzabase Gene Name Synonym(s)=germin-like protein 8%2C german-like protein 1-4;Note=Similar to Germin-like protein 1-3.;Transcript_evidence=AK099691 (DDBJ%2C Best hit);ORF_evidence=Q942A8 (UniProt);GO=Cellular Component: apoplast (GO:0048046),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),Germin%2C manganese binding site (IPR019780);NIAS_FLcDNA=J013073E02;Oryzabase=15707;TENOR=Os01t0952000-01;KEGG=Os01t0952000-01
Chr01	irgsp1_rep	five_prime_UTR	41914683	41914801	.	+	.	Parent=Os01t0952000-01
Chr01	irgsp1_rep	CDS	41914802	41914927	.	+	0	Parent=Os01t0952000-01
Chr01	irgsp1_rep	CDS	41915124	41915615	.	+	0	Parent=Os01t0952000-01
Chr01	irgsp1_rep	three_prime_UTR	41915616	41915921	.	+	.	Parent=Os01t0952000-01
Chr01	irgsp1_rep	mRNA	41914684	41915921	.	+	.	ID=Os01t0952000-02;Name=Os01t0952000-02;Locus_id=Os01g0952000;Oryzabase Gene Symbol Synonym(s)=GER8%2C OsGLP1-4%2C GLP1-4%2C OsGLP1-3%2C GLP1-3;Oryzabase Gene Name Synonym(s)=germin-like protein 8%2C german-like protein 1-4;Note=RmlC-like jelly roll fold domain containing protein.;Transcript_evidence=AK060864 (DDBJ%2C Best hit);ORF_evidence=Q942A8 (UniProt);GO=Cellular Component: apoplast (GO:0048046),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),Germin%2C manganese binding site (IPR019780);NIAS_FLcDNA=001-034-G07;Oryzabase=15707;Expression=AK060864;TENOR=Os01t0952000-02;KEGG=Os01t0952000-02
Chr01	irgsp1_rep	five_prime_UTR	41914684	41914823	.	+	.	Parent=Os01t0952000-02
Chr01	irgsp1_rep	CDS	41914824	41914947	.	+	0	Parent=Os01t0952000-02
Chr01	irgsp1_rep	CDS	41915068	41915615	.	+	2	Parent=Os01t0952000-02
Chr01	irgsp1_rep	three_prime_UTR	41915616	41915921	.	+	.	Parent=Os01t0952000-02
Chr01	irgsp1_rep	mRNA	41917701	41919058	.	+	.	ID=Os01t0952100-00;Name=Os01t0952100-00;Locus_id=Os01g0952100;CGSNL Gene Symbol=GLP1-5;CGSNL Gene Name=GERMIN-LIKE PROTEIN 1-5;Oryzabase Gene Symbol Synonym(s)=OsGLP1-5%2C OsGLP1-4%2C GLP1-4;Oryzabase Gene Name Synonym(s)=Germin-like protein 1-5;Note=Similar to Germin-like protein subfamily 2 member 4 precursor.;Transcript_evidence=CT835013 (DDBJ%2C Best hit);ORF_evidence=Q942A8 (UniProt);GO=Cellular Component: apoplast (GO:0048046),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),Germin%2C manganese binding site (IPR019780);Oryzabase=21418;TENOR=Os01t0952100-00;KEGG=Os01t0952100-00
Chr01	irgsp1_rep	five_prime_UTR	41917701	41917865	.	+	.	Parent=Os01t0952100-00
Chr01	irgsp1_rep	CDS	41917866	41918004	.	+	0	Parent=Os01t0952100-00
Chr01	irgsp1_rep	CDS	41918291	41918859	.	+	2	Parent=Os01t0952100-00
Chr01	irgsp1_rep	three_prime_UTR	41918860	41919058	.	+	.	Parent=Os01t0952100-00
Chr01	irgsp1_rep	mRNA	41919630	41924980	.	+	.	ID=Os01t0952200-01;Name=Os01t0952200-01;Locus_id=Os01g0952200;Oryzabase Gene Symbol Synonym(s)=OsFbox058%2C OsFbox58%2C Os_F0591%2C DLN37%2C OsDLN37;Oryzabase Gene Name Synonym(s)=F-box protein 58%2C DLN repressor 37%2C DLN motif protein 37;Note=DNA/RNA helicase%2C C-terminal domain containing protein.;Transcript_evidence=AK122134 (DDBJ%2C Best hit);ORF_evidence=XP_002303924.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: helicase activity (GO:0004386),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: zinc ion binding (GO:0008270);InterPro=SNF2-related (IPR000330),Helicase%2C C-terminal (IPR001650),F-box domain%2C cyclin-like (IPR001810),Zinc finger%2C CW-type (IPR011124),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),DEAD-like helicase (IPR014001),Zinc finger%2C RING-type%2C conserved site (IPR017907);NIAS_FLcDNA=J033133G07;Oryzabase=16856;Expression=AK122134;TENOR=Os01t0952200-01;KEGG=Os01t0952200-01
Chr01	irgsp1_rep	five_prime_UTR	41919630	41919847	.	+	.	Parent=Os01t0952200-01
Chr01	irgsp1_rep	CDS	41919848	41920293	.	+	0	Parent=Os01t0952200-01
Chr01	irgsp1_rep	CDS	41920867	41923389	.	+	1	Parent=Os01t0952200-01
Chr01	irgsp1_rep	CDS	41923477	41923690	.	+	1	Parent=Os01t0952200-01
Chr01	irgsp1_rep	CDS	41923784	41924035	.	+	0	Parent=Os01t0952200-01
Chr01	irgsp1_rep	CDS	41924110	41924169	.	+	0	Parent=Os01t0952200-01
Chr01	irgsp1_rep	CDS	41924287	41924417	.	+	0	Parent=Os01t0952200-01
Chr01	irgsp1_rep	CDS	41924539	41924653	.	+	1	Parent=Os01t0952200-01
Chr01	irgsp1_rep	CDS	41924725	41924880	.	+	0	Parent=Os01t0952200-01
Chr01	irgsp1_rep	three_prime_UTR	41924881	41924980	.	+	.	Parent=Os01t0952200-01
Chr01	irgsp1_rep	mRNA	41920981	41925302	.	+	.	ID=Os01t0952200-02;Name=Os01t0952200-02;Locus_id=Os01g0952200;Oryzabase Gene Symbol Synonym(s)=OsFbox058%2C OsFbox58%2C Os_F0591%2C DLN37%2C OsDLN37;Oryzabase Gene Name Synonym(s)=F-box protein 58%2C DLN repressor 37%2C DLN motif protein 37;Note=Similar to Chromatin remodeling complex subunit.;Transcript_evidence=AK069717 (DDBJ%2C Best hit);ORF_evidence=XP_002303924.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: helicase activity (GO:0004386),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: zinc ion binding (GO:0008270);InterPro=SNF2-related (IPR000330),Helicase%2C C-terminal (IPR001650),F-box domain%2C cyclin-like (IPR001810),Zinc finger%2C CW-type (IPR011124),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),DEAD-like helicase (IPR014001),Zinc finger%2C RING-type%2C conserved site (IPR017907);NIAS_FLcDNA=J023034D08;Oryzabase=16856;Expression=AK069717;TENOR=Os01t0952200-02;KEGG=Os01t0952200-02
Chr01	irgsp1_rep	five_prime_UTR	41920981	41920981	.	+	.	Parent=Os01t0952200-02
Chr01	irgsp1_rep	CDS	41920982	41923389	.	+	0	Parent=Os01t0952200-02
Chr01	irgsp1_rep	CDS	41923477	41923690	.	+	1	Parent=Os01t0952200-02
Chr01	irgsp1_rep	CDS	41923784	41924035	.	+	0	Parent=Os01t0952200-02
Chr01	irgsp1_rep	CDS	41924110	41924169	.	+	0	Parent=Os01t0952200-02
Chr01	irgsp1_rep	CDS	41924287	41924417	.	+	0	Parent=Os01t0952200-02
Chr01	irgsp1_rep	CDS	41924539	41924653	.	+	1	Parent=Os01t0952200-02
Chr01	irgsp1_rep	CDS	41924725	41924880	.	+	0	Parent=Os01t0952200-02
Chr01	irgsp1_rep	three_prime_UTR	41924881	41925302	.	+	.	Parent=Os01t0952200-02
Chr01	irgsp1_rep	mRNA	41925865	41932899	.	-	.	ID=Os01t0952300-00;Name=Os01t0952300-00;Locus_id=Os01g0952300;Note=Similar to Ran GTPase binding / Chromatin binding / zinc ion binding.;Transcript_evidence=AK333491 (DDBJ);ORF_evidence=NP_197443.3 (RefSeq);GO=Biological Process: cortical protein anchoring (GO:0032065),Cellular Component: cell cortex (GO:0005938),Molecular Function: protein binding (GO:0005515),Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C FYVE-type (IPR000306),Regulator of Chromosome condensation%2C RCC1 (IPR000408),Regulator of Chromosome condensation/beta-lactamase-inhibitor protein II (IPR009091),Zinc finger%2C FYVE/PHD-type (IPR011011),Pleckstrin homology-type (IPR011993),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Brevis radix-like domain (IPR013591),Zinc finger%2C FYVE-related (IPR017455),Pleckstrin homology domain%2C Mcp5-type (IPR024774);TENOR=Os01t0952300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	41932533	41932899	.	-	.	Parent=Os01t0952300-00
Chr01	irgsp1_rep	CDS	41932464	41932532	.	-	0	Parent=Os01t0952300-00
Chr01	irgsp1_rep	CDS	41931148	41931234	.	-	0	Parent=Os01t0952300-00
Chr01	irgsp1_rep	CDS	41930966	41931055	.	-	0	Parent=Os01t0952300-00
Chr01	irgsp1_rep	CDS	41930129	41930209	.	-	0	Parent=Os01t0952300-00
Chr01	irgsp1_rep	CDS	41929791	41929985	.	-	0	Parent=Os01t0952300-00
Chr01	irgsp1_rep	CDS	41927307	41929430	.	-	0	Parent=Os01t0952300-00
Chr01	irgsp1_rep	CDS	41926705	41926878	.	-	0	Parent=Os01t0952300-00
Chr01	irgsp1_rep	CDS	41925865	41926476	.	-	0	Parent=Os01t0952300-00
Chr01	irgsp1_rep	mRNA	41948952	41952388	.	+	.	ID=Os01t0952500-01;Name=Os01t0952500-01;Locus_id=Os01g0952500;RAP-DB Gene Symbol Synonym(s)=RR4%2C rr4%2C OsRR4%2C Rra3%2C OsRRA3;RAP-DB Gene Name Synonym(s)=A-TYPE RESPONSE REGULATOR 4%2C A-TYPE response regulator 4%2C Type A response regulator 4%2C A-type RR 3;CGSNL Gene Symbol=RR4;CGSNL Gene Name=A-TYPE RESPONSE REGULATOR 4;Oryzabase Gene Symbol Synonym(s)=rr4%2C OsRR4%2C Rra3%2C OsRRA3;Oryzabase Gene Name Synonym(s)=A-TYPE response regulator 4%2C Type A response regulator 4%2C A-type RR 3;Note=A-type response regulator%2C Cytokinin signaling;Transcript_evidence=AK101721 (Genbank),AB249658 (Genbank),BR000258 (Genbank);ORF_evidence=Q942A1 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: two-component response regulator activity (GO:0000156);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),CheY-like superfamily (IPR011006);NIAS_FLcDNA=J033061A20;Manual Curation=April 20%2C 2010;Literature_PMID=16919402,16472405,17293362;Oryzabase=8161;Expression=AK101721;TENOR=Os01t0952500-01;KEGG=Os01t0952500-01
Chr01	irgsp1_rep	five_prime_UTR	41948952	41949360	.	+	.	Parent=Os01t0952500-01
Chr01	irgsp1_rep	CDS	41949361	41949466	.	+	0	Parent=Os01t0952500-01
Chr01	irgsp1_rep	CDS	41949601	41949704	.	+	2	Parent=Os01t0952500-01
Chr01	irgsp1_rep	CDS	41949821	41949898	.	+	0	Parent=Os01t0952500-01
Chr01	irgsp1_rep	CDS	41950020	41950090	.	+	0	Parent=Os01t0952500-01
Chr01	irgsp1_rep	CDS	41951552	41951891	.	+	1	Parent=Os01t0952500-01
Chr01	irgsp1_rep	three_prime_UTR	41951892	41952388	.	+	.	Parent=Os01t0952500-01
Chr01	irgsp1_rep	mRNA	41954683	41962785	.	+	.	ID=Os01t0952600-01;Name=Os01t0952600-01;Locus_id=Os01g0952600;Oryzabase Gene Name Synonym(s)=beta-lactase2%2C beta-lactase 2;Note=Similar to LacZ (Fragment).;Transcript_evidence=AK070047 (DDBJ%2C Best hit);ORF_evidence=NP_680128.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Cellular Component: beta-galactosidase complex (GO:0009341),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: beta-galactosidase activity (GO:0004565),Molecular Function: carbohydrate binding (GO:0030246),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 2%2C domain 5 (IPR004199),Glycoside hydrolase%2C family 2 (IPR006101),Glycoside hydrolase%2C family 2%2C immunoglobulin-like beta-sandwich (IPR006102),Glycoside hydrolase%2C family 2%2C TIM barrel (IPR006103),Glycoside hydrolase%2C family 2%2C N-terminal (IPR006104),Galactose-binding domain-like (IPR008979),Glycoside hydrolase-type carbohydrate-binding (IPR011013),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C family 2/20%2C immunoglobulin-like beta-sandwich domain (IPR013812),Glycoside hydrolase-type carbohydrate-binding%2C subgroup (IPR014718),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 2%2C conserved site (IPR023230),Glycoside hydrolase%2C family 2%2C active site (IPR023232);NIAS_FLcDNA=J023038J20;Oryzabase=13324;Expression=AK070047;TENOR=Os01t0952600-01;KEGG=Os01t0952600-01 (EC:3.2.1.23)
Chr01	irgsp1_rep	five_prime_UTR	41954683	41954789	.	+	.	Parent=Os01t0952600-01
Chr01	irgsp1_rep	five_prime_UTR	41954936	41954996	.	+	.	Parent=Os01t0952600-01
Chr01	irgsp1_rep	CDS	41954997	41955129	.	+	0	Parent=Os01t0952600-01
Chr01	irgsp1_rep	CDS	41955229	41955465	.	+	2	Parent=Os01t0952600-01
Chr01	irgsp1_rep	CDS	41955743	41955892	.	+	2	Parent=Os01t0952600-01
Chr01	irgsp1_rep	CDS	41956538	41956616	.	+	2	Parent=Os01t0952600-01
Chr01	irgsp1_rep	CDS	41957249	41957432	.	+	1	Parent=Os01t0952600-01
Chr01	irgsp1_rep	CDS	41957886	41957951	.	+	0	Parent=Os01t0952600-01
Chr01	irgsp1_rep	CDS	41958324	41958560	.	+	0	Parent=Os01t0952600-01
Chr01	irgsp1_rep	CDS	41958652	41958858	.	+	0	Parent=Os01t0952600-01
Chr01	irgsp1_rep	CDS	41958976	41959279	.	+	0	Parent=Os01t0952600-01
Chr01	irgsp1_rep	CDS	41959353	41959512	.	+	2	Parent=Os01t0952600-01
Chr01	irgsp1_rep	CDS	41959607	41959715	.	+	1	Parent=Os01t0952600-01
Chr01	irgsp1_rep	CDS	41960120	41960255	.	+	0	Parent=Os01t0952600-01
Chr01	irgsp1_rep	CDS	41960365	41960420	.	+	2	Parent=Os01t0952600-01
Chr01	irgsp1_rep	CDS	41960497	41960796	.	+	0	Parent=Os01t0952600-01
Chr01	irgsp1_rep	CDS	41960872	41960994	.	+	0	Parent=Os01t0952600-01
Chr01	irgsp1_rep	CDS	41961374	41962075	.	+	0	Parent=Os01t0952600-01
Chr01	irgsp1_rep	CDS	41962224	41962394	.	+	0	Parent=Os01t0952600-01
Chr01	irgsp1_rep	three_prime_UTR	41962395	41962785	.	+	.	Parent=Os01t0952600-01
Chr01	irgsp1_rep	mRNA	41955366	41962577	.	+	.	ID=Os01t0952600-02;Name=Os01t0952600-02;Locus_id=Os01g0952600;Oryzabase Gene Name Synonym(s)=beta-lactase2%2C beta-lactase 2;Note=Similar to glycoside hydrolase family 2 protein.;Transcript_evidence=AK067525 (DDBJ%2C Best hit);ORF_evidence=NP_680128.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Cellular Component: beta-galactosidase complex (GO:0009341),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: beta-galactosidase activity (GO:0004565),Molecular Function: carbohydrate binding (GO:0030246),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 2%2C domain 5 (IPR004199),Glycoside hydrolase%2C family 2 (IPR006101),Glycoside hydrolase%2C family 2%2C immunoglobulin-like beta-sandwich (IPR006102),Glycoside hydrolase%2C family 2%2C TIM barrel (IPR006103),Glycoside hydrolase%2C family 2%2C N-terminal (IPR006104),Galactose-binding domain-like (IPR008979),Glycoside hydrolase-type carbohydrate-binding (IPR011013),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C family 2/20%2C immunoglobulin-like beta-sandwich domain (IPR013812),Glycoside hydrolase-type carbohydrate-binding%2C subgroup (IPR014718),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 2%2C conserved site (IPR023230),Glycoside hydrolase%2C family 2%2C active site (IPR023232);NIAS_FLcDNA=J013108P17;Oryzabase=13324;Expression=AK067525;TENOR=Os01t0952600-02;KEGG=Os01t0952600-02 (EC:3.2.1.23)
Chr01	irgsp1_rep	CDS	41955366	41955465	.	+	0	Parent=Os01t0952600-02
Chr01	irgsp1_rep	CDS	41955743	41955892	.	+	2	Parent=Os01t0952600-02
Chr01	irgsp1_rep	CDS	41956538	41956616	.	+	2	Parent=Os01t0952600-02
Chr01	irgsp1_rep	CDS	41957249	41957432	.	+	1	Parent=Os01t0952600-02
Chr01	irgsp1_rep	CDS	41957886	41957951	.	+	0	Parent=Os01t0952600-02
Chr01	irgsp1_rep	CDS	41958324	41958560	.	+	0	Parent=Os01t0952600-02
Chr01	irgsp1_rep	CDS	41958652	41958858	.	+	0	Parent=Os01t0952600-02
Chr01	irgsp1_rep	CDS	41958976	41959279	.	+	0	Parent=Os01t0952600-02
Chr01	irgsp1_rep	CDS	41959353	41959512	.	+	2	Parent=Os01t0952600-02
Chr01	irgsp1_rep	CDS	41959607	41959715	.	+	1	Parent=Os01t0952600-02
Chr01	irgsp1_rep	CDS	41960120	41960255	.	+	0	Parent=Os01t0952600-02
Chr01	irgsp1_rep	CDS	41960365	41960420	.	+	2	Parent=Os01t0952600-02
Chr01	irgsp1_rep	CDS	41960497	41960796	.	+	0	Parent=Os01t0952600-02
Chr01	irgsp1_rep	CDS	41960872	41960994	.	+	0	Parent=Os01t0952600-02
Chr01	irgsp1_rep	CDS	41961374	41962075	.	+	0	Parent=Os01t0952600-02
Chr01	irgsp1_rep	CDS	41962224	41962394	.	+	0	Parent=Os01t0952600-02
Chr01	irgsp1_rep	three_prime_UTR	41962395	41962577	.	+	.	Parent=Os01t0952600-02
Chr01	irgsp1_rep	mRNA	41964153	41970108	.	+	.	ID=Os01t0952700-01;Name=Os01t0952700-01;Locus_id=Os01g0952700;Note=Metal-dependent hydrolase%2C composite domain containing protein.;Transcript_evidence=AK103457 (DDBJ%2C Best hit);ORF_evidence=XP_002878048.1 (RefSeq);GO=Biological Process: histidine catabolic process to glutamate and formamide (GO:0019556),Cellular Component: cytoplasm (GO:0005737),Molecular Function: hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds (GO:0016810),Molecular Function: hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds%2C in cyclic amides (GO:0016812);InterPro=Imidazolonepropionase (IPR005920),Metal-dependent hydrolase%2C composite domain (IPR011059),Amidohydrolase 3 (IPR013108);NIAS_FLcDNA=J033129L01;Expression=AK103457;TENOR=Os01t0952700-01;KEGG=Os01t0952700-01
Chr01	irgsp1_rep	five_prime_UTR	41964153	41964385	.	+	.	Parent=Os01t0952700-01
Chr01	irgsp1_rep	five_prime_UTR	41964528	41964578	.	+	.	Parent=Os01t0952700-01
Chr01	irgsp1_rep	CDS	41964579	41964663	.	+	0	Parent=Os01t0952700-01
Chr01	irgsp1_rep	CDS	41964764	41964903	.	+	2	Parent=Os01t0952700-01
Chr01	irgsp1_rep	CDS	41965101	41965202	.	+	0	Parent=Os01t0952700-01
Chr01	irgsp1_rep	CDS	41965332	41965404	.	+	0	Parent=Os01t0952700-01
Chr01	irgsp1_rep	CDS	41965938	41966044	.	+	2	Parent=Os01t0952700-01
Chr01	irgsp1_rep	CDS	41966117	41966240	.	+	0	Parent=Os01t0952700-01
Chr01	irgsp1_rep	CDS	41966645	41966839	.	+	2	Parent=Os01t0952700-01
Chr01	irgsp1_rep	CDS	41967156	41967241	.	+	2	Parent=Os01t0952700-01
Chr01	irgsp1_rep	CDS	41967336	41967443	.	+	0	Parent=Os01t0952700-01
Chr01	irgsp1_rep	CDS	41967812	41967907	.	+	0	Parent=Os01t0952700-01
Chr01	irgsp1_rep	CDS	41967988	41968086	.	+	0	Parent=Os01t0952700-01
Chr01	irgsp1_rep	CDS	41968203	41968277	.	+	0	Parent=Os01t0952700-01
Chr01	irgsp1_rep	CDS	41968681	41968812	.	+	0	Parent=Os01t0952700-01
Chr01	irgsp1_rep	CDS	41968893	41969008	.	+	0	Parent=Os01t0952700-01
Chr01	irgsp1_rep	CDS	41969576	41969750	.	+	1	Parent=Os01t0952700-01
Chr01	irgsp1_rep	three_prime_UTR	41969751	41970108	.	+	.	Parent=Os01t0952700-01
Chr01	irgsp1_rep	mRNA	41971444	41978093	.	-	.	ID=Os01t0952800-01;Name=Os01t0952800-01;Locus_id=Os01g0952800;RAP-DB Gene Symbol Synonym(s)=IRO2%2C OsbHLH056;RAP-DB Gene Name Synonym(s)=Iron-related bHLH transcription factor 2;Oryzabase Gene Symbol Synonym(s)=OsIRO2%2C IRO2%2C OsbHLH056%2C bHLH056%2C bHLH56%2C OsbHLH56;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 056%2C iron-related transcription factor 2;Note=Iron-related bHLH transcription factor 2%2C Tolerance to Fe deficiency%2C Regulation of Fe uptake from soil%2C Fe transport during germination%2C Fe translocation to grain during seed maturation;Transcript_evidence=AK073385;ORF_evidence=Q0JFZ0;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Helix-loop-helix DNA-binding domain superfamily (IPR036638),Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);NIAS_FLcDNA=J033041D19;Manual Curation=October 7%2C 2019;Literature_PMID=31574173,21331630,17559517;Oryzabase=9483;TENOR=Os01t0952800-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=nucleus (GO:0005634) [co-expressed with OsbHLH156]
Chr01	irgsp1_rep	five_prime_UTR	41977890	41978093	.	-	.	Parent=Os01t0952800-01
Chr01	irgsp1_rep	CDS	41977587	41977889	.	-	0	Parent=Os01t0952800-01
Chr01	irgsp1_rep	CDS	41977140	41977496	.	-	0	Parent=Os01t0952800-01
Chr01	irgsp1_rep	CDS	41975712	41975795	.	-	0	Parent=Os01t0952800-01
Chr01	irgsp1_rep	three_prime_UTR	41975651	41975711	.	-	.	Parent=Os01t0952800-01
Chr01	irgsp1_rep	three_prime_UTR	41971444	41972812	.	-	.	Parent=Os01t0952800-01
Chr01	irgsp1_rep	mRNA	41971905	41972676	.	-	.	ID=Os01t0952800-02;Name=Os01t0952800-02;Locus_id=Os01g0952800;CGSNL Gene Symbol=IRO2;CGSNL Gene Name=IRON-RELATED TRANSCRIPTION FACTOR 2;Oryzabase Gene Symbol Synonym(s)=OsIRO2%2C OsbHLH056%2C bHLH056%2C bHLH56%2C OsbHLH56;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 056%2C iron-related transcription factor 2;Note=Conserved hypothetical protein.;Transcript_evidence=AK108392 (DDBJ%2C Best hit);ORF_evidence=Q5JKZ7 (UniProt);NIAS_FLcDNA=002-142-F06;Oryzabase=9483;TENOR=Os01t0952800-02;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	41972623	41972676	.	-	.	Parent=Os01t0952800-02
Chr01	irgsp1_rep	CDS	41972080	41972622	.	-	0	Parent=Os01t0952800-02
Chr01	irgsp1_rep	three_prime_UTR	41971905	41972079	.	-	.	Parent=Os01t0952800-02
Chr01	irgsp1_rep	mRNA	41972004	41973019	.	+	.	ID=Os01t0952900-01;Name=Os01t0952900-01;Locus_id=Os01g0952900;Note=Conserved hypothetical protein.;Transcript_evidence=AK104991 (DDBJ%2C Best hit),AK069958 (DDBJ%2C Best hit);ORF_evidence=A2WZ59 (UniProt);NIAS_FLcDNA=001-002-E02,J023035P08;TENOR=Os01t0952900-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	41972004	41972088	.	+	.	Parent=Os01t0952900-01
Chr01	irgsp1_rep	CDS	41972089	41972745	.	+	0	Parent=Os01t0952900-01
Chr01	irgsp1_rep	three_prime_UTR	41972746	41973019	.	+	.	Parent=Os01t0952900-01
Chr01	irgsp1_rep	mRNA	41981690	41984377	.	-	.	ID=Os01t0953000-01;Name=Os01t0953000-01;Locus_id=Os01g0953000;Note=Hypothetical protein.;Transcript_evidence=AK100594 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023106M03;TENOR=Os01t0953000-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	41983139	41984377	.	-	.	Parent=Os01t0953000-01
Chr01	irgsp1_rep	CDS	41982182	41983138	.	-	0	Parent=Os01t0953000-01
Chr01	irgsp1_rep	three_prime_UTR	41981690	41982181	.	-	.	Parent=Os01t0953000-01
Chr01	irgsp1_rep	mRNA	41982181	41984495	.	+	.	ID=Os01t0953100-01;Name=Os01t0953100-01;Locus_id=Os01g0953100;Note=Protein of unknown function DUF594 family protein.;Transcript_evidence=AK064981 (DDBJ%2C Best hit);ORF_evidence=B8A9L3 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);NIAS_FLcDNA=J013001C07;Expression=AK064981;TENOR=Os01t0953100-01;KEGG=Os01t0953100-01
Chr01	irgsp1_rep	five_prime_UTR	41982181	41982268	.	+	.	Parent=Os01t0953100-01
Chr01	irgsp1_rep	CDS	41982269	41984407	.	+	0	Parent=Os01t0953100-01
Chr01	irgsp1_rep	three_prime_UTR	41984408	41984495	.	+	.	Parent=Os01t0953100-01
Chr01	irgsp1_rep	mRNA	41982224	41985044	.	+	.	ID=Os01t0953100-02;Name=Os01t0953100-02;Locus_id=Os01g0953100;Note=Protein of unknown function DUF594 family protein.;Transcript_evidence=AK068882 (DDBJ%2C Best hit);ORF_evidence=B8A9L3 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);NIAS_FLcDNA=J013169K14;Expression=AK068882;TENOR=Os01t0953100-02;KEGG=Os01t0953100-02
Chr01	irgsp1_rep	five_prime_UTR	41982224	41982268	.	+	.	Parent=Os01t0953100-02
Chr01	irgsp1_rep	CDS	41982269	41984407	.	+	0	Parent=Os01t0953100-02
Chr01	irgsp1_rep	three_prime_UTR	41984408	41985044	.	+	.	Parent=Os01t0953100-02
Chr01	irgsp1_rep	mRNA	41997484	42000340	.	+	.	ID=Os01t0953400-01;Name=Os01t0953400-01;Locus_id=Os01g0953400;Note=NB-ARC domain containing protein.;Transcript_evidence=AK101164 (DDBJ%2C Best hit),AK107454 (DDBJ%2C Best hit);ORF_evidence=A3A1L5 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);NIAS_FLcDNA=J033028C06,002-128-C08;Expression=AK101164;TENOR=Os01t0953400-01;KEGG=Os01t0953400-01
Chr01	irgsp1_rep	five_prime_UTR	41997484	41997593	.	+	.	Parent=Os01t0953400-01
Chr01	irgsp1_rep	five_prime_UTR	41997700	41997891	.	+	.	Parent=Os01t0953400-01
Chr01	irgsp1_rep	CDS	41997892	41999694	.	+	0	Parent=Os01t0953400-01
Chr01	irgsp1_rep	three_prime_UTR	41999695	42000340	.	+	.	Parent=Os01t0953400-01
Chr01	irgsp1_rep	mRNA	42000362	42002680	.	-	.	ID=Os01t0953500-01;Name=Os01t0953500-01;Locus_id=Os01g0953500;Note=C2 calcium-dependent membrane targeting domain containing protein.;Transcript_evidence=AK058479 (DDBJ%2C Best hit);ORF_evidence=Q941Z2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium/lipid-binding domain%2C CaLB (IPR008973);NIAS_FLcDNA=001-016-C08;Expression=AK058479;TENOR=Os01t0953500-01;KEGG=Os01t0953500-01
Chr01	irgsp1_rep	five_prime_UTR	42002645	42002680	.	-	.	Parent=Os01t0953500-01
Chr01	irgsp1_rep	five_prime_UTR	42002494	42002550	.	-	.	Parent=Os01t0953500-01
Chr01	irgsp1_rep	CDS	42001300	42002493	.	-	0	Parent=Os01t0953500-01
Chr01	irgsp1_rep	three_prime_UTR	42001230	42001299	.	-	.	Parent=Os01t0953500-01
Chr01	irgsp1_rep	three_prime_UTR	42000362	42000690	.	-	.	Parent=Os01t0953500-01
Chr01	irgsp1_rep	mRNA	42006932	42009785	.	-	.	ID=Os01t0953600-01;Name=Os01t0953600-01;Locus_id=Os01g0953600;Note=NADPH-dependent FMN reductase family protein.;Transcript_evidence=AK071823 (DDBJ%2C Best hit);ORF_evidence=B6T653 (UniProt);InterPro=NADPH-dependent FMN reductase (IPR005025);NIAS_FLcDNA=J023120I15;Expression=AK071823;TENOR=Os01t0953600-01;KEGG=Os01t0953600-01
Chr01	irgsp1_rep	five_prime_UTR	42009655	42009785	.	-	.	Parent=Os01t0953600-01
Chr01	irgsp1_rep	CDS	42009561	42009654	.	-	0	Parent=Os01t0953600-01
Chr01	irgsp1_rep	CDS	42009245	42009439	.	-	2	Parent=Os01t0953600-01
Chr01	irgsp1_rep	CDS	42007162	42007466	.	-	2	Parent=Os01t0953600-01
Chr01	irgsp1_rep	three_prime_UTR	42006932	42007161	.	-	.	Parent=Os01t0953600-01
Chr01	irgsp1_rep	mRNA	42003971	42009747	.	-	.	ID=Os01t0953600-02;Name=Os01t0953600-02;Locus_id=Os01g0953600;Note=NADPH-dependent FMN reductase family protein.;Transcript_evidence=AK100697 (DDBJ%2C Best hit);ORF_evidence=B6T653 (UniProt);InterPro=NADPH-dependent FMN reductase (IPR005025);NIAS_FLcDNA=J023114J09;Expression=AK100697;TENOR=Os01t0953600-02;KEGG=Os01t0953600-02
Chr01	irgsp1_rep	five_prime_UTR	42009655	42009747	.	-	.	Parent=Os01t0953600-02
Chr01	irgsp1_rep	CDS	42009561	42009654	.	-	0	Parent=Os01t0953600-02
Chr01	irgsp1_rep	CDS	42009245	42009439	.	-	2	Parent=Os01t0953600-02
Chr01	irgsp1_rep	CDS	42007162	42007466	.	-	2	Parent=Os01t0953600-02
Chr01	irgsp1_rep	three_prime_UTR	42005540	42007161	.	-	.	Parent=Os01t0953600-02
Chr01	irgsp1_rep	three_prime_UTR	42003971	42004675	.	-	.	Parent=Os01t0953600-02
Chr01	irgsp1_rep	mRNA	42012784	42013581	.	+	.	ID=Os01t0953801-00;Name=Os01t0953801-00;Locus_id=Os01g0953801;Note=Domain of unknown function DUF296 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001172746.1 (RefSeq);InterPro=Domain of unknown function DUF296 (IPR005175),Predicted AT-hook DNA-binding (IPR014476);TENOR=Os01t0953801-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	42012784	42013581	.	+	0	Parent=Os01t0953801-00
Chr01	irgsp1_rep	mRNA	42018073	42019444	.	+	.	ID=Os01t0954000-01;Name=Os01t0954000-01;Locus_id=Os01g0954000;Note=NADPH-dependent FMN reductase family protein.;Transcript_evidence=AK062729 (DDBJ%2C Best hit);ORF_evidence=B6TL26 (UniProt);InterPro=NADPH-dependent FMN reductase (IPR005025);NIAS_FLcDNA=001-106-E03;Expression=AK062729;TENOR=Os01t0954000-01;KEGG=Os01t0954000-01
Chr01	irgsp1_rep	five_prime_UTR	42018073	42018100	.	+	.	Parent=Os01t0954000-01
Chr01	irgsp1_rep	CDS	42018101	42018194	.	+	0	Parent=Os01t0954000-01
Chr01	irgsp1_rep	CDS	42018301	42018492	.	+	2	Parent=Os01t0954000-01
Chr01	irgsp1_rep	CDS	42018994	42019319	.	+	2	Parent=Os01t0954000-01
Chr01	irgsp1_rep	three_prime_UTR	42019320	42019444	.	+	.	Parent=Os01t0954000-01
Chr01	irgsp1_rep	mRNA	42020860	42021464	.	-	.	ID=Os01t0954100-01;Name=Os01t0954100-01;Locus_id=Os01g0954100;Note=Conserved hypothetical protein.;Transcript_evidence=AK062680 (DDBJ%2C Best hit);ORF_evidence=A2WZ71 (UniProt);NIAS_FLcDNA=001-105-H04;Expression=AK062680;TENOR=Os01t0954100-01;KEGG=Os01t0954100-01
Chr01	irgsp1_rep	five_prime_UTR	42021373	42021464	.	-	.	Parent=Os01t0954100-01
Chr01	irgsp1_rep	CDS	42021109	42021372	.	-	0	Parent=Os01t0954100-01
Chr01	irgsp1_rep	three_prime_UTR	42020860	42021108	.	-	.	Parent=Os01t0954100-01
Chr01	irgsp1_rep	mRNA	42025709	42027877	.	+	.	ID=Os01t0954400-01;Name=Os01t0954400-01;Locus_id=Os01g0954400;RAP-DB Gene Symbol Synonym(s)=OsPIE1;RAP-DB Gene Name Synonym(s)=Pi-starvation-induced E3 ligase 1;CGSNL Gene Symbol=PIE1;CGSNL Gene Name=PI-STARVATION-INDUCED E3 LIGASE 1;Oryzabase Gene Symbol Synonym(s)=OsRFP%2C OsPIE1;Oryzabase Gene Name Synonym(s)=RING finger protein%2C Pi-starvation-induced E3 ligase 1;Note=Pi-starvation induced RING-type E3 ligase%2C Pi homeostasis;Transcript_evidence=AK104335,AK065709;ORF_evidence=Q941Y7;InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING-type%2C conserved site (IPR017907);NIAS_FLcDNA=001-033-A01,J013039J02;Manual Curation=October 24%2C 2018;Literature_PMID=30329110;Oryzabase=21162;Expression=AK104335;TENOR=Os01t0954400-01;KEGG=Os01t0954400-01;Subcellular location=nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	42025709	42025802	.	+	.	Parent=Os01t0954400-01
Chr01	irgsp1_rep	CDS	42025803	42025907	.	+	0	Parent=Os01t0954400-01
Chr01	irgsp1_rep	CDS	42026012	42026130	.	+	0	Parent=Os01t0954400-01
Chr01	irgsp1_rep	CDS	42026845	42026949	.	+	1	Parent=Os01t0954400-01
Chr01	irgsp1_rep	CDS	42027033	42027546	.	+	1	Parent=Os01t0954400-01
Chr01	irgsp1_rep	three_prime_UTR	42027547	42027877	.	+	.	Parent=Os01t0954400-01
Chr01	irgsp1_rep	mRNA	42037177	42039335	.	-	.	ID=Os01t0954500-01;Name=Os01t0954500-01;Locus_id=Os01g0954500;Note=Protein of unknown function DUF702 family protein.;Transcript_evidence=AK102444 (DDBJ%2C Best hit);ORF_evidence=F1DK23 (UniProt);InterPro=Zinc finger%2C lateral root primordium type 1 (IPR006510),Lateral Root Primordium type 1%2C C-terminal (IPR006511),Protein of unknown function DUF702 (IPR007818);NIAS_FLcDNA=J033093N15;Expression=AK102444;TENOR=Os01t0954500-01;KEGG=Os01t0954500-01
Chr01	irgsp1_rep	five_prime_UTR	42039135	42039335	.	-	.	Parent=Os01t0954500-01
Chr01	irgsp1_rep	five_prime_UTR	42038610	42038842	.	-	.	Parent=Os01t0954500-01
Chr01	irgsp1_rep	CDS	42037973	42038609	.	-	0	Parent=Os01t0954500-01
Chr01	irgsp1_rep	CDS	42037500	42037885	.	-	2	Parent=Os01t0954500-01
Chr01	irgsp1_rep	three_prime_UTR	42037177	42037499	.	-	.	Parent=Os01t0954500-01
Chr01	irgsp1_rep	mRNA	42058994	42060584	.	-	.	ID=Os01t0954900-01;Name=Os01t0954900-01;Locus_id=Os01g0954900;Note=Similar to Nucleoid DNA-binding-like protein.;Transcript_evidence=AK110957 (DDBJ%2C Best hit);ORF_evidence=B6TDX6 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=002-174-A08;Expression=AK110957;TENOR=Os01t0954900-01;KEGG=Os01t0954900-01
Chr01	irgsp1_rep	five_prime_UTR	42060533	42060584	.	-	.	Parent=Os01t0954900-01
Chr01	irgsp1_rep	CDS	42059195	42060532	.	-	0	Parent=Os01t0954900-01
Chr01	irgsp1_rep	three_prime_UTR	42058994	42059194	.	-	.	Parent=Os01t0954900-01
Chr01	irgsp1_rep	mRNA	42063261	42067784	.	-	.	ID=Os01t0955000-02;Name=Os01t0955000-02;Locus_id=Os01g0955000;CGSNL Gene Symbol=NPC2;CGSNL Gene Name=NON-SPECIFIC PHOSPHOLIPASE C2;Oryzabase Gene Symbol Synonym(s)=OsNPC2;Oryzabase Gene Name Synonym(s)=Non-specific phospholipase C2;Note=Phosphoesterase family protein.;Transcript_evidence=AK101291 (DDBJ%2C Best hit),AK119633 (DDBJ%2C Best hit);ORF_evidence=XP_002880842.1 (RefSeq);NIAS_FLcDNA=J033033G16,002-130-E12;Oryzabase=21049;Expression=AK101291;TENOR=Os01t0955000-02;KEGG=Os01t0955000-02 (EC:3.1.4.3)
Chr01	irgsp1_rep	five_prime_UTR	42067705	42067784	.	-	.	Parent=Os01t0955000-02
Chr01	irgsp1_rep	CDS	42067148	42067704	.	-	0	Parent=Os01t0955000-02
Chr01	irgsp1_rep	CDS	42064201	42064718	.	-	1	Parent=Os01t0955000-02
Chr01	irgsp1_rep	CDS	42063904	42064083	.	-	2	Parent=Os01t0955000-02
Chr01	irgsp1_rep	CDS	42063489	42063796	.	-	2	Parent=Os01t0955000-02
Chr01	irgsp1_rep	three_prime_UTR	42063261	42063488	.	-	.	Parent=Os01t0955000-02
Chr01	irgsp1_rep	mRNA	42066281	42067778	.	-	.	ID=Os01t0955000-03;Name=Os01t0955000-03;Locus_id=Os01g0955000;CGSNL Gene Symbol=NPC2;CGSNL Gene Name=NON-SPECIFIC PHOSPHOLIPASE C2;Oryzabase Gene Symbol Synonym(s)=OsNPC2;Oryzabase Gene Name Synonym(s)=Non-specific phospholipase C2;Note=Similar to phosphoesterase family protein.;Transcript_evidence=AK111280 (DDBJ%2C Best hit);ORF_evidence=XP_002880842.1 (RefSeq);GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Phosphoesterase (IPR007312);NIAS_FLcDNA=002-180-H03;Oryzabase=21049;Expression=AK111280;TENOR=Os01t0955000-03;KEGG=Os01t0955000-03 (EC:3.1.4.3)
Chr01	irgsp1_rep	five_prime_UTR	42067705	42067778	.	-	.	Parent=Os01t0955000-03
Chr01	irgsp1_rep	CDS	42067129	42067704	.	-	0	Parent=Os01t0955000-03
Chr01	irgsp1_rep	three_prime_UTR	42066281	42067128	.	-	.	Parent=Os01t0955000-03
Chr01	irgsp1_rep	mRNA	42072166	42073103	.	-	.	ID=Os01t0955050-00;Name=Os01t0955050-00;Locus_id=Os01g0955050;Note=Hypothetical gene.;Transcript_evidence=CT834864 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os01t0955050-00;KEGG=Os01t0955050-00
Chr01	irgsp1_rep	five_prime_UTR	42072534	42073103	.	-	.	Parent=Os01t0955050-00
Chr01	irgsp1_rep	CDS	42072255	42072533	.	-	0	Parent=Os01t0955050-00
Chr01	irgsp1_rep	three_prime_UTR	42072166	42072254	.	-	.	Parent=Os01t0955050-00
Chr01	irgsp1_rep	mRNA	42074192	42074866	.	-	.	ID=Os01t0955100-01;Name=Os01t0955100-01;Locus_id=Os01g0955100;RAP-DB Gene Symbol Synonym(s)=OsMSR2;RAP-DB Gene Name Synonym(s)=Multi-Stress-Responsive gene 2;CGSNL Gene Symbol=CML31;CGSNL Gene Name=CALMODULIN-LIKE PROTEIN 31;Oryzabase Gene Symbol Synonym(s)=OsCML31%2C OsMSR2%2C MSR2;Oryzabase Gene Name Synonym(s)=calmodulin-like protein 31%2C multi-stress-responsive gene 2;Note=Calmodulin-like protein%2C Drought and salt tolerance;Transcript_evidence=AK062671;ORF_evidence=Q8RYK0;GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand domain pair (IPR011992),EF-hand domain (IPR002048),EF-Hand 1%2C calcium-binding site (IPR018247);NIAS_FLcDNA=001-105-G04;Manual Curation=September 15%2C 2020;Literature_PMID=21359958;Oryzabase=10515;TENOR=Os01t0955100-01;Subcellular location=cytoplasm (GO:0005737)
Chr01	irgsp1_rep	five_prime_UTR	42074850	42074866	.	-	.	Parent=Os01t0955100-01
Chr01	irgsp1_rep	CDS	42074394	42074849	.	-	0	Parent=Os01t0955100-01
Chr01	irgsp1_rep	three_prime_UTR	42074192	42074393	.	-	.	Parent=Os01t0955100-01
Chr01	irgsp1_rep	mRNA	42078682	42079137	.	-	.	ID=Os01t0955400-00;Name=Os01t0955400-00;Locus_id=Os01g0955400;CGSNL Gene Symbol=CML23;CGSNL Gene Name=CALMODULIN-LIKE PROTEIN 23;Oryzabase Gene Symbol Synonym(s)=OsCML23;Oryzabase Gene Name Synonym(s)=calmodulin-like protein 23;Note=Similar to cDNA clone:001-105-G04%2C full insert sequence.;Transcript_evidence=Q8RYJ9 (UniProt);ORF_evidence=Q8RYJ9 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);Oryzabase=9331;TENOR=Os01t0955400-00
Chr01	irgsp1_rep	CDS	42078682	42079137	.	-	0	Parent=Os01t0955400-00
Chr01	irgsp1_rep	mRNA	42080116	42080556	.	+	.	ID=Os01t0955500-00;Name=Os01t0955500-00;Locus_id=Os01g0955500;CGSNL Gene Symbol=CML19;CGSNL Gene Name=CALMODULIN-LIKE PROTEIN 19;Oryzabase Gene Symbol Synonym(s)=OsCML19;Oryzabase Gene Name Synonym(s)=calmodulin-like protein 19;Note=Putative calcium-binding protein CML19.;Transcript_evidence=Q8RYJ8 (UniProt);ORF_evidence=Q8RYJ8 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);Oryzabase=9330;TENOR=Os01t0955500-00
Chr01	irgsp1_rep	CDS	42080116	42080556	.	+	0	Parent=Os01t0955500-00
Chr01	irgsp1_rep	mRNA	42084071	42085072	.	-	.	ID=Os01t0955550-01;Name=Os01t0955550-01;Locus_id=Os01g0955550;Note=Hypothetical conserved gene.;Transcript_evidence=AK241060 (DDBJ%2C Best hit);ORF_evidence=B9EWI3 (UniProt);NIAS_FLcDNA=J065064N07;TENOR=Os01t0955550-01;KEGG=Os01t0955550-01
Chr01	irgsp1_rep	five_prime_UTR	42084988	42085072	.	-	.	Parent=Os01t0955550-01
Chr01	irgsp1_rep	CDS	42084908	42084987	.	-	0	Parent=Os01t0955550-01
Chr01	irgsp1_rep	CDS	42084547	42084567	.	-	1	Parent=Os01t0955550-01
Chr01	irgsp1_rep	CDS	42084187	42084427	.	-	1	Parent=Os01t0955550-01
Chr01	irgsp1_rep	three_prime_UTR	42084071	42084186	.	-	.	Parent=Os01t0955550-01
Chr01	irgsp1_rep	mRNA	42084169	42085061	.	+	.	ID=Os01t0955600-00;Name=Os01t0955600-00;Locus_id=Os01g0955600;Note=Conserved hypothetical protein.;Transcript_evidence=AK371661 (DDBJ);ORF_evidence=Q5JJT2 (UniProt);TENOR=Os01t0955600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	42084169	42084410	.	+	0	Parent=Os01t0955600-00
Chr01	irgsp1_rep	CDS	42084513	42084585	.	+	1	Parent=Os01t0955600-00
Chr01	irgsp1_rep	CDS	42084791	42085042	.	+	0	Parent=Os01t0955600-00
Chr01	irgsp1_rep	three_prime_UTR	42085043	42085061	.	+	.	Parent=Os01t0955600-00
Chr01	irgsp1_rep	mRNA	42086484	42095424	.	+	.	ID=Os01t0955700-01;Name=Os01t0955700-01;Locus_id=Os01g0955700;RAP-DB Gene Symbol Synonym(s)=OsCLT1;RAP-DB Gene Name Synonym(s)=CRT-like transporter 1;Oryzabase Gene Symbol Synonym(s)=OsCLT1%2C CLT1;Oryzabase Gene Name Synonym(s)=CRT-like transporter 1;Note=CRT-like transporter%2C Glutathione homeostasis%2C Arsenic tolerance;Transcript_evidence=AK241714;ORF_evidence=A0A0P0VCX8;InterPro=Chloroquine-resistance transporter-like (IPR013936);NIAS_FLcDNA=J065197L03;Manual Curation=April 11%2C 2016;Literature_PMID=26918637;Oryzabase=21045;TENOR=Os01t0955700-01;KEGG=Os01t0955700-01
Chr01	irgsp1_rep	five_prime_UTR	42086484	42086633	.	+	.	Parent=Os01t0955700-01
Chr01	irgsp1_rep	CDS	42086634	42087040	.	+	0	Parent=Os01t0955700-01
Chr01	irgsp1_rep	CDS	42089235	42089380	.	+	1	Parent=Os01t0955700-01
Chr01	irgsp1_rep	CDS	42089668	42089705	.	+	2	Parent=Os01t0955700-01
Chr01	irgsp1_rep	CDS	42089791	42089906	.	+	0	Parent=Os01t0955700-01
Chr01	irgsp1_rep	CDS	42090554	42090653	.	+	1	Parent=Os01t0955700-01
Chr01	irgsp1_rep	CDS	42090744	42090779	.	+	0	Parent=Os01t0955700-01
Chr01	irgsp1_rep	CDS	42090942	42090992	.	+	0	Parent=Os01t0955700-01
Chr01	irgsp1_rep	CDS	42091072	42091195	.	+	0	Parent=Os01t0955700-01
Chr01	irgsp1_rep	CDS	42091481	42091606	.	+	2	Parent=Os01t0955700-01
Chr01	irgsp1_rep	CDS	42094578	42094753	.	+	2	Parent=Os01t0955700-01
Chr01	irgsp1_rep	three_prime_UTR	42094754	42095424	.	+	.	Parent=Os01t0955700-01
Chr01	irgsp1_rep	mRNA	42122517	42123788	.	-	.	ID=Os01t0956075-00;Name=Os01t0956075-00;Locus_id=Os01g0956075;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=CT834894 (DDBJ%2C Best hit);ORF_evidence=NP_001172750.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);TENOR=Os01t0956075-00;KEGG=Os01t0956075-00
Chr01	irgsp1_rep	five_prime_UTR	42123642	42123788	.	-	.	Parent=Os01t0956075-00
Chr01	irgsp1_rep	CDS	42122652	42123641	.	-	0	Parent=Os01t0956075-00
Chr01	irgsp1_rep	three_prime_UTR	42122517	42122651	.	-	.	Parent=Os01t0956075-00
Chr01	irgsp1_rep	mRNA	42128337	42130205	.	-	.	ID=Os01t0956200-01;Name=Os01t0956200-01;Locus_id=Os01g0956200;Note=Glycosyltransferase AER61%2C uncharacterized domain containing protein.;Transcript_evidence=AK068399 (DDBJ%2C Best hit),AK106051 (DDBJ%2C Best hit);ORF_evidence=NP_001147864.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyltransferase AER61%2C uncharacterised (IPR007657);NIAS_FLcDNA=J013149N20,001-206-F02;Oryzabase=15236;TENOR=Os01t0956200-01
Chr01	irgsp1_rep	five_prime_UTR	42130128	42130205	.	-	.	Parent=Os01t0956200-01
Chr01	irgsp1_rep	CDS	42128652	42130127	.	-	0	Parent=Os01t0956200-01
Chr01	irgsp1_rep	three_prime_UTR	42128337	42128651	.	-	.	Parent=Os01t0956200-01
Chr01	irgsp1_rep	mRNA	42128530	42130337	.	+	.	ID=Os01t0956300-01;Name=Os01t0956300-01;Locus_id=Os01g0956300;Note=Hypothetical protein.;Transcript_evidence=AK109878 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-149-C07;Expression=AK109878;TENOR=Os01t0956300-01;KEGG=Os01t0956300-01
Chr01	irgsp1_rep	five_prime_UTR	42128530	42129567	.	+	.	Parent=Os01t0956300-01
Chr01	irgsp1_rep	CDS	42129568	42129909	.	+	0	Parent=Os01t0956300-01
Chr01	irgsp1_rep	three_prime_UTR	42129910	42130337	.	+	.	Parent=Os01t0956300-01
Chr01	irgsp1_rep	mRNA	42138651	42143035	.	+	.	ID=Os01t0956500-01;Name=Os01t0956500-01;Locus_id=Os01g0956500;Note=Conserved hypothetical protein.;Transcript_evidence=AK072478 (DDBJ%2C Best hit);ORF_evidence=B9EWK6 (UniProt);NIAS_FLcDNA=J023126N13;Expression=AK072478;TENOR=Os01t0956500-01;KEGG=Os01t0956500-01
Chr01	irgsp1_rep	five_prime_UTR	42138651	42138723	.	+	.	Parent=Os01t0956500-01
Chr01	irgsp1_rep	CDS	42138724	42139071	.	+	0	Parent=Os01t0956500-01
Chr01	irgsp1_rep	CDS	42139171	42139356	.	+	0	Parent=Os01t0956500-01
Chr01	irgsp1_rep	CDS	42140885	42140986	.	+	0	Parent=Os01t0956500-01
Chr01	irgsp1_rep	CDS	42141066	42141122	.	+	0	Parent=Os01t0956500-01
Chr01	irgsp1_rep	CDS	42141204	42141299	.	+	0	Parent=Os01t0956500-01
Chr01	irgsp1_rep	CDS	42141377	42141469	.	+	0	Parent=Os01t0956500-01
Chr01	irgsp1_rep	CDS	42141586	42141705	.	+	0	Parent=Os01t0956500-01
Chr01	irgsp1_rep	CDS	42141796	42141828	.	+	0	Parent=Os01t0956500-01
Chr01	irgsp1_rep	CDS	42141907	42141957	.	+	0	Parent=Os01t0956500-01
Chr01	irgsp1_rep	CDS	42142593	42142671	.	+	0	Parent=Os01t0956500-01
Chr01	irgsp1_rep	CDS	42142770	42142795	.	+	2	Parent=Os01t0956500-01
Chr01	irgsp1_rep	three_prime_UTR	42142796	42143035	.	+	.	Parent=Os01t0956500-01
Chr01	irgsp1_rep	mRNA	42149782	42156852	.	+	.	ID=Os01t0956600-01;Name=Os01t0956600-01;Locus_id=Os01g0956600;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK102888 (DDBJ%2C Best hit);ORF_evidence=Q10S20 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=RNA recognition motif domain (IPR000504),Protein kinase-like domain (IPR011009),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033112L14;Expression=AK102888;TENOR=Os01t0956600-01;KEGG=Os01t0956600-01
Chr01	irgsp1_rep	five_prime_UTR	42149782	42149888	.	+	.	Parent=Os01t0956600-01
Chr01	irgsp1_rep	five_prime_UTR	42149978	42150060	.	+	.	Parent=Os01t0956600-01
Chr01	irgsp1_rep	five_prime_UTR	42152021	42152078	.	+	.	Parent=Os01t0956600-01
Chr01	irgsp1_rep	CDS	42152079	42152088	.	+	0	Parent=Os01t0956600-01
Chr01	irgsp1_rep	CDS	42152701	42153070	.	+	2	Parent=Os01t0956600-01
Chr01	irgsp1_rep	CDS	42153170	42153291	.	+	1	Parent=Os01t0956600-01
Chr01	irgsp1_rep	CDS	42153409	42153577	.	+	2	Parent=Os01t0956600-01
Chr01	irgsp1_rep	CDS	42153878	42154187	.	+	1	Parent=Os01t0956600-01
Chr01	irgsp1_rep	CDS	42154384	42154467	.	+	0	Parent=Os01t0956600-01
Chr01	irgsp1_rep	CDS	42154654	42154725	.	+	0	Parent=Os01t0956600-01
Chr01	irgsp1_rep	CDS	42155422	42155463	.	+	0	Parent=Os01t0956600-01
Chr01	irgsp1_rep	CDS	42155573	42155662	.	+	0	Parent=Os01t0956600-01
Chr01	irgsp1_rep	CDS	42155748	42155855	.	+	0	Parent=Os01t0956600-01
Chr01	irgsp1_rep	CDS	42155934	42156026	.	+	0	Parent=Os01t0956600-01
Chr01	irgsp1_rep	CDS	42156182	42156261	.	+	0	Parent=Os01t0956600-01
Chr01	irgsp1_rep	CDS	42156343	42156619	.	+	1	Parent=Os01t0956600-01
Chr01	irgsp1_rep	three_prime_UTR	42156620	42156852	.	+	.	Parent=Os01t0956600-01
Chr01	irgsp1_rep	mRNA	42162592	42166462	.	-	.	ID=Os01t0956700-01;Name=Os01t0956700-01;Locus_id=Os01g0956700;RAP-DB Gene Symbol Synonym(s)=LCD%2C OsLCD;RAP-DB Gene Name Synonym(s)=Low cadmium;CGSNL Gene Symbol=LCD;CGSNL Gene Name=LOW CADMIUM;Oryzabase Gene Symbol Synonym(s)=OsLCD;Oryzabase Gene Name Synonym(s)=Low cadmium%2C low Cd;Note=Cadmium tolerance and accumulation;Transcript_evidence=AK064171;ORF_evidence=Q5JK54;NIAS_FLcDNA=002-104-A04;Manual Curation=May 16%2C 2017;Literature_PMID=21908474;Oryzabase=22378;Expression=AK064171;TENOR=Os01t0956700-01;KEGG=Os01t0956700-01;Subcellular location=cytoplasm (GO:0005737), nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	42166272	42166462	.	-	.	Parent=Os01t0956700-01
Chr01	irgsp1_rep	five_prime_UTR	42165332	42165501	.	-	.	Parent=Os01t0956700-01
Chr01	irgsp1_rep	five_prime_UTR	42165166	42165248	.	-	.	Parent=Os01t0956700-01
Chr01	irgsp1_rep	CDS	42164915	42165165	.	-	0	Parent=Os01t0956700-01
Chr01	irgsp1_rep	CDS	42164712	42164836	.	-	1	Parent=Os01t0956700-01
Chr01	irgsp1_rep	CDS	42164153	42164598	.	-	2	Parent=Os01t0956700-01
Chr01	irgsp1_rep	CDS	42163983	42164067	.	-	0	Parent=Os01t0956700-01
Chr01	irgsp1_rep	CDS	42163848	42163891	.	-	2	Parent=Os01t0956700-01
Chr01	irgsp1_rep	three_prime_UTR	42163825	42163847	.	-	.	Parent=Os01t0956700-01
Chr01	irgsp1_rep	three_prime_UTR	42162592	42162838	.	-	.	Parent=Os01t0956700-01
Chr01	irgsp1_rep	mRNA	42169412	42172204	.	+	.	ID=Os01t0956800-00;Name=Os01t0956800-00;Locus_id=Os01g0956800;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A3A1N8 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: protein binding (GO:0005515),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),Leucine-rich repeat (IPR001611),NB-ARC (IPR002182);TENOR=Os01t0956800-00;KEGG=Os01t0956800-00
Chr01	irgsp1_rep	CDS	42169412	42170015	.	+	0	Parent=Os01t0956800-00
Chr01	irgsp1_rep	CDS	42170115	42172204	.	+	2	Parent=Os01t0956800-00
Chr01	irgsp1_rep	mRNA	42177836	42183724	.	+	.	ID=Os01t0957000-01;Name=Os01t0957000-01;Locus_id=Os01g0957000;CGSNL Gene Symbol=NADK1;CGSNL Gene Name=NAD KINASE 1;Oryzabase Gene Symbol Synonym(s)=OsNADK1;Oryzabase Gene Name Synonym(s)=NAD kinase 1;Note=ATP-NAD kinase%2C PpnK-type%2C all-beta domain containing protein.;Transcript_evidence=AK099730 (DDBJ%2C Best hit);ORF_evidence=Q5JK52;GO=Biological Process: metabolic process (GO:0008152),Molecular Function: NAD+ kinase activity (GO:0003951);InterPro=Inorganic polyphosphate/ATP-NAD kinase%2C predicted (IPR002504),ATP-NAD kinase%2C PpnK-type (IPR016064),ATP-NAD kinase%2C PpnK-type%2C all-beta (IPR017437),ATP-NAD kinase%2C PpnK-type%2C alpha/beta (IPR017438);NIAS_FLcDNA=J013089M16;Manual Curation=January 10%2C 2020;Oryzabase=23449;Expression=AK099730;TENOR=Os01t0957000-01;KEGG=Os01t0957000-01 (EC:2.7.1.23)
Chr01	irgsp1_rep	five_prime_UTR	42177836	42178023	.	+	.	Parent=Os01t0957000-01
Chr01	irgsp1_rep	CDS	42178024	42178050	.	+	0	Parent=Os01t0957000-01
Chr01	irgsp1_rep	CDS	42179572	42179761	.	+	0	Parent=Os01t0957000-01
Chr01	irgsp1_rep	CDS	42179892	42180011	.	+	2	Parent=Os01t0957000-01
Chr01	irgsp1_rep	CDS	42180090	42180382	.	+	2	Parent=Os01t0957000-01
Chr01	irgsp1_rep	CDS	42180514	42180608	.	+	0	Parent=Os01t0957000-01
Chr01	irgsp1_rep	CDS	42180717	42180823	.	+	1	Parent=Os01t0957000-01
Chr01	irgsp1_rep	CDS	42181464	42181537	.	+	2	Parent=Os01t0957000-01
Chr01	irgsp1_rep	CDS	42182010	42182088	.	+	0	Parent=Os01t0957000-01
Chr01	irgsp1_rep	CDS	42182301	42182608	.	+	2	Parent=Os01t0957000-01
Chr01	irgsp1_rep	CDS	42182994	42183299	.	+	0	Parent=Os01t0957000-01
Chr01	irgsp1_rep	three_prime_UTR	42183300	42183724	.	+	.	Parent=Os01t0957000-01
Chr01	irgsp1_rep	mRNA	42179962	42183719	.	+	.	ID=Os01t0957000-02;Name=Os01t0957000-02;Locus_id=Os01g0957000;CGSNL Gene Symbol=NADK1;CGSNL Gene Name=NAD KINASE 1;Oryzabase Gene Symbol Synonym(s)=OsNADK1;Oryzabase Gene Name Synonym(s)=NAD kinase 1;Note=Similar to cDNA clone:J013089M16%2C full insert sequence.;Transcript_evidence=AK061785 (DDBJ%2C Best hit);ORF_evidence=NP_001151954.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: NAD+ kinase activity (GO:0003951);InterPro=Inorganic polyphosphate/ATP-NAD kinase%2C predicted (IPR002504),ATP-NAD kinase%2C PpnK-type (IPR016064),ATP-NAD kinase%2C PpnK-type%2C all-beta (IPR017437),ATP-NAD kinase%2C PpnK-type%2C alpha/beta (IPR017438);NIAS_FLcDNA=001-039-E07;Oryzabase=23449;Expression=AK061785;TENOR=Os01t0957000-02;KEGG=Os01t0957000-02 (EC:2.7.1.23)
Chr01	irgsp1_rep	five_prime_UTR	42179962	42179962	.	+	.	Parent=Os01t0957000-02
Chr01	irgsp1_rep	CDS	42179963	42180011	.	+	0	Parent=Os01t0957000-02
Chr01	irgsp1_rep	CDS	42180090	42180382	.	+	2	Parent=Os01t0957000-02
Chr01	irgsp1_rep	CDS	42180514	42180608	.	+	0	Parent=Os01t0957000-02
Chr01	irgsp1_rep	CDS	42180717	42180823	.	+	1	Parent=Os01t0957000-02
Chr01	irgsp1_rep	CDS	42181464	42181537	.	+	2	Parent=Os01t0957000-02
Chr01	irgsp1_rep	CDS	42182010	42182088	.	+	0	Parent=Os01t0957000-02
Chr01	irgsp1_rep	CDS	42182301	42182608	.	+	2	Parent=Os01t0957000-02
Chr01	irgsp1_rep	CDS	42182994	42183299	.	+	0	Parent=Os01t0957000-02
Chr01	irgsp1_rep	three_prime_UTR	42183300	42183719	.	+	.	Parent=Os01t0957000-02
Chr01	irgsp1_rep	mRNA	42177832	42183727	.	+	.	ID=Os01t0957000-03;Name=Os01t0957000-03;Locus_id=Os01g0957000;RAP-DB Gene Symbol Synonym(s)=OsNADK1;RAP-DB Gene Name Synonym(s)=NAD kinase 1;CGSNL Gene Symbol=NADK1;CGSNL Gene Name=NAD KINASE 1;Oryzabase Gene Symbol Synonym(s)=OsNADK1;Oryzabase Gene Name Synonym(s)=NAD kinase 1;Note=NAD kinase%2C Mediation of intracellular redox balance%2C Drought tolerance;Transcript_evidence=Inferred from literature;ORF_evidence=B9EWJ0;GO=Biological Process: NADP biosynthetic process (GO:0006741),Biological Process: NAD metabolic process (GO:0019674),Molecular Function: NAD+ kinase activity (GO:0003951);InterPro=NAD kinase/diacylglycerol kinase-like domain superfamily (IPR016064),ATP-NAD kinase%2C PpnK-type%2C C-terminal (IPR017437),NAD kinase (IPR002504);Manual Curation=January 10%2C 2020;Literature_PMID=31910821;Oryzabase=23449;Subcellular location=cytoplasm (GO:0005737)
Chr01	irgsp1_rep	five_prime_UTR	42177832	42178023	.	+	.	Parent=Os01t0957000-03
Chr01	irgsp1_rep	CDS	42178024	42178050	.	+	0	Parent=Os01t0957000-03
Chr01	irgsp1_rep	CDS	42178174	42178290	.	+	0	Parent=Os01t0957000-03
Chr01	irgsp1_rep	CDS	42179572	42179761	.	+	0	Parent=Os01t0957000-03
Chr01	irgsp1_rep	CDS	42179892	42180011	.	+	2	Parent=Os01t0957000-03
Chr01	irgsp1_rep	CDS	42180090	42180382	.	+	2	Parent=Os01t0957000-03
Chr01	irgsp1_rep	CDS	42180514	42180608	.	+	0	Parent=Os01t0957000-03
Chr01	irgsp1_rep	CDS	42180717	42180823	.	+	1	Parent=Os01t0957000-03
Chr01	irgsp1_rep	CDS	42181464	42181537	.	+	2	Parent=Os01t0957000-03
Chr01	irgsp1_rep	CDS	42182010	42182088	.	+	0	Parent=Os01t0957000-03
Chr01	irgsp1_rep	CDS	42182301	42182608	.	+	2	Parent=Os01t0957000-03
Chr01	irgsp1_rep	CDS	42182994	42183299	.	+	0	Parent=Os01t0957000-03
Chr01	irgsp1_rep	three_prime_UTR	42183300	42183727	.	+	.	Parent=Os01t0957000-03
Chr01	irgsp1_rep	mRNA	42184508	42187651	.	+	.	ID=Os01t0957100-01;Name=Os01t0957100-01;Locus_id=Os01g0957100;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK122121 (DDBJ%2C Best hit);ORF_evidence=Q8LQ10 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033130J03;Expression=AK122121;TENOR=Os01t0957100-01;KEGG=Os01t0957100-01
Chr01	irgsp1_rep	five_prime_UTR	42184508	42184509	.	+	.	Parent=Os01t0957100-01
Chr01	irgsp1_rep	CDS	42184510	42185759	.	+	0	Parent=Os01t0957100-01
Chr01	irgsp1_rep	CDS	42185874	42187395	.	+	1	Parent=Os01t0957100-01
Chr01	irgsp1_rep	three_prime_UTR	42187396	42187651	.	+	.	Parent=Os01t0957100-01
Chr01	irgsp1_rep	mRNA	42190489	42193879	.	+	.	ID=Os01t0957200-01;Name=Os01t0957200-01;Locus_id=Os01g0957200;Note=Protein of unknown function DUF3411 domain containing protein.;Transcript_evidence=AK073433 (DDBJ%2C Best hit);ORF_evidence=B8A9I3 (UniProt);InterPro=Protein of unknown function DUF3411 (IPR021825);NIAS_FLcDNA=J033042P17;Expression=AK073433;TENOR=Os01t0957200-01;KEGG=Os01t0957200-01
Chr01	irgsp1_rep	five_prime_UTR	42190489	42190583	.	+	.	Parent=Os01t0957200-01
Chr01	irgsp1_rep	CDS	42190584	42191132	.	+	0	Parent=Os01t0957200-01
Chr01	irgsp1_rep	CDS	42191235	42191303	.	+	0	Parent=Os01t0957200-01
Chr01	irgsp1_rep	CDS	42191962	42192093	.	+	0	Parent=Os01t0957200-01
Chr01	irgsp1_rep	CDS	42192189	42192242	.	+	0	Parent=Os01t0957200-01
Chr01	irgsp1_rep	CDS	42192356	42192400	.	+	0	Parent=Os01t0957200-01
Chr01	irgsp1_rep	CDS	42193025	42193164	.	+	0	Parent=Os01t0957200-01
Chr01	irgsp1_rep	CDS	42193419	42193544	.	+	1	Parent=Os01t0957200-01
Chr01	irgsp1_rep	CDS	42193627	42193681	.	+	1	Parent=Os01t0957200-01
Chr01	irgsp1_rep	three_prime_UTR	42193682	42193879	.	+	.	Parent=Os01t0957200-01
Chr01	irgsp1_rep	mRNA	42206312	42208293	.	-	.	ID=Os01t0957500-00;Name=Os01t0957500-00;Locus_id=Os01g0957500;Note=Hypothetical protein.;Transcript_evidence=tplb0024g24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0957500-00
Chr01	irgsp1_rep	five_prime_UTR	42207761	42208293	.	-	.	Parent=Os01t0957500-00
Chr01	irgsp1_rep	five_prime_UTR	42207114	42207250	.	-	.	Parent=Os01t0957500-00
Chr01	irgsp1_rep	five_prime_UTR	42206766	42207044	.	-	.	Parent=Os01t0957500-00
Chr01	irgsp1_rep	CDS	42206349	42206765	.	-	0	Parent=Os01t0957500-00
Chr01	irgsp1_rep	three_prime_UTR	42206312	42206348	.	-	.	Parent=Os01t0957500-00
Chr01	irgsp1_rep	mRNA	42207009	42208510	.	+	.	ID=Os01t0957600-01;Name=Os01t0957600-01;Locus_id=Os01g0957600;CGSNL Gene Symbol=CYP71AA3;CGSNL Gene Name=CYTOCHROME P450 71AA3;Oryzabase Gene Symbol Synonym(s)=OsCYP71AA3;Oryzabase Gene Name Synonym(s)=CytoChrome P450 71AA3;Note=Similar to cDNA%2C clone: J053023H06%2C full insert sequence.;Transcript_evidence=AK059235 (DDBJ%2C Best hit);ORF_evidence=B7F8A8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);NIAS_FLcDNA=001-024-E12;Oryzabase=21826;TENOR=Os01t0957600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	42207009	42207257	.	+	0	Parent=Os01t0957600-01
Chr01	irgsp1_rep	CDS	42207771	42208388	.	+	0	Parent=Os01t0957600-01
Chr01	irgsp1_rep	three_prime_UTR	42208389	42208510	.	+	.	Parent=Os01t0957600-01
Chr01	irgsp1_rep	mRNA	42211884	42213685	.	+	.	ID=Os01t0957800-01;Name=Os01t0957800-01;Locus_id=Os01g0957800;CGSNL Gene Symbol=CYP71AA2;CGSNL Gene Name=CYTOCHROME P450 71AA2;Oryzabase Gene Symbol Synonym(s)=OsCYP71AA2;Oryzabase Gene Name Synonym(s)=CytoChrome P450 71AA2;Note=CytoChrome P450 domain containing protein.;Transcript_evidence=AK240753 (DDBJ%2C Best hit);ORF_evidence=Q8LQ06 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);NIAS_FLcDNA=J053023H06;Oryzabase=21825;TENOR=Os01t0957800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	42211884	42211885	.	+	.	Parent=Os01t0957800-01
Chr01	irgsp1_rep	CDS	42211886	42212842	.	+	0	Parent=Os01t0957800-01
Chr01	irgsp1_rep	CDS	42212998	42213672	.	+	0	Parent=Os01t0957800-01
Chr01	irgsp1_rep	three_prime_UTR	42213673	42213685	.	+	.	Parent=Os01t0957800-01
Chr01	irgsp1_rep	mRNA	42216976	42228068	.	+	.	ID=Os01t0957900-01;Name=Os01t0957900-01;Locus_id=Os01g0957900;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=AK068334 (DDBJ%2C Best hit);ORF_evidence=B8A9I8 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Uncharacterised domain NUC173 (IPR012978),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013149L02;Expression=AK068334;TENOR=Os01t0957900-01;KEGG=Os01t0957900-01
Chr01	irgsp1_rep	five_prime_UTR	42216976	42217048	.	+	.	Parent=Os01t0957900-01
Chr01	irgsp1_rep	CDS	42217049	42217606	.	+	0	Parent=Os01t0957900-01
Chr01	irgsp1_rep	CDS	42217681	42218203	.	+	0	Parent=Os01t0957900-01
Chr01	irgsp1_rep	CDS	42218985	42219230	.	+	2	Parent=Os01t0957900-01
Chr01	irgsp1_rep	CDS	42220219	42220307	.	+	2	Parent=Os01t0957900-01
Chr01	irgsp1_rep	CDS	42220623	42220833	.	+	0	Parent=Os01t0957900-01
Chr01	irgsp1_rep	CDS	42220907	42221088	.	+	2	Parent=Os01t0957900-01
Chr01	irgsp1_rep	CDS	42221215	42221454	.	+	0	Parent=Os01t0957900-01
Chr01	irgsp1_rep	CDS	42222333	42222520	.	+	0	Parent=Os01t0957900-01
Chr01	irgsp1_rep	CDS	42222872	42222965	.	+	1	Parent=Os01t0957900-01
Chr01	irgsp1_rep	CDS	42223049	42223105	.	+	0	Parent=Os01t0957900-01
Chr01	irgsp1_rep	CDS	42223194	42223328	.	+	0	Parent=Os01t0957900-01
Chr01	irgsp1_rep	CDS	42224102	42224167	.	+	0	Parent=Os01t0957900-01
Chr01	irgsp1_rep	CDS	42224387	42224500	.	+	0	Parent=Os01t0957900-01
Chr01	irgsp1_rep	CDS	42225491	42225652	.	+	0	Parent=Os01t0957900-01
Chr01	irgsp1_rep	CDS	42225735	42225863	.	+	0	Parent=Os01t0957900-01
Chr01	irgsp1_rep	CDS	42225965	42226066	.	+	0	Parent=Os01t0957900-01
Chr01	irgsp1_rep	CDS	42227070	42227146	.	+	0	Parent=Os01t0957900-01
Chr01	irgsp1_rep	CDS	42227242	42227599	.	+	1	Parent=Os01t0957900-01
Chr01	irgsp1_rep	three_prime_UTR	42227600	42228068	.	+	.	Parent=Os01t0957900-01
Chr01	irgsp1_rep	mRNA	42229585	42232625	.	+	.	ID=Os01t0958000-01;Name=Os01t0958000-01;Locus_id=Os01g0958000;CGSNL Gene Symbol=CDKC%3B2;CGSNL Gene Name=CYCLIN-DEPENDENT KINASE C%3B2;Oryzabase Gene Symbol Synonym(s)=CDKC%3B2%2C Orysa%3BCDKC%3B2%2C Orysa%3BCDKC%3B1%2C CDKC%3B1%2C OsCDKC1%2C OsCDKC%3B1;Oryzabase Gene Name Synonym(s)=C-type cyclin-dependent protein kinase 1;Note=Similar to Cell division control protein 2 homolog 2 (EC 2.7.1.37) (Fragment).;Transcript_evidence=AK103469 (DDBJ%2C Best hit);ORF_evidence=Q5JK68 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033130A03;Oryzabase=13291;Expression=AK103469;TENOR=Os01t0958000-01;KEGG=Os01t0958000-01 (EC:2.7.1.37%2C EC:2.7.11.22)
Chr01	irgsp1_rep	five_prime_UTR	42229585	42229665	.	+	.	Parent=Os01t0958000-01
Chr01	irgsp1_rep	CDS	42229666	42229775	.	+	0	Parent=Os01t0958000-01
Chr01	irgsp1_rep	CDS	42229862	42229943	.	+	1	Parent=Os01t0958000-01
Chr01	irgsp1_rep	CDS	42230038	42230128	.	+	0	Parent=Os01t0958000-01
Chr01	irgsp1_rep	CDS	42230225	42230254	.	+	2	Parent=Os01t0958000-01
Chr01	irgsp1_rep	CDS	42230344	42230456	.	+	2	Parent=Os01t0958000-01
Chr01	irgsp1_rep	CDS	42230554	42230626	.	+	0	Parent=Os01t0958000-01
Chr01	irgsp1_rep	CDS	42230722	42230842	.	+	2	Parent=Os01t0958000-01
Chr01	irgsp1_rep	CDS	42230931	42231048	.	+	1	Parent=Os01t0958000-01
Chr01	irgsp1_rep	CDS	42231335	42231474	.	+	0	Parent=Os01t0958000-01
Chr01	irgsp1_rep	CDS	42231554	42231611	.	+	1	Parent=Os01t0958000-01
Chr01	irgsp1_rep	CDS	42231709	42231779	.	+	0	Parent=Os01t0958000-01
Chr01	irgsp1_rep	CDS	42231849	42232383	.	+	1	Parent=Os01t0958000-01
Chr01	irgsp1_rep	three_prime_UTR	42232384	42232625	.	+	.	Parent=Os01t0958000-01
Chr01	irgsp1_rep	mRNA	42230929	42232625	.	+	.	ID=Os01t0958000-02;Name=Os01t0958000-02;Locus_id=Os01g0958000;CGSNL Gene Symbol=CDKC%3B2;CGSNL Gene Name=CYCLIN-DEPENDENT KINASE C%3B2;Oryzabase Gene Symbol Synonym(s)=CDKC%3B2%2C Orysa%3BCDKC%3B2%2C Orysa%3BCDKC%3B1%2C CDKC%3B1%2C OsCDKC1%2C OsCDKC%3B1;Oryzabase Gene Name Synonym(s)=C-type cyclin-dependent protein kinase 1;Note=Similar to Cyclin-dependent kinase C-2.;Transcript_evidence=AK109352 (DDBJ%2C Best hit);ORF_evidence=Q5JK68 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=006-205-A06;Oryzabase=13291;Expression=AK109352;TENOR=Os01t0958000-02;KEGG=Os01t0958000-02 (EC:2.7.11.22)
Chr01	irgsp1_rep	CDS	42230929	42231048	.	+	0	Parent=Os01t0958000-02
Chr01	irgsp1_rep	CDS	42231335	42231474	.	+	0	Parent=Os01t0958000-02
Chr01	irgsp1_rep	CDS	42231554	42231611	.	+	1	Parent=Os01t0958000-02
Chr01	irgsp1_rep	CDS	42231709	42231779	.	+	0	Parent=Os01t0958000-02
Chr01	irgsp1_rep	CDS	42231849	42232383	.	+	1	Parent=Os01t0958000-02
Chr01	irgsp1_rep	three_prime_UTR	42232384	42232625	.	+	.	Parent=Os01t0958000-02
Chr01	irgsp1_rep	mRNA	42234585	42237456	.	-	.	ID=Os01t0958100-01;Name=Os01t0958100-01;Locus_id=Os01g0958100;Note=Similar to chloroplast SRP receptor cpFtsY precursor.;Transcript_evidence=AK058574 (DDBJ%2C Best hit),AK109369 (DDBJ%2C Best hit);ORF_evidence=NP_001105732.1 (RefSeq);GO=Biological Process: SRP-dependent cotranslational protein targeting to membrane (GO:0006614),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: GTP binding (GO:0005525),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=Signal recognition particle%2C SRP54 subunit%2C GTPase (IPR000897),ATPase%2C AAA+ type%2C core (IPR003593),Cell division transporter substrate-binding protein FtsY (IPR004390),Signal recognition particle%2C SRP54 subunit%2C helical bundle (IPR013822);NIAS_FLcDNA=001-017-E11,006-207-D11;TENOR=Os01t0958100-01
Chr01	irgsp1_rep	five_prime_UTR	42237396	42237456	.	-	.	Parent=Os01t0958100-01
Chr01	irgsp1_rep	CDS	42237097	42237395	.	-	0	Parent=Os01t0958100-01
Chr01	irgsp1_rep	CDS	42236883	42236985	.	-	1	Parent=Os01t0958100-01
Chr01	irgsp1_rep	CDS	42236718	42236791	.	-	0	Parent=Os01t0958100-01
Chr01	irgsp1_rep	CDS	42236574	42236632	.	-	1	Parent=Os01t0958100-01
Chr01	irgsp1_rep	CDS	42235977	42236014	.	-	2	Parent=Os01t0958100-01
Chr01	irgsp1_rep	CDS	42235698	42235818	.	-	0	Parent=Os01t0958100-01
Chr01	irgsp1_rep	CDS	42235535	42235603	.	-	2	Parent=Os01t0958100-01
Chr01	irgsp1_rep	CDS	42235358	42235440	.	-	2	Parent=Os01t0958100-01
Chr01	irgsp1_rep	CDS	42235126	42235194	.	-	0	Parent=Os01t0958100-01
Chr01	irgsp1_rep	CDS	42234974	42235036	.	-	0	Parent=Os01t0958100-01
Chr01	irgsp1_rep	CDS	42234774	42234887	.	-	0	Parent=Os01t0958100-01
Chr01	irgsp1_rep	three_prime_UTR	42234585	42234773	.	-	.	Parent=Os01t0958100-01
Chr01	irgsp1_rep	mRNA	42234600	42237393	.	-	.	ID=Os01t0958100-02;Name=Os01t0958100-02;Locus_id=Os01g0958100;Note=Similar to chloroplast srp54 receptor1.;Transcript_evidence=AK103090 (DDBJ%2C Best hit);ORF_evidence=NP_001105732.1 (RefSeq);NIAS_FLcDNA=J033118J07;TENOR=Os01t0958100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	42237393	42237393	.	-	.	Parent=Os01t0958100-02
Chr01	irgsp1_rep	CDS	42237324	42237392	.	-	0	Parent=Os01t0958100-02
Chr01	irgsp1_rep	CDS	42237097	42237279	.	-	0	Parent=Os01t0958100-02
Chr01	irgsp1_rep	CDS	42236890	42236985	.	-	0	Parent=Os01t0958100-02
Chr01	irgsp1_rep	three_prime_UTR	42236883	42236889	.	-	.	Parent=Os01t0958100-02
Chr01	irgsp1_rep	three_prime_UTR	42236718	42236791	.	-	.	Parent=Os01t0958100-02
Chr01	irgsp1_rep	three_prime_UTR	42236574	42236632	.	-	.	Parent=Os01t0958100-02
Chr01	irgsp1_rep	three_prime_UTR	42235977	42236014	.	-	.	Parent=Os01t0958100-02
Chr01	irgsp1_rep	three_prime_UTR	42235698	42235818	.	-	.	Parent=Os01t0958100-02
Chr01	irgsp1_rep	three_prime_UTR	42235535	42235603	.	-	.	Parent=Os01t0958100-02
Chr01	irgsp1_rep	three_prime_UTR	42235358	42235440	.	-	.	Parent=Os01t0958100-02
Chr01	irgsp1_rep	three_prime_UTR	42235126	42235194	.	-	.	Parent=Os01t0958100-02
Chr01	irgsp1_rep	three_prime_UTR	42234974	42235036	.	-	.	Parent=Os01t0958100-02
Chr01	irgsp1_rep	three_prime_UTR	42234600	42234887	.	-	.	Parent=Os01t0958100-02
Chr01	irgsp1_rep	mRNA	42238811	42240420	.	+	.	ID=Os01t0958200-01;Name=Os01t0958200-01;Locus_id=Os01g0958200;Note=Curculin-like (mannose-binding) lectin domain containing protein.;Transcript_evidence=AK107370 (DDBJ%2C Best hit);ORF_evidence=A2WZA3 (UniProt);GO=Biological Process: recognition of pollen (GO:0048544),Molecular Function: sugar binding (GO:0005529);InterPro=S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480);NIAS_FLcDNA=002-127-B03;Expression=AK107370;TENOR=Os01t0958200-01;KEGG=Os01t0958200-01
Chr01	irgsp1_rep	five_prime_UTR	42238811	42238865	.	+	.	Parent=Os01t0958200-01
Chr01	irgsp1_rep	CDS	42238866	42240257	.	+	0	Parent=Os01t0958200-01
Chr01	irgsp1_rep	three_prime_UTR	42240258	42240420	.	+	.	Parent=Os01t0958200-01
Chr01	irgsp1_rep	mRNA	42240825	42244043	.	+	.	ID=Os01t0958400-01;Name=Os01t0958400-01;Locus_id=Os01g0958400;Note=Similar to CFM6.;Transcript_evidence=AK106256 (DDBJ%2C Best hit);ORF_evidence=NP_001151028.1 (RefSeq);GO=Molecular Function: RNA binding (GO:0003723);InterPro=RNA-binding%2C CRM domain (IPR001890);NIAS_FLcDNA=002-100-E11;Oryzabase=23503;Expression=AK106256;TENOR=Os01t0958400-01;KEGG=Os01t0958400-01
Chr01	irgsp1_rep	five_prime_UTR	42240825	42241121	.	+	.	Parent=Os01t0958400-01
Chr01	irgsp1_rep	five_prime_UTR	42241756	42241858	.	+	.	Parent=Os01t0958400-01
Chr01	irgsp1_rep	CDS	42241859	42241962	.	+	0	Parent=Os01t0958400-01
Chr01	irgsp1_rep	CDS	42242350	42242671	.	+	1	Parent=Os01t0958400-01
Chr01	irgsp1_rep	CDS	42243019	42243420	.	+	0	Parent=Os01t0958400-01
Chr01	irgsp1_rep	CDS	42243563	42243919	.	+	0	Parent=Os01t0958400-01
Chr01	irgsp1_rep	three_prime_UTR	42243920	42244043	.	+	.	Parent=Os01t0958400-01
Chr01	irgsp1_rep	mRNA	42240837	42244651	.	+	.	ID=Os01t0958400-02;Name=Os01t0958400-02;Locus_id=Os01g0958400;Note=Similar to CFM6.;Transcript_evidence=AK066987 (DDBJ%2C Best hit);ORF_evidence=NP_001151028.1 (RefSeq);GO=Molecular Function: RNA binding (GO:0003723);InterPro=RNA-binding%2C CRM domain (IPR001890);NIAS_FLcDNA=J013093H11;Oryzabase=23503;Expression=AK066987;TENOR=Os01t0958400-02;KEGG=Os01t0958400-02
Chr01	irgsp1_rep	five_prime_UTR	42240837	42241121	.	+	.	Parent=Os01t0958400-02
Chr01	irgsp1_rep	five_prime_UTR	42241756	42241858	.	+	.	Parent=Os01t0958400-02
Chr01	irgsp1_rep	CDS	42241859	42241962	.	+	0	Parent=Os01t0958400-02
Chr01	irgsp1_rep	CDS	42242350	42242671	.	+	1	Parent=Os01t0958400-02
Chr01	irgsp1_rep	CDS	42243019	42243420	.	+	0	Parent=Os01t0958400-02
Chr01	irgsp1_rep	CDS	42243563	42243907	.	+	0	Parent=Os01t0958400-02
Chr01	irgsp1_rep	CDS	42244012	42244092	.	+	0	Parent=Os01t0958400-02
Chr01	irgsp1_rep	three_prime_UTR	42244093	42244651	.	+	.	Parent=Os01t0958400-02
Chr01	irgsp1_rep	mRNA	42240858	42245248	.	+	.	ID=Os01t0958400-03;Name=Os01t0958400-03;Locus_id=Os01g0958400;Note=RNA-binding%2C CRM domain domain containing protein.;Transcript_evidence=AK121241 (DDBJ%2C Best hit);ORF_evidence=NP_001151028.1 (RefSeq);GO=Molecular Function: RNA binding (GO:0003723);InterPro=RNA-binding%2C CRM domain (IPR001890);NIAS_FLcDNA=J023097P14;Oryzabase=23503;Expression=AK121241;TENOR=Os01t0958400-03;KEGG=Os01t0958400-03
Chr01	irgsp1_rep	five_prime_UTR	42240858	42241121	.	+	.	Parent=Os01t0958400-03
Chr01	irgsp1_rep	five_prime_UTR	42241756	42241858	.	+	.	Parent=Os01t0958400-03
Chr01	irgsp1_rep	CDS	42241859	42241962	.	+	0	Parent=Os01t0958400-03
Chr01	irgsp1_rep	CDS	42242350	42242671	.	+	1	Parent=Os01t0958400-03
Chr01	irgsp1_rep	CDS	42243019	42243420	.	+	0	Parent=Os01t0958400-03
Chr01	irgsp1_rep	CDS	42243563	42243907	.	+	0	Parent=Os01t0958400-03
Chr01	irgsp1_rep	CDS	42244740	42244814	.	+	0	Parent=Os01t0958400-03
Chr01	irgsp1_rep	three_prime_UTR	42244815	42245248	.	+	.	Parent=Os01t0958400-03
Chr01	irgsp1_rep	mRNA	42247885	42255249	.	+	.	ID=Os01t0958500-01;Name=Os01t0958500-01;Locus_id=Os01g0958500;Note=Similar to RNA binding protein-like.;Transcript_evidence=AK072960 (DDBJ%2C Best hit);ORF_evidence=NP_564127.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023150K08;Expression=AK072960;TENOR=Os01t0958500-01;KEGG=Os01t0958500-01
Chr01	irgsp1_rep	five_prime_UTR	42247885	42248194	.	+	.	Parent=Os01t0958500-01
Chr01	irgsp1_rep	CDS	42248195	42248392	.	+	0	Parent=Os01t0958500-01
Chr01	irgsp1_rep	CDS	42248756	42248897	.	+	0	Parent=Os01t0958500-01
Chr01	irgsp1_rep	CDS	42249969	42250080	.	+	2	Parent=Os01t0958500-01
Chr01	irgsp1_rep	CDS	42251861	42251897	.	+	1	Parent=Os01t0958500-01
Chr01	irgsp1_rep	CDS	42252181	42252514	.	+	0	Parent=Os01t0958500-01
Chr01	irgsp1_rep	CDS	42254137	42254246	.	+	2	Parent=Os01t0958500-01
Chr01	irgsp1_rep	three_prime_UTR	42254247	42255249	.	+	.	Parent=Os01t0958500-01
Chr01	irgsp1_rep	mRNA	42260316	42264854	.	+	.	ID=Os01t0958700-01;Name=Os01t0958700-01;Locus_id=Os01g0958700;Note=Membrane attack complex component/perforin/complement C9 family protein.;Transcript_evidence=AK064908 (DDBJ%2C Best hit);ORF_evidence=Q1SKW8 (UniProt);InterPro=Membrane attack complex component/perforin (MACPF) domain (IPR020864);NIAS_FLcDNA=J013000M02;Expression=AK064908;TENOR=Os01t0958700-01;KEGG=Os01t0958700-01
Chr01	irgsp1_rep	five_prime_UTR	42260316	42261020	.	+	.	Parent=Os01t0958700-01
Chr01	irgsp1_rep	CDS	42261021	42261284	.	+	0	Parent=Os01t0958700-01
Chr01	irgsp1_rep	CDS	42261488	42261726	.	+	0	Parent=Os01t0958700-01
Chr01	irgsp1_rep	CDS	42261909	42262113	.	+	1	Parent=Os01t0958700-01
Chr01	irgsp1_rep	CDS	42262361	42262429	.	+	0	Parent=Os01t0958700-01
Chr01	irgsp1_rep	CDS	42262511	42262697	.	+	0	Parent=Os01t0958700-01
Chr01	irgsp1_rep	CDS	42263402	42263568	.	+	2	Parent=Os01t0958700-01
Chr01	irgsp1_rep	CDS	42263992	42264687	.	+	0	Parent=Os01t0958700-01
Chr01	irgsp1_rep	three_prime_UTR	42264688	42264854	.	+	.	Parent=Os01t0958700-01
Chr01	irgsp1_rep	mRNA	42265052	42268466	.	-	.	ID=Os01t0958800-01;Name=Os01t0958800-01;Locus_id=Os01g0958800;Note=Conserved hypothetical protein.;Transcript_evidence=AK103121 (DDBJ%2C Best hit);ORF_evidence=B8A9J3 (UniProt);NIAS_FLcDNA=J033119K06;TENOR=Os01t0958800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	42268466	42268466	.	-	.	Parent=Os01t0958800-01
Chr01	irgsp1_rep	CDS	42268363	42268465	.	-	0	Parent=Os01t0958800-01
Chr01	irgsp1_rep	CDS	42268204	42268244	.	-	2	Parent=Os01t0958800-01
Chr01	irgsp1_rep	CDS	42268011	42268116	.	-	0	Parent=Os01t0958800-01
Chr01	irgsp1_rep	CDS	42267866	42267891	.	-	2	Parent=Os01t0958800-01
Chr01	irgsp1_rep	three_prime_UTR	42267818	42267865	.	-	.	Parent=Os01t0958800-01
Chr01	irgsp1_rep	three_prime_UTR	42267651	42267722	.	-	.	Parent=Os01t0958800-01
Chr01	irgsp1_rep	three_prime_UTR	42267541	42267569	.	-	.	Parent=Os01t0958800-01
Chr01	irgsp1_rep	three_prime_UTR	42267423	42267473	.	-	.	Parent=Os01t0958800-01
Chr01	irgsp1_rep	three_prime_UTR	42267042	42267092	.	-	.	Parent=Os01t0958800-01
Chr01	irgsp1_rep	three_prime_UTR	42266460	42266519	.	-	.	Parent=Os01t0958800-01
Chr01	irgsp1_rep	three_prime_UTR	42266295	42266377	.	-	.	Parent=Os01t0958800-01
Chr01	irgsp1_rep	three_prime_UTR	42265791	42265938	.	-	.	Parent=Os01t0958800-01
Chr01	irgsp1_rep	three_prime_UTR	42265640	42265690	.	-	.	Parent=Os01t0958800-01
Chr01	irgsp1_rep	three_prime_UTR	42265391	42265495	.	-	.	Parent=Os01t0958800-01
Chr01	irgsp1_rep	three_prime_UTR	42265052	42265292	.	-	.	Parent=Os01t0958800-01
Chr01	irgsp1_rep	mRNA	42265023	42267069	.	-	.	ID=Os01t0958800-02;Name=Os01t0958800-02;Locus_id=Os01g0958800;Note=Protein of unknown function DUF2305 domain containing protein.;Transcript_evidence=AK059634 (DDBJ%2C Best hit);ORF_evidence=B8A9J3 (UniProt);InterPro=Protein of unknown function DUF2305 (IPR019363);NIAS_FLcDNA=001-031-A07;Expression=AK059634;TENOR=Os01t0958800-02;KEGG=Os01t0958800-02
Chr01	irgsp1_rep	five_prime_UTR	42267069	42267069	.	-	.	Parent=Os01t0958800-02
Chr01	irgsp1_rep	CDS	42267042	42267068	.	-	0	Parent=Os01t0958800-02
Chr01	irgsp1_rep	CDS	42266460	42266519	.	-	0	Parent=Os01t0958800-02
Chr01	irgsp1_rep	CDS	42266295	42266377	.	-	0	Parent=Os01t0958800-02
Chr01	irgsp1_rep	CDS	42265791	42265938	.	-	1	Parent=Os01t0958800-02
Chr01	irgsp1_rep	CDS	42265640	42265690	.	-	0	Parent=Os01t0958800-02
Chr01	irgsp1_rep	CDS	42265391	42265495	.	-	0	Parent=Os01t0958800-02
Chr01	irgsp1_rep	CDS	42265161	42265292	.	-	0	Parent=Os01t0958800-02
Chr01	irgsp1_rep	three_prime_UTR	42265023	42265160	.	-	.	Parent=Os01t0958800-02
Chr01	irgsp1_rep	mRNA	42268902	42274913	.	+	.	ID=Os01t0958900-01;Name=Os01t0958900-01;Locus_id=Os01g0958900;Oryzabase Gene Symbol Synonym(s)=OsMLH1;Note=Similar to MLH1 protein (Fragment).;Transcript_evidence=AK103319 (DDBJ%2C Best hit);ORF_evidence=E2IGX6 (UniProt);GO=Biological Process: mismatch repair (GO:0006298),Cellular Component: nucleus (GO:0005634),Molecular Function: ATP binding (GO:0005524),Molecular Function: mismatched DNA binding (GO:0030983);InterPro=DNA mismatch repair protein (IPR002099),ATPase-like%2C ATP-binding domain (IPR003594),DNA mismatch repair protein Mlh1 (IPR011186),DNA mismatch repair protein%2C C-terminal (IPR013507),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),DNA mismatch repair%2C conserved site (IPR014762),DNA mismatch repair protein%2C N-terminal (IPR014763),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=J033125I19;Oryzabase=11524;Expression=AK103319;TENOR=Os01t0958900-01;KEGG=Os01t0958900-01
Chr01	irgsp1_rep	five_prime_UTR	42268902	42269014	.	+	.	Parent=Os01t0958900-01
Chr01	irgsp1_rep	CDS	42269015	42269251	.	+	0	Parent=Os01t0958900-01
Chr01	irgsp1_rep	CDS	42269375	42269547	.	+	0	Parent=Os01t0958900-01
Chr01	irgsp1_rep	CDS	42269628	42269700	.	+	1	Parent=Os01t0958900-01
Chr01	irgsp1_rep	CDS	42269790	42269924	.	+	0	Parent=Os01t0958900-01
Chr01	irgsp1_rep	CDS	42269994	42270204	.	+	0	Parent=Os01t0958900-01
Chr01	irgsp1_rep	CDS	42270528	42270676	.	+	2	Parent=Os01t0958900-01
Chr01	irgsp1_rep	CDS	42270811	42270909	.	+	0	Parent=Os01t0958900-01
Chr01	irgsp1_rep	CDS	42271559	42271631	.	+	0	Parent=Os01t0958900-01
Chr01	irgsp1_rep	CDS	42271818	42271950	.	+	2	Parent=Os01t0958900-01
Chr01	irgsp1_rep	CDS	42272242	42272336	.	+	1	Parent=Os01t0958900-01
Chr01	irgsp1_rep	CDS	42272416	42272524	.	+	2	Parent=Os01t0958900-01
Chr01	irgsp1_rep	CDS	42272778	42272937	.	+	1	Parent=Os01t0958900-01
Chr01	irgsp1_rep	CDS	42273075	42273236	.	+	0	Parent=Os01t0958900-01
Chr01	irgsp1_rep	CDS	42273456	42273627	.	+	0	Parent=Os01t0958900-01
Chr01	irgsp1_rep	CDS	42273896	42274044	.	+	2	Parent=Os01t0958900-01
Chr01	irgsp1_rep	CDS	42274556	42274600	.	+	0	Parent=Os01t0958900-01
Chr01	irgsp1_rep	three_prime_UTR	42274601	42274913	.	+	.	Parent=Os01t0958900-01
Chr01	irgsp1_rep	mRNA	42268937	42274900	.	+	.	ID=Os01t0958900-02;Name=Os01t0958900-02;Locus_id=Os01g0958900;Oryzabase Gene Symbol Synonym(s)=OsMLH1;Note=Similar to MLH1 protein (Fragment).;Transcript_evidence=AK070111 (DDBJ%2C Best hit);ORF_evidence=E2IGX6 (UniProt);GO=Biological Process: mismatch repair (GO:0006298),Cellular Component: nucleus (GO:0005634),Molecular Function: ATP binding (GO:0005524),Molecular Function: mismatched DNA binding (GO:0030983);InterPro=DNA mismatch repair protein (IPR002099),ATPase-like%2C ATP-binding domain (IPR003594),DNA mismatch repair protein Mlh1 (IPR011186),DNA mismatch repair protein%2C C-terminal (IPR013507),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),DNA mismatch repair%2C conserved site (IPR014762),DNA mismatch repair protein%2C N-terminal (IPR014763),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=J023041N01;Oryzabase=11524;Expression=AK070111;TENOR=Os01t0958900-02;KEGG=Os01t0958900-02
Chr01	irgsp1_rep	five_prime_UTR	42268937	42269014	.	+	.	Parent=Os01t0958900-02
Chr01	irgsp1_rep	CDS	42269015	42269251	.	+	0	Parent=Os01t0958900-02
Chr01	irgsp1_rep	CDS	42269375	42269547	.	+	0	Parent=Os01t0958900-02
Chr01	irgsp1_rep	CDS	42269628	42269700	.	+	1	Parent=Os01t0958900-02
Chr01	irgsp1_rep	CDS	42269790	42269924	.	+	0	Parent=Os01t0958900-02
Chr01	irgsp1_rep	CDS	42269994	42270204	.	+	0	Parent=Os01t0958900-02
Chr01	irgsp1_rep	CDS	42270528	42270676	.	+	2	Parent=Os01t0958900-02
Chr01	irgsp1_rep	CDS	42270811	42270909	.	+	0	Parent=Os01t0958900-02
Chr01	irgsp1_rep	CDS	42271559	42271631	.	+	0	Parent=Os01t0958900-02
Chr01	irgsp1_rep	CDS	42271818	42271950	.	+	2	Parent=Os01t0958900-02
Chr01	irgsp1_rep	CDS	42272242	42272336	.	+	1	Parent=Os01t0958900-02
Chr01	irgsp1_rep	CDS	42272416	42272524	.	+	2	Parent=Os01t0958900-02
Chr01	irgsp1_rep	CDS	42272778	42272937	.	+	1	Parent=Os01t0958900-02
Chr01	irgsp1_rep	CDS	42273075	42273236	.	+	0	Parent=Os01t0958900-02
Chr01	irgsp1_rep	CDS	42273456	42273627	.	+	0	Parent=Os01t0958900-02
Chr01	irgsp1_rep	CDS	42273896	42274044	.	+	2	Parent=Os01t0958900-02
Chr01	irgsp1_rep	CDS	42274556	42274600	.	+	0	Parent=Os01t0958900-02
Chr01	irgsp1_rep	three_prime_UTR	42274601	42274900	.	+	.	Parent=Os01t0958900-02
Chr01	irgsp1_rep	mRNA	42269992	42274053	.	-	.	ID=Os01t0958950-00;Name=Os01t0958950-00;Locus_id=Os01g0958950;Note=Hypothetical protein.;Transcript_evidence=tplb0029j04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0958950-00
Chr01	irgsp1_rep	five_prime_UTR	42273973	42274053	.	-	.	Parent=Os01t0958950-00
Chr01	irgsp1_rep	CDS	42273882	42273972	.	-	0	Parent=Os01t0958950-00
Chr01	irgsp1_rep	CDS	42273484	42273617	.	-	2	Parent=Os01t0958950-00
Chr01	irgsp1_rep	three_prime_UTR	42273461	42273483	.	-	.	Parent=Os01t0958950-00
Chr01	irgsp1_rep	three_prime_UTR	42273091	42273244	.	-	.	Parent=Os01t0958950-00
Chr01	irgsp1_rep	three_prime_UTR	42272776	42272949	.	-	.	Parent=Os01t0958950-00
Chr01	irgsp1_rep	three_prime_UTR	42272427	42272522	.	-	.	Parent=Os01t0958950-00
Chr01	irgsp1_rep	three_prime_UTR	42272229	42272346	.	-	.	Parent=Os01t0958950-00
Chr01	irgsp1_rep	three_prime_UTR	42271813	42271936	.	-	.	Parent=Os01t0958950-00
Chr01	irgsp1_rep	three_prime_UTR	42271552	42271628	.	-	.	Parent=Os01t0958950-00
Chr01	irgsp1_rep	three_prime_UTR	42270807	42270904	.	-	.	Parent=Os01t0958950-00
Chr01	irgsp1_rep	three_prime_UTR	42270527	42270672	.	-	.	Parent=Os01t0958950-00
Chr01	irgsp1_rep	three_prime_UTR	42269992	42270203	.	-	.	Parent=Os01t0958950-00
Chr01	irgsp1_rep	mRNA	42275543	42280544	.	+	.	ID=Os01t0959000-01;Name=Os01t0959000-01;Locus_id=Os01g0959000;RAP-DB Gene Symbol Synonym(s)=OsSR45;CGSNL Gene Symbol=SR45;Oryzabase Gene Symbol Synonym(s)=OsSR45;Oryzabase Gene Name Synonym(s)=splicing factor OsSR45;Note=Splicing factor%2C mRNA processing;Transcript_evidence=AK070420;ORF_evidence=Q5JN45;GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Nucleotide-binding alpha-beta plait domain superfamily (IPR012677),RNA-binding domain superfamily (IPR035979),RNA recognition motif domain (IPR000504),RNPS1%2C RNA recognition motif (IPR034201);NIAS_FLcDNA=J023048A15;Manual Curation=January 14%2C 2020;Literature_PMID=31925835;Oryzabase=23461;Expression=AK070420;TENOR=Os01t0959000-01;KEGG=Os01t0959000-01;Subcellular location=nuclear speckles (GO:0016607), cytoplasmic foci (GO:0000932)
Chr01	irgsp1_rep	five_prime_UTR	42275543	42275618	.	+	.	Parent=Os01t0959000-01
Chr01	irgsp1_rep	CDS	42275619	42275797	.	+	0	Parent=Os01t0959000-01
Chr01	irgsp1_rep	CDS	42276639	42276752	.	+	1	Parent=Os01t0959000-01
Chr01	irgsp1_rep	CDS	42277163	42277251	.	+	1	Parent=Os01t0959000-01
Chr01	irgsp1_rep	CDS	42278091	42278137	.	+	2	Parent=Os01t0959000-01
Chr01	irgsp1_rep	CDS	42278218	42278298	.	+	0	Parent=Os01t0959000-01
Chr01	irgsp1_rep	CDS	42278379	42278541	.	+	0	Parent=Os01t0959000-01
Chr01	irgsp1_rep	CDS	42278719	42278962	.	+	2	Parent=Os01t0959000-01
Chr01	irgsp1_rep	CDS	42279042	42279110	.	+	1	Parent=Os01t0959000-01
Chr01	irgsp1_rep	CDS	42279333	42279464	.	+	1	Parent=Os01t0959000-01
Chr01	irgsp1_rep	CDS	42279558	42279630	.	+	1	Parent=Os01t0959000-01
Chr01	irgsp1_rep	CDS	42280036	42280073	.	+	0	Parent=Os01t0959000-01
Chr01	irgsp1_rep	CDS	42280162	42280231	.	+	1	Parent=Os01t0959000-01
Chr01	irgsp1_rep	three_prime_UTR	42280232	42280544	.	+	.	Parent=Os01t0959000-01
Chr01	irgsp1_rep	mRNA	42279349	42280367	.	-	.	ID=Os01t0959050-00;Name=Os01t0959050-00;Locus_id=Os01g0959050;Note=Hypothetical protein.;Transcript_evidence=BT016894 (DDBJ);ORF_evidence=GeneMark;TENOR=Os01t0959050-00
Chr01	irgsp1_rep	five_prime_UTR	42280366	42280367	.	-	.	Parent=Os01t0959050-00
Chr01	irgsp1_rep	CDS	42280147	42280365	.	-	0	Parent=Os01t0959050-00
Chr01	irgsp1_rep	CDS	42279569	42279662	.	-	0	Parent=Os01t0959050-00
Chr01	irgsp1_rep	CDS	42279349	42279477	.	-	2	Parent=Os01t0959050-00
Chr01	irgsp1_rep	mRNA	42281274	42281973	.	-	.	ID=Os01t0959100-01;Name=Os01t0959100-01;Locus_id=Os01g0959100;CGSNL Gene Symbol=ASR3;CGSNL Gene Name=ABSCISIC ACID-STRESS-RIPENING-INDUCIBLE 3 PROTEIN;Oryzabase Gene Symbol Synonym(s)=Asr3%2C OsASR5%2C OsASR1%2C Asr1;Oryzabase Gene Name Synonym(s)=Abiotic Stress Responsive 5%2C "ABA-%2C stress and ripening-induced protein 1";Note=Similar to Abscisic stress ripening protein 1.;Transcript_evidence=AK063053 (DDBJ%2C Best hit);ORF_evidence=D1ME83 (UniProt);GO=Biological Process: response to stress (GO:0006950);InterPro=ABA/WDS induced protein (IPR003496);NIAS_FLcDNA=001-110-F01;Oryzabase=8406;Expression=AK063053;TENOR=Os01t0959100-01;KEGG=Os01t0959100-01
Chr01	irgsp1_rep	five_prime_UTR	42281858	42281973	.	-	.	Parent=Os01t0959100-01
Chr01	irgsp1_rep	CDS	42281723	42281857	.	-	0	Parent=Os01t0959100-01
Chr01	irgsp1_rep	CDS	42281436	42281591	.	-	0	Parent=Os01t0959100-01
Chr01	irgsp1_rep	three_prime_UTR	42281274	42281435	.	-	.	Parent=Os01t0959100-01
Chr01	irgsp1_rep	mRNA	42282832	42283619	.	+	.	ID=Os01t0959200-01;Name=Os01t0959200-01;Locus_id=Os01g0959200;CGSNL Gene Symbol=ASR4;CGSNL Gene Name=ABSCISIC ACID-STRESS-RIPENING-INDUCIBLE 4 PROTEIN;Oryzabase Gene Symbol Synonym(s)=Asr4%2C OsASR6%2C OsASR2%2C Asr2;Oryzabase Gene Name Synonym(s)=Abiotic Stress Responsive 6%2C "ABA-%2C stress and ripening-induced protein 2";Note=Similar to Ci21A protein.;Transcript_evidence=AK318549 (DDBJ%2C Best hit);ORF_evidence=Q9ZRB6 (UniProt);GO=Biological Process: response to stress (GO:0006950);InterPro=ABA/WDS induced protein (IPR003496);NIAS_FLcDNA=J075129P18;Oryzabase=8407;TENOR=Os01t0959200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	42282832	42282904	.	+	.	Parent=Os01t0959200-01
Chr01	irgsp1_rep	CDS	42282905	42283087	.	+	0	Parent=Os01t0959200-01
Chr01	irgsp1_rep	CDS	42283219	42283386	.	+	0	Parent=Os01t0959200-01
Chr01	irgsp1_rep	three_prime_UTR	42283387	42283619	.	+	.	Parent=Os01t0959200-01
Chr01	irgsp1_rep	mRNA	42297103	42299800	.	+	.	ID=Os01t0959600-00;Name=Os01t0959600-00;Locus_id=Os01g0959600;Oryzabase Gene Symbol Synonym(s)=EMP5%2C Os EMP5%2C OsEMP5;Oryzabase Gene Name Synonym(s)=Empty Pericarp5;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK375880 (DDBJ);ORF_evidence=Q8S2C5 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);Oryzabase=12295;TENOR=Os01t0959600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	42297103	42298883	.	+	0	Parent=Os01t0959600-00
Chr01	irgsp1_rep	CDS	42299066	42299798	.	+	1	Parent=Os01t0959600-00
Chr01	irgsp1_rep	three_prime_UTR	42299799	42299800	.	+	.	Parent=Os01t0959600-00
Chr01	irgsp1_rep	mRNA	42301803	42302292	.	+	.	ID=Os01t0959750-00;Name=Os01t0959750-00;Locus_id=Os01g0959750;Note=Conserved hypothetical protein.;Transcript_evidence=CU861843 (DDBJ%2C Best hit);ORF_evidence=NP_001172753.1 (RefSeq);TENOR=Os01t0959750-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	42301803	42302081	.	+	.	Parent=Os01t0959750-00
Chr01	irgsp1_rep	CDS	42302082	42302153	.	+	0	Parent=Os01t0959750-00
Chr01	irgsp1_rep	three_prime_UTR	42302154	42302292	.	+	.	Parent=Os01t0959750-00
Chr01	irgsp1_rep	mRNA	42303492	42308881	.	-	.	ID=Os01t0959800-01;Name=Os01t0959800-01;Locus_id=Os01g0959800;Note=Similar to PSD2 (phosphatidylserine decarboxylase 2)%3B phosphatidylserine decarboxylase.;Transcript_evidence=AK318565 (DDBJ%2C Best hit);ORF_evidence=NP_200529.4 (RefSeq);GO=Biological Process: phospholipid biosynthetic process (GO:0008654),Molecular Function: phosphatidylserine decarboxylase activity (GO:0004609);InterPro=Phosphatidylserine decarboxylase-related (IPR003817),Phosphatidylserine decarboxylase (IPR005221);NIAS_FLcDNA=J075199H10;TENOR=Os01t0959800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	42308797	42308881	.	-	.	Parent=Os01t0959800-01
Chr01	irgsp1_rep	five_prime_UTR	42308514	42308689	.	-	.	Parent=Os01t0959800-01
Chr01	irgsp1_rep	CDS	42308335	42308513	.	-	0	Parent=Os01t0959800-01
Chr01	irgsp1_rep	CDS	42308148	42308232	.	-	1	Parent=Os01t0959800-01
Chr01	irgsp1_rep	CDS	42307868	42307979	.	-	0	Parent=Os01t0959800-01
Chr01	irgsp1_rep	CDS	42307149	42307249	.	-	2	Parent=Os01t0959800-01
Chr01	irgsp1_rep	CDS	42306554	42306601	.	-	0	Parent=Os01t0959800-01
Chr01	irgsp1_rep	CDS	42305629	42305775	.	-	0	Parent=Os01t0959800-01
Chr01	irgsp1_rep	CDS	42305122	42305217	.	-	0	Parent=Os01t0959800-01
Chr01	irgsp1_rep	CDS	42304909	42304983	.	-	0	Parent=Os01t0959800-01
Chr01	irgsp1_rep	CDS	42304685	42304777	.	-	0	Parent=Os01t0959800-01
Chr01	irgsp1_rep	CDS	42304169	42304255	.	-	0	Parent=Os01t0959800-01
Chr01	irgsp1_rep	CDS	42304034	42304084	.	-	0	Parent=Os01t0959800-01
Chr01	irgsp1_rep	CDS	42303780	42303923	.	-	0	Parent=Os01t0959800-01
Chr01	irgsp1_rep	three_prime_UTR	42303492	42303779	.	-	.	Parent=Os01t0959800-01
Chr01	irgsp1_rep	mRNA	42312149	42313560	.	+	.	ID=Os01t0959900-01;Name=Os01t0959900-01;Locus_id=Os01g0959900;Note=Similar to predicted protein.;Transcript_evidence=AK066497 (DDBJ%2C Best hit);ORF_evidence=NP_565093.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: plasma membrane (GO:0005886),Molecular Function: oxidoreductase activity%2C acting on NADH or NADPH%2C quinone or similar compound as acceptor (GO:0016655);InterPro=NAD(P)H-quinone oxidoreductase subunit O (IPR020905);NIAS_FLcDNA=J013071N18;Expression=AK066497;TENOR=Os01t0959900-01;KEGG=Os01t0959900-01
Chr01	irgsp1_rep	five_prime_UTR	42312149	42312594	.	+	.	Parent=Os01t0959900-01
Chr01	irgsp1_rep	CDS	42312595	42312660	.	+	0	Parent=Os01t0959900-01
Chr01	irgsp1_rep	CDS	42312787	42312852	.	+	0	Parent=Os01t0959900-01
Chr01	irgsp1_rep	CDS	42312968	42313009	.	+	0	Parent=Os01t0959900-01
Chr01	irgsp1_rep	CDS	42313088	42313147	.	+	0	Parent=Os01t0959900-01
Chr01	irgsp1_rep	CDS	42313245	42313274	.	+	0	Parent=Os01t0959900-01
Chr01	irgsp1_rep	three_prime_UTR	42313275	42313560	.	+	.	Parent=Os01t0959900-01
Chr01	irgsp1_rep	mRNA	42312184	42313573	.	+	.	ID=Os01t0959900-02;Name=Os01t0959900-02;Locus_id=Os01g0959900;Note=Similar to NDH-O (NAD(P)H:plastoquinone dehydrogenase complex subunit O).;Transcript_evidence=AK058375 (DDBJ%2C Best hit);ORF_evidence=NP_565093.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: plasma membrane (GO:0005886),Molecular Function: oxidoreductase activity%2C acting on NADH or NADPH%2C quinone or similar compound as acceptor (GO:0016655);InterPro=NAD(P)H-quinone oxidoreductase subunit O (IPR020905);NIAS_FLcDNA=001-014-G10;Expression=AK058375;TENOR=Os01t0959900-02;KEGG=Os01t0959900-02
Chr01	irgsp1_rep	five_prime_UTR	42312184	42312213	.	+	.	Parent=Os01t0959900-02
Chr01	irgsp1_rep	CDS	42312214	42312454	.	+	0	Parent=Os01t0959900-02
Chr01	irgsp1_rep	CDS	42312605	42312660	.	+	2	Parent=Os01t0959900-02
Chr01	irgsp1_rep	CDS	42312787	42312852	.	+	0	Parent=Os01t0959900-02
Chr01	irgsp1_rep	CDS	42312968	42313009	.	+	0	Parent=Os01t0959900-02
Chr01	irgsp1_rep	CDS	42313088	42313147	.	+	0	Parent=Os01t0959900-02
Chr01	irgsp1_rep	CDS	42313245	42313274	.	+	0	Parent=Os01t0959900-02
Chr01	irgsp1_rep	three_prime_UTR	42313275	42313573	.	+	.	Parent=Os01t0959900-02
Chr01	irgsp1_rep	mRNA	42315264	42317679	.	+	.	ID=Os01t0960000-01;Name=Os01t0960000-01;Locus_id=Os01g0960000;Note=Gamma-secretase aspartyl protease complex%2C presenilin enhancer-2 subunit domain containing protein.;Transcript_evidence=AK108183 (DDBJ%2C Best hit);ORF_evidence=B8A9J7 (UniProt);InterPro=Gamma-secretase aspartyl protease complex%2C presenilin enhancer-2 subunit (IPR019379);NIAS_FLcDNA=002-140-B04;Expression=AK108183;TENOR=Os01t0960000-01;KEGG=Os01t0960000-01
Chr01	irgsp1_rep	five_prime_UTR	42315264	42315281	.	+	.	Parent=Os01t0960000-01
Chr01	irgsp1_rep	CDS	42315282	42315588	.	+	0	Parent=Os01t0960000-01
Chr01	irgsp1_rep	CDS	42317213	42317376	.	+	2	Parent=Os01t0960000-01
Chr01	irgsp1_rep	three_prime_UTR	42317377	42317679	.	+	.	Parent=Os01t0960000-01
Chr01	irgsp1_rep	mRNA	42318166	42318238	.	-	.	ID=Os01t0960101-00;Name=Os01t0960101-00;Locus_id=Os01g0960101;Note=Non-protein coding transcript.;Transcript_evidence=X02683 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0960101-00
Chr01	irgsp1_rep	exon	42318166	42318238	.	-	.	Parent=Os01t0960101-00
Chr01	irgsp1_rep	mRNA	42327845	42328651	.	+	.	ID=Os01t0960200-00;Name=Os01t0960200-00;Locus_id=Os01g0960200;Note=Hypothetical conserved gene.;Transcript_evidence=BT019107 (DDBJ);ORF_evidence=NP_001045464.1 (RefSeq);InterPro=Domain of unknown function DUF632 (IPR006867);TENOR=Os01t0960200-00;KEGG=Os01t0960200-00
Chr01	irgsp1_rep	CDS	42327845	42328651	.	+	0	Parent=Os01t0960200-00
Chr01	irgsp1_rep	mRNA	42329287	42335754	.	-	.	ID=Os01t0960300-01;Name=Os01t0960300-01;Locus_id=Os01g0960300;Note=Similar to Glucose inhibited division protein A.;Transcript_evidence=AK100099 (DDBJ%2C Best hit);ORF_evidence=Q1EP54 (UniProt);GO=Biological Process: tRNA wobble uridine modification (GO:0002098),Biological Process: tRNA processing (GO:0008033),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Glucose-inhibited division protein A-related (IPR002218),Glucose-inhibited division protein A (IPR004416);NIAS_FLcDNA=J023004D21;Expression=AK100099;TENOR=Os01t0960300-01;KEGG=Os01t0960300-01
Chr01	irgsp1_rep	five_prime_UTR	42335702	42335754	.	-	.	Parent=Os01t0960300-01
Chr01	irgsp1_rep	CDS	42335524	42335701	.	-	0	Parent=Os01t0960300-01
Chr01	irgsp1_rep	CDS	42335273	42335412	.	-	2	Parent=Os01t0960300-01
Chr01	irgsp1_rep	CDS	42334678	42334769	.	-	0	Parent=Os01t0960300-01
Chr01	irgsp1_rep	CDS	42334417	42334530	.	-	1	Parent=Os01t0960300-01
Chr01	irgsp1_rep	CDS	42333613	42333943	.	-	1	Parent=Os01t0960300-01
Chr01	irgsp1_rep	CDS	42332844	42333023	.	-	0	Parent=Os01t0960300-01
Chr01	irgsp1_rep	CDS	42332617	42332697	.	-	0	Parent=Os01t0960300-01
Chr01	irgsp1_rep	CDS	42332134	42332352	.	-	0	Parent=Os01t0960300-01
Chr01	irgsp1_rep	CDS	42331909	42332051	.	-	0	Parent=Os01t0960300-01
Chr01	irgsp1_rep	CDS	42331118	42331284	.	-	1	Parent=Os01t0960300-01
Chr01	irgsp1_rep	CDS	42330769	42330986	.	-	2	Parent=Os01t0960300-01
Chr01	irgsp1_rep	CDS	42330300	42330392	.	-	0	Parent=Os01t0960300-01
Chr01	irgsp1_rep	CDS	42329753	42329950	.	-	0	Parent=Os01t0960300-01
Chr01	irgsp1_rep	three_prime_UTR	42329287	42329752	.	-	.	Parent=Os01t0960300-01
Chr01	irgsp1_rep	mRNA	42329313	42333846	.	-	.	ID=Os01t0960300-02;Name=Os01t0960300-02;Locus_id=Os01g0960300;Note=Similar to Glucose-inhibited division A family protein.;Transcript_evidence=AK105000 (DDBJ%2C Best hit);ORF_evidence=Q1EP54 (UniProt);GO=Biological Process: tRNA wobble uridine modification (GO:0002098),Biological Process: tRNA processing (GO:0008033),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Glucose-inhibited division protein A-related (IPR002218),Glucose-inhibited division protein A (IPR004416);NIAS_FLcDNA=001-004-C12;Expression=AK105000;TENOR=Os01t0960300-02;KEGG=Os01t0960300-02
Chr01	irgsp1_rep	CDS	42333613	42333846	.	-	0	Parent=Os01t0960300-02
Chr01	irgsp1_rep	CDS	42332844	42333023	.	-	0	Parent=Os01t0960300-02
Chr01	irgsp1_rep	CDS	42332617	42332697	.	-	0	Parent=Os01t0960300-02
Chr01	irgsp1_rep	CDS	42332134	42332352	.	-	0	Parent=Os01t0960300-02
Chr01	irgsp1_rep	CDS	42331909	42332051	.	-	0	Parent=Os01t0960300-02
Chr01	irgsp1_rep	CDS	42331118	42331284	.	-	1	Parent=Os01t0960300-02
Chr01	irgsp1_rep	CDS	42330769	42330986	.	-	2	Parent=Os01t0960300-02
Chr01	irgsp1_rep	CDS	42330300	42330392	.	-	0	Parent=Os01t0960300-02
Chr01	irgsp1_rep	CDS	42329753	42329950	.	-	0	Parent=Os01t0960300-02
Chr01	irgsp1_rep	three_prime_UTR	42329313	42329752	.	-	.	Parent=Os01t0960300-02
Chr01	irgsp1_rep	mRNA	42336300	42348672	.	-	.	ID=Os01t0960400-01;Name=Os01t0960400-01;Locus_id=Os01g0960400;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK111512 (DDBJ%2C Best hit);ORF_evidence=NP_195815.3 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J013001N14;Expression=AK111512;TENOR=Os01t0960400-01;KEGG=Os01t0960400-01
Chr01	irgsp1_rep	five_prime_UTR	42348574	42348672	.	-	.	Parent=Os01t0960400-01
Chr01	irgsp1_rep	five_prime_UTR	42347940	42348026	.	-	.	Parent=Os01t0960400-01
Chr01	irgsp1_rep	CDS	42347846	42347939	.	-	0	Parent=Os01t0960400-01
Chr01	irgsp1_rep	CDS	42347446	42347596	.	-	2	Parent=Os01t0960400-01
Chr01	irgsp1_rep	CDS	42346936	42347007	.	-	1	Parent=Os01t0960400-01
Chr01	irgsp1_rep	CDS	42346748	42346819	.	-	1	Parent=Os01t0960400-01
Chr01	irgsp1_rep	CDS	42346175	42346318	.	-	1	Parent=Os01t0960400-01
Chr01	irgsp1_rep	CDS	42346020	42346091	.	-	1	Parent=Os01t0960400-01
Chr01	irgsp1_rep	CDS	42345872	42345943	.	-	1	Parent=Os01t0960400-01
Chr01	irgsp1_rep	CDS	42345426	42345500	.	-	1	Parent=Os01t0960400-01
Chr01	irgsp1_rep	CDS	42344437	42344505	.	-	1	Parent=Os01t0960400-01
Chr01	irgsp1_rep	CDS	42344247	42344315	.	-	1	Parent=Os01t0960400-01
Chr01	irgsp1_rep	CDS	42344065	42344136	.	-	1	Parent=Os01t0960400-01
Chr01	irgsp1_rep	CDS	42343678	42343764	.	-	1	Parent=Os01t0960400-01
Chr01	irgsp1_rep	CDS	42343524	42343592	.	-	1	Parent=Os01t0960400-01
Chr01	irgsp1_rep	CDS	42341557	42342047	.	-	1	Parent=Os01t0960400-01
Chr01	irgsp1_rep	CDS	42339871	42340020	.	-	2	Parent=Os01t0960400-01
Chr01	irgsp1_rep	CDS	42339464	42339747	.	-	2	Parent=Os01t0960400-01
Chr01	irgsp1_rep	CDS	42338932	42338983	.	-	0	Parent=Os01t0960400-01
Chr01	irgsp1_rep	CDS	42338425	42338675	.	-	2	Parent=Os01t0960400-01
Chr01	irgsp1_rep	CDS	42337887	42338021	.	-	0	Parent=Os01t0960400-01
Chr01	irgsp1_rep	CDS	42336437	42336814	.	-	0	Parent=Os01t0960400-01
Chr01	irgsp1_rep	three_prime_UTR	42336300	42336436	.	-	.	Parent=Os01t0960400-01
Chr01	irgsp1_rep	mRNA	42336327	42344278	.	-	.	ID=Os01t0960400-02;Name=Os01t0960400-02;Locus_id=Os01g0960400;Note=Similar to predicted protein.;Transcript_evidence=AK111586 (DDBJ%2C Best hit);ORF_evidence=B8A9K1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013089M03;Expression=AK111586;TENOR=Os01t0960400-02;KEGG=Os01t0960400-02
Chr01	irgsp1_rep	CDS	42344247	42344278	.	-	0	Parent=Os01t0960400-02
Chr01	irgsp1_rep	CDS	42344065	42344136	.	-	1	Parent=Os01t0960400-02
Chr01	irgsp1_rep	CDS	42343678	42343764	.	-	1	Parent=Os01t0960400-02
Chr01	irgsp1_rep	CDS	42343524	42343592	.	-	1	Parent=Os01t0960400-02
Chr01	irgsp1_rep	CDS	42341557	42342047	.	-	1	Parent=Os01t0960400-02
Chr01	irgsp1_rep	CDS	42339871	42340020	.	-	2	Parent=Os01t0960400-02
Chr01	irgsp1_rep	CDS	42339464	42339747	.	-	2	Parent=Os01t0960400-02
Chr01	irgsp1_rep	CDS	42338932	42338983	.	-	0	Parent=Os01t0960400-02
Chr01	irgsp1_rep	CDS	42338425	42338675	.	-	2	Parent=Os01t0960400-02
Chr01	irgsp1_rep	CDS	42337887	42338021	.	-	0	Parent=Os01t0960400-02
Chr01	irgsp1_rep	CDS	42336437	42336814	.	-	0	Parent=Os01t0960400-02
Chr01	irgsp1_rep	three_prime_UTR	42336327	42336436	.	-	.	Parent=Os01t0960400-02
Chr01	irgsp1_rep	mRNA	42336297	42340697	.	-	.	ID=Os01t0960400-03;Name=Os01t0960400-03;Locus_id=Os01g0960400;Note=Similar to Leucine-rich repeat transmembrane protein kinase.;Transcript_evidence=AK111991 (DDBJ%2C Best hit);ORF_evidence=C6FF66 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=001-033-A10;TENOR=Os01t0960400-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	42340125	42340697	.	-	.	Parent=Os01t0960400-03
Chr01	irgsp1_rep	five_prime_UTR	42339871	42340020	.	-	.	Parent=Os01t0960400-03
Chr01	irgsp1_rep	five_prime_UTR	42339734	42339747	.	-	.	Parent=Os01t0960400-03
Chr01	irgsp1_rep	CDS	42339464	42339733	.	-	0	Parent=Os01t0960400-03
Chr01	irgsp1_rep	CDS	42338932	42338983	.	-	0	Parent=Os01t0960400-03
Chr01	irgsp1_rep	CDS	42338425	42338675	.	-	2	Parent=Os01t0960400-03
Chr01	irgsp1_rep	CDS	42337887	42338021	.	-	0	Parent=Os01t0960400-03
Chr01	irgsp1_rep	CDS	42336437	42336814	.	-	0	Parent=Os01t0960400-03
Chr01	irgsp1_rep	three_prime_UTR	42336297	42336436	.	-	.	Parent=Os01t0960400-03
Chr01	irgsp1_rep	mRNA	42337885	42339733	.	+	.	ID=Os01t0960450-00;Name=Os01t0960450-00;Locus_id=Os01g0960450;Note=Non-protein coding transcript.;Transcript_evidence=AK368632 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0960450-00
Chr01	irgsp1_rep	exon	42337885	42338020	.	+	.	Parent=Os01t0960450-00
Chr01	irgsp1_rep	exon	42338424	42338707	.	+	.	Parent=Os01t0960450-00
Chr01	irgsp1_rep	exon	42339451	42339733	.	+	.	Parent=Os01t0960450-00
Chr01	irgsp1_rep	mRNA	42350945	42355276	.	-	.	ID=Os01t0960500-01;Name=Os01t0960500-01;Locus_id=Os01g0960500;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK065423 (DDBJ%2C Best hit);ORF_evidence=NP_001032132.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Copine (IPR010734),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J013020F11;Expression=AK065423;TENOR=Os01t0960500-01;KEGG=Os01t0960500-01
Chr01	irgsp1_rep	five_prime_UTR	42355025	42355276	.	-	.	Parent=Os01t0960500-01
Chr01	irgsp1_rep	five_prime_UTR	42354492	42354508	.	-	.	Parent=Os01t0960500-01
Chr01	irgsp1_rep	CDS	42354363	42354491	.	-	0	Parent=Os01t0960500-01
Chr01	irgsp1_rep	CDS	42354060	42354144	.	-	0	Parent=Os01t0960500-01
Chr01	irgsp1_rep	CDS	42353796	42353936	.	-	2	Parent=Os01t0960500-01
Chr01	irgsp1_rep	CDS	42353587	42353700	.	-	2	Parent=Os01t0960500-01
Chr01	irgsp1_rep	CDS	42352906	42353003	.	-	2	Parent=Os01t0960500-01
Chr01	irgsp1_rep	CDS	42352755	42352831	.	-	0	Parent=Os01t0960500-01
Chr01	irgsp1_rep	CDS	42352581	42352686	.	-	1	Parent=Os01t0960500-01
Chr01	irgsp1_rep	CDS	42352248	42352375	.	-	0	Parent=Os01t0960500-01
Chr01	irgsp1_rep	CDS	42352016	42352160	.	-	1	Parent=Os01t0960500-01
Chr01	irgsp1_rep	CDS	42351857	42351913	.	-	0	Parent=Os01t0960500-01
Chr01	irgsp1_rep	CDS	42351574	42351657	.	-	0	Parent=Os01t0960500-01
Chr01	irgsp1_rep	three_prime_UTR	42350945	42351573	.	-	.	Parent=Os01t0960500-01
Chr01	irgsp1_rep	mRNA	42358083	42360654	.	-	.	ID=Os01t0960600-01;Name=Os01t0960600-01;Locus_id=Os01g0960600;Note=Hypothetical conserved gene.;Transcript_evidence=AK243103 (DDBJ%2C Best hit);ORF_evidence=B9EWK6 (UniProt);NIAS_FLcDNA=J100025N22;TENOR=Os01t0960600-01;KEGG=Os01t0960600-01
Chr01	irgsp1_rep	five_prime_UTR	42360559	42360654	.	-	.	Parent=Os01t0960600-01
Chr01	irgsp1_rep	CDS	42360292	42360558	.	-	0	Parent=Os01t0960600-01
Chr01	irgsp1_rep	CDS	42359959	42360144	.	-	0	Parent=Os01t0960600-01
Chr01	irgsp1_rep	CDS	42359689	42359790	.	-	0	Parent=Os01t0960600-01
Chr01	irgsp1_rep	CDS	42359553	42359609	.	-	0	Parent=Os01t0960600-01
Chr01	irgsp1_rep	CDS	42359359	42359454	.	-	0	Parent=Os01t0960600-01
Chr01	irgsp1_rep	CDS	42359189	42359281	.	-	0	Parent=Os01t0960600-01
Chr01	irgsp1_rep	CDS	42358947	42359072	.	-	0	Parent=Os01t0960600-01
Chr01	irgsp1_rep	CDS	42358808	42358840	.	-	0	Parent=Os01t0960600-01
Chr01	irgsp1_rep	CDS	42358673	42358723	.	-	0	Parent=Os01t0960600-01
Chr01	irgsp1_rep	CDS	42358459	42358537	.	-	0	Parent=Os01t0960600-01
Chr01	irgsp1_rep	CDS	42358345	42358358	.	-	2	Parent=Os01t0960600-01
Chr01	irgsp1_rep	three_prime_UTR	42358083	42358344	.	-	.	Parent=Os01t0960600-01
Chr01	irgsp1_rep	mRNA	42361401	42363627	.	-	.	ID=Os01t0960800-01;Name=Os01t0960800-01;Locus_id=Os01g0960800;Note=Protein Transporter%2C Pam16 family protein.;Transcript_evidence=AK073977 (DDBJ%2C Best hit);ORF_evidence=B6TGT3 (UniProt);InterPro=Protein Transporter%2C Pam16 (IPR005341);NIAS_FLcDNA=J033075P16;Expression=AK073977;TENOR=Os01t0960800-01;KEGG=Os01t0960800-01
Chr01	irgsp1_rep	five_prime_UTR	42363357	42363627	.	-	.	Parent=Os01t0960800-01
Chr01	irgsp1_rep	CDS	42363354	42363356	.	-	0	Parent=Os01t0960800-01
Chr01	irgsp1_rep	CDS	42363126	42363213	.	-	0	Parent=Os01t0960800-01
Chr01	irgsp1_rep	CDS	42361897	42362027	.	-	2	Parent=Os01t0960800-01
Chr01	irgsp1_rep	CDS	42361634	42361753	.	-	0	Parent=Os01t0960800-01
Chr01	irgsp1_rep	three_prime_UTR	42361401	42361633	.	-	.	Parent=Os01t0960800-01
Chr01	irgsp1_rep	mRNA	42364072	42364905	.	-	.	ID=Os01t0960900-00;Name=Os01t0960900-00;Locus_id=Os01g0960900;Note=Oligopeptide transporter domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q94DP0 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109);TENOR=Os01t0960900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	42364072	42364905	.	-	0	Parent=Os01t0960900-00
Chr01	irgsp1_rep	mRNA	42369770	42370365	.	+	.	ID=Os01t0961000-01;Name=Os01t0961000-01;Locus_id=Os01g0961000;Note=Conserved hypothetical protein.;Transcript_evidence=AK062919 (DDBJ%2C Best hit);ORF_evidence=B8A9K4 (UniProt);NIAS_FLcDNA=001-108-H05;Expression=AK062919;TENOR=Os01t0961000-01;KEGG=Os01t0961000-01
Chr01	irgsp1_rep	five_prime_UTR	42369770	42369967	.	+	.	Parent=Os01t0961000-01
Chr01	irgsp1_rep	CDS	42369968	42370225	.	+	0	Parent=Os01t0961000-01
Chr01	irgsp1_rep	three_prime_UTR	42370226	42370365	.	+	.	Parent=Os01t0961000-01
Chr01	irgsp1_rep	mRNA	42377194	42381519	.	+	.	ID=Os01t0961200-01;Name=Os01t0961200-01;Locus_id=Os01g0961200;Oryzabase Gene Symbol Synonym(s)=OsCBSCBSPB3;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSCBSPB3%2C CBS domain containing protein OsCBSCBSPB3;Note=Cystathionine beta-synthase%2C core domain containing protein.;Transcript_evidence=AK105424 (DDBJ%2C Best hit);ORF_evidence=NP_001148069.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein binding (GO:0005515);InterPro=Phox/Bem1p (IPR000270),Cystathionine beta-synthase%2C core (IPR000644),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=001-124-C05;Oryzabase=10353;Expression=AK105424;TENOR=Os01t0961200-01;KEGG=Os01t0961200-01
Chr01	irgsp1_rep	five_prime_UTR	42377194	42377307	.	+	.	Parent=Os01t0961200-01
Chr01	irgsp1_rep	CDS	42377308	42377450	.	+	0	Parent=Os01t0961200-01
Chr01	irgsp1_rep	CDS	42377588	42377750	.	+	1	Parent=Os01t0961200-01
Chr01	irgsp1_rep	CDS	42378095	42378227	.	+	0	Parent=Os01t0961200-01
Chr01	irgsp1_rep	CDS	42378565	42378735	.	+	2	Parent=Os01t0961200-01
Chr01	irgsp1_rep	CDS	42378853	42378931	.	+	2	Parent=Os01t0961200-01
Chr01	irgsp1_rep	CDS	42379010	42379123	.	+	1	Parent=Os01t0961200-01
Chr01	irgsp1_rep	CDS	42379262	42379328	.	+	1	Parent=Os01t0961200-01
Chr01	irgsp1_rep	CDS	42379434	42379539	.	+	0	Parent=Os01t0961200-01
Chr01	irgsp1_rep	CDS	42379609	42379667	.	+	2	Parent=Os01t0961200-01
Chr01	irgsp1_rep	CDS	42379873	42379976	.	+	0	Parent=Os01t0961200-01
Chr01	irgsp1_rep	CDS	42380066	42380187	.	+	1	Parent=Os01t0961200-01
Chr01	irgsp1_rep	CDS	42380285	42380361	.	+	2	Parent=Os01t0961200-01
Chr01	irgsp1_rep	CDS	42380846	42380935	.	+	0	Parent=Os01t0961200-01
Chr01	irgsp1_rep	CDS	42381033	42381206	.	+	0	Parent=Os01t0961200-01
Chr01	irgsp1_rep	three_prime_UTR	42381207	42381519	.	+	.	Parent=Os01t0961200-01
Chr01	irgsp1_rep	mRNA	42385629	42388987	.	+	.	ID=Os01t0961300-01;Name=Os01t0961300-01;Locus_id=Os01g0961300;Note=Conserved hypothetical protein.;Transcript_evidence=AK068300 (DDBJ%2C Best hit);ORF_evidence=B8A9K5 (UniProt);NIAS_FLcDNA=J013136L14;TENOR=Os01t0961300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	42385629	42385671	.	+	.	Parent=Os01t0961300-01
Chr01	irgsp1_rep	five_prime_UTR	42385762	42385855	.	+	.	Parent=Os01t0961300-01
Chr01	irgsp1_rep	CDS	42385856	42385870	.	+	0	Parent=Os01t0961300-01
Chr01	irgsp1_rep	CDS	42386098	42386166	.	+	0	Parent=Os01t0961300-01
Chr01	irgsp1_rep	CDS	42386277	42386648	.	+	0	Parent=Os01t0961300-01
Chr01	irgsp1_rep	three_prime_UTR	42386649	42386872	.	+	.	Parent=Os01t0961300-01
Chr01	irgsp1_rep	three_prime_UTR	42386949	42387108	.	+	.	Parent=Os01t0961300-01
Chr01	irgsp1_rep	three_prime_UTR	42387189	42387492	.	+	.	Parent=Os01t0961300-01
Chr01	irgsp1_rep	three_prime_UTR	42387578	42387679	.	+	.	Parent=Os01t0961300-01
Chr01	irgsp1_rep	three_prime_UTR	42388461	42388987	.	+	.	Parent=Os01t0961300-01
Chr01	irgsp1_rep	mRNA	42393586	42401178	.	-	.	ID=Os01t0961600-01;Name=Os01t0961600-01;Locus_id=Os01g0961600;Note=Conserved hypothetical protein.;Transcript_evidence=AK071901 (DDBJ%2C Best hit);ORF_evidence=B8A9K6 (UniProt);NIAS_FLcDNA=J013062L08;Expression=AK071901;TENOR=Os01t0961600-01;KEGG=Os01t0961600-01
Chr01	irgsp1_rep	five_prime_UTR	42400879	42401178	.	-	.	Parent=Os01t0961600-01
Chr01	irgsp1_rep	five_prime_UTR	42400604	42400628	.	-	.	Parent=Os01t0961600-01
Chr01	irgsp1_rep	CDS	42400160	42400603	.	-	0	Parent=Os01t0961600-01
Chr01	irgsp1_rep	CDS	42399900	42400082	.	-	0	Parent=Os01t0961600-01
Chr01	irgsp1_rep	CDS	42397140	42397250	.	-	0	Parent=Os01t0961600-01
Chr01	irgsp1_rep	CDS	42397005	42397046	.	-	0	Parent=Os01t0961600-01
Chr01	irgsp1_rep	CDS	42396815	42396910	.	-	0	Parent=Os01t0961600-01
Chr01	irgsp1_rep	CDS	42396653	42396742	.	-	0	Parent=Os01t0961600-01
Chr01	irgsp1_rep	CDS	42396434	42396547	.	-	0	Parent=Os01t0961600-01
Chr01	irgsp1_rep	CDS	42396298	42396330	.	-	0	Parent=Os01t0961600-01
Chr01	irgsp1_rep	CDS	42396157	42396207	.	-	0	Parent=Os01t0961600-01
Chr01	irgsp1_rep	CDS	42396006	42396080	.	-	0	Parent=Os01t0961600-01
Chr01	irgsp1_rep	three_prime_UTR	42396003	42396005	.	-	.	Parent=Os01t0961600-01
Chr01	irgsp1_rep	three_prime_UTR	42393586	42394085	.	-	.	Parent=Os01t0961600-01
Chr01	irgsp1_rep	mRNA	42395716	42401147	.	-	.	ID=Os01t0961600-02;Name=Os01t0961600-02;Locus_id=Os01g0961600;Note=Conserved hypothetical protein.;Transcript_evidence=AK063388 (DDBJ%2C Best hit);ORF_evidence=B8A9K6 (UniProt);NIAS_FLcDNA=001-114-G11;Expression=AK063388;TENOR=Os01t0961600-02;KEGG=Os01t0961600-02
Chr01	irgsp1_rep	five_prime_UTR	42400879	42401147	.	-	.	Parent=Os01t0961600-02
Chr01	irgsp1_rep	five_prime_UTR	42400604	42400628	.	-	.	Parent=Os01t0961600-02
Chr01	irgsp1_rep	CDS	42400160	42400603	.	-	0	Parent=Os01t0961600-02
Chr01	irgsp1_rep	CDS	42399900	42400082	.	-	0	Parent=Os01t0961600-02
Chr01	irgsp1_rep	CDS	42397140	42397250	.	-	0	Parent=Os01t0961600-02
Chr01	irgsp1_rep	CDS	42397005	42397046	.	-	0	Parent=Os01t0961600-02
Chr01	irgsp1_rep	CDS	42396815	42396910	.	-	0	Parent=Os01t0961600-02
Chr01	irgsp1_rep	CDS	42396653	42396742	.	-	0	Parent=Os01t0961600-02
Chr01	irgsp1_rep	CDS	42396434	42396547	.	-	0	Parent=Os01t0961600-02
Chr01	irgsp1_rep	CDS	42396298	42396330	.	-	0	Parent=Os01t0961600-02
Chr01	irgsp1_rep	CDS	42396157	42396207	.	-	0	Parent=Os01t0961600-02
Chr01	irgsp1_rep	CDS	42396006	42396080	.	-	0	Parent=Os01t0961600-02
Chr01	irgsp1_rep	three_prime_UTR	42395716	42396005	.	-	.	Parent=Os01t0961600-02
Chr01	irgsp1_rep	mRNA	42407470	42407811	.	+	.	ID=Os01t0962000-01;Name=Os01t0962000-01;Locus_id=Os01g0962000;Note=Hypothetical conserved gene.;Transcript_evidence=AK059675 (DDBJ%2C Best hit);ORF_evidence=A2WZC9 (UniProt);NIAS_FLcDNA=001-031-G07;Expression=AK059675;TENOR=Os01t0962000-01;KEGG=Os01t0962000-01
Chr01	irgsp1_rep	five_prime_UTR	42407470	42407533	.	+	.	Parent=Os01t0962000-01
Chr01	irgsp1_rep	CDS	42407534	42407749	.	+	0	Parent=Os01t0962000-01
Chr01	irgsp1_rep	three_prime_UTR	42407750	42407811	.	+	.	Parent=Os01t0962000-01
Chr01	irgsp1_rep	mRNA	42411799	42413498	.	+	.	ID=Os01t0962100-01;Name=Os01t0962100-01;Locus_id=Os01g0962100;Note=Conserved hypothetical protein.;Transcript_evidence=AK109813 (DDBJ%2C Best hit);ORF_evidence=A2WZD0 (UniProt);NIAS_FLcDNA=002-147-H03;Expression=AK109813;TENOR=Os01t0962100-01;KEGG=Os01t0962100-01
Chr01	irgsp1_rep	five_prime_UTR	42411799	42411938	.	+	.	Parent=Os01t0962100-01
Chr01	irgsp1_rep	CDS	42411939	42412104	.	+	0	Parent=Os01t0962100-01
Chr01	irgsp1_rep	CDS	42412184	42412365	.	+	2	Parent=Os01t0962100-01
Chr01	irgsp1_rep	CDS	42412453	42412877	.	+	0	Parent=Os01t0962100-01
Chr01	irgsp1_rep	CDS	42412995	42413082	.	+	1	Parent=Os01t0962100-01
Chr01	irgsp1_rep	three_prime_UTR	42413083	42413498	.	+	.	Parent=Os01t0962100-01
Chr01	irgsp1_rep	mRNA	42413471	42416572	.	-	.	ID=Os01t0962200-01;Name=Os01t0962200-01;Locus_id=Os01g0962200;Note=Similar to Membrane protein.;Transcript_evidence=AK067659 (DDBJ%2C Best hit);ORF_evidence=B6T2L1 (UniProt);GO=Biological Process: ceramide metabolic process (GO:0006672),Cellular Component: integral to membrane (GO:0016021),Molecular Function: hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds%2C in linear amides (GO:0016811);InterPro=Ceramidase (IPR008901);NIAS_FLcDNA=J013114K13;Expression=AK067659;TENOR=Os01t0962200-01;KEGG=Os01t0962200-01
Chr01	irgsp1_rep	five_prime_UTR	42416476	42416572	.	-	.	Parent=Os01t0962200-01
Chr01	irgsp1_rep	CDS	42416337	42416475	.	-	0	Parent=Os01t0962200-01
Chr01	irgsp1_rep	CDS	42415687	42415786	.	-	2	Parent=Os01t0962200-01
Chr01	irgsp1_rep	CDS	42415486	42415606	.	-	1	Parent=Os01t0962200-01
Chr01	irgsp1_rep	CDS	42414987	42415109	.	-	0	Parent=Os01t0962200-01
Chr01	irgsp1_rep	CDS	42414773	42414893	.	-	0	Parent=Os01t0962200-01
Chr01	irgsp1_rep	CDS	42414324	42414483	.	-	2	Parent=Os01t0962200-01
Chr01	irgsp1_rep	CDS	42413668	42413788	.	-	1	Parent=Os01t0962200-01
Chr01	irgsp1_rep	three_prime_UTR	42413471	42413667	.	-	.	Parent=Os01t0962200-01
Chr01	irgsp1_rep	mRNA	42417731	42418739	.	+	.	ID=Os01t0962300-00;Name=Os01t0962300-00;Locus_id=Os01g0962300;Note=Similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (EC 3.6.3.14) (V- ATPase 16 kDa proteolipid subunit) (Fragment).;Transcript_evidence=AK360833 (DDBJ);ORF_evidence=E5G3F9 (UniProt);GO=Biological Process: ATP hydrolysis coupled proton transport (GO:0015991),Cellular Component: proton-transporting two-sector ATPase complex%2C proton-transporting domain (GO:0033177),Cellular Component: proton-transporting V-type ATPase%2C V0 domain (GO:0033179),Molecular Function: hydrogen ion transmembrane transporter activity (GO:0015078);InterPro=ATPase%2C V0 complex%2C proteolipid subunit C (IPR000245),ATPase%2C F0/V0 complex%2C subunit C (IPR002379),ATPase%2C V0 complex%2C proteolipid subunit C%2C eukaryotic (IPR011555);TENOR=Os01t0962300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	42417731	42417815	.	+	.	Parent=Os01t0962300-00
Chr01	irgsp1_rep	CDS	42417816	42417894	.	+	0	Parent=Os01t0962300-00
Chr01	irgsp1_rep	CDS	42418321	42418739	.	+	2	Parent=Os01t0962300-00
Chr01	irgsp1_rep	mRNA	42419408	42421376	.	-	.	ID=Os01t0962400-01;Name=Os01t0962400-01;Locus_id=Os01g0962400;Note=Ubiquitin-like%2C Ufm1 domain containing protein.;Transcript_evidence=AK059165 (DDBJ%2C Best hit);ORF_evidence=NP_001151442.1 (RefSeq);InterPro=Ubiquitin-fold modifier 1 (IPR005375);NIAS_FLcDNA=001-023-E01;Expression=AK059165;TENOR=Os01t0962400-01;KEGG=Os01t0962400-01
Chr01	irgsp1_rep	five_prime_UTR	42421239	42421376	.	-	.	Parent=Os01t0962400-01
Chr01	irgsp1_rep	CDS	42421141	42421238	.	-	0	Parent=Os01t0962400-01
Chr01	irgsp1_rep	CDS	42420918	42421015	.	-	1	Parent=Os01t0962400-01
Chr01	irgsp1_rep	CDS	42420118	42420150	.	-	2	Parent=Os01t0962400-01
Chr01	irgsp1_rep	CDS	42419549	42419628	.	-	2	Parent=Os01t0962400-01
Chr01	irgsp1_rep	three_prime_UTR	42419408	42419548	.	-	.	Parent=Os01t0962400-01
Chr01	irgsp1_rep	mRNA	42421672	42424864	.	-	.	ID=Os01t0962500-01;Name=Os01t0962500-01;Locus_id=Os01g0962500;Note=Zinc finger%2C HIT-type domain containing protein.;Transcript_evidence=AK073163 (DDBJ%2C Best hit);ORF_evidence=A2WZD4 (UniProt);InterPro=Zinc finger%2C HIT-type (IPR007529);NIAS_FLcDNA=J033024I07;TENOR=Os01t0962500-01
Chr01	irgsp1_rep	five_prime_UTR	42424683	42424864	.	-	.	Parent=Os01t0962500-01
Chr01	irgsp1_rep	CDS	42424427	42424682	.	-	0	Parent=Os01t0962500-01
Chr01	irgsp1_rep	CDS	42424101	42424314	.	-	2	Parent=Os01t0962500-01
Chr01	irgsp1_rep	CDS	42423581	42423649	.	-	1	Parent=Os01t0962500-01
Chr01	irgsp1_rep	CDS	42423061	42423193	.	-	1	Parent=Os01t0962500-01
Chr01	irgsp1_rep	CDS	42421987	42422970	.	-	0	Parent=Os01t0962500-01
Chr01	irgsp1_rep	three_prime_UTR	42421672	42421986	.	-	.	Parent=Os01t0962500-01
Chr01	irgsp1_rep	mRNA	42421672	42424720	.	-	.	ID=Os01t0962500-02;Name=Os01t0962500-02;Locus_id=Os01g0962500;Note=Zinc finger%2C HIT-type domain containing protein.;Transcript_evidence=AK105822 (DDBJ%2C Best hit);ORF_evidence=A2WZD4 (UniProt);InterPro=Zinc finger%2C HIT-type (IPR007529);NIAS_FLcDNA=001-203-D08;TENOR=Os01t0962500-02
Chr01	irgsp1_rep	five_prime_UTR	42424683	42424720	.	-	.	Parent=Os01t0962500-02
Chr01	irgsp1_rep	CDS	42424427	42424682	.	-	0	Parent=Os01t0962500-02
Chr01	irgsp1_rep	CDS	42424101	42424314	.	-	2	Parent=Os01t0962500-02
Chr01	irgsp1_rep	CDS	42423581	42423649	.	-	1	Parent=Os01t0962500-02
Chr01	irgsp1_rep	CDS	42423061	42423193	.	-	1	Parent=Os01t0962500-02
Chr01	irgsp1_rep	CDS	42421987	42422970	.	-	0	Parent=Os01t0962500-02
Chr01	irgsp1_rep	three_prime_UTR	42421672	42421986	.	-	.	Parent=Os01t0962500-02
Chr01	irgsp1_rep	mRNA	42425152	42427345	.	-	.	ID=Os01t0962600-01;Name=Os01t0962600-01;Locus_id=Os01g0962600;Oryzabase Gene Symbol Synonym(s)=RPS10%2C OsRPS10;Oryzabase Gene Name Synonym(s)=ribosomal protein S10%2C ribosomal protein small subunit 10;Note=Similar to 40S ribosomal protein S10-1.;Transcript_evidence=AK073846 (DDBJ%2C Best hit);ORF_evidence=NP_001152734.1 (RefSeq);InterPro=Plectin/S10%2C N-terminal (IPR005326);NIAS_FLcDNA=J033070I05;Oryzabase=22175;Expression=AK073846;TENOR=Os01t0962600-01;KEGG=Os01t0962600-01
Chr01	irgsp1_rep	five_prime_UTR	42427259	42427345	.	-	.	Parent=Os01t0962600-01
Chr01	irgsp1_rep	CDS	42427256	42427258	.	-	0	Parent=Os01t0962600-01
Chr01	irgsp1_rep	CDS	42427101	42427149	.	-	0	Parent=Os01t0962600-01
Chr01	irgsp1_rep	CDS	42426468	42426750	.	-	2	Parent=Os01t0962600-01
Chr01	irgsp1_rep	CDS	42425849	42425984	.	-	1	Parent=Os01t0962600-01
Chr01	irgsp1_rep	CDS	42425424	42425492	.	-	0	Parent=Os01t0962600-01
Chr01	irgsp1_rep	three_prime_UTR	42425152	42425423	.	-	.	Parent=Os01t0962600-01
Chr01	irgsp1_rep	mRNA	42425849	42426751	.	+	.	ID=Os01t0962650-00;Name=Os01t0962650-00;Locus_id=Os01g0962650;Note=Hypothetical gene.;Transcript_evidence=BT019280 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0962650-00;KEGG=Os01t0962650-00
Chr01	irgsp1_rep	five_prime_UTR	42425849	42425856	.	+	.	Parent=Os01t0962650-00
Chr01	irgsp1_rep	CDS	42425857	42425959	.	+	0	Parent=Os01t0962650-00
Chr01	irgsp1_rep	CDS	42426438	42426652	.	+	2	Parent=Os01t0962650-00
Chr01	irgsp1_rep	three_prime_UTR	42426653	42426751	.	+	.	Parent=Os01t0962650-00
Chr01	irgsp1_rep	mRNA	42429502	42432547	.	+	.	ID=Os01t0962700-01;Name=Os01t0962700-01;Locus_id=Os01g0962700;Oryzabase Gene Symbol Synonym(s)=prx20;Oryzabase Gene Name Synonym(s)=class III peroxidase 20;Note=Similar to Peroxidase 12 precursor (EC 1.11.1.7) (Atperox P12) (PRXR6) (ATP4a).;Transcript_evidence=AK104420 (DDBJ%2C Best hit),AK073009 (DDBJ%2C Best hit),AK104065 (DDBJ%2C Best hit),AK109340 (DDBJ%2C Best hit),AK119199 (DDBJ%2C Best hit);ORF_evidence=Q5U1S3 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Twin-arginine translocation pathway%2C signal sequence (IPR006311),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=006-205-C03,J023145L12,001-025-F04,006-202-E11,001-041-D02;Oryzabase=14547;TENOR=Os01t0962700-01
Chr01	irgsp1_rep	five_prime_UTR	42429502	42429585	.	+	.	Parent=Os01t0962700-01
Chr01	irgsp1_rep	CDS	42429586	42430077	.	+	0	Parent=Os01t0962700-01
Chr01	irgsp1_rep	CDS	42431727	42432368	.	+	0	Parent=Os01t0962700-01
Chr01	irgsp1_rep	three_prime_UTR	42432369	42432547	.	+	.	Parent=Os01t0962700-01
Chr01	irgsp1_rep	mRNA	42436589	42436852	.	+	.	ID=Os01t0962900-00;Name=Os01t0962900-00;Locus_id=Os01g0962900;Oryzabase Gene Symbol Synonym(s)=prx21;Oryzabase Gene Name Synonym(s)=class III peroxidase 21;Note=Similar to Cationic peroxidase SPC4 (Fragment).;Transcript_evidence=ab initio prediction;ORF_evidence=P84516 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidase%2C active site (IPR019794);Oryzabase=14548;TENOR=Os01t0962900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	42436589	42436852	.	+	0	Parent=Os01t0962900-00
Chr01	irgsp1_rep	mRNA	42441660	42442936	.	+	.	ID=Os01t0963000-01;Name=Os01t0963000-01;Locus_id=Os01g0963000;Oryzabase Gene Symbol Synonym(s)=prx22%2C OsPRX22;Oryzabase Gene Name Synonym(s)=class III peroxidase 22%2C peroxidase BP1;Note=Similar to Peroxidase BP 1 precursor.;Transcript_evidence=AK061131 (DDBJ%2C Best hit),AK102172 (DDBJ%2C Best hit),AK109480 (DDBJ%2C Best hit);ORF_evidence=Q5U1S3 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=006-208-A02,J033086I12,001-201-A07;Oryzabase=14549;Expression=AK061131;TENOR=Os01t0963000-01;KEGG=Os01t0963000-01
Chr01	irgsp1_rep	five_prime_UTR	42441660	42441723	.	+	.	Parent=Os01t0963000-01
Chr01	irgsp1_rep	CDS	42441724	42442794	.	+	0	Parent=Os01t0963000-01
Chr01	irgsp1_rep	three_prime_UTR	42442795	42442936	.	+	.	Parent=Os01t0963000-01
Chr01	irgsp1_rep	mRNA	42441701	42442930	.	+	.	ID=Os01t0963000-04;Name=Os01t0963000-04;Locus_id=Os01g0963000;Oryzabase Gene Symbol Synonym(s)=prx22%2C OsPRX22;Oryzabase Gene Name Synonym(s)=class III peroxidase 22%2C peroxidase BP1;Note=Similar to Peroxidase BP 1 precursor.;Transcript_evidence=AK104277 (DDBJ%2C Best hit);ORF_evidence=Q5U1S3 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=001-003-A06;Oryzabase=14549;Expression=AK104277;TENOR=Os01t0963000-04;KEGG=Os01t0963000-04
Chr01	irgsp1_rep	five_prime_UTR	42441701	42441723	.	+	.	Parent=Os01t0963000-04
Chr01	irgsp1_rep	CDS	42441724	42442794	.	+	0	Parent=Os01t0963000-04
Chr01	irgsp1_rep	three_prime_UTR	42442795	42442930	.	+	.	Parent=Os01t0963000-04
Chr01	irgsp1_rep	mRNA	42447928	42450912	.	-	.	ID=Os01t0963300-01;Name=Os01t0963300-01;Locus_id=Os01g0963300;Note=Similar to Syntaxin 61 (AtSYP61) (Osmotic stess-sensitive mutant 1).;Transcript_evidence=AK067544 (DDBJ%2C Best hit);ORF_evidence=NP_564310.1 (RefSeq);GO=Biological Process: vesicle-mediated transport (GO:0016192),Biological Process: Golgi vesicle transport (GO:0048193),Cellular Component: membrane (GO:0016020),Molecular Function: protein binding (GO:0005515);InterPro=Target SNARE coiled-coil domain (IPR000727),t-SNARE (IPR010989),Syntaxin 6%2C N-terminal (IPR015260);NIAS_FLcDNA=J013111B15;Expression=AK067544;TENOR=Os01t0963300-01;KEGG=Os01t0963300-01
Chr01	irgsp1_rep	five_prime_UTR	42450795	42450912	.	-	.	Parent=Os01t0963300-01
Chr01	irgsp1_rep	CDS	42450741	42450794	.	-	0	Parent=Os01t0963300-01
Chr01	irgsp1_rep	CDS	42449739	42449852	.	-	0	Parent=Os01t0963300-01
Chr01	irgsp1_rep	CDS	42449465	42449578	.	-	0	Parent=Os01t0963300-01
Chr01	irgsp1_rep	CDS	42448984	42449138	.	-	0	Parent=Os01t0963300-01
Chr01	irgsp1_rep	CDS	42448637	42448727	.	-	1	Parent=Os01t0963300-01
Chr01	irgsp1_rep	CDS	42448407	42448472	.	-	0	Parent=Os01t0963300-01
Chr01	irgsp1_rep	CDS	42448047	42448157	.	-	0	Parent=Os01t0963300-01
Chr01	irgsp1_rep	three_prime_UTR	42447928	42448046	.	-	.	Parent=Os01t0963300-01
Chr01	irgsp1_rep	mRNA	42448946	42449672	.	+	.	ID=Os01t0963350-00;Name=Os01t0963350-00;Locus_id=Os01g0963350;Note=Non-protein coding transcript.;Transcript_evidence=EU951037 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0963350-00
Chr01	irgsp1_rep	exon	42448946	42449266	.	+	.	Parent=Os01t0963350-00
Chr01	irgsp1_rep	exon	42449361	42449672	.	+	.	Parent=Os01t0963350-00
Chr01	irgsp1_rep	mRNA	42451284	42454309	.	+	.	ID=Os01t0963400-01;Name=Os01t0963400-01;Locus_id=Os01g0963400;Note=Thioredoxin family protein.;Transcript_evidence=AK062343 (DDBJ%2C Best hit);ORF_evidence=NP_177802.2 (RefSeq);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Thioredoxin (IPR005746),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766),Thioredoxin%2C conserved site (IPR017937);NIAS_FLcDNA=001-101-F04;Expression=AK062343;TENOR=Os01t0963400-01;KEGG=Os01t0963400-01
Chr01	irgsp1_rep	CDS	42451284	42451319	.	+	0	Parent=Os01t0963400-01
Chr01	irgsp1_rep	CDS	42452029	42452117	.	+	0	Parent=Os01t0963400-01
Chr01	irgsp1_rep	CDS	42452711	42452888	.	+	1	Parent=Os01t0963400-01
Chr01	irgsp1_rep	CDS	42453007	42453072	.	+	0	Parent=Os01t0963400-01
Chr01	irgsp1_rep	three_prime_UTR	42453073	42453080	.	+	.	Parent=Os01t0963400-01
Chr01	irgsp1_rep	three_prime_UTR	42454037	42454309	.	+	.	Parent=Os01t0963400-01
Chr01	irgsp1_rep	mRNA	42460555	42461946	.	+	.	ID=Os01t0963600-01;Name=Os01t0963600-01;Locus_id=Os01g0963600;CGSNL Gene Symbol=ASR2;CGSNL Gene Name=ABSCISIC ACID-STRESS-RIPENING-INDUCIBLE 2 PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsAsr2%2C OsASR4%2C OsASR6;Oryzabase Gene Name Synonym(s)=Abiotic Stress Responsive 4%2C "ABA-%2C stress and ripening-induced protein 6";Note=ABA/WDS induced protein family protein.;Transcript_evidence=AK060804 (DDBJ%2C Best hit),AK065858 (DDBJ%2C Best hit),AK104613 (DDBJ%2C Best hit);ORF_evidence=NP_001158953.1 (RefSeq);GO=Biological Process: response to stress (GO:0006950);InterPro=ABA/WDS induced protein (IPR003496);NIAS_FLcDNA=001-033-F08,J013041E22,006-309-D08;Oryzabase=8405;TENOR=Os01t0963600-01
Chr01	irgsp1_rep	five_prime_UTR	42460555	42460634	.	+	.	Parent=Os01t0963600-01
Chr01	irgsp1_rep	CDS	42460635	42460979	.	+	0	Parent=Os01t0963600-01
Chr01	irgsp1_rep	CDS	42461420	42461623	.	+	0	Parent=Os01t0963600-01
Chr01	irgsp1_rep	three_prime_UTR	42461624	42461946	.	+	.	Parent=Os01t0963600-01
Chr01	irgsp1_rep	mRNA	42470362	42472047	.	+	.	ID=Os01t0963800-01;Name=Os01t0963800-01;Locus_id=Os01g0963800;Note=Conserved hypothetical protein.;Transcript_evidence=AK107518 (DDBJ%2C Best hit);ORF_evidence=A3A1T9 (UniProt);NIAS_FLcDNA=002-129-F06;TENOR=Os01t0963800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	42470362	42470362	.	+	.	Parent=Os01t0963800-01
Chr01	irgsp1_rep	CDS	42470363	42470449	.	+	0	Parent=Os01t0963800-01
Chr01	irgsp1_rep	CDS	42470909	42471259	.	+	0	Parent=Os01t0963800-01
Chr01	irgsp1_rep	CDS	42471752	42471850	.	+	0	Parent=Os01t0963800-01
Chr01	irgsp1_rep	three_prime_UTR	42471851	42472047	.	+	.	Parent=Os01t0963800-01
Chr01	irgsp1_rep	mRNA	42479692	42483339	.	-	.	ID=Os01t0964000-01;Name=Os01t0964000-01;Locus_id=Os01g0964000;Note=Similar to VAMP-like protein YKT61 (AtYKT61) (Geranylgeranylated protein 1) (AtGP1).;Transcript_evidence=AK073599 (DDBJ%2C Best hit);ORF_evidence=NP_200614.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: integral to membrane (GO:0016021);InterPro=Synaptobrevin (IPR001388),Longin (IPR010908),Longin-like (IPR011012);NIAS_FLcDNA=J033050J23;TENOR=Os01t0964000-01
Chr01	irgsp1_rep	five_prime_UTR	42483186	42483339	.	-	.	Parent=Os01t0964000-01
Chr01	irgsp1_rep	CDS	42482948	42483185	.	-	0	Parent=Os01t0964000-01
Chr01	irgsp1_rep	CDS	42482771	42482868	.	-	2	Parent=Os01t0964000-01
Chr01	irgsp1_rep	CDS	42482250	42482354	.	-	0	Parent=Os01t0964000-01
Chr01	irgsp1_rep	CDS	42481026	42481091	.	-	0	Parent=Os01t0964000-01
Chr01	irgsp1_rep	CDS	42480420	42480506	.	-	0	Parent=Os01t0964000-01
Chr01	irgsp1_rep	CDS	42479951	42480001	.	-	0	Parent=Os01t0964000-01
Chr01	irgsp1_rep	three_prime_UTR	42479692	42479950	.	-	.	Parent=Os01t0964000-01
Chr01	irgsp1_rep	mRNA	42479710	42483308	.	-	.	ID=Os01t0964000-02;Name=Os01t0964000-02;Locus_id=Os01g0964000;Note=Similar to VAMP-like protein YKT61 (AtYKT61) (Geranylgeranylated protein 1) (AtGP1).;Transcript_evidence=AK104012 (DDBJ%2C Best hit),AK104190 (DDBJ%2C Best hit);ORF_evidence=NP_200614.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: integral to membrane (GO:0016021);InterPro=Synaptobrevin (IPR001388),Longin (IPR010908),Longin-like (IPR011012);NIAS_FLcDNA=001-007-D09,006-303-C07;TENOR=Os01t0964000-02
Chr01	irgsp1_rep	five_prime_UTR	42483186	42483308	.	-	.	Parent=Os01t0964000-02
Chr01	irgsp1_rep	CDS	42482948	42483185	.	-	0	Parent=Os01t0964000-02
Chr01	irgsp1_rep	CDS	42482771	42482868	.	-	2	Parent=Os01t0964000-02
Chr01	irgsp1_rep	CDS	42482250	42482354	.	-	0	Parent=Os01t0964000-02
Chr01	irgsp1_rep	CDS	42481026	42481091	.	-	0	Parent=Os01t0964000-02
Chr01	irgsp1_rep	CDS	42480420	42480506	.	-	0	Parent=Os01t0964000-02
Chr01	irgsp1_rep	CDS	42479951	42480001	.	-	0	Parent=Os01t0964000-02
Chr01	irgsp1_rep	three_prime_UTR	42479710	42479950	.	-	.	Parent=Os01t0964000-02
Chr01	irgsp1_rep	mRNA	42484125	42487406	.	-	.	ID=Os01t0964133-01;Name=Os01t0964133-01;Locus_id=Os01g0964133;Note=Similar to Actin.;Transcript_evidence=AK243651 (DDBJ%2C Best hit);ORF_evidence=Q8H1L9 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Actin-like (IPR004000),Actin%2C conserved site (IPR004001),Actin/actin-like conserved site (IPR020902);NIAS_FLcDNA=J100088I07;TENOR=Os01t0964133-01;KEGG=Os01t0964133-01
Chr01	irgsp1_rep	five_prime_UTR	42487312	42487406	.	-	.	Parent=Os01t0964133-01
Chr01	irgsp1_rep	five_prime_UTR	42486003	42486018	.	-	.	Parent=Os01t0964133-01
Chr01	irgsp1_rep	CDS	42485943	42486002	.	-	0	Parent=Os01t0964133-01
Chr01	irgsp1_rep	CDS	42485463	42485856	.	-	0	Parent=Os01t0964133-01
Chr01	irgsp1_rep	CDS	42484632	42485245	.	-	2	Parent=Os01t0964133-01
Chr01	irgsp1_rep	CDS	42484409	42484474	.	-	0	Parent=Os01t0964133-01
Chr01	irgsp1_rep	three_prime_UTR	42484125	42484408	.	-	.	Parent=Os01t0964133-01
Chr01	irgsp1_rep	mRNA	42484394	42486003	.	+	.	ID=Os01t0964266-00;Name=Os01t0964266-00;Locus_id=Os01g0964266;Note=Hypothetical gene.;Transcript_evidence=BT018641 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0964266-00;KEGG=Os01t0964266-00
Chr01	irgsp1_rep	five_prime_UTR	42484394	42484399	.	+	.	Parent=Os01t0964266-00
Chr01	irgsp1_rep	CDS	42484400	42484476	.	+	0	Parent=Os01t0964266-00
Chr01	irgsp1_rep	CDS	42484625	42484940	.	+	1	Parent=Os01t0964266-00
Chr01	irgsp1_rep	three_prime_UTR	42484941	42485231	.	+	.	Parent=Os01t0964266-00
Chr01	irgsp1_rep	three_prime_UTR	42485448	42485855	.	+	.	Parent=Os01t0964266-00
Chr01	irgsp1_rep	three_prime_UTR	42485942	42486003	.	+	.	Parent=Os01t0964266-00
Chr01	irgsp1_rep	mRNA	42488143	42488813	.	-	.	ID=Os01t0964333-00;Name=Os01t0964333-00;Locus_id=Os01g0964333;Note=Hypothetical protein.;Transcript_evidence=AK362461 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0964333-00
Chr01	irgsp1_rep	five_prime_UTR	42488788	42488813	.	-	.	Parent=Os01t0964333-00
Chr01	irgsp1_rep	CDS	42488460	42488787	.	-	0	Parent=Os01t0964333-00
Chr01	irgsp1_rep	CDS	42488143	42488259	.	-	2	Parent=Os01t0964333-00
Chr01	irgsp1_rep	mRNA	42526878	42533953	.	-	.	ID=Os01t0964400-00;Name=Os01t0964400-00;Locus_id=Os01g0964400;CGSNL Gene Symbol=RLCK56;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 56;Oryzabase Gene Symbol Synonym(s)=OsRLCK56;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 56;Note=S-locus glycoprotein domain containing protein.;Transcript_evidence=AK353931 (DDBJ);ORF_evidence=A2WZE9 (UniProt);GO=Biological Process: recognition of pollen (GO:0048544),Molecular Function: sugar binding (GO:0005529);InterPro=S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480);Oryzabase=18772;TENOR=Os01t0964400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	42532595	42533953	.	-	0	Parent=Os01t0964400-00
Chr01	irgsp1_rep	three_prime_UTR	42532199	42532594	.	-	.	Parent=Os01t0964400-00
Chr01	irgsp1_rep	three_prime_UTR	42526878	42527543	.	-	.	Parent=Os01t0964400-00
Chr01	irgsp1_rep	mRNA	42541334	42544499	.	+	.	ID=Os01t0964800-01;Name=Os01t0964800-01;Locus_id=Os01g0964800;CGSNL Gene Symbol=DLN38;CGSNL Gene Name=DLN REPRESSOR 38;Oryzabase Gene Symbol Synonym(s)=OsDLN38;Oryzabase Gene Name Synonym(s)=DLN repressor 38%2C DLN motif protein 38;Note=Similar to PRAF1%3B Ran GTPase binding / Chromatin binding / zinc ion binding.;Transcript_evidence=AK107433 (DDBJ%2C Best hit);ORF_evidence=NP_565144.1 (RefSeq);GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C FYVE-type (IPR000306),Regulator of Chromosome condensation%2C RCC1 (IPR000408),Regulator of Chromosome condensation/beta-lactamase-inhibitor protein II (IPR009091),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C FYVE-related (IPR017455);NIAS_FLcDNA=002-128-A09;Oryzabase=23163;TENOR=Os01t0964800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	42541334	42541690	.	+	.	Parent=Os01t0964800-01
Chr01	irgsp1_rep	CDS	42541691	42541871	.	+	0	Parent=Os01t0964800-01
Chr01	irgsp1_rep	CDS	42542944	42544499	.	+	2	Parent=Os01t0964800-01
Chr01	irgsp1_rep	mRNA	42547600	42548935	.	+	.	ID=Os01t0964900-00;Name=Os01t0964900-00;Locus_id=Os01g0964900;Note=Similar to Mitochondrial carrier protein-like.;Transcript_evidence=CT834795 (DDBJ%2C Best hit);ORF_evidence=Q5JJW1 (UniProt);InterPro=Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);TENOR=Os01t0964900-00;KEGG=Os01t0964900-00
Chr01	irgsp1_rep	five_prime_UTR	42547600	42547661	.	+	.	Parent=Os01t0964900-00
Chr01	irgsp1_rep	CDS	42547662	42548783	.	+	0	Parent=Os01t0964900-00
Chr01	irgsp1_rep	three_prime_UTR	42548784	42548935	.	+	.	Parent=Os01t0964900-00
Chr01	irgsp1_rep	mRNA	42549567	42556862	.	-	.	ID=Os01t0965000-00;Name=Os01t0965000-00;Locus_id=Os01g0965000;Note=Similar to DNA-directed RNA polymerase.;Transcript_evidence=ab initio prediction;ORF_evidence=B9EWM0 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Biological Process: amine metabolic process (GO:0009308),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899),Molecular Function: copper ion binding (GO:0005507),Molecular Function: quinone binding (GO:0048038);InterPro=RNA polymerase%2C alpha subunit (IPR000722),RNA polymerase%2C N-terminal (IPR006592),RNA polymerase Rpb1%2C domain 1 (IPR007080),Copper amine oxidase%2C N2/N3-terminal (IPR015801);TENOR=Os01t0965000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	42556764	42556862	.	-	0	Parent=Os01t0965000-00
Chr01	irgsp1_rep	CDS	42556527	42556671	.	-	0	Parent=Os01t0965000-00
Chr01	irgsp1_rep	CDS	42556151	42556266	.	-	2	Parent=Os01t0965000-00
Chr01	irgsp1_rep	CDS	42555708	42555878	.	-	0	Parent=Os01t0965000-00
Chr01	irgsp1_rep	CDS	42555389	42555547	.	-	0	Parent=Os01t0965000-00
Chr01	irgsp1_rep	CDS	42555121	42555273	.	-	0	Parent=Os01t0965000-00
Chr01	irgsp1_rep	CDS	42553425	42555029	.	-	0	Parent=Os01t0965000-00
Chr01	irgsp1_rep	CDS	42553115	42553284	.	-	0	Parent=Os01t0965000-00
Chr01	irgsp1_rep	CDS	42552767	42552827	.	-	1	Parent=Os01t0965000-00
Chr01	irgsp1_rep	CDS	42552558	42552685	.	-	0	Parent=Os01t0965000-00
Chr01	irgsp1_rep	CDS	42552109	42552278	.	-	1	Parent=Os01t0965000-00
Chr01	irgsp1_rep	CDS	42551482	42552011	.	-	2	Parent=Os01t0965000-00
Chr01	irgsp1_rep	CDS	42551243	42551386	.	-	0	Parent=Os01t0965000-00
Chr01	irgsp1_rep	CDS	42550335	42551158	.	-	0	Parent=Os01t0965000-00
Chr01	irgsp1_rep	CDS	42550085	42550193	.	-	1	Parent=Os01t0965000-00
Chr01	irgsp1_rep	CDS	42549567	42549632	.	-	0	Parent=Os01t0965000-00
Chr01	irgsp1_rep	mRNA	42553462	42553750	.	+	.	ID=Os01t0965101-00;Name=Os01t0965101-00;Locus_id=Os01g0965101;Note=Non-protein coding transcript.;Transcript_evidence=EU944670 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0965101-00
Chr01	irgsp1_rep	exon	42553462	42553750	.	+	.	Parent=Os01t0965101-00
Chr01	irgsp1_rep	mRNA	42561890	42562508	.	+	.	ID=Os01t0965201-01;Name=Os01t0965201-01;Locus_id=Os01g0965201;Note=Non-protein coding transcript.;Transcript_evidence=AK111057 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-175-D02;TENOR=Os01t0965201-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	exon	42561890	42562508	.	+	.	Parent=Os01t0965201-01
Chr01	irgsp1_rep	mRNA	42562927	42568193	.	-	.	ID=Os01t0965300-00;Name=Os01t0965300-00;Locus_id=Os01g0965300;Note=Hypothetical protein.;Transcript_evidence=EU955574 (DDBJ);ORF_evidence=longestORF;Oryzabase=22553;TENOR=Os01t0965300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	42568090	42568193	.	-	.	Parent=Os01t0965300-00
Chr01	irgsp1_rep	CDS	42567853	42568089	.	-	0	Parent=Os01t0965300-00
Chr01	irgsp1_rep	CDS	42562927	42563074	.	-	0	Parent=Os01t0965300-00
Chr01	irgsp1_rep	mRNA	42562823	42566993	.	+	.	ID=Os01t0965400-01;Name=Os01t0965400-01;Locus_id=Os01g0965400;RAP-DB Gene Symbol Synonym(s)=YGL8;RAP-DB Gene Name Synonym(s)=yellow-green leaf 8;CGSNL Gene Symbol=YGL8;CGSNL Gene Name=YELLOW-GREEN LEAF 8;Oryzabase Gene Name Synonym(s)=yellow green leaf 8;Note=Chloroplast-targeted UMP kinase%2C Regulation of leaf colour;Transcript_evidence=AK069647,AK104789;ORF_evidence=Q5JJV9;GO=Biological Process: pyrimidine nucleotide biosynthetic process (GO:0006221),Molecular Function: uridylate kinase activity (GO:0009041),Molecular Function: UMP kinase activity (GO:0033862),Cellular Component: cytoplasm (GO:0005737);InterPro=Uridylate kinase (IPR011817),Uridylate kinase%2C bacteria (IPR015963),Aspartate/glutamate/uridylate kinase (IPR001048);NIAS_FLcDNA=J023027E20, 001-039-E08;Manual Curation=June 16%2C 2016;Literature_PMID=27297403;Oryzabase=22137;TENOR=Os01t0965400-01
Chr01	irgsp1_rep	five_prime_UTR	42562823	42562874	.	+	.	Parent=Os01t0965400-01
Chr01	irgsp1_rep	CDS	42562875	42563086	.	+	0	Parent=Os01t0965400-01
Chr01	irgsp1_rep	CDS	42564294	42564438	.	+	1	Parent=Os01t0965400-01
Chr01	irgsp1_rep	CDS	42564527	42564580	.	+	0	Parent=Os01t0965400-01
Chr01	irgsp1_rep	CDS	42564811	42564902	.	+	0	Parent=Os01t0965400-01
Chr01	irgsp1_rep	CDS	42565472	42565698	.	+	1	Parent=Os01t0965400-01
Chr01	irgsp1_rep	CDS	42566312	42566488	.	+	2	Parent=Os01t0965400-01
Chr01	irgsp1_rep	CDS	42566570	42566718	.	+	2	Parent=Os01t0965400-01
Chr01	irgsp1_rep	three_prime_UTR	42566719	42566993	.	+	.	Parent=Os01t0965400-01
Chr01	irgsp1_rep	mRNA	42568151	42573077	.	+	.	ID=Os01t0965500-01;Name=Os01t0965500-01;Locus_id=Os01g0965500;Oryzabase Gene Symbol Synonym(s)=OsSET6%2C SDG720;Oryzabase Gene Name Synonym(s)=SET protein 6;Note=Similar to SET domain protein.;Transcript_evidence=AK241918 (DDBJ%2C Best hit);ORF_evidence=XP_002318442.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=SET domain (IPR001214),Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-finger (IPR019787);NIAS_FLcDNA=J075073G20;Oryzabase=13374;TENOR=Os01t0965500-01;KEGG=Os01t0965500-01
Chr01	irgsp1_rep	CDS	42568151	42568310	.	+	0	Parent=Os01t0965500-01
Chr01	irgsp1_rep	CDS	42568460	42568552	.	+	2	Parent=Os01t0965500-01
Chr01	irgsp1_rep	CDS	42571388	42571611	.	+	2	Parent=Os01t0965500-01
Chr01	irgsp1_rep	CDS	42571689	42571789	.	+	0	Parent=Os01t0965500-01
Chr01	irgsp1_rep	CDS	42571871	42572083	.	+	1	Parent=Os01t0965500-01
Chr01	irgsp1_rep	CDS	42572485	42572644	.	+	1	Parent=Os01t0965500-01
Chr01	irgsp1_rep	three_prime_UTR	42572645	42573077	.	+	.	Parent=Os01t0965500-01
Chr01	irgsp1_rep	mRNA	42574874	42577817	.	-	.	ID=Os01t0965600-01;Name=Os01t0965600-01;Locus_id=Os01g0965600;Note=Similar to growth inhibition and differentiation-related protein 88.;Transcript_evidence=AK073409 (DDBJ%2C Best hit);ORF_evidence=NP_001150080.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033042I24;Expression=AK073409;TENOR=Os01t0965600-01;KEGG=Os01t0965600-01
Chr01	irgsp1_rep	five_prime_UTR	42577596	42577817	.	-	.	Parent=Os01t0965600-01
Chr01	irgsp1_rep	five_prime_UTR	42577382	42577411	.	-	.	Parent=Os01t0965600-01
Chr01	irgsp1_rep	CDS	42577315	42577381	.	-	0	Parent=Os01t0965600-01
Chr01	irgsp1_rep	CDS	42576926	42577204	.	-	2	Parent=Os01t0965600-01
Chr01	irgsp1_rep	CDS	42576670	42576837	.	-	2	Parent=Os01t0965600-01
Chr01	irgsp1_rep	CDS	42575547	42575636	.	-	2	Parent=Os01t0965600-01
Chr01	irgsp1_rep	CDS	42575206	42575393	.	-	2	Parent=Os01t0965600-01
Chr01	irgsp1_rep	three_prime_UTR	42574874	42575205	.	-	.	Parent=Os01t0965600-01
Chr01	irgsp1_rep	mRNA	42582894	42583645	.	+	.	ID=Os01t0965700-00;Name=Os01t0965700-00;Locus_id=Os01g0965700;Note=Hypothetical conserved gene.;Transcript_evidence=EU941580 (DDBJ);ORF_evidence=Q5JJV7 (UniProt);TENOR=Os01t0965700-00;KEGG=Os01t0965700-00
Chr01	irgsp1_rep	CDS	42582894	42583097	.	+	0	Parent=Os01t0965700-00
Chr01	irgsp1_rep	CDS	42583226	42583645	.	+	0	Parent=Os01t0965700-00
Chr01	irgsp1_rep	mRNA	42585172	42586070	.	-	.	ID=Os01t0965800-01;Name=Os01t0965800-01;Locus_id=Os01g0965800;Note=Conserved hypothetical protein.;Transcript_evidence=AK107795 (DDBJ%2C Best hit);ORF_evidence=A2WZF8 (UniProt);NIAS_FLcDNA=002-133-D09;Expression=AK107795;TENOR=Os01t0965800-01;KEGG=Os01t0965800-01
Chr01	irgsp1_rep	five_prime_UTR	42585973	42586070	.	-	.	Parent=Os01t0965800-01
Chr01	irgsp1_rep	CDS	42585421	42585972	.	-	0	Parent=Os01t0965800-01
Chr01	irgsp1_rep	three_prime_UTR	42585172	42585420	.	-	.	Parent=Os01t0965800-01
Chr01	irgsp1_rep	mRNA	42587307	42590270	.	-	.	ID=Os01t0965900-01;Name=Os01t0965900-01;Locus_id=Os01g0965900;Note=Conserved hypothetical protein.;Transcript_evidence=AK108889 (DDBJ%2C Best hit);ORF_evidence=B8A9Y3 (UniProt);NIAS_FLcDNA=002-152-E03;Expression=AK108889;TENOR=Os01t0965900-01;KEGG=Os01t0965900-01
Chr01	irgsp1_rep	five_prime_UTR	42590189	42590270	.	-	.	Parent=Os01t0965900-01
Chr01	irgsp1_rep	CDS	42590004	42590188	.	-	0	Parent=Os01t0965900-01
Chr01	irgsp1_rep	CDS	42589828	42589911	.	-	1	Parent=Os01t0965900-01
Chr01	irgsp1_rep	CDS	42588114	42588153	.	-	1	Parent=Os01t0965900-01
Chr01	irgsp1_rep	CDS	42587951	42588019	.	-	0	Parent=Os01t0965900-01
Chr01	irgsp1_rep	CDS	42587622	42587861	.	-	0	Parent=Os01t0965900-01
Chr01	irgsp1_rep	three_prime_UTR	42587307	42587621	.	-	.	Parent=Os01t0965900-01
Chr01	irgsp1_rep	mRNA	42592300	42598002	.	-	.	ID=Os01t0966000-01;Name=Os01t0966000-01;Locus_id=Os01g0966000;Note=Similar to Plasma membrane H+-ATPase (EC 3.6.1.3).;Transcript_evidence=AK120106 (DDBJ%2C Best hit);ORF_evidence=NP_198599.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity (GO:0016787);InterPro=Hydantoinase/oxoprolinase (IPR002821),Hydantoinase B/oxoprolinase (IPR003692),Hydantoinaseoxoprolinase%2C N-terminal (IPR008040);NIAS_FLcDNA=J013023K07;Expression=AK120106;TENOR=Os01t0966000-01;KEGG=Os01t0966000-01 (EC:3.5.2.9%2C EC:3.6.1.3)
Chr01	irgsp1_rep	five_prime_UTR	42597809	42598002	.	-	.	Parent=Os01t0966000-01
Chr01	irgsp1_rep	five_prime_UTR	42597423	42597456	.	-	.	Parent=Os01t0966000-01
Chr01	irgsp1_rep	CDS	42593649	42597422	.	-	0	Parent=Os01t0966000-01
Chr01	irgsp1_rep	three_prime_UTR	42592300	42593648	.	-	.	Parent=Os01t0966000-01
Chr01	irgsp1_rep	mRNA	42593541	42597970	.	-	.	ID=Os01t0966000-02;Name=Os01t0966000-02;Locus_id=Os01g0966000;Note=Similar to Plasma membrane H+-ATPase (EC 3.6.1.3).;Transcript_evidence=AK067542 (DDBJ%2C Best hit);ORF_evidence=NP_198599.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity (GO:0016787);InterPro=Hydantoinase/oxoprolinase (IPR002821),Hydantoinase B/oxoprolinase (IPR003692),Hydantoinaseoxoprolinase%2C N-terminal (IPR008040);NIAS_FLcDNA=J013110L13;Expression=AK067542;TENOR=Os01t0966000-02;KEGG=Os01t0966000-02 (EC:3.5.2.9%2C EC:3.6.1.3)
Chr01	irgsp1_rep	five_prime_UTR	42597809	42597970	.	-	.	Parent=Os01t0966000-02
Chr01	irgsp1_rep	five_prime_UTR	42597423	42597456	.	-	.	Parent=Os01t0966000-02
Chr01	irgsp1_rep	CDS	42593649	42597422	.	-	0	Parent=Os01t0966000-02
Chr01	irgsp1_rep	three_prime_UTR	42593541	42593648	.	-	.	Parent=Os01t0966000-02
Chr01	irgsp1_rep	mRNA	42593458	42596391	.	-	.	ID=Os01t0966000-03;Name=Os01t0966000-03;Locus_id=Os01g0966000;Note=Similar to predicted protein.;Transcript_evidence=AK061883 (DDBJ%2C Best hit);ORF_evidence=NP_198599.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Hydantoinase B/oxoprolinase (IPR003692);NIAS_FLcDNA=001-041-F02;Expression=AK061883;TENOR=Os01t0966000-03;KEGG=Os01t0966000-03 (EC:3.5.2.9)
Chr01	irgsp1_rep	five_prime_UTR	42596073	42596391	.	-	.	Parent=Os01t0966000-03
Chr01	irgsp1_rep	CDS	42596043	42596072	.	-	0	Parent=Os01t0966000-03
Chr01	irgsp1_rep	CDS	42593649	42594488	.	-	0	Parent=Os01t0966000-03
Chr01	irgsp1_rep	three_prime_UTR	42593458	42593648	.	-	.	Parent=Os01t0966000-03
Chr01	irgsp1_rep	mRNA	42590881	42595229	.	-	.	ID=Os01t0966000-04;Name=Os01t0966000-04;Locus_id=Os01g0966000;Note=Similar to OXP1 (OXOPROLINASE 1)%3B 5-oxoprolinase (ATP-hydrolyzing)/ hydrolase.;Transcript_evidence=AK120672 (DDBJ%2C Best hit);ORF_evidence=NP_198599.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Hydantoinase B/oxoprolinase (IPR003692);NIAS_FLcDNA=J013160L10;TENOR=Os01t0966000-04;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	42593649	42595229	.	-	0	Parent=Os01t0966000-04
Chr01	irgsp1_rep	three_prime_UTR	42591933	42593648	.	-	.	Parent=Os01t0966000-04
Chr01	irgsp1_rep	three_prime_UTR	42591637	42591843	.	-	.	Parent=Os01t0966000-04
Chr01	irgsp1_rep	three_prime_UTR	42591431	42591549	.	-	.	Parent=Os01t0966000-04
Chr01	irgsp1_rep	three_prime_UTR	42590881	42591339	.	-	.	Parent=Os01t0966000-04
Chr01	irgsp1_rep	mRNA	42609407	42612433	.	+	.	ID=Os01t0966100-01;Name=Os01t0966100-01;Locus_id=Os01g0966100;CGSNL Gene Symbol=ABCD2;CGSNL Gene Name=ABC TRANSPORTER D FAMILY MEMBER 2;Oryzabase Gene Symbol Synonym(s)=OsABCD2;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCD subgroup member 2;Note=Similar to Peroxisomal ABC transporter.;Transcript_evidence=AK110805 (DDBJ%2C Best hit);ORF_evidence=Q5JJV5 (UniProt);GO=Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887);InterPro=ABC transporter-like (IPR003439),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=002-171-E11;Oryzabase=11970;Expression=AK110805;TENOR=Os01t0966100-01;KEGG=Os01t0966100-01
Chr01	irgsp1_rep	CDS	42609407	42609452	.	+	0	Parent=Os01t0966100-01
Chr01	irgsp1_rep	CDS	42609530	42609688	.	+	2	Parent=Os01t0966100-01
Chr01	irgsp1_rep	CDS	42610581	42610727	.	+	2	Parent=Os01t0966100-01
Chr01	irgsp1_rep	CDS	42610818	42611024	.	+	2	Parent=Os01t0966100-01
Chr01	irgsp1_rep	CDS	42611207	42611361	.	+	2	Parent=Os01t0966100-01
Chr01	irgsp1_rep	CDS	42611517	42611569	.	+	0	Parent=Os01t0966100-01
Chr01	irgsp1_rep	CDS	42611654	42611732	.	+	1	Parent=Os01t0966100-01
Chr01	irgsp1_rep	CDS	42611913	42611999	.	+	0	Parent=Os01t0966100-01
Chr01	irgsp1_rep	three_prime_UTR	42612000	42612433	.	+	.	Parent=Os01t0966100-01
Chr01	irgsp1_rep	mRNA	42613788	42614622	.	-	.	ID=Os01t0966200-01;Name=Os01t0966200-01;Locus_id=Os01g0966200;Note=Protein of unknown function YGGT family protein.;Transcript_evidence=AK058564 (DDBJ%2C Best hit),AK098935 (DDBJ%2C Best hit);ORF_evidence=NP_198461.2 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Uncharacterised protein family Ycf19 (IPR003425);NIAS_FLcDNA=001-017-E01,J013040E19;Expression=AK058564;TENOR=Os01t0966200-01;KEGG=Os01t0966200-01
Chr01	irgsp1_rep	five_prime_UTR	42614597	42614622	.	-	.	Parent=Os01t0966200-01
Chr01	irgsp1_rep	CDS	42614516	42614596	.	-	0	Parent=Os01t0966200-01
Chr01	irgsp1_rep	CDS	42613909	42614421	.	-	0	Parent=Os01t0966200-01
Chr01	irgsp1_rep	three_prime_UTR	42613788	42613908	.	-	.	Parent=Os01t0966200-01
Chr01	irgsp1_rep	mRNA	42614814	42618231	.	+	.	ID=Os01t0966300-01;Name=Os01t0966300-01;Locus_id=Os01g0966300;Note=Similar to Mitochondrial processing peptidase.;Transcript_evidence=AK073175 (DDBJ%2C Best hit);ORF_evidence=P29677 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: catalytic activity (GO:0003824),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: metal ion binding (GO:0046872);InterPro=Peptidase M16%2C C-terminal (IPR007863),Peptidase M16%2C core (IPR011237),Metalloenzyme%2C LuxS/M16 peptidase-like%2C metal-binding (IPR011249),Peptidase M16%2C N-terminal (IPR011765);NIAS_FLcDNA=J033023J10;Expression=AK073175;TENOR=Os01t0966300-01;KEGG=Os01t0966300-01 (EC:3.4.24.64)
Chr01	irgsp1_rep	five_prime_UTR	42614814	42614880	.	+	.	Parent=Os01t0966300-01
Chr01	irgsp1_rep	CDS	42614881	42614919	.	+	0	Parent=Os01t0966300-01
Chr01	irgsp1_rep	CDS	42615016	42615219	.	+	0	Parent=Os01t0966300-01
Chr01	irgsp1_rep	CDS	42615311	42615607	.	+	0	Parent=Os01t0966300-01
Chr01	irgsp1_rep	CDS	42615697	42615864	.	+	0	Parent=Os01t0966300-01
Chr01	irgsp1_rep	CDS	42616035	42616202	.	+	0	Parent=Os01t0966300-01
Chr01	irgsp1_rep	CDS	42616295	42616375	.	+	0	Parent=Os01t0966300-01
Chr01	irgsp1_rep	CDS	42616486	42616552	.	+	0	Parent=Os01t0966300-01
Chr01	irgsp1_rep	CDS	42616968	42617065	.	+	2	Parent=Os01t0966300-01
Chr01	irgsp1_rep	CDS	42617307	42617379	.	+	0	Parent=Os01t0966300-01
Chr01	irgsp1_rep	CDS	42617468	42617538	.	+	2	Parent=Os01t0966300-01
Chr01	irgsp1_rep	CDS	42617655	42617704	.	+	0	Parent=Os01t0966300-01
Chr01	irgsp1_rep	CDS	42617787	42617899	.	+	1	Parent=Os01t0966300-01
Chr01	irgsp1_rep	CDS	42617983	42618026	.	+	2	Parent=Os01t0966300-01
Chr01	irgsp1_rep	three_prime_UTR	42618027	42618231	.	+	.	Parent=Os01t0966300-01
Chr01	irgsp1_rep	mRNA	42618478	42621704	.	-	.	ID=Os01t0966400-01;Name=Os01t0966400-01;Locus_id=Os01g0966400;Note=Leucine-rich repeat%2C SDS22 containing protein.;Transcript_evidence=AK103064 (DDBJ%2C Best hit);ORF_evidence=B6TDM9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591);NIAS_FLcDNA=J033117N09;Expression=AK103064;TENOR=Os01t0966400-01;KEGG=Os01t0966400-01
Chr01	irgsp1_rep	five_prime_UTR	42621628	42621704	.	-	.	Parent=Os01t0966400-01
Chr01	irgsp1_rep	CDS	42621532	42621627	.	-	0	Parent=Os01t0966400-01
Chr01	irgsp1_rep	CDS	42621356	42621427	.	-	0	Parent=Os01t0966400-01
Chr01	irgsp1_rep	CDS	42620877	42620969	.	-	0	Parent=Os01t0966400-01
Chr01	irgsp1_rep	CDS	42620708	42620789	.	-	0	Parent=Os01t0966400-01
Chr01	irgsp1_rep	CDS	42620561	42620617	.	-	2	Parent=Os01t0966400-01
Chr01	irgsp1_rep	CDS	42620121	42620185	.	-	2	Parent=Os01t0966400-01
Chr01	irgsp1_rep	CDS	42619925	42620020	.	-	0	Parent=Os01t0966400-01
Chr01	irgsp1_rep	CDS	42619706	42619792	.	-	0	Parent=Os01t0966400-01
Chr01	irgsp1_rep	CDS	42619523	42619603	.	-	0	Parent=Os01t0966400-01
Chr01	irgsp1_rep	CDS	42618792	42619454	.	-	0	Parent=Os01t0966400-01
Chr01	irgsp1_rep	three_prime_UTR	42618478	42618791	.	-	.	Parent=Os01t0966400-01
Chr01	irgsp1_rep	mRNA	42621833	42624664	.	+	.	ID=Os01t0966500-01;Name=Os01t0966500-01;Locus_id=Os01g0966500;Note=Similar to Vacuolar protein sorting 55 containing protein.;Transcript_evidence=AK062986 (DDBJ%2C Best hit);ORF_evidence=A6N1U6 (UniProt);InterPro=Vacuolar protein sorting 55 (IPR007262);NIAS_FLcDNA=001-109-F09;TENOR=Os01t0966500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	42621833	42621834	.	+	.	Parent=Os01t0966500-01
Chr01	irgsp1_rep	CDS	42621835	42621962	.	+	0	Parent=Os01t0966500-01
Chr01	irgsp1_rep	CDS	42623434	42623485	.	+	1	Parent=Os01t0966500-01
Chr01	irgsp1_rep	CDS	42623915	42623954	.	+	0	Parent=Os01t0966500-01
Chr01	irgsp1_rep	CDS	42624035	42624119	.	+	2	Parent=Os01t0966500-01
Chr01	irgsp1_rep	CDS	42624276	42624459	.	+	1	Parent=Os01t0966500-01
Chr01	irgsp1_rep	three_prime_UTR	42624460	42624664	.	+	.	Parent=Os01t0966500-01
Chr01	irgsp1_rep	mRNA	42621833	42624710	.	+	.	ID=Os01t0966500-02;Name=Os01t0966500-02;Locus_id=Os01g0966500;Note=Similar to Vacuolar protein sorting 55 containing protein.;Transcript_evidence=AK071603 (DDBJ%2C Best hit);ORF_evidence=A6N1U6 (UniProt);InterPro=Vacuolar protein sorting 55 (IPR007262);NIAS_FLcDNA=J023104F08;TENOR=Os01t0966500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	42621833	42621978	.	+	.	Parent=Os01t0966500-02
Chr01	irgsp1_rep	CDS	42621979	42622127	.	+	0	Parent=Os01t0966500-02
Chr01	irgsp1_rep	CDS	42623434	42623485	.	+	1	Parent=Os01t0966500-02
Chr01	irgsp1_rep	CDS	42623915	42623954	.	+	0	Parent=Os01t0966500-02
Chr01	irgsp1_rep	CDS	42624035	42624119	.	+	2	Parent=Os01t0966500-02
Chr01	irgsp1_rep	CDS	42624276	42624459	.	+	1	Parent=Os01t0966500-02
Chr01	irgsp1_rep	three_prime_UTR	42624460	42624710	.	+	.	Parent=Os01t0966500-02
Chr01	irgsp1_rep	mRNA	42626321	42630352	.	+	.	ID=Os01t0966700-01;Name=Os01t0966700-01;Locus_id=Os01g0966700;Oryzabase Gene Symbol Synonym(s)=OsCIN4%2C CIN4%2C OsCIN5%2C CIN5;Oryzabase Gene Name Synonym(s)=b-Fructofuranosidase%2C cell-wall invertase 4%2C cell-wall invertase 5;Note=Similar to Beta-fructofuranosidase (EC 3.2.1.26) (Fragment).;Transcript_evidence=AK067444 (DDBJ%2C Best hit);ORF_evidence=Q5JJV0 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 32 (IPR001362),Concanavalin A-like lectin/glucanase (IPR008985),Glycosyl hydrolases family 32%2C N-terminal (IPR013148),Glycosyl hydrolase family 32%2C C-terminal (IPR013189),Glycoside hydrolase%2C family 32%2C active site (IPR018053),Glycosyl hydrolase family 43%2C five-bladed beta-propellor domain (IPR023296);NIAS_FLcDNA=J013099F12;Oryzabase=12467;Expression=AK067444;TENOR=Os01t0966700-01;KEGG=Os01t0966700-01 (EC:3.2.1.26)
Chr01	irgsp1_rep	five_prime_UTR	42626321	42626433	.	+	.	Parent=Os01t0966700-01
Chr01	irgsp1_rep	CDS	42626434	42626653	.	+	0	Parent=Os01t0966700-01
Chr01	irgsp1_rep	CDS	42627412	42627420	.	+	2	Parent=Os01t0966700-01
Chr01	irgsp1_rep	CDS	42627509	42628365	.	+	2	Parent=Os01t0966700-01
Chr01	irgsp1_rep	CDS	42629052	42629207	.	+	0	Parent=Os01t0966700-01
Chr01	irgsp1_rep	CDS	42629295	42629539	.	+	0	Parent=Os01t0966700-01
Chr01	irgsp1_rep	CDS	42629749	42629842	.	+	1	Parent=Os01t0966700-01
Chr01	irgsp1_rep	CDS	42629948	42630139	.	+	0	Parent=Os01t0966700-01
Chr01	irgsp1_rep	three_prime_UTR	42630140	42630352	.	+	.	Parent=Os01t0966700-01
Chr01	irgsp1_rep	mRNA	42627962	42630366	.	+	.	ID=Os01t0966700-02;Name=Os01t0966700-02;Locus_id=Os01g0966700;Oryzabase Gene Symbol Synonym(s)=OsCIN4%2C CIN4%2C OsCIN5%2C CIN5;Oryzabase Gene Name Synonym(s)=b-Fructofuranosidase%2C cell-wall invertase 4%2C cell-wall invertase 5;Note=Similar to Beta-fructofuranosidase%2C insoluble isoenzyme 4.;Transcript_evidence=AK061744 (DDBJ%2C Best hit);ORF_evidence=Q5JJV0 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 32 (IPR001362),Concanavalin A-like lectin/glucanase (IPR008985),Glycosyl hydrolases family 32%2C N-terminal (IPR013148),Glycosyl hydrolase family 32%2C C-terminal (IPR013189),Glycosyl hydrolase family 43%2C five-bladed beta-propellor domain (IPR023296);NIAS_FLcDNA=001-038-F09;Oryzabase=12467;Expression=AK061744;TENOR=Os01t0966700-02;KEGG=Os01t0966700-02 (EC:3.2.1.26)
Chr01	irgsp1_rep	five_prime_UTR	42627962	42627963	.	+	.	Parent=Os01t0966700-02
Chr01	irgsp1_rep	CDS	42627964	42628365	.	+	0	Parent=Os01t0966700-02
Chr01	irgsp1_rep	CDS	42629052	42629207	.	+	0	Parent=Os01t0966700-02
Chr01	irgsp1_rep	CDS	42629295	42629539	.	+	0	Parent=Os01t0966700-02
Chr01	irgsp1_rep	CDS	42629749	42629842	.	+	1	Parent=Os01t0966700-02
Chr01	irgsp1_rep	CDS	42629948	42630139	.	+	0	Parent=Os01t0966700-02
Chr01	irgsp1_rep	three_prime_UTR	42630140	42630366	.	+	.	Parent=Os01t0966700-02
Chr01	irgsp1_rep	mRNA	42626490	42630120	.	-	.	ID=Os01t0966801-00;Name=Os01t0966801-00;Locus_id=Os01g0966801;Note=Hypothetical protein.;Transcript_evidence=tplb0043p13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0966801-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	42630106	42630120	.	-	.	Parent=Os01t0966801-00
Chr01	irgsp1_rep	CDS	42629930	42630105	.	-	0	Parent=Os01t0966801-00
Chr01	irgsp1_rep	CDS	42629741	42629826	.	-	1	Parent=Os01t0966801-00
Chr01	irgsp1_rep	CDS	42629482	42629531	.	-	2	Parent=Os01t0966801-00
Chr01	irgsp1_rep	three_prime_UTR	42629282	42629481	.	-	.	Parent=Os01t0966801-00
Chr01	irgsp1_rep	three_prime_UTR	42629052	42629196	.	-	.	Parent=Os01t0966801-00
Chr01	irgsp1_rep	three_prime_UTR	42627507	42628365	.	-	.	Parent=Os01t0966801-00
Chr01	irgsp1_rep	three_prime_UTR	42626490	42626659	.	-	.	Parent=Os01t0966801-00
Chr01	irgsp1_rep	mRNA	42636466	42638217	.	-	.	ID=Os01t0966900-00;Name=Os01t0966900-00;Locus_id=Os01g0966900;Note=Similar to Sorbitol transporter.;Transcript_evidence=tplb0003e23 (Wheat FLcDNA);ORF_evidence=B6TDG1 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);TENOR=Os01t0966900-00;KEGG=Os01t0966900-00
Chr01	irgsp1_rep	CDS	42636466	42638217	.	-	0	Parent=Os01t0966900-00
Chr01	irgsp1_rep	mRNA	42638856	42639926	.	-	.	ID=Os01t0967000-00;Name=Os01t0967000-00;Locus_id=Os01g0967000;Oryzabase Gene Name Synonym(s)=Sm gene%2C Sm family protein;Note=Similar to Small nuclear ribonucleoprotein-like protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B3TLL8 (UniProt);InterPro=Like-Sm ribonucleoprotein (LSM) domain (IPR001163),Like-Sm ribonucleoprotein (LSM) domain%2C eukaryotic/archaea-type (IPR006649),Like-Sm ribonucleoprotein (LSM)-related domain (IPR010920);Oryzabase=15637;TENOR=Os01t0967000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	42639914	42639926	.	-	0	Parent=Os01t0967000-00
Chr01	irgsp1_rep	CDS	42639296	42639372	.	-	2	Parent=Os01t0967000-00
Chr01	irgsp1_rep	CDS	42639065	42639169	.	-	0	Parent=Os01t0967000-00
Chr01	irgsp1_rep	CDS	42638856	42638972	.	-	0	Parent=Os01t0967000-00
Chr01	irgsp1_rep	mRNA	42646061	42653875	.	+	.	ID=Os01t0967100-01;Name=Os01t0967100-01;Locus_id=Os01g0967100;Note=Glycoside hydrolase%2C family 15 domain containing protein.;Transcript_evidence=AK120690 (DDBJ%2C Best hit);ORF_evidence=B9EWX6 (UniProt);NIAS_FLcDNA=J013169H18;Expression=AK120690;TENOR=Os01t0967100-01;KEGG=Os01t0967100-01
Chr01	irgsp1_rep	five_prime_UTR	42646061	42646324	.	+	.	Parent=Os01t0967100-01
Chr01	irgsp1_rep	CDS	42646325	42646632	.	+	0	Parent=Os01t0967100-01
Chr01	irgsp1_rep	CDS	42646716	42646956	.	+	1	Parent=Os01t0967100-01
Chr01	irgsp1_rep	CDS	42647577	42647878	.	+	0	Parent=Os01t0967100-01
Chr01	irgsp1_rep	CDS	42648073	42648249	.	+	1	Parent=Os01t0967100-01
Chr01	irgsp1_rep	CDS	42648495	42649259	.	+	1	Parent=Os01t0967100-01
Chr01	irgsp1_rep	CDS	42649339	42649433	.	+	1	Parent=Os01t0967100-01
Chr01	irgsp1_rep	CDS	42649531	42649593	.	+	2	Parent=Os01t0967100-01
Chr01	irgsp1_rep	CDS	42649689	42649777	.	+	2	Parent=Os01t0967100-01
Chr01	irgsp1_rep	CDS	42649871	42649966	.	+	0	Parent=Os01t0967100-01
Chr01	irgsp1_rep	CDS	42650099	42650746	.	+	0	Parent=Os01t0967100-01
Chr01	irgsp1_rep	CDS	42651480	42651554	.	+	0	Parent=Os01t0967100-01
Chr01	irgsp1_rep	CDS	42652246	42652316	.	+	0	Parent=Os01t0967100-01
Chr01	irgsp1_rep	CDS	42652400	42652457	.	+	1	Parent=Os01t0967100-01
Chr01	irgsp1_rep	CDS	42652838	42653036	.	+	0	Parent=Os01t0967100-01
Chr01	irgsp1_rep	CDS	42653129	42653194	.	+	2	Parent=Os01t0967100-01
Chr01	irgsp1_rep	CDS	42653341	42653825	.	+	2	Parent=Os01t0967100-01
Chr01	irgsp1_rep	three_prime_UTR	42653826	42653875	.	+	.	Parent=Os01t0967100-01
Chr01	irgsp1_rep	mRNA	42654497	42655716	.	+	.	ID=Os01t0967200-01;Name=Os01t0967200-01;Locus_id=Os01g0967200;Note=Similar to Rac GTPase activating protein 1.;Transcript_evidence=AK108137 (DDBJ%2C Best hit);ORF_evidence=B6SWP2 (UniProt);GO=Biological Process: signal transduction (GO:0007165),Cellular Component: intracellular (GO:0005622),Molecular Function: protein binding (GO:0005515);InterPro=PAK-box/P21-Rho-binding (IPR000095),Rho GTPase-activating protein domain (IPR000198),Rho GTPase activation protein (IPR008936);NIAS_FLcDNA=002-139-E04;Expression=AK108137;TENOR=Os01t0967200-01;KEGG=Os01t0967200-01
Chr01	irgsp1_rep	five_prime_UTR	42654497	42654647	.	+	.	Parent=Os01t0967200-01
Chr01	irgsp1_rep	CDS	42654648	42654844	.	+	0	Parent=Os01t0967200-01
Chr01	irgsp1_rep	CDS	42654929	42655508	.	+	1	Parent=Os01t0967200-01
Chr01	irgsp1_rep	three_prime_UTR	42655509	42655716	.	+	.	Parent=Os01t0967200-01
Chr01	irgsp1_rep	mRNA	42663321	42665671	.	-	.	ID=Os01t0967400-01;Name=Os01t0967400-01;Locus_id=Os01g0967400;Note=Similar to Maternal Effect Lethal family member.;Transcript_evidence=AK242523 (DDBJ%2C Best hit);ORF_evidence=B6TM03 (UniProt);NIAS_FLcDNA=J080315A20;TENOR=Os01t0967400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	42665602	42665671	.	-	.	Parent=Os01t0967400-01
Chr01	irgsp1_rep	five_prime_UTR	42665327	42665447	.	-	.	Parent=Os01t0967400-01
Chr01	irgsp1_rep	five_prime_UTR	42664369	42664440	.	-	.	Parent=Os01t0967400-01
Chr01	irgsp1_rep	five_prime_UTR	42663948	42663974	.	-	.	Parent=Os01t0967400-01
Chr01	irgsp1_rep	CDS	42663883	42663947	.	-	0	Parent=Os01t0967400-01
Chr01	irgsp1_rep	CDS	42663532	42663643	.	-	1	Parent=Os01t0967400-01
Chr01	irgsp1_rep	three_prime_UTR	42663321	42663531	.	-	.	Parent=Os01t0967400-01
Chr01	irgsp1_rep	mRNA	42673021	42678079	.	+	.	ID=Os01t0967600-01;Name=Os01t0967600-01;Locus_id=Os01g0967600;Note=Hypothetical protein.;Transcript_evidence=AK119357 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=001-131-G01;TENOR=Os01t0967600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	42673021	42673181	.	+	.	Parent=Os01t0967600-01
Chr01	irgsp1_rep	CDS	42673182	42673251	.	+	0	Parent=Os01t0967600-01
Chr01	irgsp1_rep	CDS	42674709	42674774	.	+	2	Parent=Os01t0967600-01
Chr01	irgsp1_rep	CDS	42674978	42675009	.	+	2	Parent=Os01t0967600-01
Chr01	irgsp1_rep	CDS	42675091	42675464	.	+	0	Parent=Os01t0967600-01
Chr01	irgsp1_rep	CDS	42675537	42675670	.	+	1	Parent=Os01t0967600-01
Chr01	irgsp1_rep	CDS	42675789	42675945	.	+	2	Parent=Os01t0967600-01
Chr01	irgsp1_rep	CDS	42676984	42677287	.	+	1	Parent=Os01t0967600-01
Chr01	irgsp1_rep	CDS	42677385	42677447	.	+	0	Parent=Os01t0967600-01
Chr01	irgsp1_rep	three_prime_UTR	42677448	42677501	.	+	.	Parent=Os01t0967600-01
Chr01	irgsp1_rep	three_prime_UTR	42677817	42678079	.	+	.	Parent=Os01t0967600-01
Chr01	irgsp1_rep	mRNA	42679241	42680544	.	+	.	ID=Os01t0967700-01;Name=Os01t0967700-01;Locus_id=Os01g0967700;Note=RNA-directed DNA polymerase (reverse transcriptase)%2C related domain containing protein.;Transcript_evidence=AK103753 (DDBJ%2C Best hit);ORF_evidence=B8B5D3 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J033143C16;Expression=AK103753;TENOR=Os01t0967700-01;KEGG=Os01t0967700-01
Chr01	irgsp1_rep	CDS	42679241	42680272	.	+	0	Parent=Os01t0967700-01
Chr01	irgsp1_rep	three_prime_UTR	42680273	42680544	.	+	.	Parent=Os01t0967700-01
Chr01	irgsp1_rep	mRNA	42684942	42689080	.	+	.	ID=Os01t0967800-01;Name=Os01t0967800-01;Locus_id=Os01g0967800;Note=Conserved hypothetical protein.;Transcript_evidence=AK064854 (DDBJ%2C Best hit);ORF_evidence=Q5JLF2 (UniProt);NIAS_FLcDNA=J013000H07;Expression=AK064854;TENOR=Os01t0967800-01;KEGG=Os01t0967800-01
Chr01	irgsp1_rep	five_prime_UTR	42684942	42685393	.	+	.	Parent=Os01t0967800-01
Chr01	irgsp1_rep	CDS	42685394	42686203	.	+	0	Parent=Os01t0967800-01
Chr01	irgsp1_rep	CDS	42686343	42686552	.	+	0	Parent=Os01t0967800-01
Chr01	irgsp1_rep	CDS	42687239	42687346	.	+	0	Parent=Os01t0967800-01
Chr01	irgsp1_rep	CDS	42687437	42687478	.	+	0	Parent=Os01t0967800-01
Chr01	irgsp1_rep	CDS	42687557	42687652	.	+	0	Parent=Os01t0967800-01
Chr01	irgsp1_rep	CDS	42687732	42687824	.	+	0	Parent=Os01t0967800-01
Chr01	irgsp1_rep	CDS	42687918	42688028	.	+	0	Parent=Os01t0967800-01
Chr01	irgsp1_rep	CDS	42688124	42688156	.	+	0	Parent=Os01t0967800-01
Chr01	irgsp1_rep	CDS	42688234	42688284	.	+	0	Parent=Os01t0967800-01
Chr01	irgsp1_rep	CDS	42688602	42688679	.	+	0	Parent=Os01t0967800-01
Chr01	irgsp1_rep	CDS	42688787	42688807	.	+	0	Parent=Os01t0967800-01
Chr01	irgsp1_rep	three_prime_UTR	42688808	42689080	.	+	.	Parent=Os01t0967800-01
Chr01	irgsp1_rep	mRNA	42685948	42689025	.	+	.	ID=Os01t0967800-02;Name=Os01t0967800-02;Locus_id=Os01g0967800;Note=Hypothetical conserved gene.;Transcript_evidence=AK061693 (DDBJ%2C Best hit);ORF_evidence=Q5JLF2 (UniProt);NIAS_FLcDNA=001-037-C06;Expression=AK061693;TENOR=Os01t0967800-02;KEGG=Os01t0967800-02
Chr01	irgsp1_rep	five_prime_UTR	42685948	42685948	.	+	.	Parent=Os01t0967800-02
Chr01	irgsp1_rep	CDS	42685949	42686203	.	+	0	Parent=Os01t0967800-02
Chr01	irgsp1_rep	CDS	42686343	42686552	.	+	0	Parent=Os01t0967800-02
Chr01	irgsp1_rep	CDS	42687239	42687346	.	+	0	Parent=Os01t0967800-02
Chr01	irgsp1_rep	CDS	42687437	42687478	.	+	0	Parent=Os01t0967800-02
Chr01	irgsp1_rep	CDS	42687557	42687652	.	+	0	Parent=Os01t0967800-02
Chr01	irgsp1_rep	CDS	42687744	42687824	.	+	0	Parent=Os01t0967800-02
Chr01	irgsp1_rep	CDS	42687918	42688028	.	+	0	Parent=Os01t0967800-02
Chr01	irgsp1_rep	CDS	42688124	42688156	.	+	0	Parent=Os01t0967800-02
Chr01	irgsp1_rep	CDS	42688234	42688284	.	+	0	Parent=Os01t0967800-02
Chr01	irgsp1_rep	CDS	42688602	42688679	.	+	0	Parent=Os01t0967800-02
Chr01	irgsp1_rep	CDS	42688787	42688807	.	+	0	Parent=Os01t0967800-02
Chr01	irgsp1_rep	three_prime_UTR	42688808	42689025	.	+	.	Parent=Os01t0967800-02
Chr01	irgsp1_rep	mRNA	42689913	42695416	.	+	.	ID=Os01t0967900-01;Name=Os01t0967900-01;Locus_id=Os01g0967900;Note=Similar to predicted protein.;Transcript_evidence=AK072684 (DDBJ%2C Best hit);ORF_evidence=Q9LZ26 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aminopeptidase activity (GO:0004177),Molecular Function: zinc ion binding (GO:0008270);InterPro=Peptidase M18 (IPR001948);NIAS_FLcDNA=J023141A18;Expression=AK072684;TENOR=Os01t0967900-01;KEGG=Os01t0967900-01 (EC:3.4.11.21)
Chr01	irgsp1_rep	five_prime_UTR	42689913	42689977	.	+	.	Parent=Os01t0967900-01
Chr01	irgsp1_rep	CDS	42689978	42690224	.	+	0	Parent=Os01t0967900-01
Chr01	irgsp1_rep	CDS	42690442	42690577	.	+	2	Parent=Os01t0967900-01
Chr01	irgsp1_rep	CDS	42691041	42691359	.	+	1	Parent=Os01t0967900-01
Chr01	irgsp1_rep	three_prime_UTR	42691360	42691795	.	+	.	Parent=Os01t0967900-01
Chr01	irgsp1_rep	three_prime_UTR	42691916	42692155	.	+	.	Parent=Os01t0967900-01
Chr01	irgsp1_rep	three_prime_UTR	42692461	42692593	.	+	.	Parent=Os01t0967900-01
Chr01	irgsp1_rep	three_prime_UTR	42692680	42692861	.	+	.	Parent=Os01t0967900-01
Chr01	irgsp1_rep	three_prime_UTR	42693148	42693260	.	+	.	Parent=Os01t0967900-01
Chr01	irgsp1_rep	three_prime_UTR	42695092	42695416	.	+	.	Parent=Os01t0967900-01
Chr01	irgsp1_rep	mRNA	42689929	42695406	.	+	.	ID=Os01t0967900-02;Name=Os01t0967900-02;Locus_id=Os01g0967900;Note=Similar to Aspartyl aminopeptidase.;Transcript_evidence=AK058521 (DDBJ%2C Best hit);ORF_evidence=Q9LZ26 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aminopeptidase activity (GO:0004177),Molecular Function: zinc ion binding (GO:0008270);InterPro=Peptidase M18 (IPR001948),Peptidase M18%2C domain 2 (IPR023358);NIAS_FLcDNA=001-016-H07;Expression=AK058521;TENOR=Os01t0967900-02;KEGG=Os01t0967900-02 (EC:3.4.11.21)
Chr01	irgsp1_rep	five_prime_UTR	42689929	42689977	.	+	.	Parent=Os01t0967900-02
Chr01	irgsp1_rep	CDS	42689978	42690224	.	+	0	Parent=Os01t0967900-02
Chr01	irgsp1_rep	CDS	42690442	42690577	.	+	2	Parent=Os01t0967900-02
Chr01	irgsp1_rep	CDS	42691041	42691313	.	+	1	Parent=Os01t0967900-02
Chr01	irgsp1_rep	CDS	42691648	42691795	.	+	1	Parent=Os01t0967900-02
Chr01	irgsp1_rep	CDS	42691916	42692155	.	+	0	Parent=Os01t0967900-02
Chr01	irgsp1_rep	CDS	42692461	42692593	.	+	0	Parent=Os01t0967900-02
Chr01	irgsp1_rep	CDS	42692680	42692861	.	+	2	Parent=Os01t0967900-02
Chr01	irgsp1_rep	CDS	42693148	42693260	.	+	0	Parent=Os01t0967900-02
Chr01	irgsp1_rep	CDS	42695092	42695197	.	+	1	Parent=Os01t0967900-02
Chr01	irgsp1_rep	three_prime_UTR	42695198	42695406	.	+	.	Parent=Os01t0967900-02
Chr01	irgsp1_rep	mRNA	42695637	42699355	.	-	.	ID=Os01t0968000-00;Name=Os01t0968000-00;Locus_id=Os01g0968000;Note=Similar to antiporter/ drug transporter/ transporter.;Transcript_evidence=AK365296 (DDBJ);ORF_evidence=NP_001150343.1 (RefSeq);TENOR=Os01t0968000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	42698018	42699355	.	-	0	Parent=Os01t0968000-00
Chr01	irgsp1_rep	CDS	42697115	42697216	.	-	0	Parent=Os01t0968000-00
Chr01	irgsp1_rep	CDS	42696998	42697018	.	-	0	Parent=Os01t0968000-00
Chr01	irgsp1_rep	three_prime_UTR	42696838	42696997	.	-	.	Parent=Os01t0968000-00
Chr01	irgsp1_rep	three_prime_UTR	42696523	42696643	.	-	.	Parent=Os01t0968000-00
Chr01	irgsp1_rep	three_prime_UTR	42696229	42696297	.	-	.	Parent=Os01t0968000-00
Chr01	irgsp1_rep	three_prime_UTR	42695637	42696159	.	-	.	Parent=Os01t0968000-00
Chr01	irgsp1_rep	mRNA	42700985	42701251	.	-	.	ID=Os01t0968100-00;Name=Os01t0968100-00;Locus_id=Os01g0968100;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001045515.1 (RefSeq);TENOR=Os01t0968100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	42700985	42701251	.	-	0	Parent=Os01t0968100-00
Chr01	irgsp1_rep	mRNA	42705112	42705375	.	-	.	ID=Os01t0968200-00;Name=Os01t0968200-00;Locus_id=Os01g0968200;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8SA02 (UniProt);TENOR=Os01t0968200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	42705112	42705375	.	-	0	Parent=Os01t0968200-00
Chr01	irgsp1_rep	mRNA	42706524	42707981	.	+	.	ID=Os01t0968300-01;Name=Os01t0968300-01;Locus_id=Os01g0968300;Note=Root cap family protein.;Transcript_evidence=AK122054 (DDBJ%2C Best hit);ORF_evidence=NP_001104848.1 (RefSeq);InterPro=Root cap (IPR009646);NIAS_FLcDNA=J033114J03;Expression=AK122054;TENOR=Os01t0968300-01;KEGG=Os01t0968300-01
Chr01	irgsp1_rep	five_prime_UTR	42706524	42706676	.	+	.	Parent=Os01t0968300-01
Chr01	irgsp1_rep	CDS	42706677	42706947	.	+	0	Parent=Os01t0968300-01
Chr01	irgsp1_rep	CDS	42707053	42707774	.	+	2	Parent=Os01t0968300-01
Chr01	irgsp1_rep	three_prime_UTR	42707775	42707981	.	+	.	Parent=Os01t0968300-01
Chr01	irgsp1_rep	mRNA	42707008	42707730	.	-	.	ID=Os01t0968350-00;Name=Os01t0968350-00;Locus_id=Os01g0968350;Note=Hypothetical gene.;Transcript_evidence=EU945402 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0968350-00
Chr01	irgsp1_rep	five_prime_UTR	42707595	42707730	.	-	.	Parent=Os01t0968350-00
Chr01	irgsp1_rep	CDS	42707008	42707594	.	-	0	Parent=Os01t0968350-00
Chr01	irgsp1_rep	mRNA	42710785	42712054	.	+	.	ID=Os01t0968400-00;Name=Os01t0968400-00;Locus_id=Os01g0968400;Note=Root cap family protein.;Transcript_evidence=EU967403 (DDBJ);ORF_evidence=NP_001152256.1 (RefSeq);InterPro=Root cap (IPR009646);TENOR=Os01t0968400-00;KEGG=Os01t0968400-00
Chr01	irgsp1_rep	five_prime_UTR	42710785	42710817	.	+	.	Parent=Os01t0968400-00
Chr01	irgsp1_rep	CDS	42710818	42711115	.	+	0	Parent=Os01t0968400-00
Chr01	irgsp1_rep	CDS	42711205	42711932	.	+	2	Parent=Os01t0968400-00
Chr01	irgsp1_rep	three_prime_UTR	42711933	42712054	.	+	.	Parent=Os01t0968400-00
Chr01	irgsp1_rep	mRNA	42712943	42714451	.	-	.	ID=Os01t0968500-00;Name=Os01t0968500-00;Locus_id=Os01g0968500;Note=Similar to triacylglycerol lipase.;Transcript_evidence=BT041092 (DDBJ);ORF_evidence=NP_001149813.1 (RefSeq);TENOR=Os01t0968500-00;KEGG=Os01t0968500-00
Chr01	irgsp1_rep	CDS	42713726	42714451	.	-	0	Parent=Os01t0968500-00
Chr01	irgsp1_rep	three_prime_UTR	42713686	42713725	.	-	.	Parent=Os01t0968500-00
Chr01	irgsp1_rep	three_prime_UTR	42712943	42713614	.	-	.	Parent=Os01t0968500-00
Chr01	irgsp1_rep	mRNA	42715713	42723434	.	+	.	ID=Os01t0968600-00;Name=Os01t0968600-00;Locus_id=Os01g0968600;Note=Leucine-rich repeat%2C cysteine-containing subtype domain containing protein.;Transcript_evidence=AK356760 (DDBJ);ORF_evidence=B8A9V8 (UniProt);InterPro=Leucine-rich repeat%2C cysteine-containing subtype (IPR006553),BTB/POZ fold (IPR011333),BTB/Kelch-associated (IPR011705);TENOR=Os01t0968600-00
Chr01	irgsp1_rep	five_prime_UTR	42715713	42715723	.	+	.	Parent=Os01t0968600-00
Chr01	irgsp1_rep	CDS	42715724	42715908	.	+	0	Parent=Os01t0968600-00
Chr01	irgsp1_rep	CDS	42715995	42716051	.	+	1	Parent=Os01t0968600-00
Chr01	irgsp1_rep	CDS	42716159	42716285	.	+	1	Parent=Os01t0968600-00
Chr01	irgsp1_rep	CDS	42716629	42716764	.	+	0	Parent=Os01t0968600-00
Chr01	irgsp1_rep	CDS	42716868	42716917	.	+	2	Parent=Os01t0968600-00
Chr01	irgsp1_rep	CDS	42717620	42717708	.	+	0	Parent=Os01t0968600-00
Chr01	irgsp1_rep	CDS	42717797	42717905	.	+	1	Parent=Os01t0968600-00
Chr01	irgsp1_rep	CDS	42718077	42718113	.	+	0	Parent=Os01t0968600-00
Chr01	irgsp1_rep	CDS	42718230	42718375	.	+	2	Parent=Os01t0968600-00
Chr01	irgsp1_rep	CDS	42718789	42719335	.	+	0	Parent=Os01t0968600-00
Chr01	irgsp1_rep	CDS	42719446	42719706	.	+	2	Parent=Os01t0968600-00
Chr01	irgsp1_rep	CDS	42719878	42720023	.	+	2	Parent=Os01t0968600-00
Chr01	irgsp1_rep	CDS	42720624	42720965	.	+	0	Parent=Os01t0968600-00
Chr01	irgsp1_rep	CDS	42721058	42721298	.	+	0	Parent=Os01t0968600-00
Chr01	irgsp1_rep	CDS	42721375	42721430	.	+	2	Parent=Os01t0968600-00
Chr01	irgsp1_rep	CDS	42721800	42721880	.	+	0	Parent=Os01t0968600-00
Chr01	irgsp1_rep	CDS	42722940	42722984	.	+	0	Parent=Os01t0968600-00
Chr01	irgsp1_rep	CDS	42723073	42723141	.	+	0	Parent=Os01t0968600-00
Chr01	irgsp1_rep	CDS	42723234	42723434	.	+	0	Parent=Os01t0968600-00
Chr01	irgsp1_rep	mRNA	42713037	42714291	.	+	.	ID=Os01t0968601-00;Name=Os01t0968601-00;Locus_id=Os01g0968601;Note=Hypothetical protein.;Transcript_evidence=EU969884 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0968601-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	42713037	42713632	.	+	.	Parent=Os01t0968601-00
Chr01	irgsp1_rep	five_prime_UTR	42713697	42713822	.	+	.	Parent=Os01t0968601-00
Chr01	irgsp1_rep	CDS	42713823	42714291	.	+	0	Parent=Os01t0968601-00
Chr01	irgsp1_rep	mRNA	42723514	42726279	.	+	.	ID=Os01t0968700-01;Name=Os01t0968700-01;Locus_id=Os01g0968700;CGSNL Gene Symbol=IPT9;CGSNL Gene Name=ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 9;Oryzabase Gene Symbol Synonym(s)=OsIPT9;Oryzabase Gene Name Synonym(s)=adenosine phosphate isopentenyltransferase 9%2C isopentenyltransferase 9;Note=tRNA isopentenyltransferase family protein.;Transcript_evidence=AK066574 (DDBJ%2C Best hit);ORF_evidence=Q33CD2 (UniProt);GO=Biological Process: tRNA processing (GO:0008033),Molecular Function: ATP binding (GO:0005524);InterPro=tRNA isopentenyltransferase (IPR002627),tRNA delta(2)-isopentenylpyrophosphate transferase (IPR018022),Zinc finger%2C double-stranded RNA binding (IPR022755);NIAS_FLcDNA=J013070D13;Oryzabase=9842;Expression=AK066574;TENOR=Os01t0968700-01;KEGG=Os01t0968700-01 (EC:2.5.1.75)
Chr01	irgsp1_rep	five_prime_UTR	42723514	42723610	.	+	.	Parent=Os01t0968700-01
Chr01	irgsp1_rep	CDS	42723611	42723875	.	+	0	Parent=Os01t0968700-01
Chr01	irgsp1_rep	CDS	42723962	42724041	.	+	2	Parent=Os01t0968700-01
Chr01	irgsp1_rep	CDS	42724187	42724255	.	+	0	Parent=Os01t0968700-01
Chr01	irgsp1_rep	CDS	42724352	42724433	.	+	0	Parent=Os01t0968700-01
Chr01	irgsp1_rep	CDS	42724544	42724638	.	+	2	Parent=Os01t0968700-01
Chr01	irgsp1_rep	CDS	42724771	42724845	.	+	0	Parent=Os01t0968700-01
Chr01	irgsp1_rep	CDS	42725032	42725394	.	+	0	Parent=Os01t0968700-01
Chr01	irgsp1_rep	CDS	42725469	42725544	.	+	0	Parent=Os01t0968700-01
Chr01	irgsp1_rep	CDS	42725643	42725806	.	+	2	Parent=Os01t0968700-01
Chr01	irgsp1_rep	CDS	42725949	42726068	.	+	0	Parent=Os01t0968700-01
Chr01	irgsp1_rep	three_prime_UTR	42726069	42726279	.	+	.	Parent=Os01t0968700-01
Chr01	irgsp1_rep	mRNA	42723960	42726781	.	+	.	ID=Os01t0968700-02;Name=Os01t0968700-02;Locus_id=Os01g0968700;CGSNL Gene Symbol=IPT9;CGSNL Gene Name=ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 9;Oryzabase Gene Symbol Synonym(s)=OsIPT9;Oryzabase Gene Name Synonym(s)=adenosine phosphate isopentenyltransferase 9%2C isopentenyltransferase 9;Note=Similar to Eukaryotic tRNA isopentenyltransferase.;Transcript_evidence=AK058395 (DDBJ%2C Best hit);ORF_evidence=Q33CD2 (UniProt);GO=Biological Process: tRNA processing (GO:0008033),Molecular Function: ATP binding (GO:0005524);InterPro=tRNA isopentenyltransferase (IPR002627);NIAS_FLcDNA=001-015-A11;Oryzabase=9842;Expression=AK058395;TENOR=Os01t0968700-02;KEGG=Os01t0968700-02 (EC:2.5.1.75)
Chr01	irgsp1_rep	five_prime_UTR	42723960	42723960	.	+	.	Parent=Os01t0968700-02
Chr01	irgsp1_rep	CDS	42723961	42724041	.	+	0	Parent=Os01t0968700-02
Chr01	irgsp1_rep	CDS	42724187	42724255	.	+	0	Parent=Os01t0968700-02
Chr01	irgsp1_rep	CDS	42724352	42724433	.	+	0	Parent=Os01t0968700-02
Chr01	irgsp1_rep	CDS	42724544	42724638	.	+	2	Parent=Os01t0968700-02
Chr01	irgsp1_rep	CDS	42724771	42724845	.	+	0	Parent=Os01t0968700-02
Chr01	irgsp1_rep	CDS	42725309	42725329	.	+	0	Parent=Os01t0968700-02
Chr01	irgsp1_rep	three_prime_UTR	42725330	42725394	.	+	.	Parent=Os01t0968700-02
Chr01	irgsp1_rep	three_prime_UTR	42725469	42725544	.	+	.	Parent=Os01t0968700-02
Chr01	irgsp1_rep	three_prime_UTR	42725643	42725806	.	+	.	Parent=Os01t0968700-02
Chr01	irgsp1_rep	three_prime_UTR	42725949	42726781	.	+	.	Parent=Os01t0968700-02
Chr01	irgsp1_rep	mRNA	42727426	42728261	.	+	.	ID=Os01t0968800-01;Name=Os01t0968800-01;Locus_id=Os01g0968800;RAP-DB Gene Symbol Synonym(s)=OsDREB1F;RAP-DB Gene Name Synonym(s)=dehydration responsive element binding protein 1F;CGSNL Gene Symbol=DREB1F;CGSNL Gene Name=DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1F;Oryzabase Gene Symbol Synonym(s)=OsERF#027%2C OsERF027%2C OsERF27%2C ERF27%2C AP2/EREBP#081%2C AP2/EREBP81%2C OsDREB1F;Oryzabase Gene Name Synonym(s)=ethylene response factor 27%2C APETALA2/ethylene-responsive element binding protein 81%2C Dehydration-responsive element-binding protein 1F;Note=DREB transcription factor%2C Drought tolerance%2C Salt and low temperature tolerance;Transcript_evidence=AY345234;ORF_evidence=Q8S9Z5;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-binding transcription factor activity (GO:0003700);InterPro=DNA-binding domain superfamily (IPR016177),AP2/ERF domain superfamily (IPR036955),AP2/ERF domain (IPR001471);Manual Curation=July 6%2C 2020;Literature_PMID=25693492,18470484;Oryzabase=10549;Expression=AY345234;TENOR=Os01t0968800-00;KEGG=Os01t0968800-00;Subcellular location=nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	42727426	42727494	.	+	.	Parent=Os01t0968800-01
Chr01	irgsp1_rep	CDS	42727495	42728154	.	+	0	Parent=Os01t0968800-01
Chr01	irgsp1_rep	three_prime_UTR	42728155	42728261	.	+	.	Parent=Os01t0968800-01
Chr01	irgsp1_rep	mRNA	42736008	42737917	.	-	.	ID=Os01t0969000-01;Name=Os01t0969000-01;Locus_id=Os01g0969000;Note=Similar to Chloroplast outer envelope 24 kD protein.;Transcript_evidence=AK103338 (DDBJ%2C Best hit);ORF_evidence=B6TM56 (UniProt);NIAS_FLcDNA=J033126A10;Expression=AK103338;TENOR=Os01t0969000-01;KEGG=Os01t0969000-01
Chr01	irgsp1_rep	five_prime_UTR	42737831	42737917	.	-	.	Parent=Os01t0969000-01
Chr01	irgsp1_rep	CDS	42737621	42737830	.	-	0	Parent=Os01t0969000-01
Chr01	irgsp1_rep	CDS	42736278	42736388	.	-	0	Parent=Os01t0969000-01
Chr01	irgsp1_rep	three_prime_UTR	42736008	42736277	.	-	.	Parent=Os01t0969000-01
Chr01	irgsp1_rep	mRNA	42738765	42742174	.	-	.	ID=Os01t0969100-01;Name=Os01t0969100-01;Locus_id=Os01g0969100;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK070623 (DDBJ%2C Best hit);ORF_evidence=B6TQB1 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023063F13;Expression=AK070623;TENOR=Os01t0969100-01;KEGG=Os01t0969100-01
Chr01	irgsp1_rep	five_prime_UTR	42742008	42742174	.	-	.	Parent=Os01t0969100-01
Chr01	irgsp1_rep	CDS	42741708	42742007	.	-	0	Parent=Os01t0969100-01
Chr01	irgsp1_rep	CDS	42741532	42741624	.	-	0	Parent=Os01t0969100-01
Chr01	irgsp1_rep	CDS	42741334	42741441	.	-	0	Parent=Os01t0969100-01
Chr01	irgsp1_rep	CDS	42740235	42740349	.	-	0	Parent=Os01t0969100-01
Chr01	irgsp1_rep	CDS	42740025	42740158	.	-	2	Parent=Os01t0969100-01
Chr01	irgsp1_rep	CDS	42739831	42739932	.	-	0	Parent=Os01t0969100-01
Chr01	irgsp1_rep	CDS	42739648	42739740	.	-	0	Parent=Os01t0969100-01
Chr01	irgsp1_rep	CDS	42739433	42739568	.	-	0	Parent=Os01t0969100-01
Chr01	irgsp1_rep	CDS	42739223	42739338	.	-	2	Parent=Os01t0969100-01
Chr01	irgsp1_rep	three_prime_UTR	42738765	42739222	.	-	.	Parent=Os01t0969100-01
Chr01	irgsp1_rep	mRNA	42752981	42754025	.	-	.	ID=Os01t0969200-01;Name=Os01t0969200-01;Locus_id=Os01g0969200;Note=Conserved hypothetical protein.;Transcript_evidence=AK241937 (DDBJ%2C Best hit);ORF_evidence=NP_001172761.1 (RefSeq);NIAS_FLcDNA=J075084B16;TENOR=Os01t0969200-01;KEGG=Os01t0969200-01
Chr01	irgsp1_rep	five_prime_UTR	42754024	42754025	.	-	.	Parent=Os01t0969200-01
Chr01	irgsp1_rep	CDS	42753967	42754023	.	-	0	Parent=Os01t0969200-01
Chr01	irgsp1_rep	CDS	42753711	42753824	.	-	0	Parent=Os01t0969200-01
Chr01	irgsp1_rep	CDS	42753581	42753613	.	-	0	Parent=Os01t0969200-01
Chr01	irgsp1_rep	CDS	42753434	42753484	.	-	0	Parent=Os01t0969200-01
Chr01	irgsp1_rep	CDS	42753253	42753342	.	-	0	Parent=Os01t0969200-01
Chr01	irgsp1_rep	three_prime_UTR	42752981	42753252	.	-	.	Parent=Os01t0969200-01
Chr01	irgsp1_rep	mRNA	42757831	42758787	.	-	.	ID=Os01t0969400-00;Name=Os01t0969400-00;Locus_id=Os01g0969400;Note=Similar to cation proton exchanger.;Transcript_evidence=BT086324 (DDBJ);ORF_evidence=XP_002310518.1 (RefSeq);TENOR=Os01t0969400-00
Chr01	irgsp1_rep	CDS	42757831	42758787	.	-	0	Parent=Os01t0969400-00
Chr01	irgsp1_rep	mRNA	42774899	42778601	.	-	.	ID=Os01t0969700-01;Name=Os01t0969700-01;Locus_id=Os01g0969700;Note=Protein kinase-like domain containing protein.;Transcript_evidence=AK071720 (DDBJ%2C Best hit);ORF_evidence=A2WZJ0 (UniProt);NIAS_FLcDNA=J023110K15;Expression=AK071720;TENOR=Os01t0969700-01;KEGG=Os01t0969700-01
Chr01	irgsp1_rep	five_prime_UTR	42778487	42778601	.	-	.	Parent=Os01t0969700-01
Chr01	irgsp1_rep	five_prime_UTR	42777068	42777115	.	-	.	Parent=Os01t0969700-01
Chr01	irgsp1_rep	CDS	42777037	42777067	.	-	0	Parent=Os01t0969700-01
Chr01	irgsp1_rep	CDS	42776832	42776863	.	-	2	Parent=Os01t0969700-01
Chr01	irgsp1_rep	CDS	42776151	42776533	.	-	0	Parent=Os01t0969700-01
Chr01	irgsp1_rep	CDS	42775937	42776067	.	-	1	Parent=Os01t0969700-01
Chr01	irgsp1_rep	CDS	42775061	42775203	.	-	2	Parent=Os01t0969700-01
Chr01	irgsp1_rep	three_prime_UTR	42774899	42775060	.	-	.	Parent=Os01t0969700-01
Chr01	irgsp1_rep	mRNA	42811967	42815157	.	+	.	ID=Os01t0970400-01;Name=Os01t0970400-01;Locus_id=Os01g0970400;Oryzabase Gene Symbol Synonym(s)=p26;Oryzabase Gene Name Synonym(s)=cap-binding protein p26;Note=Eukaryotic translation initiation factor 4E-1 (eIF4E-1) (eIF-4E-1) (mRNA cap-binding protein) (eIF-4F 25 kDa subunit) (eIF-4F p26 subunit).;Transcript_evidence=AK069207 (DDBJ%2C Best hit),AK099169 (DDBJ%2C Best hit);ORF_evidence=NP_001149588.1 (RefSeq);GO=Biological Process: translational initiation (GO:0006413),Cellular Component: cytoplasm (GO:0005737),Molecular Function: RNA binding (GO:0003723),Molecular Function: translation initiation factor activity (GO:0003743);InterPro=Translation Initiation factor eIF- 4e (IPR001040),Eukaryotic translation initiation factor 4E (eIF-4E)%2C conserved site (IPR019770),Translation Initiation factor eIF- 4e-like  domain (IPR023398);NIAS_FLcDNA=J023009L14,J023086O18;Oryzabase=14469;Expression=AK069207;TENOR=Os01t0970400-01;KEGG=Os01t0970400-01
Chr01	irgsp1_rep	five_prime_UTR	42811967	42812026	.	+	.	Parent=Os01t0970400-01
Chr01	irgsp1_rep	CDS	42812027	42812301	.	+	0	Parent=Os01t0970400-01
Chr01	irgsp1_rep	CDS	42813817	42813982	.	+	1	Parent=Os01t0970400-01
Chr01	irgsp1_rep	CDS	42814066	42814191	.	+	0	Parent=Os01t0970400-01
Chr01	irgsp1_rep	CDS	42814784	42814849	.	+	0	Parent=Os01t0970400-01
Chr01	irgsp1_rep	CDS	42814927	42814977	.	+	0	Parent=Os01t0970400-01
Chr01	irgsp1_rep	three_prime_UTR	42814978	42815157	.	+	.	Parent=Os01t0970400-01
Chr01	irgsp1_rep	mRNA	42819033	42821123	.	+	.	ID=Os01t0970500-01;Name=Os01t0970500-01;Locus_id=Os01g0970500;RAP-DB Gene Symbol Synonym(s)=OsTFIIAgamma1%2C OsTFIIA&gamma%3B1;RAP-DB Gene Name Synonym(s)=small subunit of the transcription factor IIA located on Chromosome 1;Oryzabase Gene Symbol Synonym(s)=OsTFIIAgamma1%2C OsTFIIAc-1%2C TFIIAc-1%2C TFIIAgamma-1;Oryzabase Gene Name Synonym(s)=small subunit of the transcription factor IIA located on Chromosome 1%2C Gamma subunit of transcription factor II A;Note=Small subunit of the transcription factor IIA on Chromosome 1%2C Mediation of host susceptibility to disease;Transcript_evidence=CB097192 (IR64);ORF_evidence=Q5JLE4;GO=Biological Process: transcription initiation from RNA polymerase II promoter (GO:0006367),Cellular Component: transcription factor TFIIA complex (GO:0005672);InterPro=Transcription factor IIA%2C helical (IPR009083),Transcription factor IIA%2C beta-barrel (IPR009088),Transcription initiation factor IIA%2C gamma subunit (IPR003194),Transcription initiation factor IIA%2C gamma subunit%2C N-terminal (IPR015872),Transcription initiation factor IIA%2C gamma subunit%2C C-terminal (IPR015871);Manual Curation=August 20%2C 2018;Literature_PMID=17563377;Oryzabase=10882
Chr01	irgsp1_rep	five_prime_UTR	42819033	42819138	.	+	.	Parent=Os01t0970500-01
Chr01	irgsp1_rep	five_prime_UTR	42819442	42819469	.	+	.	Parent=Os01t0970500-01
Chr01	irgsp1_rep	CDS	42819470	42819598	.	+	0	Parent=Os01t0970500-01
Chr01	irgsp1_rep	CDS	42819685	42819735	.	+	0	Parent=Os01t0970500-01
Chr01	irgsp1_rep	CDS	42820637	42820786	.	+	0	Parent=Os01t0970500-01
Chr01	irgsp1_rep	three_prime_UTR	42820787	42821123	.	+	.	Parent=Os01t0970500-01
Chr01	irgsp1_rep	mRNA	42821254	42825043	.	-	.	ID=Os01t0970600-01;Name=Os01t0970600-01;Locus_id=Os01g0970600;RAP-DB Gene Symbol Synonym(s)=OsRH58;RAP-DB Gene Name Synonym(s)=RNA helicase 58;CGSNL Gene Symbol=RH58;CGSNL Gene Name=RNA HELICASE 58;Oryzabase Gene Symbol Synonym(s)=OsRH58;Oryzabase Gene Name Synonym(s)=RNA helicase 58;Note=DEAD-box RNA helicase (EC:3.6.4.13)%2C Salt or drought stress tolerance%2C RNA chaperon activity;Transcript_evidence=AK288993;ORF_evidence=Q0JFN7;GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: ATP binding (GO:0005524);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014),Helicase superfamily 1/2%2C ATP-binding domain (IPR014001),DEAD/DEAH box helicase domain (IPR011545),Helicase%2C C-terminal (IPR001650);NIAS_FLcDNA=J090087O04;Manual Curation=January 16%2C 2019;Literature_PMID=30626336;Oryzabase=19163;TENOR=Os01t0970600-01;Subcellular location=chloroplast (GO:0009507)
Chr01	irgsp1_rep	five_prime_UTR	42824833	42825043	.	-	.	Parent=Os01t0970600-01
Chr01	irgsp1_rep	CDS	42824669	42824832	.	-	0	Parent=Os01t0970600-01
Chr01	irgsp1_rep	CDS	42824504	42824597	.	-	1	Parent=Os01t0970600-01
Chr01	irgsp1_rep	CDS	42824289	42824402	.	-	0	Parent=Os01t0970600-01
Chr01	irgsp1_rep	CDS	42824096	42824191	.	-	0	Parent=Os01t0970600-01
Chr01	irgsp1_rep	CDS	42823702	42823806	.	-	0	Parent=Os01t0970600-01
Chr01	irgsp1_rep	CDS	42823372	42823530	.	-	0	Parent=Os01t0970600-01
Chr01	irgsp1_rep	CDS	42823197	42823265	.	-	0	Parent=Os01t0970600-01
Chr01	irgsp1_rep	CDS	42822725	42822814	.	-	0	Parent=Os01t0970600-01
Chr01	irgsp1_rep	CDS	42821817	42821957	.	-	0	Parent=Os01t0970600-01
Chr01	irgsp1_rep	CDS	42821431	42821715	.	-	0	Parent=Os01t0970600-01
Chr01	irgsp1_rep	three_prime_UTR	42821254	42821430	.	-	.	Parent=Os01t0970600-01
Chr01	irgsp1_rep	mRNA	42826168	42828686	.	-	.	ID=Os01t0970700-01;Name=Os01t0970700-01;Locus_id=Os01g0970700;Note=Peptidase M48%2C Ste24p family protein.;Transcript_evidence=AK098940 (DDBJ%2C Best hit);ORF_evidence=B6TA12 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Cellular Component: membrane (GO:0016020),Molecular Function: metalloendopeptidase activity (GO:0004222);InterPro=Peptidase M48 (IPR001915);NIAS_FLcDNA=J013043D06;Expression=AK098940;TENOR=Os01t0970700-01;KEGG=Os01t0970700-01
Chr01	irgsp1_rep	five_prime_UTR	42828634	42828686	.	-	.	Parent=Os01t0970700-01
Chr01	irgsp1_rep	CDS	42828436	42828633	.	-	0	Parent=Os01t0970700-01
Chr01	irgsp1_rep	CDS	42828218	42828275	.	-	0	Parent=Os01t0970700-01
Chr01	irgsp1_rep	CDS	42827920	42827987	.	-	2	Parent=Os01t0970700-01
Chr01	irgsp1_rep	CDS	42827303	42827482	.	-	0	Parent=Os01t0970700-01
Chr01	irgsp1_rep	CDS	42827055	42827151	.	-	0	Parent=Os01t0970700-01
Chr01	irgsp1_rep	CDS	42826862	42826968	.	-	2	Parent=Os01t0970700-01
Chr01	irgsp1_rep	CDS	42826629	42826762	.	-	0	Parent=Os01t0970700-01
Chr01	irgsp1_rep	CDS	42826380	42826521	.	-	1	Parent=Os01t0970700-01
Chr01	irgsp1_rep	three_prime_UTR	42826168	42826379	.	-	.	Parent=Os01t0970700-01
Chr01	irgsp1_rep	mRNA	42826262	42828667	.	-	.	ID=Os01t0970700-02;Name=Os01t0970700-02;Locus_id=Os01g0970700;Note=Similar to Peptidase M48%2C Ste24p.;Transcript_evidence=AK058329 (DDBJ%2C Best hit);ORF_evidence=B6TA12 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Cellular Component: membrane (GO:0016020),Molecular Function: metalloendopeptidase activity (GO:0004222);InterPro=Peptidase M48 (IPR001915);NIAS_FLcDNA=001-014-C02;Expression=AK058329;TENOR=Os01t0970700-02;KEGG=Os01t0970700-02
Chr01	irgsp1_rep	five_prime_UTR	42828634	42828667	.	-	.	Parent=Os01t0970700-02
Chr01	irgsp1_rep	CDS	42828436	42828633	.	-	0	Parent=Os01t0970700-02
Chr01	irgsp1_rep	CDS	42828218	42828275	.	-	0	Parent=Os01t0970700-02
Chr01	irgsp1_rep	CDS	42827920	42827987	.	-	2	Parent=Os01t0970700-02
Chr01	irgsp1_rep	CDS	42827303	42827482	.	-	0	Parent=Os01t0970700-02
Chr01	irgsp1_rep	CDS	42827055	42827151	.	-	0	Parent=Os01t0970700-02
Chr01	irgsp1_rep	CDS	42826862	42826968	.	-	2	Parent=Os01t0970700-02
Chr01	irgsp1_rep	CDS	42826638	42826762	.	-	0	Parent=Os01t0970700-02
Chr01	irgsp1_rep	CDS	42826380	42826521	.	-	1	Parent=Os01t0970700-02
Chr01	irgsp1_rep	three_prime_UTR	42826262	42826379	.	-	.	Parent=Os01t0970700-02
Chr01	irgsp1_rep	mRNA	42837595	42842605	.	-	.	ID=Os01t0970900-01;Name=Os01t0970900-01;Locus_id=Os01g0970900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK101688 (DDBJ%2C Best hit);ORF_evidence=A2WZJ7 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033059E20;Expression=AK101688;TENOR=Os01t0970900-01;KEGG=Os01t0970900-01
Chr01	irgsp1_rep	five_prime_UTR	42842569	42842605	.	-	.	Parent=Os01t0970900-01
Chr01	irgsp1_rep	CDS	42840847	42842568	.	-	0	Parent=Os01t0970900-01
Chr01	irgsp1_rep	three_prime_UTR	42840827	42840846	.	-	.	Parent=Os01t0970900-01
Chr01	irgsp1_rep	three_prime_UTR	42837595	42838089	.	-	.	Parent=Os01t0970900-01
Chr01	irgsp1_rep	mRNA	42840611	42842605	.	-	.	ID=Os01t0970900-02;Name=Os01t0970900-02;Locus_id=Os01g0970900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK063285 (DDBJ%2C Best hit);ORF_evidence=A2WZJ7 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-113-D07;Expression=AK063285;TENOR=Os01t0970900-02;KEGG=Os01t0970900-02
Chr01	irgsp1_rep	five_prime_UTR	42842569	42842605	.	-	.	Parent=Os01t0970900-02
Chr01	irgsp1_rep	CDS	42840847	42842568	.	-	0	Parent=Os01t0970900-02
Chr01	irgsp1_rep	three_prime_UTR	42840611	42840846	.	-	.	Parent=Os01t0970900-02
Chr01	irgsp1_rep	mRNA	42838976	42839507	.	+	.	ID=Os01t0971000-02;Name=Os01t0971000-02;Locus_id=Os01g0971000;Note=Conserved hypothetical protein.;Transcript_evidence=AK061660 (DDBJ%2C Best hit),AK120145 (DDBJ%2C Best hit);ORF_evidence=A2WZJ6 (UniProt);NIAS_FLcDNA=001-036-E01,J013028J10;Expression=AK061660;TENOR=Os01t0971000-02;KEGG=Os01t0971000-02
Chr01	irgsp1_rep	five_prime_UTR	42838976	42839033	.	+	.	Parent=Os01t0971000-02
Chr01	irgsp1_rep	CDS	42839034	42839273	.	+	0	Parent=Os01t0971000-02
Chr01	irgsp1_rep	three_prime_UTR	42839274	42839507	.	+	.	Parent=Os01t0971000-02
Chr01	irgsp1_rep	mRNA	42845781	42848071	.	+	.	ID=Os01t0971100-01;Name=Os01t0971100-01;Locus_id=Os01g0971100;Oryzabase Gene Symbol Synonym(s)=OsDi19-5;Oryzabase Gene Name Synonym(s)=drought-induced 19-5;Note=Drought induced 19 family protein.;Transcript_evidence=AK069516 (DDBJ%2C Best hit);ORF_evidence=Q5JME8 (UniProt);InterPro=Drought induced 19/ RING finger protein 114 (IPR008598);NIAS_FLcDNA=J023022E04;Oryzabase=18580;Expression=AK069516;TENOR=Os01t0971100-01;KEGG=Os01t0971100-01
Chr01	irgsp1_rep	five_prime_UTR	42845781	42845901	.	+	.	Parent=Os01t0971100-01
Chr01	irgsp1_rep	CDS	42845902	42845986	.	+	0	Parent=Os01t0971100-01
Chr01	irgsp1_rep	CDS	42846614	42846726	.	+	2	Parent=Os01t0971100-01
Chr01	irgsp1_rep	CDS	42847294	42847371	.	+	0	Parent=Os01t0971100-01
Chr01	irgsp1_rep	CDS	42847473	42847696	.	+	0	Parent=Os01t0971100-01
Chr01	irgsp1_rep	CDS	42847798	42847906	.	+	1	Parent=Os01t0971100-01
Chr01	irgsp1_rep	three_prime_UTR	42847907	42848071	.	+	.	Parent=Os01t0971100-01
Chr01	irgsp1_rep	mRNA	42848360	42852984	.	-	.	ID=Os01t0971200-01;Name=Os01t0971200-01;Locus_id=Os01g0971200;Note=Protein of unknown function DUF707 family protein.;Transcript_evidence=AK101766 (DDBJ%2C Best hit);ORF_evidence=B4FSQ8 (UniProt);InterPro=Protein of unknown function DUF707 (IPR007877);NIAS_FLcDNA=J033064F20;Expression=AK101766;TENOR=Os01t0971200-01;KEGG=Os01t0971200-01
Chr01	irgsp1_rep	five_prime_UTR	42852692	42852984	.	-	.	Parent=Os01t0971200-01
Chr01	irgsp1_rep	five_prime_UTR	42851820	42851943	.	-	.	Parent=Os01t0971200-01
Chr01	irgsp1_rep	CDS	42851791	42851819	.	-	0	Parent=Os01t0971200-01
Chr01	irgsp1_rep	CDS	42851603	42851711	.	-	1	Parent=Os01t0971200-01
Chr01	irgsp1_rep	CDS	42851374	42851517	.	-	0	Parent=Os01t0971200-01
Chr01	irgsp1_rep	CDS	42851071	42851175	.	-	0	Parent=Os01t0971200-01
Chr01	irgsp1_rep	CDS	42850534	42850617	.	-	0	Parent=Os01t0971200-01
Chr01	irgsp1_rep	CDS	42850180	42850295	.	-	0	Parent=Os01t0971200-01
Chr01	irgsp1_rep	CDS	42849996	42850097	.	-	1	Parent=Os01t0971200-01
Chr01	irgsp1_rep	CDS	42849805	42849918	.	-	1	Parent=Os01t0971200-01
Chr01	irgsp1_rep	CDS	42849486	42849542	.	-	1	Parent=Os01t0971200-01
Chr01	irgsp1_rep	CDS	42849345	42849411	.	-	1	Parent=Os01t0971200-01
Chr01	irgsp1_rep	CDS	42849022	42849075	.	-	0	Parent=Os01t0971200-01
Chr01	irgsp1_rep	CDS	42848868	42848942	.	-	0	Parent=Os01t0971200-01
Chr01	irgsp1_rep	CDS	42848743	42848778	.	-	0	Parent=Os01t0971200-01
Chr01	irgsp1_rep	CDS	42848532	42848648	.	-	0	Parent=Os01t0971200-01
Chr01	irgsp1_rep	three_prime_UTR	42848360	42848531	.	-	.	Parent=Os01t0971200-01
Chr01	irgsp1_rep	mRNA	42848228	42849408	.	-	.	ID=Os01t0971200-02;Name=Os01t0971200-02;Locus_id=Os01g0971200;Note=Similar to Lysine ketoglutarate reductase trans-splicing related 1.;Transcript_evidence=AK064075 (DDBJ%2C Best hit);ORF_evidence=B4FSQ8 (UniProt);InterPro=Protein of unknown function DUF707 (IPR007877);NIAS_FLcDNA=001-125-H12;Expression=AK064075;TENOR=Os01t0971200-02;KEGG=Os01t0971200-02
Chr01	irgsp1_rep	five_prime_UTR	42849408	42849408	.	-	.	Parent=Os01t0971200-02
Chr01	irgsp1_rep	CDS	42849345	42849407	.	-	0	Parent=Os01t0971200-02
Chr01	irgsp1_rep	CDS	42849022	42849075	.	-	0	Parent=Os01t0971200-02
Chr01	irgsp1_rep	CDS	42848868	42848942	.	-	0	Parent=Os01t0971200-02
Chr01	irgsp1_rep	CDS	42848743	42848778	.	-	0	Parent=Os01t0971200-02
Chr01	irgsp1_rep	CDS	42848532	42848648	.	-	0	Parent=Os01t0971200-02
Chr01	irgsp1_rep	three_prime_UTR	42848228	42848531	.	-	.	Parent=Os01t0971200-02
Chr01	irgsp1_rep	mRNA	42848539	42850054	.	+	.	ID=Os01t0971301-00;Name=Os01t0971301-00;Locus_id=Os01g0971301;Note=Non-protein coding transcript.;Transcript_evidence=BT016843 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0971301-00
Chr01	irgsp1_rep	exon	42848539	42848638	.	+	.	Parent=Os01t0971301-00
Chr01	irgsp1_rep	exon	42848813	42848992	.	+	.	Parent=Os01t0971301-00
Chr01	irgsp1_rep	exon	42849338	42849413	.	+	.	Parent=Os01t0971301-00
Chr01	irgsp1_rep	exon	42849490	42849525	.	+	.	Parent=Os01t0971301-00
Chr01	irgsp1_rep	exon	42849792	42849914	.	+	.	Parent=Os01t0971301-00
Chr01	irgsp1_rep	exon	42849991	42850054	.	+	.	Parent=Os01t0971301-00
Chr01	irgsp1_rep	mRNA	42855657	42857462	.	+	.	ID=Os01t0971400-01;Name=Os01t0971400-01;Locus_id=Os01g0971400;Note=Similar to Cysteine proteinase.;Transcript_evidence=AK105881 (DDBJ%2C Best hit),AK059528 (DDBJ%2C Best hit),AK106011 (DDBJ%2C Best hit),AK119182 (DDBJ%2C Best hit);ORF_evidence=NP_001150119.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase%2C cysteine peptidase active site (IPR000169),Peptidase C1A%2C papain C-terminal (IPR000668),Peptidase C1A%2C papain (IPR013128),Proteinase inhibitor I29%2C cathepsin propeptide (IPR013201);NIAS_FLcDNA=001-204-D02,001-029-D05,001-206-B02,001-037-H03;Oryzabase=14984;TENOR=Os01t0971400-01
Chr01	irgsp1_rep	five_prime_UTR	42855657	42855706	.	+	.	Parent=Os01t0971400-01
Chr01	irgsp1_rep	CDS	42855707	42856585	.	+	0	Parent=Os01t0971400-01
Chr01	irgsp1_rep	CDS	42856950	42857168	.	+	0	Parent=Os01t0971400-01
Chr01	irgsp1_rep	three_prime_UTR	42857169	42857462	.	+	.	Parent=Os01t0971400-01
Chr01	irgsp1_rep	mRNA	42858783	42860399	.	+	.	ID=Os01t0971500-01;Name=Os01t0971500-01;Locus_id=Os01g0971500;Note=Similar to CytoChrome b5.;Transcript_evidence=AK120840 (DDBJ%2C Best hit);ORF_evidence=A2WZK1 (UniProt);GO=Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome b5 (IPR001199),CytoChrome b5%2C heme-binding site (IPR018506);NIAS_FLcDNA=J023022G15;Expression=AK120840;TENOR=Os01t0971500-01;KEGG=Os01t0971500-01
Chr01	irgsp1_rep	five_prime_UTR	42858783	42858971	.	+	.	Parent=Os01t0971500-01
Chr01	irgsp1_rep	CDS	42858972	42859055	.	+	0	Parent=Os01t0971500-01
Chr01	irgsp1_rep	CDS	42859821	42859887	.	+	0	Parent=Os01t0971500-01
Chr01	irgsp1_rep	CDS	42859978	42860234	.	+	2	Parent=Os01t0971500-01
Chr01	irgsp1_rep	three_prime_UTR	42860235	42860399	.	+	.	Parent=Os01t0971500-01
Chr01	irgsp1_rep	mRNA	42858983	42860280	.	-	.	ID=Os01t0971550-00;Name=Os01t0971550-00;Locus_id=Os01g0971550;Note=Non-protein coding transcript.;Transcript_evidence=BT016918 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0971550-00
Chr01	irgsp1_rep	exon	42859965	42860280	.	-	.	Parent=Os01t0971550-00
Chr01	irgsp1_rep	exon	42859827	42859870	.	-	.	Parent=Os01t0971550-00
Chr01	irgsp1_rep	exon	42858983	42859060	.	-	.	Parent=Os01t0971550-00
Chr01	irgsp1_rep	mRNA	42860834	42866614	.	-	.	ID=Os01t0971600-01;Name=Os01t0971600-01;Locus_id=Os01g0971600;Oryzabase Gene Symbol Synonym(s)=OsSTA45;Note=Similar to Sn-glycerol-3-phosphate dehydrogenase (Fragment).;Transcript_evidence=AK070366 (DDBJ%2C Best hit);ORF_evidence=NP_001150493.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: glycerol-3-phosphate metabolic process (GO:0006072),Biological Process: glycerol-3-phosphate catabolic process (GO:0046168),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: cytoplasm (GO:0005737),Cellular Component: glycerol-3-phosphate dehydrogenase complex (GO:0009331),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: glycerol-3-phosphate dehydrogenase [NAD+] activity (GO:0004367),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: protein homodimerization activity (GO:0042803),Molecular Function: coenzyme binding (GO:0050662),Molecular Function: NAD binding (GO:0051287);InterPro=Glycerol-3-phosphate dehydrogenase%2C NAD-dependent%2C C-terminal (IPR006109),Glycerol-3-phosphate dehydrogenase%2C NAD-dependent (IPR006168),6-phosphogluconate dehydrogenase%2C C-terminal-like (IPR008927),Glycerol-3-phosphate dehydrogenase%2C NAD-dependent%2C N-terminal (IPR011128),Dehydrogenase%2C multihelical (IPR013328),NAD(P)-binding domain (IPR016040),Glycerol-3-phosphate dehydrogenase%2C NAD-dependent%2C eukaryotic (IPR017751);NIAS_FLcDNA=J023050E11;Oryzabase=19351;Expression=AK070366;TENOR=Os01t0971600-01;KEGG=Os01t0971600-01 (EC:1.1.1.8)
Chr01	irgsp1_rep	five_prime_UTR	42866275	42866614	.	-	.	Parent=Os01t0971600-01
Chr01	irgsp1_rep	CDS	42866163	42866274	.	-	0	Parent=Os01t0971600-01
Chr01	irgsp1_rep	CDS	42865342	42865418	.	-	2	Parent=Os01t0971600-01
Chr01	irgsp1_rep	CDS	42865186	42865258	.	-	0	Parent=Os01t0971600-01
Chr01	irgsp1_rep	CDS	42864612	42864829	.	-	2	Parent=Os01t0971600-01
Chr01	irgsp1_rep	CDS	42864420	42864527	.	-	0	Parent=Os01t0971600-01
Chr01	irgsp1_rep	CDS	42864254	42864317	.	-	0	Parent=Os01t0971600-01
Chr01	irgsp1_rep	CDS	42864137	42864174	.	-	2	Parent=Os01t0971600-01
Chr01	irgsp1_rep	CDS	42863932	42864052	.	-	0	Parent=Os01t0971600-01
Chr01	irgsp1_rep	CDS	42863807	42863861	.	-	2	Parent=Os01t0971600-01
Chr01	irgsp1_rep	CDS	42863575	42863623	.	-	1	Parent=Os01t0971600-01
Chr01	irgsp1_rep	CDS	42863362	42863491	.	-	0	Parent=Os01t0971600-01
Chr01	irgsp1_rep	CDS	42861194	42861204	.	-	2	Parent=Os01t0971600-01
Chr01	irgsp1_rep	three_prime_UTR	42860834	42861193	.	-	.	Parent=Os01t0971600-01
Chr01	irgsp1_rep	mRNA	42870524	42872637	.	-	.	ID=Os01t0971700-01;Name=Os01t0971700-01;Locus_id=Os01g0971700;Note=Streptomyces cyclase/dehydrase family protein.;Transcript_evidence=AK105975 (DDBJ%2C Best hit),AK059198 (DDBJ%2C Best hit);ORF_evidence=Q9ZSI3 (UniProt);InterPro=Streptomyces cyclase/dehydrase (IPR005031),START-like domain (IPR023393);NIAS_FLcDNA=001-205-F06,001-024-A06;TENOR=Os01t0971700-01
Chr01	irgsp1_rep	five_prime_UTR	42872605	42872637	.	-	.	Parent=Os01t0971700-01
Chr01	irgsp1_rep	CDS	42872170	42872604	.	-	0	Parent=Os01t0971700-01
Chr01	irgsp1_rep	CDS	42871930	42872103	.	-	0	Parent=Os01t0971700-01
Chr01	irgsp1_rep	CDS	42871308	42871490	.	-	0	Parent=Os01t0971700-01
Chr01	irgsp1_rep	CDS	42871079	42871093	.	-	0	Parent=Os01t0971700-01
Chr01	irgsp1_rep	three_prime_UTR	42870987	42871078	.	-	.	Parent=Os01t0971700-01
Chr01	irgsp1_rep	three_prime_UTR	42870524	42870882	.	-	.	Parent=Os01t0971700-01
Chr01	irgsp1_rep	mRNA	42874273	42875515	.	-	.	ID=Os01t0971800-01;Name=Os01t0971800-01;Locus_id=Os01g0971800;RAP-DB Gene Symbol Synonym(s)=OsPCL1;RAP-DB Gene Name Synonym(s)=PHYTOCLOCK 1;CGSNL Gene Symbol=PCL1;CGSNL Gene Name=PHYTOCLOCK 1;Oryzabase Gene Symbol Synonym(s)=OsPCL1;Oryzabase Gene Name Synonym(s)=PCL1 homolog;Note=Transcription factor with a GARP DNA-binding domain%2C Photoperiodic control of flowering time%2C Clock associated-component;Transcript_evidence=AB206578,AY581256 (Zhonghua11);ORF_evidence=Q94DH3;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeobox domain-like (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930),Myb domain%2C plants (IPR006447);Manual Curation=September 8%2C 2017;Literature_PMID=17132630,16164597;Oryzabase=7305;Expression=AY581256;TENOR=Os01t0971800-00;KEGG=Os01t0971800-00
Chr01	irgsp1_rep	five_prime_UTR	42875299	42875515	.	-	.	Parent=Os01t0971800-01
Chr01	irgsp1_rep	CDS	42874582	42875298	.	-	0	Parent=Os01t0971800-01
Chr01	irgsp1_rep	three_prime_UTR	42874273	42874581	.	-	.	Parent=Os01t0971800-01
Chr01	irgsp1_rep	mRNA	42876576	42882963	.	-	.	ID=Os01t0971900-01;Name=Os01t0971900-01;Locus_id=Os01g0971900;Note=Similar to BPM.;Transcript_evidence=AK067739 (DDBJ%2C Best hit);ORF_evidence=B7F8F5 (UniProt);GO=Molecular Function: RNA binding (GO:0003723),Molecular Function: binding (GO:0005488);InterPro=Pumilio RNA-binding repeat (IPR001313),Armadillo-like helical (IPR011989),Nucleic acid binding NABP (IPR012940),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013120L17;Expression=AK067739;TENOR=Os01t0971900-01;KEGG=Os01t0971900-01
Chr01	irgsp1_rep	five_prime_UTR	42882578	42882963	.	-	.	Parent=Os01t0971900-01
Chr01	irgsp1_rep	CDS	42882122	42882577	.	-	0	Parent=Os01t0971900-01
Chr01	irgsp1_rep	CDS	42879792	42881038	.	-	0	Parent=Os01t0971900-01
Chr01	irgsp1_rep	CDS	42879374	42879515	.	-	1	Parent=Os01t0971900-01
Chr01	irgsp1_rep	CDS	42879193	42879300	.	-	0	Parent=Os01t0971900-01
Chr01	irgsp1_rep	CDS	42878541	42878753	.	-	0	Parent=Os01t0971900-01
Chr01	irgsp1_rep	CDS	42878320	42878430	.	-	0	Parent=Os01t0971900-01
Chr01	irgsp1_rep	CDS	42877565	42877759	.	-	0	Parent=Os01t0971900-01
Chr01	irgsp1_rep	CDS	42877239	42877413	.	-	0	Parent=Os01t0971900-01
Chr01	irgsp1_rep	CDS	42877107	42877144	.	-	2	Parent=Os01t0971900-01
Chr01	irgsp1_rep	three_prime_UTR	42876576	42877106	.	-	.	Parent=Os01t0971900-01
Chr01	irgsp1_rep	mRNA	42884953	42886230	.	+	.	ID=Os01t0972000-01;Name=Os01t0972000-01;Locus_id=Os01g0972000;Oryzabase Gene Symbol Synonym(s)=OsRFPH2-3;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPH2-3%2C RING-H2 protein 3;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK106003 (DDBJ%2C Best hit);ORF_evidence=A2WZK8 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Domain of unknown function DUF1117 (IPR010543),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=001-206-A03;Oryzabase=11764;Expression=AK106003;TENOR=Os01t0972000-01;KEGG=Os01t0972000-01 (EC:6.3.2.19)
Chr01	irgsp1_rep	five_prime_UTR	42884953	42885004	.	+	.	Parent=Os01t0972000-01
Chr01	irgsp1_rep	CDS	42885005	42886009	.	+	0	Parent=Os01t0972000-01
Chr01	irgsp1_rep	three_prime_UTR	42886010	42886230	.	+	.	Parent=Os01t0972000-01
Chr01	irgsp1_rep	mRNA	42905570	42907462	.	-	.	ID=Os01t0972200-01;Name=Os01t0972200-01;Locus_id=Os01g0972200;RAP-DB Gene Symbol Synonym(s)=OsZIP1;RAP-DB Gene Name Synonym(s)=zinc transporter 1%2C Zn-regulated transporter 1;CGSNL Gene Symbol=ZIP1;CGSNL Gene Name=ZINC TRANSPORTER 1;Oryzabase Gene Symbol Synonym(s)=OsZIP1;Oryzabase Gene Name Synonym(s)=zinc transporter 1%2C Zrt-Irt-like protein 1%2C Zinc-regulated transporter 1;Note=Zinc transporter%2C Metal-detoxified transporter%2C "Detoxification of excess Zn%2C Cu and Cd";Transcript_evidence=AY302058;ORF_evidence=Q94DG6;GO=Biological Process: metal ion transport (GO:0030001),Biological Process: transmembrane transport (GO:0055085),Molecular Function: metal ion transmembrane transporter activity (GO:0046873),Cellular Component: membrane (GO:0016020);InterPro=Zinc/iron permease (IPR003689);Manual Curation=July 18%2C 2019;Literature_PMID=31248369;Oryzabase=6311;Expression=AY302058;TENOR=Os01t0972200-00;KEGG=Os01t0972200-00;Subcellular location=endoplasmic reticulum (GO:0005783), plasma membrane (GO:0005886)
Chr01	irgsp1_rep	five_prime_UTR	42907410	42907462	.	-	.	Parent=Os01t0972200-01
Chr01	irgsp1_rep	CDS	42906743	42907409	.	-	0	Parent=Os01t0972200-01
Chr01	irgsp1_rep	CDS	42905785	42906176	.	-	2	Parent=Os01t0972200-01
Chr01	irgsp1_rep	three_prime_UTR	42905570	42905784	.	-	.	Parent=Os01t0972200-01
Chr01	irgsp1_rep	mRNA	42917737	42918706	.	-	.	ID=Os01t0972300-01;Name=Os01t0972300-01;Locus_id=Os01g0972300;Note=DVL family protein.;Transcript_evidence=AK062432 (DDBJ%2C Best hit);ORF_evidence=B8A9X1 (UniProt);InterPro=DVL (IPR012552);NIAS_FLcDNA=001-102-H11;Expression=AK062432;TENOR=Os01t0972300-01;KEGG=Os01t0972300-01
Chr01	irgsp1_rep	five_prime_UTR	42918514	42918706	.	-	.	Parent=Os01t0972300-01
Chr01	irgsp1_rep	CDS	42918139	42918513	.	-	0	Parent=Os01t0972300-01
Chr01	irgsp1_rep	three_prime_UTR	42917737	42918138	.	-	.	Parent=Os01t0972300-01
Chr01	irgsp1_rep	mRNA	42946775	42948670	.	+	.	ID=Os01t0972800-01;Name=Os01t0972800-01;Locus_id=Os01g0972800;CGSNL Gene Symbol=WRKY17;CGSNL Gene Name=RICE WRKY GENE17;Oryzabase Gene Symbol Synonym(s)=OsWRKY17;Oryzabase Gene Name Synonym(s)=Rice WRKY gene17;Note=WRKY1 (WRKY transcription factor 17).;Transcript_evidence=AK110625 (DDBJ%2C Best hit);ORF_evidence=Q7E0X2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);NIAS_FLcDNA=002-169-B02;Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6528;Expression=AK110625;TENOR=Os01t0972800-01;KEGG=Os01t0972800-01
Chr01	irgsp1_rep	five_prime_UTR	42946775	42946807	.	+	.	Parent=Os01t0972800-01
Chr01	irgsp1_rep	CDS	42946808	42947193	.	+	0	Parent=Os01t0972800-01
Chr01	irgsp1_rep	CDS	42947394	42947546	.	+	1	Parent=Os01t0972800-01
Chr01	irgsp1_rep	CDS	42947931	42948624	.	+	1	Parent=Os01t0972800-01
Chr01	irgsp1_rep	three_prime_UTR	42948625	42948670	.	+	.	Parent=Os01t0972800-01
Chr01	irgsp1_rep	mRNA	42949418	42952679	.	+	.	ID=Os01t0972900-01;Name=Os01t0972900-01;Locus_id=Os01g0972900;Oryzabase Gene Symbol Synonym(s)=OsWD40-33%2C OsCCS52B;Oryzabase Gene Name Synonym(s)=cell cycle switch 52 B%2C cell cycle switch 52B%2C B-type cell cycle switch 52;Note=Similar to Clone ZZD405 mRNA sequence. (Fragment).;Transcript_evidence=AK109536 (DDBJ%2C Best hit);ORF_evidence=B6T9C7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=002-119-D01;Oryzabase=10714;Expression=AK109536;TENOR=Os01t0972900-01;KEGG=Os01t0972900-01
Chr01	irgsp1_rep	five_prime_UTR	42949418	42949560	.	+	.	Parent=Os01t0972900-01
Chr01	irgsp1_rep	CDS	42949561	42950043	.	+	0	Parent=Os01t0972900-01
Chr01	irgsp1_rep	CDS	42950152	42950379	.	+	0	Parent=Os01t0972900-01
Chr01	irgsp1_rep	CDS	42950843	42951022	.	+	0	Parent=Os01t0972900-01
Chr01	irgsp1_rep	CDS	42951157	42951411	.	+	0	Parent=Os01t0972900-01
Chr01	irgsp1_rep	CDS	42951493	42951597	.	+	0	Parent=Os01t0972900-01
Chr01	irgsp1_rep	CDS	42952019	42952081	.	+	0	Parent=Os01t0972900-01
Chr01	irgsp1_rep	CDS	42952168	42952236	.	+	0	Parent=Os01t0972900-01
Chr01	irgsp1_rep	CDS	42952313	42952366	.	+	0	Parent=Os01t0972900-01
Chr01	irgsp1_rep	three_prime_UTR	42952367	42952679	.	+	.	Parent=Os01t0972900-01
Chr01	irgsp1_rep	mRNA	42954163	42956626	.	+	.	ID=Os01t0973000-01;Name=Os01t0973000-01;Locus_id=Os01g0973000;Note=HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 domain containing protein.;Transcript_evidence=AK103593 (DDBJ%2C Best hit);ORF_evidence=B6TML6 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 (IPR006402),Pyrimidine 5-nucleotidase (IPR010237),HAD-like domain (IPR023214);NIAS_FLcDNA=J033133D12;Expression=AK103593;TENOR=Os01t0973000-01;KEGG=Os01t0973000-01
Chr01	irgsp1_rep	five_prime_UTR	42954163	42954405	.	+	.	Parent=Os01t0973000-01
Chr01	irgsp1_rep	five_prime_UTR	42954645	42954650	.	+	.	Parent=Os01t0973000-01
Chr01	irgsp1_rep	CDS	42954651	42954711	.	+	0	Parent=Os01t0973000-01
Chr01	irgsp1_rep	CDS	42955091	42955156	.	+	2	Parent=Os01t0973000-01
Chr01	irgsp1_rep	CDS	42955242	42955339	.	+	2	Parent=Os01t0973000-01
Chr01	irgsp1_rep	CDS	42955462	42955499	.	+	0	Parent=Os01t0973000-01
Chr01	irgsp1_rep	CDS	42955571	42955658	.	+	1	Parent=Os01t0973000-01
Chr01	irgsp1_rep	CDS	42955743	42956015	.	+	0	Parent=Os01t0973000-01
Chr01	irgsp1_rep	CDS	42956112	42956177	.	+	0	Parent=Os01t0973000-01
Chr01	irgsp1_rep	CDS	42956266	42956421	.	+	0	Parent=Os01t0973000-01
Chr01	irgsp1_rep	three_prime_UTR	42956422	42956626	.	+	.	Parent=Os01t0973000-01
Chr01	irgsp1_rep	mRNA	42960110	42964990	.	+	.	ID=Os01t0973100-01;Name=Os01t0973100-01;Locus_id=Os01g0973100;Note=Hypothetical conserved gene.;Transcript_evidence=AK241860 (DDBJ%2C Best hit);ORF_evidence=B9EWZ9 (UniProt);InterPro=Glucoamylase%2C putatuve (IPR004314);NIAS_FLcDNA=J065216G12;TENOR=Os01t0973100-01;KEGG=Os01t0973100-01
Chr01	irgsp1_rep	five_prime_UTR	42960110	42960145	.	+	.	Parent=Os01t0973100-01
Chr01	irgsp1_rep	CDS	42960146	42960334	.	+	0	Parent=Os01t0973100-01
Chr01	irgsp1_rep	CDS	42960466	42960552	.	+	0	Parent=Os01t0973100-01
Chr01	irgsp1_rep	CDS	42960681	42960899	.	+	0	Parent=Os01t0973100-01
Chr01	irgsp1_rep	CDS	42960974	42961144	.	+	0	Parent=Os01t0973100-01
Chr01	irgsp1_rep	CDS	42964331	42964687	.	+	0	Parent=Os01t0973100-01
Chr01	irgsp1_rep	three_prime_UTR	42964688	42964990	.	+	.	Parent=Os01t0973100-01
Chr01	irgsp1_rep	mRNA	42960464	42964671	.	-	.	ID=Os01t0973150-00;Name=Os01t0973150-00;Locus_id=Os01g0973150;Note=Hypothetical protein.;Transcript_evidence=tplb0062i11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0973150-00
Chr01	irgsp1_rep	five_prime_UTR	42964329	42964671	.	-	.	Parent=Os01t0973150-00
Chr01	irgsp1_rep	five_prime_UTR	42962605	42962763	.	-	.	Parent=Os01t0973150-00
Chr01	irgsp1_rep	five_prime_UTR	42960923	42961180	.	-	.	Parent=Os01t0973150-00
Chr01	irgsp1_rep	five_prime_UTR	42960864	42960867	.	-	.	Parent=Os01t0973150-00
Chr01	irgsp1_rep	CDS	42960727	42960863	.	-	0	Parent=Os01t0973150-00
Chr01	irgsp1_rep	CDS	42960522	42960621	.	-	1	Parent=Os01t0973150-00
Chr01	irgsp1_rep	three_prime_UTR	42960464	42960521	.	-	.	Parent=Os01t0973150-00
Chr01	irgsp1_rep	mRNA	42967465	42970167	.	-	.	ID=Os01t0973200-00;Name=Os01t0973200-00;Locus_id=Os01g0973200;Note=Hypothetical conserved gene.;Transcript_evidence=BT055732 (DDBJ);ORF_evidence=NP_001045545.2 (RefSeq);InterPro=Chromosome segregation protein Spc25 (IPR013255);TENOR=Os01t0973200-00;KEGG=Os01t0973200-00
Chr01	irgsp1_rep	five_prime_UTR	42970138	42970167	.	-	.	Parent=Os01t0973200-00
Chr01	irgsp1_rep	CDS	42969954	42970137	.	-	0	Parent=Os01t0973200-00
Chr01	irgsp1_rep	CDS	42969500	42969565	.	-	2	Parent=Os01t0973200-00
Chr01	irgsp1_rep	CDS	42969265	42969411	.	-	2	Parent=Os01t0973200-00
Chr01	irgsp1_rep	CDS	42968699	42968806	.	-	2	Parent=Os01t0973200-00
Chr01	irgsp1_rep	CDS	42968526	42968615	.	-	2	Parent=Os01t0973200-00
Chr01	irgsp1_rep	CDS	42968293	42968415	.	-	2	Parent=Os01t0973200-00
Chr01	irgsp1_rep	CDS	42967465	42967784	.	-	2	Parent=Os01t0973200-00
Chr01	irgsp1_rep	mRNA	42969932	42970167	.	+	.	ID=Os01t0973250-00;Name=Os01t0973250-00;Locus_id=Os01g0973250;Note=Non-protein coding transcript.;Transcript_evidence=EU950091 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0973250-00
Chr01	irgsp1_rep	exon	42969932	42970167	.	+	.	Parent=Os01t0973250-00
Chr01	irgsp1_rep	mRNA	42971420	42976876	.	+	.	ID=Os01t0973300-01;Name=Os01t0973300-01;Locus_id=Os01g0973300;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK102519 (DDBJ%2C Best hit);ORF_evidence=Q5JM89 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: membrane coat (GO:0030117),Molecular Function: binding (GO:0005488);InterPro=Clathrin/coatomer adaptor%2C adaptin-like%2C N-terminal (IPR002553),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033095N03;Expression=AK102519;TENOR=Os01t0973300-01;KEGG=Os01t0973300-01
Chr01	irgsp1_rep	five_prime_UTR	42971420	42971420	.	+	.	Parent=Os01t0973300-01
Chr01	irgsp1_rep	CDS	42971421	42971459	.	+	0	Parent=Os01t0973300-01
Chr01	irgsp1_rep	CDS	42971549	42972118	.	+	0	Parent=Os01t0973300-01
Chr01	irgsp1_rep	CDS	42972640	42972813	.	+	0	Parent=Os01t0973300-01
Chr01	irgsp1_rep	CDS	42973156	42973282	.	+	0	Parent=Os01t0973300-01
Chr01	irgsp1_rep	CDS	42973361	42973470	.	+	2	Parent=Os01t0973300-01
Chr01	irgsp1_rep	CDS	42974349	42974549	.	+	0	Parent=Os01t0973300-01
Chr01	irgsp1_rep	CDS	42974641	42975608	.	+	0	Parent=Os01t0973300-01
Chr01	irgsp1_rep	CDS	42975752	42976000	.	+	1	Parent=Os01t0973300-01
Chr01	irgsp1_rep	CDS	42976402	42976747	.	+	1	Parent=Os01t0973300-01
Chr01	irgsp1_rep	three_prime_UTR	42976748	42976876	.	+	.	Parent=Os01t0973300-01
Chr01	irgsp1_rep	mRNA	42977233	42979816	.	-	.	ID=Os01t0973400-01;Name=Os01t0973400-01;Locus_id=Os01g0973400;Note=Similar to radical SAM domain-containing protein.;Transcript_evidence=AK099210 (DDBJ%2C Best hit),AK060011 (DDBJ%2C Best hit),AK068879 (DDBJ%2C Best hit),AK104863 (DDBJ%2C Best hit);ORF_evidence=NP_565909.1 (RefSeq);GO=Biological Process: rRNA processing (GO:0006364),Cellular Component: cytoplasm (GO:0005737),Molecular Function: catalytic activity (GO:0003824),Molecular Function: RNA methyltransferase activity (GO:0008173),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=Ribosomal RNA large subunit methyltransferase RlmN%3B (IPR004383),Elongator protein 3/MiaB/NifB (IPR006638),Radical SAM (IPR007197),Radical SAM%2C alpha/beta horseshoe (IPR023404);NIAS_FLcDNA=J013060D04,006-302-E03,J013170C09,001-043-F02;Expression=AK099210;TENOR=Os01t0973400-01;KEGG=Os01t0973400-01 (EC:2.1.1.-)
Chr01	irgsp1_rep	five_prime_UTR	42979799	42979816	.	-	.	Parent=Os01t0973400-01
Chr01	irgsp1_rep	CDS	42979634	42979798	.	-	0	Parent=Os01t0973400-01
Chr01	irgsp1_rep	CDS	42979477	42979552	.	-	0	Parent=Os01t0973400-01
Chr01	irgsp1_rep	CDS	42979285	42979382	.	-	2	Parent=Os01t0973400-01
Chr01	irgsp1_rep	CDS	42978951	42979052	.	-	0	Parent=Os01t0973400-01
Chr01	irgsp1_rep	CDS	42978779	42978865	.	-	0	Parent=Os01t0973400-01
Chr01	irgsp1_rep	CDS	42978566	42978682	.	-	0	Parent=Os01t0973400-01
Chr01	irgsp1_rep	CDS	42978345	42978448	.	-	0	Parent=Os01t0973400-01
Chr01	irgsp1_rep	CDS	42977952	42978091	.	-	1	Parent=Os01t0973400-01
Chr01	irgsp1_rep	CDS	42977723	42977859	.	-	2	Parent=Os01t0973400-01
Chr01	irgsp1_rep	CDS	42977466	42977633	.	-	0	Parent=Os01t0973400-01
Chr01	irgsp1_rep	three_prime_UTR	42977233	42977465	.	-	.	Parent=Os01t0973400-01
Chr01	irgsp1_rep	mRNA	42981239	42984988	.	-	.	ID=Os01t0973500-01;Name=Os01t0973500-01;Locus_id=Os01g0973500;RAP-DB Gene Symbol Synonym(s)=OsRLCK57;RAP-DB Gene Name Synonym(s)=Receptor-Like Cytoplasmic Kinase 57;CGSNL Gene Symbol=RLCK57;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 57;Oryzabase Gene Symbol Synonym(s)=OsRLCK57;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 57;Note=Receptor-like cytoplasmic kinase%2C Positive regulation of chitin- and PGN induced immunity%2C Positive regulation of the development of tillers and panicle secondary branching;Transcript_evidence=AK069546;ORF_evidence=Q5JM84;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),Protein kinase domain (IPR000719),Serine-threonine/tyrosine-protein kinase%2C catalytic domain (IPR001245),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J023023F24;Manual Curation=July 20%2C 2020;Literature_PMID=28220451,26679011;Oryzabase=18773;Expression=AK069546;TENOR=Os01t0973500-01;KEGG=Os01t0973500-01;Subcellular location=plasma membrane (GO:0005886)
Chr01	irgsp1_rep	five_prime_UTR	42984642	42984988	.	-	.	Parent=Os01t0973500-01
Chr01	irgsp1_rep	CDS	42984584	42984641	.	-	0	Parent=Os01t0973500-01
Chr01	irgsp1_rep	CDS	42983754	42984076	.	-	2	Parent=Os01t0973500-01
Chr01	irgsp1_rep	CDS	42983538	42983673	.	-	0	Parent=Os01t0973500-01
Chr01	irgsp1_rep	CDS	42983243	42983385	.	-	2	Parent=Os01t0973500-01
Chr01	irgsp1_rep	CDS	42982980	42983103	.	-	0	Parent=Os01t0973500-01
Chr01	irgsp1_rep	CDS	42981503	42981945	.	-	2	Parent=Os01t0973500-01
Chr01	irgsp1_rep	three_prime_UTR	42981239	42981502	.	-	.	Parent=Os01t0973500-01
Chr01	irgsp1_rep	mRNA	42981649	42983962	.	+	.	ID=Os01t0973550-00;Name=Os01t0973550-00;Locus_id=Os01g0973550;Note=Hypothetical protein.;Transcript_evidence=tplb0027d05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os01t0973550-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	42981649	42981649	.	+	.	Parent=Os01t0973550-00
Chr01	irgsp1_rep	CDS	42981650	42981922	.	+	0	Parent=Os01t0973550-00
Chr01	irgsp1_rep	CDS	42982961	42983100	.	+	0	Parent=Os01t0973550-00
Chr01	irgsp1_rep	CDS	42983238	42983271	.	+	1	Parent=Os01t0973550-00
Chr01	irgsp1_rep	three_prime_UTR	42983272	42983392	.	+	.	Parent=Os01t0973550-00
Chr01	irgsp1_rep	three_prime_UTR	42983548	42983658	.	+	.	Parent=Os01t0973550-00
Chr01	irgsp1_rep	three_prime_UTR	42983739	42983962	.	+	.	Parent=Os01t0973550-00
Chr01	irgsp1_rep	mRNA	43016926	43019125	.	+	.	ID=Os01t0973600-01;Name=Os01t0973600-01;Locus_id=Os01g0973600;Note=Protein of unknown function DUF506%2C plant family protein.;Transcript_evidence=AK071351 (DDBJ%2C Best hit);ORF_evidence=NP_001147221.1 (RefSeq);InterPro=Protein of unknown function DUF506%2C plant (IPR006502);NIAS_FLcDNA=J023092O22;Expression=AK071351;TENOR=Os01t0973600-01;KEGG=Os01t0973600-01
Chr01	irgsp1_rep	five_prime_UTR	43016926	43017001	.	+	.	Parent=Os01t0973600-01
Chr01	irgsp1_rep	CDS	43017002	43017313	.	+	0	Parent=Os01t0973600-01
Chr01	irgsp1_rep	CDS	43017845	43018061	.	+	0	Parent=Os01t0973600-01
Chr01	irgsp1_rep	CDS	43018169	43018653	.	+	2	Parent=Os01t0973600-01
Chr01	irgsp1_rep	three_prime_UTR	43018654	43019125	.	+	.	Parent=Os01t0973600-01
Chr01	irgsp1_rep	mRNA	43016990	43019127	.	+	.	ID=Os01t0973600-02;Name=Os01t0973600-02;Locus_id=Os01g0973600;Note=Protein of unknown function DUF506%2C plant family protein.;Transcript_evidence=AK099265 (DDBJ%2C Best hit),AK099263 (DDBJ%2C Best hit);ORF_evidence=NP_001147221.1 (RefSeq);InterPro=Protein of unknown function DUF506%2C plant (IPR006502);NIAS_FLcDNA=J023011G21,J023011E21;Expression=AK099265;TENOR=Os01t0973600-02;KEGG=Os01t0973600-02
Chr01	irgsp1_rep	five_prime_UTR	43016990	43017001	.	+	.	Parent=Os01t0973600-02
Chr01	irgsp1_rep	CDS	43017002	43017313	.	+	0	Parent=Os01t0973600-02
Chr01	irgsp1_rep	CDS	43017845	43018061	.	+	0	Parent=Os01t0973600-02
Chr01	irgsp1_rep	CDS	43018169	43018653	.	+	2	Parent=Os01t0973600-02
Chr01	irgsp1_rep	three_prime_UTR	43018654	43019127	.	+	.	Parent=Os01t0973600-02
Chr01	irgsp1_rep	mRNA	43039984	43043949	.	+	.	ID=Os01t0974000-01;Name=Os01t0974000-01;Locus_id=Os01g0974000;CGSNL Gene Symbol=ABCI11;CGSNL Gene Name=ABC TRANSPORTER I FAMILY MEMBER 11;Oryzabase Gene Symbol Synonym(s)=OsABCI11;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCI subgroup member 11;Note=Mammalian cell entry related domain containing protein.;Transcript_evidence=AK121398 (DDBJ%2C Best hit),AK064964 (DDBJ%2C Best hit);ORF_evidence=NP_001151158.1 (RefSeq);InterPro=Mammalian cell entry-related (IPR003399);NIAS_FLcDNA=J023131K04,J013001A23;Oryzabase=12035;TENOR=Os01t0974000-01
Chr01	irgsp1_rep	five_prime_UTR	43039984	43040193	.	+	.	Parent=Os01t0974000-01
Chr01	irgsp1_rep	CDS	43040194	43040676	.	+	0	Parent=Os01t0974000-01
Chr01	irgsp1_rep	CDS	43041696	43042025	.	+	0	Parent=Os01t0974000-01
Chr01	irgsp1_rep	CDS	43042852	43042967	.	+	0	Parent=Os01t0974000-01
Chr01	irgsp1_rep	CDS	43043231	43043321	.	+	1	Parent=Os01t0974000-01
Chr01	irgsp1_rep	CDS	43043432	43043524	.	+	0	Parent=Os01t0974000-01
Chr01	irgsp1_rep	three_prime_UTR	43043525	43043949	.	+	.	Parent=Os01t0974000-01
Chr01	irgsp1_rep	mRNA	43040021	43043945	.	+	.	ID=Os01t0974000-02;Name=Os01t0974000-02;Locus_id=Os01g0974000;CGSNL Gene Symbol=ABCI11;CGSNL Gene Name=ABC TRANSPORTER I FAMILY MEMBER 11;Oryzabase Gene Symbol Synonym(s)=OsABCI11;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCI subgroup member 11;Note=Mammalian cell entry related domain containing protein.;Transcript_evidence=AK104330 (DDBJ%2C Best hit);ORF_evidence=NP_001151158.1 (RefSeq);InterPro=Mammalian cell entry-related (IPR003399);NIAS_FLcDNA=001-032-B11;Oryzabase=12035;Expression=AK104330;TENOR=Os01t0974000-02;KEGG=Os01t0974000-02
Chr01	irgsp1_rep	five_prime_UTR	43040021	43040193	.	+	.	Parent=Os01t0974000-02
Chr01	irgsp1_rep	CDS	43040194	43040676	.	+	0	Parent=Os01t0974000-02
Chr01	irgsp1_rep	CDS	43041696	43042025	.	+	0	Parent=Os01t0974000-02
Chr01	irgsp1_rep	CDS	43042852	43042967	.	+	0	Parent=Os01t0974000-02
Chr01	irgsp1_rep	CDS	43043231	43043321	.	+	1	Parent=Os01t0974000-02
Chr01	irgsp1_rep	CDS	43043432	43043524	.	+	0	Parent=Os01t0974000-02
Chr01	irgsp1_rep	three_prime_UTR	43043525	43043945	.	+	.	Parent=Os01t0974000-02
Chr01	irgsp1_rep	mRNA	43044201	43046303	.	+	.	ID=Os01t0974100-01;Name=Os01t0974100-01;Locus_id=Os01g0974100;Note=Similar to amino acid selective channel protein.;Transcript_evidence=AK071182 (DDBJ%2C Best hit);ORF_evidence=NP_001151965.1 (RefSeq);InterPro=Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 (IPR003397);NIAS_FLcDNA=J023082P21;TENOR=Os01t0974100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	43044201	43044232	.	+	.	Parent=Os01t0974100-01
Chr01	irgsp1_rep	CDS	43044233	43044346	.	+	0	Parent=Os01t0974100-01
Chr01	irgsp1_rep	CDS	43044451	43044502	.	+	0	Parent=Os01t0974100-01
Chr01	irgsp1_rep	CDS	43044781	43044812	.	+	2	Parent=Os01t0974100-01
Chr01	irgsp1_rep	CDS	43044985	43045018	.	+	0	Parent=Os01t0974100-01
Chr01	irgsp1_rep	CDS	43045328	43045395	.	+	2	Parent=Os01t0974100-01
Chr01	irgsp1_rep	three_prime_UTR	43045855	43046303	.	+	.	Parent=Os01t0974100-01
Chr01	irgsp1_rep	mRNA	43047164	43047855	.	+	.	ID=Os01t0974200-01;Name=Os01t0974200-01;Locus_id=Os01g0974200;RAP-DB Gene Symbol Synonym(s)=OsMT2c;RAP-DB Gene Name Synonym(s)=Metallothionein 2c;CGSNL Gene Symbol=MTI2B;CGSNL Gene Name=METALLOTHIONEIN I-2B;Oryzabase Gene Symbol Synonym(s)=OsMT2c%2C OsMT-I-2b%2C MT2c%2C MT-I-2b%2C MTc%2C met5%2C ricMT%2C OsMT2;Oryzabase Gene Name Synonym(s)=Metallothionein 2c%2C type 2 metallothionein c%2C metallothionein 5%2C metallothionein (MT)-like protein;Note=Metallothionein%2C Distribution of Zn to grain;Transcript_evidence=AK062796;ORF_evidence=Q5JM82;GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Metallothionein%2C family 15%2C plant (IPR000347);NIAS_FLcDNA=001-107-C08;Manual Curation=August 17%2C 2020;Literature_PMID=32772382;Oryzabase=11121;TENOR=Os01t0974200-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=cytosol (GO:0005829),nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	43047164	43047254	.	+	.	Parent=Os01t0974200-01
Chr01	irgsp1_rep	CDS	43047255	43047319	.	+	0	Parent=Os01t0974200-01
Chr01	irgsp1_rep	CDS	43047384	43047449	.	+	1	Parent=Os01t0974200-01
Chr01	irgsp1_rep	CDS	43047560	43047671	.	+	1	Parent=Os01t0974200-01
Chr01	irgsp1_rep	three_prime_UTR	43047672	43047855	.	+	.	Parent=Os01t0974200-01
Chr01	irgsp1_rep	mRNA	43047229	43047861	.	+	.	ID=Os01t0974200-02;Name=Os01t0974200-02;Locus_id=Os01g0974200;CGSNL Gene Symbol=MTI2B;CGSNL Gene Name=METALLOTHIONEIN I-2B;Oryzabase Gene Symbol Synonym(s)=OsMT2c%2C OsMT-I-2b%2C MT2c%2C MT-I-2b%2C MTc%2C met5%2C ricMT%2C OsMT2;Oryzabase Gene Name Synonym(s)=Metallothionein 2c%2C type 2 metallothionein c%2C metallothionein 5%2C metallothionein (MT)-like protein;Note=RicMT (Metallothionein-like protein).;Transcript_evidence=AK104075 (DDBJ%2C Best hit);ORF_evidence=longestORF;GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Metallothionein%2C family 15%2C plant (IPR000347);NIAS_FLcDNA=001-028-B05;Oryzabase=11121;Expression=AK104075;TENOR=Os01t0974200-02;KEGG=Os01t0974200-02
Chr01	irgsp1_rep	five_prime_UTR	43047229	43047254	.	+	.	Parent=Os01t0974200-02
Chr01	irgsp1_rep	CDS	43047255	43047319	.	+	0	Parent=Os01t0974200-02
Chr01	irgsp1_rep	CDS	43047384	43047449	.	+	1	Parent=Os01t0974200-02
Chr01	irgsp1_rep	CDS	43047560	43047671	.	+	1	Parent=Os01t0974200-02
Chr01	irgsp1_rep	three_prime_UTR	43047672	43047861	.	+	.	Parent=Os01t0974200-02
Chr01	irgsp1_rep	mRNA	43047347	43047861	.	+	.	ID=Os01t0974200-03;Name=Os01t0974200-03;Locus_id=Os01g0974200;CGSNL Gene Symbol=MTI2B;CGSNL Gene Name=METALLOTHIONEIN I-2B;Oryzabase Gene Symbol Synonym(s)=OsMT2c%2C OsMT-I-2b%2C MT2c%2C MT-I-2b%2C MTc%2C met5%2C ricMT%2C OsMT2;Oryzabase Gene Name Synonym(s)=Metallothionein 2c%2C type 2 metallothionein c%2C metallothionein 5%2C metallothionein (MT)-like protein;Note=Conserved hypothetical protein.;Transcript_evidence=AK059392 (DDBJ%2C Best hit);ORF_evidence=Q5JL12 (UniProt);NIAS_FLcDNA=001-026-H08;Oryzabase=11121;TENOR=Os01t0974200-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	43047347	43047512	.	+	.	Parent=Os01t0974200-03
Chr01	irgsp1_rep	CDS	43047513	43047671	.	+	0	Parent=Os01t0974200-03
Chr01	irgsp1_rep	three_prime_UTR	43047672	43047861	.	+	.	Parent=Os01t0974200-03
Chr01	irgsp1_rep	mRNA	43049162	43054715	.	-	.	ID=Os01t0974300-01;Name=Os01t0974300-01;Locus_id=Os01g0974300;Note=Conserved hypothetical protein.;Transcript_evidence=AK070053 (DDBJ%2C Best hit);ORF_evidence=A3A211 (UniProt);NIAS_FLcDNA=J023039H11;TENOR=Os01t0974300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	43054714	43054715	.	-	.	Parent=Os01t0974300-01
Chr01	irgsp1_rep	CDS	43054648	43054713	.	-	0	Parent=Os01t0974300-01
Chr01	irgsp1_rep	CDS	43054223	43054411	.	-	0	Parent=Os01t0974300-01
Chr01	irgsp1_rep	CDS	43053324	43053614	.	-	0	Parent=Os01t0974300-01
Chr01	irgsp1_rep	three_prime_UTR	43052187	43053323	.	-	.	Parent=Os01t0974300-01
Chr01	irgsp1_rep	three_prime_UTR	43050902	43051410	.	-	.	Parent=Os01t0974300-01
Chr01	irgsp1_rep	three_prime_UTR	43050741	43050801	.	-	.	Parent=Os01t0974300-01
Chr01	irgsp1_rep	three_prime_UTR	43050598	43050666	.	-	.	Parent=Os01t0974300-01
Chr01	irgsp1_rep	three_prime_UTR	43050200	43050400	.	-	.	Parent=Os01t0974300-01
Chr01	irgsp1_rep	three_prime_UTR	43049162	43049697	.	-	.	Parent=Os01t0974300-01
Chr01	irgsp1_rep	mRNA	43063740	43065432	.	+	.	ID=Os01t0974400-01;Name=Os01t0974400-01;Locus_id=Os01g0974400;Oryzabase Gene Symbol Synonym(s)=XBOS31%2C OsRFPHC-7;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPHC-7%2C RING-HC protein 7;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK106014 (DDBJ%2C Best hit);ORF_evidence=Q65XV2 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Ankyrin repeat (IPR002110),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=001-206-B05;Oryzabase=11145;Expression=AK106014;TENOR=Os01t0974400-01;KEGG=Os01t0974400-01
Chr01	irgsp1_rep	five_prime_UTR	43063740	43063867	.	+	.	Parent=Os01t0974400-01
Chr01	irgsp1_rep	CDS	43063868	43065208	.	+	0	Parent=Os01t0974400-01
Chr01	irgsp1_rep	three_prime_UTR	43065209	43065432	.	+	.	Parent=Os01t0974400-01
Chr01	irgsp1_rep	mRNA	43066717	43070166	.	-	.	ID=Os01t0974500-01;Name=Os01t0974500-01;Locus_id=Os01g0974500;Note=Pectinacetylesterase family protein.;Transcript_evidence=AK064109 (DDBJ%2C Best hit);ORF_evidence=B3VTB2 (UniProt);InterPro=Pectinacetylesterase (IPR004963);NIAS_FLcDNA=002-101-G02;Expression=AK064109;TENOR=Os01t0974500-01;KEGG=Os01t0974500-01
Chr01	irgsp1_rep	five_prime_UTR	43070132	43070166	.	-	.	Parent=Os01t0974500-01
Chr01	irgsp1_rep	CDS	43069702	43070131	.	-	0	Parent=Os01t0974500-01
Chr01	irgsp1_rep	CDS	43069528	43069607	.	-	2	Parent=Os01t0974500-01
Chr01	irgsp1_rep	CDS	43069313	43069402	.	-	0	Parent=Os01t0974500-01
Chr01	irgsp1_rep	CDS	43068633	43068757	.	-	0	Parent=Os01t0974500-01
Chr01	irgsp1_rep	CDS	43068103	43068163	.	-	1	Parent=Os01t0974500-01
Chr01	irgsp1_rep	CDS	43067964	43068014	.	-	0	Parent=Os01t0974500-01
Chr01	irgsp1_rep	CDS	43067770	43067847	.	-	0	Parent=Os01t0974500-01
Chr01	irgsp1_rep	CDS	43067577	43067682	.	-	0	Parent=Os01t0974500-01
Chr01	irgsp1_rep	CDS	43067315	43067460	.	-	2	Parent=Os01t0974500-01
Chr01	irgsp1_rep	CDS	43066872	43066997	.	-	0	Parent=Os01t0974500-01
Chr01	irgsp1_rep	three_prime_UTR	43066717	43066871	.	-	.	Parent=Os01t0974500-01
Chr01	irgsp1_rep	mRNA	43067737	43068175	.	+	.	ID=Os01t0974550-00;Name=Os01t0974550-00;Locus_id=Os01g0974550;Note=Non-protein coding transcript.;Transcript_evidence=EU950947 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0974550-00
Chr01	irgsp1_rep	exon	43067737	43068175	.	+	.	Parent=Os01t0974550-00
Chr01	irgsp1_rep	mRNA	43070805	43071206	.	+	.	ID=Os01t0974600-00;Name=Os01t0974600-00;Locus_id=Os01g0974600;Note=Similar to Histone H2A.;Transcript_evidence=EU944483 (DDBJ);ORF_evidence=C5XBR4 (UniProt);TENOR=Os01t0974600-00;KEGG=Os01t0974600-00
Chr01	irgsp1_rep	CDS	43070805	43071131	.	+	0	Parent=Os01t0974600-00
Chr01	irgsp1_rep	three_prime_UTR	43071132	43071206	.	+	.	Parent=Os01t0974600-00
Chr01	irgsp1_rep	mRNA	43071516	43072507	.	+	.	ID=Os01t0974701-01;Name=Os01t0974701-01;Locus_id=Os01g0974701;Note=Similar to RNA-binding glycine rich protein (RGP-2).;Transcript_evidence=AK240763 (DDBJ%2C Best hit);ORF_evidence=NP_001045556.2 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J053054L13;TENOR=Os01t0974701-01;KEGG=Os01t0974701-01
Chr01	irgsp1_rep	five_prime_UTR	43071516	43071541	.	+	.	Parent=Os01t0974701-01
Chr01	irgsp1_rep	CDS	43071542	43071668	.	+	0	Parent=Os01t0974701-01
Chr01	irgsp1_rep	CDS	43071818	43071886	.	+	2	Parent=Os01t0974701-01
Chr01	irgsp1_rep	CDS	43071990	43072096	.	+	2	Parent=Os01t0974701-01
Chr01	irgsp1_rep	CDS	43072203	43072250	.	+	0	Parent=Os01t0974701-01
Chr01	irgsp1_rep	three_prime_UTR	43072251	43072507	.	+	.	Parent=Os01t0974701-01
Chr01	irgsp1_rep	mRNA	43072763	43076466	.	-	.	ID=Os01t0974800-01;Name=Os01t0974800-01;Locus_id=Os01g0974800;Oryzabase Gene Name Synonym(s)=sPPase%2C Soluble Inorganic Pyrophosphatase;Note=Similar to AtPPa4 (Arabidopsis thaliana pyrophosphorylase 4)%3B inorganic diphosphatase.;Transcript_evidence=AK241684 (DDBJ%2C Best hit);ORF_evidence=NP_190930.1 (RefSeq);GO=Biological Process: phosphate-containing compound metabolic process (GO:0006796),Cellular Component: cytoplasm (GO:0005737),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: inorganic diphosphatase activity (GO:0004427);InterPro=Inorganic pyrophosphatase (IPR008162);NIAS_FLcDNA=J065194D01;Oryzabase=22992;TENOR=Os01t0974800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	43076318	43076466	.	-	.	Parent=Os01t0974800-01
Chr01	irgsp1_rep	five_prime_UTR	43075049	43076203	.	-	.	Parent=Os01t0974800-01
Chr01	irgsp1_rep	five_prime_UTR	43074774	43074832	.	-	.	Parent=Os01t0974800-01
Chr01	irgsp1_rep	CDS	43074635	43074773	.	-	0	Parent=Os01t0974800-01
Chr01	irgsp1_rep	CDS	43074429	43074457	.	-	2	Parent=Os01t0974800-01
Chr01	irgsp1_rep	CDS	43074142	43074207	.	-	0	Parent=Os01t0974800-01
Chr01	irgsp1_rep	CDS	43073946	43074053	.	-	0	Parent=Os01t0974800-01
Chr01	irgsp1_rep	CDS	43073675	43073740	.	-	0	Parent=Os01t0974800-01
Chr01	irgsp1_rep	CDS	43073479	43073599	.	-	0	Parent=Os01t0974800-01
Chr01	irgsp1_rep	CDS	43073075	43073156	.	-	2	Parent=Os01t0974800-01
Chr01	irgsp1_rep	CDS	43072958	43073000	.	-	1	Parent=Os01t0974800-01
Chr01	irgsp1_rep	three_prime_UTR	43072763	43072957	.	-	.	Parent=Os01t0974800-01
Chr01	irgsp1_rep	mRNA	43077383	43077649	.	+	.	ID=Os01t0974900-00;Name=Os01t0974900-00;Locus_id=Os01g0974900;Note=Similar to 26S proteasome non-ATPase regulatory subunit 6.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001148687.1 (RefSeq);TENOR=Os01t0974900-00;KEGG=Os01t0974900-00
Chr01	irgsp1_rep	CDS	43077383	43077649	.	+	0	Parent=Os01t0974900-00
Chr01	irgsp1_rep	mRNA	43078873	43080400	.	-	.	ID=Os01t0975000-01;Name=Os01t0975000-01;Locus_id=Os01g0975000;Oryzabase Gene Symbol Synonym(s)=OsDSR3;Oryzabase Gene Name Synonym(s)=DUF966-stress repressive gene 3;Note=Protein of unknown function DUF966 family protein.;Transcript_evidence=AK103552 (DDBJ%2C Best hit);ORF_evidence=Q5JL17 (UniProt);InterPro=Protein of unknown function DUF966 (IPR010369),Uncharacterised conserved protein UCP031043 (IPR021182);NIAS_FLcDNA=J033132F15;Oryzabase=15440;Expression=AK103552;TENOR=Os01t0975000-01;KEGG=Os01t0975000-01
Chr01	irgsp1_rep	five_prime_UTR	43080223	43080400	.	-	.	Parent=Os01t0975000-01
Chr01	irgsp1_rep	CDS	43079315	43080222	.	-	0	Parent=Os01t0975000-01
Chr01	irgsp1_rep	CDS	43079090	43079210	.	-	1	Parent=Os01t0975000-01
Chr01	irgsp1_rep	three_prime_UTR	43078873	43079089	.	-	.	Parent=Os01t0975000-01
Chr01	irgsp1_rep	mRNA	43078802	43080345	.	-	.	ID=Os01t0975000-02;Name=Os01t0975000-02;Locus_id=Os01g0975000;Oryzabase Gene Symbol Synonym(s)=OsDSR3;Oryzabase Gene Name Synonym(s)=DUF966-stress repressive gene 3;Note=Protein of unknown function DUF966 family protein.;Transcript_evidence=AK119662 (DDBJ%2C Best hit);ORF_evidence=Q5JL17 (UniProt);InterPro=Protein of unknown function DUF966 (IPR010369),Uncharacterised conserved protein UCP031043 (IPR021182);NIAS_FLcDNA=002-141-B03;Oryzabase=15440;Expression=AK119662;TENOR=Os01t0975000-02;KEGG=Os01t0975000-02
Chr01	irgsp1_rep	five_prime_UTR	43080223	43080345	.	-	.	Parent=Os01t0975000-02
Chr01	irgsp1_rep	CDS	43079315	43080222	.	-	0	Parent=Os01t0975000-02
Chr01	irgsp1_rep	CDS	43079090	43079210	.	-	1	Parent=Os01t0975000-02
Chr01	irgsp1_rep	three_prime_UTR	43078802	43079089	.	-	.	Parent=Os01t0975000-02
Chr01	irgsp1_rep	mRNA	43096401	43097949	.	+	.	ID=Os01t0975300-01;Name=Os01t0975300-01;Locus_id=Os01g0975300;RAP-DB Gene Symbol Synonym(s)=OsMYB48%2C OsMYB48-1%2C OsMYB48-2;RAP-DB Gene Name Synonym(s)=MYB transcription factor 48;Oryzabase Gene Symbol Synonym(s)=OsMYB48%2C MYB48%2C OsMYB48-1%2C OsMYB48-2%2C OsMYB59%2C MYB59;Oryzabase Gene Name Synonym(s)=MYB transcription factor 48;Note=MYB-related transcription factor%2C Drought and salinity tolerance;Transcript_evidence=AK066180;ORF_evidence=Q5JL15;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeodomain-like (IPR009057),SANT/Myb domain (IPR001005),Myb-like domain (IPR017877),Myb domain (IPR017930);NIAS_FLcDNA=J013058H19;Manual Curation=December 16%2C 2015;Literature_PMID=24667379;Oryzabase=15529;Expression=AK066180;TENOR=Os01t0975300-01;KEGG=Os01t0975300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	43096401	43096885	.	+	.	Parent=Os01t0975300-01
Chr01	irgsp1_rep	CDS	43096886	43097518	.	+	0	Parent=Os01t0975300-01
Chr01	irgsp1_rep	three_prime_UTR	43097519	43097949	.	+	.	Parent=Os01t0975300-01
Chr01	irgsp1_rep	mRNA	43096858	43097940	.	+	.	ID=Os01t0975300-02;Name=Os01t0975300-02;Locus_id=Os01g0975300;Oryzabase Gene Symbol Synonym(s)=OsMYB48%2C MYB48%2C OsMYB48-1%2C OsMYB48-2%2C OsMYB59%2C MYB59;Oryzabase Gene Name Synonym(s)=MYB transcription factor 48;Note=Similar to Myb factor protein.;Transcript_evidence=AK061823 (DDBJ%2C Best hit);ORF_evidence=Q6TGS1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),MYB-like (IPR017877),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=001-040-C01;Oryzabase=15529;Expression=AK061823;TENOR=Os01t0975300-02;KEGG=Os01t0975300-02
Chr01	irgsp1_rep	five_prime_UTR	43096858	43096885	.	+	.	Parent=Os01t0975300-02
Chr01	irgsp1_rep	CDS	43096886	43097518	.	+	0	Parent=Os01t0975300-02
Chr01	irgsp1_rep	three_prime_UTR	43097519	43097940	.	+	.	Parent=Os01t0975300-02
Chr01	irgsp1_rep	mRNA	43112781	43113407	.	+	.	ID=Os01t0975800-01;Name=Os01t0975800-01;Locus_id=Os01g0975800;RAP-DB Gene Symbol Synonym(s)=MADS79;RAP-DB Gene Name Synonym(s)=MADS box gene 79;CGSNL Gene Symbol=MADS79;CGSNL Gene Name=MADS BOX GENE 79;Oryzabase Gene Symbol Synonym(s)=OsMADS79;Oryzabase Gene Name Synonym(s)=MADS box gene79%2C MADS box gene 79%2C MADS-box transcription factor 79;Note=MADS-box transcription factor%2C Regulation of early seed development;Transcript_evidence=EU969208 (maize);ORF_evidence=Q94CT0;GO=Biological Process: positive regulation of transcription by RNA polymerase II (GO:0045944),Molecular Function: RNA polymerase II regulatory region sequence-specific DNA binding (GO:0000977),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box superfamily (IPR036879),Transcription factor%2C MADS-box (IPR002100),MADS MEF2-like (IPR033896);Manual Curation=December 10%2C 2019;Literature_PMID=31818903;Oryzabase=12315;TENOR=Os01t0975800-00;KEGG=Os01t0975800-00;Subcellular location=nucleus (GO:0005634), cytosol (GO:0005829), chloroplast (GO:0009507)
Chr01	irgsp1_rep	CDS	43112781	43113407	.	+	0	Parent=Os01t0975800-01
Chr01	irgsp1_rep	mRNA	43115993	43117221	.	-	.	ID=Os01t0975900-01;Name=Os01t0975900-01;Locus_id=Os01g0975900;CGSNL Gene Symbol=TIP1%3B2;CGSNL Gene Name=TONOPLAST INTRINSIC PROTEIN 1%3B2;Oryzabase Gene Symbol Synonym(s)=OsTIP1%3B2%2C TIP1-2%2C TIP1.2%2C TIP1;Oryzabase Gene Name Synonym(s)=Probable aquaporin TIP1.2%2C Probable aquaporin TIP1-2%2C Tonoplast intrinsic protein 1-2;Note=Similar to Tonoplast membrane integral protein ZmTIP1-2.;Transcript_evidence=AK111747 (DDBJ%2C Best hit);ORF_evidence=B7F462 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Major intrinsic protein%2C conserved site (IPR022357),Aquaporin-like (IPR023271);NIAS_FLcDNA=J023050B20;Oryzabase=8381;Expression=AK111747;TENOR=Os01t0975900-01;KEGG=Os01t0975900-01
Chr01	irgsp1_rep	five_prime_UTR	43117150	43117221	.	-	.	Parent=Os01t0975900-01
Chr01	irgsp1_rep	CDS	43117017	43117149	.	-	0	Parent=Os01t0975900-01
Chr01	irgsp1_rep	CDS	43116310	43116935	.	-	2	Parent=Os01t0975900-01
Chr01	irgsp1_rep	three_prime_UTR	43115993	43116309	.	-	.	Parent=Os01t0975900-01
Chr01	irgsp1_rep	mRNA	43115747	43117172	.	-	.	ID=Os01t0975900-02;Name=Os01t0975900-02;Locus_id=Os01g0975900;CGSNL Gene Symbol=TIP1%3B2;CGSNL Gene Name=TONOPLAST INTRINSIC PROTEIN 1%3B2;Oryzabase Gene Symbol Synonym(s)=OsTIP1%3B2%2C TIP1-2%2C TIP1.2%2C TIP1;Oryzabase Gene Name Synonym(s)=Probable aquaporin TIP1.2%2C Probable aquaporin TIP1-2%2C Tonoplast intrinsic protein 1-2;Note=Similar to Tonoplast membrane integral protein ZmTIP1-2.;Transcript_evidence=AK111768 (DDBJ%2C Best hit);ORF_evidence=A7J2I5 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Major intrinsic protein%2C conserved site (IPR022357),Aquaporin-like (IPR023271);NIAS_FLcDNA=J023066H10;Oryzabase=8381;Expression=AK111768;TENOR=Os01t0975900-02;KEGG=Os01t0975900-02
Chr01	irgsp1_rep	five_prime_UTR	43117150	43117172	.	-	.	Parent=Os01t0975900-02
Chr01	irgsp1_rep	CDS	43117017	43117149	.	-	0	Parent=Os01t0975900-02
Chr01	irgsp1_rep	CDS	43116310	43116935	.	-	2	Parent=Os01t0975900-02
Chr01	irgsp1_rep	three_prime_UTR	43115747	43116309	.	-	.	Parent=Os01t0975900-02
Chr01	irgsp1_rep	mRNA	43120167	43125525	.	-	.	ID=Os01t0976000-01;Name=Os01t0976000-01;Locus_id=Os01g0976000;Note=Vacuolar fusion protein MON1 domain containing protein.;Transcript_evidence=AK067175 (DDBJ%2C Best hit);ORF_evidence=NP_001149118.1 (RefSeq);InterPro=Vacuolar fusion protein MON1 (IPR004353);NIAS_FLcDNA=J013098G13;Expression=AK067175;TENOR=Os01t0976000-01;KEGG=Os01t0976000-01
Chr01	irgsp1_rep	five_prime_UTR	43125461	43125525	.	-	.	Parent=Os01t0976000-01
Chr01	irgsp1_rep	CDS	43125086	43125460	.	-	0	Parent=Os01t0976000-01
Chr01	irgsp1_rep	CDS	43124883	43124962	.	-	0	Parent=Os01t0976000-01
Chr01	irgsp1_rep	CDS	43124674	43124745	.	-	1	Parent=Os01t0976000-01
Chr01	irgsp1_rep	CDS	43124495	43124534	.	-	1	Parent=Os01t0976000-01
Chr01	irgsp1_rep	CDS	43124266	43124367	.	-	0	Parent=Os01t0976000-01
Chr01	irgsp1_rep	CDS	43124022	43124143	.	-	0	Parent=Os01t0976000-01
Chr01	irgsp1_rep	CDS	43123811	43123943	.	-	1	Parent=Os01t0976000-01
Chr01	irgsp1_rep	CDS	43123220	43123311	.	-	0	Parent=Os01t0976000-01
Chr01	irgsp1_rep	CDS	43123063	43123144	.	-	1	Parent=Os01t0976000-01
Chr01	irgsp1_rep	CDS	43122284	43122348	.	-	0	Parent=Os01t0976000-01
Chr01	irgsp1_rep	CDS	43121882	43122169	.	-	1	Parent=Os01t0976000-01
Chr01	irgsp1_rep	CDS	43121693	43121784	.	-	1	Parent=Os01t0976000-01
Chr01	irgsp1_rep	CDS	43120741	43120805	.	-	2	Parent=Os01t0976000-01
Chr01	irgsp1_rep	CDS	43120491	43120586	.	-	0	Parent=Os01t0976000-01
Chr01	irgsp1_rep	three_prime_UTR	43120480	43120490	.	-	.	Parent=Os01t0976000-01
Chr01	irgsp1_rep	three_prime_UTR	43120167	43120396	.	-	.	Parent=Os01t0976000-01
Chr01	irgsp1_rep	mRNA	43131080	43134502	.	-	.	ID=Os01t0976100-01;Name=Os01t0976100-01;Locus_id=Os01g0976100;CGSNL Gene Symbol=MDR10;CGSNL Gene Name=MULTIDRUG RESISTANCE 10;Oryzabase Gene Symbol Synonym(s)=OsABCB8%2C ABCB8%2C OsPGP8%2C OsMDR10%2C OsISC29;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCB subgroup member 8%2C P-Glycoprotein 8%2C multidrug resistance 10%2C Iron-sulfur cluster protein 29;Note=ABC transporter-like domain containing protein.;Transcript_evidence=AK069646 (DDBJ%2C Best hit);ORF_evidence=Q8GU74 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C integral membrane type 1 (IPR017940);NIAS_FLcDNA=J023027M23;Oryzabase=11927;TENOR=Os01t0976100-01
Chr01	irgsp1_rep	five_prime_UTR	43134235	43134502	.	-	.	Parent=Os01t0976100-01
Chr01	irgsp1_rep	CDS	43133857	43134234	.	-	0	Parent=Os01t0976100-01
Chr01	irgsp1_rep	CDS	43133031	43133085	.	-	0	Parent=Os01t0976100-01
Chr01	irgsp1_rep	CDS	43132774	43132949	.	-	2	Parent=Os01t0976100-01
Chr01	irgsp1_rep	CDS	43132478	43132678	.	-	0	Parent=Os01t0976100-01
Chr01	irgsp1_rep	CDS	43131899	43132158	.	-	0	Parent=Os01t0976100-01
Chr01	irgsp1_rep	CDS	43131508	43131818	.	-	1	Parent=Os01t0976100-01
Chr01	irgsp1_rep	CDS	43131207	43131427	.	-	2	Parent=Os01t0976100-01
Chr01	irgsp1_rep	CDS	43131080	43131105	.	-	0	Parent=Os01t0976100-01
Chr01	irgsp1_rep	mRNA	43136240	43137717	.	-	.	ID=Os01t0976200-01;Name=Os01t0976200-01;Locus_id=Os01g0976200;Note=11-S plant seed storage protein family protein.;Transcript_evidence=AK061022 (DDBJ%2C Best hit);ORF_evidence=B6TDD3 (UniProt);GO=Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=11-S seed storage protein%2C plant (IPR006044),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710);NIAS_FLcDNA=006-204-D01;Expression=AK061022;TENOR=Os01t0976200-01;KEGG=Os01t0976200-01
Chr01	irgsp1_rep	five_prime_UTR	43137656	43137717	.	-	.	Parent=Os01t0976200-01
Chr01	irgsp1_rep	CDS	43136522	43137655	.	-	0	Parent=Os01t0976200-01
Chr01	irgsp1_rep	three_prime_UTR	43136240	43136521	.	-	.	Parent=Os01t0976200-01
Chr01	irgsp1_rep	mRNA	43141847	43142667	.	+	.	ID=Os01t0976300-01;Name=Os01t0976300-01;Locus_id=Os01g0976300;CGSNL Gene Symbol=HMP10;CGSNL Gene Name=HEAVY METAL-ASSOCIATED PROTEIN 10;Oryzabase Gene Symbol Synonym(s)=OsHMP10;Oryzabase Gene Name Synonym(s)=Heavy metal-associated protein 10;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK111354 (DDBJ%2C Best hit);ORF_evidence=A2WZN9 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);NIAS_FLcDNA=002-181-G11;Oryzabase=23535;Expression=AK111354;TENOR=Os01t0976300-01;KEGG=Os01t0976300-01
Chr01	irgsp1_rep	five_prime_UTR	43141847	43141937	.	+	.	Parent=Os01t0976300-01
Chr01	irgsp1_rep	CDS	43141938	43142552	.	+	0	Parent=Os01t0976300-01
Chr01	irgsp1_rep	three_prime_UTR	43142553	43142667	.	+	.	Parent=Os01t0976300-01
Chr01	irgsp1_rep	mRNA	43143717	43153489	.	+	.	ID=Os01t0976450-00;Name=Os01t0976450-00;Locus_id=Os01g0976450;Note=SET domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5JL06 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=SET domain (IPR001214);TENOR=Os01t0976450-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	43143717	43143776	.	+	0	Parent=Os01t0976450-00
Chr01	irgsp1_rep	CDS	43143865	43143980	.	+	0	Parent=Os01t0976450-00
Chr01	irgsp1_rep	CDS	43144079	43144142	.	+	1	Parent=Os01t0976450-00
Chr01	irgsp1_rep	CDS	43144244	43144354	.	+	0	Parent=Os01t0976450-00
Chr01	irgsp1_rep	CDS	43144445	43144504	.	+	0	Parent=Os01t0976450-00
Chr01	irgsp1_rep	CDS	43144638	43144745	.	+	0	Parent=Os01t0976450-00
Chr01	irgsp1_rep	CDS	43144844	43144913	.	+	0	Parent=Os01t0976450-00
Chr01	irgsp1_rep	CDS	43145661	43145728	.	+	2	Parent=Os01t0976450-00
Chr01	irgsp1_rep	CDS	43145867	43145902	.	+	0	Parent=Os01t0976450-00
Chr01	irgsp1_rep	CDS	43146097	43146180	.	+	0	Parent=Os01t0976450-00
Chr01	irgsp1_rep	CDS	43152419	43152640	.	+	0	Parent=Os01t0976450-00
Chr01	irgsp1_rep	CDS	43153337	43153489	.	+	0	Parent=Os01t0976450-00
Chr01	irgsp1_rep	mRNA	43147029	43147576	.	-	.	ID=Os01t0976475-00;Name=Os01t0976475-00;Locus_id=Os01g0976475;Note=Conserved hypothetical protein.;Transcript_evidence=EU942641 (DDBJ);ORF_evidence=B8AN36 (UniProt);TENOR=Os01t0976475-00
Chr01	irgsp1_rep	CDS	43147094	43147576	.	-	0	Parent=Os01t0976475-00
Chr01	irgsp1_rep	three_prime_UTR	43147029	43147093	.	-	.	Parent=Os01t0976475-00
Chr01	irgsp1_rep	mRNA	43154137	43158085	.	+	.	ID=Os01t0976500-01;Name=Os01t0976500-01;Locus_id=Os01g0976500;Note=KIP1-like domain containing protein.;Transcript_evidence=AK100555 (DDBJ%2C Best hit);ORF_evidence=A3A225 (UniProt);InterPro=KIP1-like (IPR011684);NIAS_FLcDNA=J023103M06;TENOR=Os01t0976500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	43154137	43154293	.	+	0	Parent=Os01t0976500-01
Chr01	irgsp1_rep	CDS	43155025	43157723	.	+	2	Parent=Os01t0976500-01
Chr01	irgsp1_rep	three_prime_UTR	43157724	43158085	.	+	.	Parent=Os01t0976500-01
Chr01	irgsp1_rep	mRNA	43159520	43162849	.	-	.	ID=Os01t0976600-01;Name=Os01t0976600-01;Locus_id=Os01g0976600;Note=Similar to Methlytransferase%2C UbiE/COQ5 family.;Transcript_evidence=AK072971 (DDBJ%2C Best hit);ORF_evidence=Q5JNC0 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=UbiE/COQ5 methyltransferase (IPR004033),UbiE/COQ5 methyltransferase%2C conserved site (IPR023576);NIAS_FLcDNA=J023148G18;Expression=AK072971;TENOR=Os01t0976600-01;KEGG=Os01t0976600-01 (EC:2.1.1.-)
Chr01	irgsp1_rep	five_prime_UTR	43162663	43162849	.	-	.	Parent=Os01t0976600-01
Chr01	irgsp1_rep	CDS	43162551	43162662	.	-	0	Parent=Os01t0976600-01
Chr01	irgsp1_rep	CDS	43162337	43162463	.	-	2	Parent=Os01t0976600-01
Chr01	irgsp1_rep	CDS	43162199	43162260	.	-	1	Parent=Os01t0976600-01
Chr01	irgsp1_rep	CDS	43161572	43161727	.	-	2	Parent=Os01t0976600-01
Chr01	irgsp1_rep	CDS	43161332	43161476	.	-	2	Parent=Os01t0976600-01
Chr01	irgsp1_rep	CDS	43161075	43161146	.	-	1	Parent=Os01t0976600-01
Chr01	irgsp1_rep	CDS	43160198	43160306	.	-	1	Parent=Os01t0976600-01
Chr01	irgsp1_rep	CDS	43159803	43159904	.	-	0	Parent=Os01t0976600-01
Chr01	irgsp1_rep	three_prime_UTR	43159520	43159802	.	-	.	Parent=Os01t0976600-01
Chr01	irgsp1_rep	mRNA	43163463	43166882	.	-	.	ID=Os01t0976700-01;Name=Os01t0976700-01;Locus_id=Os01g0976700;Oryzabase Gene Symbol Synonym(s)=OsPP17;Oryzabase Gene Name Synonym(s)=Protein phosphatase 17;Note=Similar to Protein phosphatase 2C-like protein.;Transcript_evidence=AK100571 (DDBJ%2C Best hit);ORF_evidence=NP_001030682.1 (RefSeq);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J023105D23;Oryzabase=18630;Expression=AK100571;TENOR=Os01t0976700-01;KEGG=Os01t0976700-01 (EC:3.1.3.43)
Chr01	irgsp1_rep	five_prime_UTR	43166313	43166882	.	-	.	Parent=Os01t0976700-01
Chr01	irgsp1_rep	CDS	43166012	43166312	.	-	0	Parent=Os01t0976700-01
Chr01	irgsp1_rep	CDS	43165576	43165937	.	-	2	Parent=Os01t0976700-01
Chr01	irgsp1_rep	CDS	43165147	43165383	.	-	0	Parent=Os01t0976700-01
Chr01	irgsp1_rep	CDS	43164314	43164544	.	-	0	Parent=Os01t0976700-01
Chr01	irgsp1_rep	three_prime_UTR	43164127	43164313	.	-	.	Parent=Os01t0976700-01
Chr01	irgsp1_rep	three_prime_UTR	43163463	43164026	.	-	.	Parent=Os01t0976700-01
Chr01	irgsp1_rep	mRNA	43165294	43166743	.	+	.	ID=Os01t0976750-01;Name=Os01t0976750-01;Locus_id=Os01g0976750;Note=Hypothetical conserved gene.;Transcript_evidence=AK068121 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013135K13;Expression=AK068121;TENOR=Os01t0976750-01;KEGG=Os01t0976750-01
Chr01	irgsp1_rep	five_prime_UTR	43165294	43165383	.	+	.	Parent=Os01t0976750-01
Chr01	irgsp1_rep	five_prime_UTR	43165576	43165937	.	+	.	Parent=Os01t0976750-01
Chr01	irgsp1_rep	five_prime_UTR	43166012	43166030	.	+	.	Parent=Os01t0976750-01
Chr01	irgsp1_rep	CDS	43166031	43166489	.	+	0	Parent=Os01t0976750-01
Chr01	irgsp1_rep	three_prime_UTR	43166490	43166743	.	+	.	Parent=Os01t0976750-01
Chr01	irgsp1_rep	mRNA	43172242	43173072	.	-	.	ID=Os01t0976800-01;Name=Os01t0976800-01;Locus_id=Os01g0976800;RAP-DB Gene Symbol Synonym(s)=GATA10;RAP-DB Gene Name Synonym(s)=GATA transcription factor 10;CGSNL Gene Symbol=GATA10;CGSNL Gene Name=GATA TRANSCRIPTION FACTOR 10;Oryzabase Gene Symbol Synonym(s)=OsGATA10;Oryzabase Gene Name Synonym(s)=GATA transcription factor 10%2C GATA factor 10;Note=GATA transcription factor%2C Regulation of fertility conversion of two-line hybrid tms5 mutant rice;Transcript_evidence=AK241643;ORF_evidence=Q5JNB8;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Zinc finger%2C NHR/GATA-type (IPR013088),Zinc finger%2C GATA-type (IPR000679);NIAS_FLcDNA=J065189M03;Manual Curation=February 17%2C 2020;Literature_PMID=31486580;Oryzabase=20495;TENOR=Os01t0976800-01;KEGG=Os01t0976800-01;Subcellular location=nucleus (GO:0005634)
Chr01	irgsp1_rep	five_prime_UTR	43173024	43173072	.	-	.	Parent=Os01t0976800-01
Chr01	irgsp1_rep	CDS	43172895	43173023	.	-	0	Parent=Os01t0976800-01
Chr01	irgsp1_rep	CDS	43172444	43172743	.	-	0	Parent=Os01t0976800-01
Chr01	irgsp1_rep	three_prime_UTR	43172242	43172443	.	-	.	Parent=Os01t0976800-01
Chr01	irgsp1_rep	mRNA	43175447	43178814	.	-	.	ID=Os01t0976900-00;Name=Os01t0976900-00;Locus_id=Os01g0976900;Note=Similar to kinase.;Transcript_evidence=tplb0007p05 (Wheat FLcDNA);ORF_evidence=NP_181242.3 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os01t0976900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	43177896	43178814	.	-	0	Parent=Os01t0976900-00
Chr01	irgsp1_rep	CDS	43175447	43176510	.	-	2	Parent=Os01t0976900-00
Chr01	irgsp1_rep	mRNA	43177784	43178961	.	+	.	ID=Os01t0976950-00;Name=Os01t0976950-00;Locus_id=Os01g0976950;Note=Hypothetical gene.;Transcript_evidence=EU948927 (DDBJ);ORF_evidence=longestORF;TENOR=Os01t0976950-00;KEGG=Os01t0976950-00
Chr01	irgsp1_rep	five_prime_UTR	43177784	43177784	.	+	.	Parent=Os01t0976950-00
Chr01	irgsp1_rep	CDS	43177785	43178818	.	+	0	Parent=Os01t0976950-00
Chr01	irgsp1_rep	CDS	43178901	43178961	.	+	1	Parent=Os01t0976950-00
Chr01	irgsp1_rep	mRNA	43185350	43186282	.	+	.	ID=Os01t0977100-00;Name=Os01t0977100-00;Locus_id=Os01g0977100;CGSNL Gene Symbol=TET1;CGSNL Gene Name=TETRASPANIN 1;Oryzabase Gene Symbol Synonym(s)=OsTET1;Oryzabase Gene Name Synonym(s)=tetraspanin 1;Note=Similar to predicted protein.;Transcript_evidence=BT034628 (DDBJ);ORF_evidence=NP_001172763.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Tetraspanin (IPR018499);Oryzabase=20306;TENOR=Os01t0977100-00;KEGG=Os01t0977100-00
Chr01	irgsp1_rep	CDS	43185350	43186255	.	+	0	Parent=Os01t0977100-00
Chr01	irgsp1_rep	three_prime_UTR	43186256	43186282	.	+	.	Parent=Os01t0977100-00
Chr01	irgsp1_rep	mRNA	43189206	43193303	.	+	.	ID=Os01t0977200-00;Name=Os01t0977200-00;Locus_id=Os01g0977200;Oryzabase Gene Symbol Synonym(s)=OsDjC15%2C OsP58B;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C15;Note=Similar to dnaJ subfamily C member 7.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001148532.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide TPR2 (IPR013105),Heat shock protein DnaJ%2C conserved site (IPR018253),Tetratricopeptide repeat (IPR019734);Oryzabase=12172;TENOR=Os01t0977200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	CDS	43189206	43189281	.	+	0	Parent=Os01t0977200-00
Chr01	irgsp1_rep	CDS	43189695	43189860	.	+	2	Parent=Os01t0977200-00
Chr01	irgsp1_rep	CDS	43190136	43190337	.	+	1	Parent=Os01t0977200-00
Chr01	irgsp1_rep	CDS	43190431	43190591	.	+	0	Parent=Os01t0977200-00
Chr01	irgsp1_rep	CDS	43190721	43190814	.	+	1	Parent=Os01t0977200-00
Chr01	irgsp1_rep	CDS	43190892	43191104	.	+	0	Parent=Os01t0977200-00
Chr01	irgsp1_rep	CDS	43192559	43192777	.	+	0	Parent=Os01t0977200-00
Chr01	irgsp1_rep	CDS	43193100	43193303	.	+	0	Parent=Os01t0977200-00
Chr01	irgsp1_rep	mRNA	43189156	43193493	.	-	.	ID=Os01t0977250-01;Name=Os01t0977250-01;Locus_id=Os01g0977250;Note=Hypothetical gene.;Transcript_evidence=AK242849 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090072M15;TENOR=Os01t0977250-01;KEGG=Os01t0977250-01
Chr01	irgsp1_rep	five_prime_UTR	43193226	43193493	.	-	.	Parent=Os01t0977250-01
Chr01	irgsp1_rep	CDS	43193100	43193225	.	-	0	Parent=Os01t0977250-01
Chr01	irgsp1_rep	CDS	43192658	43192777	.	-	0	Parent=Os01t0977250-01
Chr01	irgsp1_rep	three_prime_UTR	43192556	43192657	.	-	.	Parent=Os01t0977250-01
Chr01	irgsp1_rep	three_prime_UTR	43191590	43191667	.	-	.	Parent=Os01t0977250-01
Chr01	irgsp1_rep	three_prime_UTR	43190892	43191104	.	-	.	Parent=Os01t0977250-01
Chr01	irgsp1_rep	three_prime_UTR	43190721	43190814	.	-	.	Parent=Os01t0977250-01
Chr01	irgsp1_rep	three_prime_UTR	43190431	43190591	.	-	.	Parent=Os01t0977250-01
Chr01	irgsp1_rep	three_prime_UTR	43190136	43190337	.	-	.	Parent=Os01t0977250-01
Chr01	irgsp1_rep	three_prime_UTR	43189695	43189860	.	-	.	Parent=Os01t0977250-01
Chr01	irgsp1_rep	three_prime_UTR	43189156	43189281	.	-	.	Parent=Os01t0977250-01
Chr01	irgsp1_rep	mRNA	43194032	43194869	.	-	.	ID=Os01t0977300-01;Name=Os01t0977300-01;Locus_id=Os01g0977300;Oryzabase Gene Symbol Synonym(s)=R2R3-MYB%2C OsEnS-23;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 23;Note=Similar to MYB-related protein.;Transcript_evidence=AK110631 (DDBJ%2C Best hit);ORF_evidence=A5JYF3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=002-169-B11;Oryzabase=16301;Expression=AK110631;TENOR=Os01t0977300-01;KEGG=Os01t0977300-01
Chr01	irgsp1_rep	five_prime_UTR	43194862	43194869	.	-	.	Parent=Os01t0977300-01
Chr01	irgsp1_rep	CDS	43194109	43194861	.	-	0	Parent=Os01t0977300-01
Chr01	irgsp1_rep	three_prime_UTR	43194032	43194108	.	-	.	Parent=Os01t0977300-01
Chr01	irgsp1_rep	mRNA	43196275	43198525	.	+	.	ID=Os01t0977400-01;Name=Os01t0977400-01;Locus_id=Os01g0977400;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK101308 (DDBJ%2C Best hit);ORF_evidence=A3A233 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J033033M22;TENOR=Os01t0977400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	43196275	43196275	.	+	.	Parent=Os01t0977400-01
Chr01	irgsp1_rep	CDS	43196276	43198525	.	+	0	Parent=Os01t0977400-01
Chr01	irgsp1_rep	mRNA	43205700	43215251	.	-	.	ID=Os01t0977600-01;Name=Os01t0977600-01;Locus_id=Os01g0977600;Note=Hypothetical conserved gene.;Transcript_evidence=AK099871 (DDBJ%2C Best hit);ORF_evidence=B9EX16 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013111F09;Expression=AK099871;TENOR=Os01t0977600-01;KEGG=Os01t0977600-01
Chr01	irgsp1_rep	five_prime_UTR	43215155	43215251	.	-	.	Parent=Os01t0977600-01
Chr01	irgsp1_rep	CDS	43214981	43215154	.	-	0	Parent=Os01t0977600-01
Chr01	irgsp1_rep	CDS	43214629	43214691	.	-	0	Parent=Os01t0977600-01
Chr01	irgsp1_rep	CDS	43213871	43213948	.	-	0	Parent=Os01t0977600-01
Chr01	irgsp1_rep	CDS	43213018	43213109	.	-	0	Parent=Os01t0977600-01
Chr01	irgsp1_rep	CDS	43212734	43212836	.	-	1	Parent=Os01t0977600-01
Chr01	irgsp1_rep	CDS	43211686	43211838	.	-	0	Parent=Os01t0977600-01
Chr01	irgsp1_rep	CDS	43209918	43210196	.	-	0	Parent=Os01t0977600-01
Chr01	irgsp1_rep	CDS	43209685	43209777	.	-	0	Parent=Os01t0977600-01
Chr01	irgsp1_rep	three_prime_UTR	43209538	43209684	.	-	.	Parent=Os01t0977600-01
Chr01	irgsp1_rep	three_prime_UTR	43207652	43209463	.	-	.	Parent=Os01t0977600-01
Chr01	irgsp1_rep	three_prime_UTR	43206385	43207183	.	-	.	Parent=Os01t0977600-01
Chr01	irgsp1_rep	three_prime_UTR	43205700	43206145	.	-	.	Parent=Os01t0977600-01
Chr01	irgsp1_rep	mRNA	43202561	43215244	.	-	.	ID=Os01t0977600-02;Name=Os01t0977600-02;Locus_id=Os01g0977600;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=AK122066 (DDBJ%2C Best hit);ORF_evidence=B9EX16 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Armadillo-like helical (IPR011989),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033116G14;Expression=AK122066;TENOR=Os01t0977600-02;KEGG=Os01t0977600-02
Chr01	irgsp1_rep	five_prime_UTR	43215155	43215244	.	-	.	Parent=Os01t0977600-02
Chr01	irgsp1_rep	CDS	43214981	43215154	.	-	0	Parent=Os01t0977600-02
Chr01	irgsp1_rep	CDS	43214629	43214691	.	-	0	Parent=Os01t0977600-02
Chr01	irgsp1_rep	CDS	43213871	43213948	.	-	0	Parent=Os01t0977600-02
Chr01	irgsp1_rep	CDS	43213018	43213109	.	-	0	Parent=Os01t0977600-02
Chr01	irgsp1_rep	CDS	43212734	43212836	.	-	1	Parent=Os01t0977600-02
Chr01	irgsp1_rep	CDS	43211686	43211838	.	-	0	Parent=Os01t0977600-02
Chr01	irgsp1_rep	CDS	43209538	43210196	.	-	0	Parent=Os01t0977600-02
Chr01	irgsp1_rep	CDS	43208974	43209463	.	-	1	Parent=Os01t0977600-02
Chr01	irgsp1_rep	CDS	43207652	43208136	.	-	0	Parent=Os01t0977600-02
Chr01	irgsp1_rep	CDS	43206385	43207183	.	-	1	Parent=Os01t0977600-02
Chr01	irgsp1_rep	CDS	43205455	43206145	.	-	0	Parent=Os01t0977600-02
Chr01	irgsp1_rep	CDS	43204306	43205369	.	-	2	Parent=Os01t0977600-02
Chr01	irgsp1_rep	CDS	43203776	43204231	.	-	0	Parent=Os01t0977600-02
Chr01	irgsp1_rep	CDS	43203050	43203280	.	-	0	Parent=Os01t0977600-02
Chr01	irgsp1_rep	CDS	43202737	43202964	.	-	0	Parent=Os01t0977600-02
Chr01	irgsp1_rep	three_prime_UTR	43202561	43202736	.	-	.	Parent=Os01t0977600-02
Chr01	irgsp1_rep	mRNA	43202610	43205251	.	-	.	ID=Os01t0977600-03;Name=Os01t0977600-03;Locus_id=Os01g0977600;Note=Hypothetical conserved gene.;Transcript_evidence=AK060263 (DDBJ%2C Best hit);ORF_evidence=B9EX16 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING-CH-type (IPR011016),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=001-005-B04;Expression=AK060263;TENOR=Os01t0977600-03;KEGG=Os01t0977600-03
Chr01	irgsp1_rep	five_prime_UTR	43205251	43205251	.	-	.	Parent=Os01t0977600-03
Chr01	irgsp1_rep	CDS	43204306	43205250	.	-	0	Parent=Os01t0977600-03
Chr01	irgsp1_rep	CDS	43203776	43204231	.	-	0	Parent=Os01t0977600-03
Chr01	irgsp1_rep	CDS	43203050	43203280	.	-	0	Parent=Os01t0977600-03
Chr01	irgsp1_rep	CDS	43202737	43202964	.	-	0	Parent=Os01t0977600-03
Chr01	irgsp1_rep	three_prime_UTR	43202610	43202736	.	-	.	Parent=Os01t0977600-03
Chr01	irgsp1_rep	mRNA	43220621	43221254	.	-	.	ID=Os01t0977901-00;Name=Os01t0977901-00;Locus_id=Os01g0977901;Note=Similar to MDR-like ABC transporter.;Transcript_evidence=EU960103 (DDBJ);ORF_evidence=Q8GU69 (UniProt);TENOR=Os01t0977901-00
Chr01	irgsp1_rep	CDS	43220872	43221254	.	-	0	Parent=Os01t0977901-00
Chr01	irgsp1_rep	CDS	43220812	43220815	.	-	1	Parent=Os01t0977901-00
Chr01	irgsp1_rep	three_prime_UTR	43220621	43220811	.	-	.	Parent=Os01t0977901-00
Chr01	irgsp1_rep	mRNA	43226191	43230312	.	+	.	ID=Os01t0978000-01;Name=Os01t0978000-01;Locus_id=Os01g0978000;Note=Similar to Uncoupling protein.;Transcript_evidence=AK103874 (DDBJ%2C Best hit);ORF_evidence=Q9AVG2 (UniProt);InterPro=Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J033149M03;Expression=AK103874;TENOR=Os01t0978000-01;KEGG=Os01t0978000-01
Chr01	irgsp1_rep	five_prime_UTR	43226191	43226327	.	+	.	Parent=Os01t0978000-01
Chr01	irgsp1_rep	CDS	43226328	43226387	.	+	0	Parent=Os01t0978000-01
Chr01	irgsp1_rep	CDS	43226614	43226832	.	+	0	Parent=Os01t0978000-01
Chr01	irgsp1_rep	CDS	43226949	43227033	.	+	0	Parent=Os01t0978000-01
Chr01	irgsp1_rep	CDS	43227121	43227161	.	+	2	Parent=Os01t0978000-01
Chr01	irgsp1_rep	three_prime_UTR	43227162	43227355	.	+	.	Parent=Os01t0978000-01
Chr01	irgsp1_rep	three_prime_UTR	43227444	43227542	.	+	.	Parent=Os01t0978000-01
Chr01	irgsp1_rep	three_prime_UTR	43227678	43227730	.	+	.	Parent=Os01t0978000-01
Chr01	irgsp1_rep	three_prime_UTR	43227832	43227906	.	+	.	Parent=Os01t0978000-01
Chr01	irgsp1_rep	three_prime_UTR	43229648	43229734	.	+	.	Parent=Os01t0978000-01
Chr01	irgsp1_rep	three_prime_UTR	43229913	43230312	.	+	.	Parent=Os01t0978000-01
Chr01	irgsp1_rep	mRNA	43226254	43230329	.	+	.	ID=Os01t0978000-02;Name=Os01t0978000-02;Locus_id=Os01g0978000;Note=Similar to Uncoupling protein.;Transcript_evidence=AK102326 (DDBJ%2C Best hit);ORF_evidence=Q9AVG2 (UniProt);InterPro=Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J033090K13;Expression=AK102326;TENOR=Os01t0978000-02;KEGG=Os01t0978000-02
Chr01	irgsp1_rep	five_prime_UTR	43226254	43226327	.	+	.	Parent=Os01t0978000-02
Chr01	irgsp1_rep	CDS	43226328	43226387	.	+	0	Parent=Os01t0978000-02
Chr01	irgsp1_rep	CDS	43226614	43226832	.	+	0	Parent=Os01t0978000-02
Chr01	irgsp1_rep	CDS	43226949	43227033	.	+	0	Parent=Os01t0978000-02
Chr01	irgsp1_rep	CDS	43227121	43227161	.	+	2	Parent=Os01t0978000-02
Chr01	irgsp1_rep	three_prime_UTR	43227162	43227355	.	+	.	Parent=Os01t0978000-02
Chr01	irgsp1_rep	three_prime_UTR	43227444	43227542	.	+	.	Parent=Os01t0978000-02
Chr01	irgsp1_rep	three_prime_UTR	43227678	43227730	.	+	.	Parent=Os01t0978000-02
Chr01	irgsp1_rep	three_prime_UTR	43227832	43227906	.	+	.	Parent=Os01t0978000-02
Chr01	irgsp1_rep	three_prime_UTR	43229648	43229734	.	+	.	Parent=Os01t0978000-02
Chr01	irgsp1_rep	three_prime_UTR	43229913	43230329	.	+	.	Parent=Os01t0978000-02
Chr01	irgsp1_rep	mRNA	43232027	43238506	.	-	.	ID=Os01t0978100-01;Name=Os01t0978100-01;Locus_id=Os01g0978100;Note=Similar to Cysteine synthase%2C mitochondrial precursor (EC 2.5.1.47) (O- acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase C) (CS-C) (OAS-TL C) (AtCS-C).;Transcript_evidence=AK065652 (DDBJ%2C Best hit);ORF_evidence=C5XFP1 (UniProt);GO=Biological Process: cysteine biosynthetic process from serine (GO:0006535),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: cysteine synthase activity (GO:0004124),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (IPR001216),Pyridoxal phosphate-dependent enzyme%2C beta subunit (IPR001926),Cysteine synthase K/M (IPR005856),Cysteine synthase A (IPR005859);NIAS_FLcDNA=J013035B06;TENOR=Os01t0978100-01
Chr01	irgsp1_rep	five_prime_UTR	43237923	43238506	.	-	.	Parent=Os01t0978100-01
Chr01	irgsp1_rep	CDS	43237674	43237922	.	-	0	Parent=Os01t0978100-01
Chr01	irgsp1_rep	CDS	43237162	43237271	.	-	0	Parent=Os01t0978100-01
Chr01	irgsp1_rep	CDS	43237023	43237080	.	-	1	Parent=Os01t0978100-01
Chr01	irgsp1_rep	CDS	43235269	43235532	.	-	0	Parent=Os01t0978100-01
Chr01	irgsp1_rep	CDS	43235054	43235191	.	-	0	Parent=Os01t0978100-01
Chr01	irgsp1_rep	CDS	43234927	43234978	.	-	0	Parent=Os01t0978100-01
Chr01	irgsp1_rep	CDS	43234771	43234850	.	-	2	Parent=Os01t0978100-01
Chr01	irgsp1_rep	CDS	43233318	43233377	.	-	0	Parent=Os01t0978100-01
Chr01	irgsp1_rep	CDS	43232632	43232712	.	-	0	Parent=Os01t0978100-01
Chr01	irgsp1_rep	CDS	43232360	43232452	.	-	0	Parent=Os01t0978100-01
Chr01	irgsp1_rep	three_prime_UTR	43232027	43232359	.	-	.	Parent=Os01t0978100-01
Chr01	irgsp1_rep	mRNA	43232034	43238012	.	-	.	ID=Os01t0978100-02;Name=Os01t0978100-02;Locus_id=Os01g0978100;Note=Similar to Cysteine synthase%2C mitochondrial precursor (EC 2.5.1.47) (O- acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase C) (CS-C) (OAS-TL C) (AtCS-C).;Transcript_evidence=AK065007 (DDBJ%2C Best hit);ORF_evidence=C5XFP1 (UniProt);GO=Biological Process: cysteine biosynthetic process from serine (GO:0006535),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: cysteine synthase activity (GO:0004124),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (IPR001216),Pyridoxal phosphate-dependent enzyme%2C beta subunit (IPR001926),Cysteine synthase K/M (IPR005856),Cysteine synthase A (IPR005859);NIAS_FLcDNA=J013001E19;TENOR=Os01t0978100-02
Chr01	irgsp1_rep	five_prime_UTR	43237923	43238012	.	-	.	Parent=Os01t0978100-02
Chr01	irgsp1_rep	CDS	43237674	43237922	.	-	0	Parent=Os01t0978100-02
Chr01	irgsp1_rep	CDS	43237162	43237271	.	-	0	Parent=Os01t0978100-02
Chr01	irgsp1_rep	CDS	43237023	43237080	.	-	1	Parent=Os01t0978100-02
Chr01	irgsp1_rep	CDS	43235269	43235532	.	-	0	Parent=Os01t0978100-02
Chr01	irgsp1_rep	CDS	43235054	43235191	.	-	0	Parent=Os01t0978100-02
Chr01	irgsp1_rep	CDS	43234927	43234978	.	-	0	Parent=Os01t0978100-02
Chr01	irgsp1_rep	CDS	43234771	43234850	.	-	2	Parent=Os01t0978100-02
Chr01	irgsp1_rep	CDS	43233318	43233377	.	-	0	Parent=Os01t0978100-02
Chr01	irgsp1_rep	CDS	43232632	43232712	.	-	0	Parent=Os01t0978100-02
Chr01	irgsp1_rep	CDS	43232360	43232452	.	-	0	Parent=Os01t0978100-02
Chr01	irgsp1_rep	three_prime_UTR	43232034	43232359	.	-	.	Parent=Os01t0978100-02
Chr01	irgsp1_rep	mRNA	43232036	43237974	.	-	.	ID=Os01t0978100-03;Name=Os01t0978100-03;Locus_id=Os01g0978100;Note=Similar to Cysteine synthase%2C mitochondrial precursor (EC 2.5.1.47) (O- acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase C) (CS-C) (OAS-TL C) (AtCS-C).;Transcript_evidence=AK099217 (DDBJ%2C Best hit),AK104704 (DDBJ%2C Best hit);ORF_evidence=C5XFP1 (UniProt);GO=Biological Process: cysteine biosynthetic process from serine (GO:0006535),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: cysteine synthase activity (GO:0004124),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (IPR001216),Pyridoxal phosphate-dependent enzyme%2C beta subunit (IPR001926),Cysteine synthase K/M (IPR005856),Cysteine synthase A (IPR005859);NIAS_FLcDNA=J013079H24,001-037-D03;TENOR=Os01t0978100-03
Chr01	irgsp1_rep	five_prime_UTR	43237923	43237974	.	-	.	Parent=Os01t0978100-03
Chr01	irgsp1_rep	CDS	43237674	43237922	.	-	0	Parent=Os01t0978100-03
Chr01	irgsp1_rep	CDS	43237162	43237271	.	-	0	Parent=Os01t0978100-03
Chr01	irgsp1_rep	CDS	43237023	43237080	.	-	1	Parent=Os01t0978100-03
Chr01	irgsp1_rep	CDS	43235269	43235532	.	-	0	Parent=Os01t0978100-03
Chr01	irgsp1_rep	CDS	43235054	43235191	.	-	0	Parent=Os01t0978100-03
Chr01	irgsp1_rep	CDS	43234927	43234978	.	-	0	Parent=Os01t0978100-03
Chr01	irgsp1_rep	CDS	43234771	43234850	.	-	2	Parent=Os01t0978100-03
Chr01	irgsp1_rep	CDS	43233318	43233377	.	-	0	Parent=Os01t0978100-03
Chr01	irgsp1_rep	CDS	43232632	43232712	.	-	0	Parent=Os01t0978100-03
Chr01	irgsp1_rep	CDS	43232360	43232452	.	-	0	Parent=Os01t0978100-03
Chr01	irgsp1_rep	three_prime_UTR	43232036	43232359	.	-	.	Parent=Os01t0978100-03
Chr01	irgsp1_rep	mRNA	43235257	43237244	.	+	.	ID=Os01t0978175-00;Name=Os01t0978175-00;Locus_id=Os01g0978175;Note=Non-protein coding transcript.;Transcript_evidence=AJ622893 (DDBJ);ORF_evidence=NONE;TENOR=Os01t0978175-00
Chr01	irgsp1_rep	exon	43235257	43235571	.	+	.	Parent=Os01t0978175-00
Chr01	irgsp1_rep	exon	43237146	43237244	.	+	.	Parent=Os01t0978175-00
Chr01	irgsp1_rep	mRNA	43244218	43245392	.	+	.	ID=Os01t0978400-01;Name=Os01t0978400-01;Locus_id=Os01g0978400;CGSNL Gene Symbol=CCR26;CGSNL Gene Name=CINNAMOYL-COA REDUCTASE 26;Oryzabase Gene Symbol Synonym(s)=OsCCR26;Oryzabase Gene Name Synonym(s)=Cinnamoyl-CoA reductase 26;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK062411 (DDBJ%2C Best hit);ORF_evidence=NP_178345.1 (RefSeq);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-102-F01;Oryzabase=22251;Expression=AK062411;TENOR=Os01t0978400-01;KEGG=Os01t0978400-01
Chr01	irgsp1_rep	five_prime_UTR	43244218	43244270	.	+	.	Parent=Os01t0978400-01
Chr01	irgsp1_rep	CDS	43244271	43245254	.	+	0	Parent=Os01t0978400-01
Chr01	irgsp1_rep	three_prime_UTR	43245255	43245392	.	+	.	Parent=Os01t0978400-01
Chr01	irgsp1_rep	mRNA	43248497	43249469	.	-	.	ID=Os01t0978500-01;Name=Os01t0978500-01;Locus_id=Os01g0978500;Note=Conserved hypothetical protein.;Transcript_evidence=AK241665 (DDBJ%2C Best hit);ORF_evidence=NP_001172764.1 (RefSeq);NIAS_FLcDNA=J065192B21;TENOR=Os01t0978500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr01	irgsp1_rep	five_prime_UTR	43249215	43249469	.	-	.	Parent=Os01t0978500-01
Chr01	irgsp1_rep	CDS	43248768	43249214	.	-	0	Parent=Os01t0978500-01
Chr01	irgsp1_rep	three_prime_UTR	43248497	43248767	.	-	.	Parent=Os01t0978500-01
Chr02	irgsp1_rep	mRNA	392	2696	.	+	.	ID=Os02t0100050-00;Name=Os02t0100050-00;Locus_id=Os02g0100050;Note=Conserved hypothetical protein.;Transcript_evidence=AK108592 (DDBJ%2C Secondary hit);ORF_evidence=Q67IX7 (UniProt);TENOR=Os02t0100050-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	392	516	.	+	.	Parent=Os02t0100050-00
Chr02	irgsp1_rep	five_prime_UTR	527	595	.	+	.	Parent=Os02t0100050-00
Chr02	irgsp1_rep	five_prime_UTR	610	626	.	+	.	Parent=Os02t0100050-00
Chr02	irgsp1_rep	CDS	627	800	.	+	0	Parent=Os02t0100050-00
Chr02	irgsp1_rep	three_prime_UTR	801	2696	.	+	.	Parent=Os02t0100050-00
Chr02	irgsp1_rep	mRNA	3634	8377	.	-	.	ID=Os02t0100100-01;Name=Os02t0100100-01;Locus_id=Os02g0100100;Oryzabase Gene Symbol Synonym(s)=PDIL1%3B4%2C PDIL1-4%2C PDIL 1-4%2C OsPDIL1-4;Oryzabase Gene Name Synonym(s)=PROTEIN DISULFIDE ISOMERASE-LIKE 1%3B4%2C protein disulfide-isomerase 1-4%2C protein disulfide isomerase 1-4%2C PDI-like protein 1-4;Note=Thioredoxin domain domain containing protein.;Transcript_evidence=AK071514 (DDBJ%2C Best hit);ORF_evidence=Q67IX6 (UniProt);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Cellular Component: endoplasmic reticulum (GO:0005783),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035),Molecular Function: isomerase activity (GO:0016853);InterPro=Thioredoxin (IPR005746),Disulphide isomerase (IPR005788),Protein disulphide isomerase (IPR005792),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766),Thioredoxin%2C conserved site (IPR017937);NIAS_FLcDNA=J023095I04;Oryzabase=9284;Expression=AK071514;TENOR=Os02t0100100-01;KEGG=Os02t0100100-01 (EC:5.3.4.1)
Chr02	irgsp1_rep	five_prime_UTR	8256	8377	.	-	.	Parent=Os02t0100100-01
Chr02	irgsp1_rep	CDS	7753	8255	.	-	0	Parent=Os02t0100100-01
Chr02	irgsp1_rep	CDS	7538	7667	.	-	1	Parent=Os02t0100100-01
Chr02	irgsp1_rep	CDS	7262	7430	.	-	0	Parent=Os02t0100100-01
Chr02	irgsp1_rep	CDS	7045	7163	.	-	2	Parent=Os02t0100100-01
Chr02	irgsp1_rep	CDS	6873	6953	.	-	0	Parent=Os02t0100100-01
Chr02	irgsp1_rep	CDS	6619	6705	.	-	0	Parent=Os02t0100100-01
Chr02	irgsp1_rep	CDS	6419	6493	.	-	0	Parent=Os02t0100100-01
Chr02	irgsp1_rep	CDS	5884	5952	.	-	0	Parent=Os02t0100100-01
Chr02	irgsp1_rep	CDS	5728	5808	.	-	0	Parent=Os02t0100100-01
Chr02	irgsp1_rep	CDS	5514	5648	.	-	0	Parent=Os02t0100100-01
Chr02	irgsp1_rep	CDS	4861	4917	.	-	0	Parent=Os02t0100100-01
Chr02	irgsp1_rep	CDS	3864	4049	.	-	0	Parent=Os02t0100100-01
Chr02	irgsp1_rep	three_prime_UTR	3634	3863	.	-	.	Parent=Os02t0100100-01
Chr02	irgsp1_rep	mRNA	8609	9927	.	+	.	ID=Os02t0100150-01;Name=Os02t0100150-01;Locus_id=Os02g0100150;Note=Hypothetical conserved gene.;Transcript_evidence=AK241037 (DDBJ%2C Best hit);ORF_evidence=NP_001056336.1 (RefSeq);NIAS_FLcDNA=J065059D09;TENOR=Os02t0100150-01;KEGG=Os02t0100150-01
Chr02	irgsp1_rep	five_prime_UTR	8609	8609	.	+	.	Parent=Os02t0100150-01
Chr02	irgsp1_rep	CDS	8610	8777	.	+	0	Parent=Os02t0100150-01
Chr02	irgsp1_rep	three_prime_UTR	8778	9927	.	+	.	Parent=Os02t0100150-01
Chr02	irgsp1_rep	mRNA	9298	13896	.	-	.	ID=Os02t0100200-01;Name=Os02t0100200-01;Locus_id=Os02g0100200;Note=Steroid nuclear receptor%2C ligand-binding domain containing protein.;Transcript_evidence=AK121311 (DDBJ%2C Best hit);ORF_evidence=B8AGU3 (UniProt);InterPro=Enhancer of polycomb-like%2C N-terminal (IPR019542);NIAS_FLcDNA=J023112F22;Expression=AK121311;TENOR=Os02t0100200-01;KEGG=Os02t0100200-01
Chr02	irgsp1_rep	five_prime_UTR	13625	13896	.	-	.	Parent=Os02t0100200-01
Chr02	irgsp1_rep	CDS	12830	13624	.	-	0	Parent=Os02t0100200-01
Chr02	irgsp1_rep	CDS	11328	12749	.	-	0	Parent=Os02t0100200-01
Chr02	irgsp1_rep	CDS	11085	11196	.	-	0	Parent=Os02t0100200-01
Chr02	irgsp1_rep	CDS	9542	9762	.	-	2	Parent=Os02t0100200-01
Chr02	irgsp1_rep	three_prime_UTR	9298	9541	.	-	.	Parent=Os02t0100200-01
Chr02	irgsp1_rep	mRNA	12563	13520	.	+	.	ID=Os02t0100250-00;Name=Os02t0100250-00;Locus_id=Os02g0100250;Note=Hypothetical protein.;Transcript_evidence=BT083581 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0100250-00
Chr02	irgsp1_rep	five_prime_UTR	12563	12736	.	+	.	Parent=Os02t0100250-00
Chr02	irgsp1_rep	five_prime_UTR	12814	13078	.	+	.	Parent=Os02t0100250-00
Chr02	irgsp1_rep	CDS	13079	13520	.	+	0	Parent=Os02t0100250-00
Chr02	irgsp1_rep	mRNA	14095	18477	.	+	.	ID=Os02t0100300-01;Name=Os02t0100300-01;Locus_id=Os02g0100300;RAP-DB Gene Symbol Synonym(s)=OsHSP40%2C HSP40;RAP-DB Gene Name Synonym(s)=heat shock protein 40;CGSNL Gene Symbol=HSP40;CGSNL Gene Name=HEAT SHOCK PROTEIN 40;Oryzabase Gene Symbol Synonym(s)=HSP40%2C OsHSP40;Oryzabase Gene Name Synonym(s)=heat shock protein 40%2C TPR-containing HSP40%2C heat shock protein 40;Note=Heat shock protein (HSP40)%2C Putative tetratricopeptide repeat(TPR)-containing protein%2C Growth and development%2C salt tolerance%2C abiotic stress tolerance;Transcript_evidence=AK102264;ORF_evidence=Q6YUA1;GO=Molecular Function: protein binding (GO:0005515),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Tetratricopeptide-like helical domain superfamily (IPR011990),Hsp70-interacting protein%2C N-terminal (IPR034649),Tetratricopeptide repeat-containing domain (IPR013026),Heat shock chaperonin-binding (IPR006636),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J033088M02;Manual Curation=October 12%2C 2018;Literature_PMID=30298358,27538481;Oryzabase=22580,22604;Expression=AK102264;TENOR=Os02t0100300-01;KEGG=Os02t0100300-01;Subcellular location=cytoplasm (GO:0005737)
Chr02	irgsp1_rep	five_prime_UTR	14095	14147	.	+	.	Parent=Os02t0100300-01
Chr02	irgsp1_rep	CDS	14148	14312	.	+	0	Parent=Os02t0100300-01
Chr02	irgsp1_rep	CDS	14379	14549	.	+	0	Parent=Os02t0100300-01
Chr02	irgsp1_rep	CDS	14620	14707	.	+	0	Parent=Os02t0100300-01
Chr02	irgsp1_rep	CDS	14807	14887	.	+	2	Parent=Os02t0100300-01
Chr02	irgsp1_rep	CDS	14980	15044	.	+	2	Parent=Os02t0100300-01
Chr02	irgsp1_rep	CDS	15357	15497	.	+	0	Parent=Os02t0100300-01
Chr02	irgsp1_rep	CDS	15578	15694	.	+	0	Parent=Os02t0100300-01
Chr02	irgsp1_rep	CDS	15995	16237	.	+	0	Parent=Os02t0100300-01
Chr02	irgsp1_rep	CDS	16326	16383	.	+	0	Parent=Os02t0100300-01
Chr02	irgsp1_rep	CDS	18127	18224	.	+	2	Parent=Os02t0100300-01
Chr02	irgsp1_rep	three_prime_UTR	18225	18477	.	+	.	Parent=Os02t0100300-01
Chr02	irgsp1_rep	mRNA	14146	18232	.	-	.	ID=Os02t0100333-00;Name=Os02t0100333-00;Locus_id=Os02g0100333;Note=Hypothetical gene.;Transcript_evidence=BT018368 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0100333-00;KEGG=Os02t0100333-00
Chr02	irgsp1_rep	five_prime_UTR	18231	18232	.	-	.	Parent=Os02t0100333-00
Chr02	irgsp1_rep	CDS	18135	18230	.	-	0	Parent=Os02t0100333-00
Chr02	irgsp1_rep	CDS	16324	16388	.	-	0	Parent=Os02t0100333-00
Chr02	irgsp1_rep	CDS	16000	16231	.	-	1	Parent=Os02t0100333-00
Chr02	irgsp1_rep	three_prime_UTR	15993	15999	.	-	.	Parent=Os02t0100333-00
Chr02	irgsp1_rep	three_prime_UTR	15562	15697	.	-	.	Parent=Os02t0100333-00
Chr02	irgsp1_rep	three_prime_UTR	15363	15483	.	-	.	Parent=Os02t0100333-00
Chr02	irgsp1_rep	three_prime_UTR	14978	15052	.	-	.	Parent=Os02t0100333-00
Chr02	irgsp1_rep	three_prime_UTR	14813	14885	.	-	.	Parent=Os02t0100333-00
Chr02	irgsp1_rep	three_prime_UTR	14605	14712	.	-	.	Parent=Os02t0100333-00
Chr02	irgsp1_rep	three_prime_UTR	14397	14538	.	-	.	Parent=Os02t0100333-00
Chr02	irgsp1_rep	three_prime_UTR	14146	14323	.	-	.	Parent=Os02t0100333-00
Chr02	irgsp1_rep	mRNA	33032	33966	.	+	.	ID=Os02t0100600-01;Name=Os02t0100600-01;Locus_id=Os02g0100600;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK062483 (DDBJ%2C Best hit);ORF_evidence=A2WZQ6 (UniProt);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=001-103-G07;Expression=AK062483;TENOR=Os02t0100600-01;KEGG=Os02t0100600-01
Chr02	irgsp1_rep	five_prime_UTR	33032	33107	.	+	.	Parent=Os02t0100600-01
Chr02	irgsp1_rep	CDS	33108	33752	.	+	0	Parent=Os02t0100600-01
Chr02	irgsp1_rep	three_prime_UTR	33753	33966	.	+	.	Parent=Os02t0100600-01
Chr02	irgsp1_rep	mRNA	34262	40938	.	+	.	ID=Os02t0100700-01;Name=Os02t0100700-01;Locus_id=Os02g0100700;RAP-DB Gene Symbol Synonym(s)=DPW3;RAP-DB Gene Name Synonym(s)=Defective Pollen Wall 3;CGSNL Gene Symbol=DPW3;CGSNL Gene Name=DEFECTIVE POLLEN WALL 3;Oryzabase Gene Symbol Synonym(s)=OsDPW3;Oryzabase Gene Name Synonym(s)=defective pollen wall 3;Note=Alpha integrin-like protein%2C Pollen wall formation;Transcript_evidence=AK068943;ORF_evidence=Q6YU98;InterPro=Quinoprotein alcohol dehydrogenase-like superfamily (IPR011047);NIAS_FLcDNA=J013170D03;Manual Curation=September 20%2C 2019;Literature_PMID=31486533;Oryzabase=23342;Expression=AK068943;TENOR=Os02t0100700-01;KEGG=Os02t0100700-01;Subcellular location=plasma membrane (GO:0005886), endoplasmic reticulum (GO:0005783), Golgi apparatus (GO:0005794)
Chr02	irgsp1_rep	five_prime_UTR	34262	34435	.	+	.	Parent=Os02t0100700-01
Chr02	irgsp1_rep	CDS	34436	34498	.	+	0	Parent=Os02t0100700-01
Chr02	irgsp1_rep	CDS	34578	35120	.	+	0	Parent=Os02t0100700-01
Chr02	irgsp1_rep	CDS	35566	35643	.	+	0	Parent=Os02t0100700-01
Chr02	irgsp1_rep	CDS	35823	35915	.	+	0	Parent=Os02t0100700-01
Chr02	irgsp1_rep	CDS	36086	36181	.	+	0	Parent=Os02t0100700-01
Chr02	irgsp1_rep	CDS	36709	36762	.	+	0	Parent=Os02t0100700-01
Chr02	irgsp1_rep	CDS	36856	37059	.	+	0	Parent=Os02t0100700-01
Chr02	irgsp1_rep	CDS	38577	38708	.	+	0	Parent=Os02t0100700-01
Chr02	irgsp1_rep	CDS	39042	39107	.	+	0	Parent=Os02t0100700-01
Chr02	irgsp1_rep	CDS	39885	40184	.	+	0	Parent=Os02t0100700-01
Chr02	irgsp1_rep	CDS	40332	40808	.	+	0	Parent=Os02t0100700-01
Chr02	irgsp1_rep	three_prime_UTR	40809	40938	.	+	.	Parent=Os02t0100700-01
Chr02	irgsp1_rep	mRNA	34575	37640	.	+	.	ID=Os02t0100700-02;Name=Os02t0100700-02;Locus_id=Os02g0100700;CGSNL Gene Symbol=DPW3;CGSNL Gene Name=DEFECTIVE POLLEN WALL 3;Oryzabase Gene Symbol Synonym(s)=OsDPW3;Oryzabase Gene Name Synonym(s)=defective pollen wall 3;Note=Similar to predicted protein.;Transcript_evidence=AK070106 (DDBJ%2C Best hit);ORF_evidence=XP_002876065.1 (RefSeq);InterPro=Quinonprotein alcohol dehydrogenase-like (IPR011047);NIAS_FLcDNA=J023044K08;Oryzabase=23342;Expression=AK070106;TENOR=Os02t0100700-02;KEGG=Os02t0100700-02
Chr02	irgsp1_rep	CDS	34575	35120	.	+	0	Parent=Os02t0100700-02
Chr02	irgsp1_rep	CDS	35566	35643	.	+	0	Parent=Os02t0100700-02
Chr02	irgsp1_rep	CDS	35823	35915	.	+	0	Parent=Os02t0100700-02
Chr02	irgsp1_rep	CDS	36086	36181	.	+	0	Parent=Os02t0100700-02
Chr02	irgsp1_rep	CDS	36709	36762	.	+	0	Parent=Os02t0100700-02
Chr02	irgsp1_rep	CDS	36856	37065	.	+	0	Parent=Os02t0100700-02
Chr02	irgsp1_rep	three_prime_UTR	37066	37640	.	+	.	Parent=Os02t0100700-02
Chr02	irgsp1_rep	mRNA	42347	43012	.	-	.	ID=Os02t0100800-01;Name=Os02t0100800-01;Locus_id=Os02g0100800;Note=Conserved hypothetical protein.;Transcript_evidence=AK062555 (DDBJ%2C Best hit);ORF_evidence=B9F1N0 (UniProt);NIAS_FLcDNA=001-104-H07;TENOR=Os02t0100800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	42752	43012	.	-	0	Parent=Os02t0100800-01
Chr02	irgsp1_rep	three_prime_UTR	42347	42751	.	-	.	Parent=Os02t0100800-01
Chr02	irgsp1_rep	mRNA	50308	55886	.	-	.	ID=Os02t0101000-01;Name=Os02t0101000-01;Locus_id=Os02g0101000;Oryzabase Gene Symbol Synonym(s)=OsATL11%2C OsAux/LAX1%2C OSLAX1;Oryzabase Gene Name Synonym(s)=amino acid transporter-like 11%2C OsAux/LAX1 protein;Note=Amino acid transporter%2C transmembrane domain containing protein.;Transcript_evidence=AK074023 (DDBJ%2C Best hit);ORF_evidence=NP_001150669.1 (RefSeq);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=J033075N18;Oryzabase=18528;Expression=AK074023;TENOR=Os02t0101000-01;KEGG=Os02t0101000-01
Chr02	irgsp1_rep	five_prime_UTR	55762	55886	.	-	.	Parent=Os02t0101000-01
Chr02	irgsp1_rep	five_prime_UTR	55627	55675	.	-	.	Parent=Os02t0101000-01
Chr02	irgsp1_rep	CDS	55397	55626	.	-	0	Parent=Os02t0101000-01
Chr02	irgsp1_rep	CDS	54804	55147	.	-	1	Parent=Os02t0101000-01
Chr02	irgsp1_rep	CDS	53585	53799	.	-	2	Parent=Os02t0101000-01
Chr02	irgsp1_rep	CDS	53452	53475	.	-	0	Parent=Os02t0101000-01
Chr02	irgsp1_rep	CDS	52780	52960	.	-	0	Parent=Os02t0101000-01
Chr02	irgsp1_rep	CDS	52435	52654	.	-	2	Parent=Os02t0101000-01
Chr02	irgsp1_rep	CDS	52205	52340	.	-	1	Parent=Os02t0101000-01
Chr02	irgsp1_rep	CDS	51606	51629	.	-	0	Parent=Os02t0101000-01
Chr02	irgsp1_rep	CDS	51048	51186	.	-	0	Parent=Os02t0101000-01
Chr02	irgsp1_rep	CDS	50918	50961	.	-	2	Parent=Os02t0101000-01
Chr02	irgsp1_rep	CDS	50767	50829	.	-	0	Parent=Os02t0101000-01
Chr02	irgsp1_rep	CDS	50576	50671	.	-	0	Parent=Os02t0101000-01
Chr02	irgsp1_rep	three_prime_UTR	50308	50575	.	-	.	Parent=Os02t0101000-01
Chr02	irgsp1_rep	mRNA	50407	55683	.	-	.	ID=Os02t0101000-02;Name=Os02t0101000-02;Locus_id=Os02g0101000;Oryzabase Gene Symbol Synonym(s)=OsATL11%2C OsAux/LAX1%2C OSLAX1;Oryzabase Gene Name Synonym(s)=amino acid transporter-like 11%2C OsAux/LAX1 protein;Note=Similar to amino acid permease.;Transcript_evidence=AK061115 (DDBJ%2C Best hit);ORF_evidence=Q25AF7 (UniProt);NIAS_FLcDNA=006-207-E03;Oryzabase=18528;Expression=AK061115;TENOR=Os02t0101000-02;KEGG=Os02t0101000-02
Chr02	irgsp1_rep	five_prime_UTR	55627	55683	.	-	.	Parent=Os02t0101000-02
Chr02	irgsp1_rep	CDS	55397	55626	.	-	0	Parent=Os02t0101000-02
Chr02	irgsp1_rep	CDS	54804	55147	.	-	1	Parent=Os02t0101000-02
Chr02	irgsp1_rep	CDS	53760	53799	.	-	2	Parent=Os02t0101000-02
Chr02	irgsp1_rep	CDS	51048	51074	.	-	1	Parent=Os02t0101000-02
Chr02	irgsp1_rep	CDS	50918	50961	.	-	1	Parent=Os02t0101000-02
Chr02	irgsp1_rep	CDS	50789	50829	.	-	2	Parent=Os02t0101000-02
Chr02	irgsp1_rep	three_prime_UTR	50767	50788	.	-	.	Parent=Os02t0101000-02
Chr02	irgsp1_rep	three_prime_UTR	50407	50671	.	-	.	Parent=Os02t0101000-02
Chr02	irgsp1_rep	mRNA	59323	64707	.	+	.	ID=Os02t0101100-01;Name=Os02t0101100-01;Locus_id=Os02g0101100;Note=Initiation factor 3 family protein.;Transcript_evidence=AK068038 (DDBJ%2C Best hit);ORF_evidence=B8AGU7 (UniProt);GO=Biological Process: translational initiation (GO:0006413),Molecular Function: translation initiation factor activity (GO:0003743);InterPro=Translation initiation factor 3 (IPR001288),Translation initiation factor 3%2C N-terminal (IPR019814),Translation initiation factor 3%2C C-terminal (IPR019815);NIAS_FLcDNA=J013129P11;Expression=AK068038;TENOR=Os02t0101100-01;KEGG=Os02t0101100-01
Chr02	irgsp1_rep	five_prime_UTR	59323	59370	.	+	.	Parent=Os02t0101100-01
Chr02	irgsp1_rep	CDS	59371	59523	.	+	0	Parent=Os02t0101100-01
Chr02	irgsp1_rep	CDS	59632	59725	.	+	0	Parent=Os02t0101100-01
Chr02	irgsp1_rep	CDS	59797	59864	.	+	2	Parent=Os02t0101100-01
Chr02	irgsp1_rep	CDS	60145	60243	.	+	0	Parent=Os02t0101100-01
Chr02	irgsp1_rep	CDS	60538	60594	.	+	0	Parent=Os02t0101100-01
Chr02	irgsp1_rep	CDS	60943	61011	.	+	0	Parent=Os02t0101100-01
Chr02	irgsp1_rep	CDS	63161	63229	.	+	0	Parent=Os02t0101100-01
Chr02	irgsp1_rep	CDS	63372	64322	.	+	0	Parent=Os02t0101100-01
Chr02	irgsp1_rep	three_prime_UTR	64323	64707	.	+	.	Parent=Os02t0101100-01
Chr02	irgsp1_rep	mRNA	73183	73864	.	-	.	ID=Os02t0101300-01;Name=Os02t0101300-01;Locus_id=Os02g0101300;Note=Similar to OSIGBa0159F11.8 protein.;Transcript_evidence=AK105715 (DDBJ%2C Best hit);ORF_evidence=Q01IQ6 (UniProt);NIAS_FLcDNA=001-201-F03;TENOR=Os02t0101300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	73420	73864	.	-	.	Parent=Os02t0101300-01
Chr02	irgsp1_rep	CDS	73183	73419	.	-	0	Parent=Os02t0101300-01
Chr02	irgsp1_rep	mRNA	78461	79533	.	+	.	ID=Os02t0101400-01;Name=Os02t0101400-01;Locus_id=Os02g0101400;CGSNL Gene Symbol=GELP29;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 29;Oryzabase Gene Symbol Synonym(s)=OsGELP29;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 29;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK067036 (DDBJ%2C Best hit);ORF_evidence=B6T2M4 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=J013092C19;Oryzabase=10979;Expression=AK067036;TENOR=Os02t0101400-01;KEGG=Os02t0101400-01
Chr02	irgsp1_rep	five_prime_UTR	78461	78462	.	+	.	Parent=Os02t0101400-01
Chr02	irgsp1_rep	CDS	78463	78487	.	+	0	Parent=Os02t0101400-01
Chr02	irgsp1_rep	CDS	78594	79417	.	+	2	Parent=Os02t0101400-01
Chr02	irgsp1_rep	three_prime_UTR	79418	79533	.	+	.	Parent=Os02t0101400-01
Chr02	irgsp1_rep	mRNA	79729	82952	.	-	.	ID=Os02t0101500-01;Name=Os02t0101500-01;Locus_id=Os02g0101500;RAP-DB Gene Symbol Synonym(s)=OsHPR1%2C HPR1;RAP-DB Gene Name Synonym(s)=hydroxypyruvate reductase 1%2C peroxisomal HPR1;Oryzabase Gene Symbol Synonym(s)=OsHPR1%2C HPR1;Oryzabase Gene Name Synonym(s)=hydroxypyruvate reductase 1%2C peroxisomal HPR1;Note=Peroxisomal hydroxypyruvate reductase%2C NADH-dependent HPR%2C Photorespiratory metabolism;Transcript_evidence=AK067642;ORF_evidence=Q6YU90;GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: NAD binding (GO:0051287);InterPro=D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain (IPR006139),NAD(P)-binding domain (IPR016040),D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding domain (IPR006140),D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding domain conserved site 1 (IPR029752);NIAS_FLcDNA=J013108J23;Manual Curation=January 20%2C 2017;Literature_PMID=24401104;Oryzabase=15626;Expression=AK067642;TENOR=Os02t0101500-01;KEGG=Os02t0101500-01 (EC:1.1.1.29)
Chr02	irgsp1_rep	five_prime_UTR	82805	82952	.	-	.	Parent=Os02t0101500-01
Chr02	irgsp1_rep	CDS	82682	82804	.	-	0	Parent=Os02t0101500-01
Chr02	irgsp1_rep	CDS	82509	82592	.	-	0	Parent=Os02t0101500-01
Chr02	irgsp1_rep	CDS	82300	82440	.	-	0	Parent=Os02t0101500-01
Chr02	irgsp1_rep	CDS	82096	82217	.	-	0	Parent=Os02t0101500-01
Chr02	irgsp1_rep	CDS	81923	82004	.	-	1	Parent=Os02t0101500-01
Chr02	irgsp1_rep	CDS	81731	81803	.	-	0	Parent=Os02t0101500-01
Chr02	irgsp1_rep	CDS	81213	81304	.	-	2	Parent=Os02t0101500-01
Chr02	irgsp1_rep	CDS	81027	81101	.	-	0	Parent=Os02t0101500-01
Chr02	irgsp1_rep	CDS	80726	80911	.	-	0	Parent=Os02t0101500-01
Chr02	irgsp1_rep	CDS	80480	80524	.	-	0	Parent=Os02t0101500-01
Chr02	irgsp1_rep	CDS	80194	80308	.	-	0	Parent=Os02t0101500-01
Chr02	irgsp1_rep	CDS	80082	80104	.	-	2	Parent=Os02t0101500-01
Chr02	irgsp1_rep	three_prime_UTR	79729	80081	.	-	.	Parent=Os02t0101500-01
Chr02	irgsp1_rep	mRNA	78483	82880	.	-	.	ID=Os02t0101500-02;Name=Os02t0101500-02;Locus_id=Os02g0101500;Oryzabase Gene Symbol Synonym(s)=OsHPR1%2C HPR1;Oryzabase Gene Name Synonym(s)=hydroxypyruvate reductase 1%2C peroxisomal HPR1;Note=Similar to NADH-dependent hydroxypyruvate reductase (EC 1.1.1.29) (Fragment).;Transcript_evidence=AK072105 (DDBJ%2C Best hit);ORF_evidence=Q93XV7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: cofactor binding (GO:0048037),Molecular Function: NAD binding (GO:0051287);InterPro=D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain (IPR006139),D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding (IPR006140),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013119J12;Oryzabase=15626;Expression=AK072105;TENOR=Os02t0101500-02;KEGG=Os02t0101500-02 (EC:1.1.1.29)
Chr02	irgsp1_rep	five_prime_UTR	82805	82880	.	-	.	Parent=Os02t0101500-02
Chr02	irgsp1_rep	CDS	82682	82804	.	-	0	Parent=Os02t0101500-02
Chr02	irgsp1_rep	CDS	82509	82592	.	-	0	Parent=Os02t0101500-02
Chr02	irgsp1_rep	CDS	82300	82440	.	-	0	Parent=Os02t0101500-02
Chr02	irgsp1_rep	CDS	82096	82217	.	-	0	Parent=Os02t0101500-02
Chr02	irgsp1_rep	CDS	81923	82004	.	-	1	Parent=Os02t0101500-02
Chr02	irgsp1_rep	CDS	81731	81803	.	-	0	Parent=Os02t0101500-02
Chr02	irgsp1_rep	CDS	81213	81304	.	-	2	Parent=Os02t0101500-02
Chr02	irgsp1_rep	CDS	81027	81101	.	-	0	Parent=Os02t0101500-02
Chr02	irgsp1_rep	CDS	80726	80911	.	-	0	Parent=Os02t0101500-02
Chr02	irgsp1_rep	CDS	80480	80524	.	-	0	Parent=Os02t0101500-02
Chr02	irgsp1_rep	CDS	80194	80308	.	-	0	Parent=Os02t0101500-02
Chr02	irgsp1_rep	CDS	80082	80104	.	-	2	Parent=Os02t0101500-02
Chr02	irgsp1_rep	three_prime_UTR	78483	80081	.	-	.	Parent=Os02t0101500-02
Chr02	irgsp1_rep	mRNA	83413	85637	.	-	.	ID=Os02t0101600-00;Name=Os02t0101600-00;Locus_id=Os02g0101600;Note=Similar to SKP1-like protein 1A.;Transcript_evidence=AK248186 (DDBJ);ORF_evidence=B6T1N1 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);InterPro=SKP1 component (IPR001232),BTB/POZ fold (IPR011333),SKP1 component%2C POZ (IPR016073);TENOR=Os02t0101600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	85336	85637	.	-	0	Parent=Os02t0101600-00
Chr02	irgsp1_rep	CDS	85214	85263	.	-	1	Parent=Os02t0101600-00
Chr02	irgsp1_rep	CDS	83499	83632	.	-	2	Parent=Os02t0101600-00
Chr02	irgsp1_rep	three_prime_UTR	83413	83498	.	-	.	Parent=Os02t0101600-00
Chr02	irgsp1_rep	mRNA	86724	90020	.	-	.	ID=Os02t0101700-01;Name=Os02t0101700-01;Locus_id=Os02g0101700;Note=Similar to KAK (KAKTUS)%3B ubiquitin-protein ligase.;Transcript_evidence=AK105706 (DDBJ%2C Best hit);ORF_evidence=NP_849567.2 (RefSeq);GO=Biological Process: protein modification process (GO:0006464),Cellular Component: intracellular (GO:0005622),Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=HECT (IPR000569);NIAS_FLcDNA=001-201-E03;TENOR=Os02t0101700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	88665	90020	.	-	0	Parent=Os02t0101700-01
Chr02	irgsp1_rep	CDS	88338	88568	.	-	0	Parent=Os02t0101700-01
Chr02	irgsp1_rep	CDS	88133	88237	.	-	0	Parent=Os02t0101700-01
Chr02	irgsp1_rep	CDS	87962	88042	.	-	0	Parent=Os02t0101700-01
Chr02	irgsp1_rep	CDS	87801	87869	.	-	0	Parent=Os02t0101700-01
Chr02	irgsp1_rep	CDS	87593	87721	.	-	0	Parent=Os02t0101700-01
Chr02	irgsp1_rep	CDS	87376	87495	.	-	0	Parent=Os02t0101700-01
Chr02	irgsp1_rep	CDS	87215	87280	.	-	0	Parent=Os02t0101700-01
Chr02	irgsp1_rep	three_prime_UTR	87064	87214	.	-	.	Parent=Os02t0101700-01
Chr02	irgsp1_rep	three_prime_UTR	86724	86976	.	-	.	Parent=Os02t0101700-01
Chr02	irgsp1_rep	mRNA	89109	89819	.	-	.	ID=Os02t0101700-02;Name=Os02t0101700-02;Locus_id=Os02g0101700;Note=Similar to predicted protein.;Transcript_evidence=AK072570 (DDBJ%2C Best hit);ORF_evidence=NP_195572.2 (RefSeq);NIAS_FLcDNA=J023126M20;Expression=AK072570;TENOR=Os02t0101700-02;KEGG=Os02t0101700-02 (EC:6.3.2.19)
Chr02	irgsp1_rep	CDS	89109	89819	.	-	0	Parent=Os02t0101700-02
Chr02	irgsp1_rep	mRNA	91535	93712	.	+	.	ID=Os02t0101750-00;Name=Os02t0101750-00;Locus_id=Os02g0101750;Note=Hypothetical gene.;Transcript_evidence=AM750004 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0101750-00
Chr02	irgsp1_rep	five_prime_UTR	91535	92163	.	+	.	Parent=Os02t0101750-00
Chr02	irgsp1_rep	five_prime_UTR	92406	92564	.	+	.	Parent=Os02t0101750-00
Chr02	irgsp1_rep	five_prime_UTR	92661	92931	.	+	.	Parent=Os02t0101750-00
Chr02	irgsp1_rep	five_prime_UTR	93168	93357	.	+	.	Parent=Os02t0101750-00
Chr02	irgsp1_rep	five_prime_UTR	93434	93488	.	+	.	Parent=Os02t0101750-00
Chr02	irgsp1_rep	CDS	93489	93712	.	+	0	Parent=Os02t0101750-00
Chr02	irgsp1_rep	mRNA	98001	107811	.	-	.	ID=Os02t0101800-01;Name=Os02t0101800-01;Locus_id=Os02g0101800;Note=Kinesin%2C motor domain domain containing protein.;Transcript_evidence=AK102833 (DDBJ%2C Best hit);ORF_evidence=B9F1N7 (UniProt);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752);NIAS_FLcDNA=J033109J12;TENOR=Os02t0101800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	107434	107811	.	-	0	Parent=Os02t0101800-01
Chr02	irgsp1_rep	CDS	107138	107340	.	-	0	Parent=Os02t0101800-01
Chr02	irgsp1_rep	CDS	106844	106964	.	-	1	Parent=Os02t0101800-01
Chr02	irgsp1_rep	CDS	106497	106591	.	-	0	Parent=Os02t0101800-01
Chr02	irgsp1_rep	CDS	106144	106279	.	-	1	Parent=Os02t0101800-01
Chr02	irgsp1_rep	CDS	105945	106010	.	-	0	Parent=Os02t0101800-01
Chr02	irgsp1_rep	CDS	105740	105802	.	-	0	Parent=Os02t0101800-01
Chr02	irgsp1_rep	CDS	105182	105232	.	-	0	Parent=Os02t0101800-01
Chr02	irgsp1_rep	CDS	104497	104579	.	-	0	Parent=Os02t0101800-01
Chr02	irgsp1_rep	CDS	103399	103498	.	-	1	Parent=Os02t0101800-01
Chr02	irgsp1_rep	CDS	102993	103047	.	-	0	Parent=Os02t0101800-01
Chr02	irgsp1_rep	CDS	102636	102757	.	-	2	Parent=Os02t0101800-01
Chr02	irgsp1_rep	CDS	101915	102151	.	-	0	Parent=Os02t0101800-01
Chr02	irgsp1_rep	CDS	101226	101301	.	-	0	Parent=Os02t0101800-01
Chr02	irgsp1_rep	CDS	101064	101143	.	-	2	Parent=Os02t0101800-01
Chr02	irgsp1_rep	CDS	100853	100918	.	-	0	Parent=Os02t0101800-01
Chr02	irgsp1_rep	CDS	100541	100655	.	-	0	Parent=Os02t0101800-01
Chr02	irgsp1_rep	CDS	100169	100315	.	-	2	Parent=Os02t0101800-01
Chr02	irgsp1_rep	CDS	100008	100093	.	-	2	Parent=Os02t0101800-01
Chr02	irgsp1_rep	CDS	99363	99432	.	-	0	Parent=Os02t0101800-01
Chr02	irgsp1_rep	CDS	99139	99230	.	-	2	Parent=Os02t0101800-01
Chr02	irgsp1_rep	CDS	98830	98921	.	-	0	Parent=Os02t0101800-01
Chr02	irgsp1_rep	CDS	98635	98707	.	-	1	Parent=Os02t0101800-01
Chr02	irgsp1_rep	CDS	98311	98412	.	-	0	Parent=Os02t0101800-01
Chr02	irgsp1_rep	three_prime_UTR	98001	98310	.	-	.	Parent=Os02t0101800-01
Chr02	irgsp1_rep	mRNA	110806	112358	.	+	.	ID=Os02t0101900-01;Name=Os02t0101900-01;Locus_id=Os02g0101900;Oryzabase Gene Symbol Synonym(s)=AGP%2C OsAGP;Oryzabase Gene Name Synonym(s)=Arabinogalactan protein;Note=Conserved hypothetical protein.;Transcript_evidence=AK106664 (DDBJ%2C Best hit);ORF_evidence=A3A255 (UniProt);NIAS_FLcDNA=002-113-H05;Oryzabase=23023;TENOR=Os02t0101900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	110806	110807	.	+	.	Parent=Os02t0101900-01
Chr02	irgsp1_rep	CDS	110808	111023	.	+	0	Parent=Os02t0101900-01
Chr02	irgsp1_rep	three_prime_UTR	111024	111768	.	+	.	Parent=Os02t0101900-01
Chr02	irgsp1_rep	three_prime_UTR	111847	112358	.	+	.	Parent=Os02t0101900-01
Chr02	irgsp1_rep	mRNA	112766	115204	.	-	.	ID=Os02t0102000-00;Name=Os02t0102000-00;Locus_id=Os02g0102000;Oryzabase Gene Symbol Synonym(s)=OsGRL3;Oryzabase Gene Name Synonym(s)=GRX-like protein 3%2C glutaredoxin-like protein 3;Note=Similar to OSIGBa0134P10.4 protein.;Transcript_evidence=BT061316 (DDBJ);ORF_evidence=Q01IT2 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin (IPR002109),Thioredoxin-like fold (IPR012336);Oryzabase=13593;TENOR=Os02t0102000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	114777	115204	.	-	0	Parent=Os02t0102000-00
Chr02	irgsp1_rep	CDS	112766	113306	.	-	1	Parent=Os02t0102000-00
Chr02	irgsp1_rep	mRNA	119391	121684	.	+	.	ID=Os02t0102200-01;Name=Os02t0102200-01;Locus_id=Os02g0102200;CGSNL Gene Symbol=AAP3;CGSNL Gene Name=AMINO ACID PERMEASE 3;Oryzabase Gene Symbol Synonym(s)=OsAAP3%2C OsAAP9%2C AAP9;Oryzabase Gene Name Synonym(s)=amino acid permease 3%2C amino acid permease 9%2C amino acid/auxin permease 9;Note=Similar to Transmembrane amino acid transporter protein.;Transcript_evidence=AK060685 (DDBJ%2C Best hit);ORF_evidence=Q9ARG2 (UniProt);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=001-029-G03;Oryzabase=18493;Expression=AK060685;TENOR=Os02t0102200-01;KEGG=Os02t0102200-01
Chr02	irgsp1_rep	five_prime_UTR	119391	119441	.	+	.	Parent=Os02t0102200-01
Chr02	irgsp1_rep	five_prime_UTR	119629	119679	.	+	.	Parent=Os02t0102200-01
Chr02	irgsp1_rep	CDS	119680	119733	.	+	0	Parent=Os02t0102200-01
Chr02	irgsp1_rep	CDS	119842	120238	.	+	0	Parent=Os02t0102200-01
Chr02	irgsp1_rep	CDS	120331	120424	.	+	2	Parent=Os02t0102200-01
Chr02	irgsp1_rep	CDS	120518	121529	.	+	1	Parent=Os02t0102200-01
Chr02	irgsp1_rep	three_prime_UTR	121530	121684	.	+	.	Parent=Os02t0102200-01
Chr02	irgsp1_rep	mRNA	119975	121517	.	-	.	ID=Os02t0102250-00;Name=Os02t0102250-00;Locus_id=Os02g0102250;Note=Hypothetical protein.;Transcript_evidence=tplb0036o08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0102250-00
Chr02	irgsp1_rep	CDS	120516	121517	.	-	0	Parent=Os02t0102250-00
Chr02	irgsp1_rep	CDS	120330	120422	.	-	0	Parent=Os02t0102250-00
Chr02	irgsp1_rep	CDS	120052	120237	.	-	0	Parent=Os02t0102250-00
Chr02	irgsp1_rep	three_prime_UTR	119975	120051	.	-	.	Parent=Os02t0102250-00
Chr02	irgsp1_rep	mRNA	124645	127131	.	+	.	ID=Os02t0102300-01;Name=Os02t0102300-01;Locus_id=Os02g0102300;RAP-DB Gene Symbol Synonym(s)=STR5%2C OsHAC1%3B1%2C OsStr5;RAP-DB Gene Name Synonym(s)=SULFURTRANSFERASE 5%2C Sulfurtransferase 5;CGSNL Gene Symbol=STR5;CGSNL Gene Name=SULFURTRANSFERASE 5;Oryzabase Gene Symbol Synonym(s)=OsStr5%2C OsHAC1%3B1%2C HAC1%3B1;Oryzabase Gene Name Synonym(s)=Sulfurtransferase 5%2C High As Content 1%3B1;Note=Arsenate reductase%2C Sulfurtransferase/rhodanese-like protein%2C Regulation of arsenic accumulation;Transcript_evidence=AK067143;ORF_evidence=Q0E4S8,Q6YU82;InterPro=Rhodanese-like domain (IPR001763);NIAS_FLcDNA=J013095M22;Manual Curation=November 7%2C 2016;Literature_PMID=27702843,21821426;Oryzabase=12055;Expression=AK067143;TENOR=Os02t0102300-01;KEGG=Os02t0102300-01 (EC:2.8.1.1)
Chr02	irgsp1_rep	five_prime_UTR	124645	124870	.	+	.	Parent=Os02t0102300-01
Chr02	irgsp1_rep	CDS	124871	124893	.	+	0	Parent=Os02t0102300-01
Chr02	irgsp1_rep	CDS	125030	125128	.	+	1	Parent=Os02t0102300-01
Chr02	irgsp1_rep	CDS	125379	125456	.	+	1	Parent=Os02t0102300-01
Chr02	irgsp1_rep	CDS	125854	125920	.	+	1	Parent=Os02t0102300-01
Chr02	irgsp1_rep	CDS	126038	126091	.	+	0	Parent=Os02t0102300-01
Chr02	irgsp1_rep	CDS	126816	126908	.	+	0	Parent=Os02t0102300-01
Chr02	irgsp1_rep	three_prime_UTR	126909	127131	.	+	.	Parent=Os02t0102300-01
Chr02	irgsp1_rep	mRNA	126773	130152	.	-	.	ID=Os02t0102400-01;Name=Os02t0102400-01;Locus_id=Os02g0102400;Note=Ribosomal protein S5 family protein.;Transcript_evidence=AK288693 (DDBJ%2C Best hit);ORF_evidence=B6SVP3 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S5 (IPR000851),Ribosomal protein S5%2C C-terminal (IPR005324),Ribosomal protein S5%2C N-terminal (IPR013810),Double-stranded RNA-binding-like (IPR014720),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=J090060M06;TENOR=Os02t0102400-01;KEGG=Os02t0102400-01
Chr02	irgsp1_rep	five_prime_UTR	130119	130152	.	-	.	Parent=Os02t0102400-01
Chr02	irgsp1_rep	CDS	129623	130118	.	-	0	Parent=Os02t0102400-01
Chr02	irgsp1_rep	CDS	129018	129544	.	-	2	Parent=Os02t0102400-01
Chr02	irgsp1_rep	CDS	128849	128899	.	-	0	Parent=Os02t0102400-01
Chr02	irgsp1_rep	CDS	128649	128756	.	-	0	Parent=Os02t0102400-01
Chr02	irgsp1_rep	CDS	128099	128194	.	-	0	Parent=Os02t0102400-01
Chr02	irgsp1_rep	CDS	127903	128004	.	-	0	Parent=Os02t0102400-01
Chr02	irgsp1_rep	CDS	127760	127819	.	-	0	Parent=Os02t0102400-01
Chr02	irgsp1_rep	CDS	127572	127637	.	-	0	Parent=Os02t0102400-01
Chr02	irgsp1_rep	three_prime_UTR	126773	127571	.	-	.	Parent=Os02t0102400-01
Chr02	irgsp1_rep	mRNA	127079	130126	.	-	.	ID=Os02t0102400-02;Name=Os02t0102400-02;Locus_id=Os02g0102400;Note=Ribosomal protein S5 family protein.;Transcript_evidence=AK122073 (DDBJ%2C Best hit);ORF_evidence=B6SVP3 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S5 (IPR000851),Ribosomal protein S5%2C C-terminal (IPR005324),Ribosomal protein S5%2C N-terminal (IPR013810),Double-stranded RNA-binding-like (IPR014720),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=J033117P11;Expression=AK122073;TENOR=Os02t0102400-02;KEGG=Os02t0102400-02
Chr02	irgsp1_rep	five_prime_UTR	130119	130126	.	-	.	Parent=Os02t0102400-02
Chr02	irgsp1_rep	CDS	129623	130118	.	-	0	Parent=Os02t0102400-02
Chr02	irgsp1_rep	CDS	129018	129544	.	-	2	Parent=Os02t0102400-02
Chr02	irgsp1_rep	CDS	128849	128899	.	-	0	Parent=Os02t0102400-02
Chr02	irgsp1_rep	CDS	128649	128756	.	-	0	Parent=Os02t0102400-02
Chr02	irgsp1_rep	CDS	128099	128194	.	-	0	Parent=Os02t0102400-02
Chr02	irgsp1_rep	CDS	127903	128004	.	-	0	Parent=Os02t0102400-02
Chr02	irgsp1_rep	CDS	127760	127819	.	-	0	Parent=Os02t0102400-02
Chr02	irgsp1_rep	CDS	127572	127637	.	-	0	Parent=Os02t0102400-02
Chr02	irgsp1_rep	three_prime_UTR	127079	127571	.	-	.	Parent=Os02t0102400-02
Chr02	irgsp1_rep	mRNA	127169	127967	.	-	.	ID=Os02t0102400-03;Name=Os02t0102400-03;Locus_id=Os02g0102400;Note=Ribosomal protein S5 family protein.;Transcript_evidence=AK059054 (DDBJ%2C Best hit);ORF_evidence=B6SVP3 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S5 (IPR000851),Ribosomal protein S5%2C C-terminal (IPR005324),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=001-021-F01;Expression=AK059054;TENOR=Os02t0102400-03;KEGG=Os02t0102400-03
Chr02	irgsp1_rep	five_prime_UTR	127966	127967	.	-	.	Parent=Os02t0102400-03
Chr02	irgsp1_rep	CDS	127903	127965	.	-	0	Parent=Os02t0102400-03
Chr02	irgsp1_rep	CDS	127760	127819	.	-	0	Parent=Os02t0102400-03
Chr02	irgsp1_rep	CDS	127572	127637	.	-	0	Parent=Os02t0102400-03
Chr02	irgsp1_rep	three_prime_UTR	127169	127571	.	-	.	Parent=Os02t0102400-03
Chr02	irgsp1_rep	mRNA	132984	135144	.	+	.	ID=Os02t0102600-01;Name=Os02t0102600-01;Locus_id=Os02g0102600;Note=Ankyrin repeat containing protein.;Transcript_evidence=AK103103 (DDBJ%2C Best hit),AK060523 (DDBJ%2C Best hit);ORF_evidence=B4FRA5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J033118O11,001-020-E05;TENOR=Os02t0102600-01
Chr02	irgsp1_rep	five_prime_UTR	132984	133472	.	+	.	Parent=Os02t0102600-01
Chr02	irgsp1_rep	CDS	133473	133589	.	+	0	Parent=Os02t0102600-01
Chr02	irgsp1_rep	CDS	133936	134107	.	+	0	Parent=Os02t0102600-01
Chr02	irgsp1_rep	CDS	134662	134873	.	+	2	Parent=Os02t0102600-01
Chr02	irgsp1_rep	three_prime_UTR	134874	135144	.	+	.	Parent=Os02t0102600-01
Chr02	irgsp1_rep	mRNA	135305	138097	.	-	.	ID=Os02t0102700-01;Name=Os02t0102700-01;Locus_id=Os02g0102700;Oryzabase Gene Name Synonym(s)=Sm gene%2C Sm family protein;Note=Similar to AGL157Cp.;Transcript_evidence=AK061193 (DDBJ%2C Best hit),AK103689 (DDBJ%2C Best hit);ORF_evidence=B6UGP6 (UniProt);NIAS_FLcDNA=006-209-F11,J033136G21;Oryzabase=15638;TENOR=Os02t0102700-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	137921	138097	.	-	.	Parent=Os02t0102700-01
Chr02	irgsp1_rep	CDS	137762	137920	.	-	0	Parent=Os02t0102700-01
Chr02	irgsp1_rep	CDS	137559	137678	.	-	0	Parent=Os02t0102700-01
Chr02	irgsp1_rep	CDS	137426	137482	.	-	0	Parent=Os02t0102700-01
Chr02	irgsp1_rep	CDS	135655	135717	.	-	0	Parent=Os02t0102700-01
Chr02	irgsp1_rep	three_prime_UTR	135305	135654	.	-	.	Parent=Os02t0102700-01
Chr02	irgsp1_rep	mRNA	135302	138075	.	-	.	ID=Os02t0102700-02;Name=Os02t0102700-02;Locus_id=Os02g0102700;Oryzabase Gene Name Synonym(s)=Sm gene%2C Sm family protein;Note=Similar to AGL157Cp.;Transcript_evidence=AK061558 (DDBJ%2C Best hit);ORF_evidence=B6UGP6 (UniProt);InterPro=Like-Sm ribonucleoprotein (LSM) domain (IPR001163),Like-Sm ribonucleoprotein (LSM) domain%2C eukaryotic/archaea-type (IPR006649),Like-Sm ribonucleoprotein (LSM)-related domain (IPR010920);NIAS_FLcDNA=006-311-C12;Oryzabase=15638;TENOR=Os02t0102700-02
Chr02	irgsp1_rep	five_prime_UTR	137921	138075	.	-	.	Parent=Os02t0102700-02
Chr02	irgsp1_rep	CDS	137762	137920	.	-	0	Parent=Os02t0102700-02
Chr02	irgsp1_rep	CDS	137559	137678	.	-	0	Parent=Os02t0102700-02
Chr02	irgsp1_rep	CDS	137426	137482	.	-	0	Parent=Os02t0102700-02
Chr02	irgsp1_rep	CDS	135655	135717	.	-	0	Parent=Os02t0102700-02
Chr02	irgsp1_rep	three_prime_UTR	135302	135654	.	-	.	Parent=Os02t0102700-02
Chr02	irgsp1_rep	mRNA	146494	152581	.	+	.	ID=Os02t0102800-01;Name=Os02t0102800-01;Locus_id=Os02g0102800;Note=Pleckstrin homology-type domain containing protein.;Transcript_evidence=AK070607 (DDBJ%2C Best hit);ORF_evidence=Q5K2M9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Pleckstrin homology domain (IPR001849),Lipid-binding START (IPR002913),Domain of unknown function DUF1336 (IPR009769),Pleckstrin homology-type (IPR011993),START-like domain (IPR023393);NIAS_FLcDNA=J023059B18;Expression=AK070607;TENOR=Os02t0102800-01;KEGG=Os02t0102800-01
Chr02	irgsp1_rep	five_prime_UTR	146494	146663	.	+	.	Parent=Os02t0102800-01
Chr02	irgsp1_rep	CDS	146664	147002	.	+	0	Parent=Os02t0102800-01
Chr02	irgsp1_rep	CDS	147962	148036	.	+	0	Parent=Os02t0102800-01
Chr02	irgsp1_rep	CDS	148181	148234	.	+	0	Parent=Os02t0102800-01
Chr02	irgsp1_rep	CDS	148323	148388	.	+	0	Parent=Os02t0102800-01
Chr02	irgsp1_rep	CDS	148739	148836	.	+	0	Parent=Os02t0102800-01
Chr02	irgsp1_rep	CDS	148937	148992	.	+	1	Parent=Os02t0102800-01
Chr02	irgsp1_rep	CDS	149082	149197	.	+	2	Parent=Os02t0102800-01
Chr02	irgsp1_rep	CDS	149283	149324	.	+	0	Parent=Os02t0102800-01
Chr02	irgsp1_rep	CDS	149427	149527	.	+	0	Parent=Os02t0102800-01
Chr02	irgsp1_rep	CDS	149629	149724	.	+	1	Parent=Os02t0102800-01
Chr02	irgsp1_rep	CDS	149905	149969	.	+	1	Parent=Os02t0102800-01
Chr02	irgsp1_rep	CDS	150048	150119	.	+	2	Parent=Os02t0102800-01
Chr02	irgsp1_rep	CDS	150279	150434	.	+	2	Parent=Os02t0102800-01
Chr02	irgsp1_rep	CDS	150537	150772	.	+	2	Parent=Os02t0102800-01
Chr02	irgsp1_rep	CDS	150874	150904	.	+	0	Parent=Os02t0102800-01
Chr02	irgsp1_rep	CDS	151020	151165	.	+	2	Parent=Os02t0102800-01
Chr02	irgsp1_rep	CDS	151264	151365	.	+	0	Parent=Os02t0102800-01
Chr02	irgsp1_rep	CDS	151469	151513	.	+	0	Parent=Os02t0102800-01
Chr02	irgsp1_rep	CDS	151614	151754	.	+	0	Parent=Os02t0102800-01
Chr02	irgsp1_rep	CDS	151837	152214	.	+	0	Parent=Os02t0102800-01
Chr02	irgsp1_rep	three_prime_UTR	152215	152581	.	+	.	Parent=Os02t0102800-01
Chr02	irgsp1_rep	mRNA	149946	152456	.	+	.	ID=Os02t0102800-02;Name=Os02t0102800-02;Locus_id=Os02g0102800;Note=Similar to START domain-containing protein.;Transcript_evidence=AK070993 (DDBJ%2C Best hit);ORF_evidence=Q5K2M9 (UniProt);InterPro=Lipid-binding START (IPR002913),Domain of unknown function DUF1336 (IPR009769),START-like domain (IPR023393);NIAS_FLcDNA=J023078M16;Expression=AK070993;TENOR=Os02t0102800-02;KEGG=Os02t0102800-02
Chr02	irgsp1_rep	five_prime_UTR	149946	149947	.	+	.	Parent=Os02t0102800-02
Chr02	irgsp1_rep	CDS	149948	149969	.	+	0	Parent=Os02t0102800-02
Chr02	irgsp1_rep	CDS	150048	150119	.	+	2	Parent=Os02t0102800-02
Chr02	irgsp1_rep	CDS	150279	150434	.	+	2	Parent=Os02t0102800-02
Chr02	irgsp1_rep	CDS	150537	150772	.	+	2	Parent=Os02t0102800-02
Chr02	irgsp1_rep	CDS	150874	150904	.	+	0	Parent=Os02t0102800-02
Chr02	irgsp1_rep	CDS	151020	151165	.	+	2	Parent=Os02t0102800-02
Chr02	irgsp1_rep	CDS	151264	151365	.	+	0	Parent=Os02t0102800-02
Chr02	irgsp1_rep	CDS	151469	151513	.	+	0	Parent=Os02t0102800-02
Chr02	irgsp1_rep	CDS	151614	151754	.	+	0	Parent=Os02t0102800-02
Chr02	irgsp1_rep	CDS	151837	151875	.	+	0	Parent=Os02t0102800-02
Chr02	irgsp1_rep	CDS	152169	152189	.	+	0	Parent=Os02t0102800-02
Chr02	irgsp1_rep	three_prime_UTR	152190	152456	.	+	.	Parent=Os02t0102800-02
Chr02	irgsp1_rep	mRNA	152793	156036	.	+	.	ID=Os02t0102850-01;Name=Os02t0102850-01;Locus_id=Os02g0102850;Note=Conserved hypothetical protein.;Transcript_evidence=AK242995 (DDBJ%2C Best hit);ORF_evidence=NP_001172768.1 (RefSeq);NIAS_FLcDNA=J090095I02;TENOR=Os02t0102850-01;KEGG=Os02t0102850-01
Chr02	irgsp1_rep	five_prime_UTR	152793	153338	.	+	.	Parent=Os02t0102850-01
Chr02	irgsp1_rep	CDS	153339	153638	.	+	0	Parent=Os02t0102850-01
Chr02	irgsp1_rep	three_prime_UTR	153639	153745	.	+	.	Parent=Os02t0102850-01
Chr02	irgsp1_rep	three_prime_UTR	153992	154106	.	+	.	Parent=Os02t0102850-01
Chr02	irgsp1_rep	three_prime_UTR	154324	156036	.	+	.	Parent=Os02t0102850-01
Chr02	irgsp1_rep	mRNA	158662	163728	.	+	.	ID=Os02t0102900-01;Name=Os02t0102900-01;Locus_id=Os02g0102900;Oryzabase Gene Symbol Synonym(s)=OsCPn60beta2%2C OsCPn60b2;Oryzabase Gene Name Synonym(s)=chaperonin 60 beta subunit 2%2C chaperonin 62.5K beta-chain;Note=Similar to RuBisCO subunit binding-protein beta subunit%2C chloroplast (60 kDa chaperonin beta subunit) (CPN-60 beta) (Fragment).;Transcript_evidence=AK070603 (DDBJ%2C Best hit),AK101537 (DDBJ%2C Best hit);ORF_evidence=B6THN2 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: protein refolding (GO:0042026),Biological Process: cellular protein metabolic process (GO:0044267),Cellular Component: cytoplasm (GO:0005737),Molecular Function: ATP binding (GO:0005524);InterPro=Chaperonin Cpn60 (IPR001844),Chaperonin Cpn60/TCP-1 (IPR002423),Chaperonin Cpn60%2C conserved site (IPR018370);NIAS_FLcDNA=J023059D06,J033048E22;Oryzabase=14351;TENOR=Os02t0102900-01
Chr02	irgsp1_rep	five_prime_UTR	158662	158770	.	+	.	Parent=Os02t0102900-01
Chr02	irgsp1_rep	five_prime_UTR	159590	159594	.	+	.	Parent=Os02t0102900-01
Chr02	irgsp1_rep	CDS	159595	159801	.	+	0	Parent=Os02t0102900-01
Chr02	irgsp1_rep	CDS	159892	160017	.	+	0	Parent=Os02t0102900-01
Chr02	irgsp1_rep	CDS	160201	160338	.	+	0	Parent=Os02t0102900-01
Chr02	irgsp1_rep	CDS	160431	160526	.	+	0	Parent=Os02t0102900-01
Chr02	irgsp1_rep	CDS	160958	161200	.	+	0	Parent=Os02t0102900-01
Chr02	irgsp1_rep	CDS	161303	161537	.	+	0	Parent=Os02t0102900-01
Chr02	irgsp1_rep	CDS	161612	161781	.	+	2	Parent=Os02t0102900-01
Chr02	irgsp1_rep	CDS	161975	162052	.	+	0	Parent=Os02t0102900-01
Chr02	irgsp1_rep	CDS	162156	162227	.	+	0	Parent=Os02t0102900-01
Chr02	irgsp1_rep	CDS	162345	162449	.	+	0	Parent=Os02t0102900-01
Chr02	irgsp1_rep	CDS	162555	162647	.	+	0	Parent=Os02t0102900-01
Chr02	irgsp1_rep	CDS	162737	162829	.	+	0	Parent=Os02t0102900-01
Chr02	irgsp1_rep	CDS	163109	163235	.	+	0	Parent=Os02t0102900-01
Chr02	irgsp1_rep	CDS	163317	163330	.	+	2	Parent=Os02t0102900-01
Chr02	irgsp1_rep	three_prime_UTR	163331	163728	.	+	.	Parent=Os02t0102900-01
Chr02	irgsp1_rep	mRNA	159579	163226	.	-	.	ID=Os02t0102950-00;Name=Os02t0102950-00;Locus_id=Os02g0102950;Note=Hypothetical protein.;Transcript_evidence=tplb0058a16 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0102950-00
Chr02	irgsp1_rep	five_prime_UTR	163107	163226	.	-	.	Parent=Os02t0102950-00
Chr02	irgsp1_rep	five_prime_UTR	162723	162827	.	-	.	Parent=Os02t0102950-00
Chr02	irgsp1_rep	five_prime_UTR	162561	162639	.	-	.	Parent=Os02t0102950-00
Chr02	irgsp1_rep	five_prime_UTR	162419	162455	.	-	.	Parent=Os02t0102950-00
Chr02	irgsp1_rep	CDS	162343	162418	.	-	0	Parent=Os02t0102950-00
Chr02	irgsp1_rep	CDS	162145	162225	.	-	2	Parent=Os02t0102950-00
Chr02	irgsp1_rep	CDS	161985	162041	.	-	2	Parent=Os02t0102950-00
Chr02	irgsp1_rep	CDS	161704	161783	.	-	2	Parent=Os02t0102950-00
Chr02	irgsp1_rep	three_prime_UTR	161584	161703	.	-	.	Parent=Os02t0102950-00
Chr02	irgsp1_rep	three_prime_UTR	161318	161509	.	-	.	Parent=Os02t0102950-00
Chr02	irgsp1_rep	three_prime_UTR	160974	161212	.	-	.	Parent=Os02t0102950-00
Chr02	irgsp1_rep	three_prime_UTR	160429	160538	.	-	.	Parent=Os02t0102950-00
Chr02	irgsp1_rep	three_prime_UTR	160199	160336	.	-	.	Parent=Os02t0102950-00
Chr02	irgsp1_rep	three_prime_UTR	159890	160014	.	-	.	Parent=Os02t0102950-00
Chr02	irgsp1_rep	three_prime_UTR	159579	159795	.	-	.	Parent=Os02t0102950-00
Chr02	irgsp1_rep	mRNA	163662	164372	.	-	.	ID=Os02t0103000-01;Name=Os02t0103000-01;Locus_id=Os02g0103000;Note=Conserved hypothetical protein.;Transcript_evidence=AK110906 (DDBJ%2C Best hit);ORF_evidence=A2WZS8 (UniProt);NIAS_FLcDNA=002-173-B08;Expression=AK110906;TENOR=Os02t0103000-01;KEGG=Os02t0103000-01
Chr02	irgsp1_rep	five_prime_UTR	164330	164372	.	-	.	Parent=Os02t0103000-01
Chr02	irgsp1_rep	CDS	163859	164329	.	-	0	Parent=Os02t0103000-01
Chr02	irgsp1_rep	three_prime_UTR	163662	163858	.	-	.	Parent=Os02t0103000-01
Chr02	irgsp1_rep	mRNA	163892	174036	.	+	.	ID=Os02t0103100-01;Name=Os02t0103100-01;Locus_id=Os02g0103100;Note=Hypothetical protein.;Transcript_evidence=AK071040 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023079H22;TENOR=Os02t0103100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	163892	164311	.	+	0	Parent=Os02t0103100-01
Chr02	irgsp1_rep	CDS	172263	172283	.	+	0	Parent=Os02t0103100-01
Chr02	irgsp1_rep	three_prime_UTR	172284	174036	.	+	.	Parent=Os02t0103100-01
Chr02	irgsp1_rep	mRNA	165493	166232	.	-	.	ID=Os02t0103200-00;Name=Os02t0103200-00;Locus_id=Os02g0103200;Note=Hypothetical conserved gene.;Transcript_evidence=CT835329 (DDBJ%2C Best hit);ORF_evidence=A3A265 (UniProt);GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);TENOR=Os02t0103200-00;KEGG=Os02t0103200-00
Chr02	irgsp1_rep	five_prime_UTR	166186	166232	.	-	.	Parent=Os02t0103200-00
Chr02	irgsp1_rep	CDS	165640	166185	.	-	0	Parent=Os02t0103200-00
Chr02	irgsp1_rep	three_prime_UTR	165493	165639	.	-	.	Parent=Os02t0103200-00
Chr02	irgsp1_rep	mRNA	168443	169528	.	-	.	ID=Os02t0103300-01;Name=Os02t0103300-01;Locus_id=Os02g0103300;Note=Pectinesterase inhibitor domain containing protein.;Transcript_evidence=AK069788 (DDBJ%2C Best hit);ORF_evidence=B6T2U1 (UniProt);GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);NIAS_FLcDNA=J023030J21;Expression=AK069788;TENOR=Os02t0103300-01;KEGG=Os02t0103300-01
Chr02	irgsp1_rep	five_prime_UTR	169311	169528	.	-	.	Parent=Os02t0103300-01
Chr02	irgsp1_rep	CDS	168684	169310	.	-	0	Parent=Os02t0103300-01
Chr02	irgsp1_rep	three_prime_UTR	168443	168683	.	-	.	Parent=Os02t0103300-01
Chr02	irgsp1_rep	mRNA	172243	173824	.	-	.	ID=Os02t0103500-00;Name=Os02t0103500-00;Locus_id=Os02g0103500;Note=Similar to nodulin protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001151682.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);TENOR=Os02t0103500-00;KEGG=Os02t0103500-00
Chr02	irgsp1_rep	CDS	173640	173824	.	-	0	Parent=Os02t0103500-00
Chr02	irgsp1_rep	CDS	173482	173544	.	-	1	Parent=Os02t0103500-00
Chr02	irgsp1_rep	CDS	172801	173341	.	-	1	Parent=Os02t0103500-00
Chr02	irgsp1_rep	CDS	172550	172701	.	-	0	Parent=Os02t0103500-00
Chr02	irgsp1_rep	CDS	172243	172435	.	-	1	Parent=Os02t0103500-00
Chr02	irgsp1_rep	mRNA	175818	179370	.	-	.	ID=Os02t0103600-01;Name=Os02t0103600-01;Locus_id=Os02g0103600;Note=Protein of unknown function DUF6%2C transmembrane domain containing protein.;Transcript_evidence=AK070945 (DDBJ%2C Best hit);ORF_evidence=NP_001151682.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=J023072N08;Expression=AK070945;TENOR=Os02t0103600-01;KEGG=Os02t0103600-01
Chr02	irgsp1_rep	five_prime_UTR	179146	179370	.	-	.	Parent=Os02t0103600-01
Chr02	irgsp1_rep	CDS	178964	179145	.	-	0	Parent=Os02t0103600-01
Chr02	irgsp1_rep	CDS	178260	178322	.	-	1	Parent=Os02t0103600-01
Chr02	irgsp1_rep	CDS	178010	178126	.	-	1	Parent=Os02t0103600-01
Chr02	irgsp1_rep	CDS	177166	177577	.	-	1	Parent=Os02t0103600-01
Chr02	irgsp1_rep	CDS	176495	176646	.	-	0	Parent=Os02t0103600-01
Chr02	irgsp1_rep	CDS	176002	176137	.	-	1	Parent=Os02t0103600-01
Chr02	irgsp1_rep	three_prime_UTR	175818	176001	.	-	.	Parent=Os02t0103600-01
Chr02	irgsp1_rep	mRNA	180352	183440	.	-	.	ID=Os02t0103700-01;Name=Os02t0103700-01;Locus_id=Os02g0103700;Note=Similar to 60S ribosomal protein L9 (Gibberellin-regulated protein GA).;Transcript_evidence=AK102186 (DDBJ%2C Best hit),AK062502 (DDBJ%2C Best hit);ORF_evidence=A2Z2J3 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735),Molecular Function: rRNA binding (GO:0019843);InterPro=Ribosomal protein L6 (IPR000702),Ribosomal protein L6%2C conserved site-2 (IPR002359),Ribosomal protein L6%2C alpha-beta domain (IPR020040);NIAS_FLcDNA=J033086N17,001-104-A12;Expression=AK102186;TENOR=Os02t0103700-01;KEGG=Os02t0103700-01
Chr02	irgsp1_rep	five_prime_UTR	183356	183440	.	-	.	Parent=Os02t0103700-01
Chr02	irgsp1_rep	CDS	182987	183355	.	-	0	Parent=Os02t0103700-01
Chr02	irgsp1_rep	CDS	182394	182516	.	-	0	Parent=Os02t0103700-01
Chr02	irgsp1_rep	CDS	180601	180687	.	-	0	Parent=Os02t0103700-01
Chr02	irgsp1_rep	three_prime_UTR	180352	180600	.	-	.	Parent=Os02t0103700-01
Chr02	irgsp1_rep	mRNA	183655	185325	.	-	.	ID=Os02t0103800-01;Name=Os02t0103800-01;Locus_id=Os02g0103800;RAP-DB Gene Symbol Synonym(s)=OsLFNR1%2C LFNR1;RAP-DB Gene Name Synonym(s)=leaf-type ferredoxin-NADP+-oxidoreductase 1%2C leaf-type FNR 1%2C Fd NADP+ oxidoreductase 1;Oryzabase Gene Symbol Synonym(s)=OsLFNR1%2C LFNR1%2C LFNR2%2C Os-LFNR2%2C OsLFNR2%2C FNR%2C PetH-2;Oryzabase Gene Name Synonym(s)=leaf-type ferredoxin-NADP+-oxidoreductase 1%2C leaf-type FNR 1%2C Fd NADP+ oxidoreductase 1%2C ferredoxin-NADP reductase;Note=Leaf-type ferredoxin-NADP+-oxidoreductase%2C Regulation of electron partitioning in the chloroplast;Transcript_evidence=AK065309;ORF_evidence=Q6ZFJ3;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Ferredoxin--NADP reductase (IPR015701),Riboflavin synthase-like beta-barrel (IPR017938),Ferredoxin reductase-type FAD-binding domain (IPR017927),Oxidoreductase FAD/NAD(P)-binding (IPR001433),Flavoprotein pyridine nucleotide cytoChrome reductase (IPR001709);NIAS_FLcDNA=J013002O13;Manual Curation=April 21%2C 2016;Literature_PMID=21734114;Oryzabase=9584;TENOR=Os02t0103800-01
Chr02	irgsp1_rep	five_prime_UTR	185184	185325	.	-	.	Parent=Os02t0103800-01
Chr02	irgsp1_rep	CDS	184698	185183	.	-	0	Parent=Os02t0103800-01
Chr02	irgsp1_rep	CDS	184526	184604	.	-	0	Parent=Os02t0103800-01
Chr02	irgsp1_rep	CDS	183986	184453	.	-	2	Parent=Os02t0103800-01
Chr02	irgsp1_rep	CDS	183836	183903	.	-	2	Parent=Os02t0103800-01
Chr02	irgsp1_rep	three_prime_UTR	183655	183835	.	-	.	Parent=Os02t0103800-01
Chr02	irgsp1_rep	mRNA	183609	185249	.	-	.	ID=Os02t0103800-02;Name=Os02t0103800-02;Locus_id=Os02g0103800;Oryzabase Gene Symbol Synonym(s)=OsLFNR1%2C LFNR1%2C LFNR2%2C Os-LFNR2%2C OsLFNR2%2C FNR%2C PetH-2;Oryzabase Gene Name Synonym(s)=leaf-type ferredoxin-NADP+-oxidoreductase 1%2C leaf-type FNR 1%2C Fd NADP+ oxidoreductase 1%2C ferredoxin-NADP reductase;Note=Similar to Ferredoxin NADP+ reductase (EC 1.18.1.2) (Fragment).;Transcript_evidence=AK106213 (DDBJ%2C Best hit);ORF_evidence=Q8RVZ8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: thylakoid membrane (GO:0042651),Molecular Function: ferredoxin-NADP+ reductase activity (GO:0004324),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=Oxidoreductase FAD/NAD(P)-binding (IPR001433),Flavoprotein pyridine nucleotide cytoChrome reductase (IPR001709),Oxidoreductase%2C FAD-binding domain (IPR008333),Ferredoxin--NADP reductase (IPR012146),Ferredoxin Reductase (IPR015701),Ferredoxin reductase-type FAD-binding domain (IPR017927),Riboflavin synthase-like beta-barrel (IPR017938);NIAS_FLcDNA=001-208-G10;Oryzabase=9584;Expression=AK106213;TENOR=Os02t0103800-02;KEGG=Os02t0103800-02 (EC:1.18.1.2)
Chr02	irgsp1_rep	five_prime_UTR	185184	185249	.	-	.	Parent=Os02t0103800-02
Chr02	irgsp1_rep	CDS	184698	185183	.	-	0	Parent=Os02t0103800-02
Chr02	irgsp1_rep	CDS	184526	184604	.	-	0	Parent=Os02t0103800-02
Chr02	irgsp1_rep	CDS	184199	184453	.	-	2	Parent=Os02t0103800-02
Chr02	irgsp1_rep	CDS	183986	184150	.	-	2	Parent=Os02t0103800-02
Chr02	irgsp1_rep	CDS	183836	183903	.	-	2	Parent=Os02t0103800-02
Chr02	irgsp1_rep	three_prime_UTR	183609	183835	.	-	.	Parent=Os02t0103800-02
Chr02	irgsp1_rep	mRNA	183661	185222	.	-	.	ID=Os02t0103800-03;Name=Os02t0103800-03;Locus_id=Os02g0103800;Oryzabase Gene Symbol Synonym(s)=OsLFNR1%2C LFNR1%2C LFNR2%2C Os-LFNR2%2C OsLFNR2%2C FNR%2C PetH-2;Oryzabase Gene Name Synonym(s)=leaf-type ferredoxin-NADP+-oxidoreductase 1%2C leaf-type FNR 1%2C Fd NADP+ oxidoreductase 1%2C ferredoxin-NADP reductase;Note=Similar to Ferredoxin--NADP reductase.;Transcript_evidence=AK061774 (DDBJ%2C Best hit);ORF_evidence=Q8RVZ8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: thylakoid membrane (GO:0042651),Molecular Function: ferredoxin-NADP+ reductase activity (GO:0004324),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=Oxidoreductase FAD/NAD(P)-binding (IPR001433),Flavoprotein pyridine nucleotide cytoChrome reductase (IPR001709),Oxidoreductase%2C FAD-binding domain (IPR008333),Ferredoxin--NADP reductase (IPR012146),Ferredoxin Reductase (IPR015701),Ferredoxin reductase-type FAD-binding domain (IPR017927),Riboflavin synthase-like beta-barrel (IPR017938);NIAS_FLcDNA=001-039-D02;Oryzabase=9584;TENOR=Os02t0103800-03
Chr02	irgsp1_rep	five_prime_UTR	185184	185222	.	-	.	Parent=Os02t0103800-03
Chr02	irgsp1_rep	CDS	184698	185183	.	-	0	Parent=Os02t0103800-03
Chr02	irgsp1_rep	CDS	184526	184604	.	-	0	Parent=Os02t0103800-03
Chr02	irgsp1_rep	CDS	183986	184453	.	-	2	Parent=Os02t0103800-03
Chr02	irgsp1_rep	CDS	183836	183903	.	-	2	Parent=Os02t0103800-03
Chr02	irgsp1_rep	three_prime_UTR	183661	183835	.	-	.	Parent=Os02t0103800-03
Chr02	irgsp1_rep	mRNA	183835	185184	.	+	.	ID=Os02t0103850-00;Name=Os02t0103850-00;Locus_id=Os02g0103850;Note=Hypothetical protein.;Transcript_evidence=tplb0050d18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0103850-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	183835	183835	.	+	.	Parent=Os02t0103850-00
Chr02	irgsp1_rep	CDS	183836	183895	.	+	0	Parent=Os02t0103850-00
Chr02	irgsp1_rep	CDS	183978	184448	.	+	0	Parent=Os02t0103850-00
Chr02	irgsp1_rep	CDS	184521	184601	.	+	0	Parent=Os02t0103850-00
Chr02	irgsp1_rep	CDS	184695	185184	.	+	0	Parent=Os02t0103850-00
Chr02	irgsp1_rep	mRNA	187508	192121	.	-	.	ID=Os02t0103900-01;Name=Os02t0103900-01;Locus_id=Os02g0103900;Note=U3 small nucleolar RNA-associated protein 6 domain containing protein.;Transcript_evidence=AK070601 (DDBJ%2C Best hit);ORF_evidence=B8AGW0 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Cellular Component: intracellular (GO:0005622),Molecular Function: binding (GO:0005488);InterPro=RNA-processing protein%2C HAT helix (IPR003107),Tetratricopeptide-like helical (IPR011990),U3 small nucleolar RNA-associated protein 6 (IPR013949);NIAS_FLcDNA=J023057B08;Expression=AK070601;TENOR=Os02t0103900-01;KEGG=Os02t0103900-01
Chr02	irgsp1_rep	five_prime_UTR	192042	192121	.	-	.	Parent=Os02t0103900-01
Chr02	irgsp1_rep	CDS	191566	192041	.	-	0	Parent=Os02t0103900-01
Chr02	irgsp1_rep	CDS	189557	190211	.	-	1	Parent=Os02t0103900-01
Chr02	irgsp1_rep	CDS	188917	189399	.	-	0	Parent=Os02t0103900-01
Chr02	irgsp1_rep	CDS	188468	188640	.	-	0	Parent=Os02t0103900-01
Chr02	irgsp1_rep	CDS	187996	188179	.	-	1	Parent=Os02t0103900-01
Chr02	irgsp1_rep	CDS	187798	187887	.	-	0	Parent=Os02t0103900-01
Chr02	irgsp1_rep	three_prime_UTR	187508	187797	.	-	.	Parent=Os02t0103900-01
Chr02	irgsp1_rep	mRNA	187520	189391	.	-	.	ID=Os02t0103900-02;Name=Os02t0103900-02;Locus_id=Os02g0103900;Note=Hypothetical conserved gene.;Transcript_evidence=AK059499 (DDBJ%2C Best hit);ORF_evidence=A3A269 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Cellular Component: intracellular (GO:0005622),Molecular Function: binding (GO:0005488);InterPro=RNA-processing protein%2C HAT helix (IPR003107),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-028-H12;Expression=AK059499;TENOR=Os02t0103900-02;KEGG=Os02t0103900-02
Chr02	irgsp1_rep	five_prime_UTR	189391	189391	.	-	.	Parent=Os02t0103900-02
Chr02	irgsp1_rep	CDS	188917	189390	.	-	0	Parent=Os02t0103900-02
Chr02	irgsp1_rep	CDS	188468	188640	.	-	0	Parent=Os02t0103900-02
Chr02	irgsp1_rep	CDS	187996	188179	.	-	1	Parent=Os02t0103900-02
Chr02	irgsp1_rep	CDS	187798	187887	.	-	0	Parent=Os02t0103900-02
Chr02	irgsp1_rep	three_prime_UTR	187520	187797	.	-	.	Parent=Os02t0103900-02
Chr02	irgsp1_rep	mRNA	199223	204482	.	+	.	ID=Os02t0104100-00;Name=Os02t0104100-00;Locus_id=Os02g0104100;Note=Similar to MADS-box transcription factor TaAGL18.;Transcript_evidence=FP098509 (DDBJ);ORF_evidence=Q1G190 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box (IPR002100),Transcription factor%2C K-box (IPR002487);TENOR=Os02t0104100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	199223	199223	.	+	.	Parent=Os02t0104100-00
Chr02	irgsp1_rep	CDS	199224	199531	.	+	0	Parent=Os02t0104100-00
Chr02	irgsp1_rep	CDS	202806	202887	.	+	1	Parent=Os02t0104100-00
Chr02	irgsp1_rep	CDS	203397	203458	.	+	0	Parent=Os02t0104100-00
Chr02	irgsp1_rep	CDS	203566	203665	.	+	1	Parent=Os02t0104100-00
Chr02	irgsp1_rep	CDS	203875	203916	.	+	0	Parent=Os02t0104100-00
Chr02	irgsp1_rep	CDS	204264	204482	.	+	0	Parent=Os02t0104100-00
Chr02	irgsp1_rep	mRNA	204578	204914	.	+	.	ID=Os02t0104150-00;Name=Os02t0104150-00;Locus_id=Os02g0104150;Note=Non-protein coding transcript.;Transcript_evidence=CT835343 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os02t0104150-00
Chr02	irgsp1_rep	exon	204578	204914	.	+	.	Parent=Os02t0104150-00
Chr02	irgsp1_rep	mRNA	205432	207453	.	+	.	ID=Os02t0104200-01;Name=Os02t0104200-01;Locus_id=Os02g0104200;CGSNL Gene Symbol=MADS60;CGSNL Gene Name=MADS BOX GENE 60;Oryzabase Gene Symbol Synonym(s)=OsMADS60;Oryzabase Gene Name Synonym(s)=MADS box gene60%2C MADS box gene 60%2C MADS-box transcription factor 60;Note=Conserved hypothetical protein.;Transcript_evidence=AK060830 (DDBJ%2C Best hit);ORF_evidence=B8AGW2 (UniProt);NIAS_FLcDNA=001-034-C03;Oryzabase=12298;Expression=AK060830;TENOR=Os02t0104200-01;KEGG=Os02t0104200-01
Chr02	irgsp1_rep	five_prime_UTR	205432	205621	.	+	.	Parent=Os02t0104200-01
Chr02	irgsp1_rep	five_prime_UTR	206179	206549	.	+	.	Parent=Os02t0104200-01
Chr02	irgsp1_rep	CDS	206550	207221	.	+	0	Parent=Os02t0104200-01
Chr02	irgsp1_rep	three_prime_UTR	207222	207453	.	+	.	Parent=Os02t0104200-01
Chr02	irgsp1_rep	mRNA	205458	207444	.	+	.	ID=Os02t0104200-02;Name=Os02t0104200-02;Locus_id=Os02g0104200;CGSNL Gene Symbol=MADS60;CGSNL Gene Name=MADS BOX GENE 60;Oryzabase Gene Symbol Synonym(s)=OsMADS60;Oryzabase Gene Name Synonym(s)=MADS box gene60%2C MADS box gene 60%2C MADS-box transcription factor 60;Note=Conserved hypothetical protein.;Transcript_evidence=AK121824 (DDBJ%2C Best hit);ORF_evidence=B8AGW2 (UniProt);NIAS_FLcDNA=J033099F22;Oryzabase=12298;Expression=AK121824;TENOR=Os02t0104200-02;KEGG=Os02t0104200-02
Chr02	irgsp1_rep	five_prime_UTR	205458	205621	.	+	.	Parent=Os02t0104200-02
Chr02	irgsp1_rep	five_prime_UTR	206179	206549	.	+	.	Parent=Os02t0104200-02
Chr02	irgsp1_rep	CDS	206550	207221	.	+	0	Parent=Os02t0104200-02
Chr02	irgsp1_rep	three_prime_UTR	207222	207444	.	+	.	Parent=Os02t0104200-02
Chr02	irgsp1_rep	mRNA	219736	221602	.	-	.	ID=Os02t0104500-01;Name=Os02t0104500-01;Locus_id=Os02g0104500;CGSNL Gene Symbol=MSL08;CGSNL Gene Name=MYB/SANT-LIKE 8;Oryzabase Gene Symbol Synonym(s)=OsMSL08%2C MSL8;Oryzabase Gene Name Synonym(s)=Myb/SANT-LIKE 8;Note=MYB-like domain containing protein.;Transcript_evidence=AK120063 (DDBJ%2C Best hit);ORF_evidence=A3A272 (UniProt);InterPro=MYB-like (IPR017877);NIAS_FLcDNA=J013001K22;Oryzabase=22950;TENOR=Os02t0104500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	221479	221602	.	-	.	Parent=Os02t0104500-01
Chr02	irgsp1_rep	CDS	220036	221478	.	-	0	Parent=Os02t0104500-01
Chr02	irgsp1_rep	three_prime_UTR	219736	220035	.	-	.	Parent=Os02t0104500-01
Chr02	irgsp1_rep	mRNA	261348	265491	.	+	.	ID=Os02t0104700-01;Name=Os02t0104700-01;Locus_id=Os02g0104700;RAP-DB Gene Symbol Synonym(s)=NOA1%2C OsNOA1;RAP-DB Gene Name Synonym(s)=Nitric Oxide-Associated1;Oryzabase Gene Symbol Synonym(s)=NOA1%2C OsNOA1;Oryzabase Gene Name Synonym(s)=Nitric Oxide-Associated1%2C Nitric Oxide Associated protein 1;Note=Nitric oxide synthase%2C Chloroplast ribosome biogenesis and/or translation%2C Regulation of biosynthesis of chloroplast proteins at lower temperature;Transcript_evidence=Inferred from literature;ORF_evidence=Q6YPG5 (UniProt);GO=Molecular Function: GTP binding (GO:0005525);InterPro=GTP binding domain (IPR006073);Manual Curation=March 23%2C 2018;Literature_PMID=29548275,20456051;Oryzabase=9403;TENOR=Os02t0104700-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	261348	261404	.	+	.	Parent=Os02t0104700-01
Chr02	irgsp1_rep	CDS	261405	261779	.	+	0	Parent=Os02t0104700-01
Chr02	irgsp1_rep	CDS	261880	262065	.	+	0	Parent=Os02t0104700-01
Chr02	irgsp1_rep	CDS	262185	262271	.	+	0	Parent=Os02t0104700-01
Chr02	irgsp1_rep	CDS	262341	262420	.	+	0	Parent=Os02t0104700-01
Chr02	irgsp1_rep	CDS	262518	262599	.	+	1	Parent=Os02t0104700-01
Chr02	irgsp1_rep	CDS	262794	262814	.	+	0	Parent=Os02t0104700-01
Chr02	irgsp1_rep	CDS	263204	263249	.	+	0	Parent=Os02t0104700-01
Chr02	irgsp1_rep	CDS	263365	263483	.	+	2	Parent=Os02t0104700-01
Chr02	irgsp1_rep	CDS	263685	263798	.	+	0	Parent=Os02t0104700-01
Chr02	irgsp1_rep	CDS	263885	263959	.	+	0	Parent=Os02t0104700-01
Chr02	irgsp1_rep	CDS	264068	264157	.	+	0	Parent=Os02t0104700-01
Chr02	irgsp1_rep	CDS	264604	264713	.	+	0	Parent=Os02t0104700-01
Chr02	irgsp1_rep	CDS	264902	265160	.	+	1	Parent=Os02t0104700-01
Chr02	irgsp1_rep	three_prime_UTR	265161	265491	.	+	.	Parent=Os02t0104700-01
Chr02	irgsp1_rep	mRNA	261338	265329	.	+	.	ID=Os02t0104700-02;Name=Os02t0104700-02;Locus_id=Os02g0104700;Oryzabase Gene Symbol Synonym(s)=NOA1%2C OsNOA1;Oryzabase Gene Name Synonym(s)=Nitric Oxide-Associated1%2C Nitric Oxide Associated protein 1;Note=Similar to Nitric oxide associated 1.;Transcript_evidence=AK288268 (DDBJ%2C Best hit);ORF_evidence=A8R0L3 (UniProt);InterPro=GTP-binding protein%2C riobosome biogenesis%2C YqeH (IPR019988);NIAS_FLcDNA=J090016N14;Oryzabase=9403;TENOR=Os02t0104700-02
Chr02	irgsp1_rep	five_prime_UTR	261338	261404	.	+	.	Parent=Os02t0104700-02
Chr02	irgsp1_rep	CDS	261405	261779	.	+	0	Parent=Os02t0104700-02
Chr02	irgsp1_rep	CDS	261880	262065	.	+	0	Parent=Os02t0104700-02
Chr02	irgsp1_rep	CDS	262185	262271	.	+	0	Parent=Os02t0104700-02
Chr02	irgsp1_rep	CDS	262341	262420	.	+	0	Parent=Os02t0104700-02
Chr02	irgsp1_rep	CDS	262518	262644	.	+	1	Parent=Os02t0104700-02
Chr02	irgsp1_rep	three_prime_UTR	262645	263483	.	+	.	Parent=Os02t0104700-02
Chr02	irgsp1_rep	three_prime_UTR	263685	263798	.	+	.	Parent=Os02t0104700-02
Chr02	irgsp1_rep	three_prime_UTR	263898	263959	.	+	.	Parent=Os02t0104700-02
Chr02	irgsp1_rep	three_prime_UTR	264068	264713	.	+	.	Parent=Os02t0104700-02
Chr02	irgsp1_rep	three_prime_UTR	264902	265329	.	+	.	Parent=Os02t0104700-02
Chr02	irgsp1_rep	mRNA	265795	268839	.	+	.	ID=Os02t0104800-01;Name=Os02t0104800-01;Locus_id=Os02g0104800;Note=Uncharacterised conserved protein UCP022280 domain containing protein.;Transcript_evidence=AK070860 (DDBJ%2C Best hit);ORF_evidence=B8AGW4 (UniProt);InterPro=Uncharacterised conserved protein UCP022280 (IPR016803);NIAS_FLcDNA=J023067K03;Expression=AK070860;TENOR=Os02t0104800-01;KEGG=Os02t0104800-01
Chr02	irgsp1_rep	five_prime_UTR	265795	265846	.	+	.	Parent=Os02t0104800-01
Chr02	irgsp1_rep	CDS	265847	266137	.	+	0	Parent=Os02t0104800-01
Chr02	irgsp1_rep	CDS	266241	266307	.	+	0	Parent=Os02t0104800-01
Chr02	irgsp1_rep	CDS	266489	266566	.	+	2	Parent=Os02t0104800-01
Chr02	irgsp1_rep	CDS	267141	267193	.	+	2	Parent=Os02t0104800-01
Chr02	irgsp1_rep	CDS	267579	267662	.	+	0	Parent=Os02t0104800-01
Chr02	irgsp1_rep	CDS	267762	267810	.	+	0	Parent=Os02t0104800-01
Chr02	irgsp1_rep	CDS	267898	267966	.	+	2	Parent=Os02t0104800-01
Chr02	irgsp1_rep	CDS	268073	268131	.	+	2	Parent=Os02t0104800-01
Chr02	irgsp1_rep	CDS	268467	268556	.	+	0	Parent=Os02t0104800-01
Chr02	irgsp1_rep	three_prime_UTR	268557	268839	.	+	.	Parent=Os02t0104800-01
Chr02	irgsp1_rep	mRNA	274455	277232	.	+	.	ID=Os02t0105000-01;Name=Os02t0105000-01;Locus_id=Os02g0105000;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK060064 (DDBJ%2C Best hit);ORF_evidence=NP_001146882.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=006-305-H01;Expression=AK060064;TENOR=Os02t0105000-01;KEGG=Os02t0105000-01
Chr02	irgsp1_rep	five_prime_UTR	274455	274709	.	+	.	Parent=Os02t0105000-01
Chr02	irgsp1_rep	CDS	274710	274762	.	+	0	Parent=Os02t0105000-01
Chr02	irgsp1_rep	CDS	274834	274917	.	+	1	Parent=Os02t0105000-01
Chr02	irgsp1_rep	CDS	274990	275070	.	+	1	Parent=Os02t0105000-01
Chr02	irgsp1_rep	CDS	275366	275505	.	+	1	Parent=Os02t0105000-01
Chr02	irgsp1_rep	CDS	275655	275748	.	+	2	Parent=Os02t0105000-01
Chr02	irgsp1_rep	CDS	276393	276462	.	+	1	Parent=Os02t0105000-01
Chr02	irgsp1_rep	CDS	276783	276845	.	+	0	Parent=Os02t0105000-01
Chr02	irgsp1_rep	CDS	276935	277012	.	+	0	Parent=Os02t0105000-01
Chr02	irgsp1_rep	three_prime_UTR	277013	277232	.	+	.	Parent=Os02t0105000-01
Chr02	irgsp1_rep	mRNA	274460	277289	.	+	.	ID=Os02t0105000-02;Name=Os02t0105000-02;Locus_id=Os02g0105000;Note=Similar to nucleic acid binding protein.;Transcript_evidence=AK103456 (DDBJ%2C Best hit);ORF_evidence=NP_001146882.1 (RefSeq);NIAS_FLcDNA=J033129K17;TENOR=Os02t0105000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	274460	274762	.	+	.	Parent=Os02t0105000-02
Chr02	irgsp1_rep	five_prime_UTR	274834	275273	.	+	.	Parent=Os02t0105000-02
Chr02	irgsp1_rep	CDS	275274	275573	.	+	0	Parent=Os02t0105000-02
Chr02	irgsp1_rep	three_prime_UTR	275574	276845	.	+	.	Parent=Os02t0105000-02
Chr02	irgsp1_rep	three_prime_UTR	276935	277289	.	+	.	Parent=Os02t0105000-02
Chr02	irgsp1_rep	mRNA	279365	286448	.	+	.	ID=Os02t0105100-01;Name=Os02t0105100-01;Locus_id=Os02g0105100;Note=Sec16%2C central conserved domain domain containing protein.;Transcript_evidence=AK122164 (DDBJ%2C Best hit);ORF_evidence=B9F1Q3 (UniProt);InterPro=Sec16%2C central conserved domain (IPR024340);NIAS_FLcDNA=J033147K10;TENOR=Os02t0105100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	279365	279582	.	+	.	Parent=Os02t0105100-01
Chr02	irgsp1_rep	CDS	279583	281622	.	+	0	Parent=Os02t0105100-01
Chr02	irgsp1_rep	CDS	281724	282047	.	+	0	Parent=Os02t0105100-01
Chr02	irgsp1_rep	CDS	282315	282473	.	+	0	Parent=Os02t0105100-01
Chr02	irgsp1_rep	three_prime_UTR	282474	282648	.	+	.	Parent=Os02t0105100-01
Chr02	irgsp1_rep	three_prime_UTR	282768	282923	.	+	.	Parent=Os02t0105100-01
Chr02	irgsp1_rep	three_prime_UTR	283224	283349	.	+	.	Parent=Os02t0105100-01
Chr02	irgsp1_rep	three_prime_UTR	283426	283560	.	+	.	Parent=Os02t0105100-01
Chr02	irgsp1_rep	three_prime_UTR	283815	283942	.	+	.	Parent=Os02t0105100-01
Chr02	irgsp1_rep	three_prime_UTR	284037	284148	.	+	.	Parent=Os02t0105100-01
Chr02	irgsp1_rep	three_prime_UTR	284233	284547	.	+	.	Parent=Os02t0105100-01
Chr02	irgsp1_rep	three_prime_UTR	284655	284771	.	+	.	Parent=Os02t0105100-01
Chr02	irgsp1_rep	three_prime_UTR	284871	285166	.	+	.	Parent=Os02t0105100-01
Chr02	irgsp1_rep	three_prime_UTR	285252	286448	.	+	.	Parent=Os02t0105100-01
Chr02	irgsp1_rep	mRNA	284510	286448	.	+	.	ID=Os02t0105100-02;Name=Os02t0105100-02;Locus_id=Os02g0105100;Note=Hypothetical conserved gene.;Transcript_evidence=AK106550 (DDBJ%2C Best hit);ORF_evidence=B9F1Q3 (UniProt);NIAS_FLcDNA=002-108-G03;Expression=AK106550;TENOR=Os02t0105100-02;KEGG=Os02t0105100-02
Chr02	irgsp1_rep	five_prime_UTR	284510	284511	.	+	.	Parent=Os02t0105100-02
Chr02	irgsp1_rep	CDS	284512	284547	.	+	0	Parent=Os02t0105100-02
Chr02	irgsp1_rep	CDS	284655	284771	.	+	0	Parent=Os02t0105100-02
Chr02	irgsp1_rep	CDS	284871	285166	.	+	0	Parent=Os02t0105100-02
Chr02	irgsp1_rep	CDS	285252	285795	.	+	1	Parent=Os02t0105100-02
Chr02	irgsp1_rep	three_prime_UTR	285796	286448	.	+	.	Parent=Os02t0105100-02
Chr02	irgsp1_rep	mRNA	287571	293885	.	+	.	ID=Os02t0105200-01;Name=Os02t0105200-01;Locus_id=Os02g0105200;Note=Similar to Dihydrolipoamide S-acetyltransferase (EC 2.3.1.12).;Transcript_evidence=AK063525 (DDBJ%2C Best hit);ORF_evidence=NP_001104936.1 (RefSeq);GO=Biological Process: pyruvate metabolic process (GO:0006090),Biological Process: metabolic process (GO:0008152),Cellular Component: pyruvate dehydrogenase complex (GO:0045254),Molecular Function: dihydrolipoyllysine-residue acetyltransferase activity (GO:0004742),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Biotin/lipoyl attachment (IPR000089),2-oxoacid dehydrogenase acyltransferase%2C catalytic domain (IPR001078),2-oxo acid dehydrogenase%2C lipoyl-binding site (IPR003016),E3 binding (IPR004167),Dihydrolipoamide acetyltransferase%2C long form (IPR006257),Single hybrid motif (IPR011053),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=001-117-A04;Expression=AK063525;TENOR=Os02t0105200-01;KEGG=Os02t0105200-01 (EC:2.3.1.12)
Chr02	irgsp1_rep	five_prime_UTR	287571	287727	.	+	.	Parent=Os02t0105200-01
Chr02	irgsp1_rep	CDS	287728	287763	.	+	0	Parent=Os02t0105200-01
Chr02	irgsp1_rep	CDS	287980	288082	.	+	0	Parent=Os02t0105200-01
Chr02	irgsp1_rep	CDS	288808	288881	.	+	2	Parent=Os02t0105200-01
Chr02	irgsp1_rep	CDS	288965	289062	.	+	0	Parent=Os02t0105200-01
Chr02	irgsp1_rep	CDS	289340	289380	.	+	1	Parent=Os02t0105200-01
Chr02	irgsp1_rep	CDS	289977	290032	.	+	2	Parent=Os02t0105200-01
Chr02	irgsp1_rep	CDS	290170	290244	.	+	0	Parent=Os02t0105200-01
Chr02	irgsp1_rep	CDS	290377	290469	.	+	0	Parent=Os02t0105200-01
Chr02	irgsp1_rep	CDS	290602	290850	.	+	0	Parent=Os02t0105200-01
Chr02	irgsp1_rep	CDS	290930	291002	.	+	0	Parent=Os02t0105200-01
Chr02	irgsp1_rep	CDS	291681	291766	.	+	2	Parent=Os02t0105200-01
Chr02	irgsp1_rep	CDS	291853	291938	.	+	0	Parent=Os02t0105200-01
Chr02	irgsp1_rep	CDS	292067	292142	.	+	1	Parent=Os02t0105200-01
Chr02	irgsp1_rep	CDS	292280	292347	.	+	0	Parent=Os02t0105200-01
Chr02	irgsp1_rep	CDS	292430	292496	.	+	1	Parent=Os02t0105200-01
Chr02	irgsp1_rep	CDS	292570	292665	.	+	0	Parent=Os02t0105200-01
Chr02	irgsp1_rep	CDS	292741	292843	.	+	0	Parent=Os02t0105200-01
Chr02	irgsp1_rep	CDS	293214	293309	.	+	2	Parent=Os02t0105200-01
Chr02	irgsp1_rep	CDS	293396	293466	.	+	2	Parent=Os02t0105200-01
Chr02	irgsp1_rep	three_prime_UTR	293467	293885	.	+	.	Parent=Os02t0105200-01
Chr02	irgsp1_rep	mRNA	295303	298942	.	-	.	ID=Os02t0105300-01;Name=Os02t0105300-01;Locus_id=Os02g0105300;Note=Conserved hypothetical protein.;Transcript_evidence=AK106891 (DDBJ%2C Best hit);ORF_evidence=Q6YPG1 (UniProt);NIAS_FLcDNA=002-118-G06;TENOR=Os02t0105300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	298485	298942	.	-	.	Parent=Os02t0105300-01
Chr02	irgsp1_rep	five_prime_UTR	296330	296446	.	-	.	Parent=Os02t0105300-01
Chr02	irgsp1_rep	CDS	295562	296329	.	-	0	Parent=Os02t0105300-01
Chr02	irgsp1_rep	three_prime_UTR	295303	295561	.	-	.	Parent=Os02t0105300-01
Chr02	irgsp1_rep	mRNA	295324	299087	.	+	.	ID=Os02t0105400-01;Name=Os02t0105400-01;Locus_id=Os02g0105400;CGSNL Gene Symbol=LDH;CGSNL Gene Name=LACTATE DEHYDROGENASE;Oryzabase Gene Symbol Synonym(s)=LDH;Oryzabase Gene Name Synonym(s)=lactate dehydrogenase;Note=Similar to L-lactate dehydrogenase A (EC 1.1.1.27) (LDH-A).;Transcript_evidence=AK103257 (DDBJ%2C Best hit);ORF_evidence=A2WZU6 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: glycolysis (GO:0006096),Biological Process: cellular carbohydrate metabolic process (GO:0044262),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: L-lactate dehydrogenase activity (GO:0004459),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616);InterPro=Lactate/malate dehydrogenase%2C N-terminal (IPR001236),L-lactate/malate dehydrogenase (IPR001557),L-lactate dehydrogenase (IPR011304),Lactate dehydrogenase/glycoside hydrolase%2C family 4%2C C-terminal (IPR015955),NAD(P)-binding domain (IPR016040),L-lactate dehydrogenase%2C active site (IPR018177),Lactate/malate dehydrogenase%2C C-terminal (IPR022383);NIAS_FLcDNA=J033124A12;Oryzabase=15756;Expression=AK103257;TENOR=Os02t0105400-01;KEGG=Os02t0105400-01 (EC:1.1.1.27)
Chr02	irgsp1_rep	five_prime_UTR	295324	295490	.	+	.	Parent=Os02t0105400-01
Chr02	irgsp1_rep	CDS	295491	296222	.	+	0	Parent=Os02t0105400-01
Chr02	irgsp1_rep	CDS	298479	298925	.	+	0	Parent=Os02t0105400-01
Chr02	irgsp1_rep	three_prime_UTR	298926	299087	.	+	.	Parent=Os02t0105400-01
Chr02	irgsp1_rep	mRNA	295498	299167	.	+	.	ID=Os02t0105400-02;Name=Os02t0105400-02;Locus_id=Os02g0105400;CGSNL Gene Symbol=LDH;CGSNL Gene Name=LACTATE DEHYDROGENASE;Oryzabase Gene Symbol Synonym(s)=LDH;Oryzabase Gene Name Synonym(s)=lactate dehydrogenase;Note=Similar to L-lactate dehydrogenase.;Transcript_evidence=AK105416 (DDBJ%2C Best hit);ORF_evidence=A2WZU6 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: glycolysis (GO:0006096),Biological Process: cellular carbohydrate metabolic process (GO:0044262),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: L-lactate dehydrogenase activity (GO:0004459),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616);InterPro=Lactate/malate dehydrogenase%2C N-terminal (IPR001236),L-lactate/malate dehydrogenase (IPR001557),L-lactate dehydrogenase (IPR011304),Lactate dehydrogenase/glycoside hydrolase%2C family 4%2C C-terminal (IPR015955),NAD(P)-binding domain (IPR016040),L-lactate dehydrogenase%2C active site (IPR018177),Lactate/malate dehydrogenase%2C C-terminal (IPR022383);NIAS_FLcDNA=001-124-A01;Oryzabase=15756;Expression=AK105416;TENOR=Os02t0105400-02;KEGG=Os02t0105400-02 (EC:1.1.1.27)
Chr02	irgsp1_rep	five_prime_UTR	295498	295607	.	+	.	Parent=Os02t0105400-02
Chr02	irgsp1_rep	CDS	295608	296222	.	+	0	Parent=Os02t0105400-02
Chr02	irgsp1_rep	CDS	298479	298925	.	+	0	Parent=Os02t0105400-02
Chr02	irgsp1_rep	three_prime_UTR	298926	299167	.	+	.	Parent=Os02t0105400-02
Chr02	irgsp1_rep	mRNA	299744	300802	.	-	.	ID=Os02t0105450-01;Name=Os02t0105450-01;Locus_id=Os02g0105450;Note=Non-protein coding transcript.;Transcript_evidence=AK120505 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013123A20;TENOR=Os02t0105450-01
Chr02	irgsp1_rep	exon	299744	300802	.	-	.	Parent=Os02t0105450-01
Chr02	irgsp1_rep	mRNA	300074	302799	.	+	.	ID=Os02t0105500-01;Name=Os02t0105500-01;Locus_id=Os02g0105500;Note=IQ calmodulin-binding region domain containing protein.;Transcript_evidence=AK102953 (DDBJ%2C Best hit);ORF_evidence=B6T2R4 (UniProt);NIAS_FLcDNA=J033115E12;Expression=AK102953;TENOR=Os02t0105500-01;KEGG=Os02t0105500-01
Chr02	irgsp1_rep	five_prime_UTR	300074	300121	.	+	.	Parent=Os02t0105500-01
Chr02	irgsp1_rep	CDS	300122	300907	.	+	0	Parent=Os02t0105500-01
Chr02	irgsp1_rep	CDS	301447	301722	.	+	0	Parent=Os02t0105500-01
Chr02	irgsp1_rep	CDS	302347	302481	.	+	0	Parent=Os02t0105500-01
Chr02	irgsp1_rep	three_prime_UTR	302482	302799	.	+	.	Parent=Os02t0105500-01
Chr02	irgsp1_rep	mRNA	300109	302819	.	+	.	ID=Os02t0105500-02;Name=Os02t0105500-02;Locus_id=Os02g0105500;Note=IQ calmodulin-binding region domain containing protein.;Transcript_evidence=AK063929 (DDBJ%2C Best hit);ORF_evidence=B6T2R4 (UniProt);NIAS_FLcDNA=001-123-C12;Expression=AK063929;TENOR=Os02t0105500-02;KEGG=Os02t0105500-02
Chr02	irgsp1_rep	five_prime_UTR	300109	300121	.	+	.	Parent=Os02t0105500-02
Chr02	irgsp1_rep	CDS	300122	300907	.	+	0	Parent=Os02t0105500-02
Chr02	irgsp1_rep	CDS	301447	301722	.	+	0	Parent=Os02t0105500-02
Chr02	irgsp1_rep	CDS	302347	302481	.	+	0	Parent=Os02t0105500-02
Chr02	irgsp1_rep	three_prime_UTR	302482	302819	.	+	.	Parent=Os02t0105500-02
Chr02	irgsp1_rep	mRNA	304089	304849	.	-	.	ID=Os02t0105600-00;Name=Os02t0105600-00;Locus_id=Os02g0105600;Note=Similar to OSIGBa0158F13.2 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01K45 (UniProt);TENOR=Os02t0105600-00
Chr02	irgsp1_rep	CDS	304826	304849	.	-	0	Parent=Os02t0105600-00
Chr02	irgsp1_rep	CDS	304089	304478	.	-	0	Parent=Os02t0105600-00
Chr02	irgsp1_rep	mRNA	311537	316458	.	-	.	ID=Os02t0105800-01;Name=Os02t0105800-01;Locus_id=Os02g0105800;Oryzabase Gene Symbol Synonym(s)=OsFbox059%2C OsFbox59%2C Os_F0692;Oryzabase Gene Name Synonym(s)=F-box protein 59;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK102217 (DDBJ%2C Best hit);ORF_evidence=B8AGX0 (UniProt);NIAS_FLcDNA=J033087L07;Oryzabase=16857;Expression=AK102217;TENOR=Os02t0105800-01;KEGG=Os02t0105800-01
Chr02	irgsp1_rep	five_prime_UTR	316296	316458	.	-	.	Parent=Os02t0105800-01
Chr02	irgsp1_rep	CDS	316148	316295	.	-	0	Parent=Os02t0105800-01
Chr02	irgsp1_rep	CDS	314722	314819	.	-	2	Parent=Os02t0105800-01
Chr02	irgsp1_rep	CDS	312458	313255	.	-	0	Parent=Os02t0105800-01
Chr02	irgsp1_rep	CDS	312220	312372	.	-	0	Parent=Os02t0105800-01
Chr02	irgsp1_rep	CDS	311752	312138	.	-	0	Parent=Os02t0105800-01
Chr02	irgsp1_rep	three_prime_UTR	311537	311751	.	-	.	Parent=Os02t0105800-01
Chr02	irgsp1_rep	mRNA	316837	319120	.	-	.	ID=Os02t0105900-01;Name=Os02t0105900-01;Locus_id=Os02g0105900;Oryzabase Gene Name Synonym(s)=Ribosomal protein S4X;Note=Similar to 40S ribosomal protein S4.;Transcript_evidence=AK103949 (DDBJ%2C Best hit),AK061776 (DDBJ%2C Best hit),AK102423 (DDBJ%2C Best hit);ORF_evidence=P49398 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S4e (IPR000876),RNA-binding S4 (IPR002942),KOW (IPR005824),Ribosomal protein S4e%2C N-terminal (IPR013843),Ribosomal protein S4e%2C central (IPR013845),Ribosomal protein S4e%2C N-terminal%2C conserved site (IPR018199);NIAS_FLcDNA=001-014-B09,001-039-D06,J033093E13;Oryzabase=17698;Expression=AK103949;TENOR=Os02t0105900-01;KEGG=Os02t0105900-01
Chr02	irgsp1_rep	five_prime_UTR	319026	319120	.	-	.	Parent=Os02t0105900-01
Chr02	irgsp1_rep	CDS	319023	319025	.	-	0	Parent=Os02t0105900-01
Chr02	irgsp1_rep	CDS	318122	318199	.	-	0	Parent=Os02t0105900-01
Chr02	irgsp1_rep	CDS	317837	318017	.	-	0	Parent=Os02t0105900-01
Chr02	irgsp1_rep	CDS	317647	317744	.	-	2	Parent=Os02t0105900-01
Chr02	irgsp1_rep	CDS	316960	317397	.	-	0	Parent=Os02t0105900-01
Chr02	irgsp1_rep	three_prime_UTR	316837	316959	.	-	.	Parent=Os02t0105900-01
Chr02	irgsp1_rep	mRNA	316819	319099	.	+	.	ID=Os02t0106001-00;Name=Os02t0106001-00;Locus_id=Os02g0106001;Note=Conserved hypothetical protein.;Transcript_evidence=BT017558 (DDBJ);ORF_evidence=NP_001170255.1 (RefSeq);TENOR=Os02t0106001-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	316819	317011	.	+	.	Parent=Os02t0106001-00
Chr02	irgsp1_rep	CDS	317012	317314	.	+	0	Parent=Os02t0106001-00
Chr02	irgsp1_rep	three_prime_UTR	317315	317399	.	+	.	Parent=Os02t0106001-00
Chr02	irgsp1_rep	three_prime_UTR	317652	318022	.	+	.	Parent=Os02t0106001-00
Chr02	irgsp1_rep	three_prime_UTR	318127	318210	.	+	.	Parent=Os02t0106001-00
Chr02	irgsp1_rep	three_prime_UTR	319035	319099	.	+	.	Parent=Os02t0106001-00
Chr02	irgsp1_rep	mRNA	343057	346875	.	+	.	ID=Os02t0106100-01;Name=Os02t0106100-01;Locus_id=Os02g0106100;RAP-DB Gene Symbol Synonym(s)=OsVIN2%2C SGS1;RAP-DB Gene Name Synonym(s)=vacuolar invertase 2%2C small grain size1;Oryzabase Gene Symbol Synonym(s)=OSINV3%2C OsINV3%2C INV3%2C OsVIN2%2C VIN2%2C VINV;Oryzabase Gene Name Synonym(s)=invertase 3%2C fructosyl transferase%2C vacuolar invertase 2;Note=Vacuolar acid invertase%2C Sugar metabolism%2C Regulation of grain size;Transcript_evidence=AK072245;ORF_evidence=Q6ETD3;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: beta-fructofuranosidase activity (GO:0004564),Molecular Function: sucrose alpha-glucosidase activity (GO:0004575);InterPro=Glycosyl hydrolase%2C five-bladed beta-propellor domain superfamily (IPR023296),Concanavalin A-like lectin/glucanase domain superfamily (IPR013320),Glycoside hydrolase%2C family 32 (IPR001362),Beta-fructofuranosidase (IPR021792),Glycosyl hydrolase family 32%2C N-terminal (IPR013148),Glycosyl hydrolase family 32%2C C-terminal (IPR013189),Glycoside hydrolase%2C family 32%2C active site (IPR018053);NIAS_FLcDNA=J023002K22;Manual Curation=July 22%2C 2019;Literature_PMID=31321495;Oryzabase=11688;Expression=AK072245;TENOR=Os02t0106100-01;KEGG=Os02t0106100-01 (EC:3.2.1.26);Subcellular location=prevacuolar compartment (PVC) (GO:0005770), vacuole (GO:0005773)
Chr02	irgsp1_rep	five_prime_UTR	343057	343153	.	+	.	Parent=Os02t0106100-01
Chr02	irgsp1_rep	CDS	343154	343580	.	+	0	Parent=Os02t0106100-01
Chr02	irgsp1_rep	CDS	343956	344827	.	+	2	Parent=Os02t0106100-01
Chr02	irgsp1_rep	CDS	345830	346519	.	+	0	Parent=Os02t0106100-01
Chr02	irgsp1_rep	three_prime_UTR	346520	346875	.	+	.	Parent=Os02t0106100-01
Chr02	irgsp1_rep	mRNA	343383	346491	.	-	.	ID=Os02t0106201-00;Name=Os02t0106201-00;Locus_id=Os02g0106201;Note=Hypothetical protein.;Transcript_evidence=tplb0027b15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0106201-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	345940	346491	.	-	.	Parent=Os02t0106201-00
Chr02	irgsp1_rep	CDS	345844	345939	.	-	0	Parent=Os02t0106201-00
Chr02	irgsp1_rep	CDS	343938	344842	.	-	0	Parent=Os02t0106201-00
Chr02	irgsp1_rep	CDS	343383	343560	.	-	1	Parent=Os02t0106201-00
Chr02	irgsp1_rep	mRNA	350795	354294	.	-	.	ID=Os02t0106300-01;Name=Os02t0106300-01;Locus_id=Os02g0106300;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK110347 (DDBJ%2C Best hit);ORF_evidence=A2WZV4 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Calponin homology domain (IPR001715),Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-164-G08;Expression=AK110347;TENOR=Os02t0106300-01;KEGG=Os02t0106300-01
Chr02	irgsp1_rep	five_prime_UTR	354273	354294	.	-	.	Parent=Os02t0106300-01
Chr02	irgsp1_rep	CDS	352017	354272	.	-	0	Parent=Os02t0106300-01
Chr02	irgsp1_rep	three_prime_UTR	351825	352016	.	-	.	Parent=Os02t0106300-01
Chr02	irgsp1_rep	three_prime_UTR	351540	351723	.	-	.	Parent=Os02t0106300-01
Chr02	irgsp1_rep	three_prime_UTR	350795	351133	.	-	.	Parent=Os02t0106300-01
Chr02	irgsp1_rep	mRNA	385998	386946	.	-	.	ID=Os02t0106600-01;Name=Os02t0106600-01;Locus_id=Os02g0106600;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK107830 (DDBJ%2C Best hit);ORF_evidence=NP_001152282.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=002-133-G11;Expression=AK107830;TENOR=Os02t0106600-01;KEGG=Os02t0106600-01
Chr02	irgsp1_rep	five_prime_UTR	386865	386946	.	-	.	Parent=Os02t0106600-01
Chr02	irgsp1_rep	CDS	386298	386864	.	-	0	Parent=Os02t0106600-01
Chr02	irgsp1_rep	three_prime_UTR	385998	386297	.	-	.	Parent=Os02t0106600-01
Chr02	irgsp1_rep	mRNA	391819	395616	.	+	.	ID=Os02t0106700-01;Name=Os02t0106700-01;Locus_id=Os02g0106700;Note=Peptidase C78%2C ubiquitin fold modifier-specific peptidase 1/ 2 domain containing protein.;Transcript_evidence=AK073056 (DDBJ%2C Best hit);ORF_evidence=NP_001130919.1 (RefSeq);InterPro=Peptidase C78%2C ubiquitin fold modifier-specific peptidase 1/ 2 (IPR012462);NIAS_FLcDNA=J033020O16;TENOR=Os02t0106700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	391819	391879	.	+	.	Parent=Os02t0106700-01
Chr02	irgsp1_rep	CDS	391880	392148	.	+	0	Parent=Os02t0106700-01
Chr02	irgsp1_rep	CDS	392296	392395	.	+	1	Parent=Os02t0106700-01
Chr02	irgsp1_rep	CDS	392604	393400	.	+	0	Parent=Os02t0106700-01
Chr02	irgsp1_rep	CDS	393520	393634	.	+	1	Parent=Os02t0106700-01
Chr02	irgsp1_rep	CDS	393831	393926	.	+	0	Parent=Os02t0106700-01
Chr02	irgsp1_rep	CDS	394008	394091	.	+	0	Parent=Os02t0106700-01
Chr02	irgsp1_rep	three_prime_UTR	394092	394098	.	+	.	Parent=Os02t0106700-01
Chr02	irgsp1_rep	three_prime_UTR	394366	395616	.	+	.	Parent=Os02t0106700-01
Chr02	irgsp1_rep	mRNA	397365	403411	.	+	.	ID=Os02t0106800-01;Name=Os02t0106800-01;Locus_id=Os02g0106800;Note=TMPIT-like family protein.;Transcript_evidence=AK060675 (DDBJ%2C Best hit);ORF_evidence=B8AGX3 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=TMPIT-like (IPR012926);NIAS_FLcDNA=001-029-A04;Expression=AK060675;TENOR=Os02t0106800-01;KEGG=Os02t0106800-01
Chr02	irgsp1_rep	five_prime_UTR	397365	397405	.	+	.	Parent=Os02t0106800-01
Chr02	irgsp1_rep	CDS	397406	397609	.	+	0	Parent=Os02t0106800-01
Chr02	irgsp1_rep	CDS	398483	398561	.	+	0	Parent=Os02t0106800-01
Chr02	irgsp1_rep	CDS	398648	398742	.	+	2	Parent=Os02t0106800-01
Chr02	irgsp1_rep	CDS	399289	399393	.	+	0	Parent=Os02t0106800-01
Chr02	irgsp1_rep	CDS	399496	399575	.	+	0	Parent=Os02t0106800-01
Chr02	irgsp1_rep	CDS	399832	399922	.	+	1	Parent=Os02t0106800-01
Chr02	irgsp1_rep	CDS	400021	400128	.	+	0	Parent=Os02t0106800-01
Chr02	irgsp1_rep	CDS	400529	400615	.	+	0	Parent=Os02t0106800-01
Chr02	irgsp1_rep	CDS	400862	400927	.	+	0	Parent=Os02t0106800-01
Chr02	irgsp1_rep	CDS	403039	403188	.	+	0	Parent=Os02t0106800-01
Chr02	irgsp1_rep	three_prime_UTR	403189	403411	.	+	.	Parent=Os02t0106800-01
Chr02	irgsp1_rep	mRNA	404250	406672	.	-	.	ID=Os02t0106900-01;Name=Os02t0106900-01;Locus_id=Os02g0106900;CGSNL Gene Symbol=RLCK58;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 58;Oryzabase Gene Symbol Synonym(s)=OsRLCK58;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 58;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK099892 (DDBJ%2C Best hit);ORF_evidence=NP_001148054.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Tyrosine-protein kinase%2C active site (IPR008266),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013113C03;Oryzabase=18774;Expression=AK099892;TENOR=Os02t0106900-01;KEGG=Os02t0106900-01
Chr02	irgsp1_rep	five_prime_UTR	406619	406672	.	-	.	Parent=Os02t0106900-01
Chr02	irgsp1_rep	CDS	406087	406618	.	-	0	Parent=Os02t0106900-01
Chr02	irgsp1_rep	CDS	404464	405152	.	-	2	Parent=Os02t0106900-01
Chr02	irgsp1_rep	three_prime_UTR	404250	404463	.	-	.	Parent=Os02t0106900-01
Chr02	irgsp1_rep	mRNA	406058	406216	.	+	.	ID=Os02t0106933-00;Name=Os02t0106933-00;Locus_id=Os02g0106933;Note=Non-protein coding transcript.;Transcript_evidence=BT087207 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0106933-00
Chr02	irgsp1_rep	exon	406058	406216	.	+	.	Parent=Os02t0106933-00
Chr02	irgsp1_rep	mRNA	410645	411491	.	+	.	ID=Os02t0106966-00;Name=Os02t0106966-00;Locus_id=Os02g0106966;Note=Similar to emb1507 (embryo defective 1507)%3B ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding / nucleoside-triphosphatase/ nucleotide binding.;Transcript_evidence=AK376310 (DDBJ);ORF_evidence=NP_173520.1 (RefSeq);TENOR=Os02t0106966-00
Chr02	irgsp1_rep	five_prime_UTR	410645	410660	.	+	.	Parent=Os02t0106966-00
Chr02	irgsp1_rep	CDS	410661	411491	.	+	0	Parent=Os02t0106966-00
Chr02	irgsp1_rep	mRNA	416973	418387	.	+	.	ID=Os02t0107000-01;Name=Os02t0107000-01;Locus_id=Os02g0107000;Note=Sec63 domain domain containing protein.;Transcript_evidence=AK059539 (DDBJ%2C Best hit);ORF_evidence=B9F1R2 (UniProt);InterPro=Sec63 domain (IPR004179);NIAS_FLcDNA=001-029-E06;TENOR=Os02t0107000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	416973	416974	.	+	.	Parent=Os02t0107000-01
Chr02	irgsp1_rep	CDS	416975	418153	.	+	0	Parent=Os02t0107000-01
Chr02	irgsp1_rep	three_prime_UTR	418154	418387	.	+	.	Parent=Os02t0107000-01
Chr02	irgsp1_rep	mRNA	422507	424238	.	+	.	ID=Os02t0107200-01;Name=Os02t0107200-01;Locus_id=Os02g0107200;Note=Similar to diphosphomevalonate decarboxylase.;Transcript_evidence=AK241754 (DDBJ%2C Best hit);ORF_evidence=B6TCA9 (UniProt);GO=Biological Process: isoprenoid biosynthetic process (GO:0008299),Biological Process: phosphorylation (GO:0016310),Molecular Function: diphosphomevalonate decarboxylase activity (GO:0004163),Molecular Function: ATP binding (GO:0005524),Molecular Function: kinase activity (GO:0016301);InterPro=Diphosphomevalonate decarboxylase (IPR005935),GHMP kinase (IPR006204),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=J065204B19;TENOR=Os02t0107200-01;KEGG=Os02t0107200-01 (EC:4.1.1.33)
Chr02	irgsp1_rep	five_prime_UTR	422507	422597	.	+	.	Parent=Os02t0107200-01
Chr02	irgsp1_rep	five_prime_UTR	422680	422693	.	+	.	Parent=Os02t0107200-01
Chr02	irgsp1_rep	CDS	422694	422912	.	+	0	Parent=Os02t0107200-01
Chr02	irgsp1_rep	CDS	423357	423555	.	+	0	Parent=Os02t0107200-01
Chr02	irgsp1_rep	CDS	423737	423800	.	+	2	Parent=Os02t0107200-01
Chr02	irgsp1_rep	CDS	423894	423978	.	+	1	Parent=Os02t0107200-01
Chr02	irgsp1_rep	three_prime_UTR	423979	424238	.	+	.	Parent=Os02t0107200-01
Chr02	irgsp1_rep	mRNA	424941	426159	.	-	.	ID=Os02t0107251-01;Name=Os02t0107251-01;Locus_id=Os02g0107251;Note=Conserved hypothetical protein.;Transcript_evidence=AK288063 (DDBJ%2C Best hit);ORF_evidence=Q7EXZ7 (UniProt);NIAS_FLcDNA=J075155C04;TENOR=Os02t0107251-01
Chr02	irgsp1_rep	five_prime_UTR	426045	426159	.	-	.	Parent=Os02t0107251-01
Chr02	irgsp1_rep	CDS	425058	426044	.	-	0	Parent=Os02t0107251-01
Chr02	irgsp1_rep	three_prime_UTR	424941	425057	.	-	.	Parent=Os02t0107251-01
Chr02	irgsp1_rep	mRNA	425109	426481	.	+	.	ID=Os02t0107300-01;Name=Os02t0107300-01;Locus_id=Os02g0107300;Note=Conserved hypothetical protein.;Transcript_evidence=AK060506 (DDBJ%2C Best hit);ORF_evidence=Q6ZG21 (UniProt);NIAS_FLcDNA=001-019-A02;Expression=AK060506;TENOR=Os02t0107300-01;KEGG=Os02t0107300-01
Chr02	irgsp1_rep	five_prime_UTR	425109	425464	.	+	.	Parent=Os02t0107300-01
Chr02	irgsp1_rep	CDS	425465	425926	.	+	0	Parent=Os02t0107300-01
Chr02	irgsp1_rep	three_prime_UTR	425927	426481	.	+	.	Parent=Os02t0107300-01
Chr02	irgsp1_rep	mRNA	426505	426768	.	+	.	ID=Os02t0107350-00;Name=Os02t0107350-00;Locus_id=Os02g0107350;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8AGX4 (UniProt);TENOR=Os02t0107350-00
Chr02	irgsp1_rep	CDS	426505	426768	.	+	0	Parent=Os02t0107350-00
Chr02	irgsp1_rep	mRNA	434565	436081	.	-	.	ID=Os02t0107600-01;Name=Os02t0107600-01;Locus_id=Os02g0107600;Note=Protein of unknown function DUF1677%2C Oryza sativa family protein.;Transcript_evidence=AK067983 (DDBJ%2C Best hit),AK102128 (DDBJ%2C Best hit);ORF_evidence=A2WZW3 (UniProt);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);NIAS_FLcDNA=J013124E14,J033084P16;Expression=AK067983;TENOR=Os02t0107600-01;KEGG=Os02t0107600-01
Chr02	irgsp1_rep	five_prime_UTR	435880	436081	.	-	.	Parent=Os02t0107600-01
Chr02	irgsp1_rep	CDS	434731	435879	.	-	0	Parent=Os02t0107600-01
Chr02	irgsp1_rep	three_prime_UTR	434565	434730	.	-	.	Parent=Os02t0107600-01
Chr02	irgsp1_rep	mRNA	449100	449841	.	-	.	ID=Os02t0107800-00;Name=Os02t0107800-00;Locus_id=Os02g0107800;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6ETT6 (UniProt);TENOR=Os02t0107800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	449664	449841	.	-	0	Parent=Os02t0107800-00
Chr02	irgsp1_rep	CDS	449100	449278	.	-	2	Parent=Os02t0107800-00
Chr02	irgsp1_rep	mRNA	451471	453156	.	-	.	ID=Os02t0107900-00;Name=Os02t0107900-00;Locus_id=Os02g0107900;Note=Similar to ABC transporter family%2C cholesterol/phospholipid flippase.;Transcript_evidence=ab initio prediction;ORF_evidence=XP_002318606.1 (RefSeq);GO=Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887);InterPro=ABC transporter-like (IPR003439);TENOR=Os02t0107900-00;KEGG=Os02t0107900-00
Chr02	irgsp1_rep	CDS	453095	453156	.	-	0	Parent=Os02t0107900-00
Chr02	irgsp1_rep	CDS	452886	452970	.	-	1	Parent=Os02t0107900-00
Chr02	irgsp1_rep	CDS	452214	452342	.	-	0	Parent=Os02t0107900-00
Chr02	irgsp1_rep	CDS	452028	452133	.	-	0	Parent=Os02t0107900-00
Chr02	irgsp1_rep	CDS	451825	451913	.	-	2	Parent=Os02t0107900-00
Chr02	irgsp1_rep	CDS	451471	451725	.	-	0	Parent=Os02t0107900-00
Chr02	irgsp1_rep	mRNA	458781	459988	.	-	.	ID=Os02t0108000-01;Name=Os02t0108000-01;Locus_id=Os02g0108000;Note=Hypothetical protein.;Transcript_evidence=AK065886 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013043M07;TENOR=Os02t0108000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	459443	459988	.	-	.	Parent=Os02t0108000-01
Chr02	irgsp1_rep	CDS	458987	459442	.	-	0	Parent=Os02t0108000-01
Chr02	irgsp1_rep	three_prime_UTR	458781	458986	.	-	.	Parent=Os02t0108000-01
Chr02	irgsp1_rep	mRNA	458901	460810	.	+	.	ID=Os02t0108100-01;Name=Os02t0108100-01;Locus_id=Os02g0108100;Note=Conserved hypothetical protein.;Transcript_evidence=AK106287 (DDBJ%2C Best hit);ORF_evidence=Q10LY3 (UniProt);NIAS_FLcDNA=002-101-A11;Expression=AK106287;TENOR=Os02t0108100-01;KEGG=Os02t0108100-01
Chr02	irgsp1_rep	five_prime_UTR	458901	458914	.	+	.	Parent=Os02t0108100-01
Chr02	irgsp1_rep	CDS	458915	460087	.	+	0	Parent=Os02t0108100-01
Chr02	irgsp1_rep	three_prime_UTR	460088	460810	.	+	.	Parent=Os02t0108100-01
Chr02	irgsp1_rep	mRNA	482360	483874	.	-	.	ID=Os02t0108302-01;Name=Os02t0108302-01;Locus_id=Os02g0108302;Note=Hypothetical gene.;Transcript_evidence=AK241203 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065122D12;TENOR=Os02t0108302-01;KEGG=Os02t0108302-01
Chr02	irgsp1_rep	five_prime_UTR	483387	483874	.	-	.	Parent=Os02t0108302-01
Chr02	irgsp1_rep	CDS	483045	483386	.	-	0	Parent=Os02t0108302-01
Chr02	irgsp1_rep	three_prime_UTR	482593	483044	.	-	.	Parent=Os02t0108302-01
Chr02	irgsp1_rep	three_prime_UTR	482360	482501	.	-	.	Parent=Os02t0108302-01
Chr02	irgsp1_rep	mRNA	482598	483761	.	+	.	ID=Os02t0108400-00;Name=Os02t0108400-00;Locus_id=Os02g0108400;Note=Protein of unknown function DUF1677%2C Oryza sativa family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001045638.1 (RefSeq);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);TENOR=Os02t0108400-00;KEGG=Os02t0108400-00
Chr02	irgsp1_rep	CDS	482598	483761	.	+	0	Parent=Os02t0108400-00
Chr02	irgsp1_rep	mRNA	484413	485397	.	-	.	ID=Os02t0108500-01;Name=Os02t0108500-01;Locus_id=Os02g0108500;Note=Non-protein coding transcript.;Transcript_evidence=AK063089 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-111-A11;TENOR=Os02t0108500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	exon	484413	485397	.	-	.	Parent=Os02t0108500-01
Chr02	irgsp1_rep	mRNA	487231	487548	.	+	.	ID=Os02t0108700-00;Name=Os02t0108700-00;Locus_id=Os02g0108700;Note=Similar to predicted protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_173520.1 (RefSeq);InterPro=Sec63 domain (IPR004179);TENOR=Os02t0108700-00;KEGG=Os02t0108700-00 (EC:3.6.1.-)
Chr02	irgsp1_rep	CDS	487231	487548	.	+	0	Parent=Os02t0108700-00
Chr02	irgsp1_rep	mRNA	488913	490611	.	+	.	ID=Os02t0108800-01;Name=Os02t0108800-01;Locus_id=Os02g0108800;Note=CytoChrome P450 domain containing protein.;Transcript_evidence=AK099951 (DDBJ%2C Best hit);ORF_evidence=A2WZY4 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J013123G02;TENOR=Os02t0108800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	488913	488942	.	+	.	Parent=Os02t0108800-01
Chr02	irgsp1_rep	CDS	488943	490457	.	+	0	Parent=Os02t0108800-01
Chr02	irgsp1_rep	three_prime_UTR	490458	490611	.	+	.	Parent=Os02t0108800-01
Chr02	irgsp1_rep	mRNA	491452	492594	.	+	.	ID=Os02t0108900-00;Name=Os02t0108900-00;Locus_id=Os02g0108900;Note=Protein of unknown function DUF1677%2C Oryza sativa family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001172772.1 (RefSeq);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);TENOR=Os02t0108900-00;KEGG=Os02t0108900-00
Chr02	irgsp1_rep	CDS	491452	492594	.	+	0	Parent=Os02t0108900-00
Chr02	irgsp1_rep	mRNA	496768	500351	.	-	.	ID=Os02t0109100-01;Name=Os02t0109100-01;Locus_id=Os02g0109100;Note=Similar to diphosphomevalonate decarboxylase.;Transcript_evidence=AK243049 (DDBJ%2C Best hit);ORF_evidence=B6TCA9 (UniProt);GO=Biological Process: isoprenoid biosynthetic process (GO:0008299),Biological Process: phosphorylation (GO:0016310),Molecular Function: diphosphomevalonate decarboxylase activity (GO:0004163),Molecular Function: ATP binding (GO:0005524),Molecular Function: kinase activity (GO:0016301);InterPro=Diphosphomevalonate decarboxylase (IPR005935),GHMP kinase (IPR006204),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=J100010I02;TENOR=Os02t0109100-01;KEGG=Os02t0109100-01 (EC:4.1.1.33)
Chr02	irgsp1_rep	five_prime_UTR	500232	500351	.	-	.	Parent=Os02t0109100-01
Chr02	irgsp1_rep	five_prime_UTR	500135	500148	.	-	.	Parent=Os02t0109100-01
Chr02	irgsp1_rep	CDS	499916	500134	.	-	0	Parent=Os02t0109100-01
Chr02	irgsp1_rep	CDS	499246	499444	.	-	0	Parent=Os02t0109100-01
Chr02	irgsp1_rep	CDS	498994	499057	.	-	2	Parent=Os02t0109100-01
Chr02	irgsp1_rep	CDS	498838	498901	.	-	1	Parent=Os02t0109100-01
Chr02	irgsp1_rep	CDS	498660	498740	.	-	0	Parent=Os02t0109100-01
Chr02	irgsp1_rep	CDS	498368	498454	.	-	0	Parent=Os02t0109100-01
Chr02	irgsp1_rep	CDS	498054	498211	.	-	0	Parent=Os02t0109100-01
Chr02	irgsp1_rep	CDS	497918	497966	.	-	1	Parent=Os02t0109100-01
Chr02	irgsp1_rep	CDS	497231	497352	.	-	0	Parent=Os02t0109100-01
Chr02	irgsp1_rep	CDS	496936	497158	.	-	1	Parent=Os02t0109100-01
Chr02	irgsp1_rep	three_prime_UTR	496768	496935	.	-	.	Parent=Os02t0109100-01
Chr02	irgsp1_rep	mRNA	502493	504146	.	-	.	ID=Os02t0109200-01;Name=Os02t0109200-01;Locus_id=Os02g0109200;Note=Protein of unknown function DUF793 family protein.;Transcript_evidence=AK108815 (DDBJ%2C Best hit);ORF_evidence=B8AG56 (UniProt);InterPro=Protein BYPASS-related (IPR008511);NIAS_FLcDNA=002-151-E05;Expression=AK108815;TENOR=Os02t0109200-01;KEGG=Os02t0109200-01
Chr02	irgsp1_rep	five_prime_UTR	504039	504146	.	-	.	Parent=Os02t0109200-01
Chr02	irgsp1_rep	CDS	502785	504038	.	-	0	Parent=Os02t0109200-01
Chr02	irgsp1_rep	three_prime_UTR	502493	502784	.	-	.	Parent=Os02t0109200-01
Chr02	irgsp1_rep	mRNA	500469	503078	.	-	.	ID=Os02t0109200-02;Name=Os02t0109200-02;Locus_id=Os02g0109200;Note=Protein of unknown function DUF793 family protein.;Transcript_evidence=AK120727 (DDBJ%2C Best hit);ORF_evidence=Q6ETS7 (UniProt);InterPro=Protein BYPASS-related (IPR008511);NIAS_FLcDNA=J023002P17;Expression=AK120727;TENOR=Os02t0109200-02;KEGG=Os02t0109200-02
Chr02	irgsp1_rep	CDS	502785	503078	.	-	0	Parent=Os02t0109200-02
Chr02	irgsp1_rep	three_prime_UTR	500469	502784	.	-	.	Parent=Os02t0109200-02
Chr02	irgsp1_rep	mRNA	509377	512956	.	-	.	ID=Os02t0109400-00;Name=Os02t0109400-00;Locus_id=Os02g0109400;CGSNL Gene Symbol=JMJ719;CGSNL Gene Name=JUMONJI 719;Oryzabase Gene Symbol Synonym(s)=OsJMJ719;Oryzabase Gene Name Synonym(s)=Jumonji 719;Note=Transcription factor jumonji/aspartyl beta-hydroxylase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9F1R8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Transcription factor jumonji/aspartyl beta-hydroxylase (IPR003347),Transcription factor jumonji (IPR013129);Oryzabase=15211;TENOR=Os02t0109400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	512942	512956	.	-	0	Parent=Os02t0109400-00
Chr02	irgsp1_rep	CDS	510996	511718	.	-	0	Parent=Os02t0109400-00
Chr02	irgsp1_rep	CDS	510843	510915	.	-	0	Parent=Os02t0109400-00
Chr02	irgsp1_rep	CDS	510684	510769	.	-	2	Parent=Os02t0109400-00
Chr02	irgsp1_rep	CDS	510420	510539	.	-	0	Parent=Os02t0109400-00
Chr02	irgsp1_rep	CDS	510200	510270	.	-	0	Parent=Os02t0109400-00
Chr02	irgsp1_rep	CDS	509377	509425	.	-	1	Parent=Os02t0109400-00
Chr02	irgsp1_rep	mRNA	513740	517148	.	-	.	ID=Os02t0109501-00;Name=Os02t0109501-00;Locus_id=Os02g0109501;CGSNL Gene Symbol=JMJ719;CGSNL Gene Name=JUMONJI 719;Oryzabase Gene Symbol Synonym(s)=OsJMJ719;Oryzabase Gene Name Synonym(s)=Jumonji 719;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B8AG57 (UniProt);Oryzabase=15211;TENOR=Os02t0109501-00;KEGG=Os02t0109501-00
Chr02	irgsp1_rep	CDS	517083	517148	.	-	0	Parent=Os02t0109501-00
Chr02	irgsp1_rep	CDS	516428	516478	.	-	0	Parent=Os02t0109501-00
Chr02	irgsp1_rep	CDS	516195	516341	.	-	0	Parent=Os02t0109501-00
Chr02	irgsp1_rep	CDS	515952	516088	.	-	0	Parent=Os02t0109501-00
Chr02	irgsp1_rep	CDS	515702	515801	.	-	1	Parent=Os02t0109501-00
Chr02	irgsp1_rep	CDS	515477	515609	.	-	0	Parent=Os02t0109501-00
Chr02	irgsp1_rep	CDS	515336	515399	.	-	2	Parent=Os02t0109501-00
Chr02	irgsp1_rep	CDS	514494	515250	.	-	1	Parent=Os02t0109501-00
Chr02	irgsp1_rep	CDS	513740	514081	.	-	0	Parent=Os02t0109501-00
Chr02	irgsp1_rep	mRNA	534963	538203	.	-	.	ID=Os02t0109800-01;Name=Os02t0109800-01;Locus_id=Os02g0109800;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK069014 (DDBJ%2C Best hit);ORF_evidence=B6SKU4 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide TPR2 (IPR013105),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J013170A02;Expression=AK069014;TENOR=Os02t0109800-01;KEGG=Os02t0109800-01
Chr02	irgsp1_rep	five_prime_UTR	538159	538203	.	-	.	Parent=Os02t0109800-01
Chr02	irgsp1_rep	CDS	537503	538158	.	-	0	Parent=Os02t0109800-01
Chr02	irgsp1_rep	CDS	536318	537226	.	-	1	Parent=Os02t0109800-01
Chr02	irgsp1_rep	CDS	535275	535509	.	-	1	Parent=Os02t0109800-01
Chr02	irgsp1_rep	three_prime_UTR	534963	535274	.	-	.	Parent=Os02t0109800-01
Chr02	irgsp1_rep	mRNA	540110	547449	.	+	.	ID=Os02t0109900-01;Name=Os02t0109900-01;Locus_id=Os02g0109900;Note=Hypothetical conserved gene.;Transcript_evidence=AK287671 (DDBJ%2C Best hit);ORF_evidence=Q6Z900 (UniProt);NIAS_FLcDNA=J065120M01;TENOR=Os02t0109900-01;KEGG=Os02t0109900-01
Chr02	irgsp1_rep	five_prime_UTR	540110	540181	.	+	.	Parent=Os02t0109900-01
Chr02	irgsp1_rep	CDS	540182	540583	.	+	0	Parent=Os02t0109900-01
Chr02	irgsp1_rep	CDS	541266	541475	.	+	0	Parent=Os02t0109900-01
Chr02	irgsp1_rep	CDS	541557	542018	.	+	0	Parent=Os02t0109900-01
Chr02	irgsp1_rep	CDS	542112	542222	.	+	0	Parent=Os02t0109900-01
Chr02	irgsp1_rep	CDS	542309	542488	.	+	0	Parent=Os02t0109900-01
Chr02	irgsp1_rep	CDS	543083	543367	.	+	0	Parent=Os02t0109900-01
Chr02	irgsp1_rep	CDS	544581	544701	.	+	0	Parent=Os02t0109900-01
Chr02	irgsp1_rep	CDS	544802	544923	.	+	2	Parent=Os02t0109900-01
Chr02	irgsp1_rep	three_prime_UTR	544924	544928	.	+	.	Parent=Os02t0109900-01
Chr02	irgsp1_rep	three_prime_UTR	545285	545563	.	+	.	Parent=Os02t0109900-01
Chr02	irgsp1_rep	three_prime_UTR	547154	547449	.	+	.	Parent=Os02t0109900-01
Chr02	irgsp1_rep	mRNA	545700	548055	.	-	.	ID=Os02t0110000-01;Name=Os02t0110000-01;Locus_id=Os02g0110000;CGSNL Gene Symbol=GELP30;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 30;Oryzabase Gene Symbol Synonym(s)=OsGELP30;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 30;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK106946 (DDBJ%2C Best hit);ORF_evidence=B8AG69 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=002-119-D11;Oryzabase=10980;Expression=AK106946;TENOR=Os02t0110000-01;KEGG=Os02t0110000-01
Chr02	irgsp1_rep	five_prime_UTR	548009	548055	.	-	.	Parent=Os02t0110000-01
Chr02	irgsp1_rep	CDS	547453	548008	.	-	0	Parent=Os02t0110000-01
Chr02	irgsp1_rep	CDS	547165	547295	.	-	2	Parent=Os02t0110000-01
Chr02	irgsp1_rep	CDS	546635	546865	.	-	0	Parent=Os02t0110000-01
Chr02	irgsp1_rep	CDS	546314	546566	.	-	0	Parent=Os02t0110000-01
Chr02	irgsp1_rep	CDS	546033	546223	.	-	2	Parent=Os02t0110000-01
Chr02	irgsp1_rep	three_prime_UTR	545700	546032	.	-	.	Parent=Os02t0110000-01
Chr02	irgsp1_rep	mRNA	554511	556079	.	-	.	ID=Os02t0110101-00;Name=Os02t0110101-00;Locus_id=Os02g0110101;Note=Hypothetical gene.;Transcript_evidence=EU972984 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0110101-00;KEGG=Os02t0110101-00
Chr02	irgsp1_rep	five_prime_UTR	556005	556079	.	-	.	Parent=Os02t0110101-00
Chr02	irgsp1_rep	CDS	555399	556004	.	-	0	Parent=Os02t0110101-00
Chr02	irgsp1_rep	three_prime_UTR	554511	555398	.	-	.	Parent=Os02t0110101-00
Chr02	irgsp1_rep	mRNA	554579	556320	.	+	.	ID=Os02t0110200-01;Name=Os02t0110200-01;Locus_id=Os02g0110200;RAP-DB Gene Symbol Synonym(s)=HPL3%2C OsHPL3%2C CYP74B2;RAP-DB Gene Name Synonym(s)=HYDROPEROXIDE LYASE 3;CGSNL Gene Symbol=HPL3;CGSNL Gene Name=HYDROPEROXIDE LYASE 3;Oryzabase Gene Symbol Synonym(s)=OsHPL3%2C CYP74B2%2C OsCYP74B2;Note=Fatty acid 13-hydroperoxide lyase (CYP74B)%2C Plant defense;Transcript_evidence=AY340220 (japonica),AK105694;ORF_evidence=Q7X9C2,Q6Z8Z7;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: monooxygenase activity (GO:0004497),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group IV (IPR002403);NIAS_FLcDNA=001-201-C08;Manual Curation=November 12%2C 2009;Literature_PMID=16116284,16531481;Oryzabase=7428;Expression=AK105694;TENOR=Os02t0110200-01;KEGG=Os02t0110200-01 (EC:4.1.2.-)
Chr02	irgsp1_rep	five_prime_UTR	554579	554634	.	+	.	Parent=Os02t0110200-01
Chr02	irgsp1_rep	CDS	554635	556098	.	+	0	Parent=Os02t0110200-01
Chr02	irgsp1_rep	three_prime_UTR	556099	556320	.	+	.	Parent=Os02t0110200-01
Chr02	irgsp1_rep	mRNA	554637	556281	.	+	.	ID=Os02t0110200-02;Name=Os02t0110200-02;Locus_id=Os02g0110200;CGSNL Gene Symbol=HPL3;CGSNL Gene Name=HYDROPEROXIDE LYASE 3;Oryzabase Gene Symbol Synonym(s)=OsHPL3%2C CYP74B2%2C OsCYP74B2;Note=Similar to Hydroperoxide lyase.;Transcript_evidence=AK100012 (DDBJ%2C Best hit);ORF_evidence=Q7X9C2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: monooxygenase activity (GO:0004497),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group IV (IPR002403);NIAS_FLcDNA=J013140G07;Oryzabase=7428;Expression=AK100012;TENOR=Os02t0110200-02;KEGG=Os02t0110200-02 (EC:4.1.2.-)
Chr02	irgsp1_rep	five_prime_UTR	554637	554637	.	+	.	Parent=Os02t0110200-02
Chr02	irgsp1_rep	CDS	554638	556098	.	+	0	Parent=Os02t0110200-02
Chr02	irgsp1_rep	three_prime_UTR	556099	556281	.	+	.	Parent=Os02t0110200-02
Chr02	irgsp1_rep	mRNA	558906	559965	.	+	.	ID=Os02t0110300-00;Name=Os02t0110300-00;Locus_id=Os02g0110300;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6Z8Z6 (UniProt);TENOR=Os02t0110300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	558906	558962	.	+	0	Parent=Os02t0110300-00
Chr02	irgsp1_rep	CDS	559139	559209	.	+	0	Parent=Os02t0110300-00
Chr02	irgsp1_rep	CDS	559644	559965	.	+	1	Parent=Os02t0110300-00
Chr02	irgsp1_rep	mRNA	561897	564428	.	-	.	ID=Os02t0110400-01;Name=Os02t0110400-01;Locus_id=Os02g0110400;Note=Sugar transporter%2C conserved site domain containing protein.;Transcript_evidence=AK073200 (DDBJ%2C Best hit);ORF_evidence=B5RHT1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033023K10;Expression=AK073200;TENOR=Os02t0110400-01;KEGG=Os02t0110400-01
Chr02	irgsp1_rep	five_prime_UTR	564407	564428	.	-	.	Parent=Os02t0110400-01
Chr02	irgsp1_rep	CDS	562163	564406	.	-	0	Parent=Os02t0110400-01
Chr02	irgsp1_rep	three_prime_UTR	561897	562162	.	-	.	Parent=Os02t0110400-01
Chr02	irgsp1_rep	mRNA	564717	565953	.	-	.	ID=Os02t0110500-01;Name=Os02t0110500-01;Locus_id=Os02g0110500;Note=Conserved hypothetical protein.;Transcript_evidence=AK063061 (DDBJ%2C Best hit);ORF_evidence=A3A2C2 (UniProt);NIAS_FLcDNA=001-110-F10;Expression=AK063061;TENOR=Os02t0110500-01;KEGG=Os02t0110500-01
Chr02	irgsp1_rep	five_prime_UTR	565917	565953	.	-	.	Parent=Os02t0110500-01
Chr02	irgsp1_rep	CDS	565602	565916	.	-	0	Parent=Os02t0110500-01
Chr02	irgsp1_rep	three_prime_UTR	565463	565601	.	-	.	Parent=Os02t0110500-01
Chr02	irgsp1_rep	three_prime_UTR	565164	565384	.	-	.	Parent=Os02t0110500-01
Chr02	irgsp1_rep	three_prime_UTR	564717	565075	.	-	.	Parent=Os02t0110500-01
Chr02	irgsp1_rep	mRNA	566089	572447	.	-	.	ID=Os02t0110600-01;Name=Os02t0110600-01;Locus_id=Os02g0110600;Note=Similar to protein kinase.;Transcript_evidence=AK061840 (DDBJ%2C Best hit);ORF_evidence=NP_001152055.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-040-E02;Expression=AK061840;TENOR=Os02t0110600-01;KEGG=Os02t0110600-01 (EC:2.7.11.1)
Chr02	irgsp1_rep	five_prime_UTR	572349	572447	.	-	.	Parent=Os02t0110600-01
Chr02	irgsp1_rep	five_prime_UTR	568490	568542	.	-	.	Parent=Os02t0110600-01
Chr02	irgsp1_rep	CDS	568420	568489	.	-	0	Parent=Os02t0110600-01
Chr02	irgsp1_rep	CDS	568173	568298	.	-	2	Parent=Os02t0110600-01
Chr02	irgsp1_rep	CDS	567981	568097	.	-	2	Parent=Os02t0110600-01
Chr02	irgsp1_rep	CDS	567623	567880	.	-	2	Parent=Os02t0110600-01
Chr02	irgsp1_rep	CDS	567223	567464	.	-	2	Parent=Os02t0110600-01
Chr02	irgsp1_rep	CDS	566641	567127	.	-	0	Parent=Os02t0110600-01
Chr02	irgsp1_rep	CDS	566552	566579	.	-	2	Parent=Os02t0110600-01
Chr02	irgsp1_rep	CDS	566434	566521	.	-	1	Parent=Os02t0110600-01
Chr02	irgsp1_rep	three_prime_UTR	566089	566433	.	-	.	Parent=Os02t0110600-01
Chr02	irgsp1_rep	mRNA	566089	572430	.	-	.	ID=Os02t0110600-02;Name=Os02t0110600-02;Locus_id=Os02g0110600;Note=Similar to protein kinase.;Transcript_evidence=AK069727 (DDBJ%2C Best hit);ORF_evidence=NP_001152055.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023027K11;TENOR=Os02t0110600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	572370	572430	.	-	.	Parent=Os02t0110600-02
Chr02	irgsp1_rep	CDS	572349	572369	.	-	0	Parent=Os02t0110600-02
Chr02	irgsp1_rep	CDS	568420	568492	.	-	0	Parent=Os02t0110600-02
Chr02	irgsp1_rep	CDS	568173	568298	.	-	2	Parent=Os02t0110600-02
Chr02	irgsp1_rep	CDS	567981	568100	.	-	2	Parent=Os02t0110600-02
Chr02	irgsp1_rep	CDS	567623	567880	.	-	2	Parent=Os02t0110600-02
Chr02	irgsp1_rep	CDS	567223	567464	.	-	2	Parent=Os02t0110600-02
Chr02	irgsp1_rep	CDS	566201	567127	.	-	0	Parent=Os02t0110600-02
Chr02	irgsp1_rep	three_prime_UTR	566089	566200	.	-	.	Parent=Os02t0110600-02
Chr02	irgsp1_rep	mRNA	566089	569267	.	-	.	ID=Os02t0110600-03;Name=Os02t0110600-03;Locus_id=Os02g0110600;Note=Similar to protein kinase.;Transcript_evidence=AK099755 (DDBJ%2C Best hit);ORF_evidence=NP_001152055.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013093A22;TENOR=Os02t0110600-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	568897	569267	.	-	.	Parent=Os02t0110600-03
Chr02	irgsp1_rep	five_prime_UTR	568490	568542	.	-	.	Parent=Os02t0110600-03
Chr02	irgsp1_rep	CDS	568420	568489	.	-	0	Parent=Os02t0110600-03
Chr02	irgsp1_rep	CDS	568173	568298	.	-	2	Parent=Os02t0110600-03
Chr02	irgsp1_rep	CDS	567981	568097	.	-	2	Parent=Os02t0110600-03
Chr02	irgsp1_rep	CDS	567623	567880	.	-	2	Parent=Os02t0110600-03
Chr02	irgsp1_rep	CDS	567223	567464	.	-	2	Parent=Os02t0110600-03
Chr02	irgsp1_rep	CDS	566201	567127	.	-	0	Parent=Os02t0110600-03
Chr02	irgsp1_rep	three_prime_UTR	566089	566200	.	-	.	Parent=Os02t0110600-03
Chr02	irgsp1_rep	mRNA	571882	573253	.	+	.	ID=Os02t0110650-01;Name=Os02t0110650-01;Locus_id=Os02g0110650;Note=Hypothetical gene.;Transcript_evidence=AK288654 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090057B03;TENOR=Os02t0110650-01;KEGG=Os02t0110650-01
Chr02	irgsp1_rep	five_prime_UTR	571882	572584	.	+	.	Parent=Os02t0110650-01
Chr02	irgsp1_rep	CDS	572585	572935	.	+	0	Parent=Os02t0110650-01
Chr02	irgsp1_rep	three_prime_UTR	572936	573253	.	+	.	Parent=Os02t0110650-01
Chr02	irgsp1_rep	mRNA	573376	575525	.	-	.	ID=Os02t0110700-01;Name=Os02t0110700-01;Locus_id=Os02g0110700;CGSNL Gene Symbol=DLN39;CGSNL Gene Name=DLN REPRESSOR 39;Oryzabase Gene Symbol Synonym(s)=CHR744%2C OsCHR744%2C OsDLN39;Oryzabase Gene Name Synonym(s)=CHD-related gene 744%2C DLN repressor 39%2C DLN motif protein 39;Note=Conserved hypothetical protein.;Transcript_evidence=AK058383 (DDBJ%2C Best hit);ORF_evidence=B9F1S4 (UniProt);NIAS_FLcDNA=001-014-H09;Oryzabase=10885;TENOR=Os02t0110700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	575525	575525	.	-	.	Parent=Os02t0110700-01
Chr02	irgsp1_rep	CDS	574997	575524	.	-	0	Parent=Os02t0110700-01
Chr02	irgsp1_rep	CDS	574705	574900	.	-	0	Parent=Os02t0110700-01
Chr02	irgsp1_rep	CDS	573638	574305	.	-	2	Parent=Os02t0110700-01
Chr02	irgsp1_rep	three_prime_UTR	573376	573637	.	-	.	Parent=Os02t0110700-01
Chr02	irgsp1_rep	mRNA	573103	574170	.	-	.	ID=Os02t0110700-02;Name=Os02t0110700-02;Locus_id=Os02g0110700;CGSNL Gene Symbol=DLN39;CGSNL Gene Name=DLN REPRESSOR 39;Oryzabase Gene Symbol Synonym(s)=CHR744%2C OsCHR744%2C OsDLN39;Oryzabase Gene Name Synonym(s)=CHD-related gene 744%2C DLN repressor 39%2C DLN motif protein 39;Note=Hypothetical conserved gene.;Transcript_evidence=AK061065 (DDBJ%2C Best hit);ORF_evidence=B9F1S4 (UniProt);NIAS_FLcDNA=006-206-B09;Oryzabase=10885;Expression=AK061065;TENOR=Os02t0110700-02;KEGG=Os02t0110700-02
Chr02	irgsp1_rep	five_prime_UTR	574169	574170	.	-	.	Parent=Os02t0110700-02
Chr02	irgsp1_rep	CDS	573638	574168	.	-	0	Parent=Os02t0110700-02
Chr02	irgsp1_rep	three_prime_UTR	573103	573637	.	-	.	Parent=Os02t0110700-02
Chr02	irgsp1_rep	mRNA	596645	609187	.	+	.	ID=Os02t0110900-00;Name=Os02t0110900-00;Locus_id=Os02g0110900;Note=Hypothetical conserved gene.;Transcript_evidence=CU405847 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os02t0110900-00;KEGG=Os02t0110900-00
Chr02	irgsp1_rep	five_prime_UTR	596645	596645	.	+	.	Parent=Os02t0110900-00
Chr02	irgsp1_rep	CDS	596646	596892	.	+	0	Parent=Os02t0110900-00
Chr02	irgsp1_rep	CDS	597004	597076	.	+	2	Parent=Os02t0110900-00
Chr02	irgsp1_rep	CDS	608837	608879	.	+	1	Parent=Os02t0110900-00
Chr02	irgsp1_rep	three_prime_UTR	608880	609187	.	+	.	Parent=Os02t0110900-00
Chr02	irgsp1_rep	mRNA	626299	630711	.	+	.	ID=Os02t0111500-01;Name=Os02t0111500-01;Locus_id=Os02g0111500;Note=Hypothetical gene.;Transcript_evidence=AK119503 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-134-E11;Expression=AK119503;TENOR=Os02t0111500-01;KEGG=Os02t0111500-01
Chr02	irgsp1_rep	five_prime_UTR	626299	626381	.	+	.	Parent=Os02t0111500-01
Chr02	irgsp1_rep	five_prime_UTR	629392	630372	.	+	.	Parent=Os02t0111500-01
Chr02	irgsp1_rep	CDS	630373	630597	.	+	0	Parent=Os02t0111500-01
Chr02	irgsp1_rep	three_prime_UTR	630598	630711	.	+	.	Parent=Os02t0111500-01
Chr02	irgsp1_rep	mRNA	627685	630534	.	-	.	ID=Os02t0111600-01;Name=Os02t0111600-01;Locus_id=Os02g0111600;CGSNL Gene Symbol=WAK11;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 11;Oryzabase Gene Symbol Synonym(s)=OsWAK11;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK100387 (DDBJ%2C Best hit);ORF_evidence=Q4U3Z6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=EGF-type aspartate/asparagine hydroxylation site (IPR000152),Protein kinase%2C catalytic domain (IPR000719),EGF-like calcium-binding (IPR001881),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EGF-like calcium-binding%2C conserved site (IPR018097);NIAS_FLcDNA=J023085M03;Oryzabase=6911;Expression=AK100387;TENOR=Os02t0111600-01;KEGG=Os02t0111600-01
Chr02	irgsp1_rep	five_prime_UTR	630495	630534	.	-	.	Parent=Os02t0111600-01
Chr02	irgsp1_rep	CDS	629612	630494	.	-	0	Parent=Os02t0111600-01
Chr02	irgsp1_rep	CDS	629339	629509	.	-	2	Parent=Os02t0111600-01
Chr02	irgsp1_rep	CDS	627825	628984	.	-	2	Parent=Os02t0111600-01
Chr02	irgsp1_rep	three_prime_UTR	627685	627824	.	-	.	Parent=Os02t0111600-01
Chr02	irgsp1_rep	mRNA	633586	635778	.	+	.	ID=Os02t0111700-01;Name=Os02t0111700-01;Locus_id=Os02g0111700;Note=Similar to 60S ribosomal protein L37-A (L37-1).;Transcript_evidence=AK058280 (DDBJ%2C Best hit);ORF_evidence=A2X009 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L37e (IPR001569),Ribosomal protein L37ae/L37e%2C N-terminal (IPR011331),Ribosomal protein%2C zinc-binding domain (IPR011332),Ribosomal protein L37e%2C conserved site (IPR018267);NIAS_FLcDNA=001-013-C10;Expression=AK058280;TENOR=Os02t0111700-01;KEGG=Os02t0111700-01
Chr02	irgsp1_rep	five_prime_UTR	633586	633641	.	+	.	Parent=Os02t0111700-01
Chr02	irgsp1_rep	CDS	633642	633644	.	+	0	Parent=Os02t0111700-01
Chr02	irgsp1_rep	CDS	633728	633863	.	+	0	Parent=Os02t0111700-01
Chr02	irgsp1_rep	CDS	635356	635457	.	+	2	Parent=Os02t0111700-01
Chr02	irgsp1_rep	CDS	635565	635608	.	+	2	Parent=Os02t0111700-01
Chr02	irgsp1_rep	three_prime_UTR	635609	635778	.	+	.	Parent=Os02t0111700-01
Chr02	irgsp1_rep	mRNA	637013	640452	.	-	.	ID=Os02t0111800-02;Name=Os02t0111800-02;Locus_id=Os02g0111800;Oryzabase Gene Symbol Synonym(s)=OsCLVATA%2C CLVATA;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK110271 (DDBJ%2C Best hit),AK111191 (DDBJ%2C Best hit);ORF_evidence=A2X010 (UniProt);NIAS_FLcDNA=002-163-C10,002-178-B07;Oryzabase=21680;Expression=AK110271;TENOR=Os02t0111800-02;KEGG=Os02t0111800-02
Chr02	irgsp1_rep	five_prime_UTR	640264	640452	.	-	.	Parent=Os02t0111800-02
Chr02	irgsp1_rep	CDS	637141	640263	.	-	0	Parent=Os02t0111800-02
Chr02	irgsp1_rep	three_prime_UTR	637013	637140	.	-	.	Parent=Os02t0111800-02
Chr02	irgsp1_rep	mRNA	646112	649305	.	+	.	ID=Os02t0111900-01;Name=Os02t0111900-01;Locus_id=Os02g0111900;Note=DEAD-like helicase%2C N-terminal domain containing protein.;Transcript_evidence=AK119353 (DDBJ%2C Best hit);ORF_evidence=A2X011 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),DEAD/DEAH-box helicase%2C putative (IPR018973);NIAS_FLcDNA=001-131-F05;Expression=AK119353;TENOR=Os02t0111900-01;KEGG=Os02t0111900-01
Chr02	irgsp1_rep	five_prime_UTR	646112	646298	.	+	.	Parent=Os02t0111900-01
Chr02	irgsp1_rep	CDS	646299	649082	.	+	0	Parent=Os02t0111900-01
Chr02	irgsp1_rep	three_prime_UTR	649083	649305	.	+	.	Parent=Os02t0111900-01
Chr02	irgsp1_rep	mRNA	650638	651300	.	-	.	ID=Os02t0112000-00;Name=Os02t0112000-00;Locus_id=Os02g0112000;Note=Hypothetical protein.;Transcript_evidence=AK370830 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0112000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	651278	651300	.	-	.	Parent=Os02t0112000-00
Chr02	irgsp1_rep	CDS	651125	651277	.	-	0	Parent=Os02t0112000-00
Chr02	irgsp1_rep	CDS	650829	650984	.	-	0	Parent=Os02t0112000-00
Chr02	irgsp1_rep	CDS	650694	650702	.	-	0	Parent=Os02t0112000-00
Chr02	irgsp1_rep	three_prime_UTR	650638	650693	.	-	.	Parent=Os02t0112000-00
Chr02	irgsp1_rep	mRNA	655324	657243	.	+	.	ID=Os02t0112100-01;Name=Os02t0112100-01;Locus_id=Os02g0112100;RAP-DB Gene Symbol Synonym(s)=NRT2.1%2C OsNRT2.1%2C OsNRT2.2;RAP-DB Gene Name Synonym(s)=HIGH AFFINITY NITRATE TRANSPORTER%2C high-affinity nitrate transporter 2.1;CGSNL Gene Symbol=NRT2.1;CGSNL Gene Name=HIGH AFFINITY NITRATE TRANSPORTER;Oryzabase Gene Symbol Synonym(s)=OsNRT2.1%2C OsNRT2.2;Oryzabase Gene Name Synonym(s)=high-affinity nitrate transporter 2.1;Note=High-affinity nitrate transporter%2C Nitrate uptake%2C Nitrate transport;Transcript_evidence=AB008519;ORF_evidence=P0DKG9;GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral component of membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),Major facilitator superfamily domain (IPR020846);Manual Curation=November 2%2C 2016;Literature_PMID=21486304,21220781,20862512;Oryzabase=6247;TENOR=Os02t0112100-00
Chr02	irgsp1_rep	five_prime_UTR	655324	655419	.	+	.	Parent=Os02t0112100-01
Chr02	irgsp1_rep	CDS	655420	657021	.	+	0	Parent=Os02t0112100-01
Chr02	irgsp1_rep	three_prime_UTR	657022	657243	.	+	.	Parent=Os02t0112100-01
Chr02	irgsp1_rep	mRNA	667264	669053	.	-	.	ID=Os02t0112600-01;Name=Os02t0112600-01;Locus_id=Os02g0112600;RAP-DB Gene Symbol Synonym(s)=NRT2.2%2C OsNRT2.2%2C OsNRT2.1;RAP-DB Gene Name Synonym(s)=HIGH AFFINITY NITRATE TRANSPORTER%2C high-affinity nitrate transporter 2.2;CGSNL Gene Symbol=NRT2.2;CGSNL Gene Name=HIGH AFFINITY NITRATE TRANSPORTER;Oryzabase Gene Symbol Synonym(s)=OsNRT2.2%2C OsNRT2.1;Oryzabase Gene Name Synonym(s)=high-affinity nitrate transporter 2.2;Note=High-affinity nitrate transporter%2C Nitrate uptake%2C Nitrate transport;Transcript_evidence=AK109733;ORF_evidence=P0DKH0;GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral component of membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=002-146-C04;Manual Curation=November 2%2C 2016;Literature_PMID=21486304,21220781,20862512;Oryzabase=6248;Expression=AK109733;TENOR=Os02t0112600-01;KEGG=Os02t0112600-01
Chr02	irgsp1_rep	five_prime_UTR	668963	669053	.	-	.	Parent=Os02t0112600-01
Chr02	irgsp1_rep	CDS	667361	668962	.	-	0	Parent=Os02t0112600-01
Chr02	irgsp1_rep	three_prime_UTR	667264	667360	.	-	.	Parent=Os02t0112600-01
Chr02	irgsp1_rep	mRNA	679468	697321	.	-	.	ID=Os02t0112900-00;Name=Os02t0112900-00;Locus_id=Os02g0112900;Oryzabase Gene Symbol Synonym(s)=OsGABA-T%2C GABA-T;Oryzabase Gene Name Synonym(s)=gamma-aminobutyrate transaminase;Note=Similar to Viroid RNA-binding protein (Fragment).;Transcript_evidence=AF324485 (DDBJ%2C Best hit);ORF_evidence=Q01K11 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: transaminase activity (GO:0008483),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferase class-III (IPR005814),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);Oryzabase=20175;Expression=AF324485;TENOR=Os02t0112900-00;KEGG=Os02t0112900-00
Chr02	irgsp1_rep	five_prime_UTR	697302	697321	.	-	.	Parent=Os02t0112900-00
Chr02	irgsp1_rep	CDS	697216	697301	.	-	0	Parent=Os02t0112900-00
Chr02	irgsp1_rep	CDS	696982	697066	.	-	1	Parent=Os02t0112900-00
Chr02	irgsp1_rep	CDS	695241	695313	.	-	0	Parent=Os02t0112900-00
Chr02	irgsp1_rep	CDS	687203	687300	.	-	2	Parent=Os02t0112900-00
Chr02	irgsp1_rep	CDS	686936	687028	.	-	0	Parent=Os02t0112900-00
Chr02	irgsp1_rep	CDS	685118	685191	.	-	0	Parent=Os02t0112900-00
Chr02	irgsp1_rep	CDS	684551	684589	.	-	1	Parent=Os02t0112900-00
Chr02	irgsp1_rep	CDS	684347	684435	.	-	1	Parent=Os02t0112900-00
Chr02	irgsp1_rep	CDS	684197	684273	.	-	2	Parent=Os02t0112900-00
Chr02	irgsp1_rep	CDS	684044	684118	.	-	0	Parent=Os02t0112900-00
Chr02	irgsp1_rep	CDS	683351	683398	.	-	0	Parent=Os02t0112900-00
Chr02	irgsp1_rep	CDS	683023	683106	.	-	0	Parent=Os02t0112900-00
Chr02	irgsp1_rep	CDS	682846	682933	.	-	0	Parent=Os02t0112900-00
Chr02	irgsp1_rep	CDS	682638	682716	.	-	2	Parent=Os02t0112900-00
Chr02	irgsp1_rep	CDS	682446	682539	.	-	1	Parent=Os02t0112900-00
Chr02	irgsp1_rep	CDS	682241	682319	.	-	0	Parent=Os02t0112900-00
Chr02	irgsp1_rep	CDS	679775	679890	.	-	2	Parent=Os02t0112900-00
Chr02	irgsp1_rep	CDS	679597	679671	.	-	0	Parent=Os02t0112900-00
Chr02	irgsp1_rep	three_prime_UTR	679468	679596	.	-	.	Parent=Os02t0112900-00
Chr02	irgsp1_rep	mRNA	712586	715144	.	+	.	ID=Os02t0113200-00;Name=Os02t0113200-00;Locus_id=Os02g0113200;CGSNL Gene Symbol=CYP51H5;CGSNL Gene Name=P-450 51H5;Oryzabase Gene Symbol Synonym(s)=OsCYP51H5;Oryzabase Gene Name Synonym(s)=CytoChrome P450 51H5;Note=Similar to CytoChrome P450-like protein.;Transcript_evidence=DQ680853 (DDBJ);ORF_evidence=Q84YE6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: monooxygenase activity (GO:0004497),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group IV (IPR002403),CytoChrome P450%2C conserved site (IPR017972);Oryzabase=17994;TENOR=Os02t0113200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	712586	713035	.	+	0	Parent=Os02t0113200-00
Chr02	irgsp1_rep	CDS	714120	715121	.	+	0	Parent=Os02t0113200-00
Chr02	irgsp1_rep	three_prime_UTR	715122	715144	.	+	.	Parent=Os02t0113200-00
Chr02	irgsp1_rep	mRNA	717857	719511	.	+	.	ID=Os02t0113300-00;Name=Os02t0113300-00;Locus_id=Os02g0113300;Note=Domain of unknown function DUF1618 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001045662.1 (RefSeq);InterPro=Domain of unknown function DUF1618 (IPR011676);TENOR=Os02t0113300-00
Chr02	irgsp1_rep	CDS	717857	719252	.	+	0	Parent=Os02t0113300-00
Chr02	irgsp1_rep	CDS	719453	719511	.	+	2	Parent=Os02t0113300-00
Chr02	irgsp1_rep	mRNA	726578	734044	.	+	.	ID=Os02t0113400-01;Name=Os02t0113400-01;Locus_id=Os02g0113400;Note=Protein of unknown function DUF544 family protein.;Transcript_evidence=AK069550 (DDBJ%2C Best hit);ORF_evidence=B8AGH2 (UniProt);NIAS_FLcDNA=J023024B12;Expression=AK069550;TENOR=Os02t0113400-01;KEGG=Os02t0113400-01
Chr02	irgsp1_rep	five_prime_UTR	726578	726749	.	+	.	Parent=Os02t0113400-01
Chr02	irgsp1_rep	CDS	726750	727105	.	+	0	Parent=Os02t0113400-01
Chr02	irgsp1_rep	CDS	727899	728048	.	+	1	Parent=Os02t0113400-01
Chr02	irgsp1_rep	CDS	728510	728635	.	+	1	Parent=Os02t0113400-01
Chr02	irgsp1_rep	CDS	728726	729482	.	+	1	Parent=Os02t0113400-01
Chr02	irgsp1_rep	CDS	729573	729697	.	+	0	Parent=Os02t0113400-01
Chr02	irgsp1_rep	CDS	729776	729815	.	+	1	Parent=Os02t0113400-01
Chr02	irgsp1_rep	three_prime_UTR	729816	729818	.	+	.	Parent=Os02t0113400-01
Chr02	irgsp1_rep	three_prime_UTR	733358	734044	.	+	.	Parent=Os02t0113400-01
Chr02	irgsp1_rep	mRNA	743366	745313	.	+	.	ID=Os02t0113800-01;Name=Os02t0113800-01;Locus_id=Os02g0113800;Note=Domain of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK072590 (DDBJ%2C Best hit);ORF_evidence=A2X022 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=J023131L22;Expression=AK072590;TENOR=Os02t0113800-01;KEGG=Os02t0113800-01
Chr02	irgsp1_rep	five_prime_UTR	743366	743466	.	+	.	Parent=Os02t0113800-01
Chr02	irgsp1_rep	CDS	743467	744868	.	+	0	Parent=Os02t0113800-01
Chr02	irgsp1_rep	CDS	745066	745127	.	+	2	Parent=Os02t0113800-01
Chr02	irgsp1_rep	three_prime_UTR	745128	745313	.	+	.	Parent=Os02t0113800-01
Chr02	irgsp1_rep	mRNA	745924	748174	.	+	.	ID=Os02t0113900-00;Name=Os02t0113900-00;Locus_id=Os02g0113900;Note=Domain of unknown function DUF1618 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001172774.1 (RefSeq);InterPro=Domain of unknown function DUF1618 (IPR011676);TENOR=Os02t0113900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	745924	746262	.	+	0	Parent=Os02t0113900-00
Chr02	irgsp1_rep	CDS	746497	747343	.	+	0	Parent=Os02t0113900-00
Chr02	irgsp1_rep	CDS	748077	748174	.	+	2	Parent=Os02t0113900-00
Chr02	irgsp1_rep	mRNA	748721	752339	.	-	.	ID=Os02t0114000-01;Name=Os02t0114000-01;Locus_id=Os02g0114000;Note=Bromodomain domain containing protein.;Transcript_evidence=AK240714 (DDBJ%2C Best hit);ORF_evidence=Q6Z7C5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Bromodomain (IPR001487);NIAS_FLcDNA=J043022H07;TENOR=Os02t0114000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	752025	752339	.	-	0	Parent=Os02t0114000-01
Chr02	irgsp1_rep	CDS	751380	751889	.	-	0	Parent=Os02t0114000-01
Chr02	irgsp1_rep	CDS	750123	750371	.	-	0	Parent=Os02t0114000-01
Chr02	irgsp1_rep	CDS	749122	749799	.	-	0	Parent=Os02t0114000-01
Chr02	irgsp1_rep	three_prime_UTR	748721	749121	.	-	.	Parent=Os02t0114000-01
Chr02	irgsp1_rep	mRNA	755937	759433	.	-	.	ID=Os02t0114033-00;Name=Os02t0114033-00;Locus_id=Os02g0114033;Note=Glutamine-Leucine-Glutamine%2C QLQ domain containing protein.;Transcript_evidence=tplb0057e06 (Wheat FLcDNA);ORF_evidence=Q6Z7C5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides (GO:0016818);InterPro=Glutamine-Leucine-Glutamine%2C QLQ (IPR014978);TENOR=Os02t0114033-00
Chr02	irgsp1_rep	five_prime_UTR	759162	759433	.	-	.	Parent=Os02t0114033-00
Chr02	irgsp1_rep	CDS	757398	758672	.	-	0	Parent=Os02t0114033-00
Chr02	irgsp1_rep	CDS	755937	757259	.	-	0	Parent=Os02t0114033-00
Chr02	irgsp1_rep	mRNA	759110	759589	.	+	.	ID=Os02t0114066-00;Name=Os02t0114066-00;Locus_id=Os02g0114066;Note=Non-protein coding transcript.;Transcript_evidence=EU948018 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0114066-00
Chr02	irgsp1_rep	exon	759110	759589	.	+	.	Parent=Os02t0114066-00
Chr02	irgsp1_rep	mRNA	763409	765119	.	-	.	ID=Os02t0114100-00;Name=Os02t0114100-00;Locus_id=Os02g0114100;Note=Protein of unknown function DUF6%2C transmembrane domain containing protein.;Transcript_evidence=EU961623 (DDBJ);ORF_evidence=NP_001150116.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);TENOR=Os02t0114100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	765024	765119	.	-	.	Parent=Os02t0114100-00
Chr02	irgsp1_rep	CDS	764809	765023	.	-	0	Parent=Os02t0114100-00
Chr02	irgsp1_rep	CDS	763980	764717	.	-	1	Parent=Os02t0114100-00
Chr02	irgsp1_rep	CDS	763409	763616	.	-	1	Parent=Os02t0114100-00
Chr02	irgsp1_rep	mRNA	763935	766016	.	+	.	ID=Os02t0114150-01;Name=Os02t0114150-01;Locus_id=Os02g0114150;Note=Hypothetical gene.;Transcript_evidence=AK106679 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-114-B01;Expression=AK106679;TENOR=Os02t0114150-01;KEGG=Os02t0114150-01
Chr02	irgsp1_rep	five_prime_UTR	763935	763936	.	+	.	Parent=Os02t0114150-01
Chr02	irgsp1_rep	CDS	763937	764248	.	+	0	Parent=Os02t0114150-01
Chr02	irgsp1_rep	three_prime_UTR	764249	766016	.	+	.	Parent=Os02t0114150-01
Chr02	irgsp1_rep	mRNA	767270	772098	.	-	.	ID=Os02t0114200-01;Name=Os02t0114200-01;Locus_id=Os02g0114200;CGSNL Gene Symbol=CPD3;CGSNL Gene Name=TYPE III CARBOXYPEPTIDASE;Oryzabase Gene Symbol Synonym(s)=cbp3%2C R-CPD3%2C OsSCP6%2C SCP6;Oryzabase Gene Name Synonym(s)=type III carboxypeptidase%2C type III CPD%2C R-CPD3%2C serine carboxypeptidase III%2C carboxypeptidase III%2C Serine carboxypeptidase 6;Note=Serine carboxypeptidase III precursor (EC 3.4.16.5).;Transcript_evidence=AK073508 (DDBJ%2C Best hit),AK061078 (DDBJ%2C Best hit);ORF_evidence=P37891 (UniProt);NIAS_FLcDNA=J033044O22,006-206-E09;Oryzabase=13756;TENOR=Os02t0114200-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	772088	772098	.	-	.	Parent=Os02t0114200-01
Chr02	irgsp1_rep	CDS	771789	772087	.	-	0	Parent=Os02t0114200-01
Chr02	irgsp1_rep	CDS	771490	771658	.	-	1	Parent=Os02t0114200-01
Chr02	irgsp1_rep	CDS	770611	770730	.	-	0	Parent=Os02t0114200-01
Chr02	irgsp1_rep	CDS	769860	770003	.	-	0	Parent=Os02t0114200-01
Chr02	irgsp1_rep	CDS	769624	769774	.	-	0	Parent=Os02t0114200-01
Chr02	irgsp1_rep	CDS	769315	769403	.	-	2	Parent=Os02t0114200-01
Chr02	irgsp1_rep	CDS	768971	769229	.	-	0	Parent=Os02t0114200-01
Chr02	irgsp1_rep	CDS	768025	768158	.	-	2	Parent=Os02t0114200-01
Chr02	irgsp1_rep	CDS	767490	767627	.	-	0	Parent=Os02t0114200-01
Chr02	irgsp1_rep	three_prime_UTR	767270	767489	.	-	.	Parent=Os02t0114200-01
Chr02	irgsp1_rep	mRNA	767270	769083	.	-	.	ID=Os02t0114200-02;Name=Os02t0114200-02;Locus_id=Os02g0114200;CGSNL Gene Symbol=CPD3;CGSNL Gene Name=TYPE III CARBOXYPEPTIDASE;Oryzabase Gene Symbol Synonym(s)=cbp3%2C R-CPD3%2C OsSCP6%2C SCP6;Oryzabase Gene Name Synonym(s)=type III carboxypeptidase%2C type III CPD%2C R-CPD3%2C serine carboxypeptidase III%2C carboxypeptidase III%2C Serine carboxypeptidase 6;Note=Similar to Serine carboxypeptidase 3.;Transcript_evidence=AK103982 (DDBJ%2C Best hit);ORF_evidence=P37891 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=001-017-D06;Oryzabase=13756;Expression=AK103982;TENOR=Os02t0114200-02;KEGG=Os02t0114200-02 (EC:3.4.16.5)
Chr02	irgsp1_rep	five_prime_UTR	769083	769083	.	-	.	Parent=Os02t0114200-02
Chr02	irgsp1_rep	CDS	768971	769082	.	-	0	Parent=Os02t0114200-02
Chr02	irgsp1_rep	CDS	768025	768158	.	-	2	Parent=Os02t0114200-02
Chr02	irgsp1_rep	CDS	767490	767627	.	-	0	Parent=Os02t0114200-02
Chr02	irgsp1_rep	three_prime_UTR	767270	767489	.	-	.	Parent=Os02t0114200-02
Chr02	irgsp1_rep	mRNA	775715	776637	.	+	.	ID=Os02t0114300-00;Name=Os02t0114300-00;Locus_id=Os02g0114300;Note=Hypothetical protein.;Transcript_evidence=AK366781 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0114300-00
Chr02	irgsp1_rep	five_prime_UTR	775715	776169	.	+	.	Parent=Os02t0114300-00
Chr02	irgsp1_rep	CDS	776170	776412	.	+	0	Parent=Os02t0114300-00
Chr02	irgsp1_rep	three_prime_UTR	776413	776637	.	+	.	Parent=Os02t0114300-00
Chr02	irgsp1_rep	mRNA	777582	778268	.	-	.	ID=Os02t0114400-00;Name=Os02t0114400-00;Locus_id=Os02g0114400;Oryzabase Gene Symbol Synonym(s)=GPAT;Oryzabase Gene Name Synonym(s)=glycerol-3-phosphate acyltransferase;Note=Similar to glycerol-3-phosphate acyltransferase 8.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001147442.1 (RefSeq);Oryzabase=21985;TENOR=Os02t0114400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	777582	778268	.	-	0	Parent=Os02t0114400-00
Chr02	irgsp1_rep	mRNA	780669	785676	.	-	.	ID=Os02t0114600-01;Name=Os02t0114600-01;Locus_id=Os02g0114600;Oryzabase Gene Symbol Synonym(s)=OsFbox060%2C OsFbox60%2C Os_F0125;Oryzabase Gene Name Synonym(s)=F-box protein 60;Note=Kelch-type beta propeller domain containing protein.;Transcript_evidence=AK062579 (DDBJ%2C Best hit);ORF_evidence=Q6Z7B9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Kelch repeat type 1 (IPR006652),Galactose oxidase%2C beta-propeller (IPR015916),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=001-047-H08;Oryzabase=16858;Expression=AK062579;TENOR=Os02t0114600-01;KEGG=Os02t0114600-01
Chr02	irgsp1_rep	five_prime_UTR	785498	785676	.	-	.	Parent=Os02t0114600-01
Chr02	irgsp1_rep	five_prime_UTR	782172	782179	.	-	.	Parent=Os02t0114600-01
Chr02	irgsp1_rep	CDS	781684	782171	.	-	0	Parent=Os02t0114600-01
Chr02	irgsp1_rep	CDS	780984	781578	.	-	1	Parent=Os02t0114600-01
Chr02	irgsp1_rep	three_prime_UTR	780669	780983	.	-	.	Parent=Os02t0114600-01
Chr02	irgsp1_rep	mRNA	780728	785217	.	-	.	ID=Os02t0114600-02;Name=Os02t0114600-02;Locus_id=Os02g0114600;Oryzabase Gene Symbol Synonym(s)=OsFbox060%2C OsFbox60%2C Os_F0125;Oryzabase Gene Name Synonym(s)=F-box protein 60;Note=Kelch-type beta propeller domain containing protein.;Transcript_evidence=AK073957 (DDBJ%2C Best hit);ORF_evidence=Q6Z7B9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Kelch repeat type 1 (IPR006652),Galactose oxidase%2C beta-propeller (IPR015916),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033076O03;Oryzabase=16858;Expression=AK073957;TENOR=Os02t0114600-02;KEGG=Os02t0114600-02
Chr02	irgsp1_rep	five_prime_UTR	784945	785217	.	-	.	Parent=Os02t0114600-02
Chr02	irgsp1_rep	five_prime_UTR	782172	782179	.	-	.	Parent=Os02t0114600-02
Chr02	irgsp1_rep	CDS	781684	782171	.	-	0	Parent=Os02t0114600-02
Chr02	irgsp1_rep	CDS	780984	781578	.	-	1	Parent=Os02t0114600-02
Chr02	irgsp1_rep	three_prime_UTR	780728	780983	.	-	.	Parent=Os02t0114600-02
Chr02	irgsp1_rep	mRNA	785945	789191	.	+	.	ID=Os02t0114700-01;Name=Os02t0114700-01;Locus_id=Os02g0114700;Note=Similar to Phosphorylation regulatory protein HP-10.;Transcript_evidence=AK102050 (DDBJ%2C Best hit);ORF_evidence=A2X031 (UniProt);InterPro=Nucleotide binding protein%2C PINc (IPR006596),Nin one binding (NOB1) Zn-ribbon-like (IPR014881),D-site 20S pre-rRNA nuclease (IPR017117);NIAS_FLcDNA=J033082B02;Expression=AK102050;TENOR=Os02t0114700-01;KEGG=Os02t0114700-01
Chr02	irgsp1_rep	five_prime_UTR	785945	785992	.	+	.	Parent=Os02t0114700-01
Chr02	irgsp1_rep	CDS	785993	786359	.	+	0	Parent=Os02t0114700-01
Chr02	irgsp1_rep	CDS	786773	787703	.	+	2	Parent=Os02t0114700-01
Chr02	irgsp1_rep	CDS	787807	787975	.	+	1	Parent=Os02t0114700-01
Chr02	irgsp1_rep	CDS	788472	788588	.	+	0	Parent=Os02t0114700-01
Chr02	irgsp1_rep	CDS	788815	788961	.	+	0	Parent=Os02t0114700-01
Chr02	irgsp1_rep	three_prime_UTR	788962	789191	.	+	.	Parent=Os02t0114700-01
Chr02	irgsp1_rep	mRNA	789597	790139	.	-	.	ID=Os02t0114800-00;Name=Os02t0114800-00;Locus_id=Os02g0114800;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001045671.1 (RefSeq);TENOR=Os02t0114800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	789597	790139	.	-	0	Parent=Os02t0114800-00
Chr02	irgsp1_rep	mRNA	794820	795082	.	-	.	ID=Os02t0114900-00;Name=Os02t0114900-00;Locus_id=Os02g0114900;Oryzabase Gene Symbol Synonym(s)=OsWD40-34%2C OsRUP;Note=Non-protein coding transcript.;Transcript_evidence=CT835316 (DDBJ%2C Best hit);ORF_evidence=NONE;Oryzabase=10715;TENOR=Os02t0114900-00
Chr02	irgsp1_rep	exon	794820	795082	.	-	.	Parent=Os02t0114900-00
Chr02	irgsp1_rep	mRNA	818981	824539	.	+	.	ID=Os02t0115600-01;Name=Os02t0115600-01;Locus_id=Os02g0115600;Note=S1%2C RNA binding domain containing protein.;Transcript_evidence=AK067366 (DDBJ%2C Best hit);ORF_evidence=XP_002451381.1 (RefSeq);GO=Molecular Function: RNA binding (GO:0003723);InterPro=Ribosomal protein S1%2C RNA-binding domain (IPR003029),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),RNA-binding domain%2C S1 (IPR022967);NIAS_FLcDNA=J013106A17;Expression=AK067366;TENOR=Os02t0115600-01;KEGG=Os02t0115600-01
Chr02	irgsp1_rep	five_prime_UTR	818981	819021	.	+	.	Parent=Os02t0115600-01
Chr02	irgsp1_rep	CDS	819022	819264	.	+	0	Parent=Os02t0115600-01
Chr02	irgsp1_rep	CDS	819996	820761	.	+	0	Parent=Os02t0115600-01
Chr02	irgsp1_rep	CDS	820846	820920	.	+	2	Parent=Os02t0115600-01
Chr02	irgsp1_rep	CDS	820995	821112	.	+	2	Parent=Os02t0115600-01
Chr02	irgsp1_rep	CDS	821328	821445	.	+	1	Parent=Os02t0115600-01
Chr02	irgsp1_rep	CDS	821644	821742	.	+	0	Parent=Os02t0115600-01
Chr02	irgsp1_rep	CDS	821835	822134	.	+	0	Parent=Os02t0115600-01
Chr02	irgsp1_rep	CDS	822211	822318	.	+	0	Parent=Os02t0115600-01
Chr02	irgsp1_rep	CDS	822443	822514	.	+	0	Parent=Os02t0115600-01
Chr02	irgsp1_rep	CDS	822580	822666	.	+	0	Parent=Os02t0115600-01
Chr02	irgsp1_rep	CDS	822887	822958	.	+	0	Parent=Os02t0115600-01
Chr02	irgsp1_rep	CDS	823063	823152	.	+	0	Parent=Os02t0115600-01
Chr02	irgsp1_rep	CDS	823795	823902	.	+	0	Parent=Os02t0115600-01
Chr02	irgsp1_rep	CDS	824015	824083	.	+	0	Parent=Os02t0115600-01
Chr02	irgsp1_rep	CDS	824177	824251	.	+	0	Parent=Os02t0115600-01
Chr02	irgsp1_rep	three_prime_UTR	824252	824539	.	+	.	Parent=Os02t0115600-01
Chr02	irgsp1_rep	mRNA	820696	824520	.	+	.	ID=Os02t0115600-02;Name=Os02t0115600-02;Locus_id=Os02g0115600;Note=Nucleic acid-binding%2C OB-fold-like domain containing protein.;Transcript_evidence=AK105772 (DDBJ%2C Best hit);ORF_evidence=XP_002451381.1 (RefSeq);GO=Molecular Function: RNA binding (GO:0003723);InterPro=Ribosomal protein S1%2C RNA-binding domain (IPR003029),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),RNA-binding domain%2C S1 (IPR022967);NIAS_FLcDNA=001-202-E12;Expression=AK105772;TENOR=Os02t0115600-02;KEGG=Os02t0115600-02
Chr02	irgsp1_rep	five_prime_UTR	820696	820697	.	+	.	Parent=Os02t0115600-02
Chr02	irgsp1_rep	CDS	820698	820761	.	+	0	Parent=Os02t0115600-02
Chr02	irgsp1_rep	CDS	820846	820920	.	+	2	Parent=Os02t0115600-02
Chr02	irgsp1_rep	CDS	820995	821112	.	+	2	Parent=Os02t0115600-02
Chr02	irgsp1_rep	CDS	821328	821445	.	+	1	Parent=Os02t0115600-02
Chr02	irgsp1_rep	CDS	821644	821742	.	+	0	Parent=Os02t0115600-02
Chr02	irgsp1_rep	CDS	821835	822134	.	+	0	Parent=Os02t0115600-02
Chr02	irgsp1_rep	CDS	822211	822318	.	+	0	Parent=Os02t0115600-02
Chr02	irgsp1_rep	CDS	822443	822514	.	+	0	Parent=Os02t0115600-02
Chr02	irgsp1_rep	CDS	822580	822666	.	+	0	Parent=Os02t0115600-02
Chr02	irgsp1_rep	CDS	822887	822958	.	+	0	Parent=Os02t0115600-02
Chr02	irgsp1_rep	CDS	823063	823152	.	+	0	Parent=Os02t0115600-02
Chr02	irgsp1_rep	CDS	823795	823902	.	+	0	Parent=Os02t0115600-02
Chr02	irgsp1_rep	CDS	824015	824083	.	+	0	Parent=Os02t0115600-02
Chr02	irgsp1_rep	CDS	824177	824251	.	+	0	Parent=Os02t0115600-02
Chr02	irgsp1_rep	three_prime_UTR	824252	824520	.	+	.	Parent=Os02t0115600-02
Chr02	irgsp1_rep	mRNA	819009	824265	.	-	.	ID=Os02t0115650-00;Name=Os02t0115650-00;Locus_id=Os02g0115650;Note=Hypothetical protein.;Transcript_evidence=tplb0039m17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0115650-00
Chr02	irgsp1_rep	five_prime_UTR	824175	824265	.	-	.	Parent=Os02t0115650-00
Chr02	irgsp1_rep	five_prime_UTR	824028	824081	.	-	.	Parent=Os02t0115650-00
Chr02	irgsp1_rep	five_prime_UTR	823793	823909	.	-	.	Parent=Os02t0115650-00
Chr02	irgsp1_rep	five_prime_UTR	823061	823150	.	-	.	Parent=Os02t0115650-00
Chr02	irgsp1_rep	five_prime_UTR	822884	822956	.	-	.	Parent=Os02t0115650-00
Chr02	irgsp1_rep	five_prime_UTR	822578	822663	.	-	.	Parent=Os02t0115650-00
Chr02	irgsp1_rep	five_prime_UTR	822437	822512	.	-	.	Parent=Os02t0115650-00
Chr02	irgsp1_rep	five_prime_UTR	822211	822312	.	-	.	Parent=Os02t0115650-00
Chr02	irgsp1_rep	five_prime_UTR	821834	822134	.	-	.	Parent=Os02t0115650-00
Chr02	irgsp1_rep	five_prime_UTR	821642	821741	.	-	.	Parent=Os02t0115650-00
Chr02	irgsp1_rep	five_prime_UTR	821321	821443	.	-	.	Parent=Os02t0115650-00
Chr02	irgsp1_rep	five_prime_UTR	820971	821105	.	-	.	Parent=Os02t0115650-00
Chr02	irgsp1_rep	five_prime_UTR	820178	820707	.	-	.	Parent=Os02t0115650-00
Chr02	irgsp1_rep	CDS	820000	820177	.	-	0	Parent=Os02t0115650-00
Chr02	irgsp1_rep	CDS	819009	819269	.	-	2	Parent=Os02t0115650-00
Chr02	irgsp1_rep	mRNA	825046	827640	.	-	.	ID=Os02t0115700-01;Name=Os02t0115700-01;Locus_id=Os02g0115700;CGSNL Gene Symbol=CATA;CGSNL Gene Name=CATALASE A;Oryzabase Gene Symbol Synonym(s)=CATA1%2C Cat A1*%2C OSCAT-A%2C Cat2%2C CatA1%2C CAT-A%2C OsCatA%2C OsCAT%2C CAT%2C catA%2C OSCATA%2C OsCATc%2C OsCATA%2C OsCAT1A%2C CAT1;Oryzabase Gene Name Synonym(s)=CATALASE A%2C Catalase-2*%2C Catalase-Al (cDNA clone)%2C Catalase isozyme A;Note=Catalase isozyme A (EC 1.11.1.6) (CAT-A).;Transcript_evidence=AK065094 (DDBJ%2C Best hit),AK099231 (DDBJ%2C Best hit),AK099923 (DDBJ%2C Best hit);ORF_evidence=B8AGH7 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalase activity (GO:0004096),Molecular Function: heme binding (GO:0020037);InterPro=Catalase haem-binding site (IPR002226),Catalase-related immune responsive (IPR010582),Catalase%2C N-terminal (IPR011614),Catalase%2C mono-functional%2C haem-containing (IPR018028),Catalase domain (IPR020835),Catalase active site (IPR024708);NIAS_FLcDNA=J013001M08,J013095I04,J013116M08;Oryzabase=8094;Expression=AK065094;TENOR=Os02t0115700-01;KEGG=Os02t0115700-01 (EC:1.11.1.6)
Chr02	irgsp1_rep	five_prime_UTR	827571	827640	.	-	.	Parent=Os02t0115700-01
Chr02	irgsp1_rep	CDS	827556	827570	.	-	0	Parent=Os02t0115700-01
Chr02	irgsp1_rep	CDS	826467	827267	.	-	0	Parent=Os02t0115700-01
Chr02	irgsp1_rep	CDS	825778	826380	.	-	0	Parent=Os02t0115700-01
Chr02	irgsp1_rep	CDS	825369	825428	.	-	0	Parent=Os02t0115700-01
Chr02	irgsp1_rep	three_prime_UTR	825046	825368	.	-	.	Parent=Os02t0115700-01
Chr02	irgsp1_rep	mRNA	825083	826407	.	-	.	ID=Os02t0115700-02;Name=Os02t0115700-02;Locus_id=Os02g0115700;CGSNL Gene Symbol=CATA;CGSNL Gene Name=CATALASE A;Oryzabase Gene Symbol Synonym(s)=CATA1%2C Cat A1*%2C OSCAT-A%2C Cat2%2C CatA1%2C CAT-A%2C OsCatA%2C OsCAT%2C CAT%2C catA%2C OSCATA%2C OsCATc%2C OsCATA%2C OsCAT1A%2C CAT1;Oryzabase Gene Name Synonym(s)=CATALASE A%2C Catalase-2*%2C Catalase-Al (cDNA clone)%2C Catalase isozyme A;Note=Similar to Catalase.;Transcript_evidence=AK071061 (DDBJ%2C Best hit);ORF_evidence=B8AGH7 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalase activity (GO:0004096),Molecular Function: heme binding (GO:0020037);InterPro=Catalase haem-binding site (IPR002226),Catalase-related immune responsive (IPR010582),Catalase%2C N-terminal (IPR011614),Catalase%2C mono-functional%2C haem-containing (IPR018028),Catalase domain (IPR020835);NIAS_FLcDNA=J023079C18;Oryzabase=8094;Expression=AK071061;TENOR=Os02t0115700-02;KEGG=Os02t0115700-02 (EC:1.11.1.6)
Chr02	irgsp1_rep	five_prime_UTR	826381	826407	.	-	.	Parent=Os02t0115700-02
Chr02	irgsp1_rep	CDS	825778	826380	.	-	0	Parent=Os02t0115700-02
Chr02	irgsp1_rep	CDS	825369	825428	.	-	0	Parent=Os02t0115700-02
Chr02	irgsp1_rep	three_prime_UTR	825083	825368	.	-	.	Parent=Os02t0115700-02
Chr02	irgsp1_rep	mRNA	825041	825872	.	-	.	ID=Os02t0115700-03;Name=Os02t0115700-03;Locus_id=Os02g0115700;CGSNL Gene Symbol=CATA;CGSNL Gene Name=CATALASE A;Oryzabase Gene Symbol Synonym(s)=CATA1%2C Cat A1*%2C OSCAT-A%2C Cat2%2C CatA1%2C CAT-A%2C OsCatA%2C OsCAT%2C CAT%2C catA%2C OSCATA%2C OsCATc%2C OsCATA%2C OsCAT1A%2C CAT1;Oryzabase Gene Name Synonym(s)=CATALASE A%2C Catalase-2*%2C Catalase-Al (cDNA clone)%2C Catalase isozyme A;Note=Similar to Catalase.;Transcript_evidence=AK061923 (DDBJ%2C Best hit);ORF_evidence=B8AGH7 (UniProt);InterPro=Catalase-related immune responsive (IPR010582);NIAS_FLcDNA=001-042-B11;Oryzabase=8094;Expression=AK061923;TENOR=Os02t0115700-03;KEGG=Os02t0115700-03 (EC:1.11.1.6)
Chr02	irgsp1_rep	five_prime_UTR	825871	825872	.	-	.	Parent=Os02t0115700-03
Chr02	irgsp1_rep	CDS	825778	825870	.	-	0	Parent=Os02t0115700-03
Chr02	irgsp1_rep	CDS	825369	825428	.	-	0	Parent=Os02t0115700-03
Chr02	irgsp1_rep	three_prime_UTR	825041	825368	.	-	.	Parent=Os02t0115700-03
Chr02	irgsp1_rep	mRNA	825369	825999	.	+	.	ID=Os02t0115801-00;Name=Os02t0115801-00;Locus_id=Os02g0115801;Note=Hypothetical gene.;Transcript_evidence=AJ234405 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0115801-00;KEGG=Os02t0115801-00
Chr02	irgsp1_rep	CDS	825369	825437	.	+	0	Parent=Os02t0115801-00
Chr02	irgsp1_rep	CDS	825787	825999	.	+	0	Parent=Os02t0115801-00
Chr02	irgsp1_rep	mRNA	838779	842672	.	-	.	ID=Os02t0115900-01;Name=Os02t0115900-01;Locus_id=Os02g0115900;RAP-DB Gene Symbol Synonym(s)=BiP1%2C BiP3%2C OsBiP3;RAP-DB Gene Name Synonym(s)=Binding protein 1%2C endoplasmic reticulum (ER) chaperone BiP3;Oryzabase Gene Symbol Synonym(s)=OsBiP1%2C BiP1%2C BiP%2C Bip3%2C OsBiP3%2C BIP1/OsBIP3%2C OsMed37_2%2C Med37_2;Oryzabase Gene Name Synonym(s)=ER chaperone BiP1%2C Binding protein 1%2C binding protein%2C endosperm lumenal binding protein%2C endoplasmic reticulum (ER) chaperone BiP3%2C Polypeptide chain-binding protein%2C Mediator 37_2;Note=ER-localized chaperone HSP70%2C ER quality control for seed storage proteins during seed maturation%2C Regulation of XA21 protein stability and processing%2C Resistance to Xoo%2C;Transcript_evidence=AK119653;ORF_evidence=Q6Z7B0;InterPro=Heat shock protein 70kD%2C peptide-binding domain superfamily (IPR029047),Heat shock protein 70kD%2C C-terminal domain superfamily (IPR029048),Heat shock protein 70 family (IPR013126),Endoplasmic reticulum chaperone BIP%2C nucleotide-binding domain (IPR042050),Heat shock protein 70%2C conserved site (IPR018181);NIAS_FLcDNA=002-130-H01;Manual Curation=October 26%2C 2020;Literature_PMID=21223397,20174657,19567376;Oryzabase=10082;Expression=AK119653;TENOR=Os02t0115900-01;KEGG=Os02t0115900-01;Subcellular location=endoplasmic reticulum (GO:0005783)
Chr02	irgsp1_rep	five_prime_UTR	842526	842672	.	-	.	Parent=Os02t0115900-01
Chr02	irgsp1_rep	CDS	842477	842525	.	-	0	Parent=Os02t0115900-01
Chr02	irgsp1_rep	CDS	841489	841756	.	-	2	Parent=Os02t0115900-01
Chr02	irgsp1_rep	CDS	841189	841403	.	-	1	Parent=Os02t0115900-01
Chr02	irgsp1_rep	CDS	840855	841097	.	-	2	Parent=Os02t0115900-01
Chr02	irgsp1_rep	CDS	840078	840557	.	-	2	Parent=Os02t0115900-01
Chr02	irgsp1_rep	CDS	839828	839982	.	-	2	Parent=Os02t0115900-01
Chr02	irgsp1_rep	CDS	839638	839720	.	-	0	Parent=Os02t0115900-01
Chr02	irgsp1_rep	CDS	839048	839552	.	-	1	Parent=Os02t0115900-01
Chr02	irgsp1_rep	three_prime_UTR	838779	839047	.	-	.	Parent=Os02t0115900-01
Chr02	irgsp1_rep	mRNA	838743	842638	.	-	.	ID=Os02t0115900-02;Name=Os02t0115900-02;Locus_id=Os02g0115900;Oryzabase Gene Symbol Synonym(s)=OsBiP1%2C BiP1%2C BiP%2C Bip3%2C OsBiP3%2C BIP1/OsBIP3%2C OsMed37_2%2C Med37_2;Oryzabase Gene Name Synonym(s)=ER chaperone BiP1%2C Binding protein 1%2C binding protein%2C endosperm lumenal binding protein%2C endoplasmic reticulum (ER) chaperone BiP3%2C Polypeptide chain-binding protein%2C Mediator 37_2;Note=Endosperm lumenal binding protein.;Transcript_evidence=AK065743 (DDBJ%2C Best hit);ORF_evidence=O24182 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Heat shock protein Hsp70 (IPR001023),Heat shock protein 70 (IPR013126),Heat shock protein 70%2C conserved site (IPR018181);NIAS_FLcDNA=J013040G16;Oryzabase=10082;Expression=AK065743;TENOR=Os02t0115900-02;KEGG=Os02t0115900-02
Chr02	irgsp1_rep	five_prime_UTR	842526	842638	.	-	.	Parent=Os02t0115900-02
Chr02	irgsp1_rep	CDS	842477	842525	.	-	0	Parent=Os02t0115900-02
Chr02	irgsp1_rep	CDS	841489	841756	.	-	2	Parent=Os02t0115900-02
Chr02	irgsp1_rep	CDS	841189	841403	.	-	1	Parent=Os02t0115900-02
Chr02	irgsp1_rep	CDS	840855	841097	.	-	2	Parent=Os02t0115900-02
Chr02	irgsp1_rep	CDS	840078	840557	.	-	2	Parent=Os02t0115900-02
Chr02	irgsp1_rep	CDS	839828	839982	.	-	2	Parent=Os02t0115900-02
Chr02	irgsp1_rep	CDS	839638	839720	.	-	0	Parent=Os02t0115900-02
Chr02	irgsp1_rep	CDS	839048	839552	.	-	1	Parent=Os02t0115900-02
Chr02	irgsp1_rep	three_prime_UTR	838743	839047	.	-	.	Parent=Os02t0115900-02
Chr02	irgsp1_rep	mRNA	838743	840970	.	-	.	ID=Os02t0115900-03;Name=Os02t0115900-03;Locus_id=Os02g0115900;Oryzabase Gene Symbol Synonym(s)=OsBiP1%2C BiP1%2C BiP%2C Bip3%2C OsBiP3%2C BIP1/OsBIP3%2C OsMed37_2%2C Med37_2;Oryzabase Gene Name Synonym(s)=ER chaperone BiP1%2C Binding protein 1%2C binding protein%2C endosperm lumenal binding protein%2C endoplasmic reticulum (ER) chaperone BiP3%2C Polypeptide chain-binding protein%2C Mediator 37_2;Note=Similar to Endosperm lumenal binding protein.;Transcript_evidence=AK066006 (DDBJ%2C Best hit);ORF_evidence=O24182 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Heat shock protein Hsp70 (IPR001023),Heat shock protein 70 (IPR013126),Heat shock protein 70%2C conserved site (IPR018181);NIAS_FLcDNA=J013044D12;Oryzabase=10082;Expression=AK066006;TENOR=Os02t0115900-03;KEGG=Os02t0115900-03
Chr02	irgsp1_rep	five_prime_UTR	840970	840970	.	-	.	Parent=Os02t0115900-03
Chr02	irgsp1_rep	CDS	840855	840969	.	-	0	Parent=Os02t0115900-03
Chr02	irgsp1_rep	CDS	840078	840557	.	-	2	Parent=Os02t0115900-03
Chr02	irgsp1_rep	CDS	839828	839982	.	-	2	Parent=Os02t0115900-03
Chr02	irgsp1_rep	CDS	839638	839720	.	-	0	Parent=Os02t0115900-03
Chr02	irgsp1_rep	CDS	839048	839552	.	-	1	Parent=Os02t0115900-03
Chr02	irgsp1_rep	three_prime_UTR	838743	839047	.	-	.	Parent=Os02t0115900-03
Chr02	irgsp1_rep	mRNA	839261	841384	.	+	.	ID=Os02t0115950-00;Name=Os02t0115950-00;Locus_id=Os02g0115950;Note=Glutamate dehydrogenase%2C NAD-specific domain containing protein.;Transcript_evidence=tplb0023b01 (Wheat FLcDNA);ORF_evidence=longestORF;InterPro=Glutamate dehydrogenase%2C NAD-specific (IPR019651);TENOR=Os02t0115950-00
Chr02	irgsp1_rep	five_prime_UTR	839261	839504	.	+	.	Parent=Os02t0115950-00
Chr02	irgsp1_rep	CDS	839505	839546	.	+	0	Parent=Os02t0115950-00
Chr02	irgsp1_rep	CDS	839633	839747	.	+	0	Parent=Os02t0115950-00
Chr02	irgsp1_rep	CDS	839862	839984	.	+	2	Parent=Os02t0115950-00
Chr02	irgsp1_rep	CDS	840092	840549	.	+	2	Parent=Os02t0115950-00
Chr02	irgsp1_rep	CDS	840849	840923	.	+	0	Parent=Os02t0115950-00
Chr02	irgsp1_rep	three_prime_UTR	840924	841092	.	+	.	Parent=Os02t0115950-00
Chr02	irgsp1_rep	three_prime_UTR	841192	841384	.	+	.	Parent=Os02t0115950-00
Chr02	irgsp1_rep	mRNA	853795	859876	.	-	.	ID=Os02t0116000-01;Name=Os02t0116000-01;Locus_id=Os02g0116000;Note=Zinc finger%2C C2H2 domain containing protein.;Transcript_evidence=AK100473 (DDBJ%2C Best hit);ORF_evidence=A3A2F3 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J023093M20;TENOR=Os02t0116000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	859764	859876	.	-	.	Parent=Os02t0116000-01
Chr02	irgsp1_rep	CDS	857259	857402	.	-	0	Parent=Os02t0116000-01
Chr02	irgsp1_rep	CDS	856825	857031	.	-	0	Parent=Os02t0116000-01
Chr02	irgsp1_rep	three_prime_UTR	855926	856824	.	-	.	Parent=Os02t0116000-01
Chr02	irgsp1_rep	three_prime_UTR	855036	855697	.	-	.	Parent=Os02t0116000-01
Chr02	irgsp1_rep	three_prime_UTR	854658	854893	.	-	.	Parent=Os02t0116000-01
Chr02	irgsp1_rep	three_prime_UTR	854399	854542	.	-	.	Parent=Os02t0116000-01
Chr02	irgsp1_rep	three_prime_UTR	853795	854302	.	-	.	Parent=Os02t0116000-01
Chr02	irgsp1_rep	mRNA	857835	859421	.	-	.	ID=Os02t0116100-00;Name=Os02t0116100-00;Locus_id=Os02g0116100;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9F234 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os02t0116100-00;KEGG=Os02t0116100-00
Chr02	irgsp1_rep	CDS	857835	859421	.	-	0	Parent=Os02t0116100-00
Chr02	irgsp1_rep	mRNA	862273	864880	.	+	.	ID=Os02t0116300-01;Name=Os02t0116300-01;Locus_id=Os02g0116300;CGSNL Gene Symbol=YSL7;CGSNL Gene Name=YELLOW STRIP-LIKE GENE 7;Oryzabase Gene Symbol Synonym(s)=OsYSL7%2C OsYs4;Oryzabase Gene Name Synonym(s)=rice YSL (yellow stripe-like) gene 7%2C Probable metal-nicotianamine transporter YSL7%2C Protein YELLOW STRIPE LIKE 7%2C yellow stripe 1-like transporter 7;Note=Similar to Yellow stripe-like transporter 17.;Transcript_evidence=AK070691 (DDBJ%2C Best hit),AK100087 (DDBJ%2C Best hit);ORF_evidence=B8A2G4 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085);InterPro=Oligopeptide transporter OPT superfamily (IPR004813);NIAS_FLcDNA=J023058J05,J023003B17;Oryzabase=8365;TENOR=Os02t0116300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	862273	862385	.	+	.	Parent=Os02t0116300-01
Chr02	irgsp1_rep	CDS	862386	862734	.	+	0	Parent=Os02t0116300-01
Chr02	irgsp1_rep	CDS	862823	863078	.	+	2	Parent=Os02t0116300-01
Chr02	irgsp1_rep	CDS	863177	863311	.	+	1	Parent=Os02t0116300-01
Chr02	irgsp1_rep	CDS	863395	864721	.	+	1	Parent=Os02t0116300-01
Chr02	irgsp1_rep	three_prime_UTR	864722	864880	.	+	.	Parent=Os02t0116300-01
Chr02	irgsp1_rep	mRNA	866007	869292	.	-	.	ID=Os02t0116400-01;Name=Os02t0116400-01;Locus_id=Os02g0116400;CGSNL Gene Symbol=YSL8;CGSNL Gene Name=YELLOW STRIP-LIKE GENE 8;Oryzabase Gene Symbol Synonym(s)=OsYSL8%2C OsYs3;Oryzabase Gene Name Synonym(s)=rice YSL (yellow stripe-like) gene 8%2C Probable metal-nicotianamine transporter YSL8%2C Protein YELLOW STRIPE LIKE 8%2C yellow stripe 1-like transporter 8;Note=Oligopeptide transporter OPT superfamily protein.;Transcript_evidence=AK072347 (DDBJ%2C Best hit);ORF_evidence=Q2XPY4 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085);InterPro=Oligopeptide transporter OPT superfamily (IPR004813);NIAS_FLcDNA=J023054D10;Oryzabase=8366;Expression=AK072347;TENOR=Os02t0116400-01;KEGG=Os02t0116400-01
Chr02	irgsp1_rep	five_prime_UTR	869014	869292	.	-	.	Parent=Os02t0116400-01
Chr02	irgsp1_rep	CDS	867484	869013	.	-	0	Parent=Os02t0116400-01
Chr02	irgsp1_rep	CDS	866336	866890	.	-	0	Parent=Os02t0116400-01
Chr02	irgsp1_rep	three_prime_UTR	866007	866335	.	-	.	Parent=Os02t0116400-01
Chr02	irgsp1_rep	mRNA	870853	875665	.	+	.	ID=Os02t0116500-01;Name=Os02t0116500-01;Locus_id=Os02g0116500;Note=Similar to Protochlorophyllide reductase homologue.;Transcript_evidence=AK242790 (DDBJ%2C Best hit);ORF_evidence=Q9ZSV0 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J090057L11;TENOR=Os02t0116500-01;KEGG=Os02t0116500-01
Chr02	irgsp1_rep	five_prime_UTR	870853	870910	.	+	.	Parent=Os02t0116500-01
Chr02	irgsp1_rep	CDS	870911	871203	.	+	0	Parent=Os02t0116500-01
Chr02	irgsp1_rep	CDS	872559	872679	.	+	1	Parent=Os02t0116500-01
Chr02	irgsp1_rep	CDS	872975	873092	.	+	0	Parent=Os02t0116500-01
Chr02	irgsp1_rep	CDS	873218	873354	.	+	2	Parent=Os02t0116500-01
Chr02	irgsp1_rep	CDS	873583	873684	.	+	0	Parent=Os02t0116500-01
Chr02	irgsp1_rep	CDS	873862	873954	.	+	0	Parent=Os02t0116500-01
Chr02	irgsp1_rep	CDS	875047	875119	.	+	0	Parent=Os02t0116500-01
Chr02	irgsp1_rep	CDS	875213	875478	.	+	2	Parent=Os02t0116500-01
Chr02	irgsp1_rep	three_prime_UTR	875479	875665	.	+	.	Parent=Os02t0116500-01
Chr02	irgsp1_rep	mRNA	875964	878615	.	-	.	ID=Os02t0116600-01;Name=Os02t0116600-01;Locus_id=Os02g0116600;RAP-DB Gene Symbol Synonym(s)=OsbHLH59%2C OsPRI3;RAP-DB Gene Name Synonym(s)=POSITIVE REGULATOR OF IRON DEFICIENCY RESPONSE 3;CGSNL Gene Symbol=BHLH59;CGSNL Gene Name=BASIC HELIX-LOOP-HELIX PROTEIN 59;Oryzabase Gene Symbol Synonym(s)=OsbHLH059%2C bHLH059%2C OsbHLH59%2C bHLH59%2C OsPRI3%2C PRI3;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 059%2C POSITIVE REGULATOR OF IRON HOMEOSTASIS 3;Note=Basic helix-loop-helix (bHLH) protein%2C Maintenance of Fe homeostasis;Transcript_evidence=AK103434;ORF_evidence=Q6ZGM4;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Helix-loop-helix DNA-binding domain superfamily (IPR036638),Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);NIAS_FLcDNA=J033129B02;Manual Curation=November 6%2C 2019;Literature_PMID=31674679;Oryzabase=15349;Expression=AK103434;TENOR=Os02t0116600-01;KEGG=Os02t0116600-01
Chr02	irgsp1_rep	five_prime_UTR	878356	878615	.	-	.	Parent=Os02t0116600-01
Chr02	irgsp1_rep	CDS	878246	878355	.	-	0	Parent=Os02t0116600-01
Chr02	irgsp1_rep	CDS	877508	877570	.	-	1	Parent=Os02t0116600-01
Chr02	irgsp1_rep	CDS	877222	877302	.	-	1	Parent=Os02t0116600-01
Chr02	irgsp1_rep	CDS	876937	877099	.	-	1	Parent=Os02t0116600-01
Chr02	irgsp1_rep	CDS	876317	876610	.	-	0	Parent=Os02t0116600-01
Chr02	irgsp1_rep	three_prime_UTR	875964	876316	.	-	.	Parent=Os02t0116600-01
Chr02	irgsp1_rep	mRNA	876032	878452	.	-	.	ID=Os02t0116600-02;Name=Os02t0116600-02;Locus_id=Os02g0116600;CGSNL Gene Symbol=BHLH59;CGSNL Gene Name=BASIC HELIX-LOOP-HELIX PROTEIN 59;Oryzabase Gene Symbol Synonym(s)=OsbHLH059%2C bHLH059%2C OsbHLH59%2C bHLH59%2C OsPRI3%2C PRI3;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 059%2C POSITIVE REGULATOR OF IRON HOMEOSTASIS 3;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=AK104188 (DDBJ%2C Best hit),AK060881 (DDBJ%2C Best hit);ORF_evidence=B6SST8 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=006-303-B03,001-035-A10;Oryzabase=15349;Expression=AK104188;TENOR=Os02t0116600-02;KEGG=Os02t0116600-02
Chr02	irgsp1_rep	five_prime_UTR	878356	878452	.	-	.	Parent=Os02t0116600-02
Chr02	irgsp1_rep	CDS	878246	878355	.	-	0	Parent=Os02t0116600-02
Chr02	irgsp1_rep	CDS	877508	877570	.	-	1	Parent=Os02t0116600-02
Chr02	irgsp1_rep	CDS	877222	877302	.	-	1	Parent=Os02t0116600-02
Chr02	irgsp1_rep	CDS	876937	877099	.	-	1	Parent=Os02t0116600-02
Chr02	irgsp1_rep	CDS	876317	876610	.	-	0	Parent=Os02t0116600-02
Chr02	irgsp1_rep	three_prime_UTR	876032	876316	.	-	.	Parent=Os02t0116600-02
Chr02	irgsp1_rep	mRNA	884324	887679	.	+	.	ID=Os02t0116700-01;Name=Os02t0116700-01;Locus_id=Os02g0116700;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK109928 (DDBJ%2C Best hit);ORF_evidence=Q258Z9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-151-H03;Expression=AK109928;TENOR=Os02t0116700-01;KEGG=Os02t0116700-01
Chr02	irgsp1_rep	five_prime_UTR	884324	884466	.	+	.	Parent=Os02t0116700-01
Chr02	irgsp1_rep	CDS	884467	887649	.	+	0	Parent=Os02t0116700-01
Chr02	irgsp1_rep	three_prime_UTR	887650	887679	.	+	.	Parent=Os02t0116700-01
Chr02	irgsp1_rep	mRNA	884549	887574	.	-	.	ID=Os02t0116750-00;Name=Os02t0116750-00;Locus_id=Os02g0116750;Note=Hypothetical protein.;Transcript_evidence=AK366175 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0116750-00
Chr02	irgsp1_rep	five_prime_UTR	886809	887574	.	-	.	Parent=Os02t0116750-00
Chr02	irgsp1_rep	CDS	886237	886808	.	-	0	Parent=Os02t0116750-00
Chr02	irgsp1_rep	CDS	884549	885195	.	-	1	Parent=Os02t0116750-00
Chr02	irgsp1_rep	mRNA	890263	894233	.	+	.	ID=Os02t0116800-01;Name=Os02t0116800-01;Locus_id=Os02g0116800;CGSNL Gene Symbol=REM6.1;CGSNL Gene Name=REMORIN 6.1;Oryzabase Gene Symbol Synonym(s)=OsREM6.1;Oryzabase Gene Name Synonym(s)=Remorin 6.1%2C remorin group 6 member 1;Note=Remorin%2C C-terminal region domain containing protein.;Transcript_evidence=AK102604 (DDBJ%2C Best hit);ORF_evidence=A2X045 (UniProt);InterPro=Remorin%2C C-terminal (IPR005516);NIAS_FLcDNA=J033098O09;Oryzabase=20278;Expression=AK102604;TENOR=Os02t0116800-01;KEGG=Os02t0116800-01
Chr02	irgsp1_rep	five_prime_UTR	890263	890390	.	+	.	Parent=Os02t0116800-01
Chr02	irgsp1_rep	CDS	890391	890429	.	+	0	Parent=Os02t0116800-01
Chr02	irgsp1_rep	CDS	890565	890730	.	+	0	Parent=Os02t0116800-01
Chr02	irgsp1_rep	CDS	891209	891769	.	+	2	Parent=Os02t0116800-01
Chr02	irgsp1_rep	CDS	892365	892845	.	+	2	Parent=Os02t0116800-01
Chr02	irgsp1_rep	CDS	892952	893033	.	+	1	Parent=Os02t0116800-01
Chr02	irgsp1_rep	CDS	893818	894021	.	+	0	Parent=Os02t0116800-01
Chr02	irgsp1_rep	three_prime_UTR	894022	894233	.	+	.	Parent=Os02t0116800-01
Chr02	irgsp1_rep	mRNA	894656	895615	.	-	.	ID=Os02t0116900-01;Name=Os02t0116900-01;Locus_id=Os02g0116900;Note=Similar to 15.9 kDa subunit of RNA polymerase II.;Transcript_evidence=AK121401 (DDBJ%2C Best hit);ORF_evidence=NP_001148722.1 (RefSeq);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899);InterPro=RNA polymerase II%2C Rpb4 (IPR005574),RNA polymerase II%2C Rpb4%2C core (IPR006590),HRDC-like (IPR010997);NIAS_FLcDNA=J023131N03;Expression=AK121401;TENOR=Os02t0116900-01;KEGG=Os02t0116900-01
Chr02	irgsp1_rep	five_prime_UTR	895525	895615	.	-	.	Parent=Os02t0116900-01
Chr02	irgsp1_rep	CDS	895476	895524	.	-	0	Parent=Os02t0116900-01
Chr02	irgsp1_rep	CDS	895019	895398	.	-	2	Parent=Os02t0116900-01
Chr02	irgsp1_rep	three_prime_UTR	894656	895018	.	-	.	Parent=Os02t0116900-01
Chr02	irgsp1_rep	mRNA	896074	900370	.	+	.	ID=Os02t0117100-01;Name=Os02t0117100-01;Locus_id=Os02g0117100;Note=4-diphosphocytidyl-2C-methyl-D-erythritol synthase%2C conserved site domain containing protein.;Transcript_evidence=AK064929 (DDBJ%2C Best hit);ORF_evidence=Q9SSM1 (UniProt);InterPro=Domain of unknown function DUF1995 (IPR018962);NIAS_FLcDNA=J013000O03;Expression=AK064929;TENOR=Os02t0117100-01;KEGG=Os02t0117100-01
Chr02	irgsp1_rep	five_prime_UTR	896074	896127	.	+	.	Parent=Os02t0117100-01
Chr02	irgsp1_rep	CDS	896128	896429	.	+	0	Parent=Os02t0117100-01
Chr02	irgsp1_rep	CDS	896578	896608	.	+	1	Parent=Os02t0117100-01
Chr02	irgsp1_rep	CDS	896903	896995	.	+	0	Parent=Os02t0117100-01
Chr02	irgsp1_rep	CDS	897096	897158	.	+	0	Parent=Os02t0117100-01
Chr02	irgsp1_rep	CDS	897279	897390	.	+	0	Parent=Os02t0117100-01
Chr02	irgsp1_rep	CDS	897947	898032	.	+	2	Parent=Os02t0117100-01
Chr02	irgsp1_rep	CDS	898845	898903	.	+	0	Parent=Os02t0117100-01
Chr02	irgsp1_rep	CDS	898990	899092	.	+	1	Parent=Os02t0117100-01
Chr02	irgsp1_rep	CDS	899182	899242	.	+	0	Parent=Os02t0117100-01
Chr02	irgsp1_rep	CDS	899472	899554	.	+	2	Parent=Os02t0117100-01
Chr02	irgsp1_rep	CDS	899635	899715	.	+	0	Parent=Os02t0117100-01
Chr02	irgsp1_rep	CDS	900018	900077	.	+	0	Parent=Os02t0117100-01
Chr02	irgsp1_rep	three_prime_UTR	900078	900370	.	+	.	Parent=Os02t0117100-01
Chr02	irgsp1_rep	mRNA	900980	905838	.	+	.	ID=Os02t0117200-01;Name=Os02t0117200-01;Locus_id=Os02g0117200;Note=Similar to MIR-interacting saposin-like protein.;Transcript_evidence=AK241361 (DDBJ%2C Best hit);ORF_evidence=B6T6D7 (UniProt);InterPro=Protein of unknown function DUF3456 (IPR021852);NIAS_FLcDNA=J065151F22;TENOR=Os02t0117200-01;KEGG=Os02t0117200-01
Chr02	irgsp1_rep	five_prime_UTR	900980	901033	.	+	.	Parent=Os02t0117200-01
Chr02	irgsp1_rep	CDS	901034	901153	.	+	0	Parent=Os02t0117200-01
Chr02	irgsp1_rep	CDS	901455	901481	.	+	0	Parent=Os02t0117200-01
Chr02	irgsp1_rep	CDS	901713	901792	.	+	0	Parent=Os02t0117200-01
Chr02	irgsp1_rep	CDS	903739	903811	.	+	1	Parent=Os02t0117200-01
Chr02	irgsp1_rep	CDS	904015	904072	.	+	0	Parent=Os02t0117200-01
Chr02	irgsp1_rep	CDS	904561	904615	.	+	2	Parent=Os02t0117200-01
Chr02	irgsp1_rep	CDS	905140	905164	.	+	1	Parent=Os02t0117200-01
Chr02	irgsp1_rep	CDS	905330	905421	.	+	0	Parent=Os02t0117200-01
Chr02	irgsp1_rep	CDS	905540	905570	.	+	1	Parent=Os02t0117200-01
Chr02	irgsp1_rep	three_prime_UTR	905571	905838	.	+	.	Parent=Os02t0117200-01
Chr02	irgsp1_rep	mRNA	906668	911368	.	+	.	ID=Os02t0117400-01;Name=Os02t0117400-01;Locus_id=Os02g0117400;CGSNL Gene Symbol=SPP1;CGSNL Gene Name=SIGNAL PEPTIDE PEPTIDASE 1;Oryzabase Gene Symbol Synonym(s)=OsSPP1;Oryzabase Gene Name Synonym(s)=signal peptide peptidase 1;Note=Peptidase A22B%2C signal peptide peptidase domain containing protein.;Transcript_evidence=AK061815 (DDBJ%2C Best hit),AK102022 (DDBJ%2C Best hit);ORF_evidence=XP_002875188.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A22%2C presenilin signal peptide (IPR006639),Peptidase A22B%2C signal peptide peptidase (IPR007369);NIAS_FLcDNA=001-040-B05,J033080J11;Oryzabase=22729;TENOR=Os02t0117400-01
Chr02	irgsp1_rep	five_prime_UTR	906668	906854	.	+	.	Parent=Os02t0117400-01
Chr02	irgsp1_rep	five_prime_UTR	907161	907252	.	+	.	Parent=Os02t0117400-01
Chr02	irgsp1_rep	CDS	907253	907292	.	+	0	Parent=Os02t0117400-01
Chr02	irgsp1_rep	CDS	907416	907531	.	+	2	Parent=Os02t0117400-01
Chr02	irgsp1_rep	CDS	907661	907812	.	+	0	Parent=Os02t0117400-01
Chr02	irgsp1_rep	CDS	907918	908003	.	+	1	Parent=Os02t0117400-01
Chr02	irgsp1_rep	CDS	908182	908309	.	+	2	Parent=Os02t0117400-01
Chr02	irgsp1_rep	CDS	908451	908501	.	+	0	Parent=Os02t0117400-01
Chr02	irgsp1_rep	CDS	908774	908860	.	+	0	Parent=Os02t0117400-01
Chr02	irgsp1_rep	CDS	908964	909033	.	+	0	Parent=Os02t0117400-01
Chr02	irgsp1_rep	CDS	909729	909865	.	+	2	Parent=Os02t0117400-01
Chr02	irgsp1_rep	CDS	910313	910390	.	+	0	Parent=Os02t0117400-01
Chr02	irgsp1_rep	CDS	910971	911057	.	+	0	Parent=Os02t0117400-01
Chr02	irgsp1_rep	three_prime_UTR	911058	911368	.	+	.	Parent=Os02t0117400-01
Chr02	irgsp1_rep	mRNA	918797	923968	.	+	.	ID=Os02t0117500-01;Name=Os02t0117500-01;Locus_id=Os02g0117500;Oryzabase Gene Symbol Synonym(s)=OsGLR3.1%2C GLR3.1%2C OsGLR3.2%2C GLR3.2;Oryzabase Gene Name Synonym(s)=Glutamate receptor homolog 3.1%2C GLUTAMATE RECEPTOR-LIKE 3.2;Note=Similar to Glutamate receptor 3.3 precursor (Ligand-gated ion channel 3.3).;Transcript_evidence=AK068706 (DDBJ%2C Best hit);ORF_evidence=B8AGI2 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: G-protein coupled receptor protein signaling pathway (GO:0007186),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Cellular Component: outer membrane-bounded periplasmic space (GO:0030288),Molecular Function: GABA-B receptor activity (GO:0004965),Molecular Function: ionotropic glutamate receptor activity (GO:0004970),Molecular Function: transporter activity (GO:0005215),Molecular Function: extracellular-glutamate-gated ion channel activity (GO:0005234);InterPro=Ionotropic glutamate receptor (IPR001320),Extracellular solute-binding protein%2C family 3 (IPR001638),Extracellular ligand-binding receptor (IPR001828),GPCR%2C family 3%2C gamma-aminobutyric acid receptor%2C type B (IPR002455),Ionotropic glutamate receptor%2C plant (IPR017103);NIAS_FLcDNA=J013158O16;Oryzabase=15498;Expression=AK068706;TENOR=Os02t0117500-01;KEGG=Os02t0117500-01
Chr02	irgsp1_rep	five_prime_UTR	918797	918954	.	+	.	Parent=Os02t0117500-01
Chr02	irgsp1_rep	five_prime_UTR	920055	920127	.	+	.	Parent=Os02t0117500-01
Chr02	irgsp1_rep	CDS	920128	920392	.	+	0	Parent=Os02t0117500-01
Chr02	irgsp1_rep	CDS	920491	921839	.	+	2	Parent=Os02t0117500-01
Chr02	irgsp1_rep	CDS	921921	922198	.	+	0	Parent=Os02t0117500-01
Chr02	irgsp1_rep	CDS	922534	922565	.	+	1	Parent=Os02t0117500-01
Chr02	irgsp1_rep	CDS	922654	923060	.	+	2	Parent=Os02t0117500-01
Chr02	irgsp1_rep	CDS	923210	923713	.	+	0	Parent=Os02t0117500-01
Chr02	irgsp1_rep	three_prime_UTR	923714	923968	.	+	.	Parent=Os02t0117500-01
Chr02	irgsp1_rep	mRNA	923296	925069	.	-	.	ID=Os02t0117550-01;Name=Os02t0117550-01;Locus_id=Os02g0117550;Note=Hypothetical gene.;Transcript_evidence=AK288992 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090087J01;TENOR=Os02t0117550-01;KEGG=Os02t0117550-01
Chr02	irgsp1_rep	five_prime_UTR	924268	925069	.	-	.	Parent=Os02t0117550-01
Chr02	irgsp1_rep	CDS	924043	924267	.	-	0	Parent=Os02t0117550-01
Chr02	irgsp1_rep	three_prime_UTR	923296	924042	.	-	.	Parent=Os02t0117550-01
Chr02	irgsp1_rep	mRNA	924542	926314	.	+	.	ID=Os02t0117600-01;Name=Os02t0117600-01;Locus_id=Os02g0117600;Oryzabase Gene Symbol Synonym(s)=OsFKBP18;Oryzabase Gene Name Synonym(s)=FK506 binding protein 18;Note=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type domain containing protein.;Transcript_evidence=AK104162 (DDBJ%2C Best hit),AK111582 (DDBJ%2C Best hit);ORF_evidence=XP_002890409.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457);InterPro=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type%2C domain (IPR001179),Peptidyl-prolyl cis-trans isomerase%2C FKBP-type (IPR023566);NIAS_FLcDNA=006-211-G12,J013082P03;Oryzabase=10034;TENOR=Os02t0117600-01
Chr02	irgsp1_rep	CDS	924542	924839	.	+	0	Parent=Os02t0117600-01
Chr02	irgsp1_rep	CDS	925150	925220	.	+	2	Parent=Os02t0117600-01
Chr02	irgsp1_rep	CDS	925303	925389	.	+	0	Parent=Os02t0117600-01
Chr02	irgsp1_rep	CDS	925482	925631	.	+	0	Parent=Os02t0117600-01
Chr02	irgsp1_rep	CDS	925750	925809	.	+	0	Parent=Os02t0117600-01
Chr02	irgsp1_rep	CDS	925914	925976	.	+	0	Parent=Os02t0117600-01
Chr02	irgsp1_rep	three_prime_UTR	925977	926013	.	+	.	Parent=Os02t0117600-01
Chr02	irgsp1_rep	three_prime_UTR	926097	926314	.	+	.	Parent=Os02t0117600-01
Chr02	irgsp1_rep	mRNA	924566	926386	.	+	.	ID=Os02t0117600-02;Name=Os02t0117600-02;Locus_id=Os02g0117600;Oryzabase Gene Symbol Synonym(s)=OsFKBP18;Oryzabase Gene Name Synonym(s)=FK506 binding protein 18;Note=Similar to F2D10.32.;Transcript_evidence=AK112015 (DDBJ%2C Best hit);ORF_evidence=XP_002890409.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457);InterPro=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type%2C domain (IPR001179),Peptidyl-prolyl cis-trans isomerase%2C FKBP-type (IPR023566);NIAS_FLcDNA=006-303-D03;Oryzabase=10034;TENOR=Os02t0117600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	924566	924595	.	+	.	Parent=Os02t0117600-02
Chr02	irgsp1_rep	CDS	924596	924839	.	+	0	Parent=Os02t0117600-02
Chr02	irgsp1_rep	CDS	925150	925220	.	+	2	Parent=Os02t0117600-02
Chr02	irgsp1_rep	CDS	925303	925389	.	+	0	Parent=Os02t0117600-02
Chr02	irgsp1_rep	CDS	925482	925631	.	+	0	Parent=Os02t0117600-02
Chr02	irgsp1_rep	CDS	925750	925809	.	+	0	Parent=Os02t0117600-02
Chr02	irgsp1_rep	CDS	925914	925976	.	+	0	Parent=Os02t0117600-02
Chr02	irgsp1_rep	three_prime_UTR	925977	926013	.	+	.	Parent=Os02t0117600-02
Chr02	irgsp1_rep	three_prime_UTR	926097	926386	.	+	.	Parent=Os02t0117600-02
Chr02	irgsp1_rep	mRNA	926031	929928	.	-	.	ID=Os02t0117700-01;Name=Os02t0117700-01;Locus_id=Os02g0117700;RAP-DB Gene Symbol Synonym(s)=UGP2%2C Ugp2%2C OsUgp2;RAP-DB Gene Name Synonym(s)=UDP-GLUCOSE PYROPHOSPHORYLASE 2%2C UDP-Glucose Pyrophosphorylase2%2C UDP-Glucose Pyrophosphorylase 2%2C UDPGase 2;CGSNL Gene Symbol=UGP2;CGSNL Gene Name=UDP-GLUCOSE PYROPHOSPHORYLASE 2;Oryzabase Gene Symbol Synonym(s)=Ugp2%2C OsUgp2;Oryzabase Gene Name Synonym(s)=UDP-Glucose Pyrophosphorylase2%2C UDP-Glucose Pyrophosphorylase 2%2C UDPGase 2;Note=UDPase;Transcript_evidence=AK071248 (Genbank);ORF_evidence=Q6ZGL5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=UTP--glucose-1-phosphate uridylyltransferase (IPR002618),UTP--glucose-1-phosphate uridylyltransferase%2C subgroup (IPR016267);NIAS_FLcDNA=J023088D10;Manual Curation=August 2%2C 2009;Literature_PMID=17400897;Oryzabase=7491;Expression=AK071248;TENOR=Os02t0117700-01;KEGG=Os02t0117700-01 (EC:2.7.7.9)
Chr02	irgsp1_rep	five_prime_UTR	929869	929928	.	-	.	Parent=Os02t0117700-01
Chr02	irgsp1_rep	CDS	929810	929868	.	-	0	Parent=Os02t0117700-01
Chr02	irgsp1_rep	CDS	929656	929703	.	-	1	Parent=Os02t0117700-01
Chr02	irgsp1_rep	CDS	929354	929536	.	-	1	Parent=Os02t0117700-01
Chr02	irgsp1_rep	CDS	929177	929237	.	-	1	Parent=Os02t0117700-01
Chr02	irgsp1_rep	CDS	929002	929079	.	-	0	Parent=Os02t0117700-01
Chr02	irgsp1_rep	CDS	928874	928924	.	-	0	Parent=Os02t0117700-01
Chr02	irgsp1_rep	CDS	928721	928794	.	-	0	Parent=Os02t0117700-01
Chr02	irgsp1_rep	CDS	928556	928628	.	-	1	Parent=Os02t0117700-01
Chr02	irgsp1_rep	CDS	928403	928460	.	-	0	Parent=Os02t0117700-01
Chr02	irgsp1_rep	CDS	928244	928290	.	-	2	Parent=Os02t0117700-01
Chr02	irgsp1_rep	CDS	928100	928165	.	-	0	Parent=Os02t0117700-01
Chr02	irgsp1_rep	CDS	927899	927931	.	-	0	Parent=Os02t0117700-01
Chr02	irgsp1_rep	CDS	927755	927807	.	-	0	Parent=Os02t0117700-01
Chr02	irgsp1_rep	CDS	927596	927671	.	-	1	Parent=Os02t0117700-01
Chr02	irgsp1_rep	CDS	927462	927518	.	-	0	Parent=Os02t0117700-01
Chr02	irgsp1_rep	CDS	927298	927381	.	-	0	Parent=Os02t0117700-01
Chr02	irgsp1_rep	CDS	927129	927227	.	-	0	Parent=Os02t0117700-01
Chr02	irgsp1_rep	CDS	926928	927032	.	-	0	Parent=Os02t0117700-01
Chr02	irgsp1_rep	CDS	926637	926708	.	-	0	Parent=Os02t0117700-01
Chr02	irgsp1_rep	CDS	926333	926359	.	-	0	Parent=Os02t0117700-01
Chr02	irgsp1_rep	three_prime_UTR	926031	926332	.	-	.	Parent=Os02t0117700-01
Chr02	irgsp1_rep	mRNA	926636	928472	.	+	.	ID=Os02t0117750-00;Name=Os02t0117750-00;Locus_id=Os02g0117750;Note=Hypothetical gene.;Transcript_evidence=BT016879 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0117750-00;KEGG=Os02t0117750-00
Chr02	irgsp1_rep	five_prime_UTR	926636	926691	.	+	.	Parent=Os02t0117750-00
Chr02	irgsp1_rep	five_prime_UTR	926910	926937	.	+	.	Parent=Os02t0117750-00
Chr02	irgsp1_rep	CDS	926938	927029	.	+	0	Parent=Os02t0117750-00
Chr02	irgsp1_rep	CDS	927126	927235	.	+	1	Parent=Os02t0117750-00
Chr02	irgsp1_rep	CDS	927307	927359	.	+	2	Parent=Os02t0117750-00
Chr02	irgsp1_rep	three_prime_UTR	927360	927369	.	+	.	Parent=Os02t0117750-00
Chr02	irgsp1_rep	three_prime_UTR	927448	927517	.	+	.	Parent=Os02t0117750-00
Chr02	irgsp1_rep	three_prime_UTR	927595	927669	.	+	.	Parent=Os02t0117750-00
Chr02	irgsp1_rep	three_prime_UTR	927753	927824	.	+	.	Parent=Os02t0117750-00
Chr02	irgsp1_rep	three_prime_UTR	928083	928208	.	+	.	Parent=Os02t0117750-00
Chr02	irgsp1_rep	three_prime_UTR	928398	928472	.	+	.	Parent=Os02t0117750-00
Chr02	irgsp1_rep	mRNA	930302	934270	.	-	.	ID=Os02t0117800-01;Name=Os02t0117800-01;Locus_id=Os02g0117800;CGSNL Gene Symbol=ATG5;CGSNL Gene Name=AUTOPHAGY ASSOCIATED GENE 5;Oryzabase Gene Symbol Synonym(s)=OsATG5%2C Atg5;Oryzabase Gene Name Synonym(s)=autophagy 5%2C AUTOPHAGY RELATED5;Note=Similar to APG5 (Autophagy 5) like protein.;Transcript_evidence=AK063557 (DDBJ%2C Best hit);ORF_evidence=Q6ZGL4 (UniProt);GO=Biological Process: autophagy (GO:0006914),Cellular Component: cytoplasm (GO:0005737);InterPro=Autophagy-related protein 5 (IPR007239);NIAS_FLcDNA=001-117-E11;Oryzabase=9639;Expression=AK063557;TENOR=Os02t0117800-01;KEGG=Os02t0117800-01
Chr02	irgsp1_rep	five_prime_UTR	934214	934270	.	-	.	Parent=Os02t0117800-01
Chr02	irgsp1_rep	CDS	934079	934213	.	-	0	Parent=Os02t0117800-01
Chr02	irgsp1_rep	CDS	933411	933535	.	-	0	Parent=Os02t0117800-01
Chr02	irgsp1_rep	CDS	932249	932315	.	-	1	Parent=Os02t0117800-01
Chr02	irgsp1_rep	CDS	932068	932157	.	-	0	Parent=Os02t0117800-01
Chr02	irgsp1_rep	CDS	931888	931975	.	-	0	Parent=Os02t0117800-01
Chr02	irgsp1_rep	CDS	931567	931704	.	-	2	Parent=Os02t0117800-01
Chr02	irgsp1_rep	CDS	931223	931354	.	-	2	Parent=Os02t0117800-01
Chr02	irgsp1_rep	CDS	930461	930828	.	-	2	Parent=Os02t0117800-01
Chr02	irgsp1_rep	three_prime_UTR	930302	930460	.	-	.	Parent=Os02t0117800-01
Chr02	irgsp1_rep	mRNA	934683	937786	.	-	.	ID=Os02t0117900-01;Name=Os02t0117900-01;Locus_id=Os02g0117900;Oryzabase Gene Symbol Synonym(s)=OsTBL38%2C TBL38;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 38;Note=Protein of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=AK069109 (DDBJ%2C Best hit);ORF_evidence=A2X053 (UniProt);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=J023007M17;Oryzabase=21493;Expression=AK069109;TENOR=Os02t0117900-01;KEGG=Os02t0117900-01
Chr02	irgsp1_rep	five_prime_UTR	937708	937786	.	-	.	Parent=Os02t0117900-01
Chr02	irgsp1_rep	CDS	937175	937707	.	-	0	Parent=Os02t0117900-01
Chr02	irgsp1_rep	CDS	935965	936105	.	-	1	Parent=Os02t0117900-01
Chr02	irgsp1_rep	CDS	935241	935490	.	-	1	Parent=Os02t0117900-01
Chr02	irgsp1_rep	CDS	934865	935152	.	-	0	Parent=Os02t0117900-01
Chr02	irgsp1_rep	three_prime_UTR	934683	934864	.	-	.	Parent=Os02t0117900-01
Chr02	irgsp1_rep	mRNA	938375	941300	.	-	.	ID=Os02t0118000-01;Name=Os02t0118000-01;Locus_id=Os02g0118000;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK068524 (DDBJ%2C Best hit);ORF_evidence=B6SYZ1 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J013155O22;Expression=AK068524;TENOR=Os02t0118000-01;KEGG=Os02t0118000-01
Chr02	irgsp1_rep	five_prime_UTR	941052	941300	.	-	.	Parent=Os02t0118000-01
Chr02	irgsp1_rep	five_prime_UTR	939991	939995	.	-	.	Parent=Os02t0118000-01
Chr02	irgsp1_rep	CDS	938530	939990	.	-	0	Parent=Os02t0118000-01
Chr02	irgsp1_rep	three_prime_UTR	938375	938529	.	-	.	Parent=Os02t0118000-01
Chr02	irgsp1_rep	mRNA	950731	954690	.	+	.	ID=Os02t0118200-01;Name=Os02t0118200-01;Locus_id=Os02g0118200;CGSNL Gene Symbol=RLCK60;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 60;Oryzabase Gene Symbol Synonym(s)=OsRLCK60;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 60;Note=Similar to Protein kinase APK1B%2C chloroplast precursor (EC 2.7.1.-).;Transcript_evidence=AK111716 (DDBJ%2C Best hit);ORF_evidence=NP_001147123.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023022O07;Oryzabase=18776;Expression=AK111716;TENOR=Os02t0118200-01;KEGG=Os02t0118200-01
Chr02	irgsp1_rep	five_prime_UTR	950731	950854	.	+	.	Parent=Os02t0118200-01
Chr02	irgsp1_rep	CDS	950855	950921	.	+	0	Parent=Os02t0118200-01
Chr02	irgsp1_rep	CDS	951554	951924	.	+	2	Parent=Os02t0118200-01
Chr02	irgsp1_rep	CDS	952553	952688	.	+	0	Parent=Os02t0118200-01
Chr02	irgsp1_rep	CDS	952956	953092	.	+	2	Parent=Os02t0118200-01
Chr02	irgsp1_rep	CDS	953168	953291	.	+	0	Parent=Os02t0118200-01
Chr02	irgsp1_rep	CDS	954041	954489	.	+	2	Parent=Os02t0118200-01
Chr02	irgsp1_rep	three_prime_UTR	954490	954690	.	+	.	Parent=Os02t0118200-01
Chr02	irgsp1_rep	mRNA	961519	965454	.	+	.	ID=Os02t0118400-01;Name=Os02t0118400-01;Locus_id=Os02g0118400;Note=Similar to CMP-N-acetylneuraminate-beta-galactosamide-alpha-2%2C6-sialyltransferase (EC 2.4.99.1) (Beta-galactoside alpha-2%2C6-sialyltransferase) (Alpha 2%2C6-ST) (Sialyltransferase 1) (ST6Gal I) (B-cell antigen CD75).;Transcript_evidence=AK101004 (DDBJ%2C Best hit);ORF_evidence=Q4JEY4 (UniProt);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: integral to Golgi membrane (GO:0030173),Molecular Function: sialyltransferase activity (GO:0008373);InterPro=Glycosyl transferase%2C family 29 (IPR001675);NIAS_FLcDNA=J023147K09;Expression=AK101004;TENOR=Os02t0118400-01;KEGG=Os02t0118400-01 (EC:2.4.99.1)
Chr02	irgsp1_rep	five_prime_UTR	961519	961624	.	+	.	Parent=Os02t0118400-01
Chr02	irgsp1_rep	CDS	961625	961709	.	+	0	Parent=Os02t0118400-01
Chr02	irgsp1_rep	CDS	961796	961869	.	+	2	Parent=Os02t0118400-01
Chr02	irgsp1_rep	CDS	962236	962325	.	+	0	Parent=Os02t0118400-01
Chr02	irgsp1_rep	CDS	963087	963164	.	+	0	Parent=Os02t0118400-01
Chr02	irgsp1_rep	CDS	963348	963448	.	+	0	Parent=Os02t0118400-01
Chr02	irgsp1_rep	CDS	963540	963732	.	+	1	Parent=Os02t0118400-01
Chr02	irgsp1_rep	CDS	963810	963900	.	+	0	Parent=Os02t0118400-01
Chr02	irgsp1_rep	CDS	963970	964034	.	+	2	Parent=Os02t0118400-01
Chr02	irgsp1_rep	CDS	964126	964280	.	+	0	Parent=Os02t0118400-01
Chr02	irgsp1_rep	CDS	964363	964444	.	+	1	Parent=Os02t0118400-01
Chr02	irgsp1_rep	CDS	964569	964678	.	+	0	Parent=Os02t0118400-01
Chr02	irgsp1_rep	CDS	964885	965080	.	+	1	Parent=Os02t0118400-01
Chr02	irgsp1_rep	three_prime_UTR	965081	965454	.	+	.	Parent=Os02t0118400-01
Chr02	irgsp1_rep	mRNA	961549	965543	.	+	.	ID=Os02t0118400-02;Name=Os02t0118400-02;Locus_id=Os02g0118400;Note=Similar to CMP-N-acetylneuraminate-beta-galactosamide-alpha-2%2C6-sialyltransferase (EC 2.4.99.1) (Beta-galactoside alpha-2%2C6-sialyltransferase) (Alpha 2%2C6-ST) (Sialyltransferase 1) (ST6Gal I) (B-cell antigen CD75).;Transcript_evidence=AK064002 (DDBJ%2C Best hit);ORF_evidence=Q4JEY4 (UniProt);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: integral to Golgi membrane (GO:0030173),Molecular Function: sialyltransferase activity (GO:0008373);InterPro=Glycosyl transferase%2C family 29 (IPR001675);NIAS_FLcDNA=001-124-F12;Expression=AK064002;TENOR=Os02t0118400-02;KEGG=Os02t0118400-02 (EC:2.4.99.1)
Chr02	irgsp1_rep	five_prime_UTR	961549	961624	.	+	.	Parent=Os02t0118400-02
Chr02	irgsp1_rep	CDS	961625	961709	.	+	0	Parent=Os02t0118400-02
Chr02	irgsp1_rep	CDS	961796	961869	.	+	2	Parent=Os02t0118400-02
Chr02	irgsp1_rep	CDS	962236	962325	.	+	0	Parent=Os02t0118400-02
Chr02	irgsp1_rep	CDS	963087	963164	.	+	0	Parent=Os02t0118400-02
Chr02	irgsp1_rep	CDS	963348	963448	.	+	0	Parent=Os02t0118400-02
Chr02	irgsp1_rep	CDS	963540	963732	.	+	1	Parent=Os02t0118400-02
Chr02	irgsp1_rep	CDS	963810	963900	.	+	0	Parent=Os02t0118400-02
Chr02	irgsp1_rep	CDS	963970	964034	.	+	2	Parent=Os02t0118400-02
Chr02	irgsp1_rep	CDS	964126	964280	.	+	0	Parent=Os02t0118400-02
Chr02	irgsp1_rep	CDS	964363	964444	.	+	1	Parent=Os02t0118400-02
Chr02	irgsp1_rep	CDS	964569	964678	.	+	0	Parent=Os02t0118400-02
Chr02	irgsp1_rep	CDS	964885	965080	.	+	1	Parent=Os02t0118400-02
Chr02	irgsp1_rep	three_prime_UTR	965081	965543	.	+	.	Parent=Os02t0118400-02
Chr02	irgsp1_rep	mRNA	966113	966389	.	-	.	ID=Os02t0118500-00;Name=Os02t0118500-00;Locus_id=Os02g0118500;CGSNL Gene Symbol=THI20;CGSNL Gene Name=THIONIN 20;Oryzabase Gene Symbol Synonym(s)=OsTHI20%2C OsTHION20%2C THION20;Oryzabase Gene Name Synonym(s)=Thionin 20;Note=Conserved hypothetical protein.;Transcript_evidence=AK377053 (DDBJ);ORF_evidence=Q6ZH44 (UniProt);Oryzabase=19265;TENOR=Os02t0118500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	966389	966389	.	-	.	Parent=Os02t0118500-00
Chr02	irgsp1_rep	CDS	966113	966388	.	-	0	Parent=Os02t0118500-00
Chr02	irgsp1_rep	mRNA	978845	986395	.	+	.	ID=Os02t0118800-00;Name=Os02t0118800-00;Locus_id=Os02g0118800;Note=Similar to NBS-LRR disease resistance protein homologue (Fragment).;Transcript_evidence=ab initio prediction;ORF_evidence=Q84KC9 (UniProt);TENOR=Os02t0118800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	978845	979205	.	+	0	Parent=Os02t0118800-00
Chr02	irgsp1_rep	CDS	979686	980577	.	+	2	Parent=Os02t0118800-00
Chr02	irgsp1_rep	CDS	983059	985037	.	+	1	Parent=Os02t0118800-00
Chr02	irgsp1_rep	CDS	986286	986395	.	+	2	Parent=Os02t0118800-00
Chr02	irgsp1_rep	mRNA	989061	997516	.	-	.	ID=Os02t0118850-01;Name=Os02t0118850-01;Locus_id=Os02g0118850;Note=Hypothetical gene.;Transcript_evidence=AK242786 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090056H01;TENOR=Os02t0118850-01;KEGG=Os02t0118850-01
Chr02	irgsp1_rep	five_prime_UTR	996738	997516	.	-	.	Parent=Os02t0118850-01
Chr02	irgsp1_rep	five_prime_UTR	995600	995774	.	-	.	Parent=Os02t0118850-01
Chr02	irgsp1_rep	five_prime_UTR	995224	995529	.	-	.	Parent=Os02t0118850-01
Chr02	irgsp1_rep	CDS	994966	995223	.	-	0	Parent=Os02t0118850-01
Chr02	irgsp1_rep	three_prime_UTR	993535	994965	.	-	.	Parent=Os02t0118850-01
Chr02	irgsp1_rep	three_prime_UTR	989369	989818	.	-	.	Parent=Os02t0118850-01
Chr02	irgsp1_rep	three_prime_UTR	989061	989281	.	-	.	Parent=Os02t0118850-01
Chr02	irgsp1_rep	mRNA	991320	991828	.	+	.	ID=Os02t0118875-00;Name=Os02t0118875-00;Locus_id=Os02g0118875;Note=NB-ARC domain containing protein.;Transcript_evidence=HQ005765 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os02t0118875-00
Chr02	irgsp1_rep	five_prime_UTR	991320	991382	.	+	.	Parent=Os02t0118875-00
Chr02	irgsp1_rep	CDS	991383	991828	.	+	0	Parent=Os02t0118875-00
Chr02	irgsp1_rep	mRNA	993563	995506	.	+	.	ID=Os02t0118900-00;Name=Os02t0118900-00;Locus_id=Os02g0118900;Oryzabase Gene Symbol Synonym(s)=YR16%2C YR29%2C rNBS42;Oryzabase Gene Name Synonym(s)=NBS-LRR protein rNBS42;Note=Similar to NBS-LRR disease resistance protein homologue (Fragment).;Transcript_evidence=ab initio prediction;ORF_evidence=Q84KC9 (UniProt);Oryzabase=15179;TENOR=Os02t0118900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	993563	995506	.	+	0	Parent=Os02t0118900-00
Chr02	irgsp1_rep	mRNA	1000560	1003399	.	+	.	ID=Os02t0118950-00;Name=Os02t0118950-00;Locus_id=Os02g0118950;Note=Similar to NBS-LRR disease resistance protein homologue (Fragment).;Transcript_evidence=AJ507090 (DDBJ);ORF_evidence=Q84KC9 (UniProt);TENOR=Os02t0118950-00
Chr02	irgsp1_rep	five_prime_UTR	1000560	1000583	.	+	.	Parent=Os02t0118950-00
Chr02	irgsp1_rep	CDS	1000584	1001341	.	+	0	Parent=Os02t0118950-00
Chr02	irgsp1_rep	CDS	1001424	1003386	.	+	1	Parent=Os02t0118950-00
Chr02	irgsp1_rep	three_prime_UTR	1003387	1003399	.	+	.	Parent=Os02t0118950-00
Chr02	irgsp1_rep	mRNA	1003715	1005369	.	+	.	ID=Os02t0119000-00;Name=Os02t0119000-00;Locus_id=Os02g0119000;Note=Similar to Sialyltransferase-like protein.;Transcript_evidence=BT039764 (DDBJ);ORF_evidence=Q4JEY4 (UniProt);TENOR=Os02t0119000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	1003715	1004269	.	+	.	Parent=Os02t0119000-00
Chr02	irgsp1_rep	CDS	1004270	1004430	.	+	0	Parent=Os02t0119000-00
Chr02	irgsp1_rep	CDS	1004513	1004594	.	+	1	Parent=Os02t0119000-00
Chr02	irgsp1_rep	CDS	1004849	1004958	.	+	0	Parent=Os02t0119000-00
Chr02	irgsp1_rep	CDS	1005174	1005369	.	+	1	Parent=Os02t0119000-00
Chr02	irgsp1_rep	mRNA	1008469	1011856	.	-	.	ID=Os02t0119100-01;Name=Os02t0119100-01;Locus_id=Os02g0119100;Oryzabase Gene Symbol Synonym(s)=SIP9;Oryzabase Gene Name Synonym(s)=SKIP interacting protein 9%2C SKIPa-interacting protein 9%2C SKIPa-interacting protein 9;Note=Conserved hypothetical protein.;Transcript_evidence=AK060693 (DDBJ%2C Best hit);ORF_evidence=A3A2H9 (UniProt);NIAS_FLcDNA=001-030-C12;Oryzabase=9941;TENOR=Os02t0119100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	1011817	1011856	.	-	.	Parent=Os02t0119100-01
Chr02	irgsp1_rep	CDS	1011679	1011816	.	-	0	Parent=Os02t0119100-01
Chr02	irgsp1_rep	CDS	1011548	1011595	.	-	0	Parent=Os02t0119100-01
Chr02	irgsp1_rep	CDS	1011362	1011460	.	-	0	Parent=Os02t0119100-01
Chr02	irgsp1_rep	CDS	1010694	1011200	.	-	0	Parent=Os02t0119100-01
Chr02	irgsp1_rep	three_prime_UTR	1010510	1010693	.	-	.	Parent=Os02t0119100-01
Chr02	irgsp1_rep	three_prime_UTR	1010311	1010356	.	-	.	Parent=Os02t0119100-01
Chr02	irgsp1_rep	three_prime_UTR	1009945	1010038	.	-	.	Parent=Os02t0119100-01
Chr02	irgsp1_rep	three_prime_UTR	1009757	1009828	.	-	.	Parent=Os02t0119100-01
Chr02	irgsp1_rep	three_prime_UTR	1009594	1009652	.	-	.	Parent=Os02t0119100-01
Chr02	irgsp1_rep	three_prime_UTR	1009369	1009437	.	-	.	Parent=Os02t0119100-01
Chr02	irgsp1_rep	three_prime_UTR	1009176	1009227	.	-	.	Parent=Os02t0119100-01
Chr02	irgsp1_rep	three_prime_UTR	1008828	1008905	.	-	.	Parent=Os02t0119100-01
Chr02	irgsp1_rep	three_prime_UTR	1008469	1008752	.	-	.	Parent=Os02t0119100-01
Chr02	irgsp1_rep	mRNA	1014016	1016173	.	+	.	ID=Os02t0119200-01;Name=Os02t0119200-01;Locus_id=Os02g0119200;Note=Similar to Adenosine monophosphate binding protein 1 AMPBP1.;Transcript_evidence=AK070181 (DDBJ%2C Best hit);ORF_evidence=B6ST13 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873),AMP-binding%2C conserved site (IPR020845);NIAS_FLcDNA=J023043H21;Expression=AK070181;TENOR=Os02t0119200-01;KEGG=Os02t0119200-01
Chr02	irgsp1_rep	five_prime_UTR	1014016	1014140	.	+	.	Parent=Os02t0119200-01
Chr02	irgsp1_rep	CDS	1014141	1014344	.	+	0	Parent=Os02t0119200-01
Chr02	irgsp1_rep	CDS	1014537	1016048	.	+	0	Parent=Os02t0119200-01
Chr02	irgsp1_rep	three_prime_UTR	1016049	1016173	.	+	.	Parent=Os02t0119200-01
Chr02	irgsp1_rep	mRNA	1014535	1016006	.	-	.	ID=Os02t0119250-00;Name=Os02t0119250-00;Locus_id=Os02g0119250;Note=Hypothetical gene.;Transcript_evidence=EU941562 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0119250-00
Chr02	irgsp1_rep	CDS	1014535	1016006	.	-	0	Parent=Os02t0119250-00
Chr02	irgsp1_rep	mRNA	1017511	1021998	.	+	.	ID=Os02t0119300-01;Name=Os02t0119300-01;Locus_id=Os02g0119300;Note=Peptidase M14%2C carboxypeptidase A family protein.;Transcript_evidence=AK065427 (DDBJ%2C Best hit);ORF_evidence=XP_002863800.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: metallocarboxypeptidase activity (GO:0004181),Molecular Function: zinc ion binding (GO:0008270);InterPro=Peptidase M14%2C carboxypeptidase A (IPR000834);NIAS_FLcDNA=J013020E09;Expression=AK065427;TENOR=Os02t0119300-01;KEGG=Os02t0119300-01
Chr02	irgsp1_rep	five_prime_UTR	1017511	1017599	.	+	.	Parent=Os02t0119300-01
Chr02	irgsp1_rep	CDS	1017600	1017745	.	+	0	Parent=Os02t0119300-01
Chr02	irgsp1_rep	CDS	1018332	1018389	.	+	1	Parent=Os02t0119300-01
Chr02	irgsp1_rep	CDS	1018485	1018595	.	+	0	Parent=Os02t0119300-01
Chr02	irgsp1_rep	CDS	1018853	1018990	.	+	0	Parent=Os02t0119300-01
Chr02	irgsp1_rep	CDS	1019559	1019628	.	+	0	Parent=Os02t0119300-01
Chr02	irgsp1_rep	CDS	1019711	1019766	.	+	2	Parent=Os02t0119300-01
Chr02	irgsp1_rep	CDS	1020203	1020328	.	+	0	Parent=Os02t0119300-01
Chr02	irgsp1_rep	CDS	1020648	1020787	.	+	0	Parent=Os02t0119300-01
Chr02	irgsp1_rep	CDS	1020932	1021004	.	+	1	Parent=Os02t0119300-01
Chr02	irgsp1_rep	CDS	1021095	1021169	.	+	0	Parent=Os02t0119300-01
Chr02	irgsp1_rep	CDS	1021277	1021591	.	+	0	Parent=Os02t0119300-01
Chr02	irgsp1_rep	three_prime_UTR	1021592	1021998	.	+	.	Parent=Os02t0119300-01
Chr02	irgsp1_rep	mRNA	1022192	1024747	.	-	.	ID=Os02t0119400-01;Name=Os02t0119400-01;Locus_id=Os02g0119400;Note=Similar to Syntaxin 52 (AtSYP52).;Transcript_evidence=AK060055 (DDBJ%2C Best hit),AK102774 (DDBJ%2C Best hit);ORF_evidence=B6T493 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Target SNARE coiled-coil domain (IPR000727);NIAS_FLcDNA=006-305-D08,J033107H09;Expression=AK060055;TENOR=Os02t0119400-01;KEGG=Os02t0119400-01
Chr02	irgsp1_rep	five_prime_UTR	1024603	1024747	.	-	.	Parent=Os02t0119400-01
Chr02	irgsp1_rep	five_prime_UTR	1024405	1024414	.	-	.	Parent=Os02t0119400-01
Chr02	irgsp1_rep	CDS	1024190	1024404	.	-	0	Parent=Os02t0119400-01
Chr02	irgsp1_rep	CDS	1023352	1023453	.	-	1	Parent=Os02t0119400-01
Chr02	irgsp1_rep	CDS	1023102	1023205	.	-	1	Parent=Os02t0119400-01
Chr02	irgsp1_rep	CDS	1022750	1022850	.	-	2	Parent=Os02t0119400-01
Chr02	irgsp1_rep	CDS	1022627	1022671	.	-	0	Parent=Os02t0119400-01
Chr02	irgsp1_rep	CDS	1022387	1022518	.	-	0	Parent=Os02t0119400-01
Chr02	irgsp1_rep	three_prime_UTR	1022192	1022386	.	-	.	Parent=Os02t0119400-01
Chr02	irgsp1_rep	mRNA	1033934	1034488	.	+	.	ID=Os02t0119600-01;Name=Os02t0119600-01;Locus_id=Os02g0119600;Note=Conserved hypothetical protein.;Transcript_evidence=AK107964 (DDBJ%2C Best hit);ORF_evidence=A2X071 (UniProt);NIAS_FLcDNA=002-135-C12;TENOR=Os02t0119600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	1033934	1034242	.	+	0	Parent=Os02t0119600-01
Chr02	irgsp1_rep	three_prime_UTR	1034243	1034488	.	+	.	Parent=Os02t0119600-01
Chr02	irgsp1_rep	mRNA	1038399	1039710	.	-	.	ID=Os02t0119700-01;Name=Os02t0119700-01;Locus_id=Os02g0119700;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK108777 (DDBJ%2C Best hit);ORF_evidence=NP_001152190.1 (RefSeq);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=002-151-A01;Expression=AK108777;TENOR=Os02t0119700-01;KEGG=Os02t0119700-01
Chr02	irgsp1_rep	five_prime_UTR	1039651	1039710	.	-	.	Parent=Os02t0119700-01
Chr02	irgsp1_rep	CDS	1038547	1039650	.	-	0	Parent=Os02t0119700-01
Chr02	irgsp1_rep	three_prime_UTR	1038399	1038546	.	-	.	Parent=Os02t0119700-01
Chr02	irgsp1_rep	mRNA	1040541	1045783	.	+	.	ID=Os02t0119800-01;Name=Os02t0119800-01;Locus_id=Os02g0119800;CGSNL Gene Symbol=EPT1;CGSNL Gene Name=ETHANOLAMINE PHOSPHOTRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=OsEPT1;Oryzabase Gene Name Synonym(s)=ethanolamine phosphotransferase 1;Note=Similar to Aminoalcoholphosphotransferase.;Transcript_evidence=AK099224 (DDBJ%2C Best hit),AK068133 (DDBJ%2C Best hit);ORF_evidence=NP_001151915.1 (RefSeq);GO=Biological Process: phospholipid biosynthetic process (GO:0008654),Cellular Component: membrane (GO:0016020),Molecular Function: phosphotransferase activity%2C for other substituted phosphate groups (GO:0016780);InterPro=CDP-alcohol phosphatidyltransferase (IPR000462),Choline/ethanolamine phosphotransferase (IPR014472);NIAS_FLcDNA=J013091G02,J013131K20;Oryzabase=23623;Expression=AK099224;TENOR=Os02t0119800-01;KEGG=Os02t0119800-01 (EC:2.7.8.1)
Chr02	irgsp1_rep	five_prime_UTR	1040541	1040797	.	+	.	Parent=Os02t0119800-01
Chr02	irgsp1_rep	CDS	1040798	1040934	.	+	0	Parent=Os02t0119800-01
Chr02	irgsp1_rep	CDS	1041714	1041723	.	+	1	Parent=Os02t0119800-01
Chr02	irgsp1_rep	CDS	1041814	1041864	.	+	0	Parent=Os02t0119800-01
Chr02	irgsp1_rep	CDS	1041999	1042076	.	+	0	Parent=Os02t0119800-01
Chr02	irgsp1_rep	CDS	1042167	1042242	.	+	0	Parent=Os02t0119800-01
Chr02	irgsp1_rep	CDS	1042335	1042357	.	+	2	Parent=Os02t0119800-01
Chr02	irgsp1_rep	CDS	1042444	1042544	.	+	0	Parent=Os02t0119800-01
Chr02	irgsp1_rep	CDS	1042900	1042994	.	+	1	Parent=Os02t0119800-01
Chr02	irgsp1_rep	CDS	1043161	1043229	.	+	2	Parent=Os02t0119800-01
Chr02	irgsp1_rep	CDS	1043432	1043501	.	+	2	Parent=Os02t0119800-01
Chr02	irgsp1_rep	CDS	1043757	1043820	.	+	1	Parent=Os02t0119800-01
Chr02	irgsp1_rep	CDS	1043907	1043947	.	+	0	Parent=Os02t0119800-01
Chr02	irgsp1_rep	CDS	1044098	1044182	.	+	1	Parent=Os02t0119800-01
Chr02	irgsp1_rep	CDS	1044608	1044670	.	+	0	Parent=Os02t0119800-01
Chr02	irgsp1_rep	CDS	1044785	1044843	.	+	0	Parent=Os02t0119800-01
Chr02	irgsp1_rep	CDS	1044927	1044979	.	+	1	Parent=Os02t0119800-01
Chr02	irgsp1_rep	CDS	1045142	1045214	.	+	2	Parent=Os02t0119800-01
Chr02	irgsp1_rep	CDS	1045297	1045318	.	+	1	Parent=Os02t0119800-01
Chr02	irgsp1_rep	three_prime_UTR	1045319	1045783	.	+	.	Parent=Os02t0119800-01
Chr02	irgsp1_rep	mRNA	1041813	1045698	.	+	.	ID=Os02t0119800-02;Name=Os02t0119800-02;Locus_id=Os02g0119800;CGSNL Gene Symbol=EPT1;CGSNL Gene Name=ETHANOLAMINE PHOSPHOTRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=OsEPT1;Oryzabase Gene Name Synonym(s)=ethanolamine phosphotransferase 1;Note=Similar to ethanolaminephosphotransferase.;Transcript_evidence=AK059405 (DDBJ%2C Best hit);ORF_evidence=NP_001151915.1 (RefSeq);GO=Biological Process: phospholipid biosynthetic process (GO:0008654),Cellular Component: membrane (GO:0016020),Molecular Function: phosphotransferase activity%2C for other substituted phosphate groups (GO:0016780);InterPro=CDP-alcohol phosphatidyltransferase (IPR000462);NIAS_FLcDNA=001-027-B12;Oryzabase=23623;Expression=AK059405;TENOR=Os02t0119800-02;KEGG=Os02t0119800-02 (EC:2.7.8.1)
Chr02	irgsp1_rep	five_prime_UTR	1041813	1041813	.	+	.	Parent=Os02t0119800-02
Chr02	irgsp1_rep	CDS	1041814	1041864	.	+	0	Parent=Os02t0119800-02
Chr02	irgsp1_rep	CDS	1041999	1042076	.	+	0	Parent=Os02t0119800-02
Chr02	irgsp1_rep	CDS	1042167	1042242	.	+	0	Parent=Os02t0119800-02
Chr02	irgsp1_rep	CDS	1042335	1042357	.	+	2	Parent=Os02t0119800-02
Chr02	irgsp1_rep	CDS	1042444	1042544	.	+	0	Parent=Os02t0119800-02
Chr02	irgsp1_rep	CDS	1042900	1042994	.	+	1	Parent=Os02t0119800-02
Chr02	irgsp1_rep	CDS	1043161	1043229	.	+	2	Parent=Os02t0119800-02
Chr02	irgsp1_rep	CDS	1043432	1043501	.	+	2	Parent=Os02t0119800-02
Chr02	irgsp1_rep	CDS	1043757	1043820	.	+	1	Parent=Os02t0119800-02
Chr02	irgsp1_rep	CDS	1043907	1043947	.	+	0	Parent=Os02t0119800-02
Chr02	irgsp1_rep	CDS	1044098	1044182	.	+	1	Parent=Os02t0119800-02
Chr02	irgsp1_rep	CDS	1044608	1044670	.	+	0	Parent=Os02t0119800-02
Chr02	irgsp1_rep	CDS	1044785	1044843	.	+	0	Parent=Os02t0119800-02
Chr02	irgsp1_rep	CDS	1044927	1044979	.	+	1	Parent=Os02t0119800-02
Chr02	irgsp1_rep	CDS	1045142	1045214	.	+	2	Parent=Os02t0119800-02
Chr02	irgsp1_rep	CDS	1045297	1045318	.	+	1	Parent=Os02t0119800-02
Chr02	irgsp1_rep	three_prime_UTR	1045319	1045698	.	+	.	Parent=Os02t0119800-02
Chr02	irgsp1_rep	mRNA	1047669	1050120	.	-	.	ID=Os02t0120000-01;Name=Os02t0120000-01;Locus_id=Os02g0120000;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK067383 (DDBJ%2C Best hit),AK101590 (DDBJ%2C Best hit);ORF_evidence=B9F253 (UniProt);InterPro=Smr protein/MutS2 C-terminal (IPR002625),Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J013100B15,J033051C08;Expression=AK067383;TENOR=Os02t0120000-01;KEGG=Os02t0120000-01
Chr02	irgsp1_rep	five_prime_UTR	1050071	1050120	.	-	.	Parent=Os02t0120000-01
Chr02	irgsp1_rep	CDS	1049783	1050070	.	-	0	Parent=Os02t0120000-01
Chr02	irgsp1_rep	CDS	1048480	1049682	.	-	0	Parent=Os02t0120000-01
Chr02	irgsp1_rep	three_prime_UTR	1047669	1048479	.	-	.	Parent=Os02t0120000-01
Chr02	irgsp1_rep	mRNA	1050786	1056830	.	-	.	ID=Os02t0120100-01;Name=Os02t0120100-01;Locus_id=Os02g0120100;RAP-DB Gene Symbol Synonym(s)=OsACTPK1;CGSNL Gene Symbol=ACTPK1;CGSNL Gene Name=ACT DOMAIN CONTAINING PROTEIN KINASE 1;Oryzabase Gene Symbol Synonym(s)=OsACTPK1%2C ACTPK1-1%2C ACTPK1-2;Oryzabase Gene Name Synonym(s)=ACT domain containing protein kinase 1;Note=Serine/threonine/tyrosine protein kinase%2C STY kinase%2C Regulation of ammonium uptake;Transcript_evidence=AK103704;ORF_evidence=Q6YUS6;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),ACT domain (IPR002912),Protein kinase domain (IPR000719),Serine-threonine/tyrosine-protein kinase%2C catalytic domain (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J033136N12;Manual Curation=March 9%2C 2018;Literature_PMID=29356222;Oryzabase=22315;Expression=AK103704;TENOR=Os02t0120100-01;KEGG=Os02t0120100-01;Subcellular location=plasma membrane (GO:0005886)
Chr02	irgsp1_rep	five_prime_UTR	1056668	1056830	.	-	.	Parent=Os02t0120100-01
Chr02	irgsp1_rep	CDS	1056429	1056667	.	-	0	Parent=Os02t0120100-01
Chr02	irgsp1_rep	CDS	1056235	1056349	.	-	1	Parent=Os02t0120100-01
Chr02	irgsp1_rep	CDS	1055922	1056007	.	-	0	Parent=Os02t0120100-01
Chr02	irgsp1_rep	CDS	1055667	1055789	.	-	1	Parent=Os02t0120100-01
Chr02	irgsp1_rep	CDS	1054493	1054547	.	-	1	Parent=Os02t0120100-01
Chr02	irgsp1_rep	CDS	1054154	1054264	.	-	0	Parent=Os02t0120100-01
Chr02	irgsp1_rep	CDS	1053952	1054002	.	-	0	Parent=Os02t0120100-01
Chr02	irgsp1_rep	CDS	1053543	1053718	.	-	0	Parent=Os02t0120100-01
Chr02	irgsp1_rep	CDS	1053346	1053453	.	-	1	Parent=Os02t0120100-01
Chr02	irgsp1_rep	CDS	1053139	1053212	.	-	1	Parent=Os02t0120100-01
Chr02	irgsp1_rep	CDS	1052877	1053053	.	-	2	Parent=Os02t0120100-01
Chr02	irgsp1_rep	CDS	1052667	1052761	.	-	2	Parent=Os02t0120100-01
Chr02	irgsp1_rep	CDS	1052501	1052581	.	-	0	Parent=Os02t0120100-01
Chr02	irgsp1_rep	CDS	1052343	1052396	.	-	0	Parent=Os02t0120100-01
Chr02	irgsp1_rep	CDS	1051378	1051512	.	-	0	Parent=Os02t0120100-01
Chr02	irgsp1_rep	CDS	1051121	1051192	.	-	0	Parent=Os02t0120100-01
Chr02	irgsp1_rep	three_prime_UTR	1050786	1051120	.	-	.	Parent=Os02t0120100-01
Chr02	irgsp1_rep	mRNA	1050868	1053412	.	-	.	ID=Os02t0120100-02;Name=Os02t0120100-02;Locus_id=Os02g0120100;CGSNL Gene Symbol=ACTPK1;CGSNL Gene Name=ACT DOMAIN CONTAINING PROTEIN KINASE 1;Oryzabase Gene Symbol Synonym(s)=OsACTPK1%2C ACTPK1-1%2C ACTPK1-2;Oryzabase Gene Name Synonym(s)=ACT domain containing protein kinase 1;Note=Similar to ATP binding protein.;Transcript_evidence=AK060220 (DDBJ%2C Best hit);ORF_evidence=NP_001151481.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-002-F01;Oryzabase=22315;Expression=AK060220;TENOR=Os02t0120100-02;KEGG=Os02t0120100-02
Chr02	irgsp1_rep	five_prime_UTR	1053411	1053412	.	-	.	Parent=Os02t0120100-02
Chr02	irgsp1_rep	CDS	1053346	1053410	.	-	0	Parent=Os02t0120100-02
Chr02	irgsp1_rep	CDS	1053139	1053212	.	-	1	Parent=Os02t0120100-02
Chr02	irgsp1_rep	CDS	1052877	1053053	.	-	2	Parent=Os02t0120100-02
Chr02	irgsp1_rep	CDS	1052667	1052761	.	-	2	Parent=Os02t0120100-02
Chr02	irgsp1_rep	CDS	1052501	1052581	.	-	0	Parent=Os02t0120100-02
Chr02	irgsp1_rep	CDS	1052343	1052396	.	-	0	Parent=Os02t0120100-02
Chr02	irgsp1_rep	CDS	1051378	1051512	.	-	0	Parent=Os02t0120100-02
Chr02	irgsp1_rep	CDS	1051121	1051192	.	-	0	Parent=Os02t0120100-02
Chr02	irgsp1_rep	three_prime_UTR	1050868	1051120	.	-	.	Parent=Os02t0120100-02
Chr02	irgsp1_rep	mRNA	1061877	1066211	.	+	.	ID=Os02t0120200-01;Name=Os02t0120200-01;Locus_id=Os02g0120200;CGSNL Gene Symbol=PLDkappa;CGSNL Gene Name=PHOSPHOLIPASE D kappa;Oryzabase Gene Symbol Synonym(s)=OsPLDkappa;Note=Similar to Phospholipase D nu-2 (Fragment).;Transcript_evidence=AK110433 (DDBJ%2C Best hit);ORF_evidence=C5XSZ0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),Phospholipase D (IPR015679),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=002-166-B11;Oryzabase=8700;Expression=AK110433;TENOR=Os02t0120200-01;KEGG=Os02t0120200-01
Chr02	irgsp1_rep	five_prime_UTR	1061877	1061893	.	+	.	Parent=Os02t0120200-01
Chr02	irgsp1_rep	CDS	1061894	1062958	.	+	0	Parent=Os02t0120200-01
Chr02	irgsp1_rep	CDS	1063039	1063153	.	+	0	Parent=Os02t0120200-01
Chr02	irgsp1_rep	CDS	1063711	1064214	.	+	2	Parent=Os02t0120200-01
Chr02	irgsp1_rep	CDS	1064290	1064355	.	+	2	Parent=Os02t0120200-01
Chr02	irgsp1_rep	CDS	1064745	1064902	.	+	2	Parent=Os02t0120200-01
Chr02	irgsp1_rep	CDS	1065245	1066069	.	+	0	Parent=Os02t0120200-01
Chr02	irgsp1_rep	three_prime_UTR	1066070	1066211	.	+	.	Parent=Os02t0120200-01
Chr02	irgsp1_rep	mRNA	1067045	1069130	.	+	.	ID=Os02t0120300-01;Name=Os02t0120300-01;Locus_id=Os02g0120300;Note=Nicotinamide N-methyltransferase%2C putative domain containing protein.;Transcript_evidence=AK066100 (DDBJ%2C Best hit);ORF_evidence=B8AGK5 (UniProt);InterPro=Nicotinamide N-methyltransferase%2C putative (IPR019410);NIAS_FLcDNA=J013059H10;Expression=AK066100;TENOR=Os02t0120300-01;KEGG=Os02t0120300-01
Chr02	irgsp1_rep	five_prime_UTR	1067045	1067066	.	+	.	Parent=Os02t0120300-01
Chr02	irgsp1_rep	CDS	1067067	1067222	.	+	0	Parent=Os02t0120300-01
Chr02	irgsp1_rep	CDS	1067586	1067690	.	+	0	Parent=Os02t0120300-01
Chr02	irgsp1_rep	CDS	1067904	1067990	.	+	0	Parent=Os02t0120300-01
Chr02	irgsp1_rep	CDS	1068071	1068121	.	+	0	Parent=Os02t0120300-01
Chr02	irgsp1_rep	CDS	1068292	1068385	.	+	0	Parent=Os02t0120300-01
Chr02	irgsp1_rep	CDS	1068481	1068565	.	+	2	Parent=Os02t0120300-01
Chr02	irgsp1_rep	CDS	1068662	1068845	.	+	1	Parent=Os02t0120300-01
Chr02	irgsp1_rep	three_prime_UTR	1068846	1069130	.	+	.	Parent=Os02t0120300-01
Chr02	irgsp1_rep	mRNA	1069023	1072082	.	-	.	ID=Os02t0120400-01;Name=Os02t0120400-01;Locus_id=Os02g0120400;Note=Single hybrid motif domain containing protein.;Transcript_evidence=AK110518 (DDBJ%2C Best hit);ORF_evidence=E4MXA2 (UniProt);InterPro=Single hybrid motif (IPR011053);NIAS_FLcDNA=002-167-G11;Expression=AK110518;TENOR=Os02t0120400-01;KEGG=Os02t0120400-01
Chr02	irgsp1_rep	five_prime_UTR	1072007	1072082	.	-	.	Parent=Os02t0120400-01
Chr02	irgsp1_rep	CDS	1071993	1072006	.	-	0	Parent=Os02t0120400-01
Chr02	irgsp1_rep	CDS	1071256	1071291	.	-	1	Parent=Os02t0120400-01
Chr02	irgsp1_rep	CDS	1070768	1070894	.	-	1	Parent=Os02t0120400-01
Chr02	irgsp1_rep	CDS	1070601	1070671	.	-	0	Parent=Os02t0120400-01
Chr02	irgsp1_rep	CDS	1070443	1070515	.	-	1	Parent=Os02t0120400-01
Chr02	irgsp1_rep	CDS	1069636	1069749	.	-	0	Parent=Os02t0120400-01
Chr02	irgsp1_rep	three_prime_UTR	1069626	1069635	.	-	.	Parent=Os02t0120400-01
Chr02	irgsp1_rep	three_prime_UTR	1069023	1069487	.	-	.	Parent=Os02t0120400-01
Chr02	irgsp1_rep	mRNA	1073625	1076776	.	-	.	ID=Os02t0120500-01;Name=Os02t0120500-01;Locus_id=Os02g0120500;RAP-DB Gene Symbol Synonym(s)=TDR%2C tdr%2C OsbHLH005%2C OsbHLH5%2C bhlh5%2C TDR1;RAP-DB Gene Name Synonym(s)=TAPETUM DEGENERATION RETARDATION%2C tapetum degeneration retardation%2C basic helix loop helix 5%2C basic/helix-loop-helix 5;CGSNL Gene Symbol=TDR;CGSNL Gene Name=TAPETUM DEGENERATION RETARDATION;Oryzabase Gene Symbol Synonym(s)=tdr%2C OsbHLH005%2C bHLH005%2C OsbHLH5%2C bhlh5%2C TDR1%2C OsTDR%2C OsTDR1%2C OsMYC5%2C MYC5;Oryzabase Gene Name Synonym(s)=tapetum degeneration retardation%2C basic helix loop helix 5%2C basic/helix-loop-helix 5%2C Myelocytomatosis oncogene transcription factor 5;Note=Basic helix-loop-helix (bHLH) transcription factor%2C Tapetum development and degeneration;Transcript_evidence=AK119580 (Genbank);ORF_evidence=Q6YUS3 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=002-117-B12;Manual Curation=August 25%2C 2009;Literature_PMID=17138695;Oryzabase=7487;Expression=AK119580;TENOR=Os02t0120500-01;KEGG=Os02t0120500-01
Chr02	irgsp1_rep	five_prime_UTR	1076536	1076776	.	-	.	Parent=Os02t0120500-01
Chr02	irgsp1_rep	five_prime_UTR	1076181	1076198	.	-	.	Parent=Os02t0120500-01
Chr02	irgsp1_rep	CDS	1076020	1076180	.	-	0	Parent=Os02t0120500-01
Chr02	irgsp1_rep	CDS	1075800	1075904	.	-	1	Parent=Os02t0120500-01
Chr02	irgsp1_rep	CDS	1075620	1075671	.	-	1	Parent=Os02t0120500-01
Chr02	irgsp1_rep	CDS	1075421	1075513	.	-	0	Parent=Os02t0120500-01
Chr02	irgsp1_rep	CDS	1074686	1075213	.	-	0	Parent=Os02t0120500-01
Chr02	irgsp1_rep	CDS	1074113	1074595	.	-	0	Parent=Os02t0120500-01
Chr02	irgsp1_rep	CDS	1073790	1074026	.	-	0	Parent=Os02t0120500-01
Chr02	irgsp1_rep	three_prime_UTR	1073625	1073789	.	-	.	Parent=Os02t0120500-01
Chr02	irgsp1_rep	mRNA	1073553	1076645	.	-	.	ID=Os02t0120500-02;Name=Os02t0120500-02;Locus_id=Os02g0120500;CGSNL Gene Symbol=TDR;CGSNL Gene Name=TAPETUM DEGENERATION RETARDATION;Oryzabase Gene Symbol Synonym(s)=tdr%2C OsbHLH005%2C bHLH005%2C OsbHLH5%2C bhlh5%2C TDR1%2C OsTDR%2C OsTDR1%2C OsMYC5%2C MYC5;Oryzabase Gene Name Synonym(s)=tapetum degeneration retardation%2C basic helix loop helix 5%2C basic/helix-loop-helix 5%2C Myelocytomatosis oncogene transcription factor 5;Note=Similar to Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=AK106761 (DDBJ%2C Best hit);ORF_evidence=B6TPA8 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=002-115-D12;Oryzabase=7487;Expression=AK106761;TENOR=Os02t0120500-02;KEGG=Os02t0120500-02
Chr02	irgsp1_rep	five_prime_UTR	1076536	1076645	.	-	.	Parent=Os02t0120500-02
Chr02	irgsp1_rep	five_prime_UTR	1076181	1076198	.	-	.	Parent=Os02t0120500-02
Chr02	irgsp1_rep	CDS	1076020	1076180	.	-	0	Parent=Os02t0120500-02
Chr02	irgsp1_rep	CDS	1075800	1075904	.	-	1	Parent=Os02t0120500-02
Chr02	irgsp1_rep	CDS	1075620	1075671	.	-	1	Parent=Os02t0120500-02
Chr02	irgsp1_rep	CDS	1075421	1075513	.	-	0	Parent=Os02t0120500-02
Chr02	irgsp1_rep	CDS	1074686	1075213	.	-	0	Parent=Os02t0120500-02
Chr02	irgsp1_rep	CDS	1074113	1074595	.	-	0	Parent=Os02t0120500-02
Chr02	irgsp1_rep	CDS	1073790	1074026	.	-	0	Parent=Os02t0120500-02
Chr02	irgsp1_rep	three_prime_UTR	1073553	1073789	.	-	.	Parent=Os02t0120500-02
Chr02	irgsp1_rep	mRNA	1078475	1079650	.	+	.	ID=Os02t0120600-01;Name=Os02t0120600-01;Locus_id=Os02g0120600;CGSNL Gene Symbol=UBC13;CGSNL Gene Name=UBIQUITIN-CONJUGATING ENZYME 13;Oryzabase Gene Symbol Synonym(s)=OsUBC13;Oryzabase Gene Name Synonym(s)=Ubiquitin-conjugating enzyme 13;Note=Similar to Ubiquitin-conjugating enzyme E2-17 kDa 9 (EC 6.3.2.19) (Ubiquitin- protein ligase 9) (Ubiquitin carrier protein 9) (UBCAT4B).;Transcript_evidence=AK120237 (DDBJ%2C Best hit);ORF_evidence=B4FSG6 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135),Ubiquitin-conjugating enzyme%2C active site (IPR023313);NIAS_FLcDNA=J013043N18;Oryzabase=19560;Expression=AK120237;TENOR=Os02t0120600-01;KEGG=Os02t0120600-01 (EC:6.3.2.19)
Chr02	irgsp1_rep	five_prime_UTR	1078475	1078560	.	+	.	Parent=Os02t0120600-01
Chr02	irgsp1_rep	CDS	1078561	1078630	.	+	0	Parent=Os02t0120600-01
Chr02	irgsp1_rep	CDS	1078758	1078885	.	+	2	Parent=Os02t0120600-01
Chr02	irgsp1_rep	CDS	1079016	1079120	.	+	0	Parent=Os02t0120600-01
Chr02	irgsp1_rep	CDS	1079228	1079371	.	+	0	Parent=Os02t0120600-01
Chr02	irgsp1_rep	three_prime_UTR	1079372	1079650	.	+	.	Parent=Os02t0120600-01
Chr02	irgsp1_rep	mRNA	1078755	1079385	.	-	.	ID=Os02t0120700-00;Name=Os02t0120700-00;Locus_id=Os02g0120700;Note=Non-protein coding transcript.;Transcript_evidence=BT086907 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0120700-00
Chr02	irgsp1_rep	exon	1079213	1079385	.	-	.	Parent=Os02t0120700-00
Chr02	irgsp1_rep	exon	1079030	1079105	.	-	.	Parent=Os02t0120700-00
Chr02	irgsp1_rep	exon	1078755	1078896	.	-	.	Parent=Os02t0120700-00
Chr02	irgsp1_rep	mRNA	1080560	1084282	.	-	.	ID=Os02t0120800-01;Name=Os02t0120800-01;Locus_id=Os02g0120800;CGSNL Gene Symbol=RAC6;CGSNL Gene Name=RAC/ROP-TYPE GTPASE 6;Oryzabase Gene Symbol Synonym(s)=OsRacB%2C RacB%2C OsRac6;Oryzabase Gene Name Synonym(s)=Rac-like GTP-binding protein 6%2C GTPase protein RacB;Note=Similar to Small GTP-binding protein (Fragment).;Transcript_evidence=AK100842 (DDBJ%2C Best hit);ORF_evidence=NP_001105197.1 (RefSeq);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Cellular Component: membrane (GO:0016020),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C Ras type (IPR020849);NIAS_FLcDNA=J023123F22;Oryzabase=6293;Expression=AK100842;TENOR=Os02t0120800-01;KEGG=Os02t0120800-01
Chr02	irgsp1_rep	five_prime_UTR	1083856	1084282	.	-	.	Parent=Os02t0120800-01
Chr02	irgsp1_rep	CDS	1083757	1083855	.	-	0	Parent=Os02t0120800-01
Chr02	irgsp1_rep	CDS	1082591	1082678	.	-	0	Parent=Os02t0120800-01
Chr02	irgsp1_rep	CDS	1082398	1082507	.	-	2	Parent=Os02t0120800-01
Chr02	irgsp1_rep	CDS	1081938	1082001	.	-	0	Parent=Os02t0120800-01
Chr02	irgsp1_rep	CDS	1081306	1081370	.	-	2	Parent=Os02t0120800-01
Chr02	irgsp1_rep	CDS	1081111	1081176	.	-	0	Parent=Os02t0120800-01
Chr02	irgsp1_rep	CDS	1080923	1081024	.	-	0	Parent=Os02t0120800-01
Chr02	irgsp1_rep	three_prime_UTR	1080560	1080922	.	-	.	Parent=Os02t0120800-01
Chr02	irgsp1_rep	mRNA	1080513	1083952	.	-	.	ID=Os02t0120800-02;Name=Os02t0120800-02;Locus_id=Os02g0120800;CGSNL Gene Symbol=RAC6;CGSNL Gene Name=RAC/ROP-TYPE GTPASE 6;Oryzabase Gene Symbol Synonym(s)=OsRacB%2C RacB%2C OsRac6;Oryzabase Gene Name Synonym(s)=Rac-like GTP-binding protein 6%2C GTPase protein RacB;Note=Similar to Small GTP-binding protein (Fragment).;Transcript_evidence=AK069443 (DDBJ%2C Best hit);ORF_evidence=NP_001105197.1 (RefSeq);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Cellular Component: membrane (GO:0016020),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C Ras type (IPR020849);NIAS_FLcDNA=J023024G13;Oryzabase=6293;Expression=AK069443;TENOR=Os02t0120800-02;KEGG=Os02t0120800-02
Chr02	irgsp1_rep	five_prime_UTR	1083856	1083952	.	-	.	Parent=Os02t0120800-02
Chr02	irgsp1_rep	CDS	1083757	1083855	.	-	0	Parent=Os02t0120800-02
Chr02	irgsp1_rep	CDS	1082591	1082678	.	-	0	Parent=Os02t0120800-02
Chr02	irgsp1_rep	CDS	1082398	1082507	.	-	2	Parent=Os02t0120800-02
Chr02	irgsp1_rep	CDS	1081938	1082001	.	-	0	Parent=Os02t0120800-02
Chr02	irgsp1_rep	CDS	1081306	1081370	.	-	2	Parent=Os02t0120800-02
Chr02	irgsp1_rep	CDS	1081111	1081176	.	-	0	Parent=Os02t0120800-02
Chr02	irgsp1_rep	CDS	1080923	1081024	.	-	0	Parent=Os02t0120800-02
Chr02	irgsp1_rep	three_prime_UTR	1080513	1080922	.	-	.	Parent=Os02t0120800-02
Chr02	irgsp1_rep	mRNA	1080561	1082635	.	+	.	ID=Os02t0120850-00;Name=Os02t0120850-00;Locus_id=Os02g0120850;Note=Non-protein coding transcript.;Transcript_evidence=BT016448 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0120850-00
Chr02	irgsp1_rep	exon	1080561	1081021	.	+	.	Parent=Os02t0120850-00
Chr02	irgsp1_rep	exon	1081108	1081184	.	+	.	Parent=Os02t0120850-00
Chr02	irgsp1_rep	exon	1081314	1081376	.	+	.	Parent=Os02t0120850-00
Chr02	irgsp1_rep	exon	1081942	1081994	.	+	.	Parent=Os02t0120850-00
Chr02	irgsp1_rep	exon	1082390	1082512	.	+	.	Parent=Os02t0120850-00
Chr02	irgsp1_rep	exon	1082597	1082635	.	+	.	Parent=Os02t0120850-00
Chr02	irgsp1_rep	mRNA	1086193	1089622	.	-	.	ID=Os02t0120900-01;Name=Os02t0120900-01;Locus_id=Os02g0120900;Note=Tetrahydrofolate dehydrogenase/cyclohydrolase family protein.;Transcript_evidence=AK287915 (DDBJ%2C Best hit),AK288200 (DDBJ%2C Best hit);ORF_evidence=B6SJR7 (UniProt);GO=Biological Process: folic acid-containing compound biosynthetic process (GO:0009396),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: methylenetetrahydrofolate dehydrogenase (NADP+) activity (GO:0004488);InterPro=Tetrahydrofolate dehydrogenase/cyclohydrolase (IPR000672),NAD(P)-binding domain (IPR016040),Tetrahydrofolate dehydrogenase/cyclohydrolase%2C catalytic domain (IPR020630),Tetrahydrofolate dehydrogenase/cyclohydrolase%2C NAD(P)-binding domain (IPR020631),Tetrahydrofolate dehydrogenase/cyclohydrolase%2C conserved site (IPR020867);NIAS_FLcDNA=J065213N22,J090008H15;TENOR=Os02t0120900-01;KEGG=Os02t0120900-01 (EC:1.5.1.5%2C EC:3.5.4.9%2C EC:6.3.4.3)
Chr02	irgsp1_rep	five_prime_UTR	1089572	1089622	.	-	.	Parent=Os02t0120900-01
Chr02	irgsp1_rep	CDS	1089343	1089571	.	-	0	Parent=Os02t0120900-01
Chr02	irgsp1_rep	CDS	1088763	1089073	.	-	2	Parent=Os02t0120900-01
Chr02	irgsp1_rep	CDS	1087935	1088171	.	-	0	Parent=Os02t0120900-01
Chr02	irgsp1_rep	CDS	1087680	1087847	.	-	0	Parent=Os02t0120900-01
Chr02	irgsp1_rep	CDS	1086750	1086920	.	-	0	Parent=Os02t0120900-01
Chr02	irgsp1_rep	three_prime_UTR	1086193	1086749	.	-	.	Parent=Os02t0120900-01
Chr02	irgsp1_rep	mRNA	1090428	1095969	.	-	.	ID=Os02t0121000-01;Name=Os02t0121000-01;Locus_id=Os02g0121000;CGSNL Gene Symbol=ERS3;CGSNL Gene Name=GLUTAMYL-TRNA SYNTHETASE 3;Oryzabase Gene Symbol Synonym(s)=OsERS3;Oryzabase Gene Name Synonym(s)=glutamyl-tRNA synthetase 3;Note=Similar to Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA ligase) (GluRS).;Transcript_evidence=AK099931 (DDBJ%2C Best hit);ORF_evidence=Q43768 (UniProt);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: glutamyl-tRNA aminoacylation (GO:0006424),Biological Process: tRNA aminoacylation (GO:0043039),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: glutamate-tRNA ligase activity (GO:0004818),Molecular Function: ATP binding (GO:0005524),Molecular Function: ligase activity%2C forming aminoacyl-tRNA and related compounds (GO:0016876);InterPro=Glutamyl/glutaminyl-tRNA synthetase%2C class Ib (IPR000924),Aminoacyl-tRNA synthetase%2C class I%2C conserved site (IPR001412),Glutamyl-tRNA synthetase%2C class Ib%2C bacterial/mitochondrial (IPR004527),Aminoacyl-tRNA synthetase%2C class I%2C anticodon-binding (IPR008925),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Glutamyl/glutaminyl-tRNA synthetase%2C class Ib%2C catalytic domain (IPR020058),Glutamyl/glutaminyl-tRNA synthetase%2C class Ib%2C alpha-bundle domain (IPR020061),Aminoacyl-tRNA synthetase%2C class I%2C anticodon-binding domain%2C subdomain 2 (IPR020751);NIAS_FLcDNA=J013118M14;Oryzabase=22418;Expression=AK099931;TENOR=Os02t0121000-01;KEGG=Os02t0121000-01 (EC:6.1.1.17)
Chr02	irgsp1_rep	five_prime_UTR	1095960	1095969	.	-	.	Parent=Os02t0121000-01
Chr02	irgsp1_rep	CDS	1095605	1095959	.	-	0	Parent=Os02t0121000-01
Chr02	irgsp1_rep	CDS	1094378	1094499	.	-	2	Parent=Os02t0121000-01
Chr02	irgsp1_rep	CDS	1093918	1094100	.	-	0	Parent=Os02t0121000-01
Chr02	irgsp1_rep	CDS	1093672	1093790	.	-	0	Parent=Os02t0121000-01
Chr02	irgsp1_rep	CDS	1093542	1093590	.	-	1	Parent=Os02t0121000-01
Chr02	irgsp1_rep	CDS	1093331	1093432	.	-	0	Parent=Os02t0121000-01
Chr02	irgsp1_rep	CDS	1093107	1093209	.	-	0	Parent=Os02t0121000-01
Chr02	irgsp1_rep	CDS	1092940	1093003	.	-	2	Parent=Os02t0121000-01
Chr02	irgsp1_rep	CDS	1091786	1091900	.	-	1	Parent=Os02t0121000-01
Chr02	irgsp1_rep	CDS	1091538	1091638	.	-	0	Parent=Os02t0121000-01
Chr02	irgsp1_rep	CDS	1091205	1091361	.	-	1	Parent=Os02t0121000-01
Chr02	irgsp1_rep	CDS	1090653	1090886	.	-	0	Parent=Os02t0121000-01
Chr02	irgsp1_rep	three_prime_UTR	1090428	1090652	.	-	.	Parent=Os02t0121000-01
Chr02	irgsp1_rep	mRNA	1103076	1104294	.	-	.	ID=Os02t0121100-01;Name=Os02t0121100-01;Locus_id=Os02g0121100;Oryzabase Gene Symbol Synonym(s)=OsCSP1;Oryzabase Gene Name Synonym(s)=cold shock domain protein 1%2C CSD protein 1;Note=Zinc finger%2C CCHC-type domain containing protein.;Transcript_evidence=AK119758 (DDBJ%2C Best hit),AK070711 (DDBJ%2C Best hit);ORF_evidence=XP_002453214.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Cold-shock protein%2C DNA-binding (IPR002059),Cold shock protein (IPR011129),Nucleic acid-binding%2C OB-fold (IPR012340),Zinc finger%2C CCHC retroviral-type (IPR013084),Nucleic acid-binding%2C OB-fold-like (IPR016027),Cold-shock conserved site (IPR019844);NIAS_FLcDNA=002-171-F11,J023061H10;Oryzabase=14261;TENOR=Os02t0121100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	1104187	1104294	.	-	.	Parent=Os02t0121100-01
Chr02	irgsp1_rep	CDS	1103461	1104186	.	-	0	Parent=Os02t0121100-01
Chr02	irgsp1_rep	three_prime_UTR	1103076	1103460	.	-	.	Parent=Os02t0121100-01
Chr02	irgsp1_rep	mRNA	1106261	1111999	.	-	.	ID=Os02t0121200-01;Name=Os02t0121200-01;Locus_id=Os02g0121200;Note=S-adenosyl-L-methionine dependent methyltransferase%2C Mett10D%2C predicted domain containing protein.;Transcript_evidence=AK121751 (DDBJ%2C Best hit),AK070123 (DDBJ%2C Best hit);ORF_evidence=NP_179703.2 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=S-adenosyl-L-methionine dependent methyltransferase%2C predicted (IPR010286),S-adenosyl-L-methionine dependent methyltransferase%2C Mett10D%2C predicted (IPR017182);NIAS_FLcDNA=J033087I07,J023046N18;Expression=AK121751;TENOR=Os02t0121200-01;KEGG=Os02t0121200-01
Chr02	irgsp1_rep	five_prime_UTR	1111886	1111999	.	-	.	Parent=Os02t0121200-01
Chr02	irgsp1_rep	CDS	1111650	1111885	.	-	0	Parent=Os02t0121200-01
Chr02	irgsp1_rep	CDS	1110956	1111161	.	-	1	Parent=Os02t0121200-01
Chr02	irgsp1_rep	CDS	1110450	1110840	.	-	2	Parent=Os02t0121200-01
Chr02	irgsp1_rep	CDS	1110166	1110373	.	-	1	Parent=Os02t0121200-01
Chr02	irgsp1_rep	CDS	1109770	1109877	.	-	0	Parent=Os02t0121200-01
Chr02	irgsp1_rep	CDS	1109524	1109640	.	-	0	Parent=Os02t0121200-01
Chr02	irgsp1_rep	CDS	1109334	1109397	.	-	0	Parent=Os02t0121200-01
Chr02	irgsp1_rep	CDS	1106858	1106928	.	-	2	Parent=Os02t0121200-01
Chr02	irgsp1_rep	three_prime_UTR	1106261	1106857	.	-	.	Parent=Os02t0121200-01
Chr02	irgsp1_rep	mRNA	1116066	1116952	.	+	.	ID=Os02t0121300-01;Name=Os02t0121300-01;Locus_id=Os02g0121300;RAP-DB Gene Symbol Synonym(s)=LRT2%2C CYC2%2C cyc2*%2C cyc2%2C OsCYP2%2C Cyp2%2C OsCYP19-2%2C CYP19-2%2C OsCYP-2%2C OsCyp2-P%2C OsCyp2%2C OsCYP19-1%2C LRT2/OsCYP2%2C lrt2*%2C lrt2;RAP-DB Gene Name Synonym(s)=LATERAL ROOTLESS2%2C cyclophilin2%2C cyclophilin 2%2C cyclophilin-2%2C cyclophilin 19-2%2C LATERAL ROOTLESS 2%2C lateral-rootless 2%2C REDUCED GROWTH OF LATERAL ROOTS%2C reduced growth of lateral roots%2C lateral root-2;CGSNL Gene Symbol=LRT2;CGSNL Gene Name=LATERAL ROOTLESS2;Oryzabase Gene Symbol Synonym(s)=CYC2%2C cyc2*%2C cyc2%2C OsCYP2%2C Cyp2%2C OsCYP19-2%2C CYP19-2%2C OsCYP-2%2C OsCyp2-P%2C OsCyp2%2C OsCYP19-1%2C LRT2/OsCYP2%2C lrt2*%2C lrt2%2C Ppcti;Oryzabase Gene Name Synonym(s)=cyclophilin2%2C cyclophilin 2%2C cyclophilin-2%2C cyclophilin 19-2%2C LATERAL ROOTLESS 2%2C lateral-rootless 2%2C REDUCED GROWTH OF LATERAL ROOTS%2C reduced growth of lateral roots%2C lateral root-2%2C Peptidyl-prolyl cis-trans isomerase;Note=Cyclophilin%2C Peptidyl-prolyl cis-trans isomerase%2C Auxin signal transduction%2C Lateral root initiation%2C Stress tolerance;Transcript_evidence=AK061894;ORF_evidence=Q40673;GO=Biological Process: protein peptidyl-prolyl isomerization (GO:0000413),Biological Process: protein folding (GO:0006457),Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);InterPro=Cyclophilin-type peptidyl-prolyl cis-trans isomerase (IPR024936),Cyclophilin-like domain (IPR029000),Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain (IPR002130),Cyclophilin-type peptidyl-prolyl cis-trans isomerase%2C conserved site (IPR020892);NIAS_FLcDNA=001-041-G07,J013002N03;Manual Curation=May 12%2C 2014;Literature_PMID=23289750,8075400;Oryzabase=487;TENOR=Os02t0121300-01;KEGG=Os02t0121300-01 (EC:5.2.1.8)
Chr02	irgsp1_rep	five_prime_UTR	1116066	1116159	.	+	.	Parent=Os02t0121300-01
Chr02	irgsp1_rep	CDS	1116160	1116678	.	+	0	Parent=Os02t0121300-01
Chr02	irgsp1_rep	three_prime_UTR	1116679	1116952	.	+	.	Parent=Os02t0121300-01
Chr02	irgsp1_rep	mRNA	1123885	1125397	.	-	.	ID=Os02t0121400-00;Name=Os02t0121400-00;Locus_id=Os02g0121400;Note=Conserved hypothetical protein.;Transcript_evidence=AK360879 (DDBJ);ORF_evidence=Q6YUR4 (UniProt);TENOR=Os02t0121400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	1125359	1125397	.	-	.	Parent=Os02t0121400-00
Chr02	irgsp1_rep	CDS	1125020	1125358	.	-	0	Parent=Os02t0121400-00
Chr02	irgsp1_rep	CDS	1124841	1124903	.	-	0	Parent=Os02t0121400-00
Chr02	irgsp1_rep	CDS	1124599	1124673	.	-	0	Parent=Os02t0121400-00
Chr02	irgsp1_rep	CDS	1123890	1124192	.	-	0	Parent=Os02t0121400-00
Chr02	irgsp1_rep	three_prime_UTR	1123885	1123889	.	-	.	Parent=Os02t0121400-00
Chr02	irgsp1_rep	mRNA	1126062	1132613	.	-	.	ID=Os02t0121500-01;Name=Os02t0121500-01;Locus_id=Os02g0121500;Note=Conserved hypothetical protein.;Transcript_evidence=AK065791 (DDBJ%2C Best hit);ORF_evidence=Q6YUR3 (UniProt);NIAS_FLcDNA=J013043N01;Expression=AK065791;TENOR=Os02t0121500-01;KEGG=Os02t0121500-01
Chr02	irgsp1_rep	five_prime_UTR	1132420	1132613	.	-	.	Parent=Os02t0121500-01
Chr02	irgsp1_rep	five_prime_UTR	1131291	1131368	.	-	.	Parent=Os02t0121500-01
Chr02	irgsp1_rep	CDS	1131176	1131290	.	-	0	Parent=Os02t0121500-01
Chr02	irgsp1_rep	CDS	1129629	1129852	.	-	2	Parent=Os02t0121500-01
Chr02	irgsp1_rep	CDS	1129481	1129535	.	-	0	Parent=Os02t0121500-01
Chr02	irgsp1_rep	CDS	1128915	1129042	.	-	2	Parent=Os02t0121500-01
Chr02	irgsp1_rep	CDS	1128669	1128819	.	-	0	Parent=Os02t0121500-01
Chr02	irgsp1_rep	CDS	1128321	1128561	.	-	2	Parent=Os02t0121500-01
Chr02	irgsp1_rep	CDS	1128162	1128234	.	-	1	Parent=Os02t0121500-01
Chr02	irgsp1_rep	CDS	1128006	1128072	.	-	0	Parent=Os02t0121500-01
Chr02	irgsp1_rep	CDS	1127841	1127886	.	-	2	Parent=Os02t0121500-01
Chr02	irgsp1_rep	CDS	1127688	1127763	.	-	1	Parent=Os02t0121500-01
Chr02	irgsp1_rep	CDS	1127211	1127501	.	-	0	Parent=Os02t0121500-01
Chr02	irgsp1_rep	CDS	1126950	1127117	.	-	0	Parent=Os02t0121500-01
Chr02	irgsp1_rep	CDS	1126273	1126590	.	-	0	Parent=Os02t0121500-01
Chr02	irgsp1_rep	three_prime_UTR	1126062	1126272	.	-	.	Parent=Os02t0121500-01
Chr02	irgsp1_rep	mRNA	1137171	1139241	.	+	.	ID=Os02t0121600-01;Name=Os02t0121600-01;Locus_id=Os02g0121600;Note=Similar to Zinc finger A20 domain-containing stress-associated protein 18.;Transcript_evidence=AK105698 (DDBJ%2C Best hit);ORF_evidence=P0C282 (UniProt);NIAS_FLcDNA=001-201-D03;TENOR=Os02t0121600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	1137171	1138381	.	+	.	Parent=Os02t0121600-01
Chr02	irgsp1_rep	CDS	1138382	1138537	.	+	0	Parent=Os02t0121600-01
Chr02	irgsp1_rep	three_prime_UTR	1138538	1139241	.	+	.	Parent=Os02t0121600-01
Chr02	irgsp1_rep	mRNA	1145837	1151052	.	+	.	ID=Os02t0121700-01;Name=Os02t0121700-01;Locus_id=Os02g0121700;Oryzabase Gene Symbol Synonym(s)=OsTPS3%2C TPS3%2C OsLIS%2C LIS;Oryzabase Gene Name Synonym(s)=terpene synthase 3%2C linalool synthase;Note=Terpenoid synthase domain containing protein.;Transcript_evidence=AK110925 (DDBJ%2C Best hit);ORF_evidence=NP_001105854.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: lyase activity (GO:0016829);InterPro=Terpene synthase-like (IPR001906),Terpene synthase%2C metal-binding domain (IPR005630),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930),Terpenoid synthase (IPR008949);NIAS_FLcDNA=002-173-D07;Oryzabase=18705;Expression=AK110925;TENOR=Os02t0121700-01;KEGG=Os02t0121700-01
Chr02	irgsp1_rep	five_prime_UTR	1145837	1145888	.	+	.	Parent=Os02t0121700-01
Chr02	irgsp1_rep	CDS	1145889	1146119	.	+	0	Parent=Os02t0121700-01
Chr02	irgsp1_rep	CDS	1146682	1146955	.	+	0	Parent=Os02t0121700-01
Chr02	irgsp1_rep	CDS	1147309	1147684	.	+	2	Parent=Os02t0121700-01
Chr02	irgsp1_rep	CDS	1149021	1149239	.	+	1	Parent=Os02t0121700-01
Chr02	irgsp1_rep	CDS	1149572	1149710	.	+	1	Parent=Os02t0121700-01
Chr02	irgsp1_rep	CDS	1149844	1150092	.	+	0	Parent=Os02t0121700-01
Chr02	irgsp1_rep	CDS	1150556	1150855	.	+	0	Parent=Os02t0121700-01
Chr02	irgsp1_rep	three_prime_UTR	1150856	1151052	.	+	.	Parent=Os02t0121700-01
Chr02	irgsp1_rep	mRNA	1146764	1150857	.	-	.	ID=Os02t0121750-00;Name=Os02t0121750-00;Locus_id=Os02g0121750;Note=Hypothetical protein.;Transcript_evidence=tplb0025l04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0121750-00
Chr02	irgsp1_rep	five_prime_UTR	1150789	1150857	.	-	.	Parent=Os02t0121750-00
Chr02	irgsp1_rep	CDS	1150566	1150788	.	-	0	Parent=Os02t0121750-00
Chr02	irgsp1_rep	CDS	1149982	1150100	.	-	2	Parent=Os02t0121750-00
Chr02	irgsp1_rep	three_prime_UTR	1149844	1149981	.	-	.	Parent=Os02t0121750-00
Chr02	irgsp1_rep	three_prime_UTR	1149579	1149710	.	-	.	Parent=Os02t0121750-00
Chr02	irgsp1_rep	three_prime_UTR	1149018	1149245	.	-	.	Parent=Os02t0121750-00
Chr02	irgsp1_rep	three_prime_UTR	1147287	1147681	.	-	.	Parent=Os02t0121750-00
Chr02	irgsp1_rep	three_prime_UTR	1146764	1146934	.	-	.	Parent=Os02t0121750-00
Chr02	irgsp1_rep	mRNA	1151850	1154253	.	+	.	ID=Os02t0121800-01;Name=Os02t0121800-01;Locus_id=Os02g0121800;CGSNL Gene Symbol=SDH3;CGSNL Gene Name=SUCCINATE DEHYDROGENASE SUBUNIT 3;Oryzabase Gene Name Synonym(s)=SUCCINATE:UBIQUINONE OXIDOREDUCTASE;Note=Succinate dehydrogenase%2C cytoChrome b subunit family protein.;Transcript_evidence=AK103260 (DDBJ%2C Best hit);ORF_evidence=Q94FP2 (UniProt);GO=Molecular Function: oxidoreductase activity%2C acting on the CH-CH group of donors (GO:0016627);InterPro=Succinate dehydrogenase/Fumarate reductase%2C transmembrane subunit (IPR000701);NIAS_FLcDNA=J033124C12;Oryzabase=8749;Expression=AK103260;TENOR=Os02t0121800-01;KEGG=Os02t0121800-01
Chr02	irgsp1_rep	five_prime_UTR	1151850	1152012	.	+	.	Parent=Os02t0121800-01
Chr02	irgsp1_rep	five_prime_UTR	1152995	1152996	.	+	.	Parent=Os02t0121800-01
Chr02	irgsp1_rep	CDS	1152997	1153060	.	+	0	Parent=Os02t0121800-01
Chr02	irgsp1_rep	CDS	1153740	1154065	.	+	2	Parent=Os02t0121800-01
Chr02	irgsp1_rep	three_prime_UTR	1154066	1154253	.	+	.	Parent=Os02t0121800-01
Chr02	irgsp1_rep	mRNA	1154674	1156855	.	+	.	ID=Os02t0121900-01;Name=Os02t0121900-01;Locus_id=Os02g0121900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK109567 (DDBJ%2C Best hit);ORF_evidence=B8AH16 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-130-D10;Expression=AK109567;TENOR=Os02t0121900-01;KEGG=Os02t0121900-01
Chr02	irgsp1_rep	five_prime_UTR	1154674	1154694	.	+	.	Parent=Os02t0121900-01
Chr02	irgsp1_rep	CDS	1154695	1156569	.	+	0	Parent=Os02t0121900-01
Chr02	irgsp1_rep	three_prime_UTR	1156570	1156855	.	+	.	Parent=Os02t0121900-01
Chr02	irgsp1_rep	mRNA	1158885	1161181	.	-	.	ID=Os02t0122000-01;Name=Os02t0122000-01;Locus_id=Os02g0122000;CGSNL Gene Symbol=SAP18;Oryzabase Gene Symbol Synonym(s)=OsSAP18;Oryzabase Gene Name Synonym(s)=co-repressor OsSAP18;Note=Similar to P18.;Transcript_evidence=AK121653 (DDBJ%2C Best hit);ORF_evidence=B4FIB4 (UniProt);InterPro=Sin3 associated polypeptide p18 (IPR010516),Histone deacetylase complex%2C SAP18 subunit (IPR017250);NIAS_FLcDNA=J033061I03;Oryzabase=22439;Expression=AK121653;TENOR=Os02t0122000-01;KEGG=Os02t0122000-01
Chr02	irgsp1_rep	five_prime_UTR	1161077	1161181	.	-	.	Parent=Os02t0122000-01
Chr02	irgsp1_rep	CDS	1160963	1161076	.	-	0	Parent=Os02t0122000-01
Chr02	irgsp1_rep	CDS	1160768	1160800	.	-	0	Parent=Os02t0122000-01
Chr02	irgsp1_rep	CDS	1160248	1160358	.	-	0	Parent=Os02t0122000-01
Chr02	irgsp1_rep	CDS	1159957	1160052	.	-	0	Parent=Os02t0122000-01
Chr02	irgsp1_rep	CDS	1159348	1159419	.	-	0	Parent=Os02t0122000-01
Chr02	irgsp1_rep	CDS	1159231	1159263	.	-	0	Parent=Os02t0122000-01
Chr02	irgsp1_rep	three_prime_UTR	1158885	1159230	.	-	.	Parent=Os02t0122000-01
Chr02	irgsp1_rep	mRNA	1162134	1165062	.	+	.	ID=Os02t0122100-00;Name=Os02t0122100-00;Locus_id=Os02g0122100;CGSNL Gene Symbol=NTP4;CGSNL Gene Name=NUCLEOTIDYL TRANSFERASE PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OsNTP4;Oryzabase Gene Name Synonym(s)=nucleotidyl transferase protein 4;Note=Similar to JHL05D22.13 protein.;Transcript_evidence=BT067404 (DDBJ);ORF_evidence=E6NU32 (UniProt);GO=Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=PAP/25A-associated (IPR002058),Nucleotidyl transferase domain (IPR002934);Oryzabase=21887;TENOR=Os02t0122100-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	1162134	1162830	.	+	.	Parent=Os02t0122100-00
Chr02	irgsp1_rep	five_prime_UTR	1162888	1162912	.	+	.	Parent=Os02t0122100-00
Chr02	irgsp1_rep	CDS	1162913	1163317	.	+	0	Parent=Os02t0122100-00
Chr02	irgsp1_rep	CDS	1163606	1163829	.	+	0	Parent=Os02t0122100-00
Chr02	irgsp1_rep	CDS	1163929	1163992	.	+	1	Parent=Os02t0122100-00
Chr02	irgsp1_rep	CDS	1164521	1164717	.	+	0	Parent=Os02t0122100-00
Chr02	irgsp1_rep	CDS	1164849	1165062	.	+	1	Parent=Os02t0122100-00
Chr02	irgsp1_rep	mRNA	1166453	1173452	.	-	.	ID=Os02t0122200-00;Name=Os02t0122200-00;Locus_id=Os02g0122200;Note=Similar to predicted protein.;Transcript_evidence=tplb0005a23 (Wheat FLcDNA);ORF_evidence=B9F266 (UniProt);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);TENOR=Os02t0122200-00;KEGG=Os02t0122200-00
Chr02	irgsp1_rep	five_prime_UTR	1173450	1173452	.	-	.	Parent=Os02t0122200-00
Chr02	irgsp1_rep	CDS	1173074	1173449	.	-	0	Parent=Os02t0122200-00
Chr02	irgsp1_rep	CDS	1172770	1172864	.	-	2	Parent=Os02t0122200-00
Chr02	irgsp1_rep	CDS	1172034	1172142	.	-	0	Parent=Os02t0122200-00
Chr02	irgsp1_rep	CDS	1171677	1171732	.	-	2	Parent=Os02t0122200-00
Chr02	irgsp1_rep	CDS	1170797	1170852	.	-	0	Parent=Os02t0122200-00
Chr02	irgsp1_rep	CDS	1170322	1170460	.	-	1	Parent=Os02t0122200-00
Chr02	irgsp1_rep	CDS	1169733	1169870	.	-	0	Parent=Os02t0122200-00
Chr02	irgsp1_rep	CDS	1169587	1169655	.	-	0	Parent=Os02t0122200-00
Chr02	irgsp1_rep	CDS	1169373	1169483	.	-	0	Parent=Os02t0122200-00
Chr02	irgsp1_rep	CDS	1168420	1168548	.	-	0	Parent=Os02t0122200-00
Chr02	irgsp1_rep	CDS	1167734	1167811	.	-	0	Parent=Os02t0122200-00
Chr02	irgsp1_rep	CDS	1167370	1167447	.	-	0	Parent=Os02t0122200-00
Chr02	irgsp1_rep	three_prime_UTR	1167315	1167369	.	-	.	Parent=Os02t0122200-00
Chr02	irgsp1_rep	three_prime_UTR	1166453	1166790	.	-	.	Parent=Os02t0122200-00
Chr02	irgsp1_rep	mRNA	1173896	1177017	.	-	.	ID=Os02t0122300-01;Name=Os02t0122300-01;Locus_id=Os02g0122300;Oryzabase Gene Symbol Synonym(s)=BIP121;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 121%2C BRI1-interacting protein 121%2C brassinosteroid receptor kinase-interacting protein 121;Note=Translation initiation factor eIF3 subunit domain containing protein.;Transcript_evidence=AK106553 (DDBJ%2C Best hit);ORF_evidence=Q761Z3 (UniProt);InterPro=Translation initiation factor eIF3 subunit (IPR013906),Eukaryotic translation initiation factor 3-like domain (IPR023194);NIAS_FLcDNA=002-108-G08;Oryzabase=13702;TENOR=Os02t0122300-01
Chr02	irgsp1_rep	five_prime_UTR	1176786	1177017	.	-	.	Parent=Os02t0122300-01
Chr02	irgsp1_rep	CDS	1176773	1176785	.	-	0	Parent=Os02t0122300-01
Chr02	irgsp1_rep	CDS	1175647	1175768	.	-	2	Parent=Os02t0122300-01
Chr02	irgsp1_rep	CDS	1175005	1175156	.	-	0	Parent=Os02t0122300-01
Chr02	irgsp1_rep	CDS	1174673	1174823	.	-	1	Parent=Os02t0122300-01
Chr02	irgsp1_rep	CDS	1174429	1174588	.	-	0	Parent=Os02t0122300-01
Chr02	irgsp1_rep	CDS	1174224	1174321	.	-	2	Parent=Os02t0122300-01
Chr02	irgsp1_rep	three_prime_UTR	1173896	1174223	.	-	.	Parent=Os02t0122300-01
Chr02	irgsp1_rep	mRNA	1173912	1176992	.	-	.	ID=Os02t0122300-02;Name=Os02t0122300-02;Locus_id=Os02g0122300;Oryzabase Gene Symbol Synonym(s)=BIP121;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 121%2C BRI1-interacting protein 121%2C brassinosteroid receptor kinase-interacting protein 121;Note=Translation initiation factor eIF3 subunit domain containing protein.;Transcript_evidence=AK073059 (DDBJ%2C Best hit);ORF_evidence=Q761Z3 (UniProt);InterPro=Translation initiation factor eIF3 subunit (IPR013906),Eukaryotic translation initiation factor 3-like domain (IPR023194);NIAS_FLcDNA=J033022F16;Oryzabase=13702;TENOR=Os02t0122300-02
Chr02	irgsp1_rep	five_prime_UTR	1176786	1176992	.	-	.	Parent=Os02t0122300-02
Chr02	irgsp1_rep	CDS	1176773	1176785	.	-	0	Parent=Os02t0122300-02
Chr02	irgsp1_rep	CDS	1175647	1175768	.	-	2	Parent=Os02t0122300-02
Chr02	irgsp1_rep	CDS	1175005	1175156	.	-	0	Parent=Os02t0122300-02
Chr02	irgsp1_rep	CDS	1174673	1174823	.	-	1	Parent=Os02t0122300-02
Chr02	irgsp1_rep	CDS	1174429	1174588	.	-	0	Parent=Os02t0122300-02
Chr02	irgsp1_rep	CDS	1174224	1174321	.	-	2	Parent=Os02t0122300-02
Chr02	irgsp1_rep	three_prime_UTR	1173912	1174223	.	-	.	Parent=Os02t0122300-02
Chr02	irgsp1_rep	mRNA	1178891	1182734	.	-	.	ID=Os02t0122400-01;Name=Os02t0122400-01;Locus_id=Os02g0122400;Note=Similar to Plastid division protein.;Transcript_evidence=AK243371 (DDBJ%2C Best hit);ORF_evidence=Q7PC78 (UniProt);GO=Molecular Function: heat shock protein binding (GO:0031072);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623);NIAS_FLcDNA=J100062J07;TENOR=Os02t0122400-01;KEGG=Os02t0122400-01
Chr02	irgsp1_rep	five_prime_UTR	1182664	1182734	.	-	.	Parent=Os02t0122400-01
Chr02	irgsp1_rep	CDS	1182364	1182663	.	-	0	Parent=Os02t0122400-01
Chr02	irgsp1_rep	CDS	1181752	1181982	.	-	0	Parent=Os02t0122400-01
Chr02	irgsp1_rep	CDS	1181424	1181648	.	-	0	Parent=Os02t0122400-01
Chr02	irgsp1_rep	CDS	1180998	1181258	.	-	0	Parent=Os02t0122400-01
Chr02	irgsp1_rep	CDS	1180036	1180900	.	-	0	Parent=Os02t0122400-01
Chr02	irgsp1_rep	CDS	1179668	1179801	.	-	2	Parent=Os02t0122400-01
Chr02	irgsp1_rep	CDS	1179095	1179388	.	-	0	Parent=Os02t0122400-01
Chr02	irgsp1_rep	three_prime_UTR	1178891	1179094	.	-	.	Parent=Os02t0122400-01
Chr02	irgsp1_rep	mRNA	1185129	1186387	.	-	.	ID=Os02t0122500-00;Name=Os02t0122500-00;Locus_id=Os02g0122500;Note=Conserved hypothetical protein.;Transcript_evidence=CT835314 (DDBJ%2C Best hit);ORF_evidence=Q6Z728 (UniProt);TENOR=Os02t0122500-00;KEGG=Os02t0122500-00
Chr02	irgsp1_rep	five_prime_UTR	1186251	1186387	.	-	.	Parent=Os02t0122500-00
Chr02	irgsp1_rep	CDS	1185750	1186250	.	-	0	Parent=Os02t0122500-00
Chr02	irgsp1_rep	CDS	1185310	1185648	.	-	0	Parent=Os02t0122500-00
Chr02	irgsp1_rep	three_prime_UTR	1185129	1185309	.	-	.	Parent=Os02t0122500-00
Chr02	irgsp1_rep	mRNA	1187089	1187904	.	-	.	ID=Os02t0122600-00;Name=Os02t0122600-00;Locus_id=Os02g0122600;Note=EF-Hand type domain containing protein.;Transcript_evidence=CT835299 (DDBJ%2C Best hit);ORF_evidence=B6T0B8 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249);TENOR=Os02t0122600-00;KEGG=Os02t0122600-00
Chr02	irgsp1_rep	five_prime_UTR	1187852	1187904	.	-	.	Parent=Os02t0122600-00
Chr02	irgsp1_rep	CDS	1187408	1187851	.	-	0	Parent=Os02t0122600-00
Chr02	irgsp1_rep	three_prime_UTR	1187089	1187407	.	-	.	Parent=Os02t0122600-00
Chr02	irgsp1_rep	mRNA	1190846	1192461	.	+	.	ID=Os02t0122700-00;Name=Os02t0122700-00;Locus_id=Os02g0122700;Oryzabase Gene Symbol Synonym(s)=OsSET7%2C SDG730;Oryzabase Gene Name Synonym(s)=SET protein 7;Note=Similar to SET domain protein.;Transcript_evidence=ab initio prediction;ORF_evidence=XP_002318442.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=SET domain (IPR001214),Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-type%2C conserved site (IPR019786),Zinc finger%2C PHD-finger (IPR019787);Oryzabase=13375;TENOR=Os02t0122700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	1190846	1191134	.	+	0	Parent=Os02t0122700-00
Chr02	irgsp1_rep	CDS	1191235	1191347	.	+	2	Parent=Os02t0122700-00
Chr02	irgsp1_rep	CDS	1191645	1191958	.	+	0	Parent=Os02t0122700-00
Chr02	irgsp1_rep	CDS	1192302	1192461	.	+	1	Parent=Os02t0122700-00
Chr02	irgsp1_rep	mRNA	1193472	1197056	.	-	.	ID=Os02t0122800-01;Name=Os02t0122800-01;Locus_id=Os02g0122800;CGSNL Gene Symbol=RSP33;CGSNL Gene Name=RS domain protein 33;Oryzabase Gene Symbol Synonym(s)=OsRS33%2C Os-RS33%2C OsRSp33%2C Os-RSp33%2C RS33%2C RS33.2;Oryzabase Gene Name Synonym(s)=RS domain protein 33%2C RS subfamily protein 33;Note=Similar to Arginine/serine-rich splicing factor.;Transcript_evidence=AK065148 (DDBJ%2C Best hit);ORF_evidence=D8L816 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013002B03;Oryzabase=22751;TENOR=Os02t0122800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	1196904	1197056	.	-	.	Parent=Os02t0122800-01
Chr02	irgsp1_rep	five_prime_UTR	1195963	1196094	.	-	.	Parent=Os02t0122800-01
Chr02	irgsp1_rep	five_prime_UTR	1194758	1195251	.	-	.	Parent=Os02t0122800-01
Chr02	irgsp1_rep	CDS	1194629	1194757	.	-	0	Parent=Os02t0122800-01
Chr02	irgsp1_rep	CDS	1194307	1194542	.	-	0	Parent=Os02t0122800-01
Chr02	irgsp1_rep	CDS	1193822	1194175	.	-	1	Parent=Os02t0122800-01
Chr02	irgsp1_rep	CDS	1193696	1193726	.	-	1	Parent=Os02t0122800-01
Chr02	irgsp1_rep	three_prime_UTR	1193472	1193695	.	-	.	Parent=Os02t0122800-01
Chr02	irgsp1_rep	mRNA	1193388	1197056	.	-	.	ID=Os02t0122800-02;Name=Os02t0122800-02;Locus_id=Os02g0122800;CGSNL Gene Symbol=RSP33;CGSNL Gene Name=RS domain protein 33;Oryzabase Gene Symbol Synonym(s)=OsRS33%2C Os-RS33%2C OsRSp33%2C Os-RSp33%2C RS33%2C RS33.2;Oryzabase Gene Name Synonym(s)=RS domain protein 33%2C RS subfamily protein 33;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK121372 (DDBJ%2C Best hit),AK062255 (DDBJ%2C Best hit);ORF_evidence=NP_001147698.1 (RefSeq);NIAS_FLcDNA=J023126J16,001-047-G07;Oryzabase=22751;TENOR=Os02t0122800-02;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	1196904	1197056	.	-	.	Parent=Os02t0122800-02
Chr02	irgsp1_rep	five_prime_UTR	1196069	1196094	.	-	.	Parent=Os02t0122800-02
Chr02	irgsp1_rep	CDS	1195963	1196068	.	-	0	Parent=Os02t0122800-02
Chr02	irgsp1_rep	CDS	1194629	1194741	.	-	2	Parent=Os02t0122800-02
Chr02	irgsp1_rep	CDS	1194307	1194542	.	-	0	Parent=Os02t0122800-02
Chr02	irgsp1_rep	CDS	1193822	1194175	.	-	1	Parent=Os02t0122800-02
Chr02	irgsp1_rep	CDS	1193696	1193726	.	-	1	Parent=Os02t0122800-02
Chr02	irgsp1_rep	three_prime_UTR	1193388	1193695	.	-	.	Parent=Os02t0122800-02
Chr02	irgsp1_rep	mRNA	1199296	1202290	.	-	.	ID=Os02t0122900-01;Name=Os02t0122900-01;Locus_id=Os02g0122900;Note=Similar to Dimethyladenosine transferase.;Transcript_evidence=AK073966 (DDBJ%2C Best hit);ORF_evidence=D8L817 (UniProt);GO=Biological Process: rRNA modification (GO:0000154),Molecular Function: rRNA (adenine-N6%2CN6-)-dimethyltransferase activity (GO:0000179),Molecular Function: rRNA methyltransferase activity (GO:0008649);InterPro=Ribosomal RNA adenine methylase transferase (IPR001737);NIAS_FLcDNA=J033072D16;Expression=AK073966;TENOR=Os02t0122900-01;KEGG=Os02t0122900-01
Chr02	irgsp1_rep	CDS	1202084	1202290	.	-	0	Parent=Os02t0122900-01
Chr02	irgsp1_rep	CDS	1201787	1201975	.	-	0	Parent=Os02t0122900-01
Chr02	irgsp1_rep	three_prime_UTR	1200729	1201786	.	-	.	Parent=Os02t0122900-01
Chr02	irgsp1_rep	three_prime_UTR	1200519	1200614	.	-	.	Parent=Os02t0122900-01
Chr02	irgsp1_rep	three_prime_UTR	1200131	1200215	.	-	.	Parent=Os02t0122900-01
Chr02	irgsp1_rep	three_prime_UTR	1199488	1199540	.	-	.	Parent=Os02t0122900-01
Chr02	irgsp1_rep	three_prime_UTR	1199296	1199380	.	-	.	Parent=Os02t0122900-01
Chr02	irgsp1_rep	mRNA	1208014	1209752	.	-	.	ID=Os02t0123032-00;Name=Os02t0123032-00;Locus_id=Os02g0123032;Note=Hypothetical gene.;Transcript_evidence=BT016935 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0123032-00;KEGG=Os02t0123032-00
Chr02	irgsp1_rep	five_prime_UTR	1209639	1209752	.	-	.	Parent=Os02t0123032-00
Chr02	irgsp1_rep	CDS	1209575	1209638	.	-	0	Parent=Os02t0123032-00
Chr02	irgsp1_rep	CDS	1208507	1208660	.	-	2	Parent=Os02t0123032-00
Chr02	irgsp1_rep	CDS	1208325	1208343	.	-	1	Parent=Os02t0123032-00
Chr02	irgsp1_rep	three_prime_UTR	1208222	1208324	.	-	.	Parent=Os02t0123032-00
Chr02	irgsp1_rep	three_prime_UTR	1208014	1208090	.	-	.	Parent=Os02t0123032-00
Chr02	irgsp1_rep	mRNA	1207635	1211101	.	+	.	ID=Os02t0123100-01;Name=Os02t0123100-01;Locus_id=Os02g0123100;CGSNL Gene Symbol=CDC2-2;CGSNL Gene Name=CELL DIVISION CONTROL PROTEIN 2 HOMOLOG 2;Oryzabase Gene Symbol Synonym(s)=cdc2Os-2%2C CDC2Os-2%2C CDKA-2%2C CDKA%3B2%2C Orysa%3BCDKA%3B2%2C Rcdc2-2%2C OsCDKA%3B2%2C OsCDKA2%2C CDKA2;Oryzabase Gene Name Synonym(s)=Cell division control protein 2 homolog 2%2C Cyclin-dependent kinase A-2;Note=Similar to cDNA clone:J033034K16%2C full insert sequence.;Transcript_evidence=AK064363 (DDBJ%2C Best hit);ORF_evidence=B7ERM3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-108-B12;Oryzabase=6020;Expression=AK064363;TENOR=Os02t0123100-01;KEGG=Os02t0123100-01 (EC:2.7.11.22)
Chr02	irgsp1_rep	five_prime_UTR	1207635	1207635	.	+	.	Parent=Os02t0123100-01
Chr02	irgsp1_rep	CDS	1207636	1208081	.	+	0	Parent=Os02t0123100-01
Chr02	irgsp1_rep	CDS	1208212	1208329	.	+	1	Parent=Os02t0123100-01
Chr02	irgsp1_rep	CDS	1208495	1208668	.	+	0	Parent=Os02t0123100-01
Chr02	irgsp1_rep	CDS	1209588	1209751	.	+	0	Parent=Os02t0123100-01
Chr02	irgsp1_rep	CDS	1209861	1209948	.	+	1	Parent=Os02t0123100-01
Chr02	irgsp1_rep	CDS	1210125	1210178	.	+	0	Parent=Os02t0123100-01
Chr02	irgsp1_rep	CDS	1210798	1210884	.	+	0	Parent=Os02t0123100-01
Chr02	irgsp1_rep	three_prime_UTR	1210885	1211101	.	+	.	Parent=Os02t0123100-01
Chr02	irgsp1_rep	mRNA	1207649	1209243	.	+	.	ID=Os02t0123100-02;Name=Os02t0123100-02;Locus_id=Os02g0123100;CGSNL Gene Symbol=CDC2-2;CGSNL Gene Name=CELL DIVISION CONTROL PROTEIN 2 HOMOLOG 2;Oryzabase Gene Symbol Synonym(s)=cdc2Os-2%2C CDC2Os-2%2C CDKA-2%2C CDKA%3B2%2C Orysa%3BCDKA%3B2%2C Rcdc2-2%2C OsCDKA%3B2%2C OsCDKA2%2C CDKA2;Oryzabase Gene Name Synonym(s)=Cell division control protein 2 homolog 2%2C Cyclin-dependent kinase A-2;Note=Similar to cDNA clone:002-108-B12%2C full insert sequence.;Transcript_evidence=AK063438 (DDBJ%2C Best hit);ORF_evidence=B7E9N8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-115-E09;Oryzabase=6020;Expression=AK063438;TENOR=Os02t0123100-02;KEGG=Os02t0123100-02 (EC:2.7.11.22)
Chr02	irgsp1_rep	five_prime_UTR	1207649	1207650	.	+	.	Parent=Os02t0123100-02
Chr02	irgsp1_rep	CDS	1207651	1208085	.	+	0	Parent=Os02t0123100-02
Chr02	irgsp1_rep	three_prime_UTR	1208086	1209243	.	+	.	Parent=Os02t0123100-02
Chr02	irgsp1_rep	mRNA	1207654	1211091	.	+	.	ID=Os02t0123100-03;Name=Os02t0123100-03;Locus_id=Os02g0123100;CGSNL Gene Symbol=CDC2-2;CGSNL Gene Name=CELL DIVISION CONTROL PROTEIN 2 HOMOLOG 2;Oryzabase Gene Symbol Synonym(s)=cdc2Os-2%2C CDC2Os-2%2C CDKA-2%2C CDKA%3B2%2C Orysa%3BCDKA%3B2%2C Rcdc2-2%2C OsCDKA%3B2%2C OsCDKA2%2C CDKA2;Oryzabase Gene Name Synonym(s)=Cell division control protein 2 homolog 2%2C Cyclin-dependent kinase A-2;Note=Similar to Cyclin-dependent kinase A-2.;Transcript_evidence=AK101344 (DDBJ%2C Best hit);ORF_evidence=P29619 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033034K16;Oryzabase=6020;TENOR=Os02t0123100-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	1207654	1207759	.	+	.	Parent=Os02t0123100-03
Chr02	irgsp1_rep	CDS	1207760	1207768	.	+	0	Parent=Os02t0123100-03
Chr02	irgsp1_rep	CDS	1207897	1208081	.	+	0	Parent=Os02t0123100-03
Chr02	irgsp1_rep	CDS	1208212	1208329	.	+	1	Parent=Os02t0123100-03
Chr02	irgsp1_rep	CDS	1208495	1208668	.	+	0	Parent=Os02t0123100-03
Chr02	irgsp1_rep	CDS	1209588	1209751	.	+	0	Parent=Os02t0123100-03
Chr02	irgsp1_rep	CDS	1209861	1209948	.	+	1	Parent=Os02t0123100-03
Chr02	irgsp1_rep	CDS	1210125	1210178	.	+	0	Parent=Os02t0123100-03
Chr02	irgsp1_rep	CDS	1210798	1210884	.	+	0	Parent=Os02t0123100-03
Chr02	irgsp1_rep	three_prime_UTR	1210885	1211091	.	+	.	Parent=Os02t0123100-03
Chr02	irgsp1_rep	mRNA	1213163	1213225	.	-	.	ID=Os02t0123116-00;Name=Os02t0123116-00;Locus_id=Os02g0123116;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0123116-00
Chr02	irgsp1_rep	exon	1213163	1213225	.	-	.	Parent=Os02t0123116-00
Chr02	irgsp1_rep	mRNA	1214007	1218011	.	+	.	ID=Os02t0123200-01;Name=Os02t0123200-01;Locus_id=Os02g0123200;Note=Similar to SSE1.;Transcript_evidence=AK065876 (DDBJ%2C Best hit);ORF_evidence=B6TGL2 (UniProt);InterPro=Peroxisome membrane protein%2C Pex16 (IPR013919);NIAS_FLcDNA=J013047J07;TENOR=Os02t0123200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	1214007	1216090	.	+	.	Parent=Os02t0123200-01
Chr02	irgsp1_rep	CDS	1216091	1216308	.	+	0	Parent=Os02t0123200-01
Chr02	irgsp1_rep	CDS	1216413	1216738	.	+	1	Parent=Os02t0123200-01
Chr02	irgsp1_rep	CDS	1216860	1217123	.	+	2	Parent=Os02t0123200-01
Chr02	irgsp1_rep	CDS	1217221	1217290	.	+	2	Parent=Os02t0123200-01
Chr02	irgsp1_rep	CDS	1217377	1217438	.	+	1	Parent=Os02t0123200-01
Chr02	irgsp1_rep	CDS	1217537	1217598	.	+	2	Parent=Os02t0123200-01
Chr02	irgsp1_rep	three_prime_UTR	1217599	1218011	.	+	.	Parent=Os02t0123200-01
Chr02	irgsp1_rep	mRNA	1219823	1220052	.	+	.	ID=Os02t0123300-00;Name=Os02t0123300-00;Locus_id=Os02g0123300;Note=Eukaryotic translation initiation factor 3 subunit 8%2C N-terminal domain containing protein.;Transcript_evidence=FN556363 (DDBJ%2C Best hit);ORF_evidence=NP_001058804.1 (RefSeq);GO=Biological Process: translational initiation (GO:0006413),Cellular Component: eukaryotic translation initiation factor 3 complex (GO:0005852),Molecular Function: translation initiation factor activity (GO:0003743);InterPro=Eukaryotic translation initiation factor 3 subunit 8%2C N-terminal (IPR008905);TENOR=Os02t0123300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	1219823	1219863	.	+	.	Parent=Os02t0123300-00
Chr02	irgsp1_rep	CDS	1219864	1220052	.	+	0	Parent=Os02t0123300-00
Chr02	irgsp1_rep	mRNA	1223588	1226876	.	-	.	ID=Os02t0123400-01;Name=Os02t0123400-01;Locus_id=Os02g0123400;Note=Hypothetical conserved gene.;Transcript_evidence=AK242107 (DDBJ%2C Best hit);ORF_evidence=B9F273 (UniProt);NIAS_FLcDNA=J075145C22;TENOR=Os02t0123400-01;KEGG=Os02t0123400-01
Chr02	irgsp1_rep	five_prime_UTR	1226827	1226876	.	-	.	Parent=Os02t0123400-01
Chr02	irgsp1_rep	CDS	1225222	1226826	.	-	0	Parent=Os02t0123400-01
Chr02	irgsp1_rep	CDS	1225039	1225134	.	-	0	Parent=Os02t0123400-01
Chr02	irgsp1_rep	three_prime_UTR	1224988	1225038	.	-	.	Parent=Os02t0123400-01
Chr02	irgsp1_rep	three_prime_UTR	1224731	1224878	.	-	.	Parent=Os02t0123400-01
Chr02	irgsp1_rep	three_prime_UTR	1224404	1224649	.	-	.	Parent=Os02t0123400-01
Chr02	irgsp1_rep	three_prime_UTR	1223588	1224025	.	-	.	Parent=Os02t0123400-01
Chr02	irgsp1_rep	mRNA	1223829	1226915	.	+	.	ID=Os02t0123450-00;Name=Os02t0123450-00;Locus_id=Os02g0123450;Note=Hypothetical protein.;Transcript_evidence=tplb0047e23 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0123450-00
Chr02	irgsp1_rep	five_prime_UTR	1223829	1224046	.	+	.	Parent=Os02t0123450-00
Chr02	irgsp1_rep	five_prime_UTR	1224423	1224656	.	+	.	Parent=Os02t0123450-00
Chr02	irgsp1_rep	five_prime_UTR	1224739	1224874	.	+	.	Parent=Os02t0123450-00
Chr02	irgsp1_rep	five_prime_UTR	1224983	1225138	.	+	.	Parent=Os02t0123450-00
Chr02	irgsp1_rep	five_prime_UTR	1225224	1226323	.	+	.	Parent=Os02t0123450-00
Chr02	irgsp1_rep	CDS	1226324	1226878	.	+	0	Parent=Os02t0123450-00
Chr02	irgsp1_rep	three_prime_UTR	1226879	1226915	.	+	.	Parent=Os02t0123450-00
Chr02	irgsp1_rep	mRNA	1227310	1230217	.	-	.	ID=Os02t0123500-01;Name=Os02t0123500-01;Locus_id=Os02g0123500;Oryzabase Gene Symbol Synonym(s)=OsM6PR1%2C OsM6PR2%2C M6PR%2C OsS6PDH%2C S6PDH;Oryzabase Gene Name Synonym(s)=NADPH-dependent mannose-6-phosphate reductase%2C NADPH-dependent mannose-6-phosphate reductase 1%2C NADPH-dependent mannose-6-phosphate reductase 2%2C sorbitol-6-phosphate dehydrogenase;Note=Similar to NADPH-dependent mannose 6-phosphate reductase.;Transcript_evidence=AK070168 (DDBJ%2C Best hit);ORF_evidence=D8L838 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldo/keto reductase (IPR001395),Aldo/keto reductase%2C conserved site (IPR018170),Aldo/keto reductase subgroup (IPR020471),NADP-dependent oxidoreductase domain (IPR023210);NIAS_FLcDNA=J023042M07;Oryzabase=16699;Expression=AK070168;TENOR=Os02t0123500-01;KEGG=Os02t0123500-01 (EC:1.1.1.21)
Chr02	irgsp1_rep	five_prime_UTR	1230217	1230217	.	-	.	Parent=Os02t0123500-01
Chr02	irgsp1_rep	CDS	1229886	1230216	.	-	0	Parent=Os02t0123500-01
Chr02	irgsp1_rep	CDS	1229357	1229451	.	-	2	Parent=Os02t0123500-01
Chr02	irgsp1_rep	CDS	1228748	1228865	.	-	0	Parent=Os02t0123500-01
Chr02	irgsp1_rep	CDS	1228519	1228651	.	-	2	Parent=Os02t0123500-01
Chr02	irgsp1_rep	CDS	1227919	1228138	.	-	1	Parent=Os02t0123500-01
Chr02	irgsp1_rep	CDS	1227573	1227803	.	-	0	Parent=Os02t0123500-01
Chr02	irgsp1_rep	three_prime_UTR	1227310	1227572	.	-	.	Parent=Os02t0123500-01
Chr02	irgsp1_rep	mRNA	1227402	1230178	.	-	.	ID=Os02t0123500-02;Name=Os02t0123500-02;Locus_id=Os02g0123500;Oryzabase Gene Symbol Synonym(s)=OsM6PR1%2C OsM6PR2%2C M6PR%2C OsS6PDH%2C S6PDH;Oryzabase Gene Name Synonym(s)=NADPH-dependent mannose-6-phosphate reductase%2C NADPH-dependent mannose-6-phosphate reductase 1%2C NADPH-dependent mannose-6-phosphate reductase 2%2C sorbitol-6-phosphate dehydrogenase;Note=Similar to NADP-dependent D-sorbitol-6-phosphate dehydrogenase.;Transcript_evidence=AK104885 (DDBJ%2C Best hit);ORF_evidence=D8L838 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldo/keto reductase (IPR001395),Aldo/keto reductase%2C conserved site (IPR018170),Aldo/keto reductase subgroup (IPR020471),NADP-dependent oxidoreductase domain (IPR023210);NIAS_FLcDNA=001-045-A06;Oryzabase=16699;Expression=AK104885;TENOR=Os02t0123500-02;KEGG=Os02t0123500-02 (EC:1.1.1.21)
Chr02	irgsp1_rep	five_prime_UTR	1230049	1230178	.	-	.	Parent=Os02t0123500-02
Chr02	irgsp1_rep	CDS	1229886	1230048	.	-	0	Parent=Os02t0123500-02
Chr02	irgsp1_rep	CDS	1229357	1229451	.	-	2	Parent=Os02t0123500-02
Chr02	irgsp1_rep	CDS	1228748	1228865	.	-	0	Parent=Os02t0123500-02
Chr02	irgsp1_rep	CDS	1228519	1228651	.	-	2	Parent=Os02t0123500-02
Chr02	irgsp1_rep	CDS	1227919	1228138	.	-	1	Parent=Os02t0123500-02
Chr02	irgsp1_rep	CDS	1227573	1227803	.	-	0	Parent=Os02t0123500-02
Chr02	irgsp1_rep	three_prime_UTR	1227402	1227572	.	-	.	Parent=Os02t0123500-02
Chr02	irgsp1_rep	mRNA	1231098	1234484	.	-	.	ID=Os02t0123600-01;Name=Os02t0123600-01;Locus_id=Os02g0123600;Note=Similar to CDP-diacylglycerol--inositol 3-phosphatidyltransferase 1 (EC 2.7.8.11) (Phosphatidylinositol synthase 1) (PtdIns synthase 1) (PI synthase 1) (AtPIS1).;Transcript_evidence=AK072529 (DDBJ%2C Best hit);ORF_evidence=Q9AR90 (UniProt);GO=Biological Process: phospholipid biosynthetic process (GO:0008654),Cellular Component: membrane (GO:0016020),Molecular Function: phosphotransferase activity%2C for other substituted phosphate groups (GO:0016780);InterPro=CDP-alcohol phosphatidyltransferase (IPR000462),CDP-diacylglycerol-inositol 3-phosphatidyltransferase%2C eukaryote (IPR014387);NIAS_FLcDNA=J023127H01;Oryzabase=17789;Expression=AK072529;TENOR=Os02t0123600-01;KEGG=Os02t0123600-01 (EC:2.7.8.11)
Chr02	irgsp1_rep	five_prime_UTR	1234254	1234484	.	-	.	Parent=Os02t0123600-01
Chr02	irgsp1_rep	five_prime_UTR	1233730	1233802	.	-	.	Parent=Os02t0123600-01
Chr02	irgsp1_rep	CDS	1233669	1233729	.	-	0	Parent=Os02t0123600-01
Chr02	irgsp1_rep	CDS	1233383	1233467	.	-	2	Parent=Os02t0123600-01
Chr02	irgsp1_rep	CDS	1233255	1233304	.	-	1	Parent=Os02t0123600-01
Chr02	irgsp1_rep	CDS	1232980	1233019	.	-	2	Parent=Os02t0123600-01
Chr02	irgsp1_rep	CDS	1232849	1232893	.	-	1	Parent=Os02t0123600-01
Chr02	irgsp1_rep	CDS	1232700	1232765	.	-	1	Parent=Os02t0123600-01
Chr02	irgsp1_rep	CDS	1232329	1232443	.	-	1	Parent=Os02t0123600-01
Chr02	irgsp1_rep	CDS	1231974	1232030	.	-	0	Parent=Os02t0123600-01
Chr02	irgsp1_rep	CDS	1231789	1231887	.	-	0	Parent=Os02t0123600-01
Chr02	irgsp1_rep	CDS	1231444	1231497	.	-	0	Parent=Os02t0123600-01
Chr02	irgsp1_rep	three_prime_UTR	1231098	1231443	.	-	.	Parent=Os02t0123600-01
Chr02	irgsp1_rep	mRNA	1231184	1234422	.	-	.	ID=Os02t0123600-02;Name=Os02t0123600-02;Locus_id=Os02g0123600;Note=Similar to CDP-diacylglycerol--inositol 3-phosphatidyltransferase 1 (EC 2.7.8.11) (Phosphatidylinositol synthase 1) (PtdIns synthase 1) (PI synthase 1) (AtPIS1).;Transcript_evidence=AK104814 (DDBJ%2C Best hit);ORF_evidence=Q9AR90 (UniProt);GO=Biological Process: phospholipid biosynthetic process (GO:0008654),Cellular Component: membrane (GO:0016020),Molecular Function: phosphotransferase activity%2C for other substituted phosphate groups (GO:0016780);InterPro=CDP-alcohol phosphatidyltransferase (IPR000462),CDP-diacylglycerol-inositol 3-phosphatidyltransferase%2C eukaryote (IPR014387);NIAS_FLcDNA=001-040-H04;Oryzabase=17789;Expression=AK104814;TENOR=Os02t0123600-02;KEGG=Os02t0123600-02 (EC:2.7.8.11)
Chr02	irgsp1_rep	five_prime_UTR	1234254	1234422	.	-	.	Parent=Os02t0123600-02
Chr02	irgsp1_rep	five_prime_UTR	1233730	1233802	.	-	.	Parent=Os02t0123600-02
Chr02	irgsp1_rep	CDS	1233669	1233729	.	-	0	Parent=Os02t0123600-02
Chr02	irgsp1_rep	CDS	1233383	1233467	.	-	2	Parent=Os02t0123600-02
Chr02	irgsp1_rep	CDS	1233255	1233304	.	-	1	Parent=Os02t0123600-02
Chr02	irgsp1_rep	CDS	1232980	1233019	.	-	2	Parent=Os02t0123600-02
Chr02	irgsp1_rep	CDS	1232849	1232893	.	-	1	Parent=Os02t0123600-02
Chr02	irgsp1_rep	CDS	1232700	1232765	.	-	1	Parent=Os02t0123600-02
Chr02	irgsp1_rep	CDS	1232329	1232443	.	-	1	Parent=Os02t0123600-02
Chr02	irgsp1_rep	CDS	1231974	1232030	.	-	0	Parent=Os02t0123600-02
Chr02	irgsp1_rep	CDS	1231789	1231887	.	-	0	Parent=Os02t0123600-02
Chr02	irgsp1_rep	CDS	1231444	1231497	.	-	0	Parent=Os02t0123600-02
Chr02	irgsp1_rep	three_prime_UTR	1231184	1231443	.	-	.	Parent=Os02t0123600-02
Chr02	irgsp1_rep	mRNA	1237099	1240160	.	+	.	ID=Os02t0123700-01;Name=Os02t0123700-01;Locus_id=Os02g0123700;Oryzabase Gene Symbol Synonym(s)=OsGH9B15%2C OsGLU14%2C GH9B15%2C GLU14;Oryzabase Gene Name Synonym(s)=glycoside hydrolase OsGH9B15%2C glycoside hydrolase 9B15%2C endoglucanase 14;Note=Similar to CEL5%3DCELLULASE 5 (Fragment).;Transcript_evidence=AK106726 (DDBJ%2C Best hit);ORF_evidence=Q6Z715 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 9 (IPR001701),Six-hairpin glycosidase-like (IPR008928),Six-hairpin glycosidase (IPR012341),Glycoside hydrolase%2C family 9%2C active site (IPR018221);NIAS_FLcDNA=002-114-H03;Oryzabase=11715;Expression=AK106726;TENOR=Os02t0123700-01;KEGG=Os02t0123700-01
Chr02	irgsp1_rep	five_prime_UTR	1237099	1237166	.	+	.	Parent=Os02t0123700-01
Chr02	irgsp1_rep	CDS	1237167	1237820	.	+	0	Parent=Os02t0123700-01
Chr02	irgsp1_rep	CDS	1238053	1238142	.	+	0	Parent=Os02t0123700-01
Chr02	irgsp1_rep	CDS	1238689	1238841	.	+	0	Parent=Os02t0123700-01
Chr02	irgsp1_rep	CDS	1238934	1239045	.	+	0	Parent=Os02t0123700-01
Chr02	irgsp1_rep	CDS	1239460	1239623	.	+	2	Parent=Os02t0123700-01
Chr02	irgsp1_rep	CDS	1239709	1240047	.	+	0	Parent=Os02t0123700-01
Chr02	irgsp1_rep	three_prime_UTR	1240048	1240160	.	+	.	Parent=Os02t0123700-01
Chr02	irgsp1_rep	mRNA	1237214	1240022	.	-	.	ID=Os02t0123801-00;Name=Os02t0123801-00;Locus_id=Os02g0123801;Note=Hypothetical protein.;Transcript_evidence=tplb0042g22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0123801-00
Chr02	irgsp1_rep	five_prime_UTR	1240022	1240022	.	-	.	Parent=Os02t0123801-00
Chr02	irgsp1_rep	CDS	1239683	1240021	.	-	0	Parent=Os02t0123801-00
Chr02	irgsp1_rep	CDS	1239492	1239608	.	-	0	Parent=Os02t0123801-00
Chr02	irgsp1_rep	CDS	1239071	1239076	.	-	0	Parent=Os02t0123801-00
Chr02	irgsp1_rep	three_prime_UTR	1238924	1239070	.	-	.	Parent=Os02t0123801-00
Chr02	irgsp1_rep	three_prime_UTR	1238646	1238859	.	-	.	Parent=Os02t0123801-00
Chr02	irgsp1_rep	three_prime_UTR	1237214	1237859	.	-	.	Parent=Os02t0123801-00
Chr02	irgsp1_rep	mRNA	1249957	1250226	.	+	.	ID=Os02t0124000-01;Name=Os02t0124000-01;Locus_id=Os02g0124000;CGSNL Gene Symbol=AM31;CGSNL Gene Name=ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 31;Oryzabase Gene Symbol Synonym(s)=AM31;Note=Arbuscular mycorrhizal specific marker 31.;Transcript_evidence=EU953683 (DDBJ);ORF_evidence=Q6Z711 (UniProt);GO=Biological Process: response to wounding (GO:0009611),Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Proteinase inhibitor I13%2C potato inhibitor I (IPR000864);Oryzabase=8193;TENOR=Os02t0124000-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	1249957	1250016	.	+	.	Parent=Os02t0124000-01
Chr02	irgsp1_rep	CDS	1250017	1250226	.	+	0	Parent=Os02t0124000-01
Chr02	irgsp1_rep	mRNA	1262119	1262364	.	+	.	ID=Os02t0124300-01;Name=Os02t0124300-01;Locus_id=Os02g0124300;CGSNL Gene Symbol=AM24;CGSNL Gene Name=ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 24;Oryzabase Gene Symbol Synonym(s)=AM24;Note=Arbuscular mycorrhizal specific marker 24.;Transcript_evidence=FP099153 (DDBJ);ORF_evidence=Q6Z708 (UniProt);GO=Biological Process: response to wounding (GO:0009611),Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Proteinase inhibitor I13%2C potato inhibitor I (IPR000864);Oryzabase=8189;TENOR=Os02t0124300-01
Chr02	irgsp1_rep	CDS	1262119	1262364	.	+	0	Parent=Os02t0124300-01
Chr02	irgsp1_rep	mRNA	1263503	1264570	.	-	.	ID=Os02t0124400-01;Name=Os02t0124400-01;Locus_id=Os02g0124400;Note=D-arabinono-1%2C4-lactone oxidase domain containing protein.;Transcript_evidence=AK108718 (DDBJ%2C Best hit);ORF_evidence=Q53RM3 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: membrane (GO:0016020),Molecular Function: D-arabinono-1%2C4-lactone oxidase activity (GO:0003885);InterPro=D-arabinono-1%2C4-lactone oxidase (IPR007173),Plant-specific FAD-dependent oxidoreductase (IPR010030);NIAS_FLcDNA=002-150-B11;Expression=AK108718;TENOR=Os02t0124400-01;KEGG=Os02t0124400-01
Chr02	irgsp1_rep	five_prime_UTR	1264569	1264570	.	-	.	Parent=Os02t0124400-01
Chr02	irgsp1_rep	CDS	1263696	1264568	.	-	0	Parent=Os02t0124400-01
Chr02	irgsp1_rep	three_prime_UTR	1263503	1263695	.	-	.	Parent=Os02t0124400-01
Chr02	irgsp1_rep	mRNA	1263685	1265966	.	+	.	ID=Os02t0124501-00;Name=Os02t0124501-00;Locus_id=Os02g0124501;Note=Hypothetical protein.;Transcript_evidence=tplb0055e22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0124501-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	1263685	1263686	.	+	.	Parent=Os02t0124501-00
Chr02	irgsp1_rep	CDS	1263687	1264771	.	+	0	Parent=Os02t0124501-00
Chr02	irgsp1_rep	CDS	1265264	1265270	.	+	1	Parent=Os02t0124501-00
Chr02	irgsp1_rep	three_prime_UTR	1265271	1265966	.	+	.	Parent=Os02t0124501-00
Chr02	irgsp1_rep	mRNA	1271994	1272347	.	-	.	ID=Os02t0124550-00;Name=Os02t0124550-00;Locus_id=Os02g0124550;Note=Non-protein coding transcript.;Transcript_evidence=FP099177 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0124550-00
Chr02	irgsp1_rep	exon	1271994	1272347	.	-	.	Parent=Os02t0124550-00
Chr02	irgsp1_rep	mRNA	1273313	1273654	.	-	.	ID=Os02t0124599-00;Name=Os02t0124599-00;Locus_id=Os02g0124599;Note=Similar to FAD-binding domain-containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_182199.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: membrane (GO:0016020),Molecular Function: D-arabinono-1%2C4-lactone oxidase activity (GO:0003885);InterPro=D-arabinono-1%2C4-lactone oxidase (IPR007173);TENOR=Os02t0124599-00
Chr02	irgsp1_rep	CDS	1273313	1273654	.	-	0	Parent=Os02t0124599-00
Chr02	irgsp1_rep	mRNA	1274587	1275549	.	-	.	ID=Os02t0124600-00;Name=Os02t0124600-00;Locus_id=Os02g0124600;Note=Similar to FAD binding domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001152512.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=FAD linked oxidase%2C N-terminal (IPR006094),Plant-specific FAD-dependent oxidoreductase (IPR010030),FAD-binding%2C type 2 (IPR016166),FAD-linked oxidase%2C FAD-binding%2C subdomain 2 (IPR016168);TENOR=Os02t0124600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	1274587	1275549	.	-	0	Parent=Os02t0124600-00
Chr02	irgsp1_rep	mRNA	1273337	1275500	.	+	.	ID=Os02t0124650-00;Name=Os02t0124650-00;Locus_id=Os02g0124650;Note=Hypothetical protein.;Transcript_evidence=tplb0055e22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0124650-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	1273337	1274180	.	+	.	Parent=Os02t0124650-00
Chr02	irgsp1_rep	five_prime_UTR	1274623	1274734	.	+	.	Parent=Os02t0124650-00
Chr02	irgsp1_rep	CDS	1274735	1275500	.	+	0	Parent=Os02t0124650-00
Chr02	irgsp1_rep	mRNA	1283277	1288182	.	+	.	ID=Os02t0124700-01;Name=Os02t0124700-01;Locus_id=Os02g0124700;Note=Clathrin%2C heavy chain/VPS%2C 7-fold repeat domain containing protein.;Transcript_evidence=AK064457 (DDBJ%2C Best hit);ORF_evidence=B8AGY5 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Clathrin%2C heavy chain/VPS%2C 7-fold repeat (IPR000547),Zinc finger%2C RING-type (IPR001841);NIAS_FLcDNA=002-110-F12;TENOR=Os02t0124700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	1283277	1283277	.	+	.	Parent=Os02t0124700-01
Chr02	irgsp1_rep	CDS	1283278	1283574	.	+	0	Parent=Os02t0124700-01
Chr02	irgsp1_rep	CDS	1284082	1284369	.	+	0	Parent=Os02t0124700-01
Chr02	irgsp1_rep	CDS	1284472	1284581	.	+	0	Parent=Os02t0124700-01
Chr02	irgsp1_rep	CDS	1285309	1285639	.	+	1	Parent=Os02t0124700-01
Chr02	irgsp1_rep	CDS	1285968	1286369	.	+	0	Parent=Os02t0124700-01
Chr02	irgsp1_rep	CDS	1286626	1286860	.	+	0	Parent=Os02t0124700-01
Chr02	irgsp1_rep	CDS	1286963	1286988	.	+	2	Parent=Os02t0124700-01
Chr02	irgsp1_rep	three_prime_UTR	1286989	1287029	.	+	.	Parent=Os02t0124700-01
Chr02	irgsp1_rep	three_prime_UTR	1287619	1287792	.	+	.	Parent=Os02t0124700-01
Chr02	irgsp1_rep	three_prime_UTR	1287859	1288182	.	+	.	Parent=Os02t0124700-01
Chr02	irgsp1_rep	mRNA	1288998	1289511	.	-	.	ID=Os02t0124800-01;Name=Os02t0124800-01;Locus_id=Os02g0124800;Note=Conserved hypothetical protein.;Transcript_evidence=AK058547 (DDBJ%2C Best hit);ORF_evidence=Q6Z705 (UniProt);NIAS_FLcDNA=001-017-C05;TENOR=Os02t0124800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	1289511	1289511	.	-	.	Parent=Os02t0124800-01
Chr02	irgsp1_rep	CDS	1289442	1289510	.	-	0	Parent=Os02t0124800-01
Chr02	irgsp1_rep	three_prime_UTR	1288998	1289441	.	-	.	Parent=Os02t0124800-01
Chr02	irgsp1_rep	mRNA	1289896	1291737	.	+	.	ID=Os02t0124866-01;Name=Os02t0124866-01;Locus_id=Os02g0124866;Note=Hypothetical gene.;Transcript_evidence=AK288719 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090062J15;TENOR=Os02t0124866-01;KEGG=Os02t0124866-01
Chr02	irgsp1_rep	five_prime_UTR	1289896	1291162	.	+	.	Parent=Os02t0124866-01
Chr02	irgsp1_rep	CDS	1291163	1291516	.	+	0	Parent=Os02t0124866-01
Chr02	irgsp1_rep	three_prime_UTR	1291517	1291737	.	+	.	Parent=Os02t0124866-01
Chr02	irgsp1_rep	mRNA	1302273	1304291	.	+	.	ID=Os02t0125000-01;Name=Os02t0125000-01;Locus_id=Os02g0125000;Note=Similar to LPA2 (low psii accumulation2).;Transcript_evidence=AK105873 (DDBJ%2C Best hit);ORF_evidence=NP_001032057.1 (RefSeq);NIAS_FLcDNA=001-204-B05;Expression=AK105873;TENOR=Os02t0125000-01;KEGG=Os02t0125000-01
Chr02	irgsp1_rep	five_prime_UTR	1302273	1302357	.	+	.	Parent=Os02t0125000-01
Chr02	irgsp1_rep	CDS	1302358	1302781	.	+	0	Parent=Os02t0125000-01
Chr02	irgsp1_rep	CDS	1303330	1303469	.	+	2	Parent=Os02t0125000-01
Chr02	irgsp1_rep	three_prime_UTR	1303470	1303483	.	+	.	Parent=Os02t0125000-01
Chr02	irgsp1_rep	three_prime_UTR	1303794	1304291	.	+	.	Parent=Os02t0125000-01
Chr02	irgsp1_rep	mRNA	1303847	1304317	.	+	.	ID=Os02t0125000-02;Name=Os02t0125000-02;Locus_id=Os02g0125000;Note=Non-protein coding transcript.;Transcript_evidence=AK062350 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-101-G03;TENOR=Os02t0125000-02
Chr02	irgsp1_rep	exon	1303847	1304317	.	+	.	Parent=Os02t0125000-02
Chr02	irgsp1_rep	mRNA	1304905	1309799	.	-	.	ID=Os02t0125100-01;Name=Os02t0125100-01;Locus_id=Os02g0125100;Note=Homoaconitase/3-isopropylmalate dehydratase%2C small/large subunit domain containing protein.;Transcript_evidence=AK101889 (DDBJ%2C Best hit);ORF_evidence=B6U6T6 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: cellular amino acid biosynthetic process (GO:0008652),Molecular Function: hydro-lyase activity (GO:0016836),Molecular Function: 4 iron%2C 4 sulfur cluster binding (GO:0051539);InterPro=Aconitase/3-isopropylmalate dehydratase large subunit%2C alpha/beta/alpha (IPR001030),Homoaconitase/3-isopropylmalate dehydratase%2C large subunit (IPR006251),Aconitase/3-isopropylmalate dehydratase large subunit%2C alpha/beta/alpha%2C subdomain 1/3 (IPR015931),Aconitase/3-isopropylmalate dehydratase large subunit%2C alpha/beta/alpha%2C subdomain 2 (IPR015932),Aconitase/isopropylmalate dehydratase (IPR015937);NIAS_FLcDNA=J033070M16;Expression=AK101889;TENOR=Os02t0125100-01;KEGG=Os02t0125100-01 (EC:4.2.1.33%2C EC:4.2.1.35)
Chr02	irgsp1_rep	five_prime_UTR	1309748	1309799	.	-	.	Parent=Os02t0125100-01
Chr02	irgsp1_rep	CDS	1309688	1309747	.	-	0	Parent=Os02t0125100-01
Chr02	irgsp1_rep	CDS	1309447	1309587	.	-	0	Parent=Os02t0125100-01
Chr02	irgsp1_rep	CDS	1309035	1309358	.	-	0	Parent=Os02t0125100-01
Chr02	irgsp1_rep	CDS	1308843	1308911	.	-	0	Parent=Os02t0125100-01
Chr02	irgsp1_rep	CDS	1308648	1308764	.	-	0	Parent=Os02t0125100-01
Chr02	irgsp1_rep	CDS	1308169	1308243	.	-	0	Parent=Os02t0125100-01
Chr02	irgsp1_rep	CDS	1308001	1308078	.	-	0	Parent=Os02t0125100-01
Chr02	irgsp1_rep	CDS	1307822	1307917	.	-	0	Parent=Os02t0125100-01
Chr02	irgsp1_rep	CDS	1307600	1307649	.	-	0	Parent=Os02t0125100-01
Chr02	irgsp1_rep	CDS	1306842	1306896	.	-	1	Parent=Os02t0125100-01
Chr02	irgsp1_rep	CDS	1306621	1306752	.	-	0	Parent=Os02t0125100-01
Chr02	irgsp1_rep	CDS	1305922	1305969	.	-	0	Parent=Os02t0125100-01
Chr02	irgsp1_rep	CDS	1305677	1305835	.	-	0	Parent=Os02t0125100-01
Chr02	irgsp1_rep	CDS	1305109	1305249	.	-	0	Parent=Os02t0125100-01
Chr02	irgsp1_rep	three_prime_UTR	1304905	1305108	.	-	.	Parent=Os02t0125100-01
Chr02	irgsp1_rep	mRNA	1313881	1318611	.	+	.	ID=Os02t0125200-00;Name=Os02t0125200-00;Locus_id=Os02g0125200;Note=Similar to DNA-binding protein.;Transcript_evidence=BT034978 (DDBJ);ORF_evidence=B4FRV0 (UniProt);InterPro=Domain of unknown function DUF296 (IPR005175);TENOR=Os02t0125200-00;KEGG=Os02t0125200-00
Chr02	irgsp1_rep	five_prime_UTR	1313881	1314169	.	+	.	Parent=Os02t0125200-00
Chr02	irgsp1_rep	CDS	1314170	1314414	.	+	0	Parent=Os02t0125200-00
Chr02	irgsp1_rep	CDS	1314489	1314661	.	+	1	Parent=Os02t0125200-00
Chr02	irgsp1_rep	CDS	1315656	1315723	.	+	2	Parent=Os02t0125200-00
Chr02	irgsp1_rep	CDS	1315834	1315965	.	+	0	Parent=Os02t0125200-00
Chr02	irgsp1_rep	CDS	1317581	1317742	.	+	0	Parent=Os02t0125200-00
Chr02	irgsp1_rep	CDS	1318288	1318611	.	+	0	Parent=Os02t0125200-00
Chr02	irgsp1_rep	mRNA	1326923	1330305	.	+	.	ID=Os02t0125300-01;Name=Os02t0125300-01;Locus_id=Os02g0125300;Oryzabase Gene Symbol Synonym(s)=OsBI-1%2C OsBI1%2C BI1;Oryzabase Gene Name Synonym(s)=Bax inhibitor-1;Note=Bax inhibitor-1 (BI-1) (OsBI-1).;Transcript_evidence=AK101060 (DDBJ%2C Best hit),AK061953 (DDBJ%2C Best hit);ORF_evidence=Q9MBD8 (UniProt);GO=Biological Process: negative regulation of apoptosis (GO:0043066),Cellular Component: integral to membrane (GO:0016021);InterPro=Bax inhibitor 1%2C conserved site (IPR006213),Inhibitor of apoptosis-promoting Bax1-related (IPR006214);NIAS_FLcDNA=J033022C21,001-042-F03;Oryzabase=11547;TENOR=Os02t0125300-01
Chr02	irgsp1_rep	five_prime_UTR	1326923	1327070	.	+	.	Parent=Os02t0125300-01
Chr02	irgsp1_rep	CDS	1327071	1327187	.	+	0	Parent=Os02t0125300-01
Chr02	irgsp1_rep	CDS	1328060	1328203	.	+	0	Parent=Os02t0125300-01
Chr02	irgsp1_rep	CDS	1328340	1328431	.	+	0	Parent=Os02t0125300-01
Chr02	irgsp1_rep	CDS	1329393	1329579	.	+	1	Parent=Os02t0125300-01
Chr02	irgsp1_rep	CDS	1329676	1329831	.	+	0	Parent=Os02t0125300-01
Chr02	irgsp1_rep	CDS	1329959	1330012	.	+	0	Parent=Os02t0125300-01
Chr02	irgsp1_rep	three_prime_UTR	1330013	1330305	.	+	.	Parent=Os02t0125300-01
Chr02	irgsp1_rep	mRNA	1327043	1330305	.	+	.	ID=Os02t0125300-02;Name=Os02t0125300-02;Locus_id=Os02g0125300;Oryzabase Gene Symbol Synonym(s)=OsBI-1%2C OsBI1%2C BI1;Oryzabase Gene Name Synonym(s)=Bax inhibitor-1;Note=Bax inhibitor-1 (BI-1) (OsBI-1).;Transcript_evidence=AK061564 (DDBJ%2C Best hit);ORF_evidence=Q9MBD8 (UniProt);GO=Biological Process: negative regulation of apoptosis (GO:0043066),Cellular Component: integral to membrane (GO:0016021);InterPro=Bax inhibitor 1%2C conserved site (IPR006213),Inhibitor of apoptosis-promoting Bax1-related (IPR006214);NIAS_FLcDNA=006-311-E05;Oryzabase=11547;Expression=AK061564;TENOR=Os02t0125300-02;KEGG=Os02t0125300-02
Chr02	irgsp1_rep	five_prime_UTR	1327043	1327070	.	+	.	Parent=Os02t0125300-02
Chr02	irgsp1_rep	CDS	1327071	1327187	.	+	0	Parent=Os02t0125300-02
Chr02	irgsp1_rep	CDS	1328060	1328203	.	+	0	Parent=Os02t0125300-02
Chr02	irgsp1_rep	CDS	1328340	1328431	.	+	0	Parent=Os02t0125300-02
Chr02	irgsp1_rep	CDS	1329393	1329579	.	+	1	Parent=Os02t0125300-02
Chr02	irgsp1_rep	CDS	1329676	1329831	.	+	0	Parent=Os02t0125300-02
Chr02	irgsp1_rep	CDS	1329959	1330012	.	+	0	Parent=Os02t0125300-02
Chr02	irgsp1_rep	three_prime_UTR	1330013	1330305	.	+	.	Parent=Os02t0125300-02
Chr02	irgsp1_rep	mRNA	1327070	1329859	.	-	.	ID=Os02t0125350-00;Name=Os02t0125350-00;Locus_id=Os02g0125350;Note=Hypothetical gene.;Transcript_evidence=EU951734 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0125350-00
Chr02	irgsp1_rep	five_prime_UTR	1329352	1329859	.	-	.	Parent=Os02t0125350-00
Chr02	irgsp1_rep	five_prime_UTR	1328329	1328473	.	-	.	Parent=Os02t0125350-00
Chr02	irgsp1_rep	five_prime_UTR	1328170	1328193	.	-	.	Parent=Os02t0125350-00
Chr02	irgsp1_rep	CDS	1328066	1328169	.	-	0	Parent=Os02t0125350-00
Chr02	irgsp1_rep	CDS	1327070	1327284	.	-	1	Parent=Os02t0125350-00
Chr02	irgsp1_rep	mRNA	1331347	1333420	.	+	.	ID=Os02t0125400-01;Name=Os02t0125400-01;Locus_id=Os02g0125400;RAP-DB Gene Symbol Synonym(s)=OsCYCP4%3B3;RAP-DB Gene Name Synonym(s)=P-type cyclin 4%3B3;Oryzabase Gene Symbol Synonym(s)=OsCYCP4%3B3;Oryzabase Gene Name Synonym(s)=P-type cyclin 4%3B3;Note=P-type cyclin%2C PHO80 homologous protein;Transcript_evidence=AK287583;ORF_evidence=Q6Z2N6;GO=Biological Process: regulation of cyclin-dependent protein serine/threonine kinase activity (GO:0000079),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin-like superfamily (IPR036915),Cyclin PHO80-like (IPR013922);NIAS_FLcDNA=J065042O03;Manual Curation=November 13%2C 2019;Literature_PMID=31697021,25315105;Oryzabase=18623;TENOR=Os02t0125400-01;KEGG=Os02t0125400-01
Chr02	irgsp1_rep	five_prime_UTR	1331347	1331396	.	+	.	Parent=Os02t0125400-01
Chr02	irgsp1_rep	CDS	1331397	1331821	.	+	0	Parent=Os02t0125400-01
Chr02	irgsp1_rep	CDS	1332857	1333193	.	+	1	Parent=Os02t0125400-01
Chr02	irgsp1_rep	three_prime_UTR	1333194	1333420	.	+	.	Parent=Os02t0125400-01
Chr02	irgsp1_rep	mRNA	1334563	1337685	.	+	.	ID=Os02t0125500-00;Name=Os02t0125500-00;Locus_id=Os02g0125500;Note=K Homology domain containing protein.;Transcript_evidence=AK375184 (DDBJ);ORF_evidence=B9F281 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=K Homology (IPR004087),K Homology%2C type 1 (IPR004088),K Homology%2C type 1%2C subgroup (IPR018111);TENOR=Os02t0125500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	1334563	1334994	.	+	0	Parent=Os02t0125500-00
Chr02	irgsp1_rep	CDS	1336096	1336351	.	+	0	Parent=Os02t0125500-00
Chr02	irgsp1_rep	CDS	1336733	1336881	.	+	2	Parent=Os02t0125500-00
Chr02	irgsp1_rep	CDS	1336969	1337190	.	+	0	Parent=Os02t0125500-00
Chr02	irgsp1_rep	CDS	1337425	1337685	.	+	0	Parent=Os02t0125500-00
Chr02	irgsp1_rep	mRNA	1336096	1337620	.	-	.	ID=Os02t0125533-00;Name=Os02t0125533-00;Locus_id=Os02g0125533;Note=Non-protein coding transcript.;Transcript_evidence=BT018439 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0125533-00
Chr02	irgsp1_rep	exon	1337363	1337620	.	-	.	Parent=Os02t0125533-00
Chr02	irgsp1_rep	exon	1336991	1337131	.	-	.	Parent=Os02t0125533-00
Chr02	irgsp1_rep	exon	1336715	1336933	.	-	.	Parent=Os02t0125533-00
Chr02	irgsp1_rep	exon	1336096	1336330	.	-	.	Parent=Os02t0125533-00
Chr02	irgsp1_rep	mRNA	1341984	1343904	.	-	.	ID=Os02t0125566-00;Name=Os02t0125566-00;Locus_id=Os02g0125566;Note=Hypothetical protein.;Transcript_evidence=tplb0038i24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0125566-00
Chr02	irgsp1_rep	five_prime_UTR	1343688	1343904	.	-	.	Parent=Os02t0125566-00
Chr02	irgsp1_rep	five_prime_UTR	1343481	1343581	.	-	.	Parent=Os02t0125566-00
Chr02	irgsp1_rep	CDS	1343217	1343480	.	-	0	Parent=Os02t0125566-00
Chr02	irgsp1_rep	three_prime_UTR	1343005	1343216	.	-	.	Parent=Os02t0125566-00
Chr02	irgsp1_rep	three_prime_UTR	1341984	1342399	.	-	.	Parent=Os02t0125566-00
Chr02	irgsp1_rep	mRNA	1343281	1344083	.	+	.	ID=Os02t0125600-00;Name=Os02t0125600-00;Locus_id=Os02g0125600;CGSNL Gene Symbol=NIN5;CGSNL Gene Name=NEUTRAL/ALKALINE INVERTASE 5;Oryzabase Gene Symbol Synonym(s)=OsNIN5;Oryzabase Gene Name Synonym(s)=neutral/alkaline invertase 5;Note=Plant neutral invertase family protein.;Transcript_evidence=AY575562 (DDBJ%2C Best hit);ORF_evidence=D5LY31 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Plant neutral invertase (IPR006937),Six-hairpin glycosidase-like (IPR008928);Oryzabase=14670;TENOR=Os02t0125600-00;KEGG=Os02t0125600-00
Chr02	irgsp1_rep	CDS	1343281	1343584	.	+	0	Parent=Os02t0125600-00
Chr02	irgsp1_rep	CDS	1343691	1343989	.	+	2	Parent=Os02t0125600-00
Chr02	irgsp1_rep	three_prime_UTR	1343990	1344083	.	+	.	Parent=Os02t0125600-00
Chr02	irgsp1_rep	mRNA	1344678	1347023	.	+	.	ID=Os02t0125700-01;Name=Os02t0125700-01;Locus_id=Os02g0125700;RAP-DB Gene Symbol Synonym(s)=OsLIL3%2C LIL3;RAP-DB Gene Name Synonym(s)=light-harvesting like protein 3;Oryzabase Gene Symbol Synonym(s)=OsLIL3%2C LIL3;Oryzabase Gene Name Synonym(s)=light-harvesting-like protein 3;Note=Light-harvesting like protein;Transcript_evidence=AK071006,AK101502;ORF_evidence=B7EIQ8;NIAS_FLcDNA=J023078I12,J033044E02;Manual Curation=November 1%2C 2019;Literature_PMID=31664904;Oryzabase=21877;TENOR=Os02t0125700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=chloroplast (GO:0009507)
Chr02	irgsp1_rep	five_prime_UTR	1344678	1344748	.	+	.	Parent=Os02t0125700-01
Chr02	irgsp1_rep	CDS	1344749	1345115	.	+	0	Parent=Os02t0125700-01
Chr02	irgsp1_rep	CDS	1346229	1346366	.	+	2	Parent=Os02t0125700-01
Chr02	irgsp1_rep	CDS	1346505	1346752	.	+	2	Parent=Os02t0125700-01
Chr02	irgsp1_rep	three_prime_UTR	1346753	1347023	.	+	.	Parent=Os02t0125700-01
Chr02	irgsp1_rep	mRNA	1347163	1351333	.	-	.	ID=Os02t0125800-01;Name=Os02t0125800-01;Locus_id=Os02g0125800;Oryzabase Gene Symbol Synonym(s)=DLN40%2C OsDLN40;Oryzabase Gene Name Synonym(s)=TFIIH p34 subunit%2C DLN repressor 40%2C DLN motif protein 40;Note=Transcription factor Tfb4 family protein.;Transcript_evidence=AK121932 (DDBJ%2C Best hit);ORF_evidence=NP_564050.1 (RefSeq);GO=Biological Process: DNA repair (GO:0006281),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: core TFIIH complex (GO:0000439);InterPro=Transcription factor Tfb4 (IPR004600);NIAS_FLcDNA=J033106M17;Oryzabase=21065;Expression=AK121932;TENOR=Os02t0125800-01;KEGG=Os02t0125800-01
Chr02	irgsp1_rep	five_prime_UTR	1351188	1351333	.	-	.	Parent=Os02t0125800-01
Chr02	irgsp1_rep	CDS	1351163	1351187	.	-	0	Parent=Os02t0125800-01
Chr02	irgsp1_rep	CDS	1350978	1351066	.	-	2	Parent=Os02t0125800-01
Chr02	irgsp1_rep	CDS	1350424	1350694	.	-	0	Parent=Os02t0125800-01
Chr02	irgsp1_rep	CDS	1350295	1350341	.	-	2	Parent=Os02t0125800-01
Chr02	irgsp1_rep	CDS	1349987	1350024	.	-	0	Parent=Os02t0125800-01
Chr02	irgsp1_rep	CDS	1349865	1349910	.	-	1	Parent=Os02t0125800-01
Chr02	irgsp1_rep	CDS	1349576	1349629	.	-	0	Parent=Os02t0125800-01
Chr02	irgsp1_rep	CDS	1349385	1349453	.	-	0	Parent=Os02t0125800-01
Chr02	irgsp1_rep	CDS	1348447	1348523	.	-	0	Parent=Os02t0125800-01
Chr02	irgsp1_rep	CDS	1348040	1348135	.	-	1	Parent=Os02t0125800-01
Chr02	irgsp1_rep	CDS	1347868	1347925	.	-	1	Parent=Os02t0125800-01
Chr02	irgsp1_rep	three_prime_UTR	1347811	1347867	.	-	.	Parent=Os02t0125800-01
Chr02	irgsp1_rep	three_prime_UTR	1347163	1347460	.	-	.	Parent=Os02t0125800-01
Chr02	irgsp1_rep	mRNA	1366177	1369122	.	+	.	ID=Os02t0126000-01;Name=Os02t0126000-01;Locus_id=Os02g0126000;Note=Conserved hypothetical protein.;Transcript_evidence=AK107514 (DDBJ%2C Best hit);ORF_evidence=B8AGZ3 (UniProt);NIAS_FLcDNA=002-129-F02;Expression=AK107514;TENOR=Os02t0126000-01;KEGG=Os02t0126000-01
Chr02	irgsp1_rep	five_prime_UTR	1366177	1366272	.	+	.	Parent=Os02t0126000-01
Chr02	irgsp1_rep	five_prime_UTR	1366366	1368576	.	+	.	Parent=Os02t0126000-01
Chr02	irgsp1_rep	CDS	1368577	1368743	.	+	0	Parent=Os02t0126000-01
Chr02	irgsp1_rep	CDS	1368824	1368956	.	+	1	Parent=Os02t0126000-01
Chr02	irgsp1_rep	three_prime_UTR	1368957	1369122	.	+	.	Parent=Os02t0126000-01
Chr02	irgsp1_rep	mRNA	1375685	1377691	.	+	.	ID=Os02t0126200-00;Name=Os02t0126200-00;Locus_id=Os02g0126200;Note=Hypothetical conserved gene.;Transcript_evidence=CT835354 (DDBJ%2C Best hit);ORF_evidence=Q6Z2N1 (UniProt);TENOR=Os02t0126200-00;KEGG=Os02t0126200-00
Chr02	irgsp1_rep	five_prime_UTR	1375685	1375704	.	+	.	Parent=Os02t0126200-00
Chr02	irgsp1_rep	CDS	1375705	1375869	.	+	0	Parent=Os02t0126200-00
Chr02	irgsp1_rep	CDS	1376151	1376278	.	+	0	Parent=Os02t0126200-00
Chr02	irgsp1_rep	CDS	1377416	1377602	.	+	1	Parent=Os02t0126200-00
Chr02	irgsp1_rep	three_prime_UTR	1377603	1377691	.	+	.	Parent=Os02t0126200-00
Chr02	irgsp1_rep	mRNA	1379250	1382389	.	-	.	ID=Os02t0126300-01;Name=Os02t0126300-01;Locus_id=Os02g0126300;Note=MAP65/ASE1 family protein.;Transcript_evidence=AK070676 (DDBJ%2C Best hit);ORF_evidence=A2X0D9 (UniProt);InterPro=Microtubule-associated protein%2C MAP65/ASE1-type (IPR007145);NIAS_FLcDNA=J023063N13;Expression=AK070676;TENOR=Os02t0126300-01;KEGG=Os02t0126300-01
Chr02	irgsp1_rep	five_prime_UTR	1382178	1382389	.	-	.	Parent=Os02t0126300-01
Chr02	irgsp1_rep	CDS	1382097	1382177	.	-	0	Parent=Os02t0126300-01
Chr02	irgsp1_rep	CDS	1381785	1382009	.	-	0	Parent=Os02t0126300-01
Chr02	irgsp1_rep	CDS	1381481	1381714	.	-	0	Parent=Os02t0126300-01
Chr02	irgsp1_rep	CDS	1381177	1381365	.	-	0	Parent=Os02t0126300-01
Chr02	irgsp1_rep	CDS	1380933	1381088	.	-	0	Parent=Os02t0126300-01
Chr02	irgsp1_rep	CDS	1380688	1380847	.	-	0	Parent=Os02t0126300-01
Chr02	irgsp1_rep	CDS	1380327	1380475	.	-	2	Parent=Os02t0126300-01
Chr02	irgsp1_rep	CDS	1380150	1380237	.	-	0	Parent=Os02t0126300-01
Chr02	irgsp1_rep	CDS	1379983	1380056	.	-	2	Parent=Os02t0126300-01
Chr02	irgsp1_rep	CDS	1379827	1379901	.	-	0	Parent=Os02t0126300-01
Chr02	irgsp1_rep	CDS	1379448	1379696	.	-	0	Parent=Os02t0126300-01
Chr02	irgsp1_rep	three_prime_UTR	1379250	1379447	.	-	.	Parent=Os02t0126300-01
Chr02	irgsp1_rep	mRNA	1387873	1394276	.	+	.	ID=Os02t0126400-01;Name=Os02t0126400-01;Locus_id=Os02g0126400;RAP-DB Gene Symbol Synonym(s)=CDPK4%2C OsCDPK4%2C OsCPK4%2C CDPK1;RAP-DB Gene Name Synonym(s)=CALCIUM-DEPENDENT PROTEIN KINASE 4%2C calcium-dependent protein kinase 4;CGSNL Gene Symbol=CDPK4;CGSNL Gene Name=CALCIUM-DEPENDENT PROTEIN KINASE 4;Oryzabase Gene Symbol Synonym(s)=OsCDPK4%2C OsCPK4%2C CPK4%2C CDPK1;Oryzabase Gene Name Synonym(s)=calcium-dependent protein kinase 4%2C Ca2 +-dependent protein kinase 4;Note=Calcium-dependent protein kinase%2C Positive regulator of the salt and drought stress responses;Transcript_evidence=AK060738;ORF_evidence=Q6Z2M9;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine/threonine/dual specificity protein kinase%2C catalytic  domain (IPR002290),EF-hand domain pair (IPR011992),EF-hand domain (IPR002048),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271),EF-Hand 1%2C calcium-binding site (IPR018247);NIAS_FLcDNA=001-032-C08;Manual Curation=June 5%2C 2014;Literature_PMID=24784760,15695435;Oryzabase=8058;TENOR=Os02t0126400-01;KEGG=Os02t0126400-01 (EC:2.7.11.17)
Chr02	irgsp1_rep	five_prime_UTR	1387873	1388048	.	+	.	Parent=Os02t0126400-01
Chr02	irgsp1_rep	CDS	1388049	1388330	.	+	0	Parent=Os02t0126400-01
Chr02	irgsp1_rep	CDS	1390352	1390482	.	+	0	Parent=Os02t0126400-01
Chr02	irgsp1_rep	CDS	1390840	1390881	.	+	1	Parent=Os02t0126400-01
Chr02	irgsp1_rep	CDS	1391027	1391138	.	+	1	Parent=Os02t0126400-01
Chr02	irgsp1_rep	CDS	1391241	1391319	.	+	0	Parent=Os02t0126400-01
Chr02	irgsp1_rep	CDS	1391441	1391610	.	+	2	Parent=Os02t0126400-01
Chr02	irgsp1_rep	CDS	1392503	1392629	.	+	0	Parent=Os02t0126400-01
Chr02	irgsp1_rep	CDS	1392731	1392846	.	+	2	Parent=Os02t0126400-01
Chr02	irgsp1_rep	CDS	1392926	1393033	.	+	0	Parent=Os02t0126400-01
Chr02	irgsp1_rep	CDS	1393118	1393180	.	+	0	Parent=Os02t0126400-01
Chr02	irgsp1_rep	CDS	1393283	1393456	.	+	0	Parent=Os02t0126400-01
Chr02	irgsp1_rep	CDS	1393814	1393978	.	+	0	Parent=Os02t0126400-01
Chr02	irgsp1_rep	three_prime_UTR	1393979	1394276	.	+	.	Parent=Os02t0126400-01
Chr02	irgsp1_rep	mRNA	1387885	1394273	.	+	.	ID=Os02t0126400-02;Name=Os02t0126400-02;Locus_id=Os02g0126400;CGSNL Gene Symbol=CDPK4;CGSNL Gene Name=CALCIUM-DEPENDENT PROTEIN KINASE 4;Oryzabase Gene Symbol Synonym(s)=OsCDPK4%2C OsCPK4%2C CPK4%2C CDPK1;Oryzabase Gene Name Synonym(s)=calcium-dependent protein kinase 4%2C Ca2 +-dependent protein kinase 4;Note=Similar to Calcium-dependent protein kinase.;Transcript_evidence=AK067146 (DDBJ%2C Best hit);ORF_evidence=Q9SE25 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Calcium-binding EF-hand (IPR002048),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),EF-hand-like domain (IPR011992),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J013095I17;Oryzabase=8058;TENOR=Os02t0126400-02;KEGG=Os02t0126400-02 (EC:2.7.11.17)
Chr02	irgsp1_rep	five_prime_UTR	1387885	1388048	.	+	.	Parent=Os02t0126400-02
Chr02	irgsp1_rep	CDS	1388049	1388330	.	+	0	Parent=Os02t0126400-02
Chr02	irgsp1_rep	CDS	1390352	1390482	.	+	0	Parent=Os02t0126400-02
Chr02	irgsp1_rep	CDS	1390840	1390881	.	+	1	Parent=Os02t0126400-02
Chr02	irgsp1_rep	CDS	1391027	1391138	.	+	1	Parent=Os02t0126400-02
Chr02	irgsp1_rep	CDS	1391241	1391319	.	+	0	Parent=Os02t0126400-02
Chr02	irgsp1_rep	CDS	1391441	1391610	.	+	2	Parent=Os02t0126400-02
Chr02	irgsp1_rep	CDS	1392503	1392629	.	+	0	Parent=Os02t0126400-02
Chr02	irgsp1_rep	CDS	1392731	1392846	.	+	2	Parent=Os02t0126400-02
Chr02	irgsp1_rep	CDS	1392926	1393033	.	+	0	Parent=Os02t0126400-02
Chr02	irgsp1_rep	CDS	1393118	1393180	.	+	0	Parent=Os02t0126400-02
Chr02	irgsp1_rep	CDS	1393283	1393456	.	+	0	Parent=Os02t0126400-02
Chr02	irgsp1_rep	CDS	1393820	1393978	.	+	0	Parent=Os02t0126400-02
Chr02	irgsp1_rep	three_prime_UTR	1393979	1394273	.	+	.	Parent=Os02t0126400-02
Chr02	irgsp1_rep	mRNA	1394865	1397141	.	+	.	ID=Os02t0126500-01;Name=Os02t0126500-01;Locus_id=Os02g0126500;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK103476 (DDBJ%2C Best hit);ORF_evidence=A2X0E1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033130D21;Expression=AK103476;TENOR=Os02t0126500-01;KEGG=Os02t0126500-01
Chr02	irgsp1_rep	five_prime_UTR	1394865	1394900	.	+	.	Parent=Os02t0126500-01
Chr02	irgsp1_rep	CDS	1394901	1396184	.	+	0	Parent=Os02t0126500-01
Chr02	irgsp1_rep	three_prime_UTR	1396185	1397141	.	+	.	Parent=Os02t0126500-01
Chr02	irgsp1_rep	mRNA	1397698	1398983	.	+	.	ID=Os02t0126600-01;Name=Os02t0126600-01;Locus_id=Os02g0126600;Note=Conserved hypothetical protein.;Transcript_evidence=AK063220 (DDBJ%2C Best hit);ORF_evidence=A2X0E2 (UniProt);NIAS_FLcDNA=001-112-E04;Expression=AK063220;TENOR=Os02t0126600-01;KEGG=Os02t0126600-01
Chr02	irgsp1_rep	five_prime_UTR	1397698	1397728	.	+	.	Parent=Os02t0126600-01
Chr02	irgsp1_rep	CDS	1397729	1397753	.	+	0	Parent=Os02t0126600-01
Chr02	irgsp1_rep	CDS	1397970	1398081	.	+	2	Parent=Os02t0126600-01
Chr02	irgsp1_rep	CDS	1398171	1398231	.	+	1	Parent=Os02t0126600-01
Chr02	irgsp1_rep	CDS	1398495	1398788	.	+	0	Parent=Os02t0126600-01
Chr02	irgsp1_rep	three_prime_UTR	1398789	1398983	.	+	.	Parent=Os02t0126600-01
Chr02	irgsp1_rep	mRNA	1399287	1401334	.	-	.	ID=Os02t0126700-01;Name=Os02t0126700-01;Locus_id=Os02g0126700;Oryzabase Gene Name Synonym(s)=Sm gene%2C Sm family protein%2C Small nuclear ribonucleoprotein E;Note=Similar to Small nuclear ribonucleoprotein homolog.;Transcript_evidence=AK063621 (DDBJ%2C Best hit);ORF_evidence=D6BQM6 (UniProt);InterPro=Like-Sm ribonucleoprotein (LSM) domain (IPR001163),Like-Sm ribonucleoprotein (LSM) domain%2C eukaryotic/archaea-type (IPR006649),Like-Sm ribonucleoprotein (LSM)-related domain (IPR010920);NIAS_FLcDNA=001-118-E07;Oryzabase=15639;Expression=AK063621;TENOR=Os02t0126700-01;KEGG=Os02t0126700-01
Chr02	irgsp1_rep	five_prime_UTR	1401223	1401334	.	-	.	Parent=Os02t0126700-01
Chr02	irgsp1_rep	CDS	1401154	1401222	.	-	0	Parent=Os02t0126700-01
Chr02	irgsp1_rep	CDS	1400988	1401050	.	-	0	Parent=Os02t0126700-01
Chr02	irgsp1_rep	CDS	1399849	1399927	.	-	0	Parent=Os02t0126700-01
Chr02	irgsp1_rep	CDS	1399719	1399764	.	-	2	Parent=Os02t0126700-01
Chr02	irgsp1_rep	CDS	1399613	1399622	.	-	1	Parent=Os02t0126700-01
Chr02	irgsp1_rep	three_prime_UTR	1399287	1399612	.	-	.	Parent=Os02t0126700-01
Chr02	irgsp1_rep	mRNA	1402582	1404520	.	+	.	ID=Os02t0126800-01;Name=Os02t0126800-01;Locus_id=Os02g0126800;Note=Similar to Golgi SNARE 12 protein (AtGOS12) (Golgi SNAP receptor complex member 1-2).;Transcript_evidence=AK071820 (DDBJ%2C Best hit);ORF_evidence=B6TXF5 (UniProt);GO=Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888),Cellular Component: Golgi membrane (GO:0000139),Cellular Component: cis-Golgi network (GO:0005801),Cellular Component: integral to membrane (GO:0016021);InterPro=Golgi SNAP receptor complex%2C subunit 1 (IPR023601);NIAS_FLcDNA=J023114B18;Expression=AK071820;TENOR=Os02t0126800-01;KEGG=Os02t0126800-01
Chr02	irgsp1_rep	five_prime_UTR	1402582	1402679	.	+	.	Parent=Os02t0126800-01
Chr02	irgsp1_rep	CDS	1402680	1403033	.	+	0	Parent=Os02t0126800-01
Chr02	irgsp1_rep	CDS	1403126	1403215	.	+	0	Parent=Os02t0126800-01
Chr02	irgsp1_rep	CDS	1403330	1403401	.	+	0	Parent=Os02t0126800-01
Chr02	irgsp1_rep	CDS	1403851	1403980	.	+	0	Parent=Os02t0126800-01
Chr02	irgsp1_rep	CDS	1404172	1404269	.	+	2	Parent=Os02t0126800-01
Chr02	irgsp1_rep	three_prime_UTR	1404270	1404520	.	+	.	Parent=Os02t0126800-01
Chr02	irgsp1_rep	mRNA	1402649	1405694	.	-	.	ID=Os02t0126900-01;Name=Os02t0126900-01;Locus_id=Os02g0126900;Note=Non-protein coding transcript.;Transcript_evidence=AK288374 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090026G04;TENOR=Os02t0126900-01
Chr02	irgsp1_rep	exon	1402649	1405694	.	-	.	Parent=Os02t0126900-01
Chr02	irgsp1_rep	mRNA	1412219	1415912	.	+	.	ID=Os02t0127000-01;Name=Os02t0127000-01;Locus_id=Os02g0127000;Note=Similar to binding.;Transcript_evidence=AK105450 (DDBJ%2C Best hit);ORF_evidence=NP_850995.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026);NIAS_FLcDNA=001-125-C01;TENOR=Os02t0127000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	1412219	1412219	.	+	.	Parent=Os02t0127000-01
Chr02	irgsp1_rep	CDS	1412220	1412418	.	+	0	Parent=Os02t0127000-01
Chr02	irgsp1_rep	CDS	1412789	1412853	.	+	2	Parent=Os02t0127000-01
Chr02	irgsp1_rep	CDS	1413015	1413063	.	+	0	Parent=Os02t0127000-01
Chr02	irgsp1_rep	CDS	1413775	1413869	.	+	2	Parent=Os02t0127000-01
Chr02	irgsp1_rep	CDS	1414024	1414109	.	+	0	Parent=Os02t0127000-01
Chr02	irgsp1_rep	CDS	1414185	1414244	.	+	1	Parent=Os02t0127000-01
Chr02	irgsp1_rep	CDS	1414322	1414403	.	+	1	Parent=Os02t0127000-01
Chr02	irgsp1_rep	CDS	1415228	1415341	.	+	0	Parent=Os02t0127000-01
Chr02	irgsp1_rep	CDS	1415444	1415608	.	+	0	Parent=Os02t0127000-01
Chr02	irgsp1_rep	three_prime_UTR	1415609	1415912	.	+	.	Parent=Os02t0127000-01
Chr02	irgsp1_rep	mRNA	1412368	1415834	.	+	.	ID=Os02t0127000-02;Name=Os02t0127000-02;Locus_id=Os02g0127000;Note=Similar to binding.;Transcript_evidence=AK102416 (DDBJ%2C Best hit);ORF_evidence=NP_566239.2 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026);NIAS_FLcDNA=J033093C05;TENOR=Os02t0127000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	1412368	1412418	.	+	.	Parent=Os02t0127000-02
Chr02	irgsp1_rep	five_prime_UTR	1412789	1412853	.	+	.	Parent=Os02t0127000-02
Chr02	irgsp1_rep	five_prime_UTR	1413015	1413698	.	+	.	Parent=Os02t0127000-02
Chr02	irgsp1_rep	CDS	1413699	1413869	.	+	0	Parent=Os02t0127000-02
Chr02	irgsp1_rep	CDS	1414024	1414109	.	+	0	Parent=Os02t0127000-02
Chr02	irgsp1_rep	CDS	1414185	1414244	.	+	1	Parent=Os02t0127000-02
Chr02	irgsp1_rep	CDS	1414322	1414460	.	+	1	Parent=Os02t0127000-02
Chr02	irgsp1_rep	three_prime_UTR	1414461	1415341	.	+	.	Parent=Os02t0127000-02
Chr02	irgsp1_rep	three_prime_UTR	1415444	1415834	.	+	.	Parent=Os02t0127000-02
Chr02	irgsp1_rep	mRNA	1416721	1417440	.	+	.	ID=Os02t0127100-00;Name=Os02t0127100-00;Locus_id=Os02g0127100;CGSNL Gene Symbol=THI24;CGSNL Gene Name=THIONIN 24;Oryzabase Gene Symbol Synonym(s)=OsTHI24%2C OsTHION24%2C THION24;Oryzabase Gene Name Synonym(s)=Thionin 24;Note=Cell division protein FtsZ family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001045758.1 (RefSeq);Oryzabase=23353;TENOR=Os02t0127100-00;KEGG=Os02t0127100-00
Chr02	irgsp1_rep	CDS	1416721	1417440	.	+	0	Parent=Os02t0127100-00
Chr02	irgsp1_rep	mRNA	1423979	1424390	.	+	.	ID=Os02t0127300-01;Name=Os02t0127300-01;Locus_id=Os02g0127300;Note=Hypothetical protein.;Transcript_evidence=AK107837 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-133-H06;TENOR=Os02t0127300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	1423979	1424233	.	+	0	Parent=Os02t0127300-01
Chr02	irgsp1_rep	three_prime_UTR	1424234	1424390	.	+	.	Parent=Os02t0127300-01
Chr02	irgsp1_rep	mRNA	1427398	1428069	.	+	.	ID=Os02t0127400-01;Name=Os02t0127400-01;Locus_id=Os02g0127400;Note=Hypothetical protein.;Transcript_evidence=AK109576 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-133-G04;Expression=AK109576;TENOR=Os02t0127400-01;KEGG=Os02t0127400-01
Chr02	irgsp1_rep	five_prime_UTR	1427398	1427489	.	+	.	Parent=Os02t0127400-01
Chr02	irgsp1_rep	CDS	1427490	1427789	.	+	0	Parent=Os02t0127400-01
Chr02	irgsp1_rep	three_prime_UTR	1427790	1428069	.	+	.	Parent=Os02t0127400-01
Chr02	irgsp1_rep	mRNA	1430330	1430839	.	+	.	ID=Os02t0127500-01;Name=Os02t0127500-01;Locus_id=Os02g0127500;CGSNL Gene Symbol=THI25;CGSNL Gene Name=THIONIN 25;Oryzabase Gene Symbol Synonym(s)=OsTHI25%2C OsTHION25%2C THION25;Oryzabase Gene Name Synonym(s)=Thionin 25;Note=Similar to Tpc70 protein.;Transcript_evidence=AK120793 (DDBJ%2C Best hit);ORF_evidence=Q41615 (UniProt);NIAS_FLcDNA=J023012A05;Oryzabase=23354;Expression=AK120793;TENOR=Os02t0127500-01;KEGG=Os02t0127500-01
Chr02	irgsp1_rep	five_prime_UTR	1430330	1430381	.	+	.	Parent=Os02t0127500-01
Chr02	irgsp1_rep	CDS	1430382	1430603	.	+	0	Parent=Os02t0127500-01
Chr02	irgsp1_rep	three_prime_UTR	1430604	1430839	.	+	.	Parent=Os02t0127500-01
Chr02	irgsp1_rep	mRNA	1433094	1436127	.	+	.	ID=Os02t0127600-00;Name=Os02t0127600-00;Locus_id=Os02g0127600;Oryzabase Gene Symbol Synonym(s)=PPR;Oryzabase Gene Name Synonym(s)=Pentatricopeptide repeat (PPR) protein;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=tplb0012i20 (Wheat FLcDNA);ORF_evidence=Q6Z2L7 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);Oryzabase=22517;TENOR=Os02t0127600-00;KEGG=Os02t0127600-00
Chr02	irgsp1_rep	CDS	1433094	1436021	.	+	0	Parent=Os02t0127600-00
Chr02	irgsp1_rep	three_prime_UTR	1436022	1436127	.	+	.	Parent=Os02t0127600-00
Chr02	irgsp1_rep	mRNA	1437441	1441181	.	-	.	ID=Os02t0127700-01;Name=Os02t0127700-01;Locus_id=Os02g0127700;Note=Similar to Ribose-phosphate pyrophosphokinase.;Transcript_evidence=AK072096 (DDBJ%2C Best hit);ORF_evidence=B4FQE0 (UniProt);GO=Biological Process: nucleotide biosynthetic process (GO:0009165),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: ribose phosphate diphosphokinase activity (GO:0004749);InterPro=Ribose-phosphate diphosphokinase (IPR005946);NIAS_FLcDNA=J013115O20;Expression=AK072096;TENOR=Os02t0127700-01;KEGG=Os02t0127700-01 (EC:2.7.6.1)
Chr02	irgsp1_rep	five_prime_UTR	1441113	1441181	.	-	.	Parent=Os02t0127700-01
Chr02	irgsp1_rep	CDS	1441008	1441112	.	-	0	Parent=Os02t0127700-01
Chr02	irgsp1_rep	CDS	1440386	1440559	.	-	0	Parent=Os02t0127700-01
Chr02	irgsp1_rep	CDS	1439771	1440019	.	-	0	Parent=Os02t0127700-01
Chr02	irgsp1_rep	CDS	1439370	1439407	.	-	0	Parent=Os02t0127700-01
Chr02	irgsp1_rep	CDS	1439264	1439277	.	-	1	Parent=Os02t0127700-01
Chr02	irgsp1_rep	CDS	1439155	1439168	.	-	2	Parent=Os02t0127700-01
Chr02	irgsp1_rep	three_prime_UTR	1439000	1439154	.	-	.	Parent=Os02t0127700-01
Chr02	irgsp1_rep	three_prime_UTR	1438627	1438695	.	-	.	Parent=Os02t0127700-01
Chr02	irgsp1_rep	three_prime_UTR	1438385	1438466	.	-	.	Parent=Os02t0127700-01
Chr02	irgsp1_rep	three_prime_UTR	1437932	1438091	.	-	.	Parent=Os02t0127700-01
Chr02	irgsp1_rep	three_prime_UTR	1437441	1437723	.	-	.	Parent=Os02t0127700-01
Chr02	irgsp1_rep	mRNA	1437441	1441125	.	-	.	ID=Os02t0127700-02;Name=Os02t0127700-02;Locus_id=Os02g0127700;Note=Ribose-phosphate pyrophosphokinase 1 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 1).;Transcript_evidence=AK060422 (DDBJ%2C Best hit),AK099092 (DDBJ%2C Best hit);ORF_evidence=B4FQE0 (UniProt);GO=Biological Process: nucleoside metabolic process (GO:0009116),Biological Process: ribonucleoside monophosphate biosynthetic process (GO:0009156),Biological Process: nucleotide biosynthetic process (GO:0009165),Biological Process: cellular biosynthetic process (GO:0044249),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: ribose phosphate diphosphokinase activity (GO:0004749);InterPro=Phosphoribosyltransferase (IPR000836),Phosphoribosyl pyrophosphate synthetase%2C conserved site (IPR000842),Ribose-phosphate diphosphokinase (IPR005946);NIAS_FLcDNA=001-010-G07,J023015H14;Expression=AK060422;TENOR=Os02t0127700-02;KEGG=Os02t0127700-02 (EC:2.7.6.1)
Chr02	irgsp1_rep	five_prime_UTR	1441113	1441125	.	-	.	Parent=Os02t0127700-02
Chr02	irgsp1_rep	CDS	1441008	1441112	.	-	0	Parent=Os02t0127700-02
Chr02	irgsp1_rep	CDS	1440386	1440559	.	-	0	Parent=Os02t0127700-02
Chr02	irgsp1_rep	CDS	1439771	1440019	.	-	0	Parent=Os02t0127700-02
Chr02	irgsp1_rep	CDS	1439264	1439407	.	-	0	Parent=Os02t0127700-02
Chr02	irgsp1_rep	CDS	1439000	1439168	.	-	0	Parent=Os02t0127700-02
Chr02	irgsp1_rep	CDS	1438627	1438695	.	-	2	Parent=Os02t0127700-02
Chr02	irgsp1_rep	CDS	1438385	1438466	.	-	2	Parent=Os02t0127700-02
Chr02	irgsp1_rep	CDS	1437932	1438091	.	-	1	Parent=Os02t0127700-02
Chr02	irgsp1_rep	CDS	1437685	1437723	.	-	0	Parent=Os02t0127700-02
Chr02	irgsp1_rep	three_prime_UTR	1437441	1437684	.	-	.	Parent=Os02t0127700-02
Chr02	irgsp1_rep	mRNA	1443911	1446402	.	+	.	ID=Os02t0127800-01;Name=Os02t0127800-01;Locus_id=Os02g0127800;CGSNL Gene Symbol=XTH26;CGSNL Gene Name=XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 26;Oryzabase Gene Symbol Synonym(s)=OsXTH26;Oryzabase Gene Name Synonym(s)=xyloglucan endotransglucosylase/hydrolase%2C xyloglucan endotransglucosylase 26;Note=Concanavalin A-like lectin/glucanase domain containing protein.;Transcript_evidence=AK073018 (DDBJ%2C Best hit);ORF_evidence=C0IRH3 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: cellular glucan metabolic process (GO:0006073),Cellular Component: cell wall (GO:0005618),Cellular Component: apoplast (GO:0048046),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762);InterPro=Glycoside hydrolase%2C family 16 (IPR000757),Concanavalin A-like lectin/glucanase (IPR008985),Xyloglucan endo-transglycosylase%2C C-terminal (IPR010713),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Xyloglucan endotransglucosylase/hydrolase (IPR016455);NIAS_FLcDNA=J023149H23;Oryzabase=6507;Expression=AK073018;TENOR=Os02t0127800-01;KEGG=Os02t0127800-01 (EC:2.4.1.207)
Chr02	irgsp1_rep	five_prime_UTR	1443911	1444218	.	+	.	Parent=Os02t0127800-01
Chr02	irgsp1_rep	CDS	1444219	1444414	.	+	0	Parent=Os02t0127800-01
Chr02	irgsp1_rep	CDS	1444535	1444635	.	+	2	Parent=Os02t0127800-01
Chr02	irgsp1_rep	CDS	1445449	1446174	.	+	0	Parent=Os02t0127800-01
Chr02	irgsp1_rep	three_prime_UTR	1446175	1446402	.	+	.	Parent=Os02t0127800-01
Chr02	irgsp1_rep	mRNA	1447139	1449583	.	+	.	ID=Os02t0127900-01;Name=Os02t0127900-01;Locus_id=Os02g0127900;Note=Conserved hypothetical protein.;Transcript_evidence=AK102783 (DDBJ%2C Best hit);ORF_evidence=A2X0F5 (UniProt);NIAS_FLcDNA=J033107K13;TENOR=Os02t0127900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	1447139	1448648	.	+	.	Parent=Os02t0127900-01
Chr02	irgsp1_rep	CDS	1448649	1449140	.	+	0	Parent=Os02t0127900-01
Chr02	irgsp1_rep	three_prime_UTR	1449141	1449583	.	+	.	Parent=Os02t0127900-01
Chr02	irgsp1_rep	mRNA	1450233	1450766	.	+	.	ID=Os02t0128000-00;Name=Os02t0128000-00;Locus_id=Os02g0128000;Note=Similar to Cytosolic class I small heat shock protein 6 (Fragment).;Transcript_evidence=Q0E4A8 (UniProt);ORF_evidence=Q0E4A8 (UniProt);InterPro=Heat shock protein Hsp20 (IPR002068),HSP20-like chaperone (IPR008978);TENOR=Os02t0128000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	1450233	1450766	.	+	0	Parent=Os02t0128000-00
Chr02	irgsp1_rep	mRNA	1453367	1456346	.	+	.	ID=Os02t0128100-00;Name=Os02t0128100-00;Locus_id=Os02g0128100;Note=Hypothetical conserved gene.;Transcript_evidence=CT835338 (DDBJ%2C Best hit);ORF_evidence=B9F290 (UniProt);TENOR=Os02t0128100-00;KEGG=Os02t0128100-00
Chr02	irgsp1_rep	five_prime_UTR	1453367	1453477	.	+	.	Parent=Os02t0128100-00
Chr02	irgsp1_rep	CDS	1453478	1453750	.	+	0	Parent=Os02t0128100-00
Chr02	irgsp1_rep	CDS	1455788	1456024	.	+	0	Parent=Os02t0128100-00
Chr02	irgsp1_rep	three_prime_UTR	1456025	1456346	.	+	.	Parent=Os02t0128100-00
Chr02	irgsp1_rep	mRNA	1457228	1461428	.	+	.	ID=Os02t0128200-01;Name=Os02t0128200-01;Locus_id=Os02g0128200;CGSNL Gene Symbol=BZIP13;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 13;Oryzabase Gene Symbol Synonym(s)=OsbZIP13;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 13;Note=Similar to Transcription factor HBP-1a (Histone-specific transcription factor HBP1).;Transcript_evidence=AK111901 (DDBJ%2C Best hit);ORF_evidence=P23922 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616),G-box binding%2C MFMR (IPR012900);NIAS_FLcDNA=J023076M20;Oryzabase=10102;Expression=AK111901;TENOR=Os02t0128200-01;KEGG=Os02t0128200-01
Chr02	irgsp1_rep	five_prime_UTR	1457228	1457494	.	+	.	Parent=Os02t0128200-01
Chr02	irgsp1_rep	five_prime_UTR	1457825	1457917	.	+	.	Parent=Os02t0128200-01
Chr02	irgsp1_rep	CDS	1457918	1457971	.	+	0	Parent=Os02t0128200-01
Chr02	irgsp1_rep	CDS	1458417	1458482	.	+	0	Parent=Os02t0128200-01
Chr02	irgsp1_rep	CDS	1458593	1458679	.	+	0	Parent=Os02t0128200-01
Chr02	irgsp1_rep	CDS	1459159	1459239	.	+	0	Parent=Os02t0128200-01
Chr02	irgsp1_rep	CDS	1459338	1459394	.	+	0	Parent=Os02t0128200-01
Chr02	irgsp1_rep	CDS	1459470	1459500	.	+	0	Parent=Os02t0128200-01
Chr02	irgsp1_rep	CDS	1459577	1459634	.	+	2	Parent=Os02t0128200-01
Chr02	irgsp1_rep	CDS	1459710	1459761	.	+	1	Parent=Os02t0128200-01
Chr02	irgsp1_rep	CDS	1459881	1459917	.	+	0	Parent=Os02t0128200-01
Chr02	irgsp1_rep	CDS	1460008	1460210	.	+	2	Parent=Os02t0128200-01
Chr02	irgsp1_rep	CDS	1460556	1460633	.	+	0	Parent=Os02t0128200-01
Chr02	irgsp1_rep	CDS	1460728	1460853	.	+	0	Parent=Os02t0128200-01
Chr02	irgsp1_rep	CDS	1461126	1461239	.	+	0	Parent=Os02t0128200-01
Chr02	irgsp1_rep	three_prime_UTR	1461240	1461428	.	+	.	Parent=Os02t0128200-01
Chr02	irgsp1_rep	mRNA	1457269	1461415	.	+	.	ID=Os02t0128200-02;Name=Os02t0128200-02;Locus_id=Os02g0128200;CGSNL Gene Symbol=BZIP13;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 13;Oryzabase Gene Symbol Synonym(s)=OsbZIP13;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 13;Note=Similar to Transcription factor HBP-1a (Histone-specific transcription factor HBP1).;Transcript_evidence=AK112009 (DDBJ%2C Best hit);ORF_evidence=P23922 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616),G-box binding%2C MFMR (IPR012900);NIAS_FLcDNA=006-209-B12;Oryzabase=10102;Expression=AK112009;TENOR=Os02t0128200-02;KEGG=Os02t0128200-02
Chr02	irgsp1_rep	five_prime_UTR	1457269	1457494	.	+	.	Parent=Os02t0128200-02
Chr02	irgsp1_rep	five_prime_UTR	1457825	1457917	.	+	.	Parent=Os02t0128200-02
Chr02	irgsp1_rep	CDS	1457918	1457971	.	+	0	Parent=Os02t0128200-02
Chr02	irgsp1_rep	CDS	1458417	1458482	.	+	0	Parent=Os02t0128200-02
Chr02	irgsp1_rep	CDS	1458593	1458679	.	+	0	Parent=Os02t0128200-02
Chr02	irgsp1_rep	CDS	1459159	1459239	.	+	0	Parent=Os02t0128200-02
Chr02	irgsp1_rep	CDS	1459338	1459394	.	+	0	Parent=Os02t0128200-02
Chr02	irgsp1_rep	CDS	1459470	1459500	.	+	0	Parent=Os02t0128200-02
Chr02	irgsp1_rep	CDS	1459577	1459634	.	+	2	Parent=Os02t0128200-02
Chr02	irgsp1_rep	CDS	1459710	1459761	.	+	1	Parent=Os02t0128200-02
Chr02	irgsp1_rep	CDS	1459881	1459917	.	+	0	Parent=Os02t0128200-02
Chr02	irgsp1_rep	CDS	1460008	1460210	.	+	2	Parent=Os02t0128200-02
Chr02	irgsp1_rep	CDS	1460556	1460633	.	+	0	Parent=Os02t0128200-02
Chr02	irgsp1_rep	CDS	1460728	1460853	.	+	0	Parent=Os02t0128200-02
Chr02	irgsp1_rep	CDS	1461126	1461239	.	+	0	Parent=Os02t0128200-02
Chr02	irgsp1_rep	three_prime_UTR	1461240	1461415	.	+	.	Parent=Os02t0128200-02
Chr02	irgsp1_rep	mRNA	1461552	1468260	.	-	.	ID=Os02t0128300-01;Name=Os02t0128300-01;Locus_id=Os02g0128300;Note=ENTH/VHS domain containing protein.;Transcript_evidence=AK101453 (DDBJ%2C Best hit);ORF_evidence=A3A2Q9 (UniProt);NIAS_FLcDNA=J033039P18;Expression=AK101453;TENOR=Os02t0128300-01;KEGG=Os02t0128300-01
Chr02	irgsp1_rep	five_prime_UTR	1468161	1468260	.	-	.	Parent=Os02t0128300-01
Chr02	irgsp1_rep	CDS	1467672	1468160	.	-	0	Parent=Os02t0128300-01
Chr02	irgsp1_rep	CDS	1467516	1467554	.	-	0	Parent=Os02t0128300-01
Chr02	irgsp1_rep	CDS	1467170	1467267	.	-	0	Parent=Os02t0128300-01
Chr02	irgsp1_rep	CDS	1466744	1466957	.	-	1	Parent=Os02t0128300-01
Chr02	irgsp1_rep	CDS	1466332	1466658	.	-	0	Parent=Os02t0128300-01
Chr02	irgsp1_rep	CDS	1465959	1466027	.	-	0	Parent=Os02t0128300-01
Chr02	irgsp1_rep	CDS	1465310	1465414	.	-	0	Parent=Os02t0128300-01
Chr02	irgsp1_rep	three_prime_UTR	1464512	1465309	.	-	.	Parent=Os02t0128300-01
Chr02	irgsp1_rep	three_prime_UTR	1464289	1464418	.	-	.	Parent=Os02t0128300-01
Chr02	irgsp1_rep	three_prime_UTR	1464100	1464207	.	-	.	Parent=Os02t0128300-01
Chr02	irgsp1_rep	three_prime_UTR	1463059	1463211	.	-	.	Parent=Os02t0128300-01
Chr02	irgsp1_rep	three_prime_UTR	1462602	1462798	.	-	.	Parent=Os02t0128300-01
Chr02	irgsp1_rep	three_prime_UTR	1461552	1462227	.	-	.	Parent=Os02t0128300-01
Chr02	irgsp1_rep	mRNA	1468981	1474672	.	-	.	ID=Os02t0128400-01;Name=Os02t0128400-01;Locus_id=Os02g0128400;Oryzabase Gene Symbol Synonym(s)=OsDjB3;Oryzabase Gene Name Synonym(s)=DnaJ domain protein B3;Note=Heat shock protein DnaJ%2C N-terminal domain containing protein.;Transcript_evidence=AK064322 (DDBJ%2C Best hit);ORF_evidence=NP_001148530.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Chaperone DnaJ%2C C-terminal (IPR002939),Heat shock protein DnaJ (IPR003095),HSP40/DnaJ peptide-binding (IPR008971),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=002-107-F02;Oryzabase=12152;Expression=AK064322;TENOR=Os02t0128400-01;KEGG=Os02t0128400-01
Chr02	irgsp1_rep	five_prime_UTR	1474429	1474672	.	-	.	Parent=Os02t0128400-01
Chr02	irgsp1_rep	five_prime_UTR	1474238	1474302	.	-	.	Parent=Os02t0128400-01
Chr02	irgsp1_rep	five_prime_UTR	1473996	1474067	.	-	.	Parent=Os02t0128400-01
Chr02	irgsp1_rep	CDS	1473830	1473995	.	-	0	Parent=Os02t0128400-01
Chr02	irgsp1_rep	CDS	1472352	1472766	.	-	2	Parent=Os02t0128400-01
Chr02	irgsp1_rep	CDS	1469295	1469733	.	-	1	Parent=Os02t0128400-01
Chr02	irgsp1_rep	three_prime_UTR	1468981	1469294	.	-	.	Parent=Os02t0128400-01
Chr02	irgsp1_rep	mRNA	1469299	1474022	.	+	.	ID=Os02t0128500-00;Name=Os02t0128500-00;Locus_id=Os02g0128500;Note=Hypothetical protein.;Transcript_evidence=tplb0026i01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0128500-00
Chr02	irgsp1_rep	five_prime_UTR	1469299	1469304	.	+	.	Parent=Os02t0128500-00
Chr02	irgsp1_rep	CDS	1469305	1469631	.	+	0	Parent=Os02t0128500-00
Chr02	irgsp1_rep	three_prime_UTR	1469632	1469715	.	+	.	Parent=Os02t0128500-00
Chr02	irgsp1_rep	three_prime_UTR	1472333	1472784	.	+	.	Parent=Os02t0128500-00
Chr02	irgsp1_rep	three_prime_UTR	1473845	1474022	.	+	.	Parent=Os02t0128500-00
Chr02	irgsp1_rep	mRNA	1476515	1479790	.	-	.	ID=Os02t0128501-00;Name=Os02t0128501-00;Locus_id=Os02g0128501;Note=Non-protein coding transcript.;Transcript_evidence=BT016330 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0128501-00
Chr02	irgsp1_rep	exon	1479567	1479790	.	-	.	Parent=Os02t0128501-00
Chr02	irgsp1_rep	exon	1478991	1479062	.	-	.	Parent=Os02t0128501-00
Chr02	irgsp1_rep	exon	1478238	1478415	.	-	.	Parent=Os02t0128501-00
Chr02	irgsp1_rep	exon	1477202	1477288	.	-	.	Parent=Os02t0128501-00
Chr02	irgsp1_rep	exon	1476515	1476580	.	-	.	Parent=Os02t0128501-00
Chr02	irgsp1_rep	mRNA	1476346	1480233	.	+	.	ID=Os02t0128600-01;Name=Os02t0128600-01;Locus_id=Os02g0128600;CGSNL Gene Symbol=ARFB1B;CGSNL Gene Name=ADP-RIBOSYLATION FACTOR B1B;Oryzabase Gene Symbol Synonym(s)=OsARFB1b%2C ARFB1b;Oryzabase Gene Name Synonym(s)=ADP-ribosylation factor B1b;Note=Similar to ADP-ribosylation factor-like protein.;Transcript_evidence=AK059865 (DDBJ%2C Best hit),AK103009 (DDBJ%2C Best hit);ORF_evidence=B6TGE5 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: small GTPase mediated signal transduction (GO:0007264),Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C SAR1-type (IPR006687),Small GTPase superfamily%2C ARF/SAR type (IPR006689),Small GTPase superfamily%2C ARF type (IPR024156);NIAS_FLcDNA=006-207-D04,J033116J07;Oryzabase=21008;Expression=AK059865;TENOR=Os02t0128600-01;KEGG=Os02t0128600-01
Chr02	irgsp1_rep	five_prime_UTR	1476346	1476528	.	+	.	Parent=Os02t0128600-01
Chr02	irgsp1_rep	CDS	1476529	1476585	.	+	0	Parent=Os02t0128600-01
Chr02	irgsp1_rep	CDS	1477207	1477297	.	+	0	Parent=Os02t0128600-01
Chr02	irgsp1_rep	CDS	1478247	1478362	.	+	2	Parent=Os02t0128600-01
Chr02	irgsp1_rep	CDS	1478834	1478893	.	+	0	Parent=Os02t0128600-01
Chr02	irgsp1_rep	CDS	1479000	1479065	.	+	0	Parent=Os02t0128600-01
Chr02	irgsp1_rep	CDS	1479571	1479765	.	+	0	Parent=Os02t0128600-01
Chr02	irgsp1_rep	three_prime_UTR	1479766	1479779	.	+	.	Parent=Os02t0128600-01
Chr02	irgsp1_rep	three_prime_UTR	1479881	1480233	.	+	.	Parent=Os02t0128600-01
Chr02	irgsp1_rep	mRNA	1481272	1485111	.	-	.	ID=Os02t0128800-01;Name=Os02t0128800-01;Locus_id=Os02g0128800;Oryzabase Gene Symbol Synonym(s)=OsRFPHC-9;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPHC-9%2C RING-HC protein 9;Note=TRAF-type domain containing protein.;Transcript_evidence=AK111795 (DDBJ%2C Best hit);ORF_evidence=NP_001123598.1 (RefSeq);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Biological Process: multicellular organismal development (GO:0007275),Biological Process: protein ubiquitination (GO:0016567),Cellular Component: nucleus (GO:0005634),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Seven-in-absentia protein%2C sina (IPR004162),TRAF-like (IPR008974),Zinc finger%2C SIAH-type (IPR013010),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),TRAF-type (IPR013322),Seven In Absentia Homolog-type (IPR013323),Seven-in-absentia protein%2C TRAF-like domain (IPR018121);NIAS_FLcDNA=J023105K22;Oryzabase=11792;Expression=AK111795;TENOR=Os02t0128800-01;KEGG=Os02t0128800-01 (EC:6.3.2.19)
Chr02	irgsp1_rep	five_prime_UTR	1484979	1485111	.	-	.	Parent=Os02t0128800-01
Chr02	irgsp1_rep	five_prime_UTR	1483689	1483764	.	-	.	Parent=Os02t0128800-01
Chr02	irgsp1_rep	CDS	1483470	1483688	.	-	0	Parent=Os02t0128800-01
Chr02	irgsp1_rep	CDS	1482083	1482469	.	-	0	Parent=Os02t0128800-01
Chr02	irgsp1_rep	CDS	1481511	1481831	.	-	0	Parent=Os02t0128800-01
Chr02	irgsp1_rep	three_prime_UTR	1481272	1481510	.	-	.	Parent=Os02t0128800-01
Chr02	irgsp1_rep	mRNA	1481240	1485041	.	-	.	ID=Os02t0128800-02;Name=Os02t0128800-02;Locus_id=Os02g0128800;Oryzabase Gene Symbol Synonym(s)=OsRFPHC-9;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPHC-9%2C RING-HC protein 9;Note=TRAF-type domain containing protein.;Transcript_evidence=AK119901 (DDBJ%2C Best hit),AK104468 (DDBJ%2C Best hit);ORF_evidence=NP_001123598.1 (RefSeq);NIAS_FLcDNA=002-181-D02,006-301-D04;Oryzabase=11792;Expression=AK119901;TENOR=Os02t0128800-02;KEGG=Os02t0128800-02 (EC:6.3.2.19)
Chr02	irgsp1_rep	five_prime_UTR	1484979	1485041	.	-	.	Parent=Os02t0128800-02
Chr02	irgsp1_rep	five_prime_UTR	1483689	1483764	.	-	.	Parent=Os02t0128800-02
Chr02	irgsp1_rep	CDS	1483470	1483688	.	-	0	Parent=Os02t0128800-02
Chr02	irgsp1_rep	CDS	1482083	1482469	.	-	0	Parent=Os02t0128800-02
Chr02	irgsp1_rep	CDS	1481511	1481831	.	-	0	Parent=Os02t0128800-02
Chr02	irgsp1_rep	three_prime_UTR	1481240	1481510	.	-	.	Parent=Os02t0128800-02
Chr02	irgsp1_rep	mRNA	1481265	1482452	.	-	.	ID=Os02t0128800-03;Name=Os02t0128800-03;Locus_id=Os02g0128800;Oryzabase Gene Symbol Synonym(s)=OsRFPHC-9;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPHC-9%2C RING-HC protein 9;Note=Similar to SINA2.;Transcript_evidence=AK111954 (DDBJ%2C Best hit);ORF_evidence=NP_001123598.1 (RefSeq);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Biological Process: multicellular organismal development (GO:0007275),Biological Process: protein ubiquitination (GO:0016567),Cellular Component: nucleus (GO:0005634),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Seven-in-absentia protein%2C sina (IPR004162),TRAF-like (IPR008974),Zinc finger%2C SIAH-type (IPR013010),TRAF-type (IPR013322),Seven In Absentia Homolog-type (IPR013323),Seven-in-absentia protein%2C TRAF-like domain (IPR018121);NIAS_FLcDNA=001-028-D05;Oryzabase=11792;Expression=AK111954;TENOR=Os02t0128800-03;KEGG=Os02t0128800-03 (EC:6.3.2.19)
Chr02	irgsp1_rep	five_prime_UTR	1482452	1482452	.	-	.	Parent=Os02t0128800-03
Chr02	irgsp1_rep	CDS	1482083	1482451	.	-	0	Parent=Os02t0128800-03
Chr02	irgsp1_rep	CDS	1481511	1481831	.	-	0	Parent=Os02t0128800-03
Chr02	irgsp1_rep	three_prime_UTR	1481265	1481510	.	-	.	Parent=Os02t0128800-03
Chr02	irgsp1_rep	mRNA	1506329	1511906	.	+	.	ID=Os02t0129000-00;Name=Os02t0129000-00;Locus_id=Os02g0129000;Note=Hypothetical conserved gene.;Transcript_evidence=AK119367 (DDBJ%2C Secondary hit);ORF_evidence=B9FW60 (UniProt);InterPro=Transposase%2C Ptta/En/Spm%2C plant (IPR004252);Expression=AK119367;TENOR=Os02t0129000-00;KEGG=Os02t0129000-00
Chr02	irgsp1_rep	five_prime_UTR	1506329	1506953	.	+	.	Parent=Os02t0129000-00
Chr02	irgsp1_rep	five_prime_UTR	1507275	1507276	.	+	.	Parent=Os02t0129000-00
Chr02	irgsp1_rep	CDS	1507277	1507536	.	+	0	Parent=Os02t0129000-00
Chr02	irgsp1_rep	CDS	1507643	1507913	.	+	1	Parent=Os02t0129000-00
Chr02	irgsp1_rep	CDS	1508010	1508213	.	+	0	Parent=Os02t0129000-00
Chr02	irgsp1_rep	CDS	1508323	1508415	.	+	0	Parent=Os02t0129000-00
Chr02	irgsp1_rep	CDS	1508509	1508604	.	+	0	Parent=Os02t0129000-00
Chr02	irgsp1_rep	CDS	1508688	1509032	.	+	0	Parent=Os02t0129000-00
Chr02	irgsp1_rep	CDS	1509123	1509191	.	+	0	Parent=Os02t0129000-00
Chr02	irgsp1_rep	CDS	1509284	1509367	.	+	0	Parent=Os02t0129000-00
Chr02	irgsp1_rep	CDS	1509455	1509520	.	+	0	Parent=Os02t0129000-00
Chr02	irgsp1_rep	CDS	1509735	1509800	.	+	0	Parent=Os02t0129000-00
Chr02	irgsp1_rep	CDS	1509934	1509999	.	+	0	Parent=Os02t0129000-00
Chr02	irgsp1_rep	CDS	1510097	1510162	.	+	0	Parent=Os02t0129000-00
Chr02	irgsp1_rep	CDS	1510280	1510327	.	+	0	Parent=Os02t0129000-00
Chr02	irgsp1_rep	CDS	1510406	1510468	.	+	0	Parent=Os02t0129000-00
Chr02	irgsp1_rep	CDS	1510554	1510619	.	+	0	Parent=Os02t0129000-00
Chr02	irgsp1_rep	CDS	1510782	1510841	.	+	0	Parent=Os02t0129000-00
Chr02	irgsp1_rep	CDS	1510951	1511016	.	+	0	Parent=Os02t0129000-00
Chr02	irgsp1_rep	CDS	1511185	1511232	.	+	0	Parent=Os02t0129000-00
Chr02	irgsp1_rep	CDS	1511642	1511662	.	+	0	Parent=Os02t0129000-00
Chr02	irgsp1_rep	three_prime_UTR	1511663	1511906	.	+	.	Parent=Os02t0129000-00
Chr02	irgsp1_rep	mRNA	1532451	1535776	.	-	.	ID=Os02t0129300-01;Name=Os02t0129300-01;Locus_id=Os02g0129300;Note=Conserved hypothetical protein.;Transcript_evidence=AK065700 (DDBJ%2C Best hit);ORF_evidence=B8AH08 (UniProt);NIAS_FLcDNA=J013035J04;TENOR=Os02t0129300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	1535689	1535776	.	-	.	Parent=Os02t0129300-01
Chr02	irgsp1_rep	CDS	1535623	1535688	.	-	0	Parent=Os02t0129300-01
Chr02	irgsp1_rep	CDS	1535341	1535523	.	-	0	Parent=Os02t0129300-01
Chr02	irgsp1_rep	CDS	1534737	1534739	.	-	0	Parent=Os02t0129300-01
Chr02	irgsp1_rep	three_prime_UTR	1534361	1534736	.	-	.	Parent=Os02t0129300-01
Chr02	irgsp1_rep	three_prime_UTR	1533960	1534152	.	-	.	Parent=Os02t0129300-01
Chr02	irgsp1_rep	three_prime_UTR	1533782	1533880	.	-	.	Parent=Os02t0129300-01
Chr02	irgsp1_rep	three_prime_UTR	1533359	1533593	.	-	.	Parent=Os02t0129300-01
Chr02	irgsp1_rep	three_prime_UTR	1532451	1532768	.	-	.	Parent=Os02t0129300-01
Chr02	irgsp1_rep	mRNA	1539410	1547341	.	+	.	ID=Os02t0129600-01;Name=Os02t0129600-01;Locus_id=Os02g0129600;CGSNL Gene Symbol=BMY10;CGSNL Gene Name=BETA-AMYLASE 10;Oryzabase Gene Symbol Synonym(s)=OsBMY10;Oryzabase Gene Name Synonym(s)=beta-amylase 10;Note=Glycoside hydrolase%2C subgroup%2C catalytic core domain containing protein.;Transcript_evidence=AK120049 (DDBJ%2C Best hit);ORF_evidence=NP_001032014.1 (RefSeq);GO=Biological Process: polysaccharide catabolic process (GO:0000272),Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: beta-amylase activity (GO:0016161),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 14 (IPR001554),BZR1%2C transcriptional repressor (IPR008540),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J013000A07;Oryzabase=21591;Expression=AK120049;TENOR=Os02t0129600-01;KEGG=Os02t0129600-01
Chr02	irgsp1_rep	five_prime_UTR	1539410	1539487	.	+	.	Parent=Os02t0129600-01
Chr02	irgsp1_rep	CDS	1539488	1539904	.	+	0	Parent=Os02t0129600-01
Chr02	irgsp1_rep	CDS	1540127	1540354	.	+	0	Parent=Os02t0129600-01
Chr02	irgsp1_rep	CDS	1542174	1542248	.	+	0	Parent=Os02t0129600-01
Chr02	irgsp1_rep	CDS	1543597	1543800	.	+	0	Parent=Os02t0129600-01
Chr02	irgsp1_rep	CDS	1544189	1544394	.	+	0	Parent=Os02t0129600-01
Chr02	irgsp1_rep	CDS	1544695	1544713	.	+	1	Parent=Os02t0129600-01
Chr02	irgsp1_rep	three_prime_UTR	1544714	1544848	.	+	.	Parent=Os02t0129600-01
Chr02	irgsp1_rep	three_prime_UTR	1545199	1545459	.	+	.	Parent=Os02t0129600-01
Chr02	irgsp1_rep	three_prime_UTR	1546059	1546271	.	+	.	Parent=Os02t0129600-01
Chr02	irgsp1_rep	three_prime_UTR	1546365	1546587	.	+	.	Parent=Os02t0129600-01
Chr02	irgsp1_rep	three_prime_UTR	1546956	1547341	.	+	.	Parent=Os02t0129600-01
Chr02	irgsp1_rep	mRNA	1551553	1553359	.	-	.	ID=Os02t0129700-01;Name=Os02t0129700-01;Locus_id=Os02g0129700;Note=Hypothetical protein.;Transcript_evidence=AK065610 (DDBJ%2C Best hit),AK063802 (DDBJ%2C Best hit),AK287498 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013031M24,001-121-F10,J043033I21;Expression=AK065610;TENOR=Os02t0129700-01;KEGG=Os02t0129700-01
Chr02	irgsp1_rep	five_prime_UTR	1553121	1553359	.	-	.	Parent=Os02t0129700-01
Chr02	irgsp1_rep	CDS	1552809	1553120	.	-	0	Parent=Os02t0129700-01
Chr02	irgsp1_rep	three_prime_UTR	1551553	1552808	.	-	.	Parent=Os02t0129700-01
Chr02	irgsp1_rep	mRNA	1558563	1559143	.	-	.	ID=Os02t0129800-01;Name=Os02t0129800-01;Locus_id=Os02g0129800;Note=Conserved hypothetical protein.;Transcript_evidence=AK109213 (DDBJ%2C Best hit);ORF_evidence=A2X0H5 (UniProt);NIAS_FLcDNA=002-156-D07;Expression=AK109213;TENOR=Os02t0129800-01;KEGG=Os02t0129800-01
Chr02	irgsp1_rep	five_prime_UTR	1559049	1559143	.	-	.	Parent=Os02t0129800-01
Chr02	irgsp1_rep	CDS	1558740	1559048	.	-	0	Parent=Os02t0129800-01
Chr02	irgsp1_rep	three_prime_UTR	1558563	1558739	.	-	.	Parent=Os02t0129800-01
Chr02	irgsp1_rep	mRNA	1560757	1563229	.	+	.	ID=Os02t0129900-01;Name=Os02t0129900-01;Locus_id=Os02g0129900;Note=Similar to hydrolase%2C acting on ester bonds.;Transcript_evidence=AK287986 (DDBJ%2C Best hit);ORF_evidence=NP_197269.2 (RefSeq);GO=Biological Process: GPI anchor metabolic process (GO:0006505),Biological Process: intracellular protein transport (GO:0006886),Cellular Component: intrinsic to endoplasmic reticulum membrane (GO:0031227),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=GPI inositol-deacylase PGAP1-like (IPR012908);NIAS_FLcDNA=J075094H22;TENOR=Os02t0129900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	1560757	1560809	.	+	.	Parent=Os02t0129900-01
Chr02	irgsp1_rep	CDS	1560810	1560905	.	+	0	Parent=Os02t0129900-01
Chr02	irgsp1_rep	CDS	1561007	1561185	.	+	0	Parent=Os02t0129900-01
Chr02	irgsp1_rep	CDS	1561281	1561333	.	+	1	Parent=Os02t0129900-01
Chr02	irgsp1_rep	CDS	1561673	1561787	.	+	2	Parent=Os02t0129900-01
Chr02	irgsp1_rep	CDS	1562073	1562195	.	+	1	Parent=Os02t0129900-01
Chr02	irgsp1_rep	CDS	1562558	1562729	.	+	1	Parent=Os02t0129900-01
Chr02	irgsp1_rep	CDS	1562815	1563000	.	+	0	Parent=Os02t0129900-01
Chr02	irgsp1_rep	three_prime_UTR	1563001	1563229	.	+	.	Parent=Os02t0129900-01
Chr02	irgsp1_rep	mRNA	1563426	1565446	.	-	.	ID=Os02t0130000-01;Name=Os02t0130000-01;Locus_id=Os02g0130000;Note=Similar to SWIb domain-containing protein (Fragment).;Transcript_evidence=AK106464 (DDBJ%2C Best hit);ORF_evidence=B6THI7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=SWIB/MDM2 domain (IPR003121),SWIB domain (IPR019835);NIAS_FLcDNA=002-103-H01;Expression=AK106464;TENOR=Os02t0130000-01;KEGG=Os02t0130000-01
Chr02	irgsp1_rep	five_prime_UTR	1565363	1565446	.	-	.	Parent=Os02t0130000-01
Chr02	irgsp1_rep	CDS	1565093	1565362	.	-	0	Parent=Os02t0130000-01
Chr02	irgsp1_rep	CDS	1563805	1563930	.	-	0	Parent=Os02t0130000-01
Chr02	irgsp1_rep	three_prime_UTR	1563426	1563804	.	-	.	Parent=Os02t0130000-01
Chr02	irgsp1_rep	mRNA	1566154	1569479	.	-	.	ID=Os02t0130100-01;Name=Os02t0130100-01;Locus_id=Os02g0130100;CGSNL Gene Symbol=PDX2;CGSNL Gene Name=PYRIDOXAL PHOSPHATE SYNTHASE PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsPDX2;Oryzabase Gene Name Synonym(s)=Pyridoxal phosphate synthase protein 2;Note=SNO glutamine amidotransferase family protein.;Transcript_evidence=AK121866 (DDBJ%2C Best hit);ORF_evidence=B6SNW4 (UniProt);InterPro=Glutamine amidotransferase subunit PdxT (IPR002161),PdxT/SNO family%2C conserved site (IPR021196);NIAS_FLcDNA=J033103H03;Oryzabase=23099;Expression=AK121866;TENOR=Os02t0130100-01;KEGG=Os02t0130100-01 (EC:2.6.-.-)
Chr02	irgsp1_rep	five_prime_UTR	1569444	1569479	.	-	.	Parent=Os02t0130100-01
Chr02	irgsp1_rep	CDS	1569389	1569443	.	-	0	Parent=Os02t0130100-01
Chr02	irgsp1_rep	CDS	1569158	1569285	.	-	2	Parent=Os02t0130100-01
Chr02	irgsp1_rep	CDS	1567939	1568026	.	-	0	Parent=Os02t0130100-01
Chr02	irgsp1_rep	CDS	1567797	1567870	.	-	2	Parent=Os02t0130100-01
Chr02	irgsp1_rep	CDS	1567495	1567686	.	-	0	Parent=Os02t0130100-01
Chr02	irgsp1_rep	CDS	1566619	1566716	.	-	0	Parent=Os02t0130100-01
Chr02	irgsp1_rep	CDS	1566396	1566528	.	-	1	Parent=Os02t0130100-01
Chr02	irgsp1_rep	three_prime_UTR	1566154	1566395	.	-	.	Parent=Os02t0130100-01
Chr02	irgsp1_rep	mRNA	1570152	1574900	.	-	.	ID=Os02t0130200-01;Name=Os02t0130200-01;Locus_id=Os02g0130200;Oryzabase Gene Symbol Synonym(s)=OsPGL15%2C PGL15;Oryzabase Gene Name Synonym(s)=Polygalacturonases-Like 15%2C PG-like 15;Note=Pectin lyase fold/virulence factor domain containing protein.;Transcript_evidence=AK106802 (DDBJ%2C Best hit);ORF_evidence=NP_173760.2 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=002-116-B12;Oryzabase=22292;Expression=AK106802;TENOR=Os02t0130200-01;KEGG=Os02t0130200-01
Chr02	irgsp1_rep	five_prime_UTR	1574739	1574900	.	-	.	Parent=Os02t0130200-01
Chr02	irgsp1_rep	CDS	1574364	1574738	.	-	0	Parent=Os02t0130200-01
Chr02	irgsp1_rep	CDS	1572942	1573070	.	-	0	Parent=Os02t0130200-01
Chr02	irgsp1_rep	CDS	1572336	1572506	.	-	0	Parent=Os02t0130200-01
Chr02	irgsp1_rep	CDS	1572225	1572245	.	-	0	Parent=Os02t0130200-01
Chr02	irgsp1_rep	CDS	1570395	1571225	.	-	0	Parent=Os02t0130200-01
Chr02	irgsp1_rep	three_prime_UTR	1570152	1570394	.	-	.	Parent=Os02t0130200-01
Chr02	irgsp1_rep	mRNA	1570484	1572511	.	+	.	ID=Os02t0130250-00;Name=Os02t0130250-00;Locus_id=Os02g0130250;Note=Hypothetical protein.;Transcript_evidence=tplb0028j17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0130250-00
Chr02	irgsp1_rep	five_prime_UTR	1570484	1570839	.	+	.	Parent=Os02t0130250-00
Chr02	irgsp1_rep	CDS	1570840	1571254	.	+	0	Parent=Os02t0130250-00
Chr02	irgsp1_rep	CDS	1572343	1572511	.	+	2	Parent=Os02t0130250-00
Chr02	irgsp1_rep	mRNA	1575453	1579224	.	-	.	ID=Os02t0130300-01;Name=Os02t0130300-01;Locus_id=Os02g0130300;Note=Hypothetical conserved gene.;Transcript_evidence=AK106339 (DDBJ%2C Best hit);ORF_evidence=A2X0I0 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),S-ribonuclease binding protein%2C SBP1%2C pollen (IPR017066);NIAS_FLcDNA=002-101-G06;Expression=AK106339;TENOR=Os02t0130300-01;KEGG=Os02t0130300-01
Chr02	irgsp1_rep	five_prime_UTR	1579173	1579224	.	-	.	Parent=Os02t0130300-01
Chr02	irgsp1_rep	five_prime_UTR	1578731	1578769	.	-	.	Parent=Os02t0130300-01
Chr02	irgsp1_rep	CDS	1578711	1578730	.	-	0	Parent=Os02t0130300-01
Chr02	irgsp1_rep	CDS	1577315	1577657	.	-	1	Parent=Os02t0130300-01
Chr02	irgsp1_rep	CDS	1576211	1576759	.	-	0	Parent=Os02t0130300-01
Chr02	irgsp1_rep	three_prime_UTR	1575453	1576210	.	-	.	Parent=Os02t0130300-01
Chr02	irgsp1_rep	mRNA	1575930	1579154	.	-	.	ID=Os02t0130300-02;Name=Os02t0130300-02;Locus_id=Os02g0130300;Note=S-ribonuclease binding protein%2C SBP1%2C pollen domain containing protein.;Transcript_evidence=AK102708 (DDBJ%2C Best hit);ORF_evidence=A2X0I0 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),S-ribonuclease binding protein%2C SBP1%2C pollen (IPR017066);NIAS_FLcDNA=J033104F07;Expression=AK102708;TENOR=Os02t0130300-02;KEGG=Os02t0130300-02
Chr02	irgsp1_rep	five_prime_UTR	1579077	1579154	.	-	.	Parent=Os02t0130300-02
Chr02	irgsp1_rep	five_prime_UTR	1578923	1578978	.	-	.	Parent=Os02t0130300-02
Chr02	irgsp1_rep	five_prime_UTR	1578817	1578828	.	-	.	Parent=Os02t0130300-02
Chr02	irgsp1_rep	CDS	1578684	1578816	.	-	0	Parent=Os02t0130300-02
Chr02	irgsp1_rep	CDS	1577315	1577664	.	-	2	Parent=Os02t0130300-02
Chr02	irgsp1_rep	CDS	1576211	1576759	.	-	0	Parent=Os02t0130300-02
Chr02	irgsp1_rep	three_prime_UTR	1575930	1576210	.	-	.	Parent=Os02t0130300-02
Chr02	irgsp1_rep	mRNA	1576028	1576702	.	-	.	ID=Os02t0130300-03;Name=Os02t0130300-03;Locus_id=Os02g0130300;Note=Hypothetical conserved gene.;Transcript_evidence=AK058789 (DDBJ%2C Best hit);ORF_evidence=Q6ZG99 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841);NIAS_FLcDNA=001-002-E12;Expression=AK058789;TENOR=Os02t0130300-03;KEGG=Os02t0130300-03
Chr02	irgsp1_rep	CDS	1576211	1576702	.	-	0	Parent=Os02t0130300-03
Chr02	irgsp1_rep	three_prime_UTR	1576028	1576210	.	-	.	Parent=Os02t0130300-03
Chr02	irgsp1_rep	mRNA	1595033	1599311	.	+	.	ID=Os02t0130600-01;Name=Os02t0130600-01;Locus_id=Os02g0130600;Note=Conserved hypothetical protein.;Transcript_evidence=AK120974 (DDBJ%2C Best hit);ORF_evidence=B8AH13 (UniProt);NIAS_FLcDNA=J023041I07;Expression=AK120974;TENOR=Os02t0130600-01;KEGG=Os02t0130600-01
Chr02	irgsp1_rep	five_prime_UTR	1595033	1595055	.	+	.	Parent=Os02t0130600-01
Chr02	irgsp1_rep	CDS	1595056	1595498	.	+	0	Parent=Os02t0130600-01
Chr02	irgsp1_rep	CDS	1596621	1596654	.	+	1	Parent=Os02t0130600-01
Chr02	irgsp1_rep	CDS	1596791	1596979	.	+	0	Parent=Os02t0130600-01
Chr02	irgsp1_rep	CDS	1597956	1598045	.	+	0	Parent=Os02t0130600-01
Chr02	irgsp1_rep	CDS	1598136	1598201	.	+	0	Parent=Os02t0130600-01
Chr02	irgsp1_rep	CDS	1598299	1598390	.	+	0	Parent=Os02t0130600-01
Chr02	irgsp1_rep	CDS	1598501	1598548	.	+	1	Parent=Os02t0130600-01
Chr02	irgsp1_rep	CDS	1598680	1598806	.	+	1	Parent=Os02t0130600-01
Chr02	irgsp1_rep	three_prime_UTR	1598807	1599311	.	+	.	Parent=Os02t0130600-01
Chr02	irgsp1_rep	mRNA	1600567	1600896	.	+	.	ID=Os02t0130700-00;Name=Os02t0130700-00;Locus_id=Os02g0130700;CGSNL Gene Symbol=THI22;CGSNL Gene Name=THIONIN 22;Oryzabase Gene Symbol Synonym(s)=OsTHI22%2C OsTHION22%2C THION22;Oryzabase Gene Name Synonym(s)=Thionin 22;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001172785.1 (RefSeq);Oryzabase=23351;TENOR=Os02t0130700-00;KEGG=Os02t0130700-00
Chr02	irgsp1_rep	CDS	1600567	1600896	.	+	0	Parent=Os02t0130700-00
Chr02	irgsp1_rep	mRNA	1602242	1603070	.	-	.	ID=Os02t0130800-00;Name=Os02t0130800-00;Locus_id=Os02g0130800;Oryzabase Gene Symbol Synonym(s)=OsFbox062%2C OsFbox62%2C Os_F0282;Oryzabase Gene Name Synonym(s)=F-box protein 62;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=EU975717 (DDBJ);ORF_evidence=B9F2A0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=16860;TENOR=Os02t0130800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	1603064	1603070	.	-	.	Parent=Os02t0130800-00
Chr02	irgsp1_rep	CDS	1602242	1603063	.	-	0	Parent=Os02t0130800-00
Chr02	irgsp1_rep	mRNA	1603372	1607211	.	+	.	ID=Os02t0130900-01;Name=Os02t0130900-01;Locus_id=Os02g0130900;Note=Ubiquitin-conjugating enzyme E2C-binding protein domain containing protein.;Transcript_evidence=AK102856 (DDBJ%2C Best hit);ORF_evidence=A2X0I7 (UniProt);InterPro=Ubiquitin-conjugating enzyme E2C-binding protein (IPR019193);NIAS_FLcDNA=J033110M10;TENOR=Os02t0130900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	1603372	1603380	.	+	.	Parent=Os02t0130900-01
Chr02	irgsp1_rep	CDS	1603381	1603792	.	+	0	Parent=Os02t0130900-01
Chr02	irgsp1_rep	CDS	1604054	1604132	.	+	2	Parent=Os02t0130900-01
Chr02	irgsp1_rep	CDS	1604993	1605862	.	+	1	Parent=Os02t0130900-01
Chr02	irgsp1_rep	CDS	1606019	1606276	.	+	1	Parent=Os02t0130900-01
Chr02	irgsp1_rep	CDS	1606675	1606834	.	+	1	Parent=Os02t0130900-01
Chr02	irgsp1_rep	three_prime_UTR	1606835	1607211	.	+	.	Parent=Os02t0130900-01
Chr02	irgsp1_rep	mRNA	1610886	1611567	.	-	.	ID=Os02t0131000-01;Name=Os02t0131000-01;Locus_id=Os02g0131000;Note=Conserved hypothetical protein.;Transcript_evidence=AK062905 (DDBJ%2C Best hit);ORF_evidence=A2X0I8 (UniProt);NIAS_FLcDNA=001-108-F09;Expression=AK062905;TENOR=Os02t0131000-01;KEGG=Os02t0131000-01
Chr02	irgsp1_rep	five_prime_UTR	1611558	1611567	.	-	.	Parent=Os02t0131000-01
Chr02	irgsp1_rep	CDS	1611135	1611557	.	-	0	Parent=Os02t0131000-01
Chr02	irgsp1_rep	three_prime_UTR	1610886	1611134	.	-	.	Parent=Os02t0131000-01
Chr02	irgsp1_rep	mRNA	1615699	1630951	.	-	.	ID=Os02t0131050-01;Name=Os02t0131050-01;Locus_id=Os02g0131050;Note=Hypothetical gene.;Transcript_evidence=AK242812 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090061D23;TENOR=Os02t0131050-01
Chr02	irgsp1_rep	five_prime_UTR	1630478	1630951	.	-	.	Parent=Os02t0131050-01
Chr02	irgsp1_rep	five_prime_UTR	1623866	1624305	.	-	.	Parent=Os02t0131050-01
Chr02	irgsp1_rep	five_prime_UTR	1623664	1623700	.	-	.	Parent=Os02t0131050-01
Chr02	irgsp1_rep	five_prime_UTR	1622614	1623553	.	-	.	Parent=Os02t0131050-01
Chr02	irgsp1_rep	five_prime_UTR	1622264	1622476	.	-	.	Parent=Os02t0131050-01
Chr02	irgsp1_rep	five_prime_UTR	1621754	1622182	.	-	.	Parent=Os02t0131050-01
Chr02	irgsp1_rep	five_prime_UTR	1621595	1621672	.	-	.	Parent=Os02t0131050-01
Chr02	irgsp1_rep	five_prime_UTR	1621253	1621453	.	-	.	Parent=Os02t0131050-01
Chr02	irgsp1_rep	five_prime_UTR	1620711	1620946	.	-	.	Parent=Os02t0131050-01
Chr02	irgsp1_rep	five_prime_UTR	1620445	1620522	.	-	.	Parent=Os02t0131050-01
Chr02	irgsp1_rep	five_prime_UTR	1619744	1619944	.	-	.	Parent=Os02t0131050-01
Chr02	irgsp1_rep	five_prime_UTR	1619215	1619630	.	-	.	Parent=Os02t0131050-01
Chr02	irgsp1_rep	five_prime_UTR	1618992	1619101	.	-	.	Parent=Os02t0131050-01
Chr02	irgsp1_rep	five_prime_UTR	1617568	1617768	.	-	.	Parent=Os02t0131050-01
Chr02	irgsp1_rep	five_prime_UTR	1616642	1616727	.	-	.	Parent=Os02t0131050-01
Chr02	irgsp1_rep	five_prime_UTR	1616471	1616564	.	-	.	Parent=Os02t0131050-01
Chr02	irgsp1_rep	five_prime_UTR	1615941	1616364	.	-	.	Parent=Os02t0131050-01
Chr02	irgsp1_rep	CDS	1615699	1615940	.	-	0	Parent=Os02t0131050-01
Chr02	irgsp1_rep	mRNA	1626975	1628901	.	+	.	ID=Os02t0131100-01;Name=Os02t0131100-01;Locus_id=Os02g0131100;Note=Hypothetical conserved gene.;Transcript_evidence=AK105854 (DDBJ%2C Best hit);ORF_evidence=B9F2A1 (UniProt);NIAS_FLcDNA=001-203-H03;Expression=AK105854;TENOR=Os02t0131100-01;KEGG=Os02t0131100-01
Chr02	irgsp1_rep	CDS	1626975	1627322	.	+	0	Parent=Os02t0131100-01
Chr02	irgsp1_rep	CDS	1627423	1627719	.	+	0	Parent=Os02t0131100-01
Chr02	irgsp1_rep	CDS	1627801	1628901	.	+	0	Parent=Os02t0131100-01
Chr02	irgsp1_rep	mRNA	1628399	1630134	.	+	.	ID=Os02t0131100-02;Name=Os02t0131100-02;Locus_id=Os02g0131100;Note=Conserved hypothetical protein.;Transcript_evidence=AK060381 (DDBJ%2C Best hit);ORF_evidence=B9F2A1 (UniProt);NIAS_FLcDNA=001-009-E02;TENOR=Os02t0131100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	1628399	1628400	.	+	.	Parent=Os02t0131100-02
Chr02	irgsp1_rep	CDS	1628401	1629864	.	+	0	Parent=Os02t0131100-02
Chr02	irgsp1_rep	three_prime_UTR	1629865	1630134	.	+	.	Parent=Os02t0131100-02
Chr02	irgsp1_rep	mRNA	1632049	1636772	.	-	.	ID=Os02t0131200-01;Name=Os02t0131200-01;Locus_id=Os02g0131200;Note=Similar to RNA-binding region RNP-1 (RNA recognition motif).;Transcript_evidence=AK069931 (DDBJ%2C Best hit);ORF_evidence=A3A2T3 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 3 (IPR000312),Glycosyl transferase%2C family 3%2C N-terminal (IPR017459);NIAS_FLcDNA=J023035J06;Oryzabase=15237;Expression=AK069931;TENOR=Os02t0131200-01;KEGG=Os02t0131200-01
Chr02	irgsp1_rep	five_prime_UTR	1636710	1636772	.	-	.	Parent=Os02t0131200-01
Chr02	irgsp1_rep	CDS	1636340	1636709	.	-	0	Parent=Os02t0131200-01
Chr02	irgsp1_rep	CDS	1635326	1635805	.	-	2	Parent=Os02t0131200-01
Chr02	irgsp1_rep	CDS	1635092	1635237	.	-	2	Parent=Os02t0131200-01
Chr02	irgsp1_rep	CDS	1634866	1634949	.	-	0	Parent=Os02t0131200-01
Chr02	irgsp1_rep	CDS	1634718	1634770	.	-	0	Parent=Os02t0131200-01
Chr02	irgsp1_rep	CDS	1634297	1634378	.	-	1	Parent=Os02t0131200-01
Chr02	irgsp1_rep	CDS	1633622	1633729	.	-	0	Parent=Os02t0131200-01
Chr02	irgsp1_rep	CDS	1633209	1633332	.	-	0	Parent=Os02t0131200-01
Chr02	irgsp1_rep	CDS	1632873	1632958	.	-	2	Parent=Os02t0131200-01
Chr02	irgsp1_rep	CDS	1632425	1632646	.	-	0	Parent=Os02t0131200-01
Chr02	irgsp1_rep	three_prime_UTR	1632049	1632424	.	-	.	Parent=Os02t0131200-01
Chr02	irgsp1_rep	mRNA	1637601	1641772	.	+	.	ID=Os02t0131300-01;Name=Os02t0131300-01;Locus_id=Os02g0131300;Oryzabase Gene Symbol Synonym(s)=OsMASP1;Oryzabase Gene Name Synonym(s)=mitochondrial ATP synthase precursor 1;Note=Similar to Mitochondrial ATP synthase.;Transcript_evidence=AK066913 (DDBJ%2C Best hit);ORF_evidence=B6TCR9 (UniProt);NIAS_FLcDNA=J013089B14;Oryzabase=15293;Expression=AK066913;TENOR=Os02t0131300-01;KEGG=Os02t0131300-01
Chr02	irgsp1_rep	five_prime_UTR	1637601	1637684	.	+	.	Parent=Os02t0131300-01
Chr02	irgsp1_rep	CDS	1637685	1637723	.	+	0	Parent=Os02t0131300-01
Chr02	irgsp1_rep	CDS	1639036	1639129	.	+	0	Parent=Os02t0131300-01
Chr02	irgsp1_rep	CDS	1639493	1639637	.	+	2	Parent=Os02t0131300-01
Chr02	irgsp1_rep	CDS	1640207	1640317	.	+	1	Parent=Os02t0131300-01
Chr02	irgsp1_rep	CDS	1640476	1640622	.	+	1	Parent=Os02t0131300-01
Chr02	irgsp1_rep	CDS	1641097	1641219	.	+	1	Parent=Os02t0131300-01
Chr02	irgsp1_rep	CDS	1641391	1641454	.	+	1	Parent=Os02t0131300-01
Chr02	irgsp1_rep	three_prime_UTR	1641455	1641772	.	+	.	Parent=Os02t0131300-01
Chr02	irgsp1_rep	mRNA	1641425	1641825	.	+	.	ID=Os02t0131300-02;Name=Os02t0131300-02;Locus_id=Os02g0131300;Oryzabase Gene Symbol Synonym(s)=OsMASP1;Oryzabase Gene Name Synonym(s)=mitochondrial ATP synthase precursor 1;Note=Non-protein coding transcript.;Transcript_evidence=AK061919 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-042-B04;Oryzabase=15293;TENOR=Os02t0131300-02
Chr02	irgsp1_rep	exon	1641425	1641825	.	+	.	Parent=Os02t0131300-02
Chr02	irgsp1_rep	mRNA	1644223	1648808	.	-	.	ID=Os02t0131400-00;Name=Os02t0131400-00;Locus_id=Os02g0131400;Note=Beta-D-glucan exohydrolase%2C isoenzyme ExoII (EC 3.2.1.58).;Transcript_evidence=AK363981 (DDBJ);ORF_evidence=NP_001130296.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 3%2C N-terminal (IPR001764),Glycoside hydrolase%2C family 3%2C C-terminal (IPR002772),Glycoside hydrolase%2C superfamily (IPR017853);TENOR=Os02t0131400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	1648538	1648808	.	-	0	Parent=Os02t0131400-00
Chr02	irgsp1_rep	CDS	1647680	1647884	.	-	2	Parent=Os02t0131400-00
Chr02	irgsp1_rep	CDS	1646322	1646805	.	-	1	Parent=Os02t0131400-00
Chr02	irgsp1_rep	CDS	1645328	1645432	.	-	0	Parent=Os02t0131400-00
Chr02	irgsp1_rep	CDS	1644280	1645161	.	-	0	Parent=Os02t0131400-00
Chr02	irgsp1_rep	three_prime_UTR	1644223	1644279	.	-	.	Parent=Os02t0131400-00
Chr02	irgsp1_rep	mRNA	1644301	1648677	.	+	.	ID=Os02t0131500-00;Name=Os02t0131500-00;Locus_id=Os02g0131500;Note=Hypothetical protein.;Transcript_evidence=tplb0060e05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0131500-00
Chr02	irgsp1_rep	five_prime_UTR	1644301	1645138	.	+	.	Parent=Os02t0131500-00
Chr02	irgsp1_rep	five_prime_UTR	1645294	1645378	.	+	.	Parent=Os02t0131500-00
Chr02	irgsp1_rep	CDS	1645379	1645440	.	+	0	Parent=Os02t0131500-00
Chr02	irgsp1_rep	CDS	1646330	1646808	.	+	1	Parent=Os02t0131500-00
Chr02	irgsp1_rep	CDS	1647683	1647908	.	+	2	Parent=Os02t0131500-00
Chr02	irgsp1_rep	CDS	1648567	1648677	.	+	1	Parent=Os02t0131500-00
Chr02	irgsp1_rep	mRNA	1650800	1651201	.	+	.	ID=Os02t0131600-00;Name=Os02t0131600-00;Locus_id=Os02g0131600;Note=Similar to Mitochondrial import receptor subunit TOM22 homolog (Translocase of outer membrane 22 kDa subunit homolog) (TOM9).;Transcript_evidence=CT828266 (DDBJ%2C Best hit);ORF_evidence=B6U2X6 (UniProt);InterPro=Mitochondrial outer membrane translocase complex%2C subunit Tom22%2C plant (IPR017411);TENOR=Os02t0131600-00;KEGG=Os02t0131600-00
Chr02	irgsp1_rep	five_prime_UTR	1650800	1650814	.	+	.	Parent=Os02t0131600-00
Chr02	irgsp1_rep	CDS	1650815	1651072	.	+	0	Parent=Os02t0131600-00
Chr02	irgsp1_rep	three_prime_UTR	1651073	1651201	.	+	.	Parent=Os02t0131600-00
Chr02	irgsp1_rep	mRNA	1652110	1655309	.	-	.	ID=Os02t0131700-00;Name=Os02t0131700-00;Locus_id=Os02g0131700;Note=Similar to RNA binding protein.;Transcript_evidence=CT830787 (DDBJ%2C Best hit);ORF_evidence=B6T5S5 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: intracellular (GO:0005622),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nuclear transport factor 2 (IPR002075),Nucleotide-binding%2C alpha-beta plait (IPR012677),Nuclear transport factor 2%2C Eukaryote (IPR018222);TENOR=Os02t0131700-00;KEGG=Os02t0131700-00
Chr02	irgsp1_rep	five_prime_UTR	1655124	1655309	.	-	.	Parent=Os02t0131700-00
Chr02	irgsp1_rep	CDS	1655091	1655123	.	-	0	Parent=Os02t0131700-00
Chr02	irgsp1_rep	CDS	1654872	1655012	.	-	0	Parent=Os02t0131700-00
Chr02	irgsp1_rep	CDS	1654253	1654550	.	-	0	Parent=Os02t0131700-00
Chr02	irgsp1_rep	CDS	1653604	1653875	.	-	2	Parent=Os02t0131700-00
Chr02	irgsp1_rep	CDS	1653334	1653508	.	-	0	Parent=Os02t0131700-00
Chr02	irgsp1_rep	CDS	1653120	1653238	.	-	2	Parent=Os02t0131700-00
Chr02	irgsp1_rep	CDS	1652976	1653041	.	-	0	Parent=Os02t0131700-00
Chr02	irgsp1_rep	CDS	1652658	1652733	.	-	0	Parent=Os02t0131700-00
Chr02	irgsp1_rep	CDS	1652356	1652522	.	-	2	Parent=Os02t0131700-00
Chr02	irgsp1_rep	three_prime_UTR	1652110	1652355	.	-	.	Parent=Os02t0131700-00
Chr02	irgsp1_rep	mRNA	1658576	1662644	.	-	.	ID=Os02t0131800-01;Name=Os02t0131800-01;Locus_id=Os02g0131800;RAP-DB Gene Symbol Synonym(s)=NRAMP4%2C OsNRAMP4%2C Nrat1%2C Nramp6%2C OsNRAT1;RAP-DB Gene Name Synonym(s)=NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 4%2C BACTERIOCIDE EFFECT 4%2C Nramp aluminum transporter 1;CGSNL Gene Symbol=NRAMP4;CGSNL Gene Name=NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OsNRAMP4%2C Nrat1%2C Nramp6%2C OsNRAT1%2C FCO5;Oryzabase Gene Name Synonym(s)=BACTERIOCIDE EFFECT 4%2C Nramp aluminum transporter 1%2C Functioning in Cesium Over-transport 5;Note=Trivalent AI influx transporter%2C Aluminum (Al) tolerance;Transcript_evidence=AB525887,AK102180;ORF_evidence=Q6ZG85;GO=Biological Process: transport (GO:0006810),Molecular Function: transporter activity (GO:0005215),Cellular Component: membrane (GO:0016020);InterPro=NRAMP family (IPR001046);NIAS_FLcDNA=J033086M02;Manual Curation=April 6%2C 2011;Literature_PMID=20937890,21248479;Oryzabase=8328;Expression=AK102180;TENOR=Os02t0131800-01;KEGG=Os02t0131800-01
Chr02	irgsp1_rep	five_prime_UTR	1662590	1662644	.	-	.	Parent=Os02t0131800-01
Chr02	irgsp1_rep	CDS	1662455	1662589	.	-	0	Parent=Os02t0131800-01
Chr02	irgsp1_rep	CDS	1662283	1662358	.	-	0	Parent=Os02t0131800-01
Chr02	irgsp1_rep	CDS	1662128	1662168	.	-	2	Parent=Os02t0131800-01
Chr02	irgsp1_rep	CDS	1661153	1661231	.	-	0	Parent=Os02t0131800-01
Chr02	irgsp1_rep	CDS	1660948	1661052	.	-	2	Parent=Os02t0131800-01
Chr02	irgsp1_rep	CDS	1660738	1660847	.	-	2	Parent=Os02t0131800-01
Chr02	irgsp1_rep	CDS	1660458	1660639	.	-	0	Parent=Os02t0131800-01
Chr02	irgsp1_rep	CDS	1660283	1660352	.	-	1	Parent=Os02t0131800-01
Chr02	irgsp1_rep	CDS	1660020	1660193	.	-	0	Parent=Os02t0131800-01
Chr02	irgsp1_rep	CDS	1659748	1659852	.	-	0	Parent=Os02t0131800-01
Chr02	irgsp1_rep	CDS	1659430	1659561	.	-	0	Parent=Os02t0131800-01
Chr02	irgsp1_rep	CDS	1659223	1659318	.	-	0	Parent=Os02t0131800-01
Chr02	irgsp1_rep	CDS	1658757	1659089	.	-	0	Parent=Os02t0131800-01
Chr02	irgsp1_rep	three_prime_UTR	1658576	1658756	.	-	.	Parent=Os02t0131800-01
Chr02	irgsp1_rep	mRNA	1658840	1659856	.	+	.	ID=Os02t0131850-00;Name=Os02t0131850-00;Locus_id=Os02g0131850;Note=Hypothetical gene.;Transcript_evidence=BT086902 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0131850-00;KEGG=Os02t0131850-00
Chr02	irgsp1_rep	five_prime_UTR	1658840	1659087	.	+	.	Parent=Os02t0131850-00
Chr02	irgsp1_rep	five_prime_UTR	1659218	1659226	.	+	.	Parent=Os02t0131850-00
Chr02	irgsp1_rep	CDS	1659227	1659549	.	+	0	Parent=Os02t0131850-00
Chr02	irgsp1_rep	CDS	1659729	1659807	.	+	1	Parent=Os02t0131850-00
Chr02	irgsp1_rep	three_prime_UTR	1659808	1659856	.	+	.	Parent=Os02t0131850-00
Chr02	irgsp1_rep	mRNA	1669461	1671823	.	-	.	ID=Os02t0132100-00;Name=Os02t0132100-00;Locus_id=Os02g0132100;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001045795.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os02t0132100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	1669833	1671823	.	-	0	Parent=Os02t0132100-00
Chr02	irgsp1_rep	CDS	1669461	1669590	.	-	1	Parent=Os02t0132100-00
Chr02	irgsp1_rep	mRNA	1673076	1676637	.	-	.	ID=Os02t0132200-00;Name=Os02t0132200-00;Locus_id=Os02g0132200;Note=Conserved hypothetical protein.;Transcript_evidence=AK370222 (DDBJ);ORF_evidence=NP_001045796.1 (RefSeq);TENOR=Os02t0132200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	1676290	1676637	.	-	0	Parent=Os02t0132200-00
Chr02	irgsp1_rep	CDS	1676132	1676195	.	-	0	Parent=Os02t0132200-00
Chr02	irgsp1_rep	CDS	1674309	1675322	.	-	2	Parent=Os02t0132200-00
Chr02	irgsp1_rep	CDS	1674136	1674198	.	-	2	Parent=Os02t0132200-00
Chr02	irgsp1_rep	CDS	1673835	1674055	.	-	2	Parent=Os02t0132200-00
Chr02	irgsp1_rep	CDS	1673572	1673675	.	-	0	Parent=Os02t0132200-00
Chr02	irgsp1_rep	CDS	1673193	1673307	.	-	1	Parent=Os02t0132200-00
Chr02	irgsp1_rep	three_prime_UTR	1673076	1673192	.	-	.	Parent=Os02t0132200-00
Chr02	irgsp1_rep	mRNA	1680213	1685319	.	+	.	ID=Os02t0132300-01;Name=Os02t0132300-01;Locus_id=Os02g0132300;Oryzabase Gene Symbol Synonym(s)=OsRFPV-6;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPV-6%2C RING-V protein 6;Note=Similar to Erythrocyte membrane protein PFEMP3 (Fragment).;Transcript_evidence=AK070078 (DDBJ%2C Best hit);ORF_evidence=NP_001151550.1 (RefSeq);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-CH-type (IPR011016),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J023045B03;Oryzabase=11805;Expression=AK070078;TENOR=Os02t0132300-01;KEGG=Os02t0132300-01
Chr02	irgsp1_rep	five_prime_UTR	1680213	1680485	.	+	.	Parent=Os02t0132300-01
Chr02	irgsp1_rep	five_prime_UTR	1681448	1681499	.	+	.	Parent=Os02t0132300-01
Chr02	irgsp1_rep	CDS	1681500	1681776	.	+	0	Parent=Os02t0132300-01
Chr02	irgsp1_rep	CDS	1681910	1681995	.	+	2	Parent=Os02t0132300-01
Chr02	irgsp1_rep	CDS	1682117	1682263	.	+	0	Parent=Os02t0132300-01
Chr02	irgsp1_rep	CDS	1682669	1682771	.	+	0	Parent=Os02t0132300-01
Chr02	irgsp1_rep	CDS	1683490	1683602	.	+	2	Parent=Os02t0132300-01
Chr02	irgsp1_rep	CDS	1684259	1684351	.	+	0	Parent=Os02t0132300-01
Chr02	irgsp1_rep	three_prime_UTR	1684352	1685319	.	+	.	Parent=Os02t0132300-01
Chr02	irgsp1_rep	mRNA	1680249	1689438	.	+	.	ID=Os02t0132300-02;Name=Os02t0132300-02;Locus_id=Os02g0132300;Oryzabase Gene Symbol Synonym(s)=OsRFPV-6;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPV-6%2C RING-V protein 6;Note=Similar to Erythrocyte membrane protein PFEMP3 (Fragment).;Transcript_evidence=AK106973 (DDBJ%2C Best hit);ORF_evidence=NP_001151550.1 (RefSeq);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-CH-type (IPR011016),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=002-119-G09;Oryzabase=11805;Expression=AK106973;TENOR=Os02t0132300-02;KEGG=Os02t0132300-02
Chr02	irgsp1_rep	five_prime_UTR	1680249	1680485	.	+	.	Parent=Os02t0132300-02
Chr02	irgsp1_rep	five_prime_UTR	1681448	1681499	.	+	.	Parent=Os02t0132300-02
Chr02	irgsp1_rep	CDS	1681500	1681776	.	+	0	Parent=Os02t0132300-02
Chr02	irgsp1_rep	CDS	1681910	1681995	.	+	2	Parent=Os02t0132300-02
Chr02	irgsp1_rep	CDS	1682117	1682263	.	+	0	Parent=Os02t0132300-02
Chr02	irgsp1_rep	CDS	1682669	1682771	.	+	0	Parent=Os02t0132300-02
Chr02	irgsp1_rep	CDS	1683490	1683602	.	+	2	Parent=Os02t0132300-02
Chr02	irgsp1_rep	CDS	1684259	1684351	.	+	0	Parent=Os02t0132300-02
Chr02	irgsp1_rep	three_prime_UTR	1684352	1684378	.	+	.	Parent=Os02t0132300-02
Chr02	irgsp1_rep	three_prime_UTR	1688019	1688246	.	+	.	Parent=Os02t0132300-02
Chr02	irgsp1_rep	three_prime_UTR	1688952	1689438	.	+	.	Parent=Os02t0132300-02
Chr02	irgsp1_rep	mRNA	1680268	1688422	.	+	.	ID=Os02t0132300-03;Name=Os02t0132300-03;Locus_id=Os02g0132300;Oryzabase Gene Symbol Synonym(s)=OsRFPV-6;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPV-6%2C RING-V protein 6;Note=Similar to Erythrocyte membrane protein PFEMP3 (Fragment).;Transcript_evidence=AK103414 (DDBJ%2C Best hit);ORF_evidence=NP_001151550.1 (RefSeq);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-CH-type (IPR011016),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J033128G16;Oryzabase=11805;Expression=AK103414;TENOR=Os02t0132300-03;KEGG=Os02t0132300-03
Chr02	irgsp1_rep	five_prime_UTR	1680268	1680485	.	+	.	Parent=Os02t0132300-03
Chr02	irgsp1_rep	five_prime_UTR	1681448	1681499	.	+	.	Parent=Os02t0132300-03
Chr02	irgsp1_rep	CDS	1681500	1681776	.	+	0	Parent=Os02t0132300-03
Chr02	irgsp1_rep	CDS	1681910	1681995	.	+	2	Parent=Os02t0132300-03
Chr02	irgsp1_rep	CDS	1682117	1682263	.	+	0	Parent=Os02t0132300-03
Chr02	irgsp1_rep	CDS	1682669	1682771	.	+	0	Parent=Os02t0132300-03
Chr02	irgsp1_rep	CDS	1683490	1683602	.	+	2	Parent=Os02t0132300-03
Chr02	irgsp1_rep	CDS	1684259	1684351	.	+	0	Parent=Os02t0132300-03
Chr02	irgsp1_rep	three_prime_UTR	1684352	1684378	.	+	.	Parent=Os02t0132300-03
Chr02	irgsp1_rep	three_prime_UTR	1688019	1688422	.	+	.	Parent=Os02t0132300-03
Chr02	irgsp1_rep	mRNA	1695640	1697142	.	-	.	ID=Os02t0132500-01;Name=Os02t0132500-01;Locus_id=Os02g0132500;CGSNL Gene Symbol=BZIP14;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 14;Oryzabase Gene Symbol Synonym(s)=OsbZIP14;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 14;Note=Similar to Common plant regulatory factor 7.;Transcript_evidence=AK070887 (DDBJ%2C Best hit);ORF_evidence=F1DK38 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);NIAS_FLcDNA=J023064O22;Oryzabase=10103;Expression=AK070887;TENOR=Os02t0132500-01;KEGG=Os02t0132500-01
Chr02	irgsp1_rep	five_prime_UTR	1696394	1697142	.	-	.	Parent=Os02t0132500-01
Chr02	irgsp1_rep	CDS	1695902	1696393	.	-	0	Parent=Os02t0132500-01
Chr02	irgsp1_rep	three_prime_UTR	1695640	1695901	.	-	.	Parent=Os02t0132500-01
Chr02	irgsp1_rep	mRNA	1709086	1717974	.	-	.	ID=Os02t0132600-01;Name=Os02t0132600-01;Locus_id=Os02g0132600;Note=Conserved hypothetical protein.;Transcript_evidence=AK073010 (DDBJ%2C Best hit);ORF_evidence=Q6Z6J3 (UniProt);NIAS_FLcDNA=J023144A17;TENOR=Os02t0132600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	1717859	1717974	.	-	.	Parent=Os02t0132600-01
Chr02	irgsp1_rep	CDS	1717639	1717858	.	-	0	Parent=Os02t0132600-01
Chr02	irgsp1_rep	CDS	1717497	1717565	.	-	2	Parent=Os02t0132600-01
Chr02	irgsp1_rep	CDS	1716747	1717397	.	-	2	Parent=Os02t0132600-01
Chr02	irgsp1_rep	CDS	1716430	1716609	.	-	2	Parent=Os02t0132600-01
Chr02	irgsp1_rep	CDS	1716200	1716264	.	-	2	Parent=Os02t0132600-01
Chr02	irgsp1_rep	CDS	1715368	1715415	.	-	0	Parent=Os02t0132600-01
Chr02	irgsp1_rep	three_prime_UTR	1715265	1715367	.	-	.	Parent=Os02t0132600-01
Chr02	irgsp1_rep	three_prime_UTR	1714367	1714480	.	-	.	Parent=Os02t0132600-01
Chr02	irgsp1_rep	three_prime_UTR	1713790	1713885	.	-	.	Parent=Os02t0132600-01
Chr02	irgsp1_rep	three_prime_UTR	1713620	1713690	.	-	.	Parent=Os02t0132600-01
Chr02	irgsp1_rep	three_prime_UTR	1713021	1713140	.	-	.	Parent=Os02t0132600-01
Chr02	irgsp1_rep	three_prime_UTR	1712068	1712172	.	-	.	Parent=Os02t0132600-01
Chr02	irgsp1_rep	three_prime_UTR	1711720	1711884	.	-	.	Parent=Os02t0132600-01
Chr02	irgsp1_rep	three_prime_UTR	1711480	1711607	.	-	.	Parent=Os02t0132600-01
Chr02	irgsp1_rep	three_prime_UTR	1711321	1711390	.	-	.	Parent=Os02t0132600-01
Chr02	irgsp1_rep	three_prime_UTR	1710627	1710841	.	-	.	Parent=Os02t0132600-01
Chr02	irgsp1_rep	three_prime_UTR	1710277	1710460	.	-	.	Parent=Os02t0132600-01
Chr02	irgsp1_rep	three_prime_UTR	1709086	1709752	.	-	.	Parent=Os02t0132600-01
Chr02	irgsp1_rep	mRNA	1708916	1716503	.	-	.	ID=Os02t0132600-02;Name=Os02t0132600-02;Locus_id=Os02g0132600;Note=Hypothetical conserved gene.;Transcript_evidence=AK063912 (DDBJ%2C Best hit);ORF_evidence=Q6Z6J3 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=001-123-A08;Expression=AK063912;TENOR=Os02t0132600-02;KEGG=Os02t0132600-02
Chr02	irgsp1_rep	five_prime_UTR	1716503	1716503	.	-	.	Parent=Os02t0132600-02
Chr02	irgsp1_rep	CDS	1716430	1716502	.	-	0	Parent=Os02t0132600-02
Chr02	irgsp1_rep	CDS	1716200	1716264	.	-	2	Parent=Os02t0132600-02
Chr02	irgsp1_rep	CDS	1715265	1715372	.	-	0	Parent=Os02t0132600-02
Chr02	irgsp1_rep	CDS	1714367	1714480	.	-	0	Parent=Os02t0132600-02
Chr02	irgsp1_rep	CDS	1713790	1713885	.	-	0	Parent=Os02t0132600-02
Chr02	irgsp1_rep	CDS	1713620	1713718	.	-	0	Parent=Os02t0132600-02
Chr02	irgsp1_rep	CDS	1713021	1713140	.	-	0	Parent=Os02t0132600-02
Chr02	irgsp1_rep	CDS	1712068	1712172	.	-	0	Parent=Os02t0132600-02
Chr02	irgsp1_rep	CDS	1711720	1711884	.	-	0	Parent=Os02t0132600-02
Chr02	irgsp1_rep	CDS	1711480	1711607	.	-	0	Parent=Os02t0132600-02
Chr02	irgsp1_rep	CDS	1711321	1711390	.	-	1	Parent=Os02t0132600-02
Chr02	irgsp1_rep	CDS	1710627	1710841	.	-	0	Parent=Os02t0132600-02
Chr02	irgsp1_rep	CDS	1710277	1710460	.	-	1	Parent=Os02t0132600-02
Chr02	irgsp1_rep	CDS	1709672	1709752	.	-	0	Parent=Os02t0132600-02
Chr02	irgsp1_rep	three_prime_UTR	1708916	1709671	.	-	.	Parent=Os02t0132600-02
Chr02	irgsp1_rep	mRNA	1733998	1737535	.	+	.	ID=Os02t0132950-01;Name=Os02t0132950-01;Locus_id=Os02g0132950;Note=Hypothetical gene.;Transcript_evidence=AK241678 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065193E18;TENOR=Os02t0132950-01
Chr02	irgsp1_rep	five_prime_UTR	1733998	1735090	.	+	.	Parent=Os02t0132950-01
Chr02	irgsp1_rep	five_prime_UTR	1735219	1735367	.	+	.	Parent=Os02t0132950-01
Chr02	irgsp1_rep	five_prime_UTR	1735458	1735633	.	+	.	Parent=Os02t0132950-01
Chr02	irgsp1_rep	five_prime_UTR	1735719	1737080	.	+	.	Parent=Os02t0132950-01
Chr02	irgsp1_rep	CDS	1737081	1737120	.	+	0	Parent=Os02t0132950-01
Chr02	irgsp1_rep	CDS	1737307	1737535	.	+	2	Parent=Os02t0132950-01
Chr02	irgsp1_rep	mRNA	1734447	1737461	.	-	.	ID=Os02t0133000-00;Name=Os02t0133000-00;Locus_id=Os02g0133000;CGSNL Gene Symbol=CYCT1%3B3;CGSNL Gene Name=CYCLIN-T1-3;Oryzabase Gene Symbol Synonym(s)=CycT1%3B3%2C CycT1%3Bos%3B3%2C Orysa%3BCycT1%3B3;Oryzabase Gene Name Synonym(s)=T-type cyclin 1%3B3;Note=Cyclin-T1-1.;Transcript_evidence=Q0E474 (UniProt);ORF_evidence=Q0E474 (UniProt);GO=Biological Process: regulation of cyclin-dependent protein kinase activity (GO:0000079),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763),Cyclin C/H/T/L (IPR015429);Oryzabase=13277;TENOR=Os02t0133000-00
Chr02	irgsp1_rep	CDS	1737307	1737461	.	-	0	Parent=Os02t0133000-00
Chr02	irgsp1_rep	CDS	1737039	1737120	.	-	1	Parent=Os02t0133000-00
Chr02	irgsp1_rep	CDS	1735719	1735853	.	-	0	Parent=Os02t0133000-00
Chr02	irgsp1_rep	CDS	1735458	1735633	.	-	0	Parent=Os02t0133000-00
Chr02	irgsp1_rep	CDS	1735219	1735367	.	-	1	Parent=Os02t0133000-00
Chr02	irgsp1_rep	CDS	1734447	1735090	.	-	2	Parent=Os02t0133000-00
Chr02	irgsp1_rep	mRNA	1745671	1748201	.	+	.	ID=Os02t0133100-01;Name=Os02t0133100-01;Locus_id=Os02g0133100;Oryzabase Gene Symbol Synonym(s)=OsSNDP4%2C SNDP4;Oryzabase Gene Name Synonym(s)=Sec14-nodulin domain-containing protein 4%2C Sec14-nodulin domain protein 4;Note=Similar to Phosphatidylinositol transfer-like protein III.;Transcript_evidence=AK060180 (DDBJ%2C Best hit);ORF_evidence=Q94FN1 (UniProt);InterPro=Cellular retinaldehyde-binding/triple function%2C C-terminal (IPR001251);NIAS_FLcDNA=001-001-B05;Oryzabase=12288;Expression=AK060180;TENOR=Os02t0133100-01;KEGG=Os02t0133100-01
Chr02	irgsp1_rep	CDS	1745671	1745766	.	+	0	Parent=Os02t0133100-01
Chr02	irgsp1_rep	CDS	1745859	1745936	.	+	0	Parent=Os02t0133100-01
Chr02	irgsp1_rep	CDS	1746023	1746124	.	+	0	Parent=Os02t0133100-01
Chr02	irgsp1_rep	CDS	1746205	1746254	.	+	0	Parent=Os02t0133100-01
Chr02	irgsp1_rep	CDS	1746347	1746446	.	+	1	Parent=Os02t0133100-01
Chr02	irgsp1_rep	CDS	1746550	1746648	.	+	0	Parent=Os02t0133100-01
Chr02	irgsp1_rep	CDS	1746742	1746858	.	+	0	Parent=Os02t0133100-01
Chr02	irgsp1_rep	CDS	1747187	1747313	.	+	0	Parent=Os02t0133100-01
Chr02	irgsp1_rep	CDS	1747396	1747793	.	+	2	Parent=Os02t0133100-01
Chr02	irgsp1_rep	CDS	1747900	1748004	.	+	0	Parent=Os02t0133100-01
Chr02	irgsp1_rep	three_prime_UTR	1748005	1748201	.	+	.	Parent=Os02t0133100-01
Chr02	irgsp1_rep	mRNA	1748459	1753122	.	-	.	ID=Os02t0133200-01;Name=Os02t0133200-01;Locus_id=Os02g0133200;Oryzabase Gene Symbol Synonym(s)=OsSNDP3%2C SNDP3;Oryzabase Gene Name Synonym(s)=Sec14-nodulin domain-containing protein 3%2C Sec14-nodulin domain protein 3;Note=Similar to Phosphatidylinositol transfer-like protein IV.;Transcript_evidence=AK100898 (DDBJ%2C Best hit),AK072646 (DDBJ%2C Best hit);ORF_evidence=NP_568006.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Cellular Component: intracellular (GO:0005622),Molecular Function: transporter activity (GO:0005215);InterPro=Cellular retinaldehyde binding/alpha-tocopherol transport (IPR001071),Cellular retinaldehyde-binding/triple function%2C C-terminal (IPR001251),Cellular retinaldehyde-binding/triple function%2C N-terminal (IPR008273),Phosphatidylinositol transfer protein-like%2C N-terminal (IPR011074);NIAS_FLcDNA=J023131C20,J023129P11;Oryzabase=12287;Expression=AK100898;TENOR=Os02t0133200-01;KEGG=Os02t0133200-01
Chr02	irgsp1_rep	five_prime_UTR	1753051	1753122	.	-	.	Parent=Os02t0133200-01
Chr02	irgsp1_rep	CDS	1752322	1753050	.	-	0	Parent=Os02t0133200-01
Chr02	irgsp1_rep	CDS	1751794	1751871	.	-	0	Parent=Os02t0133200-01
Chr02	irgsp1_rep	CDS	1751323	1751424	.	-	0	Parent=Os02t0133200-01
Chr02	irgsp1_rep	CDS	1751145	1751194	.	-	0	Parent=Os02t0133200-01
Chr02	irgsp1_rep	CDS	1750896	1750989	.	-	1	Parent=Os02t0133200-01
Chr02	irgsp1_rep	CDS	1750636	1750737	.	-	0	Parent=Os02t0133200-01
Chr02	irgsp1_rep	CDS	1750423	1750533	.	-	0	Parent=Os02t0133200-01
Chr02	irgsp1_rep	CDS	1750095	1750215	.	-	0	Parent=Os02t0133200-01
Chr02	irgsp1_rep	CDS	1749453	1749868	.	-	2	Parent=Os02t0133200-01
Chr02	irgsp1_rep	CDS	1748943	1749017	.	-	0	Parent=Os02t0133200-01
Chr02	irgsp1_rep	CDS	1748795	1748815	.	-	0	Parent=Os02t0133200-01
Chr02	irgsp1_rep	three_prime_UTR	1748459	1748794	.	-	.	Parent=Os02t0133200-01
Chr02	irgsp1_rep	mRNA	1754546	1756511	.	-	.	ID=Os02t0133300-01;Name=Os02t0133300-01;Locus_id=Os02g0133300;Oryzabase Gene Symbol Synonym(s)=SMC3;Oryzabase Gene Name Synonym(s)=structural maintenance of Chromosomes protein 3;Note=Similar to SMC3 protein.;Transcript_evidence=AK105135 (DDBJ%2C Best hit);ORF_evidence=Q8GU54 (UniProt);InterPro=RecF/RecN/SMC (IPR003395);NIAS_FLcDNA=001-102-A05;Oryzabase=13981;Expression=AK105135;TENOR=Os02t0133300-01;KEGG=Os02t0133300-01
Chr02	irgsp1_rep	five_prime_UTR	1756511	1756511	.	-	.	Parent=Os02t0133300-01
Chr02	irgsp1_rep	CDS	1756343	1756510	.	-	0	Parent=Os02t0133300-01
Chr02	irgsp1_rep	CDS	1756110	1756256	.	-	0	Parent=Os02t0133300-01
Chr02	irgsp1_rep	CDS	1755558	1755653	.	-	0	Parent=Os02t0133300-01
Chr02	irgsp1_rep	CDS	1755186	1755360	.	-	0	Parent=Os02t0133300-01
Chr02	irgsp1_rep	CDS	1754861	1755051	.	-	2	Parent=Os02t0133300-01
Chr02	irgsp1_rep	three_prime_UTR	1754546	1754860	.	-	.	Parent=Os02t0133300-01
Chr02	irgsp1_rep	mRNA	1766344	1773708	.	-	.	ID=Os02t0133400-00;Name=Os02t0133400-00;Locus_id=Os02g0133400;Oryzabase Gene Symbol Synonym(s)=sudA;Oryzabase Gene Name Synonym(s)=SMC3 homolog%2C Chromosome segregation protein sudA;Note=Similar to SMC3 protein.;Transcript_evidence=AK368207 (DDBJ);ORF_evidence=Q8GU54 (UniProt);Oryzabase=20423;TENOR=Os02t0133400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	1773463	1773708	.	-	0	Parent=Os02t0133400-00
Chr02	irgsp1_rep	CDS	1773199	1773382	.	-	0	Parent=Os02t0133400-00
Chr02	irgsp1_rep	CDS	1773029	1773099	.	-	2	Parent=Os02t0133400-00
Chr02	irgsp1_rep	CDS	1772801	1772949	.	-	0	Parent=Os02t0133400-00
Chr02	irgsp1_rep	CDS	1767783	1767804	.	-	1	Parent=Os02t0133400-00
Chr02	irgsp1_rep	three_prime_UTR	1767635	1767782	.	-	.	Parent=Os02t0133400-00
Chr02	irgsp1_rep	three_prime_UTR	1767414	1767560	.	-	.	Parent=Os02t0133400-00
Chr02	irgsp1_rep	three_prime_UTR	1766709	1766814	.	-	.	Parent=Os02t0133400-00
Chr02	irgsp1_rep	three_prime_UTR	1766344	1766542	.	-	.	Parent=Os02t0133400-00
Chr02	irgsp1_rep	mRNA	1784613	1788028	.	+	.	ID=Os02t0133800-01;Name=Os02t0133800-01;Locus_id=Os02g0133800;Oryzabase Gene Symbol Synonym(s)=OsPAF1;Oryzabase Gene Name Synonym(s)=C2 subunit of the 20S proteasome%2C 20S proteasome C2 subunit%2C 20S proteasome alpha6 subunit;Note=Proteasome subunit alpha type 1 (EC 3.4.25.1) (20S proteasome alpha subunit F) (20S proteasome subunit alpha-6) (Proteasome component C2).;Transcript_evidence=AK103646 (DDBJ%2C Best hit),AK109376 (DDBJ%2C Best hit);ORF_evidence=B8AHG2 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603),Cellular Component: proteasome core complex (GO:0005839),Cellular Component: proteasome core complex%2C alpha-subunit complex (GO:0019773),Molecular Function: endopeptidase activity (GO:0004175),Molecular Function: threonine-type endopeptidase activity (GO:0004298);InterPro=Proteasome%2C alpha-subunit%2C conserved site (IPR000426),Proteasome%2C subunit alpha/beta (IPR001353),Proteasome A-type subunit (IPR023332);NIAS_FLcDNA=J033135B19,006-209-D06;Oryzabase=14327;Expression=AK103646;TENOR=Os02t0133800-01;KEGG=Os02t0133800-01 (EC:3.4.25.1)
Chr02	irgsp1_rep	five_prime_UTR	1784613	1784705	.	+	.	Parent=Os02t0133800-01
Chr02	irgsp1_rep	CDS	1784706	1785056	.	+	0	Parent=Os02t0133800-01
Chr02	irgsp1_rep	CDS	1787395	1787856	.	+	0	Parent=Os02t0133800-01
Chr02	irgsp1_rep	three_prime_UTR	1787857	1788028	.	+	.	Parent=Os02t0133800-01
Chr02	irgsp1_rep	mRNA	1787725	1788030	.	+	.	ID=Os02t0133800-02;Name=Os02t0133800-02;Locus_id=Os02g0133800;Oryzabase Gene Symbol Synonym(s)=OsPAF1;Oryzabase Gene Name Synonym(s)=C2 subunit of the 20S proteasome%2C 20S proteasome C2 subunit%2C 20S proteasome alpha6 subunit;Note=Non-protein coding transcript.;Transcript_evidence=AK059589 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-030-C09;Oryzabase=14327;TENOR=Os02t0133800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	exon	1787725	1788030	.	+	.	Parent=Os02t0133800-02
Chr02	irgsp1_rep	mRNA	1788746	1792353	.	+	.	ID=Os02t0133900-01;Name=Os02t0133900-01;Locus_id=Os02g0133900;Note=Protein of unknown function DUF829%2C eukaryotic family protein.;Transcript_evidence=AK107180 (DDBJ%2C Best hit);ORF_evidence=NP_001130250.1 (RefSeq);InterPro=Protein of unknown function DUF829%2C TMEM53 (IPR008547);NIAS_FLcDNA=002-124-H02;Expression=AK107180;TENOR=Os02t0133900-01;KEGG=Os02t0133900-01
Chr02	irgsp1_rep	five_prime_UTR	1788746	1788787	.	+	.	Parent=Os02t0133900-01
Chr02	irgsp1_rep	CDS	1788788	1789359	.	+	0	Parent=Os02t0133900-01
Chr02	irgsp1_rep	CDS	1790266	1790368	.	+	1	Parent=Os02t0133900-01
Chr02	irgsp1_rep	CDS	1790595	1790803	.	+	0	Parent=Os02t0133900-01
Chr02	irgsp1_rep	CDS	1791924	1792182	.	+	1	Parent=Os02t0133900-01
Chr02	irgsp1_rep	three_prime_UTR	1792183	1792353	.	+	.	Parent=Os02t0133900-01
Chr02	irgsp1_rep	mRNA	1793875	1796979	.	+	.	ID=Os02t0134000-00;Name=Os02t0134000-00;Locus_id=Os02g0134000;Note=Similar to bifunctional coenzyme A synthase.;Transcript_evidence=AK355133 (DDBJ);ORF_evidence=NP_001147323.1 (RefSeq);TENOR=Os02t0134000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	1793875	1793943	.	+	.	Parent=Os02t0134000-00
Chr02	irgsp1_rep	five_prime_UTR	1794233	1794266	.	+	.	Parent=Os02t0134000-00
Chr02	irgsp1_rep	CDS	1794267	1794308	.	+	0	Parent=Os02t0134000-00
Chr02	irgsp1_rep	CDS	1795778	1795837	.	+	0	Parent=Os02t0134000-00
Chr02	irgsp1_rep	CDS	1796327	1796421	.	+	0	Parent=Os02t0134000-00
Chr02	irgsp1_rep	CDS	1796616	1796685	.	+	1	Parent=Os02t0134000-00
Chr02	irgsp1_rep	CDS	1796777	1796926	.	+	0	Parent=Os02t0134000-00
Chr02	irgsp1_rep	three_prime_UTR	1796927	1796979	.	+	.	Parent=Os02t0134000-00
Chr02	irgsp1_rep	mRNA	1796881	1798322	.	-	.	ID=Os02t0134100-01;Name=Os02t0134100-01;Locus_id=Os02g0134100;Note=Hypothetical gene.;Transcript_evidence=AK069055 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023004E17;TENOR=Os02t0134100-01
Chr02	irgsp1_rep	five_prime_UTR	1797228	1798322	.	-	.	Parent=Os02t0134100-01
Chr02	irgsp1_rep	CDS	1796881	1797227	.	-	0	Parent=Os02t0134100-01
Chr02	irgsp1_rep	mRNA	1799750	1800811	.	-	.	ID=Os02t0134200-01;Name=Os02t0134200-01;Locus_id=Os02g0134200;RAP-DB Gene Symbol Synonym(s)=OsSGL;RAP-DB Gene Name Synonym(s)=STRESS_tolerance and GRAIN_LENGTH;CGSNL Gene Symbol=SGL;CGSNL Gene Name=STRESS_TOLERANCE AND GRAIN_LENGTH;Oryzabase Gene Symbol Synonym(s)=OsSGL;Oryzabase Gene Name Synonym(s)=STRESS_tolerance and GRAIN_LENGTH;Note=DUF1645 family protein%2C Regulation of stress-tolerance and grain length;Transcript_evidence=AK108331;ORF_evidence=Q6Z6I0;InterPro=Protein of unknown function DUF1645%2C plant (IPR012442);NIAS_FLcDNA=002-142-A01;Manual Curation=December 12%2C 2016;Literature_PMID=27917884;Oryzabase=21580;Expression=AK108331;TENOR=Os02t0134200-01;KEGG=Os02t0134200-01
Chr02	irgsp1_rep	five_prime_UTR	1800707	1800811	.	-	.	Parent=Os02t0134200-01
Chr02	irgsp1_rep	CDS	1799939	1800706	.	-	0	Parent=Os02t0134200-01
Chr02	irgsp1_rep	three_prime_UTR	1799750	1799938	.	-	.	Parent=Os02t0134200-01
Chr02	irgsp1_rep	mRNA	1816334	1819090	.	-	.	ID=Os02t0134300-01;Name=Os02t0134300-01;Locus_id=Os02g0134300;Oryzabase Gene Symbol Synonym(s)=OsTEF1;Oryzabase Gene Name Synonym(s)=Transcription Elongation Factor 1;Note=Protein of unknown function DUF701%2C zinc-binding putative family protein.;Transcript_evidence=AK120292 (DDBJ%2C Best hit);ORF_evidence=B6SX26 (UniProt);InterPro=Protein of unknown function DUF701%2C zinc-binding putative (IPR007808);NIAS_FLcDNA=J013050K04;Oryzabase=10384;Expression=AK120292;TENOR=Os02t0134300-01;KEGG=Os02t0134300-01
Chr02	irgsp1_rep	five_prime_UTR	1819014	1819090	.	-	.	Parent=Os02t0134300-01
Chr02	irgsp1_rep	five_prime_UTR	1818064	1818086	.	-	.	Parent=Os02t0134300-01
Chr02	irgsp1_rep	CDS	1817951	1818063	.	-	0	Parent=Os02t0134300-01
Chr02	irgsp1_rep	CDS	1817771	1817841	.	-	1	Parent=Os02t0134300-01
Chr02	irgsp1_rep	CDS	1817002	1817023	.	-	2	Parent=Os02t0134300-01
Chr02	irgsp1_rep	CDS	1816791	1816902	.	-	1	Parent=Os02t0134300-01
Chr02	irgsp1_rep	three_prime_UTR	1816334	1816790	.	-	.	Parent=Os02t0134300-01
Chr02	irgsp1_rep	mRNA	1821869	1826372	.	+	.	ID=Os02t0134400-01;Name=Os02t0134400-01;Locus_id=Os02g0134400;Oryzabase Gene Symbol Synonym(s)=OsLASPO;Oryzabase Gene Name Synonym(s)=L-aspartate oxidase;Note=Fumarate reductase/succinate dehydrogenase flavoprotein%2C C-terminal domain containing protein.;Transcript_evidence=AK072394 (DDBJ%2C Best hit);ORF_evidence=B6U0K6 (UniProt);GO=Biological Process: NAD biosynthetic process (GO:0009435),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: cytoplasm (GO:0005737),Molecular Function: L-aspartate oxidase activity (GO:0008734),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Fumarate reductase/succinate dehydrogenase flavoprotein%2C N-terminal (IPR003953),Fumarate reductase/succinate dehydrogenase flavoprotein%2C C-terminal (IPR004112),L-aspartate oxidase (IPR005288),FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR013027),Fumarate reductase/succinate dehydrogenase flavoprotein-like%2C C-terminal (IPR015939);NIAS_FLcDNA=J023079P07;Oryzabase=12479;Expression=AK072394;TENOR=Os02t0134400-01;KEGG=Os02t0134400-01 (EC:1.4.3.16)
Chr02	irgsp1_rep	five_prime_UTR	1821869	1822020	.	+	.	Parent=Os02t0134400-01
Chr02	irgsp1_rep	five_prime_UTR	1822362	1822369	.	+	.	Parent=Os02t0134400-01
Chr02	irgsp1_rep	CDS	1822370	1822503	.	+	0	Parent=Os02t0134400-01
Chr02	irgsp1_rep	CDS	1822913	1823258	.	+	1	Parent=Os02t0134400-01
Chr02	irgsp1_rep	CDS	1823393	1823635	.	+	0	Parent=Os02t0134400-01
Chr02	irgsp1_rep	CDS	1824212	1824268	.	+	0	Parent=Os02t0134400-01
Chr02	irgsp1_rep	CDS	1824407	1824487	.	+	0	Parent=Os02t0134400-01
Chr02	irgsp1_rep	CDS	1824725	1824786	.	+	0	Parent=Os02t0134400-01
Chr02	irgsp1_rep	CDS	1824990	1826004	.	+	1	Parent=Os02t0134400-01
Chr02	irgsp1_rep	three_prime_UTR	1826005	1826372	.	+	.	Parent=Os02t0134400-01
Chr02	irgsp1_rep	mRNA	1826778	1829347	.	-	.	ID=Os02t0134500-01;Name=Os02t0134500-01;Locus_id=Os02g0134500;Note=Similar to UPF0497 membrane protein Sb04g002820.;Transcript_evidence=AK108836 (DDBJ%2C Best hit);ORF_evidence=C5XTX2 (UniProt);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);NIAS_FLcDNA=002-151-G10;TENOR=Os02t0134500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	1829221	1829347	.	-	.	Parent=Os02t0134500-01
Chr02	irgsp1_rep	CDS	1829131	1829220	.	-	0	Parent=Os02t0134500-01
Chr02	irgsp1_rep	CDS	1828623	1829032	.	-	0	Parent=Os02t0134500-01
Chr02	irgsp1_rep	CDS	1828396	1828531	.	-	1	Parent=Os02t0134500-01
Chr02	irgsp1_rep	CDS	1826950	1827141	.	-	0	Parent=Os02t0134500-01
Chr02	irgsp1_rep	three_prime_UTR	1826778	1826949	.	-	.	Parent=Os02t0134500-01
Chr02	irgsp1_rep	mRNA	1838028	1838864	.	-	.	ID=Os02t0134700-00;Name=Os02t0134700-00;Locus_id=Os02g0134700;CGSNL Gene Symbol=THI23;CGSNL Gene Name=THIONIN 23;Oryzabase Gene Symbol Synonym(s)=OsTHI23%2C OsTHION23%2C THION23;Oryzabase Gene Name Synonym(s)=Thionin 23;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6Z834 (UniProt);Oryzabase=23352;TENOR=Os02t0134700-00;KEGG=Os02t0134700-00
Chr02	irgsp1_rep	CDS	1838543	1838864	.	-	0	Parent=Os02t0134700-00
Chr02	irgsp1_rep	CDS	1838028	1838098	.	-	2	Parent=Os02t0134700-00
Chr02	irgsp1_rep	mRNA	1848217	1848878	.	+	.	ID=Os02t0135000-01;Name=Os02t0135000-01;Locus_id=Os02g0135000;Note=Conserved hypothetical protein.;Transcript_evidence=AK069693 (DDBJ%2C Best hit);ORF_evidence=A2X0L9 (UniProt);NIAS_FLcDNA=J023028F11;Expression=AK069693;TENOR=Os02t0135000-01;KEGG=Os02t0135000-01
Chr02	irgsp1_rep	five_prime_UTR	1848217	1848285	.	+	.	Parent=Os02t0135000-01
Chr02	irgsp1_rep	CDS	1848286	1848561	.	+	0	Parent=Os02t0135000-01
Chr02	irgsp1_rep	three_prime_UTR	1848562	1848878	.	+	.	Parent=Os02t0135000-01
Chr02	irgsp1_rep	mRNA	1850981	1858243	.	-	.	ID=Os02t0135200-00;Name=Os02t0135200-00;Locus_id=Os02g0135200;Oryzabase Gene Symbol Synonym(s)=OsMPK13%2C OsMAPK2%2C OsBIMK2%2C BIMK2%2C MPK13%2C MAPK2;Oryzabase Gene Name Synonym(s)=Mitogen-activated protein kinase13%2C BTH-Induced MAP Kinase 2%2C benzothiadiazole-induced MAP kinase 2;Note=Similar to Mitogen-activated protein kinase 13.;Transcript_evidence=CT836561 (DDBJ%2C Best hit);ORF_evidence=Q0E459 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: MAP kinase activity (GO:0004707),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),MAP kinase%2C conserved site (IPR003527),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=9261;TENOR=Os02t0135200-00;KEGG=Os02t0135200-00 (EC:2.7.11.24)
Chr02	irgsp1_rep	five_prime_UTR	1858134	1858243	.	-	.	Parent=Os02t0135200-00
Chr02	irgsp1_rep	five_prime_UTR	1854606	1854617	.	-	.	Parent=Os02t0135200-00
Chr02	irgsp1_rep	CDS	1854209	1854605	.	-	0	Parent=Os02t0135200-00
Chr02	irgsp1_rep	CDS	1853946	1854073	.	-	2	Parent=Os02t0135200-00
Chr02	irgsp1_rep	CDS	1853637	1853867	.	-	0	Parent=Os02t0135200-00
Chr02	irgsp1_rep	three_prime_UTR	1852848	1853636	.	-	.	Parent=Os02t0135200-00
Chr02	irgsp1_rep	three_prime_UTR	1852455	1852592	.	-	.	Parent=Os02t0135200-00
Chr02	irgsp1_rep	three_prime_UTR	1852291	1852371	.	-	.	Parent=Os02t0135200-00
Chr02	irgsp1_rep	three_prime_UTR	1851946	1852047	.	-	.	Parent=Os02t0135200-00
Chr02	irgsp1_rep	three_prime_UTR	1851525	1851819	.	-	.	Parent=Os02t0135200-00
Chr02	irgsp1_rep	three_prime_UTR	1850981	1851412	.	-	.	Parent=Os02t0135200-00
Chr02	irgsp1_rep	mRNA	1852452	1854619	.	+	.	ID=Os02t0135250-00;Name=Os02t0135250-00;Locus_id=Os02g0135250;Note=Hypothetical protein.;Transcript_evidence=tplb0059e09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0135250-00
Chr02	irgsp1_rep	five_prime_UTR	1852452	1852597	.	+	.	Parent=Os02t0135250-00
Chr02	irgsp1_rep	five_prime_UTR	1852856	1852965	.	+	.	Parent=Os02t0135250-00
Chr02	irgsp1_rep	CDS	1852966	1853011	.	+	0	Parent=Os02t0135250-00
Chr02	irgsp1_rep	CDS	1853375	1853510	.	+	2	Parent=Os02t0135250-00
Chr02	irgsp1_rep	CDS	1853803	1853853	.	+	1	Parent=Os02t0135250-00
Chr02	irgsp1_rep	CDS	1853931	1853937	.	+	1	Parent=Os02t0135250-00
Chr02	irgsp1_rep	three_prime_UTR	1853938	1854053	.	+	.	Parent=Os02t0135250-00
Chr02	irgsp1_rep	three_prime_UTR	1854189	1854619	.	+	.	Parent=Os02t0135250-00
Chr02	irgsp1_rep	mRNA	1860177	1864482	.	-	.	ID=Os02t0135300-00;Name=Os02t0135300-00;Locus_id=Os02g0135300;Oryzabase Gene Symbol Synonym(s)=Ores%3BWee1%2C OsWEE1%2C WEE1;Oryzabase Gene Name Synonym(s)=protein kinase Wee1;Note=Similar to Wee1-like protein kinase.;Transcript_evidence=AK372043 (DDBJ);ORF_evidence=Q6Z829 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=13321;TENOR=Os02t0135300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	1864474	1864482	.	-	.	Parent=Os02t0135300-00
Chr02	irgsp1_rep	CDS	1864112	1864473	.	-	0	Parent=Os02t0135300-00
Chr02	irgsp1_rep	CDS	1863946	1864006	.	-	1	Parent=Os02t0135300-00
Chr02	irgsp1_rep	CDS	1863754	1863817	.	-	0	Parent=Os02t0135300-00
Chr02	irgsp1_rep	CDS	1863410	1863670	.	-	2	Parent=Os02t0135300-00
Chr02	irgsp1_rep	CDS	1863217	1863281	.	-	2	Parent=Os02t0135300-00
Chr02	irgsp1_rep	CDS	1863010	1863119	.	-	0	Parent=Os02t0135300-00
Chr02	irgsp1_rep	CDS	1862885	1862925	.	-	1	Parent=Os02t0135300-00
Chr02	irgsp1_rep	CDS	1862660	1862805	.	-	2	Parent=Os02t0135300-00
Chr02	irgsp1_rep	CDS	1861536	1861889	.	-	0	Parent=Os02t0135300-00
Chr02	irgsp1_rep	CDS	1860410	1860508	.	-	0	Parent=Os02t0135300-00
Chr02	irgsp1_rep	three_prime_UTR	1860177	1860409	.	-	.	Parent=Os02t0135300-00
Chr02	irgsp1_rep	mRNA	1872692	1874755	.	+	.	ID=Os02t0135500-01;Name=Os02t0135500-01;Locus_id=Os02g0135500;Note=Similar to glycosyltransferase.;Transcript_evidence=AK119583 (DDBJ%2C Best hit);ORF_evidence=NP_001147068.1 (RefSeq);NIAS_FLcDNA=002-117-C05;Oryzabase=15238;Expression=AK119583;TENOR=Os02t0135500-01;KEGG=Os02t0135500-01
Chr02	irgsp1_rep	five_prime_UTR	1872692	1872873	.	+	.	Parent=Os02t0135500-01
Chr02	irgsp1_rep	CDS	1872874	1873000	.	+	0	Parent=Os02t0135500-01
Chr02	irgsp1_rep	CDS	1873100	1873392	.	+	2	Parent=Os02t0135500-01
Chr02	irgsp1_rep	three_prime_UTR	1873393	1874755	.	+	.	Parent=Os02t0135500-01
Chr02	irgsp1_rep	mRNA	1872695	1874820	.	+	.	ID=Os02t0135500-02;Name=Os02t0135500-02;Locus_id=Os02g0135500;Note=Glycosyltransferase AER61%2C uncharacterized domain containing protein.;Transcript_evidence=AK065605 (DDBJ%2C Best hit);ORF_evidence=NP_001147068.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyltransferase AER61%2C uncharacterised (IPR007657);NIAS_FLcDNA=J013033I23;Oryzabase=15238;Expression=AK065605;TENOR=Os02t0135500-02;KEGG=Os02t0135500-02
Chr02	irgsp1_rep	five_prime_UTR	1872695	1872873	.	+	.	Parent=Os02t0135500-02
Chr02	irgsp1_rep	CDS	1872874	1873000	.	+	0	Parent=Os02t0135500-02
Chr02	irgsp1_rep	CDS	1873100	1873183	.	+	2	Parent=Os02t0135500-02
Chr02	irgsp1_rep	CDS	1873258	1874504	.	+	2	Parent=Os02t0135500-02
Chr02	irgsp1_rep	three_prime_UTR	1874505	1874820	.	+	.	Parent=Os02t0135500-02
Chr02	irgsp1_rep	mRNA	1879189	1882475	.	-	.	ID=Os02t0135600-01;Name=Os02t0135600-01;Locus_id=Os02g0135600;Note=Conserved hypothetical protein.;Transcript_evidence=AK069843 (DDBJ%2C Best hit);ORF_evidence=A2X0M4 (UniProt);NIAS_FLcDNA=J023034H09;Expression=AK069843;TENOR=Os02t0135600-01;KEGG=Os02t0135600-01
Chr02	irgsp1_rep	five_prime_UTR	1882465	1882475	.	-	.	Parent=Os02t0135600-01
Chr02	irgsp1_rep	CDS	1882287	1882464	.	-	0	Parent=Os02t0135600-01
Chr02	irgsp1_rep	CDS	1882102	1882181	.	-	2	Parent=Os02t0135600-01
Chr02	irgsp1_rep	CDS	1881939	1882009	.	-	0	Parent=Os02t0135600-01
Chr02	irgsp1_rep	CDS	1881343	1881849	.	-	1	Parent=Os02t0135600-01
Chr02	irgsp1_rep	CDS	1880761	1880851	.	-	1	Parent=Os02t0135600-01
Chr02	irgsp1_rep	CDS	1879519	1879605	.	-	0	Parent=Os02t0135600-01
Chr02	irgsp1_rep	three_prime_UTR	1879189	1879518	.	-	.	Parent=Os02t0135600-01
Chr02	irgsp1_rep	mRNA	1882715	1888893	.	+	.	ID=Os02t0135700-01;Name=Os02t0135700-01;Locus_id=Os02g0135700;Note=DNA polymerase V family protein.;Transcript_evidence=AK100570 (DDBJ%2C Best hit);ORF_evidence=B9F2L5 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed DNA polymerase activity (GO:0003887),Molecular Function: binding (GO:0005488);InterPro=DNA polymerase V (IPR007015),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023105B17;Expression=AK100570;TENOR=Os02t0135700-01;KEGG=Os02t0135700-01 (EC:2.7.7.7)
Chr02	irgsp1_rep	five_prime_UTR	1882715	1882843	.	+	.	Parent=Os02t0135700-01
Chr02	irgsp1_rep	CDS	1882844	1883413	.	+	0	Parent=Os02t0135700-01
Chr02	irgsp1_rep	CDS	1883519	1883644	.	+	0	Parent=Os02t0135700-01
Chr02	irgsp1_rep	CDS	1883733	1883930	.	+	0	Parent=Os02t0135700-01
Chr02	irgsp1_rep	CDS	1884442	1884666	.	+	0	Parent=Os02t0135700-01
Chr02	irgsp1_rep	CDS	1884844	1885989	.	+	0	Parent=Os02t0135700-01
Chr02	irgsp1_rep	CDS	1886480	1886855	.	+	0	Parent=Os02t0135700-01
Chr02	irgsp1_rep	CDS	1887206	1887709	.	+	2	Parent=Os02t0135700-01
Chr02	irgsp1_rep	CDS	1887949	1888721	.	+	2	Parent=Os02t0135700-01
Chr02	irgsp1_rep	three_prime_UTR	1888722	1888893	.	+	.	Parent=Os02t0135700-01
Chr02	irgsp1_rep	mRNA	1887318	1888893	.	+	.	ID=Os02t0135700-02;Name=Os02t0135700-02;Locus_id=Os02g0135700;Note=Hypothetical conserved gene.;Transcript_evidence=AK059533 (DDBJ%2C Best hit);ORF_evidence=B9F2L5 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed DNA polymerase activity (GO:0003887);InterPro=DNA polymerase V (IPR007015);NIAS_FLcDNA=001-029-D10;Expression=AK059533;TENOR=Os02t0135700-02;KEGG=Os02t0135700-02 (EC:2.7.7.7)
Chr02	irgsp1_rep	five_prime_UTR	1887318	1887318	.	+	.	Parent=Os02t0135700-02
Chr02	irgsp1_rep	CDS	1887319	1887709	.	+	0	Parent=Os02t0135700-02
Chr02	irgsp1_rep	CDS	1887949	1888721	.	+	2	Parent=Os02t0135700-02
Chr02	irgsp1_rep	three_prime_UTR	1888722	1888893	.	+	.	Parent=Os02t0135700-02
Chr02	irgsp1_rep	mRNA	1902990	1904987	.	+	.	ID=Os02t0135800-01;Name=Os02t0135800-01;Locus_id=Os02g0135800;Oryzabase Gene Symbol Synonym(s)=OsWD40-36;Note=Similar to Sec13-like protein (Fragment).;Transcript_evidence=AK112028 (DDBJ%2C Best hit);ORF_evidence=Q8W403 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=001-038-G01;Oryzabase=10717;Expression=AK112028;TENOR=Os02t0135800-01;KEGG=Os02t0135800-01
Chr02	irgsp1_rep	five_prime_UTR	1902990	1903197	.	+	.	Parent=Os02t0135800-01
Chr02	irgsp1_rep	five_prime_UTR	1903800	1903868	.	+	.	Parent=Os02t0135800-01
Chr02	irgsp1_rep	CDS	1903869	1904786	.	+	0	Parent=Os02t0135800-01
Chr02	irgsp1_rep	three_prime_UTR	1904787	1904987	.	+	.	Parent=Os02t0135800-01
Chr02	irgsp1_rep	mRNA	1903004	1905124	.	+	.	ID=Os02t0135800-02;Name=Os02t0135800-02;Locus_id=Os02g0135800;Oryzabase Gene Symbol Synonym(s)=OsWD40-36;Note=Similar to Sec13-like protein (Fragment).;Transcript_evidence=AK111732 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J023039H16;Oryzabase=10717;Expression=AK111732;TENOR=Os02t0135800-02;KEGG=Os02t0135800-02
Chr02	irgsp1_rep	five_prime_UTR	1903004	1903192	.	+	.	Parent=Os02t0135800-02
Chr02	irgsp1_rep	five_prime_UTR	1903800	1903868	.	+	.	Parent=Os02t0135800-02
Chr02	irgsp1_rep	CDS	1903869	1904786	.	+	0	Parent=Os02t0135800-02
Chr02	irgsp1_rep	three_prime_UTR	1904787	1905124	.	+	.	Parent=Os02t0135800-02
Chr02	irgsp1_rep	mRNA	1904065	1905035	.	+	.	ID=Os02t0135800-03;Name=Os02t0135800-03;Locus_id=Os02g0135800;Oryzabase Gene Symbol Synonym(s)=OsWD40-36;Note=Similar to Sec13p.;Transcript_evidence=AK111559 (DDBJ%2C Best hit);ORF_evidence=Q8W403 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J013067B03;Oryzabase=10717;Expression=AK111559;TENOR=Os02t0135800-03;KEGG=Os02t0135800-03
Chr02	irgsp1_rep	five_prime_UTR	1904065	1904066	.	+	.	Parent=Os02t0135800-03
Chr02	irgsp1_rep	CDS	1904067	1904786	.	+	0	Parent=Os02t0135800-03
Chr02	irgsp1_rep	three_prime_UTR	1904787	1905035	.	+	.	Parent=Os02t0135800-03
Chr02	irgsp1_rep	mRNA	1907249	1907863	.	+	.	ID=Os02t0135850-00;Name=Os02t0135850-00;Locus_id=Os02g0135850;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9F2L6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin system component Cue (IPR003892),UBA-like (IPR009060),Ataxin-2%2C C-terminal (IPR009818);TENOR=Os02t0135850-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	1907249	1907665	.	+	0	Parent=Os02t0135850-00
Chr02	irgsp1_rep	CDS	1907816	1907863	.	+	0	Parent=Os02t0135850-00
Chr02	irgsp1_rep	mRNA	1909010	1912780	.	+	.	ID=Os02t0135900-01;Name=Os02t0135900-01;Locus_id=Os02g0135900;RAP-DB Gene Symbol Synonym(s)=OsGBP;RAP-DB Gene Name Synonym(s)=GBSS-BINDING PROTEIN;CGSNL Gene Symbol=GBP;CGSNL Gene Name=GBSS-BINDING PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsGBP;Note=Granule-bound starch synthase (GBSS)-binding protein%2C CBM48 domain-containing protein%2C Mediation of the localization of GBSSs to starch granules during amylose biosynthesis;Transcript_evidence=AK072017;ORF_evidence=Q6Z0Y8;InterPro=Immunoglobulin-like fold (IPR013783),Immunoglobulin E-set (IPR014756),AMP-activated protein kinase%2C glycogen-binding domain (IPR032640);NIAS_FLcDNA=J013104N20;Manual Curation=August 30%2C 2019;Literature_PMID=31449354;Oryzabase=23299;Expression=AK072017;TENOR=Os02t0135900-01;KEGG=Os02t0135900-01;Subcellular location=chloroplast (GO:0009507)
Chr02	irgsp1_rep	five_prime_UTR	1909010	1909332	.	+	.	Parent=Os02t0135900-01
Chr02	irgsp1_rep	five_prime_UTR	1909508	1909517	.	+	.	Parent=Os02t0135900-01
Chr02	irgsp1_rep	CDS	1909518	1909546	.	+	0	Parent=Os02t0135900-01
Chr02	irgsp1_rep	CDS	1909791	1910112	.	+	1	Parent=Os02t0135900-01
Chr02	irgsp1_rep	CDS	1910803	1910892	.	+	0	Parent=Os02t0135900-01
Chr02	irgsp1_rep	CDS	1911541	1911609	.	+	0	Parent=Os02t0135900-01
Chr02	irgsp1_rep	CDS	1911969	1912074	.	+	0	Parent=Os02t0135900-01
Chr02	irgsp1_rep	CDS	1912146	1912234	.	+	2	Parent=Os02t0135900-01
Chr02	irgsp1_rep	CDS	1912349	1912461	.	+	0	Parent=Os02t0135900-01
Chr02	irgsp1_rep	CDS	1912555	1912657	.	+	1	Parent=Os02t0135900-01
Chr02	irgsp1_rep	three_prime_UTR	1912658	1912780	.	+	.	Parent=Os02t0135900-01
Chr02	irgsp1_rep	mRNA	1912010	1912796	.	+	.	ID=Os02t0135900-02;Name=Os02t0135900-02;Locus_id=Os02g0135900;CGSNL Gene Symbol=GBP;CGSNL Gene Name=GBSS-BINDING PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsGBP;Note=Similar to predicted protein.;Transcript_evidence=AK103955 (DDBJ%2C Best hit);ORF_evidence=NP_568573.2 (RefSeq);NIAS_FLcDNA=001-014-H08;Oryzabase=23299;Expression=AK103955;TENOR=Os02t0135900-02;KEGG=Os02t0135900-02
Chr02	irgsp1_rep	five_prime_UTR	1912010	1912010	.	+	.	Parent=Os02t0135900-02
Chr02	irgsp1_rep	CDS	1912011	1912074	.	+	0	Parent=Os02t0135900-02
Chr02	irgsp1_rep	CDS	1912146	1912234	.	+	2	Parent=Os02t0135900-02
Chr02	irgsp1_rep	CDS	1912349	1912461	.	+	0	Parent=Os02t0135900-02
Chr02	irgsp1_rep	CDS	1912555	1912657	.	+	1	Parent=Os02t0135900-02
Chr02	irgsp1_rep	three_prime_UTR	1912658	1912796	.	+	.	Parent=Os02t0135900-02
Chr02	irgsp1_rep	mRNA	1912311	1912658	.	-	.	ID=Os02t0135950-00;Name=Os02t0135950-00;Locus_id=Os02g0135950;Note=Non-protein coding transcript.;Transcript_evidence=BT016931 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0135950-00
Chr02	irgsp1_rep	exon	1912552	1912658	.	-	.	Parent=Os02t0135950-00
Chr02	irgsp1_rep	exon	1912311	1912458	.	-	.	Parent=Os02t0135950-00
Chr02	irgsp1_rep	mRNA	1913422	1916137	.	-	.	ID=Os02t0136000-00;Name=Os02t0136000-00;Locus_id=Os02g0136000;CGSNL Gene Symbol=NLP6;CGSNL Gene Name=NIN-LIKE PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsNLP6%2C NLP6.1;Oryzabase Gene Name Synonym(s)=NLP transcription factor 6%2C NODULE INCEPTION-like protein 6;Note=Phox/Bem1p domain containing protein.;Transcript_evidence=AK364314 (DDBJ);ORF_evidence=A2X0M8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Phox/Bem1p (IPR000270),Plant regulator RWP-RK (IPR003035);Oryzabase=23714;TENOR=Os02t0136000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	1916042	1916137	.	-	.	Parent=Os02t0136000-00
Chr02	irgsp1_rep	CDS	1915975	1916041	.	-	0	Parent=Os02t0136000-00
Chr02	irgsp1_rep	CDS	1915335	1915870	.	-	2	Parent=Os02t0136000-00
Chr02	irgsp1_rep	CDS	1915199	1915249	.	-	0	Parent=Os02t0136000-00
Chr02	irgsp1_rep	CDS	1914249	1915140	.	-	0	Parent=Os02t0136000-00
Chr02	irgsp1_rep	CDS	1913425	1914065	.	-	2	Parent=Os02t0136000-00
Chr02	irgsp1_rep	three_prime_UTR	1913422	1913424	.	-	.	Parent=Os02t0136000-00
Chr02	irgsp1_rep	mRNA	1928657	1929365	.	+	.	ID=Os02t0136150-00;Name=Os02t0136150-00;Locus_id=Os02g0136150;Note=Hypothetical gene.;Transcript_evidence=CT835435 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os02t0136150-00;KEGG=Os02t0136150-00
Chr02	irgsp1_rep	CDS	1928657	1928944	.	+	0	Parent=Os02t0136150-00
Chr02	irgsp1_rep	three_prime_UTR	1928945	1929122	.	+	.	Parent=Os02t0136150-00
Chr02	irgsp1_rep	three_prime_UTR	1929200	1929365	.	+	.	Parent=Os02t0136150-00
Chr02	irgsp1_rep	mRNA	1930432	1932419	.	-	.	ID=Os02t0136400-00;Name=Os02t0136400-00;Locus_id=Os02g0136400;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8AHD1 (UniProt);TENOR=Os02t0136400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	1931950	1932419	.	-	0	Parent=Os02t0136400-00
Chr02	irgsp1_rep	CDS	1930798	1931692	.	-	1	Parent=Os02t0136400-00
Chr02	irgsp1_rep	CDS	1930432	1930500	.	-	0	Parent=Os02t0136400-00
Chr02	irgsp1_rep	mRNA	1947627	1949400	.	-	.	ID=Os02t0136800-01;Name=Os02t0136800-01;Locus_id=Os02g0136800;Note=Protein of unknown function DUF1677%2C Oryza sativa family protein.;Transcript_evidence=AK070727 (DDBJ%2C Best hit);ORF_evidence=B8AHD3 (UniProt);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);NIAS_FLcDNA=J023058D10;Expression=AK070727;TENOR=Os02t0136800-01;KEGG=Os02t0136800-01
Chr02	irgsp1_rep	five_prime_UTR	1949177	1949400	.	-	.	Parent=Os02t0136800-01
Chr02	irgsp1_rep	five_prime_UTR	1948897	1949075	.	-	.	Parent=Os02t0136800-01
Chr02	irgsp1_rep	CDS	1947841	1948896	.	-	0	Parent=Os02t0136800-01
Chr02	irgsp1_rep	three_prime_UTR	1947627	1947840	.	-	.	Parent=Os02t0136800-01
Chr02	irgsp1_rep	mRNA	1946332	1949354	.	-	.	ID=Os02t0136800-02;Name=Os02t0136800-02;Locus_id=Os02g0136800;Note=Protein of unknown function DUF1677%2C Oryza sativa family protein.;Transcript_evidence=AK103485 (DDBJ%2C Best hit);ORF_evidence=B8AHD3 (UniProt);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);NIAS_FLcDNA=J033130L10;Expression=AK103485;TENOR=Os02t0136800-02;KEGG=Os02t0136800-02
Chr02	irgsp1_rep	five_prime_UTR	1948897	1949354	.	-	.	Parent=Os02t0136800-02
Chr02	irgsp1_rep	CDS	1947841	1948896	.	-	0	Parent=Os02t0136800-02
Chr02	irgsp1_rep	three_prime_UTR	1946812	1947840	.	-	.	Parent=Os02t0136800-02
Chr02	irgsp1_rep	three_prime_UTR	1946332	1946682	.	-	.	Parent=Os02t0136800-02
Chr02	irgsp1_rep	mRNA	1948600	1949119	.	+	.	ID=Os02t0136850-00;Name=Os02t0136850-00;Locus_id=Os02g0136850;Note=Non-protein coding transcript.;Transcript_evidence=CU406396 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os02t0136850-00
Chr02	irgsp1_rep	exon	1948600	1949119	.	+	.	Parent=Os02t0136850-00
Chr02	irgsp1_rep	mRNA	1949825	1953397	.	+	.	ID=Os02t0136900-01;Name=Os02t0136900-01;Locus_id=Os02g0136900;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK111638 (DDBJ%2C Best hit);ORF_evidence=B8AHD4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013122N06;Oryzabase=19679;Expression=AK111638;TENOR=Os02t0136900-01;KEGG=Os02t0136900-01
Chr02	irgsp1_rep	five_prime_UTR	1949825	1949925	.	+	.	Parent=Os02t0136900-01
Chr02	irgsp1_rep	CDS	1949926	1950037	.	+	0	Parent=Os02t0136900-01
Chr02	irgsp1_rep	CDS	1950121	1950250	.	+	2	Parent=Os02t0136900-01
Chr02	irgsp1_rep	CDS	1950393	1950464	.	+	1	Parent=Os02t0136900-01
Chr02	irgsp1_rep	CDS	1950551	1950616	.	+	1	Parent=Os02t0136900-01
Chr02	irgsp1_rep	CDS	1950718	1950789	.	+	1	Parent=Os02t0136900-01
Chr02	irgsp1_rep	CDS	1950869	1950934	.	+	1	Parent=Os02t0136900-01
Chr02	irgsp1_rep	CDS	1951043	1951108	.	+	1	Parent=Os02t0136900-01
Chr02	irgsp1_rep	CDS	1951198	1951607	.	+	1	Parent=Os02t0136900-01
Chr02	irgsp1_rep	CDS	1951789	1951994	.	+	2	Parent=Os02t0136900-01
Chr02	irgsp1_rep	CDS	1952121	1952407	.	+	0	Parent=Os02t0136900-01
Chr02	irgsp1_rep	CDS	1952527	1952665	.	+	1	Parent=Os02t0136900-01
Chr02	irgsp1_rep	CDS	1952746	1953141	.	+	0	Parent=Os02t0136900-01
Chr02	irgsp1_rep	three_prime_UTR	1953142	1953397	.	+	.	Parent=Os02t0136900-01
Chr02	irgsp1_rep	mRNA	1955439	1956461	.	+	.	ID=Os02t0136933-00;Name=Os02t0136933-00;Locus_id=Os02g0136933;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9F2M0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943);TENOR=Os02t0136933-00;KEGG=Os02t0136933-00
Chr02	irgsp1_rep	CDS	1955439	1956461	.	+	0	Parent=Os02t0136933-00
Chr02	irgsp1_rep	mRNA	1955909	1960166	.	-	.	ID=Os02t0136966-01;Name=Os02t0136966-01;Locus_id=Os02g0136966;Note=Hypothetical gene.;Transcript_evidence=AK288412 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090030N09;TENOR=Os02t0136966-01;KEGG=Os02t0136966-01
Chr02	irgsp1_rep	five_prime_UTR	1956308	1960166	.	-	.	Parent=Os02t0136966-01
Chr02	irgsp1_rep	CDS	1955909	1956307	.	-	0	Parent=Os02t0136966-01
Chr02	irgsp1_rep	mRNA	1957374	1965374	.	+	.	ID=Os02t0137000-01;Name=Os02t0137000-01;Locus_id=Os02g0137000;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK111719 (DDBJ%2C Best hit);ORF_evidence=XP_002875574.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943);NIAS_FLcDNA=J023023G19;Expression=AK111719;TENOR=Os02t0137000-01;KEGG=Os02t0137000-01
Chr02	irgsp1_rep	five_prime_UTR	1957374	1957374	.	+	.	Parent=Os02t0137000-01
Chr02	irgsp1_rep	CDS	1957375	1957479	.	+	0	Parent=Os02t0137000-01
Chr02	irgsp1_rep	CDS	1957954	1958041	.	+	0	Parent=Os02t0137000-01
Chr02	irgsp1_rep	CDS	1958143	1958324	.	+	2	Parent=Os02t0137000-01
Chr02	irgsp1_rep	CDS	1958508	1958644	.	+	0	Parent=Os02t0137000-01
Chr02	irgsp1_rep	CDS	1958790	1958856	.	+	1	Parent=Os02t0137000-01
Chr02	irgsp1_rep	CDS	1959132	1959246	.	+	0	Parent=Os02t0137000-01
Chr02	irgsp1_rep	CDS	1959390	1959501	.	+	2	Parent=Os02t0137000-01
Chr02	irgsp1_rep	CDS	1960420	1960495	.	+	1	Parent=Os02t0137000-01
Chr02	irgsp1_rep	CDS	1960576	1960758	.	+	0	Parent=Os02t0137000-01
Chr02	irgsp1_rep	CDS	1961166	1961326	.	+	0	Parent=Os02t0137000-01
Chr02	irgsp1_rep	CDS	1962028	1962130	.	+	1	Parent=Os02t0137000-01
Chr02	irgsp1_rep	CDS	1962721	1962928	.	+	0	Parent=Os02t0137000-01
Chr02	irgsp1_rep	CDS	1963015	1963304	.	+	2	Parent=Os02t0137000-01
Chr02	irgsp1_rep	CDS	1963388	1963509	.	+	0	Parent=Os02t0137000-01
Chr02	irgsp1_rep	CDS	1963605	1963749	.	+	1	Parent=Os02t0137000-01
Chr02	irgsp1_rep	CDS	1963841	1963933	.	+	0	Parent=Os02t0137000-01
Chr02	irgsp1_rep	CDS	1964040	1964117	.	+	0	Parent=Os02t0137000-01
Chr02	irgsp1_rep	three_prime_UTR	1964118	1964517	.	+	.	Parent=Os02t0137000-01
Chr02	irgsp1_rep	three_prime_UTR	1964599	1965374	.	+	.	Parent=Os02t0137000-01
Chr02	irgsp1_rep	mRNA	1967733	1972800	.	+	.	ID=Os02t0137100-01;Name=Os02t0137100-01;Locus_id=Os02g0137100;Note=Similar to plant-specific domain TIGR01589 family protein.;Transcript_evidence=AK073353 (DDBJ%2C Best hit);ORF_evidence=NP_001148712.1 (RefSeq);InterPro=Conserved hypothetical protein CHP01589%2C plant (IPR006476);NIAS_FLcDNA=J033025E21;Expression=AK073353;TENOR=Os02t0137100-01;KEGG=Os02t0137100-01
Chr02	irgsp1_rep	five_prime_UTR	1967733	1967925	.	+	.	Parent=Os02t0137100-01
Chr02	irgsp1_rep	five_prime_UTR	1968100	1968143	.	+	.	Parent=Os02t0137100-01
Chr02	irgsp1_rep	CDS	1968144	1968212	.	+	0	Parent=Os02t0137100-01
Chr02	irgsp1_rep	CDS	1969379	1969484	.	+	0	Parent=Os02t0137100-01
Chr02	irgsp1_rep	CDS	1969785	1969970	.	+	2	Parent=Os02t0137100-01
Chr02	irgsp1_rep	CDS	1970535	1971011	.	+	2	Parent=Os02t0137100-01
Chr02	irgsp1_rep	CDS	1971121	1971204	.	+	2	Parent=Os02t0137100-01
Chr02	irgsp1_rep	CDS	1971378	1971445	.	+	2	Parent=Os02t0137100-01
Chr02	irgsp1_rep	three_prime_UTR	1971446	1971470	.	+	.	Parent=Os02t0137100-01
Chr02	irgsp1_rep	three_prime_UTR	1972335	1972800	.	+	.	Parent=Os02t0137100-01
Chr02	irgsp1_rep	mRNA	1972970	1974762	.	-	.	ID=Os02t0137200-01;Name=Os02t0137200-01;Locus_id=Os02g0137200;Oryzabase Gene Name Synonym(s)=50S ribosomal protein;Note=Similar to 50S ribosomal protein L3-1%2C chloroplast precursor.;Transcript_evidence=AK099849 (DDBJ%2C Best hit);ORF_evidence=B6UF84 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L3 (IPR000597),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Ribosomal protein L3%2C conserved site (IPR019926),Ribosomal protein L3%2C bacterial/organelle-type (IPR019927);NIAS_FLcDNA=J013110B11;Oryzabase=14716;Expression=AK099849;TENOR=Os02t0137200-01;KEGG=Os02t0137200-01
Chr02	irgsp1_rep	five_prime_UTR	1974761	1974762	.	-	.	Parent=Os02t0137200-01
Chr02	irgsp1_rep	CDS	1974648	1974760	.	-	0	Parent=Os02t0137200-01
Chr02	irgsp1_rep	CDS	1974138	1974559	.	-	1	Parent=Os02t0137200-01
Chr02	irgsp1_rep	CDS	1973115	1973404	.	-	2	Parent=Os02t0137200-01
Chr02	irgsp1_rep	three_prime_UTR	1972970	1973114	.	-	.	Parent=Os02t0137200-01
Chr02	irgsp1_rep	mRNA	1972939	1974198	.	-	.	ID=Os02t0137200-02;Name=Os02t0137200-02;Locus_id=Os02g0137200;Oryzabase Gene Name Synonym(s)=50S ribosomal protein;Note=Similar to 50S ribosomal protein L3.;Transcript_evidence=AK060290 (DDBJ%2C Best hit);ORF_evidence=B6UF84 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L3 (IPR000597),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Ribosomal protein L3%2C conserved site (IPR019926),Ribosomal protein L3%2C bacterial/organelle-type (IPR019927);NIAS_FLcDNA=001-006-D05;Oryzabase=14716;Expression=AK060290;TENOR=Os02t0137200-02;KEGG=Os02t0137200-02
Chr02	irgsp1_rep	CDS	1974138	1974198	.	-	0	Parent=Os02t0137200-02
Chr02	irgsp1_rep	CDS	1973115	1973404	.	-	2	Parent=Os02t0137200-02
Chr02	irgsp1_rep	three_prime_UTR	1972939	1973114	.	-	.	Parent=Os02t0137200-02
Chr02	irgsp1_rep	mRNA	1979693	1983583	.	+	.	ID=Os02t0137400-01;Name=Os02t0137400-01;Locus_id=Os02g0137400;Note=Similar to Spliceosomal-like protein.;Transcript_evidence=AK068480 (DDBJ%2C Best hit);ORF_evidence=Q9LD60 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515);InterPro=Cleavage/polyadenylation specificity factor%2C A subunit%2C C-terminal (IPR004871),WD40/YVTN repeat-like-containing domain (IPR015943);NIAS_FLcDNA=J013153O19;TENOR=Os02t0137400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	1979693	1981639	.	+	0	Parent=Os02t0137400-01
Chr02	irgsp1_rep	CDS	1982280	1982771	.	+	0	Parent=Os02t0137400-01
Chr02	irgsp1_rep	CDS	1982950	1983087	.	+	0	Parent=Os02t0137400-01
Chr02	irgsp1_rep	three_prime_UTR	1983088	1983583	.	+	.	Parent=Os02t0137400-01
Chr02	irgsp1_rep	mRNA	1986386	1987568	.	+	.	ID=Os02t0137450-00;Name=Os02t0137450-00;Locus_id=Os02g0137450;CGSNL Gene Symbol=HAC703;CGSNL Gene Name=HISTONE ACETYLTRANSFERASE HAC703;Oryzabase Gene Symbol Synonym(s)=OsHAC703%2C OsKIX_2%2C OsHAC1;Oryzabase Gene Name Synonym(s)=Histone acetyltransferase HAC703%2C KIX domain protein 2;Note=Conserved hypothetical protein.;Transcript_evidence=AK369368 (DDBJ);ORF_evidence=B9F2M2 (UniProt);Oryzabase=11168;TENOR=Os02t0137450-00
Chr02	irgsp1_rep	CDS	1986386	1986570	.	+	0	Parent=Os02t0137450-00
Chr02	irgsp1_rep	CDS	1986960	1987065	.	+	1	Parent=Os02t0137450-00
Chr02	irgsp1_rep	CDS	1987188	1987568	.	+	0	Parent=Os02t0137450-00
Chr02	irgsp1_rep	mRNA	1991843	1997302	.	+	.	ID=Os02t0137500-01;Name=Os02t0137500-01;Locus_id=Os02g0137500;CGSNL Gene Symbol=HAC703;CGSNL Gene Name=HISTONE ACETYLTRANSFERASE HAC703;Oryzabase Gene Symbol Synonym(s)=OsHAC703%2C OsKIX_2%2C OsHAC1;Oryzabase Gene Name Synonym(s)=Histone acetyltransferase HAC703%2C KIX domain protein 2;Note=Similar to histone acetyltransferase.;Transcript_evidence=AK241505 (DDBJ%2C Best hit);ORF_evidence=XP_002330477.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: transcription cofactor activity (GO:0003712),Molecular Function: histone acetyltransferase activity (GO:0004402),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C TAZ-type (IPR000197),Zinc finger%2C ZZ-type (IPR000433),Histone H3-K56 acetyltransferase%2C RTT109 (IPR013178);NIAS_FLcDNA=J065167P10;Oryzabase=11168;TENOR=Os02t0137500-01;KEGG=Os02t0137500-01 (EC:2.3.1.48)
Chr02	irgsp1_rep	CDS	1991843	1992013	.	+	0	Parent=Os02t0137500-01
Chr02	irgsp1_rep	CDS	1993070	1993198	.	+	0	Parent=Os02t0137500-01
Chr02	irgsp1_rep	CDS	1993291	1993491	.	+	0	Parent=Os02t0137500-01
Chr02	irgsp1_rep	CDS	1993651	1993793	.	+	0	Parent=Os02t0137500-01
Chr02	irgsp1_rep	CDS	1993878	1994190	.	+	1	Parent=Os02t0137500-01
Chr02	irgsp1_rep	CDS	1994349	1994488	.	+	0	Parent=Os02t0137500-01
Chr02	irgsp1_rep	CDS	1995320	1995398	.	+	1	Parent=Os02t0137500-01
Chr02	irgsp1_rep	CDS	1995484	1995869	.	+	0	Parent=Os02t0137500-01
Chr02	irgsp1_rep	CDS	1996204	1996425	.	+	1	Parent=Os02t0137500-01
Chr02	irgsp1_rep	CDS	1996521	1996632	.	+	1	Parent=Os02t0137500-01
Chr02	irgsp1_rep	three_prime_UTR	1996633	1997302	.	+	.	Parent=Os02t0137500-01
Chr02	irgsp1_rep	mRNA	1998224	2000826	.	+	.	ID=Os02t0137600-01;Name=Os02t0137600-01;Locus_id=Os02g0137600;Note=Bacterial methyltransferase family protein.;Transcript_evidence=AK102168 (DDBJ%2C Best hit);ORF_evidence=NP_196652.1 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=S-adenosyl-L-methionine-dependent methyltransferase%2C MraW (IPR002903),S-adenosyl-L-methionine-dependent methyltransferase%2C MraW%2C recognition domain (IPR023397);NIAS_FLcDNA=J033086H14;Expression=AK102168;TENOR=Os02t0137600-01;KEGG=Os02t0137600-01
Chr02	irgsp1_rep	five_prime_UTR	1998224	1998277	.	+	.	Parent=Os02t0137600-01
Chr02	irgsp1_rep	CDS	1998278	1998655	.	+	0	Parent=Os02t0137600-01
Chr02	irgsp1_rep	CDS	1998836	1999111	.	+	0	Parent=Os02t0137600-01
Chr02	irgsp1_rep	CDS	1999203	1999271	.	+	0	Parent=Os02t0137600-01
Chr02	irgsp1_rep	CDS	1999881	2000073	.	+	0	Parent=Os02t0137600-01
Chr02	irgsp1_rep	CDS	2000161	2000555	.	+	2	Parent=Os02t0137600-01
Chr02	irgsp1_rep	three_prime_UTR	2000556	2000826	.	+	.	Parent=Os02t0137600-01
Chr02	irgsp1_rep	mRNA	2001887	2005864	.	+	.	ID=Os02t0137700-01;Name=Os02t0137700-01;Locus_id=Os02g0137700;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK241047 (DDBJ%2C Best hit);ORF_evidence=XP_002890185.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NmrA-like (IPR008030),Galactose-binding domain-like (IPR008979),NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (IPR013857),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J065061J05;TENOR=Os02t0137700-01;KEGG=Os02t0137700-01
Chr02	irgsp1_rep	five_prime_UTR	2001887	2001937	.	+	.	Parent=Os02t0137700-01
Chr02	irgsp1_rep	CDS	2001938	2002510	.	+	0	Parent=Os02t0137700-01
Chr02	irgsp1_rep	CDS	2002821	2003033	.	+	0	Parent=Os02t0137700-01
Chr02	irgsp1_rep	CDS	2003129	2003333	.	+	0	Parent=Os02t0137700-01
Chr02	irgsp1_rep	CDS	2003485	2003560	.	+	2	Parent=Os02t0137700-01
Chr02	irgsp1_rep	CDS	2003665	2003800	.	+	1	Parent=Os02t0137700-01
Chr02	irgsp1_rep	CDS	2003905	2004009	.	+	0	Parent=Os02t0137700-01
Chr02	irgsp1_rep	CDS	2004095	2004172	.	+	0	Parent=Os02t0137700-01
Chr02	irgsp1_rep	CDS	2004264	2004353	.	+	0	Parent=Os02t0137700-01
Chr02	irgsp1_rep	CDS	2004441	2004506	.	+	0	Parent=Os02t0137700-01
Chr02	irgsp1_rep	CDS	2004836	2004892	.	+	0	Parent=Os02t0137700-01
Chr02	irgsp1_rep	CDS	2004996	2005073	.	+	0	Parent=Os02t0137700-01
Chr02	irgsp1_rep	CDS	2005165	2005212	.	+	0	Parent=Os02t0137700-01
Chr02	irgsp1_rep	CDS	2005330	2005401	.	+	0	Parent=Os02t0137700-01
Chr02	irgsp1_rep	three_prime_UTR	2005402	2005864	.	+	.	Parent=Os02t0137700-01
Chr02	irgsp1_rep	mRNA	2007232	2009960	.	+	.	ID=Os02t0137800-01;Name=Os02t0137800-01;Locus_id=Os02g0137800;RAP-DB Gene Symbol Synonym(s)=RGG2;RAP-DB Gene Name Synonym(s)=heterotrimeric G-protein gamma subunit 2%2C G protein gamma2 subunit%2C rice G protein gamma subunit 2%2C G protein gamma subunit 2;CGSNL Gene Symbol=RGG2;CGSNL Gene Name=RICE G PROTEIN GAMMA SUBUNIT 2;Oryzabase Gene Symbol Synonym(s)=OsRGG2;Oryzabase Gene Name Synonym(s)=heterotrimeric G-protein gamma subunit 2%2C G protein gamma2 subunit%2C rice G protein gamma subunit 2%2C G protein gamma subunit 2%2C type B heterotrimeric G protein c subunit;Note=Heterotrimeric G protein gamma subunit 2%2C Regulation of abiotic stresses;Transcript_evidence=AK060530,GU066806 (Swarna%2C indica);ORF_evidence=Q6YXX9,A2X0N9 (indica);GO=Biological Process: G-protein coupled receptor signaling pathway (GO:0007186),Molecular Function: signal transducer activity (GO:0004871),Cellular Component: heterotrimeric G-protein complex (GO:0005834);InterPro=G-protein gamma-like domain (IPR015898);NIAS_FLcDNA=001-020-H12;Manual Curation=October 31%2C 2016;Literature_PMID=22751322,15078334;Oryzabase=18143;Expression=AK060530;TENOR=Os02t0137800-01;KEGG=Os02t0137800-01
Chr02	irgsp1_rep	five_prime_UTR	2007232	2007413	.	+	.	Parent=Os02t0137800-01
Chr02	irgsp1_rep	CDS	2007414	2007665	.	+	0	Parent=Os02t0137800-01
Chr02	irgsp1_rep	CDS	2009268	2009320	.	+	0	Parent=Os02t0137800-01
Chr02	irgsp1_rep	CDS	2009409	2009453	.	+	1	Parent=Os02t0137800-01
Chr02	irgsp1_rep	CDS	2009559	2009661	.	+	1	Parent=Os02t0137800-01
Chr02	irgsp1_rep	three_prime_UTR	2009662	2009960	.	+	.	Parent=Os02t0137800-01
Chr02	irgsp1_rep	mRNA	2007234	2009961	.	+	.	ID=Os02t0137800-02;Name=Os02t0137800-02;Locus_id=Os02g0137800;CGSNL Gene Symbol=RGG2;CGSNL Gene Name=RICE G PROTEIN GAMMA SUBUNIT 2;Oryzabase Gene Symbol Synonym(s)=OsRGG2;Oryzabase Gene Name Synonym(s)=heterotrimeric G-protein gamma subunit 2%2C G protein gamma2 subunit%2C rice G protein gamma subunit 2%2C G protein gamma subunit 2%2C type B heterotrimeric G protein c subunit;Note=Similar to G protein gamma subunit 2.;Transcript_evidence=AK101629 (DDBJ%2C Best hit);ORF_evidence=D0VE83 (UniProt);NIAS_FLcDNA=J033054L18;Oryzabase=18143;TENOR=Os02t0137800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	2007234	2007413	.	+	.	Parent=Os02t0137800-02
Chr02	irgsp1_rep	CDS	2007414	2007794	.	+	0	Parent=Os02t0137800-02
Chr02	irgsp1_rep	three_prime_UTR	2007795	2009320	.	+	.	Parent=Os02t0137800-02
Chr02	irgsp1_rep	three_prime_UTR	2009409	2009453	.	+	.	Parent=Os02t0137800-02
Chr02	irgsp1_rep	three_prime_UTR	2009559	2009961	.	+	.	Parent=Os02t0137800-02
Chr02	irgsp1_rep	mRNA	2021051	2023488	.	-	.	ID=Os02t0138000-00;Name=Os02t0138000-00;Locus_id=Os02g0138000;Oryzabase Gene Name Synonym(s)=leucine-rich repeat (LRR)-containing protein;Note=Leucine-rich repeat%2C plant specific containing protein.;Transcript_evidence=CT837766 (DDBJ%2C Best hit);ORF_evidence=NP_001045834.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);Oryzabase=22753;TENOR=Os02t0138000-00;KEGG=Os02t0138000-00
Chr02	irgsp1_rep	five_prime_UTR	2023306	2023488	.	-	.	Parent=Os02t0138000-00
Chr02	irgsp1_rep	CDS	2021221	2023305	.	-	0	Parent=Os02t0138000-00
Chr02	irgsp1_rep	three_prime_UTR	2021051	2021220	.	-	.	Parent=Os02t0138000-00
Chr02	irgsp1_rep	mRNA	2036165	2036874	.	+	.	ID=Os02t0138100-00;Name=Os02t0138100-00;Locus_id=Os02g0138100;Note=Conserved hypothetical protein.;Transcript_evidence=EU957279 (DDBJ);ORF_evidence=NP_001045835.2 (RefSeq);TENOR=Os02t0138100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	2036165	2036520	.	+	0	Parent=Os02t0138100-00
Chr02	irgsp1_rep	CDS	2036662	2036848	.	+	1	Parent=Os02t0138100-00
Chr02	irgsp1_rep	three_prime_UTR	2036849	2036874	.	+	.	Parent=Os02t0138100-00
Chr02	irgsp1_rep	mRNA	2037530	2040430	.	+	.	ID=Os02t0138200-01;Name=Os02t0138200-01;Locus_id=Os02g0138200;Note=RNA recognition motif%2C RNP-1 domain containing protein.;Transcript_evidence=AK064810 (DDBJ%2C Best hit);ORF_evidence=A0SPK3 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013000D21;Expression=AK064810;TENOR=Os02t0138200-01;KEGG=Os02t0138200-01
Chr02	irgsp1_rep	five_prime_UTR	2037530	2037717	.	+	.	Parent=Os02t0138200-01
Chr02	irgsp1_rep	CDS	2037718	2037939	.	+	0	Parent=Os02t0138200-01
Chr02	irgsp1_rep	CDS	2038169	2038384	.	+	0	Parent=Os02t0138200-01
Chr02	irgsp1_rep	CDS	2038862	2039329	.	+	0	Parent=Os02t0138200-01
Chr02	irgsp1_rep	CDS	2039419	2040171	.	+	0	Parent=Os02t0138200-01
Chr02	irgsp1_rep	three_prime_UTR	2040172	2040430	.	+	.	Parent=Os02t0138200-01
Chr02	irgsp1_rep	mRNA	2038891	2040424	.	+	.	ID=Os02t0138200-02;Name=Os02t0138200-02;Locus_id=Os02g0138200;Note=Similar to Marker Xucw84.;Transcript_evidence=AK062066 (DDBJ%2C Best hit);ORF_evidence=A0SPK3 (UniProt);NIAS_FLcDNA=001-044-D05;Expression=AK062066;TENOR=Os02t0138200-02;KEGG=Os02t0138200-02
Chr02	irgsp1_rep	five_prime_UTR	2038891	2038891	.	+	.	Parent=Os02t0138200-02
Chr02	irgsp1_rep	CDS	2038892	2039329	.	+	0	Parent=Os02t0138200-02
Chr02	irgsp1_rep	CDS	2039419	2039730	.	+	0	Parent=Os02t0138200-02
Chr02	irgsp1_rep	CDS	2040028	2040171	.	+	0	Parent=Os02t0138200-02
Chr02	irgsp1_rep	three_prime_UTR	2040172	2040424	.	+	.	Parent=Os02t0138200-02
Chr02	irgsp1_rep	mRNA	2039085	2040424	.	+	.	ID=Os02t0138200-03;Name=Os02t0138200-03;Locus_id=Os02g0138200;Note=Similar to Marker Xucw84.;Transcript_evidence=AK068239 (DDBJ%2C Best hit);ORF_evidence=A0SPK3 (UniProt);NIAS_FLcDNA=J013147K19;Expression=AK068239;TENOR=Os02t0138200-03;KEGG=Os02t0138200-03
Chr02	irgsp1_rep	five_prime_UTR	2039085	2039095	.	+	.	Parent=Os02t0138200-03
Chr02	irgsp1_rep	CDS	2039096	2039329	.	+	0	Parent=Os02t0138200-03
Chr02	irgsp1_rep	CDS	2039419	2040171	.	+	0	Parent=Os02t0138200-03
Chr02	irgsp1_rep	three_prime_UTR	2040172	2040424	.	+	.	Parent=Os02t0138200-03
Chr02	irgsp1_rep	mRNA	2050853	2056023	.	-	.	ID=Os02t0138500-00;Name=Os02t0138500-00;Locus_id=Os02g0138500;Note=GDP-fucose protein O-fucosyltransferase domain containing protein.;Transcript_evidence=tplb0019k20 (Wheat FLcDNA);ORF_evidence=A2Z2B7 (UniProt);InterPro=GDP-fucose protein O-fucosyltransferase (IPR019378);TENOR=Os02t0138500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	2055955	2056023	.	-	.	Parent=Os02t0138500-00
Chr02	irgsp1_rep	five_prime_UTR	2055715	2055876	.	-	.	Parent=Os02t0138500-00
Chr02	irgsp1_rep	five_prime_UTR	2055341	2055615	.	-	.	Parent=Os02t0138500-00
Chr02	irgsp1_rep	CDS	2055327	2055340	.	-	0	Parent=Os02t0138500-00
Chr02	irgsp1_rep	CDS	2055042	2055246	.	-	1	Parent=Os02t0138500-00
Chr02	irgsp1_rep	CDS	2054855	2054953	.	-	0	Parent=Os02t0138500-00
Chr02	irgsp1_rep	three_prime_UTR	2054782	2054854	.	-	.	Parent=Os02t0138500-00
Chr02	irgsp1_rep	three_prime_UTR	2050853	2051205	.	-	.	Parent=Os02t0138500-00
Chr02	irgsp1_rep	mRNA	2064263	2065735	.	+	.	ID=Os02t0138600-01;Name=Os02t0138600-01;Locus_id=Os02g0138600;Note=Protein of unknown function DUF1677%2C Oryza sativa family protein.;Transcript_evidence=AK071778 (DDBJ%2C Best hit);ORF_evidence=Q6YXZ0 (UniProt);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);NIAS_FLcDNA=J023113L07;Expression=AK071778;TENOR=Os02t0138600-01;KEGG=Os02t0138600-01
Chr02	irgsp1_rep	five_prime_UTR	2064263	2064485	.	+	.	Parent=Os02t0138600-01
Chr02	irgsp1_rep	CDS	2064486	2065613	.	+	0	Parent=Os02t0138600-01
Chr02	irgsp1_rep	three_prime_UTR	2065614	2065735	.	+	.	Parent=Os02t0138600-01
Chr02	irgsp1_rep	mRNA	2073173	2075673	.	+	.	ID=Os02t0138900-01;Name=Os02t0138900-01;Locus_id=Os02g0138900;Oryzabase Gene Symbol Synonym(s)=CAX2%2C OsCAX2%2C OsCAX4%2C CAX4%2C OsSTA47%2C OsNCX3%2C NCX3;Oryzabase Gene Name Synonym(s)=Vacuolar cation/proton exchanger 2%2C Ca(2+)/H(+) exchanger 2%2C cation/H+ exchanger 2%2C vacuolar cation/H+ exchanger 4%2C Na+/Ca2+ Exchanger 3%2C Sodium/calcium exchanger 3;Note=Similar to ATCAX5%3B calcium:cation antiporter/ cation:cation antiporter.;Transcript_evidence=AK240658 (DDBJ%2C Best hit);ORF_evidence=NP_001031196.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Sodium/calcium exchanger membrane region (IPR004837);NIAS_FLcDNA=J023136A12;Oryzabase=15454;TENOR=Os02t0138900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	2073173	2073432	.	+	.	Parent=Os02t0138900-01
Chr02	irgsp1_rep	five_prime_UTR	2073513	2073541	.	+	.	Parent=Os02t0138900-01
Chr02	irgsp1_rep	five_prime_UTR	2073645	2073837	.	+	.	Parent=Os02t0138900-01
Chr02	irgsp1_rep	CDS	2073838	2073841	.	+	0	Parent=Os02t0138900-01
Chr02	irgsp1_rep	CDS	2073919	2074124	.	+	2	Parent=Os02t0138900-01
Chr02	irgsp1_rep	CDS	2074254	2074388	.	+	0	Parent=Os02t0138900-01
Chr02	irgsp1_rep	CDS	2074559	2074675	.	+	0	Parent=Os02t0138900-01
Chr02	irgsp1_rep	CDS	2074773	2074826	.	+	0	Parent=Os02t0138900-01
Chr02	irgsp1_rep	CDS	2074920	2075036	.	+	0	Parent=Os02t0138900-01
Chr02	irgsp1_rep	CDS	2075134	2075230	.	+	0	Parent=Os02t0138900-01
Chr02	irgsp1_rep	CDS	2075344	2075369	.	+	2	Parent=Os02t0138900-01
Chr02	irgsp1_rep	three_prime_UTR	2075370	2075673	.	+	.	Parent=Os02t0138900-01
Chr02	irgsp1_rep	mRNA	2075629	2079136	.	-	.	ID=Os02t0139000-01;Name=Os02t0139000-01;Locus_id=Os02g0139000;RAP-DB Gene Symbol Synonym(s)=PHR3%2C OsPHR3%2C Os-PHR3;RAP-DB Gene Name Synonym(s)=PHOSPHATE STARVATION RESPONSE 3%2C Phosphate Starvation Response3%2C PHOSPHATE RESPONSE3;CGSNL Gene Symbol=PHR3;CGSNL Gene Name=PHOSPHATE STARVATION RESPONSE 3;Oryzabase Gene Symbol Synonym(s)=OsPHR3%2C Os-PHR3%2C OsPHL1%2C PHL1;Oryzabase Gene Name Synonym(s)=Phosphate Starvation Response3%2C PHOSPHATE RESPONSE3;Note=Transcription factor%2C Regulation of Pi signaling and homeostasis%2C Tolerance to low-Pi stress;Transcript_evidence=AK065704;ORF_evidence=Q6YXZ4;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeodomain-like (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930),Myb domain%2C plants (IPR006447),MYB-CC type transcription factor%2C LHEQLE-containing domain (IPR025756);NIAS_FLcDNA=J013037C19;Manual Curation=August 28%2C 2015;Literature_PMID=26082401;Oryzabase=19911;Expression=AK065704;TENOR=Os02t0139000-01;KEGG=Os02t0139000-01
Chr02	irgsp1_rep	five_prime_UTR	2079011	2079136	.	-	.	Parent=Os02t0139000-01
Chr02	irgsp1_rep	five_prime_UTR	2078133	2078206	.	-	.	Parent=Os02t0139000-01
Chr02	irgsp1_rep	CDS	2077482	2078132	.	-	0	Parent=Os02t0139000-01
Chr02	irgsp1_rep	CDS	2077095	2077311	.	-	0	Parent=Os02t0139000-01
Chr02	irgsp1_rep	CDS	2076930	2077006	.	-	2	Parent=Os02t0139000-01
Chr02	irgsp1_rep	CDS	2076798	2076837	.	-	0	Parent=Os02t0139000-01
Chr02	irgsp1_rep	CDS	2076628	2076691	.	-	2	Parent=Os02t0139000-01
Chr02	irgsp1_rep	CDS	2076450	2076519	.	-	1	Parent=Os02t0139000-01
Chr02	irgsp1_rep	CDS	2075881	2076165	.	-	0	Parent=Os02t0139000-01
Chr02	irgsp1_rep	three_prime_UTR	2075629	2075880	.	-	.	Parent=Os02t0139000-01
Chr02	irgsp1_rep	mRNA	2082561	2085271	.	-	.	ID=Os02t0139100-01;Name=Os02t0139100-01;Locus_id=Os02g0139100;Note=Activator of Hsp90 ATPase%2C N-terminal domain containing protein.;Transcript_evidence=AK065722 (DDBJ%2C Best hit);ORF_evidence=D2E9R5 (UniProt);GO=Cellular Component: cytoplasm (GO:0005737),Molecular Function: ATPase activator activity (GO:0001671),Molecular Function: chaperone binding (GO:0051087);InterPro=Activator of Hsp90 ATPase%2C N-terminal (IPR015310);NIAS_FLcDNA=J013038J22;Oryzabase=21638;Expression=AK065722;TENOR=Os02t0139100-01;KEGG=Os02t0139100-01
Chr02	irgsp1_rep	five_prime_UTR	2085044	2085271	.	-	.	Parent=Os02t0139100-01
Chr02	irgsp1_rep	CDS	2084864	2085043	.	-	0	Parent=Os02t0139100-01
Chr02	irgsp1_rep	CDS	2083768	2083821	.	-	0	Parent=Os02t0139100-01
Chr02	irgsp1_rep	CDS	2083429	2083509	.	-	0	Parent=Os02t0139100-01
Chr02	irgsp1_rep	CDS	2083223	2083292	.	-	0	Parent=Os02t0139100-01
Chr02	irgsp1_rep	CDS	2083041	2083129	.	-	2	Parent=Os02t0139100-01
Chr02	irgsp1_rep	CDS	2082811	2082945	.	-	0	Parent=Os02t0139100-01
Chr02	irgsp1_rep	three_prime_UTR	2082561	2082810	.	-	.	Parent=Os02t0139100-01
Chr02	irgsp1_rep	mRNA	2087140	2092997	.	-	.	ID=Os02t0139200-01;Name=Os02t0139200-01;Locus_id=Os02g0139200;RAP-DB Gene Symbol Synonym(s)=OsPRMT5;RAP-DB Gene Name Synonym(s)=protein arginine methyltransferase 5;CGSNL Gene Symbol=PRMT5;CGSNL Gene Name=PROTEIN ARGININE METHYLTRANSFERASE 5;Oryzabase Gene Symbol Synonym(s)=OsPRMT5;Oryzabase Gene Name Synonym(s)=protein arginine methyltransferase 5;Note=Type II protein arginine methyltransferase;Transcript_evidence=AK103804,AK073412;ORF_evidence=Q6YXZ7;GO=Biological Process: protein methylation (GO:0006479),Biological Process: peptidyl-arginine N-methylation (GO:0035246),Molecular Function: methyltransferase activity (GO:0008168);InterPro=S-adenosyl-L-methionine-dependent methyltransferase (IPR029063),Protein arginine N-methyltransferase (IPR025799),Protein arginine N-methyltransferase PRMT5 (IPR007857),PRMT5%2C TIM barrel domain (IPR035247),PRMT5 arginine-N-methyltransferase (IPR035075),PRMT5%2C oligomerisation domain (IPR035248);NIAS_FLcDNA=J033146K04,J033039N19;Manual Curation=September 1%2C 2020;Literature_PMID=21853042;Oryzabase=9675;Expression=AK103804;TENOR=Os02t0139200-01;KEGG=Os02t0139200-01 (EC:2.1.1.320);Subcellular location=nucleus (GO:0005634),cytoplasm (GO:0005737)
Chr02	irgsp1_rep	five_prime_UTR	2092880	2092997	.	-	.	Parent=Os02t0139200-01
Chr02	irgsp1_rep	CDS	2092736	2092879	.	-	0	Parent=Os02t0139200-01
Chr02	irgsp1_rep	CDS	2092436	2092642	.	-	0	Parent=Os02t0139200-01
Chr02	irgsp1_rep	CDS	2091836	2091925	.	-	0	Parent=Os02t0139200-01
Chr02	irgsp1_rep	CDS	2091654	2091731	.	-	0	Parent=Os02t0139200-01
Chr02	irgsp1_rep	CDS	2091458	2091546	.	-	0	Parent=Os02t0139200-01
Chr02	irgsp1_rep	CDS	2091260	2091335	.	-	1	Parent=Os02t0139200-01
Chr02	irgsp1_rep	CDS	2091067	2091153	.	-	0	Parent=Os02t0139200-01
Chr02	irgsp1_rep	CDS	2090836	2090911	.	-	0	Parent=Os02t0139200-01
Chr02	irgsp1_rep	CDS	2090471	2090565	.	-	2	Parent=Os02t0139200-01
Chr02	irgsp1_rep	CDS	2090339	2090374	.	-	0	Parent=Os02t0139200-01
Chr02	irgsp1_rep	CDS	2090182	2090250	.	-	0	Parent=Os02t0139200-01
Chr02	irgsp1_rep	CDS	2089316	2089384	.	-	0	Parent=Os02t0139200-01
Chr02	irgsp1_rep	CDS	2089120	2089173	.	-	0	Parent=Os02t0139200-01
Chr02	irgsp1_rep	CDS	2088900	2088974	.	-	0	Parent=Os02t0139200-01
Chr02	irgsp1_rep	CDS	2088605	2088697	.	-	0	Parent=Os02t0139200-01
Chr02	irgsp1_rep	CDS	2088418	2088521	.	-	0	Parent=Os02t0139200-01
Chr02	irgsp1_rep	CDS	2088261	2088309	.	-	1	Parent=Os02t0139200-01
Chr02	irgsp1_rep	CDS	2088103	2088189	.	-	0	Parent=Os02t0139200-01
Chr02	irgsp1_rep	CDS	2087874	2087979	.	-	0	Parent=Os02t0139200-01
Chr02	irgsp1_rep	CDS	2087677	2087764	.	-	2	Parent=Os02t0139200-01
Chr02	irgsp1_rep	CDS	2087492	2087585	.	-	1	Parent=Os02t0139200-01
Chr02	irgsp1_rep	CDS	2087325	2087408	.	-	0	Parent=Os02t0139200-01
Chr02	irgsp1_rep	three_prime_UTR	2087140	2087324	.	-	.	Parent=Os02t0139200-01
Chr02	irgsp1_rep	mRNA	2096626	2100817	.	+	.	ID=Os02t0139300-01;Name=Os02t0139300-01;Locus_id=Os02g0139300;Note=Glycoside hydrolase%2C family 17 protein.;Transcript_evidence=AK101322 (DDBJ%2C Best hit);ORF_evidence=NP_001151032.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J033034E16;Expression=AK101322;TENOR=Os02t0139300-01;KEGG=Os02t0139300-01
Chr02	irgsp1_rep	five_prime_UTR	2096626	2097301	.	+	.	Parent=Os02t0139300-01
Chr02	irgsp1_rep	CDS	2097302	2097657	.	+	0	Parent=Os02t0139300-01
Chr02	irgsp1_rep	CDS	2099389	2100502	.	+	1	Parent=Os02t0139300-01
Chr02	irgsp1_rep	three_prime_UTR	2100503	2100817	.	+	.	Parent=Os02t0139300-01
Chr02	irgsp1_rep	mRNA	2097011	2100715	.	+	.	ID=Os02t0139300-02;Name=Os02t0139300-02;Locus_id=Os02g0139300;Note=Glycoside hydrolase%2C family 17 protein.;Transcript_evidence=AK072088 (DDBJ%2C Best hit);ORF_evidence=NP_001151032.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J013116O04;Expression=AK072088;TENOR=Os02t0139300-02;KEGG=Os02t0139300-02
Chr02	irgsp1_rep	five_prime_UTR	2097011	2097169	.	+	.	Parent=Os02t0139300-02
Chr02	irgsp1_rep	five_prime_UTR	2097298	2097301	.	+	.	Parent=Os02t0139300-02
Chr02	irgsp1_rep	CDS	2097302	2097657	.	+	0	Parent=Os02t0139300-02
Chr02	irgsp1_rep	CDS	2099389	2100502	.	+	1	Parent=Os02t0139300-02
Chr02	irgsp1_rep	three_prime_UTR	2100503	2100715	.	+	.	Parent=Os02t0139300-02
Chr02	irgsp1_rep	mRNA	2100617	2101451	.	+	.	ID=Os02t0139300-03;Name=Os02t0139300-03;Locus_id=Os02g0139300;Note=Hypothetical gene.;Transcript_evidence=AK111384 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-182-B10;Expression=AK111384;TENOR=Os02t0139300-03;KEGG=Os02t0139300-03
Chr02	irgsp1_rep	five_prime_UTR	2100617	2100766	.	+	.	Parent=Os02t0139300-03
Chr02	irgsp1_rep	CDS	2100767	2100994	.	+	0	Parent=Os02t0139300-03
Chr02	irgsp1_rep	three_prime_UTR	2100995	2101451	.	+	.	Parent=Os02t0139300-03
Chr02	irgsp1_rep	mRNA	2106368	2110510	.	+	.	ID=Os02t0139400-01;Name=Os02t0139400-01;Locus_id=Os02g0139400;CGSNL Gene Symbol=LCRN1;CGSNL Gene Name=LOWER CROWN ROOT NUMBER 1;Oryzabase Gene Symbol Synonym(s)=OsSPL3%2C SPL3;Oryzabase Gene Name Synonym(s)=Squamosa promoter-binding-like protein 3%2C SQUAMOSA Promoter-Binding Protein-Like 3%2C lower crown root number1;Note=Similar to Squamosa promoter-binding-like protein 3.;Transcript_evidence=AK242984 (DDBJ%2C Best hit);ORF_evidence=A3A2Z8 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Transcription factor%2C SBP-box (IPR004333);NIAS_FLcDNA=J090094N03;Oryzabase=11238;TENOR=Os02t0139400-01;KEGG=Os02t0139400-01
Chr02	irgsp1_rep	five_prime_UTR	2106368	2106619	.	+	.	Parent=Os02t0139400-01
Chr02	irgsp1_rep	five_prime_UTR	2106942	2106975	.	+	.	Parent=Os02t0139400-01
Chr02	irgsp1_rep	CDS	2106976	2107658	.	+	0	Parent=Os02t0139400-01
Chr02	irgsp1_rep	CDS	2107792	2107957	.	+	1	Parent=Os02t0139400-01
Chr02	irgsp1_rep	three_prime_UTR	2107958	2108636	.	+	.	Parent=Os02t0139400-01
Chr02	irgsp1_rep	three_prime_UTR	2109938	2110510	.	+	.	Parent=Os02t0139400-01
Chr02	irgsp1_rep	mRNA	2105726	2110544	.	+	.	ID=Os02t0139400-02;Name=Os02t0139400-02;Locus_id=Os02g0139400;RAP-DB Gene Symbol Synonym(s)=OsSPL3%2C LCRN1;RAP-DB Gene Name Synonym(s)=SQUAMOSA PROMOTER-BINDING PROTEIN-LIKE3%2C lower  crown  root  number1;CGSNL Gene Symbol=LCRN1;CGSNL Gene Name=LOWER CROWN ROOT NUMBER 1;Oryzabase Gene Symbol Synonym(s)=OsSPL3%2C SPL3;Oryzabase Gene Name Synonym(s)=Squamosa promoter-binding-like protein 3%2C SQUAMOSA Promoter-Binding Protein-Like 3%2C lower crown root number1;Note=SBP-domain transcription factor%2C OsmiR156  target  gene%2C Regulation of crown root development;Transcript_evidence=Inferred from literature;ORF_evidence=A3A2Z8;GO=Molecular Function: DNA binding (GO:0003677),Cellular Component: nucleus (GO:0005634);InterPro=SBP domain superfamily (IPR036893),SBP domain (IPR004333);Manual Curation=April 15%2C 2019;Literature_PMID=30940685;Oryzabase=11238
Chr02	irgsp1_rep	five_prime_UTR	2105726	2105845	.	+	.	Parent=Os02t0139400-02
Chr02	irgsp1_rep	five_prime_UTR	2105957	2106619	.	+	.	Parent=Os02t0139400-02
Chr02	irgsp1_rep	five_prime_UTR	2106942	2106975	.	+	.	Parent=Os02t0139400-02
Chr02	irgsp1_rep	CDS	2106976	2107658	.	+	0	Parent=Os02t0139400-02
Chr02	irgsp1_rep	CDS	2107792	2107931	.	+	1	Parent=Os02t0139400-02
Chr02	irgsp1_rep	CDS	2108367	2108636	.	+	2	Parent=Os02t0139400-02
Chr02	irgsp1_rep	CDS	2109938	2110254	.	+	2	Parent=Os02t0139400-02
Chr02	irgsp1_rep	three_prime_UTR	2110255	2110544	.	+	.	Parent=Os02t0139400-02
Chr02	irgsp1_rep	mRNA	2114877	2118966	.	-	.	ID=Os02t0139500-01;Name=Os02t0139500-01;Locus_id=Os02g0139500;Oryzabase Gene Symbol Synonym(s)=OsOSC1;Oryzabase Gene Name Synonym(s)=oxidosqualene cyclase 1;Note=Similar to Beta-amyrin synthase.;Transcript_evidence=AK063601 (DDBJ%2C Best hit);ORF_evidence=Q8H2B0 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Prenyltransferase/squalene oxidase (IPR001330),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930);NIAS_FLcDNA=001-118-B11;Oryzabase=17980;Expression=AK063601;TENOR=Os02t0139500-01;KEGG=Os02t0139500-01 (EC:5.4.99.7)
Chr02	irgsp1_rep	five_prime_UTR	2118809	2118966	.	-	.	Parent=Os02t0139500-01
Chr02	irgsp1_rep	CDS	2118239	2118424	.	-	0	Parent=Os02t0139500-01
Chr02	irgsp1_rep	CDS	2117679	2117768	.	-	0	Parent=Os02t0139500-01
Chr02	irgsp1_rep	CDS	2117048	2117242	.	-	0	Parent=Os02t0139500-01
Chr02	irgsp1_rep	CDS	2116845	2116930	.	-	0	Parent=Os02t0139500-01
Chr02	irgsp1_rep	CDS	2115704	2115716	.	-	1	Parent=Os02t0139500-01
Chr02	irgsp1_rep	three_prime_UTR	2115691	2115703	.	-	.	Parent=Os02t0139500-01
Chr02	irgsp1_rep	three_prime_UTR	2115315	2115503	.	-	.	Parent=Os02t0139500-01
Chr02	irgsp1_rep	three_prime_UTR	2114877	2115209	.	-	.	Parent=Os02t0139500-01
Chr02	irgsp1_rep	mRNA	2110965	2118950	.	-	.	ID=Os02t0139500-02;Name=Os02t0139500-02;Locus_id=Os02g0139500;Oryzabase Gene Symbol Synonym(s)=OsOSC1;Oryzabase Gene Name Synonym(s)=oxidosqualene cyclase 1;Note=Similar to Cycloartenol synthase.;Transcript_evidence=AK103080 (DDBJ%2C Best hit);ORF_evidence=Q941S0 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: intramolecular transferase activity (GO:0016866);InterPro=Prenyltransferase/squalene oxidase (IPR001330),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930),Squalene cyclase (IPR018333);NIAS_FLcDNA=J033118E24;Oryzabase=17980;TENOR=Os02t0139500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	2118809	2118950	.	-	.	Parent=Os02t0139500-02
Chr02	irgsp1_rep	CDS	2118239	2118424	.	-	0	Parent=Os02t0139500-02
Chr02	irgsp1_rep	CDS	2117679	2117768	.	-	0	Parent=Os02t0139500-02
Chr02	irgsp1_rep	CDS	2117048	2117242	.	-	0	Parent=Os02t0139500-02
Chr02	irgsp1_rep	CDS	2116846	2116930	.	-	0	Parent=Os02t0139500-02
Chr02	irgsp1_rep	CDS	2115691	2115857	.	-	2	Parent=Os02t0139500-02
Chr02	irgsp1_rep	CDS	2115315	2115503	.	-	0	Parent=Os02t0139500-02
Chr02	irgsp1_rep	CDS	2115057	2115209	.	-	0	Parent=Os02t0139500-02
Chr02	irgsp1_rep	three_prime_UTR	2115016	2115056	.	-	.	Parent=Os02t0139500-02
Chr02	irgsp1_rep	three_prime_UTR	2113895	2114017	.	-	.	Parent=Os02t0139500-02
Chr02	irgsp1_rep	three_prime_UTR	2113696	2113818	.	-	.	Parent=Os02t0139500-02
Chr02	irgsp1_rep	three_prime_UTR	2113339	2113437	.	-	.	Parent=Os02t0139500-02
Chr02	irgsp1_rep	three_prime_UTR	2112845	2112901	.	-	.	Parent=Os02t0139500-02
Chr02	irgsp1_rep	three_prime_UTR	2112688	2112734	.	-	.	Parent=Os02t0139500-02
Chr02	irgsp1_rep	three_prime_UTR	2112447	2112590	.	-	.	Parent=Os02t0139500-02
Chr02	irgsp1_rep	three_prime_UTR	2112138	2112310	.	-	.	Parent=Os02t0139500-02
Chr02	irgsp1_rep	three_prime_UTR	2111803	2111883	.	-	.	Parent=Os02t0139500-02
Chr02	irgsp1_rep	three_prime_UTR	2111496	2111579	.	-	.	Parent=Os02t0139500-02
Chr02	irgsp1_rep	three_prime_UTR	2110965	2111241	.	-	.	Parent=Os02t0139500-02
Chr02	irgsp1_rep	mRNA	2124897	2128513	.	+	.	ID=Os02t0139600-01;Name=Os02t0139600-01;Locus_id=Os02g0139600;Note=Similar to Aspartyl-tRNA synthetase.;Transcript_evidence=AK121266 (DDBJ%2C Best hit);ORF_evidence=B6TIG4 (UniProt);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: aspartyl-tRNA aminoacylation (GO:0006422),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: aspartate-tRNA ligase activity (GO:0004815),Molecular Function: ATP binding (GO:0005524);InterPro=Aspartyl/Asparaginyl-tRNA synthetase%2C class IIb (IPR002312),Aminoacyl-tRNA synthetase%2C class II (D/K/N) (IPR004364),Nucleic acid binding%2C OB-fold%2C tRNA/helicase-type (IPR004365),Aspartyl-tRNA synthetase%2C class IIb%2C archea/euk type (IPR004523),Aminoacyl-tRNA synthetase%2C class II (IPR006195),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),Aminoacyl-tRNA synthetase%2C class II (D/K/N)-like (IPR018150);NIAS_FLcDNA=J023105D18;TENOR=Os02t0139600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	2124897	2125109	.	+	.	Parent=Os02t0139600-01
Chr02	irgsp1_rep	five_prime_UTR	2125209	2125282	.	+	.	Parent=Os02t0139600-01
Chr02	irgsp1_rep	CDS	2125283	2125687	.	+	0	Parent=Os02t0139600-01
Chr02	irgsp1_rep	CDS	2125768	2125881	.	+	0	Parent=Os02t0139600-01
Chr02	irgsp1_rep	CDS	2125986	2126099	.	+	0	Parent=Os02t0139600-01
Chr02	irgsp1_rep	CDS	2126271	2126561	.	+	0	Parent=Os02t0139600-01
Chr02	irgsp1_rep	CDS	2126658	2126768	.	+	0	Parent=Os02t0139600-01
Chr02	irgsp1_rep	CDS	2127142	2127168	.	+	0	Parent=Os02t0139600-01
Chr02	irgsp1_rep	three_prime_UTR	2127169	2127370	.	+	.	Parent=Os02t0139600-01
Chr02	irgsp1_rep	three_prime_UTR	2127555	2127634	.	+	.	Parent=Os02t0139600-01
Chr02	irgsp1_rep	three_prime_UTR	2127912	2128027	.	+	.	Parent=Os02t0139600-01
Chr02	irgsp1_rep	three_prime_UTR	2128141	2128513	.	+	.	Parent=Os02t0139600-01
Chr02	irgsp1_rep	mRNA	2126510	2128507	.	+	.	ID=Os02t0139600-02;Name=Os02t0139600-02;Locus_id=Os02g0139600;Note=Similar to predicted protein.;Transcript_evidence=AK107052 (DDBJ%2C Best hit);ORF_evidence=B6TIG4 (UniProt);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: aspartyl-tRNA aminoacylation (GO:0006422),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: aspartate-tRNA ligase activity (GO:0004815),Molecular Function: ATP binding (GO:0005524);InterPro=Aspartyl/Asparaginyl-tRNA synthetase%2C class IIb (IPR002312),Aminoacyl-tRNA synthetase%2C class II (D/K/N) (IPR004364),Aspartyl-tRNA synthetase%2C class IIb%2C archea/euk type (IPR004523),Aminoacyl-tRNA synthetase%2C class II (IPR006195),Aminoacyl-tRNA synthetase%2C class II (D/K/N)-like (IPR018150);NIAS_FLcDNA=002-121-D03;Expression=AK107052;TENOR=Os02t0139600-02;KEGG=Os02t0139600-02 (EC:6.1.1.12)
Chr02	irgsp1_rep	five_prime_UTR	2126510	2126510	.	+	.	Parent=Os02t0139600-02
Chr02	irgsp1_rep	CDS	2126511	2126561	.	+	0	Parent=Os02t0139600-02
Chr02	irgsp1_rep	CDS	2126658	2126768	.	+	0	Parent=Os02t0139600-02
Chr02	irgsp1_rep	CDS	2127317	2127370	.	+	0	Parent=Os02t0139600-02
Chr02	irgsp1_rep	CDS	2127555	2127634	.	+	0	Parent=Os02t0139600-02
Chr02	irgsp1_rep	CDS	2127912	2128027	.	+	1	Parent=Os02t0139600-02
Chr02	irgsp1_rep	CDS	2128141	2128382	.	+	2	Parent=Os02t0139600-02
Chr02	irgsp1_rep	three_prime_UTR	2128383	2128507	.	+	.	Parent=Os02t0139600-02
Chr02	irgsp1_rep	mRNA	2125318	2128382	.	-	.	ID=Os02t0139650-00;Name=Os02t0139650-00;Locus_id=Os02g0139650;Note=Hypothetical protein.;Transcript_evidence=tplb0049h17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0139650-00
Chr02	irgsp1_rep	CDS	2128143	2128382	.	-	0	Parent=Os02t0139650-00
Chr02	irgsp1_rep	CDS	2127919	2128029	.	-	0	Parent=Os02t0139650-00
Chr02	irgsp1_rep	CDS	2127589	2127639	.	-	0	Parent=Os02t0139650-00
Chr02	irgsp1_rep	three_prime_UTR	2127544	2127588	.	-	.	Parent=Os02t0139650-00
Chr02	irgsp1_rep	three_prime_UTR	2126656	2126807	.	-	.	Parent=Os02t0139650-00
Chr02	irgsp1_rep	three_prime_UTR	2126271	2126556	.	-	.	Parent=Os02t0139650-00
Chr02	irgsp1_rep	three_prime_UTR	2125984	2126099	.	-	.	Parent=Os02t0139650-00
Chr02	irgsp1_rep	three_prime_UTR	2125735	2125886	.	-	.	Parent=Os02t0139650-00
Chr02	irgsp1_rep	three_prime_UTR	2125318	2125647	.	-	.	Parent=Os02t0139650-00
Chr02	irgsp1_rep	mRNA	2128429	2137095	.	-	.	ID=Os02t0139700-01;Name=Os02t0139700-01;Locus_id=Os02g0139700;Oryzabase Gene Symbol Synonym(s)=OsOSC2%2C CAS1;Oryzabase Gene Name Synonym(s)=oxidosqualene cyclase 2%2C cycloartenol synthase 1;Note=Similar to Cycloartenol synthase.;Transcript_evidence=AK121211 (DDBJ%2C Best hit);ORF_evidence=Q941S0 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: intramolecular transferase activity (GO:0016866);InterPro=Prenyltransferase/squalene oxidase (IPR001330),Terpene synthase%2C conserved site (IPR002365),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930),Squalene cyclase (IPR018333);NIAS_FLcDNA=J023089G09;Oryzabase=10201;Expression=AK121211;TENOR=Os02t0139700-01;KEGG=Os02t0139700-01 (EC:5.4.99.8)
Chr02	irgsp1_rep	five_prime_UTR	2136958	2137095	.	-	.	Parent=Os02t0139700-01
Chr02	irgsp1_rep	CDS	2136757	2136957	.	-	0	Parent=Os02t0139700-01
Chr02	irgsp1_rep	CDS	2135418	2135603	.	-	0	Parent=Os02t0139700-01
Chr02	irgsp1_rep	CDS	2135162	2135251	.	-	0	Parent=Os02t0139700-01
Chr02	irgsp1_rep	CDS	2134891	2135085	.	-	0	Parent=Os02t0139700-01
Chr02	irgsp1_rep	CDS	2134707	2134791	.	-	0	Parent=Os02t0139700-01
Chr02	irgsp1_rep	CDS	2134408	2134574	.	-	2	Parent=Os02t0139700-01
Chr02	irgsp1_rep	CDS	2133612	2133800	.	-	0	Parent=Os02t0139700-01
Chr02	irgsp1_rep	CDS	2132859	2132972	.	-	0	Parent=Os02t0139700-01
Chr02	irgsp1_rep	CDS	2132514	2132636	.	-	0	Parent=Os02t0139700-01
Chr02	irgsp1_rep	CDS	2132301	2132423	.	-	0	Parent=Os02t0139700-01
Chr02	irgsp1_rep	CDS	2131989	2132087	.	-	0	Parent=Os02t0139700-01
Chr02	irgsp1_rep	CDS	2131149	2131205	.	-	0	Parent=Os02t0139700-01
Chr02	irgsp1_rep	CDS	2130780	2130826	.	-	0	Parent=Os02t0139700-01
Chr02	irgsp1_rep	CDS	2130530	2130673	.	-	1	Parent=Os02t0139700-01
Chr02	irgsp1_rep	CDS	2130230	2130407	.	-	1	Parent=Os02t0139700-01
Chr02	irgsp1_rep	CDS	2129463	2129543	.	-	0	Parent=Os02t0139700-01
Chr02	irgsp1_rep	CDS	2129281	2129364	.	-	0	Parent=Os02t0139700-01
Chr02	irgsp1_rep	CDS	2128660	2128776	.	-	0	Parent=Os02t0139700-01
Chr02	irgsp1_rep	three_prime_UTR	2128429	2128659	.	-	.	Parent=Os02t0139700-01
Chr02	irgsp1_rep	mRNA	2139998	2141323	.	-	.	ID=Os02t0139900-01;Name=Os02t0139900-01;Locus_id=Os02g0139900;Note=Hypothetical protein.;Transcript_evidence=AK063638 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-118-G05;Expression=AK063638;TENOR=Os02t0139900-01;KEGG=Os02t0139900-01
Chr02	irgsp1_rep	five_prime_UTR	2141107	2141323	.	-	.	Parent=Os02t0139900-01
Chr02	irgsp1_rep	CDS	2140741	2141106	.	-	0	Parent=Os02t0139900-01
Chr02	irgsp1_rep	three_prime_UTR	2139998	2140740	.	-	.	Parent=Os02t0139900-01
Chr02	irgsp1_rep	mRNA	2141820	2142429	.	-	.	ID=Os02t0140101-00;Name=Os02t0140101-00;Locus_id=Os02g0140101;Note=Similar to predicted protein.;Transcript_evidence=CT835493 (DDBJ%2C Best hit);ORF_evidence=NP_177574.1 (RefSeq);GO=Biological Process: macromolecule biosynthetic process (GO:0009059),Cellular Component: integral to endoplasmic reticulum membrane (GO:0030176);InterPro=Dolichol phosphate-mannose biosynthesis regulatory (IPR009914);TENOR=Os02t0140101-00;KEGG=Os02t0140101-00
Chr02	irgsp1_rep	five_prime_UTR	2142001	2142429	.	-	.	Parent=Os02t0140101-00
Chr02	irgsp1_rep	CDS	2141842	2142000	.	-	0	Parent=Os02t0140101-00
Chr02	irgsp1_rep	three_prime_UTR	2141820	2141841	.	-	.	Parent=Os02t0140101-00
Chr02	irgsp1_rep	mRNA	2148516	2153358	.	-	.	ID=Os02t0140200-01;Name=Os02t0140200-01;Locus_id=Os02g0140200;Oryzabase Gene Symbol Synonym(s)=OsOSC3;Oryzabase Gene Name Synonym(s)=oxidosqualene cyclase 3;Note=Similar to cycloartenol synthase.;Transcript_evidence=AK066454 (DDBJ%2C Best hit);ORF_evidence=NP_001152006.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: intramolecular transferase activity (GO:0016866);InterPro=Prenyltransferase/squalene oxidase (IPR001330),Terpene synthase%2C conserved site (IPR002365),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930),Squalene cyclase (IPR018333);NIAS_FLcDNA=J013065K03;Oryzabase=17981;TENOR=Os02t0140200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	2153305	2153358	.	-	.	Parent=Os02t0140200-01
Chr02	irgsp1_rep	CDS	2152972	2153304	.	-	0	Parent=Os02t0140200-01
Chr02	irgsp1_rep	CDS	2152594	2152707	.	-	0	Parent=Os02t0140200-01
Chr02	irgsp1_rep	CDS	2152083	2152205	.	-	0	Parent=Os02t0140200-01
Chr02	irgsp1_rep	CDS	2151867	2151989	.	-	0	Parent=Os02t0140200-01
Chr02	irgsp1_rep	CDS	2151566	2151664	.	-	0	Parent=Os02t0140200-01
Chr02	irgsp1_rep	CDS	2151353	2151409	.	-	0	Parent=Os02t0140200-01
Chr02	irgsp1_rep	CDS	2151048	2151094	.	-	0	Parent=Os02t0140200-01
Chr02	irgsp1_rep	CDS	2150811	2150954	.	-	1	Parent=Os02t0140200-01
Chr02	irgsp1_rep	CDS	2150303	2150480	.	-	1	Parent=Os02t0140200-01
Chr02	irgsp1_rep	CDS	2149643	2149723	.	-	0	Parent=Os02t0140200-01
Chr02	irgsp1_rep	CDS	2149474	2149557	.	-	0	Parent=Os02t0140200-01
Chr02	irgsp1_rep	CDS	2148788	2148892	.	-	0	Parent=Os02t0140200-01
Chr02	irgsp1_rep	three_prime_UTR	2148516	2148787	.	-	.	Parent=Os02t0140200-01
Chr02	irgsp1_rep	mRNA	2160093	2161047	.	+	.	ID=Os02t0140300-01;Name=Os02t0140300-01;Locus_id=Os02g0140300;RAP-DB Gene Symbol Synonym(s)=OsCNX6;RAP-DB Gene Name Synonym(s)=cofactor for nitrate reductase and xanthine dehydrogenase 6;CGSNL Gene Symbol=CNX6;CGSNL Gene Name=CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 6;Oryzabase Gene Symbol Synonym(s)=OsCNX6;Oryzabase Gene Name Synonym(s)=cofactor for nitrate reductase and xanthine dehydrogenase 6;Note=Homolog of MoaE%2C Molybdenum cofactor biosynthesis%2C Seed dormancy and germination%2C Positive regulator of abiotic stress tolerance;Transcript_evidence=AK243315;ORF_evidence=Q6Z2X3;GO=Biological Process: Mo-molybdopterin cofactor biosynthetic process (GO:0006777),Molecular Function: molybdopterin synthase activity (GO:0030366),Cellular Component: cytosol (GO:0005829),Cellular Component: molybdopterin synthase complex (GO:0019008);InterPro=Molybdopterin biosynthesis MoaE subunit superfamily (IPR036563),Molybdopterin biosynthesis MoaE (IPR003448),Molybdopterin synthase catalytic subunit%2C eukaryotes (IPR028888);NIAS_FLcDNA=J100056H05;Manual Curation=December 12%2C 2018;Literature_PMID=30471121;Oryzabase=23001;TENOR=Os02t0140300-01;KEGG=Os02t0140300-01 (EC:2.8.1.12)
Chr02	irgsp1_rep	five_prime_UTR	2160093	2160310	.	+	.	Parent=Os02t0140300-01
Chr02	irgsp1_rep	CDS	2160311	2160892	.	+	0	Parent=Os02t0140300-01
Chr02	irgsp1_rep	three_prime_UTR	2160893	2161047	.	+	.	Parent=Os02t0140300-01
Chr02	irgsp1_rep	mRNA	2161770	2166648	.	-	.	ID=Os02t0140400-01;Name=Os02t0140400-01;Locus_id=Os02g0140400;CGSNL Gene Symbol=OSC4;CGSNL Gene Name=OXIDOSQUALENE CYCLASE 4;Oryzabase Gene Symbol Synonym(s)=OsOSC4;Oryzabase Gene Name Synonym(s)=oxidosqualene cyclase 4;Note=Similar to Beta-amyrin synthase.;Transcript_evidence=AK106822 (DDBJ%2C Best hit);ORF_evidence=B7EC78 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: intramolecular transferase activity (GO:0016866);InterPro=Prenyltransferase/squalene oxidase (IPR001330),Terpene synthase%2C conserved site (IPR002365),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930),Squalene cyclase (IPR018333);NIAS_FLcDNA=002-116-E04;Oryzabase=17982;Expression=AK106822;TENOR=Os02t0140400-01;KEGG=Os02t0140400-01
Chr02	irgsp1_rep	five_prime_UTR	2166567	2166648	.	-	.	Parent=Os02t0140400-01
Chr02	irgsp1_rep	five_prime_UTR	2166356	2166458	.	-	.	Parent=Os02t0140400-01
Chr02	irgsp1_rep	CDS	2166272	2166355	.	-	0	Parent=Os02t0140400-01
Chr02	irgsp1_rep	CDS	2165959	2166072	.	-	0	Parent=Os02t0140400-01
Chr02	irgsp1_rep	CDS	2165496	2165618	.	-	0	Parent=Os02t0140400-01
Chr02	irgsp1_rep	CDS	2165286	2165408	.	-	0	Parent=Os02t0140400-01
Chr02	irgsp1_rep	CDS	2165021	2165119	.	-	0	Parent=Os02t0140400-01
Chr02	irgsp1_rep	CDS	2164520	2164576	.	-	0	Parent=Os02t0140400-01
Chr02	irgsp1_rep	CDS	2164194	2164240	.	-	0	Parent=Os02t0140400-01
Chr02	irgsp1_rep	CDS	2163946	2164089	.	-	1	Parent=Os02t0140400-01
Chr02	irgsp1_rep	CDS	2163690	2163867	.	-	1	Parent=Os02t0140400-01
Chr02	irgsp1_rep	CDS	2162931	2163047	.	-	0	Parent=Os02t0140400-01
Chr02	irgsp1_rep	CDS	2162763	2162846	.	-	0	Parent=Os02t0140400-01
Chr02	irgsp1_rep	CDS	2162015	2162134	.	-	0	Parent=Os02t0140400-01
Chr02	irgsp1_rep	three_prime_UTR	2161770	2162014	.	-	.	Parent=Os02t0140400-01
Chr02	irgsp1_rep	mRNA	2177575	2178755	.	-	.	ID=Os02t0140500-00;Name=Os02t0140500-00;Locus_id=Os02g0140500;CGSNL Gene Symbol=OSC4;CGSNL Gene Name=OXIDOSQUALENE CYCLASE 4;Oryzabase Gene Symbol Synonym(s)=OsOSC4;Oryzabase Gene Name Synonym(s)=oxidosqualene cyclase 4;Note=Similar to cycloartenol synthase.;Transcript_evidence=CT829686 (DDBJ%2C Best hit);ORF_evidence=NP_001152006.1 (RefSeq);InterPro=Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930);Oryzabase=17982;TENOR=Os02t0140500-00
Chr02	irgsp1_rep	five_prime_UTR	2178635	2178755	.	-	.	Parent=Os02t0140500-00
Chr02	irgsp1_rep	CDS	2178438	2178634	.	-	0	Parent=Os02t0140500-00
Chr02	irgsp1_rep	CDS	2177846	2177918	.	-	1	Parent=Os02t0140500-00
Chr02	irgsp1_rep	three_prime_UTR	2177575	2177845	.	-	.	Parent=Os02t0140500-00
Chr02	irgsp1_rep	mRNA	2192036	2193602	.	+	.	ID=Os02t0140800-00;Name=Os02t0140800-00;Locus_id=Os02g0140800;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001045855.2 (RefSeq);TENOR=Os02t0140800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	2192036	2192185	.	+	0	Parent=Os02t0140800-00
Chr02	irgsp1_rep	CDS	2192221	2192310	.	+	0	Parent=Os02t0140800-00
Chr02	irgsp1_rep	CDS	2192452	2192730	.	+	0	Parent=Os02t0140800-00
Chr02	irgsp1_rep	CDS	2192768	2192921	.	+	0	Parent=Os02t0140800-00
Chr02	irgsp1_rep	CDS	2193010	2193602	.	+	2	Parent=Os02t0140800-00
Chr02	irgsp1_rep	mRNA	2205767	2207522	.	+	.	ID=Os02t0141000-01;Name=Os02t0141000-01;Locus_id=Os02g0141000;Note=Butirosin biosynthesis%2C BtrG-like domain containing protein.;Transcript_evidence=AK121058 (DDBJ%2C Best hit);ORF_evidence=NP_001150494.1 (RefSeq);InterPro=AIG2-like (IPR009288),Butirosin biosynthesis%2C BtrG-like (IPR013024);NIAS_FLcDNA=J023056J21;Expression=AK121058;TENOR=Os02t0141000-01;KEGG=Os02t0141000-01
Chr02	irgsp1_rep	five_prime_UTR	2205767	2205817	.	+	.	Parent=Os02t0141000-01
Chr02	irgsp1_rep	CDS	2205818	2205936	.	+	0	Parent=Os02t0141000-01
Chr02	irgsp1_rep	CDS	2206031	2206103	.	+	1	Parent=Os02t0141000-01
Chr02	irgsp1_rep	CDS	2206264	2206356	.	+	0	Parent=Os02t0141000-01
Chr02	irgsp1_rep	CDS	2206558	2206641	.	+	0	Parent=Os02t0141000-01
Chr02	irgsp1_rep	CDS	2207206	2207298	.	+	0	Parent=Os02t0141000-01
Chr02	irgsp1_rep	three_prime_UTR	2207299	2207522	.	+	.	Parent=Os02t0141000-01
Chr02	irgsp1_rep	mRNA	2207998	2214514	.	-	.	ID=Os02t0141100-00;Name=Os02t0141100-00;Locus_id=Os02g0141100;CGSNL Gene Symbol=ARF5;CGSNL Gene Name=AUXIN RESPONSE FACTOR 5;Oryzabase Gene Symbol Synonym(s)=OsARF5;Oryzabase Gene Name Synonym(s)=auxin response factor-5%2C auxin response factor 5;Note=Similar to Auxin response factor 5.;Transcript_evidence=AK369713 (DDBJ);ORF_evidence=Q6Z2W3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: response to hormone stimulus (GO:0009725),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Transcriptional factor B3 (IPR003340),Auxin response factor (IPR010525),Aux/IAA-ARF-dimerisation (IPR011525),DNA-binding pseudobarrel domain (IPR015300);Oryzabase=10005;TENOR=Os02t0141100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	2214489	2214514	.	-	.	Parent=Os02t0141100-00
Chr02	irgsp1_rep	CDS	2214348	2214488	.	-	0	Parent=Os02t0141100-00
Chr02	irgsp1_rep	CDS	2212940	2213038	.	-	0	Parent=Os02t0141100-00
Chr02	irgsp1_rep	CDS	2212797	2212853	.	-	0	Parent=Os02t0141100-00
Chr02	irgsp1_rep	CDS	2212565	2212720	.	-	0	Parent=Os02t0141100-00
Chr02	irgsp1_rep	CDS	2212396	2212480	.	-	0	Parent=Os02t0141100-00
Chr02	irgsp1_rep	CDS	2211940	2212030	.	-	2	Parent=Os02t0141100-00
Chr02	irgsp1_rep	CDS	2211650	2211814	.	-	1	Parent=Os02t0141100-00
Chr02	irgsp1_rep	CDS	2211409	2211531	.	-	1	Parent=Os02t0141100-00
Chr02	irgsp1_rep	CDS	2211195	2211270	.	-	1	Parent=Os02t0141100-00
Chr02	irgsp1_rep	CDS	2210980	2211109	.	-	0	Parent=Os02t0141100-00
Chr02	irgsp1_rep	CDS	2208772	2210609	.	-	2	Parent=Os02t0141100-00
Chr02	irgsp1_rep	CDS	2208484	2208674	.	-	0	Parent=Os02t0141100-00
Chr02	irgsp1_rep	CDS	2208021	2208219	.	-	1	Parent=Os02t0141100-00
Chr02	irgsp1_rep	three_prime_UTR	2207998	2208020	.	-	.	Parent=Os02t0141100-00
Chr02	irgsp1_rep	mRNA	2215658	2219485	.	-	.	ID=Os02t0141201-01;Name=Os02t0141201-01;Locus_id=Os02g0141201;Note=Conserved hypothetical protein.;Transcript_evidence=AK288328 (DDBJ%2C Best hit);ORF_evidence=A2ZIV8 (UniProt);NIAS_FLcDNA=J090022I04;TENOR=Os02t0141201-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	2216710	2219485	.	-	.	Parent=Os02t0141201-01
Chr02	irgsp1_rep	CDS	2216605	2216709	.	-	0	Parent=Os02t0141201-01
Chr02	irgsp1_rep	three_prime_UTR	2215658	2216604	.	-	.	Parent=Os02t0141201-01
Chr02	irgsp1_rep	mRNA	2231145	2239224	.	-	.	ID=Os02t0141300-01;Name=Os02t0141300-01;Locus_id=Os02g0141300;RAP-DB Gene Symbol Synonym(s)=CAP1;RAP-DB Gene Name Synonym(s)=COLLAPSED ABNORMAL POLLEN1;CGSNL Gene Symbol=CAP1;CGSNL Gene Name=COLLAPSED ABNORMAL POLLEN1;Note=Arabinokinase-Like Protein%2C Pollen development;Transcript_evidence=AK067279;ORF_evidence=Q6YX79;GO=Biological Process: metabolic process (GO:0008152),Molecular Function: ATP binding (GO:0005524),Molecular Function: kinase activity (GO:0016301),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773),Cellular Component: cytoplasm (GO:0005737);InterPro=Mevalonate/galactokinase (IPR006206),Galactokinase%2C glycosyltransferase (IPR012369),Galactokinase galactose-binding domain (IPR019539),Ribosomal protein S5 domain 2-type fold (IPR020568),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),GHMP kinase N-terminal domain (IPR006204),GHMP kinase%2C C-terminal domain (IPR013750);Manual Curation=March 6%2C 2014;Literature_PMID=23629836;Oryzabase=11811;TENOR=Os02t0141300-01
Chr02	irgsp1_rep	five_prime_UTR	2239145	2239224	.	-	.	Parent=Os02t0141300-01
Chr02	irgsp1_rep	CDS	2239010	2239144	.	-	0	Parent=Os02t0141300-01
Chr02	irgsp1_rep	CDS	2238652	2238828	.	-	0	Parent=Os02t0141300-01
Chr02	irgsp1_rep	CDS	2238433	2238516	.	-	0	Parent=Os02t0141300-01
Chr02	irgsp1_rep	CDS	2238233	2238309	.	-	0	Parent=Os02t0141300-01
Chr02	irgsp1_rep	CDS	2237684	2237750	.	-	1	Parent=Os02t0141300-01
Chr02	irgsp1_rep	CDS	2237412	2237469	.	-	0	Parent=Os02t0141300-01
Chr02	irgsp1_rep	CDS	2237258	2237325	.	-	2	Parent=Os02t0141300-01
Chr02	irgsp1_rep	CDS	2237106	2237168	.	-	0	Parent=Os02t0141300-01
Chr02	irgsp1_rep	CDS	2236789	2236842	.	-	0	Parent=Os02t0141300-01
Chr02	irgsp1_rep	CDS	2236587	2236689	.	-	0	Parent=Os02t0141300-01
Chr02	irgsp1_rep	CDS	2236387	2236496	.	-	2	Parent=Os02t0141300-01
Chr02	irgsp1_rep	CDS	2236159	2236278	.	-	0	Parent=Os02t0141300-01
Chr02	irgsp1_rep	CDS	2235823	2235879	.	-	0	Parent=Os02t0141300-01
Chr02	irgsp1_rep	CDS	2235251	2235414	.	-	0	Parent=Os02t0141300-01
Chr02	irgsp1_rep	CDS	2234985	2235144	.	-	1	Parent=Os02t0141300-01
Chr02	irgsp1_rep	CDS	2234804	2234887	.	-	0	Parent=Os02t0141300-01
Chr02	irgsp1_rep	CDS	2234264	2234386	.	-	0	Parent=Os02t0141300-01
Chr02	irgsp1_rep	CDS	2233961	2234091	.	-	0	Parent=Os02t0141300-01
Chr02	irgsp1_rep	CDS	2233805	2233886	.	-	1	Parent=Os02t0141300-01
Chr02	irgsp1_rep	CDS	2233435	2233522	.	-	0	Parent=Os02t0141300-01
Chr02	irgsp1_rep	CDS	2233237	2233280	.	-	2	Parent=Os02t0141300-01
Chr02	irgsp1_rep	CDS	2233056	2233151	.	-	0	Parent=Os02t0141300-01
Chr02	irgsp1_rep	CDS	2232873	2232949	.	-	0	Parent=Os02t0141300-01
Chr02	irgsp1_rep	CDS	2232543	2232758	.	-	1	Parent=Os02t0141300-01
Chr02	irgsp1_rep	CDS	2232293	2232458	.	-	1	Parent=Os02t0141300-01
Chr02	irgsp1_rep	CDS	2231945	2232016	.	-	0	Parent=Os02t0141300-01
Chr02	irgsp1_rep	CDS	2231646	2231849	.	-	0	Parent=Os02t0141300-01
Chr02	irgsp1_rep	CDS	2231383	2231493	.	-	0	Parent=Os02t0141300-01
Chr02	irgsp1_rep	three_prime_UTR	2231145	2231382	.	-	.	Parent=Os02t0141300-01
Chr02	irgsp1_rep	mRNA	2241066	2242600	.	-	.	ID=Os02t0141400-01;Name=Os02t0141400-01;Locus_id=Os02g0141400;Note=Protein of unknown function DUF1677%2C Oryza sativa family protein.;Transcript_evidence=AK106374 (DDBJ%2C Best hit);ORF_evidence=B8AHF3 (UniProt);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);NIAS_FLcDNA=002-102-D01;Expression=AK106374;TENOR=Os02t0141400-01;KEGG=Os02t0141400-01
Chr02	irgsp1_rep	five_prime_UTR	2242509	2242600	.	-	.	Parent=Os02t0141400-01
Chr02	irgsp1_rep	CDS	2241228	2242508	.	-	0	Parent=Os02t0141400-01
Chr02	irgsp1_rep	three_prime_UTR	2241066	2241227	.	-	.	Parent=Os02t0141400-01
Chr02	irgsp1_rep	mRNA	2242956	2246169	.	-	.	ID=Os02t0141500-01;Name=Os02t0141500-01;Locus_id=Os02g0141500;Note=Conserved hypothetical protein.;Transcript_evidence=AK099428 (DDBJ%2C Best hit);ORF_evidence=B9F2N5 (UniProt);NIAS_FLcDNA=J013011N11;Expression=AK099428;TENOR=Os02t0141500-01;KEGG=Os02t0141500-01
Chr02	irgsp1_rep	five_prime_UTR	2245989	2246169	.	-	.	Parent=Os02t0141500-01
Chr02	irgsp1_rep	CDS	2245887	2245988	.	-	0	Parent=Os02t0141500-01
Chr02	irgsp1_rep	CDS	2244232	2244496	.	-	0	Parent=Os02t0141500-01
Chr02	irgsp1_rep	CDS	2243295	2243614	.	-	2	Parent=Os02t0141500-01
Chr02	irgsp1_rep	three_prime_UTR	2242956	2243294	.	-	.	Parent=Os02t0141500-01
Chr02	irgsp1_rep	mRNA	2274553	2275429	.	+	.	ID=Os02t0142060-01;Name=Os02t0142060-01;Locus_id=Os02g0142060;Note=Conserved hypothetical protein.;Transcript_evidence=AK241289 (DDBJ%2C Best hit);ORF_evidence=Q6YWG4 (UniProt);NIAS_FLcDNA=J065137N15;TENOR=Os02t0142060-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	2274553	2274915	.	+	.	Parent=Os02t0142060-01
Chr02	irgsp1_rep	CDS	2274916	2275206	.	+	0	Parent=Os02t0142060-01
Chr02	irgsp1_rep	three_prime_UTR	2275207	2275429	.	+	.	Parent=Os02t0142060-01
Chr02	irgsp1_rep	mRNA	2277044	2279841	.	+	.	ID=Os02t0142100-01;Name=Os02t0142100-01;Locus_id=Os02g0142100;Note=Similar to H0102C09.1 protein.;Transcript_evidence=AK069573 (DDBJ%2C Best hit);ORF_evidence=Q25AL5 (UniProt);NIAS_FLcDNA=J023022E20;Expression=AK069573;TENOR=Os02t0142100-01;KEGG=Os02t0142100-01
Chr02	irgsp1_rep	five_prime_UTR	2277044	2277681	.	+	.	Parent=Os02t0142100-01
Chr02	irgsp1_rep	CDS	2277682	2278107	.	+	0	Parent=Os02t0142100-01
Chr02	irgsp1_rep	three_prime_UTR	2278108	2279207	.	+	.	Parent=Os02t0142100-01
Chr02	irgsp1_rep	three_prime_UTR	2279387	2279841	.	+	.	Parent=Os02t0142100-01
Chr02	irgsp1_rep	mRNA	2312299	2317211	.	-	.	ID=Os02t0142250-00;Name=Os02t0142250-00;Locus_id=Os02g0142250;Note=Similar to J013125B21%2C full insert sequence.;Transcript_evidence=tplb0046o17 (Wheat FLcDNA);ORF_evidence=B7EE59 (UniProt);TENOR=Os02t0142250-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	2317161	2317211	.	-	.	Parent=Os02t0142250-00
Chr02	irgsp1_rep	CDS	2317108	2317160	.	-	0	Parent=Os02t0142250-00
Chr02	irgsp1_rep	CDS	2316570	2316682	.	-	1	Parent=Os02t0142250-00
Chr02	irgsp1_rep	CDS	2316234	2316422	.	-	2	Parent=Os02t0142250-00
Chr02	irgsp1_rep	CDS	2316013	2316117	.	-	2	Parent=Os02t0142250-00
Chr02	irgsp1_rep	CDS	2315661	2315731	.	-	2	Parent=Os02t0142250-00
Chr02	irgsp1_rep	CDS	2315503	2315559	.	-	0	Parent=Os02t0142250-00
Chr02	irgsp1_rep	three_prime_UTR	2315485	2315502	.	-	.	Parent=Os02t0142250-00
Chr02	irgsp1_rep	three_prime_UTR	2315185	2315411	.	-	.	Parent=Os02t0142250-00
Chr02	irgsp1_rep	three_prime_UTR	2314841	2315030	.	-	.	Parent=Os02t0142250-00
Chr02	irgsp1_rep	three_prime_UTR	2313339	2313403	.	-	.	Parent=Os02t0142250-00
Chr02	irgsp1_rep	three_prime_UTR	2313136	2313224	.	-	.	Parent=Os02t0142250-00
Chr02	irgsp1_rep	three_prime_UTR	2312927	2313041	.	-	.	Parent=Os02t0142250-00
Chr02	irgsp1_rep	three_prime_UTR	2312790	2312841	.	-	.	Parent=Os02t0142250-00
Chr02	irgsp1_rep	three_prime_UTR	2312614	2312714	.	-	.	Parent=Os02t0142250-00
Chr02	irgsp1_rep	three_prime_UTR	2312299	2312516	.	-	.	Parent=Os02t0142250-00
Chr02	irgsp1_rep	mRNA	2318214	2323337	.	-	.	ID=Os02t0142300-01;Name=Os02t0142300-01;Locus_id=Os02g0142300;Note=Conserved hypothetical protein.;Transcript_evidence=AK067944 (DDBJ%2C Best hit);ORF_evidence=A3A338 (UniProt);NIAS_FLcDNA=J013123M24;TENOR=Os02t0142300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	2322949	2323337	.	-	.	Parent=Os02t0142300-01
Chr02	irgsp1_rep	CDS	2322562	2322948	.	-	0	Parent=Os02t0142300-01
Chr02	irgsp1_rep	three_prime_UTR	2319501	2322561	.	-	.	Parent=Os02t0142300-01
Chr02	irgsp1_rep	three_prime_UTR	2318214	2318614	.	-	.	Parent=Os02t0142300-01
Chr02	irgsp1_rep	mRNA	2325414	2328080	.	+	.	ID=Os02t0142400-01;Name=Os02t0142400-01;Locus_id=Os02g0142400;Note=Conserved hypothetical protein.;Transcript_evidence=AK106722 (DDBJ%2C Best hit);ORF_evidence=B8AHF7 (UniProt);NIAS_FLcDNA=002-114-G09;TENOR=Os02t0142400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	2325414	2325505	.	+	.	Parent=Os02t0142400-01
Chr02	irgsp1_rep	CDS	2325506	2326070	.	+	0	Parent=Os02t0142400-01
Chr02	irgsp1_rep	CDS	2326751	2326896	.	+	2	Parent=Os02t0142400-01
Chr02	irgsp1_rep	three_prime_UTR	2326897	2328080	.	+	.	Parent=Os02t0142400-01
Chr02	irgsp1_rep	mRNA	2331669	2345472	.	-	.	ID=Os02t0142450-01;Name=Os02t0142450-01;Locus_id=Os02g0142450;Note=Hypothetical gene.;Transcript_evidence=AK240665 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033039J23;TENOR=Os02t0142450-01;KEGG=Os02t0142450-01
Chr02	irgsp1_rep	five_prime_UTR	2345163	2345472	.	-	.	Parent=Os02t0142450-01
Chr02	irgsp1_rep	five_prime_UTR	2344894	2345067	.	-	.	Parent=Os02t0142450-01
Chr02	irgsp1_rep	five_prime_UTR	2344658	2344807	.	-	.	Parent=Os02t0142450-01
Chr02	irgsp1_rep	five_prime_UTR	2344470	2344577	.	-	.	Parent=Os02t0142450-01
Chr02	irgsp1_rep	five_prime_UTR	2344254	2344305	.	-	.	Parent=Os02t0142450-01
Chr02	irgsp1_rep	CDS	2344188	2344253	.	-	0	Parent=Os02t0142450-01
Chr02	irgsp1_rep	CDS	2343964	2344029	.	-	0	Parent=Os02t0142450-01
Chr02	irgsp1_rep	CDS	2343764	2343869	.	-	0	Parent=Os02t0142450-01
Chr02	irgsp1_rep	CDS	2343627	2343667	.	-	2	Parent=Os02t0142450-01
Chr02	irgsp1_rep	three_prime_UTR	2343536	2343626	.	-	.	Parent=Os02t0142450-01
Chr02	irgsp1_rep	three_prime_UTR	2343144	2343453	.	-	.	Parent=Os02t0142450-01
Chr02	irgsp1_rep	three_prime_UTR	2342997	2343065	.	-	.	Parent=Os02t0142450-01
Chr02	irgsp1_rep	three_prime_UTR	2342023	2342366	.	-	.	Parent=Os02t0142450-01
Chr02	irgsp1_rep	three_prime_UTR	2341877	2341947	.	-	.	Parent=Os02t0142450-01
Chr02	irgsp1_rep	three_prime_UTR	2340532	2340719	.	-	.	Parent=Os02t0142450-01
Chr02	irgsp1_rep	three_prime_UTR	2340157	2340419	.	-	.	Parent=Os02t0142450-01
Chr02	irgsp1_rep	three_prime_UTR	2339252	2339414	.	-	.	Parent=Os02t0142450-01
Chr02	irgsp1_rep	three_prime_UTR	2338279	2338847	.	-	.	Parent=Os02t0142450-01
Chr02	irgsp1_rep	three_prime_UTR	2337989	2338181	.	-	.	Parent=Os02t0142450-01
Chr02	irgsp1_rep	three_prime_UTR	2337700	2337882	.	-	.	Parent=Os02t0142450-01
Chr02	irgsp1_rep	three_prime_UTR	2337138	2337258	.	-	.	Parent=Os02t0142450-01
Chr02	irgsp1_rep	three_prime_UTR	2336661	2336758	.	-	.	Parent=Os02t0142450-01
Chr02	irgsp1_rep	three_prime_UTR	2336366	2336470	.	-	.	Parent=Os02t0142450-01
Chr02	irgsp1_rep	three_prime_UTR	2335003	2335085	.	-	.	Parent=Os02t0142450-01
Chr02	irgsp1_rep	three_prime_UTR	2333880	2334037	.	-	.	Parent=Os02t0142450-01
Chr02	irgsp1_rep	three_prime_UTR	2333392	2333454	.	-	.	Parent=Os02t0142450-01
Chr02	irgsp1_rep	three_prime_UTR	2333045	2333307	.	-	.	Parent=Os02t0142450-01
Chr02	irgsp1_rep	three_prime_UTR	2332827	2332959	.	-	.	Parent=Os02t0142450-01
Chr02	irgsp1_rep	three_prime_UTR	2331669	2331987	.	-	.	Parent=Os02t0142450-01
Chr02	irgsp1_rep	mRNA	2343538	2345234	.	+	.	ID=Os02t0142500-00;Name=Os02t0142500-00;Locus_id=Os02g0142500;Note=Similar to SAR1 (SUPPRESSOR OF AUXIN RESISTANCE1).;Transcript_evidence=BT069992 (DDBJ);ORF_evidence=NP_174607.1 (RefSeq);TENOR=Os02t0142500-00;KEGG=Os02t0142500-00
Chr02	irgsp1_rep	five_prime_UTR	2343538	2343667	.	+	.	Parent=Os02t0142500-00
Chr02	irgsp1_rep	five_prime_UTR	2343764	2343865	.	+	.	Parent=Os02t0142500-00
Chr02	irgsp1_rep	CDS	2343866	2343869	.	+	0	Parent=Os02t0142500-00
Chr02	irgsp1_rep	CDS	2343964	2344033	.	+	2	Parent=Os02t0142500-00
Chr02	irgsp1_rep	CDS	2344188	2344305	.	+	1	Parent=Os02t0142500-00
Chr02	irgsp1_rep	CDS	2344470	2344577	.	+	0	Parent=Os02t0142500-00
Chr02	irgsp1_rep	CDS	2344658	2344807	.	+	0	Parent=Os02t0142500-00
Chr02	irgsp1_rep	CDS	2344894	2345067	.	+	0	Parent=Os02t0142500-00
Chr02	irgsp1_rep	CDS	2345163	2345234	.	+	0	Parent=Os02t0142500-00
Chr02	irgsp1_rep	mRNA	2368844	2370387	.	-	.	ID=Os02t0142750-01;Name=Os02t0142750-01;Locus_id=Os02g0142750;Note=Hypothetical gene.;Transcript_evidence=AK110800 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-171-E06;Expression=AK110800;TENOR=Os02t0142750-01;KEGG=Os02t0142750-01
Chr02	irgsp1_rep	five_prime_UTR	2370227	2370387	.	-	.	Parent=Os02t0142750-01
Chr02	irgsp1_rep	CDS	2369999	2370226	.	-	0	Parent=Os02t0142750-01
Chr02	irgsp1_rep	three_prime_UTR	2368844	2369998	.	-	.	Parent=Os02t0142750-01
Chr02	irgsp1_rep	mRNA	2369616	2371348	.	+	.	ID=Os02t0142800-01;Name=Os02t0142800-01;Locus_id=Os02g0142800;Note=Protein of unknown function DUF1677%2C Oryza sativa family protein.;Transcript_evidence=AK068189 (DDBJ%2C Best hit);ORF_evidence=B8AHF8 (UniProt);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);NIAS_FLcDNA=J013135F21;Expression=AK068189;TENOR=Os02t0142800-01;KEGG=Os02t0142800-01
Chr02	irgsp1_rep	five_prime_UTR	2369616	2370033	.	+	.	Parent=Os02t0142800-01
Chr02	irgsp1_rep	CDS	2370034	2371077	.	+	0	Parent=Os02t0142800-01
Chr02	irgsp1_rep	three_prime_UTR	2371078	2371348	.	+	.	Parent=Os02t0142800-01
Chr02	irgsp1_rep	mRNA	2372150	2373061	.	-	.	ID=Os02t0142850-01;Name=Os02t0142850-01;Locus_id=Os02g0142850;Note=Non-protein coding transcript.;Transcript_evidence=AK242768 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090053D21;TENOR=Os02t0142850-01
Chr02	irgsp1_rep	exon	2372150	2373061	.	-	.	Parent=Os02t0142850-01
Chr02	irgsp1_rep	mRNA	2372240	2374416	.	+	.	ID=Os02t0142875-00;Name=Os02t0142875-00;Locus_id=Os02g0142875;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os02t0142875-00
Chr02	irgsp1_rep	CDS	2372240	2372333	.	+	0	Parent=Os02t0142875-00
Chr02	irgsp1_rep	CDS	2372395	2372489	.	+	2	Parent=Os02t0142875-00
Chr02	irgsp1_rep	CDS	2374318	2374416	.	+	0	Parent=Os02t0142875-00
Chr02	irgsp1_rep	mRNA	2386654	2387525	.	+	.	ID=Os02t0142950-00;Name=Os02t0142950-00;Locus_id=Os02g0142950;Note=Similar to SAR1 (suppressor of auxin resistance1).;Transcript_evidence=BT069992 (DDBJ);ORF_evidence=NP_174607.1 (RefSeq);TENOR=Os02t0142950-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	2386654	2386748	.	+	.	Parent=Os02t0142950-00
Chr02	irgsp1_rep	CDS	2386749	2386762	.	+	0	Parent=Os02t0142950-00
Chr02	irgsp1_rep	CDS	2386874	2387024	.	+	1	Parent=Os02t0142950-00
Chr02	irgsp1_rep	CDS	2387111	2387284	.	+	0	Parent=Os02t0142950-00
Chr02	irgsp1_rep	CDS	2387378	2387449	.	+	0	Parent=Os02t0142950-00
Chr02	irgsp1_rep	three_prime_UTR	2387450	2387525	.	+	.	Parent=Os02t0142950-00
Chr02	irgsp1_rep	mRNA	2388400	2394345	.	+	.	ID=Os02t0143100-01;Name=Os02t0143100-01;Locus_id=Os02g0143100;Note=Similar to Sucrose-phosphatase (EC 3.1.3.24).;Transcript_evidence=AK063330 (DDBJ%2C Best hit);ORF_evidence=Q6YXW6 (UniProt);GO=Biological Process: sucrose biosynthetic process (GO:0005986),Biological Process: metabolic process (GO:0008152),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphatase activity (GO:0016791),Molecular Function: sucrose-phosphate phosphatase activity (GO:0050307);InterPro=Sucrose-phosphate phosphatase (IPR006378),HAD-superfamily hydrolase%2C subfamily IIB (IPR006379),Sucrose-phosphate synthase (IPR006380),Sucrose phosphatase%2C plant/cyanobacteria (IPR012847),Sucrose-6-phosphate phosphohydrolase C-terminal (IPR013679),HAD-like domain (IPR023214);NIAS_FLcDNA=001-114-A01;Expression=AK063330;TENOR=Os02t0143100-01;KEGG=Os02t0143100-01 (EC:3.1.3.24)
Chr02	irgsp1_rep	five_prime_UTR	2388400	2388535	.	+	.	Parent=Os02t0143100-01
Chr02	irgsp1_rep	five_prime_UTR	2390254	2390262	.	+	.	Parent=Os02t0143100-01
Chr02	irgsp1_rep	CDS	2390263	2390322	.	+	0	Parent=Os02t0143100-01
Chr02	irgsp1_rep	CDS	2390418	2390717	.	+	0	Parent=Os02t0143100-01
Chr02	irgsp1_rep	CDS	2390831	2390932	.	+	0	Parent=Os02t0143100-01
Chr02	irgsp1_rep	CDS	2391087	2391281	.	+	0	Parent=Os02t0143100-01
Chr02	irgsp1_rep	CDS	2391379	2391666	.	+	0	Parent=Os02t0143100-01
Chr02	irgsp1_rep	CDS	2391944	2392130	.	+	0	Parent=Os02t0143100-01
Chr02	irgsp1_rep	CDS	2393780	2393826	.	+	2	Parent=Os02t0143100-01
Chr02	irgsp1_rep	CDS	2393984	2394076	.	+	0	Parent=Os02t0143100-01
Chr02	irgsp1_rep	three_prime_UTR	2394077	2394345	.	+	.	Parent=Os02t0143100-01
Chr02	irgsp1_rep	mRNA	2397461	2404964	.	+	.	ID=Os02t0143200-01;Name=Os02t0143200-01;Locus_id=Os02g0143200;Oryzabase Gene Name Synonym(s)=SRL2-like gene%2C semi-rolled leaf 2-like gene;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=AK070600 (DDBJ%2C Best hit);ORF_evidence=B9F2P0 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023055D09;Oryzabase=20947;Expression=AK070600;TENOR=Os02t0143200-01;KEGG=Os02t0143200-01
Chr02	irgsp1_rep	five_prime_UTR	2397461	2397649	.	+	.	Parent=Os02t0143200-01
Chr02	irgsp1_rep	CDS	2397650	2397814	.	+	0	Parent=Os02t0143200-01
Chr02	irgsp1_rep	CDS	2398369	2398443	.	+	0	Parent=Os02t0143200-01
Chr02	irgsp1_rep	CDS	2398862	2398977	.	+	0	Parent=Os02t0143200-01
Chr02	irgsp1_rep	CDS	2399157	2399271	.	+	1	Parent=Os02t0143200-01
Chr02	irgsp1_rep	CDS	2399362	2399490	.	+	0	Parent=Os02t0143200-01
Chr02	irgsp1_rep	CDS	2399811	2399858	.	+	0	Parent=Os02t0143200-01
Chr02	irgsp1_rep	CDS	2400371	2400552	.	+	0	Parent=Os02t0143200-01
Chr02	irgsp1_rep	CDS	2400630	2400826	.	+	1	Parent=Os02t0143200-01
Chr02	irgsp1_rep	CDS	2400918	2401204	.	+	2	Parent=Os02t0143200-01
Chr02	irgsp1_rep	CDS	2401391	2401540	.	+	0	Parent=Os02t0143200-01
Chr02	irgsp1_rep	CDS	2401635	2402096	.	+	0	Parent=Os02t0143200-01
Chr02	irgsp1_rep	CDS	2402203	2402352	.	+	0	Parent=Os02t0143200-01
Chr02	irgsp1_rep	CDS	2402614	2402689	.	+	0	Parent=Os02t0143200-01
Chr02	irgsp1_rep	CDS	2402853	2402980	.	+	2	Parent=Os02t0143200-01
Chr02	irgsp1_rep	CDS	2403246	2403437	.	+	0	Parent=Os02t0143200-01
Chr02	irgsp1_rep	CDS	2403561	2403692	.	+	0	Parent=Os02t0143200-01
Chr02	irgsp1_rep	CDS	2403769	2403891	.	+	0	Parent=Os02t0143200-01
Chr02	irgsp1_rep	CDS	2404130	2404348	.	+	0	Parent=Os02t0143200-01
Chr02	irgsp1_rep	CDS	2404520	2404681	.	+	0	Parent=Os02t0143200-01
Chr02	irgsp1_rep	three_prime_UTR	2404682	2404964	.	+	.	Parent=Os02t0143200-01
Chr02	irgsp1_rep	mRNA	2406632	2407019	.	+	.	ID=Os02t0143300-00;Name=Os02t0143300-00;Locus_id=Os02g0143300;CGSNL Gene Symbol=SAUR4;CGSNL Gene Name=SMALL AUXIN-UP RNA 4;Oryzabase Gene Symbol Synonym(s)=OsSAUR4;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 4;Note=Similar to SAUR family protein.;Transcript_evidence=FP092583 (DDBJ);ORF_evidence=XP_002327252.1 (RefSeq);InterPro=Auxin responsive SAUR protein (IPR003676);Oryzabase=9129;TENOR=Os02t0143300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	2406632	2406650	.	+	.	Parent=Os02t0143300-00
Chr02	irgsp1_rep	CDS	2406651	2407019	.	+	0	Parent=Os02t0143300-00
Chr02	irgsp1_rep	mRNA	2409033	2409537	.	+	.	ID=Os02t0143350-00;Name=Os02t0143350-00;Locus_id=Os02g0143350;Note=Hypothetical gene.;Transcript_evidence=EU949962 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0143350-00;KEGG=Os02t0143350-00
Chr02	irgsp1_rep	five_prime_UTR	2409033	2409128	.	+	.	Parent=Os02t0143350-00
Chr02	irgsp1_rep	CDS	2409129	2409380	.	+	0	Parent=Os02t0143350-00
Chr02	irgsp1_rep	three_prime_UTR	2409381	2409537	.	+	.	Parent=Os02t0143350-00
Chr02	irgsp1_rep	mRNA	2408927	2409319	.	-	.	ID=Os02t0143400-00;Name=Os02t0143400-00;Locus_id=Os02g0143400;CGSNL Gene Symbol=SAUR5;CGSNL Gene Name=SMALL AUXIN-UP RNA 5;Oryzabase Gene Symbol Synonym(s)=OsSAUR5;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 5;Note=Similar to small auxin up RNA1.;Transcript_evidence=AF148498 (DDBJ);ORF_evidence=NP_001105573.1 (RefSeq);InterPro=Auxin responsive SAUR protein (IPR003676);Oryzabase=9130;TENOR=Os02t0143400-00
Chr02	irgsp1_rep	CDS	2408927	2409319	.	-	0	Parent=Os02t0143400-00
Chr02	irgsp1_rep	mRNA	2444421	2445497	.	+	.	ID=Os02t0144200-00;Name=Os02t0144200-00;Locus_id=Os02g0144200;Note=Protein of unknown function DUF1677%2C Oryza sativa family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001172799.1 (RefSeq);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);TENOR=Os02t0144200-00;KEGG=Os02t0144200-00
Chr02	irgsp1_rep	CDS	2444421	2445497	.	+	0	Parent=Os02t0144200-00
Chr02	irgsp1_rep	mRNA	2447941	2451093	.	-	.	ID=Os02t0144300-01;Name=Os02t0144300-01;Locus_id=Os02g0144300;Note=Similar to H0114G12.9 protein.;Transcript_evidence=AK106692 (DDBJ%2C Best hit);ORF_evidence=A8B8B1 (UniProt);NIAS_FLcDNA=002-114-C09;TENOR=Os02t0144300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	2450073	2451093	.	-	.	Parent=Os02t0144300-01
Chr02	irgsp1_rep	CDS	2449950	2450072	.	-	0	Parent=Os02t0144300-01
Chr02	irgsp1_rep	three_prime_UTR	2447941	2449949	.	-	.	Parent=Os02t0144300-01
Chr02	irgsp1_rep	mRNA	2484075	2485154	.	+	.	ID=Os02t0144800-00;Name=Os02t0144800-00;Locus_id=Os02g0144800;Note=Protein of unknown function DUF1677%2C Oryza sativa family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001172800.1 (RefSeq);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);TENOR=Os02t0144800-00;KEGG=Os02t0144800-00
Chr02	irgsp1_rep	CDS	2484075	2485154	.	+	0	Parent=Os02t0144800-00
Chr02	irgsp1_rep	mRNA	2486465	2487405	.	+	.	ID=Os02t0145000-01;Name=Os02t0145000-01;Locus_id=Os02g0145000;Note=Hypothetical gene.;Transcript_evidence=AK060106 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=006-308-C04;TENOR=Os02t0145000-01;KEGG=Os02t0145000-01
Chr02	irgsp1_rep	CDS	2486465	2486812	.	+	0	Parent=Os02t0145000-01
Chr02	irgsp1_rep	three_prime_UTR	2486813	2487405	.	+	.	Parent=Os02t0145000-01
Chr02	irgsp1_rep	mRNA	2486490	2488965	.	+	.	ID=Os02t0145000-02;Name=Os02t0145000-02;Locus_id=Os02g0145000;Note=Similar to calmodulin binding protein.;Transcript_evidence=AK064385 (DDBJ%2C Best hit);ORF_evidence=NP_001150045.1 (RefSeq);NIAS_FLcDNA=002-108-E07;Expression=AK064385;TENOR=Os02t0145000-02;KEGG=Os02t0145000-02
Chr02	irgsp1_rep	five_prime_UTR	2486490	2487952	.	+	.	Parent=Os02t0145000-02
Chr02	irgsp1_rep	five_prime_UTR	2488156	2488317	.	+	.	Parent=Os02t0145000-02
Chr02	irgsp1_rep	five_prime_UTR	2488471	2488706	.	+	.	Parent=Os02t0145000-02
Chr02	irgsp1_rep	CDS	2488707	2488871	.	+	0	Parent=Os02t0145000-02
Chr02	irgsp1_rep	three_prime_UTR	2488872	2488965	.	+	.	Parent=Os02t0145000-02
Chr02	irgsp1_rep	mRNA	2493680	2495010	.	+	.	ID=Os02t0145200-01;Name=Os02t0145200-01;Locus_id=Os02g0145200;Note=Conserved hypothetical protein.;Transcript_evidence=AK104983 (DDBJ%2C Best hit),AK066882 (DDBJ%2C Best hit);ORF_evidence=NP_001174319.1 (RefSeq);NIAS_FLcDNA=002-103-H10,J013085E23;TENOR=Os02t0145200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	2493680	2494288	.	+	.	Parent=Os02t0145200-01
Chr02	irgsp1_rep	CDS	2494289	2494477	.	+	0	Parent=Os02t0145200-01
Chr02	irgsp1_rep	three_prime_UTR	2494478	2495010	.	+	.	Parent=Os02t0145200-01
Chr02	irgsp1_rep	mRNA	2516847	2518586	.	+	.	ID=Os02t0145500-01;Name=Os02t0145500-01;Locus_id=Os02g0145500;Note=Non-protein coding transcript.;Transcript_evidence=AK109742 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-146-E05;TENOR=Os02t0145500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	exon	2516847	2518586	.	+	.	Parent=Os02t0145500-01
Chr02	irgsp1_rep	mRNA	2516879	2519232	.	+	.	ID=Os02t0145500-02;Name=Os02t0145500-02;Locus_id=Os02g0145500;Note=Conserved hypothetical protein.;Transcript_evidence=AK102901 (DDBJ%2C Best hit);ORF_evidence=Q6H7Q0 (UniProt);NIAS_FLcDNA=J033113C20;TENOR=Os02t0145500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	2516879	2517009	.	+	.	Parent=Os02t0145500-02
Chr02	irgsp1_rep	five_prime_UTR	2517125	2518692	.	+	.	Parent=Os02t0145500-02
Chr02	irgsp1_rep	CDS	2518693	2518836	.	+	0	Parent=Os02t0145500-02
Chr02	irgsp1_rep	three_prime_UTR	2518837	2519232	.	+	.	Parent=Os02t0145500-02
Chr02	irgsp1_rep	mRNA	2520355	2522491	.	+	.	ID=Os02t0145600-01;Name=Os02t0145600-01;Locus_id=Os02g0145600;Note=Conserved hypothetical protein.;Transcript_evidence=AK100547 (DDBJ%2C Best hit);ORF_evidence=Q6EUA5 (UniProt);NIAS_FLcDNA=J023102N13;Expression=AK100547;TENOR=Os02t0145600-01;KEGG=Os02t0145600-01
Chr02	irgsp1_rep	five_prime_UTR	2520355	2520590	.	+	.	Parent=Os02t0145600-01
Chr02	irgsp1_rep	CDS	2520591	2521259	.	+	0	Parent=Os02t0145600-01
Chr02	irgsp1_rep	three_prime_UTR	2521260	2521313	.	+	.	Parent=Os02t0145600-01
Chr02	irgsp1_rep	three_prime_UTR	2521404	2521595	.	+	.	Parent=Os02t0145600-01
Chr02	irgsp1_rep	three_prime_UTR	2521685	2521780	.	+	.	Parent=Os02t0145600-01
Chr02	irgsp1_rep	three_prime_UTR	2521869	2522162	.	+	.	Parent=Os02t0145600-01
Chr02	irgsp1_rep	three_prime_UTR	2522261	2522491	.	+	.	Parent=Os02t0145600-01
Chr02	irgsp1_rep	mRNA	2545984	2551064	.	+	.	ID=Os02t0146400-01;Name=Os02t0146400-01;Locus_id=Os02g0146400;RAP-DB Gene Symbol Synonym(s)=OsSF3B1%2C SF3B1;RAP-DB Gene Name Synonym(s)=Splicing factor 3B subunit 1;CGSNL Gene Symbol=SF3B1;Oryzabase Gene Symbol Synonym(s)=OsSF3B1%2C SGR;Oryzabase Gene Name Synonym(s)=core splicing factor SF3B1%2C SF3B1-GEX1A-Resistant;Note=Core splicing factor%2C Spliceosomal protein;Transcript_evidence=AK071377 (truncated),Inferred from literature;ORF_evidence=A3A338;InterPro=Armadillo-type fold (IPR016024),Armadillo-like helical (IPR011989),Splicing factor 3B subunit 1 (IPR015016),TOG domain (IPR034085),HEAT%2C type 2 (IPR021133);NIAS_FLcDNA=J023098A02 (truncated);Manual Curation=October 23%2C 2019;Literature_PMID=31036069;Oryzabase=23140;Expression=AK071377;TENOR=Os02t0146400-01;KEGG=Os02t0146400-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	2545984	2549835	.	+	0	Parent=Os02t0146400-01
Chr02	irgsp1_rep	three_prime_UTR	2549836	2549840	.	+	.	Parent=Os02t0146400-01
Chr02	irgsp1_rep	three_prime_UTR	2550483	2550550	.	+	.	Parent=Os02t0146400-01
Chr02	irgsp1_rep	three_prime_UTR	2550642	2551064	.	+	.	Parent=Os02t0146400-01
Chr02	irgsp1_rep	mRNA	2549215	2551007	.	+	.	ID=Os02t0146400-02;Name=Os02t0146400-02;Locus_id=Os02g0146400;CGSNL Gene Symbol=SF3B1;Oryzabase Gene Symbol Synonym(s)=OsSF3B1%2C SGR;Oryzabase Gene Name Synonym(s)=core splicing factor SF3B1%2C SF3B1-GEX1A-Resistant;Note=Similar to predicted protein.;Transcript_evidence=AK058747 (DDBJ%2C Best hit);ORF_evidence=D0N488 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=001-019-H04;Oryzabase=23140;Expression=AK058747;TENOR=Os02t0146400-02;KEGG=Os02t0146400-02
Chr02	irgsp1_rep	CDS	2549215	2549835	.	+	0	Parent=Os02t0146400-02
Chr02	irgsp1_rep	three_prime_UTR	2549836	2549840	.	+	.	Parent=Os02t0146400-02
Chr02	irgsp1_rep	three_prime_UTR	2550483	2551007	.	+	.	Parent=Os02t0146400-02
Chr02	irgsp1_rep	mRNA	2551636	2556272	.	+	.	ID=Os02t0146500-01;Name=Os02t0146500-01;Locus_id=Os02g0146500;Note=Conserved hypothetical protein.;Transcript_evidence=AK067901 (DDBJ%2C Best hit);ORF_evidence=B9F2Q1 (UniProt);NIAS_FLcDNA=J013125B21;TENOR=Os02t0146500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	2551636	2551676	.	+	.	Parent=Os02t0146500-01
Chr02	irgsp1_rep	CDS	2551677	2551876	.	+	0	Parent=Os02t0146500-01
Chr02	irgsp1_rep	CDS	2552723	2552835	.	+	1	Parent=Os02t0146500-01
Chr02	irgsp1_rep	CDS	2552984	2553172	.	+	2	Parent=Os02t0146500-01
Chr02	irgsp1_rep	CDS	2553285	2553415	.	+	2	Parent=Os02t0146500-01
Chr02	irgsp1_rep	three_prime_UTR	2553416	2553739	.	+	.	Parent=Os02t0146500-01
Chr02	irgsp1_rep	three_prime_UTR	2553837	2553911	.	+	.	Parent=Os02t0146500-01
Chr02	irgsp1_rep	three_prime_UTR	2553985	2554211	.	+	.	Parent=Os02t0146500-01
Chr02	irgsp1_rep	three_prime_UTR	2554363	2554552	.	+	.	Parent=Os02t0146500-01
Chr02	irgsp1_rep	three_prime_UTR	2554629	2554694	.	+	.	Parent=Os02t0146500-01
Chr02	irgsp1_rep	three_prime_UTR	2554809	2554897	.	+	.	Parent=Os02t0146500-01
Chr02	irgsp1_rep	three_prime_UTR	2554992	2555106	.	+	.	Parent=Os02t0146500-01
Chr02	irgsp1_rep	three_prime_UTR	2555192	2555243	.	+	.	Parent=Os02t0146500-01
Chr02	irgsp1_rep	three_prime_UTR	2555319	2555419	.	+	.	Parent=Os02t0146500-01
Chr02	irgsp1_rep	three_prime_UTR	2555518	2556272	.	+	.	Parent=Os02t0146500-01
Chr02	irgsp1_rep	mRNA	2554073	2556278	.	+	.	ID=Os02t0146500-02;Name=Os02t0146500-02;Locus_id=Os02g0146500;Note=Similar to cDNA clone:J013125B21%2C full insert sequence.;Transcript_evidence=AK060195 (DDBJ%2C Best hit);ORF_evidence=B7EE59 (UniProt);NIAS_FLcDNA=001-001-F01;TENOR=Os02t0146500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	2554073	2554330	.	+	.	Parent=Os02t0146500-02
Chr02	irgsp1_rep	CDS	2554331	2554552	.	+	0	Parent=Os02t0146500-02
Chr02	irgsp1_rep	CDS	2554629	2554694	.	+	0	Parent=Os02t0146500-02
Chr02	irgsp1_rep	CDS	2554809	2554897	.	+	0	Parent=Os02t0146500-02
Chr02	irgsp1_rep	CDS	2554992	2555130	.	+	1	Parent=Os02t0146500-02
Chr02	irgsp1_rep	three_prime_UTR	2555131	2555419	.	+	.	Parent=Os02t0146500-02
Chr02	irgsp1_rep	three_prime_UTR	2555518	2556278	.	+	.	Parent=Os02t0146500-02
Chr02	irgsp1_rep	mRNA	2557668	2561013	.	+	.	ID=Os02t0146600-01;Name=Os02t0146600-01;Locus_id=Os02g0146600;CGSNL Gene Symbol=EIF4A2;CGSNL Gene Name=EUKARYOTIC INITIATION FACTOR 4A-2;Oryzabase Gene Symbol Synonym(s)=eIF-4a%2C EIF4A%2C OseIF4A%2C eIF4A2%2C eIF4A-3%2C OsRH23;Oryzabase Gene Name Synonym(s)=eukaryotic initiation factor 4A-2%2C eukaryotic initiation factor 4A%2C RNA helicase 23. Eukaryotic initiation factor 4A-3;Note=Similar to Eukaryotic initiation factor 4A (eIF4A) (eIF-4A).;Transcript_evidence=AK073620 (DDBJ%2C Best hit);ORF_evidence=Q4U474 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=RNA helicase%2C ATP-dependent%2C DEAD-box%2C conserved site (IPR000629),Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=J033048E24;Oryzabase=13457;Expression=AK073620;TENOR=Os02t0146600-01;KEGG=Os02t0146600-01
Chr02	irgsp1_rep	five_prime_UTR	2557668	2557856	.	+	.	Parent=Os02t0146600-01
Chr02	irgsp1_rep	five_prime_UTR	2558792	2558793	.	+	.	Parent=Os02t0146600-01
Chr02	irgsp1_rep	CDS	2558794	2558864	.	+	0	Parent=Os02t0146600-01
Chr02	irgsp1_rep	CDS	2558995	2559101	.	+	1	Parent=Os02t0146600-01
Chr02	irgsp1_rep	CDS	2559187	2559617	.	+	2	Parent=Os02t0146600-01
Chr02	irgsp1_rep	CDS	2560102	2560737	.	+	0	Parent=Os02t0146600-01
Chr02	irgsp1_rep	three_prime_UTR	2560738	2561013	.	+	.	Parent=Os02t0146600-01
Chr02	irgsp1_rep	mRNA	2563647	2567772	.	+	.	ID=Os02t0146700-01;Name=Os02t0146700-01;Locus_id=Os02g0146700;Note=Similar to predicted protein.;Transcript_evidence=AK119490 (DDBJ%2C Best hit);ORF_evidence=XP_002884212.1 (RefSeq);GO=Biological Process: regulation of protein catabolic process (GO:0042176),Cellular Component: proteasome complex (GO:0000502),Molecular Function: binding (GO:0005488),Molecular Function: enzyme regulator activity (GO:0030234);InterPro=Armadillo-type fold (IPR016024),26S proteasome regulatory complex%2C non-ATPase subcomplex%2C Rpn1 subunit (IPR016643);NIAS_FLcDNA=001-134-D03;TENOR=Os02t0146700-01
Chr02	irgsp1_rep	five_prime_UTR	2563647	2563774	.	+	.	Parent=Os02t0146700-01
Chr02	irgsp1_rep	CDS	2563775	2563900	.	+	0	Parent=Os02t0146700-01
Chr02	irgsp1_rep	CDS	2564033	2564133	.	+	0	Parent=Os02t0146700-01
Chr02	irgsp1_rep	CDS	2564377	2564500	.	+	1	Parent=Os02t0146700-01
Chr02	irgsp1_rep	CDS	2564594	2564653	.	+	0	Parent=Os02t0146700-01
Chr02	irgsp1_rep	CDS	2564764	2564831	.	+	0	Parent=Os02t0146700-01
Chr02	irgsp1_rep	CDS	2565522	2565564	.	+	1	Parent=Os02t0146700-01
Chr02	irgsp1_rep	CDS	2566028	2566093	.	+	0	Parent=Os02t0146700-01
Chr02	irgsp1_rep	CDS	2566239	2566277	.	+	0	Parent=Os02t0146700-01
Chr02	irgsp1_rep	CDS	2566377	2566459	.	+	0	Parent=Os02t0146700-01
Chr02	irgsp1_rep	CDS	2566656	2566767	.	+	1	Parent=Os02t0146700-01
Chr02	irgsp1_rep	CDS	2566842	2566925	.	+	0	Parent=Os02t0146700-01
Chr02	irgsp1_rep	CDS	2567028	2567186	.	+	0	Parent=Os02t0146700-01
Chr02	irgsp1_rep	CDS	2567270	2567374	.	+	0	Parent=Os02t0146700-01
Chr02	irgsp1_rep	CDS	2567453	2567557	.	+	0	Parent=Os02t0146700-01
Chr02	irgsp1_rep	CDS	2567663	2567772	.	+	0	Parent=Os02t0146700-01
Chr02	irgsp1_rep	mRNA	2563699	2571143	.	+	.	ID=Os02t0146700-02;Name=Os02t0146700-02;Locus_id=Os02g0146700;Note=Similar to PSMD2 subunit (Fragment).;Transcript_evidence=AK105609 (DDBJ%2C Best hit),AK121963 (DDBJ%2C Best hit);ORF_evidence=XP_002884212.1 (RefSeq);GO=Biological Process: regulation of protein catabolic process (GO:0042176),Cellular Component: proteasome complex (GO:0000502),Molecular Function: binding (GO:0005488),Molecular Function: enzyme regulator activity (GO:0030234);InterPro=Proteasome/cyclosome%2C regulatory subunit (IPR002015),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),26S proteasome regulatory complex%2C non-ATPase subcomplex%2C Rpn1 subunit (IPR016643);NIAS_FLcDNA=001-200-B03,J033108C09;TENOR=Os02t0146700-02
Chr02	irgsp1_rep	five_prime_UTR	2563699	2563774	.	+	.	Parent=Os02t0146700-02
Chr02	irgsp1_rep	CDS	2563775	2563900	.	+	0	Parent=Os02t0146700-02
Chr02	irgsp1_rep	CDS	2564033	2564133	.	+	0	Parent=Os02t0146700-02
Chr02	irgsp1_rep	CDS	2564377	2564500	.	+	1	Parent=Os02t0146700-02
Chr02	irgsp1_rep	CDS	2564594	2564653	.	+	0	Parent=Os02t0146700-02
Chr02	irgsp1_rep	CDS	2564764	2564831	.	+	0	Parent=Os02t0146700-02
Chr02	irgsp1_rep	CDS	2565522	2565564	.	+	1	Parent=Os02t0146700-02
Chr02	irgsp1_rep	CDS	2566028	2566093	.	+	0	Parent=Os02t0146700-02
Chr02	irgsp1_rep	CDS	2566239	2566277	.	+	0	Parent=Os02t0146700-02
Chr02	irgsp1_rep	CDS	2566377	2566459	.	+	0	Parent=Os02t0146700-02
Chr02	irgsp1_rep	CDS	2566656	2566767	.	+	1	Parent=Os02t0146700-02
Chr02	irgsp1_rep	CDS	2566842	2566925	.	+	0	Parent=Os02t0146700-02
Chr02	irgsp1_rep	CDS	2567028	2567186	.	+	0	Parent=Os02t0146700-02
Chr02	irgsp1_rep	CDS	2567270	2567374	.	+	0	Parent=Os02t0146700-02
Chr02	irgsp1_rep	CDS	2567453	2567557	.	+	0	Parent=Os02t0146700-02
Chr02	irgsp1_rep	CDS	2567663	2567803	.	+	0	Parent=Os02t0146700-02
Chr02	irgsp1_rep	CDS	2567922	2568026	.	+	0	Parent=Os02t0146700-02
Chr02	irgsp1_rep	CDS	2568113	2568337	.	+	0	Parent=Os02t0146700-02
Chr02	irgsp1_rep	CDS	2568764	2568877	.	+	0	Parent=Os02t0146700-02
Chr02	irgsp1_rep	CDS	2568965	2569180	.	+	0	Parent=Os02t0146700-02
Chr02	irgsp1_rep	CDS	2569676	2569735	.	+	0	Parent=Os02t0146700-02
Chr02	irgsp1_rep	CDS	2569829	2569942	.	+	0	Parent=Os02t0146700-02
Chr02	irgsp1_rep	CDS	2570049	2570134	.	+	0	Parent=Os02t0146700-02
Chr02	irgsp1_rep	CDS	2570213	2570321	.	+	1	Parent=Os02t0146700-02
Chr02	irgsp1_rep	CDS	2570410	2570588	.	+	0	Parent=Os02t0146700-02
Chr02	irgsp1_rep	CDS	2570675	2570747	.	+	1	Parent=Os02t0146700-02
Chr02	irgsp1_rep	three_prime_UTR	2570748	2571143	.	+	.	Parent=Os02t0146700-02
Chr02	irgsp1_rep	mRNA	2575663	2577064	.	-	.	ID=Os02t0146900-01;Name=Os02t0146900-01;Locus_id=Os02g0146900;Note=Protein of unknown function DUF1677%2C Oryza sativa family protein.;Transcript_evidence=AK073597 (DDBJ%2C Best hit),AK103956 (DDBJ%2C Best hit);ORF_evidence=NP_001045885.1 (RefSeq);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);NIAS_FLcDNA=J033048L23,001-015-A03;Expression=AK073597;TENOR=Os02t0146900-01;KEGG=Os02t0146900-01
Chr02	irgsp1_rep	five_prime_UTR	2576973	2577064	.	-	.	Parent=Os02t0146900-01
Chr02	irgsp1_rep	CDS	2575860	2576972	.	-	0	Parent=Os02t0146900-01
Chr02	irgsp1_rep	three_prime_UTR	2575663	2575859	.	-	.	Parent=Os02t0146900-01
Chr02	irgsp1_rep	mRNA	2577232	2585430	.	+	.	ID=Os02t0147100-00;Name=Os02t0147100-00;Locus_id=Os02g0147100;Note=Conserved hypothetical protein.;Transcript_evidence=AK243199 (DDBJ%2C Secondary hit);ORF_evidence=B8AHR4 (UniProt);TENOR=Os02t0147100-00
Chr02	irgsp1_rep	five_prime_UTR	2577232	2577377	.	+	.	Parent=Os02t0147100-00
Chr02	irgsp1_rep	CDS	2577378	2577422	.	+	0	Parent=Os02t0147100-00
Chr02	irgsp1_rep	CDS	2578019	2578223	.	+	0	Parent=Os02t0147100-00
Chr02	irgsp1_rep	CDS	2578557	2578621	.	+	2	Parent=Os02t0147100-00
Chr02	irgsp1_rep	CDS	2583181	2583268	.	+	0	Parent=Os02t0147100-00
Chr02	irgsp1_rep	CDS	2583367	2583434	.	+	2	Parent=Os02t0147100-00
Chr02	irgsp1_rep	CDS	2583818	2583868	.	+	0	Parent=Os02t0147100-00
Chr02	irgsp1_rep	CDS	2584333	2584450	.	+	0	Parent=Os02t0147100-00
Chr02	irgsp1_rep	CDS	2584628	2584674	.	+	2	Parent=Os02t0147100-00
Chr02	irgsp1_rep	CDS	2584768	2584794	.	+	0	Parent=Os02t0147100-00
Chr02	irgsp1_rep	CDS	2584971	2585046	.	+	0	Parent=Os02t0147100-00
Chr02	irgsp1_rep	CDS	2585322	2585430	.	+	2	Parent=Os02t0147100-00
Chr02	irgsp1_rep	mRNA	2593746	2598284	.	-	.	ID=Os02t0147200-01;Name=Os02t0147200-01;Locus_id=Os02g0147200;Note=Similar to cDNA clone:J013125B21%2C full insert sequence.;Transcript_evidence=AK242218 (DDBJ%2C Best hit);ORF_evidence=B7EE59 (UniProt);NIAS_FLcDNA=J075173D13;TENOR=Os02t0147200-01;KEGG=Os02t0147200-01 (EC:2.7.1.108)
Chr02	irgsp1_rep	five_prime_UTR	2598065	2598284	.	-	.	Parent=Os02t0147200-01
Chr02	irgsp1_rep	five_prime_UTR	2596309	2597300	.	-	.	Parent=Os02t0147200-01
Chr02	irgsp1_rep	CDS	2596285	2596308	.	-	0	Parent=Os02t0147200-01
Chr02	irgsp1_rep	CDS	2595969	2596187	.	-	0	Parent=Os02t0147200-01
Chr02	irgsp1_rep	three_prime_UTR	2595470	2595968	.	-	.	Parent=Os02t0147200-01
Chr02	irgsp1_rep	three_prime_UTR	2595328	2595393	.	-	.	Parent=Os02t0147200-01
Chr02	irgsp1_rep	three_prime_UTR	2595126	2595214	.	-	.	Parent=Os02t0147200-01
Chr02	irgsp1_rep	three_prime_UTR	2594917	2595031	.	-	.	Parent=Os02t0147200-01
Chr02	irgsp1_rep	three_prime_UTR	2594780	2594831	.	-	.	Parent=Os02t0147200-01
Chr02	irgsp1_rep	three_prime_UTR	2594604	2594704	.	-	.	Parent=Os02t0147200-01
Chr02	irgsp1_rep	three_prime_UTR	2593746	2594505	.	-	.	Parent=Os02t0147200-01
Chr02	irgsp1_rep	mRNA	2599191	2604031	.	-	.	ID=Os02t0147300-01;Name=Os02t0147300-01;Locus_id=Os02g0147300;Note=Hypothetical conserved gene.;Transcript_evidence=AK288378 (DDBJ%2C Best hit);ORF_evidence=NP_001045883.1 (RefSeq);NIAS_FLcDNA=J090026K20;TENOR=Os02t0147300-01;KEGG=Os02t0147300-01
Chr02	irgsp1_rep	five_prime_UTR	2603984	2604031	.	-	.	Parent=Os02t0147300-01
Chr02	irgsp1_rep	CDS	2603426	2603983	.	-	0	Parent=Os02t0147300-01
Chr02	irgsp1_rep	three_prime_UTR	2600395	2603425	.	-	.	Parent=Os02t0147300-01
Chr02	irgsp1_rep	three_prime_UTR	2599191	2599501	.	-	.	Parent=Os02t0147300-01
Chr02	irgsp1_rep	mRNA	2606707	2608942	.	+	.	ID=Os02t0147500-00;Name=Os02t0147500-00;Locus_id=Os02g0147500;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001045884.2 (RefSeq);TENOR=Os02t0147500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	2606707	2606942	.	+	0	Parent=Os02t0147500-00
Chr02	irgsp1_rep	CDS	2607029	2607373	.	+	1	Parent=Os02t0147500-00
Chr02	irgsp1_rep	CDS	2607768	2608614	.	+	1	Parent=Os02t0147500-00
Chr02	irgsp1_rep	CDS	2608844	2608942	.	+	0	Parent=Os02t0147500-00
Chr02	irgsp1_rep	mRNA	2612044	2614087	.	-	.	ID=Os02t0147600-01;Name=Os02t0147600-01;Locus_id=Os02g0147600;Note=Protein of unknown function DUF1677%2C Oryza sativa family protein.;Transcript_evidence=AK100775 (DDBJ%2C Best hit),AK100310 (DDBJ%2C Best hit),AK288079 (DDBJ%2C Best hit);ORF_evidence=NP_001045880.1 (RefSeq);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);NIAS_FLcDNA=J023120C08,J023078J22,J075164F10;Expression=AK100775;TENOR=Os02t0147600-01;KEGG=Os02t0147600-01
Chr02	irgsp1_rep	five_prime_UTR	2613991	2614087	.	-	.	Parent=Os02t0147600-01
Chr02	irgsp1_rep	CDS	2612875	2613990	.	-	0	Parent=Os02t0147600-01
Chr02	irgsp1_rep	three_prime_UTR	2612044	2612874	.	-	.	Parent=Os02t0147600-01
Chr02	irgsp1_rep	mRNA	2614247	2618993	.	+	.	ID=Os02t0147700-01;Name=Os02t0147700-01;Locus_id=Os02g0147700;Note=Conserved hypothetical protein.;Transcript_evidence=AK059340 (DDBJ%2C Best hit);ORF_evidence=B8AHR4 (UniProt);NIAS_FLcDNA=001-026-B04;Expression=AK059340;TENOR=Os02t0147700-01;KEGG=Os02t0147700-01
Chr02	irgsp1_rep	five_prime_UTR	2614247	2614395	.	+	.	Parent=Os02t0147700-01
Chr02	irgsp1_rep	CDS	2614396	2614440	.	+	0	Parent=Os02t0147700-01
Chr02	irgsp1_rep	CDS	2615037	2615241	.	+	0	Parent=Os02t0147700-01
Chr02	irgsp1_rep	CDS	2615575	2615639	.	+	2	Parent=Os02t0147700-01
Chr02	irgsp1_rep	CDS	2616018	2616105	.	+	0	Parent=Os02t0147700-01
Chr02	irgsp1_rep	CDS	2616204	2616271	.	+	2	Parent=Os02t0147700-01
Chr02	irgsp1_rep	CDS	2616655	2616705	.	+	0	Parent=Os02t0147700-01
Chr02	irgsp1_rep	CDS	2617170	2617287	.	+	0	Parent=Os02t0147700-01
Chr02	irgsp1_rep	CDS	2617465	2617511	.	+	2	Parent=Os02t0147700-01
Chr02	irgsp1_rep	CDS	2617605	2617631	.	+	0	Parent=Os02t0147700-01
Chr02	irgsp1_rep	CDS	2617808	2617883	.	+	0	Parent=Os02t0147700-01
Chr02	irgsp1_rep	CDS	2618159	2618298	.	+	2	Parent=Os02t0147700-01
Chr02	irgsp1_rep	CDS	2618625	2618723	.	+	0	Parent=Os02t0147700-01
Chr02	irgsp1_rep	three_prime_UTR	2618724	2618993	.	+	.	Parent=Os02t0147700-01
Chr02	irgsp1_rep	mRNA	2614250	2618267	.	+	.	ID=Os02t0147700-02;Name=Os02t0147700-02;Locus_id=Os02g0147700;Note=Hypothetical conserved gene.;Transcript_evidence=AK243199 (DDBJ%2C Best hit);ORF_evidence=NP_001045886.1 (RefSeq);NIAS_FLcDNA=J100040F14;TENOR=Os02t0147700-02
Chr02	irgsp1_rep	five_prime_UTR	2614250	2614395	.	+	.	Parent=Os02t0147700-02
Chr02	irgsp1_rep	CDS	2614396	2614440	.	+	0	Parent=Os02t0147700-02
Chr02	irgsp1_rep	CDS	2615037	2615241	.	+	0	Parent=Os02t0147700-02
Chr02	irgsp1_rep	CDS	2615575	2615639	.	+	2	Parent=Os02t0147700-02
Chr02	irgsp1_rep	CDS	2616018	2616105	.	+	0	Parent=Os02t0147700-02
Chr02	irgsp1_rep	CDS	2616204	2616271	.	+	2	Parent=Os02t0147700-02
Chr02	irgsp1_rep	CDS	2616655	2616705	.	+	0	Parent=Os02t0147700-02
Chr02	irgsp1_rep	CDS	2617170	2617287	.	+	0	Parent=Os02t0147700-02
Chr02	irgsp1_rep	CDS	2617465	2617511	.	+	2	Parent=Os02t0147700-02
Chr02	irgsp1_rep	CDS	2617605	2617631	.	+	0	Parent=Os02t0147700-02
Chr02	irgsp1_rep	CDS	2617808	2617883	.	+	0	Parent=Os02t0147700-02
Chr02	irgsp1_rep	CDS	2618159	2618267	.	+	2	Parent=Os02t0147700-02
Chr02	irgsp1_rep	mRNA	2614272	2618999	.	+	.	ID=Os02t0147700-03;Name=Os02t0147700-03;Locus_id=Os02g0147700;Note=Hypothetical conserved gene.;Transcript_evidence=AK068065 (DDBJ%2C Best hit);ORF_evidence=NP_197851.5 (RefSeq);NIAS_FLcDNA=J013131D02;Expression=AK068065;TENOR=Os02t0147700-03;KEGG=Os02t0147700-03
Chr02	irgsp1_rep	five_prime_UTR	2614272	2614395	.	+	.	Parent=Os02t0147700-03
Chr02	irgsp1_rep	CDS	2614396	2614440	.	+	0	Parent=Os02t0147700-03
Chr02	irgsp1_rep	CDS	2615037	2615086	.	+	0	Parent=Os02t0147700-03
Chr02	irgsp1_rep	CDS	2617190	2617287	.	+	1	Parent=Os02t0147700-03
Chr02	irgsp1_rep	CDS	2617465	2617511	.	+	2	Parent=Os02t0147700-03
Chr02	irgsp1_rep	CDS	2617605	2617631	.	+	0	Parent=Os02t0147700-03
Chr02	irgsp1_rep	CDS	2617808	2617883	.	+	0	Parent=Os02t0147700-03
Chr02	irgsp1_rep	CDS	2618159	2618298	.	+	2	Parent=Os02t0147700-03
Chr02	irgsp1_rep	CDS	2618625	2618723	.	+	0	Parent=Os02t0147700-03
Chr02	irgsp1_rep	three_prime_UTR	2618724	2618999	.	+	.	Parent=Os02t0147700-03
Chr02	irgsp1_rep	mRNA	2620369	2624177	.	+	.	ID=Os02t0147800-01;Name=Os02t0147800-01;Locus_id=Os02g0147800;Oryzabase Gene Name Synonym(s)=homeodomain protein;Note=Hypothetical conserved gene.;Transcript_evidence=AK106225 (DDBJ%2C Best hit);ORF_evidence=B8AHR5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-finger (IPR019787);NIAS_FLcDNA=002-100-A04;Oryzabase=15979;Expression=AK106225;TENOR=Os02t0147800-01;KEGG=Os02t0147800-01
Chr02	irgsp1_rep	five_prime_UTR	2620369	2620681	.	+	.	Parent=Os02t0147800-01
Chr02	irgsp1_rep	five_prime_UTR	2621269	2621303	.	+	.	Parent=Os02t0147800-01
Chr02	irgsp1_rep	CDS	2621304	2621713	.	+	0	Parent=Os02t0147800-01
Chr02	irgsp1_rep	CDS	2622444	2622618	.	+	1	Parent=Os02t0147800-01
Chr02	irgsp1_rep	CDS	2622696	2622813	.	+	0	Parent=Os02t0147800-01
Chr02	irgsp1_rep	CDS	2623383	2623498	.	+	2	Parent=Os02t0147800-01
Chr02	irgsp1_rep	CDS	2623628	2623966	.	+	0	Parent=Os02t0147800-01
Chr02	irgsp1_rep	CDS	2624115	2624177	.	+	0	Parent=Os02t0147800-01
Chr02	irgsp1_rep	mRNA	2620424	2626215	.	+	.	ID=Os02t0147800-02;Name=Os02t0147800-02;Locus_id=Os02g0147800;Oryzabase Gene Name Synonym(s)=homeodomain protein;Note=Similar to Homeo protein (Fragment).;Transcript_evidence=AK070502 (DDBJ%2C Best hit),AK065257 (DDBJ%2C Best hit),AK098855 (DDBJ%2C Best hit);ORF_evidence=B8AHR5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),Homeodomain-like (IPR009057),Zinc finger%2C FYVE/PHD-type (IPR011011),Homeodomain-related (IPR012287),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-finger (IPR019787);NIAS_FLcDNA=J023051F17,J013002J16,J013000I05;Oryzabase=15979;TENOR=Os02t0147800-02
Chr02	irgsp1_rep	five_prime_UTR	2620424	2620681	.	+	.	Parent=Os02t0147800-02
Chr02	irgsp1_rep	five_prime_UTR	2621269	2621303	.	+	.	Parent=Os02t0147800-02
Chr02	irgsp1_rep	CDS	2621304	2621713	.	+	0	Parent=Os02t0147800-02
Chr02	irgsp1_rep	CDS	2622444	2622618	.	+	1	Parent=Os02t0147800-02
Chr02	irgsp1_rep	CDS	2622696	2622813	.	+	0	Parent=Os02t0147800-02
Chr02	irgsp1_rep	CDS	2623383	2623498	.	+	2	Parent=Os02t0147800-02
Chr02	irgsp1_rep	CDS	2623628	2623966	.	+	0	Parent=Os02t0147800-02
Chr02	irgsp1_rep	CDS	2624115	2624309	.	+	0	Parent=Os02t0147800-02
Chr02	irgsp1_rep	CDS	2624507	2624596	.	+	0	Parent=Os02t0147800-02
Chr02	irgsp1_rep	CDS	2624889	2624937	.	+	0	Parent=Os02t0147800-02
Chr02	irgsp1_rep	CDS	2625288	2625520	.	+	2	Parent=Os02t0147800-02
Chr02	irgsp1_rep	CDS	2625634	2625954	.	+	0	Parent=Os02t0147800-02
Chr02	irgsp1_rep	three_prime_UTR	2625955	2626215	.	+	.	Parent=Os02t0147800-02
Chr02	irgsp1_rep	mRNA	2621674	2622657	.	-	.	ID=Os02t0147850-00;Name=Os02t0147850-00;Locus_id=Os02g0147850;Note=Non-protein coding transcript.;Transcript_evidence=EU947647 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0147850-00
Chr02	irgsp1_rep	exon	2622395	2622657	.	-	.	Parent=Os02t0147850-00
Chr02	irgsp1_rep	exon	2621674	2621785	.	-	.	Parent=Os02t0147850-00
Chr02	irgsp1_rep	mRNA	2638443	2642064	.	+	.	ID=Os02t0148000-01;Name=Os02t0148000-01;Locus_id=Os02g0148000;Oryzabase Gene Symbol Synonym(s)=OsCCT03%2C OsCMF3;Oryzabase Gene Name Synonym(s)=CCT domain-containing gene 3%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 3%2C CCT domain protein 3%2C CCT MOTIF FAMILY (CMF) gene 3;Note=CCT domain containing protein.;Transcript_evidence=AK120401 (DDBJ%2C Best hit);ORF_evidence=B6SV94 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=CCT domain (IPR010402);NIAS_FLcDNA=J013088G22;Oryzabase=19170;Expression=AK120401;TENOR=Os02t0148000-01;KEGG=Os02t0148000-01
Chr02	irgsp1_rep	five_prime_UTR	2638443	2639025	.	+	.	Parent=Os02t0148000-01
Chr02	irgsp1_rep	CDS	2639026	2640249	.	+	0	Parent=Os02t0148000-01
Chr02	irgsp1_rep	CDS	2641401	2641592	.	+	0	Parent=Os02t0148000-01
Chr02	irgsp1_rep	three_prime_UTR	2641593	2641606	.	+	.	Parent=Os02t0148000-01
Chr02	irgsp1_rep	three_prime_UTR	2641756	2642064	.	+	.	Parent=Os02t0148000-01
Chr02	irgsp1_rep	mRNA	2641460	2642026	.	-	.	ID=Os02t0148050-00;Name=Os02t0148050-00;Locus_id=Os02g0148050;Note=Non-protein coding transcript.;Transcript_evidence=AF448491 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os02t0148050-00
Chr02	irgsp1_rep	exon	2641460	2642026	.	-	.	Parent=Os02t0148050-00
Chr02	irgsp1_rep	mRNA	2643056	2646360	.	-	.	ID=Os02t0148100-01;Name=Os02t0148100-01;Locus_id=Os02g0148100;RAP-DB Gene Symbol Synonym(s)=OsMAPK14%2C OsMPK3%2C OsMAPK33;RAP-DB Gene Name Synonym(s)=MAP kinase 14%2C Mitogen-activated Protein Kinase 3%2C mitogen-activated protein kinase 33;Oryzabase Gene Symbol Synonym(s)=OsMAPK33%2C OsMPK14%2C OsMAPK2%2C OsMAP3%2C OsMPK14%2C OsMPK3%2C MAPK33%2C MPK14%2C MAPK2%2C MAP3%2C MPK14%2C MPK3;Oryzabase Gene Name Synonym(s)=MAP kinase 14;Note=TEY-type mitogen-activated protein kinase (MAPK)%2C Regulation of seed dormancy%2C Defense signal transduction%2C Osmotic homeostasis%2C Negative role in salt tolerance;Transcript_evidence=AK119650;ORF_evidence=Q6Z437;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: MAP kinase activity (GO:0004707),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),Protein kinase domain (IPR000719),Protein kinase%2C ATP binding site (IPR017441),Mitogen-activated protein (MAP) kinase%2C conserved site (IPR003527),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=002-130-G10;Manual Curation=October 13%2C 2020;Literature_PMID=30671680,24777821,21451255;Oryzabase=9462;Expression=AK119650;TENOR=Os02t0148100-01;KEGG=Os02t0148100-01 (EC:2.7.11.24);Subcellular location=cytoplasm (GO:0005737),nucleus (GO:0005634)
Chr02	irgsp1_rep	five_prime_UTR	2646187	2646360	.	-	.	Parent=Os02t0148100-01
Chr02	irgsp1_rep	five_prime_UTR	2645468	2645473	.	-	.	Parent=Os02t0148100-01
Chr02	irgsp1_rep	CDS	2645045	2645467	.	-	0	Parent=Os02t0148100-01
Chr02	irgsp1_rep	CDS	2643312	2644001	.	-	0	Parent=Os02t0148100-01
Chr02	irgsp1_rep	three_prime_UTR	2643056	2643311	.	-	.	Parent=Os02t0148100-01
Chr02	irgsp1_rep	mRNA	2656812	2658986	.	+	.	ID=Os02t0148300-01;Name=Os02t0148300-01;Locus_id=Os02g0148300;Note=Similar to Myosin-like protein (Fragment).;Transcript_evidence=AK071342 (DDBJ%2C Best hit);ORF_evidence=Q84VD2 (UniProt);NIAS_FLcDNA=J023091H02;TENOR=Os02t0148300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	2656812	2656812	.	+	.	Parent=Os02t0148300-01
Chr02	irgsp1_rep	CDS	2656813	2657427	.	+	0	Parent=Os02t0148300-01
Chr02	irgsp1_rep	CDS	2657525	2657651	.	+	0	Parent=Os02t0148300-01
Chr02	irgsp1_rep	CDS	2657733	2657814	.	+	2	Parent=Os02t0148300-01
Chr02	irgsp1_rep	CDS	2657892	2657991	.	+	1	Parent=Os02t0148300-01
Chr02	irgsp1_rep	three_prime_UTR	2657992	2658006	.	+	.	Parent=Os02t0148300-01
Chr02	irgsp1_rep	three_prime_UTR	2658631	2658986	.	+	.	Parent=Os02t0148300-01
Chr02	irgsp1_rep	mRNA	2659672	2663043	.	+	.	ID=Os02t0148400-01;Name=Os02t0148400-01;Locus_id=Os02g0148400;Note=FMN-binding split barrel domain containing protein.;Transcript_evidence=AK072039 (DDBJ%2C Best hit);ORF_evidence=B6TBI9 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: pyridoxamine-phosphate oxidase activity (GO:0004733),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FMN-binding split barrel-related (IPR009002),Pyridoxamine 5&apos%3B-phosphate oxidase-like%2C FMN-binding domain (IPR011576),FMN-binding split barrel (IPR012349);NIAS_FLcDNA=J013104M06;Expression=AK072039;TENOR=Os02t0148400-01;KEGG=Os02t0148400-01
Chr02	irgsp1_rep	five_prime_UTR	2659672	2659705	.	+	.	Parent=Os02t0148400-01
Chr02	irgsp1_rep	CDS	2659706	2660014	.	+	0	Parent=Os02t0148400-01
Chr02	irgsp1_rep	CDS	2660320	2660490	.	+	0	Parent=Os02t0148400-01
Chr02	irgsp1_rep	CDS	2660638	2660740	.	+	0	Parent=Os02t0148400-01
Chr02	irgsp1_rep	CDS	2660830	2660909	.	+	2	Parent=Os02t0148400-01
Chr02	irgsp1_rep	CDS	2660983	2661060	.	+	0	Parent=Os02t0148400-01
Chr02	irgsp1_rep	CDS	2661714	2661805	.	+	0	Parent=Os02t0148400-01
Chr02	irgsp1_rep	CDS	2662003	2662114	.	+	1	Parent=Os02t0148400-01
Chr02	irgsp1_rep	CDS	2662282	2662407	.	+	0	Parent=Os02t0148400-01
Chr02	irgsp1_rep	CDS	2662620	2662733	.	+	0	Parent=Os02t0148400-01
Chr02	irgsp1_rep	three_prime_UTR	2662734	2663043	.	+	.	Parent=Os02t0148400-01
Chr02	irgsp1_rep	mRNA	2660322	2663016	.	+	.	ID=Os02t0148400-02;Name=Os02t0148400-02;Locus_id=Os02g0148400;Note=Similar to pyridoxamine 5-phosphate oxidase family protein.;Transcript_evidence=AK070451 (DDBJ%2C Best hit);ORF_evidence=B6TBI9 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: pyridoxamine-phosphate oxidase activity (GO:0004733),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FMN-binding split barrel-related (IPR009002),Pyridoxamine 5'-phosphate oxidase-like%2C FMN-binding domain (IPR011576),FMN-binding split barrel (IPR012349);NIAS_FLcDNA=J023049K22;Expression=AK070451;TENOR=Os02t0148400-02;KEGG=Os02t0148400-02
Chr02	irgsp1_rep	five_prime_UTR	2660322	2660322	.	+	.	Parent=Os02t0148400-02
Chr02	irgsp1_rep	CDS	2660323	2660490	.	+	0	Parent=Os02t0148400-02
Chr02	irgsp1_rep	CDS	2660638	2660740	.	+	0	Parent=Os02t0148400-02
Chr02	irgsp1_rep	CDS	2660830	2660909	.	+	2	Parent=Os02t0148400-02
Chr02	irgsp1_rep	CDS	2660983	2661060	.	+	0	Parent=Os02t0148400-02
Chr02	irgsp1_rep	CDS	2661714	2661805	.	+	0	Parent=Os02t0148400-02
Chr02	irgsp1_rep	CDS	2662003	2662114	.	+	1	Parent=Os02t0148400-02
Chr02	irgsp1_rep	CDS	2662282	2662407	.	+	0	Parent=Os02t0148400-02
Chr02	irgsp1_rep	CDS	2662620	2662733	.	+	0	Parent=Os02t0148400-02
Chr02	irgsp1_rep	three_prime_UTR	2662734	2663016	.	+	.	Parent=Os02t0148400-02
Chr02	irgsp1_rep	mRNA	2664442	2668161	.	+	.	ID=Os02t0148500-01;Name=Os02t0148500-01;Locus_id=Os02g0148500;CGSNL Gene Symbol=GATA17;CGSNL Gene Name=GATA TRANSCRIPTION FACTOR 17;Oryzabase Gene Symbol Synonym(s)=OsTIFY2a%2C OsCCT04%2C OsGATA17%2C OsGATA17a%2C OsGATA17b;Oryzabase Gene Name Synonym(s)=TIFY GENE 2A%2C TIFY-DOMAIN PROTEIN 2A%2C CCT domain-containing gene 4%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 4%2C CCT domain protein 4%2C GATA transcription factor 17%2C GATA factor 17;Note=Similar to TIMING OF CAB 1 (Fragment).;Transcript_evidence=AK068931 (DDBJ%2C Best hit);ORF_evidence=NP_001148559.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Zinc finger%2C GATA-type (IPR000679),Tify (IPR010399),CCT domain (IPR010402),Zinc finger%2C NHR/GATA-type (IPR013088);NIAS_FLcDNA=J023003E02;Oryzabase=15741;Expression=AK068931;TENOR=Os02t0148500-01;KEGG=Os02t0148500-01
Chr02	irgsp1_rep	five_prime_UTR	2664442	2664489	.	+	.	Parent=Os02t0148500-01
Chr02	irgsp1_rep	CDS	2664490	2664864	.	+	0	Parent=Os02t0148500-01
Chr02	irgsp1_rep	CDS	2664975	2665061	.	+	0	Parent=Os02t0148500-01
Chr02	irgsp1_rep	CDS	2665157	2665269	.	+	0	Parent=Os02t0148500-01
Chr02	irgsp1_rep	CDS	2665508	2665636	.	+	1	Parent=Os02t0148500-01
Chr02	irgsp1_rep	CDS	2666690	2666795	.	+	1	Parent=Os02t0148500-01
Chr02	irgsp1_rep	CDS	2667298	2667369	.	+	0	Parent=Os02t0148500-01
Chr02	irgsp1_rep	CDS	2667704	2667808	.	+	0	Parent=Os02t0148500-01
Chr02	irgsp1_rep	three_prime_UTR	2667809	2668161	.	+	.	Parent=Os02t0148500-01
Chr02	irgsp1_rep	mRNA	2668556	2671036	.	+	.	ID=Os02t0148600-01;Name=Os02t0148600-01;Locus_id=Os02g0148600;Note=Similar to 4/1 protein.;Transcript_evidence=AK059287 (DDBJ%2C Best hit);ORF_evidence=B6TC94 (UniProt);NIAS_FLcDNA=001-025-D11;Expression=AK059287;TENOR=Os02t0148600-01;KEGG=Os02t0148600-01
Chr02	irgsp1_rep	five_prime_UTR	2668556	2668598	.	+	.	Parent=Os02t0148600-01
Chr02	irgsp1_rep	CDS	2668599	2668673	.	+	0	Parent=Os02t0148600-01
Chr02	irgsp1_rep	CDS	2669023	2669128	.	+	0	Parent=Os02t0148600-01
Chr02	irgsp1_rep	CDS	2669281	2669336	.	+	2	Parent=Os02t0148600-01
Chr02	irgsp1_rep	CDS	2669832	2669909	.	+	0	Parent=Os02t0148600-01
Chr02	irgsp1_rep	CDS	2669995	2670068	.	+	0	Parent=Os02t0148600-01
Chr02	irgsp1_rep	CDS	2670149	2670282	.	+	1	Parent=Os02t0148600-01
Chr02	irgsp1_rep	CDS	2670379	2670474	.	+	2	Parent=Os02t0148600-01
Chr02	irgsp1_rep	CDS	2670705	2670856	.	+	2	Parent=Os02t0148600-01
Chr02	irgsp1_rep	three_prime_UTR	2670857	2671036	.	+	.	Parent=Os02t0148600-01
Chr02	irgsp1_rep	mRNA	2675680	2676610	.	-	.	ID=Os02t0148700-01;Name=Os02t0148700-01;Locus_id=Os02g0148700;Note=Hypothetical gene.;Transcript_evidence=AK068686 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013160E07;Expression=AK068686;TENOR=Os02t0148700-01;KEGG=Os02t0148700-01
Chr02	irgsp1_rep	five_prime_UTR	2676610	2676610	.	-	.	Parent=Os02t0148700-01
Chr02	irgsp1_rep	CDS	2676292	2676609	.	-	0	Parent=Os02t0148700-01
Chr02	irgsp1_rep	three_prime_UTR	2675680	2676291	.	-	.	Parent=Os02t0148700-01
Chr02	irgsp1_rep	mRNA	2722136	2725218	.	+	.	ID=Os02t0149500-01;Name=Os02t0149500-01;Locus_id=Os02g0149500;Note=Conserved hypothetical protein.;Transcript_evidence=AK109901 (DDBJ%2C Best hit);ORF_evidence=A3A359 (UniProt);NIAS_FLcDNA=002-149-F09;Oryzabase=17574;Expression=AK109901;TENOR=Os02t0149500-01;KEGG=Os02t0149500-01
Chr02	irgsp1_rep	five_prime_UTR	2722136	2722240	.	+	.	Parent=Os02t0149500-01
Chr02	irgsp1_rep	five_prime_UTR	2722325	2722387	.	+	.	Parent=Os02t0149500-01
Chr02	irgsp1_rep	five_prime_UTR	2723312	2723633	.	+	.	Parent=Os02t0149500-01
Chr02	irgsp1_rep	CDS	2723634	2724124	.	+	0	Parent=Os02t0149500-01
Chr02	irgsp1_rep	CDS	2724486	2724690	.	+	1	Parent=Os02t0149500-01
Chr02	irgsp1_rep	three_prime_UTR	2724691	2725218	.	+	.	Parent=Os02t0149500-01
Chr02	irgsp1_rep	mRNA	2728878	2734454	.	+	.	ID=Os02t0149600-01;Name=Os02t0149600-01;Locus_id=Os02g0149600;Note=Zinc finger%2C C2H2-like domain containing protein.;Transcript_evidence=AK119431 (DDBJ%2C Best hit);ORF_evidence=B8AHS1 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Arsenite-resistance protein 2 (IPR007042),Zinc finger%2C C2H2 (IPR007087),Protein of unknown function DUF3546 (IPR021933);NIAS_FLcDNA=001-133-A04;Expression=AK119431;TENOR=Os02t0149600-01;KEGG=Os02t0149600-01
Chr02	irgsp1_rep	five_prime_UTR	2728878	2728893	.	+	.	Parent=Os02t0149600-01
Chr02	irgsp1_rep	CDS	2728894	2729372	.	+	0	Parent=Os02t0149600-01
Chr02	irgsp1_rep	CDS	2729485	2729546	.	+	1	Parent=Os02t0149600-01
Chr02	irgsp1_rep	CDS	2730518	2730572	.	+	2	Parent=Os02t0149600-01
Chr02	irgsp1_rep	CDS	2730786	2730860	.	+	1	Parent=Os02t0149600-01
Chr02	irgsp1_rep	CDS	2730982	2731056	.	+	1	Parent=Os02t0149600-01
Chr02	irgsp1_rep	CDS	2731157	2731204	.	+	1	Parent=Os02t0149600-01
Chr02	irgsp1_rep	CDS	2731387	2731455	.	+	1	Parent=Os02t0149600-01
Chr02	irgsp1_rep	CDS	2731550	2732359	.	+	1	Parent=Os02t0149600-01
Chr02	irgsp1_rep	CDS	2732452	2732500	.	+	1	Parent=Os02t0149600-01
Chr02	irgsp1_rep	CDS	2733159	2733268	.	+	0	Parent=Os02t0149600-01
Chr02	irgsp1_rep	CDS	2733383	2733490	.	+	1	Parent=Os02t0149600-01
Chr02	irgsp1_rep	CDS	2733922	2733982	.	+	1	Parent=Os02t0149600-01
Chr02	irgsp1_rep	three_prime_UTR	2733983	2734454	.	+	.	Parent=Os02t0149600-01
Chr02	irgsp1_rep	mRNA	2732117	2735185	.	-	.	ID=Os02t0149650-01;Name=Os02t0149650-01;Locus_id=Os02g0149650;Note=Non-protein coding transcript.;Transcript_evidence=AK288946 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090083G06;TENOR=Os02t0149650-01
Chr02	irgsp1_rep	exon	2732117	2735185	.	-	.	Parent=Os02t0149650-01
Chr02	irgsp1_rep	mRNA	2735912	2738033	.	-	.	ID=Os02t0149700-01;Name=Os02t0149700-01;Locus_id=Os02g0149700;CGSNL Gene Symbol=EXO70G1;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN G1;Oryzabase Gene Symbol Synonym(s)=OsEXO70G1%2C OsExo70G1%2C OrysaG1_Exo70;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein G1;Note=Similar to ATEXO70G1 (exocyst subunit EXO70 family protein G1)%3B protein binding.;Transcript_evidence=AK103492 (DDBJ%2C Best hit);ORF_evidence=NP_194882.2 (RefSeq);GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exo70 exocyst complex subunit (IPR004140),Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=J033130O07;Oryzabase=20336;TENOR=Os02t0149700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	2736363	2738033	.	-	0	Parent=Os02t0149700-01
Chr02	irgsp1_rep	three_prime_UTR	2735912	2736362	.	-	.	Parent=Os02t0149700-01
Chr02	irgsp1_rep	mRNA	2735958	2738038	.	+	.	ID=Os02t0149750-00;Name=Os02t0149750-00;Locus_id=Os02g0149750;Note=Hypothetical protein.;Transcript_evidence=tplb0047g14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0149750-00
Chr02	irgsp1_rep	five_prime_UTR	2735958	2736174	.	+	.	Parent=Os02t0149750-00
Chr02	irgsp1_rep	five_prime_UTR	2736273	2737532	.	+	.	Parent=Os02t0149750-00
Chr02	irgsp1_rep	CDS	2737533	2738038	.	+	0	Parent=Os02t0149750-00
Chr02	irgsp1_rep	mRNA	2744296	2747428	.	+	.	ID=Os02t0149800-01;Name=Os02t0149800-01;Locus_id=Os02g0149800;RAP-DB Gene Symbol Synonym(s)=OsPP2C10%2C PP2C10%2C OsPP18;RAP-DB Gene Name Synonym(s)=protein phosphatase 2C10%2C protein phosphatase 2C 10%2C Protein Phosphatase18;Oryzabase Gene Symbol Synonym(s)=OsPP2C10%2C PP2C10%2C OsPP18;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C10%2C protein phosphatase 2C 10%2C Protein Phosphatase18;Note=Stress-responsive NAC1-regulated protein phosphatase%2C Drought and oxidative stress tolerance;Transcript_evidence=AK066016;ORF_evidence=Q67UX7;GO=Biological Process: protein dephosphorylation (GO:0006470),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C (IPR015655),Protein phosphatase 2C (PP2C)-like domain (IPR001932),Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222);NIAS_FLcDNA=J013047F22;Manual Curation=December 10%2C 2014;Literature_PMID=25318938,19021904;Oryzabase=17887;TENOR=Os02t0149800-01;KEGG=Os02t0149800-01
Chr02	irgsp1_rep	five_prime_UTR	2744296	2744356	.	+	.	Parent=Os02t0149800-01
Chr02	irgsp1_rep	CDS	2744357	2744583	.	+	0	Parent=Os02t0149800-01
Chr02	irgsp1_rep	CDS	2745336	2745463	.	+	1	Parent=Os02t0149800-01
Chr02	irgsp1_rep	CDS	2745555	2745653	.	+	2	Parent=Os02t0149800-01
Chr02	irgsp1_rep	CDS	2745744	2745902	.	+	2	Parent=Os02t0149800-01
Chr02	irgsp1_rep	CDS	2746127	2746213	.	+	2	Parent=Os02t0149800-01
Chr02	irgsp1_rep	CDS	2746302	2746393	.	+	2	Parent=Os02t0149800-01
Chr02	irgsp1_rep	CDS	2746631	2746705	.	+	0	Parent=Os02t0149800-01
Chr02	irgsp1_rep	CDS	2746807	2746986	.	+	0	Parent=Os02t0149800-01
Chr02	irgsp1_rep	three_prime_UTR	2746987	2747428	.	+	.	Parent=Os02t0149800-01
Chr02	irgsp1_rep	mRNA	2757660	2758714	.	+	.	ID=Os02t0149900-00;Name=Os02t0149900-00;Locus_id=Os02g0149900;CGSNL Gene Symbol=HOX26;CGSNL Gene Name=HOMEOBOX GENE 26;Oryzabase Gene Symbol Synonym(s)=Oshox26;Oryzabase Gene Name Synonym(s)=rice homeobox gene 26%2C Putative homeobox-leucine zipper protein HOX26%2C Homeodomain transcription factor HOX26%2C HD-ZIP protein HOX26;Note=Putative homeobox-leucine zipper protein HOX26.;Transcript_evidence=Q67UX6 (UniProt);ORF_evidence=Q67UX6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: transcription regulatory region sequence-specific DNA binding (GO:0000976),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Helix-turn-helix motif%2C lambda-like repressor (IPR000047),Homeobox (IPR001356),Leucine zipper%2C homeobox-associated (IPR003106),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Homeobox%2C conserved site (IPR017970);Oryzabase=8463;TENOR=Os02t0149900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	2757660	2758082	.	+	0	Parent=Os02t0149900-00
Chr02	irgsp1_rep	CDS	2758391	2758714	.	+	0	Parent=Os02t0149900-00
Chr02	irgsp1_rep	mRNA	2760942	2762882	.	-	.	ID=Os02t0150000-00;Name=Os02t0150000-00;Locus_id=Os02g0150000;Note=Conserved hypothetical protein.;Transcript_evidence=AB332052 (DDBJ%2C Best hit);ORF_evidence=NP_001045899.2 (RefSeq);TENOR=Os02t0150000-00;KEGG=Os02t0150000-00
Chr02	irgsp1_rep	CDS	2762836	2762882	.	-	0	Parent=Os02t0150000-00
Chr02	irgsp1_rep	CDS	2760942	2761416	.	-	1	Parent=Os02t0150000-00
Chr02	irgsp1_rep	mRNA	2768920	2770012	.	-	.	ID=Os02t0150100-01;Name=Os02t0150100-01;Locus_id=Os02g0150100;Oryzabase Gene Symbol Synonym(s)=OsRH35A;Oryzabase Gene Name Synonym(s)=RNA helicase 35A;Note=Similar to ATP-dependent RNA helicase DDX41.;Transcript_evidence=AK100093 (DDBJ%2C Best hit);ORF_evidence=NP_001147853.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=J023003N23;Oryzabase=19144;Expression=AK100093;TENOR=Os02t0150100-01;KEGG=Os02t0150100-01 (EC:3.6.4.13)
Chr02	irgsp1_rep	five_prime_UTR	2769910	2770012	.	-	.	Parent=Os02t0150100-01
Chr02	irgsp1_rep	CDS	2768920	2769909	.	-	0	Parent=Os02t0150100-01
Chr02	irgsp1_rep	mRNA	2766489	2769409	.	-	.	ID=Os02t0150100-02;Name=Os02t0150100-02;Locus_id=Os02g0150100;Oryzabase Gene Symbol Synonym(s)=OsRH35A;Oryzabase Gene Name Synonym(s)=RNA helicase 35A;Note=Similar to DEAD-box protein abstrakt.;Transcript_evidence=AK060595 (DDBJ%2C Best hit);ORF_evidence=NP_001147853.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026),Molecular Function: zinc ion binding (GO:0008270);InterPro=Helicase%2C C-terminal (IPR001650),Zinc finger%2C CCHC-type (IPR001878),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),Zinc finger%2C CCHC retroviral-type (IPR013084),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=001-024-F08;Oryzabase=19144;Expression=AK060595;TENOR=Os02t0150100-02;KEGG=Os02t0150100-02 (EC:3.6.4.13)
Chr02	irgsp1_rep	five_prime_UTR	2769409	2769409	.	-	.	Parent=Os02t0150100-02
Chr02	irgsp1_rep	CDS	2768891	2769408	.	-	0	Parent=Os02t0150100-02
Chr02	irgsp1_rep	CDS	2766799	2767663	.	-	1	Parent=Os02t0150100-02
Chr02	irgsp1_rep	three_prime_UTR	2766489	2766798	.	-	.	Parent=Os02t0150100-02
Chr02	irgsp1_rep	mRNA	2772169	2774685	.	-	.	ID=Os02t0150200-01;Name=Os02t0150200-01;Locus_id=Os02g0150200;Note=Conserved hypothetical protein.;Transcript_evidence=AK121324 (DDBJ%2C Best hit);ORF_evidence=B8AHS6 (UniProt);NIAS_FLcDNA=J023117A01;Expression=AK121324;TENOR=Os02t0150200-01;KEGG=Os02t0150200-01
Chr02	irgsp1_rep	five_prime_UTR	2774546	2774685	.	-	.	Parent=Os02t0150200-01
Chr02	irgsp1_rep	CDS	2774522	2774545	.	-	0	Parent=Os02t0150200-01
Chr02	irgsp1_rep	CDS	2772380	2772505	.	-	0	Parent=Os02t0150200-01
Chr02	irgsp1_rep	three_prime_UTR	2772169	2772379	.	-	.	Parent=Os02t0150200-01
Chr02	irgsp1_rep	mRNA	2772725	2773261	.	+	.	ID=Os02t0150250-00;Name=Os02t0150250-00;Locus_id=Os02g0150250;Note=Hypothetical gene.;Transcript_evidence=BT086980 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0150250-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	2772725	2773030	.	+	.	Parent=Os02t0150250-00
Chr02	irgsp1_rep	CDS	2773031	2773261	.	+	0	Parent=Os02t0150250-00
Chr02	irgsp1_rep	mRNA	2776450	2779281	.	+	.	ID=Os02t0150300-01;Name=Os02t0150300-01;Locus_id=Os02g0150300;Note=FAD-dependent pyridine nucleotide-disulphide oxidoreductase domain containing protein.;Transcript_evidence=AK120153 (DDBJ%2C Best hit);ORF_evidence=NP_001148844.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Pyridine nucleotide-disulphide oxidoreductase%2C NAD-binding domain (IPR001327),FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR013027),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013029P18;Expression=AK120153;TENOR=Os02t0150300-01;KEGG=Os02t0150300-01
Chr02	irgsp1_rep	five_prime_UTR	2776450	2777557	.	+	.	Parent=Os02t0150300-01
Chr02	irgsp1_rep	CDS	2777558	2777837	.	+	0	Parent=Os02t0150300-01
Chr02	irgsp1_rep	CDS	2777917	2778368	.	+	2	Parent=Os02t0150300-01
Chr02	irgsp1_rep	CDS	2778847	2779104	.	+	0	Parent=Os02t0150300-01
Chr02	irgsp1_rep	three_prime_UTR	2779105	2779281	.	+	.	Parent=Os02t0150300-01
Chr02	irgsp1_rep	mRNA	2781844	2783111	.	+	.	ID=Os02t0150450-00;Name=Os02t0150450-00;Locus_id=Os02g0150450;Note=Similar to OSIGBa0125M19.6 protein.;Transcript_evidence=BT018756 (DDBJ);ORF_evidence=Q00RI0 (UniProt);TENOR=Os02t0150450-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	2781844	2781980	.	+	.	Parent=Os02t0150450-00
Chr02	irgsp1_rep	CDS	2781981	2783111	.	+	0	Parent=Os02t0150450-00
Chr02	irgsp1_rep	mRNA	2787002	2789075	.	+	.	ID=Os02t0150600-01;Name=Os02t0150600-01;Locus_id=Os02g0150600;Note=Similar to Pyridine nucleotide-disulphide oxidoreductase (Fragment).;Transcript_evidence=AK105844 (DDBJ%2C Best hit);ORF_evidence=B9F2R3 (UniProt);NIAS_FLcDNA=001-203-F12;Expression=AK105844;TENOR=Os02t0150600-01;KEGG=Os02t0150600-01
Chr02	irgsp1_rep	five_prime_UTR	2787002	2787002	.	+	.	Parent=Os02t0150600-01
Chr02	irgsp1_rep	CDS	2787003	2787584	.	+	0	Parent=Os02t0150600-01
Chr02	irgsp1_rep	three_prime_UTR	2787585	2787637	.	+	.	Parent=Os02t0150600-01
Chr02	irgsp1_rep	three_prime_UTR	2787734	2788329	.	+	.	Parent=Os02t0150600-01
Chr02	irgsp1_rep	three_prime_UTR	2788545	2789075	.	+	.	Parent=Os02t0150600-01
Chr02	irgsp1_rep	mRNA	2791281	2795406	.	+	.	ID=Os02t0150700-01;Name=Os02t0150700-01;Locus_id=Os02g0150700;RAP-DB Gene Symbol Synonym(s)=OsDHSRP1;RAP-DB Gene Name Synonym(s)=Drought-%2C Heat-%2C and Salt-Induced RING Finger Protein 1;Oryzabase Gene Symbol Synonym(s)=OsRFP;Oryzabase Gene Name Synonym(s)=RING Finger Protein;Note=RING finger E3 ligase%2C Regulation of abiotic stress tolerance;Transcript_evidence=AK120070;ORF_evidence=Q0E3X1;InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841);NIAS_FLcDNA=J013003N07;Manual Curation=April 1%2C 2020;Literature_PMID=32206999;Oryzabase=21083;TENOR=Os02t0150700-01;Subcellular location=microtubule cytoskeleton (GO:0015630)
Chr02	irgsp1_rep	five_prime_UTR	2791281	2791519	.	+	.	Parent=Os02t0150700-01
Chr02	irgsp1_rep	five_prime_UTR	2792560	2792577	.	+	.	Parent=Os02t0150700-01
Chr02	irgsp1_rep	CDS	2792578	2793876	.	+	0	Parent=Os02t0150700-01
Chr02	irgsp1_rep	CDS	2793964	2794014	.	+	0	Parent=Os02t0150700-01
Chr02	irgsp1_rep	CDS	2794092	2794190	.	+	0	Parent=Os02t0150700-01
Chr02	irgsp1_rep	CDS	2794354	2794506	.	+	0	Parent=Os02t0150700-01
Chr02	irgsp1_rep	CDS	2795140	2795280	.	+	0	Parent=Os02t0150700-01
Chr02	irgsp1_rep	three_prime_UTR	2795281	2795406	.	+	.	Parent=Os02t0150700-01
Chr02	irgsp1_rep	mRNA	2798816	2803581	.	+	.	ID=Os02t0150800-01;Name=Os02t0150800-01;Locus_id=Os02g0150800;RAP-DB Gene Symbol Synonym(s)=OsZTL1;RAP-DB Gene Name Synonym(s)=ZEITLUPE 1;CGSNL Gene Symbol=ZTL1;CGSNL Gene Name=ZEITLUPE 1;Oryzabase Gene Symbol Synonym(s)=OsZTL1%2C OsFbox066%2C OsFbox66%2C Os_F0484;Oryzabase Gene Name Synonym(s)=F-box protein 66;Note=F-box protein with a LOV domain and consecutive Kelch repeats%2C Circadian clock associated-component;Transcript_evidence=AK242967;ORF_evidence=B7F9U6;GO=Molecular Function: protein binding (GO:0005515);InterPro=PAS domain superfamily (IPR035965),F-box-like domain superfamily (IPR036047),Galactose oxidase/kelch%2C beta-propeller (IPR011043),Kelch-type beta propeller (IPR015915),PAS domain (IPR000014),F-box domain (IPR001810);NIAS_FLcDNA=J090091D10;Manual Curation=October 17%2C 2017;Literature_PMID=17132630;Oryzabase=8823;TENOR=Os02t0150800-01;KEGG=Os02t0150800-01
Chr02	irgsp1_rep	five_prime_UTR	2798816	2799023	.	+	.	Parent=Os02t0150800-01
Chr02	irgsp1_rep	CDS	2799024	2799295	.	+	0	Parent=Os02t0150800-01
Chr02	irgsp1_rep	CDS	2801421	2803020	.	+	1	Parent=Os02t0150800-01
Chr02	irgsp1_rep	three_prime_UTR	2803021	2803581	.	+	.	Parent=Os02t0150800-01
Chr02	irgsp1_rep	mRNA	2804376	2807635	.	-	.	ID=Os02t0150900-01;Name=Os02t0150900-01;Locus_id=Os02g0150900;Oryzabase Gene Name Synonym(s)=DUF1644 family protein;Note=Protein of unknown function DUF1644 family protein.;Transcript_evidence=AK121424 (DDBJ%2C Best hit);ORF_evidence=Q67UW9 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Protein of unknown function DUF1644 (IPR012866),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J023134D10;Oryzabase=19988;TENOR=Os02t0150900-01
Chr02	irgsp1_rep	five_prime_UTR	2807158	2807635	.	-	.	Parent=Os02t0150900-01
Chr02	irgsp1_rep	five_prime_UTR	2806034	2806088	.	-	.	Parent=Os02t0150900-01
Chr02	irgsp1_rep	CDS	2805108	2806033	.	-	0	Parent=Os02t0150900-01
Chr02	irgsp1_rep	CDS	2804695	2804731	.	-	1	Parent=Os02t0150900-01
Chr02	irgsp1_rep	three_prime_UTR	2804376	2804694	.	-	.	Parent=Os02t0150900-01
Chr02	irgsp1_rep	mRNA	2804452	2807374	.	-	.	ID=Os02t0150900-02;Name=Os02t0150900-02;Locus_id=Os02g0150900;Oryzabase Gene Name Synonym(s)=DUF1644 family protein;Note=Protein of unknown function DUF1644 family protein.;Transcript_evidence=AK067206 (DDBJ%2C Best hit);ORF_evidence=Q67UW9 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Protein of unknown function DUF1644 (IPR012866),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J013095D10;Oryzabase=19988;Expression=AK067206;TENOR=Os02t0150900-02;KEGG=Os02t0150900-02
Chr02	irgsp1_rep	five_prime_UTR	2807158	2807374	.	-	.	Parent=Os02t0150900-02
Chr02	irgsp1_rep	five_prime_UTR	2806034	2806088	.	-	.	Parent=Os02t0150900-02
Chr02	irgsp1_rep	CDS	2805108	2806033	.	-	0	Parent=Os02t0150900-02
Chr02	irgsp1_rep	CDS	2804695	2804731	.	-	1	Parent=Os02t0150900-02
Chr02	irgsp1_rep	three_prime_UTR	2804452	2804694	.	-	.	Parent=Os02t0150900-02
Chr02	irgsp1_rep	mRNA	2804376	2807576	.	-	.	ID=Os02t0150900-03;Name=Os02t0150900-03;Locus_id=Os02g0150900;Oryzabase Gene Name Synonym(s)=DUF1644 family protein;Note=Protein of unknown function DUF1644 family protein.;Transcript_evidence=AK064982 (DDBJ%2C Best hit);ORF_evidence=Q67UW9 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Protein of unknown function DUF1644 (IPR012866),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J013001C12;Oryzabase=19988;TENOR=Os02t0150900-03
Chr02	irgsp1_rep	five_prime_UTR	2807158	2807576	.	-	.	Parent=Os02t0150900-03
Chr02	irgsp1_rep	five_prime_UTR	2806034	2806088	.	-	.	Parent=Os02t0150900-03
Chr02	irgsp1_rep	CDS	2805108	2806033	.	-	0	Parent=Os02t0150900-03
Chr02	irgsp1_rep	CDS	2804695	2804731	.	-	1	Parent=Os02t0150900-03
Chr02	irgsp1_rep	three_prime_UTR	2804376	2804694	.	-	.	Parent=Os02t0150900-03
Chr02	irgsp1_rep	mRNA	2816624	2824133	.	-	.	ID=Os02t0151100-01;Name=Os02t0151100-01;Locus_id=Os02g0151100;Note=Hypothetical conserved gene.;Transcript_evidence=AK243362 (DDBJ%2C Best hit);ORF_evidence=Q67UW6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635),Malectin-like carbohydrate-binding domain (IPR024788);NIAS_FLcDNA=J100061L20;TENOR=Os02t0151100-01;KEGG=Os02t0151100-01
Chr02	irgsp1_rep	five_prime_UTR	2823729	2824133	.	-	.	Parent=Os02t0151100-01
Chr02	irgsp1_rep	five_prime_UTR	2822581	2822668	.	-	.	Parent=Os02t0151100-01
Chr02	irgsp1_rep	CDS	2821997	2822580	.	-	0	Parent=Os02t0151100-01
Chr02	irgsp1_rep	CDS	2821208	2821692	.	-	1	Parent=Os02t0151100-01
Chr02	irgsp1_rep	CDS	2820859	2820997	.	-	2	Parent=Os02t0151100-01
Chr02	irgsp1_rep	CDS	2820659	2820730	.	-	1	Parent=Os02t0151100-01
Chr02	irgsp1_rep	CDS	2819932	2820003	.	-	1	Parent=Os02t0151100-01
Chr02	irgsp1_rep	CDS	2819768	2819848	.	-	1	Parent=Os02t0151100-01
Chr02	irgsp1_rep	CDS	2818975	2819138	.	-	1	Parent=Os02t0151100-01
Chr02	irgsp1_rep	CDS	2818609	2818829	.	-	2	Parent=Os02t0151100-01
Chr02	irgsp1_rep	CDS	2818231	2818357	.	-	0	Parent=Os02t0151100-01
Chr02	irgsp1_rep	CDS	2817805	2817867	.	-	2	Parent=Os02t0151100-01
Chr02	irgsp1_rep	CDS	2817486	2817672	.	-	2	Parent=Os02t0151100-01
Chr02	irgsp1_rep	CDS	2816880	2817342	.	-	1	Parent=Os02t0151100-01
Chr02	irgsp1_rep	three_prime_UTR	2816624	2816879	.	-	.	Parent=Os02t0151100-01
Chr02	irgsp1_rep	mRNA	2824488	2830257	.	-	.	ID=Os02t0151300-01;Name=Os02t0151300-01;Locus_id=Os02g0151300;CGSNL Gene Symbol=GH9B7;CGSNL Gene Name=GLYCOSIDE HYDROLASE 9B7;Oryzabase Gene Symbol Synonym(s)=OsGH9B7;Oryzabase Gene Name Synonym(s)=glycoside hydrolase OsGH9B7%2C glycoside hydrolase 9B7;Note=Similar to Cellulase (Fragment).;Transcript_evidence=AK120536 (DDBJ%2C Best hit);ORF_evidence=XP_002321149.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 9 (IPR001701),Six-hairpin glycosidase-like (IPR008928),Six-hairpin glycosidase (IPR012341);NIAS_FLcDNA=J013129B17;Oryzabase=11707;Expression=AK120536;TENOR=Os02t0151300-01;KEGG=Os02t0151300-01
Chr02	irgsp1_rep	five_prime_UTR	2829900	2830257	.	-	.	Parent=Os02t0151300-01
Chr02	irgsp1_rep	CDS	2829690	2829899	.	-	0	Parent=Os02t0151300-01
Chr02	irgsp1_rep	CDS	2829388	2829600	.	-	0	Parent=Os02t0151300-01
Chr02	irgsp1_rep	CDS	2828906	2829109	.	-	0	Parent=Os02t0151300-01
Chr02	irgsp1_rep	CDS	2828208	2828462	.	-	0	Parent=Os02t0151300-01
Chr02	irgsp1_rep	CDS	2824587	2825309	.	-	0	Parent=Os02t0151300-01
Chr02	irgsp1_rep	three_prime_UTR	2824488	2824586	.	-	.	Parent=Os02t0151300-01
Chr02	irgsp1_rep	mRNA	2824590	2829902	.	+	.	ID=Os02t0151350-00;Name=Os02t0151350-00;Locus_id=Os02g0151350;Note=Hypothetical protein.;Transcript_evidence=tplb0042g22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0151350-00
Chr02	irgsp1_rep	CDS	2824590	2825249	.	+	0	Parent=Os02t0151350-00
Chr02	irgsp1_rep	three_prime_UTR	2825250	2825312	.	+	.	Parent=Os02t0151350-00
Chr02	irgsp1_rep	three_prime_UTR	2828211	2828444	.	+	.	Parent=Os02t0151350-00
Chr02	irgsp1_rep	three_prime_UTR	2828889	2829088	.	+	.	Parent=Os02t0151350-00
Chr02	irgsp1_rep	three_prime_UTR	2829363	2829594	.	+	.	Parent=Os02t0151350-00
Chr02	irgsp1_rep	three_prime_UTR	2829684	2829902	.	+	.	Parent=Os02t0151350-00
Chr02	irgsp1_rep	mRNA	2838179	2842311	.	+	.	ID=Os02t0151400-01;Name=Os02t0151400-01;Locus_id=Os02g0151400;Note=Conserved hypothetical protein.;Transcript_evidence=AK101581 (DDBJ%2C Best hit);ORF_evidence=B8AHT2 (UniProt);NIAS_FLcDNA=J033050N22;Expression=AK101581;TENOR=Os02t0151400-01;KEGG=Os02t0151400-01
Chr02	irgsp1_rep	five_prime_UTR	2838179	2838472	.	+	.	Parent=Os02t0151400-01
Chr02	irgsp1_rep	CDS	2838473	2838566	.	+	0	Parent=Os02t0151400-01
Chr02	irgsp1_rep	CDS	2838654	2838796	.	+	2	Parent=Os02t0151400-01
Chr02	irgsp1_rep	CDS	2838894	2839030	.	+	0	Parent=Os02t0151400-01
Chr02	irgsp1_rep	CDS	2841157	2841633	.	+	1	Parent=Os02t0151400-01
Chr02	irgsp1_rep	CDS	2841721	2842090	.	+	1	Parent=Os02t0151400-01
Chr02	irgsp1_rep	three_prime_UTR	2842091	2842311	.	+	.	Parent=Os02t0151400-01
Chr02	irgsp1_rep	mRNA	2840789	2841082	.	-	.	ID=Os02t0151501-00;Name=Os02t0151501-00;Locus_id=Os02g0151501;Note=Similar to SUI1 protein.;Transcript_evidence=GU565696 (DDBJ);ORF_evidence=Q84LW9 (UniProt);GO=Biological Process: translational initiation (GO:0006413),Molecular Function: translation initiation factor activity (GO:0003743);InterPro=Translation initiation factor SUI1 (IPR001950);TENOR=Os02t0151501-00
Chr02	irgsp1_rep	five_prime_UTR	2841044	2841082	.	-	.	Parent=Os02t0151501-00
Chr02	irgsp1_rep	CDS	2840957	2841043	.	-	0	Parent=Os02t0151501-00
Chr02	irgsp1_rep	CDS	2840789	2840875	.	-	0	Parent=Os02t0151501-00
Chr02	irgsp1_rep	mRNA	2846549	2847428	.	+	.	ID=Os02t0151600-00;Name=Os02t0151600-00;Locus_id=Os02g0151600;Note=Ketol-acid reductoisomerase%2C chloroplast precursor (EC 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase).;Transcript_evidence=ab initio prediction;ORF_evidence=B6TF69 (UniProt);GO=Biological Process: cellular amino acid biosynthetic process (GO:0008652),Biological Process: branched chain family amino acid biosynthetic process (GO:0009082),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ketol-acid reductoisomerase activity (GO:0004455),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Acetohydroxy acid isomeroreductase (IPR013023),Acetohydroxy acid isomeroreductase%2C catalytic (IPR013116),NAD(P)-binding domain (IPR016040);TENOR=Os02t0151600-00;KEGG=Os02t0151600-00 (EC:1.1.1.86)
Chr02	irgsp1_rep	CDS	2846549	2846623	.	+	0	Parent=Os02t0151600-00
Chr02	irgsp1_rep	CDS	2846887	2846952	.	+	0	Parent=Os02t0151600-00
Chr02	irgsp1_rep	CDS	2847288	2847428	.	+	0	Parent=Os02t0151600-00
Chr02	irgsp1_rep	mRNA	2850259	2862114	.	-	.	ID=Os02t0151800-01;Name=Os02t0151800-01;Locus_id=Os02g0151800;Note=Similar to Ca2+/calmodulin-dependent protein kinase phosphatase.;Transcript_evidence=AK242865 (DDBJ%2C Best hit);ORF_evidence=B4F8Y6 (UniProt);NIAS_FLcDNA=J090075E01;TENOR=Os02t0151800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	2861303	2862114	.	-	.	Parent=Os02t0151800-01
Chr02	irgsp1_rep	five_prime_UTR	2861152	2861178	.	-	.	Parent=Os02t0151800-01
Chr02	irgsp1_rep	CDS	2861023	2861151	.	-	0	Parent=Os02t0151800-01
Chr02	irgsp1_rep	three_prime_UTR	2860360	2861022	.	-	.	Parent=Os02t0151800-01
Chr02	irgsp1_rep	three_prime_UTR	2860146	2860273	.	-	.	Parent=Os02t0151800-01
Chr02	irgsp1_rep	three_prime_UTR	2859889	2859983	.	-	.	Parent=Os02t0151800-01
Chr02	irgsp1_rep	three_prime_UTR	2859481	2859565	.	-	.	Parent=Os02t0151800-01
Chr02	irgsp1_rep	three_prime_UTR	2859342	2859392	.	-	.	Parent=Os02t0151800-01
Chr02	irgsp1_rep	three_prime_UTR	2859165	2859227	.	-	.	Parent=Os02t0151800-01
Chr02	irgsp1_rep	three_prime_UTR	2859023	2859067	.	-	.	Parent=Os02t0151800-01
Chr02	irgsp1_rep	three_prime_UTR	2857795	2857905	.	-	.	Parent=Os02t0151800-01
Chr02	irgsp1_rep	three_prime_UTR	2856734	2856846	.	-	.	Parent=Os02t0151800-01
Chr02	irgsp1_rep	three_prime_UTR	2856451	2856544	.	-	.	Parent=Os02t0151800-01
Chr02	irgsp1_rep	three_prime_UTR	2855792	2855862	.	-	.	Parent=Os02t0151800-01
Chr02	irgsp1_rep	three_prime_UTR	2854947	2855041	.	-	.	Parent=Os02t0151800-01
Chr02	irgsp1_rep	three_prime_UTR	2854264	2854341	.	-	.	Parent=Os02t0151800-01
Chr02	irgsp1_rep	three_prime_UTR	2853485	2853877	.	-	.	Parent=Os02t0151800-01
Chr02	irgsp1_rep	three_prime_UTR	2852816	2852888	.	-	.	Parent=Os02t0151800-01
Chr02	irgsp1_rep	three_prime_UTR	2851092	2851266	.	-	.	Parent=Os02t0151800-01
Chr02	irgsp1_rep	three_prime_UTR	2850259	2850612	.	-	.	Parent=Os02t0151800-01
Chr02	irgsp1_rep	mRNA	2865058	2869031	.	+	.	ID=Os02t0152200-01;Name=Os02t0152200-01;Locus_id=Os02g0152200;Note=Protein of unknown function DUF1677%2C Oryza sativa family protein.;Transcript_evidence=AK070155 (DDBJ%2C Best hit);ORF_evidence=A2X0Z5 (UniProt);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);NIAS_FLcDNA=J023047M11;Expression=AK070155;TENOR=Os02t0152200-01;KEGG=Os02t0152200-01
Chr02	irgsp1_rep	five_prime_UTR	2865058	2865196	.	+	.	Parent=Os02t0152200-01
Chr02	irgsp1_rep	five_prime_UTR	2865279	2865317	.	+	.	Parent=Os02t0152200-01
Chr02	irgsp1_rep	CDS	2865318	2866361	.	+	0	Parent=Os02t0152200-01
Chr02	irgsp1_rep	three_prime_UTR	2866362	2868322	.	+	.	Parent=Os02t0152200-01
Chr02	irgsp1_rep	three_prime_UTR	2868522	2869031	.	+	.	Parent=Os02t0152200-01
Chr02	irgsp1_rep	mRNA	2865107	2868827	.	+	.	ID=Os02t0152200-02;Name=Os02t0152200-02;Locus_id=Os02g0152200;Note=Protein of unknown function DUF1677%2C Oryza sativa family protein.;Transcript_evidence=AK068770 (DDBJ%2C Best hit);ORF_evidence=A2X0Z5 (UniProt);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);NIAS_FLcDNA=J013169P07;Expression=AK068770;TENOR=Os02t0152200-02;KEGG=Os02t0152200-02
Chr02	irgsp1_rep	five_prime_UTR	2865107	2865196	.	+	.	Parent=Os02t0152200-02
Chr02	irgsp1_rep	five_prime_UTR	2865279	2865317	.	+	.	Parent=Os02t0152200-02
Chr02	irgsp1_rep	CDS	2865318	2866361	.	+	0	Parent=Os02t0152200-02
Chr02	irgsp1_rep	three_prime_UTR	2866362	2867649	.	+	.	Parent=Os02t0152200-02
Chr02	irgsp1_rep	three_prime_UTR	2867732	2867864	.	+	.	Parent=Os02t0152200-02
Chr02	irgsp1_rep	three_prime_UTR	2867967	2868112	.	+	.	Parent=Os02t0152200-02
Chr02	irgsp1_rep	three_prime_UTR	2868205	2868322	.	+	.	Parent=Os02t0152200-02
Chr02	irgsp1_rep	three_prime_UTR	2868522	2868827	.	+	.	Parent=Os02t0152200-02
Chr02	irgsp1_rep	mRNA	2869670	2874062	.	+	.	ID=Os02t0152300-01;Name=Os02t0152300-01;Locus_id=Os02g0152300;CGSNL Gene Symbol=RLCK61;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 61;Oryzabase Gene Symbol Synonym(s)=OsRLCK61;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 61;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK069368 (DDBJ%2C Best hit);ORF_evidence=B8AHT6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: response to stress (GO:0006950),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),UspA (IPR006016),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023014P05;Oryzabase=18777;Expression=AK069368;TENOR=Os02t0152300-01;KEGG=Os02t0152300-01
Chr02	irgsp1_rep	five_prime_UTR	2869670	2869749	.	+	.	Parent=Os02t0152300-01
Chr02	irgsp1_rep	CDS	2869750	2870047	.	+	0	Parent=Os02t0152300-01
Chr02	irgsp1_rep	CDS	2870452	2870573	.	+	2	Parent=Os02t0152300-01
Chr02	irgsp1_rep	CDS	2870830	2870951	.	+	0	Parent=Os02t0152300-01
Chr02	irgsp1_rep	CDS	2871081	2871262	.	+	1	Parent=Os02t0152300-01
Chr02	irgsp1_rep	CDS	2871357	2871402	.	+	2	Parent=Os02t0152300-01
Chr02	irgsp1_rep	CDS	2871535	2871613	.	+	1	Parent=Os02t0152300-01
Chr02	irgsp1_rep	CDS	2871702	2871779	.	+	0	Parent=Os02t0152300-01
Chr02	irgsp1_rep	CDS	2871888	2872472	.	+	0	Parent=Os02t0152300-01
Chr02	irgsp1_rep	CDS	2872919	2873659	.	+	0	Parent=Os02t0152300-01
Chr02	irgsp1_rep	CDS	2873796	2873870	.	+	0	Parent=Os02t0152300-01
Chr02	irgsp1_rep	three_prime_UTR	2873871	2874062	.	+	.	Parent=Os02t0152300-01
Chr02	irgsp1_rep	mRNA	2874951	2876254	.	+	.	ID=Os02t0152400-01;Name=Os02t0152400-01;Locus_id=Os02g0152400;RAP-DB Gene Symbol Synonym(s)=RbcS1%2C OsRBCS1%2C OsRbcS1;RAP-DB Gene Name Synonym(s)=RuBisCO small subunit 1%2C Ribulose-1%2C 5-Bisphosphate Carboxylase/Oxygenase Small Subunit 1;CGSNL Gene Symbol=RBCS1;CGSNL Gene Name=RUBISCO SMALL SUBUNIT 1;Oryzabase Gene Symbol Synonym(s)=RbcS1%2C OsRBCS1%2C OsRbcS1;Oryzabase Gene Name Synonym(s)=RuBisCO small subunit 1%2C Ribulose-1%2C 5-Bisphosphate Carboxylase/Oxygenase Small Subunit 1%2C ribulose bisphosphate carboxylase small chain 1;Note=Rubisco small subunit 1%2C Reguration of Rubisco catalytic activity;Transcript_evidence=AK059909;ORF_evidence=Q67IU5;InterPro=Ribulose bisphosphate carboxylase%2C small chain (IPR024681),Ribulose bisphosphate carboxylase small chain%2C domain (IPR000894);NIAS_FLcDNA=006-209-C06;Manual Curation=January 24%2C 2014;Literature_PMID=24254313;Oryzabase=12042;TENOR=Os02t0152400-01;KEGG=Os02t0152400-01 (EC:4.1.1.39)
Chr02	irgsp1_rep	five_prime_UTR	2874951	2875086	.	+	.	Parent=Os02t0152400-01
Chr02	irgsp1_rep	CDS	2875087	2875242	.	+	0	Parent=Os02t0152400-01
Chr02	irgsp1_rep	CDS	2875403	2875534	.	+	0	Parent=Os02t0152400-01
Chr02	irgsp1_rep	CDS	2875680	2875943	.	+	0	Parent=Os02t0152400-01
Chr02	irgsp1_rep	three_prime_UTR	2875944	2876254	.	+	.	Parent=Os02t0152400-01
Chr02	irgsp1_rep	mRNA	2876561	2882177	.	-	.	ID=Os02t0152500-01;Name=Os02t0152500-01;Locus_id=Os02g0152500;RAP-DB Gene Symbol Synonym(s)=LC2%2C OsLC2%2C OsVIL2%2C OsVIL3;RAP-DB Gene Name Synonym(s)=leaf inclination2%2C Leaf Inclination 2%2C VIN3-LIKE 2%2C VERNALIZATION INSENSITIVE 3-LIKE 3;CGSNL Gene Symbol=LC2;CGSNL Gene Name=LEAF INCLINATION 2;Oryzabase Gene Symbol Synonym(s)=OsLC2%2C OsVIL2%2C VIL2%2C OsVIL3;Oryzabase Gene Name Synonym(s)=leaf inclination2%2C Leaf Inclination 2%2C VIN3-LIKE 2%2C VERNALIZATION INSENSITIVE 3-LIKE 2%2C VERNALIZATION INSENSITIVE 3-LIKE 3;Note=Chromatin remodeling factor%2C Protein containing PHD domain%2C FNIII domain and VID domain%2C Positive regulator of flowering%2C Regulation of leaf angle;Transcript_evidence=AK101341;ORF_evidence=Q67IU4;GO=Molecular Function: protein binding (GO:0005515);InterPro=Fibronectin%2C type III (IPR003961);NIAS_FLcDNA=J033034J20;Manual Curation=May 22%2C 2014;Literature_PMID=23083333,22973062,20644566;Oryzabase=11843;TENOR=Os02t0152500-01;KEGG=Os02t0152500-01
Chr02	irgsp1_rep	five_prime_UTR	2882019	2882177	.	-	.	Parent=Os02t0152500-01
Chr02	irgsp1_rep	CDS	2882000	2882018	.	-	0	Parent=Os02t0152500-01
Chr02	irgsp1_rep	CDS	2879864	2880551	.	-	2	Parent=Os02t0152500-01
Chr02	irgsp1_rep	CDS	2878559	2878863	.	-	1	Parent=Os02t0152500-01
Chr02	irgsp1_rep	CDS	2877244	2878481	.	-	2	Parent=Os02t0152500-01
Chr02	irgsp1_rep	three_prime_UTR	2876561	2877243	.	-	.	Parent=Os02t0152500-01
Chr02	irgsp1_rep	mRNA	2876559	2877024	.	-	.	ID=Os02t0152500-02;Name=Os02t0152500-02;Locus_id=Os02g0152500;CGSNL Gene Symbol=LC2;CGSNL Gene Name=LEAF INCLINATION 2;Oryzabase Gene Symbol Synonym(s)=OsLC2%2C OsVIL2%2C VIL2%2C OsVIL3;Oryzabase Gene Name Synonym(s)=leaf inclination2%2C Leaf Inclination 2%2C VIN3-LIKE 2%2C VERNALIZATION INSENSITIVE 3-LIKE 2%2C VERNALIZATION INSENSITIVE 3-LIKE 3;Note=Non-protein coding transcript.;Transcript_evidence=AK062072 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-044-E10;Oryzabase=11843;TENOR=Os02t0152500-02
Chr02	irgsp1_rep	exon	2876559	2877024	.	-	.	Parent=Os02t0152500-02
Chr02	irgsp1_rep	mRNA	2898897	2903751	.	-	.	ID=Os02t0152600-01;Name=Os02t0152600-01;Locus_id=Os02g0152600;Note=Protein of unknown function DUF2343 domain containing protein.;Transcript_evidence=AK073007 (DDBJ%2C Best hit);ORF_evidence=Q3T5V8 (UniProt);InterPro=Protein of unknown function DUF2343 (IPR018786);NIAS_FLcDNA=J023143M19;Expression=AK073007;TENOR=Os02t0152600-01;KEGG=Os02t0152600-01
Chr02	irgsp1_rep	five_prime_UTR	2903542	2903751	.	-	.	Parent=Os02t0152600-01
Chr02	irgsp1_rep	CDS	2903323	2903541	.	-	0	Parent=Os02t0152600-01
Chr02	irgsp1_rep	CDS	2903152	2903216	.	-	0	Parent=Os02t0152600-01
Chr02	irgsp1_rep	CDS	2902934	2903032	.	-	1	Parent=Os02t0152600-01
Chr02	irgsp1_rep	CDS	2901837	2901884	.	-	1	Parent=Os02t0152600-01
Chr02	irgsp1_rep	CDS	2901669	2901738	.	-	1	Parent=Os02t0152600-01
Chr02	irgsp1_rep	CDS	2900929	2901000	.	-	0	Parent=Os02t0152600-01
Chr02	irgsp1_rep	CDS	2900681	2900809	.	-	0	Parent=Os02t0152600-01
Chr02	irgsp1_rep	CDS	2899313	2899456	.	-	0	Parent=Os02t0152600-01
Chr02	irgsp1_rep	three_prime_UTR	2898897	2899312	.	-	.	Parent=Os02t0152600-01
Chr02	irgsp1_rep	mRNA	2904358	2906571	.	-	.	ID=Os02t0152700-01;Name=Os02t0152700-01;Locus_id=Os02g0152700;Note=Similar to DNA-directed RNA polymerase.;Transcript_evidence=AK063373 (DDBJ%2C Best hit);ORF_evidence=B9F2S6 (UniProt);GO=Biological Process: amine metabolic process (GO:0009308),Molecular Function: copper ion binding (GO:0005507),Molecular Function: quinone binding (GO:0048038);InterPro=Copper amine oxidase%2C N2/N3-terminal (IPR015801),Protein of unknown function DUF3223 (IPR021602);NIAS_FLcDNA=001-114-E07;TENOR=Os02t0152700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	2905811	2906571	.	-	0	Parent=Os02t0152700-01
Chr02	irgsp1_rep	CDS	2905524	2905632	.	-	1	Parent=Os02t0152700-01
Chr02	irgsp1_rep	CDS	2905028	2905408	.	-	0	Parent=Os02t0152700-01
Chr02	irgsp1_rep	three_prime_UTR	2904358	2905027	.	-	.	Parent=Os02t0152700-01
Chr02	irgsp1_rep	mRNA	2912568	2912869	.	+	.	ID=Os02t0152750-00;Name=Os02t0152750-00;Locus_id=Os02g0152750;Note=Non-protein coding transcript.;Transcript_evidence=EU944670 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0152750-00
Chr02	irgsp1_rep	exon	2912568	2912869	.	+	.	Parent=Os02t0152750-00
Chr02	irgsp1_rep	mRNA	2913665	2919109	.	-	.	ID=Os02t0152800-01;Name=Os02t0152800-01;Locus_id=Os02g0152800;Note=RNA polymerase Rpb1%2C domain 1 containing protein.;Transcript_evidence=AK073943 (DDBJ%2C Best hit);ORF_evidence=B9F2S6 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899);InterPro=RNA polymerase%2C alpha subunit (IPR000722),RNA polymerase%2C N-terminal (IPR006592),RNA polymerase Rpb1%2C domain 1 (IPR007080);NIAS_FLcDNA=J033075E12;TENOR=Os02t0152800-01
Chr02	irgsp1_rep	five_prime_UTR	2918939	2919109	.	-	.	Parent=Os02t0152800-01
Chr02	irgsp1_rep	five_prime_UTR	2917948	2917951	.	-	.	Parent=Os02t0152800-01
Chr02	irgsp1_rep	CDS	2917864	2917947	.	-	0	Parent=Os02t0152800-01
Chr02	irgsp1_rep	CDS	2916792	2916918	.	-	0	Parent=Os02t0152800-01
Chr02	irgsp1_rep	CDS	2916567	2916682	.	-	2	Parent=Os02t0152800-01
Chr02	irgsp1_rep	CDS	2916419	2916475	.	-	0	Parent=Os02t0152800-01
Chr02	irgsp1_rep	CDS	2915583	2915753	.	-	0	Parent=Os02t0152800-01
Chr02	irgsp1_rep	CDS	2915330	2915488	.	-	0	Parent=Os02t0152800-01
Chr02	irgsp1_rep	CDS	2915086	2915241	.	-	0	Parent=Os02t0152800-01
Chr02	irgsp1_rep	CDS	2913665	2914259	.	-	0	Parent=Os02t0152800-01
Chr02	irgsp1_rep	mRNA	2922461	2925073	.	-	.	ID=Os02t0152900-01;Name=Os02t0152900-01;Locus_id=Os02g0152900;RAP-DB Gene Symbol Synonym(s)=YL1;RAP-DB Gene Name Synonym(s)=yellow leaf 1;CGSNL Gene Symbol=YL1;CGSNL Gene Name=YELLOW LEAF 1;Oryzabase Gene Name Synonym(s)=yellow leaf 1;Note=Nucleus-encoded chloroplast protein%2C Chloroplast development%2C Biogenesis of chloroplast ATP synthase;Transcript_evidence=AK061136;ORF_evidence=Q0E3V2;NIAS_FLcDNA=006-208-B03;Manual Curation=September 7%2C 2016;Literature_PMID=27585744;Oryzabase=21410;Expression=AK061136;TENOR=Os02t0152900-01;KEGG=Os02t0152900-01
Chr02	irgsp1_rep	five_prime_UTR	2924939	2925073	.	-	.	Parent=Os02t0152900-01
Chr02	irgsp1_rep	five_prime_UTR	2924740	2924841	.	-	.	Parent=Os02t0152900-01
Chr02	irgsp1_rep	CDS	2924652	2924739	.	-	0	Parent=Os02t0152900-01
Chr02	irgsp1_rep	CDS	2924300	2924397	.	-	2	Parent=Os02t0152900-01
Chr02	irgsp1_rep	CDS	2923282	2923369	.	-	0	Parent=Os02t0152900-01
Chr02	irgsp1_rep	CDS	2922839	2923062	.	-	2	Parent=Os02t0152900-01
Chr02	irgsp1_rep	three_prime_UTR	2922461	2922838	.	-	.	Parent=Os02t0152900-01
Chr02	irgsp1_rep	mRNA	2927568	2932130	.	-	.	ID=Os02t0152950-00;Name=Os02t0152950-00;Locus_id=Os02g0152950;Note=Hypothetical protein.;Transcript_evidence=tplb0022i14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0152950-00
Chr02	irgsp1_rep	five_prime_UTR	2931412	2932130	.	-	.	Parent=Os02t0152950-00
Chr02	irgsp1_rep	five_prime_UTR	2930999	2931131	.	-	.	Parent=Os02t0152950-00
Chr02	irgsp1_rep	five_prime_UTR	2930818	2930922	.	-	.	Parent=Os02t0152950-00
Chr02	irgsp1_rep	five_prime_UTR	2930675	2930735	.	-	.	Parent=Os02t0152950-00
Chr02	irgsp1_rep	five_prime_UTR	2930445	2930518	.	-	.	Parent=Os02t0152950-00
Chr02	irgsp1_rep	five_prime_UTR	2929344	2929826	.	-	.	Parent=Os02t0152950-00
Chr02	irgsp1_rep	five_prime_UTR	2929033	2929249	.	-	.	Parent=Os02t0152950-00
Chr02	irgsp1_rep	five_prime_UTR	2928779	2928947	.	-	.	Parent=Os02t0152950-00
Chr02	irgsp1_rep	CDS	2928773	2928778	.	-	0	Parent=Os02t0152950-00
Chr02	irgsp1_rep	CDS	2928561	2928679	.	-	0	Parent=Os02t0152950-00
Chr02	irgsp1_rep	CDS	2928354	2928450	.	-	1	Parent=Os02t0152950-00
Chr02	irgsp1_rep	CDS	2927793	2927924	.	-	0	Parent=Os02t0152950-00
Chr02	irgsp1_rep	three_prime_UTR	2927787	2927792	.	-	.	Parent=Os02t0152950-00
Chr02	irgsp1_rep	three_prime_UTR	2927568	2927630	.	-	.	Parent=Os02t0152950-00
Chr02	irgsp1_rep	mRNA	2928922	2932167	.	+	.	ID=Os02t0153000-01;Name=Os02t0153000-01;Locus_id=Os02g0153000;Note=Protein of unknown function DUF547 domain containing protein.;Transcript_evidence=AK064473 (DDBJ%2C Best hit);ORF_evidence=Q3T5W0 (UniProt);InterPro=Domain of unknown function DUF547 (IPR006869);NIAS_FLcDNA=002-110-H09;Expression=AK064473;TENOR=Os02t0153000-01;KEGG=Os02t0153000-01
Chr02	irgsp1_rep	five_prime_UTR	2928922	2928947	.	+	.	Parent=Os02t0153000-01
Chr02	irgsp1_rep	five_prime_UTR	2929033	2929077	.	+	.	Parent=Os02t0153000-01
Chr02	irgsp1_rep	CDS	2929078	2929236	.	+	0	Parent=Os02t0153000-01
Chr02	irgsp1_rep	CDS	2929324	2929811	.	+	0	Parent=Os02t0153000-01
Chr02	irgsp1_rep	CDS	2930431	2930530	.	+	1	Parent=Os02t0153000-01
Chr02	irgsp1_rep	CDS	2930688	2930747	.	+	0	Parent=Os02t0153000-01
Chr02	irgsp1_rep	CDS	2930833	2930925	.	+	0	Parent=Os02t0153000-01
Chr02	irgsp1_rep	CDS	2931009	2931128	.	+	0	Parent=Os02t0153000-01
Chr02	irgsp1_rep	CDS	2931409	2931753	.	+	0	Parent=Os02t0153000-01
Chr02	irgsp1_rep	three_prime_UTR	2931754	2932167	.	+	.	Parent=Os02t0153000-01
Chr02	irgsp1_rep	mRNA	2933952	2937379	.	-	.	ID=Os02t0153100-01;Name=Os02t0153100-01;Locus_id=Os02g0153100;RAP-DB Gene Symbol Synonym(s)=LRK8;RAP-DB Gene Name Synonym(s)=leucine-rich receptor-like kinase 8;Oryzabase Gene Symbol Synonym(s)=LRK8;Oryzabase Gene Name Synonym(s)=leucine-rich receptor-like kinase 8;Note=Leucine-rich repeat receptor-like kinase;Transcript_evidence=AY714497,AY756174 (Oryza rufipogon);ORF_evidence=Q66RK3,Q5UD34 (Oryza rufipogon);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=Leucine-rich repeat domain superfamily (IPR032675),Protein kinase-like domain superfamily (IPR011009),Leucine-rich repeat-containing N-terminal%2C plant-type (IPR013210),Protein kinase domain (IPR000719),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat (IPR001611),Leucine rich repeat 4 (IPR025875),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);Manual Curation=September 11%2C 2018;Literature_PMID=30158538,16606701;Oryzabase=20172;TENOR=Os02t0153100-00;KEGG=Os02t0153100-00
Chr02	irgsp1_rep	five_prime_UTR	2937232	2937379	.	-	.	Parent=Os02t0153100-01
Chr02	irgsp1_rep	CDS	2934076	2937231	.	-	0	Parent=Os02t0153100-01
Chr02	irgsp1_rep	three_prime_UTR	2933952	2934075	.	-	.	Parent=Os02t0153100-01
Chr02	irgsp1_rep	mRNA	2938046	2941437	.	-	.	ID=Os02t0153200-01;Name=Os02t0153200-01;Locus_id=Os02g0153200;RAP-DB Gene Symbol Synonym(s)=LRK7;RAP-DB Gene Name Synonym(s)=leucine-rich receptor-like kinase 7;Oryzabase Gene Symbol Synonym(s)=LRK7;Oryzabase Gene Name Synonym(s)=leucine-rich receptor-like kinase 7;Note=Leucine-rich repeat receptor-like kinase;Transcript_evidence=AK111680,AY756174 (Oryza rufipogon);ORF_evidence=Q0E3U9,Q5UD35 (Oryza rufipogon);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=Leucine-rich repeat domain superfamily (IPR032675),Protein kinase-like domain superfamily (IPR011009),Leucine-rich repeat-containing N-terminal%2C plant-type (IPR013210),Protein kinase domain (IPR000719),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat (IPR001611),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J013168E03;Manual Curation=September 11%2C 2018;Literature_PMID=30158538,16606701;Oryzabase=20171;Expression=AK111680;TENOR=Os02t0153200-01;KEGG=Os02t0153200-01
Chr02	irgsp1_rep	five_prime_UTR	2941397	2941437	.	-	.	Parent=Os02t0153200-01
Chr02	irgsp1_rep	CDS	2938244	2941396	.	-	0	Parent=Os02t0153200-01
Chr02	irgsp1_rep	three_prime_UTR	2938046	2938243	.	-	.	Parent=Os02t0153200-01
Chr02	irgsp1_rep	mRNA	2944661	2949240	.	+	.	ID=Os02t0153300-01;Name=Os02t0153300-01;Locus_id=Os02g0153300;Note=Hypothetical protein.;Transcript_evidence=AK121860 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033102P14;Expression=AK121860;TENOR=Os02t0153300-01;KEGG=Os02t0153300-01
Chr02	irgsp1_rep	five_prime_UTR	2944661	2944784	.	+	.	Parent=Os02t0153300-01
Chr02	irgsp1_rep	five_prime_UTR	2945643	2948199	.	+	.	Parent=Os02t0153300-01
Chr02	irgsp1_rep	CDS	2948200	2948856	.	+	0	Parent=Os02t0153300-01
Chr02	irgsp1_rep	three_prime_UTR	2948857	2949240	.	+	.	Parent=Os02t0153300-01
Chr02	irgsp1_rep	mRNA	2947023	2949245	.	+	.	ID=Os02t0153300-02;Name=Os02t0153300-02;Locus_id=Os02g0153300;Note=Hypothetical protein.;Transcript_evidence=AK108027 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-137-A09;Expression=AK108027;TENOR=Os02t0153300-02;KEGG=Os02t0153300-02
Chr02	irgsp1_rep	five_prime_UTR	2947023	2948199	.	+	.	Parent=Os02t0153300-02
Chr02	irgsp1_rep	CDS	2948200	2948856	.	+	0	Parent=Os02t0153300-02
Chr02	irgsp1_rep	three_prime_UTR	2948857	2949245	.	+	.	Parent=Os02t0153300-02
Chr02	irgsp1_rep	mRNA	2945512	2948974	.	-	.	ID=Os02t0153400-01;Name=Os02t0153400-01;Locus_id=Os02g0153400;RAP-DB Gene Symbol Synonym(s)=LRK6;RAP-DB Gene Name Synonym(s)=leucine-rich receptor-like kinase 6;Oryzabase Gene Symbol Synonym(s)=LRK6;Oryzabase Gene Name Synonym(s)=leucine-rich receptor-like kinase 6;Note=Leucine-rich repeat receptor-like kinase;Transcript_evidence=AY756174 (Oryza rufipogon),AY714494 (93-11);ORF_evidence=Q67IT7,Q5UD36 (Oryza rufipogon);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=Leucine-rich repeat domain superfamily (IPR032675),Protein kinase-like domain superfamily (IPR011009),Leucine-rich repeat-containing N-terminal%2C plant-type (IPR013210),Protein kinase domain (IPR000719),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat (IPR001611),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);Manual Curation=September 11%2C 2018;Literature_PMID=30158538,21854687,16606701;Oryzabase=13657;TENOR=Os02t0153400-00;KEGG=Os02t0153400-00
Chr02	irgsp1_rep	five_prime_UTR	2948805	2948974	.	-	.	Parent=Os02t0153400-01
Chr02	irgsp1_rep	CDS	2945613	2948804	.	-	0	Parent=Os02t0153400-01
Chr02	irgsp1_rep	three_prime_UTR	2945512	2945612	.	-	.	Parent=Os02t0153400-01
Chr02	irgsp1_rep	mRNA	2952129	2955766	.	+	.	ID=Os02t0153450-01;Name=Os02t0153450-01;Locus_id=Os02g0153450;Note=Hypothetical gene.;Transcript_evidence=AK318520 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J043036N09;TENOR=Os02t0153450-01;KEGG=Os02t0153450-01
Chr02	irgsp1_rep	five_prime_UTR	2952129	2953684	.	+	.	Parent=Os02t0153450-01
Chr02	irgsp1_rep	CDS	2953685	2953942	.	+	0	Parent=Os02t0153450-01
Chr02	irgsp1_rep	three_prime_UTR	2953943	2955766	.	+	.	Parent=Os02t0153450-01
Chr02	irgsp1_rep	mRNA	2952436	2955585	.	-	.	ID=Os02t0153500-01;Name=Os02t0153500-01;Locus_id=Os02g0153500;RAP-DB Gene Symbol Synonym(s)=LRK5;RAP-DB Gene Name Synonym(s)=leucine-rich receptor-like kinase 5;Oryzabase Gene Symbol Synonym(s)=LRK5%2C OsLRK5;Oryzabase Gene Name Synonym(s)=leucine-rich receptor-like kinase 5;Note=Leucine-rich repeat receptor-like kinase;Transcript_evidence=AY756174 (Oryza rufipogon);ORF_evidence=Q67IT6,Q5UD37 (Oryza rufipogon);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=Leucine-rich repeat domain superfamily (IPR032675),Protein kinase-like domain superfamily (IPR011009),Leucine-rich repeat-containing N-terminal%2C plant-type (IPR013210),Protein kinase domain (IPR000719),Serine-threonine/tyrosine-protein kinase%2C catalytic domain (IPR001245),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat (IPR001611),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);Manual Curation=September 10%2C 2018;Literature_PMID=30158538,16606701;Oryzabase=20170;TENOR=Os02t0153500-00
Chr02	irgsp1_rep	CDS	2952436	2955585	.	-	0	Parent=Os02t0153500-01
Chr02	irgsp1_rep	mRNA	2957940	2960127	.	+	.	ID=Os02t0153600-01;Name=Os02t0153600-01;Locus_id=Os02g0153600;Note=Hypothetical protein.;Transcript_evidence=AK073693 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033059G18;Expression=AK073693;TENOR=Os02t0153600-01;KEGG=Os02t0153600-01
Chr02	irgsp1_rep	five_prime_UTR	2957940	2958224	.	+	.	Parent=Os02t0153600-01
Chr02	irgsp1_rep	CDS	2958225	2958279	.	+	0	Parent=Os02t0153600-01
Chr02	irgsp1_rep	CDS	2958952	2959271	.	+	2	Parent=Os02t0153600-01
Chr02	irgsp1_rep	three_prime_UTR	2959272	2960127	.	+	.	Parent=Os02t0153600-01
Chr02	irgsp1_rep	mRNA	2958786	2962177	.	-	.	ID=Os02t0153700-01;Name=Os02t0153700-01;Locus_id=Os02g0153700;RAP-DB Gene Symbol Synonym(s)=LRK4;RAP-DB Gene Name Synonym(s)=leucine-rich receptor-like kinase 4;Oryzabase Gene Symbol Synonym(s)=LRK4%2C OsLRK4;Oryzabase Gene Name Synonym(s)=leucine-rich receptor-like kinase 4;Note=Leucine-rich repeat receptor-like kinase;Transcript_evidence=AK100376,AY756174 (Oryza rufipogon);ORF_evidence=Q67IT5,Q5UD38 (Oryza rufipogon);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=Leucine-rich repeat domain superfamily (IPR032675),Protein kinase-like domain superfamily (IPR011009),Leucine-rich repeat-containing N-terminal%2C plant-type (IPR013210),Protein kinase domain (IPR000719),Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J023084M06;Manual Curation=September 10%2C 2018;Literature_PMID=30158538,16606701;Oryzabase=20169;Expression=AK100376;TENOR=Os02t0153700-01;KEGG=Os02t0153700-01
Chr02	irgsp1_rep	five_prime_UTR	2962079	2962177	.	-	.	Parent=Os02t0153700-01
Chr02	irgsp1_rep	CDS	2958935	2962078	.	-	0	Parent=Os02t0153700-01
Chr02	irgsp1_rep	three_prime_UTR	2958786	2958934	.	-	.	Parent=Os02t0153700-01
Chr02	irgsp1_rep	mRNA	2965242	2968614	.	-	.	ID=Os02t0153900-01;Name=Os02t0153900-01;Locus_id=Os02g0153900;RAP-DB Gene Symbol Synonym(s)=LRK3;RAP-DB Gene Name Synonym(s)=leucine-rich receptor-like kinase 3;Oryzabase Gene Symbol Synonym(s)=LRK3;Oryzabase Gene Name Synonym(s)=leucine-rich receptor-like kinase 3;Note=Leucine-rich repeat receptor-like kinase;Transcript_evidence=AK111546,AY756174 (Oryza rufipogon);ORF_evidence=Q67IT2,Q5UD39 (Oryza rufipogon);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=Leucine-rich repeat domain superfamily (IPR032675),Protein kinase-like domain superfamily (IPR011009),Leucine-rich repeat-containing N-terminal%2C plant-type (IPR013210),Protein kinase domain (IPR000719),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat (IPR001611),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J013047P09;Manual Curation=September 7%2C 2018;Literature_PMID=30158538,16606701;Oryzabase=20168;Expression=AK111546;TENOR=Os02t0153900-01;KEGG=Os02t0153900-01
Chr02	irgsp1_rep	five_prime_UTR	2968559	2968614	.	-	.	Parent=Os02t0153900-01
Chr02	irgsp1_rep	CDS	2965403	2968558	.	-	0	Parent=Os02t0153900-01
Chr02	irgsp1_rep	three_prime_UTR	2965242	2965402	.	-	.	Parent=Os02t0153900-01
Chr02	irgsp1_rep	mRNA	2972242	2975382	.	-	.	ID=Os02t0154000-01;Name=Os02t0154000-01;Locus_id=Os02g0154000;RAP-DB Gene Symbol Synonym(s)=LRK2;RAP-DB Gene Name Synonym(s)=leucine-rich receptor-like kinase 2;Oryzabase Gene Symbol Synonym(s)=LRK2;Oryzabase Gene Name Synonym(s)=leucine-rich receptor-like kinase 2;Note=Leucine-rich repeat receptor-like kinase%2C Positive regulation of the drought stress response and tiller development;Transcript_evidence=AY756174 (Oryza rufipogon);ORF_evidence=Q67IT1,Q5UD40 (Oryza rufipogon);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=Leucine-rich repeat domain superfamily (IPR032675),Protein kinase-like domain superfamily (IPR011009),Leucine-rich repeat-containing N-terminal%2C plant-type (IPR013210),Protein kinase domain (IPR000719),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271);Manual Curation=September 7%2C 2018;Literature_PMID=28182328,16606701;Oryzabase=20167;TENOR=Os02t0154000-00;Subcellular location=plasma membrane (GO:0005886)
Chr02	irgsp1_rep	CDS	2972242	2975382	.	-	0	Parent=Os02t0154000-01
Chr02	irgsp1_rep	mRNA	2978158	2985406	.	+	.	ID=Os02t0154100-01;Name=Os02t0154100-01;Locus_id=Os02g0154100;RAP-DB Gene Symbol Synonym(s)=LAIR;RAP-DB Gene Name Synonym(s)=LRK Antisense Intergenic RNA;CGSNL Gene Symbol=LAIR;CGSNL Gene Name=LRK ANTISENSE INTERGENIC RNA;Oryzabase Gene Name Synonym(s)=LRK Antisense Intergenic RNA%2C Long noncoding RNA LAIR;Note=Antisense long noncoding RNA%2C Regulation of sense LRK gene cluster expression%2C Regulation of grain yield;Transcript_evidence=AK106847,JX512726 (Minghui 63);ORF_evidence=None;NIAS_FLcDNA=002-118-A06;Manual Curation=September 6%2C 2018;Literature_PMID=30158538;Oryzabase=22587;Expression=AK106847;TENOR=Os02t0154100-01;KEGG=Os02t0154100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	exon	2978158	2978544	.	+	.	Parent=Os02t0154100-01
Chr02	irgsp1_rep	exon	2982628	2982828	.	+	.	Parent=Os02t0154100-01
Chr02	irgsp1_rep	exon	2982956	2983193	.	+	.	Parent=Os02t0154100-01
Chr02	irgsp1_rep	exon	2983797	2984089	.	+	.	Parent=Os02t0154100-01
Chr02	irgsp1_rep	exon	2984579	2984703	.	+	.	Parent=Os02t0154100-01
Chr02	irgsp1_rep	exon	2984826	2985406	.	+	.	Parent=Os02t0154100-01
Chr02	irgsp1_rep	mRNA	2978855	2982356	.	-	.	ID=Os02t0154200-01;Name=Os02t0154200-01;Locus_id=Os02g0154200;RAP-DB Gene Symbol Synonym(s)=LRK1;RAP-DB Gene Name Synonym(s)=leucine-rich repeat receptor kinase 1;Oryzabase Gene Symbol Synonym(s)=LRK1%2C OsLRK1;Oryzabase Gene Name Synonym(s)=leucine-rich receptor-like kinase 1;Note=Leucine-rich repeat receptor kinase%2C Regulation of grain yield;Transcript_evidence=AK111871,JX512718 (Minghui 63),AY756174 (Oryza rufipogon);ORF_evidence=Q67IS9,K4PL36 (indica),Q5UD41 (Oryza rufipogon);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=Leucine-rich repeat domain superfamily (IPR032675),Protein kinase-like domain superfamily (IPR011009),Leucine-rich repeat-containing N-terminal%2C plant-type (IPR013210),Protein kinase domain (IPR000719),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat (IPR001611),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J033041F16;Manual Curation=September 7%2C 2018;Literature_PMID=30158538,16606701;Oryzabase=20173;Expression=AK111871;TENOR=Os02t0154200-01;KEGG=Os02t0154200-01
Chr02	irgsp1_rep	five_prime_UTR	2982181	2982356	.	-	.	Parent=Os02t0154200-01
Chr02	irgsp1_rep	CDS	2979031	2982180	.	-	0	Parent=Os02t0154200-01
Chr02	irgsp1_rep	three_prime_UTR	2978855	2979030	.	-	.	Parent=Os02t0154200-01
Chr02	irgsp1_rep	mRNA	2980587	2982399	.	+	.	ID=Os02t0154300-01;Name=Os02t0154300-01;Locus_id=Os02g0154300;Note=Hypothetical protein.;Transcript_evidence=AK111975 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-003-F11;TENOR=Os02t0154300-01;KEGG=Os02t0154300-01
Chr02	irgsp1_rep	five_prime_UTR	2980587	2980709	.	+	.	Parent=Os02t0154300-01
Chr02	irgsp1_rep	five_prime_UTR	2980794	2981893	.	+	.	Parent=Os02t0154300-01
Chr02	irgsp1_rep	CDS	2981894	2982169	.	+	0	Parent=Os02t0154300-01
Chr02	irgsp1_rep	three_prime_UTR	2982170	2982399	.	+	.	Parent=Os02t0154300-01
Chr02	irgsp1_rep	mRNA	2995581	3001388	.	+	.	ID=Os02t0154600-01;Name=Os02t0154600-01;Locus_id=Os02g0154600;Note=Domain of unknown function DUF250 domain containing protein.;Transcript_evidence=AK102276 (DDBJ%2C Best hit);ORF_evidence=GeneMark;InterPro=Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=J033089D19;Expression=AK102276;TENOR=Os02t0154600-01;KEGG=Os02t0154600-01
Chr02	irgsp1_rep	five_prime_UTR	2995581	2995733	.	+	.	Parent=Os02t0154600-01
Chr02	irgsp1_rep	CDS	2996781	2997890	.	+	0	Parent=Os02t0154600-01
Chr02	irgsp1_rep	three_prime_UTR	2997891	2998314	.	+	.	Parent=Os02t0154600-01
Chr02	irgsp1_rep	three_prime_UTR	2998630	2998716	.	+	.	Parent=Os02t0154600-01
Chr02	irgsp1_rep	three_prime_UTR	2999041	2999495	.	+	.	Parent=Os02t0154600-01
Chr02	irgsp1_rep	three_prime_UTR	2999572	3000384	.	+	.	Parent=Os02t0154600-01
Chr02	irgsp1_rep	three_prime_UTR	3000542	3000678	.	+	.	Parent=Os02t0154600-01
Chr02	irgsp1_rep	three_prime_UTR	3000747	3001388	.	+	.	Parent=Os02t0154600-01
Chr02	irgsp1_rep	mRNA	2995586	2999838	.	+	.	ID=Os02t0154600-02;Name=Os02t0154600-02;Locus_id=Os02g0154600;Note=Domain of unknown function DUF250 domain containing protein.;Transcript_evidence=AK071490 (DDBJ%2C Best hit);ORF_evidence=Q10Q03 (UniProt);InterPro=Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=J023096O12;TENOR=Os02t0154600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	2995586	2995676	.	+	.	Parent=Os02t0154600-02
Chr02	irgsp1_rep	CDS	2995677	2995733	.	+	0	Parent=Os02t0154600-02
Chr02	irgsp1_rep	CDS	2996781	2997890	.	+	0	Parent=Os02t0154600-02
Chr02	irgsp1_rep	three_prime_UTR	2997891	2998314	.	+	.	Parent=Os02t0154600-02
Chr02	irgsp1_rep	three_prime_UTR	2998630	2998716	.	+	.	Parent=Os02t0154600-02
Chr02	irgsp1_rep	three_prime_UTR	2999041	2999838	.	+	.	Parent=Os02t0154600-02
Chr02	irgsp1_rep	mRNA	3028276	3031655	.	+	.	ID=Os02t0155000-01;Name=Os02t0155000-01;Locus_id=Os02g0155000;Note=Hypothetical protein.;Transcript_evidence=AK106999 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-120-C01;Expression=AK106999;TENOR=Os02t0155000-01;KEGG=Os02t0155000-01
Chr02	irgsp1_rep	five_prime_UTR	3028276	3028443	.	+	.	Parent=Os02t0155000-01
Chr02	irgsp1_rep	five_prime_UTR	3028565	3028648	.	+	.	Parent=Os02t0155000-01
Chr02	irgsp1_rep	five_prime_UTR	3029894	3030524	.	+	.	Parent=Os02t0155000-01
Chr02	irgsp1_rep	five_prime_UTR	3030619	3030721	.	+	.	Parent=Os02t0155000-01
Chr02	irgsp1_rep	CDS	3030722	3031138	.	+	0	Parent=Os02t0155000-01
Chr02	irgsp1_rep	three_prime_UTR	3031139	3031655	.	+	.	Parent=Os02t0155000-01
Chr02	irgsp1_rep	mRNA	3037553	3040481	.	-	.	ID=Os02t0155300-01;Name=Os02t0155300-01;Locus_id=Os02g0155300;Note=Hypothetical protein.;Transcript_evidence=AK067517 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013111E23;Expression=AK067517;TENOR=Os02t0155300-01;KEGG=Os02t0155300-01
Chr02	irgsp1_rep	five_prime_UTR	3038010	3040481	.	-	.	Parent=Os02t0155300-01
Chr02	irgsp1_rep	five_prime_UTR	3037907	3037909	.	-	.	Parent=Os02t0155300-01
Chr02	irgsp1_rep	CDS	3037580	3037906	.	-	0	Parent=Os02t0155300-01
Chr02	irgsp1_rep	three_prime_UTR	3037553	3037579	.	-	.	Parent=Os02t0155300-01
Chr02	irgsp1_rep	mRNA	3037622	3039869	.	+	.	ID=Os02t0155400-01;Name=Os02t0155400-01;Locus_id=Os02g0155400;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=AK107566 (DDBJ%2C Best hit);ORF_evidence=B9F2T2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=002-130-C08;Expression=AK107566;TENOR=Os02t0155400-01;KEGG=Os02t0155400-01
Chr02	irgsp1_rep	five_prime_UTR	3037622	3037667	.	+	.	Parent=Os02t0155400-01
Chr02	irgsp1_rep	CDS	3037668	3039851	.	+	0	Parent=Os02t0155400-01
Chr02	irgsp1_rep	three_prime_UTR	3039852	3039869	.	+	.	Parent=Os02t0155400-01
Chr02	irgsp1_rep	mRNA	3048887	3050896	.	-	.	ID=Os02t0155600-00;Name=Os02t0155600-00;Locus_id=Os02g0155600;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9F2T3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591);TENOR=Os02t0155600-00;KEGG=Os02t0155600-00
Chr02	irgsp1_rep	CDS	3048887	3050896	.	-	0	Parent=Os02t0155600-00
Chr02	irgsp1_rep	mRNA	3059566	3061394	.	-	.	ID=Os02t0155700-00;Name=Os02t0155700-00;Locus_id=Os02g0155700;Note=Hypothetical conserved gene.;Transcript_evidence=AK369574 (DDBJ);ORF_evidence=NP_001172809.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);TENOR=Os02t0155700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	3059577	3061394	.	-	0	Parent=Os02t0155700-00
Chr02	irgsp1_rep	three_prime_UTR	3059566	3059576	.	-	.	Parent=Os02t0155700-00
Chr02	irgsp1_rep	mRNA	3065811	3072625	.	-	.	ID=Os02t0155900-00;Name=Os02t0155900-00;Locus_id=Os02g0155900;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=AK371462 (DDBJ);ORF_evidence=A3A3A7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);TENOR=Os02t0155900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	3072512	3072625	.	-	.	Parent=Os02t0155900-00
Chr02	irgsp1_rep	CDS	3071798	3072511	.	-	0	Parent=Os02t0155900-00
Chr02	irgsp1_rep	three_prime_UTR	3071666	3071797	.	-	.	Parent=Os02t0155900-00
Chr02	irgsp1_rep	three_prime_UTR	3071094	3071573	.	-	.	Parent=Os02t0155900-00
Chr02	irgsp1_rep	three_prime_UTR	3066264	3066374	.	-	.	Parent=Os02t0155900-00
Chr02	irgsp1_rep	three_prime_UTR	3065811	3066104	.	-	.	Parent=Os02t0155900-00
Chr02	irgsp1_rep	mRNA	3076962	3078826	.	+	.	ID=Os02t0156000-00;Name=Os02t0156000-00;Locus_id=Os02g0156000;CGSNL Gene Symbol=RLCK62;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 62;Oryzabase Gene Symbol Synonym(s)=OsRLCK62;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 62;Note=Similar to H0201G08.2 protein.;Transcript_evidence=AK368276 (DDBJ);ORF_evidence=Q25AD0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18778;TENOR=Os02t0156000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	3076962	3077706	.	+	0	Parent=Os02t0156000-00
Chr02	irgsp1_rep	CDS	3078015	3078826	.	+	2	Parent=Os02t0156000-00
Chr02	irgsp1_rep	mRNA	3080552	3082828	.	+	.	ID=Os02t0156100-01;Name=Os02t0156100-01;Locus_id=Os02g0156100;Note=Conserved hypothetical protein.;Transcript_evidence=AK058877 (DDBJ%2C Best hit);ORF_evidence=A3A3A6 (UniProt);NIAS_FLcDNA=001-006-H12;TENOR=Os02t0156100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	3080552	3080802	.	+	.	Parent=Os02t0156100-01
Chr02	irgsp1_rep	CDS	3080803	3081122	.	+	0	Parent=Os02t0156100-01
Chr02	irgsp1_rep	CDS	3081946	3082072	.	+	1	Parent=Os02t0156100-01
Chr02	irgsp1_rep	three_prime_UTR	3082073	3082127	.	+	.	Parent=Os02t0156100-01
Chr02	irgsp1_rep	three_prime_UTR	3082472	3082828	.	+	.	Parent=Os02t0156100-01
Chr02	irgsp1_rep	mRNA	3084942	3087128	.	-	.	ID=Os02t0156200-00;Name=Os02t0156200-00;Locus_id=Os02g0156200;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3A3A7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);TENOR=Os02t0156200-00
Chr02	irgsp1_rep	CDS	3084942	3087128	.	-	0	Parent=Os02t0156200-00
Chr02	irgsp1_rep	mRNA	3086330	3087545	.	+	.	ID=Os02t0156300-01;Name=Os02t0156300-01;Locus_id=Os02g0156300;Note=Similar to Serine/threonine-protein kinase BRI1-like 2 precursor (EC 2.7.1.37) (BRASSINOSTEROID INSENSITIVE 1-like protein 2) (Protein VASCULAR HIGHWAY 1).;Transcript_evidence=AK058558 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-017-D07;Expression=AK058558;TENOR=Os02t0156300-01;KEGG=Os02t0156300-01 (EC:2.7.1.37)
Chr02	irgsp1_rep	five_prime_UTR	3086330	3086524	.	+	.	Parent=Os02t0156300-01
Chr02	irgsp1_rep	five_prime_UTR	3086682	3086721	.	+	.	Parent=Os02t0156300-01
Chr02	irgsp1_rep	CDS	3086722	3086799	.	+	0	Parent=Os02t0156300-01
Chr02	irgsp1_rep	CDS	3086887	3087150	.	+	0	Parent=Os02t0156300-01
Chr02	irgsp1_rep	three_prime_UTR	3087151	3087545	.	+	.	Parent=Os02t0156300-01
Chr02	irgsp1_rep	mRNA	3092570	3095103	.	-	.	ID=Os02t0156400-01;Name=Os02t0156400-01;Locus_id=Os02g0156400;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=AK100447 (DDBJ%2C Best hit);ORF_evidence=B8AI84 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J023090H21;Expression=AK100447;TENOR=Os02t0156400-01;KEGG=Os02t0156400-01
Chr02	irgsp1_rep	five_prime_UTR	3095022	3095103	.	-	.	Parent=Os02t0156400-01
Chr02	irgsp1_rep	CDS	3092865	3095021	.	-	0	Parent=Os02t0156400-01
Chr02	irgsp1_rep	three_prime_UTR	3092570	3092864	.	-	.	Parent=Os02t0156400-01
Chr02	irgsp1_rep	mRNA	3093895	3095152	.	+	.	ID=Os02t0156500-01;Name=Os02t0156500-01;Locus_id=Os02g0156500;Note=Hypothetical protein.;Transcript_evidence=AK059616 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-030-G05;Expression=AK059616;TENOR=Os02t0156500-01;KEGG=Os02t0156500-01
Chr02	irgsp1_rep	five_prime_UTR	3093895	3094614	.	+	.	Parent=Os02t0156500-01
Chr02	irgsp1_rep	CDS	3094615	3094911	.	+	0	Parent=Os02t0156500-01
Chr02	irgsp1_rep	three_prime_UTR	3094912	3095152	.	+	.	Parent=Os02t0156500-01
Chr02	irgsp1_rep	mRNA	3097247	3099450	.	-	.	ID=Os02t0156600-00;Name=Os02t0156600-00;Locus_id=Os02g0156600;Note=Hypothetical conserved gene.;Transcript_evidence=AK364410 (DDBJ);ORF_evidence=A2X129 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);TENOR=Os02t0156600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	3099380	3099450	.	-	.	Parent=Os02t0156600-00
Chr02	irgsp1_rep	CDS	3097247	3099379	.	-	0	Parent=Os02t0156600-00
Chr02	irgsp1_rep	mRNA	3102631	3104794	.	-	.	ID=Os02t0156633-00;Name=Os02t0156633-00;Locus_id=Os02g0156633;Note=Hypothetical conserved gene.;Transcript_evidence=BT042319 (DDBJ);ORF_evidence=B9F2U3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);TENOR=Os02t0156633-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	3104695	3104794	.	-	.	Parent=Os02t0156633-00
Chr02	irgsp1_rep	CDS	3102631	3104694	.	-	0	Parent=Os02t0156633-00
Chr02	irgsp1_rep	mRNA	3106065	3109343	.	+	.	ID=Os02t0156700-01;Name=Os02t0156700-01;Locus_id=Os02g0156700;Note=Hypothetical protein.;Transcript_evidence=AK073014 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023150B13;TENOR=Os02t0156700-01;KEGG=Os02t0156700-01
Chr02	irgsp1_rep	five_prime_UTR	3106065	3108247	.	+	.	Parent=Os02t0156700-01
Chr02	irgsp1_rep	CDS	3108248	3108688	.	+	0	Parent=Os02t0156700-01
Chr02	irgsp1_rep	three_prime_UTR	3108689	3109343	.	+	.	Parent=Os02t0156700-01
Chr02	irgsp1_rep	mRNA	3106371	3108579	.	-	.	ID=Os02t0156800-01;Name=Os02t0156800-01;Locus_id=Os02g0156800;Note=Leucine-rich repeat-containing N-terminal%2C type 2 domain containing protein.;Transcript_evidence=AK067358 (DDBJ%2C Best hit);ORF_evidence=B9F2U1 (UniProt);InterPro=Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J013104A04;TENOR=Os02t0156800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	3108166	3108579	.	-	0	Parent=Os02t0156800-01
Chr02	irgsp1_rep	CDS	3107945	3107980	.	-	0	Parent=Os02t0156800-01
Chr02	irgsp1_rep	three_prime_UTR	3106371	3107944	.	-	.	Parent=Os02t0156800-01
Chr02	irgsp1_rep	mRNA	3113436	3120818	.	+	.	ID=Os02t0157000-00;Name=Os02t0157000-00;Locus_id=Os02g0157000;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=AK371462 (DDBJ);ORF_evidence=NP_001172810.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);TENOR=Os02t0157000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	3113436	3114222	.	+	0	Parent=Os02t0157000-00
Chr02	irgsp1_rep	CDS	3119476	3119486	.	+	2	Parent=Os02t0157000-00
Chr02	irgsp1_rep	three_prime_UTR	3119487	3119695	.	+	.	Parent=Os02t0157000-00
Chr02	irgsp1_rep	three_prime_UTR	3119787	3120362	.	+	.	Parent=Os02t0157000-00
Chr02	irgsp1_rep	three_prime_UTR	3120520	3120818	.	+	.	Parent=Os02t0157000-00
Chr02	irgsp1_rep	mRNA	3124459	3126612	.	-	.	ID=Os02t0157100-00;Name=Os02t0157100-00;Locus_id=Os02g0157100;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=AK371462 (DDBJ);ORF_evidence=XP_002453319.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);TENOR=Os02t0157100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	3126570	3126612	.	-	.	Parent=Os02t0157100-00
Chr02	irgsp1_rep	CDS	3125796	3126569	.	-	0	Parent=Os02t0157100-00
Chr02	irgsp1_rep	three_prime_UTR	3125573	3125795	.	-	.	Parent=Os02t0157100-00
Chr02	irgsp1_rep	three_prime_UTR	3124886	3125480	.	-	.	Parent=Os02t0157100-00
Chr02	irgsp1_rep	three_prime_UTR	3124459	3124726	.	-	.	Parent=Os02t0157100-00
Chr02	irgsp1_rep	mRNA	3127100	3129256	.	-	.	ID=Os02t0157200-00;Name=Os02t0157200-00;Locus_id=Os02g0157200;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001045949.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);TENOR=Os02t0157200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	3127100	3129256	.	-	0	Parent=Os02t0157200-00
Chr02	irgsp1_rep	mRNA	3132469	3137551	.	+	.	ID=Os02t0157300-01;Name=Os02t0157300-01;Locus_id=Os02g0157300;Note=Hypothetical protein.;Transcript_evidence=AK102244 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033088E14;Expression=AK102244;TENOR=Os02t0157300-01;KEGG=Os02t0157300-01
Chr02	irgsp1_rep	five_prime_UTR	3132469	3134653	.	+	.	Parent=Os02t0157300-01
Chr02	irgsp1_rep	CDS	3134654	3135046	.	+	0	Parent=Os02t0157300-01
Chr02	irgsp1_rep	CDS	3135154	3135237	.	+	0	Parent=Os02t0157300-01
Chr02	irgsp1_rep	three_prime_UTR	3135238	3135390	.	+	.	Parent=Os02t0157300-01
Chr02	irgsp1_rep	three_prime_UTR	3135707	3135817	.	+	.	Parent=Os02t0157300-01
Chr02	irgsp1_rep	three_prime_UTR	3136721	3137551	.	+	.	Parent=Os02t0157300-01
Chr02	irgsp1_rep	mRNA	3132469	3136023	.	+	.	ID=Os02t0157300-02;Name=Os02t0157300-02;Locus_id=Os02g0157300;Note=Hypothetical protein.;Transcript_evidence=AK099976 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013128K19;TENOR=Os02t0157300-02
Chr02	irgsp1_rep	five_prime_UTR	3132469	3132625	.	+	.	Parent=Os02t0157300-02
Chr02	irgsp1_rep	five_prime_UTR	3132713	3134653	.	+	.	Parent=Os02t0157300-02
Chr02	irgsp1_rep	CDS	3134654	3135109	.	+	0	Parent=Os02t0157300-02
Chr02	irgsp1_rep	three_prime_UTR	3135110	3135390	.	+	.	Parent=Os02t0157300-02
Chr02	irgsp1_rep	three_prime_UTR	3135707	3136023	.	+	.	Parent=Os02t0157300-02
Chr02	irgsp1_rep	mRNA	3132777	3134985	.	-	.	ID=Os02t0157400-01;Name=Os02t0157400-01;Locus_id=Os02g0157400;Note=Leucine-rich repeat-containing N-terminal%2C type 2 domain containing protein.;Transcript_evidence=AK067358 (DDBJ%2C Best hit);ORF_evidence=B9F2U1 (UniProt);InterPro=Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J013104A04;TENOR=Os02t0157400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	3134572	3134985	.	-	0	Parent=Os02t0157400-01
Chr02	irgsp1_rep	CDS	3134351	3134386	.	-	0	Parent=Os02t0157400-01
Chr02	irgsp1_rep	three_prime_UTR	3132777	3134350	.	-	.	Parent=Os02t0157400-01
Chr02	irgsp1_rep	mRNA	3136270	3138125	.	-	.	ID=Os02t0157501-00;Name=Os02t0157501-00;Locus_id=Os02g0157501;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=AK369574 (DDBJ);ORF_evidence=longestORF;GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);TENOR=Os02t0157501-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	3137966	3138125	.	-	.	Parent=Os02t0157501-00
Chr02	irgsp1_rep	CDS	3137565	3137965	.	-	0	Parent=Os02t0157501-00
Chr02	irgsp1_rep	CDS	3137177	3137324	.	-	1	Parent=Os02t0157501-00
Chr02	irgsp1_rep	three_prime_UTR	3136270	3137176	.	-	.	Parent=Os02t0157501-00
Chr02	irgsp1_rep	mRNA	3142202	3144143	.	+	.	ID=Os02t0157600-01;Name=Os02t0157600-01;Locus_id=Os02g0157600;RAP-DB Gene Symbol Synonym(s)=OsHAC4%2C STR8;RAP-DB Gene Name Synonym(s)=High As Content 4%2C SULFURTRANSFERASE 8;CGSNL Gene Symbol=STR8;CGSNL Gene Name=SULFURTRANSFERASE 8;Oryzabase Gene Symbol Synonym(s)=OsStr8%2C OsHAC4%2C HAC4;Oryzabase Gene Name Synonym(s)=Sulfurtransferase 8%2C High As Content 4;Note=Arsenate (As(V)) reductase%2C Rhodanase-like protein%2C As(V) tolerance%2C Control of arsenic (As) accumulation;Transcript_evidence=AK243231;ORF_evidence=A0A0P0VF26;InterPro=Rhodanese-like domain (IPR001763);NIAS_FLcDNA=J100044P04;Manual Curation=April 17%2C 2017;Literature_PMID=28407265;Oryzabase=12058;TENOR=Os02t0157600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	3142202	3142220	.	+	.	Parent=Os02t0157600-01
Chr02	irgsp1_rep	CDS	3142221	3142243	.	+	0	Parent=Os02t0157600-01
Chr02	irgsp1_rep	CDS	3142378	3142467	.	+	1	Parent=Os02t0157600-01
Chr02	irgsp1_rep	CDS	3142671	3142747	.	+	1	Parent=Os02t0157600-01
Chr02	irgsp1_rep	CDS	3142900	3142970	.	+	2	Parent=Os02t0157600-01
Chr02	irgsp1_rep	CDS	3143583	3143636	.	+	0	Parent=Os02t0157600-01
Chr02	irgsp1_rep	CDS	3143733	3143819	.	+	0	Parent=Os02t0157600-01
Chr02	irgsp1_rep	three_prime_UTR	3143820	3144143	.	+	.	Parent=Os02t0157600-01
Chr02	irgsp1_rep	mRNA	3142294	3144660	.	+	.	ID=Os02t0157600-02;Name=Os02t0157600-02;Locus_id=Os02g0157600;RAP-DB Gene Symbol Synonym(s)=STR8;RAP-DB Gene Name Synonym(s)=SULFURTRANSFERASE 8;CGSNL Gene Symbol=STR8;CGSNL Gene Name=SULFURTRANSFERASE 8;Oryzabase Gene Symbol Synonym(s)=OsStr8%2C OsHAC4%2C HAC4;Oryzabase Gene Name Synonym(s)=Sulfurtransferase 8%2C High As Content 4;Note=Rhodanese-like domain containing protein;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;InterPro=Rhodanese-like domain (IPR001763);Manual Curation=April 17%2C 2017;Literature_PMID=28407265;Oryzabase=12058
Chr02	irgsp1_rep	five_prime_UTR	3142294	3142366	.	+	.	Parent=Os02t0157600-02
Chr02	irgsp1_rep	CDS	3142367	3142467	.	+	0	Parent=Os02t0157600-02
Chr02	irgsp1_rep	CDS	3142671	3142747	.	+	1	Parent=Os02t0157600-02
Chr02	irgsp1_rep	CDS	3142900	3142970	.	+	2	Parent=Os02t0157600-02
Chr02	irgsp1_rep	CDS	3143583	3143636	.	+	0	Parent=Os02t0157600-02
Chr02	irgsp1_rep	CDS	3143733	3143819	.	+	0	Parent=Os02t0157600-02
Chr02	irgsp1_rep	three_prime_UTR	3143820	3144660	.	+	.	Parent=Os02t0157600-02
Chr02	irgsp1_rep	mRNA	3144129	3144623	.	-	.	ID=Os02t0157700-01;Name=Os02t0157700-01;Locus_id=Os02g0157700;Note=Non-protein coding transcript.;Transcript_evidence=AK242201 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J075166P08;TENOR=Os02t0157700-01
Chr02	irgsp1_rep	exon	3144129	3144623	.	-	.	Parent=Os02t0157700-01
Chr02	irgsp1_rep	mRNA	3158639	3160602	.	+	.	ID=Os02t0157900-00;Name=Os02t0157900-00;Locus_id=Os02g0157900;Note=Hypothetical conserved gene.;Transcript_evidence=AB244282 (DDBJ%2C Best hit);ORF_evidence=Q6ET49 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),RNA recognition motif 2 (IPR007201),Nucleotide-binding%2C alpha-beta plait (IPR012677);TENOR=Os02t0157900-00;KEGG=Os02t0157900-00
Chr02	irgsp1_rep	CDS	3158639	3159321	.	+	0	Parent=Os02t0157900-00
Chr02	irgsp1_rep	CDS	3159462	3159578	.	+	1	Parent=Os02t0157900-00
Chr02	irgsp1_rep	CDS	3160066	3160228	.	+	1	Parent=Os02t0157900-00
Chr02	irgsp1_rep	CDS	3160396	3160602	.	+	0	Parent=Os02t0157900-00
Chr02	irgsp1_rep	mRNA	3163897	3165102	.	+	.	ID=Os02t0157950-01;Name=Os02t0157950-01;Locus_id=Os02g0157950;Note=Hypothetical gene.;Transcript_evidence=AK287559 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065023L05;TENOR=Os02t0157950-01;KEGG=Os02t0157950-01
Chr02	irgsp1_rep	five_prime_UTR	3163897	3164767	.	+	.	Parent=Os02t0157950-01
Chr02	irgsp1_rep	CDS	3164768	3165094	.	+	0	Parent=Os02t0157950-01
Chr02	irgsp1_rep	three_prime_UTR	3165095	3165102	.	+	.	Parent=Os02t0157950-01
Chr02	irgsp1_rep	mRNA	3166617	3170816	.	-	.	ID=Os02t0158100-01;Name=Os02t0158100-01;Locus_id=Os02g0158100;Note=EF hand domain containing protein.;Transcript_evidence=AK073124 (DDBJ%2C Best hit);ORF_evidence=B6U193 (UniProt);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: GTP binding (GO:0005525);InterPro=EPS15 homology (EH) (IPR000261),Dynamin%2C GTPase domain (IPR001401),EF-hand-like domain (IPR011992),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J033008E09;Expression=AK073124;TENOR=Os02t0158100-01;KEGG=Os02t0158100-01
Chr02	irgsp1_rep	five_prime_UTR	3170726	3170816	.	-	.	Parent=Os02t0158100-01
Chr02	irgsp1_rep	CDS	3170650	3170725	.	-	0	Parent=Os02t0158100-01
Chr02	irgsp1_rep	CDS	3170462	3170541	.	-	2	Parent=Os02t0158100-01
Chr02	irgsp1_rep	CDS	3170301	3170369	.	-	0	Parent=Os02t0158100-01
Chr02	irgsp1_rep	CDS	3170128	3170185	.	-	0	Parent=Os02t0158100-01
Chr02	irgsp1_rep	CDS	3169997	3170049	.	-	2	Parent=Os02t0158100-01
Chr02	irgsp1_rep	CDS	3169875	3169917	.	-	0	Parent=Os02t0158100-01
Chr02	irgsp1_rep	CDS	3169727	3169788	.	-	2	Parent=Os02t0158100-01
Chr02	irgsp1_rep	CDS	3169431	3169550	.	-	0	Parent=Os02t0158100-01
Chr02	irgsp1_rep	CDS	3169223	3169325	.	-	0	Parent=Os02t0158100-01
Chr02	irgsp1_rep	CDS	3169041	3169090	.	-	2	Parent=Os02t0158100-01
Chr02	irgsp1_rep	CDS	3168273	3168401	.	-	0	Parent=Os02t0158100-01
Chr02	irgsp1_rep	CDS	3167935	3168186	.	-	0	Parent=Os02t0158100-01
Chr02	irgsp1_rep	CDS	3167748	3167827	.	-	0	Parent=Os02t0158100-01
Chr02	irgsp1_rep	CDS	3167345	3167471	.	-	1	Parent=Os02t0158100-01
Chr02	irgsp1_rep	CDS	3167117	3167260	.	-	0	Parent=Os02t0158100-01
Chr02	irgsp1_rep	CDS	3166766	3166951	.	-	0	Parent=Os02t0158100-01
Chr02	irgsp1_rep	three_prime_UTR	3166617	3166765	.	-	.	Parent=Os02t0158100-01
Chr02	irgsp1_rep	mRNA	3166617	3166906	.	-	.	ID=Os02t0158100-02;Name=Os02t0158100-02;Locus_id=Os02g0158100;Note=Similar to EH-domain-containing protein 1.;Transcript_evidence=AK058991 (DDBJ%2C Best hit);ORF_evidence=B6U193 (UniProt);NIAS_FLcDNA=001-020-F08;Expression=AK058991;TENOR=Os02t0158100-02;KEGG=Os02t0158100-02
Chr02	irgsp1_rep	CDS	3166766	3166906	.	-	0	Parent=Os02t0158100-02
Chr02	irgsp1_rep	three_prime_UTR	3166617	3166765	.	-	.	Parent=Os02t0158100-02
Chr02	irgsp1_rep	mRNA	3166740	3170798	.	+	.	ID=Os02t0158200-00;Name=Os02t0158200-00;Locus_id=Os02g0158200;Note=Hypothetical protein.;Transcript_evidence=tplb0032i10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0158200-00
Chr02	irgsp1_rep	five_prime_UTR	3166740	3166953	.	+	.	Parent=Os02t0158200-00
Chr02	irgsp1_rep	five_prime_UTR	3167114	3167254	.	+	.	Parent=Os02t0158200-00
Chr02	irgsp1_rep	five_prime_UTR	3167335	3167369	.	+	.	Parent=Os02t0158200-00
Chr02	irgsp1_rep	CDS	3167370	3167458	.	+	0	Parent=Os02t0158200-00
Chr02	irgsp1_rep	CDS	3167734	3167827	.	+	1	Parent=Os02t0158200-00
Chr02	irgsp1_rep	CDS	3167935	3168000	.	+	0	Parent=Os02t0158200-00
Chr02	irgsp1_rep	three_prime_UTR	3168001	3168183	.	+	.	Parent=Os02t0158200-00
Chr02	irgsp1_rep	three_prime_UTR	3168270	3168404	.	+	.	Parent=Os02t0158200-00
Chr02	irgsp1_rep	three_prime_UTR	3169174	3169335	.	+	.	Parent=Os02t0158200-00
Chr02	irgsp1_rep	three_prime_UTR	3169445	3169533	.	+	.	Parent=Os02t0158200-00
Chr02	irgsp1_rep	three_prime_UTR	3169719	3169805	.	+	.	Parent=Os02t0158200-00
Chr02	irgsp1_rep	three_prime_UTR	3169978	3170047	.	+	.	Parent=Os02t0158200-00
Chr02	irgsp1_rep	three_prime_UTR	3170121	3170175	.	+	.	Parent=Os02t0158200-00
Chr02	irgsp1_rep	three_prime_UTR	3170289	3170367	.	+	.	Parent=Os02t0158200-00
Chr02	irgsp1_rep	three_prime_UTR	3170460	3170522	.	+	.	Parent=Os02t0158200-00
Chr02	irgsp1_rep	three_prime_UTR	3170630	3170798	.	+	.	Parent=Os02t0158200-00
Chr02	irgsp1_rep	mRNA	3179485	3182746	.	+	.	ID=Os02t0158300-01;Name=Os02t0158300-01;Locus_id=Os02g0158300;Oryzabase Gene Symbol Synonym(s)=OsCBSSIS1;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSSIS1%2C CBS domain containing protein OsCBSSIS1%2C Rib-5-P isomerase;Note=Sugar isomerase (SIS) domain containing protein.;Transcript_evidence=AK288027 (DDBJ%2C Best hit);ORF_evidence=XP_002876265.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: protein binding (GO:0005515),Molecular Function: sugar binding (GO:0005529),Molecular Function: isomerase activity (GO:0016853);InterPro=Cystathionine beta-synthase%2C core (IPR000644),Sugar isomerase (SIS) (IPR001347),KpsF/GutQ (IPR004800);NIAS_FLcDNA=J075131G09;Oryzabase=10341;TENOR=Os02t0158300-01;KEGG=Os02t0158300-01 (EC:5.3.1.13)
Chr02	irgsp1_rep	five_prime_UTR	3179485	3179628	.	+	.	Parent=Os02t0158300-01
Chr02	irgsp1_rep	CDS	3179629	3180282	.	+	0	Parent=Os02t0158300-01
Chr02	irgsp1_rep	CDS	3180935	3181158	.	+	0	Parent=Os02t0158300-01
Chr02	irgsp1_rep	CDS	3182341	3182497	.	+	1	Parent=Os02t0158300-01
Chr02	irgsp1_rep	three_prime_UTR	3182498	3182746	.	+	.	Parent=Os02t0158300-01
Chr02	irgsp1_rep	mRNA	3179578	3182639	.	-	.	ID=Os02t0158350-00;Name=Os02t0158350-00;Locus_id=Os02g0158350;Note=Hypothetical protein.;Transcript_evidence=tplb0053n23 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0158350-00
Chr02	irgsp1_rep	five_prime_UTR	3182345	3182639	.	-	.	Parent=Os02t0158350-00
Chr02	irgsp1_rep	five_prime_UTR	3180997	3181164	.	-	.	Parent=Os02t0158350-00
Chr02	irgsp1_rep	CDS	3180928	3180996	.	-	0	Parent=Os02t0158350-00
Chr02	irgsp1_rep	CDS	3179578	3180275	.	-	0	Parent=Os02t0158350-00
Chr02	irgsp1_rep	mRNA	3182926	3187016	.	-	.	ID=Os02t0158400-01;Name=Os02t0158400-01;Locus_id=Os02g0158400;CGSNL Gene Symbol=WHY2;CGSNL Gene Name=WHIRLY TRANSCRIPTION FACTOR 2;Oryzabase Gene Symbol Synonym(s)=OsWHY2;Oryzabase Gene Name Synonym(s)=Whirly transcription factor 2;Note=ssDNA-binding transcriptional regulator family protein.;Transcript_evidence=AK099479 (DDBJ%2C Best hit),AK061569 (DDBJ%2C Best hit),AK104768 (DDBJ%2C Best hit);ORF_evidence=B4FU36 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: binding (GO:0005488);InterPro=ssDNA-binding transcriptional regulator (IPR009044),Plant transcription factor (IPR013742);NIAS_FLcDNA=J013025B22,006-311-F08,001-039-A03;Oryzabase=23750;Expression=AK099479;TENOR=Os02t0158400-01;KEGG=Os02t0158400-01
Chr02	irgsp1_rep	five_prime_UTR	3186952	3187016	.	-	.	Parent=Os02t0158400-01
Chr02	irgsp1_rep	CDS	3186914	3186951	.	-	0	Parent=Os02t0158400-01
Chr02	irgsp1_rep	CDS	3185949	3186028	.	-	1	Parent=Os02t0158400-01
Chr02	irgsp1_rep	CDS	3185756	3185853	.	-	2	Parent=Os02t0158400-01
Chr02	irgsp1_rep	CDS	3185587	3185679	.	-	0	Parent=Os02t0158400-01
Chr02	irgsp1_rep	CDS	3184937	3185031	.	-	0	Parent=Os02t0158400-01
Chr02	irgsp1_rep	CDS	3184769	3184842	.	-	1	Parent=Os02t0158400-01
Chr02	irgsp1_rep	CDS	3184046	3184134	.	-	2	Parent=Os02t0158400-01
Chr02	irgsp1_rep	CDS	3183315	3183434	.	-	0	Parent=Os02t0158400-01
Chr02	irgsp1_rep	three_prime_UTR	3182926	3183314	.	-	.	Parent=Os02t0158400-01
Chr02	irgsp1_rep	mRNA	3187973	3190043	.	-	.	ID=Os02t0158500-00;Name=Os02t0158500-00;Locus_id=Os02g0158500;Oryzabase Gene Symbol Synonym(s)=CDC3;Oryzabase Gene Name Synonym(s)=cdc2 (cyclin-dependent kinase 2) -like gene;Note=Uncharacterized plant-specific domain 01627 containing protein.;Transcript_evidence=AK353656 (DDBJ);ORF_evidence=B6UI35 (UniProt);InterPro=Conserved hypothetical protein CHP01627 (IPR006514),Protein of unknown function DUF579 (IPR021148);Oryzabase=19593;TENOR=Os02t0158500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	3189136	3190043	.	-	0	Parent=Os02t0158500-00
Chr02	irgsp1_rep	CDS	3188104	3188374	.	-	1	Parent=Os02t0158500-00
Chr02	irgsp1_rep	three_prime_UTR	3187973	3188103	.	-	.	Parent=Os02t0158500-00
Chr02	irgsp1_rep	mRNA	3188143	3189588	.	+	.	ID=Os02t0158550-00;Name=Os02t0158550-00;Locus_id=Os02g0158550;Note=Hypothetical protein.;Transcript_evidence=tplb0026f01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0158550-00
Chr02	irgsp1_rep	five_prime_UTR	3188143	3188311	.	+	.	Parent=Os02t0158550-00
Chr02	irgsp1_rep	five_prime_UTR	3189069	3189086	.	+	.	Parent=Os02t0158550-00
Chr02	irgsp1_rep	CDS	3189087	3189588	.	+	0	Parent=Os02t0158550-00
Chr02	irgsp1_rep	mRNA	3191322	3194133	.	-	.	ID=Os02t0158600-01;Name=Os02t0158600-01;Locus_id=Os02g0158600;Note=Conserved hypothetical protein.;Transcript_evidence=AK066467 (DDBJ%2C Best hit);ORF_evidence=A2X145 (UniProt);NIAS_FLcDNA=J013067F08;Expression=AK066467;TENOR=Os02t0158600-01;KEGG=Os02t0158600-01
Chr02	irgsp1_rep	five_prime_UTR	3193960	3194133	.	-	.	Parent=Os02t0158600-01
Chr02	irgsp1_rep	CDS	3193789	3193959	.	-	0	Parent=Os02t0158600-01
Chr02	irgsp1_rep	CDS	3191524	3191889	.	-	0	Parent=Os02t0158600-01
Chr02	irgsp1_rep	three_prime_UTR	3191322	3191523	.	-	.	Parent=Os02t0158600-01
Chr02	irgsp1_rep	mRNA	3196192	3196414	.	+	.	ID=Os02t0158701-00;Name=Os02t0158701-00;Locus_id=Os02g0158701;Note=Similar to predicted protein.;Transcript_evidence=EU943426 (DDBJ);ORF_evidence=XP_002327722.1 (RefSeq);TENOR=Os02t0158701-00;KEGG=Os02t0158701-00
Chr02	irgsp1_rep	five_prime_UTR	3196192	3196249	.	+	.	Parent=Os02t0158701-00
Chr02	irgsp1_rep	CDS	3196250	3196411	.	+	0	Parent=Os02t0158701-00
Chr02	irgsp1_rep	three_prime_UTR	3196412	3196414	.	+	.	Parent=Os02t0158701-00
Chr02	irgsp1_rep	mRNA	3197174	3203105	.	+	.	ID=Os02t0158800-01;Name=Os02t0158800-01;Locus_id=Os02g0158800;Note=Protein of unknown function DUF246%2C plant family protein.;Transcript_evidence=AK119177 (DDBJ%2C Best hit),AK065389 (DDBJ%2C Best hit);ORF_evidence=NP_001152550.1 (RefSeq);InterPro=GDP-fucose protein O-fucosyltransferase (IPR019378);NIAS_FLcDNA=001-037-G06,J013021B10;Expression=AK119177;TENOR=Os02t0158800-01;KEGG=Os02t0158800-01
Chr02	irgsp1_rep	five_prime_UTR	3197174	3197253	.	+	.	Parent=Os02t0158800-01
Chr02	irgsp1_rep	CDS	3197254	3197604	.	+	0	Parent=Os02t0158800-01
Chr02	irgsp1_rep	CDS	3197682	3197732	.	+	0	Parent=Os02t0158800-01
Chr02	irgsp1_rep	CDS	3197827	3197914	.	+	0	Parent=Os02t0158800-01
Chr02	irgsp1_rep	CDS	3198662	3198741	.	+	2	Parent=Os02t0158800-01
Chr02	irgsp1_rep	CDS	3199187	3199275	.	+	0	Parent=Os02t0158800-01
Chr02	irgsp1_rep	CDS	3200103	3200222	.	+	1	Parent=Os02t0158800-01
Chr02	irgsp1_rep	CDS	3200972	3201088	.	+	1	Parent=Os02t0158800-01
Chr02	irgsp1_rep	CDS	3201292	3201435	.	+	1	Parent=Os02t0158800-01
Chr02	irgsp1_rep	CDS	3201539	3201662	.	+	1	Parent=Os02t0158800-01
Chr02	irgsp1_rep	CDS	3201774	3201965	.	+	0	Parent=Os02t0158800-01
Chr02	irgsp1_rep	CDS	3202544	3202909	.	+	0	Parent=Os02t0158800-01
Chr02	irgsp1_rep	three_prime_UTR	3202910	3203105	.	+	.	Parent=Os02t0158800-01
Chr02	irgsp1_rep	mRNA	3204086	3206332	.	+	.	ID=Os02t0158900-01;Name=Os02t0158900-01;Locus_id=Os02g0158900;Oryzabase Gene Symbol Synonym(s)=OsCBSX9;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSX9%2C CBS domain containing protein OsCBSX9;Note=Similar to SNF4.;Transcript_evidence=AK108324 (DDBJ%2C Best hit);ORF_evidence=A3A3C5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Cystathionine beta-synthase%2C core (IPR000644);NIAS_FLcDNA=002-141-H05;Oryzabase=10326;Expression=AK108324;TENOR=Os02t0158900-01;KEGG=Os02t0158900-01
Chr02	irgsp1_rep	five_prime_UTR	3204086	3204143	.	+	.	Parent=Os02t0158900-01
Chr02	irgsp1_rep	CDS	3204144	3204676	.	+	0	Parent=Os02t0158900-01
Chr02	irgsp1_rep	CDS	3205448	3206180	.	+	1	Parent=Os02t0158900-01
Chr02	irgsp1_rep	three_prime_UTR	3206181	3206332	.	+	.	Parent=Os02t0158900-01
Chr02	irgsp1_rep	mRNA	3207416	3208323	.	+	.	ID=Os02t0159000-00;Name=Os02t0159000-00;Locus_id=Os02g0159000;Note=Conserved hypothetical protein.;Transcript_evidence=EU970125 (DDBJ);ORF_evidence=Q5W685 (UniProt);TENOR=Os02t0159000-00
Chr02	irgsp1_rep	CDS	3207416	3207659	.	+	0	Parent=Os02t0159000-00
Chr02	irgsp1_rep	CDS	3207935	3208254	.	+	2	Parent=Os02t0159000-00
Chr02	irgsp1_rep	three_prime_UTR	3208255	3208323	.	+	.	Parent=Os02t0159000-00
Chr02	irgsp1_rep	mRNA	3212238	3216435	.	-	.	ID=Os02t0159100-00;Name=Os02t0159100-00;Locus_id=Os02g0159100;Note=Hypothetical protein.;Transcript_evidence=tplb0043o21 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0159100-00
Chr02	irgsp1_rep	five_prime_UTR	3215801	3216435	.	-	.	Parent=Os02t0159100-00
Chr02	irgsp1_rep	five_prime_UTR	3215680	3215726	.	-	.	Parent=Os02t0159100-00
Chr02	irgsp1_rep	CDS	3215308	3215679	.	-	0	Parent=Os02t0159100-00
Chr02	irgsp1_rep	three_prime_UTR	3214849	3215307	.	-	.	Parent=Os02t0159100-00
Chr02	irgsp1_rep	three_prime_UTR	3214580	3214750	.	-	.	Parent=Os02t0159100-00
Chr02	irgsp1_rep	three_prime_UTR	3214360	3214489	.	-	.	Parent=Os02t0159100-00
Chr02	irgsp1_rep	three_prime_UTR	3213479	3213570	.	-	.	Parent=Os02t0159100-00
Chr02	irgsp1_rep	three_prime_UTR	3213094	3213234	.	-	.	Parent=Os02t0159100-00
Chr02	irgsp1_rep	three_prime_UTR	3212238	3212687	.	-	.	Parent=Os02t0159100-00
Chr02	irgsp1_rep	mRNA	3212392	3216605	.	+	.	ID=Os02t0159200-01;Name=Os02t0159200-01;Locus_id=Os02g0159200;Note=Protein of unknown function DUF292%2C eukaryotic domain containing protein.;Transcript_evidence=AK102507 (DDBJ%2C Best hit);ORF_evidence=A2X149 (UniProt);InterPro=Domain of unknown function DUF292%2C eukaryotic (IPR005061);NIAS_FLcDNA=J033095F16;Expression=AK102507;TENOR=Os02t0159200-01;KEGG=Os02t0159200-01
Chr02	irgsp1_rep	five_prime_UTR	3212392	3212647	.	+	.	Parent=Os02t0159200-01
Chr02	irgsp1_rep	CDS	3212648	3212688	.	+	0	Parent=Os02t0159200-01
Chr02	irgsp1_rep	CDS	3213095	3213227	.	+	1	Parent=Os02t0159200-01
Chr02	irgsp1_rep	CDS	3213469	3213572	.	+	0	Parent=Os02t0159200-01
Chr02	irgsp1_rep	CDS	3214362	3214506	.	+	1	Parent=Os02t0159200-01
Chr02	irgsp1_rep	CDS	3214594	3214734	.	+	0	Parent=Os02t0159200-01
Chr02	irgsp1_rep	CDS	3214837	3216300	.	+	0	Parent=Os02t0159200-01
Chr02	irgsp1_rep	three_prime_UTR	3216301	3216605	.	+	.	Parent=Os02t0159200-01
Chr02	irgsp1_rep	mRNA	3215708	3216619	.	+	.	ID=Os02t0159200-02;Name=Os02t0159200-02;Locus_id=Os02g0159200;Note=Hypothetical conserved gene.;Transcript_evidence=AK111948 (DDBJ%2C Best hit);ORF_evidence=A2X149 (UniProt);NIAS_FLcDNA=001-025-G03;Expression=AK111948;TENOR=Os02t0159200-02;KEGG=Os02t0159200-02
Chr02	irgsp1_rep	five_prime_UTR	3215708	3215709	.	+	.	Parent=Os02t0159200-02
Chr02	irgsp1_rep	CDS	3215710	3216300	.	+	0	Parent=Os02t0159200-02
Chr02	irgsp1_rep	three_prime_UTR	3216301	3216619	.	+	.	Parent=Os02t0159200-02
Chr02	irgsp1_rep	mRNA	3217580	3217852	.	-	.	ID=Os02t0159250-00;Name=Os02t0159250-00;Locus_id=Os02g0159250;Note=Hypothetical conserved gene.;Transcript_evidence=EU954422 (DDBJ);ORF_evidence=Q6ETI0 (UniProt);TENOR=Os02t0159250-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	3217812	3217852	.	-	.	Parent=Os02t0159250-00
Chr02	irgsp1_rep	CDS	3217620	3217811	.	-	0	Parent=Os02t0159250-00
Chr02	irgsp1_rep	three_prime_UTR	3217580	3217619	.	-	.	Parent=Os02t0159250-00
Chr02	irgsp1_rep	mRNA	3218987	3219529	.	+	.	ID=Os02t0159300-00;Name=Os02t0159300-00;Locus_id=Os02g0159300;Note=Conserved hypothetical protein.;Transcript_evidence=EU946234 (DDBJ);ORF_evidence=Q6ETH9 (UniProt);TENOR=Os02t0159300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	3218987	3219254	.	+	0	Parent=Os02t0159300-00
Chr02	irgsp1_rep	CDS	3219396	3219529	.	+	2	Parent=Os02t0159300-00
Chr02	irgsp1_rep	mRNA	3220242	3225322	.	-	.	ID=Os02t0159400-01;Name=Os02t0159400-01;Locus_id=Os02g0159400;Note=Conserved hypothetical protein.;Transcript_evidence=AK109550 (DDBJ%2C Best hit);ORF_evidence=B8AI59 (UniProt);NIAS_FLcDNA=002-121-H12;TENOR=Os02t0159400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	3224788	3225322	.	-	.	Parent=Os02t0159400-01
Chr02	irgsp1_rep	CDS	3224419	3224787	.	-	0	Parent=Os02t0159400-01
Chr02	irgsp1_rep	CDS	3224153	3224323	.	-	0	Parent=Os02t0159400-01
Chr02	irgsp1_rep	CDS	3222702	3222849	.	-	0	Parent=Os02t0159400-01
Chr02	irgsp1_rep	CDS	3222475	3222625	.	-	2	Parent=Os02t0159400-01
Chr02	irgsp1_rep	CDS	3222318	3222381	.	-	1	Parent=Os02t0159400-01
Chr02	irgsp1_rep	three_prime_UTR	3222262	3222317	.	-	.	Parent=Os02t0159400-01
Chr02	irgsp1_rep	three_prime_UTR	3222103	3222183	.	-	.	Parent=Os02t0159400-01
Chr02	irgsp1_rep	three_prime_UTR	3221819	3222017	.	-	.	Parent=Os02t0159400-01
Chr02	irgsp1_rep	three_prime_UTR	3221502	3221733	.	-	.	Parent=Os02t0159400-01
Chr02	irgsp1_rep	three_prime_UTR	3221241	3221422	.	-	.	Parent=Os02t0159400-01
Chr02	irgsp1_rep	three_prime_UTR	3220242	3220562	.	-	.	Parent=Os02t0159400-01
Chr02	irgsp1_rep	mRNA	3228969	3233296	.	-	.	ID=Os02t0159700-01;Name=Os02t0159700-01;Locus_id=Os02g0159700;Note=Similar to electron transport SCO1/SenC family protein.;Transcript_evidence=AK073907 (DDBJ%2C Best hit);ORF_evidence=XP_002882593.1 (RefSeq);NIAS_FLcDNA=J033072P22;TENOR=Os02t0159700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	3233113	3233296	.	-	.	Parent=Os02t0159700-01
Chr02	irgsp1_rep	CDS	3233020	3233112	.	-	0	Parent=Os02t0159700-01
Chr02	irgsp1_rep	CDS	3232812	3232922	.	-	0	Parent=Os02t0159700-01
Chr02	irgsp1_rep	CDS	3232521	3232709	.	-	0	Parent=Os02t0159700-01
Chr02	irgsp1_rep	CDS	3232306	3232409	.	-	0	Parent=Os02t0159700-01
Chr02	irgsp1_rep	CDS	3231311	3231311	.	-	1	Parent=Os02t0159700-01
Chr02	irgsp1_rep	three_prime_UTR	3231099	3231310	.	-	.	Parent=Os02t0159700-01
Chr02	irgsp1_rep	three_prime_UTR	3230538	3230627	.	-	.	Parent=Os02t0159700-01
Chr02	irgsp1_rep	three_prime_UTR	3230266	3230398	.	-	.	Parent=Os02t0159700-01
Chr02	irgsp1_rep	three_prime_UTR	3228969	3229367	.	-	.	Parent=Os02t0159700-01
Chr02	irgsp1_rep	mRNA	3232405	3233278	.	-	.	ID=Os02t0159700-02;Name=Os02t0159700-02;Locus_id=Os02g0159700;Note=Hypothetical conserved gene.;Transcript_evidence=AK111055 (DDBJ%2C Best hit);ORF_evidence=Q6ETH6 (UniProt);NIAS_FLcDNA=002-175-C12;Expression=AK111055;TENOR=Os02t0159700-02;KEGG=Os02t0159700-02
Chr02	irgsp1_rep	five_prime_UTR	3233113	3233278	.	-	.	Parent=Os02t0159700-02
Chr02	irgsp1_rep	CDS	3233020	3233112	.	-	0	Parent=Os02t0159700-02
Chr02	irgsp1_rep	CDS	3232812	3232922	.	-	0	Parent=Os02t0159700-02
Chr02	irgsp1_rep	CDS	3232458	3232709	.	-	0	Parent=Os02t0159700-02
Chr02	irgsp1_rep	three_prime_UTR	3232405	3232457	.	-	.	Parent=Os02t0159700-02
Chr02	irgsp1_rep	mRNA	3227570	3229291	.	-	.	ID=Os02t0159700-03;Name=Os02t0159700-03;Locus_id=Os02g0159700;Note=Hypothetical gene.;Transcript_evidence=AK105848 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-203-G06;Expression=AK105848;TENOR=Os02t0159700-03;KEGG=Os02t0159700-03
Chr02	irgsp1_rep	five_prime_UTR	3228131	3229291	.	-	.	Parent=Os02t0159700-03
Chr02	irgsp1_rep	CDS	3227603	3228130	.	-	0	Parent=Os02t0159700-03
Chr02	irgsp1_rep	three_prime_UTR	3227570	3227602	.	-	.	Parent=Os02t0159700-03
Chr02	irgsp1_rep	mRNA	3227681	3229224	.	+	.	ID=Os02t0159800-01;Name=Os02t0159800-01;Locus_id=Os02g0159800;Oryzabase Gene Symbol Synonym(s)=OsFbox067%2C OsFbox67%2C Os_F0477;Oryzabase Gene Name Synonym(s)=F-box protein 67%2C SCO1 protein;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK119764 (DDBJ%2C Best hit);ORF_evidence=A2X153 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174);NIAS_FLcDNA=002-171-H06;Oryzabase=16864;Expression=AK119764;TENOR=Os02t0159800-01;KEGG=Os02t0159800-01
Chr02	irgsp1_rep	five_prime_UTR	3227681	3227722	.	+	.	Parent=Os02t0159800-01
Chr02	irgsp1_rep	CDS	3227723	3228970	.	+	0	Parent=Os02t0159800-01
Chr02	irgsp1_rep	three_prime_UTR	3228971	3229224	.	+	.	Parent=Os02t0159800-01
Chr02	irgsp1_rep	mRNA	3233676	3233934	.	-	.	ID=Os02t0159850-00;Name=Os02t0159850-00;Locus_id=Os02g0159850;Note=Similar to predicted protein.;Transcript_evidence=EU941089 (DDBJ);ORF_evidence=XP_002327722.1 (RefSeq);TENOR=Os02t0159850-00;KEGG=Os02t0159850-00
Chr02	irgsp1_rep	five_prime_UTR	3233877	3233934	.	-	.	Parent=Os02t0159850-00
Chr02	irgsp1_rep	CDS	3233691	3233876	.	-	0	Parent=Os02t0159850-00
Chr02	irgsp1_rep	three_prime_UTR	3233676	3233690	.	-	.	Parent=Os02t0159850-00
Chr02	irgsp1_rep	mRNA	3234312	3237645	.	+	.	ID=Os02t0159900-01;Name=Os02t0159900-01;Locus_id=Os02g0159900;Note=SKD1 protein (Vacuolar sorting protein 4b).;Transcript_evidence=AK241074 (DDBJ%2C Best hit);ORF_evidence=B6T3Y2 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960),MIT (IPR007330),Vps4 oligomerisation%2C C-terminal (IPR015415);NIAS_FLcDNA=J065068E03;TENOR=Os02t0159900-01;KEGG=Os02t0159900-01
Chr02	irgsp1_rep	five_prime_UTR	3234312	3234379	.	+	.	Parent=Os02t0159900-01
Chr02	irgsp1_rep	CDS	3234380	3234836	.	+	0	Parent=Os02t0159900-01
Chr02	irgsp1_rep	CDS	3235120	3235225	.	+	2	Parent=Os02t0159900-01
Chr02	irgsp1_rep	CDS	3235724	3235922	.	+	1	Parent=Os02t0159900-01
Chr02	irgsp1_rep	CDS	3236121	3236189	.	+	0	Parent=Os02t0159900-01
Chr02	irgsp1_rep	CDS	3236301	3236375	.	+	0	Parent=Os02t0159900-01
Chr02	irgsp1_rep	CDS	3236486	3236584	.	+	0	Parent=Os02t0159900-01
Chr02	irgsp1_rep	CDS	3236696	3236866	.	+	0	Parent=Os02t0159900-01
Chr02	irgsp1_rep	CDS	3237396	3237521	.	+	0	Parent=Os02t0159900-01
Chr02	irgsp1_rep	three_prime_UTR	3237522	3237645	.	+	.	Parent=Os02t0159900-01
Chr02	irgsp1_rep	mRNA	3234460	3236867	.	-	.	ID=Os02t0159950-00;Name=Os02t0159950-00;Locus_id=Os02g0159950;Note=Hypothetical gene.;Transcript_evidence=BT016886 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0159950-00;KEGG=Os02t0159950-00
Chr02	irgsp1_rep	five_prime_UTR	3236676	3236867	.	-	.	Parent=Os02t0159950-00
Chr02	irgsp1_rep	five_prime_UTR	3236462	3236565	.	-	.	Parent=Os02t0159950-00
Chr02	irgsp1_rep	five_prime_UTR	3236297	3236355	.	-	.	Parent=Os02t0159950-00
Chr02	irgsp1_rep	five_prime_UTR	3236176	3236185	.	-	.	Parent=Os02t0159950-00
Chr02	irgsp1_rep	CDS	3236131	3236175	.	-	0	Parent=Os02t0159950-00
Chr02	irgsp1_rep	CDS	3235719	3235930	.	-	0	Parent=Os02t0159950-00
Chr02	irgsp1_rep	CDS	3235108	3235219	.	-	1	Parent=Os02t0159950-00
Chr02	irgsp1_rep	CDS	3234562	3234828	.	-	0	Parent=Os02t0159950-00
Chr02	irgsp1_rep	three_prime_UTR	3234460	3234561	.	-	.	Parent=Os02t0159950-00
Chr02	irgsp1_rep	mRNA	3237586	3237983	.	-	.	ID=Os02t0160000-01;Name=Os02t0160000-01;Locus_id=Os02g0160000;Note=Similar to Kluyveromyces lactis strain NRRL Y-1140 Chromosome B of strain NRRL Y- 1140 of Kluyveromyces lactis.;Transcript_evidence=AK062904 (DDBJ%2C Best hit);ORF_evidence=NP_190280.5 (RefSeq);GO=Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides (GO:0016818);InterPro=DSH%2C C-terminal (IPR012961);NIAS_FLcDNA=001-108-F08;Expression=AK062904;TENOR=Os02t0160000-01;KEGG=Os02t0160000-01 (EC:3.6.1.-)
Chr02	irgsp1_rep	five_prime_UTR	3237983	3237983	.	-	.	Parent=Os02t0160000-01
Chr02	irgsp1_rep	CDS	3237851	3237982	.	-	0	Parent=Os02t0160000-01
Chr02	irgsp1_rep	three_prime_UTR	3237586	3237850	.	-	.	Parent=Os02t0160000-01
Chr02	irgsp1_rep	mRNA	3254925	3256897	.	+	.	ID=Os02t0160200-01;Name=Os02t0160200-01;Locus_id=Os02g0160200;Oryzabase Gene Symbol Synonym(s)=OsFbox068%2C OsFbox68%2C Os_F0346;Oryzabase Gene Name Synonym(s)=F-box protein 68;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK109618 (DDBJ%2C Best hit);ORF_evidence=A2X161 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),FBD-like (IPR006566),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-137-H06;Oryzabase=16865;Expression=AK109618;TENOR=Os02t0160200-01;KEGG=Os02t0160200-01
Chr02	irgsp1_rep	five_prime_UTR	3254925	3255107	.	+	.	Parent=Os02t0160200-01
Chr02	irgsp1_rep	CDS	3255108	3256064	.	+	0	Parent=Os02t0160200-01
Chr02	irgsp1_rep	CDS	3256142	3256303	.	+	0	Parent=Os02t0160200-01
Chr02	irgsp1_rep	CDS	3256396	3256764	.	+	0	Parent=Os02t0160200-01
Chr02	irgsp1_rep	three_prime_UTR	3256765	3256897	.	+	.	Parent=Os02t0160200-01
Chr02	irgsp1_rep	mRNA	3263401	3265393	.	+	.	ID=Os02t0160250-00;Name=Os02t0160250-00;Locus_id=Os02g0160250;Note=Hypothetical conserved gene.;Transcript_evidence=EU968953 (DDBJ);ORF_evidence=Q6H7U7 (UniProt);GO=Biological Process: ATP hydrolysis coupled proton transport (GO:0015991),Cellular Component: vacuolar proton-transporting V-type ATPase%2C V1 domain (GO:0000221),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515),Molecular Function: proton-transporting ATPase activity%2C rotational mechanism (GO:0046961);InterPro=Armadillo (IPR000225),ATPase%2C V1 complex%2C subunit H (IPR004908),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);TENOR=Os02t0160250-00;KEGG=Os02t0160250-00
Chr02	irgsp1_rep	CDS	3263401	3265377	.	+	0	Parent=Os02t0160250-00
Chr02	irgsp1_rep	three_prime_UTR	3265378	3265393	.	+	.	Parent=Os02t0160250-00
Chr02	irgsp1_rep	mRNA	3265700	3268325	.	-	.	ID=Os02t0160300-01;Name=Os02t0160300-01;Locus_id=Os02g0160300;Note=Hypothetical protein.;Transcript_evidence=AK120181 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013033N02;Expression=AK120181;TENOR=Os02t0160300-01;KEGG=Os02t0160300-01
Chr02	irgsp1_rep	five_prime_UTR	3267896	3268325	.	-	.	Parent=Os02t0160300-01
Chr02	irgsp1_rep	five_prime_UTR	3267540	3267754	.	-	.	Parent=Os02t0160300-01
Chr02	irgsp1_rep	CDS	3267171	3267539	.	-	0	Parent=Os02t0160300-01
Chr02	irgsp1_rep	CDS	3265913	3266086	.	-	0	Parent=Os02t0160300-01
Chr02	irgsp1_rep	three_prime_UTR	3265700	3265912	.	-	.	Parent=Os02t0160300-01
Chr02	irgsp1_rep	mRNA	3266011	3268700	.	+	.	ID=Os02t0160400-01;Name=Os02t0160400-01;Locus_id=Os02g0160400;Note=Similar to Monosaccharide transporter 3.;Transcript_evidence=AK070615 (DDBJ%2C Best hit),AK119771 (DDBJ%2C Best hit);ORF_evidence=NP_001105681.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J023063D11,002-172-F02;TENOR=Os02t0160400-01
Chr02	irgsp1_rep	five_prime_UTR	3266011	3266124	.	+	.	Parent=Os02t0160400-01
Chr02	irgsp1_rep	CDS	3266125	3266260	.	+	0	Parent=Os02t0160400-01
Chr02	irgsp1_rep	CDS	3266350	3266672	.	+	2	Parent=Os02t0160400-01
Chr02	irgsp1_rep	CDS	3267085	3267714	.	+	0	Parent=Os02t0160400-01
Chr02	irgsp1_rep	CDS	3267865	3268338	.	+	0	Parent=Os02t0160400-01
Chr02	irgsp1_rep	three_prime_UTR	3268339	3268700	.	+	.	Parent=Os02t0160400-01
Chr02	irgsp1_rep	mRNA	3271379	3272038	.	-	.	ID=Os02t0160500-01;Name=Os02t0160500-01;Locus_id=Os02g0160500;Note=Hypothetical conserved gene.;Transcript_evidence=AK067196 (DDBJ%2C Best hit);ORF_evidence=B8AI63 (UniProt);NIAS_FLcDNA=J013097F16;Expression=AK067196;TENOR=Os02t0160500-01;KEGG=Os02t0160500-01
Chr02	irgsp1_rep	five_prime_UTR	3271966	3272038	.	-	.	Parent=Os02t0160500-01
Chr02	irgsp1_rep	CDS	3271768	3271965	.	-	0	Parent=Os02t0160500-01
Chr02	irgsp1_rep	three_prime_UTR	3271379	3271767	.	-	.	Parent=Os02t0160500-01
Chr02	irgsp1_rep	mRNA	3279375	3280952	.	-	.	ID=Os02t0160800-01;Name=Os02t0160800-01;Locus_id=Os02g0160800;Note=Hypothetical protein.;Transcript_evidence=AK109752 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-146-F10;Expression=AK109752;TENOR=Os02t0160800-01;KEGG=Os02t0160800-01
Chr02	irgsp1_rep	five_prime_UTR	3279743	3280952	.	-	.	Parent=Os02t0160800-01
Chr02	irgsp1_rep	CDS	3279416	3279742	.	-	0	Parent=Os02t0160800-01
Chr02	irgsp1_rep	three_prime_UTR	3279375	3279415	.	-	.	Parent=Os02t0160800-01
Chr02	irgsp1_rep	mRNA	3279594	3280500	.	+	.	ID=Os02t0160900-01;Name=Os02t0160900-01;Locus_id=Os02g0160900;Note=Protein of unknown function wound-induced domain containing protein.;Transcript_evidence=AK287510 (DDBJ%2C Best hit);ORF_evidence=NP_001172811.1 (RefSeq);InterPro=Protein of unknown function wound-induced (IPR022251);NIAS_FLcDNA=J053025M08;TENOR=Os02t0160900-01;KEGG=Os02t0160900-01
Chr02	irgsp1_rep	five_prime_UTR	3279594	3279686	.	+	.	Parent=Os02t0160900-01
Chr02	irgsp1_rep	CDS	3279687	3279953	.	+	0	Parent=Os02t0160900-01
Chr02	irgsp1_rep	three_prime_UTR	3279954	3280500	.	+	.	Parent=Os02t0160900-01
Chr02	irgsp1_rep	mRNA	3283264	3286366	.	-	.	ID=Os02t0161000-01;Name=Os02t0161000-01;Locus_id=Os02g0161000;CGSNL Gene Symbol=CIPK26;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 26;Oryzabase Gene Symbol Synonym(s)=OsCIPK26;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 26;Note=Similar to Serine/threonine protein kinase-like protein.;Transcript_evidence=AK111660 (DDBJ%2C Best hit);ORF_evidence=Q6H7U5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),NAF domain (IPR004041),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),NAF/FISL domain (IPR018451),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013151G22;Oryzabase=7414;Expression=AK111660;TENOR=Os02t0161000-01;KEGG=Os02t0161000-01 (EC:2.7.11.11)
Chr02	irgsp1_rep	five_prime_UTR	3286268	3286366	.	-	.	Parent=Os02t0161000-01
Chr02	irgsp1_rep	five_prime_UTR	3285243	3285532	.	-	.	Parent=Os02t0161000-01
Chr02	irgsp1_rep	CDS	3283761	3285242	.	-	0	Parent=Os02t0161000-01
Chr02	irgsp1_rep	three_prime_UTR	3283264	3283760	.	-	.	Parent=Os02t0161000-01
Chr02	irgsp1_rep	mRNA	3284875	3288054	.	+	.	ID=Os02t0161050-01;Name=Os02t0161050-01;Locus_id=Os02g0161050;Note=Hypothetical gene.;Transcript_evidence=AK288221 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090011P19;TENOR=Os02t0161050-01;KEGG=Os02t0161050-01
Chr02	irgsp1_rep	five_prime_UTR	3284875	3286484	.	+	.	Parent=Os02t0161050-01
Chr02	irgsp1_rep	CDS	3286485	3286697	.	+	0	Parent=Os02t0161050-01
Chr02	irgsp1_rep	three_prime_UTR	3286698	3288054	.	+	.	Parent=Os02t0161050-01
Chr02	irgsp1_rep	mRNA	3291235	3295426	.	+	.	ID=Os02t0161100-01;Name=Os02t0161100-01;Locus_id=Os02g0161100;Oryzabase Gene Symbol Synonym(s)=OsFH10%2C FH10;Oryzabase Gene Name Synonym(s)=formin homology 10%2C forming family protein 10%2C FH2 protein 10%2C FH2 domain protein 10;Note=Actin-binding FH2 domain containing protein.;Transcript_evidence=AK072377 (DDBJ%2C Best hit);ORF_evidence=Q6H7U3 (UniProt);GO=Biological Process: cellular component organization (GO:0016043),Biological Process: actin cytoskeleton organization (GO:0030036),Molecular Function: actin binding (GO:0003779);InterPro=Actin-binding FH2/DRF autoregulatory (IPR003104),Actin-binding FH2 (IPR015425);NIAS_FLcDNA=J023067F04;Oryzabase=21781;Expression=AK072377;TENOR=Os02t0161100-01;KEGG=Os02t0161100-01
Chr02	irgsp1_rep	five_prime_UTR	3291235	3291564	.	+	.	Parent=Os02t0161100-01
Chr02	irgsp1_rep	CDS	3291565	3291735	.	+	0	Parent=Os02t0161100-01
Chr02	irgsp1_rep	CDS	3292084	3292771	.	+	0	Parent=Os02t0161100-01
Chr02	irgsp1_rep	CDS	3292849	3293365	.	+	2	Parent=Os02t0161100-01
Chr02	irgsp1_rep	CDS	3293440	3293639	.	+	1	Parent=Os02t0161100-01
Chr02	irgsp1_rep	CDS	3294139	3294374	.	+	2	Parent=Os02t0161100-01
Chr02	irgsp1_rep	CDS	3294471	3295304	.	+	0	Parent=Os02t0161100-01
Chr02	irgsp1_rep	three_prime_UTR	3295305	3295426	.	+	.	Parent=Os02t0161100-01
Chr02	irgsp1_rep	mRNA	3297230	3303782	.	+	.	ID=Os02t0161200-01;Name=Os02t0161200-01;Locus_id=Os02g0161200;CGSNL Gene Symbol=C3H13;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 13;Oryzabase Gene Symbol Synonym(s)=OsC3H13%2C BIP105%2C DLN42%2C DLN42a%2C DLN42b%2C OsDLN42%2C OsDLN42a%2C OsDLN42b;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 13%2C BRI1-kinase domain-interacting protein 105%2C brassinosteroid receptor kinase (BRI1)-interacting protein 105%2C BRI1-interacting protein 105%2C brassinosteroid receptor kinase-interacting protein 105%2C DLN repressor 42%2C DLN motif protein 42;Note=Zinc finger%2C CCCH-type domain containing protein.;Transcript_evidence=AK065198 (DDBJ%2C Best hit),AK122103 (DDBJ%2C Best hit);ORF_evidence=B6TAM4 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=J013002E19,J033125O22;Oryzabase=8576;Expression=AK065198;TENOR=Os02t0161200-01;KEGG=Os02t0161200-01
Chr02	irgsp1_rep	five_prime_UTR	3297230	3297335	.	+	.	Parent=Os02t0161200-01
Chr02	irgsp1_rep	CDS	3297336	3297492	.	+	0	Parent=Os02t0161200-01
Chr02	irgsp1_rep	CDS	3298902	3299039	.	+	2	Parent=Os02t0161200-01
Chr02	irgsp1_rep	CDS	3299176	3299209	.	+	2	Parent=Os02t0161200-01
Chr02	irgsp1_rep	CDS	3299816	3299951	.	+	1	Parent=Os02t0161200-01
Chr02	irgsp1_rep	CDS	3300036	3300092	.	+	0	Parent=Os02t0161200-01
Chr02	irgsp1_rep	CDS	3301691	3301788	.	+	0	Parent=Os02t0161200-01
Chr02	irgsp1_rep	CDS	3301878	3301949	.	+	1	Parent=Os02t0161200-01
Chr02	irgsp1_rep	CDS	3302058	3302230	.	+	1	Parent=Os02t0161200-01
Chr02	irgsp1_rep	CDS	3302554	3302732	.	+	2	Parent=Os02t0161200-01
Chr02	irgsp1_rep	CDS	3303138	3303338	.	+	0	Parent=Os02t0161200-01
Chr02	irgsp1_rep	CDS	3303526	3303561	.	+	0	Parent=Os02t0161200-01
Chr02	irgsp1_rep	three_prime_UTR	3303562	3303782	.	+	.	Parent=Os02t0161200-01
Chr02	irgsp1_rep	mRNA	3301680	3306366	.	-	.	ID=Os02t0161251-01;Name=Os02t0161251-01;Locus_id=Os02g0161251;Note=Hypothetical gene.;Transcript_evidence=AK288500 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090041C18;TENOR=Os02t0161251-01;KEGG=Os02t0161251-01
Chr02	irgsp1_rep	five_prime_UTR	3304863	3306366	.	-	.	Parent=Os02t0161251-01
Chr02	irgsp1_rep	CDS	3304434	3304862	.	-	0	Parent=Os02t0161251-01
Chr02	irgsp1_rep	three_prime_UTR	3301680	3304433	.	-	.	Parent=Os02t0161251-01
Chr02	irgsp1_rep	mRNA	3311245	3313190	.	+	.	ID=Os02t0161300-01;Name=Os02t0161300-01;Locus_id=Os02g0161300;Note=Similar to Mot1 (Fragment).;Transcript_evidence=AK070938 (DDBJ%2C Best hit);ORF_evidence=C6ERB4 (UniProt);InterPro=Domain of unknown function DUF3535 (IPR022707);NIAS_FLcDNA=J023066D07;Expression=AK070938;TENOR=Os02t0161300-01;KEGG=Os02t0161300-01
Chr02	irgsp1_rep	CDS	3311245	3311388	.	+	0	Parent=Os02t0161300-01
Chr02	irgsp1_rep	CDS	3311503	3311928	.	+	0	Parent=Os02t0161300-01
Chr02	irgsp1_rep	CDS	3312012	3312449	.	+	0	Parent=Os02t0161300-01
Chr02	irgsp1_rep	CDS	3312595	3312714	.	+	0	Parent=Os02t0161300-01
Chr02	irgsp1_rep	CDS	3312786	3313190	.	+	0	Parent=Os02t0161300-01
Chr02	irgsp1_rep	mRNA	3318065	3318354	.	+	.	ID=Os02t0161400-01;Name=Os02t0161400-01;Locus_id=Os02g0161400;CGSNL Gene Symbol=DLN43;CGSNL Gene Name=DLN REPRESSOR 43;Oryzabase Gene Symbol Synonym(s)=OsDLN43;Oryzabase Gene Name Synonym(s)=DLN repressor 43%2C DLN motif protein 43;Note=Non-protein coding transcript.;Transcript_evidence=AK058838 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-004-D06;Oryzabase=23164;TENOR=Os02t0161400-01
Chr02	irgsp1_rep	exon	3318065	3318354	.	+	.	Parent=Os02t0161400-01
Chr02	irgsp1_rep	mRNA	3325040	3326725	.	+	.	ID=Os02t0161500-00;Name=Os02t0161500-00;Locus_id=Os02g0161500;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=BT069190 (DDBJ);ORF_evidence=B9F357 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591);TENOR=Os02t0161500-00
Chr02	irgsp1_rep	CDS	3325040	3326725	.	+	0	Parent=Os02t0161500-00
Chr02	irgsp1_rep	mRNA	3327802	3328574	.	+	.	ID=Os02t0161601-00;Name=Os02t0161601-00;Locus_id=Os02g0161601;Note=Hypothetical gene.;Transcript_evidence=CT835502 (DDBJ%2C Best hit);ORF_evidence=GeneMark;TENOR=Os02t0161601-00
Chr02	irgsp1_rep	five_prime_UTR	3327802	3327816	.	+	.	Parent=Os02t0161601-00
Chr02	irgsp1_rep	CDS	3327817	3328152	.	+	0	Parent=Os02t0161601-00
Chr02	irgsp1_rep	three_prime_UTR	3328153	3328574	.	+	.	Parent=Os02t0161601-00
Chr02	irgsp1_rep	mRNA	3336154	3339094	.	-	.	ID=Os02t0161800-01;Name=Os02t0161800-01;Locus_id=Os02g0161800;Oryzabase Gene Symbol Synonym(s)=prx24;Oryzabase Gene Name Synonym(s)=class III peroxidase 24;Note=Similar to Peroxidase precursor (EC 1.11.1.7).;Transcript_evidence=AK105544 (DDBJ%2C Best hit);ORF_evidence=Q5U1R9 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793);NIAS_FLcDNA=001-128-A02;Oryzabase=14551;Expression=AK105544;TENOR=Os02t0161800-01;KEGG=Os02t0161800-01 (EC:1.11.1.7)
Chr02	irgsp1_rep	five_prime_UTR	3339048	3339094	.	-	.	Parent=Os02t0161800-01
Chr02	irgsp1_rep	CDS	3338796	3339047	.	-	0	Parent=Os02t0161800-01
Chr02	irgsp1_rep	CDS	3338507	3338701	.	-	0	Parent=Os02t0161800-01
Chr02	irgsp1_rep	CDS	3338263	3338425	.	-	0	Parent=Os02t0161800-01
Chr02	irgsp1_rep	CDS	3336487	3336923	.	-	2	Parent=Os02t0161800-01
Chr02	irgsp1_rep	three_prime_UTR	3336154	3336486	.	-	.	Parent=Os02t0161800-01
Chr02	irgsp1_rep	mRNA	3340458	3343060	.	-	.	ID=Os02t0161900-01;Name=Os02t0161900-01;Locus_id=Os02g0161900;CGSNL Gene Symbol=RUBQ2;CGSNL Gene Name=RICE UBIQUITIN2;Oryzabase Gene Symbol Synonym(s)=rubq2%2C rub1%2C Ubq1%2C Rubq1%2C UBQ10;Oryzabase Gene Name Synonym(s)=rice ubiquitin2%2C ubiquitin 2%2C ubiquitin2%2C Ubiquitin 10;Note=Similar to polyubiquitin containing 7 ubiquitin monomers.;Transcript_evidence=AK101547 (DDBJ%2C Best hit),AK061956 (DDBJ%2C Best hit);ORF_evidence=NP_001147027.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin (IPR000626),Ubiquitin conserved site (IPR019954),Ubiquitin supergroup (IPR019955),Ubiquitin subgroup (IPR019956);NIAS_FLcDNA=J033048M20,001-042-F08;Oryzabase=6416;Expression=AK101547;TENOR=Os02t0161900-01;KEGG=Os02t0161900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	3342980	3343060	.	-	0	Parent=Os02t0161900-01
Chr02	irgsp1_rep	CDS	3340644	3342017	.	-	0	Parent=Os02t0161900-01
Chr02	irgsp1_rep	three_prime_UTR	3340458	3340643	.	-	.	Parent=Os02t0161900-01
Chr02	irgsp1_rep	mRNA	3344959	3347407	.	-	.	ID=Os02t0162000-01;Name=Os02t0162000-01;Locus_id=Os02g0162000;Note=CytoChrome c oxidase%2C subunit VIIa domain containing protein.;Transcript_evidence=AK122146 (DDBJ%2C Best hit);ORF_evidence=B6T2C0 (UniProt);GO=Cellular Component: mitochondrial respiratory chain (GO:0005746),Molecular Function: cytoChrome-c oxidase activity (GO:0004129),Molecular Function: electron carrier activity (GO:0009055);InterPro=CytoChrome c oxidase%2C subunit VIIa (IPR003177);NIAS_FLcDNA=J033138B10;Expression=AK122146;TENOR=Os02t0162000-01;KEGG=Os02t0162000-01
Chr02	irgsp1_rep	five_prime_UTR	3347274	3347407	.	-	.	Parent=Os02t0162000-01
Chr02	irgsp1_rep	five_prime_UTR	3345453	3345453	.	-	.	Parent=Os02t0162000-01
Chr02	irgsp1_rep	CDS	3345297	3345452	.	-	0	Parent=Os02t0162000-01
Chr02	irgsp1_rep	CDS	3345153	3345200	.	-	0	Parent=Os02t0162000-01
Chr02	irgsp1_rep	three_prime_UTR	3344959	3345152	.	-	.	Parent=Os02t0162000-01
Chr02	irgsp1_rep	mRNA	3344787	3347324	.	-	.	ID=Os02t0162000-02;Name=Os02t0162000-02;Locus_id=Os02g0162000;Note=CytoChrome c oxidase%2C subunit VIIa domain containing protein.;Transcript_evidence=AK063787 (DDBJ%2C Best hit);ORF_evidence=B6T2C0 (UniProt);GO=Cellular Component: mitochondrial respiratory chain (GO:0005746),Molecular Function: cytoChrome-c oxidase activity (GO:0004129),Molecular Function: electron carrier activity (GO:0009055);InterPro=CytoChrome c oxidase%2C subunit VIIa (IPR003177);NIAS_FLcDNA=001-121-E01;Expression=AK063787;TENOR=Os02t0162000-02;KEGG=Os02t0162000-02
Chr02	irgsp1_rep	five_prime_UTR	3347274	3347324	.	-	.	Parent=Os02t0162000-02
Chr02	irgsp1_rep	five_prime_UTR	3345453	3345453	.	-	.	Parent=Os02t0162000-02
Chr02	irgsp1_rep	CDS	3345297	3345452	.	-	0	Parent=Os02t0162000-02
Chr02	irgsp1_rep	CDS	3345153	3345200	.	-	0	Parent=Os02t0162000-02
Chr02	irgsp1_rep	three_prime_UTR	3344787	3345152	.	-	.	Parent=Os02t0162000-02
Chr02	irgsp1_rep	mRNA	3345017	3345473	.	+	.	ID=Os02t0162050-00;Name=Os02t0162050-00;Locus_id=Os02g0162050;Note=Non-protein coding transcript.;Transcript_evidence=BT016940 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0162050-00
Chr02	irgsp1_rep	exon	3345017	3345185	.	+	.	Parent=Os02t0162050-00
Chr02	irgsp1_rep	exon	3345283	3345473	.	+	.	Parent=Os02t0162050-00
Chr02	irgsp1_rep	mRNA	3352116	3353370	.	-	.	ID=Os02t0162150-00;Name=Os02t0162150-00;Locus_id=Os02g0162150;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os02t0162150-00
Chr02	irgsp1_rep	CDS	3353287	3353370	.	-	0	Parent=Os02t0162150-00
Chr02	irgsp1_rep	CDS	3352116	3352352	.	-	0	Parent=Os02t0162150-00
Chr02	irgsp1_rep	mRNA	3353590	3358320	.	+	.	ID=Os02t0162200-00;Name=Os02t0162200-00;Locus_id=Os02g0162200;CGSNL Gene Symbol=ENODL6;CGSNL Gene Name=EARLY NODULIN LIKE PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsENODL6%2C OsELA2%2C ELA2%2C OsEnS-24;Oryzabase Gene Name Synonym(s)=early nodulin-like protein 6%2C early nodulin-like arabinogalactan protein 2%2C endosperm-specific gene 24%2C eNod-like AGP 2;Note=Similar to Early salt stress and cold acclimation-induced protein 2-3.;Transcript_evidence=FP094475 (DDBJ);ORF_evidence=Q4KXE1 (UniProt);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);Oryzabase=9731;TENOR=Os02t0162200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	3353590	3353663	.	+	.	Parent=Os02t0162200-00
Chr02	irgsp1_rep	CDS	3353664	3353850	.	+	0	Parent=Os02t0162200-00
Chr02	irgsp1_rep	CDS	3354224	3354765	.	+	2	Parent=Os02t0162200-00
Chr02	irgsp1_rep	CDS	3357985	3358122	.	+	0	Parent=Os02t0162200-00
Chr02	irgsp1_rep	three_prime_UTR	3358123	3358320	.	+	.	Parent=Os02t0162200-00
Chr02	irgsp1_rep	mRNA	3358928	3360718	.	-	.	ID=Os02t0162500-01;Name=Os02t0162500-01;Locus_id=Os02g0162500;Note=Similar to 40S ribosomal protein S14.;Transcript_evidence=AK121223 (DDBJ%2C Best hit),AK058907 (DDBJ%2C Best hit);ORF_evidence=Q01IS6 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S11 (IPR001971),Ribosomal S11%2C conserved site (IPR018102);NIAS_FLcDNA=J023090I10,001-008-D11;TENOR=Os02t0162500-01
Chr02	irgsp1_rep	five_prime_UTR	3360627	3360718	.	-	.	Parent=Os02t0162500-01
Chr02	irgsp1_rep	CDS	3360624	3360626	.	-	0	Parent=Os02t0162500-01
Chr02	irgsp1_rep	CDS	3359899	3360018	.	-	0	Parent=Os02t0162500-01
Chr02	irgsp1_rep	CDS	3359768	3359813	.	-	0	Parent=Os02t0162500-01
Chr02	irgsp1_rep	CDS	3359597	3359682	.	-	2	Parent=Os02t0162500-01
Chr02	irgsp1_rep	CDS	3359373	3359502	.	-	0	Parent=Os02t0162500-01
Chr02	irgsp1_rep	CDS	3359158	3359225	.	-	2	Parent=Os02t0162500-01
Chr02	irgsp1_rep	three_prime_UTR	3358928	3359157	.	-	.	Parent=Os02t0162500-01
Chr02	irgsp1_rep	mRNA	3362047	3362944	.	+	.	ID=Os02t0162600-01;Name=Os02t0162600-01;Locus_id=Os02g0162600;Note=Conserved hypothetical protein.;Transcript_evidence=AK242133 (DDBJ%2C Best hit);ORF_evidence=NP_001045983.1 (RefSeq);NIAS_FLcDNA=J075149F15;TENOR=Os02t0162600-01;KEGG=Os02t0162600-01
Chr02	irgsp1_rep	five_prime_UTR	3362047	3362147	.	+	.	Parent=Os02t0162600-01
Chr02	irgsp1_rep	CDS	3362148	3362588	.	+	0	Parent=Os02t0162600-01
Chr02	irgsp1_rep	three_prime_UTR	3362589	3362944	.	+	.	Parent=Os02t0162600-01
Chr02	irgsp1_rep	mRNA	3362834	3364270	.	-	.	ID=Os02t0162700-01;Name=Os02t0162700-01;Locus_id=Os02g0162700;Oryzabase Gene Symbol Synonym(s)=OsWD40-37;Note=Non-protein coding transcript.;Transcript_evidence=AK058629 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-018-C06;Oryzabase=10718;TENOR=Os02t0162700-01
Chr02	irgsp1_rep	exon	3364160	3364270	.	-	.	Parent=Os02t0162700-01
Chr02	irgsp1_rep	exon	3363361	3363486	.	-	.	Parent=Os02t0162700-01
Chr02	irgsp1_rep	exon	3362834	3363256	.	-	.	Parent=Os02t0162700-01
Chr02	irgsp1_rep	mRNA	3366176	3367813	.	-	.	ID=Os02t0162733-00;Name=Os02t0162733-00;Locus_id=Os02g0162733;Note=Similar to WD-40 repeat family protein / beige-related.;Transcript_evidence=EU954809 (DDBJ);ORF_evidence=NP_564728.2 (RefSeq);InterPro=BEACH domain (IPR000409);TENOR=Os02t0162733-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	3367705	3367813	.	-	.	Parent=Os02t0162733-00
Chr02	irgsp1_rep	CDS	3367688	3367704	.	-	0	Parent=Os02t0162733-00
Chr02	irgsp1_rep	CDS	3367577	3367609	.	-	1	Parent=Os02t0162733-00
Chr02	irgsp1_rep	CDS	3367401	3367494	.	-	1	Parent=Os02t0162733-00
Chr02	irgsp1_rep	CDS	3367058	3367264	.	-	0	Parent=Os02t0162733-00
Chr02	irgsp1_rep	CDS	3366176	3366451	.	-	0	Parent=Os02t0162733-00
Chr02	irgsp1_rep	mRNA	3378928	3386412	.	-	.	ID=Os02t0162766-01;Name=Os02t0162766-01;Locus_id=Os02g0162766;Note=Hypothetical conserved gene.;Transcript_evidence=AK287921 (DDBJ%2C Best hit);ORF_evidence=B9F362 (UniProt);NIAS_FLcDNA=J065217J02;TENOR=Os02t0162766-01;KEGG=Os02t0162766-01
Chr02	irgsp1_rep	five_prime_UTR	3386207	3386412	.	-	.	Parent=Os02t0162766-01
Chr02	irgsp1_rep	CDS	3386016	3386206	.	-	0	Parent=Os02t0162766-01
Chr02	irgsp1_rep	CDS	3385364	3385427	.	-	1	Parent=Os02t0162766-01
Chr02	irgsp1_rep	CDS	3384701	3384905	.	-	0	Parent=Os02t0162766-01
Chr02	irgsp1_rep	CDS	3384035	3384208	.	-	2	Parent=Os02t0162766-01
Chr02	irgsp1_rep	CDS	3383540	3383854	.	-	2	Parent=Os02t0162766-01
Chr02	irgsp1_rep	CDS	3381477	3381699	.	-	2	Parent=Os02t0162766-01
Chr02	irgsp1_rep	CDS	3381314	3381367	.	-	1	Parent=Os02t0162766-01
Chr02	irgsp1_rep	CDS	3380404	3380841	.	-	1	Parent=Os02t0162766-01
Chr02	irgsp1_rep	CDS	3379653	3379968	.	-	1	Parent=Os02t0162766-01
Chr02	irgsp1_rep	CDS	3379521	3379538	.	-	0	Parent=Os02t0162766-01
Chr02	irgsp1_rep	three_prime_UTR	3379090	3379520	.	-	.	Parent=Os02t0162766-01
Chr02	irgsp1_rep	three_prime_UTR	3378928	3379004	.	-	.	Parent=Os02t0162766-01
Chr02	irgsp1_rep	mRNA	3384035	3384907	.	+	.	ID=Os02t0162783-00;Name=Os02t0162783-00;Locus_id=Os02g0162783;Note=Non-protein coding transcript.;Transcript_evidence=EU943604 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0162783-00
Chr02	irgsp1_rep	exon	3384035	3384179	.	+	.	Parent=Os02t0162783-00
Chr02	irgsp1_rep	exon	3384672	3384907	.	+	.	Parent=Os02t0162783-00
Chr02	irgsp1_rep	mRNA	3408036	3409023	.	+	.	ID=Os02t0163300-01;Name=Os02t0163300-01;Locus_id=Os02g0163300;Note=Conserved hypothetical protein.;Transcript_evidence=AK064737 (DDBJ%2C Best hit);ORF_evidence=B9F366 (UniProt);NIAS_FLcDNA=002-120-C11;Expression=AK064737;TENOR=Os02t0163300-01;KEGG=Os02t0163300-01
Chr02	irgsp1_rep	five_prime_UTR	3408036	3408074	.	+	.	Parent=Os02t0163300-01
Chr02	irgsp1_rep	CDS	3408075	3408233	.	+	0	Parent=Os02t0163300-01
Chr02	irgsp1_rep	CDS	3408360	3408629	.	+	0	Parent=Os02t0163300-01
Chr02	irgsp1_rep	CDS	3408734	3408742	.	+	0	Parent=Os02t0163300-01
Chr02	irgsp1_rep	three_prime_UTR	3408743	3409023	.	+	.	Parent=Os02t0163300-01
Chr02	irgsp1_rep	mRNA	3411221	3415257	.	+	.	ID=Os02t0163400-01;Name=Os02t0163400-01;Locus_id=Os02g0163400;Note=Hypothetical protein.;Transcript_evidence=AK121545 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033032B09;Expression=AK121545;TENOR=Os02t0163400-01;KEGG=Os02t0163400-01
Chr02	irgsp1_rep	five_prime_UTR	3411221	3411282	.	+	.	Parent=Os02t0163400-01
Chr02	irgsp1_rep	CDS	3411283	3411375	.	+	0	Parent=Os02t0163400-01
Chr02	irgsp1_rep	CDS	3411481	3411608	.	+	0	Parent=Os02t0163400-01
Chr02	irgsp1_rep	CDS	3413293	3413389	.	+	1	Parent=Os02t0163400-01
Chr02	irgsp1_rep	CDS	3415038	3415046	.	+	0	Parent=Os02t0163400-01
Chr02	irgsp1_rep	three_prime_UTR	3415047	3415257	.	+	.	Parent=Os02t0163400-01
Chr02	irgsp1_rep	mRNA	3415483	3418396	.	-	.	ID=Os02t0163500-01;Name=Os02t0163500-01;Locus_id=Os02g0163500;Note=Conserved hypothetical protein.;Transcript_evidence=AK070929 (DDBJ%2C Best hit);ORF_evidence=Q6H7Z4 (UniProt);NIAS_FLcDNA=J023069L12;Expression=AK070929;TENOR=Os02t0163500-01;KEGG=Os02t0163500-01
Chr02	irgsp1_rep	five_prime_UTR	3418350	3418396	.	-	.	Parent=Os02t0163500-01
Chr02	irgsp1_rep	five_prime_UTR	3418063	3418219	.	-	.	Parent=Os02t0163500-01
Chr02	irgsp1_rep	five_prime_UTR	3417760	3417778	.	-	.	Parent=Os02t0163500-01
Chr02	irgsp1_rep	CDS	3417589	3417759	.	-	0	Parent=Os02t0163500-01
Chr02	irgsp1_rep	CDS	3415911	3415990	.	-	0	Parent=Os02t0163500-01
Chr02	irgsp1_rep	CDS	3415693	3415822	.	-	1	Parent=Os02t0163500-01
Chr02	irgsp1_rep	three_prime_UTR	3415483	3415692	.	-	.	Parent=Os02t0163500-01
Chr02	irgsp1_rep	mRNA	3420286	3423446	.	-	.	ID=Os02t0163533-01;Name=Os02t0163533-01;Locus_id=Os02g0163533;Note=Conserved hypothetical protein.;Transcript_evidence=AK241536 (DDBJ%2C Best hit);ORF_evidence=NP_001172814.1 (RefSeq);NIAS_FLcDNA=J065173F08;TENOR=Os02t0163533-01;KEGG=Os02t0163533-01
Chr02	irgsp1_rep	five_prime_UTR	3423350	3423446	.	-	.	Parent=Os02t0163533-01
Chr02	irgsp1_rep	CDS	3423152	3423349	.	-	0	Parent=Os02t0163533-01
Chr02	irgsp1_rep	CDS	3420601	3420680	.	-	0	Parent=Os02t0163533-01
Chr02	irgsp1_rep	CDS	3420380	3420524	.	-	1	Parent=Os02t0163533-01
Chr02	irgsp1_rep	three_prime_UTR	3420286	3420379	.	-	.	Parent=Os02t0163533-01
Chr02	irgsp1_rep	mRNA	3428550	3431067	.	-	.	ID=Os02t0163600-01;Name=Os02t0163600-01;Locus_id=Os02g0163600;Note=Conserved hypothetical protein.;Transcript_evidence=AK068043 (DDBJ%2C Best hit);ORF_evidence=B8AI72 (UniProt);NIAS_FLcDNA=J013131O20;Expression=AK068043;TENOR=Os02t0163600-01;KEGG=Os02t0163600-01
Chr02	irgsp1_rep	five_prime_UTR	3431026	3431067	.	-	.	Parent=Os02t0163600-01
Chr02	irgsp1_rep	CDS	3430807	3431025	.	-	0	Parent=Os02t0163600-01
Chr02	irgsp1_rep	CDS	3430133	3430396	.	-	0	Parent=Os02t0163600-01
Chr02	irgsp1_rep	CDS	3429056	3429076	.	-	0	Parent=Os02t0163600-01
Chr02	irgsp1_rep	three_prime_UTR	3428550	3429055	.	-	.	Parent=Os02t0163600-01
Chr02	irgsp1_rep	mRNA	3441185	3446850	.	-	.	ID=Os02t0164000-00;Name=Os02t0164000-00;Locus_id=Os02g0164000;Note=Peptidase C48%2C SUMO/Sentrin/Ubl1 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001172817.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase C48%2C SUMO/Sentrin/Ubl1 (IPR003653);TENOR=Os02t0164000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	3446743	3446850	.	-	0	Parent=Os02t0164000-00
Chr02	irgsp1_rep	CDS	3446604	3446666	.	-	0	Parent=Os02t0164000-00
Chr02	irgsp1_rep	CDS	3446401	3446472	.	-	0	Parent=Os02t0164000-00
Chr02	irgsp1_rep	CDS	3446237	3446299	.	-	0	Parent=Os02t0164000-00
Chr02	irgsp1_rep	CDS	3445779	3446141	.	-	0	Parent=Os02t0164000-00
Chr02	irgsp1_rep	CDS	3445244	3445417	.	-	0	Parent=Os02t0164000-00
Chr02	irgsp1_rep	CDS	3444819	3445134	.	-	0	Parent=Os02t0164000-00
Chr02	irgsp1_rep	CDS	3444637	3444716	.	-	2	Parent=Os02t0164000-00
Chr02	irgsp1_rep	CDS	3444486	3444534	.	-	0	Parent=Os02t0164000-00
Chr02	irgsp1_rep	CDS	3444319	3444390	.	-	2	Parent=Os02t0164000-00
Chr02	irgsp1_rep	CDS	3444018	3444223	.	-	2	Parent=Os02t0164000-00
Chr02	irgsp1_rep	CDS	3443773	3443910	.	-	0	Parent=Os02t0164000-00
Chr02	irgsp1_rep	CDS	3443249	3443502	.	-	0	Parent=Os02t0164000-00
Chr02	irgsp1_rep	CDS	3442968	3443139	.	-	1	Parent=Os02t0164000-00
Chr02	irgsp1_rep	CDS	3442779	3442850	.	-	0	Parent=Os02t0164000-00
Chr02	irgsp1_rep	CDS	3442542	3442673	.	-	0	Parent=Os02t0164000-00
Chr02	irgsp1_rep	CDS	3441185	3441268	.	-	0	Parent=Os02t0164000-00
Chr02	irgsp1_rep	mRNA	3453698	3457174	.	+	.	ID=Os02t0164300-01;Name=Os02t0164300-01;Locus_id=Os02g0164300;Note=Similar to beta-1%2C3-galactosyltransferase sqv-2.;Transcript_evidence=AK072484 (DDBJ%2C Best hit);ORF_evidence=NP_001149120.1 (RefSeq);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Glycosyl transferase%2C family 31 (IPR002659);NIAS_FLcDNA=J023127C09;Expression=AK072484;TENOR=Os02t0164300-01;KEGG=Os02t0164300-01
Chr02	irgsp1_rep	five_prime_UTR	3453698	3453990	.	+	.	Parent=Os02t0164300-01
Chr02	irgsp1_rep	CDS	3453991	3454094	.	+	0	Parent=Os02t0164300-01
Chr02	irgsp1_rep	CDS	3454759	3454855	.	+	1	Parent=Os02t0164300-01
Chr02	irgsp1_rep	CDS	3455025	3455132	.	+	0	Parent=Os02t0164300-01
Chr02	irgsp1_rep	three_prime_UTR	3455133	3455621	.	+	.	Parent=Os02t0164300-01
Chr02	irgsp1_rep	three_prime_UTR	3455728	3457174	.	+	.	Parent=Os02t0164300-01
Chr02	irgsp1_rep	mRNA	3455972	3457537	.	+	.	ID=Os02t0164300-02;Name=Os02t0164300-02;Locus_id=Os02g0164300;Note=Glycosyl transferase%2C family 31 protein.;Transcript_evidence=AK063785 (DDBJ%2C Best hit);ORF_evidence=NP_001149120.1 (RefSeq);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Glycosyl transferase%2C family 31 (IPR002659);NIAS_FLcDNA=001-121-D11;Expression=AK063785;TENOR=Os02t0164300-02;KEGG=Os02t0164300-02
Chr02	irgsp1_rep	five_prime_UTR	3455972	3455973	.	+	.	Parent=Os02t0164300-02
Chr02	irgsp1_rep	CDS	3455974	3456049	.	+	0	Parent=Os02t0164300-02
Chr02	irgsp1_rep	CDS	3456359	3456446	.	+	2	Parent=Os02t0164300-02
Chr02	irgsp1_rep	CDS	3456548	3456673	.	+	1	Parent=Os02t0164300-02
Chr02	irgsp1_rep	CDS	3456773	3456882	.	+	1	Parent=Os02t0164300-02
Chr02	irgsp1_rep	CDS	3457006	3457154	.	+	2	Parent=Os02t0164300-02
Chr02	irgsp1_rep	three_prime_UTR	3457155	3457537	.	+	.	Parent=Os02t0164300-02
Chr02	irgsp1_rep	mRNA	3458171	3458730	.	+	.	ID=Os02t0164400-00;Name=Os02t0164400-00;Locus_id=Os02g0164400;Note=Hypothetical conserved gene.;Transcript_evidence=EU948279 (DDBJ);ORF_evidence=Q6H6W0 (UniProt);TENOR=Os02t0164400-00;KEGG=Os02t0164400-00
Chr02	irgsp1_rep	five_prime_UTR	3458171	3458252	.	+	.	Parent=Os02t0164400-00
Chr02	irgsp1_rep	CDS	3458253	3458633	.	+	0	Parent=Os02t0164400-00
Chr02	irgsp1_rep	three_prime_UTR	3458634	3458730	.	+	.	Parent=Os02t0164400-00
Chr02	irgsp1_rep	mRNA	3465970	3468922	.	+	.	ID=Os02t0164600-01;Name=Os02t0164600-01;Locus_id=Os02g0164600;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK103682 (DDBJ%2C Best hit);ORF_evidence=A2X198 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J033136E21;Expression=AK103682;TENOR=Os02t0164600-01;KEGG=Os02t0164600-01
Chr02	irgsp1_rep	five_prime_UTR	3465970	3465982	.	+	.	Parent=Os02t0164600-01
Chr02	irgsp1_rep	CDS	3465983	3467413	.	+	0	Parent=Os02t0164600-01
Chr02	irgsp1_rep	three_prime_UTR	3467414	3467465	.	+	.	Parent=Os02t0164600-01
Chr02	irgsp1_rep	three_prime_UTR	3468055	3468922	.	+	.	Parent=Os02t0164600-01
Chr02	irgsp1_rep	mRNA	3473348	3474123	.	+	.	ID=Os02t0164800-01;Name=Os02t0164800-01;Locus_id=Os02g0164800;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK062817 (DDBJ%2C Best hit);ORF_evidence=NP_175482.1 (RefSeq);NIAS_FLcDNA=001-107-E09;Expression=AK062817;TENOR=Os02t0164800-01;KEGG=Os02t0164800-01
Chr02	irgsp1_rep	CDS	3473348	3473466	.	+	0	Parent=Os02t0164800-01
Chr02	irgsp1_rep	CDS	3473754	3473829	.	+	1	Parent=Os02t0164800-01
Chr02	irgsp1_rep	CDS	3473927	3473983	.	+	0	Parent=Os02t0164800-01
Chr02	irgsp1_rep	three_prime_UTR	3473984	3474123	.	+	.	Parent=Os02t0164800-01
Chr02	irgsp1_rep	mRNA	3486813	3492905	.	+	.	ID=Os02t0164900-01;Name=Os02t0164900-01;Locus_id=Os02g0164900;CGSNL Gene Symbol=ARF6A;CGSNL Gene Name=AUXIN RESPONSE FACTOR 6A;Oryzabase Gene Symbol Synonym(s)=OsARF6a%2C OsARF6%2C ARF6;Oryzabase Gene Name Synonym(s)=auxin response factor-6a%2C auxin response factor 6a%2C auxin response factor-6%2C auxin response factor 6%2C auxin responsive factor 6;Note=Similar to Auxin response factor 3.;Transcript_evidence=AK070569 (DDBJ%2C Best hit);ORF_evidence=Q6H6V4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: response to hormone stimulus (GO:0009725),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Transcriptional factor B3 (IPR003340),Auxin response factor (IPR010525),Aux/IAA-ARF-dimerisation (IPR011525),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=J023056C15;Oryzabase=9999;Expression=AK070569;TENOR=Os02t0164900-01;KEGG=Os02t0164900-01
Chr02	irgsp1_rep	five_prime_UTR	3486813	3487579	.	+	.	Parent=Os02t0164900-01
Chr02	irgsp1_rep	CDS	3487580	3487637	.	+	0	Parent=Os02t0164900-01
Chr02	irgsp1_rep	CDS	3488283	3488401	.	+	2	Parent=Os02t0164900-01
Chr02	irgsp1_rep	CDS	3488602	3488700	.	+	0	Parent=Os02t0164900-01
Chr02	irgsp1_rep	CDS	3488797	3488853	.	+	0	Parent=Os02t0164900-01
Chr02	irgsp1_rep	CDS	3488956	3489111	.	+	0	Parent=Os02t0164900-01
Chr02	irgsp1_rep	CDS	3489229	3489313	.	+	0	Parent=Os02t0164900-01
Chr02	irgsp1_rep	CDS	3489491	3489581	.	+	2	Parent=Os02t0164900-01
Chr02	irgsp1_rep	CDS	3489695	3489859	.	+	1	Parent=Os02t0164900-01
Chr02	irgsp1_rep	CDS	3489925	3490047	.	+	1	Parent=Os02t0164900-01
Chr02	irgsp1_rep	CDS	3490246	3490321	.	+	1	Parent=Os02t0164900-01
Chr02	irgsp1_rep	CDS	3490488	3490635	.	+	0	Parent=Os02t0164900-01
Chr02	irgsp1_rep	CDS	3490771	3491936	.	+	2	Parent=Os02t0164900-01
Chr02	irgsp1_rep	CDS	3492043	3492233	.	+	0	Parent=Os02t0164900-01
Chr02	irgsp1_rep	CDS	3492323	3492515	.	+	1	Parent=Os02t0164900-01
Chr02	irgsp1_rep	three_prime_UTR	3492516	3492905	.	+	.	Parent=Os02t0164900-01
Chr02	irgsp1_rep	mRNA	3487434	3492876	.	+	.	ID=Os02t0164900-02;Name=Os02t0164900-02;Locus_id=Os02g0164900;CGSNL Gene Symbol=ARF6A;CGSNL Gene Name=AUXIN RESPONSE FACTOR 6A;Oryzabase Gene Symbol Synonym(s)=OsARF6a%2C OsARF6%2C ARF6;Oryzabase Gene Name Synonym(s)=auxin response factor-6a%2C auxin response factor 6a%2C auxin response factor-6%2C auxin response factor 6%2C auxin responsive factor 6;Note=Similar to Auxin response factor 3.;Transcript_evidence=AK066725 (DDBJ%2C Best hit);ORF_evidence=Q6H6V4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: response to hormone stimulus (GO:0009725),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Transcriptional factor B3 (IPR003340),Auxin response factor (IPR010525),Aux/IAA-ARF-dimerisation (IPR011525),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=J013074M13;Oryzabase=9999;Expression=AK066725;TENOR=Os02t0164900-02;KEGG=Os02t0164900-02
Chr02	irgsp1_rep	five_prime_UTR	3487434	3487579	.	+	.	Parent=Os02t0164900-02
Chr02	irgsp1_rep	CDS	3487580	3487637	.	+	0	Parent=Os02t0164900-02
Chr02	irgsp1_rep	CDS	3488283	3488401	.	+	2	Parent=Os02t0164900-02
Chr02	irgsp1_rep	CDS	3488602	3488700	.	+	0	Parent=Os02t0164900-02
Chr02	irgsp1_rep	CDS	3488797	3488853	.	+	0	Parent=Os02t0164900-02
Chr02	irgsp1_rep	CDS	3488956	3489111	.	+	0	Parent=Os02t0164900-02
Chr02	irgsp1_rep	CDS	3489229	3489313	.	+	0	Parent=Os02t0164900-02
Chr02	irgsp1_rep	CDS	3489491	3489581	.	+	2	Parent=Os02t0164900-02
Chr02	irgsp1_rep	CDS	3489695	3489859	.	+	1	Parent=Os02t0164900-02
Chr02	irgsp1_rep	CDS	3489925	3490047	.	+	1	Parent=Os02t0164900-02
Chr02	irgsp1_rep	CDS	3490246	3490321	.	+	1	Parent=Os02t0164900-02
Chr02	irgsp1_rep	CDS	3490488	3490635	.	+	0	Parent=Os02t0164900-02
Chr02	irgsp1_rep	CDS	3490771	3491936	.	+	2	Parent=Os02t0164900-02
Chr02	irgsp1_rep	CDS	3492043	3492233	.	+	0	Parent=Os02t0164900-02
Chr02	irgsp1_rep	CDS	3492323	3492515	.	+	1	Parent=Os02t0164900-02
Chr02	irgsp1_rep	three_prime_UTR	3492516	3492876	.	+	.	Parent=Os02t0164900-02
Chr02	irgsp1_rep	mRNA	3495320	3500149	.	-	.	ID=Os02t0165000-01;Name=Os02t0165000-01;Locus_id=Os02g0165000;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK069562 (DDBJ%2C Best hit);ORF_evidence=B8AI80 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-CH-type (IPR011016),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J023019O21;TENOR=Os02t0165000-01
Chr02	irgsp1_rep	five_prime_UTR	3500056	3500149	.	-	.	Parent=Os02t0165000-01
Chr02	irgsp1_rep	CDS	3499996	3500055	.	-	0	Parent=Os02t0165000-01
Chr02	irgsp1_rep	CDS	3498351	3498797	.	-	0	Parent=Os02t0165000-01
Chr02	irgsp1_rep	CDS	3497587	3497761	.	-	0	Parent=Os02t0165000-01
Chr02	irgsp1_rep	CDS	3497130	3497424	.	-	2	Parent=Os02t0165000-01
Chr02	irgsp1_rep	CDS	3496864	3496936	.	-	1	Parent=Os02t0165000-01
Chr02	irgsp1_rep	CDS	3496667	3496757	.	-	0	Parent=Os02t0165000-01
Chr02	irgsp1_rep	CDS	3496169	3496248	.	-	2	Parent=Os02t0165000-01
Chr02	irgsp1_rep	CDS	3495794	3496036	.	-	0	Parent=Os02t0165000-01
Chr02	irgsp1_rep	three_prime_UTR	3495750	3495793	.	-	.	Parent=Os02t0165000-01
Chr02	irgsp1_rep	three_prime_UTR	3495320	3495653	.	-	.	Parent=Os02t0165000-01
Chr02	irgsp1_rep	mRNA	3495330	3500112	.	-	.	ID=Os02t0165000-02;Name=Os02t0165000-02;Locus_id=Os02g0165000;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK101610 (DDBJ%2C Best hit);ORF_evidence=B8AI80 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-CH-type (IPR011016),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J033052D01;TENOR=Os02t0165000-02
Chr02	irgsp1_rep	five_prime_UTR	3500056	3500112	.	-	.	Parent=Os02t0165000-02
Chr02	irgsp1_rep	CDS	3499996	3500055	.	-	0	Parent=Os02t0165000-02
Chr02	irgsp1_rep	CDS	3498351	3498797	.	-	0	Parent=Os02t0165000-02
Chr02	irgsp1_rep	CDS	3497587	3497761	.	-	0	Parent=Os02t0165000-02
Chr02	irgsp1_rep	CDS	3497130	3497424	.	-	2	Parent=Os02t0165000-02
Chr02	irgsp1_rep	CDS	3496864	3496936	.	-	1	Parent=Os02t0165000-02
Chr02	irgsp1_rep	CDS	3496667	3496757	.	-	0	Parent=Os02t0165000-02
Chr02	irgsp1_rep	CDS	3496169	3496248	.	-	2	Parent=Os02t0165000-02
Chr02	irgsp1_rep	CDS	3495794	3496036	.	-	0	Parent=Os02t0165000-02
Chr02	irgsp1_rep	three_prime_UTR	3495750	3495793	.	-	.	Parent=Os02t0165000-02
Chr02	irgsp1_rep	three_prime_UTR	3495330	3495653	.	-	.	Parent=Os02t0165000-02
Chr02	irgsp1_rep	mRNA	3504423	3508658	.	+	.	ID=Os02t0165100-01;Name=Os02t0165100-01;Locus_id=Os02g0165100;CGSNL Gene Symbol=RLCK63;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 63;Oryzabase Gene Symbol Synonym(s)=OsRLCK63;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 63;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK066645 (DDBJ%2C Best hit);ORF_evidence=NP_001148145.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013073C06;Oryzabase=18779;Expression=AK066645;TENOR=Os02t0165100-01;KEGG=Os02t0165100-01
Chr02	irgsp1_rep	five_prime_UTR	3504423	3504601	.	+	.	Parent=Os02t0165100-01
Chr02	irgsp1_rep	five_prime_UTR	3505725	3505838	.	+	.	Parent=Os02t0165100-01
Chr02	irgsp1_rep	CDS	3505839	3505905	.	+	0	Parent=Os02t0165100-01
Chr02	irgsp1_rep	CDS	3506014	3506129	.	+	2	Parent=Os02t0165100-01
Chr02	irgsp1_rep	CDS	3506229	3506439	.	+	0	Parent=Os02t0165100-01
Chr02	irgsp1_rep	CDS	3506557	3506794	.	+	2	Parent=Os02t0165100-01
Chr02	irgsp1_rep	CDS	3507104	3507254	.	+	1	Parent=Os02t0165100-01
Chr02	irgsp1_rep	CDS	3508000	3508383	.	+	0	Parent=Os02t0165100-01
Chr02	irgsp1_rep	three_prime_UTR	3508384	3508658	.	+	.	Parent=Os02t0165100-01
Chr02	irgsp1_rep	mRNA	3507769	3512094	.	-	.	ID=Os02t0165200-01;Name=Os02t0165200-01;Locus_id=Os02g0165200;Note=Hypothetical protein.;Transcript_evidence=AK101881 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033070K10;Expression=AK101881;TENOR=Os02t0165200-01;KEGG=Os02t0165200-01
Chr02	irgsp1_rep	five_prime_UTR	3508416	3512094	.	-	.	Parent=Os02t0165200-01
Chr02	irgsp1_rep	CDS	3508011	3508415	.	-	0	Parent=Os02t0165200-01
Chr02	irgsp1_rep	three_prime_UTR	3507769	3508010	.	-	.	Parent=Os02t0165200-01
Chr02	irgsp1_rep	mRNA	3540933	3542667	.	+	.	ID=Os02t0165500-01;Name=Os02t0165500-01;Locus_id=Os02g0165500;Note=Conserved hypothetical protein.;Transcript_evidence=AK060547 (DDBJ%2C Best hit);ORF_evidence=A2X1A6 (UniProt);NIAS_FLcDNA=001-021-G04;Expression=AK060547;TENOR=Os02t0165500-01;KEGG=Os02t0165500-01
Chr02	irgsp1_rep	five_prime_UTR	3540933	3541057	.	+	.	Parent=Os02t0165500-01
Chr02	irgsp1_rep	CDS	3541058	3542278	.	+	0	Parent=Os02t0165500-01
Chr02	irgsp1_rep	three_prime_UTR	3542279	3542667	.	+	.	Parent=Os02t0165500-01
Chr02	irgsp1_rep	mRNA	3548382	3549142	.	+	.	ID=Os02t0165800-01;Name=Os02t0165800-01;Locus_id=Os02g0165800;Note=Conserved hypothetical protein.;Transcript_evidence=AK106983 (DDBJ%2C Best hit);ORF_evidence=A2X1A7 (UniProt);NIAS_FLcDNA=002-119-H10;Expression=AK106983;TENOR=Os02t0165800-01;KEGG=Os02t0165800-01
Chr02	irgsp1_rep	five_prime_UTR	3548382	3548603	.	+	.	Parent=Os02t0165800-01
Chr02	irgsp1_rep	CDS	3548604	3548903	.	+	0	Parent=Os02t0165800-01
Chr02	irgsp1_rep	three_prime_UTR	3548904	3549142	.	+	.	Parent=Os02t0165800-01
Chr02	irgsp1_rep	mRNA	3557488	3560496	.	+	.	ID=Os02t0166200-01;Name=Os02t0166200-01;Locus_id=Os02g0166200;Note=Non-protein coding transcript.;Transcript_evidence=AK066189 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013052P16;TENOR=Os02t0166200-01
Chr02	irgsp1_rep	exon	3557488	3557717	.	+	.	Parent=Os02t0166200-01
Chr02	irgsp1_rep	exon	3558479	3560496	.	+	.	Parent=Os02t0166200-01
Chr02	irgsp1_rep	mRNA	3572264	3573102	.	+	.	ID=Os02t0166501-00;Name=Os02t0166501-00;Locus_id=Os02g0166501;Note=Hypothetical conserved gene.;Transcript_evidence=CT835482 (DDBJ%2C Best hit);ORF_evidence=Q6H4W8 (UniProt);TENOR=Os02t0166501-00;KEGG=Os02t0166501-00
Chr02	irgsp1_rep	five_prime_UTR	3572264	3572318	.	+	.	Parent=Os02t0166501-00
Chr02	irgsp1_rep	five_prime_UTR	3572488	3572515	.	+	.	Parent=Os02t0166501-00
Chr02	irgsp1_rep	CDS	3572516	3572731	.	+	0	Parent=Os02t0166501-00
Chr02	irgsp1_rep	three_prime_UTR	3572732	3573102	.	+	.	Parent=Os02t0166501-00
Chr02	irgsp1_rep	mRNA	3580321	3581706	.	+	.	ID=Os02t0166600-01;Name=Os02t0166600-01;Locus_id=Os02g0166600;Note=Hypothetical protein.;Transcript_evidence=AK069371 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023013P12;Expression=AK069371;TENOR=Os02t0166600-01;KEGG=Os02t0166600-01
Chr02	irgsp1_rep	five_prime_UTR	3580321	3580631	.	+	.	Parent=Os02t0166600-01
Chr02	irgsp1_rep	CDS	3580632	3581042	.	+	0	Parent=Os02t0166600-01
Chr02	irgsp1_rep	three_prime_UTR	3581043	3581706	.	+	.	Parent=Os02t0166600-01
Chr02	irgsp1_rep	mRNA	3594428	3596589	.	+	.	ID=Os02t0166800-01;Name=Os02t0166800-01;Locus_id=Os02g0166800;CGSNL Gene Symbol=G1L1;CGSNL Gene Name=G1 LIKE PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsG1L1;Note=Protein of unknown function DUF640 domain containing protein.;Transcript_evidence=AK106854 (DDBJ%2C Best hit);ORF_evidence=D1MYE3 (UniProt);InterPro=Domain of unknown function DUF640 (IPR006936);NIAS_FLcDNA=002-118-B06;Oryzabase=8882;Expression=AK106854;TENOR=Os02t0166800-01;KEGG=Os02t0166800-01
Chr02	irgsp1_rep	five_prime_UTR	3594428	3595375	.	+	.	Parent=Os02t0166800-01
Chr02	irgsp1_rep	CDS	3595376	3595887	.	+	0	Parent=Os02t0166800-01
Chr02	irgsp1_rep	CDS	3596125	3596188	.	+	1	Parent=Os02t0166800-01
Chr02	irgsp1_rep	three_prime_UTR	3596189	3596589	.	+	.	Parent=Os02t0166800-01
Chr02	irgsp1_rep	mRNA	3595652	3596095	.	-	.	ID=Os02t0166875-00;Name=Os02t0166875-00;Locus_id=Os02g0166875;Note=Hypothetical protein.;Transcript_evidence=EU970153 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0166875-00
Chr02	irgsp1_rep	CDS	3595652	3596095	.	-	0	Parent=Os02t0166875-00
Chr02	irgsp1_rep	mRNA	3607092	3610230	.	-	.	ID=Os02t0166950-01;Name=Os02t0166950-01;Locus_id=Os02g0166950;Note=Hypothetical gene.;Transcript_evidence=AK243419 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100066K03;TENOR=Os02t0166950-01;KEGG=Os02t0166950-01
Chr02	irgsp1_rep	five_prime_UTR	3609798	3610230	.	-	.	Parent=Os02t0166950-01
Chr02	irgsp1_rep	five_prime_UTR	3609556	3609632	.	-	.	Parent=Os02t0166950-01
Chr02	irgsp1_rep	five_prime_UTR	3609417	3609483	.	-	.	Parent=Os02t0166950-01
Chr02	irgsp1_rep	five_prime_UTR	3609044	3609089	.	-	.	Parent=Os02t0166950-01
Chr02	irgsp1_rep	five_prime_UTR	3608641	3608796	.	-	.	Parent=Os02t0166950-01
Chr02	irgsp1_rep	five_prime_UTR	3608421	3608541	.	-	.	Parent=Os02t0166950-01
Chr02	irgsp1_rep	five_prime_UTR	3608268	3608289	.	-	.	Parent=Os02t0166950-01
Chr02	irgsp1_rep	CDS	3608141	3608267	.	-	0	Parent=Os02t0166950-01
Chr02	irgsp1_rep	CDS	3607603	3607664	.	-	2	Parent=Os02t0166950-01
Chr02	irgsp1_rep	CDS	3607430	3607516	.	-	0	Parent=Os02t0166950-01
Chr02	irgsp1_rep	three_prime_UTR	3607092	3607429	.	-	.	Parent=Os02t0166950-01
Chr02	irgsp1_rep	mRNA	3607122	3609843	.	+	.	ID=Os02t0167000-00;Name=Os02t0167000-00;Locus_id=Os02g0167000;Note=Similar to holocarboxylase synthetase 1.;Transcript_evidence=AK375247 (DDBJ);ORF_evidence=XP_002878877.1 (RefSeq);GO=Biological Process: protein modification process (GO:0006464),Molecular Function: catalytic activity (GO:0003824),Molecular Function: biotin-[acetyl-CoA-carboxylase] ligase activity (GO:0004077);InterPro=Biotin protein ligase%2C C-terminal (IPR003142),Biotin/lipoate A/B protein ligase (IPR004143),Biotin--acetyl-CoA-carboxylase ligase (IPR004408);TENOR=Os02t0167000-00
Chr02	irgsp1_rep	CDS	3607122	3607516	.	+	0	Parent=Os02t0167000-00
Chr02	irgsp1_rep	CDS	3607603	3607664	.	+	1	Parent=Os02t0167000-00
Chr02	irgsp1_rep	CDS	3608141	3608289	.	+	2	Parent=Os02t0167000-00
Chr02	irgsp1_rep	CDS	3608421	3608541	.	+	0	Parent=Os02t0167000-00
Chr02	irgsp1_rep	CDS	3608641	3608796	.	+	2	Parent=Os02t0167000-00
Chr02	irgsp1_rep	CDS	3609044	3609089	.	+	2	Parent=Os02t0167000-00
Chr02	irgsp1_rep	CDS	3609417	3609483	.	+	1	Parent=Os02t0167000-00
Chr02	irgsp1_rep	CDS	3609556	3609632	.	+	0	Parent=Os02t0167000-00
Chr02	irgsp1_rep	CDS	3609798	3609843	.	+	1	Parent=Os02t0167000-00
Chr02	irgsp1_rep	mRNA	3610970	3613988	.	+	.	ID=Os02t0167100-01;Name=Os02t0167100-01;Locus_id=Os02g0167100;CGSNL Gene Symbol=STR23;CGSNL Gene Name=SULFURTRANSFERASE 23;Oryzabase Gene Symbol Synonym(s)=OsStr23;Oryzabase Gene Name Synonym(s)=Sulfurtransferase 23;Note=Similar to 3-mercaptopyruvate sulfurtransferase precursor (EC 2.8.1.1).;Transcript_evidence=AK066425 (DDBJ%2C Best hit);ORF_evidence=Q94C43 (UniProt);GO=Molecular Function: thiosulfate sulfurtransferase activity (GO:0004792);InterPro=Thiosulphate sulfurtransferase%2C conserved site (IPR001307),Rhodanese-like (IPR001763);NIAS_FLcDNA=J013065E05;Oryzabase=12073;Expression=AK066425;TENOR=Os02t0167100-01;KEGG=Os02t0167100-01 (EC:2.8.1.1%2C EC:2.8.1.2)
Chr02	irgsp1_rep	five_prime_UTR	3610970	3611017	.	+	.	Parent=Os02t0167100-01
Chr02	irgsp1_rep	five_prime_UTR	3611108	3611147	.	+	.	Parent=Os02t0167100-01
Chr02	irgsp1_rep	CDS	3611148	3611216	.	+	0	Parent=Os02t0167100-01
Chr02	irgsp1_rep	CDS	3611555	3611614	.	+	0	Parent=Os02t0167100-01
Chr02	irgsp1_rep	CDS	3611704	3611766	.	+	0	Parent=Os02t0167100-01
Chr02	irgsp1_rep	CDS	3612010	3612134	.	+	0	Parent=Os02t0167100-01
Chr02	irgsp1_rep	CDS	3612263	3612425	.	+	1	Parent=Os02t0167100-01
Chr02	irgsp1_rep	CDS	3612509	3612568	.	+	0	Parent=Os02t0167100-01
Chr02	irgsp1_rep	CDS	3612805	3612863	.	+	0	Parent=Os02t0167100-01
Chr02	irgsp1_rep	CDS	3613060	3613141	.	+	1	Parent=Os02t0167100-01
Chr02	irgsp1_rep	CDS	3613230	3613293	.	+	0	Parent=Os02t0167100-01
Chr02	irgsp1_rep	CDS	3613509	3613576	.	+	2	Parent=Os02t0167100-01
Chr02	irgsp1_rep	CDS	3613651	3613761	.	+	0	Parent=Os02t0167100-01
Chr02	irgsp1_rep	three_prime_UTR	3613762	3613988	.	+	.	Parent=Os02t0167100-01
Chr02	irgsp1_rep	mRNA	3614133	3616333	.	-	.	ID=Os02t0167200-01;Name=Os02t0167200-01;Locus_id=Os02g0167200;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK106491 (DDBJ%2C Best hit);ORF_evidence=Q6H4W1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-105-A12;Expression=AK106491;TENOR=Os02t0167200-01;KEGG=Os02t0167200-01
Chr02	irgsp1_rep	CDS	3614753	3616333	.	-	0	Parent=Os02t0167200-01
Chr02	irgsp1_rep	three_prime_UTR	3614133	3614752	.	-	.	Parent=Os02t0167200-01
Chr02	irgsp1_rep	mRNA	3619840	3622862	.	+	.	ID=Os02t0167300-01;Name=Os02t0167300-01;Locus_id=Os02g0167300;CGSNL Gene Symbol=TUB5;CGSNL Gene Name=BETA-TUBULIN 5;Oryzabase Gene Symbol Synonym(s)=OsTUB5%2C TUBB5%2C OSTB-50%2C R2242;Oryzabase Gene Name Synonym(s)=beta tubulin 5%2C Tubulin beta-5 chain%2C Beta-5-tubulin;Note=Tubulin beta-3 chain (Beta-3 tubulin).;Transcript_evidence=AK121574 (DDBJ%2C Best hit);ORF_evidence=P46265 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: microtubule-based process (GO:0007017),Biological Process: microtubule-based movement (GO:0007018),Biological Process: protein polymerization (GO:0051258),Cellular Component: microtubule (GO:0005874),Cellular Component: protein complex (GO:0043234),Molecular Function: GTPase activity (GO:0003924),Molecular Function: structural molecule activity (GO:0005198),Molecular Function: GTP binding (GO:0005525);InterPro=Tubulin (IPR000217),Beta tubulin (IPR002453),Tubulin/FtsZ%2C GTPase domain (IPR003008),Tubulin/FtsZ%2C C-terminal (IPR008280),Beta tubulin%2C autoregulation binding site (IPR013838),Tubulin%2C conserved site (IPR017975),Tubulin/FtsZ%2C 2-layer sandwich domain (IPR018316),Tubulin%2C C-terminal (IPR023123);NIAS_FLcDNA=J033036C16;Oryzabase=2960;TENOR=Os02t0167300-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	3619840	3619911	.	+	.	Parent=Os02t0167300-01
Chr02	irgsp1_rep	CDS	3619912	3620305	.	+	0	Parent=Os02t0167300-01
Chr02	irgsp1_rep	CDS	3621126	3621395	.	+	2	Parent=Os02t0167300-01
Chr02	irgsp1_rep	CDS	3621791	3622470	.	+	2	Parent=Os02t0167300-01
Chr02	irgsp1_rep	three_prime_UTR	3622471	3622862	.	+	.	Parent=Os02t0167300-01
Chr02	irgsp1_rep	mRNA	3621165	3622794	.	+	.	ID=Os02t0167300-02;Name=Os02t0167300-02;Locus_id=Os02g0167300;CGSNL Gene Symbol=TUB5;CGSNL Gene Name=BETA-TUBULIN 5;Oryzabase Gene Symbol Synonym(s)=OsTUB5%2C TUBB5%2C OSTB-50%2C R2242;Oryzabase Gene Name Synonym(s)=beta tubulin 5%2C Tubulin beta-5 chain%2C Beta-5-tubulin;Note=Similar to Tubulin beta-5 chain.;Transcript_evidence=AK061659 (DDBJ%2C Best hit),AK119164 (DDBJ%2C Best hit);ORF_evidence=P46265 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: microtubule-based process (GO:0007017),Biological Process: microtubule-based movement (GO:0007018),Biological Process: protein polymerization (GO:0051258),Cellular Component: microtubule (GO:0005874),Cellular Component: protein complex (GO:0043234),Molecular Function: GTPase activity (GO:0003924),Molecular Function: structural molecule activity (GO:0005198),Molecular Function: GTP binding (GO:0005525);InterPro=Tubulin (IPR000217),Beta tubulin (IPR002453),Tubulin/FtsZ%2C GTPase domain (IPR003008),Tubulin/FtsZ%2C C-terminal (IPR008280),Tubulin/FtsZ%2C 2-layer sandwich domain (IPR018316),Tubulin%2C C-terminal (IPR023123);NIAS_FLcDNA=001-036-D12,001-036-E05;Oryzabase=2960;TENOR=Os02t0167300-02;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	3621165	3621166	.	+	.	Parent=Os02t0167300-02
Chr02	irgsp1_rep	CDS	3621167	3621395	.	+	0	Parent=Os02t0167300-02
Chr02	irgsp1_rep	CDS	3621791	3622470	.	+	2	Parent=Os02t0167300-02
Chr02	irgsp1_rep	three_prime_UTR	3622471	3622794	.	+	.	Parent=Os02t0167300-02
Chr02	irgsp1_rep	mRNA	3619823	3622457	.	-	.	ID=Os02t0167366-00;Name=Os02t0167366-00;Locus_id=Os02g0167366;Note=Hypothetical protein.;Transcript_evidence=tplb0045b10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0167366-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	3622023	3622457	.	-	.	Parent=Os02t0167366-00
Chr02	irgsp1_rep	CDS	3621791	3622022	.	-	0	Parent=Os02t0167366-00
Chr02	irgsp1_rep	CDS	3621195	3621394	.	-	2	Parent=Os02t0167366-00
Chr02	irgsp1_rep	three_prime_UTR	3621124	3621194	.	-	.	Parent=Os02t0167366-00
Chr02	irgsp1_rep	three_prime_UTR	3619823	3620298	.	-	.	Parent=Os02t0167366-00
Chr02	irgsp1_rep	mRNA	3623229	3623298	.	+	.	ID=Os02t0167400-00;Name=Os02t0167400-00;Locus_id=Os02g0167400;Note=Non-protein coding transcript.;Transcript_evidence=X06283 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0167400-00
Chr02	irgsp1_rep	exon	3623229	3623298	.	+	.	Parent=Os02t0167400-00
Chr02	irgsp1_rep	mRNA	3623786	3631539	.	-	.	ID=Os02t0167500-01;Name=Os02t0167500-01;Locus_id=Os02g0167500;Note=RNA recognition motif domain domain containing protein.;Transcript_evidence=AK069161 (DDBJ%2C Best hit);ORF_evidence=B9F385 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA recognition motif domain (IPR000504),Zinc finger%2C RanBP2-type (IPR001876),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023008A08;TENOR=Os02t0167500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	3631243	3631539	.	-	.	Parent=Os02t0167500-01
Chr02	irgsp1_rep	five_prime_UTR	3630203	3630467	.	-	.	Parent=Os02t0167500-01
Chr02	irgsp1_rep	CDS	3630126	3630202	.	-	0	Parent=Os02t0167500-01
Chr02	irgsp1_rep	CDS	3629729	3629918	.	-	1	Parent=Os02t0167500-01
Chr02	irgsp1_rep	CDS	3629168	3629596	.	-	0	Parent=Os02t0167500-01
Chr02	irgsp1_rep	CDS	3629005	3629076	.	-	0	Parent=Os02t0167500-01
Chr02	irgsp1_rep	CDS	3628825	3628917	.	-	0	Parent=Os02t0167500-01
Chr02	irgsp1_rep	CDS	3628662	3628741	.	-	0	Parent=Os02t0167500-01
Chr02	irgsp1_rep	CDS	3627847	3628000	.	-	1	Parent=Os02t0167500-01
Chr02	irgsp1_rep	CDS	3627264	3627349	.	-	0	Parent=Os02t0167500-01
Chr02	irgsp1_rep	CDS	3627097	3627187	.	-	1	Parent=Os02t0167500-01
Chr02	irgsp1_rep	CDS	3626951	3627019	.	-	0	Parent=Os02t0167500-01
Chr02	irgsp1_rep	CDS	3626704	3626874	.	-	0	Parent=Os02t0167500-01
Chr02	irgsp1_rep	CDS	3626314	3626482	.	-	0	Parent=Os02t0167500-01
Chr02	irgsp1_rep	CDS	3625212	3626150	.	-	2	Parent=Os02t0167500-01
Chr02	irgsp1_rep	CDS	3624528	3624781	.	-	2	Parent=Os02t0167500-01
Chr02	irgsp1_rep	three_prime_UTR	3623786	3624527	.	-	.	Parent=Os02t0167500-01
Chr02	irgsp1_rep	mRNA	3655252	3656179	.	+	.	ID=Os02t0167600-01;Name=Os02t0167600-01;Locus_id=Os02g0167600;CGSNL Gene Symbol=SAUR6;CGSNL Gene Name=SMALL AUXIN-UP RNA 6;Oryzabase Gene Symbol Synonym(s)=OsSAUR6;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 6;Note=Hypothetical gene.;Transcript_evidence=AK242059 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J075126H18;Oryzabase=9131;TENOR=Os02t0167600-01;KEGG=Os02t0167600-01
Chr02	irgsp1_rep	five_prime_UTR	3655252	3655252	.	+	.	Parent=Os02t0167600-01
Chr02	irgsp1_rep	CDS	3655253	3655340	.	+	0	Parent=Os02t0167600-01
Chr02	irgsp1_rep	CDS	3655693	3655883	.	+	2	Parent=Os02t0167600-01
Chr02	irgsp1_rep	three_prime_UTR	3655884	3656179	.	+	.	Parent=Os02t0167600-01
Chr02	irgsp1_rep	mRNA	3659299	3669323	.	-	.	ID=Os02t0167700-01;Name=Os02t0167700-01;Locus_id=Os02g0167700;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK069128 (DDBJ%2C Best hit);ORF_evidence=NP_001030954.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),TATA-binding protein interacting (TIP20) (IPR013932),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023003N20;Expression=AK069128;TENOR=Os02t0167700-01;KEGG=Os02t0167700-01
Chr02	irgsp1_rep	five_prime_UTR	3669031	3669323	.	-	.	Parent=Os02t0167700-01
Chr02	irgsp1_rep	five_prime_UTR	3668581	3668636	.	-	.	Parent=Os02t0167700-01
Chr02	irgsp1_rep	CDS	3668545	3668580	.	-	0	Parent=Os02t0167700-01
Chr02	irgsp1_rep	CDS	3668273	3668442	.	-	0	Parent=Os02t0167700-01
Chr02	irgsp1_rep	CDS	3667653	3667860	.	-	1	Parent=Os02t0167700-01
Chr02	irgsp1_rep	CDS	3666166	3666331	.	-	0	Parent=Os02t0167700-01
Chr02	irgsp1_rep	CDS	3665934	3666063	.	-	2	Parent=Os02t0167700-01
Chr02	irgsp1_rep	CDS	3665598	3665712	.	-	1	Parent=Os02t0167700-01
Chr02	irgsp1_rep	CDS	3665360	3665517	.	-	0	Parent=Os02t0167700-01
Chr02	irgsp1_rep	CDS	3665155	3665278	.	-	1	Parent=Os02t0167700-01
Chr02	irgsp1_rep	CDS	3664911	3664961	.	-	0	Parent=Os02t0167700-01
Chr02	irgsp1_rep	CDS	3664745	3664827	.	-	0	Parent=Os02t0167700-01
Chr02	irgsp1_rep	CDS	3664504	3664588	.	-	1	Parent=Os02t0167700-01
Chr02	irgsp1_rep	CDS	3664340	3664441	.	-	0	Parent=Os02t0167700-01
Chr02	irgsp1_rep	CDS	3664165	3664263	.	-	0	Parent=Os02t0167700-01
Chr02	irgsp1_rep	CDS	3663977	3664087	.	-	0	Parent=Os02t0167700-01
Chr02	irgsp1_rep	CDS	3663816	3663899	.	-	0	Parent=Os02t0167700-01
Chr02	irgsp1_rep	CDS	3663598	3663738	.	-	0	Parent=Os02t0167700-01
Chr02	irgsp1_rep	CDS	3662979	3663071	.	-	0	Parent=Os02t0167700-01
Chr02	irgsp1_rep	CDS	3662751	3662869	.	-	0	Parent=Os02t0167700-01
Chr02	irgsp1_rep	CDS	3662514	3662676	.	-	1	Parent=Os02t0167700-01
Chr02	irgsp1_rep	CDS	3662199	3662435	.	-	0	Parent=Os02t0167700-01
Chr02	irgsp1_rep	CDS	3661475	3661723	.	-	0	Parent=Os02t0167700-01
Chr02	irgsp1_rep	CDS	3661206	3661391	.	-	0	Parent=Os02t0167700-01
Chr02	irgsp1_rep	CDS	3660959	3661105	.	-	0	Parent=Os02t0167700-01
Chr02	irgsp1_rep	CDS	3660760	3660876	.	-	0	Parent=Os02t0167700-01
Chr02	irgsp1_rep	CDS	3660489	3660657	.	-	0	Parent=Os02t0167700-01
Chr02	irgsp1_rep	CDS	3660164	3660241	.	-	2	Parent=Os02t0167700-01
Chr02	irgsp1_rep	CDS	3659926	3660064	.	-	2	Parent=Os02t0167700-01
Chr02	irgsp1_rep	CDS	3659567	3659663	.	-	1	Parent=Os02t0167700-01
Chr02	irgsp1_rep	three_prime_UTR	3659299	3659566	.	-	.	Parent=Os02t0167700-01
Chr02	irgsp1_rep	mRNA	3672581	3672989	.	-	.	ID=Os02t0167850-00;Name=Os02t0167850-00;Locus_id=Os02g0167850;Note=Non-protein coding transcript.;Transcript_evidence=CT835346 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os02t0167850-00
Chr02	irgsp1_rep	exon	3672915	3672989	.	-	.	Parent=Os02t0167850-00
Chr02	irgsp1_rep	exon	3672581	3672904	.	-	.	Parent=Os02t0167850-00
Chr02	irgsp1_rep	mRNA	3672974	3677649	.	+	.	ID=Os02t0168000-01;Name=Os02t0168000-01;Locus_id=Os02g0168000;Note=Similar to urease accessory protein F.;Transcript_evidence=AK288008 (DDBJ%2C Best hit);ORF_evidence=E0ZS46 (UniProt);GO=Biological Process: nitrogen compound metabolic process (GO:0006807),Molecular Function: nickel ion binding (GO:0016151);InterPro=Urease accessory protein UreF (IPR002639);NIAS_FLcDNA=J075112P20;TENOR=Os02t0168000-01;KEGG=Os02t0168000-01
Chr02	irgsp1_rep	five_prime_UTR	3672974	3673578	.	+	.	Parent=Os02t0168000-01
Chr02	irgsp1_rep	five_prime_UTR	3673855	3674408	.	+	.	Parent=Os02t0168000-01
Chr02	irgsp1_rep	five_prime_UTR	3674554	3674997	.	+	.	Parent=Os02t0168000-01
Chr02	irgsp1_rep	five_prime_UTR	3676055	3676107	.	+	.	Parent=Os02t0168000-01
Chr02	irgsp1_rep	CDS	3676108	3676893	.	+	0	Parent=Os02t0168000-01
Chr02	irgsp1_rep	three_prime_UTR	3676894	3676900	.	+	.	Parent=Os02t0168000-01
Chr02	irgsp1_rep	three_prime_UTR	3677326	3677649	.	+	.	Parent=Os02t0168000-01
Chr02	irgsp1_rep	mRNA	3674682	3677044	.	+	.	ID=Os02t0168000-02;Name=Os02t0168000-02;Locus_id=Os02g0168000;Note=Similar to UreF.;Transcript_evidence=AK106654 (DDBJ%2C Best hit);ORF_evidence=E0ZS46 (UniProt);GO=Biological Process: nitrogen compound metabolic process (GO:0006807),Molecular Function: nickel ion binding (GO:0016151);InterPro=Urease accessory protein UreF (IPR002639);NIAS_FLcDNA=002-113-G03;Expression=AK106654;TENOR=Os02t0168000-02;KEGG=Os02t0168000-02
Chr02	irgsp1_rep	five_prime_UTR	3674682	3676014	.	+	.	Parent=Os02t0168000-02
Chr02	irgsp1_rep	CDS	3676015	3676893	.	+	0	Parent=Os02t0168000-02
Chr02	irgsp1_rep	three_prime_UTR	3676894	3677044	.	+	.	Parent=Os02t0168000-02
Chr02	irgsp1_rep	mRNA	3677525	3679266	.	-	.	ID=Os02t0168100-01;Name=Os02t0168100-01;Locus_id=Os02g0168100;Oryzabase Gene Symbol Synonym(s)=OsHPPD%2C HPPD%2C Osl30%2C l30;Oryzabase Gene Name Synonym(s)=4-hydroxyphenylpyruvate dioxygenase%2C p-hydroxyphenylpyruvate dioxygenase;Note=Similar to 4-hydroxyphenylpyruvate dioxygenase.;Transcript_evidence=AK058890 (DDBJ%2C Best hit);ORF_evidence=O48604 (UniProt);GO=Biological Process: aromatic amino acid family metabolic process (GO:0009072),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: 4-hydroxyphenylpyruvate dioxygenase activity (GO:0003868),Molecular Function: oxidoreductase activity%2C acting on single donors with incorporation of molecular oxygen (GO:0016701);InterPro=Glyoxalase/fosfomycin resistance/dioxygenase (IPR004360),4-hydroxyphenylpyruvate dioxygenase (IPR005956);NIAS_FLcDNA=001-007-D10;Oryzabase=13862;TENOR=Os02t0168100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	3678734	3679266	.	-	0	Parent=Os02t0168100-01
Chr02	irgsp1_rep	CDS	3677789	3677975	.	-	1	Parent=Os02t0168100-01
Chr02	irgsp1_rep	three_prime_UTR	3677525	3677788	.	-	.	Parent=Os02t0168100-01
Chr02	irgsp1_rep	mRNA	3682192	3684126	.	-	.	ID=Os02t0168200-01;Name=Os02t0168200-01;Locus_id=Os02g0168200;Oryzabase Gene Name Synonym(s)=OsMPH1 homologue;Note=Similar to Transfactor-like protein.;Transcript_evidence=AK108211 (DDBJ%2C Best hit);ORF_evidence=NP_001147627.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778);NIAS_FLcDNA=002-140-D10;Oryzabase=21922;Expression=AK108211;TENOR=Os02t0168200-01;KEGG=Os02t0168200-01
Chr02	irgsp1_rep	five_prime_UTR	3684007	3684126	.	-	.	Parent=Os02t0168200-01
Chr02	irgsp1_rep	CDS	3683838	3684006	.	-	0	Parent=Os02t0168200-01
Chr02	irgsp1_rep	CDS	3683074	3683150	.	-	2	Parent=Os02t0168200-01
Chr02	irgsp1_rep	CDS	3682833	3682973	.	-	0	Parent=Os02t0168200-01
Chr02	irgsp1_rep	CDS	3682386	3682706	.	-	0	Parent=Os02t0168200-01
Chr02	irgsp1_rep	three_prime_UTR	3682192	3682385	.	-	.	Parent=Os02t0168200-01
Chr02	irgsp1_rep	mRNA	3687883	3690834	.	-	.	ID=Os02t0168250-00;Name=Os02t0168250-00;Locus_id=Os02g0168250;Note=Hypothetical protein.;Transcript_evidence=tplb0050a13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0168250-00
Chr02	irgsp1_rep	five_prime_UTR	3690754	3690834	.	-	.	Parent=Os02t0168250-00
Chr02	irgsp1_rep	five_prime_UTR	3689778	3690674	.	-	.	Parent=Os02t0168250-00
Chr02	irgsp1_rep	five_prime_UTR	3689634	3689699	.	-	.	Parent=Os02t0168250-00
Chr02	irgsp1_rep	CDS	3689612	3689633	.	-	0	Parent=Os02t0168250-00
Chr02	irgsp1_rep	CDS	3688331	3688460	.	-	2	Parent=Os02t0168250-00
Chr02	irgsp1_rep	CDS	3687883	3688119	.	-	1	Parent=Os02t0168250-00
Chr02	irgsp1_rep	mRNA	3687919	3691304	.	+	.	ID=Os02t0168300-01;Name=Os02t0168300-01;Locus_id=Os02g0168300;Note=Conserved hypothetical protein.;Transcript_evidence=AK103301 (DDBJ%2C Best hit);ORF_evidence=B8AIH7 (UniProt);NIAS_FLcDNA=J033125C15;Expression=AK103301;TENOR=Os02t0168300-01;KEGG=Os02t0168300-01
Chr02	irgsp1_rep	five_prime_UTR	3687919	3688044	.	+	.	Parent=Os02t0168300-01
Chr02	irgsp1_rep	CDS	3688045	3688104	.	+	0	Parent=Os02t0168300-01
Chr02	irgsp1_rep	CDS	3688209	3688263	.	+	0	Parent=Os02t0168300-01
Chr02	irgsp1_rep	CDS	3688383	3688456	.	+	2	Parent=Os02t0168300-01
Chr02	irgsp1_rep	CDS	3689615	3689707	.	+	0	Parent=Os02t0168300-01
Chr02	irgsp1_rep	CDS	3689812	3689855	.	+	0	Parent=Os02t0168300-01
Chr02	irgsp1_rep	CDS	3689953	3690667	.	+	1	Parent=Os02t0168300-01
Chr02	irgsp1_rep	CDS	3690751	3690833	.	+	0	Parent=Os02t0168300-01
Chr02	irgsp1_rep	CDS	3690920	3690965	.	+	1	Parent=Os02t0168300-01
Chr02	irgsp1_rep	three_prime_UTR	3690966	3691304	.	+	.	Parent=Os02t0168300-01
Chr02	irgsp1_rep	mRNA	3696212	3699700	.	+	.	ID=Os02t0168400-01;Name=Os02t0168400-01;Locus_id=Os02g0168400;Note=Hypothetical conserved gene.;Transcript_evidence=AK241031 (DDBJ%2C Best hit);ORF_evidence=A3A3J4 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J065058G05;TENOR=Os02t0168400-01;KEGG=Os02t0168400-01
Chr02	irgsp1_rep	five_prime_UTR	3696212	3696262	.	+	.	Parent=Os02t0168400-01
Chr02	irgsp1_rep	CDS	3696263	3696276	.	+	0	Parent=Os02t0168400-01
Chr02	irgsp1_rep	CDS	3697088	3698065	.	+	1	Parent=Os02t0168400-01
Chr02	irgsp1_rep	CDS	3698196	3698340	.	+	1	Parent=Os02t0168400-01
Chr02	irgsp1_rep	CDS	3698429	3698680	.	+	0	Parent=Os02t0168400-01
Chr02	irgsp1_rep	CDS	3698783	3699092	.	+	0	Parent=Os02t0168400-01
Chr02	irgsp1_rep	CDS	3699418	3699527	.	+	2	Parent=Os02t0168400-01
Chr02	irgsp1_rep	three_prime_UTR	3699528	3699700	.	+	.	Parent=Os02t0168400-01
Chr02	irgsp1_rep	mRNA	3703074	3705337	.	+	.	ID=Os02t0168500-01;Name=Os02t0168500-01;Locus_id=Os02g0168500;Note=Similar to Protein-O-fucosyltransferase 1.;Transcript_evidence=AK073486 (DDBJ%2C Best hit);ORF_evidence=Q659R8 (UniProt);InterPro=GDP-fucose protein O-fucosyltransferase (IPR019378);NIAS_FLcDNA=J033043N20;Expression=AK073486;TENOR=Os02t0168500-01;KEGG=Os02t0168500-01
Chr02	irgsp1_rep	five_prime_UTR	3703074	3703369	.	+	.	Parent=Os02t0168500-01
Chr02	irgsp1_rep	five_prime_UTR	3703514	3703522	.	+	.	Parent=Os02t0168500-01
Chr02	irgsp1_rep	five_prime_UTR	3703606	3703717	.	+	.	Parent=Os02t0168500-01
Chr02	irgsp1_rep	CDS	3703718	3705043	.	+	0	Parent=Os02t0168500-01
Chr02	irgsp1_rep	three_prime_UTR	3705044	3705337	.	+	.	Parent=Os02t0168500-01
Chr02	irgsp1_rep	mRNA	3703087	3705337	.	+	.	ID=Os02t0168500-02;Name=Os02t0168500-02;Locus_id=Os02g0168500;Note=Similar to Protein-O-fucosyltransferase 1.;Transcript_evidence=AK073338 (DDBJ%2C Best hit);ORF_evidence=Q659R8 (UniProt);InterPro=GDP-fucose protein O-fucosyltransferase (IPR019378);NIAS_FLcDNA=J033029D16;Expression=AK073338;TENOR=Os02t0168500-02;KEGG=Os02t0168500-02
Chr02	irgsp1_rep	five_prime_UTR	3703087	3703369	.	+	.	Parent=Os02t0168500-02
Chr02	irgsp1_rep	five_prime_UTR	3703514	3703717	.	+	.	Parent=Os02t0168500-02
Chr02	irgsp1_rep	CDS	3703718	3705043	.	+	0	Parent=Os02t0168500-02
Chr02	irgsp1_rep	three_prime_UTR	3705044	3705337	.	+	.	Parent=Os02t0168500-02
Chr02	irgsp1_rep	mRNA	3703670	3705482	.	-	.	ID=Os02t0168550-00;Name=Os02t0168550-00;Locus_id=Os02g0168550;Note=Non-protein coding transcript.;Transcript_evidence=tplb0046d03 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os02t0168550-00
Chr02	irgsp1_rep	exon	3703670	3705482	.	-	.	Parent=Os02t0168550-00
Chr02	irgsp1_rep	mRNA	3705886	3709904	.	-	.	ID=Os02t0168600-01;Name=Os02t0168600-01;Locus_id=Os02g0168600;Oryzabase Gene Symbol Synonym(s)=OsOTU1;Oryzabase Gene Name Synonym(s)=OUT like cysteine protease 1;Note=Ovarian tumour%2C otubain domain containing protein.;Transcript_evidence=AK067291 (DDBJ%2C Best hit);ORF_evidence=B6U3W2 (UniProt);InterPro=Ovarian tumour%2C otubain (IPR003323);NIAS_FLcDNA=J013104L05;Oryzabase=15675;Expression=AK067291;TENOR=Os02t0168600-01;KEGG=Os02t0168600-01
Chr02	irgsp1_rep	five_prime_UTR	3709752	3709904	.	-	.	Parent=Os02t0168600-01
Chr02	irgsp1_rep	five_prime_UTR	3708772	3708808	.	-	.	Parent=Os02t0168600-01
Chr02	irgsp1_rep	CDS	3708610	3708771	.	-	0	Parent=Os02t0168600-01
Chr02	irgsp1_rep	CDS	3708321	3708394	.	-	0	Parent=Os02t0168600-01
Chr02	irgsp1_rep	CDS	3708189	3708243	.	-	1	Parent=Os02t0168600-01
Chr02	irgsp1_rep	CDS	3707778	3707852	.	-	0	Parent=Os02t0168600-01
Chr02	irgsp1_rep	CDS	3707569	3707642	.	-	0	Parent=Os02t0168600-01
Chr02	irgsp1_rep	CDS	3707427	3707475	.	-	1	Parent=Os02t0168600-01
Chr02	irgsp1_rep	CDS	3706737	3706821	.	-	0	Parent=Os02t0168600-01
Chr02	irgsp1_rep	CDS	3706439	3706495	.	-	2	Parent=Os02t0168600-01
Chr02	irgsp1_rep	CDS	3706126	3706169	.	-	2	Parent=Os02t0168600-01
Chr02	irgsp1_rep	three_prime_UTR	3705886	3706125	.	-	.	Parent=Os02t0168600-01
Chr02	irgsp1_rep	mRNA	3711186	3713407	.	-	.	ID=Os02t0168700-01;Name=Os02t0168700-01;Locus_id=Os02g0168700;Oryzabase Gene Symbol Synonym(s)=OsFKBP17-1;Oryzabase Gene Name Synonym(s)=FK506 binding protein 17-1;Note=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type domain containing protein.;Transcript_evidence=AK061562 (DDBJ%2C Best hit);ORF_evidence=NP_001148684.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457);InterPro=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type%2C domain (IPR001179),Twin-arginine translocation pathway%2C signal sequence (IPR006311),Peptidyl-prolyl cis-trans isomerase%2C FKBP-type (IPR023566);NIAS_FLcDNA=006-311-E02;Oryzabase=10032;Expression=AK061562;TENOR=Os02t0168700-01;KEGG=Os02t0168700-01
Chr02	irgsp1_rep	five_prime_UTR	3713404	3713407	.	-	.	Parent=Os02t0168700-01
Chr02	irgsp1_rep	CDS	3713128	3713403	.	-	0	Parent=Os02t0168700-01
Chr02	irgsp1_rep	CDS	3712717	3712839	.	-	0	Parent=Os02t0168700-01
Chr02	irgsp1_rep	CDS	3711906	3712022	.	-	0	Parent=Os02t0168700-01
Chr02	irgsp1_rep	CDS	3711478	3711603	.	-	0	Parent=Os02t0168700-01
Chr02	irgsp1_rep	three_prime_UTR	3711186	3711477	.	-	.	Parent=Os02t0168700-01
Chr02	irgsp1_rep	mRNA	3715361	3718245	.	+	.	ID=Os02t0168800-01;Name=Os02t0168800-01;Locus_id=Os02g0168800;Oryzabase Gene Symbol Synonym(s)=PBD%2C PBGD%2C HEMC;Oryzabase Gene Name Synonym(s)=Porphobilinogen deaminase;Note=Similar to Porphobilinogen deaminase (Fragment).;Transcript_evidence=AK060914 (DDBJ%2C Best hit);ORF_evidence=Q6H6D2 (UniProt);GO=Biological Process: peptidyl-pyrromethane cofactor linkage (GO:0018160),Biological Process: tetrapyrrole biosynthetic process (GO:0033014),Molecular Function: hydroxymethylbilane synthase activity (GO:0004418);InterPro=Tetrapyrrole biosynthesis%2C hydroxymethylbilane synthase (IPR000860),Porphobilinogen deaminase%2C N-terminal (IPR022417),Porphobilinogen deaminase%2C C-terminal (IPR022418),Porphobilinogen deaminase%2C dipyrromethane cofactor binding site (IPR022419);NIAS_FLcDNA=001-035-G03;Oryzabase=19969;Expression=AK060914;TENOR=Os02t0168800-01;KEGG=Os02t0168800-01 (EC:2.5.1.61)
Chr02	irgsp1_rep	five_prime_UTR	3715361	3715408	.	+	.	Parent=Os02t0168800-01
Chr02	irgsp1_rep	CDS	3715409	3715578	.	+	0	Parent=Os02t0168800-01
Chr02	irgsp1_rep	CDS	3716306	3716711	.	+	1	Parent=Os02t0168800-01
Chr02	irgsp1_rep	CDS	3716885	3717088	.	+	0	Parent=Os02t0168800-01
Chr02	irgsp1_rep	CDS	3717555	3717732	.	+	0	Parent=Os02t0168800-01
Chr02	irgsp1_rep	CDS	3717836	3717954	.	+	2	Parent=Os02t0168800-01
Chr02	irgsp1_rep	three_prime_UTR	3717955	3718245	.	+	.	Parent=Os02t0168800-01
Chr02	irgsp1_rep	mRNA	3716056	3718262	.	+	.	ID=Os02t0168800-02;Name=Os02t0168800-02;Locus_id=Os02g0168800;Oryzabase Gene Symbol Synonym(s)=PBD%2C PBGD%2C HEMC;Oryzabase Gene Name Synonym(s)=Porphobilinogen deaminase;Note=Similar to Porphobilinogen deaminase%2C chloroplastic.;Transcript_evidence=AK102265 (DDBJ%2C Best hit);ORF_evidence=Q6H6D2 (UniProt);GO=Biological Process: peptidyl-pyrromethane cofactor linkage (GO:0018160),Biological Process: tetrapyrrole biosynthetic process (GO:0033014),Molecular Function: hydroxymethylbilane synthase activity (GO:0004418);InterPro=Tetrapyrrole biosynthesis%2C hydroxymethylbilane synthase (IPR000860),Porphobilinogen deaminase%2C N-terminal (IPR022417),Porphobilinogen deaminase%2C C-terminal (IPR022418),Porphobilinogen deaminase%2C dipyrromethane cofactor binding site (IPR022419);NIAS_FLcDNA=J033088M20;Oryzabase=19969;Expression=AK102265;TENOR=Os02t0168800-02;KEGG=Os02t0168800-02 (EC:2.5.1.61)
Chr02	irgsp1_rep	five_prime_UTR	3716056	3716300	.	+	.	Parent=Os02t0168800-02
Chr02	irgsp1_rep	CDS	3716301	3716711	.	+	0	Parent=Os02t0168800-02
Chr02	irgsp1_rep	CDS	3716885	3717088	.	+	0	Parent=Os02t0168800-02
Chr02	irgsp1_rep	CDS	3717555	3717732	.	+	0	Parent=Os02t0168800-02
Chr02	irgsp1_rep	CDS	3717836	3717954	.	+	2	Parent=Os02t0168800-02
Chr02	irgsp1_rep	three_prime_UTR	3717955	3718262	.	+	.	Parent=Os02t0168800-02
Chr02	irgsp1_rep	mRNA	3716574	3717957	.	-	.	ID=Os02t0168850-00;Name=Os02t0168850-00;Locus_id=Os02g0168850;Note=Hypothetical gene.;Transcript_evidence=Y12809 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0168850-00;KEGG=Os02t0168850-00
Chr02	irgsp1_rep	CDS	3717834	3717957	.	-	0	Parent=Os02t0168850-00
Chr02	irgsp1_rep	CDS	3717564	3717726	.	-	2	Parent=Os02t0168850-00
Chr02	irgsp1_rep	CDS	3717051	3717096	.	-	1	Parent=Os02t0168850-00
Chr02	irgsp1_rep	three_prime_UTR	3716888	3717050	.	-	.	Parent=Os02t0168850-00
Chr02	irgsp1_rep	three_prime_UTR	3716574	3716714	.	-	.	Parent=Os02t0168850-00
Chr02	irgsp1_rep	mRNA	3718362	3720114	.	-	.	ID=Os02t0168900-01;Name=Os02t0168900-01;Locus_id=Os02g0168900;Oryzabase Gene Name Synonym(s)=expressed protein;Note=Ribonuclease H2%2C subunit C domain containing protein.;Transcript_evidence=AK102098 (DDBJ%2C Best hit);ORF_evidence=A2X1D0 (UniProt);InterPro=Ribonuclease H2%2C subunit C (IPR013924);NIAS_FLcDNA=J033083J16;Oryzabase=20430;Expression=AK102098;TENOR=Os02t0168900-01;KEGG=Os02t0168900-01
Chr02	irgsp1_rep	CDS	3719964	3720114	.	-	0	Parent=Os02t0168900-01
Chr02	irgsp1_rep	CDS	3719788	3719880	.	-	2	Parent=Os02t0168900-01
Chr02	irgsp1_rep	CDS	3719352	3719527	.	-	2	Parent=Os02t0168900-01
Chr02	irgsp1_rep	CDS	3718798	3718863	.	-	0	Parent=Os02t0168900-01
Chr02	irgsp1_rep	three_prime_UTR	3718362	3718797	.	-	.	Parent=Os02t0168900-01
Chr02	irgsp1_rep	mRNA	3720874	3724570	.	-	.	ID=Os02t0169000-01;Name=Os02t0169000-01;Locus_id=Os02g0169000;Note=Similar to T6H22.2 protein.;Transcript_evidence=AK101628 (DDBJ%2C Best hit);ORF_evidence=Q9SGU5 (UniProt);NIAS_FLcDNA=J033054L07;TENOR=Os02t0169000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	3724531	3724570	.	-	.	Parent=Os02t0169000-01
Chr02	irgsp1_rep	CDS	3724158	3724530	.	-	0	Parent=Os02t0169000-01
Chr02	irgsp1_rep	CDS	3723444	3723503	.	-	2	Parent=Os02t0169000-01
Chr02	irgsp1_rep	CDS	3722947	3723195	.	-	2	Parent=Os02t0169000-01
Chr02	irgsp1_rep	CDS	3722697	3722773	.	-	2	Parent=Os02t0169000-01
Chr02	irgsp1_rep	CDS	3721761	3721837	.	-	0	Parent=Os02t0169000-01
Chr02	irgsp1_rep	CDS	3721531	3721663	.	-	1	Parent=Os02t0169000-01
Chr02	irgsp1_rep	CDS	3721288	3721443	.	-	0	Parent=Os02t0169000-01
Chr02	irgsp1_rep	three_prime_UTR	3720874	3721287	.	-	.	Parent=Os02t0169000-01
Chr02	irgsp1_rep	mRNA	3727735	3731136	.	-	.	ID=Os02t0169151-00;Name=Os02t0169151-00;Locus_id=Os02g0169151;Note=Hypothetical gene.;Transcript_evidence=BT016355 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0169151-00
Chr02	irgsp1_rep	five_prime_UTR	3730990	3731136	.	-	.	Parent=Os02t0169151-00
Chr02	irgsp1_rep	CDS	3730769	3730989	.	-	0	Parent=Os02t0169151-00
Chr02	irgsp1_rep	CDS	3730518	3730686	.	-	1	Parent=Os02t0169151-00
Chr02	irgsp1_rep	CDS	3730192	3730230	.	-	0	Parent=Os02t0169151-00
Chr02	irgsp1_rep	three_prime_UTR	3729922	3730191	.	-	.	Parent=Os02t0169151-00
Chr02	irgsp1_rep	three_prime_UTR	3729293	3729553	.	-	.	Parent=Os02t0169151-00
Chr02	irgsp1_rep	three_prime_UTR	3729112	3729193	.	-	.	Parent=Os02t0169151-00
Chr02	irgsp1_rep	three_prime_UTR	3727735	3727936	.	-	.	Parent=Os02t0169151-00
Chr02	irgsp1_rep	mRNA	3741693	3742632	.	-	.	ID=Os02t0169275-00;Name=Os02t0169275-00;Locus_id=Os02g0169275;Note=Non-protein coding transcript.;Transcript_evidence=FP098893 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0169275-00
Chr02	irgsp1_rep	exon	3741927	3742632	.	-	.	Parent=Os02t0169275-00
Chr02	irgsp1_rep	exon	3741693	3741874	.	-	.	Parent=Os02t0169275-00
Chr02	irgsp1_rep	mRNA	3727551	3731217	.	+	.	ID=Os02t0169300-01;Name=Os02t0169300-01;Locus_id=Os02g0169300;CGSNL Gene Symbol=PGK2;CGSNL Gene Name=PHOSPHOGLYCERATE KINASE 2;Oryzabase Gene Symbol Synonym(s)=OsPGK2%2C OsPGK2a%2C OsPGK2b%2C OsPGK2c%2C PKP;Oryzabase Gene Name Synonym(s)="phosphoglycerate kinase%2C cytosolic"%2C Phosphoglycerate kinase 2%2C phosphoglycerate kinase-2%2C Phosphoglycerate kinase protein;Note=Similar to Phosphoglycerate kinase%2C cytosolic (EC 2.7.2.3).;Transcript_evidence=AK070041 (DDBJ%2C Best hit);ORF_evidence=B8AIH2 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Molecular Function: phosphoglycerate kinase activity (GO:0004618);InterPro=Phosphoglycerate kinase (IPR001576),Phosphoglycerate kinase%2C N-terminal (IPR015824),Phosphoglycerate kinase%2C C-terminal (IPR015901),Phosphoglycerate kinase%2C conserved site (IPR015911);NIAS_FLcDNA=J023036N24;Oryzabase=17646;Expression=AK070041;TENOR=Os02t0169300-01;KEGG=Os02t0169300-01 (EC:2.7.2.3)
Chr02	irgsp1_rep	five_prime_UTR	3727551	3727621	.	+	.	Parent=Os02t0169300-01
Chr02	irgsp1_rep	five_prime_UTR	3727732	3727744	.	+	.	Parent=Os02t0169300-01
Chr02	irgsp1_rep	CDS	3727745	3727939	.	+	0	Parent=Os02t0169300-01
Chr02	irgsp1_rep	CDS	3729118	3729195	.	+	0	Parent=Os02t0169300-01
Chr02	irgsp1_rep	CDS	3729295	3729555	.	+	0	Parent=Os02t0169300-01
Chr02	irgsp1_rep	CDS	3729924	3730241	.	+	0	Parent=Os02t0169300-01
Chr02	irgsp1_rep	CDS	3730530	3730688	.	+	0	Parent=Os02t0169300-01
Chr02	irgsp1_rep	CDS	3730771	3730968	.	+	0	Parent=Os02t0169300-01
Chr02	irgsp1_rep	three_prime_UTR	3730969	3731217	.	+	.	Parent=Os02t0169300-01
Chr02	irgsp1_rep	mRNA	3748511	3755492	.	-	.	ID=Os02t0169400-01;Name=Os02t0169400-01;Locus_id=Os02g0169400;RAP-DB Gene Symbol Synonym(s)=OsAGO17;RAP-DB Gene Name Synonym(s)=argonaute 17;CGSNL Gene Symbol=AGO17;CGSNL Gene Name=ARGONAUTE 17;Oryzabase Gene Symbol Synonym(s)=OsAGO17;Oryzabase Gene Name Synonym(s)=Protein argonaute 17;Note=Argonaute (AGO) protein%2C Regulation of grain size and weight%2C Promotion of stem development;Transcript_evidence=AK106247;ORF_evidence=Q6H6C3;GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515);InterPro=PAZ domain superfamily (IPR036085),Ribonuclease H-like superfamily (IPR012337),Ribonuclease H superfamily (IPR036397),Protein argonaute%2C N-terminal (IPR032474),Argonaute%2C linker 1 domain (IPR014811),PAZ domain (IPR003100),Argonaute linker 2 domain (IPR032472),Piwi domain (IPR003165);NIAS_FLcDNA=002-100-D08;Manual Curation=September 19%2C 2019;Literature_PMID=31529568;Oryzabase=8266;Expression=AK106247;TENOR=Os02t0169400-01;KEGG=Os02t0169400-01;Subcellular location=nucleus (GO:0005634)
Chr02	irgsp1_rep	five_prime_UTR	3755351	3755492	.	-	.	Parent=Os02t0169400-01
Chr02	irgsp1_rep	five_prime_UTR	3754865	3754899	.	-	.	Parent=Os02t0169400-01
Chr02	irgsp1_rep	CDS	3754652	3754864	.	-	0	Parent=Os02t0169400-01
Chr02	irgsp1_rep	CDS	3754212	3754567	.	-	0	Parent=Os02t0169400-01
Chr02	irgsp1_rep	CDS	3753997	3754130	.	-	1	Parent=Os02t0169400-01
Chr02	irgsp1_rep	CDS	3753381	3753493	.	-	2	Parent=Os02t0169400-01
Chr02	irgsp1_rep	CDS	3753165	3753256	.	-	0	Parent=Os02t0169400-01
Chr02	irgsp1_rep	CDS	3752956	3753043	.	-	1	Parent=Os02t0169400-01
Chr02	irgsp1_rep	CDS	3752733	3752849	.	-	0	Parent=Os02t0169400-01
Chr02	irgsp1_rep	CDS	3751487	3751594	.	-	0	Parent=Os02t0169400-01
Chr02	irgsp1_rep	CDS	3751328	3751399	.	-	0	Parent=Os02t0169400-01
Chr02	irgsp1_rep	CDS	3751061	3751183	.	-	0	Parent=Os02t0169400-01
Chr02	irgsp1_rep	CDS	3750801	3750966	.	-	0	Parent=Os02t0169400-01
Chr02	irgsp1_rep	CDS	3750573	3750694	.	-	2	Parent=Os02t0169400-01
Chr02	irgsp1_rep	CDS	3750361	3750498	.	-	0	Parent=Os02t0169400-01
Chr02	irgsp1_rep	CDS	3750104	3750246	.	-	0	Parent=Os02t0169400-01
Chr02	irgsp1_rep	CDS	3749951	3750013	.	-	1	Parent=Os02t0169400-01
Chr02	irgsp1_rep	CDS	3749705	3749768	.	-	1	Parent=Os02t0169400-01
Chr02	irgsp1_rep	CDS	3749477	3749609	.	-	0	Parent=Os02t0169400-01
Chr02	irgsp1_rep	CDS	3749315	3749388	.	-	2	Parent=Os02t0169400-01
Chr02	irgsp1_rep	CDS	3749129	3749223	.	-	0	Parent=Os02t0169400-01
Chr02	irgsp1_rep	CDS	3749013	3749044	.	-	1	Parent=Os02t0169400-01
Chr02	irgsp1_rep	CDS	3748706	3748890	.	-	2	Parent=Os02t0169400-01
Chr02	irgsp1_rep	three_prime_UTR	3748511	3748705	.	-	.	Parent=Os02t0169400-01
Chr02	irgsp1_rep	mRNA	3749126	3750016	.	+	.	ID=Os02t0169450-00;Name=Os02t0169450-00;Locus_id=Os02g0169450;Note=Non-protein coding transcript.;Transcript_evidence=BT016774 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0169450-00
Chr02	irgsp1_rep	exon	3749126	3749218	.	+	.	Parent=Os02t0169450-00
Chr02	irgsp1_rep	exon	3749309	3749393	.	+	.	Parent=Os02t0169450-00
Chr02	irgsp1_rep	exon	3749480	3749671	.	+	.	Parent=Os02t0169450-00
Chr02	irgsp1_rep	exon	3749943	3750016	.	+	.	Parent=Os02t0169450-00
Chr02	irgsp1_rep	mRNA	3772299	3776057	.	+	.	ID=Os02t0169700-01;Name=Os02t0169700-01;Locus_id=Os02g0169700;Note=Glycine cleavage H-protein family protein.;Transcript_evidence=AK105565 (DDBJ%2C Best hit);ORF_evidence=NP_001152670.1 (RefSeq);GO=Biological Process: glycine catabolic process (GO:0006546),Biological Process: glycine decarboxylation via glycine cleavage system (GO:0019464),Cellular Component: glycine cleavage complex (GO:0005960);InterPro=Glycine cleavage H-protein (IPR002930),Single hybrid motif (IPR011053),Glycine cleavage H-protein%2C subgroup (IPR017453);NIAS_FLcDNA=001-128-C07;Expression=AK105565;TENOR=Os02t0169700-01;KEGG=Os02t0169700-01
Chr02	irgsp1_rep	five_prime_UTR	3772299	3772913	.	+	.	Parent=Os02t0169700-01
Chr02	irgsp1_rep	five_prime_UTR	3773662	3774048	.	+	.	Parent=Os02t0169700-01
Chr02	irgsp1_rep	five_prime_UTR	3774126	3774158	.	+	.	Parent=Os02t0169700-01
Chr02	irgsp1_rep	five_prime_UTR	3774242	3774310	.	+	.	Parent=Os02t0169700-01
Chr02	irgsp1_rep	five_prime_UTR	3774391	3774466	.	+	.	Parent=Os02t0169700-01
Chr02	irgsp1_rep	five_prime_UTR	3774870	3774996	.	+	.	Parent=Os02t0169700-01
Chr02	irgsp1_rep	CDS	3774997	3775045	.	+	0	Parent=Os02t0169700-01
Chr02	irgsp1_rep	CDS	3775138	3775226	.	+	2	Parent=Os02t0169700-01
Chr02	irgsp1_rep	CDS	3775445	3775618	.	+	0	Parent=Os02t0169700-01
Chr02	irgsp1_rep	CDS	3775696	3775824	.	+	0	Parent=Os02t0169700-01
Chr02	irgsp1_rep	three_prime_UTR	3775825	3776057	.	+	.	Parent=Os02t0169700-01
Chr02	irgsp1_rep	mRNA	3778039	3791798	.	+	.	ID=Os02t0169800-01;Name=Os02t0169800-01;Locus_id=Os02g0169800;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK065409 (DDBJ%2C Best hit);ORF_evidence=NP_001030954.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013011H16;Expression=AK065409;TENOR=Os02t0169800-01;KEGG=Os02t0169800-01
Chr02	irgsp1_rep	five_prime_UTR	3778039	3778159	.	+	.	Parent=Os02t0169800-01
Chr02	irgsp1_rep	five_prime_UTR	3778218	3778348	.	+	.	Parent=Os02t0169800-01
Chr02	irgsp1_rep	five_prime_UTR	3779354	3779442	.	+	.	Parent=Os02t0169800-01
Chr02	irgsp1_rep	five_prime_UTR	3779544	3779596	.	+	.	Parent=Os02t0169800-01
Chr02	irgsp1_rep	CDS	3779597	3779712	.	+	0	Parent=Os02t0169800-01
Chr02	irgsp1_rep	CDS	3780123	3780330	.	+	1	Parent=Os02t0169800-01
Chr02	irgsp1_rep	CDS	3781449	3781614	.	+	0	Parent=Os02t0169800-01
Chr02	irgsp1_rep	CDS	3781716	3781845	.	+	2	Parent=Os02t0169800-01
Chr02	irgsp1_rep	CDS	3782063	3782175	.	+	1	Parent=Os02t0169800-01
Chr02	irgsp1_rep	CDS	3782258	3782469	.	+	2	Parent=Os02t0169800-01
Chr02	irgsp1_rep	three_prime_UTR	3782470	3782622	.	+	.	Parent=Os02t0169800-01
Chr02	irgsp1_rep	three_prime_UTR	3782797	3782847	.	+	.	Parent=Os02t0169800-01
Chr02	irgsp1_rep	three_prime_UTR	3782942	3783022	.	+	.	Parent=Os02t0169800-01
Chr02	irgsp1_rep	three_prime_UTR	3783179	3783265	.	+	.	Parent=Os02t0169800-01
Chr02	irgsp1_rep	three_prime_UTR	3783328	3783429	.	+	.	Parent=Os02t0169800-01
Chr02	irgsp1_rep	three_prime_UTR	3783507	3783605	.	+	.	Parent=Os02t0169800-01
Chr02	irgsp1_rep	three_prime_UTR	3783683	3783793	.	+	.	Parent=Os02t0169800-01
Chr02	irgsp1_rep	three_prime_UTR	3783871	3783960	.	+	.	Parent=Os02t0169800-01
Chr02	irgsp1_rep	three_prime_UTR	3784038	3784178	.	+	.	Parent=Os02t0169800-01
Chr02	irgsp1_rep	three_prime_UTR	3785924	3785995	.	+	.	Parent=Os02t0169800-01
Chr02	irgsp1_rep	three_prime_UTR	3788016	3788293	.	+	.	Parent=Os02t0169800-01
Chr02	irgsp1_rep	three_prime_UTR	3788432	3788665	.	+	.	Parent=Os02t0169800-01
Chr02	irgsp1_rep	three_prime_UTR	3789538	3789832	.	+	.	Parent=Os02t0169800-01
Chr02	irgsp1_rep	three_prime_UTR	3789966	3790105	.	+	.	Parent=Os02t0169800-01
Chr02	irgsp1_rep	three_prime_UTR	3790584	3790672	.	+	.	Parent=Os02t0169800-01
Chr02	irgsp1_rep	three_prime_UTR	3791509	3791798	.	+	.	Parent=Os02t0169800-01
Chr02	irgsp1_rep	mRNA	3792694	3796762	.	-	.	ID=Os02t0169900-01;Name=Os02t0169900-01;Locus_id=Os02g0169900;Oryzabase Gene Symbol Synonym(s)=OsIMP-2%2C IMP-2;Oryzabase Gene Name Synonym(s)=inositol monophosphatase 2;Note=Inositol monophosphatase family protein.;Transcript_evidence=AK105887 (DDBJ%2C Best hit),AK070107 (DDBJ%2C Best hit);ORF_evidence=NP_564376.1 (RefSeq);GO=Molecular Function: inositol or phosphatidylinositol phosphatase activity (GO:0004437);InterPro=Inositol monophosphatase (IPR000760),Inositol monophosphatase%2C conserved site (IPR020550),Inositol monophosphatase%2C metal-binding site (IPR020583);NIAS_FLcDNA=001-204-E03,J023047B05;Oryzabase=11890;Expression=AK105887;TENOR=Os02t0169900-01;KEGG=Os02t0169900-01 (EC:3.1.3.25)
Chr02	irgsp1_rep	five_prime_UTR	3796707	3796762	.	-	.	Parent=Os02t0169900-01
Chr02	irgsp1_rep	CDS	3796428	3796706	.	-	0	Parent=Os02t0169900-01
Chr02	irgsp1_rep	CDS	3795671	3795738	.	-	0	Parent=Os02t0169900-01
Chr02	irgsp1_rep	CDS	3795303	3795436	.	-	1	Parent=Os02t0169900-01
Chr02	irgsp1_rep	CDS	3794728	3794816	.	-	2	Parent=Os02t0169900-01
Chr02	irgsp1_rep	CDS	3794537	3794594	.	-	0	Parent=Os02t0169900-01
Chr02	irgsp1_rep	CDS	3794387	3794439	.	-	2	Parent=Os02t0169900-01
Chr02	irgsp1_rep	CDS	3794063	3794161	.	-	0	Parent=Os02t0169900-01
Chr02	irgsp1_rep	CDS	3793864	3793977	.	-	0	Parent=Os02t0169900-01
Chr02	irgsp1_rep	CDS	3793512	3793613	.	-	0	Parent=Os02t0169900-01
Chr02	irgsp1_rep	CDS	3792867	3792965	.	-	0	Parent=Os02t0169900-01
Chr02	irgsp1_rep	three_prime_UTR	3792694	3792866	.	-	.	Parent=Os02t0169900-01
Chr02	irgsp1_rep	mRNA	3792745	3796736	.	-	.	ID=Os02t0169900-02;Name=Os02t0169900-02;Locus_id=Os02g0169900;Oryzabase Gene Symbol Synonym(s)=OsIMP-2%2C IMP-2;Oryzabase Gene Name Synonym(s)=inositol monophosphatase 2;Note=Inositol monophosphatase family protein.;Transcript_evidence=AK099345 (DDBJ%2C Best hit);ORF_evidence=NP_564376.1 (RefSeq);GO=Molecular Function: inositol or phosphatidylinositol phosphatase activity (GO:0004437);InterPro=Inositol monophosphatase (IPR000760),Inositol monophosphatase%2C conserved site (IPR020550),Inositol monophosphatase%2C metal-binding site (IPR020583);NIAS_FLcDNA=J033027L13;Oryzabase=11890;TENOR=Os02t0169900-02
Chr02	irgsp1_rep	five_prime_UTR	3796707	3796736	.	-	.	Parent=Os02t0169900-02
Chr02	irgsp1_rep	CDS	3796428	3796706	.	-	0	Parent=Os02t0169900-02
Chr02	irgsp1_rep	CDS	3795671	3795738	.	-	0	Parent=Os02t0169900-02
Chr02	irgsp1_rep	CDS	3795303	3795436	.	-	1	Parent=Os02t0169900-02
Chr02	irgsp1_rep	CDS	3794728	3794816	.	-	2	Parent=Os02t0169900-02
Chr02	irgsp1_rep	CDS	3794537	3794594	.	-	0	Parent=Os02t0169900-02
Chr02	irgsp1_rep	CDS	3794387	3794439	.	-	2	Parent=Os02t0169900-02
Chr02	irgsp1_rep	CDS	3794063	3794161	.	-	0	Parent=Os02t0169900-02
Chr02	irgsp1_rep	CDS	3793864	3793977	.	-	0	Parent=Os02t0169900-02
Chr02	irgsp1_rep	CDS	3793512	3793613	.	-	0	Parent=Os02t0169900-02
Chr02	irgsp1_rep	CDS	3792867	3792965	.	-	0	Parent=Os02t0169900-02
Chr02	irgsp1_rep	three_prime_UTR	3792745	3792866	.	-	.	Parent=Os02t0169900-02
Chr02	irgsp1_rep	mRNA	3792745	3796699	.	-	.	ID=Os02t0169900-03;Name=Os02t0169900-03;Locus_id=Os02g0169900;Oryzabase Gene Symbol Synonym(s)=OsIMP-2%2C IMP-2;Oryzabase Gene Name Synonym(s)=inositol monophosphatase 2;Note=Similar to IMPL1 (MYO-INOSITOL MONOPHOSPHATASE LIKE 1)%3B 3'(2')%2C5'-bisphosphate nucleotidase/ inositol or phosphatidylinositol phosphatase/ inositol-1(or 4)-monophosphatase.;Transcript_evidence=AK103039 (DDBJ%2C Best hit);ORF_evidence=NP_564376.1 (RefSeq);GO=Molecular Function: inositol or phosphatidylinositol phosphatase activity (GO:0004437);InterPro=Inositol monophosphatase (IPR000760),Inositol monophosphatase%2C conserved site (IPR020550),Inositol monophosphatase%2C metal-binding site (IPR020583);NIAS_FLcDNA=J033117E17;Oryzabase=11890;TENOR=Os02t0169900-03
Chr02	irgsp1_rep	five_prime_UTR	3796698	3796699	.	-	.	Parent=Os02t0169900-03
Chr02	irgsp1_rep	CDS	3796428	3796697	.	-	0	Parent=Os02t0169900-03
Chr02	irgsp1_rep	CDS	3795671	3795738	.	-	0	Parent=Os02t0169900-03
Chr02	irgsp1_rep	CDS	3795303	3795436	.	-	1	Parent=Os02t0169900-03
Chr02	irgsp1_rep	CDS	3794728	3794816	.	-	2	Parent=Os02t0169900-03
Chr02	irgsp1_rep	CDS	3794537	3794594	.	-	0	Parent=Os02t0169900-03
Chr02	irgsp1_rep	CDS	3794387	3794439	.	-	2	Parent=Os02t0169900-03
Chr02	irgsp1_rep	CDS	3794063	3794161	.	-	0	Parent=Os02t0169900-03
Chr02	irgsp1_rep	CDS	3793864	3793977	.	-	0	Parent=Os02t0169900-03
Chr02	irgsp1_rep	CDS	3793512	3793613	.	-	0	Parent=Os02t0169900-03
Chr02	irgsp1_rep	CDS	3792867	3792965	.	-	0	Parent=Os02t0169900-03
Chr02	irgsp1_rep	three_prime_UTR	3792745	3792866	.	-	.	Parent=Os02t0169900-03
Chr02	irgsp1_rep	mRNA	3797629	3800883	.	+	.	ID=Os02t0170000-01;Name=Os02t0170000-01;Locus_id=Os02g0170000;Oryzabase Gene Symbol Synonym(s)=PPR;Oryzabase Gene Name Synonym(s)=Pentatricopeptide repeat (PPR) protein;Note=Conserved hypothetical protein.;Transcript_evidence=AK065022 (DDBJ%2C Best hit);ORF_evidence=A3A3K8 (UniProt);NIAS_FLcDNA=J013001G04;Oryzabase=22519;TENOR=Os02t0170000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	3797629	3797769	.	+	.	Parent=Os02t0170000-01
Chr02	irgsp1_rep	CDS	3797770	3797771	.	+	0	Parent=Os02t0170000-01
Chr02	irgsp1_rep	CDS	3798054	3798268	.	+	1	Parent=Os02t0170000-01
Chr02	irgsp1_rep	CDS	3798422	3798654	.	+	2	Parent=Os02t0170000-01
Chr02	irgsp1_rep	CDS	3798759	3798767	.	+	0	Parent=Os02t0170000-01
Chr02	irgsp1_rep	three_prime_UTR	3798768	3799017	.	+	.	Parent=Os02t0170000-01
Chr02	irgsp1_rep	three_prime_UTR	3799107	3799252	.	+	.	Parent=Os02t0170000-01
Chr02	irgsp1_rep	three_prime_UTR	3799375	3799580	.	+	.	Parent=Os02t0170000-01
Chr02	irgsp1_rep	three_prime_UTR	3799724	3799848	.	+	.	Parent=Os02t0170000-01
Chr02	irgsp1_rep	three_prime_UTR	3800157	3800883	.	+	.	Parent=Os02t0170000-01
Chr02	irgsp1_rep	mRNA	3798551	3800882	.	+	.	ID=Os02t0170000-02;Name=Os02t0170000-02;Locus_id=Os02g0170000;Oryzabase Gene Symbol Synonym(s)=PPR;Oryzabase Gene Name Synonym(s)=Pentatricopeptide repeat (PPR) protein;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK119658 (DDBJ%2C Best hit);ORF_evidence=A3A3K8 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-130-H09;Oryzabase=22519;TENOR=Os02t0170000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	3798551	3798552	.	+	.	Parent=Os02t0170000-02
Chr02	irgsp1_rep	CDS	3798553	3798654	.	+	0	Parent=Os02t0170000-02
Chr02	irgsp1_rep	CDS	3798768	3799017	.	+	0	Parent=Os02t0170000-02
Chr02	irgsp1_rep	CDS	3799107	3799252	.	+	2	Parent=Os02t0170000-02
Chr02	irgsp1_rep	CDS	3799375	3799580	.	+	0	Parent=Os02t0170000-02
Chr02	irgsp1_rep	CDS	3799724	3799848	.	+	1	Parent=Os02t0170000-02
Chr02	irgsp1_rep	CDS	3800157	3800737	.	+	2	Parent=Os02t0170000-02
Chr02	irgsp1_rep	three_prime_UTR	3800738	3800882	.	+	.	Parent=Os02t0170000-02
Chr02	irgsp1_rep	mRNA	3827878	3830121	.	+	.	ID=Os02t0170100-01;Name=Os02t0170100-01;Locus_id=Os02g0170100;Oryzabase Gene Name Synonym(s)=glycine decarboxylase complex H-protein;Note=Glycine cleavage H-protein family protein.;Transcript_evidence=AK058912 (DDBJ%2C Best hit);ORF_evidence=NP_001152670.1 (RefSeq);GO=Biological Process: glycine catabolic process (GO:0006546),Biological Process: glycine decarboxylation via glycine cleavage system (GO:0019464),Cellular Component: glycine cleavage complex (GO:0005960);InterPro=Glycine cleavage H-protein (IPR002930),2-oxo acid dehydrogenase%2C lipoyl-binding site (IPR003016),Single hybrid motif (IPR011053),Glycine cleavage H-protein%2C subgroup (IPR017453);NIAS_FLcDNA=001-008-H01;Oryzabase=16035;Expression=AK058912;TENOR=Os02t0170100-01;KEGG=Os02t0170100-01
Chr02	irgsp1_rep	five_prime_UTR	3827878	3828031	.	+	.	Parent=Os02t0170100-01
Chr02	irgsp1_rep	CDS	3828032	3828119	.	+	0	Parent=Os02t0170100-01
Chr02	irgsp1_rep	CDS	3829176	3829264	.	+	2	Parent=Os02t0170100-01
Chr02	irgsp1_rep	CDS	3829449	3829619	.	+	0	Parent=Os02t0170100-01
Chr02	irgsp1_rep	CDS	3829699	3829827	.	+	0	Parent=Os02t0170100-01
Chr02	irgsp1_rep	three_prime_UTR	3829828	3830121	.	+	.	Parent=Os02t0170100-01
Chr02	irgsp1_rep	mRNA	3827940	3830119	.	+	.	ID=Os02t0170100-02;Name=Os02t0170100-02;Locus_id=Os02g0170100;Oryzabase Gene Name Synonym(s)=glycine decarboxylase complex H-protein;Note=Glycine cleavage H-protein family protein.;Transcript_evidence=AK100893 (DDBJ%2C Best hit);ORF_evidence=NP_001152670.1 (RefSeq);GO=Biological Process: glycine catabolic process (GO:0006546),Biological Process: glycine decarboxylation via glycine cleavage system (GO:0019464),Cellular Component: glycine cleavage complex (GO:0005960);InterPro=Glycine cleavage H-protein (IPR002930),2-oxo acid dehydrogenase%2C lipoyl-binding site (IPR003016),Single hybrid motif (IPR011053),Glycine cleavage H-protein%2C subgroup (IPR017453);NIAS_FLcDNA=J023130P09;Oryzabase=16035;Expression=AK100893;TENOR=Os02t0170100-02;KEGG=Os02t0170100-02
Chr02	irgsp1_rep	five_prime_UTR	3827940	3828031	.	+	.	Parent=Os02t0170100-02
Chr02	irgsp1_rep	CDS	3828032	3828119	.	+	0	Parent=Os02t0170100-02
Chr02	irgsp1_rep	CDS	3829176	3829264	.	+	2	Parent=Os02t0170100-02
Chr02	irgsp1_rep	CDS	3829449	3829619	.	+	0	Parent=Os02t0170100-02
Chr02	irgsp1_rep	CDS	3829699	3829827	.	+	0	Parent=Os02t0170100-02
Chr02	irgsp1_rep	three_prime_UTR	3829828	3830119	.	+	.	Parent=Os02t0170100-02
Chr02	irgsp1_rep	mRNA	3829446	3829814	.	-	.	ID=Os02t0170150-00;Name=Os02t0170150-00;Locus_id=Os02g0170150;Note=Non-protein coding transcript.;Transcript_evidence=FP093512 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0170150-00
Chr02	irgsp1_rep	exon	3829446	3829814	.	-	.	Parent=Os02t0170150-00
Chr02	irgsp1_rep	mRNA	3830537	3832335	.	-	.	ID=Os02t0170200-01;Name=Os02t0170200-01;Locus_id=Os02g0170200;Note=Similar to splicing factor%2C arginine/serine-rich 12.;Transcript_evidence=AK107753 (DDBJ%2C Best hit);ORF_evidence=NP_001148365.1 (RefSeq);NIAS_FLcDNA=002-132-H11;Expression=AK107753;TENOR=Os02t0170200-01;KEGG=Os02t0170200-01
Chr02	irgsp1_rep	five_prime_UTR	3832260	3832335	.	-	.	Parent=Os02t0170200-01
Chr02	irgsp1_rep	CDS	3832211	3832259	.	-	0	Parent=Os02t0170200-01
Chr02	irgsp1_rep	CDS	3831961	3832107	.	-	2	Parent=Os02t0170200-01
Chr02	irgsp1_rep	CDS	3831687	3831751	.	-	2	Parent=Os02t0170200-01
Chr02	irgsp1_rep	CDS	3830708	3830935	.	-	0	Parent=Os02t0170200-01
Chr02	irgsp1_rep	three_prime_UTR	3830537	3830707	.	-	.	Parent=Os02t0170200-01
Chr02	irgsp1_rep	mRNA	3833130	3837135	.	-	.	ID=Os02t0170300-01;Name=Os02t0170300-01;Locus_id=Os02g0170300;RAP-DB Gene Symbol Synonym(s)=MADS29%2C OsMADS29;RAP-DB Gene Name Synonym(s)=MADS BOX GENE 29%2C MADS box gene29%2C MADS-box transcription factor 29;CGSNL Gene Symbol=FST;CGSNL Gene Name=FEMALE-STERILE;Oryzabase Gene Symbol Synonym(s)=OsMADS29%2C MADS29%2C OsFST;Oryzabase Gene Name Synonym(s)=MADS box gene29%2C MADS-box transcription factor 29;Note=MADS box transcription factor%2C Regulator of early seed development;Transcript_evidence=AK109522;ORF_evidence=Q6H711;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein dimerization activity (GO:0046983),Cellular Component: nucleus (GO:0005634);InterPro=Transcription factor%2C MADS-box (IPR002100),Transcription factor%2C K-box (IPR002487);NIAS_FLcDNA=002-115-F04;Manual Curation=September 10%2C 2014;Literature_PMID=22408076;Oryzabase=3094;TENOR=Os02t0170300-01;KEGG=Os02t0170300-01
Chr02	irgsp1_rep	five_prime_UTR	3837105	3837135	.	-	.	Parent=Os02t0170300-01
Chr02	irgsp1_rep	five_prime_UTR	3836710	3836786	.	-	.	Parent=Os02t0170300-01
Chr02	irgsp1_rep	CDS	3836522	3836709	.	-	0	Parent=Os02t0170300-01
Chr02	irgsp1_rep	CDS	3835196	3835265	.	-	1	Parent=Os02t0170300-01
Chr02	irgsp1_rep	CDS	3834897	3835058	.	-	0	Parent=Os02t0170300-01
Chr02	irgsp1_rep	CDS	3834355	3834396	.	-	0	Parent=Os02t0170300-01
Chr02	irgsp1_rep	CDS	3834205	3834246	.	-	0	Parent=Os02t0170300-01
Chr02	irgsp1_rep	CDS	3833799	3834077	.	-	0	Parent=Os02t0170300-01
Chr02	irgsp1_rep	three_prime_UTR	3833751	3833798	.	-	.	Parent=Os02t0170300-01
Chr02	irgsp1_rep	three_prime_UTR	3833130	3833515	.	-	.	Parent=Os02t0170300-01
Chr02	irgsp1_rep	mRNA	3846223	3850113	.	-	.	ID=Os02t0170500-01;Name=Os02t0170500-01;Locus_id=Os02g0170500;CGSNL Gene Symbol=HAP5A;CGSNL Gene Name=HAP5A SUBUNIT OF CCAAT-BOX BINDING COMPLEX;Oryzabase Gene Symbol Synonym(s)=OsHAP5A%2C NF-YC%2C CBF-C%2C OsNF-YC1%2C Os-NF-YC1%2C NF-YC1%2C NFYC1%2C OsNF-YC4-2%2C NF-YC4-2;Oryzabase Gene Name Synonym(s)=Nuclear factor Y C1 subunit%2C Nuclear factor Y C subunit 1%2C NUCLEAR FACTOR-Y subunit C1%2C NUCLEAR FACTOR-Y subunit NF-YC1%2C NF-YC subunit 1%2C NF-YC family 1;Note=Histone-fold domain containing protein.;Transcript_evidence=AK243429 (DDBJ%2C Best hit);ORF_evidence=C0PEA5 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Transcription factor CBF/NF-Y/archaeal histone (IPR003958),Histone-fold (IPR009072);NIAS_FLcDNA=J100067L16;Oryzabase=8491;TENOR=Os02t0170500-01;KEGG=Os02t0170500-01
Chr02	irgsp1_rep	five_prime_UTR	3849956	3850113	.	-	.	Parent=Os02t0170500-01
Chr02	irgsp1_rep	five_prime_UTR	3847272	3847302	.	-	.	Parent=Os02t0170500-01
Chr02	irgsp1_rep	CDS	3846492	3847271	.	-	0	Parent=Os02t0170500-01
Chr02	irgsp1_rep	three_prime_UTR	3846223	3846491	.	-	.	Parent=Os02t0170500-01
Chr02	irgsp1_rep	mRNA	3853232	3853795	.	-	.	ID=Os02t0170701-00;Name=Os02t0170701-00;Locus_id=Os02g0170701;Note=Conserved hypothetical protein.;Transcript_evidence=EU952806 (DDBJ);ORF_evidence=Q6H705 (UniProt);TENOR=Os02t0170701-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	3853277	3853795	.	-	0	Parent=Os02t0170701-00
Chr02	irgsp1_rep	three_prime_UTR	3853232	3853276	.	-	.	Parent=Os02t0170701-00
Chr02	irgsp1_rep	mRNA	3855966	3863872	.	-	.	ID=Os02t0170900-01;Name=Os02t0170900-01;Locus_id=Os02g0170900;Note=Conserved hypothetical protein.;Transcript_evidence=AK111491 (DDBJ%2C Best hit);ORF_evidence=B8AII8 (UniProt);NIAS_FLcDNA=J013000B05;TENOR=Os02t0170900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	3863871	3863872	.	-	.	Parent=Os02t0170900-01
Chr02	irgsp1_rep	CDS	3863671	3863870	.	-	0	Parent=Os02t0170900-01
Chr02	irgsp1_rep	CDS	3862491	3862515	.	-	1	Parent=Os02t0170900-01
Chr02	irgsp1_rep	three_prime_UTR	3862308	3862490	.	-	.	Parent=Os02t0170900-01
Chr02	irgsp1_rep	three_prime_UTR	3861723	3861773	.	-	.	Parent=Os02t0170900-01
Chr02	irgsp1_rep	three_prime_UTR	3861484	3861614	.	-	.	Parent=Os02t0170900-01
Chr02	irgsp1_rep	three_prime_UTR	3861277	3861393	.	-	.	Parent=Os02t0170900-01
Chr02	irgsp1_rep	three_prime_UTR	3861049	3861171	.	-	.	Parent=Os02t0170900-01
Chr02	irgsp1_rep	three_prime_UTR	3860325	3860383	.	-	.	Parent=Os02t0170900-01
Chr02	irgsp1_rep	three_prime_UTR	3859970	3860139	.	-	.	Parent=Os02t0170900-01
Chr02	irgsp1_rep	three_prime_UTR	3859432	3859485	.	-	.	Parent=Os02t0170900-01
Chr02	irgsp1_rep	three_prime_UTR	3858749	3858858	.	-	.	Parent=Os02t0170900-01
Chr02	irgsp1_rep	three_prime_UTR	3858199	3858312	.	-	.	Parent=Os02t0170900-01
Chr02	irgsp1_rep	three_prime_UTR	3857975	3858100	.	-	.	Parent=Os02t0170900-01
Chr02	irgsp1_rep	three_prime_UTR	3857644	3857711	.	-	.	Parent=Os02t0170900-01
Chr02	irgsp1_rep	three_prime_UTR	3855966	3856376	.	-	.	Parent=Os02t0170900-01
Chr02	irgsp1_rep	mRNA	3862225	3863867	.	-	.	ID=Os02t0170900-02;Name=Os02t0170900-02;Locus_id=Os02g0170900;Note=Hypothetical conserved gene.;Transcript_evidence=AK065636 (DDBJ%2C Best hit);ORF_evidence=B8AII8 (UniProt);NIAS_FLcDNA=J013031F12;Expression=AK065636;TENOR=Os02t0170900-02;KEGG=Os02t0170900-02
Chr02	irgsp1_rep	five_prime_UTR	3862491	3863867	.	-	.	Parent=Os02t0170900-02
Chr02	irgsp1_rep	CDS	3862290	3862490	.	-	0	Parent=Os02t0170900-02
Chr02	irgsp1_rep	three_prime_UTR	3862225	3862289	.	-	.	Parent=Os02t0170900-02
Chr02	irgsp1_rep	mRNA	3861702	3862553	.	+	.	ID=Os02t0171001-00;Name=Os02t0171001-00;Locus_id=Os02g0171001;Note=Non-protein coding transcript.;Transcript_evidence=BT062062 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0171001-00
Chr02	irgsp1_rep	exon	3861702	3862052	.	+	.	Parent=Os02t0171001-00
Chr02	irgsp1_rep	exon	3862227	3862553	.	+	.	Parent=Os02t0171001-00
Chr02	irgsp1_rep	mRNA	3868115	3872945	.	+	.	ID=Os02t0171100-01;Name=Os02t0171100-01;Locus_id=Os02g0171100;Note=Similar to Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) (GAPDH).;Transcript_evidence=AK070032 (DDBJ%2C Best hit);ORF_evidence=B6TDF8 (UniProt);GO=Biological Process: glucose metabolic process (GO:0006006),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620),Molecular Function: NADP binding (GO:0050661),Molecular Function: NAD binding (GO:0051287);InterPro=Glyceraldehyde-3-phosphate dehydrogenase%2C type I (IPR006424),NAD(P)-binding domain (IPR016040),Glyceraldehyde 3-phosphate dehydrogenase%2C NAD(P) binding domain (IPR020828),Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain (IPR020829),Glyceraldehyde 3-phosphate dehydrogenase%2C active site (IPR020830),Glyceraldehyde/Erythrose phosphate dehydrogenase family (IPR020831);NIAS_FLcDNA=J023036H06;Expression=AK070032;TENOR=Os02t0171100-01;KEGG=Os02t0171100-01 (EC:1.2.1.12)
Chr02	irgsp1_rep	five_prime_UTR	3868115	3868232	.	+	.	Parent=Os02t0171100-01
Chr02	irgsp1_rep	CDS	3868233	3868316	.	+	0	Parent=Os02t0171100-01
Chr02	irgsp1_rep	CDS	3868879	3868940	.	+	0	Parent=Os02t0171100-01
Chr02	irgsp1_rep	CDS	3869043	3869101	.	+	1	Parent=Os02t0171100-01
Chr02	irgsp1_rep	CDS	3869190	3869228	.	+	2	Parent=Os02t0171100-01
Chr02	irgsp1_rep	CDS	3869632	3869732	.	+	2	Parent=Os02t0171100-01
Chr02	irgsp1_rep	CDS	3870291	3870403	.	+	0	Parent=Os02t0171100-01
Chr02	irgsp1_rep	CDS	3870979	3871078	.	+	1	Parent=Os02t0171100-01
Chr02	irgsp1_rep	CDS	3871173	3871319	.	+	0	Parent=Os02t0171100-01
Chr02	irgsp1_rep	CDS	3871445	3871505	.	+	0	Parent=Os02t0171100-01
Chr02	irgsp1_rep	CDS	3871619	3871716	.	+	2	Parent=Os02t0171100-01
Chr02	irgsp1_rep	CDS	3871789	3871931	.	+	0	Parent=Os02t0171100-01
Chr02	irgsp1_rep	CDS	3872224	3872307	.	+	1	Parent=Os02t0171100-01
Chr02	irgsp1_rep	CDS	3872392	3872481	.	+	1	Parent=Os02t0171100-01
Chr02	irgsp1_rep	CDS	3872577	3872631	.	+	1	Parent=Os02t0171100-01
Chr02	irgsp1_rep	three_prime_UTR	3872632	3872945	.	+	.	Parent=Os02t0171100-01
Chr02	irgsp1_rep	mRNA	3871647	3872864	.	+	.	ID=Os02t0171100-02;Name=Os02t0171100-02;Locus_id=Os02g0171100;Note=Similar to glyceraldehyde-3-phosphate dehydrogenase%2C cytosolic.;Transcript_evidence=AK059005 (DDBJ%2C Best hit);ORF_evidence=B6TDF8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620);InterPro=Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain (IPR020829),Glyceraldehyde/Erythrose phosphate dehydrogenase family (IPR020831);NIAS_FLcDNA=001-020-H04;Expression=AK059005;TENOR=Os02t0171100-02;KEGG=Os02t0171100-02 (EC:1.2.1.12)
Chr02	irgsp1_rep	five_prime_UTR	3871647	3871647	.	+	.	Parent=Os02t0171100-02
Chr02	irgsp1_rep	CDS	3871648	3871716	.	+	0	Parent=Os02t0171100-02
Chr02	irgsp1_rep	CDS	3871789	3871931	.	+	0	Parent=Os02t0171100-02
Chr02	irgsp1_rep	CDS	3872224	3872307	.	+	1	Parent=Os02t0171100-02
Chr02	irgsp1_rep	CDS	3872392	3872481	.	+	1	Parent=Os02t0171100-02
Chr02	irgsp1_rep	CDS	3872577	3872631	.	+	1	Parent=Os02t0171100-02
Chr02	irgsp1_rep	three_prime_UTR	3872632	3872864	.	+	.	Parent=Os02t0171100-02
Chr02	irgsp1_rep	mRNA	3868227	3872798	.	-	.	ID=Os02t0171301-00;Name=Os02t0171301-00;Locus_id=Os02g0171301;Note=Hypothetical gene.;Transcript_evidence=BT016463 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0171301-00
Chr02	irgsp1_rep	five_prime_UTR	3872767	3872798	.	-	.	Parent=Os02t0171301-00
Chr02	irgsp1_rep	CDS	3872581	3872766	.	-	0	Parent=Os02t0171301-00
Chr02	irgsp1_rep	CDS	3872439	3872489	.	-	0	Parent=Os02t0171301-00
Chr02	irgsp1_rep	three_prime_UTR	3872372	3872438	.	-	.	Parent=Os02t0171301-00
Chr02	irgsp1_rep	three_prime_UTR	3872224	3872289	.	-	.	Parent=Os02t0171301-00
Chr02	irgsp1_rep	three_prime_UTR	3871787	3871931	.	-	.	Parent=Os02t0171301-00
Chr02	irgsp1_rep	three_prime_UTR	3871623	3871714	.	-	.	Parent=Os02t0171301-00
Chr02	irgsp1_rep	three_prime_UTR	3871443	3871510	.	-	.	Parent=Os02t0171301-00
Chr02	irgsp1_rep	three_prime_UTR	3871171	3871317	.	-	.	Parent=Os02t0171301-00
Chr02	irgsp1_rep	three_prime_UTR	3870977	3871076	.	-	.	Parent=Os02t0171301-00
Chr02	irgsp1_rep	three_prime_UTR	3870290	3870401	.	-	.	Parent=Os02t0171301-00
Chr02	irgsp1_rep	three_prime_UTR	3869618	3869731	.	-	.	Parent=Os02t0171301-00
Chr02	irgsp1_rep	three_prime_UTR	3869038	3869126	.	-	.	Parent=Os02t0171301-00
Chr02	irgsp1_rep	three_prime_UTR	3868886	3868954	.	-	.	Parent=Os02t0171301-00
Chr02	irgsp1_rep	three_prime_UTR	3868227	3868324	.	-	.	Parent=Os02t0171301-00
Chr02	irgsp1_rep	mRNA	3909560	3909841	.	+	.	ID=Os02t0171500-00;Name=Os02t0171500-00;Locus_id=Os02g0171500;Oryzabase Gene Symbol Synonym(s)=OsEnS-25%2C DEFL2%2C OsDEFL2%2C OsDf-02%2C Df-02;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 25%2C defensin-like 2;Note=Gamma thionin family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001172822.1 (RefSeq);GO=Biological Process: defense response (GO:0006952);InterPro=Knottin (IPR003614),Gamma thionin (IPR008176);Oryzabase=18362;TENOR=Os02t0171500-00;KEGG=Os02t0171500-00
Chr02	irgsp1_rep	CDS	3909560	3909841	.	+	0	Parent=Os02t0171500-00
Chr02	irgsp1_rep	mRNA	3926807	3927390	.	+	.	ID=Os02t0171700-01;Name=Os02t0171700-01;Locus_id=Os02g0171700;Note=Knottin domain containing protein.;Transcript_evidence=AK121438 (DDBJ%2C Best hit);ORF_evidence=longestORF;GO=Biological Process: defense response (GO:0006952);InterPro=Knottin (IPR003614);NIAS_FLcDNA=J023140H13;Expression=AK121438;TENOR=Os02t0171700-01;KEGG=Os02t0171700-01
Chr02	irgsp1_rep	five_prime_UTR	3926807	3926845	.	+	.	Parent=Os02t0171700-01
Chr02	irgsp1_rep	CDS	3926846	3926912	.	+	0	Parent=Os02t0171700-01
Chr02	irgsp1_rep	CDS	3927029	3927219	.	+	2	Parent=Os02t0171700-01
Chr02	irgsp1_rep	three_prime_UTR	3927220	3927390	.	+	.	Parent=Os02t0171700-01
Chr02	irgsp1_rep	mRNA	3929618	3933222	.	+	.	ID=Os02t0172000-00;Name=Os02t0172000-00;Locus_id=Os02g0172000;Note=Similar to Defensin protein 1.;Transcript_evidence=EU976657 (DDBJ);ORF_evidence=Q84UH1 (UniProt);GO=Biological Process: defense response (GO:0006952);InterPro=Knottin (IPR003614),Gamma thionin (IPR008176),Gamma Purothionin (IPR008177);TENOR=Os02t0172000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	3929618	3929751	.	+	.	Parent=Os02t0172000-00
Chr02	irgsp1_rep	CDS	3929752	3929757	.	+	0	Parent=Os02t0172000-00
Chr02	irgsp1_rep	CDS	3933025	3933222	.	+	0	Parent=Os02t0172000-00
Chr02	irgsp1_rep	mRNA	3946045	3946543	.	+	.	ID=Os02t0172300-00;Name=Os02t0172300-00;Locus_id=Os02g0172300;Oryzabase Gene Symbol Synonym(s)=DEFL4%2C OsDEFL4%2C OsDf-04%2C Df-04;Oryzabase Gene Name Synonym(s)=defensin-like 4;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001172823.1 (RefSeq);GO=Biological Process: defense response (GO:0006952);InterPro=Knottin (IPR003614),Gamma thionin (IPR008176);Oryzabase=21073;TENOR=Os02t0172300-00;KEGG=Os02t0172300-00
Chr02	irgsp1_rep	CDS	3946045	3946096	.	+	0	Parent=Os02t0172300-00
Chr02	irgsp1_rep	CDS	3946311	3946543	.	+	2	Parent=Os02t0172300-00
Chr02	irgsp1_rep	mRNA	3950459	3955971	.	-	.	ID=Os02t0172600-00;Name=Os02t0172600-00;Locus_id=Os02g0172600;CGSNL Gene Symbol=HMA6;CGSNL Gene Name=HEAVY METAL ATPASE 6;Oryzabase Gene Symbol Synonym(s)=OsHMA5%2C osHMA6%2C HMA5%2C OsHMP11%2C HMP11;Oryzabase Gene Name Synonym(s)=heavy metal ATPase 5%2C heavy metal ATPase 6%2C heavy metal P-Type ATPase 6%2C Heavy metal-associated protein 11;Note=Similar to heavy metal ATPase.;Transcript_evidence=AK334816 (DDBJ);ORF_evidence=Q6H6Z1 (UniProt);GO=Biological Process: ATP biosynthetic process (GO:0006754),Biological Process: cation transport (GO:0006812),Biological Process: copper ion transport (GO:0006825),Biological Process: metabolic process (GO:0008152),Biological Process: metal ion transport (GO:0030001),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: copper ion binding (GO:0005507),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662),Molecular Function: metal ion binding (GO:0046872);InterPro=ATPase%2C P-type%2C H+ transporting proton pump (IPR000695),ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),Haloacid dehalogenase-like hydrolase (IPR005834),Heavy metal-associated domain%2C HMA (IPR006121),Heavy metal-associated domain%2C copper ion-binding (IPR006122),ATPase%2C P-type%2C heavy metal translocating (IPR006416),ATPase%2C P-type%2C ATPase-associated domain (IPR008250),Heavy-metal-associated%2C conserved site (IPR017969),ATPase%2C P-type phosphorylation site (IPR018303),HAD-like domain (IPR023214),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C  P-type%2C cytoplasmic transduction domain A (IPR023300);Oryzabase=13008;TENOR=Os02t0172600-00;KEGG=Os02t0172600-00 (EC:3.6.3.4)
Chr02	irgsp1_rep	five_prime_UTR	3955900	3955971	.	-	.	Parent=Os02t0172600-00
Chr02	irgsp1_rep	CDS	3955603	3955899	.	-	0	Parent=Os02t0172600-00
Chr02	irgsp1_rep	CDS	3954183	3954797	.	-	0	Parent=Os02t0172600-00
Chr02	irgsp1_rep	CDS	3953286	3953715	.	-	0	Parent=Os02t0172600-00
Chr02	irgsp1_rep	CDS	3952760	3953085	.	-	2	Parent=Os02t0172600-00
Chr02	irgsp1_rep	CDS	3952289	3952347	.	-	0	Parent=Os02t0172600-00
Chr02	irgsp1_rep	CDS	3951864	3952206	.	-	1	Parent=Os02t0172600-00
Chr02	irgsp1_rep	CDS	3951557	3951757	.	-	0	Parent=Os02t0172600-00
Chr02	irgsp1_rep	CDS	3951177	3951434	.	-	0	Parent=Os02t0172600-00
Chr02	irgsp1_rep	CDS	3950588	3951064	.	-	0	Parent=Os02t0172600-00
Chr02	irgsp1_rep	three_prime_UTR	3950459	3950587	.	-	.	Parent=Os02t0172600-00
Chr02	irgsp1_rep	mRNA	3971431	3975146	.	+	.	ID=Os02t0172800-01;Name=Os02t0172800-01;Locus_id=Os02g0172800;Note=Similar to Zinc-binding protein.;Transcript_evidence=AK103838 (DDBJ%2C Best hit);ORF_evidence=NP_001150966.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C B-box (IPR000315),Protein of unknown function DUF597 (IPR006734);NIAS_FLcDNA=J033148H01;Expression=AK103838;TENOR=Os02t0172800-01;KEGG=Os02t0172800-01
Chr02	irgsp1_rep	five_prime_UTR	3971431	3971677	.	+	.	Parent=Os02t0172800-01
Chr02	irgsp1_rep	CDS	3971678	3971848	.	+	0	Parent=Os02t0172800-01
Chr02	irgsp1_rep	CDS	3973794	3973868	.	+	0	Parent=Os02t0172800-01
Chr02	irgsp1_rep	CDS	3974132	3974611	.	+	0	Parent=Os02t0172800-01
Chr02	irgsp1_rep	three_prime_UTR	3974612	3975146	.	+	.	Parent=Os02t0172800-01
Chr02	irgsp1_rep	mRNA	3977836	3978633	.	-	.	ID=Os02t0172850-01;Name=Os02t0172850-01;Locus_id=Os02g0172850;Note=Hypothetical conserved gene.;Transcript_evidence=AK241423 (DDBJ%2C Best hit);ORF_evidence=Q339F0 (UniProt);NIAS_FLcDNA=J065161K17;TENOR=Os02t0172850-01;KEGG=Os02t0172850-01
Chr02	irgsp1_rep	five_prime_UTR	3978242	3978633	.	-	.	Parent=Os02t0172850-01
Chr02	irgsp1_rep	CDS	3978137	3978241	.	-	0	Parent=Os02t0172850-01
Chr02	irgsp1_rep	three_prime_UTR	3977836	3978136	.	-	.	Parent=Os02t0172850-01
Chr02	irgsp1_rep	mRNA	3992043	3995076	.	-	.	ID=Os02t0173000-01;Name=Os02t0173000-01;Locus_id=Os02g0173000;Note=Similar to UreD.;Transcript_evidence=AK119397 (DDBJ%2C Best hit);ORF_evidence=E0ZS45 (UniProt);NIAS_FLcDNA=001-132-D10;TENOR=Os02t0173000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	3995016	3995076	.	-	.	Parent=Os02t0173000-01
Chr02	irgsp1_rep	CDS	3994875	3995015	.	-	0	Parent=Os02t0173000-01
Chr02	irgsp1_rep	CDS	3994494	3994781	.	-	0	Parent=Os02t0173000-01
Chr02	irgsp1_rep	three_prime_UTR	3993664	3994493	.	-	.	Parent=Os02t0173000-01
Chr02	irgsp1_rep	three_prime_UTR	3992592	3993555	.	-	.	Parent=Os02t0173000-01
Chr02	irgsp1_rep	three_prime_UTR	3992043	3992503	.	-	.	Parent=Os02t0173000-01
Chr02	irgsp1_rep	mRNA	3995980	4002624	.	+	.	ID=Os02t0173100-01;Name=Os02t0173100-01;Locus_id=Os02g0173100;CGSNL Gene Symbol=CYP97B4;CGSNL Gene Name=P-450 97B4;Oryzabase Gene Symbol Synonym(s)=CYP97B4%2C CYP97B4a;Oryzabase Gene Name Synonym(s)=CytoChrome P450 97B4;Note=Similar to cytoChrome P450.;Transcript_evidence=AK066680 (DDBJ%2C Best hit);ORF_evidence=XP_002308766.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);NIAS_FLcDNA=J013071M18;Oryzabase=12047;Expression=AK066680;TENOR=Os02t0173100-01;KEGG=Os02t0173100-01 (EC:1.14.13.30)
Chr02	irgsp1_rep	five_prime_UTR	3995980	3996462	.	+	.	Parent=Os02t0173100-01
Chr02	irgsp1_rep	CDS	3996463	3996648	.	+	0	Parent=Os02t0173100-01
Chr02	irgsp1_rep	CDS	3998064	3998171	.	+	0	Parent=Os02t0173100-01
Chr02	irgsp1_rep	CDS	3998792	3998797	.	+	0	Parent=Os02t0173100-01
Chr02	irgsp1_rep	three_prime_UTR	3998798	3999027	.	+	.	Parent=Os02t0173100-01
Chr02	irgsp1_rep	three_prime_UTR	3999253	3999426	.	+	.	Parent=Os02t0173100-01
Chr02	irgsp1_rep	three_prime_UTR	3999513	3999560	.	+	.	Parent=Os02t0173100-01
Chr02	irgsp1_rep	three_prime_UTR	3999662	3999721	.	+	.	Parent=Os02t0173100-01
Chr02	irgsp1_rep	three_prime_UTR	3999818	3999904	.	+	.	Parent=Os02t0173100-01
Chr02	irgsp1_rep	three_prime_UTR	4000010	4000098	.	+	.	Parent=Os02t0173100-01
Chr02	irgsp1_rep	three_prime_UTR	4000212	4000303	.	+	.	Parent=Os02t0173100-01
Chr02	irgsp1_rep	three_prime_UTR	4001113	4001174	.	+	.	Parent=Os02t0173100-01
Chr02	irgsp1_rep	three_prime_UTR	4001274	4001423	.	+	.	Parent=Os02t0173100-01
Chr02	irgsp1_rep	three_prime_UTR	4001510	4001749	.	+	.	Parent=Os02t0173100-01
Chr02	irgsp1_rep	three_prime_UTR	4002240	4002624	.	+	.	Parent=Os02t0173100-01
Chr02	irgsp1_rep	mRNA	3996161	4002659	.	+	.	ID=Os02t0173100-02;Name=Os02t0173100-02;Locus_id=Os02g0173100;CGSNL Gene Symbol=CYP97B4;CGSNL Gene Name=P-450 97B4;Oryzabase Gene Symbol Synonym(s)=CYP97B4%2C CYP97B4a;Oryzabase Gene Name Synonym(s)=CytoChrome P450 97B4;Note=Similar to cytoChrome P450.;Transcript_evidence=AK240730 (DDBJ%2C Best hit);ORF_evidence=XP_002308766.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J043030K09;Oryzabase=12047;TENOR=Os02t0173100-02;KEGG=Os02t0173100-02
Chr02	irgsp1_rep	five_prime_UTR	3996161	3996184	.	+	.	Parent=Os02t0173100-02
Chr02	irgsp1_rep	CDS	3996185	3996309	.	+	0	Parent=Os02t0173100-02
Chr02	irgsp1_rep	CDS	3996465	3996648	.	+	1	Parent=Os02t0173100-02
Chr02	irgsp1_rep	CDS	3998064	3998171	.	+	0	Parent=Os02t0173100-02
Chr02	irgsp1_rep	CDS	3998412	3998496	.	+	0	Parent=Os02t0173100-02
Chr02	irgsp1_rep	CDS	3998792	3999027	.	+	2	Parent=Os02t0173100-02
Chr02	irgsp1_rep	CDS	3999253	3999426	.	+	0	Parent=Os02t0173100-02
Chr02	irgsp1_rep	CDS	3999513	3999560	.	+	0	Parent=Os02t0173100-02
Chr02	irgsp1_rep	CDS	3999662	3999721	.	+	0	Parent=Os02t0173100-02
Chr02	irgsp1_rep	CDS	3999818	3999904	.	+	0	Parent=Os02t0173100-02
Chr02	irgsp1_rep	CDS	4000010	4000098	.	+	0	Parent=Os02t0173100-02
Chr02	irgsp1_rep	CDS	4000212	4000303	.	+	1	Parent=Os02t0173100-02
Chr02	irgsp1_rep	CDS	4001113	4001174	.	+	2	Parent=Os02t0173100-02
Chr02	irgsp1_rep	CDS	4001274	4001423	.	+	0	Parent=Os02t0173100-02
Chr02	irgsp1_rep	CDS	4001510	4001725	.	+	0	Parent=Os02t0173100-02
Chr02	irgsp1_rep	three_prime_UTR	4001726	4001749	.	+	.	Parent=Os02t0173100-02
Chr02	irgsp1_rep	three_prime_UTR	4002240	4002659	.	+	.	Parent=Os02t0173100-02
Chr02	irgsp1_rep	mRNA	3996431	4002659	.	+	.	ID=Os02t0173100-03;Name=Os02t0173100-03;Locus_id=Os02g0173100;CGSNL Gene Symbol=CYP97B4;CGSNL Gene Name=P-450 97B4;Oryzabase Gene Symbol Synonym(s)=CYP97B4%2C CYP97B4a;Oryzabase Gene Name Synonym(s)=CytoChrome P450 97B4;Note=Similar to CytoChrome P450 97B3 (EC 1.14.-.-).;Transcript_evidence=AK100596 (DDBJ%2C Best hit);ORF_evidence=XP_002308766.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);NIAS_FLcDNA=J023106P10;Oryzabase=12047;Expression=AK100596;TENOR=Os02t0173100-03;KEGG=Os02t0173100-03
Chr02	irgsp1_rep	five_prime_UTR	3996431	3996462	.	+	.	Parent=Os02t0173100-03
Chr02	irgsp1_rep	CDS	3996463	3996648	.	+	0	Parent=Os02t0173100-03
Chr02	irgsp1_rep	CDS	3998064	3998171	.	+	0	Parent=Os02t0173100-03
Chr02	irgsp1_rep	CDS	3998412	3998496	.	+	0	Parent=Os02t0173100-03
Chr02	irgsp1_rep	CDS	3998792	3999027	.	+	2	Parent=Os02t0173100-03
Chr02	irgsp1_rep	CDS	3999253	3999426	.	+	0	Parent=Os02t0173100-03
Chr02	irgsp1_rep	CDS	3999513	3999560	.	+	0	Parent=Os02t0173100-03
Chr02	irgsp1_rep	CDS	3999638	3999661	.	+	0	Parent=Os02t0173100-03
Chr02	irgsp1_rep	three_prime_UTR	3999662	3999721	.	+	.	Parent=Os02t0173100-03
Chr02	irgsp1_rep	three_prime_UTR	3999818	3999904	.	+	.	Parent=Os02t0173100-03
Chr02	irgsp1_rep	three_prime_UTR	4000010	4000098	.	+	.	Parent=Os02t0173100-03
Chr02	irgsp1_rep	three_prime_UTR	4000212	4000303	.	+	.	Parent=Os02t0173100-03
Chr02	irgsp1_rep	three_prime_UTR	4001113	4001174	.	+	.	Parent=Os02t0173100-03
Chr02	irgsp1_rep	three_prime_UTR	4001274	4001423	.	+	.	Parent=Os02t0173100-03
Chr02	irgsp1_rep	three_prime_UTR	4001510	4001749	.	+	.	Parent=Os02t0173100-03
Chr02	irgsp1_rep	three_prime_UTR	4002240	4002659	.	+	.	Parent=Os02t0173100-03
Chr02	irgsp1_rep	mRNA	3998988	4002696	.	+	.	ID=Os02t0173100-04;Name=Os02t0173100-04;Locus_id=Os02g0173100;CGSNL Gene Symbol=CYP97B4;CGSNL Gene Name=P-450 97B4;Oryzabase Gene Symbol Synonym(s)=CYP97B4%2C CYP97B4a;Oryzabase Gene Name Synonym(s)=CytoChrome P450 97B4;Note=Similar to cDNA clone:J013071M18%2C full insert sequence.;Transcript_evidence=AK062235 (DDBJ%2C Best hit);ORF_evidence=B7ECI4 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=001-047-D12;Oryzabase=12047;Expression=AK062235;TENOR=Os02t0173100-04;KEGG=Os02t0173100-04
Chr02	irgsp1_rep	five_prime_UTR	3998988	3998988	.	+	.	Parent=Os02t0173100-04
Chr02	irgsp1_rep	CDS	3998989	3999027	.	+	0	Parent=Os02t0173100-04
Chr02	irgsp1_rep	CDS	3999253	3999426	.	+	0	Parent=Os02t0173100-04
Chr02	irgsp1_rep	CDS	3999513	3999560	.	+	0	Parent=Os02t0173100-04
Chr02	irgsp1_rep	CDS	3999662	3999721	.	+	0	Parent=Os02t0173100-04
Chr02	irgsp1_rep	CDS	3999818	3999904	.	+	0	Parent=Os02t0173100-04
Chr02	irgsp1_rep	CDS	4000010	4000098	.	+	0	Parent=Os02t0173100-04
Chr02	irgsp1_rep	CDS	4000212	4000303	.	+	1	Parent=Os02t0173100-04
Chr02	irgsp1_rep	CDS	4001113	4001174	.	+	2	Parent=Os02t0173100-04
Chr02	irgsp1_rep	CDS	4001274	4001423	.	+	0	Parent=Os02t0173100-04
Chr02	irgsp1_rep	CDS	4001510	4001725	.	+	0	Parent=Os02t0173100-04
Chr02	irgsp1_rep	three_prime_UTR	4001726	4001749	.	+	.	Parent=Os02t0173100-04
Chr02	irgsp1_rep	three_prime_UTR	4002240	4002696	.	+	.	Parent=Os02t0173100-04
Chr02	irgsp1_rep	mRNA	4008991	4010136	.	+	.	ID=Os02t0173200-01;Name=Os02t0173200-01;Locus_id=Os02g0173200;Oryzabase Gene Symbol Synonym(s)=OsVQ5;Oryzabase Gene Name Synonym(s)=VQ motif-containing protein 5;Note=VQ domain containing protein.;Transcript_evidence=AK068418 (DDBJ%2C Best hit);ORF_evidence=NP_001147304.1 (RefSeq);InterPro=VQ (IPR008889);NIAS_FLcDNA=J013152N05;Oryzabase=13621;Expression=AK068418;TENOR=Os02t0173200-01;KEGG=Os02t0173200-01
Chr02	irgsp1_rep	five_prime_UTR	4008991	4009008	.	+	.	Parent=Os02t0173200-01
Chr02	irgsp1_rep	CDS	4009009	4009698	.	+	0	Parent=Os02t0173200-01
Chr02	irgsp1_rep	three_prime_UTR	4009699	4010136	.	+	.	Parent=Os02t0173200-01
Chr02	irgsp1_rep	mRNA	4014563	4015313	.	+	.	ID=Os02t0173300-01;Name=Os02t0173300-01;Locus_id=Os02g0173300;Note=Conserved hypothetical protein.;Transcript_evidence=AK107829 (DDBJ%2C Best hit);ORF_evidence=B9F3B1 (UniProt);NIAS_FLcDNA=002-133-G10;Expression=AK107829;TENOR=Os02t0173300-01;KEGG=Os02t0173300-01
Chr02	irgsp1_rep	five_prime_UTR	4014563	4014944	.	+	.	Parent=Os02t0173300-01
Chr02	irgsp1_rep	CDS	4014945	4015277	.	+	0	Parent=Os02t0173300-01
Chr02	irgsp1_rep	three_prime_UTR	4015278	4015313	.	+	.	Parent=Os02t0173300-01
Chr02	irgsp1_rep	mRNA	4014845	4015186	.	-	.	ID=Os02t0173401-00;Name=Os02t0173401-00;Locus_id=Os02g0173401;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A2ZQ01 (UniProt);TENOR=Os02t0173401-00;KEGG=Os02t0173401-00
Chr02	irgsp1_rep	CDS	4014845	4015186	.	-	0	Parent=Os02t0173401-00
Chr02	irgsp1_rep	mRNA	4024691	4028669	.	+	.	ID=Os02t0173500-01;Name=Os02t0173500-01;Locus_id=Os02g0173500;Note=Similar to Cholinephosphate cytidylyltransferase.;Transcript_evidence=AK070565 (DDBJ%2C Best hit);ORF_evidence=B4F7T8 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=Cytidylyltransferase (IPR004820),Cytidyltransferase-related (IPR004821),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J023056M07;Expression=AK070565;TENOR=Os02t0173500-01;KEGG=Os02t0173500-01 (EC:2.7.7.15)
Chr02	irgsp1_rep	five_prime_UTR	4024691	4024795	.	+	.	Parent=Os02t0173500-01
Chr02	irgsp1_rep	CDS	4024796	4025028	.	+	0	Parent=Os02t0173500-01
Chr02	irgsp1_rep	CDS	4026262	4026375	.	+	1	Parent=Os02t0173500-01
Chr02	irgsp1_rep	CDS	4026485	4026580	.	+	1	Parent=Os02t0173500-01
Chr02	irgsp1_rep	CDS	4026783	4026825	.	+	1	Parent=Os02t0173500-01
Chr02	irgsp1_rep	CDS	4026961	4027114	.	+	0	Parent=Os02t0173500-01
Chr02	irgsp1_rep	CDS	4027236	4027318	.	+	2	Parent=Os02t0173500-01
Chr02	irgsp1_rep	CDS	4028035	4028133	.	+	0	Parent=Os02t0173500-01
Chr02	irgsp1_rep	CDS	4028228	4028353	.	+	0	Parent=Os02t0173500-01
Chr02	irgsp1_rep	three_prime_UTR	4028354	4028669	.	+	.	Parent=Os02t0173500-01
Chr02	irgsp1_rep	mRNA	4030968	4032592	.	+	.	ID=Os02t0173600-01;Name=Os02t0173600-01;Locus_id=Os02g0173600;Oryzabase Gene Name Synonym(s)=Dreg-2 like protein/haloacid dehalogenase-like hydrolase domain-containing protein 3;Note=Similar to Dreg-2 like protein.;Transcript_evidence=AK121841 (DDBJ%2C Best hit);ORF_evidence=NP_199286.1 (RefSeq);NIAS_FLcDNA=J033101D04;Oryzabase=23030;Expression=AK121841;TENOR=Os02t0173600-01;KEGG=Os02t0173600-01
Chr02	irgsp1_rep	five_prime_UTR	4030968	4032163	.	+	.	Parent=Os02t0173600-01
Chr02	irgsp1_rep	CDS	4032164	4032454	.	+	0	Parent=Os02t0173600-01
Chr02	irgsp1_rep	three_prime_UTR	4032455	4032592	.	+	.	Parent=Os02t0173600-01
Chr02	irgsp1_rep	mRNA	4033225	4033494	.	-	.	ID=Os02t0173650-00;Name=Os02t0173650-00;Locus_id=Os02g0173650;Note=Hypothetical protein.;Transcript_evidence=BT019318 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0173650-00
Chr02	irgsp1_rep	CDS	4033225	4033494	.	-	0	Parent=Os02t0173650-00
Chr02	irgsp1_rep	mRNA	4035328	4038406	.	+	.	ID=Os02t0173700-01;Name=Os02t0173700-01;Locus_id=Os02g0173700;Note=Similar to RNA binding.;Transcript_evidence=AK060232 (DDBJ%2C Best hit);ORF_evidence=NP_974023.1 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=S-adenosylmethionine-dependent methyltransferase (IPR019614);NIAS_FLcDNA=001-003-A05;TENOR=Os02t0173700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	4035328	4035434	.	+	0	Parent=Os02t0173700-01
Chr02	irgsp1_rep	CDS	4035520	4035654	.	+	1	Parent=Os02t0173700-01
Chr02	irgsp1_rep	CDS	4035862	4036084	.	+	1	Parent=Os02t0173700-01
Chr02	irgsp1_rep	CDS	4036285	4036471	.	+	0	Parent=Os02t0173700-01
Chr02	irgsp1_rep	CDS	4036630	4036814	.	+	2	Parent=Os02t0173700-01
Chr02	irgsp1_rep	CDS	4037438	4037575	.	+	0	Parent=Os02t0173700-01
Chr02	irgsp1_rep	CDS	4037998	4038126	.	+	0	Parent=Os02t0173700-01
Chr02	irgsp1_rep	three_prime_UTR	4038127	4038406	.	+	.	Parent=Os02t0173700-01
Chr02	irgsp1_rep	mRNA	4038445	4042357	.	-	.	ID=Os02t0173800-01;Name=Os02t0173800-01;Locus_id=Os02g0173800;Note=Protein of unknown function DUF284%2C transmembrane eukaryotic family protein.;Transcript_evidence=AK069063 (DDBJ%2C Best hit);ORF_evidence=B6TU52 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Protein of unknown function DUF284%2C transmembrane eukaryotic (IPR005045);NIAS_FLcDNA=J023007B15;Expression=AK069063;TENOR=Os02t0173800-01;KEGG=Os02t0173800-01
Chr02	irgsp1_rep	five_prime_UTR	4041962	4042357	.	-	.	Parent=Os02t0173800-01
Chr02	irgsp1_rep	CDS	4041871	4041961	.	-	0	Parent=Os02t0173800-01
Chr02	irgsp1_rep	CDS	4041350	4041408	.	-	2	Parent=Os02t0173800-01
Chr02	irgsp1_rep	CDS	4041169	4041243	.	-	0	Parent=Os02t0173800-01
Chr02	irgsp1_rep	CDS	4040969	4041082	.	-	0	Parent=Os02t0173800-01
Chr02	irgsp1_rep	CDS	4040782	4040852	.	-	0	Parent=Os02t0173800-01
Chr02	irgsp1_rep	CDS	4039676	4039973	.	-	1	Parent=Os02t0173800-01
Chr02	irgsp1_rep	CDS	4039228	4039517	.	-	0	Parent=Os02t0173800-01
Chr02	irgsp1_rep	CDS	4038702	4038756	.	-	1	Parent=Os02t0173800-01
Chr02	irgsp1_rep	three_prime_UTR	4038445	4038701	.	-	.	Parent=Os02t0173800-01
Chr02	irgsp1_rep	mRNA	4044609	4052188	.	+	.	ID=Os02t0173900-01;Name=Os02t0173900-01;Locus_id=Os02g0173900;CGSNL Gene Symbol=ALDH5F1;CGSNL Gene Name=ALDEHYDE DEHYDROGENASE 5F1;Oryzabase Gene Symbol Synonym(s)=OsALDH5F1%2C SSADH;Oryzabase Gene Name Synonym(s)=succinic semialdehyde dehydrogenase%2C aldehyde dehydrogenase 5F1;Note=Similar to SSADH.;Transcript_evidence=AK060831 (DDBJ%2C Best hit);ORF_evidence=XP_001752876.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldehyde dehydrogenase domain (IPR015590),Aldehyde/histidinol dehydrogenase (IPR016161),Aldehyde dehydrogenase%2C N-terminal (IPR016162);NIAS_FLcDNA=001-034-C05;Oryzabase=20165;TENOR=Os02t0173900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	4044609	4044685	.	+	.	Parent=Os02t0173900-01
Chr02	irgsp1_rep	CDS	4044686	4044787	.	+	0	Parent=Os02t0173900-01
Chr02	irgsp1_rep	CDS	4044865	4044978	.	+	0	Parent=Os02t0173900-01
Chr02	irgsp1_rep	CDS	4045821	4045920	.	+	0	Parent=Os02t0173900-01
Chr02	irgsp1_rep	CDS	4046926	4046974	.	+	2	Parent=Os02t0173900-01
Chr02	irgsp1_rep	CDS	4047074	4047161	.	+	1	Parent=Os02t0173900-01
Chr02	irgsp1_rep	CDS	4047254	4047364	.	+	0	Parent=Os02t0173900-01
Chr02	irgsp1_rep	CDS	4047774	4047836	.	+	0	Parent=Os02t0173900-01
Chr02	irgsp1_rep	CDS	4047945	4048055	.	+	0	Parent=Os02t0173900-01
Chr02	irgsp1_rep	CDS	4048520	4048585	.	+	0	Parent=Os02t0173900-01
Chr02	irgsp1_rep	CDS	4048692	4048769	.	+	0	Parent=Os02t0173900-01
Chr02	irgsp1_rep	CDS	4049933	4049983	.	+	0	Parent=Os02t0173900-01
Chr02	irgsp1_rep	three_prime_UTR	4049984	4050018	.	+	.	Parent=Os02t0173900-01
Chr02	irgsp1_rep	three_prime_UTR	4050304	4050336	.	+	.	Parent=Os02t0173900-01
Chr02	irgsp1_rep	three_prime_UTR	4050429	4050461	.	+	.	Parent=Os02t0173900-01
Chr02	irgsp1_rep	three_prime_UTR	4050757	4050857	.	+	.	Parent=Os02t0173900-01
Chr02	irgsp1_rep	three_prime_UTR	4050989	4051074	.	+	.	Parent=Os02t0173900-01
Chr02	irgsp1_rep	three_prime_UTR	4051481	4051587	.	+	.	Parent=Os02t0173900-01
Chr02	irgsp1_rep	three_prime_UTR	4051686	4051763	.	+	.	Parent=Os02t0173900-01
Chr02	irgsp1_rep	three_prime_UTR	4051857	4052188	.	+	.	Parent=Os02t0173900-01
Chr02	irgsp1_rep	mRNA	4058194	4060315	.	-	.	ID=Os02t0174000-00;Name=Os02t0174000-00;Locus_id=Os02g0174000;Note=Myb-like DNA-binding domain%2C SHAQKYF class domain containing protein.;Transcript_evidence=AK370962 (DDBJ);ORF_evidence=NP_001046045.2 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);TENOR=Os02t0174000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	4060111	4060315	.	-	0	Parent=Os02t0174000-00
Chr02	irgsp1_rep	CDS	4059932	4060008	.	-	2	Parent=Os02t0174000-00
Chr02	irgsp1_rep	CDS	4058194	4058859	.	-	0	Parent=Os02t0174000-00
Chr02	irgsp1_rep	mRNA	4073883	4077949	.	+	.	ID=Os02t0174100-01;Name=Os02t0174100-01;Locus_id=Os02g0174100;CGSNL Gene Symbol=SPL4;CGSNL Gene Name=RICE SQUAMOSA PROMOTER-BINDING-LIKE 4;Oryzabase Gene Symbol Synonym(s)=OsSPL4;Oryzabase Gene Name Synonym(s)=Squamosa promoter-binding-like protein 4;Note=Similar to Isoform 2 of Squamosa promoter-binding-like protein 4.;Transcript_evidence=AK068702 (DDBJ%2C Best hit),AK061484 (DDBJ%2C Best hit);ORF_evidence=Q6H509-2 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Transcription factor%2C SBP-box (IPR004333);NIAS_FLcDNA=J013159I15,006-308-H09;Oryzabase=6889;TENOR=Os02t0174100-01
Chr02	irgsp1_rep	five_prime_UTR	4073883	4074003	.	+	.	Parent=Os02t0174100-01
Chr02	irgsp1_rep	CDS	4074004	4074344	.	+	0	Parent=Os02t0174100-01
Chr02	irgsp1_rep	CDS	4075121	4075260	.	+	1	Parent=Os02t0174100-01
Chr02	irgsp1_rep	CDS	4075650	4075873	.	+	2	Parent=Os02t0174100-01
Chr02	irgsp1_rep	three_prime_UTR	4075874	4077949	.	+	.	Parent=Os02t0174100-01
Chr02	irgsp1_rep	mRNA	4073890	4077831	.	+	.	ID=Os02t0174100-02;Name=Os02t0174100-02;Locus_id=Os02g0174100;CGSNL Gene Symbol=SPL4;CGSNL Gene Name=RICE SQUAMOSA PROMOTER-BINDING-LIKE 4;Oryzabase Gene Symbol Synonym(s)=OsSPL4;Oryzabase Gene Name Synonym(s)=Squamosa promoter-binding-like protein 4;Note=SBP domain containing protein.;Transcript_evidence=AK066057 (DDBJ%2C Best hit);ORF_evidence=Q6H509 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Transcription factor%2C SBP-box (IPR004333);NIAS_FLcDNA=J013053E16;Oryzabase=6889;Expression=AK066057;TENOR=Os02t0174100-02;KEGG=Os02t0174100-02
Chr02	irgsp1_rep	five_prime_UTR	4073890	4074003	.	+	.	Parent=Os02t0174100-02
Chr02	irgsp1_rep	CDS	4074004	4074344	.	+	0	Parent=Os02t0174100-02
Chr02	irgsp1_rep	CDS	4075121	4075260	.	+	1	Parent=Os02t0174100-02
Chr02	irgsp1_rep	CDS	4075650	4075841	.	+	2	Parent=Os02t0174100-02
Chr02	irgsp1_rep	CDS	4077076	4077158	.	+	2	Parent=Os02t0174100-02
Chr02	irgsp1_rep	three_prime_UTR	4077159	4077831	.	+	.	Parent=Os02t0174100-02
Chr02	irgsp1_rep	mRNA	4073926	4074397	.	+	.	ID=Os02t0174100-03;Name=Os02t0174100-03;Locus_id=Os02g0174100;CGSNL Gene Symbol=SPL4;CGSNL Gene Name=RICE SQUAMOSA PROMOTER-BINDING-LIKE 4;Oryzabase Gene Symbol Synonym(s)=OsSPL4;Oryzabase Gene Name Synonym(s)=Squamosa promoter-binding-like protein 4;Note=Similar to Isoform 2 of Squamosa promoter-binding-like protein 4.;Transcript_evidence=AK062651 (DDBJ%2C Best hit);ORF_evidence=B7EBQ0 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Transcription factor%2C SBP-box (IPR004333);NIAS_FLcDNA=001-105-E07;Oryzabase=6889;Expression=AK062651;TENOR=Os02t0174100-03;KEGG=Os02t0174100-03
Chr02	irgsp1_rep	five_prime_UTR	4073926	4074003	.	+	.	Parent=Os02t0174100-03
Chr02	irgsp1_rep	CDS	4074004	4074348	.	+	0	Parent=Os02t0174100-03
Chr02	irgsp1_rep	three_prime_UTR	4074349	4074397	.	+	.	Parent=Os02t0174100-03
Chr02	irgsp1_rep	mRNA	4078521	4081527	.	-	.	ID=Os02t0174200-01;Name=Os02t0174200-01;Locus_id=Os02g0174200;Oryzabase Gene Symbol Synonym(s)=OsDPK2%2C stk;Oryzabase Gene Name Synonym(s)=dual-specificity protein kinase 2%2C kinase-related transforming protein;Note=ATMRK serine/threonine protein kinase-like domain containing protein.;Transcript_evidence=AK101327 (DDBJ%2C Best hit);ORF_evidence=A9RAA9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033034G09;Oryzabase=14413;Expression=AK101327;TENOR=Os02t0174200-01;KEGG=Os02t0174200-01
Chr02	irgsp1_rep	five_prime_UTR	4081310	4081527	.	-	.	Parent=Os02t0174200-01
Chr02	irgsp1_rep	five_prime_UTR	4080775	4080869	.	-	.	Parent=Os02t0174200-01
Chr02	irgsp1_rep	CDS	4079849	4080774	.	-	0	Parent=Os02t0174200-01
Chr02	irgsp1_rep	CDS	4078795	4079134	.	-	1	Parent=Os02t0174200-01
Chr02	irgsp1_rep	three_prime_UTR	4078521	4078794	.	-	.	Parent=Os02t0174200-01
Chr02	irgsp1_rep	mRNA	4078718	4080739	.	+	.	ID=Os02t0174250-00;Name=Os02t0174250-00;Locus_id=Os02g0174250;Note=Hypothetical protein.;Transcript_evidence=tplb0062i19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0174250-00
Chr02	irgsp1_rep	five_prime_UTR	4078718	4079118	.	+	.	Parent=Os02t0174250-00
Chr02	irgsp1_rep	five_prime_UTR	4079832	4080124	.	+	.	Parent=Os02t0174250-00
Chr02	irgsp1_rep	CDS	4080125	4080388	.	+	0	Parent=Os02t0174250-00
Chr02	irgsp1_rep	three_prime_UTR	4080389	4080739	.	+	.	Parent=Os02t0174250-00
Chr02	irgsp1_rep	mRNA	4083023	4085633	.	+	.	ID=Os02t0174300-00;Name=Os02t0174300-00;Locus_id=Os02g0174300;CGSNL Gene Symbol=MSL09;CGSNL Gene Name=MYB/SANT-LIKE 9;Oryzabase Gene Symbol Synonym(s)=OsMSL09%2C MSL9;Oryzabase Gene Name Synonym(s)=Myb/SANT-LIKE 9;Note=Hypothetical conserved gene.;Transcript_evidence=AK355385 (DDBJ);ORF_evidence=NP_001046048.2 (RefSeq);InterPro=MYB-like (IPR017877);Oryzabase=22951;TENOR=Os02t0174300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	4083023	4083857	.	+	0	Parent=Os02t0174300-00
Chr02	irgsp1_rep	CDS	4085176	4085459	.	+	2	Parent=Os02t0174300-00
Chr02	irgsp1_rep	three_prime_UTR	4085460	4085633	.	+	.	Parent=Os02t0174300-00
Chr02	irgsp1_rep	mRNA	4086325	4089165	.	+	.	ID=Os02t0174400-00;Name=Os02t0174400-00;Locus_id=Os02g0174400;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK374658 (DDBJ);ORF_evidence=Q6H504 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os02t0174400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	4086325	4087186	.	+	0	Parent=Os02t0174400-00
Chr02	irgsp1_rep	CDS	4087260	4088028	.	+	2	Parent=Os02t0174400-00
Chr02	irgsp1_rep	CDS	4088538	4089165	.	+	1	Parent=Os02t0174400-00
Chr02	irgsp1_rep	mRNA	4090195	4093418	.	+	.	ID=Os02t0174500-01;Name=Os02t0174500-01;Locus_id=Os02g0174500;Note=Hypothetical gene.;Transcript_evidence=AK119374 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-132-A05;Expression=AK119374;TENOR=Os02t0174500-01;KEGG=Os02t0174500-01
Chr02	irgsp1_rep	five_prime_UTR	4090195	4091024	.	+	.	Parent=Os02t0174500-01
Chr02	irgsp1_rep	five_prime_UTR	4091252	4091733	.	+	.	Parent=Os02t0174500-01
Chr02	irgsp1_rep	CDS	4091734	4091964	.	+	0	Parent=Os02t0174500-01
Chr02	irgsp1_rep	three_prime_UTR	4091965	4093418	.	+	.	Parent=Os02t0174500-01
Chr02	irgsp1_rep	mRNA	4095629	4099533	.	-	.	ID=Os02t0174700-01;Name=Os02t0174700-01;Locus_id=Os02g0174700;Note=Hypothetical protein.;Transcript_evidence=AK106641 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-113-E05;TENOR=Os02t0174700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	4099070	4099533	.	-	.	Parent=Os02t0174700-01
Chr02	irgsp1_rep	CDS	4098975	4099069	.	-	0	Parent=Os02t0174700-01
Chr02	irgsp1_rep	CDS	4097536	4097701	.	-	1	Parent=Os02t0174700-01
Chr02	irgsp1_rep	three_prime_UTR	4097463	4097535	.	-	.	Parent=Os02t0174700-01
Chr02	irgsp1_rep	three_prime_UTR	4095629	4096581	.	-	.	Parent=Os02t0174700-01
Chr02	irgsp1_rep	mRNA	4095841	4097972	.	+	.	ID=Os02t0174800-01;Name=Os02t0174800-01;Locus_id=Os02g0174800;Note=Protein of unknown function DUF581 family protein.;Transcript_evidence=AK072843 (DDBJ%2C Best hit);ORF_evidence=A2X1H1 (UniProt);InterPro=Protein of unknown function DUF581 (IPR007650);NIAS_FLcDNA=J023143O11;Expression=AK072843;TENOR=Os02t0174800-01;KEGG=Os02t0174800-01
Chr02	irgsp1_rep	five_prime_UTR	4095841	4096096	.	+	.	Parent=Os02t0174800-01
Chr02	irgsp1_rep	CDS	4096097	4096593	.	+	0	Parent=Os02t0174800-01
Chr02	irgsp1_rep	CDS	4097490	4097649	.	+	1	Parent=Os02t0174800-01
Chr02	irgsp1_rep	three_prime_UTR	4097650	4097972	.	+	.	Parent=Os02t0174800-01
Chr02	irgsp1_rep	mRNA	4103333	4106241	.	-	.	ID=Os02t0174900-01;Name=Os02t0174900-01;Locus_id=Os02g0174900;Note=Hypothetical gene.;Transcript_evidence=AK121973 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033108I05;Expression=AK121973;TENOR=Os02t0174900-01;KEGG=Os02t0174900-01
Chr02	irgsp1_rep	five_prime_UTR	4106132	4106241	.	-	.	Parent=Os02t0174900-01
Chr02	irgsp1_rep	five_prime_UTR	4103592	4104602	.	-	.	Parent=Os02t0174900-01
Chr02	irgsp1_rep	CDS	4103355	4103591	.	-	0	Parent=Os02t0174900-01
Chr02	irgsp1_rep	three_prime_UTR	4103333	4103354	.	-	.	Parent=Os02t0174900-01
Chr02	irgsp1_rep	mRNA	4103387	4105657	.	+	.	ID=Os02t0175000-01;Name=Os02t0175000-01;Locus_id=Os02g0175000;RAP-DB Gene Symbol Synonym(s)=HKT6%2C OsHKT6%2C OsHKT1%3B3;RAP-DB Gene Name Synonym(s)=HIGH-AFFINITY K+ TRANSPORTER 6;CGSNL Gene Symbol=HKT6;CGSNL Gene Name=HIGH-AFFINITY K+ TRANSPORTER 6;Oryzabase Gene Symbol Synonym(s)=OsHKT6%2C OsHKT1%3B3%2C HKT1%3B3;Note=Ion transporter %2C Na+ transport;Transcript_evidence=AJ491818 (DDBJ);ORF_evidence=Q6H501 (UniProt),Q0E3H2 (UniProt);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Molecular Function: cation transmembrane transporter activity (GO:0008324);InterPro=Cation transporter (IPR003445);Manual Curation=August 24%2C 2009;Literature_PMID=12795699,16809061,19482918;Oryzabase=9021;TENOR=Os02t0175000-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	4103387	4103441	.	+	.	Parent=Os02t0175000-01
Chr02	irgsp1_rep	CDS	4103442	4104619	.	+	0	Parent=Os02t0175000-01
Chr02	irgsp1_rep	CDS	4105118	4105336	.	+	1	Parent=Os02t0175000-01
Chr02	irgsp1_rep	CDS	4105431	4105629	.	+	1	Parent=Os02t0175000-01
Chr02	irgsp1_rep	three_prime_UTR	4105630	4105657	.	+	.	Parent=Os02t0175000-01
Chr02	irgsp1_rep	mRNA	4109810	4112679	.	+	.	ID=Os02t0175100-01;Name=Os02t0175100-01;Locus_id=Os02g0175100;CGSNL Gene Symbol=RISBZ4;CGSNL Gene Name=RICE SEED B-ZIPPER 4;Oryzabase Gene Symbol Synonym(s)=OsbZIP15;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 15%2C rice seed b-Zipper 4;Note=Similar to RISBZ4.;Transcript_evidence=AK069575 (DDBJ%2C Best hit);ORF_evidence=Q9AVD0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);NIAS_FLcDNA=J023025A18;Oryzabase=10104;Expression=AK069575;TENOR=Os02t0175100-01;KEGG=Os02t0175100-01
Chr02	irgsp1_rep	five_prime_UTR	4109810	4109931	.	+	.	Parent=Os02t0175100-01
Chr02	irgsp1_rep	CDS	4109932	4110045	.	+	0	Parent=Os02t0175100-01
Chr02	irgsp1_rep	CDS	4110992	4111100	.	+	0	Parent=Os02t0175100-01
Chr02	irgsp1_rep	CDS	4111410	4111566	.	+	2	Parent=Os02t0175100-01
Chr02	irgsp1_rep	CDS	4111724	4111799	.	+	1	Parent=Os02t0175100-01
Chr02	irgsp1_rep	CDS	4111987	4112112	.	+	0	Parent=Os02t0175100-01
Chr02	irgsp1_rep	CDS	4112236	4112487	.	+	0	Parent=Os02t0175100-01
Chr02	irgsp1_rep	three_prime_UTR	4112488	4112679	.	+	.	Parent=Os02t0175100-01
Chr02	irgsp1_rep	mRNA	4112948	4113895	.	-	.	ID=Os02t0175200-00;Name=Os02t0175200-00;Locus_id=Os02g0175200;Note=Domain of unknown function DUF632 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6H4Z9 (UniProt);InterPro=Domain of unknown function DUF632 (IPR006867);TENOR=Os02t0175200-00
Chr02	irgsp1_rep	CDS	4112948	4113895	.	-	0	Parent=Os02t0175200-00
Chr02	irgsp1_rep	mRNA	4113678	4114097	.	+	.	ID=Os02t0175250-00;Name=Os02t0175250-00;Locus_id=Os02g0175250;Note=Hypothetical protein.;Transcript_evidence=AM939967 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0175250-00
Chr02	irgsp1_rep	five_prime_UTR	4113678	4113679	.	+	.	Parent=Os02t0175250-00
Chr02	irgsp1_rep	CDS	4113680	4113850	.	+	0	Parent=Os02t0175250-00
Chr02	irgsp1_rep	CDS	4113946	4114097	.	+	0	Parent=Os02t0175250-00
Chr02	irgsp1_rep	mRNA	4113940	4115856	.	-	.	ID=Os02t0175301-00;Name=Os02t0175301-00;Locus_id=Os02g0175301;Note=Domain of unknown function DUF632 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2X1H4 (UniProt);InterPro=Domain of unknown function DUF632 (IPR006867),Domain of unknown function DUF630 (IPR006868);TENOR=Os02t0175301-00
Chr02	irgsp1_rep	CDS	4114902	4115856	.	-	0	Parent=Os02t0175301-00
Chr02	irgsp1_rep	CDS	4113940	4114112	.	-	2	Parent=Os02t0175301-00
Chr02	irgsp1_rep	mRNA	4120173	4127533	.	+	.	ID=Os02t0175400-01;Name=Os02t0175400-01;Locus_id=Os02g0175400;Oryzabase Gene Symbol Synonym(s)=VHA-A2%2C VHAA2;Oryzabase Gene Name Synonym(s)=vacuolar H+-ATPase subunit A%2C Vacuolar proton-ATPase subunit A%2C vacuolar-type H+-ATPase subunit A2;Note=Similar to Vacuolar H(+)-ATPase subunit A (Fragment).;Transcript_evidence=AK067063 (DDBJ%2C Best hit);ORF_evidence=B6UH55 (UniProt);GO=Biological Process: ATP hydrolysis coupled proton transport (GO:0015991),Biological Process: proton transport (GO:0015992),Biological Process: ATP metabolic process (GO:0046034),Cellular Component: proton-transporting two-sector ATPase complex (GO:0016469),Cellular Component: proton-transporting two-sector ATPase complex%2C catalytic domain (GO:0033178),Cellular Component: proton-transporting V-type ATPase%2C V1 domain (GO:0033180),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C catalyzing transmembrane movement of substances (GO:0016820),Molecular Function: hydrogen ion transporting ATP synthase activity%2C rotational mechanism (GO:0046933),Molecular Function: proton-transporting ATPase activity%2C rotational mechanism (GO:0046961);InterPro=ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C nucleotide-binding domain (IPR000194),ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C C-terminal (IPR000793),ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C N-terminal (IPR004100),ATPase%2C V1 complex%2C subunit A (IPR005725),ATPase%2C F1/A1 complex%2C alpha/beta subunit%2C N-terminal (IPR018118),ATPase%2C alpha/beta subunit%2C nucleotide-binding domain%2C active site (IPR020003),V-type ATP synthase catalytic subunit A/alpha (IPR022878),ATPase%2C F1 complex beta subunit/V1 complex%2C C-terminal (IPR024034);NIAS_FLcDNA=J013089J10;Oryzabase=20519;Expression=AK067063;TENOR=Os02t0175400-01;KEGG=Os02t0175400-01 (EC:3.6.3.14)
Chr02	irgsp1_rep	five_prime_UTR	4120173	4120270	.	+	.	Parent=Os02t0175400-01
Chr02	irgsp1_rep	CDS	4120271	4120342	.	+	0	Parent=Os02t0175400-01
Chr02	irgsp1_rep	CDS	4121465	4121591	.	+	0	Parent=Os02t0175400-01
Chr02	irgsp1_rep	CDS	4121718	4121773	.	+	2	Parent=Os02t0175400-01
Chr02	irgsp1_rep	CDS	4121859	4121915	.	+	0	Parent=Os02t0175400-01
Chr02	irgsp1_rep	CDS	4122020	4122131	.	+	0	Parent=Os02t0175400-01
Chr02	irgsp1_rep	CDS	4122250	4122287	.	+	2	Parent=Os02t0175400-01
Chr02	irgsp1_rep	CDS	4122415	4122516	.	+	0	Parent=Os02t0175400-01
Chr02	irgsp1_rep	CDS	4122622	4122678	.	+	0	Parent=Os02t0175400-01
Chr02	irgsp1_rep	CDS	4122758	4122829	.	+	0	Parent=Os02t0175400-01
Chr02	irgsp1_rep	CDS	4122995	4123096	.	+	0	Parent=Os02t0175400-01
Chr02	irgsp1_rep	CDS	4123213	4123408	.	+	0	Parent=Os02t0175400-01
Chr02	irgsp1_rep	CDS	4123991	4124097	.	+	2	Parent=Os02t0175400-01
Chr02	irgsp1_rep	CDS	4124500	4124694	.	+	0	Parent=Os02t0175400-01
Chr02	irgsp1_rep	CDS	4124774	4124860	.	+	0	Parent=Os02t0175400-01
Chr02	irgsp1_rep	CDS	4125602	4125706	.	+	0	Parent=Os02t0175400-01
Chr02	irgsp1_rep	CDS	4126070	4126167	.	+	0	Parent=Os02t0175400-01
Chr02	irgsp1_rep	CDS	4126253	4126331	.	+	1	Parent=Os02t0175400-01
Chr02	irgsp1_rep	CDS	4126915	4127003	.	+	0	Parent=Os02t0175400-01
Chr02	irgsp1_rep	CDS	4127089	4127203	.	+	1	Parent=Os02t0175400-01
Chr02	irgsp1_rep	three_prime_UTR	4127204	4127533	.	+	.	Parent=Os02t0175400-01
Chr02	irgsp1_rep	mRNA	4129142	4133817	.	+	.	ID=Os02t0175500-01;Name=Os02t0175500-01;Locus_id=Os02g0175500;Note=Protein of unknown function DUF266%2C plant family protein.;Transcript_evidence=AK067170 (DDBJ%2C Best hit);ORF_evidence=Q01KD8 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: acetylglucosaminyltransferase activity (GO:0008375);InterPro=Glycosyl transferase%2C family 14 (IPR003406);NIAS_FLcDNA=J013098C06;Expression=AK067170;TENOR=Os02t0175500-01;KEGG=Os02t0175500-01
Chr02	irgsp1_rep	five_prime_UTR	4129142	4129398	.	+	.	Parent=Os02t0175500-01
Chr02	irgsp1_rep	five_prime_UTR	4129751	4129854	.	+	.	Parent=Os02t0175500-01
Chr02	irgsp1_rep	CDS	4129855	4130238	.	+	0	Parent=Os02t0175500-01
Chr02	irgsp1_rep	CDS	4130358	4130456	.	+	0	Parent=Os02t0175500-01
Chr02	irgsp1_rep	CDS	4131049	4131149	.	+	0	Parent=Os02t0175500-01
Chr02	irgsp1_rep	CDS	4131232	4131303	.	+	1	Parent=Os02t0175500-01
Chr02	irgsp1_rep	CDS	4131715	4131805	.	+	1	Parent=Os02t0175500-01
Chr02	irgsp1_rep	CDS	4132008	4132088	.	+	0	Parent=Os02t0175500-01
Chr02	irgsp1_rep	CDS	4132637	4132693	.	+	0	Parent=Os02t0175500-01
Chr02	irgsp1_rep	CDS	4132779	4132901	.	+	0	Parent=Os02t0175500-01
Chr02	irgsp1_rep	CDS	4133003	4133041	.	+	0	Parent=Os02t0175500-01
Chr02	irgsp1_rep	CDS	4133258	4133383	.	+	0	Parent=Os02t0175500-01
Chr02	irgsp1_rep	three_prime_UTR	4133384	4133817	.	+	.	Parent=Os02t0175500-01
Chr02	irgsp1_rep	mRNA	4134903	4135628	.	+	.	ID=Os02t0175600-01;Name=Os02t0175600-01;Locus_id=Os02g0175600;Note=Similar to 60S ribosomal protein L27a (Fragment).;Transcript_evidence=AK121069 (DDBJ%2C Best hit);ORF_evidence=B6T4H7 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L15%2C conserved site (IPR001196),Ribosomal protein L18e/L15P (IPR021131);NIAS_FLcDNA=J023061G23;Expression=AK121069;TENOR=Os02t0175600-01;KEGG=Os02t0175600-01
Chr02	irgsp1_rep	five_prime_UTR	4134903	4134956	.	+	.	Parent=Os02t0175600-01
Chr02	irgsp1_rep	CDS	4134957	4135391	.	+	0	Parent=Os02t0175600-01
Chr02	irgsp1_rep	three_prime_UTR	4135392	4135628	.	+	.	Parent=Os02t0175600-01
Chr02	irgsp1_rep	mRNA	4135897	4140382	.	-	.	ID=Os02t0175700-01;Name=Os02t0175700-01;Locus_id=Os02g0175700;Note=Epsin-like%2C N-terminal domain containing protein.;Transcript_evidence=AK069542 (DDBJ%2C Best hit);ORF_evidence=NP_001151036.1 (RefSeq);GO=Biological Process: clathrin coat assembly (GO:0048268),Cellular Component: clathrin coat (GO:0030118),Molecular Function: phospholipid binding (GO:0005543),Molecular Function: 1-phosphatidylinositol binding (GO:0005545),Molecular Function: clathrin binding (GO:0030276);InterPro=ENTH/VHS (IPR008942),ANTH (IPR011417),Epsin-like%2C N-terminal (IPR013809),Clathrin adaptor%2C phosphoinositide-binding%2C GAT-like (IPR014712);NIAS_FLcDNA=J023023L17;Expression=AK069542;TENOR=Os02t0175700-01;KEGG=Os02t0175700-01
Chr02	irgsp1_rep	five_prime_UTR	4140281	4140382	.	-	.	Parent=Os02t0175700-01
Chr02	irgsp1_rep	CDS	4140197	4140280	.	-	0	Parent=Os02t0175700-01
Chr02	irgsp1_rep	CDS	4139682	4139751	.	-	0	Parent=Os02t0175700-01
Chr02	irgsp1_rep	CDS	4139464	4139561	.	-	2	Parent=Os02t0175700-01
Chr02	irgsp1_rep	CDS	4139242	4139380	.	-	0	Parent=Os02t0175700-01
Chr02	irgsp1_rep	CDS	4138985	4139112	.	-	2	Parent=Os02t0175700-01
Chr02	irgsp1_rep	CDS	4138791	4138883	.	-	0	Parent=Os02t0175700-01
Chr02	irgsp1_rep	CDS	4138651	4138701	.	-	0	Parent=Os02t0175700-01
Chr02	irgsp1_rep	CDS	4138485	4138550	.	-	0	Parent=Os02t0175700-01
Chr02	irgsp1_rep	CDS	4138240	4138305	.	-	0	Parent=Os02t0175700-01
Chr02	irgsp1_rep	CDS	4138084	4138164	.	-	0	Parent=Os02t0175700-01
Chr02	irgsp1_rep	CDS	4137870	4137941	.	-	0	Parent=Os02t0175700-01
Chr02	irgsp1_rep	CDS	4137383	4137538	.	-	0	Parent=Os02t0175700-01
Chr02	irgsp1_rep	CDS	4137200	4137278	.	-	0	Parent=Os02t0175700-01
Chr02	irgsp1_rep	CDS	4136935	4137050	.	-	2	Parent=Os02t0175700-01
Chr02	irgsp1_rep	CDS	4136117	4136569	.	-	0	Parent=Os02t0175700-01
Chr02	irgsp1_rep	three_prime_UTR	4135897	4136116	.	-	.	Parent=Os02t0175700-01
Chr02	irgsp1_rep	mRNA	4136117	4136595	.	+	.	ID=Os02t0175750-00;Name=Os02t0175750-00;Locus_id=Os02g0175750;Note=Hypothetical protein.;Transcript_evidence=FP096424 (DDBJ);ORF_evidence=GeneMark;TENOR=Os02t0175750-00
Chr02	irgsp1_rep	five_prime_UTR	4136117	4136118	.	+	.	Parent=Os02t0175750-00
Chr02	irgsp1_rep	CDS	4136119	4136433	.	+	0	Parent=Os02t0175750-00
Chr02	irgsp1_rep	three_prime_UTR	4136434	4136595	.	+	.	Parent=Os02t0175750-00
Chr02	irgsp1_rep	mRNA	4141509	4143652	.	+	.	ID=Os02t0175800-01;Name=Os02t0175800-01;Locus_id=Os02g0175800;Note=Similar to fiber protein Fb15.;Transcript_evidence=AK120215 (DDBJ%2C Best hit);ORF_evidence=NP_001150164.1 (RefSeq);NIAS_FLcDNA=J013040G12;TENOR=Os02t0175800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	4141509	4141594	.	+	.	Parent=Os02t0175800-01
Chr02	irgsp1_rep	CDS	4141595	4141882	.	+	0	Parent=Os02t0175800-01
Chr02	irgsp1_rep	three_prime_UTR	4141883	4141889	.	+	.	Parent=Os02t0175800-01
Chr02	irgsp1_rep	three_prime_UTR	4143283	4143652	.	+	.	Parent=Os02t0175800-01
Chr02	irgsp1_rep	mRNA	4141550	4143528	.	+	.	ID=Os02t0175800-02;Name=Os02t0175800-02;Locus_id=Os02g0175800;Note=Similar to fiber protein Fb15.;Transcript_evidence=AK058292 (DDBJ%2C Best hit);ORF_evidence=NP_001150164.1 (RefSeq);NIAS_FLcDNA=001-013-E12;Expression=AK058292;TENOR=Os02t0175800-02;KEGG=Os02t0175800-02
Chr02	irgsp1_rep	five_prime_UTR	4141550	4141594	.	+	.	Parent=Os02t0175800-02
Chr02	irgsp1_rep	CDS	4141595	4141882	.	+	0	Parent=Os02t0175800-02
Chr02	irgsp1_rep	three_prime_UTR	4141883	4141894	.	+	.	Parent=Os02t0175800-02
Chr02	irgsp1_rep	three_prime_UTR	4143283	4143528	.	+	.	Parent=Os02t0175800-02
Chr02	irgsp1_rep	mRNA	4143281	4143494	.	-	.	ID=Os02t0175850-00;Name=Os02t0175850-00;Locus_id=Os02g0175850;Note=Non-protein coding transcript.;Transcript_evidence=BT017226 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0175850-00
Chr02	irgsp1_rep	exon	4143281	4143494	.	-	.	Parent=Os02t0175850-00
Chr02	irgsp1_rep	mRNA	4144343	4147044	.	-	.	ID=Os02t0175900-01;Name=Os02t0175900-01;Locus_id=Os02g0175900;Note=Mitotic checkpoint protein PRCC%2C C-terminal domain containing protein.;Transcript_evidence=AK064060 (DDBJ%2C Best hit);ORF_evidence=B8AIL0 (UniProt);InterPro=Mitotic checkpoint protein PRCC%2C C-terminal (IPR018800);NIAS_FLcDNA=001-125-F09;TENOR=Os02t0175900-01
Chr02	irgsp1_rep	five_prime_UTR	4146889	4147044	.	-	.	Parent=Os02t0175900-01
Chr02	irgsp1_rep	CDS	4145773	4146888	.	-	0	Parent=Os02t0175900-01
Chr02	irgsp1_rep	CDS	4144491	4144652	.	-	0	Parent=Os02t0175900-01
Chr02	irgsp1_rep	three_prime_UTR	4144343	4144490	.	-	.	Parent=Os02t0175900-01
Chr02	irgsp1_rep	mRNA	4144358	4147007	.	-	.	ID=Os02t0175900-02;Name=Os02t0175900-02;Locus_id=Os02g0175900;Note=Mitotic checkpoint protein PRCC%2C C-terminal domain containing protein.;Transcript_evidence=AK099377 (DDBJ%2C Best hit);ORF_evidence=B8AIL0 (UniProt);InterPro=Mitotic checkpoint protein PRCC%2C C-terminal (IPR018800);NIAS_FLcDNA=J033069A04;TENOR=Os02t0175900-02
Chr02	irgsp1_rep	five_prime_UTR	4146889	4147007	.	-	.	Parent=Os02t0175900-02
Chr02	irgsp1_rep	CDS	4145773	4146888	.	-	0	Parent=Os02t0175900-02
Chr02	irgsp1_rep	CDS	4144491	4144652	.	-	0	Parent=Os02t0175900-02
Chr02	irgsp1_rep	three_prime_UTR	4144358	4144490	.	-	.	Parent=Os02t0175900-02
Chr02	irgsp1_rep	mRNA	4150163	4150271	.	-	.	ID=Os02t0175950-00;Name=Os02t0175950-00;Locus_id=Os02g0175950;Note=Non-protein coding transcript.;Transcript_evidence=CT835469 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os02t0175950-00
Chr02	irgsp1_rep	exon	4150163	4150271	.	-	.	Parent=Os02t0175950-00
Chr02	irgsp1_rep	mRNA	4150302	4150970	.	-	.	ID=Os02t0176000-00;Name=Os02t0176000-00;Locus_id=Os02g0176000;Oryzabase Gene Symbol Synonym(s)=OsBBX2%2C BBX2;Oryzabase Gene Name Synonym(s)=B-box-containing protein 2;Note=Zinc finger%2C B-box domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001147455.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C B-box (IPR000315);Oryzabase=11634;TENOR=Os02t0176000-00;KEGG=Os02t0176000-00
Chr02	irgsp1_rep	CDS	4150302	4150970	.	-	0	Parent=Os02t0176000-00
Chr02	irgsp1_rep	mRNA	4170565	4175212	.	-	.	ID=Os02t0176100-01;Name=Os02t0176100-01;Locus_id=Os02g0176100;Note=Similar to predicted protein.;Transcript_evidence=AK070086 (DDBJ%2C Best hit);ORF_evidence=F2E3R5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J023040E15;Oryzabase=21896;TENOR=Os02t0176100-01
Chr02	irgsp1_rep	five_prime_UTR	4174985	4175212	.	-	.	Parent=Os02t0176100-01
Chr02	irgsp1_rep	CDS	4174849	4174984	.	-	0	Parent=Os02t0176100-01
Chr02	irgsp1_rep	CDS	4173869	4173998	.	-	2	Parent=Os02t0176100-01
Chr02	irgsp1_rep	CDS	4173720	4173788	.	-	1	Parent=Os02t0176100-01
Chr02	irgsp1_rep	CDS	4173457	4173522	.	-	1	Parent=Os02t0176100-01
Chr02	irgsp1_rep	CDS	4173302	4173373	.	-	1	Parent=Os02t0176100-01
Chr02	irgsp1_rep	CDS	4173153	4173224	.	-	1	Parent=Os02t0176100-01
Chr02	irgsp1_rep	CDS	4172909	4172980	.	-	1	Parent=Os02t0176100-01
Chr02	irgsp1_rep	CDS	4172767	4172832	.	-	1	Parent=Os02t0176100-01
Chr02	irgsp1_rep	CDS	4172108	4172173	.	-	1	Parent=Os02t0176100-01
Chr02	irgsp1_rep	CDS	4171547	4171953	.	-	1	Parent=Os02t0176100-01
Chr02	irgsp1_rep	CDS	4171402	4171458	.	-	2	Parent=Os02t0176100-01
Chr02	irgsp1_rep	CDS	4170917	4171299	.	-	2	Parent=Os02t0176100-01
Chr02	irgsp1_rep	CDS	4170565	4170833	.	-	0	Parent=Os02t0176100-01
Chr02	irgsp1_rep	mRNA	4167835	4175024	.	-	.	ID=Os02t0176100-02;Name=Os02t0176100-02;Locus_id=Os02g0176100;Note=Protein kinase-like domain containing protein.;Transcript_evidence=AK063386 (DDBJ%2C Best hit);ORF_evidence=F2E3R5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=001-114-G09;Oryzabase=21896;Expression=AK063386;TENOR=Os02t0176100-02;KEGG=Os02t0176100-02
Chr02	irgsp1_rep	five_prime_UTR	4174985	4175024	.	-	.	Parent=Os02t0176100-02
Chr02	irgsp1_rep	CDS	4174849	4174984	.	-	0	Parent=Os02t0176100-02
Chr02	irgsp1_rep	CDS	4173869	4173998	.	-	2	Parent=Os02t0176100-02
Chr02	irgsp1_rep	CDS	4173720	4173788	.	-	1	Parent=Os02t0176100-02
Chr02	irgsp1_rep	CDS	4173457	4173522	.	-	1	Parent=Os02t0176100-02
Chr02	irgsp1_rep	CDS	4173302	4173373	.	-	1	Parent=Os02t0176100-02
Chr02	irgsp1_rep	CDS	4173153	4173224	.	-	1	Parent=Os02t0176100-02
Chr02	irgsp1_rep	CDS	4172909	4172980	.	-	1	Parent=Os02t0176100-02
Chr02	irgsp1_rep	CDS	4172767	4172832	.	-	1	Parent=Os02t0176100-02
Chr02	irgsp1_rep	CDS	4172108	4172173	.	-	1	Parent=Os02t0176100-02
Chr02	irgsp1_rep	CDS	4171547	4171953	.	-	1	Parent=Os02t0176100-02
Chr02	irgsp1_rep	CDS	4171402	4171458	.	-	2	Parent=Os02t0176100-02
Chr02	irgsp1_rep	CDS	4170917	4171299	.	-	2	Parent=Os02t0176100-02
Chr02	irgsp1_rep	CDS	4170565	4170833	.	-	0	Parent=Os02t0176100-02
Chr02	irgsp1_rep	CDS	4170321	4170459	.	-	1	Parent=Os02t0176100-02
Chr02	irgsp1_rep	CDS	4168954	4169093	.	-	0	Parent=Os02t0176100-02
Chr02	irgsp1_rep	CDS	4168675	4168831	.	-	1	Parent=Os02t0176100-02
Chr02	irgsp1_rep	CDS	4168167	4168253	.	-	0	Parent=Os02t0176100-02
Chr02	irgsp1_rep	three_prime_UTR	4167835	4168166	.	-	.	Parent=Os02t0176100-02
Chr02	irgsp1_rep	mRNA	4165207	4170723	.	-	.	ID=Os02t0176100-03;Name=Os02t0176100-03;Locus_id=Os02g0176100;Note=Similar to predicted protein.;Transcript_evidence=AK070816 (DDBJ%2C Best hit);ORF_evidence=C6ZRT5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023066M01;Oryzabase=21896;Expression=AK070816;TENOR=Os02t0176100-03;KEGG=Os02t0176100-03
Chr02	irgsp1_rep	five_prime_UTR	4170723	4170723	.	-	.	Parent=Os02t0176100-03
Chr02	irgsp1_rep	CDS	4170565	4170722	.	-	0	Parent=Os02t0176100-03
Chr02	irgsp1_rep	CDS	4170321	4170459	.	-	1	Parent=Os02t0176100-03
Chr02	irgsp1_rep	CDS	4168954	4169093	.	-	0	Parent=Os02t0176100-03
Chr02	irgsp1_rep	CDS	4168675	4168831	.	-	1	Parent=Os02t0176100-03
Chr02	irgsp1_rep	CDS	4168167	4168253	.	-	0	Parent=Os02t0176100-03
Chr02	irgsp1_rep	three_prime_UTR	4165207	4168166	.	-	.	Parent=Os02t0176100-03
Chr02	irgsp1_rep	mRNA	4182680	4184658	.	+	.	ID=Os02t0176300-01;Name=Os02t0176300-01;Locus_id=Os02g0176300;Note=Hypothetical protein.;Transcript_evidence=AK066588 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013072N24;Expression=AK066588;TENOR=Os02t0176300-01;KEGG=Os02t0176300-01
Chr02	irgsp1_rep	five_prime_UTR	4182680	4183135	.	+	.	Parent=Os02t0176300-01
Chr02	irgsp1_rep	CDS	4183136	4183426	.	+	0	Parent=Os02t0176300-01
Chr02	irgsp1_rep	three_prime_UTR	4183427	4184658	.	+	.	Parent=Os02t0176300-01
Chr02	irgsp1_rep	mRNA	4184309	4185807	.	-	.	ID=Os02t0176400-01;Name=Os02t0176400-01;Locus_id=Os02g0176400;Note=Uncharacterised protein family UPF0414 domain containing protein.;Transcript_evidence=AK062746 (DDBJ%2C Best hit);ORF_evidence=A2X1I9 (UniProt);InterPro=Protein of unknown function DUF872%2C transmembrane (IPR008590);NIAS_FLcDNA=001-106-F08;Expression=AK062746;TENOR=Os02t0176400-01;KEGG=Os02t0176400-01
Chr02	irgsp1_rep	five_prime_UTR	4185579	4185807	.	-	.	Parent=Os02t0176400-01
Chr02	irgsp1_rep	CDS	4185389	4185578	.	-	0	Parent=Os02t0176400-01
Chr02	irgsp1_rep	CDS	4184547	4184668	.	-	2	Parent=Os02t0176400-01
Chr02	irgsp1_rep	three_prime_UTR	4184309	4184546	.	-	.	Parent=Os02t0176400-01
Chr02	irgsp1_rep	mRNA	4195529	4195944	.	-	.	ID=Os02t0176650-01;Name=Os02t0176650-01;Locus_id=Os02g0176650;Note=Non-protein coding transcript.;Transcript_evidence=AK242506 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080310A18;TENOR=Os02t0176650-01
Chr02	irgsp1_rep	exon	4195529	4195944	.	-	.	Parent=Os02t0176650-01
Chr02	irgsp1_rep	mRNA	4196026	4208370	.	-	.	ID=Os02t0176700-00;Name=Os02t0176700-00;Locus_id=Os02g0176700;CGSNL Gene Symbol=ACA9;CGSNL Gene Name=CA2+-ATPASE 9;Oryzabase Gene Symbol Synonym(s)=osACA9%2C OsACA2%2C OsPM2ATP9;Oryzabase Gene Name Synonym(s)=Ca2+ P-Type ATPase 9;Note=Similar to autoinhibited calcium ATPase.;Transcript_evidence=ab initio prediction;ORF_evidence=XP_002310944.1 (RefSeq);GO=Biological Process: ATP biosynthetic process (GO:0006754),Biological Process: cation transport (GO:0006812),Biological Process: metabolic process (GO:0008152),Biological Process: calcium ion transmembrane transport (GO:0070588),Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: calcium-transporting ATPase activity (GO:0005388),Molecular Function: calmodulin binding (GO:0005516),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662),Molecular Function: metal ion binding (GO:0046872);InterPro=ATPase%2C P-type%2C H+ transporting proton pump (IPR000695),ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),ATPase%2C P-type cation-transporter%2C N-terminal (IPR004014),Haloacid dehalogenase-like hydrolase (IPR005834),ATPase%2C P-type cation-transporter%2C C-terminal (IPR006068),ATPase%2C P-type%2C calcium-transporting%2C PMCA-type (IPR006408),ATPase%2C P-type%2C ATPase-associated domain (IPR008250),ATPase%2C P-type phosphorylation site (IPR018303),HAD-like domain (IPR023214),ATPase%2C P-type%2C  transmembrane domain (IPR023298),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C  P-type%2C cytoplasmic transduction domain A (IPR023300),Calcium-transporting ATPase%2C N-terminal autoinhibitory domain (IPR024750);Oryzabase=13241;TENOR=Os02t0176700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	4208188	4208370	.	-	0	Parent=Os02t0176700-00
Chr02	irgsp1_rep	CDS	4207171	4207287	.	-	0	Parent=Os02t0176700-00
Chr02	irgsp1_rep	CDS	4206498	4206629	.	-	0	Parent=Os02t0176700-00
Chr02	irgsp1_rep	CDS	4206225	4206314	.	-	0	Parent=Os02t0176700-00
Chr02	irgsp1_rep	CDS	4205946	4206015	.	-	0	Parent=Os02t0176700-00
Chr02	irgsp1_rep	CDS	4204809	4204879	.	-	2	Parent=Os02t0176700-00
Chr02	irgsp1_rep	CDS	4204636	4204719	.	-	0	Parent=Os02t0176700-00
Chr02	irgsp1_rep	CDS	4204465	4204542	.	-	0	Parent=Os02t0176700-00
Chr02	irgsp1_rep	CDS	4204314	4204385	.	-	0	Parent=Os02t0176700-00
Chr02	irgsp1_rep	CDS	4203845	4203928	.	-	0	Parent=Os02t0176700-00
Chr02	irgsp1_rep	CDS	4203445	4203527	.	-	0	Parent=Os02t0176700-00
Chr02	irgsp1_rep	CDS	4202566	4202608	.	-	1	Parent=Os02t0176700-00
Chr02	irgsp1_rep	CDS	4202410	4202493	.	-	0	Parent=Os02t0176700-00
Chr02	irgsp1_rep	CDS	4202165	4202302	.	-	0	Parent=Os02t0176700-00
Chr02	irgsp1_rep	CDS	4201582	4201647	.	-	0	Parent=Os02t0176700-00
Chr02	irgsp1_rep	CDS	4201404	4201502	.	-	0	Parent=Os02t0176700-00
Chr02	irgsp1_rep	CDS	4200611	4200721	.	-	0	Parent=Os02t0176700-00
Chr02	irgsp1_rep	CDS	4200374	4200541	.	-	0	Parent=Os02t0176700-00
Chr02	irgsp1_rep	CDS	4199737	4199796	.	-	0	Parent=Os02t0176700-00
Chr02	irgsp1_rep	CDS	4199198	4199359	.	-	0	Parent=Os02t0176700-00
Chr02	irgsp1_rep	CDS	4198743	4198859	.	-	0	Parent=Os02t0176700-00
Chr02	irgsp1_rep	CDS	4198506	4198604	.	-	0	Parent=Os02t0176700-00
Chr02	irgsp1_rep	CDS	4198288	4198425	.	-	0	Parent=Os02t0176700-00
Chr02	irgsp1_rep	CDS	4197361	4197461	.	-	0	Parent=Os02t0176700-00
Chr02	irgsp1_rep	CDS	4196987	4197080	.	-	1	Parent=Os02t0176700-00
Chr02	irgsp1_rep	CDS	4196542	4196633	.	-	0	Parent=Os02t0176700-00
Chr02	irgsp1_rep	CDS	4196248	4196336	.	-	1	Parent=Os02t0176700-00
Chr02	irgsp1_rep	CDS	4196026	4196072	.	-	2	Parent=Os02t0176700-00
Chr02	irgsp1_rep	mRNA	4220950	4223647	.	-	.	ID=Os02t0176900-00;Name=Os02t0176900-00;Locus_id=Os02g0176900;Note=Similar to apospory-associated protein C.;Transcript_evidence=AK357347 (DDBJ);ORF_evidence=NP_001147314.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: isomerase activity (GO:0016853),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Aldose 1-epimerase (IPR008183),Glycoside hydrolase-type carbohydrate-binding (IPR011013),Glycoside hydrolase-type carbohydrate-binding%2C subgroup (IPR014718);TENOR=Os02t0176900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	4223600	4223647	.	-	.	Parent=Os02t0176900-00
Chr02	irgsp1_rep	CDS	4223504	4223599	.	-	0	Parent=Os02t0176900-00
Chr02	irgsp1_rep	CDS	4222755	4222829	.	-	0	Parent=Os02t0176900-00
Chr02	irgsp1_rep	CDS	4222417	4222473	.	-	0	Parent=Os02t0176900-00
Chr02	irgsp1_rep	CDS	4222165	4222322	.	-	0	Parent=Os02t0176900-00
Chr02	irgsp1_rep	CDS	4221899	4222039	.	-	1	Parent=Os02t0176900-00
Chr02	irgsp1_rep	CDS	4221528	4221630	.	-	1	Parent=Os02t0176900-00
Chr02	irgsp1_rep	CDS	4221342	4221441	.	-	0	Parent=Os02t0176900-00
Chr02	irgsp1_rep	CDS	4220950	4221170	.	-	2	Parent=Os02t0176900-00
Chr02	irgsp1_rep	mRNA	4247435	4251025	.	+	.	ID=Os02t0177300-00;Name=Os02t0177300-00;Locus_id=Os02g0177300;CGSNL Gene Symbol=SPL5;CGSNL Gene Name=RICE SQUAMOSA PROMOTER-BINDING-LIKE 5;Oryzabase Gene Symbol Synonym(s)=OsSPL5;Oryzabase Gene Name Synonym(s)=Squamosa promoter-binding-like protein 5;Note=Squamosa-promoter binding protein 1.;Transcript_evidence=AJ011615 (DDBJ);ORF_evidence=Q0E3F8 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Transcription factor%2C SBP-box (IPR004333);Oryzabase=11239;TENOR=Os02t0177300-00;KEGG=Os02t0177300-00
Chr02	irgsp1_rep	five_prime_UTR	4247435	4247441	.	+	.	Parent=Os02t0177300-00
Chr02	irgsp1_rep	CDS	4247442	4248199	.	+	0	Parent=Os02t0177300-00
Chr02	irgsp1_rep	CDS	4249504	4249694	.	+	1	Parent=Os02t0177300-00
Chr02	irgsp1_rep	CDS	4250568	4251025	.	+	2	Parent=Os02t0177300-00
Chr02	irgsp1_rep	mRNA	4264389	4268820	.	-	.	ID=Os02t0177400-01;Name=Os02t0177400-01;Locus_id=Os02g0177400;Oryzabase Gene Name Synonym(s)=Conserved hypothetical protein;Note=Conserved hypothetical protein.;Transcript_evidence=AK102107 (DDBJ%2C Best hit);ORF_evidence=B9F3D2 (UniProt);NIAS_FLcDNA=J033084D15;Oryzabase=22022;Expression=AK102107;TENOR=Os02t0177400-01;KEGG=Os02t0177400-01
Chr02	irgsp1_rep	five_prime_UTR	4268792	4268820	.	-	.	Parent=Os02t0177400-01
Chr02	irgsp1_rep	CDS	4268572	4268791	.	-	0	Parent=Os02t0177400-01
Chr02	irgsp1_rep	CDS	4267725	4267765	.	-	2	Parent=Os02t0177400-01
Chr02	irgsp1_rep	CDS	4267511	4267623	.	-	0	Parent=Os02t0177400-01
Chr02	irgsp1_rep	CDS	4266905	4267142	.	-	1	Parent=Os02t0177400-01
Chr02	irgsp1_rep	CDS	4266117	4266243	.	-	0	Parent=Os02t0177400-01
Chr02	irgsp1_rep	CDS	4265739	4266010	.	-	2	Parent=Os02t0177400-01
Chr02	irgsp1_rep	CDS	4265537	4265633	.	-	0	Parent=Os02t0177400-01
Chr02	irgsp1_rep	CDS	4265368	4265440	.	-	2	Parent=Os02t0177400-01
Chr02	irgsp1_rep	CDS	4264759	4265005	.	-	1	Parent=Os02t0177400-01
Chr02	irgsp1_rep	three_prime_UTR	4264758	4264758	.	-	.	Parent=Os02t0177400-01
Chr02	irgsp1_rep	three_prime_UTR	4264389	4264655	.	-	.	Parent=Os02t0177400-01
Chr02	irgsp1_rep	mRNA	4270620	4274199	.	-	.	ID=Os02t0177500-01;Name=Os02t0177500-01;Locus_id=Os02g0177500;Oryzabase Gene Name Synonym(s)=Sm gene%2C Sm family protein;Note=Similar to Small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F) (SmF).;Transcript_evidence=AK062715 (DDBJ%2C Best hit);ORF_evidence=NP_001150516.1 (RefSeq);GO=Biological Process: RNA processing (GO:0006396),Cellular Component: nucleus (GO:0005634);InterPro=Like-Sm ribonucleoprotein (LSM) domain (IPR001163),Like-Sm ribonucleoprotein (LSM) domain%2C eukaryotic/archaea-type (IPR006649),Like-Sm ribonucleoprotein (LSM)-related domain (IPR010920),Small nuclear ribonucleoprotein SmF (IPR016487);NIAS_FLcDNA=001-106-C07;Oryzabase=15640;Expression=AK062715;TENOR=Os02t0177500-01;KEGG=Os02t0177500-01
Chr02	irgsp1_rep	five_prime_UTR	4274143	4274199	.	-	.	Parent=Os02t0177500-01
Chr02	irgsp1_rep	CDS	4274137	4274142	.	-	0	Parent=Os02t0177500-01
Chr02	irgsp1_rep	CDS	4272063	4272150	.	-	0	Parent=Os02t0177500-01
Chr02	irgsp1_rep	CDS	4271720	4271757	.	-	2	Parent=Os02t0177500-01
Chr02	irgsp1_rep	CDS	4271551	4271615	.	-	0	Parent=Os02t0177500-01
Chr02	irgsp1_rep	CDS	4270811	4270874	.	-	1	Parent=Os02t0177500-01
Chr02	irgsp1_rep	three_prime_UTR	4270620	4270810	.	-	.	Parent=Os02t0177500-01
Chr02	irgsp1_rep	mRNA	4280502	4285929	.	+	.	ID=Os02t0177600-01;Name=Os02t0177600-01;Locus_id=Os02g0177600;RAP-DB Gene Symbol Synonym(s)=4CL3%2C Os4CL3;RAP-DB Gene Name Synonym(s)=4-COUMARATE:COENZYME A LIGASE 3%2C 4-Coumarate:coenzyme A ligase 3;CGSNL Gene Symbol=4CL3;CGSNL Gene Name=4-COUMARATE:COENZYME A LIGASE 3;Oryzabase Gene Symbol Synonym(s)=Os4CL3%2C Os4CL2%2C Os4CL%2C 4CL2%2C 4CL;Oryzabase Gene Name Synonym(s)=4-coumarate:coenzyme A ligase 3%2C 4-hydroxycinnamate CoA ligase 2;Note=4-coumarate:coenzyme A ligase%2C Lignin biosynthesis%2C Defense against wounding;Transcript_evidence=AK070083;ORF_evidence=Q6ETN3;GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873),AMP-binding enzyme%2C C-terminal domain (IPR025110),AMP-binding%2C conserved site (IPR020845);NIAS_FLcDNA=J023045L07;Manual Curation=May 26%2C 2017;Literature_PMID=23246835,21807887;Oryzabase=9682;Expression=AK070083;TENOR=Os02t0177600-01;KEGG=Os02t0177600-01 (EC:6.2.1.12);B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	4280502	4280592	.	+	.	Parent=Os02t0177600-01
Chr02	irgsp1_rep	CDS	4280593	4281228	.	+	0	Parent=Os02t0177600-01
Chr02	irgsp1_rep	CDS	4281752	4282105	.	+	0	Parent=Os02t0177600-01
Chr02	irgsp1_rep	CDS	4282217	4282415	.	+	0	Parent=Os02t0177600-01
Chr02	irgsp1_rep	CDS	4284994	4285207	.	+	2	Parent=Os02t0177600-01
Chr02	irgsp1_rep	CDS	4285302	4285404	.	+	1	Parent=Os02t0177600-01
Chr02	irgsp1_rep	CDS	4285484	4285642	.	+	0	Parent=Os02t0177600-01
Chr02	irgsp1_rep	three_prime_UTR	4285643	4285929	.	+	.	Parent=Os02t0177600-01
Chr02	irgsp1_rep	mRNA	4280604	4282119	.	-	.	ID=Os02t0177633-00;Name=Os02t0177633-00;Locus_id=Os02g0177633;Note=Hypothetical protein.;Transcript_evidence=BT062457 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0177633-00
Chr02	irgsp1_rep	five_prime_UTR	4281826	4282119	.	-	.	Parent=Os02t0177633-00
Chr02	irgsp1_rep	CDS	4281767	4281825	.	-	0	Parent=Os02t0177633-00
Chr02	irgsp1_rep	CDS	4280604	4281247	.	-	1	Parent=Os02t0177633-00
Chr02	irgsp1_rep	mRNA	4282291	4285216	.	-	.	ID=Os02t0177666-00;Name=Os02t0177666-00;Locus_id=Os02g0177666;Note=Hypothetical protein.;Transcript_evidence=BT017473 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0177666-00
Chr02	irgsp1_rep	five_prime_UTR	4285172	4285216	.	-	.	Parent=Os02t0177666-00
Chr02	irgsp1_rep	CDS	4285041	4285171	.	-	0	Parent=Os02t0177666-00
Chr02	irgsp1_rep	CDS	4282291	4282460	.	-	1	Parent=Os02t0177666-00
Chr02	irgsp1_rep	mRNA	4286999	4288829	.	-	.	ID=Os02t0177700-01;Name=Os02t0177700-01;Locus_id=Os02g0177700;Note=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup domain containing protein.;Transcript_evidence=AK119941 (DDBJ%2C Best hit);ORF_evidence=NP_001152092.1 (RefSeq);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup (IPR006459),Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);NIAS_FLcDNA=002-184-B07;Expression=AK119941;TENOR=Os02t0177700-01;KEGG=Os02t0177700-01
Chr02	irgsp1_rep	five_prime_UTR	4288756	4288829	.	-	.	Parent=Os02t0177700-01
Chr02	irgsp1_rep	CDS	4288577	4288755	.	-	0	Parent=Os02t0177700-01
Chr02	irgsp1_rep	CDS	4288363	4288492	.	-	1	Parent=Os02t0177700-01
Chr02	irgsp1_rep	CDS	4287204	4287482	.	-	0	Parent=Os02t0177700-01
Chr02	irgsp1_rep	three_prime_UTR	4286999	4287203	.	-	.	Parent=Os02t0177700-01
Chr02	irgsp1_rep	mRNA	4294589	4299059	.	-	.	ID=Os02t0177800-01;Name=Os02t0177800-01;Locus_id=Os02g0177800;Note=Similar to calmodulin binding protein.;Transcript_evidence=AK065684 (DDBJ%2C Best hit);ORF_evidence=NP_001150045.1 (RefSeq);InterPro=Calmodulin binding protein-like (IPR012416);NIAS_FLcDNA=J013042G07;Expression=AK065684;TENOR=Os02t0177800-01;KEGG=Os02t0177800-01
Chr02	irgsp1_rep	five_prime_UTR	4298957	4299059	.	-	.	Parent=Os02t0177800-01
Chr02	irgsp1_rep	five_prime_UTR	4298849	4298863	.	-	.	Parent=Os02t0177800-01
Chr02	irgsp1_rep	CDS	4298760	4298848	.	-	0	Parent=Os02t0177800-01
Chr02	irgsp1_rep	CDS	4297769	4297844	.	-	1	Parent=Os02t0177800-01
Chr02	irgsp1_rep	CDS	4297529	4297587	.	-	0	Parent=Os02t0177800-01
Chr02	irgsp1_rep	CDS	4296668	4297161	.	-	1	Parent=Os02t0177800-01
Chr02	irgsp1_rep	CDS	4296428	4296588	.	-	2	Parent=Os02t0177800-01
Chr02	irgsp1_rep	CDS	4296148	4296351	.	-	0	Parent=Os02t0177800-01
Chr02	irgsp1_rep	CDS	4294589	4294765	.	-	0	Parent=Os02t0177800-01
Chr02	irgsp1_rep	mRNA	4293248	4299056	.	-	.	ID=Os02t0177800-02;Name=Os02t0177800-02;Locus_id=Os02g0177800;Note=Similar to Calmodulin-binding protein 60-B (Fragment).;Transcript_evidence=AK101699 (DDBJ%2C Best hit);ORF_evidence=B6UE51 (UniProt);InterPro=Calmodulin binding protein-like (IPR012416);NIAS_FLcDNA=J033060E07;Expression=AK101699;TENOR=Os02t0177800-02;KEGG=Os02t0177800-02
Chr02	irgsp1_rep	five_prime_UTR	4298957	4299056	.	-	.	Parent=Os02t0177800-02
Chr02	irgsp1_rep	five_prime_UTR	4298849	4298863	.	-	.	Parent=Os02t0177800-02
Chr02	irgsp1_rep	CDS	4298760	4298848	.	-	0	Parent=Os02t0177800-02
Chr02	irgsp1_rep	CDS	4297769	4297844	.	-	1	Parent=Os02t0177800-02
Chr02	irgsp1_rep	CDS	4297529	4297587	.	-	0	Parent=Os02t0177800-02
Chr02	irgsp1_rep	CDS	4296668	4297161	.	-	1	Parent=Os02t0177800-02
Chr02	irgsp1_rep	CDS	4296428	4296588	.	-	2	Parent=Os02t0177800-02
Chr02	irgsp1_rep	CDS	4296148	4296351	.	-	0	Parent=Os02t0177800-02
Chr02	irgsp1_rep	CDS	4294564	4294765	.	-	0	Parent=Os02t0177800-02
Chr02	irgsp1_rep	CDS	4293531	4294120	.	-	2	Parent=Os02t0177800-02
Chr02	irgsp1_rep	three_prime_UTR	4293248	4293530	.	-	.	Parent=Os02t0177800-02
Chr02	irgsp1_rep	mRNA	4304103	4306900	.	+	.	ID=Os02t0177900-01;Name=Os02t0177900-01;Locus_id=Os02g0177900;Note=Carbohydrate kinase%2C FGGY domain containing protein.;Transcript_evidence=AK060768 (DDBJ%2C Best hit);ORF_evidence=Q6ETN0 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Carbohydrate kinase%2C FGGY (IPR000577),Carbohydrate kinase%2C FGGY%2C C-terminal (IPR018485);NIAS_FLcDNA=001-033-A12;TENOR=Os02t0177900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	4304103	4304104	.	+	.	Parent=Os02t0177900-01
Chr02	irgsp1_rep	CDS	4304105	4304201	.	+	0	Parent=Os02t0177900-01
Chr02	irgsp1_rep	CDS	4304295	4304354	.	+	2	Parent=Os02t0177900-01
Chr02	irgsp1_rep	CDS	4304539	4304649	.	+	2	Parent=Os02t0177900-01
Chr02	irgsp1_rep	CDS	4304734	4304862	.	+	2	Parent=Os02t0177900-01
Chr02	irgsp1_rep	CDS	4305005	4305124	.	+	2	Parent=Os02t0177900-01
Chr02	irgsp1_rep	CDS	4305226	4305346	.	+	2	Parent=Os02t0177900-01
Chr02	irgsp1_rep	CDS	4305891	4306047	.	+	1	Parent=Os02t0177900-01
Chr02	irgsp1_rep	CDS	4306144	4306215	.	+	0	Parent=Os02t0177900-01
Chr02	irgsp1_rep	CDS	4306302	4306430	.	+	0	Parent=Os02t0177900-01
Chr02	irgsp1_rep	CDS	4306576	4306698	.	+	0	Parent=Os02t0177900-01
Chr02	irgsp1_rep	three_prime_UTR	4306699	4306900	.	+	.	Parent=Os02t0177900-01
Chr02	irgsp1_rep	mRNA	4304163	4309655	.	+	.	ID=Os02t0177900-02;Name=Os02t0177900-02;Locus_id=Os02g0177900;Note=Carbohydrate kinase%2C FGGY family protein.;Transcript_evidence=AK066421 (DDBJ%2C Best hit);ORF_evidence=Q6ETN0 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Carbohydrate kinase%2C FGGY (IPR000577),Carbohydrate kinase%2C FGGY%2C C-terminal (IPR018485);NIAS_FLcDNA=J013059J24;Expression=AK066421;TENOR=Os02t0177900-02;KEGG=Os02t0177900-02
Chr02	irgsp1_rep	five_prime_UTR	4304163	4304164	.	+	.	Parent=Os02t0177900-02
Chr02	irgsp1_rep	CDS	4304165	4304201	.	+	0	Parent=Os02t0177900-02
Chr02	irgsp1_rep	CDS	4304295	4304354	.	+	2	Parent=Os02t0177900-02
Chr02	irgsp1_rep	CDS	4304539	4304649	.	+	2	Parent=Os02t0177900-02
Chr02	irgsp1_rep	CDS	4304734	4304862	.	+	2	Parent=Os02t0177900-02
Chr02	irgsp1_rep	CDS	4305005	4305124	.	+	2	Parent=Os02t0177900-02
Chr02	irgsp1_rep	CDS	4305226	4305346	.	+	2	Parent=Os02t0177900-02
Chr02	irgsp1_rep	CDS	4305891	4306047	.	+	1	Parent=Os02t0177900-02
Chr02	irgsp1_rep	CDS	4306144	4306215	.	+	0	Parent=Os02t0177900-02
Chr02	irgsp1_rep	CDS	4306302	4306430	.	+	0	Parent=Os02t0177900-02
Chr02	irgsp1_rep	CDS	4306576	4306698	.	+	0	Parent=Os02t0177900-02
Chr02	irgsp1_rep	three_prime_UTR	4306699	4309655	.	+	.	Parent=Os02t0177900-02
Chr02	irgsp1_rep	mRNA	4306895	4309939	.	-	.	ID=Os02t0178000-01;Name=Os02t0178000-01;Locus_id=Os02g0178000;Oryzabase Gene Symbol Synonym(s)=SnRK1%2C OsSnRK1;Oryzabase Gene Name Synonym(s)=SnRK1 subfamily protein%2C SNF1-related protein kinase 1 subfamily protein;Note=Similar to SNF1 related protein kinase-like protein.;Transcript_evidence=AK111625 (DDBJ%2C Best hit);ORF_evidence=C4P7W3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),NAF domain (IPR004041),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),NAF/FISL domain (IPR018451);NIAS_FLcDNA=J013113N20;Oryzabase=22000;Expression=AK111625;TENOR=Os02t0178000-01;KEGG=Os02t0178000-01 (EC:2.7.11.11)
Chr02	irgsp1_rep	five_prime_UTR	4309912	4309939	.	-	.	Parent=Os02t0178000-01
Chr02	irgsp1_rep	CDS	4309750	4309911	.	-	0	Parent=Os02t0178000-01
Chr02	irgsp1_rep	CDS	4309459	4309521	.	-	0	Parent=Os02t0178000-01
Chr02	irgsp1_rep	CDS	4309275	4309346	.	-	0	Parent=Os02t0178000-01
Chr02	irgsp1_rep	CDS	4309063	4309170	.	-	0	Parent=Os02t0178000-01
Chr02	irgsp1_rep	CDS	4308868	4308939	.	-	0	Parent=Os02t0178000-01
Chr02	irgsp1_rep	CDS	4308731	4308784	.	-	0	Parent=Os02t0178000-01
Chr02	irgsp1_rep	CDS	4308536	4308661	.	-	0	Parent=Os02t0178000-01
Chr02	irgsp1_rep	CDS	4308360	4308449	.	-	0	Parent=Os02t0178000-01
Chr02	irgsp1_rep	CDS	4308126	4308263	.	-	0	Parent=Os02t0178000-01
Chr02	irgsp1_rep	CDS	4307920	4308027	.	-	0	Parent=Os02t0178000-01
Chr02	irgsp1_rep	CDS	4307718	4307822	.	-	0	Parent=Os02t0178000-01
Chr02	irgsp1_rep	CDS	4307562	4307624	.	-	0	Parent=Os02t0178000-01
Chr02	irgsp1_rep	CDS	4307390	4307464	.	-	0	Parent=Os02t0178000-01
Chr02	irgsp1_rep	CDS	4307207	4307281	.	-	0	Parent=Os02t0178000-01
Chr02	irgsp1_rep	three_prime_UTR	4306895	4307206	.	-	.	Parent=Os02t0178000-01
Chr02	irgsp1_rep	mRNA	4315391	4316956	.	+	.	ID=Os02t0178100-01;Name=Os02t0178100-01;Locus_id=Os02g0178100;Oryzabase Gene Symbol Synonym(s)=OsBBX3%2C OsF%2C OsCCT05%2C BBX3%2C CCT05;Oryzabase Gene Name Synonym(s)=B-box-containing protein 3%2C CCT domain-containing gene 5%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 5%2C CCT domain protein 5%2C CONSTANS-like gene F;Note=Similar to CONSTANS-like protein CO6.;Transcript_evidence=AK109630 (DDBJ%2C Best hit);ORF_evidence=NP_001148229.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C B-box (IPR000315),CCT domain (IPR010402);NIAS_FLcDNA=002-138-D02;Oryzabase=11635;TENOR=Os02t0178100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	4315391	4315392	.	+	.	Parent=Os02t0178100-01
Chr02	irgsp1_rep	CDS	4315393	4315959	.	+	0	Parent=Os02t0178100-01
Chr02	irgsp1_rep	CDS	4316063	4316191	.	+	0	Parent=Os02t0178100-01
Chr02	irgsp1_rep	CDS	4316285	4316584	.	+	0	Parent=Os02t0178100-01
Chr02	irgsp1_rep	three_prime_UTR	4316585	4316956	.	+	.	Parent=Os02t0178100-01
Chr02	irgsp1_rep	mRNA	4320498	4324030	.	+	.	ID=Os02t0178200-00;Name=Os02t0178200-00;Locus_id=Os02g0178200;Oryzabase Gene Symbol Synonym(s)=OsFbox069%2C OsFbox69%2C Os_F0227;Oryzabase Gene Name Synonym(s)=F-box protein 69;Note=Hypothetical conserved gene.;Transcript_evidence=AK335085 (DDBJ);ORF_evidence=Q6ETM5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),FBD (IPR013596),F-box domain%2C Skp2-like (IPR022364);Oryzabase=16866;TENOR=Os02t0178200-00;KEGG=Os02t0178200-00
Chr02	irgsp1_rep	five_prime_UTR	4320498	4320545	.	+	.	Parent=Os02t0178200-00
Chr02	irgsp1_rep	CDS	4320546	4321616	.	+	0	Parent=Os02t0178200-00
Chr02	irgsp1_rep	CDS	4321728	4321871	.	+	0	Parent=Os02t0178200-00
Chr02	irgsp1_rep	CDS	4323509	4323886	.	+	0	Parent=Os02t0178200-00
Chr02	irgsp1_rep	three_prime_UTR	4323887	4324030	.	+	.	Parent=Os02t0178200-00
Chr02	irgsp1_rep	mRNA	4320520	4323891	.	-	.	ID=Os02t0178250-00;Name=Os02t0178250-00;Locus_id=Os02g0178250;Note=Hypothetical protein.;Transcript_evidence=tplb0059j12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0178250-00
Chr02	irgsp1_rep	five_prime_UTR	4323522	4323891	.	-	.	Parent=Os02t0178250-00
Chr02	irgsp1_rep	five_prime_UTR	4321736	4321884	.	-	.	Parent=Os02t0178250-00
Chr02	irgsp1_rep	five_prime_UTR	4321052	4321629	.	-	.	Parent=Os02t0178250-00
Chr02	irgsp1_rep	CDS	4320692	4321051	.	-	0	Parent=Os02t0178250-00
Chr02	irgsp1_rep	three_prime_UTR	4320520	4320691	.	-	.	Parent=Os02t0178250-00
Chr02	irgsp1_rep	mRNA	4326102	4326332	.	-	.	ID=Os02t0178300-00;Name=Os02t0178300-00;Locus_id=Os02g0178300;Note=Non-protein coding transcript.;Transcript_evidence=CT835437 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os02t0178300-00
Chr02	irgsp1_rep	exon	4326102	4326332	.	-	.	Parent=Os02t0178300-00
Chr02	irgsp1_rep	mRNA	4332272	4334355	.	+	.	ID=Os02t0178400-01;Name=Os02t0178400-01;Locus_id=Os02g0178400;Note=Protein transport protein SEC61 gamma subunit.;Transcript_evidence=AK063815 (DDBJ%2C Best hit),AK121516 (DDBJ%2C Best hit);ORF_evidence=A2X1K6 (UniProt);GO=Biological Process: protein targeting (GO:0006605),Biological Process: intracellular protein transport (GO:0006886),Biological Process: protein transport (GO:0015031),Cellular Component: membrane (GO:0016020),Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450);InterPro=Protein translocase complex%2C SecE/Sec61-gamma subunit (IPR001901),Protein translocase SEC61 complex%2C  gamma subunit (IPR008158),Protein translocase SecE domain (IPR023391);NIAS_FLcDNA=001-121-H05,J033026A17;TENOR=Os02t0178400-01
Chr02	irgsp1_rep	five_prime_UTR	4332272	4332354	.	+	.	Parent=Os02t0178400-01
Chr02	irgsp1_rep	CDS	4332355	4332448	.	+	0	Parent=Os02t0178400-01
Chr02	irgsp1_rep	CDS	4332555	4332670	.	+	2	Parent=Os02t0178400-01
Chr02	irgsp1_rep	three_prime_UTR	4332671	4332683	.	+	.	Parent=Os02t0178400-01
Chr02	irgsp1_rep	three_prime_UTR	4334134	4334355	.	+	.	Parent=Os02t0178400-01
Chr02	irgsp1_rep	mRNA	4334610	4338102	.	-	.	ID=Os02t0178500-01;Name=Os02t0178500-01;Locus_id=Os02g0178500;Note=Similar to DEM2.;Transcript_evidence=AK102240 (DDBJ%2C Best hit);ORF_evidence=B6UCN7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Vacuolar import/degradation%2C Vid27-related (IPR013863),WD40/YVTN repeat-like-containing domain (IPR015943);NIAS_FLcDNA=J033088C24;Expression=AK102240;TENOR=Os02t0178500-01;KEGG=Os02t0178500-01
Chr02	irgsp1_rep	five_prime_UTR	4338011	4338102	.	-	.	Parent=Os02t0178500-01
Chr02	irgsp1_rep	CDS	4336343	4338010	.	-	0	Parent=Os02t0178500-01
Chr02	irgsp1_rep	CDS	4334899	4335180	.	-	0	Parent=Os02t0178500-01
Chr02	irgsp1_rep	three_prime_UTR	4334610	4334898	.	-	.	Parent=Os02t0178500-01
Chr02	irgsp1_rep	mRNA	4341415	4341927	.	-	.	ID=Os02t0178600-01;Name=Os02t0178600-01;Locus_id=Os02g0178600;Note=Similar to E3 ubiquitin ligase EL5 (EC 6.3.2.-).;Transcript_evidence=AK106315 (DDBJ%2C Best hit);ORF_evidence=NP_001147514.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=002-101-D10;Expression=AK106315;TENOR=Os02t0178600-01;KEGG=Os02t0178600-01
Chr02	irgsp1_rep	CDS	4341775	4341927	.	-	0	Parent=Os02t0178600-01
Chr02	irgsp1_rep	three_prime_UTR	4341415	4341774	.	-	.	Parent=Os02t0178600-01
Chr02	irgsp1_rep	mRNA	4350872	4351973	.	+	.	ID=Os02t0178700-01;Name=Os02t0178700-01;Locus_id=Os02g0178700;Oryzabase Gene Symbol Synonym(s)=OsbHLH157%2C bHLH157;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 157;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=AK110943 (DDBJ%2C Best hit);ORF_evidence=A3A3R9 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=002-173-H03;Oryzabase=15428;Expression=AK110943;TENOR=Os02t0178700-01;KEGG=Os02t0178700-01
Chr02	irgsp1_rep	five_prime_UTR	4350872	4350949	.	+	.	Parent=Os02t0178700-01
Chr02	irgsp1_rep	CDS	4350950	4351517	.	+	0	Parent=Os02t0178700-01
Chr02	irgsp1_rep	CDS	4351642	4351706	.	+	2	Parent=Os02t0178700-01
Chr02	irgsp1_rep	three_prime_UTR	4351707	4351973	.	+	.	Parent=Os02t0178700-01
Chr02	irgsp1_rep	mRNA	4355073	4362388	.	-	.	ID=Os02t0178800-01;Name=Os02t0178800-01;Locus_id=Os02g0178800;RAP-DB Gene Symbol Synonym(s)=OsGL1-2;RAP-DB Gene Name Synonym(s)=Glossy1-homologous gene 2;Oryzabase Gene Symbol Synonym(s)=OsGL1-2;Oryzabase Gene Name Synonym(s)=Glossy1-homologous gene 2;Note=Glossy1(GL1) homolog%2C Cuticular wax biosynthesis%2C Drought resistance;Transcript_evidence=AK066569;ORF_evidence=Q6ETL8;GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Fatty acid hydroxylase (IPR006694),NAD(P)-binding domain (IPR016040),Uncharacterised domain Wax2%2C C-terminal (IPR021940);NIAS_FLcDNA=J013070P03;Manual Curation=April 25%2C 2016;Literature_PMID=19322663;Oryzabase=15280;Expression=AK066569;TENOR=Os02t0178800-01;KEGG=Os02t0178800-01
Chr02	irgsp1_rep	five_prime_UTR	4362193	4362388	.	-	.	Parent=Os02t0178800-01
Chr02	irgsp1_rep	CDS	4362139	4362192	.	-	0	Parent=Os02t0178800-01
Chr02	irgsp1_rep	CDS	4361785	4362008	.	-	0	Parent=Os02t0178800-01
Chr02	irgsp1_rep	CDS	4360880	4361133	.	-	1	Parent=Os02t0178800-01
Chr02	irgsp1_rep	CDS	4359785	4360004	.	-	2	Parent=Os02t0178800-01
Chr02	irgsp1_rep	CDS	4359123	4359244	.	-	1	Parent=Os02t0178800-01
Chr02	irgsp1_rep	CDS	4358445	4358701	.	-	2	Parent=Os02t0178800-01
Chr02	irgsp1_rep	CDS	4357612	4357719	.	-	0	Parent=Os02t0178800-01
Chr02	irgsp1_rep	CDS	4356509	4356715	.	-	0	Parent=Os02t0178800-01
Chr02	irgsp1_rep	CDS	4356237	4356347	.	-	0	Parent=Os02t0178800-01
Chr02	irgsp1_rep	CDS	4355577	4355750	.	-	0	Parent=Os02t0178800-01
Chr02	irgsp1_rep	CDS	4355210	4355365	.	-	0	Parent=Os02t0178800-01
Chr02	irgsp1_rep	three_prime_UTR	4355073	4355209	.	-	.	Parent=Os02t0178800-01
Chr02	irgsp1_rep	mRNA	4371879	4371951	.	-	.	ID=Os02t0178901-00;Name=Os02t0178901-00;Locus_id=Os02g0178901;Note=Non-protein coding transcript.;Transcript_evidence=X06284 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0178901-00
Chr02	irgsp1_rep	exon	4371879	4371951	.	-	.	Parent=Os02t0178901-00
Chr02	irgsp1_rep	mRNA	4376788	4381767	.	+	.	ID=Os02t0179000-00;Name=Os02t0179000-00;Locus_id=Os02g0179000;Oryzabase Gene Symbol Synonym(s)=OsSTA49;Note=Similar to STE20/SPS1-related proline-alanine-rich protein kinase.;Transcript_evidence=BT039430 (DDBJ);ORF_evidence=NP_001147063.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=19353;TENOR=Os02t0179000-00;KEGG=Os02t0179000-00 (EC:2.7.11.1)
Chr02	irgsp1_rep	CDS	4376788	4377012	.	+	0	Parent=Os02t0179000-00
Chr02	irgsp1_rep	CDS	4378156	4378410	.	+	0	Parent=Os02t0179000-00
Chr02	irgsp1_rep	CDS	4378517	4378644	.	+	0	Parent=Os02t0179000-00
Chr02	irgsp1_rep	CDS	4378741	4378782	.	+	1	Parent=Os02t0179000-00
Chr02	irgsp1_rep	CDS	4378878	4378959	.	+	1	Parent=Os02t0179000-00
Chr02	irgsp1_rep	CDS	4379038	4379106	.	+	0	Parent=Os02t0179000-00
Chr02	irgsp1_rep	CDS	4379183	4379353	.	+	0	Parent=Os02t0179000-00
Chr02	irgsp1_rep	CDS	4379433	4379498	.	+	0	Parent=Os02t0179000-00
Chr02	irgsp1_rep	CDS	4379780	4379848	.	+	0	Parent=Os02t0179000-00
Chr02	irgsp1_rep	CDS	4379931	4380059	.	+	0	Parent=Os02t0179000-00
Chr02	irgsp1_rep	CDS	4380528	4380539	.	+	0	Parent=Os02t0179000-00
Chr02	irgsp1_rep	three_prime_UTR	4380540	4380729	.	+	.	Parent=Os02t0179000-00
Chr02	irgsp1_rep	three_prime_UTR	4381502	4381605	.	+	.	Parent=Os02t0179000-00
Chr02	irgsp1_rep	three_prime_UTR	4381719	4381767	.	+	.	Parent=Os02t0179000-00
Chr02	irgsp1_rep	mRNA	4384188	4387935	.	+	.	ID=Os02t0179100-01;Name=Os02t0179100-01;Locus_id=Os02g0179100;Note=Metal-dependent phosphohydrolase%2C HD region domain containing protein.;Transcript_evidence=AK058557 (DDBJ%2C Best hit);ORF_evidence=B6SZF6 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphoric diester hydrolase activity (GO:0008081),Molecular Function: metal ion binding (GO:0046872);InterPro=Metal-dependent phosphohydrolase%2C HD domain (IPR003607),Metal-dependent phosphohydrolase%2C HD subdomain (IPR006674),HD domain (IPR023279);NIAS_FLcDNA=001-017-D05;Expression=AK058557;TENOR=Os02t0179100-01;KEGG=Os02t0179100-01
Chr02	irgsp1_rep	five_prime_UTR	4384188	4384248	.	+	.	Parent=Os02t0179100-01
Chr02	irgsp1_rep	CDS	4384249	4384437	.	+	0	Parent=Os02t0179100-01
Chr02	irgsp1_rep	CDS	4384534	4384661	.	+	0	Parent=Os02t0179100-01
Chr02	irgsp1_rep	CDS	4384744	4384781	.	+	1	Parent=Os02t0179100-01
Chr02	irgsp1_rep	CDS	4385251	4385361	.	+	2	Parent=Os02t0179100-01
Chr02	irgsp1_rep	CDS	4386269	4386348	.	+	2	Parent=Os02t0179100-01
Chr02	irgsp1_rep	CDS	4386913	4386949	.	+	0	Parent=Os02t0179100-01
Chr02	irgsp1_rep	CDS	4387233	4387274	.	+	2	Parent=Os02t0179100-01
Chr02	irgsp1_rep	CDS	4387558	4387619	.	+	2	Parent=Os02t0179100-01
Chr02	irgsp1_rep	three_prime_UTR	4387620	4387935	.	+	.	Parent=Os02t0179100-01
Chr02	irgsp1_rep	mRNA	4390150	4393564	.	-	.	ID=Os02t0179200-01;Name=Os02t0179200-01;Locus_id=Os02g0179200;Note=Glutamine amidotransferase class-I domain containing protein.;Transcript_evidence=AK111348 (DDBJ%2C Best hit);ORF_evidence=A2X1L3 (UniProt);InterPro=Glutamine amidotransferase type 1 (IPR017926);NIAS_FLcDNA=002-181-G04;Expression=AK111348;TENOR=Os02t0179200-01;KEGG=Os02t0179200-01
Chr02	irgsp1_rep	five_prime_UTR	4393473	4393564	.	-	.	Parent=Os02t0179200-01
Chr02	irgsp1_rep	CDS	4393116	4393472	.	-	0	Parent=Os02t0179200-01
Chr02	irgsp1_rep	CDS	4392499	4392663	.	-	0	Parent=Os02t0179200-01
Chr02	irgsp1_rep	CDS	4391584	4391751	.	-	0	Parent=Os02t0179200-01
Chr02	irgsp1_rep	CDS	4390496	4390705	.	-	0	Parent=Os02t0179200-01
Chr02	irgsp1_rep	three_prime_UTR	4390150	4390495	.	-	.	Parent=Os02t0179200-01
Chr02	irgsp1_rep	mRNA	4390535	4393456	.	+	.	ID=Os02t0179225-00;Name=Os02t0179225-00;Locus_id=Os02g0179225;Note=Hypothetical protein.;Transcript_evidence=tplb0041h08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0179225-00
Chr02	irgsp1_rep	five_prime_UTR	4390535	4390704	.	+	.	Parent=Os02t0179225-00
Chr02	irgsp1_rep	five_prime_UTR	4391583	4392011	.	+	.	Parent=Os02t0179225-00
Chr02	irgsp1_rep	five_prime_UTR	4392362	4392517	.	+	.	Parent=Os02t0179225-00
Chr02	irgsp1_rep	CDS	4392518	4392659	.	+	0	Parent=Os02t0179225-00
Chr02	irgsp1_rep	CDS	4393112	4393456	.	+	2	Parent=Os02t0179225-00
Chr02	irgsp1_rep	mRNA	4394882	4398791	.	+	.	ID=Os02t0179250-01;Name=Os02t0179250-01;Locus_id=Os02g0179250;Note=Hypothetical gene.;Transcript_evidence=AK288796 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090070F05;TENOR=Os02t0179250-01;KEGG=Os02t0179250-01
Chr02	irgsp1_rep	five_prime_UTR	4394882	4395583	.	+	.	Parent=Os02t0179250-01
Chr02	irgsp1_rep	CDS	4395584	4395862	.	+	0	Parent=Os02t0179250-01
Chr02	irgsp1_rep	three_prime_UTR	4395863	4398791	.	+	.	Parent=Os02t0179250-01
Chr02	irgsp1_rep	mRNA	4407991	4412772	.	+	.	ID=Os02t0179300-01;Name=Os02t0179300-01;Locus_id=Os02g0179300;Oryzabase Gene Symbol Synonym(s)=Rad23;Note=Similar to RAD23 protein%2C isoform II.;Transcript_evidence=AK069065 (DDBJ%2C Best hit);ORF_evidence=B6T790 (UniProt);GO=Biological Process: nucleotide-excision repair (GO:0006289),Biological Process: proteasomal ubiquitin-dependent protein catabolic process (GO:0043161),Cellular Component: nucleus (GO:0005634),Molecular Function: damaged DNA binding (GO:0003684),Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal (IPR000449),Ubiquitin (IPR000626),UV excision repair protein Rad23 (IPR004806),Heat shock chaperonin-binding (IPR006636),UBA-like (IPR009060),XPC-binding domain (IPR015360),Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (IPR015940),Ubiquitin supergroup (IPR019955);NIAS_FLcDNA=J023007H17;Oryzabase=21267;Expression=AK069065;TENOR=Os02t0179300-01;KEGG=Os02t0179300-01
Chr02	irgsp1_rep	five_prime_UTR	4407991	4408231	.	+	.	Parent=Os02t0179300-01
Chr02	irgsp1_rep	CDS	4408232	4408297	.	+	0	Parent=Os02t0179300-01
Chr02	irgsp1_rep	CDS	4408938	4409099	.	+	0	Parent=Os02t0179300-01
Chr02	irgsp1_rep	CDS	4409759	4409797	.	+	0	Parent=Os02t0179300-01
Chr02	irgsp1_rep	CDS	4409873	4409940	.	+	0	Parent=Os02t0179300-01
Chr02	irgsp1_rep	CDS	4410027	4410071	.	+	1	Parent=Os02t0179300-01
Chr02	irgsp1_rep	CDS	4410481	4410658	.	+	1	Parent=Os02t0179300-01
Chr02	irgsp1_rep	CDS	4410743	4410874	.	+	0	Parent=Os02t0179300-01
Chr02	irgsp1_rep	CDS	4410947	4411012	.	+	0	Parent=Os02t0179300-01
Chr02	irgsp1_rep	CDS	4411501	4411548	.	+	0	Parent=Os02t0179300-01
Chr02	irgsp1_rep	CDS	4411657	4411766	.	+	0	Parent=Os02t0179300-01
Chr02	irgsp1_rep	CDS	4412047	4412128	.	+	1	Parent=Os02t0179300-01
Chr02	irgsp1_rep	CDS	4412235	4412348	.	+	0	Parent=Os02t0179300-01
Chr02	irgsp1_rep	three_prime_UTR	4412349	4412367	.	+	.	Parent=Os02t0179300-01
Chr02	irgsp1_rep	three_prime_UTR	4412469	4412772	.	+	.	Parent=Os02t0179300-01
Chr02	irgsp1_rep	mRNA	4409077	4412723	.	+	.	ID=Os02t0179300-02;Name=Os02t0179300-02;Locus_id=Os02g0179300;Oryzabase Gene Symbol Synonym(s)=Rad23;Note=Similar to DNA repair protein RAD23-1.;Transcript_evidence=AK104908 (DDBJ%2C Best hit);ORF_evidence=B6T790 (UniProt);GO=Biological Process: nucleotide-excision repair (GO:0006289),Biological Process: proteasomal ubiquitin-dependent protein catabolic process (GO:0043161),Cellular Component: nucleus (GO:0005634),Molecular Function: damaged DNA binding (GO:0003684),Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal (IPR000449),UV excision repair protein Rad23 (IPR004806),Heat shock chaperonin-binding (IPR006636),UBA-like (IPR009060),XPC-binding domain (IPR015360),Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (IPR015940);NIAS_FLcDNA=001-046-H06;Oryzabase=21267;Expression=AK104908;TENOR=Os02t0179300-02;KEGG=Os02t0179300-02
Chr02	irgsp1_rep	five_prime_UTR	4409077	4409078	.	+	.	Parent=Os02t0179300-02
Chr02	irgsp1_rep	CDS	4409079	4409099	.	+	0	Parent=Os02t0179300-02
Chr02	irgsp1_rep	CDS	4409759	4409797	.	+	0	Parent=Os02t0179300-02
Chr02	irgsp1_rep	CDS	4409873	4409940	.	+	0	Parent=Os02t0179300-02
Chr02	irgsp1_rep	CDS	4410027	4410071	.	+	1	Parent=Os02t0179300-02
Chr02	irgsp1_rep	CDS	4410481	4410658	.	+	1	Parent=Os02t0179300-02
Chr02	irgsp1_rep	CDS	4410743	4410874	.	+	0	Parent=Os02t0179300-02
Chr02	irgsp1_rep	CDS	4410947	4411012	.	+	0	Parent=Os02t0179300-02
Chr02	irgsp1_rep	CDS	4411501	4411548	.	+	0	Parent=Os02t0179300-02
Chr02	irgsp1_rep	CDS	4411657	4411766	.	+	0	Parent=Os02t0179300-02
Chr02	irgsp1_rep	CDS	4412047	4412128	.	+	1	Parent=Os02t0179300-02
Chr02	irgsp1_rep	CDS	4412235	4412348	.	+	0	Parent=Os02t0179300-02
Chr02	irgsp1_rep	three_prime_UTR	4412349	4412367	.	+	.	Parent=Os02t0179300-02
Chr02	irgsp1_rep	three_prime_UTR	4412469	4412723	.	+	.	Parent=Os02t0179300-02
Chr02	irgsp1_rep	mRNA	4413010	4415318	.	-	.	ID=Os02t0179400-00;Name=Os02t0179400-00;Locus_id=Os02g0179400;Oryzabase Gene Symbol Synonym(s)=OsTLP13%2C OsTLP4;Oryzabase Gene Name Synonym(s)=Tubby-like protein 4%2C tubby-like protein 13;Note=Similar to Tubby-like protein 13.;Transcript_evidence=AK376287 (DDBJ);ORF_evidence=D2CMM7 (UniProt);InterPro=Tubby%2C C-terminal (IPR000007);Oryzabase=12404;TENOR=Os02t0179400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	4414467	4415318	.	-	0	Parent=Os02t0179400-00
Chr02	irgsp1_rep	CDS	4414206	4414382	.	-	0	Parent=Os02t0179400-00
Chr02	irgsp1_rep	CDS	4413986	4414041	.	-	0	Parent=Os02t0179400-00
Chr02	irgsp1_rep	CDS	4413783	4413889	.	-	1	Parent=Os02t0179400-00
Chr02	irgsp1_rep	CDS	4413637	4413686	.	-	2	Parent=Os02t0179400-00
Chr02	irgsp1_rep	three_prime_UTR	4413603	4413636	.	-	.	Parent=Os02t0179400-00
Chr02	irgsp1_rep	three_prime_UTR	4413390	4413485	.	-	.	Parent=Os02t0179400-00
Chr02	irgsp1_rep	three_prime_UTR	4413204	4413271	.	-	.	Parent=Os02t0179400-00
Chr02	irgsp1_rep	three_prime_UTR	4413010	4413094	.	-	.	Parent=Os02t0179400-00
Chr02	irgsp1_rep	mRNA	4420302	4424004	.	-	.	ID=Os02t0179450-00;Name=Os02t0179450-00;Locus_id=Os02g0179450;Note=Non-protein coding transcript.;Transcript_evidence=BT019264 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0179450-00
Chr02	irgsp1_rep	exon	4423308	4424004	.	-	.	Parent=Os02t0179450-00
Chr02	irgsp1_rep	exon	4420302	4420551	.	-	.	Parent=Os02t0179450-00
Chr02	irgsp1_rep	mRNA	4423146	4424225	.	+	.	ID=Os02t0179500-01;Name=Os02t0179500-01;Locus_id=Os02g0179500;Note=Hly-III related domain containing protein.;Transcript_evidence=AK110722 (DDBJ%2C Best hit);ORF_evidence=B6TSK1 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Hly-III-related (IPR004254);NIAS_FLcDNA=002-170-E01;Expression=AK110722;TENOR=Os02t0179500-01;KEGG=Os02t0179500-01
Chr02	irgsp1_rep	five_prime_UTR	4423146	4423333	.	+	.	Parent=Os02t0179500-01
Chr02	irgsp1_rep	CDS	4423334	4424023	.	+	0	Parent=Os02t0179500-01
Chr02	irgsp1_rep	three_prime_UTR	4424024	4424225	.	+	.	Parent=Os02t0179500-01
Chr02	irgsp1_rep	mRNA	4424449	4426620	.	-	.	ID=Os02t0179600-01;Name=Os02t0179600-01;Locus_id=Os02g0179600;Note=Uncharacterized conserved protein UCP015417%2C  vWA domain containing protein.;Transcript_evidence=AK110418 (DDBJ%2C Best hit);ORF_evidence=A2X1L7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=von Willebrand factor%2C type A (IPR002035),Uncharacterised conserved protein UCP015417%2C vWA (IPR011205),Domain of unknown function DUF2828 (IPR024553);NIAS_FLcDNA=002-165-H08;Expression=AK110418;TENOR=Os02t0179600-01;KEGG=Os02t0179600-01
Chr02	irgsp1_rep	five_prime_UTR	4426539	4426620	.	-	.	Parent=Os02t0179600-01
Chr02	irgsp1_rep	CDS	4424568	4426538	.	-	0	Parent=Os02t0179600-01
Chr02	irgsp1_rep	three_prime_UTR	4424449	4424567	.	-	.	Parent=Os02t0179600-01
Chr02	irgsp1_rep	mRNA	4432918	4438267	.	-	.	ID=Os02t0179800-00;Name=Os02t0179800-00;Locus_id=Os02g0179800;Note=Integrase%2C N-terminal zinc-binding domain domain containing protein.;Transcript_evidence=AK365876 (DDBJ);ORF_evidence=Q6ETK7 (UniProt);GO=Biological Process: autophagy (GO:0006914),Molecular Function: zinc ion binding (GO:0008270);InterPro=Integrase%2C N-terminal zinc-binding domain (IPR003308),Autophagy-related protein 17 (IPR007240),Autophagy-related protein 11 (IPR019460);TENOR=Os02t0179800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	4438117	4438267	.	-	.	Parent=Os02t0179800-00
Chr02	irgsp1_rep	CDS	4437140	4438116	.	-	0	Parent=Os02t0179800-00
Chr02	irgsp1_rep	CDS	4434885	4436559	.	-	1	Parent=Os02t0179800-00
Chr02	irgsp1_rep	CDS	4434572	4434789	.	-	0	Parent=Os02t0179800-00
Chr02	irgsp1_rep	CDS	4433674	4433863	.	-	1	Parent=Os02t0179800-00
Chr02	irgsp1_rep	CDS	4433108	4433470	.	-	0	Parent=Os02t0179800-00
Chr02	irgsp1_rep	three_prime_UTR	4432918	4433107	.	-	.	Parent=Os02t0179800-00
Chr02	irgsp1_rep	mRNA	4440186	4448543	.	+	.	ID=Os02t0179900-01;Name=Os02t0179900-01;Locus_id=Os02g0179900;Note=Similar to Negative elongation factor E (NELF-E) (RD protein). Splice isoform 2.;Transcript_evidence=AK067511 (DDBJ%2C Best hit);ORF_evidence=Q6ETK5 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013110H05;Expression=AK067511;TENOR=Os02t0179900-01;KEGG=Os02t0179900-01
Chr02	irgsp1_rep	five_prime_UTR	4440186	4440359	.	+	.	Parent=Os02t0179900-01
Chr02	irgsp1_rep	five_prime_UTR	4440630	4440696	.	+	.	Parent=Os02t0179900-01
Chr02	irgsp1_rep	five_prime_UTR	4440797	4440929	.	+	.	Parent=Os02t0179900-01
Chr02	irgsp1_rep	five_prime_UTR	4441078	4442435	.	+	.	Parent=Os02t0179900-01
Chr02	irgsp1_rep	CDS	4442436	4442756	.	+	0	Parent=Os02t0179900-01
Chr02	irgsp1_rep	CDS	4443341	4443460	.	+	0	Parent=Os02t0179900-01
Chr02	irgsp1_rep	CDS	4443552	4443717	.	+	0	Parent=Os02t0179900-01
Chr02	irgsp1_rep	CDS	4443825	4443937	.	+	2	Parent=Os02t0179900-01
Chr02	irgsp1_rep	CDS	4446822	4446824	.	+	0	Parent=Os02t0179900-01
Chr02	irgsp1_rep	three_prime_UTR	4446825	4447433	.	+	.	Parent=Os02t0179900-01
Chr02	irgsp1_rep	three_prime_UTR	4447551	4447726	.	+	.	Parent=Os02t0179900-01
Chr02	irgsp1_rep	three_prime_UTR	4447914	4448543	.	+	.	Parent=Os02t0179900-01
Chr02	irgsp1_rep	mRNA	4440636	4448187	.	-	.	ID=Os02t0179950-00;Name=Os02t0179950-00;Locus_id=Os02g0179950;Note=Hypothetical protein.;Transcript_evidence=tplb0059a08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0179950-00
Chr02	irgsp1_rep	five_prime_UTR	4447900	4448187	.	-	.	Parent=Os02t0179950-00
Chr02	irgsp1_rep	five_prime_UTR	4447552	4447718	.	-	.	Parent=Os02t0179950-00
Chr02	irgsp1_rep	five_prime_UTR	4446644	4447434	.	-	.	Parent=Os02t0179950-00
Chr02	irgsp1_rep	five_prime_UTR	4446347	4446552	.	-	.	Parent=Os02t0179950-00
Chr02	irgsp1_rep	five_prime_UTR	4445972	4446139	.	-	.	Parent=Os02t0179950-00
Chr02	irgsp1_rep	five_prime_UTR	4445810	4445876	.	-	.	Parent=Os02t0179950-00
Chr02	irgsp1_rep	five_prime_UTR	4445617	4445698	.	-	.	Parent=Os02t0179950-00
Chr02	irgsp1_rep	five_prime_UTR	4444993	4445198	.	-	.	Parent=Os02t0179950-00
Chr02	irgsp1_rep	five_prime_UTR	4444060	4444120	.	-	.	Parent=Os02t0179950-00
Chr02	irgsp1_rep	five_prime_UTR	4443823	4443940	.	-	.	Parent=Os02t0179950-00
Chr02	irgsp1_rep	five_prime_UTR	4443677	4443715	.	-	.	Parent=Os02t0179950-00
Chr02	irgsp1_rep	CDS	4443558	4443676	.	-	0	Parent=Os02t0179950-00
Chr02	irgsp1_rep	CDS	4443329	4443469	.	-	1	Parent=Os02t0179950-00
Chr02	irgsp1_rep	CDS	4442602	4442742	.	-	1	Parent=Os02t0179950-00
Chr02	irgsp1_rep	CDS	4442498	4442522	.	-	1	Parent=Os02t0179950-00
Chr02	irgsp1_rep	three_prime_UTR	4442454	4442497	.	-	.	Parent=Os02t0179950-00
Chr02	irgsp1_rep	three_prime_UTR	4440795	4440910	.	-	.	Parent=Os02t0179950-00
Chr02	irgsp1_rep	three_prime_UTR	4440636	4440694	.	-	.	Parent=Os02t0179950-00
Chr02	irgsp1_rep	mRNA	4450273	4454802	.	+	.	ID=Os02t0180000-01;Name=Os02t0180000-01;Locus_id=Os02g0180000;Oryzabase Gene Symbol Synonym(s)=OsPP2C11%2C PP2C11%2C OsPP19;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C11%2C protein phosphatase 2C 11%2C protein phosphatase 19;Note=Similar to Protein phosphatase type-2C.;Transcript_evidence=AK120521 (DDBJ%2C Best hit);ORF_evidence=NP_001149401.1 (RefSeq);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J013124L22;Oryzabase=17888;Expression=AK120521;TENOR=Os02t0180000-01;KEGG=Os02t0180000-01 (EC:3.1.3.16)
Chr02	irgsp1_rep	five_prime_UTR	4450273	4450484	.	+	.	Parent=Os02t0180000-01
Chr02	irgsp1_rep	five_prime_UTR	4451382	4451494	.	+	.	Parent=Os02t0180000-01
Chr02	irgsp1_rep	five_prime_UTR	4451621	4451629	.	+	.	Parent=Os02t0180000-01
Chr02	irgsp1_rep	CDS	4451630	4451746	.	+	0	Parent=Os02t0180000-01
Chr02	irgsp1_rep	CDS	4452200	4452263	.	+	0	Parent=Os02t0180000-01
Chr02	irgsp1_rep	CDS	4452389	4452497	.	+	2	Parent=Os02t0180000-01
Chr02	irgsp1_rep	CDS	4452610	4452763	.	+	1	Parent=Os02t0180000-01
Chr02	irgsp1_rep	CDS	4452843	4452968	.	+	0	Parent=Os02t0180000-01
Chr02	irgsp1_rep	CDS	4453058	4453181	.	+	0	Parent=Os02t0180000-01
Chr02	irgsp1_rep	CDS	4453260	4453336	.	+	2	Parent=Os02t0180000-01
Chr02	irgsp1_rep	CDS	4453445	4453497	.	+	0	Parent=Os02t0180000-01
Chr02	irgsp1_rep	CDS	4453676	4453730	.	+	1	Parent=Os02t0180000-01
Chr02	irgsp1_rep	CDS	4453836	4454020	.	+	0	Parent=Os02t0180000-01
Chr02	irgsp1_rep	CDS	4454113	4454137	.	+	1	Parent=Os02t0180000-01
Chr02	irgsp1_rep	three_prime_UTR	4454138	4454219	.	+	.	Parent=Os02t0180000-01
Chr02	irgsp1_rep	three_prime_UTR	4454260	4454802	.	+	.	Parent=Os02t0180000-01
Chr02	irgsp1_rep	mRNA	4455016	4457715	.	-	.	ID=Os02t0180100-01;Name=Os02t0180100-01;Locus_id=Os02g0180100;CGSNL Gene Symbol=UCH1%2C UCH2;CGSNL Gene Name=UBIQUITIN C-TERMINAL HYDROLASE 1%2C UBIQUITIN C-TERMINAL HYDROLASE 2;Oryzabase Gene Symbol Synonym(s)=OsUCH1%2C OsUCH2;Oryzabase Gene Name Synonym(s)=ubiquitin C-terminal hydrolase 1%2C ubiquitin C-terminal hydrolase 2;Note=Peptidase C12%2C ubiquitin carboxyl-terminal hydrolase 1 family protein.;Transcript_evidence=AK104700 (DDBJ%2C Best hit),AK067359 (DDBJ%2C Best hit);ORF_evidence=NP_564858.1 (RefSeq);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Cellular Component: intracellular (GO:0005622),Molecular Function: ubiquitin thiolesterase activity (GO:0004221),Molecular Function: omega peptidase activity (GO:0008242);InterPro=Peptidase C12%2C ubiquitin carboxyl-terminal hydrolase 1 (IPR001578),Ubiquitinyl hydrolase%2C UCH37 type (IPR017390);NIAS_FLcDNA=001-037-C05,J013099P19;Oryzabase=22859,22860;Expression=AK104700;TENOR=Os02t0180100-01;KEGG=Os02t0180100-01 (EC:3.4.19.12)
Chr02	irgsp1_rep	five_prime_UTR	4457522	4457715	.	-	.	Parent=Os02t0180100-01
Chr02	irgsp1_rep	five_prime_UTR	4457333	4457367	.	-	.	Parent=Os02t0180100-01
Chr02	irgsp1_rep	CDS	4457302	4457332	.	-	0	Parent=Os02t0180100-01
Chr02	irgsp1_rep	CDS	4456569	4456615	.	-	2	Parent=Os02t0180100-01
Chr02	irgsp1_rep	CDS	4456179	4456225	.	-	0	Parent=Os02t0180100-01
Chr02	irgsp1_rep	CDS	4456002	4456101	.	-	1	Parent=Os02t0180100-01
Chr02	irgsp1_rep	CDS	4455154	4455918	.	-	0	Parent=Os02t0180100-01
Chr02	irgsp1_rep	three_prime_UTR	4455016	4455153	.	-	.	Parent=Os02t0180100-01
Chr02	irgsp1_rep	mRNA	4460342	4463571	.	+	.	ID=Os02t0180200-01;Name=Os02t0180200-01;Locus_id=Os02g0180200;Note=Uncharacterised protein family UPF0133 domain containing protein.;Transcript_evidence=AK103796 (DDBJ%2C Best hit);ORF_evidence=Q8LDX3 (UniProt);InterPro=Uncharacterised protein family UPF0133 (IPR004401);NIAS_FLcDNA=J033145P14;Expression=AK103796;TENOR=Os02t0180200-01;KEGG=Os02t0180200-01
Chr02	irgsp1_rep	five_prime_UTR	4460342	4460401	.	+	.	Parent=Os02t0180200-01
Chr02	irgsp1_rep	CDS	4460402	4460474	.	+	0	Parent=Os02t0180200-01
Chr02	irgsp1_rep	CDS	4461252	4461391	.	+	2	Parent=Os02t0180200-01
Chr02	irgsp1_rep	CDS	4461970	4462070	.	+	0	Parent=Os02t0180200-01
Chr02	irgsp1_rep	CDS	4462153	4462192	.	+	1	Parent=Os02t0180200-01
Chr02	irgsp1_rep	CDS	4462951	4463022	.	+	0	Parent=Os02t0180200-01
Chr02	irgsp1_rep	CDS	4463211	4463267	.	+	0	Parent=Os02t0180200-01
Chr02	irgsp1_rep	CDS	4463350	4463424	.	+	0	Parent=Os02t0180200-01
Chr02	irgsp1_rep	three_prime_UTR	4463425	4463571	.	+	.	Parent=Os02t0180200-01
Chr02	irgsp1_rep	mRNA	4481872	4483470	.	+	.	ID=Os02t0180400-00;Name=Os02t0180400-00;Locus_id=Os02g0180400;Note=GCN5-related N-acetyltransferase (GNAT) domain domain containing protein.;Transcript_evidence=AK355812 (DDBJ);ORF_evidence=Q6H820 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: N-acetyltransferase activity (GO:0008080);InterPro=GCN5-related N-acetyltransferase (GNAT) domain (IPR000182),Acyl-CoA N-acyltransferase (IPR016181);TENOR=Os02t0180400-00
Chr02	irgsp1_rep	CDS	4481872	4482114	.	+	0	Parent=Os02t0180400-00
Chr02	irgsp1_rep	CDS	4482318	4482475	.	+	0	Parent=Os02t0180400-00
Chr02	irgsp1_rep	CDS	4482606	4483470	.	+	1	Parent=Os02t0180400-00
Chr02	irgsp1_rep	mRNA	4486531	4489409	.	-	.	ID=Os02t0180500-01;Name=Os02t0180500-01;Locus_id=Os02g0180500;Note=Similar to Chorismate mutase CM2 (EC 5.4.99.5) (Chorimate mutase).;Transcript_evidence=AK101220 (DDBJ%2C Best hit);ORF_evidence=B4FUP5 (UniProt);GO=Biological Process: aromatic amino acid family biosynthetic process (GO:0009073),Biological Process: chorismate metabolic process (GO:0046417),Molecular Function: chorismate mutase activity (GO:0004106);InterPro=Chorismate mutase%2C AroQ class%2C eukaryotic type (IPR008238),Chorismate mutase%2C type II (IPR020822);NIAS_FLcDNA=J033031C20;Expression=AK101220;TENOR=Os02t0180500-01;KEGG=Os02t0180500-01 (EC:5.4.99.5)
Chr02	irgsp1_rep	five_prime_UTR	4489332	4489409	.	-	.	Parent=Os02t0180500-01
Chr02	irgsp1_rep	CDS	4489140	4489331	.	-	0	Parent=Os02t0180500-01
Chr02	irgsp1_rep	CDS	4488182	4488268	.	-	0	Parent=Os02t0180500-01
Chr02	irgsp1_rep	CDS	4487951	4488094	.	-	0	Parent=Os02t0180500-01
Chr02	irgsp1_rep	CDS	4487652	4487744	.	-	0	Parent=Os02t0180500-01
Chr02	irgsp1_rep	CDS	4487117	4487368	.	-	0	Parent=Os02t0180500-01
Chr02	irgsp1_rep	three_prime_UTR	4486531	4487116	.	-	.	Parent=Os02t0180500-01
Chr02	irgsp1_rep	mRNA	4497115	4500124	.	+	.	ID=Os02t0180700-01;Name=Os02t0180700-01;Locus_id=Os02g0180700;CGSNL Gene Symbol=CCR21;CGSNL Gene Name=CINNAMOYL-COA REDUCTASE 21;Oryzabase Gene Symbol Synonym(s)=OsCCR21;Oryzabase Gene Name Synonym(s)=cinnamoyl CoA reductase 21;Note=Similar to Cinnamoyl-CoA reductase (EC 1.2.1.44).;Transcript_evidence=AK070746 (DDBJ%2C Best hit);ORF_evidence=NP_001151927.1 (RefSeq);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023064M01;Oryzabase=16722;Expression=AK070746;TENOR=Os02t0180700-01;KEGG=Os02t0180700-01 (EC:1.2.1.44)
Chr02	irgsp1_rep	five_prime_UTR	4497115	4497212	.	+	.	Parent=Os02t0180700-01
Chr02	irgsp1_rep	CDS	4497213	4497324	.	+	0	Parent=Os02t0180700-01
Chr02	irgsp1_rep	CDS	4497418	4497572	.	+	2	Parent=Os02t0180700-01
Chr02	irgsp1_rep	CDS	4497640	4497825	.	+	0	Parent=Os02t0180700-01
Chr02	irgsp1_rep	CDS	4498221	4498576	.	+	0	Parent=Os02t0180700-01
Chr02	irgsp1_rep	CDS	4499454	4499613	.	+	1	Parent=Os02t0180700-01
Chr02	irgsp1_rep	CDS	4499858	4499923	.	+	0	Parent=Os02t0180700-01
Chr02	irgsp1_rep	three_prime_UTR	4499924	4500124	.	+	.	Parent=Os02t0180700-01
Chr02	irgsp1_rep	mRNA	4500090	4513333	.	-	.	ID=Os02t0180800-01;Name=Os02t0180800-01;Locus_id=Os02g0180800;RAP-DB Gene Symbol Synonym(s)=OsmiR156d;Note=Primary microRNA of OsmiR156d%3B Target gene(s): SPL (Squamosa Promoter binding protein Like) gene family (Os07g0505200%2C Os02g0139400%2C Os01g0922600%2C Os08g0509600%2C Os08g0531600%2C Os09g0491532%2C Os09g0507100%2C Os02g0174100%2C Os06g0663500%2C Os06g0703500%2C Os04g0551500)%2C Various developmental processes%2C especially flower development;Transcript_evidence=AK073452;ORF_evidence=NONE;NIAS_FLcDNA=J033045J24;Manual Curation=November 22%2C 2017;Literature_PMID=16861571;TENOR=Os02t0180800-01
Chr02	irgsp1_rep	exon	4512536	4513333	.	-	.	Parent=Os02t0180800-01
Chr02	irgsp1_rep	exon	4512129	4512445	.	-	.	Parent=Os02t0180800-01
Chr02	irgsp1_rep	exon	4511746	4511809	.	-	.	Parent=Os02t0180800-01
Chr02	irgsp1_rep	exon	4511098	4511191	.	-	.	Parent=Os02t0180800-01
Chr02	irgsp1_rep	exon	4500090	4500421	.	-	.	Parent=Os02t0180800-01
Chr02	irgsp1_rep	mRNA	4521670	4523668	.	+	.	ID=Os02t0180900-01;Name=Os02t0180900-01;Locus_id=Os02g0180900;Note=Hypothetical protein.;Transcript_evidence=AK064416 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-110-B01;Expression=AK064416;TENOR=Os02t0180900-01;KEGG=Os02t0180900-01
Chr02	irgsp1_rep	five_prime_UTR	4521670	4523271	.	+	.	Parent=Os02t0180900-01
Chr02	irgsp1_rep	CDS	4523272	4523511	.	+	0	Parent=Os02t0180900-01
Chr02	irgsp1_rep	three_prime_UTR	4523512	4523668	.	+	.	Parent=Os02t0180900-01
Chr02	irgsp1_rep	mRNA	4543013	4543405	.	-	.	ID=Os02t0181200-00;Name=Os02t0181200-00;Locus_id=Os02g0181200;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os02t0181200-00
Chr02	irgsp1_rep	CDS	4543013	4543405	.	-	0	Parent=Os02t0181200-00
Chr02	irgsp1_rep	mRNA	4542938	4544874	.	+	.	ID=Os02t0181300-01;Name=Os02t0181300-01;Locus_id=Os02g0181300;RAP-DB Gene Symbol Synonym(s)=WRKY71%2C OsWRKY71;RAP-DB Gene Name Synonym(s)=WRKY GENE 71%2C Rice WRKY gene71%2C Rice WRKY gene 71%2C Transcription factor WRKY71;CGSNL Gene Symbol=WRKY71;CGSNL Gene Name=WRKY GENE 71;Oryzabase Gene Symbol Synonym(s)=OsWRKY71%2C WRKY-71;Oryzabase Gene Name Synonym(s)=Rice WRKY gene71%2C Rice WRKY gene 71%2C Transcription factor WRKY71;Note=WRKY transcription factor%2C Defense response;Transcript_evidence=AB190817,AY676927 (Guang Lu Ai);ORF_evidence=Q6QHD1;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=WRKY domain (IPR003657);Manual Curation=February 10%2C 2016;Literature_PMID=18175928,16919842,Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6304;TENOR=Os02t0181300-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	4542938	4543033	.	+	.	Parent=Os02t0181300-01
Chr02	irgsp1_rep	CDS	4543034	4543180	.	+	0	Parent=Os02t0181300-01
Chr02	irgsp1_rep	CDS	4543290	4543712	.	+	0	Parent=Os02t0181300-01
Chr02	irgsp1_rep	CDS	4543839	4543955	.	+	0	Parent=Os02t0181300-01
Chr02	irgsp1_rep	CDS	4544067	4544426	.	+	0	Parent=Os02t0181300-01
Chr02	irgsp1_rep	three_prime_UTR	4544427	4544874	.	+	.	Parent=Os02t0181300-01
Chr02	irgsp1_rep	mRNA	4551426	4552860	.	-	.	ID=Os02t0181400-00;Name=Os02t0181400-00;Locus_id=Os02g0181400;CGSNL Gene Symbol=MSL10;CGSNL Gene Name=MYB/SANT-LIKE 10;Oryzabase Gene Symbol Synonym(s)=OsMSL10%2C MSL10;Oryzabase Gene Name Synonym(s)=Myb/SANT-LIKE 10;Note=Hypothetical conserved gene.;Transcript_evidence=EU969963 (DDBJ);ORF_evidence=B9F3E4 (UniProt);InterPro=Myb/SANT-like domain (IPR024752);Oryzabase=22952;TENOR=Os02t0181400-00;KEGG=Os02t0181400-00
Chr02	irgsp1_rep	five_prime_UTR	4552491	4552860	.	-	.	Parent=Os02t0181400-00
Chr02	irgsp1_rep	five_prime_UTR	4552378	4552378	.	-	.	Parent=Os02t0181400-00
Chr02	irgsp1_rep	CDS	4552069	4552377	.	-	0	Parent=Os02t0181400-00
Chr02	irgsp1_rep	CDS	4551426	4551983	.	-	0	Parent=Os02t0181400-00
Chr02	irgsp1_rep	mRNA	4558797	4559941	.	+	.	ID=Os02t0181700-00;Name=Os02t0181700-00;Locus_id=Os02g0181700;Note=Conserved hypothetical protein.;Transcript_evidence=EU958283 (DDBJ);ORF_evidence=Q6H807 (UniProt);TENOR=Os02t0181700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	4558797	4558841	.	+	.	Parent=Os02t0181700-00
Chr02	irgsp1_rep	CDS	4558842	4559205	.	+	0	Parent=Os02t0181700-00
Chr02	irgsp1_rep	CDS	4559294	4559598	.	+	2	Parent=Os02t0181700-00
Chr02	irgsp1_rep	three_prime_UTR	4559599	4559941	.	+	.	Parent=Os02t0181700-00
Chr02	irgsp1_rep	mRNA	4563073	4566597	.	+	.	ID=Os02t0181800-01;Name=Os02t0181800-01;Locus_id=Os02g0181800;Note=Similar to Ubiquitin fusion degradation 1-like.;Transcript_evidence=AK121784 (DDBJ%2C Best hit);ORF_evidence=B9VTA2 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);InterPro=Ubiquitin fusion degradation protein UFD1 (IPR004854);NIAS_FLcDNA=J033094A11;Expression=AK121784;TENOR=Os02t0181800-01;KEGG=Os02t0181800-01
Chr02	irgsp1_rep	five_prime_UTR	4563073	4563249	.	+	.	Parent=Os02t0181800-01
Chr02	irgsp1_rep	five_prime_UTR	4563985	4563991	.	+	.	Parent=Os02t0181800-01
Chr02	irgsp1_rep	CDS	4563992	4564021	.	+	0	Parent=Os02t0181800-01
Chr02	irgsp1_rep	CDS	4564169	4564246	.	+	0	Parent=Os02t0181800-01
Chr02	irgsp1_rep	CDS	4564767	4564791	.	+	0	Parent=Os02t0181800-01
Chr02	irgsp1_rep	CDS	4564873	4564905	.	+	2	Parent=Os02t0181800-01
Chr02	irgsp1_rep	CDS	4565037	4565158	.	+	2	Parent=Os02t0181800-01
Chr02	irgsp1_rep	CDS	4565233	4565363	.	+	0	Parent=Os02t0181800-01
Chr02	irgsp1_rep	CDS	4565512	4565735	.	+	1	Parent=Os02t0181800-01
Chr02	irgsp1_rep	CDS	4565827	4566068	.	+	2	Parent=Os02t0181800-01
Chr02	irgsp1_rep	CDS	4566271	4566360	.	+	0	Parent=Os02t0181800-01
Chr02	irgsp1_rep	three_prime_UTR	4566361	4566597	.	+	.	Parent=Os02t0181800-01
Chr02	irgsp1_rep	mRNA	4567630	4573049	.	-	.	ID=Os02t0181900-01;Name=Os02t0181900-01;Locus_id=Os02g0181900;CGSNL Gene Symbol=CLPB-M;CGSNL Gene Name=CLASS I CLP ATPASE B-M;Oryzabase Gene Symbol Synonym(s)=ClpB-m%2C OsClpB-m;Oryzabase Gene Name Synonym(s)=class I Clp ATPase B-M%2C ClpB-mitochondrial%2C ClpB/Hsp100 mitochondrial isoform;Note=Similar to ClpB.;Transcript_evidence=AK287906 (DDBJ%2C Best hit);ORF_evidence=E4MX40 (UniProt);GO=Biological Process: response to heat (GO:0009408),Biological Process: protein processing (GO:0016485),Biological Process: protein metabolic process (GO:0019538),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=Chaperonin ClpA/B (IPR001270),ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),Clp%2C N-terminal (IPR004176),ATPase%2C AAA-2 (IPR013093),Chaperonin ClpB (IPR017730),Chaperonin ClpA/B%2C conserved site (IPR018368),Clp ATPase%2C C-terminal (IPR019489),Double Clp-N motif (IPR023150);NIAS_FLcDNA=J065212D20;Oryzabase=8945;TENOR=Os02t0181900-01;KEGG=Os02t0181900-01
Chr02	irgsp1_rep	five_prime_UTR	4572914	4573049	.	-	.	Parent=Os02t0181900-01
Chr02	irgsp1_rep	CDS	4572632	4572913	.	-	0	Parent=Os02t0181900-01
Chr02	irgsp1_rep	CDS	4571881	4572099	.	-	0	Parent=Os02t0181900-01
Chr02	irgsp1_rep	CDS	4571563	4571800	.	-	0	Parent=Os02t0181900-01
Chr02	irgsp1_rep	CDS	4571140	4571335	.	-	2	Parent=Os02t0181900-01
Chr02	irgsp1_rep	CDS	4570961	4571015	.	-	1	Parent=Os02t0181900-01
Chr02	irgsp1_rep	CDS	4570500	4570650	.	-	0	Parent=Os02t0181900-01
Chr02	irgsp1_rep	CDS	4569665	4569973	.	-	2	Parent=Os02t0181900-01
Chr02	irgsp1_rep	CDS	4569304	4569569	.	-	2	Parent=Os02t0181900-01
Chr02	irgsp1_rep	CDS	4568283	4569212	.	-	0	Parent=Os02t0181900-01
Chr02	irgsp1_rep	CDS	4567842	4568147	.	-	0	Parent=Os02t0181900-01
Chr02	irgsp1_rep	three_prime_UTR	4567630	4567841	.	-	.	Parent=Os02t0181900-01
Chr02	irgsp1_rep	mRNA	4573831	4578257	.	-	.	ID=Os02t0182100-01;Name=Os02t0182100-01;Locus_id=Os02g0182100;RAP-DB Gene Symbol Synonym(s)=RR24%2C OsRR24%2C Rrb2%2C Orr4%2C OsRR17%2C OsRRB2%2C DLC1;RAP-DB Gene Name Synonym(s)=B-TYPE RESPONSE REGULATOR 4%2C B-type response regulator 4%2C B-type RR 2%2C Defective Leptotene Chromosome 1;CGSNL Gene Symbol=DLC1;CGSNL Gene Name=DEFECTIVE LEPTOTENE CHROMOSOME 1;Oryzabase Gene Symbol Synonym(s)=RR24%2C OsRR24%2C Rrb2%2C Orr4%2C OsRR17%2C OsRRB2%2C OsRR24/LEPTO1%2C OsLEPTO1%2C LEPTO1%2C OsDLC1;Oryzabase Gene Name Synonym(s)=B-type response regulator 4%2C B-type RR 2%2C LEPTOTENE1%2C LEPTOTENE 1%2C Defective Leptotene Chromosome 1;Note=B-type response regulator%2C Cytokinin signaling%2C Rice meiosis and fertility;Transcript_evidence=AK100530 (Genbank),BR000253 (Genbank);ORF_evidence=Q6H805 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: two-component response regulator activity (GO:0000156),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),CheY-like superfamily (IPR011006),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Response regulator%2C plant B-type (IPR017053),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J023101H04;Manual Curation=July 31%2C 2019;Literature_PMID=16919402,17293362,31004552;Oryzabase=8151;Expression=AK100530;TENOR=Os02t0182100-01;KEGG=Os02t0182100-01
Chr02	irgsp1_rep	five_prime_UTR	4578104	4578257	.	-	.	Parent=Os02t0182100-01
Chr02	irgsp1_rep	CDS	4577941	4578103	.	-	0	Parent=Os02t0182100-01
Chr02	irgsp1_rep	CDS	4577233	4577385	.	-	2	Parent=Os02t0182100-01
Chr02	irgsp1_rep	CDS	4576268	4576660	.	-	2	Parent=Os02t0182100-01
Chr02	irgsp1_rep	CDS	4576091	4576167	.	-	2	Parent=Os02t0182100-01
Chr02	irgsp1_rep	CDS	4574656	4575696	.	-	0	Parent=Os02t0182100-01
Chr02	irgsp1_rep	CDS	4574150	4574203	.	-	0	Parent=Os02t0182100-01
Chr02	irgsp1_rep	three_prime_UTR	4573831	4574149	.	-	.	Parent=Os02t0182100-01
Chr02	irgsp1_rep	mRNA	4573847	4578095	.	+	.	ID=Os02t0182200-00;Name=Os02t0182200-00;Locus_id=Os02g0182200;Note=Hypothetical protein.;Transcript_evidence=tplb0021b07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0182200-00
Chr02	irgsp1_rep	five_prime_UTR	4573847	4574188	.	+	.	Parent=Os02t0182200-00
Chr02	irgsp1_rep	five_prime_UTR	4574644	4575681	.	+	.	Parent=Os02t0182200-00
Chr02	irgsp1_rep	five_prime_UTR	4576082	4576121	.	+	.	Parent=Os02t0182200-00
Chr02	irgsp1_rep	CDS	4576122	4576167	.	+	0	Parent=Os02t0182200-00
Chr02	irgsp1_rep	CDS	4576268	4576491	.	+	2	Parent=Os02t0182200-00
Chr02	irgsp1_rep	three_prime_UTR	4576492	4576646	.	+	.	Parent=Os02t0182200-00
Chr02	irgsp1_rep	three_prime_UTR	4577218	4577381	.	+	.	Parent=Os02t0182200-00
Chr02	irgsp1_rep	three_prime_UTR	4577936	4578095	.	+	.	Parent=Os02t0182200-00
Chr02	irgsp1_rep	mRNA	4594375	4595386	.	-	.	ID=Os02t0182300-00;Name=Os02t0182300-00;Locus_id=Os02g0182300;Note=Hypothetical conserved gene.;Transcript_evidence=CT835407 (DDBJ%2C Best hit);ORF_evidence=Q6H802 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);TENOR=Os02t0182300-00;KEGG=Os02t0182300-00
Chr02	irgsp1_rep	five_prime_UTR	4595337	4595386	.	-	.	Parent=Os02t0182300-00
Chr02	irgsp1_rep	CDS	4594752	4595336	.	-	0	Parent=Os02t0182300-00
Chr02	irgsp1_rep	three_prime_UTR	4594375	4594751	.	-	.	Parent=Os02t0182300-00
Chr02	irgsp1_rep	mRNA	4598883	4601382	.	-	.	ID=Os02t0182500-01;Name=Os02t0182500-01;Locus_id=Os02g0182500;Note=Similar to Proteasome subunit beta type 3 (EC 3.4.25.1) (20S proteasome alpha subunit C) (20S proteasome subunit beta-3).;Transcript_evidence=AK242205 (DDBJ%2C Best hit);ORF_evidence=A3A3U3 (UniProt);GO=Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603),Cellular Component: proteasome core complex (GO:0005839),Molecular Function: endopeptidase activity (GO:0004175),Molecular Function: threonine-type endopeptidase activity (GO:0004298);InterPro=Proteasome%2C subunit alpha/beta (IPR001353),Proteasome%2C beta-type subunit%2C conserved site (IPR016050),Proteasome B-type subunit (IPR023333);NIAS_FLcDNA=J075169L17;TENOR=Os02t0182500-01;KEGG=Os02t0182500-01 (EC:3.4.25.1)
Chr02	irgsp1_rep	five_prime_UTR	4601276	4601382	.	-	.	Parent=Os02t0182500-01
Chr02	irgsp1_rep	CDS	4601270	4601275	.	-	0	Parent=Os02t0182500-01
Chr02	irgsp1_rep	CDS	4600986	4601167	.	-	0	Parent=Os02t0182500-01
Chr02	irgsp1_rep	CDS	4600775	4600882	.	-	1	Parent=Os02t0182500-01
Chr02	irgsp1_rep	CDS	4600110	4600199	.	-	1	Parent=Os02t0182500-01
Chr02	irgsp1_rep	CDS	4599413	4599497	.	-	1	Parent=Os02t0182500-01
Chr02	irgsp1_rep	CDS	4599212	4599306	.	-	0	Parent=Os02t0182500-01
Chr02	irgsp1_rep	CDS	4599038	4599086	.	-	1	Parent=Os02t0182500-01
Chr02	irgsp1_rep	three_prime_UTR	4598883	4599037	.	-	.	Parent=Os02t0182500-01
Chr02	irgsp1_rep	mRNA	4604019	4604751	.	-	.	ID=Os02t0182600-00;Name=Os02t0182600-00;Locus_id=Os02g0182600;Note=Similar to Protein kinase-like protein (Fragment).;Transcript_evidence=CT835323 (DDBJ%2C Best hit);ORF_evidence=Q84P71 (UniProt);TENOR=Os02t0182600-00;KEGG=Os02t0182600-00
Chr02	irgsp1_rep	five_prime_UTR	4604717	4604751	.	-	.	Parent=Os02t0182600-00
Chr02	irgsp1_rep	CDS	4604621	4604716	.	-	0	Parent=Os02t0182600-00
Chr02	irgsp1_rep	CDS	4604376	4604540	.	-	0	Parent=Os02t0182600-00
Chr02	irgsp1_rep	three_prime_UTR	4604019	4604375	.	-	.	Parent=Os02t0182600-00
Chr02	irgsp1_rep	mRNA	4616832	4621974	.	+	.	ID=Os02t0182700-01;Name=Os02t0182700-01;Locus_id=Os02g0182700;CGSNL Gene Symbol=DLN45;CGSNL Gene Name=DLN REPRESSOR 45;Oryzabase Gene Symbol Synonym(s)=OsDLN45;Oryzabase Gene Name Synonym(s)=DLN repressor 45%2C DLN motif protein 45;Note=Conserved hypothetical protein.;Transcript_evidence=AK107630 (DDBJ%2C Best hit);ORF_evidence=B9F3P4 (UniProt);NIAS_FLcDNA=002-131-E03;Oryzabase=23165;Expression=AK107630;TENOR=Os02t0182700-01;KEGG=Os02t0182700-01
Chr02	irgsp1_rep	five_prime_UTR	4616832	4616938	.	+	.	Parent=Os02t0182700-01
Chr02	irgsp1_rep	CDS	4616939	4617310	.	+	0	Parent=Os02t0182700-01
Chr02	irgsp1_rep	CDS	4618726	4618812	.	+	0	Parent=Os02t0182700-01
Chr02	irgsp1_rep	CDS	4619325	4619387	.	+	0	Parent=Os02t0182700-01
Chr02	irgsp1_rep	CDS	4619481	4619540	.	+	0	Parent=Os02t0182700-01
Chr02	irgsp1_rep	CDS	4621587	4621754	.	+	0	Parent=Os02t0182700-01
Chr02	irgsp1_rep	three_prime_UTR	4621755	4621974	.	+	.	Parent=Os02t0182700-01
Chr02	irgsp1_rep	mRNA	4625425	4628750	.	+	.	ID=Os02t0182800-01;Name=Os02t0182800-01;Locus_id=Os02g0182800;CGSNL Gene Symbol=HOS58;CGSNL Gene Name=HOMEOBOX ORYZA SATIVA 58;Oryzabase Gene Name Synonym(s)=Homeobox protein knotted-1-like 2%2C Homeobox protein HOS58;Note=Similar to NTH23 protein.;Transcript_evidence=AK243352 (DDBJ%2C Best hit);ORF_evidence=Q0E3C3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),ELK (IPR005539),KNOX1 (IPR005540),KNOX2 (IPR005541),Homeobox KN domain (IPR008422),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);NIAS_FLcDNA=J100060L07;Oryzabase=8706;TENOR=Os02t0182800-01;KEGG=Os02t0182800-01
Chr02	irgsp1_rep	five_prime_UTR	4625425	4625566	.	+	.	Parent=Os02t0182800-01
Chr02	irgsp1_rep	CDS	4625567	4625890	.	+	0	Parent=Os02t0182800-01
Chr02	irgsp1_rep	CDS	4626827	4626947	.	+	0	Parent=Os02t0182800-01
Chr02	irgsp1_rep	CDS	4627646	4627836	.	+	2	Parent=Os02t0182800-01
Chr02	irgsp1_rep	CDS	4627913	4628044	.	+	0	Parent=Os02t0182800-01
Chr02	irgsp1_rep	CDS	4628135	4628268	.	+	0	Parent=Os02t0182800-01
Chr02	irgsp1_rep	CDS	4628367	4628406	.	+	1	Parent=Os02t0182800-01
Chr02	irgsp1_rep	three_prime_UTR	4628407	4628750	.	+	.	Parent=Os02t0182800-01
Chr02	irgsp1_rep	mRNA	4629617	4630180	.	-	.	ID=Os02t0182850-00;Name=Os02t0182850-00;Locus_id=Os02g0182850;Note=Hypothetical conserved gene.;Transcript_evidence=CU861872 (DDBJ%2C Best hit);ORF_evidence=Q6H891 (UniProt);TENOR=Os02t0182850-00;KEGG=Os02t0182850-00
Chr02	irgsp1_rep	five_prime_UTR	4630091	4630180	.	-	.	Parent=Os02t0182850-00
Chr02	irgsp1_rep	CDS	4629779	4630090	.	-	0	Parent=Os02t0182850-00
Chr02	irgsp1_rep	three_prime_UTR	4629617	4629778	.	-	.	Parent=Os02t0182850-00
Chr02	irgsp1_rep	mRNA	4630446	4634616	.	-	.	ID=Os02t0182900-01;Name=Os02t0182900-01;Locus_id=Os02g0182900;CGSNL Gene Symbol=APIP10;CGSNL Gene Name=AVRPIZ-T INTERACTING PROTEIN 10;Oryzabase Gene Symbol Synonym(s)=OsAPIP10;Oryzabase Gene Name Synonym(s)=AvrPiz-t Interacting Protein 10;Note=Similar to BRCA1-associated protein (EC 6.3.2.-) (BRAP2) (Impedes mitogenic signal propagation) (IMP). Splice isoform 3.;Transcript_evidence=AK120718 (DDBJ%2C Best hit);ORF_evidence=NP_001148772.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C UBP-type (IPR001607),Zinc finger%2C RING-type (IPR001841),BRCA1-associated 2 (IPR011422),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J023002D22;Oryzabase=20996;Expression=AK120718;TENOR=Os02t0182900-01;KEGG=Os02t0182900-01 (EC:6.3.2.19)
Chr02	irgsp1_rep	five_prime_UTR	4634500	4634616	.	-	.	Parent=Os02t0182900-01
Chr02	irgsp1_rep	CDS	4634335	4634499	.	-	0	Parent=Os02t0182900-01
Chr02	irgsp1_rep	CDS	4634140	4634255	.	-	0	Parent=Os02t0182900-01
Chr02	irgsp1_rep	CDS	4633819	4633927	.	-	1	Parent=Os02t0182900-01
Chr02	irgsp1_rep	CDS	4633608	4633722	.	-	0	Parent=Os02t0182900-01
Chr02	irgsp1_rep	CDS	4633003	4633100	.	-	2	Parent=Os02t0182900-01
Chr02	irgsp1_rep	CDS	4632627	4632733	.	-	0	Parent=Os02t0182900-01
Chr02	irgsp1_rep	CDS	4632286	4632544	.	-	1	Parent=Os02t0182900-01
Chr02	irgsp1_rep	three_prime_UTR	4632144	4632285	.	-	.	Parent=Os02t0182900-01
Chr02	irgsp1_rep	three_prime_UTR	4631717	4631860	.	-	.	Parent=Os02t0182900-01
Chr02	irgsp1_rep	three_prime_UTR	4631542	4631606	.	-	.	Parent=Os02t0182900-01
Chr02	irgsp1_rep	three_prime_UTR	4631203	4631257	.	-	.	Parent=Os02t0182900-01
Chr02	irgsp1_rep	three_prime_UTR	4630446	4630708	.	-	.	Parent=Os02t0182900-01
Chr02	irgsp1_rep	mRNA	4630330	4634623	.	-	.	ID=Os02t0182900-02;Name=Os02t0182900-02;Locus_id=Os02g0182900;RAP-DB Gene Symbol Synonym(s)=APIP10;RAP-DB Gene Name Synonym(s)=AvrPiz-t interacting protein 10;CGSNL Gene Symbol=APIP10;CGSNL Gene Name=AVRPIZ-T INTERACTING PROTEIN 10;Oryzabase Gene Symbol Synonym(s)=OsAPIP10;Oryzabase Gene Name Synonym(s)=AvrPiz-t Interacting Protein 10;Note=RING finger E3 ligase%2C Positive regulator of PAMP-triggered immunity (PTI)%2C Target of the fungal effector and negative regulator of the NLR receptor;Transcript_evidence=Inferred from literature;ORF_evidence=B8AIX5;GO=Biological Process: regulation of seed germination (GO:0010029),Biological Process: protein ubiquitination (GO:0016567),Molecular Function: ubiquitin-protein transferase activity (GO:0004842),Molecular Function: zinc ion binding (GO:0008270),Cellular Component: ubiquitin ligase complex (GO:0000151);InterPro=RING domain containing protein BRIZ1 (IPR033273),BRCA1-associated 2 (IPR011422),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841),Zinc finger%2C UBP-type (IPR001607);Manual Curation=June 19%2C 2017;Literature_PMID=27031246;Oryzabase=20996
Chr02	irgsp1_rep	five_prime_UTR	4634500	4634623	.	-	.	Parent=Os02t0182900-02
Chr02	irgsp1_rep	CDS	4634335	4634499	.	-	0	Parent=Os02t0182900-02
Chr02	irgsp1_rep	CDS	4634140	4634255	.	-	0	Parent=Os02t0182900-02
Chr02	irgsp1_rep	CDS	4633819	4633927	.	-	1	Parent=Os02t0182900-02
Chr02	irgsp1_rep	CDS	4633608	4633722	.	-	0	Parent=Os02t0182900-02
Chr02	irgsp1_rep	CDS	4633003	4633100	.	-	2	Parent=Os02t0182900-02
Chr02	irgsp1_rep	CDS	4632627	4632733	.	-	0	Parent=Os02t0182900-02
Chr02	irgsp1_rep	CDS	4632298	4632544	.	-	1	Parent=Os02t0182900-02
Chr02	irgsp1_rep	CDS	4632144	4632197	.	-	0	Parent=Os02t0182900-02
Chr02	irgsp1_rep	CDS	4631717	4631860	.	-	0	Parent=Os02t0182900-02
Chr02	irgsp1_rep	CDS	4631542	4631606	.	-	0	Parent=Os02t0182900-02
Chr02	irgsp1_rep	CDS	4631203	4631257	.	-	1	Parent=Os02t0182900-02
Chr02	irgsp1_rep	CDS	4630565	4630708	.	-	0	Parent=Os02t0182900-02
Chr02	irgsp1_rep	three_prime_UTR	4630330	4630564	.	-	.	Parent=Os02t0182900-02
Chr02	irgsp1_rep	mRNA	4639932	4641686	.	-	.	ID=Os02t0183000-00;Name=Os02t0183000-00;Locus_id=Os02g0183000;Note=Protein of unknown function DUF597 domain containing protein.;Transcript_evidence=AK373276 (DDBJ);ORF_evidence=NP_001046103.2 (RefSeq);InterPro=Protein of unknown function DUF597 (IPR006734);TENOR=Os02t0183000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	4641558	4641686	.	-	.	Parent=Os02t0183000-00
Chr02	irgsp1_rep	CDS	4641549	4641557	.	-	0	Parent=Os02t0183000-00
Chr02	irgsp1_rep	CDS	4641219	4641467	.	-	0	Parent=Os02t0183000-00
Chr02	irgsp1_rep	CDS	4640982	4641122	.	-	0	Parent=Os02t0183000-00
Chr02	irgsp1_rep	CDS	4640152	4640466	.	-	0	Parent=Os02t0183000-00
Chr02	irgsp1_rep	three_prime_UTR	4639932	4640151	.	-	.	Parent=Os02t0183000-00
Chr02	irgsp1_rep	mRNA	4650723	4653983	.	+	.	ID=Os02t0183500-00;Name=Os02t0183500-00;Locus_id=Os02g0183500;Note=Hypothetical conserved gene.;Transcript_evidence=AK333923 (DDBJ);ORF_evidence=NP_001046104.1 (RefSeq);TENOR=Os02t0183500-00;KEGG=Os02t0183500-00
Chr02	irgsp1_rep	CDS	4650723	4650894	.	+	0	Parent=Os02t0183500-00
Chr02	irgsp1_rep	CDS	4651015	4651208	.	+	2	Parent=Os02t0183500-00
Chr02	irgsp1_rep	CDS	4651290	4651600	.	+	0	Parent=Os02t0183500-00
Chr02	irgsp1_rep	CDS	4652406	4652543	.	+	1	Parent=Os02t0183500-00
Chr02	irgsp1_rep	CDS	4653242	4653983	.	+	1	Parent=Os02t0183500-00
Chr02	irgsp1_rep	mRNA	4650762	4653969	.	-	.	ID=Os02t0183550-00;Name=Os02t0183550-00;Locus_id=Os02g0183550;Note=Hypothetical protein.;Transcript_evidence=tplb0048p04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0183550-00
Chr02	irgsp1_rep	five_prime_UTR	4653936	4653969	.	-	.	Parent=Os02t0183550-00
Chr02	irgsp1_rep	CDS	4653235	4653935	.	-	0	Parent=Os02t0183550-00
Chr02	irgsp1_rep	CDS	4652439	4652535	.	-	1	Parent=Os02t0183550-00
Chr02	irgsp1_rep	CDS	4651614	4651637	.	-	0	Parent=Os02t0183550-00
Chr02	irgsp1_rep	three_prime_UTR	4651312	4651613	.	-	.	Parent=Os02t0183550-00
Chr02	irgsp1_rep	three_prime_UTR	4651029	4651231	.	-	.	Parent=Os02t0183550-00
Chr02	irgsp1_rep	three_prime_UTR	4650762	4650904	.	-	.	Parent=Os02t0183550-00
Chr02	irgsp1_rep	mRNA	4658389	4680026	.	-	.	ID=Os02t0183900-00;Name=Os02t0183900-00;Locus_id=Os02g0183900;Note=Similar to Isoleucine-tRNA ligase-like protein.;Transcript_evidence=AK363758 (DDBJ);ORF_evidence=Q9SV89 (UniProt);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: isoleucyl-tRNA aminoacylation (GO:0006428),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: isoleucine-tRNA ligase activity (GO:0004822),Molecular Function: ATP binding (GO:0005524);InterPro=Aminoacyl-tRNA synthetase%2C class I%2C conserved site (IPR001412),Aminoacyl-tRNA synthetase%2C class Ia (IPR002300),Isoleucyl-tRNA synthetase (IPR002301),Valyl/Leucyl/Isoleucyl-tRNA synthetase%2C class Ia%2C editing domain (IPR009008),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);TENOR=Os02t0183900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	4679926	4680026	.	-	.	Parent=Os02t0183900-00
Chr02	irgsp1_rep	CDS	4679392	4679925	.	-	0	Parent=Os02t0183900-00
Chr02	irgsp1_rep	CDS	4678644	4678709	.	-	0	Parent=Os02t0183900-00
Chr02	irgsp1_rep	CDS	4678416	4678557	.	-	0	Parent=Os02t0183900-00
Chr02	irgsp1_rep	CDS	4677659	4677663	.	-	2	Parent=Os02t0183900-00
Chr02	irgsp1_rep	three_prime_UTR	4677470	4677658	.	-	.	Parent=Os02t0183900-00
Chr02	irgsp1_rep	three_prime_UTR	4676956	4677118	.	-	.	Parent=Os02t0183900-00
Chr02	irgsp1_rep	three_prime_UTR	4666173	4666292	.	-	.	Parent=Os02t0183900-00
Chr02	irgsp1_rep	three_prime_UTR	4665931	4666028	.	-	.	Parent=Os02t0183900-00
Chr02	irgsp1_rep	three_prime_UTR	4665531	4665609	.	-	.	Parent=Os02t0183900-00
Chr02	irgsp1_rep	three_prime_UTR	4664316	4664474	.	-	.	Parent=Os02t0183900-00
Chr02	irgsp1_rep	three_prime_UTR	4664050	4664139	.	-	.	Parent=Os02t0183900-00
Chr02	irgsp1_rep	three_prime_UTR	4662996	4663129	.	-	.	Parent=Os02t0183900-00
Chr02	irgsp1_rep	three_prime_UTR	4662586	4662745	.	-	.	Parent=Os02t0183900-00
Chr02	irgsp1_rep	three_prime_UTR	4662346	4662429	.	-	.	Parent=Os02t0183900-00
Chr02	irgsp1_rep	three_prime_UTR	4661974	4662186	.	-	.	Parent=Os02t0183900-00
Chr02	irgsp1_rep	three_prime_UTR	4661745	4661870	.	-	.	Parent=Os02t0183900-00
Chr02	irgsp1_rep	three_prime_UTR	4661127	4661264	.	-	.	Parent=Os02t0183900-00
Chr02	irgsp1_rep	three_prime_UTR	4660920	4661024	.	-	.	Parent=Os02t0183900-00
Chr02	irgsp1_rep	three_prime_UTR	4660577	4660638	.	-	.	Parent=Os02t0183900-00
Chr02	irgsp1_rep	three_prime_UTR	4660221	4660309	.	-	.	Parent=Os02t0183900-00
Chr02	irgsp1_rep	three_prime_UTR	4659997	4660138	.	-	.	Parent=Os02t0183900-00
Chr02	irgsp1_rep	three_prime_UTR	4659706	4659769	.	-	.	Parent=Os02t0183900-00
Chr02	irgsp1_rep	three_prime_UTR	4659565	4659632	.	-	.	Parent=Os02t0183900-00
Chr02	irgsp1_rep	three_prime_UTR	4658957	4659079	.	-	.	Parent=Os02t0183900-00
Chr02	irgsp1_rep	three_prime_UTR	4658814	4658876	.	-	.	Parent=Os02t0183900-00
Chr02	irgsp1_rep	three_prime_UTR	4658389	4658465	.	-	.	Parent=Os02t0183900-00
Chr02	irgsp1_rep	mRNA	4681430	4689586	.	-	.	ID=Os02t0184000-01;Name=Os02t0184000-01;Locus_id=Os02g0184000;Oryzabase Gene Symbol Synonym(s)=TIP1;Oryzabase Gene Name Synonym(s)=palmitoyltransferase TIP1;Note=Ankyrin domain containing protein.;Transcript_evidence=AK072584 (DDBJ%2C Best hit);ORF_evidence=B8AIX9 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C DHHC-type%2C palmitoyltransferase (IPR001594),Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J023132A01;Oryzabase=21442;Expression=AK072584;TENOR=Os02t0184000-01;KEGG=Os02t0184000-01
Chr02	irgsp1_rep	five_prime_UTR	4689515	4689586	.	-	.	Parent=Os02t0184000-01
Chr02	irgsp1_rep	CDS	4689215	4689514	.	-	0	Parent=Os02t0184000-01
Chr02	irgsp1_rep	CDS	4688256	4688396	.	-	0	Parent=Os02t0184000-01
Chr02	irgsp1_rep	CDS	4687271	4687383	.	-	0	Parent=Os02t0184000-01
Chr02	irgsp1_rep	CDS	4687049	4687129	.	-	1	Parent=Os02t0184000-01
Chr02	irgsp1_rep	CDS	4686732	4686894	.	-	1	Parent=Os02t0184000-01
Chr02	irgsp1_rep	CDS	4686003	4686141	.	-	0	Parent=Os02t0184000-01
Chr02	irgsp1_rep	CDS	4685817	4685916	.	-	2	Parent=Os02t0184000-01
Chr02	irgsp1_rep	CDS	4685234	4685291	.	-	1	Parent=Os02t0184000-01
Chr02	irgsp1_rep	CDS	4685007	4685084	.	-	0	Parent=Os02t0184000-01
Chr02	irgsp1_rep	CDS	4684830	4684928	.	-	0	Parent=Os02t0184000-01
Chr02	irgsp1_rep	CDS	4684482	4684560	.	-	0	Parent=Os02t0184000-01
Chr02	irgsp1_rep	CDS	4684253	4684401	.	-	2	Parent=Os02t0184000-01
Chr02	irgsp1_rep	CDS	4681837	4682301	.	-	0	Parent=Os02t0184000-01
Chr02	irgsp1_rep	three_prime_UTR	4681430	4681836	.	-	.	Parent=Os02t0184000-01
Chr02	irgsp1_rep	mRNA	4690553	4692336	.	+	.	ID=Os02t0184100-01;Name=Os02t0184100-01;Locus_id=Os02g0184100;Note=Conserved hypothetical protein.;Transcript_evidence=AK106586 (DDBJ%2C Best hit);ORF_evidence=Q69M18 (UniProt);NIAS_FLcDNA=002-111-E12;TENOR=Os02t0184100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	4690553	4691127	.	+	.	Parent=Os02t0184100-01
Chr02	irgsp1_rep	CDS	4691128	4691346	.	+	0	Parent=Os02t0184100-01
Chr02	irgsp1_rep	three_prime_UTR	4691347	4692336	.	+	.	Parent=Os02t0184100-01
Chr02	irgsp1_rep	mRNA	4690567	4693549	.	+	.	ID=Os02t0184100-02;Name=Os02t0184100-02;Locus_id=Os02g0184100;Note=Similar to nucleolin.;Transcript_evidence=AK073734 (DDBJ%2C Best hit);ORF_evidence=NP_001149432.1 (RefSeq);NIAS_FLcDNA=J033057I06;Expression=AK073734;TENOR=Os02t0184100-02;KEGG=Os02t0184100-02
Chr02	irgsp1_rep	five_prime_UTR	4690567	4690609	.	+	.	Parent=Os02t0184100-02
Chr02	irgsp1_rep	CDS	4690610	4690699	.	+	0	Parent=Os02t0184100-02
Chr02	irgsp1_rep	CDS	4692676	4692737	.	+	0	Parent=Os02t0184100-02
Chr02	irgsp1_rep	CDS	4692870	4693233	.	+	1	Parent=Os02t0184100-02
Chr02	irgsp1_rep	three_prime_UTR	4693234	4693549	.	+	.	Parent=Os02t0184100-02
Chr02	irgsp1_rep	mRNA	4693892	4695523	.	-	.	ID=Os02t0184200-01;Name=Os02t0184200-01;Locus_id=Os02g0184200;Note=Similar to Vacuolar proton pyrophosphatase.;Transcript_evidence=AK242307 (DDBJ%2C Best hit);ORF_evidence=Q75U52 (UniProt);GO=Biological Process: proton transport (GO:0015992),Cellular Component: membrane (GO:0016020),Molecular Function: inorganic diphosphatase activity (GO:0004427),Molecular Function: hydrogen-translocating pyrophosphatase activity (GO:0009678);InterPro=Pyrophosphate-energised proton pump (IPR004131);NIAS_FLcDNA=J075194A02;TENOR=Os02t0184200-01;KEGG=Os02t0184200-01 (EC:3.6.1.1)
Chr02	irgsp1_rep	five_prime_UTR	4695522	4695523	.	-	.	Parent=Os02t0184200-01
Chr02	irgsp1_rep	CDS	4695255	4695521	.	-	0	Parent=Os02t0184200-01
Chr02	irgsp1_rep	CDS	4694584	4694994	.	-	0	Parent=Os02t0184200-01
Chr02	irgsp1_rep	CDS	4694446	4694505	.	-	0	Parent=Os02t0184200-01
Chr02	irgsp1_rep	CDS	4694153	4694359	.	-	0	Parent=Os02t0184200-01
Chr02	irgsp1_rep	three_prime_UTR	4693892	4694152	.	-	.	Parent=Os02t0184200-01
Chr02	irgsp1_rep	mRNA	4694037	4699309	.	+	.	ID=Os02t0184300-00;Name=Os02t0184300-00;Locus_id=Os02g0184300;Note=Hypothetical protein.;Transcript_evidence=tplb0034o06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0184300-00
Chr02	irgsp1_rep	five_prime_UTR	4694037	4694358	.	+	.	Parent=Os02t0184300-00
Chr02	irgsp1_rep	five_prime_UTR	4694445	4694515	.	+	.	Parent=Os02t0184300-00
Chr02	irgsp1_rep	five_prime_UTR	4694595	4694993	.	+	.	Parent=Os02t0184300-00
Chr02	irgsp1_rep	five_prime_UTR	4695254	4695577	.	+	.	Parent=Os02t0184300-00
Chr02	irgsp1_rep	five_prime_UTR	4695656	4695763	.	+	.	Parent=Os02t0184300-00
Chr02	irgsp1_rep	five_prime_UTR	4695845	4696115	.	+	.	Parent=Os02t0184300-00
Chr02	irgsp1_rep	CDS	4696116	4696209	.	+	0	Parent=Os02t0184300-00
Chr02	irgsp1_rep	CDS	4696355	4696896	.	+	2	Parent=Os02t0184300-00
Chr02	irgsp1_rep	three_prime_UTR	4696897	4696930	.	+	.	Parent=Os02t0184300-00
Chr02	irgsp1_rep	three_prime_UTR	4699024	4699309	.	+	.	Parent=Os02t0184300-00
Chr02	irgsp1_rep	mRNA	4708493	4716280	.	+	.	ID=Os02t0184400-01;Name=Os02t0184400-01;Locus_id=Os02g0184400;CGSNL Gene Symbol=SPS2;CGSNL Gene Name=SUCROSE PHOSPHATE SYNTHASE 2;Oryzabase Gene Symbol Synonym(s)=OsSPS2;Oryzabase Gene Name Synonym(s)=sucrose phosphate synthase 2;Note=Similar to Sucrose-phosphate synthase 9 (EC 2.4.1.14).;Transcript_evidence=AK121486 (DDBJ%2C Best hit);ORF_evidence=D6BND7 (UniProt);GO=Biological Process: sucrose metabolic process (GO:0005985),Biological Process: biosynthetic process (GO:0009058),Molecular Function: sucrose-phosphate synthase activity (GO:0046524);InterPro=Sucrose synthase (IPR000368),Glycosyl transferase%2C family 1 (IPR001296),Sucrose-phosphate synthase (IPR006380),Sucrose phosphate synthase%2C plant (IPR012819);NIAS_FLcDNA=J023150H16;Oryzabase=11205;Expression=AK121486;TENOR=Os02t0184400-01;KEGG=Os02t0184400-01 (EC:2.4.1.14)
Chr02	irgsp1_rep	five_prime_UTR	4708493	4708506	.	+	.	Parent=Os02t0184400-01
Chr02	irgsp1_rep	CDS	4708507	4708839	.	+	0	Parent=Os02t0184400-01
Chr02	irgsp1_rep	CDS	4708978	4709067	.	+	0	Parent=Os02t0184400-01
Chr02	irgsp1_rep	CDS	4710127	4710335	.	+	0	Parent=Os02t0184400-01
Chr02	irgsp1_rep	CDS	4711254	4711317	.	+	1	Parent=Os02t0184400-01
Chr02	irgsp1_rep	CDS	4711796	4712494	.	+	0	Parent=Os02t0184400-01
Chr02	irgsp1_rep	CDS	4712660	4712767	.	+	0	Parent=Os02t0184400-01
Chr02	irgsp1_rep	CDS	4712923	4713054	.	+	0	Parent=Os02t0184400-01
Chr02	irgsp1_rep	CDS	4713186	4713362	.	+	0	Parent=Os02t0184400-01
Chr02	irgsp1_rep	CDS	4713923	4713976	.	+	0	Parent=Os02t0184400-01
Chr02	irgsp1_rep	CDS	4714075	4714137	.	+	0	Parent=Os02t0184400-01
Chr02	irgsp1_rep	CDS	4714230	4714931	.	+	0	Parent=Os02t0184400-01
Chr02	irgsp1_rep	CDS	4715051	4715178	.	+	0	Parent=Os02t0184400-01
Chr02	irgsp1_rep	CDS	4715566	4715842	.	+	1	Parent=Os02t0184400-01
Chr02	irgsp1_rep	three_prime_UTR	4715843	4716280	.	+	.	Parent=Os02t0184400-01
Chr02	irgsp1_rep	mRNA	4708528	4716151	.	+	.	ID=Os02t0184400-02;Name=Os02t0184400-02;Locus_id=Os02g0184400;CGSNL Gene Symbol=SPS2;CGSNL Gene Name=SUCROSE PHOSPHATE SYNTHASE 2;Oryzabase Gene Symbol Synonym(s)=OsSPS2;Oryzabase Gene Name Synonym(s)=sucrose phosphate synthase 2;Note=Sucrose-phosphate synthase 9 (EC 2.4.1.14).;Transcript_evidence=AK065273 (DDBJ%2C Best hit);ORF_evidence=D6BND7 (UniProt);GO=Biological Process: sucrose metabolic process (GO:0005985),Biological Process: biosynthetic process (GO:0009058),Molecular Function: sucrose-phosphate synthase activity (GO:0046524);InterPro=Sucrose synthase (IPR000368),Glycosyl transferase%2C family 1 (IPR001296),Sucrose-phosphate synthase (IPR006380),Sucrose phosphate synthase%2C plant (IPR012819);NIAS_FLcDNA=J013002L08;Oryzabase=11205;Expression=AK065273;TENOR=Os02t0184400-02;KEGG=Os02t0184400-02 (EC:2.4.1.14)
Chr02	irgsp1_rep	five_prime_UTR	4708528	4708650	.	+	.	Parent=Os02t0184400-02
Chr02	irgsp1_rep	CDS	4708651	4708839	.	+	0	Parent=Os02t0184400-02
Chr02	irgsp1_rep	CDS	4708978	4709067	.	+	0	Parent=Os02t0184400-02
Chr02	irgsp1_rep	CDS	4710127	4710335	.	+	0	Parent=Os02t0184400-02
Chr02	irgsp1_rep	CDS	4711254	4711317	.	+	1	Parent=Os02t0184400-02
Chr02	irgsp1_rep	CDS	4711796	4712494	.	+	0	Parent=Os02t0184400-02
Chr02	irgsp1_rep	CDS	4712660	4712767	.	+	0	Parent=Os02t0184400-02
Chr02	irgsp1_rep	CDS	4712923	4713054	.	+	0	Parent=Os02t0184400-02
Chr02	irgsp1_rep	CDS	4713186	4713362	.	+	0	Parent=Os02t0184400-02
Chr02	irgsp1_rep	CDS	4713923	4713976	.	+	0	Parent=Os02t0184400-02
Chr02	irgsp1_rep	CDS	4714075	4714137	.	+	0	Parent=Os02t0184400-02
Chr02	irgsp1_rep	CDS	4714230	4714931	.	+	0	Parent=Os02t0184400-02
Chr02	irgsp1_rep	CDS	4715051	4715178	.	+	0	Parent=Os02t0184400-02
Chr02	irgsp1_rep	CDS	4715566	4715842	.	+	1	Parent=Os02t0184400-02
Chr02	irgsp1_rep	three_prime_UTR	4715843	4716151	.	+	.	Parent=Os02t0184400-02
Chr02	irgsp1_rep	mRNA	4708556	4716111	.	+	.	ID=Os02t0184400-03;Name=Os02t0184400-03;Locus_id=Os02g0184400;CGSNL Gene Symbol=SPS2;CGSNL Gene Name=SUCROSE PHOSPHATE SYNTHASE 2;Oryzabase Gene Symbol Synonym(s)=OsSPS2;Oryzabase Gene Name Synonym(s)=sucrose phosphate synthase 2;Note=Sucrose-phosphate synthase 9 (EC 2.4.1.14).;Transcript_evidence=AK098898 (DDBJ%2C Best hit);ORF_evidence=D6BND7 (UniProt);GO=Biological Process: sucrose metabolic process (GO:0005985),Biological Process: biosynthetic process (GO:0009058),Molecular Function: sucrose-phosphate synthase activity (GO:0046524);InterPro=Sucrose synthase (IPR000368),Glycosyl transferase%2C family 1 (IPR001296),Sucrose-phosphate synthase (IPR006380),Sucrose phosphate synthase%2C plant (IPR012819);NIAS_FLcDNA=J013002B04;Oryzabase=11205;Expression=AK098898;TENOR=Os02t0184400-03;KEGG=Os02t0184400-03 (EC:2.4.1.14)
Chr02	irgsp1_rep	five_prime_UTR	4708556	4708650	.	+	.	Parent=Os02t0184400-03
Chr02	irgsp1_rep	CDS	4708651	4708839	.	+	0	Parent=Os02t0184400-03
Chr02	irgsp1_rep	CDS	4708978	4709067	.	+	0	Parent=Os02t0184400-03
Chr02	irgsp1_rep	CDS	4710127	4710335	.	+	0	Parent=Os02t0184400-03
Chr02	irgsp1_rep	CDS	4711254	4711317	.	+	1	Parent=Os02t0184400-03
Chr02	irgsp1_rep	CDS	4711796	4712494	.	+	0	Parent=Os02t0184400-03
Chr02	irgsp1_rep	CDS	4712660	4712767	.	+	0	Parent=Os02t0184400-03
Chr02	irgsp1_rep	CDS	4712923	4713054	.	+	0	Parent=Os02t0184400-03
Chr02	irgsp1_rep	CDS	4713186	4713362	.	+	0	Parent=Os02t0184400-03
Chr02	irgsp1_rep	CDS	4713923	4713976	.	+	0	Parent=Os02t0184400-03
Chr02	irgsp1_rep	CDS	4714075	4714137	.	+	0	Parent=Os02t0184400-03
Chr02	irgsp1_rep	CDS	4714230	4714931	.	+	0	Parent=Os02t0184400-03
Chr02	irgsp1_rep	CDS	4715051	4715178	.	+	0	Parent=Os02t0184400-03
Chr02	irgsp1_rep	CDS	4715566	4715842	.	+	1	Parent=Os02t0184400-03
Chr02	irgsp1_rep	three_prime_UTR	4715843	4716111	.	+	.	Parent=Os02t0184400-03
Chr02	irgsp1_rep	mRNA	4712347	4716880	.	+	.	ID=Os02t0184400-04;Name=Os02t0184400-04;Locus_id=Os02g0184400;CGSNL Gene Symbol=SPS2;CGSNL Gene Name=SUCROSE PHOSPHATE SYNTHASE 2;Oryzabase Gene Symbol Synonym(s)=OsSPS2;Oryzabase Gene Name Synonym(s)=sucrose phosphate synthase 2;Note=Similar to cDNA clone:J023150H16%2C full insert sequence.;Transcript_evidence=AK063433 (DDBJ%2C Best hit);ORF_evidence=P93783 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058);InterPro=Glycosyl transferase%2C family 1 (IPR001296),Sucrose-phosphate synthase (IPR006380);NIAS_FLcDNA=001-115-D12;Oryzabase=11205;Expression=AK063433;TENOR=Os02t0184400-04;KEGG=Os02t0184400-04 (EC:2.4.1.14)
Chr02	irgsp1_rep	five_prime_UTR	4712347	4712347	.	+	.	Parent=Os02t0184400-04
Chr02	irgsp1_rep	CDS	4712348	4712494	.	+	0	Parent=Os02t0184400-04
Chr02	irgsp1_rep	CDS	4712660	4712767	.	+	0	Parent=Os02t0184400-04
Chr02	irgsp1_rep	CDS	4712923	4713054	.	+	0	Parent=Os02t0184400-04
Chr02	irgsp1_rep	CDS	4713186	4713362	.	+	0	Parent=Os02t0184400-04
Chr02	irgsp1_rep	CDS	4713923	4713976	.	+	0	Parent=Os02t0184400-04
Chr02	irgsp1_rep	CDS	4714075	4714137	.	+	0	Parent=Os02t0184400-04
Chr02	irgsp1_rep	CDS	4714230	4714931	.	+	0	Parent=Os02t0184400-04
Chr02	irgsp1_rep	CDS	4715051	4715178	.	+	0	Parent=Os02t0184400-04
Chr02	irgsp1_rep	CDS	4715566	4715842	.	+	1	Parent=Os02t0184400-04
Chr02	irgsp1_rep	three_prime_UTR	4715843	4716233	.	+	.	Parent=Os02t0184400-04
Chr02	irgsp1_rep	three_prime_UTR	4716350	4716880	.	+	.	Parent=Os02t0184400-04
Chr02	irgsp1_rep	mRNA	4711358	4714139	.	-	.	ID=Os02t0184450-01;Name=Os02t0184450-01;Locus_id=Os02g0184450;Note=Hypothetical gene.;Transcript_evidence=AK288339 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090023G09;TENOR=Os02t0184450-01;KEGG=Os02t0184450-01
Chr02	irgsp1_rep	five_prime_UTR	4712612	4714139	.	-	.	Parent=Os02t0184450-01
Chr02	irgsp1_rep	CDS	4712333	4712611	.	-	0	Parent=Os02t0184450-01
Chr02	irgsp1_rep	three_prime_UTR	4711358	4712332	.	-	.	Parent=Os02t0184450-01
Chr02	irgsp1_rep	mRNA	4717699	4720607	.	+	.	ID=Os02t0184500-01;Name=Os02t0184500-01;Locus_id=Os02g0184500;Oryzabase Gene Symbol Synonym(s)=EIP7;Oryzabase Gene Name Synonym(s)=EBR1-interacting protein 7;Note=Similar to CUE domain containing protein.;Transcript_evidence=AK105238 (DDBJ%2C Best hit);ORF_evidence=B6T3P8 (UniProt);NIAS_FLcDNA=001-113-B02;Oryzabase=21994;Expression=AK105238;TENOR=Os02t0184500-01;KEGG=Os02t0184500-01
Chr02	irgsp1_rep	five_prime_UTR	4717699	4717960	.	+	.	Parent=Os02t0184500-01
Chr02	irgsp1_rep	five_prime_UTR	4718163	4718166	.	+	.	Parent=Os02t0184500-01
Chr02	irgsp1_rep	CDS	4718167	4718178	.	+	0	Parent=Os02t0184500-01
Chr02	irgsp1_rep	CDS	4718722	4718860	.	+	0	Parent=Os02t0184500-01
Chr02	irgsp1_rep	CDS	4719517	4719743	.	+	2	Parent=Os02t0184500-01
Chr02	irgsp1_rep	CDS	4719828	4720001	.	+	0	Parent=Os02t0184500-01
Chr02	irgsp1_rep	CDS	4720093	4720179	.	+	0	Parent=Os02t0184500-01
Chr02	irgsp1_rep	three_prime_UTR	4720180	4720607	.	+	.	Parent=Os02t0184500-01
Chr02	irgsp1_rep	mRNA	4721032	4722122	.	-	.	ID=Os02t0184600-00;Name=Os02t0184600-00;Locus_id=Os02g0184600;CGSNL Gene Symbol=CYP71X12;CGSNL Gene Name=CYTOCHROME P450 71X12;Oryzabase Gene Symbol Synonym(s)=OsEnS-26%2C EnS-26%2C Os CYP71X12;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 26%2C cytoChrome P450 71X12;Note=Similar to CytoChrome P450 CYP71K14.;Transcript_evidence=ab initio prediction;ORF_evidence=B6TEH7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);Oryzabase=18363;TENOR=Os02t0184600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	4721805	4722122	.	-	0	Parent=Os02t0184600-00
Chr02	irgsp1_rep	CDS	4721032	4721676	.	-	0	Parent=Os02t0184600-00
Chr02	irgsp1_rep	mRNA	4721069	4722673	.	+	.	ID=Os02t0184650-00;Name=Os02t0184650-00;Locus_id=Os02g0184650;Note=Hypothetical protein.;Transcript_evidence=tplb0041k22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0184650-00
Chr02	irgsp1_rep	five_prime_UTR	4721069	4721656	.	+	.	Parent=Os02t0184650-00
Chr02	irgsp1_rep	five_prime_UTR	4721785	4721927	.	+	.	Parent=Os02t0184650-00
Chr02	irgsp1_rep	CDS	4721928	4722673	.	+	0	Parent=Os02t0184650-00
Chr02	irgsp1_rep	mRNA	4724319	4726015	.	-	.	ID=Os02t0184700-00;Name=Os02t0184700-00;Locus_id=Os02g0184700;Note=CytoChrome P450 family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B7F8Q5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os02t0184700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	4725086	4726015	.	-	0	Parent=Os02t0184700-00
Chr02	irgsp1_rep	CDS	4724319	4724948	.	-	0	Parent=Os02t0184700-00
Chr02	irgsp1_rep	mRNA	4740035	4742889	.	-	.	ID=Os02t0184800-00;Name=Os02t0184800-00;Locus_id=Os02g0184800;Note=Hypothetical protein.;Transcript_evidence=tplb0041k22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0184800-00
Chr02	irgsp1_rep	five_prime_UTR	4742414	4742889	.	-	.	Parent=Os02t0184800-00
Chr02	irgsp1_rep	CDS	4742390	4742413	.	-	0	Parent=Os02t0184800-00
Chr02	irgsp1_rep	CDS	4740035	4740969	.	-	0	Parent=Os02t0184800-00
Chr02	irgsp1_rep	mRNA	4740049	4743113	.	+	.	ID=Os02t0184900-01;Name=Os02t0184900-01;Locus_id=Os02g0184900;RAP-DB Gene Symbol Synonym(s)=OsCYP71D8L;RAP-DB Gene Name Synonym(s)=CytoChrome P450 71D8L;CGSNL Gene Symbol=CYP71D8L;CGSNL Gene Name=CYTOCHROME P450 71D8L;Oryzabase Gene Symbol Synonym(s)=OsCYP71D8L;Oryzabase Gene Name Synonym(s)=CytoChrome P450 71D8L;Note=CytoChrome P450 family member of CYP71 clan%2C Regulation of growth and abiotic stress responses%2C Gibberellins and cytokinin homeostasis;Transcript_evidence=AK100832;ORF_evidence=Q6ZIH6;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 superfamily (IPR036396),CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J023123D13;Manual Curation=November 7%2C 2019;Literature_PMID=31679005;Oryzabase=23308;Expression=AK100832;TENOR=Os02t0184900-01;KEGG=Os02t0184900-01
Chr02	irgsp1_rep	five_prime_UTR	4740049	4740054	.	+	.	Parent=Os02t0184900-01
Chr02	irgsp1_rep	CDS	4740055	4740972	.	+	0	Parent=Os02t0184900-01
Chr02	irgsp1_rep	CDS	4742386	4743012	.	+	0	Parent=Os02t0184900-01
Chr02	irgsp1_rep	three_prime_UTR	4743013	4743113	.	+	.	Parent=Os02t0184900-01
Chr02	irgsp1_rep	mRNA	4754173	4756298	.	+	.	ID=Os02t0185200-01;Name=Os02t0185200-01;Locus_id=Os02g0185200;Note=CytoChrome P450 family protein.;Transcript_evidence=AK107034 (DDBJ%2C Best hit);ORF_evidence=B6TWF0 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=002-121-B07;Expression=AK107034;TENOR=Os02t0185200-01;KEGG=Os02t0185200-01
Chr02	irgsp1_rep	five_prime_UTR	4754173	4754177	.	+	.	Parent=Os02t0185200-01
Chr02	irgsp1_rep	CDS	4754178	4755095	.	+	0	Parent=Os02t0185200-01
Chr02	irgsp1_rep	CDS	4755549	4756175	.	+	0	Parent=Os02t0185200-01
Chr02	irgsp1_rep	three_prime_UTR	4756176	4756298	.	+	.	Parent=Os02t0185200-01
Chr02	irgsp1_rep	mRNA	4765151	4767187	.	+	.	ID=Os02t0185300-01;Name=Os02t0185300-01;Locus_id=Os02g0185300;Note=CytoChrome P450 family protein.;Transcript_evidence=AK068907 (DDBJ%2C Best hit);ORF_evidence=B9F3Q7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J023002L07;Expression=AK068907;TENOR=Os02t0185300-01;KEGG=Os02t0185300-01
Chr02	irgsp1_rep	five_prime_UTR	4765151	4765196	.	+	.	Parent=Os02t0185300-01
Chr02	irgsp1_rep	CDS	4765197	4766147	.	+	0	Parent=Os02t0185300-01
Chr02	irgsp1_rep	CDS	4766395	4767009	.	+	0	Parent=Os02t0185300-01
Chr02	irgsp1_rep	three_prime_UTR	4767010	4767187	.	+	.	Parent=Os02t0185300-01
Chr02	irgsp1_rep	mRNA	4765274	4767003	.	-	.	ID=Os02t0185350-00;Name=Os02t0185350-00;Locus_id=Os02g0185350;Note=Hypothetical protein.;Transcript_evidence=tplb0041k22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0185350-00
Chr02	irgsp1_rep	five_prime_UTR	4766390	4767003	.	-	.	Parent=Os02t0185350-00
Chr02	irgsp1_rep	five_prime_UTR	4766004	4766142	.	-	.	Parent=Os02t0185350-00
Chr02	irgsp1_rep	CDS	4765274	4766003	.	-	0	Parent=Os02t0185350-00
Chr02	irgsp1_rep	mRNA	4768846	4771113	.	+	.	ID=Os02t0185400-01;Name=Os02t0185400-01;Locus_id=Os02g0185400;Note=CytoChrome P450 domain containing protein.;Transcript_evidence=AK241880 (DDBJ%2C Best hit);ORF_evidence=NP_001046113.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);NIAS_FLcDNA=J065218M03;TENOR=Os02t0185400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	4768846	4769778	.	+	0	Parent=Os02t0185400-01
Chr02	irgsp1_rep	CDS	4770400	4770447	.	+	0	Parent=Os02t0185400-01
Chr02	irgsp1_rep	three_prime_UTR	4770448	4771113	.	+	.	Parent=Os02t0185400-01
Chr02	irgsp1_rep	mRNA	4774336	4776253	.	+	.	ID=Os02t0185500-00;Name=Os02t0185500-00;Locus_id=Os02g0185500;Oryzabase Gene Symbol Synonym(s)=OsEnS-27;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 27;Note=Similar to cDNA%2C clone: J065218M03%2C full insert sequence.;Transcript_evidence=ab initio prediction;ORF_evidence=B7F939 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);Oryzabase=18364;TENOR=Os02t0185500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	4774336	4775265	.	+	0	Parent=Os02t0185500-00
Chr02	irgsp1_rep	CDS	4775639	4775868	.	+	0	Parent=Os02t0185500-00
Chr02	irgsp1_rep	CDS	4775950	4776253	.	+	1	Parent=Os02t0185500-00
Chr02	irgsp1_rep	mRNA	4774362	4776220	.	-	.	ID=Os02t0185633-00;Name=Os02t0185633-00;Locus_id=Os02g0185633;Note=Hypothetical protein.;Transcript_evidence=tplb0041k22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0185633-00
Chr02	irgsp1_rep	five_prime_UTR	4775637	4776220	.	-	.	Parent=Os02t0185633-00
Chr02	irgsp1_rep	five_prime_UTR	4775052	4775262	.	-	.	Parent=Os02t0185633-00
Chr02	irgsp1_rep	CDS	4774362	4775051	.	-	0	Parent=Os02t0185633-00
Chr02	irgsp1_rep	mRNA	4785252	4787028	.	-	.	ID=Os02t0185766-00;Name=Os02t0185766-00;Locus_id=Os02g0185766;Note=Hypothetical protein.;Transcript_evidence=tplb0024g24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0185766-00
Chr02	irgsp1_rep	five_prime_UTR	4786449	4787028	.	-	.	Parent=Os02t0185766-00
Chr02	irgsp1_rep	CDS	4786419	4786448	.	-	0	Parent=Os02t0185766-00
Chr02	irgsp1_rep	CDS	4785252	4786113	.	-	0	Parent=Os02t0185766-00
Chr02	irgsp1_rep	mRNA	4785324	4787163	.	+	.	ID=Os02t0185900-01;Name=Os02t0185900-01;Locus_id=Os02g0185900;Note=Hypothetical conserved gene.;Transcript_evidence=AK241581 (DDBJ%2C Best hit);ORF_evidence=Q6ZIG8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J065181K09;TENOR=Os02t0185900-01;KEGG=Os02t0185900-01
Chr02	irgsp1_rep	five_prime_UTR	4785324	4785324	.	+	.	Parent=Os02t0185900-01
Chr02	irgsp1_rep	CDS	4785325	4786158	.	+	0	Parent=Os02t0185900-01
Chr02	irgsp1_rep	CDS	4786421	4787041	.	+	0	Parent=Os02t0185900-01
Chr02	irgsp1_rep	three_prime_UTR	4787042	4787163	.	+	.	Parent=Os02t0185900-01
Chr02	irgsp1_rep	mRNA	4791404	4793451	.	+	.	ID=Os02t0186100-01;Name=Os02t0186100-01;Locus_id=Os02g0186100;Note=Hypothetical conserved gene.;Transcript_evidence=AK287892 (DDBJ%2C Best hit);ORF_evidence=Q6ZIG8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);NIAS_FLcDNA=J065209M10;TENOR=Os02t0186100-01;KEGG=Os02t0186100-01
Chr02	irgsp1_rep	five_prime_UTR	4791404	4791456	.	+	.	Parent=Os02t0186100-01
Chr02	irgsp1_rep	CDS	4791457	4792263	.	+	0	Parent=Os02t0186100-01
Chr02	irgsp1_rep	three_prime_UTR	4792264	4792372	.	+	.	Parent=Os02t0186100-01
Chr02	irgsp1_rep	three_prime_UTR	4792621	4793451	.	+	.	Parent=Os02t0186100-01
Chr02	irgsp1_rep	mRNA	4796037	4797937	.	+	.	ID=Os02t0186200-00;Name=Os02t0186200-00;Locus_id=Os02g0186200;Oryzabase Gene Symbol Synonym(s)=OsEnS-28;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 28;Note=Similar to CytoChrome P450 CYP71K14.;Transcript_evidence=AK365638 (DDBJ);ORF_evidence=Q10HC4 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);Oryzabase=18365;TENOR=Os02t0186200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	4796037	4796081	.	+	.	Parent=Os02t0186200-00
Chr02	irgsp1_rep	CDS	4796082	4797035	.	+	0	Parent=Os02t0186200-00
Chr02	irgsp1_rep	CDS	4797272	4797937	.	+	0	Parent=Os02t0186200-00
Chr02	irgsp1_rep	mRNA	4803290	4806457	.	-	.	ID=Os02t0186400-01;Name=Os02t0186400-01;Locus_id=Os02g0186400;Note=Spectrin repeat containing protein.;Transcript_evidence=AK067643 (DDBJ%2C Best hit);ORF_evidence=B8AJ77 (UniProt);NIAS_FLcDNA=J013111D04;Expression=AK067643;TENOR=Os02t0186400-01;KEGG=Os02t0186400-01
Chr02	irgsp1_rep	five_prime_UTR	4806324	4806457	.	-	.	Parent=Os02t0186400-01
Chr02	irgsp1_rep	CDS	4806234	4806323	.	-	0	Parent=Os02t0186400-01
Chr02	irgsp1_rep	CDS	4803467	4805668	.	-	0	Parent=Os02t0186400-01
Chr02	irgsp1_rep	three_prime_UTR	4803290	4803466	.	-	.	Parent=Os02t0186400-01
Chr02	irgsp1_rep	mRNA	4808249	4817119	.	-	.	ID=Os02t0186500-01;Name=Os02t0186500-01;Locus_id=Os02g0186500;CGSNL Gene Symbol=RLCK64;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 64;Oryzabase Gene Symbol Synonym(s)=OsRLCK64;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 64;Note=Similar to Protein kinase-like protein.;Transcript_evidence=AK068056 (DDBJ%2C Best hit);ORF_evidence=NP_001148756.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013132O11;Oryzabase=18780;TENOR=Os02t0186500-01
Chr02	irgsp1_rep	five_prime_UTR	4816865	4817119	.	-	.	Parent=Os02t0186500-01
Chr02	irgsp1_rep	CDS	4816830	4816864	.	-	0	Parent=Os02t0186500-01
Chr02	irgsp1_rep	CDS	4815990	4816149	.	-	1	Parent=Os02t0186500-01
Chr02	irgsp1_rep	CDS	4809293	4809555	.	-	0	Parent=Os02t0186500-01
Chr02	irgsp1_rep	CDS	4808508	4809183	.	-	1	Parent=Os02t0186500-01
Chr02	irgsp1_rep	three_prime_UTR	4808249	4808507	.	-	.	Parent=Os02t0186500-01
Chr02	irgsp1_rep	mRNA	4808249	4817094	.	-	.	ID=Os02t0186500-02;Name=Os02t0186500-02;Locus_id=Os02g0186500;CGSNL Gene Symbol=RLCK64;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 64;Oryzabase Gene Symbol Synonym(s)=OsRLCK64;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 64;Note=Similar to Protein kinase-like protein.;Transcript_evidence=AK099031 (DDBJ%2C Best hit);ORF_evidence=NP_001148756.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013127K13;Oryzabase=18780;TENOR=Os02t0186500-02
Chr02	irgsp1_rep	five_prime_UTR	4816865	4817094	.	-	.	Parent=Os02t0186500-02
Chr02	irgsp1_rep	CDS	4816830	4816864	.	-	0	Parent=Os02t0186500-02
Chr02	irgsp1_rep	CDS	4815990	4816149	.	-	1	Parent=Os02t0186500-02
Chr02	irgsp1_rep	CDS	4809293	4809555	.	-	0	Parent=Os02t0186500-02
Chr02	irgsp1_rep	CDS	4808508	4809183	.	-	1	Parent=Os02t0186500-02
Chr02	irgsp1_rep	three_prime_UTR	4808249	4808507	.	-	.	Parent=Os02t0186500-02
Chr02	irgsp1_rep	mRNA	4820585	4822603	.	+	.	ID=Os02t0186700-01;Name=Os02t0186700-01;Locus_id=Os02g0186700;Note=Conserved hypothetical protein.;Transcript_evidence=AK064492 (DDBJ%2C Best hit);ORF_evidence=A2X1S0 (UniProt);NIAS_FLcDNA=002-111-C05;TENOR=Os02t0186700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	4820585	4820586	.	+	.	Parent=Os02t0186700-01
Chr02	irgsp1_rep	CDS	4820587	4820739	.	+	0	Parent=Os02t0186700-01
Chr02	irgsp1_rep	CDS	4821037	4821089	.	+	0	Parent=Os02t0186700-01
Chr02	irgsp1_rep	CDS	4821673	4821879	.	+	1	Parent=Os02t0186700-01
Chr02	irgsp1_rep	CDS	4821978	4822058	.	+	1	Parent=Os02t0186700-01
Chr02	irgsp1_rep	CDS	4822140	4822305	.	+	1	Parent=Os02t0186700-01
Chr02	irgsp1_rep	three_prime_UTR	4822306	4822603	.	+	.	Parent=Os02t0186700-01
Chr02	irgsp1_rep	mRNA	4824246	4825855	.	+	.	ID=Os02t0186800-00;Name=Os02t0186800-00;Locus_id=Os02g0186800;Note=CytoChrome P450 family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B6TEH7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os02t0186800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	4824246	4825142	.	+	0	Parent=Os02t0186800-00
Chr02	irgsp1_rep	CDS	4825223	4825855	.	+	0	Parent=Os02t0186800-00
Chr02	irgsp1_rep	mRNA	4826405	4828206	.	+	.	ID=Os02t0186900-01;Name=Os02t0186900-01;Locus_id=Os02g0186900;Note=CytoChrome P450 family protein.;Transcript_evidence=AK243342 (DDBJ%2C Best hit);ORF_evidence=B9F3R2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J100059N12;Oryzabase=22498;TENOR=Os02t0186900-01;KEGG=Os02t0186900-01
Chr02	irgsp1_rep	five_prime_UTR	4826405	4826413	.	+	.	Parent=Os02t0186900-01
Chr02	irgsp1_rep	CDS	4826414	4827346	.	+	0	Parent=Os02t0186900-01
Chr02	irgsp1_rep	CDS	4827440	4828063	.	+	0	Parent=Os02t0186900-01
Chr02	irgsp1_rep	three_prime_UTR	4828064	4828206	.	+	.	Parent=Os02t0186900-01
Chr02	irgsp1_rep	mRNA	4829677	4830263	.	-	.	ID=Os02t0186950-00;Name=Os02t0186950-00;Locus_id=Os02g0186950;Note=Hypothetical protein.;Transcript_evidence=EU942896 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0186950-00
Chr02	irgsp1_rep	five_prime_UTR	4830262	4830263	.	-	.	Parent=Os02t0186950-00
Chr02	irgsp1_rep	CDS	4829839	4830261	.	-	0	Parent=Os02t0186950-00
Chr02	irgsp1_rep	three_prime_UTR	4829677	4829838	.	-	.	Parent=Os02t0186950-00
Chr02	irgsp1_rep	mRNA	4829205	4830333	.	+	.	ID=Os02t0187000-00;Name=Os02t0187000-00;Locus_id=Os02g0187000;Note=Similar to CytoChrome P450 CYP71K14.;Transcript_evidence=ab initio prediction;ORF_evidence=B6TEH7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os02t0187000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	4829205	4829588	.	+	0	Parent=Os02t0187000-00
Chr02	irgsp1_rep	CDS	4829680	4830333	.	+	0	Parent=Os02t0187000-00
Chr02	irgsp1_rep	mRNA	4831212	4833985	.	+	.	ID=Os02t0187100-00;Name=Os02t0187100-00;Locus_id=Os02g0187100;Oryzabase Gene Symbol Synonym(s)=OsCYL1%2C CYL1;Oryzabase Gene Name Synonym(s)=cyclase-like 1;Note=Similar to cyclase.;Transcript_evidence=BT088287 (DDBJ);ORF_evidence=NP_001150336.1 (RefSeq);InterPro=Putative cyclase (IPR007325);Oryzabase=19885;TENOR=Os02t0187100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	4831212	4831623	.	+	0	Parent=Os02t0187100-00
Chr02	irgsp1_rep	CDS	4833359	4833403	.	+	2	Parent=Os02t0187100-00
Chr02	irgsp1_rep	CDS	4833615	4833985	.	+	2	Parent=Os02t0187100-00
Chr02	irgsp1_rep	mRNA	4838499	4841890	.	-	.	ID=Os02t0187200-01;Name=Os02t0187200-01;Locus_id=Os02g0187200;Note=Exostosin-like family protein.;Transcript_evidence=AK065525 (DDBJ%2C Best hit);ORF_evidence=B6TA15 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);NIAS_FLcDNA=J013030F22;Expression=AK065525;TENOR=Os02t0187200-01;KEGG=Os02t0187200-01 (EC:2.4.1.224%2C EC:2.4.1.225)
Chr02	irgsp1_rep	five_prime_UTR	4841823	4841890	.	-	.	Parent=Os02t0187200-01
Chr02	irgsp1_rep	CDS	4841394	4841822	.	-	0	Parent=Os02t0187200-01
Chr02	irgsp1_rep	CDS	4840348	4840634	.	-	0	Parent=Os02t0187200-01
Chr02	irgsp1_rep	CDS	4839666	4839898	.	-	1	Parent=Os02t0187200-01
Chr02	irgsp1_rep	CDS	4839374	4839531	.	-	2	Parent=Os02t0187200-01
Chr02	irgsp1_rep	CDS	4838980	4839081	.	-	0	Parent=Os02t0187200-01
Chr02	irgsp1_rep	three_prime_UTR	4838499	4838979	.	-	.	Parent=Os02t0187200-01
Chr02	irgsp1_rep	mRNA	4843988	4844463	.	-	.	ID=Os02t0187300-01;Name=Os02t0187300-01;Locus_id=Os02g0187300;Note=Similar to predicted protein.;Transcript_evidence=AK062633 (DDBJ%2C Best hit);ORF_evidence=B9F3R4 (UniProt);NIAS_FLcDNA=001-105-C11;Expression=AK062633;TENOR=Os02t0187300-01;KEGG=Os02t0187300-01
Chr02	irgsp1_rep	five_prime_UTR	4844463	4844463	.	-	.	Parent=Os02t0187300-01
Chr02	irgsp1_rep	CDS	4844436	4844462	.	-	0	Parent=Os02t0187300-01
Chr02	irgsp1_rep	CDS	4844266	4844349	.	-	0	Parent=Os02t0187300-01
Chr02	irgsp1_rep	three_prime_UTR	4843988	4844265	.	-	.	Parent=Os02t0187300-01
Chr02	irgsp1_rep	mRNA	4847753	4852502	.	-	.	ID=Os02t0187400-01;Name=Os02t0187400-01;Locus_id=Os02g0187400;Note=PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain domain containing protein.;Transcript_evidence=AK068914 (DDBJ%2C Best hit);ORF_evidence=XP_002866252.1 (RefSeq);GO=Biological Process: glycerol metabolic process (GO:0006071),Biological Process: lipid metabolic process (GO:0006629),Molecular Function: phosphoric diester hydrolase activity (GO:0008081),Molecular Function: glycerophosphodiester phosphodiesterase activity (GO:0008889);InterPro=Glycerophosphoryl diester phosphodiesterase (IPR004129),PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain (IPR017946);NIAS_FLcDNA=J023002M10;Expression=AK068914;TENOR=Os02t0187400-01;KEGG=Os02t0187400-01
Chr02	irgsp1_rep	five_prime_UTR	4852453	4852502	.	-	.	Parent=Os02t0187400-01
Chr02	irgsp1_rep	five_prime_UTR	4852128	4852145	.	-	.	Parent=Os02t0187400-01
Chr02	irgsp1_rep	CDS	4852028	4852127	.	-	0	Parent=Os02t0187400-01
Chr02	irgsp1_rep	CDS	4851623	4851919	.	-	2	Parent=Os02t0187400-01
Chr02	irgsp1_rep	CDS	4851220	4851329	.	-	2	Parent=Os02t0187400-01
Chr02	irgsp1_rep	CDS	4850608	4851109	.	-	0	Parent=Os02t0187400-01
Chr02	irgsp1_rep	CDS	4850461	4850508	.	-	2	Parent=Os02t0187400-01
Chr02	irgsp1_rep	CDS	4850075	4850362	.	-	2	Parent=Os02t0187400-01
Chr02	irgsp1_rep	CDS	4849819	4849958	.	-	2	Parent=Os02t0187400-01
Chr02	irgsp1_rep	CDS	4849210	4849696	.	-	0	Parent=Os02t0187400-01
Chr02	irgsp1_rep	CDS	4848134	4848197	.	-	2	Parent=Os02t0187400-01
Chr02	irgsp1_rep	CDS	4847866	4847941	.	-	1	Parent=Os02t0187400-01
Chr02	irgsp1_rep	three_prime_UTR	4847753	4847865	.	-	.	Parent=Os02t0187400-01
Chr02	irgsp1_rep	mRNA	4855965	4859029	.	-	.	ID=Os02t0187500-01;Name=Os02t0187500-01;Locus_id=Os02g0187500;Note=Uncharacterised protein family UPF0047 domain containing protein.;Transcript_evidence=AK069039 (DDBJ%2C Best hit);ORF_evidence=A2X1S7 (UniProt);InterPro=Uncharacterised protein family UPF0047 (IPR001602);NIAS_FLcDNA=J023004P18;Expression=AK069039;TENOR=Os02t0187500-01;KEGG=Os02t0187500-01
Chr02	irgsp1_rep	five_prime_UTR	4858936	4859029	.	-	.	Parent=Os02t0187500-01
Chr02	irgsp1_rep	CDS	4858861	4858935	.	-	0	Parent=Os02t0187500-01
Chr02	irgsp1_rep	CDS	4858723	4858783	.	-	0	Parent=Os02t0187500-01
Chr02	irgsp1_rep	CDS	4857992	4858086	.	-	2	Parent=Os02t0187500-01
Chr02	irgsp1_rep	CDS	4857870	4857903	.	-	0	Parent=Os02t0187500-01
Chr02	irgsp1_rep	CDS	4857610	4857664	.	-	2	Parent=Os02t0187500-01
Chr02	irgsp1_rep	CDS	4857467	4857509	.	-	1	Parent=Os02t0187500-01
Chr02	irgsp1_rep	CDS	4856200	4856271	.	-	0	Parent=Os02t0187500-01
Chr02	irgsp1_rep	three_prime_UTR	4855965	4856199	.	-	.	Parent=Os02t0187500-01
Chr02	irgsp1_rep	mRNA	4855975	4858042	.	-	.	ID=Os02t0187500-02;Name=Os02t0187500-02;Locus_id=Os02g0187500;Note=Similar to predicted protein.;Transcript_evidence=AK058222 (DDBJ%2C Best hit);ORF_evidence=A2X1S7 (UniProt);InterPro=Uncharacterised protein family UPF0047 (IPR001602);NIAS_FLcDNA=001-010-G03;Expression=AK058222;TENOR=Os02t0187500-02;KEGG=Os02t0187500-02
Chr02	irgsp1_rep	CDS	4857992	4858042	.	-	0	Parent=Os02t0187500-02
Chr02	irgsp1_rep	CDS	4857870	4857903	.	-	0	Parent=Os02t0187500-02
Chr02	irgsp1_rep	CDS	4857610	4857664	.	-	2	Parent=Os02t0187500-02
Chr02	irgsp1_rep	CDS	4857467	4857509	.	-	1	Parent=Os02t0187500-02
Chr02	irgsp1_rep	CDS	4856200	4856271	.	-	0	Parent=Os02t0187500-02
Chr02	irgsp1_rep	three_prime_UTR	4855975	4856199	.	-	.	Parent=Os02t0187500-02
Chr02	irgsp1_rep	mRNA	4859722	4862758	.	+	.	ID=Os02t0187600-01;Name=Os02t0187600-01;Locus_id=Os02g0187600;Note=Similar to Tic21.;Transcript_evidence=AK109387 (DDBJ%2C Best hit);ORF_evidence=Q09S70 (UniProt);InterPro=Protein of unknown function DUF3611 (IPR022051);NIAS_FLcDNA=006-211-D08;Expression=AK109387;TENOR=Os02t0187600-01;KEGG=Os02t0187600-01
Chr02	irgsp1_rep	five_prime_UTR	4859722	4859764	.	+	.	Parent=Os02t0187600-01
Chr02	irgsp1_rep	CDS	4859765	4860019	.	+	0	Parent=Os02t0187600-01
Chr02	irgsp1_rep	CDS	4860907	4861164	.	+	0	Parent=Os02t0187600-01
Chr02	irgsp1_rep	CDS	4861397	4861600	.	+	0	Parent=Os02t0187600-01
Chr02	irgsp1_rep	CDS	4862506	4862607	.	+	0	Parent=Os02t0187600-01
Chr02	irgsp1_rep	three_prime_UTR	4862608	4862758	.	+	.	Parent=Os02t0187600-01
Chr02	irgsp1_rep	mRNA	4859744	4862765	.	+	.	ID=Os02t0187600-02;Name=Os02t0187600-02;Locus_id=Os02g0187600;Note=Similar to Tic21.;Transcript_evidence=AK069783 (DDBJ%2C Best hit);ORF_evidence=Q09S70 (UniProt);InterPro=Protein of unknown function DUF3611 (IPR022051);NIAS_FLcDNA=J023030E23;Expression=AK069783;TENOR=Os02t0187600-02;KEGG=Os02t0187600-02
Chr02	irgsp1_rep	five_prime_UTR	4859744	4859764	.	+	.	Parent=Os02t0187600-02
Chr02	irgsp1_rep	CDS	4859765	4860019	.	+	0	Parent=Os02t0187600-02
Chr02	irgsp1_rep	CDS	4860907	4861164	.	+	0	Parent=Os02t0187600-02
Chr02	irgsp1_rep	CDS	4861397	4861600	.	+	0	Parent=Os02t0187600-02
Chr02	irgsp1_rep	CDS	4862506	4862607	.	+	0	Parent=Os02t0187600-02
Chr02	irgsp1_rep	three_prime_UTR	4862608	4862765	.	+	.	Parent=Os02t0187600-02
Chr02	irgsp1_rep	mRNA	4867738	4868831	.	+	.	ID=Os02t0187700-00;Name=Os02t0187700-00;Locus_id=Os02g0187700;Note=Similar to Myb-related protein B (B-Myb) (Myb-related protein 1) (XMYB1).;Transcript_evidence=DQ353858 (DDBJ);ORF_evidence=B4FMQ3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);TENOR=Os02t0187700-00;KEGG=Os02t0187700-00
Chr02	irgsp1_rep	five_prime_UTR	4867738	4867739	.	+	.	Parent=Os02t0187700-00
Chr02	irgsp1_rep	CDS	4867740	4868645	.	+	0	Parent=Os02t0187700-00
Chr02	irgsp1_rep	three_prime_UTR	4868646	4868831	.	+	.	Parent=Os02t0187700-00
Chr02	irgsp1_rep	mRNA	4870151	4874038	.	-	.	ID=Os02t0187800-01;Name=Os02t0187800-01;Locus_id=Os02g0187800;RAP-DB Gene Symbol Synonym(s)=GH2%2C gh2%2C CAD2%2C CAD%2C OsCAD2;RAP-DB Gene Name Synonym(s)=GOLD HULL AND INTERNODE 2%2C gold hull and internode2%2C gold hull and internode-2%2C Cinnamyl alcohol dehydrogenase 2%2C Sinapyl alcohol dehydrogenase%2C Protein GOLD HULL AND INTERNODE 2%2C Cinnamyl alcohol dehydrogenase;CGSNL Gene Symbol=GH2;CGSNL Gene Name=GOLD HULL AND INTERNODE 2;Oryzabase Gene Symbol Synonym(s)=gh2%2C CAD2%2C CAD%2C OsCAD2%2C GH2;Oryzabase Gene Name Synonym(s)=gold hull and internode2%2C gold hull and internode-2%2C Cinnamyl alcohol dehydrogenase 2%2C Sinapyl alcohol dehydrogenase%2C Protein GOLD HULL AND INTERNODE 2%2C Cinnamyl alcohol dehydrogenase;Note=Cinnamyl-alcohol dehydrogenase%2C Lignin biosynthesis%2C Monolignol biosynthesis;Transcript_evidence=AK105011,DQ234272 (indica);ORF_evidence=Q6ZHS4;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),GroES-like (IPR011032),Polyketide synthase%2C enoylreductase domain (IPR020843),Alcohol dehydrogenase%2C N-terminal (IPR013154),NAD(P)-binding domain (IPR016040),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase%2C zinc-type%2C conserved site (IPR002328);NIAS_FLcDNA=001-007-H09;Manual Curation=June 8%2C 2016;Literature_PMID=21912859,16443696;Oryzabase=507;TENOR=Os02t0187800-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	4873905	4874038	.	-	.	Parent=Os02t0187800-01
Chr02	irgsp1_rep	CDS	4873816	4873904	.	-	0	Parent=Os02t0187800-01
Chr02	irgsp1_rep	CDS	4872877	4872990	.	-	1	Parent=Os02t0187800-01
Chr02	irgsp1_rep	CDS	4872021	4872248	.	-	1	Parent=Os02t0187800-01
Chr02	irgsp1_rep	CDS	4870318	4870978	.	-	1	Parent=Os02t0187800-01
Chr02	irgsp1_rep	three_prime_UTR	4870151	4870317	.	-	.	Parent=Os02t0187800-01
Chr02	irgsp1_rep	mRNA	4870185	4872957	.	-	.	ID=Os02t0187800-02;Name=Os02t0187800-02;Locus_id=Os02g0187800;CGSNL Gene Symbol=GH2;CGSNL Gene Name=GOLD HULL AND INTERNODE 2;Oryzabase Gene Symbol Synonym(s)=gh2%2C CAD2%2C CAD%2C OsCAD2%2C GH2;Oryzabase Gene Name Synonym(s)=gold hull and internode2%2C gold hull and internode-2%2C Cinnamyl alcohol dehydrogenase 2%2C Sinapyl alcohol dehydrogenase%2C Protein GOLD HULL AND INTERNODE 2%2C Cinnamyl alcohol dehydrogenase;Note=Similar to Cinnamyl alcohol dehydrogenase 1a.;Transcript_evidence=AK059804 (DDBJ%2C Best hit);ORF_evidence=Q38G74 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),Alcohol dehydrogenase%2C zinc-type%2C conserved site (IPR002328),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040),Polyketide synthase%2C enoylreductase (IPR020843);NIAS_FLcDNA=006-204-G04;Oryzabase=507;Expression=AK059804;TENOR=Os02t0187800-02;KEGG=Os02t0187800-02 (EC:1.1.1.195)
Chr02	irgsp1_rep	five_prime_UTR	4872957	4872957	.	-	.	Parent=Os02t0187800-02
Chr02	irgsp1_rep	CDS	4872877	4872956	.	-	0	Parent=Os02t0187800-02
Chr02	irgsp1_rep	CDS	4872021	4872248	.	-	1	Parent=Os02t0187800-02
Chr02	irgsp1_rep	CDS	4870318	4870978	.	-	1	Parent=Os02t0187800-02
Chr02	irgsp1_rep	three_prime_UTR	4870185	4870317	.	-	.	Parent=Os02t0187800-02
Chr02	irgsp1_rep	mRNA	4888511	4890272	.	-	.	ID=Os02t0188000-01;Name=Os02t0188000-01;Locus_id=Os02g0188000;CGSNL Gene Symbol=UGT84C1;CGSNL Gene Name=UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 84C1;Oryzabase Gene Symbol Synonym(s)=OsUGT84C1;Oryzabase Gene Name Synonym(s)=UDP-glucose-dependent glycosyltransferase 84C1%2C cinnamate beta-D-glucosyltransferase;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK105236 (DDBJ%2C Best hit);ORF_evidence=C4MF33 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=001-113-A01;Oryzabase=21823;Expression=AK105236;TENOR=Os02t0188000-01;KEGG=Os02t0188000-01
Chr02	irgsp1_rep	five_prime_UTR	4890160	4890272	.	-	.	Parent=Os02t0188000-01
Chr02	irgsp1_rep	CDS	4888923	4890159	.	-	0	Parent=Os02t0188000-01
Chr02	irgsp1_rep	CDS	4888726	4888775	.	-	2	Parent=Os02t0188000-01
Chr02	irgsp1_rep	three_prime_UTR	4888511	4888725	.	-	.	Parent=Os02t0188000-01
Chr02	irgsp1_rep	mRNA	4901744	4905927	.	-	.	ID=Os02t0188201-01;Name=Os02t0188201-01;Locus_id=Os02g0188201;Note=Conserved hypothetical protein.;Transcript_evidence=AK288920 (DDBJ%2C Best hit);ORF_evidence=Q6ZEY1 (UniProt);NIAS_FLcDNA=J090081L22;TENOR=Os02t0188201-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	4902075	4905927	.	-	.	Parent=Os02t0188201-01
Chr02	irgsp1_rep	CDS	4901880	4902074	.	-	0	Parent=Os02t0188201-01
Chr02	irgsp1_rep	three_prime_UTR	4901744	4901879	.	-	.	Parent=Os02t0188201-01
Chr02	irgsp1_rep	mRNA	4908079	4908668	.	+	.	ID=Os02t0188400-01;Name=Os02t0188400-01;Locus_id=Os02g0188400;Note=Hypothetical protein.;Transcript_evidence=AK111118 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-176-B11;TENOR=Os02t0188400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	4908079	4908303	.	+	0	Parent=Os02t0188400-01
Chr02	irgsp1_rep	three_prime_UTR	4908304	4908668	.	+	.	Parent=Os02t0188400-01
Chr02	irgsp1_rep	mRNA	4908964	4911334	.	-	.	ID=Os02t0188500-01;Name=Os02t0188500-01;Locus_id=Os02g0188500;Oryzabase Gene Symbol Synonym(s)=OsSTA50;Note=Ubiquitin domain containing protein.;Transcript_evidence=AK106917 (DDBJ%2C Best hit);ORF_evidence=B9F3R6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin (IPR000626),Ubiquitin supergroup (IPR019955);NIAS_FLcDNA=002-119-B01;Oryzabase=19354;Expression=AK106917;TENOR=Os02t0188500-01;KEGG=Os02t0188500-01
Chr02	irgsp1_rep	five_prime_UTR	4911181	4911334	.	-	.	Parent=Os02t0188500-01
Chr02	irgsp1_rep	CDS	4911179	4911180	.	-	0	Parent=Os02t0188500-01
Chr02	irgsp1_rep	CDS	4910701	4911077	.	-	1	Parent=Os02t0188500-01
Chr02	irgsp1_rep	CDS	4910497	4910599	.	-	2	Parent=Os02t0188500-01
Chr02	irgsp1_rep	CDS	4910174	4910273	.	-	1	Parent=Os02t0188500-01
Chr02	irgsp1_rep	CDS	4909484	4909545	.	-	0	Parent=Os02t0188500-01
Chr02	irgsp1_rep	CDS	4909034	4909364	.	-	1	Parent=Os02t0188500-01
Chr02	irgsp1_rep	three_prime_UTR	4908964	4909033	.	-	.	Parent=Os02t0188500-01
Chr02	irgsp1_rep	mRNA	4908958	4911255	.	-	.	ID=Os02t0188500-02;Name=Os02t0188500-02;Locus_id=Os02g0188500;Oryzabase Gene Symbol Synonym(s)=OsSTA50;Note=Ubiquitin domain containing protein.;Transcript_evidence=AK102004 (DDBJ%2C Best hit);ORF_evidence=B9F3R6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin (IPR000626),Ubiquitin supergroup (IPR019955);NIAS_FLcDNA=J033079N13;Oryzabase=19354;TENOR=Os02t0188500-02
Chr02	irgsp1_rep	five_prime_UTR	4911181	4911255	.	-	.	Parent=Os02t0188500-02
Chr02	irgsp1_rep	CDS	4911179	4911180	.	-	0	Parent=Os02t0188500-02
Chr02	irgsp1_rep	CDS	4910701	4911077	.	-	1	Parent=Os02t0188500-02
Chr02	irgsp1_rep	CDS	4910497	4910599	.	-	2	Parent=Os02t0188500-02
Chr02	irgsp1_rep	CDS	4910174	4910273	.	-	1	Parent=Os02t0188500-02
Chr02	irgsp1_rep	CDS	4909484	4909545	.	-	0	Parent=Os02t0188500-02
Chr02	irgsp1_rep	CDS	4909034	4909364	.	-	1	Parent=Os02t0188500-02
Chr02	irgsp1_rep	three_prime_UTR	4908958	4909033	.	-	.	Parent=Os02t0188500-02
Chr02	irgsp1_rep	mRNA	4913036	4913371	.	-	.	ID=Os02t0188600-00;Name=Os02t0188600-00;Locus_id=Os02g0188600;Note=Hypothetical conserved gene.;Transcript_evidence=tplb0008n22 (Wheat FLcDNA);ORF_evidence=NP_001046136.2 (RefSeq);TENOR=Os02t0188600-00;KEGG=Os02t0188600-00
Chr02	irgsp1_rep	CDS	4913036	4913371	.	-	0	Parent=Os02t0188600-00
Chr02	irgsp1_rep	mRNA	4936530	4937799	.	-	.	ID=Os02t0189000-01;Name=Os02t0189000-01;Locus_id=Os02g0189000;Note=Similar to Chloroplast 30S ribosomal protein S21 (Fragment).;Transcript_evidence=AK120425 (DDBJ%2C Best hit);ORF_evidence=NP_001151834.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S21 (IPR001911);NIAS_FLcDNA=J013095G03;Expression=AK120425;TENOR=Os02t0189000-01;KEGG=Os02t0189000-01
Chr02	irgsp1_rep	five_prime_UTR	4937688	4937799	.	-	.	Parent=Os02t0189000-01
Chr02	irgsp1_rep	CDS	4937356	4937687	.	-	0	Parent=Os02t0189000-01
Chr02	irgsp1_rep	CDS	4936698	4936806	.	-	1	Parent=Os02t0189000-01
Chr02	irgsp1_rep	three_prime_UTR	4936530	4936697	.	-	.	Parent=Os02t0189000-01
Chr02	irgsp1_rep	mRNA	4938785	4942005	.	-	.	ID=Os02t0189100-01;Name=Os02t0189100-01;Locus_id=Os02g0189100;Oryzabase Gene Symbol Synonym(s)=OsMED11_1%2C MED11_1;Oryzabase Gene Name Synonym(s)=Mediator 11_1;Note=Mediator complex%2C subunit Med11 domain containing protein.;Transcript_evidence=AK111066 (DDBJ%2C Best hit);ORF_evidence=XP_002453440.1 (RefSeq);GO=Biological Process: regulation of transcription from RNA polymerase II promoter (GO:0006357),Cellular Component: mediator complex (GO:0016592),Molecular Function: RNA polymerase II transcription cofactor activity (GO:0001104);InterPro=Mediator complex%2C subunit Med11 (IPR019404);NIAS_FLcDNA=002-175-E01;Oryzabase=20966;Expression=AK111066;TENOR=Os02t0189100-01;KEGG=Os02t0189100-01
Chr02	irgsp1_rep	five_prime_UTR	4941949	4942005	.	-	.	Parent=Os02t0189100-01
Chr02	irgsp1_rep	CDS	4941895	4941948	.	-	0	Parent=Os02t0189100-01
Chr02	irgsp1_rep	CDS	4941654	4941770	.	-	0	Parent=Os02t0189100-01
Chr02	irgsp1_rep	CDS	4940026	4940202	.	-	0	Parent=Os02t0189100-01
Chr02	irgsp1_rep	three_prime_UTR	4939997	4940025	.	-	.	Parent=Os02t0189100-01
Chr02	irgsp1_rep	three_prime_UTR	4938785	4939039	.	-	.	Parent=Os02t0189100-01
Chr02	irgsp1_rep	mRNA	4940048	4942008	.	+	.	ID=Os02t0189150-00;Name=Os02t0189150-00;Locus_id=Os02g0189150;Note=Hypothetical gene.;Transcript_evidence=BT019267 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0189150-00
Chr02	irgsp1_rep	five_prime_UTR	4940048	4940191	.	+	.	Parent=Os02t0189150-00
Chr02	irgsp1_rep	five_prime_UTR	4941642	4941647	.	+	.	Parent=Os02t0189150-00
Chr02	irgsp1_rep	CDS	4941648	4941768	.	+	0	Parent=Os02t0189150-00
Chr02	irgsp1_rep	CDS	4941894	4942008	.	+	2	Parent=Os02t0189150-00
Chr02	irgsp1_rep	mRNA	4942762	4944255	.	+	.	ID=Os02t0189200-01;Name=Os02t0189200-01;Locus_id=Os02g0189200;CGSNL Gene Symbol=GELP31;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 31;Oryzabase Gene Symbol Synonym(s)=OsGELP31;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 31;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK108567 (DDBJ%2C Best hit);ORF_evidence=A2X1U0 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=002-145-C12;Oryzabase=10981;TENOR=Os02t0189200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	4942762	4942774	.	+	.	Parent=Os02t0189200-01
Chr02	irgsp1_rep	CDS	4942775	4943203	.	+	0	Parent=Os02t0189200-01
Chr02	irgsp1_rep	CDS	4943272	4943976	.	+	0	Parent=Os02t0189200-01
Chr02	irgsp1_rep	three_prime_UTR	4943977	4944255	.	+	.	Parent=Os02t0189200-01
Chr02	irgsp1_rep	mRNA	4944688	4948386	.	+	.	ID=Os02t0189300-01;Name=Os02t0189300-01;Locus_id=Os02g0189300;CGSNL Gene Symbol=GELP32;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 32;Oryzabase Gene Symbol Synonym(s)=OsGELP32;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 32;Note=Esterase%2C SGNH hydrolase-type domain containing protein.;Transcript_evidence=AK060691 (DDBJ%2C Best hit);ORF_evidence=XP_002869591.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087),Esterase%2C SGNH hydrolase-type (IPR013830),Esterase%2C SGNH hydrolase-type%2C subgroup (IPR013831);NIAS_FLcDNA=001-030-C02;Oryzabase=10982;Expression=AK060691;TENOR=Os02t0189300-01;KEGG=Os02t0189300-01
Chr02	irgsp1_rep	five_prime_UTR	4944688	4944758	.	+	.	Parent=Os02t0189300-01
Chr02	irgsp1_rep	CDS	4944759	4945154	.	+	0	Parent=Os02t0189300-01
Chr02	irgsp1_rep	CDS	4946761	4947262	.	+	0	Parent=Os02t0189300-01
Chr02	irgsp1_rep	CDS	4948046	4948242	.	+	2	Parent=Os02t0189300-01
Chr02	irgsp1_rep	three_prime_UTR	4948243	4948386	.	+	.	Parent=Os02t0189300-01
Chr02	irgsp1_rep	mRNA	4949654	4952351	.	-	.	ID=Os02t0189400-01;Name=Os02t0189400-01;Locus_id=Os02g0189400;Note=Defence response%2C Rin4 domain containing protein.;Transcript_evidence=AK108100 (DDBJ%2C Best hit);ORF_evidence=B8AJ85 (UniProt);InterPro=Pathogenic type III effector avirulence factor Avr cleavage site (IPR008700);NIAS_FLcDNA=002-139-A12;Expression=AK108100;TENOR=Os02t0189400-01;KEGG=Os02t0189400-01
Chr02	irgsp1_rep	five_prime_UTR	4952036	4952351	.	-	.	Parent=Os02t0189400-01
Chr02	irgsp1_rep	CDS	4952030	4952035	.	-	0	Parent=Os02t0189400-01
Chr02	irgsp1_rep	CDS	4949960	4950797	.	-	0	Parent=Os02t0189400-01
Chr02	irgsp1_rep	CDS	4949778	4949812	.	-	2	Parent=Os02t0189400-01
Chr02	irgsp1_rep	three_prime_UTR	4949654	4949777	.	-	.	Parent=Os02t0189400-01
Chr02	irgsp1_rep	mRNA	4958466	4958880	.	-	.	ID=Os02t0189500-01;Name=Os02t0189500-01;Locus_id=Os02g0189500;Note=Non-protein coding transcript.;Transcript_evidence=AK063240 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-112-G03;TENOR=Os02t0189500-01
Chr02	irgsp1_rep	exon	4958466	4958880	.	-	.	Parent=Os02t0189500-01
Chr02	irgsp1_rep	mRNA	4966920	4967015	.	+	.	ID=Os02t0189566-00;Name=Os02t0189566-00;Locus_id=Os02g0189566;Note=Similar to R2R3MYB-domain protein (Fragment).;Transcript_evidence=AF099436 (DDBJ);ORF_evidence=Q9SQA0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Homeodomain-related (IPR012287),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);TENOR=Os02t0189566-00
Chr02	irgsp1_rep	CDS	4966920	4967015	.	+	0	Parent=Os02t0189566-00
Chr02	irgsp1_rep	mRNA	4967961	4971634	.	+	.	ID=Os02t0189700-01;Name=Os02t0189700-01;Locus_id=Os02g0189700;Note=Similar to Felis catus multi-drug resistance related (Fragment).;Transcript_evidence=AK110945 (DDBJ%2C Best hit);ORF_evidence=longestORF;InterPro=Protein of unknown function DUF1602 (IPR011633);NIAS_FLcDNA=002-173-H05;Expression=AK110945;TENOR=Os02t0189700-01;KEGG=Os02t0189700-01
Chr02	irgsp1_rep	five_prime_UTR	4967961	4968088	.	+	.	Parent=Os02t0189700-01
Chr02	irgsp1_rep	five_prime_UTR	4968120	4968236	.	+	.	Parent=Os02t0189700-01
Chr02	irgsp1_rep	five_prime_UTR	4971173	4971209	.	+	.	Parent=Os02t0189700-01
Chr02	irgsp1_rep	CDS	4971210	4971509	.	+	0	Parent=Os02t0189700-01
Chr02	irgsp1_rep	three_prime_UTR	4971510	4971634	.	+	.	Parent=Os02t0189700-01
Chr02	irgsp1_rep	mRNA	4969144	4971466	.	-	.	ID=Os02t0189800-00;Name=Os02t0189800-00;Locus_id=Os02g0189800;Note=Similar to Felis catus multi-drug resistance related (Fragment).;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001046144.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);TENOR=Os02t0189800-00;KEGG=Os02t0189800-00
Chr02	irgsp1_rep	CDS	4970600	4971466	.	-	0	Parent=Os02t0189800-00
Chr02	irgsp1_rep	CDS	4969144	4970523	.	-	0	Parent=Os02t0189800-00
Chr02	irgsp1_rep	mRNA	4974454	4984053	.	+	.	ID=Os02t0189900-01;Name=Os02t0189900-01;Locus_id=Os02g0189900;Note=Hepatocellular carcinoma-associated antigen 59 family protein.;Transcript_evidence=AK063528 (DDBJ%2C Best hit);ORF_evidence=longestORF;InterPro=Hepatocellular carcinoma-associated antigen 59 (IPR010756);NIAS_FLcDNA=001-117-A09;Expression=AK063528;TENOR=Os02t0189900-01;KEGG=Os02t0189900-01
Chr02	irgsp1_rep	five_prime_UTR	4974454	4974589	.	+	.	Parent=Os02t0189900-01
Chr02	irgsp1_rep	CDS	4974590	4974613	.	+	0	Parent=Os02t0189900-01
Chr02	irgsp1_rep	CDS	4975358	4975428	.	+	0	Parent=Os02t0189900-01
Chr02	irgsp1_rep	CDS	4981807	4981859	.	+	1	Parent=Os02t0189900-01
Chr02	irgsp1_rep	CDS	4982606	4982775	.	+	2	Parent=Os02t0189900-01
Chr02	irgsp1_rep	three_prime_UTR	4982776	4984053	.	+	.	Parent=Os02t0189900-01
Chr02	irgsp1_rep	mRNA	4975314	4975849	.	+	.	ID=Os02t0189900-02;Name=Os02t0189900-02;Locus_id=Os02g0189900;Note=Similar to hepatocellular carcinoma-associated antigen 59 family protein.;Transcript_evidence=AK062652 (DDBJ%2C Best hit);ORF_evidence=B4FSC7 (UniProt);NIAS_FLcDNA=001-105-E08;Expression=AK062652;TENOR=Os02t0189900-02;KEGG=Os02t0189900-02
Chr02	irgsp1_rep	five_prime_UTR	4975314	4975357	.	+	.	Parent=Os02t0189900-02
Chr02	irgsp1_rep	CDS	4975358	4975432	.	+	0	Parent=Os02t0189900-02
Chr02	irgsp1_rep	three_prime_UTR	4975433	4975849	.	+	.	Parent=Os02t0189900-02
Chr02	irgsp1_rep	mRNA	4976661	4984327	.	-	.	ID=Os02t0190000-00;Name=Os02t0190000-00;Locus_id=Os02g0190000;Note=Putative uncharacterized protein.;Transcript_evidence=Q6YUU5 (UniProt);ORF_evidence=B9F3S3 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);TENOR=Os02t0190000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	4984097	4984327	.	-	0	Parent=Os02t0190000-00
Chr02	irgsp1_rep	CDS	4983941	4983995	.	-	0	Parent=Os02t0190000-00
Chr02	irgsp1_rep	CDS	4983212	4983848	.	-	2	Parent=Os02t0190000-00
Chr02	irgsp1_rep	CDS	4982593	4983133	.	-	1	Parent=Os02t0190000-00
Chr02	irgsp1_rep	CDS	4978131	4979018	.	-	0	Parent=Os02t0190000-00
Chr02	irgsp1_rep	CDS	4976661	4978040	.	-	0	Parent=Os02t0190000-00
Chr02	irgsp1_rep	mRNA	4985043	4985863	.	+	.	ID=Os02t0190100-00;Name=Os02t0190100-00;Locus_id=Os02g0190100;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A3A400 (UniProt);TENOR=Os02t0190100-00;KEGG=Os02t0190100-00
Chr02	irgsp1_rep	CDS	4985043	4985189	.	+	0	Parent=Os02t0190100-00
Chr02	irgsp1_rep	CDS	4985546	4985863	.	+	0	Parent=Os02t0190100-00
Chr02	irgsp1_rep	mRNA	4987257	4997986	.	+	.	ID=Os02t0190200-01;Name=Os02t0190200-01;Locus_id=Os02g0190200;Note=Hypothetical protein.;Transcript_evidence=AK064769 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013000A09;Expression=AK064769;TENOR=Os02t0190200-01;KEGG=Os02t0190200-01
Chr02	irgsp1_rep	five_prime_UTR	4987257	4987354	.	+	.	Parent=Os02t0190200-01
Chr02	irgsp1_rep	five_prime_UTR	4987420	4987548	.	+	.	Parent=Os02t0190200-01
Chr02	irgsp1_rep	five_prime_UTR	4987648	4987776	.	+	.	Parent=Os02t0190200-01
Chr02	irgsp1_rep	five_prime_UTR	4987852	4987922	.	+	.	Parent=Os02t0190200-01
Chr02	irgsp1_rep	five_prime_UTR	4988991	4990461	.	+	.	Parent=Os02t0190200-01
Chr02	irgsp1_rep	five_prime_UTR	4990543	4990604	.	+	.	Parent=Os02t0190200-01
Chr02	irgsp1_rep	five_prime_UTR	4992082	4992169	.	+	.	Parent=Os02t0190200-01
Chr02	irgsp1_rep	five_prime_UTR	4993783	4993836	.	+	.	Parent=Os02t0190200-01
Chr02	irgsp1_rep	five_prime_UTR	4994026	4994056	.	+	.	Parent=Os02t0190200-01
Chr02	irgsp1_rep	five_prime_UTR	4995912	4996449	.	+	.	Parent=Os02t0190200-01
Chr02	irgsp1_rep	CDS	4996450	4996458	.	+	0	Parent=Os02t0190200-01
Chr02	irgsp1_rep	CDS	4996537	4997241	.	+	0	Parent=Os02t0190200-01
Chr02	irgsp1_rep	CDS	4997400	4997723	.	+	0	Parent=Os02t0190200-01
Chr02	irgsp1_rep	three_prime_UTR	4997724	4997986	.	+	.	Parent=Os02t0190200-01
Chr02	irgsp1_rep	mRNA	4988483	4997740	.	-	.	ID=Os02t0190300-01;Name=Os02t0190300-01;Locus_id=Os02g0190300;CGSNL Gene Symbol=ABCB9;CGSNL Gene Name=ABC TRANSPORTER B FAMILY MEMBER 9;Oryzabase Gene Symbol Synonym(s)=OsABCB9%2C OsPGP9%2C OsISC33;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCB subgroup member 9%2C P-Glycoprotein 9%2C Iron-sulfur cluster protein 33;Note=P-glycoprotein homologue.;Transcript_evidence=AK287504 (DDBJ%2C Best hit);ORF_evidence=Q6YUU5 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);NIAS_FLcDNA=J043035B21;Oryzabase=11928;TENOR=Os02t0190300-01;KEGG=Os02t0190300-01
Chr02	irgsp1_rep	five_prime_UTR	4997679	4997740	.	-	.	Parent=Os02t0190300-01
Chr02	irgsp1_rep	CDS	4997442	4997678	.	-	0	Parent=Os02t0190300-01
Chr02	irgsp1_rep	CDS	4997269	4997323	.	-	0	Parent=Os02t0190300-01
Chr02	irgsp1_rep	CDS	4996535	4997171	.	-	2	Parent=Os02t0190300-01
Chr02	irgsp1_rep	CDS	4995899	4996439	.	-	1	Parent=Os02t0190300-01
Chr02	irgsp1_rep	CDS	4990526	4991413	.	-	0	Parent=Os02t0190300-01
Chr02	irgsp1_rep	CDS	4989056	4990435	.	-	0	Parent=Os02t0190300-01
Chr02	irgsp1_rep	three_prime_UTR	4988483	4989055	.	-	.	Parent=Os02t0190300-01
Chr02	irgsp1_rep	mRNA	5019765	5028028	.	+	.	ID=Os02t0190500-01;Name=Os02t0190500-01;Locus_id=Os02g0190500;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK111710 (DDBJ%2C Best hit);ORF_evidence=XP_002869840.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023020E04;Expression=AK111710;TENOR=Os02t0190500-01;KEGG=Os02t0190500-01
Chr02	irgsp1_rep	five_prime_UTR	5019765	5020120	.	+	.	Parent=Os02t0190500-01
Chr02	irgsp1_rep	CDS	5020121	5020205	.	+	0	Parent=Os02t0190500-01
Chr02	irgsp1_rep	CDS	5020304	5020439	.	+	2	Parent=Os02t0190500-01
Chr02	irgsp1_rep	CDS	5020930	5021001	.	+	1	Parent=Os02t0190500-01
Chr02	irgsp1_rep	CDS	5021078	5021143	.	+	1	Parent=Os02t0190500-01
Chr02	irgsp1_rep	CDS	5021222	5021293	.	+	1	Parent=Os02t0190500-01
Chr02	irgsp1_rep	CDS	5021365	5021436	.	+	1	Parent=Os02t0190500-01
Chr02	irgsp1_rep	CDS	5024497	5024568	.	+	1	Parent=Os02t0190500-01
Chr02	irgsp1_rep	CDS	5024658	5024723	.	+	1	Parent=Os02t0190500-01
Chr02	irgsp1_rep	CDS	5024801	5024866	.	+	1	Parent=Os02t0190500-01
Chr02	irgsp1_rep	CDS	5024948	5025276	.	+	1	Parent=Os02t0190500-01
Chr02	irgsp1_rep	CDS	5025716	5025972	.	+	2	Parent=Os02t0190500-01
Chr02	irgsp1_rep	CDS	5026216	5026487	.	+	0	Parent=Os02t0190500-01
Chr02	irgsp1_rep	CDS	5026583	5026718	.	+	1	Parent=Os02t0190500-01
Chr02	irgsp1_rep	CDS	5026836	5026975	.	+	0	Parent=Os02t0190500-01
Chr02	irgsp1_rep	CDS	5027054	5027210	.	+	1	Parent=Os02t0190500-01
Chr02	irgsp1_rep	CDS	5027479	5027637	.	+	0	Parent=Os02t0190500-01
Chr02	irgsp1_rep	three_prime_UTR	5027638	5028028	.	+	.	Parent=Os02t0190500-01
Chr02	irgsp1_rep	mRNA	5028576	5030493	.	-	.	ID=Os02t0190600-00;Name=Os02t0190600-00;Locus_id=Os02g0190600;Oryzabase Gene Symbol Synonym(s)=OsLCYb%2C OsLCYbeta%2C OsLYCb%2C OsLCY;Oryzabase Gene Name Synonym(s)=lycopene e-cyclase%2C lycopene beta-cyclase;Note=Lycopene beta and epsilon cyclase domain containing protein.;Transcript_evidence=AK373933 (DDBJ);ORF_evidence=Q84VG9 (UniProt);GO=Biological Process: carotenoid biosynthetic process (GO:0016117),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705);InterPro=Lycopene cyclase-type%2C FAD-binding (IPR008671),Lycopene cyclase%2C beta/epsilon (IPR010108);Oryzabase=11533;TENOR=Os02t0190600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	5030383	5030493	.	-	.	Parent=Os02t0190600-00
Chr02	irgsp1_rep	CDS	5028913	5030382	.	-	0	Parent=Os02t0190600-00
Chr02	irgsp1_rep	three_prime_UTR	5028576	5028912	.	-	.	Parent=Os02t0190600-00
Chr02	irgsp1_rep	mRNA	5033627	5034206	.	-	.	ID=Os02t0190700-00;Name=Os02t0190700-00;Locus_id=Os02g0190700;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001046152.2 (RefSeq);TENOR=Os02t0190700-00;KEGG=Os02t0190700-00
Chr02	irgsp1_rep	CDS	5034119	5034206	.	-	0	Parent=Os02t0190700-00
Chr02	irgsp1_rep	CDS	5033961	5034016	.	-	2	Parent=Os02t0190700-00
Chr02	irgsp1_rep	CDS	5033627	5033851	.	-	0	Parent=Os02t0190700-00
Chr02	irgsp1_rep	mRNA	5039000	5043307	.	-	.	ID=Os02t0190800-01;Name=Os02t0190800-01;Locus_id=Os02g0190800;Note=Alpha/beta hydrolase fold-1 domain containing protein.;Transcript_evidence=AK099853 (DDBJ%2C Best hit);ORF_evidence=NP_001151903.1 (RefSeq);NIAS_FLcDNA=J013110H01;Expression=AK099853;TENOR=Os02t0190800-01;KEGG=Os02t0190800-01
Chr02	irgsp1_rep	five_prime_UTR	5043157	5043307	.	-	.	Parent=Os02t0190800-01
Chr02	irgsp1_rep	CDS	5042804	5043156	.	-	0	Parent=Os02t0190800-01
Chr02	irgsp1_rep	CDS	5040865	5040901	.	-	1	Parent=Os02t0190800-01
Chr02	irgsp1_rep	CDS	5040543	5040779	.	-	0	Parent=Os02t0190800-01
Chr02	irgsp1_rep	CDS	5040418	5040465	.	-	0	Parent=Os02t0190800-01
Chr02	irgsp1_rep	CDS	5039372	5039796	.	-	0	Parent=Os02t0190800-01
Chr02	irgsp1_rep	CDS	5039174	5039243	.	-	1	Parent=Os02t0190800-01
Chr02	irgsp1_rep	three_prime_UTR	5039000	5039173	.	-	.	Parent=Os02t0190800-01
Chr02	irgsp1_rep	mRNA	5045448	5047101	.	-	.	ID=Os02t0190900-01;Name=Os02t0190900-01;Locus_id=Os02g0190900;Note=Phytoene dehydrogenase-like protein.;Transcript_evidence=AK111037 (DDBJ%2C Best hit);ORF_evidence=NP_001148358.1 (RefSeq);InterPro=Biogenesis of lysosome-related organelles complex-1%2C subunit 2 (IPR019269);NIAS_FLcDNA=002-175-A09;Expression=AK111037;TENOR=Os02t0190900-01;KEGG=Os02t0190900-01
Chr02	irgsp1_rep	five_prime_UTR	5046999	5047101	.	-	.	Parent=Os02t0190900-01
Chr02	irgsp1_rep	CDS	5046903	5046998	.	-	0	Parent=Os02t0190900-01
Chr02	irgsp1_rep	CDS	5045568	5045837	.	-	0	Parent=Os02t0190900-01
Chr02	irgsp1_rep	three_prime_UTR	5045448	5045567	.	-	.	Parent=Os02t0190900-01
Chr02	irgsp1_rep	mRNA	5047302	5048437	.	+	.	ID=Os02t0190950-01;Name=Os02t0190950-01;Locus_id=Os02g0190950;Note=Conserved hypothetical protein.;Transcript_evidence=AK242267 (DDBJ%2C Best hit);ORF_evidence=NP_001172838.1 (RefSeq);NIAS_FLcDNA=J075186B15;TENOR=Os02t0190950-01;KEGG=Os02t0190950-01
Chr02	irgsp1_rep	five_prime_UTR	5047302	5047303	.	+	.	Parent=Os02t0190950-01
Chr02	irgsp1_rep	CDS	5047304	5047453	.	+	0	Parent=Os02t0190950-01
Chr02	irgsp1_rep	three_prime_UTR	5047454	5048437	.	+	.	Parent=Os02t0190950-01
Chr02	irgsp1_rep	mRNA	5048656	5051397	.	-	.	ID=Os02t0191000-01;Name=Os02t0191000-01;Locus_id=Os02g0191000;RAP-DB Gene Symbol Synonym(s)=NBS-Str1;Note=NBS (nucleotide binding site)-LRR (leucine rich repeat) disease resistance protein%2C Desiccation stress response;Transcript_evidence=AY217116 (bread wheat);ORF_evidence=Q6YUT7;GO=Molecular Function: protein binding (GO:0005515),Molecular Function: ADP binding (GO:0043531);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),Leucine-rich repeat domain superfamily (IPR032675),Virus X resistance protein-like%2C coiled-coil domain (IPR038005),Rx%2C N-terminal (IPR041118),NB-ARC (IPR002182),Leucine-rich repeat (IPR001611);Manual Curation=September 3%2C 2020;Literature_PMID=21725856;TENOR=Os02t0191000-00;KEGG=Os02t0191000-00
Chr02	irgsp1_rep	CDS	5048656	5051397	.	-	0	Parent=Os02t0191000-01
Chr02	irgsp1_rep	mRNA	5054297	5056546	.	+	.	ID=Os02t0191200-00;Name=Os02t0191200-00;Locus_id=Os02g0191200;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK374766 (DDBJ);ORF_evidence=NP_001046155.2 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os02t0191200-00
Chr02	irgsp1_rep	five_prime_UTR	5054297	5054308	.	+	.	Parent=Os02t0191200-00
Chr02	irgsp1_rep	CDS	5054309	5056543	.	+	0	Parent=Os02t0191200-00
Chr02	irgsp1_rep	three_prime_UTR	5056544	5056546	.	+	.	Parent=Os02t0191200-00
Chr02	irgsp1_rep	mRNA	5054311	5056544	.	-	.	ID=Os02t0191250-00;Name=Os02t0191250-00;Locus_id=Os02g0191250;Note=Hypothetical protein.;Transcript_evidence=tplb0021n11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0191250-00
Chr02	irgsp1_rep	five_prime_UTR	5055603	5056544	.	-	.	Parent=Os02t0191250-00
Chr02	irgsp1_rep	five_prime_UTR	5054872	5055205	.	-	.	Parent=Os02t0191250-00
Chr02	irgsp1_rep	CDS	5054721	5054871	.	-	0	Parent=Os02t0191250-00
Chr02	irgsp1_rep	CDS	5054311	5054628	.	-	2	Parent=Os02t0191250-00
Chr02	irgsp1_rep	mRNA	5058825	5061929	.	-	.	ID=Os02t0191300-01;Name=Os02t0191300-01;Locus_id=Os02g0191300;Oryzabase Gene Symbol Synonym(s)=OsATL6;Oryzabase Gene Name Synonym(s)=amino acid transporter-like 6;Note=Similar to Amino acid transporter-like protein.;Transcript_evidence=AK069748 (DDBJ%2C Best hit);ORF_evidence=B6TE03 (UniProt);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=J023027D15;Oryzabase=18523;Expression=AK069748;TENOR=Os02t0191300-01;KEGG=Os02t0191300-01
Chr02	irgsp1_rep	five_prime_UTR	5061852	5061929	.	-	.	Parent=Os02t0191300-01
Chr02	irgsp1_rep	five_prime_UTR	5061273	5061286	.	-	.	Parent=Os02t0191300-01
Chr02	irgsp1_rep	CDS	5060852	5061272	.	-	0	Parent=Os02t0191300-01
Chr02	irgsp1_rep	CDS	5060166	5060318	.	-	2	Parent=Os02t0191300-01
Chr02	irgsp1_rep	CDS	5059872	5060075	.	-	2	Parent=Os02t0191300-01
Chr02	irgsp1_rep	CDS	5059321	5059786	.	-	2	Parent=Os02t0191300-01
Chr02	irgsp1_rep	CDS	5059085	5059220	.	-	1	Parent=Os02t0191300-01
Chr02	irgsp1_rep	three_prime_UTR	5058825	5059084	.	-	.	Parent=Os02t0191300-01
Chr02	irgsp1_rep	mRNA	5063137	5066609	.	+	.	ID=Os02t0191500-01;Name=Os02t0191500-01;Locus_id=Os02g0191500;Note=Similar to Goliath homolog precursor (RING finger protein 130).;Transcript_evidence=AK064615 (DDBJ%2C Best hit);ORF_evidence=A2X1W4 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=002-113-C04;Expression=AK064615;TENOR=Os02t0191500-01;KEGG=Os02t0191500-01
Chr02	irgsp1_rep	five_prime_UTR	5063137	5064129	.	+	.	Parent=Os02t0191500-01
Chr02	irgsp1_rep	CDS	5064130	5065173	.	+	0	Parent=Os02t0191500-01
Chr02	irgsp1_rep	CDS	5066237	5066320	.	+	0	Parent=Os02t0191500-01
Chr02	irgsp1_rep	three_prime_UTR	5066321	5066609	.	+	.	Parent=Os02t0191500-01
Chr02	irgsp1_rep	mRNA	5067166	5068036	.	-	.	ID=Os02t0191600-00;Name=Os02t0191600-00;Locus_id=Os02g0191600;CGSNL Gene Symbol=BZIP16;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 16;Oryzabase Gene Symbol Synonym(s)=OsbZIP16%2C OsSTA51;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 16%2C Basic leucine zipper transcription factor OsbZIP16;Note=Basic-leucine zipper (bZIP) transcription factor domain containing protein.;Transcript_evidence=CT835362 (DDBJ%2C Best hit);ORF_evidence=NP_001046158.2 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),Basic leucine zipper (IPR011700);Oryzabase=10105;TENOR=Os02t0191600-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	5068035	5068036	.	-	.	Parent=Os02t0191600-00
Chr02	irgsp1_rep	CDS	5067435	5068034	.	-	0	Parent=Os02t0191600-00
Chr02	irgsp1_rep	three_prime_UTR	5067166	5067434	.	-	.	Parent=Os02t0191600-00
Chr02	irgsp1_rep	mRNA	5071403	5075543	.	+	.	ID=Os02t0191650-01;Name=Os02t0191650-01;Locus_id=Os02g0191650;Note=Hypothetical gene.;Transcript_evidence=AK287834 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065188K11;TENOR=Os02t0191650-01
Chr02	irgsp1_rep	five_prime_UTR	5071403	5072137	.	+	.	Parent=Os02t0191650-01
Chr02	irgsp1_rep	five_prime_UTR	5072243	5072368	.	+	.	Parent=Os02t0191650-01
Chr02	irgsp1_rep	five_prime_UTR	5072455	5072611	.	+	.	Parent=Os02t0191650-01
Chr02	irgsp1_rep	five_prime_UTR	5073118	5073227	.	+	.	Parent=Os02t0191650-01
Chr02	irgsp1_rep	five_prime_UTR	5073312	5073459	.	+	.	Parent=Os02t0191650-01
Chr02	irgsp1_rep	five_prime_UTR	5073584	5073725	.	+	.	Parent=Os02t0191650-01
Chr02	irgsp1_rep	five_prime_UTR	5073817	5073907	.	+	.	Parent=Os02t0191650-01
Chr02	irgsp1_rep	five_prime_UTR	5074147	5074252	.	+	.	Parent=Os02t0191650-01
Chr02	irgsp1_rep	five_prime_UTR	5074340	5074439	.	+	.	Parent=Os02t0191650-01
Chr02	irgsp1_rep	five_prime_UTR	5074778	5074883	.	+	.	Parent=Os02t0191650-01
Chr02	irgsp1_rep	five_prime_UTR	5075016	5075022	.	+	.	Parent=Os02t0191650-01
Chr02	irgsp1_rep	CDS	5075023	5075543	.	+	0	Parent=Os02t0191650-01
Chr02	irgsp1_rep	mRNA	5071413	5075530	.	-	.	ID=Os02t0191700-00;Name=Os02t0191700-00;Locus_id=Os02g0191700;Note=EF-HAND 2 domain containing protein.;Transcript_evidence=AK330611 (DDBJ);ORF_evidence=XP_002872330.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249);TENOR=Os02t0191700-00;KEGG=Os02t0191700-00
Chr02	irgsp1_rep	five_prime_UTR	5075448	5075530	.	-	.	Parent=Os02t0191700-00
Chr02	irgsp1_rep	CDS	5075016	5075447	.	-	0	Parent=Os02t0191700-00
Chr02	irgsp1_rep	CDS	5074778	5074883	.	-	0	Parent=Os02t0191700-00
Chr02	irgsp1_rep	CDS	5074340	5074439	.	-	2	Parent=Os02t0191700-00
Chr02	irgsp1_rep	CDS	5074147	5074252	.	-	1	Parent=Os02t0191700-00
Chr02	irgsp1_rep	CDS	5073817	5073907	.	-	0	Parent=Os02t0191700-00
Chr02	irgsp1_rep	CDS	5073584	5073725	.	-	2	Parent=Os02t0191700-00
Chr02	irgsp1_rep	CDS	5073312	5073459	.	-	1	Parent=Os02t0191700-00
Chr02	irgsp1_rep	CDS	5073118	5073227	.	-	0	Parent=Os02t0191700-00
Chr02	irgsp1_rep	CDS	5072455	5072611	.	-	1	Parent=Os02t0191700-00
Chr02	irgsp1_rep	CDS	5072243	5072368	.	-	0	Parent=Os02t0191700-00
Chr02	irgsp1_rep	CDS	5071997	5072137	.	-	0	Parent=Os02t0191700-00
Chr02	irgsp1_rep	three_prime_UTR	5071413	5071996	.	-	.	Parent=Os02t0191700-00
Chr02	irgsp1_rep	mRNA	5079077	5079712	.	-	.	ID=Os02t0191800-01;Name=Os02t0191800-01;Locus_id=Os02g0191800;Note=Conserved hypothetical protein.;Transcript_evidence=AK063218 (DDBJ%2C Best hit);ORF_evidence=Q69M00 (UniProt);NIAS_FLcDNA=001-112-E02;Expression=AK063218;TENOR=Os02t0191800-01;KEGG=Os02t0191800-01
Chr02	irgsp1_rep	five_prime_UTR	5079629	5079712	.	-	.	Parent=Os02t0191800-01
Chr02	irgsp1_rep	CDS	5079182	5079628	.	-	0	Parent=Os02t0191800-01
Chr02	irgsp1_rep	three_prime_UTR	5079077	5079181	.	-	.	Parent=Os02t0191800-01
Chr02	irgsp1_rep	mRNA	5112362	5112690	.	-	.	ID=Os02t0192001-00;Name=Os02t0192001-00;Locus_id=Os02g0192001;Note=Conserved hypothetical protein.;Transcript_evidence=AK362497 (DDBJ);ORF_evidence=B8AJ99 (UniProt);TENOR=Os02t0192001-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	5112626	5112690	.	-	.	Parent=Os02t0192001-00
Chr02	irgsp1_rep	CDS	5112362	5112625	.	-	0	Parent=Os02t0192001-00
Chr02	irgsp1_rep	mRNA	5118284	5121512	.	-	.	ID=Os02t0192100-01;Name=Os02t0192100-01;Locus_id=Os02g0192100;Note=Conserved hypothetical protein.;Transcript_evidence=AK100401 (DDBJ%2C Best hit);ORF_evidence=B9F3T2 (UniProt);NIAS_FLcDNA=J023086N19;TENOR=Os02t0192100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	5121358	5121512	.	-	.	Parent=Os02t0192100-01
Chr02	irgsp1_rep	CDS	5120798	5121357	.	-	0	Parent=Os02t0192100-01
Chr02	irgsp1_rep	CDS	5120501	5120693	.	-	1	Parent=Os02t0192100-01
Chr02	irgsp1_rep	three_prime_UTR	5120362	5120500	.	-	.	Parent=Os02t0192100-01
Chr02	irgsp1_rep	three_prime_UTR	5118284	5119415	.	-	.	Parent=Os02t0192100-01
Chr02	irgsp1_rep	mRNA	5118682	5121303	.	+	.	ID=Os02t0192150-00;Name=Os02t0192150-00;Locus_id=Os02g0192150;Note=Hypothetical protein.;Transcript_evidence=tplb0049a14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0192150-00
Chr02	irgsp1_rep	five_prime_UTR	5118682	5118895	.	+	.	Parent=Os02t0192150-00
Chr02	irgsp1_rep	CDS	5118896	5119210	.	+	0	Parent=Os02t0192150-00
Chr02	irgsp1_rep	three_prime_UTR	5119211	5119405	.	+	.	Parent=Os02t0192150-00
Chr02	irgsp1_rep	three_prime_UTR	5120354	5120448	.	+	.	Parent=Os02t0192150-00
Chr02	irgsp1_rep	three_prime_UTR	5120538	5120677	.	+	.	Parent=Os02t0192150-00
Chr02	irgsp1_rep	three_prime_UTR	5120778	5121303	.	+	.	Parent=Os02t0192150-00
Chr02	irgsp1_rep	mRNA	5121681	5125735	.	+	.	ID=Os02t0192200-01;Name=Os02t0192200-01;Locus_id=Os02g0192200;Note=Octicosapeptide/Phox/Bem1p domain containing protein.;Transcript_evidence=AK101757 (DDBJ%2C Best hit),AK101037 (DDBJ%2C Best hit);ORF_evidence=D0VLU5 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Phox/Bem1p (IPR000270),Zinc finger%2C CCHC-type (IPR001878),Transposase%2C MuDR%2C plant (IPR004332),Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);NIAS_FLcDNA=J033063L15,J033000H11;Expression=AK101757;TENOR=Os02t0192200-01;KEGG=Os02t0192200-01
Chr02	irgsp1_rep	five_prime_UTR	5121681	5121950	.	+	.	Parent=Os02t0192200-01
Chr02	irgsp1_rep	five_prime_UTR	5123175	5123187	.	+	.	Parent=Os02t0192200-01
Chr02	irgsp1_rep	CDS	5123188	5123507	.	+	0	Parent=Os02t0192200-01
Chr02	irgsp1_rep	CDS	5123578	5125420	.	+	1	Parent=Os02t0192200-01
Chr02	irgsp1_rep	three_prime_UTR	5125421	5125735	.	+	.	Parent=Os02t0192200-01
Chr02	irgsp1_rep	mRNA	5123182	5125550	.	-	.	ID=Os02t0192250-00;Name=Os02t0192250-00;Locus_id=Os02g0192250;Note=Non-protein coding transcript.;Transcript_evidence=tplb0028a21 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os02t0192250-00
Chr02	irgsp1_rep	exon	5123587	5125550	.	-	.	Parent=Os02t0192250-00
Chr02	irgsp1_rep	exon	5123182	5123512	.	-	.	Parent=Os02t0192250-00
Chr02	irgsp1_rep	mRNA	5131380	5132629	.	+	.	ID=Os02t0192300-01;Name=Os02t0192300-01;Locus_id=Os02g0192300;CGSNL Gene Symbol=DLN47;CGSNL Gene Name=DLN REPRESSOR 47;Oryzabase Gene Symbol Synonym(s)=OsDLN47;Oryzabase Gene Name Synonym(s)=DLN repressor 47%2C DLN motif protein 47;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK288035 (DDBJ%2C Best hit);ORF_evidence=NP_001147036.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-type%2C conserved site (IPR019786),Zinc finger%2C PHD-finger (IPR019787);NIAS_FLcDNA=J075141L01;Oryzabase=23166;TENOR=Os02t0192300-01;KEGG=Os02t0192300-01
Chr02	irgsp1_rep	five_prime_UTR	5131380	5131557	.	+	.	Parent=Os02t0192300-01
Chr02	irgsp1_rep	CDS	5131558	5132337	.	+	0	Parent=Os02t0192300-01
Chr02	irgsp1_rep	three_prime_UTR	5132338	5132629	.	+	.	Parent=Os02t0192300-01
Chr02	irgsp1_rep	mRNA	5146169	5151128	.	+	.	ID=Os02t0192400-01;Name=Os02t0192400-01;Locus_id=Os02g0192400;CGSNL Gene Symbol=DLN48;CGSNL Gene Name=DLN REPRESSOR 48;Oryzabase Gene Symbol Synonym(s)=OsDLN48;Oryzabase Gene Name Synonym(s)=DLN repressor 48%2C DLN motif protein 48;Note=Zinc finger%2C PHD-type domain containing protein.;Transcript_evidence=AK072184 (DDBJ%2C Best hit);ORF_evidence=B9F3T3 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-type%2C conserved site (IPR019786),Zinc finger%2C PHD-finger (IPR019787);NIAS_FLcDNA=J013136H24;Oryzabase=23167;TENOR=Os02t0192400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	5146169	5146170	.	+	.	Parent=Os02t0192400-01
Chr02	irgsp1_rep	CDS	5146171	5146266	.	+	0	Parent=Os02t0192400-01
Chr02	irgsp1_rep	CDS	5146679	5147107	.	+	0	Parent=Os02t0192400-01
Chr02	irgsp1_rep	CDS	5147669	5149726	.	+	0	Parent=Os02t0192400-01
Chr02	irgsp1_rep	CDS	5150171	5150425	.	+	0	Parent=Os02t0192400-01
Chr02	irgsp1_rep	three_prime_UTR	5150426	5151128	.	+	.	Parent=Os02t0192400-01
Chr02	irgsp1_rep	mRNA	5148571	5150711	.	+	.	ID=Os02t0192400-02;Name=Os02t0192400-02;Locus_id=Os02g0192400;CGSNL Gene Symbol=DLN48;CGSNL Gene Name=DLN REPRESSOR 48;Oryzabase Gene Symbol Synonym(s)=OsDLN48;Oryzabase Gene Name Synonym(s)=DLN repressor 48%2C DLN motif protein 48;Note=Hypothetical conserved gene.;Transcript_evidence=AK110819 (DDBJ%2C Best hit);ORF_evidence=B9F3T3 (UniProt);NIAS_FLcDNA=002-171-G07;Oryzabase=23167;Expression=AK110819;TENOR=Os02t0192400-02;KEGG=Os02t0192400-02
Chr02	irgsp1_rep	five_prime_UTR	5148571	5148571	.	+	.	Parent=Os02t0192400-02
Chr02	irgsp1_rep	CDS	5148572	5149726	.	+	0	Parent=Os02t0192400-02
Chr02	irgsp1_rep	CDS	5150171	5150425	.	+	0	Parent=Os02t0192400-02
Chr02	irgsp1_rep	three_prime_UTR	5150426	5150711	.	+	.	Parent=Os02t0192400-02
Chr02	irgsp1_rep	mRNA	5151786	5158885	.	-	.	ID=Os02t0192500-01;Name=Os02t0192500-01;Locus_id=Os02g0192500;CGSNL Gene Symbol=CSLA1;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE A1;Oryzabase Gene Symbol Synonym(s)=OsCslA1%2C OsCSLA1;Note=Similar to Cellulose synthase-like protein (Fragment).;Transcript_evidence=AK102694 (DDBJ%2C Best hit);ORF_evidence=Q7PC76 (UniProt);InterPro=Glycosyl transferase%2C family 2 (IPR001173);NIAS_FLcDNA=J033103E20;Oryzabase=9065;Expression=AK102694;TENOR=Os02t0192500-01;KEGG=Os02t0192500-01
Chr02	irgsp1_rep	five_prime_UTR	5158743	5158885	.	-	.	Parent=Os02t0192500-01
Chr02	irgsp1_rep	CDS	5158452	5158742	.	-	0	Parent=Os02t0192500-01
Chr02	irgsp1_rep	CDS	5157957	5158055	.	-	0	Parent=Os02t0192500-01
Chr02	irgsp1_rep	CDS	5156095	5156347	.	-	0	Parent=Os02t0192500-01
Chr02	irgsp1_rep	CDS	5153691	5153801	.	-	2	Parent=Os02t0192500-01
Chr02	irgsp1_rep	CDS	5153417	5153553	.	-	2	Parent=Os02t0192500-01
Chr02	irgsp1_rep	CDS	5153113	5153226	.	-	0	Parent=Os02t0192500-01
Chr02	irgsp1_rep	CDS	5152818	5153017	.	-	0	Parent=Os02t0192500-01
Chr02	irgsp1_rep	CDS	5152493	5152690	.	-	1	Parent=Os02t0192500-01
Chr02	irgsp1_rep	CDS	5152227	5152389	.	-	1	Parent=Os02t0192500-01
Chr02	irgsp1_rep	three_prime_UTR	5151786	5152226	.	-	.	Parent=Os02t0192500-01
Chr02	irgsp1_rep	mRNA	5151822	5156316	.	-	.	ID=Os02t0192500-02;Name=Os02t0192500-02;Locus_id=Os02g0192500;CGSNL Gene Symbol=CSLA1;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE A1;Oryzabase Gene Symbol Synonym(s)=OsCslA1%2C OsCSLA1;Note=Similar to cDNA clone:J033103E20%2C full insert sequence.;Transcript_evidence=AK059580 (DDBJ%2C Best hit);ORF_evidence=B7ETH8 (UniProt);InterPro=Glycosyl transferase%2C family 2 (IPR001173);NIAS_FLcDNA=001-030-B02;Oryzabase=9065;Expression=AK059580;TENOR=Os02t0192500-02;KEGG=Os02t0192500-02
Chr02	irgsp1_rep	five_prime_UTR	5156315	5156316	.	-	.	Parent=Os02t0192500-02
Chr02	irgsp1_rep	CDS	5156095	5156314	.	-	0	Parent=Os02t0192500-02
Chr02	irgsp1_rep	CDS	5153691	5153801	.	-	2	Parent=Os02t0192500-02
Chr02	irgsp1_rep	CDS	5153417	5153553	.	-	2	Parent=Os02t0192500-02
Chr02	irgsp1_rep	CDS	5153113	5153226	.	-	0	Parent=Os02t0192500-02
Chr02	irgsp1_rep	CDS	5152818	5153017	.	-	0	Parent=Os02t0192500-02
Chr02	irgsp1_rep	CDS	5152493	5152690	.	-	1	Parent=Os02t0192500-02
Chr02	irgsp1_rep	CDS	5152227	5152389	.	-	1	Parent=Os02t0192500-02
Chr02	irgsp1_rep	three_prime_UTR	5151822	5152226	.	-	.	Parent=Os02t0192500-02
Chr02	irgsp1_rep	mRNA	5158450	5158772	.	+	.	ID=Os02t0192600-00;Name=Os02t0192600-00;Locus_id=Os02g0192600;Note=Hypothetical protein.;Transcript_evidence=EU949074 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0192600-00
Chr02	irgsp1_rep	five_prime_UTR	5158450	5158451	.	+	.	Parent=Os02t0192600-00
Chr02	irgsp1_rep	CDS	5158452	5158772	.	+	0	Parent=Os02t0192600-00
Chr02	irgsp1_rep	mRNA	5166998	5167991	.	-	.	ID=Os02t0192700-02;Name=Os02t0192700-02;Locus_id=Os02g0192700;CGSNL Gene Symbol=PRXIIE2;CGSNL Gene Name=PEROXIREDOXIN IIE2;Oryzabase Gene Symbol Synonym(s)=Pre IIE2%2C OsPrxII E2%2C PrxII E2%2C OsPrxIIE2%2C PrxIIE2;Oryzabase Gene Name Synonym(s)=peroxiredoxin IIE2%2C Type-II Prx E2%2C Type-II peroxiredoxin E2;Note=Similar to Thioredoxin peroxidase.;Transcript_evidence=AK061629 (DDBJ%2C Best hit),AK065909 (DDBJ%2C Best hit);ORF_evidence=Q7F8S5 (UniProt);NIAS_FLcDNA=001-035-H06,J013043E11;Oryzabase=19855;Expression=AK061629;TENOR=Os02t0192700-02;KEGG=Os02t0192700-02 (EC:1.11.1.15)
Chr02	irgsp1_rep	five_prime_UTR	5167941	5167991	.	-	.	Parent=Os02t0192700-02
Chr02	irgsp1_rep	CDS	5167263	5167940	.	-	0	Parent=Os02t0192700-02
Chr02	irgsp1_rep	three_prime_UTR	5166998	5167262	.	-	.	Parent=Os02t0192700-02
Chr02	irgsp1_rep	mRNA	5179724	5182004	.	+	.	ID=Os02t0193000-01;Name=Os02t0193000-01;Locus_id=Os02g0193000;Oryzabase Gene Symbol Synonym(s)=OsLysM-RLK1%2C OsLYK4%2C OsNFR5/OsRLK2%2C OsNFR5%2C NFR5%2C OsRLK2%2C RLK2;Oryzabase Gene Name Synonym(s)=LysM receptor-like kinase 1%2C LysM-type receptor-like kinase4%2C NFR5/NFP ortholog;Note=Protein kinase-like domain containing protein.;Transcript_evidence=AK108910 (DDBJ%2C Best hit);ORF_evidence=NP_001147941.1 (RefSeq);NIAS_FLcDNA=002-152-G07;Oryzabase=10920;Expression=AK108910;TENOR=Os02t0193000-01;KEGG=Os02t0193000-01
Chr02	irgsp1_rep	five_prime_UTR	5179724	5179725	.	+	.	Parent=Os02t0193000-01
Chr02	irgsp1_rep	CDS	5179726	5180418	.	+	0	Parent=Os02t0193000-01
Chr02	irgsp1_rep	CDS	5181653	5181850	.	+	0	Parent=Os02t0193000-01
Chr02	irgsp1_rep	three_prime_UTR	5181851	5182004	.	+	.	Parent=Os02t0193000-01
Chr02	irgsp1_rep	mRNA	5183536	5184380	.	-	.	ID=Os02t0193100-01;Name=Os02t0193100-01;Locus_id=Os02g0193100;Note=Conserved hypothetical protein.;Transcript_evidence=AK109089 (DDBJ%2C Best hit);ORF_evidence=A2X1X6 (UniProt);NIAS_FLcDNA=002-155-A01;Expression=AK109089;TENOR=Os02t0193100-01;KEGG=Os02t0193100-01
Chr02	irgsp1_rep	five_prime_UTR	5184306	5184380	.	-	.	Parent=Os02t0193100-01
Chr02	irgsp1_rep	CDS	5183676	5184305	.	-	0	Parent=Os02t0193100-01
Chr02	irgsp1_rep	three_prime_UTR	5183536	5183675	.	-	.	Parent=Os02t0193100-01
Chr02	irgsp1_rep	mRNA	5188886	5189802	.	-	.	ID=Os02t0193200-01;Name=Os02t0193200-01;Locus_id=Os02g0193200;Note=Similar to TMV response-related protein.;Transcript_evidence=AK243219 (DDBJ%2C Best hit);ORF_evidence=NP_001151363.1 (RefSeq);NIAS_FLcDNA=J100043J15;TENOR=Os02t0193200-01;KEGG=Os02t0193200-01
Chr02	irgsp1_rep	five_prime_UTR	5189751	5189802	.	-	.	Parent=Os02t0193200-01
Chr02	irgsp1_rep	CDS	5189148	5189750	.	-	0	Parent=Os02t0193200-01
Chr02	irgsp1_rep	three_prime_UTR	5188886	5189147	.	-	.	Parent=Os02t0193200-01
Chr02	irgsp1_rep	mRNA	5194540	5195290	.	-	.	ID=Os02t0193300-01;Name=Os02t0193300-01;Locus_id=Os02g0193300;Note=Conserved hypothetical protein.;Transcript_evidence=AK108239 (DDBJ%2C Best hit);ORF_evidence=A2X1Y1 (UniProt);NIAS_FLcDNA=002-140-G11;Expression=AK108239;TENOR=Os02t0193300-01;KEGG=Os02t0193300-01
Chr02	irgsp1_rep	five_prime_UTR	5195231	5195290	.	-	.	Parent=Os02t0193300-01
Chr02	irgsp1_rep	CDS	5194652	5195230	.	-	0	Parent=Os02t0193300-01
Chr02	irgsp1_rep	three_prime_UTR	5194540	5194651	.	-	.	Parent=Os02t0193300-01
Chr02	irgsp1_rep	mRNA	5197694	5200762	.	+	.	ID=Os02t0193350-01;Name=Os02t0193350-01;Locus_id=Os02g0193350;Note=Hypothetical conserved gene.;Transcript_evidence=AK288270 (DDBJ%2C Best hit);ORF_evidence=B9F3T5 (UniProt);NIAS_FLcDNA=J090017A17;TENOR=Os02t0193350-01;KEGG=Os02t0193350-01
Chr02	irgsp1_rep	five_prime_UTR	5197694	5198793	.	+	.	Parent=Os02t0193350-01
Chr02	irgsp1_rep	CDS	5198794	5198973	.	+	0	Parent=Os02t0193350-01
Chr02	irgsp1_rep	three_prime_UTR	5198974	5200762	.	+	.	Parent=Os02t0193350-01
Chr02	irgsp1_rep	mRNA	5202115	5204613	.	+	.	ID=Os02t0193425-00;Name=Os02t0193425-00;Locus_id=Os02g0193425;Note=Non-protein coding transcript.;Transcript_evidence=tplb0006k21 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os02t0193425-00
Chr02	irgsp1_rep	exon	5202115	5202284	.	+	.	Parent=Os02t0193425-00
Chr02	irgsp1_rep	exon	5204074	5204613	.	+	.	Parent=Os02t0193425-00
Chr02	irgsp1_rep	mRNA	5207171	5208683	.	+	.	ID=Os02t0193500-01;Name=Os02t0193500-01;Locus_id=Os02g0193500;Note=Conserved hypothetical protein.;Transcript_evidence=AK101237 (DDBJ%2C Best hit);ORF_evidence=A2X1Y3 (UniProt);NIAS_FLcDNA=J033031K13;TENOR=Os02t0193500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	5207171	5208022	.	+	.	Parent=Os02t0193500-01
Chr02	irgsp1_rep	CDS	5208023	5208463	.	+	0	Parent=Os02t0193500-01
Chr02	irgsp1_rep	three_prime_UTR	5208464	5208683	.	+	.	Parent=Os02t0193500-01
Chr02	irgsp1_rep	mRNA	5209234	5212362	.	+	.	ID=Os02t0193600-01;Name=Os02t0193600-01;Locus_id=Os02g0193600;Note=Mitotic checkpoint serine/threonine protein kinase%2C Bub1 domain containing protein.;Transcript_evidence=AK060499 (DDBJ%2C Best hit);ORF_evidence=B6U2B3 (UniProt);InterPro=Mad3/BUB1 homology region 1 (IPR013212),Mitotic checkpoint serine/threonine protein kinase%2C Bub1 (IPR015661);NIAS_FLcDNA=001-017-E12;Expression=AK060499;TENOR=Os02t0193600-01;KEGG=Os02t0193600-01 (EC:2.7.11.1)
Chr02	irgsp1_rep	five_prime_UTR	5209234	5209315	.	+	.	Parent=Os02t0193600-01
Chr02	irgsp1_rep	CDS	5209316	5209560	.	+	0	Parent=Os02t0193600-01
Chr02	irgsp1_rep	CDS	5209693	5209752	.	+	1	Parent=Os02t0193600-01
Chr02	irgsp1_rep	CDS	5209897	5210041	.	+	1	Parent=Os02t0193600-01
Chr02	irgsp1_rep	CDS	5210152	5210309	.	+	0	Parent=Os02t0193600-01
Chr02	irgsp1_rep	CDS	5210993	5211074	.	+	1	Parent=Os02t0193600-01
Chr02	irgsp1_rep	CDS	5211157	5211223	.	+	0	Parent=Os02t0193600-01
Chr02	irgsp1_rep	CDS	5211305	5211350	.	+	2	Parent=Os02t0193600-01
Chr02	irgsp1_rep	CDS	5211444	5211609	.	+	1	Parent=Os02t0193600-01
Chr02	irgsp1_rep	CDS	5211732	5211817	.	+	0	Parent=Os02t0193600-01
Chr02	irgsp1_rep	CDS	5211919	5211999	.	+	1	Parent=Os02t0193600-01
Chr02	irgsp1_rep	CDS	5212087	5212147	.	+	1	Parent=Os02t0193600-01
Chr02	irgsp1_rep	three_prime_UTR	5212148	5212362	.	+	.	Parent=Os02t0193600-01
Chr02	irgsp1_rep	mRNA	5215214	5215286	.	-	.	ID=Os02t0193666-00;Name=Os02t0193666-00;Locus_id=Os02g0193666;Note=Non-protein coding transcript.;Transcript_evidence=X06284 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0193666-00
Chr02	irgsp1_rep	exon	5215214	5215286	.	-	.	Parent=Os02t0193666-00
Chr02	irgsp1_rep	mRNA	5217698	5218063	.	+	.	ID=Os02t0193732-00;Name=Os02t0193732-00;Locus_id=Os02g0193732;Note=Hypothetical conserved gene.;Transcript_evidence=EU969100 (DDBJ);ORF_evidence=Q7F8R7 (UniProt);TENOR=Os02t0193732-00;KEGG=Os02t0193732-00
Chr02	irgsp1_rep	CDS	5217698	5218063	.	+	0	Parent=Os02t0193732-00
Chr02	irgsp1_rep	mRNA	5220258	5221796	.	-	.	ID=Os02t0193800-01;Name=Os02t0193800-01;Locus_id=Os02g0193800;Note=Similar to cDNA clone:002-103-F09%2C full insert sequence.;Transcript_evidence=AK108424 (DDBJ%2C Best hit);ORF_evidence=B7EZC9 (UniProt);NIAS_FLcDNA=002-143-A05;Expression=AK108424;TENOR=Os02t0193800-01;KEGG=Os02t0193800-01
Chr02	irgsp1_rep	five_prime_UTR	5221796	5221796	.	-	.	Parent=Os02t0193800-01
Chr02	irgsp1_rep	CDS	5221697	5221795	.	-	0	Parent=Os02t0193800-01
Chr02	irgsp1_rep	CDS	5220899	5221507	.	-	0	Parent=Os02t0193800-01
Chr02	irgsp1_rep	three_prime_UTR	5220730	5220898	.	-	.	Parent=Os02t0193800-01
Chr02	irgsp1_rep	three_prime_UTR	5220258	5220642	.	-	.	Parent=Os02t0193800-01
Chr02	irgsp1_rep	mRNA	5228734	5231330	.	+	.	ID=Os02t0193900-01;Name=Os02t0193900-01;Locus_id=Os02g0193900;Note=Similar to Mediator of RNA polymerase II transcription subunit 18.;Transcript_evidence=AK069578 (DDBJ%2C Best hit);ORF_evidence=B6STT5 (UniProt);NIAS_FLcDNA=J023020M17;Expression=AK069578;TENOR=Os02t0193900-01;KEGG=Os02t0193900-01
Chr02	irgsp1_rep	five_prime_UTR	5228734	5228926	.	+	.	Parent=Os02t0193900-01
Chr02	irgsp1_rep	five_prime_UTR	5229008	5229037	.	+	.	Parent=Os02t0193900-01
Chr02	irgsp1_rep	CDS	5229038	5229073	.	+	0	Parent=Os02t0193900-01
Chr02	irgsp1_rep	CDS	5230238	5230337	.	+	0	Parent=Os02t0193900-01
Chr02	irgsp1_rep	CDS	5230409	5230466	.	+	2	Parent=Os02t0193900-01
Chr02	irgsp1_rep	CDS	5230545	5230901	.	+	1	Parent=Os02t0193900-01
Chr02	irgsp1_rep	CDS	5230994	5231105	.	+	1	Parent=Os02t0193900-01
Chr02	irgsp1_rep	three_prime_UTR	5231106	5231330	.	+	.	Parent=Os02t0193900-01
Chr02	irgsp1_rep	mRNA	5228756	5231292	.	+	.	ID=Os02t0193900-02;Name=Os02t0193900-02;Locus_id=Os02g0193900;Note=Similar to Mediator of RNA polymerase II transcription subunit 18.;Transcript_evidence=AK104014 (DDBJ%2C Best hit);ORF_evidence=B6STT5 (UniProt);NIAS_FLcDNA=001-007-F02;Expression=AK104014;TENOR=Os02t0193900-02;KEGG=Os02t0193900-02
Chr02	irgsp1_rep	five_prime_UTR	5228756	5228926	.	+	.	Parent=Os02t0193900-02
Chr02	irgsp1_rep	five_prime_UTR	5229008	5229037	.	+	.	Parent=Os02t0193900-02
Chr02	irgsp1_rep	CDS	5229038	5229073	.	+	0	Parent=Os02t0193900-02
Chr02	irgsp1_rep	CDS	5230238	5230337	.	+	0	Parent=Os02t0193900-02
Chr02	irgsp1_rep	CDS	5230409	5230466	.	+	2	Parent=Os02t0193900-02
Chr02	irgsp1_rep	CDS	5230545	5230901	.	+	1	Parent=Os02t0193900-02
Chr02	irgsp1_rep	CDS	5230994	5231105	.	+	1	Parent=Os02t0193900-02
Chr02	irgsp1_rep	three_prime_UTR	5231106	5231292	.	+	.	Parent=Os02t0193900-02
Chr02	irgsp1_rep	mRNA	5232119	5232368	.	-	.	ID=Os02t0193933-00;Name=Os02t0193933-00;Locus_id=Os02g0193933;Note=Similar to predicted protein.;Transcript_evidence=EU941955 (DDBJ);ORF_evidence=XP_002327722.1 (RefSeq);TENOR=Os02t0193933-00;KEGG=Os02t0193933-00
Chr02	irgsp1_rep	five_prime_UTR	5232311	5232368	.	-	.	Parent=Os02t0193933-00
Chr02	irgsp1_rep	CDS	5232119	5232310	.	-	0	Parent=Os02t0193933-00
Chr02	irgsp1_rep	mRNA	5237732	5237887	.	-	.	ID=Os02t0193967-00;Name=Os02t0193967-00;Locus_id=Os02g0193967;Note=Non-protein coding transcript.;Transcript_evidence=EU941955 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0193967-00
Chr02	irgsp1_rep	exon	5237732	5237887	.	-	.	Parent=Os02t0193967-00
Chr02	irgsp1_rep	mRNA	5238175	5242106	.	+	.	ID=Os02t0194000-01;Name=Os02t0194000-01;Locus_id=Os02g0194000;Oryzabase Gene Symbol Synonym(s)=OsCHB702%2C CHB702%2C DLN49%2C OsDLN49;Oryzabase Gene Name Synonym(s)=SWIRM domain-containing protein CHB702%2C DLN repressor 49%2C DLN motif protein 49;Note=Similar to ATSWI3B.;Transcript_evidence=AK064096 (DDBJ%2C Best hit);ORF_evidence=B4FVC8 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),SANT%2C eukarya (IPR017884);NIAS_FLcDNA=002-100-F11;Oryzabase=12517;TENOR=Os02t0194000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	5238175	5238358	.	+	0	Parent=Os02t0194000-01
Chr02	irgsp1_rep	CDS	5238765	5238952	.	+	2	Parent=Os02t0194000-01
Chr02	irgsp1_rep	CDS	5240416	5240796	.	+	0	Parent=Os02t0194000-01
Chr02	irgsp1_rep	CDS	5241115	5241247	.	+	0	Parent=Os02t0194000-01
Chr02	irgsp1_rep	CDS	5241498	5241625	.	+	2	Parent=Os02t0194000-01
Chr02	irgsp1_rep	CDS	5241717	5241917	.	+	0	Parent=Os02t0194000-01
Chr02	irgsp1_rep	three_prime_UTR	5241918	5242106	.	+	.	Parent=Os02t0194000-01
Chr02	irgsp1_rep	mRNA	5242740	5249321	.	-	.	ID=Os02t0194100-01;Name=Os02t0194100-01;Locus_id=Os02g0194100;Note=Similar to Citrate synthase (EC 4.1.3.7).;Transcript_evidence=AK243001 (DDBJ%2C Best hit);ORF_evidence=Q9FUJ7 (UniProt);GO=Biological Process: tricarboxylic acid cycle (GO:0006099),Biological Process: cellular carbohydrate metabolic process (GO:0044262),Molecular Function: citrate (Si)-synthase activity (GO:0004108),Molecular Function: transferase activity%2C transferring acyl groups%2C acyl groups converted into alkyl on transfer (GO:0046912);InterPro=Citrate synthase-like (IPR002020),Citrate synthase%2C eukaryotic (IPR010109),Citrate synthase-like%2C core (IPR016141),Citrate synthase-like%2C large alpha subdomain (IPR016142),Citrate synthase active site (IPR019810);NIAS_FLcDNA=J090095N15;TENOR=Os02t0194100-01;KEGG=Os02t0194100-01 (EC:2.3.3.1%2C EC:4.1.3.7)
Chr02	irgsp1_rep	five_prime_UTR	5249192	5249321	.	-	.	Parent=Os02t0194100-01
Chr02	irgsp1_rep	five_prime_UTR	5248798	5248827	.	-	.	Parent=Os02t0194100-01
Chr02	irgsp1_rep	CDS	5248747	5248797	.	-	0	Parent=Os02t0194100-01
Chr02	irgsp1_rep	CDS	5248593	5248655	.	-	0	Parent=Os02t0194100-01
Chr02	irgsp1_rep	CDS	5248408	5248449	.	-	0	Parent=Os02t0194100-01
Chr02	irgsp1_rep	CDS	5247716	5247781	.	-	0	Parent=Os02t0194100-01
Chr02	irgsp1_rep	CDS	5247561	5247626	.	-	0	Parent=Os02t0194100-01
Chr02	irgsp1_rep	CDS	5246956	5247069	.	-	0	Parent=Os02t0194100-01
Chr02	irgsp1_rep	CDS	5246783	5246846	.	-	0	Parent=Os02t0194100-01
Chr02	irgsp1_rep	CDS	5246029	5246111	.	-	2	Parent=Os02t0194100-01
Chr02	irgsp1_rep	CDS	5245765	5245814	.	-	0	Parent=Os02t0194100-01
Chr02	irgsp1_rep	CDS	5245602	5245679	.	-	1	Parent=Os02t0194100-01
Chr02	irgsp1_rep	CDS	5245374	5245502	.	-	1	Parent=Os02t0194100-01
Chr02	irgsp1_rep	CDS	5245244	5245286	.	-	1	Parent=Os02t0194100-01
Chr02	irgsp1_rep	CDS	5244419	5244505	.	-	0	Parent=Os02t0194100-01
Chr02	irgsp1_rep	CDS	5244134	5244235	.	-	0	Parent=Os02t0194100-01
Chr02	irgsp1_rep	CDS	5243766	5243873	.	-	0	Parent=Os02t0194100-01
Chr02	irgsp1_rep	CDS	5243636	5243686	.	-	0	Parent=Os02t0194100-01
Chr02	irgsp1_rep	CDS	5243456	5243529	.	-	0	Parent=Os02t0194100-01
Chr02	irgsp1_rep	CDS	5243283	5243334	.	-	1	Parent=Os02t0194100-01
Chr02	irgsp1_rep	CDS	5243067	5243162	.	-	0	Parent=Os02t0194100-01
Chr02	irgsp1_rep	three_prime_UTR	5242740	5243066	.	-	.	Parent=Os02t0194100-01
Chr02	irgsp1_rep	mRNA	5250033	5253692	.	+	.	ID=Os02t0194200-01;Name=Os02t0194200-01;Locus_id=Os02g0194200;CGSNL Gene Symbol=C3H14;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14;Oryzabase Gene Symbol Synonym(s)=OsC3H14;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 14;Note=K Homology%2C type 1%2C subgroup domain containing protein.;Transcript_evidence=AK242341 (DDBJ%2C Best hit);ORF_evidence=NP_001150722.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571),K Homology (IPR004087),K Homology%2C type 1 (IPR004088),K Homology%2C type 1%2C subgroup (IPR018111);NIAS_FLcDNA=J075199P17;Oryzabase=8577;TENOR=Os02t0194200-01;KEGG=Os02t0194200-01
Chr02	irgsp1_rep	five_prime_UTR	5250033	5251208	.	+	.	Parent=Os02t0194200-01
Chr02	irgsp1_rep	CDS	5251209	5251278	.	+	0	Parent=Os02t0194200-01
Chr02	irgsp1_rep	CDS	5251861	5251921	.	+	2	Parent=Os02t0194200-01
Chr02	irgsp1_rep	CDS	5252786	5253557	.	+	1	Parent=Os02t0194200-01
Chr02	irgsp1_rep	three_prime_UTR	5253558	5253692	.	+	.	Parent=Os02t0194200-01
Chr02	irgsp1_rep	mRNA	5254204	5257596	.	-	.	ID=Os02t0194300-01;Name=Os02t0194300-01;Locus_id=Os02g0194300;Note=Nse4 domain containing protein.;Transcript_evidence=AK072385 (DDBJ%2C Best hit);ORF_evidence=B9F3U1 (UniProt);InterPro=Nse4 (IPR014854);NIAS_FLcDNA=J023080M13;TENOR=Os02t0194300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	5257387	5257596	.	-	.	Parent=Os02t0194300-01
Chr02	irgsp1_rep	CDS	5257281	5257386	.	-	0	Parent=Os02t0194300-01
Chr02	irgsp1_rep	CDS	5256960	5257183	.	-	2	Parent=Os02t0194300-01
Chr02	irgsp1_rep	three_prime_UTR	5256178	5256959	.	-	.	Parent=Os02t0194300-01
Chr02	irgsp1_rep	three_prime_UTR	5255975	5256071	.	-	.	Parent=Os02t0194300-01
Chr02	irgsp1_rep	three_prime_UTR	5255094	5255504	.	-	.	Parent=Os02t0194300-01
Chr02	irgsp1_rep	three_prime_UTR	5254204	5254709	.	-	.	Parent=Os02t0194300-01
Chr02	irgsp1_rep	mRNA	5255089	5257507	.	+	.	ID=Os02t0194350-00;Name=Os02t0194350-00;Locus_id=Os02g0194350;Note=Hypothetical protein.;Transcript_evidence=tplb0041g04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0194350-00
Chr02	irgsp1_rep	five_prime_UTR	5255089	5255183	.	+	.	Parent=Os02t0194350-00
Chr02	irgsp1_rep	five_prime_UTR	5255286	5255313	.	+	.	Parent=Os02t0194350-00
Chr02	irgsp1_rep	CDS	5255314	5255515	.	+	0	Parent=Os02t0194350-00
Chr02	irgsp1_rep	CDS	5255989	5256063	.	+	2	Parent=Os02t0194350-00
Chr02	irgsp1_rep	CDS	5256169	5256248	.	+	2	Parent=Os02t0194350-00
Chr02	irgsp1_rep	three_prime_UTR	5256249	5256425	.	+	.	Parent=Os02t0194350-00
Chr02	irgsp1_rep	three_prime_UTR	5257107	5257169	.	+	.	Parent=Os02t0194350-00
Chr02	irgsp1_rep	three_prime_UTR	5257273	5257507	.	+	.	Parent=Os02t0194350-00
Chr02	irgsp1_rep	mRNA	5259822	5261341	.	-	.	ID=Os02t0194400-01;Name=Os02t0194400-01;Locus_id=Os02g0194400;Oryzabase Gene Symbol Synonym(s)=OsSRK%2C SRK;Oryzabase Gene Name Synonym(s)=stress-responsive leucine-rich repeat receptor-like kinase%2C stress-responsive LRR-like kinase;Note=Similar to Receptor-like kinase (Fragment).;Transcript_evidence=AK110011 (DDBJ%2C Best hit);ORF_evidence=A7VM26 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=002-159-G09;Oryzabase=20964;TENOR=Os02t0194400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	5261299	5261341	.	-	.	Parent=Os02t0194400-01
Chr02	irgsp1_rep	CDS	5259952	5261298	.	-	0	Parent=Os02t0194400-01
Chr02	irgsp1_rep	three_prime_UTR	5259822	5259951	.	-	.	Parent=Os02t0194400-01
Chr02	irgsp1_rep	mRNA	5259822	5266512	.	-	.	ID=Os02t0194400-02;Name=Os02t0194400-02;Locus_id=Os02g0194400;RAP-DB Gene Symbol Synonym(s)=MSL1%2C OsSRK;RAP-DB Gene Name Synonym(s)=MSP1-like1%2C stress-responsive LRR-like kinase%2C stress-responsive leucine-rich repeat receptor-like kinase;Oryzabase Gene Symbol Synonym(s)=OsSRK%2C SRK;Oryzabase Gene Name Synonym(s)=stress-responsive leucine-rich repeat receptor-like kinase%2C stress-responsive LRR-like kinase;Note=Leucine-rich repeat receptor-like kinase%2C Target gene of microRNA390%2C Cadmium stress response;Transcript_evidence=Inferred from literature;ORF_evidence=Q7F8Q9;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=Leucine-rich repeat domain%2C L domain-like (IPR032675),Leucine-rich repeat-containing N-terminal%2C plant-type (IPR013210),Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);Manual Curation=June 16%2C 2017;Literature_PMID=26973678,18248596;Oryzabase=20964
Chr02	irgsp1_rep	CDS	5266210	5266512	.	-	0	Parent=Os02t0194400-02
Chr02	irgsp1_rep	CDS	5259952	5263890	.	-	0	Parent=Os02t0194400-02
Chr02	irgsp1_rep	three_prime_UTR	5259822	5259951	.	-	.	Parent=Os02t0194400-02
Chr02	irgsp1_rep	mRNA	5270614	5276091	.	+	.	ID=Os02t0194600-00;Name=Os02t0194600-00;Locus_id=Os02g0194600;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9F3U2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os02t0194600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	5270614	5270666	.	+	0	Parent=Os02t0194600-00
Chr02	irgsp1_rep	CDS	5270817	5270917	.	+	1	Parent=Os02t0194600-00
Chr02	irgsp1_rep	CDS	5271161	5271266	.	+	2	Parent=Os02t0194600-00
Chr02	irgsp1_rep	CDS	5271536	5271607	.	+	1	Parent=Os02t0194600-00
Chr02	irgsp1_rep	CDS	5272129	5272200	.	+	1	Parent=Os02t0194600-00
Chr02	irgsp1_rep	CDS	5272284	5272349	.	+	1	Parent=Os02t0194600-00
Chr02	irgsp1_rep	CDS	5272429	5272494	.	+	1	Parent=Os02t0194600-00
Chr02	irgsp1_rep	CDS	5272604	5272866	.	+	1	Parent=Os02t0194600-00
Chr02	irgsp1_rep	CDS	5273206	5273459	.	+	2	Parent=Os02t0194600-00
Chr02	irgsp1_rep	CDS	5273889	5274160	.	+	0	Parent=Os02t0194600-00
Chr02	irgsp1_rep	CDS	5274336	5274477	.	+	1	Parent=Os02t0194600-00
Chr02	irgsp1_rep	CDS	5275177	5275316	.	+	0	Parent=Os02t0194600-00
Chr02	irgsp1_rep	CDS	5275384	5275540	.	+	1	Parent=Os02t0194600-00
Chr02	irgsp1_rep	CDS	5275800	5275968	.	+	0	Parent=Os02t0194600-00
Chr02	irgsp1_rep	CDS	5276051	5276091	.	+	2	Parent=Os02t0194600-00
Chr02	irgsp1_rep	mRNA	5276686	5282626	.	-	.	ID=Os02t0194700-01;Name=Os02t0194700-01;Locus_id=Os02g0194700;CGSNL Gene Symbol=LOX1;CGSNL Gene Name=LIPOXYGENASE 1;Oryzabase Gene Symbol Synonym(s)=OsLOX1%2C OsLOX5;Oryzabase Gene Name Synonym(s)=lipoxygenase 1;Note=Similar to Lipoxygenase 2.3%2C chloroplast precursor (EC 1.13.11.12) (LOX2:Hv:3).;Transcript_evidence=AK071915 (DDBJ%2C Best hit);ORF_evidence=B8AJB1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: protein binding (GO:0005515),Molecular Function: lipoxygenase activity (GO:0016165),Molecular Function: oxidoreductase activity%2C acting on single donors with incorporation of molecular oxygen%2C incorporation of two atoms of oxygen (GO:0016702),Molecular Function: metal ion binding (GO:0046872);InterPro=Lipoxygenase (IPR000907),Lipoxygenase%2C LH2 (IPR001024),Lipoxygenase%2C plant (IPR001246),Lipase/lipooxygenase%2C PLAT/LH2 (IPR008976),Lipoxygenase%2C C-terminal (IPR013819),Lipoxygenase%2C iron binding site (IPR020833),Lipoxygenase%2C conserved site (IPR020834);NIAS_FLcDNA=J013074B03;Oryzabase=10387;Expression=AK071915;TENOR=Os02t0194700-01;KEGG=Os02t0194700-01 (EC:1.13.11.12)
Chr02	irgsp1_rep	five_prime_UTR	5282530	5282626	.	-	.	Parent=Os02t0194700-01
Chr02	irgsp1_rep	CDS	5282151	5282529	.	-	0	Parent=Os02t0194700-01
Chr02	irgsp1_rep	CDS	5281790	5282055	.	-	2	Parent=Os02t0194700-01
Chr02	irgsp1_rep	CDS	5281456	5281693	.	-	0	Parent=Os02t0194700-01
Chr02	irgsp1_rep	CDS	5280637	5281014	.	-	2	Parent=Os02t0194700-01
Chr02	irgsp1_rep	CDS	5280166	5280251	.	-	2	Parent=Os02t0194700-01
Chr02	irgsp1_rep	CDS	5276966	5278399	.	-	0	Parent=Os02t0194700-01
Chr02	irgsp1_rep	three_prime_UTR	5276686	5276965	.	-	.	Parent=Os02t0194700-01
Chr02	irgsp1_rep	mRNA	5276758	5281599	.	-	.	ID=Os02t0194700-02;Name=Os02t0194700-02;Locus_id=Os02g0194700;CGSNL Gene Symbol=LOX1;CGSNL Gene Name=LIPOXYGENASE 1;Oryzabase Gene Symbol Synonym(s)=OsLOX1%2C OsLOX5;Oryzabase Gene Name Synonym(s)=lipoxygenase 1;Note=Similar to Lipoxygenase.;Transcript_evidence=AK061610 (DDBJ%2C Best hit);ORF_evidence=B8AJB1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: lipoxygenase activity (GO:0016165),Molecular Function: oxidoreductase activity%2C acting on single donors with incorporation of molecular oxygen%2C incorporation of two atoms of oxygen (GO:0016702),Molecular Function: metal ion binding (GO:0046872);InterPro=Lipoxygenase (IPR000907),Lipoxygenase%2C plant (IPR001246),Lipoxygenase%2C C-terminal (IPR013819),Lipoxygenase%2C iron binding site (IPR020833),Lipoxygenase%2C conserved site (IPR020834);NIAS_FLcDNA=001-032-B01;Oryzabase=10387;Expression=AK061610;TENOR=Os02t0194700-02;KEGG=Os02t0194700-02 (EC:1.13.11.12)
Chr02	irgsp1_rep	five_prime_UTR	5281598	5281599	.	-	.	Parent=Os02t0194700-02
Chr02	irgsp1_rep	CDS	5281456	5281597	.	-	0	Parent=Os02t0194700-02
Chr02	irgsp1_rep	CDS	5280637	5281014	.	-	2	Parent=Os02t0194700-02
Chr02	irgsp1_rep	CDS	5280166	5280251	.	-	2	Parent=Os02t0194700-02
Chr02	irgsp1_rep	CDS	5276966	5278399	.	-	0	Parent=Os02t0194700-02
Chr02	irgsp1_rep	three_prime_UTR	5276758	5276965	.	-	.	Parent=Os02t0194700-02
Chr02	irgsp1_rep	mRNA	5297666	5306436	.	-	.	ID=Os02t0194800-01;Name=Os02t0194800-01;Locus_id=Os02g0194800;Note=C-CAP/cofactor C-like domain domain containing protein.;Transcript_evidence=AK120869 (DDBJ%2C Best hit);ORF_evidence=A2Q4U5 (UniProt);GO=Biological Process: cell morphogenesis (GO:0000902),Molecular Function: binding (GO:0005488);InterPro=CARP motif (IPR006599),Tubulin binding cofactor C (IPR012945),Cyclase-associated protein CAP/septum formation inhibitor MinC%2C C-terminal (IPR016098),C-CAP/cofactor C-like domain (IPR017901);NIAS_FLcDNA=J023026A17;Expression=AK120869;TENOR=Os02t0194800-01;KEGG=Os02t0194800-01
Chr02	irgsp1_rep	five_prime_UTR	5306290	5306436	.	-	.	Parent=Os02t0194800-01
Chr02	irgsp1_rep	CDS	5305780	5306289	.	-	0	Parent=Os02t0194800-01
Chr02	irgsp1_rep	CDS	5304574	5304714	.	-	0	Parent=Os02t0194800-01
Chr02	irgsp1_rep	CDS	5303486	5303875	.	-	0	Parent=Os02t0194800-01
Chr02	irgsp1_rep	CDS	5302724	5302828	.	-	0	Parent=Os02t0194800-01
Chr02	irgsp1_rep	CDS	5302035	5302175	.	-	0	Parent=Os02t0194800-01
Chr02	irgsp1_rep	CDS	5300645	5300848	.	-	0	Parent=Os02t0194800-01
Chr02	irgsp1_rep	CDS	5300210	5300302	.	-	0	Parent=Os02t0194800-01
Chr02	irgsp1_rep	CDS	5299616	5299727	.	-	0	Parent=Os02t0194800-01
Chr02	irgsp1_rep	CDS	5298005	5298048	.	-	2	Parent=Os02t0194800-01
Chr02	irgsp1_rep	three_prime_UTR	5297666	5298004	.	-	.	Parent=Os02t0194800-01
Chr02	irgsp1_rep	mRNA	5297698	5306403	.	-	.	ID=Os02t0194800-02;Name=Os02t0194800-02;Locus_id=Os02g0194800;Note=C-CAP/cofactor C-like domain domain containing protein.;Transcript_evidence=AK121281 (DDBJ%2C Best hit);ORF_evidence=A2Q4U5 (UniProt);GO=Biological Process: cell morphogenesis (GO:0000902),Molecular Function: binding (GO:0005488);InterPro=CARP motif (IPR006599),Tubulin binding cofactor C (IPR012945),Cyclase-associated protein CAP/septum formation inhibitor MinC%2C C-terminal (IPR016098),C-CAP/cofactor C-like domain (IPR017901);NIAS_FLcDNA=J023108L07;Expression=AK121281;TENOR=Os02t0194800-02;KEGG=Os02t0194800-02
Chr02	irgsp1_rep	five_prime_UTR	5306290	5306403	.	-	.	Parent=Os02t0194800-02
Chr02	irgsp1_rep	CDS	5305780	5306289	.	-	0	Parent=Os02t0194800-02
Chr02	irgsp1_rep	CDS	5304574	5304714	.	-	0	Parent=Os02t0194800-02
Chr02	irgsp1_rep	CDS	5303486	5303875	.	-	0	Parent=Os02t0194800-02
Chr02	irgsp1_rep	CDS	5302724	5302828	.	-	0	Parent=Os02t0194800-02
Chr02	irgsp1_rep	CDS	5302035	5302175	.	-	0	Parent=Os02t0194800-02
Chr02	irgsp1_rep	CDS	5300645	5300848	.	-	0	Parent=Os02t0194800-02
Chr02	irgsp1_rep	CDS	5300210	5300302	.	-	0	Parent=Os02t0194800-02
Chr02	irgsp1_rep	CDS	5299616	5299727	.	-	0	Parent=Os02t0194800-02
Chr02	irgsp1_rep	CDS	5298005	5298048	.	-	2	Parent=Os02t0194800-02
Chr02	irgsp1_rep	three_prime_UTR	5297698	5298004	.	-	.	Parent=Os02t0194800-02
Chr02	irgsp1_rep	mRNA	5297696	5297997	.	-	.	ID=Os02t0194800-03;Name=Os02t0194800-03;Locus_id=Os02g0194800;Note=Non-protein coding transcript.;Transcript_evidence=AK058976 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-020-D06;TENOR=Os02t0194800-03
Chr02	irgsp1_rep	exon	5297696	5297997	.	-	.	Parent=Os02t0194800-03
Chr02	irgsp1_rep	mRNA	5316388	5324083	.	+	.	ID=Os02t0194900-00;Name=Os02t0194900-00;Locus_id=Os02g0194900;CGSNL Gene Symbol=BZIP17;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 17;Oryzabase Gene Symbol Synonym(s)=OsbZIP17;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 17;Note=Basic-leucine zipper (bZIP) transcription factor domain containing protein.;Transcript_evidence=BT043436 (DDBJ);ORF_evidence=Q6H7Q7 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);Oryzabase=10106;TENOR=Os02t0194900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	5316388	5316579	.	+	0	Parent=Os02t0194900-00
Chr02	irgsp1_rep	CDS	5317012	5317140	.	+	0	Parent=Os02t0194900-00
Chr02	irgsp1_rep	CDS	5317668	5318009	.	+	0	Parent=Os02t0194900-00
Chr02	irgsp1_rep	CDS	5321779	5322039	.	+	0	Parent=Os02t0194900-00
Chr02	irgsp1_rep	CDS	5323886	5324083	.	+	0	Parent=Os02t0194900-00
Chr02	irgsp1_rep	mRNA	5324568	5328286	.	-	.	ID=Os02t0195000-01;Name=Os02t0195000-01;Locus_id=Os02g0195000;Note=Protein of unknown function DUF2048 domain containing protein.;Transcript_evidence=AK109481 (DDBJ%2C Best hit);ORF_evidence=B8A0V1 (UniProt);InterPro=Protein of unknown function DUF2048 (IPR019149);NIAS_FLcDNA=001-202-B01;TENOR=Os02t0195000-01
Chr02	irgsp1_rep	five_prime_UTR	5327965	5328286	.	-	.	Parent=Os02t0195000-01
Chr02	irgsp1_rep	five_prime_UTR	5327152	5327223	.	-	.	Parent=Os02t0195000-01
Chr02	irgsp1_rep	CDS	5326776	5327151	.	-	0	Parent=Os02t0195000-01
Chr02	irgsp1_rep	CDS	5326348	5326432	.	-	2	Parent=Os02t0195000-01
Chr02	irgsp1_rep	CDS	5326077	5326246	.	-	1	Parent=Os02t0195000-01
Chr02	irgsp1_rep	CDS	5325330	5325643	.	-	2	Parent=Os02t0195000-01
Chr02	irgsp1_rep	CDS	5324808	5324963	.	-	0	Parent=Os02t0195000-01
Chr02	irgsp1_rep	three_prime_UTR	5324568	5324807	.	-	.	Parent=Os02t0195000-01
Chr02	irgsp1_rep	mRNA	5324582	5328214	.	-	.	ID=Os02t0195000-02;Name=Os02t0195000-02;Locus_id=Os02g0195000;Note=Protein of unknown function DUF2048 domain containing protein.;Transcript_evidence=AK102395 (DDBJ%2C Best hit);ORF_evidence=B8A0V1 (UniProt);InterPro=Protein of unknown function DUF2048 (IPR019149);NIAS_FLcDNA=J033092H01;TENOR=Os02t0195000-02
Chr02	irgsp1_rep	five_prime_UTR	5327965	5328214	.	-	.	Parent=Os02t0195000-02
Chr02	irgsp1_rep	five_prime_UTR	5327152	5327223	.	-	.	Parent=Os02t0195000-02
Chr02	irgsp1_rep	CDS	5326776	5327151	.	-	0	Parent=Os02t0195000-02
Chr02	irgsp1_rep	CDS	5326348	5326432	.	-	2	Parent=Os02t0195000-02
Chr02	irgsp1_rep	CDS	5326077	5326246	.	-	1	Parent=Os02t0195000-02
Chr02	irgsp1_rep	CDS	5325330	5325643	.	-	2	Parent=Os02t0195000-02
Chr02	irgsp1_rep	CDS	5324808	5324963	.	-	0	Parent=Os02t0195000-02
Chr02	irgsp1_rep	three_prime_UTR	5324582	5324807	.	-	.	Parent=Os02t0195000-02
Chr02	irgsp1_rep	mRNA	5331919	5336909	.	-	.	ID=Os02t0195300-01;Name=Os02t0195300-01;Locus_id=Os02g0195300;Oryzabase Gene Symbol Synonym(s)=OsDjC16%2C OsP58A;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C16;Note=Similar to dnaJ subfamily C member 7.;Transcript_evidence=AK243008 (DDBJ%2C Best hit);ORF_evidence=NP_001148532.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide TPR2 (IPR013105),Heat shock protein DnaJ%2C conserved site (IPR018253),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J090097H12;Oryzabase=12173;TENOR=Os02t0195300-01;KEGG=Os02t0195300-01
Chr02	irgsp1_rep	five_prime_UTR	5336670	5336909	.	-	.	Parent=Os02t0195300-01
Chr02	irgsp1_rep	five_prime_UTR	5336297	5336315	.	-	.	Parent=Os02t0195300-01
Chr02	irgsp1_rep	CDS	5336209	5336296	.	-	0	Parent=Os02t0195300-01
Chr02	irgsp1_rep	CDS	5335620	5335785	.	-	2	Parent=Os02t0195300-01
Chr02	irgsp1_rep	CDS	5335115	5335316	.	-	1	Parent=Os02t0195300-01
Chr02	irgsp1_rep	CDS	5334861	5335021	.	-	0	Parent=Os02t0195300-01
Chr02	irgsp1_rep	CDS	5334638	5334731	.	-	1	Parent=Os02t0195300-01
Chr02	irgsp1_rep	CDS	5334348	5334560	.	-	0	Parent=Os02t0195300-01
Chr02	irgsp1_rep	CDS	5333781	5333862	.	-	0	Parent=Os02t0195300-01
Chr02	irgsp1_rep	CDS	5332676	5332893	.	-	2	Parent=Os02t0195300-01
Chr02	irgsp1_rep	CDS	5332146	5332352	.	-	0	Parent=Os02t0195300-01
Chr02	irgsp1_rep	three_prime_UTR	5331919	5332145	.	-	.	Parent=Os02t0195300-01
Chr02	irgsp1_rep	mRNA	5339190	5344518	.	+	.	ID=Os02t0195500-01;Name=Os02t0195500-01;Locus_id=Os02g0195500;Note=Protein of unknown function DUF1680 family protein.;Transcript_evidence=AK121049 (DDBJ%2C Best hit);ORF_evidence=A2X202 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Six-hairpin glycosidase-like (IPR008928),Protein of unknown function DUF1680 (IPR012878);NIAS_FLcDNA=J023055F20;Expression=AK121049;TENOR=Os02t0195500-01;KEGG=Os02t0195500-01
Chr02	irgsp1_rep	five_prime_UTR	5339190	5339408	.	+	.	Parent=Os02t0195500-01
Chr02	irgsp1_rep	CDS	5339409	5340021	.	+	0	Parent=Os02t0195500-01
Chr02	irgsp1_rep	CDS	5340118	5340320	.	+	2	Parent=Os02t0195500-01
Chr02	irgsp1_rep	CDS	5340409	5340606	.	+	0	Parent=Os02t0195500-01
Chr02	irgsp1_rep	CDS	5340704	5340775	.	+	0	Parent=Os02t0195500-01
Chr02	irgsp1_rep	CDS	5341198	5341293	.	+	0	Parent=Os02t0195500-01
Chr02	irgsp1_rep	CDS	5341829	5341908	.	+	0	Parent=Os02t0195500-01
Chr02	irgsp1_rep	CDS	5341994	5342069	.	+	1	Parent=Os02t0195500-01
Chr02	irgsp1_rep	CDS	5342153	5342363	.	+	0	Parent=Os02t0195500-01
Chr02	irgsp1_rep	CDS	5342563	5342756	.	+	2	Parent=Os02t0195500-01
Chr02	irgsp1_rep	CDS	5342835	5342940	.	+	0	Parent=Os02t0195500-01
Chr02	irgsp1_rep	CDS	5343038	5343127	.	+	2	Parent=Os02t0195500-01
Chr02	irgsp1_rep	CDS	5343471	5344207	.	+	2	Parent=Os02t0195500-01
Chr02	irgsp1_rep	three_prime_UTR	5344208	5344518	.	+	.	Parent=Os02t0195500-01
Chr02	irgsp1_rep	mRNA	5339826	5344365	.	+	.	ID=Os02t0195500-02;Name=Os02t0195500-02;Locus_id=Os02g0195500;Note=Similar to predicted protein.;Transcript_evidence=AK066481 (DDBJ%2C Best hit);ORF_evidence=NP_196800.2 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Six-hairpin glycosidase-like (IPR008928),Protein of unknown function DUF1680 (IPR012878);NIAS_FLcDNA=J013070I10;Expression=AK066481;TENOR=Os02t0195500-02;KEGG=Os02t0195500-02
Chr02	irgsp1_rep	CDS	5339826	5340021	.	+	0	Parent=Os02t0195500-02
Chr02	irgsp1_rep	CDS	5340118	5340320	.	+	2	Parent=Os02t0195500-02
Chr02	irgsp1_rep	CDS	5340409	5340606	.	+	0	Parent=Os02t0195500-02
Chr02	irgsp1_rep	CDS	5340704	5340775	.	+	0	Parent=Os02t0195500-02
Chr02	irgsp1_rep	CDS	5341198	5341293	.	+	0	Parent=Os02t0195500-02
Chr02	irgsp1_rep	CDS	5341829	5341908	.	+	0	Parent=Os02t0195500-02
Chr02	irgsp1_rep	CDS	5341994	5342069	.	+	1	Parent=Os02t0195500-02
Chr02	irgsp1_rep	CDS	5342153	5342363	.	+	0	Parent=Os02t0195500-02
Chr02	irgsp1_rep	CDS	5342563	5342756	.	+	2	Parent=Os02t0195500-02
Chr02	irgsp1_rep	CDS	5342835	5342940	.	+	0	Parent=Os02t0195500-02
Chr02	irgsp1_rep	CDS	5343038	5343127	.	+	2	Parent=Os02t0195500-02
Chr02	irgsp1_rep	CDS	5343471	5344207	.	+	2	Parent=Os02t0195500-02
Chr02	irgsp1_rep	three_prime_UTR	5344208	5344365	.	+	.	Parent=Os02t0195500-02
Chr02	irgsp1_rep	mRNA	5340529	5344485	.	+	.	ID=Os02t0195500-03;Name=Os02t0195500-03;Locus_id=Os02g0195500;Note=Similar to catalytic.;Transcript_evidence=AK062207 (DDBJ%2C Best hit);ORF_evidence=NP_196800.2 (RefSeq);InterPro=Protein of unknown function DUF1680 (IPR012878);NIAS_FLcDNA=001-046-H07;TENOR=Os02t0195500-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	5340529	5340570	.	+	.	Parent=Os02t0195500-03
Chr02	irgsp1_rep	CDS	5340571	5340606	.	+	0	Parent=Os02t0195500-03
Chr02	irgsp1_rep	CDS	5340704	5340775	.	+	0	Parent=Os02t0195500-03
Chr02	irgsp1_rep	CDS	5341198	5341293	.	+	0	Parent=Os02t0195500-03
Chr02	irgsp1_rep	CDS	5341829	5341908	.	+	0	Parent=Os02t0195500-03
Chr02	irgsp1_rep	CDS	5341994	5342069	.	+	1	Parent=Os02t0195500-03
Chr02	irgsp1_rep	CDS	5342153	5342363	.	+	0	Parent=Os02t0195500-03
Chr02	irgsp1_rep	CDS	5342563	5342756	.	+	2	Parent=Os02t0195500-03
Chr02	irgsp1_rep	CDS	5342835	5342940	.	+	0	Parent=Os02t0195500-03
Chr02	irgsp1_rep	CDS	5343038	5343127	.	+	2	Parent=Os02t0195500-03
Chr02	irgsp1_rep	CDS	5343471	5344207	.	+	2	Parent=Os02t0195500-03
Chr02	irgsp1_rep	three_prime_UTR	5344208	5344485	.	+	.	Parent=Os02t0195500-03
Chr02	irgsp1_rep	mRNA	5339353	5340033	.	-	.	ID=Os02t0195533-00;Name=Os02t0195533-00;Locus_id=Os02g0195533;Note=Hypothetical protein.;Transcript_evidence=AK360007 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0195533-00
Chr02	irgsp1_rep	five_prime_UTR	5340033	5340033	.	-	.	Parent=Os02t0195533-00
Chr02	irgsp1_rep	CDS	5339379	5340032	.	-	0	Parent=Os02t0195533-00
Chr02	irgsp1_rep	three_prime_UTR	5339353	5339378	.	-	.	Parent=Os02t0195533-00
Chr02	irgsp1_rep	mRNA	5343023	5344207	.	-	.	ID=Os02t0195566-00;Name=Os02t0195566-00;Locus_id=Os02g0195566;Note=Non-protein coding transcript.;Transcript_evidence=EU971186 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0195566-00
Chr02	irgsp1_rep	exon	5343351	5344207	.	-	.	Parent=Os02t0195566-00
Chr02	irgsp1_rep	exon	5343023	5343200	.	-	.	Parent=Os02t0195566-00
Chr02	irgsp1_rep	mRNA	5345719	5347486	.	-	.	ID=Os02t0195600-01;Name=Os02t0195600-01;Locus_id=Os02g0195600;RAP-DB Gene Symbol Synonym(s)=SAP4%2C OsSAP4%2C ZFP185;RAP-DB Gene Name Synonym(s)=STRESS ASSOCIATED PROTEIN GENE 4%2C stress-associated protein 4;CGSNL Gene Symbol=SAP4;CGSNL Gene Name=STRESS ASSOCIATED PROTEIN GENE 4;Oryzabase Gene Symbol Synonym(s)=OsSAP4;Oryzabase Gene Name Synonym(s)=stress-associated protein 4;Note=A20/AN1-type zinc finger protein%2C Regulation of plant growth and abiotic stress response%2C Modulation of gibberellins (GA) and abscisic acid (ABA) biosynthesis;Transcript_evidence=AK067403;ORF_evidence=Q6H7P8;GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C A20-type (IPR002653),Zinc finger%2C AN1-type (IPR000058);NIAS_FLcDNA=J013106E09;Manual Curation=June 2%2C 2016;Literature_PMID=26512055,17033811;Oryzabase=18182;Expression=AK067403;TENOR=Os02t0195600-01;KEGG=Os02t0195600-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	5347340	5347486	.	-	.	Parent=Os02t0195600-01
Chr02	irgsp1_rep	five_prime_UTR	5346559	5346570	.	-	.	Parent=Os02t0195600-01
Chr02	irgsp1_rep	CDS	5346037	5346558	.	-	0	Parent=Os02t0195600-01
Chr02	irgsp1_rep	three_prime_UTR	5345719	5346036	.	-	.	Parent=Os02t0195600-01
Chr02	irgsp1_rep	mRNA	5345711	5347476	.	-	.	ID=Os02t0195600-02;Name=Os02t0195600-02;Locus_id=Os02g0195600;CGSNL Gene Symbol=SAP4;CGSNL Gene Name=STRESS ASSOCIATED PROTEIN GENE 4;Oryzabase Gene Symbol Synonym(s)=OsSAP4;Oryzabase Gene Name Synonym(s)=stress-associated protein 4;Note=Zinc finger%2C AN1-type domain containing protein.;Transcript_evidence=AK061911 (DDBJ%2C Best hit);ORF_evidence=Q6H7P8 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C AN1-type (IPR000058),Zinc finger%2C A20-type (IPR002653);NIAS_FLcDNA=001-042-A06;Oryzabase=18182;Expression=AK061911;TENOR=Os02t0195600-02;KEGG=Os02t0195600-02;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	5347346	5347476	.	-	.	Parent=Os02t0195600-02
Chr02	irgsp1_rep	five_prime_UTR	5346559	5346570	.	-	.	Parent=Os02t0195600-02
Chr02	irgsp1_rep	CDS	5346037	5346558	.	-	0	Parent=Os02t0195600-02
Chr02	irgsp1_rep	three_prime_UTR	5345711	5346036	.	-	.	Parent=Os02t0195600-02
Chr02	irgsp1_rep	mRNA	5351467	5355145	.	+	.	ID=Os02t0195800-01;Name=Os02t0195800-01;Locus_id=Os02g0195800;Oryzabase Gene Symbol Synonym(s)=OsDjC17;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C17;Note=Similar to Chaperone protein dnaJ 6 (AtJ6) (AtDjC6).;Transcript_evidence=AK101350 (DDBJ%2C Best hit);ORF_evidence=NP_001150767.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095);NIAS_FLcDNA=J033034N17;Oryzabase=12174;Expression=AK101350;TENOR=Os02t0195800-01;KEGG=Os02t0195800-01
Chr02	irgsp1_rep	five_prime_UTR	5351467	5351503	.	+	.	Parent=Os02t0195800-01
Chr02	irgsp1_rep	CDS	5351504	5351602	.	+	0	Parent=Os02t0195800-01
Chr02	irgsp1_rep	CDS	5353401	5353499	.	+	0	Parent=Os02t0195800-01
Chr02	irgsp1_rep	CDS	5353574	5353675	.	+	0	Parent=Os02t0195800-01
Chr02	irgsp1_rep	CDS	5353756	5353815	.	+	0	Parent=Os02t0195800-01
Chr02	irgsp1_rep	CDS	5353900	5354006	.	+	0	Parent=Os02t0195800-01
Chr02	irgsp1_rep	CDS	5354114	5354196	.	+	1	Parent=Os02t0195800-01
Chr02	irgsp1_rep	CDS	5354372	5354462	.	+	2	Parent=Os02t0195800-01
Chr02	irgsp1_rep	CDS	5354561	5354768	.	+	1	Parent=Os02t0195800-01
Chr02	irgsp1_rep	three_prime_UTR	5354769	5355145	.	+	.	Parent=Os02t0195800-01
Chr02	irgsp1_rep	mRNA	5355523	5355901	.	+	.	ID=Os02t0195900-00;Name=Os02t0195900-00;Locus_id=Os02g0195900;Note=Conserved hypothetical protein.;Transcript_evidence=EU959362 (DDBJ);ORF_evidence=NP_001046189.1 (RefSeq);TENOR=Os02t0195900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	5355523	5355873	.	+	0	Parent=Os02t0195900-00
Chr02	irgsp1_rep	three_prime_UTR	5355874	5355901	.	+	.	Parent=Os02t0195900-00
Chr02	irgsp1_rep	mRNA	5357310	5361623	.	+	.	ID=Os02t0196000-01;Name=Os02t0196000-01;Locus_id=Os02g0196000;Note=Zinc/iron permease family protein.;Transcript_evidence=AK068640 (DDBJ%2C Best hit);ORF_evidence=XP_002299235.1 (RefSeq);GO=Biological Process: metal ion transport (GO:0030001),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: metal ion transmembrane transporter activity (GO:0046873);InterPro=Zinc/iron permease (IPR003689);NIAS_FLcDNA=J013157C18;Expression=AK068640;TENOR=Os02t0196000-01;KEGG=Os02t0196000-01
Chr02	irgsp1_rep	five_prime_UTR	5357310	5357412	.	+	.	Parent=Os02t0196000-01
Chr02	irgsp1_rep	CDS	5357413	5357476	.	+	0	Parent=Os02t0196000-01
Chr02	irgsp1_rep	CDS	5358268	5358326	.	+	2	Parent=Os02t0196000-01
Chr02	irgsp1_rep	CDS	5358438	5358530	.	+	0	Parent=Os02t0196000-01
Chr02	irgsp1_rep	CDS	5358636	5358725	.	+	0	Parent=Os02t0196000-01
Chr02	irgsp1_rep	CDS	5358832	5358913	.	+	0	Parent=Os02t0196000-01
Chr02	irgsp1_rep	CDS	5359085	5359140	.	+	2	Parent=Os02t0196000-01
Chr02	irgsp1_rep	CDS	5359446	5359502	.	+	0	Parent=Os02t0196000-01
Chr02	irgsp1_rep	CDS	5359939	5359979	.	+	0	Parent=Os02t0196000-01
Chr02	irgsp1_rep	CDS	5360432	5360499	.	+	1	Parent=Os02t0196000-01
Chr02	irgsp1_rep	CDS	5360592	5360648	.	+	2	Parent=Os02t0196000-01
Chr02	irgsp1_rep	CDS	5360724	5360841	.	+	2	Parent=Os02t0196000-01
Chr02	irgsp1_rep	CDS	5361181	5361226	.	+	1	Parent=Os02t0196000-01
Chr02	irgsp1_rep	three_prime_UTR	5361227	5361623	.	+	.	Parent=Os02t0196000-01
Chr02	irgsp1_rep	mRNA	5364450	5366226	.	-	.	ID=Os02t0196100-01;Name=Os02t0196100-01;Locus_id=Os02g0196100;CGSNL Gene Symbol=AGP30;CGSNL Gene Name=ARABINOGALACTAN PROTEIN 30;Oryzabase Gene Symbol Synonym(s)=OsAGP30%2C DLN50%2C OsDLN50;Oryzabase Gene Name Synonym(s)=Arabinogalactan protein 30%2C DLN repressor 50%2C DLN motif protein 50;Note=Similar to T6J4.5 protein (WIP6 protein).;Transcript_evidence=AK108729 (DDBJ%2C Best hit);ORF_evidence=A6N8R9 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=002-150-D01;Oryzabase=11323;Expression=AK108729;TENOR=Os02t0196100-01;KEGG=Os02t0196100-01
Chr02	irgsp1_rep	five_prime_UTR	5366085	5366226	.	-	.	Parent=Os02t0196100-01
Chr02	irgsp1_rep	CDS	5365857	5366084	.	-	0	Parent=Os02t0196100-01
Chr02	irgsp1_rep	CDS	5364621	5365055	.	-	0	Parent=Os02t0196100-01
Chr02	irgsp1_rep	three_prime_UTR	5364450	5364620	.	-	.	Parent=Os02t0196100-01
Chr02	irgsp1_rep	mRNA	5373070	5380161	.	-	.	ID=Os02t0196300-01;Name=Os02t0196300-01;Locus_id=Os02g0196300;Note=Similar to Outer envelope protein of 80 kDa.;Transcript_evidence=AK066028 (DDBJ%2C Best hit);ORF_evidence=Q6H7M7 (UniProt);GO=Cellular Component: outer membrane (GO:0019867);InterPro=Bacterial surface antigen (D15) (IPR000184),Surface antigen variable number (IPR010827);NIAS_FLcDNA=J013047H11;TENOR=Os02t0196300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	5380055	5380161	.	-	0	Parent=Os02t0196300-01
Chr02	irgsp1_rep	CDS	5379533	5379821	.	-	1	Parent=Os02t0196300-01
Chr02	irgsp1_rep	CDS	5379335	5379428	.	-	0	Parent=Os02t0196300-01
Chr02	irgsp1_rep	CDS	5378745	5378827	.	-	2	Parent=Os02t0196300-01
Chr02	irgsp1_rep	CDS	5378177	5378274	.	-	0	Parent=Os02t0196300-01
Chr02	irgsp1_rep	CDS	5377993	5378062	.	-	1	Parent=Os02t0196300-01
Chr02	irgsp1_rep	CDS	5377315	5377408	.	-	0	Parent=Os02t0196300-01
Chr02	irgsp1_rep	CDS	5377145	5377226	.	-	2	Parent=Os02t0196300-01
Chr02	irgsp1_rep	CDS	5376906	5376941	.	-	1	Parent=Os02t0196300-01
Chr02	irgsp1_rep	CDS	5376439	5376592	.	-	1	Parent=Os02t0196300-01
Chr02	irgsp1_rep	CDS	5376201	5376344	.	-	0	Parent=Os02t0196300-01
Chr02	irgsp1_rep	CDS	5375163	5375233	.	-	0	Parent=Os02t0196300-01
Chr02	irgsp1_rep	CDS	5374955	5375033	.	-	1	Parent=Os02t0196300-01
Chr02	irgsp1_rep	CDS	5374755	5374870	.	-	0	Parent=Os02t0196300-01
Chr02	irgsp1_rep	CDS	5374473	5374620	.	-	1	Parent=Os02t0196300-01
Chr02	irgsp1_rep	CDS	5373912	5373981	.	-	0	Parent=Os02t0196300-01
Chr02	irgsp1_rep	CDS	5373449	5373603	.	-	2	Parent=Os02t0196300-01
Chr02	irgsp1_rep	three_prime_UTR	5373070	5373448	.	-	.	Parent=Os02t0196300-01
Chr02	irgsp1_rep	mRNA	5396347	5398973	.	-	.	ID=Os02t0196451-00;Name=Os02t0196451-00;Locus_id=Os02g0196451;Note=Non-protein coding transcript.;Transcript_evidence=EU954089 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0196451-00
Chr02	irgsp1_rep	exon	5398752	5398973	.	-	.	Parent=Os02t0196451-00
Chr02	irgsp1_rep	exon	5396347	5396415	.	-	.	Parent=Os02t0196451-00
Chr02	irgsp1_rep	mRNA	5404703	5410606	.	+	.	ID=Os02t0196600-01;Name=Os02t0196600-01;Locus_id=Os02g0196600;RAP-DB Gene Symbol Synonym(s)=HMA4%2C OsHMA4;RAP-DB Gene Name Synonym(s)=HEAVY METAL ATPASE 4%2C heavy metal P-Type ATPase 4;CGSNL Gene Symbol=HMA4;CGSNL Gene Name=HEAVY METAL ATPASE 4;Oryzabase Gene Symbol Synonym(s)=OsHMA7%2C osHMA4%2C HMA7%2C OsHMP12%2C HMP12;Oryzabase Gene Name Synonym(s)=heavy metal ATPase 7%2C heavy metal ATPase 4%2C heavy metal P-Type ATPase 4%2C Heavy metal-associated protein 12;Note=Heavy metal P1B-type ATPase%2C Cu-transporting ATPase%2C Control of Cu accumulation in rice grain;Transcript_evidence=AK100988,KU168832 (Lemont%2C japonica);ORF_evidence=Q6H7M3,A0A1B1ELV0 (Lemont%2C japonica);GO=Biological Process: cation transport (GO:0006812),Biological Process: metal ion transport (GO:0030001),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: copper ion binding (GO:0005507),Molecular Function: cation-transporting ATPase activity (GO:0019829),Molecular Function: metal ion binding (GO:0046872),Cellular Component: integral component of membrane (GO:0016021);InterPro=P-type ATPase (IPR001757),P-type ATPase%2C subfamily IB (IPR027256),Heavy metal-associated domain%2C HMA (IPR006121),Heavy metal-associated domain%2C copper ion-binding (IPR006122),P-type ATPase%2C  transmembrane domain (IPR023298),P-type ATPase%2C A  domain (IPR008250),HAD-like domain (IPR023214),P-type ATPase%2C cytoplasmic domain N (IPR023299),Heavy-metal-associated%2C conserved site (IPR017969),P-type ATPase%2C phosphorylation site (IPR018303);NIAS_FLcDNA=J023145H17;Manual Curation=June 26%2C 2017;Literature_PMID=27387148;Oryzabase=13010;Expression=AK100988;TENOR=Os02t0196600-01;KEGG=Os02t0196600-01 (EC:3.6.3.54);Subcellular location=vacuolar membrane (GO:0005774) [root]
Chr02	irgsp1_rep	five_prime_UTR	5404703	5404868	.	+	.	Parent=Os02t0196600-01
Chr02	irgsp1_rep	five_prime_UTR	5405548	5405549	.	+	.	Parent=Os02t0196600-01
Chr02	irgsp1_rep	CDS	5405550	5405810	.	+	0	Parent=Os02t0196600-01
Chr02	irgsp1_rep	CDS	5406654	5407399	.	+	0	Parent=Os02t0196600-01
Chr02	irgsp1_rep	CDS	5407575	5408046	.	+	1	Parent=Os02t0196600-01
Chr02	irgsp1_rep	CDS	5408129	5408296	.	+	0	Parent=Os02t0196600-01
Chr02	irgsp1_rep	CDS	5408802	5409056	.	+	0	Parent=Os02t0196600-01
Chr02	irgsp1_rep	CDS	5409165	5409287	.	+	0	Parent=Os02t0196600-01
Chr02	irgsp1_rep	CDS	5409395	5409880	.	+	0	Parent=Os02t0196600-01
Chr02	irgsp1_rep	CDS	5409976	5410401	.	+	0	Parent=Os02t0196600-01
Chr02	irgsp1_rep	three_prime_UTR	5410402	5410606	.	+	.	Parent=Os02t0196600-01
Chr02	irgsp1_rep	mRNA	5411327	5413843	.	+	.	ID=Os02t0196700-00;Name=Os02t0196700-00;Locus_id=Os02g0196700;Oryzabase Gene Symbol Synonym(s)=OsPGL6%2C PGL6;Oryzabase Gene Name Synonym(s)=Polygalacturonases-Like 6%2C PG-like 6;Note=Similar to Exopolygalacturonase.;Transcript_evidence=EU966972 (DDBJ);ORF_evidence=C0JA56 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Twin-arginine translocation pathway%2C signal sequence (IPR006311),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);Oryzabase=22283;TENOR=Os02t0196700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	5411327	5411951	.	+	0	Parent=Os02t0196700-00
Chr02	irgsp1_rep	CDS	5412476	5412783	.	+	2	Parent=Os02t0196700-00
Chr02	irgsp1_rep	CDS	5413283	5413843	.	+	0	Parent=Os02t0196700-00
Chr02	irgsp1_rep	mRNA	5411349	5413712	.	-	.	ID=Os02t0196750-00;Name=Os02t0196750-00;Locus_id=Os02g0196750;Note=Hypothetical protein.;Transcript_evidence=tplb0028j17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0196750-00
Chr02	irgsp1_rep	CDS	5413287	5413712	.	-	0	Parent=Os02t0196750-00
Chr02	irgsp1_rep	CDS	5412499	5412775	.	-	0	Parent=Os02t0196750-00
Chr02	irgsp1_rep	CDS	5411905	5411969	.	-	2	Parent=Os02t0196750-00
Chr02	irgsp1_rep	three_prime_UTR	5411349	5411904	.	-	.	Parent=Os02t0196750-00
Chr02	irgsp1_rep	mRNA	5415009	5418652	.	-	.	ID=Os02t0196800-01;Name=Os02t0196800-01;Locus_id=Os02g0196800;Note=Similar to Fumarylacetoacetase (Fragment).;Transcript_evidence=AK070521 (DDBJ%2C Best hit),AK105018 (DDBJ%2C Best hit);ORF_evidence=B6T3P4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: aromatic amino acid family metabolic process (GO:0009072),Molecular Function: catalytic activity (GO:0003824),Molecular Function: fumarylacetoacetase activity (GO:0004334);InterPro=Fumarylacetoacetase%2C C-terminal (IPR002529),Fumarylacetoacetase (IPR005959),Fumarylacetoacetase%2C C-terminal-related (IPR011234),Fumarylacetoacetase%2C N-terminal (IPR015377);NIAS_FLcDNA=J023055F19,001-009-D02;TENOR=Os02t0196800-01
Chr02	irgsp1_rep	five_prime_UTR	5418534	5418652	.	-	.	Parent=Os02t0196800-01
Chr02	irgsp1_rep	CDS	5418303	5418533	.	-	0	Parent=Os02t0196800-01
Chr02	irgsp1_rep	CDS	5418031	5418109	.	-	0	Parent=Os02t0196800-01
Chr02	irgsp1_rep	CDS	5417664	5417722	.	-	2	Parent=Os02t0196800-01
Chr02	irgsp1_rep	CDS	5417451	5417575	.	-	0	Parent=Os02t0196800-01
Chr02	irgsp1_rep	CDS	5417284	5417358	.	-	1	Parent=Os02t0196800-01
Chr02	irgsp1_rep	CDS	5416863	5416938	.	-	1	Parent=Os02t0196800-01
Chr02	irgsp1_rep	CDS	5416564	5416663	.	-	0	Parent=Os02t0196800-01
Chr02	irgsp1_rep	CDS	5416430	5416489	.	-	2	Parent=Os02t0196800-01
Chr02	irgsp1_rep	CDS	5416127	5416197	.	-	2	Parent=Os02t0196800-01
Chr02	irgsp1_rep	CDS	5415964	5416026	.	-	0	Parent=Os02t0196800-01
Chr02	irgsp1_rep	CDS	5415797	5415861	.	-	0	Parent=Os02t0196800-01
Chr02	irgsp1_rep	CDS	5415614	5415710	.	-	1	Parent=Os02t0196800-01
Chr02	irgsp1_rep	CDS	5415398	5415523	.	-	0	Parent=Os02t0196800-01
Chr02	irgsp1_rep	CDS	5415218	5415280	.	-	0	Parent=Os02t0196800-01
Chr02	irgsp1_rep	three_prime_UTR	5415009	5415217	.	-	.	Parent=Os02t0196800-01
Chr02	irgsp1_rep	mRNA	5414971	5417576	.	-	.	ID=Os02t0196800-02;Name=Os02t0196800-02;Locus_id=Os02g0196800;Note=Similar to Fumarylacetoacetase.;Transcript_evidence=AK099565 (DDBJ%2C Best hit);ORF_evidence=B6T3P4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: aromatic amino acid family metabolic process (GO:0009072),Molecular Function: catalytic activity (GO:0003824),Molecular Function: fumarylacetoacetase activity (GO:0004334);InterPro=Fumarylacetoacetase%2C C-terminal (IPR002529),Fumarylacetoacetase (IPR005959),Fumarylacetoacetase%2C C-terminal-related (IPR011234);NIAS_FLcDNA=J013034M07;Expression=AK099565;TENOR=Os02t0196800-02;KEGG=Os02t0196800-02 (EC:3.7.1.2)
Chr02	irgsp1_rep	five_prime_UTR	5417576	5417576	.	-	.	Parent=Os02t0196800-02
Chr02	irgsp1_rep	CDS	5417451	5417575	.	-	0	Parent=Os02t0196800-02
Chr02	irgsp1_rep	CDS	5417284	5417358	.	-	1	Parent=Os02t0196800-02
Chr02	irgsp1_rep	CDS	5416863	5416938	.	-	1	Parent=Os02t0196800-02
Chr02	irgsp1_rep	CDS	5416564	5416663	.	-	0	Parent=Os02t0196800-02
Chr02	irgsp1_rep	CDS	5416430	5416489	.	-	2	Parent=Os02t0196800-02
Chr02	irgsp1_rep	CDS	5416127	5416197	.	-	2	Parent=Os02t0196800-02
Chr02	irgsp1_rep	CDS	5415964	5416026	.	-	0	Parent=Os02t0196800-02
Chr02	irgsp1_rep	CDS	5415797	5415861	.	-	0	Parent=Os02t0196800-02
Chr02	irgsp1_rep	CDS	5415614	5415710	.	-	1	Parent=Os02t0196800-02
Chr02	irgsp1_rep	CDS	5415398	5415523	.	-	0	Parent=Os02t0196800-02
Chr02	irgsp1_rep	CDS	5415218	5415280	.	-	0	Parent=Os02t0196800-02
Chr02	irgsp1_rep	three_prime_UTR	5414971	5415217	.	-	.	Parent=Os02t0196800-02
Chr02	irgsp1_rep	mRNA	5418288	5418580	.	+	.	ID=Os02t0196850-00;Name=Os02t0196850-00;Locus_id=Os02g0196850;Note=Hypothetical gene.;Transcript_evidence=EU949043 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0196850-00
Chr02	irgsp1_rep	CDS	5418288	5418580	.	+	0	Parent=Os02t0196850-00
Chr02	irgsp1_rep	mRNA	5422168	5424364	.	-	.	ID=Os02t0196900-01;Name=Os02t0196900-01;Locus_id=Os02g0196900;Note=Similar to 3-oxoacyl-[acyl-carrier-protein] synthase%2C mitochondrial precursor (EC 2.3.1.41) (Beta-ketoacyl-ACP synthase) (mtKAS).;Transcript_evidence=AK063866 (DDBJ%2C Best hit);ORF_evidence=B9F3U9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824);InterPro=Beta-ketoacyl synthase (IPR000794),Beta-ketoacyl synthase%2C N-terminal (IPR014030),Beta-ketoacyl synthase%2C C-terminal (IPR014031),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);NIAS_FLcDNA=001-122-E04;Expression=AK063866;TENOR=Os02t0196900-01;KEGG=Os02t0196900-01 (EC:2.3.1.179%2C EC:2.3.1.41)
Chr02	irgsp1_rep	CDS	5424285	5424364	.	-	0	Parent=Os02t0196900-01
Chr02	irgsp1_rep	CDS	5423894	5423974	.	-	1	Parent=Os02t0196900-01
Chr02	irgsp1_rep	CDS	5423770	5423803	.	-	1	Parent=Os02t0196900-01
Chr02	irgsp1_rep	CDS	5423456	5423522	.	-	0	Parent=Os02t0196900-01
Chr02	irgsp1_rep	CDS	5423305	5423381	.	-	2	Parent=Os02t0196900-01
Chr02	irgsp1_rep	CDS	5423113	5423173	.	-	0	Parent=Os02t0196900-01
Chr02	irgsp1_rep	CDS	5422876	5422958	.	-	2	Parent=Os02t0196900-01
Chr02	irgsp1_rep	CDS	5422721	5422792	.	-	0	Parent=Os02t0196900-01
Chr02	irgsp1_rep	CDS	5422477	5422641	.	-	0	Parent=Os02t0196900-01
Chr02	irgsp1_rep	three_prime_UTR	5422168	5422476	.	-	.	Parent=Os02t0196900-01
Chr02	irgsp1_rep	mRNA	5442003	5447054	.	-	.	ID=Os02t0197125-00;Name=Os02t0197125-00;Locus_id=Os02g0197125;Note=Hypothetical protein.;Transcript_evidence=tplb0043m06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0197125-00
Chr02	irgsp1_rep	five_prime_UTR	5446719	5447054	.	-	.	Parent=Os02t0197125-00
Chr02	irgsp1_rep	five_prime_UTR	5446355	5446423	.	-	.	Parent=Os02t0197125-00
Chr02	irgsp1_rep	five_prime_UTR	5446132	5446163	.	-	.	Parent=Os02t0197125-00
Chr02	irgsp1_rep	CDS	5446108	5446131	.	-	0	Parent=Os02t0197125-00
Chr02	irgsp1_rep	CDS	5445736	5445955	.	-	0	Parent=Os02t0197125-00
Chr02	irgsp1_rep	CDS	5445178	5445250	.	-	2	Parent=Os02t0197125-00
Chr02	irgsp1_rep	CDS	5445086	5445092	.	-	1	Parent=Os02t0197125-00
Chr02	irgsp1_rep	three_prime_UTR	5444733	5445085	.	-	.	Parent=Os02t0197125-00
Chr02	irgsp1_rep	three_prime_UTR	5443674	5443814	.	-	.	Parent=Os02t0197125-00
Chr02	irgsp1_rep	three_prime_UTR	5443144	5443448	.	-	.	Parent=Os02t0197125-00
Chr02	irgsp1_rep	three_prime_UTR	5442003	5442468	.	-	.	Parent=Os02t0197125-00
Chr02	irgsp1_rep	mRNA	5442081	5447353	.	+	.	ID=Os02t0197200-01;Name=Os02t0197200-01;Locus_id=Os02g0197200;CGSNL Gene Symbol=MLO_;CGSNL Gene Name=POWDERY-MILDEW-RESISTANCE GENE O_;Oryzabase Gene Symbol Synonym(s)=OsMLO8%2C MLO8;Oryzabase Gene Name Synonym(s)=powdery-MiLdew-resistance gene O8%2C Mildew resistance Locus O-8;Note=Mlo-related protein family protein.;Transcript_evidence=AK066134 (DDBJ%2C Best hit);ORF_evidence=E2RZR8 (UniProt);GO=Biological Process: cell death (GO:0008219),Cellular Component: integral to membrane (GO:0016021);InterPro=Mlo-related protein (IPR004326);NIAS_FLcDNA=J013052N01;Oryzabase=9191;Expression=AK066134;TENOR=Os02t0197200-01;KEGG=Os02t0197200-01
Chr02	irgsp1_rep	five_prime_UTR	5442081	5442121	.	+	.	Parent=Os02t0197200-01
Chr02	irgsp1_rep	CDS	5442122	5442248	.	+	0	Parent=Os02t0197200-01
Chr02	irgsp1_rep	CDS	5442976	5443035	.	+	2	Parent=Os02t0197200-01
Chr02	irgsp1_rep	CDS	5443303	5443463	.	+	2	Parent=Os02t0197200-01
Chr02	irgsp1_rep	CDS	5443692	5443808	.	+	0	Parent=Os02t0197200-01
Chr02	irgsp1_rep	CDS	5443888	5443989	.	+	0	Parent=Os02t0197200-01
Chr02	irgsp1_rep	CDS	5444834	5444908	.	+	0	Parent=Os02t0197200-01
Chr02	irgsp1_rep	CDS	5444996	5445084	.	+	0	Parent=Os02t0197200-01
Chr02	irgsp1_rep	CDS	5445171	5445220	.	+	1	Parent=Os02t0197200-01
Chr02	irgsp1_rep	CDS	5445601	5445641	.	+	2	Parent=Os02t0197200-01
Chr02	irgsp1_rep	CDS	5445744	5445953	.	+	0	Parent=Os02t0197200-01
Chr02	irgsp1_rep	CDS	5446103	5446170	.	+	0	Parent=Os02t0197200-01
Chr02	irgsp1_rep	CDS	5446363	5446394	.	+	1	Parent=Os02t0197200-01
Chr02	irgsp1_rep	CDS	5447053	5447081	.	+	2	Parent=Os02t0197200-01
Chr02	irgsp1_rep	three_prime_UTR	5447082	5447353	.	+	.	Parent=Os02t0197200-01
Chr02	irgsp1_rep	mRNA	5451819	5453159	.	-	.	ID=Os02t0197300-00;Name=Os02t0197300-00;Locus_id=Os02g0197300;CGSNL Gene Symbol=GRAS7;CGSNL Gene Name=GRAS PROTEIN 7;Oryzabase Gene Symbol Synonym(s)=OsGRAS-7%2C OsGRAS7%2C GRAS-7;Oryzabase Gene Name Synonym(s)=GRAS protein 7;Note=Similar to Monoculm1.;Transcript_evidence=BT083778 (DDBJ);ORF_evidence=C0JAC1 (UniProt);InterPro=Transcription factor GRAS (IPR005202);Oryzabase=22783;TENOR=Os02t0197300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	5451819	5453159	.	-	0	Parent=Os02t0197300-00
Chr02	irgsp1_rep	mRNA	5463812	5464418	.	-	.	ID=Os02t0197400-01;Name=Os02t0197400-01;Locus_id=Os02g0197400;Note=Similar to HrpN-interacting protein from Malus.;Transcript_evidence=AK242488 (DDBJ%2C Best hit);ORF_evidence=A8HJR4 (UniProt);NIAS_FLcDNA=J080306J10;TENOR=Os02t0197400-01;KEGG=Os02t0197400-01
Chr02	irgsp1_rep	five_prime_UTR	5464325	5464418	.	-	.	Parent=Os02t0197400-01
Chr02	irgsp1_rep	CDS	5464243	5464324	.	-	0	Parent=Os02t0197400-01
Chr02	irgsp1_rep	CDS	5464034	5464137	.	-	2	Parent=Os02t0197400-01
Chr02	irgsp1_rep	three_prime_UTR	5463812	5464033	.	-	.	Parent=Os02t0197400-01
Chr02	irgsp1_rep	mRNA	5465074	5468118	.	-	.	ID=Os02t0197500-01;Name=Os02t0197500-01;Locus_id=Os02g0197500;Note=Regulator of Chromosome condensation%2C RCC1 domain containing protein.;Transcript_evidence=AK105298 (DDBJ%2C Best hit);ORF_evidence=A2X217 (UniProt);InterPro=Regulator of Chromosome condensation%2C RCC1 (IPR000408),Regulator of Chromosome condensation/beta-lactamase-inhibitor protein II (IPR009091);NIAS_FLcDNA=001-116-H04;Expression=AK105298;TENOR=Os02t0197500-01;KEGG=Os02t0197500-01
Chr02	irgsp1_rep	five_prime_UTR	5468117	5468118	.	-	.	Parent=Os02t0197500-01
Chr02	irgsp1_rep	CDS	5467797	5468116	.	-	0	Parent=Os02t0197500-01
Chr02	irgsp1_rep	CDS	5466827	5467094	.	-	1	Parent=Os02t0197500-01
Chr02	irgsp1_rep	three_prime_UTR	5466782	5466826	.	-	.	Parent=Os02t0197500-01
Chr02	irgsp1_rep	three_prime_UTR	5465074	5465709	.	-	.	Parent=Os02t0197500-01
Chr02	irgsp1_rep	mRNA	5468648	5470490	.	-	.	ID=Os02t0197600-01;Name=Os02t0197600-01;Locus_id=Os02g0197600;CGSNL Gene Symbol=LHCA3;CGSNL Gene Name=LIGHT-HARVESTING COMPLEX SUBUNIT A3;Oryzabase Gene Symbol Synonym(s)=OsLhca3%2C Lhca3;Oryzabase Gene Name Synonym(s)=PSI type III chlorophyll a/b-binding protein%2C light-harvesting complex subunit a3;Note=Chlorophyll a/b-binding protein type III (Fragment).;Transcript_evidence=AK106085 (DDBJ%2C Best hit);ORF_evidence=B6SUC4 (UniProt);GO=Biological Process: photosynthesis%2C light harvesting (GO:0009765),Cellular Component: membrane (GO:0016020);InterPro=Chlorophyll A-B binding protein%2C plant (IPR001344),Chlorophyll A-B binding protein (IPR022796),Chlorophyll a/b binding protein domain (IPR023329);NIAS_FLcDNA=001-207-B02;Oryzabase=9606;TENOR=Os02t0197600-01
Chr02	irgsp1_rep	five_prime_UTR	5470354	5470490	.	-	.	Parent=Os02t0197600-01
Chr02	irgsp1_rep	CDS	5470225	5470353	.	-	0	Parent=Os02t0197600-01
Chr02	irgsp1_rep	CDS	5470066	5470127	.	-	0	Parent=Os02t0197600-01
Chr02	irgsp1_rep	CDS	5468899	5469517	.	-	1	Parent=Os02t0197600-01
Chr02	irgsp1_rep	three_prime_UTR	5468648	5468898	.	-	.	Parent=Os02t0197600-01
Chr02	irgsp1_rep	mRNA	5468648	5470436	.	-	.	ID=Os02t0197600-02;Name=Os02t0197600-02;Locus_id=Os02g0197600;CGSNL Gene Symbol=LHCA3;CGSNL Gene Name=LIGHT-HARVESTING COMPLEX SUBUNIT A3;Oryzabase Gene Symbol Synonym(s)=OsLhca3%2C Lhca3;Oryzabase Gene Name Synonym(s)=PSI type III chlorophyll a/b-binding protein%2C light-harvesting complex subunit a3;Note=Similar to Chlorophyll a-b binding protein 8.;Transcript_evidence=AK068102 (DDBJ%2C Best hit);ORF_evidence=B6SUC4 (UniProt);GO=Biological Process: photosynthesis%2C light harvesting (GO:0009765),Cellular Component: membrane (GO:0016020);InterPro=Chlorophyll A-B binding protein%2C plant (IPR001344),Chlorophyll A-B binding protein (IPR022796),Chlorophyll a/b binding protein domain (IPR023329);NIAS_FLcDNA=J013130I24;Oryzabase=9606;TENOR=Os02t0197600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	5470354	5470436	.	-	.	Parent=Os02t0197600-02
Chr02	irgsp1_rep	CDS	5470225	5470353	.	-	0	Parent=Os02t0197600-02
Chr02	irgsp1_rep	CDS	5470066	5470127	.	-	0	Parent=Os02t0197600-02
Chr02	irgsp1_rep	CDS	5469341	5469517	.	-	1	Parent=Os02t0197600-02
Chr02	irgsp1_rep	CDS	5469066	5469213	.	-	1	Parent=Os02t0197600-02
Chr02	irgsp1_rep	three_prime_UTR	5468648	5469065	.	-	.	Parent=Os02t0197600-02
Chr02	irgsp1_rep	mRNA	5468648	5470460	.	-	.	ID=Os02t0197600-03;Name=Os02t0197600-03;Locus_id=Os02g0197600;CGSNL Gene Symbol=LHCA3;CGSNL Gene Name=LIGHT-HARVESTING COMPLEX SUBUNIT A3;Oryzabase Gene Symbol Synonym(s)=OsLhca3%2C Lhca3;Oryzabase Gene Name Synonym(s)=PSI type III chlorophyll a/b-binding protein%2C light-harvesting complex subunit a3;Note=Chlorophyll a/b-binding protein type III (Fragment).;Transcript_evidence=AK060970 (DDBJ%2C Best hit),AK060143 (DDBJ%2C Best hit),AK104096 (DDBJ%2C Best hit),AK104215 (DDBJ%2C Best hit),AK104348 (DDBJ%2C Best hit),AK104385 (DDBJ%2C Best hit),AK104392 (DDBJ%2C Best hit),AK104446 (DDBJ%2C Best hit),AK104458 (DDBJ%2C Best hit),AK104469 (DDBJ%2C Best hit),AK104522 (DDBJ%2C Best hit),AK104535 (DDBJ%2C Best hit),AK104557 (DDBJ%2C Best hit),AK104636 (DDBJ%2C Best hit),AK104646 (DDBJ%2C Best hit),AK104734 (DDBJ%2C Best hit),AK109398 (DDBJ%2C Best hit),AK119554 (DDBJ%2C Best hit);ORF_evidence=B6SUC4 (UniProt);GO=Biological Process: photosynthesis%2C light harvesting (GO:0009765),Cellular Component: membrane (GO:0016020);InterPro=Chlorophyll A-B binding protein%2C plant (IPR001344),Chlorophyll A-B binding protein (IPR022796),Chlorophyll a/b binding protein domain (IPR023329);NIAS_FLcDNA=006-202-D07,006-310-A02,006-201-B04,006-305-H02,001-034-F11,006-201-E04,006-201-H10,006-211-B11,006-301-B05,006-301-D06,006-303-E10,006-304-E04,006-305-G04,006-310-D09,006-310-H01,001-038-C11,006-301-A11,001-208-E06;Oryzabase=9606;Expression=AK060143;TENOR=Os02t0197600-03;KEGG=Os02t0197600-03;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	5470354	5470460	.	-	.	Parent=Os02t0197600-03
Chr02	irgsp1_rep	CDS	5470225	5470353	.	-	0	Parent=Os02t0197600-03
Chr02	irgsp1_rep	CDS	5470066	5470127	.	-	0	Parent=Os02t0197600-03
Chr02	irgsp1_rep	CDS	5468899	5469517	.	-	1	Parent=Os02t0197600-03
Chr02	irgsp1_rep	three_prime_UTR	5468648	5468898	.	-	.	Parent=Os02t0197600-03
Chr02	irgsp1_rep	mRNA	5470929	5475134	.	-	.	ID=Os02t0197700-01;Name=Os02t0197700-01;Locus_id=Os02g0197700;Note=Di-trans-poly-cis-decaprenylcistransferase-like domain containing protein.;Transcript_evidence=AK065498 (DDBJ%2C Best hit);ORF_evidence=B9F3V0 (UniProt);GO=Molecular Function: transferase activity%2C transferring alkyl or aryl (other than methyl) groups (GO:0016765);InterPro=Di-trans-poly-cis-decaprenylcistransferase-like (IPR001441);NIAS_FLcDNA=J013025C03;TENOR=Os02t0197700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	5474887	5475134	.	-	.	Parent=Os02t0197700-01
Chr02	irgsp1_rep	five_prime_UTR	5474022	5474027	.	-	.	Parent=Os02t0197700-01
Chr02	irgsp1_rep	CDS	5473941	5474021	.	-	0	Parent=Os02t0197700-01
Chr02	irgsp1_rep	CDS	5473345	5473633	.	-	0	Parent=Os02t0197700-01
Chr02	irgsp1_rep	CDS	5472782	5472849	.	-	2	Parent=Os02t0197700-01
Chr02	irgsp1_rep	CDS	5472460	5472652	.	-	0	Parent=Os02t0197700-01
Chr02	irgsp1_rep	CDS	5472235	5472331	.	-	2	Parent=Os02t0197700-01
Chr02	irgsp1_rep	CDS	5471953	5472035	.	-	1	Parent=Os02t0197700-01
Chr02	irgsp1_rep	CDS	5471302	5471309	.	-	2	Parent=Os02t0197700-01
Chr02	irgsp1_rep	three_prime_UTR	5470929	5471301	.	-	.	Parent=Os02t0197700-01
Chr02	irgsp1_rep	mRNA	5477110	5477442	.	-	.	ID=Os02t0197750-00;Name=Os02t0197750-00;Locus_id=Os02g0197750;Note=B3 domain-containing protein LOC_Os02g10420.;Transcript_evidence=A3A463 (UniProt);ORF_evidence=A3A463 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);TENOR=Os02t0197750-00
Chr02	irgsp1_rep	CDS	5477110	5477442	.	-	0	Parent=Os02t0197750-00
Chr02	irgsp1_rep	mRNA	5478759	5480881	.	-	.	ID=Os02t0197800-01;Name=Os02t0197800-01;Locus_id=Os02g0197800;Note=Protein of unknown function DUF971 family protein.;Transcript_evidence=AK061372 (DDBJ%2C Best hit);ORF_evidence=A2X221 (UniProt);InterPro=Domain of unknown function%2C DUF971 (IPR010376);NIAS_FLcDNA=006-304-E12;Expression=AK061372;TENOR=Os02t0197800-01;KEGG=Os02t0197800-01
Chr02	irgsp1_rep	five_prime_UTR	5480657	5480881	.	-	.	Parent=Os02t0197800-01
Chr02	irgsp1_rep	CDS	5480552	5480656	.	-	0	Parent=Os02t0197800-01
Chr02	irgsp1_rep	CDS	5479934	5480041	.	-	0	Parent=Os02t0197800-01
Chr02	irgsp1_rep	CDS	5479518	5479582	.	-	0	Parent=Os02t0197800-01
Chr02	irgsp1_rep	CDS	5479188	5479335	.	-	1	Parent=Os02t0197800-01
Chr02	irgsp1_rep	three_prime_UTR	5478759	5479187	.	-	.	Parent=Os02t0197800-01
Chr02	irgsp1_rep	mRNA	5482742	5489107	.	+	.	ID=Os02t0197900-01;Name=Os02t0197900-01;Locus_id=Os02g0197900;Oryzabase Gene Symbol Synonym(s)=OsSTA53;Note=Conserved hypothetical protein.;Transcript_evidence=AK102759 (DDBJ%2C Best hit);ORF_evidence=B8ADS4 (UniProt);NIAS_FLcDNA=J033107C18;Oryzabase=19356;TENOR=Os02t0197900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	5482742	5483110	.	+	.	Parent=Os02t0197900-01
Chr02	irgsp1_rep	CDS	5483111	5483151	.	+	0	Parent=Os02t0197900-01
Chr02	irgsp1_rep	CDS	5484478	5484557	.	+	1	Parent=Os02t0197900-01
Chr02	irgsp1_rep	CDS	5484668	5484773	.	+	2	Parent=Os02t0197900-01
Chr02	irgsp1_rep	CDS	5485012	5485138	.	+	1	Parent=Os02t0197900-01
Chr02	irgsp1_rep	CDS	5485273	5485306	.	+	0	Parent=Os02t0197900-01
Chr02	irgsp1_rep	CDS	5485597	5485673	.	+	2	Parent=Os02t0197900-01
Chr02	irgsp1_rep	three_prime_UTR	5485674	5485720	.	+	.	Parent=Os02t0197900-01
Chr02	irgsp1_rep	three_prime_UTR	5486523	5486603	.	+	.	Parent=Os02t0197900-01
Chr02	irgsp1_rep	three_prime_UTR	5487177	5487275	.	+	.	Parent=Os02t0197900-01
Chr02	irgsp1_rep	three_prime_UTR	5487416	5487583	.	+	.	Parent=Os02t0197900-01
Chr02	irgsp1_rep	three_prime_UTR	5487688	5487775	.	+	.	Parent=Os02t0197900-01
Chr02	irgsp1_rep	three_prime_UTR	5487860	5487930	.	+	.	Parent=Os02t0197900-01
Chr02	irgsp1_rep	three_prime_UTR	5488000	5488068	.	+	.	Parent=Os02t0197900-01
Chr02	irgsp1_rep	three_prime_UTR	5488368	5488499	.	+	.	Parent=Os02t0197900-01
Chr02	irgsp1_rep	three_prime_UTR	5488740	5489107	.	+	.	Parent=Os02t0197900-01
Chr02	irgsp1_rep	mRNA	5485064	5489299	.	+	.	ID=Os02t0197900-02;Name=Os02t0197900-02;Locus_id=Os02g0197900;Oryzabase Gene Symbol Synonym(s)=OsSTA53;Note=Conserved hypothetical protein.;Transcript_evidence=AK059082 (DDBJ%2C Best hit);ORF_evidence=A3A465 (UniProt);NIAS_FLcDNA=001-022-A12;Oryzabase=19356;TENOR=Os02t0197900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	5485064	5485138	.	+	0	Parent=Os02t0197900-02
Chr02	irgsp1_rep	CDS	5485212	5485306	.	+	0	Parent=Os02t0197900-02
Chr02	irgsp1_rep	CDS	5485597	5485720	.	+	1	Parent=Os02t0197900-02
Chr02	irgsp1_rep	CDS	5486523	5486603	.	+	0	Parent=Os02t0197900-02
Chr02	irgsp1_rep	CDS	5487177	5487275	.	+	0	Parent=Os02t0197900-02
Chr02	irgsp1_rep	CDS	5487416	5487583	.	+	0	Parent=Os02t0197900-02
Chr02	irgsp1_rep	CDS	5487688	5487775	.	+	0	Parent=Os02t0197900-02
Chr02	irgsp1_rep	CDS	5487860	5487930	.	+	2	Parent=Os02t0197900-02
Chr02	irgsp1_rep	CDS	5488000	5488068	.	+	0	Parent=Os02t0197900-02
Chr02	irgsp1_rep	CDS	5488368	5488499	.	+	0	Parent=Os02t0197900-02
Chr02	irgsp1_rep	CDS	5488740	5488946	.	+	0	Parent=Os02t0197900-02
Chr02	irgsp1_rep	three_prime_UTR	5488947	5489299	.	+	.	Parent=Os02t0197900-02
Chr02	irgsp1_rep	mRNA	5482835	5488933	.	-	.	ID=Os02t0197950-00;Name=Os02t0197950-00;Locus_id=Os02g0197950;Note=Hypothetical protein.;Transcript_evidence=tplb0061n07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0197950-00
Chr02	irgsp1_rep	five_prime_UTR	5488748	5488933	.	-	.	Parent=Os02t0197950-00
Chr02	irgsp1_rep	five_prime_UTR	5488302	5488510	.	-	.	Parent=Os02t0197950-00
Chr02	irgsp1_rep	five_prime_UTR	5487869	5487926	.	-	.	Parent=Os02t0197950-00
Chr02	irgsp1_rep	five_prime_UTR	5487660	5487790	.	-	.	Parent=Os02t0197950-00
Chr02	irgsp1_rep	five_prime_UTR	5487415	5487554	.	-	.	Parent=Os02t0197950-00
Chr02	irgsp1_rep	five_prime_UTR	5487175	5487274	.	-	.	Parent=Os02t0197950-00
Chr02	irgsp1_rep	five_prime_UTR	5486522	5486608	.	-	.	Parent=Os02t0197950-00
Chr02	irgsp1_rep	five_prime_UTR	5485602	5485719	.	-	.	Parent=Os02t0197950-00
Chr02	irgsp1_rep	five_prime_UTR	5485210	5485310	.	-	.	Parent=Os02t0197950-00
Chr02	irgsp1_rep	five_prime_UTR	5485010	5485136	.	-	.	Parent=Os02t0197950-00
Chr02	irgsp1_rep	five_prime_UTR	5484667	5484771	.	-	.	Parent=Os02t0197950-00
Chr02	irgsp1_rep	five_prime_UTR	5484405	5484552	.	-	.	Parent=Os02t0197950-00
Chr02	irgsp1_rep	five_prime_UTR	5483162	5483170	.	-	.	Parent=Os02t0197950-00
Chr02	irgsp1_rep	CDS	5482835	5483161	.	-	0	Parent=Os02t0197950-00
Chr02	irgsp1_rep	mRNA	5490496	5491873	.	-	.	ID=Os02t0198000-01;Name=Os02t0198000-01;Locus_id=Os02g0198000;Note=Protein of unknown function DUF1677%2C Oryza sativa family protein.;Transcript_evidence=AK067695 (DDBJ%2C Best hit);ORF_evidence=A2X223 (UniProt);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);NIAS_FLcDNA=J013118O05;Expression=AK067695;TENOR=Os02t0198000-01;KEGG=Os02t0198000-01
Chr02	irgsp1_rep	five_prime_UTR	5491814	5491873	.	-	.	Parent=Os02t0198000-01
Chr02	irgsp1_rep	CDS	5490671	5491813	.	-	0	Parent=Os02t0198000-01
Chr02	irgsp1_rep	three_prime_UTR	5490496	5490670	.	-	.	Parent=Os02t0198000-01
Chr02	irgsp1_rep	mRNA	5501167	5504378	.	+	.	ID=Os02t0198200-01;Name=Os02t0198200-01;Locus_id=Os02g0198200;Note=EF-Hand type domain containing protein.;Transcript_evidence=AK058544 (DDBJ%2C Best hit);ORF_evidence=B4FE15 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249);NIAS_FLcDNA=001-017-B12;Expression=AK058544;TENOR=Os02t0198200-01;KEGG=Os02t0198200-01
Chr02	irgsp1_rep	five_prime_UTR	5501167	5501315	.	+	.	Parent=Os02t0198200-01
Chr02	irgsp1_rep	five_prime_UTR	5502128	5502173	.	+	.	Parent=Os02t0198200-01
Chr02	irgsp1_rep	CDS	5502174	5502369	.	+	0	Parent=Os02t0198200-01
Chr02	irgsp1_rep	CDS	5502880	5503079	.	+	2	Parent=Os02t0198200-01
Chr02	irgsp1_rep	CDS	5503653	5503827	.	+	0	Parent=Os02t0198200-01
Chr02	irgsp1_rep	CDS	5503923	5504038	.	+	2	Parent=Os02t0198200-01
Chr02	irgsp1_rep	three_prime_UTR	5504039	5504378	.	+	.	Parent=Os02t0198200-01
Chr02	irgsp1_rep	mRNA	5505067	5508419	.	+	.	ID=Os02t0198300-01;Name=Os02t0198300-01;Locus_id=Os02g0198300;Note=ARF GTPase-activating protein GIT2 (G protein-coupled receptor kinase- interactor 2) (GRK-interacting protein 2) (Cool-interacting tyrosine- phosphorylated protein 2) (CAT2) (CAT-2). Splice isoform 2.;Transcript_evidence=AK068692 (DDBJ%2C Best hit);ORF_evidence=B6THV1 (UniProt);GO=Biological Process: regulation of ARF GTPase activity (GO:0032312),Molecular Function: protein binding (GO:0005515),Molecular Function: ARF GTPase activator activity (GO:0008060),Molecular Function: zinc ion binding (GO:0008270);InterPro=C2 calcium-dependent membrane targeting (IPR000008),Arf GTPase activating protein (IPR001164),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=J013159P19;Expression=AK068692;TENOR=Os02t0198300-01;KEGG=Os02t0198300-01
Chr02	irgsp1_rep	five_prime_UTR	5505067	5505198	.	+	.	Parent=Os02t0198300-01
Chr02	irgsp1_rep	five_prime_UTR	5505316	5505654	.	+	.	Parent=Os02t0198300-01
Chr02	irgsp1_rep	five_prime_UTR	5505965	5505982	.	+	.	Parent=Os02t0198300-01
Chr02	irgsp1_rep	CDS	5505983	5506049	.	+	0	Parent=Os02t0198300-01
Chr02	irgsp1_rep	CDS	5506449	5506519	.	+	2	Parent=Os02t0198300-01
Chr02	irgsp1_rep	CDS	5506694	5506857	.	+	0	Parent=Os02t0198300-01
Chr02	irgsp1_rep	CDS	5507059	5507176	.	+	1	Parent=Os02t0198300-01
Chr02	irgsp1_rep	CDS	5507283	5507399	.	+	0	Parent=Os02t0198300-01
Chr02	irgsp1_rep	CDS	5507543	5507638	.	+	0	Parent=Os02t0198300-01
Chr02	irgsp1_rep	CDS	5507905	5508186	.	+	0	Parent=Os02t0198300-01
Chr02	irgsp1_rep	three_prime_UTR	5508187	5508419	.	+	.	Parent=Os02t0198300-01
Chr02	irgsp1_rep	mRNA	5505087	5508425	.	+	.	ID=Os02t0198300-02;Name=Os02t0198300-02;Locus_id=Os02g0198300;Note=Arf GTPase activating protein family protein.;Transcript_evidence=AK060556 (DDBJ%2C Best hit);ORF_evidence=C0JA35 (UniProt);GO=Biological Process: regulation of ARF GTPase activity (GO:0032312),Molecular Function: protein binding (GO:0005515),Molecular Function: ARF GTPase activator activity (GO:0008060),Molecular Function: zinc ion binding (GO:0008270);InterPro=C2 calcium-dependent membrane targeting (IPR000008),Arf GTPase activating protein (IPR001164),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=001-022-D08;Expression=AK060556;TENOR=Os02t0198300-02;KEGG=Os02t0198300-02
Chr02	irgsp1_rep	five_prime_UTR	5505087	5505198	.	+	.	Parent=Os02t0198300-02
Chr02	irgsp1_rep	five_prime_UTR	5505316	5505629	.	+	.	Parent=Os02t0198300-02
Chr02	irgsp1_rep	CDS	5505630	5505654	.	+	0	Parent=Os02t0198300-02
Chr02	irgsp1_rep	CDS	5505965	5506049	.	+	2	Parent=Os02t0198300-02
Chr02	irgsp1_rep	CDS	5506444	5506519	.	+	1	Parent=Os02t0198300-02
Chr02	irgsp1_rep	CDS	5506694	5506857	.	+	0	Parent=Os02t0198300-02
Chr02	irgsp1_rep	CDS	5507059	5507176	.	+	1	Parent=Os02t0198300-02
Chr02	irgsp1_rep	CDS	5507283	5507399	.	+	0	Parent=Os02t0198300-02
Chr02	irgsp1_rep	CDS	5507543	5507638	.	+	0	Parent=Os02t0198300-02
Chr02	irgsp1_rep	CDS	5507905	5508186	.	+	0	Parent=Os02t0198300-02
Chr02	irgsp1_rep	three_prime_UTR	5508187	5508425	.	+	.	Parent=Os02t0198300-02
Chr02	irgsp1_rep	mRNA	5506420	5508685	.	-	.	ID=Os02t0198333-00;Name=Os02t0198333-00;Locus_id=Os02g0198333;Note=Hypothetical gene.;Transcript_evidence=BT069560 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0198333-00;KEGG=Os02t0198333-00
Chr02	irgsp1_rep	five_prime_UTR	5508183	5508685	.	-	.	Parent=Os02t0198333-00
Chr02	irgsp1_rep	CDS	5507965	5508182	.	-	0	Parent=Os02t0198333-00
Chr02	irgsp1_rep	CDS	5507657	5507678	.	-	1	Parent=Os02t0198333-00
Chr02	irgsp1_rep	three_prime_UTR	5507554	5507656	.	-	.	Parent=Os02t0198333-00
Chr02	irgsp1_rep	three_prime_UTR	5506420	5506523	.	-	.	Parent=Os02t0198333-00
Chr02	irgsp1_rep	mRNA	5508961	5509384	.	-	.	ID=Os02t0198366-00;Name=Os02t0198366-00;Locus_id=Os02g0198366;Note=Hypothetical protein.;Transcript_evidence=FP093121 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0198366-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	5509254	5509384	.	-	.	Parent=Os02t0198366-00
Chr02	irgsp1_rep	CDS	5508961	5509253	.	-	0	Parent=Os02t0198366-00
Chr02	irgsp1_rep	mRNA	5511434	5517919	.	-	.	ID=Os02t0198400-00;Name=Os02t0198400-00;Locus_id=Os02g0198400;Note=Similar to predicted protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8ADS6 (UniProt);TENOR=Os02t0198400-00;KEGG=Os02t0198400-00
Chr02	irgsp1_rep	CDS	5517287	5517919	.	-	0	Parent=Os02t0198400-00
Chr02	irgsp1_rep	CDS	5517036	5517132	.	-	0	Parent=Os02t0198400-00
Chr02	irgsp1_rep	CDS	5516844	5516934	.	-	2	Parent=Os02t0198400-00
Chr02	irgsp1_rep	CDS	5516661	5516741	.	-	1	Parent=Os02t0198400-00
Chr02	irgsp1_rep	CDS	5516433	5516567	.	-	1	Parent=Os02t0198400-00
Chr02	irgsp1_rep	CDS	5516211	5516332	.	-	1	Parent=Os02t0198400-00
Chr02	irgsp1_rep	CDS	5515880	5516044	.	-	2	Parent=Os02t0198400-00
Chr02	irgsp1_rep	CDS	5515697	5515802	.	-	2	Parent=Os02t0198400-00
Chr02	irgsp1_rep	CDS	5515484	5515589	.	-	1	Parent=Os02t0198400-00
Chr02	irgsp1_rep	CDS	5515023	5515195	.	-	0	Parent=Os02t0198400-00
Chr02	irgsp1_rep	CDS	5514818	5514935	.	-	1	Parent=Os02t0198400-00
Chr02	irgsp1_rep	CDS	5514410	5514634	.	-	0	Parent=Os02t0198400-00
Chr02	irgsp1_rep	CDS	5513644	5513834	.	-	0	Parent=Os02t0198400-00
Chr02	irgsp1_rep	CDS	5513387	5513554	.	-	1	Parent=Os02t0198400-00
Chr02	irgsp1_rep	CDS	5513144	5513249	.	-	1	Parent=Os02t0198400-00
Chr02	irgsp1_rep	CDS	5512690	5512848	.	-	0	Parent=Os02t0198400-00
Chr02	irgsp1_rep	CDS	5512408	5512611	.	-	0	Parent=Os02t0198400-00
Chr02	irgsp1_rep	CDS	5512106	5512300	.	-	0	Parent=Os02t0198400-00
Chr02	irgsp1_rep	CDS	5511952	5512023	.	-	0	Parent=Os02t0198400-00
Chr02	irgsp1_rep	CDS	5511434	5511547	.	-	0	Parent=Os02t0198400-00
Chr02	irgsp1_rep	mRNA	5519299	5519921	.	-	.	ID=Os02t0198500-01;Name=Os02t0198500-01;Locus_id=Os02g0198500;Note=Conserved hypothetical protein.;Transcript_evidence=AK062474 (DDBJ%2C Best hit);ORF_evidence=B8ADS7 (UniProt);NIAS_FLcDNA=001-103-F04;Expression=AK062474;TENOR=Os02t0198500-01;KEGG=Os02t0198500-01
Chr02	irgsp1_rep	five_prime_UTR	5519866	5519921	.	-	.	Parent=Os02t0198500-01
Chr02	irgsp1_rep	CDS	5519702	5519865	.	-	0	Parent=Os02t0198500-01
Chr02	irgsp1_rep	CDS	5519487	5519514	.	-	1	Parent=Os02t0198500-01
Chr02	irgsp1_rep	three_prime_UTR	5519299	5519486	.	-	.	Parent=Os02t0198500-01
Chr02	irgsp1_rep	mRNA	5519305	5519921	.	-	.	ID=Os02t0198500-02;Name=Os02t0198500-02;Locus_id=Os02g0198500;Note=Hypothetical conserved gene.;Transcript_evidence=AK063694 (DDBJ%2C Best hit);ORF_evidence=B8ADS7 (UniProt);NIAS_FLcDNA=001-119-F12;Expression=AK063694;TENOR=Os02t0198500-02;KEGG=Os02t0198500-02
Chr02	irgsp1_rep	five_prime_UTR	5519866	5519921	.	-	.	Parent=Os02t0198500-02
Chr02	irgsp1_rep	CDS	5519608	5519865	.	-	0	Parent=Os02t0198500-02
Chr02	irgsp1_rep	three_prime_UTR	5519305	5519607	.	-	.	Parent=Os02t0198500-02
Chr02	irgsp1_rep	mRNA	5524023	5528685	.	+	.	ID=Os02t0198600-01;Name=Os02t0198600-01;Locus_id=Os02g0198600;Note=Similar to DNA-damage inducible protein DDI1-like.;Transcript_evidence=AK067974 (DDBJ%2C Best hit);ORF_evidence=NP_566451.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190),Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal (IPR000449),Ubiquitin (IPR000626),UBA-like (IPR009060),Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (IPR015940),Peptidase aspartic%2C eukaryotic predicted (IPR019103),Ubiquitin supergroup (IPR019955),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J013126L13;Oryzabase=22686;Expression=AK067974;TENOR=Os02t0198600-01;KEGG=Os02t0198600-01
Chr02	irgsp1_rep	five_prime_UTR	5524023	5524148	.	+	.	Parent=Os02t0198600-01
Chr02	irgsp1_rep	CDS	5524149	5524214	.	+	0	Parent=Os02t0198600-01
Chr02	irgsp1_rep	CDS	5524609	5524641	.	+	0	Parent=Os02t0198600-01
Chr02	irgsp1_rep	CDS	5524750	5524880	.	+	0	Parent=Os02t0198600-01
Chr02	irgsp1_rep	CDS	5525174	5525282	.	+	1	Parent=Os02t0198600-01
Chr02	irgsp1_rep	CDS	5525406	5525522	.	+	0	Parent=Os02t0198600-01
Chr02	irgsp1_rep	CDS	5525896	5525961	.	+	0	Parent=Os02t0198600-01
Chr02	irgsp1_rep	CDS	5526314	5526376	.	+	0	Parent=Os02t0198600-01
Chr02	irgsp1_rep	CDS	5526459	5526503	.	+	0	Parent=Os02t0198600-01
Chr02	irgsp1_rep	CDS	5526690	5526751	.	+	0	Parent=Os02t0198600-01
Chr02	irgsp1_rep	CDS	5526974	5527067	.	+	1	Parent=Os02t0198600-01
Chr02	irgsp1_rep	CDS	5527375	5527467	.	+	0	Parent=Os02t0198600-01
Chr02	irgsp1_rep	CDS	5527561	5527630	.	+	0	Parent=Os02t0198600-01
Chr02	irgsp1_rep	CDS	5527816	5527892	.	+	2	Parent=Os02t0198600-01
Chr02	irgsp1_rep	CDS	5527976	5528033	.	+	0	Parent=Os02t0198600-01
Chr02	irgsp1_rep	CDS	5528135	5528166	.	+	2	Parent=Os02t0198600-01
Chr02	irgsp1_rep	CDS	5528245	5528376	.	+	0	Parent=Os02t0198600-01
Chr02	irgsp1_rep	three_prime_UTR	5528377	5528685	.	+	.	Parent=Os02t0198600-01
Chr02	irgsp1_rep	mRNA	5527583	5528679	.	+	.	ID=Os02t0198600-02;Name=Os02t0198600-02;Locus_id=Os02g0198600;Note=Similar to predicted protein.;Transcript_evidence=AK058299 (DDBJ%2C Best hit);ORF_evidence=NP_566451.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal (IPR000449),UBA-like (IPR009060),Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (IPR015940);NIAS_FLcDNA=001-013-F10;Oryzabase=22686;Expression=AK058299;TENOR=Os02t0198600-02;KEGG=Os02t0198600-02
Chr02	irgsp1_rep	five_prime_UTR	5527583	5527584	.	+	.	Parent=Os02t0198600-02
Chr02	irgsp1_rep	CDS	5527585	5527630	.	+	0	Parent=Os02t0198600-02
Chr02	irgsp1_rep	CDS	5527816	5527892	.	+	2	Parent=Os02t0198600-02
Chr02	irgsp1_rep	CDS	5527976	5528033	.	+	0	Parent=Os02t0198600-02
Chr02	irgsp1_rep	CDS	5528135	5528166	.	+	2	Parent=Os02t0198600-02
Chr02	irgsp1_rep	CDS	5528245	5528376	.	+	0	Parent=Os02t0198600-02
Chr02	irgsp1_rep	three_prime_UTR	5528377	5528679	.	+	.	Parent=Os02t0198600-02
Chr02	irgsp1_rep	mRNA	5530018	5536941	.	-	.	ID=Os02t0198700-01;Name=Os02t0198700-01;Locus_id=Os02g0198700;Oryzabase Gene Symbol Synonym(s)=OsSub12%2C SUB12;Oryzabase Gene Name Synonym(s)=Subtilisin 12%2C SUBTILISIN 12;Note=Similar to Subtilisin-like protease.;Transcript_evidence=AK120287 (DDBJ%2C Best hit);ORF_evidence=C0JA62 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);NIAS_FLcDNA=J013050B17;Oryzabase=20101;Expression=AK120287;TENOR=Os02t0198700-01;KEGG=Os02t0198700-01
Chr02	irgsp1_rep	five_prime_UTR	5536899	5536941	.	-	.	Parent=Os02t0198700-01
Chr02	irgsp1_rep	CDS	5536648	5536898	.	-	0	Parent=Os02t0198700-01
Chr02	irgsp1_rep	CDS	5536446	5536543	.	-	1	Parent=Os02t0198700-01
Chr02	irgsp1_rep	CDS	5536157	5536321	.	-	2	Parent=Os02t0198700-01
Chr02	irgsp1_rep	CDS	5534499	5534607	.	-	2	Parent=Os02t0198700-01
Chr02	irgsp1_rep	CDS	5531815	5532450	.	-	1	Parent=Os02t0198700-01
Chr02	irgsp1_rep	CDS	5531160	5531405	.	-	1	Parent=Os02t0198700-01
Chr02	irgsp1_rep	CDS	5530184	5531078	.	-	1	Parent=Os02t0198700-01
Chr02	irgsp1_rep	three_prime_UTR	5530018	5530183	.	-	.	Parent=Os02t0198700-01
Chr02	irgsp1_rep	mRNA	5530016	5531423	.	-	.	ID=Os02t0198700-02;Name=Os02t0198700-02;Locus_id=Os02g0198700;Oryzabase Gene Symbol Synonym(s)=OsSub12%2C SUB12;Oryzabase Gene Name Synonym(s)=Subtilisin 12%2C SUBTILISIN 12;Note=Similar to Subtilisin-like protease.;Transcript_evidence=AK106394 (DDBJ%2C Best hit);ORF_evidence=C0JA62 (UniProt);InterPro=Protease-associated domain%2C PA (IPR003137);NIAS_FLcDNA=002-102-F05;Oryzabase=20101;Expression=AK106394;TENOR=Os02t0198700-02;KEGG=Os02t0198700-02
Chr02	irgsp1_rep	five_prime_UTR	5531417	5531423	.	-	.	Parent=Os02t0198700-02
Chr02	irgsp1_rep	CDS	5531156	5531416	.	-	0	Parent=Os02t0198700-02
Chr02	irgsp1_rep	three_prime_UTR	5530016	5531155	.	-	.	Parent=Os02t0198700-02
Chr02	irgsp1_rep	mRNA	5548055	5549534	.	+	.	ID=Os02t0198800-01;Name=Os02t0198800-01;Locus_id=Os02g0198800;Note=Protein of unknown function DUF868%2C plant domain containing protein.;Transcript_evidence=AK105560 (DDBJ%2C Best hit);ORF_evidence=B9F3V4 (UniProt);InterPro=Protein of unknown function DUF868%2C plant (IPR008586);NIAS_FLcDNA=001-128-B08;TENOR=Os02t0198800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	5548055	5548208	.	+	.	Parent=Os02t0198800-01
Chr02	irgsp1_rep	CDS	5548209	5548209	.	+	0	Parent=Os02t0198800-01
Chr02	irgsp1_rep	CDS	5548328	5549445	.	+	2	Parent=Os02t0198800-01
Chr02	irgsp1_rep	three_prime_UTR	5549446	5549534	.	+	.	Parent=Os02t0198800-01
Chr02	irgsp1_rep	mRNA	5550229	5552064	.	-	.	ID=Os02t0198900-01;Name=Os02t0198900-01;Locus_id=Os02g0198900;Oryzabase Gene Symbol Synonym(s)=OsRPL7/L12%2C RPL7/L12%2C RPL7%2C RPL12%2C OsRPL7%2C OsRPL12;Oryzabase Gene Name Synonym(s)=ribosomal protein L7/L12%2C ribosomal protein large subunit 7/12;Note=Similar to Ribosomal protein L7/L12.;Transcript_evidence=AK070231 (DDBJ%2C Best hit);ORF_evidence=B6TJY8 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L7/L12%2C C-terminal (IPR013823),Ribosomal protein L7/L12%2C C-terminal/adaptor protein ClpS-like (IPR014719),Ribosomal protein L7/L12%2C chloroplast (IPR015608);NIAS_FLcDNA=J023041J19;Oryzabase=22193;Expression=AK070231;TENOR=Os02t0198900-01;KEGG=Os02t0198900-01
Chr02	irgsp1_rep	five_prime_UTR	5551950	5552064	.	-	.	Parent=Os02t0198900-01
Chr02	irgsp1_rep	five_prime_UTR	5551054	5551124	.	-	.	Parent=Os02t0198900-01
Chr02	irgsp1_rep	CDS	5550472	5551053	.	-	0	Parent=Os02t0198900-01
Chr02	irgsp1_rep	three_prime_UTR	5550229	5550471	.	-	.	Parent=Os02t0198900-01
Chr02	irgsp1_rep	mRNA	5566073	5567620	.	+	.	ID=Os02t0199200-00;Name=Os02t0199200-00;Locus_id=Os02g0199200;Note=Disease resistance protein domain containing protein.;Transcript_evidence=AK362267 (DDBJ);ORF_evidence=Q6H726 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os02t0199200-00
Chr02	irgsp1_rep	CDS	5566073	5567620	.	+	0	Parent=Os02t0199200-00
Chr02	irgsp1_rep	mRNA	5567953	5569801	.	-	.	ID=Os02t0199300-01;Name=Os02t0199300-01;Locus_id=Os02g0199300;Oryzabase Gene Symbol Synonym(s)=OsFKBP16-1;Oryzabase Gene Name Synonym(s)=FK506 binding protein 16-1;Note=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type domain containing protein.;Transcript_evidence=AK064726 (DDBJ%2C Best hit);ORF_evidence=D0E7J2 (UniProt);GO=Biological Process: protein folding (GO:0006457);InterPro=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type%2C domain (IPR001179),Peptidyl-prolyl cis-trans isomerase%2C FKBP-type (IPR023566);NIAS_FLcDNA=002-118-H03;Oryzabase=10028;Expression=AK064726;TENOR=Os02t0199300-01;KEGG=Os02t0199300-01
Chr02	irgsp1_rep	five_prime_UTR	5569755	5569801	.	-	.	Parent=Os02t0199300-01
Chr02	irgsp1_rep	CDS	5569693	5569754	.	-	0	Parent=Os02t0199300-01
Chr02	irgsp1_rep	CDS	5569414	5569602	.	-	1	Parent=Os02t0199300-01
Chr02	irgsp1_rep	CDS	5569267	5569301	.	-	1	Parent=Os02t0199300-01
Chr02	irgsp1_rep	CDS	5568957	5569050	.	-	2	Parent=Os02t0199300-01
Chr02	irgsp1_rep	CDS	5568765	5568825	.	-	1	Parent=Os02t0199300-01
Chr02	irgsp1_rep	CDS	5568602	5568647	.	-	0	Parent=Os02t0199300-01
Chr02	irgsp1_rep	CDS	5568396	5568466	.	-	2	Parent=Os02t0199300-01
Chr02	irgsp1_rep	CDS	5568149	5568226	.	-	0	Parent=Os02t0199300-01
Chr02	irgsp1_rep	three_prime_UTR	5567953	5568148	.	-	.	Parent=Os02t0199300-01
Chr02	irgsp1_rep	mRNA	5573182	5576447	.	+	.	ID=Os02t0199500-01;Name=Os02t0199500-01;Locus_id=Os02g0199500;Oryzabase Gene Symbol Synonym(s)=OsFbox071%2C OsFbox71%2C Os_F0306;Oryzabase Gene Name Synonym(s)=F-box protein 71;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK071208 (DDBJ%2C Best hit);ORF_evidence=NP_001148841.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023088N10;Oryzabase=16868;Expression=AK071208;TENOR=Os02t0199500-01;KEGG=Os02t0199500-01
Chr02	irgsp1_rep	five_prime_UTR	5573182	5573377	.	+	.	Parent=Os02t0199500-01
Chr02	irgsp1_rep	five_prime_UTR	5574687	5574706	.	+	.	Parent=Os02t0199500-01
Chr02	irgsp1_rep	CDS	5574707	5576017	.	+	0	Parent=Os02t0199500-01
Chr02	irgsp1_rep	three_prime_UTR	5576018	5576447	.	+	.	Parent=Os02t0199500-01
Chr02	irgsp1_rep	mRNA	5576675	5577121	.	-	.	ID=Os02t0199600-00;Name=Os02t0199600-00;Locus_id=Os02g0199600;Note=Similar to F-box domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001150620.1 (RefSeq);TENOR=Os02t0199600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	5576675	5577121	.	-	0	Parent=Os02t0199600-00
Chr02	irgsp1_rep	mRNA	5577033	5577976	.	+	.	ID=Os02t0199666-00;Name=Os02t0199666-00;Locus_id=Os02g0199666;Note=Hypothetical protein.;Transcript_evidence=tplb0053b10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0199666-00
Chr02	irgsp1_rep	five_prime_UTR	5577033	5577034	.	+	.	Parent=Os02t0199666-00
Chr02	irgsp1_rep	CDS	5577035	5577367	.	+	0	Parent=Os02t0199666-00
Chr02	irgsp1_rep	three_prime_UTR	5577368	5577976	.	+	.	Parent=Os02t0199666-00
Chr02	irgsp1_rep	mRNA	5587185	5593645	.	-	.	ID=Os02t0199800-01;Name=Os02t0199800-01;Locus_id=Os02g0199800;Oryzabase Gene Symbol Synonym(s)=OsSTA54;Note=Similar to No pollen.;Transcript_evidence=AK072970 (DDBJ%2C Best hit);ORF_evidence=B9F3V9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),GRAM (IPR004182),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=J023144C18;Oryzabase=19357;Expression=AK072970;TENOR=Os02t0199800-01;KEGG=Os02t0199800-01
Chr02	irgsp1_rep	five_prime_UTR	5593576	5593645	.	-	.	Parent=Os02t0199800-01
Chr02	irgsp1_rep	CDS	5593167	5593575	.	-	0	Parent=Os02t0199800-01
Chr02	irgsp1_rep	CDS	5591100	5592542	.	-	2	Parent=Os02t0199800-01
Chr02	irgsp1_rep	CDS	5590651	5590833	.	-	2	Parent=Os02t0199800-01
Chr02	irgsp1_rep	CDS	5590269	5590549	.	-	2	Parent=Os02t0199800-01
Chr02	irgsp1_rep	CDS	5590065	5590181	.	-	0	Parent=Os02t0199800-01
Chr02	irgsp1_rep	CDS	5589049	5589311	.	-	0	Parent=Os02t0199800-01
Chr02	irgsp1_rep	CDS	5588522	5588687	.	-	1	Parent=Os02t0199800-01
Chr02	irgsp1_rep	CDS	5588154	5588423	.	-	0	Parent=Os02t0199800-01
Chr02	irgsp1_rep	CDS	5587864	5588056	.	-	0	Parent=Os02t0199800-01
Chr02	irgsp1_rep	CDS	5587488	5587498	.	-	2	Parent=Os02t0199800-01
Chr02	irgsp1_rep	three_prime_UTR	5587185	5587487	.	-	.	Parent=Os02t0199800-01
Chr02	irgsp1_rep	mRNA	5595400	5600848	.	-	.	ID=Os02t0199900-01;Name=Os02t0199900-01;Locus_id=Os02g0199900;CGSNL Gene Symbol=RPT4A;CGSNL Gene Name=19S REGULATORY PARTICLE ATPASE SUBUNIT 4A;Oryzabase Gene Symbol Synonym(s)=OsRpt4a%2C Rpt4a;Oryzabase Gene Name Synonym(s)=19S regulatory particle ATPase subunit 4a%2C RP triple A-ATPase 4a;Note=Similar to 26S proteasome regulatory complex subunit p42D.;Transcript_evidence=AK099357 (DDBJ%2C Best hit);ORF_evidence=NP_001148485.1 (RefSeq);GO=Biological Process: protein catabolic process (GO:0030163),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960),26S proteasome subunit P45 (IPR005937);NIAS_FLcDNA=J033041G07;Oryzabase=20557;Expression=AK099357;TENOR=Os02t0199900-01;KEGG=Os02t0199900-01
Chr02	irgsp1_rep	five_prime_UTR	5600774	5600848	.	-	.	Parent=Os02t0199900-01
Chr02	irgsp1_rep	CDS	5600668	5600773	.	-	0	Parent=Os02t0199900-01
Chr02	irgsp1_rep	CDS	5598483	5598602	.	-	2	Parent=Os02t0199900-01
Chr02	irgsp1_rep	CDS	5598089	5598225	.	-	2	Parent=Os02t0199900-01
Chr02	irgsp1_rep	CDS	5597795	5597956	.	-	0	Parent=Os02t0199900-01
Chr02	irgsp1_rep	CDS	5597583	5597669	.	-	0	Parent=Os02t0199900-01
Chr02	irgsp1_rep	CDS	5597415	5597501	.	-	0	Parent=Os02t0199900-01
Chr02	irgsp1_rep	CDS	5596992	5597129	.	-	0	Parent=Os02t0199900-01
Chr02	irgsp1_rep	CDS	5596136	5596327	.	-	0	Parent=Os02t0199900-01
Chr02	irgsp1_rep	CDS	5595973	5596071	.	-	0	Parent=Os02t0199900-01
Chr02	irgsp1_rep	CDS	5595813	5595887	.	-	0	Parent=Os02t0199900-01
Chr02	irgsp1_rep	three_prime_UTR	5595400	5595812	.	-	.	Parent=Os02t0199900-01
Chr02	irgsp1_rep	mRNA	5595457	5600847	.	-	.	ID=Os02t0199900-02;Name=Os02t0199900-02;Locus_id=Os02g0199900;CGSNL Gene Symbol=RPT4A;CGSNL Gene Name=19S REGULATORY PARTICLE ATPASE SUBUNIT 4A;Oryzabase Gene Symbol Synonym(s)=OsRpt4a%2C Rpt4a;Oryzabase Gene Name Synonym(s)=19S regulatory particle ATPase subunit 4a%2C RP triple A-ATPase 4a;Note=Similar to 26S protease regulatory subunit S10B.;Transcript_evidence=AK067026 (DDBJ%2C Best hit);ORF_evidence=NP_001148485.1 (RefSeq);GO=Molecular Function: ATP binding (GO:0005524);InterPro=ATPase%2C AAA-type%2C core (IPR003959);NIAS_FLcDNA=J013091H06;Oryzabase=20557;Expression=AK067026;TENOR=Os02t0199900-02;KEGG=Os02t0199900-02
Chr02	irgsp1_rep	five_prime_UTR	5600774	5600847	.	-	.	Parent=Os02t0199900-02
Chr02	irgsp1_rep	CDS	5600668	5600773	.	-	0	Parent=Os02t0199900-02
Chr02	irgsp1_rep	CDS	5598483	5598602	.	-	2	Parent=Os02t0199900-02
Chr02	irgsp1_rep	CDS	5598089	5598225	.	-	2	Parent=Os02t0199900-02
Chr02	irgsp1_rep	CDS	5597795	5597956	.	-	0	Parent=Os02t0199900-02
Chr02	irgsp1_rep	CDS	5597562	5597669	.	-	0	Parent=Os02t0199900-02
Chr02	irgsp1_rep	three_prime_UTR	5597415	5597561	.	-	.	Parent=Os02t0199900-02
Chr02	irgsp1_rep	three_prime_UTR	5596992	5597129	.	-	.	Parent=Os02t0199900-02
Chr02	irgsp1_rep	three_prime_UTR	5596136	5596327	.	-	.	Parent=Os02t0199900-02
Chr02	irgsp1_rep	three_prime_UTR	5595973	5596071	.	-	.	Parent=Os02t0199900-02
Chr02	irgsp1_rep	three_prime_UTR	5595457	5595887	.	-	.	Parent=Os02t0199900-02
Chr02	irgsp1_rep	mRNA	5595400	5598161	.	-	.	ID=Os02t0199900-03;Name=Os02t0199900-03;Locus_id=Os02g0199900;CGSNL Gene Symbol=RPT4A;CGSNL Gene Name=19S REGULATORY PARTICLE ATPASE SUBUNIT 4A;Oryzabase Gene Symbol Synonym(s)=OsRpt4a%2C Rpt4a;Oryzabase Gene Name Synonym(s)=19S regulatory particle ATPase subunit 4a%2C RP triple A-ATPase 4a;Note=Similar to 26S protease regulatory subunit S10B.;Transcript_evidence=AK104698 (DDBJ%2C Best hit);ORF_evidence=NP_001148485.1 (RefSeq);GO=Biological Process: protein catabolic process (GO:0030163),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960),26S proteasome subunit P45 (IPR005937);NIAS_FLcDNA=001-037-C01;Oryzabase=20557;Expression=AK104698;TENOR=Os02t0199900-03;KEGG=Os02t0199900-03
Chr02	irgsp1_rep	five_prime_UTR	5598161	5598161	.	-	.	Parent=Os02t0199900-03
Chr02	irgsp1_rep	CDS	5598089	5598160	.	-	0	Parent=Os02t0199900-03
Chr02	irgsp1_rep	CDS	5597795	5597956	.	-	0	Parent=Os02t0199900-03
Chr02	irgsp1_rep	CDS	5597583	5597669	.	-	0	Parent=Os02t0199900-03
Chr02	irgsp1_rep	CDS	5597415	5597501	.	-	0	Parent=Os02t0199900-03
Chr02	irgsp1_rep	CDS	5596992	5597129	.	-	0	Parent=Os02t0199900-03
Chr02	irgsp1_rep	CDS	5596136	5596327	.	-	0	Parent=Os02t0199900-03
Chr02	irgsp1_rep	CDS	5595973	5596071	.	-	0	Parent=Os02t0199900-03
Chr02	irgsp1_rep	CDS	5595813	5595887	.	-	0	Parent=Os02t0199900-03
Chr02	irgsp1_rep	three_prime_UTR	5595400	5595812	.	-	.	Parent=Os02t0199900-03
Chr02	irgsp1_rep	mRNA	5595821	5600781	.	+	.	ID=Os02t0199950-00;Name=Os02t0199950-00;Locus_id=Os02g0199950;Note=Non-protein coding transcript.;Transcript_evidence=tplb0035c03 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os02t0199950-00
Chr02	irgsp1_rep	exon	5595821	5595869	.	+	.	Parent=Os02t0199950-00
Chr02	irgsp1_rep	exon	5595956	5596068	.	+	.	Parent=Os02t0199950-00
Chr02	irgsp1_rep	exon	5596132	5596329	.	+	.	Parent=Os02t0199950-00
Chr02	irgsp1_rep	exon	5596988	5597133	.	+	.	Parent=Os02t0199950-00
Chr02	irgsp1_rep	exon	5597409	5597471	.	+	.	Parent=Os02t0199950-00
Chr02	irgsp1_rep	exon	5597548	5597659	.	+	.	Parent=Os02t0199950-00
Chr02	irgsp1_rep	exon	5597788	5597954	.	+	.	Parent=Os02t0199950-00
Chr02	irgsp1_rep	exon	5598087	5598240	.	+	.	Parent=Os02t0199950-00
Chr02	irgsp1_rep	exon	5598501	5598591	.	+	.	Parent=Os02t0199950-00
Chr02	irgsp1_rep	exon	5600656	5600781	.	+	.	Parent=Os02t0199950-00
Chr02	irgsp1_rep	mRNA	5604321	5609451	.	+	.	ID=Os02t0200000-01;Name=Os02t0200000-01;Locus_id=Os02g0200000;Note=Phosphatidylinositol transfer protein-like%2C N-terminal domain containing protein.;Transcript_evidence=AK068100 (DDBJ%2C Best hit);ORF_evidence=NP_001149083.1 (RefSeq);InterPro=Cellular retinaldehyde-binding/triple function%2C C-terminal (IPR001251),Cellular retinaldehyde-binding/triple function%2C N-terminal (IPR008273),Phosphatidylinositol transfer protein-like%2C N-terminal (IPR011074);NIAS_FLcDNA=J013130K11;Expression=AK068100;TENOR=Os02t0200000-01;KEGG=Os02t0200000-01
Chr02	irgsp1_rep	five_prime_UTR	5604321	5604553	.	+	.	Parent=Os02t0200000-01
Chr02	irgsp1_rep	CDS	5604554	5604608	.	+	0	Parent=Os02t0200000-01
Chr02	irgsp1_rep	CDS	5604706	5604734	.	+	2	Parent=Os02t0200000-01
Chr02	irgsp1_rep	CDS	5606558	5606641	.	+	0	Parent=Os02t0200000-01
Chr02	irgsp1_rep	CDS	5606728	5606781	.	+	0	Parent=Os02t0200000-01
Chr02	irgsp1_rep	CDS	5606958	5607035	.	+	0	Parent=Os02t0200000-01
Chr02	irgsp1_rep	CDS	5607753	5607806	.	+	0	Parent=Os02t0200000-01
Chr02	irgsp1_rep	CDS	5608060	5608119	.	+	0	Parent=Os02t0200000-01
Chr02	irgsp1_rep	CDS	5608202	5608297	.	+	0	Parent=Os02t0200000-01
Chr02	irgsp1_rep	CDS	5608403	5608504	.	+	0	Parent=Os02t0200000-01
Chr02	irgsp1_rep	CDS	5608593	5608673	.	+	0	Parent=Os02t0200000-01
Chr02	irgsp1_rep	CDS	5608819	5609109	.	+	0	Parent=Os02t0200000-01
Chr02	irgsp1_rep	three_prime_UTR	5609110	5609451	.	+	.	Parent=Os02t0200000-01
Chr02	irgsp1_rep	mRNA	5611553	5614432	.	-	.	ID=Os02t0200300-01;Name=Os02t0200300-01;Locus_id=Os02g0200300;Note=Similar to Beta-1%2C3-glucanase-like protein.;Transcript_evidence=AK100683 (DDBJ%2C Best hit);ORF_evidence=A4PID2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J023113M05;Expression=AK100683;TENOR=Os02t0200300-01;KEGG=Os02t0200300-01
Chr02	irgsp1_rep	five_prime_UTR	5613979	5614432	.	-	.	Parent=Os02t0200300-01
Chr02	irgsp1_rep	CDS	5612950	5613978	.	-	0	Parent=Os02t0200300-01
Chr02	irgsp1_rep	CDS	5612791	5612937	.	-	0	Parent=Os02t0200300-01
Chr02	irgsp1_rep	CDS	5612041	5612127	.	-	0	Parent=Os02t0200300-01
Chr02	irgsp1_rep	three_prime_UTR	5611553	5612040	.	-	.	Parent=Os02t0200300-01
Chr02	irgsp1_rep	mRNA	5611942	5614363	.	-	.	ID=Os02t0200300-02;Name=Os02t0200300-02;Locus_id=Os02g0200300;Note=Similar to Beta-1%2C3-glucanase.;Transcript_evidence=AK067916 (DDBJ%2C Best hit);ORF_evidence=A4PID2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J013123P07;TENOR=Os02t0200300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	5613979	5614363	.	-	.	Parent=Os02t0200300-02
Chr02	irgsp1_rep	CDS	5612791	5613978	.	-	0	Parent=Os02t0200300-02
Chr02	irgsp1_rep	CDS	5612041	5612127	.	-	0	Parent=Os02t0200300-02
Chr02	irgsp1_rep	three_prime_UTR	5611942	5612040	.	-	.	Parent=Os02t0200300-02
Chr02	irgsp1_rep	mRNA	5623379	5627209	.	+	.	ID=Os02t0200800-01;Name=Os02t0200800-01;Locus_id=Os02g0200800;Oryzabase Gene Symbol Synonym(s)=BIP118;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 118%2C BRI1-interacting protein 118%2C brassinosteroid receptor kinase-interacting protein 118;Note=Targeting for Xklp2 family protein.;Transcript_evidence=AK241636 (DDBJ%2C Best hit);ORF_evidence=Q761Z6 (UniProt);InterPro=Xklp2 targeting protein (IPR009675);NIAS_FLcDNA=J065188E23;Oryzabase=13699;TENOR=Os02t0200800-01;KEGG=Os02t0200800-01
Chr02	irgsp1_rep	five_prime_UTR	5623379	5623461	.	+	.	Parent=Os02t0200800-01
Chr02	irgsp1_rep	five_prime_UTR	5623887	5623952	.	+	.	Parent=Os02t0200800-01
Chr02	irgsp1_rep	CDS	5623953	5624171	.	+	0	Parent=Os02t0200800-01
Chr02	irgsp1_rep	CDS	5624251	5624430	.	+	0	Parent=Os02t0200800-01
Chr02	irgsp1_rep	CDS	5624533	5624591	.	+	0	Parent=Os02t0200800-01
Chr02	irgsp1_rep	CDS	5625243	5625390	.	+	1	Parent=Os02t0200800-01
Chr02	irgsp1_rep	CDS	5625476	5625547	.	+	0	Parent=Os02t0200800-01
Chr02	irgsp1_rep	CDS	5625636	5625746	.	+	0	Parent=Os02t0200800-01
Chr02	irgsp1_rep	CDS	5626615	5627013	.	+	0	Parent=Os02t0200800-01
Chr02	irgsp1_rep	three_prime_UTR	5627014	5627209	.	+	.	Parent=Os02t0200800-01
Chr02	irgsp1_rep	mRNA	5628122	5631254	.	-	.	ID=Os02t0200900-01;Name=Os02t0200900-01;Locus_id=Os02g0200900;Oryzabase Gene Symbol Synonym(s)=OsFbox072%2C OsFbox72%2C Fbox72%2C Os_F0508%2C OsEBF2%2C EBF2;Oryzabase Gene Name Synonym(s)=F-box protein 72%2C EIN3-BINDING F-BOX PROTEIN 2;Note=Hypothetical conserved gene.;Transcript_evidence=AK064800 (DDBJ%2C Best hit);ORF_evidence=C3SAA8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Leucine-rich repeat%2C cysteine-containing subtype (IPR006553),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013000D06;Oryzabase=16869;Expression=AK064800;TENOR=Os02t0200900-01;KEGG=Os02t0200900-01
Chr02	irgsp1_rep	five_prime_UTR	5631048	5631254	.	-	.	Parent=Os02t0200900-01
Chr02	irgsp1_rep	CDS	5631023	5631047	.	-	0	Parent=Os02t0200900-01
Chr02	irgsp1_rep	CDS	5628913	5630870	.	-	2	Parent=Os02t0200900-01
Chr02	irgsp1_rep	three_prime_UTR	5628122	5628912	.	-	.	Parent=Os02t0200900-01
Chr02	irgsp1_rep	mRNA	5628122	5631244	.	-	.	ID=Os02t0200900-02;Name=Os02t0200900-02;Locus_id=Os02g0200900;Oryzabase Gene Symbol Synonym(s)=OsFbox072%2C OsFbox72%2C Fbox72%2C Os_F0508%2C OsEBF2%2C EBF2;Oryzabase Gene Name Synonym(s)=F-box protein 72%2C EIN3-BINDING F-BOX PROTEIN 2;Note=Leucine-rich repeat%2C cysteine-containing containing protein.;Transcript_evidence=AK067705 (DDBJ%2C Best hit);ORF_evidence=Q6Z796 (UniProt);InterPro=Leucine-rich repeat%2C cysteine-containing subtype (IPR006553);NIAS_FLcDNA=J013116M10;Oryzabase=16869;Expression=AK067705;TENOR=Os02t0200900-02;KEGG=Os02t0200900-02
Chr02	irgsp1_rep	five_prime_UTR	5631048	5631244	.	-	.	Parent=Os02t0200900-02
Chr02	irgsp1_rep	CDS	5631023	5631047	.	-	0	Parent=Os02t0200900-02
Chr02	irgsp1_rep	CDS	5630739	5630870	.	-	2	Parent=Os02t0200900-02
Chr02	irgsp1_rep	CDS	5628913	5630291	.	-	2	Parent=Os02t0200900-02
Chr02	irgsp1_rep	three_prime_UTR	5628122	5628912	.	-	.	Parent=Os02t0200900-02
Chr02	irgsp1_rep	mRNA	5628122	5629830	.	-	.	ID=Os02t0200900-03;Name=Os02t0200900-03;Locus_id=Os02g0200900;Oryzabase Gene Symbol Synonym(s)=OsFbox072%2C OsFbox72%2C Fbox72%2C Os_F0508%2C OsEBF2%2C EBF2;Oryzabase Gene Name Synonym(s)=F-box protein 72%2C EIN3-BINDING F-BOX PROTEIN 2;Note=Hypothetical conserved gene.;Transcript_evidence=AK062067 (DDBJ%2C Best hit);ORF_evidence=Q6Z796 (UniProt);InterPro=Leucine-rich repeat%2C cysteine-containing subtype (IPR006553);NIAS_FLcDNA=001-044-D11;Oryzabase=16869;TENOR=Os02t0200900-03
Chr02	irgsp1_rep	CDS	5628913	5629830	.	-	0	Parent=Os02t0200900-03
Chr02	irgsp1_rep	three_prime_UTR	5628122	5628912	.	-	.	Parent=Os02t0200900-03
Chr02	irgsp1_rep	mRNA	5628122	5629119	.	-	.	ID=Os02t0200900-04;Name=Os02t0200900-04;Locus_id=Os02g0200900;Oryzabase Gene Symbol Synonym(s)=OsFbox072%2C OsFbox72%2C Fbox72%2C Os_F0508%2C OsEBF2%2C EBF2;Oryzabase Gene Name Synonym(s)=F-box protein 72%2C EIN3-BINDING F-BOX PROTEIN 2;Note=Similar to F-box family member.;Transcript_evidence=AK061400 (DDBJ%2C Best hit);ORF_evidence=NP_001132560.1 (RefSeq);NIAS_FLcDNA=006-305-G02;Oryzabase=16869;TENOR=Os02t0200900-04
Chr02	irgsp1_rep	CDS	5628913	5629119	.	-	0	Parent=Os02t0200900-04
Chr02	irgsp1_rep	three_prime_UTR	5628122	5628912	.	-	.	Parent=Os02t0200900-04
Chr02	irgsp1_rep	mRNA	5631540	5632106	.	-	.	ID=Os02t0200950-00;Name=Os02t0200950-00;Locus_id=Os02g0200950;Note=Non-protein coding transcript.;Transcript_evidence=CU406138 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os02t0200950-00
Chr02	irgsp1_rep	exon	5631540	5632106	.	-	.	Parent=Os02t0200950-00
Chr02	irgsp1_rep	mRNA	5640781	5644568	.	-	.	ID=Os02t0201000-01;Name=Os02t0201000-01;Locus_id=Os02g0201000;Oryzabase Gene Symbol Synonym(s)=Hsp20;Oryzabase Gene Name Synonym(s)=heat shock protein 20;Note=Conserved hypothetical protein.;Transcript_evidence=AK064792 (DDBJ%2C Best hit);ORF_evidence=A2X247 (UniProt);NIAS_FLcDNA=J013000C11;Oryzabase=23436;TENOR=Os02t0201000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	5644374	5644568	.	-	.	Parent=Os02t0201000-01
Chr02	irgsp1_rep	CDS	5644230	5644373	.	-	0	Parent=Os02t0201000-01
Chr02	irgsp1_rep	CDS	5642633	5642888	.	-	0	Parent=Os02t0201000-01
Chr02	irgsp1_rep	CDS	5641918	5642008	.	-	2	Parent=Os02t0201000-01
Chr02	irgsp1_rep	CDS	5641167	5641233	.	-	1	Parent=Os02t0201000-01
Chr02	irgsp1_rep	CDS	5641017	5641070	.	-	0	Parent=Os02t0201000-01
Chr02	irgsp1_rep	three_prime_UTR	5640781	5641016	.	-	.	Parent=Os02t0201000-01
Chr02	irgsp1_rep	mRNA	5639106	5644543	.	-	.	ID=Os02t0201000-02;Name=Os02t0201000-02;Locus_id=Os02g0201000;Oryzabase Gene Symbol Synonym(s)=Hsp20;Oryzabase Gene Name Synonym(s)=heat shock protein 20;Note=Similar to 23.6 kDa heat shock protein%2C mitochondrial.;Transcript_evidence=AK106682 (DDBJ%2C Best hit);ORF_evidence=B7EZJ7 (UniProt);InterPro=Heat shock protein Hsp20 (IPR002068),HSP20-like chaperone (IPR008978);NIAS_FLcDNA=002-114-B07;Oryzabase=23436;TENOR=Os02t0201000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	5644230	5644543	.	-	.	Parent=Os02t0201000-02
Chr02	irgsp1_rep	five_prime_UTR	5642633	5642888	.	-	.	Parent=Os02t0201000-02
Chr02	irgsp1_rep	five_prime_UTR	5641918	5642008	.	-	.	Parent=Os02t0201000-02
Chr02	irgsp1_rep	five_prime_UTR	5641167	5641233	.	-	.	Parent=Os02t0201000-02
Chr02	irgsp1_rep	five_prime_UTR	5640645	5641070	.	-	.	Parent=Os02t0201000-02
Chr02	irgsp1_rep	five_prime_UTR	5640361	5640566	.	-	.	Parent=Os02t0201000-02
Chr02	irgsp1_rep	CDS	5640072	5640360	.	-	0	Parent=Os02t0201000-02
Chr02	irgsp1_rep	CDS	5639315	5639685	.	-	2	Parent=Os02t0201000-02
Chr02	irgsp1_rep	three_prime_UTR	5639106	5639314	.	-	.	Parent=Os02t0201000-02
Chr02	irgsp1_rep	mRNA	5654435	5655345	.	-	.	ID=Os02t0201300-01;Name=Os02t0201300-01;Locus_id=Os02g0201300;Note=Conserved hypothetical protein.;Transcript_evidence=AK068381 (DDBJ%2C Best hit);ORF_evidence=A3A493 (UniProt);NIAS_FLcDNA=J013147P03;Expression=AK068381;TENOR=Os02t0201300-01;KEGG=Os02t0201300-01
Chr02	irgsp1_rep	five_prime_UTR	5655345	5655345	.	-	.	Parent=Os02t0201300-01
Chr02	irgsp1_rep	CDS	5655158	5655344	.	-	0	Parent=Os02t0201300-01
Chr02	irgsp1_rep	CDS	5654832	5655058	.	-	2	Parent=Os02t0201300-01
Chr02	irgsp1_rep	three_prime_UTR	5654435	5654831	.	-	.	Parent=Os02t0201300-01
Chr02	irgsp1_rep	mRNA	5663606	5664832	.	-	.	ID=Os02t0201401-00;Name=Os02t0201401-00;Locus_id=Os02g0201401;Note=Non-protein coding transcript.;Transcript_evidence=CT835326 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os02t0201401-00
Chr02	irgsp1_rep	exon	5664768	5664832	.	-	.	Parent=Os02t0201401-00
Chr02	irgsp1_rep	exon	5663606	5663932	.	-	.	Parent=Os02t0201401-00
Chr02	irgsp1_rep	mRNA	5665010	5668225	.	-	.	ID=Os02t0201500-00;Name=Os02t0201500-00;Locus_id=Os02g0201500;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B6TXR3 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial inner membrane (GO:0005743),Molecular Function: binding (GO:0005488),Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),Mitochondrial carrier protein (IPR002067),EF-hand-like domain (IPR011992),Mitochondrial substrate/solute carrier (IPR018108),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249),Mitochondrial carrier domain (IPR023395);TENOR=Os02t0201500-00;KEGG=Os02t0201500-00
Chr02	irgsp1_rep	CDS	5667745	5668225	.	-	0	Parent=Os02t0201500-00
Chr02	irgsp1_rep	CDS	5667087	5667278	.	-	2	Parent=Os02t0201500-00
Chr02	irgsp1_rep	CDS	5665460	5666245	.	-	2	Parent=Os02t0201500-00
Chr02	irgsp1_rep	CDS	5665285	5665375	.	-	2	Parent=Os02t0201500-00
Chr02	irgsp1_rep	CDS	5665010	5665202	.	-	1	Parent=Os02t0201500-00
Chr02	irgsp1_rep	mRNA	5683697	5685144	.	-	.	ID=Os02t0201800-01;Name=Os02t0201800-01;Locus_id=Os02g0201800;Note=Hypothetical gene.;Transcript_evidence=AK105703 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-201-D12;Expression=AK105703;TENOR=Os02t0201800-01;KEGG=Os02t0201800-01
Chr02	irgsp1_rep	five_prime_UTR	5684253	5685144	.	-	.	Parent=Os02t0201800-01
Chr02	irgsp1_rep	CDS	5684019	5684252	.	-	0	Parent=Os02t0201800-01
Chr02	irgsp1_rep	three_prime_UTR	5683697	5684018	.	-	.	Parent=Os02t0201800-01
Chr02	irgsp1_rep	mRNA	5694661	5697832	.	-	.	ID=Os02t0201900-01;Name=Os02t0201900-01;Locus_id=Os02g0201900;Oryzabase Gene Symbol Synonym(s)=OsRH41;Oryzabase Gene Name Synonym(s)=RNA helicase 41;Note=DNA/RNA helicase%2C C-terminal domain containing protein.;Transcript_evidence=AK072368 (DDBJ%2C Best hit),AK120266 (DDBJ%2C Best hit);ORF_evidence=XP_002884245.1 (RefSeq);NIAS_FLcDNA=J023072G22,J013047H13;Oryzabase=19151;TENOR=Os02t0201900-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	5697695	5697832	.	-	.	Parent=Os02t0201900-01
Chr02	irgsp1_rep	five_prime_UTR	5697299	5697329	.	-	.	Parent=Os02t0201900-01
Chr02	irgsp1_rep	CDS	5697229	5697298	.	-	0	Parent=Os02t0201900-01
Chr02	irgsp1_rep	CDS	5695010	5696550	.	-	2	Parent=Os02t0201900-01
Chr02	irgsp1_rep	three_prime_UTR	5694661	5695009	.	-	.	Parent=Os02t0201900-01
Chr02	irgsp1_rep	mRNA	5686730	5695385	.	-	.	ID=Os02t0201900-02;Name=Os02t0201900-02;Locus_id=Os02g0201900;Oryzabase Gene Symbol Synonym(s)=OsRH41;Oryzabase Gene Name Synonym(s)=RNA helicase 41;Note=DNA/RNA helicase%2C C-terminal domain containing protein.;Transcript_evidence=AK110871 (DDBJ%2C Best hit);ORF_evidence=B7EKP2 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524);InterPro=Helicase%2C C-terminal (IPR001650);NIAS_FLcDNA=002-172-E08;Oryzabase=19151;Expression=AK110871;TENOR=Os02t0201900-02;KEGG=Os02t0201900-02 (EC:3.6.4.13)
Chr02	irgsp1_rep	five_prime_UTR	5695385	5695385	.	-	.	Parent=Os02t0201900-02
Chr02	irgsp1_rep	CDS	5695010	5695384	.	-	0	Parent=Os02t0201900-02
Chr02	irgsp1_rep	three_prime_UTR	5694726	5695009	.	-	.	Parent=Os02t0201900-02
Chr02	irgsp1_rep	three_prime_UTR	5689079	5689654	.	-	.	Parent=Os02t0201900-02
Chr02	irgsp1_rep	three_prime_UTR	5686730	5686933	.	-	.	Parent=Os02t0201900-02
Chr02	irgsp1_rep	mRNA	5688698	5689609	.	+	.	ID=Os02t0202000-01;Name=Os02t0202000-01;Locus_id=Os02g0202000;RAP-DB Gene Symbol Synonym(s)=ERF3%2C Os02ERF%2C OsSHN1%2C OsWR1%2C WR1%2C OsERF#003%2C OsERF003%2C OsERF3%2C AP2/EREBP#012%2C AP2/EREBP12;RAP-DB Gene Name Synonym(s)=ETHYLENE RESPONSE FACTOR 3%2C ethylene response factor on Chromosome 2%2C rice wax synthesis regulatory gene 1%2C wax synthesis regulator 1%2C Wax Synthesis Regulatory 1%2C ethylene response factor 3%2C APETALA2/ethylene-responsive element binding protein 12;CGSNL Gene Symbol=ERF3;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 3;Oryzabase Gene Symbol Synonym(s)=Os02ERF%2C OsSHN1%2C OsWR1%2C WR1%2C OsERF#003%2C OsERF003%2C OsERF3%2C AP2/EREBP#012%2C AP2/EREBP12;Oryzabase Gene Name Synonym(s)=ethylene response factor on Chromosome 2%2C rice wax synthesis regulatory gene 1%2C wax synthesis regulator 1%2C Wax Synthesis Regulatory 1%2C ethylene response factor 3%2C APETALA2/ethylene-responsive element binding protein 12;Note=Ethylene response factor%2C Transcription factor%2C Regulation of wax synthesis%2C Drought tolerance;Transcript_evidence=DQ468387;ORF_evidence=Q6Z786;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700);InterPro=AP2/ERF transcription factor ERF/PTI6 (IPR017392),DNA-binding domain (IPR016177),AP2/ERF domain (IPR001471);Manual Curation=March 16%2C 2016;Literature_PMID=22130861;Oryzabase=9402;TENOR=Os02t0202000-00
Chr02	irgsp1_rep	five_prime_UTR	5688698	5688850	.	+	.	Parent=Os02t0202000-01
Chr02	irgsp1_rep	CDS	5688851	5688933	.	+	0	Parent=Os02t0202000-01
Chr02	irgsp1_rep	CDS	5689055	5689589	.	+	1	Parent=Os02t0202000-01
Chr02	irgsp1_rep	three_prime_UTR	5689590	5689609	.	+	.	Parent=Os02t0202000-01
Chr02	irgsp1_rep	mRNA	5706636	5709119	.	+	.	ID=Os02t0202200-01;Name=Os02t0202200-01;Locus_id=Os02g0202200;RAP-DB Gene Symbol Synonym(s)=OsSPX2%2C SPX2;RAP-DB Gene Name Synonym(s)=SPX (SYG/PHO81/XPR1) domain gene 2;CGSNL Gene Symbol=SPX2;CGSNL Gene Name=SPX DOMAIN PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsSPX2;Oryzabase Gene Name Synonym(s)=SPX (SYG/PHO81/XPR1) domain gene 2%2C SPX domain protein 2;Note=SPX domain-containing protein%2C Pi-dependent inhibition of phosphate starvation responses%2C Negative regulation of leaf inclination;Transcript_evidence=AK107245;ORF_evidence=Q6Z784;GO=Biological Process: cellular response to phosphate starvation (GO:0016036);InterPro=SPX domain-containing protein (IPR031142),SPX%2C N-terminal (IPR004331);NIAS_FLcDNA=002-125-F09;Manual Curation=May 22%2C 2018;Literature_PMID=29610209,25271318,19566645;Oryzabase=11153;Expression=AK107245;TENOR=Os02t0202200-01;KEGG=Os02t0202200-01
Chr02	irgsp1_rep	five_prime_UTR	5706636	5706713	.	+	.	Parent=Os02t0202200-01
Chr02	irgsp1_rep	CDS	5706714	5707013	.	+	0	Parent=Os02t0202200-01
Chr02	irgsp1_rep	CDS	5707100	5707217	.	+	0	Parent=Os02t0202200-01
Chr02	irgsp1_rep	CDS	5708329	5708753	.	+	2	Parent=Os02t0202200-01
Chr02	irgsp1_rep	three_prime_UTR	5708754	5709119	.	+	.	Parent=Os02t0202200-01
Chr02	irgsp1_rep	mRNA	5706709	5708726	.	-	.	ID=Os02t0202225-00;Name=Os02t0202225-00;Locus_id=Os02g0202225;Note=Non-protein coding transcript.;Transcript_evidence=EU963876 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0202225-00
Chr02	irgsp1_rep	exon	5708577	5708726	.	-	.	Parent=Os02t0202225-00
Chr02	irgsp1_rep	exon	5708355	5708494	.	-	.	Parent=Os02t0202225-00
Chr02	irgsp1_rep	exon	5707088	5707243	.	-	.	Parent=Os02t0202225-00
Chr02	irgsp1_rep	exon	5706875	5707011	.	-	.	Parent=Os02t0202225-00
Chr02	irgsp1_rep	exon	5706709	5706817	.	-	.	Parent=Os02t0202225-00
Chr02	irgsp1_rep	mRNA	5709870	5724705	.	-	.	ID=Os02t0202250-01;Name=Os02t0202250-01;Locus_id=Os02g0202250;Note=Hypothetical conserved gene.;Transcript_evidence=AK242780 (DDBJ%2C Best hit);ORF_evidence=B8ADU0 (UniProt);InterPro=Protein of unknown function DUF3414 (IPR021827);NIAS_FLcDNA=J090055K16;TENOR=Os02t0202250-01;KEGG=Os02t0202250-01
Chr02	irgsp1_rep	five_prime_UTR	5724564	5724705	.	-	.	Parent=Os02t0202250-01
Chr02	irgsp1_rep	CDS	5724412	5724563	.	-	0	Parent=Os02t0202250-01
Chr02	irgsp1_rep	CDS	5724224	5724343	.	-	1	Parent=Os02t0202250-01
Chr02	irgsp1_rep	CDS	5723837	5723957	.	-	1	Parent=Os02t0202250-01
Chr02	irgsp1_rep	CDS	5721966	5722163	.	-	0	Parent=Os02t0202250-01
Chr02	irgsp1_rep	CDS	5721759	5721877	.	-	0	Parent=Os02t0202250-01
Chr02	irgsp1_rep	CDS	5721486	5721636	.	-	1	Parent=Os02t0202250-01
Chr02	irgsp1_rep	CDS	5721288	5721400	.	-	0	Parent=Os02t0202250-01
Chr02	irgsp1_rep	CDS	5721135	5721216	.	-	1	Parent=Os02t0202250-01
Chr02	irgsp1_rep	CDS	5720966	5721052	.	-	0	Parent=Os02t0202250-01
Chr02	irgsp1_rep	CDS	5720801	5720878	.	-	0	Parent=Os02t0202250-01
Chr02	irgsp1_rep	CDS	5720544	5720726	.	-	0	Parent=Os02t0202250-01
Chr02	irgsp1_rep	CDS	5719562	5719654	.	-	0	Parent=Os02t0202250-01
Chr02	irgsp1_rep	CDS	5719383	5719496	.	-	0	Parent=Os02t0202250-01
Chr02	irgsp1_rep	CDS	5719142	5719300	.	-	0	Parent=Os02t0202250-01
Chr02	irgsp1_rep	CDS	5719001	5719056	.	-	0	Parent=Os02t0202250-01
Chr02	irgsp1_rep	CDS	5718842	5718914	.	-	1	Parent=Os02t0202250-01
Chr02	irgsp1_rep	CDS	5718551	5718741	.	-	0	Parent=Os02t0202250-01
Chr02	irgsp1_rep	CDS	5718313	5718445	.	-	1	Parent=Os02t0202250-01
Chr02	irgsp1_rep	CDS	5718165	5718242	.	-	0	Parent=Os02t0202250-01
Chr02	irgsp1_rep	CDS	5717545	5717709	.	-	0	Parent=Os02t0202250-01
Chr02	irgsp1_rep	CDS	5716650	5716820	.	-	0	Parent=Os02t0202250-01
Chr02	irgsp1_rep	CDS	5716438	5716572	.	-	0	Parent=Os02t0202250-01
Chr02	irgsp1_rep	CDS	5713889	5714032	.	-	0	Parent=Os02t0202250-01
Chr02	irgsp1_rep	CDS	5713694	5713816	.	-	0	Parent=Os02t0202250-01
Chr02	irgsp1_rep	CDS	5713504	5713596	.	-	0	Parent=Os02t0202250-01
Chr02	irgsp1_rep	CDS	5711618	5711743	.	-	0	Parent=Os02t0202250-01
Chr02	irgsp1_rep	CDS	5711321	5711421	.	-	0	Parent=Os02t0202250-01
Chr02	irgsp1_rep	CDS	5710542	5710661	.	-	1	Parent=Os02t0202250-01
Chr02	irgsp1_rep	CDS	5710374	5710449	.	-	1	Parent=Os02t0202250-01
Chr02	irgsp1_rep	CDS	5710002	5710085	.	-	0	Parent=Os02t0202250-01
Chr02	irgsp1_rep	three_prime_UTR	5709870	5710001	.	-	.	Parent=Os02t0202250-01
Chr02	irgsp1_rep	mRNA	5727721	5732172	.	-	.	ID=Os02t0202300-01;Name=Os02t0202300-01;Locus_id=Os02g0202300;Note=Protein of unknown function DUF3414 domain containing protein.;Transcript_evidence=AK071672 (DDBJ%2C Best hit);ORF_evidence=B8ADU0 (UniProt);InterPro=Protein of unknown function DUF3414 (IPR021827);NIAS_FLcDNA=J023107C12;Expression=AK071672;TENOR=Os02t0202300-01;KEGG=Os02t0202300-01
Chr02	irgsp1_rep	five_prime_UTR	5732111	5732172	.	-	.	Parent=Os02t0202300-01
Chr02	irgsp1_rep	CDS	5731961	5732110	.	-	0	Parent=Os02t0202300-01
Chr02	irgsp1_rep	CDS	5731752	5731847	.	-	0	Parent=Os02t0202300-01
Chr02	irgsp1_rep	CDS	5730652	5730726	.	-	0	Parent=Os02t0202300-01
Chr02	irgsp1_rep	CDS	5730460	5730564	.	-	0	Parent=Os02t0202300-01
Chr02	irgsp1_rep	CDS	5730264	5730374	.	-	0	Parent=Os02t0202300-01
Chr02	irgsp1_rep	CDS	5729459	5729618	.	-	0	Parent=Os02t0202300-01
Chr02	irgsp1_rep	CDS	5729202	5729284	.	-	2	Parent=Os02t0202300-01
Chr02	irgsp1_rep	CDS	5728969	5729091	.	-	0	Parent=Os02t0202300-01
Chr02	irgsp1_rep	CDS	5728624	5728848	.	-	0	Parent=Os02t0202300-01
Chr02	irgsp1_rep	CDS	5727721	5727810	.	-	0	Parent=Os02t0202300-01
Chr02	irgsp1_rep	mRNA	5736608	5738792	.	+	.	ID=Os02t0202400-01;Name=Os02t0202400-01;Locus_id=Os02g0202400;RAP-DB Gene Symbol Synonym(s)=BT1-1%2C OsBT1-1%2C OsEnS-29;RAP-DB Gene Name Synonym(s)=BRITTLE 1-1%2C Brittle-1-1%2C endosperm-specific gene 29;CGSNL Gene Symbol=BT1-1;CGSNL Gene Name=BRITTLE 1-1;Oryzabase Gene Symbol Synonym(s)=OsBT1-1%2C OsEnS-29%2C OsBT1%2C OsBt1%2C BT1%2C Bt1%2C OsBt1-1%2C shr3%2C OsBT1-2%2C BT1-2;Oryzabase Gene Name Synonym(s)=Brittle-1-1%2C endosperm-specific gene 29%2C BRITTLE1%2C shrunken3;Note=ADP-glucose transporter%2C Plastidic translocator%2C Starch synthesis during seed development;Transcript_evidence=AK107368;ORF_evidence=Q6Z782;GO=Biological Process: transmembrane transport (GO:0055085);InterPro=Mitochondrial carrier protein (IPR002067),Mitochondrial carrier domain (IPR023395),Mitochondrial substrate/solute carrier (IPR018108);NIAS_FLcDNA=002-127-B01;Manual Curation=March 3%2C 2016;Literature_PMID=26754668,16362329;Oryzabase=8712;Expression=AK107368;TENOR=Os02t0202400-01;KEGG=Os02t0202400-01
Chr02	irgsp1_rep	five_prime_UTR	5736608	5736677	.	+	.	Parent=Os02t0202400-01
Chr02	irgsp1_rep	five_prime_UTR	5736751	5736777	.	+	.	Parent=Os02t0202400-01
Chr02	irgsp1_rep	CDS	5736778	5737372	.	+	0	Parent=Os02t0202400-01
Chr02	irgsp1_rep	CDS	5737449	5737612	.	+	2	Parent=Os02t0202400-01
Chr02	irgsp1_rep	CDS	5737986	5738504	.	+	0	Parent=Os02t0202400-01
Chr02	irgsp1_rep	three_prime_UTR	5738505	5738792	.	+	.	Parent=Os02t0202400-01
Chr02	irgsp1_rep	mRNA	5740443	5741030	.	-	.	ID=Os02t0202500-01;Name=Os02t0202500-01;Locus_id=Os02g0202500;CGSNL Gene Symbol=ALBA2;CGSNL Gene Name=ACETYLATION LOWERS BINDING AFFINITY 2;Oryzabase Gene Symbol Synonym(s)=OsAlba2%2C Alba2;Oryzabase Gene Name Synonym(s)=acetylation lowers binding affinity protein 2%2C acetylation lowers binding affinity 2%2C Alba family protein 2;Note=Similar to nucleic acid binding.;Transcript_evidence=AK062327 (DDBJ%2C Best hit);ORF_evidence=NP_564325.1 (RefSeq);NIAS_FLcDNA=001-101-D05;Oryzabase=22402;Expression=AK062327;TENOR=Os02t0202500-01;KEGG=Os02t0202500-01
Chr02	irgsp1_rep	CDS	5740994	5741030	.	-	0	Parent=Os02t0202500-01
Chr02	irgsp1_rep	CDS	5740851	5740915	.	-	2	Parent=Os02t0202500-01
Chr02	irgsp1_rep	CDS	5740652	5740759	.	-	0	Parent=Os02t0202500-01
Chr02	irgsp1_rep	three_prime_UTR	5740443	5740651	.	-	.	Parent=Os02t0202500-01
Chr02	irgsp1_rep	mRNA	5744912	5748139	.	-	.	ID=Os02t0202600-01;Name=Os02t0202600-01;Locus_id=Os02g0202600;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK068376 (DDBJ%2C Best hit);ORF_evidence=XP_002880686.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Sel1-like (IPR006597),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013150O18;Expression=AK068376;TENOR=Os02t0202600-01;KEGG=Os02t0202600-01
Chr02	irgsp1_rep	five_prime_UTR	5748031	5748139	.	-	.	Parent=Os02t0202600-01
Chr02	irgsp1_rep	CDS	5747932	5748030	.	-	0	Parent=Os02t0202600-01
Chr02	irgsp1_rep	CDS	5747612	5747740	.	-	0	Parent=Os02t0202600-01
Chr02	irgsp1_rep	CDS	5747130	5747245	.	-	0	Parent=Os02t0202600-01
Chr02	irgsp1_rep	CDS	5746097	5746178	.	-	1	Parent=Os02t0202600-01
Chr02	irgsp1_rep	CDS	5745887	5745946	.	-	0	Parent=Os02t0202600-01
Chr02	irgsp1_rep	CDS	5745695	5745802	.	-	0	Parent=Os02t0202600-01
Chr02	irgsp1_rep	CDS	5745569	5745614	.	-	0	Parent=Os02t0202600-01
Chr02	irgsp1_rep	CDS	5745149	5745366	.	-	2	Parent=Os02t0202600-01
Chr02	irgsp1_rep	three_prime_UTR	5744912	5745148	.	-	.	Parent=Os02t0202600-01
Chr02	irgsp1_rep	mRNA	5744792	5748113	.	-	.	ID=Os02t0202600-03;Name=Os02t0202600-03;Locus_id=Os02g0202600;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK101844 (DDBJ%2C Best hit),AK099277 (DDBJ%2C Best hit);ORF_evidence=XP_002880686.1 (RefSeq);NIAS_FLcDNA=J033069H18,J023109C15;Expression=AK101844;TENOR=Os02t0202600-03;KEGG=Os02t0202600-03
Chr02	irgsp1_rep	five_prime_UTR	5748031	5748113	.	-	.	Parent=Os02t0202600-03
Chr02	irgsp1_rep	CDS	5747932	5748030	.	-	0	Parent=Os02t0202600-03
Chr02	irgsp1_rep	CDS	5747612	5747740	.	-	0	Parent=Os02t0202600-03
Chr02	irgsp1_rep	CDS	5747130	5747245	.	-	0	Parent=Os02t0202600-03
Chr02	irgsp1_rep	CDS	5746097	5746178	.	-	1	Parent=Os02t0202600-03
Chr02	irgsp1_rep	CDS	5745887	5745946	.	-	0	Parent=Os02t0202600-03
Chr02	irgsp1_rep	CDS	5745695	5745802	.	-	0	Parent=Os02t0202600-03
Chr02	irgsp1_rep	CDS	5745569	5745614	.	-	0	Parent=Os02t0202600-03
Chr02	irgsp1_rep	CDS	5745149	5745366	.	-	2	Parent=Os02t0202600-03
Chr02	irgsp1_rep	three_prime_UTR	5744792	5745148	.	-	.	Parent=Os02t0202600-03
Chr02	irgsp1_rep	mRNA	5750577	5753676	.	-	.	ID=Os02t0202800-01;Name=Os02t0202800-01;Locus_id=Os02g0202800;Note=FAR1 domain containing protein.;Transcript_evidence=AK102082 (DDBJ%2C Best hit),AK102813 (DDBJ%2C Best hit);ORF_evidence=B7ETN2 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=FAR1 DNA binding domain (IPR004330),Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);NIAS_FLcDNA=J033082K12,J033108L18;Expression=AK102082;TENOR=Os02t0202800-01;KEGG=Os02t0202800-01
Chr02	irgsp1_rep	five_prime_UTR	5753530	5753676	.	-	.	Parent=Os02t0202800-01
Chr02	irgsp1_rep	CDS	5753344	5753529	.	-	0	Parent=Os02t0202800-01
Chr02	irgsp1_rep	CDS	5751377	5752961	.	-	0	Parent=Os02t0202800-01
Chr02	irgsp1_rep	CDS	5750901	5751295	.	-	2	Parent=Os02t0202800-01
Chr02	irgsp1_rep	three_prime_UTR	5750577	5750900	.	-	.	Parent=Os02t0202800-01
Chr02	irgsp1_rep	mRNA	5753212	5753676	.	-	.	ID=Os02t0202800-02;Name=Os02t0202800-02;Locus_id=Os02g0202800;Note=Hypothetical conserved gene.;Transcript_evidence=AK109243 (DDBJ%2C Best hit);ORF_evidence=B8ADU4 (UniProt);NIAS_FLcDNA=002-156-G04;Expression=AK109243;TENOR=Os02t0202800-02;KEGG=Os02t0202800-02
Chr02	irgsp1_rep	five_prime_UTR	5753530	5753676	.	-	.	Parent=Os02t0202800-02
Chr02	irgsp1_rep	CDS	5753320	5753529	.	-	0	Parent=Os02t0202800-02
Chr02	irgsp1_rep	three_prime_UTR	5753212	5753319	.	-	.	Parent=Os02t0202800-02
Chr02	irgsp1_rep	mRNA	5755368	5757895	.	-	.	ID=Os02t0202900-00;Name=Os02t0202900-00;Locus_id=Os02g0202900;Oryzabase Gene Symbol Synonym(s)=OsFbox073%2C OsFbox73%2C Os_F0359;Oryzabase Gene Name Synonym(s)=F-box protein 73;Note=Similar to ring canal kelch.;Transcript_evidence=EU966796 (DDBJ);ORF_evidence=NP_001150390.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Kelch repeat type 1 (IPR006652),Galactose oxidase%2C beta-propeller (IPR015916),F-box domain%2C Skp2-like (IPR022364);Oryzabase=16870;TENOR=Os02t0202900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	5757835	5757895	.	-	.	Parent=Os02t0202900-00
Chr02	irgsp1_rep	CDS	5757808	5757834	.	-	0	Parent=Os02t0202900-00
Chr02	irgsp1_rep	CDS	5755371	5756654	.	-	0	Parent=Os02t0202900-00
Chr02	irgsp1_rep	three_prime_UTR	5755368	5755370	.	-	.	Parent=Os02t0202900-00
Chr02	irgsp1_rep	mRNA	5760034	5760495	.	-	.	ID=Os02t0202950-00;Name=Os02t0202950-00;Locus_id=Os02g0202950;Note=Similar to OSIGBa0125M19.6 protein.;Transcript_evidence=EU942860 (DDBJ);ORF_evidence=Q00RI0 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Legume lectin%2C beta chain (IPR001220),Concanavalin A-like lectin/glucanase (IPR008985),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320);TENOR=Os02t0202950-00
Chr02	irgsp1_rep	CDS	5760034	5760495	.	-	0	Parent=Os02t0202950-00
Chr02	irgsp1_rep	mRNA	5760788	5763128	.	-	.	ID=Os02t0203000-01;Name=Os02t0203000-01;Locus_id=Os02g0203000;RAP-DB Gene Symbol Synonym(s)=OsHY5L1%2C OsbZIP18;RAP-DB Gene Name Synonym(s)=LONG HYPOCOTYL 5 LIKE 1%2C HY5-like 1%2C bZIP transcription factor 18;CGSNL Gene Symbol=BZIP18;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 18;Oryzabase Gene Symbol Synonym(s)=OsbZIP18;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 18;Note=bZIP transcription factor%2C Homolog of Arabidopsis HY5 transcription factor%2C Photomorphogenesis;Transcript_evidence=AK365526 (barley);ORF_evidence=A0A0P0VG62;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA-binding transcription factor activity (GO:0003700);InterPro=Basic-leucine zipper domain (IPR004827);Manual Curation=June 14%2C 2019;Literature_PMID=31084872,28775143;Oryzabase=10107;TENOR=Os02t0203000-00
Chr02	irgsp1_rep	CDS	5762939	5763128	.	-	0	Parent=Os02t0203000-01
Chr02	irgsp1_rep	CDS	5762584	5762770	.	-	2	Parent=Os02t0203000-01
Chr02	irgsp1_rep	CDS	5761069	5761225	.	-	1	Parent=Os02t0203000-01
Chr02	irgsp1_rep	CDS	5760860	5760925	.	-	0	Parent=Os02t0203000-01
Chr02	irgsp1_rep	three_prime_UTR	5760788	5760859	.	-	.	Parent=Os02t0203000-01
Chr02	irgsp1_rep	mRNA	5775724	5777304	.	-	.	ID=Os02t0203200-01;Name=Os02t0203200-01;Locus_id=Os02g0203200;Note=Hypothetical protein.;Transcript_evidence=AK120020 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-186-C02;TENOR=Os02t0203200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	5776708	5777304	.	-	0	Parent=Os02t0203200-01
Chr02	irgsp1_rep	three_prime_UTR	5775724	5776707	.	-	.	Parent=Os02t0203200-01
Chr02	irgsp1_rep	mRNA	5775768	5777385	.	+	.	ID=Os02t0203300-00;Name=Os02t0203300-00;Locus_id=Os02g0203300;Note=Similar to UDP-glycosyltransferase UGT75E3.;Transcript_evidence=AK334821 (DDBJ);ORF_evidence=C4MF48 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os02t0203300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	5775768	5776653	.	+	0	Parent=Os02t0203300-00
Chr02	irgsp1_rep	CDS	5776754	5777385	.	+	2	Parent=Os02t0203300-00
Chr02	irgsp1_rep	mRNA	5785325	5787430	.	+	.	ID=Os02t0203401-00;Name=Os02t0203401-00;Locus_id=Os02g0203401;Note=Hypothetical gene.;Transcript_evidence=BT054351 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0203401-00;KEGG=Os02t0203401-00
Chr02	irgsp1_rep	five_prime_UTR	5785325	5785952	.	+	.	Parent=Os02t0203401-00
Chr02	irgsp1_rep	five_prime_UTR	5786040	5786990	.	+	.	Parent=Os02t0203401-00
Chr02	irgsp1_rep	CDS	5786991	5787392	.	+	0	Parent=Os02t0203401-00
Chr02	irgsp1_rep	three_prime_UTR	5787393	5787430	.	+	.	Parent=Os02t0203401-00
Chr02	irgsp1_rep	mRNA	5785295	5788769	.	-	.	ID=Os02t0203500-01;Name=Os02t0203500-01;Locus_id=Os02g0203500;RAP-DB Gene Symbol Synonym(s)=RLS1;RAP-DB Gene Name Synonym(s)=RAPID LEAF SENESCENCE 1%2C rapid leaf senescence 1;Oryzabase Gene Symbol Synonym(s)=RLS1%2C LRD43;Oryzabase Gene Name Synonym(s)=lesion resembling disease 43%2C rapid leaf senescence 1;Note=NB (nucleotide-binding site)-containing protein with an ARM (armadillo) domain%2C Chloroplast degradation during leaf senescence;Transcript_evidence=Inferred from literature;ORF_evidence=Q6Z6E7;GO=Molecular Function: binding (GO:0005488),Molecular Function: ADP binding (GO:0043531);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),NB-ARC (IPR002182),Armadillo-type fold (IPR016024),Armadillo-like helical (IPR011989);Manual Curation=May 11%2C 2017;Literature_PMID=21980143;Oryzabase=21607;TENOR=Os02t0203500-00;KEGG=Os02t0203500-00
Chr02	irgsp1_rep	CDS	5787723	5788769	.	-	0	Parent=Os02t0203500-01
Chr02	irgsp1_rep	CDS	5785295	5787370	.	-	0	Parent=Os02t0203500-01
Chr02	irgsp1_rep	mRNA	5798925	5806347	.	-	.	ID=Os02t0203700-01;Name=Os02t0203700-01;Locus_id=Os02g0203700;Oryzabase Gene Symbol Synonym(s)=SRZ1;Oryzabase Gene Name Synonym(s)=stress repressive zinc finger protein 1;Note=Similar to Testis expressed sequence 13A protein.;Transcript_evidence=AK072940 (DDBJ%2C Best hit);ORF_evidence=B6T2W6 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RanBP2-type (IPR001876);NIAS_FLcDNA=J023149B06;Oryzabase=15131;Expression=AK072940;TENOR=Os02t0203700-01;KEGG=Os02t0203700-01
Chr02	irgsp1_rep	five_prime_UTR	5806220	5806347	.	-	.	Parent=Os02t0203700-01
Chr02	irgsp1_rep	five_prime_UTR	5800579	5800589	.	-	.	Parent=Os02t0203700-01
Chr02	irgsp1_rep	CDS	5800163	5800578	.	-	0	Parent=Os02t0203700-01
Chr02	irgsp1_rep	CDS	5799377	5799447	.	-	1	Parent=Os02t0203700-01
Chr02	irgsp1_rep	CDS	5799260	5799273	.	-	2	Parent=Os02t0203700-01
Chr02	irgsp1_rep	three_prime_UTR	5798925	5799259	.	-	.	Parent=Os02t0203700-01
Chr02	irgsp1_rep	mRNA	5798921	5800880	.	-	.	ID=Os02t0203700-02;Name=Os02t0203700-02;Locus_id=Os02g0203700;Oryzabase Gene Symbol Synonym(s)=SRZ1;Oryzabase Gene Name Synonym(s)=stress repressive zinc finger protein 1;Note=Similar to Testis expressed sequence 13A protein.;Transcript_evidence=AK060128 (DDBJ%2C Best hit),AK104409 (DDBJ%2C Best hit);ORF_evidence=B6T2W6 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RanBP2-type (IPR001876);NIAS_FLcDNA=006-309-A05,006-203-G02;Oryzabase=15131;TENOR=Os02t0203700-02
Chr02	irgsp1_rep	five_prime_UTR	5800811	5800880	.	-	.	Parent=Os02t0203700-02
Chr02	irgsp1_rep	five_prime_UTR	5800579	5800589	.	-	.	Parent=Os02t0203700-02
Chr02	irgsp1_rep	CDS	5800163	5800578	.	-	0	Parent=Os02t0203700-02
Chr02	irgsp1_rep	CDS	5799377	5799447	.	-	1	Parent=Os02t0203700-02
Chr02	irgsp1_rep	CDS	5799260	5799273	.	-	2	Parent=Os02t0203700-02
Chr02	irgsp1_rep	three_prime_UTR	5798921	5799259	.	-	.	Parent=Os02t0203700-02
Chr02	irgsp1_rep	mRNA	5812094	5813493	.	-	.	ID=Os02t0204000-01;Name=Os02t0204000-01;Locus_id=Os02g0204000;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK066727 (DDBJ%2C Best hit);ORF_evidence=NP_001147153.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide TPR2 (IPR013105),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J013075K01;Expression=AK066727;TENOR=Os02t0204000-01;KEGG=Os02t0204000-01
Chr02	irgsp1_rep	five_prime_UTR	5813459	5813493	.	-	.	Parent=Os02t0204000-01
Chr02	irgsp1_rep	CDS	5812730	5813458	.	-	0	Parent=Os02t0204000-01
Chr02	irgsp1_rep	three_prime_UTR	5812729	5812729	.	-	.	Parent=Os02t0204000-01
Chr02	irgsp1_rep	three_prime_UTR	5812094	5812397	.	-	.	Parent=Os02t0204000-01
Chr02	irgsp1_rep	mRNA	5824528	5825115	.	-	.	ID=Os02t0204200-00;Name=Os02t0204200-00;Locus_id=Os02g0204200;Note=Similar to TPR domain containing protein.;Transcript_evidence=EU953595 (DDBJ);ORF_evidence=NP_001147153.1 (RefSeq);TENOR=Os02t0204200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	5824933	5825115	.	-	.	Parent=Os02t0204200-00
Chr02	irgsp1_rep	CDS	5824528	5824932	.	-	0	Parent=Os02t0204200-00
Chr02	irgsp1_rep	mRNA	5826284	5827230	.	+	.	ID=Os02t0204201-00;Name=Os02t0204201-00;Locus_id=Os02g0204201;Note=Hypothetical gene.;Transcript_evidence=CT835333 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os02t0204201-00;KEGG=Os02t0204201-00
Chr02	irgsp1_rep	five_prime_UTR	5826284	5826285	.	+	.	Parent=Os02t0204201-00
Chr02	irgsp1_rep	CDS	5826286	5826576	.	+	0	Parent=Os02t0204201-00
Chr02	irgsp1_rep	three_prime_UTR	5826577	5827230	.	+	.	Parent=Os02t0204201-00
Chr02	irgsp1_rep	mRNA	5832651	5834374	.	+	.	ID=Os02t0204300-01;Name=Os02t0204300-01;Locus_id=Os02g0204300;Note=Similar to Fgenesh protein 41.;Transcript_evidence=AK068982 (DDBJ%2C Best hit);ORF_evidence=Q20CE0 (UniProt);NIAS_FLcDNA=J023002I11;TENOR=Os02t0204300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	5832651	5832662	.	+	.	Parent=Os02t0204300-01
Chr02	irgsp1_rep	CDS	5832663	5833339	.	+	0	Parent=Os02t0204300-01
Chr02	irgsp1_rep	CDS	5833416	5833499	.	+	1	Parent=Os02t0204300-01
Chr02	irgsp1_rep	CDS	5833694	5834036	.	+	1	Parent=Os02t0204300-01
Chr02	irgsp1_rep	three_prime_UTR	5834037	5834374	.	+	.	Parent=Os02t0204300-01
Chr02	irgsp1_rep	mRNA	5835504	5838694	.	+	.	ID=Os02t0204400-00;Name=Os02t0204400-00;Locus_id=Os02g0204400;Oryzabase Gene Name Synonym(s)=(6-4) DNA photolyase;Note=Similar to (6-4)DNA photolyase.;Transcript_evidence=AK360897 (DDBJ);ORF_evidence=Q0E2Y1 (UniProt);GO=Biological Process: DNA repair (GO:0006281),Molecular Function: DNA photolyase activity (GO:0003913);InterPro=DNA photolyase%2C FAD-binding/CryptoChrome%2C C-terminal (IPR005101),DNA photolyase%2C N-terminal (IPR006050),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);Oryzabase=21436;TENOR=Os02t0204400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	5835504	5835516	.	+	.	Parent=Os02t0204400-00
Chr02	irgsp1_rep	CDS	5835517	5835861	.	+	0	Parent=Os02t0204400-00
Chr02	irgsp1_rep	CDS	5835989	5836060	.	+	0	Parent=Os02t0204400-00
Chr02	irgsp1_rep	CDS	5836140	5836220	.	+	0	Parent=Os02t0204400-00
Chr02	irgsp1_rep	CDS	5836320	5836490	.	+	0	Parent=Os02t0204400-00
Chr02	irgsp1_rep	CDS	5836576	5836647	.	+	0	Parent=Os02t0204400-00
Chr02	irgsp1_rep	CDS	5836803	5836889	.	+	0	Parent=Os02t0204400-00
Chr02	irgsp1_rep	CDS	5836986	5837084	.	+	0	Parent=Os02t0204400-00
Chr02	irgsp1_rep	CDS	5837191	5837274	.	+	0	Parent=Os02t0204400-00
Chr02	irgsp1_rep	CDS	5837351	5837437	.	+	0	Parent=Os02t0204400-00
Chr02	irgsp1_rep	CDS	5837578	5837649	.	+	0	Parent=Os02t0204400-00
Chr02	irgsp1_rep	CDS	5837912	5838025	.	+	0	Parent=Os02t0204400-00
Chr02	irgsp1_rep	CDS	5838127	5838214	.	+	0	Parent=Os02t0204400-00
Chr02	irgsp1_rep	CDS	5838293	5838388	.	+	2	Parent=Os02t0204400-00
Chr02	irgsp1_rep	CDS	5838507	5838694	.	+	2	Parent=Os02t0204400-00
Chr02	irgsp1_rep	mRNA	5841792	5846649	.	+	.	ID=Os02t0204500-01;Name=Os02t0204500-01;Locus_id=Os02g0204500;Note=Hypothetical conserved gene.;Transcript_evidence=AK120670 (DDBJ%2C Best hit);ORF_evidence=B7EEL6 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=EMSY N-terminal (IPR005491),Agenet (IPR008395),Tudor-like%2C plant (IPR014002);NIAS_FLcDNA=J013160F14;Expression=AK120670;TENOR=Os02t0204500-01;KEGG=Os02t0204500-01
Chr02	irgsp1_rep	five_prime_UTR	5841792	5841980	.	+	.	Parent=Os02t0204500-01
Chr02	irgsp1_rep	five_prime_UTR	5843006	5843028	.	+	.	Parent=Os02t0204500-01
Chr02	irgsp1_rep	CDS	5843029	5843427	.	+	0	Parent=Os02t0204500-01
Chr02	irgsp1_rep	CDS	5843699	5844532	.	+	0	Parent=Os02t0204500-01
Chr02	irgsp1_rep	three_prime_UTR	5844533	5846649	.	+	.	Parent=Os02t0204500-01
Chr02	irgsp1_rep	mRNA	5841853	5844737	.	+	.	ID=Os02t0204500-02;Name=Os02t0204500-02;Locus_id=Os02g0204500;Note=Hypothetical conserved gene.;Transcript_evidence=AK070020 (DDBJ%2C Best hit);ORF_evidence=B7EEL6 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=EMSY N-terminal (IPR005491),Agenet (IPR008395),Tudor-like%2C plant (IPR014002);NIAS_FLcDNA=J023038I16;Expression=AK070020;TENOR=Os02t0204500-02;KEGG=Os02t0204500-02
Chr02	irgsp1_rep	five_prime_UTR	5841853	5841980	.	+	.	Parent=Os02t0204500-02
Chr02	irgsp1_rep	five_prime_UTR	5843006	5843028	.	+	.	Parent=Os02t0204500-02
Chr02	irgsp1_rep	CDS	5843029	5843427	.	+	0	Parent=Os02t0204500-02
Chr02	irgsp1_rep	CDS	5843699	5844532	.	+	0	Parent=Os02t0204500-02
Chr02	irgsp1_rep	three_prime_UTR	5844533	5844737	.	+	.	Parent=Os02t0204500-02
Chr02	irgsp1_rep	mRNA	5841856	5847294	.	+	.	ID=Os02t0204500-03;Name=Os02t0204500-03;Locus_id=Os02g0204500;Note=Agenet domain containing protein.;Transcript_evidence=AK068229 (DDBJ%2C Best hit);ORF_evidence=Q6Z6D8 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=Agenet (IPR008395),Tudor-like%2C plant (IPR014002);NIAS_FLcDNA=J013149J03;TENOR=Os02t0204500-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	5841856	5841980	.	+	.	Parent=Os02t0204500-03
Chr02	irgsp1_rep	five_prime_UTR	5843003	5843028	.	+	.	Parent=Os02t0204500-03
Chr02	irgsp1_rep	CDS	5843029	5843427	.	+	0	Parent=Os02t0204500-03
Chr02	irgsp1_rep	CDS	5843699	5843974	.	+	0	Parent=Os02t0204500-03
Chr02	irgsp1_rep	CDS	5844160	5844177	.	+	0	Parent=Os02t0204500-03
Chr02	irgsp1_rep	three_prime_UTR	5844178	5844666	.	+	.	Parent=Os02t0204500-03
Chr02	irgsp1_rep	three_prime_UTR	5845303	5845416	.	+	.	Parent=Os02t0204500-03
Chr02	irgsp1_rep	three_prime_UTR	5846327	5847294	.	+	.	Parent=Os02t0204500-03
Chr02	irgsp1_rep	mRNA	5863278	5865569	.	-	.	ID=Os02t0204700-00;Name=Os02t0204700-00;Locus_id=Os02g0204700;CGSNL Gene Symbol=CYP734A2;CGSNL Gene Name=CYTOCHROME P450 HYDROXYLASE 734A2;Oryzabase Gene Symbol Synonym(s)=OsCYP734A2;Oryzabase Gene Name Synonym(s)=CytoChrome P450 734A2;Note=CytoChrome P450 family protein.;Transcript_evidence=AB488666 (DDBJ%2C Best hit);ORF_evidence=B9X285 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);Oryzabase=14295;TENOR=Os02t0204700-00;KEGG=Os02t0204700-00 (EC:1.14.13.30)
Chr02	irgsp1_rep	CDS	5865248	5865569	.	-	0	Parent=Os02t0204700-00
Chr02	irgsp1_rep	CDS	5864727	5864950	.	-	2	Parent=Os02t0204700-00
Chr02	irgsp1_rep	CDS	5864368	5864618	.	-	0	Parent=Os02t0204700-00
Chr02	irgsp1_rep	CDS	5863864	5864281	.	-	1	Parent=Os02t0204700-00
Chr02	irgsp1_rep	CDS	5863278	5863736	.	-	0	Parent=Os02t0204700-00
Chr02	irgsp1_rep	mRNA	5907033	5909601	.	-	.	ID=Os02t0205000-01;Name=Os02t0205000-01;Locus_id=Os02g0205000;Note=Ribosomal protein L19 family protein.;Transcript_evidence=AK073514 (DDBJ%2C Best hit),AK060003 (DDBJ%2C Best hit);ORF_evidence=NP_192900.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L19 (IPR001857),Translation protein SH3-like (IPR008991);NIAS_FLcDNA=J033040E14,006-302-A07;Expression=AK073514;TENOR=Os02t0205000-01;KEGG=Os02t0205000-01
Chr02	irgsp1_rep	five_prime_UTR	5909492	5909601	.	-	.	Parent=Os02t0205000-01
Chr02	irgsp1_rep	five_prime_UTR	5909189	5909215	.	-	.	Parent=Os02t0205000-01
Chr02	irgsp1_rep	CDS	5909036	5909188	.	-	0	Parent=Os02t0205000-01
Chr02	irgsp1_rep	CDS	5908733	5908924	.	-	0	Parent=Os02t0205000-01
Chr02	irgsp1_rep	CDS	5908542	5908628	.	-	0	Parent=Os02t0205000-01
Chr02	irgsp1_rep	CDS	5908328	5908461	.	-	0	Parent=Os02t0205000-01
Chr02	irgsp1_rep	CDS	5907355	5907457	.	-	1	Parent=Os02t0205000-01
Chr02	irgsp1_rep	three_prime_UTR	5907033	5907354	.	-	.	Parent=Os02t0205000-01
Chr02	irgsp1_rep	mRNA	5910515	5912009	.	+	.	ID=Os02t0205100-01;Name=Os02t0205100-01;Locus_id=Os02g0205100;Note=Conserved hypothetical protein.;Transcript_evidence=AK242708 (DDBJ%2C Best hit);ORF_evidence=B9FSE2 (UniProt);NIAS_FLcDNA=J090040N01;TENOR=Os02t0205100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	5910515	5911681	.	+	.	Parent=Os02t0205100-01
Chr02	irgsp1_rep	CDS	5911682	5911924	.	+	0	Parent=Os02t0205100-01
Chr02	irgsp1_rep	three_prime_UTR	5911925	5912009	.	+	.	Parent=Os02t0205100-01
Chr02	irgsp1_rep	mRNA	5912613	5914192	.	-	.	ID=Os02t0205200-01;Name=Os02t0205200-01;Locus_id=Os02g0205200;Note=Similar to Unidentified precursor.;Transcript_evidence=AK106819 (DDBJ%2C Best hit);ORF_evidence=Q43557 (UniProt);InterPro=Protein of unknown function DUF642 (IPR006946);NIAS_FLcDNA=002-116-D06;Expression=AK106819;TENOR=Os02t0205200-01;KEGG=Os02t0205200-01
Chr02	irgsp1_rep	five_prime_UTR	5914000	5914192	.	-	.	Parent=Os02t0205200-01
Chr02	irgsp1_rep	CDS	5913453	5913999	.	-	0	Parent=Os02t0205200-01
Chr02	irgsp1_rep	CDS	5912821	5913371	.	-	2	Parent=Os02t0205200-01
Chr02	irgsp1_rep	three_prime_UTR	5912613	5912820	.	-	.	Parent=Os02t0205200-01
Chr02	irgsp1_rep	mRNA	5918931	5923654	.	-	.	ID=Os02t0205300-01;Name=Os02t0205300-01;Locus_id=Os02g0205300;CGSNL Gene Symbol=RPT6;CGSNL Gene Name=19S REGULATORY PARTICLE ATPASE SUBUNIT 6;Oryzabase Gene Symbol Synonym(s)=OsRpt6%2C Rpt6;Oryzabase Gene Name Synonym(s)=19S regulatory particle ATPase subunit 6%2C RP triple A-ATPase 6;Note=Similar to TAT-binding protein homolog (Fragment).;Transcript_evidence=AK102286 (DDBJ%2C Best hit);ORF_evidence=Q9FEB6 (UniProt);GO=Biological Process: protein catabolic process (GO:0030163),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960),26S proteasome subunit P45 (IPR005937);NIAS_FLcDNA=J033089I16;Oryzabase=20559;TENOR=Os02t0205300-01
Chr02	irgsp1_rep	five_prime_UTR	5923500	5923654	.	-	.	Parent=Os02t0205300-01
Chr02	irgsp1_rep	CDS	5923283	5923499	.	-	0	Parent=Os02t0205300-01
Chr02	irgsp1_rep	CDS	5922038	5922135	.	-	2	Parent=Os02t0205300-01
Chr02	irgsp1_rep	CDS	5921153	5921377	.	-	0	Parent=Os02t0205300-01
Chr02	irgsp1_rep	CDS	5921017	5921079	.	-	0	Parent=Os02t0205300-01
Chr02	irgsp1_rep	CDS	5920774	5920937	.	-	0	Parent=Os02t0205300-01
Chr02	irgsp1_rep	CDS	5920486	5920642	.	-	1	Parent=Os02t0205300-01
Chr02	irgsp1_rep	CDS	5920303	5920401	.	-	0	Parent=Os02t0205300-01
Chr02	irgsp1_rep	CDS	5920105	5920215	.	-	0	Parent=Os02t0205300-01
Chr02	irgsp1_rep	CDS	5919271	5919411	.	-	0	Parent=Os02t0205300-01
Chr02	irgsp1_rep	three_prime_UTR	5918931	5919270	.	-	.	Parent=Os02t0205300-01
Chr02	irgsp1_rep	mRNA	5918949	5923555	.	-	.	ID=Os02t0205300-02;Name=Os02t0205300-02;Locus_id=Os02g0205300;CGSNL Gene Symbol=RPT6;CGSNL Gene Name=19S REGULATORY PARTICLE ATPASE SUBUNIT 6;Oryzabase Gene Symbol Synonym(s)=OsRpt6%2C Rpt6;Oryzabase Gene Name Synonym(s)=19S regulatory particle ATPase subunit 6%2C RP triple A-ATPase 6;Note=Similar to TAT-binding protein homolog (Fragment).;Transcript_evidence=AK061762 (DDBJ%2C Best hit),AK106217 (DDBJ%2C Best hit);ORF_evidence=Q9FEB6 (UniProt);GO=Biological Process: protein catabolic process (GO:0030163),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960),26S proteasome subunit P45 (IPR005937);NIAS_FLcDNA=001-039-B03,001-208-H03;Oryzabase=20559;TENOR=Os02t0205300-02
Chr02	irgsp1_rep	five_prime_UTR	5923500	5923555	.	-	.	Parent=Os02t0205300-02
Chr02	irgsp1_rep	CDS	5923283	5923499	.	-	0	Parent=Os02t0205300-02
Chr02	irgsp1_rep	CDS	5922038	5922135	.	-	2	Parent=Os02t0205300-02
Chr02	irgsp1_rep	CDS	5921153	5921377	.	-	0	Parent=Os02t0205300-02
Chr02	irgsp1_rep	CDS	5921017	5921079	.	-	0	Parent=Os02t0205300-02
Chr02	irgsp1_rep	CDS	5920774	5920937	.	-	0	Parent=Os02t0205300-02
Chr02	irgsp1_rep	CDS	5920486	5920642	.	-	1	Parent=Os02t0205300-02
Chr02	irgsp1_rep	CDS	5920303	5920401	.	-	0	Parent=Os02t0205300-02
Chr02	irgsp1_rep	CDS	5920105	5920215	.	-	0	Parent=Os02t0205300-02
Chr02	irgsp1_rep	CDS	5919271	5919411	.	-	0	Parent=Os02t0205300-02
Chr02	irgsp1_rep	three_prime_UTR	5918949	5919270	.	-	.	Parent=Os02t0205300-02
Chr02	irgsp1_rep	mRNA	5924727	5930096	.	+	.	ID=Os02t0205400-01;Name=Os02t0205400-01;Locus_id=Os02g0205400;Oryzabase Gene Symbol Synonym(s)=OsWD40-38;Note=WD40 repeat%2C region domain containing protein.;Transcript_evidence=AK101434 (DDBJ%2C Best hit);ORF_evidence=B6T3R6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J033038M11;Oryzabase=10719;Expression=AK101434;TENOR=Os02t0205400-01;KEGG=Os02t0205400-01
Chr02	irgsp1_rep	five_prime_UTR	5924727	5925047	.	+	.	Parent=Os02t0205400-01
Chr02	irgsp1_rep	CDS	5925048	5925165	.	+	0	Parent=Os02t0205400-01
Chr02	irgsp1_rep	CDS	5926133	5926268	.	+	2	Parent=Os02t0205400-01
Chr02	irgsp1_rep	CDS	5926832	5926913	.	+	1	Parent=Os02t0205400-01
Chr02	irgsp1_rep	CDS	5927772	5927947	.	+	0	Parent=Os02t0205400-01
Chr02	irgsp1_rep	CDS	5928594	5928731	.	+	1	Parent=Os02t0205400-01
Chr02	irgsp1_rep	CDS	5928817	5928956	.	+	1	Parent=Os02t0205400-01
Chr02	irgsp1_rep	CDS	5929546	5929784	.	+	2	Parent=Os02t0205400-01
Chr02	irgsp1_rep	three_prime_UTR	5929785	5930096	.	+	.	Parent=Os02t0205400-01
Chr02	irgsp1_rep	mRNA	5930298	5933077	.	-	.	ID=Os02t0205500-01;Name=Os02t0205500-01;Locus_id=Os02g0205500;Oryzabase Gene Symbol Synonym(s)=KCS;Oryzabase Gene Name Synonym(s)=3-ketoacyl-CoA synthase;Note=Similar to Fatty acid elongase 1.;Transcript_evidence=AK067907 (DDBJ%2C Best hit);ORF_evidence=A2X281 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: metabolic process (GO:0008152),Biological Process: lipid biosynthetic process (GO:0008610),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Very-long-chain 3-ketoacyl-CoA synthase (IPR012392),FAE1/Type III polyketide synthase-like protein (IPR013601),3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (IPR013747),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);NIAS_FLcDNA=J013127I02;Oryzabase=20200;Expression=AK067907;TENOR=Os02t0205500-01;KEGG=Os02t0205500-01
Chr02	irgsp1_rep	five_prime_UTR	5932971	5933077	.	-	.	Parent=Os02t0205500-01
Chr02	irgsp1_rep	five_prime_UTR	5932352	5932357	.	-	.	Parent=Os02t0205500-01
Chr02	irgsp1_rep	CDS	5931042	5932351	.	-	0	Parent=Os02t0205500-01
Chr02	irgsp1_rep	CDS	5930553	5930802	.	-	1	Parent=Os02t0205500-01
Chr02	irgsp1_rep	three_prime_UTR	5930298	5930552	.	-	.	Parent=Os02t0205500-01
Chr02	irgsp1_rep	mRNA	5930548	5932343	.	+	.	ID=Os02t0205700-00;Name=Os02t0205700-00;Locus_id=Os02g0205700;Note=Hypothetical protein.;Transcript_evidence=tplb0055l20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0205700-00
Chr02	irgsp1_rep	five_prime_UTR	5930548	5930790	.	+	.	Parent=Os02t0205700-00
Chr02	irgsp1_rep	five_prime_UTR	5931026	5931224	.	+	.	Parent=Os02t0205700-00
Chr02	irgsp1_rep	CDS	5931225	5931659	.	+	0	Parent=Os02t0205700-00
Chr02	irgsp1_rep	three_prime_UTR	5931660	5932343	.	+	.	Parent=Os02t0205700-00
Chr02	irgsp1_rep	mRNA	5955018	5957276	.	-	.	ID=Os02t0206100-01;Name=Os02t0206100-01;Locus_id=Os02g0206100;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK066469 (DDBJ%2C Best hit);ORF_evidence=C4MF42 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J013067D15;Expression=AK066469;TENOR=Os02t0206100-01;KEGG=Os02t0206100-01
Chr02	irgsp1_rep	five_prime_UTR	5957239	5957276	.	-	.	Parent=Os02t0206100-01
Chr02	irgsp1_rep	CDS	5955763	5957238	.	-	0	Parent=Os02t0206100-01
Chr02	irgsp1_rep	three_prime_UTR	5955727	5955762	.	-	.	Parent=Os02t0206100-01
Chr02	irgsp1_rep	three_prime_UTR	5955018	5955465	.	-	.	Parent=Os02t0206100-01
Chr02	irgsp1_rep	mRNA	5955466	5957257	.	-	.	ID=Os02t0206100-02;Name=Os02t0206100-02;Locus_id=Os02g0206100;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK066593 (DDBJ%2C Best hit);ORF_evidence=C4MF42 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J013073P05;Expression=AK066593;TENOR=Os02t0206100-02;KEGG=Os02t0206100-02
Chr02	irgsp1_rep	five_prime_UTR	5957239	5957257	.	-	.	Parent=Os02t0206100-02
Chr02	irgsp1_rep	CDS	5955763	5957238	.	-	0	Parent=Os02t0206100-02
Chr02	irgsp1_rep	three_prime_UTR	5955466	5955762	.	-	.	Parent=Os02t0206100-02
Chr02	irgsp1_rep	mRNA	5965657	5967648	.	-	.	ID=Os02t0206400-00;Name=Os02t0206400-00;Locus_id=Os02g0206400;Note=Similar to UDP-glycosyltransferase UGT99C4.;Transcript_evidence=ab initio prediction;ORF_evidence=C4MF42 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os02t0206400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	5966890	5967648	.	-	0	Parent=Os02t0206400-00
Chr02	irgsp1_rep	CDS	5965657	5965677	.	-	0	Parent=Os02t0206400-00
Chr02	irgsp1_rep	mRNA	5966887	5967641	.	+	.	ID=Os02t0206550-00;Name=Os02t0206550-00;Locus_id=Os02g0206550;Note=Hypothetical protein.;Transcript_evidence=BT068360 (DDBJ);ORF_evidence=GeneMark;TENOR=Os02t0206550-00
Chr02	irgsp1_rep	five_prime_UTR	5966887	5967132	.	+	.	Parent=Os02t0206550-00
Chr02	irgsp1_rep	CDS	5967133	5967641	.	+	0	Parent=Os02t0206550-00
Chr02	irgsp1_rep	mRNA	5978219	5979957	.	-	.	ID=Os02t0206700-01;Name=Os02t0206700-01;Locus_id=Os02g0206700;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK242442 (DDBJ%2C Best hit);ORF_evidence=C4MF42 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J080094G19;TENOR=Os02t0206700-01;KEGG=Os02t0206700-01
Chr02	irgsp1_rep	five_prime_UTR	5979904	5979957	.	-	.	Parent=Os02t0206700-01
Chr02	irgsp1_rep	CDS	5978398	5979903	.	-	0	Parent=Os02t0206700-01
Chr02	irgsp1_rep	three_prime_UTR	5978219	5978397	.	-	.	Parent=Os02t0206700-01
Chr02	irgsp1_rep	mRNA	5995202	5999429	.	+	.	ID=Os02t0206833-01;Name=Os02t0206833-01;Locus_id=Os02g0206833;Note=Conserved hypothetical protein.;Transcript_evidence=AK288885 (DDBJ%2C Best hit);ORF_evidence=C5NNV4 (UniProt);NIAS_FLcDNA=J090079K20;TENOR=Os02t0206833-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	5995202	5996522	.	+	.	Parent=Os02t0206833-01
Chr02	irgsp1_rep	CDS	5996523	5996735	.	+	0	Parent=Os02t0206833-01
Chr02	irgsp1_rep	three_prime_UTR	5996736	5999429	.	+	.	Parent=Os02t0206833-01
Chr02	irgsp1_rep	mRNA	6007623	6009551	.	+	.	ID=Os02t0207100-01;Name=Os02t0207100-01;Locus_id=Os02g0207100;Note=Similar to UDP-glycosyltransferase UGT99C4.;Transcript_evidence=AK119766 (DDBJ%2C Best hit);ORF_evidence=C4MF42 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=002-172-D06;TENOR=Os02t0207100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	6007623	6009347	.	+	0	Parent=Os02t0207100-01
Chr02	irgsp1_rep	three_prime_UTR	6009348	6009551	.	+	.	Parent=Os02t0207100-01
Chr02	irgsp1_rep	mRNA	6014063	6016083	.	+	.	ID=Os02t0207300-01;Name=Os02t0207300-01;Locus_id=Os02g0207300;Note=Non-protein coding transcript.;Transcript_evidence=AK064602 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-112-H07;TENOR=Os02t0207300-01
Chr02	irgsp1_rep	exon	6014063	6014559	.	+	.	Parent=Os02t0207300-01
Chr02	irgsp1_rep	exon	6015602	6016083	.	+	.	Parent=Os02t0207300-01
Chr02	irgsp1_rep	mRNA	6017329	6018933	.	-	.	ID=Os02t0207400-00;Name=Os02t0207400-00;Locus_id=Os02g0207400;Oryzabase Gene Name Synonym(s)=UDP-glycosyltransferase 73C6-like;Note=Similar to UDP-glycosyltransferase UGT99C4.;Transcript_evidence=ab initio prediction;ORF_evidence=C4MF42 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);Oryzabase=23282;TENOR=Os02t0207400-00;KEGG=Os02t0207400-00
Chr02	irgsp1_rep	CDS	6017329	6018933	.	-	0	Parent=Os02t0207400-00
Chr02	irgsp1_rep	mRNA	6020675	6021256	.	+	.	ID=Os02t0207500-01;Name=Os02t0207500-01;Locus_id=Os02g0207500;Note=Hypothetical gene.;Transcript_evidence=AK063064 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-110-G03;TENOR=Os02t0207500-01
Chr02	irgsp1_rep	five_prime_UTR	6020675	6021012	.	+	.	Parent=Os02t0207500-01
Chr02	irgsp1_rep	CDS	6021013	6021256	.	+	0	Parent=Os02t0207500-01
Chr02	irgsp1_rep	mRNA	6038414	6039642	.	+	.	ID=Os02t0207800-01;Name=Os02t0207800-01;Locus_id=Os02g0207800;Note=Hypothetical protein.;Transcript_evidence=AK111370 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-182-A04;Expression=AK111370;TENOR=Os02t0207800-01;KEGG=Os02t0207800-01
Chr02	irgsp1_rep	five_prime_UTR	6038414	6038604	.	+	.	Parent=Os02t0207800-01
Chr02	irgsp1_rep	CDS	6038605	6039012	.	+	0	Parent=Os02t0207800-01
Chr02	irgsp1_rep	three_prime_UTR	6039013	6039642	.	+	.	Parent=Os02t0207800-01
Chr02	irgsp1_rep	mRNA	6038222	6039551	.	-	.	ID=Os02t0207900-01;Name=Os02t0207900-01;Locus_id=Os02g0207900;Note=Similar to esterase/lipase/thioesterase family protein.;Transcript_evidence=AK241291 (DDBJ%2C Best hit);ORF_evidence=NP_175685.1 (RefSeq);InterPro=Alpha/beta hydrolase fold-1 (IPR000073);NIAS_FLcDNA=J065137P13;TENOR=Os02t0207900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	6039471	6039551	.	-	.	Parent=Os02t0207900-01
Chr02	irgsp1_rep	CDS	6038439	6039470	.	-	0	Parent=Os02t0207900-01
Chr02	irgsp1_rep	three_prime_UTR	6038222	6038438	.	-	.	Parent=Os02t0207900-01
Chr02	irgsp1_rep	mRNA	6057100	6060267	.	+	.	ID=Os02t0208100-01;Name=Os02t0208100-01;Locus_id=Os02g0208100;CGSNL Gene Symbol=NTT2;CGSNL Gene Name=PLASTIDIC NUCLEOTIDE TRANSPORT PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsNTT2;Note=Similar to plastidic ATP/ADP-transporter.;Transcript_evidence=AK243677 (DDBJ%2C Best hit);ORF_evidence=NP_001147851.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Cellular Component: integral to membrane (GO:0016021),Molecular Function: ATP:ADP antiporter activity (GO:0005471),Molecular Function: ATP binding (GO:0005524);InterPro=ADP/ATP carrier protein (IPR004667);NIAS_FLcDNA=J100090E08;Oryzabase=8726;TENOR=Os02t0208100-01;KEGG=Os02t0208100-01
Chr02	irgsp1_rep	five_prime_UTR	6057100	6057180	.	+	.	Parent=Os02t0208100-01
Chr02	irgsp1_rep	CDS	6057181	6057924	.	+	0	Parent=Os02t0208100-01
Chr02	irgsp1_rep	CDS	6058173	6058439	.	+	0	Parent=Os02t0208100-01
Chr02	irgsp1_rep	CDS	6058522	6058665	.	+	0	Parent=Os02t0208100-01
Chr02	irgsp1_rep	CDS	6058744	6059091	.	+	0	Parent=Os02t0208100-01
Chr02	irgsp1_rep	CDS	6059613	6060002	.	+	0	Parent=Os02t0208100-01
Chr02	irgsp1_rep	three_prime_UTR	6060003	6060267	.	+	.	Parent=Os02t0208100-01
Chr02	irgsp1_rep	mRNA	6057165	6059849	.	-	.	ID=Os02t0208150-00;Name=Os02t0208150-00;Locus_id=Os02g0208150;Note=Hypothetical protein.;Transcript_evidence=tplb0029e11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0208150-00
Chr02	irgsp1_rep	five_prime_UTR	6059611	6059849	.	-	.	Parent=Os02t0208150-00
Chr02	irgsp1_rep	five_prime_UTR	6058727	6059089	.	-	.	Parent=Os02t0208150-00
Chr02	irgsp1_rep	five_prime_UTR	6058518	6058653	.	-	.	Parent=Os02t0208150-00
Chr02	irgsp1_rep	five_prime_UTR	6058169	6058438	.	-	.	Parent=Os02t0208150-00
Chr02	irgsp1_rep	five_prime_UTR	6057513	6057920	.	-	.	Parent=Os02t0208150-00
Chr02	irgsp1_rep	CDS	6057165	6057512	.	-	0	Parent=Os02t0208150-00
Chr02	irgsp1_rep	mRNA	6062275	6066703	.	+	.	ID=Os02t0208200-01;Name=Os02t0208200-01;Locus_id=Os02g0208200;Note=Similar to RNA-binding protein 25.;Transcript_evidence=AK067315 (DDBJ%2C Best hit);ORF_evidence=NP_001148482.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013105L15;TENOR=Os02t0208200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	6062275	6062407	.	+	.	Parent=Os02t0208200-01
Chr02	irgsp1_rep	CDS	6062408	6062623	.	+	0	Parent=Os02t0208200-01
Chr02	irgsp1_rep	three_prime_UTR	6062624	6065366	.	+	.	Parent=Os02t0208200-01
Chr02	irgsp1_rep	three_prime_UTR	6065686	6065754	.	+	.	Parent=Os02t0208200-01
Chr02	irgsp1_rep	three_prime_UTR	6065893	6065958	.	+	.	Parent=Os02t0208200-01
Chr02	irgsp1_rep	three_prime_UTR	6066062	6066130	.	+	.	Parent=Os02t0208200-01
Chr02	irgsp1_rep	three_prime_UTR	6066348	6066703	.	+	.	Parent=Os02t0208200-01
Chr02	irgsp1_rep	mRNA	6071679	6075431	.	+	.	ID=Os02t0208300-01;Name=Os02t0208300-01;Locus_id=Os02g0208300;CGSNL Gene Symbol=PDR7;CGSNL Gene Name=PLEIOTROPIC DRUG RESISTANCE 7;Oryzabase Gene Symbol Synonym(s)=OsABCG39%2C OsPDR7;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 39%2C pleiotropic drug resistance 7;Note=ABC-2 type transporter domain containing protein.;Transcript_evidence=AK073104 (DDBJ%2C Best hit);ORF_evidence=B9F3Y3 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=ABC-2 type transporter (IPR013525);NIAS_FLcDNA=J033020F20;Oryzabase=12013;TENOR=Os02t0208300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	6071679	6071789	.	+	.	Parent=Os02t0208300-01
Chr02	irgsp1_rep	CDS	6071790	6072341	.	+	0	Parent=Os02t0208300-01
Chr02	irgsp1_rep	three_prime_UTR	6072342	6072727	.	+	.	Parent=Os02t0208300-01
Chr02	irgsp1_rep	three_prime_UTR	6072859	6074591	.	+	.	Parent=Os02t0208300-01
Chr02	irgsp1_rep	three_prime_UTR	6074674	6075431	.	+	.	Parent=Os02t0208300-01
Chr02	irgsp1_rep	mRNA	6070662	6077304	.	-	.	ID=Os02t0208400-01;Name=Os02t0208400-01;Locus_id=Os02g0208400;Note=Hypothetical gene.;Transcript_evidence=AK101855 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033069N21;Expression=AK101855;TENOR=Os02t0208400-01;KEGG=Os02t0208400-01
Chr02	irgsp1_rep	five_prime_UTR	6077177	6077304	.	-	.	Parent=Os02t0208400-01
Chr02	irgsp1_rep	five_prime_UTR	6074674	6075630	.	-	.	Parent=Os02t0208400-01
Chr02	irgsp1_rep	five_prime_UTR	6072859	6074591	.	-	.	Parent=Os02t0208400-01
Chr02	irgsp1_rep	five_prime_UTR	6071402	6072727	.	-	.	Parent=Os02t0208400-01
Chr02	irgsp1_rep	CDS	6071180	6071401	.	-	0	Parent=Os02t0208400-01
Chr02	irgsp1_rep	three_prime_UTR	6070662	6071179	.	-	.	Parent=Os02t0208400-01
Chr02	irgsp1_rep	mRNA	6070766	6072501	.	-	.	ID=Os02t0208400-02;Name=Os02t0208400-02;Locus_id=Os02g0208400;Note=Hypothetical gene.;Transcript_evidence=AK059072 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-021-H08;Expression=AK059072;TENOR=Os02t0208400-02;KEGG=Os02t0208400-02
Chr02	irgsp1_rep	five_prime_UTR	6072500	6072501	.	-	.	Parent=Os02t0208400-02
Chr02	irgsp1_rep	CDS	6072245	6072499	.	-	0	Parent=Os02t0208400-02
Chr02	irgsp1_rep	three_prime_UTR	6071658	6072244	.	-	.	Parent=Os02t0208400-02
Chr02	irgsp1_rep	three_prime_UTR	6070766	6071395	.	-	.	Parent=Os02t0208400-02
Chr02	irgsp1_rep	mRNA	6078179	6079111	.	-	.	ID=Os02t0208500-01;Name=Os02t0208500-01;Locus_id=Os02g0208500;CGSNL Gene Symbol=CDT4;CGSNL Gene Name=CADMIUM TOLERANT 4;Oryzabase Gene Symbol Synonym(s)=OsCDT4;Oryzabase Gene Name Synonym(s)=sativa DcCDT1 homologue 4%2C cadmium tolerance 4;Note=Conserved hypothetical protein.;Transcript_evidence=AK059641 (DDBJ%2C Best hit);ORF_evidence=XP_002453521.1 (RefSeq);NIAS_FLcDNA=001-031-B08;Oryzabase=8301;Expression=AK059641;TENOR=Os02t0208500-01;KEGG=Os02t0208500-01
Chr02	irgsp1_rep	five_prime_UTR	6079009	6079111	.	-	.	Parent=Os02t0208500-01
Chr02	irgsp1_rep	CDS	6078917	6079008	.	-	0	Parent=Os02t0208500-01
Chr02	irgsp1_rep	CDS	6078566	6078656	.	-	1	Parent=Os02t0208500-01
Chr02	irgsp1_rep	three_prime_UTR	6078179	6078565	.	-	.	Parent=Os02t0208500-01
Chr02	irgsp1_rep	mRNA	6083116	6088700	.	+	.	ID=Os02t0208600-01;Name=Os02t0208600-01;Locus_id=Os02g0208600;Note=Transcription elongation factor S-II%2C central region domain containing protein.;Transcript_evidence=AK099831 (DDBJ%2C Best hit);ORF_evidence=Q6H8E1 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351);InterPro=Transcription elongation factor S-II%2C central domain (IPR003618),Spen paralogue and orthologue SPOC%2C C-terminal (IPR012921);NIAS_FLcDNA=J013105L05;Expression=AK099831;TENOR=Os02t0208600-01;KEGG=Os02t0208600-01
Chr02	irgsp1_rep	five_prime_UTR	6083116	6083359	.	+	.	Parent=Os02t0208600-01
Chr02	irgsp1_rep	five_prime_UTR	6084255	6084330	.	+	.	Parent=Os02t0208600-01
Chr02	irgsp1_rep	CDS	6084331	6086441	.	+	0	Parent=Os02t0208600-01
Chr02	irgsp1_rep	CDS	6087559	6087679	.	+	1	Parent=Os02t0208600-01
Chr02	irgsp1_rep	CDS	6088088	6088147	.	+	0	Parent=Os02t0208600-01
Chr02	irgsp1_rep	CDS	6088254	6088700	.	+	0	Parent=Os02t0208600-01
Chr02	irgsp1_rep	mRNA	6090633	6091644	.	+	.	ID=Os02t0208650-00;Name=Os02t0208650-00;Locus_id=Os02g0208650;Note=Conserved hypothetical protein.;Transcript_evidence=FP094705 (DDBJ);ORF_evidence=B9F3Y5 (UniProt);TENOR=Os02t0208650-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	6090633	6090852	.	+	0	Parent=Os02t0208650-00
Chr02	irgsp1_rep	CDS	6091226	6091404	.	+	2	Parent=Os02t0208650-00
Chr02	irgsp1_rep	three_prime_UTR	6091405	6091644	.	+	.	Parent=Os02t0208650-00
Chr02	irgsp1_rep	mRNA	6094465	6095673	.	+	.	ID=Os02t0208675-00;Name=Os02t0208675-00;Locus_id=Os02g0208675;Note=Hypothetical protein.;Transcript_evidence=tplb0054i08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0208675-00
Chr02	irgsp1_rep	CDS	6094465	6095643	.	+	0	Parent=Os02t0208675-00
Chr02	irgsp1_rep	three_prime_UTR	6095644	6095673	.	+	.	Parent=Os02t0208675-00
Chr02	irgsp1_rep	mRNA	6094525	6095670	.	-	.	ID=Os02t0208700-00;Name=Os02t0208700-00;Locus_id=Os02g0208700;Oryzabase Gene Symbol Synonym(s)=OsKMD1%2C OsFbox074%2C OsFbox74%2C Os_F0323;Oryzabase Gene Name Synonym(s)=KISS ME DEADLY1%2C KISS ME DEADLY 1%2C F-box protein 74;Note=Similar to Protein kinase Kelch repeat:Kelch.;Transcript_evidence=ab initio prediction;ORF_evidence=B6SJR4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Kelch repeat type 1 (IPR006652),Galactose oxidase%2C beta-propeller (IPR015916);Oryzabase=16703;TENOR=Os02t0208700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	6095551	6095670	.	-	0	Parent=Os02t0208700-00
Chr02	irgsp1_rep	CDS	6094525	6095328	.	-	0	Parent=Os02t0208700-00
Chr02	irgsp1_rep	mRNA	6110092	6118709	.	+	.	ID=Os02t0208900-01;Name=Os02t0208900-01;Locus_id=Os02g0208900;Oryzabase Gene Name Synonym(s)=calcium-binding repeat protein;Note=Similar to ZIGA2 protein (Fragment).;Transcript_evidence=AK121183 (DDBJ%2C Best hit);ORF_evidence=B6U114 (UniProt);GO=Biological Process: regulation of ARF GTPase activity (GO:0032312),Molecular Function: ARF GTPase activator activity (GO:0008060),Molecular Function: zinc ion binding (GO:0008270);InterPro=Arf GTPase activating protein (IPR001164);NIAS_FLcDNA=J023084M01;Oryzabase=15991;Expression=AK121183;TENOR=Os02t0208900-01;KEGG=Os02t0208900-01
Chr02	irgsp1_rep	five_prime_UTR	6110092	6110276	.	+	.	Parent=Os02t0208900-01
Chr02	irgsp1_rep	five_prime_UTR	6110410	6110451	.	+	.	Parent=Os02t0208900-01
Chr02	irgsp1_rep	CDS	6110452	6110550	.	+	0	Parent=Os02t0208900-01
Chr02	irgsp1_rep	CDS	6112837	6112898	.	+	0	Parent=Os02t0208900-01
Chr02	irgsp1_rep	CDS	6113044	6113131	.	+	1	Parent=Os02t0208900-01
Chr02	irgsp1_rep	CDS	6113215	6113276	.	+	0	Parent=Os02t0208900-01
Chr02	irgsp1_rep	CDS	6113363	6113456	.	+	1	Parent=Os02t0208900-01
Chr02	irgsp1_rep	CDS	6113573	6114127	.	+	0	Parent=Os02t0208900-01
Chr02	irgsp1_rep	CDS	6114279	6114770	.	+	0	Parent=Os02t0208900-01
Chr02	irgsp1_rep	CDS	6114867	6115037	.	+	0	Parent=Os02t0208900-01
Chr02	irgsp1_rep	CDS	6116613	6116717	.	+	0	Parent=Os02t0208900-01
Chr02	irgsp1_rep	CDS	6116803	6116952	.	+	0	Parent=Os02t0208900-01
Chr02	irgsp1_rep	CDS	6117272	6117398	.	+	0	Parent=Os02t0208900-01
Chr02	irgsp1_rep	CDS	6117485	6117548	.	+	2	Parent=Os02t0208900-01
Chr02	irgsp1_rep	CDS	6118047	6118164	.	+	1	Parent=Os02t0208900-01
Chr02	irgsp1_rep	three_prime_UTR	6118165	6118709	.	+	.	Parent=Os02t0208900-01
Chr02	irgsp1_rep	mRNA	6110127	6116866	.	+	.	ID=Os02t0208900-02;Name=Os02t0208900-02;Locus_id=Os02g0208900;Oryzabase Gene Name Synonym(s)=calcium-binding repeat protein;Note=Similar to GTP-ase activating protein for Arf containing protein.;Transcript_evidence=AK070031 (DDBJ%2C Best hit);ORF_evidence=B6U114 (UniProt);GO=Biological Process: regulation of ARF GTPase activity (GO:0032312),Molecular Function: ARF GTPase activator activity (GO:0008060),Molecular Function: zinc ion binding (GO:0008270);InterPro=Arf GTPase activating protein (IPR001164);NIAS_FLcDNA=J023038F08;Oryzabase=15991;TENOR=Os02t0208900-02
Chr02	irgsp1_rep	five_prime_UTR	6110127	6110276	.	+	.	Parent=Os02t0208900-02
Chr02	irgsp1_rep	five_prime_UTR	6110410	6110451	.	+	.	Parent=Os02t0208900-02
Chr02	irgsp1_rep	CDS	6110452	6110550	.	+	0	Parent=Os02t0208900-02
Chr02	irgsp1_rep	CDS	6112837	6112898	.	+	0	Parent=Os02t0208900-02
Chr02	irgsp1_rep	CDS	6113044	6113131	.	+	1	Parent=Os02t0208900-02
Chr02	irgsp1_rep	CDS	6113215	6113276	.	+	0	Parent=Os02t0208900-02
Chr02	irgsp1_rep	CDS	6113363	6113456	.	+	1	Parent=Os02t0208900-02
Chr02	irgsp1_rep	CDS	6113573	6114127	.	+	0	Parent=Os02t0208900-02
Chr02	irgsp1_rep	CDS	6114279	6114770	.	+	0	Parent=Os02t0208900-02
Chr02	irgsp1_rep	CDS	6114867	6115037	.	+	0	Parent=Os02t0208900-02
Chr02	irgsp1_rep	CDS	6116613	6116717	.	+	0	Parent=Os02t0208900-02
Chr02	irgsp1_rep	CDS	6116803	6116866	.	+	0	Parent=Os02t0208900-02
Chr02	irgsp1_rep	mRNA	6110127	6116289	.	+	.	ID=Os02t0208900-03;Name=Os02t0208900-03;Locus_id=Os02g0208900;Oryzabase Gene Name Synonym(s)=calcium-binding repeat protein;Note=Similar to GTP-ase activating protein for Arf containing protein.;Transcript_evidence=AK066171 (DDBJ%2C Best hit);ORF_evidence=B6U114 (UniProt);GO=Biological Process: regulation of ARF GTPase activity (GO:0032312),Molecular Function: ARF GTPase activator activity (GO:0008060),Molecular Function: zinc ion binding (GO:0008270);InterPro=Arf GTPase activating protein (IPR001164);NIAS_FLcDNA=J013055F05;Oryzabase=15991;Expression=AK066171;TENOR=Os02t0208900-03;KEGG=Os02t0208900-03
Chr02	irgsp1_rep	five_prime_UTR	6110127	6110276	.	+	.	Parent=Os02t0208900-03
Chr02	irgsp1_rep	five_prime_UTR	6110410	6110451	.	+	.	Parent=Os02t0208900-03
Chr02	irgsp1_rep	CDS	6110452	6110550	.	+	0	Parent=Os02t0208900-03
Chr02	irgsp1_rep	CDS	6112837	6112898	.	+	0	Parent=Os02t0208900-03
Chr02	irgsp1_rep	CDS	6113044	6113131	.	+	1	Parent=Os02t0208900-03
Chr02	irgsp1_rep	CDS	6113215	6113276	.	+	0	Parent=Os02t0208900-03
Chr02	irgsp1_rep	CDS	6113363	6113456	.	+	1	Parent=Os02t0208900-03
Chr02	irgsp1_rep	CDS	6113573	6114127	.	+	0	Parent=Os02t0208900-03
Chr02	irgsp1_rep	CDS	6114279	6114770	.	+	0	Parent=Os02t0208900-03
Chr02	irgsp1_rep	CDS	6114867	6115049	.	+	0	Parent=Os02t0208900-03
Chr02	irgsp1_rep	three_prime_UTR	6115050	6116289	.	+	.	Parent=Os02t0208900-03
Chr02	irgsp1_rep	mRNA	6119126	6127235	.	-	.	ID=Os02t0209000-01;Name=Os02t0209000-01;Locus_id=Os02g0209000;Note=Hypothetical conserved gene.;Transcript_evidence=AK242869 (DDBJ%2C Best hit);ORF_evidence=B8ADW8 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: membrane coat (GO:0030117),Molecular Function: structural molecule activity (GO:0005198),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),Coatomer%2C WD associated region (IPR006692),WD40 repeat-like-containing domain (IPR011046),Tetratricopeptide-like helical (IPR011990),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J090076K18;TENOR=Os02t0209000-01;KEGG=Os02t0209000-01
Chr02	irgsp1_rep	CDS	6127179	6127235	.	-	0	Parent=Os02t0209000-01
Chr02	irgsp1_rep	CDS	6126961	6127109	.	-	0	Parent=Os02t0209000-01
Chr02	irgsp1_rep	CDS	6125940	6126008	.	-	1	Parent=Os02t0209000-01
Chr02	irgsp1_rep	CDS	6125464	6125614	.	-	1	Parent=Os02t0209000-01
Chr02	irgsp1_rep	CDS	6125315	6125380	.	-	0	Parent=Os02t0209000-01
Chr02	irgsp1_rep	CDS	6124737	6124925	.	-	0	Parent=Os02t0209000-01
Chr02	irgsp1_rep	CDS	6123927	6124067	.	-	0	Parent=Os02t0209000-01
Chr02	irgsp1_rep	CDS	6123762	6123836	.	-	0	Parent=Os02t0209000-01
Chr02	irgsp1_rep	CDS	6123497	6123673	.	-	0	Parent=Os02t0209000-01
Chr02	irgsp1_rep	CDS	6123312	6123403	.	-	0	Parent=Os02t0209000-01
Chr02	irgsp1_rep	CDS	6123115	6123231	.	-	1	Parent=Os02t0209000-01
Chr02	irgsp1_rep	CDS	6122922	6123039	.	-	1	Parent=Os02t0209000-01
Chr02	irgsp1_rep	CDS	6122772	6122840	.	-	0	Parent=Os02t0209000-01
Chr02	irgsp1_rep	CDS	6121409	6121605	.	-	0	Parent=Os02t0209000-01
Chr02	irgsp1_rep	CDS	6121216	6121309	.	-	1	Parent=Os02t0209000-01
Chr02	irgsp1_rep	CDS	6120787	6120893	.	-	0	Parent=Os02t0209000-01
Chr02	irgsp1_rep	CDS	6120378	6120513	.	-	1	Parent=Os02t0209000-01
Chr02	irgsp1_rep	CDS	6120016	6120136	.	-	0	Parent=Os02t0209000-01
Chr02	irgsp1_rep	CDS	6119639	6119658	.	-	2	Parent=Os02t0209000-01
Chr02	irgsp1_rep	three_prime_UTR	6119593	6119638	.	-	.	Parent=Os02t0209000-01
Chr02	irgsp1_rep	three_prime_UTR	6119126	6119512	.	-	.	Parent=Os02t0209000-01
Chr02	irgsp1_rep	mRNA	6127391	6128638	.	+	.	ID=Os02t0209050-00;Name=Os02t0209050-00;Locus_id=Os02g0209050;Note=Hypothetical gene.;Transcript_evidence=BT086934 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0209050-00;KEGG=Os02t0209050-00
Chr02	irgsp1_rep	five_prime_UTR	6127391	6127669	.	+	.	Parent=Os02t0209050-00
Chr02	irgsp1_rep	CDS	6127670	6127764	.	+	0	Parent=Os02t0209050-00
Chr02	irgsp1_rep	CDS	6128392	6128453	.	+	1	Parent=Os02t0209050-00
Chr02	irgsp1_rep	CDS	6128565	6128638	.	+	2	Parent=Os02t0209050-00
Chr02	irgsp1_rep	mRNA	6131817	6138156	.	-	.	ID=Os02t0209100-01;Name=Os02t0209100-01;Locus_id=Os02g0209100;Note=Similar to Coatomer beta' subunit (Beta'-coat protein) (Beta'-COP) (p102).;Transcript_evidence=AK099955 (DDBJ%2C Best hit);ORF_evidence=A1YKF7 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: membrane coat (GO:0030117),Molecular Function: structural molecule activity (GO:0005198),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Coatomer%2C WD associated region (IPR006692),WD40 repeat-like-containing domain (IPR011046),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013124K18;Expression=AK099955;TENOR=Os02t0209100-01;KEGG=Os02t0209100-01
Chr02	irgsp1_rep	five_prime_UTR	6138156	6138156	.	-	.	Parent=Os02t0209100-01
Chr02	irgsp1_rep	CDS	6138018	6138155	.	-	0	Parent=Os02t0209100-01
Chr02	irgsp1_rep	CDS	6137869	6137934	.	-	0	Parent=Os02t0209100-01
Chr02	irgsp1_rep	CDS	6137339	6137527	.	-	0	Parent=Os02t0209100-01
Chr02	irgsp1_rep	CDS	6136457	6136597	.	-	0	Parent=Os02t0209100-01
Chr02	irgsp1_rep	CDS	6136293	6136367	.	-	0	Parent=Os02t0209100-01
Chr02	irgsp1_rep	CDS	6136028	6136204	.	-	0	Parent=Os02t0209100-01
Chr02	irgsp1_rep	CDS	6135841	6135932	.	-	0	Parent=Os02t0209100-01
Chr02	irgsp1_rep	CDS	6135644	6135760	.	-	1	Parent=Os02t0209100-01
Chr02	irgsp1_rep	CDS	6135451	6135568	.	-	1	Parent=Os02t0209100-01
Chr02	irgsp1_rep	CDS	6135301	6135369	.	-	0	Parent=Os02t0209100-01
Chr02	irgsp1_rep	CDS	6134099	6134295	.	-	0	Parent=Os02t0209100-01
Chr02	irgsp1_rep	CDS	6133906	6133999	.	-	1	Parent=Os02t0209100-01
Chr02	irgsp1_rep	CDS	6133323	6133429	.	-	0	Parent=Os02t0209100-01
Chr02	irgsp1_rep	CDS	6132911	6133046	.	-	1	Parent=Os02t0209100-01
Chr02	irgsp1_rep	CDS	6132525	6132674	.	-	0	Parent=Os02t0209100-01
Chr02	irgsp1_rep	three_prime_UTR	6132508	6132524	.	-	.	Parent=Os02t0209100-01
Chr02	irgsp1_rep	three_prime_UTR	6131817	6132038	.	-	.	Parent=Os02t0209100-01
Chr02	irgsp1_rep	mRNA	6140081	6141335	.	+	.	ID=Os02t0209201-00;Name=Os02t0209201-00;Locus_id=Os02g0209201;Note=Non-protein coding transcript.;Transcript_evidence=BT086934 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0209201-00
Chr02	irgsp1_rep	exon	6140081	6140454	.	+	.	Parent=Os02t0209201-00
Chr02	irgsp1_rep	exon	6141088	6141149	.	+	.	Parent=Os02t0209201-00
Chr02	irgsp1_rep	exon	6141262	6141335	.	+	.	Parent=Os02t0209201-00
Chr02	irgsp1_rep	mRNA	6146113	6146678	.	-	.	ID=Os02t0209300-01;Name=Os02t0209300-01;Locus_id=Os02g0209300;Note=Hypothetical conserved gene.;Transcript_evidence=AK063719 (DDBJ%2C Best hit);ORF_evidence=A3A4F2 (UniProt);InterPro=Arabinogalactan peptide%2C AGP (IPR009424);NIAS_FLcDNA=001-120-C11;Expression=AK063719;TENOR=Os02t0209300-01;KEGG=Os02t0209300-01
Chr02	irgsp1_rep	five_prime_UTR	6146562	6146678	.	-	.	Parent=Os02t0209300-01
Chr02	irgsp1_rep	CDS	6146406	6146561	.	-	0	Parent=Os02t0209300-01
Chr02	irgsp1_rep	three_prime_UTR	6146113	6146405	.	-	.	Parent=Os02t0209300-01
Chr02	irgsp1_rep	mRNA	6149352	6150136	.	-	.	ID=Os02t0209400-01;Name=Os02t0209400-01;Locus_id=Os02g0209400;Note=Conserved hypothetical protein.;Transcript_evidence=AK108109 (DDBJ%2C Best hit);ORF_evidence=A3A4F3 (UniProt);NIAS_FLcDNA=002-139-B10;Expression=AK108109;TENOR=Os02t0209400-01;KEGG=Os02t0209400-01
Chr02	irgsp1_rep	five_prime_UTR	6150023	6150136	.	-	.	Parent=Os02t0209400-01
Chr02	irgsp1_rep	CDS	6149480	6150022	.	-	0	Parent=Os02t0209400-01
Chr02	irgsp1_rep	three_prime_UTR	6149352	6149479	.	-	.	Parent=Os02t0209400-01
Chr02	irgsp1_rep	mRNA	6158238	6159991	.	-	.	ID=Os02t0209900-01;Name=Os02t0209900-01;Locus_id=Os02g0209900;CGSNL Gene Symbol=SYP125;CGSNL Gene Name=SYNTAXIN OF PLANTS 125;Oryzabase Gene Symbol Synonym(s)=OsSYP125;Oryzabase Gene Name Synonym(s)=Syntaxin of Plants125;Note=Syntaxin%2C N-terminal domain containing protein.;Transcript_evidence=AK289256 (DDBJ%2C Best hit);ORF_evidence=Q69HV9 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: membrane (GO:0016020),Molecular Function: SNAP receptor activity (GO:0005484),Molecular Function: protein binding (GO:0005515);InterPro=Target SNARE coiled-coil domain (IPR000727),Syntaxin%2C N-terminal (IPR006011),Syntaxin/epimorphin%2C conserved site (IPR006012),t-SNARE (IPR010989);NIAS_FLcDNA=J100082L12;Oryzabase=23011;TENOR=Os02t0209900-01;KEGG=Os02t0209900-01
Chr02	irgsp1_rep	five_prime_UTR	6159761	6159991	.	-	.	Parent=Os02t0209900-01
Chr02	irgsp1_rep	CDS	6159311	6159760	.	-	0	Parent=Os02t0209900-01
Chr02	irgsp1_rep	CDS	6158355	6158840	.	-	0	Parent=Os02t0209900-01
Chr02	irgsp1_rep	three_prime_UTR	6158238	6158354	.	-	.	Parent=Os02t0209900-01
Chr02	irgsp1_rep	mRNA	6160961	6167476	.	+	.	ID=Os02t0210100-01;Name=Os02t0210100-01;Locus_id=Os02g0210100;Note=Conserved hypothetical protein.;Transcript_evidence=AK288360 (DDBJ%2C Best hit);ORF_evidence=Q8H3U3 (UniProt);NIAS_FLcDNA=J090024N04;TENOR=Os02t0210100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	6160961	6166527	.	+	.	Parent=Os02t0210100-01
Chr02	irgsp1_rep	CDS	6166528	6166821	.	+	0	Parent=Os02t0210100-01
Chr02	irgsp1_rep	three_prime_UTR	6166822	6167476	.	+	.	Parent=Os02t0210100-01
Chr02	irgsp1_rep	mRNA	6183115	6188582	.	-	.	ID=Os02t0210600-01;Name=Os02t0210600-01;Locus_id=Os02g0210600;Note=Hypothetical protein.;Transcript_evidence=AK100562 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023104G23;Expression=AK100562;TENOR=Os02t0210600-01;KEGG=Os02t0210600-01
Chr02	irgsp1_rep	five_prime_UTR	6188459	6188582	.	-	.	Parent=Os02t0210600-01
Chr02	irgsp1_rep	five_prime_UTR	6184827	6186268	.	-	.	Parent=Os02t0210600-01
Chr02	irgsp1_rep	CDS	6184524	6184826	.	-	0	Parent=Os02t0210600-01
Chr02	irgsp1_rep	three_prime_UTR	6183115	6184523	.	-	.	Parent=Os02t0210600-01
Chr02	irgsp1_rep	mRNA	6183755	6187803	.	+	.	ID=Os02t0210700-01;Name=Os02t0210700-01;Locus_id=Os02g0210700;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK111879 (DDBJ%2C Best hit);ORF_evidence=B8AE87 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033042H21;Expression=AK111879;TENOR=Os02t0210700-01;KEGG=Os02t0210700-01
Chr02	irgsp1_rep	five_prime_UTR	6183755	6183951	.	+	.	Parent=Os02t0210700-01
Chr02	irgsp1_rep	CDS	6183952	6187027	.	+	0	Parent=Os02t0210700-01
Chr02	irgsp1_rep	CDS	6187165	6187523	.	+	2	Parent=Os02t0210700-01
Chr02	irgsp1_rep	three_prime_UTR	6187524	6187803	.	+	.	Parent=Os02t0210700-01
Chr02	irgsp1_rep	mRNA	6188722	6193629	.	+	.	ID=Os02t0210800-01;Name=Os02t0210800-01;Locus_id=Os02g0210800;Oryzabase Gene Name Synonym(s)=sterol glucosyltransferase;Note=Similar to Sterol glucosyltransferase-like protein (Fragment).;Transcript_evidence=AK073717 (DDBJ%2C Best hit);ORF_evidence=A6N1S9 (UniProt);NIAS_FLcDNA=J033057L23;Oryzabase=23056;TENOR=Os02t0210800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	6188722	6188840	.	+	.	Parent=Os02t0210800-01
Chr02	irgsp1_rep	five_prime_UTR	6189036	6189107	.	+	.	Parent=Os02t0210800-01
Chr02	irgsp1_rep	five_prime_UTR	6189202	6189229	.	+	.	Parent=Os02t0210800-01
Chr02	irgsp1_rep	CDS	6189230	6189295	.	+	0	Parent=Os02t0210800-01
Chr02	irgsp1_rep	CDS	6189424	6189540	.	+	0	Parent=Os02t0210800-01
Chr02	irgsp1_rep	CDS	6189953	6190023	.	+	0	Parent=Os02t0210800-01
Chr02	irgsp1_rep	CDS	6190131	6190212	.	+	1	Parent=Os02t0210800-01
Chr02	irgsp1_rep	CDS	6190648	6190749	.	+	0	Parent=Os02t0210800-01
Chr02	irgsp1_rep	CDS	6190872	6190927	.	+	0	Parent=Os02t0210800-01
Chr02	irgsp1_rep	CDS	6191178	6191212	.	+	1	Parent=Os02t0210800-01
Chr02	irgsp1_rep	CDS	6192258	6192292	.	+	2	Parent=Os02t0210800-01
Chr02	irgsp1_rep	three_prime_UTR	6192293	6192479	.	+	.	Parent=Os02t0210800-01
Chr02	irgsp1_rep	three_prime_UTR	6192558	6192617	.	+	.	Parent=Os02t0210800-01
Chr02	irgsp1_rep	three_prime_UTR	6192719	6192758	.	+	.	Parent=Os02t0210800-01
Chr02	irgsp1_rep	three_prime_UTR	6192998	6193217	.	+	.	Parent=Os02t0210800-01
Chr02	irgsp1_rep	three_prime_UTR	6193313	6193629	.	+	.	Parent=Os02t0210800-01
Chr02	irgsp1_rep	mRNA	6195010	6195441	.	+	.	ID=Os02t0210900-00;Name=Os02t0210900-00;Locus_id=Os02g0210900;Note=Conserved hypothetical protein.;Transcript_evidence=AK367477 (DDBJ);ORF_evidence=Q6H8C4 (UniProt);TENOR=Os02t0210900-00
Chr02	irgsp1_rep	CDS	6195010	6195441	.	+	0	Parent=Os02t0210900-00
Chr02	irgsp1_rep	mRNA	6197725	6204381	.	+	.	ID=Os02t0211000-00;Name=Os02t0211000-00;Locus_id=Os02g0211000;CGSNL Gene Symbol=ABCA1;CGSNL Gene Name=ABC TRANSPORTER A FAMILY MEMBER 1;Oryzabase Gene Symbol Synonym(s)=OsABCA1;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCA subgroup member 1;Note=Conserved hypothetical protein.;Transcript_evidence=AK365359 (DDBJ);ORF_evidence=B9F488 (UniProt);Oryzabase=11946;TENOR=Os02t0211000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	6197725	6198220	.	+	0	Parent=Os02t0211000-00
Chr02	irgsp1_rep	CDS	6198743	6198855	.	+	2	Parent=Os02t0211000-00
Chr02	irgsp1_rep	CDS	6199000	6199083	.	+	0	Parent=Os02t0211000-00
Chr02	irgsp1_rep	CDS	6199304	6199327	.	+	0	Parent=Os02t0211000-00
Chr02	irgsp1_rep	three_prime_UTR	6199328	6199375	.	+	.	Parent=Os02t0211000-00
Chr02	irgsp1_rep	three_prime_UTR	6199450	6199655	.	+	.	Parent=Os02t0211000-00
Chr02	irgsp1_rep	three_prime_UTR	6199899	6200057	.	+	.	Parent=Os02t0211000-00
Chr02	irgsp1_rep	three_prime_UTR	6200172	6200334	.	+	.	Parent=Os02t0211000-00
Chr02	irgsp1_rep	three_prime_UTR	6200504	6200629	.	+	.	Parent=Os02t0211000-00
Chr02	irgsp1_rep	three_prime_UTR	6200717	6200800	.	+	.	Parent=Os02t0211000-00
Chr02	irgsp1_rep	three_prime_UTR	6201300	6201664	.	+	.	Parent=Os02t0211000-00
Chr02	irgsp1_rep	three_prime_UTR	6202104	6202304	.	+	.	Parent=Os02t0211000-00
Chr02	irgsp1_rep	three_prime_UTR	6202585	6202694	.	+	.	Parent=Os02t0211000-00
Chr02	irgsp1_rep	three_prime_UTR	6202819	6202903	.	+	.	Parent=Os02t0211000-00
Chr02	irgsp1_rep	three_prime_UTR	6203453	6203581	.	+	.	Parent=Os02t0211000-00
Chr02	irgsp1_rep	three_prime_UTR	6203663	6203768	.	+	.	Parent=Os02t0211000-00
Chr02	irgsp1_rep	three_prime_UTR	6203884	6203972	.	+	.	Parent=Os02t0211000-00
Chr02	irgsp1_rep	three_prime_UTR	6204072	6204381	.	+	.	Parent=Os02t0211000-00
Chr02	irgsp1_rep	mRNA	6205380	6207320	.	+	.	ID=Os02t0211100-01;Name=Os02t0211100-01;Locus_id=Os02g0211100;Note=Similar to H0423H10.12 protein.;Transcript_evidence=AK120042 (DDBJ%2C Best hit);ORF_evidence=Q9FSQ1 (UniProt);NIAS_FLcDNA=002-188-E11;TENOR=Os02t0211100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	6205380	6205634	.	+	.	Parent=Os02t0211100-01
Chr02	irgsp1_rep	five_prime_UTR	6206870	6206982	.	+	.	Parent=Os02t0211100-01
Chr02	irgsp1_rep	CDS	6206983	6207135	.	+	0	Parent=Os02t0211100-01
Chr02	irgsp1_rep	three_prime_UTR	6207136	6207320	.	+	.	Parent=Os02t0211100-01
Chr02	irgsp1_rep	mRNA	6205380	6207340	.	+	.	ID=Os02t0211100-02;Name=Os02t0211100-02;Locus_id=Os02g0211100;Note=Similar to H0423H10.12 protein.;Transcript_evidence=AK063336 (DDBJ%2C Best hit);ORF_evidence=Q9FSQ1 (UniProt);NIAS_FLcDNA=001-114-A07;TENOR=Os02t0211100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	6205380	6206982	.	+	.	Parent=Os02t0211100-02
Chr02	irgsp1_rep	CDS	6206983	6207135	.	+	0	Parent=Os02t0211100-02
Chr02	irgsp1_rep	three_prime_UTR	6207136	6207340	.	+	.	Parent=Os02t0211100-02
Chr02	irgsp1_rep	mRNA	6207760	6213687	.	+	.	ID=Os02t0211150-00;Name=Os02t0211150-00;Locus_id=Os02g0211150;Note=Non-protein coding transcript.;Transcript_evidence=CT835336 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os02t0211150-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	exon	6207760	6207858	.	+	.	Parent=Os02t0211150-00
Chr02	irgsp1_rep	exon	6213292	6213687	.	+	.	Parent=Os02t0211150-00
Chr02	irgsp1_rep	mRNA	6212061	6212890	.	-	.	ID=Os02t0211200-01;Name=Os02t0211200-01;Locus_id=Os02g0211200;Note=Hypothetical conserved gene.;Transcript_evidence=AK288997 (DDBJ%2C Best hit);ORF_evidence=NP_001046272.1 (RefSeq);NIAS_FLcDNA=J090088B20;TENOR=Os02t0211200-01;KEGG=Os02t0211200-01
Chr02	irgsp1_rep	five_prime_UTR	6212211	6212890	.	-	.	Parent=Os02t0211200-01
Chr02	irgsp1_rep	CDS	6212061	6212210	.	-	0	Parent=Os02t0211200-01
Chr02	irgsp1_rep	mRNA	6222702	6224972	.	+	.	ID=Os02t0211350-01;Name=Os02t0211350-01;Locus_id=Os02g0211350;Note=Hypothetical gene.;Transcript_evidence=AK241525 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065171B16;TENOR=Os02t0211350-01;KEGG=Os02t0211350-01
Chr02	irgsp1_rep	five_prime_UTR	6222702	6222722	.	+	.	Parent=Os02t0211350-01
Chr02	irgsp1_rep	CDS	6222723	6223177	.	+	0	Parent=Os02t0211350-01
Chr02	irgsp1_rep	CDS	6223265	6223280	.	+	1	Parent=Os02t0211350-01
Chr02	irgsp1_rep	three_prime_UTR	6223281	6224972	.	+	.	Parent=Os02t0211350-01
Chr02	irgsp1_rep	mRNA	6226876	6228372	.	+	.	ID=Os02t0211500-01;Name=Os02t0211500-01;Locus_id=Os02g0211500;Note=Non-protein coding transcript.;Transcript_evidence=AK109899 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-149-F06;TENOR=Os02t0211500-01
Chr02	irgsp1_rep	exon	6226876	6228372	.	+	.	Parent=Os02t0211500-01
Chr02	irgsp1_rep	mRNA	6247083	6250359	.	-	.	ID=Os02t0211800-00;Name=Os02t0211800-00;Locus_id=Os02g0211800;CGSNL Gene Symbol=RLCK65;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 65;Oryzabase Gene Symbol Synonym(s)=OsRLCK65;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 65;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A3A4G5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18781;TENOR=Os02t0211800-00;KEGG=Os02t0211800-00
Chr02	irgsp1_rep	CDS	6247572	6250359	.	-	0	Parent=Os02t0211800-00
Chr02	irgsp1_rep	CDS	6247083	6247453	.	-	2	Parent=Os02t0211800-00
Chr02	irgsp1_rep	mRNA	6254346	6256373	.	-	.	ID=Os02t0211900-00;Name=Os02t0211900-00;Locus_id=Os02g0211900;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A3A4G6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);TENOR=Os02t0211900-00;KEGG=Os02t0211900-00
Chr02	irgsp1_rep	CDS	6254346	6256373	.	-	0	Parent=Os02t0211900-00
Chr02	irgsp1_rep	mRNA	6261071	6261628	.	-	.	ID=Os02t0212100-00;Name=Os02t0212100-00;Locus_id=Os02g0212100;Oryzabase Gene Symbol Synonym(s)=OsPDF1.2%2C DEFL6%2C OsDEFL6%2C OsDf-06%2C Df-06;Oryzabase Gene Name Synonym(s)=PLANT DEFENSIN 1.2%2C defensin-like 6;Note=Similar to Proteinase inhibitor Rgpi9 (Fragment).;Transcript_evidence=AK376628 (DDBJ);ORF_evidence=Q7X9L4 (UniProt);GO=Biological Process: defense response (GO:0006952);InterPro=Knottin (IPR003614),Gamma thionin (IPR008176),Gamma Purothionin (IPR008177);Oryzabase=18461;TENOR=Os02t0212100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	6261624	6261628	.	-	.	Parent=Os02t0212100-00
Chr02	irgsp1_rep	CDS	6261557	6261623	.	-	0	Parent=Os02t0212100-00
Chr02	irgsp1_rep	CDS	6261071	6261282	.	-	2	Parent=Os02t0212100-00
Chr02	irgsp1_rep	mRNA	6265995	6267554	.	+	.	ID=Os02t0212300-00;Name=Os02t0212300-00;Locus_id=Os02g0212300;Note=Conserved hypothetical protein.;Transcript_evidence=CT835411 (DDBJ%2C Best hit);ORF_evidence=A3A4G9 (UniProt);TENOR=Os02t0212300-00;KEGG=Os02t0212300-00
Chr02	irgsp1_rep	five_prime_UTR	6265995	6266058	.	+	.	Parent=Os02t0212300-00
Chr02	irgsp1_rep	CDS	6266059	6266272	.	+	0	Parent=Os02t0212300-00
Chr02	irgsp1_rep	CDS	6266752	6266798	.	+	2	Parent=Os02t0212300-00
Chr02	irgsp1_rep	three_prime_UTR	6266799	6267554	.	+	.	Parent=Os02t0212300-00
Chr02	irgsp1_rep	mRNA	6268420	6268818	.	+	.	ID=Os02t0212400-00;Name=Os02t0212400-00;Locus_id=Os02g0212400;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001046274.1 (RefSeq);TENOR=Os02t0212400-00;KEGG=Os02t0212400-00
Chr02	irgsp1_rep	CDS	6268420	6268624	.	+	0	Parent=Os02t0212400-00
Chr02	irgsp1_rep	CDS	6268766	6268818	.	+	2	Parent=Os02t0212400-00
Chr02	irgsp1_rep	mRNA	6270314	6271547	.	+	.	ID=Os02t0212500-01;Name=Os02t0212500-01;Locus_id=Os02g0212500;Note=Conserved hypothetical protein.;Transcript_evidence=AK066275 (DDBJ%2C Best hit);ORF_evidence=B8AE63 (UniProt);NIAS_FLcDNA=J013061M24;Expression=AK066275;TENOR=Os02t0212500-01;KEGG=Os02t0212500-01
Chr02	irgsp1_rep	five_prime_UTR	6270314	6270426	.	+	.	Parent=Os02t0212500-01
Chr02	irgsp1_rep	CDS	6270427	6270625	.	+	0	Parent=Os02t0212500-01
Chr02	irgsp1_rep	CDS	6271174	6271229	.	+	2	Parent=Os02t0212500-01
Chr02	irgsp1_rep	three_prime_UTR	6271230	6271547	.	+	.	Parent=Os02t0212500-01
Chr02	irgsp1_rep	mRNA	6311651	6313443	.	+	.	ID=Os02t0212900-00;Name=Os02t0212900-00;Locus_id=Os02g0212900;CGSNL Gene Symbol=RLCK66;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 66;Oryzabase Gene Symbol Synonym(s)=OsRLCK66;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 66;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=AK364681 (DDBJ);ORF_evidence=Q33B66 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);Oryzabase=18782;TENOR=Os02t0212900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	6311651	6311788	.	+	0	Parent=Os02t0212900-00
Chr02	irgsp1_rep	CDS	6312270	6312504	.	+	0	Parent=Os02t0212900-00
Chr02	irgsp1_rep	CDS	6312601	6312602	.	+	2	Parent=Os02t0212900-00
Chr02	irgsp1_rep	three_prime_UTR	6312603	6312834	.	+	.	Parent=Os02t0212900-00
Chr02	irgsp1_rep	three_prime_UTR	6312935	6313049	.	+	.	Parent=Os02t0212900-00
Chr02	irgsp1_rep	three_prime_UTR	6313205	6313443	.	+	.	Parent=Os02t0212900-00
Chr02	irgsp1_rep	mRNA	6309982	6310686	.	+	.	ID=Os02t0212975-00;Name=Os02t0212975-00;Locus_id=Os02g0212975;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001172855.1 (RefSeq);TENOR=Os02t0212975-00;KEGG=Os02t0212975-00
Chr02	irgsp1_rep	CDS	6309982	6310686	.	+	0	Parent=Os02t0212975-00
Chr02	irgsp1_rep	mRNA	6321112	6322164	.	-	.	ID=Os02t0213100-01;Name=Os02t0213100-01;Locus_id=Os02g0213100;Note=Conserved hypothetical protein.;Transcript_evidence=AK062445 (DDBJ%2C Best hit);ORF_evidence=Q6H826 (UniProt);NIAS_FLcDNA=001-103-B04;Expression=AK062445;TENOR=Os02t0213100-01;KEGG=Os02t0213100-01
Chr02	irgsp1_rep	five_prime_UTR	6322092	6322164	.	-	.	Parent=Os02t0213100-01
Chr02	irgsp1_rep	CDS	6321920	6322091	.	-	0	Parent=Os02t0213100-01
Chr02	irgsp1_rep	CDS	6321364	6321446	.	-	2	Parent=Os02t0213100-01
Chr02	irgsp1_rep	three_prime_UTR	6321112	6321363	.	-	.	Parent=Os02t0213100-01
Chr02	irgsp1_rep	mRNA	6342439	6345001	.	+	.	ID=Os02t0213450-00;Name=Os02t0213450-00;Locus_id=Os02g0213450;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001172856.1 (RefSeq);TENOR=Os02t0213450-00
Chr02	irgsp1_rep	CDS	6342439	6342458	.	+	0	Parent=Os02t0213450-00
Chr02	irgsp1_rep	CDS	6343680	6343785	.	+	1	Parent=Os02t0213450-00
Chr02	irgsp1_rep	CDS	6344108	6344207	.	+	0	Parent=Os02t0213450-00
Chr02	irgsp1_rep	CDS	6344292	6344377	.	+	2	Parent=Os02t0213450-00
Chr02	irgsp1_rep	CDS	6344777	6345001	.	+	0	Parent=Os02t0213450-00
Chr02	irgsp1_rep	mRNA	6376511	6377562	.	-	.	ID=Os02t0213700-00;Name=Os02t0213700-00;Locus_id=Os02g0213700;Note=Similar to H0311C03.5 protein.;Transcript_evidence=EU964122 (DDBJ);ORF_evidence=Q01I89 (UniProt);TENOR=Os02t0213700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	6377181	6377562	.	-	.	Parent=Os02t0213700-00
Chr02	irgsp1_rep	five_prime_UTR	6376922	6377070	.	-	.	Parent=Os02t0213700-00
Chr02	irgsp1_rep	CDS	6376511	6376921	.	-	0	Parent=Os02t0213700-00
Chr02	irgsp1_rep	mRNA	6387970	6390904	.	+	.	ID=Os02t0214050-01;Name=Os02t0214050-01;Locus_id=Os02g0214050;Note=Hypothetical conserved gene.;Transcript_evidence=AK288182 (DDBJ%2C Best hit);ORF_evidence=Q6H8B4 (UniProt);NIAS_FLcDNA=J090005J12;TENOR=Os02t0214050-01;KEGG=Os02t0214050-01
Chr02	irgsp1_rep	five_prime_UTR	6387970	6389892	.	+	.	Parent=Os02t0214050-01
Chr02	irgsp1_rep	CDS	6389893	6390054	.	+	0	Parent=Os02t0214050-01
Chr02	irgsp1_rep	three_prime_UTR	6390055	6390904	.	+	.	Parent=Os02t0214050-01
Chr02	irgsp1_rep	mRNA	6397332	6399266	.	+	.	ID=Os02t0214300-01;Name=Os02t0214300-01;Locus_id=Os02g0214300;RAP-DB Gene Symbol Synonym(s)=TMS5%2C OsaTRZ1;RAP-DB Gene Name Synonym(s)=Thermo-sensitive genic male sterile 5%2C tRNase Z1;CGSNL Gene Symbol=TMS5;CGSNL Gene Name=THERMO-SENSITIVE GENIC MALE STERILE 5;Oryzabase Gene Symbol Synonym(s)=TRZ1%2C OsTRZ1%2C OsaTRZ1%2C OsTMS5;Oryzabase Gene Name Synonym(s)=tRNase Z1%2C RNase ZS1%2C thermo-sensitive genic male sterile 5;Note=tRNase Z%2C Thermo-sensitive genic male sterility;Transcript_evidence=BT038741 (maize);ORF_evidence=Q6H8B1;InterPro=Ribonuclease Z/Hydroxyacylglutathione hydrolase-like (IPR036866),Metallo-beta-lactamase (IPR001279);Manual Curation=April 2%2C 2019;Literature_PMID=30894127,21781332;Oryzabase=15223;TENOR=Os02t0214300-00;KEGG=Os02t0214300-00 (EC:3.1.26.11)
Chr02	irgsp1_rep	five_prime_UTR	6397332	6397341	.	+	.	Parent=Os02t0214300-01
Chr02	irgsp1_rep	CDS	6397342	6397821	.	+	0	Parent=Os02t0214300-01
Chr02	irgsp1_rep	CDS	6397927	6398022	.	+	0	Parent=Os02t0214300-01
Chr02	irgsp1_rep	CDS	6398132	6398245	.	+	0	Parent=Os02t0214300-01
Chr02	irgsp1_rep	CDS	6398623	6398691	.	+	0	Parent=Os02t0214300-01
Chr02	irgsp1_rep	CDS	6398791	6398865	.	+	0	Parent=Os02t0214300-01
Chr02	irgsp1_rep	CDS	6399162	6399236	.	+	0	Parent=Os02t0214300-01
Chr02	irgsp1_rep	three_prime_UTR	6399237	6399266	.	+	.	Parent=Os02t0214300-01
Chr02	irgsp1_rep	mRNA	6399412	6402186	.	-	.	ID=Os02t0214400-01;Name=Os02t0214400-01;Locus_id=Os02g0214400;RAP-DB Gene Symbol Synonym(s)=OsPLL3;RAP-DB Gene Name Synonym(s)=Pectate lyase-like 3;Oryzabase Gene Symbol Synonym(s)=OsPLL3%2C PLL3;Oryzabase Gene Name Synonym(s)=Pectate lyase-like 3;Note=Pectate lyase-like protein%2C Pollen development;Transcript_evidence=AK101009;ORF_evidence=Q6H8B0;GO=Molecular Function: pectate lyase activity (GO:0030570);InterPro=Pectin lyase fold (IPR012334),Pectin lyase fold/virulence factor (IPR011050),AmbAllergen (IPR018082),Pectate lyase%2C N-terminal (IPR007524),Pectate lyase (IPR002022);NIAS_FLcDNA=J023148H12;Manual Curation=June 28%2C 2018;Literature_PMID=29943288;Oryzabase=22488;Expression=AK101009;TENOR=Os02t0214400-01;KEGG=Os02t0214400-01 (EC 4.2.2.2)
Chr02	irgsp1_rep	five_prime_UTR	6402021	6402186	.	-	.	Parent=Os02t0214400-01
Chr02	irgsp1_rep	CDS	6401806	6402020	.	-	0	Parent=Os02t0214400-01
Chr02	irgsp1_rep	CDS	6400758	6401457	.	-	1	Parent=Os02t0214400-01
Chr02	irgsp1_rep	CDS	6400370	6400576	.	-	0	Parent=Os02t0214400-01
Chr02	irgsp1_rep	CDS	6399729	6399947	.	-	0	Parent=Os02t0214400-01
Chr02	irgsp1_rep	three_prime_UTR	6399412	6399728	.	-	.	Parent=Os02t0214400-01
Chr02	irgsp1_rep	mRNA	6404019	6405861	.	+	.	ID=Os02t0214500-01;Name=Os02t0214500-01;Locus_id=Os02g0214500;CGSNL Gene Symbol=TMS5;CGSNL Gene Name=THERMOSENSITIVE MALE STERILITY 5;Oryzabase Gene Symbol Synonym(s)=tms5%2C NAC18%2C ONAC023%2C ONAC23%2C NAC23%2C TMS5/ONAC023%2C OsEnS-30;Oryzabase Gene Name Synonym(s)=thermosensitive male sterility5%2C NAC domain-containing protein 18%2C NAC domain-containing protein 023%2C NAC domain-containing protein 23%2C endosperm-specific gene 30;Note=No apical meristem (NAM) protein domain containing protein.;Transcript_evidence=AK107283 (DDBJ%2C Best hit);ORF_evidence=B8AE67 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=002-126-B03;Oryzabase=2773;Expression=AK107283;TENOR=Os02t0214500-01;KEGG=Os02t0214500-01
Chr02	irgsp1_rep	five_prime_UTR	6404019	6404082	.	+	.	Parent=Os02t0214500-01
Chr02	irgsp1_rep	CDS	6404083	6404257	.	+	0	Parent=Os02t0214500-01
Chr02	irgsp1_rep	CDS	6404990	6405573	.	+	2	Parent=Os02t0214500-01
Chr02	irgsp1_rep	three_prime_UTR	6405574	6405861	.	+	.	Parent=Os02t0214500-01
Chr02	irgsp1_rep	mRNA	6423113	6423389	.	-	.	ID=Os02t0214633-00;Name=Os02t0214633-00;Locus_id=Os02g0214633;CGSNL Gene Symbol=RLCK67;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 67;Oryzabase Gene Symbol Synonym(s)=OsRLCK67;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 67;Note=Similar to Leucine Rich Repeat family protein.;Transcript_evidence=DQ119305 (DDBJ);ORF_evidence=Q2R2D5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);Oryzabase=18783;TENOR=Os02t0214633-00
Chr02	irgsp1_rep	five_prime_UTR	6423368	6423389	.	-	.	Parent=Os02t0214633-00
Chr02	irgsp1_rep	CDS	6423113	6423367	.	-	0	Parent=Os02t0214633-00
Chr02	irgsp1_rep	mRNA	6424897	6430494	.	+	.	ID=Os02t0214766-00;Name=Os02t0214766-00;Locus_id=Os02g0214766;Note=Hypothetical protein.;Transcript_evidence=tplb0043n03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0214766-00
Chr02	irgsp1_rep	five_prime_UTR	6424897	6425017	.	+	.	Parent=Os02t0214766-00
Chr02	irgsp1_rep	five_prime_UTR	6425204	6425341	.	+	.	Parent=Os02t0214766-00
Chr02	irgsp1_rep	five_prime_UTR	6427135	6427230	.	+	.	Parent=Os02t0214766-00
Chr02	irgsp1_rep	five_prime_UTR	6427340	6427568	.	+	.	Parent=Os02t0214766-00
Chr02	irgsp1_rep	five_prime_UTR	6428401	6428795	.	+	.	Parent=Os02t0214766-00
Chr02	irgsp1_rep	CDS	6428796	6428852	.	+	0	Parent=Os02t0214766-00
Chr02	irgsp1_rep	CDS	6429946	6430494	.	+	0	Parent=Os02t0214766-00
Chr02	irgsp1_rep	mRNA	6424577	6430587	.	-	.	ID=Os02t0214900-01;Name=Os02t0214900-01;Locus_id=Os02g0214900;RAP-DB Gene Symbol Synonym(s)=HDAC3%2C OsHDAC3%2C HDA703;RAP-DB Gene Name Synonym(s)=CLASS-1 TYPE HISTONE DEACETYLASE 3%2C class-1 type histone deacetylase3;CGSNL Gene Symbol=HDAC3;CGSNL Gene Name=CLASS-1 TYPE HISTONE DEACETYLASE 3;Oryzabase Gene Symbol Synonym(s)=OsHDAC3%2C HDA703;Oryzabase Gene Name Synonym(s)=class-1 type histone deacetylase3;Note=Class-I type histone deacetylase%2C Reproductive development%2C Seed morphology;Transcript_evidence=AF513384 (DDBJ);ORF_evidence=Q7Y0Y6 (UniProt);GO=Biological Process: histone deacetylation (GO:0016575),Molecular Function: histone deacetylase activity (GO:0004407);InterPro=Histone deacetylase superfamily (IPR000286),Histone deacetylase (IPR003084),Histone deacetylase domain (IPR023801);Manual Curation=September 4%2C 2009;Literature_PMID=12581311,19664599;Oryzabase=3110;TENOR=Os02t0214900-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	6430492	6430587	.	-	.	Parent=Os02t0214900-01
Chr02	irgsp1_rep	CDS	6429937	6430491	.	-	0	Parent=Os02t0214900-01
Chr02	irgsp1_rep	CDS	6428410	6428850	.	-	0	Parent=Os02t0214900-01
Chr02	irgsp1_rep	CDS	6427340	6427570	.	-	0	Parent=Os02t0214900-01
Chr02	irgsp1_rep	CDS	6427139	6427230	.	-	0	Parent=Os02t0214900-01
Chr02	irgsp1_rep	CDS	6426996	6427056	.	-	1	Parent=Os02t0214900-01
Chr02	irgsp1_rep	CDS	6425202	6425279	.	-	0	Parent=Os02t0214900-01
Chr02	irgsp1_rep	CDS	6424945	6425019	.	-	0	Parent=Os02t0214900-01
Chr02	irgsp1_rep	three_prime_UTR	6424577	6424944	.	-	.	Parent=Os02t0214900-01
Chr02	irgsp1_rep	mRNA	6429608	6430544	.	-	.	ID=Os02t0214900-02;Name=Os02t0214900-02;Locus_id=Os02g0214900;CGSNL Gene Symbol=HDAC3;CGSNL Gene Name=CLASS-1 TYPE HISTONE DEACETYLASE 3;Oryzabase Gene Symbol Synonym(s)=OsHDAC3%2C HDA703;Oryzabase Gene Name Synonym(s)=class-1 type histone deacetylase3;Note=Similar to Histone deacetylase.;Transcript_evidence=AK071228 (DDBJ%2C Best hit);ORF_evidence=B8AE72 (UniProt);GO=Biological Process: histone deacetylation (GO:0016575),Molecular Function: histone deacetylase activity (GO:0004407);InterPro=Histone deacetylase superfamily (IPR000286),Histone deacetylase (IPR003084),Histone deacetylase domain (IPR023801);NIAS_FLcDNA=J023085P09;Oryzabase=3110;Expression=AK071228;TENOR=Os02t0214900-02
Chr02	irgsp1_rep	five_prime_UTR	6430492	6430544	.	-	.	Parent=Os02t0214900-02
Chr02	irgsp1_rep	CDS	6429850	6430491	.	-	0	Parent=Os02t0214900-02
Chr02	irgsp1_rep	three_prime_UTR	6429608	6429849	.	-	.	Parent=Os02t0214900-02
Chr02	irgsp1_rep	mRNA	6433242	6441693	.	-	.	ID=Os02t0215000-01;Name=Os02t0215000-01;Locus_id=Os02g0215000;Note=Conserved hypothetical protein.;Transcript_evidence=AK072483 (DDBJ%2C Best hit);ORF_evidence=Q6H899 (UniProt);NIAS_FLcDNA=J023125G06;Expression=AK072483;TENOR=Os02t0215000-01;KEGG=Os02t0215000-01
Chr02	irgsp1_rep	five_prime_UTR	6441507	6441693	.	-	.	Parent=Os02t0215000-01
Chr02	irgsp1_rep	CDS	6441410	6441506	.	-	0	Parent=Os02t0215000-01
Chr02	irgsp1_rep	CDS	6440535	6441352	.	-	2	Parent=Os02t0215000-01
Chr02	irgsp1_rep	CDS	6440254	6440434	.	-	0	Parent=Os02t0215000-01
Chr02	irgsp1_rep	CDS	6439425	6439537	.	-	2	Parent=Os02t0215000-01
Chr02	irgsp1_rep	CDS	6439188	6439292	.	-	0	Parent=Os02t0215000-01
Chr02	irgsp1_rep	CDS	6438684	6438753	.	-	0	Parent=Os02t0215000-01
Chr02	irgsp1_rep	CDS	6438158	6438213	.	-	2	Parent=Os02t0215000-01
Chr02	irgsp1_rep	CDS	6436846	6436896	.	-	0	Parent=Os02t0215000-01
Chr02	irgsp1_rep	CDS	6436522	6436626	.	-	0	Parent=Os02t0215000-01
Chr02	irgsp1_rep	CDS	6436373	6436417	.	-	0	Parent=Os02t0215000-01
Chr02	irgsp1_rep	CDS	6436181	6436292	.	-	0	Parent=Os02t0215000-01
Chr02	irgsp1_rep	CDS	6435485	6435678	.	-	2	Parent=Os02t0215000-01
Chr02	irgsp1_rep	CDS	6434875	6434961	.	-	0	Parent=Os02t0215000-01
Chr02	irgsp1_rep	CDS	6433845	6434015	.	-	0	Parent=Os02t0215000-01
Chr02	irgsp1_rep	three_prime_UTR	6433242	6433844	.	-	.	Parent=Os02t0215000-01
Chr02	irgsp1_rep	mRNA	6442988	6443886	.	-	.	ID=Os02t0215050-01;Name=Os02t0215050-01;Locus_id=Os02g0215050;Note=Hypothetical gene.;Transcript_evidence=AK073192 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033021P10;Expression=AK073192;TENOR=Os02t0215050-01;KEGG=Os02t0215050-01
Chr02	irgsp1_rep	five_prime_UTR	6443258	6443886	.	-	.	Parent=Os02t0215050-01
Chr02	irgsp1_rep	CDS	6443036	6443257	.	-	0	Parent=Os02t0215050-01
Chr02	irgsp1_rep	three_prime_UTR	6442988	6443035	.	-	.	Parent=Os02t0215050-01
Chr02	irgsp1_rep	mRNA	6443131	6445361	.	+	.	ID=Os02t0215100-01;Name=Os02t0215100-01;Locus_id=Os02g0215100;Note=Hypothetical protein.;Transcript_evidence=AK110993 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=002-174-D12;Expression=AK110993;TENOR=Os02t0215100-01;KEGG=Os02t0215100-01
Chr02	irgsp1_rep	five_prime_UTR	6443131	6443167	.	+	.	Parent=Os02t0215100-01
Chr02	irgsp1_rep	CDS	6443168	6443590	.	+	0	Parent=Os02t0215100-01
Chr02	irgsp1_rep	three_prime_UTR	6443591	6445361	.	+	.	Parent=Os02t0215100-01
Chr02	irgsp1_rep	mRNA	6447086	6452632	.	+	.	ID=Os02t0215200-01;Name=Os02t0215200-01;Locus_id=Os02g0215200;RAP-DB Gene Symbol Synonym(s)=HDAC2%2C OsHDAC2%2C HDA710;RAP-DB Gene Name Synonym(s)=CLASS-1 TYPE HISTONE DEACETYLASE 2%2C class-1 type histone deacetylase2;CGSNL Gene Symbol=HDAC2;CGSNL Gene Name=CLASS-1 TYPE HISTONE DEACETYLASE 2;Oryzabase Gene Symbol Synonym(s)=OsHDAC2%2C HDA710%2C OsHDA710;Oryzabase Gene Name Synonym(s)=class-1 type histone deacetylase2;Note=Class-I type histone deacetylase%2C Vegetative growth;Transcript_evidence=AF513383 (DDBJ);ORF_evidence=Q7Y0Y7 (UniProt);GO=Biological Process: histone deacetylation (GO:0016575),Molecular Function: histone deacetylase activity (GO:0004407);InterPro=Histone deacetylase superfamily (IPR000286),Histone deacetylase (IPR003084),Histone deacetylase domain (IPR023801);Manual Curation=September 4%2C 2009;Literature_PMID=12581311,19664599;Oryzabase=3109;TENOR=Os02t0215200-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	6447086	6447216	.	+	.	Parent=Os02t0215200-01
Chr02	irgsp1_rep	CDS	6447217	6447771	.	+	0	Parent=Os02t0215200-01
Chr02	irgsp1_rep	CDS	6448736	6449176	.	+	0	Parent=Os02t0215200-01
Chr02	irgsp1_rep	CDS	6449935	6450165	.	+	0	Parent=Os02t0215200-01
Chr02	irgsp1_rep	CDS	6450282	6450373	.	+	0	Parent=Os02t0215200-01
Chr02	irgsp1_rep	CDS	6450455	6450515	.	+	1	Parent=Os02t0215200-01
Chr02	irgsp1_rep	CDS	6452441	6452557	.	+	0	Parent=Os02t0215200-01
Chr02	irgsp1_rep	three_prime_UTR	6452558	6452632	.	+	.	Parent=Os02t0215200-01
Chr02	irgsp1_rep	mRNA	6447083	6453014	.	+	.	ID=Os02t0215200-02;Name=Os02t0215200-02;Locus_id=Os02g0215200;CGSNL Gene Symbol=HDAC2;CGSNL Gene Name=CLASS-1 TYPE HISTONE DEACETYLASE 2;Oryzabase Gene Symbol Synonym(s)=OsHDAC2%2C HDA710%2C OsHDA710;Oryzabase Gene Name Synonym(s)=class-1 type histone deacetylase2;Note=Similar to Histone deacetylase.;Transcript_evidence=AK103097 (DDBJ%2C Best hit);ORF_evidence=B9F497 (UniProt);GO=Biological Process: histone deacetylation (GO:0016575),Molecular Function: histone deacetylase activity (GO:0004407);InterPro=Histone deacetylase superfamily (IPR000286),Histone deacetylase (IPR003084),Histone deacetylase domain (IPR023801);NIAS_FLcDNA=J033118M13;Oryzabase=3109;Expression=AK103097;TENOR=Os02t0215200-02;KEGG=Os02t0215200-02 (EC:3.5.1.98)
Chr02	irgsp1_rep	five_prime_UTR	6447083	6447216	.	+	.	Parent=Os02t0215200-02
Chr02	irgsp1_rep	CDS	6447217	6447771	.	+	0	Parent=Os02t0215200-02
Chr02	irgsp1_rep	CDS	6448736	6449176	.	+	0	Parent=Os02t0215200-02
Chr02	irgsp1_rep	CDS	6449935	6450165	.	+	0	Parent=Os02t0215200-02
Chr02	irgsp1_rep	CDS	6450282	6450373	.	+	0	Parent=Os02t0215200-02
Chr02	irgsp1_rep	CDS	6450455	6450515	.	+	1	Parent=Os02t0215200-02
Chr02	irgsp1_rep	CDS	6452441	6452518	.	+	0	Parent=Os02t0215200-02
Chr02	irgsp1_rep	CDS	6452666	6452737	.	+	0	Parent=Os02t0215200-02
Chr02	irgsp1_rep	three_prime_UTR	6452738	6453014	.	+	.	Parent=Os02t0215200-02
Chr02	irgsp1_rep	mRNA	6447078	6453167	.	+	.	ID=Os02t0215200-03;Name=Os02t0215200-03;Locus_id=Os02g0215200;CGSNL Gene Symbol=HDAC2;CGSNL Gene Name=CLASS-1 TYPE HISTONE DEACETYLASE 2;Oryzabase Gene Symbol Synonym(s)=OsHDAC2%2C HDA710%2C OsHDA710;Oryzabase Gene Name Synonym(s)=class-1 type histone deacetylase2;Note=Similar to Histone deacetylase.;Transcript_evidence=AK064000 (DDBJ%2C Best hit);ORF_evidence=B9F497 (UniProt);InterPro=Histone deacetylase superfamily (IPR000286),Histone deacetylase domain (IPR023801);NIAS_FLcDNA=001-124-F07;Oryzabase=3109;Expression=AK064000;TENOR=Os02t0215200-03
Chr02	irgsp1_rep	five_prime_UTR	6447078	6447216	.	+	.	Parent=Os02t0215200-03
Chr02	irgsp1_rep	CDS	6447217	6447536	.	+	0	Parent=Os02t0215200-03
Chr02	irgsp1_rep	CDS	6447707	6447770	.	+	1	Parent=Os02t0215200-03
Chr02	irgsp1_rep	three_prime_UTR	6447771	6447771	.	+	.	Parent=Os02t0215200-03
Chr02	irgsp1_rep	three_prime_UTR	6448736	6449176	.	+	.	Parent=Os02t0215200-03
Chr02	irgsp1_rep	three_prime_UTR	6449935	6450165	.	+	.	Parent=Os02t0215200-03
Chr02	irgsp1_rep	three_prime_UTR	6450282	6450373	.	+	.	Parent=Os02t0215200-03
Chr02	irgsp1_rep	three_prime_UTR	6450455	6450515	.	+	.	Parent=Os02t0215200-03
Chr02	irgsp1_rep	three_prime_UTR	6452441	6452518	.	+	.	Parent=Os02t0215200-03
Chr02	irgsp1_rep	three_prime_UTR	6452666	6453167	.	+	.	Parent=Os02t0215200-03
Chr02	irgsp1_rep	mRNA	6447214	6450374	.	-	.	ID=Os02t0215300-00;Name=Os02t0215300-00;Locus_id=Os02g0215300;Note=Hypothetical protein.;Transcript_evidence=tplb0043n03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0215300-00
Chr02	irgsp1_rep	five_prime_UTR	6450263	6450374	.	-	.	Parent=Os02t0215300-00
Chr02	irgsp1_rep	five_prime_UTR	6449937	6450145	.	-	.	Parent=Os02t0215300-00
Chr02	irgsp1_rep	five_prime_UTR	6448791	6449180	.	-	.	Parent=Os02t0215300-00
Chr02	irgsp1_rep	CDS	6448734	6448790	.	-	0	Parent=Os02t0215300-00
Chr02	irgsp1_rep	CDS	6447214	6447762	.	-	0	Parent=Os02t0215300-00
Chr02	irgsp1_rep	mRNA	6468567	6473301	.	-	.	ID=Os02t0215400-01;Name=Os02t0215400-01;Locus_id=Os02g0215400;Note=Hypothetical protein.;Transcript_evidence=AK102434 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033093J01;Expression=AK102434;TENOR=Os02t0215400-01;KEGG=Os02t0215400-01
Chr02	irgsp1_rep	five_prime_UTR	6473090	6473301	.	-	.	Parent=Os02t0215400-01
Chr02	irgsp1_rep	five_prime_UTR	6472477	6472546	.	-	.	Parent=Os02t0215400-01
Chr02	irgsp1_rep	five_prime_UTR	6469935	6471430	.	-	.	Parent=Os02t0215400-01
Chr02	irgsp1_rep	CDS	6469602	6469934	.	-	0	Parent=Os02t0215400-01
Chr02	irgsp1_rep	three_prime_UTR	6469467	6469601	.	-	.	Parent=Os02t0215400-01
Chr02	irgsp1_rep	three_prime_UTR	6468567	6469389	.	-	.	Parent=Os02t0215400-01
Chr02	irgsp1_rep	mRNA	6468826	6472843	.	+	.	ID=Os02t0215500-01;Name=Os02t0215500-01;Locus_id=Os02g0215500;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK102255 (DDBJ%2C Best hit);ORF_evidence=A2X2F1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033088H24;TENOR=Os02t0215500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	6468826	6468948	.	+	.	Parent=Os02t0215500-01
Chr02	irgsp1_rep	CDS	6468949	6471946	.	+	0	Parent=Os02t0215500-01
Chr02	irgsp1_rep	CDS	6472218	6472636	.	+	2	Parent=Os02t0215500-01
Chr02	irgsp1_rep	three_prime_UTR	6472637	6472843	.	+	.	Parent=Os02t0215500-01
Chr02	irgsp1_rep	mRNA	6473995	6475502	.	+	.	ID=Os02t0215600-01;Name=Os02t0215600-01;Locus_id=Os02g0215600;Note=Conserved hypothetical protein.;Transcript_evidence=AK110959 (DDBJ%2C Best hit);ORF_evidence=Q5Z5C8 (UniProt);NIAS_FLcDNA=002-174-A10;Expression=AK110959;TENOR=Os02t0215600-01;KEGG=Os02t0215600-01
Chr02	irgsp1_rep	five_prime_UTR	6473995	6475062	.	+	.	Parent=Os02t0215600-01
Chr02	irgsp1_rep	five_prime_UTR	6475237	6475255	.	+	.	Parent=Os02t0215600-01
Chr02	irgsp1_rep	CDS	6475256	6475405	.	+	0	Parent=Os02t0215600-01
Chr02	irgsp1_rep	three_prime_UTR	6475406	6475502	.	+	.	Parent=Os02t0215600-01
Chr02	irgsp1_rep	mRNA	6473606	6475388	.	-	.	ID=Os02t0215650-00;Name=Os02t0215650-00;Locus_id=Os02g0215650;Note=Similar to OSIGBa0092M08.11 protein.;Transcript_evidence=EU948095 (DDBJ);ORF_evidence=Q01I41 (UniProt);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842);InterPro=U box domain (IPR003613),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);TENOR=Os02t0215650-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	6474862	6475388	.	-	0	Parent=Os02t0215650-00
Chr02	irgsp1_rep	CDS	6473606	6473759	.	-	1	Parent=Os02t0215650-00
Chr02	irgsp1_rep	mRNA	6476685	6480097	.	-	.	ID=Os02t0215700-01;Name=Os02t0215700-01;Locus_id=Os02g0215700;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK099402 (DDBJ%2C Best hit);ORF_evidence=A2X2F2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013001F09;TENOR=Os02t0215700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	6480096	6480097	.	-	.	Parent=Os02t0215700-01
Chr02	irgsp1_rep	CDS	6477524	6480095	.	-	0	Parent=Os02t0215700-01
Chr02	irgsp1_rep	CDS	6476919	6477319	.	-	2	Parent=Os02t0215700-01
Chr02	irgsp1_rep	three_prime_UTR	6476685	6476918	.	-	.	Parent=Os02t0215700-01
Chr02	irgsp1_rep	mRNA	6485609	6485982	.	-	.	ID=Os02t0215801-00;Name=Os02t0215801-00;Locus_id=Os02g0215801;Note=Non-protein coding transcript.;Transcript_evidence=CT835477 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os02t0215801-00
Chr02	irgsp1_rep	exon	6485609	6485982	.	-	.	Parent=Os02t0215801-00
Chr02	irgsp1_rep	mRNA	6488457	6490577	.	+	.	ID=Os02t0215900-01;Name=Os02t0215900-01;Locus_id=Os02g0215900;Oryzabase Gene Symbol Synonym(s)=OsGIRL1%2C OsGIRL1-1%2C OsGIRL1-2%2C OsGIRL1-3;Oryzabase Gene Name Synonym(s)=gamma-ray induced LRR-RLK1%2C gamma-ray induced Leucine-rich repeat receptor-like kinase 1;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK064556 (DDBJ%2C Best hit);ORF_evidence=Q6YUZ7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=002-112-C05;Oryzabase=18222;TENOR=Os02t0215900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	6488457	6488537	.	+	.	Parent=Os02t0215900-01
Chr02	irgsp1_rep	CDS	6488538	6489147	.	+	0	Parent=Os02t0215900-01
Chr02	irgsp1_rep	CDS	6489243	6489622	.	+	2	Parent=Os02t0215900-01
Chr02	irgsp1_rep	three_prime_UTR	6489623	6490577	.	+	.	Parent=Os02t0215900-01
Chr02	irgsp1_rep	mRNA	6490616	6496493	.	-	.	ID=Os02t0215950-01;Name=Os02t0215950-01;Locus_id=Os02g0215950;Note=Hypothetical gene.;Transcript_evidence=AK242759 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090051K07;TENOR=Os02t0215950-01;KEGG=Os02t0215950-01
Chr02	irgsp1_rep	five_prime_UTR	6496428	6496493	.	-	.	Parent=Os02t0215950-01
Chr02	irgsp1_rep	CDS	6496150	6496427	.	-	0	Parent=Os02t0215950-01
Chr02	irgsp1_rep	CDS	6494389	6494419	.	-	1	Parent=Os02t0215950-01
Chr02	irgsp1_rep	three_prime_UTR	6491015	6494388	.	-	.	Parent=Os02t0215950-01
Chr02	irgsp1_rep	three_prime_UTR	6490616	6490932	.	-	.	Parent=Os02t0215950-01
Chr02	irgsp1_rep	mRNA	6491390	6495136	.	+	.	ID=Os02t0216000-00;Name=Os02t0216000-00;Locus_id=Os02g0216000;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6YUZ6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os02t0216000-00;KEGG=Os02t0216000-00
Chr02	irgsp1_rep	CDS	6491390	6494501	.	+	0	Parent=Os02t0216000-00
Chr02	irgsp1_rep	CDS	6494757	6495136	.	+	2	Parent=Os02t0216000-00
Chr02	irgsp1_rep	mRNA	6496679	6498016	.	-	.	ID=Os02t0216100-00;Name=Os02t0216100-00;Locus_id=Os02g0216100;Note=Conserved hypothetical protein.;Transcript_evidence=AK068568 (DDBJ%2C Secondary hit);ORF_evidence=A3A4J7 (UniProt);TENOR=Os02t0216100-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	6497652	6498016	.	-	.	Parent=Os02t0216100-00
Chr02	irgsp1_rep	CDS	6497454	6497651	.	-	0	Parent=Os02t0216100-00
Chr02	irgsp1_rep	CDS	6497315	6497446	.	-	0	Parent=Os02t0216100-00
Chr02	irgsp1_rep	CDS	6497016	6497309	.	-	0	Parent=Os02t0216100-00
Chr02	irgsp1_rep	three_prime_UTR	6496679	6497015	.	-	.	Parent=Os02t0216100-00
Chr02	irgsp1_rep	mRNA	6496937	6498264	.	+	.	ID=Os02t0216150-00;Name=Os02t0216150-00;Locus_id=Os02g0216150;Note=Conserved hypothetical protein.;Transcript_evidence=AK100220 (DDBJ%2C Secondary hit);ORF_evidence=NP_001172864.1 (RefSeq);TENOR=Os02t0216150-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	6496937	6497309	.	+	.	Parent=Os02t0216150-00
Chr02	irgsp1_rep	five_prime_UTR	6497315	6497446	.	+	.	Parent=Os02t0216150-00
Chr02	irgsp1_rep	five_prime_UTR	6497454	6498063	.	+	.	Parent=Os02t0216150-00
Chr02	irgsp1_rep	CDS	6498064	6498264	.	+	0	Parent=Os02t0216150-00
Chr02	irgsp1_rep	mRNA	6501546	6504022	.	-	.	ID=Os02t0216200-01;Name=Os02t0216200-01;Locus_id=Os02g0216200;Note=Conserved hypothetical protein.;Transcript_evidence=AK108648 (DDBJ%2C Best hit);ORF_evidence=Q53NG0 (UniProt);NIAS_FLcDNA=002-148-B12;TENOR=Os02t0216200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	6503351	6504022	.	-	.	Parent=Os02t0216200-01
Chr02	irgsp1_rep	CDS	6503227	6503350	.	-	0	Parent=Os02t0216200-01
Chr02	irgsp1_rep	CDS	6502968	6503002	.	-	2	Parent=Os02t0216200-01
Chr02	irgsp1_rep	three_prime_UTR	6502918	6502967	.	-	.	Parent=Os02t0216200-01
Chr02	irgsp1_rep	three_prime_UTR	6502617	6502736	.	-	.	Parent=Os02t0216200-01
Chr02	irgsp1_rep	three_prime_UTR	6502052	6502173	.	-	.	Parent=Os02t0216200-01
Chr02	irgsp1_rep	three_prime_UTR	6501546	6501910	.	-	.	Parent=Os02t0216200-01
Chr02	irgsp1_rep	mRNA	6505111	6505588	.	-	.	ID=Os02t0216250-00;Name=Os02t0216250-00;Locus_id=Os02g0216250;Note=Similar to calmodulin.;Transcript_evidence=AF031482 (DDBJ);ORF_evidence=NP_001105455.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand-like domain (IPR011992),EF-HAND 2 (IPR018249);TENOR=Os02t0216250-00
Chr02	irgsp1_rep	CDS	6505497	6505588	.	-	0	Parent=Os02t0216250-00
Chr02	irgsp1_rep	CDS	6505208	6505250	.	-	1	Parent=Os02t0216250-00
Chr02	irgsp1_rep	three_prime_UTR	6505111	6505207	.	-	.	Parent=Os02t0216250-00
Chr02	irgsp1_rep	mRNA	6510945	6524586	.	-	.	ID=Os02t0216300-01;Name=Os02t0216300-01;Locus_id=Os02g0216300;Note=Similar to cDNA clone:J023088C01%2C full insert sequence.;Transcript_evidence=AK066371 (DDBJ%2C Best hit);ORF_evidence=B7EQF1 (UniProt);NIAS_FLcDNA=J013065L09;TENOR=Os02t0216300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	6523916	6524586	.	-	.	Parent=Os02t0216300-01
Chr02	irgsp1_rep	CDS	6523914	6523915	.	-	0	Parent=Os02t0216300-01
Chr02	irgsp1_rep	CDS	6511642	6512170	.	-	1	Parent=Os02t0216300-01
Chr02	irgsp1_rep	CDS	6511559	6511573	.	-	0	Parent=Os02t0216300-01
Chr02	irgsp1_rep	three_prime_UTR	6510945	6511558	.	-	.	Parent=Os02t0216300-01
Chr02	irgsp1_rep	mRNA	6509728	6513827	.	-	.	ID=Os02t0216300-04;Name=Os02t0216300-04;Locus_id=Os02g0216300;Note=Similar to cDNA clone:J023088C01%2C full insert sequence.;Transcript_evidence=AK070589 (DDBJ%2C Best hit),AK060081 (DDBJ%2C Best hit),AK061737 (DDBJ%2C Best hit),AK104214 (DDBJ%2C Best hit);ORF_evidence=B7EQF1 (UniProt);NIAS_FLcDNA=J023063I08,006-306-D02,001-038-D11,006-305-G03;Expression=AK070589;TENOR=Os02t0216300-04;KEGG=Os02t0216300-04
Chr02	irgsp1_rep	five_prime_UTR	6513722	6513827	.	-	.	Parent=Os02t0216300-04
Chr02	irgsp1_rep	CDS	6513669	6513721	.	-	0	Parent=Os02t0216300-04
Chr02	irgsp1_rep	CDS	6511642	6512170	.	-	1	Parent=Os02t0216300-04
Chr02	irgsp1_rep	CDS	6510378	6510383	.	-	0	Parent=Os02t0216300-04
Chr02	irgsp1_rep	three_prime_UTR	6509728	6510377	.	-	.	Parent=Os02t0216300-04
Chr02	irgsp1_rep	mRNA	6508894	6513827	.	-	.	ID=Os02t0216300-05;Name=Os02t0216300-05;Locus_id=Os02g0216300;Note=Similar to cDNA clone:J023088C01%2C full insert sequence.;Transcript_evidence=AK061431 (DDBJ%2C Best hit);ORF_evidence=B7EQF1 (UniProt);NIAS_FLcDNA=006-306-H07;Expression=AK061431;TENOR=Os02t0216300-05;KEGG=Os02t0216300-05
Chr02	irgsp1_rep	five_prime_UTR	6513722	6513827	.	-	.	Parent=Os02t0216300-05
Chr02	irgsp1_rep	CDS	6513669	6513721	.	-	0	Parent=Os02t0216300-05
Chr02	irgsp1_rep	CDS	6511642	6512170	.	-	1	Parent=Os02t0216300-05
Chr02	irgsp1_rep	CDS	6509337	6509384	.	-	0	Parent=Os02t0216300-05
Chr02	irgsp1_rep	three_prime_UTR	6508894	6509336	.	-	.	Parent=Os02t0216300-05
Chr02	irgsp1_rep	mRNA	6508874	6513827	.	-	.	ID=Os02t0216300-07;Name=Os02t0216300-07;Locus_id=Os02g0216300;Note=Similar to cDNA clone:J023088C01%2C full insert sequence.;Transcript_evidence=AK102313 (DDBJ%2C Best hit),AK060730 (DDBJ%2C Best hit),AK102090 (DDBJ%2C Best hit);ORF_evidence=B7EQF1 (UniProt);NIAS_FLcDNA=J033090E15,001-032-A03,J033082P21;Expression=AK102313;TENOR=Os02t0216300-07;KEGG=Os02t0216300-07
Chr02	irgsp1_rep	five_prime_UTR	6513722	6513827	.	-	.	Parent=Os02t0216300-07
Chr02	irgsp1_rep	CDS	6513669	6513721	.	-	0	Parent=Os02t0216300-07
Chr02	irgsp1_rep	CDS	6511633	6512170	.	-	1	Parent=Os02t0216300-07
Chr02	irgsp1_rep	three_prime_UTR	6508874	6511632	.	-	.	Parent=Os02t0216300-07
Chr02	irgsp1_rep	mRNA	6510930	6513827	.	-	.	ID=Os02t0216300-09;Name=Os02t0216300-09;Locus_id=Os02g0216300;Note=Similar to cDNA clone:001-032-A03%2C full insert sequence.;Transcript_evidence=AK100425 (DDBJ%2C Best hit),AK066602 (DDBJ%2C Best hit);ORF_evidence=B7E5A6 (UniProt);NIAS_FLcDNA=J023088C01,J013071E20;Expression=AK100425;TENOR=Os02t0216300-09;KEGG=Os02t0216300-09
Chr02	irgsp1_rep	five_prime_UTR	6512269	6513827	.	-	.	Parent=Os02t0216300-09
Chr02	irgsp1_rep	CDS	6511633	6512268	.	-	0	Parent=Os02t0216300-09
Chr02	irgsp1_rep	three_prime_UTR	6510930	6511632	.	-	.	Parent=Os02t0216300-09
Chr02	irgsp1_rep	mRNA	6515931	6519173	.	+	.	ID=Os02t0216400-01;Name=Os02t0216400-01;Locus_id=Os02g0216400;Note=Conserved hypothetical protein.;Transcript_evidence=AK108357 (DDBJ%2C Best hit);ORF_evidence=Q2QS86 (UniProt);NIAS_FLcDNA=002-142-C06;TENOR=Os02t0216400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	6515931	6516159	.	+	.	Parent=Os02t0216400-01
Chr02	irgsp1_rep	five_prime_UTR	6518487	6518732	.	+	.	Parent=Os02t0216400-01
Chr02	irgsp1_rep	CDS	6518733	6518798	.	+	0	Parent=Os02t0216400-01
Chr02	irgsp1_rep	three_prime_UTR	6518799	6519173	.	+	.	Parent=Os02t0216400-01
Chr02	irgsp1_rep	mRNA	6530913	6533054	.	-	.	ID=Os02t0216500-01;Name=Os02t0216500-01;Locus_id=Os02g0216500;Note=Non-protein coding transcript.;Transcript_evidence=AK100162 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023021B20;TENOR=Os02t0216500-01
Chr02	irgsp1_rep	exon	6531355	6533054	.	-	.	Parent=Os02t0216500-01
Chr02	irgsp1_rep	exon	6530913	6531275	.	-	.	Parent=Os02t0216500-01
Chr02	irgsp1_rep	mRNA	6529761	6533007	.	-	.	ID=Os02t0216500-02;Name=Os02t0216500-02;Locus_id=Os02g0216500;Note=Similar to cDNA clone:002-145-A11%2C full insert sequence.;Transcript_evidence=AK103179 (DDBJ%2C Best hit);ORF_evidence=B7F1E4 (UniProt);NIAS_FLcDNA=J033121I11;TENOR=Os02t0216500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	6532391	6533007	.	-	.	Parent=Os02t0216500-02
Chr02	irgsp1_rep	five_prime_UTR	6531355	6531415	.	-	.	Parent=Os02t0216500-02
Chr02	irgsp1_rep	five_prime_UTR	6530624	6530738	.	-	.	Parent=Os02t0216500-02
Chr02	irgsp1_rep	five_prime_UTR	6530479	6530551	.	-	.	Parent=Os02t0216500-02
Chr02	irgsp1_rep	CDS	6530415	6530478	.	-	0	Parent=Os02t0216500-02
Chr02	irgsp1_rep	CDS	6530033	6530052	.	-	2	Parent=Os02t0216500-02
Chr02	irgsp1_rep	three_prime_UTR	6529761	6530032	.	-	.	Parent=Os02t0216500-02
Chr02	irgsp1_rep	mRNA	6529685	6532965	.	-	.	ID=Os02t0216500-03;Name=Os02t0216500-03;Locus_id=Os02g0216500;Note=Hypothetical protein.;Transcript_evidence=AK108561 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-145-A11;TENOR=Os02t0216500-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	6532391	6532965	.	-	.	Parent=Os02t0216500-03
Chr02	irgsp1_rep	five_prime_UTR	6531355	6531415	.	-	.	Parent=Os02t0216500-03
Chr02	irgsp1_rep	five_prime_UTR	6530479	6530738	.	-	.	Parent=Os02t0216500-03
Chr02	irgsp1_rep	CDS	6530164	6530478	.	-	0	Parent=Os02t0216500-03
Chr02	irgsp1_rep	three_prime_UTR	6529685	6530163	.	-	.	Parent=Os02t0216500-03
Chr02	irgsp1_rep	mRNA	6533712	6535405	.	-	.	ID=Os02t0216600-01;Name=Os02t0216600-01;Locus_id=Os02g0216600;Note=Similar to Protein ROOT HAIR DEFECTIVE 3.;Transcript_evidence=AK064515 (DDBJ%2C Best hit);ORF_evidence=Q0JLS6 (UniProt);NIAS_FLcDNA=002-111-F05;TENOR=Os02t0216600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	6534925	6535405	.	-	.	Parent=Os02t0216600-01
Chr02	irgsp1_rep	CDS	6534754	6534924	.	-	0	Parent=Os02t0216600-01
Chr02	irgsp1_rep	three_prime_UTR	6533712	6534753	.	-	.	Parent=Os02t0216600-01
Chr02	irgsp1_rep	mRNA	6535937	6538109	.	-	.	ID=Os02t0216700-01;Name=Os02t0216700-01;Locus_id=Os02g0216700;Note=Hypothetical gene.;Transcript_evidence=AK069059 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023004K04;Expression=AK069059;TENOR=Os02t0216700-01;KEGG=Os02t0216700-01
Chr02	irgsp1_rep	CDS	6537585	6538109	.	-	0	Parent=Os02t0216700-01
Chr02	irgsp1_rep	three_prime_UTR	6535937	6537584	.	-	.	Parent=Os02t0216700-01
Chr02	irgsp1_rep	mRNA	6553815	6557969	.	-	.	ID=Os02t0217250-00;Name=Os02t0217250-00;Locus_id=Os02g0217250;Note=Hypothetical protein.;Transcript_evidence=tplb0024g24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0217250-00
Chr02	irgsp1_rep	five_prime_UTR	6557387	6557969	.	-	.	Parent=Os02t0217250-00
Chr02	irgsp1_rep	CDS	6557307	6557386	.	-	0	Parent=Os02t0217250-00
Chr02	irgsp1_rep	CDS	6556044	6556376	.	-	1	Parent=Os02t0217250-00
Chr02	irgsp1_rep	CDS	6553987	6554248	.	-	1	Parent=Os02t0217250-00
Chr02	irgsp1_rep	three_prime_UTR	6553815	6553986	.	-	.	Parent=Os02t0217250-00
Chr02	irgsp1_rep	mRNA	6559488	6562188	.	+	.	ID=Os02t0217400-01;Name=Os02t0217400-01;Locus_id=Os02g0217400;Note=CytoChrome P450 family protein.;Transcript_evidence=AK107104 (DDBJ%2C Best hit);ORF_evidence=Q2QLJ2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=002-122-A09;Expression=AK107104;TENOR=Os02t0217400-01;KEGG=Os02t0217400-01
Chr02	irgsp1_rep	five_prime_UTR	6559488	6559541	.	+	.	Parent=Os02t0217400-01
Chr02	irgsp1_rep	CDS	6559542	6560015	.	+	0	Parent=Os02t0217400-01
Chr02	irgsp1_rep	CDS	6560955	6562007	.	+	0	Parent=Os02t0217400-01
Chr02	irgsp1_rep	three_prime_UTR	6562008	6562188	.	+	.	Parent=Os02t0217400-01
Chr02	irgsp1_rep	mRNA	6559511	6561928	.	-	.	ID=Os02t0217425-00;Name=Os02t0217425-00;Locus_id=Os02g0217425;Note=Hypothetical protein.;Transcript_evidence=tplb0024g24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0217425-00
Chr02	irgsp1_rep	five_prime_UTR	6560992	6561928	.	-	.	Parent=Os02t0217425-00
Chr02	irgsp1_rep	five_prime_UTR	6560022	6560047	.	-	.	Parent=Os02t0217425-00
Chr02	irgsp1_rep	CDS	6559527	6560021	.	-	0	Parent=Os02t0217425-00
Chr02	irgsp1_rep	three_prime_UTR	6559511	6559526	.	-	.	Parent=Os02t0217425-00
Chr02	irgsp1_rep	mRNA	6568146	6572499	.	+	.	ID=Os02t0217500-01;Name=Os02t0217500-01;Locus_id=Os02g0217500;Note=Pre-mRNA cleavage complex II Clp1 family protein.;Transcript_evidence=AK058267 (DDBJ%2C Best hit);ORF_evidence=B6T4T8 (UniProt);GO=Cellular Component: Golgi apparatus part (GO:0044431);InterPro=Clathrin adaptor%2C gamma-adaptin%2C appendage (IPR008153),Pre-mRNA cleavage complex II Clp1 (IPR010655);NIAS_FLcDNA=001-013-A11;Expression=AK058267;TENOR=Os02t0217500-01;KEGG=Os02t0217500-01
Chr02	irgsp1_rep	five_prime_UTR	6568146	6568261	.	+	.	Parent=Os02t0217500-01
Chr02	irgsp1_rep	CDS	6568262	6568450	.	+	0	Parent=Os02t0217500-01
Chr02	irgsp1_rep	CDS	6568585	6568653	.	+	0	Parent=Os02t0217500-01
Chr02	irgsp1_rep	CDS	6568769	6568870	.	+	0	Parent=Os02t0217500-01
Chr02	irgsp1_rep	CDS	6569286	6569527	.	+	0	Parent=Os02t0217500-01
Chr02	irgsp1_rep	CDS	6569957	6570095	.	+	1	Parent=Os02t0217500-01
Chr02	irgsp1_rep	CDS	6570198	6570251	.	+	0	Parent=Os02t0217500-01
Chr02	irgsp1_rep	CDS	6570735	6570872	.	+	0	Parent=Os02t0217500-01
Chr02	irgsp1_rep	CDS	6571215	6571447	.	+	0	Parent=Os02t0217500-01
Chr02	irgsp1_rep	CDS	6572104	6572148	.	+	1	Parent=Os02t0217500-01
Chr02	irgsp1_rep	CDS	6572231	6572318	.	+	1	Parent=Os02t0217500-01
Chr02	irgsp1_rep	three_prime_UTR	6572319	6572499	.	+	.	Parent=Os02t0217500-01
Chr02	irgsp1_rep	mRNA	6573100	6577600	.	-	.	ID=Os02t0217600-01;Name=Os02t0217600-01;Locus_id=Os02g0217600;CGSNL Gene Symbol=PP2A-3;CGSNL Gene Name=PROTEIN PHOSPHATASE 2A CATALYTIC SUBUNIT 3;Oryzabase Gene Symbol Synonym(s)=OsPP2A-3%2C PP2A3%2C OsPP20;Oryzabase Gene Name Synonym(s)=protein phosphatase 2A catalytic subunit 3%2C Serine/threonine-protein phosphatase PP2A-3 catalytic subunit%2C Protein phosphatase 20;Note=Similar to Isoform 2 of Serine/threonine-protein phosphatase PP2A-3 catalytic subunit.;Transcript_evidence=AK060905 (DDBJ%2C Best hit);ORF_evidence=B9F4A7 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Metallophosphoesterase domain (IPR004843),Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (IPR006186);NIAS_FLcDNA=001-035-F04;Oryzabase=6264;Expression=AK060905;TENOR=Os02t0217600-01;KEGG=Os02t0217600-01 (EC:3.1.3.16)
Chr02	irgsp1_rep	five_prime_UTR	6577436	6577600	.	-	.	Parent=Os02t0217600-01
Chr02	irgsp1_rep	CDS	6577235	6577435	.	-	0	Parent=Os02t0217600-01
Chr02	irgsp1_rep	CDS	6577180	6577195	.	-	0	Parent=Os02t0217600-01
Chr02	irgsp1_rep	CDS	6576342	6576456	.	-	2	Parent=Os02t0217600-01
Chr02	irgsp1_rep	CDS	6575612	6575720	.	-	1	Parent=Os02t0217600-01
Chr02	irgsp1_rep	CDS	6575453	6575530	.	-	0	Parent=Os02t0217600-01
Chr02	irgsp1_rep	CDS	6574316	6574507	.	-	0	Parent=Os02t0217600-01
Chr02	irgsp1_rep	CDS	6573285	6573458	.	-	0	Parent=Os02t0217600-01
Chr02	irgsp1_rep	three_prime_UTR	6573100	6573284	.	-	.	Parent=Os02t0217600-01
Chr02	irgsp1_rep	mRNA	6572799	6577587	.	-	.	ID=Os02t0217600-02;Name=Os02t0217600-02;Locus_id=Os02g0217600;CGSNL Gene Symbol=PP2A-3;CGSNL Gene Name=PROTEIN PHOSPHATASE 2A CATALYTIC SUBUNIT 3;Oryzabase Gene Symbol Synonym(s)=OsPP2A-3%2C PP2A3%2C OsPP20;Oryzabase Gene Name Synonym(s)=protein phosphatase 2A catalytic subunit 3%2C Serine/threonine-protein phosphatase PP2A-3 catalytic subunit%2C Protein phosphatase 20;Note=Similar to Protein phosphatase 2A.;Transcript_evidence=AK072676 (DDBJ%2C Best hit);ORF_evidence=Q0E2S4 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Metallophosphoesterase domain (IPR004843),Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (IPR006186);NIAS_FLcDNA=J023136C13;Oryzabase=6264;Expression=AK072676;TENOR=Os02t0217600-02;KEGG=Os02t0217600-02 (EC:3.1.3.16)
Chr02	irgsp1_rep	five_prime_UTR	6577436	6577587	.	-	.	Parent=Os02t0217600-02
Chr02	irgsp1_rep	CDS	6577180	6577435	.	-	0	Parent=Os02t0217600-02
Chr02	irgsp1_rep	CDS	6576342	6576456	.	-	2	Parent=Os02t0217600-02
Chr02	irgsp1_rep	CDS	6575612	6575720	.	-	1	Parent=Os02t0217600-02
Chr02	irgsp1_rep	CDS	6575453	6575530	.	-	0	Parent=Os02t0217600-02
Chr02	irgsp1_rep	CDS	6574316	6574507	.	-	0	Parent=Os02t0217600-02
Chr02	irgsp1_rep	CDS	6573285	6573458	.	-	0	Parent=Os02t0217600-02
Chr02	irgsp1_rep	three_prime_UTR	6572799	6573284	.	-	.	Parent=Os02t0217600-02
Chr02	irgsp1_rep	mRNA	6573267	6575712	.	+	.	ID=Os02t0217666-00;Name=Os02t0217666-00;Locus_id=Os02g0217666;Note=Non-protein coding transcript.;Transcript_evidence=BT018461 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0217666-00
Chr02	irgsp1_rep	exon	6573267	6573454	.	+	.	Parent=Os02t0217666-00
Chr02	irgsp1_rep	exon	6574312	6574529	.	+	.	Parent=Os02t0217666-00
Chr02	irgsp1_rep	exon	6575558	6575712	.	+	.	Parent=Os02t0217666-00
Chr02	irgsp1_rep	mRNA	6582277	6587300	.	+	.	ID=Os02t0217800-00;Name=Os02t0217800-00;Locus_id=Os02g0217800;Note=Similar to NOL1R.;Transcript_evidence=AK363303 (DDBJ);ORF_evidence=NP_001151492.1 (RefSeq);InterPro=Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (IPR001678),RNA (C5-cytosine) methyltransferase (IPR023267);TENOR=Os02t0217800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	6582277	6582327	.	+	.	Parent=Os02t0217800-00
Chr02	irgsp1_rep	CDS	6582328	6582595	.	+	0	Parent=Os02t0217800-00
Chr02	irgsp1_rep	CDS	6583147	6583205	.	+	2	Parent=Os02t0217800-00
Chr02	irgsp1_rep	CDS	6583381	6583431	.	+	0	Parent=Os02t0217800-00
Chr02	irgsp1_rep	CDS	6583666	6583798	.	+	0	Parent=Os02t0217800-00
Chr02	irgsp1_rep	CDS	6584433	6584518	.	+	2	Parent=Os02t0217800-00
Chr02	irgsp1_rep	CDS	6584666	6584764	.	+	0	Parent=Os02t0217800-00
Chr02	irgsp1_rep	CDS	6584855	6584908	.	+	0	Parent=Os02t0217800-00
Chr02	irgsp1_rep	CDS	6585476	6585620	.	+	0	Parent=Os02t0217800-00
Chr02	irgsp1_rep	CDS	6586098	6586159	.	+	2	Parent=Os02t0217800-00
Chr02	irgsp1_rep	CDS	6586270	6586357	.	+	0	Parent=Os02t0217800-00
Chr02	irgsp1_rep	CDS	6586545	6586628	.	+	2	Parent=Os02t0217800-00
Chr02	irgsp1_rep	CDS	6586720	6586881	.	+	2	Parent=Os02t0217800-00
Chr02	irgsp1_rep	CDS	6587000	6587226	.	+	2	Parent=Os02t0217800-00
Chr02	irgsp1_rep	three_prime_UTR	6587227	6587300	.	+	.	Parent=Os02t0217800-00
Chr02	irgsp1_rep	mRNA	6582336	6587253	.	-	.	ID=Os02t0217850-00;Name=Os02t0217850-00;Locus_id=Os02g0217850;Note=Non-protein coding transcript.;Transcript_evidence=tplb0045j15 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os02t0217850-00
Chr02	irgsp1_rep	exon	6586998	6587253	.	-	.	Parent=Os02t0217850-00
Chr02	irgsp1_rep	exon	6586709	6586879	.	-	.	Parent=Os02t0217850-00
Chr02	irgsp1_rep	exon	6586541	6586619	.	-	.	Parent=Os02t0217850-00
Chr02	irgsp1_rep	exon	6586273	6586349	.	-	.	Parent=Os02t0217850-00
Chr02	irgsp1_rep	exon	6586108	6586162	.	-	.	Parent=Os02t0217850-00
Chr02	irgsp1_rep	exon	6585472	6585629	.	-	.	Parent=Os02t0217850-00
Chr02	irgsp1_rep	exon	6584851	6584901	.	-	.	Parent=Os02t0217850-00
Chr02	irgsp1_rep	exon	6584678	6584760	.	-	.	Parent=Os02t0217850-00
Chr02	irgsp1_rep	exon	6583671	6584531	.	-	.	Parent=Os02t0217850-00
Chr02	irgsp1_rep	exon	6583362	6583443	.	-	.	Parent=Os02t0217850-00
Chr02	irgsp1_rep	exon	6583147	6583187	.	-	.	Parent=Os02t0217850-00
Chr02	irgsp1_rep	exon	6582336	6582595	.	-	.	Parent=Os02t0217850-00
Chr02	irgsp1_rep	mRNA	6587377	6588245	.	-	.	ID=Os02t0217900-00;Name=Os02t0217900-00;Locus_id=Os02g0217900;Note=Similar to Cytosolic class II small heat shock protein 4 (Fragment).;Transcript_evidence=CT835445 (DDBJ%2C Best hit);ORF_evidence=Q6Z6L5 (UniProt);InterPro=Heat shock protein Hsp20 (IPR002068),HSP20-like chaperone (IPR008978);TENOR=Os02t0217900-00;KEGG=Os02t0217900-00
Chr02	irgsp1_rep	five_prime_UTR	6588066	6588245	.	-	.	Parent=Os02t0217900-00
Chr02	irgsp1_rep	CDS	6587538	6588065	.	-	0	Parent=Os02t0217900-00
Chr02	irgsp1_rep	three_prime_UTR	6587377	6587537	.	-	.	Parent=Os02t0217900-00
Chr02	irgsp1_rep	mRNA	6599225	6606516	.	+	.	ID=Os02t0218200-01;Name=Os02t0218200-01;Locus_id=Os02g0218200;Note=Peptidase M1%2C membrane alanine aminopeptidase family protein.;Transcript_evidence=AK066996 (DDBJ%2C Best hit);ORF_evidence=NP_195035.2 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Biological Process: lipid transport (GO:0006869),Molecular Function: lipid transporter activity (GO:0005319),Molecular Function: metallopeptidase activity (GO:0008237),Molecular Function: zinc ion binding (GO:0008270);InterPro=Peptidase M1%2C alanine aminopeptidase/leukotriene A4 hydrolase (IPR001930),Vitellinogen%2C superhelical (IPR011030),Peptidase M1%2C membrane alanine aminopeptidase%2C N-terminal (IPR014782);NIAS_FLcDNA=J013089H24;Expression=AK066996;TENOR=Os02t0218200-01;KEGG=Os02t0218200-01 (EC:3.4.11.-)
Chr02	irgsp1_rep	five_prime_UTR	6599225	6599326	.	+	.	Parent=Os02t0218200-01
Chr02	irgsp1_rep	CDS	6599327	6599563	.	+	0	Parent=Os02t0218200-01
Chr02	irgsp1_rep	CDS	6600146	6600291	.	+	0	Parent=Os02t0218200-01
Chr02	irgsp1_rep	CDS	6600467	6600569	.	+	1	Parent=Os02t0218200-01
Chr02	irgsp1_rep	CDS	6601307	6601493	.	+	0	Parent=Os02t0218200-01
Chr02	irgsp1_rep	CDS	6601599	6601692	.	+	2	Parent=Os02t0218200-01
Chr02	irgsp1_rep	CDS	6602190	6602343	.	+	1	Parent=Os02t0218200-01
Chr02	irgsp1_rep	CDS	6602651	6602755	.	+	0	Parent=Os02t0218200-01
Chr02	irgsp1_rep	CDS	6602837	6602953	.	+	0	Parent=Os02t0218200-01
Chr02	irgsp1_rep	CDS	6603148	6603261	.	+	0	Parent=Os02t0218200-01
Chr02	irgsp1_rep	CDS	6603791	6603973	.	+	0	Parent=Os02t0218200-01
Chr02	irgsp1_rep	CDS	6604107	6604386	.	+	0	Parent=Os02t0218200-01
Chr02	irgsp1_rep	CDS	6604465	6604586	.	+	2	Parent=Os02t0218200-01
Chr02	irgsp1_rep	CDS	6604663	6604760	.	+	0	Parent=Os02t0218200-01
Chr02	irgsp1_rep	CDS	6604841	6605018	.	+	1	Parent=Os02t0218200-01
Chr02	irgsp1_rep	CDS	6605339	6605453	.	+	0	Parent=Os02t0218200-01
Chr02	irgsp1_rep	CDS	6605556	6605623	.	+	2	Parent=Os02t0218200-01
Chr02	irgsp1_rep	CDS	6605725	6605802	.	+	0	Parent=Os02t0218200-01
Chr02	irgsp1_rep	CDS	6605886	6605960	.	+	0	Parent=Os02t0218200-01
Chr02	irgsp1_rep	CDS	6606056	6606238	.	+	0	Parent=Os02t0218200-01
Chr02	irgsp1_rep	three_prime_UTR	6606239	6606516	.	+	.	Parent=Os02t0218200-01
Chr02	irgsp1_rep	mRNA	6604841	6606516	.	+	.	ID=Os02t0218200-02;Name=Os02t0218200-02;Locus_id=Os02g0218200;Note=Similar to APM1 (AMINOPEPTIDASE M1).;Transcript_evidence=AK060032 (DDBJ%2C Best hit);ORF_evidence=NP_195035.2 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Biological Process: lipid transport (GO:0006869),Molecular Function: lipid transporter activity (GO:0005319);InterPro=Peptidase M1%2C alanine aminopeptidase/leukotriene A4 hydrolase (IPR001930),Vitellinogen%2C superhelical (IPR011030);NIAS_FLcDNA=006-303-H06;Expression=AK060032;TENOR=Os02t0218200-02;KEGG=Os02t0218200-02 (EC:3.4.11.-)
Chr02	irgsp1_rep	five_prime_UTR	6604841	6604841	.	+	.	Parent=Os02t0218200-02
Chr02	irgsp1_rep	CDS	6604842	6605018	.	+	0	Parent=Os02t0218200-02
Chr02	irgsp1_rep	CDS	6605339	6605453	.	+	0	Parent=Os02t0218200-02
Chr02	irgsp1_rep	CDS	6605556	6605623	.	+	2	Parent=Os02t0218200-02
Chr02	irgsp1_rep	CDS	6605725	6605802	.	+	0	Parent=Os02t0218200-02
Chr02	irgsp1_rep	CDS	6605886	6605960	.	+	0	Parent=Os02t0218200-02
Chr02	irgsp1_rep	CDS	6606056	6606238	.	+	0	Parent=Os02t0218200-02
Chr02	irgsp1_rep	three_prime_UTR	6606239	6606516	.	+	.	Parent=Os02t0218200-02
Chr02	irgsp1_rep	mRNA	6608071	6610614	.	+	.	ID=Os02t0218300-01;Name=Os02t0218300-01;Locus_id=Os02g0218300;Note=Non-protein coding transcript.;Transcript_evidence=AK068198 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013136N07;TENOR=Os02t0218300-01
Chr02	irgsp1_rep	exon	6608071	6608398	.	+	.	Parent=Os02t0218300-01
Chr02	irgsp1_rep	exon	6608847	6608935	.	+	.	Parent=Os02t0218300-01
Chr02	irgsp1_rep	exon	6609755	6610614	.	+	.	Parent=Os02t0218300-01
Chr02	irgsp1_rep	mRNA	6609459	6613930	.	-	.	ID=Os02t0218400-01;Name=Os02t0218400-01;Locus_id=Os02g0218400;CGSNL Gene Symbol=RLCK68;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 68;Oryzabase Gene Symbol Synonym(s)=OsRLCK68;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 68;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK068947 (DDBJ%2C Best hit);ORF_evidence=XP_002873544.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: response to stress (GO:0006950),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),UspA (IPR006016),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023001A13;Oryzabase=18784;Expression=AK068947;TENOR=Os02t0218400-01;KEGG=Os02t0218400-01
Chr02	irgsp1_rep	five_prime_UTR	6613822	6613930	.	-	.	Parent=Os02t0218400-01
Chr02	irgsp1_rep	CDS	6613632	6613821	.	-	0	Parent=Os02t0218400-01
Chr02	irgsp1_rep	CDS	6613081	6613151	.	-	2	Parent=Os02t0218400-01
Chr02	irgsp1_rep	CDS	6612809	6612930	.	-	0	Parent=Os02t0218400-01
Chr02	irgsp1_rep	CDS	6612524	6612706	.	-	1	Parent=Os02t0218400-01
Chr02	irgsp1_rep	CDS	6612014	6612329	.	-	1	Parent=Os02t0218400-01
Chr02	irgsp1_rep	CDS	6611793	6611894	.	-	0	Parent=Os02t0218400-01
Chr02	irgsp1_rep	CDS	6611280	6611708	.	-	0	Parent=Os02t0218400-01
Chr02	irgsp1_rep	CDS	6609801	6610580	.	-	0	Parent=Os02t0218400-01
Chr02	irgsp1_rep	three_prime_UTR	6609459	6609800	.	-	.	Parent=Os02t0218400-01
Chr02	irgsp1_rep	mRNA	6611603	6614191	.	+	.	ID=Os02t0218500-01;Name=Os02t0218500-01;Locus_id=Os02g0218500;Note=Hypothetical protein.;Transcript_evidence=AK110965 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-174-B05;Expression=AK110965;TENOR=Os02t0218500-01;KEGG=Os02t0218500-01
Chr02	irgsp1_rep	five_prime_UTR	6611603	6612802	.	+	.	Parent=Os02t0218500-01
Chr02	irgsp1_rep	CDS	6612803	6612944	.	+	0	Parent=Os02t0218500-01
Chr02	irgsp1_rep	CDS	6613601	6614028	.	+	2	Parent=Os02t0218500-01
Chr02	irgsp1_rep	three_prime_UTR	6614029	6614191	.	+	.	Parent=Os02t0218500-01
Chr02	irgsp1_rep	mRNA	6616276	6622982	.	-	.	ID=Os02t0218550-00;Name=Os02t0218550-00;Locus_id=Os02g0218550;Note=Hypothetical protein.;Transcript_evidence=tplb0048h01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0218550-00
Chr02	irgsp1_rep	five_prime_UTR	6622802	6622982	.	-	.	Parent=Os02t0218550-00
Chr02	irgsp1_rep	five_prime_UTR	6621909	6622664	.	-	.	Parent=Os02t0218550-00
Chr02	irgsp1_rep	five_prime_UTR	6621347	6621756	.	-	.	Parent=Os02t0218550-00
Chr02	irgsp1_rep	five_prime_UTR	6618663	6618783	.	-	.	Parent=Os02t0218550-00
Chr02	irgsp1_rep	five_prime_UTR	6618211	6618532	.	-	.	Parent=Os02t0218550-00
Chr02	irgsp1_rep	five_prime_UTR	6618002	6618136	.	-	.	Parent=Os02t0218550-00
Chr02	irgsp1_rep	CDS	6617995	6618001	.	-	0	Parent=Os02t0218550-00
Chr02	irgsp1_rep	CDS	6616857	6616954	.	-	2	Parent=Os02t0218550-00
Chr02	irgsp1_rep	CDS	6616638	6616757	.	-	0	Parent=Os02t0218550-00
Chr02	irgsp1_rep	CDS	6616276	6616507	.	-	0	Parent=Os02t0218550-00
Chr02	irgsp1_rep	mRNA	6621779	6623047	.	+	.	ID=Os02t0218600-00;Name=Os02t0218600-00;Locus_id=Os02g0218600;CGSNL Gene Symbol=RLCK69;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 69;Oryzabase Gene Symbol Synonym(s)=OsPUB48%2C OsRLCK69;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 48%2C U-box protein 48%2C Receptor-like Cytoplasmic Kinase 69;Note=Similar to Protein kinase.;Transcript_evidence=BT035782 (DDBJ);ORF_evidence=C3SAC8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),U box domain (IPR003613),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=17839;TENOR=Os02t0218600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	6621779	6622675	.	+	0	Parent=Os02t0218600-00
Chr02	irgsp1_rep	CDS	6622815	6623009	.	+	0	Parent=Os02t0218600-00
Chr02	irgsp1_rep	three_prime_UTR	6623010	6623047	.	+	.	Parent=Os02t0218600-00
Chr02	irgsp1_rep	mRNA	6628383	6630103	.	+	.	ID=Os02t0218700-01;Name=Os02t0218700-01;Locus_id=Os02g0218700;RAP-DB Gene Symbol Synonym(s)=HPL2%2C AOS3%2C OsHPL2%2C OsAOS3;RAP-DB Gene Name Synonym(s)=HYDROPEROXIDE LYASE 2%2C ALLENE OXIDE SYNTHASE 3%2C allene oxide synthase3%2C Allene oxide synthase 3;CGSNL Gene Symbol=AOS3;CGSNL Gene Name=ALLENE OXIDE SYNTHASE 3;Oryzabase Gene Symbol Synonym(s)=OsAOS3%2C HPL2%2C OsHPL2%2C OsAOS3/OsHPL2;Oryzabase Gene Name Synonym(s)=allene oxide synthase3%2C Allene oxide synthase 3%2C HYDROPEROXIDE LYASE 2;Note=Allene oxide synthase (CYP74A3)%2C Fatty acid 9-/13-hydroperoxide lyase (CYP74C)%2C Biosynthesis of jasmonic acid (JA)%2C Plant defense;Transcript_evidence=AK107161;ORF_evidence=Q6Z6L1,Q0E2R7;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: monooxygenase activity (GO:0004497),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group IV (IPR002403);NIAS_FLcDNA=002-124-F02;Manual Curation=November 10%2C 2009;Literature_PMID=14988482,16116284,16531481;Oryzabase=8979;Expression=AK107161;TENOR=Os02t0218700-01;KEGG=Os02t0218700-01 (EC:4.2.1.92)
Chr02	irgsp1_rep	five_prime_UTR	6628383	6628454	.	+	.	Parent=Os02t0218700-01
Chr02	irgsp1_rep	CDS	6628455	6629957	.	+	0	Parent=Os02t0218700-01
Chr02	irgsp1_rep	three_prime_UTR	6629958	6630103	.	+	.	Parent=Os02t0218700-01
Chr02	irgsp1_rep	mRNA	6637969	6639572	.	-	.	ID=Os02t0218750-00;Name=Os02t0218750-00;Locus_id=Os02g0218750;Note=Hypothetical protein.;Transcript_evidence=EU972984 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0218750-00
Chr02	irgsp1_rep	five_prime_UTR	6639572	6639572	.	-	.	Parent=Os02t0218750-00
Chr02	irgsp1_rep	CDS	6639023	6639571	.	-	0	Parent=Os02t0218750-00
Chr02	irgsp1_rep	three_prime_UTR	6637969	6639022	.	-	.	Parent=Os02t0218750-00
Chr02	irgsp1_rep	mRNA	6637973	6639828	.	+	.	ID=Os02t0218800-01;Name=Os02t0218800-01;Locus_id=Os02g0218800;RAP-DB Gene Symbol Synonym(s)=AOS4%2C HPL1%2C OsAOS4%2C CYP74A4%2C OsHPL1;RAP-DB Gene Name Synonym(s)=ALLENE OXIDE SYNTHASE 4%2C HYDROPEROXIDE LYASE%2C allene oxide synthase4%2C Allene oxide synthase 4%2C CytoChrome P450 74A4%2C Hydroperoxide dehydrase 4%2C hydroperoxide lyase 1;CGSNL Gene Symbol=AOS4;CGSNL Gene Name=ALLENE OXIDE SYNTHASE 4;Oryzabase Gene Symbol Synonym(s)=OsAOS4%2C CYP74A4%2C OsHPL1%2C HPL1;Oryzabase Gene Name Synonym(s)=allene oxide synthase4%2C Allene oxide synthase 4%2C CytoChrome P450 74A4%2C Hydroperoxide dehydrase 4%2C hydroperoxide lyase 1%2C hydroperoxide lyase;Note=Allene oxide synthase (CYP74A4)%2C Fatty acid 9-/13-hydroperoxide lyase (CYP74C)%2C Biosynthesis of jasmonic acid (JA)%2C Plant defense;Transcript_evidence=AK105964;ORF_evidence=Q6Z6K9,Q0E2R6;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: monooxygenase activity (GO:0004497),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group IV (IPR002403);NIAS_FLcDNA=001-205-E05;Manual Curation=November 10%2C 2009;Literature_PMID=14988482,16116284,16531481;Oryzabase=3073;Expression=AK105964;TENOR=Os02t0218800-01;KEGG=Os02t0218800-01 (EC:4.2.1.92)
Chr02	irgsp1_rep	five_prime_UTR	6637973	6638044	.	+	.	Parent=Os02t0218800-01
Chr02	irgsp1_rep	CDS	6638045	6639577	.	+	0	Parent=Os02t0218800-01
Chr02	irgsp1_rep	three_prime_UTR	6639578	6639828	.	+	.	Parent=Os02t0218800-01
Chr02	irgsp1_rep	mRNA	6644227	6645926	.	-	.	ID=Os02t0219000-01;Name=Os02t0219000-01;Locus_id=Os02g0219000;Note=Interferon-related developmental regulator domain containing protein.;Transcript_evidence=AK064689 (DDBJ%2C Best hit);ORF_evidence=A2X2H4 (UniProt);InterPro=Interferon-related developmental regulator%2C N-terminal (IPR007701);NIAS_FLcDNA=002-116-E06;Expression=AK064689;TENOR=Os02t0219000-01;KEGG=Os02t0219000-01
Chr02	irgsp1_rep	five_prime_UTR	6645866	6645926	.	-	.	Parent=Os02t0219000-01
Chr02	irgsp1_rep	CDS	6644462	6645865	.	-	0	Parent=Os02t0219000-01
Chr02	irgsp1_rep	three_prime_UTR	6644227	6644461	.	-	.	Parent=Os02t0219000-01
Chr02	irgsp1_rep	mRNA	6648213	6649777	.	-	.	ID=Os02t0219050-00;Name=Os02t0219050-00;Locus_id=Os02g0219050;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001172860.1 (RefSeq);InterPro=Interferon-related developmental regulator%2C N-terminal (IPR007701);TENOR=Os02t0219050-00;KEGG=Os02t0219050-00
Chr02	irgsp1_rep	CDS	6648443	6649777	.	-	0	Parent=Os02t0219050-00
Chr02	irgsp1_rep	CDS	6648213	6648317	.	-	0	Parent=Os02t0219050-00
Chr02	irgsp1_rep	mRNA	6656266	6659388	.	-	.	ID=Os02t0219200-01;Name=Os02t0219200-01;Locus_id=Os02g0219200;CGSNL Gene Symbol=BGAL7;CGSNL Gene Name=BETA-GALACTOSIDASE 7;Oryzabase Gene Symbol Synonym(s)=OsBgal7%2C OsBGal7%2C CARSR12;Oryzabase Gene Name Synonym(s)=Beta-galactosidase 4%2C Lactase 4;Note=Similar to Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid beta- galactosidase) (Exo-(1-->4)-beta-D-galactanase).;Transcript_evidence=AK059059 (DDBJ%2C Best hit);ORF_evidence=A3A4M1 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 35 (IPR001944),Galactose-binding domain-like (IPR008979),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-021-F12;Oryzabase=8295;Expression=AK059059;TENOR=Os02t0219200-01;KEGG=Os02t0219200-01 (EC:3.2.1.23)
Chr02	irgsp1_rep	five_prime_UTR	6659388	6659388	.	-	.	Parent=Os02t0219200-01
Chr02	irgsp1_rep	CDS	6659361	6659387	.	-	0	Parent=Os02t0219200-01
Chr02	irgsp1_rep	CDS	6659135	6659223	.	-	0	Parent=Os02t0219200-01
Chr02	irgsp1_rep	CDS	6658935	6659040	.	-	1	Parent=Os02t0219200-01
Chr02	irgsp1_rep	CDS	6658753	6658840	.	-	0	Parent=Os02t0219200-01
Chr02	irgsp1_rep	CDS	6658484	6658602	.	-	2	Parent=Os02t0219200-01
Chr02	irgsp1_rep	CDS	6658237	6658401	.	-	0	Parent=Os02t0219200-01
Chr02	irgsp1_rep	CDS	6657976	6658145	.	-	0	Parent=Os02t0219200-01
Chr02	irgsp1_rep	CDS	6657778	6657881	.	-	1	Parent=Os02t0219200-01
Chr02	irgsp1_rep	CDS	6657583	6657692	.	-	2	Parent=Os02t0219200-01
Chr02	irgsp1_rep	CDS	6657282	6657494	.	-	0	Parent=Os02t0219200-01
Chr02	irgsp1_rep	CDS	6656957	6657159	.	-	0	Parent=Os02t0219200-01
Chr02	irgsp1_rep	CDS	6656393	6656501	.	-	1	Parent=Os02t0219200-01
Chr02	irgsp1_rep	three_prime_UTR	6656266	6656392	.	-	.	Parent=Os02t0219200-01
Chr02	irgsp1_rep	mRNA	6655868	6658086	.	-	.	ID=Os02t0219200-02;Name=Os02t0219200-02;Locus_id=Os02g0219200;CGSNL Gene Symbol=BGAL7;CGSNL Gene Name=BETA-GALACTOSIDASE 7;Oryzabase Gene Symbol Synonym(s)=OsBgal7%2C OsBGal7%2C CARSR12;Oryzabase Gene Name Synonym(s)=Beta-galactosidase 4%2C Lactase 4;Note=Similar to Beta-galactosidase.;Transcript_evidence=AK059794 (DDBJ%2C Best hit);ORF_evidence=A3A4M1 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 35 (IPR001944),Galactose-binding domain-like (IPR008979);NIAS_FLcDNA=006-204-E08;Oryzabase=8295;Expression=AK059794;TENOR=Os02t0219200-02;KEGG=Os02t0219200-02
Chr02	irgsp1_rep	five_prime_UTR	6658086	6658086	.	-	.	Parent=Os02t0219200-02
Chr02	irgsp1_rep	CDS	6657976	6658085	.	-	0	Parent=Os02t0219200-02
Chr02	irgsp1_rep	CDS	6657778	6657881	.	-	1	Parent=Os02t0219200-02
Chr02	irgsp1_rep	CDS	6657583	6657692	.	-	2	Parent=Os02t0219200-02
Chr02	irgsp1_rep	CDS	6657282	6657494	.	-	0	Parent=Os02t0219200-02
Chr02	irgsp1_rep	CDS	6656957	6657159	.	-	0	Parent=Os02t0219200-02
Chr02	irgsp1_rep	CDS	6656393	6656501	.	-	1	Parent=Os02t0219200-02
Chr02	irgsp1_rep	three_prime_UTR	6655868	6656392	.	-	.	Parent=Os02t0219200-02
Chr02	irgsp1_rep	mRNA	6655977	6657650	.	-	.	ID=Os02t0219200-03;Name=Os02t0219200-03;Locus_id=Os02g0219200;CGSNL Gene Symbol=BGAL7;CGSNL Gene Name=BETA-GALACTOSIDASE 7;Oryzabase Gene Symbol Synonym(s)=OsBgal7%2C OsBGal7%2C CARSR12;Oryzabase Gene Name Synonym(s)=Beta-galactosidase 4%2C Lactase 4;Note=Similar to Beta-galactosidase.;Transcript_evidence=AK061043 (DDBJ%2C Best hit);ORF_evidence=A3A4M1 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 35 (IPR001944),Galactose-binding domain-like (IPR008979);NIAS_FLcDNA=006-205-D10;Oryzabase=8295;Expression=AK061043;TENOR=Os02t0219200-03;KEGG=Os02t0219200-03
Chr02	irgsp1_rep	five_prime_UTR	6657649	6657650	.	-	.	Parent=Os02t0219200-03
Chr02	irgsp1_rep	CDS	6657583	6657648	.	-	0	Parent=Os02t0219200-03
Chr02	irgsp1_rep	CDS	6657282	6657494	.	-	0	Parent=Os02t0219200-03
Chr02	irgsp1_rep	CDS	6656957	6657159	.	-	0	Parent=Os02t0219200-03
Chr02	irgsp1_rep	CDS	6656393	6656501	.	-	1	Parent=Os02t0219200-03
Chr02	irgsp1_rep	three_prime_UTR	6655977	6656392	.	-	.	Parent=Os02t0219200-03
Chr02	irgsp1_rep	mRNA	6656063	6659077	.	+	.	ID=Os02t0219300-01;Name=Os02t0219300-01;Locus_id=Os02g0219300;Note=Hypothetical protein.;Transcript_evidence=AK119269 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-130-A09;Expression=AK119269;TENOR=Os02t0219300-01;KEGG=Os02t0219300-01
Chr02	irgsp1_rep	five_prime_UTR	6656063	6656525	.	+	.	Parent=Os02t0219300-01
Chr02	irgsp1_rep	five_prime_UTR	6656971	6658176	.	+	.	Parent=Os02t0219300-01
Chr02	irgsp1_rep	CDS	6658177	6658446	.	+	0	Parent=Os02t0219300-01
Chr02	irgsp1_rep	three_prime_UTR	6658447	6659077	.	+	.	Parent=Os02t0219300-01
Chr02	irgsp1_rep	mRNA	6668862	6672904	.	-	.	ID=Os02t0219400-01;Name=Os02t0219400-01;Locus_id=Os02g0219400;RAP-DB Gene Symbol Synonym(s)=OsGPI8;CGSNL Gene Symbol=DF;CGSNL Gene Name=DROOPING AND FRAGILE;Oryzabase Gene Symbol Synonym(s)=GPI8%2C OsGPI8;Oryzabase Gene Name Synonym(s)=GPI transamidase catalytic subunit 8%2C drooping and fragile;Note=Ortholog of Arabidopsis GPI8%2C Putative catalytic subunit of glycosylphosphatidylinositol transamidase (GPI-T) complex%2C Biosynthesis and accumulation of cell wall material%2C cell shape%2C and cell division;Transcript_evidence=AK072526;ORF_evidence=Q6Z6K3;GO=Biological Process: proteolysis (GO:0006508),Molecular Function: peptidase activity (GO:0008233);InterPro=Peptidase C13%2C legumain (IPR001096);NIAS_FLcDNA=J023126A08;Manual Curation=January 15%2C 2020;Literature_PMID=31906256;Oryzabase=23450;Expression=AK072526;TENOR=Os02t0219400-01;KEGG=Os02t0219400-01
Chr02	irgsp1_rep	five_prime_UTR	6672754	6672904	.	-	.	Parent=Os02t0219400-01
Chr02	irgsp1_rep	CDS	6672581	6672753	.	-	0	Parent=Os02t0219400-01
Chr02	irgsp1_rep	CDS	6672317	6672358	.	-	1	Parent=Os02t0219400-01
Chr02	irgsp1_rep	CDS	6672074	6672218	.	-	1	Parent=Os02t0219400-01
Chr02	irgsp1_rep	CDS	6671627	6671856	.	-	0	Parent=Os02t0219400-01
Chr02	irgsp1_rep	CDS	6671402	6671459	.	-	1	Parent=Os02t0219400-01
Chr02	irgsp1_rep	CDS	6670403	6670480	.	-	0	Parent=Os02t0219400-01
Chr02	irgsp1_rep	CDS	6670217	6670305	.	-	0	Parent=Os02t0219400-01
Chr02	irgsp1_rep	CDS	6669548	6669629	.	-	1	Parent=Os02t0219400-01
Chr02	irgsp1_rep	CDS	6669286	6669465	.	-	0	Parent=Os02t0219400-01
Chr02	irgsp1_rep	CDS	6669079	6669216	.	-	0	Parent=Os02t0219400-01
Chr02	irgsp1_rep	three_prime_UTR	6668862	6669078	.	-	.	Parent=Os02t0219400-01
Chr02	irgsp1_rep	mRNA	6677118	6680011	.	+	.	ID=Os02t0219800-01;Name=Os02t0219800-01;Locus_id=Os02g0219800;CGSNL Gene Symbol=TET2;CGSNL Gene Name=TETRASPANIN 2;Oryzabase Gene Symbol Synonym(s)=OsTET2;Oryzabase Gene Name Synonym(s)=tetraspanin 2;Note=Tetraspanin domain containing protein.;Transcript_evidence=AK242431 (DDBJ%2C Best hit);ORF_evidence=NP_179548.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Tetraspanin (IPR018499);NIAS_FLcDNA=J080092B14;Oryzabase=20307;TENOR=Os02t0219800-01;KEGG=Os02t0219800-01
Chr02	irgsp1_rep	five_prime_UTR	6677118	6677195	.	+	.	Parent=Os02t0219800-01
Chr02	irgsp1_rep	CDS	6677196	6677702	.	+	0	Parent=Os02t0219800-01
Chr02	irgsp1_rep	CDS	6679450	6679755	.	+	0	Parent=Os02t0219800-01
Chr02	irgsp1_rep	three_prime_UTR	6679756	6680011	.	+	.	Parent=Os02t0219800-01
Chr02	irgsp1_rep	mRNA	6680305	6683027	.	-	.	ID=Os02t0219900-01;Name=Os02t0219900-01;Locus_id=Os02g0219900;Note=Similar to Epstein-Barr nuclear antigen-1 (EBNA-1).;Transcript_evidence=AK104393 (DDBJ%2C Best hit),AK060915 (DDBJ%2C Best hit),AK104206 (DDBJ%2C Best hit);ORF_evidence=C5XY39 (UniProt);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup (IPR006459),Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);NIAS_FLcDNA=006-202-B07,001-035-G06,006-304-G01;Expression=AK104393;TENOR=Os02t0219900-01;KEGG=Os02t0219900-01
Chr02	irgsp1_rep	five_prime_UTR	6682911	6683027	.	-	.	Parent=Os02t0219900-01
Chr02	irgsp1_rep	CDS	6682705	6682910	.	-	0	Parent=Os02t0219900-01
Chr02	irgsp1_rep	CDS	6682092	6682203	.	-	1	Parent=Os02t0219900-01
Chr02	irgsp1_rep	CDS	6680612	6680899	.	-	0	Parent=Os02t0219900-01
Chr02	irgsp1_rep	three_prime_UTR	6680305	6680611	.	-	.	Parent=Os02t0219900-01
Chr02	irgsp1_rep	mRNA	6680307	6682999	.	-	.	ID=Os02t0219900-02;Name=Os02t0219900-02;Locus_id=Os02g0219900;Note=Similar to Epstein-Barr nuclear antigen-1 (EBNA-1).;Transcript_evidence=AK099194 (DDBJ%2C Best hit);ORF_evidence=C5XY39 (UniProt);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup (IPR006459),Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);NIAS_FLcDNA=J023109D07;TENOR=Os02t0219900-02
Chr02	irgsp1_rep	five_prime_UTR	6682911	6682999	.	-	.	Parent=Os02t0219900-02
Chr02	irgsp1_rep	CDS	6682705	6682910	.	-	0	Parent=Os02t0219900-02
Chr02	irgsp1_rep	CDS	6682092	6682203	.	-	1	Parent=Os02t0219900-02
Chr02	irgsp1_rep	CDS	6680612	6680899	.	-	0	Parent=Os02t0219900-02
Chr02	irgsp1_rep	three_prime_UTR	6680307	6680611	.	-	.	Parent=Os02t0219900-02
Chr02	irgsp1_rep	mRNA	6687293	6688110	.	-	.	ID=Os02t0219950-00;Name=Os02t0219950-00;Locus_id=Os02g0219950;Note=Hypothetical protein.;Transcript_evidence=AK375091 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0219950-00
Chr02	irgsp1_rep	five_prime_UTR	6688104	6688110	.	-	.	Parent=Os02t0219950-00
Chr02	irgsp1_rep	CDS	6687534	6688103	.	-	0	Parent=Os02t0219950-00
Chr02	irgsp1_rep	three_prime_UTR	6687293	6687533	.	-	.	Parent=Os02t0219950-00
Chr02	irgsp1_rep	mRNA	6687558	6689362	.	+	.	ID=Os02t0220000-00;Name=Os02t0220000-00;Locus_id=Os02g0220000;CGSNL Gene Symbol=CKX6;CGSNL Gene Name=CYTOKININ  OXIDASE/DEHYDROGENASE 6;Oryzabase Gene Symbol Synonym(s)=OsCKX6;Oryzabase Gene Name Synonym(s)=cytokinin oxidase 6;Note=Similar to cytokinin oxidase1.;Transcript_evidence=Q6YW51 (UniProt);ORF_evidence=Q6YW51 (UniProt);GO=Biological Process: cytokinin metabolic process (GO:0009690),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: cytokinin dehydrogenase activity (GO:0019139),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Oxygen oxidoreductase covalent FAD-binding site (IPR006093),FAD linked oxidase%2C N-terminal (IPR006094),Cytokinin dehydrogenase 1%2C FAD/cytokinin binding domain (IPR015345),FAD-linked oxidase-like%2C C-terminal (IPR016164),FAD-binding%2C type 2 (IPR016166),FAD-binding%2C type 2%2C subdomain 1 (IPR016167),FAD-linked oxidase%2C FAD-binding%2C subdomain 2 (IPR016168);Oryzabase=8396;TENOR=Os02t0220000-00
Chr02	irgsp1_rep	CDS	6687558	6688146	.	+	0	Parent=Os02t0220000-00
Chr02	irgsp1_rep	CDS	6688243	6688649	.	+	2	Parent=Os02t0220000-00
Chr02	irgsp1_rep	CDS	6688775	6689362	.	+	0	Parent=Os02t0220000-00
Chr02	irgsp1_rep	mRNA	6693586	6694400	.	-	.	ID=Os02t0220050-00;Name=Os02t0220050-00;Locus_id=Os02g0220050;Note=Hypothetical protein.;Transcript_evidence=AK375091 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0220050-00
Chr02	irgsp1_rep	five_prime_UTR	6694186	6694400	.	-	.	Parent=Os02t0220050-00
Chr02	irgsp1_rep	CDS	6693778	6694185	.	-	0	Parent=Os02t0220050-00
Chr02	irgsp1_rep	three_prime_UTR	6693586	6693777	.	-	.	Parent=Os02t0220050-00
Chr02	irgsp1_rep	mRNA	6693857	6695685	.	+	.	ID=Os02t0220100-00;Name=Os02t0220100-00;Locus_id=Os02g0220100;CGSNL Gene Symbol=CKX7;CGSNL Gene Name=CYTOKININ  OXIDASE/DEHYDROGENASE 7;Oryzabase Gene Symbol Synonym(s)=OsCKX7;Oryzabase Gene Name Synonym(s)=cytokinin oxidase 7;Note=Similar to Cytokinin dehydrogenase 7.;Transcript_evidence=GU160403 (DDBJ);ORF_evidence=Q6YW50 (UniProt);GO=Biological Process: cytokinin metabolic process (GO:0009690),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: cytokinin dehydrogenase activity (GO:0019139),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Oxygen oxidoreductase covalent FAD-binding site (IPR006093),FAD linked oxidase%2C N-terminal (IPR006094),Cytokinin dehydrogenase 1%2C FAD/cytokinin binding domain (IPR015345),FAD-linked oxidase-like%2C C-terminal (IPR016164),FAD-binding%2C type 2 (IPR016166),FAD-binding%2C type 2%2C subdomain 1 (IPR016167),FAD-linked oxidase%2C FAD-binding%2C subdomain 2 (IPR016168);Oryzabase=8397;TENOR=Os02t0220100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	6693857	6694436	.	+	0	Parent=Os02t0220100-00
Chr02	irgsp1_rep	CDS	6694571	6695685	.	+	2	Parent=Os02t0220100-00
Chr02	irgsp1_rep	mRNA	6705753	6707433	.	-	.	ID=Os02t0220400-01;Name=Os02t0220400-01;Locus_id=Os02g0220400;RAP-DB Gene Symbol Synonym(s)=CGA1%2C Cga1%2C OsCga1%2C OsCGA1%2C OsGATA11%2C GATA11;RAP-DB Gene Name Synonym(s)=CYTOKININ GATA TRANSCRIPTION FACTOR 1%2C Cytokinin GATA Transcription Factor1%2C Cytokinin GATA Transcription Factor 1%2C GATA Transcription Factor 11%2C GATA factor 11%2C CYTOKININ-INDUCED GATA1;CGSNL Gene Symbol=CGA1;CGSNL Gene Name=CYTOKININ GATA TRANSCRIPTION FACTOR 1;Oryzabase Gene Symbol Synonym(s)=Cga1%2C OsCga1%2C OsCGA1%2C OsGATA11%2C GATA11;Oryzabase Gene Name Synonym(s)=Cytokinin GATA Transcription Factor1%2C Cytokinin GATA Transcription Factor 1%2C GATA Transcription Factor 11%2C GATA factor 11%2C CYTOKININ-INDUCED GATA1;Note=GATA transcription factor%2C Chloroplast development%2C Plant architecture;Transcript_evidence=AK099607;ORF_evidence=Q6YW48;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Zinc finger%2C GATA-type (IPR000679),Zinc finger%2C NHR/GATA-type (IPR013088);NIAS_FLcDNA=J013048G01;Manual Curation=April 7%2C 2014;Literature_PMID=23548780;Oryzabase=20485;TENOR=Os02t0220400-01;KEGG=Os02t0220400-01
Chr02	irgsp1_rep	five_prime_UTR	6707397	6707433	.	-	.	Parent=Os02t0220400-01
Chr02	irgsp1_rep	CDS	6707187	6707396	.	-	0	Parent=Os02t0220400-01
Chr02	irgsp1_rep	CDS	6706659	6707039	.	-	0	Parent=Os02t0220400-01
Chr02	irgsp1_rep	CDS	6705994	6706464	.	-	0	Parent=Os02t0220400-01
Chr02	irgsp1_rep	three_prime_UTR	6705753	6705993	.	-	.	Parent=Os02t0220400-01
Chr02	irgsp1_rep	mRNA	6713133	6716613	.	-	.	ID=Os02t0220450-00;Name=Os02t0220450-00;Locus_id=Os02g0220450;Note=Non-protein coding transcript.;Transcript_evidence=CT835462 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os02t0220450-00
Chr02	irgsp1_rep	exon	6716570	6716613	.	-	.	Parent=Os02t0220450-00
Chr02	irgsp1_rep	exon	6713133	6713611	.	-	.	Parent=Os02t0220450-00
Chr02	irgsp1_rep	mRNA	6716992	6720422	.	+	.	ID=Os02t0220500-01;Name=Os02t0220500-01;Locus_id=Os02g0220500;CGSNL Gene Symbol=EF1G;CGSNL Gene Name=ELONGATION FACTOR 1 GAMMA-LIKE PROTEIN;Oryzabase Gene Name Synonym(s)=elongation factor 1-gamma;Note=Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma).;Transcript_evidence=AK103901 (DDBJ%2C Best hit);ORF_evidence=B7SDI2 (UniProt);GO=Biological Process: translational elongation (GO:0006414),Cellular Component: eukaryotic translation elongation factor 1 complex (GO:0005853),Molecular Function: translation elongation factor activity (GO:0003746),Molecular Function: protein binding (GO:0005515);InterPro=Translation elongation factor EF1B%2C gamma chain%2C conserved (IPR001662),Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=J033150K18;Oryzabase=8988;TENOR=Os02t0220500-01;KEGG=Os02t0220500-01
Chr02	irgsp1_rep	five_prime_UTR	6716992	6717052	.	+	.	Parent=Os02t0220500-01
Chr02	irgsp1_rep	five_prime_UTR	6717175	6717226	.	+	.	Parent=Os02t0220500-01
Chr02	irgsp1_rep	CDS	6717227	6717235	.	+	0	Parent=Os02t0220500-01
Chr02	irgsp1_rep	CDS	6718202	6718351	.	+	0	Parent=Os02t0220500-01
Chr02	irgsp1_rep	CDS	6718423	6718483	.	+	0	Parent=Os02t0220500-01
Chr02	irgsp1_rep	CDS	6718573	6718625	.	+	2	Parent=Os02t0220500-01
Chr02	irgsp1_rep	CDS	6718702	6718803	.	+	0	Parent=Os02t0220500-01
Chr02	irgsp1_rep	CDS	6718882	6719371	.	+	0	Parent=Os02t0220500-01
Chr02	irgsp1_rep	CDS	6719696	6720075	.	+	2	Parent=Os02t0220500-01
Chr02	irgsp1_rep	three_prime_UTR	6720076	6720422	.	+	.	Parent=Os02t0220500-01
Chr02	irgsp1_rep	mRNA	6721988	6724318	.	+	.	ID=Os02t0220600-01;Name=Os02t0220600-01;Locus_id=Os02g0220600;CGSNL Gene Symbol=EEF1BG;CGSNL Gene Name=ELONGATION FACTOR 1B GAMMA;Oryzabase Gene Symbol Synonym(s)=eEF1Bgamma%2C EF-1gamma%2C OsEF1G1%2C EF1G1;Oryzabase Gene Name Synonym(s)=gamma-subunit of translation elongation factor 1B%2C elongation factor 1B gamma%2C ELONGATION FACTOR 1 GAMMA 1;Note=Similar to Elongation factor 1-gamma.;Transcript_evidence=AK104946 (DDBJ%2C Best hit);ORF_evidence=B7SDI2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=001-108-F01;Oryzabase=8987;TENOR=Os02t0220600-01
Chr02	irgsp1_rep	five_prime_UTR	6721988	6722068	.	+	.	Parent=Os02t0220600-01
Chr02	irgsp1_rep	five_prime_UTR	6722187	6722231	.	+	.	Parent=Os02t0220600-01
Chr02	irgsp1_rep	CDS	6722232	6722240	.	+	0	Parent=Os02t0220600-01
Chr02	irgsp1_rep	CDS	6723262	6723411	.	+	0	Parent=Os02t0220600-01
Chr02	irgsp1_rep	CDS	6723482	6723542	.	+	0	Parent=Os02t0220600-01
Chr02	irgsp1_rep	CDS	6723632	6723684	.	+	2	Parent=Os02t0220600-01
Chr02	irgsp1_rep	CDS	6723833	6723934	.	+	0	Parent=Os02t0220600-01
Chr02	irgsp1_rep	CDS	6724011	6724318	.	+	0	Parent=Os02t0220600-01
Chr02	irgsp1_rep	mRNA	6721988	6726015	.	+	.	ID=Os02t0220600-02;Name=Os02t0220600-02;Locus_id=Os02g0220600;CGSNL Gene Symbol=EEF1BG;CGSNL Gene Name=ELONGATION FACTOR 1B GAMMA;Oryzabase Gene Symbol Synonym(s)=eEF1Bgamma%2C EF-1gamma%2C OsEF1G1%2C EF1G1;Oryzabase Gene Name Synonym(s)=gamma-subunit of translation elongation factor 1B%2C elongation factor 1B gamma%2C ELONGATION FACTOR 1 GAMMA 1;Note=Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma).;Transcript_evidence=AK061944 (DDBJ%2C Best hit);ORF_evidence=B7SDI2 (UniProt);GO=Biological Process: translational elongation (GO:0006414),Cellular Component: eukaryotic translation elongation factor 1 complex (GO:0005853),Molecular Function: translation elongation factor activity (GO:0003746),Molecular Function: protein binding (GO:0005515);InterPro=Translation elongation factor EF1B%2C gamma chain%2C conserved (IPR001662),Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=001-042-E02;Oryzabase=8987;Expression=AK061944;TENOR=Os02t0220600-02;KEGG=Os02t0220600-02
Chr02	irgsp1_rep	five_prime_UTR	6721988	6722068	.	+	.	Parent=Os02t0220600-02
Chr02	irgsp1_rep	five_prime_UTR	6722187	6722231	.	+	.	Parent=Os02t0220600-02
Chr02	irgsp1_rep	CDS	6722232	6722240	.	+	0	Parent=Os02t0220600-02
Chr02	irgsp1_rep	CDS	6723262	6723411	.	+	0	Parent=Os02t0220600-02
Chr02	irgsp1_rep	CDS	6723482	6723542	.	+	0	Parent=Os02t0220600-02
Chr02	irgsp1_rep	CDS	6723632	6723684	.	+	2	Parent=Os02t0220600-02
Chr02	irgsp1_rep	CDS	6723833	6723934	.	+	0	Parent=Os02t0220600-02
Chr02	irgsp1_rep	CDS	6724011	6724512	.	+	0	Parent=Os02t0220600-02
Chr02	irgsp1_rep	CDS	6725301	6725680	.	+	2	Parent=Os02t0220600-02
Chr02	irgsp1_rep	three_prime_UTR	6725681	6726015	.	+	.	Parent=Os02t0220600-02
Chr02	irgsp1_rep	mRNA	6726465	6733496	.	-	.	ID=Os02t0220700-01;Name=Os02t0220700-01;Locus_id=Os02g0220700;Note=Hypothetical conserved gene.;Transcript_evidence=AK243248 (DDBJ%2C Best hit);ORF_evidence=Q6YW44 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J100047K09;TENOR=Os02t0220700-01;KEGG=Os02t0220700-01
Chr02	irgsp1_rep	five_prime_UTR	6733264	6733496	.	-	.	Parent=Os02t0220700-01
Chr02	irgsp1_rep	CDS	6732379	6733263	.	-	0	Parent=Os02t0220700-01
Chr02	irgsp1_rep	CDS	6731824	6731927	.	-	0	Parent=Os02t0220700-01
Chr02	irgsp1_rep	CDS	6730892	6731736	.	-	1	Parent=Os02t0220700-01
Chr02	irgsp1_rep	CDS	6730080	6730120	.	-	2	Parent=Os02t0220700-01
Chr02	irgsp1_rep	CDS	6729640	6729708	.	-	0	Parent=Os02t0220700-01
Chr02	irgsp1_rep	CDS	6729434	6729534	.	-	0	Parent=Os02t0220700-01
Chr02	irgsp1_rep	CDS	6729232	6729310	.	-	1	Parent=Os02t0220700-01
Chr02	irgsp1_rep	CDS	6729049	6729147	.	-	0	Parent=Os02t0220700-01
Chr02	irgsp1_rep	CDS	6727982	6728070	.	-	0	Parent=Os02t0220700-01
Chr02	irgsp1_rep	CDS	6727424	6727473	.	-	1	Parent=Os02t0220700-01
Chr02	irgsp1_rep	CDS	6727306	6727331	.	-	2	Parent=Os02t0220700-01
Chr02	irgsp1_rep	three_prime_UTR	6727155	6727305	.	-	.	Parent=Os02t0220700-01
Chr02	irgsp1_rep	three_prime_UTR	6726465	6727051	.	-	.	Parent=Os02t0220700-01
Chr02	irgsp1_rep	mRNA	6732383	6733630	.	+	.	ID=Os02t0220800-01;Name=Os02t0220800-01;Locus_id=Os02g0220800;Note=Hypothetical protein.;Transcript_evidence=AK111379 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-182-B05;Expression=AK111379;TENOR=Os02t0220800-01;KEGG=Os02t0220800-01
Chr02	irgsp1_rep	five_prime_UTR	6732383	6732582	.	+	.	Parent=Os02t0220800-01
Chr02	irgsp1_rep	CDS	6732583	6733137	.	+	0	Parent=Os02t0220800-01
Chr02	irgsp1_rep	CDS	6733396	6733494	.	+	0	Parent=Os02t0220800-01
Chr02	irgsp1_rep	three_prime_UTR	6733495	6733630	.	+	.	Parent=Os02t0220800-01
Chr02	irgsp1_rep	mRNA	6744958	6749884	.	-	.	ID=Os02t0221100-00;Name=Os02t0221100-00;Locus_id=Os02g0221100;Oryzabase Gene Symbol Synonym(s)=OsbHLH029;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 029;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=AK361711 (DDBJ);ORF_evidence=NP_001172862.1 (RefSeq);InterPro=Helix-loop-helix DNA-binding (IPR011598);Oryzabase=15320;TENOR=Os02t0221100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	6749471	6749884	.	-	0	Parent=Os02t0221100-00
Chr02	irgsp1_rep	CDS	6748272	6749225	.	-	0	Parent=Os02t0221100-00
Chr02	irgsp1_rep	CDS	6747376	6747867	.	-	0	Parent=Os02t0221100-00
Chr02	irgsp1_rep	CDS	6744958	6745041	.	-	0	Parent=Os02t0221100-00
Chr02	irgsp1_rep	mRNA	6771313	6778380	.	+	.	ID=Os02t0221300-01;Name=Os02t0221300-01;Locus_id=Os02g0221300;Oryzabase Gene Symbol Synonym(s)=OsRH19%2C eIF4A-2;Oryzabase Gene Name Synonym(s)=RNA helicase 19;Note=Similar to cDNA clone:001-114-H08%2C full insert sequence.;Transcript_evidence=AK288098 (DDBJ%2C Best hit);ORF_evidence=B9F4B9 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=RNA helicase%2C ATP-dependent%2C DEAD-box%2C conserved site (IPR000629),Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=J075193E18;Oryzabase=19134;TENOR=Os02t0221300-01;KEGG=Os02t0221300-01
Chr02	irgsp1_rep	five_prime_UTR	6771313	6771528	.	+	.	Parent=Os02t0221300-01
Chr02	irgsp1_rep	five_prime_UTR	6774008	6774042	.	+	.	Parent=Os02t0221300-01
Chr02	irgsp1_rep	CDS	6774043	6775093	.	+	0	Parent=Os02t0221300-01
Chr02	irgsp1_rep	CDS	6775240	6775347	.	+	2	Parent=Os02t0221300-01
Chr02	irgsp1_rep	CDS	6775718	6776020	.	+	2	Parent=Os02t0221300-01
Chr02	irgsp1_rep	CDS	6776252	6776306	.	+	2	Parent=Os02t0221300-01
Chr02	irgsp1_rep	CDS	6776431	6776507	.	+	1	Parent=Os02t0221300-01
Chr02	irgsp1_rep	CDS	6776992	6777413	.	+	2	Parent=Os02t0221300-01
Chr02	irgsp1_rep	CDS	6777545	6778174	.	+	0	Parent=Os02t0221300-01
Chr02	irgsp1_rep	three_prime_UTR	6778175	6778380	.	+	.	Parent=Os02t0221300-01
Chr02	irgsp1_rep	mRNA	6770989	6779383	.	-	.	ID=Os02t0221400-01;Name=Os02t0221400-01;Locus_id=Os02g0221400;Note=Non-protein coding transcript.;Transcript_evidence=AK065896 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013048J12;TENOR=Os02t0221400-01
Chr02	irgsp1_rep	exon	6778996	6779383	.	-	.	Parent=Os02t0221400-01
Chr02	irgsp1_rep	exon	6770989	6771567	.	-	.	Parent=Os02t0221400-01
Chr02	irgsp1_rep	mRNA	6784206	6788332	.	-	.	ID=Os02t0221500-01;Name=Os02t0221500-01;Locus_id=Os02g0221500;Oryzabase Gene Symbol Synonym(s)=RBPI%2C RBP-I;Oryzabase Gene Name Synonym(s)=RNA binding protein I;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK100904 (DDBJ%2C Best hit);ORF_evidence=B6TGB9 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023132A08;Oryzabase=20898;Expression=AK100904;TENOR=Os02t0221500-01;KEGG=Os02t0221500-01
Chr02	irgsp1_rep	five_prime_UTR	6788176	6788332	.	-	.	Parent=Os02t0221500-01
Chr02	irgsp1_rep	five_prime_UTR	6788030	6788088	.	-	.	Parent=Os02t0221500-01
Chr02	irgsp1_rep	CDS	6787833	6788029	.	-	0	Parent=Os02t0221500-01
Chr02	irgsp1_rep	CDS	6787681	6787721	.	-	1	Parent=Os02t0221500-01
Chr02	irgsp1_rep	CDS	6786191	6786354	.	-	2	Parent=Os02t0221500-01
Chr02	irgsp1_rep	CDS	6785962	6786064	.	-	0	Parent=Os02t0221500-01
Chr02	irgsp1_rep	CDS	6785715	6785884	.	-	2	Parent=Os02t0221500-01
Chr02	irgsp1_rep	CDS	6784721	6785239	.	-	0	Parent=Os02t0221500-01
Chr02	irgsp1_rep	three_prime_UTR	6784206	6784720	.	-	.	Parent=Os02t0221500-01
Chr02	irgsp1_rep	mRNA	6791027	6795032	.	+	.	ID=Os02t0221600-00;Name=Os02t0221600-00;Locus_id=Os02g0221600;Note=Similar to predicted protein.;Transcript_evidence=CT835428 (DDBJ%2C Best hit);ORF_evidence=NP_001130069.1 (RefSeq);TENOR=Os02t0221600-00;KEGG=Os02t0221600-00
Chr02	irgsp1_rep	five_prime_UTR	6791027	6791100	.	+	.	Parent=Os02t0221600-00
Chr02	irgsp1_rep	five_prime_UTR	6791111	6791159	.	+	.	Parent=Os02t0221600-00
Chr02	irgsp1_rep	five_prime_UTR	6791167	6791170	.	+	.	Parent=Os02t0221600-00
Chr02	irgsp1_rep	CDS	6791171	6791266	.	+	0	Parent=Os02t0221600-00
Chr02	irgsp1_rep	CDS	6791393	6791488	.	+	0	Parent=Os02t0221600-00
Chr02	irgsp1_rep	CDS	6792694	6792778	.	+	0	Parent=Os02t0221600-00
Chr02	irgsp1_rep	CDS	6793163	6793284	.	+	2	Parent=Os02t0221600-00
Chr02	irgsp1_rep	CDS	6793391	6793415	.	+	0	Parent=Os02t0221600-00
Chr02	irgsp1_rep	CDS	6793490	6793573	.	+	2	Parent=Os02t0221600-00
Chr02	irgsp1_rep	CDS	6793695	6793724	.	+	2	Parent=Os02t0221600-00
Chr02	irgsp1_rep	CDS	6793818	6793923	.	+	2	Parent=Os02t0221600-00
Chr02	irgsp1_rep	CDS	6794023	6794086	.	+	1	Parent=Os02t0221600-00
Chr02	irgsp1_rep	three_prime_UTR	6794087	6794087	.	+	.	Parent=Os02t0221600-00
Chr02	irgsp1_rep	three_prime_UTR	6794716	6795032	.	+	.	Parent=Os02t0221600-00
Chr02	irgsp1_rep	mRNA	6798568	6802478	.	+	.	ID=Os02t0221800-00;Name=Os02t0221800-00;Locus_id=Os02g0221800;Note=Similar to predicted protein.;Transcript_evidence=AK369639 (DDBJ);ORF_evidence=NP_568202.1 (RefSeq);GO=Biological Process: signal transduction (GO:0007165),Cellular Component: proteinaceous extracellular matrix (GO:0005578),Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249),SPARC/Testican%2C calcium-binding domain (IPR019577);TENOR=Os02t0221800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	6798568	6799333	.	+	0	Parent=Os02t0221800-00
Chr02	irgsp1_rep	CDS	6800312	6800414	.	+	2	Parent=Os02t0221800-00
Chr02	irgsp1_rep	CDS	6800499	6800564	.	+	1	Parent=Os02t0221800-00
Chr02	irgsp1_rep	CDS	6801206	6801370	.	+	1	Parent=Os02t0221800-00
Chr02	irgsp1_rep	CDS	6801461	6801557	.	+	1	Parent=Os02t0221800-00
Chr02	irgsp1_rep	CDS	6801815	6801931	.	+	0	Parent=Os02t0221800-00
Chr02	irgsp1_rep	three_prime_UTR	6801932	6801941	.	+	.	Parent=Os02t0221800-00
Chr02	irgsp1_rep	three_prime_UTR	6802033	6802144	.	+	.	Parent=Os02t0221800-00
Chr02	irgsp1_rep	three_prime_UTR	6802240	6802478	.	+	.	Parent=Os02t0221800-00
Chr02	irgsp1_rep	mRNA	6802726	6805314	.	-	.	ID=Os02t0221900-01;Name=Os02t0221900-01;Locus_id=Os02g0221900;RAP-DB Gene Symbol Synonym(s)=Os1900%2C CYP711A5;Oryzabase Gene Symbol Synonym(s)=OsMAX1D%2C MAX1D%2C Os1900/CYP711A5%2C Os1900%2C CYP711A5%2C OsCYP711A5;Oryzabase Gene Name Synonym(s)=MORE AXILLARY GROWTH 1D%2C CytoChrome P450 711A5;Note=CytoChrome P450 family member%2C  Homolog of Arabidopsis MORE AXILLARY GROWTH 1 (MAX1);Transcript_evidence=AK122138;ORF_evidence=Q0E2P9;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 superfamily (IPR036396),CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J033136E09;Manual Curation=March 20%2C 2018;Literature_PMID=29479714,23424248;Oryzabase=19609;Expression=AK122138;TENOR=Os02t0221900-01;KEGG=Os02t0221900-01
Chr02	irgsp1_rep	five_prime_UTR	6805265	6805314	.	-	.	Parent=Os02t0221900-01
Chr02	irgsp1_rep	CDS	6804999	6805264	.	-	0	Parent=Os02t0221900-01
Chr02	irgsp1_rep	CDS	6804739	6804888	.	-	1	Parent=Os02t0221900-01
Chr02	irgsp1_rep	CDS	6803656	6804550	.	-	1	Parent=Os02t0221900-01
Chr02	irgsp1_rep	CDS	6802917	6803252	.	-	0	Parent=Os02t0221900-01
Chr02	irgsp1_rep	three_prime_UTR	6802726	6802916	.	-	.	Parent=Os02t0221900-01
Chr02	irgsp1_rep	mRNA	6802706	6804635	.	-	.	ID=Os02t0221900-02;Name=Os02t0221900-02;Locus_id=Os02g0221900;Oryzabase Gene Symbol Synonym(s)=OsMAX1D%2C MAX1D%2C Os1900/CYP711A5%2C Os1900%2C CYP711A5%2C OsCYP711A5;Oryzabase Gene Name Synonym(s)=MORE AXILLARY GROWTH 1D%2C CytoChrome P450 711A5;Note=Similar to CytoChrome P450 monooxygenase.;Transcript_evidence=AK122077 (DDBJ%2C Best hit);ORF_evidence=Q6YVG7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J033119E05;Oryzabase=19609;TENOR=Os02t0221900-02
Chr02	irgsp1_rep	five_prime_UTR	6804592	6804635	.	-	.	Parent=Os02t0221900-02
Chr02	irgsp1_rep	CDS	6803656	6804591	.	-	0	Parent=Os02t0221900-02
Chr02	irgsp1_rep	CDS	6802917	6803252	.	-	0	Parent=Os02t0221900-02
Chr02	irgsp1_rep	three_prime_UTR	6802706	6802916	.	-	.	Parent=Os02t0221900-02
Chr02	irgsp1_rep	mRNA	6802726	6804607	.	-	.	ID=Os02t0221900-03;Name=Os02t0221900-03;Locus_id=Os02g0221900;Oryzabase Gene Symbol Synonym(s)=OsMAX1D%2C MAX1D%2C Os1900/CYP711A5%2C Os1900%2C CYP711A5%2C OsCYP711A5;Oryzabase Gene Name Synonym(s)=MORE AXILLARY GROWTH 1D%2C CytoChrome P450 711A5;Note=Similar to CytoChrome P450 monooxygenase.;Transcript_evidence=AK064029 (DDBJ%2C Best hit);ORF_evidence=Q6YVG7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=001-125-B04;Oryzabase=19609;TENOR=Os02t0221900-03
Chr02	irgsp1_rep	five_prime_UTR	6804592	6804607	.	-	.	Parent=Os02t0221900-03
Chr02	irgsp1_rep	CDS	6803656	6804591	.	-	0	Parent=Os02t0221900-03
Chr02	irgsp1_rep	CDS	6802917	6803252	.	-	0	Parent=Os02t0221900-03
Chr02	irgsp1_rep	three_prime_UTR	6802726	6802916	.	-	.	Parent=Os02t0221900-03
Chr02	irgsp1_rep	mRNA	6802928	6805159	.	+	.	ID=Os02t0222000-00;Name=Os02t0222000-00;Locus_id=Os02g0222000;Note=Hypothetical protein.;Transcript_evidence=tplb0051d09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0222000-00
Chr02	irgsp1_rep	five_prime_UTR	6802928	6802955	.	+	.	Parent=Os02t0222000-00
Chr02	irgsp1_rep	CDS	6802956	6803251	.	+	0	Parent=Os02t0222000-00
Chr02	irgsp1_rep	CDS	6803655	6804546	.	+	1	Parent=Os02t0222000-00
Chr02	irgsp1_rep	CDS	6804734	6804745	.	+	0	Parent=Os02t0222000-00
Chr02	irgsp1_rep	three_prime_UTR	6804746	6804881	.	+	.	Parent=Os02t0222000-00
Chr02	irgsp1_rep	three_prime_UTR	6804990	6805159	.	+	.	Parent=Os02t0222000-00
Chr02	irgsp1_rep	mRNA	6810648	6814078	.	+	.	ID=Os02t0222100-01;Name=Os02t0222100-01;Locus_id=Os02g0222100;Note=Similar to Cysteine synthase (EC 4.2.99.8).;Transcript_evidence=AK110984 (DDBJ%2C Best hit);ORF_evidence=Q9XEA7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent enzyme%2C beta subunit (IPR001926);NIAS_FLcDNA=002-174-C12;Expression=AK110984;TENOR=Os02t0222100-01;KEGG=Os02t0222100-01 (EC:4.2.1.22%2C EC:4.2.99.8)
Chr02	irgsp1_rep	five_prime_UTR	6810648	6811726	.	+	.	Parent=Os02t0222100-01
Chr02	irgsp1_rep	CDS	6811727	6811813	.	+	0	Parent=Os02t0222100-01
Chr02	irgsp1_rep	CDS	6811905	6812032	.	+	0	Parent=Os02t0222100-01
Chr02	irgsp1_rep	CDS	6812462	6812574	.	+	1	Parent=Os02t0222100-01
Chr02	irgsp1_rep	CDS	6812700	6812710	.	+	2	Parent=Os02t0222100-01
Chr02	irgsp1_rep	three_prime_UTR	6812711	6812857	.	+	.	Parent=Os02t0222100-01
Chr02	irgsp1_rep	three_prime_UTR	6813248	6813406	.	+	.	Parent=Os02t0222100-01
Chr02	irgsp1_rep	three_prime_UTR	6813510	6813701	.	+	.	Parent=Os02t0222100-01
Chr02	irgsp1_rep	three_prime_UTR	6813806	6814078	.	+	.	Parent=Os02t0222100-01
Chr02	irgsp1_rep	mRNA	6831023	6835681	.	-	.	ID=Os02t0222500-01;Name=Os02t0222500-01;Locus_id=Os02g0222500;Note=Hypothetical protein.;Transcript_evidence=AK101952 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033075I20;TENOR=Os02t0222500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	6835680	6835681	.	-	.	Parent=Os02t0222500-01
Chr02	irgsp1_rep	CDS	6835491	6835679	.	-	0	Parent=Os02t0222500-01
Chr02	irgsp1_rep	CDS	6834497	6834730	.	-	0	Parent=Os02t0222500-01
Chr02	irgsp1_rep	three_prime_UTR	6831023	6834496	.	-	.	Parent=Os02t0222500-01
Chr02	irgsp1_rep	mRNA	6902084	6903490	.	-	.	ID=Os02t0223200-01;Name=Os02t0223200-01;Locus_id=Os02g0223200;Note=Conserved hypothetical protein.;Transcript_evidence=AK100220 (DDBJ%2C Best hit);ORF_evidence=Q6YVF6 (UniProt);NIAS_FLcDNA=J023046M01;TENOR=Os02t0223200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	6903238	6903490	.	-	.	Parent=Os02t0223200-01
Chr02	irgsp1_rep	CDS	6902599	6903237	.	-	0	Parent=Os02t0223200-01
Chr02	irgsp1_rep	three_prime_UTR	6902084	6902598	.	-	.	Parent=Os02t0223200-01
Chr02	irgsp1_rep	mRNA	6902424	6903803	.	+	.	ID=Os02t0223300-01;Name=Os02t0223300-01;Locus_id=Os02g0223300;Note=Poly(A) polymerase%2C central domain domain containing protein.;Transcript_evidence=AK068568 (DDBJ%2C Best hit);ORF_evidence=Q6K3Q7 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: polynucleotide adenylyltransferase activity (GO:0004652);InterPro=Poly(A) polymerase%2C central domain (IPR007012);NIAS_FLcDNA=J013152N14;TENOR=Os02t0223300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	6902424	6902515	.	+	.	Parent=Os02t0223300-01
Chr02	irgsp1_rep	CDS	6902516	6903181	.	+	0	Parent=Os02t0223300-01
Chr02	irgsp1_rep	three_prime_UTR	6903182	6903803	.	+	.	Parent=Os02t0223300-01
Chr02	irgsp1_rep	mRNA	6915418	6916621	.	+	.	ID=Os02t0223700-01;Name=Os02t0223700-01;Locus_id=Os02g0223700;Note=Protein of unknown function DUF3511 domain containing protein.;Transcript_evidence=AK243356 (DDBJ%2C Best hit);ORF_evidence=NP_001046331.1 (RefSeq);InterPro=Protein of unknown function DUF3511 (IPR021899);NIAS_FLcDNA=J100061D19;Oryzabase=22903;TENOR=Os02t0223700-01;KEGG=Os02t0223700-01
Chr02	irgsp1_rep	five_prime_UTR	6915418	6915461	.	+	.	Parent=Os02t0223700-01
Chr02	irgsp1_rep	CDS	6915462	6916160	.	+	0	Parent=Os02t0223700-01
Chr02	irgsp1_rep	three_prime_UTR	6916161	6916621	.	+	.	Parent=Os02t0223700-01
Chr02	irgsp1_rep	mRNA	6925977	6927916	.	-	.	ID=Os02t0223850-01;Name=Os02t0223850-01;Locus_id=Os02g0223850;Note=Similar to ESTs AU075609(C63344).;Transcript_evidence=AK289115 (DDBJ%2C Best hit);ORF_evidence=Q9SNJ2 (UniProt);NIAS_FLcDNA=J090097G23;TENOR=Os02t0223850-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	6927270	6927916	.	-	.	Parent=Os02t0223850-01
Chr02	irgsp1_rep	CDS	6927156	6927269	.	-	0	Parent=Os02t0223850-01
Chr02	irgsp1_rep	three_prime_UTR	6925977	6927155	.	-	.	Parent=Os02t0223850-01
Chr02	irgsp1_rep	mRNA	6956599	6959791	.	+	.	ID=Os02t0224100-01;Name=Os02t0224100-01;Locus_id=Os02g0224100;Oryzabase Gene Symbol Synonym(s)=OsPP2C12%2C PP2C12%2C OsPP21;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C12%2C protein phosphatase 2C 12%2C protein phosphatase 21;Note=Protein phosphatase 2C domain containing protein.;Transcript_evidence=AK067205 (DDBJ%2C Best hit);ORF_evidence=NP_001151594.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J013095D23;Oryzabase=17889;Expression=AK067205;TENOR=Os02t0224100-01;KEGG=Os02t0224100-01
Chr02	irgsp1_rep	five_prime_UTR	6956599	6956823	.	+	.	Parent=Os02t0224100-01
Chr02	irgsp1_rep	CDS	6956824	6957012	.	+	0	Parent=Os02t0224100-01
Chr02	irgsp1_rep	CDS	6958361	6959341	.	+	0	Parent=Os02t0224100-01
Chr02	irgsp1_rep	three_prime_UTR	6959342	6959791	.	+	.	Parent=Os02t0224100-01
Chr02	irgsp1_rep	mRNA	6957550	6959803	.	+	.	ID=Os02t0224100-02;Name=Os02t0224100-02;Locus_id=Os02g0224100;Oryzabase Gene Symbol Synonym(s)=OsPP2C12%2C PP2C12%2C OsPP21;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C12%2C protein phosphatase 2C 12%2C protein phosphatase 21;Note=Similar to catalytic/ protein phosphatase type 2C.;Transcript_evidence=AK068836 (DDBJ%2C Best hit);ORF_evidence=NP_001151594.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J013159P20;Oryzabase=17889;Expression=AK068836;TENOR=Os02t0224100-02;KEGG=Os02t0224100-02 (EC:3.1.3.16)
Chr02	irgsp1_rep	five_prime_UTR	6957550	6958222	.	+	.	Parent=Os02t0224100-02
Chr02	irgsp1_rep	CDS	6958223	6959341	.	+	0	Parent=Os02t0224100-02
Chr02	irgsp1_rep	three_prime_UTR	6959342	6959803	.	+	.	Parent=Os02t0224100-02
Chr02	irgsp1_rep	mRNA	6964064	6971934	.	-	.	ID=Os02t0224200-01;Name=Os02t0224200-01;Locus_id=Os02g0224200;Note=Similar to Ser/Thr specific protein phosphatase 2A B regulatory subunit beta isoform.;Transcript_evidence=AK101100 (DDBJ%2C Best hit);ORF_evidence=A2X2K3 (UniProt);GO=Biological Process: signal transduction (GO:0007165),Cellular Component: protein phosphatase type 2A complex (GO:0000159),Molecular Function: protein binding (GO:0005515),Molecular Function: protein phosphatase type 2A regulator activity (GO:0008601);InterPro=Protein phosphatase 2A%2C regulatory subunit PR55 (IPR000009),WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),Protein phosphatase 2A%2C regulatory subunit PR55%2C conserved site (IPR018067),WD40 repeat%2C subgroup (IPR019781);NIAS_FLcDNA=J033025A11;Expression=AK101100;TENOR=Os02t0224200-01;KEGG=Os02t0224200-01
Chr02	irgsp1_rep	five_prime_UTR	6971762	6971934	.	-	.	Parent=Os02t0224200-01
Chr02	irgsp1_rep	CDS	6971614	6971761	.	-	0	Parent=Os02t0224200-01
Chr02	irgsp1_rep	CDS	6969762	6969865	.	-	2	Parent=Os02t0224200-01
Chr02	irgsp1_rep	CDS	6969587	6969682	.	-	0	Parent=Os02t0224200-01
Chr02	irgsp1_rep	CDS	6968723	6968842	.	-	0	Parent=Os02t0224200-01
Chr02	irgsp1_rep	CDS	6968148	6968354	.	-	0	Parent=Os02t0224200-01
Chr02	irgsp1_rep	CDS	6967865	6967956	.	-	0	Parent=Os02t0224200-01
Chr02	irgsp1_rep	CDS	6967468	6967586	.	-	1	Parent=Os02t0224200-01
Chr02	irgsp1_rep	CDS	6966540	6966663	.	-	2	Parent=Os02t0224200-01
Chr02	irgsp1_rep	CDS	6966260	6966383	.	-	1	Parent=Os02t0224200-01
Chr02	irgsp1_rep	CDS	6965635	6965703	.	-	0	Parent=Os02t0224200-01
Chr02	irgsp1_rep	CDS	6965456	6965547	.	-	0	Parent=Os02t0224200-01
Chr02	irgsp1_rep	CDS	6965279	6965356	.	-	1	Parent=Os02t0224200-01
Chr02	irgsp1_rep	CDS	6964822	6964889	.	-	1	Parent=Os02t0224200-01
Chr02	irgsp1_rep	CDS	6964548	6964684	.	-	2	Parent=Os02t0224200-01
Chr02	irgsp1_rep	three_prime_UTR	6964064	6964547	.	-	.	Parent=Os02t0224200-01
Chr02	irgsp1_rep	mRNA	6983500	6984891	.	+	.	ID=Os02t0224300-01;Name=Os02t0224300-01;Locus_id=Os02g0224300;Note=HMW glutenin family protein.;Transcript_evidence=AK099890 (DDBJ%2C Best hit);ORF_evidence=B9F4C9 (UniProt);NIAS_FLcDNA=J013112P20;Expression=AK099890;TENOR=Os02t0224300-01;KEGG=Os02t0224300-01
Chr02	irgsp1_rep	five_prime_UTR	6983500	6983506	.	+	.	Parent=Os02t0224300-01
Chr02	irgsp1_rep	CDS	6983507	6984772	.	+	0	Parent=Os02t0224300-01
Chr02	irgsp1_rep	three_prime_UTR	6984773	6984891	.	+	.	Parent=Os02t0224300-01
Chr02	irgsp1_rep	mRNA	6984179	6984867	.	+	.	ID=Os02t0224300-02;Name=Os02t0224300-02;Locus_id=Os02g0224300;Note=Hypothetical conserved gene.;Transcript_evidence=AK119200 (DDBJ%2C Best hit);ORF_evidence=B9F4C9 (UniProt);NIAS_FLcDNA=001-041-D03;Expression=AK119200;TENOR=Os02t0224300-02;KEGG=Os02t0224300-02
Chr02	irgsp1_rep	CDS	6984179	6984772	.	+	0	Parent=Os02t0224300-02
Chr02	irgsp1_rep	three_prime_UTR	6984773	6984867	.	+	.	Parent=Os02t0224300-02
Chr02	irgsp1_rep	mRNA	6985342	6993456	.	+	.	ID=Os02t0224400-01;Name=Os02t0224400-01;Locus_id=Os02g0224400;Note=Similar to Xaa-Pro dipeptidase (EC 3.4.13.9) (X-Pro dipeptidase) (Proline dipeptidase) (Prolidase) (Imidodipeptidase).;Transcript_evidence=AK064268 (DDBJ%2C Best hit);ORF_evidence=B6TL64 (UniProt);GO=Biological Process: cellular process (GO:0009987),Molecular Function: aminopeptidase activity (GO:0004177),Molecular Function: manganese ion binding (GO:0030145);InterPro=Peptidase M24%2C structural domain (IPR000994),Peptidase M24B%2C X-Pro dipeptidase/aminopeptidase P N-terminal (IPR007865);NIAS_FLcDNA=002-105-E02;Expression=AK064268;TENOR=Os02t0224400-01;KEGG=Os02t0224400-01 (EC:3.4.13.9)
Chr02	irgsp1_rep	five_prime_UTR	6985342	6985381	.	+	.	Parent=Os02t0224400-01
Chr02	irgsp1_rep	CDS	6985382	6985543	.	+	0	Parent=Os02t0224400-01
Chr02	irgsp1_rep	CDS	6985648	6985697	.	+	0	Parent=Os02t0224400-01
Chr02	irgsp1_rep	CDS	6985836	6985896	.	+	1	Parent=Os02t0224400-01
Chr02	irgsp1_rep	CDS	6986474	6986569	.	+	0	Parent=Os02t0224400-01
Chr02	irgsp1_rep	CDS	6986654	6986803	.	+	0	Parent=Os02t0224400-01
Chr02	irgsp1_rep	CDS	6987108	6987239	.	+	0	Parent=Os02t0224400-01
Chr02	irgsp1_rep	CDS	6987541	6987668	.	+	0	Parent=Os02t0224400-01
Chr02	irgsp1_rep	CDS	6988185	6988227	.	+	1	Parent=Os02t0224400-01
Chr02	irgsp1_rep	CDS	6988835	6988918	.	+	0	Parent=Os02t0224400-01
Chr02	irgsp1_rep	CDS	6989949	6989990	.	+	0	Parent=Os02t0224400-01
Chr02	irgsp1_rep	CDS	6990164	6990234	.	+	0	Parent=Os02t0224400-01
Chr02	irgsp1_rep	CDS	6990521	6990574	.	+	1	Parent=Os02t0224400-01
Chr02	irgsp1_rep	CDS	6990689	6990794	.	+	1	Parent=Os02t0224400-01
Chr02	irgsp1_rep	CDS	6990938	6991006	.	+	0	Parent=Os02t0224400-01
Chr02	irgsp1_rep	CDS	6991724	6991867	.	+	0	Parent=Os02t0224400-01
Chr02	irgsp1_rep	CDS	6992938	6993066	.	+	0	Parent=Os02t0224400-01
Chr02	irgsp1_rep	three_prime_UTR	6993067	6993456	.	+	.	Parent=Os02t0224400-01
Chr02	irgsp1_rep	mRNA	7006163	7010507	.	+	.	ID=Os02t0224800-01;Name=Os02t0224800-01;Locus_id=Os02g0224800;Note=Ndr family protein.;Transcript_evidence=AK066213 (DDBJ%2C Best hit);ORF_evidence=B6TFK0 (UniProt);InterPro=Ndr (IPR004142),Pollen specific protein SF21 (IPR015511);NIAS_FLcDNA=J013056E08;Expression=AK066213;TENOR=Os02t0224800-01;KEGG=Os02t0224800-01
Chr02	irgsp1_rep	five_prime_UTR	7006163	7006255	.	+	.	Parent=Os02t0224800-01
Chr02	irgsp1_rep	CDS	7006256	7006318	.	+	0	Parent=Os02t0224800-01
Chr02	irgsp1_rep	CDS	7008433	7008532	.	+	0	Parent=Os02t0224800-01
Chr02	irgsp1_rep	CDS	7008613	7008710	.	+	2	Parent=Os02t0224800-01
Chr02	irgsp1_rep	CDS	7008833	7008921	.	+	0	Parent=Os02t0224800-01
Chr02	irgsp1_rep	CDS	7009011	7009071	.	+	1	Parent=Os02t0224800-01
Chr02	irgsp1_rep	CDS	7009153	7009239	.	+	0	Parent=Os02t0224800-01
Chr02	irgsp1_rep	CDS	7009309	7009386	.	+	0	Parent=Os02t0224800-01
Chr02	irgsp1_rep	CDS	7009483	7009539	.	+	0	Parent=Os02t0224800-01
Chr02	irgsp1_rep	CDS	7009631	7009686	.	+	0	Parent=Os02t0224800-01
Chr02	irgsp1_rep	CDS	7009777	7009912	.	+	1	Parent=Os02t0224800-01
Chr02	irgsp1_rep	CDS	7010003	7010224	.	+	0	Parent=Os02t0224800-01
Chr02	irgsp1_rep	three_prime_UTR	7010225	7010507	.	+	.	Parent=Os02t0224800-01
Chr02	irgsp1_rep	mRNA	7010001	7010488	.	+	.	ID=Os02t0224800-02;Name=Os02t0224800-02;Locus_id=Os02g0224800;Note=Similar to predicted protein.;Transcript_evidence=AK062204 (DDBJ%2C Best hit);ORF_evidence=B6TFK0 (UniProt);InterPro=Ndr (IPR004142),Pollen specific protein SF21 (IPR015511);NIAS_FLcDNA=001-046-G12;Expression=AK062204;TENOR=Os02t0224800-02;KEGG=Os02t0224800-02
Chr02	irgsp1_rep	five_prime_UTR	7010001	7010002	.	+	.	Parent=Os02t0224800-02
Chr02	irgsp1_rep	CDS	7010003	7010224	.	+	0	Parent=Os02t0224800-02
Chr02	irgsp1_rep	three_prime_UTR	7010225	7010488	.	+	.	Parent=Os02t0224800-02
Chr02	irgsp1_rep	mRNA	7006167	7010202	.	-	.	ID=Os02t0224850-00;Name=Os02t0224850-00;Locus_id=Os02g0224850;Note=Non-protein coding transcript.;Transcript_evidence=tplb0040g21 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os02t0224850-00
Chr02	irgsp1_rep	exon	7010029	7010202	.	-	.	Parent=Os02t0224850-00
Chr02	irgsp1_rep	exon	7009768	7009938	.	-	.	Parent=Os02t0224850-00
Chr02	irgsp1_rep	exon	7009428	7009575	.	-	.	Parent=Os02t0224850-00
Chr02	irgsp1_rep	exon	7009122	7009258	.	-	.	Parent=Os02t0224850-00
Chr02	irgsp1_rep	exon	7008831	7008948	.	-	.	Parent=Os02t0224850-00
Chr02	irgsp1_rep	exon	7008601	7008708	.	-	.	Parent=Os02t0224850-00
Chr02	irgsp1_rep	exon	7008450	7008523	.	-	.	Parent=Os02t0224850-00
Chr02	irgsp1_rep	exon	7006167	7006331	.	-	.	Parent=Os02t0224850-00
Chr02	irgsp1_rep	mRNA	7012512	7017442	.	-	.	ID=Os02t0224900-01;Name=Os02t0224900-01;Locus_id=Os02g0224900;Note=Similar to ATPP2-A13.;Transcript_evidence=AK101829 (DDBJ%2C Best hit);ORF_evidence=NP_001149956.1 (RefSeq);NIAS_FLcDNA=J033068G21;Expression=AK101829;TENOR=Os02t0224900-01;KEGG=Os02t0224900-01
Chr02	irgsp1_rep	five_prime_UTR	7017331	7017442	.	-	.	Parent=Os02t0224900-01
Chr02	irgsp1_rep	CDS	7017016	7017330	.	-	0	Parent=Os02t0224900-01
Chr02	irgsp1_rep	CDS	7014183	7014250	.	-	0	Parent=Os02t0224900-01
Chr02	irgsp1_rep	CDS	7012780	7013110	.	-	1	Parent=Os02t0224900-01
Chr02	irgsp1_rep	three_prime_UTR	7012512	7012779	.	-	.	Parent=Os02t0224900-01
Chr02	irgsp1_rep	mRNA	7018719	7024190	.	+	.	ID=Os02t0225000-01;Name=Os02t0225000-01;Locus_id=Os02g0225000;Note=Similar to cDNA clone:001-044-E12%2C full insert sequence.;Transcript_evidence=AK241075 (DDBJ%2C Best hit);ORF_evidence=B7EBN1 (UniProt);InterPro=Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J065069G03;TENOR=Os02t0225000-01;KEGG=Os02t0225000-01
Chr02	irgsp1_rep	five_prime_UTR	7018719	7018840	.	+	.	Parent=Os02t0225000-01
Chr02	irgsp1_rep	five_prime_UTR	7019139	7019146	.	+	.	Parent=Os02t0225000-01
Chr02	irgsp1_rep	CDS	7019147	7019227	.	+	0	Parent=Os02t0225000-01
Chr02	irgsp1_rep	CDS	7019616	7019711	.	+	0	Parent=Os02t0225000-01
Chr02	irgsp1_rep	CDS	7019795	7019869	.	+	0	Parent=Os02t0225000-01
Chr02	irgsp1_rep	CDS	7020021	7020151	.	+	0	Parent=Os02t0225000-01
Chr02	irgsp1_rep	CDS	7021023	7021077	.	+	1	Parent=Os02t0225000-01
Chr02	irgsp1_rep	CDS	7021545	7021700	.	+	0	Parent=Os02t0225000-01
Chr02	irgsp1_rep	CDS	7022138	7022206	.	+	0	Parent=Os02t0225000-01
Chr02	irgsp1_rep	CDS	7022292	7022399	.	+	0	Parent=Os02t0225000-01
Chr02	irgsp1_rep	CDS	7023028	7023096	.	+	0	Parent=Os02t0225000-01
Chr02	irgsp1_rep	CDS	7023643	7023697	.	+	0	Parent=Os02t0225000-01
Chr02	irgsp1_rep	CDS	7023931	7024127	.	+	2	Parent=Os02t0225000-01
Chr02	irgsp1_rep	three_prime_UTR	7024128	7024190	.	+	.	Parent=Os02t0225000-01
Chr02	irgsp1_rep	mRNA	7024790	7025386	.	+	.	ID=Os02t0225100-00;Name=Os02t0225100-00;Locus_id=Os02g0225100;Oryzabase Gene Symbol Synonym(s)=OSK3;Oryzabase Gene Name Synonym(s)=S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 3%2C Oryza sativa SKP1-like gene 3;Note=SKP1 component domain containing protein.;Transcript_evidence=FP094482 (DDBJ);ORF_evidence=Q6Z8A9 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);InterPro=SKP1 component (IPR001232),BTB/POZ fold (IPR011333),SKP1 component%2C dimerisation (IPR016072),E3 ubiquitin ligase%2C SCF complex%2C Skp subunit (IPR016897);Oryzabase=18284;TENOR=Os02t0225100-00
Chr02	irgsp1_rep	CDS	7024790	7025386	.	+	0	Parent=Os02t0225100-00
Chr02	irgsp1_rep	mRNA	7032348	7034864	.	-	.	ID=Os02t0225300-01;Name=Os02t0225300-01;Locus_id=Os02g0225300;Note=Conserved hypothetical protein.;Transcript_evidence=AK064695 (DDBJ%2C Best hit);ORF_evidence=A2X2L0 (UniProt);NIAS_FLcDNA=002-116-F08;TENOR=Os02t0225300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	7034650	7034864	.	-	.	Parent=Os02t0225300-01
Chr02	irgsp1_rep	CDS	7034482	7034649	.	-	0	Parent=Os02t0225300-01
Chr02	irgsp1_rep	CDS	7034404	7034450	.	-	0	Parent=Os02t0225300-01
Chr02	irgsp1_rep	CDS	7034309	7034321	.	-	1	Parent=Os02t0225300-01
Chr02	irgsp1_rep	three_prime_UTR	7034177	7034308	.	-	.	Parent=Os02t0225300-01
Chr02	irgsp1_rep	three_prime_UTR	7033087	7033172	.	-	.	Parent=Os02t0225300-01
Chr02	irgsp1_rep	three_prime_UTR	7032348	7032761	.	-	.	Parent=Os02t0225300-01
Chr02	irgsp1_rep	mRNA	7062837	7064444	.	+	.	ID=Os02t0225900-00;Name=Os02t0225900-00;Locus_id=Os02g0225900;Note=Conserved hypothetical protein.;Transcript_evidence=CT835397 (DDBJ%2C Best hit);ORF_evidence=NP_001046342.1 (RefSeq);TENOR=Os02t0225900-00;KEGG=Os02t0225900-00
Chr02	irgsp1_rep	five_prime_UTR	7062837	7062962	.	+	.	Parent=Os02t0225900-00
Chr02	irgsp1_rep	CDS	7062963	7064270	.	+	0	Parent=Os02t0225900-00
Chr02	irgsp1_rep	three_prime_UTR	7064271	7064444	.	+	.	Parent=Os02t0225900-00
Chr02	irgsp1_rep	mRNA	7066391	7069494	.	-	.	ID=Os02t0226000-01;Name=Os02t0226000-01;Locus_id=Os02g0226000;Note=Similar to Peroxisomal membrane protein PMP22 (22 kDa peroxisomal membrane protein).;Transcript_evidence=AK121976 (DDBJ%2C Best hit);ORF_evidence=B6TFH7 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Mpv17/PMP22 (IPR007248);NIAS_FLcDNA=J033108J17;Expression=AK121976;TENOR=Os02t0226000-01;KEGG=Os02t0226000-01
Chr02	irgsp1_rep	five_prime_UTR	7069240	7069494	.	-	.	Parent=Os02t0226000-01
Chr02	irgsp1_rep	CDS	7069108	7069239	.	-	0	Parent=Os02t0226000-01
Chr02	irgsp1_rep	CDS	7068925	7069023	.	-	0	Parent=Os02t0226000-01
Chr02	irgsp1_rep	CDS	7067877	7067978	.	-	0	Parent=Os02t0226000-01
Chr02	irgsp1_rep	CDS	7067463	7067538	.	-	0	Parent=Os02t0226000-01
Chr02	irgsp1_rep	CDS	7066980	7067050	.	-	2	Parent=Os02t0226000-01
Chr02	irgsp1_rep	CDS	7066807	7066892	.	-	0	Parent=Os02t0226000-01
Chr02	irgsp1_rep	CDS	7066662	7066713	.	-	1	Parent=Os02t0226000-01
Chr02	irgsp1_rep	three_prime_UTR	7066391	7066661	.	-	.	Parent=Os02t0226000-01
Chr02	irgsp1_rep	mRNA	7078703	7079848	.	+	.	ID=Os02t0226200-01;Name=Os02t0226200-01;Locus_id=Os02g0226200;Note=HAD-superfamily subfamily IB hydrolase%2C hypothetical 1 protein.;Transcript_evidence=AK289142 (DDBJ%2C Best hit);ORF_evidence=B6SJP8 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: phosphatase activity (GO:0016791);InterPro=HAD-superfamily hydrolase%2C subfamily IB%2C PSPase-like (IPR006383),Pyridoxal phosphate phosphatase-related (IPR006384),Phosphatase PHOSPHO-type (IPR016965),HAD-like domain (IPR023214);NIAS_FLcDNA=J090099H22;TENOR=Os02t0226200-01;KEGG=Os02t0226200-01
Chr02	irgsp1_rep	five_prime_UTR	7078703	7078754	.	+	.	Parent=Os02t0226200-01
Chr02	irgsp1_rep	CDS	7078755	7078910	.	+	0	Parent=Os02t0226200-01
Chr02	irgsp1_rep	CDS	7079000	7079734	.	+	0	Parent=Os02t0226200-01
Chr02	irgsp1_rep	three_prime_UTR	7079735	7079848	.	+	.	Parent=Os02t0226200-01
Chr02	irgsp1_rep	mRNA	7083362	7088382	.	+	.	ID=Os02t0226300-00;Name=Os02t0226300-00;Locus_id=Os02g0226300;Note=Mitochondrial carrier protein domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8AEI5 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial inner membrane (GO:0005743),Molecular Function: binding (GO:0005488);InterPro=Mitochondrial carrier protein (IPR002067),Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);TENOR=Os02t0226300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	7083362	7083527	.	+	0	Parent=Os02t0226300-00
Chr02	irgsp1_rep	CDS	7085345	7085511	.	+	2	Parent=Os02t0226300-00
Chr02	irgsp1_rep	CDS	7085544	7085663	.	+	0	Parent=Os02t0226300-00
Chr02	irgsp1_rep	CDS	7085764	7085890	.	+	0	Parent=Os02t0226300-00
Chr02	irgsp1_rep	CDS	7085971	7086155	.	+	2	Parent=Os02t0226300-00
Chr02	irgsp1_rep	CDS	7086232	7086354	.	+	0	Parent=Os02t0226300-00
Chr02	irgsp1_rep	CDS	7086880	7087012	.	+	0	Parent=Os02t0226300-00
Chr02	irgsp1_rep	CDS	7088330	7088382	.	+	2	Parent=Os02t0226300-00
Chr02	irgsp1_rep	mRNA	7087100	7087313	.	+	.	ID=Os02t0226350-01;Name=Os02t0226350-01;Locus_id=Os02g0226350;Note=Non-protein coding transcript.;Transcript_evidence=AK242418 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080080H01;TENOR=Os02t0226350-01
Chr02	irgsp1_rep	exon	7087100	7087313	.	+	.	Parent=Os02t0226350-01
Chr02	irgsp1_rep	mRNA	7088833	7089475	.	-	.	ID=Os02t0226400-01;Name=Os02t0226400-01;Locus_id=Os02g0226400;Note=Hypothetical gene.;Transcript_evidence=AK066447 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013065D03;Expression=AK066447;TENOR=Os02t0226400-01;KEGG=Os02t0226400-01
Chr02	irgsp1_rep	CDS	7089113	7089475	.	-	0	Parent=Os02t0226400-01
Chr02	irgsp1_rep	three_prime_UTR	7088833	7089112	.	-	.	Parent=Os02t0226400-01
Chr02	irgsp1_rep	mRNA	7089179	7089730	.	+	.	ID=Os02t0226500-01;Name=Os02t0226500-01;Locus_id=Os02g0226500;Note=Non-protein coding transcript.;Transcript_evidence=AK121267 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023105G02;TENOR=Os02t0226500-01
Chr02	irgsp1_rep	exon	7089179	7089730	.	+	.	Parent=Os02t0226500-01
Chr02	irgsp1_rep	mRNA	7097062	7100301	.	+	.	ID=Os02t0226600-01;Name=Os02t0226600-01;Locus_id=Os02g0226600;Note=Homeodomain-related domain containing protein.;Transcript_evidence=AK109849 (DDBJ%2C Best hit);ORF_evidence=B6SW91 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),POX (IPR006563),Homeobox KN domain (IPR008422),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);NIAS_FLcDNA=002-148-F06;Expression=AK109849;TENOR=Os02t0226600-01;KEGG=Os02t0226600-01
Chr02	irgsp1_rep	five_prime_UTR	7097062	7097356	.	+	.	Parent=Os02t0226600-01
Chr02	irgsp1_rep	five_prime_UTR	7097758	7097810	.	+	.	Parent=Os02t0226600-01
Chr02	irgsp1_rep	CDS	7097811	7098809	.	+	0	Parent=Os02t0226600-01
Chr02	irgsp1_rep	CDS	7098927	7099336	.	+	0	Parent=Os02t0226600-01
Chr02	irgsp1_rep	CDS	7099447	7099507	.	+	1	Parent=Os02t0226600-01
Chr02	irgsp1_rep	CDS	7099972	7100121	.	+	0	Parent=Os02t0226600-01
Chr02	irgsp1_rep	three_prime_UTR	7100122	7100301	.	+	.	Parent=Os02t0226600-01
Chr02	irgsp1_rep	mRNA	7097841	7098813	.	-	.	ID=Os02t0226700-00;Name=Os02t0226700-00;Locus_id=Os02g0226700;Note=Hypothetical protein.;Transcript_evidence=EU945524 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0226700-00
Chr02	irgsp1_rep	five_prime_UTR	7098087	7098813	.	-	.	Parent=Os02t0226700-00
Chr02	irgsp1_rep	CDS	7097841	7098086	.	-	0	Parent=Os02t0226700-00
Chr02	irgsp1_rep	mRNA	7111043	7116123	.	-	.	ID=Os02t0226801-00;Name=Os02t0226801-00;Locus_id=Os02g0226801;CGSNL Gene Symbol=PYL/RCAR2;CGSNL Gene Name=PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 2;Oryzabase Gene Symbol Synonym(s)=OsPYL/RCAR2%2C PYL2%2C OsPYL2%2C OsPYL3%2C PYL3;Oryzabase Gene Name Synonym(s)=pyrabactin resistance-like 2%2C PYR1-like 3%2C pyrabactin resistance 1-like 3;Note=Similar to bet v I allergen family protein.;Transcript_evidence=BT035072 (DDBJ);ORF_evidence=XP_002880736.1 (RefSeq);InterPro=Polyketide cyclase/dehydrase (IPR019587),START-like domain (IPR023393);Oryzabase=17870;TENOR=Os02t0226801-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	7116050	7116123	.	-	.	Parent=Os02t0226801-00
Chr02	irgsp1_rep	CDS	7115978	7116049	.	-	0	Parent=Os02t0226801-00
Chr02	irgsp1_rep	CDS	7111106	7111666	.	-	0	Parent=Os02t0226801-00
Chr02	irgsp1_rep	three_prime_UTR	7111043	7111105	.	-	.	Parent=Os02t0226801-00
Chr02	irgsp1_rep	mRNA	7115786	7119239	.	+	.	ID=Os02t0226900-01;Name=Os02t0226900-01;Locus_id=Os02g0226900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK064279 (DDBJ%2C Best hit);ORF_evidence=B9F4D7 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-105-G02;Expression=AK064279;TENOR=Os02t0226900-01;KEGG=Os02t0226900-01
Chr02	irgsp1_rep	five_prime_UTR	7115786	7115848	.	+	.	Parent=Os02t0226900-01
Chr02	irgsp1_rep	CDS	7115849	7116556	.	+	0	Parent=Os02t0226900-01
Chr02	irgsp1_rep	CDS	7117730	7118935	.	+	0	Parent=Os02t0226900-01
Chr02	irgsp1_rep	three_prime_UTR	7118936	7119239	.	+	.	Parent=Os02t0226900-01
Chr02	irgsp1_rep	mRNA	7126763	7132072	.	+	.	ID=Os02t0227000-01;Name=Os02t0227000-01;Locus_id=Os02g0227000;Note=HAD superfamily hydrolase-like%2C type 3 domain containing protein.;Transcript_evidence=AK288680 (DDBJ%2C Best hit);ORF_evidence=NP_850072.1 (RefSeq);GO=Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: metal ion binding (GO:0046872);InterPro=Uncharacterised protein family UPF0054%2C metalloprotease YbeY%2C predicted (IPR002036),HAD superfamily hydrolase-like%2C type 3 (IPR013200),Uncharacterised protein family UPF0054%2C conserved site (IPR020549),Metalloprotease catalytic domain%2C predicted (IPR023091),HAD-like domain (IPR023214);NIAS_FLcDNA=J090059G22;TENOR=Os02t0227000-01;KEGG=Os02t0227000-01
Chr02	irgsp1_rep	five_prime_UTR	7126763	7126813	.	+	.	Parent=Os02t0227000-01
Chr02	irgsp1_rep	CDS	7126814	7127164	.	+	0	Parent=Os02t0227000-01
Chr02	irgsp1_rep	CDS	7127326	7127577	.	+	0	Parent=Os02t0227000-01
Chr02	irgsp1_rep	CDS	7127666	7127761	.	+	0	Parent=Os02t0227000-01
Chr02	irgsp1_rep	CDS	7127913	7128087	.	+	0	Parent=Os02t0227000-01
Chr02	irgsp1_rep	CDS	7128183	7128263	.	+	2	Parent=Os02t0227000-01
Chr02	irgsp1_rep	CDS	7128351	7128448	.	+	2	Parent=Os02t0227000-01
Chr02	irgsp1_rep	CDS	7128728	7128820	.	+	0	Parent=Os02t0227000-01
Chr02	irgsp1_rep	CDS	7129507	7129578	.	+	0	Parent=Os02t0227000-01
Chr02	irgsp1_rep	CDS	7129898	7130017	.	+	0	Parent=Os02t0227000-01
Chr02	irgsp1_rep	CDS	7130110	7130160	.	+	0	Parent=Os02t0227000-01
Chr02	irgsp1_rep	CDS	7130926	7131111	.	+	0	Parent=Os02t0227000-01
Chr02	irgsp1_rep	CDS	7131255	7131311	.	+	0	Parent=Os02t0227000-01
Chr02	irgsp1_rep	three_prime_UTR	7131312	7131543	.	+	.	Parent=Os02t0227000-01
Chr02	irgsp1_rep	three_prime_UTR	7131669	7132072	.	+	.	Parent=Os02t0227000-01
Chr02	irgsp1_rep	mRNA	7132034	7133382	.	-	.	ID=Os02t0227100-01;Name=Os02t0227100-01;Locus_id=Os02g0227100;CGSNL Gene Symbol=O3L3;CGSNL Gene Name=OXS3-LIKE 3;Oryzabase Gene Symbol Synonym(s)=OsO3L3;Oryzabase Gene Name Synonym(s)=OXIDATIVE STRESS 3-like 3%2C OXS3-like 3;Note=Conserved hypothetical protein.;Transcript_evidence=AK066722 (DDBJ%2C Best hit);ORF_evidence=B9F4E0 (UniProt);NIAS_FLcDNA=J013087K21;Oryzabase=22446;TENOR=Os02t0227100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	7133024	7133382	.	-	0	Parent=Os02t0227100-01
Chr02	irgsp1_rep	CDS	7132160	7132481	.	-	1	Parent=Os02t0227100-01
Chr02	irgsp1_rep	three_prime_UTR	7132034	7132159	.	-	.	Parent=Os02t0227100-01
Chr02	irgsp1_rep	mRNA	7135190	7137965	.	-	.	ID=Os02t0227200-01;Name=Os02t0227200-01;Locus_id=Os02g0227200;CGSNL Gene Symbol=ENOD93B;CGSNL Gene Name=EARLY NODULIN 93B;Oryzabase Gene Symbol Synonym(s)=OsENOD93b;Oryzabase Gene Name Synonym(s)=early nodulin 93b;Note=Early nodulin.;Transcript_evidence=AK120885 (DDBJ%2C Best hit),AK072428 (DDBJ%2C Best hit);ORF_evidence=NP_001150497.1 (RefSeq);NIAS_FLcDNA=J023028P16,J023089C22;Oryzabase=14481;TENOR=Os02t0227200-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	7137907	7137965	.	-	.	Parent=Os02t0227200-01
Chr02	irgsp1_rep	CDS	7137846	7137906	.	-	0	Parent=Os02t0227200-01
Chr02	irgsp1_rep	CDS	7137282	7137343	.	-	2	Parent=Os02t0227200-01
Chr02	irgsp1_rep	CDS	7136872	7136947	.	-	0	Parent=Os02t0227200-01
Chr02	irgsp1_rep	CDS	7135476	7135567	.	-	2	Parent=Os02t0227200-01
Chr02	irgsp1_rep	three_prime_UTR	7135190	7135475	.	-	.	Parent=Os02t0227200-01
Chr02	irgsp1_rep	mRNA	7144545	7150536	.	+	.	ID=Os02t0227400-01;Name=Os02t0227400-01;Locus_id=Os02g0227400;Note=Poly(A) polymerase%2C RNA-binding region domain containing protein.;Transcript_evidence=AK103143 (DDBJ%2C Best hit);ORF_evidence=XP_002869239.1 (RefSeq);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Biological Process: RNA 3'-end processing (GO:0031123),Biological Process: RNA polyadenylation (GO:0043631),Cellular Component: nucleus (GO:0005634),Molecular Function: RNA binding (GO:0003723),Molecular Function: polynucleotide adenylyltransferase activity (GO:0004652),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=Nucleotidyl transferase domain (IPR002934),Poly(A) polymerase%2C RNA-binding domain (IPR007010),Poly(A) polymerase%2C central domain (IPR007012),Nucleotidyltransferase%2C class I%2C C-terminal-like (IPR011068),Poly(A) polymerase (IPR014492);NIAS_FLcDNA=J033120H04;Expression=AK103143;TENOR=Os02t0227400-01;KEGG=Os02t0227400-01 (EC:2.7.7.19)
Chr02	irgsp1_rep	five_prime_UTR	7144545	7145011	.	+	.	Parent=Os02t0227400-01
Chr02	irgsp1_rep	CDS	7145012	7145152	.	+	0	Parent=Os02t0227400-01
Chr02	irgsp1_rep	CDS	7145270	7145347	.	+	0	Parent=Os02t0227400-01
Chr02	irgsp1_rep	CDS	7145821	7145928	.	+	0	Parent=Os02t0227400-01
Chr02	irgsp1_rep	CDS	7147070	7147132	.	+	0	Parent=Os02t0227400-01
Chr02	irgsp1_rep	CDS	7147213	7147374	.	+	0	Parent=Os02t0227400-01
Chr02	irgsp1_rep	CDS	7147801	7147914	.	+	0	Parent=Os02t0227400-01
Chr02	irgsp1_rep	CDS	7147993	7148055	.	+	0	Parent=Os02t0227400-01
Chr02	irgsp1_rep	CDS	7148168	7148500	.	+	0	Parent=Os02t0227400-01
Chr02	irgsp1_rep	CDS	7148579	7148743	.	+	0	Parent=Os02t0227400-01
Chr02	irgsp1_rep	CDS	7148892	7149497	.	+	0	Parent=Os02t0227400-01
Chr02	irgsp1_rep	three_prime_UTR	7149498	7149738	.	+	.	Parent=Os02t0227400-01
Chr02	irgsp1_rep	three_prime_UTR	7149847	7149896	.	+	.	Parent=Os02t0227400-01
Chr02	irgsp1_rep	three_prime_UTR	7150069	7150536	.	+	.	Parent=Os02t0227400-01
Chr02	irgsp1_rep	mRNA	7154364	7155580	.	-	.	ID=Os02t0227500-00;Name=Os02t0227500-00;Locus_id=Os02g0227500;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK359681 (DDBJ);ORF_evidence=A3A4R7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os02t0227500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	7154833	7155580	.	-	0	Parent=Os02t0227500-00
Chr02	irgsp1_rep	CDS	7154364	7154722	.	-	2	Parent=Os02t0227500-00
Chr02	irgsp1_rep	mRNA	7164809	7166419	.	+	.	ID=Os02t0227600-01;Name=Os02t0227600-01;Locus_id=Os02g0227600;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=AK111918 (DDBJ%2C Best hit);ORF_evidence=B9F4E2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=J033148M04;TENOR=Os02t0227600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	7164809	7164821	.	+	.	Parent=Os02t0227600-01
Chr02	irgsp1_rep	CDS	7164822	7165588	.	+	0	Parent=Os02t0227600-01
Chr02	irgsp1_rep	CDS	7165686	7165704	.	+	1	Parent=Os02t0227600-01
Chr02	irgsp1_rep	three_prime_UTR	7165705	7166419	.	+	.	Parent=Os02t0227600-01
Chr02	irgsp1_rep	mRNA	7172422	7175962	.	-	.	ID=Os02t0227700-01;Name=Os02t0227700-01;Locus_id=Os02g0227700;CGSNL Gene Symbol=RLK5;Oryzabase Gene Symbol Synonym(s)=OsRLK5;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK243503 (DDBJ%2C Best hit);ORF_evidence=A2X2M8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J100074L11;Oryzabase=21525;TENOR=Os02t0227700-01;KEGG=Os02t0227700-01
Chr02	irgsp1_rep	five_prime_UTR	7175909	7175962	.	-	.	Parent=Os02t0227700-01
Chr02	irgsp1_rep	CDS	7173283	7175908	.	-	0	Parent=Os02t0227700-01
Chr02	irgsp1_rep	CDS	7172556	7172944	.	-	2	Parent=Os02t0227700-01
Chr02	irgsp1_rep	three_prime_UTR	7172422	7172555	.	-	.	Parent=Os02t0227700-01
Chr02	irgsp1_rep	mRNA	7179394	7184521	.	-	.	ID=Os02t0227900-00;Name=Os02t0227900-00;Locus_id=Os02g0227900;CGSNL Gene Symbol=RLCK70;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 70;Oryzabase Gene Symbol Synonym(s)=OsRLCK70;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 70;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9F4E3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);Oryzabase=18785;TENOR=Os02t0227900-00
Chr02	irgsp1_rep	CDS	7183859	7184521	.	-	0	Parent=Os02t0227900-00
Chr02	irgsp1_rep	CDS	7183479	7183791	.	-	0	Parent=Os02t0227900-00
Chr02	irgsp1_rep	CDS	7179394	7179572	.	-	2	Parent=Os02t0227900-00
Chr02	irgsp1_rep	mRNA	7186769	7187287	.	-	.	ID=Os02t0228000-00;Name=Os02t0228000-00;Locus_id=Os02g0228000;CGSNL Gene Symbol=RLCK70;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 70;Oryzabase Gene Symbol Synonym(s)=OsRLCK70;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 70;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AJ606013 (DDBJ);ORF_evidence=Q6H5Y4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);Oryzabase=18785;TENOR=Os02t0228000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	7186769	7187287	.	-	0	Parent=Os02t0228000-00
Chr02	irgsp1_rep	mRNA	7219172	7219630	.	-	.	ID=Os02t0228151-00;Name=Os02t0228151-00;Locus_id=Os02g0228151;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2X2N4 (UniProt);TENOR=Os02t0228151-00
Chr02	irgsp1_rep	CDS	7219619	7219630	.	-	0	Parent=Os02t0228151-00
Chr02	irgsp1_rep	CDS	7219172	7219513	.	-	0	Parent=Os02t0228151-00
Chr02	irgsp1_rep	mRNA	7220633	7224467	.	-	.	ID=Os02t0228300-01;Name=Os02t0228300-01;Locus_id=Os02g0228300;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK111620 (DDBJ%2C Best hit);ORF_evidence=A2X2N4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013109J03;Expression=AK111620;TENOR=Os02t0228300-01;KEGG=Os02t0228300-01
Chr02	irgsp1_rep	five_prime_UTR	7224408	7224467	.	-	.	Parent=Os02t0228300-01
Chr02	irgsp1_rep	CDS	7221833	7224407	.	-	0	Parent=Os02t0228300-01
Chr02	irgsp1_rep	CDS	7221235	7221719	.	-	2	Parent=Os02t0228300-01
Chr02	irgsp1_rep	three_prime_UTR	7220633	7221234	.	-	.	Parent=Os02t0228300-01
Chr02	irgsp1_rep	mRNA	7221275	7223499	.	+	.	ID=Os02t0228400-01;Name=Os02t0228400-01;Locus_id=Os02g0228400;Note=Hypothetical protein.;Transcript_evidence=AK111683 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013164N05;Expression=AK111683;TENOR=Os02t0228400-01;KEGG=Os02t0228400-01
Chr02	irgsp1_rep	five_prime_UTR	7221275	7221484	.	+	.	Parent=Os02t0228400-01
Chr02	irgsp1_rep	CDS	7221485	7221970	.	+	0	Parent=Os02t0228400-01
Chr02	irgsp1_rep	three_prime_UTR	7221971	7223499	.	+	.	Parent=Os02t0228400-01
Chr02	irgsp1_rep	mRNA	7236897	7238134	.	-	.	ID=Os02t0228600-01;Name=Os02t0228600-01;Locus_id=Os02g0228600;Note=Hypothetical gene.;Transcript_evidence=AK111070 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-175-E05;Expression=AK111070;TENOR=Os02t0228600-01;KEGG=Os02t0228600-01
Chr02	irgsp1_rep	CDS	7237947	7238134	.	-	0	Parent=Os02t0228600-01
Chr02	irgsp1_rep	CDS	7237204	7237240	.	-	1	Parent=Os02t0228600-01
Chr02	irgsp1_rep	three_prime_UTR	7236897	7237203	.	-	.	Parent=Os02t0228600-01
Chr02	irgsp1_rep	mRNA	7245057	7248588	.	-	.	ID=Os02t0228900-01;Name=Os02t0228900-01;Locus_id=Os02g0228900;CGSNL Gene Symbol=IAA7;Oryzabase Gene Symbol Synonym(s)=OsIAA7%2C DLN51%2C OsDLN51;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 7%2C DLN repressor 51%2C DLN motif protein 51;Note=Similar to Auxin-responsive protein IAA18 (Indoleacetic acid-induced protein 18).;Transcript_evidence=AK121870 (DDBJ%2C Best hit);ORF_evidence=Q6H543 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Aux/IAA-ARF-dimerisation (IPR011525);NIAS_FLcDNA=J033103P10;Oryzabase=10898;Expression=AK121870;TENOR=Os02t0228900-01;KEGG=Os02t0228900-01
Chr02	irgsp1_rep	five_prime_UTR	7248331	7248588	.	-	.	Parent=Os02t0228900-01
Chr02	irgsp1_rep	CDS	7248042	7248330	.	-	0	Parent=Os02t0228900-01
Chr02	irgsp1_rep	CDS	7247267	7247375	.	-	2	Parent=Os02t0228900-01
Chr02	irgsp1_rep	CDS	7246121	7246374	.	-	1	Parent=Os02t0228900-01
Chr02	irgsp1_rep	CDS	7245722	7245869	.	-	2	Parent=Os02t0228900-01
Chr02	irgsp1_rep	CDS	7245437	7245497	.	-	1	Parent=Os02t0228900-01
Chr02	irgsp1_rep	CDS	7245303	7245344	.	-	0	Parent=Os02t0228900-01
Chr02	irgsp1_rep	three_prime_UTR	7245057	7245302	.	-	.	Parent=Os02t0228900-01
Chr02	irgsp1_rep	mRNA	7258694	7260380	.	-	.	ID=Os02t0229000-01;Name=Os02t0229000-01;Locus_id=Os02g0229000;Note=Similar to 40S ribosomal protein S19-like.;Transcript_evidence=AK058248 (DDBJ%2C Best hit);ORF_evidence=A2X2N6 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S24e (IPR001976),Nucleotide-binding%2C alpha-beta plait (IPR012677),Ribosomal protein L23/L15e (IPR012678),Ribosomal S24e conserved site (IPR018098);NIAS_FLcDNA=001-012-B05;Expression=AK058248;TENOR=Os02t0229000-01;KEGG=Os02t0229000-01
Chr02	irgsp1_rep	five_prime_UTR	7260287	7260380	.	-	.	Parent=Os02t0229000-01
Chr02	irgsp1_rep	CDS	7260161	7260286	.	-	0	Parent=Os02t0229000-01
Chr02	irgsp1_rep	CDS	7259891	7260061	.	-	0	Parent=Os02t0229000-01
Chr02	irgsp1_rep	CDS	7259037	7259123	.	-	0	Parent=Os02t0229000-01
Chr02	irgsp1_rep	CDS	7258902	7258934	.	-	0	Parent=Os02t0229000-01
Chr02	irgsp1_rep	three_prime_UTR	7258694	7258901	.	-	.	Parent=Os02t0229000-01
Chr02	irgsp1_rep	mRNA	7263803	7267225	.	+	.	ID=Os02t0229200-01;Name=Os02t0229200-01;Locus_id=Os02g0229200;Note=Hypothetical conserved gene.;Transcript_evidence=AK288860 (DDBJ%2C Best hit);ORF_evidence=Q6H538 (UniProt);NIAS_FLcDNA=J090077C13;TENOR=Os02t0229200-01;KEGG=Os02t0229200-01
Chr02	irgsp1_rep	five_prime_UTR	7263803	7264674	.	+	.	Parent=Os02t0229200-01
Chr02	irgsp1_rep	CDS	7264675	7265148	.	+	0	Parent=Os02t0229200-01
Chr02	irgsp1_rep	three_prime_UTR	7265149	7267225	.	+	.	Parent=Os02t0229200-01
Chr02	irgsp1_rep	mRNA	7273036	7278242	.	+	.	ID=Os02t0229400-01;Name=Os02t0229400-01;Locus_id=Os02g0229400;RAP-DB Gene Symbol Synonym(s)=TMT2%2C OsTMT2;RAP-DB Gene Name Synonym(s)=TONOPLAST MONOSACCHARIDE TRANSPORTER 2;CGSNL Gene Symbol=TMT2;CGSNL Gene Name=TONOPLAST MONOSACCHARIDE TRANSPORTER 2;Oryzabase Gene Symbol Synonym(s)=OsTMT2;Note=Tonoplast monosaccharide transpoter%2C Vacuolar sugar transport;Transcript_evidence=GU066766 (Genbank),AK120560 (Genbank);ORF_evidence=Q6H536 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J013132C18;Manual Curation=May 18%2C 2010;Literature_PMID=20202129;Oryzabase=10292;Expression=AK120560;TENOR=Os02t0229400-01;KEGG=Os02t0229400-01
Chr02	irgsp1_rep	five_prime_UTR	7273036	7273303	.	+	.	Parent=Os02t0229400-01
Chr02	irgsp1_rep	five_prime_UTR	7273834	7273852	.	+	.	Parent=Os02t0229400-01
Chr02	irgsp1_rep	CDS	7273853	7273931	.	+	0	Parent=Os02t0229400-01
Chr02	irgsp1_rep	CDS	7274391	7274957	.	+	2	Parent=Os02t0229400-01
Chr02	irgsp1_rep	CDS	7276021	7276985	.	+	2	Parent=Os02t0229400-01
Chr02	irgsp1_rep	CDS	7277101	7277288	.	+	0	Parent=Os02t0229400-01
Chr02	irgsp1_rep	CDS	7277397	7277838	.	+	1	Parent=Os02t0229400-01
Chr02	irgsp1_rep	three_prime_UTR	7277839	7278242	.	+	.	Parent=Os02t0229400-01
Chr02	irgsp1_rep	mRNA	7274513	7278176	.	+	.	ID=Os02t0229400-02;Name=Os02t0229400-02;Locus_id=Os02g0229400;CGSNL Gene Symbol=TMT2;CGSNL Gene Name=TONOPLAST MONOSACCHARIDE TRANSPORTER 2;Oryzabase Gene Symbol Synonym(s)=OsTMT2;Note=Similar to Hexose transporter.;Transcript_evidence=AK099716 (DDBJ%2C Best hit);ORF_evidence=Q8GT52 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J013086B19;Oryzabase=10292;Expression=AK099716;TENOR=Os02t0229400-02;KEGG=Os02t0229400-02
Chr02	irgsp1_rep	CDS	7274513	7274957	.	+	0	Parent=Os02t0229400-02
Chr02	irgsp1_rep	CDS	7276021	7276985	.	+	2	Parent=Os02t0229400-02
Chr02	irgsp1_rep	CDS	7277101	7277288	.	+	0	Parent=Os02t0229400-02
Chr02	irgsp1_rep	CDS	7277397	7277838	.	+	1	Parent=Os02t0229400-02
Chr02	irgsp1_rep	three_prime_UTR	7277839	7278176	.	+	.	Parent=Os02t0229400-02
Chr02	irgsp1_rep	mRNA	7273826	7278165	.	-	.	ID=Os02t0229501-00;Name=Os02t0229501-00;Locus_id=Os02g0229501;Note=Hypothetical protein.;Transcript_evidence=tplb0045g05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0229501-00
Chr02	irgsp1_rep	five_prime_UTR	7277415	7278165	.	-	.	Parent=Os02t0229501-00
Chr02	irgsp1_rep	five_prime_UTR	7277098	7277303	.	-	.	Parent=Os02t0229501-00
Chr02	irgsp1_rep	five_prime_UTR	7276551	7276982	.	-	.	Parent=Os02t0229501-00
Chr02	irgsp1_rep	CDS	7276173	7276550	.	-	0	Parent=Os02t0229501-00
Chr02	irgsp1_rep	three_prime_UTR	7276018	7276172	.	-	.	Parent=Os02t0229501-00
Chr02	irgsp1_rep	three_prime_UTR	7274405	7274954	.	-	.	Parent=Os02t0229501-00
Chr02	irgsp1_rep	three_prime_UTR	7273826	7273945	.	-	.	Parent=Os02t0229501-00
Chr02	irgsp1_rep	mRNA	7279704	7282395	.	-	.	ID=Os02t0229600-00;Name=Os02t0229600-00;Locus_id=Os02g0229600;Oryzabase Gene Symbol Synonym(s)=OsSTA55;Note=Similar to ATP binding / microtubule motor.;Transcript_evidence=AK363779 (DDBJ);ORF_evidence=NP_177527.3 (RefSeq);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752);Oryzabase=19358;TENOR=Os02t0229600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	7282278	7282395	.	-	0	Parent=Os02t0229600-00
Chr02	irgsp1_rep	CDS	7282082	7282177	.	-	2	Parent=Os02t0229600-00
Chr02	irgsp1_rep	CDS	7281818	7281997	.	-	2	Parent=Os02t0229600-00
Chr02	irgsp1_rep	CDS	7281556	7281662	.	-	2	Parent=Os02t0229600-00
Chr02	irgsp1_rep	CDS	7281261	7281441	.	-	0	Parent=Os02t0229600-00
Chr02	irgsp1_rep	CDS	7280884	7281046	.	-	2	Parent=Os02t0229600-00
Chr02	irgsp1_rep	CDS	7280551	7280804	.	-	1	Parent=Os02t0229600-00
Chr02	irgsp1_rep	CDS	7280303	7280475	.	-	2	Parent=Os02t0229600-00
Chr02	irgsp1_rep	CDS	7279704	7280111	.	-	0	Parent=Os02t0229600-00
Chr02	irgsp1_rep	mRNA	7300585	7301472	.	+	.	ID=Os02t0229800-00;Name=Os02t0229800-00;Locus_id=Os02g0229800;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001046362.2 (RefSeq);TENOR=Os02t0229800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	7300585	7301472	.	+	0	Parent=Os02t0229800-00
Chr02	irgsp1_rep	mRNA	7310363	7310992	.	+	.	ID=Os02t0229900-00;Name=Os02t0229900-00;Locus_id=Os02g0229900;Note=Hypothetical conserved gene.;Transcript_evidence=FP094593 (DDBJ);ORF_evidence=XP_002889325.1 (RefSeq);InterPro=Protein of unknown function DUF1677%2C plant (IPR012876);TENOR=Os02t0229900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	7310363	7310419	.	+	.	Parent=Os02t0229900-00
Chr02	irgsp1_rep	CDS	7310420	7310992	.	+	0	Parent=Os02t0229900-00
Chr02	irgsp1_rep	mRNA	7314100	7314657	.	-	.	ID=Os02t0230000-01;Name=Os02t0230000-01;Locus_id=Os02g0230000;Note=Conserved hypothetical protein.;Transcript_evidence=AK109187 (DDBJ%2C Best hit);ORF_evidence=B8AEJ4 (UniProt);NIAS_FLcDNA=002-156-A10;Expression=AK109187;TENOR=Os02t0230000-01;KEGG=Os02t0230000-01
Chr02	irgsp1_rep	five_prime_UTR	7314627	7314657	.	-	.	Parent=Os02t0230000-01
Chr02	irgsp1_rep	CDS	7314517	7314626	.	-	0	Parent=Os02t0230000-01
Chr02	irgsp1_rep	CDS	7314284	7314437	.	-	1	Parent=Os02t0230000-01
Chr02	irgsp1_rep	three_prime_UTR	7314100	7314283	.	-	.	Parent=Os02t0230000-01
Chr02	irgsp1_rep	mRNA	7312011	7314634	.	-	.	ID=Os02t0230000-02;Name=Os02t0230000-02;Locus_id=Os02g0230000;Note=Conserved hypothetical protein.;Transcript_evidence=AK109235 (DDBJ%2C Best hit);ORF_evidence=B8AEJ4 (UniProt);NIAS_FLcDNA=002-156-F07;Expression=AK109235;TENOR=Os02t0230000-02;KEGG=Os02t0230000-02
Chr02	irgsp1_rep	five_prime_UTR	7314627	7314634	.	-	.	Parent=Os02t0230000-02
Chr02	irgsp1_rep	CDS	7314517	7314626	.	-	0	Parent=Os02t0230000-02
Chr02	irgsp1_rep	CDS	7314284	7314437	.	-	1	Parent=Os02t0230000-02
Chr02	irgsp1_rep	three_prime_UTR	7314250	7314283	.	-	.	Parent=Os02t0230000-02
Chr02	irgsp1_rep	three_prime_UTR	7312011	7312231	.	-	.	Parent=Os02t0230000-02
Chr02	irgsp1_rep	mRNA	7316399	7319487	.	+	.	ID=Os02t0230100-01;Name=Os02t0230100-01;Locus_id=Os02g0230100;Note=Leucine-rich repeat%2C SDS22 containing protein.;Transcript_evidence=AK101441 (DDBJ%2C Best hit);ORF_evidence=NP_197469.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=J033039E09;Expression=AK101441;TENOR=Os02t0230100-01;KEGG=Os02t0230100-01
Chr02	irgsp1_rep	five_prime_UTR	7316399	7316461	.	+	.	Parent=Os02t0230100-01
Chr02	irgsp1_rep	CDS	7316462	7316746	.	+	0	Parent=Os02t0230100-01
Chr02	irgsp1_rep	CDS	7317332	7317562	.	+	0	Parent=Os02t0230100-01
Chr02	irgsp1_rep	CDS	7317673	7317819	.	+	0	Parent=Os02t0230100-01
Chr02	irgsp1_rep	CDS	7317902	7318044	.	+	0	Parent=Os02t0230100-01
Chr02	irgsp1_rep	CDS	7318167	7318281	.	+	1	Parent=Os02t0230100-01
Chr02	irgsp1_rep	CDS	7318840	7318920	.	+	0	Parent=Os02t0230100-01
Chr02	irgsp1_rep	three_prime_UTR	7318921	7319487	.	+	.	Parent=Os02t0230100-01
Chr02	irgsp1_rep	mRNA	7321447	7322881	.	+	.	ID=Os02t0230200-01;Name=Os02t0230200-01;Locus_id=Os02g0230200;Note=Conserved hypothetical protein.;Transcript_evidence=AK105482 (DDBJ%2C Best hit);ORF_evidence=A2X2P4 (UniProt);NIAS_FLcDNA=001-127-B03;Expression=AK105482;TENOR=Os02t0230200-01;KEGG=Os02t0230200-01
Chr02	irgsp1_rep	five_prime_UTR	7321447	7321514	.	+	.	Parent=Os02t0230200-01
Chr02	irgsp1_rep	CDS	7321515	7322573	.	+	0	Parent=Os02t0230200-01
Chr02	irgsp1_rep	three_prime_UTR	7322574	7322881	.	+	.	Parent=Os02t0230200-01
Chr02	irgsp1_rep	mRNA	7323913	7325155	.	+	.	ID=Os02t0230250-00;Name=Os02t0230250-00;Locus_id=Os02g0230250;Note=Non-protein coding transcript.;Transcript_evidence=BT009646 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0230250-00
Chr02	irgsp1_rep	exon	7323913	7324374	.	+	.	Parent=Os02t0230250-00
Chr02	irgsp1_rep	exon	7324460	7324688	.	+	.	Parent=Os02t0230250-00
Chr02	irgsp1_rep	exon	7325014	7325155	.	+	.	Parent=Os02t0230250-00
Chr02	irgsp1_rep	mRNA	7323916	7324292	.	-	.	ID=Os02t0230300-01;Name=Os02t0230300-01;Locus_id=Os02g0230300;Note=En/Spm-like transposon protein (Protodermal factor 1).;Transcript_evidence=AK058752 (DDBJ%2C Best hit);ORF_evidence=Q56UU6 (UniProt);NIAS_FLcDNA=001-019-H10;Expression=AK058752;TENOR=Os02t0230300-01;KEGG=Os02t0230300-01
Chr02	irgsp1_rep	CDS	7324056	7324292	.	-	0	Parent=Os02t0230300-01
Chr02	irgsp1_rep	three_prime_UTR	7323916	7324055	.	-	.	Parent=Os02t0230300-01
Chr02	irgsp1_rep	mRNA	7337800	7338329	.	+	.	ID=Os02t0230625-00;Name=Os02t0230625-00;Locus_id=Os02g0230625;Note=Hypothetical protein.;Transcript_evidence=EU946393 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0230625-00
Chr02	irgsp1_rep	five_prime_UTR	7337800	7337800	.	+	.	Parent=Os02t0230625-00
Chr02	irgsp1_rep	CDS	7337801	7338329	.	+	0	Parent=Os02t0230625-00
Chr02	irgsp1_rep	mRNA	7365270	7365975	.	-	.	ID=Os02t0230875-00;Name=Os02t0230875-00;Locus_id=Os02g0230875;Note=Conserved hypothetical protein.;Transcript_evidence=EU945783 (DDBJ);ORF_evidence=C0PA66 (UniProt);TENOR=Os02t0230875-00
Chr02	irgsp1_rep	five_prime_UTR	7365936	7365975	.	-	.	Parent=Os02t0230875-00
Chr02	irgsp1_rep	CDS	7365775	7365935	.	-	0	Parent=Os02t0230875-00
Chr02	irgsp1_rep	CDS	7365270	7365576	.	-	1	Parent=Os02t0230875-00
Chr02	irgsp1_rep	mRNA	7365983	7366298	.	+	.	ID=Os02t0231000-00;Name=Os02t0231000-00;Locus_id=Os02g0231000;CGSNL Gene Symbol=ERF38;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 38;Oryzabase Gene Symbol Synonym(s)=OsERF#038%2C OsERF038%2C OsERF38%2C AP2/EREBP#082%2C AP2/EREBP82%2C OsDREB4-1;Oryzabase Gene Name Synonym(s)=ethylene response factor 38%2C APETALA2/ethylene-responsive element binding protein 82;Note=Hypothetical conserved gene.;Transcript_evidence=CT835470 (DDBJ%2C Best hit);ORF_evidence=Q6ETB0 (UniProt);Oryzabase=10556;TENOR=Os02t0231000-00;KEGG=Os02t0231000-00
Chr02	irgsp1_rep	five_prime_UTR	7365983	7365984	.	+	.	Parent=Os02t0231000-00
Chr02	irgsp1_rep	CDS	7365985	7366053	.	+	0	Parent=Os02t0231000-00
Chr02	irgsp1_rep	three_prime_UTR	7366054	7366298	.	+	.	Parent=Os02t0231000-00
Chr02	irgsp1_rep	mRNA	7431357	7433852	.	+	.	ID=Os02t0231600-01;Name=Os02t0231600-01;Locus_id=Os02g0231600;Note=Similar to Transposase (Fragment).;Transcript_evidence=AK101656 (DDBJ%2C Best hit);ORF_evidence=NP_001136669.1 (RefSeq);GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Putative harbinger transposase-derived nuclease (IPR006912);NIAS_FLcDNA=J033057F03;Expression=AK101656;TENOR=Os02t0231600-01;KEGG=Os02t0231600-01
Chr02	irgsp1_rep	five_prime_UTR	7431357	7431641	.	+	.	Parent=Os02t0231600-01
Chr02	irgsp1_rep	five_prime_UTR	7432384	7432394	.	+	.	Parent=Os02t0231600-01
Chr02	irgsp1_rep	CDS	7432395	7432880	.	+	0	Parent=Os02t0231600-01
Chr02	irgsp1_rep	CDS	7432963	7433673	.	+	0	Parent=Os02t0231600-01
Chr02	irgsp1_rep	three_prime_UTR	7433674	7433852	.	+	.	Parent=Os02t0231600-01
Chr02	irgsp1_rep	mRNA	7434759	7438310	.	-	.	ID=Os02t0231700-00;Name=Os02t0231700-00;Locus_id=Os02g0231700;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK367291 (DDBJ);ORF_evidence=Q6ETA1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os02t0231700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	7435448	7438310	.	-	0	Parent=Os02t0231700-00
Chr02	irgsp1_rep	CDS	7434759	7435141	.	-	2	Parent=Os02t0231700-00
Chr02	irgsp1_rep	mRNA	7439852	7443657	.	+	.	ID=Os02t0231850-01;Name=Os02t0231850-01;Locus_id=Os02g0231850;Note=Hypothetical conserved gene.;Transcript_evidence=AK289141 (DDBJ%2C Best hit);ORF_evidence=NP_001058467.2 (RefSeq);NIAS_FLcDNA=J090099F05;TENOR=Os02t0231850-01;KEGG=Os02t0231850-01
Chr02	irgsp1_rep	five_prime_UTR	7439852	7442068	.	+	.	Parent=Os02t0231850-01
Chr02	irgsp1_rep	CDS	7442069	7442248	.	+	0	Parent=Os02t0231850-01
Chr02	irgsp1_rep	three_prime_UTR	7442249	7443657	.	+	.	Parent=Os02t0231850-01
Chr02	irgsp1_rep	mRNA	7464028	7465505	.	+	.	ID=Os02t0232000-01;Name=Os02t0232000-01;Locus_id=Os02g0232000;CGSNL Gene Symbol=HSFC2A;CGSNL Gene Name=HEAT STRESS TRANSCRIPTION FACTOR C2A;Oryzabase Gene Symbol Synonym(s)=HSfC2a%2C OsHsfC2a%2C OsHsf-05%2C HSF05%2C OsHSF5%2C HSF5;Oryzabase Gene Name Synonym(s)=Heat stress transcription factor C2a%2C Heat stress transcription factor C-2a%2C Heat stress transcription factor 5;Note=Similar to Heat shock transcription factor 29 (Fragment).;Transcript_evidence=AK106488 (DDBJ%2C Best hit);ORF_evidence=Q6EUG4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Heat shock factor (HSF)-type%2C DNA-binding (IPR000232),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=002-105-A02;Oryzabase=8570;Expression=AK106488;TENOR=Os02t0232000-01;KEGG=Os02t0232000-01
Chr02	irgsp1_rep	five_prime_UTR	7464028	7464098	.	+	.	Parent=Os02t0232000-01
Chr02	irgsp1_rep	CDS	7464099	7464317	.	+	0	Parent=Os02t0232000-01
Chr02	irgsp1_rep	CDS	7464404	7465081	.	+	0	Parent=Os02t0232000-01
Chr02	irgsp1_rep	three_prime_UTR	7465082	7465505	.	+	.	Parent=Os02t0232000-01
Chr02	irgsp1_rep	mRNA	7464392	7465082	.	-	.	ID=Os02t0232050-00;Name=Os02t0232050-00;Locus_id=Os02g0232050;Note=Hypothetical gene.;Transcript_evidence=EU972049 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0232050-00;KEGG=Os02t0232050-00
Chr02	irgsp1_rep	five_prime_UTR	7465082	7465082	.	-	.	Parent=Os02t0232050-00
Chr02	irgsp1_rep	CDS	7464859	7465081	.	-	0	Parent=Os02t0232050-00
Chr02	irgsp1_rep	CDS	7464392	7464783	.	-	2	Parent=Os02t0232050-00
Chr02	irgsp1_rep	mRNA	7467475	7470926	.	-	.	ID=Os02t0232100-01;Name=Os02t0232100-01;Locus_id=Os02g0232100;CGSNL Gene Symbol=HEI10;CGSNL Gene Name=HUMAN ENHANCER OF INVASION 10;Oryzabase Gene Symbol Synonym(s)=HEI10A%2C HEI10B%2C OsHEI10;Oryzabase Gene Name Synonym(s)=ZMM protein HEI10%2C human enhancer of invasion 10%2C Human enhancer of invasion10;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK100854 (DDBJ%2C Best hit);ORF_evidence=NP_001152027.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J023123K05;Oryzabase=12253;Expression=AK100854;TENOR=Os02t0232100-01;KEGG=Os02t0232100-01 (EC:6.3.2.19)
Chr02	irgsp1_rep	five_prime_UTR	7470659	7470926	.	-	.	Parent=Os02t0232100-01
Chr02	irgsp1_rep	five_prime_UTR	7469478	7469526	.	-	.	Parent=Os02t0232100-01
Chr02	irgsp1_rep	CDS	7469408	7469477	.	-	0	Parent=Os02t0232100-01
Chr02	irgsp1_rep	CDS	7469216	7469288	.	-	2	Parent=Os02t0232100-01
Chr02	irgsp1_rep	CDS	7468862	7468907	.	-	1	Parent=Os02t0232100-01
Chr02	irgsp1_rep	CDS	7468756	7468786	.	-	0	Parent=Os02t0232100-01
Chr02	irgsp1_rep	CDS	7468285	7468540	.	-	2	Parent=Os02t0232100-01
Chr02	irgsp1_rep	CDS	7468026	7468189	.	-	1	Parent=Os02t0232100-01
Chr02	irgsp1_rep	CDS	7467552	7467823	.	-	2	Parent=Os02t0232100-01
Chr02	irgsp1_rep	three_prime_UTR	7467475	7467551	.	-	.	Parent=Os02t0232100-01
Chr02	irgsp1_rep	mRNA	7466238	7467724	.	-	.	ID=Os02t0232100-02;Name=Os02t0232100-02;Locus_id=Os02g0232100;CGSNL Gene Symbol=HEI10;CGSNL Gene Name=HUMAN ENHANCER OF INVASION 10;Oryzabase Gene Symbol Synonym(s)=HEI10A%2C HEI10B%2C OsHEI10;Oryzabase Gene Name Synonym(s)=ZMM protein HEI10%2C human enhancer of invasion 10%2C Human enhancer of invasion10;Note=Similar to DNA binding protein.;Transcript_evidence=AK108775 (DDBJ%2C Best hit);ORF_evidence=NP_001152027.1 (RefSeq);NIAS_FLcDNA=002-150-H11;Oryzabase=12253;Expression=AK108775;TENOR=Os02t0232100-02;KEGG=Os02t0232100-02 (EC:6.3.2.19)
Chr02	irgsp1_rep	five_prime_UTR	7467723	7467724	.	-	.	Parent=Os02t0232100-02
Chr02	irgsp1_rep	CDS	7467556	7467722	.	-	0	Parent=Os02t0232100-02
Chr02	irgsp1_rep	CDS	7467386	7467392	.	-	1	Parent=Os02t0232100-02
Chr02	irgsp1_rep	three_prime_UTR	7466238	7467385	.	-	.	Parent=Os02t0232100-02
Chr02	irgsp1_rep	mRNA	7485426	7487005	.	+	.	ID=Os02t0232300-00;Name=Os02t0232300-00;Locus_id=Os02g0232300;CGSNL Gene Symbol=FTL13;CGSNL Gene Name=FLOWERING TIME LIKE GENE 13;Oryzabase Gene Symbol Synonym(s)=OsFTL13;Oryzabase Gene Name Synonym(s)=FT-like gene 13;Note=Similar to ZCN13.;Transcript_evidence=FP101609 (DDBJ);ORF_evidence=A9LLY7 (UniProt);InterPro=Phosphatidylethanolamine-binding%2C conserved site (IPR001858),Phosphatidylethanolamine-binding protein PEBP (IPR008914);Oryzabase=11234;TENOR=Os02t0232300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	7485426	7485623	.	+	0	Parent=Os02t0232300-00
Chr02	irgsp1_rep	CDS	7485813	7485874	.	+	0	Parent=Os02t0232300-00
Chr02	irgsp1_rep	CDS	7486506	7486546	.	+	1	Parent=Os02t0232300-00
Chr02	irgsp1_rep	CDS	7486749	7487005	.	+	2	Parent=Os02t0232300-00
Chr02	irgsp1_rep	mRNA	7491229	7497708	.	+	.	ID=Os02t0232400-01;Name=Os02t0232400-01;Locus_id=Os02g0232400;Note=Similar to Citrate synthase.;Transcript_evidence=AK120755 (DDBJ%2C Best hit);ORF_evidence=B8AEK0 (UniProt);GO=Biological Process: tricarboxylic acid cycle (GO:0006099),Biological Process: cellular carbohydrate metabolic process (GO:0044262),Molecular Function: transferase activity%2C transferring acyl groups%2C acyl groups converted into alkyl on transfer (GO:0046912);InterPro=Citrate synthase-like (IPR002020),Citrate synthase-like%2C core (IPR016141),Citrate synthase-like%2C large alpha subdomain (IPR016142),Citrate synthase-like%2C small alpha subdomain (IPR016143),Citrate synthase active site (IPR019810),Citrate synthase%2C bacterial-type (IPR024176);NIAS_FLcDNA=J023007B06;TENOR=Os02t0232400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	7491229	7491346	.	+	.	Parent=Os02t0232400-01
Chr02	irgsp1_rep	CDS	7491347	7491559	.	+	0	Parent=Os02t0232400-01
Chr02	irgsp1_rep	CDS	7492237	7492417	.	+	0	Parent=Os02t0232400-01
Chr02	irgsp1_rep	CDS	7492494	7492579	.	+	2	Parent=Os02t0232400-01
Chr02	irgsp1_rep	CDS	7492685	7492789	.	+	0	Parent=Os02t0232400-01
Chr02	irgsp1_rep	CDS	7492959	7493021	.	+	0	Parent=Os02t0232400-01
Chr02	irgsp1_rep	CDS	7493304	7493413	.	+	0	Parent=Os02t0232400-01
Chr02	irgsp1_rep	CDS	7493544	7493663	.	+	1	Parent=Os02t0232400-01
Chr02	irgsp1_rep	CDS	7493733	7493808	.	+	1	Parent=Os02t0232400-01
Chr02	irgsp1_rep	CDS	7494154	7494227	.	+	0	Parent=Os02t0232400-01
Chr02	irgsp1_rep	CDS	7494374	7494494	.	+	1	Parent=Os02t0232400-01
Chr02	irgsp1_rep	CDS	7496459	7496556	.	+	0	Parent=Os02t0232400-01
Chr02	irgsp1_rep	CDS	7496635	7496758	.	+	1	Parent=Os02t0232400-01
Chr02	irgsp1_rep	CDS	7497273	7497404	.	+	0	Parent=Os02t0232400-01
Chr02	irgsp1_rep	three_prime_UTR	7497405	7497708	.	+	.	Parent=Os02t0232400-01
Chr02	irgsp1_rep	mRNA	7493302	7497649	.	+	.	ID=Os02t0232400-02;Name=Os02t0232400-02;Locus_id=Os02g0232400;Note=Similar to Citrate synthase.;Transcript_evidence=AK058734 (DDBJ%2C Best hit);ORF_evidence=B9F4F6 (UniProt);GO=Biological Process: tricarboxylic acid cycle (GO:0006099),Biological Process: cellular carbohydrate metabolic process (GO:0044262),Molecular Function: transferase activity%2C transferring acyl groups%2C acyl groups converted into alkyl on transfer (GO:0046912);InterPro=Citrate synthase-like (IPR002020),Citrate synthase-like%2C core (IPR016141),Citrate synthase-like%2C large alpha subdomain (IPR016142),Citrate synthase-like%2C small alpha subdomain (IPR016143),Citrate synthase active site (IPR019810);NIAS_FLcDNA=001-019-G01;Expression=AK058734;TENOR=Os02t0232400-02;KEGG=Os02t0232400-02 (EC:2.3.3.1)
Chr02	irgsp1_rep	five_prime_UTR	7493302	7493303	.	+	.	Parent=Os02t0232400-02
Chr02	irgsp1_rep	CDS	7493304	7493413	.	+	0	Parent=Os02t0232400-02
Chr02	irgsp1_rep	CDS	7493544	7493663	.	+	1	Parent=Os02t0232400-02
Chr02	irgsp1_rep	CDS	7493733	7493808	.	+	1	Parent=Os02t0232400-02
Chr02	irgsp1_rep	CDS	7494154	7494227	.	+	0	Parent=Os02t0232400-02
Chr02	irgsp1_rep	CDS	7494374	7494494	.	+	1	Parent=Os02t0232400-02
Chr02	irgsp1_rep	CDS	7496459	7496556	.	+	0	Parent=Os02t0232400-02
Chr02	irgsp1_rep	CDS	7496635	7496758	.	+	1	Parent=Os02t0232400-02
Chr02	irgsp1_rep	CDS	7497273	7497404	.	+	0	Parent=Os02t0232400-02
Chr02	irgsp1_rep	three_prime_UTR	7497405	7497649	.	+	.	Parent=Os02t0232400-02
Chr02	irgsp1_rep	mRNA	7501363	7513592	.	+	.	ID=Os02t0232500-01;Name=Os02t0232500-01;Locus_id=Os02g0232500;Note=Similar to Receptor-like serine/threonine kinase.;Transcript_evidence=AK065815 (DDBJ%2C Best hit);ORF_evidence=B9F4F7 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Leucine-rich repeat (IPR001611),Protein kinase-like domain (IPR011009),Malectin (IPR021720);NIAS_FLcDNA=J013041I15;Expression=AK065815;TENOR=Os02t0232500-01;KEGG=Os02t0232500-01
Chr02	irgsp1_rep	five_prime_UTR	7501363	7501546	.	+	.	Parent=Os02t0232500-01
Chr02	irgsp1_rep	CDS	7501547	7501679	.	+	0	Parent=Os02t0232500-01
Chr02	irgsp1_rep	CDS	7503921	7504122	.	+	2	Parent=Os02t0232500-01
Chr02	irgsp1_rep	CDS	7504256	7504327	.	+	1	Parent=Os02t0232500-01
Chr02	irgsp1_rep	CDS	7504406	7504474	.	+	1	Parent=Os02t0232500-01
Chr02	irgsp1_rep	CDS	7504555	7504626	.	+	1	Parent=Os02t0232500-01
Chr02	irgsp1_rep	CDS	7505112	7505183	.	+	1	Parent=Os02t0232500-01
Chr02	irgsp1_rep	CDS	7505611	7505682	.	+	1	Parent=Os02t0232500-01
Chr02	irgsp1_rep	CDS	7505763	7505834	.	+	1	Parent=Os02t0232500-01
Chr02	irgsp1_rep	CDS	7505945	7506016	.	+	1	Parent=Os02t0232500-01
Chr02	irgsp1_rep	CDS	7506109	7506180	.	+	1	Parent=Os02t0232500-01
Chr02	irgsp1_rep	CDS	7506588	7506659	.	+	1	Parent=Os02t0232500-01
Chr02	irgsp1_rep	CDS	7507115	7507192	.	+	1	Parent=Os02t0232500-01
Chr02	irgsp1_rep	CDS	7507337	7507414	.	+	1	Parent=Os02t0232500-01
Chr02	irgsp1_rep	CDS	7507570	7507629	.	+	1	Parent=Os02t0232500-01
Chr02	irgsp1_rep	CDS	7507710	7507748	.	+	1	Parent=Os02t0232500-01
Chr02	irgsp1_rep	CDS	7507849	7507898	.	+	1	Parent=Os02t0232500-01
Chr02	irgsp1_rep	CDS	7508010	7508380	.	+	2	Parent=Os02t0232500-01
Chr02	irgsp1_rep	CDS	7509367	7509562	.	+	0	Parent=Os02t0232500-01
Chr02	irgsp1_rep	CDS	7509705	7509836	.	+	2	Parent=Os02t0232500-01
Chr02	irgsp1_rep	CDS	7510594	7510748	.	+	2	Parent=Os02t0232500-01
Chr02	irgsp1_rep	CDS	7511548	7511568	.	+	0	Parent=Os02t0232500-01
Chr02	irgsp1_rep	three_prime_UTR	7511569	7511782	.	+	.	Parent=Os02t0232500-01
Chr02	irgsp1_rep	three_prime_UTR	7511895	7512045	.	+	.	Parent=Os02t0232500-01
Chr02	irgsp1_rep	three_prime_UTR	7512713	7513592	.	+	.	Parent=Os02t0232500-01
Chr02	irgsp1_rep	mRNA	7501415	7512040	.	+	.	ID=Os02t0232500-02;Name=Os02t0232500-02;Locus_id=Os02g0232500;Note=Similar to Receptor-like serine/threonine kinase.;Transcript_evidence=AK103384 (DDBJ%2C Best hit);ORF_evidence=B9F4F7 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Leucine-rich repeat (IPR001611),Protein kinase-like domain (IPR011009),Malectin (IPR021720);NIAS_FLcDNA=J033127G17;Expression=AK103384;TENOR=Os02t0232500-02;KEGG=Os02t0232500-02
Chr02	irgsp1_rep	five_prime_UTR	7501415	7501546	.	+	.	Parent=Os02t0232500-02
Chr02	irgsp1_rep	CDS	7501547	7501679	.	+	0	Parent=Os02t0232500-02
Chr02	irgsp1_rep	CDS	7503921	7504122	.	+	2	Parent=Os02t0232500-02
Chr02	irgsp1_rep	CDS	7504256	7504327	.	+	1	Parent=Os02t0232500-02
Chr02	irgsp1_rep	CDS	7504406	7504474	.	+	1	Parent=Os02t0232500-02
Chr02	irgsp1_rep	CDS	7504555	7504626	.	+	1	Parent=Os02t0232500-02
Chr02	irgsp1_rep	CDS	7505112	7505183	.	+	1	Parent=Os02t0232500-02
Chr02	irgsp1_rep	CDS	7505611	7505682	.	+	1	Parent=Os02t0232500-02
Chr02	irgsp1_rep	CDS	7505763	7505834	.	+	1	Parent=Os02t0232500-02
Chr02	irgsp1_rep	CDS	7505945	7506016	.	+	1	Parent=Os02t0232500-02
Chr02	irgsp1_rep	CDS	7506109	7506180	.	+	1	Parent=Os02t0232500-02
Chr02	irgsp1_rep	CDS	7506588	7506659	.	+	1	Parent=Os02t0232500-02
Chr02	irgsp1_rep	CDS	7507115	7507192	.	+	1	Parent=Os02t0232500-02
Chr02	irgsp1_rep	CDS	7507337	7507414	.	+	1	Parent=Os02t0232500-02
Chr02	irgsp1_rep	CDS	7507570	7507629	.	+	1	Parent=Os02t0232500-02
Chr02	irgsp1_rep	CDS	7507710	7507748	.	+	1	Parent=Os02t0232500-02
Chr02	irgsp1_rep	CDS	7507849	7507898	.	+	1	Parent=Os02t0232500-02
Chr02	irgsp1_rep	CDS	7508010	7508380	.	+	2	Parent=Os02t0232500-02
Chr02	irgsp1_rep	CDS	7509367	7509562	.	+	0	Parent=Os02t0232500-02
Chr02	irgsp1_rep	CDS	7509705	7509836	.	+	2	Parent=Os02t0232500-02
Chr02	irgsp1_rep	CDS	7510594	7510748	.	+	2	Parent=Os02t0232500-02
Chr02	irgsp1_rep	CDS	7511548	7511568	.	+	0	Parent=Os02t0232500-02
Chr02	irgsp1_rep	three_prime_UTR	7511569	7511782	.	+	.	Parent=Os02t0232500-02
Chr02	irgsp1_rep	three_prime_UTR	7511895	7512040	.	+	.	Parent=Os02t0232500-02
Chr02	irgsp1_rep	mRNA	7516238	7519231	.	-	.	ID=Os02t0232900-01;Name=Os02t0232900-01;Locus_id=Os02g0232900;RAP-DB Gene Symbol Synonym(s)=OsNIP1%3B1;RAP-DB Gene Name Synonym(s)=Nodulin26-like Intrinsic Protein 1%3B1;CGSNL Gene Symbol=NIP1%3B1;CGSNL Gene Name=NOD26 LIKE INTRINSIC PROTEIN 1%3B1;Oryzabase Gene Symbol Synonym(s)=OsNIP1%3B1%2C NIP1-1%2C rMIP1%2C MIP1%2C OsNIP1.1%2C NIP1.1;Oryzabase Gene Name Synonym(s)=Aquaporin NIP1-1%2C NOD26-like intrinsic protein 1-1%2C rice Mip 1%2C major intrinsic protein 1%2C Nodulin 26;Note=A member of the Nodulin26-like Intrinsic Protein (NIP) family%2C Arsenite transporter;Transcript_evidence=AK068806;ORF_evidence=Q40746;GO=Biological Process: transmembrane transport (GO:0055085),Molecular Function: channel activity (GO:0015267),Cellular Component: membrane (GO:0016020);InterPro=Aquaporin-like (IPR023271),Major intrinsic protein (IPR000425),Major intrinsic protein%2C conserved site (IPR022357);NIAS_FLcDNA=J013160F10;Manual Curation=May 18%2C 2018;Literature_PMID=29749629;Oryzabase=8517;Expression=AK068806;TENOR=Os02t0232900-01;KEGG=Os02t0232900-01;Subcellular location=plasma membrane (GO:0005886)
Chr02	irgsp1_rep	five_prime_UTR	7519137	7519231	.	-	.	Parent=Os02t0232900-01
Chr02	irgsp1_rep	CDS	7518990	7519136	.	-	0	Parent=Os02t0232900-01
Chr02	irgsp1_rep	CDS	7518473	7518895	.	-	0	Parent=Os02t0232900-01
Chr02	irgsp1_rep	CDS	7518228	7518289	.	-	0	Parent=Os02t0232900-01
Chr02	irgsp1_rep	CDS	7516642	7516864	.	-	1	Parent=Os02t0232900-01
Chr02	irgsp1_rep	three_prime_UTR	7516238	7516641	.	-	.	Parent=Os02t0232900-01
Chr02	irgsp1_rep	mRNA	7542597	7547070	.	+	.	ID=Os02t0233100-01;Name=Os02t0233100-01;Locus_id=Os02g0233100;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK121278 (DDBJ%2C Best hit);ORF_evidence=NP_001149165.1 (RefSeq);GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C FYVE-type (IPR000306),Ysc84 actin-binding domain (IPR007461),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C FYVE-related (IPR017455);NIAS_FLcDNA=J023108C10;Expression=AK121278;TENOR=Os02t0233100-01;KEGG=Os02t0233100-01
Chr02	irgsp1_rep	five_prime_UTR	7542597	7542730	.	+	.	Parent=Os02t0233100-01
Chr02	irgsp1_rep	CDS	7542731	7542877	.	+	0	Parent=Os02t0233100-01
Chr02	irgsp1_rep	CDS	7543307	7544179	.	+	0	Parent=Os02t0233100-01
Chr02	irgsp1_rep	CDS	7545001	7545201	.	+	0	Parent=Os02t0233100-01
Chr02	irgsp1_rep	CDS	7545300	7545495	.	+	0	Parent=Os02t0233100-01
Chr02	irgsp1_rep	CDS	7546632	7546822	.	+	2	Parent=Os02t0233100-01
Chr02	irgsp1_rep	three_prime_UTR	7546823	7547070	.	+	.	Parent=Os02t0233100-01
Chr02	irgsp1_rep	mRNA	7548547	7551644	.	-	.	ID=Os02t0233200-00;Name=Os02t0233200-00;Locus_id=Os02g0233200;CGSNL Gene Symbol=BZR4;CGSNL Gene Name=BRASSINAZOLE RESISTANT 4;Oryzabase Gene Symbol Synonym(s)=OsBZR4;Oryzabase Gene Name Synonym(s)=BRASSINAZOLE-RESISTANT4;Note=Similar to Brassinazole-resistant 1 protein.;Transcript_evidence=BT062668 (DDBJ);ORF_evidence=NP_001136786.1 (RefSeq);InterPro=BZR1%2C transcriptional repressor (IPR008540);Oryzabase=22437;TENOR=Os02t0233200-00;KEGG=Os02t0233200-00
Chr02	irgsp1_rep	CDS	7551420	7551644	.	-	0	Parent=Os02t0233200-00
Chr02	irgsp1_rep	CDS	7548571	7549401	.	-	0	Parent=Os02t0233200-00
Chr02	irgsp1_rep	three_prime_UTR	7548547	7548570	.	-	.	Parent=Os02t0233200-00
Chr02	irgsp1_rep	mRNA	7567042	7567476	.	-	.	ID=Os02t0233333-00;Name=Os02t0233333-00;Locus_id=Os02g0233333;Note=Similar to predicted protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6EUE9 (UniProt);InterPro=Uncharacterised protein family Ycf20 (IPR007572);TENOR=Os02t0233333-00;KEGG=Os02t0233333-00
Chr02	irgsp1_rep	CDS	7567042	7567476	.	-	0	Parent=Os02t0233333-00
Chr02	irgsp1_rep	mRNA	7574578	7577991	.	-	.	ID=Os02t0233566-01;Name=Os02t0233566-01;Locus_id=Os02g0233566;Note=Conserved hypothetical protein.;Transcript_evidence=AK288742 (DDBJ%2C Best hit);ORF_evidence=Q69WH9 (UniProt);NIAS_FLcDNA=J090064E14;TENOR=Os02t0233566-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	7575830	7577991	.	-	.	Parent=Os02t0233566-01
Chr02	irgsp1_rep	CDS	7575557	7575829	.	-	0	Parent=Os02t0233566-01
Chr02	irgsp1_rep	three_prime_UTR	7574578	7575556	.	-	.	Parent=Os02t0233566-01
Chr02	irgsp1_rep	mRNA	7588596	7589065	.	-	.	ID=Os02t0234051-00;Name=Os02t0234051-00;Locus_id=Os02g0234051;Note=EF-hand-like domain domain containing protein.;Transcript_evidence=DQ245741 (DDBJ);ORF_evidence=A2X2R4 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand-like domain (IPR011992),EF-hand (IPR018248),EF-HAND 2 (IPR018249);TENOR=Os02t0234051-00
Chr02	irgsp1_rep	CDS	7588877	7589065	.	-	0	Parent=Os02t0234051-00
Chr02	irgsp1_rep	three_prime_UTR	7588596	7588876	.	-	.	Parent=Os02t0234051-00
Chr02	irgsp1_rep	mRNA	7594952	7599868	.	+	.	ID=Os02t0234200-01;Name=Os02t0234200-01;Locus_id=Os02g0234200;RAP-DB Gene Symbol Synonym(s)=FUWA%2C OsFUWA;CGSNL Gene Symbol=FUWA;Oryzabase Gene Symbol Synonym(s)=OsFUWA;Note=NHL domain-containing protein%2C Determination of panicle architecture%2C grain shape and grain weight;Transcript_evidence=KF736096,AK121405;ORF_evidence=Q6EUK9;GO=Molecular Function: protein binding (GO:0005515);InterPro=Six-bladed beta-propeller%2C TolB-like (IPR011042),NHL repeat (IPR001258),NHL repeat%2C subgroup (IPR013017);NIAS_FLcDNA=J023132G13;Manual Curation=August 24%2C 2015;Literature_PMID=26043067;Oryzabase=19894;Expression=AK121405;TENOR=Os02t0234200-01;KEGG=Os02t0234200-01
Chr02	irgsp1_rep	five_prime_UTR	7594952	7595096	.	+	.	Parent=Os02t0234200-01
Chr02	irgsp1_rep	CDS	7595097	7595181	.	+	0	Parent=Os02t0234200-01
Chr02	irgsp1_rep	CDS	7595309	7595413	.	+	2	Parent=Os02t0234200-01
Chr02	irgsp1_rep	CDS	7595962	7596138	.	+	2	Parent=Os02t0234200-01
Chr02	irgsp1_rep	CDS	7596616	7596786	.	+	2	Parent=Os02t0234200-01
Chr02	irgsp1_rep	CDS	7597098	7597307	.	+	2	Parent=Os02t0234200-01
Chr02	irgsp1_rep	CDS	7598416	7598501	.	+	2	Parent=Os02t0234200-01
Chr02	irgsp1_rep	CDS	7598761	7599408	.	+	0	Parent=Os02t0234200-01
Chr02	irgsp1_rep	three_prime_UTR	7599409	7599868	.	+	.	Parent=Os02t0234200-01
Chr02	irgsp1_rep	mRNA	7612541	7615346	.	+	.	ID=Os02t0234300-01;Name=Os02t0234300-01;Locus_id=Os02g0234300;RAP-DB Gene Symbol Synonym(s)=OsPUB4;RAP-DB Gene Name Synonym(s)=plant U-box 4%2C plant U-box-containing protein 4%2C U-box protein 4;Oryzabase Gene Symbol Synonym(s)=OsPUB4;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 4%2C U-box protein 4;Note=U-Box E3 ubiquitin ligase%2C Diurnal rhythm regulation%2C Abiotic stress response;Transcript_evidence=AK062592 (truncated),Inferred from literature;ORF_evidence=Q6EUK7;GO=Biological Process: protein ubiquitination (GO:0016567),Molecular Function: ubiquitin-protein transferase activity (GO:0004842),Molecular Function: protein binding (GO:0005515);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),U box domain (IPR003613),Armadillo (IPR000225);NIAS_FLcDNA=001-100-H03 (truncated);Manual Curation=August 24%2C 2020;Literature_PMID=32825403;Oryzabase=17797;Expression=AK062592;TENOR=Os02t0234300-01;KEGG=Os02t0234300-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	7612541	7612821	.	+	.	Parent=Os02t0234300-01
Chr02	irgsp1_rep	CDS	7612822	7615008	.	+	0	Parent=Os02t0234300-01
Chr02	irgsp1_rep	three_prime_UTR	7615009	7615346	.	+	.	Parent=Os02t0234300-01
Chr02	irgsp1_rep	mRNA	7618027	7619445	.	-	.	ID=Os02t0234400-01;Name=Os02t0234400-01;Locus_id=Os02g0234400;Note=Hypothetical protein.;Transcript_evidence=AK064586 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-112-F12;Expression=AK064586;TENOR=Os02t0234400-01;KEGG=Os02t0234400-01
Chr02	irgsp1_rep	five_prime_UTR	7619145	7619445	.	-	.	Parent=Os02t0234400-01
Chr02	irgsp1_rep	CDS	7618890	7619144	.	-	0	Parent=Os02t0234400-01
Chr02	irgsp1_rep	three_prime_UTR	7618027	7618889	.	-	.	Parent=Os02t0234400-01
Chr02	irgsp1_rep	mRNA	7618738	7621248	.	+	.	ID=Os02t0234450-00;Name=Os02t0234450-00;Locus_id=Os02g0234450;Note=Hypothetical conserved gene.;Transcript_evidence=EU940971 (DDBJ);ORF_evidence=Q01MD3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os02t0234450-00;KEGG=Os02t0234450-00
Chr02	irgsp1_rep	CDS	7618738	7621248	.	+	0	Parent=Os02t0234450-00
Chr02	irgsp1_rep	mRNA	7621905	7627258	.	+	.	ID=Os02t0234500-01;Name=Os02t0234500-01;Locus_id=Os02g0234500;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK068001 (DDBJ%2C Best hit);ORF_evidence=Q8S4X1 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NmrA-like (IPR008030),Galactose-binding domain-like (IPR008979),NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (IPR013857),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013128H21;Expression=AK068001;TENOR=Os02t0234500-01;KEGG=Os02t0234500-01
Chr02	irgsp1_rep	five_prime_UTR	7621905	7622011	.	+	.	Parent=Os02t0234500-01
Chr02	irgsp1_rep	CDS	7622012	7622062	.	+	0	Parent=Os02t0234500-01
Chr02	irgsp1_rep	CDS	7622756	7622971	.	+	0	Parent=Os02t0234500-01
Chr02	irgsp1_rep	CDS	7623067	7623228	.	+	0	Parent=Os02t0234500-01
Chr02	irgsp1_rep	CDS	7623366	7623416	.	+	0	Parent=Os02t0234500-01
Chr02	irgsp1_rep	CDS	7623836	7623970	.	+	0	Parent=Os02t0234500-01
Chr02	irgsp1_rep	CDS	7624061	7624084	.	+	0	Parent=Os02t0234500-01
Chr02	irgsp1_rep	CDS	7624241	7624352	.	+	0	Parent=Os02t0234500-01
Chr02	irgsp1_rep	CDS	7624676	7624801	.	+	2	Parent=Os02t0234500-01
Chr02	irgsp1_rep	CDS	7624904	7624953	.	+	2	Parent=Os02t0234500-01
Chr02	irgsp1_rep	CDS	7625239	7625397	.	+	0	Parent=Os02t0234500-01
Chr02	irgsp1_rep	CDS	7625482	7625577	.	+	0	Parent=Os02t0234500-01
Chr02	irgsp1_rep	CDS	7625651	7625766	.	+	0	Parent=Os02t0234500-01
Chr02	irgsp1_rep	CDS	7625885	7626008	.	+	1	Parent=Os02t0234500-01
Chr02	irgsp1_rep	CDS	7626093	7626206	.	+	0	Parent=Os02t0234500-01
Chr02	irgsp1_rep	CDS	7626323	7626403	.	+	0	Parent=Os02t0234500-01
Chr02	irgsp1_rep	CDS	7626516	7626662	.	+	0	Parent=Os02t0234500-01
Chr02	irgsp1_rep	three_prime_UTR	7626663	7626712	.	+	.	Parent=Os02t0234500-01
Chr02	irgsp1_rep	three_prime_UTR	7626901	7627258	.	+	.	Parent=Os02t0234500-01
Chr02	irgsp1_rep	mRNA	7623044	7627260	.	+	.	ID=Os02t0234500-02;Name=Os02t0234500-02;Locus_id=Os02g0234500;Note=Similar to predicted protein.;Transcript_evidence=AK071487 (DDBJ%2C Best hit);ORF_evidence=Q8S4X1 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NmrA-like (IPR008030),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023099F01;Expression=AK071487;TENOR=Os02t0234500-02;KEGG=Os02t0234500-02
Chr02	irgsp1_rep	five_prime_UTR	7623044	7623066	.	+	.	Parent=Os02t0234500-02
Chr02	irgsp1_rep	CDS	7623067	7623228	.	+	0	Parent=Os02t0234500-02
Chr02	irgsp1_rep	CDS	7623366	7623416	.	+	0	Parent=Os02t0234500-02
Chr02	irgsp1_rep	CDS	7623836	7623970	.	+	0	Parent=Os02t0234500-02
Chr02	irgsp1_rep	CDS	7624061	7624123	.	+	0	Parent=Os02t0234500-02
Chr02	irgsp1_rep	three_prime_UTR	7624124	7624352	.	+	.	Parent=Os02t0234500-02
Chr02	irgsp1_rep	three_prime_UTR	7624676	7624801	.	+	.	Parent=Os02t0234500-02
Chr02	irgsp1_rep	three_prime_UTR	7624904	7624953	.	+	.	Parent=Os02t0234500-02
Chr02	irgsp1_rep	three_prime_UTR	7625239	7625397	.	+	.	Parent=Os02t0234500-02
Chr02	irgsp1_rep	three_prime_UTR	7625482	7625577	.	+	.	Parent=Os02t0234500-02
Chr02	irgsp1_rep	three_prime_UTR	7625651	7625766	.	+	.	Parent=Os02t0234500-02
Chr02	irgsp1_rep	three_prime_UTR	7625885	7626008	.	+	.	Parent=Os02t0234500-02
Chr02	irgsp1_rep	three_prime_UTR	7626093	7626206	.	+	.	Parent=Os02t0234500-02
Chr02	irgsp1_rep	three_prime_UTR	7626323	7626403	.	+	.	Parent=Os02t0234500-02
Chr02	irgsp1_rep	three_prime_UTR	7626516	7626712	.	+	.	Parent=Os02t0234500-02
Chr02	irgsp1_rep	three_prime_UTR	7626797	7627260	.	+	.	Parent=Os02t0234500-02
Chr02	irgsp1_rep	mRNA	7624302	7627247	.	+	.	ID=Os02t0234500-03;Name=Os02t0234500-03;Locus_id=Os02g0234500;Note=Similar to UOS1.;Transcript_evidence=AK059065 (DDBJ%2C Best hit);ORF_evidence=Q8S4X1 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=Galactose-binding domain-like (IPR008979),NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (IPR013857),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-021-G09;Expression=AK059065;TENOR=Os02t0234500-03;KEGG=Os02t0234500-03
Chr02	irgsp1_rep	five_prime_UTR	7624302	7624303	.	+	.	Parent=Os02t0234500-03
Chr02	irgsp1_rep	CDS	7624304	7624352	.	+	0	Parent=Os02t0234500-03
Chr02	irgsp1_rep	CDS	7624676	7624801	.	+	2	Parent=Os02t0234500-03
Chr02	irgsp1_rep	CDS	7624904	7624953	.	+	2	Parent=Os02t0234500-03
Chr02	irgsp1_rep	CDS	7625239	7625397	.	+	0	Parent=Os02t0234500-03
Chr02	irgsp1_rep	CDS	7625482	7625577	.	+	0	Parent=Os02t0234500-03
Chr02	irgsp1_rep	CDS	7625651	7625766	.	+	0	Parent=Os02t0234500-03
Chr02	irgsp1_rep	CDS	7625885	7626008	.	+	1	Parent=Os02t0234500-03
Chr02	irgsp1_rep	CDS	7626093	7626206	.	+	0	Parent=Os02t0234500-03
Chr02	irgsp1_rep	CDS	7626323	7626403	.	+	0	Parent=Os02t0234500-03
Chr02	irgsp1_rep	CDS	7626516	7626662	.	+	0	Parent=Os02t0234500-03
Chr02	irgsp1_rep	three_prime_UTR	7626663	7626712	.	+	.	Parent=Os02t0234500-03
Chr02	irgsp1_rep	three_prime_UTR	7626797	7627247	.	+	.	Parent=Os02t0234500-03
Chr02	irgsp1_rep	mRNA	7627395	7628246	.	-	.	ID=Os02t0234700-01;Name=Os02t0234700-01;Locus_id=Os02g0234700;Note=Conserved hypothetical protein.;Transcript_evidence=AK062439 (DDBJ%2C Best hit);ORF_evidence=A2X2R8 (UniProt);NIAS_FLcDNA=001-103-A10;Expression=AK062439;TENOR=Os02t0234700-01;KEGG=Os02t0234700-01
Chr02	irgsp1_rep	five_prime_UTR	7628171	7628246	.	-	.	Parent=Os02t0234700-01
Chr02	irgsp1_rep	CDS	7627895	7628170	.	-	0	Parent=Os02t0234700-01
Chr02	irgsp1_rep	CDS	7627748	7627765	.	-	0	Parent=Os02t0234700-01
Chr02	irgsp1_rep	three_prime_UTR	7627395	7627747	.	-	.	Parent=Os02t0234700-01
Chr02	irgsp1_rep	mRNA	7627889	7628252	.	+	.	ID=Os02t0234750-00;Name=Os02t0234750-00;Locus_id=Os02g0234750;Note=Hypothetical gene.;Transcript_evidence=EU950700 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0234750-00;KEGG=Os02t0234750-00
Chr02	irgsp1_rep	CDS	7627889	7628152	.	+	0	Parent=Os02t0234750-00
Chr02	irgsp1_rep	three_prime_UTR	7628153	7628252	.	+	.	Parent=Os02t0234750-00
Chr02	irgsp1_rep	mRNA	7630948	7635189	.	-	.	ID=Os02t0234800-01;Name=Os02t0234800-01;Locus_id=Os02g0234800;Note=Similar to U2 small nuclear ribonucleoprotein A' (U2 snRNP-A').;Transcript_evidence=AK070679 (DDBJ%2C Best hit);ORF_evidence=B6TS72 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=J023062O22;Expression=AK070679;TENOR=Os02t0234800-01;KEGG=Os02t0234800-01
Chr02	irgsp1_rep	five_prime_UTR	7634968	7635189	.	-	.	Parent=Os02t0234800-01
Chr02	irgsp1_rep	CDS	7634886	7634967	.	-	0	Parent=Os02t0234800-01
Chr02	irgsp1_rep	CDS	7634726	7634766	.	-	2	Parent=Os02t0234800-01
Chr02	irgsp1_rep	CDS	7633077	7633206	.	-	0	Parent=Os02t0234800-01
Chr02	irgsp1_rep	CDS	7632782	7632987	.	-	2	Parent=Os02t0234800-01
Chr02	irgsp1_rep	CDS	7631855	7632028	.	-	0	Parent=Os02t0234800-01
Chr02	irgsp1_rep	CDS	7631541	7631591	.	-	0	Parent=Os02t0234800-01
Chr02	irgsp1_rep	CDS	7631283	7631447	.	-	0	Parent=Os02t0234800-01
Chr02	irgsp1_rep	CDS	7631182	7631187	.	-	0	Parent=Os02t0234800-01
Chr02	irgsp1_rep	three_prime_UTR	7630948	7631181	.	-	.	Parent=Os02t0234800-01
Chr02	irgsp1_rep	mRNA	7643726	7646118	.	+	.	ID=Os02t0235000-01;Name=Os02t0235000-01;Locus_id=Os02g0235000;Note=Similar to Actin-related protein 2/3 complex subunit 3.;Transcript_evidence=AK242666 (DDBJ%2C Best hit);ORF_evidence=B6U3I7 (UniProt);GO=Biological Process: regulation of actin filament polymerization (GO:0030833),Cellular Component: cytoskeleton (GO:0005856);InterPro=ARP2/3 complex%2C p21-Arc subunit (IPR007204);NIAS_FLcDNA=J090029G01;TENOR=Os02t0235000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	7643726	7643787	.	+	.	Parent=Os02t0235000-01
Chr02	irgsp1_rep	CDS	7643788	7643844	.	+	0	Parent=Os02t0235000-01
Chr02	irgsp1_rep	CDS	7644305	7644413	.	+	0	Parent=Os02t0235000-01
Chr02	irgsp1_rep	CDS	7644517	7644794	.	+	2	Parent=Os02t0235000-01
Chr02	irgsp1_rep	three_prime_UTR	7644795	7646118	.	+	.	Parent=Os02t0235000-01
Chr02	irgsp1_rep	mRNA	7650617	7650977	.	+	.	ID=Os02t0235050-00;Name=Os02t0235050-00;Locus_id=Os02g0235050;Note=Non-protein coding transcript.;Transcript_evidence=EU949135 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0235050-00
Chr02	irgsp1_rep	exon	7650617	7650977	.	+	.	Parent=Os02t0235050-00
Chr02	irgsp1_rep	mRNA	7654190	7655639	.	-	.	ID=Os02t0235101-01;Name=Os02t0235101-01;Locus_id=Os02g0235101;Note=Hypothetical protein.;Transcript_evidence=AK103095 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033118L19;TENOR=Os02t0235101-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	7655638	7655639	.	-	.	Parent=Os02t0235101-01
Chr02	irgsp1_rep	CDS	7655203	7655637	.	-	0	Parent=Os02t0235101-01
Chr02	irgsp1_rep	three_prime_UTR	7654190	7655202	.	-	.	Parent=Os02t0235101-01
Chr02	irgsp1_rep	mRNA	7676838	7687402	.	+	.	ID=Os02t0235600-01;Name=Os02t0235600-01;Locus_id=Os02g0235600;Note=Similar to 60S ribosomal protein L11-2 (L16). Splice isoform 2.;Transcript_evidence=AK120417 (DDBJ%2C Best hit);ORF_evidence=Q0DK10 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L5 (IPR002132),Ribosomal protein L5%2C conserved site (IPR020929),Ribosomal protein L5 domain (IPR022803);NIAS_FLcDNA=J013093C14;Expression=AK120417;TENOR=Os02t0235600-01;KEGG=Os02t0235600-01
Chr02	irgsp1_rep	five_prime_UTR	7676838	7676913	.	+	.	Parent=Os02t0235600-01
Chr02	irgsp1_rep	CDS	7676914	7676916	.	+	0	Parent=Os02t0235600-01
Chr02	irgsp1_rep	CDS	7677011	7677118	.	+	0	Parent=Os02t0235600-01
Chr02	irgsp1_rep	CDS	7677207	7677249	.	+	0	Parent=Os02t0235600-01
Chr02	irgsp1_rep	CDS	7677349	7677544	.	+	2	Parent=Os02t0235600-01
Chr02	irgsp1_rep	CDS	7686986	7687184	.	+	1	Parent=Os02t0235600-01
Chr02	irgsp1_rep	three_prime_UTR	7687185	7687402	.	+	.	Parent=Os02t0235600-01
Chr02	irgsp1_rep	mRNA	7677010	7687373	.	-	.	ID=Os02t0235701-00;Name=Os02t0235701-00;Locus_id=Os02g0235701;Note=Conserved hypothetical protein.;Transcript_evidence=BT016915 (DDBJ);ORF_evidence=XP_003078349.1 (RefSeq);TENOR=Os02t0235701-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	7687135	7687373	.	-	.	Parent=Os02t0235701-00
Chr02	irgsp1_rep	CDS	7687001	7687134	.	-	0	Parent=Os02t0235701-00
Chr02	irgsp1_rep	CDS	7677319	7677561	.	-	1	Parent=Os02t0235701-00
Chr02	irgsp1_rep	CDS	7677101	7677131	.	-	1	Parent=Os02t0235701-00
Chr02	irgsp1_rep	three_prime_UTR	7677010	7677100	.	-	.	Parent=Os02t0235701-00
Chr02	irgsp1_rep	mRNA	7690292	7691985	.	-	.	ID=Os02t0235802-00;Name=Os02t0235802-00;Locus_id=Os02g0235802;Note=Hypothetical protein.;Transcript_evidence=BT055691 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0235802-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	7691725	7691985	.	-	.	Parent=Os02t0235802-00
Chr02	irgsp1_rep	five_prime_UTR	7691516	7691657	.	-	.	Parent=Os02t0235802-00
Chr02	irgsp1_rep	five_prime_UTR	7691253	7691358	.	-	.	Parent=Os02t0235802-00
Chr02	irgsp1_rep	CDS	7690815	7691252	.	-	0	Parent=Os02t0235802-00
Chr02	irgsp1_rep	three_prime_UTR	7690292	7690814	.	-	.	Parent=Os02t0235802-00
Chr02	irgsp1_rep	mRNA	7690242	7692086	.	+	.	ID=Os02t0235900-01;Name=Os02t0235900-01;Locus_id=Os02g0235900;Note=Oxygen oxidoreductase covalent FAD-binding site domain containing protein.;Transcript_evidence=AK241267 (DDBJ%2C Best hit);ORF_evidence=A2X2S4 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Oxygen oxidoreductase covalent FAD-binding site (IPR006093),FAD linked oxidase%2C N-terminal (IPR006094),Berberine/berberine-like (IPR012951),FAD-binding%2C type 2 (IPR016166),FAD-binding%2C type 2%2C subdomain 1 (IPR016167),FAD-linked oxidase%2C FAD-binding%2C subdomain 2 (IPR016168);NIAS_FLcDNA=J065132E09;TENOR=Os02t0235900-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	7690242	7690302	.	+	.	Parent=Os02t0235900-01
Chr02	irgsp1_rep	CDS	7690303	7692006	.	+	0	Parent=Os02t0235900-01
Chr02	irgsp1_rep	three_prime_UTR	7692007	7692086	.	+	.	Parent=Os02t0235900-01
Chr02	irgsp1_rep	mRNA	7706619	7710902	.	+	.	ID=Os02t0236000-01;Name=Os02t0236000-01;Locus_id=Os02g0236000;Oryzabase Gene Name Synonym(s)=Aspartate aminotransferase;Note=Similar to Aspartate aminotransferase (EC 2.6.1.1) (Fragment).;Transcript_evidence=AK070560 (DDBJ%2C Best hit);ORF_evidence=B8AEL7 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transaminase activity (GO:0008483),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aspartate/other aminotransferase (IPR000796),Aminotransferases%2C class-I%2C pyridoxal-phosphate-binding site (IPR004838),Aminotransferase%2C class I/classII (IPR004839),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J023062F07;Oryzabase=16689;Expression=AK070560;TENOR=Os02t0236000-01;KEGG=Os02t0236000-01 (EC:2.6.1.1)
Chr02	irgsp1_rep	five_prime_UTR	7706619	7706768	.	+	.	Parent=Os02t0236000-01
Chr02	irgsp1_rep	CDS	7706769	7706966	.	+	0	Parent=Os02t0236000-01
Chr02	irgsp1_rep	CDS	7707097	7707182	.	+	0	Parent=Os02t0236000-01
Chr02	irgsp1_rep	CDS	7707747	7707953	.	+	1	Parent=Os02t0236000-01
Chr02	irgsp1_rep	CDS	7708170	7708275	.	+	1	Parent=Os02t0236000-01
Chr02	irgsp1_rep	CDS	7708537	7708641	.	+	0	Parent=Os02t0236000-01
Chr02	irgsp1_rep	CDS	7708724	7708896	.	+	0	Parent=Os02t0236000-01
Chr02	irgsp1_rep	CDS	7709336	7709495	.	+	1	Parent=Os02t0236000-01
Chr02	irgsp1_rep	CDS	7709584	7709679	.	+	0	Parent=Os02t0236000-01
Chr02	irgsp1_rep	CDS	7710335	7710429	.	+	0	Parent=Os02t0236000-01
Chr02	irgsp1_rep	CDS	7710516	7710588	.	+	1	Parent=Os02t0236000-01
Chr02	irgsp1_rep	three_prime_UTR	7710589	7710902	.	+	.	Parent=Os02t0236000-01
Chr02	irgsp1_rep	mRNA	7711097	7715739	.	-	.	ID=Os02t0236100-01;Name=Os02t0236100-01;Locus_id=Os02g0236100;RAP-DB Gene Symbol Synonym(s)=Docs1%2C OsSERL4%2C OsBAK1-9;RAP-DB Gene Name Synonym(s)=defective in outer cell layer specification 1%2C SERK-like gene 4%2C bri1-associated receptor kinase 1 (BAK1) homologue 9;Oryzabase Gene Symbol Synonym(s)=OsSERL4%2C OsBAK1-9%2C Docs1;Oryzabase Gene Name Synonym(s)=SERK-like gene 4%2C bri1-associated receptor kinase 1 (BAK1) homologue 9%2C defective in outer cell layer specification 1;Note=Leucine-rich repeat receptor-like kinase%2C Specification of root outer cell layers;Transcript_evidence=AB625452 (Koshihikari),AK120541;ORF_evidence=Q6EUS5;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Concanavalin A-like lectin/glucanase domain (IPR013320),Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine/threonine/dual specificity protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat (IPR001611),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J013129G20;Manual Curation=March 18%2C 2015;Literature_PMID=22014207;Oryzabase=13027;Expression=AK120541;TENOR=Os02t0236100-01;KEGG=Os02t0236100-01
Chr02	irgsp1_rep	five_prime_UTR	7715582	7715739	.	-	.	Parent=Os02t0236100-01
Chr02	irgsp1_rep	CDS	7715473	7715581	.	-	0	Parent=Os02t0236100-01
Chr02	irgsp1_rep	CDS	7715251	7715383	.	-	2	Parent=Os02t0236100-01
Chr02	irgsp1_rep	CDS	7715066	7715137	.	-	1	Parent=Os02t0236100-01
Chr02	irgsp1_rep	CDS	7713685	7713828	.	-	1	Parent=Os02t0236100-01
Chr02	irgsp1_rep	CDS	7713526	7713597	.	-	1	Parent=Os02t0236100-01
Chr02	irgsp1_rep	CDS	7713367	7713426	.	-	1	Parent=Os02t0236100-01
Chr02	irgsp1_rep	CDS	7713093	7713166	.	-	1	Parent=Os02t0236100-01
Chr02	irgsp1_rep	CDS	7712872	7713024	.	-	2	Parent=Os02t0236100-01
Chr02	irgsp1_rep	CDS	7712444	7712779	.	-	2	Parent=Os02t0236100-01
Chr02	irgsp1_rep	CDS	7711808	7712199	.	-	2	Parent=Os02t0236100-01
Chr02	irgsp1_rep	CDS	7711388	7711705	.	-	0	Parent=Os02t0236100-01
Chr02	irgsp1_rep	three_prime_UTR	7711097	7711387	.	-	.	Parent=Os02t0236100-01
Chr02	irgsp1_rep	mRNA	7718960	7723687	.	-	.	ID=Os02t0236200-01;Name=Os02t0236200-01;Locus_id=Os02g0236200;RAP-DB Gene Symbol Synonym(s)=OsGSK3;RAP-DB Gene Name Synonym(s)=glycogen synthase kinase 3 (GSK3)/SHAGGY-like kinase 3;Oryzabase Gene Symbol Synonym(s)=OsSK23/OsGSK4%2C OsSK23%2C OsGSK4%2C SK23%2C GSK4%2C OsGSK3%2C GSK3;Oryzabase Gene Name Synonym(s)=GSK3/SHAGGY-Like Kinase 23%2C GSK3-like Kinase 4;Note=Glycogen synthase kinase (GSK3)/SHAGGY-like kinase%2C Ortholog of Arabidopsis BR INSENSITIVE2 (BIN2)%2C Regulation of brassinosteroid (BR) signaling;Transcript_evidence=AK073725;ORF_evidence=Q6EUS4;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),Protein kinase domain (IPR000719),Glycogen synthase kinase 3%2C catalytic domain (IPR039192),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J033061L20;Manual Curation=May 14%2C 2019;Literature_PMID=30923230;Oryzabase=22635;Expression=AK073725;TENOR=Os02t0236200-01;KEGG=Os02t0236200-01 (EC:2.7.11.26);Subcellular location=cytoplasm (GO:0005737), nucleus (GO:0005634)
Chr02	irgsp1_rep	five_prime_UTR	7723540	7723687	.	-	.	Parent=Os02t0236200-01
Chr02	irgsp1_rep	CDS	7723420	7723539	.	-	0	Parent=Os02t0236200-01
Chr02	irgsp1_rep	CDS	7722432	7722521	.	-	0	Parent=Os02t0236200-01
Chr02	irgsp1_rep	CDS	7722283	7722342	.	-	0	Parent=Os02t0236200-01
Chr02	irgsp1_rep	CDS	7721934	7722206	.	-	0	Parent=Os02t0236200-01
Chr02	irgsp1_rep	CDS	7721765	7721839	.	-	0	Parent=Os02t0236200-01
Chr02	irgsp1_rep	CDS	7721618	7721674	.	-	0	Parent=Os02t0236200-01
Chr02	irgsp1_rep	CDS	7721063	7721203	.	-	0	Parent=Os02t0236200-01
Chr02	irgsp1_rep	CDS	7720917	7720967	.	-	0	Parent=Os02t0236200-01
Chr02	irgsp1_rep	CDS	7720722	7720817	.	-	0	Parent=Os02t0236200-01
Chr02	irgsp1_rep	CDS	7720544	7720627	.	-	0	Parent=Os02t0236200-01
Chr02	irgsp1_rep	CDS	7719811	7719912	.	-	0	Parent=Os02t0236200-01
Chr02	irgsp1_rep	CDS	7719661	7719717	.	-	0	Parent=Os02t0236200-01
Chr02	irgsp1_rep	three_prime_UTR	7718960	7719660	.	-	.	Parent=Os02t0236200-01
Chr02	irgsp1_rep	mRNA	7719811	7722344	.	+	.	ID=Os02t0236401-00;Name=Os02t0236401-00;Locus_id=Os02g0236401;Note=Non-protein coding transcript.;Transcript_evidence=tplb0034j24 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os02t0236401-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	exon	7719811	7719914	.	+	.	Parent=Os02t0236401-00
Chr02	irgsp1_rep	exon	7720549	7720625	.	+	.	Parent=Os02t0236401-00
Chr02	irgsp1_rep	exon	7720720	7720841	.	+	.	Parent=Os02t0236401-00
Chr02	irgsp1_rep	exon	7721042	7721185	.	+	.	Parent=Os02t0236401-00
Chr02	irgsp1_rep	exon	7721695	7721836	.	+	.	Parent=Os02t0236401-00
Chr02	irgsp1_rep	exon	7721931	7722180	.	+	.	Parent=Os02t0236401-00
Chr02	irgsp1_rep	exon	7722254	7722344	.	+	.	Parent=Os02t0236401-00
Chr02	irgsp1_rep	mRNA	7751287	7753674	.	+	.	ID=Os02t0236600-01;Name=Os02t0236600-01;Locus_id=Os02g0236600;Oryzabase Gene Symbol Synonym(s)=prx27%2C PRX27%2C OsPRX27;Oryzabase Gene Name Synonym(s)=class III peroxidase 27;Note=Peroxidase P7 (EC 1.11.1.7) (TP7).;Transcript_evidence=AK243299 (DDBJ%2C Best hit);ORF_evidence=Q5U1U1 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J100054A05;Oryzabase=14554;TENOR=Os02t0236600-01;KEGG=Os02t0236600-01 (EC:1.11.1.7)
Chr02	irgsp1_rep	five_prime_UTR	7751287	7751379	.	+	.	Parent=Os02t0236600-01
Chr02	irgsp1_rep	CDS	7751380	7751601	.	+	0	Parent=Os02t0236600-01
Chr02	irgsp1_rep	CDS	7751729	7751920	.	+	0	Parent=Os02t0236600-01
Chr02	irgsp1_rep	CDS	7752649	7753200	.	+	0	Parent=Os02t0236600-01
Chr02	irgsp1_rep	three_prime_UTR	7753201	7753674	.	+	.	Parent=Os02t0236600-01
Chr02	irgsp1_rep	mRNA	7760994	7762414	.	+	.	ID=Os02t0236800-01;Name=Os02t0236800-01;Locus_id=Os02g0236800;Oryzabase Gene Symbol Synonym(s)=prx26;Oryzabase Gene Name Synonym(s)=class III peroxidase 26;Note=Similar to Peroxidase (EC 1.11.1.7).;Transcript_evidence=AK099886 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793);NIAS_FLcDNA=J013112B18;Oryzabase=14553;Expression=AK099886;TENOR=Os02t0236800-01;KEGG=Os02t0236800-01 (EC:1.11.1.7)
Chr02	irgsp1_rep	five_prime_UTR	7760994	7761071	.	+	.	Parent=Os02t0236800-01
Chr02	irgsp1_rep	CDS	7761072	7761302	.	+	0	Parent=Os02t0236800-01
Chr02	irgsp1_rep	CDS	7761404	7761598	.	+	0	Parent=Os02t0236800-01
Chr02	irgsp1_rep	CDS	7761691	7762245	.	+	0	Parent=Os02t0236800-01
Chr02	irgsp1_rep	three_prime_UTR	7762246	7762414	.	+	.	Parent=Os02t0236800-01
Chr02	irgsp1_rep	mRNA	7761021	7762397	.	+	.	ID=Os02t0236800-02;Name=Os02t0236800-02;Locus_id=Os02g0236800;Oryzabase Gene Symbol Synonym(s)=prx26;Oryzabase Gene Name Synonym(s)=class III peroxidase 26;Note=Similar to Peroxidase (EC 1.11.1.7).;Transcript_evidence=AK104670 (DDBJ%2C Best hit),AK068642 (DDBJ%2C Best hit);ORF_evidence=Q5U1R7 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793);NIAS_FLcDNA=001-018-A04,J013157D18;Oryzabase=14553;TENOR=Os02t0236800-02
Chr02	irgsp1_rep	five_prime_UTR	7761021	7761071	.	+	.	Parent=Os02t0236800-02
Chr02	irgsp1_rep	CDS	7761072	7761302	.	+	0	Parent=Os02t0236800-02
Chr02	irgsp1_rep	CDS	7761404	7761598	.	+	0	Parent=Os02t0236800-02
Chr02	irgsp1_rep	CDS	7761691	7762245	.	+	0	Parent=Os02t0236800-02
Chr02	irgsp1_rep	three_prime_UTR	7762246	7762397	.	+	.	Parent=Os02t0236800-02
Chr02	irgsp1_rep	mRNA	7770051	7770890	.	-	.	ID=Os02t0236900-00;Name=Os02t0236900-00;Locus_id=Os02g0236900;Note=Hypothetical protein.;Transcript_evidence=tplb0038a01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0236900-00
Chr02	irgsp1_rep	five_prime_UTR	7770631	7770890	.	-	.	Parent=Os02t0236900-00
Chr02	irgsp1_rep	CDS	7770160	7770630	.	-	0	Parent=Os02t0236900-00
Chr02	irgsp1_rep	three_prime_UTR	7770051	7770159	.	-	.	Parent=Os02t0236900-00
Chr02	irgsp1_rep	mRNA	7770038	7771054	.	+	.	ID=Os02t0237000-00;Name=Os02t0237000-00;Locus_id=Os02g0237000;Oryzabase Gene Symbol Synonym(s)=prx25;Oryzabase Gene Name Synonym(s)=class III peroxidase 25;Note=Similar to peroxidase 52.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001147254.1 (RefSeq);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);Oryzabase=14552;TENOR=Os02t0237000-00;KEGG=Os02t0237000-00
Chr02	irgsp1_rep	CDS	7770038	7771054	.	+	0	Parent=Os02t0237000-00
Chr02	irgsp1_rep	mRNA	7772399	7776161	.	-	.	ID=Os02t0237100-01;Name=Os02t0237100-01;Locus_id=Os02g0237100;CGSNL Gene Symbol=ACL5;CGSNL Gene Name=ACAULIS5;Oryzabase Gene Symbol Synonym(s)=OsACL5;Oryzabase Gene Name Synonym(s)=Acaulis5%2C Acaulis 5;Note=Similar to Spermine synthase.;Transcript_evidence=AK073410 (DDBJ%2C Best hit);ORF_evidence=XP_002873952.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Spermine synthase (IPR001045);NIAS_FLcDNA=J033039K17;Oryzabase=21670;Expression=AK073410;TENOR=Os02t0237100-01;KEGG=Os02t0237100-01 (EC:2.5.1.16)
Chr02	irgsp1_rep	five_prime_UTR	7775968	7776161	.	-	.	Parent=Os02t0237100-01
Chr02	irgsp1_rep	CDS	7775795	7775967	.	-	0	Parent=Os02t0237100-01
Chr02	irgsp1_rep	CDS	7775202	7775268	.	-	1	Parent=Os02t0237100-01
Chr02	irgsp1_rep	CDS	7774820	7774914	.	-	0	Parent=Os02t0237100-01
Chr02	irgsp1_rep	CDS	7774549	7774651	.	-	1	Parent=Os02t0237100-01
Chr02	irgsp1_rep	CDS	7774142	7774230	.	-	0	Parent=Os02t0237100-01
Chr02	irgsp1_rep	CDS	7773618	7773774	.	-	1	Parent=Os02t0237100-01
Chr02	irgsp1_rep	CDS	7773436	7773511	.	-	0	Parent=Os02t0237100-01
Chr02	irgsp1_rep	CDS	7773265	7773323	.	-	2	Parent=Os02t0237100-01
Chr02	irgsp1_rep	CDS	7772984	7773120	.	-	0	Parent=Os02t0237100-01
Chr02	irgsp1_rep	CDS	7772736	7772814	.	-	1	Parent=Os02t0237100-01
Chr02	irgsp1_rep	three_prime_UTR	7772399	7772735	.	-	.	Parent=Os02t0237100-01
Chr02	irgsp1_rep	mRNA	7775144	7778858	.	+	.	ID=Os02t0237801-01;Name=Os02t0237801-01;Locus_id=Os02g0237801;Note=Hypothetical conserved gene.;Transcript_evidence=AK288396 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090027N23;TENOR=Os02t0237801-01;KEGG=Os02t0237801-01
Chr02	irgsp1_rep	five_prime_UTR	7775144	7777783	.	+	.	Parent=Os02t0237801-01
Chr02	irgsp1_rep	CDS	7777784	7778125	.	+	0	Parent=Os02t0237801-01
Chr02	irgsp1_rep	three_prime_UTR	7778126	7778858	.	+	.	Parent=Os02t0237801-01
Chr02	irgsp1_rep	mRNA	7813610	7815599	.	-	.	ID=Os02t0238150-00;Name=Os02t0238150-00;Locus_id=Os02g0238150;Note=Hypothetical protein.;Transcript_evidence=tplb0030l08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0238150-00
Chr02	irgsp1_rep	five_prime_UTR	7814579	7815599	.	-	.	Parent=Os02t0238150-00
Chr02	irgsp1_rep	CDS	7814354	7814578	.	-	0	Parent=Os02t0238150-00
Chr02	irgsp1_rep	three_prime_UTR	7814317	7814353	.	-	.	Parent=Os02t0238150-00
Chr02	irgsp1_rep	three_prime_UTR	7813610	7814221	.	-	.	Parent=Os02t0238150-00
Chr02	irgsp1_rep	mRNA	7845990	7852176	.	-	.	ID=Os02t0238500-01;Name=Os02t0238500-01;Locus_id=Os02g0238500;Note=Similar to scramblase family protein.;Transcript_evidence=AK068881 (DDBJ%2C Best hit);ORF_evidence=NP_001149067.1 (RefSeq);InterPro=Scramblase (IPR005552);NIAS_FLcDNA=J023001G05;TENOR=Os02t0238500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	7851922	7852176	.	-	0	Parent=Os02t0238500-01
Chr02	irgsp1_rep	CDS	7849464	7849550	.	-	0	Parent=Os02t0238500-01
Chr02	irgsp1_rep	CDS	7849030	7849071	.	-	0	Parent=Os02t0238500-01
Chr02	irgsp1_rep	CDS	7848877	7848921	.	-	0	Parent=Os02t0238500-01
Chr02	irgsp1_rep	CDS	7847414	7847479	.	-	0	Parent=Os02t0238500-01
Chr02	irgsp1_rep	CDS	7847290	7847346	.	-	0	Parent=Os02t0238500-01
Chr02	irgsp1_rep	CDS	7847117	7847178	.	-	0	Parent=Os02t0238500-01
Chr02	irgsp1_rep	CDS	7846867	7846987	.	-	1	Parent=Os02t0238500-01
Chr02	irgsp1_rep	CDS	7846345	7846422	.	-	0	Parent=Os02t0238500-01
Chr02	irgsp1_rep	CDS	7846132	7846242	.	-	0	Parent=Os02t0238500-01
Chr02	irgsp1_rep	three_prime_UTR	7845990	7846131	.	-	.	Parent=Os02t0238500-01
Chr02	irgsp1_rep	mRNA	7938411	7939811	.	+	.	ID=Os02t0240100-01;Name=Os02t0240100-01;Locus_id=Os02g0240100;Oryzabase Gene Symbol Synonym(s)=prx30;Oryzabase Gene Name Synonym(s)=class III peroxidase 30;Note=Similar to Peroxidase 2 (Fragment).;Transcript_evidence=AK108037 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=002-137-C10;Oryzabase=14557;Expression=AK108037;TENOR=Os02t0240100-01;KEGG=Os02t0240100-01
Chr02	irgsp1_rep	five_prime_UTR	7938411	7938545	.	+	.	Parent=Os02t0240100-01
Chr02	irgsp1_rep	CDS	7938546	7938965	.	+	0	Parent=Os02t0240100-01
Chr02	irgsp1_rep	CDS	7939041	7939604	.	+	0	Parent=Os02t0240100-01
Chr02	irgsp1_rep	three_prime_UTR	7939605	7939811	.	+	.	Parent=Os02t0240100-01
Chr02	irgsp1_rep	mRNA	7948543	7949997	.	+	.	ID=Os02t0240300-01;Name=Os02t0240300-01;Locus_id=Os02g0240300;Oryzabase Gene Symbol Synonym(s)=prx29;Oryzabase Gene Name Synonym(s)=class III peroxidase 29;Note=Similar to Class III peroxidase GvPx2b (Fragment).;Transcript_evidence=AK067000 (DDBJ%2C Best hit),AK104645 (DDBJ%2C Best hit);ORF_evidence=Q5I3F2 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J013091I12,006-310-G11;Oryzabase=14556;TENOR=Os02t0240300-01
Chr02	irgsp1_rep	five_prime_UTR	7948543	7948707	.	+	.	Parent=Os02t0240300-01
Chr02	irgsp1_rep	CDS	7948708	7948917	.	+	0	Parent=Os02t0240300-01
Chr02	irgsp1_rep	CDS	7949053	7949250	.	+	0	Parent=Os02t0240300-01
Chr02	irgsp1_rep	CDS	7949334	7949891	.	+	0	Parent=Os02t0240300-01
Chr02	irgsp1_rep	three_prime_UTR	7949892	7949997	.	+	.	Parent=Os02t0240300-01
Chr02	irgsp1_rep	mRNA	7975665	7978686	.	-	.	ID=Os02t0241100-01;Name=Os02t0241100-01;Locus_id=Os02g0241100;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK287713 (DDBJ%2C Best hit);ORF_evidence=B7F9F7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J065133I06;TENOR=Os02t0241100-01;KEGG=Os02t0241100-01
Chr02	irgsp1_rep	five_prime_UTR	7978623	7978686	.	-	.	Parent=Os02t0241100-01
Chr02	irgsp1_rep	CDS	7977317	7978622	.	-	0	Parent=Os02t0241100-01
Chr02	irgsp1_rep	CDS	7976138	7976835	.	-	2	Parent=Os02t0241100-01
Chr02	irgsp1_rep	three_prime_UTR	7975665	7976137	.	-	.	Parent=Os02t0241100-01
Chr02	irgsp1_rep	mRNA	7986053	7988630	.	+	.	ID=Os02t0241200-00;Name=Os02t0241200-00;Locus_id=Os02g0241200;CGSNL Gene Symbol=DLN52;CGSNL Gene Name=DLN REPRESSOR 52;Oryzabase Gene Symbol Synonym(s)=OsDLN52;Oryzabase Gene Name Synonym(s)=DLN repressor 52%2C DLN motif protein 52;Note=Myb-like DNA-binding domain%2C SHAQKYF class domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6ER41 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);Oryzabase=23168;TENOR=Os02t0241200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	7986053	7986476	.	+	0	Parent=Os02t0241200-00
Chr02	irgsp1_rep	CDS	7986719	7986795	.	+	2	Parent=Os02t0241200-00
Chr02	irgsp1_rep	CDS	7986968	7987028	.	+	0	Parent=Os02t0241200-00
Chr02	irgsp1_rep	CDS	7987177	7987420	.	+	2	Parent=Os02t0241200-00
Chr02	irgsp1_rep	CDS	7987514	7987907	.	+	1	Parent=Os02t0241200-00
Chr02	irgsp1_rep	CDS	7988193	7988630	.	+	0	Parent=Os02t0241200-00
Chr02	irgsp1_rep	mRNA	7991943	7996772	.	-	.	ID=Os02t0241300-01;Name=Os02t0241300-01;Locus_id=Os02g0241300;Note=Conserved hypothetical protein.;Transcript_evidence=AK100715 (DDBJ%2C Best hit);ORF_evidence=B9F4H8 (UniProt);NIAS_FLcDNA=J023115O03;Expression=AK100715;TENOR=Os02t0241300-01;KEGG=Os02t0241300-01
Chr02	irgsp1_rep	five_prime_UTR	7996670	7996772	.	-	.	Parent=Os02t0241300-01
Chr02	irgsp1_rep	CDS	7996483	7996669	.	-	0	Parent=Os02t0241300-01
Chr02	irgsp1_rep	CDS	7996127	7996272	.	-	2	Parent=Os02t0241300-01
Chr02	irgsp1_rep	CDS	7995364	7995602	.	-	0	Parent=Os02t0241300-01
Chr02	irgsp1_rep	CDS	7995198	7995253	.	-	1	Parent=Os02t0241300-01
Chr02	irgsp1_rep	CDS	7994838	7995094	.	-	2	Parent=Os02t0241300-01
Chr02	irgsp1_rep	CDS	7994400	7994612	.	-	0	Parent=Os02t0241300-01
Chr02	irgsp1_rep	CDS	7993937	7993960	.	-	0	Parent=Os02t0241300-01
Chr02	irgsp1_rep	three_prime_UTR	7993869	7993936	.	-	.	Parent=Os02t0241300-01
Chr02	irgsp1_rep	three_prime_UTR	7993359	7993463	.	-	.	Parent=Os02t0241300-01
Chr02	irgsp1_rep	three_prime_UTR	7992860	7993252	.	-	.	Parent=Os02t0241300-01
Chr02	irgsp1_rep	three_prime_UTR	7991943	7992409	.	-	.	Parent=Os02t0241300-01
Chr02	irgsp1_rep	mRNA	8004993	8017344	.	+	.	ID=Os02t0241600-01;Name=Os02t0241600-01;Locus_id=Os02g0241600;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK111618 (DDBJ%2C Best hit);ORF_evidence=NP_001152688.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J013099H24;Expression=AK111618;TENOR=Os02t0241600-01;KEGG=Os02t0241600-01
Chr02	irgsp1_rep	five_prime_UTR	8004993	8005201	.	+	.	Parent=Os02t0241600-01
Chr02	irgsp1_rep	five_prime_UTR	8007553	8007608	.	+	.	Parent=Os02t0241600-01
Chr02	irgsp1_rep	CDS	8007609	8007851	.	+	0	Parent=Os02t0241600-01
Chr02	irgsp1_rep	CDS	8007950	8008153	.	+	0	Parent=Os02t0241600-01
Chr02	irgsp1_rep	CDS	8008460	8008651	.	+	0	Parent=Os02t0241600-01
Chr02	irgsp1_rep	CDS	8008761	8008999	.	+	0	Parent=Os02t0241600-01
Chr02	irgsp1_rep	CDS	8010657	8010752	.	+	1	Parent=Os02t0241600-01
Chr02	irgsp1_rep	CDS	8010867	8010959	.	+	1	Parent=Os02t0241600-01
Chr02	irgsp1_rep	CDS	8012382	8012462	.	+	1	Parent=Os02t0241600-01
Chr02	irgsp1_rep	CDS	8013333	8013419	.	+	1	Parent=Os02t0241600-01
Chr02	irgsp1_rep	CDS	8013838	8013934	.	+	1	Parent=Os02t0241600-01
Chr02	irgsp1_rep	CDS	8014124	8014416	.	+	0	Parent=Os02t0241600-01
Chr02	irgsp1_rep	CDS	8014648	8014773	.	+	1	Parent=Os02t0241600-01
Chr02	irgsp1_rep	CDS	8014856	8014875	.	+	1	Parent=Os02t0241600-01
Chr02	irgsp1_rep	CDS	8015034	8015190	.	+	2	Parent=Os02t0241600-01
Chr02	irgsp1_rep	CDS	8015321	8015609	.	+	1	Parent=Os02t0241600-01
Chr02	irgsp1_rep	CDS	8015690	8015762	.	+	0	Parent=Os02t0241600-01
Chr02	irgsp1_rep	CDS	8016945	8017027	.	+	2	Parent=Os02t0241600-01
Chr02	irgsp1_rep	three_prime_UTR	8017028	8017344	.	+	.	Parent=Os02t0241600-01
Chr02	irgsp1_rep	mRNA	8014186	8017045	.	-	.	ID=Os02t0241650-00;Name=Os02t0241650-00;Locus_id=Os02g0241650;Note=Hypothetical gene.;Transcript_evidence=BT017362 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0241650-00;KEGG=Os02t0241650-00
Chr02	irgsp1_rep	five_prime_UTR	8017045	8017045	.	-	.	Parent=Os02t0241650-00
Chr02	irgsp1_rep	CDS	8016838	8017044	.	-	0	Parent=Os02t0241650-00
Chr02	irgsp1_rep	CDS	8015554	8015583	.	-	0	Parent=Os02t0241650-00
Chr02	irgsp1_rep	three_prime_UTR	8015297	8015553	.	-	.	Parent=Os02t0241650-00
Chr02	irgsp1_rep	three_prime_UTR	8015003	8015164	.	-	.	Parent=Os02t0241650-00
Chr02	irgsp1_rep	three_prime_UTR	8014631	8014768	.	-	.	Parent=Os02t0241650-00
Chr02	irgsp1_rep	three_prime_UTR	8014186	8014403	.	-	.	Parent=Os02t0241650-00
Chr02	irgsp1_rep	mRNA	8033812	8035457	.	-	.	ID=Os02t0242100-01;Name=Os02t0242100-01;Locus_id=Os02g0242100;Note=Similar to hydroquinone glucosyltransferase.;Transcript_evidence=AK289249 (DDBJ%2C Best hit);ORF_evidence=NP_001148283.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J100080A08;TENOR=Os02t0242100-01;KEGG=Os02t0242100-01 (EC:2.4.1.218)
Chr02	irgsp1_rep	five_prime_UTR	8035454	8035457	.	-	.	Parent=Os02t0242100-01
Chr02	irgsp1_rep	CDS	8033999	8035453	.	-	0	Parent=Os02t0242100-01
Chr02	irgsp1_rep	three_prime_UTR	8033812	8033998	.	-	.	Parent=Os02t0242100-01
Chr02	irgsp1_rep	mRNA	8051954	8053519	.	+	.	ID=Os02t0242550-00;Name=Os02t0242550-00;Locus_id=Os02g0242550;Note=Similar to hydroquinone glucosyltransferase.;Transcript_evidence=AK365522 (DDBJ);ORF_evidence=NP_001148283.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os02t0242550-00;KEGG=Os02t0242550-00 (EC:2.4.1.218)
Chr02	irgsp1_rep	CDS	8051954	8053519	.	+	0	Parent=Os02t0242550-00
Chr02	irgsp1_rep	mRNA	8057652	8059642	.	+	.	ID=Os02t0242600-01;Name=Os02t0242600-01;Locus_id=Os02g0242600;CGSNL Gene Symbol=GLUBX;CGSNL Gene Name=GLUTELIN BX;Oryzabase Gene Symbol Synonym(s)=OsGluBX%2C OsGluBX-J%2C OsGluBX-I%2C OsEnS-31%2C EnS-31%2C GLU2.1;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 31%2C Glutelin2.1;Note=Similar to Glutelin.;Transcript_evidence=AK242872 (DDBJ%2C Best hit);ORF_evidence=Q84X93 (UniProt);GO=Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=11-S seed storage protein%2C plant (IPR006044),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710);NIAS_FLcDNA=J090076M21;Oryzabase=12262;TENOR=Os02t0242600-01;KEGG=Os02t0242600-01
Chr02	irgsp1_rep	five_prime_UTR	8057652	8057685	.	+	.	Parent=Os02t0242600-01
Chr02	irgsp1_rep	CDS	8057686	8058013	.	+	0	Parent=Os02t0242600-01
Chr02	irgsp1_rep	CDS	8058150	8058418	.	+	2	Parent=Os02t0242600-01
Chr02	irgsp1_rep	CDS	8058535	8059002	.	+	0	Parent=Os02t0242600-01
Chr02	irgsp1_rep	CDS	8059099	8059533	.	+	0	Parent=Os02t0242600-01
Chr02	irgsp1_rep	three_prime_UTR	8059534	8059642	.	+	.	Parent=Os02t0242600-01
Chr02	irgsp1_rep	mRNA	8076332	8077510	.	-	.	ID=Os02t0242900-00;Name=Os02t0242900-00;Locus_id=Os02g0242900;Note=Similar to hydroquinone glucosyltransferase.;Transcript_evidence=CT837657 (DDBJ%2C Best hit);ORF_evidence=NP_001148283.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os02t0242900-00
Chr02	irgsp1_rep	five_prime_UTR	8077471	8077510	.	-	.	Parent=Os02t0242900-00
Chr02	irgsp1_rep	CDS	8076332	8077470	.	-	0	Parent=Os02t0242900-00
Chr02	irgsp1_rep	mRNA	8092152	8093845	.	-	.	ID=Os02t0243300-01;Name=Os02t0243300-01;Locus_id=Os02g0243300;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK105563 (DDBJ%2C Best hit);ORF_evidence=NP_001148283.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=001-128-B11;Expression=AK105563;TENOR=Os02t0243300-01;KEGG=Os02t0243300-01
Chr02	irgsp1_rep	five_prime_UTR	8093802	8093845	.	-	.	Parent=Os02t0243300-01
Chr02	irgsp1_rep	CDS	8092332	8093801	.	-	0	Parent=Os02t0243300-01
Chr02	irgsp1_rep	three_prime_UTR	8092152	8092331	.	-	.	Parent=Os02t0243300-01
Chr02	irgsp1_rep	mRNA	8110975	8113258	.	+	.	ID=Os02t0244000-00;Name=Os02t0244000-00;Locus_id=Os02g0244000;Oryzabase Gene Symbol Synonym(s)=OsSTA56;Note=Herpesvirus UL139%2C cytomegalovirus domain containing protein.;Transcript_evidence=tplb0026e04 (Wheat FLcDNA);ORF_evidence=Q6ESV3 (UniProt);InterPro=Herpesvirus UL139%2C cytomegalovirus (IPR021042);Oryzabase=19359;TENOR=Os02t0244000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	8110975	8111486	.	+	0	Parent=Os02t0244000-00
Chr02	irgsp1_rep	CDS	8111624	8111780	.	+	1	Parent=Os02t0244000-00
Chr02	irgsp1_rep	CDS	8112862	8112903	.	+	0	Parent=Os02t0244000-00
Chr02	irgsp1_rep	three_prime_UTR	8112904	8113258	.	+	.	Parent=Os02t0244000-00
Chr02	irgsp1_rep	mRNA	8115223	8121651	.	+	.	ID=Os02t0244100-01;Name=Os02t0244100-01;Locus_id=Os02g0244100;RAP-DB Gene Symbol Synonym(s)=GW2%2C OsGW2;RAP-DB Gene Name Synonym(s)=GRAIN WEIGHT 2%2C GRAIN WIDTH AND WEIGHT2;CGSNL Gene Symbol=GW2;CGSNL Gene Name=GRAIN WEIGHT 2;Oryzabase Gene Symbol Synonym(s)=OsGW2;Oryzabase Gene Name Synonym(s)=GRAIN WIDTH AND WEIGHT2%2C Grain width 2;Note=RING-type E3 ubiquitin ligase%2C Regulation of grain width and weight;Transcript_evidence=EF447275 (Fengaizhan-1%2C 6bp insertion in CDS),AK065504;ORF_evidence=A4GWX9,Q6ESV2;GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841);NIAS_FLcDNA=J013027C16;Manual Curation=February 25%2C 2015;Literature_PMID=17417637;Oryzabase=8900;Expression=AK065504;TENOR=Os02t0244100-01;KEGG=Os02t0244100-01
Chr02	irgsp1_rep	five_prime_UTR	8115223	8115506	.	+	.	Parent=Os02t0244100-01
Chr02	irgsp1_rep	CDS	8115507	8115707	.	+	0	Parent=Os02t0244100-01
Chr02	irgsp1_rep	CDS	8116996	8117047	.	+	0	Parent=Os02t0244100-01
Chr02	irgsp1_rep	CDS	8117133	8117178	.	+	2	Parent=Os02t0244100-01
Chr02	irgsp1_rep	CDS	8117271	8117352	.	+	1	Parent=Os02t0244100-01
Chr02	irgsp1_rep	CDS	8117431	8117593	.	+	0	Parent=Os02t0244100-01
Chr02	irgsp1_rep	CDS	8117686	8117788	.	+	2	Parent=Os02t0244100-01
Chr02	irgsp1_rep	CDS	8119485	8119551	.	+	1	Parent=Os02t0244100-01
Chr02	irgsp1_rep	CDS	8120830	8121387	.	+	0	Parent=Os02t0244100-01
Chr02	irgsp1_rep	three_prime_UTR	8121388	8121651	.	+	.	Parent=Os02t0244100-01
Chr02	irgsp1_rep	mRNA	8135122	8143345	.	+	.	ID=Os02t0244300-01;Name=Os02t0244300-01;Locus_id=Os02g0244300;RAP-DB Gene Symbol Synonym(s)=OsUBP15%2C LG1;RAP-DB Gene Name Synonym(s)=ubiquitin-specific protease15%2C large grain1;CGSNL Gene Symbol=LG1;CGSNL Gene Name=LARGE GRAIN 1;Oryzabase Gene Symbol Synonym(s)=OsLG1%2C OsUBP15%2C UBP15%2C OsUBP15/LG1%2C OsUBP7-1%2C UBP7-1;Oryzabase Gene Name Synonym(s)=large grain1%2C large grain 1%2C ubiquitin-specific protease15%2C ubiquitin-specific processing protease 7-1;Note=Ubiquitin-specific protease%2C Deubiquitination enzyme%2C Positive regulation of grain width and size;Transcript_evidence=AK121968;ORF_evidence=Q0E2F9;GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Biological Process: protein deubiquitination (GO:0016579),Molecular Function: thiol-dependent ubiquitinyl hydrolase activity (GO:0036459);InterPro=Papain-like cysteine peptidase superfamily (IPR038765),Zinc finger%2C MYND-type (IPR002893),Ubiquitin specific protease domain (IPR028889),Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase (IPR001394),Ubiquitin specific protease%2C conserved site (IPR018200);NIAS_FLcDNA=J033108F20;Manual Curation=May 8%2C 2019;Literature_PMID=30796160;Oryzabase=22824;Expression=AK121968;TENOR=Os02t0244300-01;KEGG=Os02t0244300-01;Subcellular location=cytoplasm (GO:0005737), nucleus (GO:0005634)
Chr02	irgsp1_rep	five_prime_UTR	8135122	8135269	.	+	.	Parent=Os02t0244300-01
Chr02	irgsp1_rep	five_prime_UTR	8135405	8135421	.	+	.	Parent=Os02t0244300-01
Chr02	irgsp1_rep	five_prime_UTR	8136295	8136373	.	+	.	Parent=Os02t0244300-01
Chr02	irgsp1_rep	CDS	8136374	8136696	.	+	0	Parent=Os02t0244300-01
Chr02	irgsp1_rep	CDS	8137068	8137458	.	+	1	Parent=Os02t0244300-01
Chr02	irgsp1_rep	CDS	8137541	8137928	.	+	0	Parent=Os02t0244300-01
Chr02	irgsp1_rep	CDS	8138018	8138172	.	+	2	Parent=Os02t0244300-01
Chr02	irgsp1_rep	CDS	8138264	8138352	.	+	0	Parent=Os02t0244300-01
Chr02	irgsp1_rep	CDS	8138524	8138609	.	+	1	Parent=Os02t0244300-01
Chr02	irgsp1_rep	CDS	8138706	8138868	.	+	2	Parent=Os02t0244300-01
Chr02	irgsp1_rep	CDS	8139947	8140070	.	+	1	Parent=Os02t0244300-01
Chr02	irgsp1_rep	CDS	8140325	8140482	.	+	0	Parent=Os02t0244300-01
Chr02	irgsp1_rep	CDS	8140574	8140658	.	+	1	Parent=Os02t0244300-01
Chr02	irgsp1_rep	CDS	8140995	8141207	.	+	0	Parent=Os02t0244300-01
Chr02	irgsp1_rep	CDS	8142215	8142276	.	+	0	Parent=Os02t0244300-01
Chr02	irgsp1_rep	CDS	8142367	8143057	.	+	1	Parent=Os02t0244300-01
Chr02	irgsp1_rep	three_prime_UTR	8143058	8143345	.	+	.	Parent=Os02t0244300-01
Chr02	irgsp1_rep	mRNA	8143624	8143679	.	-	.	ID=Os02t0244450-00;Name=Os02t0244450-00;Locus_id=Os02g0244450;Note=Non-protein coding transcript.;Transcript_evidence=EU941690 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0244450-00
Chr02	irgsp1_rep	exon	8143624	8143679	.	-	.	Parent=Os02t0244450-00
Chr02	irgsp1_rep	mRNA	8164661	8169145	.	+	.	ID=Os02t0244600-01;Name=Os02t0244600-01;Locus_id=Os02g0244600;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK069852 (DDBJ%2C Best hit);ORF_evidence=A3A503 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Ataxin-2%2C C-terminal (IPR009818),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023036I06;Expression=AK069852;TENOR=Os02t0244600-01;KEGG=Os02t0244600-01
Chr02	irgsp1_rep	five_prime_UTR	8164661	8164822	.	+	.	Parent=Os02t0244600-01
Chr02	irgsp1_rep	CDS	8164823	8165263	.	+	0	Parent=Os02t0244600-01
Chr02	irgsp1_rep	CDS	8165909	8166019	.	+	0	Parent=Os02t0244600-01
Chr02	irgsp1_rep	CDS	8166106	8166150	.	+	0	Parent=Os02t0244600-01
Chr02	irgsp1_rep	CDS	8166967	8167039	.	+	0	Parent=Os02t0244600-01
Chr02	irgsp1_rep	CDS	8167116	8167228	.	+	2	Parent=Os02t0244600-01
Chr02	irgsp1_rep	CDS	8167331	8167390	.	+	0	Parent=Os02t0244600-01
Chr02	irgsp1_rep	CDS	8168188	8168235	.	+	0	Parent=Os02t0244600-01
Chr02	irgsp1_rep	CDS	8168323	8168391	.	+	0	Parent=Os02t0244600-01
Chr02	irgsp1_rep	CDS	8168519	8168580	.	+	0	Parent=Os02t0244600-01
Chr02	irgsp1_rep	CDS	8168672	8168729	.	+	1	Parent=Os02t0244600-01
Chr02	irgsp1_rep	three_prime_UTR	8168730	8169145	.	+	.	Parent=Os02t0244600-01
Chr02	irgsp1_rep	mRNA	8165926	8169030	.	-	.	ID=Os02t0244650-00;Name=Os02t0244650-00;Locus_id=Os02g0244650;Note=Non-protein coding transcript.;Transcript_evidence=BT016972 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0244650-00
Chr02	irgsp1_rep	exon	8168658	8169030	.	-	.	Parent=Os02t0244650-00
Chr02	irgsp1_rep	exon	8168312	8168446	.	-	.	Parent=Os02t0244650-00
Chr02	irgsp1_rep	exon	8167329	8167425	.	-	.	Parent=Os02t0244650-00
Chr02	irgsp1_rep	exon	8167118	8167223	.	-	.	Parent=Os02t0244650-00
Chr02	irgsp1_rep	exon	8166901	8167041	.	-	.	Parent=Os02t0244650-00
Chr02	irgsp1_rep	exon	8165926	8166000	.	-	.	Parent=Os02t0244650-00
Chr02	irgsp1_rep	mRNA	8172421	8184167	.	-	.	ID=Os02t0244700-01;Name=Os02t0244700-01;Locus_id=Os02g0244700;RAP-DB Gene Symbol Synonym(s)=Osppc1;RAP-DB Gene Name Synonym(s)=Phosphoenolpyruvate carboxylase 1;Oryzabase Gene Symbol Synonym(s)=PEPC-1%2C Osppc1%2C ppc1;Oryzabase Gene Name Synonym(s)=PEP carboxylase 1%2C Phosphoenolpyruvate carboxylase 1%2C PEPCase 1;Note=Phosphoenolpyruvate carboxylase%2C Nitrogen accumulation;Transcript_evidence=AK065425;ORF_evidence=Q6EUD7;GO=Biological Process: tricarboxylic acid cycle (GO:0006099),Biological Process: carbon fixation (GO:0015977),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphoenolpyruvate carboxylase activity (GO:0008964);InterPro=Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily (IPR015813),Phosphoenolpyruvate carboxylase (IPR021135),Phosphoenolpyruvate carboxylase%2C bacterial/plant-type (IPR022805),Phosphoenolpyruvate carboxylase%2C Lys active site (IPR018129),Phosphoenolpyruvate carboxylase%2C His active site (IPR033129);NIAS_FLcDNA=J013011N21;Manual Curation=October 7%2C 2020;Literature_PMID=25505033,20194759,DOI:10.1017/S0960258513000354;Oryzabase=11419;Expression=AK065425;TENOR=Os02t0244700-01;KEGG=Os02t0244700-01 (EC:4.1.1.31)
Chr02	irgsp1_rep	five_prime_UTR	8183999	8184167	.	-	.	Parent=Os02t0244700-01
Chr02	irgsp1_rep	CDS	8183819	8183998	.	-	0	Parent=Os02t0244700-01
Chr02	irgsp1_rep	CDS	8183326	8183717	.	-	0	Parent=Os02t0244700-01
Chr02	irgsp1_rep	CDS	8183152	8183236	.	-	1	Parent=Os02t0244700-01
Chr02	irgsp1_rep	CDS	8182228	8182450	.	-	0	Parent=Os02t0244700-01
Chr02	irgsp1_rep	CDS	8181802	8181905	.	-	2	Parent=Os02t0244700-01
Chr02	irgsp1_rep	CDS	8181626	8181713	.	-	0	Parent=Os02t0244700-01
Chr02	irgsp1_rep	CDS	8180700	8180854	.	-	2	Parent=Os02t0244700-01
Chr02	irgsp1_rep	CDS	8179618	8180616	.	-	0	Parent=Os02t0244700-01
Chr02	irgsp1_rep	CDS	8178722	8179108	.	-	0	Parent=Os02t0244700-01
Chr02	irgsp1_rep	CDS	8178053	8178346	.	-	0	Parent=Os02t0244700-01
Chr02	irgsp1_rep	three_prime_UTR	8177967	8178052	.	-	.	Parent=Os02t0244700-01
Chr02	irgsp1_rep	three_prime_UTR	8177672	8177856	.	-	.	Parent=Os02t0244700-01
Chr02	irgsp1_rep	three_prime_UTR	8173877	8173984	.	-	.	Parent=Os02t0244700-01
Chr02	irgsp1_rep	three_prime_UTR	8172421	8172773	.	-	.	Parent=Os02t0244700-01
Chr02	irgsp1_rep	mRNA	8177820	8184167	.	-	.	ID=Os02t0244700-02;Name=Os02t0244700-02;Locus_id=Os02g0244700;Oryzabase Gene Symbol Synonym(s)=PEPC-1%2C Osppc1%2C ppc1;Oryzabase Gene Name Synonym(s)=PEP carboxylase 1%2C Phosphoenolpyruvate carboxylase 1%2C PEPCase 1;Note=Similar to Phosphoenolpyruvate carboxylase 1 (EC 4.1.1.31) (PEPCase 1) (CP21).;Transcript_evidence=AK065029 (DDBJ%2C Best hit);ORF_evidence=Q9FYX8 (UniProt);GO=Biological Process: tricarboxylic acid cycle (GO:0006099),Biological Process: carbon fixation (GO:0015977),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphoenolpyruvate carboxylase activity (GO:0008964);InterPro=Pyruvate/Phosphoenolpyruvate kinase (IPR015813),Phosphoenolpyruvate carboxylase%2C active site (IPR018129),Phosphoenolpyruvate carboxylase (IPR021135);NIAS_FLcDNA=J013001G17;Oryzabase=11419;Expression=AK065029;TENOR=Os02t0244700-02;KEGG=Os02t0244700-02 (EC:4.1.1.31)
Chr02	irgsp1_rep	five_prime_UTR	8183999	8184167	.	-	.	Parent=Os02t0244700-02
Chr02	irgsp1_rep	CDS	8183819	8183998	.	-	0	Parent=Os02t0244700-02
Chr02	irgsp1_rep	CDS	8183326	8183717	.	-	0	Parent=Os02t0244700-02
Chr02	irgsp1_rep	CDS	8183152	8183236	.	-	1	Parent=Os02t0244700-02
Chr02	irgsp1_rep	CDS	8182228	8182450	.	-	0	Parent=Os02t0244700-02
Chr02	irgsp1_rep	CDS	8181802	8181905	.	-	2	Parent=Os02t0244700-02
Chr02	irgsp1_rep	CDS	8181626	8181713	.	-	0	Parent=Os02t0244700-02
Chr02	irgsp1_rep	CDS	8180700	8180854	.	-	2	Parent=Os02t0244700-02
Chr02	irgsp1_rep	CDS	8179618	8180616	.	-	0	Parent=Os02t0244700-02
Chr02	irgsp1_rep	CDS	8178722	8179108	.	-	0	Parent=Os02t0244700-02
Chr02	irgsp1_rep	CDS	8178053	8178346	.	-	0	Parent=Os02t0244700-02
Chr02	irgsp1_rep	three_prime_UTR	8177820	8178052	.	-	.	Parent=Os02t0244700-02
Chr02	irgsp1_rep	mRNA	8177823	8184161	.	-	.	ID=Os02t0244700-03;Name=Os02t0244700-03;Locus_id=Os02g0244700;Oryzabase Gene Symbol Synonym(s)=PEPC-1%2C Osppc1%2C ppc1;Oryzabase Gene Name Synonym(s)=PEP carboxylase 1%2C Phosphoenolpyruvate carboxylase 1%2C PEPCase 1;Note=Similar to Phosphoenolpyruvate carboxylase.;Transcript_evidence=AK106451 (DDBJ%2C Best hit);ORF_evidence=Q9FYX8 (UniProt);GO=Biological Process: tricarboxylic acid cycle (GO:0006099),Biological Process: carbon fixation (GO:0015977),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphoenolpyruvate carboxylase activity (GO:0008964);InterPro=Pyruvate/Phosphoenolpyruvate kinase (IPR015813),Phosphoenolpyruvate carboxylase%2C active site (IPR018129),Phosphoenolpyruvate carboxylase (IPR021135);NIAS_FLcDNA=002-103-F01;Oryzabase=11419;Expression=AK106451;TENOR=Os02t0244700-03;KEGG=Os02t0244700-03 (EC:4.1.1.31)
Chr02	irgsp1_rep	five_prime_UTR	8183999	8184161	.	-	.	Parent=Os02t0244700-03
Chr02	irgsp1_rep	CDS	8183819	8183998	.	-	0	Parent=Os02t0244700-03
Chr02	irgsp1_rep	CDS	8183326	8183717	.	-	0	Parent=Os02t0244700-03
Chr02	irgsp1_rep	CDS	8183152	8183236	.	-	1	Parent=Os02t0244700-03
Chr02	irgsp1_rep	CDS	8182228	8182450	.	-	0	Parent=Os02t0244700-03
Chr02	irgsp1_rep	CDS	8181802	8181905	.	-	2	Parent=Os02t0244700-03
Chr02	irgsp1_rep	CDS	8181626	8181713	.	-	0	Parent=Os02t0244700-03
Chr02	irgsp1_rep	CDS	8180700	8180854	.	-	2	Parent=Os02t0244700-03
Chr02	irgsp1_rep	CDS	8180536	8180616	.	-	0	Parent=Os02t0244700-03
Chr02	irgsp1_rep	CDS	8177842	8177892	.	-	0	Parent=Os02t0244700-03
Chr02	irgsp1_rep	three_prime_UTR	8177823	8177841	.	-	.	Parent=Os02t0244700-03
Chr02	irgsp1_rep	mRNA	8177820	8180092	.	-	.	ID=Os02t0244700-04;Name=Os02t0244700-04;Locus_id=Os02g0244700;Oryzabase Gene Symbol Synonym(s)=PEPC-1%2C Osppc1%2C ppc1;Oryzabase Gene Name Synonym(s)=PEP carboxylase 1%2C Phosphoenolpyruvate carboxylase 1%2C PEPCase 1;Note=Similar to Phosphoenolpyruvate carboxylase.;Transcript_evidence=AK062201 (DDBJ%2C Best hit);ORF_evidence=Q9FYX8 (UniProt);GO=Biological Process: tricarboxylic acid cycle (GO:0006099),Biological Process: carbon fixation (GO:0015977),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphoenolpyruvate carboxylase activity (GO:0008964);InterPro=Pyruvate/Phosphoenolpyruvate kinase (IPR015813),Phosphoenolpyruvate carboxylase%2C active site (IPR018129),Phosphoenolpyruvate carboxylase (IPR021135);NIAS_FLcDNA=001-046-G07;Oryzabase=11419;Expression=AK062201;TENOR=Os02t0244700-04;KEGG=Os02t0244700-04 (EC:4.1.1.31)
Chr02	irgsp1_rep	five_prime_UTR	8180092	8180092	.	-	.	Parent=Os02t0244700-04
Chr02	irgsp1_rep	CDS	8179618	8180091	.	-	0	Parent=Os02t0244700-04
Chr02	irgsp1_rep	CDS	8178722	8179108	.	-	0	Parent=Os02t0244700-04
Chr02	irgsp1_rep	CDS	8178053	8178346	.	-	0	Parent=Os02t0244700-04
Chr02	irgsp1_rep	three_prime_UTR	8177820	8178052	.	-	.	Parent=Os02t0244700-04
Chr02	irgsp1_rep	mRNA	8178055	8184020	.	+	.	ID=Os02t0244850-00;Name=Os02t0244850-00;Locus_id=Os02g0244850;Note=Hypothetical protein.;Transcript_evidence=tplb0046d07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0244850-00
Chr02	irgsp1_rep	five_prime_UTR	8178055	8178334	.	+	.	Parent=Os02t0244850-00
Chr02	irgsp1_rep	five_prime_UTR	8178712	8179101	.	+	.	Parent=Os02t0244850-00
Chr02	irgsp1_rep	five_prime_UTR	8179608	8180631	.	+	.	Parent=Os02t0244850-00
Chr02	irgsp1_rep	five_prime_UTR	8180714	8180892	.	+	.	Parent=Os02t0244850-00
Chr02	irgsp1_rep	five_prime_UTR	8181753	8181900	.	+	.	Parent=Os02t0244850-00
Chr02	irgsp1_rep	five_prime_UTR	8182224	8182459	.	+	.	Parent=Os02t0244850-00
Chr02	irgsp1_rep	five_prime_UTR	8183164	8183239	.	+	.	Parent=Os02t0244850-00
Chr02	irgsp1_rep	five_prime_UTR	8183329	8183369	.	+	.	Parent=Os02t0244850-00
Chr02	irgsp1_rep	CDS	8183370	8183702	.	+	0	Parent=Os02t0244850-00
Chr02	irgsp1_rep	CDS	8183807	8184020	.	+	0	Parent=Os02t0244850-00
Chr02	irgsp1_rep	mRNA	8197017	8199726	.	+	.	ID=Os02t0245000-01;Name=Os02t0245000-01;Locus_id=Os02g0245000;Note=Ubiquitin domain containing protein.;Transcript_evidence=AK119874 (DDBJ%2C Best hit);ORF_evidence=NP_001117289.1 (RefSeq);GO=Biological Process: RNA processing (GO:0006396),Molecular Function: RNA binding (GO:0003723),Molecular Function: protein binding (GO:0005515);InterPro=SWAP/Surp (IPR000061),Ubiquitin (IPR000626),Ubiquitin supergroup (IPR019955),Pre-mRNA splicing factor PRP21-like protein (IPR022030);NIAS_FLcDNA=002-179-E06;Expression=AK119874;TENOR=Os02t0245000-01;KEGG=Os02t0245000-01
Chr02	irgsp1_rep	five_prime_UTR	8197017	8197040	.	+	.	Parent=Os02t0245000-01
Chr02	irgsp1_rep	CDS	8197041	8199149	.	+	0	Parent=Os02t0245000-01
Chr02	irgsp1_rep	CDS	8199282	8199551	.	+	0	Parent=Os02t0245000-01
Chr02	irgsp1_rep	three_prime_UTR	8199552	8199726	.	+	.	Parent=Os02t0245000-01
Chr02	irgsp1_rep	mRNA	8197217	8199718	.	+	.	ID=Os02t0245000-02;Name=Os02t0245000-02;Locus_id=Os02g0245000;Note=Similar to predicted protein.;Transcript_evidence=AK119770 (DDBJ%2C Best hit);ORF_evidence=NP_001117289.1 (RefSeq);GO=Biological Process: RNA processing (GO:0006396),Molecular Function: RNA binding (GO:0003723),Molecular Function: protein binding (GO:0005515);InterPro=SWAP/Surp (IPR000061),Ubiquitin (IPR000626),Ubiquitin supergroup (IPR019955),Pre-mRNA splicing factor PRP21-like protein (IPR022030);NIAS_FLcDNA=002-172-F01;Expression=AK119770;TENOR=Os02t0245000-02;KEGG=Os02t0245000-02
Chr02	irgsp1_rep	five_prime_UTR	8197217	8197217	.	+	.	Parent=Os02t0245000-02
Chr02	irgsp1_rep	CDS	8197218	8199149	.	+	0	Parent=Os02t0245000-02
Chr02	irgsp1_rep	CDS	8199282	8199551	.	+	0	Parent=Os02t0245000-02
Chr02	irgsp1_rep	three_prime_UTR	8199552	8199718	.	+	.	Parent=Os02t0245000-02
Chr02	irgsp1_rep	mRNA	8205190	8206393	.	-	.	ID=Os02t0245100-01;Name=Os02t0245100-01;Locus_id=Os02g0245100;Oryzabase Gene Symbol Synonym(s)=OsWD40-39;Note=Similar to Peroxisomal targeting signal type 2 receptor.;Transcript_evidence=AK112004 (DDBJ%2C Best hit),AK111709 (DDBJ%2C Best hit),AK112008 (DDBJ%2C Best hit);ORF_evidence=Q2V6P1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=006-201-H02,J023025I02,006-208-E07;Oryzabase=10720;TENOR=Os02t0245100-01
Chr02	irgsp1_rep	five_prime_UTR	8206300	8206393	.	-	.	Parent=Os02t0245100-01
Chr02	irgsp1_rep	CDS	8205331	8206299	.	-	0	Parent=Os02t0245100-01
Chr02	irgsp1_rep	three_prime_UTR	8205190	8205330	.	-	.	Parent=Os02t0245100-01
Chr02	irgsp1_rep	mRNA	8204260	8206377	.	-	.	ID=Os02t0245100-02;Name=Os02t0245100-02;Locus_id=Os02g0245100;Oryzabase Gene Symbol Synonym(s)=OsWD40-39;Note=Conserved hypothetical protein.;Transcript_evidence=AK100203 (DDBJ%2C Best hit);ORF_evidence=A2X2W2 (UniProt);NIAS_FLcDNA=J023041B08;Oryzabase=10720;TENOR=Os02t0245100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	8206376	8206377	.	-	.	Parent=Os02t0245100-02
Chr02	irgsp1_rep	CDS	8206055	8206375	.	-	0	Parent=Os02t0245100-02
Chr02	irgsp1_rep	CDS	8205823	8205855	.	-	0	Parent=Os02t0245100-02
Chr02	irgsp1_rep	CDS	8205507	8205803	.	-	0	Parent=Os02t0245100-02
Chr02	irgsp1_rep	three_prime_UTR	8204260	8205506	.	-	.	Parent=Os02t0245100-02
Chr02	irgsp1_rep	mRNA	8209595	8218226	.	+	.	ID=Os02t0245200-01;Name=Os02t0245200-01;Locus_id=Os02g0245200;Note=Conserved hypothetical protein.;Transcript_evidence=AK120309 (DDBJ%2C Best hit);ORF_evidence=B9F4R3 (UniProt);NIAS_FLcDNA=J013055D13;TENOR=Os02t0245200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	8209595	8211646	.	+	.	Parent=Os02t0245200-01
Chr02	irgsp1_rep	CDS	8211647	8211850	.	+	0	Parent=Os02t0245200-01
Chr02	irgsp1_rep	CDS	8213194	8213352	.	+	0	Parent=Os02t0245200-01
Chr02	irgsp1_rep	three_prime_UTR	8213353	8215199	.	+	.	Parent=Os02t0245200-01
Chr02	irgsp1_rep	three_prime_UTR	8215281	8216077	.	+	.	Parent=Os02t0245200-01
Chr02	irgsp1_rep	three_prime_UTR	8216264	8216424	.	+	.	Parent=Os02t0245200-01
Chr02	irgsp1_rep	three_prime_UTR	8216815	8218226	.	+	.	Parent=Os02t0245200-01
Chr02	irgsp1_rep	mRNA	8209629	8217129	.	+	.	ID=Os02t0245200-02;Name=Os02t0245200-02;Locus_id=Os02g0245200;Note=Similar to cDNA clone:J013055D13%2C full insert sequence.;Transcript_evidence=AK103531 (DDBJ%2C Best hit);ORF_evidence=B7F5R4 (UniProt);NIAS_FLcDNA=J033131P19;Expression=AK103531;TENOR=Os02t0245200-02;KEGG=Os02t0245200-02
Chr02	irgsp1_rep	five_prime_UTR	8209629	8210704	.	+	.	Parent=Os02t0245200-02
Chr02	irgsp1_rep	five_prime_UTR	8210794	8211646	.	+	.	Parent=Os02t0245200-02
Chr02	irgsp1_rep	CDS	8211647	8211850	.	+	0	Parent=Os02t0245200-02
Chr02	irgsp1_rep	CDS	8213194	8213343	.	+	0	Parent=Os02t0245200-02
Chr02	irgsp1_rep	CDS	8215986	8216077	.	+	0	Parent=Os02t0245200-02
Chr02	irgsp1_rep	CDS	8216264	8216423	.	+	1	Parent=Os02t0245200-02
Chr02	irgsp1_rep	three_prime_UTR	8216424	8216424	.	+	.	Parent=Os02t0245200-02
Chr02	irgsp1_rep	three_prime_UTR	8216815	8217129	.	+	.	Parent=Os02t0245200-02
Chr02	irgsp1_rep	mRNA	8214019	8223355	.	+	.	ID=Os02t0245200-03;Name=Os02t0245200-03;Locus_id=Os02g0245200;Note=Hypothetical gene.;Transcript_evidence=AK119456 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-133-E03;TENOR=Os02t0245200-03;KEGG=Os02t0245200-03
Chr02	irgsp1_rep	five_prime_UTR	8214019	8214960	.	+	.	Parent=Os02t0245200-03
Chr02	irgsp1_rep	five_prime_UTR	8215084	8215199	.	+	.	Parent=Os02t0245200-03
Chr02	irgsp1_rep	five_prime_UTR	8215281	8215488	.	+	.	Parent=Os02t0245200-03
Chr02	irgsp1_rep	CDS	8215489	8215701	.	+	0	Parent=Os02t0245200-03
Chr02	irgsp1_rep	three_prime_UTR	8215702	8216077	.	+	.	Parent=Os02t0245200-03
Chr02	irgsp1_rep	three_prime_UTR	8216264	8216424	.	+	.	Parent=Os02t0245200-03
Chr02	irgsp1_rep	three_prime_UTR	8216815	8216998	.	+	.	Parent=Os02t0245200-03
Chr02	irgsp1_rep	three_prime_UTR	8217181	8217364	.	+	.	Parent=Os02t0245200-03
Chr02	irgsp1_rep	three_prime_UTR	8222918	8223355	.	+	.	Parent=Os02t0245200-03
Chr02	irgsp1_rep	mRNA	8224552	8225246	.	-	.	ID=Os02t0245301-00;Name=Os02t0245301-00;Locus_id=Os02g0245301;Note=Hypothetical conserved gene.;Transcript_evidence=AK069635 (DDBJ%2C Secondary hit);ORF_evidence=Q6K3T8 (UniProt);Expression=AK069635;TENOR=Os02t0245301-00;KEGG=Os02t0245301-00
Chr02	irgsp1_rep	five_prime_UTR	8225027	8225246	.	-	.	Parent=Os02t0245301-00
Chr02	irgsp1_rep	CDS	8224640	8225026	.	-	0	Parent=Os02t0245301-00
Chr02	irgsp1_rep	three_prime_UTR	8224552	8224639	.	-	.	Parent=Os02t0245301-00
Chr02	irgsp1_rep	mRNA	8240778	8241649	.	+	.	ID=Os02t0245600-00;Name=Os02t0245600-00;Locus_id=Os02g0245600;Note=Hypothetical conserved gene.;Transcript_evidence=BT019050 (DDBJ);ORF_evidence=B6TKY2 (UniProt);TENOR=Os02t0245600-00;KEGG=Os02t0245600-00
Chr02	irgsp1_rep	CDS	8240778	8241578	.	+	0	Parent=Os02t0245600-00
Chr02	irgsp1_rep	three_prime_UTR	8241579	8241649	.	+	.	Parent=Os02t0245600-00
Chr02	irgsp1_rep	mRNA	8244347	8248444	.	-	.	ID=Os02t0245800-01;Name=Os02t0245800-01;Locus_id=Os02g0245800;RAP-DB Gene Symbol Synonym(s)=KAT3%2C OsKAT3;RAP-DB Gene Name Synonym(s)=SHAKER POTASSIUM CHANNEL 3%2C shaker potassium channel OsKAT3;CGSNL Gene Symbol=KAT3;CGSNL Gene Name=SHAKER POTASSIUM CHANNEL 3;Oryzabase Gene Symbol Synonym(s)=OsKAT3;Oryzabase Gene Name Synonym(s)=shaker potassium channel OsKAT3;Note=Inward rectifying shaker-like potassium channel%2C Negative regulation of OsKAT2 channel activity;Transcript_evidence=AK100808 (partial cds),Inferred from literature;ORF_evidence=Q6K3T2;GO=Biological Process: ion transport (GO:0006811),Biological Process: potassium ion transport (GO:0006813),Biological Process: transmembrane transport (GO:0055085),Molecular Function: ion channel activity (GO:0005216),Molecular Function: voltage-gated potassium channel activity (GO:0005249),Cellular Component: membrane (GO:0016020);InterPro=Potassium channel%2C voltage-dependent%2C EAG/ELK/ERG (IPR003938),Ion transport domain (IPR005821),RmlC-like jelly roll fold (IPR014710),Cyclic nucleotide-binding-like (IPR018490),Cyclic nucleotide-binding domain (IPR000595),KHA domain (IPR021789);NIAS_FLcDNA=J023121M17 (truncated);Manual Curation=December 19%2C 2016;Literature_PMID=23967316;Oryzabase=10368;TENOR=Os02t0245800-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	8248397	8248444	.	-	.	Parent=Os02t0245800-01
Chr02	irgsp1_rep	CDS	8248227	8248396	.	-	0	Parent=Os02t0245800-01
Chr02	irgsp1_rep	CDS	8247905	8248120	.	-	1	Parent=Os02t0245800-01
Chr02	irgsp1_rep	CDS	8247633	8247788	.	-	1	Parent=Os02t0245800-01
Chr02	irgsp1_rep	CDS	8247490	8247547	.	-	1	Parent=Os02t0245800-01
Chr02	irgsp1_rep	CDS	8247031	8247348	.	-	0	Parent=Os02t0245800-01
Chr02	irgsp1_rep	CDS	8245992	8246231	.	-	0	Parent=Os02t0245800-01
Chr02	irgsp1_rep	CDS	8245802	8245900	.	-	0	Parent=Os02t0245800-01
Chr02	irgsp1_rep	CDS	8245673	8245705	.	-	0	Parent=Os02t0245800-01
Chr02	irgsp1_rep	CDS	8245401	8245586	.	-	0	Parent=Os02t0245800-01
Chr02	irgsp1_rep	CDS	8244749	8245316	.	-	0	Parent=Os02t0245800-01
Chr02	irgsp1_rep	CDS	8244485	8244597	.	-	2	Parent=Os02t0245800-01
Chr02	irgsp1_rep	three_prime_UTR	8244347	8244484	.	-	.	Parent=Os02t0245800-01
Chr02	irgsp1_rep	mRNA	8245408	8248330	.	+	.	ID=Os02t0245850-00;Name=Os02t0245850-00;Locus_id=Os02g0245850;Note=Non-protein coding transcript.;Transcript_evidence=tplb0036k14 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os02t0245850-00
Chr02	irgsp1_rep	exon	8245408	8245613	.	+	.	Parent=Os02t0245850-00
Chr02	irgsp1_rep	exon	8245793	8245902	.	+	.	Parent=Os02t0245850-00
Chr02	irgsp1_rep	exon	8245995	8246450	.	+	.	Parent=Os02t0245850-00
Chr02	irgsp1_rep	exon	8246715	8247343	.	+	.	Parent=Os02t0245850-00
Chr02	irgsp1_rep	exon	8247483	8247534	.	+	.	Parent=Os02t0245850-00
Chr02	irgsp1_rep	exon	8247624	8247776	.	+	.	Parent=Os02t0245850-00
Chr02	irgsp1_rep	exon	8247889	8248120	.	+	.	Parent=Os02t0245850-00
Chr02	irgsp1_rep	exon	8248226	8248330	.	+	.	Parent=Os02t0245850-00
Chr02	irgsp1_rep	mRNA	8256456	8257568	.	+	.	ID=Os02t0245900-01;Name=Os02t0245900-01;Locus_id=Os02g0245900;Note=Conserved hypothetical protein.;Transcript_evidence=AK108184 (DDBJ%2C Best hit);ORF_evidence=Q6Z4L8 (UniProt);NIAS_FLcDNA=002-140-B06;TENOR=Os02t0245900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	8256456	8257179	.	+	.	Parent=Os02t0245900-01
Chr02	irgsp1_rep	CDS	8257180	8257329	.	+	0	Parent=Os02t0245900-01
Chr02	irgsp1_rep	three_prime_UTR	8257330	8257568	.	+	.	Parent=Os02t0245900-01
Chr02	irgsp1_rep	mRNA	8261247	8261809	.	-	.	ID=Os02t0246101-00;Name=Os02t0246101-00;Locus_id=Os02g0246101;Note=Similar to SKIP interacting protein 23 (Fragment).;Transcript_evidence=EU946024 (DDBJ);ORF_evidence=B8Q8A9 (UniProt);TENOR=Os02t0246101-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	8261769	8261809	.	-	.	Parent=Os02t0246101-00
Chr02	irgsp1_rep	CDS	8261247	8261768	.	-	0	Parent=Os02t0246101-00
Chr02	irgsp1_rep	mRNA	8262546	8265570	.	+	.	ID=Os02t0246300-00;Name=Os02t0246300-00;Locus_id=Os02g0246300;Note=Prefoldin domain containing protein.;Transcript_evidence=CT835473 (DDBJ%2C Best hit);ORF_evidence=NP_001148669.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Cellular Component: prefoldin complex (GO:0016272),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Prefoldin beta-like (IPR002777),Prefoldin (IPR009053);TENOR=Os02t0246300-00;KEGG=Os02t0246300-00
Chr02	irgsp1_rep	five_prime_UTR	8262546	8262635	.	+	.	Parent=Os02t0246300-00
Chr02	irgsp1_rep	CDS	8262636	8262733	.	+	0	Parent=Os02t0246300-00
Chr02	irgsp1_rep	CDS	8262831	8262901	.	+	1	Parent=Os02t0246300-00
Chr02	irgsp1_rep	CDS	8262999	8263125	.	+	2	Parent=Os02t0246300-00
Chr02	irgsp1_rep	CDS	8263232	8263292	.	+	1	Parent=Os02t0246300-00
Chr02	irgsp1_rep	CDS	8265311	8265358	.	+	0	Parent=Os02t0246300-00
Chr02	irgsp1_rep	three_prime_UTR	8265359	8265570	.	+	.	Parent=Os02t0246300-00
Chr02	irgsp1_rep	mRNA	8268233	8269291	.	-	.	ID=Os02t0246500-00;Name=Os02t0246500-00;Locus_id=Os02g0246500;Note=Protein of unknown function DUF594 domain containing protein.;Transcript_evidence=EU954024 (DDBJ);ORF_evidence=Q6K3S6 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);TENOR=Os02t0246500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	8268233	8269291	.	-	0	Parent=Os02t0246500-00
Chr02	irgsp1_rep	mRNA	8276839	8278454	.	+	.	ID=Os02t0246600-01;Name=Os02t0246600-01;Locus_id=Os02g0246600;Note=Conserved hypothetical protein.;Transcript_evidence=AK101361 (DDBJ%2C Best hit);ORF_evidence=B8AEY3 (UniProt);NIAS_FLcDNA=J033035H16;Expression=AK101361;TENOR=Os02t0246600-01;KEGG=Os02t0246600-01
Chr02	irgsp1_rep	five_prime_UTR	8276839	8277012	.	+	.	Parent=Os02t0246600-01
Chr02	irgsp1_rep	CDS	8277013	8277246	.	+	0	Parent=Os02t0246600-01
Chr02	irgsp1_rep	three_prime_UTR	8277247	8278015	.	+	.	Parent=Os02t0246600-01
Chr02	irgsp1_rep	three_prime_UTR	8278142	8278454	.	+	.	Parent=Os02t0246600-01
Chr02	irgsp1_rep	mRNA	8276843	8277585	.	+	.	ID=Os02t0246600-02;Name=Os02t0246600-02;Locus_id=Os02g0246600;Note=Conserved hypothetical protein.;Transcript_evidence=AK121483 (DDBJ%2C Best hit);ORF_evidence=B8AEY3 (UniProt);NIAS_FLcDNA=J023149O14;Expression=AK121483;TENOR=Os02t0246600-02;KEGG=Os02t0246600-02
Chr02	irgsp1_rep	five_prime_UTR	8276843	8277012	.	+	.	Parent=Os02t0246600-02
Chr02	irgsp1_rep	CDS	8277013	8277246	.	+	0	Parent=Os02t0246600-02
Chr02	irgsp1_rep	three_prime_UTR	8277247	8277585	.	+	.	Parent=Os02t0246600-02
Chr02	irgsp1_rep	mRNA	8292477	8293241	.	+	.	ID=Os02t0246900-01;Name=Os02t0246900-01;Locus_id=Os02g0246900;Note=Conserved hypothetical protein.;Transcript_evidence=AK069877 (DDBJ%2C Best hit);ORF_evidence=A2X2Y0 (UniProt);NIAS_FLcDNA=J023036D08;Expression=AK069877;TENOR=Os02t0246900-01;KEGG=Os02t0246900-01
Chr02	irgsp1_rep	five_prime_UTR	8292477	8292519	.	+	.	Parent=Os02t0246900-01
Chr02	irgsp1_rep	CDS	8292520	8293101	.	+	0	Parent=Os02t0246900-01
Chr02	irgsp1_rep	three_prime_UTR	8293102	8293241	.	+	.	Parent=Os02t0246900-01
Chr02	irgsp1_rep	mRNA	8299604	8306389	.	+	.	ID=Os02t0247000-01;Name=Os02t0247000-01;Locus_id=Os02g0247000;Note=Protein of unknown function DUF605 domain containing protein.;Transcript_evidence=AK107500 (DDBJ%2C Best hit);ORF_evidence=B8AEY4 (UniProt);InterPro=Protein of unknown function DUF605 (IPR006745),Vacuolar protein sorting-associate Vta1%2C N-terminal (IPR023175);NIAS_FLcDNA=002-129-D12;TENOR=Os02t0247000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	8299604	8299856	.	+	.	Parent=Os02t0247000-01
Chr02	irgsp1_rep	CDS	8299857	8300151	.	+	0	Parent=Os02t0247000-01
Chr02	irgsp1_rep	CDS	8301244	8301344	.	+	2	Parent=Os02t0247000-01
Chr02	irgsp1_rep	CDS	8301549	8301619	.	+	0	Parent=Os02t0247000-01
Chr02	irgsp1_rep	CDS	8301746	8301827	.	+	1	Parent=Os02t0247000-01
Chr02	irgsp1_rep	CDS	8301903	8302016	.	+	0	Parent=Os02t0247000-01
Chr02	irgsp1_rep	CDS	8302897	8303013	.	+	0	Parent=Os02t0247000-01
Chr02	irgsp1_rep	CDS	8303112	8303204	.	+	0	Parent=Os02t0247000-01
Chr02	irgsp1_rep	CDS	8303293	8303304	.	+	0	Parent=Os02t0247000-01
Chr02	irgsp1_rep	three_prime_UTR	8303305	8303373	.	+	.	Parent=Os02t0247000-01
Chr02	irgsp1_rep	three_prime_UTR	8303488	8303614	.	+	.	Parent=Os02t0247000-01
Chr02	irgsp1_rep	three_prime_UTR	8304079	8304216	.	+	.	Parent=Os02t0247000-01
Chr02	irgsp1_rep	three_prime_UTR	8304299	8304375	.	+	.	Parent=Os02t0247000-01
Chr02	irgsp1_rep	three_prime_UTR	8304445	8304727	.	+	.	Parent=Os02t0247000-01
Chr02	irgsp1_rep	three_prime_UTR	8305715	8305840	.	+	.	Parent=Os02t0247000-01
Chr02	irgsp1_rep	three_prime_UTR	8305948	8306065	.	+	.	Parent=Os02t0247000-01
Chr02	irgsp1_rep	three_prime_UTR	8306208	8306389	.	+	.	Parent=Os02t0247000-01
Chr02	irgsp1_rep	mRNA	8323866	8324946	.	+	.	ID=Os02t0247100-00;Name=Os02t0247100-00;Locus_id=Os02g0247100;CGSNL Gene Symbol=BZIP19;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 19;Oryzabase Gene Symbol Synonym(s)=OsbZIP19;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 19;Note=Similar to bZIP transcription factor family protein.;Transcript_evidence=CT835312 (DDBJ%2C Best hit);ORF_evidence=NP_001147754.1 (RefSeq);Oryzabase=10108;TENOR=Os02t0247100-00;KEGG=Os02t0247100-00
Chr02	irgsp1_rep	five_prime_UTR	8323866	8323987	.	+	.	Parent=Os02t0247100-00
Chr02	irgsp1_rep	CDS	8323988	8324258	.	+	0	Parent=Os02t0247100-00
Chr02	irgsp1_rep	CDS	8324382	8324488	.	+	2	Parent=Os02t0247100-00
Chr02	irgsp1_rep	three_prime_UTR	8324489	8324946	.	+	.	Parent=Os02t0247100-00
Chr02	irgsp1_rep	mRNA	8326165	8343175	.	-	.	ID=Os02t0247200-01;Name=Os02t0247200-01;Locus_id=Os02g0247200;Note=Similar to T-complex protein 1%2C gamma subunit (TCP-1-gamma) (CCT-gamma) (Matricin) (mTRiC-P5).;Transcript_evidence=AK102024 (DDBJ%2C Best hit);ORF_evidence=B6UCD0 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: cellular protein metabolic process (GO:0044267),Molecular Function: ATP binding (GO:0005524),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Chaperonin TCP-1%2C conserved site (IPR002194),Chaperonin Cpn60/TCP-1 (IPR002423),T-complex protein 1%2C gamma subunit (IPR012719),Chaperone%2C tailless complex polypeptide 1 (IPR017998);NIAS_FLcDNA=J033080K06;Expression=AK102024;TENOR=Os02t0247200-01;KEGG=Os02t0247200-01
Chr02	irgsp1_rep	five_prime_UTR	8343100	8343175	.	-	.	Parent=Os02t0247200-01
Chr02	irgsp1_rep	CDS	8343069	8343099	.	-	0	Parent=Os02t0247200-01
Chr02	irgsp1_rep	CDS	8342708	8342769	.	-	2	Parent=Os02t0247200-01
Chr02	irgsp1_rep	CDS	8342472	8342544	.	-	0	Parent=Os02t0247200-01
Chr02	irgsp1_rep	CDS	8341707	8341774	.	-	2	Parent=Os02t0247200-01
Chr02	irgsp1_rep	CDS	8341033	8341102	.	-	0	Parent=Os02t0247200-01
Chr02	irgsp1_rep	CDS	8328538	8328606	.	-	2	Parent=Os02t0247200-01
Chr02	irgsp1_rep	CDS	8328377	8328448	.	-	2	Parent=Os02t0247200-01
Chr02	irgsp1_rep	CDS	8328195	8328268	.	-	2	Parent=Os02t0247200-01
Chr02	irgsp1_rep	CDS	8327832	8328109	.	-	0	Parent=Os02t0247200-01
Chr02	irgsp1_rep	CDS	8327352	8327736	.	-	1	Parent=Os02t0247200-01
Chr02	irgsp1_rep	CDS	8327150	8327275	.	-	0	Parent=Os02t0247200-01
Chr02	irgsp1_rep	CDS	8326834	8326938	.	-	0	Parent=Os02t0247200-01
Chr02	irgsp1_rep	CDS	8326606	8326680	.	-	0	Parent=Os02t0247200-01
Chr02	irgsp1_rep	CDS	8326338	8326529	.	-	0	Parent=Os02t0247200-01
Chr02	irgsp1_rep	three_prime_UTR	8326165	8326337	.	-	.	Parent=Os02t0247200-01
Chr02	irgsp1_rep	mRNA	8350092	8351259	.	-	.	ID=Os02t0247500-01;Name=Os02t0247500-01;Locus_id=Os02g0247500;Note=Conserved hypothetical protein.;Transcript_evidence=AK110607 (DDBJ%2C Best hit);ORF_evidence=NP_001172563.1 (RefSeq);NIAS_FLcDNA=002-168-G12;TENOR=Os02t0247500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	8351232	8351259	.	-	.	Parent=Os02t0247500-01
Chr02	irgsp1_rep	CDS	8351019	8351231	.	-	0	Parent=Os02t0247500-01
Chr02	irgsp1_rep	three_prime_UTR	8350092	8351018	.	-	.	Parent=Os02t0247500-01
Chr02	irgsp1_rep	mRNA	8350331	8351592	.	+	.	ID=Os02t0247600-01;Name=Os02t0247600-01;Locus_id=Os02g0247600;Note=Conserved hypothetical protein.;Transcript_evidence=AK243415 (DDBJ%2C Best hit);ORF_evidence=B9F4S3 (UniProt);NIAS_FLcDNA=J100066C23;TENOR=Os02t0247600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	8350331	8350527	.	+	.	Parent=Os02t0247600-01
Chr02	irgsp1_rep	CDS	8350528	8351001	.	+	0	Parent=Os02t0247600-01
Chr02	irgsp1_rep	three_prime_UTR	8351002	8351592	.	+	.	Parent=Os02t0247600-01
Chr02	irgsp1_rep	mRNA	8358824	8362959	.	+	.	ID=Os02t0247800-01;Name=Os02t0247800-01;Locus_id=Os02g0247800;Oryzabase Gene Symbol Synonym(s)=OsEFCAX2%2C OsNCX4%2C OsNCX4.1%2C OsNCX4.2%2C NCX4%2C OsNCL2%2C NCL2;Oryzabase Gene Name Synonym(s)=EF-hand containing H+/cation exchanger 2%2C EF-hand containing CAX 2%2C Na+/Ca2+ Exchanger 4%2C Sodium/calcium exchanger 4%2C Na+/Ca2+ exchanger-like protein 2;Note=Similar to calcium ion binding protein.;Transcript_evidence=AK318570 (DDBJ%2C Best hit);ORF_evidence=B6U1M5 (UniProt);NIAS_FLcDNA=J090003C16;Oryzabase=15461;TENOR=Os02t0247800-01;KEGG=Os02t0247800-01
Chr02	irgsp1_rep	five_prime_UTR	8358824	8358863	.	+	.	Parent=Os02t0247800-01
Chr02	irgsp1_rep	CDS	8358864	8359370	.	+	0	Parent=Os02t0247800-01
Chr02	irgsp1_rep	three_prime_UTR	8359371	8359713	.	+	.	Parent=Os02t0247800-01
Chr02	irgsp1_rep	three_prime_UTR	8359849	8360037	.	+	.	Parent=Os02t0247800-01
Chr02	irgsp1_rep	three_prime_UTR	8361074	8361219	.	+	.	Parent=Os02t0247800-01
Chr02	irgsp1_rep	three_prime_UTR	8361306	8361570	.	+	.	Parent=Os02t0247800-01
Chr02	irgsp1_rep	three_prime_UTR	8361652	8361954	.	+	.	Parent=Os02t0247800-01
Chr02	irgsp1_rep	three_prime_UTR	8362166	8362959	.	+	.	Parent=Os02t0247800-01
Chr02	irgsp1_rep	mRNA	8367222	8368216	.	-	.	ID=Os02t0248100-00;Name=Os02t0248100-00;Locus_id=Os02g0248100;Note=Hypothetical conserved gene.;Transcript_evidence=CT835391 (DDBJ%2C Best hit);ORF_evidence=Q6K3R2 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os02t0248100-00;KEGG=Os02t0248100-00
Chr02	irgsp1_rep	five_prime_UTR	8367989	8368216	.	-	.	Parent=Os02t0248100-00
Chr02	irgsp1_rep	CDS	8367353	8367988	.	-	0	Parent=Os02t0248100-00
Chr02	irgsp1_rep	three_prime_UTR	8367222	8367352	.	-	.	Parent=Os02t0248100-00
Chr02	irgsp1_rep	mRNA	8380541	8384118	.	-	.	ID=Os02t0248200-00;Name=Os02t0248200-00;Locus_id=Os02g0248200;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=AK354388 (DDBJ);ORF_evidence=NP_001172877.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os02t0248200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	8383490	8384118	.	-	0	Parent=Os02t0248200-00
Chr02	irgsp1_rep	CDS	8380541	8381156	.	-	1	Parent=Os02t0248200-00
Chr02	irgsp1_rep	mRNA	8380576	8381196	.	+	.	ID=Os02t0248300-00;Name=Os02t0248300-00;Locus_id=Os02g0248300;Note=Hypothetical protein.;Transcript_evidence=EU943053 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0248300-00
Chr02	irgsp1_rep	five_prime_UTR	8380576	8380576	.	+	.	Parent=Os02t0248300-00
Chr02	irgsp1_rep	CDS	8380577	8381196	.	+	0	Parent=Os02t0248300-00
Chr02	irgsp1_rep	mRNA	8397656	8398297	.	-	.	ID=Os02t0248440-00;Name=Os02t0248440-00;Locus_id=Os02g0248440;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6K512 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os02t0248440-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	8397656	8398297	.	-	0	Parent=Os02t0248440-00
Chr02	irgsp1_rep	mRNA	8401328	8403216	.	-	.	ID=Os02t0248800-01;Name=Os02t0248800-01;Locus_id=Os02g0248800;Oryzabase Gene Symbol Synonym(s)=OsEnS-32%2C EnS-32;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 32;Note=Similar to Glutelin type-B 2 precursor.;Transcript_evidence=AK242009 (DDBJ%2C Best hit);ORF_evidence=Q02897 (UniProt);GO=Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=11-S seed storage protein%2C plant (IPR006044),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),11-S seed storage protein%2C conserved site (IPR022379);NIAS_FLcDNA=J075105H10;Oryzabase=18366;TENOR=Os02t0248800-01;KEGG=Os02t0248800-01
Chr02	irgsp1_rep	five_prime_UTR	8403193	8403216	.	-	.	Parent=Os02t0248800-01
Chr02	irgsp1_rep	CDS	8402865	8403192	.	-	0	Parent=Os02t0248800-01
Chr02	irgsp1_rep	CDS	8402482	8402744	.	-	2	Parent=Os02t0248800-01
Chr02	irgsp1_rep	CDS	8401912	8402382	.	-	0	Parent=Os02t0248800-01
Chr02	irgsp1_rep	CDS	8401389	8401814	.	-	0	Parent=Os02t0248800-01
Chr02	irgsp1_rep	three_prime_UTR	8401328	8401388	.	-	.	Parent=Os02t0248800-01
Chr02	irgsp1_rep	mRNA	8406709	8408682	.	-	.	ID=Os02t0249000-01;Name=Os02t0249000-01;Locus_id=Os02g0249000;RAP-DB Gene Symbol Synonym(s)=GLUD1%2C GluD1%2C GluD-1%2C OsEnS-33;RAP-DB Gene Name Synonym(s)=GLUTELIN D%2C Glutelin type-D%2C endosperm-specific gene 33;CGSNL Gene Symbol=GLUD1;CGSNL Gene Name=GLUTELIN D;Oryzabase Gene Symbol Synonym(s)=GluD1%2C GluD-1%2C OsEnS-33%2C EnS-33%2C GluD;Oryzabase Gene Name Synonym(s)=Glutelin type-D%2C endosperm-specific gene 33;Note=Glutelin%2C Seed strage protein;Transcript_evidence=AY429650 (Genbank),AK243018 (Genbank);ORF_evidence=Q6K508 (UniProt);GO=Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=11-S seed storage protein%2C plant (IPR006044),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),11-S seed storage protein%2C conserved site (IPR022379);NIAS_FLcDNA=J090098O20;Manual Curation=October 22%2C 2009;Literature_PMID=18980953;Oryzabase=10215;TENOR=Os02t0249000-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	8408653	8408682	.	-	.	Parent=Os02t0249000-01
Chr02	irgsp1_rep	CDS	8408346	8408652	.	-	0	Parent=Os02t0249000-01
Chr02	irgsp1_rep	CDS	8407974	8408236	.	-	2	Parent=Os02t0249000-01
Chr02	irgsp1_rep	CDS	8407389	8407841	.	-	0	Parent=Os02t0249000-01
Chr02	irgsp1_rep	CDS	8406837	8407268	.	-	0	Parent=Os02t0249000-01
Chr02	irgsp1_rep	three_prime_UTR	8406709	8406836	.	-	.	Parent=Os02t0249000-01
Chr02	irgsp1_rep	mRNA	8412713	8412959	.	+	.	ID=Os02t0249102-00;Name=Os02t0249102-00;Locus_id=Os02g0249102;Note=Non-protein coding transcript.;Transcript_evidence=EU941764 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0249102-00
Chr02	irgsp1_rep	exon	8412713	8412959	.	+	.	Parent=Os02t0249102-00
Chr02	irgsp1_rep	mRNA	8416954	8417585	.	-	.	ID=Os02t0249200-00;Name=Os02t0249200-00;Locus_id=Os02g0249200;Note=Similar to RING-H2 finger protein ATL5H.;Transcript_evidence=EU965288 (DDBJ);ORF_evidence=NP_001146951.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);TENOR=Os02t0249200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	8417085	8417585	.	-	0	Parent=Os02t0249200-00
Chr02	irgsp1_rep	three_prime_UTR	8416954	8417084	.	-	.	Parent=Os02t0249200-00
Chr02	irgsp1_rep	mRNA	8422881	8423702	.	+	.	ID=Os02t0249300-00;Name=Os02t0249300-00;Locus_id=Os02g0249300;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=CT835497 (DDBJ%2C Best hit);ORF_evidence=NP_001147143.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os02t0249300-00;KEGG=Os02t0249300-00
Chr02	irgsp1_rep	five_prime_UTR	8422881	8422924	.	+	.	Parent=Os02t0249300-00
Chr02	irgsp1_rep	CDS	8422925	8423524	.	+	0	Parent=Os02t0249300-00
Chr02	irgsp1_rep	three_prime_UTR	8423525	8423702	.	+	.	Parent=Os02t0249300-00
Chr02	irgsp1_rep	mRNA	8433458	8436694	.	+	.	ID=Os02t0249500-01;Name=Os02t0249500-01;Locus_id=Os02g0249500;Note=Conserved hypothetical protein.;Transcript_evidence=AK107597 (DDBJ%2C Best hit);ORF_evidence=B8AEZ3 (UniProt);NIAS_FLcDNA=002-131-B01;TENOR=Os02t0249500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	8433458	8433545	.	+	0	Parent=Os02t0249500-01
Chr02	irgsp1_rep	CDS	8435189	8435313	.	+	2	Parent=Os02t0249500-01
Chr02	irgsp1_rep	CDS	8435410	8435604	.	+	0	Parent=Os02t0249500-01
Chr02	irgsp1_rep	CDS	8435699	8435772	.	+	0	Parent=Os02t0249500-01
Chr02	irgsp1_rep	CDS	8435879	8436614	.	+	1	Parent=Os02t0249500-01
Chr02	irgsp1_rep	three_prime_UTR	8436615	8436694	.	+	.	Parent=Os02t0249500-01
Chr02	irgsp1_rep	mRNA	8446623	8448546	.	+	.	ID=Os02t0249600-01;Name=Os02t0249600-01;Locus_id=Os02g0249600;CGSNL Gene Symbol=GLU7;CGSNL Gene Name=GLUTELIN 7;Oryzabase Gene Symbol Synonym(s)=Glu7*(GluB2)%2C Glu7%2C GluB2%2C GLUB2%2C GLUB-2%2C GluB-2%2C GluB-7%2C GLUB7;Oryzabase Gene Name Synonym(s)=Rice glutelin7%2C Rice glutelin-7%2C Glutelin type-B 2 precursor%2C Glutelin type-B 2%2C Glutelin type-B 7%2C Glutelin type-B 2 acidic chain%2C Glutelin type-B 2 basic chain;Note=Similar to Glutelin.;Transcript_evidence=AK318578 (DDBJ%2C Best hit);ORF_evidence=Q02897 (UniProt);GO=Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=11-S seed storage protein%2C plant (IPR006044),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),11-S seed storage protein%2C conserved site (IPR022379);NIAS_FLcDNA=J090075F18;Oryzabase=136;TENOR=Os02t0249600-01;KEGG=Os02t0249600-01
Chr02	irgsp1_rep	five_prime_UTR	8446623	8446657	.	+	.	Parent=Os02t0249600-01
Chr02	irgsp1_rep	CDS	8446658	8446985	.	+	0	Parent=Os02t0249600-01
Chr02	irgsp1_rep	CDS	8447107	8447369	.	+	2	Parent=Os02t0249600-01
Chr02	irgsp1_rep	CDS	8447484	8447954	.	+	0	Parent=Os02t0249600-01
Chr02	irgsp1_rep	CDS	8448046	8448471	.	+	0	Parent=Os02t0249600-01
Chr02	irgsp1_rep	three_prime_UTR	8448472	8448546	.	+	.	Parent=Os02t0249600-01
Chr02	irgsp1_rep	mRNA	8453872	8455936	.	-	.	ID=Os02t0249700-01;Name=Os02t0249700-01;Locus_id=Os02g0249700;Oryzabase Gene Symbol Synonym(s)=OsFbox075%2C OsFbox75%2C Os_F0514;Oryzabase Gene Name Synonym(s)=F-box protein 75;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK106350 (DDBJ%2C Best hit);ORF_evidence=B8AEZ4 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-101-H10;Oryzabase=16871;Expression=AK106350;TENOR=Os02t0249700-01;KEGG=Os02t0249700-01
Chr02	irgsp1_rep	five_prime_UTR	8455877	8455936	.	-	.	Parent=Os02t0249700-01
Chr02	irgsp1_rep	CDS	8454751	8455876	.	-	0	Parent=Os02t0249700-01
Chr02	irgsp1_rep	CDS	8453895	8454088	.	-	2	Parent=Os02t0249700-01
Chr02	irgsp1_rep	three_prime_UTR	8453872	8453894	.	-	.	Parent=Os02t0249700-01
Chr02	irgsp1_rep	mRNA	8458664	8460633	.	-	.	ID=Os02t0249800-01;Name=Os02t0249800-01;Locus_id=Os02g0249800;Oryzabase Gene Symbol Synonym(s)=GluB;Oryzabase Gene Name Synonym(s)=Glutelin B isoform;Note=Glutelin precursor.;Transcript_evidence=AK107343 (DDBJ%2C Best hit);ORF_evidence=P14323 (UniProt);GO=Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=11-S seed storage protein%2C plant (IPR006044),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),11-S seed storage protein%2C conserved site (IPR022379);NIAS_FLcDNA=002-126-G05;Oryzabase=10213;Expression=AK107343;TENOR=Os02t0249800-01;KEGG=Os02t0249800-01
Chr02	irgsp1_rep	five_prime_UTR	8460592	8460633	.	-	.	Parent=Os02t0249800-01
Chr02	irgsp1_rep	CDS	8460264	8460591	.	-	0	Parent=Os02t0249800-01
Chr02	irgsp1_rep	CDS	8459890	8460152	.	-	2	Parent=Os02t0249800-01
Chr02	irgsp1_rep	CDS	8459292	8459774	.	-	0	Parent=Os02t0249800-01
Chr02	irgsp1_rep	CDS	8458772	8459197	.	-	0	Parent=Os02t0249800-01
Chr02	irgsp1_rep	three_prime_UTR	8458664	8458771	.	-	.	Parent=Os02t0249800-01
Chr02	irgsp1_rep	mRNA	8465066	8467035	.	+	.	ID=Os02t0249900-01;Name=Os02t0249900-01;Locus_id=Os02g0249900;CGSNL Gene Symbol=GLUB1;CGSNL Gene Name=GLUTELIN B1;Oryzabase Gene Symbol Synonym(s)=GluB1%2C GluB1-A%2C GluB-1%2C OsGluB1;Oryzabase Gene Name Synonym(s)=Glutelin type-B 1%2C Glutelin type-B 1 acidic chain%2C Glutelin type-B 1 basic chain;Note=Glutelin precursor.;Transcript_evidence=AK107343 (DDBJ%2C Best hit);ORF_evidence=P14323 (UniProt);GO=Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=11-S seed storage protein%2C plant (IPR006044),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),11-S seed storage protein%2C conserved site (IPR022379);NIAS_FLcDNA=002-126-G05;Oryzabase=6045;Expression=AK107343;TENOR=Os02t0249900-01;KEGG=Os02t0249900-01
Chr02	irgsp1_rep	five_prime_UTR	8465066	8465107	.	+	.	Parent=Os02t0249900-01
Chr02	irgsp1_rep	CDS	8465108	8465435	.	+	0	Parent=Os02t0249900-01
Chr02	irgsp1_rep	CDS	8465547	8465809	.	+	2	Parent=Os02t0249900-01
Chr02	irgsp1_rep	CDS	8465925	8466407	.	+	0	Parent=Os02t0249900-01
Chr02	irgsp1_rep	CDS	8466502	8466927	.	+	0	Parent=Os02t0249900-01
Chr02	irgsp1_rep	three_prime_UTR	8466928	8467035	.	+	.	Parent=Os02t0249900-01
Chr02	irgsp1_rep	mRNA	8490392	8498003	.	+	.	ID=Os02t0250300-01;Name=Os02t0250300-01;Locus_id=Os02g0250300;Oryzabase Gene Symbol Synonym(s)=GTE4%2C OsGTE4;Oryzabase Gene Name Synonym(s)=GENERAL TRANSCRIPTION FACTOR GROUP E4;Note=Bromodomain containing protein.;Transcript_evidence=AK318547 (DDBJ%2C Best hit);ORF_evidence=A3A538 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Bromodomain (IPR001487);NIAS_FLcDNA=J075125B17;Oryzabase=12400;TENOR=Os02t0250300-01;KEGG=Os02t0250300-01
Chr02	irgsp1_rep	five_prime_UTR	8490392	8490617	.	+	.	Parent=Os02t0250300-01
Chr02	irgsp1_rep	CDS	8490618	8492369	.	+	0	Parent=Os02t0250300-01
Chr02	irgsp1_rep	CDS	8492472	8492511	.	+	0	Parent=Os02t0250300-01
Chr02	irgsp1_rep	CDS	8492620	8492742	.	+	2	Parent=Os02t0250300-01
Chr02	irgsp1_rep	CDS	8492860	8492915	.	+	2	Parent=Os02t0250300-01
Chr02	irgsp1_rep	three_prime_UTR	8492916	8492918	.	+	.	Parent=Os02t0250300-01
Chr02	irgsp1_rep	three_prime_UTR	8497577	8498003	.	+	.	Parent=Os02t0250300-01
Chr02	irgsp1_rep	mRNA	8501519	8504975	.	+	.	ID=Os02t0250400-01;Name=Os02t0250400-01;Locus_id=Os02g0250400;CGSNL Gene Symbol=GELP33;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 33;Oryzabase Gene Symbol Synonym(s)=OsGELP33%2C OsGELP33a%2C OsGELP33b%2C OsGELP33c;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 33;Note=Similar to Esterase.;Transcript_evidence=AK070671 (DDBJ%2C Best hit);ORF_evidence=B4FG74 (UniProt);NIAS_FLcDNA=J023056M20;Oryzabase=10983;Expression=AK070671;TENOR=Os02t0250400-01;KEGG=Os02t0250400-01
Chr02	irgsp1_rep	five_prime_UTR	8501519	8501883	.	+	.	Parent=Os02t0250400-01
Chr02	irgsp1_rep	CDS	8501884	8502459	.	+	0	Parent=Os02t0250400-01
Chr02	irgsp1_rep	CDS	8502605	8502756	.	+	0	Parent=Os02t0250400-01
Chr02	irgsp1_rep	CDS	8502850	8502856	.	+	1	Parent=Os02t0250400-01
Chr02	irgsp1_rep	three_prime_UTR	8502857	8504975	.	+	.	Parent=Os02t0250400-01
Chr02	irgsp1_rep	mRNA	8503876	8504975	.	+	.	ID=Os02t0250400-02;Name=Os02t0250400-02;Locus_id=Os02g0250400;CGSNL Gene Symbol=GELP33;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 33;Oryzabase Gene Symbol Synonym(s)=OsGELP33%2C OsGELP33a%2C OsGELP33b%2C OsGELP33c;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 33;Note=Similar to Esterase.;Transcript_evidence=AK061300 (DDBJ%2C Best hit);ORF_evidence=B4FSK3 (UniProt);NIAS_FLcDNA=006-301-E12;Oryzabase=10983;Expression=AK061300;TENOR=Os02t0250400-02;KEGG=Os02t0250400-02
Chr02	irgsp1_rep	five_prime_UTR	8503876	8504447	.	+	.	Parent=Os02t0250400-02
Chr02	irgsp1_rep	CDS	8504448	8504705	.	+	0	Parent=Os02t0250400-02
Chr02	irgsp1_rep	three_prime_UTR	8504706	8504975	.	+	.	Parent=Os02t0250400-02
Chr02	irgsp1_rep	mRNA	8501442	8504977	.	+	.	ID=Os02t0250400-03;Name=Os02t0250400-03;Locus_id=Os02g0250400;RAP-DB Gene Symbol Synonym(s)=BS1%2C OsGELP33;RAP-DB Gene Name Synonym(s)=brittle leaf sheath1;CGSNL Gene Symbol=GELP33;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 33;Oryzabase Gene Symbol Synonym(s)=OsGELP33%2C OsGELP33a%2C OsGELP33b%2C OsGELP33c;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 33;Note=GDSL esterase%2C Xylan deacetylation%2C Control of secondary wall formation and patterning;Transcript_evidence=Inferred from literature;ORF_evidence=Q6K4Z3;GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=SGNH hydrolase superfamily (IPR036514),GDSL lipase/esterase (IPR001087),GDSL lipase/esterase-like%2C plant (IPR035669);Manual Curation=April 25%2C 2018;Literature_PMID=28260782,22793791;Oryzabase=10983;Subcellular location=Golgi apparatus (GO:0005794)
Chr02	irgsp1_rep	five_prime_UTR	8501442	8501883	.	+	.	Parent=Os02t0250400-03
Chr02	irgsp1_rep	CDS	8501884	8502154	.	+	0	Parent=Os02t0250400-03
Chr02	irgsp1_rep	CDS	8502244	8502459	.	+	2	Parent=Os02t0250400-03
Chr02	irgsp1_rep	CDS	8502605	8502756	.	+	2	Parent=Os02t0250400-03
Chr02	irgsp1_rep	CDS	8502850	8503123	.	+	0	Parent=Os02t0250400-03
Chr02	irgsp1_rep	CDS	8504470	8504705	.	+	2	Parent=Os02t0250400-03
Chr02	irgsp1_rep	three_prime_UTR	8504706	8504977	.	+	.	Parent=Os02t0250400-03
Chr02	irgsp1_rep	mRNA	8516602	8518271	.	-	.	ID=Os02t0250600-01;Name=Os02t0250600-01;Locus_id=Os02g0250600;CGSNL Gene Symbol=LEA15;CGSNL Gene Name=LATE EMBRYOGENESIS ABUNDANT PROTEIN 15;Oryzabase Gene Symbol Synonym(s)=OsLEA15;Oryzabase Gene Name Synonym(s)=late embryogenesis abundant protein 15;Note=Late embryogenesis abundant protein repeat containing protein.;Transcript_evidence=AK242097 (DDBJ%2C Best hit);ORF_evidence=NP_001046445.1 (RefSeq);NIAS_FLcDNA=J075143F23;Oryzabase=10182;TENOR=Os02t0250600-01;KEGG=Os02t0250600-01
Chr02	irgsp1_rep	five_prime_UTR	8518211	8518271	.	-	.	Parent=Os02t0250600-01
Chr02	irgsp1_rep	CDS	8516795	8518210	.	-	0	Parent=Os02t0250600-01
Chr02	irgsp1_rep	three_prime_UTR	8516602	8516794	.	-	.	Parent=Os02t0250600-01
Chr02	irgsp1_rep	mRNA	8518506	8535685	.	+	.	ID=Os02t0250700-01;Name=Os02t0250700-01;Locus_id=Os02g0250700;Note=Non-protein coding transcript.;Transcript_evidence=AK065073 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013001K10;TENOR=Os02t0250700-01
Chr02	irgsp1_rep	exon	8518506	8520746	.	+	.	Parent=Os02t0250700-01
Chr02	irgsp1_rep	exon	8526802	8527255	.	+	.	Parent=Os02t0250700-01
Chr02	irgsp1_rep	exon	8527959	8528058	.	+	.	Parent=Os02t0250700-01
Chr02	irgsp1_rep	exon	8530908	8531016	.	+	.	Parent=Os02t0250700-01
Chr02	irgsp1_rep	exon	8534883	8534998	.	+	.	Parent=Os02t0250700-01
Chr02	irgsp1_rep	exon	8535236	8535685	.	+	.	Parent=Os02t0250700-01
Chr02	irgsp1_rep	mRNA	8528062	8529234	.	+	.	ID=Os02t0251200-01;Name=Os02t0251200-01;Locus_id=Os02g0251200;Note=Non-protein coding transcript.;Transcript_evidence=AK064942 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013000P09;TENOR=Os02t0251200-01
Chr02	irgsp1_rep	exon	8528062	8529234	.	+	.	Parent=Os02t0251200-01
Chr02	irgsp1_rep	mRNA	8536374	8538452	.	+	.	ID=Os02t0251700-01;Name=Os02t0251700-01;Locus_id=Os02g0251700;Note=Conserved hypothetical protein.;Transcript_evidence=AK101906 (DDBJ%2C Best hit);ORF_evidence=A2X307 (UniProt);NIAS_FLcDNA=J033071E07;Expression=AK101906;TENOR=Os02t0251700-01;KEGG=Os02t0251700-01 (EC:3.1.3.16%2C EC:3.1.3.48)
Chr02	irgsp1_rep	five_prime_UTR	8536374	8536544	.	+	.	Parent=Os02t0251700-01
Chr02	irgsp1_rep	five_prime_UTR	8537373	8537394	.	+	.	Parent=Os02t0251700-01
Chr02	irgsp1_rep	CDS	8537395	8537821	.	+	0	Parent=Os02t0251700-01
Chr02	irgsp1_rep	CDS	8538085	8538239	.	+	2	Parent=Os02t0251700-01
Chr02	irgsp1_rep	three_prime_UTR	8538240	8538452	.	+	.	Parent=Os02t0251700-01
Chr02	irgsp1_rep	mRNA	8539273	8539623	.	-	.	ID=Os02t0251800-00;Name=Os02t0251800-00;Locus_id=Os02g0251800;Oryzabase Gene Symbol Synonym(s)=OsVQ6;Oryzabase Gene Name Synonym(s)=VQ motif-containing protein 6;Note=VQ domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001172878.1 (RefSeq);InterPro=VQ (IPR008889);Oryzabase=13622;TENOR=Os02t0251800-00;KEGG=Os02t0251800-00
Chr02	irgsp1_rep	CDS	8539273	8539623	.	-	0	Parent=Os02t0251800-00
Chr02	irgsp1_rep	mRNA	8541338	8542125	.	-	.	ID=Os02t0251900-01;Name=Os02t0251900-01;Locus_id=Os02g0251900;Oryzabase Gene Symbol Synonym(s)=OsVQ7;Oryzabase Gene Name Synonym(s)=VQ motif-containing protein 7;Note=Similar to Tobacco rattle virus-induced protein variant 2.;Transcript_evidence=AK109286 (DDBJ%2C Best hit);ORF_evidence=A2X309 (UniProt);InterPro=VQ (IPR008889);NIAS_FLcDNA=002-188-C03;Oryzabase=13623;Expression=AK109286;TENOR=Os02t0251900-01;KEGG=Os02t0251900-01
Chr02	irgsp1_rep	five_prime_UTR	8542008	8542125	.	-	.	Parent=Os02t0251900-01
Chr02	irgsp1_rep	CDS	8541627	8542007	.	-	0	Parent=Os02t0251900-01
Chr02	irgsp1_rep	three_prime_UTR	8541338	8541626	.	-	.	Parent=Os02t0251900-01
Chr02	irgsp1_rep	mRNA	8553859	8558162	.	-	.	ID=Os02t0252100-02;Name=Os02t0252100-02;Locus_id=Os02g0252100;CGSNL Gene Symbol=SCL30A;CGSNL Gene Name=SC35-LIKE PROTEIN 30A;Oryzabase Gene Symbol Synonym(s)=Os-SCL30a%2C OsSCL30a%2C SCL30a;Oryzabase Gene Name Synonym(s)=SC35-like protein 30a%2C SCL subfamily protein 30a;Note=Similar to SC35-like splicing factor SCL30%2C 30 kD.;Transcript_evidence=AK062577 (DDBJ%2C Best hit),AK099051 (DDBJ%2C Best hit);ORF_evidence=Q9FR79 (UniProt);NIAS_FLcDNA=001-047-D09,J013151F04;Oryzabase=22743;Expression=AK062577;TENOR=Os02t0252100-02;KEGG=Os02t0252100-02
Chr02	irgsp1_rep	five_prime_UTR	8558046	8558162	.	-	.	Parent=Os02t0252100-02
Chr02	irgsp1_rep	five_prime_UTR	8557184	8557191	.	-	.	Parent=Os02t0252100-02
Chr02	irgsp1_rep	CDS	8557038	8557183	.	-	0	Parent=Os02t0252100-02
Chr02	irgsp1_rep	CDS	8556600	8556677	.	-	1	Parent=Os02t0252100-02
Chr02	irgsp1_rep	CDS	8555464	8555628	.	-	1	Parent=Os02t0252100-02
Chr02	irgsp1_rep	CDS	8555338	8555378	.	-	1	Parent=Os02t0252100-02
Chr02	irgsp1_rep	CDS	8555026	8555086	.	-	2	Parent=Os02t0252100-02
Chr02	irgsp1_rep	CDS	8554743	8554925	.	-	1	Parent=Os02t0252100-02
Chr02	irgsp1_rep	CDS	8554201	8554324	.	-	1	Parent=Os02t0252100-02
Chr02	irgsp1_rep	three_prime_UTR	8553859	8554200	.	-	.	Parent=Os02t0252100-02
Chr02	irgsp1_rep	mRNA	8582543	8584532	.	+	.	ID=Os02t0252200-01;Name=Os02t0252200-01;Locus_id=Os02g0252200;CGSNL Gene Symbol=NAC13;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 13;Oryzabase Gene Symbol Synonym(s)=ONAC013%2C ONAC13%2C ONAC064%2C ONA064%2C DLN53%2C OsDLN53;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 013%2C NAC domain-containing protein 13%2C NAC domain-containing protein 64%2C DLN repressor 53%2C DLN motif protein 53;Note=Similar to GRAB2 protein.;Transcript_evidence=AK063943 (DDBJ%2C Best hit);ORF_evidence=B4FNX8 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=001-123-E07;Oryzabase=11463;Expression=AK063943;TENOR=Os02t0252200-01;KEGG=Os02t0252200-01
Chr02	irgsp1_rep	five_prime_UTR	8582543	8582773	.	+	.	Parent=Os02t0252200-01
Chr02	irgsp1_rep	five_prime_UTR	8582921	8582933	.	+	.	Parent=Os02t0252200-01
Chr02	irgsp1_rep	CDS	8582934	8583102	.	+	0	Parent=Os02t0252200-01
Chr02	irgsp1_rep	CDS	8583276	8583553	.	+	2	Parent=Os02t0252200-01
Chr02	irgsp1_rep	CDS	8583663	8584295	.	+	0	Parent=Os02t0252200-01
Chr02	irgsp1_rep	three_prime_UTR	8584296	8584532	.	+	.	Parent=Os02t0252200-01
Chr02	irgsp1_rep	mRNA	8582647	8584532	.	+	.	ID=Os02t0252200-02;Name=Os02t0252200-02;Locus_id=Os02g0252200;CGSNL Gene Symbol=NAC13;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 13;Oryzabase Gene Symbol Synonym(s)=ONAC013%2C ONAC13%2C ONAC064%2C ONA064%2C DLN53%2C OsDLN53;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 013%2C NAC domain-containing protein 13%2C NAC domain-containing protein 64%2C DLN repressor 53%2C DLN motif protein 53;Note=Similar to GRAB2 protein.;Transcript_evidence=AK101280 (DDBJ%2C Best hit);ORF_evidence=B4FNX8 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=J033033C18;Oryzabase=11463;Expression=AK101280;TENOR=Os02t0252200-02;KEGG=Os02t0252200-02
Chr02	irgsp1_rep	five_prime_UTR	8582647	8582773	.	+	.	Parent=Os02t0252200-02
Chr02	irgsp1_rep	five_prime_UTR	8582921	8582933	.	+	.	Parent=Os02t0252200-02
Chr02	irgsp1_rep	CDS	8582934	8583102	.	+	0	Parent=Os02t0252200-02
Chr02	irgsp1_rep	CDS	8583276	8583553	.	+	2	Parent=Os02t0252200-02
Chr02	irgsp1_rep	CDS	8583663	8584295	.	+	0	Parent=Os02t0252200-02
Chr02	irgsp1_rep	three_prime_UTR	8584296	8584532	.	+	.	Parent=Os02t0252200-02
Chr02	irgsp1_rep	mRNA	8584813	8585532	.	+	.	ID=Os02t0252300-01;Name=Os02t0252300-01;Locus_id=Os02g0252300;Note=Hypothetical protein.;Transcript_evidence=AK102101 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033083P04;TENOR=Os02t0252300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	8584813	8584813	.	+	.	Parent=Os02t0252300-01
Chr02	irgsp1_rep	CDS	8584814	8585167	.	+	0	Parent=Os02t0252300-01
Chr02	irgsp1_rep	three_prime_UTR	8585168	8585532	.	+	.	Parent=Os02t0252300-01
Chr02	irgsp1_rep	mRNA	8590318	8593735	.	-	.	ID=Os02t0252400-01;Name=Os02t0252400-01;Locus_id=Os02g0252400;RAP-DB Gene Symbol Synonym(s)=RPBF%2C OsDof3%2C OsDOF3%2C OsEnS-34%2C OsDof10%2C Dof10%2C OsDof-10%2C OsDOF1%2C DOF1%2C DOF3;RAP-DB Gene Name Synonym(s)=PROLAMIN BOX BINDING FACTOR%2C rice (Oryza sativa) prolamin box binding factor%2C pyrimidine box-binding protein%2C endosperm-specific gene 34%2C Dof zinc factor 10%2C Dof transcription factor 10%2C DNA BINDING WITH ONE FINGER 10;CGSNL Gene Symbol=RPBF;CGSNL Gene Name=PROLAMIN BOX BINDING FACTOR;Oryzabase Gene Symbol Synonym(s)=OsDof3%2C OsDOF3%2C OsEnS-34%2C OsDof10%2C Dof10%2C OsDof-10%2C OsDOF1%2C DOF1%2C DOF3%2C OsRPBF;Oryzabase Gene Name Synonym(s)=rice (Oryza sativa) prolamin box binding factor%2C pyrimidine box-binding protein%2C endosperm-specific gene 34%2C Dof zinc factor 10%2C Dof transcription factor 10%2C DNA BINDING WITH ONE FINGER 10;Note=Dof zinc finger transcriptional activator%2C Dof zinc finger transcription factor%2C Grain filling%2C GA response in aleurone cell;Transcript_evidence=AK107294 (Genbank),AB028131 (Genbank);ORF_evidence=Q6K537 (UniProt),Q9SXG6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C Dof-type (IPR003851);NIAS_FLcDNA=002-126-C02;Manual Curation=September 28%2C 2009;Literature_PMID=16798940,19473328,11470159,14500792,12475498,15111712,17052766;Oryzabase=7469;Expression=AK107294,AB028131;TENOR=Os02t0252400-01;KEGG=Os02t0252400-01
Chr02	irgsp1_rep	five_prime_UTR	8593650	8593735	.	-	.	Parent=Os02t0252400-01
Chr02	irgsp1_rep	five_prime_UTR	8591759	8591768	.	-	.	Parent=Os02t0252400-01
Chr02	irgsp1_rep	CDS	8590637	8591758	.	-	0	Parent=Os02t0252400-01
Chr02	irgsp1_rep	three_prime_UTR	8590318	8590636	.	-	.	Parent=Os02t0252400-01
Chr02	irgsp1_rep	mRNA	8597167	8601679	.	-	.	ID=Os02t0252600-01;Name=Os02t0252600-01;Locus_id=Os02g0252600;Note=Aminotransferase%2C class IV family protein.;Transcript_evidence=AK121113 (DDBJ%2C Best hit);ORF_evidence=XP_002441656.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Aminotransferase%2C class IV (IPR001544);NIAS_FLcDNA=J023073I18;Expression=AK121113;TENOR=Os02t0252600-01;KEGG=Os02t0252600-01
Chr02	irgsp1_rep	five_prime_UTR	8601678	8601679	.	-	.	Parent=Os02t0252600-01
Chr02	irgsp1_rep	CDS	8601187	8601677	.	-	0	Parent=Os02t0252600-01
Chr02	irgsp1_rep	CDS	8600868	8601081	.	-	1	Parent=Os02t0252600-01
Chr02	irgsp1_rep	three_prime_UTR	8600790	8600867	.	-	.	Parent=Os02t0252600-01
Chr02	irgsp1_rep	three_prime_UTR	8600565	8600686	.	-	.	Parent=Os02t0252600-01
Chr02	irgsp1_rep	three_prime_UTR	8600080	8600165	.	-	.	Parent=Os02t0252600-01
Chr02	irgsp1_rep	three_prime_UTR	8599865	8599974	.	-	.	Parent=Os02t0252600-01
Chr02	irgsp1_rep	three_prime_UTR	8599746	8599775	.	-	.	Parent=Os02t0252600-01
Chr02	irgsp1_rep	three_prime_UTR	8597586	8599519	.	-	.	Parent=Os02t0252600-01
Chr02	irgsp1_rep	three_prime_UTR	8597167	8597411	.	-	.	Parent=Os02t0252600-01
Chr02	irgsp1_rep	mRNA	8612484	8613769	.	+	.	ID=Os02t0253150-01;Name=Os02t0253150-01;Locus_id=Os02g0253150;Note=Glycosyl transferase%2C family 20 domain containing protein.;Transcript_evidence=AK241319 (DDBJ%2C Best hit);ORF_evidence=B8BAS6 (UniProt);GO=Biological Process: trehalose biosynthetic process (GO:0005992),Molecular Function: catalytic activity (GO:0003824);InterPro=Glycosyl transferase%2C family 20 (IPR001830);NIAS_FLcDNA=J065142F08;TENOR=Os02t0253150-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	8612484	8612913	.	+	.	Parent=Os02t0253150-01
Chr02	irgsp1_rep	five_prime_UTR	8613002	8613632	.	+	.	Parent=Os02t0253150-01
Chr02	irgsp1_rep	CDS	8613633	8613769	.	+	0	Parent=Os02t0253150-01
Chr02	irgsp1_rep	mRNA	8643576	8644850	.	-	.	ID=Os02t0253502-00;Name=Os02t0253502-00;Locus_id=Os02g0253502;Note=Protein of unknown function DUF247%2C plant domain containing protein.;Transcript_evidence=EU975866 (DDBJ);ORF_evidence=B9F4U3 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);TENOR=Os02t0253502-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	8643837	8644850	.	-	0	Parent=Os02t0253502-00
Chr02	irgsp1_rep	three_prime_UTR	8643576	8643836	.	-	.	Parent=Os02t0253502-00
Chr02	irgsp1_rep	mRNA	8649792	8650152	.	+	.	ID=Os02t0253601-00;Name=Os02t0253601-00;Locus_id=Os02g0253601;Note=EF-hand-like domain domain containing protein.;Transcript_evidence=Y13974 (DDBJ);ORF_evidence=A2X2R4 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand-like domain (IPR011992);TENOR=Os02t0253601-00
Chr02	irgsp1_rep	CDS	8649792	8649950	.	+	0	Parent=Os02t0253601-00
Chr02	irgsp1_rep	three_prime_UTR	8649951	8650152	.	+	.	Parent=Os02t0253601-00
Chr02	irgsp1_rep	mRNA	8659226	8660521	.	-	.	ID=Os02t0253700-01;Name=Os02t0253700-01;Locus_id=Os02g0253700;Note=Conserved hypothetical protein.;Transcript_evidence=AK072542 (DDBJ%2C Best hit);ORF_evidence=B9F4U4 (UniProt);NIAS_FLcDNA=J023132O14;Expression=AK072542;TENOR=Os02t0253700-01;KEGG=Os02t0253700-01
Chr02	irgsp1_rep	five_prime_UTR	8660420	8660521	.	-	.	Parent=Os02t0253700-01
Chr02	irgsp1_rep	CDS	8660266	8660419	.	-	0	Parent=Os02t0253700-01
Chr02	irgsp1_rep	CDS	8659899	8660174	.	-	2	Parent=Os02t0253700-01
Chr02	irgsp1_rep	CDS	8659347	8659810	.	-	2	Parent=Os02t0253700-01
Chr02	irgsp1_rep	three_prime_UTR	8659226	8659346	.	-	.	Parent=Os02t0253700-01
Chr02	irgsp1_rep	mRNA	8661700	8662302	.	-	.	ID=Os02t0253800-01;Name=Os02t0253800-01;Locus_id=Os02g0253800;Note=Conserved hypothetical protein.;Transcript_evidence=AK100734 (DDBJ%2C Best hit);ORF_evidence=B9F4U5 (UniProt);NIAS_FLcDNA=J023117P06;TENOR=Os02t0253800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	8662014	8662302	.	-	.	Parent=Os02t0253800-01
Chr02	irgsp1_rep	CDS	8661852	8662013	.	-	0	Parent=Os02t0253800-01
Chr02	irgsp1_rep	three_prime_UTR	8661700	8661851	.	-	.	Parent=Os02t0253800-01
Chr02	irgsp1_rep	mRNA	8679389	8680699	.	+	.	ID=Os02t0254100-00;Name=Os02t0254100-00;Locus_id=Os02g0254100;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001172880.1 (RefSeq);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);TENOR=Os02t0254100-00;KEGG=Os02t0254100-00
Chr02	irgsp1_rep	CDS	8679389	8680699	.	+	0	Parent=Os02t0254100-00
Chr02	irgsp1_rep	mRNA	8679431	8680629	.	-	.	ID=Os02t0254233-00;Name=Os02t0254233-00;Locus_id=Os02g0254233;Note=Hypothetical protein.;Transcript_evidence=EU956917 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0254233-00
Chr02	irgsp1_rep	five_prime_UTR	8680628	8680629	.	-	.	Parent=Os02t0254233-00
Chr02	irgsp1_rep	CDS	8679986	8680627	.	-	0	Parent=Os02t0254233-00
Chr02	irgsp1_rep	three_prime_UTR	8679431	8679985	.	-	.	Parent=Os02t0254233-00
Chr02	irgsp1_rep	mRNA	8693806	8694177	.	-	.	ID=Os02t0254366-00;Name=Os02t0254366-00;Locus_id=Os02g0254366;Note=EF-hand-like domain domain containing protein.;Transcript_evidence=FP099223 (DDBJ);ORF_evidence=Q6ET07 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand-like domain (IPR011992),EF-HAND 2 (IPR018249);TENOR=Os02t0254366-00
Chr02	irgsp1_rep	CDS	8694019	8694177	.	-	0	Parent=Os02t0254366-00
Chr02	irgsp1_rep	three_prime_UTR	8693806	8694018	.	-	.	Parent=Os02t0254366-00
Chr02	irgsp1_rep	mRNA	8700431	8702895	.	-	.	ID=Os02t0254550-01;Name=Os02t0254550-01;Locus_id=Os02g0254550;Note=Zinc finger%2C BED-type predicted domain containing protein.;Transcript_evidence=AK288028 (DDBJ%2C Best hit);ORF_evidence=NP_001172881.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Zinc finger%2C BED-type predicted (IPR003656),HAT dimerisation (IPR008906),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J075133H10;TENOR=Os02t0254550-01;KEGG=Os02t0254550-01
Chr02	irgsp1_rep	five_prime_UTR	8702516	8702895	.	-	.	Parent=Os02t0254550-01
Chr02	irgsp1_rep	CDS	8700659	8702515	.	-	0	Parent=Os02t0254550-01
Chr02	irgsp1_rep	three_prime_UTR	8700431	8700658	.	-	.	Parent=Os02t0254550-01
Chr02	irgsp1_rep	mRNA	8714222	8715050	.	-	.	ID=Os02t0254600-01;Name=Os02t0254600-01;Locus_id=Os02g0254600;Note=Conserved hypothetical protein.;Transcript_evidence=AK063627 (DDBJ%2C Best hit);ORF_evidence=B8AF87 (UniProt);NIAS_FLcDNA=001-118-F03;Expression=AK063627;TENOR=Os02t0254600-01;KEGG=Os02t0254600-01
Chr02	irgsp1_rep	five_prime_UTR	8714975	8715050	.	-	.	Parent=Os02t0254600-01
Chr02	irgsp1_rep	CDS	8714738	8714974	.	-	0	Parent=Os02t0254600-01
Chr02	irgsp1_rep	CDS	8714556	8714615	.	-	0	Parent=Os02t0254600-01
Chr02	irgsp1_rep	three_prime_UTR	8714222	8714555	.	-	.	Parent=Os02t0254600-01
Chr02	irgsp1_rep	mRNA	8726689	8730601	.	-	.	ID=Os02t0254700-01;Name=Os02t0254700-01;Locus_id=Os02g0254700;CGSNL Gene Symbol=SPMS2;CGSNL Gene Name=SPERMINE SYNTHASE 2;Oryzabase Gene Symbol Synonym(s)=OsSPMS2%2C OsSPDS3%2C SPDS3;Oryzabase Gene Name Synonym(s)=spermine synthase 2%2C spermidine/spermine synthase 2%2C Spermidine synthase 3;Note=Similar to Spermidine synthase 3.;Transcript_evidence=AK065153 (DDBJ%2C Best hit);ORF_evidence=B3GPG7 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Spermine synthase (IPR001045);NIAS_FLcDNA=J013002B15;Oryzabase=21669;TENOR=Os02t0254700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	8730501	8730601	.	-	.	Parent=Os02t0254700-01
Chr02	irgsp1_rep	five_prime_UTR	8730335	8730365	.	-	.	Parent=Os02t0254700-01
Chr02	irgsp1_rep	CDS	8730115	8730334	.	-	0	Parent=Os02t0254700-01
Chr02	irgsp1_rep	CDS	8729965	8730009	.	-	2	Parent=Os02t0254700-01
Chr02	irgsp1_rep	CDS	8729631	8729707	.	-	2	Parent=Os02t0254700-01
Chr02	irgsp1_rep	CDS	8728988	8729017	.	-	0	Parent=Os02t0254700-01
Chr02	irgsp1_rep	CDS	8728852	8728866	.	-	0	Parent=Os02t0254700-01
Chr02	irgsp1_rep	three_prime_UTR	8728795	8728851	.	-	.	Parent=Os02t0254700-01
Chr02	irgsp1_rep	three_prime_UTR	8728307	8728502	.	-	.	Parent=Os02t0254700-01
Chr02	irgsp1_rep	three_prime_UTR	8727737	8727866	.	-	.	Parent=Os02t0254700-01
Chr02	irgsp1_rep	three_prime_UTR	8727361	8727435	.	-	.	Parent=Os02t0254700-01
Chr02	irgsp1_rep	three_prime_UTR	8726689	8727002	.	-	.	Parent=Os02t0254700-01
Chr02	irgsp1_rep	mRNA	8747058	8756024	.	-	.	ID=Os02t0255000-01;Name=Os02t0255000-01;Locus_id=Os02g0255000;CGSNL Gene Symbol=CNGC2;CGSNL Gene Name=CYCLIC NUCLEOTIDE GATED CHANNEL 2;Oryzabase Gene Symbol Synonym(s)=OsCNGC2%2C OsCNGC1;Oryzabase Gene Name Synonym(s)=Cyclic nucleotide gated channel 2%2C Cyclic nucleotide-gated ion channel 1;Note=Similar to Cyclic nucleotide-gated ion channel 1.;Transcript_evidence=AK100312 (DDBJ%2C Best hit);ORF_evidence=B6U0R1 (UniProt);NIAS_FLcDNA=J023078M02;Oryzabase=15475;TENOR=Os02t0255000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	8755639	8756024	.	-	.	Parent=Os02t0255000-01
Chr02	irgsp1_rep	five_prime_UTR	8754801	8754890	.	-	.	Parent=Os02t0255000-01
Chr02	irgsp1_rep	CDS	8754772	8754800	.	-	0	Parent=Os02t0255000-01
Chr02	irgsp1_rep	CDS	8754006	8754537	.	-	1	Parent=Os02t0255000-01
Chr02	irgsp1_rep	CDS	8752933	8753145	.	-	0	Parent=Os02t0255000-01
Chr02	irgsp1_rep	CDS	8751053	8751439	.	-	0	Parent=Os02t0255000-01
Chr02	irgsp1_rep	three_prime_UTR	8750962	8751052	.	-	.	Parent=Os02t0255000-01
Chr02	irgsp1_rep	three_prime_UTR	8750315	8750551	.	-	.	Parent=Os02t0255000-01
Chr02	irgsp1_rep	three_prime_UTR	8747058	8748125	.	-	.	Parent=Os02t0255000-01
Chr02	irgsp1_rep	mRNA	8749822	8755901	.	-	.	ID=Os02t0255000-02;Name=Os02t0255000-02;Locus_id=Os02g0255000;CGSNL Gene Symbol=CNGC2;CGSNL Gene Name=CYCLIC NUCLEOTIDE GATED CHANNEL 2;Oryzabase Gene Symbol Synonym(s)=OsCNGC2%2C OsCNGC1;Oryzabase Gene Name Synonym(s)=Cyclic nucleotide gated channel 2%2C Cyclic nucleotide-gated ion channel 1;Note=Similar to cyclic nucleotide-gated ion channel 1.;Transcript_evidence=AK065296 (DDBJ%2C Best hit);ORF_evidence=B6U0R1 (UniProt);GO=Biological Process: ion transport (GO:0006811),Biological Process: potassium ion transport (GO:0006813),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: ion channel activity (GO:0005216),Molecular Function: voltage-gated potassium channel activity (GO:0005249);InterPro=Potassium channel%2C voltage-dependent%2C EAG/ELK/ERG (IPR003938),Ion transport (IPR005821),Cyclic nucleotide-binding-like (IPR018490);NIAS_FLcDNA=J013002N14;Oryzabase=15475;Expression=AK065296;TENOR=Os02t0255000-02;KEGG=Os02t0255000-02
Chr02	irgsp1_rep	five_prime_UTR	8755639	8755901	.	-	.	Parent=Os02t0255000-02
Chr02	irgsp1_rep	five_prime_UTR	8754801	8754890	.	-	.	Parent=Os02t0255000-02
Chr02	irgsp1_rep	CDS	8754772	8754800	.	-	0	Parent=Os02t0255000-02
Chr02	irgsp1_rep	CDS	8754006	8754537	.	-	1	Parent=Os02t0255000-02
Chr02	irgsp1_rep	CDS	8752933	8753145	.	-	0	Parent=Os02t0255000-02
Chr02	irgsp1_rep	CDS	8751159	8751439	.	-	0	Parent=Os02t0255000-02
Chr02	irgsp1_rep	CDS	8750962	8751073	.	-	1	Parent=Os02t0255000-02
Chr02	irgsp1_rep	CDS	8750291	8750551	.	-	0	Parent=Os02t0255000-02
Chr02	irgsp1_rep	three_prime_UTR	8749822	8750290	.	-	.	Parent=Os02t0255000-02
Chr02	irgsp1_rep	mRNA	8747018	8751031	.	-	.	ID=Os02t0255000-03;Name=Os02t0255000-03;Locus_id=Os02g0255000;CGSNL Gene Symbol=CNGC2;CGSNL Gene Name=CYCLIC NUCLEOTIDE GATED CHANNEL 2;Oryzabase Gene Symbol Synonym(s)=OsCNGC2%2C OsCNGC1;Oryzabase Gene Name Synonym(s)=Cyclic nucleotide gated channel 2%2C Cyclic nucleotide-gated ion channel 1;Note=Similar to Cyclic nucleotide-gated ion channel 1.;Transcript_evidence=AK112041 (DDBJ%2C Best hit);ORF_evidence=B6U0R1 (UniProt);InterPro=Cyclic nucleotide-binding domain (IPR000595),RmlC-like jelly roll fold (IPR014710),Cyclic nucleotide-binding-like (IPR018490);NIAS_FLcDNA=001-044-H11;Oryzabase=15475;TENOR=Os02t0255000-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	8751031	8751031	.	-	.	Parent=Os02t0255000-03
Chr02	irgsp1_rep	CDS	8750962	8751030	.	-	0	Parent=Os02t0255000-03
Chr02	irgsp1_rep	CDS	8750315	8750551	.	-	0	Parent=Os02t0255000-03
Chr02	irgsp1_rep	CDS	8747427	8748125	.	-	0	Parent=Os02t0255000-03
Chr02	irgsp1_rep	three_prime_UTR	8747018	8747426	.	-	.	Parent=Os02t0255000-03
Chr02	irgsp1_rep	mRNA	8747655	8754363	.	+	.	ID=Os02t0255033-00;Name=Os02t0255033-00;Locus_id=Os02g0255033;Note=Hypothetical protein.;Transcript_evidence=tplb0059d04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0255033-00
Chr02	irgsp1_rep	five_prime_UTR	8747655	8747994	.	+	.	Parent=Os02t0255033-00
Chr02	irgsp1_rep	CDS	8747995	8748134	.	+	0	Parent=Os02t0255033-00
Chr02	irgsp1_rep	CDS	8750327	8750435	.	+	1	Parent=Os02t0255033-00
Chr02	irgsp1_rep	three_prime_UTR	8750436	8750643	.	+	.	Parent=Os02t0255033-00
Chr02	irgsp1_rep	three_prime_UTR	8751113	8751464	.	+	.	Parent=Os02t0255033-00
Chr02	irgsp1_rep	three_prime_UTR	8754021	8754363	.	+	.	Parent=Os02t0255033-00
Chr02	irgsp1_rep	mRNA	8760061	8760449	.	-	.	ID=Os02t0255066-00;Name=Os02t0255066-00;Locus_id=Os02g0255066;Note=Hypothetical protein.;Transcript_evidence=EU949664 (DDBJ);ORF_evidence=GeneMark;TENOR=Os02t0255066-00
Chr02	irgsp1_rep	five_prime_UTR	8760449	8760449	.	-	.	Parent=Os02t0255066-00
Chr02	irgsp1_rep	CDS	8760061	8760448	.	-	0	Parent=Os02t0255066-00
Chr02	irgsp1_rep	mRNA	8760067	8766268	.	+	.	ID=Os02t0255100-01;Name=Os02t0255100-01;Locus_id=Os02g0255100;RAP-DB Gene Symbol Synonym(s)=DCW11%2C DCW11%2C OsPP2C13%2C PP2C13%2C OsPP22;RAP-DB Gene Name Synonym(s)=DOWN-REGULATED GENE 11%2C Probable protein phosphatase 2C 13%2C protein phosphatase 2C 13%2C protein phosphatase 2C13%2C protein phosphatase 22;CGSNL Gene Symbol=DCW11;CGSNL Gene Name=DOWN-REGULATED GENE 11;Oryzabase Gene Symbol Synonym(s)=DCW11%2C OsPP2C13%2C PP2C13%2C OsPP22;Oryzabase Gene Name Synonym(s)=Probable protein phosphatase 2C 13%2C protein phosphatase 2C 13%2C protein phosphatase 2C13%2C protein phosphatase 22;Note=Mitochondrial protein phosphatase 2C protein 13%2C Pollen germination;Transcript_evidence=AK069289 (Genbank);ORF_evidence=Q6EN45 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J023012I24;Manual Curation=June 4%2C 2009;Literature_PMID=18308761,19021904;Oryzabase=8232;Expression=AK069289;TENOR=Os02t0255100-01;KEGG=Os02t0255100-01 (EC:3.1.3.16)
Chr02	irgsp1_rep	five_prime_UTR	8760067	8760130	.	+	.	Parent=Os02t0255100-01
Chr02	irgsp1_rep	CDS	8760131	8760444	.	+	0	Parent=Os02t0255100-01
Chr02	irgsp1_rep	CDS	8763776	8763903	.	+	1	Parent=Os02t0255100-01
Chr02	irgsp1_rep	CDS	8763983	8764081	.	+	2	Parent=Os02t0255100-01
Chr02	irgsp1_rep	CDS	8764197	8764355	.	+	2	Parent=Os02t0255100-01
Chr02	irgsp1_rep	CDS	8764936	8765022	.	+	2	Parent=Os02t0255100-01
Chr02	irgsp1_rep	CDS	8765259	8765350	.	+	2	Parent=Os02t0255100-01
Chr02	irgsp1_rep	CDS	8765567	8765641	.	+	0	Parent=Os02t0255100-01
Chr02	irgsp1_rep	CDS	8765817	8765954	.	+	0	Parent=Os02t0255100-01
Chr02	irgsp1_rep	three_prime_UTR	8765955	8766268	.	+	.	Parent=Os02t0255100-01
Chr02	irgsp1_rep	mRNA	8764964	8766208	.	+	.	ID=Os02t0255100-02;Name=Os02t0255100-02;Locus_id=Os02g0255100;CGSNL Gene Symbol=DCW11;CGSNL Gene Name=DOWN-REGULATED GENE 11;Oryzabase Gene Symbol Synonym(s)=DCW11%2C OsPP2C13%2C PP2C13%2C OsPP22;Oryzabase Gene Name Synonym(s)=Probable protein phosphatase 2C 13%2C protein phosphatase 2C 13%2C protein phosphatase 2C13%2C protein phosphatase 22;Note=Similar to Catalytic/ protein phosphatase type 2C/ protein serine/threonine phosphatase.;Transcript_evidence=AK060458 (DDBJ%2C Best hit);ORF_evidence=B6TEB8 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=001-012-A11;Oryzabase=8232;Expression=AK060458;TENOR=Os02t0255100-02;KEGG=Os02t0255100-02 (EC:3.1.3.16)
Chr02	irgsp1_rep	five_prime_UTR	8764964	8764964	.	+	.	Parent=Os02t0255100-02
Chr02	irgsp1_rep	CDS	8764965	8765022	.	+	0	Parent=Os02t0255100-02
Chr02	irgsp1_rep	CDS	8765259	8765350	.	+	2	Parent=Os02t0255100-02
Chr02	irgsp1_rep	CDS	8765567	8765641	.	+	0	Parent=Os02t0255100-02
Chr02	irgsp1_rep	CDS	8765817	8765954	.	+	0	Parent=Os02t0255100-02
Chr02	irgsp1_rep	three_prime_UTR	8765955	8766208	.	+	.	Parent=Os02t0255100-02
Chr02	irgsp1_rep	mRNA	8766970	8769279	.	-	.	ID=Os02t0255200-01;Name=Os02t0255200-01;Locus_id=Os02g0255200;Note=Similar to Ribosomal protein S15a homolog.;Transcript_evidence=AK121591 (DDBJ%2C Best hit);ORF_evidence=B6U773 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S8 (IPR000630);NIAS_FLcDNA=J033037P22;Expression=AK121591;TENOR=Os02t0255200-01;KEGG=Os02t0255200-01
Chr02	irgsp1_rep	five_prime_UTR	8769191	8769279	.	-	.	Parent=Os02t0255200-01
Chr02	irgsp1_rep	CDS	8769061	8769190	.	-	0	Parent=Os02t0255200-01
Chr02	irgsp1_rep	CDS	8768013	8768173	.	-	2	Parent=Os02t0255200-01
Chr02	irgsp1_rep	CDS	8767165	8767263	.	-	0	Parent=Os02t0255200-01
Chr02	irgsp1_rep	three_prime_UTR	8766970	8767164	.	-	.	Parent=Os02t0255200-01
Chr02	irgsp1_rep	mRNA	8766855	8767267	.	-	.	ID=Os02t0255200-02;Name=Os02t0255200-02;Locus_id=Os02g0255200;Note=Similar to 40S ribosomal protein S15a.;Transcript_evidence=AK063840 (DDBJ%2C Best hit);ORF_evidence=B6U773 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S8 (IPR000630);NIAS_FLcDNA=001-122-B12;Expression=AK063840;TENOR=Os02t0255200-02;KEGG=Os02t0255200-02
Chr02	irgsp1_rep	five_prime_UTR	8767267	8767267	.	-	.	Parent=Os02t0255200-02
Chr02	irgsp1_rep	CDS	8767165	8767266	.	-	0	Parent=Os02t0255200-02
Chr02	irgsp1_rep	three_prime_UTR	8766855	8767164	.	-	.	Parent=Os02t0255200-02
Chr02	irgsp1_rep	mRNA	8775492	8781696	.	+	.	ID=Os02t0255300-00;Name=Os02t0255300-00;Locus_id=Os02g0255300;CGSNL Gene Symbol=PYL/RCAR11;CGSNL Gene Name=PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 11;Oryzabase Gene Symbol Synonym(s)=OsPYL/RCAR11%2C OsPYL12%2C PYL12%2C OsPYL11%2C PYL11;Oryzabase Gene Name Synonym(s)=pyrabactin resistance-like 11%2C PYR1-like 12%2C pyrabactin resistance 1-like 12;Note=Similar to Polyketide cyclase.;Transcript_evidence=BT041157 (DDBJ);ORF_evidence=A2X334 (UniProt);InterPro=Polyketide cyclase/dehydrase (IPR019587),START-like domain (IPR023393);Oryzabase=18098;TENOR=Os02t0255300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	8775492	8775590	.	+	0	Parent=Os02t0255300-00
Chr02	irgsp1_rep	CDS	8779575	8779796	.	+	0	Parent=Os02t0255300-00
Chr02	irgsp1_rep	CDS	8781402	8781623	.	+	0	Parent=Os02t0255300-00
Chr02	irgsp1_rep	three_prime_UTR	8781624	8781696	.	+	.	Parent=Os02t0255300-00
Chr02	irgsp1_rep	mRNA	8791270	8792098	.	+	.	ID=Os02t0255400-00;Name=Os02t0255400-00;Locus_id=Os02g0255400;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);InterPro=Ribonuclease H1%2C N-terminal (IPR011320);TENOR=Os02t0255400-00
Chr02	irgsp1_rep	five_prime_UTR	8791270	8791273	.	+	.	Parent=Os02t0255400-00
Chr02	irgsp1_rep	CDS	8791274	8792098	.	+	0	Parent=Os02t0255400-00
Chr02	irgsp1_rep	mRNA	8801325	8805273	.	+	.	ID=Os02t0255500-01;Name=Os02t0255500-01;Locus_id=Os02g0255500;RAP-DB Gene Symbol Synonym(s)=OsPYL10%2C OsPYL/RCAR3%2C OsPYL3%2C OsRCAR1;RAP-DB Gene Name Synonym(s)=pyrabactin resistance-like 3;CGSNL Gene Symbol=PYL/RCAR3;CGSNL Gene Name=PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 3;Oryzabase Gene Symbol Synonym(s)=OsPYL/RCAR3%2C PYL3%2C OsPYL3%2C OsPYL10%2C PYL10%2C OsRCAR1%2C RCAR1;Oryzabase Gene Name Synonym(s)=pyrabactin resistance-like 3%2C PYR1-like 10%2C pyrabactin resistance 1-like 10;Note=ABA receptor%2C Pyrabactin resistance-like (PYL) abscisic acid receptor family protein%2C Cold and drought stress tolerance%2C ABA-mediated inhibition of seed germination;Transcript_evidence=AK064805,AK059303,AK104581;ORF_evidence=Q6EN42;InterPro=START-like domain superfamily (IPR023393),Polyketide cyclase/dehydrase (IPR019587);NIAS_FLcDNA=J013000D15,001-025-F10,006-307-B12;Manual Curation=January 22%2C 2020;Literature_PMID=31850010,29574592,26362328;Oryzabase=17871;Expression=AK064805;TENOR=Os02t0255500-01;KEGG=Os02t0255500-01;Subcellular location=cytosol (GO:0005829), nucleus (GO:0005634)
Chr02	irgsp1_rep	five_prime_UTR	8801325	8801491	.	+	.	Parent=Os02t0255500-01
Chr02	irgsp1_rep	CDS	8801492	8801674	.	+	0	Parent=Os02t0255500-01
Chr02	irgsp1_rep	CDS	8802866	8803081	.	+	0	Parent=Os02t0255500-01
Chr02	irgsp1_rep	CDS	8804858	8805073	.	+	0	Parent=Os02t0255500-01
Chr02	irgsp1_rep	three_prime_UTR	8805074	8805273	.	+	.	Parent=Os02t0255500-01
Chr02	irgsp1_rep	mRNA	8810169	8820960	.	-	.	ID=Os02t0255700-01;Name=Os02t0255700-01;Locus_id=Os02g0255700;Oryzabase Gene Symbol Synonym(s)=FLL1;Oryzabase Gene Name Synonym(s)=FLO2-LIKE1;Note=Conserved hypothetical protein.;Transcript_evidence=AK067390 (DDBJ%2C Best hit);ORF_evidence=Q6EN40 (UniProt);NIAS_FLcDNA=J013103F03;Oryzabase=19293;Expression=AK067390;TENOR=Os02t0255700-01;KEGG=Os02t0255700-01
Chr02	irgsp1_rep	five_prime_UTR	8820712	8820960	.	-	.	Parent=Os02t0255700-01
Chr02	irgsp1_rep	CDS	8820642	8820711	.	-	0	Parent=Os02t0255700-01
Chr02	irgsp1_rep	CDS	8820342	8820403	.	-	2	Parent=Os02t0255700-01
Chr02	irgsp1_rep	CDS	8819327	8819419	.	-	0	Parent=Os02t0255700-01
Chr02	irgsp1_rep	CDS	8819164	8819236	.	-	0	Parent=Os02t0255700-01
Chr02	irgsp1_rep	CDS	8818760	8819071	.	-	2	Parent=Os02t0255700-01
Chr02	irgsp1_rep	CDS	8818541	8818605	.	-	2	Parent=Os02t0255700-01
Chr02	irgsp1_rep	CDS	8818105	8818236	.	-	0	Parent=Os02t0255700-01
Chr02	irgsp1_rep	CDS	8817979	8818020	.	-	0	Parent=Os02t0255700-01
Chr02	irgsp1_rep	CDS	8817115	8817645	.	-	0	Parent=Os02t0255700-01
Chr02	irgsp1_rep	CDS	8816866	8817026	.	-	0	Parent=Os02t0255700-01
Chr02	irgsp1_rep	CDS	8816549	8816610	.	-	1	Parent=Os02t0255700-01
Chr02	irgsp1_rep	CDS	8810626	8810960	.	-	2	Parent=Os02t0255700-01
Chr02	irgsp1_rep	three_prime_UTR	8810169	8810625	.	-	.	Parent=Os02t0255700-01
Chr02	irgsp1_rep	mRNA	8810104	8811035	.	-	.	ID=Os02t0255700-02;Name=Os02t0255700-02;Locus_id=Os02g0255700;Oryzabase Gene Symbol Synonym(s)=FLL1;Oryzabase Gene Name Synonym(s)=FLO2-LIKE1;Note=Hypothetical conserved gene.;Transcript_evidence=AK060468 (DDBJ%2C Best hit);ORF_evidence=A3A568 (UniProt);NIAS_FLcDNA=001-012-D08;Oryzabase=19293;Expression=AK060468;TENOR=Os02t0255700-02;KEGG=Os02t0255700-02
Chr02	irgsp1_rep	five_prime_UTR	8811034	8811035	.	-	.	Parent=Os02t0255700-02
Chr02	irgsp1_rep	CDS	8810626	8811033	.	-	0	Parent=Os02t0255700-02
Chr02	irgsp1_rep	three_prime_UTR	8810104	8810625	.	-	.	Parent=Os02t0255700-02
Chr02	irgsp1_rep	mRNA	8813629	8814915	.	+	.	ID=Os02t0255801-00;Name=Os02t0255801-00;Locus_id=Os02g0255801;Note=Non-protein coding transcript.;Transcript_evidence=BT069793 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0255801-00
Chr02	irgsp1_rep	exon	8813629	8814114	.	+	.	Parent=Os02t0255801-00
Chr02	irgsp1_rep	exon	8814169	8814915	.	+	.	Parent=Os02t0255801-00
Chr02	irgsp1_rep	mRNA	8825029	8825614	.	+	.	ID=Os02t0255900-01;Name=Os02t0255900-01;Locus_id=Os02g0255900;Note=Conserved hypothetical protein.;Transcript_evidence=AK241173 (DDBJ%2C Best hit);ORF_evidence=NP_001046466.2 (RefSeq);NIAS_FLcDNA=J065118E21;TENOR=Os02t0255900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	8825029	8825230	.	+	.	Parent=Os02t0255900-01
Chr02	irgsp1_rep	CDS	8825231	8825380	.	+	0	Parent=Os02t0255900-01
Chr02	irgsp1_rep	three_prime_UTR	8825381	8825614	.	+	.	Parent=Os02t0255900-01
Chr02	irgsp1_rep	mRNA	8834020	8835881	.	-	.	ID=Os02t0256000-01;Name=Os02t0256000-01;Locus_id=Os02g0256000;Note=Hypothetical protein.;Transcript_evidence=AK108573 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-145-F06;Expression=AK108573;TENOR=Os02t0256000-01;KEGG=Os02t0256000-01
Chr02	irgsp1_rep	five_prime_UTR	8835643	8835881	.	-	.	Parent=Os02t0256000-01
Chr02	irgsp1_rep	five_prime_UTR	8835147	8835371	.	-	.	Parent=Os02t0256000-01
Chr02	irgsp1_rep	CDS	8834571	8835146	.	-	0	Parent=Os02t0256000-01
Chr02	irgsp1_rep	three_prime_UTR	8834020	8834570	.	-	.	Parent=Os02t0256000-01
Chr02	irgsp1_rep	mRNA	8834369	8837492	.	+	.	ID=Os02t0256100-01;Name=Os02t0256100-01;Locus_id=Os02g0256100;Oryzabase Gene Symbol Synonym(s)=OsPGL23%2C PGL23;Oryzabase Gene Name Synonym(s)=Polygalacturonases-Like 23%2C PG-like 23;Note=Pectin lyase fold/virulence factor domain containing protein.;Transcript_evidence=AK059595 (DDBJ%2C Best hit);ORF_evidence=NP_194113.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=001-030-D10;Oryzabase=22300;Expression=AK059595;TENOR=Os02t0256100-01;KEGG=Os02t0256100-01
Chr02	irgsp1_rep	five_prime_UTR	8834369	8834610	.	+	.	Parent=Os02t0256100-01
Chr02	irgsp1_rep	CDS	8834611	8834946	.	+	0	Parent=Os02t0256100-01
Chr02	irgsp1_rep	CDS	8835037	8835157	.	+	0	Parent=Os02t0256100-01
Chr02	irgsp1_rep	CDS	8836000	8836174	.	+	2	Parent=Os02t0256100-01
Chr02	irgsp1_rep	CDS	8836425	8836495	.	+	1	Parent=Os02t0256100-01
Chr02	irgsp1_rep	CDS	8836625	8837253	.	+	2	Parent=Os02t0256100-01
Chr02	irgsp1_rep	three_prime_UTR	8837254	8837492	.	+	.	Parent=Os02t0256100-01
Chr02	irgsp1_rep	mRNA	8834506	8837476	.	+	.	ID=Os02t0256100-02;Name=Os02t0256100-02;Locus_id=Os02g0256100;Oryzabase Gene Symbol Synonym(s)=OsPGL23%2C PGL23;Oryzabase Gene Name Synonym(s)=Polygalacturonases-Like 23%2C PG-like 23;Note=Pectin lyase fold/virulence factor domain containing protein.;Transcript_evidence=AK061146 (DDBJ%2C Best hit);ORF_evidence=NP_194113.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=006-208-D06;Oryzabase=22300;Expression=AK061146;TENOR=Os02t0256100-02;KEGG=Os02t0256100-02
Chr02	irgsp1_rep	five_prime_UTR	8834506	8834610	.	+	.	Parent=Os02t0256100-02
Chr02	irgsp1_rep	CDS	8834611	8834946	.	+	0	Parent=Os02t0256100-02
Chr02	irgsp1_rep	CDS	8835037	8835157	.	+	0	Parent=Os02t0256100-02
Chr02	irgsp1_rep	CDS	8836000	8836174	.	+	2	Parent=Os02t0256100-02
Chr02	irgsp1_rep	CDS	8836425	8836495	.	+	1	Parent=Os02t0256100-02
Chr02	irgsp1_rep	CDS	8836625	8837253	.	+	2	Parent=Os02t0256100-02
Chr02	irgsp1_rep	three_prime_UTR	8837254	8837476	.	+	.	Parent=Os02t0256100-02
Chr02	irgsp1_rep	mRNA	8834599	8837476	.	+	.	ID=Os02t0256100-03;Name=Os02t0256100-03;Locus_id=Os02g0256100;Oryzabase Gene Symbol Synonym(s)=OsPGL23%2C PGL23;Oryzabase Gene Name Synonym(s)=Polygalacturonases-Like 23%2C PG-like 23;Note=Pectin lyase fold/virulence factor domain containing protein.;Transcript_evidence=AK106194 (DDBJ%2C Best hit);ORF_evidence=NP_194113.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=001-208-E05;Oryzabase=22300;Expression=AK106194;TENOR=Os02t0256100-03;KEGG=Os02t0256100-03
Chr02	irgsp1_rep	five_prime_UTR	8834599	8834610	.	+	.	Parent=Os02t0256100-03
Chr02	irgsp1_rep	CDS	8834611	8834946	.	+	0	Parent=Os02t0256100-03
Chr02	irgsp1_rep	CDS	8835037	8835157	.	+	0	Parent=Os02t0256100-03
Chr02	irgsp1_rep	CDS	8836000	8836174	.	+	2	Parent=Os02t0256100-03
Chr02	irgsp1_rep	CDS	8836425	8836495	.	+	1	Parent=Os02t0256100-03
Chr02	irgsp1_rep	CDS	8836625	8837253	.	+	2	Parent=Os02t0256100-03
Chr02	irgsp1_rep	three_prime_UTR	8837254	8837476	.	+	.	Parent=Os02t0256100-03
Chr02	irgsp1_rep	mRNA	8842948	8844249	.	-	.	ID=Os02t0256200-02;Name=Os02t0256200-02;Locus_id=Os02g0256200;Note=Similar to Histidine-rich protein.;Transcript_evidence=AK103464 (DDBJ%2C Best hit),AK101438 (DDBJ%2C Best hit);ORF_evidence=Q76BT1 (UniProt);NIAS_FLcDNA=J033129N01,J033039D20;Expression=AK103464;TENOR=Os02t0256200-02;KEGG=Os02t0256200-02
Chr02	irgsp1_rep	five_prime_UTR	8844217	8844249	.	-	.	Parent=Os02t0256200-02
Chr02	irgsp1_rep	CDS	8843188	8844216	.	-	0	Parent=Os02t0256200-02
Chr02	irgsp1_rep	three_prime_UTR	8842948	8843187	.	-	.	Parent=Os02t0256200-02
Chr02	irgsp1_rep	mRNA	8850623	8851897	.	+	.	ID=Os02t0256500-01;Name=Os02t0256500-01;Locus_id=Os02g0256500;Note=Conserved hypothetical protein.;Transcript_evidence=AK109155 (DDBJ%2C Best hit);ORF_evidence=Q7G2S6 (UniProt);NIAS_FLcDNA=002-155-G02;TENOR=Os02t0256500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	8850623	8851364	.	+	.	Parent=Os02t0256500-01
Chr02	irgsp1_rep	CDS	8851365	8851475	.	+	0	Parent=Os02t0256500-01
Chr02	irgsp1_rep	three_prime_UTR	8851476	8851897	.	+	.	Parent=Os02t0256500-01
Chr02	irgsp1_rep	mRNA	8854327	8854985	.	-	.	ID=Os02t0256800-00;Name=Os02t0256800-00;Locus_id=Os02g0256800;CGSNL Gene Symbol=UCL2;CGSNL Gene Name=UCLACYANIN-LIKE PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsUCL2;Oryzabase Gene Name Synonym(s)=uclacyanin-like protein 2;Note=Cupredoxin domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001046471.1 (RefSeq);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);Oryzabase=9751;TENOR=Os02t0256800-00;KEGG=Os02t0256800-00
Chr02	irgsp1_rep	CDS	8854814	8854985	.	-	0	Parent=Os02t0256800-00
Chr02	irgsp1_rep	CDS	8854327	8854535	.	-	2	Parent=Os02t0256800-00
Chr02	irgsp1_rep	mRNA	8856566	8860576	.	+	.	ID=Os02t0257001-00;Name=Os02t0257001-00;Locus_id=Os02g0257001;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001172885.1 (RefSeq);TENOR=Os02t0257001-00;KEGG=Os02t0257001-00
Chr02	irgsp1_rep	CDS	8856566	8856709	.	+	0	Parent=Os02t0257001-00
Chr02	irgsp1_rep	CDS	8857507	8857542	.	+	0	Parent=Os02t0257001-00
Chr02	irgsp1_rep	CDS	8860160	8860576	.	+	0	Parent=Os02t0257001-00
Chr02	irgsp1_rep	mRNA	8866815	8867667	.	-	.	ID=Os02t0257100-01;Name=Os02t0257100-01;Locus_id=Os02g0257100;CGSNL Gene Symbol=UCL3;CGSNL Gene Name=UCLACYANIN-LIKE PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsUCL3;Oryzabase Gene Name Synonym(s)=uclacyanin-like protein 3;Note=Cupredoxin domain containing protein.;Transcript_evidence=AK242540 (DDBJ%2C Best hit);ORF_evidence=B6SXE9 (UniProt);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);NIAS_FLcDNA=J080318B12;Oryzabase=9752;TENOR=Os02t0257100-01;KEGG=Os02t0257100-01
Chr02	irgsp1_rep	five_prime_UTR	8867541	8867667	.	-	.	Parent=Os02t0257100-01
Chr02	irgsp1_rep	CDS	8867372	8867540	.	-	0	Parent=Os02t0257100-01
Chr02	irgsp1_rep	CDS	8867084	8867283	.	-	2	Parent=Os02t0257100-01
Chr02	irgsp1_rep	three_prime_UTR	8866815	8867083	.	-	.	Parent=Os02t0257100-01
Chr02	irgsp1_rep	mRNA	8869192	8871520	.	-	.	ID=Os02t0257200-01;Name=Os02t0257200-01;Locus_id=Os02g0257200;Note=Conserved hypothetical protein.;Transcript_evidence=AK103494 (DDBJ%2C Best hit);ORF_evidence=A2X344 (UniProt);NIAS_FLcDNA=J033130P11;Expression=AK103494;TENOR=Os02t0257200-01;KEGG=Os02t0257200-01
Chr02	irgsp1_rep	five_prime_UTR	8871469	8871520	.	-	.	Parent=Os02t0257200-01
Chr02	irgsp1_rep	CDS	8871088	8871468	.	-	0	Parent=Os02t0257200-01
Chr02	irgsp1_rep	CDS	8869802	8870050	.	-	0	Parent=Os02t0257200-01
Chr02	irgsp1_rep	CDS	8869383	8869667	.	-	0	Parent=Os02t0257200-01
Chr02	irgsp1_rep	three_prime_UTR	8869192	8869382	.	-	.	Parent=Os02t0257200-01
Chr02	irgsp1_rep	mRNA	8869357	8871474	.	+	.	ID=Os02t0257250-00;Name=Os02t0257250-00;Locus_id=Os02g0257250;Note=Hypothetical gene.;Transcript_evidence=BT019246 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0257250-00;KEGG=Os02t0257250-00
Chr02	irgsp1_rep	five_prime_UTR	8869357	8869491	.	+	.	Parent=Os02t0257250-00
Chr02	irgsp1_rep	CDS	8869492	8869683	.	+	0	Parent=Os02t0257250-00
Chr02	irgsp1_rep	CDS	8869827	8870067	.	+	0	Parent=Os02t0257250-00
Chr02	irgsp1_rep	CDS	8871104	8871348	.	+	2	Parent=Os02t0257250-00
Chr02	irgsp1_rep	three_prime_UTR	8871349	8871474	.	+	.	Parent=Os02t0257250-00
Chr02	irgsp1_rep	mRNA	8873101	8875996	.	+	.	ID=Os02t0257300-00;Name=Os02t0257300-00;Locus_id=Os02g0257300;CGSNL Gene Symbol=STR12;CGSNL Gene Name=SULFURTRANSFERASE 12;Oryzabase Gene Symbol Synonym(s)=OsStr12%2C Str12%2C TROL%2C Os-TROL%2C OsTROL;Oryzabase Gene Name Synonym(s)=Sulfurtransferase 12;Note=Rhodanese-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001046473.1 (RefSeq);InterPro=Rhodanese-like (IPR001763);Oryzabase=12062;TENOR=Os02t0257300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	8873101	8873717	.	+	0	Parent=Os02t0257300-00
Chr02	irgsp1_rep	CDS	8874022	8874145	.	+	1	Parent=Os02t0257300-00
Chr02	irgsp1_rep	CDS	8874460	8874534	.	+	0	Parent=Os02t0257300-00
Chr02	irgsp1_rep	CDS	8874620	8874694	.	+	0	Parent=Os02t0257300-00
Chr02	irgsp1_rep	CDS	8874778	8874858	.	+	0	Parent=Os02t0257300-00
Chr02	irgsp1_rep	CDS	8875368	8875559	.	+	0	Parent=Os02t0257300-00
Chr02	irgsp1_rep	CDS	8875664	8875849	.	+	0	Parent=Os02t0257300-00
Chr02	irgsp1_rep	CDS	8875949	8875996	.	+	0	Parent=Os02t0257300-00
Chr02	irgsp1_rep	mRNA	8876190	8876441	.	+	.	ID=Os02t0257400-01;Name=Os02t0257400-01;Locus_id=Os02g0257400;Note=Non-protein coding transcript.;Transcript_evidence=AK058619 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-018-B06;TENOR=Os02t0257400-01
Chr02	irgsp1_rep	exon	8876190	8876441	.	+	.	Parent=Os02t0257400-01
Chr02	irgsp1_rep	mRNA	8879339	8882660	.	-	.	ID=Os02t0257500-01;Name=Os02t0257500-01;Locus_id=Os02g0257500;RAP-DB Gene Symbol Synonym(s)=OsSPCH2;RAP-DB Gene Name Synonym(s)=SPEECHLESS 2;Oryzabase Gene Symbol Synonym(s)=OsbHLH053%2C bHLH053%2C bHLH53%2C OsSPCH2%2C SPCH2;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 053%2C SPEECHLESS 2;Note=Basic helix-loop-helix (bHLH) transcription factor%2C Initiation of stomatal development%2C Control of stomatal initiation and meristemoid fate;Transcript_evidence=BT036901 (maize);ORF_evidence=Q6ETQ5;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Helix-loop-helix DNA-binding domain superfamily (IPR036638),Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);Manual Curation=March 5%2C 2020;Literature_PMID=30825332;Oryzabase=15344;TENOR=Os02t0257500-00;KEGG=Os02t0257500-00
Chr02	irgsp1_rep	CDS	8882172	8882660	.	-	0	Parent=Os02t0257500-01
Chr02	irgsp1_rep	CDS	8880942	8881634	.	-	0	Parent=Os02t0257500-01
Chr02	irgsp1_rep	CDS	8879442	8879507	.	-	0	Parent=Os02t0257500-01
Chr02	irgsp1_rep	three_prime_UTR	8879339	8879441	.	-	.	Parent=Os02t0257500-01
Chr02	irgsp1_rep	mRNA	8927818	8928740	.	+	.	ID=Os02t0258000-00;Name=Os02t0258000-00;Locus_id=Os02g0258000;Note=Hypothetical conserved gene.;Transcript_evidence=CT835450 (DDBJ%2C Best hit);ORF_evidence=Q6ETP6 (UniProt);TENOR=Os02t0258000-00;KEGG=Os02t0258000-00
Chr02	irgsp1_rep	five_prime_UTR	8927818	8927861	.	+	.	Parent=Os02t0258000-00
Chr02	irgsp1_rep	CDS	8927862	8928278	.	+	0	Parent=Os02t0258000-00
Chr02	irgsp1_rep	three_prime_UTR	8928279	8928740	.	+	.	Parent=Os02t0258000-00
Chr02	irgsp1_rep	mRNA	8935193	8936223	.	-	.	ID=Os02t0258200-01;Name=Os02t0258200-01;Locus_id=Os02g0258200;Oryzabase Gene Name Synonym(s)=High mobility group%2C HMG1/HMG2 domain-containing protein;Note=Similar to high mobility group family.;Transcript_evidence=AK070270 (DDBJ%2C Best hit);ORF_evidence=XP_002303636.1 (RefSeq);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=High mobility group%2C HMG1/HMG2 (IPR000910),High mobility group%2C superfamily (IPR009071);NIAS_FLcDNA=J023045H02;Oryzabase=22043;TENOR=Os02t0258200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	8936215	8936223	.	-	.	Parent=Os02t0258200-01
Chr02	irgsp1_rep	CDS	8935414	8936214	.	-	0	Parent=Os02t0258200-01
Chr02	irgsp1_rep	three_prime_UTR	8935193	8935413	.	-	.	Parent=Os02t0258200-01
Chr02	irgsp1_rep	mRNA	8936361	8937179	.	-	.	ID=Os02t0258250-00;Name=Os02t0258250-00;Locus_id=Os02g0258250;Note=Hypothetical conserved gene.;Transcript_evidence=CT837539 (DDBJ%2C Best hit);ORF_evidence=XP_002299486.1 (RefSeq);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=High mobility group%2C HMG1/HMG2 (IPR000910),High mobility group%2C superfamily (IPR009071);TENOR=Os02t0258250-00
Chr02	irgsp1_rep	five_prime_UTR	8937120	8937179	.	-	.	Parent=Os02t0258250-00
Chr02	irgsp1_rep	CDS	8936733	8937119	.	-	0	Parent=Os02t0258250-00
Chr02	irgsp1_rep	CDS	8936483	8936617	.	-	0	Parent=Os02t0258250-00
Chr02	irgsp1_rep	CDS	8936361	8936406	.	-	0	Parent=Os02t0258250-00
Chr02	irgsp1_rep	mRNA	8938210	8943482	.	-	.	ID=Os02t0258300-01;Name=Os02t0258300-01;Locus_id=Os02g0258300;Note=Zinc finger%2C FYVE/PHD-type domain containing protein.;Transcript_evidence=AK073995 (DDBJ%2C Best hit);ORF_evidence=B8AFA0 (UniProt);InterPro=Protein of unknown function DUF3133 (IPR021480);NIAS_FLcDNA=J033072F22;Expression=AK073995;TENOR=Os02t0258300-01;KEGG=Os02t0258300-01
Chr02	irgsp1_rep	five_prime_UTR	8943346	8943482	.	-	.	Parent=Os02t0258300-01
Chr02	irgsp1_rep	CDS	8943195	8943345	.	-	0	Parent=Os02t0258300-01
Chr02	irgsp1_rep	CDS	8939626	8941663	.	-	2	Parent=Os02t0258300-01
Chr02	irgsp1_rep	CDS	8939447	8939507	.	-	1	Parent=Os02t0258300-01
Chr02	irgsp1_rep	CDS	8939137	8939360	.	-	0	Parent=Os02t0258300-01
Chr02	irgsp1_rep	CDS	8938430	8938484	.	-	1	Parent=Os02t0258300-01
Chr02	irgsp1_rep	three_prime_UTR	8938210	8938429	.	-	.	Parent=Os02t0258300-01
Chr02	irgsp1_rep	mRNA	8938133	8939948	.	-	.	ID=Os02t0258300-02;Name=Os02t0258300-02;Locus_id=Os02g0258300;Note=Similar to extra-large G-protein-related.;Transcript_evidence=AK104067 (DDBJ%2C Best hit);ORF_evidence=NP_192018.1 (RefSeq);NIAS_FLcDNA=001-026-D09;TENOR=Os02t0258300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	8939883	8939948	.	-	.	Parent=Os02t0258300-02
Chr02	irgsp1_rep	CDS	8939626	8939882	.	-	0	Parent=Os02t0258300-02
Chr02	irgsp1_rep	CDS	8939447	8939507	.	-	1	Parent=Os02t0258300-02
Chr02	irgsp1_rep	CDS	8939137	8939360	.	-	0	Parent=Os02t0258300-02
Chr02	irgsp1_rep	CDS	8938430	8938484	.	-	1	Parent=Os02t0258300-02
Chr02	irgsp1_rep	three_prime_UTR	8938133	8938429	.	-	.	Parent=Os02t0258300-02
Chr02	irgsp1_rep	mRNA	8973633	8977322	.	+	.	ID=Os02t0258800-01;Name=Os02t0258800-01;Locus_id=Os02g0258800;Note=Conserved hypothetical protein.;Transcript_evidence=AK243462 (DDBJ%2C Best hit);ORF_evidence=NP_001046476.1 (RefSeq);NIAS_FLcDNA=J100071D03;TENOR=Os02t0258800-01;KEGG=Os02t0258800-01
Chr02	irgsp1_rep	five_prime_UTR	8973633	8973731	.	+	.	Parent=Os02t0258800-01
Chr02	irgsp1_rep	CDS	8973732	8974016	.	+	0	Parent=Os02t0258800-01
Chr02	irgsp1_rep	three_prime_UTR	8974017	8974051	.	+	.	Parent=Os02t0258800-01
Chr02	irgsp1_rep	three_prime_UTR	8977089	8977322	.	+	.	Parent=Os02t0258800-01
Chr02	irgsp1_rep	mRNA	8976813	8981140	.	-	.	ID=Os02t0258900-01;Name=Os02t0258900-01;Locus_id=Os02g0258900;Note=Similar to Molybdopterin biosynthesis CNX2 protein (Molybdenum cofactor biosynthesis enzyme CNX2).;Transcript_evidence=AK100565 (DDBJ%2C Best hit);ORF_evidence=NP_850177.2 (RefSeq);GO=Biological Process: Mo-molybdopterin cofactor biosynthetic process (GO:0006777),Biological Process: metabolic process (GO:0008152),Cellular Component: molybdopterin synthase complex (GO:0019008),Molecular Function: catalytic activity (GO:0003824),Molecular Function: metal ion binding (GO:0046872),Molecular Function: iron-sulfur cluster binding (GO:0051536),Molecular Function: 4 iron%2C 4 sulfur cluster binding (GO:0051539);InterPro=MoaA/nifB/pqqE%2C iron-sulphur binding%2C conserved site (IPR000385),Elongator protein 3/MiaB/NifB (IPR006638),Radical SAM (IPR007197),Molybdenum cofactor synthesis C-terminal (IPR010505),Molybdenum cofactor biosynthesis protein A (IPR013483),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J023104J24;Oryzabase=22704;Expression=AK100565;TENOR=Os02t0258900-01;KEGG=Os02t0258900-01
Chr02	irgsp1_rep	five_prime_UTR	8980954	8981140	.	-	.	Parent=Os02t0258900-01
Chr02	irgsp1_rep	five_prime_UTR	8980727	8980841	.	-	.	Parent=Os02t0258900-01
Chr02	irgsp1_rep	CDS	8980667	8980726	.	-	0	Parent=Os02t0258900-01
Chr02	irgsp1_rep	CDS	8979804	8980415	.	-	0	Parent=Os02t0258900-01
Chr02	irgsp1_rep	CDS	8979499	8979666	.	-	0	Parent=Os02t0258900-01
Chr02	irgsp1_rep	CDS	8979149	8979340	.	-	0	Parent=Os02t0258900-01
Chr02	irgsp1_rep	CDS	8978355	8978423	.	-	0	Parent=Os02t0258900-01
Chr02	irgsp1_rep	CDS	8977604	8977687	.	-	0	Parent=Os02t0258900-01
Chr02	irgsp1_rep	three_prime_UTR	8977603	8977603	.	-	.	Parent=Os02t0258900-01
Chr02	irgsp1_rep	three_prime_UTR	8976813	8977143	.	-	.	Parent=Os02t0258900-01
Chr02	irgsp1_rep	mRNA	8976792	8981094	.	-	.	ID=Os02t0258900-02;Name=Os02t0258900-02;Locus_id=Os02g0258900;Note=Similar to CNX2 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2)%3B catalytic.;Transcript_evidence=AK243064 (DDBJ%2C Best hit);ORF_evidence=NP_850177.2 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: metal ion binding (GO:0046872),Molecular Function: iron-sulfur cluster binding (GO:0051536),Molecular Function: 4 iron%2C 4 sulfur cluster binding (GO:0051539);InterPro=MoaA/nifB/pqqE%2C iron-sulphur binding%2C conserved site (IPR000385),Elongator protein 3/MiaB/NifB (IPR006638),Radical SAM (IPR007197),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J100015K17;Oryzabase=22704;TENOR=Os02t0258900-02;KEGG=Os02t0258900-02
Chr02	irgsp1_rep	five_prime_UTR	8980954	8981094	.	-	.	Parent=Os02t0258900-02
Chr02	irgsp1_rep	five_prime_UTR	8980727	8980841	.	-	.	Parent=Os02t0258900-02
Chr02	irgsp1_rep	CDS	8980667	8980726	.	-	0	Parent=Os02t0258900-02
Chr02	irgsp1_rep	CDS	8979804	8980415	.	-	0	Parent=Os02t0258900-02
Chr02	irgsp1_rep	CDS	8979494	8979666	.	-	0	Parent=Os02t0258900-02
Chr02	irgsp1_rep	CDS	8979319	8979340	.	-	1	Parent=Os02t0258900-02
Chr02	irgsp1_rep	three_prime_UTR	8979149	8979318	.	-	.	Parent=Os02t0258900-02
Chr02	irgsp1_rep	three_prime_UTR	8976792	8978423	.	-	.	Parent=Os02t0258900-02
Chr02	irgsp1_rep	mRNA	8984621	8989570	.	-	.	ID=Os02t0259100-01;Name=Os02t0259100-01;Locus_id=Os02g0259100;CGSNL Gene Symbol=IIP2;CGSNL Gene Name=ILA1 INTERACTING PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=IIP2;Oryzabase Gene Name Synonym(s)=ILA1 interacting protein 2;Note=Conserved hypothetical protein.;Transcript_evidence=AK068099 (DDBJ%2C Best hit);ORF_evidence=Q6K245 (UniProt);NIAS_FLcDNA=J013134G20;Oryzabase=10223;Expression=AK068099;TENOR=Os02t0259100-01;KEGG=Os02t0259100-01
Chr02	irgsp1_rep	five_prime_UTR	8989427	8989570	.	-	.	Parent=Os02t0259100-01
Chr02	irgsp1_rep	five_prime_UTR	8987578	8987653	.	-	.	Parent=Os02t0259100-01
Chr02	irgsp1_rep	five_prime_UTR	8986781	8987068	.	-	.	Parent=Os02t0259100-01
Chr02	irgsp1_rep	CDS	8985727	8986780	.	-	0	Parent=Os02t0259100-01
Chr02	irgsp1_rep	CDS	8985408	8985427	.	-	2	Parent=Os02t0259100-01
Chr02	irgsp1_rep	three_prime_UTR	8984621	8985407	.	-	.	Parent=Os02t0259100-01
Chr02	irgsp1_rep	mRNA	8984648	8989513	.	-	.	ID=Os02t0259100-02;Name=Os02t0259100-02;Locus_id=Os02g0259100;CGSNL Gene Symbol=IIP2;CGSNL Gene Name=ILA1 INTERACTING PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=IIP2;Oryzabase Gene Name Synonym(s)=ILA1 interacting protein 2;Note=Similar to predicted protein.;Transcript_evidence=AK100409 (DDBJ%2C Best hit);ORF_evidence=Q6K246 (UniProt);NIAS_FLcDNA=J023087H04;Oryzabase=10223;Expression=AK100409;TENOR=Os02t0259100-02;KEGG=Os02t0259100-02
Chr02	irgsp1_rep	five_prime_UTR	8989427	8989513	.	-	.	Parent=Os02t0259100-02
Chr02	irgsp1_rep	five_prime_UTR	8987578	8987653	.	-	.	Parent=Os02t0259100-02
Chr02	irgsp1_rep	five_prime_UTR	8986781	8987068	.	-	.	Parent=Os02t0259100-02
Chr02	irgsp1_rep	CDS	8984885	8986780	.	-	0	Parent=Os02t0259100-02
Chr02	irgsp1_rep	three_prime_UTR	8984648	8984884	.	-	.	Parent=Os02t0259100-02
Chr02	irgsp1_rep	mRNA	9005327	9007486	.	-	.	ID=Os02t0259600-01;Name=Os02t0259600-01;Locus_id=Os02g0259600;CGSNL Gene Symbol=RPL21;CGSNL Gene Name=RIBOSOMAL PROTEIN L21;Oryzabase Gene Symbol Synonym(s)=OsRPL21%2C Rpl21%2C OsRpl21;Oryzabase Gene Name Synonym(s)=ribosomal protein L21%2C ribosomal protein large subunit 21;Note=Similar to 50S ribosomal protein L21%2C chloroplast precursor (CL21) (CS-L7).;Transcript_evidence=AK064863 (DDBJ%2C Best hit),AK104384 (DDBJ%2C Best hit);ORF_evidence=B6U3Z0 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L21 (IPR001787),Ribosomal protein L21%2C conserved site (IPR018258);NIAS_FLcDNA=J013000I04,006-201-D06;Oryzabase=22391;TENOR=Os02t0259600-01
Chr02	irgsp1_rep	five_prime_UTR	9007438	9007486	.	-	.	Parent=Os02t0259600-01
Chr02	irgsp1_rep	CDS	9007135	9007437	.	-	0	Parent=Os02t0259600-01
Chr02	irgsp1_rep	CDS	9006583	9006663	.	-	0	Parent=Os02t0259600-01
Chr02	irgsp1_rep	CDS	9005933	9006034	.	-	0	Parent=Os02t0259600-01
Chr02	irgsp1_rep	CDS	9005775	9005849	.	-	0	Parent=Os02t0259600-01
Chr02	irgsp1_rep	CDS	9005572	9005655	.	-	0	Parent=Os02t0259600-01
Chr02	irgsp1_rep	three_prime_UTR	9005327	9005571	.	-	.	Parent=Os02t0259600-01
Chr02	irgsp1_rep	mRNA	9005264	9006009	.	-	.	ID=Os02t0259600-02;Name=Os02t0259600-02;Locus_id=Os02g0259600;CGSNL Gene Symbol=RPL21;CGSNL Gene Name=RIBOSOMAL PROTEIN L21;Oryzabase Gene Symbol Synonym(s)=OsRPL21%2C Rpl21%2C OsRpl21;Oryzabase Gene Name Synonym(s)=ribosomal protein L21%2C ribosomal protein large subunit 21;Note=Similar to 50S ribosomal protein L21.;Transcript_evidence=AK062182 (DDBJ%2C Best hit);ORF_evidence=B6U3Z0 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L21 (IPR001787),Ribosomal protein L21%2C conserved site (IPR018258);NIAS_FLcDNA=001-046-D10;Oryzabase=22391;Expression=AK062182;TENOR=Os02t0259600-02;KEGG=Os02t0259600-02
Chr02	irgsp1_rep	five_prime_UTR	9006008	9006009	.	-	.	Parent=Os02t0259600-02
Chr02	irgsp1_rep	CDS	9005933	9006007	.	-	0	Parent=Os02t0259600-02
Chr02	irgsp1_rep	CDS	9005775	9005849	.	-	0	Parent=Os02t0259600-02
Chr02	irgsp1_rep	CDS	9005572	9005655	.	-	0	Parent=Os02t0259600-02
Chr02	irgsp1_rep	three_prime_UTR	9005264	9005571	.	-	.	Parent=Os02t0259600-02
Chr02	irgsp1_rep	mRNA	9016923	9018833	.	+	.	ID=Os02t0259850-00;Name=Os02t0259850-00;Locus_id=Os02g0259850;Note=Hypothetical gene.;Transcript_evidence=EU943678 (DDBJ);ORF_evidence=GeneMark;TENOR=Os02t0259850-00
Chr02	irgsp1_rep	five_prime_UTR	9016923	9017076	.	+	.	Parent=Os02t0259850-00
Chr02	irgsp1_rep	five_prime_UTR	9018009	9018078	.	+	.	Parent=Os02t0259850-00
Chr02	irgsp1_rep	CDS	9018079	9018833	.	+	0	Parent=Os02t0259850-00
Chr02	irgsp1_rep	mRNA	9021454	9023102	.	+	.	ID=Os02t0259900-01;Name=Os02t0259900-01;Locus_id=Os02g0259900;Note=Conserved hypothetical protein.;Transcript_evidence=AK063689 (DDBJ%2C Best hit);ORF_evidence=B9F4V8 (UniProt);NIAS_FLcDNA=001-119-F07;Oryzabase=23574;TENOR=Os02t0259900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	9021454	9021666	.	+	0	Parent=Os02t0259900-01
Chr02	irgsp1_rep	CDS	9021761	9022879	.	+	0	Parent=Os02t0259900-01
Chr02	irgsp1_rep	three_prime_UTR	9022880	9023102	.	+	.	Parent=Os02t0259900-01
Chr02	irgsp1_rep	mRNA	9026460	9026900	.	+	.	ID=Os02t0260000-01;Name=Os02t0260000-01;Locus_id=Os02g0260000;Note=Non-protein coding transcript.;Transcript_evidence=AK109224 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-156-E08;TENOR=Os02t0260000-01
Chr02	irgsp1_rep	exon	9026460	9026900	.	+	.	Parent=Os02t0260000-01
Chr02	irgsp1_rep	mRNA	9042064	9046144	.	+	.	ID=Os02t0260200-01;Name=Os02t0260200-01;Locus_id=Os02g0260200;RAP-DB Gene Symbol Synonym(s)=EP3%2C LP;RAP-DB Gene Name Synonym(s)=ERECT PANICLE 3%2C LARGER PANICLE;CGSNL Gene Symbol=EP3;CGSNL Gene Name=ERECT PANICLE 3;Oryzabase Gene Symbol Synonym(s)=EP3/LP%2C LP%2C OsLP%2C OsFbox076%2C OsFbox76%2C Os_F0106%2C OsEP3;Oryzabase Gene Name Synonym(s)=LARGER PANICLE%2C F-box protein 76;Note=Kelch repeat-containing F-box protein%2C Regulation of panicle architecture;Transcript_evidence=HQ018816 (Zhonghua 11),AK064350 (truncated),AK073921 (truncated),AK287808 (truncated);ORF_evidence=G3CKN6;GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain (IPR001810),Kelch-type beta propeller (IPR015915),Galactose oxidase/kelch%2C beta-propeller (IPR011043);Manual Curation=September 7%2C 2017;Literature_PMID=21447055,19756471;Oryzabase=8923;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=endoplasmic reticulum (GO:0005783)
Chr02	irgsp1_rep	five_prime_UTR	9042064	9042085	.	+	.	Parent=Os02t0260200-01
Chr02	irgsp1_rep	CDS	9042086	9042374	.	+	0	Parent=Os02t0260200-01
Chr02	irgsp1_rep	CDS	9043254	9044512	.	+	2	Parent=Os02t0260200-01
Chr02	irgsp1_rep	three_prime_UTR	9044513	9046144	.	+	.	Parent=Os02t0260200-01
Chr02	irgsp1_rep	mRNA	9052733	9056389	.	-	.	ID=Os02t0260400-01;Name=Os02t0260400-01;Locus_id=Os02g0260400;Note=Protein of unknown function DUF37 family protein.;Transcript_evidence=AK102256 (DDBJ%2C Best hit);ORF_evidence=Q6K231 (UniProt);InterPro=Protein of unknown function DUF37 (IPR002696);NIAS_FLcDNA=J033088I10;Expression=AK102256;TENOR=Os02t0260400-01;KEGG=Os02t0260400-01
Chr02	irgsp1_rep	five_prime_UTR	9056295	9056389	.	-	.	Parent=Os02t0260400-01
Chr02	irgsp1_rep	CDS	9056234	9056294	.	-	0	Parent=Os02t0260400-01
Chr02	irgsp1_rep	CDS	9055249	9055320	.	-	2	Parent=Os02t0260400-01
Chr02	irgsp1_rep	CDS	9054203	9054343	.	-	2	Parent=Os02t0260400-01
Chr02	irgsp1_rep	CDS	9054035	9054093	.	-	2	Parent=Os02t0260400-01
Chr02	irgsp1_rep	three_prime_UTR	9054028	9054034	.	-	.	Parent=Os02t0260400-01
Chr02	irgsp1_rep	three_prime_UTR	9052733	9053078	.	-	.	Parent=Os02t0260400-01
Chr02	irgsp1_rep	mRNA	9066936	9068429	.	+	.	ID=Os02t0260500-00;Name=Os02t0260500-00;Locus_id=Os02g0260500;Oryzabase Gene Symbol Synonym(s)=SIP7;Oryzabase Gene Name Synonym(s)=SKIP interacting protein 7%2C SKIPa-interacting protein 7%2C SKIPa-interacting protein 7;Note=Hypothetical conserved gene.;Transcript_evidence=EU368697 (DDBJ%2C Best hit);ORF_evidence=NP_001046483.2 (RefSeq);Oryzabase=9939;TENOR=Os02t0260500-00;KEGG=Os02t0260500-00
Chr02	irgsp1_rep	CDS	9066936	9068429	.	+	0	Parent=Os02t0260500-00
Chr02	irgsp1_rep	mRNA	9082763	9087989	.	+	.	ID=Os02t0260700-01;Name=Os02t0260700-01;Locus_id=Os02g0260700;Note=Similar to GAMYB-binding protein (Fragment).;Transcript_evidence=AK100835 (DDBJ%2C Best hit);ORF_evidence=NP_001148937.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),BTB/POZ fold (IPR011333),BTB/Kelch-associated (IPR011705),BTB/POZ (IPR013069);NIAS_FLcDNA=J023123D22;Expression=AK100835;TENOR=Os02t0260700-01;KEGG=Os02t0260700-01
Chr02	irgsp1_rep	five_prime_UTR	9082763	9082859	.	+	.	Parent=Os02t0260700-01
Chr02	irgsp1_rep	CDS	9082860	9083124	.	+	0	Parent=Os02t0260700-01
Chr02	irgsp1_rep	CDS	9085031	9085159	.	+	2	Parent=Os02t0260700-01
Chr02	irgsp1_rep	CDS	9085875	9085996	.	+	2	Parent=Os02t0260700-01
Chr02	irgsp1_rep	CDS	9086093	9086156	.	+	0	Parent=Os02t0260700-01
Chr02	irgsp1_rep	CDS	9086504	9086783	.	+	2	Parent=Os02t0260700-01
Chr02	irgsp1_rep	CDS	9086912	9087728	.	+	1	Parent=Os02t0260700-01
Chr02	irgsp1_rep	three_prime_UTR	9087729	9087989	.	+	.	Parent=Os02t0260700-01
Chr02	irgsp1_rep	mRNA	9086501	9087973	.	+	.	ID=Os02t0260700-02;Name=Os02t0260700-02;Locus_id=Os02g0260700;Note=Similar to GAMYB-binding protein.;Transcript_evidence=AK061699 (DDBJ%2C Best hit),AK099509 (DDBJ%2C Best hit);ORF_evidence=NP_001148937.1 (RefSeq);InterPro=BTB/POZ fold (IPR011333),BTB/Kelch-associated (IPR011705);NIAS_FLcDNA=001-037-D06,J013029E15;TENOR=Os02t0260700-02
Chr02	irgsp1_rep	five_prime_UTR	9086501	9086502	.	+	.	Parent=Os02t0260700-02
Chr02	irgsp1_rep	CDS	9086503	9086783	.	+	0	Parent=Os02t0260700-02
Chr02	irgsp1_rep	CDS	9086912	9087728	.	+	1	Parent=Os02t0260700-02
Chr02	irgsp1_rep	three_prime_UTR	9087729	9087973	.	+	.	Parent=Os02t0260700-02
Chr02	irgsp1_rep	mRNA	9091400	9091461	.	-	.	ID=Os02t0260800-00;Name=Os02t0260800-00;Locus_id=Os02g0260800;Note=Non-protein coding transcript.;Transcript_evidence=EU941912 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0260800-00
Chr02	irgsp1_rep	exon	9091400	9091461	.	-	.	Parent=Os02t0260800-00
Chr02	irgsp1_rep	mRNA	9095708	9096382	.	+	.	ID=Os02t0260900-00;Name=Os02t0260900-00;Locus_id=Os02g0260900;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);InterPro=Ribonuclease H1%2C N-terminal (IPR011320);TENOR=Os02t0260900-00
Chr02	irgsp1_rep	five_prime_UTR	9095708	9095711	.	+	.	Parent=Os02t0260900-00
Chr02	irgsp1_rep	CDS	9095712	9096218	.	+	0	Parent=Os02t0260900-00
Chr02	irgsp1_rep	three_prime_UTR	9096219	9096382	.	+	.	Parent=Os02t0260900-00
Chr02	irgsp1_rep	mRNA	9106619	9107664	.	+	.	ID=Os02t0261000-00;Name=Os02t0261000-00;Locus_id=Os02g0261000;Note=Conserved hypothetical protein.;Transcript_evidence=AK356406 (DDBJ);ORF_evidence=NP_001046485.2 (RefSeq);TENOR=Os02t0261000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	9106619	9106626	.	+	.	Parent=Os02t0261000-00
Chr02	irgsp1_rep	CDS	9106627	9107664	.	+	0	Parent=Os02t0261000-00
Chr02	irgsp1_rep	mRNA	9116165	9119456	.	+	.	ID=Os02t0261100-01;Name=Os02t0261100-01;Locus_id=Os02g0261100;RAP-DB Gene Symbol Synonym(s)=UBC5B%2C OsUBC5b%2C OsUBC15%2C UBC15;RAP-DB Gene Name Synonym(s)=UBIQUITIN CONJUGATING ENZYME 5B%2C Ubiquitin conjugating enzyme 5b%2C Ubiquitin-conjugating enzyme 15;CGSNL Gene Symbol=UBC5B;CGSNL Gene Name=UBIQUITIN CONJUGATING ENZYME 5B;Oryzabase Gene Symbol Synonym(s)=OsUBC5b%2C OsUBC15%2C UBC15;Oryzabase Gene Name Synonym(s)=Ubiquitin conjugating enzyme 5b%2C Ubiquitin-conjugating enzyme 15;Note=Ubiquitin-conjugating enzyme E2%2C Elicitor-induced defense response;Transcript_evidence=AB074412,AK121248;ORF_evidence=Q8S919;InterPro=Ubiquitin-conjugating enzyme/RWD-like (IPR016135),Ubiquitin-conjugating enzyme E2 (IPR000608),Ubiquitin-conjugating enzyme%2C active site (IPR023313);NIAS_FLcDNA=J023101B08;Manual Curation=March 11%2C 2016;Literature_PMID=12028574,25902049;Oryzabase=13911;TENOR=Os02t0261100-01;KEGG=Os02t0261100-01 (EC:6.3.2.19)
Chr02	irgsp1_rep	five_prime_UTR	9116165	9116198	.	+	.	Parent=Os02t0261100-01
Chr02	irgsp1_rep	CDS	9116199	9116268	.	+	0	Parent=Os02t0261100-01
Chr02	irgsp1_rep	CDS	9117182	9117309	.	+	2	Parent=Os02t0261100-01
Chr02	irgsp1_rep	CDS	9118439	9118543	.	+	0	Parent=Os02t0261100-01
Chr02	irgsp1_rep	CDS	9119067	9119210	.	+	0	Parent=Os02t0261100-01
Chr02	irgsp1_rep	three_prime_UTR	9119211	9119456	.	+	.	Parent=Os02t0261100-01
Chr02	irgsp1_rep	mRNA	9116199	9119212	.	-	.	ID=Os02t0261150-00;Name=Os02t0261150-00;Locus_id=Os02g0261150;Note=Non-protein coding transcript.;Transcript_evidence=BT086907 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0261150-00
Chr02	irgsp1_rep	exon	9119074	9119212	.	-	.	Parent=Os02t0261150-00
Chr02	irgsp1_rep	exon	9118466	9118555	.	-	.	Parent=Os02t0261150-00
Chr02	irgsp1_rep	exon	9117175	9117336	.	-	.	Parent=Os02t0261150-00
Chr02	irgsp1_rep	exon	9116199	9116257	.	-	.	Parent=Os02t0261150-00
Chr02	irgsp1_rep	mRNA	9142458	9144360	.	+	.	ID=Os02t0261400-00;Name=Os02t0261400-00;Locus_id=Os02g0261400;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6K2T7 (UniProt);TENOR=Os02t0261400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	9142458	9143582	.	+	0	Parent=Os02t0261400-00
Chr02	irgsp1_rep	CDS	9144259	9144360	.	+	0	Parent=Os02t0261400-00
Chr02	irgsp1_rep	mRNA	9155585	9166101	.	+	.	ID=Os02t0261800-00;Name=Os02t0261800-00;Locus_id=Os02g0261800;Note=NB-ARC domain containing protein.;Transcript_evidence=AK367884 (DDBJ);ORF_evidence=Q6K2T7 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os02t0261800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	9155585	9155585	.	+	.	Parent=Os02t0261800-00
Chr02	irgsp1_rep	CDS	9155586	9156446	.	+	0	Parent=Os02t0261800-00
Chr02	irgsp1_rep	three_prime_UTR	9156447	9156754	.	+	.	Parent=Os02t0261800-00
Chr02	irgsp1_rep	three_prime_UTR	9159588	9161152	.	+	.	Parent=Os02t0261800-00
Chr02	irgsp1_rep	three_prime_UTR	9164742	9165157	.	+	.	Parent=Os02t0261800-00
Chr02	irgsp1_rep	three_prime_UTR	9165566	9166101	.	+	.	Parent=Os02t0261800-00
Chr02	irgsp1_rep	mRNA	9238439	9242050	.	+	.	ID=Os02t0262600-00;Name=Os02t0262600-00;Locus_id=Os02g0262600;Note=Disease resistance protein domain containing protein.;Transcript_evidence=AK354867 (DDBJ);ORF_evidence=NP_001046492.1 (RefSeq);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os02t0262600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	9238439	9239236	.	+	0	Parent=Os02t0262600-00
Chr02	irgsp1_rep	three_prime_UTR	9239237	9240956	.	+	.	Parent=Os02t0262600-00
Chr02	irgsp1_rep	three_prime_UTR	9241029	9242050	.	+	.	Parent=Os02t0262600-00
Chr02	irgsp1_rep	mRNA	9257998	9262614	.	+	.	ID=Os02t0262800-01;Name=Os02t0262800-01;Locus_id=Os02g0262800;Oryzabase Gene Symbol Synonym(s)=rNBS41;Oryzabase Gene Name Synonym(s)=NBS-LRR protein rNBS41;Note=Similar to NBS-LRR protein (Fragment).;Transcript_evidence=AK073576 (DDBJ%2C Best hit);ORF_evidence=A3A5A7 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J033046M12;Oryzabase=15948;Expression=AK073576;TENOR=Os02t0262800-01;KEGG=Os02t0262800-01
Chr02	irgsp1_rep	five_prime_UTR	9257998	9258105	.	+	.	Parent=Os02t0262800-01
Chr02	irgsp1_rep	CDS	9258106	9262290	.	+	0	Parent=Os02t0262800-01
Chr02	irgsp1_rep	three_prime_UTR	9262291	9262307	.	+	.	Parent=Os02t0262800-01
Chr02	irgsp1_rep	three_prime_UTR	9262415	9262614	.	+	.	Parent=Os02t0262800-01
Chr02	irgsp1_rep	mRNA	9288823	9290817	.	+	.	ID=Os02t0263432-00;Name=Os02t0263432-00;Locus_id=Os02g0263432;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9F4W3 (UniProt);TENOR=Os02t0263432-00
Chr02	irgsp1_rep	CDS	9288823	9290817	.	+	0	Parent=Os02t0263432-00
Chr02	irgsp1_rep	mRNA	9391424	9393829	.	-	.	ID=Os02t0264300-01;Name=Os02t0264300-01;Locus_id=Os02g0264300;Note=Conserved hypothetical protein.;Transcript_evidence=AK072028 (DDBJ%2C Best hit);ORF_evidence=B8AFB0 (UniProt);NIAS_FLcDNA=J013105K02;Expression=AK072028;TENOR=Os02t0264300-01;KEGG=Os02t0264300-01
Chr02	irgsp1_rep	five_prime_UTR	9393662	9393829	.	-	.	Parent=Os02t0264300-01
Chr02	irgsp1_rep	CDS	9393302	9393661	.	-	0	Parent=Os02t0264300-01
Chr02	irgsp1_rep	CDS	9391821	9392312	.	-	0	Parent=Os02t0264300-01
Chr02	irgsp1_rep	three_prime_UTR	9391424	9391820	.	-	.	Parent=Os02t0264300-01
Chr02	irgsp1_rep	mRNA	9391326	9391717	.	-	.	ID=Os02t0264300-02;Name=Os02t0264300-02;Locus_id=Os02g0264300;Note=Non-protein coding transcript.;Transcript_evidence=AK059139 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-022-H10;TENOR=Os02t0264300-02
Chr02	irgsp1_rep	exon	9391424	9391717	.	-	.	Parent=Os02t0264300-02
Chr02	irgsp1_rep	exon	9391326	9391413	.	-	.	Parent=Os02t0264300-02
Chr02	irgsp1_rep	mRNA	9393288	9393813	.	+	.	ID=Os02t0264501-00;Name=Os02t0264501-00;Locus_id=Os02g0264501;Note=Hypothetical gene.;Transcript_evidence=EU946773 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0264501-00;KEGG=Os02t0264501-00
Chr02	irgsp1_rep	five_prime_UTR	9393288	9393301	.	+	.	Parent=Os02t0264501-00
Chr02	irgsp1_rep	CDS	9393302	9393781	.	+	0	Parent=Os02t0264501-00
Chr02	irgsp1_rep	three_prime_UTR	9393782	9393813	.	+	.	Parent=Os02t0264501-00
Chr02	irgsp1_rep	mRNA	9409107	9413552	.	+	.	ID=Os02t0264700-01;Name=Os02t0264700-01;Locus_id=Os02g0264700;Note=Similar to flagelliform silk protein-like protein [Oryza sativa (japonica cultivar-group)].;Transcript_evidence=AK101666 (DDBJ%2C Best hit);ORF_evidence=B9FS11 (UniProt);NIAS_FLcDNA=J033057N11;Expression=AK101666;TENOR=Os02t0264700-01;KEGG=Os02t0264700-01
Chr02	irgsp1_rep	five_prime_UTR	9409107	9412265	.	+	.	Parent=Os02t0264700-01
Chr02	irgsp1_rep	five_prime_UTR	9412491	9412617	.	+	.	Parent=Os02t0264700-01
Chr02	irgsp1_rep	CDS	9412618	9413004	.	+	0	Parent=Os02t0264700-01
Chr02	irgsp1_rep	three_prime_UTR	9413005	9413552	.	+	.	Parent=Os02t0264700-01
Chr02	irgsp1_rep	mRNA	9416888	9418713	.	-	.	ID=Os02t0264800-01;Name=Os02t0264800-01;Locus_id=Os02g0264800;CGSNL Gene Symbol=AGP20;CGSNL Gene Name=ARABINOGALACTAN PROTEIN 20;Oryzabase Gene Symbol Synonym(s)=OsAGP20;Oryzabase Gene Name Synonym(s)=Arabinogalactan protein 20;Note=Protein of unknown function DUF1070 family protein.;Transcript_evidence=AK069678 (DDBJ%2C Best hit);ORF_evidence=NP_001158946.1 (RefSeq);InterPro=Arabinogalactan peptide%2C AGP (IPR009424);NIAS_FLcDNA=J023028A06;Oryzabase=11313;Expression=AK069678;TENOR=Os02t0264800-01;KEGG=Os02t0264800-01
Chr02	irgsp1_rep	five_prime_UTR	9418634	9418713	.	-	.	Parent=Os02t0264800-01
Chr02	irgsp1_rep	CDS	9418519	9418633	.	-	0	Parent=Os02t0264800-01
Chr02	irgsp1_rep	CDS	9417105	9417211	.	-	2	Parent=Os02t0264800-01
Chr02	irgsp1_rep	three_prime_UTR	9416888	9417104	.	-	.	Parent=Os02t0264800-01
Chr02	irgsp1_rep	mRNA	9446493	9448541	.	-	.	ID=Os02t0265100-01;Name=Os02t0265100-01;Locus_id=Os02g0265100;Note=Hypothetical protein.;Transcript_evidence=AK107047 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-121-C10;TENOR=Os02t0265100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	9448231	9448541	.	-	.	Parent=Os02t0265100-01
Chr02	irgsp1_rep	CDS	9448197	9448230	.	-	0	Parent=Os02t0265100-01
Chr02	irgsp1_rep	CDS	9447844	9448103	.	-	2	Parent=Os02t0265100-01
Chr02	irgsp1_rep	three_prime_UTR	9447733	9447843	.	-	.	Parent=Os02t0265100-01
Chr02	irgsp1_rep	three_prime_UTR	9446493	9447489	.	-	.	Parent=Os02t0265100-01
Chr02	irgsp1_rep	mRNA	9446779	9448835	.	+	.	ID=Os02t0265200-01;Name=Os02t0265200-01;Locus_id=Os02g0265200;CGSNL Gene Symbol=WRKY39;CGSNL Gene Name=WRKY GENE 39;Oryzabase Gene Symbol Synonym(s)=OsWRKY39;Oryzabase Gene Name Synonym(s)=Rice WRKY gene39;Note=WRKY transcription factor 39.;Transcript_evidence=AK066775 (DDBJ%2C Best hit);ORF_evidence=NP_001151984.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);NIAS_FLcDNA=J013074N21;Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6552;Expression=AK066775;TENOR=Os02t0265200-01;KEGG=Os02t0265200-01
Chr02	irgsp1_rep	five_prime_UTR	9446779	9446956	.	+	.	Parent=Os02t0265200-01
Chr02	irgsp1_rep	CDS	9446957	9447426	.	+	0	Parent=Os02t0265200-01
Chr02	irgsp1_rep	CDS	9447560	9447673	.	+	1	Parent=Os02t0265200-01
Chr02	irgsp1_rep	CDS	9447758	9448259	.	+	1	Parent=Os02t0265200-01
Chr02	irgsp1_rep	three_prime_UTR	9448260	9448835	.	+	.	Parent=Os02t0265200-01
Chr02	irgsp1_rep	mRNA	9446779	9448683	.	+	.	ID=Os02t0265200-02;Name=Os02t0265200-02;Locus_id=Os02g0265200;CGSNL Gene Symbol=WRKY39;CGSNL Gene Name=WRKY GENE 39;Oryzabase Gene Symbol Synonym(s)=OsWRKY39;Oryzabase Gene Name Synonym(s)=Rice WRKY gene39;Note=Similar to WRKY39v2 - superfamily of TFs having WRKY and zinc finger domains.;Transcript_evidence=AK119593 (DDBJ%2C Best hit);ORF_evidence=NP_001151984.1 (RefSeq);NIAS_FLcDNA=002-117-D06;Oryzabase=6552;TENOR=Os02t0265200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	9446779	9446956	.	+	.	Parent=Os02t0265200-02
Chr02	irgsp1_rep	CDS	9446957	9447430	.	+	0	Parent=Os02t0265200-02
Chr02	irgsp1_rep	three_prime_UTR	9447431	9447673	.	+	.	Parent=Os02t0265200-02
Chr02	irgsp1_rep	three_prime_UTR	9447758	9448683	.	+	.	Parent=Os02t0265200-02
Chr02	irgsp1_rep	mRNA	9449342	9450315	.	+	.	ID=Os02t0265300-01;Name=Os02t0265300-01;Locus_id=Os02g0265300;Note=Protein of unknown function DUF3778 domain containing protein.;Transcript_evidence=AK241586 (DDBJ%2C Best hit);ORF_evidence=NP_001172890.1 (RefSeq);InterPro=Protein of unknown function DUF3778 (IPR022256);NIAS_FLcDNA=J065182E15;TENOR=Os02t0265300-01;KEGG=Os02t0265300-01
Chr02	irgsp1_rep	five_prime_UTR	9449342	9449459	.	+	.	Parent=Os02t0265300-01
Chr02	irgsp1_rep	five_prime_UTR	9449466	9449528	.	+	.	Parent=Os02t0265300-01
Chr02	irgsp1_rep	CDS	9449529	9450284	.	+	0	Parent=Os02t0265300-01
Chr02	irgsp1_rep	three_prime_UTR	9450285	9450315	.	+	.	Parent=Os02t0265300-01
Chr02	irgsp1_rep	mRNA	9458447	9463762	.	-	.	ID=Os02t0265400-01;Name=Os02t0265400-01;Locus_id=Os02g0265400;Note=Similar to Vacuolar protein sorting 29 (Vesicle protein sorting 29) (hVPS29) (PEP11). Splice isoform 2.;Transcript_evidence=AK060027 (DDBJ%2C Best hit);ORF_evidence=NP_001147749.1 (RefSeq);GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Phosphodiesterase MJ0936 (IPR000979),Calcineurin-like phosphoesterase superfamily domain (IPR024654);NIAS_FLcDNA=006-303-D07;TENOR=Os02t0265400-01
Chr02	irgsp1_rep	five_prime_UTR	9463485	9463762	.	-	.	Parent=Os02t0265400-01
Chr02	irgsp1_rep	CDS	9463353	9463484	.	-	0	Parent=Os02t0265400-01
Chr02	irgsp1_rep	CDS	9460717	9460854	.	-	0	Parent=Os02t0265400-01
Chr02	irgsp1_rep	CDS	9458649	9458945	.	-	0	Parent=Os02t0265400-01
Chr02	irgsp1_rep	three_prime_UTR	9458447	9458648	.	-	.	Parent=Os02t0265400-01
Chr02	irgsp1_rep	mRNA	9458448	9463658	.	-	.	ID=Os02t0265400-02;Name=Os02t0265400-02;Locus_id=Os02g0265400;Note=Similar to Vacuolar protein sorting 29 (Vesicle protein sorting 29) (hVPS29) (PEP11). Splice isoform 2.;Transcript_evidence=AK071757 (DDBJ%2C Best hit);ORF_evidence=NP_001147749.1 (RefSeq);GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Phosphodiesterase MJ0936 (IPR000979),Calcineurin-like phosphoesterase superfamily domain (IPR024654);NIAS_FLcDNA=J023113N03;TENOR=Os02t0265400-02
Chr02	irgsp1_rep	five_prime_UTR	9463485	9463658	.	-	.	Parent=Os02t0265400-02
Chr02	irgsp1_rep	CDS	9463353	9463484	.	-	0	Parent=Os02t0265400-02
Chr02	irgsp1_rep	CDS	9460717	9460854	.	-	0	Parent=Os02t0265400-02
Chr02	irgsp1_rep	CDS	9458649	9458945	.	-	0	Parent=Os02t0265400-02
Chr02	irgsp1_rep	three_prime_UTR	9458448	9458648	.	-	.	Parent=Os02t0265400-02
Chr02	irgsp1_rep	mRNA	9486437	9494275	.	+	.	ID=Os02t0265700-01;Name=Os02t0265700-01;Locus_id=Os02g0265700;Note=Hypothetical conserved gene.;Transcript_evidence=AK100882 (DDBJ%2C Best hit);ORF_evidence=Q6ETX6 (UniProt);NIAS_FLcDNA=J023127J11;Expression=AK100882;TENOR=Os02t0265700-01;KEGG=Os02t0265700-01
Chr02	irgsp1_rep	five_prime_UTR	9486437	9486507	.	+	.	Parent=Os02t0265700-01
Chr02	irgsp1_rep	CDS	9486508	9486670	.	+	0	Parent=Os02t0265700-01
Chr02	irgsp1_rep	CDS	9489156	9489523	.	+	2	Parent=Os02t0265700-01
Chr02	irgsp1_rep	three_prime_UTR	9489524	9490896	.	+	.	Parent=Os02t0265700-01
Chr02	irgsp1_rep	three_prime_UTR	9491390	9492353	.	+	.	Parent=Os02t0265700-01
Chr02	irgsp1_rep	three_prime_UTR	9492440	9494275	.	+	.	Parent=Os02t0265700-01
Chr02	irgsp1_rep	mRNA	9493418	9494211	.	+	.	ID=Os02t0265700-02;Name=Os02t0265700-02;Locus_id=Os02g0265700;Note=Hypothetical conserved gene.;Transcript_evidence=AK058601 (DDBJ%2C Best hit);ORF_evidence=Q6ETX6 (UniProt);NIAS_FLcDNA=001-017-H08;Expression=AK058601;TENOR=Os02t0265700-02;KEGG=Os02t0265700-02
Chr02	irgsp1_rep	five_prime_UTR	9493418	9493418	.	+	.	Parent=Os02t0265700-02
Chr02	irgsp1_rep	CDS	9493419	9493913	.	+	0	Parent=Os02t0265700-02
Chr02	irgsp1_rep	three_prime_UTR	9493914	9494211	.	+	.	Parent=Os02t0265700-02
Chr02	irgsp1_rep	mRNA	9495107	9495712	.	+	.	ID=Os02t0265800-00;Name=Os02t0265800-00;Locus_id=Os02g0265800;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A3A5B9 (UniProt);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);TENOR=Os02t0265800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	9495107	9495712	.	+	0	Parent=Os02t0265800-00
Chr02	irgsp1_rep	mRNA	9497687	9500218	.	+	.	ID=Os02t0265900-01;Name=Os02t0265900-01;Locus_id=Os02g0265900;Note=Reticulon family protein.;Transcript_evidence=AK059921 (DDBJ%2C Best hit);ORF_evidence=B6TG01 (UniProt);GO=Cellular Component: endoplasmic reticulum (GO:0005783);InterPro=Reticulon (IPR003388);NIAS_FLcDNA=006-209-G09;Expression=AK059921;TENOR=Os02t0265900-01;KEGG=Os02t0265900-01
Chr02	irgsp1_rep	five_prime_UTR	9497687	9497794	.	+	.	Parent=Os02t0265900-01
Chr02	irgsp1_rep	CDS	9497795	9497924	.	+	0	Parent=Os02t0265900-01
Chr02	irgsp1_rep	CDS	9499164	9499344	.	+	2	Parent=Os02t0265900-01
Chr02	irgsp1_rep	CDS	9499421	9499562	.	+	1	Parent=Os02t0265900-01
Chr02	irgsp1_rep	CDS	9499659	9499728	.	+	0	Parent=Os02t0265900-01
Chr02	irgsp1_rep	CDS	9499822	9499991	.	+	2	Parent=Os02t0265900-01
Chr02	irgsp1_rep	three_prime_UTR	9499992	9500218	.	+	.	Parent=Os02t0265900-01
Chr02	irgsp1_rep	mRNA	9497692	9498877	.	+	.	ID=Os02t0265900-02;Name=Os02t0265900-02;Locus_id=Os02g0265900;Note=Hypothetical conserved gene.;Transcript_evidence=AK064290 (DDBJ%2C Best hit);ORF_evidence=A2X381 (UniProt);NIAS_FLcDNA=002-105-H05;Expression=AK064290;TENOR=Os02t0265900-02;KEGG=Os02t0265900-02
Chr02	irgsp1_rep	five_prime_UTR	9497692	9497794	.	+	.	Parent=Os02t0265900-02
Chr02	irgsp1_rep	CDS	9497795	9498031	.	+	0	Parent=Os02t0265900-02
Chr02	irgsp1_rep	three_prime_UTR	9498032	9498877	.	+	.	Parent=Os02t0265900-02
Chr02	irgsp1_rep	mRNA	9497736	9500232	.	+	.	ID=Os02t0265900-03;Name=Os02t0265900-03;Locus_id=Os02g0265900;Note=Reticulon family protein.;Transcript_evidence=AK104196 (DDBJ%2C Best hit);ORF_evidence=B6TG01 (UniProt);GO=Cellular Component: endoplasmic reticulum (GO:0005783);InterPro=Reticulon (IPR003388);NIAS_FLcDNA=006-303-H05;Expression=AK104196;TENOR=Os02t0265900-03;KEGG=Os02t0265900-03
Chr02	irgsp1_rep	five_prime_UTR	9497736	9497794	.	+	.	Parent=Os02t0265900-03
Chr02	irgsp1_rep	CDS	9497795	9497924	.	+	0	Parent=Os02t0265900-03
Chr02	irgsp1_rep	CDS	9499164	9499344	.	+	2	Parent=Os02t0265900-03
Chr02	irgsp1_rep	CDS	9499421	9499562	.	+	1	Parent=Os02t0265900-03
Chr02	irgsp1_rep	CDS	9499659	9499728	.	+	0	Parent=Os02t0265900-03
Chr02	irgsp1_rep	CDS	9499822	9499991	.	+	2	Parent=Os02t0265900-03
Chr02	irgsp1_rep	three_prime_UTR	9499992	9500232	.	+	.	Parent=Os02t0265900-03
Chr02	irgsp1_rep	mRNA	9497858	9500237	.	+	.	ID=Os02t0265900-04;Name=Os02t0265900-04;Locus_id=Os02g0265900;Note=Similar to Reticulon.;Transcript_evidence=AK072628 (DDBJ%2C Best hit);ORF_evidence=B6TG01 (UniProt);GO=Cellular Component: endoplasmic reticulum (GO:0005783);InterPro=Reticulon (IPR003388);NIAS_FLcDNA=J023130B01;Expression=AK072628;TENOR=Os02t0265900-04;KEGG=Os02t0265900-04
Chr02	irgsp1_rep	CDS	9497858	9497924	.	+	0	Parent=Os02t0265900-04
Chr02	irgsp1_rep	CDS	9499164	9499344	.	+	2	Parent=Os02t0265900-04
Chr02	irgsp1_rep	CDS	9499421	9499562	.	+	1	Parent=Os02t0265900-04
Chr02	irgsp1_rep	CDS	9499659	9499728	.	+	0	Parent=Os02t0265900-04
Chr02	irgsp1_rep	CDS	9499822	9499991	.	+	2	Parent=Os02t0265900-04
Chr02	irgsp1_rep	three_prime_UTR	9499992	9500237	.	+	.	Parent=Os02t0265900-04
Chr02	irgsp1_rep	mRNA	9502820	9505396	.	+	.	ID=Os02t0266000-01;Name=Os02t0266000-01;Locus_id=Os02g0266000;Note=Similar to N-(5'-phosphoribosyl)anthranilate isomerase.;Transcript_evidence=AK242246 (DDBJ%2C Best hit);ORF_evidence=C5XZK5 (UniProt);GO=Biological Process: tryptophan metabolic process (GO:0006568),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphoribosylanthranilate isomerase activity (GO:0004640);InterPro=N-(5&apos%3Bphosphoribosyl)anthranilate isomerase (PRAI) (IPR001240),Ribulose-phosphate binding barrel (IPR011060),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J075180O15;TENOR=Os02t0266000-01;KEGG=Os02t0266000-01 (EC:5.3.1.24)
Chr02	irgsp1_rep	five_prime_UTR	9502820	9502866	.	+	.	Parent=Os02t0266000-01
Chr02	irgsp1_rep	CDS	9502867	9502885	.	+	0	Parent=Os02t0266000-01
Chr02	irgsp1_rep	CDS	9503091	9503159	.	+	2	Parent=Os02t0266000-01
Chr02	irgsp1_rep	CDS	9503804	9504159	.	+	2	Parent=Os02t0266000-01
Chr02	irgsp1_rep	CDS	9504256	9504416	.	+	0	Parent=Os02t0266000-01
Chr02	irgsp1_rep	CDS	9504774	9505005	.	+	1	Parent=Os02t0266000-01
Chr02	irgsp1_rep	three_prime_UTR	9505006	9505396	.	+	.	Parent=Os02t0266000-01
Chr02	irgsp1_rep	mRNA	9505868	9509878	.	-	.	ID=Os02t0266100-02;Name=Os02t0266100-02;Locus_id=Os02g0266100;Note=Zinc finger%2C U1-C type domain containing protein.;Transcript_evidence=AK060957 (DDBJ%2C Best hit),AK073513 (DDBJ%2C Best hit);ORF_evidence=NP_567250.1 (RefSeq);NIAS_FLcDNA=006-201-G11,J033043C12;Expression=AK060957;TENOR=Os02t0266100-02;KEGG=Os02t0266100-02
Chr02	irgsp1_rep	five_prime_UTR	9509763	9509878	.	-	.	Parent=Os02t0266100-02
Chr02	irgsp1_rep	CDS	9509755	9509762	.	-	0	Parent=Os02t0266100-02
Chr02	irgsp1_rep	CDS	9509318	9509360	.	-	1	Parent=Os02t0266100-02
Chr02	irgsp1_rep	CDS	9508551	9508592	.	-	0	Parent=Os02t0266100-02
Chr02	irgsp1_rep	CDS	9508164	9508434	.	-	0	Parent=Os02t0266100-02
Chr02	irgsp1_rep	CDS	9506232	9506554	.	-	2	Parent=Os02t0266100-02
Chr02	irgsp1_rep	three_prime_UTR	9505868	9506231	.	-	.	Parent=Os02t0266100-02
Chr02	irgsp1_rep	mRNA	9510002	9514048	.	+	.	ID=Os02t0266200-01;Name=Os02t0266200-01;Locus_id=Os02g0266200;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK103371 (DDBJ%2C Best hit);ORF_evidence=A2X384 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033127A08;Expression=AK103371;TENOR=Os02t0266200-01;KEGG=Os02t0266200-01
Chr02	irgsp1_rep	five_prime_UTR	9510002	9510113	.	+	.	Parent=Os02t0266200-01
Chr02	irgsp1_rep	CDS	9510114	9510195	.	+	0	Parent=Os02t0266200-01
Chr02	irgsp1_rep	CDS	9510807	9512623	.	+	2	Parent=Os02t0266200-01
Chr02	irgsp1_rep	three_prime_UTR	9512624	9512828	.	+	.	Parent=Os02t0266200-01
Chr02	irgsp1_rep	three_prime_UTR	9513275	9514048	.	+	.	Parent=Os02t0266200-01
Chr02	irgsp1_rep	mRNA	9510032	9513958	.	+	.	ID=Os02t0266200-02;Name=Os02t0266200-02;Locus_id=Os02g0266200;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK099647 (DDBJ%2C Best hit);ORF_evidence=A2X384 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013064M09;Expression=AK099647;TENOR=Os02t0266200-02;KEGG=Os02t0266200-02
Chr02	irgsp1_rep	five_prime_UTR	9510032	9510113	.	+	.	Parent=Os02t0266200-02
Chr02	irgsp1_rep	CDS	9510114	9510195	.	+	0	Parent=Os02t0266200-02
Chr02	irgsp1_rep	CDS	9510807	9512623	.	+	2	Parent=Os02t0266200-02
Chr02	irgsp1_rep	three_prime_UTR	9512624	9512828	.	+	.	Parent=Os02t0266200-02
Chr02	irgsp1_rep	three_prime_UTR	9513275	9513958	.	+	.	Parent=Os02t0266200-02
Chr02	irgsp1_rep	mRNA	9514361	9518278	.	-	.	ID=Os02t0266300-01;Name=Os02t0266300-01;Locus_id=Os02g0266300;Note=Similar to Transient receptor potential cation channel subfamily A member 1 (Ankyrin-like with transmembrane domains protein 1) (Transformation sensitive-protein p120).;Transcript_evidence=AK071896 (DDBJ%2C Best hit);ORF_evidence=NP_566752.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=CbxX/CfqX (IPR000641),Ankyrin repeat (IPR002110),ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J013057J17;TENOR=Os02t0266300-01
Chr02	irgsp1_rep	five_prime_UTR	9518160	9518278	.	-	.	Parent=Os02t0266300-01
Chr02	irgsp1_rep	CDS	9518016	9518159	.	-	0	Parent=Os02t0266300-01
Chr02	irgsp1_rep	CDS	9516918	9517028	.	-	0	Parent=Os02t0266300-01
Chr02	irgsp1_rep	CDS	9516714	9516812	.	-	0	Parent=Os02t0266300-01
Chr02	irgsp1_rep	CDS	9516513	9516623	.	-	0	Parent=Os02t0266300-01
Chr02	irgsp1_rep	CDS	9516119	9516419	.	-	0	Parent=Os02t0266300-01
Chr02	irgsp1_rep	CDS	9515686	9515825	.	-	2	Parent=Os02t0266300-01
Chr02	irgsp1_rep	CDS	9514644	9515195	.	-	0	Parent=Os02t0266300-01
Chr02	irgsp1_rep	three_prime_UTR	9514361	9514643	.	-	.	Parent=Os02t0266300-01
Chr02	irgsp1_rep	mRNA	9514364	9518253	.	-	.	ID=Os02t0266300-02;Name=Os02t0266300-02;Locus_id=Os02g0266300;Note=Similar to Transient receptor potential cation channel subfamily A member 1 (Ankyrin-like with transmembrane domains protein 1) (Transformation sensitive-protein p120).;Transcript_evidence=AK104958 (DDBJ%2C Best hit);ORF_evidence=NP_566752.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=CbxX/CfqX (IPR000641),Ankyrin repeat (IPR002110),ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=001-114-F10;TENOR=Os02t0266300-02
Chr02	irgsp1_rep	five_prime_UTR	9518160	9518253	.	-	.	Parent=Os02t0266300-02
Chr02	irgsp1_rep	CDS	9518016	9518159	.	-	0	Parent=Os02t0266300-02
Chr02	irgsp1_rep	CDS	9516918	9517028	.	-	0	Parent=Os02t0266300-02
Chr02	irgsp1_rep	CDS	9516714	9516812	.	-	0	Parent=Os02t0266300-02
Chr02	irgsp1_rep	CDS	9516513	9516623	.	-	0	Parent=Os02t0266300-02
Chr02	irgsp1_rep	CDS	9516119	9516419	.	-	0	Parent=Os02t0266300-02
Chr02	irgsp1_rep	CDS	9515686	9515825	.	-	2	Parent=Os02t0266300-02
Chr02	irgsp1_rep	CDS	9514644	9515195	.	-	0	Parent=Os02t0266300-02
Chr02	irgsp1_rep	three_prime_UTR	9514364	9514643	.	-	.	Parent=Os02t0266300-02
Chr02	irgsp1_rep	mRNA	9523632	9532175	.	+	.	ID=Os02t0266500-01;Name=Os02t0266500-01;Locus_id=Os02g0266500;Note=tRNA(Ile)-lysidine/2-thiocytidine synthase domain containing protein.;Transcript_evidence=AK100307 (DDBJ%2C Best hit);ORF_evidence=B9F4X2 (UniProt);InterPro=tRNA(Ile)-lysidine/2-thiocytidine synthase (IPR011063),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J023078G11;TENOR=Os02t0266500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	9523632	9523652	.	+	.	Parent=Os02t0266500-01
Chr02	irgsp1_rep	CDS	9523653	9523866	.	+	0	Parent=Os02t0266500-01
Chr02	irgsp1_rep	CDS	9523945	9524157	.	+	2	Parent=Os02t0266500-01
Chr02	irgsp1_rep	CDS	9524373	9524457	.	+	2	Parent=Os02t0266500-01
Chr02	irgsp1_rep	CDS	9525876	9525894	.	+	1	Parent=Os02t0266500-01
Chr02	irgsp1_rep	three_prime_UTR	9525895	9526052	.	+	.	Parent=Os02t0266500-01
Chr02	irgsp1_rep	three_prime_UTR	9526413	9527368	.	+	.	Parent=Os02t0266500-01
Chr02	irgsp1_rep	three_prime_UTR	9529370	9530179	.	+	.	Parent=Os02t0266500-01
Chr02	irgsp1_rep	three_prime_UTR	9531107	9531273	.	+	.	Parent=Os02t0266500-01
Chr02	irgsp1_rep	three_prime_UTR	9531377	9532175	.	+	.	Parent=Os02t0266500-01
Chr02	irgsp1_rep	mRNA	9535430	9538420	.	-	.	ID=Os02t0266800-01;Name=Os02t0266800-01;Locus_id=Os02g0266800;CGSNL Gene Symbol=RITA1;CGSNL Gene Name=RICE TRANSCRIPTION ACTIVATOR 1;Oryzabase Gene Symbol Synonym(s)=OsbZIP20%2C RITA-1%2C RISBZ3;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 20%2C rice seed b-Zipper 3%2C rice transcription activator-1;Note=Transcriptional activator protein.;Transcript_evidence=AK070674 (DDBJ%2C Best hit);ORF_evidence=Q40724 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);NIAS_FLcDNA=J023063K11;Oryzabase=10109;Expression=AK070674;TENOR=Os02t0266800-01;KEGG=Os02t0266800-01
Chr02	irgsp1_rep	five_prime_UTR	9538301	9538420	.	-	.	Parent=Os02t0266800-01
Chr02	irgsp1_rep	CDS	9538127	9538300	.	-	0	Parent=Os02t0266800-01
Chr02	irgsp1_rep	CDS	9536976	9537081	.	-	0	Parent=Os02t0266800-01
Chr02	irgsp1_rep	CDS	9536519	9536678	.	-	2	Parent=Os02t0266800-01
Chr02	irgsp1_rep	CDS	9536288	9536363	.	-	1	Parent=Os02t0266800-01
Chr02	irgsp1_rep	CDS	9535992	9536117	.	-	0	Parent=Os02t0266800-01
Chr02	irgsp1_rep	CDS	9535620	9535874	.	-	0	Parent=Os02t0266800-01
Chr02	irgsp1_rep	three_prime_UTR	9535430	9535619	.	-	.	Parent=Os02t0266800-01
Chr02	irgsp1_rep	mRNA	9541034	9542540	.	+	.	ID=Os02t0266900-01;Name=Os02t0266900-01;Locus_id=Os02g0266900;Note=Conserved hypothetical protein.;Transcript_evidence=AK106502 (DDBJ%2C Best hit);ORF_evidence=A3A5C7 (UniProt);NIAS_FLcDNA=002-105-F04;TENOR=Os02t0266900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	9541034	9541035	.	+	.	Parent=Os02t0266900-01
Chr02	irgsp1_rep	CDS	9541036	9541287	.	+	0	Parent=Os02t0266900-01
Chr02	irgsp1_rep	three_prime_UTR	9541288	9542540	.	+	.	Parent=Os02t0266900-01
Chr02	irgsp1_rep	mRNA	9544181	9550570	.	+	.	ID=Os02t0267000-01;Name=Os02t0267000-01;Locus_id=Os02g0267000;Note=Similar to Signal peptidase I (EC 3.4.21.89) (Leader peptidase I).;Transcript_evidence=AK067325 (DDBJ%2C Best hit);ORF_evidence=XP_002883537.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: serine-type peptidase activity (GO:0008236);InterPro=Peptidase S26A%2C signal peptidase I (IPR000223),Peptidase S24/S26A/S26B/S26C%2C beta-ribbon domain (IPR011056),Peptidase S24/S26A/S26B/S26C (IPR015927),Peptidase S26 (IPR019533),Peptidase S26A%2C signal peptidase I%2C serine active site (IPR019756),Peptidase S26A%2C signal peptidase I%2C conserved site (IPR019758);NIAS_FLcDNA=J013100B19;Expression=AK067325;TENOR=Os02t0267000-01;KEGG=Os02t0267000-01 (EC:3.4.21.89)
Chr02	irgsp1_rep	five_prime_UTR	9544181	9544312	.	+	.	Parent=Os02t0267000-01
Chr02	irgsp1_rep	CDS	9544313	9544774	.	+	0	Parent=Os02t0267000-01
Chr02	irgsp1_rep	CDS	9548124	9548192	.	+	0	Parent=Os02t0267000-01
Chr02	irgsp1_rep	CDS	9548284	9548352	.	+	0	Parent=Os02t0267000-01
Chr02	irgsp1_rep	CDS	9549238	9549324	.	+	0	Parent=Os02t0267000-01
Chr02	irgsp1_rep	CDS	9549929	9549996	.	+	0	Parent=Os02t0267000-01
Chr02	irgsp1_rep	CDS	9550094	9550235	.	+	1	Parent=Os02t0267000-01
Chr02	irgsp1_rep	three_prime_UTR	9550236	9550570	.	+	.	Parent=Os02t0267000-01
Chr02	irgsp1_rep	mRNA	9551864	9553485	.	+	.	ID=Os02t0267200-00;Name=Os02t0267200-00;Locus_id=Os02g0267200;CGSNL Gene Symbol=EXPA13;CGSNL Gene Name=ALPHA-EXPANSIN 13;Oryzabase Gene Symbol Synonym(s)=OsEXPA13%2C OsEXP13%2C osaEXPa1.13;Oryzabase Gene Name Synonym(s)=expansin A13%2C Rice expansin-13%2C Expansin-A13%2C Alpha-expansin-13;Note=Alpha-expansin OsEXPA13.;Transcript_evidence=CT837828 (DDBJ%2C Best hit);ORF_evidence=Q4PR52 (UniProt);GO=Biological Process: plant-type cell wall organization (GO:0009664),Cellular Component: extracellular region (GO:0005576);InterPro=Expansin (IPR002963),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);Oryzabase=9376;TENOR=Os02t0267200-00;KEGG=Os02t0267200-00
Chr02	irgsp1_rep	five_prime_UTR	9551864	9551951	.	+	.	Parent=Os02t0267200-00
Chr02	irgsp1_rep	CDS	9551952	9552427	.	+	0	Parent=Os02t0267200-00
Chr02	irgsp1_rep	CDS	9552868	9553180	.	+	1	Parent=Os02t0267200-00
Chr02	irgsp1_rep	three_prime_UTR	9553181	9553485	.	+	.	Parent=Os02t0267200-00
Chr02	irgsp1_rep	mRNA	9552146	9553195	.	-	.	ID=Os02t0267350-00;Name=Os02t0267350-00;Locus_id=Os02g0267350;Note=Hypothetical gene.;Transcript_evidence=BT016845 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0267350-00
Chr02	irgsp1_rep	CDS	9552864	9553195	.	-	0	Parent=Os02t0267350-00
Chr02	irgsp1_rep	CDS	9552146	9552423	.	-	1	Parent=Os02t0267350-00
Chr02	irgsp1_rep	mRNA	9569705	9570573	.	+	.	ID=Os02t0267700-00;Name=Os02t0267700-00;Locus_id=Os02g0267700;CGSNL Gene Symbol=EXPA14;CGSNL Gene Name=ALPHA-EXPANSIN 14;Oryzabase Gene Symbol Synonym(s)=OsEXPA14%2C OsEXP14%2C osaEXPa1.11;Oryzabase Gene Name Synonym(s)=Rice expansin-14%2C Expansin-A14%2C Alpha-expansin-14;Note=Similar to Expansin-A14.;Transcript_evidence=DQ061056 (DDBJ%2C Best hit);ORF_evidence=Q4PR51 (UniProt);GO=Biological Process: plant-type cell wall organization (GO:0009664),Cellular Component: extracellular region (GO:0005576);InterPro=Expansin (IPR002963),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);Oryzabase=9377;TENOR=Os02t0267700-00
Chr02	irgsp1_rep	five_prime_UTR	9569705	9569706	.	+	.	Parent=Os02t0267700-00
Chr02	irgsp1_rep	CDS	9569707	9570152	.	+	0	Parent=Os02t0267700-00
Chr02	irgsp1_rep	CDS	9570262	9570573	.	+	1	Parent=Os02t0267700-00
Chr02	irgsp1_rep	mRNA	9572091	9574891	.	-	.	ID=Os02t0267832-00;Name=Os02t0267832-00;Locus_id=Os02g0267832;Note=Hypothetical protein.;Transcript_evidence=BT064922 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0267832-00
Chr02	irgsp1_rep	CDS	9574653	9574891	.	-	0	Parent=Os02t0267832-00
Chr02	irgsp1_rep	CDS	9572091	9572259	.	-	1	Parent=Os02t0267832-00
Chr02	irgsp1_rep	mRNA	9574547	9575502	.	+	.	ID=Os02t0267900-00;Name=Os02t0267900-00;Locus_id=Os02g0267900;CGSNL Gene Symbol=EXPA24;CGSNL Gene Name=ALPHA-EXPANSIN 24;Oryzabase Gene Symbol Synonym(s)=OsEXPA24%2C OsEXP24%2C osaEXPa1.10;Oryzabase Gene Name Synonym(s)=Rice expansin-24%2C Expansin-A24%2C Alpha-expansin-24;Note=Similar to Expansin-A24.;Transcript_evidence=DQ061065 (DDBJ%2C Best hit);ORF_evidence=Q4PR42 (UniProt);GO=Biological Process: plant-type cell wall organization (GO:0009664),Cellular Component: extracellular region (GO:0005576);InterPro=Expansin (IPR002963),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);Oryzabase=9388;TENOR=Os02t0267900-00;KEGG=Os02t0267900-00
Chr02	irgsp1_rep	five_prime_UTR	9574547	9574552	.	+	.	Parent=Os02t0267900-00
Chr02	irgsp1_rep	CDS	9574553	9575076	.	+	0	Parent=Os02t0267900-00
Chr02	irgsp1_rep	CDS	9575173	9575485	.	+	1	Parent=Os02t0267900-00
Chr02	irgsp1_rep	three_prime_UTR	9575486	9575502	.	+	.	Parent=Os02t0267900-00
Chr02	irgsp1_rep	mRNA	9578459	9578763	.	-	.	ID=Os02t0267975-00;Name=Os02t0267975-00;Locus_id=Os02g0267975;Note=Hypothetical protein.;Transcript_evidence=BT064922 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0267975-00
Chr02	irgsp1_rep	CDS	9578459	9578763	.	-	0	Parent=Os02t0267975-00
Chr02	irgsp1_rep	mRNA	9578475	9579432	.	+	.	ID=Os02t0268050-00;Name=Os02t0268050-00;Locus_id=Os02g0268050;CGSNL Gene Symbol=EXPA23;CGSNL Gene Name=ALPHA-EXPANSIN 23;Oryzabase Gene Symbol Synonym(s)=OsEXPA23%2C OsEXP23%2C osaEXPa1.12;Oryzabase Gene Name Synonym(s)=Rice expansin-23%2C Expansin-A23%2C Alpha-expansin-23;Note=Similar to Expansin-A23.;Transcript_evidence=DQ061064 (DDBJ%2C Best hit);ORF_evidence=Q4PR43 (UniProt);GO=Biological Process: plant-type cell wall organization (GO:0009664),Cellular Component: extracellular region (GO:0005576);InterPro=Expansin (IPR002963),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);Oryzabase=9387;TENOR=Os02t0268050-00;KEGG=Os02t0268050-00
Chr02	irgsp1_rep	five_prime_UTR	9578475	9578475	.	+	.	Parent=Os02t0268050-00
Chr02	irgsp1_rep	CDS	9578476	9578948	.	+	0	Parent=Os02t0268050-00
Chr02	irgsp1_rep	CDS	9579057	9579369	.	+	1	Parent=Os02t0268050-00
Chr02	irgsp1_rep	three_prime_UTR	9579370	9579432	.	+	.	Parent=Os02t0268050-00
Chr02	irgsp1_rep	mRNA	9580486	9582483	.	+	.	ID=Os02t0268100-01;Name=Os02t0268100-01;Locus_id=Os02g0268100;CGSNL Gene Symbol=GLUB5;CGSNL Gene Name=GLUTELIN B5;Oryzabase Gene Symbol Synonym(s)=GluB5%2C GLU2.3;Oryzabase Gene Name Synonym(s)=gluten 2.3;Note=Similar to Glutelin (Fragment).;Transcript_evidence=AK243000 (DDBJ%2C Best hit),AK107238 (DDBJ%2C Best hit);ORF_evidence=Q6ERU3 (UniProt);GO=Biological Process: defense response (GO:0006952),Cellular Component: cell outer membrane (GO:0009279),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Lipoprotein%2C type 6 (IPR001800),11-S seed storage protein%2C plant (IPR006044),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),11-S seed storage protein%2C conserved site (IPR022379);NIAS_FLcDNA=J090095N02,002-125-F02;Oryzabase=8997;TENOR=Os02t0268100-01;KEGG=Os02t0268100-01
Chr02	irgsp1_rep	five_prime_UTR	9580486	9580525	.	+	.	Parent=Os02t0268100-01
Chr02	irgsp1_rep	CDS	9580526	9580853	.	+	0	Parent=Os02t0268100-01
Chr02	irgsp1_rep	CDS	9580964	9581226	.	+	2	Parent=Os02t0268100-01
Chr02	irgsp1_rep	CDS	9581334	9581819	.	+	0	Parent=Os02t0268100-01
Chr02	irgsp1_rep	CDS	9581936	9582361	.	+	0	Parent=Os02t0268100-01
Chr02	irgsp1_rep	three_prime_UTR	9582362	9582483	.	+	.	Parent=Os02t0268100-01
Chr02	irgsp1_rep	mRNA	9586034	9587998	.	-	.	ID=Os02t0268300-00;Name=Os02t0268300-00;Locus_id=Os02g0268300;CGSNL Gene Symbol=GLUB4;CGSNL Gene Name=GLUTELIN B4;Oryzabase Gene Symbol Synonym(s)=GluB4%2C GluB-4%2C GluB-5%2C GluB5%2C GluB-4/5;Note=Similar to Glutelin (Fragment).;Transcript_evidence=X14393 (DDBJ%2C Best hit);ORF_evidence=P14614 (UniProt);GO=Biological Process: defense response (GO:0006952),Cellular Component: cell outer membrane (GO:0009279),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Lipoprotein%2C type 6 (IPR001800),11-S seed storage protein%2C plant (IPR006044),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),11-S seed storage protein%2C conserved site (IPR022379);Oryzabase=8996;Expression=X14393;TENOR=Os02t0268300-00;KEGG=Os02t0268300-00
Chr02	irgsp1_rep	five_prime_UTR	9587973	9587998	.	-	.	Parent=Os02t0268300-00
Chr02	irgsp1_rep	CDS	9587645	9587972	.	-	0	Parent=Os02t0268300-00
Chr02	irgsp1_rep	CDS	9587272	9587534	.	-	2	Parent=Os02t0268300-00
Chr02	irgsp1_rep	CDS	9586679	9587164	.	-	0	Parent=Os02t0268300-00
Chr02	irgsp1_rep	CDS	9586137	9586562	.	-	0	Parent=Os02t0268300-00
Chr02	irgsp1_rep	three_prime_UTR	9586034	9586136	.	-	.	Parent=Os02t0268300-00
Chr02	irgsp1_rep	mRNA	9589066	9590023	.	-	.	ID=Os02t0268400-00;Name=Os02t0268400-00;Locus_id=Os02g0268400;Oryzabase Gene Symbol Synonym(s)=EXPA23%2C OsEXPA23;Oryzabase Gene Name Synonym(s)=ALPHA-EXPANSIN 23%2C Expansin-A23%2C Alpha-expansin-23;Note=Similar to Expansin-A23.;Transcript_evidence=DQ061064 (DDBJ%2C Best hit);ORF_evidence=Q4PR43 (UniProt);GO=Biological Process: plant-type cell wall organization (GO:0009664),Cellular Component: extracellular region (GO:0005576);InterPro=Expansin (IPR002963),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);Oryzabase=21858;TENOR=Os02t0268400-00;KEGG=Os02t0268400-00
Chr02	irgsp1_rep	five_prime_UTR	9590023	9590023	.	-	.	Parent=Os02t0268400-00
Chr02	irgsp1_rep	CDS	9589550	9590022	.	-	0	Parent=Os02t0268400-00
Chr02	irgsp1_rep	CDS	9589129	9589441	.	-	1	Parent=Os02t0268400-00
Chr02	irgsp1_rep	three_prime_UTR	9589066	9589128	.	-	.	Parent=Os02t0268400-00
Chr02	irgsp1_rep	mRNA	9589735	9590039	.	+	.	ID=Os02t0268500-00;Name=Os02t0268500-00;Locus_id=Os02g0268500;Note=Hypothetical protein.;Transcript_evidence=BT064922 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0268500-00
Chr02	irgsp1_rep	CDS	9589735	9590039	.	+	0	Parent=Os02t0268500-00
Chr02	irgsp1_rep	mRNA	9600237	9601245	.	-	.	ID=Os02t0268600-00;Name=Os02t0268600-00;Locus_id=Os02g0268600;CGSNL Gene Symbol=EXPA22;CGSNL Gene Name=ALPHA-EXPANSIN 22;Oryzabase Gene Symbol Synonym(s)=OsEXPA22%2C OsEXP22%2C osaEXPa1.9;Oryzabase Gene Name Synonym(s)=expansin A22%2C Rice expansin-22%2C Expansin-A22%2C Alpha-expansin-22;Note=Similar to Expansin-A22.;Transcript_evidence=DQ061063 (DDBJ%2C Best hit);ORF_evidence=Q4PR44 (UniProt);GO=Biological Process: plant-type cell wall organization (GO:0009664),Cellular Component: extracellular region (GO:0005576);InterPro=Expansin (IPR002963),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);Oryzabase=9385;TENOR=Os02t0268600-00;KEGG=Os02t0268600-00
Chr02	irgsp1_rep	five_prime_UTR	9601244	9601245	.	-	.	Parent=Os02t0268600-00
Chr02	irgsp1_rep	CDS	9600732	9601243	.	-	0	Parent=Os02t0268600-00
Chr02	irgsp1_rep	CDS	9600305	9600617	.	-	1	Parent=Os02t0268600-00
Chr02	irgsp1_rep	three_prime_UTR	9600237	9600304	.	-	.	Parent=Os02t0268600-00
Chr02	irgsp1_rep	mRNA	9600298	9601000	.	+	.	ID=Os02t0268675-00;Name=Os02t0268675-00;Locus_id=Os02g0268675;Note=Hypothetical protein.;Transcript_evidence=BT016845 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0268675-00
Chr02	irgsp1_rep	five_prime_UTR	9600298	9600568	.	+	.	Parent=Os02t0268675-00
Chr02	irgsp1_rep	CDS	9600569	9600620	.	+	0	Parent=Os02t0268675-00
Chr02	irgsp1_rep	CDS	9600735	9601000	.	+	2	Parent=Os02t0268675-00
Chr02	irgsp1_rep	mRNA	9617858	9623804	.	-	.	ID=Os02t0269000-01;Name=Os02t0269000-01;Locus_id=Os02g0269000;Note=Protein of unknown function DUF502 family protein.;Transcript_evidence=AK071119 (DDBJ%2C Best hit);ORF_evidence=B6SU58 (UniProt);InterPro=Protein of unknown function DUF502 (IPR007462);NIAS_FLcDNA=J023082M07;Expression=AK071119;TENOR=Os02t0269000-01;KEGG=Os02t0269000-01
Chr02	irgsp1_rep	five_prime_UTR	9623762	9623804	.	-	.	Parent=Os02t0269000-01
Chr02	irgsp1_rep	CDS	9623540	9623761	.	-	0	Parent=Os02t0269000-01
Chr02	irgsp1_rep	CDS	9623351	9623403	.	-	0	Parent=Os02t0269000-01
Chr02	irgsp1_rep	CDS	9621785	9621894	.	-	1	Parent=Os02t0269000-01
Chr02	irgsp1_rep	CDS	9620243	9620410	.	-	2	Parent=Os02t0269000-01
Chr02	irgsp1_rep	CDS	9620070	9620167	.	-	2	Parent=Os02t0269000-01
Chr02	irgsp1_rep	CDS	9618433	9618559	.	-	0	Parent=Os02t0269000-01
Chr02	irgsp1_rep	CDS	9618244	9618341	.	-	2	Parent=Os02t0269000-01
Chr02	irgsp1_rep	three_prime_UTR	9617858	9618243	.	-	.	Parent=Os02t0269000-01
Chr02	irgsp1_rep	mRNA	9641620	9642458	.	+	.	ID=Os02t0269200-01;Name=Os02t0269200-01;Locus_id=Os02g0269200;Note=Dynein light chain%2C type 1 family protein.;Transcript_evidence=AK066218 (DDBJ%2C Best hit);ORF_evidence=NP_001152219.1 (RefSeq);GO=Biological Process: microtubule-based process (GO:0007017),Cellular Component: microtubule associated complex (GO:0005875);InterPro=Dynein light chain%2C type 1/2 (IPR001372);NIAS_FLcDNA=J013055L22;Expression=AK066218;TENOR=Os02t0269200-01;KEGG=Os02t0269200-01
Chr02	irgsp1_rep	five_prime_UTR	9641620	9641776	.	+	.	Parent=Os02t0269200-01
Chr02	irgsp1_rep	CDS	9641777	9641913	.	+	0	Parent=Os02t0269200-01
Chr02	irgsp1_rep	CDS	9642043	9642205	.	+	1	Parent=Os02t0269200-01
Chr02	irgsp1_rep	three_prime_UTR	9642206	9642458	.	+	.	Parent=Os02t0269200-01
Chr02	irgsp1_rep	mRNA	9650745	9656251	.	+	.	ID=Os02t0269400-00;Name=Os02t0269400-00;Locus_id=Os02g0269400;Note=Hypothetical protein.;Transcript_evidence=tplb0021i12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0269400-00
Chr02	irgsp1_rep	five_prime_UTR	9650745	9651293	.	+	.	Parent=Os02t0269400-00
Chr02	irgsp1_rep	five_prime_UTR	9651381	9651566	.	+	.	Parent=Os02t0269400-00
Chr02	irgsp1_rep	five_prime_UTR	9651685	9651826	.	+	.	Parent=Os02t0269400-00
Chr02	irgsp1_rep	five_prime_UTR	9652036	9652178	.	+	.	Parent=Os02t0269400-00
Chr02	irgsp1_rep	five_prime_UTR	9652291	9652475	.	+	.	Parent=Os02t0269400-00
Chr02	irgsp1_rep	five_prime_UTR	9653929	9653971	.	+	.	Parent=Os02t0269400-00
Chr02	irgsp1_rep	CDS	9653972	9654565	.	+	0	Parent=Os02t0269400-00
Chr02	irgsp1_rep	CDS	9656002	9656013	.	+	0	Parent=Os02t0269400-00
Chr02	irgsp1_rep	three_prime_UTR	9656014	9656251	.	+	.	Parent=Os02t0269400-00
Chr02	irgsp1_rep	mRNA	9650760	9656236	.	-	.	ID=Os02t0269600-00;Name=Os02t0269600-00;Locus_id=Os02g0269600;Oryzabase Gene Symbol Synonym(s)=OsSub13%2C SUB13;Oryzabase Gene Name Synonym(s)=Subtilisin 13%2C SUBTILISIN 13;Note=Similar to Subtilase.;Transcript_evidence=ab initio prediction;ORF_evidence=Q9FVC7 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);Oryzabase=20102;TENOR=Os02t0269600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	9656152	9656236	.	-	0	Parent=Os02t0269600-00
Chr02	irgsp1_rep	CDS	9654712	9654867	.	-	2	Parent=Os02t0269600-00
Chr02	irgsp1_rep	CDS	9653944	9654563	.	-	2	Parent=Os02t0269600-00
Chr02	irgsp1_rep	CDS	9652324	9652397	.	-	0	Parent=Os02t0269600-00
Chr02	irgsp1_rep	CDS	9652015	9652236	.	-	1	Parent=Os02t0269600-00
Chr02	irgsp1_rep	CDS	9651690	9651807	.	-	1	Parent=Os02t0269600-00
Chr02	irgsp1_rep	CDS	9651401	9651572	.	-	0	Parent=Os02t0269600-00
Chr02	irgsp1_rep	CDS	9650760	9651307	.	-	2	Parent=Os02t0269600-00
Chr02	irgsp1_rep	mRNA	9660237	9660760	.	+	.	ID=Os02t0269650-01;Name=Os02t0269650-01;Locus_id=Os02g0269650;Note=Hypothetical gene.;Transcript_evidence=AK241275 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065134K19;Oryzabase=22555;TENOR=Os02t0269650-01;KEGG=Os02t0269650-01
Chr02	irgsp1_rep	CDS	9660237	9660689	.	+	0	Parent=Os02t0269650-01
Chr02	irgsp1_rep	three_prime_UTR	9660690	9660760	.	+	.	Parent=Os02t0269650-01
Chr02	irgsp1_rep	mRNA	9708752	9709903	.	+	.	ID=Os02t0270100-00;Name=Os02t0270100-00;Locus_id=Os02g0270100;Note=Hypothetical gene.;Transcript_evidence=CT837976 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os02t0270100-00;KEGG=Os02t0270100-00
Chr02	irgsp1_rep	five_prime_UTR	9708752	9709070	.	+	.	Parent=Os02t0270100-00
Chr02	irgsp1_rep	CDS	9709071	9709511	.	+	0	Parent=Os02t0270100-00
Chr02	irgsp1_rep	three_prime_UTR	9709512	9709903	.	+	.	Parent=Os02t0270100-00
Chr02	irgsp1_rep	mRNA	9712632	9715959	.	-	.	ID=Os02t0270200-01;Name=Os02t0270200-01;Locus_id=Os02g0270200;Oryzabase Gene Symbol Synonym(s)=OsSub14%2C SUB14;Oryzabase Gene Name Synonym(s)=Subtilisin 14%2C SUBTILISIN 14;Note=Similar to Subtilase.;Transcript_evidence=AK110825 (DDBJ%2C Best hit);ORF_evidence=Q9FVC7 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500);NIAS_FLcDNA=002-171-H07;Oryzabase=20103;Expression=AK110825;TENOR=Os02t0270200-01;KEGG=Os02t0270200-01
Chr02	irgsp1_rep	five_prime_UTR	9715920	9715959	.	-	.	Parent=Os02t0270200-01
Chr02	irgsp1_rep	CDS	9715830	9715919	.	-	0	Parent=Os02t0270200-01
Chr02	irgsp1_rep	CDS	9715636	9715727	.	-	0	Parent=Os02t0270200-01
Chr02	irgsp1_rep	CDS	9715453	9715550	.	-	1	Parent=Os02t0270200-01
Chr02	irgsp1_rep	CDS	9715209	9715364	.	-	2	Parent=Os02t0270200-01
Chr02	irgsp1_rep	CDS	9714489	9715111	.	-	2	Parent=Os02t0270200-01
Chr02	irgsp1_rep	CDS	9714311	9714378	.	-	0	Parent=Os02t0270200-01
Chr02	irgsp1_rep	CDS	9713909	9714173	.	-	1	Parent=Os02t0270200-01
Chr02	irgsp1_rep	CDS	9713696	9713794	.	-	0	Parent=Os02t0270200-01
Chr02	irgsp1_rep	three_prime_UTR	9713677	9713695	.	-	.	Parent=Os02t0270200-01
Chr02	irgsp1_rep	three_prime_UTR	9713388	9713559	.	-	.	Parent=Os02t0270200-01
Chr02	irgsp1_rep	three_prime_UTR	9712632	9713290	.	-	.	Parent=Os02t0270200-01
Chr02	irgsp1_rep	mRNA	9712737	9715552	.	+	.	ID=Os02t0270350-00;Name=Os02t0270350-00;Locus_id=Os02g0270350;Note=Hypothetical protein.;Transcript_evidence=tplb0021i12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0270350-00
Chr02	irgsp1_rep	five_prime_UTR	9712737	9713280	.	+	.	Parent=Os02t0270350-00
Chr02	irgsp1_rep	five_prime_UTR	9713381	9713650	.	+	.	Parent=Os02t0270350-00
Chr02	irgsp1_rep	five_prime_UTR	9713894	9714026	.	+	.	Parent=Os02t0270350-00
Chr02	irgsp1_rep	CDS	9714027	9714238	.	+	0	Parent=Os02t0270350-00
Chr02	irgsp1_rep	CDS	9714474	9714792	.	+	1	Parent=Os02t0270350-00
Chr02	irgsp1_rep	three_prime_UTR	9714793	9715181	.	+	.	Parent=Os02t0270350-00
Chr02	irgsp1_rep	three_prime_UTR	9715264	9715358	.	+	.	Parent=Os02t0270350-00
Chr02	irgsp1_rep	three_prime_UTR	9715440	9715552	.	+	.	Parent=Os02t0270350-00
Chr02	irgsp1_rep	mRNA	9757895	9759511	.	-	.	ID=Os02t0270800-00;Name=Os02t0270800-00;Locus_id=Os02g0270800;Oryzabase Gene Symbol Synonym(s)=OsSub15%2C SUB15;Oryzabase Gene Name Synonym(s)=Subtilisin 15%2C SUBTILISIN 15;Note=Peptidase S8/S53%2C subtilisin/kexin/sedolisin domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3A5A2 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);Oryzabase=20104;TENOR=Os02t0270800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	9759471	9759511	.	-	0	Parent=Os02t0270800-00
Chr02	irgsp1_rep	CDS	9759058	9759333	.	-	1	Parent=Os02t0270800-00
Chr02	irgsp1_rep	CDS	9758831	9758948	.	-	1	Parent=Os02t0270800-00
Chr02	irgsp1_rep	CDS	9758516	9758711	.	-	0	Parent=Os02t0270800-00
Chr02	irgsp1_rep	CDS	9757895	9758442	.	-	2	Parent=Os02t0270800-00
Chr02	irgsp1_rep	mRNA	9764691	9770197	.	-	.	ID=Os02t0270900-00;Name=Os02t0270900-00;Locus_id=Os02g0270900;Oryzabase Gene Symbol Synonym(s)=OsSub16%2C SUB16;Oryzabase Gene Name Synonym(s)=Subtilisin 16%2C SUBTILISIN 16;Note=Similar to Subtilase.;Transcript_evidence=ab initio prediction;ORF_evidence=Q9FVC7 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);Oryzabase=20105;TENOR=Os02t0270900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	9770114	9770197	.	-	0	Parent=Os02t0270900-00
Chr02	irgsp1_rep	CDS	9769918	9770009	.	-	0	Parent=Os02t0270900-00
Chr02	irgsp1_rep	CDS	9769695	9769792	.	-	1	Parent=Os02t0270900-00
Chr02	irgsp1_rep	CDS	9767131	9767283	.	-	2	Parent=Os02t0270900-00
Chr02	irgsp1_rep	CDS	9766288	9766907	.	-	2	Parent=Os02t0270900-00
Chr02	irgsp1_rep	CDS	9766102	9766169	.	-	0	Parent=Os02t0270900-00
Chr02	irgsp1_rep	CDS	9765715	9765990	.	-	1	Parent=Os02t0270900-00
Chr02	irgsp1_rep	CDS	9765471	9765588	.	-	1	Parent=Os02t0270900-00
Chr02	irgsp1_rep	CDS	9765153	9765341	.	-	0	Parent=Os02t0270900-00
Chr02	irgsp1_rep	CDS	9764691	9764876	.	-	0	Parent=Os02t0270900-00
Chr02	irgsp1_rep	mRNA	9778410	9782065	.	-	.	ID=Os02t0271000-01;Name=Os02t0271000-01;Locus_id=Os02g0271000;Oryzabase Gene Symbol Synonym(s)=OsSub17%2C SUB17;Oryzabase Gene Name Synonym(s)=Subtilisin 17%2C SUBTILISIN 17;Note=Similar to Subtilase.;Transcript_evidence=AK072092 (DDBJ%2C Best hit);ORF_evidence=Q9FVC7 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C His-active site (IPR022398),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);NIAS_FLcDNA=J013118B21;Oryzabase=20106;Expression=AK072092;TENOR=Os02t0271000-01;KEGG=Os02t0271000-01
Chr02	irgsp1_rep	five_prime_UTR	9781914	9782065	.	-	.	Parent=Os02t0271000-01
Chr02	irgsp1_rep	CDS	9781842	9781913	.	-	0	Parent=Os02t0271000-01
Chr02	irgsp1_rep	CDS	9781643	9781734	.	-	0	Parent=Os02t0271000-01
Chr02	irgsp1_rep	CDS	9781430	9781527	.	-	1	Parent=Os02t0271000-01
Chr02	irgsp1_rep	CDS	9781159	9781314	.	-	2	Parent=Os02t0271000-01
Chr02	irgsp1_rep	CDS	9780422	9781047	.	-	2	Parent=Os02t0271000-01
Chr02	irgsp1_rep	CDS	9780189	9780256	.	-	0	Parent=Os02t0271000-01
Chr02	irgsp1_rep	CDS	9779653	9779916	.	-	1	Parent=Os02t0271000-01
Chr02	irgsp1_rep	CDS	9779424	9779541	.	-	1	Parent=Os02t0271000-01
Chr02	irgsp1_rep	CDS	9779131	9779302	.	-	0	Parent=Os02t0271000-01
Chr02	irgsp1_rep	CDS	9778498	9779048	.	-	2	Parent=Os02t0271000-01
Chr02	irgsp1_rep	three_prime_UTR	9778410	9778497	.	-	.	Parent=Os02t0271000-01
Chr02	irgsp1_rep	mRNA	9826266	9829343	.	-	.	ID=Os02t0271600-00;Name=Os02t0271600-00;Locus_id=Os02g0271600;Oryzabase Gene Symbol Synonym(s)=OsSub18%2C SUB18;Oryzabase Gene Name Synonym(s)=Subtilisin 18%2C SUBTILISIN 18;Note=Similar to Subtilase.;Transcript_evidence=AK363588 (DDBJ);ORF_evidence=Q9FVC7 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);Oryzabase=20107;TENOR=Os02t0271600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	9829252	9829343	.	-	.	Parent=Os02t0271600-00
Chr02	irgsp1_rep	five_prime_UTR	9829113	9829153	.	-	.	Parent=Os02t0271600-00
Chr02	irgsp1_rep	CDS	9829052	9829112	.	-	0	Parent=Os02t0271600-00
Chr02	irgsp1_rep	CDS	9828800	9828955	.	-	2	Parent=Os02t0271600-00
Chr02	irgsp1_rep	CDS	9828065	9828693	.	-	2	Parent=Os02t0271600-00
Chr02	irgsp1_rep	CDS	9827894	9827964	.	-	0	Parent=Os02t0271600-00
Chr02	irgsp1_rep	CDS	9827514	9827780	.	-	1	Parent=Os02t0271600-00
Chr02	irgsp1_rep	CDS	9827227	9827344	.	-	1	Parent=Os02t0271600-00
Chr02	irgsp1_rep	CDS	9826921	9827092	.	-	0	Parent=Os02t0271600-00
Chr02	irgsp1_rep	CDS	9826267	9826814	.	-	2	Parent=Os02t0271600-00
Chr02	irgsp1_rep	three_prime_UTR	9826266	9826266	.	-	.	Parent=Os02t0271600-00
Chr02	irgsp1_rep	mRNA	9848231	9852383	.	+	.	ID=Os02t0271900-01;Name=Os02t0271900-01;Locus_id=Os02g0271900;Oryzabase Gene Name Synonym(s)=MYB domain protein;Note=Myb transcription factor domain containing protein.;Transcript_evidence=AK120913 (DDBJ%2C Best hit);ORF_evidence=Q5NKH8 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J023034G08;Oryzabase=15978;Expression=AK120913;TENOR=Os02t0271900-01;KEGG=Os02t0271900-01
Chr02	irgsp1_rep	five_prime_UTR	9848231	9848299	.	+	.	Parent=Os02t0271900-01
Chr02	irgsp1_rep	CDS	9848300	9848365	.	+	0	Parent=Os02t0271900-01
Chr02	irgsp1_rep	CDS	9848804	9848855	.	+	0	Parent=Os02t0271900-01
Chr02	irgsp1_rep	CDS	9849617	9849706	.	+	2	Parent=Os02t0271900-01
Chr02	irgsp1_rep	CDS	9849816	9849921	.	+	2	Parent=Os02t0271900-01
Chr02	irgsp1_rep	CDS	9850650	9850778	.	+	1	Parent=Os02t0271900-01
Chr02	irgsp1_rep	CDS	9850932	9852132	.	+	1	Parent=Os02t0271900-01
Chr02	irgsp1_rep	three_prime_UTR	9852133	9852383	.	+	.	Parent=Os02t0271900-01
Chr02	irgsp1_rep	mRNA	9867024	9868223	.	-	.	ID=Os02t0272100-00;Name=Os02t0272100-00;Locus_id=Os02g0272100;Oryzabase Gene Symbol Synonym(s)=OsFbox079%2C OsFbox79%2C Os_F0641;Oryzabase Gene Name Synonym(s)=F-box protein 79;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=tplb0029f14 (Wheat FLcDNA);ORF_evidence=Q6EST9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=16874;TENOR=Os02t0272100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	9867024	9868223	.	-	0	Parent=Os02t0272100-00
Chr02	irgsp1_rep	mRNA	9877605	9879302	.	+	.	ID=Os02t0272200-00;Name=Os02t0272200-00;Locus_id=Os02g0272200;CGSNL Gene Symbol=YUCCA12;CGSNL Gene Name=YUCCA-LIKE GENE 12;Oryzabase Gene Symbol Synonym(s)=OsYUCCA12%2C OsYUC12;Note=Similar to Flavin-binding monooxygenase-like family protein.;Transcript_evidence=tplb0009m23 (Wheat FLcDNA);ORF_evidence=Q2R929 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: flavin-containing monooxygenase activity (GO:0004499),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=Pyridine nucleotide-disulphide oxidoreductase%2C class-II (IPR000103),FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR013027),Flavin monooxygenase-like (IPR020946);Oryzabase=9110;TENOR=Os02t0272200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	9877605	9878216	.	+	0	Parent=Os02t0272200-00
Chr02	irgsp1_rep	CDS	9878501	9878740	.	+	0	Parent=Os02t0272200-00
Chr02	irgsp1_rep	CDS	9878853	9878975	.	+	0	Parent=Os02t0272200-00
Chr02	irgsp1_rep	CDS	9879097	9879276	.	+	0	Parent=Os02t0272200-00
Chr02	irgsp1_rep	three_prime_UTR	9879277	9879302	.	+	.	Parent=Os02t0272200-00
Chr02	irgsp1_rep	mRNA	9885649	9888391	.	+	.	ID=Os02t0272300-01;Name=Os02t0272300-01;Locus_id=Os02g0272300;RAP-DB Gene Symbol Synonym(s)=OsRopGEF3;RAP-DB Gene Name Synonym(s)=Guanine nucleotide exchange factor for ROP 3;CGSNL Gene Symbol=ROPGEF3;CGSNL Gene Name=ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 3;Oryzabase Gene Symbol Synonym(s)=Os RopGEF3%2C OsRopGEF3%2C RopGEF3;Oryzabase Gene Name Synonym(s)=GEF for ROP 3%2C guanine nucleotide exchange factor for Rop 3%2C Rop-specific GEF3%2C Rop-specific guanine nucleotide exchange factor 3;Note=Guanine nucleotide exchange factor for Rho-type GTPase of plant (ROP/Rac)%2C Pollen germination%2C Pollen tube growth;Transcript_evidence=AK072271;ORF_evidence=Q6EST6;GO=Molecular Function: Rho guanyl-nucleotide exchange factor activity (GO:0005089);InterPro=PRONE domain (IPR005512);NIAS_FLcDNA=J023008O15;Manual Curation=March 9%2C 2020;Literature_PMID=32131749;Oryzabase=11445;Expression=AK072271;TENOR=Os02t0272300-01;KEGG=Os02t0272300-01;Subcellular location=cytosol (GO:0005829), plasma membrane (GO:0005886)
Chr02	irgsp1_rep	five_prime_UTR	9885649	9886103	.	+	.	Parent=Os02t0272300-01
Chr02	irgsp1_rep	CDS	9886104	9886317	.	+	0	Parent=Os02t0272300-01
Chr02	irgsp1_rep	CDS	9886417	9886763	.	+	2	Parent=Os02t0272300-01
Chr02	irgsp1_rep	CDS	9886843	9887418	.	+	0	Parent=Os02t0272300-01
Chr02	irgsp1_rep	CDS	9887501	9887905	.	+	0	Parent=Os02t0272300-01
Chr02	irgsp1_rep	three_prime_UTR	9887906	9888391	.	+	.	Parent=Os02t0272300-01
Chr02	irgsp1_rep	mRNA	9888494	9892534	.	+	.	ID=Os02t0272350-01;Name=Os02t0272350-01;Locus_id=Os02g0272350;Note=Hypothetical gene.;Transcript_evidence=AK288768 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090067K03;TENOR=Os02t0272350-01;KEGG=Os02t0272350-01
Chr02	irgsp1_rep	five_prime_UTR	9888494	9888637	.	+	.	Parent=Os02t0272350-01
Chr02	irgsp1_rep	CDS	9888638	9888925	.	+	0	Parent=Os02t0272350-01
Chr02	irgsp1_rep	three_prime_UTR	9888926	9892534	.	+	.	Parent=Os02t0272350-01
Chr02	irgsp1_rep	mRNA	9888890	9893654	.	-	.	ID=Os02t0272400-00;Name=Os02t0272400-00;Locus_id=Os02g0272400;Note=Similar to predicted protein.;Transcript_evidence=EU972006 (DDBJ);ORF_evidence=Q6EST5 (UniProt);TENOR=Os02t0272400-00;KEGG=Os02t0272400-00
Chr02	irgsp1_rep	five_prime_UTR	9893503	9893654	.	-	.	Parent=Os02t0272400-00
Chr02	irgsp1_rep	CDS	9893109	9893502	.	-	0	Parent=Os02t0272400-00
Chr02	irgsp1_rep	CDS	9891070	9891150	.	-	2	Parent=Os02t0272400-00
Chr02	irgsp1_rep	CDS	9889069	9889505	.	-	2	Parent=Os02t0272400-00
Chr02	irgsp1_rep	three_prime_UTR	9888890	9889068	.	-	.	Parent=Os02t0272400-00
Chr02	irgsp1_rep	mRNA	9902631	9907870	.	+	.	ID=Os02t0272600-01;Name=Os02t0272600-01;Locus_id=Os02g0272600;Note=Aph-1 family protein.;Transcript_evidence=AK060159 (DDBJ%2C Best hit),AK104758 (DDBJ%2C Best hit);ORF_evidence=B4FUF4 (UniProt);GO=Biological Process: protein processing (GO:0016485),Biological Process: positive regulation of catalytic activity (GO:0043085),Cellular Component: integral to membrane (GO:0016021);InterPro=Aph-1 (IPR009294);NIAS_FLcDNA=006-310-G12,001-038-G08;Expression=AK060159;TENOR=Os02t0272600-01;KEGG=Os02t0272600-01
Chr02	irgsp1_rep	five_prime_UTR	9902631	9902793	.	+	.	Parent=Os02t0272600-01
Chr02	irgsp1_rep	CDS	9902794	9902906	.	+	0	Parent=Os02t0272600-01
Chr02	irgsp1_rep	CDS	9904379	9904534	.	+	1	Parent=Os02t0272600-01
Chr02	irgsp1_rep	CDS	9904679	9904764	.	+	1	Parent=Os02t0272600-01
Chr02	irgsp1_rep	CDS	9906084	9906209	.	+	2	Parent=Os02t0272600-01
Chr02	irgsp1_rep	CDS	9906448	9906575	.	+	2	Parent=Os02t0272600-01
Chr02	irgsp1_rep	CDS	9907536	9907676	.	+	0	Parent=Os02t0272600-01
Chr02	irgsp1_rep	three_prime_UTR	9907677	9907870	.	+	.	Parent=Os02t0272600-01
Chr02	irgsp1_rep	mRNA	9902631	9907851	.	+	.	ID=Os02t0272600-02;Name=Os02t0272600-02;Locus_id=Os02g0272600;Note=Similar to gamma-secretase subunit APH-1B.;Transcript_evidence=AK064930 (DDBJ%2C Best hit);ORF_evidence=NP_001149690.1 (RefSeq);GO=Biological Process: protein processing (GO:0016485),Biological Process: positive regulation of catalytic activity (GO:0043085),Cellular Component: integral to membrane (GO:0016021);InterPro=Aph-1 (IPR009294);NIAS_FLcDNA=J013000O04;Expression=AK064930;TENOR=Os02t0272600-02;KEGG=Os02t0272600-02
Chr02	irgsp1_rep	five_prime_UTR	9902631	9902793	.	+	.	Parent=Os02t0272600-02
Chr02	irgsp1_rep	CDS	9902794	9902906	.	+	0	Parent=Os02t0272600-02
Chr02	irgsp1_rep	CDS	9904379	9904538	.	+	1	Parent=Os02t0272600-02
Chr02	irgsp1_rep	three_prime_UTR	9904679	9906209	.	+	.	Parent=Os02t0272600-02
Chr02	irgsp1_rep	three_prime_UTR	9906448	9906575	.	+	.	Parent=Os02t0272600-02
Chr02	irgsp1_rep	three_prime_UTR	9907536	9907851	.	+	.	Parent=Os02t0272600-02
Chr02	irgsp1_rep	mRNA	9912537	9919784	.	-	.	ID=Os02t0272800-01;Name=Os02t0272800-01;Locus_id=Os02g0272800;Note=Conserved hypothetical protein.;Transcript_evidence=AK111345 (DDBJ%2C Best hit);ORF_evidence=Q6AUX9 (UniProt);NIAS_FLcDNA=002-181-G01;Expression=AK111345;TENOR=Os02t0272800-01;KEGG=Os02t0272800-01
Chr02	irgsp1_rep	five_prime_UTR	9919565	9919784	.	-	.	Parent=Os02t0272800-01
Chr02	irgsp1_rep	CDS	9919144	9919564	.	-	0	Parent=Os02t0272800-01
Chr02	irgsp1_rep	CDS	9912965	9913002	.	-	2	Parent=Os02t0272800-01
Chr02	irgsp1_rep	CDS	9912706	9912888	.	-	0	Parent=Os02t0272800-01
Chr02	irgsp1_rep	three_prime_UTR	9912537	9912705	.	-	.	Parent=Os02t0272800-01
Chr02	irgsp1_rep	mRNA	9913947	9914430	.	+	.	ID=Os02t0272850-00;Name=Os02t0272850-00;Locus_id=Os02g0272850;Note=Conserved hypothetical protein.;Transcript_evidence=BT009181 (DDBJ);ORF_evidence=F2CQT8 (UniProt);TENOR=Os02t0272850-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	9913947	9913995	.	+	.	Parent=Os02t0272850-00
Chr02	irgsp1_rep	CDS	9913996	9914268	.	+	0	Parent=Os02t0272850-00
Chr02	irgsp1_rep	three_prime_UTR	9914269	9914430	.	+	.	Parent=Os02t0272850-00
Chr02	irgsp1_rep	mRNA	9923292	9928340	.	-	.	ID=Os02t0272900-01;Name=Os02t0272900-01;Locus_id=Os02g0272900;Note=NB-ARC domain containing protein.;Transcript_evidence=AK101376 (DDBJ%2C Best hit);ORF_evidence=Q6EST1 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J033036C01;Expression=AK101376;TENOR=Os02t0272900-01;KEGG=Os02t0272900-01
Chr02	irgsp1_rep	five_prime_UTR	9928191	9928340	.	-	.	Parent=Os02t0272900-01
Chr02	irgsp1_rep	CDS	9927382	9928190	.	-	0	Parent=Os02t0272900-01
Chr02	irgsp1_rep	CDS	9923292	9924684	.	-	1	Parent=Os02t0272900-01
Chr02	irgsp1_rep	mRNA	9928936	9937374	.	-	.	ID=Os02t0273000-01;Name=Os02t0273000-01;Locus_id=Os02g0273000;Note=Similar to Uridine kinase-like protein.;Transcript_evidence=AK071021 (DDBJ%2C Best hit);ORF_evidence=D7UAT7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: nucleoside metabolic process (GO:0009116),Molecular Function: ATP binding (GO:0005524),Molecular Function: kinase activity (GO:0016301),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Uridine kinase (IPR000764),Phosphoribosyltransferase (IPR000836),Phosphoribulokinase/uridine kinase (IPR006083);NIAS_FLcDNA=J023080O08;Expression=AK071021;TENOR=Os02t0273000-01;KEGG=Os02t0273000-01
Chr02	irgsp1_rep	five_prime_UTR	9937139	9937374	.	-	.	Parent=Os02t0273000-01
Chr02	irgsp1_rep	five_prime_UTR	9936726	9936744	.	-	.	Parent=Os02t0273000-01
Chr02	irgsp1_rep	CDS	9936563	9936725	.	-	0	Parent=Os02t0273000-01
Chr02	irgsp1_rep	CDS	9936341	9936432	.	-	2	Parent=Os02t0273000-01
Chr02	irgsp1_rep	CDS	9935309	9935378	.	-	0	Parent=Os02t0273000-01
Chr02	irgsp1_rep	CDS	9935100	9935215	.	-	2	Parent=Os02t0273000-01
Chr02	irgsp1_rep	CDS	9933497	9933593	.	-	0	Parent=Os02t0273000-01
Chr02	irgsp1_rep	CDS	9932428	9932507	.	-	2	Parent=Os02t0273000-01
Chr02	irgsp1_rep	CDS	9932098	9932292	.	-	0	Parent=Os02t0273000-01
Chr02	irgsp1_rep	CDS	9931865	9931948	.	-	0	Parent=Os02t0273000-01
Chr02	irgsp1_rep	CDS	9931726	9931786	.	-	0	Parent=Os02t0273000-01
Chr02	irgsp1_rep	CDS	9931002	9931062	.	-	2	Parent=Os02t0273000-01
Chr02	irgsp1_rep	CDS	9930490	9930583	.	-	1	Parent=Os02t0273000-01
Chr02	irgsp1_rep	CDS	9930346	9930418	.	-	0	Parent=Os02t0273000-01
Chr02	irgsp1_rep	CDS	9929946	9930028	.	-	2	Parent=Os02t0273000-01
Chr02	irgsp1_rep	CDS	9929287	9929477	.	-	0	Parent=Os02t0273000-01
Chr02	irgsp1_rep	CDS	9929174	9929183	.	-	1	Parent=Os02t0273000-01
Chr02	irgsp1_rep	three_prime_UTR	9928936	9929173	.	-	.	Parent=Os02t0273000-01
Chr02	irgsp1_rep	mRNA	9929008	9936733	.	+	.	ID=Os02t0273050-00;Name=Os02t0273050-00;Locus_id=Os02g0273050;Note=Non-protein coding transcript.;Transcript_evidence=tplb0046c01 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os02t0273050-00
Chr02	irgsp1_rep	exon	9929008	9929182	.	+	.	Parent=Os02t0273050-00
Chr02	irgsp1_rep	exon	9929286	9929476	.	+	.	Parent=Os02t0273050-00
Chr02	irgsp1_rep	exon	9929945	9930031	.	+	.	Parent=Os02t0273050-00
Chr02	irgsp1_rep	exon	9930356	9930406	.	+	.	Parent=Os02t0273050-00
Chr02	irgsp1_rep	exon	9930478	9930615	.	+	.	Parent=Os02t0273050-00
Chr02	irgsp1_rep	exon	9931694	9931784	.	+	.	Parent=Os02t0273050-00
Chr02	irgsp1_rep	exon	9931863	9931944	.	+	.	Parent=Os02t0273050-00
Chr02	irgsp1_rep	exon	9932095	9932305	.	+	.	Parent=Os02t0273050-00
Chr02	irgsp1_rep	exon	9932442	9932507	.	+	.	Parent=Os02t0273050-00
Chr02	irgsp1_rep	exon	9933497	9933590	.	+	.	Parent=Os02t0273050-00
Chr02	irgsp1_rep	exon	9935097	9935202	.	+	.	Parent=Os02t0273050-00
Chr02	irgsp1_rep	exon	9935294	9935377	.	+	.	Parent=Os02t0273050-00
Chr02	irgsp1_rep	exon	9936340	9936430	.	+	.	Parent=Os02t0273050-00
Chr02	irgsp1_rep	exon	9936561	9936733	.	+	.	Parent=Os02t0273050-00
Chr02	irgsp1_rep	mRNA	9950654	9954960	.	-	.	ID=Os02t0273100-01;Name=Os02t0273100-01;Locus_id=Os02g0273100;Note=Aminotransferase%2C class IV family protein.;Transcript_evidence=AK061985 (DDBJ%2C Best hit);ORF_evidence=Q5DQ95 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Aminotransferase%2C class IV (IPR001544);NIAS_FLcDNA=001-043-B05;Expression=AK061985;TENOR=Os02t0273100-01;KEGG=Os02t0273100-01
Chr02	irgsp1_rep	five_prime_UTR	9954888	9954960	.	-	.	Parent=Os02t0273100-01
Chr02	irgsp1_rep	CDS	9954722	9954887	.	-	0	Parent=Os02t0273100-01
Chr02	irgsp1_rep	CDS	9953480	9953535	.	-	2	Parent=Os02t0273100-01
Chr02	irgsp1_rep	CDS	9952304	9952482	.	-	0	Parent=Os02t0273100-01
Chr02	irgsp1_rep	CDS	9951432	9952105	.	-	1	Parent=Os02t0273100-01
Chr02	irgsp1_rep	CDS	9951188	9951282	.	-	2	Parent=Os02t0273100-01
Chr02	irgsp1_rep	three_prime_UTR	9950654	9951187	.	-	.	Parent=Os02t0273100-01
Chr02	irgsp1_rep	mRNA	9950719	9954926	.	-	.	ID=Os02t0273100-02;Name=Os02t0273100-02;Locus_id=Os02g0273100;Note=Aminotransferase%2C class IV family protein.;Transcript_evidence=AK099165 (DDBJ%2C Best hit);ORF_evidence=Q5DQ95 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Aminotransferase%2C class IV (IPR001544);NIAS_FLcDNA=J023080D02;Expression=AK099165;TENOR=Os02t0273100-02;KEGG=Os02t0273100-02
Chr02	irgsp1_rep	five_prime_UTR	9954888	9954926	.	-	.	Parent=Os02t0273100-02
Chr02	irgsp1_rep	CDS	9954722	9954887	.	-	0	Parent=Os02t0273100-02
Chr02	irgsp1_rep	CDS	9953480	9953535	.	-	2	Parent=Os02t0273100-02
Chr02	irgsp1_rep	CDS	9952304	9952482	.	-	0	Parent=Os02t0273100-02
Chr02	irgsp1_rep	CDS	9951432	9952105	.	-	1	Parent=Os02t0273100-02
Chr02	irgsp1_rep	CDS	9951188	9951282	.	-	2	Parent=Os02t0273100-02
Chr02	irgsp1_rep	three_prime_UTR	9950719	9951187	.	-	.	Parent=Os02t0273100-02
Chr02	irgsp1_rep	mRNA	9973072	9976395	.	-	.	ID=Os02t0273501-00;Name=Os02t0273501-00;Locus_id=Os02g0273501;Note=Non-protein coding transcript.;Transcript_evidence=BT083949 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0273501-00
Chr02	irgsp1_rep	exon	9976234	9976395	.	-	.	Parent=Os02t0273501-00
Chr02	irgsp1_rep	exon	9975819	9976051	.	-	.	Parent=Os02t0273501-00
Chr02	irgsp1_rep	exon	9975585	9975680	.	-	.	Parent=Os02t0273501-00
Chr02	irgsp1_rep	exon	9975428	9975472	.	-	.	Parent=Os02t0273501-00
Chr02	irgsp1_rep	exon	9975120	9975300	.	-	.	Parent=Os02t0273501-00
Chr02	irgsp1_rep	exon	9974748	9974857	.	-	.	Parent=Os02t0273501-00
Chr02	irgsp1_rep	exon	9974540	9974655	.	-	.	Parent=Os02t0273501-00
Chr02	irgsp1_rep	exon	9973808	9973890	.	-	.	Parent=Os02t0273501-00
Chr02	irgsp1_rep	exon	9973072	9973142	.	-	.	Parent=Os02t0273501-00
Chr02	irgsp1_rep	mRNA	9972735	9978051	.	+	.	ID=Os02t0273700-01;Name=Os02t0273700-01;Locus_id=Os02g0273700;Note=VHS domain containing protein.;Transcript_evidence=AK102828 (DDBJ%2C Best hit);ORF_evidence=NP_001147567.1 (RefSeq);GO=Biological Process: intracellular protein transport (GO:0006886),Cellular Component: intracellular (GO:0005622);InterPro=VHS (IPR002014),GAT (IPR004152),ENTH/VHS (IPR008942),VHS subgroup (IPR018205);NIAS_FLcDNA=J033109D12;Expression=AK102828;TENOR=Os02t0273700-01;KEGG=Os02t0273700-01
Chr02	irgsp1_rep	five_prime_UTR	9972735	9972875	.	+	.	Parent=Os02t0273700-01
Chr02	irgsp1_rep	five_prime_UTR	9972995	9973058	.	+	.	Parent=Os02t0273700-01
Chr02	irgsp1_rep	CDS	9973059	9973159	.	+	0	Parent=Os02t0273700-01
Chr02	irgsp1_rep	CDS	9973827	9973905	.	+	1	Parent=Os02t0273700-01
Chr02	irgsp1_rep	CDS	9974559	9974657	.	+	0	Parent=Os02t0273700-01
Chr02	irgsp1_rep	CDS	9974750	9974863	.	+	0	Parent=Os02t0273700-01
Chr02	irgsp1_rep	CDS	9975127	9975278	.	+	0	Parent=Os02t0273700-01
Chr02	irgsp1_rep	CDS	9975405	9975486	.	+	1	Parent=Os02t0273700-01
Chr02	irgsp1_rep	CDS	9975598	9975683	.	+	0	Parent=Os02t0273700-01
Chr02	irgsp1_rep	CDS	9975821	9976000	.	+	1	Parent=Os02t0273700-01
Chr02	irgsp1_rep	CDS	9976222	9976619	.	+	1	Parent=Os02t0273700-01
Chr02	irgsp1_rep	CDS	9977094	9977707	.	+	2	Parent=Os02t0273700-01
Chr02	irgsp1_rep	three_prime_UTR	9977708	9978051	.	+	.	Parent=Os02t0273700-01
Chr02	irgsp1_rep	mRNA	9981667	9985906	.	-	.	ID=Os02t0273800-01;Name=Os02t0273800-01;Locus_id=Os02g0273800;Note=Multi antimicrobial extrusion protein MatE domain containing protein.;Transcript_evidence=AK068740 (DDBJ%2C Best hit);ORF_evidence=F1SZ39 (UniProt);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528),Pentatricopeptide repeat (IPR002885),Ribonuclease Zc3h12a-like (IPR021869);NIAS_FLcDNA=J013166C04;Expression=AK068740;TENOR=Os02t0273800-01;KEGG=Os02t0273800-01
Chr02	irgsp1_rep	five_prime_UTR	9985824	9985906	.	-	.	Parent=Os02t0273800-01
Chr02	irgsp1_rep	CDS	9984222	9985823	.	-	0	Parent=Os02t0273800-01
Chr02	irgsp1_rep	CDS	9983610	9983699	.	-	0	Parent=Os02t0273800-01
Chr02	irgsp1_rep	CDS	9983343	9983524	.	-	0	Parent=Os02t0273800-01
Chr02	irgsp1_rep	CDS	9982937	9983057	.	-	1	Parent=Os02t0273800-01
Chr02	irgsp1_rep	CDS	9982618	9982686	.	-	0	Parent=Os02t0273800-01
Chr02	irgsp1_rep	CDS	9982247	9982342	.	-	0	Parent=Os02t0273800-01
Chr02	irgsp1_rep	three_prime_UTR	9982135	9982246	.	-	.	Parent=Os02t0273800-01
Chr02	irgsp1_rep	three_prime_UTR	9981667	9981872	.	-	.	Parent=Os02t0273800-01
Chr02	irgsp1_rep	mRNA	9981587	9985833	.	-	.	ID=Os02t0273800-02;Name=Os02t0273800-02;Locus_id=Os02g0273800;Note=Multi antimicrobial extrusion protein MatE domain containing protein.;Transcript_evidence=AK099937 (DDBJ%2C Best hit);ORF_evidence=F1SZ39 (UniProt);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528),Pentatricopeptide repeat (IPR002885),Ribonuclease Zc3h12a-like (IPR021869);NIAS_FLcDNA=J013119L05;Expression=AK099937;TENOR=Os02t0273800-02;KEGG=Os02t0273800-02
Chr02	irgsp1_rep	five_prime_UTR	9985824	9985833	.	-	.	Parent=Os02t0273800-02
Chr02	irgsp1_rep	CDS	9984222	9985823	.	-	0	Parent=Os02t0273800-02
Chr02	irgsp1_rep	CDS	9983610	9983699	.	-	0	Parent=Os02t0273800-02
Chr02	irgsp1_rep	CDS	9983343	9983524	.	-	0	Parent=Os02t0273800-02
Chr02	irgsp1_rep	CDS	9982937	9983057	.	-	1	Parent=Os02t0273800-02
Chr02	irgsp1_rep	CDS	9982618	9982686	.	-	0	Parent=Os02t0273800-02
Chr02	irgsp1_rep	CDS	9982247	9982342	.	-	0	Parent=Os02t0273800-02
Chr02	irgsp1_rep	three_prime_UTR	9982135	9982246	.	-	.	Parent=Os02t0273800-02
Chr02	irgsp1_rep	three_prime_UTR	9981587	9981872	.	-	.	Parent=Os02t0273800-02
Chr02	irgsp1_rep	mRNA	9981536	9982197	.	-	.	ID=Os02t0273800-03;Name=Os02t0273800-03;Locus_id=Os02g0273800;Note=Non-protein coding transcript.;Transcript_evidence=AK071312 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023086M18;TENOR=Os02t0273800-03
Chr02	irgsp1_rep	exon	9982135	9982197	.	-	.	Parent=Os02t0273800-03
Chr02	irgsp1_rep	exon	9981536	9981872	.	-	.	Parent=Os02t0273800-03
Chr02	irgsp1_rep	mRNA	9988906	9990643	.	-	.	ID=Os02t0273900-01;Name=Os02t0273900-01;Locus_id=Os02g0273900;Note=Conserved hypothetical protein.;Transcript_evidence=AK111035 (DDBJ%2C Best hit);ORF_evidence=B8AFN6 (UniProt);NIAS_FLcDNA=002-175-A06;Expression=AK111035;TENOR=Os02t0273900-01;KEGG=Os02t0273900-01
Chr02	irgsp1_rep	five_prime_UTR	9990607	9990643	.	-	.	Parent=Os02t0273900-01
Chr02	irgsp1_rep	CDS	9990494	9990606	.	-	0	Parent=Os02t0273900-01
Chr02	irgsp1_rep	CDS	9990276	9990394	.	-	1	Parent=Os02t0273900-01
Chr02	irgsp1_rep	CDS	9989105	9989124	.	-	2	Parent=Os02t0273900-01
Chr02	irgsp1_rep	three_prime_UTR	9988906	9989104	.	-	.	Parent=Os02t0273900-01
Chr02	irgsp1_rep	mRNA	9994013	9998203	.	+	.	ID=Os02t0274000-01;Name=Os02t0274000-01;Locus_id=Os02g0274000;CGSNL Gene Symbol=RF2;CGSNL Gene Name=RESTORATION OF FERTILITY 2;Oryzabase Gene Symbol Synonym(s)=Rf2 (Rfx)%2C Rfx%2C Rf2;Oryzabase Gene Name Synonym(s)=Pollen fertility restoration2%2C Pollen fertility restoration 2%2C Pollen fertility restoration-2;Note=Similar to Rf2 protein.;Transcript_evidence=AK099750 (DDBJ%2C Best hit);ORF_evidence=F1SZ44 (UniProt);NIAS_FLcDNA=J013092A18;Oryzabase=509;Expression=AK099750;TENOR=Os02t0274000-01;KEGG=Os02t0274000-01
Chr02	irgsp1_rep	five_prime_UTR	9994013	9994232	.	+	.	Parent=Os02t0274000-01
Chr02	irgsp1_rep	five_prime_UTR	9995125	9995212	.	+	.	Parent=Os02t0274000-01
Chr02	irgsp1_rep	five_prime_UTR	9996013	9997558	.	+	.	Parent=Os02t0274000-01
Chr02	irgsp1_rep	CDS	9997559	9997646	.	+	0	Parent=Os02t0274000-01
Chr02	irgsp1_rep	CDS	9997731	9997963	.	+	2	Parent=Os02t0274000-01
Chr02	irgsp1_rep	three_prime_UTR	9997964	9998203	.	+	.	Parent=Os02t0274000-01
Chr02	irgsp1_rep	mRNA	9996799	9998203	.	+	.	ID=Os02t0274000-02;Name=Os02t0274000-02;Locus_id=Os02g0274000;CGSNL Gene Symbol=RF2;CGSNL Gene Name=RESTORATION OF FERTILITY 2;Oryzabase Gene Symbol Synonym(s)=Rf2 (Rfx)%2C Rfx%2C Rf2;Oryzabase Gene Name Synonym(s)=Pollen fertility restoration2%2C Pollen fertility restoration 2%2C Pollen fertility restoration-2;Note=Similar to Rf2 protein.;Transcript_evidence=AK061802 (DDBJ%2C Best hit);ORF_evidence=F1SZ44 (UniProt);NIAS_FLcDNA=001-039-H11;Oryzabase=509;Expression=AK061802;TENOR=Os02t0274000-02;KEGG=Os02t0274000-02
Chr02	irgsp1_rep	five_prime_UTR	9996799	9997558	.	+	.	Parent=Os02t0274000-02
Chr02	irgsp1_rep	CDS	9997559	9997646	.	+	0	Parent=Os02t0274000-02
Chr02	irgsp1_rep	CDS	9997731	9997963	.	+	2	Parent=Os02t0274000-02
Chr02	irgsp1_rep	three_prime_UTR	9997964	9998203	.	+	.	Parent=Os02t0274000-02
Chr02	irgsp1_rep	mRNA	9993963	9998257	.	+	.	ID=Os02t0274000-03;Name=Os02t0274000-03;Locus_id=Os02g0274000;RAP-DB Gene Symbol Synonym(s)=RF2%2C Rf2 (Rfx)%2C Rfx%2C Rf2;RAP-DB Gene Name Synonym(s)=RESTORATION OF FERTILITY 2%2C Pollen fertility restoration2%2C Pollen fertility restoration 2%2C Pollen fertility restoration-2;CGSNL Gene Symbol=RF2;CGSNL Gene Name=RESTORATION OF FERTILITY 2;Oryzabase Gene Symbol Synonym(s)=Rf2 (Rfx)%2C Rfx%2C Rf2;Oryzabase Gene Name Synonym(s)=Pollen fertility restoration2%2C Pollen fertility restoration 2%2C Pollen fertility restoration-2;Note=Mitochondrial glycine-rich protein%2C Fertility restoration in LD-CMS;Transcript_evidence=AB583698 (Fukuyama),AB583699 (Owarihatamochi),AB583700 (Taichung 65);ORF_evidence=F1SZ42,F1SZ44;Manual Curation=April 15%2C 2011;Literature_PMID=21265890;Oryzabase=509
Chr02	irgsp1_rep	five_prime_UTR	9993963	9994232	.	+	.	Parent=Os02t0274000-03
Chr02	irgsp1_rep	five_prime_UTR	9995125	9995142	.	+	.	Parent=Os02t0274000-03
Chr02	irgsp1_rep	CDS	9995143	9995212	.	+	0	Parent=Os02t0274000-03
Chr02	irgsp1_rep	CDS	9996013	9996086	.	+	2	Parent=Os02t0274000-03
Chr02	irgsp1_rep	CDS	9997565	9997646	.	+	0	Parent=Os02t0274000-03
Chr02	irgsp1_rep	CDS	9997731	9997963	.	+	2	Parent=Os02t0274000-03
Chr02	irgsp1_rep	three_prime_UTR	9997964	9998257	.	+	.	Parent=Os02t0274000-03
Chr02	irgsp1_rep	mRNA	10001543	10010228	.	+	.	ID=Os02t0274100-01;Name=Os02t0274100-01;Locus_id=Os02g0274100;RAP-DB Gene Symbol Synonym(s)=AIM1%2C MFP;RAP-DB Gene Name Synonym(s)=ABNORMAL INFLORESCENCE MERISTEM1%2C multifunctional protein%2C peroxisomal multifunctional protein;CGSNL Gene Symbol=AIM1;CGSNL Gene Name=ABNORMAL INFLORESCENCE MERISTEM1;Oryzabase Gene Symbol Synonym(s)=MFP%2C OsAIM%2C OsCHD%2C CHD;Oryzabase Gene Name Synonym(s)=multifunctional protein%2C peroxisomal multifunctional protein%2C ABNORMAL INFLORESCENCE MERISTEM 1%2C cinnamoyl-CoA hydratase-dehydrogenase;Note=3-hydroxyacyl-CoA dehydrogenase%2C Multifunctional protein%2C  RNA- and microtubule-binding protein%2C Salicylic acid (SA) biosynthesis%2C Maintenance of root meristem activity%2C Beta -oxidation of fatty acids;Transcript_evidence=AK073294;ORF_evidence=Q8W1L6;GO=Biological Process: fatty acid metabolic process (GO:0006631),Biological Process: fatty acid beta-oxidation (GO:0006635),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: 3-hydroxyacyl-CoA dehydrogenase activity (GO:0003857),Molecular Function: oxidoreductase activity (GO:0016491),Cellular Component: peroxisome (GO:0005777);InterPro=Crotonase superfamily (IPR001753),Peroxisomal fatty acid beta-oxidation multifunctional protein AIM1 (IPR033346),ClpP/crotonase-like domain (IPR029045),NAD(P)-binding domain (IPR016040),3-hydroxyacyl-CoA dehydrogenase%2C NAD binding (IPR006176),3-hydroxyacyl-CoA dehydrogenase%2C C-terminal (IPR006108),6-phosphogluconate dehydrogenase C-terminal domain-like (IPR008927),6-phosphogluconate dehydrogenase%2C domain 2 (IPR013328),Enoyl-CoA hydratase/isomerase%2C conserved site (IPR018376),3-hydroxyacyl-CoA dehydrogenase%2C conserved site (IPR006180);NIAS_FLcDNA=J033025B12;Manual Curation=April 18%2C 2017;Literature_PMID=28298519,11706039;Oryzabase=13872;Expression=AK073294;TENOR=Os02t0274100-01;KEGG=Os02t0274100-01 (EC:1.1.1.211, EC:1.1.1.35, EC:4.2.1.17)
Chr02	irgsp1_rep	five_prime_UTR	10001543	10001645	.	+	.	Parent=Os02t0274100-01
Chr02	irgsp1_rep	CDS	10001646	10001742	.	+	0	Parent=Os02t0274100-01
Chr02	irgsp1_rep	CDS	10001854	10001925	.	+	2	Parent=Os02t0274100-01
Chr02	irgsp1_rep	CDS	10002688	10002750	.	+	2	Parent=Os02t0274100-01
Chr02	irgsp1_rep	CDS	10002854	10002910	.	+	2	Parent=Os02t0274100-01
Chr02	irgsp1_rep	CDS	10003061	10003128	.	+	2	Parent=Os02t0274100-01
Chr02	irgsp1_rep	CDS	10003229	10003310	.	+	0	Parent=Os02t0274100-01
Chr02	irgsp1_rep	CDS	10003419	10003474	.	+	2	Parent=Os02t0274100-01
Chr02	irgsp1_rep	CDS	10003836	10004138	.	+	0	Parent=Os02t0274100-01
Chr02	irgsp1_rep	CDS	10004540	10004626	.	+	0	Parent=Os02t0274100-01
Chr02	irgsp1_rep	CDS	10005356	10005530	.	+	0	Parent=Os02t0274100-01
Chr02	irgsp1_rep	CDS	10005715	10005836	.	+	2	Parent=Os02t0274100-01
Chr02	irgsp1_rep	CDS	10006073	10006236	.	+	0	Parent=Os02t0274100-01
Chr02	irgsp1_rep	CDS	10007103	10007357	.	+	1	Parent=Os02t0274100-01
Chr02	irgsp1_rep	CDS	10007881	10008002	.	+	1	Parent=Os02t0274100-01
Chr02	irgsp1_rep	CDS	10008122	10008243	.	+	2	Parent=Os02t0274100-01
Chr02	irgsp1_rep	CDS	10008354	10008502	.	+	0	Parent=Os02t0274100-01
Chr02	irgsp1_rep	CDS	10009083	10009221	.	+	1	Parent=Os02t0274100-01
Chr02	irgsp1_rep	CDS	10009673	10009720	.	+	0	Parent=Os02t0274100-01
Chr02	irgsp1_rep	three_prime_UTR	10009721	10010228	.	+	.	Parent=Os02t0274100-01
Chr02	irgsp1_rep	mRNA	10006098	10010005	.	+	.	ID=Os02t0274100-02;Name=Os02t0274100-02;Locus_id=Os02g0274100;CGSNL Gene Symbol=AIM1;CGSNL Gene Name=ABNORMAL INFLORESCENCE MERISTEM1;Oryzabase Gene Symbol Synonym(s)=MFP%2C OsAIM%2C OsCHD%2C CHD;Oryzabase Gene Name Synonym(s)=multifunctional protein%2C peroxisomal multifunctional protein%2C ABNORMAL INFLORESCENCE MERISTEM 1%2C cinnamoyl-CoA hydratase-dehydrogenase;Note=Similar to Peroxisomal fatty acid beta-oxidation multifunctional protein.;Transcript_evidence=AK061665 (DDBJ%2C Best hit);ORF_evidence=Q8W1L6 (UniProt);GO=Biological Process: fatty acid metabolic process (GO:0006631),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: 3-hydroxyacyl-CoA dehydrogenase activity (GO:0003857),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: coenzyme binding (GO:0050662);InterPro=3-hydroxyacyl-CoA dehydrogenase%2C C-terminal (IPR006108),3-hydroxyacyl-CoA dehydrogenase%2C NAD binding (IPR006176),3-hydroxyacyl-CoA dehydrogenase%2C conserved site (IPR006180),6-phosphogluconate dehydrogenase%2C C-terminal-like (IPR008927),Dehydrogenase%2C multihelical (IPR013328),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-036-F01;Oryzabase=13872;Expression=AK061665;TENOR=Os02t0274100-02;KEGG=Os02t0274100-02 (EC:1.1.1.211%2C EC:1.1.1.35%2C EC:4.2.1.17)
Chr02	irgsp1_rep	five_prime_UTR	10006098	10006099	.	+	.	Parent=Os02t0274100-02
Chr02	irgsp1_rep	CDS	10006100	10006236	.	+	0	Parent=Os02t0274100-02
Chr02	irgsp1_rep	CDS	10007103	10007357	.	+	1	Parent=Os02t0274100-02
Chr02	irgsp1_rep	CDS	10007881	10008002	.	+	1	Parent=Os02t0274100-02
Chr02	irgsp1_rep	CDS	10008122	10008243	.	+	2	Parent=Os02t0274100-02
Chr02	irgsp1_rep	CDS	10008354	10008502	.	+	0	Parent=Os02t0274100-02
Chr02	irgsp1_rep	CDS	10009083	10009221	.	+	1	Parent=Os02t0274100-02
Chr02	irgsp1_rep	CDS	10009673	10009720	.	+	0	Parent=Os02t0274100-02
Chr02	irgsp1_rep	three_prime_UTR	10009721	10010005	.	+	.	Parent=Os02t0274100-02
Chr02	irgsp1_rep	mRNA	10010654	10011169	.	+	.	ID=Os02t0274350-00;Name=Os02t0274350-00;Locus_id=Os02g0274350;Note=Non-protein coding transcript.;Transcript_evidence=AM939974 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0274350-00
Chr02	irgsp1_rep	exon	10010654	10011169	.	+	.	Parent=Os02t0274350-00
Chr02	irgsp1_rep	mRNA	10042489	10047801	.	-	.	ID=Os02t0274600-00;Name=Os02t0274600-00;Locus_id=Os02g0274600;Note=Tesmin/TSO1-like%2C CXC domain containing protein.;Transcript_evidence=BT061708 (DDBJ);ORF_evidence=Q6K7T6 (UniProt);InterPro=Tesmin/TSO1-like%2C CXC (IPR005172);TENOR=Os02t0274600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	10047704	10047801	.	-	0	Parent=Os02t0274600-00
Chr02	irgsp1_rep	CDS	10046883	10047060	.	-	1	Parent=Os02t0274600-00
Chr02	irgsp1_rep	CDS	10045708	10046049	.	-	0	Parent=Os02t0274600-00
Chr02	irgsp1_rep	CDS	10045536	10045636	.	-	0	Parent=Os02t0274600-00
Chr02	irgsp1_rep	CDS	10045060	10045163	.	-	1	Parent=Os02t0274600-00
Chr02	irgsp1_rep	CDS	10043322	10043724	.	-	2	Parent=Os02t0274600-00
Chr02	irgsp1_rep	CDS	10042740	10042827	.	-	1	Parent=Os02t0274600-00
Chr02	irgsp1_rep	three_prime_UTR	10042489	10042739	.	-	.	Parent=Os02t0274600-00
Chr02	irgsp1_rep	mRNA	10054334	10056434	.	+	.	ID=Os02t0274700-01;Name=Os02t0274700-01;Locus_id=Os02g0274700;Note=Zinc finger%2C RanBP2-type domain containing protein.;Transcript_evidence=AK105691 (DDBJ%2C Best hit);ORF_evidence=B9F4Z1 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RanBP2-type (IPR001876);NIAS_FLcDNA=001-201-C05;TENOR=Os02t0274700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	10054334	10055057	.	+	.	Parent=Os02t0274700-01
Chr02	irgsp1_rep	CDS	10055058	10055353	.	+	0	Parent=Os02t0274700-01
Chr02	irgsp1_rep	CDS	10055454	10056189	.	+	1	Parent=Os02t0274700-01
Chr02	irgsp1_rep	three_prime_UTR	10056190	10056434	.	+	.	Parent=Os02t0274700-01
Chr02	irgsp1_rep	mRNA	10074588	10081478	.	+	.	ID=Os02t0274900-01;Name=Os02t0274900-01;Locus_id=Os02g0274900;Note=Major facilitator superfamily protein.;Transcript_evidence=AK060819 (DDBJ%2C Best hit);ORF_evidence=NP_001148943.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=001-034-A07;Expression=AK060819;TENOR=Os02t0274900-01;KEGG=Os02t0274900-01
Chr02	irgsp1_rep	five_prime_UTR	10074588	10074882	.	+	.	Parent=Os02t0274900-01
Chr02	irgsp1_rep	five_prime_UTR	10075103	10075107	.	+	.	Parent=Os02t0274900-01
Chr02	irgsp1_rep	CDS	10075108	10075189	.	+	0	Parent=Os02t0274900-01
Chr02	irgsp1_rep	CDS	10075291	10075371	.	+	2	Parent=Os02t0274900-01
Chr02	irgsp1_rep	CDS	10075524	10075553	.	+	2	Parent=Os02t0274900-01
Chr02	irgsp1_rep	CDS	10075629	10075761	.	+	2	Parent=Os02t0274900-01
Chr02	irgsp1_rep	CDS	10077011	10077110	.	+	1	Parent=Os02t0274900-01
Chr02	irgsp1_rep	CDS	10077214	10077326	.	+	0	Parent=Os02t0274900-01
Chr02	irgsp1_rep	CDS	10077413	10077506	.	+	1	Parent=Os02t0274900-01
Chr02	irgsp1_rep	CDS	10078203	10078356	.	+	0	Parent=Os02t0274900-01
Chr02	irgsp1_rep	CDS	10078465	10078608	.	+	2	Parent=Os02t0274900-01
Chr02	irgsp1_rep	CDS	10078704	10078777	.	+	2	Parent=Os02t0274900-01
Chr02	irgsp1_rep	CDS	10078851	10078939	.	+	0	Parent=Os02t0274900-01
Chr02	irgsp1_rep	CDS	10079713	10079827	.	+	1	Parent=Os02t0274900-01
Chr02	irgsp1_rep	CDS	10080583	10080765	.	+	0	Parent=Os02t0274900-01
Chr02	irgsp1_rep	three_prime_UTR	10080766	10080767	.	+	.	Parent=Os02t0274900-01
Chr02	irgsp1_rep	three_prime_UTR	10081026	10081478	.	+	.	Parent=Os02t0274900-01
Chr02	irgsp1_rep	mRNA	10074590	10081472	.	+	.	ID=Os02t0274900-02;Name=Os02t0274900-02;Locus_id=Os02g0274900;RAP-DB Gene Symbol Synonym(s)=OsGMST1;RAP-DB Gene Name Synonym(s)=Golgi localized monosaccharide transporter 1;Note=Monosaccharide transporter%2C Salt-stress tolerance;Transcript_evidence=AK073967;ORF_evidence=Q6K7S9;GO=Biological Process: transmembrane transport (GO:0055085),Molecular Function: transmembrane transporter activity (GO:0022857),Cellular Component: membrane (GO:0016020),Cellular Component: integral component of membrane (GO:0016021);InterPro=MFS transporter superfamily (IPR036259),Major facilitator%2C  sugar transporter-like (IPR005828),Sugar/inositol transporter (IPR003663),Major facilitator superfamily domain (IPR020846),Sugar transporter%2C conserved site (IPR005829);NIAS_FLcDNA=J033073C19;Manual Curation=September 7%2C 2020;Literature_PMID=21613379;Expression=AK073967;TENOR=Os02t0274900-02;Subcellular location=Golgi apparatus (GO:0005794)
Chr02	irgsp1_rep	five_prime_UTR	10074590	10074882	.	+	.	Parent=Os02t0274900-02
Chr02	irgsp1_rep	five_prime_UTR	10075103	10075107	.	+	.	Parent=Os02t0274900-02
Chr02	irgsp1_rep	CDS	10075108	10075189	.	+	0	Parent=Os02t0274900-02
Chr02	irgsp1_rep	CDS	10075291	10075387	.	+	2	Parent=Os02t0274900-02
Chr02	irgsp1_rep	CDS	10075486	10075553	.	+	1	Parent=Os02t0274900-02
Chr02	irgsp1_rep	CDS	10075629	10075761	.	+	2	Parent=Os02t0274900-02
Chr02	irgsp1_rep	CDS	10077011	10077110	.	+	1	Parent=Os02t0274900-02
Chr02	irgsp1_rep	CDS	10077214	10077326	.	+	0	Parent=Os02t0274900-02
Chr02	irgsp1_rep	CDS	10077413	10077506	.	+	1	Parent=Os02t0274900-02
Chr02	irgsp1_rep	CDS	10078203	10078356	.	+	0	Parent=Os02t0274900-02
Chr02	irgsp1_rep	CDS	10078465	10078608	.	+	2	Parent=Os02t0274900-02
Chr02	irgsp1_rep	CDS	10078704	10078777	.	+	2	Parent=Os02t0274900-02
Chr02	irgsp1_rep	CDS	10078851	10078939	.	+	0	Parent=Os02t0274900-02
Chr02	irgsp1_rep	CDS	10079713	10079827	.	+	1	Parent=Os02t0274900-02
Chr02	irgsp1_rep	CDS	10080583	10080765	.	+	0	Parent=Os02t0274900-02
Chr02	irgsp1_rep	three_prime_UTR	10080766	10080767	.	+	.	Parent=Os02t0274900-02
Chr02	irgsp1_rep	three_prime_UTR	10081026	10081472	.	+	.	Parent=Os02t0274900-02
Chr02	irgsp1_rep	mRNA	10077070	10081473	.	+	.	ID=Os02t0274900-03;Name=Os02t0274900-03;Locus_id=Os02g0274900;Note=Similar to metabolite transport protein csbC.;Transcript_evidence=AK073268 (DDBJ%2C Best hit);ORF_evidence=NP_001148943.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J033027O12;Expression=AK073268;TENOR=Os02t0274900-03;KEGG=Os02t0274900-03
Chr02	irgsp1_rep	five_prime_UTR	10077070	10077071	.	+	.	Parent=Os02t0274900-03
Chr02	irgsp1_rep	CDS	10077072	10077110	.	+	0	Parent=Os02t0274900-03
Chr02	irgsp1_rep	CDS	10077214	10077326	.	+	0	Parent=Os02t0274900-03
Chr02	irgsp1_rep	CDS	10077413	10077506	.	+	1	Parent=Os02t0274900-03
Chr02	irgsp1_rep	CDS	10078203	10078356	.	+	0	Parent=Os02t0274900-03
Chr02	irgsp1_rep	CDS	10078465	10078608	.	+	2	Parent=Os02t0274900-03
Chr02	irgsp1_rep	CDS	10078704	10078777	.	+	2	Parent=Os02t0274900-03
Chr02	irgsp1_rep	CDS	10078851	10078939	.	+	0	Parent=Os02t0274900-03
Chr02	irgsp1_rep	CDS	10079713	10079827	.	+	1	Parent=Os02t0274900-03
Chr02	irgsp1_rep	CDS	10080583	10080765	.	+	0	Parent=Os02t0274900-03
Chr02	irgsp1_rep	three_prime_UTR	10080766	10080767	.	+	.	Parent=Os02t0274900-03
Chr02	irgsp1_rep	three_prime_UTR	10081026	10081473	.	+	.	Parent=Os02t0274900-03
Chr02	irgsp1_rep	mRNA	10084510	10087894	.	+	.	ID=Os02t0275100-01;Name=Os02t0275100-01;Locus_id=Os02g0275100;Note=CytoChrome C biogenesis protein family protein.;Transcript_evidence=AK242385 (DDBJ%2C Best hit);ORF_evidence=B6SU73 (UniProt);InterPro=CytoChrome C biogenesis protein CcmH (IPR005616);NIAS_FLcDNA=J080047F12;TENOR=Os02t0275100-01;KEGG=Os02t0275100-01
Chr02	irgsp1_rep	five_prime_UTR	10084510	10084833	.	+	.	Parent=Os02t0275100-01
Chr02	irgsp1_rep	five_prime_UTR	10086261	10086311	.	+	.	Parent=Os02t0275100-01
Chr02	irgsp1_rep	CDS	10086312	10086452	.	+	0	Parent=Os02t0275100-01
Chr02	irgsp1_rep	CDS	10086611	10086742	.	+	0	Parent=Os02t0275100-01
Chr02	irgsp1_rep	CDS	10087357	10087542	.	+	0	Parent=Os02t0275100-01
Chr02	irgsp1_rep	three_prime_UTR	10087543	10087894	.	+	.	Parent=Os02t0275100-01
Chr02	irgsp1_rep	mRNA	10088244	10094968	.	-	.	ID=Os02t0275200-01;Name=Os02t0275200-01;Locus_id=Os02g0275200;Note=Xyloglucan fucosyltransferase family protein.;Transcript_evidence=AK071664 (DDBJ%2C Best hit);ORF_evidence=B8AFK6 (UniProt);GO=Biological Process: cell wall biogenesis (GO:0042546),Cellular Component: membrane (GO:0016020),Molecular Function: galactoside 2-alpha-L-fucosyltransferase activity (GO:0008107);InterPro=Xyloglucan fucosyltransferase (IPR004938);NIAS_FLcDNA=J023106B19;Expression=AK071664;TENOR=Os02t0275200-01;KEGG=Os02t0275200-01
Chr02	irgsp1_rep	five_prime_UTR	10094925	10094968	.	-	.	Parent=Os02t0275200-01
Chr02	irgsp1_rep	CDS	10094627	10094924	.	-	0	Parent=Os02t0275200-01
Chr02	irgsp1_rep	CDS	10088449	10089956	.	-	2	Parent=Os02t0275200-01
Chr02	irgsp1_rep	three_prime_UTR	10088244	10088448	.	-	.	Parent=Os02t0275200-01
Chr02	irgsp1_rep	mRNA	10088213	10089824	.	-	.	ID=Os02t0275200-02;Name=Os02t0275200-02;Locus_id=Os02g0275200;Note=Hypothetical conserved gene.;Transcript_evidence=AK060517 (DDBJ%2C Best hit);ORF_evidence=B8AFK6 (UniProt);GO=Biological Process: cell wall biogenesis (GO:0042546),Cellular Component: membrane (GO:0016020),Molecular Function: galactoside 2-alpha-L-fucosyltransferase activity (GO:0008107);InterPro=Xyloglucan fucosyltransferase (IPR004938);NIAS_FLcDNA=001-020-A08;Expression=AK060517;TENOR=Os02t0275200-02;KEGG=Os02t0275200-02
Chr02	irgsp1_rep	five_prime_UTR	10089823	10089824	.	-	.	Parent=Os02t0275200-02
Chr02	irgsp1_rep	CDS	10088449	10089822	.	-	0	Parent=Os02t0275200-02
Chr02	irgsp1_rep	three_prime_UTR	10088213	10088448	.	-	.	Parent=Os02t0275200-02
Chr02	irgsp1_rep	mRNA	10094221	10094565	.	+	.	ID=Os02t0275300-01;Name=Os02t0275300-01;Locus_id=Os02g0275300;Note=Non-protein coding transcript.;Transcript_evidence=AK059207 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-024-B05;TENOR=Os02t0275300-01
Chr02	irgsp1_rep	exon	10094221	10094565	.	+	.	Parent=Os02t0275300-01
Chr02	irgsp1_rep	mRNA	10135285	10143931	.	-	.	ID=Os02t0276200-01;Name=Os02t0276200-01;Locus_id=Os02g0276200;Note=Similar to Isochorismatase family protein rutB.;Transcript_evidence=AK242337 (DDBJ%2C Best hit);ORF_evidence=B6T5J6 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Isochorismatase-like (IPR000868);NIAS_FLcDNA=J075199I16;TENOR=Os02t0276200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	10143662	10143931	.	-	.	Parent=Os02t0276200-01
Chr02	irgsp1_rep	five_prime_UTR	10143351	10143356	.	-	.	Parent=Os02t0276200-01
Chr02	irgsp1_rep	CDS	10143228	10143350	.	-	0	Parent=Os02t0276200-01
Chr02	irgsp1_rep	CDS	10139712	10139943	.	-	0	Parent=Os02t0276200-01
Chr02	irgsp1_rep	CDS	10139318	10139434	.	-	2	Parent=Os02t0276200-01
Chr02	irgsp1_rep	CDS	10135532	10135596	.	-	2	Parent=Os02t0276200-01
Chr02	irgsp1_rep	three_prime_UTR	10135285	10135531	.	-	.	Parent=Os02t0276200-01
Chr02	irgsp1_rep	mRNA	10152183	10155192	.	-	.	ID=Os02t0276400-01;Name=Os02t0276400-01;Locus_id=Os02g0276400;Note=Similar to Isochorismatase family protein rutB.;Transcript_evidence=AK100588 (DDBJ%2C Best hit);ORF_evidence=B6T5J6 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Isochorismatase-like (IPR000868);NIAS_FLcDNA=J023106D13;TENOR=Os02t0276400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	10155088	10155192	.	-	.	Parent=Os02t0276400-01
Chr02	irgsp1_rep	CDS	10155016	10155087	.	-	0	Parent=Os02t0276400-01
Chr02	irgsp1_rep	CDS	10154817	10154936	.	-	0	Parent=Os02t0276400-01
Chr02	irgsp1_rep	CDS	10153590	10153821	.	-	0	Parent=Os02t0276400-01
Chr02	irgsp1_rep	CDS	10153138	10153254	.	-	2	Parent=Os02t0276400-01
Chr02	irgsp1_rep	CDS	10152385	10152449	.	-	2	Parent=Os02t0276400-01
Chr02	irgsp1_rep	three_prime_UTR	10152183	10152384	.	-	.	Parent=Os02t0276400-01
Chr02	irgsp1_rep	mRNA	10155843	10164739	.	-	.	ID=Os02t0276500-01;Name=Os02t0276500-01;Locus_id=Os02g0276500;Oryzabase Gene Symbol Synonym(s)=OsVTE1;Oryzabase Gene Name Synonym(s)=tocopherol cyclase%2C VITAMIN E DEFICIENT 1;Note=Similar to Tocopherol cyclase.;Transcript_evidence=AK072052 (DDBJ%2C Best hit);ORF_evidence=Q1PBH3 (UniProt);NIAS_FLcDNA=J013111I10;Oryzabase=9336;Expression=AK072052;TENOR=Os02t0276500-01;KEGG=Os02t0276500-01
Chr02	irgsp1_rep	five_prime_UTR	10164713	10164739	.	-	.	Parent=Os02t0276500-01
Chr02	irgsp1_rep	CDS	10164516	10164712	.	-	0	Parent=Os02t0276500-01
Chr02	irgsp1_rep	CDS	10164100	10164344	.	-	1	Parent=Os02t0276500-01
Chr02	irgsp1_rep	CDS	10162829	10162908	.	-	2	Parent=Os02t0276500-01
Chr02	irgsp1_rep	CDS	10162080	10162157	.	-	0	Parent=Os02t0276500-01
Chr02	irgsp1_rep	CDS	10160496	10160664	.	-	0	Parent=Os02t0276500-01
Chr02	irgsp1_rep	CDS	10159952	10160049	.	-	2	Parent=Os02t0276500-01
Chr02	irgsp1_rep	CDS	10159079	10159183	.	-	0	Parent=Os02t0276500-01
Chr02	irgsp1_rep	CDS	10158121	10158237	.	-	0	Parent=Os02t0276500-01
Chr02	irgsp1_rep	CDS	10157667	10157816	.	-	0	Parent=Os02t0276500-01
Chr02	irgsp1_rep	CDS	10156396	10156569	.	-	0	Parent=Os02t0276500-01
Chr02	irgsp1_rep	three_prime_UTR	10155843	10156395	.	-	.	Parent=Os02t0276500-01
Chr02	irgsp1_rep	mRNA	10181518	10188932	.	-	.	ID=Os02t0276900-01;Name=Os02t0276900-01;Locus_id=Os02g0276900;Oryzabase Gene Symbol Synonym(s)=OsbHLH072;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 072;Note=Basic helix-loop-helix dimerisation region bHLH domain containing protein.;Transcript_evidence=AK072848 (DDBJ%2C Best hit);ORF_evidence=Q6K7V4 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J023142E18;Oryzabase=15359;Expression=AK072848;TENOR=Os02t0276900-01;KEGG=Os02t0276900-01
Chr02	irgsp1_rep	five_prime_UTR	10188906	10188932	.	-	.	Parent=Os02t0276900-01
Chr02	irgsp1_rep	CDS	10188583	10188905	.	-	0	Parent=Os02t0276900-01
Chr02	irgsp1_rep	CDS	10188049	10188403	.	-	1	Parent=Os02t0276900-01
Chr02	irgsp1_rep	CDS	10187663	10187740	.	-	0	Parent=Os02t0276900-01
Chr02	irgsp1_rep	CDS	10187361	10187426	.	-	0	Parent=Os02t0276900-01
Chr02	irgsp1_rep	CDS	10186428	10186493	.	-	0	Parent=Os02t0276900-01
Chr02	irgsp1_rep	CDS	10185084	10185191	.	-	0	Parent=Os02t0276900-01
Chr02	irgsp1_rep	CDS	10182674	10182718	.	-	0	Parent=Os02t0276900-01
Chr02	irgsp1_rep	CDS	10182329	10182373	.	-	0	Parent=Os02t0276900-01
Chr02	irgsp1_rep	CDS	10182013	10182165	.	-	0	Parent=Os02t0276900-01
Chr02	irgsp1_rep	three_prime_UTR	10181518	10182012	.	-	.	Parent=Os02t0276900-01
Chr02	irgsp1_rep	mRNA	10207347	10212946	.	+	.	ID=Os02t0277600-01;Name=Os02t0277600-01;Locus_id=Os02g0277600;CGSNL Gene Symbol=ISC21;CGSNL Gene Name=IRON-SULFUR CLUSTER PROTEIN 21;Oryzabase Gene Symbol Synonym(s)=OsISC21;Oryzabase Gene Name Synonym(s)=Iron-sulfur cluster protein 21;Note=Similar to MFDR (NADP adrenodoxin-like ferredoxin reductase).;Transcript_evidence=AK110791 (DDBJ%2C Best hit);ORF_evidence=B6U923 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=NAD(P)-binding domain (IPR016040),Ferredoxin-NADP (+) reductase (IPR021163),Pyridine nucleotide-disulphide oxidoreductase%2C FAD/NAD(P)-binding domain (IPR023753);NIAS_FLcDNA=002-171-D01;Oryzabase=13433;Expression=AK110791;TENOR=Os02t0277600-01;KEGG=Os02t0277600-01 (EC:1.18.1.2)
Chr02	irgsp1_rep	five_prime_UTR	10207347	10207470	.	+	.	Parent=Os02t0277600-01
Chr02	irgsp1_rep	CDS	10207471	10207632	.	+	0	Parent=Os02t0277600-01
Chr02	irgsp1_rep	CDS	10208028	10208132	.	+	0	Parent=Os02t0277600-01
Chr02	irgsp1_rep	CDS	10209158	10209271	.	+	0	Parent=Os02t0277600-01
Chr02	irgsp1_rep	CDS	10209379	10209432	.	+	0	Parent=Os02t0277600-01
Chr02	irgsp1_rep	CDS	10209853	10209969	.	+	0	Parent=Os02t0277600-01
Chr02	irgsp1_rep	CDS	10210432	10210541	.	+	0	Parent=Os02t0277600-01
Chr02	irgsp1_rep	CDS	10210654	10210727	.	+	1	Parent=Os02t0277600-01
Chr02	irgsp1_rep	CDS	10210823	10210884	.	+	2	Parent=Os02t0277600-01
Chr02	irgsp1_rep	CDS	10211142	10211337	.	+	0	Parent=Os02t0277600-01
Chr02	irgsp1_rep	CDS	10211408	10211471	.	+	2	Parent=Os02t0277600-01
Chr02	irgsp1_rep	CDS	10211691	10211758	.	+	1	Parent=Os02t0277600-01
Chr02	irgsp1_rep	CDS	10211876	10212018	.	+	2	Parent=Os02t0277600-01
Chr02	irgsp1_rep	CDS	10212423	10212653	.	+	0	Parent=Os02t0277600-01
Chr02	irgsp1_rep	three_prime_UTR	10212654	10212946	.	+	.	Parent=Os02t0277600-01
Chr02	irgsp1_rep	mRNA	10213163	10216340	.	-	.	ID=Os02t0277700-01;Name=Os02t0277700-01;Locus_id=Os02g0277700;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=AK120092 (DDBJ%2C Best hit);ORF_evidence=A3A5I7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J013021H05;TENOR=Os02t0277700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	10214481	10216340	.	-	0	Parent=Os02t0277700-01
Chr02	irgsp1_rep	three_prime_UTR	10214115	10214480	.	-	.	Parent=Os02t0277700-01
Chr02	irgsp1_rep	three_prime_UTR	10213163	10213886	.	-	.	Parent=Os02t0277700-01
Chr02	irgsp1_rep	mRNA	10262000	10268672	.	+	.	ID=Os02t0278400-01;Name=Os02t0278400-01;Locus_id=Os02g0278400;Note=CytoChrome P450 family protein.;Transcript_evidence=AK067549 (DDBJ%2C Best hit);ORF_evidence=Q52PG2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J013111A01;Expression=AK067549;TENOR=Os02t0278400-01;KEGG=Os02t0278400-01 (EC:1.14.99.9)
Chr02	irgsp1_rep	five_prime_UTR	10262000	10262024	.	+	.	Parent=Os02t0278400-01
Chr02	irgsp1_rep	CDS	10262025	10262963	.	+	0	Parent=Os02t0278400-01
Chr02	irgsp1_rep	CDS	10265951	10266592	.	+	0	Parent=Os02t0278400-01
Chr02	irgsp1_rep	three_prime_UTR	10266593	10268672	.	+	.	Parent=Os02t0278400-01
Chr02	irgsp1_rep	mRNA	10262025	10263793	.	+	.	ID=Os02t0278400-02;Name=Os02t0278400-02;Locus_id=Os02g0278400;Note=Similar to CytoChrome P450 monooxygenase CYP71U4v2.;Transcript_evidence=AK065204 (DDBJ%2C Best hit);ORF_evidence=Q52PG2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);NIAS_FLcDNA=J013002F08;Expression=AK065204;TENOR=Os02t0278400-02;KEGG=Os02t0278400-02
Chr02	irgsp1_rep	CDS	10262025	10263008	.	+	0	Parent=Os02t0278400-02
Chr02	irgsp1_rep	three_prime_UTR	10263009	10263793	.	+	.	Parent=Os02t0278400-02
Chr02	irgsp1_rep	mRNA	10262060	10266551	.	-	.	ID=Os02t0278450-00;Name=Os02t0278450-00;Locus_id=Os02g0278450;Note=Hypothetical protein.;Transcript_evidence=tplb0024g24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0278450-00
Chr02	irgsp1_rep	five_prime_UTR	10266103	10266551	.	-	.	Parent=Os02t0278450-00
Chr02	irgsp1_rep	CDS	10265971	10266102	.	-	0	Parent=Os02t0278450-00
Chr02	irgsp1_rep	CDS	10262060	10262975	.	-	0	Parent=Os02t0278450-00
Chr02	irgsp1_rep	mRNA	10273719	10283727	.	-	.	ID=Os02t0278700-01;Name=Os02t0278700-01;Locus_id=Os02g0278700;CGSNL Gene Symbol=CPS1;CGSNL Gene Name=ENT-COPALYL DIPHOSPHATE SYNTHASE 1;Oryzabase Gene Symbol Synonym(s)=OsCPS1%2C OsCPS1ent%2C OsCPS%2C Os CPS1%2C OsTPS4;Oryzabase Gene Name Synonym(s)=rice ent-copalyl diphosphate (CDP) synthase1%2C ent-copalyl diphosphate synthase 1%2C "Ent-copalyl diphosphate synthase 1%2C chloroplastic"%2C Ent-CDP synthase 1%2C terpene synthase 4;Note=Similar to Kaurene synthase A (Fragment).;Transcript_evidence=AK100333 (DDBJ%2C Best hit);ORF_evidence=Q6ET36 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: lyase activity (GO:0016829);InterPro=Terpene synthase-like (IPR001906),Terpene synthase%2C metal-binding domain (IPR005630),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930),Terpenoid synthase (IPR008949);NIAS_FLcDNA=J023080N01;Oryzabase=3127;Expression=AK100333;TENOR=Os02t0278700-01;KEGG=Os02t0278700-01 (EC:5.5.1.13)
Chr02	irgsp1_rep	five_prime_UTR	10283605	10283727	.	-	.	Parent=Os02t0278700-01
Chr02	irgsp1_rep	CDS	10283484	10283604	.	-	0	Parent=Os02t0278700-01
Chr02	irgsp1_rep	CDS	10283234	10283389	.	-	2	Parent=Os02t0278700-01
Chr02	irgsp1_rep	CDS	10279057	10279151	.	-	2	Parent=Os02t0278700-01
Chr02	irgsp1_rep	CDS	10278641	10278950	.	-	0	Parent=Os02t0278700-01
Chr02	irgsp1_rep	CDS	10277944	10278127	.	-	2	Parent=Os02t0278700-01
Chr02	irgsp1_rep	CDS	10277543	10277757	.	-	1	Parent=Os02t0278700-01
Chr02	irgsp1_rep	CDS	10277304	10277424	.	-	2	Parent=Os02t0278700-01
Chr02	irgsp1_rep	CDS	10277066	10277178	.	-	1	Parent=Os02t0278700-01
Chr02	irgsp1_rep	CDS	10276715	10276941	.	-	2	Parent=Os02t0278700-01
Chr02	irgsp1_rep	CDS	10276468	10276583	.	-	0	Parent=Os02t0278700-01
Chr02	irgsp1_rep	CDS	10276261	10276359	.	-	1	Parent=Os02t0278700-01
Chr02	irgsp1_rep	CDS	10275911	10276153	.	-	1	Parent=Os02t0278700-01
Chr02	irgsp1_rep	CDS	10275105	10275231	.	-	1	Parent=Os02t0278700-01
Chr02	irgsp1_rep	CDS	10274777	10275025	.	-	0	Parent=Os02t0278700-01
Chr02	irgsp1_rep	CDS	10273934	10274161	.	-	0	Parent=Os02t0278700-01
Chr02	irgsp1_rep	three_prime_UTR	10273719	10273933	.	-	.	Parent=Os02t0278700-01
Chr02	irgsp1_rep	mRNA	10273760	10278924	.	+	.	ID=Os02t0279150-00;Name=Os02t0279150-00;Locus_id=Os02g0279150;Note=Hypothetical protein.;Transcript_evidence=tplb0042n04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0279150-00
Chr02	irgsp1_rep	five_prime_UTR	10273760	10274141	.	+	.	Parent=Os02t0279150-00
Chr02	irgsp1_rep	five_prime_UTR	10274754	10275025	.	+	.	Parent=Os02t0279150-00
Chr02	irgsp1_rep	five_prime_UTR	10275105	10275249	.	+	.	Parent=Os02t0279150-00
Chr02	irgsp1_rep	five_prime_UTR	10275938	10276151	.	+	.	Parent=Os02t0279150-00
Chr02	irgsp1_rep	five_prime_UTR	10276259	10276358	.	+	.	Parent=Os02t0279150-00
Chr02	irgsp1_rep	five_prime_UTR	10276467	10276574	.	+	.	Parent=Os02t0279150-00
Chr02	irgsp1_rep	five_prime_UTR	10276708	10276939	.	+	.	Parent=Os02t0279150-00
Chr02	irgsp1_rep	five_prime_UTR	10277064	10277185	.	+	.	Parent=Os02t0279150-00
Chr02	irgsp1_rep	five_prime_UTR	10277316	10277426	.	+	.	Parent=Os02t0279150-00
Chr02	irgsp1_rep	five_prime_UTR	10277545	10277768	.	+	.	Parent=Os02t0279150-00
Chr02	irgsp1_rep	five_prime_UTR	10277952	10278129	.	+	.	Parent=Os02t0279150-00
Chr02	irgsp1_rep	five_prime_UTR	10278642	10278656	.	+	.	Parent=Os02t0279150-00
Chr02	irgsp1_rep	CDS	10278657	10278924	.	+	0	Parent=Os02t0279150-00
Chr02	irgsp1_rep	mRNA	10330699	10333765	.	+	.	ID=Os02t0279600-00;Name=Os02t0279600-00;Locus_id=Os02g0279600;Note=Similar to TOM2B.;Transcript_evidence=CT835461 (DDBJ%2C Best hit);ORF_evidence=B6SX44 (UniProt);TENOR=Os02t0279600-00;KEGG=Os02t0279600-00
Chr02	irgsp1_rep	five_prime_UTR	10330699	10330724	.	+	.	Parent=Os02t0279600-00
Chr02	irgsp1_rep	CDS	10330725	10330853	.	+	0	Parent=Os02t0279600-00
Chr02	irgsp1_rep	CDS	10332071	10332136	.	+	0	Parent=Os02t0279600-00
Chr02	irgsp1_rep	CDS	10332200	10332264	.	+	0	Parent=Os02t0279600-00
Chr02	irgsp1_rep	CDS	10332436	10332568	.	+	1	Parent=Os02t0279600-00
Chr02	irgsp1_rep	three_prime_UTR	10332569	10332617	.	+	.	Parent=Os02t0279600-00
Chr02	irgsp1_rep	three_prime_UTR	10333414	10333765	.	+	.	Parent=Os02t0279600-00
Chr02	irgsp1_rep	mRNA	10338762	10342350	.	+	.	ID=Os02t0279800-01;Name=Os02t0279800-01;Locus_id=Os02g0279800;Note=Conserved hypothetical protein.;Transcript_evidence=AK070586 (DDBJ%2C Best hit);ORF_evidence=B9F504 (UniProt);NIAS_FLcDNA=J023061B03;TENOR=Os02t0279800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	10338762	10338762	.	+	.	Parent=Os02t0279800-01
Chr02	irgsp1_rep	CDS	10338763	10339025	.	+	0	Parent=Os02t0279800-01
Chr02	irgsp1_rep	CDS	10341818	10341824	.	+	1	Parent=Os02t0279800-01
Chr02	irgsp1_rep	three_prime_UTR	10341825	10342350	.	+	.	Parent=Os02t0279800-01
Chr02	irgsp1_rep	mRNA	10351706	10352360	.	-	.	ID=Os02t0280000-01;Name=Os02t0280000-01;Locus_id=Os02g0280000;Note=Hypothetical gene.;Transcript_evidence=AK060301 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-006-H07;Expression=AK060301;TENOR=Os02t0280000-01;KEGG=Os02t0280000-01
Chr02	irgsp1_rep	five_prime_UTR	10352331	10352360	.	-	.	Parent=Os02t0280000-01
Chr02	irgsp1_rep	CDS	10352112	10352330	.	-	0	Parent=Os02t0280000-01
Chr02	irgsp1_rep	three_prime_UTR	10351706	10352111	.	-	.	Parent=Os02t0280000-01
Chr02	irgsp1_rep	mRNA	10352385	10354072	.	-	.	ID=Os02t0280100-00;Name=Os02t0280100-00;Locus_id=Os02g0280100;Note=Micro-fibrillar-associated 1%2C C-terminal family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001046553.1 (RefSeq);InterPro=Micro-fibrillar-associated 1%2C C-terminal (IPR009730);TENOR=Os02t0280100-00;KEGG=Os02t0280100-00
Chr02	irgsp1_rep	CDS	10352889	10354072	.	-	0	Parent=Os02t0280100-00
Chr02	irgsp1_rep	CDS	10352385	10352508	.	-	1	Parent=Os02t0280100-00
Chr02	irgsp1_rep	mRNA	10359560	10360971	.	+	.	ID=Os02t0280200-00;Name=Os02t0280200-00;Locus_id=Os02g0280200;CGSNL Gene Symbol=XTH13;CGSNL Gene Name=XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 13;Oryzabase Gene Symbol Synonym(s)=OsXTH13;Oryzabase Gene Name Synonym(s)=xyloglucan endotransglucosylase/hydrolase%2C xyloglucan endotransglucosylase 13;Note=Similar to Xyloglucan endotransglucosylase/hydrolase protein 26.;Transcript_evidence=BT064043 (DDBJ);ORF_evidence=B6TWP1 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 16 (IPR000757),Glycoside hydrolase%2C family 16%2C active site (IPR008263),Concanavalin A-like lectin/glucanase (IPR008985),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320);Oryzabase=6493;TENOR=Os02t0280200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	10359560	10359850	.	+	0	Parent=Os02t0280200-00
Chr02	irgsp1_rep	CDS	10359995	10360186	.	+	0	Parent=Os02t0280200-00
Chr02	irgsp1_rep	CDS	10360555	10360971	.	+	0	Parent=Os02t0280200-00
Chr02	irgsp1_rep	mRNA	10371074	10378201	.	+	.	ID=Os02t0280400-01;Name=Os02t0280400-01;Locus_id=Os02g0280400;Note=Similar to casein kinase I isoform delta-like.;Transcript_evidence=AK111701 (DDBJ%2C Best hit);ORF_evidence=NP_001148106.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023007D20;Expression=AK111701;TENOR=Os02t0280400-01;KEGG=Os02t0280400-01 (EC:2.7.11.1)
Chr02	irgsp1_rep	five_prime_UTR	10371074	10371394	.	+	.	Parent=Os02t0280400-01
Chr02	irgsp1_rep	CDS	10371395	10371470	.	+	0	Parent=Os02t0280400-01
Chr02	irgsp1_rep	CDS	10371589	10371629	.	+	2	Parent=Os02t0280400-01
Chr02	irgsp1_rep	CDS	10373274	10373343	.	+	0	Parent=Os02t0280400-01
Chr02	irgsp1_rep	CDS	10373432	10373580	.	+	2	Parent=Os02t0280400-01
Chr02	irgsp1_rep	CDS	10374079	10374174	.	+	0	Parent=Os02t0280400-01
Chr02	irgsp1_rep	CDS	10374249	10374319	.	+	0	Parent=Os02t0280400-01
Chr02	irgsp1_rep	CDS	10374449	10374510	.	+	1	Parent=Os02t0280400-01
Chr02	irgsp1_rep	CDS	10374699	10374766	.	+	2	Parent=Os02t0280400-01
Chr02	irgsp1_rep	three_prime_UTR	10374767	10375309	.	+	.	Parent=Os02t0280400-01
Chr02	irgsp1_rep	three_prime_UTR	10375396	10375469	.	+	.	Parent=Os02t0280400-01
Chr02	irgsp1_rep	three_prime_UTR	10375706	10375760	.	+	.	Parent=Os02t0280400-01
Chr02	irgsp1_rep	three_prime_UTR	10375863	10375987	.	+	.	Parent=Os02t0280400-01
Chr02	irgsp1_rep	three_prime_UTR	10376199	10376403	.	+	.	Parent=Os02t0280400-01
Chr02	irgsp1_rep	three_prime_UTR	10377033	10377519	.	+	.	Parent=Os02t0280400-01
Chr02	irgsp1_rep	three_prime_UTR	10377612	10378201	.	+	.	Parent=Os02t0280400-01
Chr02	irgsp1_rep	mRNA	10371127	10377368	.	+	.	ID=Os02t0280400-02;Name=Os02t0280400-02;Locus_id=Os02g0280400;Note=Similar to Dual specificity kinase 1.;Transcript_evidence=AK111597 (DDBJ%2C Best hit);ORF_evidence=NP_001148106.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635),Casein kinase 1 gamma C-terminal (IPR022247);NIAS_FLcDNA=J013095J03;Expression=AK111597;TENOR=Os02t0280400-02;KEGG=Os02t0280400-02 (EC:2.7.11.1)
Chr02	irgsp1_rep	five_prime_UTR	10371127	10371394	.	+	.	Parent=Os02t0280400-02
Chr02	irgsp1_rep	CDS	10371395	10371470	.	+	0	Parent=Os02t0280400-02
Chr02	irgsp1_rep	CDS	10371589	10371629	.	+	2	Parent=Os02t0280400-02
Chr02	irgsp1_rep	CDS	10373274	10373343	.	+	0	Parent=Os02t0280400-02
Chr02	irgsp1_rep	CDS	10373432	10373580	.	+	2	Parent=Os02t0280400-02
Chr02	irgsp1_rep	CDS	10374079	10374174	.	+	0	Parent=Os02t0280400-02
Chr02	irgsp1_rep	CDS	10374249	10374319	.	+	0	Parent=Os02t0280400-02
Chr02	irgsp1_rep	CDS	10374449	10374510	.	+	1	Parent=Os02t0280400-02
Chr02	irgsp1_rep	CDS	10374699	10374762	.	+	2	Parent=Os02t0280400-02
Chr02	irgsp1_rep	CDS	10375009	10375093	.	+	1	Parent=Os02t0280400-02
Chr02	irgsp1_rep	CDS	10375183	10375309	.	+	0	Parent=Os02t0280400-02
Chr02	irgsp1_rep	CDS	10375396	10375469	.	+	2	Parent=Os02t0280400-02
Chr02	irgsp1_rep	CDS	10375706	10375760	.	+	0	Parent=Os02t0280400-02
Chr02	irgsp1_rep	CDS	10375863	10375987	.	+	2	Parent=Os02t0280400-02
Chr02	irgsp1_rep	CDS	10376199	10376354	.	+	0	Parent=Os02t0280400-02
Chr02	irgsp1_rep	three_prime_UTR	10376355	10376403	.	+	.	Parent=Os02t0280400-02
Chr02	irgsp1_rep	three_prime_UTR	10377033	10377368	.	+	.	Parent=Os02t0280400-02
Chr02	irgsp1_rep	mRNA	10376364	10380939	.	+	.	ID=Os02t0280400-03;Name=Os02t0280400-03;Locus_id=Os02g0280400;Note=Hypothetical gene.;Transcript_evidence=AK109512 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-104-G08;Expression=AK109512;TENOR=Os02t0280400-03;KEGG=Os02t0280400-03
Chr02	irgsp1_rep	five_prime_UTR	10376364	10376403	.	+	.	Parent=Os02t0280400-03
Chr02	irgsp1_rep	five_prime_UTR	10377033	10377156	.	+	.	Parent=Os02t0280400-03
Chr02	irgsp1_rep	five_prime_UTR	10377358	10377519	.	+	.	Parent=Os02t0280400-03
Chr02	irgsp1_rep	five_prime_UTR	10377612	10380160	.	+	.	Parent=Os02t0280400-03
Chr02	irgsp1_rep	CDS	10380161	10380457	.	+	0	Parent=Os02t0280400-03
Chr02	irgsp1_rep	three_prime_UTR	10380458	10380939	.	+	.	Parent=Os02t0280400-03
Chr02	irgsp1_rep	mRNA	10378457	10379197	.	-	.	ID=Os02t0280500-01;Name=Os02t0280500-01;Locus_id=Os02g0280500;CGSNL Gene Symbol=GLYI2;CGSNL Gene Name=GLYOXALASE I-2;Oryzabase Gene Symbol Synonym(s)=OsGLYI2;Oryzabase Gene Name Synonym(s)=glyoxalase I-2;Note=Similar to Glyoxalase I.;Transcript_evidence=AK058486 (DDBJ%2C Best hit);ORF_evidence=Q6ES23 (UniProt);NIAS_FLcDNA=001-016-D09;Oryzabase=9352;Expression=AK058486;TENOR=Os02t0280500-01;KEGG=Os02t0280500-01
Chr02	irgsp1_rep	CDS	10379132	10379197	.	-	0	Parent=Os02t0280500-01
Chr02	irgsp1_rep	CDS	10378879	10379019	.	-	0	Parent=Os02t0280500-01
Chr02	irgsp1_rep	CDS	10378737	10378778	.	-	0	Parent=Os02t0280500-01
Chr02	irgsp1_rep	three_prime_UTR	10378457	10378736	.	-	.	Parent=Os02t0280500-01
Chr02	irgsp1_rep	mRNA	10386299	10390289	.	+	.	ID=Os02t0280700-01;Name=Os02t0280700-01;Locus_id=Os02g0280700;RAP-DB Gene Symbol Synonym(s)=HIS1;RAP-DB Gene Name Synonym(s)=HPPD INHIBITOR SENSITIVE 1;CGSNL Gene Symbol=HIS1;CGSNL Gene Name=HPPD INHIBITOR SENSITIVE 1;Oryzabase Gene Symbol Synonym(s)=2-ODD12%2C Os2-ODD12%2C Os2ODD12%2C 2ODD12%2C OsHIS1;Oryzabase Gene Name Synonym(s)=2-oxoglutarate-dependent dioxygenase 12;Note=Fe(II)/2-oxoglutarate-dependent oxygenase%2C Resistance to benzobicyclon (BBC) and other &beta%3B-triketone herbicides;Transcript_evidence=AK065581;ORF_evidence=Q6ES21;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Isopenicillin N synthase-like (IPR027443),Non-haem dioxygenase N-terminal domain (IPR026992),Oxoglutarate/iron-dependent dioxygenase (IPR005123);NIAS_FLcDNA=J013034J09;Manual Curation=April 7%2C 2020;Literature_PMID=31346065;Oryzabase=22618;Expression=AK065581;TENOR=Os02t0280700-01;KEGG=Os02t0280700-01
Chr02	irgsp1_rep	five_prime_UTR	10386299	10386549	.	+	.	Parent=Os02t0280700-01
Chr02	irgsp1_rep	five_prime_UTR	10388161	10388254	.	+	.	Parent=Os02t0280700-01
Chr02	irgsp1_rep	CDS	10388255	10388482	.	+	0	Parent=Os02t0280700-01
Chr02	irgsp1_rep	CDS	10388577	10388836	.	+	0	Parent=Os02t0280700-01
Chr02	irgsp1_rep	CDS	10389062	10389386	.	+	1	Parent=Os02t0280700-01
Chr02	irgsp1_rep	CDS	10389721	10389963	.	+	0	Parent=Os02t0280700-01
Chr02	irgsp1_rep	three_prime_UTR	10389964	10390289	.	+	.	Parent=Os02t0280700-01
Chr02	irgsp1_rep	mRNA	10388265	10389963	.	-	.	ID=Os02t0280850-00;Name=Os02t0280850-00;Locus_id=Os02g0280850;Note=Hypothetical protein.;Transcript_evidence=AK373427 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0280850-00
Chr02	irgsp1_rep	five_prime_UTR	10389945	10389963	.	-	.	Parent=Os02t0280850-00
Chr02	irgsp1_rep	CDS	10389639	10389944	.	-	0	Parent=Os02t0280850-00
Chr02	irgsp1_rep	CDS	10389350	10389394	.	-	0	Parent=Os02t0280850-00
Chr02	irgsp1_rep	three_prime_UTR	10389004	10389349	.	-	.	Parent=Os02t0280850-00
Chr02	irgsp1_rep	three_prime_UTR	10388265	10388870	.	-	.	Parent=Os02t0280850-00
Chr02	irgsp1_rep	mRNA	10419062	10428014	.	+	.	ID=Os02t0281000-01;Name=Os02t0281000-01;Locus_id=Os02g0281000;RAP-DB Gene Symbol Synonym(s)=OsPKG;RAP-DB Gene Name Synonym(s)=cGMP-dependent protein kinase;Oryzabase Gene Symbol Synonym(s)=OsPP23%2C PP23%2C PKG%2C OsPKG;Oryzabase Gene Name Synonym(s)=Protein phosphatase 23%2C cGMP-Dependent Protein Kinase;Note=cGMP-dependent protein kinase%2C Mediation of gibberellin signaling%2C Salt stress response;Transcript_evidence=AK068697;ORF_evidence=Q6K3D4;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: cation binding (GO:0043169);InterPro=PPM-type phosphatase domain superfamily (IPR036457),RmlC-like jelly roll fold (IPR014710),Cyclic nucleotide-binding-like (IPR018490),Protein kinase-like domain superfamily (IPR011009),PPM-type phosphatase domain (IPR001932),Cyclic nucleotide-binding domain (IPR000595),Protein kinase domain (IPR000719),PPM-type phosphatase%2C divalent cation binding (IPR000222);NIAS_FLcDNA=J013158A09;Manual Curation=October 8%2C 2019;Literature_PMID=31575723;Oryzabase=18631;Expression=AK068697;TENOR=Os02t0281000-01;KEGG=Os02t0281000-01
Chr02	irgsp1_rep	five_prime_UTR	10419062	10419414	.	+	.	Parent=Os02t0281000-01
Chr02	irgsp1_rep	five_prime_UTR	10421226	10421486	.	+	.	Parent=Os02t0281000-01
Chr02	irgsp1_rep	CDS	10421487	10422563	.	+	0	Parent=Os02t0281000-01
Chr02	irgsp1_rep	CDS	10422917	10423048	.	+	0	Parent=Os02t0281000-01
Chr02	irgsp1_rep	CDS	10423134	10423358	.	+	0	Parent=Os02t0281000-01
Chr02	irgsp1_rep	CDS	10423457	10423582	.	+	0	Parent=Os02t0281000-01
Chr02	irgsp1_rep	CDS	10423679	10423741	.	+	0	Parent=Os02t0281000-01
Chr02	irgsp1_rep	CDS	10424116	10424198	.	+	0	Parent=Os02t0281000-01
Chr02	irgsp1_rep	CDS	10424980	10425211	.	+	1	Parent=Os02t0281000-01
Chr02	irgsp1_rep	CDS	10425323	10425633	.	+	0	Parent=Os02t0281000-01
Chr02	irgsp1_rep	CDS	10425721	10425796	.	+	1	Parent=Os02t0281000-01
Chr02	irgsp1_rep	CDS	10425917	10425983	.	+	0	Parent=Os02t0281000-01
Chr02	irgsp1_rep	CDS	10426096	10426373	.	+	2	Parent=Os02t0281000-01
Chr02	irgsp1_rep	CDS	10426502	10426689	.	+	0	Parent=Os02t0281000-01
Chr02	irgsp1_rep	CDS	10427137	10427293	.	+	1	Parent=Os02t0281000-01
Chr02	irgsp1_rep	CDS	10427398	10427643	.	+	0	Parent=Os02t0281000-01
Chr02	irgsp1_rep	three_prime_UTR	10427644	10428014	.	+	.	Parent=Os02t0281000-01
Chr02	irgsp1_rep	mRNA	10422504	10423434	.	+	.	ID=Os02t0281000-02;Name=Os02t0281000-02;Locus_id=Os02g0281000;Oryzabase Gene Symbol Synonym(s)=OsPP23%2C PP23%2C PKG%2C OsPKG;Oryzabase Gene Name Synonym(s)=Protein phosphatase 23%2C cGMP-Dependent Protein Kinase;Note=Similar to predicted protein.;Transcript_evidence=AK062696 (DDBJ%2C Best hit);ORF_evidence=NP_179595.5 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=001-106-A09;Oryzabase=18631;TENOR=Os02t0281000-02
Chr02	irgsp1_rep	CDS	10422504	10422563	.	+	0	Parent=Os02t0281000-02
Chr02	irgsp1_rep	CDS	10422917	10423048	.	+	0	Parent=Os02t0281000-02
Chr02	irgsp1_rep	CDS	10423134	10423434	.	+	0	Parent=Os02t0281000-02
Chr02	irgsp1_rep	mRNA	10427372	10427660	.	-	.	ID=Os02t0281101-00;Name=Os02t0281101-00;Locus_id=Os02g0281101;Note=Hypothetical gene.;Transcript_evidence=EU950698 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0281101-00;KEGG=Os02t0281101-00
Chr02	irgsp1_rep	five_prime_UTR	10427659	10427660	.	-	.	Parent=Os02t0281101-00
Chr02	irgsp1_rep	CDS	10427398	10427658	.	-	0	Parent=Os02t0281101-00
Chr02	irgsp1_rep	three_prime_UTR	10427372	10427397	.	-	.	Parent=Os02t0281101-00
Chr02	irgsp1_rep	mRNA	10437396	10440764	.	+	.	ID=Os02t0281150-01;Name=Os02t0281150-01;Locus_id=Os02g0281150;Note=Similar to Leucine Rich Repeat family protein.;Transcript_evidence=AK287715 (DDBJ%2C Best hit);ORF_evidence=B6TJW6 (UniProt);InterPro=Leucine-rich repeat%2C cysteine-containing subtype (IPR006553);NIAS_FLcDNA=J065134A01;TENOR=Os02t0281150-01;KEGG=Os02t0281150-01
Chr02	irgsp1_rep	CDS	10437396	10437575	.	+	0	Parent=Os02t0281150-01
Chr02	irgsp1_rep	CDS	10438084	10438142	.	+	0	Parent=Os02t0281150-01
Chr02	irgsp1_rep	CDS	10438388	10438472	.	+	1	Parent=Os02t0281150-01
Chr02	irgsp1_rep	CDS	10438569	10438699	.	+	0	Parent=Os02t0281150-01
Chr02	irgsp1_rep	CDS	10438775	10438850	.	+	1	Parent=Os02t0281150-01
Chr02	irgsp1_rep	CDS	10439268	10439338	.	+	0	Parent=Os02t0281150-01
Chr02	irgsp1_rep	CDS	10439461	10439547	.	+	1	Parent=Os02t0281150-01
Chr02	irgsp1_rep	CDS	10439627	10439699	.	+	1	Parent=Os02t0281150-01
Chr02	irgsp1_rep	CDS	10439783	10439850	.	+	0	Parent=Os02t0281150-01
Chr02	irgsp1_rep	CDS	10439922	10439990	.	+	1	Parent=Os02t0281150-01
Chr02	irgsp1_rep	CDS	10440062	10440167	.	+	1	Parent=Os02t0281150-01
Chr02	irgsp1_rep	CDS	10440474	10440539	.	+	0	Parent=Os02t0281150-01
Chr02	irgsp1_rep	three_prime_UTR	10440540	10440764	.	+	.	Parent=Os02t0281150-01
Chr02	irgsp1_rep	mRNA	10444568	10450918	.	+	.	ID=Os02t0281200-01;Name=Os02t0281200-01;Locus_id=Os02g0281200;Note=Similar to NBS-LRR protein (Fragment).;Transcript_evidence=AK121583 (DDBJ%2C Best hit);ORF_evidence=A2X3H5 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J033037F21;Expression=AK121583;TENOR=Os02t0281200-01;KEGG=Os02t0281200-01
Chr02	irgsp1_rep	five_prime_UTR	10444568	10444643	.	+	.	Parent=Os02t0281200-01
Chr02	irgsp1_rep	five_prime_UTR	10444772	10444868	.	+	.	Parent=Os02t0281200-01
Chr02	irgsp1_rep	five_prime_UTR	10445782	10445864	.	+	.	Parent=Os02t0281200-01
Chr02	irgsp1_rep	five_prime_UTR	10445977	10446046	.	+	.	Parent=Os02t0281200-01
Chr02	irgsp1_rep	five_prime_UTR	10446288	10446318	.	+	.	Parent=Os02t0281200-01
Chr02	irgsp1_rep	CDS	10446319	10449696	.	+	0	Parent=Os02t0281200-01
Chr02	irgsp1_rep	three_prime_UTR	10449697	10449733	.	+	.	Parent=Os02t0281200-01
Chr02	irgsp1_rep	three_prime_UTR	10450545	10450918	.	+	.	Parent=Os02t0281200-01
Chr02	irgsp1_rep	mRNA	10447151	10447750	.	+	.	ID=Os02t0281200-02;Name=Os02t0281200-02;Locus_id=Os02g0281200;Note=Similar to NBS-LRR protein (Fragment).;Transcript_evidence=AK063172 (DDBJ%2C Best hit);ORF_evidence=Q8LK99 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=001-112-A02;TENOR=Os02t0281200-02
Chr02	irgsp1_rep	five_prime_UTR	10447151	10447152	.	+	.	Parent=Os02t0281200-02
Chr02	irgsp1_rep	CDS	10447153	10447750	.	+	0	Parent=Os02t0281200-02
Chr02	irgsp1_rep	mRNA	10503049	10508541	.	+	.	ID=Os02t0282000-01;Name=Os02t0282000-01;Locus_id=Os02g0282000;Note=NB-ARC domain containing protein.;Transcript_evidence=AK241633 (DDBJ%2C Best hit);ORF_evidence=NP_001046563.1 (RefSeq);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J065188C01;TENOR=Os02t0282000-01;KEGG=Os02t0282000-01
Chr02	irgsp1_rep	five_prime_UTR	10503049	10503206	.	+	.	Parent=Os02t0282000-01
Chr02	irgsp1_rep	five_prime_UTR	10503327	10503415	.	+	.	Parent=Os02t0282000-01
Chr02	irgsp1_rep	five_prime_UTR	10504672	10504702	.	+	.	Parent=Os02t0282000-01
Chr02	irgsp1_rep	CDS	10504703	10508260	.	+	0	Parent=Os02t0282000-01
Chr02	irgsp1_rep	three_prime_UTR	10508261	10508541	.	+	.	Parent=Os02t0282000-01
Chr02	irgsp1_rep	mRNA	10509169	10512214	.	-	.	ID=Os02t0282100-01;Name=Os02t0282100-01;Locus_id=Os02g0282100;Note=Conserved hypothetical protein.;Transcript_evidence=AK058480 (DDBJ%2C Best hit);ORF_evidence=B8AFM3 (UniProt);NIAS_FLcDNA=001-016-C09;Expression=AK058480;TENOR=Os02t0282100-01;KEGG=Os02t0282100-01
Chr02	irgsp1_rep	five_prime_UTR	10511910	10512214	.	-	.	Parent=Os02t0282100-01
Chr02	irgsp1_rep	CDS	10511508	10511909	.	-	0	Parent=Os02t0282100-01
Chr02	irgsp1_rep	CDS	10509497	10509529	.	-	0	Parent=Os02t0282100-01
Chr02	irgsp1_rep	three_prime_UTR	10509169	10509496	.	-	.	Parent=Os02t0282100-01
Chr02	irgsp1_rep	mRNA	10525186	10526918	.	+	.	ID=Os02t0282301-01;Name=Os02t0282301-01;Locus_id=Os02g0282301;Note=Conserved hypothetical protein.;Transcript_evidence=AK241504 (DDBJ%2C Best hit);ORF_evidence=NP_001172899.1 (RefSeq);NIAS_FLcDNA=J065167O05;TENOR=Os02t0282301-01;KEGG=Os02t0282301-01
Chr02	irgsp1_rep	five_prime_UTR	10525186	10526169	.	+	.	Parent=Os02t0282301-01
Chr02	irgsp1_rep	CDS	10526170	10526622	.	+	0	Parent=Os02t0282301-01
Chr02	irgsp1_rep	three_prime_UTR	10526623	10526918	.	+	.	Parent=Os02t0282301-01
Chr02	irgsp1_rep	mRNA	10535635	10539146	.	+	.	ID=Os02t0282500-00;Name=Os02t0282500-00;Locus_id=Os02g0282500;Note=Disease resistance protein domain containing protein.;Transcript_evidence=AK361021 (DDBJ);ORF_evidence=NP_001046563.1 (RefSeq);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os02t0282500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	10535635	10537248	.	+	0	Parent=Os02t0282500-00
Chr02	irgsp1_rep	three_prime_UTR	10537249	10538056	.	+	.	Parent=Os02t0282500-00
Chr02	irgsp1_rep	three_prime_UTR	10538128	10538239	.	+	.	Parent=Os02t0282500-00
Chr02	irgsp1_rep	three_prime_UTR	10538707	10539146	.	+	.	Parent=Os02t0282500-00
Chr02	irgsp1_rep	mRNA	10540690	10543155	.	-	.	ID=Os02t0282600-01;Name=Os02t0282600-01;Locus_id=Os02g0282600;Note=Conserved hypothetical protein.;Transcript_evidence=AK070262 (DDBJ%2C Best hit);ORF_evidence=NP_001046564.1 (RefSeq);NIAS_FLcDNA=J023041L18;TENOR=Os02t0282600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	10542246	10543155	.	-	.	Parent=Os02t0282600-01
Chr02	irgsp1_rep	CDS	10541934	10542245	.	-	0	Parent=Os02t0282600-01
Chr02	irgsp1_rep	three_prime_UTR	10540690	10541933	.	-	.	Parent=Os02t0282600-01
Chr02	irgsp1_rep	mRNA	10552438	10558881	.	-	.	ID=Os02t0282900-01;Name=Os02t0282900-01;Locus_id=Os02g0282900;CGSNL Gene Symbol=ABCE1;CGSNL Gene Name=ABC TRANSPORTER E FAMILY MEMBER 1;Oryzabase Gene Symbol Synonym(s)=OsABCE1%2C OsABCE1_1%2C OsABCE1_2;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCE subgroup member 1;Note=Similar to 68 kDa protein HP68.;Transcript_evidence=AK121560 (DDBJ%2C Best hit);ORF_evidence=Q8L8I4 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=4Fe-4S binding domain (IPR001450),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),RNase L inhibitor RLI%2C possible metal-binding domain (IPR007209),ABC transporter%2C ABCE (IPR013283),ABC transporter%2C conserved site (IPR017871),4Fe-4S ferredoxin%2C iron-sulpur binding domain (IPR017896),4Fe-4S ferredoxin%2C iron-sulphur binding%2C conserved site (IPR017900);NIAS_FLcDNA=J033034C12;Oryzabase=11973;Expression=AK121560;TENOR=Os02t0282900-01;KEGG=Os02t0282900-01
Chr02	irgsp1_rep	five_prime_UTR	10558639	10558881	.	-	.	Parent=Os02t0282900-01
Chr02	irgsp1_rep	CDS	10558524	10558638	.	-	0	Parent=Os02t0282900-01
Chr02	irgsp1_rep	CDS	10557089	10557174	.	-	2	Parent=Os02t0282900-01
Chr02	irgsp1_rep	CDS	10556893	10556990	.	-	0	Parent=Os02t0282900-01
Chr02	irgsp1_rep	CDS	10556591	10556708	.	-	1	Parent=Os02t0282900-01
Chr02	irgsp1_rep	CDS	10556417	10556506	.	-	0	Parent=Os02t0282900-01
Chr02	irgsp1_rep	CDS	10555677	10555981	.	-	0	Parent=Os02t0282900-01
Chr02	irgsp1_rep	CDS	10555395	10555590	.	-	1	Parent=Os02t0282900-01
Chr02	irgsp1_rep	CDS	10555133	10555315	.	-	0	Parent=Os02t0282900-01
Chr02	irgsp1_rep	CDS	10554768	10555037	.	-	0	Parent=Os02t0282900-01
Chr02	irgsp1_rep	CDS	10553585	10553830	.	-	0	Parent=Os02t0282900-01
Chr02	irgsp1_rep	CDS	10553249	10553368	.	-	0	Parent=Os02t0282900-01
Chr02	irgsp1_rep	three_prime_UTR	10553248	10553248	.	-	.	Parent=Os02t0282900-01
Chr02	irgsp1_rep	three_prime_UTR	10552850	10553159	.	-	.	Parent=Os02t0282900-01
Chr02	irgsp1_rep	three_prime_UTR	10552438	10552774	.	-	.	Parent=Os02t0282900-01
Chr02	irgsp1_rep	mRNA	10634660	10641052	.	+	.	ID=Os02t0283800-01;Name=Os02t0283800-01;Locus_id=Os02g0283800;RAP-DB Gene Symbol Synonym(s)=TMS10%2C OsSERK4;RAP-DB Gene Name Synonym(s)=Thermo-Sensitive Genic Male Sterile 10%2C  somatic embryogenesis receptor kinase 4;CGSNL Gene Symbol=TMS10;CGSNL Gene Name=THERMOSENSITIVE MALE STERILITY 10;Oryzabase Gene Symbol Synonym(s)=OsSERK4%2C OsSERL9%2C OsSERK2%2C OsBAK1-5%2C OsTMS10%2C SERK4%2C SERL9%2C SERK2%2C BAK1-5%2C OsBAK1%2C BAK1;Oryzabase Gene Name Synonym(s)=thermosensitive male sterility10%2C thermosensitive male sterility 10%2C Thermo-Sensitive Genic Male Sterile 10%2C somatic embryogenesis receptor-like kinase 4%2C somatic embryogenesis receptor kinase 4%2C SERK-like gene 9%2C bri1-associated receptor kinase 1 (BAK1) homologue 5;Note=Leucine-rich repeat receptor-like kinase%2C Maintenance of the tapetal cell layer and microspore/pollen viability%2C Control of male fertility%2C Regulation of plant growth through the brassinosteroid (BR) signaling pathway;Transcript_evidence=AK102120;ORF_evidence=Q6K4T4;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Leucine-rich repeat domain superfamily (IPR032675),CytoChrome c1%2C transmembrane anchor%2C C-terminal (IPR021157),Protein kinase-like domain superfamily (IPR011009),Leucine-rich repeat-containing N-terminal%2C plant-type (IPR013210),Protein kinase domain (IPR000719),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J033084N08;Manual Curation=December 6%2C 2017;Literature_PMID=29087306,19754838;Oryzabase=13023;Expression=AK102120;TENOR=Os02t0283800-01;KEGG=Os02t0283800-01;Subcellular location=plasma membrane (GO:0005886)
Chr02	irgsp1_rep	five_prime_UTR	10634660	10634893	.	+	.	Parent=Os02t0283800-01
Chr02	irgsp1_rep	CDS	10634894	10634966	.	+	0	Parent=Os02t0283800-01
Chr02	irgsp1_rep	CDS	10636900	10637032	.	+	2	Parent=Os02t0283800-01
Chr02	irgsp1_rep	CDS	10637146	10637217	.	+	1	Parent=Os02t0283800-01
Chr02	irgsp1_rep	CDS	10637930	10638073	.	+	1	Parent=Os02t0283800-01
Chr02	irgsp1_rep	CDS	10638173	10638244	.	+	1	Parent=Os02t0283800-01
Chr02	irgsp1_rep	CDS	10638353	10638418	.	+	1	Parent=Os02t0283800-01
Chr02	irgsp1_rep	CDS	10638505	10638575	.	+	1	Parent=Os02t0283800-01
Chr02	irgsp1_rep	CDS	10638698	10638838	.	+	2	Parent=Os02t0283800-01
Chr02	irgsp1_rep	CDS	10639249	10639590	.	+	2	Parent=Os02t0283800-01
Chr02	irgsp1_rep	CDS	10639891	10640285	.	+	2	Parent=Os02t0283800-01
Chr02	irgsp1_rep	CDS	10640383	10640697	.	+	0	Parent=Os02t0283800-01
Chr02	irgsp1_rep	three_prime_UTR	10640698	10641052	.	+	.	Parent=Os02t0283800-01
Chr02	irgsp1_rep	mRNA	10677732	10679056	.	+	.	ID=Os02t0284300-00;Name=Os02t0284300-00;Locus_id=Os02g0284300;Note=Similar to predicted protein.;Transcript_evidence=BT060544 (DDBJ);ORF_evidence=Q9ATX1 (UniProt);GO=Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009);TENOR=Os02t0284300-00;KEGG=Os02t0284300-00
Chr02	irgsp1_rep	five_prime_UTR	10677732	10677894	.	+	.	Parent=Os02t0284300-00
Chr02	irgsp1_rep	CDS	10677895	10678011	.	+	0	Parent=Os02t0284300-00
Chr02	irgsp1_rep	CDS	10678193	10679056	.	+	0	Parent=Os02t0284300-00
Chr02	irgsp1_rep	mRNA	10693427	10696752	.	+	.	ID=Os02t0284500-01;Name=Os02t0284500-01;Locus_id=Os02g0284500;Note=FAR1 DNA binding domain domain containing protein.;Transcript_evidence=AK064078 (DDBJ%2C Best hit);ORF_evidence=B9F516 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=FAR1 DNA binding domain (IPR004330),Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);NIAS_FLcDNA=002-100-A08;TENOR=Os02t0284500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	10693427	10693933	.	+	0	Parent=Os02t0284500-01
Chr02	irgsp1_rep	CDS	10694030	10694125	.	+	0	Parent=Os02t0284500-01
Chr02	irgsp1_rep	CDS	10694209	10696449	.	+	0	Parent=Os02t0284500-01
Chr02	irgsp1_rep	three_prime_UTR	10696450	10696752	.	+	.	Parent=Os02t0284500-01
Chr02	irgsp1_rep	mRNA	10694206	10696396	.	-	.	ID=Os02t0284550-00;Name=Os02t0284550-00;Locus_id=Os02g0284550;Note=Hypothetical protein.;Transcript_evidence=tplb0057m08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0284550-00
Chr02	irgsp1_rep	five_prime_UTR	10695366	10696396	.	-	.	Parent=Os02t0284550-00
Chr02	irgsp1_rep	CDS	10695147	10695365	.	-	0	Parent=Os02t0284550-00
Chr02	irgsp1_rep	three_prime_UTR	10694206	10695146	.	-	.	Parent=Os02t0284550-00
Chr02	irgsp1_rep	mRNA	10700829	10701516	.	-	.	ID=Os02t0284600-01;Name=Os02t0284600-01;Locus_id=Os02g0284600;Oryzabase Gene Symbol Synonym(s)=OsRPL27.3%2C RPL27.3;Oryzabase Gene Name Synonym(s)=ribosomal protein L27.3%2C ribosomal protein large subunit 27.3;Note=Similar to 60S ribosomal protein L27.;Transcript_evidence=AK121593 (DDBJ%2C Best hit);ORF_evidence=A2X3I0 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L27e (IPR001141),KOW (IPR005824),Translation protein SH3-like%2C subgroup (IPR014722),Ribosomal protein L27e%2C conserved site (IPR018262);NIAS_FLcDNA=J033038C19;Oryzabase=22199;Expression=AK121593;TENOR=Os02t0284600-01;KEGG=Os02t0284600-01
Chr02	irgsp1_rep	five_prime_UTR	10701408	10701516	.	-	.	Parent=Os02t0284600-01
Chr02	irgsp1_rep	CDS	10700994	10701407	.	-	0	Parent=Os02t0284600-01
Chr02	irgsp1_rep	three_prime_UTR	10700829	10700993	.	-	.	Parent=Os02t0284600-01
Chr02	irgsp1_rep	mRNA	10704318	10705004	.	-	.	ID=Os02t0284800-01;Name=Os02t0284800-01;Locus_id=Os02g0284800;Note=Hypothetical protein.;Transcript_evidence=AK109169 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=002-155-H04;Expression=AK109169;TENOR=Os02t0284800-01;KEGG=Os02t0284800-01
Chr02	irgsp1_rep	five_prime_UTR	10704940	10705004	.	-	.	Parent=Os02t0284800-01
Chr02	irgsp1_rep	CDS	10704553	10704939	.	-	0	Parent=Os02t0284800-01
Chr02	irgsp1_rep	three_prime_UTR	10704318	10704552	.	-	.	Parent=Os02t0284800-01
Chr02	irgsp1_rep	mRNA	10715073	10716741	.	-	.	ID=Os02t0285300-01;Name=Os02t0285300-01;Locus_id=Os02g0285300;Oryzabase Gene Symbol Synonym(s)=OsDREPP2%2C DREPP2;Oryzabase Gene Name Synonym(s)=developmentally regulated plasma membrane polypeptide 2;Note=DREPP plasma membrane polypeptide family protein.;Transcript_evidence=AK058613 (DDBJ%2C Best hit);ORF_evidence=B6TK17 (UniProt);InterPro=DREPP plasma membrane polypeptide (IPR008469);NIAS_FLcDNA=001-018-A12;Oryzabase=19298;Expression=AK058613;TENOR=Os02t0285300-01;KEGG=Os02t0285300-01
Chr02	irgsp1_rep	five_prime_UTR	10716630	10716741	.	-	.	Parent=Os02t0285300-01
Chr02	irgsp1_rep	CDS	10716516	10716629	.	-	0	Parent=Os02t0285300-01
Chr02	irgsp1_rep	CDS	10716329	10716418	.	-	0	Parent=Os02t0285300-01
Chr02	irgsp1_rep	CDS	10715849	10715936	.	-	0	Parent=Os02t0285300-01
Chr02	irgsp1_rep	CDS	10715342	10715748	.	-	2	Parent=Os02t0285300-01
Chr02	irgsp1_rep	three_prime_UTR	10715073	10715341	.	-	.	Parent=Os02t0285300-01
Chr02	irgsp1_rep	mRNA	10725543	10729638	.	-	.	ID=Os02t0285700-01;Name=Os02t0285700-01;Locus_id=Os02g0285700;Note=Similar to predicted protein.;Transcript_evidence=AK288720 (DDBJ%2C Best hit);ORF_evidence=Q41297 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J090062N14;TENOR=Os02t0285700-01;KEGG=Os02t0285700-01 (EC:2.7.11.1)
Chr02	irgsp1_rep	five_prime_UTR	10728038	10729638	.	-	.	Parent=Os02t0285700-01
Chr02	irgsp1_rep	CDS	10727099	10728037	.	-	0	Parent=Os02t0285700-01
Chr02	irgsp1_rep	three_prime_UTR	10725543	10727098	.	-	.	Parent=Os02t0285700-01
Chr02	irgsp1_rep	mRNA	10739333	10739721	.	-	.	ID=Os02t0285775-00;Name=Os02t0285775-00;Locus_id=Os02g0285775;Note=Non-protein coding transcript.;Transcript_evidence=EU948599 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0285775-00
Chr02	irgsp1_rep	exon	10739333	10739721	.	-	.	Parent=Os02t0285775-00
Chr02	irgsp1_rep	mRNA	10739451	10747067	.	+	.	ID=Os02t0285800-01;Name=Os02t0285800-01;Locus_id=Os02g0285800;Note=Similar to GTP-binding protein typA (Tyrosine phosphorylated protein A).;Transcript_evidence=AK072177 (DDBJ%2C Best hit),AK099035 (DDBJ%2C Best hit);ORF_evidence=E5GBY4 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Translation elongation factor EFG/EF2%2C C-terminal (IPR000640),Protein synthesis factor%2C GTP-binding (IPR000795),Translation elongation factor EFTu/EF1A%2C domain 2 (IPR004161),Small GTP-binding protein domain (IPR005225),GTP-binding protein TypA (IPR006298),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Elongation factor G/III/V (IPR009022);NIAS_FLcDNA=J013139G12,J013135J07;TENOR=Os02t0285800-01
Chr02	irgsp1_rep	five_prime_UTR	10739451	10739503	.	+	.	Parent=Os02t0285800-01
Chr02	irgsp1_rep	CDS	10739504	10739699	.	+	0	Parent=Os02t0285800-01
Chr02	irgsp1_rep	CDS	10740470	10740579	.	+	2	Parent=Os02t0285800-01
Chr02	irgsp1_rep	CDS	10740793	10740996	.	+	0	Parent=Os02t0285800-01
Chr02	irgsp1_rep	CDS	10741302	10741478	.	+	0	Parent=Os02t0285800-01
Chr02	irgsp1_rep	CDS	10741561	10741713	.	+	0	Parent=Os02t0285800-01
Chr02	irgsp1_rep	CDS	10742437	10742526	.	+	0	Parent=Os02t0285800-01
Chr02	irgsp1_rep	CDS	10742841	10742975	.	+	0	Parent=Os02t0285800-01
Chr02	irgsp1_rep	CDS	10743071	10743187	.	+	0	Parent=Os02t0285800-01
Chr02	irgsp1_rep	CDS	10743783	10743934	.	+	0	Parent=Os02t0285800-01
Chr02	irgsp1_rep	CDS	10744018	10744102	.	+	1	Parent=Os02t0285800-01
Chr02	irgsp1_rep	CDS	10744499	10744593	.	+	0	Parent=Os02t0285800-01
Chr02	irgsp1_rep	CDS	10745113	10745278	.	+	1	Parent=Os02t0285800-01
Chr02	irgsp1_rep	CDS	10745361	10745556	.	+	0	Parent=Os02t0285800-01
Chr02	irgsp1_rep	CDS	10746564	10746697	.	+	2	Parent=Os02t0285800-01
Chr02	irgsp1_rep	three_prime_UTR	10746698	10747067	.	+	.	Parent=Os02t0285800-01
Chr02	irgsp1_rep	mRNA	10741427	10747004	.	+	.	ID=Os02t0285800-02;Name=Os02t0285800-02;Locus_id=Os02g0285800;Note=Similar to predicted protein.;Transcript_evidence=AK060415 (DDBJ%2C Best hit);ORF_evidence=E5GBY4 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=Translation elongation factor EFG/EF2%2C C-terminal (IPR000640),Translation elongation factor EFTu/EF1A%2C domain 2 (IPR004161),GTP-binding protein TypA (IPR006298),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Elongation factor G/III/V (IPR009022);NIAS_FLcDNA=001-010-E11;Expression=AK060415;TENOR=Os02t0285800-02;KEGG=Os02t0285800-02
Chr02	irgsp1_rep	five_prime_UTR	10741427	10741427	.	+	.	Parent=Os02t0285800-02
Chr02	irgsp1_rep	CDS	10741428	10741478	.	+	0	Parent=Os02t0285800-02
Chr02	irgsp1_rep	CDS	10741561	10741713	.	+	0	Parent=Os02t0285800-02
Chr02	irgsp1_rep	CDS	10742437	10742526	.	+	0	Parent=Os02t0285800-02
Chr02	irgsp1_rep	CDS	10742841	10742975	.	+	0	Parent=Os02t0285800-02
Chr02	irgsp1_rep	CDS	10743071	10743187	.	+	0	Parent=Os02t0285800-02
Chr02	irgsp1_rep	CDS	10743783	10743934	.	+	0	Parent=Os02t0285800-02
Chr02	irgsp1_rep	CDS	10744018	10744102	.	+	1	Parent=Os02t0285800-02
Chr02	irgsp1_rep	CDS	10744499	10744593	.	+	0	Parent=Os02t0285800-02
Chr02	irgsp1_rep	CDS	10745113	10745278	.	+	1	Parent=Os02t0285800-02
Chr02	irgsp1_rep	CDS	10745361	10745556	.	+	0	Parent=Os02t0285800-02
Chr02	irgsp1_rep	CDS	10746564	10746697	.	+	2	Parent=Os02t0285800-02
Chr02	irgsp1_rep	three_prime_UTR	10746698	10747004	.	+	.	Parent=Os02t0285800-02
Chr02	irgsp1_rep	mRNA	10747495	10749006	.	-	.	ID=Os02t0285900-00;Name=Os02t0285900-00;Locus_id=Os02g0285900;CGSNL Gene Symbol=NAC44;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 44;Oryzabase Gene Symbol Synonym(s)=ONAC044%2C ONAC44;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 044%2C NAC domain-containing protein 44;Note=No apical meristem (NAM) protein domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001172901.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);Oryzabase=15834;TENOR=Os02t0285900-00;KEGG=Os02t0285900-00
Chr02	irgsp1_rep	CDS	10747495	10749006	.	-	0	Parent=Os02t0285900-00
Chr02	irgsp1_rep	mRNA	10758967	10762460	.	+	.	ID=Os02t0286200-01;Name=Os02t0286200-01;Locus_id=Os02g0286200;Note=Lipase%2C class 3 family protein.;Transcript_evidence=AK058880 (DDBJ%2C Best hit);ORF_evidence=NP_001149280.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921);NIAS_FLcDNA=001-007-B05;Expression=AK058880;TENOR=Os02t0286200-01;KEGG=Os02t0286200-01
Chr02	irgsp1_rep	five_prime_UTR	10758967	10759068	.	+	.	Parent=Os02t0286200-01
Chr02	irgsp1_rep	five_prime_UTR	10760569	10760627	.	+	.	Parent=Os02t0286200-01
Chr02	irgsp1_rep	CDS	10760628	10760689	.	+	0	Parent=Os02t0286200-01
Chr02	irgsp1_rep	CDS	10761321	10762308	.	+	1	Parent=Os02t0286200-01
Chr02	irgsp1_rep	three_prime_UTR	10762309	10762460	.	+	.	Parent=Os02t0286200-01
Chr02	irgsp1_rep	mRNA	10764855	10766260	.	-	.	ID=Os02t0286350-00;Name=Os02t0286350-00;Locus_id=Os02g0286350;Note=Similar to Non-specific lipid-transfer protein.;Transcript_evidence=AK333128 (DDBJ);ORF_evidence=A2YNW1 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);TENOR=Os02t0286350-00
Chr02	irgsp1_rep	five_prime_UTR	10766033	10766260	.	-	.	Parent=Os02t0286350-00
Chr02	irgsp1_rep	five_prime_UTR	10765173	10765212	.	-	.	Parent=Os02t0286350-00
Chr02	irgsp1_rep	CDS	10764855	10765172	.	-	0	Parent=Os02t0286350-00
Chr02	irgsp1_rep	mRNA	10766482	10767402	.	+	.	ID=Os02t0286500-00;Name=Os02t0286500-00;Locus_id=Os02g0286500;Note=Similar to AT hook motif family protein%2C expressed.;Transcript_evidence=FP097225 (DDBJ);ORF_evidence=Q10E13 (UniProt);TENOR=Os02t0286500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	10766482	10766485	.	+	.	Parent=Os02t0286500-00
Chr02	irgsp1_rep	CDS	10766486	10766756	.	+	0	Parent=Os02t0286500-00
Chr02	irgsp1_rep	CDS	10766839	10766912	.	+	2	Parent=Os02t0286500-00
Chr02	irgsp1_rep	CDS	10767049	10767402	.	+	0	Parent=Os02t0286500-00
Chr02	irgsp1_rep	mRNA	10772392	10776515	.	-	.	ID=Os02t0286700-00;Name=Os02t0286700-00;Locus_id=Os02g0286700;Note=Similar to Chlorophyllase (Fragment).;Transcript_evidence=BT066029 (DDBJ);ORF_evidence=Q6KA54 (UniProt);GO=Biological Process: chlorophyll catabolic process (GO:0015996),Molecular Function: chlorophyllase activity (GO:0047746);InterPro=Chlorophyllase (IPR010821);Oryzabase=14959;TENOR=Os02t0286700-00;KEGG=Os02t0286700-00
Chr02	irgsp1_rep	five_prime_UTR	10776303	10776515	.	-	.	Parent=Os02t0286700-00
Chr02	irgsp1_rep	five_prime_UTR	10774732	10775167	.	-	.	Parent=Os02t0286700-00
Chr02	irgsp1_rep	five_prime_UTR	10772807	10772875	.	-	.	Parent=Os02t0286700-00
Chr02	irgsp1_rep	CDS	10772435	10772806	.	-	0	Parent=Os02t0286700-00
Chr02	irgsp1_rep	three_prime_UTR	10772392	10772434	.	-	.	Parent=Os02t0286700-00
Chr02	irgsp1_rep	mRNA	10778463	10780758	.	-	.	ID=Os02t0286850-00;Name=Os02t0286850-00;Locus_id=Os02g0286850;Note=Similar to Stripe rust resistance protein Yr10.;Transcript_evidence=tplb0036i24 (Wheat FLcDNA);ORF_evidence=Q9FR64 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os02t0286850-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	10780191	10780758	.	-	.	Parent=Os02t0286850-00
Chr02	irgsp1_rep	CDS	10779910	10780190	.	-	0	Parent=Os02t0286850-00
Chr02	irgsp1_rep	CDS	10778463	10779363	.	-	1	Parent=Os02t0286850-00
Chr02	irgsp1_rep	mRNA	10787293	10789508	.	+	.	ID=Os02t0286891-01;Name=Os02t0286891-01;Locus_id=Os02g0286891;Note=Similar to OSIGBa0161P06.1 protein.;Transcript_evidence=AK241594 (DDBJ%2C Best hit);ORF_evidence=Q01LT1 (UniProt);NIAS_FLcDNA=J065183C07;TENOR=Os02t0286891-01
Chr02	irgsp1_rep	five_prime_UTR	10787293	10787748	.	+	.	Parent=Os02t0286891-01
Chr02	irgsp1_rep	five_prime_UTR	10788080	10788728	.	+	.	Parent=Os02t0286891-01
Chr02	irgsp1_rep	CDS	10788729	10788905	.	+	0	Parent=Os02t0286891-01
Chr02	irgsp1_rep	three_prime_UTR	10788906	10789508	.	+	.	Parent=Os02t0286891-01
Chr02	irgsp1_rep	mRNA	10807538	10810831	.	+	.	ID=Os02t0286933-00;Name=Os02t0286933-00;Locus_id=Os02g0286933;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001172902.1 (RefSeq);TENOR=Os02t0286933-00
Chr02	irgsp1_rep	CDS	10807538	10807715	.	+	0	Parent=Os02t0286933-00
Chr02	irgsp1_rep	CDS	10810674	10810831	.	+	2	Parent=Os02t0286933-00
Chr02	irgsp1_rep	mRNA	10822643	10825665	.	-	.	ID=Os02t0287000-01;Name=Os02t0287000-01;Locus_id=Os02g0287000;Oryzabase Gene Symbol Synonym(s)=RPS3a;Oryzabase Gene Name Synonym(s)=S-phase sepcific Cyc07 protein%2C ribosomal protein S3a%2C ribosomal protein small subunit 3a;Note=Similar to 40S ribosomal protein S3a (CYC07 protein).;Transcript_evidence=AK059647 (DDBJ%2C Best hit);ORF_evidence=NP_001152574.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S3Ae (IPR001593),Ribosomal protein S3Ae%2C conserved site (IPR018281);NIAS_FLcDNA=001-031-C03;Oryzabase=17703;Expression=AK059647;TENOR=Os02t0287000-01;KEGG=Os02t0287000-01
Chr02	irgsp1_rep	five_prime_UTR	10825595	10825665	.	-	.	Parent=Os02t0287000-01
Chr02	irgsp1_rep	CDS	10825536	10825594	.	-	0	Parent=Os02t0287000-01
Chr02	irgsp1_rep	CDS	10825298	10825403	.	-	1	Parent=Os02t0287000-01
Chr02	irgsp1_rep	CDS	10824548	10824685	.	-	0	Parent=Os02t0287000-01
Chr02	irgsp1_rep	CDS	10824267	10824452	.	-	0	Parent=Os02t0287000-01
Chr02	irgsp1_rep	CDS	10823958	10824158	.	-	0	Parent=Os02t0287000-01
Chr02	irgsp1_rep	CDS	10822957	10823052	.	-	0	Parent=Os02t0287000-01
Chr02	irgsp1_rep	three_prime_UTR	10822643	10822956	.	-	.	Parent=Os02t0287000-01
Chr02	irgsp1_rep	mRNA	10822715	10825627	.	-	.	ID=Os02t0287000-02;Name=Os02t0287000-02;Locus_id=Os02g0287000;Oryzabase Gene Symbol Synonym(s)=RPS3a;Oryzabase Gene Name Synonym(s)=S-phase sepcific Cyc07 protein%2C ribosomal protein S3a%2C ribosomal protein small subunit 3a;Note=Ribosomal protein S3Ae domain containing protein.;Transcript_evidence=AK099131 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S3Ae (IPR001593),Ribosomal protein S3Ae%2C conserved site (IPR018281);NIAS_FLcDNA=J023048M05;Oryzabase=17703;TENOR=Os02t0287000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	10825536	10825627	.	-	0	Parent=Os02t0287000-02
Chr02	irgsp1_rep	CDS	10825298	10825403	.	-	1	Parent=Os02t0287000-02
Chr02	irgsp1_rep	CDS	10824548	10824685	.	-	0	Parent=Os02t0287000-02
Chr02	irgsp1_rep	CDS	10824267	10824452	.	-	0	Parent=Os02t0287000-02
Chr02	irgsp1_rep	CDS	10823958	10824158	.	-	0	Parent=Os02t0287000-02
Chr02	irgsp1_rep	CDS	10822957	10823052	.	-	0	Parent=Os02t0287000-02
Chr02	irgsp1_rep	three_prime_UTR	10822715	10822956	.	-	.	Parent=Os02t0287000-02
Chr02	irgsp1_rep	mRNA	10853024	10853919	.	-	.	ID=Os02t0287700-00;Name=Os02t0287700-00;Locus_id=Os02g0287700;Note=Hypothetical gene.;Transcript_evidence=CT835490 (DDBJ%2C Best hit);ORF_evidence=B9FTC5 (UniProt);TENOR=Os02t0287700-00;KEGG=Os02t0287700-00
Chr02	irgsp1_rep	five_prime_UTR	10853913	10853919	.	-	.	Parent=Os02t0287700-00
Chr02	irgsp1_rep	CDS	10853502	10853912	.	-	0	Parent=Os02t0287700-00
Chr02	irgsp1_rep	three_prime_UTR	10853498	10853501	.	-	.	Parent=Os02t0287700-00
Chr02	irgsp1_rep	three_prime_UTR	10853364	10853419	.	-	.	Parent=Os02t0287700-00
Chr02	irgsp1_rep	three_prime_UTR	10853024	10853271	.	-	.	Parent=Os02t0287700-00
Chr02	irgsp1_rep	mRNA	10854309	10855575	.	+	.	ID=Os02t0287800-00;Name=Os02t0287800-00;Locus_id=Os02g0287800;Oryzabase Gene Symbol Synonym(s)=Os_F0478;Note=F-box domain%2C Skp2-like domain containing protein.;Transcript_evidence=EU959887 (DDBJ);ORF_evidence=A2X3J7 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);Oryzabase=17478;TENOR=Os02t0287800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	10854309	10854680	.	+	0	Parent=Os02t0287800-00
Chr02	irgsp1_rep	three_prime_UTR	10854681	10854967	.	+	.	Parent=Os02t0287800-00
Chr02	irgsp1_rep	three_prime_UTR	10855022	10855575	.	+	.	Parent=Os02t0287800-00
Chr02	irgsp1_rep	mRNA	10857586	10859012	.	-	.	ID=Os02t0287900-01;Name=Os02t0287900-01;Locus_id=Os02g0287900;Oryzabase Gene Symbol Synonym(s)=OsFbox080%2C OsFbox80%2C Os_F0533;Oryzabase Gene Name Synonym(s)=F-box protein 80;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK106386 (DDBJ%2C Best hit);ORF_evidence=Q6K8B2 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-102-E06;Oryzabase=16875;Expression=AK106386;TENOR=Os02t0287900-01;KEGG=Os02t0287900-01
Chr02	irgsp1_rep	CDS	10857744	10859012	.	-	0	Parent=Os02t0287900-01
Chr02	irgsp1_rep	three_prime_UTR	10857586	10857743	.	-	.	Parent=Os02t0287900-01
Chr02	irgsp1_rep	mRNA	10858501	10859032	.	+	.	ID=Os02t0287950-00;Name=Os02t0287950-00;Locus_id=Os02g0287950;Note=Non-protein coding transcript.;Transcript_evidence=EU950476 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0287950-00
Chr02	irgsp1_rep	exon	10858501	10859032	.	+	.	Parent=Os02t0287950-00
Chr02	irgsp1_rep	mRNA	10861422	10862862	.	-	.	ID=Os02t0288000-01;Name=Os02t0288000-01;Locus_id=Os02g0288000;Oryzabase Gene Symbol Synonym(s)=OsFbox081%2C OsFbox81%2C Os_F0375;Oryzabase Gene Name Synonym(s)=F-box protein 81;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK109705 (DDBJ%2C Best hit);ORF_evidence=A2X3J9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-145-G04;Oryzabase=16876;Expression=AK109705;TENOR=Os02t0288000-01;KEGG=Os02t0288000-01
Chr02	irgsp1_rep	five_prime_UTR	10862834	10862862	.	-	.	Parent=Os02t0288000-01
Chr02	irgsp1_rep	CDS	10861595	10862833	.	-	0	Parent=Os02t0288000-01
Chr02	irgsp1_rep	three_prime_UTR	10861422	10861594	.	-	.	Parent=Os02t0288000-01
Chr02	irgsp1_rep	mRNA	10864069	10867222	.	-	.	ID=Os02t0288100-01;Name=Os02t0288100-01;Locus_id=Os02g0288100;CGSNL Gene Symbol=PME8;CGSNL Gene Name=PECTIN METHYLESTERASE 8;Oryzabase Gene Symbol Synonym(s)=OsPME8;Oryzabase Gene Name Synonym(s)=pectin methylesterase 8;Note=Similar to Pectinesterase (EC 3.1.1.11) (Fragment).;Transcript_evidence=AK107019 (DDBJ%2C Best hit);ORF_evidence=A2X3K0 (UniProt);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectinesterase inhibitor (IPR006501),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),Pectinesterase%2C active site (IPR018040);NIAS_FLcDNA=002-120-H06;Oryzabase=13172;Expression=AK107019;TENOR=Os02t0288100-01;KEGG=Os02t0288100-01 (EC:3.1.1.11)
Chr02	irgsp1_rep	five_prime_UTR	10867172	10867222	.	-	.	Parent=Os02t0288100-01
Chr02	irgsp1_rep	CDS	10866220	10867171	.	-	0	Parent=Os02t0288100-01
Chr02	irgsp1_rep	CDS	10864150	10864862	.	-	2	Parent=Os02t0288100-01
Chr02	irgsp1_rep	three_prime_UTR	10864069	10864149	.	-	.	Parent=Os02t0288100-01
Chr02	irgsp1_rep	mRNA	10870290	10874506	.	+	.	ID=Os02t0288200-01;Name=Os02t0288200-01;Locus_id=Os02g0288200;Oryzabase Gene Name Synonym(s)=CentO-binding protein;Note=Protein of unknown function DUF573 domain containing protein.;Transcript_evidence=AK102886 (DDBJ%2C Best hit);ORF_evidence=B8AFP0 (UniProt);InterPro=Protein of unknown function DUF573 (IPR007592);NIAS_FLcDNA=J033112K05;Oryzabase=12261;Expression=AK102886;TENOR=Os02t0288200-01;KEGG=Os02t0288200-01
Chr02	irgsp1_rep	five_prime_UTR	10870290	10870383	.	+	.	Parent=Os02t0288200-01
Chr02	irgsp1_rep	CDS	10870384	10872120	.	+	0	Parent=Os02t0288200-01
Chr02	irgsp1_rep	three_prime_UTR	10872121	10872151	.	+	.	Parent=Os02t0288200-01
Chr02	irgsp1_rep	three_prime_UTR	10874173	10874506	.	+	.	Parent=Os02t0288200-01
Chr02	irgsp1_rep	mRNA	10871106	10874413	.	+	.	ID=Os02t0288200-02;Name=Os02t0288200-02;Locus_id=Os02g0288200;Oryzabase Gene Name Synonym(s)=CentO-binding protein;Note=Hypothetical conserved gene.;Transcript_evidence=AK073147 (DDBJ%2C Best hit);ORF_evidence=B8AFP0 (UniProt);NIAS_FLcDNA=J033022M16;Oryzabase=12261;Expression=AK073147;TENOR=Os02t0288200-02;KEGG=Os02t0288200-02
Chr02	irgsp1_rep	five_prime_UTR	10871106	10871106	.	+	.	Parent=Os02t0288200-02
Chr02	irgsp1_rep	CDS	10871107	10872120	.	+	0	Parent=Os02t0288200-02
Chr02	irgsp1_rep	three_prime_UTR	10872121	10872151	.	+	.	Parent=Os02t0288200-02
Chr02	irgsp1_rep	three_prime_UTR	10874173	10874413	.	+	.	Parent=Os02t0288200-02
Chr02	irgsp1_rep	mRNA	10880647	10886393	.	-	.	ID=Os02t0288400-00;Name=Os02t0288400-00;Locus_id=Os02g0288400;CGSNL Gene Symbol=MRP5;CGSNL Gene Name=MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 5;Oryzabase Gene Symbol Synonym(s)=OsABCC5%2C OsMRP5;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCC subgroup member 5%2C multidrug resistance-associated protein 5;Note=Similar to MRP-like ABC transporter.;Transcript_evidence=tplb0017i16 (Wheat FLcDNA);ORF_evidence=Q8GU61 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);Oryzabase=11956;TENOR=Os02t0288400-00;KEGG=Os02t0288400-00
Chr02	irgsp1_rep	five_prime_UTR	10886393	10886393	.	-	.	Parent=Os02t0288400-00
Chr02	irgsp1_rep	CDS	10884638	10886392	.	-	0	Parent=Os02t0288400-00
Chr02	irgsp1_rep	CDS	10884097	10884183	.	-	0	Parent=Os02t0288400-00
Chr02	irgsp1_rep	CDS	10883379	10884011	.	-	0	Parent=Os02t0288400-00
Chr02	irgsp1_rep	CDS	10883095	10883259	.	-	0	Parent=Os02t0288400-00
Chr02	irgsp1_rep	CDS	10882319	10882613	.	-	0	Parent=Os02t0288400-00
Chr02	irgsp1_rep	CDS	10882000	10882214	.	-	2	Parent=Os02t0288400-00
Chr02	irgsp1_rep	CDS	10881328	10881633	.	-	0	Parent=Os02t0288400-00
Chr02	irgsp1_rep	CDS	10881176	10881239	.	-	0	Parent=Os02t0288400-00
Chr02	irgsp1_rep	CDS	10880848	10881087	.	-	2	Parent=Os02t0288400-00
Chr02	irgsp1_rep	CDS	10880663	10880763	.	-	2	Parent=Os02t0288400-00
Chr02	irgsp1_rep	three_prime_UTR	10880647	10880662	.	-	.	Parent=Os02t0288400-00
Chr02	irgsp1_rep	mRNA	10897250	10897969	.	-	.	ID=Os02t0288600-01;Name=Os02t0288600-01;Locus_id=Os02g0288600;Oryzabase Gene Symbol Synonym(s)=OsBURP04%2C OsBURP4;Oryzabase Gene Name Synonym(s)=BURP domain-containing protein 4;Note=Similar to BURP domain-containing protein 4.;Transcript_evidence=AK288416 (DDBJ%2C Best hit);ORF_evidence=Q0E1Z0 (UniProt);InterPro=BURP (IPR004873);NIAS_FLcDNA=J090031H12;Oryzabase=15043;TENOR=Os02t0288600-01;KEGG=Os02t0288600-01
Chr02	irgsp1_rep	five_prime_UTR	10897968	10897969	.	-	.	Parent=Os02t0288600-01
Chr02	irgsp1_rep	CDS	10897365	10897967	.	-	0	Parent=Os02t0288600-01
Chr02	irgsp1_rep	three_prime_UTR	10897250	10897364	.	-	.	Parent=Os02t0288600-01
Chr02	irgsp1_rep	mRNA	10908431	10914600	.	-	.	ID=Os02t0288700-00;Name=Os02t0288700-00;Locus_id=Os02g0288700;CGSNL Gene Symbol=MRP4;CGSNL Gene Name=MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OsABCC4%2C ABCC4%2C OsMRP4;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCC subgroup member 4%2C multidrug resistance-associated protein 4;Note=Similar to MRP-like ABC transporter.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8GU60 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);Oryzabase=11955;TENOR=Os02t0288700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	10912855	10914600	.	-	0	Parent=Os02t0288700-00
Chr02	irgsp1_rep	CDS	10912078	10912249	.	-	0	Parent=Os02t0288700-00
Chr02	irgsp1_rep	CDS	10911619	10912064	.	-	2	Parent=Os02t0288700-00
Chr02	irgsp1_rep	CDS	10910558	10910852	.	-	0	Parent=Os02t0288700-00
Chr02	irgsp1_rep	CDS	10910249	10910463	.	-	2	Parent=Os02t0288700-00
Chr02	irgsp1_rep	CDS	10909318	10909623	.	-	0	Parent=Os02t0288700-00
Chr02	irgsp1_rep	CDS	10908937	10909000	.	-	0	Parent=Os02t0288700-00
Chr02	irgsp1_rep	CDS	10908616	10908855	.	-	2	Parent=Os02t0288700-00
Chr02	irgsp1_rep	CDS	10908431	10908531	.	-	2	Parent=Os02t0288700-00
Chr02	irgsp1_rep	mRNA	10908608	10909003	.	+	.	ID=Os02t0288722-00;Name=Os02t0288722-00;Locus_id=Os02g0288722;Note=Non-protein coding transcript.;Transcript_evidence=tplb0011b09 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os02t0288722-00
Chr02	irgsp1_rep	exon	10908608	10909003	.	+	.	Parent=Os02t0288722-00
Chr02	irgsp1_rep	mRNA	10912992	10914012	.	+	.	ID=Os02t0288744-00;Name=Os02t0288744-00;Locus_id=Os02g0288744;Note=Hypothetical protein.;Transcript_evidence=BT009567 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0288744-00
Chr02	irgsp1_rep	five_prime_UTR	10912992	10913455	.	+	.	Parent=Os02t0288744-00
Chr02	irgsp1_rep	CDS	10913456	10913716	.	+	0	Parent=Os02t0288744-00
Chr02	irgsp1_rep	three_prime_UTR	10913717	10914012	.	+	.	Parent=Os02t0288744-00
Chr02	irgsp1_rep	mRNA	10922179	10923451	.	-	.	ID=Os02t0288862-00;Name=Os02t0288862-00;Locus_id=Os02g0288862;Note=Hypothetical protein.;Transcript_evidence=tplb0021l20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0288862-00
Chr02	irgsp1_rep	five_prime_UTR	10922667	10923451	.	-	.	Parent=Os02t0288862-00
Chr02	irgsp1_rep	CDS	10922253	10922666	.	-	0	Parent=Os02t0288862-00
Chr02	irgsp1_rep	three_prime_UTR	10922179	10922252	.	-	.	Parent=Os02t0288862-00
Chr02	irgsp1_rep	mRNA	10922187	10923461	.	+	.	ID=Os02t0288925-00;Name=Os02t0288925-00;Locus_id=Os02g0288925;Oryzabase Gene Symbol Synonym(s)=Os_F0610;Note=Hypothetical conserved gene.;Transcript_evidence=AK372860 (DDBJ);ORF_evidence=Q6K8A0 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);Oryzabase=17479;TENOR=Os02t0288925-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	10922187	10923461	.	+	0	Parent=Os02t0288925-00
Chr02	irgsp1_rep	mRNA	10931592	10932547	.	+	.	ID=Os02t0289000-01;Name=Os02t0289000-01;Locus_id=Os02g0289000;Note=BURP domain containing protein.;Transcript_evidence=AK106817 (DDBJ%2C Best hit);ORF_evidence=Q0E1Z0 (UniProt);InterPro=BURP (IPR004873);NIAS_FLcDNA=002-116-D04;Expression=AK106817;TENOR=Os02t0289000-01;KEGG=Os02t0289000-01
Chr02	irgsp1_rep	five_prime_UTR	10931592	10931777	.	+	.	Parent=Os02t0289000-01
Chr02	irgsp1_rep	CDS	10931778	10932455	.	+	0	Parent=Os02t0289000-01
Chr02	irgsp1_rep	three_prime_UTR	10932456	10932547	.	+	.	Parent=Os02t0289000-01
Chr02	irgsp1_rep	mRNA	10944010	10944784	.	-	.	ID=Os02t0289300-01;Name=Os02t0289300-01;Locus_id=Os02g0289300;Note=Hypothetical conserved gene.;Transcript_evidence=AK062485 (DDBJ%2C Best hit);ORF_evidence=NP_001173375.1 (RefSeq);NIAS_FLcDNA=001-103-G09;Expression=AK062485;TENOR=Os02t0289300-01;KEGG=Os02t0289300-01
Chr02	irgsp1_rep	five_prime_UTR	10944754	10944784	.	-	.	Parent=Os02t0289300-01
Chr02	irgsp1_rep	CDS	10944520	10944753	.	-	0	Parent=Os02t0289300-01
Chr02	irgsp1_rep	three_prime_UTR	10944399	10944519	.	-	.	Parent=Os02t0289300-01
Chr02	irgsp1_rep	three_prime_UTR	10944010	10944323	.	-	.	Parent=Os02t0289300-01
Chr02	irgsp1_rep	mRNA	10945077	10945757	.	+	.	ID=Os02t0289500-01;Name=Os02t0289500-01;Locus_id=Os02g0289500;Note=Similar to anthocyanin 5-aromatic acyltransferase.;Transcript_evidence=AK287992 (DDBJ%2C Best hit);ORF_evidence=NP_001147570.1 (RefSeq);InterPro=Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J075098J02;TENOR=Os02t0289500-01;KEGG=Os02t0289500-01
Chr02	irgsp1_rep	five_prime_UTR	10945077	10945255	.	+	.	Parent=Os02t0289500-01
Chr02	irgsp1_rep	CDS	10945256	10945543	.	+	0	Parent=Os02t0289500-01
Chr02	irgsp1_rep	three_prime_UTR	10945544	10945757	.	+	.	Parent=Os02t0289500-01
Chr02	irgsp1_rep	mRNA	10947828	10948612	.	-	.	ID=Os02t0289700-01;Name=Os02t0289700-01;Locus_id=Os02g0289700;Note=Hypothetical protein.;Transcript_evidence=AK063231 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-112-F05;TENOR=Os02t0289700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	10948611	10948612	.	-	.	Parent=Os02t0289700-01
Chr02	irgsp1_rep	CDS	10948194	10948610	.	-	0	Parent=Os02t0289700-01
Chr02	irgsp1_rep	three_prime_UTR	10947828	10948193	.	-	.	Parent=Os02t0289700-01
Chr02	irgsp1_rep	mRNA	10960662	10968059	.	+	.	ID=Os02t0290000-01;Name=Os02t0290000-01;Locus_id=Os02g0290000;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK102280 (DDBJ%2C Best hit);ORF_evidence=B8AFY8 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033089E12;Expression=AK102280;TENOR=Os02t0290000-01;KEGG=Os02t0290000-01
Chr02	irgsp1_rep	five_prime_UTR	10960662	10960741	.	+	.	Parent=Os02t0290000-01
Chr02	irgsp1_rep	five_prime_UTR	10961949	10961981	.	+	.	Parent=Os02t0290000-01
Chr02	irgsp1_rep	CDS	10961982	10964774	.	+	0	Parent=Os02t0290000-01
Chr02	irgsp1_rep	three_prime_UTR	10964775	10964877	.	+	.	Parent=Os02t0290000-01
Chr02	irgsp1_rep	three_prime_UTR	10965085	10965185	.	+	.	Parent=Os02t0290000-01
Chr02	irgsp1_rep	three_prime_UTR	10965311	10965703	.	+	.	Parent=Os02t0290000-01
Chr02	irgsp1_rep	three_prime_UTR	10967821	10968059	.	+	.	Parent=Os02t0290000-01
Chr02	irgsp1_rep	mRNA	10972770	10986645	.	-	.	ID=Os02t0290300-01;Name=Os02t0290300-01;Locus_id=Os02g0290300;Oryzabase Gene Symbol Synonym(s)=OsWD40-40;Note=WD40/YVTN repeat-like domain containing protein.;Transcript_evidence=AK068360 (DDBJ%2C Best hit);ORF_evidence=XP_002892199.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J013146O19;Oryzabase=10721;Expression=AK068360;TENOR=Os02t0290300-01;KEGG=Os02t0290300-01
Chr02	irgsp1_rep	five_prime_UTR	10986624	10986645	.	-	.	Parent=Os02t0290300-01
Chr02	irgsp1_rep	five_prime_UTR	10983579	10983604	.	-	.	Parent=Os02t0290300-01
Chr02	irgsp1_rep	CDS	10983487	10983578	.	-	0	Parent=Os02t0290300-01
Chr02	irgsp1_rep	CDS	10982517	10982666	.	-	1	Parent=Os02t0290300-01
Chr02	irgsp1_rep	CDS	10982169	10982285	.	-	1	Parent=Os02t0290300-01
Chr02	irgsp1_rep	CDS	10982012	10982096	.	-	1	Parent=Os02t0290300-01
Chr02	irgsp1_rep	CDS	10981244	10981352	.	-	0	Parent=Os02t0290300-01
Chr02	irgsp1_rep	CDS	10981083	10981150	.	-	2	Parent=Os02t0290300-01
Chr02	irgsp1_rep	CDS	10980851	10980976	.	-	0	Parent=Os02t0290300-01
Chr02	irgsp1_rep	CDS	10979934	10980624	.	-	0	Parent=Os02t0290300-01
Chr02	irgsp1_rep	CDS	10979511	10979826	.	-	2	Parent=Os02t0290300-01
Chr02	irgsp1_rep	CDS	10978851	10979054	.	-	1	Parent=Os02t0290300-01
Chr02	irgsp1_rep	CDS	10978687	10978747	.	-	1	Parent=Os02t0290300-01
Chr02	irgsp1_rep	CDS	10978298	10978411	.	-	0	Parent=Os02t0290300-01
Chr02	irgsp1_rep	CDS	10977773	10977886	.	-	0	Parent=Os02t0290300-01
Chr02	irgsp1_rep	CDS	10977606	10977692	.	-	0	Parent=Os02t0290300-01
Chr02	irgsp1_rep	CDS	10975043	10975069	.	-	0	Parent=Os02t0290300-01
Chr02	irgsp1_rep	three_prime_UTR	10975007	10975042	.	-	.	Parent=Os02t0290300-01
Chr02	irgsp1_rep	three_prime_UTR	10974672	10974785	.	-	.	Parent=Os02t0290300-01
Chr02	irgsp1_rep	three_prime_UTR	10972770	10973052	.	-	.	Parent=Os02t0290300-01
Chr02	irgsp1_rep	mRNA	10990473	10993649	.	+	.	ID=Os02t0290400-01;Name=Os02t0290400-01;Locus_id=Os02g0290400;Note=Ribosomal biogenesis%2C methyltransferase%2C  EMG1/NEP1 domain containing protein.;Transcript_evidence=AK101872 (DDBJ%2C Best hit);ORF_evidence=NP_001148942.1 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Ribosomal biogenesis%2C methyltransferase%2C EMG1/NEP1 (IPR005304);NIAS_FLcDNA=J033070F10;Expression=AK101872;TENOR=Os02t0290400-01;KEGG=Os02t0290400-01
Chr02	irgsp1_rep	five_prime_UTR	10990473	10990547	.	+	.	Parent=Os02t0290400-01
Chr02	irgsp1_rep	CDS	10990548	10990832	.	+	0	Parent=Os02t0290400-01
Chr02	irgsp1_rep	CDS	10991206	10991298	.	+	0	Parent=Os02t0290400-01
Chr02	irgsp1_rep	CDS	10991855	10991999	.	+	0	Parent=Os02t0290400-01
Chr02	irgsp1_rep	CDS	10992090	10992200	.	+	2	Parent=Os02t0290400-01
Chr02	irgsp1_rep	CDS	10992604	10992686	.	+	2	Parent=Os02t0290400-01
Chr02	irgsp1_rep	CDS	10992775	10992832	.	+	0	Parent=Os02t0290400-01
Chr02	irgsp1_rep	CDS	10993393	10993472	.	+	2	Parent=Os02t0290400-01
Chr02	irgsp1_rep	three_prime_UTR	10993473	10993649	.	+	.	Parent=Os02t0290400-01
Chr02	irgsp1_rep	mRNA	10994252	10997615	.	-	.	ID=Os02t0290500-01;Name=Os02t0290500-01;Locus_id=Os02g0290500;RAP-DB Gene Symbol Synonym(s)=OsUbDK&gamma%3B4%2C OsUbDKg4;RAP-DB Gene Name Synonym(s)=ubiquitin-like domain kinase &gamma%3B4%2C ubiquitin-like domain kinase g4;Oryzabase Gene Symbol Synonym(s)=OsUbDKgamma4%2C UbDKgamma4;Oryzabase Gene Name Synonym(s)=Ubiquitin-Like Domain Kinase gamma 4;Note=Phosphatidylinositol 3-/4-kinase (PI3/4K) family protein%2C Ubiquitin-like domain kinase%2C Control of flowering time;Transcript_evidence=AK065628;ORF_evidence=Q6K881;GO=Molecular Function: protein binding (GO:0005515),Molecular Function: kinase activity (GO:0016301);InterPro=Ubiquitin-related domain (IPR029071),Ubiquitin domain (IPR000626),Protein kinase-like domain (IPR011009),Phosphatidylinositol 3-/4-kinase%2C catalytic domain (IPR000403);NIAS_FLcDNA=J013027K22;Manual Curation=April 19%2C 2017;Literature_PMID=28254780;Oryzabase=21724;Expression=AK065628;TENOR=Os02t0290500-01;KEGG=Os02t0290500-01
Chr02	irgsp1_rep	five_prime_UTR	10997468	10997615	.	-	.	Parent=Os02t0290500-01
Chr02	irgsp1_rep	five_prime_UTR	10997157	10997300	.	-	.	Parent=Os02t0290500-01
Chr02	irgsp1_rep	five_prime_UTR	10996978	10997050	.	-	.	Parent=Os02t0290500-01
Chr02	irgsp1_rep	five_prime_UTR	10996642	10996872	.	-	.	Parent=Os02t0290500-01
Chr02	irgsp1_rep	CDS	10995337	10996641	.	-	0	Parent=Os02t0290500-01
Chr02	irgsp1_rep	CDS	10994578	10994970	.	-	0	Parent=Os02t0290500-01
Chr02	irgsp1_rep	three_prime_UTR	10994252	10994577	.	-	.	Parent=Os02t0290500-01
Chr02	irgsp1_rep	mRNA	10994252	10995821	.	-	.	ID=Os02t0290500-02;Name=Os02t0290500-02;Locus_id=Os02g0290500;Oryzabase Gene Symbol Synonym(s)=OsUbDKgamma4%2C UbDKgamma4;Oryzabase Gene Name Synonym(s)=Ubiquitin-Like Domain Kinase gamma 4;Note=Similar to phosphatidylinositol 3- and 4-kinase family protein.;Transcript_evidence=AK061705 (DDBJ%2C Best hit);ORF_evidence=NP_001147061.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Phosphatidylinositol 3-/4-kinase%2C catalytic (IPR000403),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=001-037-E06;Oryzabase=21724;Expression=AK061705;TENOR=Os02t0290500-02;KEGG=Os02t0290500-02
Chr02	irgsp1_rep	five_prime_UTR	10995820	10995821	.	-	.	Parent=Os02t0290500-02
Chr02	irgsp1_rep	CDS	10995337	10995819	.	-	0	Parent=Os02t0290500-02
Chr02	irgsp1_rep	CDS	10994578	10994970	.	-	0	Parent=Os02t0290500-02
Chr02	irgsp1_rep	three_prime_UTR	10994252	10994577	.	-	.	Parent=Os02t0290500-02
Chr02	irgsp1_rep	mRNA	10999971	11004650	.	-	.	ID=Os02t0290600-01;Name=Os02t0290600-01;Locus_id=Os02g0290600;RAP-DB Gene Symbol Synonym(s)=OsPOP5%2C POP5;RAP-DB Gene Name Synonym(s)=Prolyl Oligopeptidase 5%2C PROLYL OLIGOPEPTIDASE 5;Oryzabase Gene Symbol Synonym(s)=OsPOP5%2C POP5;Oryzabase Gene Name Synonym(s)=Prolyl Oligopeptidase 5%2C PROLYL OLIGOPEPTIDASE 5;Note=Prolyl oligopeptidase family protein%2C Abiotic stress tolerance;Transcript_evidence=AK100736;ORF_evidence=Q6K880;GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type peptidase activity (GO:0008236);InterPro=Dipeptidylpeptidase IV%2C N-terminal domain (IPR002469),Alpha/Beta hydrolase fold (IPR029058),Peptidase S9%2C prolyl oligopeptidase%2C catalytic domain (IPR001375);NIAS_FLcDNA=J023118B01;Manual Curation=January 13%2C 2017;Literature_PMID=24152437;Oryzabase=15030;TENOR=Os02t0290600-01
Chr02	irgsp1_rep	five_prime_UTR	11004507	11004650	.	-	.	Parent=Os02t0290600-01
Chr02	irgsp1_rep	five_prime_UTR	11003717	11003815	.	-	.	Parent=Os02t0290600-01
Chr02	irgsp1_rep	CDS	11003621	11003716	.	-	0	Parent=Os02t0290600-01
Chr02	irgsp1_rep	CDS	11002820	11002849	.	-	0	Parent=Os02t0290600-01
Chr02	irgsp1_rep	CDS	11001627	11002739	.	-	0	Parent=Os02t0290600-01
Chr02	irgsp1_rep	CDS	11000106	11000657	.	-	0	Parent=Os02t0290600-01
Chr02	irgsp1_rep	three_prime_UTR	10999971	11000105	.	-	.	Parent=Os02t0290600-01
Chr02	irgsp1_rep	mRNA	10999890	11002461	.	-	.	ID=Os02t0290600-02;Name=Os02t0290600-02;Locus_id=Os02g0290600;Oryzabase Gene Symbol Synonym(s)=OsPOP5%2C POP5;Oryzabase Gene Name Synonym(s)=Prolyl Oligopeptidase 5%2C PROLYL OLIGOPEPTIDASE 5;Note=Similar to predicted protein.;Transcript_evidence=AK060335 (DDBJ%2C Best hit);ORF_evidence=NP_197814.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Cellular Component: membrane (GO:0016020),Molecular Function: serine-type peptidase activity (GO:0008236);InterPro=Peptidase S9%2C prolyl oligopeptidase%2C catalytic domain (IPR001375),Peptidase S9B%2C dipeptidylpeptidase IV N-terminal (IPR002469);NIAS_FLcDNA=001-008-C02;Oryzabase=15030;Expression=AK060335;TENOR=Os02t0290600-02;KEGG=Os02t0290600-02 (EC:3.4.14.5)
Chr02	irgsp1_rep	five_prime_UTR	11002461	11002461	.	-	.	Parent=Os02t0290600-02
Chr02	irgsp1_rep	CDS	11001627	11002460	.	-	0	Parent=Os02t0290600-02
Chr02	irgsp1_rep	CDS	11000106	11000657	.	-	0	Parent=Os02t0290600-02
Chr02	irgsp1_rep	three_prime_UTR	10999890	11000105	.	-	.	Parent=Os02t0290600-02
Chr02	irgsp1_rep	mRNA	11009350	11014975	.	+	.	ID=Os02t0290900-01;Name=Os02t0290900-01;Locus_id=Os02g0290900;RAP-DB Gene Symbol Synonym(s)=RMS2%2C OsGELP34;RAP-DB Gene Name Synonym(s)=rice male sterile 2%2C GDSL esterase/lipase protein 34;CGSNL Gene Symbol=RMS2;CGSNL Gene Name=RICE MALE STERILE 2;Oryzabase Gene Symbol Synonym(s)=OsGELP34%2C GELP34%2C OsRMS2;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 34%2C rice male sterile2;Note=GDSL esterase/lipase protein%2C Mediation of lipid homeostasis%2C Anther development%2C Pollen fertility;Transcript_evidence=BT069406 (maize);ORF_evidence=Q6K877;GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=SGNH hydrolase superfamily (IPR036514),GDSL lipase/esterase (IPR001087),GDSL lipase/esterase-like%2C plant (IPR035669);Manual Curation=February 10%2C 2020;Literature_PMID=32029522,32068333;Oryzabase=10984;TENOR=Os02t0290900-00;KEGG=Os02t0290900-00;Subcellular location=endoplasmic reticulum (GO:0005783)
Chr02	irgsp1_rep	five_prime_UTR	11009350	11009377	.	+	.	Parent=Os02t0290900-01
Chr02	irgsp1_rep	CDS	11009378	11009696	.	+	0	Parent=Os02t0290900-01
Chr02	irgsp1_rep	CDS	11010886	11011043	.	+	2	Parent=Os02t0290900-01
Chr02	irgsp1_rep	CDS	11012766	11013005	.	+	0	Parent=Os02t0290900-01
Chr02	irgsp1_rep	CDS	11014405	11014660	.	+	0	Parent=Os02t0290900-01
Chr02	irgsp1_rep	CDS	11014749	11014975	.	+	2	Parent=Os02t0290900-01
Chr02	irgsp1_rep	mRNA	11015828	11017808	.	-	.	ID=Os02t0291000-00;Name=Os02t0291000-00;Locus_id=Os02g0291000;CGSNL Gene Symbol=CBL7;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN 7;Oryzabase Gene Symbol Synonym(s)=OsCBL7;Oryzabase Gene Name Synonym(s)=Calcineurin B-like protein 7;Note=Calcineurin B (Fragment).;Transcript_evidence=DQ201201 (DDBJ%2C Best hit);ORF_evidence=Q3HRP0 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Recoverin (IPR001125),Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249);Oryzabase=6104;TENOR=Os02t0291000-00;KEGG=Os02t0291000-00
Chr02	irgsp1_rep	CDS	11017730	11017808	.	-	0	Parent=Os02t0291000-00
Chr02	irgsp1_rep	CDS	11017559	11017641	.	-	2	Parent=Os02t0291000-00
Chr02	irgsp1_rep	CDS	11017386	11017445	.	-	0	Parent=Os02t0291000-00
Chr02	irgsp1_rep	CDS	11017126	11017234	.	-	0	Parent=Os02t0291000-00
Chr02	irgsp1_rep	CDS	11016710	11016762	.	-	2	Parent=Os02t0291000-00
Chr02	irgsp1_rep	CDS	11016201	11016281	.	-	0	Parent=Os02t0291000-00
Chr02	irgsp1_rep	CDS	11016003	11016115	.	-	0	Parent=Os02t0291000-00
Chr02	irgsp1_rep	CDS	11015828	11015891	.	-	1	Parent=Os02t0291000-00
Chr02	irgsp1_rep	mRNA	11057896	11059975	.	-	.	ID=Os02t0291400-00;Name=Os02t0291400-00;Locus_id=Os02g0291400;CGSNL Gene Symbol=CBL8;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN 8;Oryzabase Gene Symbol Synonym(s)=OsCBL8;Oryzabase Gene Name Synonym(s)=Calcineurin B-like protein 8;Note=Similar to Calcineurin B-like protein 8.;Transcript_evidence=DQ201202 (DDBJ%2C Best hit);ORF_evidence=Q3HRN9 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Recoverin (IPR001125),Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249);Oryzabase=6105;TENOR=Os02t0291400-00;KEGG=Os02t0291400-00
Chr02	irgsp1_rep	CDS	11059897	11059975	.	-	0	Parent=Os02t0291400-00
Chr02	irgsp1_rep	CDS	11059709	11059791	.	-	2	Parent=Os02t0291400-00
Chr02	irgsp1_rep	CDS	11059547	11059606	.	-	0	Parent=Os02t0291400-00
Chr02	irgsp1_rep	CDS	11059262	11059370	.	-	0	Parent=Os02t0291400-00
Chr02	irgsp1_rep	CDS	11059089	11059141	.	-	2	Parent=Os02t0291400-00
Chr02	irgsp1_rep	CDS	11058627	11058707	.	-	0	Parent=Os02t0291400-00
Chr02	irgsp1_rep	CDS	11058364	11058476	.	-	0	Parent=Os02t0291400-00
Chr02	irgsp1_rep	CDS	11057896	11057959	.	-	1	Parent=Os02t0291400-00
Chr02	irgsp1_rep	mRNA	11066134	11067381	.	-	.	ID=Os02t0291500-01;Name=Os02t0291500-01;Locus_id=Os02g0291500;Note=Conserved hypothetical protein.;Transcript_evidence=AK062800 (DDBJ%2C Best hit);ORF_evidence=XP_002468634.1 (RefSeq);NIAS_FLcDNA=001-107-C12;TENOR=Os02t0291500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	11067380	11067381	.	-	.	Parent=Os02t0291500-01
Chr02	irgsp1_rep	CDS	11067152	11067379	.	-	0	Parent=Os02t0291500-01
Chr02	irgsp1_rep	CDS	11066848	11067035	.	-	0	Parent=Os02t0291500-01
Chr02	irgsp1_rep	CDS	11066590	11066749	.	-	1	Parent=Os02t0291500-01
Chr02	irgsp1_rep	three_prime_UTR	11066134	11066589	.	-	.	Parent=Os02t0291500-01
Chr02	irgsp1_rep	mRNA	11071696	11077522	.	+	.	ID=Os02t0291600-01;Name=Os02t0291600-01;Locus_id=Os02g0291600;CGSNL Gene Symbol=GELP35;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 35;Oryzabase Gene Symbol Synonym(s)=OsGELP35;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 35;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK101883 (DDBJ%2C Best hit);ORF_evidence=B9F540 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=J033070K23;Oryzabase=10985;Expression=AK101883;TENOR=Os02t0291600-01;KEGG=Os02t0291600-01
Chr02	irgsp1_rep	five_prime_UTR	11071696	11071709	.	+	.	Parent=Os02t0291600-01
Chr02	irgsp1_rep	CDS	11071710	11071986	.	+	0	Parent=Os02t0291600-01
Chr02	irgsp1_rep	CDS	11072632	11072753	.	+	2	Parent=Os02t0291600-01
Chr02	irgsp1_rep	CDS	11073539	11074049	.	+	0	Parent=Os02t0291600-01
Chr02	irgsp1_rep	CDS	11077051	11077268	.	+	2	Parent=Os02t0291600-01
Chr02	irgsp1_rep	three_prime_UTR	11077269	11077522	.	+	.	Parent=Os02t0291600-01
Chr02	irgsp1_rep	mRNA	11116177	11120334	.	+	.	ID=Os02t0292600-01;Name=Os02t0292600-01;Locus_id=Os02g0292600;CGSNL Gene Symbol=GELP37;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 37;Oryzabase Gene Symbol Synonym(s)=OsGELP37;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 37;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK106688 (DDBJ%2C Best hit);ORF_evidence=A3A5R7 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=002-114-C04;Oryzabase=10987;Expression=AK106688;TENOR=Os02t0292600-01;KEGG=Os02t0292600-01
Chr02	irgsp1_rep	five_prime_UTR	11116177	11116286	.	+	.	Parent=Os02t0292600-01
Chr02	irgsp1_rep	CDS	11116287	11116482	.	+	0	Parent=Os02t0292600-01
Chr02	irgsp1_rep	CDS	11117692	11117901	.	+	2	Parent=Os02t0292600-01
Chr02	irgsp1_rep	CDS	11118450	11118574	.	+	2	Parent=Os02t0292600-01
Chr02	irgsp1_rep	CDS	11119266	11119758	.	+	0	Parent=Os02t0292600-01
Chr02	irgsp1_rep	CDS	11119899	11120104	.	+	2	Parent=Os02t0292600-01
Chr02	irgsp1_rep	three_prime_UTR	11120105	11120334	.	+	.	Parent=Os02t0292600-01
Chr02	irgsp1_rep	mRNA	11126248	11127515	.	-	.	ID=Os02t0292800-01;Name=Os02t0292800-01;Locus_id=Os02g0292800;Note=Protein of unknown function DUF599 family protein.;Transcript_evidence=AK106941 (DDBJ%2C Best hit);ORF_evidence=A2X3M9 (UniProt);InterPro=Protein of unknown function DUF599 (IPR006747);NIAS_FLcDNA=002-119-D05;Expression=AK106941;TENOR=Os02t0292800-01;KEGG=Os02t0292800-01
Chr02	irgsp1_rep	five_prime_UTR	11127336	11127515	.	-	.	Parent=Os02t0292800-01
Chr02	irgsp1_rep	CDS	11127174	11127335	.	-	0	Parent=Os02t0292800-01
Chr02	irgsp1_rep	CDS	11126499	11127089	.	-	0	Parent=Os02t0292800-01
Chr02	irgsp1_rep	three_prime_UTR	11126248	11126498	.	-	.	Parent=Os02t0292800-01
Chr02	irgsp1_rep	mRNA	11126629	11127361	.	+	.	ID=Os02t0293050-00;Name=Os02t0293050-00;Locus_id=Os02g0293050;Note=Hypothetical protein.;Transcript_evidence=AK375422 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0293050-00
Chr02	irgsp1_rep	five_prime_UTR	11126629	11126630	.	+	.	Parent=Os02t0293050-00
Chr02	irgsp1_rep	CDS	11126631	11127361	.	+	0	Parent=Os02t0293050-00
Chr02	irgsp1_rep	mRNA	11151750	11156506	.	+	.	ID=Os02t0293300-01;Name=Os02t0293300-01;Locus_id=Os02g0293300;RAP-DB Gene Symbol Synonym(s)=OsFDML1;RAP-DB Gene Name Synonym(s)=FACTOR OF DNA METHYLATION LIKE 1;Oryzabase Gene Symbol Synonym(s)=OsFDML1%2C FDML1;Oryzabase Gene Name Synonym(s)=FACTOR OF DNA METHYLATION LIKE 1;Note=Homolog of Arabidopsis FACTOR OF DNA METHYLATION 1%2C Regulation of floral organ specification and meristem determination;Transcript_evidence=AK242745;ORF_evidence=Q6KAC4;GO=Biological Process: gene silencing by RNA (GO:0031047);InterPro=XS domain superfamily (IPR038588),Zinc finger-XS domain (IPR005381),XS domain (IPR005380),Uncharacterised domain XH (IPR005379);NIAS_FLcDNA=J090050D05;Manual Curation=May 30%2C 2018;Literature_PMID=29717020;Oryzabase=22415;TENOR=Os02t0293300-01;Subcellular location=nucleus (GO:0005634)
Chr02	irgsp1_rep	five_prime_UTR	11151750	11151804	.	+	.	Parent=Os02t0293300-01
Chr02	irgsp1_rep	five_prime_UTR	11153614	11153620	.	+	.	Parent=Os02t0293300-01
Chr02	irgsp1_rep	CDS	11153621	11154503	.	+	0	Parent=Os02t0293300-01
Chr02	irgsp1_rep	CDS	11154639	11154820	.	+	2	Parent=Os02t0293300-01
Chr02	irgsp1_rep	CDS	11155063	11155152	.	+	0	Parent=Os02t0293300-01
Chr02	irgsp1_rep	CDS	11155246	11155530	.	+	0	Parent=Os02t0293300-01
Chr02	irgsp1_rep	CDS	11155679	11155897	.	+	0	Parent=Os02t0293300-01
Chr02	irgsp1_rep	CDS	11156015	11156242	.	+	0	Parent=Os02t0293300-01
Chr02	irgsp1_rep	three_prime_UTR	11156243	11156506	.	+	.	Parent=Os02t0293300-01
Chr02	irgsp1_rep	mRNA	11156872	11160271	.	+	.	ID=Os02t0293350-01;Name=Os02t0293350-01;Locus_id=Os02g0293350;Note=Hypothetical gene.;Transcript_evidence=AK288590 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090050L20;TENOR=Os02t0293350-01;KEGG=Os02t0293350-01
Chr02	irgsp1_rep	five_prime_UTR	11156872	11158789	.	+	.	Parent=Os02t0293350-01
Chr02	irgsp1_rep	CDS	11158790	11159032	.	+	0	Parent=Os02t0293350-01
Chr02	irgsp1_rep	three_prime_UTR	11159033	11160271	.	+	.	Parent=Os02t0293350-01
Chr02	irgsp1_rep	mRNA	11157096	11161168	.	-	.	ID=Os02t0293400-01;Name=Os02t0293400-01;Locus_id=Os02g0293400;Oryzabase Gene Symbol Synonym(s)=SIP14;Oryzabase Gene Name Synonym(s)=SKIP interacting protein 14%2C SKIPa-interacting protein 14%2C SKIPa-interacting protein 14;Note=Similar to Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven in absentia homolog 5). Splice isoform 2.;Transcript_evidence=AK072985 (DDBJ%2C Best hit);ORF_evidence=Q30KI2 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Biological Process: multicellular organismal development (GO:0007275),Biological Process: protein ubiquitination (GO:0016567),Cellular Component: nucleus (GO:0005634),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Seven-in-absentia protein%2C sina (IPR004162),TRAF-like (IPR008974),Zinc finger%2C SIAH-type (IPR013010),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),TRAF-type (IPR013322),Seven In Absentia Homolog-type (IPR013323),Seven-in-absentia protein%2C TRAF-like domain (IPR018121);NIAS_FLcDNA=J023149D24;Oryzabase=9946;Expression=AK072985;TENOR=Os02t0293400-01;KEGG=Os02t0293400-01 (EC:6.3.2.19)
Chr02	irgsp1_rep	five_prime_UTR	11160874	11161168	.	-	.	Parent=Os02t0293400-01
Chr02	irgsp1_rep	CDS	11160574	11160873	.	-	0	Parent=Os02t0293400-01
Chr02	irgsp1_rep	CDS	11158000	11158386	.	-	0	Parent=Os02t0293400-01
Chr02	irgsp1_rep	CDS	11157497	11157859	.	-	0	Parent=Os02t0293400-01
Chr02	irgsp1_rep	three_prime_UTR	11157096	11157496	.	-	.	Parent=Os02t0293400-01
Chr02	irgsp1_rep	mRNA	11162557	11166291	.	-	.	ID=Os02t0293500-01;Name=Os02t0293500-01;Locus_id=Os02g0293500;Note=Similar to CLP protease regulatory subunit CLPX precursor.;Transcript_evidence=AK242797 (DDBJ%2C Best hit);ORF_evidence=NP_001147507.1 (RefSeq);InterPro=Clp ATPase%2C C-terminal (IPR019489);NIAS_FLcDNA=J090058H08;TENOR=Os02t0293500-01;KEGG=Os02t0293500-01
Chr02	irgsp1_rep	five_prime_UTR	11166290	11166291	.	-	.	Parent=Os02t0293500-01
Chr02	irgsp1_rep	CDS	11166239	11166289	.	-	0	Parent=Os02t0293500-01
Chr02	irgsp1_rep	CDS	11166031	11166135	.	-	0	Parent=Os02t0293500-01
Chr02	irgsp1_rep	CDS	11165307	11165369	.	-	0	Parent=Os02t0293500-01
Chr02	irgsp1_rep	CDS	11165079	11165201	.	-	0	Parent=Os02t0293500-01
Chr02	irgsp1_rep	CDS	11163416	11163571	.	-	0	Parent=Os02t0293500-01
Chr02	irgsp1_rep	CDS	11162771	11162845	.	-	0	Parent=Os02t0293500-01
Chr02	irgsp1_rep	three_prime_UTR	11162557	11162770	.	-	.	Parent=Os02t0293500-01
Chr02	irgsp1_rep	mRNA	11162645	11166101	.	+	.	ID=Os02t0293575-00;Name=Os02t0293575-00;Locus_id=Os02g0293575;Note=Hypothetical protein.;Transcript_evidence=BT019185 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0293575-00
Chr02	irgsp1_rep	five_prime_UTR	11162645	11162814	.	+	.	Parent=Os02t0293575-00
Chr02	irgsp1_rep	five_prime_UTR	11163379	11163430	.	+	.	Parent=Os02t0293575-00
Chr02	irgsp1_rep	CDS	11163431	11163558	.	+	0	Parent=Os02t0293575-00
Chr02	irgsp1_rep	CDS	11165065	11165167	.	+	1	Parent=Os02t0293575-00
Chr02	irgsp1_rep	three_prime_UTR	11165168	11165184	.	+	.	Parent=Os02t0293575-00
Chr02	irgsp1_rep	three_prime_UTR	11165293	11165361	.	+	.	Parent=Os02t0293575-00
Chr02	irgsp1_rep	three_prime_UTR	11166027	11166101	.	+	.	Parent=Os02t0293575-00
Chr02	irgsp1_rep	mRNA	11180090	11182653	.	+	.	ID=Os02t0293800-01;Name=Os02t0293800-01;Locus_id=Os02g0293800;Note=Conserved hypothetical protein.;Transcript_evidence=AK103308 (DDBJ%2C Best hit);ORF_evidence=A3A5S8 (UniProt);NIAS_FLcDNA=J033125F08;TENOR=Os02t0293800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	11180090	11180126	.	+	.	Parent=Os02t0293800-01
Chr02	irgsp1_rep	CDS	11180127	11180429	.	+	0	Parent=Os02t0293800-01
Chr02	irgsp1_rep	three_prime_UTR	11180430	11182653	.	+	.	Parent=Os02t0293800-01
Chr02	irgsp1_rep	mRNA	11180905	11182663	.	+	.	ID=Os02t0293800-02;Name=Os02t0293800-02;Locus_id=Os02g0293800;Note=Hypothetical conserved gene.;Transcript_evidence=AK058474 (DDBJ%2C Best hit);ORF_evidence=A3A5S8 (UniProt);InterPro=Protein of unknown function DUF2043 (IPR018610);NIAS_FLcDNA=001-016-C01;Expression=AK058474;TENOR=Os02t0293800-02;KEGG=Os02t0293800-02
Chr02	irgsp1_rep	CDS	11180905	11182368	.	+	0	Parent=Os02t0293800-02
Chr02	irgsp1_rep	three_prime_UTR	11182369	11182663	.	+	.	Parent=Os02t0293800-02
Chr02	irgsp1_rep	mRNA	11183598	11184446	.	-	.	ID=Os02t0293900-00;Name=Os02t0293900-00;Locus_id=Os02g0293900;CGSNL Gene Symbol=DLN54;CGSNL Gene Name=DLN REPRESSOR 54;Oryzabase Gene Symbol Synonym(s)=OsDLN54;Oryzabase Gene Name Synonym(s)=DLN repressor 54%2C DLN motif protein 54;Note=Similar to nucleic acid binding protein.;Transcript_evidence=EU975188 (DDBJ);ORF_evidence=NP_001152373.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);Oryzabase=23169;TENOR=Os02t0293900-00;KEGG=Os02t0293900-00
Chr02	irgsp1_rep	five_prime_UTR	11184390	11184446	.	-	.	Parent=Os02t0293900-00
Chr02	irgsp1_rep	CDS	11183598	11184389	.	-	0	Parent=Os02t0293900-00
Chr02	irgsp1_rep	mRNA	11186713	11187816	.	+	.	ID=Os02t0294000-00;Name=Os02t0294000-00;Locus_id=Os02g0294000;Note=Micro-fibrillar-associated 1%2C C-terminal domain containing protein.;Transcript_evidence=EU974586 (DDBJ);ORF_evidence=Q6KAB7 (UniProt);InterPro=Micro-fibrillar-associated 1%2C C-terminal (IPR009730);TENOR=Os02t0294000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	11186713	11186727	.	+	.	Parent=Os02t0294000-00
Chr02	irgsp1_rep	CDS	11186728	11187816	.	+	0	Parent=Os02t0294000-00
Chr02	irgsp1_rep	mRNA	11188432	11193873	.	-	.	ID=Os02t0294100-01;Name=Os02t0294100-01;Locus_id=Os02g0294100;Oryzabase Gene Symbol Synonym(s)=OsFbox082%2C OsFbox82%2C Os_F0509;Oryzabase Gene Name Synonym(s)=F-box protein 82;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK066590 (DDBJ%2C Best hit);ORF_evidence=A2X3P0 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013074I12;Oryzabase=16877;Expression=AK066590;TENOR=Os02t0294100-01;KEGG=Os02t0294100-01
Chr02	irgsp1_rep	five_prime_UTR	11193776	11193873	.	-	.	Parent=Os02t0294100-01
Chr02	irgsp1_rep	CDS	11192504	11193775	.	-	0	Parent=Os02t0294100-01
Chr02	irgsp1_rep	three_prime_UTR	11189477	11192503	.	-	.	Parent=Os02t0294100-01
Chr02	irgsp1_rep	three_prime_UTR	11188432	11188714	.	-	.	Parent=Os02t0294100-01
Chr02	irgsp1_rep	mRNA	11192378	11193775	.	-	.	ID=Os02t0294100-02;Name=Os02t0294100-02;Locus_id=Os02g0294100;Oryzabase Gene Symbol Synonym(s)=OsFbox082%2C OsFbox82%2C Os_F0509;Oryzabase Gene Name Synonym(s)=F-box protein 82;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK106048 (DDBJ%2C Best hit);ORF_evidence=A2X3P0 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=001-206-E10;Oryzabase=16877;TENOR=Os02t0294100-02;KEGG=Os02t0294100-02
Chr02	irgsp1_rep	CDS	11192504	11193775	.	-	0	Parent=Os02t0294100-02
Chr02	irgsp1_rep	three_prime_UTR	11192378	11192503	.	-	.	Parent=Os02t0294100-02
Chr02	irgsp1_rep	mRNA	11199426	11205676	.	+	.	ID=Os02t0294600-01;Name=Os02t0294600-01;Locus_id=Os02g0294600;Oryzabase Gene Symbol Synonym(s)=OsWD40-41;Note=Similar to transducin family protein / WD-40 repeat family protein.;Transcript_evidence=AK101077 (DDBJ%2C Best hit);ORF_evidence=NP_001078546.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),LisH dimerisation motif (IPR006594),CTLH%2C C-terminal LisH motif (IPR006595),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J033024C11;Oryzabase=10722;TENOR=Os02t0294600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	11199426	11199711	.	+	.	Parent=Os02t0294600-01
Chr02	irgsp1_rep	five_prime_UTR	11200476	11200581	.	+	.	Parent=Os02t0294600-01
Chr02	irgsp1_rep	CDS	11200582	11201373	.	+	0	Parent=Os02t0294600-01
Chr02	irgsp1_rep	CDS	11202753	11202854	.	+	0	Parent=Os02t0294600-01
Chr02	irgsp1_rep	CDS	11203761	11204399	.	+	0	Parent=Os02t0294600-01
Chr02	irgsp1_rep	three_prime_UTR	11204400	11205676	.	+	.	Parent=Os02t0294600-01
Chr02	irgsp1_rep	mRNA	11209135	11211943	.	-	.	ID=Os02t0294700-01;Name=Os02t0294700-01;Locus_id=Os02g0294700;Note=Topoisomerase II-associated protein PAT1 domain containing protein.;Transcript_evidence=AK069078 (DDBJ%2C Best hit);ORF_evidence=A3A5T3 (UniProt);InterPro=Topoisomerase II-associated protein PAT1 (IPR019167);NIAS_FLcDNA=J023003B22;TENOR=Os02t0294700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	11211943	11211943	.	-	.	Parent=Os02t0294700-01
Chr02	irgsp1_rep	CDS	11209876	11211942	.	-	0	Parent=Os02t0294700-01
Chr02	irgsp1_rep	three_prime_UTR	11209135	11209875	.	-	.	Parent=Os02t0294700-01
Chr02	irgsp1_rep	mRNA	11292722	11300269	.	-	.	ID=Os02t0295700-01;Name=Os02t0295700-01;Locus_id=Os02g0295700;Note=Aldehyde dehydrogenase%2C conserved site domain containing protein.;Transcript_evidence=AK070497 (DDBJ%2C Best hit);ORF_evidence=B8AFW0 (UniProt);InterPro=Topoisomerase II-associated protein PAT1 (IPR019167);NIAS_FLcDNA=J023054B07;Expression=AK070497;TENOR=Os02t0295700-01;KEGG=Os02t0295700-01
Chr02	irgsp1_rep	five_prime_UTR	11300060	11300269	.	-	.	Parent=Os02t0295700-01
Chr02	irgsp1_rep	CDS	11300026	11300059	.	-	0	Parent=Os02t0295700-01
Chr02	irgsp1_rep	CDS	11299532	11299692	.	-	2	Parent=Os02t0295700-01
Chr02	irgsp1_rep	CDS	11296171	11296227	.	-	0	Parent=Os02t0295700-01
Chr02	irgsp1_rep	CDS	11295874	11295943	.	-	0	Parent=Os02t0295700-01
Chr02	irgsp1_rep	CDS	11293412	11295582	.	-	2	Parent=Os02t0295700-01
Chr02	irgsp1_rep	three_prime_UTR	11292722	11293411	.	-	.	Parent=Os02t0295700-01
Chr02	irgsp1_rep	mRNA	11292858	11294043	.	-	.	ID=Os02t0295700-02;Name=Os02t0295700-02;Locus_id=Os02g0295700;Note=Aldehyde dehydrogenase%2C conserved site domain containing protein.;Transcript_evidence=AK102545 (DDBJ%2C Best hit);ORF_evidence=B8AFW0 (UniProt);NIAS_FLcDNA=J033096N20;Expression=AK102545;TENOR=Os02t0295700-02;KEGG=Os02t0295700-02
Chr02	irgsp1_rep	five_prime_UTR	11294042	11294043	.	-	.	Parent=Os02t0295700-02
Chr02	irgsp1_rep	CDS	11293412	11294041	.	-	0	Parent=Os02t0295700-02
Chr02	irgsp1_rep	three_prime_UTR	11292858	11293411	.	-	.	Parent=Os02t0295700-02
Chr02	irgsp1_rep	mRNA	11339961	11346765	.	+	.	ID=Os02t0296350-01;Name=Os02t0296350-01;Locus_id=Os02g0296350;Note=Non-protein coding transcript.;Transcript_evidence=AK242259 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J075183G10;TENOR=Os02t0296350-01
Chr02	irgsp1_rep	exon	11339961	11340279	.	+	.	Parent=Os02t0296350-01
Chr02	irgsp1_rep	exon	11340414	11340483	.	+	.	Parent=Os02t0296350-01
Chr02	irgsp1_rep	exon	11340582	11340772	.	+	.	Parent=Os02t0296350-01
Chr02	irgsp1_rep	exon	11341966	11342061	.	+	.	Parent=Os02t0296350-01
Chr02	irgsp1_rep	exon	11343347	11343453	.	+	.	Parent=Os02t0296350-01
Chr02	irgsp1_rep	exon	11344371	11344413	.	+	.	Parent=Os02t0296350-01
Chr02	irgsp1_rep	exon	11344494	11344583	.	+	.	Parent=Os02t0296350-01
Chr02	irgsp1_rep	exon	11344846	11344917	.	+	.	Parent=Os02t0296350-01
Chr02	irgsp1_rep	exon	11346569	11346765	.	+	.	Parent=Os02t0296350-01
Chr02	irgsp1_rep	mRNA	11340114	11344944	.	-	.	ID=Os02t0296400-00;Name=Os02t0296400-00;Locus_id=Os02g0296400;Oryzabase Gene Symbol Synonym(s)=OsEnS-35;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 35;Note=Similar to RCD1.;Transcript_evidence=BT024102 (DDBJ);ORF_evidence=Q9LT41 (UniProt);InterPro=Cell differentiation%2C Rcd1-like (IPR007216);Oryzabase=18367;TENOR=Os02t0296400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	11344846	11344944	.	-	0	Parent=Os02t0296400-00
Chr02	irgsp1_rep	CDS	11344494	11344583	.	-	0	Parent=Os02t0296400-00
Chr02	irgsp1_rep	CDS	11344371	11344413	.	-	0	Parent=Os02t0296400-00
Chr02	irgsp1_rep	CDS	11343347	11343453	.	-	2	Parent=Os02t0296400-00
Chr02	irgsp1_rep	CDS	11341966	11342061	.	-	0	Parent=Os02t0296400-00
Chr02	irgsp1_rep	CDS	11340582	11340772	.	-	0	Parent=Os02t0296400-00
Chr02	irgsp1_rep	CDS	11340414	11340483	.	-	1	Parent=Os02t0296400-00
Chr02	irgsp1_rep	CDS	11340172	11340279	.	-	0	Parent=Os02t0296400-00
Chr02	irgsp1_rep	three_prime_UTR	11340114	11340171	.	-	.	Parent=Os02t0296400-00
Chr02	irgsp1_rep	mRNA	11353288	11357713	.	-	.	ID=Os02t0296800-01;Name=Os02t0296800-01;Locus_id=Os02g0296800;Note=Cobalamin (vitamin B12) biosynthesis CbiX domain containing protein.;Transcript_evidence=AK064811 (DDBJ%2C Best hit);ORF_evidence=B6TXB2 (UniProt);GO=Biological Process: cobalamin biosynthetic process (GO:0009236),Molecular Function: lyase activity (GO:0016829),Molecular Function: metal ion binding (GO:0046872);InterPro=Cobalamin (vitamin B12) biosynthesis CbiX (IPR002762);NIAS_FLcDNA=J013000E01;Expression=AK064811;TENOR=Os02t0296800-01;KEGG=Os02t0296800-01
Chr02	irgsp1_rep	five_prime_UTR	11357341	11357713	.	-	.	Parent=Os02t0296800-01
Chr02	irgsp1_rep	five_prime_UTR	11356950	11357105	.	-	.	Parent=Os02t0296800-01
Chr02	irgsp1_rep	five_prime_UTR	11354667	11356845	.	-	.	Parent=Os02t0296800-01
Chr02	irgsp1_rep	CDS	11354493	11354666	.	-	0	Parent=Os02t0296800-01
Chr02	irgsp1_rep	CDS	11354224	11354316	.	-	0	Parent=Os02t0296800-01
Chr02	irgsp1_rep	CDS	11353559	11353663	.	-	0	Parent=Os02t0296800-01
Chr02	irgsp1_rep	three_prime_UTR	11353288	11353558	.	-	.	Parent=Os02t0296800-01
Chr02	irgsp1_rep	mRNA	11357264	11361527	.	+	.	ID=Os02t0297000-01;Name=Os02t0297000-01;Locus_id=Os02g0297000;Note=Conserved hypothetical protein.;Transcript_evidence=AK288895 (DDBJ%2C Best hit);ORF_evidence=Q6Z984 (UniProt);NIAS_FLcDNA=J090080F08;TENOR=Os02t0297000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	11357264	11358956	.	+	.	Parent=Os02t0297000-01
Chr02	irgsp1_rep	CDS	11358957	11359148	.	+	0	Parent=Os02t0297000-01
Chr02	irgsp1_rep	three_prime_UTR	11359149	11361527	.	+	.	Parent=Os02t0297000-01
Chr02	irgsp1_rep	mRNA	11362552	11363201	.	-	.	ID=Os02t0297066-00;Name=Os02t0297066-00;Locus_id=Os02g0297066;Note=Hypothetical gene.;Transcript_evidence=BT061280 (DDBJ);ORF_evidence=longestORF;InterPro=Protein of unknown function DUF3170 (IPR021510);TENOR=Os02t0297066-00;KEGG=Os02t0297066-00
Chr02	irgsp1_rep	CDS	11362985	11363201	.	-	0	Parent=Os02t0297066-00
Chr02	irgsp1_rep	CDS	11362552	11362886	.	-	2	Parent=Os02t0297066-00
Chr02	irgsp1_rep	mRNA	11362531	11363765	.	+	.	ID=Os02t0297132-00;Name=Os02t0297132-00;Locus_id=Os02g0297132;Note=Similar to heat-shock protein 101.;Transcript_evidence=AM086427 (DDBJ);ORF_evidence=NP_001104935.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=Chaperonin ClpA/B (IPR001270),ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-2 (IPR013093),Clp ATPase%2C C-terminal (IPR019489);TENOR=Os02t0297132-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	11362531	11362880	.	+	0	Parent=Os02t0297132-00
Chr02	irgsp1_rep	CDS	11362982	11363765	.	+	1	Parent=Os02t0297132-00
Chr02	irgsp1_rep	mRNA	11376851	11379304	.	-	.	ID=Os02t0297200-01;Name=Os02t0297200-01;Locus_id=Os02g0297200;Oryzabase Gene Name Synonym(s)=beta-ketoacyl synthase;Note=Protein of unknown function DUF594 family protein.;Transcript_evidence=AK107164 (DDBJ%2C Best hit);ORF_evidence=B8AFX1 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);NIAS_FLcDNA=002-124-F06;Oryzabase=16028;Expression=AK107164;TENOR=Os02t0297200-01;KEGG=Os02t0297200-01
Chr02	irgsp1_rep	five_prime_UTR	11379212	11379304	.	-	.	Parent=Os02t0297200-01
Chr02	irgsp1_rep	CDS	11376920	11379211	.	-	0	Parent=Os02t0297200-01
Chr02	irgsp1_rep	three_prime_UTR	11376851	11376919	.	-	.	Parent=Os02t0297200-01
Chr02	irgsp1_rep	mRNA	11395866	11396949	.	-	.	ID=Os02t0297550-01;Name=Os02t0297550-01;Locus_id=Os02g0297550;Note=Hypothetical gene.;Transcript_evidence=AK241113 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J065092C05;TENOR=Os02t0297550-01;KEGG=Os02t0297550-01
Chr02	irgsp1_rep	five_prime_UTR	11396858	11396949	.	-	.	Parent=Os02t0297550-01
Chr02	irgsp1_rep	CDS	11396591	11396857	.	-	0	Parent=Os02t0297550-01
Chr02	irgsp1_rep	three_prime_UTR	11395866	11396590	.	-	.	Parent=Os02t0297550-01
Chr02	irgsp1_rep	mRNA	11399635	11404045	.	+	.	ID=Os02t0297600-01;Name=Os02t0297600-01;Locus_id=Os02g0297600;Note=Protein of unknown function DUF707 family protein.;Transcript_evidence=AK122023 (DDBJ%2C Best hit),AK064947 (DDBJ%2C Best hit);ORF_evidence=NP_001149970.1 (RefSeq);InterPro=Protein of unknown function DUF707 (IPR007877);NIAS_FLcDNA=J033111P12,J013000P17;TENOR=Os02t0297600-01
Chr02	irgsp1_rep	five_prime_UTR	11399635	11399965	.	+	.	Parent=Os02t0297600-01
Chr02	irgsp1_rep	five_prime_UTR	11400373	11400441	.	+	.	Parent=Os02t0297600-01
Chr02	irgsp1_rep	CDS	11400442	11400473	.	+	0	Parent=Os02t0297600-01
Chr02	irgsp1_rep	CDS	11400651	11400756	.	+	1	Parent=Os02t0297600-01
Chr02	irgsp1_rep	CDS	11400849	11400992	.	+	0	Parent=Os02t0297600-01
Chr02	irgsp1_rep	CDS	11401378	11401482	.	+	0	Parent=Os02t0297600-01
Chr02	irgsp1_rep	CDS	11401594	11401677	.	+	0	Parent=Os02t0297600-01
Chr02	irgsp1_rep	CDS	11401842	11401957	.	+	0	Parent=Os02t0297600-01
Chr02	irgsp1_rep	CDS	11402062	11402163	.	+	1	Parent=Os02t0297600-01
Chr02	irgsp1_rep	CDS	11402243	11402356	.	+	1	Parent=Os02t0297600-01
Chr02	irgsp1_rep	CDS	11402444	11402500	.	+	1	Parent=Os02t0297600-01
Chr02	irgsp1_rep	CDS	11402585	11402651	.	+	1	Parent=Os02t0297600-01
Chr02	irgsp1_rep	CDS	11402724	11402777	.	+	0	Parent=Os02t0297600-01
Chr02	irgsp1_rep	CDS	11403165	11403239	.	+	0	Parent=Os02t0297600-01
Chr02	irgsp1_rep	CDS	11403329	11403364	.	+	0	Parent=Os02t0297600-01
Chr02	irgsp1_rep	CDS	11403479	11403592	.	+	0	Parent=Os02t0297600-01
Chr02	irgsp1_rep	three_prime_UTR	11403593	11404045	.	+	.	Parent=Os02t0297600-01
Chr02	irgsp1_rep	mRNA	11399692	11403966	.	+	.	ID=Os02t0297600-02;Name=Os02t0297600-02;Locus_id=Os02g0297600;Note=Protein of unknown function DUF707 family protein.;Transcript_evidence=AK101533 (DDBJ%2C Best hit);ORF_evidence=NP_001149970.1 (RefSeq);InterPro=Protein of unknown function DUF707 (IPR007877);NIAS_FLcDNA=J033048C01;Expression=AK101533;TENOR=Os02t0297600-02;KEGG=Os02t0297600-02
Chr02	irgsp1_rep	five_prime_UTR	11399692	11399965	.	+	.	Parent=Os02t0297600-02
Chr02	irgsp1_rep	five_prime_UTR	11400373	11400441	.	+	.	Parent=Os02t0297600-02
Chr02	irgsp1_rep	CDS	11400442	11400473	.	+	0	Parent=Os02t0297600-02
Chr02	irgsp1_rep	CDS	11400651	11400756	.	+	1	Parent=Os02t0297600-02
Chr02	irgsp1_rep	CDS	11400849	11400992	.	+	0	Parent=Os02t0297600-02
Chr02	irgsp1_rep	CDS	11401378	11401482	.	+	0	Parent=Os02t0297600-02
Chr02	irgsp1_rep	CDS	11401594	11401677	.	+	0	Parent=Os02t0297600-02
Chr02	irgsp1_rep	CDS	11401842	11401957	.	+	0	Parent=Os02t0297600-02
Chr02	irgsp1_rep	CDS	11402062	11402163	.	+	1	Parent=Os02t0297600-02
Chr02	irgsp1_rep	CDS	11402243	11402356	.	+	1	Parent=Os02t0297600-02
Chr02	irgsp1_rep	CDS	11402444	11402500	.	+	1	Parent=Os02t0297600-02
Chr02	irgsp1_rep	CDS	11402585	11402651	.	+	1	Parent=Os02t0297600-02
Chr02	irgsp1_rep	CDS	11402724	11402777	.	+	0	Parent=Os02t0297600-02
Chr02	irgsp1_rep	CDS	11403165	11403239	.	+	0	Parent=Os02t0297600-02
Chr02	irgsp1_rep	CDS	11403329	11403364	.	+	0	Parent=Os02t0297600-02
Chr02	irgsp1_rep	CDS	11403479	11403592	.	+	0	Parent=Os02t0297600-02
Chr02	irgsp1_rep	three_prime_UTR	11403593	11403966	.	+	.	Parent=Os02t0297600-02
Chr02	irgsp1_rep	mRNA	11402103	11403886	.	-	.	ID=Os02t0297666-00;Name=Os02t0297666-00;Locus_id=Os02g0297666;Note=Hypothetical gene.;Transcript_evidence=BT016843 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0297666-00;KEGG=Os02t0297666-00
Chr02	irgsp1_rep	five_prime_UTR	11403459	11403886	.	-	.	Parent=Os02t0297666-00
Chr02	irgsp1_rep	five_prime_UTR	11403226	11403255	.	-	.	Parent=Os02t0297666-00
Chr02	irgsp1_rep	CDS	11403163	11403225	.	-	0	Parent=Os02t0297666-00
Chr02	irgsp1_rep	CDS	11402710	11402775	.	-	0	Parent=Os02t0297666-00
Chr02	irgsp1_rep	CDS	11402567	11402635	.	-	0	Parent=Os02t0297666-00
Chr02	irgsp1_rep	CDS	11402450	11402483	.	-	0	Parent=Os02t0297666-00
Chr02	irgsp1_rep	CDS	11402351	11402364	.	-	2	Parent=Os02t0297666-00
Chr02	irgsp1_rep	three_prime_UTR	11402254	11402350	.	-	.	Parent=Os02t0297666-00
Chr02	irgsp1_rep	three_prime_UTR	11402103	11402170	.	-	.	Parent=Os02t0297666-00
Chr02	irgsp1_rep	mRNA	11414988	11416688	.	-	.	ID=Os02t0297900-00;Name=Os02t0297900-00;Locus_id=Os02g0297900;Oryzabase Gene Symbol Synonym(s)=OsFbox083%2C OsFbox83%2C Os_F0360;Oryzabase Gene Name Synonym(s)=F-box protein 83;Note=Similar to F-box domain containing protein%2C expressed.;Transcript_evidence=AK363850 (DDBJ);ORF_evidence=Q2QQE3 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);Oryzabase=16878;TENOR=Os02t0297900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	11416236	11416688	.	-	0	Parent=Os02t0297900-00
Chr02	irgsp1_rep	three_prime_UTR	11415748	11416235	.	-	.	Parent=Os02t0297900-00
Chr02	irgsp1_rep	three_prime_UTR	11415501	11415653	.	-	.	Parent=Os02t0297900-00
Chr02	irgsp1_rep	three_prime_UTR	11414988	11415394	.	-	.	Parent=Os02t0297900-00
Chr02	irgsp1_rep	mRNA	11427544	11431289	.	-	.	ID=Os02t0298100-01;Name=Os02t0298100-01;Locus_id=Os02g0298100;Note=Hypothetical protein.;Transcript_evidence=AK099932 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013118N10;Expression=AK099932;TENOR=Os02t0298100-01;KEGG=Os02t0298100-01
Chr02	irgsp1_rep	five_prime_UTR	11430907	11431289	.	-	.	Parent=Os02t0298100-01
Chr02	irgsp1_rep	five_prime_UTR	11429650	11430790	.	-	.	Parent=Os02t0298100-01
Chr02	irgsp1_rep	CDS	11429272	11429649	.	-	0	Parent=Os02t0298100-01
Chr02	irgsp1_rep	three_prime_UTR	11427544	11429271	.	-	.	Parent=Os02t0298100-01
Chr02	irgsp1_rep	mRNA	11427608	11429897	.	+	.	ID=Os02t0298200-01;Name=Os02t0298200-01;Locus_id=Os02g0298200;Note=Similar to Resistance protein candidate (Fragment).;Transcript_evidence=AK108666 (DDBJ%2C Best hit);ORF_evidence=NP_001147990.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-148-G04;Expression=AK108666;TENOR=Os02t0298200-01;KEGG=Os02t0298200-01
Chr02	irgsp1_rep	five_prime_UTR	11427608	11427866	.	+	.	Parent=Os02t0298200-01
Chr02	irgsp1_rep	CDS	11427867	11428265	.	+	0	Parent=Os02t0298200-01
Chr02	irgsp1_rep	CDS	11428343	11429719	.	+	0	Parent=Os02t0298200-01
Chr02	irgsp1_rep	three_prime_UTR	11429720	11429897	.	+	.	Parent=Os02t0298200-01
Chr02	irgsp1_rep	mRNA	11470577	11474781	.	-	.	ID=Os02t0298900-01;Name=Os02t0298900-01;Locus_id=Os02g0298900;Note=Hypothetical gene.;Transcript_evidence=AK063823 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-122-A05;Expression=AK063823;TENOR=Os02t0298900-01;KEGG=Os02t0298900-01
Chr02	irgsp1_rep	five_prime_UTR	11474678	11474781	.	-	.	Parent=Os02t0298900-01
Chr02	irgsp1_rep	CDS	11474447	11474677	.	-	0	Parent=Os02t0298900-01
Chr02	irgsp1_rep	three_prime_UTR	11474389	11474446	.	-	.	Parent=Os02t0298900-01
Chr02	irgsp1_rep	three_prime_UTR	11474145	11474299	.	-	.	Parent=Os02t0298900-01
Chr02	irgsp1_rep	three_prime_UTR	11470577	11470740	.	-	.	Parent=Os02t0298900-01
Chr02	irgsp1_rep	mRNA	11473863	11474757	.	-	.	ID=Os02t0298900-02;Name=Os02t0298900-02;Locus_id=Os02g0298900;Note=Hypothetical gene.;Transcript_evidence=AK121659 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033064A12;Expression=AK121659;TENOR=Os02t0298900-02;KEGG=Os02t0298900-02
Chr02	irgsp1_rep	five_prime_UTR	11474678	11474757	.	-	.	Parent=Os02t0298900-02
Chr02	irgsp1_rep	CDS	11474447	11474677	.	-	0	Parent=Os02t0298900-02
Chr02	irgsp1_rep	three_prime_UTR	11474403	11474446	.	-	.	Parent=Os02t0298900-02
Chr02	irgsp1_rep	three_prime_UTR	11473863	11474299	.	-	.	Parent=Os02t0298900-02
Chr02	irgsp1_rep	mRNA	11471100	11473389	.	+	.	ID=Os02t0299000-00;Name=Os02t0299000-00;Locus_id=Os02g0299000;Note=Similar to lectin-like receptor kinase 7.;Transcript_evidence=AK108666 (DDBJ%2C Secondary hit);ORF_evidence=NP_001147990.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os02t0299000-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	11471100	11471352	.	+	.	Parent=Os02t0299000-00
Chr02	irgsp1_rep	CDS	11471353	11471751	.	+	0	Parent=Os02t0299000-00
Chr02	irgsp1_rep	CDS	11471829	11472042	.	+	0	Parent=Os02t0299000-00
Chr02	irgsp1_rep	CDS	11472049	11473211	.	+	2	Parent=Os02t0299000-00
Chr02	irgsp1_rep	three_prime_UTR	11473212	11473389	.	+	.	Parent=Os02t0299000-00
Chr02	irgsp1_rep	mRNA	11478306	11483976	.	+	.	ID=Os02t0299200-01;Name=Os02t0299200-01;Locus_id=Os02g0299200;Note=IQ calmodulin-binding region domain containing protein.;Transcript_evidence=AK105486 (DDBJ%2C Best hit);ORF_evidence=B8AFW8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);NIAS_FLcDNA=001-127-B08;Expression=AK105486;TENOR=Os02t0299200-01;KEGG=Os02t0299200-01
Chr02	irgsp1_rep	five_prime_UTR	11478306	11478336	.	+	.	Parent=Os02t0299200-01
Chr02	irgsp1_rep	CDS	11478337	11478429	.	+	0	Parent=Os02t0299200-01
Chr02	irgsp1_rep	CDS	11478536	11478877	.	+	0	Parent=Os02t0299200-01
Chr02	irgsp1_rep	CDS	11482758	11483285	.	+	0	Parent=Os02t0299200-01
Chr02	irgsp1_rep	CDS	11483366	11483860	.	+	0	Parent=Os02t0299200-01
Chr02	irgsp1_rep	three_prime_UTR	11483861	11483976	.	+	.	Parent=Os02t0299200-01
Chr02	irgsp1_rep	mRNA	11484330	11488301	.	-	.	ID=Os02t0299300-01;Name=Os02t0299300-01;Locus_id=Os02g0299300;Note=Similar to cDNA clone:J023112L03%2C full insert sequence.;Transcript_evidence=AK066972 (DDBJ%2C Best hit);ORF_evidence=B7EJU0 (UniProt);NIAS_FLcDNA=J013089I06;TENOR=Os02t0299300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	11488170	11488301	.	-	.	Parent=Os02t0299300-01
Chr02	irgsp1_rep	CDS	11488015	11488169	.	-	0	Parent=Os02t0299300-01
Chr02	irgsp1_rep	CDS	11487524	11487599	.	-	1	Parent=Os02t0299300-01
Chr02	irgsp1_rep	CDS	11487412	11487489	.	-	0	Parent=Os02t0299300-01
Chr02	irgsp1_rep	three_prime_UTR	11487204	11487411	.	-	.	Parent=Os02t0299300-01
Chr02	irgsp1_rep	three_prime_UTR	11486996	11487096	.	-	.	Parent=Os02t0299300-01
Chr02	irgsp1_rep	three_prime_UTR	11485969	11486064	.	-	.	Parent=Os02t0299300-01
Chr02	irgsp1_rep	three_prime_UTR	11485825	11485878	.	-	.	Parent=Os02t0299300-01
Chr02	irgsp1_rep	three_prime_UTR	11485393	11485541	.	-	.	Parent=Os02t0299300-01
Chr02	irgsp1_rep	three_prime_UTR	11485192	11485309	.	-	.	Parent=Os02t0299300-01
Chr02	irgsp1_rep	three_prime_UTR	11484980	11485067	.	-	.	Parent=Os02t0299300-01
Chr02	irgsp1_rep	three_prime_UTR	11484330	11484892	.	-	.	Parent=Os02t0299300-01
Chr02	irgsp1_rep	mRNA	11502198	11507170	.	-	.	ID=Os02t0299600-01;Name=Os02t0299600-01;Locus_id=Os02g0299600;Note=Protein of unknown function DUF1242 family protein.;Transcript_evidence=AK069297 (DDBJ%2C Best hit);ORF_evidence=B6U611 (UniProt);InterPro=Protein of unknown function DUF1242 (IPR009653);NIAS_FLcDNA=J023015E18;Expression=AK069297;TENOR=Os02t0299600-01;KEGG=Os02t0299600-01
Chr02	irgsp1_rep	five_prime_UTR	11507068	11507170	.	-	.	Parent=Os02t0299600-01
Chr02	irgsp1_rep	CDS	11507065	11507067	.	-	0	Parent=Os02t0299600-01
Chr02	irgsp1_rep	CDS	11506789	11506895	.	-	0	Parent=Os02t0299600-01
Chr02	irgsp1_rep	CDS	11505386	11505420	.	-	1	Parent=Os02t0299600-01
Chr02	irgsp1_rep	CDS	11502518	11502585	.	-	2	Parent=Os02t0299600-01
Chr02	irgsp1_rep	three_prime_UTR	11502198	11502517	.	-	.	Parent=Os02t0299600-01
Chr02	irgsp1_rep	mRNA	11550943	11554343	.	+	.	ID=Os02t0300500-00;Name=Os02t0300500-00;Locus_id=Os02g0300500;Note=Disease resistance protein domain containing protein.;Transcript_evidence=tplb0042l08 (Wheat FLcDNA);ORF_evidence=Q6K4R1 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os02t0300500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	11550943	11550974	.	+	.	Parent=Os02t0300500-00
Chr02	irgsp1_rep	CDS	11550975	11551813	.	+	0	Parent=Os02t0300500-00
Chr02	irgsp1_rep	CDS	11552507	11554343	.	+	1	Parent=Os02t0300500-00
Chr02	irgsp1_rep	mRNA	11568279	11569112	.	+	.	ID=Os02t0300700-01;Name=Os02t0300700-01;Locus_id=Os02g0300700;CGSNL Gene Symbol=EIF1A1;CGSNL Gene Name=EUKARYOTIC INITIATION FACTOR 1A-1;Oryzabase Gene Symbol Synonym(s)=OseIF1A-1;Oryzabase Gene Name Synonym(s)=translation initiation factor 1A-1%2C eukaryotic initiation factor 1A-1;Note=Similar to Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C).;Transcript_evidence=AK069347 (DDBJ%2C Best hit);ORF_evidence=P47815 (UniProt);GO=Biological Process: translational initiation (GO:0006413),Molecular Function: RNA binding (GO:0003723),Molecular Function: translation initiation factor activity (GO:0003743);InterPro=Translation initiation factor 1A (eIF-1A) (IPR001253),RNA-binding domain%2C S1%2C IF1 type (IPR006196),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),Translation initiation factor 1A (eIF-1A)%2C conserved site (IPR018104);NIAS_FLcDNA=J023012P17;Oryzabase=15689;Expression=AK069347;TENOR=Os02t0300700-01;KEGG=Os02t0300700-01
Chr02	irgsp1_rep	five_prime_UTR	11568279	11568318	.	+	.	Parent=Os02t0300700-01
Chr02	irgsp1_rep	CDS	11568319	11568747	.	+	0	Parent=Os02t0300700-01
Chr02	irgsp1_rep	three_prime_UTR	11568748	11569112	.	+	.	Parent=Os02t0300700-01
Chr02	irgsp1_rep	mRNA	11577042	11577704	.	-	.	ID=Os02t0300900-00;Name=Os02t0300900-00;Locus_id=Os02g0300900;Note=Similar to Lipoxygenase.;Transcript_evidence=EU948438 (DDBJ);ORF_evidence=A2XLT7 (UniProt);TENOR=Os02t0300900-00;KEGG=Os02t0300900-00
Chr02	irgsp1_rep	CDS	11577042	11577704	.	-	0	Parent=Os02t0300900-00
Chr02	irgsp1_rep	mRNA	11578491	11583536	.	+	.	ID=Os02t0301000-01;Name=Os02t0301000-01;Locus_id=Os02g0301000;CGSNL Gene Symbol=C3H15;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15;Oryzabase Gene Symbol Synonym(s)=OsC3H15%2C OsRFPHC-3;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 15%2C RING finger protein OsRFPHC-3%2C RING-HC protein 3;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK106298 (DDBJ%2C Best hit);ORF_evidence=B6TEB9 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571),Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=002-101-C02;Oryzabase=8578;Expression=AK106298;TENOR=Os02t0301000-01;KEGG=Os02t0301000-01
Chr02	irgsp1_rep	five_prime_UTR	11578491	11578707	.	+	.	Parent=Os02t0301000-01
Chr02	irgsp1_rep	CDS	11578708	11579580	.	+	0	Parent=Os02t0301000-01
Chr02	irgsp1_rep	CDS	11583174	11583281	.	+	0	Parent=Os02t0301000-01
Chr02	irgsp1_rep	three_prime_UTR	11583282	11583536	.	+	.	Parent=Os02t0301000-01
Chr02	irgsp1_rep	mRNA	11583005	11583533	.	+	.	ID=Os02t0301000-02;Name=Os02t0301000-02;Locus_id=Os02g0301000;CGSNL Gene Symbol=C3H15;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15;Oryzabase Gene Symbol Synonym(s)=OsC3H15%2C OsRFPHC-3;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 15%2C RING finger protein OsRFPHC-3%2C RING-HC protein 3;Note=Similar to RING finger protein 113A.;Transcript_evidence=AK063049 (DDBJ%2C Best hit);ORF_evidence=B6TEB9 (UniProt);NIAS_FLcDNA=001-110-E03;Oryzabase=8578;Expression=AK063049;TENOR=Os02t0301000-02;KEGG=Os02t0301000-02
Chr02	irgsp1_rep	five_prime_UTR	11583005	11583077	.	+	.	Parent=Os02t0301000-02
Chr02	irgsp1_rep	CDS	11583078	11583281	.	+	0	Parent=Os02t0301000-02
Chr02	irgsp1_rep	three_prime_UTR	11583282	11583533	.	+	.	Parent=Os02t0301000-02
Chr02	irgsp1_rep	mRNA	11592365	11596449	.	-	.	ID=Os02t0301100-01;Name=Os02t0301100-01;Locus_id=Os02g0301100;RAP-DB Gene Symbol Synonym(s)=OsSWEET4;CGSNL Gene Symbol=SWEET4;CGSNL Gene Name=SWEET4;Oryzabase Gene Symbol Synonym(s)=OsSWEET4;Note=Ortholog of maize ZmSWEET4c%2C Hexose transporter%2C Seed filling;Transcript_evidence=AK071676,AK100174,AK104411,AK104467;ORF_evidence=Q6K4V2;GO=Cellular Component: integral component of membrane (GO:0016021);InterPro=SWEET sugar transporter (IPR004316);NIAS_FLcDNA=J023108F17,J023027A16,006-203-G12,006-301-C10;Manual Curation=June 3%2C 2019;Literature_PMID=26523777;Oryzabase=9094;TENOR=Os02t0301100-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	11596240	11596449	.	-	.	Parent=Os02t0301100-01
Chr02	irgsp1_rep	CDS	11596197	11596239	.	-	0	Parent=Os02t0301100-01
Chr02	irgsp1_rep	CDS	11595801	11595837	.	-	2	Parent=Os02t0301100-01
Chr02	irgsp1_rep	CDS	11595109	11595487	.	-	1	Parent=Os02t0301100-01
Chr02	irgsp1_rep	CDS	11594292	11594411	.	-	0	Parent=Os02t0301100-01
Chr02	irgsp1_rep	CDS	11592758	11592958	.	-	0	Parent=Os02t0301100-01
Chr02	irgsp1_rep	three_prime_UTR	11592365	11592757	.	-	.	Parent=Os02t0301100-01
Chr02	irgsp1_rep	mRNA	11663438	11668036	.	-	.	ID=Os02t0301400-01;Name=Os02t0301400-01;Locus_id=Os02g0301400;Note=Thioredoxin-like fold domain containing protein.;Transcript_evidence=AK121646 (DDBJ%2C Best hit);ORF_evidence=A2X3S4 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J033058J23;Expression=AK121646;TENOR=Os02t0301400-01;KEGG=Os02t0301400-01
Chr02	irgsp1_rep	five_prime_UTR	11667836	11668036	.	-	.	Parent=Os02t0301400-01
Chr02	irgsp1_rep	five_prime_UTR	11667373	11667393	.	-	.	Parent=Os02t0301400-01
Chr02	irgsp1_rep	CDS	11666741	11667372	.	-	0	Parent=Os02t0301400-01
Chr02	irgsp1_rep	CDS	11665769	11666654	.	-	1	Parent=Os02t0301400-01
Chr02	irgsp1_rep	three_prime_UTR	11665176	11665768	.	-	.	Parent=Os02t0301400-01
Chr02	irgsp1_rep	three_prime_UTR	11663438	11663794	.	-	.	Parent=Os02t0301400-01
Chr02	irgsp1_rep	mRNA	11668315	11669131	.	-	.	ID=Os02t0301450-00;Name=Os02t0301450-00;Locus_id=Os02g0301450;Note=Hypothetical gene.;Transcript_evidence=EU947619 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0301450-00;KEGG=Os02t0301450-00
Chr02	irgsp1_rep	five_prime_UTR	11669106	11669131	.	-	.	Parent=Os02t0301450-00
Chr02	irgsp1_rep	CDS	11668329	11669105	.	-	0	Parent=Os02t0301450-00
Chr02	irgsp1_rep	three_prime_UTR	11668315	11668328	.	-	.	Parent=Os02t0301450-00
Chr02	irgsp1_rep	mRNA	11670440	11673580	.	+	.	ID=Os02t0301500-01;Name=Os02t0301500-01;Locus_id=Os02g0301500;Note=Similar to ATP dependent RNA helicase.;Transcript_evidence=AK059339 (DDBJ%2C Best hit);ORF_evidence=B8BR58 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C ATP-dependent%2C DEAH-box type%2C conserved site (IPR002464),Helicase-associated domain (IPR007502),Domain of unknown function DUF1605 (IPR011709),DEAD-like helicase (IPR014001);NIAS_FLcDNA=001-026-B03;TENOR=Os02t0301500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	11670440	11670440	.	+	.	Parent=Os02t0301500-01
Chr02	irgsp1_rep	CDS	11670441	11671687	.	+	0	Parent=Os02t0301500-01
Chr02	irgsp1_rep	CDS	11672930	11673323	.	+	1	Parent=Os02t0301500-01
Chr02	irgsp1_rep	three_prime_UTR	11673324	11673580	.	+	.	Parent=Os02t0301500-01
Chr02	irgsp1_rep	mRNA	11685117	11686988	.	+	.	ID=Os02t0301650-00;Name=Os02t0301650-00;Locus_id=Os02g0301650;Note=Hypothetical gene.;Transcript_evidence=AK108832 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;Expression=AK108832;TENOR=Os02t0301650-00;KEGG=Os02t0301650-00
Chr02	irgsp1_rep	five_prime_UTR	11685117	11685530	.	+	.	Parent=Os02t0301650-00
Chr02	irgsp1_rep	CDS	11685531	11685919	.	+	0	Parent=Os02t0301650-00
Chr02	irgsp1_rep	CDS	11686884	11686929	.	+	1	Parent=Os02t0301650-00
Chr02	irgsp1_rep	three_prime_UTR	11686930	11686988	.	+	.	Parent=Os02t0301650-00
Chr02	irgsp1_rep	mRNA	11694823	11699013	.	+	.	ID=Os02t0301700-00;Name=Os02t0301700-00;Locus_id=Os02g0301700;Note=Similar to predicted protein.;Transcript_evidence=BT054962 (DDBJ);ORF_evidence=Q9LT41 (UniProt);InterPro=Cell differentiation%2C Rcd1-like (IPR007216);TENOR=Os02t0301700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	11694823	11694824	.	+	.	Parent=Os02t0301700-00
Chr02	irgsp1_rep	CDS	11694825	11694896	.	+	0	Parent=Os02t0301700-00
Chr02	irgsp1_rep	CDS	11695155	11695244	.	+	0	Parent=Os02t0301700-00
Chr02	irgsp1_rep	CDS	11695360	11695402	.	+	0	Parent=Os02t0301700-00
Chr02	irgsp1_rep	CDS	11695645	11695751	.	+	2	Parent=Os02t0301700-00
Chr02	irgsp1_rep	CDS	11697738	11697833	.	+	0	Parent=Os02t0301700-00
Chr02	irgsp1_rep	CDS	11698263	11698453	.	+	0	Parent=Os02t0301700-00
Chr02	irgsp1_rep	CDS	11698553	11698622	.	+	1	Parent=Os02t0301700-00
Chr02	irgsp1_rep	CDS	11698841	11698948	.	+	0	Parent=Os02t0301700-00
Chr02	irgsp1_rep	three_prime_UTR	11698949	11699013	.	+	.	Parent=Os02t0301700-00
Chr02	irgsp1_rep	mRNA	11703714	11708370	.	-	.	ID=Os02t0301800-01;Name=Os02t0301800-01;Locus_id=Os02g0301800;Note=NB-ARC domain containing protein.;Transcript_evidence=AK101276 (DDBJ%2C Best hit);ORF_evidence=Q6K4U3 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);NIAS_FLcDNA=J033033B21;TENOR=Os02t0301800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	11707326	11708370	.	-	.	Parent=Os02t0301800-01
Chr02	irgsp1_rep	five_prime_UTR	11707031	11707071	.	-	.	Parent=Os02t0301800-01
Chr02	irgsp1_rep	CDS	11706206	11707030	.	-	0	Parent=Os02t0301800-01
Chr02	irgsp1_rep	three_prime_UTR	11703714	11706205	.	-	.	Parent=Os02t0301800-01
Chr02	irgsp1_rep	mRNA	11701995	11707651	.	-	.	ID=Os02t0301800-02;Name=Os02t0301800-02;Locus_id=Os02g0301800;Note=NB-ARC domain containing protein.;Transcript_evidence=AK067818 (DDBJ%2C Best hit);ORF_evidence=Q6K4U3 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),Mannose-binding lectin (IPR001229),NB-ARC (IPR002182);NIAS_FLcDNA=J013116H12;Expression=AK067818;TENOR=Os02t0301800-02;KEGG=Os02t0301800-02
Chr02	irgsp1_rep	five_prime_UTR	11707326	11707651	.	-	.	Parent=Os02t0301800-02
Chr02	irgsp1_rep	five_prime_UTR	11707031	11707071	.	-	.	Parent=Os02t0301800-02
Chr02	irgsp1_rep	CDS	11706216	11707030	.	-	0	Parent=Os02t0301800-02
Chr02	irgsp1_rep	CDS	11702994	11704956	.	-	1	Parent=Os02t0301800-02
Chr02	irgsp1_rep	CDS	11702629	11702826	.	-	0	Parent=Os02t0301800-02
Chr02	irgsp1_rep	CDS	11702232	11702474	.	-	0	Parent=Os02t0301800-02
Chr02	irgsp1_rep	three_prime_UTR	11701995	11702231	.	-	.	Parent=Os02t0301800-02
Chr02	irgsp1_rep	mRNA	11716855	11736527	.	+	.	ID=Os02t0302200-01;Name=Os02t0302200-01;Locus_id=Os02g0302200;Note=Similar to aminotransferase family protein.;Transcript_evidence=AK243339 (DDBJ%2C Best hit);ORF_evidence=XP_002328046.1 (RefSeq);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: biosynthetic process (GO:0009058),Biological Process: 1-aminocyclopropane-1-carboxylate biosynthetic process (GO:0042218),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transaminase activity (GO:0008483),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: 1-aminocyclopropane-1-carboxylate synthase activity (GO:0016847),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=1-aminocyclopropane-1-carboxylate synthase (IPR001176),Aminotransferase%2C class I/classII (IPR004839),Tyrosine/nicotianamine aminotransferase (IPR005958),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424),Tyrosine transaminase (IPR021178);NIAS_FLcDNA=J100059G16;TENOR=Os02t0302200-01;KEGG=Os02t0302200-01 (EC:2.6.1.5)
Chr02	irgsp1_rep	five_prime_UTR	11716855	11716961	.	+	.	Parent=Os02t0302200-01
Chr02	irgsp1_rep	CDS	11716962	11717248	.	+	0	Parent=Os02t0302200-01
Chr02	irgsp1_rep	CDS	11734000	11734339	.	+	1	Parent=Os02t0302200-01
Chr02	irgsp1_rep	CDS	11734434	11734652	.	+	0	Parent=Os02t0302200-01
Chr02	irgsp1_rep	CDS	11735591	11735650	.	+	0	Parent=Os02t0302200-01
Chr02	irgsp1_rep	CDS	11735751	11736000	.	+	0	Parent=Os02t0302200-01
Chr02	irgsp1_rep	CDS	11736218	11736345	.	+	2	Parent=Os02t0302200-01
Chr02	irgsp1_rep	three_prime_UTR	11736346	11736527	.	+	.	Parent=Os02t0302200-01
Chr02	irgsp1_rep	mRNA	11731075	11731398	.	+	.	ID=Os02t0302450-00;Name=Os02t0302450-00;Locus_id=Os02g0302450;Note=Similar to cDNA%2C clone: J100059G16%2C full insert sequence.;Transcript_evidence=ab initio prediction;ORF_evidence=B7FA99 (UniProt);TENOR=Os02t0302450-00;KEGG=Os02t0302450-00 (EC:2.6.1.5)
Chr02	irgsp1_rep	CDS	11731075	11731398	.	+	0	Parent=Os02t0302450-00
Chr02	irgsp1_rep	mRNA	11737656	11741563	.	-	.	ID=Os02t0302500-00;Name=Os02t0302500-00;Locus_id=Os02g0302500;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001046627.2 (RefSeq);TENOR=Os02t0302500-00;KEGG=Os02t0302500-00
Chr02	irgsp1_rep	CDS	11741025	11741563	.	-	0	Parent=Os02t0302500-00
Chr02	irgsp1_rep	CDS	11740836	11740941	.	-	1	Parent=Os02t0302500-00
Chr02	irgsp1_rep	CDS	11737656	11737907	.	-	0	Parent=Os02t0302500-00
Chr02	irgsp1_rep	mRNA	11749122	11753711	.	+	.	ID=Os02t0302700-01;Name=Os02t0302700-01;Locus_id=Os02g0302700;CGSNL Gene Symbol=NAAT2;CGSNL Gene Name=NICOTINAMINE AMINOTRANSFERASE 2;Oryzabase Gene Symbol Synonym(s)=OsNAAT2;Oryzabase Gene Name Synonym(s)=sativa nicotianamine aminotransferase 2;Note=Similar to Nicotianamine aminotransferase A.;Transcript_evidence=AK060537 (DDBJ%2C Best hit);ORF_evidence=A9CM06 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: biosynthetic process (GO:0009058),Biological Process: 1-aminocyclopropane-1-carboxylate biosynthetic process (GO:0042218),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transaminase activity (GO:0008483),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: 1-aminocyclopropane-1-carboxylate synthase activity (GO:0016847),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=1-aminocyclopropane-1-carboxylate synthase (IPR001176),Aminotransferases%2C class-I%2C pyridoxal-phosphate-binding site (IPR004838),Aminotransferase%2C class I/classII (IPR004839),Tyrosine/nicotianamine aminotransferase (IPR005958),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424),Tyrosine transaminase (IPR021178);NIAS_FLcDNA=001-021-D11;Oryzabase=8323;Expression=AK060537;TENOR=Os02t0302700-01;KEGG=Os02t0302700-01 (EC:2.6.1.5)
Chr02	irgsp1_rep	five_prime_UTR	11749122	11749167	.	+	.	Parent=Os02t0302700-01
Chr02	irgsp1_rep	CDS	11749168	11749496	.	+	0	Parent=Os02t0302700-01
Chr02	irgsp1_rep	CDS	11750806	11751145	.	+	1	Parent=Os02t0302700-01
Chr02	irgsp1_rep	CDS	11751229	11751447	.	+	0	Parent=Os02t0302700-01
Chr02	irgsp1_rep	CDS	11751947	11752006	.	+	0	Parent=Os02t0302700-01
Chr02	irgsp1_rep	CDS	11752166	11752321	.	+	0	Parent=Os02t0302700-01
Chr02	irgsp1_rep	CDS	11752422	11752515	.	+	0	Parent=Os02t0302700-01
Chr02	irgsp1_rep	CDS	11753335	11753456	.	+	2	Parent=Os02t0302700-01
Chr02	irgsp1_rep	three_prime_UTR	11753457	11753711	.	+	.	Parent=Os02t0302700-01
Chr02	irgsp1_rep	mRNA	11758502	11762733	.	+	.	ID=Os02t0302900-01;Name=Os02t0302900-01;Locus_id=Os02g0302900;Note=Reticulon family protein.;Transcript_evidence=AK110752 (DDBJ%2C Best hit);ORF_evidence=B8AFY3 (UniProt);GO=Cellular Component: endoplasmic reticulum (GO:0005783);InterPro=Reticulon (IPR003388);NIAS_FLcDNA=002-170-G08;Expression=AK110752;TENOR=Os02t0302900-01;KEGG=Os02t0302900-01
Chr02	irgsp1_rep	five_prime_UTR	11758502	11758561	.	+	.	Parent=Os02t0302900-01
Chr02	irgsp1_rep	CDS	11758562	11759162	.	+	0	Parent=Os02t0302900-01
Chr02	irgsp1_rep	CDS	11759323	11759476	.	+	2	Parent=Os02t0302900-01
Chr02	irgsp1_rep	CDS	11759586	11759660	.	+	1	Parent=Os02t0302900-01
Chr02	irgsp1_rep	CDS	11759740	11759884	.	+	1	Parent=Os02t0302900-01
Chr02	irgsp1_rep	CDS	11759972	11760041	.	+	0	Parent=Os02t0302900-01
Chr02	irgsp1_rep	CDS	11760126	11760191	.	+	2	Parent=Os02t0302900-01
Chr02	irgsp1_rep	CDS	11760282	11760404	.	+	2	Parent=Os02t0302900-01
Chr02	irgsp1_rep	CDS	11762410	11762528	.	+	2	Parent=Os02t0302900-01
Chr02	irgsp1_rep	three_prime_UTR	11762529	11762733	.	+	.	Parent=Os02t0302900-01
Chr02	irgsp1_rep	mRNA	11767997	11768547	.	+	.	ID=Os02t0303000-01;Name=Os02t0303000-01;Locus_id=Os02g0303000;Note=Hypothetical gene.;Transcript_evidence=AK111330 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-181-E02;Expression=AK111330;TENOR=Os02t0303000-01;KEGG=Os02t0303000-01
Chr02	irgsp1_rep	five_prime_UTR	11767997	11767997	.	+	.	Parent=Os02t0303000-01
Chr02	irgsp1_rep	CDS	11767998	11768210	.	+	0	Parent=Os02t0303000-01
Chr02	irgsp1_rep	three_prime_UTR	11768211	11768547	.	+	.	Parent=Os02t0303000-01
Chr02	irgsp1_rep	mRNA	11776407	11776925	.	-	.	ID=Os02t0303200-01;Name=Os02t0303200-01;Locus_id=Os02g0303200;Note=Hypothetical protein.;Transcript_evidence=AK107731 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-132-F08;TENOR=Os02t0303200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	11776437	11776925	.	-	0	Parent=Os02t0303200-01
Chr02	irgsp1_rep	three_prime_UTR	11776407	11776436	.	-	.	Parent=Os02t0303200-01
Chr02	irgsp1_rep	mRNA	11798895	11799847	.	-	.	ID=Os02t0303500-01;Name=Os02t0303500-01;Locus_id=Os02g0303500;Note=Eggshell protein family protein.;Transcript_evidence=AK106082 (DDBJ%2C Best hit),AK059847 (DDBJ%2C Best hit);ORF_evidence=A2X3T9 (UniProt);NIAS_FLcDNA=001-207-A09,006-206-F04;Expression=AK106082;TENOR=Os02t0303500-01;KEGG=Os02t0303500-01
Chr02	irgsp1_rep	five_prime_UTR	11799813	11799847	.	-	.	Parent=Os02t0303500-01
Chr02	irgsp1_rep	CDS	11799156	11799812	.	-	0	Parent=Os02t0303500-01
Chr02	irgsp1_rep	three_prime_UTR	11798895	11799155	.	-	.	Parent=Os02t0303500-01
Chr02	irgsp1_rep	mRNA	11866004	11869802	.	-	.	ID=Os02t0304500-00;Name=Os02t0304500-00;Locus_id=Os02g0304500;Note=Similar to transposon protein.;Transcript_evidence=AK365916 (DDBJ);ORF_evidence=NP_001148044.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os02t0304500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	11869164	11869802	.	-	0	Parent=Os02t0304500-00
Chr02	irgsp1_rep	CDS	11868730	11869053	.	-	0	Parent=Os02t0304500-00
Chr02	irgsp1_rep	CDS	11866004	11866606	.	-	0	Parent=Os02t0304500-00
Chr02	irgsp1_rep	mRNA	11876336	11879831	.	+	.	ID=Os02t0304800-01;Name=Os02t0304800-01;Locus_id=Os02g0304800;Note=Hypothetical conserved gene.;Transcript_evidence=AK287737 (DDBJ%2C Best hit);ORF_evidence=B9F569 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J065143M09;TENOR=Os02t0304800-01;KEGG=Os02t0304800-01
Chr02	irgsp1_rep	five_prime_UTR	11876336	11876581	.	+	.	Parent=Os02t0304800-01
Chr02	irgsp1_rep	CDS	11876582	11878204	.	+	0	Parent=Os02t0304800-01
Chr02	irgsp1_rep	three_prime_UTR	11878205	11878727	.	+	.	Parent=Os02t0304800-01
Chr02	irgsp1_rep	three_prime_UTR	11879008	11879128	.	+	.	Parent=Os02t0304800-01
Chr02	irgsp1_rep	three_prime_UTR	11879225	11879831	.	+	.	Parent=Os02t0304800-01
Chr02	irgsp1_rep	mRNA	11882306	11885861	.	-	.	ID=Os02t0304900-01;Name=Os02t0304900-01;Locus_id=Os02g0304900;RAP-DB Gene Symbol Synonym(s)=OsDi19-4;RAP-DB Gene Name Synonym(s)=drought-induced 19-4;Oryzabase Gene Symbol Synonym(s)=OsDi19-4%2C Di19-4;Oryzabase Gene Name Synonym(s)=drought-induced 19-4%2C drought-induced 19 protein 4;Note=Drought-induced 19 family protein%2C Drought resistance%2C Positive regulation of abscisic acid (ABA) response;Transcript_evidence=AK059764,AK099304;ORF_evidence=Q6H6E6;InterPro=Protein DEHYDRATION-INDUCED 19 (IPR033347),Drought induced 19 protein type%2C zinc-binding domain (IPR008598),Protein dehydration-induced 19%2C C-terminal (IPR027935);NIAS_FLcDNA=006-203-G01, J023139M10;Manual Curation=April 27%2C 2017;Literature_PMID=27627618,25236158;Oryzabase=18579;TENOR=Os02t0304900-01;Subcellular location=nucleus (GO:0005634)
Chr02	irgsp1_rep	five_prime_UTR	11885744	11885861	.	-	.	Parent=Os02t0304900-01
Chr02	irgsp1_rep	CDS	11885617	11885743	.	-	0	Parent=Os02t0304900-01
Chr02	irgsp1_rep	CDS	11884831	11884970	.	-	2	Parent=Os02t0304900-01
Chr02	irgsp1_rep	CDS	11883616	11883693	.	-	0	Parent=Os02t0304900-01
Chr02	irgsp1_rep	CDS	11883243	11883526	.	-	0	Parent=Os02t0304900-01
Chr02	irgsp1_rep	CDS	11882669	11882777	.	-	1	Parent=Os02t0304900-01
Chr02	irgsp1_rep	three_prime_UTR	11882306	11882668	.	-	.	Parent=Os02t0304900-01
Chr02	irgsp1_rep	mRNA	11935318	11941766	.	-	.	ID=Os02t0305600-01;Name=Os02t0305600-01;Locus_id=Os02g0305600;Note=Spectrin repeat containing protein.;Transcript_evidence=AK102077 (DDBJ%2C Best hit);ORF_evidence=B8AFZ4 (UniProt);NIAS_FLcDNA=J033082I12;Expression=AK102077;TENOR=Os02t0305600-01;KEGG=Os02t0305600-01
Chr02	irgsp1_rep	five_prime_UTR	11941687	11941766	.	-	.	Parent=Os02t0305600-01
Chr02	irgsp1_rep	CDS	11941431	11941686	.	-	0	Parent=Os02t0305600-01
Chr02	irgsp1_rep	CDS	11939692	11939819	.	-	2	Parent=Os02t0305600-01
Chr02	irgsp1_rep	CDS	11938709	11938762	.	-	0	Parent=Os02t0305600-01
Chr02	irgsp1_rep	CDS	11938051	11938164	.	-	0	Parent=Os02t0305600-01
Chr02	irgsp1_rep	CDS	11937427	11937495	.	-	0	Parent=Os02t0305600-01
Chr02	irgsp1_rep	CDS	11937266	11937346	.	-	0	Parent=Os02t0305600-01
Chr02	irgsp1_rep	CDS	11936591	11936710	.	-	0	Parent=Os02t0305600-01
Chr02	irgsp1_rep	CDS	11936070	11936228	.	-	0	Parent=Os02t0305600-01
Chr02	irgsp1_rep	CDS	11935659	11935739	.	-	0	Parent=Os02t0305600-01
Chr02	irgsp1_rep	CDS	11935498	11935572	.	-	0	Parent=Os02t0305600-01
Chr02	irgsp1_rep	three_prime_UTR	11935318	11935497	.	-	.	Parent=Os02t0305600-01
Chr02	irgsp1_rep	mRNA	11961696	11967870	.	+	.	ID=Os02t0305700-01;Name=Os02t0305700-01;Locus_id=Os02g0305700;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=AK072860 (DDBJ%2C Best hit);ORF_evidence=B6TWZ9 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),CLASP N-terminal domain (IPR024395);NIAS_FLcDNA=J023143I03;TENOR=Os02t0305700-01
Chr02	irgsp1_rep	five_prime_UTR	11961696	11961998	.	+	.	Parent=Os02t0305700-01
Chr02	irgsp1_rep	five_prime_UTR	11965476	11965483	.	+	.	Parent=Os02t0305700-01
Chr02	irgsp1_rep	CDS	11965484	11965735	.	+	0	Parent=Os02t0305700-01
Chr02	irgsp1_rep	CDS	11965834	11965940	.	+	0	Parent=Os02t0305700-01
Chr02	irgsp1_rep	CDS	11966249	11966381	.	+	1	Parent=Os02t0305700-01
Chr02	irgsp1_rep	CDS	11966490	11966684	.	+	0	Parent=Os02t0305700-01
Chr02	irgsp1_rep	CDS	11967234	11967587	.	+	0	Parent=Os02t0305700-01
Chr02	irgsp1_rep	three_prime_UTR	11967588	11967870	.	+	.	Parent=Os02t0305700-01
Chr02	irgsp1_rep	mRNA	11961733	11967967	.	+	.	ID=Os02t0305700-02;Name=Os02t0305700-02;Locus_id=Os02g0305700;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=AK099254 (DDBJ%2C Best hit);ORF_evidence=B6TWZ9 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),CLASP N-terminal domain (IPR024395);NIAS_FLcDNA=J013163I06;TENOR=Os02t0305700-02
Chr02	irgsp1_rep	five_prime_UTR	11961733	11961998	.	+	.	Parent=Os02t0305700-02
Chr02	irgsp1_rep	five_prime_UTR	11965476	11965483	.	+	.	Parent=Os02t0305700-02
Chr02	irgsp1_rep	CDS	11965484	11965735	.	+	0	Parent=Os02t0305700-02
Chr02	irgsp1_rep	CDS	11965834	11965940	.	+	0	Parent=Os02t0305700-02
Chr02	irgsp1_rep	CDS	11966249	11966381	.	+	1	Parent=Os02t0305700-02
Chr02	irgsp1_rep	CDS	11966490	11966684	.	+	0	Parent=Os02t0305700-02
Chr02	irgsp1_rep	CDS	11967234	11967587	.	+	0	Parent=Os02t0305700-02
Chr02	irgsp1_rep	three_prime_UTR	11967588	11967967	.	+	.	Parent=Os02t0305700-02
Chr02	irgsp1_rep	mRNA	11944408	11949922	.	+	.	ID=Os02t0305800-00;Name=Os02t0305800-00;Locus_id=Os02g0305800;Note=EKC/KEOPS complex%2C subunit Pcc1 domain containing protein.;Transcript_evidence=AK066730 (DDBJ%2C Best hit);ORF_evidence=NP_001172913.1 (RefSeq);InterPro=EKC/KEOPS complex%2C subunit Pcc1 (IPR015419);NIAS_FLcDNA=J013075C07;TENOR=Os02t0305800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	11944408	11944673	.	+	.	Parent=Os02t0305800-00
Chr02	irgsp1_rep	five_prime_UTR	11948143	11948150	.	+	.	Parent=Os02t0305800-00
Chr02	irgsp1_rep	CDS	11948151	11948206	.	+	0	Parent=Os02t0305800-00
Chr02	irgsp1_rep	CDS	11949252	11949324	.	+	1	Parent=Os02t0305800-00
Chr02	irgsp1_rep	CDS	11949447	11949502	.	+	0	Parent=Os02t0305800-00
Chr02	irgsp1_rep	CDS	11949594	11949720	.	+	1	Parent=Os02t0305800-00
Chr02	irgsp1_rep	three_prime_UTR	11949721	11949922	.	+	.	Parent=Os02t0305800-00
Chr02	irgsp1_rep	mRNA	11968238	11968736	.	-	.	ID=Os02t0305950-00;Name=Os02t0305950-00;Locus_id=Os02g0305950;CGSNL Gene Symbol=SAUR7;CGSNL Gene Name=SMALL AUXIN-UP RNA 7;Oryzabase Gene Symbol Synonym(s)=OsSAUR7;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 7;Note=Similar to calmodulin binding protein.;Transcript_evidence=tplb0019a16 (Wheat FLcDNA);ORF_evidence=NP_001149909.1 (RefSeq);InterPro=Auxin responsive SAUR protein (IPR003676);Oryzabase=9132;TENOR=Os02t0305950-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	11968305	11968736	.	-	0	Parent=Os02t0305950-00
Chr02	irgsp1_rep	three_prime_UTR	11968238	11968304	.	-	.	Parent=Os02t0305950-00
Chr02	irgsp1_rep	mRNA	11970612	11979811	.	+	.	ID=Os02t0306100-00;Name=Os02t0306100-00;Locus_id=Os02g0306100;Note=Similar to cation cation antiporter.;Transcript_evidence=AK066324 (DDBJ%2C Secondary hit);ORF_evidence=NP_001148426.1 (RefSeq);InterPro=Vesicle transport protein%2C Use1 (IPR019150);TENOR=Os02t0306100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	11970612	11970835	.	+	.	Parent=Os02t0306100-00
Chr02	irgsp1_rep	five_prime_UTR	11971120	11971137	.	+	.	Parent=Os02t0306100-00
Chr02	irgsp1_rep	CDS	11971138	11971221	.	+	0	Parent=Os02t0306100-00
Chr02	irgsp1_rep	CDS	11971502	11971569	.	+	0	Parent=Os02t0306100-00
Chr02	irgsp1_rep	CDS	11972467	11972539	.	+	1	Parent=Os02t0306100-00
Chr02	irgsp1_rep	CDS	11972756	11972869	.	+	0	Parent=Os02t0306100-00
Chr02	irgsp1_rep	three_prime_UTR	11972870	11972937	.	+	.	Parent=Os02t0306100-00
Chr02	irgsp1_rep	three_prime_UTR	11979692	11979811	.	+	.	Parent=Os02t0306100-00
Chr02	irgsp1_rep	mRNA	11974329	11976267	.	+	.	ID=Os02t0306250-00;Name=Os02t0306250-00;Locus_id=Os02g0306250;Note=EKC/KEOPS complex%2C subunit Pcc1 domain containing protein.;Transcript_evidence=AK058382 (DDBJ%2C Secondary hit);ORF_evidence=NP_001172915.1 (RefSeq);InterPro=EKC/KEOPS complex%2C subunit Pcc1 (IPR015419);TENOR=Os02t0306250-00
Chr02	irgsp1_rep	five_prime_UTR	11974329	11974516	.	+	.	Parent=Os02t0306250-00
Chr02	irgsp1_rep	five_prime_UTR	11975568	11975640	.	+	.	Parent=Os02t0306250-00
Chr02	irgsp1_rep	five_prime_UTR	11975719	11975726	.	+	.	Parent=Os02t0306250-00
Chr02	irgsp1_rep	CDS	11975727	11975818	.	+	0	Parent=Os02t0306250-00
Chr02	irgsp1_rep	CDS	11975910	11976036	.	+	1	Parent=Os02t0306250-00
Chr02	irgsp1_rep	three_prime_UTR	11976037	11976267	.	+	.	Parent=Os02t0306250-00
Chr02	irgsp1_rep	mRNA	11997254	12002625	.	-	.	ID=Os02t0306401-00;Name=Os02t0306401-00;Locus_id=Os02g0306401;CGSNL Gene Symbol=NAAT1;CGSNL Gene Name=NICOTINAMINE AMINOTRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=OsNAAT1;Oryzabase Gene Name Synonym(s)=sativa nicotianamine aminotransferase 1%2C nicotianamine aminotransferase;Note=Similar to Nicotianamine aminotransferase A.;Transcript_evidence=AB182275 (DDBJ%2C Best hit);ORF_evidence=Q9ST02 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: biosynthetic process (GO:0009058),Biological Process: 1-aminocyclopropane-1-carboxylate biosynthetic process (GO:0042218),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transaminase activity (GO:0008483),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: 1-aminocyclopropane-1-carboxylate synthase activity (GO:0016847),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=1-aminocyclopropane-1-carboxylate synthase (IPR001176),Aminotransferase%2C class I/classII (IPR004839),Tyrosine/nicotianamine aminotransferase (IPR005958),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424),Tyrosine transaminase (IPR021178);Oryzabase=8322;TENOR=Os02t0306401-00;KEGG=Os02t0306401-00 (EC:2.6.1.5)
Chr02	irgsp1_rep	CDS	12002144	12002625	.	-	0	Parent=Os02t0306401-00
Chr02	irgsp1_rep	CDS	11999942	12000281	.	-	1	Parent=Os02t0306401-00
Chr02	irgsp1_rep	CDS	11999637	11999855	.	-	0	Parent=Os02t0306401-00
Chr02	irgsp1_rep	CDS	11999484	11999543	.	-	0	Parent=Os02t0306401-00
Chr02	irgsp1_rep	CDS	11998781	11998936	.	-	0	Parent=Os02t0306401-00
Chr02	irgsp1_rep	CDS	11998415	11998508	.	-	0	Parent=Os02t0306401-00
Chr02	irgsp1_rep	CDS	11997254	11997387	.	-	2	Parent=Os02t0306401-00
Chr02	irgsp1_rep	mRNA	12008815	12015423	.	-	.	ID=Os02t0306550-00;Name=Os02t0306550-00;Locus_id=Os02g0306550;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9F576 (UniProt);TENOR=Os02t0306550-00
Chr02	irgsp1_rep	CDS	12015132	12015423	.	-	0	Parent=Os02t0306550-00
Chr02	irgsp1_rep	CDS	12014839	12014966	.	-	2	Parent=Os02t0306550-00
Chr02	irgsp1_rep	CDS	12014306	12014359	.	-	0	Parent=Os02t0306550-00
Chr02	irgsp1_rep	CDS	12013231	12013344	.	-	0	Parent=Os02t0306550-00
Chr02	irgsp1_rep	CDS	12012777	12012884	.	-	0	Parent=Os02t0306550-00
Chr02	irgsp1_rep	CDS	12011333	12011446	.	-	0	Parent=Os02t0306550-00
Chr02	irgsp1_rep	CDS	12008815	12008871	.	-	0	Parent=Os02t0306550-00
Chr02	irgsp1_rep	mRNA	12009034	12009419	.	-	.	ID=Os02t0306600-01;Name=Os02t0306600-01;Locus_id=Os02g0306600;Note=Non-protein coding transcript.;Transcript_evidence=AK058816 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-003-F06;TENOR=Os02t0306600-01
Chr02	irgsp1_rep	exon	12009034	12009419	.	-	.	Parent=Os02t0306600-01
Chr02	irgsp1_rep	mRNA	12019128	12020457	.	-	.	ID=Os02t0306801-00;Name=Os02t0306801-00;Locus_id=Os02g0306801;Note=Hypothetical gene.;Transcript_evidence=EU943056 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0306801-00
Chr02	irgsp1_rep	five_prime_UTR	12019989	12020457	.	-	.	Parent=Os02t0306801-00
Chr02	irgsp1_rep	CDS	12019966	12019988	.	-	0	Parent=Os02t0306801-00
Chr02	irgsp1_rep	CDS	12019128	12019382	.	-	1	Parent=Os02t0306801-00
Chr02	irgsp1_rep	mRNA	12019034	12023287	.	+	.	ID=Os02t0306900-01;Name=Os02t0306900-01;Locus_id=Os02g0306900;Oryzabase Gene Symbol Synonym(s)=OsDjB4;Oryzabase Gene Name Synonym(s)=DnaJ domain protein B4;Note=Similar to DnaJ-like protein.;Transcript_evidence=AK100011 (DDBJ%2C Best hit),AK070441 (DDBJ%2C Best hit);ORF_evidence=A2Q505 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Chaperone DnaJ%2C C-terminal (IPR002939),Heat shock protein DnaJ (IPR003095),HSP40/DnaJ peptide-binding (IPR008971),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=J013139E23,J023053N20;Oryzabase=12153;Expression=AK100011;TENOR=Os02t0306900-01;KEGG=Os02t0306900-01
Chr02	irgsp1_rep	five_prime_UTR	12019034	12019159	.	+	.	Parent=Os02t0306900-01
Chr02	irgsp1_rep	CDS	12019160	12019324	.	+	0	Parent=Os02t0306900-01
Chr02	irgsp1_rep	CDS	12020008	12020453	.	+	0	Parent=Os02t0306900-01
Chr02	irgsp1_rep	CDS	12022663	12023101	.	+	1	Parent=Os02t0306900-01
Chr02	irgsp1_rep	three_prime_UTR	12023102	12023287	.	+	.	Parent=Os02t0306900-01
Chr02	irgsp1_rep	mRNA	12023919	12034641	.	-	.	ID=Os02t0307000-01;Name=Os02t0307000-01;Locus_id=Os02g0307000;Note=Guanylate-binding protein family protein.;Transcript_evidence=AK069068 (DDBJ%2C Best hit);ORF_evidence=NP_199419.2 (RefSeq);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Guanylate-binding protein%2C C-terminal (IPR003191),Guanylate-binding protein%2C N-terminal (IPR015894);NIAS_FLcDNA=J023007H24;Expression=AK069068;TENOR=Os02t0307000-01;KEGG=Os02t0307000-01
Chr02	irgsp1_rep	five_prime_UTR	12034530	12034641	.	-	.	Parent=Os02t0307000-01
Chr02	irgsp1_rep	CDS	12034224	12034529	.	-	0	Parent=Os02t0307000-01
Chr02	irgsp1_rep	CDS	12033099	12033260	.	-	0	Parent=Os02t0307000-01
Chr02	irgsp1_rep	CDS	12031847	12031912	.	-	0	Parent=Os02t0307000-01
Chr02	irgsp1_rep	CDS	12030277	12030420	.	-	0	Parent=Os02t0307000-01
Chr02	irgsp1_rep	CDS	12030074	12030187	.	-	0	Parent=Os02t0307000-01
Chr02	irgsp1_rep	CDS	12029882	12029983	.	-	0	Parent=Os02t0307000-01
Chr02	irgsp1_rep	CDS	12029457	12029642	.	-	0	Parent=Os02t0307000-01
Chr02	irgsp1_rep	CDS	12029056	12029145	.	-	0	Parent=Os02t0307000-01
Chr02	irgsp1_rep	CDS	12028851	12028985	.	-	0	Parent=Os02t0307000-01
Chr02	irgsp1_rep	CDS	12027426	12027548	.	-	0	Parent=Os02t0307000-01
Chr02	irgsp1_rep	CDS	12026704	12026789	.	-	0	Parent=Os02t0307000-01
Chr02	irgsp1_rep	CDS	12025466	12026078	.	-	1	Parent=Os02t0307000-01
Chr02	irgsp1_rep	CDS	12025312	12025389	.	-	0	Parent=Os02t0307000-01
Chr02	irgsp1_rep	CDS	12024172	12025215	.	-	0	Parent=Os02t0307000-01
Chr02	irgsp1_rep	three_prime_UTR	12023919	12024171	.	-	.	Parent=Os02t0307000-01
Chr02	irgsp1_rep	mRNA	12031091	12034140	.	+	.	ID=Os02t0307050-01;Name=Os02t0307050-01;Locus_id=Os02g0307050;Note=Hypothetical gene.;Transcript_evidence=AK288651 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090056M14;TENOR=Os02t0307050-01;KEGG=Os02t0307050-01
Chr02	irgsp1_rep	five_prime_UTR	12031091	12033880	.	+	.	Parent=Os02t0307050-01
Chr02	irgsp1_rep	CDS	12033881	12034114	.	+	0	Parent=Os02t0307050-01
Chr02	irgsp1_rep	three_prime_UTR	12034115	12034140	.	+	.	Parent=Os02t0307050-01
Chr02	irgsp1_rep	mRNA	12039257	12046981	.	-	.	ID=Os02t0307075-00;Name=Os02t0307075-00;Locus_id=Os02g0307075;Note=Conserved hypothetical protein.;Transcript_evidence=AK353760 (DDBJ);ORF_evidence=B8AG72 (UniProt);TENOR=Os02t0307075-00
Chr02	irgsp1_rep	five_prime_UTR	12046921	12046981	.	-	.	Parent=Os02t0307075-00
Chr02	irgsp1_rep	CDS	12046554	12046920	.	-	0	Parent=Os02t0307075-00
Chr02	irgsp1_rep	CDS	12042592	12042923	.	-	2	Parent=Os02t0307075-00
Chr02	irgsp1_rep	three_prime_UTR	12042569	12042591	.	-	.	Parent=Os02t0307075-00
Chr02	irgsp1_rep	three_prime_UTR	12040021	12040423	.	-	.	Parent=Os02t0307075-00
Chr02	irgsp1_rep	three_prime_UTR	12039257	12039964	.	-	.	Parent=Os02t0307075-00
Chr02	irgsp1_rep	mRNA	12054771	12057601	.	+	.	ID=Os02t0307200-01;Name=Os02t0307200-01;Locus_id=Os02g0307200;Oryzabase Gene Symbol Synonym(s)=OsWD40-42;Note=Similar to transducin family protein / WD-40 repeat family protein.;Transcript_evidence=AK241010 (DDBJ%2C Best hit);ORF_evidence=NP_001031099.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J065053I11;Oryzabase=10723;TENOR=Os02t0307200-01;KEGG=Os02t0307200-01
Chr02	irgsp1_rep	five_prime_UTR	12054771	12054832	.	+	.	Parent=Os02t0307200-01
Chr02	irgsp1_rep	CDS	12054833	12054985	.	+	0	Parent=Os02t0307200-01
Chr02	irgsp1_rep	CDS	12055145	12055402	.	+	0	Parent=Os02t0307200-01
Chr02	irgsp1_rep	CDS	12055515	12055679	.	+	0	Parent=Os02t0307200-01
Chr02	irgsp1_rep	three_prime_UTR	12055680	12057601	.	+	.	Parent=Os02t0307200-01
Chr02	irgsp1_rep	mRNA	12057458	12059380	.	-	.	ID=Os02t0307300-01;Name=Os02t0307300-01;Locus_id=Os02g0307300;Note=Hypothetical conserved gene.;Transcript_evidence=AK288650 (DDBJ%2C Best hit);ORF_evidence=Q6Z0X0 (UniProt);NIAS_FLcDNA=J090056L24;TENOR=Os02t0307300-01;KEGG=Os02t0307300-01
Chr02	irgsp1_rep	five_prime_UTR	12059267	12059380	.	-	.	Parent=Os02t0307300-01
Chr02	irgsp1_rep	CDS	12058724	12059266	.	-	0	Parent=Os02t0307300-01
Chr02	irgsp1_rep	three_prime_UTR	12057458	12058723	.	-	.	Parent=Os02t0307300-01
Chr02	irgsp1_rep	mRNA	12065293	12068115	.	-	.	ID=Os02t0307400-00;Name=Os02t0307400-00;Locus_id=Os02g0307400;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=AK353760 (DDBJ);ORF_evidence=B8AG72 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);TENOR=Os02t0307400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	12067522	12068115	.	-	0	Parent=Os02t0307400-00
Chr02	irgsp1_rep	three_prime_UTR	12067095	12067521	.	-	.	Parent=Os02t0307400-00
Chr02	irgsp1_rep	three_prime_UTR	12065662	12066575	.	-	.	Parent=Os02t0307400-00
Chr02	irgsp1_rep	three_prime_UTR	12065293	12065597	.	-	.	Parent=Os02t0307400-00
Chr02	irgsp1_rep	mRNA	12079377	12079958	.	-	.	ID=Os02t0307700-00;Name=Os02t0307700-00;Locus_id=Os02g0307700;Note=Similar to RDG2A.;Transcript_evidence=ab initio prediction;ORF_evidence=E2FER5 (UniProt);TENOR=Os02t0307700-00
Chr02	irgsp1_rep	CDS	12079377	12079958	.	-	0	Parent=Os02t0307700-00
Chr02	irgsp1_rep	mRNA	12086017	12089349	.	+	.	ID=Os02t0307800-01;Name=Os02t0307800-01;Locus_id=Os02g0307800;Note=Protein of unknown function DUF3082 domain containing protein.;Transcript_evidence=AK065304 (DDBJ%2C Best hit);ORF_evidence=B8AG73 (UniProt);InterPro=Protein of unknown function DUF3082 (IPR021434);NIAS_FLcDNA=J013002O01;Expression=AK065304;TENOR=Os02t0307800-01;KEGG=Os02t0307800-01
Chr02	irgsp1_rep	five_prime_UTR	12086017	12086060	.	+	.	Parent=Os02t0307800-01
Chr02	irgsp1_rep	CDS	12086061	12086399	.	+	0	Parent=Os02t0307800-01
Chr02	irgsp1_rep	CDS	12086488	12086712	.	+	0	Parent=Os02t0307800-01
Chr02	irgsp1_rep	CDS	12088557	12088582	.	+	0	Parent=Os02t0307800-01
Chr02	irgsp1_rep	CDS	12088668	12088899	.	+	1	Parent=Os02t0307800-01
Chr02	irgsp1_rep	three_prime_UTR	12088900	12089349	.	+	.	Parent=Os02t0307800-01
Chr02	irgsp1_rep	mRNA	12086040	12089186	.	+	.	ID=Os02t0307800-02;Name=Os02t0307800-02;Locus_id=Os02g0307800;Note=Protein of unknown function DUF3082 domain containing protein.;Transcript_evidence=AK061868 (DDBJ%2C Best hit);ORF_evidence=B8AG73 (UniProt);InterPro=Protein of unknown function DUF3082 (IPR021434);NIAS_FLcDNA=001-040-H11;Expression=AK061868;TENOR=Os02t0307800-02;KEGG=Os02t0307800-02
Chr02	irgsp1_rep	five_prime_UTR	12086040	12086060	.	+	.	Parent=Os02t0307800-02
Chr02	irgsp1_rep	CDS	12086061	12086399	.	+	0	Parent=Os02t0307800-02
Chr02	irgsp1_rep	CDS	12086488	12086712	.	+	0	Parent=Os02t0307800-02
Chr02	irgsp1_rep	CDS	12088557	12088582	.	+	0	Parent=Os02t0307800-02
Chr02	irgsp1_rep	CDS	12088668	12088899	.	+	1	Parent=Os02t0307800-02
Chr02	irgsp1_rep	three_prime_UTR	12088900	12089186	.	+	.	Parent=Os02t0307800-02
Chr02	irgsp1_rep	mRNA	12089714	12091112	.	-	.	ID=Os02t0307900-00;Name=Os02t0307900-00;Locus_id=Os02g0307900;Note=Transposase (putative)%2C gypsy type domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001046644.1 (RefSeq);InterPro=Transposase (putative)%2C gypsy type (IPR007321);TENOR=Os02t0307900-00
Chr02	irgsp1_rep	CDS	12090104	12091112	.	-	0	Parent=Os02t0307900-00
Chr02	irgsp1_rep	CDS	12089714	12090009	.	-	2	Parent=Os02t0307900-00
Chr02	irgsp1_rep	mRNA	12113935	12114966	.	-	.	ID=Os02t0308400-02;Name=Os02t0308400-02;Locus_id=Os02g0308400;CGSNL Gene Symbol=FLA19;CGSNL Gene Name=FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 19;Oryzabase Gene Symbol Synonym(s)=OsFLA19;Oryzabase Gene Name Synonym(s)=fasciclin-like AGP 19%2C fasciclin-like arabinogalactan protein 19;Note=FAS1 domain domain containing protein.;Transcript_evidence=AK061195 (DDBJ%2C Best hit),AK104181 (DDBJ%2C Best hit),AK104630 (DDBJ%2C Best hit),AK104655 (DDBJ%2C Best hit);ORF_evidence=NP_001151382.1 (RefSeq);NIAS_FLcDNA=006-209-H01,006-302-B07,006-310-C03,006-311-C06;Oryzabase=11354;Expression=AK061195;TENOR=Os02t0308400-02;KEGG=Os02t0308400-02
Chr02	irgsp1_rep	five_prime_UTR	12114870	12114966	.	-	.	Parent=Os02t0308400-02
Chr02	irgsp1_rep	CDS	12114066	12114869	.	-	0	Parent=Os02t0308400-02
Chr02	irgsp1_rep	three_prime_UTR	12113935	12114065	.	-	.	Parent=Os02t0308400-02
Chr02	irgsp1_rep	mRNA	12113907	12114894	.	-	.	ID=Os02t0308400-04;Name=Os02t0308400-04;Locus_id=Os02g0308400;CGSNL Gene Symbol=FLA19;CGSNL Gene Name=FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 19;Oryzabase Gene Symbol Synonym(s)=OsFLA19;Oryzabase Gene Name Synonym(s)=fasciclin-like AGP 19%2C fasciclin-like arabinogalactan protein 19;Note=FAS1 domain domain containing protein.;Transcript_evidence=AK061421 (DDBJ%2C Best hit);ORF_evidence=NP_001151382.1 (RefSeq);InterPro=FAS1 domain (IPR000782);NIAS_FLcDNA=006-306-F07;Oryzabase=11354;Expression=AK061421;TENOR=Os02t0308400-04;KEGG=Os02t0308400-04
Chr02	irgsp1_rep	five_prime_UTR	12114870	12114894	.	-	.	Parent=Os02t0308400-04
Chr02	irgsp1_rep	CDS	12114066	12114869	.	-	0	Parent=Os02t0308400-04
Chr02	irgsp1_rep	three_prime_UTR	12113907	12114065	.	-	.	Parent=Os02t0308400-04
Chr02	irgsp1_rep	mRNA	12128154	12129233	.	-	.	ID=Os02t0308800-01;Name=Os02t0308800-01;Locus_id=Os02g0308800;CGSNL Gene Symbol=FLA15;CGSNL Gene Name=FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 15;Oryzabase Gene Symbol Synonym(s)=OsFLA15;Oryzabase Gene Name Synonym(s)=fasciclin-like AGP 15%2C fasciclin-like arabinogalactan protein 15;Note=FAS1 domain domain containing protein.;Transcript_evidence=AK104533 (DDBJ%2C Best hit),AK060903 (DDBJ%2C Best hit),AK104098 (DDBJ%2C Best hit);ORF_evidence=Q06I92 (UniProt);InterPro=FAS1 domain (IPR000782);NIAS_FLcDNA=006-304-D08,001-035-E01,006-201-D11;Oryzabase=11350;Expression=AK104533;TENOR=Os02t0308800-01;KEGG=Os02t0308800-01
Chr02	irgsp1_rep	five_prime_UTR	12129193	12129233	.	-	.	Parent=Os02t0308800-01
Chr02	irgsp1_rep	CDS	12128386	12129192	.	-	0	Parent=Os02t0308800-01
Chr02	irgsp1_rep	three_prime_UTR	12128154	12128385	.	-	.	Parent=Os02t0308800-01
Chr02	irgsp1_rep	mRNA	12127913	12129230	.	-	.	ID=Os02t0308800-02;Name=Os02t0308800-02;Locus_id=Os02g0308800;CGSNL Gene Symbol=FLA15;CGSNL Gene Name=FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 15;Oryzabase Gene Symbol Synonym(s)=OsFLA15;Oryzabase Gene Name Synonym(s)=fasciclin-like AGP 15%2C fasciclin-like arabinogalactan protein 15;Note=Conserved hypothetical protein.;Transcript_evidence=AK064819 (DDBJ%2C Best hit);ORF_evidence=NP_001172743.1 (RefSeq);NIAS_FLcDNA=J013000E21;Oryzabase=11350;TENOR=Os02t0308800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	12129101	12129230	.	-	.	Parent=Os02t0308800-02
Chr02	irgsp1_rep	five_prime_UTR	12128159	12128506	.	-	.	Parent=Os02t0308800-02
Chr02	irgsp1_rep	CDS	12128018	12128158	.	-	0	Parent=Os02t0308800-02
Chr02	irgsp1_rep	three_prime_UTR	12127913	12128017	.	-	.	Parent=Os02t0308800-02
Chr02	irgsp1_rep	mRNA	12143096	12144165	.	-	.	ID=Os02t0309200-00;Name=Os02t0309200-00;Locus_id=Os02g0309200;Oryzabase Gene Symbol Synonym(s)=OsMB4%2C MB4;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 4%2C MDC protein with a BTB domain 4%2C MDC protein having BTB domain 4;Note=BTB/POZ-like domain containing protein.;Transcript_evidence=AK372544 (DDBJ);ORF_evidence=Q6Z0V7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);Oryzabase=21198;TENOR=Os02t0309200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	12144158	12144165	.	-	.	Parent=Os02t0309200-00
Chr02	irgsp1_rep	CDS	12143096	12144157	.	-	0	Parent=Os02t0309200-00
Chr02	irgsp1_rep	mRNA	12153525	12154677	.	-	.	ID=Os02t0309500-00;Name=Os02t0309500-00;Locus_id=Os02g0309500;Oryzabase Gene Symbol Synonym(s)=OsMB2%2C MB2;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 2%2C MDC protein with a BTB domain 2%2C MDC protein having BTB domain 2;Note=BTB/POZ-like domain containing protein.;Transcript_evidence=AK372544 (DDBJ);ORF_evidence=A3A605 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);Oryzabase=21196;TENOR=Os02t0309500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	12154631	12154677	.	-	.	Parent=Os02t0309500-00
Chr02	irgsp1_rep	CDS	12153845	12154630	.	-	0	Parent=Os02t0309500-00
Chr02	irgsp1_rep	three_prime_UTR	12153525	12153844	.	-	.	Parent=Os02t0309500-00
Chr02	irgsp1_rep	mRNA	12185506	12187024	.	+	.	ID=Os02t0310200-01;Name=Os02t0310200-01;Locus_id=Os02g0310200;Note=Conserved hypothetical protein.;Transcript_evidence=AK061899 (DDBJ%2C Best hit);ORF_evidence=B9F588 (UniProt);NIAS_FLcDNA=001-041-H02;Expression=AK061899;TENOR=Os02t0310200-01;KEGG=Os02t0310200-01
Chr02	irgsp1_rep	five_prime_UTR	12185506	12185819	.	+	.	Parent=Os02t0310200-01
Chr02	irgsp1_rep	CDS	12185820	12185959	.	+	0	Parent=Os02t0310200-01
Chr02	irgsp1_rep	CDS	12186292	12186408	.	+	1	Parent=Os02t0310200-01
Chr02	irgsp1_rep	CDS	12186728	12186731	.	+	1	Parent=Os02t0310200-01
Chr02	irgsp1_rep	three_prime_UTR	12186732	12187024	.	+	.	Parent=Os02t0310200-01
Chr02	irgsp1_rep	mRNA	12188660	12189305	.	+	.	ID=Os02t0310400-01;Name=Os02t0310400-01;Locus_id=Os02g0310400;Note=Conserved hypothetical protein.;Transcript_evidence=AK106779 (DDBJ%2C Best hit);ORF_evidence=A2ZKV3 (UniProt);NIAS_FLcDNA=002-115-H03;TENOR=Os02t0310400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	12188660	12189220	.	+	0	Parent=Os02t0310400-01
Chr02	irgsp1_rep	three_prime_UTR	12189221	12189305	.	+	.	Parent=Os02t0310400-01
Chr02	irgsp1_rep	mRNA	12191527	12192626	.	-	.	ID=Os02t0310500-00;Name=Os02t0310500-00;Locus_id=Os02g0310500;Oryzabase Gene Symbol Synonym(s)=OsMB1%2C MB1;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 1%2C MDC protein with a BTB domain 1%2C MDC protein having BTB domain 1;Note=BTB/POZ-like domain containing protein.;Transcript_evidence=AK372544 (DDBJ);ORF_evidence=A2X3Y3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);Oryzabase=21195;TENOR=Os02t0310500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	12191631	12192626	.	-	0	Parent=Os02t0310500-00
Chr02	irgsp1_rep	three_prime_UTR	12191527	12191630	.	-	.	Parent=Os02t0310500-00
Chr02	irgsp1_rep	mRNA	12218391	12219582	.	+	.	ID=Os02t0311150-00;Name=Os02t0311150-00;Locus_id=Os02g0311150;Oryzabase Gene Symbol Synonym(s)=OsMB3%2C MB3;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 3%2C MDC protein with a BTB domain 3%2C MDC protein having BTB domain 3;Note=BTB/POZ-like domain containing protein.;Transcript_evidence=AK372544 (DDBJ);ORF_evidence=Q6YYI9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);Oryzabase=21197;TENOR=Os02t0311150-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	12218391	12219563	.	+	0	Parent=Os02t0311150-00
Chr02	irgsp1_rep	three_prime_UTR	12219564	12219582	.	+	.	Parent=Os02t0311150-00
Chr02	irgsp1_rep	mRNA	12265010	12265992	.	-	.	ID=Os02t0311600-00;Name=Os02t0311600-00;Locus_id=Os02g0311600;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8GRZ2 (UniProt);TENOR=Os02t0311600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	12265884	12265992	.	-	0	Parent=Os02t0311600-00
Chr02	irgsp1_rep	CDS	12265572	12265772	.	-	2	Parent=Os02t0311600-00
Chr02	irgsp1_rep	CDS	12265010	12265353	.	-	2	Parent=Os02t0311600-00
Chr02	irgsp1_rep	mRNA	12269473	12271218	.	-	.	ID=Os02t0311800-00;Name=Os02t0311800-00;Locus_id=Os02g0311800;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3A611 (UniProt);TENOR=Os02t0311800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	12270986	12271218	.	-	0	Parent=Os02t0311800-00
Chr02	irgsp1_rep	CDS	12270555	12270649	.	-	1	Parent=Os02t0311800-00
Chr02	irgsp1_rep	CDS	12269473	12269720	.	-	2	Parent=Os02t0311800-00
Chr02	irgsp1_rep	mRNA	12320251	12323962	.	+	.	ID=Os02t0312500-01;Name=Os02t0312500-01;Locus_id=Os02g0312500;Note=Similar to predicted protein.;Transcript_evidence=AK100390 (DDBJ%2C Best hit);ORF_evidence=B7E5N9 (UniProt);InterPro=Optic atrophy 3-like (IPR010754);NIAS_FLcDNA=J023085P21;Expression=AK100390;TENOR=Os02t0312500-01;KEGG=Os02t0312500-01
Chr02	irgsp1_rep	five_prime_UTR	12320251	12320326	.	+	.	Parent=Os02t0312500-01
Chr02	irgsp1_rep	five_prime_UTR	12320367	12320461	.	+	.	Parent=Os02t0312500-01
Chr02	irgsp1_rep	CDS	12320462	12320590	.	+	0	Parent=Os02t0312500-01
Chr02	irgsp1_rep	CDS	12321193	12321327	.	+	0	Parent=Os02t0312500-01
Chr02	irgsp1_rep	CDS	12321717	12321719	.	+	0	Parent=Os02t0312500-01
Chr02	irgsp1_rep	three_prime_UTR	12321720	12323962	.	+	.	Parent=Os02t0312500-01
Chr02	irgsp1_rep	mRNA	12320251	12324015	.	+	.	ID=Os02t0312500-02;Name=Os02t0312500-02;Locus_id=Os02g0312500;Note=Optic atrophy 3 family protein.;Transcript_evidence=AK061035 (DDBJ%2C Best hit);ORF_evidence=B7EQD1 (UniProt);InterPro=Optic atrophy 3-like (IPR010754);NIAS_FLcDNA=006-205-A09;Expression=AK061035;TENOR=Os02t0312500-02;KEGG=Os02t0312500-02
Chr02	irgsp1_rep	five_prime_UTR	12320251	12320461	.	+	.	Parent=Os02t0312500-02
Chr02	irgsp1_rep	CDS	12320462	12320590	.	+	0	Parent=Os02t0312500-02
Chr02	irgsp1_rep	CDS	12321193	12321327	.	+	0	Parent=Os02t0312500-02
Chr02	irgsp1_rep	CDS	12321720	12321806	.	+	0	Parent=Os02t0312500-02
Chr02	irgsp1_rep	CDS	12323440	12323589	.	+	0	Parent=Os02t0312500-02
Chr02	irgsp1_rep	three_prime_UTR	12323590	12324015	.	+	.	Parent=Os02t0312500-02
Chr02	irgsp1_rep	mRNA	12320468	12321803	.	-	.	ID=Os02t0312550-00;Name=Os02t0312550-00;Locus_id=Os02g0312550;Note=Hypothetical protein.;Transcript_evidence=EU950761 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0312550-00
Chr02	irgsp1_rep	five_prime_UTR	12321802	12321803	.	-	.	Parent=Os02t0312550-00
Chr02	irgsp1_rep	CDS	12321698	12321801	.	-	0	Parent=Os02t0312550-00
Chr02	irgsp1_rep	CDS	12321241	12321388	.	-	1	Parent=Os02t0312550-00
Chr02	irgsp1_rep	three_prime_UTR	12320955	12321240	.	-	.	Parent=Os02t0312550-00
Chr02	irgsp1_rep	three_prime_UTR	12320468	12320661	.	-	.	Parent=Os02t0312550-00
Chr02	irgsp1_rep	mRNA	12324596	12326744	.	-	.	ID=Os02t0312600-01;Name=Os02t0312600-01;Locus_id=Os02g0312600;CGSNL Gene Symbol=RAC7;CGSNL Gene Name=RAC/ROP-TYPE GTPASE 7;Oryzabase Gene Symbol Synonym(s)=OSRAC7%2C OsRac7%2C ROP5%2C OsRop5;Oryzabase Gene Name Synonym(s)=small GTP-binding protein 7%2C Rac-like GTP-binding protein 7%2C GTPase protein ROP5;Note=Rac-like GTP-binding protein 7.;Transcript_evidence=AK058414 (DDBJ%2C Best hit);ORF_evidence=Q6Z7L8 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Cellular Component: membrane (GO:0016020),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C Ras type (IPR020849);NIAS_FLcDNA=001-015-D01;Oryzabase=6292;Expression=AK058414;TENOR=Os02t0312600-01;KEGG=Os02t0312600-01
Chr02	irgsp1_rep	five_prime_UTR	12326654	12326744	.	-	.	Parent=Os02t0312600-01
Chr02	irgsp1_rep	CDS	12326555	12326653	.	-	0	Parent=Os02t0312600-01
Chr02	irgsp1_rep	CDS	12326377	12326464	.	-	0	Parent=Os02t0312600-01
Chr02	irgsp1_rep	CDS	12325854	12325963	.	-	2	Parent=Os02t0312600-01
Chr02	irgsp1_rep	CDS	12325697	12325760	.	-	0	Parent=Os02t0312600-01
Chr02	irgsp1_rep	CDS	12325554	12325618	.	-	2	Parent=Os02t0312600-01
Chr02	irgsp1_rep	CDS	12325264	12325329	.	-	0	Parent=Os02t0312600-01
Chr02	irgsp1_rep	CDS	12324766	12324867	.	-	0	Parent=Os02t0312600-01
Chr02	irgsp1_rep	three_prime_UTR	12324596	12324765	.	-	.	Parent=Os02t0312600-01
Chr02	irgsp1_rep	mRNA	12335408	12338632	.	-	.	ID=Os02t0312700-01;Name=Os02t0312700-01;Locus_id=Os02g0312700;Note=Similar to ATP11 protein.;Transcript_evidence=AK102909 (DDBJ%2C Best hit);ORF_evidence=NP_001150475.1 (RefSeq);GO=Biological Process: protein complex assembly (GO:0006461),Cellular Component: mitochondrion (GO:0005739);InterPro=ATP11 (IPR010591);NIAS_FLcDNA=J033113H15;Expression=AK102909;TENOR=Os02t0312700-01;KEGG=Os02t0312700-01
Chr02	irgsp1_rep	five_prime_UTR	12338597	12338632	.	-	.	Parent=Os02t0312700-01
Chr02	irgsp1_rep	CDS	12338330	12338596	.	-	0	Parent=Os02t0312700-01
Chr02	irgsp1_rep	CDS	12337226	12337305	.	-	0	Parent=Os02t0312700-01
Chr02	irgsp1_rep	CDS	12337084	12337142	.	-	1	Parent=Os02t0312700-01
Chr02	irgsp1_rep	CDS	12335772	12336076	.	-	2	Parent=Os02t0312700-01
Chr02	irgsp1_rep	three_prime_UTR	12335408	12335771	.	-	.	Parent=Os02t0312700-01
Chr02	irgsp1_rep	mRNA	12335390	12338626	.	-	.	ID=Os02t0312700-02;Name=Os02t0312700-02;Locus_id=Os02g0312700;Note=ATP11 family protein.;Transcript_evidence=AK072956 (DDBJ%2C Best hit);ORF_evidence=NP_001150475.1 (RefSeq);GO=Biological Process: protein complex assembly (GO:0006461),Cellular Component: mitochondrion (GO:0005739);InterPro=ATP11 (IPR010591);NIAS_FLcDNA=J023150C21;Expression=AK072956;TENOR=Os02t0312700-02;KEGG=Os02t0312700-02
Chr02	irgsp1_rep	five_prime_UTR	12338597	12338626	.	-	.	Parent=Os02t0312700-02
Chr02	irgsp1_rep	CDS	12338330	12338596	.	-	0	Parent=Os02t0312700-02
Chr02	irgsp1_rep	CDS	12337226	12337305	.	-	0	Parent=Os02t0312700-02
Chr02	irgsp1_rep	CDS	12337058	12337142	.	-	1	Parent=Os02t0312700-02
Chr02	irgsp1_rep	three_prime_UTR	12337056	12337057	.	-	.	Parent=Os02t0312700-02
Chr02	irgsp1_rep	three_prime_UTR	12335390	12336076	.	-	.	Parent=Os02t0312700-02
Chr02	irgsp1_rep	mRNA	12336240	12338263	.	+	.	ID=Os02t0312750-01;Name=Os02t0312750-01;Locus_id=Os02g0312750;Note=Hypothetical gene.;Transcript_evidence=AK288784 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090069I04;TENOR=Os02t0312750-01;KEGG=Os02t0312750-01
Chr02	irgsp1_rep	five_prime_UTR	12336240	12336473	.	+	.	Parent=Os02t0312750-01
Chr02	irgsp1_rep	CDS	12336474	12336758	.	+	0	Parent=Os02t0312750-01
Chr02	irgsp1_rep	three_prime_UTR	12336759	12338263	.	+	.	Parent=Os02t0312750-01
Chr02	irgsp1_rep	mRNA	12340258	12348527	.	-	.	ID=Os02t0312800-01;Name=Os02t0312800-01;Locus_id=Os02g0312800;RAP-DB Gene Symbol Synonym(s)=OsSNI1;CGSNL Gene Symbol=SNI1;Oryzabase Gene Symbol Synonym(s)=OsSNI1;Oryzabase Gene Name Synonym(s)="Suppressor of NPR1-1%2C Inducible 1";Note=Homolog of the Arabidopsis SNI1 protein%2C Negative regulation of E2F transcription factor;Transcript_evidence=AK112066;ORF_evidence=Q6Z6S7;NIAS_FLcDNA=001-115-F01;Manual Curation=May 2%2C 2018;Literature_PMID=29610335;Oryzabase=22582;Expression=AK112066;TENOR=Os02t0312800-01;KEGG=Os02t0312800-01
Chr02	irgsp1_rep	five_prime_UTR	12348466	12348527	.	-	.	Parent=Os02t0312800-01
Chr02	irgsp1_rep	CDS	12348342	12348465	.	-	0	Parent=Os02t0312800-01
Chr02	irgsp1_rep	CDS	12348137	12348203	.	-	2	Parent=Os02t0312800-01
Chr02	irgsp1_rep	CDS	12347470	12347563	.	-	1	Parent=Os02t0312800-01
Chr02	irgsp1_rep	CDS	12346760	12346822	.	-	0	Parent=Os02t0312800-01
Chr02	irgsp1_rep	CDS	12346545	12346634	.	-	0	Parent=Os02t0312800-01
Chr02	irgsp1_rep	CDS	12345647	12345715	.	-	0	Parent=Os02t0312800-01
Chr02	irgsp1_rep	CDS	12345093	12345174	.	-	0	Parent=Os02t0312800-01
Chr02	irgsp1_rep	CDS	12344946	12344995	.	-	2	Parent=Os02t0312800-01
Chr02	irgsp1_rep	CDS	12344568	12344771	.	-	0	Parent=Os02t0312800-01
Chr02	irgsp1_rep	CDS	12344427	12344497	.	-	0	Parent=Os02t0312800-01
Chr02	irgsp1_rep	CDS	12344278	12344347	.	-	1	Parent=Os02t0312800-01
Chr02	irgsp1_rep	CDS	12342941	12343006	.	-	0	Parent=Os02t0312800-01
Chr02	irgsp1_rep	CDS	12341748	12341900	.	-	0	Parent=Os02t0312800-01
Chr02	irgsp1_rep	CDS	12340842	12340966	.	-	0	Parent=Os02t0312800-01
Chr02	irgsp1_rep	CDS	12340527	12340611	.	-	1	Parent=Os02t0312800-01
Chr02	irgsp1_rep	three_prime_UTR	12340258	12340526	.	-	.	Parent=Os02t0312800-01
Chr02	irgsp1_rep	mRNA	12339729	12348527	.	-	.	ID=Os02t0312800-02;Name=Os02t0312800-02;Locus_id=Os02g0312800;CGSNL Gene Symbol=SNI1;Oryzabase Gene Symbol Synonym(s)=OsSNI1;Oryzabase Gene Name Synonym(s)="Suppressor of NPR1-1%2C Inducible 1";Note=Ankyrin repeat containing protein.;Transcript_evidence=AK102001 (DDBJ%2C Best hit);ORF_evidence=B9F596 (UniProt);NIAS_FLcDNA=J033079M23;Oryzabase=22582;Expression=AK102001;TENOR=Os02t0312800-02;KEGG=Os02t0312800-02
Chr02	irgsp1_rep	five_prime_UTR	12348466	12348527	.	-	.	Parent=Os02t0312800-02
Chr02	irgsp1_rep	CDS	12348342	12348465	.	-	0	Parent=Os02t0312800-02
Chr02	irgsp1_rep	CDS	12348137	12348203	.	-	2	Parent=Os02t0312800-02
Chr02	irgsp1_rep	CDS	12347470	12347563	.	-	1	Parent=Os02t0312800-02
Chr02	irgsp1_rep	CDS	12346760	12346822	.	-	0	Parent=Os02t0312800-02
Chr02	irgsp1_rep	CDS	12346545	12346634	.	-	0	Parent=Os02t0312800-02
Chr02	irgsp1_rep	CDS	12345647	12345715	.	-	0	Parent=Os02t0312800-02
Chr02	irgsp1_rep	CDS	12345093	12345174	.	-	0	Parent=Os02t0312800-02
Chr02	irgsp1_rep	CDS	12344946	12344995	.	-	2	Parent=Os02t0312800-02
Chr02	irgsp1_rep	CDS	12344568	12344771	.	-	0	Parent=Os02t0312800-02
Chr02	irgsp1_rep	CDS	12344427	12344497	.	-	0	Parent=Os02t0312800-02
Chr02	irgsp1_rep	CDS	12344278	12344347	.	-	1	Parent=Os02t0312800-02
Chr02	irgsp1_rep	CDS	12342941	12343006	.	-	0	Parent=Os02t0312800-02
Chr02	irgsp1_rep	CDS	12341748	12341900	.	-	0	Parent=Os02t0312800-02
Chr02	irgsp1_rep	CDS	12340842	12340966	.	-	0	Parent=Os02t0312800-02
Chr02	irgsp1_rep	CDS	12340527	12340611	.	-	1	Parent=Os02t0312800-02
Chr02	irgsp1_rep	three_prime_UTR	12340204	12340526	.	-	.	Parent=Os02t0312800-02
Chr02	irgsp1_rep	three_prime_UTR	12339729	12340116	.	-	.	Parent=Os02t0312800-02
Chr02	irgsp1_rep	mRNA	12365588	12375180	.	+	.	ID=Os02t0313400-01;Name=Os02t0313400-01;Locus_id=Os02g0313400;RAP-DB Gene Symbol Synonym(s)=API5%2C OsAPI5%2C Os API5;RAP-DB Gene Name Synonym(s)=APOPTOSIS INHIBITOR5;CGSNL Gene Symbol=API5;CGSNL Gene Name=APOPTOSIS INHIBITOR 5;Oryzabase Gene Symbol Synonym(s)=API5%2C Os API5%2C OsAPI5;Oryzabase Gene Name Synonym(s)=APOPTOSIS INHIBITOR5;Note=Putative homolog of antiapoptosis protein Api5 in animal%2C Regulation of tapetal programmed cell death (PCD) and degeneration during pollen development;Transcript_evidence=AK073608 (truncated),Inferred from literature;ORF_evidence=Q6Z6S1;InterPro=Armadillo-type fold (IPR016024),Apoptosis inhibitory 5 (IPR008383);NIAS_FLcDNA=J033050C22 (truncated);Manual Curation=July 27%2C 2020;Literature_PMID=21467577;Oryzabase=9250;Expression=AK073608;TENOR=Os02t0313400-01;KEGG=Os02t0313400-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=nucleus (GO:0005634)
Chr02	irgsp1_rep	five_prime_UTR	12365588	12365684	.	+	.	Parent=Os02t0313400-01
Chr02	irgsp1_rep	CDS	12365685	12365771	.	+	0	Parent=Os02t0313400-01
Chr02	irgsp1_rep	CDS	12365890	12366054	.	+	0	Parent=Os02t0313400-01
Chr02	irgsp1_rep	CDS	12367219	12367315	.	+	0	Parent=Os02t0313400-01
Chr02	irgsp1_rep	CDS	12367393	12367458	.	+	2	Parent=Os02t0313400-01
Chr02	irgsp1_rep	CDS	12368788	12368867	.	+	2	Parent=Os02t0313400-01
Chr02	irgsp1_rep	CDS	12368955	12369029	.	+	0	Parent=Os02t0313400-01
Chr02	irgsp1_rep	CDS	12369136	12369285	.	+	0	Parent=Os02t0313400-01
Chr02	irgsp1_rep	CDS	12370720	12370785	.	+	0	Parent=Os02t0313400-01
Chr02	irgsp1_rep	CDS	12371045	12371110	.	+	0	Parent=Os02t0313400-01
Chr02	irgsp1_rep	CDS	12371557	12371667	.	+	0	Parent=Os02t0313400-01
Chr02	irgsp1_rep	CDS	12371821	12371907	.	+	0	Parent=Os02t0313400-01
Chr02	irgsp1_rep	CDS	12371991	12372097	.	+	0	Parent=Os02t0313400-01
Chr02	irgsp1_rep	CDS	12373045	12373159	.	+	1	Parent=Os02t0313400-01
Chr02	irgsp1_rep	CDS	12373376	12373441	.	+	0	Parent=Os02t0313400-01
Chr02	irgsp1_rep	CDS	12374425	12374519	.	+	0	Parent=Os02t0313400-01
Chr02	irgsp1_rep	CDS	12374604	12374784	.	+	1	Parent=Os02t0313400-01
Chr02	irgsp1_rep	three_prime_UTR	12374785	12375180	.	+	.	Parent=Os02t0313400-01
Chr02	irgsp1_rep	mRNA	12378127	12382321	.	-	.	ID=Os02t0313450-01;Name=Os02t0313450-01;Locus_id=Os02g0313450;Note=Conserved hypothetical protein.;Transcript_evidence=AK241389 (DDBJ%2C Best hit);ORF_evidence=B9F599 (UniProt);NIAS_FLcDNA=J065156J02;TENOR=Os02t0313450-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	12382085	12382321	.	-	.	Parent=Os02t0313450-01
Chr02	irgsp1_rep	CDS	12381842	12382084	.	-	0	Parent=Os02t0313450-01
Chr02	irgsp1_rep	CDS	12381569	12381751	.	-	0	Parent=Os02t0313450-01
Chr02	irgsp1_rep	CDS	12381361	12381480	.	-	0	Parent=Os02t0313450-01
Chr02	irgsp1_rep	three_prime_UTR	12381358	12381360	.	-	.	Parent=Os02t0313450-01
Chr02	irgsp1_rep	three_prime_UTR	12378127	12378445	.	-	.	Parent=Os02t0313450-01
Chr02	irgsp1_rep	mRNA	12382696	12391018	.	+	.	ID=Os02t0313500-01;Name=Os02t0313500-01;Locus_id=Os02g0313500;Note=Conserved hypothetical protein.;Transcript_evidence=AK120143 (DDBJ%2C Best hit);ORF_evidence=A3A620 (UniProt);NIAS_FLcDNA=J013028F03;TENOR=Os02t0313500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	12382696	12382882	.	+	.	Parent=Os02t0313500-01
Chr02	irgsp1_rep	five_prime_UTR	12383068	12383173	.	+	.	Parent=Os02t0313500-01
Chr02	irgsp1_rep	five_prime_UTR	12383363	12383451	.	+	.	Parent=Os02t0313500-01
Chr02	irgsp1_rep	five_prime_UTR	12383528	12383625	.	+	.	Parent=Os02t0313500-01
Chr02	irgsp1_rep	five_prime_UTR	12383992	12384969	.	+	.	Parent=Os02t0313500-01
Chr02	irgsp1_rep	five_prime_UTR	12385117	12385697	.	+	.	Parent=Os02t0313500-01
Chr02	irgsp1_rep	five_prime_UTR	12385941	12387117	.	+	.	Parent=Os02t0313500-01
Chr02	irgsp1_rep	CDS	12387118	12387261	.	+	0	Parent=Os02t0313500-01
Chr02	irgsp1_rep	CDS	12387352	12387418	.	+	0	Parent=Os02t0313500-01
Chr02	irgsp1_rep	CDS	12387570	12387653	.	+	2	Parent=Os02t0313500-01
Chr02	irgsp1_rep	CDS	12387738	12387820	.	+	2	Parent=Os02t0313500-01
Chr02	irgsp1_rep	three_prime_UTR	12387821	12387876	.	+	.	Parent=Os02t0313500-01
Chr02	irgsp1_rep	three_prime_UTR	12388894	12388965	.	+	.	Parent=Os02t0313500-01
Chr02	irgsp1_rep	three_prime_UTR	12389062	12389189	.	+	.	Parent=Os02t0313500-01
Chr02	irgsp1_rep	three_prime_UTR	12389301	12389387	.	+	.	Parent=Os02t0313500-01
Chr02	irgsp1_rep	three_prime_UTR	12389458	12389533	.	+	.	Parent=Os02t0313500-01
Chr02	irgsp1_rep	three_prime_UTR	12389642	12389935	.	+	.	Parent=Os02t0313500-01
Chr02	irgsp1_rep	three_prime_UTR	12390430	12390569	.	+	.	Parent=Os02t0313500-01
Chr02	irgsp1_rep	three_prime_UTR	12390655	12390843	.	+	.	Parent=Os02t0313500-01
Chr02	irgsp1_rep	three_prime_UTR	12390932	12391018	.	+	.	Parent=Os02t0313500-01
Chr02	irgsp1_rep	mRNA	12399055	12405155	.	-	.	ID=Os02t0313700-01;Name=Os02t0313700-01;Locus_id=Os02g0313700;CGSNL Gene Symbol=NTMC2T6.2;CGSNL Gene Name=N-TERMINAL-TM-C2 DOMAIN PROTEIN 6.2;Oryzabase Gene Symbol Synonym(s)=OsNTMC2T6.2;Oryzabase Gene Name Synonym(s)=C2 domain containing protein%2C N-terminal-TM-C2 domain protein 6.2%2C N-terminal trans- membrane and C2 domain protein 6.2%2C NTMC2 type 6.2 protein%2C NTMC2 family gene 6.2;Note=Similar to NTMC2T6.1/NTMC2TYPE6.1.;Transcript_evidence=AK072366 (DDBJ%2C Best hit);ORF_evidence=XP_002436740.1 (RefSeq);NIAS_FLcDNA=J023063O05;Oryzabase=16791;Expression=AK072366;TENOR=Os02t0313700-01;KEGG=Os02t0313700-01
Chr02	irgsp1_rep	five_prime_UTR	12405064	12405155	.	-	.	Parent=Os02t0313700-01
Chr02	irgsp1_rep	five_prime_UTR	12403462	12404926	.	-	.	Parent=Os02t0313700-01
Chr02	irgsp1_rep	CDS	12403138	12403461	.	-	0	Parent=Os02t0313700-01
Chr02	irgsp1_rep	CDS	12402840	12402983	.	-	0	Parent=Os02t0313700-01
Chr02	irgsp1_rep	CDS	12402217	12402312	.	-	0	Parent=Os02t0313700-01
Chr02	irgsp1_rep	CDS	12401979	12402110	.	-	0	Parent=Os02t0313700-01
Chr02	irgsp1_rep	CDS	12401890	12401913	.	-	0	Parent=Os02t0313700-01
Chr02	irgsp1_rep	three_prime_UTR	12401744	12401889	.	-	.	Parent=Os02t0313700-01
Chr02	irgsp1_rep	three_prime_UTR	12401593	12401634	.	-	.	Parent=Os02t0313700-01
Chr02	irgsp1_rep	three_prime_UTR	12400933	12400981	.	-	.	Parent=Os02t0313700-01
Chr02	irgsp1_rep	three_prime_UTR	12400207	12400299	.	-	.	Parent=Os02t0313700-01
Chr02	irgsp1_rep	three_prime_UTR	12399875	12400058	.	-	.	Parent=Os02t0313700-01
Chr02	irgsp1_rep	three_prime_UTR	12399597	12399723	.	-	.	Parent=Os02t0313700-01
Chr02	irgsp1_rep	three_prime_UTR	12399055	12399356	.	-	.	Parent=Os02t0313700-01
Chr02	irgsp1_rep	mRNA	12398146	12405048	.	-	.	ID=Os02t0313700-02;Name=Os02t0313700-02;Locus_id=Os02g0313700;CGSNL Gene Symbol=NTMC2T6.2;CGSNL Gene Name=N-TERMINAL-TM-C2 DOMAIN PROTEIN 6.2;Oryzabase Gene Symbol Synonym(s)=OsNTMC2T6.2;Oryzabase Gene Name Synonym(s)=C2 domain containing protein%2C N-terminal-TM-C2 domain protein 6.2%2C N-terminal trans- membrane and C2 domain protein 6.2%2C NTMC2 type 6.2 protein%2C NTMC2 family gene 6.2;Note=Similar to Synaptotagmin C (Synaptic vesicle protein O-p65-C).;Transcript_evidence=AK101258 (DDBJ%2C Best hit);ORF_evidence=XP_002436740.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),C2 membrane targeting protein (IPR018029),C2 region (IPR020477);NIAS_FLcDNA=J033032H14;Oryzabase=16791;Expression=AK101258;TENOR=Os02t0313700-02;KEGG=Os02t0313700-02
Chr02	irgsp1_rep	five_prime_UTR	12404926	12405048	.	-	.	Parent=Os02t0313700-02
Chr02	irgsp1_rep	CDS	12404800	12404925	.	-	0	Parent=Os02t0313700-02
Chr02	irgsp1_rep	CDS	12403138	12403212	.	-	0	Parent=Os02t0313700-02
Chr02	irgsp1_rep	CDS	12402840	12402983	.	-	0	Parent=Os02t0313700-02
Chr02	irgsp1_rep	CDS	12402217	12402312	.	-	0	Parent=Os02t0313700-02
Chr02	irgsp1_rep	CDS	12401979	12402110	.	-	0	Parent=Os02t0313700-02
Chr02	irgsp1_rep	CDS	12401744	12401896	.	-	0	Parent=Os02t0313700-02
Chr02	irgsp1_rep	CDS	12401593	12401634	.	-	0	Parent=Os02t0313700-02
Chr02	irgsp1_rep	CDS	12400933	12400981	.	-	0	Parent=Os02t0313700-02
Chr02	irgsp1_rep	CDS	12400207	12400299	.	-	2	Parent=Os02t0313700-02
Chr02	irgsp1_rep	CDS	12399875	12400058	.	-	2	Parent=Os02t0313700-02
Chr02	irgsp1_rep	CDS	12399597	12399723	.	-	1	Parent=Os02t0313700-02
Chr02	irgsp1_rep	CDS	12398421	12399356	.	-	0	Parent=Os02t0313700-02
Chr02	irgsp1_rep	three_prime_UTR	12398146	12398420	.	-	.	Parent=Os02t0313700-02
Chr02	irgsp1_rep	mRNA	12414384	12421835	.	-	.	ID=Os02t0313900-01;Name=Os02t0313900-01;Locus_id=Os02g0313900;Note=Similar to Plasma membrane H+-ATPase.;Transcript_evidence=AK242833 (DDBJ%2C Best hit);ORF_evidence=Q43002 (UniProt);GO=Biological Process: ATP catabolic process (GO:0006200),Biological Process: ATP biosynthetic process (GO:0006754),Cellular Component: integral to membrane (GO:0016021),Molecular Function: ATPase activity (GO:0016887);InterPro=ATPase%2C P-type cation-transporter%2C N-terminal (IPR004014),ATPase%2C P-type%2C plasma-membrane proton-efflux (IPR006534);NIAS_FLcDNA=J090067N22;TENOR=Os02t0313900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	12421835	12421835	.	-	.	Parent=Os02t0313900-01
Chr02	irgsp1_rep	CDS	12421250	12421834	.	-	0	Parent=Os02t0313900-01
Chr02	irgsp1_rep	CDS	12421025	12421123	.	-	0	Parent=Os02t0313900-01
Chr02	irgsp1_rep	CDS	12420866	12420916	.	-	0	Parent=Os02t0313900-01
Chr02	irgsp1_rep	three_prime_UTR	12420412	12420865	.	-	.	Parent=Os02t0313900-01
Chr02	irgsp1_rep	three_prime_UTR	12419938	12420099	.	-	.	Parent=Os02t0313900-01
Chr02	irgsp1_rep	three_prime_UTR	12419756	12419848	.	-	.	Parent=Os02t0313900-01
Chr02	irgsp1_rep	three_prime_UTR	12419620	12419662	.	-	.	Parent=Os02t0313900-01
Chr02	irgsp1_rep	three_prime_UTR	12419439	12419525	.	-	.	Parent=Os02t0313900-01
Chr02	irgsp1_rep	three_prime_UTR	12419133	12419289	.	-	.	Parent=Os02t0313900-01
Chr02	irgsp1_rep	three_prime_UTR	12418974	12419024	.	-	.	Parent=Os02t0313900-01
Chr02	irgsp1_rep	three_prime_UTR	12417485	12417547	.	-	.	Parent=Os02t0313900-01
Chr02	irgsp1_rep	three_prime_UTR	12416967	12417389	.	-	.	Parent=Os02t0313900-01
Chr02	irgsp1_rep	three_prime_UTR	12416471	12416547	.	-	.	Parent=Os02t0313900-01
Chr02	irgsp1_rep	three_prime_UTR	12415698	12415764	.	-	.	Parent=Os02t0313900-01
Chr02	irgsp1_rep	three_prime_UTR	12414384	12414774	.	-	.	Parent=Os02t0313900-01
Chr02	irgsp1_rep	mRNA	12432303	12448557	.	+	.	ID=Os02t0314300-00;Name=Os02t0314300-00;Locus_id=Os02g0314300;CGSNL Gene Symbol=CAX1C;CGSNL Gene Name=Ca(2+)/H(+) EXCHANGER 1C;Oryzabase Gene Symbol Synonym(s)=OsCAX1c%2C CAX1c%2C CAX4%2C OsNCX5%2C OsNCX5.1%2C OsNCX5.2%2C NCX5;Oryzabase Gene Name Synonym(s)=Vacuolar cation/proton exchanger 1c%2C Ca(2+)/H(+) exchanger 1c%2C cation/H+ exchanger 1c%2C Na+/Ca2+ Exchanger 5%2C Sodium/calcium exchanger 5;Note=Sodium/calcium exchanger membrane region domain containing protein.;Transcript_evidence=AB112771 (DDBJ%2C Best hit);ORF_evidence=Q5KTQ9 (UniProt);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: cation transmembrane transporter activity (GO:0008324);InterPro=Calcium/proton exchanger (IPR004713),Calcium/proton exchanger superfamily (IPR004798),Sodium/calcium exchanger membrane region (IPR004837);Oryzabase=8981;TENOR=Os02t0314300-00;KEGG=Os02t0314300-00
Chr02	irgsp1_rep	five_prime_UTR	12432303	12432347	.	+	.	Parent=Os02t0314300-00
Chr02	irgsp1_rep	CDS	12432348	12432650	.	+	0	Parent=Os02t0314300-00
Chr02	irgsp1_rep	CDS	12441860	12441927	.	+	0	Parent=Os02t0314300-00
Chr02	irgsp1_rep	CDS	12442033	12442061	.	+	1	Parent=Os02t0314300-00
Chr02	irgsp1_rep	CDS	12442895	12443091	.	+	2	Parent=Os02t0314300-00
Chr02	irgsp1_rep	CDS	12443174	12443389	.	+	0	Parent=Os02t0314300-00
Chr02	irgsp1_rep	CDS	12446986	12447123	.	+	0	Parent=Os02t0314300-00
Chr02	irgsp1_rep	CDS	12447227	12447343	.	+	0	Parent=Os02t0314300-00
Chr02	irgsp1_rep	CDS	12447433	12447486	.	+	0	Parent=Os02t0314300-00
Chr02	irgsp1_rep	CDS	12447582	12447698	.	+	0	Parent=Os02t0314300-00
Chr02	irgsp1_rep	CDS	12447789	12447879	.	+	0	Parent=Os02t0314300-00
Chr02	irgsp1_rep	CDS	12448138	12448160	.	+	2	Parent=Os02t0314300-00
Chr02	irgsp1_rep	three_prime_UTR	12448161	12448557	.	+	.	Parent=Os02t0314300-00
Chr02	irgsp1_rep	mRNA	12450783	12453989	.	+	.	ID=Os02t0314400-01;Name=Os02t0314400-01;Locus_id=Os02g0314400;Note=Non-protein coding transcript.;Transcript_evidence=AK069918 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023039A19;TENOR=Os02t0314400-01
Chr02	irgsp1_rep	exon	12450783	12452032	.	+	.	Parent=Os02t0314400-01
Chr02	irgsp1_rep	exon	12452356	12452456	.	+	.	Parent=Os02t0314400-01
Chr02	irgsp1_rep	exon	12452581	12452659	.	+	.	Parent=Os02t0314400-01
Chr02	irgsp1_rep	exon	12452856	12453018	.	+	.	Parent=Os02t0314400-01
Chr02	irgsp1_rep	exon	12453402	12453485	.	+	.	Parent=Os02t0314400-01
Chr02	irgsp1_rep	exon	12453584	12453687	.	+	.	Parent=Os02t0314400-01
Chr02	irgsp1_rep	exon	12453790	12453989	.	+	.	Parent=Os02t0314400-01
Chr02	irgsp1_rep	mRNA	12464431	12466397	.	+	.	ID=Os02t0314600-01;Name=Os02t0314600-01;Locus_id=Os02g0314600;Note=Peptidase A1 domain containing protein.;Transcript_evidence=AK068924 (DDBJ%2C Best hit);ORF_evidence=A2X403 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J013170E21;Expression=AK068924;TENOR=Os02t0314600-01;KEGG=Os02t0314600-01
Chr02	irgsp1_rep	five_prime_UTR	12464431	12464563	.	+	.	Parent=Os02t0314600-01
Chr02	irgsp1_rep	CDS	12464564	12466108	.	+	0	Parent=Os02t0314600-01
Chr02	irgsp1_rep	three_prime_UTR	12466109	12466397	.	+	.	Parent=Os02t0314600-01
Chr02	irgsp1_rep	mRNA	12491942	12493673	.	+	.	ID=Os02t0314925-00;Name=Os02t0314925-00;Locus_id=Os02g0314925;Note=Similar to Integral membrane protein.;Transcript_evidence=AK356482 (DDBJ);ORF_evidence=Q53PN2 (UniProt);TENOR=Os02t0314925-00
Chr02	irgsp1_rep	five_prime_UTR	12491942	12492281	.	+	.	Parent=Os02t0314925-00
Chr02	irgsp1_rep	CDS	12492282	12492360	.	+	0	Parent=Os02t0314925-00
Chr02	irgsp1_rep	CDS	12493381	12493673	.	+	2	Parent=Os02t0314925-00
Chr02	irgsp1_rep	mRNA	12490271	12493553	.	-	.	ID=Os02t0315200-00;Name=Os02t0315200-00;Locus_id=Os02g0315200;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK376240 (DDBJ);ORF_evidence=NP_001044709.1 (RefSeq);InterPro=Pentatricopeptide repeat (IPR002885);TENOR=Os02t0315200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	12493480	12493553	.	-	.	Parent=Os02t0315200-00
Chr02	irgsp1_rep	CDS	12492862	12493479	.	-	0	Parent=Os02t0315200-00
Chr02	irgsp1_rep	CDS	12490271	12490561	.	-	0	Parent=Os02t0315200-00
Chr02	irgsp1_rep	mRNA	12494315	12495107	.	+	.	ID=Os02t0315400-01;Name=Os02t0315400-01;Locus_id=Os02g0315400;Note=Similar to DC2 protein.;Transcript_evidence=AK071564 (DDBJ%2C Best hit);ORF_evidence=NP_001150946.1 (RefSeq);NIAS_FLcDNA=J023101C14;TENOR=Os02t0315400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	12494315	12494362	.	+	.	Parent=Os02t0315400-01
Chr02	irgsp1_rep	CDS	12494363	12494986	.	+	0	Parent=Os02t0315400-01
Chr02	irgsp1_rep	three_prime_UTR	12494987	12495107	.	+	.	Parent=Os02t0315400-01
Chr02	irgsp1_rep	mRNA	12503757	12507109	.	-	.	ID=Os02t0315600-01;Name=Os02t0315600-01;Locus_id=Os02g0315600;Oryzabase Gene Symbol Synonym(s)=OsbHLH139%2C bHLH139%2C OsSACL3B%2C SACL3B;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 139;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=AK107002 (DDBJ%2C Best hit);ORF_evidence=Q10HE8 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=002-120-C10;Oryzabase=15416;Expression=AK107002;TENOR=Os02t0315600-01;KEGG=Os02t0315600-01
Chr02	irgsp1_rep	five_prime_UTR	12506728	12507109	.	-	.	Parent=Os02t0315600-01
Chr02	irgsp1_rep	five_prime_UTR	12506422	12506609	.	-	.	Parent=Os02t0315600-01
Chr02	irgsp1_rep	five_prime_UTR	12505194	12505353	.	-	.	Parent=Os02t0315600-01
Chr02	irgsp1_rep	CDS	12504429	12505193	.	-	0	Parent=Os02t0315600-01
Chr02	irgsp1_rep	three_prime_UTR	12503757	12504428	.	-	.	Parent=Os02t0315600-01
Chr02	irgsp1_rep	mRNA	12503796	12506887	.	-	.	ID=Os02t0315600-02;Name=Os02t0315600-02;Locus_id=Os02g0315600;Oryzabase Gene Symbol Synonym(s)=OsbHLH139%2C bHLH139%2C OsSACL3B%2C SACL3B;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 139;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=AK102703 (DDBJ%2C Best hit);ORF_evidence=Q10HE8 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J033103O07;Oryzabase=15416;Expression=AK102703;TENOR=Os02t0315600-02;KEGG=Os02t0315600-02
Chr02	irgsp1_rep	five_prime_UTR	12506728	12506887	.	-	.	Parent=Os02t0315600-02
Chr02	irgsp1_rep	five_prime_UTR	12506439	12506609	.	-	.	Parent=Os02t0315600-02
Chr02	irgsp1_rep	five_prime_UTR	12505194	12505353	.	-	.	Parent=Os02t0315600-02
Chr02	irgsp1_rep	CDS	12504429	12505193	.	-	0	Parent=Os02t0315600-02
Chr02	irgsp1_rep	three_prime_UTR	12503796	12504428	.	-	.	Parent=Os02t0315600-02
Chr02	irgsp1_rep	mRNA	12503308	12506137	.	-	.	ID=Os02t0315600-03;Name=Os02t0315600-03;Locus_id=Os02g0315600;Oryzabase Gene Symbol Synonym(s)=OsbHLH139%2C bHLH139%2C OsSACL3B%2C SACL3B;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 139;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=AK106848 (DDBJ%2C Best hit);ORF_evidence=Q10HE8 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=002-118-A09;Oryzabase=15416;Expression=AK106848;TENOR=Os02t0315600-03;KEGG=Os02t0315600-03
Chr02	irgsp1_rep	five_prime_UTR	12505194	12506137	.	-	.	Parent=Os02t0315600-03
Chr02	irgsp1_rep	CDS	12504429	12505193	.	-	0	Parent=Os02t0315600-03
Chr02	irgsp1_rep	three_prime_UTR	12503308	12504428	.	-	.	Parent=Os02t0315600-03
Chr02	irgsp1_rep	mRNA	12528770	12533296	.	-	.	ID=Os02t0316200-01;Name=Os02t0316200-01;Locus_id=Os02g0316200;Oryzabase Gene Symbol Synonym(s)=OsFbox084%2C OsFbox84%2C Os_F0452;Oryzabase Gene Name Synonym(s)=F-box protein 84;Note=Kelch-type beta propeller domain containing protein.;Transcript_evidence=AK073932 (DDBJ%2C Best hit);ORF_evidence=NP_001149151.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Kelch repeat type 1 (IPR006652),Galactose oxidase%2C beta-propeller (IPR015916);NIAS_FLcDNA=J033076K03;Oryzabase=16879;TENOR=Os02t0316200-01
Chr02	irgsp1_rep	five_prime_UTR	12533216	12533296	.	-	.	Parent=Os02t0316200-01
Chr02	irgsp1_rep	CDS	12532230	12533215	.	-	0	Parent=Os02t0316200-01
Chr02	irgsp1_rep	CDS	12528979	12529267	.	-	1	Parent=Os02t0316200-01
Chr02	irgsp1_rep	three_prime_UTR	12528770	12528978	.	-	.	Parent=Os02t0316200-01
Chr02	irgsp1_rep	mRNA	12528770	12533263	.	-	.	ID=Os02t0316200-02;Name=Os02t0316200-02;Locus_id=Os02g0316200;Oryzabase Gene Symbol Synonym(s)=OsFbox084%2C OsFbox84%2C Os_F0452;Oryzabase Gene Name Synonym(s)=F-box protein 84;Note=Kelch-type beta propeller domain containing protein.;Transcript_evidence=AK105757 (DDBJ%2C Best hit);ORF_evidence=NP_001149151.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Kelch repeat type 1 (IPR006652),Galactose oxidase%2C beta-propeller (IPR015916);NIAS_FLcDNA=001-202-D03;Oryzabase=16879;TENOR=Os02t0316200-02
Chr02	irgsp1_rep	five_prime_UTR	12533216	12533263	.	-	.	Parent=Os02t0316200-02
Chr02	irgsp1_rep	CDS	12532230	12533215	.	-	0	Parent=Os02t0316200-02
Chr02	irgsp1_rep	CDS	12528979	12529267	.	-	1	Parent=Os02t0316200-02
Chr02	irgsp1_rep	three_prime_UTR	12528770	12528978	.	-	.	Parent=Os02t0316200-02
Chr02	irgsp1_rep	mRNA	12567022	12567873	.	+	.	ID=Os02t0316800-01;Name=Os02t0316800-01;Locus_id=Os02g0316800;Note=Similar to MRNA binding protein precursor.;Transcript_evidence=AK062767 (DDBJ%2C Best hit);ORF_evidence=Q9XEJ6 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-106-H11;Expression=AK062767;TENOR=Os02t0316800-01;KEGG=Os02t0316800-01
Chr02	irgsp1_rep	five_prime_UTR	12567022	12567099	.	+	.	Parent=Os02t0316800-01
Chr02	irgsp1_rep	CDS	12567100	12567222	.	+	0	Parent=Os02t0316800-01
Chr02	irgsp1_rep	CDS	12567365	12567673	.	+	0	Parent=Os02t0316800-01
Chr02	irgsp1_rep	three_prime_UTR	12567674	12567873	.	+	.	Parent=Os02t0316800-01
Chr02	irgsp1_rep	mRNA	12569881	12589326	.	+	.	ID=Os02t0316900-01;Name=Os02t0316900-01;Locus_id=Os02g0316900;Note=B-block binding subunit of TFIIIC domain containing protein.;Transcript_evidence=AK065679 (DDBJ%2C Best hit);ORF_evidence=Q6Z849 (UniProt);InterPro=B-block binding subunit of TFIIIC (IPR007309),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=J013035A08;TENOR=Os02t0316900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	12569881	12569982	.	+	.	Parent=Os02t0316900-01
Chr02	irgsp1_rep	five_prime_UTR	12570183	12570298	.	+	.	Parent=Os02t0316900-01
Chr02	irgsp1_rep	CDS	12570299	12570669	.	+	0	Parent=Os02t0316900-01
Chr02	irgsp1_rep	CDS	12572186	12572588	.	+	1	Parent=Os02t0316900-01
Chr02	irgsp1_rep	CDS	12572674	12572745	.	+	0	Parent=Os02t0316900-01
Chr02	irgsp1_rep	CDS	12572836	12572898	.	+	0	Parent=Os02t0316900-01
Chr02	irgsp1_rep	CDS	12573536	12573721	.	+	0	Parent=Os02t0316900-01
Chr02	irgsp1_rep	CDS	12575706	12576078	.	+	0	Parent=Os02t0316900-01
Chr02	irgsp1_rep	CDS	12576515	12576603	.	+	2	Parent=Os02t0316900-01
Chr02	irgsp1_rep	CDS	12579083	12579277	.	+	0	Parent=Os02t0316900-01
Chr02	irgsp1_rep	three_prime_UTR	12579278	12579828	.	+	.	Parent=Os02t0316900-01
Chr02	irgsp1_rep	three_prime_UTR	12580169	12580444	.	+	.	Parent=Os02t0316900-01
Chr02	irgsp1_rep	three_prime_UTR	12584395	12584534	.	+	.	Parent=Os02t0316900-01
Chr02	irgsp1_rep	three_prime_UTR	12585227	12585739	.	+	.	Parent=Os02t0316900-01
Chr02	irgsp1_rep	three_prime_UTR	12586468	12587030	.	+	.	Parent=Os02t0316900-01
Chr02	irgsp1_rep	three_prime_UTR	12587385	12587443	.	+	.	Parent=Os02t0316900-01
Chr02	irgsp1_rep	three_prime_UTR	12587914	12588366	.	+	.	Parent=Os02t0316900-01
Chr02	irgsp1_rep	three_prime_UTR	12588780	12588818	.	+	.	Parent=Os02t0316900-01
Chr02	irgsp1_rep	three_prime_UTR	12588990	12589326	.	+	.	Parent=Os02t0316900-01
Chr02	irgsp1_rep	mRNA	12569901	12580259	.	+	.	ID=Os02t0316900-02;Name=Os02t0316900-02;Locus_id=Os02g0316900;Note=B-block binding subunit of TFIIIC domain containing protein.;Transcript_evidence=AK070114 (DDBJ%2C Best hit);ORF_evidence=Q6Z849 (UniProt);InterPro=B-block binding subunit of TFIIIC (IPR007309),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=J023040N15;Expression=AK070114;TENOR=Os02t0316900-02;KEGG=Os02t0316900-02
Chr02	irgsp1_rep	five_prime_UTR	12569901	12569982	.	+	.	Parent=Os02t0316900-02
Chr02	irgsp1_rep	five_prime_UTR	12570183	12570298	.	+	.	Parent=Os02t0316900-02
Chr02	irgsp1_rep	CDS	12570299	12570669	.	+	0	Parent=Os02t0316900-02
Chr02	irgsp1_rep	CDS	12572186	12572588	.	+	1	Parent=Os02t0316900-02
Chr02	irgsp1_rep	CDS	12572674	12572745	.	+	0	Parent=Os02t0316900-02
Chr02	irgsp1_rep	CDS	12572836	12572898	.	+	0	Parent=Os02t0316900-02
Chr02	irgsp1_rep	CDS	12573536	12573721	.	+	0	Parent=Os02t0316900-02
Chr02	irgsp1_rep	CDS	12575706	12576078	.	+	0	Parent=Os02t0316900-02
Chr02	irgsp1_rep	CDS	12576515	12576603	.	+	2	Parent=Os02t0316900-02
Chr02	irgsp1_rep	CDS	12579083	12579277	.	+	0	Parent=Os02t0316900-02
Chr02	irgsp1_rep	three_prime_UTR	12579278	12579828	.	+	.	Parent=Os02t0316900-02
Chr02	irgsp1_rep	three_prime_UTR	12580169	12580259	.	+	.	Parent=Os02t0316900-02
Chr02	irgsp1_rep	mRNA	12600520	12604151	.	-	.	ID=Os02t0317300-01;Name=Os02t0317300-01;Locus_id=Os02g0317300;Oryzabase Gene Symbol Synonym(s)=OsFbox086%2C OsFbox86%2C Os_F0482;Oryzabase Gene Name Synonym(s)=F-box protein 86;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK071724 (DDBJ%2C Best hit);ORF_evidence=B6TSC4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023114H08;Oryzabase=16881;Expression=AK071724;TENOR=Os02t0317300-01;KEGG=Os02t0317300-01
Chr02	irgsp1_rep	five_prime_UTR	12604130	12604151	.	-	.	Parent=Os02t0317300-01
Chr02	irgsp1_rep	CDS	12603783	12604129	.	-	0	Parent=Os02t0317300-01
Chr02	irgsp1_rep	CDS	12600792	12601431	.	-	1	Parent=Os02t0317300-01
Chr02	irgsp1_rep	three_prime_UTR	12600520	12600791	.	-	.	Parent=Os02t0317300-01
Chr02	irgsp1_rep	mRNA	12609112	12613259	.	+	.	ID=Os02t0317400-01;Name=Os02t0317400-01;Locus_id=Os02g0317400;Note=Longin-like domain containing protein.;Transcript_evidence=AK061254 (DDBJ%2C Best hit);ORF_evidence=Q6Z844 (UniProt);GO=Biological Process: transport (GO:0006810);InterPro=Longin-like (IPR011012),AP complex%2C mu/sigma subunit (IPR022775);NIAS_FLcDNA=006-212-A06;Expression=AK061254;TENOR=Os02t0317400-01;KEGG=Os02t0317400-01
Chr02	irgsp1_rep	five_prime_UTR	12609112	12609225	.	+	.	Parent=Os02t0317400-01
Chr02	irgsp1_rep	five_prime_UTR	12609537	12609636	.	+	.	Parent=Os02t0317400-01
Chr02	irgsp1_rep	CDS	12609637	12609654	.	+	0	Parent=Os02t0317400-01
Chr02	irgsp1_rep	CDS	12610291	12610450	.	+	0	Parent=Os02t0317400-01
Chr02	irgsp1_rep	CDS	12611276	12611423	.	+	2	Parent=Os02t0317400-01
Chr02	irgsp1_rep	CDS	12611514	12611591	.	+	1	Parent=Os02t0317400-01
Chr02	irgsp1_rep	CDS	12612839	12612923	.	+	1	Parent=Os02t0317400-01
Chr02	irgsp1_rep	CDS	12613002	12613061	.	+	0	Parent=Os02t0317400-01
Chr02	irgsp1_rep	three_prime_UTR	12613062	12613259	.	+	.	Parent=Os02t0317400-01
Chr02	irgsp1_rep	mRNA	12609112	12611253	.	+	.	ID=Os02t0317400-02;Name=Os02t0317400-02;Locus_id=Os02g0317400;Note=Similar to Coatomer subunit zeta-2.;Transcript_evidence=AK073474 (DDBJ%2C Best hit);ORF_evidence=Q6Z844 (UniProt);NIAS_FLcDNA=J033045O22;Expression=AK073474;TENOR=Os02t0317400-02;KEGG=Os02t0317400-02
Chr02	irgsp1_rep	five_prime_UTR	12609112	12609225	.	+	.	Parent=Os02t0317400-02
Chr02	irgsp1_rep	five_prime_UTR	12609537	12609636	.	+	.	Parent=Os02t0317400-02
Chr02	irgsp1_rep	CDS	12609637	12609654	.	+	0	Parent=Os02t0317400-02
Chr02	irgsp1_rep	CDS	12610291	12610551	.	+	0	Parent=Os02t0317400-02
Chr02	irgsp1_rep	three_prime_UTR	12610552	12611253	.	+	.	Parent=Os02t0317400-02
Chr02	irgsp1_rep	mRNA	12614034	12618437	.	-	.	ID=Os02t0317500-01;Name=Os02t0317500-01;Locus_id=Os02g0317500;Oryzabase Gene Symbol Synonym(s)=OsFbox087%2C OsFbox87%2C Os_F0536;Oryzabase Gene Name Synonym(s)=F-box protein 87;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK102355 (DDBJ%2C Best hit);ORF_evidence=B9F5B1 (UniProt);NIAS_FLcDNA=J033091H09;Oryzabase=16882;Expression=AK102355;TENOR=Os02t0317500-01;KEGG=Os02t0317500-01
Chr02	irgsp1_rep	five_prime_UTR	12618380	12618437	.	-	.	Parent=Os02t0317500-01
Chr02	irgsp1_rep	CDS	12618072	12618379	.	-	0	Parent=Os02t0317500-01
Chr02	irgsp1_rep	CDS	12614260	12614944	.	-	1	Parent=Os02t0317500-01
Chr02	irgsp1_rep	three_prime_UTR	12614034	12614259	.	-	.	Parent=Os02t0317500-01
Chr02	irgsp1_rep	mRNA	12620372	12624397	.	-	.	ID=Os02t0317600-00;Name=Os02t0317600-00;Locus_id=Os02g0317600;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8AG99 (UniProt);TENOR=Os02t0317600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	12624100	12624397	.	-	0	Parent=Os02t0317600-00
Chr02	irgsp1_rep	CDS	12623541	12623603	.	-	2	Parent=Os02t0317600-00
Chr02	irgsp1_rep	CDS	12620372	12620778	.	-	2	Parent=Os02t0317600-00
Chr02	irgsp1_rep	mRNA	12620374	12625515	.	+	.	ID=Os02t0317700-01;Name=Os02t0317700-01;Locus_id=Os02g0317700;Note=Conserved hypothetical protein.;Transcript_evidence=AK068024 (DDBJ%2C Best hit),AK060062 (DDBJ%2C Best hit);ORF_evidence=B8AGA0 (UniProt);NIAS_FLcDNA=J013134E19,006-305-G08;TENOR=Os02t0317700-01
Chr02	irgsp1_rep	five_prime_UTR	12620374	12620445	.	+	.	Parent=Os02t0317700-01
Chr02	irgsp1_rep	CDS	12620446	12620966	.	+	0	Parent=Os02t0317700-01
Chr02	irgsp1_rep	CDS	12621224	12621302	.	+	1	Parent=Os02t0317700-01
Chr02	irgsp1_rep	CDS	12624440	12624505	.	+	0	Parent=Os02t0317700-01
Chr02	irgsp1_rep	CDS	12624956	12625024	.	+	0	Parent=Os02t0317700-01
Chr02	irgsp1_rep	CDS	12625207	12625215	.	+	0	Parent=Os02t0317700-01
Chr02	irgsp1_rep	three_prime_UTR	12625216	12625515	.	+	.	Parent=Os02t0317700-01
Chr02	irgsp1_rep	mRNA	12620374	12622331	.	+	.	ID=Os02t0317700-02;Name=Os02t0317700-02;Locus_id=Os02g0317700;Note=Hypothetical conserved gene.;Transcript_evidence=AK111402 (DDBJ%2C Best hit);ORF_evidence=B8AGA0 (UniProt);NIAS_FLcDNA=002-182-E04;Expression=AK111402;TENOR=Os02t0317700-02;KEGG=Os02t0317700-02
Chr02	irgsp1_rep	five_prime_UTR	12620374	12620445	.	+	.	Parent=Os02t0317700-02
Chr02	irgsp1_rep	CDS	12620446	12620966	.	+	0	Parent=Os02t0317700-02
Chr02	irgsp1_rep	CDS	12621224	12621323	.	+	1	Parent=Os02t0317700-02
Chr02	irgsp1_rep	three_prime_UTR	12621324	12622331	.	+	.	Parent=Os02t0317700-02
Chr02	irgsp1_rep	mRNA	12630108	12633482	.	-	.	ID=Os02t0317800-01;Name=Os02t0317800-01;Locus_id=Os02g0317800;Note=Similar to pollen Ole e 1 allergen and extensin family protein.;Transcript_evidence=AK243319 (DDBJ%2C Best hit);ORF_evidence=NP_568813.1 (RefSeq);InterPro=Pollen Ole e 1 allergen/extensin (IPR006041);NIAS_FLcDNA=J100056L07;TENOR=Os02t0317800-01;KEGG=Os02t0317800-01
Chr02	irgsp1_rep	five_prime_UTR	12633435	12633482	.	-	.	Parent=Os02t0317800-01
Chr02	irgsp1_rep	CDS	12633251	12633434	.	-	0	Parent=Os02t0317800-01
Chr02	irgsp1_rep	CDS	12630306	12630589	.	-	2	Parent=Os02t0317800-01
Chr02	irgsp1_rep	three_prime_UTR	12630108	12630305	.	-	.	Parent=Os02t0317800-01
Chr02	irgsp1_rep	mRNA	12645623	12647595	.	+	.	ID=Os02t0318100-00;Name=Os02t0318100-00;Locus_id=Os02g0318100;Note=Similar to Alternative oxidase.;Transcript_evidence=tplb0005k05 (Wheat FLcDNA);ORF_evidence=A2X418 (UniProt);GO=Biological Process: respiratory gaseous exchange (GO:0007585),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: mitochondrial envelope (GO:0005740);InterPro=Alternative oxidase (IPR002680);TENOR=Os02t0318100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	12645623	12645964	.	+	0	Parent=Os02t0318100-00
Chr02	irgsp1_rep	CDS	12646074	12646202	.	+	0	Parent=Os02t0318100-00
Chr02	irgsp1_rep	CDS	12647005	12647595	.	+	0	Parent=Os02t0318100-00
Chr02	irgsp1_rep	mRNA	12650106	12651398	.	-	.	ID=Os02t0318200-00;Name=Os02t0318200-00;Locus_id=Os02g0318200;Oryzabase Gene Symbol Synonym(s)=Os_F0768;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9F5B4 (UniProt);Oryzabase=17482;TENOR=Os02t0318200-00;KEGG=Os02t0318200-00
Chr02	irgsp1_rep	CDS	12650106	12651398	.	-	0	Parent=Os02t0318200-00
Chr02	irgsp1_rep	mRNA	12656300	12657291	.	-	.	ID=Os02t0318400-01;Name=Os02t0318400-01;Locus_id=Os02g0318400;Note=Conserved hypothetical protein.;Transcript_evidence=AK064642 (DDBJ%2C Best hit);ORF_evidence=A2X421 (UniProt);NIAS_FLcDNA=002-114-B09;Expression=AK064642;TENOR=Os02t0318400-01;KEGG=Os02t0318400-01
Chr02	irgsp1_rep	five_prime_UTR	12657216	12657291	.	-	.	Parent=Os02t0318400-01
Chr02	irgsp1_rep	CDS	12656691	12657215	.	-	0	Parent=Os02t0318400-01
Chr02	irgsp1_rep	three_prime_UTR	12656300	12656690	.	-	.	Parent=Os02t0318400-01
Chr02	irgsp1_rep	mRNA	12664725	12666874	.	-	.	ID=Os02t0318450-00;Name=Os02t0318450-00;Locus_id=Os02g0318450;Note=ABC transporter-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001046678.2 (RefSeq);GO=Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC-2 type transporter (IPR013525);TENOR=Os02t0318450-00
Chr02	irgsp1_rep	CDS	12666545	12666874	.	-	0	Parent=Os02t0318450-00
Chr02	irgsp1_rep	CDS	12666152	12666442	.	-	0	Parent=Os02t0318450-00
Chr02	irgsp1_rep	CDS	12665922	12666005	.	-	0	Parent=Os02t0318450-00
Chr02	irgsp1_rep	CDS	12665631	12665764	.	-	0	Parent=Os02t0318450-00
Chr02	irgsp1_rep	CDS	12665001	12665172	.	-	1	Parent=Os02t0318450-00
Chr02	irgsp1_rep	CDS	12664725	12664745	.	-	0	Parent=Os02t0318450-00
Chr02	irgsp1_rep	mRNA	12668310	12669932	.	-	.	ID=Os02t0318500-00;Name=Os02t0318500-00;Locus_id=Os02g0318500;Oryzabase Gene Symbol Synonym(s)=OsABCG40%2C OsPDR4%2C PDR4;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 40%2C pleiotropic drug resistance 4;Note=ABC transporter-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9F5B6 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887);InterPro=ABC transporter-like (IPR003439),ABC-2 type transporter (IPR013525);Oryzabase=12014;TENOR=Os02t0318500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	12669849	12669932	.	-	0	Parent=Os02t0318500-00
Chr02	irgsp1_rep	CDS	12669462	12669752	.	-	0	Parent=Os02t0318500-00
Chr02	irgsp1_rep	CDS	12669295	12669385	.	-	0	Parent=Os02t0318500-00
Chr02	irgsp1_rep	CDS	12668310	12669217	.	-	2	Parent=Os02t0318500-00
Chr02	irgsp1_rep	mRNA	12680087	12680627	.	-	.	ID=Os02t0318600-00;Name=Os02t0318600-00;Locus_id=Os02g0318600;CGSNL Gene Symbol=PDR4;CGSNL Gene Name=PLEIOTROPIC DRUG RESISTANCE 4;Oryzabase Gene Symbol Synonym(s)=OsPDR4;Oryzabase Gene Name Synonym(s)=pleiotropic drug resistance 4;Note=Similar to PDR-like ABC transporter.;Transcript_evidence=CT835457 (DDBJ%2C Best hit);ORF_evidence=Q8GU85 (UniProt);Oryzabase=13074;TENOR=Os02t0318600-00;KEGG=Os02t0318600-00
Chr02	irgsp1_rep	five_prime_UTR	12680581	12680627	.	-	.	Parent=Os02t0318600-00
Chr02	irgsp1_rep	CDS	12680134	12680580	.	-	0	Parent=Os02t0318600-00
Chr02	irgsp1_rep	three_prime_UTR	12680087	12680133	.	-	.	Parent=Os02t0318600-00
Chr02	irgsp1_rep	mRNA	12693469	12693833	.	+	.	ID=Os02t0318851-00;Name=Os02t0318851-00;Locus_id=Os02g0318851;Note=Non-protein coding transcript.;Transcript_evidence=EU967638 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0318851-00
Chr02	irgsp1_rep	exon	12693469	12693833	.	+	.	Parent=Os02t0318851-00
Chr02	irgsp1_rep	mRNA	12720938	12728873	.	+	.	ID=Os02t0319100-01;Name=Os02t0319100-01;Locus_id=Os02g0319100;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK068695 (DDBJ%2C Best hit);ORF_evidence=Q6EQX3 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),RNA recognition motif 2 (IPR007201),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013160G01;Expression=AK068695;TENOR=Os02t0319100-01;KEGG=Os02t0319100-01
Chr02	irgsp1_rep	five_prime_UTR	12720938	12721222	.	+	.	Parent=Os02t0319100-01
Chr02	irgsp1_rep	five_prime_UTR	12721303	12721377	.	+	.	Parent=Os02t0319100-01
Chr02	irgsp1_rep	five_prime_UTR	12721767	12721776	.	+	.	Parent=Os02t0319100-01
Chr02	irgsp1_rep	CDS	12721777	12721810	.	+	0	Parent=Os02t0319100-01
Chr02	irgsp1_rep	CDS	12721887	12722030	.	+	2	Parent=Os02t0319100-01
Chr02	irgsp1_rep	CDS	12722105	12722568	.	+	2	Parent=Os02t0319100-01
Chr02	irgsp1_rep	CDS	12723973	12724131	.	+	0	Parent=Os02t0319100-01
Chr02	irgsp1_rep	CDS	12724212	12724328	.	+	0	Parent=Os02t0319100-01
Chr02	irgsp1_rep	CDS	12724474	12724625	.	+	0	Parent=Os02t0319100-01
Chr02	irgsp1_rep	CDS	12725498	12725589	.	+	1	Parent=Os02t0319100-01
Chr02	irgsp1_rep	CDS	12725691	12726368	.	+	2	Parent=Os02t0319100-01
Chr02	irgsp1_rep	CDS	12726455	12726617	.	+	2	Parent=Os02t0319100-01
Chr02	irgsp1_rep	CDS	12726708	12726792	.	+	1	Parent=Os02t0319100-01
Chr02	irgsp1_rep	CDS	12726873	12726941	.	+	0	Parent=Os02t0319100-01
Chr02	irgsp1_rep	CDS	12727393	12727572	.	+	0	Parent=Os02t0319100-01
Chr02	irgsp1_rep	CDS	12728430	12728528	.	+	0	Parent=Os02t0319100-01
Chr02	irgsp1_rep	three_prime_UTR	12728529	12728873	.	+	.	Parent=Os02t0319100-01
Chr02	irgsp1_rep	mRNA	12731587	12732144	.	-	.	ID=Os02t0319300-01;Name=Os02t0319300-01;Locus_id=Os02g0319300;Note=Glutathione S-transferase%2C C-terminal-like domain containing protein.;Transcript_evidence=AK105036 (DDBJ%2C Best hit);ORF_evidence=B6T7B6 (UniProt);InterPro=Glutathione S-transferase%2C C-terminal-like (IPR010987);NIAS_FLcDNA=001-032-B07;Expression=AK105036;TENOR=Os02t0319300-01;KEGG=Os02t0319300-01
Chr02	irgsp1_rep	five_prime_UTR	12732143	12732144	.	-	.	Parent=Os02t0319300-01
Chr02	irgsp1_rep	CDS	12731909	12732142	.	-	0	Parent=Os02t0319300-01
Chr02	irgsp1_rep	three_prime_UTR	12731587	12731908	.	-	.	Parent=Os02t0319300-01
Chr02	irgsp1_rep	mRNA	12735765	12736174	.	-	.	ID=Os02t0319400-01;Name=Os02t0319400-01;Locus_id=Os02g0319400;Note=Hypothetical protein.;Transcript_evidence=AK062879 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-108-D03;Expression=AK062879;TENOR=Os02t0319400-01;KEGG=Os02t0319400-01
Chr02	irgsp1_rep	CDS	12735908	12736174	.	-	0	Parent=Os02t0319400-01
Chr02	irgsp1_rep	three_prime_UTR	12735765	12735907	.	-	.	Parent=Os02t0319400-01
Chr02	irgsp1_rep	mRNA	12741615	12746536	.	-	.	ID=Os02t0319800-01;Name=Os02t0319800-01;Locus_id=Os02g0319800;Oryzabase Gene Symbol Synonym(s)=OsWD40-43;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK111750 (DDBJ%2C Best hit);ORF_evidence=B6STM0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J023052C02;Oryzabase=10724;Expression=AK111750;TENOR=Os02t0319800-01;KEGG=Os02t0319800-01
Chr02	irgsp1_rep	five_prime_UTR	12746301	12746536	.	-	.	Parent=Os02t0319800-01
Chr02	irgsp1_rep	CDS	12745964	12746300	.	-	0	Parent=Os02t0319800-01
Chr02	irgsp1_rep	CDS	12745288	12745449	.	-	2	Parent=Os02t0319800-01
Chr02	irgsp1_rep	CDS	12742756	12743240	.	-	2	Parent=Os02t0319800-01
Chr02	irgsp1_rep	CDS	12741637	12742008	.	-	0	Parent=Os02t0319800-01
Chr02	irgsp1_rep	three_prime_UTR	12741615	12741636	.	-	.	Parent=Os02t0319800-01
Chr02	irgsp1_rep	mRNA	12752588	12755804	.	+	.	ID=Os02t0320000-00;Name=Os02t0320000-00;Locus_id=Os02g0320000;Note=Cupin%2C RmlC-type domain containing protein.;Transcript_evidence=EU965644 (DDBJ);ORF_evidence=F1BLB2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: cysteamine dioxygenase activity (GO:0047800);InterPro=Cupin%2C RmlC-type (IPR011051),Cysteamine dioxygenase (IPR012864),RmlC-like jelly roll fold (IPR014710);TENOR=Os02t0320000-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	12752588	12752750	.	+	.	Parent=Os02t0320000-00
Chr02	irgsp1_rep	five_prime_UTR	12752907	12752912	.	+	.	Parent=Os02t0320000-00
Chr02	irgsp1_rep	CDS	12752913	12753059	.	+	0	Parent=Os02t0320000-00
Chr02	irgsp1_rep	CDS	12753163	12753304	.	+	0	Parent=Os02t0320000-00
Chr02	irgsp1_rep	CDS	12754955	12755164	.	+	2	Parent=Os02t0320000-00
Chr02	irgsp1_rep	CDS	12755660	12755790	.	+	2	Parent=Os02t0320000-00
Chr02	irgsp1_rep	three_prime_UTR	12755791	12755804	.	+	.	Parent=Os02t0320000-00
Chr02	irgsp1_rep	mRNA	12758253	12762205	.	-	.	ID=Os02t0320100-01;Name=Os02t0320100-01;Locus_id=Os02g0320100;Oryzabase Gene Symbol Synonym(s)=ROX2;Oryzabase Gene Name Synonym(s)=Regulator of XA21-2;Note=Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p domain containing protein.;Transcript_evidence=AK103173 (DDBJ%2C Best hit);ORF_evidence=NP_001150625.1 (RefSeq);InterPro=Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (IPR001678),RNA (C5-cytosine) methyltransferase (IPR023267),RNA (C5-cytosine) methyltransferase%2C subfamily 9 (IPR023269);NIAS_FLcDNA=J033121G21;Oryzabase=9789;Expression=AK103173;TENOR=Os02t0320100-01;KEGG=Os02t0320100-01
Chr02	irgsp1_rep	five_prime_UTR	12761860	12762205	.	-	.	Parent=Os02t0320100-01
Chr02	irgsp1_rep	CDS	12761741	12761859	.	-	0	Parent=Os02t0320100-01
Chr02	irgsp1_rep	CDS	12761470	12761614	.	-	1	Parent=Os02t0320100-01
Chr02	irgsp1_rep	CDS	12761027	12761117	.	-	0	Parent=Os02t0320100-01
Chr02	irgsp1_rep	CDS	12760355	12760552	.	-	2	Parent=Os02t0320100-01
Chr02	irgsp1_rep	CDS	12760020	12760255	.	-	2	Parent=Os02t0320100-01
Chr02	irgsp1_rep	CDS	12759263	12759394	.	-	0	Parent=Os02t0320100-01
Chr02	irgsp1_rep	CDS	12759056	12759127	.	-	0	Parent=Os02t0320100-01
Chr02	irgsp1_rep	three_prime_UTR	12758253	12759055	.	-	.	Parent=Os02t0320100-01
Chr02	irgsp1_rep	mRNA	12765282	12772010	.	+	.	ID=Os02t0320300-01;Name=Os02t0320300-01;Locus_id=Os02g0320300;Note=Similar to Chalcone isomerase 3.;Transcript_evidence=AK067650 (DDBJ%2C Best hit);ORF_evidence=B6U5H8 (UniProt);GO=Biological Process: flavonoid biosynthetic process (GO:0009813),Biological Process: cellular modified amino acid biosynthetic process (GO:0042398),Molecular Function: intramolecular lyase activity (GO:0016872),Molecular Function: chalcone isomerase activity (GO:0045430);InterPro=Chalcone isomerase%2C subgroup (IPR003466),Chalcone isomerase (IPR016087),Chalcone isomerase%2C 3-layer sandwich (IPR016088);NIAS_FLcDNA=J013112A05;Expression=AK067650;TENOR=Os02t0320300-01;KEGG=Os02t0320300-01
Chr02	irgsp1_rep	five_prime_UTR	12765282	12765344	.	+	.	Parent=Os02t0320300-01
Chr02	irgsp1_rep	CDS	12765345	12765567	.	+	0	Parent=Os02t0320300-01
Chr02	irgsp1_rep	CDS	12767871	12767969	.	+	2	Parent=Os02t0320300-01
Chr02	irgsp1_rep	CDS	12770065	12770208	.	+	2	Parent=Os02t0320300-01
Chr02	irgsp1_rep	CDS	12770280	12770494	.	+	2	Parent=Os02t0320300-01
Chr02	irgsp1_rep	CDS	12771648	12771809	.	+	0	Parent=Os02t0320300-01
Chr02	irgsp1_rep	three_prime_UTR	12771810	12772010	.	+	.	Parent=Os02t0320300-01
Chr02	irgsp1_rep	mRNA	12777819	12778430	.	+	.	ID=Os02t0320600-00;Name=Os02t0320600-00;Locus_id=Os02g0320600;Note=Hypothetical conserved gene.;Transcript_evidence=BT063373 (DDBJ);ORF_evidence=Q6EQW0 (UniProt);TENOR=Os02t0320600-00;KEGG=Os02t0320600-00
Chr02	irgsp1_rep	CDS	12777819	12778430	.	+	0	Parent=Os02t0320600-00
Chr02	irgsp1_rep	mRNA	12788668	12790746	.	+	.	ID=Os02t0320800-01;Name=Os02t0320800-01;Locus_id=Os02g0320800;CGSNL Gene Symbol=HSL3;Oryzabase Gene Symbol Synonym(s)=OsHSL3;Oryzabase Gene Name Synonym(s)=HIS1-like gene 3;Note=Similar to Iron/ascorbate-dependent oxidoreductase.;Transcript_evidence=AK111474 (DDBJ%2C Best hit);ORF_evidence=B8AGN6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=002-183-F04;Oryzabase=23604;Expression=AK111474;TENOR=Os02t0320800-01;KEGG=Os02t0320800-01
Chr02	irgsp1_rep	five_prime_UTR	12788668	12788721	.	+	.	Parent=Os02t0320800-01
Chr02	irgsp1_rep	CDS	12788722	12788940	.	+	0	Parent=Os02t0320800-01
Chr02	irgsp1_rep	CDS	12789033	12789292	.	+	0	Parent=Os02t0320800-01
Chr02	irgsp1_rep	CDS	12789773	12790109	.	+	1	Parent=Os02t0320800-01
Chr02	irgsp1_rep	CDS	12790361	12790453	.	+	0	Parent=Os02t0320800-01
Chr02	irgsp1_rep	three_prime_UTR	12790454	12790746	.	+	.	Parent=Os02t0320800-01
Chr02	irgsp1_rep	mRNA	12809571	12817274	.	-	.	ID=Os02t0321000-01;Name=Os02t0321000-01;Locus_id=Os02g0321000;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK121840 (DDBJ%2C Best hit);ORF_evidence=NP_001147934.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033101B22;Expression=AK121840;TENOR=Os02t0321000-01;KEGG=Os02t0321000-01
Chr02	irgsp1_rep	five_prime_UTR	12817143	12817274	.	-	.	Parent=Os02t0321000-01
Chr02	irgsp1_rep	CDS	12815514	12817142	.	-	0	Parent=Os02t0321000-01
Chr02	irgsp1_rep	three_prime_UTR	12815457	12815513	.	-	.	Parent=Os02t0321000-01
Chr02	irgsp1_rep	three_prime_UTR	12813672	12813740	.	-	.	Parent=Os02t0321000-01
Chr02	irgsp1_rep	three_prime_UTR	12813352	12813588	.	-	.	Parent=Os02t0321000-01
Chr02	irgsp1_rep	three_prime_UTR	12813071	12813215	.	-	.	Parent=Os02t0321000-01
Chr02	irgsp1_rep	three_prime_UTR	12811950	12812590	.	-	.	Parent=Os02t0321000-01
Chr02	irgsp1_rep	three_prime_UTR	12809571	12809990	.	-	.	Parent=Os02t0321000-01
Chr02	irgsp1_rep	mRNA	12846471	12851443	.	+	.	ID=Os02t0321500-01;Name=Os02t0321500-01;Locus_id=Os02g0321500;Note=Cellular retinaldehyde-binding/triple function%2C C-terminal domain containing protein.;Transcript_evidence=AK064540 (DDBJ%2C Best hit);ORF_evidence=B6TMX5 (UniProt);InterPro=Cellular retinaldehyde-binding/triple function%2C C-terminal (IPR001251),Phosphatidylinositol transfer protein-like%2C N-terminal (IPR011074);NIAS_FLcDNA=002-112-A04;Expression=AK064540;TENOR=Os02t0321500-01;KEGG=Os02t0321500-01
Chr02	irgsp1_rep	five_prime_UTR	12846471	12846883	.	+	.	Parent=Os02t0321500-01
Chr02	irgsp1_rep	CDS	12846884	12847015	.	+	0	Parent=Os02t0321500-01
Chr02	irgsp1_rep	CDS	12847115	12847267	.	+	0	Parent=Os02t0321500-01
Chr02	irgsp1_rep	CDS	12847858	12848004	.	+	0	Parent=Os02t0321500-01
Chr02	irgsp1_rep	CDS	12848303	12848455	.	+	0	Parent=Os02t0321500-01
Chr02	irgsp1_rep	CDS	12850589	12850711	.	+	0	Parent=Os02t0321500-01
Chr02	irgsp1_rep	CDS	12850803	12850880	.	+	0	Parent=Os02t0321500-01
Chr02	irgsp1_rep	three_prime_UTR	12850881	12850956	.	+	.	Parent=Os02t0321500-01
Chr02	irgsp1_rep	three_prime_UTR	12851130	12851443	.	+	.	Parent=Os02t0321500-01
Chr02	irgsp1_rep	mRNA	12852011	12852961	.	+	.	ID=Os02t0321600-01;Name=Os02t0321600-01;Locus_id=Os02g0321600;Note=Conserved hypothetical protein.;Transcript_evidence=AK108146 (DDBJ%2C Best hit);ORF_evidence=A2X449 (UniProt);NIAS_FLcDNA=002-139-F04;Expression=AK108146;TENOR=Os02t0321600-01;KEGG=Os02t0321600-01
Chr02	irgsp1_rep	five_prime_UTR	12852011	12852121	.	+	.	Parent=Os02t0321600-01
Chr02	irgsp1_rep	CDS	12852122	12852508	.	+	0	Parent=Os02t0321600-01
Chr02	irgsp1_rep	CDS	12852660	12852704	.	+	0	Parent=Os02t0321600-01
Chr02	irgsp1_rep	three_prime_UTR	12852705	12852961	.	+	.	Parent=Os02t0321600-01
Chr02	irgsp1_rep	mRNA	12859814	12864036	.	+	.	ID=Os02t0321800-01;Name=Os02t0321800-01;Locus_id=Os02g0321800;Note=B-cell receptor-associated 31-like family protein.;Transcript_evidence=AK070852 (DDBJ%2C Best hit);ORF_evidence=B6TG43 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Cellular Component: endoplasmic reticulum (GO:0005783),Cellular Component: integral to membrane (GO:0016021);InterPro=B-cell receptor-associated 31-like (IPR008417);NIAS_FLcDNA=J023065A17;Expression=AK070852;TENOR=Os02t0321800-01;KEGG=Os02t0321800-01
Chr02	irgsp1_rep	five_prime_UTR	12859814	12860004	.	+	.	Parent=Os02t0321800-01
Chr02	irgsp1_rep	CDS	12860005	12860317	.	+	0	Parent=Os02t0321800-01
Chr02	irgsp1_rep	CDS	12863354	12863721	.	+	2	Parent=Os02t0321800-01
Chr02	irgsp1_rep	three_prime_UTR	12863722	12864036	.	+	.	Parent=Os02t0321800-01
Chr02	irgsp1_rep	mRNA	12859916	12861024	.	+	.	ID=Os02t0321800-02;Name=Os02t0321800-02;Locus_id=Os02g0321800;Note=Similar to B-cell receptor-associated protein 31-like containing protein.;Transcript_evidence=AK067188 (DDBJ%2C Best hit);ORF_evidence=B6TG43 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Cellular Component: endoplasmic reticulum (GO:0005783),Cellular Component: integral to membrane (GO:0016021);InterPro=B-cell receptor-associated 31-like (IPR008417);NIAS_FLcDNA=J013094K24;Expression=AK067188;TENOR=Os02t0321800-02;KEGG=Os02t0321800-02
Chr02	irgsp1_rep	five_prime_UTR	12859916	12860004	.	+	.	Parent=Os02t0321800-02
Chr02	irgsp1_rep	CDS	12860005	12860490	.	+	0	Parent=Os02t0321800-02
Chr02	irgsp1_rep	three_prime_UTR	12860491	12861024	.	+	.	Parent=Os02t0321800-02
Chr02	irgsp1_rep	mRNA	12869461	12871225	.	+	.	ID=Os02t0321900-01;Name=Os02t0321900-01;Locus_id=Os02g0321900;Note=Similar to Ribosomal protein L1.;Transcript_evidence=AK058256 (DDBJ%2C Best hit);ORF_evidence=B7F9R7 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: large ribosomal subunit (GO:0015934),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L1 (IPR002143),Ribosomal protein L1%2C 2-layer alpha/beta-sandwich (IPR016094),Ribosomal protein L1%2C 3-layer alpha/beta-sandwich (IPR016095),Ribosomal protein L1%2C superfamily (IPR023674);NIAS_FLcDNA=001-012-D04;Expression=AK058256;TENOR=Os02t0321900-01;KEGG=Os02t0321900-01
Chr02	irgsp1_rep	five_prime_UTR	12869461	12869504	.	+	.	Parent=Os02t0321900-01
Chr02	irgsp1_rep	five_prime_UTR	12869611	12869638	.	+	.	Parent=Os02t0321900-01
Chr02	irgsp1_rep	CDS	12869639	12869643	.	+	0	Parent=Os02t0321900-01
Chr02	irgsp1_rep	CDS	12870480	12870699	.	+	1	Parent=Os02t0321900-01
Chr02	irgsp1_rep	CDS	12871184	12871225	.	+	0	Parent=Os02t0321900-01
Chr02	irgsp1_rep	mRNA	12869461	12872315	.	+	.	ID=Os02t0321900-02;Name=Os02t0321900-02;Locus_id=Os02g0321900;Note=Similar to 60S ribosomal protein L10a-1.;Transcript_evidence=AK102574 (DDBJ%2C Best hit),AK062103 (DDBJ%2C Best hit);ORF_evidence=B7F9R7 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: large ribosomal subunit (GO:0015934),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L1 (IPR002143),Ribosomal protein L1%2C 2-layer alpha/beta-sandwich (IPR016094),Ribosomal protein L1%2C 3-layer alpha/beta-sandwich (IPR016095),Ribosomal protein L1%2C conserved site (IPR023673),Ribosomal protein L1%2C superfamily (IPR023674);NIAS_FLcDNA=J033097O05,001-045-A11;Expression=AK102574;TENOR=Os02t0321900-02;KEGG=Os02t0321900-02
Chr02	irgsp1_rep	five_prime_UTR	12869461	12869504	.	+	.	Parent=Os02t0321900-02
Chr02	irgsp1_rep	five_prime_UTR	12869611	12869638	.	+	.	Parent=Os02t0321900-02
Chr02	irgsp1_rep	CDS	12869639	12869643	.	+	0	Parent=Os02t0321900-02
Chr02	irgsp1_rep	CDS	12870480	12870699	.	+	1	Parent=Os02t0321900-02
Chr02	irgsp1_rep	CDS	12871184	12871345	.	+	0	Parent=Os02t0321900-02
Chr02	irgsp1_rep	CDS	12871753	12871962	.	+	0	Parent=Os02t0321900-02
Chr02	irgsp1_rep	CDS	12872070	12872123	.	+	0	Parent=Os02t0321900-02
Chr02	irgsp1_rep	three_prime_UTR	12872124	12872315	.	+	.	Parent=Os02t0321900-02
Chr02	irgsp1_rep	mRNA	12893592	12894722	.	-	.	ID=Os02t0322251-00;Name=Os02t0322251-00;Locus_id=Os02g0322251;Note=Hypothetical protein.;Transcript_evidence=tplb0040o12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0322251-00
Chr02	irgsp1_rep	five_prime_UTR	12894721	12894722	.	-	.	Parent=Os02t0322251-00
Chr02	irgsp1_rep	CDS	12893592	12894720	.	-	0	Parent=Os02t0322251-00
Chr02	irgsp1_rep	mRNA	12893632	12894978	.	+	.	ID=Os02t0322400-00;Name=Os02t0322400-00;Locus_id=Os02g0322400;Note=Similar to NPKL2 (Fragment).;Transcript_evidence=ab initio prediction;ORF_evidence=B8AGL3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os02t0322400-00;KEGG=Os02t0322400-00
Chr02	irgsp1_rep	CDS	12893632	12894978	.	+	0	Parent=Os02t0322400-00
Chr02	irgsp1_rep	mRNA	12903043	12905272	.	+	.	ID=Os02t0322500-01;Name=Os02t0322500-01;Locus_id=Os02g0322500;Note=Non-protein coding transcript.;Transcript_evidence=AK061382 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=006-304-H04;TENOR=Os02t0322500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	exon	12903043	12903333	.	+	.	Parent=Os02t0322500-01
Chr02	irgsp1_rep	exon	12904466	12905272	.	+	.	Parent=Os02t0322500-01
Chr02	irgsp1_rep	mRNA	12923864	12927803	.	-	.	ID=Os02t0323000-01;Name=Os02t0323000-01;Locus_id=Os02g0323000;CGSNL Gene Symbol=ABCB10;CGSNL Gene Name=ABC TRANSPORTER B FAMILY MEMBER 10;Oryzabase Gene Symbol Synonym(s)=OsABCB10%2C OsPGP10;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCB subgroup member 10%2C P-Glycoprotein 10;Note=Similar to Felis catus multi-drug resistance related (Fragment).;Transcript_evidence=AK064221 (DDBJ%2C Best hit);ORF_evidence=Q6Z6U9 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C integral membrane type 1 (IPR017940);NIAS_FLcDNA=002-104-G01;Oryzabase=11929;Expression=AK064221;TENOR=Os02t0323000-01;KEGG=Os02t0323000-01
Chr02	irgsp1_rep	CDS	12927726	12927803	.	-	0	Parent=Os02t0323000-01
Chr02	irgsp1_rep	CDS	12927313	12927586	.	-	0	Parent=Os02t0323000-01
Chr02	irgsp1_rep	CDS	12926518	12927199	.	-	2	Parent=Os02t0323000-01
Chr02	irgsp1_rep	CDS	12926204	12926433	.	-	1	Parent=Os02t0323000-01
Chr02	irgsp1_rep	CDS	12926113	12926120	.	-	2	Parent=Os02t0323000-01
Chr02	irgsp1_rep	three_prime_UTR	12925857	12926112	.	-	.	Parent=Os02t0323000-01
Chr02	irgsp1_rep	three_prime_UTR	12925493	12925774	.	-	.	Parent=Os02t0323000-01
Chr02	irgsp1_rep	three_prime_UTR	12923864	12924651	.	-	.	Parent=Os02t0323000-01
Chr02	irgsp1_rep	mRNA	12929556	12931919	.	+	.	ID=Os02t0323300-00;Name=Os02t0323300-00;Locus_id=Os02g0323300;Note=Hypothetical protein.;Transcript_evidence=BT035604 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0323300-00
Chr02	irgsp1_rep	five_prime_UTR	12929556	12929570	.	+	.	Parent=Os02t0323300-00
Chr02	irgsp1_rep	CDS	12929571	12929759	.	+	0	Parent=Os02t0323300-00
Chr02	irgsp1_rep	CDS	12931674	12931919	.	+	0	Parent=Os02t0323300-00
Chr02	irgsp1_rep	mRNA	12970223	12972230	.	+	.	ID=Os02t0323600-01;Name=Os02t0323600-01;Locus_id=Os02g0323600;CGSNL Gene Symbol=CYP51H4;CGSNL Gene Name=P-450 51H4;Oryzabase Gene Symbol Synonym(s)=OsCYP51H4;Oryzabase Gene Name Synonym(s)=CytoChrome P450 51H4;Note=Similar to CytoChrome P450-like protein.;Transcript_evidence=AK065792 (DDBJ%2C Best hit);ORF_evidence=B4FKF8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: monooxygenase activity (GO:0004497),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group IV (IPR002403),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J013040I18;Oryzabase=17993;Expression=AK065792;TENOR=Os02t0323600-01;KEGG=Os02t0323600-01 (EC:1.14.13.70)
Chr02	irgsp1_rep	five_prime_UTR	12970223	12970284	.	+	.	Parent=Os02t0323600-01
Chr02	irgsp1_rep	CDS	12970285	12970765	.	+	0	Parent=Os02t0323600-01
Chr02	irgsp1_rep	CDS	12970863	12971896	.	+	2	Parent=Os02t0323600-01
Chr02	irgsp1_rep	three_prime_UTR	12971897	12972230	.	+	.	Parent=Os02t0323600-01
Chr02	irgsp1_rep	mRNA	13002652	13005194	.	-	.	ID=Os02t0324200-01;Name=Os02t0324200-01;Locus_id=Os02g0324200;Note=Conserved hypothetical protein.;Transcript_evidence=AK070063 (DDBJ%2C Best hit);ORF_evidence=B9F5D3 (UniProt);NIAS_FLcDNA=J023042J10;TENOR=Os02t0324200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	13005092	13005194	.	-	.	Parent=Os02t0324200-01
Chr02	irgsp1_rep	five_prime_UTR	13004803	13005001	.	-	.	Parent=Os02t0324200-01
Chr02	irgsp1_rep	CDS	13004581	13004802	.	-	0	Parent=Os02t0324200-01
Chr02	irgsp1_rep	three_prime_UTR	13004453	13004580	.	-	.	Parent=Os02t0324200-01
Chr02	irgsp1_rep	three_prime_UTR	13002652	13003794	.	-	.	Parent=Os02t0324200-01
Chr02	irgsp1_rep	mRNA	13007000	13013048	.	+	.	ID=Os02t0324300-01;Name=Os02t0324300-01;Locus_id=Os02g0324300;Note=Protein of unknown function DUF572 family protein.;Transcript_evidence=AK068494 (DDBJ%2C Best hit);ORF_evidence=B6TAZ7 (UniProt);InterPro=CWC16 protein (IPR007590);NIAS_FLcDNA=J013156M22;Expression=AK068494;TENOR=Os02t0324300-01;KEGG=Os02t0324300-01
Chr02	irgsp1_rep	five_prime_UTR	13007000	13007146	.	+	.	Parent=Os02t0324300-01
Chr02	irgsp1_rep	CDS	13007147	13007149	.	+	0	Parent=Os02t0324300-01
Chr02	irgsp1_rep	CDS	13007343	13007405	.	+	0	Parent=Os02t0324300-01
Chr02	irgsp1_rep	CDS	13007512	13007591	.	+	0	Parent=Os02t0324300-01
Chr02	irgsp1_rep	CDS	13008868	13008976	.	+	1	Parent=Os02t0324300-01
Chr02	irgsp1_rep	CDS	13011948	13012107	.	+	0	Parent=Os02t0324300-01
Chr02	irgsp1_rep	CDS	13012199	13012362	.	+	2	Parent=Os02t0324300-01
Chr02	irgsp1_rep	CDS	13012453	13012806	.	+	0	Parent=Os02t0324300-01
Chr02	irgsp1_rep	three_prime_UTR	13012807	13013048	.	+	.	Parent=Os02t0324300-01
Chr02	irgsp1_rep	mRNA	13014487	13015524	.	+	.	ID=Os02t0324400-01;Name=Os02t0324400-01;Locus_id=Os02g0324400;RAP-DB Gene Symbol Synonym(s)=FOS1%2C OsCLE202%2C CLE202;RAP-DB Gene Name Synonym(s)=FON2 SPARE1%2C CLV3/ESR-related 202%2C CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 202;Oryzabase Gene Symbol Synonym(s)=FOS1%2C OsCLE202%2C CLE202;Oryzabase Gene Name Synonym(s)=FON2 SPARE1%2C CLV3/ESR-related 202%2C CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 202;Note=Secreted protein with a CLE domain%2C Maintenance of the floral meristem (FM) and the vegetative shoot apical meristem (SAM);Transcript_evidence=AK061156,AB455109,AB332053;ORF_evidence=Q6Z6T2;NIAS_FLcDNA=006-208-G04;Manual Curation=November 18%2C 2015;Literature_PMID=19834537,17991631;Oryzabase=12270;Expression=AK061156;TENOR=Os02t0324400-01;KEGG=Os02t0324400-01
Chr02	irgsp1_rep	five_prime_UTR	13014487	13014869	.	+	.	Parent=Os02t0324400-01
Chr02	irgsp1_rep	CDS	13014870	13015265	.	+	0	Parent=Os02t0324400-01
Chr02	irgsp1_rep	three_prime_UTR	13015266	13015524	.	+	.	Parent=Os02t0324400-01
Chr02	irgsp1_rep	mRNA	13024991	13027049	.	-	.	ID=Os02t0324500-00;Name=Os02t0324500-00;Locus_id=Os02g0324500;Oryzabase Gene Symbol Synonym(s)=RPS7%2C OsRPS7;Oryzabase Gene Name Synonym(s)=ribosomal protein S7%2C ribosomal protein small subunit 7;Note=Similar to Ribosomal protein S7.;Transcript_evidence=FP093458 (DDBJ);ORF_evidence=Q5I7K2 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S7e (IPR000554);Oryzabase=22171;TENOR=Os02t0324500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	13026980	13027049	.	-	.	Parent=Os02t0324500-00
Chr02	irgsp1_rep	five_prime_UTR	13026793	13026885	.	-	.	Parent=Os02t0324500-00
Chr02	irgsp1_rep	five_prime_UTR	13026509	13026648	.	-	.	Parent=Os02t0324500-00
Chr02	irgsp1_rep	CDS	13026329	13026508	.	-	0	Parent=Os02t0324500-00
Chr02	irgsp1_rep	CDS	13025543	13025704	.	-	0	Parent=Os02t0324500-00
Chr02	irgsp1_rep	three_prime_UTR	13025525	13025542	.	-	.	Parent=Os02t0324500-00
Chr02	irgsp1_rep	three_prime_UTR	13024991	13025248	.	-	.	Parent=Os02t0324500-00
Chr02	irgsp1_rep	mRNA	13039013	13040252	.	+	.	ID=Os02t0324700-01;Name=Os02t0324700-01;Locus_id=Os02g0324700;Note=Similar to senescence-associated protein.;Transcript_evidence=AK104437 (DDBJ%2C Best hit),AK060405 (DDBJ%2C Best hit);ORF_evidence=NP_001152495.1 (RefSeq);NIAS_FLcDNA=006-209-A02,001-010-D04;TENOR=Os02t0324700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	13039013	13039340	.	+	.	Parent=Os02t0324700-01
Chr02	irgsp1_rep	CDS	13039341	13039701	.	+	0	Parent=Os02t0324700-01
Chr02	irgsp1_rep	CDS	13039800	13040002	.	+	2	Parent=Os02t0324700-01
Chr02	irgsp1_rep	three_prime_UTR	13040003	13040252	.	+	.	Parent=Os02t0324700-01
Chr02	irgsp1_rep	mRNA	13059150	13063734	.	+	.	ID=Os02t0325100-01;Name=Os02t0325100-01;Locus_id=Os02g0325100;CGSNL Gene Symbol=RPT3;CGSNL Gene Name=19S REGULATORY PARTICLE ATPASE SUBUNIT 3;Oryzabase Gene Symbol Synonym(s)=OsRpt3%2C Rpt3;Oryzabase Gene Name Synonym(s)=19S regulatory particle ATPase subunit 3%2C RP triple A-ATPase 3;Note=Similar to 26S protease regulatory subunit 6B (MIP224) (MB67 interacting protein) (TAT-binding protein-7) (TBP-7).;Transcript_evidence=AK071476 (DDBJ%2C Best hit);ORF_evidence=B6TRH7 (UniProt);GO=Biological Process: protein catabolic process (GO:0030163),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960),26S proteasome subunit P45 (IPR005937);NIAS_FLcDNA=J023091H23;Oryzabase=20556;Expression=AK071476;TENOR=Os02t0325100-01;KEGG=Os02t0325100-01
Chr02	irgsp1_rep	five_prime_UTR	13059150	13059196	.	+	.	Parent=Os02t0325100-01
Chr02	irgsp1_rep	CDS	13059197	13059694	.	+	0	Parent=Os02t0325100-01
Chr02	irgsp1_rep	CDS	13060256	13060486	.	+	0	Parent=Os02t0325100-01
Chr02	irgsp1_rep	CDS	13060987	13061145	.	+	0	Parent=Os02t0325100-01
Chr02	irgsp1_rep	CDS	13061387	13061539	.	+	0	Parent=Os02t0325100-01
Chr02	irgsp1_rep	CDS	13062523	13062606	.	+	0	Parent=Os02t0325100-01
Chr02	irgsp1_rep	CDS	13063391	13063525	.	+	0	Parent=Os02t0325100-01
Chr02	irgsp1_rep	three_prime_UTR	13063526	13063734	.	+	.	Parent=Os02t0325100-01
Chr02	irgsp1_rep	mRNA	13059398	13063759	.	+	.	ID=Os02t0325100-02;Name=Os02t0325100-02;Locus_id=Os02g0325100;CGSNL Gene Symbol=RPT3;CGSNL Gene Name=19S REGULATORY PARTICLE ATPASE SUBUNIT 3;Oryzabase Gene Symbol Synonym(s)=OsRpt3%2C Rpt3;Oryzabase Gene Name Synonym(s)=19S regulatory particle ATPase subunit 3%2C RP triple A-ATPase 3;Note=Similar to 26S proteasome regulatory particle triple-A ATPase subunit3 (Fragment).;Transcript_evidence=AK059237 (DDBJ%2C Best hit);ORF_evidence=Q8W3N9 (UniProt);GO=Biological Process: protein catabolic process (GO:0030163),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960),26S proteasome subunit P45 (IPR005937);NIAS_FLcDNA=001-024-F02;Oryzabase=20556;Expression=AK059237;TENOR=Os02t0325100-02;KEGG=Os02t0325100-02
Chr02	irgsp1_rep	CDS	13059398	13059694	.	+	0	Parent=Os02t0325100-02
Chr02	irgsp1_rep	CDS	13060256	13060486	.	+	0	Parent=Os02t0325100-02
Chr02	irgsp1_rep	CDS	13060987	13061145	.	+	0	Parent=Os02t0325100-02
Chr02	irgsp1_rep	CDS	13061387	13061539	.	+	0	Parent=Os02t0325100-02
Chr02	irgsp1_rep	CDS	13062523	13062606	.	+	0	Parent=Os02t0325100-02
Chr02	irgsp1_rep	CDS	13063391	13063525	.	+	0	Parent=Os02t0325100-02
Chr02	irgsp1_rep	three_prime_UTR	13063526	13063759	.	+	.	Parent=Os02t0325100-02
Chr02	irgsp1_rep	mRNA	13069307	13077970	.	-	.	ID=Os02t0325300-00;Name=Os02t0325300-00;Locus_id=Os02g0325300;Note=Similar to autoinhibited H+ ATPase.;Transcript_evidence=ab initio prediction;ORF_evidence=XP_002307856.1 (RefSeq);TENOR=Os02t0325300-00
Chr02	irgsp1_rep	CDS	13077659	13077970	.	-	0	Parent=Os02t0325300-00
Chr02	irgsp1_rep	CDS	13071762	13071839	.	-	0	Parent=Os02t0325300-00
Chr02	irgsp1_rep	CDS	13069429	13069563	.	-	0	Parent=Os02t0325300-00
Chr02	irgsp1_rep	CDS	13069307	13069336	.	-	0	Parent=Os02t0325300-00
Chr02	irgsp1_rep	mRNA	13084011	13089153	.	+	.	ID=Os02t0325401-01;Name=Os02t0325401-01;Locus_id=Os02g0325401;Note=Phosphoglycerate mutase domain containing protein.;Transcript_evidence=AK240952 (DDBJ%2C Best hit);ORF_evidence=Q2RAT6 (UniProt);InterPro=Histidine phosphatase superfamily%2C clade-1 (IPR013078);NIAS_FLcDNA=J065043O18;TENOR=Os02t0325401-01;KEGG=Os02t0325401-01
Chr02	irgsp1_rep	five_prime_UTR	13084011	13084089	.	+	.	Parent=Os02t0325401-01
Chr02	irgsp1_rep	five_prime_UTR	13084718	13084734	.	+	.	Parent=Os02t0325401-01
Chr02	irgsp1_rep	CDS	13084735	13084761	.	+	0	Parent=Os02t0325401-01
Chr02	irgsp1_rep	CDS	13084908	13085018	.	+	0	Parent=Os02t0325401-01
Chr02	irgsp1_rep	CDS	13085082	13085156	.	+	0	Parent=Os02t0325401-01
Chr02	irgsp1_rep	three_prime_UTR	13085157	13085242	.	+	.	Parent=Os02t0325401-01
Chr02	irgsp1_rep	three_prime_UTR	13086733	13086905	.	+	.	Parent=Os02t0325401-01
Chr02	irgsp1_rep	three_prime_UTR	13088329	13088525	.	+	.	Parent=Os02t0325401-01
Chr02	irgsp1_rep	three_prime_UTR	13088813	13089153	.	+	.	Parent=Os02t0325401-01
Chr02	irgsp1_rep	mRNA	13096088	13098218	.	+	.	ID=Os02t0325600-01;Name=Os02t0325600-01;Locus_id=Os02g0325600;RAP-DB Gene Symbol Synonym(s)=NIGT1;RAP-DB Gene Name Synonym(s)=NITRATE-INDUCIBLE%2C GARP-TYPE TRANSCRIPTIONAL REPRESSOR 1%2C Nitrate-Inducible%2C GARP-type Transcriptional Repressor 1;CGSNL Gene Symbol=NIGT1;CGSNL Gene Name=NITRATE-INDUCIBLE%2C GARP-TYPE TRANSCRIPTIONAL REPRESSOR 1;Oryzabase Gene Name Synonym(s)="Nitrate-Inducible%2C GARP-type Transcriptional Repressor 1";Note=Nitrate-inducible and autorepressible transcriptional repressor%2C Nitrogen response;Transcript_evidence=AK101809;ORF_evidence=Q6Z869;GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: Chromatin binding (GO:0003682);InterPro=Homeodomain-like (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930),Myb domain%2C plants (IPR006447);NIAS_FLcDNA=J033066M05;Manual Curation=November 27%2C 2014;Literature_PMID=23324170;Oryzabase=20509;TENOR=Os02t0325600-01;KEGG=Os02t0325600-01
Chr02	irgsp1_rep	five_prime_UTR	13096088	13096352	.	+	.	Parent=Os02t0325600-01
Chr02	irgsp1_rep	CDS	13096353	13096488	.	+	0	Parent=Os02t0325600-01
Chr02	irgsp1_rep	CDS	13096575	13096894	.	+	2	Parent=Os02t0325600-01
Chr02	irgsp1_rep	CDS	13097006	13097327	.	+	0	Parent=Os02t0325600-01
Chr02	irgsp1_rep	CDS	13097460	13097536	.	+	2	Parent=Os02t0325600-01
Chr02	irgsp1_rep	CDS	13097648	13098031	.	+	0	Parent=Os02t0325600-01
Chr02	irgsp1_rep	three_prime_UTR	13098032	13098218	.	+	.	Parent=Os02t0325600-01
Chr02	irgsp1_rep	mRNA	13096207	13098218	.	+	.	ID=Os02t0325600-02;Name=Os02t0325600-02;Locus_id=Os02g0325600;CGSNL Gene Symbol=NIGT1;CGSNL Gene Name=NITRATE-INDUCIBLE%2C GARP-TYPE TRANSCRIPTIONAL REPRESSOR 1;Oryzabase Gene Name Synonym(s)="Nitrate-Inducible%2C GARP-type Transcriptional Repressor 1";Note=Similar to Phosphate starvation response regulator-like protein.;Transcript_evidence=AK064355 (DDBJ%2C Best hit);ORF_evidence=A3AJ08 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=002-108-B01;Oryzabase=20509;Expression=AK064355;TENOR=Os02t0325600-02;KEGG=Os02t0325600-02
Chr02	irgsp1_rep	five_prime_UTR	13096207	13096352	.	+	.	Parent=Os02t0325600-02
Chr02	irgsp1_rep	CDS	13096353	13096488	.	+	0	Parent=Os02t0325600-02
Chr02	irgsp1_rep	CDS	13096575	13096894	.	+	2	Parent=Os02t0325600-02
Chr02	irgsp1_rep	CDS	13097006	13097327	.	+	0	Parent=Os02t0325600-02
Chr02	irgsp1_rep	CDS	13097460	13097536	.	+	2	Parent=Os02t0325600-02
Chr02	irgsp1_rep	CDS	13097648	13098031	.	+	0	Parent=Os02t0325600-02
Chr02	irgsp1_rep	three_prime_UTR	13098032	13098218	.	+	.	Parent=Os02t0325600-02
Chr02	irgsp1_rep	mRNA	13096363	13097514	.	-	.	ID=Os02t0325800-00;Name=Os02t0325800-00;Locus_id=Os02g0325800;Note=Hypothetical protein.;Transcript_evidence=EU973944 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0325800-00
Chr02	irgsp1_rep	five_prime_UTR	13097467	13097514	.	-	.	Parent=Os02t0325800-00
Chr02	irgsp1_rep	five_prime_UTR	13097182	13097343	.	-	.	Parent=Os02t0325800-00
Chr02	irgsp1_rep	CDS	13097013	13097181	.	-	0	Parent=Os02t0325800-00
Chr02	irgsp1_rep	CDS	13096480	13096874	.	-	2	Parent=Os02t0325800-00
Chr02	irgsp1_rep	three_prime_UTR	13096363	13096479	.	-	.	Parent=Os02t0325800-00
Chr02	irgsp1_rep	mRNA	13120100	13127006	.	-	.	ID=Os02t0326000-01;Name=Os02t0326000-01;Locus_id=Os02g0326000;Note=Protein of unknown function DUF2232%2C membrane domain containing protein.;Transcript_evidence=AK059937 (DDBJ%2C Best hit);ORF_evidence=longestORF;InterPro=Protein of unknown function DUF2232%2C membrane (IPR018710);NIAS_FLcDNA=006-210-D11;Expression=AK059937;TENOR=Os02t0326000-01;KEGG=Os02t0326000-01
Chr02	irgsp1_rep	five_prime_UTR	13126767	13127006	.	-	.	Parent=Os02t0326000-01
Chr02	irgsp1_rep	CDS	13126443	13126766	.	-	0	Parent=Os02t0326000-01
Chr02	irgsp1_rep	CDS	13126213	13126293	.	-	0	Parent=Os02t0326000-01
Chr02	irgsp1_rep	CDS	13126057	13126116	.	-	0	Parent=Os02t0326000-01
Chr02	irgsp1_rep	CDS	13123363	13123406	.	-	0	Parent=Os02t0326000-01
Chr02	irgsp1_rep	CDS	13123141	13123183	.	-	1	Parent=Os02t0326000-01
Chr02	irgsp1_rep	CDS	13120577	13120648	.	-	0	Parent=Os02t0326000-01
Chr02	irgsp1_rep	CDS	13120397	13120498	.	-	0	Parent=Os02t0326000-01
Chr02	irgsp1_rep	CDS	13120204	13120323	.	-	0	Parent=Os02t0326000-01
Chr02	irgsp1_rep	three_prime_UTR	13120100	13120203	.	-	.	Parent=Os02t0326000-01
Chr02	irgsp1_rep	mRNA	13119924	13126978	.	-	.	ID=Os02t0326000-02;Name=Os02t0326000-02;Locus_id=Os02g0326000;Note=Similar to Membrane protein.;Transcript_evidence=AK102973 (DDBJ%2C Best hit);ORF_evidence=B6TDF9 (UniProt);InterPro=Protein of unknown function DUF2232%2C membrane (IPR018710);NIAS_FLcDNA=J033115K18;Expression=AK102973;TENOR=Os02t0326000-02;KEGG=Os02t0326000-02
Chr02	irgsp1_rep	five_prime_UTR	13126767	13126978	.	-	.	Parent=Os02t0326000-02
Chr02	irgsp1_rep	CDS	13126443	13126766	.	-	0	Parent=Os02t0326000-02
Chr02	irgsp1_rep	CDS	13126213	13126293	.	-	0	Parent=Os02t0326000-02
Chr02	irgsp1_rep	CDS	13126057	13126116	.	-	0	Parent=Os02t0326000-02
Chr02	irgsp1_rep	CDS	13123363	13123406	.	-	0	Parent=Os02t0326000-02
Chr02	irgsp1_rep	CDS	13123141	13123183	.	-	1	Parent=Os02t0326000-02
Chr02	irgsp1_rep	CDS	13120577	13120648	.	-	0	Parent=Os02t0326000-02
Chr02	irgsp1_rep	CDS	13120397	13120498	.	-	0	Parent=Os02t0326000-02
Chr02	irgsp1_rep	CDS	13120204	13120323	.	-	0	Parent=Os02t0326000-02
Chr02	irgsp1_rep	three_prime_UTR	13119924	13120203	.	-	.	Parent=Os02t0326000-02
Chr02	irgsp1_rep	mRNA	13122304	13127037	.	+	.	ID=Os02t0326100-01;Name=Os02t0326100-01;Locus_id=Os02g0326100;Note=Hypothetical gene.;Transcript_evidence=AK058709 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-019-D04;Expression=AK058709;TENOR=Os02t0326100-01;KEGG=Os02t0326100-01
Chr02	irgsp1_rep	five_prime_UTR	13122304	13122304	.	+	.	Parent=Os02t0326100-01
Chr02	irgsp1_rep	CDS	13122305	13122781	.	+	0	Parent=Os02t0326100-01
Chr02	irgsp1_rep	three_prime_UTR	13122782	13122793	.	+	.	Parent=Os02t0326100-01
Chr02	irgsp1_rep	three_prime_UTR	13126423	13127037	.	+	.	Parent=Os02t0326100-01
Chr02	irgsp1_rep	mRNA	13127080	13132370	.	+	.	ID=Os02t0326200-00;Name=Os02t0326200-00;Locus_id=Os02g0326200;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001046705.1 (RefSeq);TENOR=Os02t0326200-00;KEGG=Os02t0326200-00
Chr02	irgsp1_rep	CDS	13127080	13127548	.	+	0	Parent=Os02t0326200-00
Chr02	irgsp1_rep	CDS	13129570	13129771	.	+	2	Parent=Os02t0326200-00
Chr02	irgsp1_rep	CDS	13132199	13132370	.	+	1	Parent=Os02t0326200-00
Chr02	irgsp1_rep	mRNA	13137869	13141251	.	+	.	ID=Os02t0326500-01;Name=Os02t0326500-01;Locus_id=Os02g0326500;Note=Similar to targeting protein-related.;Transcript_evidence=AK064979 (DDBJ%2C Best hit);ORF_evidence=NP_973754.2 (RefSeq);InterPro=Cell cycle regulated microtubule associated protein (IPR022021);NIAS_FLcDNA=J013001C05;Expression=AK064979;TENOR=Os02t0326500-01;KEGG=Os02t0326500-01
Chr02	irgsp1_rep	five_prime_UTR	13137869	13137922	.	+	.	Parent=Os02t0326500-01
Chr02	irgsp1_rep	five_prime_UTR	13138023	13138471	.	+	.	Parent=Os02t0326500-01
Chr02	irgsp1_rep	five_prime_UTR	13139358	13139398	.	+	.	Parent=Os02t0326500-01
Chr02	irgsp1_rep	CDS	13139399	13139551	.	+	0	Parent=Os02t0326500-01
Chr02	irgsp1_rep	three_prime_UTR	13139552	13141251	.	+	.	Parent=Os02t0326500-01
Chr02	irgsp1_rep	mRNA	13146575	13149697	.	+	.	ID=Os02t0326600-01;Name=Os02t0326600-01;Locus_id=Os02g0326600;Oryzabase Gene Name Synonym(s)=CRL4-like;Note=Similar to Pattern formation protein EMB30.;Transcript_evidence=AK240747 (DDBJ%2C Best hit);ORF_evidence=Q8S566 (UniProt);GO=Biological Process: regulation of ARF protein signal transduction (GO:0032012),Cellular Component: intracellular (GO:0005622),Molecular Function: ARF guanyl-nucleotide exchange factor activity (GO:0005086);InterPro=SEC7-like (IPR000904),SEC7-like%2C alpha orthogonal bundle (IPR023394);NIAS_FLcDNA=J043039E11;Oryzabase=13562;TENOR=Os02t0326600-01;KEGG=Os02t0326600-01
Chr02	irgsp1_rep	five_prime_UTR	13146575	13146576	.	+	.	Parent=Os02t0326600-01
Chr02	irgsp1_rep	CDS	13146577	13149567	.	+	0	Parent=Os02t0326600-01
Chr02	irgsp1_rep	three_prime_UTR	13149568	13149697	.	+	.	Parent=Os02t0326600-01
Chr02	irgsp1_rep	mRNA	13156600	13163831	.	+	.	ID=Os02t0326700-01;Name=Os02t0326700-01;Locus_id=Os02g0326700;Oryzabase Gene Symbol Synonym(s)=OsRhmbd6%2C RHMBD6;Oryzabase Gene Name Synonym(s)=Rhomboid 6%2C RHOMBOID 6;Note=Peptidase S54%2C rhomboid domain containing protein.;Transcript_evidence=AK064977 (DDBJ%2C Best hit);ORF_evidence=B8AGM6 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Cellular Component: integral to membrane (GO:0016021),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S54%2C rhomboid (IPR002610),Peptidase S54%2C rhomboid domain (IPR022764);NIAS_FLcDNA=J013001C02;Oryzabase=20062;TENOR=Os02t0326700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	13156600	13156722	.	+	.	Parent=Os02t0326700-01
Chr02	irgsp1_rep	five_prime_UTR	13156792	13156915	.	+	.	Parent=Os02t0326700-01
Chr02	irgsp1_rep	CDS	13156916	13156929	.	+	0	Parent=Os02t0326700-01
Chr02	irgsp1_rep	CDS	13157436	13157953	.	+	1	Parent=Os02t0326700-01
Chr02	irgsp1_rep	CDS	13158058	13158172	.	+	2	Parent=Os02t0326700-01
Chr02	irgsp1_rep	CDS	13159829	13159994	.	+	1	Parent=Os02t0326700-01
Chr02	irgsp1_rep	CDS	13161183	13161353	.	+	0	Parent=Os02t0326700-01
Chr02	irgsp1_rep	CDS	13163505	13163585	.	+	0	Parent=Os02t0326700-01
Chr02	irgsp1_rep	three_prime_UTR	13163586	13163831	.	+	.	Parent=Os02t0326700-01
Chr02	irgsp1_rep	mRNA	13173784	13176182	.	+	.	ID=Os02t0327000-01;Name=Os02t0327000-01;Locus_id=Os02g0327000;Oryzabase Gene Symbol Synonym(s)=OsGAP1%2C GAP1;Oryzabase Gene Name Synonym(s)=GTPase-activating protein 1;Note=C2 domain containing protein.;Transcript_evidence=AK073631 (DDBJ%2C Best hit);ORF_evidence=B4FFK7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=J033052D22;Oryzabase=19660;Expression=AK073631;TENOR=Os02t0327000-01;KEGG=Os02t0327000-01
Chr02	irgsp1_rep	five_prime_UTR	13173784	13173977	.	+	.	Parent=Os02t0327000-01
Chr02	irgsp1_rep	CDS	13173978	13174091	.	+	0	Parent=Os02t0327000-01
Chr02	irgsp1_rep	CDS	13174399	13174494	.	+	0	Parent=Os02t0327000-01
Chr02	irgsp1_rep	CDS	13175528	13175815	.	+	0	Parent=Os02t0327000-01
Chr02	irgsp1_rep	three_prime_UTR	13175816	13176182	.	+	.	Parent=Os02t0327000-01
Chr02	irgsp1_rep	mRNA	13173870	13176175	.	+	.	ID=Os02t0327000-02;Name=Os02t0327000-02;Locus_id=Os02g0327000;Oryzabase Gene Symbol Synonym(s)=OsGAP1%2C GAP1;Oryzabase Gene Name Synonym(s)=GTPase-activating protein 1;Note=C2 domain containing protein.;Transcript_evidence=AK104165 (DDBJ%2C Best hit);ORF_evidence=B4FFK7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=006-212-C07;Oryzabase=19660;Expression=AK104165;TENOR=Os02t0327000-02;KEGG=Os02t0327000-02
Chr02	irgsp1_rep	five_prime_UTR	13173870	13173977	.	+	.	Parent=Os02t0327000-02
Chr02	irgsp1_rep	CDS	13173978	13174091	.	+	0	Parent=Os02t0327000-02
Chr02	irgsp1_rep	CDS	13174399	13174494	.	+	0	Parent=Os02t0327000-02
Chr02	irgsp1_rep	CDS	13175528	13175815	.	+	0	Parent=Os02t0327000-02
Chr02	irgsp1_rep	three_prime_UTR	13175816	13176175	.	+	.	Parent=Os02t0327000-02
Chr02	irgsp1_rep	mRNA	13179053	13184657	.	-	.	ID=Os02t0327100-01;Name=Os02t0327100-01;Locus_id=Os02g0327100;CGSNL Gene Symbol=TTN5;CGSNL Gene Name=TITIN 5;Oryzabase Gene Symbol Synonym(s)=OsTTN5%2C TTN5;Oryzabase Gene Name Synonym(s)=Titin 5;Note=Similar to ARL2 G-protein.;Transcript_evidence=AK073532 (DDBJ%2C Best hit);ORF_evidence=NP_001149177.1 (RefSeq);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: small GTPase mediated signal transduction (GO:0007264),Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C SAR1-type (IPR006687),Small GTPase superfamily%2C ARF/SAR type (IPR006689),Small GTPase superfamily%2C ARF type (IPR024156);NIAS_FLcDNA=J033046D12;Oryzabase=21015;Expression=AK073532;TENOR=Os02t0327100-01;KEGG=Os02t0327100-01
Chr02	irgsp1_rep	five_prime_UTR	13184001	13184657	.	-	.	Parent=Os02t0327100-01
Chr02	irgsp1_rep	five_prime_UTR	13183334	13183444	.	-	.	Parent=Os02t0327100-01
Chr02	irgsp1_rep	CDS	13183269	13183333	.	-	0	Parent=Os02t0327100-01
Chr02	irgsp1_rep	CDS	13183000	13183110	.	-	1	Parent=Os02t0327100-01
Chr02	irgsp1_rep	CDS	13181930	13182092	.	-	1	Parent=Os02t0327100-01
Chr02	irgsp1_rep	CDS	13181387	13181467	.	-	0	Parent=Os02t0327100-01
Chr02	irgsp1_rep	CDS	13179187	13179324	.	-	0	Parent=Os02t0327100-01
Chr02	irgsp1_rep	three_prime_UTR	13179053	13179186	.	-	.	Parent=Os02t0327100-01
Chr02	irgsp1_rep	mRNA	13200808	13203751	.	+	.	ID=Os02t0327500-01;Name=Os02t0327500-01;Locus_id=Os02g0327500;Note=Protein of unknown function DUF266%2C plant family protein.;Transcript_evidence=AK069802 (DDBJ%2C Best hit);ORF_evidence=B8AGM8 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: acetylglucosaminyltransferase activity (GO:0008375);InterPro=Glycosyl transferase%2C family 14 (IPR003406);NIAS_FLcDNA=J023026H02;Expression=AK069802;TENOR=Os02t0327500-01;KEGG=Os02t0327500-01
Chr02	irgsp1_rep	five_prime_UTR	13200808	13200996	.	+	.	Parent=Os02t0327500-01
Chr02	irgsp1_rep	CDS	13200997	13201665	.	+	0	Parent=Os02t0327500-01
Chr02	irgsp1_rep	CDS	13202870	13203520	.	+	0	Parent=Os02t0327500-01
Chr02	irgsp1_rep	three_prime_UTR	13203521	13203751	.	+	.	Parent=Os02t0327500-01
Chr02	irgsp1_rep	mRNA	13223250	13227352	.	-	.	ID=Os02t0327700-01;Name=Os02t0327700-01;Locus_id=Os02g0327700;Note=Glycosyltransferase AER61%2C uncharacterized domain containing protein.;Transcript_evidence=AK072325 (DDBJ%2C Best hit),AK068019 (DDBJ%2C Best hit);ORF_evidence=B9F5E3 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyltransferase AER61%2C uncharacterised (IPR007657);NIAS_FLcDNA=J023033M07,J013133B03;Oryzabase=15239;Expression=AK072325;TENOR=Os02t0327700-01;KEGG=Os02t0327700-01
Chr02	irgsp1_rep	five_prime_UTR	13227184	13227352	.	-	.	Parent=Os02t0327700-01
Chr02	irgsp1_rep	CDS	13227042	13227183	.	-	0	Parent=Os02t0327700-01
Chr02	irgsp1_rep	CDS	13226843	13226920	.	-	2	Parent=Os02t0327700-01
Chr02	irgsp1_rep	CDS	13226685	13226744	.	-	2	Parent=Os02t0327700-01
Chr02	irgsp1_rep	CDS	13226473	13226568	.	-	2	Parent=Os02t0327700-01
Chr02	irgsp1_rep	CDS	13226321	13226365	.	-	2	Parent=Os02t0327700-01
Chr02	irgsp1_rep	CDS	13226158	13226220	.	-	2	Parent=Os02t0327700-01
Chr02	irgsp1_rep	CDS	13223329	13224509	.	-	2	Parent=Os02t0327700-01
Chr02	irgsp1_rep	three_prime_UTR	13223250	13223328	.	-	.	Parent=Os02t0327700-01
Chr02	irgsp1_rep	mRNA	13223120	13224084	.	-	.	ID=Os02t0327700-03;Name=Os02t0327700-03;Locus_id=Os02g0327700;Note=Hypothetical conserved gene.;Transcript_evidence=AK059878 (DDBJ%2C Best hit);ORF_evidence=B9F5E3 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyltransferase AER61%2C uncharacterised (IPR007657);NIAS_FLcDNA=006-207-G06;Oryzabase=15239;Expression=AK059878;TENOR=Os02t0327700-03;KEGG=Os02t0327700-03
Chr02	irgsp1_rep	CDS	13223329	13224084	.	-	0	Parent=Os02t0327700-03
Chr02	irgsp1_rep	three_prime_UTR	13223120	13223328	.	-	.	Parent=Os02t0327700-03
Chr02	irgsp1_rep	mRNA	13280881	13292533	.	+	.	ID=Os02t0328300-01;Name=Os02t0328300-01;Locus_id=Os02g0328300;RAP-DB Gene Symbol Synonym(s)=OsPKIWI%2C PKIWI502;CGSNL Gene Symbol=PKIWI;Oryzabase Gene Symbol Synonym(s)=OsPKIWI%2C PKIWI502;Note=Homolog of the Arabidopsis FNRL protein%2C Fruit protein;Transcript_evidence=AK068505;ORF_evidence=Q6Z6B5;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Riboflavin synthase-like beta-barrel (IPR017938),Ferredoxin-NADP reductase (FNR)%2C nucleotide-binding domain (IPR039261),FAD-binding domain%2C ferredoxin reductase-type (IPR017927),Oxidoreductase FAD/NAD(P)-binding (IPR001433);NIAS_FLcDNA=J013154E10;Manual Curation=August 15%2C 2019;Literature_PMID=30456598;Oryzabase=22841;Expression=AK068505;TENOR=Os02t0328300-01;KEGG=Os02t0328300-01
Chr02	irgsp1_rep	five_prime_UTR	13280881	13280946	.	+	.	Parent=Os02t0328300-01
Chr02	irgsp1_rep	CDS	13280947	13281470	.	+	0	Parent=Os02t0328300-01
Chr02	irgsp1_rep	CDS	13285392	13285491	.	+	1	Parent=Os02t0328300-01
Chr02	irgsp1_rep	CDS	13285566	13285661	.	+	0	Parent=Os02t0328300-01
Chr02	irgsp1_rep	CDS	13285751	13285829	.	+	0	Parent=Os02t0328300-01
Chr02	irgsp1_rep	CDS	13292107	13292171	.	+	2	Parent=Os02t0328300-01
Chr02	irgsp1_rep	three_prime_UTR	13292172	13292533	.	+	.	Parent=Os02t0328300-01
Chr02	irgsp1_rep	mRNA	13280919	13292417	.	+	.	ID=Os02t0328300-02;Name=Os02t0328300-02;Locus_id=Os02g0328300;CGSNL Gene Symbol=PKIWI;Oryzabase Gene Symbol Synonym(s)=OsPKIWI%2C PKIWI502;Note=Phenol hydroxylase reductase family protein.;Transcript_evidence=AK104780 (DDBJ%2C Best hit),AK109330 (DDBJ%2C Best hit);ORF_evidence=B4FRC8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Phenol hydroxylase reductase (IPR001221),Oxidoreductase FAD/NAD(P)-binding (IPR001433),Ferredoxin reductase-type FAD-binding domain (IPR017927),Riboflavin synthase-like beta-barrel (IPR017938);NIAS_FLcDNA=001-039-C06,006-201-C10;Oryzabase=22841;Expression=AK104780;TENOR=Os02t0328300-02;KEGG=Os02t0328300-02
Chr02	irgsp1_rep	five_prime_UTR	13280919	13280946	.	+	.	Parent=Os02t0328300-02
Chr02	irgsp1_rep	CDS	13280947	13281470	.	+	0	Parent=Os02t0328300-02
Chr02	irgsp1_rep	CDS	13285392	13285491	.	+	1	Parent=Os02t0328300-02
Chr02	irgsp1_rep	CDS	13285566	13285661	.	+	0	Parent=Os02t0328300-02
Chr02	irgsp1_rep	CDS	13285751	13285829	.	+	0	Parent=Os02t0328300-02
Chr02	irgsp1_rep	CDS	13292107	13292171	.	+	2	Parent=Os02t0328300-02
Chr02	irgsp1_rep	three_prime_UTR	13292172	13292417	.	+	.	Parent=Os02t0328300-02
Chr02	irgsp1_rep	mRNA	13293118	13294621	.	-	.	ID=Os02t0328500-00;Name=Os02t0328500-00;Locus_id=Os02g0328500;Note=Myb/SANT-like domain domain containing protein.;Transcript_evidence=BT037767 (DDBJ);ORF_evidence=Q6Z6B4 (UniProt);InterPro=Myb/SANT-like domain (IPR024752);TENOR=Os02t0328500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	13294268	13294621	.	-	0	Parent=Os02t0328500-00
Chr02	irgsp1_rep	CDS	13293733	13293945	.	-	0	Parent=Os02t0328500-00
Chr02	irgsp1_rep	CDS	13293597	13293668	.	-	0	Parent=Os02t0328500-00
Chr02	irgsp1_rep	three_prime_UTR	13293118	13293596	.	-	.	Parent=Os02t0328500-00
Chr02	irgsp1_rep	mRNA	13294319	13295534	.	+	.	ID=Os02t0328525-00;Name=Os02t0328525-00;Locus_id=Os02g0328525;Note=Hypothetical protein.;Transcript_evidence=BT019283 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0328525-00
Chr02	irgsp1_rep	five_prime_UTR	13294319	13294400	.	+	.	Parent=Os02t0328525-00
Chr02	irgsp1_rep	CDS	13294401	13294639	.	+	0	Parent=Os02t0328525-00
Chr02	irgsp1_rep	CDS	13294746	13294755	.	+	1	Parent=Os02t0328525-00
Chr02	irgsp1_rep	three_prime_UTR	13294756	13294855	.	+	.	Parent=Os02t0328525-00
Chr02	irgsp1_rep	three_prime_UTR	13294934	13295199	.	+	.	Parent=Os02t0328525-00
Chr02	irgsp1_rep	three_prime_UTR	13295443	13295534	.	+	.	Parent=Os02t0328525-00
Chr02	irgsp1_rep	mRNA	13301504	13302143	.	-	.	ID=Os02t0328550-00;Name=Os02t0328550-00;Locus_id=Os02g0328550;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6Z6B3 (UniProt);TENOR=Os02t0328550-00;KEGG=Os02t0328550-00
Chr02	irgsp1_rep	CDS	13302040	13302143	.	-	0	Parent=Os02t0328550-00
Chr02	irgsp1_rep	CDS	13301504	13301900	.	-	1	Parent=Os02t0328550-00
Chr02	irgsp1_rep	mRNA	13312123	13315987	.	+	.	ID=Os02t0328600-01;Name=Os02t0328600-01;Locus_id=Os02g0328600;Note=Conserved hypothetical protein.;Transcript_evidence=AK103347 (DDBJ%2C Best hit);ORF_evidence=B8AGN3 (UniProt);NIAS_FLcDNA=J033126D19;TENOR=Os02t0328600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	13312123	13312439	.	+	0	Parent=Os02t0328600-01
Chr02	irgsp1_rep	CDS	13312530	13312536	.	+	1	Parent=Os02t0328600-01
Chr02	irgsp1_rep	three_prime_UTR	13312537	13312612	.	+	.	Parent=Os02t0328600-01
Chr02	irgsp1_rep	three_prime_UTR	13312779	13312816	.	+	.	Parent=Os02t0328600-01
Chr02	irgsp1_rep	three_prime_UTR	13312927	13313010	.	+	.	Parent=Os02t0328600-01
Chr02	irgsp1_rep	three_prime_UTR	13313103	13313175	.	+	.	Parent=Os02t0328600-01
Chr02	irgsp1_rep	three_prime_UTR	13313623	13313733	.	+	.	Parent=Os02t0328600-01
Chr02	irgsp1_rep	three_prime_UTR	13314480	13314544	.	+	.	Parent=Os02t0328600-01
Chr02	irgsp1_rep	three_prime_UTR	13314628	13314938	.	+	.	Parent=Os02t0328600-01
Chr02	irgsp1_rep	three_prime_UTR	13315085	13315166	.	+	.	Parent=Os02t0328600-01
Chr02	irgsp1_rep	three_prime_UTR	13315257	13315424	.	+	.	Parent=Os02t0328600-01
Chr02	irgsp1_rep	three_prime_UTR	13315495	13315987	.	+	.	Parent=Os02t0328600-01
Chr02	irgsp1_rep	mRNA	13349865	13360544	.	+	.	ID=Os02t0329300-01;Name=Os02t0329300-01;Locus_id=Os02g0329300;Note=Conserved hypothetical protein.;Transcript_evidence=AK100291 (DDBJ%2C Best hit);ORF_evidence=B8AGN4 (UniProt);NIAS_FLcDNA=J023075K17;Expression=AK100291;TENOR=Os02t0329300-01;KEGG=Os02t0329300-01
Chr02	irgsp1_rep	five_prime_UTR	13349865	13350322	.	+	.	Parent=Os02t0329300-01
Chr02	irgsp1_rep	CDS	13350323	13350539	.	+	0	Parent=Os02t0329300-01
Chr02	irgsp1_rep	CDS	13350632	13350690	.	+	2	Parent=Os02t0329300-01
Chr02	irgsp1_rep	CDS	13350784	13350878	.	+	0	Parent=Os02t0329300-01
Chr02	irgsp1_rep	CDS	13352773	13352921	.	+	1	Parent=Os02t0329300-01
Chr02	irgsp1_rep	CDS	13353740	13353867	.	+	2	Parent=Os02t0329300-01
Chr02	irgsp1_rep	CDS	13353949	13354108	.	+	0	Parent=Os02t0329300-01
Chr02	irgsp1_rep	CDS	13355260	13355320	.	+	2	Parent=Os02t0329300-01
Chr02	irgsp1_rep	CDS	13355406	13355676	.	+	1	Parent=Os02t0329300-01
Chr02	irgsp1_rep	CDS	13356975	13357100	.	+	0	Parent=Os02t0329300-01
Chr02	irgsp1_rep	CDS	13357980	13358135	.	+	0	Parent=Os02t0329300-01
Chr02	irgsp1_rep	CDS	13358719	13358962	.	+	0	Parent=Os02t0329300-01
Chr02	irgsp1_rep	CDS	13359085	13359531	.	+	2	Parent=Os02t0329300-01
Chr02	irgsp1_rep	CDS	13360149	13360189	.	+	2	Parent=Os02t0329300-01
Chr02	irgsp1_rep	three_prime_UTR	13360190	13360544	.	+	.	Parent=Os02t0329300-01
Chr02	irgsp1_rep	mRNA	13350191	13360454	.	-	.	ID=Os02t0329450-00;Name=Os02t0329450-00;Locus_id=Os02g0329450;Note=Hypothetical protein.;Transcript_evidence=tplb0045a04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0329450-00
Chr02	irgsp1_rep	five_prime_UTR	13360165	13360454	.	-	.	Parent=Os02t0329450-00
Chr02	irgsp1_rep	five_prime_UTR	13359084	13359546	.	-	.	Parent=Os02t0329450-00
Chr02	irgsp1_rep	five_prime_UTR	13358719	13358949	.	-	.	Parent=Os02t0329450-00
Chr02	irgsp1_rep	five_prime_UTR	13357978	13358135	.	-	.	Parent=Os02t0329450-00
Chr02	irgsp1_rep	five_prime_UTR	13356964	13357098	.	-	.	Parent=Os02t0329450-00
Chr02	irgsp1_rep	five_prime_UTR	13355403	13355665	.	-	.	Parent=Os02t0329450-00
Chr02	irgsp1_rep	five_prime_UTR	13355266	13355317	.	-	.	Parent=Os02t0329450-00
Chr02	irgsp1_rep	five_prime_UTR	13353959	13354113	.	-	.	Parent=Os02t0329450-00
Chr02	irgsp1_rep	five_prime_UTR	13353740	13353878	.	-	.	Parent=Os02t0329450-00
Chr02	irgsp1_rep	five_prime_UTR	13352758	13352918	.	-	.	Parent=Os02t0329450-00
Chr02	irgsp1_rep	five_prime_UTR	13350769	13350863	.	-	.	Parent=Os02t0329450-00
Chr02	irgsp1_rep	CDS	13350761	13350768	.	-	0	Parent=Os02t0329450-00
Chr02	irgsp1_rep	CDS	13350245	13350569	.	-	1	Parent=Os02t0329450-00
Chr02	irgsp1_rep	three_prime_UTR	13350191	13350244	.	-	.	Parent=Os02t0329450-00
Chr02	irgsp1_rep	mRNA	13361034	13364227	.	-	.	ID=Os02t0329600-01;Name=Os02t0329600-01;Locus_id=Os02g0329600;Note=Conserved hypothetical protein.;Transcript_evidence=AK073295 (DDBJ%2C Best hit);ORF_evidence=Q6Z7I4 (UniProt);NIAS_FLcDNA=J033024G10;TENOR=Os02t0329600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	13363572	13364227	.	-	.	Parent=Os02t0329600-01
Chr02	irgsp1_rep	CDS	13363536	13363571	.	-	0	Parent=Os02t0329600-01
Chr02	irgsp1_rep	CDS	13363232	13363352	.	-	0	Parent=Os02t0329600-01
Chr02	irgsp1_rep	CDS	13363078	13363136	.	-	2	Parent=Os02t0329600-01
Chr02	irgsp1_rep	three_prime_UTR	13362984	13363077	.	-	.	Parent=Os02t0329600-01
Chr02	irgsp1_rep	three_prime_UTR	13362741	13362892	.	-	.	Parent=Os02t0329600-01
Chr02	irgsp1_rep	three_prime_UTR	13361497	13361597	.	-	.	Parent=Os02t0329600-01
Chr02	irgsp1_rep	three_prime_UTR	13361034	13361280	.	-	.	Parent=Os02t0329600-01
Chr02	irgsp1_rep	mRNA	13361085	13364083	.	-	.	ID=Os02t0329600-02;Name=Os02t0329600-02;Locus_id=Os02g0329600;Note=Conserved hypothetical protein.;Transcript_evidence=AK060473 (DDBJ%2C Best hit);ORF_evidence=B8AVQ6 (UniProt);NIAS_FLcDNA=001-012-E10;TENOR=Os02t0329600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	13363536	13364083	.	-	.	Parent=Os02t0329600-02
Chr02	irgsp1_rep	five_prime_UTR	13363232	13363314	.	-	.	Parent=Os02t0329600-02
Chr02	irgsp1_rep	five_prime_UTR	13363086	13363136	.	-	.	Parent=Os02t0329600-02
Chr02	irgsp1_rep	five_prime_UTR	13362741	13362892	.	-	.	Parent=Os02t0329600-02
Chr02	irgsp1_rep	five_prime_UTR	13361836	13361839	.	-	.	Parent=Os02t0329600-02
Chr02	irgsp1_rep	CDS	13361800	13361835	.	-	0	Parent=Os02t0329600-02
Chr02	irgsp1_rep	CDS	13361497	13361597	.	-	0	Parent=Os02t0329600-02
Chr02	irgsp1_rep	CDS	13361193	13361280	.	-	1	Parent=Os02t0329600-02
Chr02	irgsp1_rep	three_prime_UTR	13361085	13361192	.	-	.	Parent=Os02t0329600-02
Chr02	irgsp1_rep	mRNA	13367971	13370420	.	+	.	ID=Os02t0329800-01;Name=Os02t0329800-01;Locus_id=Os02g0329800;RAP-DB Gene Symbol Synonym(s)=XAX1%2C OsXAX1;RAP-DB Gene Name Synonym(s)=xylosyl arabinosyl substitution of xylan 1;Oryzabase Gene Symbol Synonym(s)=XAX1%2C OsXAX1;Oryzabase Gene Name Synonym(s)=xylosyl arabinosyl substitution of xylan 1;Note=Glycosyltransferase%2C Xylan biosynthesis;Transcript_evidence=AK070014;ORF_evidence=Q6Z7I3;GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyltransferase 61 (IPR007657);NIAS_FLcDNA=J023038E13;Manual Curation=February 15%2C 2017;Literature_PMID=23027943;Oryzabase=11596;Expression=AK070014;TENOR=Os02t0329800-01;KEGG=Os02t0329800-01;Subcellular location=Golgi apparatus (GO:0005794)
Chr02	irgsp1_rep	five_prime_UTR	13367971	13368060	.	+	.	Parent=Os02t0329800-01
Chr02	irgsp1_rep	CDS	13368061	13368268	.	+	0	Parent=Os02t0329800-01
Chr02	irgsp1_rep	CDS	13368396	13368677	.	+	2	Parent=Os02t0329800-01
Chr02	irgsp1_rep	CDS	13368889	13370099	.	+	2	Parent=Os02t0329800-01
Chr02	irgsp1_rep	three_prime_UTR	13370100	13370420	.	+	.	Parent=Os02t0329800-01
Chr02	irgsp1_rep	mRNA	13406565	13407091	.	+	.	ID=Os02t0329933-00;Name=Os02t0329933-00;Locus_id=Os02g0329933;Note=Similar to UDP-glycosyltransferase UGT99C4.;Transcript_evidence=EU968477 (DDBJ);ORF_evidence=C4MF42 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os02t0329933-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	13406565	13407074	.	+	0	Parent=Os02t0329933-00
Chr02	irgsp1_rep	three_prime_UTR	13407075	13407091	.	+	.	Parent=Os02t0329933-00
Chr02	irgsp1_rep	mRNA	13417229	13420076	.	+	.	ID=Os02t0330200-01;Name=Os02t0330200-01;Locus_id=Os02g0330200;CGSNL Gene Symbol=XAT2;CGSNL Gene Name=XYLAN ARABINOSYLTRANSFERASE 2;Oryzabase Gene Symbol Synonym(s)=OsXAT2;Oryzabase Gene Name Synonym(s)=xylan arabinosyltransferase2;Note=Glycosyltransferase AER61%2C uncharacterized domain containing protein.;Transcript_evidence=AK103888 (DDBJ%2C Best hit);ORF_evidence=Q5QPZ3 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyltransferase AER61%2C uncharacterised (IPR007657);NIAS_FLcDNA=J033150D01;Oryzabase=10257;Expression=AK103888;TENOR=Os02t0330200-01;KEGG=Os02t0330200-01
Chr02	irgsp1_rep	five_prime_UTR	13417229	13417384	.	+	.	Parent=Os02t0330200-01
Chr02	irgsp1_rep	CDS	13417385	13417529	.	+	0	Parent=Os02t0330200-01
Chr02	irgsp1_rep	CDS	13417638	13417793	.	+	2	Parent=Os02t0330200-01
Chr02	irgsp1_rep	CDS	13417883	13417969	.	+	2	Parent=Os02t0330200-01
Chr02	irgsp1_rep	CDS	13418124	13418255	.	+	2	Parent=Os02t0330200-01
Chr02	irgsp1_rep	CDS	13418378	13418443	.	+	2	Parent=Os02t0330200-01
Chr02	irgsp1_rep	CDS	13418658	13419823	.	+	2	Parent=Os02t0330200-01
Chr02	irgsp1_rep	three_prime_UTR	13419824	13420076	.	+	.	Parent=Os02t0330200-01
Chr02	irgsp1_rep	mRNA	13417273	13419832	.	-	.	ID=Os02t0330400-00;Name=Os02t0330400-00;Locus_id=Os02g0330400;Note=Hypothetical protein.;Transcript_evidence=tplb0061g13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0330400-00
Chr02	irgsp1_rep	five_prime_UTR	13418599	13419832	.	-	.	Parent=Os02t0330400-00
Chr02	irgsp1_rep	five_prime_UTR	13418171	13418265	.	-	.	Parent=Os02t0330400-00
Chr02	irgsp1_rep	five_prime_UTR	13417664	13417908	.	-	.	Parent=Os02t0330400-00
Chr02	irgsp1_rep	CDS	13417638	13417663	.	-	0	Parent=Os02t0330400-00
Chr02	irgsp1_rep	CDS	13417273	13417529	.	-	1	Parent=Os02t0330400-00
Chr02	irgsp1_rep	mRNA	13471165	13471402	.	-	.	ID=Os02t0330601-01;Name=Os02t0330601-01;Locus_id=Os02g0330601;Note=Non-protein coding transcript.;Transcript_evidence=AK287949 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J075030E02;TENOR=Os02t0330601-01
Chr02	irgsp1_rep	exon	13471165	13471402	.	-	.	Parent=Os02t0330601-01
Chr02	irgsp1_rep	mRNA	13495411	13498068	.	+	.	ID=Os02t0331200-01;Name=Os02t0331200-01;Locus_id=Os02g0331200;Note=Glycosyltransferase AER61%2C uncharacterized domain containing protein.;Transcript_evidence=AK103231 (DDBJ%2C Best hit),AK100151 (DDBJ%2C Best hit);ORF_evidence=Q5QPY3 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyltransferase AER61%2C uncharacterised (IPR007657);NIAS_FLcDNA=J033123E06,J023015H06;Oryzabase=15241;Expression=AK103231;TENOR=Os02t0331200-01;KEGG=Os02t0331200-01
Chr02	irgsp1_rep	five_prime_UTR	13495411	13495697	.	+	.	Parent=Os02t0331200-01
Chr02	irgsp1_rep	CDS	13495698	13495821	.	+	0	Parent=Os02t0331200-01
Chr02	irgsp1_rep	CDS	13495981	13496085	.	+	2	Parent=Os02t0331200-01
Chr02	irgsp1_rep	CDS	13496486	13497771	.	+	2	Parent=Os02t0331200-01
Chr02	irgsp1_rep	three_prime_UTR	13497772	13498068	.	+	.	Parent=Os02t0331200-01
Chr02	irgsp1_rep	mRNA	13495654	13498320	.	+	.	ID=Os02t0331200-02;Name=Os02t0331200-02;Locus_id=Os02g0331200;Note=Similar to glycosyltransferase.;Transcript_evidence=AK063938 (DDBJ%2C Best hit);ORF_evidence=Q5QPY3 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyltransferase AER61%2C uncharacterised (IPR007657);NIAS_FLcDNA=001-123-D12;Oryzabase=15241;Expression=AK063938;TENOR=Os02t0331200-02;KEGG=Os02t0331200-02
Chr02	irgsp1_rep	five_prime_UTR	13495654	13495697	.	+	.	Parent=Os02t0331200-02
Chr02	irgsp1_rep	CDS	13495698	13495821	.	+	0	Parent=Os02t0331200-02
Chr02	irgsp1_rep	CDS	13495981	13496085	.	+	2	Parent=Os02t0331200-02
Chr02	irgsp1_rep	CDS	13496489	13497771	.	+	2	Parent=Os02t0331200-02
Chr02	irgsp1_rep	three_prime_UTR	13497772	13498320	.	+	.	Parent=Os02t0331200-02
Chr02	irgsp1_rep	mRNA	13505264	13507442	.	-	.	ID=Os02t0331400-00;Name=Os02t0331400-00;Locus_id=Os02g0331400;Note=Similar to nodulin-like protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001149629.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);TENOR=Os02t0331400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	13507252	13507442	.	-	0	Parent=Os02t0331400-00
Chr02	irgsp1_rep	CDS	13506965	13507027	.	-	1	Parent=Os02t0331400-00
Chr02	irgsp1_rep	CDS	13506767	13506883	.	-	1	Parent=Os02t0331400-00
Chr02	irgsp1_rep	CDS	13506316	13506475	.	-	1	Parent=Os02t0331400-00
Chr02	irgsp1_rep	CDS	13505934	13506092	.	-	0	Parent=Os02t0331400-00
Chr02	irgsp1_rep	CDS	13505586	13505737	.	-	0	Parent=Os02t0331400-00
Chr02	irgsp1_rep	CDS	13505264	13505420	.	-	1	Parent=Os02t0331400-00
Chr02	irgsp1_rep	mRNA	13560755	13565938	.	-	.	ID=Os02t0332200-01;Name=Os02t0332200-01;Locus_id=Os02g0332200;Note=Similar to T-complex protein 1 delta subunit.;Transcript_evidence=AK067672 (DDBJ%2C Best hit);ORF_evidence=A2YUU5 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: cellular protein metabolic process (GO:0044267),Molecular Function: ATP binding (GO:0005524),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Chaperonin TCP-1%2C conserved site (IPR002194),Chaperonin Cpn60/TCP-1 (IPR002423),T-complex protein 1%2C delta subunit (IPR012717),Chaperone%2C tailless complex polypeptide 1 (IPR017998);NIAS_FLcDNA=J013119K24;Expression=AK067672;TENOR=Os02t0332200-01;KEGG=Os02t0332200-01
Chr02	irgsp1_rep	five_prime_UTR	13565854	13565938	.	-	.	Parent=Os02t0332200-01
Chr02	irgsp1_rep	CDS	13564631	13565853	.	-	0	Parent=Os02t0332200-01
Chr02	irgsp1_rep	CDS	13561145	13561526	.	-	1	Parent=Os02t0332200-01
Chr02	irgsp1_rep	three_prime_UTR	13560755	13561144	.	-	.	Parent=Os02t0332200-01
Chr02	irgsp1_rep	mRNA	13560894	13564833	.	-	.	ID=Os02t0332200-02;Name=Os02t0332200-02;Locus_id=Os02g0332200;Note=Similar to T-complex protein 1%2C delta subunit.;Transcript_evidence=AK059413 (DDBJ%2C Best hit);ORF_evidence=A2YUU5 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: cellular protein metabolic process (GO:0044267),Molecular Function: ATP binding (GO:0005524),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Chaperonin Cpn60/TCP-1 (IPR002423),T-complex protein 1%2C delta subunit (IPR012717),Chaperone%2C tailless complex polypeptide 1 (IPR017998);NIAS_FLcDNA=001-027-D02;Expression=AK059413;TENOR=Os02t0332200-02;KEGG=Os02t0332200-02
Chr02	irgsp1_rep	CDS	13564631	13564833	.	-	0	Parent=Os02t0332200-02
Chr02	irgsp1_rep	CDS	13561145	13561526	.	-	1	Parent=Os02t0332200-02
Chr02	irgsp1_rep	three_prime_UTR	13560894	13561144	.	-	.	Parent=Os02t0332200-02
Chr02	irgsp1_rep	mRNA	13568044	13570902	.	+	.	ID=Os02t0332450-00;Name=Os02t0332450-00;Locus_id=Os02g0332450;Note=Hypothetical conserved gene.;Transcript_evidence=AK240743 (DDBJ%2C Secondary hit);ORF_evidence=NP_001172631.1 (RefSeq);TENOR=Os02t0332450-00;KEGG=Os02t0332450-00
Chr02	irgsp1_rep	five_prime_UTR	13568044	13570252	.	+	.	Parent=Os02t0332450-00
Chr02	irgsp1_rep	CDS	13570253	13570378	.	+	0	Parent=Os02t0332450-00
Chr02	irgsp1_rep	three_prime_UTR	13570379	13570798	.	+	.	Parent=Os02t0332450-00
Chr02	irgsp1_rep	three_prime_UTR	13570809	13570902	.	+	.	Parent=Os02t0332450-00
Chr02	irgsp1_rep	mRNA	13605066	13606083	.	-	.	ID=Os02t0332700-01;Name=Os02t0332700-01;Locus_id=Os02g0332700;Note=Conserved hypothetical protein.;Transcript_evidence=AK062975 (DDBJ%2C Best hit);ORF_evidence=Q84YY9 (UniProt);NIAS_FLcDNA=001-109-E09;Expression=AK062975;TENOR=Os02t0332700-01;KEGG=Os02t0332700-01
Chr02	irgsp1_rep	five_prime_UTR	13606011	13606083	.	-	.	Parent=Os02t0332700-01
Chr02	irgsp1_rep	CDS	13605699	13606010	.	-	0	Parent=Os02t0332700-01
Chr02	irgsp1_rep	three_prime_UTR	13605066	13605698	.	-	.	Parent=Os02t0332700-01
Chr02	irgsp1_rep	mRNA	13606095	13609389	.	+	.	ID=Os02t0332800-01;Name=Os02t0332800-01;Locus_id=Os02g0332800;Note=Hypothetical gene.;Transcript_evidence=AK287807 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065178H22;TENOR=Os02t0332800-01;KEGG=Os02t0332800-01
Chr02	irgsp1_rep	five_prime_UTR	13606095	13606096	.	+	.	Parent=Os02t0332800-01
Chr02	irgsp1_rep	CDS	13606097	13607251	.	+	0	Parent=Os02t0332800-01
Chr02	irgsp1_rep	three_prime_UTR	13607252	13609389	.	+	.	Parent=Os02t0332800-01
Chr02	irgsp1_rep	mRNA	13606775	13607499	.	+	.	ID=Os02t0332800-02;Name=Os02t0332800-02;Locus_id=Os02g0332800;Note=Conserved hypothetical protein.;Transcript_evidence=AK111126 (DDBJ%2C Best hit);ORF_evidence=Q7XIT9 (UniProt);NIAS_FLcDNA=002-176-C07;TENOR=Os02t0332800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	13606775	13606776	.	+	.	Parent=Os02t0332800-02
Chr02	irgsp1_rep	CDS	13606777	13607235	.	+	0	Parent=Os02t0332800-02
Chr02	irgsp1_rep	three_prime_UTR	13607236	13607499	.	+	.	Parent=Os02t0332800-02
Chr02	irgsp1_rep	mRNA	13759250	13767143	.	+	.	ID=Os02t0433600-01;Name=Os02t0433600-01;Locus_id=Os02g0433600;Oryzabase Gene Symbol Synonym(s)=OsbHLH064;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 064;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=AK069790 (DDBJ%2C Best hit),AK103986 (DDBJ%2C Best hit);ORF_evidence=B6UE48 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J023031O20,001-017-H10;Oryzabase=15352;TENOR=Os02t0433600-01
Chr02	irgsp1_rep	five_prime_UTR	13759250	13759326	.	+	.	Parent=Os02t0433600-01
Chr02	irgsp1_rep	CDS	13759327	13759403	.	+	0	Parent=Os02t0433600-01
Chr02	irgsp1_rep	CDS	13759876	13759997	.	+	1	Parent=Os02t0433600-01
Chr02	irgsp1_rep	CDS	13765569	13765696	.	+	2	Parent=Os02t0433600-01
Chr02	irgsp1_rep	CDS	13765789	13766316	.	+	0	Parent=Os02t0433600-01
Chr02	irgsp1_rep	CDS	13766433	13766609	.	+	0	Parent=Os02t0433600-01
Chr02	irgsp1_rep	three_prime_UTR	13766610	13767143	.	+	.	Parent=Os02t0433600-01
Chr02	irgsp1_rep	mRNA	13772039	13773406	.	-	.	ID=Os02t0433900-01;Name=Os02t0433900-01;Locus_id=Os02g0433900;Note=Conserved hypothetical protein.;Transcript_evidence=AK070822 (DDBJ%2C Best hit);ORF_evidence=NP_001176872.1 (RefSeq);NIAS_FLcDNA=J023068D24;TENOR=Os02t0433900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	13772594	13773406	.	-	.	Parent=Os02t0433900-01
Chr02	irgsp1_rep	CDS	13772321	13772593	.	-	0	Parent=Os02t0433900-01
Chr02	irgsp1_rep	three_prime_UTR	13772039	13772320	.	-	.	Parent=Os02t0433900-01
Chr02	irgsp1_rep	mRNA	13840629	13848104	.	-	.	ID=Os02t0435000-01;Name=Os02t0435000-01;Locus_id=Os02g0435000;CGSNL Gene Symbol=NSCC2;CGSNL Gene Name=NONSELECTIVE CATION CHANNEL 2;Oryzabase Gene Symbol Synonym(s)=OsNSCC2;Oryzabase Gene Name Synonym(s)=Nonselective Cation Channel 2;Note=Translocation protein Sec62 family protein.;Transcript_evidence=AK102414 (DDBJ%2C Best hit);ORF_evidence=B6UFL6 (UniProt);GO=Biological Process: protein transport (GO:0015031),Cellular Component: integral to membrane (GO:0016021),Molecular Function: protein transporter activity (GO:0008565);InterPro=Translocation protein Sec62 (IPR004728);NIAS_FLcDNA=J033093B11;Oryzabase=21530;Expression=AK102414;TENOR=Os02t0435000-01;KEGG=Os02t0435000-01
Chr02	irgsp1_rep	five_prime_UTR	13847638	13848104	.	-	.	Parent=Os02t0435000-01
Chr02	irgsp1_rep	CDS	13847539	13847637	.	-	0	Parent=Os02t0435000-01
Chr02	irgsp1_rep	CDS	13846179	13846496	.	-	0	Parent=Os02t0435000-01
Chr02	irgsp1_rep	CDS	13845493	13845694	.	-	0	Parent=Os02t0435000-01
Chr02	irgsp1_rep	CDS	13842499	13842727	.	-	2	Parent=Os02t0435000-01
Chr02	irgsp1_rep	CDS	13840801	13841071	.	-	1	Parent=Os02t0435000-01
Chr02	irgsp1_rep	three_prime_UTR	13840629	13840800	.	-	.	Parent=Os02t0435000-01
Chr02	irgsp1_rep	mRNA	13840701	13847944	.	-	.	ID=Os02t0435000-02;Name=Os02t0435000-02;Locus_id=Os02g0435000;CGSNL Gene Symbol=NSCC2;CGSNL Gene Name=NONSELECTIVE CATION CHANNEL 2;Oryzabase Gene Symbol Synonym(s)=OsNSCC2;Oryzabase Gene Name Synonym(s)=Nonselective Cation Channel 2;Note=Translocation protein Sec62 family protein.;Transcript_evidence=AK060832 (DDBJ%2C Best hit);ORF_evidence=B6UFL6 (UniProt);GO=Biological Process: protein transport (GO:0015031),Cellular Component: integral to membrane (GO:0016021),Molecular Function: protein transporter activity (GO:0008565);InterPro=Translocation protein Sec62 (IPR004728);NIAS_FLcDNA=001-034-C06;Oryzabase=21530;Expression=AK060832;TENOR=Os02t0435000-02;KEGG=Os02t0435000-02
Chr02	irgsp1_rep	five_prime_UTR	13847638	13847944	.	-	.	Parent=Os02t0435000-02
Chr02	irgsp1_rep	CDS	13847539	13847637	.	-	0	Parent=Os02t0435000-02
Chr02	irgsp1_rep	CDS	13846179	13846496	.	-	0	Parent=Os02t0435000-02
Chr02	irgsp1_rep	CDS	13845493	13845694	.	-	0	Parent=Os02t0435000-02
Chr02	irgsp1_rep	CDS	13842499	13842727	.	-	2	Parent=Os02t0435000-02
Chr02	irgsp1_rep	CDS	13840801	13841071	.	-	1	Parent=Os02t0435000-02
Chr02	irgsp1_rep	three_prime_UTR	13840701	13840800	.	-	.	Parent=Os02t0435000-02
Chr02	irgsp1_rep	mRNA	13855869	13859316	.	-	.	ID=Os02t0435200-01;Name=Os02t0435200-01;Locus_id=Os02g0435200;Note=Hypothetical conserved gene.;Transcript_evidence=AK061297 (DDBJ%2C Best hit);ORF_evidence=NP_001052085.1 (RefSeq);NIAS_FLcDNA=006-301-E01;Expression=AK061297;TENOR=Os02t0435200-01;KEGG=Os02t0435200-01
Chr02	irgsp1_rep	five_prime_UTR	13858896	13859316	.	-	.	Parent=Os02t0435200-01
Chr02	irgsp1_rep	five_prime_UTR	13857027	13857050	.	-	.	Parent=Os02t0435200-01
Chr02	irgsp1_rep	CDS	13856930	13857026	.	-	0	Parent=Os02t0435200-01
Chr02	irgsp1_rep	CDS	13856827	13856843	.	-	2	Parent=Os02t0435200-01
Chr02	irgsp1_rep	three_prime_UTR	13856632	13856826	.	-	.	Parent=Os02t0435200-01
Chr02	irgsp1_rep	three_prime_UTR	13855869	13856144	.	-	.	Parent=Os02t0435200-01
Chr02	irgsp1_rep	mRNA	13863865	13866022	.	+	.	ID=Os02t0435400-01;Name=Os02t0435400-01;Locus_id=Os02g0435400;Note=Conserved hypothetical protein.;Transcript_evidence=AK066254 (DDBJ%2C Best hit);ORF_evidence=B9F5F6 (UniProt);NIAS_FLcDNA=J013058M17;TENOR=Os02t0435400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	13863865	13864301	.	+	.	Parent=Os02t0435400-01
Chr02	irgsp1_rep	five_prime_UTR	13864438	13864718	.	+	.	Parent=Os02t0435400-01
Chr02	irgsp1_rep	five_prime_UTR	13865377	13865785	.	+	.	Parent=Os02t0435400-01
Chr02	irgsp1_rep	CDS	13865786	13865812	.	+	0	Parent=Os02t0435400-01
Chr02	irgsp1_rep	CDS	13865880	13866017	.	+	0	Parent=Os02t0435400-01
Chr02	irgsp1_rep	three_prime_UTR	13866018	13866022	.	+	.	Parent=Os02t0435400-01
Chr02	irgsp1_rep	mRNA	13863865	13866637	.	+	.	ID=Os02t0435400-02;Name=Os02t0435400-02;Locus_id=Os02g0435400;Note=Conserved hypothetical protein.;Transcript_evidence=AK101028 (DDBJ%2C Best hit);ORF_evidence=B9F5F6 (UniProt);NIAS_FLcDNA=J023150G18;TENOR=Os02t0435400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	13863865	13864301	.	+	.	Parent=Os02t0435400-02
Chr02	irgsp1_rep	five_prime_UTR	13864438	13865785	.	+	.	Parent=Os02t0435400-02
Chr02	irgsp1_rep	CDS	13865786	13865812	.	+	0	Parent=Os02t0435400-02
Chr02	irgsp1_rep	CDS	13865880	13866017	.	+	0	Parent=Os02t0435400-02
Chr02	irgsp1_rep	three_prime_UTR	13866018	13866637	.	+	.	Parent=Os02t0435400-02
Chr02	irgsp1_rep	mRNA	13866979	13870657	.	+	.	ID=Os02t0435600-01;Name=Os02t0435600-01;Locus_id=Os02g0435600;Note=Conserved hypothetical protein.;Transcript_evidence=AK122174 (DDBJ%2C Best hit);ORF_evidence=B9GCS5 (UniProt);NIAS_FLcDNA=J033148L01;TENOR=Os02t0435600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	13866979	13867182	.	+	.	Parent=Os02t0435600-01
Chr02	irgsp1_rep	CDS	13867183	13867365	.	+	0	Parent=Os02t0435600-01
Chr02	irgsp1_rep	three_prime_UTR	13867366	13870657	.	+	.	Parent=Os02t0435600-01
Chr02	irgsp1_rep	mRNA	13917306	13923016	.	-	.	ID=Os02t0436400-01;Name=Os02t0436400-01;Locus_id=Os02g0436400;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK065673 (DDBJ%2C Best hit);ORF_evidence=B6TBG3 (UniProt);GO=Biological Process: lysine biosynthetic process via diaminopimelate (GO:0009089),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: chloroplast (GO:0009507),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: dihydrodipicolinate reductase activity (GO:0008839),Molecular Function: NADPH binding (GO:0070402);InterPro=Dihydrodipicolinate reductase%2C N-terminal (IPR000846),Dihydrodipicolinate reductase%2C bacterial/plant (IPR011770),Dihydrodipicolinate reductase%2C plant (IPR011859),NAD(P)-binding domain (IPR016040),Dihydrodipicolinate reductase%2C C-terminal (IPR022663);NIAS_FLcDNA=J013035D19;Expression=AK065673;TENOR=Os02t0436400-01;KEGG=Os02t0436400-01
Chr02	irgsp1_rep	five_prime_UTR	13922938	13923016	.	-	.	Parent=Os02t0436400-01
Chr02	irgsp1_rep	CDS	13922722	13922937	.	-	0	Parent=Os02t0436400-01
Chr02	irgsp1_rep	CDS	13920950	13921187	.	-	0	Parent=Os02t0436400-01
Chr02	irgsp1_rep	CDS	13920278	13920411	.	-	2	Parent=Os02t0436400-01
Chr02	irgsp1_rep	CDS	13920121	13920195	.	-	0	Parent=Os02t0436400-01
Chr02	irgsp1_rep	CDS	13918723	13918824	.	-	0	Parent=Os02t0436400-01
Chr02	irgsp1_rep	CDS	13917857	13917966	.	-	0	Parent=Os02t0436400-01
Chr02	irgsp1_rep	CDS	13917681	13917768	.	-	1	Parent=Os02t0436400-01
Chr02	irgsp1_rep	CDS	13917510	13917578	.	-	0	Parent=Os02t0436400-01
Chr02	irgsp1_rep	three_prime_UTR	13917306	13917509	.	-	.	Parent=Os02t0436400-01
Chr02	irgsp1_rep	mRNA	13924516	13925169	.	+	.	ID=Os02t0436500-00;Name=Os02t0436500-00;Locus_id=Os02g0436500;Note=Hypothetical gene.;Transcript_evidence=CT835304 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os02t0436500-00;KEGG=Os02t0436500-00
Chr02	irgsp1_rep	five_prime_UTR	13924516	13924665	.	+	.	Parent=Os02t0436500-00
Chr02	irgsp1_rep	CDS	13924666	13924917	.	+	0	Parent=Os02t0436500-00
Chr02	irgsp1_rep	three_prime_UTR	13924918	13925169	.	+	.	Parent=Os02t0436500-00
Chr02	irgsp1_rep	mRNA	13949431	13951620	.	-	.	ID=Os02t0437200-01;Name=Os02t0437200-01;Locus_id=Os02g0437200;Oryzabase Gene Symbol Synonym(s)=OsSNAP32%2C SNAP32;Oryzabase Gene Name Synonym(s)=Synaptosomal-associated protein 32%2C Synaptosome-associated protein of 32 kD;Note=SNAP-34.;Transcript_evidence=AK065640 (DDBJ%2C Best hit);ORF_evidence=Q5EEP3 (UniProt);NIAS_FLcDNA=J013038P06;Oryzabase=14681;Expression=AK065640;TENOR=Os02t0437200-01;KEGG=Os02t0437200-01
Chr02	irgsp1_rep	five_prime_UTR	13951399	13951620	.	-	.	Parent=Os02t0437200-01
Chr02	irgsp1_rep	CDS	13950949	13951398	.	-	0	Parent=Os02t0437200-01
Chr02	irgsp1_rep	three_prime_UTR	13949431	13950948	.	-	.	Parent=Os02t0437200-01
Chr02	irgsp1_rep	mRNA	13949561	13951400	.	-	.	ID=Os02t0437200-02;Name=Os02t0437200-02;Locus_id=Os02g0437200;RAP-DB Gene Symbol Synonym(s)=OsSNAP32;RAP-DB Gene Name Synonym(s)=Synaptosome-associated protein of 32 kDa%2C Synaptosomal-associated protein 32;Oryzabase Gene Symbol Synonym(s)=OsSNAP32%2C SNAP32;Oryzabase Gene Name Synonym(s)=Synaptosomal-associated protein 32%2C Synaptosome-associated protein of 32 kD;Note=SNAP25-type SNARE protein%2C Rice blast resistance;Transcript_evidence=AY900120;ORF_evidence=Q5EEP3;InterPro=Target SNARE coiled-coil homology domain (IPR000727);Manual Curation=January 31%2C 2019;Literature_PMID=30617050,17380428,DOI:10.1007/s10725-016-0152-4;Oryzabase=14681;Subcellular location=plasma membrane (GO:0005886)
Chr02	irgsp1_rep	five_prime_UTR	13951399	13951400	.	-	.	Parent=Os02t0437200-02
Chr02	irgsp1_rep	CDS	13950967	13951398	.	-	0	Parent=Os02t0437200-02
Chr02	irgsp1_rep	CDS	13950627	13950720	.	-	0	Parent=Os02t0437200-02
Chr02	irgsp1_rep	CDS	13950363	13950490	.	-	2	Parent=Os02t0437200-02
Chr02	irgsp1_rep	CDS	13950191	13950288	.	-	0	Parent=Os02t0437200-02
Chr02	irgsp1_rep	CDS	13949721	13949820	.	-	1	Parent=Os02t0437200-02
Chr02	irgsp1_rep	three_prime_UTR	13949561	13949720	.	-	.	Parent=Os02t0437200-02
Chr02	irgsp1_rep	mRNA	13962353	13967573	.	-	.	ID=Os02t0437300-01;Name=Os02t0437300-01;Locus_id=Os02g0437300;Note=Conserved hypothetical protein.;Transcript_evidence=AK106928 (DDBJ%2C Best hit);ORF_evidence=Q6ZDH9 (UniProt);NIAS_FLcDNA=002-119-B12;TENOR=Os02t0437300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	13967231	13967573	.	-	.	Parent=Os02t0437300-01
Chr02	irgsp1_rep	CDS	13967105	13967230	.	-	0	Parent=Os02t0437300-01
Chr02	irgsp1_rep	three_prime_UTR	13965386	13967104	.	-	.	Parent=Os02t0437300-01
Chr02	irgsp1_rep	three_prime_UTR	13964139	13964199	.	-	.	Parent=Os02t0437300-01
Chr02	irgsp1_rep	three_prime_UTR	13963189	13963321	.	-	.	Parent=Os02t0437300-01
Chr02	irgsp1_rep	three_prime_UTR	13962353	13962568	.	-	.	Parent=Os02t0437300-01
Chr02	irgsp1_rep	mRNA	13978689	13987430	.	-	.	ID=Os02t0437800-01;Name=Os02t0437800-01;Locus_id=Os02g0437800;Oryzabase Gene Name Synonym(s)=Vacuolar protein-sorting protein45 homolog%2C Vacuolar protein-sorting protein 45 homolog%2C AtVPS45 homolog;Note=Similar to vacuolar protein-sorting protein 45.;Transcript_evidence=AK067724 (DDBJ%2C Best hit);ORF_evidence=B6UDC0 (UniProt);GO=Biological Process: vesicle docking involved in exocytosis (GO:0006904),Biological Process: vesicle-mediated transport (GO:0016192);InterPro=Sec1-like protein (IPR001619);NIAS_FLcDNA=J013118J06;Oryzabase=20524;Expression=AK067724;TENOR=Os02t0437800-01;KEGG=Os02t0437800-01
Chr02	irgsp1_rep	five_prime_UTR	13987165	13987430	.	-	.	Parent=Os02t0437800-01
Chr02	irgsp1_rep	CDS	13987075	13987164	.	-	0	Parent=Os02t0437800-01
Chr02	irgsp1_rep	CDS	13986785	13986986	.	-	0	Parent=Os02t0437800-01
Chr02	irgsp1_rep	CDS	13985464	13985543	.	-	2	Parent=Os02t0437800-01
Chr02	irgsp1_rep	CDS	13985134	13985361	.	-	0	Parent=Os02t0437800-01
Chr02	irgsp1_rep	CDS	13984158	13984283	.	-	0	Parent=Os02t0437800-01
Chr02	irgsp1_rep	CDS	13983995	13984075	.	-	0	Parent=Os02t0437800-01
Chr02	irgsp1_rep	CDS	13983766	13983907	.	-	0	Parent=Os02t0437800-01
Chr02	irgsp1_rep	CDS	13980520	13980698	.	-	2	Parent=Os02t0437800-01
Chr02	irgsp1_rep	CDS	13979628	13979783	.	-	0	Parent=Os02t0437800-01
Chr02	irgsp1_rep	CDS	13978689	13978787	.	-	0	Parent=Os02t0437800-01
Chr02	irgsp1_rep	mRNA	13977651	13987361	.	-	.	ID=Os02t0437800-02;Name=Os02t0437800-02;Locus_id=Os02g0437800;Oryzabase Gene Name Synonym(s)=Vacuolar protein-sorting protein45 homolog%2C Vacuolar protein-sorting protein 45 homolog%2C AtVPS45 homolog;Note=Similar to Vacuolar protein-sorting protein 45 homolog (AtVPS45).;Transcript_evidence=AK066001 (DDBJ%2C Best hit);ORF_evidence=B6UDC0 (UniProt);GO=Biological Process: vesicle docking involved in exocytosis (GO:0006904),Biological Process: vesicle-mediated transport (GO:0016192);InterPro=Sec1-like protein (IPR001619);NIAS_FLcDNA=J013049L06;Oryzabase=20524;Expression=AK066001;TENOR=Os02t0437800-02;KEGG=Os02t0437800-02
Chr02	irgsp1_rep	five_prime_UTR	13987165	13987361	.	-	.	Parent=Os02t0437800-02
Chr02	irgsp1_rep	CDS	13987075	13987164	.	-	0	Parent=Os02t0437800-02
Chr02	irgsp1_rep	CDS	13986785	13986986	.	-	0	Parent=Os02t0437800-02
Chr02	irgsp1_rep	CDS	13985464	13985543	.	-	2	Parent=Os02t0437800-02
Chr02	irgsp1_rep	CDS	13985134	13985361	.	-	0	Parent=Os02t0437800-02
Chr02	irgsp1_rep	CDS	13984158	13984283	.	-	0	Parent=Os02t0437800-02
Chr02	irgsp1_rep	CDS	13983995	13984075	.	-	0	Parent=Os02t0437800-02
Chr02	irgsp1_rep	CDS	13983766	13983907	.	-	0	Parent=Os02t0437800-02
Chr02	irgsp1_rep	CDS	13980520	13980698	.	-	2	Parent=Os02t0437800-02
Chr02	irgsp1_rep	CDS	13979628	13979783	.	-	0	Parent=Os02t0437800-02
Chr02	irgsp1_rep	CDS	13978680	13978787	.	-	0	Parent=Os02t0437800-02
Chr02	irgsp1_rep	CDS	13978482	13978603	.	-	0	Parent=Os02t0437800-02
Chr02	irgsp1_rep	CDS	13978138	13978269	.	-	1	Parent=Os02t0437800-02
Chr02	irgsp1_rep	CDS	13977955	13978012	.	-	1	Parent=Os02t0437800-02
Chr02	irgsp1_rep	three_prime_UTR	13977651	13977954	.	-	.	Parent=Os02t0437800-02
Chr02	irgsp1_rep	mRNA	13983506	13987358	.	-	.	ID=Os02t0437800-03;Name=Os02t0437800-03;Locus_id=Os02g0437800;Oryzabase Gene Name Synonym(s)=Vacuolar protein-sorting protein45 homolog%2C Vacuolar protein-sorting protein 45 homolog%2C AtVPS45 homolog;Note=Similar to vacuolar protein-sorting protein 45.;Transcript_evidence=AK064288 (DDBJ%2C Best hit);ORF_evidence=B6UDC0 (UniProt);GO=Biological Process: vesicle docking involved in exocytosis (GO:0006904),Biological Process: vesicle-mediated transport (GO:0016192);InterPro=Sec1-like protein (IPR001619);NIAS_FLcDNA=002-105-H02;Oryzabase=20524;Expression=AK064288;TENOR=Os02t0437800-03;KEGG=Os02t0437800-03
Chr02	irgsp1_rep	five_prime_UTR	13987165	13987358	.	-	.	Parent=Os02t0437800-03
Chr02	irgsp1_rep	CDS	13987075	13987164	.	-	0	Parent=Os02t0437800-03
Chr02	irgsp1_rep	CDS	13986785	13986986	.	-	0	Parent=Os02t0437800-03
Chr02	irgsp1_rep	CDS	13985464	13985543	.	-	2	Parent=Os02t0437800-03
Chr02	irgsp1_rep	CDS	13985134	13985361	.	-	0	Parent=Os02t0437800-03
Chr02	irgsp1_rep	CDS	13984158	13984283	.	-	0	Parent=Os02t0437800-03
Chr02	irgsp1_rep	CDS	13983995	13984075	.	-	0	Parent=Os02t0437800-03
Chr02	irgsp1_rep	CDS	13983620	13983907	.	-	0	Parent=Os02t0437800-03
Chr02	irgsp1_rep	three_prime_UTR	13983506	13983619	.	-	.	Parent=Os02t0437800-03
Chr02	irgsp1_rep	mRNA	13990352	13994427	.	-	.	ID=Os02t0437901-00;Name=Os02t0437901-00;Locus_id=Os02g0437901;Note=Hypothetical gene.;Transcript_evidence=CU406461 (DDBJ%2C Best hit);ORF_evidence=D8LAQ9 (UniProt);TENOR=Os02t0437901-00;KEGG=Os02t0437901-00
Chr02	irgsp1_rep	five_prime_UTR	13993897	13994427	.	-	.	Parent=Os02t0437901-00
Chr02	irgsp1_rep	CDS	13993601	13993896	.	-	0	Parent=Os02t0437901-00
Chr02	irgsp1_rep	CDS	13993360	13993469	.	-	1	Parent=Os02t0437901-00
Chr02	irgsp1_rep	CDS	13993172	13993218	.	-	2	Parent=Os02t0437901-00
Chr02	irgsp1_rep	three_prime_UTR	13993110	13993171	.	-	.	Parent=Os02t0437901-00
Chr02	irgsp1_rep	three_prime_UTR	13990352	13990783	.	-	.	Parent=Os02t0437901-00
Chr02	irgsp1_rep	mRNA	14006914	14018122	.	+	.	ID=Os02t0438200-01;Name=Os02t0438200-01;Locus_id=Os02g0438200;CGSNL Gene Symbol=CYCT1%3B1;CGSNL Gene Name=CYCLIN-T1-1;Oryzabase Gene Symbol Synonym(s)=CycT1%3B1%2C CycT1%3Bos%3B1%2C Orysa%3BCycT1%3B1%2C CYCT1;Oryzabase Gene Name Synonym(s)=T-type cyclin 1%3B1;Note=Transcription regulator cyclin domain containing protein.;Transcript_evidence=AK107537 (DDBJ%2C Best hit);ORF_evidence=Q6Z7H3 (UniProt);GO=Biological Process: regulation of cyclin-dependent protein kinase activity (GO:0000079),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763),Cyclin C/H/T/L (IPR015429);NIAS_FLcDNA=002-129-H05;Oryzabase=13275;Expression=AK107537;TENOR=Os02t0438200-01;KEGG=Os02t0438200-01
Chr02	irgsp1_rep	five_prime_UTR	14006914	14007501	.	+	.	Parent=Os02t0438200-01
Chr02	irgsp1_rep	five_prime_UTR	14007834	14007897	.	+	.	Parent=Os02t0438200-01
Chr02	irgsp1_rep	five_prime_UTR	14014497	14014587	.	+	.	Parent=Os02t0438200-01
Chr02	irgsp1_rep	CDS	14014588	14014769	.	+	0	Parent=Os02t0438200-01
Chr02	irgsp1_rep	CDS	14014939	14015020	.	+	1	Parent=Os02t0438200-01
Chr02	irgsp1_rep	CDS	14015952	14016086	.	+	0	Parent=Os02t0438200-01
Chr02	irgsp1_rep	CDS	14016166	14016341	.	+	0	Parent=Os02t0438200-01
Chr02	irgsp1_rep	CDS	14016437	14016588	.	+	1	Parent=Os02t0438200-01
Chr02	irgsp1_rep	CDS	14016675	14017840	.	+	2	Parent=Os02t0438200-01
Chr02	irgsp1_rep	three_prime_UTR	14017841	14018122	.	+	.	Parent=Os02t0438200-01
Chr02	irgsp1_rep	mRNA	14011216	14017925	.	+	.	ID=Os02t0438200-02;Name=Os02t0438200-02;Locus_id=Os02g0438200;CGSNL Gene Symbol=CYCT1%3B1;CGSNL Gene Name=CYCLIN-T1-1;Oryzabase Gene Symbol Synonym(s)=CycT1%3B1%2C CycT1%3Bos%3B1%2C Orysa%3BCycT1%3B1%2C CYCT1;Oryzabase Gene Name Synonym(s)=T-type cyclin 1%3B1;Note=Similar to Cyclin-T1-2.;Transcript_evidence=AK102728 (DDBJ%2C Best hit);ORF_evidence=B7F0D1 (UniProt);GO=Biological Process: regulation of cyclin-dependent protein kinase activity (GO:0000079),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763),Cyclin C/H/T/L (IPR015429);NIAS_FLcDNA=J033105N11;Oryzabase=13275;Expression=AK102728;TENOR=Os02t0438200-02;KEGG=Os02t0438200-02
Chr02	irgsp1_rep	five_prime_UTR	14011216	14011369	.	+	.	Parent=Os02t0438200-02
Chr02	irgsp1_rep	five_prime_UTR	14014499	14014587	.	+	.	Parent=Os02t0438200-02
Chr02	irgsp1_rep	CDS	14014588	14014769	.	+	0	Parent=Os02t0438200-02
Chr02	irgsp1_rep	CDS	14014939	14015020	.	+	1	Parent=Os02t0438200-02
Chr02	irgsp1_rep	CDS	14015952	14016086	.	+	0	Parent=Os02t0438200-02
Chr02	irgsp1_rep	CDS	14016261	14016272	.	+	0	Parent=Os02t0438200-02
Chr02	irgsp1_rep	three_prime_UTR	14016273	14016341	.	+	.	Parent=Os02t0438200-02
Chr02	irgsp1_rep	three_prime_UTR	14016437	14016588	.	+	.	Parent=Os02t0438200-02
Chr02	irgsp1_rep	three_prime_UTR	14016675	14017925	.	+	.	Parent=Os02t0438200-02
Chr02	irgsp1_rep	mRNA	14019987	14020476	.	+	.	ID=Os02t0438500-01;Name=Os02t0438500-01;Locus_id=Os02g0438500;Note=Conserved hypothetical protein.;Transcript_evidence=AK107927 (DDBJ%2C Best hit);ORF_evidence=NP_001048302.1 (RefSeq);NIAS_FLcDNA=002-134-H10;TENOR=Os02t0438500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	14019987	14020005	.	+	.	Parent=Os02t0438500-01
Chr02	irgsp1_rep	CDS	14020006	14020077	.	+	0	Parent=Os02t0438500-01
Chr02	irgsp1_rep	three_prime_UTR	14020078	14020476	.	+	.	Parent=Os02t0438500-01
Chr02	irgsp1_rep	mRNA	14021507	14022318	.	-	.	ID=Os02t0438601-01;Name=Os02t0438601-01;Locus_id=Os02g0438601;Note=Conserved hypothetical protein.;Transcript_evidence=AK242228 (DDBJ%2C Best hit);ORF_evidence=Q5VP14 (UniProt);NIAS_FLcDNA=J075175E22;TENOR=Os02t0438601-01;KEGG=Os02t0438601-01
Chr02	irgsp1_rep	five_prime_UTR	14022317	14022318	.	-	.	Parent=Os02t0438601-01
Chr02	irgsp1_rep	CDS	14022017	14022316	.	-	0	Parent=Os02t0438601-01
Chr02	irgsp1_rep	three_prime_UTR	14021507	14022016	.	-	.	Parent=Os02t0438601-01
Chr02	irgsp1_rep	mRNA	14019736	14022159	.	-	.	ID=Os02t0438601-02;Name=Os02t0438601-02;Locus_id=Os02g0438601;Note=Similar to Kinesin heavy chain (Fragment).;Transcript_evidence=AK287839 (DDBJ%2C Best hit);ORF_evidence=Q93XF4 (UniProt);NIAS_FLcDNA=J065193C18;TENOR=Os02t0438601-02;KEGG=Os02t0438601-02
Chr02	irgsp1_rep	five_prime_UTR	14020841	14022159	.	-	.	Parent=Os02t0438601-02
Chr02	irgsp1_rep	CDS	14020688	14020840	.	-	0	Parent=Os02t0438601-02
Chr02	irgsp1_rep	three_prime_UTR	14019736	14020687	.	-	.	Parent=Os02t0438601-02
Chr02	irgsp1_rep	mRNA	14025873	14026537	.	+	.	ID=Os02t0438700-01;Name=Os02t0438700-01;Locus_id=Os02g0438700;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=AK062610 (DDBJ%2C Best hit);ORF_evidence=Q2R8G8 (UniProt);NIAS_FLcDNA=001-105-A07;TENOR=Os02t0438700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	14025873	14026095	.	+	.	Parent=Os02t0438700-01
Chr02	irgsp1_rep	CDS	14026096	14026290	.	+	0	Parent=Os02t0438700-01
Chr02	irgsp1_rep	three_prime_UTR	14026291	14026537	.	+	.	Parent=Os02t0438700-01
Chr02	irgsp1_rep	mRNA	14025916	14027942	.	+	.	ID=Os02t0438700-02;Name=Os02t0438700-02;Locus_id=Os02g0438700;Note=Hypothetical protein.;Transcript_evidence=AK105276 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-116-A12;Expression=AK105276;TENOR=Os02t0438700-02;KEGG=Os02t0438700-02
Chr02	irgsp1_rep	five_prime_UTR	14025916	14025995	.	+	.	Parent=Os02t0438700-02
Chr02	irgsp1_rep	CDS	14025996	14026283	.	+	0	Parent=Os02t0438700-02
Chr02	irgsp1_rep	three_prime_UTR	14026284	14026721	.	+	.	Parent=Os02t0438700-02
Chr02	irgsp1_rep	three_prime_UTR	14026830	14027942	.	+	.	Parent=Os02t0438700-02
Chr02	irgsp1_rep	mRNA	14055092	14057029	.	+	.	ID=Os02t0438900-00;Name=Os02t0438900-00;Locus_id=Os02g0438900;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6Z7G7 (UniProt);TENOR=Os02t0438900-00
Chr02	irgsp1_rep	CDS	14055092	14055257	.	+	0	Parent=Os02t0438900-00
Chr02	irgsp1_rep	CDS	14056737	14057029	.	+	2	Parent=Os02t0438900-00
Chr02	irgsp1_rep	mRNA	14073571	14076360	.	+	.	ID=Os02t0439200-00;Name=Os02t0439200-00;Locus_id=Os02g0439200;Note=Protein kinase PKN/PRK1%2C effector domain containing protein.;Transcript_evidence=CT835337 (DDBJ%2C Best hit);ORF_evidence=NP_001046742.1 (RefSeq);InterPro=Protein of unknown function DUF827%2C plant (IPR008545);TENOR=Os02t0439200-00;KEGG=Os02t0439200-00
Chr02	irgsp1_rep	five_prime_UTR	14073571	14073714	.	+	.	Parent=Os02t0439200-00
Chr02	irgsp1_rep	CDS	14073715	14073737	.	+	0	Parent=Os02t0439200-00
Chr02	irgsp1_rep	CDS	14073864	14074071	.	+	1	Parent=Os02t0439200-00
Chr02	irgsp1_rep	CDS	14074197	14076134	.	+	0	Parent=Os02t0439200-00
Chr02	irgsp1_rep	three_prime_UTR	14076135	14076360	.	+	.	Parent=Os02t0439200-00
Chr02	irgsp1_rep	mRNA	14115755	14119381	.	+	.	ID=Os02t0439700-01;Name=Os02t0439700-01;Locus_id=Os02g0439700;Note=Plant specific eukaryotic initiation factor 4B family protein.;Transcript_evidence=AK067803 (DDBJ%2C Best hit);ORF_evidence=F2E4E2 (UniProt);InterPro=Plant specific eukaryotic initiation factor 4B (IPR010433);NIAS_FLcDNA=J013118G17;Expression=AK067803;TENOR=Os02t0439700-01;KEGG=Os02t0439700-01
Chr02	irgsp1_rep	five_prime_UTR	14115755	14115833	.	+	.	Parent=Os02t0439700-01
Chr02	irgsp1_rep	CDS	14115834	14117159	.	+	0	Parent=Os02t0439700-01
Chr02	irgsp1_rep	three_prime_UTR	14117160	14119381	.	+	.	Parent=Os02t0439700-01
Chr02	irgsp1_rep	mRNA	14124447	14132084	.	-	.	ID=Os02t0440000-01;Name=Os02t0440000-01;Locus_id=Os02g0440000;Note=Similar to Diaminopimelate decarboxylase.;Transcript_evidence=AK067100 (DDBJ%2C Best hit);ORF_evidence=B6T3H3 (UniProt);GO=Biological Process: lysine biosynthetic process via diaminopimelate (GO:0009089),Molecular Function: catalytic activity (GO:0003824),Molecular Function: diaminopimelate decarboxylase activity (GO:0008836);InterPro=Ornithine/DAP/Arg decarboxylase (IPR000183),Diaminopimelate decarboxylase%2C LysA (IPR002986),Alanine racemase/group IV decarboxylase%2C C-terminal (IPR009006),Orn/DAP/Arg decarboxylase 2%2C C-terminal (IPR022643),Orn/DAP/Arg decarboxylase 2%2C N-terminal (IPR022644),Orn/DAP/Arg decarboxylase 2%2C pyridoxal-phosphate binding site (IPR022653),Orn/DAP/Arg decarboxylase 2%2C conserved site (IPR022657);NIAS_FLcDNA=J013098O07;Expression=AK067100;TENOR=Os02t0440000-01;KEGG=Os02t0440000-01 (EC:4.1.1.20)
Chr02	irgsp1_rep	five_prime_UTR	14132041	14132084	.	-	.	Parent=Os02t0440000-01
Chr02	irgsp1_rep	CDS	14131538	14132040	.	-	0	Parent=Os02t0440000-01
Chr02	irgsp1_rep	CDS	14130675	14130849	.	-	1	Parent=Os02t0440000-01
Chr02	irgsp1_rep	CDS	14129796	14129945	.	-	0	Parent=Os02t0440000-01
Chr02	irgsp1_rep	CDS	14125896	14126057	.	-	0	Parent=Os02t0440000-01
Chr02	irgsp1_rep	CDS	14125561	14125746	.	-	0	Parent=Os02t0440000-01
Chr02	irgsp1_rep	CDS	14125124	14125243	.	-	0	Parent=Os02t0440000-01
Chr02	irgsp1_rep	CDS	14124965	14125054	.	-	0	Parent=Os02t0440000-01
Chr02	irgsp1_rep	CDS	14124754	14124840	.	-	0	Parent=Os02t0440000-01
Chr02	irgsp1_rep	three_prime_UTR	14124447	14124753	.	-	.	Parent=Os02t0440000-01
Chr02	irgsp1_rep	mRNA	14124522	14130755	.	-	.	ID=Os02t0440000-02;Name=Os02t0440000-02;Locus_id=Os02g0440000;Note=Similar to cDNA clone:J013098O07%2C full insert sequence.;Transcript_evidence=AK062153 (DDBJ%2C Best hit);ORF_evidence=B7ED21 (UniProt);GO=Biological Process: lysine biosynthetic process via diaminopimelate (GO:0009089),Molecular Function: catalytic activity (GO:0003824),Molecular Function: diaminopimelate decarboxylase activity (GO:0008836);InterPro=Ornithine/DAP/Arg decarboxylase (IPR000183),Diaminopimelate decarboxylase%2C LysA (IPR002986),Alanine racemase/group IV decarboxylase%2C C-terminal (IPR009006),Orn/DAP/Arg decarboxylase 2%2C C-terminal (IPR022643),Orn/DAP/Arg decarboxylase 2%2C N-terminal (IPR022644),Orn/DAP/Arg decarboxylase 2%2C conserved site (IPR022657);NIAS_FLcDNA=001-045-H07;Expression=AK062153;TENOR=Os02t0440000-02;KEGG=Os02t0440000-02 (EC:4.1.1.20)
Chr02	irgsp1_rep	CDS	14130675	14130755	.	-	0	Parent=Os02t0440000-02
Chr02	irgsp1_rep	CDS	14129796	14129945	.	-	0	Parent=Os02t0440000-02
Chr02	irgsp1_rep	CDS	14125896	14126057	.	-	0	Parent=Os02t0440000-02
Chr02	irgsp1_rep	CDS	14125561	14125746	.	-	0	Parent=Os02t0440000-02
Chr02	irgsp1_rep	CDS	14125124	14125243	.	-	0	Parent=Os02t0440000-02
Chr02	irgsp1_rep	CDS	14124965	14125054	.	-	0	Parent=Os02t0440000-02
Chr02	irgsp1_rep	CDS	14124754	14124840	.	-	0	Parent=Os02t0440000-02
Chr02	irgsp1_rep	three_prime_UTR	14124522	14124753	.	-	.	Parent=Os02t0440000-02
Chr02	irgsp1_rep	mRNA	14162331	14166278	.	+	.	ID=Os02t0440900-00;Name=Os02t0440900-00;Locus_id=Os02g0440900;Oryzabase Gene Symbol Synonym(s)=OsSNDP2%2C SNDP2;Oryzabase Gene Name Synonym(s)=Sec14-nodulin domain-containing protein 2%2C Sec14-nodulin domain protein 2;Note=Similar to predicted protein.;Transcript_evidence=AK365115 (DDBJ);ORF_evidence=B0BLI8 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: intracellular (GO:0005622),Molecular Function: transporter activity (GO:0005215);InterPro=Cellular retinaldehyde binding/alpha-tocopherol transport (IPR001071),Cellular retinaldehyde-binding/triple function%2C C-terminal (IPR001251),Cellular retinaldehyde-binding/triple function%2C N-terminal (IPR008273),Phosphatidylinositol transfer protein-like%2C N-terminal (IPR011074);Oryzabase=12286;TENOR=Os02t0440900-00;KEGG=Os02t0440900-00
Chr02	irgsp1_rep	five_prime_UTR	14162331	14162354	.	+	.	Parent=Os02t0440900-00
Chr02	irgsp1_rep	CDS	14162355	14162400	.	+	0	Parent=Os02t0440900-00
Chr02	irgsp1_rep	CDS	14162674	14162956	.	+	2	Parent=Os02t0440900-00
Chr02	irgsp1_rep	CDS	14163042	14163141	.	+	1	Parent=Os02t0440900-00
Chr02	irgsp1_rep	CDS	14163245	14163511	.	+	0	Parent=Os02t0440900-00
Chr02	irgsp1_rep	CDS	14163596	14163673	.	+	0	Parent=Os02t0440900-00
Chr02	irgsp1_rep	CDS	14163770	14163871	.	+	0	Parent=Os02t0440900-00
Chr02	irgsp1_rep	CDS	14163949	14163998	.	+	0	Parent=Os02t0440900-00
Chr02	irgsp1_rep	CDS	14164082	14164175	.	+	1	Parent=Os02t0440900-00
Chr02	irgsp1_rep	CDS	14164278	14164379	.	+	0	Parent=Os02t0440900-00
Chr02	irgsp1_rep	CDS	14164491	14164607	.	+	0	Parent=Os02t0440900-00
Chr02	irgsp1_rep	CDS	14165073	14165178	.	+	0	Parent=Os02t0440900-00
Chr02	irgsp1_rep	CDS	14165274	14165632	.	+	2	Parent=Os02t0440900-00
Chr02	irgsp1_rep	CDS	14165790	14165864	.	+	0	Parent=Os02t0440900-00
Chr02	irgsp1_rep	CDS	14166108	14166125	.	+	0	Parent=Os02t0440900-00
Chr02	irgsp1_rep	three_prime_UTR	14166126	14166278	.	+	.	Parent=Os02t0440900-00
Chr02	irgsp1_rep	mRNA	14162694	14164177	.	-	.	ID=Os02t0443001-00;Name=Os02t0443001-00;Locus_id=Os02g0443001;Note=Hypothetical protein.;Transcript_evidence=tplb0036h18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0443001-00
Chr02	irgsp1_rep	five_prime_UTR	14164054	14164177	.	-	.	Parent=Os02t0443001-00
Chr02	irgsp1_rep	CDS	14164042	14164053	.	-	0	Parent=Os02t0443001-00
Chr02	irgsp1_rep	CDS	14163572	14163880	.	-	0	Parent=Os02t0443001-00
Chr02	irgsp1_rep	three_prime_UTR	14163221	14163571	.	-	.	Parent=Os02t0443001-00
Chr02	irgsp1_rep	three_prime_UTR	14163038	14163121	.	-	.	Parent=Os02t0443001-00
Chr02	irgsp1_rep	three_prime_UTR	14162694	14162951	.	-	.	Parent=Os02t0443001-00
Chr02	irgsp1_rep	mRNA	14333093	14333865	.	+	.	ID=Os02t0445100-01;Name=Os02t0445100-01;Locus_id=Os02g0445100;CGSNL Gene Symbol=SAUR8;CGSNL Gene Name=SMALL AUXIN-UP RNA 8;Oryzabase Gene Symbol Synonym(s)=OsSAUR8;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 8;Note=Similar to Auxin-induced SAUR-like protein.;Transcript_evidence=AK063247 (DDBJ%2C Best hit);ORF_evidence=A2X4C2 (UniProt);InterPro=Auxin responsive SAUR protein (IPR003676);NIAS_FLcDNA=001-112-G12;Oryzabase=9133;Expression=AK063247;TENOR=Os02t0445100-01;KEGG=Os02t0445100-01
Chr02	irgsp1_rep	five_prime_UTR	14333093	14333230	.	+	.	Parent=Os02t0445100-01
Chr02	irgsp1_rep	CDS	14333231	14333521	.	+	0	Parent=Os02t0445100-01
Chr02	irgsp1_rep	three_prime_UTR	14333522	14333865	.	+	.	Parent=Os02t0445100-01
Chr02	irgsp1_rep	mRNA	14334654	14338963	.	+	.	ID=Os02t0445200-00;Name=Os02t0445200-00;Locus_id=Os02g0445200;Note=Similar to SLP16.;Transcript_evidence=BT038156 (DDBJ);ORF_evidence=E3W6C9 (UniProt);TENOR=Os02t0445200-00
Chr02	irgsp1_rep	CDS	14334654	14335101	.	+	0	Parent=Os02t0445200-00
Chr02	irgsp1_rep	CDS	14338701	14338963	.	+	2	Parent=Os02t0445200-00
Chr02	irgsp1_rep	mRNA	14337050	14337385	.	+	.	ID=Os02t0445300-00;Name=Os02t0445300-00;Locus_id=Os02g0445300;Note=Similar to Non-specific lipid-transfer protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8AH40 (UniProt);GO=Biological Process: lipid transport (GO:0006869),Molecular Function: lipid binding (GO:0008289);InterPro=Plant lipid transfer protein/Par allergen (IPR000528),Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);TENOR=Os02t0445300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	14337050	14337285	.	+	0	Parent=Os02t0445300-00
Chr02	irgsp1_rep	CDS	14337376	14337385	.	+	1	Parent=Os02t0445300-00
Chr02	irgsp1_rep	mRNA	14355594	14356170	.	+	.	ID=Os02t0445600-01;Name=Os02t0445600-01;Locus_id=Os02g0445600;CGSNL Gene Symbol=SAUR9;CGSNL Gene Name=SMALL AUXIN-UP RNA 9;Oryzabase Gene Symbol Synonym(s)=OsSAUR9%2C SAUR50;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 9;Note=Similar to Auxin-induced SAUR-like protein (Fragment).;Transcript_evidence=AK063150 (DDBJ%2C Best hit);ORF_evidence=XP_002300717.1 (RefSeq);InterPro=Auxin responsive SAUR protein (IPR003676);NIAS_FLcDNA=001-111-H06;Oryzabase=9134;Expression=AK063150;TENOR=Os02t0445600-01;KEGG=Os02t0445600-01
Chr02	irgsp1_rep	five_prime_UTR	14355594	14355595	.	+	.	Parent=Os02t0445600-01
Chr02	irgsp1_rep	CDS	14355596	14355889	.	+	0	Parent=Os02t0445600-01
Chr02	irgsp1_rep	three_prime_UTR	14355890	14356170	.	+	.	Parent=Os02t0445600-01
Chr02	irgsp1_rep	mRNA	14356945	14362182	.	-	.	ID=Os02t0445700-01;Name=Os02t0445700-01;Locus_id=Os02g0445700;Note=Conserved hypothetical protein.;Transcript_evidence=AK242653 (DDBJ%2C Best hit);ORF_evidence=Q6EUA5 (UniProt);NIAS_FLcDNA=J090026I09;TENOR=Os02t0445700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	14361862	14362182	.	-	.	Parent=Os02t0445700-01
Chr02	irgsp1_rep	CDS	14361229	14361861	.	-	0	Parent=Os02t0445700-01
Chr02	irgsp1_rep	three_prime_UTR	14361175	14361228	.	-	.	Parent=Os02t0445700-01
Chr02	irgsp1_rep	three_prime_UTR	14360894	14361084	.	-	.	Parent=Os02t0445700-01
Chr02	irgsp1_rep	three_prime_UTR	14360722	14360813	.	-	.	Parent=Os02t0445700-01
Chr02	irgsp1_rep	three_prime_UTR	14360327	14360635	.	-	.	Parent=Os02t0445700-01
Chr02	irgsp1_rep	three_prime_UTR	14360148	14360228	.	-	.	Parent=Os02t0445700-01
Chr02	irgsp1_rep	three_prime_UTR	14358260	14358364	.	-	.	Parent=Os02t0445700-01
Chr02	irgsp1_rep	three_prime_UTR	14358061	14358132	.	-	.	Parent=Os02t0445700-01
Chr02	irgsp1_rep	three_prime_UTR	14357495	14357655	.	-	.	Parent=Os02t0445700-01
Chr02	irgsp1_rep	three_prime_UTR	14356945	14357394	.	-	.	Parent=Os02t0445700-01
Chr02	irgsp1_rep	mRNA	14390199	14394975	.	-	.	ID=Os02t0446100-01;Name=Os02t0446100-01;Locus_id=Os02g0446100;Note=Similar to H1005F08.19 protein.;Transcript_evidence=AK072877 (DDBJ%2C Best hit);ORF_evidence=Q01MM5 (UniProt);NIAS_FLcDNA=J023146A14;TENOR=Os02t0446100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	14394975	14394975	.	-	.	Parent=Os02t0446100-01
Chr02	irgsp1_rep	CDS	14394742	14394974	.	-	0	Parent=Os02t0446100-01
Chr02	irgsp1_rep	CDS	14390951	14391096	.	-	1	Parent=Os02t0446100-01
Chr02	irgsp1_rep	CDS	14390734	14390840	.	-	2	Parent=Os02t0446100-01
Chr02	irgsp1_rep	three_prime_UTR	14390199	14390733	.	-	.	Parent=Os02t0446100-01
Chr02	irgsp1_rep	mRNA	14507969	14509296	.	+	.	ID=Os02t0448000-00;Name=Os02t0448000-00;Locus_id=Os02g0448000;Note=Protein of unknown function DUF296 domain containing protein.;Transcript_evidence=EU952830 (DDBJ);ORF_evidence=NP_001146992.1 (RefSeq);InterPro=Domain of unknown function DUF296 (IPR005175),Predicted AT-hook DNA-binding (IPR014476);TENOR=Os02t0448000-00;KEGG=Os02t0448000-00
Chr02	irgsp1_rep	five_prime_UTR	14507969	14508192	.	+	.	Parent=Os02t0448000-00
Chr02	irgsp1_rep	CDS	14508193	14509143	.	+	0	Parent=Os02t0448000-00
Chr02	irgsp1_rep	three_prime_UTR	14509144	14509296	.	+	.	Parent=Os02t0448000-00
Chr02	irgsp1_rep	mRNA	14529681	14537401	.	-	.	ID=Os02t0448400-01;Name=Os02t0448400-01;Locus_id=Os02g0448400;CGSNL Gene Symbol=NTMC2T1.1;CGSNL Gene Name=N-TERMINAL-TM-C2 DOMAIN PROTEIN 1.1;Oryzabase Gene Symbol Synonym(s)=OsNTMC2T1.1;Oryzabase Gene Name Synonym(s)=N-terminal-TM-C2 domain protein 1.1%2C N-terminal trans- membrane and C2 domain protein 1.1%2C NTMC2 type 1.1 protein%2C NTMC2 family gene 1.1;Note=Similar to Synaptotagmin C.;Transcript_evidence=AK064509 (DDBJ%2C Best hit);ORF_evidence=NP_001152047.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),C2 membrane targeting protein (IPR018029),C2 region (IPR020477);NIAS_FLcDNA=002-111-E04;Oryzabase=22119;Expression=AK064509;TENOR=Os02t0448400-01;KEGG=Os02t0448400-01
Chr02	irgsp1_rep	five_prime_UTR	14537291	14537401	.	-	.	Parent=Os02t0448400-01
Chr02	irgsp1_rep	CDS	14537180	14537290	.	-	0	Parent=Os02t0448400-01
Chr02	irgsp1_rep	CDS	14536011	14536109	.	-	0	Parent=Os02t0448400-01
Chr02	irgsp1_rep	CDS	14535846	14535896	.	-	0	Parent=Os02t0448400-01
Chr02	irgsp1_rep	CDS	14535643	14535766	.	-	0	Parent=Os02t0448400-01
Chr02	irgsp1_rep	CDS	14533184	14533302	.	-	2	Parent=Os02t0448400-01
Chr02	irgsp1_rep	CDS	14532939	14533040	.	-	0	Parent=Os02t0448400-01
Chr02	irgsp1_rep	CDS	14532792	14532866	.	-	0	Parent=Os02t0448400-01
Chr02	irgsp1_rep	CDS	14532373	14532449	.	-	0	Parent=Os02t0448400-01
Chr02	irgsp1_rep	CDS	14532035	14532281	.	-	1	Parent=Os02t0448400-01
Chr02	irgsp1_rep	CDS	14531601	14531954	.	-	0	Parent=Os02t0448400-01
Chr02	irgsp1_rep	CDS	14531337	14531465	.	-	0	Parent=Os02t0448400-01
Chr02	irgsp1_rep	CDS	14529894	14530022	.	-	0	Parent=Os02t0448400-01
Chr02	irgsp1_rep	three_prime_UTR	14529681	14529893	.	-	.	Parent=Os02t0448400-01
Chr02	irgsp1_rep	mRNA	14529889	14537293	.	+	.	ID=Os02t0448500-00;Name=Os02t0448500-00;Locus_id=Os02g0448500;Note=Hypothetical protein.;Transcript_evidence=tplb0031a09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0448500-00
Chr02	irgsp1_rep	five_prime_UTR	14529889	14530024	.	+	.	Parent=Os02t0448500-00
Chr02	irgsp1_rep	five_prime_UTR	14531334	14531342	.	+	.	Parent=Os02t0448500-00
Chr02	irgsp1_rep	CDS	14531343	14531462	.	+	0	Parent=Os02t0448500-00
Chr02	irgsp1_rep	CDS	14531598	14531870	.	+	0	Parent=Os02t0448500-00
Chr02	irgsp1_rep	three_prime_UTR	14531871	14531972	.	+	.	Parent=Os02t0448500-00
Chr02	irgsp1_rep	three_prime_UTR	14532055	14532276	.	+	.	Parent=Os02t0448500-00
Chr02	irgsp1_rep	three_prime_UTR	14532363	14532466	.	+	.	Parent=Os02t0448500-00
Chr02	irgsp1_rep	three_prime_UTR	14532810	14532862	.	+	.	Parent=Os02t0448500-00
Chr02	irgsp1_rep	three_prime_UTR	14532932	14533038	.	+	.	Parent=Os02t0448500-00
Chr02	irgsp1_rep	three_prime_UTR	14533182	14533286	.	+	.	Parent=Os02t0448500-00
Chr02	irgsp1_rep	three_prime_UTR	14535624	14535792	.	+	.	Parent=Os02t0448500-00
Chr02	irgsp1_rep	three_prime_UTR	14535982	14536090	.	+	.	Parent=Os02t0448500-00
Chr02	irgsp1_rep	three_prime_UTR	14537165	14537293	.	+	.	Parent=Os02t0448500-00
Chr02	irgsp1_rep	mRNA	14557291	14559122	.	+	.	ID=Os02t0448600-01;Name=Os02t0448600-01;Locus_id=Os02g0448600;Note=Conserved hypothetical protein.;Transcript_evidence=AK108038 (DDBJ%2C Best hit);ORF_evidence=Q6ETC2 (UniProt);NIAS_FLcDNA=002-137-C11;Expression=AK108038;TENOR=Os02t0448600-01;KEGG=Os02t0448600-01
Chr02	irgsp1_rep	CDS	14557291	14557602	.	+	0	Parent=Os02t0448600-01
Chr02	irgsp1_rep	CDS	14557678	14557873	.	+	0	Parent=Os02t0448600-01
Chr02	irgsp1_rep	CDS	14558537	14558799	.	+	2	Parent=Os02t0448600-01
Chr02	irgsp1_rep	three_prime_UTR	14558800	14559122	.	+	.	Parent=Os02t0448600-01
Chr02	irgsp1_rep	mRNA	14681077	14684806	.	+	.	ID=Os02t0450000-01;Name=Os02t0450000-01;Locus_id=Os02g0450000;RAP-DB Gene Symbol Synonym(s)=TAC4;RAP-DB Gene Name Synonym(s)=Tiller Angle Control 4;Note="Plant-specific%2C highly conserved nuclear protein"%2C Regulation of tiller angle;Transcript_evidence=AK122096;ORF_evidence=Q6EQZ3;InterPro=Ribonuclease H-like superfamily (IPR012337);NIAS_FLcDNA=J033125D04;Manual Curation=July 7%2C 2020;Literature_PMID=32628357;Expression=AK122096;TENOR=Os02t0450000-01;KEGG=Os02t0450000-01;Subcellular location=nucleus (GO:0005634)
Chr02	irgsp1_rep	five_prime_UTR	14681077	14681980	.	+	.	Parent=Os02t0450000-01
Chr02	irgsp1_rep	CDS	14681981	14684413	.	+	0	Parent=Os02t0450000-01
Chr02	irgsp1_rep	three_prime_UTR	14684414	14684806	.	+	.	Parent=Os02t0450000-01
Chr02	irgsp1_rep	mRNA	14682426	14684806	.	+	.	ID=Os02t0450000-02;Name=Os02t0450000-02;Locus_id=Os02g0450000;CGSNL Gene Symbol=TAC4;CGSNL Gene Name=TILLER ANGLE CONTROL 4;Oryzabase Gene Symbol Synonym(s)=OsTAC4;Oryzabase Gene Name Synonym(s)=Tiller Angle Control 4;Note=Similar to OSIGBa0107A02.7 protein.;Transcript_evidence=AK106956 (DDBJ%2C Best hit);ORF_evidence=Q01MG9 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Ribonuclease H-like (IPR012337);NIAS_FLcDNA=002-119-E09;Oryzabase=23740;Expression=AK106956;TENOR=Os02t0450000-02;KEGG=Os02t0450000-02
Chr02	irgsp1_rep	five_prime_UTR	14682426	14682427	.	+	.	Parent=Os02t0450000-02
Chr02	irgsp1_rep	CDS	14682428	14684413	.	+	0	Parent=Os02t0450000-02
Chr02	irgsp1_rep	three_prime_UTR	14684414	14684806	.	+	.	Parent=Os02t0450000-02
Chr02	irgsp1_rep	mRNA	14831952	14835986	.	-	.	ID=Os02t0451501-00;Name=Os02t0451501-00;Locus_id=Os02g0451501;Note=Conserved hypothetical protein.;Transcript_evidence=AK242320 (DDBJ%2C Secondary hit);ORF_evidence=NP_001172344.1 (RefSeq);TENOR=Os02t0451501-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	14835907	14835986	.	-	.	Parent=Os02t0451501-00
Chr02	irgsp1_rep	CDS	14835543	14835906	.	-	0	Parent=Os02t0451501-00
Chr02	irgsp1_rep	CDS	14835352	14835465	.	-	2	Parent=Os02t0451501-00
Chr02	irgsp1_rep	CDS	14833620	14833642	.	-	2	Parent=Os02t0451501-00
Chr02	irgsp1_rep	three_prime_UTR	14833586	14833619	.	-	.	Parent=Os02t0451501-00
Chr02	irgsp1_rep	three_prime_UTR	14831952	14832248	.	-	.	Parent=Os02t0451501-00
Chr02	irgsp1_rep	mRNA	14865175	14866362	.	+	.	ID=Os02t0451900-01;Name=Os02t0451900-01;Locus_id=Os02g0451900;Note=Conserved hypothetical protein.;Transcript_evidence=AK061194 (DDBJ%2C Best hit);ORF_evidence=NP_001061479.2 (RefSeq);NIAS_FLcDNA=006-209-G05;Expression=AK061194;TENOR=Os02t0451900-01;KEGG=Os02t0451900-01
Chr02	irgsp1_rep	five_prime_UTR	14865175	14865175	.	+	.	Parent=Os02t0451900-01
Chr02	irgsp1_rep	CDS	14865176	14865397	.	+	0	Parent=Os02t0451900-01
Chr02	irgsp1_rep	three_prime_UTR	14865398	14866362	.	+	.	Parent=Os02t0451900-01
Chr02	irgsp1_rep	mRNA	14868939	14871305	.	+	.	ID=Os02t0452000-01;Name=Os02t0452000-01;Locus_id=Os02g0452000;Note=Non-protein coding transcript.;Transcript_evidence=AK063452 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-115-G03;TENOR=Os02t0452000-01
Chr02	irgsp1_rep	exon	14868939	14871305	.	+	.	Parent=Os02t0452000-01
Chr02	irgsp1_rep	mRNA	14942625	14962036	.	-	.	ID=Os02t0452500-01;Name=Os02t0452500-01;Locus_id=Os02g0452500;Note=Similar to SNARE-interacting protein KEULE.;Transcript_evidence=AK111848 (DDBJ%2C Best hit);ORF_evidence=NP_001146894.1 (RefSeq);GO=Biological Process: vesicle docking involved in exocytosis (GO:0006904),Biological Process: vesicle-mediated transport (GO:0016192);InterPro=Sec1-like protein (IPR001619);NIAS_FLcDNA=J023148D21;TENOR=Os02t0452500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	14961799	14962036	.	-	.	Parent=Os02t0452500-01
Chr02	irgsp1_rep	CDS	14961729	14961798	.	-	0	Parent=Os02t0452500-01
Chr02	irgsp1_rep	CDS	14960783	14960838	.	-	2	Parent=Os02t0452500-01
Chr02	irgsp1_rep	CDS	14959483	14959564	.	-	0	Parent=Os02t0452500-01
Chr02	irgsp1_rep	CDS	14958843	14958921	.	-	2	Parent=Os02t0452500-01
Chr02	irgsp1_rep	CDS	14956148	14956208	.	-	1	Parent=Os02t0452500-01
Chr02	irgsp1_rep	three_prime_UTR	14955825	14956147	.	-	.	Parent=Os02t0452500-01
Chr02	irgsp1_rep	three_prime_UTR	14954409	14954537	.	-	.	Parent=Os02t0452500-01
Chr02	irgsp1_rep	three_prime_UTR	14952317	14952508	.	-	.	Parent=Os02t0452500-01
Chr02	irgsp1_rep	three_prime_UTR	14952128	14952211	.	-	.	Parent=Os02t0452500-01
Chr02	irgsp1_rep	three_prime_UTR	14951932	14952030	.	-	.	Parent=Os02t0452500-01
Chr02	irgsp1_rep	three_prime_UTR	14951783	14951856	.	-	.	Parent=Os02t0452500-01
Chr02	irgsp1_rep	three_prime_UTR	14950803	14950899	.	-	.	Parent=Os02t0452500-01
Chr02	irgsp1_rep	three_prime_UTR	14946825	14946943	.	-	.	Parent=Os02t0452500-01
Chr02	irgsp1_rep	three_prime_UTR	14946623	14946718	.	-	.	Parent=Os02t0452500-01
Chr02	irgsp1_rep	three_prime_UTR	14945753	14945869	.	-	.	Parent=Os02t0452500-01
Chr02	irgsp1_rep	three_prime_UTR	14945579	14945656	.	-	.	Parent=Os02t0452500-01
Chr02	irgsp1_rep	three_prime_UTR	14944171	14944373	.	-	.	Parent=Os02t0452500-01
Chr02	irgsp1_rep	three_prime_UTR	14943329	14943419	.	-	.	Parent=Os02t0452500-01
Chr02	irgsp1_rep	three_prime_UTR	14943075	14943164	.	-	.	Parent=Os02t0452500-01
Chr02	irgsp1_rep	three_prime_UTR	14942625	14942995	.	-	.	Parent=Os02t0452500-01
Chr02	irgsp1_rep	mRNA	14942705	14961844	.	+	.	ID=Os02t0452550-00;Name=Os02t0452550-00;Locus_id=Os02g0452550;Note=Non-protein coding transcript.;Transcript_evidence=tplb0032b21 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os02t0452550-00
Chr02	irgsp1_rep	exon	14942705	14942991	.	+	.	Parent=Os02t0452550-00
Chr02	irgsp1_rep	exon	14943068	14943149	.	+	.	Parent=Os02t0452550-00
Chr02	irgsp1_rep	exon	14943309	14943440	.	+	.	Parent=Os02t0452550-00
Chr02	irgsp1_rep	exon	14944192	14944384	.	+	.	Parent=Os02t0452550-00
Chr02	irgsp1_rep	exon	14945590	14945643	.	+	.	Parent=Os02t0452550-00
Chr02	irgsp1_rep	exon	14945738	14945852	.	+	.	Parent=Os02t0452550-00
Chr02	irgsp1_rep	exon	14946605	14946700	.	+	.	Parent=Os02t0452550-00
Chr02	irgsp1_rep	exon	14946806	14946964	.	+	.	Parent=Os02t0452550-00
Chr02	irgsp1_rep	exon	14950817	14950896	.	+	.	Parent=Os02t0452550-00
Chr02	irgsp1_rep	exon	14951781	14951843	.	+	.	Parent=Os02t0452550-00
Chr02	irgsp1_rep	exon	14951920	14952028	.	+	.	Parent=Os02t0452550-00
Chr02	irgsp1_rep	exon	14952126	14952204	.	+	.	Parent=Os02t0452550-00
Chr02	irgsp1_rep	exon	14952300	14952490	.	+	.	Parent=Os02t0452550-00
Chr02	irgsp1_rep	exon	14954395	14954563	.	+	.	Parent=Os02t0452550-00
Chr02	irgsp1_rep	exon	14955961	14956086	.	+	.	Parent=Os02t0452550-00
Chr02	irgsp1_rep	exon	14958822	14958921	.	+	.	Parent=Os02t0452550-00
Chr02	irgsp1_rep	exon	14959483	14959545	.	+	.	Parent=Os02t0452550-00
Chr02	irgsp1_rep	exon	14960765	14960836	.	+	.	Parent=Os02t0452550-00
Chr02	irgsp1_rep	exon	14961727	14961844	.	+	.	Parent=Os02t0452550-00
Chr02	irgsp1_rep	mRNA	14946950	14947603	.	-	.	ID=Os02t0452601-00;Name=Os02t0452601-00;Locus_id=Os02g0452601;Note=Non-protein coding transcript.;Transcript_evidence=CT835370 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os02t0452601-00
Chr02	irgsp1_rep	exon	14946950	14947603	.	-	.	Parent=Os02t0452601-00
Chr02	irgsp1_rep	mRNA	14962608	14963250	.	-	.	ID=Os02t0452700-01;Name=Os02t0452700-01;Locus_id=Os02g0452700;Note=Hypothetical protein.;Transcript_evidence=AK108220 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-140-E09;Expression=AK108220;TENOR=Os02t0452700-01;KEGG=Os02t0452700-01
Chr02	irgsp1_rep	five_prime_UTR	14963237	14963250	.	-	.	Parent=Os02t0452700-01
Chr02	irgsp1_rep	CDS	14962874	14963236	.	-	0	Parent=Os02t0452700-01
Chr02	irgsp1_rep	three_prime_UTR	14962608	14962873	.	-	.	Parent=Os02t0452700-01
Chr02	irgsp1_rep	mRNA	14962136	14962676	.	-	.	ID=Os02t0452700-02;Name=Os02t0452700-02;Locus_id=Os02g0452700;Note=Non-protein coding transcript.;Transcript_evidence=AK063107 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-111-D03;TENOR=Os02t0452700-02
Chr02	irgsp1_rep	exon	14962136	14962676	.	-	.	Parent=Os02t0452700-02
Chr02	irgsp1_rep	mRNA	14970159	14973551	.	+	.	ID=Os02t0453000-01;Name=Os02t0453000-01;Locus_id=Os02g0453000;Note=Non-protein coding transcript.;Transcript_evidence=AK064422 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-110-B12;TENOR=Os02t0453000-01
Chr02	irgsp1_rep	exon	14970159	14970374	.	+	.	Parent=Os02t0453000-01
Chr02	irgsp1_rep	exon	14971996	14973122	.	+	.	Parent=Os02t0453000-01
Chr02	irgsp1_rep	exon	14973232	14973551	.	+	.	Parent=Os02t0453000-01
Chr02	irgsp1_rep	mRNA	14973848	14974598	.	+	.	ID=Os02t0453100-01;Name=Os02t0453100-01;Locus_id=Os02g0453100;Note=Conserved hypothetical protein.;Transcript_evidence=AK119952 (DDBJ%2C Best hit);ORF_evidence=B9EZS9 (UniProt);NIAS_FLcDNA=002-184-C06;Expression=AK119952;TENOR=Os02t0453100-01;KEGG=Os02t0453100-01
Chr02	irgsp1_rep	five_prime_UTR	14973848	14973901	.	+	.	Parent=Os02t0453100-01
Chr02	irgsp1_rep	CDS	14973902	14974423	.	+	0	Parent=Os02t0453100-01
Chr02	irgsp1_rep	three_prime_UTR	14974424	14974598	.	+	.	Parent=Os02t0453100-01
Chr02	irgsp1_rep	mRNA	14981865	14982717	.	-	.	ID=Os02t0453300-01;Name=Os02t0453300-01;Locus_id=Os02g0453300;Note=Hypothetical protein.;Transcript_evidence=AK071220 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023083M17;TENOR=Os02t0453300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	14982716	14982717	.	-	.	Parent=Os02t0453300-01
Chr02	irgsp1_rep	CDS	14982552	14982715	.	-	0	Parent=Os02t0453300-01
Chr02	irgsp1_rep	CDS	14982315	14982507	.	-	1	Parent=Os02t0453300-01
Chr02	irgsp1_rep	three_prime_UTR	14981865	14982314	.	-	.	Parent=Os02t0453300-01
Chr02	irgsp1_rep	mRNA	14979099	14982717	.	-	.	ID=Os02t0453300-02;Name=Os02t0453300-02;Locus_id=Os02g0453300;Note=Hypothetical protein.;Transcript_evidence=AK109380 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=006-210-D12;TENOR=Os02t0453300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	14982716	14982717	.	-	.	Parent=Os02t0453300-02
Chr02	irgsp1_rep	CDS	14982371	14982715	.	-	0	Parent=Os02t0453300-02
Chr02	irgsp1_rep	three_prime_UTR	14981667	14982370	.	-	.	Parent=Os02t0453300-02
Chr02	irgsp1_rep	three_prime_UTR	14981475	14981518	.	-	.	Parent=Os02t0453300-02
Chr02	irgsp1_rep	three_prime_UTR	14979760	14979784	.	-	.	Parent=Os02t0453300-02
Chr02	irgsp1_rep	three_prime_UTR	14979606	14979665	.	-	.	Parent=Os02t0453300-02
Chr02	irgsp1_rep	three_prime_UTR	14979099	14979286	.	-	.	Parent=Os02t0453300-02
Chr02	irgsp1_rep	mRNA	14984016	14984852	.	-	.	ID=Os02t0453400-00;Name=Os02t0453400-00;Locus_id=Os02g0453400;Note=Similar to H0818E04.10 protein.;Transcript_evidence=BT066484 (DDBJ);ORF_evidence=Q01J68 (UniProt);GO=Biological Process: cell wall biogenesis (GO:0042546),Cellular Component: membrane (GO:0016020),Molecular Function: galactoside 2-alpha-L-fucosyltransferase activity (GO:0008107);InterPro=Xyloglucan fucosyltransferase (IPR004938);TENOR=Os02t0453400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	14984370	14984852	.	-	0	Parent=Os02t0453400-00
Chr02	irgsp1_rep	three_prime_UTR	14984016	14984369	.	-	.	Parent=Os02t0453400-00
Chr02	irgsp1_rep	mRNA	14985357	14986292	.	+	.	ID=Os02t0453500-01;Name=Os02t0453500-01;Locus_id=Os02g0453500;Note=Similar to mitochondrial glycoprotein.;Transcript_evidence=AK063216 (DDBJ%2C Best hit);ORF_evidence=NP_001150307.1 (RefSeq);NIAS_FLcDNA=001-112-D12;TENOR=Os02t0453500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	14985357	14985357	.	+	.	Parent=Os02t0453500-01
Chr02	irgsp1_rep	CDS	14985358	14985660	.	+	0	Parent=Os02t0453500-01
Chr02	irgsp1_rep	CDS	14985735	14985749	.	+	0	Parent=Os02t0453500-01
Chr02	irgsp1_rep	three_prime_UTR	14985750	14986292	.	+	.	Parent=Os02t0453500-01
Chr02	irgsp1_rep	mRNA	14991687	14993674	.	-	.	ID=Os02t0453600-01;Name=Os02t0453600-01;Locus_id=Os02g0453600;CGSNL Gene Symbol=GLUC;CGSNL Gene Name=GLUTELIN C;Oryzabase Gene Symbol Synonym(s)=GluC%2C OsEnS-36%2C EnS-36%2C GLU2.2%2C GluC-1;Oryzabase Gene Name Synonym(s)=Glutelin type-C%2C endosperm-specific gene 36%2C gluten 2.2;Note=Similar to Glutelin.;Transcript_evidence=AK064478 (DDBJ%2C Best hit);ORF_evidence=Q9ZWJ8 (UniProt);GO=Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710);NIAS_FLcDNA=002-111-A06;Oryzabase=10214;Expression=AK064478;TENOR=Os02t0453600-01;KEGG=Os02t0453600-01
Chr02	irgsp1_rep	five_prime_UTR	14993662	14993674	.	-	.	Parent=Os02t0453600-01
Chr02	irgsp1_rep	CDS	14993322	14993661	.	-	0	Parent=Os02t0453600-01
Chr02	irgsp1_rep	CDS	14992781	14993202	.	-	2	Parent=Os02t0453600-01
Chr02	irgsp1_rep	three_prime_UTR	14992306	14992780	.	-	.	Parent=Os02t0453600-01
Chr02	irgsp1_rep	three_prime_UTR	14991687	14992207	.	-	.	Parent=Os02t0453600-01
Chr02	irgsp1_rep	mRNA	15000091	15003092	.	-	.	ID=Os02t0453800-01;Name=Os02t0453800-01;Locus_id=Os02g0453800;Note=Conserved hypothetical protein.;Transcript_evidence=AK069657 (DDBJ%2C Best hit);ORF_evidence=B9EZT4 (UniProt);NIAS_FLcDNA=J023031K21;TENOR=Os02t0453800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	15001696	15003092	.	-	.	Parent=Os02t0453800-01
Chr02	irgsp1_rep	CDS	15001357	15001695	.	-	0	Parent=Os02t0453800-01
Chr02	irgsp1_rep	three_prime_UTR	15000091	15001356	.	-	.	Parent=Os02t0453800-01
Chr02	irgsp1_rep	mRNA	15033424	15034425	.	-	.	ID=Os02t0454300-01;Name=Os02t0454300-01;Locus_id=Os02g0454300;Note=Conserved hypothetical protein.;Transcript_evidence=AK108068 (DDBJ%2C Best hit);ORF_evidence=NP_001057610.2 (RefSeq);NIAS_FLcDNA=002-138-C03;TENOR=Os02t0454300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	15034047	15034425	.	-	.	Parent=Os02t0454300-01
Chr02	irgsp1_rep	five_prime_UTR	15033857	15033969	.	-	.	Parent=Os02t0454300-01
Chr02	irgsp1_rep	five_prime_UTR	15033770	15033774	.	-	.	Parent=Os02t0454300-01
Chr02	irgsp1_rep	CDS	15033602	15033769	.	-	0	Parent=Os02t0454300-01
Chr02	irgsp1_rep	three_prime_UTR	15033424	15033601	.	-	.	Parent=Os02t0454300-01
Chr02	irgsp1_rep	mRNA	15044721	15046322	.	+	.	ID=Os02t0454500-01;Name=Os02t0454500-01;Locus_id=Os02g0454500;Note=Membrane bound O-acyl transferase%2C MBOAT family protein.;Transcript_evidence=AK064156 (DDBJ%2C Best hit);ORF_evidence=NP_001147171.1 (RefSeq);InterPro=Membrane bound O-acyl transferase%2C MBOAT (IPR004299),Wax synthase (IPR017088);NIAS_FLcDNA=002-103-F04;Expression=AK064156;TENOR=Os02t0454500-01;KEGG=Os02t0454500-01
Chr02	irgsp1_rep	five_prime_UTR	15044721	15044755	.	+	.	Parent=Os02t0454500-01
Chr02	irgsp1_rep	CDS	15044756	15045814	.	+	0	Parent=Os02t0454500-01
Chr02	irgsp1_rep	three_prime_UTR	15045815	15046322	.	+	.	Parent=Os02t0454500-01
Chr02	irgsp1_rep	mRNA	15058597	15059599	.	+	.	ID=Os02t0454700-00;Name=Os02t0454700-00;Locus_id=Os02g0454700;Note=Hypothetical conserved gene.;Transcript_evidence=BT086502 (DDBJ);ORF_evidence=B6TXA3 (UniProt);InterPro=Membrane bound O-acyl transferase%2C MBOAT (IPR004299);TENOR=Os02t0454700-00;KEGG=Os02t0454700-00
Chr02	irgsp1_rep	five_prime_UTR	15058597	15058636	.	+	.	Parent=Os02t0454700-00
Chr02	irgsp1_rep	CDS	15058637	15059599	.	+	0	Parent=Os02t0454700-00
Chr02	irgsp1_rep	mRNA	15082659	15083129	.	+	.	ID=Os02t0454950-00;Name=Os02t0454950-00;Locus_id=Os02g0454950;Note=Hypothetical gene.;Transcript_evidence=CT835472 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os02t0454950-00;KEGG=Os02t0454950-00
Chr02	irgsp1_rep	five_prime_UTR	15082659	15082700	.	+	.	Parent=Os02t0454950-00
Chr02	irgsp1_rep	CDS	15082701	15082940	.	+	0	Parent=Os02t0454950-00
Chr02	irgsp1_rep	three_prime_UTR	15082941	15083129	.	+	.	Parent=Os02t0454950-00
Chr02	irgsp1_rep	mRNA	15106328	15107381	.	+	.	ID=Os02t0455400-00;Name=Os02t0455400-00;Locus_id=Os02g0455400;Note=Hypothetical conserved gene.;Transcript_evidence=CT835405 (DDBJ%2C Best hit);ORF_evidence=Q6K3B3 (UniProt);InterPro=Protein of unknown function DUF1442 (IPR009902);TENOR=Os02t0455400-00;KEGG=Os02t0455400-00
Chr02	irgsp1_rep	five_prime_UTR	15106328	15106328	.	+	.	Parent=Os02t0455400-00
Chr02	irgsp1_rep	CDS	15106329	15107135	.	+	0	Parent=Os02t0455400-00
Chr02	irgsp1_rep	three_prime_UTR	15107136	15107381	.	+	.	Parent=Os02t0455400-00
Chr02	irgsp1_rep	mRNA	15130358	15131464	.	+	.	ID=Os02t0455800-01;Name=Os02t0455800-01;Locus_id=Os02g0455800;Note=Transcriptional factor B3 family protein.;Transcript_evidence=AK242688 (DDBJ%2C Best hit);ORF_evidence=NP_001172942.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=J090034E16;TENOR=Os02t0455800-01;KEGG=Os02t0455800-01
Chr02	irgsp1_rep	five_prime_UTR	15130358	15130416	.	+	.	Parent=Os02t0455800-01
Chr02	irgsp1_rep	CDS	15130417	15131220	.	+	0	Parent=Os02t0455800-01
Chr02	irgsp1_rep	three_prime_UTR	15131221	15131464	.	+	.	Parent=Os02t0455800-01
Chr02	irgsp1_rep	mRNA	15134001	15134819	.	+	.	ID=Os02t0455900-00;Name=Os02t0455900-00;Locus_id=Os02g0455900;Note=Putative B3 domain-containing protein Os02g0455900.;Transcript_evidence=Q6K3B1 (UniProt);ORF_evidence=Q6K3B1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);Oryzabase=22357;TENOR=Os02t0455900-00
Chr02	irgsp1_rep	CDS	15134001	15134819	.	+	0	Parent=Os02t0455900-00
Chr02	irgsp1_rep	mRNA	15141481	15143539	.	-	.	ID=Os02t0456000-01;Name=Os02t0456000-01;Locus_id=Os02g0456000;Oryzabase Gene Symbol Synonym(s)=EIP4;Oryzabase Gene Name Synonym(s)=EBR1-interacting protein 4;Note=COG4 transport domain containing protein.;Transcript_evidence=AK119496 (DDBJ%2C Best hit);ORF_evidence=Q2HTC4 (UniProt);InterPro=Conserved oligomeric Golgi complex%2C subunit 4 (IPR013167);NIAS_FLcDNA=001-134-E02;Oryzabase=21992;Expression=AK119496;TENOR=Os02t0456000-01;KEGG=Os02t0456000-01
Chr02	irgsp1_rep	five_prime_UTR	15143483	15143539	.	-	.	Parent=Os02t0456000-01
Chr02	irgsp1_rep	CDS	15141797	15143482	.	-	0	Parent=Os02t0456000-01
Chr02	irgsp1_rep	three_prime_UTR	15141481	15141796	.	-	.	Parent=Os02t0456000-01
Chr02	irgsp1_rep	mRNA	15151364	15153319	.	+	.	ID=Os02t0456100-01;Name=Os02t0456100-01;Locus_id=Os02g0456100;Oryzabase Gene Name Synonym(s)=glutelin;Note=Similar to Glutelin.;Transcript_evidence=AK242312 (DDBJ%2C Best hit);ORF_evidence=Q9ZWJ8 (UniProt);GO=Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710);NIAS_FLcDNA=J075195B06;Oryzabase=22725;TENOR=Os02t0456100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	15151364	15151394	.	+	.	Parent=Os02t0456100-01
Chr02	irgsp1_rep	CDS	15151395	15151734	.	+	0	Parent=Os02t0456100-01
Chr02	irgsp1_rep	CDS	15151848	15152101	.	+	2	Parent=Os02t0456100-01
Chr02	irgsp1_rep	CDS	15152219	15152641	.	+	0	Parent=Os02t0456100-01
Chr02	irgsp1_rep	three_prime_UTR	15152642	15152698	.	+	.	Parent=Os02t0456100-01
Chr02	irgsp1_rep	three_prime_UTR	15152796	15153319	.	+	.	Parent=Os02t0456100-01
Chr02	irgsp1_rep	mRNA	15153796	15172431	.	-	.	ID=Os02t0456500-01;Name=Os02t0456500-01;Locus_id=Os02g0456500;Note=Similar to GTP-binding protein.;Transcript_evidence=AK242942 (DDBJ%2C Best hit);ORF_evidence=A4ZCD1 (UniProt);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Protein synthesis factor%2C GTP-binding (IPR000795);NIAS_FLcDNA=J090087J09;TENOR=Os02t0456500-01;KEGG=Os02t0456500-01
Chr02	irgsp1_rep	five_prime_UTR	15172371	15172431	.	-	.	Parent=Os02t0456500-01
Chr02	irgsp1_rep	CDS	15172190	15172370	.	-	0	Parent=Os02t0456500-01
Chr02	irgsp1_rep	CDS	15171131	15171181	.	-	2	Parent=Os02t0456500-01
Chr02	irgsp1_rep	CDS	15170613	15170699	.	-	2	Parent=Os02t0456500-01
Chr02	irgsp1_rep	CDS	15168312	15168423	.	-	2	Parent=Os02t0456500-01
Chr02	irgsp1_rep	CDS	15167271	15167316	.	-	1	Parent=Os02t0456500-01
Chr02	irgsp1_rep	CDS	15160064	15160135	.	-	0	Parent=Os02t0456500-01
Chr02	irgsp1_rep	CDS	15159437	15159499	.	-	0	Parent=Os02t0456500-01
Chr02	irgsp1_rep	CDS	15159185	15159352	.	-	0	Parent=Os02t0456500-01
Chr02	irgsp1_rep	three_prime_UTR	15157860	15159184	.	-	.	Parent=Os02t0456500-01
Chr02	irgsp1_rep	three_prime_UTR	15157532	15157637	.	-	.	Parent=Os02t0456500-01
Chr02	irgsp1_rep	three_prime_UTR	15157298	15157433	.	-	.	Parent=Os02t0456500-01
Chr02	irgsp1_rep	three_prime_UTR	15156453	15156517	.	-	.	Parent=Os02t0456500-01
Chr02	irgsp1_rep	three_prime_UTR	15155249	15155434	.	-	.	Parent=Os02t0456500-01
Chr02	irgsp1_rep	three_prime_UTR	15155067	15155140	.	-	.	Parent=Os02t0456500-01
Chr02	irgsp1_rep	three_prime_UTR	15154356	15154439	.	-	.	Parent=Os02t0456500-01
Chr02	irgsp1_rep	three_prime_UTR	15153796	15154037	.	-	.	Parent=Os02t0456500-01
Chr02	irgsp1_rep	mRNA	15192260	15196610	.	+	.	ID=Os02t0456800-01;Name=Os02t0456800-01;Locus_id=Os02g0456800;Note=Similar to Pollen signalling protein with adenylyl cyclase activity (Fragment).;Transcript_evidence=AK066598 (DDBJ%2C Best hit);ORF_evidence=Q93Y95 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013072E17;Oryzabase=14948;Expression=AK066598;TENOR=Os02t0456800-01;KEGG=Os02t0456800-01
Chr02	irgsp1_rep	five_prime_UTR	15192260	15192630	.	+	.	Parent=Os02t0456800-01
Chr02	irgsp1_rep	five_prime_UTR	15193044	15193086	.	+	.	Parent=Os02t0456800-01
Chr02	irgsp1_rep	CDS	15193087	15196356	.	+	0	Parent=Os02t0456800-01
Chr02	irgsp1_rep	three_prime_UTR	15196357	15196610	.	+	.	Parent=Os02t0456800-01
Chr02	irgsp1_rep	mRNA	15203967	15205042	.	-	.	ID=Os02t0457100-00;Name=Os02t0457100-00;Locus_id=Os02g0457100;Note=Similar to Histone H3.;Transcript_evidence=DQ245222 (DDBJ);ORF_evidence=A3A6I6 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H3 (IPR000164),Histone core (IPR007125),Histone-fold (IPR009072);TENOR=Os02t0457100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	15204933	15205042	.	-	0	Parent=Os02t0457100-00
Chr02	irgsp1_rep	CDS	15204723	15204800	.	-	1	Parent=Os02t0457100-00
Chr02	irgsp1_rep	CDS	15204376	15204466	.	-	1	Parent=Os02t0457100-00
Chr02	irgsp1_rep	CDS	15204108	15204278	.	-	0	Parent=Os02t0457100-00
Chr02	irgsp1_rep	three_prime_UTR	15203967	15204107	.	-	.	Parent=Os02t0457100-00
Chr02	irgsp1_rep	mRNA	15204072	15204471	.	+	.	ID=Os02t0457175-00;Name=Os02t0457175-00;Locus_id=Os02g0457175;Note=Hypothetical gene.;Transcript_evidence=BT018950 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0457175-00
Chr02	irgsp1_rep	five_prime_UTR	15204072	15204080	.	+	.	Parent=Os02t0457175-00
Chr02	irgsp1_rep	CDS	15204081	15204277	.	+	0	Parent=Os02t0457175-00
Chr02	irgsp1_rep	CDS	15204376	15204451	.	+	1	Parent=Os02t0457175-00
Chr02	irgsp1_rep	three_prime_UTR	15204452	15204471	.	+	.	Parent=Os02t0457175-00
Chr02	irgsp1_rep	mRNA	15206506	15207622	.	+	.	ID=Os02t0457250-00;Name=Os02t0457250-00;Locus_id=Os02g0457250;Note=Hypothetical gene.;Transcript_evidence=CT835466 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os02t0457250-00;KEGG=Os02t0457250-00
Chr02	irgsp1_rep	five_prime_UTR	15206506	15206573	.	+	.	Parent=Os02t0457250-00
Chr02	irgsp1_rep	CDS	15206574	15206867	.	+	0	Parent=Os02t0457250-00
Chr02	irgsp1_rep	three_prime_UTR	15206868	15206989	.	+	.	Parent=Os02t0457250-00
Chr02	irgsp1_rep	three_prime_UTR	15207315	15207622	.	+	.	Parent=Os02t0457250-00
Chr02	irgsp1_rep	mRNA	15225055	15226211	.	-	.	ID=Os02t0457300-00;Name=Os02t0457300-00;Locus_id=Os02g0457300;Note=Similar to Histone H3.;Transcript_evidence=FP101443 (DDBJ);ORF_evidence=B6UHK8 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H3 (IPR000164),Histone core (IPR007125),Histone-fold (IPR009072);TENOR=Os02t0457300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	15225930	15226211	.	-	0	Parent=Os02t0457300-00
Chr02	irgsp1_rep	CDS	15225729	15225808	.	-	0	Parent=Os02t0457300-00
Chr02	irgsp1_rep	CDS	15225407	15225497	.	-	1	Parent=Os02t0457300-00
Chr02	irgsp1_rep	CDS	15225140	15225310	.	-	0	Parent=Os02t0457300-00
Chr02	irgsp1_rep	three_prime_UTR	15225055	15225139	.	-	.	Parent=Os02t0457300-00
Chr02	irgsp1_rep	mRNA	15225146	15226012	.	+	.	ID=Os02t0457325-00;Name=Os02t0457325-00;Locus_id=Os02g0457325;Note=Hypothetical gene.;Transcript_evidence=BT018930 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0457325-00;KEGG=Os02t0457325-00
Chr02	irgsp1_rep	CDS	15225146	15225309	.	+	0	Parent=Os02t0457325-00
Chr02	irgsp1_rep	CDS	15225407	15225482	.	+	1	Parent=Os02t0457325-00
Chr02	irgsp1_rep	three_prime_UTR	15225483	15225502	.	+	.	Parent=Os02t0457325-00
Chr02	irgsp1_rep	three_prime_UTR	15225734	15225825	.	+	.	Parent=Os02t0457325-00
Chr02	irgsp1_rep	three_prime_UTR	15225959	15226012	.	+	.	Parent=Os02t0457325-00
Chr02	irgsp1_rep	mRNA	15233137	15238844	.	-	.	ID=Os02t0457500-01;Name=Os02t0457500-01;Locus_id=Os02g0457500;Note=Ankyrin repeat containing protein.;Transcript_evidence=AK101296 (DDBJ%2C Best hit);ORF_evidence=B9EZU0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J033033H23;Expression=AK101296;TENOR=Os02t0457500-01;KEGG=Os02t0457500-01
Chr02	irgsp1_rep	five_prime_UTR	15238706	15238844	.	-	.	Parent=Os02t0457500-01
Chr02	irgsp1_rep	CDS	15238358	15238705	.	-	0	Parent=Os02t0457500-01
Chr02	irgsp1_rep	CDS	15235714	15235989	.	-	0	Parent=Os02t0457500-01
Chr02	irgsp1_rep	CDS	15235473	15235610	.	-	0	Parent=Os02t0457500-01
Chr02	irgsp1_rep	CDS	15233446	15235011	.	-	0	Parent=Os02t0457500-01
Chr02	irgsp1_rep	three_prime_UTR	15233137	15233445	.	-	.	Parent=Os02t0457500-01
Chr02	irgsp1_rep	mRNA	15233548	15236984	.	+	.	ID=Os02t0457600-01;Name=Os02t0457600-01;Locus_id=Os02g0457600;Note=Hypothetical protein.;Transcript_evidence=AK106836 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-116-G07;Expression=AK106836;TENOR=Os02t0457600-01;KEGG=Os02t0457600-01
Chr02	irgsp1_rep	five_prime_UTR	15233548	15233614	.	+	.	Parent=Os02t0457600-01
Chr02	irgsp1_rep	CDS	15233615	15233974	.	+	0	Parent=Os02t0457600-01
Chr02	irgsp1_rep	three_prime_UTR	15233975	15234999	.	+	.	Parent=Os02t0457600-01
Chr02	irgsp1_rep	three_prime_UTR	15236398	15236984	.	+	.	Parent=Os02t0457600-01
Chr02	irgsp1_rep	mRNA	15263803	15283324	.	-	.	ID=Os02t0458100-01;Name=Os02t0458100-01;Locus_id=Os02g0458100;CGSNL Gene Symbol=CAD;CGSNL Gene Name=CINNAMOYL ALCOHOL DEHYDROGENASE;Oryzabase Gene Symbol Synonym(s)=OsCAD;Oryzabase Gene Name Synonym(s)=cinnamoyl alcohol dehydrogenase;Note=Similar to Sesquiterpene cyclase.;Transcript_evidence=AK070116 (DDBJ%2C Best hit);ORF_evidence=A0EVJ1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: lyase activity (GO:0016829);InterPro=Terpene synthase-like (IPR001906),Terpene synthase%2C metal-binding domain (IPR005630),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930),Terpenoid synthase (IPR008949);NIAS_FLcDNA=J023043P03;Oryzabase=23752;TENOR=Os02t0458100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	15283323	15283324	.	-	.	Parent=Os02t0458100-01
Chr02	irgsp1_rep	CDS	15283053	15283322	.	-	0	Parent=Os02t0458100-01
Chr02	irgsp1_rep	CDS	15282402	15282657	.	-	0	Parent=Os02t0458100-01
Chr02	irgsp1_rep	CDS	15281851	15282217	.	-	2	Parent=Os02t0458100-01
Chr02	irgsp1_rep	CDS	15281556	15281774	.	-	1	Parent=Os02t0458100-01
Chr02	irgsp1_rep	CDS	15275782	15275845	.	-	1	Parent=Os02t0458100-01
Chr02	irgsp1_rep	three_prime_UTR	15275761	15275781	.	-	.	Parent=Os02t0458100-01
Chr02	irgsp1_rep	three_prime_UTR	15264445	15264692	.	-	.	Parent=Os02t0458100-01
Chr02	irgsp1_rep	three_prime_UTR	15263803	15264278	.	-	.	Parent=Os02t0458100-01
Chr02	irgsp1_rep	mRNA	15310546	15324161	.	+	.	ID=Os02t0458900-00;Name=Os02t0458900-00;Locus_id=Os02g0458900;Note=Conserved hypothetical protein.;Transcript_evidence=BT041875 (DDBJ);ORF_evidence=Q6K3L1 (UniProt);TENOR=Os02t0458900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	15310546	15310978	.	+	0	Parent=Os02t0458900-00
Chr02	irgsp1_rep	CDS	15323321	15323803	.	+	2	Parent=Os02t0458900-00
Chr02	irgsp1_rep	CDS	15323935	15324131	.	+	2	Parent=Os02t0458900-00
Chr02	irgsp1_rep	three_prime_UTR	15324132	15324161	.	+	.	Parent=Os02t0458900-00
Chr02	irgsp1_rep	mRNA	15323327	15324125	.	-	.	ID=Os02t0458950-00;Name=Os02t0458950-00;Locus_id=Os02g0458950;Note=Hypothetical protein.;Transcript_evidence=tplb0026k01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0458950-00
Chr02	irgsp1_rep	CDS	15323902	15324125	.	-	0	Parent=Os02t0458950-00
Chr02	irgsp1_rep	CDS	15323685	15323769	.	-	1	Parent=Os02t0458950-00
Chr02	irgsp1_rep	three_prime_UTR	15323327	15323684	.	-	.	Parent=Os02t0458950-00
Chr02	irgsp1_rep	mRNA	15324744	15325572	.	-	.	ID=Os02t0459001-00;Name=Os02t0459001-00;Locus_id=Os02g0459001;Note=Conserved hypothetical protein.;Transcript_evidence=FP100341 (DDBJ);ORF_evidence=Q6K3L0 (UniProt);TENOR=Os02t0459001-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	15325560	15325572	.	-	.	Parent=Os02t0459001-00
Chr02	irgsp1_rep	CDS	15325290	15325559	.	-	0	Parent=Os02t0459001-00
Chr02	irgsp1_rep	three_prime_UTR	15325263	15325289	.	-	.	Parent=Os02t0459001-00
Chr02	irgsp1_rep	three_prime_UTR	15324744	15325118	.	-	.	Parent=Os02t0459001-00
Chr02	irgsp1_rep	mRNA	15347505	15348994	.	+	.	ID=Os02t0459150-00;Name=Os02t0459150-00;Locus_id=Os02g0459150;Note=Ribonuclease H-like domain containing protein.;Transcript_evidence=DQ115069 (DDBJ);ORF_evidence=NP_001060325.2 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Ribonuclease H-like (IPR012337);TENOR=Os02t0459150-00
Chr02	irgsp1_rep	five_prime_UTR	15347505	15347559	.	+	.	Parent=Os02t0459150-00
Chr02	irgsp1_rep	CDS	15347560	15347946	.	+	0	Parent=Os02t0459150-00
Chr02	irgsp1_rep	three_prime_UTR	15347947	15348994	.	+	.	Parent=Os02t0459150-00
Chr02	irgsp1_rep	mRNA	15357909	15358997	.	-	.	ID=Os02t0459300-00;Name=Os02t0459300-00;Locus_id=Os02g0459300;Note=Similar to tangled1.;Transcript_evidence=EU965595 (DDBJ);ORF_evidence=NP_001105636.1 (RefSeq);TENOR=Os02t0459300-00;KEGG=Os02t0459300-00
Chr02	irgsp1_rep	five_prime_UTR	15358992	15358997	.	-	.	Parent=Os02t0459300-00
Chr02	irgsp1_rep	CDS	15357909	15358991	.	-	0	Parent=Os02t0459300-00
Chr02	irgsp1_rep	mRNA	15360268	15360869	.	-	.	ID=Os02t0459400-01;Name=Os02t0459400-01;Locus_id=Os02g0459400;Note=Hypothetical protein.;Transcript_evidence=AK062336 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-101-E06;TENOR=Os02t0459400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	15360485	15360869	.	-	.	Parent=Os02t0459400-01
Chr02	irgsp1_rep	CDS	15360268	15360484	.	-	0	Parent=Os02t0459400-01
Chr02	irgsp1_rep	mRNA	15363372	15365512	.	+	.	ID=Os02t0459600-01;Name=Os02t0459600-01;Locus_id=Os02g0459600;RAP-DB Gene Symbol Synonym(s)=OsLecRK-S.7%2C OsDAF1;RAP-DB Gene Name Synonym(s)=Lectin receptor kinase S.7%2C DEFECTIVE INAPERTURE FORMATION1;Oryzabase Gene Name Synonym(s)=Extensin family protein;Note=Lectin receptor kinase%2C Regulation of pollen development%2C Regulation of pollen aperture formation;Transcript_evidence=BT068484 (maize);ORF_evidence=A0A0P0VIP0;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Concanavalin A-like lectin/glucanase domain superfamily (IPR013320),Protein kinase-like domain superfamily (IPR011009),Legume lectin domain (IPR001220),Protein kinase domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271);Manual Curation=April 20%2C 2020;Literature_PMID=32284546,31833176;Oryzabase=21944;TENOR=Os02t0459600-00;Subcellular location=plasma membrane (GO:0005886)
Chr02	irgsp1_rep	five_prime_UTR	15363372	15363380	.	+	.	Parent=Os02t0459600-01
Chr02	irgsp1_rep	CDS	15363381	15365468	.	+	0	Parent=Os02t0459600-01
Chr02	irgsp1_rep	three_prime_UTR	15365469	15365512	.	+	.	Parent=Os02t0459600-01
Chr02	irgsp1_rep	mRNA	15397508	15398605	.	-	.	ID=Os02t0460200-01;Name=Os02t0460200-01;Locus_id=Os02g0460200;CGSNL Gene Symbol=FPFL3;CGSNL Gene Name=FPF1-LIKE PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsFPFL3;Oryzabase Gene Name Synonym(s)=FPF1-like protein 3%2C FPF1-like 3%2C flowering-promoting factor 1-like 3;Note=Similar to OSIGBa0131F24.5 protein.;Transcript_evidence=AK065150 (DDBJ%2C Best hit);ORF_evidence=Q01MG4 (UniProt);NIAS_FLcDNA=J013002B08;Oryzabase=23446;Expression=AK065150;TENOR=Os02t0460200-01;KEGG=Os02t0460200-01
Chr02	irgsp1_rep	five_prime_UTR	15398412	15398605	.	-	.	Parent=Os02t0460200-01
Chr02	irgsp1_rep	CDS	15398043	15398411	.	-	0	Parent=Os02t0460200-01
Chr02	irgsp1_rep	three_prime_UTR	15397508	15398042	.	-	.	Parent=Os02t0460200-01
Chr02	irgsp1_rep	mRNA	15397485	15398565	.	-	.	ID=Os02t0460200-02;Name=Os02t0460200-02;Locus_id=Os02g0460200;CGSNL Gene Symbol=FPFL3;CGSNL Gene Name=FPF1-LIKE PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsFPFL3;Oryzabase Gene Name Synonym(s)=FPF1-like protein 3%2C FPF1-like 3%2C flowering-promoting factor 1-like 3;Note=Similar to OSIGBa0131F24.5 protein.;Transcript_evidence=AK060911 (DDBJ%2C Best hit),AK104536 (DDBJ%2C Best hit);ORF_evidence=Q01MG4 (UniProt);NIAS_FLcDNA=001-035-F11,006-304-F06;Oryzabase=23446;Expression=AK060911;TENOR=Os02t0460200-02;KEGG=Os02t0460200-02
Chr02	irgsp1_rep	five_prime_UTR	15398412	15398565	.	-	.	Parent=Os02t0460200-02
Chr02	irgsp1_rep	CDS	15398043	15398411	.	-	0	Parent=Os02t0460200-02
Chr02	irgsp1_rep	three_prime_UTR	15397485	15398042	.	-	.	Parent=Os02t0460200-02
Chr02	irgsp1_rep	mRNA	15413445	15414685	.	-	.	ID=Os02t0460600-01;Name=Os02t0460600-01;Locus_id=Os02g0460600;Note=Similar to OSIGBa0104J13.6 protein.;Transcript_evidence=AK288377 (DDBJ%2C Best hit);ORF_evidence=Q01LL9 (UniProt);NIAS_FLcDNA=J090026K06;TENOR=Os02t0460600-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	15414664	15414685	.	-	.	Parent=Os02t0460600-01
Chr02	irgsp1_rep	CDS	15414517	15414663	.	-	0	Parent=Os02t0460600-01
Chr02	irgsp1_rep	three_prime_UTR	15413445	15414516	.	-	.	Parent=Os02t0460600-01
Chr02	irgsp1_rep	mRNA	15436611	15437631	.	-	.	ID=Os02t0461000-01;Name=Os02t0461000-01;Locus_id=Os02g0461000;CGSNL Gene Symbol=FLA22;CGSNL Gene Name=FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 22;Oryzabase Gene Symbol Synonym(s)=OsFLA22;Oryzabase Gene Name Synonym(s)=fasciclin-like AGP 22%2C fasciclin-like arabinogalactan protein 22;Note=FAS1 domain domain containing protein.;Transcript_evidence=AK071402 (DDBJ%2C Best hit);ORF_evidence=B6TA75 (UniProt);InterPro=FAS1 domain (IPR000782);NIAS_FLcDNA=J023092G05;Oryzabase=11357;Expression=AK071402;TENOR=Os02t0461000-01;KEGG=Os02t0461000-01
Chr02	irgsp1_rep	five_prime_UTR	15437587	15437631	.	-	.	Parent=Os02t0461000-01
Chr02	irgsp1_rep	CDS	15436945	15437586	.	-	0	Parent=Os02t0461000-01
Chr02	irgsp1_rep	three_prime_UTR	15436611	15436944	.	-	.	Parent=Os02t0461000-01
Chr02	irgsp1_rep	mRNA	15441600	15446187	.	-	.	ID=Os02t0461100-01;Name=Os02t0461100-01;Locus_id=Os02g0461100;Note=Conserved hypothetical protein.;Transcript_evidence=AK121322 (DDBJ%2C Best hit);ORF_evidence=B9EZU6 (UniProt);NIAS_FLcDNA=J023114F09;TENOR=Os02t0461100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	15445907	15446187	.	-	.	Parent=Os02t0461100-01
Chr02	irgsp1_rep	CDS	15445753	15445906	.	-	0	Parent=Os02t0461100-01
Chr02	irgsp1_rep	CDS	15445431	15445484	.	-	2	Parent=Os02t0461100-01
Chr02	irgsp1_rep	CDS	15445217	15445302	.	-	2	Parent=Os02t0461100-01
Chr02	irgsp1_rep	three_prime_UTR	15441600	15445216	.	-	.	Parent=Os02t0461100-01
Chr02	irgsp1_rep	mRNA	15447228	15451384	.	+	.	ID=Os02t0461200-01;Name=Os02t0461200-01;Locus_id=Os02g0461200;Note=Integrase/recombinase%2C N-terminal domain containing protein.;Transcript_evidence=AK063459 (DDBJ%2C Best hit);ORF_evidence=B9EZU7 (UniProt);InterPro=Integrase/recombinase%2C N-terminal (IPR023109);NIAS_FLcDNA=001-115-G10;Expression=AK063459;TENOR=Os02t0461200-01;KEGG=Os02t0461200-01
Chr02	irgsp1_rep	five_prime_UTR	15447228	15447265	.	+	.	Parent=Os02t0461200-01
Chr02	irgsp1_rep	CDS	15447266	15447520	.	+	0	Parent=Os02t0461200-01
Chr02	irgsp1_rep	CDS	15447729	15448895	.	+	0	Parent=Os02t0461200-01
Chr02	irgsp1_rep	CDS	15449002	15449108	.	+	0	Parent=Os02t0461200-01
Chr02	irgsp1_rep	CDS	15450857	15451106	.	+	1	Parent=Os02t0461200-01
Chr02	irgsp1_rep	three_prime_UTR	15451107	15451384	.	+	.	Parent=Os02t0461200-01
Chr02	irgsp1_rep	mRNA	15452946	15453705	.	-	.	ID=Os02t0461300-00;Name=Os02t0461300-00;Locus_id=Os02g0461300;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6K6F6 (UniProt);TENOR=Os02t0461300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	15453461	15453705	.	-	0	Parent=Os02t0461300-00
Chr02	irgsp1_rep	CDS	15452946	15453162	.	-	1	Parent=Os02t0461300-00
Chr02	irgsp1_rep	mRNA	15453514	15453948	.	+	.	ID=Os02t0461400-01;Name=Os02t0461400-01;Locus_id=Os02g0461400;Note=Conserved hypothetical protein.;Transcript_evidence=AK059308 (DDBJ%2C Best hit);ORF_evidence=B8AHH1 (UniProt);NIAS_FLcDNA=001-025-G05;Expression=AK059308;TENOR=Os02t0461400-01;KEGG=Os02t0461400-01
Chr02	irgsp1_rep	five_prime_UTR	15453514	15453648	.	+	.	Parent=Os02t0461400-01
Chr02	irgsp1_rep	CDS	15453649	15453834	.	+	0	Parent=Os02t0461400-01
Chr02	irgsp1_rep	three_prime_UTR	15453835	15453948	.	+	.	Parent=Os02t0461400-01
Chr02	irgsp1_rep	mRNA	15459025	15460180	.	-	.	ID=Os02t0461500-01;Name=Os02t0461500-01;Locus_id=Os02g0461500;CGSNL Gene Symbol=FLA20;CGSNL Gene Name=FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 20;Oryzabase Gene Symbol Synonym(s)=OsFLA20;Oryzabase Gene Name Synonym(s)=fasciclin-like AGP 20%2C fasciclin-like arabinogalactan protein 20;Note=FAS1 domain domain containing protein.;Transcript_evidence=AK108772 (DDBJ%2C Best hit);ORF_evidence=XP_002297696.1 (RefSeq);InterPro=FAS1 domain (IPR000782);NIAS_FLcDNA=002-150-H07;Oryzabase=11355;Expression=AK108772;TENOR=Os02t0461500-01;KEGG=Os02t0461500-01
Chr02	irgsp1_rep	five_prime_UTR	15460150	15460180	.	-	.	Parent=Os02t0461500-01
Chr02	irgsp1_rep	CDS	15459235	15460149	.	-	0	Parent=Os02t0461500-01
Chr02	irgsp1_rep	three_prime_UTR	15459025	15459234	.	-	.	Parent=Os02t0461500-01
Chr02	irgsp1_rep	mRNA	15468610	15477399	.	-	.	ID=Os02t0461600-01;Name=Os02t0461600-01;Locus_id=Os02g0461600;Note=Protein of unknown function DUF1777 domain containing protein.;Transcript_evidence=AK105240 (DDBJ%2C Best hit);ORF_evidence=NP_001149699.1 (RefSeq);InterPro=Domain of unknown function DUF1777 (IPR013957);NIAS_FLcDNA=001-113-D01;Expression=AK105240;TENOR=Os02t0461600-01;KEGG=Os02t0461600-01
Chr02	irgsp1_rep	five_prime_UTR	15477240	15477399	.	-	.	Parent=Os02t0461600-01
Chr02	irgsp1_rep	CDS	15476640	15477239	.	-	0	Parent=Os02t0461600-01
Chr02	irgsp1_rep	three_prime_UTR	15476630	15476639	.	-	.	Parent=Os02t0461600-01
Chr02	irgsp1_rep	three_prime_UTR	15468610	15468818	.	-	.	Parent=Os02t0461600-01
Chr02	irgsp1_rep	mRNA	15468005	15477323	.	-	.	ID=Os02t0461600-02;Name=Os02t0461600-02;Locus_id=Os02g0461600;Note=Domain of unknown function DUF1777 domain containing protein.;Transcript_evidence=AK109833 (DDBJ%2C Best hit);ORF_evidence=GeneMark;InterPro=Domain of unknown function DUF1777 (IPR013957);NIAS_FLcDNA=002-148-C12;TENOR=Os02t0461600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	15476640	15477323	.	-	0	Parent=Os02t0461600-02
Chr02	irgsp1_rep	three_prime_UTR	15476630	15476639	.	-	.	Parent=Os02t0461600-02
Chr02	irgsp1_rep	three_prime_UTR	15468565	15468818	.	-	.	Parent=Os02t0461600-02
Chr02	irgsp1_rep	three_prime_UTR	15468005	15468484	.	-	.	Parent=Os02t0461600-02
Chr02	irgsp1_rep	mRNA	15467205	15469365	.	-	.	ID=Os02t0461600-03;Name=Os02t0461600-03;Locus_id=Os02g0461600;Note=Hypothetical gene.;Transcript_evidence=AK064251 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-105-C05;Expression=AK064251;TENOR=Os02t0461600-03;KEGG=Os02t0461600-03
Chr02	irgsp1_rep	five_prime_UTR	15468984	15469365	.	-	.	Parent=Os02t0461600-03
Chr02	irgsp1_rep	five_prime_UTR	15468724	15468903	.	-	.	Parent=Os02t0461600-03
Chr02	irgsp1_rep	five_prime_UTR	15468565	15468636	.	-	.	Parent=Os02t0461600-03
Chr02	irgsp1_rep	five_prime_UTR	15468396	15468484	.	-	.	Parent=Os02t0461600-03
Chr02	irgsp1_rep	five_prime_UTR	15467759	15467832	.	-	.	Parent=Os02t0461600-03
Chr02	irgsp1_rep	CDS	15467336	15467758	.	-	0	Parent=Os02t0461600-03
Chr02	irgsp1_rep	three_prime_UTR	15467205	15467335	.	-	.	Parent=Os02t0461600-03
Chr02	irgsp1_rep	mRNA	15467385	15467780	.	+	.	ID=Os02t0461700-00;Name=Os02t0461700-00;Locus_id=Os02g0461700;Note=Protein of unknown function DUF688 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3A6L0 (UniProt);InterPro=Protein of unknown function DUF688 (IPR007789);TENOR=Os02t0461700-00;KEGG=Os02t0461700-00
Chr02	irgsp1_rep	CDS	15467385	15467780	.	+	0	Parent=Os02t0461700-00
Chr02	irgsp1_rep	mRNA	15483745	15485901	.	-	.	ID=Os02t0461900-01;Name=Os02t0461900-01;Locus_id=Os02g0461900;Note=Similar to actin associated protein.;Transcript_evidence=AK119466 (DDBJ%2C Best hit);ORF_evidence=NP_001147614.1 (RefSeq);NIAS_FLcDNA=001-134-A03;Expression=AK119466;TENOR=Os02t0461900-01;KEGG=Os02t0461900-01
Chr02	irgsp1_rep	five_prime_UTR	15485769	15485901	.	-	.	Parent=Os02t0461900-01
Chr02	irgsp1_rep	CDS	15485369	15485768	.	-	0	Parent=Os02t0461900-01
Chr02	irgsp1_rep	CDS	15485160	15485272	.	-	2	Parent=Os02t0461900-01
Chr02	irgsp1_rep	three_prime_UTR	15483745	15485159	.	-	.	Parent=Os02t0461900-01
Chr02	irgsp1_rep	mRNA	15482803	15485869	.	-	.	ID=Os02t0461900-02;Name=Os02t0461900-02;Locus_id=Os02g0461900;Note=Similar to Actin associated protein.;Transcript_evidence=AK072619 (DDBJ%2C Best hit),AK104969 (DDBJ%2C Best hit);ORF_evidence=B6SJ45 (UniProt);NIAS_FLcDNA=J023131E20,001-121-E11;Expression=AK072619;TENOR=Os02t0461900-02;KEGG=Os02t0461900-02
Chr02	irgsp1_rep	five_prime_UTR	15485769	15485869	.	-	.	Parent=Os02t0461900-02
Chr02	irgsp1_rep	CDS	15485369	15485768	.	-	0	Parent=Os02t0461900-02
Chr02	irgsp1_rep	CDS	15485175	15485272	.	-	2	Parent=Os02t0461900-02
Chr02	irgsp1_rep	CDS	15483097	15483162	.	-	0	Parent=Os02t0461900-02
Chr02	irgsp1_rep	three_prime_UTR	15482803	15483096	.	-	.	Parent=Os02t0461900-02
Chr02	irgsp1_rep	mRNA	15489333	15498800	.	+	.	ID=Os02t0462000-01;Name=Os02t0462000-01;Locus_id=Os02g0462000;Note=Hypothetical gene.;Transcript_evidence=AK111825 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023058B03;TENOR=Os02t0462000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	15489333	15489492	.	+	.	Parent=Os02t0462000-01
Chr02	irgsp1_rep	five_prime_UTR	15489604	15489735	.	+	.	Parent=Os02t0462000-01
Chr02	irgsp1_rep	five_prime_UTR	15494444	15497131	.	+	.	Parent=Os02t0462000-01
Chr02	irgsp1_rep	CDS	15497132	15497380	.	+	0	Parent=Os02t0462000-01
Chr02	irgsp1_rep	three_prime_UTR	15497381	15498091	.	+	.	Parent=Os02t0462000-01
Chr02	irgsp1_rep	three_prime_UTR	15498219	15498800	.	+	.	Parent=Os02t0462000-01
Chr02	irgsp1_rep	mRNA	15489386	15494649	.	+	.	ID=Os02t0462000-02;Name=Os02t0462000-02;Locus_id=Os02g0462000;Note=Conserved hypothetical protein.;Transcript_evidence=AK062950 (DDBJ%2C Best hit);ORF_evidence=Q6K6F1 (UniProt);NIAS_FLcDNA=001-109-C07;Expression=AK062950;TENOR=Os02t0462000-02;KEGG=Os02t0462000-02
Chr02	irgsp1_rep	five_prime_UTR	15489386	15489492	.	+	.	Parent=Os02t0462000-02
Chr02	irgsp1_rep	CDS	15489604	15489735	.	+	0	Parent=Os02t0462000-02
Chr02	irgsp1_rep	CDS	15494444	15494485	.	+	0	Parent=Os02t0462000-02
Chr02	irgsp1_rep	three_prime_UTR	15494486	15494649	.	+	.	Parent=Os02t0462000-02
Chr02	irgsp1_rep	mRNA	15493934	15498779	.	+	.	ID=Os02t0462000-03;Name=Os02t0462000-03;Locus_id=Os02g0462000;Note=Hypothetical gene.;Transcript_evidence=AK120255 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013045P13;Expression=AK120255;TENOR=Os02t0462000-03;KEGG=Os02t0462000-03
Chr02	irgsp1_rep	five_prime_UTR	15493934	15497131	.	+	.	Parent=Os02t0462000-03
Chr02	irgsp1_rep	CDS	15497132	15497380	.	+	0	Parent=Os02t0462000-03
Chr02	irgsp1_rep	three_prime_UTR	15497381	15498091	.	+	.	Parent=Os02t0462000-03
Chr02	irgsp1_rep	three_prime_UTR	15498219	15498779	.	+	.	Parent=Os02t0462000-03
Chr02	irgsp1_rep	mRNA	15496218	15498439	.	-	.	ID=Os02t0462200-01;Name=Os02t0462200-01;Locus_id=Os02g0462200;Note=Conserved hypothetical protein.;Transcript_evidence=AK111841 (DDBJ%2C Best hit);ORF_evidence=A2X4K6 (UniProt);NIAS_FLcDNA=J023136H13;Expression=AK111841;TENOR=Os02t0462200-01;KEGG=Os02t0462200-01
Chr02	irgsp1_rep	five_prime_UTR	15498335	15498439	.	-	.	Parent=Os02t0462200-01
Chr02	irgsp1_rep	five_prime_UTR	15497908	15497922	.	-	.	Parent=Os02t0462200-01
Chr02	irgsp1_rep	CDS	15496597	15497907	.	-	0	Parent=Os02t0462200-01
Chr02	irgsp1_rep	three_prime_UTR	15496218	15496596	.	-	.	Parent=Os02t0462200-01
Chr02	irgsp1_rep	mRNA	15502622	15503795	.	-	.	ID=Os02t0462300-00;Name=Os02t0462300-00;Locus_id=Os02g0462300;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A3A6L5 (UniProt);GO=Molecular Function: nuclease activity (GO:0004518);InterPro=Endonuclease I (IPR007346);TENOR=Os02t0462300-00;KEGG=Os02t0462300-00
Chr02	irgsp1_rep	CDS	15503550	15503795	.	-	0	Parent=Os02t0462300-00
Chr02	irgsp1_rep	CDS	15502622	15503068	.	-	0	Parent=Os02t0462300-00
Chr02	irgsp1_rep	mRNA	15505302	15507245	.	-	.	ID=Os02t0462401-00;Name=Os02t0462401-00;Locus_id=Os02g0462401;Note=Conserved hypothetical protein.;Transcript_evidence=AK371132 (DDBJ);ORF_evidence=Q6K4Y8 (UniProt);TENOR=Os02t0462401-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	15507216	15507245	.	-	.	Parent=Os02t0462401-00
Chr02	irgsp1_rep	CDS	15506778	15507215	.	-	0	Parent=Os02t0462401-00
Chr02	irgsp1_rep	CDS	15506563	15506627	.	-	0	Parent=Os02t0462401-00
Chr02	irgsp1_rep	CDS	15506377	15506441	.	-	1	Parent=Os02t0462401-00
Chr02	irgsp1_rep	CDS	15506190	15506280	.	-	2	Parent=Os02t0462401-00
Chr02	irgsp1_rep	CDS	15505770	15505848	.	-	1	Parent=Os02t0462401-00
Chr02	irgsp1_rep	three_prime_UTR	15505718	15505769	.	-	.	Parent=Os02t0462401-00
Chr02	irgsp1_rep	three_prime_UTR	15505302	15505418	.	-	.	Parent=Os02t0462401-00
Chr02	irgsp1_rep	mRNA	15510440	15512571	.	+	.	ID=Os02t0462500-01;Name=Os02t0462500-01;Locus_id=Os02g0462500;Note=Hypothetical protein.;Transcript_evidence=AK063739 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-120-F06;TENOR=Os02t0462500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	15510440	15510440	.	+	.	Parent=Os02t0462500-01
Chr02	irgsp1_rep	CDS	15510441	15510582	.	+	0	Parent=Os02t0462500-01
Chr02	irgsp1_rep	CDS	15510715	15510821	.	+	2	Parent=Os02t0462500-01
Chr02	irgsp1_rep	three_prime_UTR	15510822	15510824	.	+	.	Parent=Os02t0462500-01
Chr02	irgsp1_rep	three_prime_UTR	15512289	15512571	.	+	.	Parent=Os02t0462500-01
Chr02	irgsp1_rep	mRNA	15521497	15522722	.	+	.	ID=Os02t0462800-01;Name=Os02t0462800-01;Locus_id=Os02g0462800;RAP-DB Gene Symbol Synonym(s)=WRKY42%2C OsWRKY42;RAP-DB Gene Name Synonym(s)=WRKY GENE 42%2C Rice WRKY gene42;CGSNL Gene Symbol=WRKY42;CGSNL Gene Name=WRKY GENE 42;Oryzabase Gene Symbol Synonym(s)=OsWRKY42%2C WRKY-42;Oryzabase Gene Name Synonym(s)=Rice WRKY gene42%2C WRKY transcription factor 42;Note=WRKY transcription factor 42%2C Transcriptional repressor%2C Promotion of leaf senescence;Transcript_evidence=AK110587,AY676923 (Guang Lu Ai%2C indica);ORF_evidence=Q6K4Y7,Q6IEN9;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Zn-cluster domain (IPR018872),DNA-binding WRKY (IPR003657);NIAS_FLcDNA=002-168-F03;Manual Curation=July 10%2C 2015;Literature_PMID=25081037,16919842,15047897,Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6556;Expression=AK110587;TENOR=Os02t0462800-01;KEGG=Os02t0462800-01
Chr02	irgsp1_rep	five_prime_UTR	15521497	15521535	.	+	.	Parent=Os02t0462800-01
Chr02	irgsp1_rep	CDS	15521536	15521966	.	+	0	Parent=Os02t0462800-01
Chr02	irgsp1_rep	CDS	15522054	15522185	.	+	1	Parent=Os02t0462800-01
Chr02	irgsp1_rep	CDS	15522283	15522481	.	+	1	Parent=Os02t0462800-01
Chr02	irgsp1_rep	three_prime_UTR	15522482	15522722	.	+	.	Parent=Os02t0462800-01
Chr02	irgsp1_rep	mRNA	15524149	15527804	.	+	.	ID=Os02t0462900-01;Name=Os02t0462900-01;Locus_id=Os02g0462900;Note=Similar to Prefoldin subunit 1.;Transcript_evidence=AK243223 (DDBJ%2C Best hit);ORF_evidence=B6SIP7 (UniProt);GO=Biological Process: protein folding (GO:0006457),Cellular Component: prefoldin complex (GO:0016272),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Prefoldin beta-like (IPR002777),Prefoldin (IPR009053);NIAS_FLcDNA=J100043N12;TENOR=Os02t0462900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	15524149	15524295	.	+	.	Parent=Os02t0462900-01
Chr02	irgsp1_rep	CDS	15524296	15524319	.	+	0	Parent=Os02t0462900-01
Chr02	irgsp1_rep	CDS	15524477	15524530	.	+	0	Parent=Os02t0462900-01
Chr02	irgsp1_rep	CDS	15526275	15526384	.	+	0	Parent=Os02t0462900-01
Chr02	irgsp1_rep	CDS	15527350	15527383	.	+	1	Parent=Os02t0462900-01
Chr02	irgsp1_rep	three_prime_UTR	15527384	15527436	.	+	.	Parent=Os02t0462900-01
Chr02	irgsp1_rep	three_prime_UTR	15527533	15527804	.	+	.	Parent=Os02t0462900-01
Chr02	irgsp1_rep	mRNA	15543720	15544246	.	-	.	ID=Os02t0463401-00;Name=Os02t0463401-00;Locus_id=Os02g0463401;Note=Conserved hypothetical protein.;Transcript_evidence=CT835364 (DDBJ%2C Best hit);ORF_evidence=NP_001172947.1 (RefSeq);TENOR=Os02t0463401-00;KEGG=Os02t0463401-00
Chr02	irgsp1_rep	five_prime_UTR	15544076	15544246	.	-	.	Parent=Os02t0463401-00
Chr02	irgsp1_rep	CDS	15543830	15544075	.	-	0	Parent=Os02t0463401-00
Chr02	irgsp1_rep	three_prime_UTR	15543720	15543829	.	-	.	Parent=Os02t0463401-00
Chr02	irgsp1_rep	mRNA	15549318	15558300	.	-	.	ID=Os02t0463500-01;Name=Os02t0463500-01;Locus_id=Os02g0463500;CGSNL Gene Symbol=SCP7;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 7;Oryzabase Gene Symbol Synonym(s)=OsSCP7;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 7;Note=Peptidase S10%2C serine carboxypeptidase domain containing protein.;Transcript_evidence=AK107401 (DDBJ%2C Best hit);ORF_evidence=Q6K4Y0 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563);NIAS_FLcDNA=002-127-D10;Oryzabase=19191;TENOR=Os02t0463500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	15558263	15558300	.	-	.	Parent=Os02t0463500-01
Chr02	irgsp1_rep	CDS	15558012	15558262	.	-	0	Parent=Os02t0463500-01
Chr02	irgsp1_rep	CDS	15555574	15555722	.	-	1	Parent=Os02t0463500-01
Chr02	irgsp1_rep	CDS	15555090	15555169	.	-	2	Parent=Os02t0463500-01
Chr02	irgsp1_rep	CDS	15553984	15554106	.	-	0	Parent=Os02t0463500-01
Chr02	irgsp1_rep	CDS	15553808	15553910	.	-	0	Parent=Os02t0463500-01
Chr02	irgsp1_rep	CDS	15553610	15553647	.	-	2	Parent=Os02t0463500-01
Chr02	irgsp1_rep	CDS	15553340	15553441	.	-	0	Parent=Os02t0463500-01
Chr02	irgsp1_rep	CDS	15553141	15553221	.	-	0	Parent=Os02t0463500-01
Chr02	irgsp1_rep	CDS	15552925	15552993	.	-	0	Parent=Os02t0463500-01
Chr02	irgsp1_rep	three_prime_UTR	15552917	15552924	.	-	.	Parent=Os02t0463500-01
Chr02	irgsp1_rep	three_prime_UTR	15550694	15550807	.	-	.	Parent=Os02t0463500-01
Chr02	irgsp1_rep	three_prime_UTR	15549594	15549639	.	-	.	Parent=Os02t0463500-01
Chr02	irgsp1_rep	three_prime_UTR	15549318	15549492	.	-	.	Parent=Os02t0463500-01
Chr02	irgsp1_rep	mRNA	15560186	15561859	.	+	.	ID=Os02t0463725-00;Name=Os02t0463725-00;Locus_id=Os02g0463725;Note=Conserved hypothetical protein.;Transcript_evidence=EU846996 (DDBJ%2C Best hit);ORF_evidence=Q6K4X9 (UniProt);TENOR=Os02t0463725-00
Chr02	irgsp1_rep	five_prime_UTR	15560186	15560205	.	+	.	Parent=Os02t0463725-00
Chr02	irgsp1_rep	CDS	15560206	15560673	.	+	0	Parent=Os02t0463725-00
Chr02	irgsp1_rep	CDS	15560769	15560777	.	+	0	Parent=Os02t0463725-00
Chr02	irgsp1_rep	three_prime_UTR	15560778	15561859	.	+	.	Parent=Os02t0463725-00
Chr02	irgsp1_rep	mRNA	15585408	15590536	.	+	.	ID=Os02t0464400-01;Name=Os02t0464400-01;Locus_id=Os02g0464400;Note=Similar to D-mannose binding lectin family protein%2C expressed.;Transcript_evidence=AK242628 (DDBJ%2C Best hit);ORF_evidence=Q2RAY8 (UniProt);InterPro=Plant organelle RNA recognition domain (IPR021099);NIAS_FLcDNA=J090020K10;TENOR=Os02t0464400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	15585408	15585459	.	+	.	Parent=Os02t0464400-01
Chr02	irgsp1_rep	CDS	15585460	15586668	.	+	0	Parent=Os02t0464400-01
Chr02	irgsp1_rep	three_prime_UTR	15586669	15587497	.	+	.	Parent=Os02t0464400-01
Chr02	irgsp1_rep	three_prime_UTR	15587745	15587946	.	+	.	Parent=Os02t0464400-01
Chr02	irgsp1_rep	three_prime_UTR	15588525	15590536	.	+	.	Parent=Os02t0464400-01
Chr02	irgsp1_rep	mRNA	15594984	15597830	.	+	.	ID=Os02t0464500-00;Name=Os02t0464500-00;Locus_id=Os02g0464500;Note=Protein of unknown function DUF3133 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001046806.2 (RefSeq);InterPro=Protein of unknown function DUF3133 (IPR021480);TENOR=Os02t0464500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	15594984	15595101	.	+	0	Parent=Os02t0464500-00
Chr02	irgsp1_rep	CDS	15595198	15596451	.	+	2	Parent=Os02t0464500-00
Chr02	irgsp1_rep	CDS	15596689	15597830	.	+	2	Parent=Os02t0464500-00
Chr02	irgsp1_rep	mRNA	15603245	15606096	.	-	.	ID=Os02t0464550-01;Name=Os02t0464550-01;Locus_id=Os02g0464550;Note=Hypothetical protein.;Transcript_evidence=AK240695 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J043009I03;TENOR=Os02t0464550-01;KEGG=Os02t0464550-01
Chr02	irgsp1_rep	CDS	15605651	15606096	.	-	0	Parent=Os02t0464550-01
Chr02	irgsp1_rep	CDS	15603446	15603512	.	-	1	Parent=Os02t0464550-01
Chr02	irgsp1_rep	three_prime_UTR	15603245	15603445	.	-	.	Parent=Os02t0464550-01
Chr02	irgsp1_rep	mRNA	15612040	15612668	.	-	.	ID=Os02t0464700-01;Name=Os02t0464700-01;Locus_id=Os02g0464700;Note=Hypothetical protein.;Transcript_evidence=AK107077 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-121-F05;Expression=AK107077;TENOR=Os02t0464700-01;KEGG=Os02t0464700-01
Chr02	irgsp1_rep	five_prime_UTR	15612361	15612668	.	-	.	Parent=Os02t0464700-01
Chr02	irgsp1_rep	CDS	15612100	15612360	.	-	0	Parent=Os02t0464700-01
Chr02	irgsp1_rep	three_prime_UTR	15612040	15612099	.	-	.	Parent=Os02t0464700-01
Chr02	irgsp1_rep	mRNA	15617478	15618995	.	-	.	ID=Os02t0464900-00;Name=Os02t0464900-00;Locus_id=Os02g0464900;Note=Similar to J100058K15%2C full insert sequence.;Transcript_evidence=BT085175 (DDBJ);ORF_evidence=B7FA96 (UniProt);GO=Biological Process: protein metabolic process (GO:0019538);InterPro=Clp%2C N-terminal (IPR004176);TENOR=Os02t0464900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	15617478	15618995	.	-	0	Parent=Os02t0464900-00
Chr02	irgsp1_rep	mRNA	15626805	15628300	.	+	.	ID=Os02t0465000-00;Name=Os02t0465000-00;Locus_id=Os02g0465000;Note=Similar to DNA repair protein RAD23.;Transcript_evidence=ab initio prediction;ORF_evidence=B4FQ07 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal (IPR000449),UBA-like (IPR009060),Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (IPR015940);TENOR=Os02t0465000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	15626805	15626818	.	+	0	Parent=Os02t0465000-00
Chr02	irgsp1_rep	CDS	15627711	15627888	.	+	1	Parent=Os02t0465000-00
Chr02	irgsp1_rep	CDS	15628214	15628300	.	+	0	Parent=Os02t0465000-00
Chr02	irgsp1_rep	mRNA	15641302	15647376	.	-	.	ID=Os02t0465400-01;Name=Os02t0465400-01;Locus_id=Os02g0465400;Note=Similar to 7-dehydrocholesterol reductase (EC 1.3.1.21) (7-DHC reductase) (Sterol delta-7-reductase) (Dwarf5 protein).;Transcript_evidence=AK100199 (DDBJ%2C Best hit);ORF_evidence=B4FWK5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: membrane (GO:0016020),Molecular Function: oxidoreductase activity%2C acting on the CH-CH group of donors%2C NAD or NADP as acceptor (GO:0016628);InterPro=Ergosterol biosynthesis ERG4/ERG24 (IPR001171),Sterol reductase%2C conserved site (IPR018083);NIAS_FLcDNA=J023038E06;Expression=AK100199;TENOR=Os02t0465400-01;KEGG=Os02t0465400-01 (EC:1.3.1.21)
Chr02	irgsp1_rep	five_prime_UTR	15647227	15647376	.	-	.	Parent=Os02t0465400-01
Chr02	irgsp1_rep	CDS	15647090	15647226	.	-	0	Parent=Os02t0465400-01
Chr02	irgsp1_rep	CDS	15646749	15646974	.	-	1	Parent=Os02t0465400-01
Chr02	irgsp1_rep	CDS	15646481	15646536	.	-	0	Parent=Os02t0465400-01
Chr02	irgsp1_rep	CDS	15645324	15645426	.	-	1	Parent=Os02t0465400-01
Chr02	irgsp1_rep	CDS	15645167	15645232	.	-	0	Parent=Os02t0465400-01
Chr02	irgsp1_rep	CDS	15644818	15644931	.	-	0	Parent=Os02t0465400-01
Chr02	irgsp1_rep	CDS	15644472	15644598	.	-	0	Parent=Os02t0465400-01
Chr02	irgsp1_rep	CDS	15643138	15643238	.	-	2	Parent=Os02t0465400-01
Chr02	irgsp1_rep	CDS	15642885	15643010	.	-	0	Parent=Os02t0465400-01
Chr02	irgsp1_rep	CDS	15642732	15642796	.	-	0	Parent=Os02t0465400-01
Chr02	irgsp1_rep	CDS	15642531	15642612	.	-	1	Parent=Os02t0465400-01
Chr02	irgsp1_rep	CDS	15642373	15642455	.	-	0	Parent=Os02t0465400-01
Chr02	irgsp1_rep	CDS	15641711	15641777	.	-	1	Parent=Os02t0465400-01
Chr02	irgsp1_rep	three_prime_UTR	15641302	15641710	.	-	.	Parent=Os02t0465400-01
Chr02	irgsp1_rep	mRNA	15650240	15655509	.	-	.	ID=Os02t0465500-01;Name=Os02t0465500-01;Locus_id=Os02g0465500;Note=Exonuclease domain containing protein.;Transcript_evidence=AK070377 (DDBJ%2C Best hit);ORF_evidence=B6U6N3 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: exonuclease activity (GO:0004527);InterPro=Exonuclease (IPR006055),Ribonuclease H-like (IPR012337),Exonuclease%2C RNase T/DNA polymerase III (IPR013520);NIAS_FLcDNA=J023054H24;Expression=AK070377;TENOR=Os02t0465500-01;KEGG=Os02t0465500-01
Chr02	irgsp1_rep	five_prime_UTR	15655339	15655509	.	-	.	Parent=Os02t0465500-01
Chr02	irgsp1_rep	five_prime_UTR	15655080	15655124	.	-	.	Parent=Os02t0465500-01
Chr02	irgsp1_rep	CDS	15654962	15655079	.	-	0	Parent=Os02t0465500-01
Chr02	irgsp1_rep	CDS	15654246	15654356	.	-	2	Parent=Os02t0465500-01
Chr02	irgsp1_rep	CDS	15653359	15653435	.	-	2	Parent=Os02t0465500-01
Chr02	irgsp1_rep	CDS	15653030	15653111	.	-	0	Parent=Os02t0465500-01
Chr02	irgsp1_rep	CDS	15652823	15652878	.	-	2	Parent=Os02t0465500-01
Chr02	irgsp1_rep	CDS	15652185	15652271	.	-	0	Parent=Os02t0465500-01
Chr02	irgsp1_rep	CDS	15651772	15651862	.	-	0	Parent=Os02t0465500-01
Chr02	irgsp1_rep	CDS	15650547	15650668	.	-	2	Parent=Os02t0465500-01
Chr02	irgsp1_rep	three_prime_UTR	15650240	15650546	.	-	.	Parent=Os02t0465500-01
Chr02	irgsp1_rep	mRNA	15659380	15660788	.	-	.	ID=Os02t0465600-01;Name=Os02t0465600-01;Locus_id=Os02g0465600;Note=Kelch-type beta propeller domain containing protein.;Transcript_evidence=AK243626 (DDBJ%2C Best hit);ORF_evidence=NP_001172956.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WW/Rsp5/WWP (IPR001202),Galactose oxidase%2C beta-propeller (IPR015916);NIAS_FLcDNA=J100086M08;TENOR=Os02t0465600-01;KEGG=Os02t0465600-01
Chr02	irgsp1_rep	five_prime_UTR	15660678	15660788	.	-	.	Parent=Os02t0465600-01
Chr02	irgsp1_rep	CDS	15659472	15660677	.	-	0	Parent=Os02t0465600-01
Chr02	irgsp1_rep	three_prime_UTR	15659380	15659471	.	-	.	Parent=Os02t0465600-01
Chr02	irgsp1_rep	mRNA	15676320	15679460	.	-	.	ID=Os02t0465900-01;Name=Os02t0465900-01;Locus_id=Os02g0465900;Oryzabase Gene Symbol Synonym(s)=OsARP%2C OsCTP;Oryzabase Gene Name Synonym(s)=antiporter regulating protein%2C antiporter-regulating protein%2C cation transporter%2C cation transport protein%2C pistil extensin like protein;Note=ChaC-like protein family protein.;Transcript_evidence=AK071205 (DDBJ%2C Best hit),AK104187 (DDBJ%2C Best hit),AK104223 (DDBJ%2C Best hit),AK104241 (DDBJ%2C Best hit),AK104351 (DDBJ%2C Best hit),AK104503 (DDBJ%2C Best hit),AK104516 (DDBJ%2C Best hit),AK119187 (DDBJ%2C Best hit);ORF_evidence=B6SRQ0 (UniProt);NIAS_FLcDNA=J023085D08,006-302-G08,006-306-E10,006-308-B07,001-034-G09,006-302-F05,006-303-C03,001-039-G07;Oryzabase=10371;TENOR=Os02t0465900-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	15679251	15679460	.	-	.	Parent=Os02t0465900-01
Chr02	irgsp1_rep	five_prime_UTR	15678979	15678988	.	-	.	Parent=Os02t0465900-01
Chr02	irgsp1_rep	CDS	15678870	15678978	.	-	0	Parent=Os02t0465900-01
Chr02	irgsp1_rep	CDS	15678659	15678735	.	-	2	Parent=Os02t0465900-01
Chr02	irgsp1_rep	CDS	15677562	15677618	.	-	0	Parent=Os02t0465900-01
Chr02	irgsp1_rep	CDS	15677419	15677475	.	-	0	Parent=Os02t0465900-01
Chr02	irgsp1_rep	CDS	15677288	15677328	.	-	0	Parent=Os02t0465900-01
Chr02	irgsp1_rep	CDS	15677130	15677201	.	-	1	Parent=Os02t0465900-01
Chr02	irgsp1_rep	CDS	15676960	15677039	.	-	1	Parent=Os02t0465900-01
Chr02	irgsp1_rep	CDS	15676577	15676734	.	-	2	Parent=Os02t0465900-01
Chr02	irgsp1_rep	three_prime_UTR	15676320	15676576	.	-	.	Parent=Os02t0465900-01
Chr02	irgsp1_rep	mRNA	15685285	15686585	.	-	.	ID=Os02t0466050-01;Name=Os02t0466050-01;Locus_id=Os02g0466050;Note=Conserved hypothetical protein.;Transcript_evidence=AK288502 (DDBJ%2C Best hit);ORF_evidence=Q2QUQ2 (UniProt);NIAS_FLcDNA=J090041D12;TENOR=Os02t0466050-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	15685759	15686585	.	-	.	Parent=Os02t0466050-01
Chr02	irgsp1_rep	CDS	15685657	15685758	.	-	0	Parent=Os02t0466050-01
Chr02	irgsp1_rep	three_prime_UTR	15685285	15685656	.	-	.	Parent=Os02t0466050-01
Chr02	irgsp1_rep	mRNA	15697843	15699151	.	+	.	ID=Os02t0466400-01;Name=Os02t0466400-01;Locus_id=Os02g0466400;CGSNL Gene Symbol=ITPK4;CGSNL Gene Name=INOSITOL 1%2C3%2C4-TRISPHOSPHATE 5/6-KINASE 4;Oryzabase Gene Symbol Synonym(s)=OsITPK4%2C OsITP5/6K-4%2C ITP5/6K-4;Oryzabase Gene Name Synonym(s)=inositol 1%2C 3%2C 4-trisphosphate 5/6-kinase 4;Note=Similar to Inositol phosphate kinase.;Transcript_evidence=AK071209 (DDBJ%2C Best hit);ORF_evidence=A0AQQ6 (UniProt);GO=Biological Process: inositol trisphosphate metabolic process (GO:0032957),Cellular Component: intracellular (GO:0005622),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: ATP binding (GO:0005524),Molecular Function: inositol tetrakisphosphate 1-kinase activity (GO:0047325),Molecular Function: inositol-1%2C3%2C4-trisphosphate 6-kinase activity (GO:0052725),Molecular Function: inositol-1%2C3%2C4-trisphosphate 5-kinase activity (GO:0052726);InterPro=Inositol-tetrakisphosphate 1-kinase (IPR008656),Inositol-tetrakisphosphate 1-kinase%2C plant (IPR017427);NIAS_FLcDNA=J023087H13;Oryzabase=11440;Expression=AK071209;TENOR=Os02t0466400-01;KEGG=Os02t0466400-01
Chr02	irgsp1_rep	five_prime_UTR	15697843	15697843	.	+	.	Parent=Os02t0466400-01
Chr02	irgsp1_rep	CDS	15697844	15699016	.	+	0	Parent=Os02t0466400-01
Chr02	irgsp1_rep	three_prime_UTR	15699017	15699151	.	+	.	Parent=Os02t0466400-01
Chr02	irgsp1_rep	mRNA	15705569	15709140	.	-	.	ID=Os02t0466600-01;Name=Os02t0466600-01;Locus_id=Os02g0466600;Note=Conserved hypothetical protein.;Transcript_evidence=AK067299 (DDBJ%2C Best hit);ORF_evidence=B8AHI7 (UniProt);NIAS_FLcDNA=J013104E03;TENOR=Os02t0466600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	15709139	15709140	.	-	.	Parent=Os02t0466600-01
Chr02	irgsp1_rep	CDS	15708641	15709138	.	-	0	Parent=Os02t0466600-01
Chr02	irgsp1_rep	three_prime_UTR	15706748	15708640	.	-	.	Parent=Os02t0466600-01
Chr02	irgsp1_rep	three_prime_UTR	15705569	15706564	.	-	.	Parent=Os02t0466600-01
Chr02	irgsp1_rep	mRNA	15717045	15717661	.	+	.	ID=Os02t0466900-00;Name=Os02t0466900-00;Locus_id=Os02g0466900;Note=Hypothetical protein.;Transcript_evidence=EU953938 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0466900-00
Chr02	irgsp1_rep	five_prime_UTR	15717045	15717046	.	+	.	Parent=Os02t0466900-00
Chr02	irgsp1_rep	CDS	15717047	15717661	.	+	0	Parent=Os02t0466900-00
Chr02	irgsp1_rep	mRNA	15717050	15718956	.	-	.	ID=Os02t0467000-00;Name=Os02t0467000-00;Locus_id=Os02g0467000;Oryzabase Gene Symbol Synonym(s)=OsC4H;Oryzabase Gene Name Synonym(s)=cytoChrome P450%2C CINNAMATE-4-HYDROXYLASE;Note=Similar to trans-cinnamate 4-monooxygenase.;Transcript_evidence=EU970586 (DDBJ);ORF_evidence=NP_001151365.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);Oryzabase=16778;TENOR=Os02t0467000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	15717863	15718956	.	-	0	Parent=Os02t0467000-00
Chr02	irgsp1_rep	CDS	15717050	15717761	.	-	1	Parent=Os02t0467000-00
Chr02	irgsp1_rep	mRNA	15725827	15726670	.	-	.	ID=Os02t0467200-01;Name=Os02t0467200-01;Locus_id=Os02g0467200;Note=Hypothetical protein.;Transcript_evidence=AK063704 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=001-119-G12;TENOR=Os02t0467200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	15726670	15726670	.	-	.	Parent=Os02t0467200-01
Chr02	irgsp1_rep	CDS	15726268	15726669	.	-	0	Parent=Os02t0467200-01
Chr02	irgsp1_rep	three_prime_UTR	15726229	15726267	.	-	.	Parent=Os02t0467200-01
Chr02	irgsp1_rep	three_prime_UTR	15726036	15726149	.	-	.	Parent=Os02t0467200-01
Chr02	irgsp1_rep	three_prime_UTR	15725827	15725935	.	-	.	Parent=Os02t0467200-01
Chr02	irgsp1_rep	mRNA	15726766	15727534	.	-	.	ID=Os02t0467300-01;Name=Os02t0467300-01;Locus_id=Os02g0467300;Note=Conserved hypothetical protein.;Transcript_evidence=AK064583 (DDBJ%2C Best hit);ORF_evidence=B9EZW8 (UniProt);NIAS_FLcDNA=002-112-F04;Expression=AK064583;TENOR=Os02t0467300-01;KEGG=Os02t0467300-01
Chr02	irgsp1_rep	five_prime_UTR	15727472	15727534	.	-	.	Parent=Os02t0467300-01
Chr02	irgsp1_rep	CDS	15727460	15727471	.	-	0	Parent=Os02t0467300-01
Chr02	irgsp1_rep	CDS	15726837	15727358	.	-	0	Parent=Os02t0467300-01
Chr02	irgsp1_rep	three_prime_UTR	15726766	15726836	.	-	.	Parent=Os02t0467300-01
Chr02	irgsp1_rep	mRNA	15728987	15733539	.	-	.	ID=Os02t0467400-01;Name=Os02t0467400-01;Locus_id=Os02g0467400;Note=Hypothetical protein.;Transcript_evidence=AK072333 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J023040C14;TENOR=Os02t0467400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	15733451	15733539	.	-	.	Parent=Os02t0467400-01
Chr02	irgsp1_rep	CDS	15733139	15733450	.	-	0	Parent=Os02t0467400-01
Chr02	irgsp1_rep	three_prime_UTR	15730513	15733138	.	-	.	Parent=Os02t0467400-01
Chr02	irgsp1_rep	three_prime_UTR	15730345	15730350	.	-	.	Parent=Os02t0467400-01
Chr02	irgsp1_rep	three_prime_UTR	15729894	15730056	.	-	.	Parent=Os02t0467400-01
Chr02	irgsp1_rep	three_prime_UTR	15728987	15729775	.	-	.	Parent=Os02t0467400-01
Chr02	irgsp1_rep	mRNA	15730030	15733520	.	-	.	ID=Os02t0467400-02;Name=Os02t0467400-02;Locus_id=Os02g0467400;Note=Hypothetical protein.;Transcript_evidence=AK073879 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J033074K13;TENOR=Os02t0467400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	15733451	15733520	.	-	.	Parent=Os02t0467400-02
Chr02	irgsp1_rep	CDS	15733139	15733450	.	-	0	Parent=Os02t0467400-02
Chr02	irgsp1_rep	three_prime_UTR	15730513	15733138	.	-	.	Parent=Os02t0467400-02
Chr02	irgsp1_rep	three_prime_UTR	15730030	15730350	.	-	.	Parent=Os02t0467400-02
Chr02	irgsp1_rep	mRNA	15732868	15733494	.	-	.	ID=Os02t0467400-03;Name=Os02t0467400-03;Locus_id=Os02g0467400;Note=Hypothetical protein.;Transcript_evidence=AK121931 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J033106M13;TENOR=Os02t0467400-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	15733451	15733494	.	-	.	Parent=Os02t0467400-03
Chr02	irgsp1_rep	CDS	15733139	15733450	.	-	0	Parent=Os02t0467400-03
Chr02	irgsp1_rep	three_prime_UTR	15732868	15733138	.	-	.	Parent=Os02t0467400-03
Chr02	irgsp1_rep	mRNA	15729134	15732855	.	+	.	ID=Os02t0467500-01;Name=Os02t0467500-01;Locus_id=Os02g0467500;Oryzabase Gene Name Synonym(s)=aminotransferase;Note=Aminotransferase-like%2C plant mobile domain domain containing protein.;Transcript_evidence=AK241573 (DDBJ%2C Best hit);ORF_evidence=B9EZW9 (UniProt);InterPro=Aminotransferase-like%2C plant mobile domain (IPR019557);NIAS_FLcDNA=J065180D07;Oryzabase=19290;TENOR=Os02t0467500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	15729134	15729203	.	+	.	Parent=Os02t0467500-01
Chr02	irgsp1_rep	five_prime_UTR	15729284	15729292	.	+	.	Parent=Os02t0467500-01
Chr02	irgsp1_rep	CDS	15729293	15729904	.	+	0	Parent=Os02t0467500-01
Chr02	irgsp1_rep	CDS	15729977	15730126	.	+	0	Parent=Os02t0467500-01
Chr02	irgsp1_rep	CDS	15730212	15730607	.	+	0	Parent=Os02t0467500-01
Chr02	irgsp1_rep	CDS	15730771	15730911	.	+	0	Parent=Os02t0467500-01
Chr02	irgsp1_rep	CDS	15731011	15731142	.	+	0	Parent=Os02t0467500-01
Chr02	irgsp1_rep	CDS	15731217	15731405	.	+	0	Parent=Os02t0467500-01
Chr02	irgsp1_rep	three_prime_UTR	15731406	15731679	.	+	.	Parent=Os02t0467500-01
Chr02	irgsp1_rep	three_prime_UTR	15731761	15731952	.	+	.	Parent=Os02t0467500-01
Chr02	irgsp1_rep	three_prime_UTR	15732023	15732160	.	+	.	Parent=Os02t0467500-01
Chr02	irgsp1_rep	three_prime_UTR	15732237	15732361	.	+	.	Parent=Os02t0467500-01
Chr02	irgsp1_rep	three_prime_UTR	15732441	15732506	.	+	.	Parent=Os02t0467500-01
Chr02	irgsp1_rep	three_prime_UTR	15732607	15732855	.	+	.	Parent=Os02t0467500-01
Chr02	irgsp1_rep	mRNA	15734828	15736855	.	+	.	ID=Os02t0467600-01;Name=Os02t0467600-01;Locus_id=Os02g0467600;Oryzabase Gene Symbol Synonym(s)=C4H1%2C OsC4H1%2C OsC4H%2C C4H;Oryzabase Gene Name Synonym(s)=cinnamate 4-hydroxylase 1;Note=Similar to Cinnamate 4-hydroxylase CYP73.;Transcript_evidence=AK072588 (DDBJ%2C Best hit);ORF_evidence=NP_001151365.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J023132G16;Oryzabase=16717;Expression=AK072588;TENOR=Os02t0467600-01;KEGG=Os02t0467600-01
Chr02	irgsp1_rep	five_prime_UTR	15734828	15734931	.	+	.	Parent=Os02t0467600-01
Chr02	irgsp1_rep	CDS	15734932	15735794	.	+	0	Parent=Os02t0467600-01
Chr02	irgsp1_rep	CDS	15735914	15736652	.	+	1	Parent=Os02t0467600-01
Chr02	irgsp1_rep	three_prime_UTR	15736653	15736855	.	+	.	Parent=Os02t0467600-01
Chr02	irgsp1_rep	mRNA	15740126	15742858	.	+	.	ID=Os02t0467700-01;Name=Os02t0467700-01;Locus_id=Os02g0467700;Note=Glycosyl transferase%2C family 28%2C C-terminal domain containing protein.;Transcript_evidence=AK121672 (DDBJ%2C Best hit);ORF_evidence=XP_002870137.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: lipid glycosylation (GO:0030259),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Glycosyl transferase%2C family 28%2C C-terminal (IPR007235);NIAS_FLcDNA=J033068B18;Expression=AK121672;TENOR=Os02t0467700-01;KEGG=Os02t0467700-01 (EC:2.4.1.141)
Chr02	irgsp1_rep	five_prime_UTR	15740126	15740257	.	+	.	Parent=Os02t0467700-01
Chr02	irgsp1_rep	five_prime_UTR	15740808	15740942	.	+	.	Parent=Os02t0467700-01
Chr02	irgsp1_rep	CDS	15740943	15740957	.	+	0	Parent=Os02t0467700-01
Chr02	irgsp1_rep	CDS	15741438	15741534	.	+	0	Parent=Os02t0467700-01
Chr02	irgsp1_rep	CDS	15742508	15742764	.	+	2	Parent=Os02t0467700-01
Chr02	irgsp1_rep	three_prime_UTR	15742765	15742858	.	+	.	Parent=Os02t0467700-01
Chr02	irgsp1_rep	mRNA	15759406	15760551	.	+	.	ID=Os02t0468100-00;Name=Os02t0468100-00;Locus_id=Os02g0468100;Note=Similar to Wax synthase isoform 1.;Transcript_evidence=BT034476 (DDBJ);ORF_evidence=B6TXA3 (UniProt);InterPro=Membrane bound O-acyl transferase%2C MBOAT (IPR004299),Wax synthase (IPR017088);TENOR=Os02t0468100-00;KEGG=Os02t0468100-00
Chr02	irgsp1_rep	CDS	15759406	15760551	.	+	0	Parent=Os02t0468100-00
Chr02	irgsp1_rep	mRNA	15762105	15765780	.	-	.	ID=Os02t0468200-01;Name=Os02t0468200-01;Locus_id=Os02g0468200;Note=Protein of unknown function DUF652 family protein.;Transcript_evidence=AK103767 (DDBJ%2C Best hit);ORF_evidence=A2X4N5 (UniProt);InterPro=Protein of unknown function DUF652 (IPR006984);NIAS_FLcDNA=J033143I02;Expression=AK103767;TENOR=Os02t0468200-01;KEGG=Os02t0468200-01
Chr02	irgsp1_rep	five_prime_UTR	15765587	15765780	.	-	.	Parent=Os02t0468200-01
Chr02	irgsp1_rep	CDS	15765309	15765586	.	-	0	Parent=Os02t0468200-01
Chr02	irgsp1_rep	CDS	15765087	15765207	.	-	1	Parent=Os02t0468200-01
Chr02	irgsp1_rep	CDS	15762972	15763247	.	-	0	Parent=Os02t0468200-01
Chr02	irgsp1_rep	CDS	15762661	15762726	.	-	0	Parent=Os02t0468200-01
Chr02	irgsp1_rep	CDS	15762384	15762476	.	-	0	Parent=Os02t0468200-01
Chr02	irgsp1_rep	three_prime_UTR	15762105	15762383	.	-	.	Parent=Os02t0468200-01
Chr02	irgsp1_rep	mRNA	15770468	15775349	.	+	.	ID=Os02t0468400-01;Name=Os02t0468400-01;Locus_id=Os02g0468400;Note=Lipid-binding START domain containing protein.;Transcript_evidence=AK120593 (DDBJ%2C Best hit);ORF_evidence=NP_001151176.1 (RefSeq);InterPro=Lipid-binding START (IPR002913),START-like domain (IPR023393);NIAS_FLcDNA=J013146N04;Expression=AK120593;TENOR=Os02t0468400-01;KEGG=Os02t0468400-01
Chr02	irgsp1_rep	five_prime_UTR	15770468	15770496	.	+	.	Parent=Os02t0468400-01
Chr02	irgsp1_rep	CDS	15770497	15770801	.	+	0	Parent=Os02t0468400-01
Chr02	irgsp1_rep	CDS	15770906	15771056	.	+	1	Parent=Os02t0468400-01
Chr02	irgsp1_rep	CDS	15772132	15772392	.	+	0	Parent=Os02t0468400-01
Chr02	irgsp1_rep	CDS	15773067	15773148	.	+	0	Parent=Os02t0468400-01
Chr02	irgsp1_rep	CDS	15773802	15773995	.	+	2	Parent=Os02t0468400-01
Chr02	irgsp1_rep	CDS	15774485	15774799	.	+	0	Parent=Os02t0468400-01
Chr02	irgsp1_rep	three_prime_UTR	15774800	15775349	.	+	.	Parent=Os02t0468400-01
Chr02	irgsp1_rep	mRNA	15788412	15790443	.	+	.	ID=Os02t0468500-00;Name=Os02t0468500-00;Locus_id=Os02g0468500;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK374723 (DDBJ);ORF_evidence=NP_001046823.2 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os02t0468500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	15788412	15788473	.	+	.	Parent=Os02t0468500-00
Chr02	irgsp1_rep	CDS	15788474	15789994	.	+	0	Parent=Os02t0468500-00
Chr02	irgsp1_rep	three_prime_UTR	15789995	15790443	.	+	.	Parent=Os02t0468500-00
Chr02	irgsp1_rep	mRNA	15821535	15825974	.	-	.	ID=Os02t0468800-01;Name=Os02t0468800-01;Locus_id=Os02g0468800;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK066711 (DDBJ%2C Best hit);ORF_evidence=B8AHJ1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013075E10;Expression=AK066711;TENOR=Os02t0468800-01;KEGG=Os02t0468800-01
Chr02	irgsp1_rep	five_prime_UTR	15825902	15825974	.	-	.	Parent=Os02t0468800-01
Chr02	irgsp1_rep	CDS	15824090	15825901	.	-	0	Parent=Os02t0468800-01
Chr02	irgsp1_rep	three_prime_UTR	15823374	15824089	.	-	.	Parent=Os02t0468800-01
Chr02	irgsp1_rep	three_prime_UTR	15822320	15822476	.	-	.	Parent=Os02t0468800-01
Chr02	irgsp1_rep	three_prime_UTR	15821535	15822097	.	-	.	Parent=Os02t0468800-01
Chr02	irgsp1_rep	mRNA	15824336	15825888	.	+	.	ID=Os02t0468825-00;Name=Os02t0468825-00;Locus_id=Os02g0468825;Note=Hypothetical protein.;Transcript_evidence=tplb0021n11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0468825-00
Chr02	irgsp1_rep	five_prime_UTR	15824336	15824618	.	+	.	Parent=Os02t0468825-00
Chr02	irgsp1_rep	CDS	15824619	15824897	.	+	0	Parent=Os02t0468825-00
Chr02	irgsp1_rep	three_prime_UTR	15824898	15825007	.	+	.	Parent=Os02t0468825-00
Chr02	irgsp1_rep	three_prime_UTR	15825437	15825888	.	+	.	Parent=Os02t0468825-00
Chr02	irgsp1_rep	mRNA	15832214	15833052	.	+	.	ID=Os02t0469000-00;Name=Os02t0469000-00;Locus_id=Os02g0469000;Note=Conserved hypothetical protein.;Transcript_evidence=EU960634 (DDBJ);ORF_evidence=Q6K8H5 (UniProt);TENOR=Os02t0469000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	15832214	15832267	.	+	.	Parent=Os02t0469000-00
Chr02	irgsp1_rep	CDS	15832268	15833023	.	+	0	Parent=Os02t0469000-00
Chr02	irgsp1_rep	three_prime_UTR	15833024	15833052	.	+	.	Parent=Os02t0469000-00
Chr02	irgsp1_rep	mRNA	15836020	15856223	.	+	.	ID=Os02t0469200-01;Name=Os02t0469200-01;Locus_id=Os02g0469200;Note=Conserved hypothetical protein.;Transcript_evidence=AK066401 (DDBJ%2C Best hit);ORF_evidence=B9EZX4 (UniProt);NIAS_FLcDNA=J013063N21;TENOR=Os02t0469200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	15836020	15836159	.	+	.	Parent=Os02t0469200-01
Chr02	irgsp1_rep	CDS	15836160	15836225	.	+	0	Parent=Os02t0469200-01
Chr02	irgsp1_rep	CDS	15836325	15836457	.	+	0	Parent=Os02t0469200-01
Chr02	irgsp1_rep	CDS	15836553	15836624	.	+	2	Parent=Os02t0469200-01
Chr02	irgsp1_rep	CDS	15837483	15837584	.	+	2	Parent=Os02t0469200-01
Chr02	irgsp1_rep	CDS	15837679	15837847	.	+	2	Parent=Os02t0469200-01
Chr02	irgsp1_rep	CDS	15837972	15838070	.	+	1	Parent=Os02t0469200-01
Chr02	irgsp1_rep	CDS	15838506	15838655	.	+	1	Parent=Os02t0469200-01
Chr02	irgsp1_rep	CDS	15840353	15840362	.	+	1	Parent=Os02t0469200-01
Chr02	irgsp1_rep	three_prime_UTR	15840363	15840387	.	+	.	Parent=Os02t0469200-01
Chr02	irgsp1_rep	three_prime_UTR	15840850	15840907	.	+	.	Parent=Os02t0469200-01
Chr02	irgsp1_rep	three_prime_UTR	15842672	15842760	.	+	.	Parent=Os02t0469200-01
Chr02	irgsp1_rep	three_prime_UTR	15843515	15843613	.	+	.	Parent=Os02t0469200-01
Chr02	irgsp1_rep	three_prime_UTR	15843704	15843819	.	+	.	Parent=Os02t0469200-01
Chr02	irgsp1_rep	three_prime_UTR	15843903	15844021	.	+	.	Parent=Os02t0469200-01
Chr02	irgsp1_rep	three_prime_UTR	15847286	15847356	.	+	.	Parent=Os02t0469200-01
Chr02	irgsp1_rep	three_prime_UTR	15847933	15848035	.	+	.	Parent=Os02t0469200-01
Chr02	irgsp1_rep	three_prime_UTR	15848407	15848546	.	+	.	Parent=Os02t0469200-01
Chr02	irgsp1_rep	three_prime_UTR	15848753	15848911	.	+	.	Parent=Os02t0469200-01
Chr02	irgsp1_rep	three_prime_UTR	15848993	15849096	.	+	.	Parent=Os02t0469200-01
Chr02	irgsp1_rep	three_prime_UTR	15850591	15850766	.	+	.	Parent=Os02t0469200-01
Chr02	irgsp1_rep	three_prime_UTR	15852861	15853050	.	+	.	Parent=Os02t0469200-01
Chr02	irgsp1_rep	three_prime_UTR	15853922	15854021	.	+	.	Parent=Os02t0469200-01
Chr02	irgsp1_rep	three_prime_UTR	15854389	15854557	.	+	.	Parent=Os02t0469200-01
Chr02	irgsp1_rep	three_prime_UTR	15855126	15855208	.	+	.	Parent=Os02t0469200-01
Chr02	irgsp1_rep	three_prime_UTR	15855291	15855367	.	+	.	Parent=Os02t0469200-01
Chr02	irgsp1_rep	three_prime_UTR	15855604	15856223	.	+	.	Parent=Os02t0469200-01
Chr02	irgsp1_rep	mRNA	15847990	15856183	.	+	.	ID=Os02t0469200-02;Name=Os02t0469200-02;Locus_id=Os02g0469200;Note=Similar to predicted protein.;Transcript_evidence=AK061709 (DDBJ%2C Best hit);ORF_evidence=Q6K8H3 (UniProt);NIAS_FLcDNA=001-037-F12;Expression=AK061709;TENOR=Os02t0469200-02;KEGG=Os02t0469200-02
Chr02	irgsp1_rep	CDS	15847990	15848035	.	+	0	Parent=Os02t0469200-02
Chr02	irgsp1_rep	CDS	15848407	15848546	.	+	2	Parent=Os02t0469200-02
Chr02	irgsp1_rep	CDS	15848753	15848911	.	+	0	Parent=Os02t0469200-02
Chr02	irgsp1_rep	CDS	15848993	15849096	.	+	0	Parent=Os02t0469200-02
Chr02	irgsp1_rep	CDS	15850591	15850766	.	+	1	Parent=Os02t0469200-02
Chr02	irgsp1_rep	CDS	15852861	15853050	.	+	2	Parent=Os02t0469200-02
Chr02	irgsp1_rep	CDS	15853922	15854021	.	+	1	Parent=Os02t0469200-02
Chr02	irgsp1_rep	CDS	15854389	15854557	.	+	0	Parent=Os02t0469200-02
Chr02	irgsp1_rep	CDS	15855126	15855208	.	+	2	Parent=Os02t0469200-02
Chr02	irgsp1_rep	CDS	15855291	15855367	.	+	0	Parent=Os02t0469200-02
Chr02	irgsp1_rep	CDS	15855604	15855775	.	+	1	Parent=Os02t0469200-02
Chr02	irgsp1_rep	three_prime_UTR	15855776	15856183	.	+	.	Parent=Os02t0469200-02
Chr02	irgsp1_rep	mRNA	15838995	15839740	.	+	.	ID=Os02t0469250-00;Name=Os02t0469250-00;Locus_id=Os02g0469250;Note=Non-protein coding transcript.;Transcript_evidence=CT835455 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os02t0469250-00
Chr02	irgsp1_rep	exon	15838995	15839740	.	+	.	Parent=Os02t0469250-00
Chr02	irgsp1_rep	mRNA	15865332	15870103	.	+	.	ID=Os02t0469300-01;Name=Os02t0469300-01;Locus_id=Os02g0469300;CGSNL Gene Symbol=MORC4;CGSNL Gene Name=MICRORCHIDIA PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OsMORC4;Oryzabase Gene Name Synonym(s)=Microrchidia protein 4;Note=Similar to OSIGBa0148D14.7 protein.;Transcript_evidence=AK063552 (DDBJ%2C Best hit);ORF_evidence=Q01M14 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=ATPase-like%2C ATP-binding domain (IPR003594);NIAS_FLcDNA=001-117-E04;Oryzabase=22639;Expression=AK063552;TENOR=Os02t0469300-01;KEGG=Os02t0469300-01
Chr02	irgsp1_rep	five_prime_UTR	15865332	15865559	.	+	.	Parent=Os02t0469300-01
Chr02	irgsp1_rep	CDS	15865560	15865929	.	+	0	Parent=Os02t0469300-01
Chr02	irgsp1_rep	CDS	15866983	15867060	.	+	2	Parent=Os02t0469300-01
Chr02	irgsp1_rep	CDS	15867189	15867223	.	+	2	Parent=Os02t0469300-01
Chr02	irgsp1_rep	CDS	15867309	15867387	.	+	0	Parent=Os02t0469300-01
Chr02	irgsp1_rep	CDS	15867975	15868067	.	+	2	Parent=Os02t0469300-01
Chr02	irgsp1_rep	CDS	15868194	15868278	.	+	2	Parent=Os02t0469300-01
Chr02	irgsp1_rep	CDS	15868967	15869042	.	+	1	Parent=Os02t0469300-01
Chr02	irgsp1_rep	CDS	15869210	15869389	.	+	0	Parent=Os02t0469300-01
Chr02	irgsp1_rep	three_prime_UTR	15869390	15870103	.	+	.	Parent=Os02t0469300-01
Chr02	irgsp1_rep	mRNA	15865560	15876409	.	+	.	ID=Os02t0469300-02;Name=Os02t0469300-02;Locus_id=Os02g0469300;CGSNL Gene Symbol=MORC4;CGSNL Gene Name=MICRORCHIDIA PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OsMORC4;Oryzabase Gene Name Synonym(s)=Microrchidia protein 4;Note=ATP-binding region%2C ATPase-like domain containing protein.;Transcript_evidence=AK069003 (DDBJ%2C Best hit);ORF_evidence=Q01M14 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=ATPase-like%2C ATP-binding domain (IPR003594);NIAS_FLcDNA=J023003D17;Oryzabase=22639;Expression=AK069003;TENOR=Os02t0469300-02;KEGG=Os02t0469300-02
Chr02	irgsp1_rep	CDS	15865560	15865929	.	+	0	Parent=Os02t0469300-02
Chr02	irgsp1_rep	CDS	15866983	15867060	.	+	2	Parent=Os02t0469300-02
Chr02	irgsp1_rep	CDS	15867189	15867223	.	+	2	Parent=Os02t0469300-02
Chr02	irgsp1_rep	CDS	15867309	15867387	.	+	0	Parent=Os02t0469300-02
Chr02	irgsp1_rep	CDS	15867975	15868067	.	+	2	Parent=Os02t0469300-02
Chr02	irgsp1_rep	CDS	15868194	15868278	.	+	2	Parent=Os02t0469300-02
Chr02	irgsp1_rep	CDS	15868967	15869042	.	+	1	Parent=Os02t0469300-02
Chr02	irgsp1_rep	CDS	15869210	15869338	.	+	0	Parent=Os02t0469300-02
Chr02	irgsp1_rep	CDS	15869691	15869789	.	+	0	Parent=Os02t0469300-02
Chr02	irgsp1_rep	CDS	15869879	15869980	.	+	0	Parent=Os02t0469300-02
Chr02	irgsp1_rep	CDS	15870475	15870633	.	+	0	Parent=Os02t0469300-02
Chr02	irgsp1_rep	CDS	15870725	15870820	.	+	0	Parent=Os02t0469300-02
Chr02	irgsp1_rep	CDS	15871715	15871766	.	+	0	Parent=Os02t0469300-02
Chr02	irgsp1_rep	CDS	15872000	15872111	.	+	2	Parent=Os02t0469300-02
Chr02	irgsp1_rep	CDS	15872222	15872292	.	+	1	Parent=Os02t0469300-02
Chr02	irgsp1_rep	CDS	15872793	15873202	.	+	2	Parent=Os02t0469300-02
Chr02	irgsp1_rep	CDS	15873931	15874028	.	+	0	Parent=Os02t0469300-02
Chr02	irgsp1_rep	CDS	15874568	15874643	.	+	1	Parent=Os02t0469300-02
Chr02	irgsp1_rep	CDS	15875730	15875852	.	+	0	Parent=Os02t0469300-02
Chr02	irgsp1_rep	CDS	15875994	15876062	.	+	0	Parent=Os02t0469300-02
Chr02	irgsp1_rep	three_prime_UTR	15876063	15876409	.	+	.	Parent=Os02t0469300-02
Chr02	irgsp1_rep	mRNA	15891587	15895204	.	+	.	ID=Os02t0469600-01;Name=Os02t0469600-01;Locus_id=Os02g0469600;RAP-DB Gene Symbol Synonym(s)=OsACP1;RAP-DB Gene Name Synonym(s)=abiotic stress-induced cysteine proteinase 1;Oryzabase Gene Name Synonym(s)=cysteine proteinase 1;Note=Abiotic stress-induced cysteine proteinase%2C Abiotic stress response;Transcript_evidence=AK071907,AK061947,AK098908,AK099269,AK119670;ORF_evidence=Q6K7A3;GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Papain-like cysteine peptidase superfamily (IPR038765),Cathepsin propeptide inhibitor domain (I29) (IPR013201),Peptidase C1A%2C papain C-terminal (IPR000668),Papain-like cysteine endopeptidase (IPR039417),Cysteine peptidase%2C cysteine active site (IPR000169),Cysteine peptidase%2C histidine active site (IPR025660),Cysteine peptidase%2C asparagine active site (IPR025661);NIAS_FLcDNA=J013063O07,001-042-E05,J013002F17,J023020I09,002-149-H07;Manual Curation=April 1%2C 2020;Literature_PMID=32206999;Oryzabase=16017;TENOR=Os02t0469600-01;Subcellular location=cytoplasm (GO:0005737)
Chr02	irgsp1_rep	five_prime_UTR	15891587	15891635	.	+	.	Parent=Os02t0469600-01
Chr02	irgsp1_rep	CDS	15891636	15892106	.	+	0	Parent=Os02t0469600-01
Chr02	irgsp1_rep	CDS	15892225	15892344	.	+	0	Parent=Os02t0469600-01
Chr02	irgsp1_rep	CDS	15894250	15894493	.	+	0	Parent=Os02t0469600-01
Chr02	irgsp1_rep	CDS	15894606	15894892	.	+	2	Parent=Os02t0469600-01
Chr02	irgsp1_rep	three_prime_UTR	15894893	15895204	.	+	.	Parent=Os02t0469600-01
Chr02	irgsp1_rep	mRNA	15910692	15915571	.	+	.	ID=Os02t0469900-01;Name=Os02t0469900-01;Locus_id=Os02g0469900;Oryzabase Gene Symbol Synonym(s)=OsARID1%2C ARID1;Oryzabase Gene Name Synonym(s)=ARID transcription factor%2C AT-rich Interaction Domain-containing protein 1;Note=AT-rich interaction region domain containing protein.;Transcript_evidence=AK065847 (DDBJ%2C Best hit);ORF_evidence=NP_001147007.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=High mobility group%2C HMG1/HMG2 (IPR000910),ARID/BRIGHT DNA-binding domain (IPR001606),High mobility group%2C superfamily (IPR009071);NIAS_FLcDNA=J013042H05;Oryzabase=16197;Expression=AK065847;TENOR=Os02t0469900-01;KEGG=Os02t0469900-01
Chr02	irgsp1_rep	five_prime_UTR	15910692	15910795	.	+	.	Parent=Os02t0469900-01
Chr02	irgsp1_rep	five_prime_UTR	15911019	15911023	.	+	.	Parent=Os02t0469900-01
Chr02	irgsp1_rep	CDS	15911024	15911313	.	+	0	Parent=Os02t0469900-01
Chr02	irgsp1_rep	CDS	15912201	15912279	.	+	1	Parent=Os02t0469900-01
Chr02	irgsp1_rep	CDS	15912523	15912682	.	+	0	Parent=Os02t0469900-01
Chr02	irgsp1_rep	CDS	15912762	15912848	.	+	2	Parent=Os02t0469900-01
Chr02	irgsp1_rep	CDS	15914327	15914703	.	+	2	Parent=Os02t0469900-01
Chr02	irgsp1_rep	CDS	15914798	15915208	.	+	0	Parent=Os02t0469900-01
Chr02	irgsp1_rep	three_prime_UTR	15915209	15915571	.	+	.	Parent=Os02t0469900-01
Chr02	irgsp1_rep	mRNA	15910908	15915214	.	-	.	ID=Os02t0469950-00;Name=Os02t0469950-00;Locus_id=Os02g0469950;Note=Hypothetical protein.;Transcript_evidence=tplb0026h22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0469950-00
Chr02	irgsp1_rep	five_prime_UTR	15914781	15915214	.	-	.	Parent=Os02t0469950-00
Chr02	irgsp1_rep	five_prime_UTR	15914319	15914689	.	-	.	Parent=Os02t0469950-00
Chr02	irgsp1_rep	five_prime_UTR	15912746	15912842	.	-	.	Parent=Os02t0469950-00
Chr02	irgsp1_rep	five_prime_UTR	15912521	15912679	.	-	.	Parent=Os02t0469950-00
Chr02	irgsp1_rep	five_prime_UTR	15912238	15912277	.	-	.	Parent=Os02t0469950-00
Chr02	irgsp1_rep	CDS	15912201	15912237	.	-	0	Parent=Os02t0469950-00
Chr02	irgsp1_rep	CDS	15911189	15911313	.	-	2	Parent=Os02t0469950-00
Chr02	irgsp1_rep	CDS	15910964	15911125	.	-	0	Parent=Os02t0469950-00
Chr02	irgsp1_rep	three_prime_UTR	15910908	15910963	.	-	.	Parent=Os02t0469950-00
Chr02	irgsp1_rep	mRNA	15916082	15919906	.	-	.	ID=Os02t0470000-01;Name=Os02t0470000-01;Locus_id=Os02g0470000;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK120602 (DDBJ%2C Best hit);ORF_evidence=A2X4P4 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013149K24;Expression=AK120602;TENOR=Os02t0470000-01;KEGG=Os02t0470000-01
Chr02	irgsp1_rep	five_prime_UTR	15919818	15919906	.	-	.	Parent=Os02t0470000-01
Chr02	irgsp1_rep	CDS	15917868	15919817	.	-	0	Parent=Os02t0470000-01
Chr02	irgsp1_rep	three_prime_UTR	15917318	15917867	.	-	.	Parent=Os02t0470000-01
Chr02	irgsp1_rep	three_prime_UTR	15917031	15917186	.	-	.	Parent=Os02t0470000-01
Chr02	irgsp1_rep	three_prime_UTR	15916082	15916444	.	-	.	Parent=Os02t0470000-01
Chr02	irgsp1_rep	mRNA	15918635	15919882	.	+	.	ID=Os02t0470100-00;Name=Os02t0470100-00;Locus_id=Os02g0470100;Note=Hypothetical protein.;Transcript_evidence=tplb0024g14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0470100-00
Chr02	irgsp1_rep	five_prime_UTR	15918635	15919359	.	+	.	Parent=Os02t0470100-00
Chr02	irgsp1_rep	five_prime_UTR	15919473	15919527	.	+	.	Parent=Os02t0470100-00
Chr02	irgsp1_rep	CDS	15919528	15919882	.	+	0	Parent=Os02t0470100-00
Chr02	irgsp1_rep	mRNA	15932300	15934481	.	-	.	ID=Os02t0470400-00;Name=Os02t0470400-00;Locus_id=Os02g0470400;Note=Similar to predicted protein.;Transcript_evidence=EU964631 (DDBJ);ORF_evidence=XP_002894095.1 (RefSeq);TENOR=Os02t0470400-00;KEGG=Os02t0470400-00
Chr02	irgsp1_rep	CDS	15934339	15934481	.	-	0	Parent=Os02t0470400-00
Chr02	irgsp1_rep	CDS	15934137	15934263	.	-	1	Parent=Os02t0470400-00
Chr02	irgsp1_rep	CDS	15933700	15933921	.	-	0	Parent=Os02t0470400-00
Chr02	irgsp1_rep	CDS	15933252	15933608	.	-	0	Parent=Os02t0470400-00
Chr02	irgsp1_rep	CDS	15933008	15933166	.	-	0	Parent=Os02t0470400-00
Chr02	irgsp1_rep	CDS	15932652	15932933	.	-	0	Parent=Os02t0470400-00
Chr02	irgsp1_rep	CDS	15932300	15932383	.	-	0	Parent=Os02t0470400-00
Chr02	irgsp1_rep	mRNA	15950021	15975575	.	-	.	ID=Os02t0470600-00;Name=Os02t0470600-00;Locus_id=Os02g0470600;Note=Similar to phosphoinositide binding.;Transcript_evidence=AK368692 (DDBJ);ORF_evidence=NP_849783.4 (RefSeq);TENOR=Os02t0470600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	15975537	15975575	.	-	.	Parent=Os02t0470600-00
Chr02	irgsp1_rep	CDS	15975522	15975536	.	-	0	Parent=Os02t0470600-00
Chr02	irgsp1_rep	CDS	15974182	15974263	.	-	0	Parent=Os02t0470600-00
Chr02	irgsp1_rep	CDS	15972648	15972751	.	-	2	Parent=Os02t0470600-00
Chr02	irgsp1_rep	CDS	15971799	15971894	.	-	0	Parent=Os02t0470600-00
Chr02	irgsp1_rep	CDS	15971646	15971693	.	-	0	Parent=Os02t0470600-00
Chr02	irgsp1_rep	CDS	15969607	15969660	.	-	0	Parent=Os02t0470600-00
Chr02	irgsp1_rep	CDS	15968079	15968182	.	-	0	Parent=Os02t0470600-00
Chr02	irgsp1_rep	CDS	15967878	15967995	.	-	1	Parent=Os02t0470600-00
Chr02	irgsp1_rep	CDS	15966212	15966313	.	-	0	Parent=Os02t0470600-00
Chr02	irgsp1_rep	CDS	15965944	15966132	.	-	0	Parent=Os02t0470600-00
Chr02	irgsp1_rep	CDS	15965706	15965863	.	-	0	Parent=Os02t0470600-00
Chr02	irgsp1_rep	CDS	15963982	15964140	.	-	1	Parent=Os02t0470600-00
Chr02	irgsp1_rep	CDS	15963789	15963881	.	-	1	Parent=Os02t0470600-00
Chr02	irgsp1_rep	CDS	15961167	15961518	.	-	1	Parent=Os02t0470600-00
Chr02	irgsp1_rep	CDS	15960614	15960727	.	-	0	Parent=Os02t0470600-00
Chr02	irgsp1_rep	CDS	15960332	15960431	.	-	0	Parent=Os02t0470600-00
Chr02	irgsp1_rep	CDS	15960181	15960200	.	-	2	Parent=Os02t0470600-00
Chr02	irgsp1_rep	three_prime_UTR	15960139	15960180	.	-	.	Parent=Os02t0470600-00
Chr02	irgsp1_rep	three_prime_UTR	15959669	15959789	.	-	.	Parent=Os02t0470600-00
Chr02	irgsp1_rep	three_prime_UTR	15959393	15959599	.	-	.	Parent=Os02t0470600-00
Chr02	irgsp1_rep	three_prime_UTR	15958076	15958303	.	-	.	Parent=Os02t0470600-00
Chr02	irgsp1_rep	three_prime_UTR	15957870	15957979	.	-	.	Parent=Os02t0470600-00
Chr02	irgsp1_rep	three_prime_UTR	15957316	15957412	.	-	.	Parent=Os02t0470600-00
Chr02	irgsp1_rep	three_prime_UTR	15955135	15955233	.	-	.	Parent=Os02t0470600-00
Chr02	irgsp1_rep	three_prime_UTR	15954909	15955046	.	-	.	Parent=Os02t0470600-00
Chr02	irgsp1_rep	three_prime_UTR	15954700	15954765	.	-	.	Parent=Os02t0470600-00
Chr02	irgsp1_rep	three_prime_UTR	15950021	15950109	.	-	.	Parent=Os02t0470600-00
Chr02	irgsp1_rep	mRNA	16000163	16001186	.	-	.	ID=Os02t0471100-01;Name=Os02t0471100-01;Locus_id=Os02g0471100;Note=Conserved hypothetical protein.;Transcript_evidence=AK121179 (DDBJ%2C Best hit);ORF_evidence=B8AHJ7 (UniProt);NIAS_FLcDNA=J023083J24;Expression=AK121179;TENOR=Os02t0471100-01;KEGG=Os02t0471100-01
Chr02	irgsp1_rep	five_prime_UTR	16001027	16001186	.	-	.	Parent=Os02t0471100-01
Chr02	irgsp1_rep	CDS	16000601	16001026	.	-	0	Parent=Os02t0471100-01
Chr02	irgsp1_rep	three_prime_UTR	16000163	16000600	.	-	.	Parent=Os02t0471100-01
Chr02	irgsp1_rep	mRNA	16002036	16004952	.	+	.	ID=Os02t0471300-01;Name=Os02t0471300-01;Locus_id=Os02g0471300;Note=Monooxygenase%2C FAD-binding domain containing protein.;Transcript_evidence=AK110913 (DDBJ%2C Best hit);ORF_evidence=A2X4Q0 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Monooxygenase%2C FAD-binding (IPR002938),Aromatic-ring hydroxylase-like (IPR003042);NIAS_FLcDNA=002-173-C04;Expression=AK110913;TENOR=Os02t0471300-01;KEGG=Os02t0471300-01
Chr02	irgsp1_rep	five_prime_UTR	16002036	16002078	.	+	.	Parent=Os02t0471300-01
Chr02	irgsp1_rep	CDS	16002079	16002173	.	+	0	Parent=Os02t0471300-01
Chr02	irgsp1_rep	CDS	16002444	16002590	.	+	1	Parent=Os02t0471300-01
Chr02	irgsp1_rep	CDS	16002683	16002733	.	+	1	Parent=Os02t0471300-01
Chr02	irgsp1_rep	CDS	16002835	16003000	.	+	1	Parent=Os02t0471300-01
Chr02	irgsp1_rep	CDS	16003273	16003501	.	+	0	Parent=Os02t0471300-01
Chr02	irgsp1_rep	CDS	16004285	16004856	.	+	2	Parent=Os02t0471300-01
Chr02	irgsp1_rep	three_prime_UTR	16004857	16004952	.	+	.	Parent=Os02t0471300-01
Chr02	irgsp1_rep	mRNA	16009727	16014282	.	-	.	ID=Os02t0471500-01;Name=Os02t0471500-01;Locus_id=Os02g0471500;Oryzabase Gene Symbol Synonym(s)=OsPP2C14%2C PP2C14%2C OsPP24;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C14%2C protein phosphatase 2C 14%2C protein phosphatase 24;Note=Protein phosphatase 2C domain containing protein.;Transcript_evidence=AK120927 (DDBJ%2C Best hit);ORF_evidence=B6SV25 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J023035P10;Oryzabase=17890;Expression=AK120927;TENOR=Os02t0471500-01;KEGG=Os02t0471500-01
Chr02	irgsp1_rep	five_prime_UTR	16014031	16014282	.	-	.	Parent=Os02t0471500-01
Chr02	irgsp1_rep	CDS	16013581	16014030	.	-	0	Parent=Os02t0471500-01
Chr02	irgsp1_rep	CDS	16012065	16012421	.	-	0	Parent=Os02t0471500-01
Chr02	irgsp1_rep	CDS	16011818	16011935	.	-	0	Parent=Os02t0471500-01
Chr02	irgsp1_rep	CDS	16010560	16010783	.	-	2	Parent=Os02t0471500-01
Chr02	irgsp1_rep	CDS	16010072	16010479	.	-	0	Parent=Os02t0471500-01
Chr02	irgsp1_rep	three_prime_UTR	16009727	16010071	.	-	.	Parent=Os02t0471500-01
Chr02	irgsp1_rep	mRNA	16009761	16014180	.	-	.	ID=Os02t0471500-02;Name=Os02t0471500-02;Locus_id=Os02g0471500;Oryzabase Gene Symbol Synonym(s)=OsPP2C14%2C PP2C14%2C OsPP24;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C14%2C protein phosphatase 2C 14%2C protein phosphatase 24;Note=Protein phosphatase 2C domain containing protein.;Transcript_evidence=AK120615 (DDBJ%2C Best hit);ORF_evidence=B6SV25 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J013151P21;Oryzabase=17890;Expression=AK120615;TENOR=Os02t0471500-02;KEGG=Os02t0471500-02
Chr02	irgsp1_rep	five_prime_UTR	16014031	16014180	.	-	.	Parent=Os02t0471500-02
Chr02	irgsp1_rep	CDS	16013581	16014030	.	-	0	Parent=Os02t0471500-02
Chr02	irgsp1_rep	CDS	16012065	16012421	.	-	0	Parent=Os02t0471500-02
Chr02	irgsp1_rep	CDS	16011818	16011935	.	-	0	Parent=Os02t0471500-02
Chr02	irgsp1_rep	CDS	16010560	16010783	.	-	2	Parent=Os02t0471500-02
Chr02	irgsp1_rep	CDS	16010072	16010479	.	-	0	Parent=Os02t0471500-02
Chr02	irgsp1_rep	three_prime_UTR	16009761	16010071	.	-	.	Parent=Os02t0471500-02
Chr02	irgsp1_rep	mRNA	16009711	16011926	.	-	.	ID=Os02t0471500-03;Name=Os02t0471500-03;Locus_id=Os02g0471500;Oryzabase Gene Symbol Synonym(s)=OsPP2C14%2C PP2C14%2C OsPP24;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C14%2C protein phosphatase 2C 14%2C protein phosphatase 24;Note=Similar to protein phosphatase 2C containing protein.;Transcript_evidence=AK060101 (DDBJ%2C Best hit);ORF_evidence=B6SV25 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=006-308-A02;Oryzabase=17890;Expression=AK060101;TENOR=Os02t0471500-03;KEGG=Os02t0471500-03
Chr02	irgsp1_rep	CDS	16011818	16011926	.	-	0	Parent=Os02t0471500-03
Chr02	irgsp1_rep	CDS	16010560	16010783	.	-	2	Parent=Os02t0471500-03
Chr02	irgsp1_rep	CDS	16010072	16010479	.	-	0	Parent=Os02t0471500-03
Chr02	irgsp1_rep	three_prime_UTR	16009711	16010071	.	-	.	Parent=Os02t0471500-03
Chr02	irgsp1_rep	mRNA	16066475	16067196	.	-	.	ID=Os02t0472200-00;Name=Os02t0472200-00;Locus_id=Os02g0472200;Note=Hypothetical conserved gene.;Transcript_evidence=CU405578 (DDBJ%2C Secondary hit);ORF_evidence=B9EZY4 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase C48%2C SUMO/Sentrin/Ubl1 (IPR003653);TENOR=Os02t0472200-00;KEGG=Os02t0472200-00
Chr02	irgsp1_rep	five_prime_UTR	16067189	16067196	.	-	.	Parent=Os02t0472200-00
Chr02	irgsp1_rep	CDS	16066883	16067188	.	-	0	Parent=Os02t0472200-00
Chr02	irgsp1_rep	CDS	16066583	16066789	.	-	0	Parent=Os02t0472200-00
Chr02	irgsp1_rep	three_prime_UTR	16066475	16066582	.	-	.	Parent=Os02t0472200-00
Chr02	irgsp1_rep	mRNA	16082576	16086172	.	+	.	ID=Os02t0472500-00;Name=Os02t0472500-00;Locus_id=Os02g0472500;Note=Similar to Pathogenesis-related protein PR1c.;Transcript_evidence=BT041183 (DDBJ);ORF_evidence=A0N0C3 (UniProt);InterPro=Allergen V5/Tpx-1-related (IPR001283),Ves allergen (IPR002413),CAP domain (IPR014044);TENOR=Os02t0472500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	16082576	16083101	.	+	0	Parent=Os02t0472500-00
Chr02	irgsp1_rep	CDS	16086009	16086172	.	+	2	Parent=Os02t0472500-00
Chr02	irgsp1_rep	mRNA	16084509	16091031	.	+	.	ID=Os02t0472566-00;Name=Os02t0472566-00;Locus_id=Os02g0472566;Note=Allergen V5/Tpx-1-related domain containing protein.;Transcript_evidence=EU966479 (DDBJ);ORF_evidence=NP_001172960.1 (RefSeq);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Allergen V5/Tpx-1-related (IPR001283),CAP domain (IPR014044),Allergen V5/Tpx-1-related%2C conserved site (IPR018244);TENOR=Os02t0472566-00
Chr02	irgsp1_rep	five_prime_UTR	16084509	16084558	.	+	.	Parent=Os02t0472566-00
Chr02	irgsp1_rep	CDS	16084559	16084756	.	+	0	Parent=Os02t0472566-00
Chr02	irgsp1_rep	CDS	16090609	16091031	.	+	0	Parent=Os02t0472566-00
Chr02	irgsp1_rep	mRNA	16091726	16094120	.	+	.	ID=Os02t0472700-00;Name=Os02t0472700-00;Locus_id=Os02g0472700;Note=Similar to receptor-like serine-threonine protein kinase.;Transcript_evidence=BT062568 (DDBJ);ORF_evidence=NP_001147287.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os02t0472700-00
Chr02	irgsp1_rep	five_prime_UTR	16091726	16091726	.	+	.	Parent=Os02t0472700-00
Chr02	irgsp1_rep	CDS	16091727	16091861	.	+	0	Parent=Os02t0472700-00
Chr02	irgsp1_rep	CDS	16092300	16092510	.	+	0	Parent=Os02t0472700-00
Chr02	irgsp1_rep	CDS	16093004	16093241	.	+	2	Parent=Os02t0472700-00
Chr02	irgsp1_rep	CDS	16093347	16093497	.	+	1	Parent=Os02t0472700-00
Chr02	irgsp1_rep	CDS	16093812	16094120	.	+	0	Parent=Os02t0472700-00
Chr02	irgsp1_rep	mRNA	16104779	16110335	.	-	.	ID=Os02t0473000-01;Name=Os02t0473000-01;Locus_id=Os02g0473000;Note=Riboflavin biosynthesis protein RibD family protein.;Transcript_evidence=AK065460 (DDBJ%2C Best hit);ORF_evidence=NP_190323.1 (RefSeq);GO=Biological Process: riboflavin biosynthetic process (GO:0009231),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: 5-amino-6-(5-phosphoribosylamino)uracil reductase activity (GO:0008703),Molecular Function: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity (GO:0008835),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: NADP binding (GO:0050661);InterPro=Bacterial bifunctional deaminase-reductase%2C C-terminal (IPR002734),Riboflavin biosynthesis protein RibD (IPR004794),Riboflavin-specific deaminase%2C C-terminal (IPR011549),Conserved hypothetical protein CHP02464 (IPR012816),Dihydrofolate reductase-like domain (IPR024072);NIAS_FLcDNA=J013024H13;Expression=AK065460;TENOR=Os02t0473000-01;KEGG=Os02t0473000-01
Chr02	irgsp1_rep	five_prime_UTR	16110334	16110335	.	-	.	Parent=Os02t0473000-01
Chr02	irgsp1_rep	CDS	16110289	16110333	.	-	0	Parent=Os02t0473000-01
Chr02	irgsp1_rep	CDS	16109780	16109914	.	-	0	Parent=Os02t0473000-01
Chr02	irgsp1_rep	CDS	16108799	16108898	.	-	0	Parent=Os02t0473000-01
Chr02	irgsp1_rep	CDS	16108568	16108693	.	-	2	Parent=Os02t0473000-01
Chr02	irgsp1_rep	CDS	16108165	16108478	.	-	2	Parent=Os02t0473000-01
Chr02	irgsp1_rep	CDS	16107586	16107705	.	-	0	Parent=Os02t0473000-01
Chr02	irgsp1_rep	CDS	16106941	16107186	.	-	0	Parent=Os02t0473000-01
Chr02	irgsp1_rep	CDS	16106660	16106785	.	-	0	Parent=Os02t0473000-01
Chr02	irgsp1_rep	CDS	16104924	16105184	.	-	0	Parent=Os02t0473000-01
Chr02	irgsp1_rep	three_prime_UTR	16104779	16104923	.	-	.	Parent=Os02t0473000-01
Chr02	irgsp1_rep	mRNA	16104693	16107707	.	-	.	ID=Os02t0473000-02;Name=Os02t0473000-02;Locus_id=Os02g0473000;Note=Similar to cDNA clone:J013024H13%2C full insert sequence.;Transcript_evidence=AK058742 (DDBJ%2C Best hit);ORF_evidence=B7EAY1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Conserved hypothetical protein CHP02464 (IPR012816),Dihydrofolate reductase-like domain (IPR024072);NIAS_FLcDNA=001-019-G09;Expression=AK058742;TENOR=Os02t0473000-02;KEGG=Os02t0473000-02
Chr02	irgsp1_rep	five_prime_UTR	16107706	16107707	.	-	.	Parent=Os02t0473000-02
Chr02	irgsp1_rep	CDS	16107586	16107705	.	-	0	Parent=Os02t0473000-02
Chr02	irgsp1_rep	CDS	16106941	16107186	.	-	0	Parent=Os02t0473000-02
Chr02	irgsp1_rep	CDS	16106660	16106785	.	-	0	Parent=Os02t0473000-02
Chr02	irgsp1_rep	CDS	16104924	16105184	.	-	0	Parent=Os02t0473000-02
Chr02	irgsp1_rep	three_prime_UTR	16104693	16104923	.	-	.	Parent=Os02t0473000-02
Chr02	irgsp1_rep	mRNA	16114955	16120438	.	-	.	ID=Os02t0473200-01;Name=Os02t0473200-01;Locus_id=Os02g0473200;Oryzabase Gene Symbol Synonym(s)=OsAP19;Oryzabase Gene Name Synonym(s)=aspartic protease 19;Note=Peptidase aspartic%2C catalytic domain containing protein.;Transcript_evidence=AK101185 (DDBJ%2C Best hit);ORF_evidence=Q01KZ0 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J033029J01;Oryzabase=13455;Expression=AK101185;TENOR=Os02t0473200-01;KEGG=Os02t0473200-01
Chr02	irgsp1_rep	five_prime_UTR	16120264	16120438	.	-	.	Parent=Os02t0473200-01
Chr02	irgsp1_rep	CDS	16120001	16120263	.	-	0	Parent=Os02t0473200-01
Chr02	irgsp1_rep	CDS	16119769	16119898	.	-	1	Parent=Os02t0473200-01
Chr02	irgsp1_rep	CDS	16119424	16119671	.	-	0	Parent=Os02t0473200-01
Chr02	irgsp1_rep	CDS	16119059	16119283	.	-	1	Parent=Os02t0473200-01
Chr02	irgsp1_rep	CDS	16116562	16116724	.	-	1	Parent=Os02t0473200-01
Chr02	irgsp1_rep	CDS	16116406	16116476	.	-	0	Parent=Os02t0473200-01
Chr02	irgsp1_rep	CDS	16116202	16116292	.	-	1	Parent=Os02t0473200-01
Chr02	irgsp1_rep	CDS	16115736	16115811	.	-	0	Parent=Os02t0473200-01
Chr02	irgsp1_rep	CDS	16115540	16115611	.	-	2	Parent=Os02t0473200-01
Chr02	irgsp1_rep	CDS	16115250	16115395	.	-	2	Parent=Os02t0473200-01
Chr02	irgsp1_rep	three_prime_UTR	16114955	16115249	.	-	.	Parent=Os02t0473200-01
Chr02	irgsp1_rep	mRNA	16118651	16120437	.	-	.	ID=Os02t0473200-02;Name=Os02t0473200-02;Locus_id=Os02g0473200;Oryzabase Gene Symbol Synonym(s)=OsAP19;Oryzabase Gene Name Synonym(s)=aspartic protease 19;Note=Similar to OSIGBa0137O04.7 protein.;Transcript_evidence=AK109641 (DDBJ%2C Best hit);ORF_evidence=Q01KZ0 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=002-138-E12;Oryzabase=13455;Expression=AK109641;TENOR=Os02t0473200-02;KEGG=Os02t0473200-02
Chr02	irgsp1_rep	five_prime_UTR	16120264	16120437	.	-	.	Parent=Os02t0473200-02
Chr02	irgsp1_rep	CDS	16120001	16120263	.	-	0	Parent=Os02t0473200-02
Chr02	irgsp1_rep	CDS	16119769	16119898	.	-	1	Parent=Os02t0473200-02
Chr02	irgsp1_rep	CDS	16119424	16119671	.	-	0	Parent=Os02t0473200-02
Chr02	irgsp1_rep	CDS	16119031	16119283	.	-	1	Parent=Os02t0473200-02
Chr02	irgsp1_rep	three_prime_UTR	16118651	16119030	.	-	.	Parent=Os02t0473200-02
Chr02	irgsp1_rep	mRNA	16114933	16116561	.	-	.	ID=Os02t0473200-03;Name=Os02t0473200-03;Locus_id=Os02g0473200;Oryzabase Gene Symbol Synonym(s)=OsAP19;Oryzabase Gene Name Synonym(s)=aspartic protease 19;Note=Hypothetical conserved gene.;Transcript_evidence=AK071189 (DDBJ%2C Best hit);ORF_evidence=Q6K6I1 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase aspartic%2C catalytic (IPR009007);NIAS_FLcDNA=J023086G16;Oryzabase=13455;Expression=AK071189;TENOR=Os02t0473200-03;KEGG=Os02t0473200-03
Chr02	irgsp1_rep	five_prime_UTR	16116406	16116561	.	-	.	Parent=Os02t0473200-03
Chr02	irgsp1_rep	five_prime_UTR	16115763	16116292	.	-	.	Parent=Os02t0473200-03
Chr02	irgsp1_rep	CDS	16115514	16115762	.	-	0	Parent=Os02t0473200-03
Chr02	irgsp1_rep	three_prime_UTR	16114933	16115513	.	-	.	Parent=Os02t0473200-03
Chr02	irgsp1_rep	mRNA	16150047	16152871	.	+	.	ID=Os02t0474000-01;Name=Os02t0474000-01;Locus_id=Os02g0474000;Oryzabase Gene Symbol Synonym(s)=OsFbox088%2C OsFbox88%2C Os_F0475;Oryzabase Gene Name Synonym(s)=F-box protein 88;Note=F-box associated interaction domain domain containing protein.;Transcript_evidence=AK100540 (DDBJ%2C Best hit),AK066609 (DDBJ%2C Best hit);ORF_evidence=A3A6S5 (UniProt);InterPro=F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023102H11,J013073O12;Oryzabase=16883;TENOR=Os02t0474000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	16150047	16151499	.	+	.	Parent=Os02t0474000-01
Chr02	irgsp1_rep	CDS	16151500	16152675	.	+	0	Parent=Os02t0474000-01
Chr02	irgsp1_rep	three_prime_UTR	16152676	16152871	.	+	.	Parent=Os02t0474000-01
Chr02	irgsp1_rep	mRNA	16172700	16180335	.	+	.	ID=Os02t0474300-01;Name=Os02t0474300-01;Locus_id=Os02g0474300;Note=Similar to DNA topoisomerase.;Transcript_evidence=AK122152 (DDBJ%2C Best hit);ORF_evidence=B9EZZ0 (UniProt);GO=Biological Process: DNA topological change (GO:0006265),Cellular Component: Chromosome (GO:0005694),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA topoisomerase activity (GO:0003916);InterPro=DNA topoisomerase%2C type IA%2C central region%2C subdomain 3 (IPR013826);NIAS_FLcDNA=J033143C09;TENOR=Os02t0474300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	16172700	16172824	.	+	.	Parent=Os02t0474300-01
Chr02	irgsp1_rep	CDS	16172825	16173154	.	+	0	Parent=Os02t0474300-01
Chr02	irgsp1_rep	three_prime_UTR	16173155	16174244	.	+	.	Parent=Os02t0474300-01
Chr02	irgsp1_rep	three_prime_UTR	16174543	16174626	.	+	.	Parent=Os02t0474300-01
Chr02	irgsp1_rep	three_prime_UTR	16174754	16174837	.	+	.	Parent=Os02t0474300-01
Chr02	irgsp1_rep	three_prime_UTR	16174969	16175808	.	+	.	Parent=Os02t0474300-01
Chr02	irgsp1_rep	three_prime_UTR	16176164	16176235	.	+	.	Parent=Os02t0474300-01
Chr02	irgsp1_rep	three_prime_UTR	16177175	16177282	.	+	.	Parent=Os02t0474300-01
Chr02	irgsp1_rep	three_prime_UTR	16178380	16178456	.	+	.	Parent=Os02t0474300-01
Chr02	irgsp1_rep	three_prime_UTR	16178609	16178692	.	+	.	Parent=Os02t0474300-01
Chr02	irgsp1_rep	three_prime_UTR	16178835	16178946	.	+	.	Parent=Os02t0474300-01
Chr02	irgsp1_rep	three_prime_UTR	16179029	16179118	.	+	.	Parent=Os02t0474300-01
Chr02	irgsp1_rep	three_prime_UTR	16179230	16179295	.	+	.	Parent=Os02t0474300-01
Chr02	irgsp1_rep	three_prime_UTR	16179381	16180335	.	+	.	Parent=Os02t0474300-01
Chr02	irgsp1_rep	mRNA	16208349	16215978	.	+	.	ID=Os02t0474700-01;Name=Os02t0474700-01;Locus_id=Os02g0474700;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK068629 (DDBJ%2C Best hit);ORF_evidence=Q01KY9 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013153G19;Expression=AK068629;TENOR=Os02t0474700-01;KEGG=Os02t0474700-01
Chr02	irgsp1_rep	CDS	16208349	16208418	.	+	0	Parent=Os02t0474700-01
Chr02	irgsp1_rep	CDS	16208587	16208710	.	+	2	Parent=Os02t0474700-01
Chr02	irgsp1_rep	CDS	16208826	16209006	.	+	1	Parent=Os02t0474700-01
Chr02	irgsp1_rep	CDS	16210126	16210283	.	+	0	Parent=Os02t0474700-01
Chr02	irgsp1_rep	CDS	16210371	16210414	.	+	1	Parent=Os02t0474700-01
Chr02	irgsp1_rep	CDS	16210494	16210612	.	+	2	Parent=Os02t0474700-01
Chr02	irgsp1_rep	CDS	16210692	16210890	.	+	0	Parent=Os02t0474700-01
Chr02	irgsp1_rep	CDS	16211660	16211791	.	+	2	Parent=Os02t0474700-01
Chr02	irgsp1_rep	CDS	16212653	16212756	.	+	2	Parent=Os02t0474700-01
Chr02	irgsp1_rep	CDS	16212859	16213038	.	+	0	Parent=Os02t0474700-01
Chr02	irgsp1_rep	CDS	16214218	16214357	.	+	0	Parent=Os02t0474700-01
Chr02	irgsp1_rep	CDS	16214443	16214582	.	+	1	Parent=Os02t0474700-01
Chr02	irgsp1_rep	CDS	16214718	16214878	.	+	2	Parent=Os02t0474700-01
Chr02	irgsp1_rep	CDS	16215115	16215238	.	+	0	Parent=Os02t0474700-01
Chr02	irgsp1_rep	CDS	16215322	16215473	.	+	2	Parent=Os02t0474700-01
Chr02	irgsp1_rep	three_prime_UTR	16215474	16215978	.	+	.	Parent=Os02t0474700-01
Chr02	irgsp1_rep	mRNA	16242898	16243417	.	+	.	ID=Os02t0475101-00;Name=Os02t0475101-00;Locus_id=Os02g0475101;Note=Similar to RING-H2 finger protein ATL5A.;Transcript_evidence=EU953643 (DDBJ);ORF_evidence=NP_001151367.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os02t0475101-00
Chr02	irgsp1_rep	five_prime_UTR	16242898	16243003	.	+	.	Parent=Os02t0475101-00
Chr02	irgsp1_rep	CDS	16243004	16243417	.	+	0	Parent=Os02t0475101-00
Chr02	irgsp1_rep	mRNA	16259553	16264489	.	+	.	ID=Os02t0475300-01;Name=Os02t0475300-01;Locus_id=Os02g0475300;Note=Membrane attack complex component/perforin/complement C9 family protein.;Transcript_evidence=AK120516 (DDBJ%2C Best hit);ORF_evidence=NP_001148060.1 (RefSeq);InterPro=Membrane attack complex component/perforin (MACPF) domain (IPR020864);NIAS_FLcDNA=J013124C02;Expression=AK120516;TENOR=Os02t0475300-01;KEGG=Os02t0475300-01
Chr02	irgsp1_rep	five_prime_UTR	16259553	16259732	.	+	.	Parent=Os02t0475300-01
Chr02	irgsp1_rep	CDS	16259733	16259981	.	+	0	Parent=Os02t0475300-01
Chr02	irgsp1_rep	CDS	16261580	16261818	.	+	0	Parent=Os02t0475300-01
Chr02	irgsp1_rep	CDS	16262046	16262247	.	+	1	Parent=Os02t0475300-01
Chr02	irgsp1_rep	CDS	16262326	16262406	.	+	0	Parent=Os02t0475300-01
Chr02	irgsp1_rep	CDS	16262490	16262673	.	+	0	Parent=Os02t0475300-01
Chr02	irgsp1_rep	CDS	16262843	16263009	.	+	2	Parent=Os02t0475300-01
Chr02	irgsp1_rep	CDS	16263238	16264020	.	+	0	Parent=Os02t0475300-01
Chr02	irgsp1_rep	three_prime_UTR	16264021	16264489	.	+	.	Parent=Os02t0475300-01
Chr02	irgsp1_rep	mRNA	16259612	16263209	.	+	.	ID=Os02t0475300-02;Name=Os02t0475300-02;Locus_id=Os02g0475300;Note=Similar to MAC/Perforin domain containing protein.;Transcript_evidence=AK072737 (DDBJ%2C Best hit);ORF_evidence=NP_001148060.1 (RefSeq);InterPro=Membrane attack complex component/perforin (MACPF) domain (IPR020864);NIAS_FLcDNA=J023143O05;Expression=AK072737;TENOR=Os02t0475300-02;KEGG=Os02t0475300-02
Chr02	irgsp1_rep	five_prime_UTR	16259612	16259732	.	+	.	Parent=Os02t0475300-02
Chr02	irgsp1_rep	CDS	16259733	16259981	.	+	0	Parent=Os02t0475300-02
Chr02	irgsp1_rep	CDS	16261580	16261818	.	+	0	Parent=Os02t0475300-02
Chr02	irgsp1_rep	CDS	16262046	16262247	.	+	1	Parent=Os02t0475300-02
Chr02	irgsp1_rep	CDS	16262326	16262406	.	+	0	Parent=Os02t0475300-02
Chr02	irgsp1_rep	CDS	16262490	16262673	.	+	0	Parent=Os02t0475300-02
Chr02	irgsp1_rep	CDS	16262843	16263108	.	+	2	Parent=Os02t0475300-02
Chr02	irgsp1_rep	three_prime_UTR	16263109	16263209	.	+	.	Parent=Os02t0475300-02
Chr02	irgsp1_rep	mRNA	16261511	16264323	.	+	.	ID=Os02t0475300-03;Name=Os02t0475300-03;Locus_id=Os02g0475300;Note=Similar to MAC/Perforin domain containing protein.;Transcript_evidence=AK105639 (DDBJ%2C Best hit);ORF_evidence=NP_001148060.1 (RefSeq);InterPro=Membrane attack complex component/perforin (MACPF) domain (IPR020864);NIAS_FLcDNA=001-200-E04;Expression=AK105639;TENOR=Os02t0475300-03;KEGG=Os02t0475300-03
Chr02	irgsp1_rep	five_prime_UTR	16261511	16261576	.	+	.	Parent=Os02t0475300-03
Chr02	irgsp1_rep	CDS	16261577	16261818	.	+	0	Parent=Os02t0475300-03
Chr02	irgsp1_rep	CDS	16262046	16262247	.	+	1	Parent=Os02t0475300-03
Chr02	irgsp1_rep	CDS	16262326	16262406	.	+	0	Parent=Os02t0475300-03
Chr02	irgsp1_rep	CDS	16262490	16262673	.	+	0	Parent=Os02t0475300-03
Chr02	irgsp1_rep	CDS	16262843	16263009	.	+	2	Parent=Os02t0475300-03
Chr02	irgsp1_rep	CDS	16263238	16264020	.	+	0	Parent=Os02t0475300-03
Chr02	irgsp1_rep	three_prime_UTR	16264021	16264323	.	+	.	Parent=Os02t0475300-03
Chr02	irgsp1_rep	mRNA	16265406	16268832	.	+	.	ID=Os02t0475400-01;Name=Os02t0475400-01;Locus_id=Os02g0475400;Note=Bile acid:sodium symporter family protein.;Transcript_evidence=AK121008 (DDBJ%2C Best hit);ORF_evidence=XP_002885704.1 (RefSeq);GO=Biological Process: sodium ion transport (GO:0006814),Cellular Component: membrane (GO:0016020),Molecular Function: bile acid:sodium symporter activity (GO:0008508);InterPro=Bile acid:sodium symporter (IPR002657);NIAS_FLcDNA=J023047A02;Expression=AK121008;TENOR=Os02t0475400-01;KEGG=Os02t0475400-01
Chr02	irgsp1_rep	five_prime_UTR	16265406	16265479	.	+	.	Parent=Os02t0475400-01
Chr02	irgsp1_rep	CDS	16265480	16265862	.	+	0	Parent=Os02t0475400-01
Chr02	irgsp1_rep	CDS	16265992	16266087	.	+	1	Parent=Os02t0475400-01
Chr02	irgsp1_rep	CDS	16266209	16266515	.	+	1	Parent=Os02t0475400-01
Chr02	irgsp1_rep	CDS	16266635	16266882	.	+	0	Parent=Os02t0475400-01
Chr02	irgsp1_rep	CDS	16267419	16267656	.	+	1	Parent=Os02t0475400-01
Chr02	irgsp1_rep	three_prime_UTR	16267657	16267925	.	+	.	Parent=Os02t0475400-01
Chr02	irgsp1_rep	three_prime_UTR	16268474	16268832	.	+	.	Parent=Os02t0475400-01
Chr02	irgsp1_rep	mRNA	16270018	16277534	.	-	.	ID=Os02t0475500-00;Name=Os02t0475500-00;Locus_id=Os02g0475500;Note=NB-ARC domain containing protein.;Transcript_evidence=AK362822 (DDBJ);ORF_evidence=A3A6T3 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os02t0475500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	16277427	16277534	.	-	.	Parent=Os02t0475500-00
Chr02	irgsp1_rep	five_prime_UTR	16272507	16272577	.	-	.	Parent=Os02t0475500-00
Chr02	irgsp1_rep	CDS	16272467	16272506	.	-	0	Parent=Os02t0475500-00
Chr02	irgsp1_rep	CDS	16270903	16271924	.	-	2	Parent=Os02t0475500-00
Chr02	irgsp1_rep	CDS	16270018	16270839	.	-	0	Parent=Os02t0475500-00
Chr02	irgsp1_rep	mRNA	16323185	16325968	.	+	.	ID=Os02t0476700-01;Name=Os02t0476700-01;Locus_id=Os02g0476700;Note=Hypothetical gene.;Transcript_evidence=AK289067 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090094B22;TENOR=Os02t0476700-01;KEGG=Os02t0476700-01
Chr02	irgsp1_rep	five_prime_UTR	16323185	16325034	.	+	.	Parent=Os02t0476700-01
Chr02	irgsp1_rep	CDS	16325035	16325319	.	+	0	Parent=Os02t0476700-01
Chr02	irgsp1_rep	three_prime_UTR	16325320	16325968	.	+	.	Parent=Os02t0476700-01
Chr02	irgsp1_rep	mRNA	16323463	16328507	.	-	.	ID=Os02t0476901-00;Name=Os02t0476901-00;Locus_id=Os02g0476901;Note=Hypothetical conserved gene.;Transcript_evidence=BT054988 (DDBJ);ORF_evidence=Q01J67 (UniProt);TENOR=Os02t0476901-00;KEGG=Os02t0476901-00
Chr02	irgsp1_rep	five_prime_UTR	16328401	16328507	.	-	.	Parent=Os02t0476901-00
Chr02	irgsp1_rep	five_prime_UTR	16328178	16328319	.	-	.	Parent=Os02t0476901-00
Chr02	irgsp1_rep	five_prime_UTR	16323873	16323899	.	-	.	Parent=Os02t0476901-00
Chr02	irgsp1_rep	CDS	16323663	16323872	.	-	0	Parent=Os02t0476901-00
Chr02	irgsp1_rep	three_prime_UTR	16323463	16323662	.	-	.	Parent=Os02t0476901-00
Chr02	irgsp1_rep	mRNA	16343270	16345584	.	-	.	ID=Os02t0477100-01;Name=Os02t0477100-01;Locus_id=Os02g0477100;Note=Hypothetical conserved gene.;Transcript_evidence=AK102085 (DDBJ%2C Best hit);ORF_evidence=NP_001175520.1 (RefSeq);NIAS_FLcDNA=J033082M13;Expression=AK102085;TENOR=Os02t0477100-01;KEGG=Os02t0477100-01
Chr02	irgsp1_rep	five_prime_UTR	16345546	16345584	.	-	.	Parent=Os02t0477100-01
Chr02	irgsp1_rep	CDS	16345159	16345545	.	-	0	Parent=Os02t0477100-01
Chr02	irgsp1_rep	three_prime_UTR	16344190	16345158	.	-	.	Parent=Os02t0477100-01
Chr02	irgsp1_rep	three_prime_UTR	16343270	16343581	.	-	.	Parent=Os02t0477100-01
Chr02	irgsp1_rep	mRNA	16347717	16350263	.	-	.	ID=Os02t0477300-01;Name=Os02t0477300-01;Locus_id=Os02g0477300;Note=Hypothetical conserved gene.;Transcript_evidence=AK102531 (DDBJ%2C Best hit);ORF_evidence=Q2QS80 (UniProt);NIAS_FLcDNA=J033096E13;Expression=AK102531;TENOR=Os02t0477300-01;KEGG=Os02t0477300-01
Chr02	irgsp1_rep	five_prime_UTR	16348483	16350263	.	-	.	Parent=Os02t0477300-01
Chr02	irgsp1_rep	CDS	16348459	16348482	.	-	0	Parent=Os02t0477300-01
Chr02	irgsp1_rep	CDS	16348335	16348373	.	-	0	Parent=Os02t0477300-01
Chr02	irgsp1_rep	CDS	16348091	16348195	.	-	0	Parent=Os02t0477300-01
Chr02	irgsp1_rep	CDS	16347983	16348003	.	-	0	Parent=Os02t0477300-01
Chr02	irgsp1_rep	three_prime_UTR	16347717	16347982	.	-	.	Parent=Os02t0477300-01
Chr02	irgsp1_rep	mRNA	16355893	16356705	.	-	.	ID=Os02t0477401-00;Name=Os02t0477401-00;Locus_id=Os02g0477401;Note=Conserved hypothetical protein.;Transcript_evidence=EU948874 (DDBJ);ORF_evidence=NP_001172961.1 (RefSeq);TENOR=Os02t0477401-00;KEGG=Os02t0477401-00
Chr02	irgsp1_rep	five_prime_UTR	16356656	16356705	.	-	.	Parent=Os02t0477401-00
Chr02	irgsp1_rep	CDS	16355903	16356655	.	-	0	Parent=Os02t0477401-00
Chr02	irgsp1_rep	three_prime_UTR	16355893	16355902	.	-	.	Parent=Os02t0477401-00
Chr02	irgsp1_rep	mRNA	16360196	16364326	.	-	.	ID=Os02t0477700-01;Name=Os02t0477700-01;Locus_id=Os02g0477700;CGSNL Gene Symbol=D12;CGSNL Gene Name=DWARF YUKARA DWARF OR FUKEI 71;Oryzabase Gene Symbol Synonym(s)=d12(d50)%2C dwf11%2C d50%2C d12%2C d32%2C F71%2C DMT9;Oryzabase Gene Name Synonym(s)=yukara dwarf or fukei 71 dwarf%2C dwarf-12%2C DWARF50;Note=Similar to Type II inositol-1%2C4%2C5-trisphosphate 5-phosphatase 12 (EC 3.1.3.36) (At5PTase12) (FRAGILE FIBER3 protein).;Transcript_evidence=AK067614 (DDBJ%2C Best hit);ORF_evidence=E5RT37 (UniProt);InterPro=Endonuclease/exonuclease/phosphatase (IPR005135);NIAS_FLcDNA=J013108P21;Manual Curation=August 6%2C 2020;Oryzabase=61;Expression=AK067614;TENOR=Os02t0477700-01;KEGG=Os02t0477700-01 (EC:3.1.3.36);B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	16364083	16364326	.	-	.	Parent=Os02t0477700-01
Chr02	irgsp1_rep	five_prime_UTR	16363418	16363539	.	-	.	Parent=Os02t0477700-01
Chr02	irgsp1_rep	five_prime_UTR	16362466	16363332	.	-	.	Parent=Os02t0477700-01
Chr02	irgsp1_rep	CDS	16362318	16362465	.	-	0	Parent=Os02t0477700-01
Chr02	irgsp1_rep	CDS	16362140	16362177	.	-	2	Parent=Os02t0477700-01
Chr02	irgsp1_rep	CDS	16361794	16362043	.	-	0	Parent=Os02t0477700-01
Chr02	irgsp1_rep	CDS	16361597	16361720	.	-	2	Parent=Os02t0477700-01
Chr02	irgsp1_rep	CDS	16361189	16361516	.	-	1	Parent=Os02t0477700-01
Chr02	irgsp1_rep	CDS	16360332	16360601	.	-	0	Parent=Os02t0477700-01
Chr02	irgsp1_rep	three_prime_UTR	16360196	16360331	.	-	.	Parent=Os02t0477700-01
Chr02	irgsp1_rep	mRNA	16360156	16367074	.	-	.	ID=Os02t0477700-02;Name=Os02t0477700-02;Locus_id=Os02g0477700;RAP-DB Gene Symbol Synonym(s)=D50;RAP-DB Gene Name Synonym(s)=DWARF50;CGSNL Gene Symbol=D12;CGSNL Gene Name=DWARF YUKARA DWARF OR FUKEI 71;Oryzabase Gene Symbol Synonym(s)=d12(d50)%2C dwf11%2C d50%2C d12%2C d32%2C F71%2C DMT9;Oryzabase Gene Name Synonym(s)=yukara dwarf or fukei 71 dwarf%2C dwarf-12%2C DWARF50;Note=Inositol polyphosphate 5-phosphatase%2C Development of internode cell-producing intercalary meristem;Transcript_evidence=AB571989 (Fujiminori);ORF_evidence=E5RT37;GO=Biological Process: phosphatidylinositol dephosphorylation (GO:0046856),Molecular Function: protein binding (GO:0005515);InterPro=WD40/YVTN repeat-like-containing domain superfamily (IPR015943),Endonuclease/exonuclease/phosphatase superfamily (IPR036691),Endonuclease/exonuclease/phosphatase (IPR005135),Inositol polyphosphate-related phosphatase (IPR000300),WD40 repeat (IPR001680);Manual Curation=August 6%2C 2020;Literature_PMID=22574770;Oryzabase=61
Chr02	irgsp1_rep	five_prime_UTR	16367015	16367074	.	-	.	Parent=Os02t0477700-02
Chr02	irgsp1_rep	CDS	16366216	16367014	.	-	0	Parent=Os02t0477700-02
Chr02	irgsp1_rep	CDS	16364993	16365245	.	-	2	Parent=Os02t0477700-02
Chr02	irgsp1_rep	CDS	16364083	16364890	.	-	1	Parent=Os02t0477700-02
Chr02	irgsp1_rep	CDS	16363418	16363539	.	-	0	Parent=Os02t0477700-02
Chr02	irgsp1_rep	CDS	16363248	16363332	.	-	1	Parent=Os02t0477700-02
Chr02	irgsp1_rep	CDS	16362318	16362483	.	-	0	Parent=Os02t0477700-02
Chr02	irgsp1_rep	CDS	16362140	16362177	.	-	2	Parent=Os02t0477700-02
Chr02	irgsp1_rep	CDS	16361794	16362043	.	-	0	Parent=Os02t0477700-02
Chr02	irgsp1_rep	CDS	16361597	16361720	.	-	2	Parent=Os02t0477700-02
Chr02	irgsp1_rep	CDS	16361189	16361516	.	-	1	Parent=Os02t0477700-02
Chr02	irgsp1_rep	CDS	16360332	16360601	.	-	0	Parent=Os02t0477700-02
Chr02	irgsp1_rep	three_prime_UTR	16360156	16360331	.	-	.	Parent=Os02t0477700-02
Chr02	irgsp1_rep	mRNA	16397680	16401544	.	-	.	ID=Os02t0478050-01;Name=Os02t0478050-01;Locus_id=Os02g0478050;Note=Similar to predicted protein.;Transcript_evidence=AK242813 (DDBJ%2C Best hit);ORF_evidence=NP_001172962.1 (RefSeq);NIAS_FLcDNA=J090061F20;TENOR=Os02t0478050-01;KEGG=Os02t0478050-01
Chr02	irgsp1_rep	five_prime_UTR	16401537	16401544	.	-	.	Parent=Os02t0478050-01
Chr02	irgsp1_rep	CDS	16401021	16401536	.	-	0	Parent=Os02t0478050-01
Chr02	irgsp1_rep	three_prime_UTR	16397680	16401020	.	-	.	Parent=Os02t0478050-01
Chr02	irgsp1_rep	mRNA	16414631	16415662	.	+	.	ID=Os02t0478300-00;Name=Os02t0478300-00;Locus_id=Os02g0478300;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6K5R9 (UniProt);TENOR=Os02t0478300-00
Chr02	irgsp1_rep	CDS	16414631	16415662	.	+	0	Parent=Os02t0478300-00
Chr02	irgsp1_rep	mRNA	16425253	16425567	.	-	.	ID=Os02t0478450-00;Name=Os02t0478450-00;Locus_id=Os02g0478450;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001172963.1 (RefSeq);TENOR=Os02t0478450-00
Chr02	irgsp1_rep	CDS	16425253	16425567	.	-	0	Parent=Os02t0478450-00
Chr02	irgsp1_rep	mRNA	16426109	16430574	.	+	.	ID=Os02t0478500-01;Name=Os02t0478500-01;Locus_id=Os02g0478500;Note=Conserved hypothetical protein.;Transcript_evidence=AK287796 (DDBJ%2C Best hit);ORF_evidence=Q6K5R7 (UniProt);NIAS_FLcDNA=J065174P20;TENOR=Os02t0478500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	16426109	16426110	.	+	.	Parent=Os02t0478500-01
Chr02	irgsp1_rep	CDS	16426111	16426593	.	+	0	Parent=Os02t0478500-01
Chr02	irgsp1_rep	CDS	16428296	16428456	.	+	0	Parent=Os02t0478500-01
Chr02	irgsp1_rep	CDS	16428822	16428852	.	+	1	Parent=Os02t0478500-01
Chr02	irgsp1_rep	CDS	16429514	16429616	.	+	0	Parent=Os02t0478500-01
Chr02	irgsp1_rep	CDS	16430002	16430315	.	+	2	Parent=Os02t0478500-01
Chr02	irgsp1_rep	three_prime_UTR	16430316	16430574	.	+	.	Parent=Os02t0478500-01
Chr02	irgsp1_rep	mRNA	16440267	16442384	.	+	.	ID=Os02t0478600-01;Name=Os02t0478600-01;Locus_id=Os02g0478600;CGSNL Gene Symbol=RPS15A;CGSNL Gene Name=RIBOSOMAL PROTEIN S15A;Oryzabase Gene Symbol Synonym(s)=RPS15a%2C OsRPS15a;Oryzabase Gene Name Synonym(s)=ribosomal protein S15a%2C ribosomal protein small subunit 15a;Note=Similar to 40S ribosomal protein S15A.;Transcript_evidence=AK119795 (DDBJ%2C Best hit),AK058347 (DDBJ%2C Best hit);ORF_evidence=A6N079 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S8 (IPR000630);NIAS_FLcDNA=002-175-C06,001-014-E03;Oryzabase=22178;TENOR=Os02t0478600-01
Chr02	irgsp1_rep	five_prime_UTR	16440267	16440359	.	+	.	Parent=Os02t0478600-01
Chr02	irgsp1_rep	five_prime_UTR	16441563	16441567	.	+	.	Parent=Os02t0478600-01
Chr02	irgsp1_rep	CDS	16441568	16441700	.	+	0	Parent=Os02t0478600-01
Chr02	irgsp1_rep	CDS	16441823	16441983	.	+	2	Parent=Os02t0478600-01
Chr02	irgsp1_rep	CDS	16442081	16442179	.	+	0	Parent=Os02t0478600-01
Chr02	irgsp1_rep	three_prime_UTR	16442180	16442384	.	+	.	Parent=Os02t0478600-01
Chr02	irgsp1_rep	mRNA	16441562	16442197	.	-	.	ID=Os02t0478650-00;Name=Os02t0478650-00;Locus_id=Os02g0478650;Note=Non-protein coding transcript.;Transcript_evidence=BT016937 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0478650-00
Chr02	irgsp1_rep	exon	16442054	16442197	.	-	.	Parent=Os02t0478650-00
Chr02	irgsp1_rep	exon	16441805	16441957	.	-	.	Parent=Os02t0478650-00
Chr02	irgsp1_rep	exon	16441562	16441678	.	-	.	Parent=Os02t0478650-00
Chr02	irgsp1_rep	mRNA	16445679	16447357	.	+	.	ID=Os02t0478700-01;Name=Os02t0478700-01;Locus_id=Os02g0478700;Note=Ribosomal protein S27.;Transcript_evidence=AK099723 (DDBJ%2C Best hit);ORF_evidence=A2X4T7 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S27e (IPR000592),Ribosomal protein%2C zinc-binding domain (IPR011332),Ribosomal protein S27e%2C zinc-binding domain (IPR023407);NIAS_FLcDNA=J013089A06;Expression=AK099723;TENOR=Os02t0478700-01;KEGG=Os02t0478700-01
Chr02	irgsp1_rep	five_prime_UTR	16445679	16445788	.	+	.	Parent=Os02t0478700-01
Chr02	irgsp1_rep	CDS	16445789	16445791	.	+	0	Parent=Os02t0478700-01
Chr02	irgsp1_rep	CDS	16445935	16446036	.	+	0	Parent=Os02t0478700-01
Chr02	irgsp1_rep	CDS	16446198	16446226	.	+	0	Parent=Os02t0478700-01
Chr02	irgsp1_rep	CDS	16446937	16447063	.	+	1	Parent=Os02t0478700-01
Chr02	irgsp1_rep	three_prime_UTR	16447064	16447357	.	+	.	Parent=Os02t0478700-01
Chr02	irgsp1_rep	mRNA	16450471	16453254	.	+	.	ID=Os02t0478900-00;Name=Os02t0478900-00;Locus_id=Os02g0478900;Note=Similar to Splicing factor 3B subunit 1.;Transcript_evidence=ab initio prediction;ORF_evidence=D0N488 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Splicing factor 3B subunit 1 (IPR015016),Armadillo-type fold (IPR016024),HEAT%2C type 2 (IPR021133);TENOR=Os02t0478900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	16450471	16453254	.	+	0	Parent=Os02t0478900-00
Chr02	irgsp1_rep	mRNA	16455174	16455736	.	+	.	ID=Os02t0479100-00;Name=Os02t0479100-00;Locus_id=Os02g0479100;Note=Hypothetical protein.;Transcript_evidence=EU948252 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0479100-00
Chr02	irgsp1_rep	five_prime_UTR	16455174	16455175	.	+	.	Parent=Os02t0479100-00
Chr02	irgsp1_rep	CDS	16455176	16455736	.	+	0	Parent=Os02t0479100-00
Chr02	irgsp1_rep	mRNA	16465980	16468490	.	-	.	ID=Os02t0479300-01;Name=Os02t0479300-01;Locus_id=Os02g0479300;Note=Similar to RS21-C6 protein.;Transcript_evidence=AK241251 (DDBJ%2C Best hit);ORF_evidence=NP_001148449.1 (RefSeq);InterPro=NTP pyrophosphohydrolase MazG%2C putative catalytic core (IPR004518);NIAS_FLcDNA=J065130B10;TENOR=Os02t0479300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	16466556	16468490	.	-	.	Parent=Os02t0479300-01
Chr02	irgsp1_rep	CDS	16466103	16466555	.	-	0	Parent=Os02t0479300-01
Chr02	irgsp1_rep	three_prime_UTR	16465980	16466102	.	-	.	Parent=Os02t0479300-01
Chr02	irgsp1_rep	mRNA	16476985	16482171	.	-	.	ID=Os02t0479700-00;Name=Os02t0479700-00;Locus_id=Os02g0479700;Note=Similar to Ulp1 protease family%2C C-terminal catalytic domain containing protein.;Transcript_evidence=CT835766 (DDBJ%2C Secondary hit);ORF_evidence=Q109R5 (UniProt);TENOR=Os02t0479700-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	16482077	16482171	.	-	.	Parent=Os02t0479700-00
Chr02	irgsp1_rep	five_prime_UTR	16481518	16481837	.	-	.	Parent=Os02t0479700-00
Chr02	irgsp1_rep	CDS	16481290	16481517	.	-	0	Parent=Os02t0479700-00
Chr02	irgsp1_rep	CDS	16479970	16480141	.	-	0	Parent=Os02t0479700-00
Chr02	irgsp1_rep	CDS	16479572	16479702	.	-	2	Parent=Os02t0479700-00
Chr02	irgsp1_rep	three_prime_UTR	16479556	16479571	.	-	.	Parent=Os02t0479700-00
Chr02	irgsp1_rep	three_prime_UTR	16479293	16479466	.	-	.	Parent=Os02t0479700-00
Chr02	irgsp1_rep	three_prime_UTR	16479071	16479196	.	-	.	Parent=Os02t0479700-00
Chr02	irgsp1_rep	three_prime_UTR	16478850	16478980	.	-	.	Parent=Os02t0479700-00
Chr02	irgsp1_rep	three_prime_UTR	16478660	16478735	.	-	.	Parent=Os02t0479700-00
Chr02	irgsp1_rep	three_prime_UTR	16478287	16478580	.	-	.	Parent=Os02t0479700-00
Chr02	irgsp1_rep	three_prime_UTR	16478016	16478214	.	-	.	Parent=Os02t0479700-00
Chr02	irgsp1_rep	three_prime_UTR	16477781	16477890	.	-	.	Parent=Os02t0479700-00
Chr02	irgsp1_rep	three_prime_UTR	16477456	16477710	.	-	.	Parent=Os02t0479700-00
Chr02	irgsp1_rep	three_prime_UTR	16477297	16477372	.	-	.	Parent=Os02t0479700-00
Chr02	irgsp1_rep	three_prime_UTR	16477052	16477214	.	-	.	Parent=Os02t0479700-00
Chr02	irgsp1_rep	three_prime_UTR	16476985	16477045	.	-	.	Parent=Os02t0479700-00
Chr02	irgsp1_rep	mRNA	16497236	16502221	.	-	.	ID=Os02t0480200-01;Name=Os02t0480200-01;Locus_id=Os02g0480200;Note=Hypothetical conserved gene.;Transcript_evidence=AK288045 (DDBJ%2C Best hit);ORF_evidence=B9EYB6 (UniProt);NIAS_FLcDNA=J075146A07;TENOR=Os02t0480200-01;KEGG=Os02t0480200-01
Chr02	irgsp1_rep	five_prime_UTR	16501672	16502221	.	-	.	Parent=Os02t0480200-01
Chr02	irgsp1_rep	five_prime_UTR	16501087	16501132	.	-	.	Parent=Os02t0480200-01
Chr02	irgsp1_rep	five_prime_UTR	16500076	16500077	.	-	.	Parent=Os02t0480200-01
Chr02	irgsp1_rep	CDS	16500030	16500075	.	-	0	Parent=Os02t0480200-01
Chr02	irgsp1_rep	CDS	16499636	16499737	.	-	2	Parent=Os02t0480200-01
Chr02	irgsp1_rep	CDS	16499275	16499493	.	-	2	Parent=Os02t0480200-01
Chr02	irgsp1_rep	CDS	16499098	16499187	.	-	2	Parent=Os02t0480200-01
Chr02	irgsp1_rep	CDS	16498856	16499014	.	-	2	Parent=Os02t0480200-01
Chr02	irgsp1_rep	CDS	16498632	16498760	.	-	2	Parent=Os02t0480200-01
Chr02	irgsp1_rep	CDS	16498322	16498446	.	-	2	Parent=Os02t0480200-01
Chr02	irgsp1_rep	three_prime_UTR	16497958	16498321	.	-	.	Parent=Os02t0480200-01
Chr02	irgsp1_rep	three_prime_UTR	16497822	16497884	.	-	.	Parent=Os02t0480200-01
Chr02	irgsp1_rep	three_prime_UTR	16497236	16497736	.	-	.	Parent=Os02t0480200-01
Chr02	irgsp1_rep	mRNA	16503646	16507591	.	+	.	ID=Os02t0480466-00;Name=Os02t0480466-00;Locus_id=Os02g0480466;Note=Similar to Calcineurin B-like protein 02.;Transcript_evidence=BT088178 (DDBJ);ORF_evidence=A5BYS8 (UniProt);TENOR=Os02t0480466-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	16503646	16503807	.	+	0	Parent=Os02t0480466-00
Chr02	irgsp1_rep	CDS	16504777	16504848	.	+	0	Parent=Os02t0480466-00
Chr02	irgsp1_rep	three_prime_UTR	16504849	16504935	.	+	.	Parent=Os02t0480466-00
Chr02	irgsp1_rep	three_prime_UTR	16506972	16507004	.	+	.	Parent=Os02t0480466-00
Chr02	irgsp1_rep	three_prime_UTR	16507328	16507591	.	+	.	Parent=Os02t0480466-00
Chr02	irgsp1_rep	mRNA	16522375	16534304	.	+	.	ID=Os02t0480800-00;Name=Os02t0480800-00;Locus_id=Os02g0480800;Note=Similar to ATCBL3 (ARABIDOPSIS THALIANA CALCINEURIN B-LIKE 3)%3B calcium ion binding.;Transcript_evidence=FP097397 (DDBJ);ORF_evidence=NP_194387.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);TENOR=Os02t0480800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	16522375	16522467	.	+	.	Parent=Os02t0480800-00
Chr02	irgsp1_rep	five_prime_UTR	16532963	16533012	.	+	.	Parent=Os02t0480800-00
Chr02	irgsp1_rep	CDS	16533013	16533121	.	+	0	Parent=Os02t0480800-00
Chr02	irgsp1_rep	CDS	16533503	16533555	.	+	2	Parent=Os02t0480800-00
Chr02	irgsp1_rep	CDS	16533721	16533798	.	+	0	Parent=Os02t0480800-00
Chr02	irgsp1_rep	CDS	16533945	16534060	.	+	0	Parent=Os02t0480800-00
Chr02	irgsp1_rep	CDS	16534239	16534293	.	+	1	Parent=Os02t0480800-00
Chr02	irgsp1_rep	three_prime_UTR	16534294	16534304	.	+	.	Parent=Os02t0480800-00
Chr02	irgsp1_rep	mRNA	16537356	16545691	.	-	.	ID=Os02t0480900-01;Name=Os02t0480900-01;Locus_id=Os02g0480900;Note=LsmAD domain domain containing protein.;Transcript_evidence=AK073830 (DDBJ%2C Best hit);ORF_evidence=B9F005 (UniProt);InterPro=LsmAD domain (IPR009604);NIAS_FLcDNA=J033068A12;Expression=AK073830;TENOR=Os02t0480900-01;KEGG=Os02t0480900-01
Chr02	irgsp1_rep	five_prime_UTR	16545401	16545691	.	-	.	Parent=Os02t0480900-01
Chr02	irgsp1_rep	five_prime_UTR	16544209	16544213	.	-	.	Parent=Os02t0480900-01
Chr02	irgsp1_rep	CDS	16544067	16544208	.	-	0	Parent=Os02t0480900-01
Chr02	irgsp1_rep	CDS	16543838	16543990	.	-	2	Parent=Os02t0480900-01
Chr02	irgsp1_rep	CDS	16543565	16543695	.	-	2	Parent=Os02t0480900-01
Chr02	irgsp1_rep	CDS	16543176	16543360	.	-	0	Parent=Os02t0480900-01
Chr02	irgsp1_rep	CDS	16542324	16542501	.	-	1	Parent=Os02t0480900-01
Chr02	irgsp1_rep	CDS	16541872	16542054	.	-	0	Parent=Os02t0480900-01
Chr02	irgsp1_rep	CDS	16541388	16541500	.	-	0	Parent=Os02t0480900-01
Chr02	irgsp1_rep	CDS	16540254	16540323	.	-	1	Parent=Os02t0480900-01
Chr02	irgsp1_rep	CDS	16540134	16540167	.	-	0	Parent=Os02t0480900-01
Chr02	irgsp1_rep	CDS	16539234	16539511	.	-	2	Parent=Os02t0480900-01
Chr02	irgsp1_rep	CDS	16538993	16539124	.	-	0	Parent=Os02t0480900-01
Chr02	irgsp1_rep	CDS	16538225	16538314	.	-	0	Parent=Os02t0480900-01
Chr02	irgsp1_rep	CDS	16537808	16537861	.	-	0	Parent=Os02t0480900-01
Chr02	irgsp1_rep	CDS	16537686	16537718	.	-	0	Parent=Os02t0480900-01
Chr02	irgsp1_rep	three_prime_UTR	16537356	16537685	.	-	.	Parent=Os02t0480900-01
Chr02	irgsp1_rep	mRNA	16541138	16542199	.	-	.	ID=Os02t0480900-02;Name=Os02t0480900-02;Locus_id=Os02g0480900;Note=Hypothetical conserved gene.;Transcript_evidence=AK063200 (DDBJ%2C Best hit);ORF_evidence=B9F005 (UniProt);NIAS_FLcDNA=001-112-C07;Expression=AK063200;TENOR=Os02t0480900-02;KEGG=Os02t0480900-02
Chr02	irgsp1_rep	five_prime_UTR	16542109	16542199	.	-	.	Parent=Os02t0480900-02
Chr02	irgsp1_rep	CDS	16541827	16542108	.	-	0	Parent=Os02t0480900-02
Chr02	irgsp1_rep	three_prime_UTR	16541138	16541826	.	-	.	Parent=Os02t0480900-02
Chr02	irgsp1_rep	mRNA	16537316	16541946	.	-	.	ID=Os02t0480900-03;Name=Os02t0480900-03;Locus_id=Os02g0480900;Note=Hypothetical conserved gene.;Transcript_evidence=AK121829 (DDBJ%2C Best hit);ORF_evidence=B9F005 (UniProt);NIAS_FLcDNA=J033099H15;Expression=AK121829;TENOR=Os02t0480900-03;KEGG=Os02t0480900-03
Chr02	irgsp1_rep	CDS	16541872	16541946	.	-	0	Parent=Os02t0480900-03
Chr02	irgsp1_rep	CDS	16541388	16541500	.	-	0	Parent=Os02t0480900-03
Chr02	irgsp1_rep	CDS	16540254	16540323	.	-	1	Parent=Os02t0480900-03
Chr02	irgsp1_rep	CDS	16540134	16540167	.	-	0	Parent=Os02t0480900-03
Chr02	irgsp1_rep	CDS	16539234	16539511	.	-	2	Parent=Os02t0480900-03
Chr02	irgsp1_rep	CDS	16538993	16539124	.	-	0	Parent=Os02t0480900-03
Chr02	irgsp1_rep	CDS	16538225	16538314	.	-	0	Parent=Os02t0480900-03
Chr02	irgsp1_rep	CDS	16537808	16537861	.	-	0	Parent=Os02t0480900-03
Chr02	irgsp1_rep	CDS	16537686	16537718	.	-	0	Parent=Os02t0480900-03
Chr02	irgsp1_rep	three_prime_UTR	16537316	16537685	.	-	.	Parent=Os02t0480900-03
Chr02	irgsp1_rep	mRNA	16545412	16547806	.	+	.	ID=Os02t0480950-00;Name=Os02t0480950-00;Locus_id=Os02g0480950;Note=Hypothetical protein.;Transcript_evidence=U08226 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0480950-00
Chr02	irgsp1_rep	five_prime_UTR	16545412	16545412	.	+	.	Parent=Os02t0480950-00
Chr02	irgsp1_rep	CDS	16545413	16545603	.	+	0	Parent=Os02t0480950-00
Chr02	irgsp1_rep	CDS	16547676	16547703	.	+	1	Parent=Os02t0480950-00
Chr02	irgsp1_rep	three_prime_UTR	16547704	16547806	.	+	.	Parent=Os02t0480950-00
Chr02	irgsp1_rep	mRNA	16550282	16552919	.	-	.	ID=Os02t0481000-01;Name=Os02t0481000-01;Locus_id=Os02g0481000;Note=Translation protein SH3-like domain containing protein.;Transcript_evidence=AK066511 (DDBJ%2C Best hit);ORF_evidence=B6TRL7 (UniProt);NIAS_FLcDNA=J013070L01;Expression=AK066511;TENOR=Os02t0481000-01;KEGG=Os02t0481000-01
Chr02	irgsp1_rep	five_prime_UTR	16552800	16552919	.	-	.	Parent=Os02t0481000-01
Chr02	irgsp1_rep	CDS	16552515	16552799	.	-	0	Parent=Os02t0481000-01
Chr02	irgsp1_rep	CDS	16552394	16552436	.	-	0	Parent=Os02t0481000-01
Chr02	irgsp1_rep	CDS	16550645	16550769	.	-	2	Parent=Os02t0481000-01
Chr02	irgsp1_rep	three_prime_UTR	16550282	16550644	.	-	.	Parent=Os02t0481000-01
Chr02	irgsp1_rep	mRNA	16602669	16608160	.	-	.	ID=Os02t0481700-01;Name=Os02t0481700-01;Locus_id=Os02g0481700;Note=Similar to lipase class 3 family protein.;Transcript_evidence=AK120085 (DDBJ%2C Best hit);ORF_evidence=XP_002882526.1 (RefSeq);NIAS_FLcDNA=J013020G10;Expression=AK120085;TENOR=Os02t0481700-01;KEGG=Os02t0481700-01
Chr02	irgsp1_rep	five_prime_UTR	16608160	16608160	.	-	.	Parent=Os02t0481700-01
Chr02	irgsp1_rep	CDS	16608113	16608159	.	-	0	Parent=Os02t0481700-01
Chr02	irgsp1_rep	CDS	16607223	16607504	.	-	1	Parent=Os02t0481700-01
Chr02	irgsp1_rep	CDS	16605528	16605843	.	-	1	Parent=Os02t0481700-01
Chr02	irgsp1_rep	CDS	16605302	16605451	.	-	0	Parent=Os02t0481700-01
Chr02	irgsp1_rep	CDS	16604174	16604710	.	-	0	Parent=Os02t0481700-01
Chr02	irgsp1_rep	CDS	16602986	16603174	.	-	0	Parent=Os02t0481700-01
Chr02	irgsp1_rep	three_prime_UTR	16602669	16602985	.	-	.	Parent=Os02t0481700-01
Chr02	irgsp1_rep	mRNA	16617411	16618556	.	+	.	ID=Os02t0481900-01;Name=Os02t0481900-01;Locus_id=Os02g0481900;Oryzabase Gene Symbol Synonym(s)=OsXrn4-L%2C Xrn4-L;Oryzabase Gene Name Synonym(s)=OsXrn4-like%2C Xrn4-like%2C 5'-3' exoribonuclease 4-like;Note=Hypothetical conserved gene.;Transcript_evidence=AK070782 (DDBJ%2C Best hit);ORF_evidence=B9F008 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: exonuclease activity (GO:0004527);InterPro=Putative 5-3 exonuclease (IPR004859);NIAS_FLcDNA=J023063C24;Oryzabase=22103;Expression=AK070782;TENOR=Os02t0481900-01;KEGG=Os02t0481900-01 (EC:3.1.13.-)
Chr02	irgsp1_rep	five_prime_UTR	16617411	16617537	.	+	.	Parent=Os02t0481900-01
Chr02	irgsp1_rep	CDS	16617538	16617714	.	+	0	Parent=Os02t0481900-01
Chr02	irgsp1_rep	CDS	16617804	16617920	.	+	0	Parent=Os02t0481900-01
Chr02	irgsp1_rep	three_prime_UTR	16617921	16618556	.	+	.	Parent=Os02t0481900-01
Chr02	irgsp1_rep	mRNA	16617437	16633889	.	+	.	ID=Os02t0481900-02;Name=Os02t0481900-02;Locus_id=Os02g0481900;RAP-DB Gene Symbol Synonym(s)=OsXrn4-L;RAP-DB Gene Name Synonym(s)=OsXrn4-like;Oryzabase Gene Symbol Synonym(s)=OsXrn4-L%2C Xrn4-L;Oryzabase Gene Name Synonym(s)=OsXrn4-like%2C Xrn4-like%2C 5'-3' exoribonuclease 4-like;Note=5'-3' exoribonuclease;Transcript_evidence=AK066344;ORF_evidence=Q6K2K4;GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: exonuclease activity (GO:0004527),Molecular Function: 5'-3' exoribonuclease activity (GO:0004534),Cellular Component: nucleus (GO:0005634);InterPro=5'-3' exoribonuclease type 2 (IPR017151),Putative 5-3 exonuclease (IPR004859),Xrn1%2C helical domain (IPR041412);NIAS_FLcDNA=J013060H09;Manual Curation=July 15%2C 2020;Literature_PMID=28987346;Oryzabase=22103;Expression=AK066344;TENOR=Os02t0481900-02
Chr02	irgsp1_rep	five_prime_UTR	16617437	16617537	.	+	.	Parent=Os02t0481900-02
Chr02	irgsp1_rep	CDS	16617538	16617714	.	+	0	Parent=Os02t0481900-02
Chr02	irgsp1_rep	CDS	16617804	16617909	.	+	0	Parent=Os02t0481900-02
Chr02	irgsp1_rep	CDS	16618123	16618181	.	+	2	Parent=Os02t0481900-02
Chr02	irgsp1_rep	CDS	16618300	16618458	.	+	0	Parent=Os02t0481900-02
Chr02	irgsp1_rep	CDS	16619371	16619490	.	+	0	Parent=Os02t0481900-02
Chr02	irgsp1_rep	CDS	16619628	16619690	.	+	0	Parent=Os02t0481900-02
Chr02	irgsp1_rep	CDS	16620134	16620178	.	+	0	Parent=Os02t0481900-02
Chr02	irgsp1_rep	CDS	16620259	16620423	.	+	0	Parent=Os02t0481900-02
Chr02	irgsp1_rep	CDS	16621358	16621435	.	+	0	Parent=Os02t0481900-02
Chr02	irgsp1_rep	CDS	16621536	16621646	.	+	0	Parent=Os02t0481900-02
Chr02	irgsp1_rep	CDS	16621734	16621850	.	+	0	Parent=Os02t0481900-02
Chr02	irgsp1_rep	CDS	16621931	16622026	.	+	0	Parent=Os02t0481900-02
Chr02	irgsp1_rep	CDS	16622810	16622880	.	+	0	Parent=Os02t0481900-02
Chr02	irgsp1_rep	CDS	16622998	16623124	.	+	1	Parent=Os02t0481900-02
Chr02	irgsp1_rep	CDS	16630700	16630804	.	+	0	Parent=Os02t0481900-02
Chr02	irgsp1_rep	CDS	16632261	16632317	.	+	0	Parent=Os02t0481900-02
Chr02	irgsp1_rep	CDS	16632416	16632564	.	+	0	Parent=Os02t0481900-02
Chr02	irgsp1_rep	CDS	16632668	16632763	.	+	1	Parent=Os02t0481900-02
Chr02	irgsp1_rep	CDS	16632838	16632913	.	+	1	Parent=Os02t0481900-02
Chr02	irgsp1_rep	CDS	16633028	16633101	.	+	0	Parent=Os02t0481900-02
Chr02	irgsp1_rep	CDS	16633209	16633626	.	+	1	Parent=Os02t0481900-02
Chr02	irgsp1_rep	three_prime_UTR	16633627	16633889	.	+	.	Parent=Os02t0481900-02
Chr02	irgsp1_rep	mRNA	16635166	16635946	.	+	.	ID=Os02t0482200-00;Name=Os02t0482200-00;Locus_id=Os02g0482200;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os02t0482200-00
Chr02	irgsp1_rep	CDS	16635166	16635168	.	+	0	Parent=Os02t0482200-00
Chr02	irgsp1_rep	CDS	16635287	16635946	.	+	0	Parent=Os02t0482200-00
Chr02	irgsp1_rep	mRNA	16639696	16641280	.	-	.	ID=Os02t0482400-01;Name=Os02t0482400-01;Locus_id=Os02g0482400;CGSNL Gene Symbol=ODCB;CGSNL Gene Name=ORNITHINE DECARBOXYLASE B;Oryzabase Gene Symbol Synonym(s)=ODCb%2C OsODC3%2C ODC3%2C OsODC1%2C ODC1;Oryzabase Gene Name Synonym(s)=Ornithine decarboxylase b%2C ornithine decarboxylase 3;Note=Similar to Ornithine decarboxylase (EC 4.1.1.17) (ODC).;Transcript_evidence=AK107159 (DDBJ%2C Best hit);ORF_evidence=C5X8J5 (UniProt);GO=Biological Process: polyamine biosynthetic process (GO:0006596),Molecular Function: catalytic activity (GO:0003824);InterPro=Ornithine/DAP/Arg decarboxylase (IPR000183),Ornithine decarboxylase (IPR002433),Orn/DAP/Arg decarboxylase 2%2C N-terminal (IPR022644),Orn/DAP/Arg decarboxylase 2%2C pyridoxal-phosphate binding site (IPR022653);NIAS_FLcDNA=002-124-E11;Oryzabase=11221;Expression=AK107159;TENOR=Os02t0482400-01;KEGG=Os02t0482400-01 (EC:4.1.1.17)
Chr02	irgsp1_rep	five_prime_UTR	16641197	16641280	.	-	.	Parent=Os02t0482400-01
Chr02	irgsp1_rep	CDS	16639823	16641196	.	-	0	Parent=Os02t0482400-01
Chr02	irgsp1_rep	three_prime_UTR	16639696	16639822	.	-	.	Parent=Os02t0482400-01
Chr02	irgsp1_rep	mRNA	16660905	16661495	.	+	.	ID=Os02t0483000-00;Name=Os02t0483000-00;Locus_id=Os02g0483000;Note=Similar to fasciclin-like arabinogalactan protein 8.;Transcript_evidence=EU963411 (DDBJ);ORF_evidence=NP_001149463.1 (RefSeq);TENOR=Os02t0483000-00;KEGG=Os02t0483000-00
Chr02	irgsp1_rep	five_prime_UTR	16660905	16661075	.	+	.	Parent=Os02t0483000-00
Chr02	irgsp1_rep	CDS	16661076	16661495	.	+	0	Parent=Os02t0483000-00
Chr02	irgsp1_rep	mRNA	16678288	16680030	.	-	.	ID=Os02t0483500-01;Name=Os02t0483500-01;Locus_id=Os02g0483500;Oryzabase Gene Symbol Synonym(s)=OsMaT-2;Oryzabase Gene Name Synonym(s)=malonyltransferase 2%2C flavonol 3-O-glucoside malonyltransferase;Note=Transferase family protein.;Transcript_evidence=AK103708 (DDBJ%2C Best hit);ORF_evidence=B8AHX5 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J033136O19;Oryzabase=15061;Expression=AK103708;TENOR=Os02t0483500-01;KEGG=Os02t0483500-01
Chr02	irgsp1_rep	five_prime_UTR	16679986	16680030	.	-	.	Parent=Os02t0483500-01
Chr02	irgsp1_rep	CDS	16678519	16679985	.	-	0	Parent=Os02t0483500-01
Chr02	irgsp1_rep	three_prime_UTR	16678288	16678518	.	-	.	Parent=Os02t0483500-01
Chr02	irgsp1_rep	mRNA	16692007	16693524	.	-	.	ID=Os02t0483800-00;Name=Os02t0483800-00;Locus_id=Os02g0483800;Note=Transferase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001046856.2 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os02t0483800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	16692007	16693524	.	-	0	Parent=Os02t0483800-00
Chr02	irgsp1_rep	mRNA	16702161	16703949	.	+	.	ID=Os02t0484200-01;Name=Os02t0484200-01;Locus_id=Os02g0484200;Oryzabase Gene Symbol Synonym(s)=OsMaT-1;Oryzabase Gene Name Synonym(s)=malonyltransferase 1;Note=Transferase family protein.;Transcript_evidence=AK103832 (DDBJ%2C Best hit);ORF_evidence=NP_001046855.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J033148A21;Oryzabase=15062;Expression=AK103832;TENOR=Os02t0484200-01;KEGG=Os02t0484200-01
Chr02	irgsp1_rep	five_prime_UTR	16702161	16702222	.	+	.	Parent=Os02t0484200-01
Chr02	irgsp1_rep	CDS	16702223	16703527	.	+	0	Parent=Os02t0484200-01
Chr02	irgsp1_rep	three_prime_UTR	16703528	16703949	.	+	.	Parent=Os02t0484200-01
Chr02	irgsp1_rep	mRNA	16718580	16719215	.	+	.	ID=Os02t0484390-00;Name=Os02t0484390-00;Locus_id=Os02g0484390;Note=Similar to SRR1-like protein.;Transcript_evidence=AK370161 (DDBJ);ORF_evidence=NP_001152112.1 (RefSeq);InterPro=Sensitivity To Red Light Reduced-like%2C SRR1 (IPR012942);TENOR=Os02t0484390-00
Chr02	irgsp1_rep	five_prime_UTR	16718580	16718763	.	+	.	Parent=Os02t0484390-00
Chr02	irgsp1_rep	CDS	16718764	16719120	.	+	0	Parent=Os02t0484390-00
Chr02	irgsp1_rep	three_prime_UTR	16719121	16719215	.	+	.	Parent=Os02t0484390-00
Chr02	irgsp1_rep	mRNA	16747801	16748325	.	-	.	ID=Os02t0484900-01;Name=Os02t0484900-01;Locus_id=Os02g0484900;Note=Non-protein coding transcript.;Transcript_evidence=AK240930 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065040K09;TENOR=Os02t0484900-01
Chr02	irgsp1_rep	exon	16747801	16748325	.	-	.	Parent=Os02t0484900-01
Chr02	irgsp1_rep	mRNA	16747962	16748375	.	+	.	ID=Os02t0484950-00;Name=Os02t0484950-00;Locus_id=Os02g0484950;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6K6T3 (UniProt);TENOR=Os02t0484950-00;KEGG=Os02t0484950-00
Chr02	irgsp1_rep	CDS	16747962	16748375	.	+	0	Parent=Os02t0484950-00
Chr02	irgsp1_rep	mRNA	16750078	16751562	.	-	.	ID=Os02t0484975-00;Name=Os02t0484975-00;Locus_id=Os02g0484975;Note=Conserved hypothetical protein.;Transcript_evidence=BT037204 (DDBJ);ORF_evidence=A3AX69 (UniProt);TENOR=Os02t0484975-00
Chr02	irgsp1_rep	CDS	16750078	16751562	.	-	0	Parent=Os02t0484975-00
Chr02	irgsp1_rep	mRNA	16750745	16751765	.	+	.	ID=Os02t0485000-01;Name=Os02t0485000-01;Locus_id=Os02g0485000;Oryzabase Gene Symbol Synonym(s)=OsMaT-3;Oryzabase Gene Name Synonym(s)=malonyltransferase 3;Note=Transferase domain containing protein.;Transcript_evidence=AK064246 (DDBJ%2C Best hit);ORF_evidence=Q6K6T2 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=002-105-B11;Oryzabase=15060;TENOR=Os02t0485000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	16750745	16750746	.	+	.	Parent=Os02t0485000-01
Chr02	irgsp1_rep	CDS	16750747	16751526	.	+	0	Parent=Os02t0485000-01
Chr02	irgsp1_rep	three_prime_UTR	16751527	16751765	.	+	.	Parent=Os02t0485000-01
Chr02	irgsp1_rep	mRNA	16806547	16807323	.	+	.	ID=Os02t0485800-00;Name=Os02t0485800-00;Locus_id=Os02g0485800;Note=Transferase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001046860.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os02t0485800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	16806547	16807323	.	+	0	Parent=Os02t0485800-00
Chr02	irgsp1_rep	mRNA	16830402	16834864	.	+	.	ID=Os02t0486400-01;Name=Os02t0486400-01;Locus_id=Os02g0486400;Note=Hypothetical protein.;Transcript_evidence=AK109580 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-137-A04;Expression=AK109580;TENOR=Os02t0486400-01;KEGG=Os02t0486400-01
Chr02	irgsp1_rep	five_prime_UTR	16830402	16831232	.	+	.	Parent=Os02t0486400-01
Chr02	irgsp1_rep	CDS	16831233	16831432	.	+	0	Parent=Os02t0486400-01
Chr02	irgsp1_rep	CDS	16834393	16834624	.	+	1	Parent=Os02t0486400-01
Chr02	irgsp1_rep	three_prime_UTR	16834625	16834864	.	+	.	Parent=Os02t0486400-01
Chr02	irgsp1_rep	mRNA	16835066	16836043	.	+	.	ID=Os02t0486500-00;Name=Os02t0486500-00;Locus_id=Os02g0486500;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B6SZH6 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os02t0486500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	16835066	16836043	.	+	0	Parent=Os02t0486500-00
Chr02	irgsp1_rep	mRNA	16915529	16919294	.	+	.	ID=Os02t0487300-01;Name=Os02t0487300-01;Locus_id=Os02g0487300;Oryzabase Gene Symbol Synonym(s)=OsEnS-37;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 37;Note=WRC domain containing protein.;Transcript_evidence=AK107615 (DDBJ%2C Best hit);ORF_evidence=A2X4X8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WRC (IPR014977);NIAS_FLcDNA=002-131-C10;Oryzabase=18368;Expression=AK107615;TENOR=Os02t0487300-01;KEGG=Os02t0487300-01
Chr02	irgsp1_rep	five_prime_UTR	16915529	16915600	.	+	.	Parent=Os02t0487300-01
Chr02	irgsp1_rep	CDS	16915601	16915837	.	+	0	Parent=Os02t0487300-01
Chr02	irgsp1_rep	CDS	16918150	16919097	.	+	0	Parent=Os02t0487300-01
Chr02	irgsp1_rep	three_prime_UTR	16919098	16919294	.	+	.	Parent=Os02t0487300-01
Chr02	irgsp1_rep	mRNA	16981502	16985338	.	-	.	ID=Os02t0488600-01;Name=Os02t0488600-01;Locus_id=Os02g0488600;Oryzabase Gene Symbol Synonym(s)=OsPUB8;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 8%2C U-box protein 8;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK242710 (DDBJ%2C Best hit);ORF_evidence=B6TTC2 (UniProt);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),U box domain (IPR003613),Armadillo-like helical (IPR011989),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J090041C04;Oryzabase=17801;TENOR=Os02t0488600-01;KEGG=Os02t0488600-01
Chr02	irgsp1_rep	CDS	16985153	16985338	.	-	0	Parent=Os02t0488600-01
Chr02	irgsp1_rep	CDS	16981769	16982854	.	-	0	Parent=Os02t0488600-01
Chr02	irgsp1_rep	three_prime_UTR	16981502	16981768	.	-	.	Parent=Os02t0488600-01
Chr02	irgsp1_rep	mRNA	17035598	17038087	.	+	.	ID=Os02t0489400-01;Name=Os02t0489400-01;Locus_id=Os02g0489400;CGSNL Gene Symbol=RPS8;CGSNL Gene Name=RIBOSOMAL PROTEIN S8;Oryzabase Gene Symbol Synonym(s)=S8;Oryzabase Gene Name Synonym(s)=ribosomal protein S8;Note=Similar to 40S ribosomal protein S8.;Transcript_evidence=AK102757 (DDBJ%2C Best hit),AK102402 (DDBJ%2C Best hit);ORF_evidence=B8AHZ6 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S8e (IPR001047),Ribosomal protein S8e%2C conserved site (IPR018283),Ribosomal protein S8e/ribosomal biogenesis NSA2 (IPR022309);NIAS_FLcDNA=J033107B18,J033092J19;Oryzabase=13755;Expression=AK102757;TENOR=Os02t0489400-01;KEGG=Os02t0489400-01
Chr02	irgsp1_rep	five_prime_UTR	17035598	17035681	.	+	.	Parent=Os02t0489400-01
Chr02	irgsp1_rep	CDS	17035682	17035685	.	+	0	Parent=Os02t0489400-01
Chr02	irgsp1_rep	CDS	17035801	17035873	.	+	2	Parent=Os02t0489400-01
Chr02	irgsp1_rep	CDS	17036471	17036801	.	+	1	Parent=Os02t0489400-01
Chr02	irgsp1_rep	CDS	17037437	17037612	.	+	0	Parent=Os02t0489400-01
Chr02	irgsp1_rep	CDS	17037825	17037903	.	+	1	Parent=Os02t0489400-01
Chr02	irgsp1_rep	three_prime_UTR	17037904	17038087	.	+	.	Parent=Os02t0489400-01
Chr02	irgsp1_rep	mRNA	17039977	17041137	.	+	.	ID=Os02t0489500-01;Name=Os02t0489500-01;Locus_id=Os02g0489500;Note=Conserved hypothetical protein.;Transcript_evidence=AK105149 (DDBJ%2C Best hit);ORF_evidence=A2XAL7 (UniProt);NIAS_FLcDNA=001-103-D03;Expression=AK105149;TENOR=Os02t0489500-01;KEGG=Os02t0489500-01
Chr02	irgsp1_rep	five_prime_UTR	17039977	17039983	.	+	.	Parent=Os02t0489500-01
Chr02	irgsp1_rep	CDS	17039984	17040955	.	+	0	Parent=Os02t0489500-01
Chr02	irgsp1_rep	three_prime_UTR	17040956	17041137	.	+	.	Parent=Os02t0489500-01
Chr02	irgsp1_rep	mRNA	17046737	17058490	.	+	.	ID=Os02t0489525-00;Name=Os02t0489525-00;Locus_id=Os02g0489525;Note=Hypothetical protein.;Transcript_evidence=tplb0021a04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0489525-00
Chr02	irgsp1_rep	five_prime_UTR	17046737	17046900	.	+	.	Parent=Os02t0489525-00
Chr02	irgsp1_rep	five_prime_UTR	17047012	17047106	.	+	.	Parent=Os02t0489525-00
Chr02	irgsp1_rep	five_prime_UTR	17047188	17047339	.	+	.	Parent=Os02t0489525-00
Chr02	irgsp1_rep	CDS	17047340	17047374	.	+	0	Parent=Os02t0489525-00
Chr02	irgsp1_rep	CDS	17047477	17047583	.	+	1	Parent=Os02t0489525-00
Chr02	irgsp1_rep	CDS	17047687	17047752	.	+	2	Parent=Os02t0489525-00
Chr02	irgsp1_rep	CDS	17047887	17047948	.	+	2	Parent=Os02t0489525-00
Chr02	irgsp1_rep	three_prime_UTR	17047949	17048033	.	+	.	Parent=Os02t0489525-00
Chr02	irgsp1_rep	three_prime_UTR	17048115	17048187	.	+	.	Parent=Os02t0489525-00
Chr02	irgsp1_rep	three_prime_UTR	17048267	17048391	.	+	.	Parent=Os02t0489525-00
Chr02	irgsp1_rep	three_prime_UTR	17048719	17048881	.	+	.	Parent=Os02t0489525-00
Chr02	irgsp1_rep	three_prime_UTR	17048964	17049055	.	+	.	Parent=Os02t0489525-00
Chr02	irgsp1_rep	three_prime_UTR	17049139	17049262	.	+	.	Parent=Os02t0489525-00
Chr02	irgsp1_rep	three_prime_UTR	17049356	17049411	.	+	.	Parent=Os02t0489525-00
Chr02	irgsp1_rep	three_prime_UTR	17049512	17049590	.	+	.	Parent=Os02t0489525-00
Chr02	irgsp1_rep	three_prime_UTR	17050748	17050847	.	+	.	Parent=Os02t0489525-00
Chr02	irgsp1_rep	three_prime_UTR	17050961	17051164	.	+	.	Parent=Os02t0489525-00
Chr02	irgsp1_rep	three_prime_UTR	17051326	17051431	.	+	.	Parent=Os02t0489525-00
Chr02	irgsp1_rep	three_prime_UTR	17051534	17051612	.	+	.	Parent=Os02t0489525-00
Chr02	irgsp1_rep	three_prime_UTR	17051682	17051731	.	+	.	Parent=Os02t0489525-00
Chr02	irgsp1_rep	three_prime_UTR	17051812	17051909	.	+	.	Parent=Os02t0489525-00
Chr02	irgsp1_rep	three_prime_UTR	17052185	17052277	.	+	.	Parent=Os02t0489525-00
Chr02	irgsp1_rep	three_prime_UTR	17052388	17052438	.	+	.	Parent=Os02t0489525-00
Chr02	irgsp1_rep	three_prime_UTR	17053615	17053770	.	+	.	Parent=Os02t0489525-00
Chr02	irgsp1_rep	three_prime_UTR	17054261	17054429	.	+	.	Parent=Os02t0489525-00
Chr02	irgsp1_rep	three_prime_UTR	17056774	17056903	.	+	.	Parent=Os02t0489525-00
Chr02	irgsp1_rep	three_prime_UTR	17056993	17057138	.	+	.	Parent=Os02t0489525-00
Chr02	irgsp1_rep	three_prime_UTR	17058315	17058490	.	+	.	Parent=Os02t0489525-00
Chr02	irgsp1_rep	mRNA	17046796	17054964	.	-	.	ID=Os02t0489550-00;Name=Os02t0489550-00;Locus_id=Os02g0489550;CGSNL Gene Symbol=SEC2;CGSNL Gene Name=SECRET AGENT 2;Oryzabase Gene Symbol Synonym(s)=OsSEC2;Note=Tetratricopeptide TPR-1 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6K769 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide TPR-1 (IPR001440),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);Oryzabase=22973;TENOR=Os02t0489550-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	17054693	17054964	.	-	0	Parent=Os02t0489550-00
Chr02	irgsp1_rep	CDS	17054289	17054364	.	-	1	Parent=Os02t0489550-00
Chr02	irgsp1_rep	CDS	17054131	17054187	.	-	0	Parent=Os02t0489550-00
Chr02	irgsp1_rep	CDS	17053628	17053747	.	-	0	Parent=Os02t0489550-00
Chr02	irgsp1_rep	CDS	17052389	17052451	.	-	0	Parent=Os02t0489550-00
Chr02	irgsp1_rep	CDS	17052200	17052278	.	-	0	Parent=Os02t0489550-00
Chr02	irgsp1_rep	CDS	17051813	17051922	.	-	2	Parent=Os02t0489550-00
Chr02	irgsp1_rep	CDS	17051679	17051732	.	-	0	Parent=Os02t0489550-00
Chr02	irgsp1_rep	CDS	17051542	17051609	.	-	0	Parent=Os02t0489550-00
Chr02	irgsp1_rep	CDS	17051333	17051435	.	-	1	Parent=Os02t0489550-00
Chr02	irgsp1_rep	CDS	17050968	17051170	.	-	0	Parent=Os02t0489550-00
Chr02	irgsp1_rep	CDS	17050756	17050852	.	-	1	Parent=Os02t0489550-00
Chr02	irgsp1_rep	CDS	17048282	17048392	.	-	0	Parent=Os02t0489550-00
Chr02	irgsp1_rep	CDS	17047906	17048033	.	-	0	Parent=Os02t0489550-00
Chr02	irgsp1_rep	CDS	17047687	17047769	.	-	1	Parent=Os02t0489550-00
Chr02	irgsp1_rep	CDS	17047478	17047583	.	-	2	Parent=Os02t0489550-00
Chr02	irgsp1_rep	CDS	17047024	17047144	.	-	1	Parent=Os02t0489550-00
Chr02	irgsp1_rep	CDS	17046796	17046909	.	-	0	Parent=Os02t0489550-00
Chr02	irgsp1_rep	mRNA	17055099	17057077	.	-	.	ID=Os02t0489600-01;Name=Os02t0489600-01;Locus_id=Os02g0489600;Note=Conserved hypothetical protein.;Transcript_evidence=AK107636 (DDBJ%2C Best hit);ORF_evidence=B9F022 (UniProt);NIAS_FLcDNA=002-131-E09;Expression=AK107636;TENOR=Os02t0489600-01;KEGG=Os02t0489600-01
Chr02	irgsp1_rep	five_prime_UTR	17056785	17057077	.	-	.	Parent=Os02t0489600-01
Chr02	irgsp1_rep	CDS	17056572	17056784	.	-	0	Parent=Os02t0489600-01
Chr02	irgsp1_rep	three_prime_UTR	17055810	17056571	.	-	.	Parent=Os02t0489600-01
Chr02	irgsp1_rep	three_prime_UTR	17055099	17055225	.	-	.	Parent=Os02t0489600-01
Chr02	irgsp1_rep	mRNA	17074638	17077487	.	-	.	ID=Os02t0489700-00;Name=Os02t0489700-00;Locus_id=Os02g0489700;Note=Non-protein coding transcript.;Transcript_evidence=BT086886 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0489700-00
Chr02	irgsp1_rep	exon	17077409	17077487	.	-	.	Parent=Os02t0489700-00
Chr02	irgsp1_rep	exon	17076393	17076483	.	-	.	Parent=Os02t0489700-00
Chr02	irgsp1_rep	exon	17075797	17075988	.	-	.	Parent=Os02t0489700-00
Chr02	irgsp1_rep	exon	17075330	17075483	.	-	.	Parent=Os02t0489700-00
Chr02	irgsp1_rep	exon	17075159	17075233	.	-	.	Parent=Os02t0489700-00
Chr02	irgsp1_rep	exon	17074638	17074791	.	-	.	Parent=Os02t0489700-00
Chr02	irgsp1_rep	mRNA	17078729	17081901	.	+	.	ID=Os02t0489800-00;Name=Os02t0489800-00;Locus_id=Os02g0489800;Oryzabase Gene Symbol Synonym(s)=SIP27;Oryzabase Gene Name Synonym(s)=SKIP interacting protein 27%2C SKIPa-interacting protein 27%2C SKIPa-interacting protein 27;Note=Similar to SKIP interacting protein 18 (Fragment).;Transcript_evidence=EU368717 (DDBJ%2C Best hit);ORF_evidence=B8Q8A4 (UniProt);InterPro=Kinesin-related conserved domain (IPR010544);Oryzabase=9959;TENOR=Os02t0489800-00;KEGG=Os02t0489800-00
Chr02	irgsp1_rep	five_prime_UTR	17078729	17078850	.	+	.	Parent=Os02t0489800-00
Chr02	irgsp1_rep	five_prime_UTR	17078915	17079010	.	+	.	Parent=Os02t0489800-00
Chr02	irgsp1_rep	CDS	17079011	17079490	.	+	0	Parent=Os02t0489800-00
Chr02	irgsp1_rep	CDS	17079582	17079680	.	+	0	Parent=Os02t0489800-00
Chr02	irgsp1_rep	CDS	17079753	17079905	.	+	0	Parent=Os02t0489800-00
Chr02	irgsp1_rep	CDS	17080012	17080776	.	+	0	Parent=Os02t0489800-00
Chr02	irgsp1_rep	CDS	17081602	17081901	.	+	0	Parent=Os02t0489800-00
Chr02	irgsp1_rep	mRNA	17085385	17088925	.	+	.	ID=Os02t0490000-01;Name=Os02t0490000-01;Locus_id=Os02g0490000;RAP-DB Gene Symbol Synonym(s)=OsPUB73;RAP-DB Gene Name Synonym(s)=U-box domain-containing protein 73;CGSNL Gene Symbol=PUB73;CGSNL Gene Name=PLANT U-BOX-CONTAINING PROTEIN 73;Oryzabase Gene Symbol Synonym(s)=OsPUB73;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 73%2C U-box protein 73;Note=U-box domain-containing protein 73%2C Regulation of male reproductive development;Transcript_evidence=AK106789;ORF_evidence=Q6K762;GO=Biological Process: protein ubiquitination (GO:0016567),Molecular Function: ubiquitin-protein transferase activity (GO:0004842);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),U box domain (IPR003613);NIAS_FLcDNA=002-116-A04;Manual Curation=December 13%2C 2019;Literature_PMID=31823718;Oryzabase=17862;Expression=AK106789;TENOR=Os02t0490000-01;KEGG=Os02t0490000-01
Chr02	irgsp1_rep	five_prime_UTR	17085385	17085552	.	+	.	Parent=Os02t0490000-01
Chr02	irgsp1_rep	CDS	17085553	17086113	.	+	0	Parent=Os02t0490000-01
Chr02	irgsp1_rep	CDS	17086678	17086734	.	+	0	Parent=Os02t0490000-01
Chr02	irgsp1_rep	CDS	17087578	17088720	.	+	0	Parent=Os02t0490000-01
Chr02	irgsp1_rep	three_prime_UTR	17088721	17088925	.	+	.	Parent=Os02t0490000-01
Chr02	irgsp1_rep	mRNA	17118788	17120662	.	+	.	ID=Os02t0490500-01;Name=Os02t0490500-01;Locus_id=Os02g0490500;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK071953 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J013082E19;Expression=AK071953;TENOR=Os02t0490500-01;KEGG=Os02t0490500-01
Chr02	irgsp1_rep	five_prime_UTR	17118788	17118910	.	+	.	Parent=Os02t0490500-01
Chr02	irgsp1_rep	CDS	17118911	17119406	.	+	0	Parent=Os02t0490500-01
Chr02	irgsp1_rep	CDS	17119499	17120487	.	+	2	Parent=Os02t0490500-01
Chr02	irgsp1_rep	three_prime_UTR	17120488	17120662	.	+	.	Parent=Os02t0490500-01
Chr02	irgsp1_rep	mRNA	17118840	17120662	.	+	.	ID=Os02t0490500-02;Name=Os02t0490500-02;Locus_id=Os02g0490500;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK099055 (DDBJ%2C Best hit);ORF_evidence=B8AI00 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J013153D03;Expression=AK099055;TENOR=Os02t0490500-02;KEGG=Os02t0490500-02
Chr02	irgsp1_rep	five_prime_UTR	17118840	17118910	.	+	.	Parent=Os02t0490500-02
Chr02	irgsp1_rep	CDS	17118911	17119406	.	+	0	Parent=Os02t0490500-02
Chr02	irgsp1_rep	CDS	17119499	17120487	.	+	2	Parent=Os02t0490500-02
Chr02	irgsp1_rep	three_prime_UTR	17120488	17120662	.	+	.	Parent=Os02t0490500-02
Chr02	irgsp1_rep	mRNA	17150510	17152509	.	+	.	ID=Os02t0491300-01;Name=Os02t0491300-01;Locus_id=Os02g0491300;RAP-DB Gene Symbol Synonym(s)=MTR1;RAP-DB Gene Name Synonym(s)=MICROSPORE AND TAPETUM REGULATOR1;CGSNL Gene Symbol=MTR1;CGSNL Gene Name=MICROSPORE AND TAPETUM REGULATOR1;Oryzabase Gene Symbol Synonym(s)=OsMTR1;Oryzabase Gene Name Synonym(s)=microspore and tapetum regulator 1;Note=Secretory fasciclin glycoprotein%2C Regulation of anther development and pollen formation;Transcript_evidence=AK241775;ORF_evidence=Q6K5Q2;InterPro=FAS1 domain (IPR000782);NIAS_FLcDNA=J065205O09;Manual Curation=April 26%2C 2017;Literature_PMID=22698279;Oryzabase=21586;TENOR=Os02t0491300-01;KEGG=Os02t0491300-01
Chr02	irgsp1_rep	five_prime_UTR	17150510	17150564	.	+	.	Parent=Os02t0491300-01
Chr02	irgsp1_rep	CDS	17150565	17152316	.	+	0	Parent=Os02t0491300-01
Chr02	irgsp1_rep	three_prime_UTR	17152317	17152509	.	+	.	Parent=Os02t0491300-01
Chr02	irgsp1_rep	mRNA	17156517	17160895	.	-	.	ID=Os02t0491400-01;Name=Os02t0491400-01;Locus_id=Os02g0491400;Oryzabase Gene Symbol Synonym(s)=OsFKBP62c%2C OsFKBP75;Oryzabase Gene Name Synonym(s)=FK506 binding protein 62c%2C FK506 binding protein 75;Note=Similar to Peptidylprolyl isomerase.;Transcript_evidence=AK073233 (DDBJ%2C Best hit);ORF_evidence=B9F026 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type%2C domain (IPR001179),Tetratricopeptide TPR-1 (IPR001440),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734),Elongated TPR repeat-containing domain (IPR023114),Peptidyl-prolyl cis-trans isomerase%2C FKBP-type (IPR023566);NIAS_FLcDNA=J033023H01;Oryzabase=10049;Expression=AK073233;TENOR=Os02t0491400-01;KEGG=Os02t0491400-01 (EC:5.2.1.8)
Chr02	irgsp1_rep	five_prime_UTR	17160830	17160895	.	-	.	Parent=Os02t0491400-01
Chr02	irgsp1_rep	CDS	17160478	17160829	.	-	0	Parent=Os02t0491400-01
Chr02	irgsp1_rep	CDS	17160262	17160348	.	-	2	Parent=Os02t0491400-01
Chr02	irgsp1_rep	CDS	17159159	17159419	.	-	2	Parent=Os02t0491400-01
Chr02	irgsp1_rep	CDS	17158995	17159069	.	-	2	Parent=Os02t0491400-01
Chr02	irgsp1_rep	CDS	17158832	17158912	.	-	2	Parent=Os02t0491400-01
Chr02	irgsp1_rep	CDS	17158559	17158753	.	-	2	Parent=Os02t0491400-01
Chr02	irgsp1_rep	CDS	17158188	17158453	.	-	2	Parent=Os02t0491400-01
Chr02	irgsp1_rep	CDS	17157975	17158100	.	-	0	Parent=Os02t0491400-01
Chr02	irgsp1_rep	CDS	17157743	17157889	.	-	0	Parent=Os02t0491400-01
Chr02	irgsp1_rep	CDS	17157536	17157663	.	-	0	Parent=Os02t0491400-01
Chr02	irgsp1_rep	CDS	17157056	17157176	.	-	1	Parent=Os02t0491400-01
Chr02	irgsp1_rep	CDS	17156742	17156951	.	-	0	Parent=Os02t0491400-01
Chr02	irgsp1_rep	three_prime_UTR	17156517	17156741	.	-	.	Parent=Os02t0491400-01
Chr02	irgsp1_rep	mRNA	17165188	17165997	.	-	.	ID=Os02t0491600-00;Name=Os02t0491600-00;Locus_id=Os02g0491600;CGSNL Gene Symbol=GLP2-1;CGSNL Gene Name=GERMIN-LIKE PROTEIN 2-1;Oryzabase Gene Symbol Synonym(s)=OsGLP2-1;Oryzabase Gene Name Synonym(s)=Germin-like protein 2-1;Note=Similar to Oxalate oxidase-like protein or germin-like protein (Germin-like 8) (Germin-like 12).;Transcript_evidence=Q6K5Q0 (UniProt);ORF_evidence=Q6K5Q0 (UniProt);GO=Cellular Component: apoplast (GO:0048046),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),Germin%2C manganese binding site (IPR019780);Oryzabase=21419;TENOR=Os02t0491600-00
Chr02	irgsp1_rep	CDS	17165883	17165997	.	-	0	Parent=Os02t0491600-00
Chr02	irgsp1_rep	CDS	17165188	17165723	.	-	2	Parent=Os02t0491600-00
Chr02	irgsp1_rep	mRNA	17167417	17168289	.	+	.	ID=Os02t0491700-00;Name=Os02t0491700-00;Locus_id=Os02g0491700;CGSNL Gene Symbol=GLP2-2;CGSNL Gene Name=GERMIN-LIKE PROTEIN 2-2;Oryzabase Gene Symbol Synonym(s)=OsGLP2-2;Oryzabase Gene Name Synonym(s)=Germin-like protein 2-2;Note=Putative germin-like protein 2-2.;Transcript_evidence=FP097394 (DDBJ);ORF_evidence=B3TLX7 (UniProt);GO=Cellular Component: apoplast (GO:0048046),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),Germin%2C manganese binding site (IPR019780);Oryzabase=21420;TENOR=Os02t0491700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	17167417	17167552	.	+	0	Parent=Os02t0491700-00
Chr02	irgsp1_rep	CDS	17167642	17168177	.	+	2	Parent=Os02t0491700-00
Chr02	irgsp1_rep	three_prime_UTR	17168178	17168289	.	+	.	Parent=Os02t0491700-00
Chr02	irgsp1_rep	mRNA	17175222	17175893	.	+	.	ID=Os02t0491800-00;Name=Os02t0491800-00;Locus_id=Os02g0491800;CGSNL Gene Symbol=GLP2-3;CGSNL Gene Name=GERMIN-LIKE PROTEIN 2-3;Oryzabase Gene Symbol Synonym(s)=OsGLP2-3;Oryzabase Gene Name Synonym(s)=Germin-like protein 2-3;Note=Similar to Germin-like protein subfamily 1 member 15 precursor.;Transcript_evidence=Q6K5P8 (UniProt);ORF_evidence=Q6K5P8 (UniProt);GO=Cellular Component: apoplast (GO:0048046),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),Germin%2C manganese binding site (IPR019780);Oryzabase=21421;TENOR=Os02t0491800-00
Chr02	irgsp1_rep	CDS	17175222	17175893	.	+	0	Parent=Os02t0491800-00
Chr02	irgsp1_rep	mRNA	17183488	17191760	.	-	.	ID=Os02t0491900-00;Name=Os02t0491900-00;Locus_id=Os02g0491900;Note=Ankyrin repeat domain containing protein.;Transcript_evidence=tplb0057i24 (Wheat FLcDNA);ORF_evidence=B8AIC5 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Tetratricopeptide-like helical (IPR011990),Ankyrin repeat-containing domain (IPR020683);TENOR=Os02t0491900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	17191713	17191760	.	-	.	Parent=Os02t0491900-00
Chr02	irgsp1_rep	CDS	17191601	17191712	.	-	0	Parent=Os02t0491900-00
Chr02	irgsp1_rep	CDS	17191322	17191495	.	-	2	Parent=Os02t0491900-00
Chr02	irgsp1_rep	CDS	17191020	17191151	.	-	2	Parent=Os02t0491900-00
Chr02	irgsp1_rep	CDS	17190491	17190630	.	-	2	Parent=Os02t0491900-00
Chr02	irgsp1_rep	CDS	17189120	17189206	.	-	0	Parent=Os02t0491900-00
Chr02	irgsp1_rep	CDS	17188890	17189012	.	-	0	Parent=Os02t0491900-00
Chr02	irgsp1_rep	CDS	17187449	17187598	.	-	0	Parent=Os02t0491900-00
Chr02	irgsp1_rep	CDS	17183842	17183943	.	-	0	Parent=Os02t0491900-00
Chr02	irgsp1_rep	CDS	17183488	17183688	.	-	0	Parent=Os02t0491900-00
Chr02	irgsp1_rep	mRNA	17196142	17204631	.	-	.	ID=Os02t0492000-01;Name=Os02t0492000-01;Locus_id=Os02g0492000;Note=Ankyrin repeat containing protein.;Transcript_evidence=AK119566 (DDBJ%2C Best hit);ORF_evidence=Q84YE2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=002-117-A05;Expression=AK119566;TENOR=Os02t0492000-01;KEGG=Os02t0492000-01
Chr02	irgsp1_rep	five_prime_UTR	17204530	17204631	.	-	.	Parent=Os02t0492000-01
Chr02	irgsp1_rep	CDS	17204508	17204529	.	-	0	Parent=Os02t0492000-01
Chr02	irgsp1_rep	CDS	17204366	17204431	.	-	2	Parent=Os02t0492000-01
Chr02	irgsp1_rep	CDS	17204056	17204226	.	-	2	Parent=Os02t0492000-01
Chr02	irgsp1_rep	CDS	17203051	17203182	.	-	2	Parent=Os02t0492000-01
Chr02	irgsp1_rep	CDS	17201501	17201640	.	-	2	Parent=Os02t0492000-01
Chr02	irgsp1_rep	CDS	17200275	17200361	.	-	0	Parent=Os02t0492000-01
Chr02	irgsp1_rep	CDS	17200001	17200123	.	-	0	Parent=Os02t0492000-01
Chr02	irgsp1_rep	CDS	17199096	17199203	.	-	0	Parent=Os02t0492000-01
Chr02	irgsp1_rep	CDS	17197784	17197843	.	-	0	Parent=Os02t0492000-01
Chr02	irgsp1_rep	three_prime_UTR	17197742	17197783	.	-	.	Parent=Os02t0492000-01
Chr02	irgsp1_rep	three_prime_UTR	17196790	17196960	.	-	.	Parent=Os02t0492000-01
Chr02	irgsp1_rep	three_prime_UTR	17196624	17196701	.	-	.	Parent=Os02t0492000-01
Chr02	irgsp1_rep	three_prime_UTR	17196142	17196421	.	-	.	Parent=Os02t0492000-01
Chr02	irgsp1_rep	mRNA	17196219	17204516	.	-	.	ID=Os02t0492000-02;Name=Os02t0492000-02;Locus_id=Os02g0492000;Note=Similar to Ankyrin-like protein-like protein.;Transcript_evidence=AK064117 (DDBJ%2C Best hit);ORF_evidence=Q84YE2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=002-102-B07;Expression=AK064117;TENOR=Os02t0492000-02;KEGG=Os02t0492000-02
Chr02	irgsp1_rep	five_prime_UTR	17204457	17204516	.	-	.	Parent=Os02t0492000-02
Chr02	irgsp1_rep	CDS	17204366	17204456	.	-	0	Parent=Os02t0492000-02
Chr02	irgsp1_rep	CDS	17204056	17204226	.	-	2	Parent=Os02t0492000-02
Chr02	irgsp1_rep	CDS	17203051	17203182	.	-	2	Parent=Os02t0492000-02
Chr02	irgsp1_rep	CDS	17201501	17201640	.	-	2	Parent=Os02t0492000-02
Chr02	irgsp1_rep	CDS	17200275	17200361	.	-	0	Parent=Os02t0492000-02
Chr02	irgsp1_rep	CDS	17200001	17200123	.	-	0	Parent=Os02t0492000-02
Chr02	irgsp1_rep	CDS	17199096	17199203	.	-	0	Parent=Os02t0492000-02
Chr02	irgsp1_rep	CDS	17197784	17197843	.	-	0	Parent=Os02t0492000-02
Chr02	irgsp1_rep	three_prime_UTR	17197742	17197783	.	-	.	Parent=Os02t0492000-02
Chr02	irgsp1_rep	three_prime_UTR	17196790	17196960	.	-	.	Parent=Os02t0492000-02
Chr02	irgsp1_rep	three_prime_UTR	17196624	17196701	.	-	.	Parent=Os02t0492000-02
Chr02	irgsp1_rep	three_prime_UTR	17196219	17196421	.	-	.	Parent=Os02t0492000-02
Chr02	irgsp1_rep	mRNA	17223614	17227328	.	+	.	ID=Os02t0492500-01;Name=Os02t0492500-01;Locus_id=Os02g0492500;Note=Domain of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK107598 (DDBJ%2C Best hit);ORF_evidence=A2X504 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=002-131-B02;TENOR=Os02t0492500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	17223614	17223639	.	+	.	Parent=Os02t0492500-01
Chr02	irgsp1_rep	CDS	17223640	17224985	.	+	0	Parent=Os02t0492500-01
Chr02	irgsp1_rep	CDS	17227117	17227180	.	+	1	Parent=Os02t0492500-01
Chr02	irgsp1_rep	three_prime_UTR	17227181	17227328	.	+	.	Parent=Os02t0492500-01
Chr02	irgsp1_rep	mRNA	17229100	17236190	.	-	.	ID=Os02t0492600-00;Name=Os02t0492600-00;Locus_id=Os02g0492600;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK333681 (DDBJ);ORF_evidence=Q6K5P1 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide TPR2 (IPR013105),Tetratricopeptide repeat (IPR019734);TENOR=Os02t0492600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	17236115	17236190	.	-	.	Parent=Os02t0492600-00
Chr02	irgsp1_rep	five_prime_UTR	17235834	17236010	.	-	.	Parent=Os02t0492600-00
Chr02	irgsp1_rep	five_prime_UTR	17234995	17235678	.	-	.	Parent=Os02t0492600-00
Chr02	irgsp1_rep	five_prime_UTR	17231628	17231652	.	-	.	Parent=Os02t0492600-00
Chr02	irgsp1_rep	CDS	17231475	17231627	.	-	0	Parent=Os02t0492600-00
Chr02	irgsp1_rep	CDS	17229689	17229790	.	-	0	Parent=Os02t0492600-00
Chr02	irgsp1_rep	CDS	17229287	17229457	.	-	0	Parent=Os02t0492600-00
Chr02	irgsp1_rep	CDS	17229100	17229207	.	-	0	Parent=Os02t0492600-00
Chr02	irgsp1_rep	mRNA	17244227	17244732	.	+	.	ID=Os02t0492800-00;Name=Os02t0492800-00;Locus_id=Os02g0492800;Note=Conserved hypothetical protein.;Transcript_evidence=FP094532 (DDBJ);ORF_evidence=Q6K5N6 (UniProt);TENOR=Os02t0492800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	17244227	17244390	.	+	.	Parent=Os02t0492800-00
Chr02	irgsp1_rep	CDS	17244391	17244732	.	+	0	Parent=Os02t0492800-00
Chr02	irgsp1_rep	mRNA	17245021	17254879	.	-	.	ID=Os02t0492900-01;Name=Os02t0492900-01;Locus_id=Os02g0492900;Note=Similar to Ankyrin-like protein-like protein.;Transcript_evidence=AK110813 (DDBJ%2C Best hit);ORF_evidence=Q84YE2 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=002-171-F07;Expression=AK110813;TENOR=Os02t0492900-01;KEGG=Os02t0492900-01
Chr02	irgsp1_rep	five_prime_UTR	17254815	17254879	.	-	.	Parent=Os02t0492900-01
Chr02	irgsp1_rep	CDS	17254793	17254814	.	-	0	Parent=Os02t0492900-01
Chr02	irgsp1_rep	CDS	17254649	17254714	.	-	2	Parent=Os02t0492900-01
Chr02	irgsp1_rep	CDS	17254310	17254480	.	-	2	Parent=Os02t0492900-01
Chr02	irgsp1_rep	CDS	17252442	17252581	.	-	2	Parent=Os02t0492900-01
Chr02	irgsp1_rep	CDS	17250719	17250805	.	-	0	Parent=Os02t0492900-01
Chr02	irgsp1_rep	CDS	17250446	17250568	.	-	0	Parent=Os02t0492900-01
Chr02	irgsp1_rep	CDS	17249030	17249173	.	-	0	Parent=Os02t0492900-01
Chr02	irgsp1_rep	CDS	17247399	17247500	.	-	0	Parent=Os02t0492900-01
Chr02	irgsp1_rep	CDS	17245730	17245900	.	-	0	Parent=Os02t0492900-01
Chr02	irgsp1_rep	CDS	17245550	17245629	.	-	0	Parent=Os02t0492900-01
Chr02	irgsp1_rep	CDS	17245267	17245306	.	-	1	Parent=Os02t0492900-01
Chr02	irgsp1_rep	three_prime_UTR	17245021	17245266	.	-	.	Parent=Os02t0492900-01
Chr02	irgsp1_rep	mRNA	17258676	17265927	.	-	.	ID=Os02t0493050-00;Name=Os02t0493050-00;Locus_id=Os02g0493050;Note=Ankyrin repeat domain containing protein.;Transcript_evidence=AK372967 (DDBJ);ORF_evidence=A2X508 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat (IPR019734),Ankyrin repeat-containing domain (IPR020683);TENOR=Os02t0493050-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	17265837	17265927	.	-	0	Parent=Os02t0493050-00
Chr02	irgsp1_rep	CDS	17265533	17265703	.	-	2	Parent=Os02t0493050-00
Chr02	irgsp1_rep	CDS	17263628	17263752	.	-	2	Parent=Os02t0493050-00
Chr02	irgsp1_rep	CDS	17262289	17262435	.	-	0	Parent=Os02t0493050-00
Chr02	irgsp1_rep	CDS	17260999	17261085	.	-	0	Parent=Os02t0493050-00
Chr02	irgsp1_rep	CDS	17260767	17260889	.	-	0	Parent=Os02t0493050-00
Chr02	irgsp1_rep	CDS	17260434	17260583	.	-	0	Parent=Os02t0493050-00
Chr02	irgsp1_rep	CDS	17259658	17259759	.	-	0	Parent=Os02t0493050-00
Chr02	irgsp1_rep	CDS	17258845	17259015	.	-	0	Parent=Os02t0493050-00
Chr02	irgsp1_rep	CDS	17258676	17258759	.	-	0	Parent=Os02t0493050-00
Chr02	irgsp1_rep	mRNA	17274145	17275940	.	+	.	ID=Os02t0493087-00;Name=Os02t0493087-00;Locus_id=Os02g0493087;Note=Hypothetical protein.;Transcript_evidence=tplb0028o22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0493087-00
Chr02	irgsp1_rep	five_prime_UTR	17274145	17274411	.	+	.	Parent=Os02t0493087-00
Chr02	irgsp1_rep	five_prime_UTR	17274570	17274727	.	+	.	Parent=Os02t0493087-00
Chr02	irgsp1_rep	five_prime_UTR	17274849	17275053	.	+	.	Parent=Os02t0493087-00
Chr02	irgsp1_rep	CDS	17275054	17275940	.	+	0	Parent=Os02t0493087-00
Chr02	irgsp1_rep	mRNA	17274467	17275865	.	-	.	ID=Os02t0493100-00;Name=Os02t0493100-00;Locus_id=Os02g0493100;Oryzabase Gene Symbol Synonym(s)=OsRALyase%2C OsFbox090%2C OsFbox90%2C Os_F0337;Oryzabase Gene Name Synonym(s)=Ribosomal RNA apurinic site specific lyase%2C F-box protein 90;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK374186 (DDBJ);ORF_evidence=Q6K5N2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=9405;TENOR=Os02t0493100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	17274852	17275865	.	-	0	Parent=Os02t0493100-00
Chr02	irgsp1_rep	CDS	17274467	17274730	.	-	0	Parent=Os02t0493100-00
Chr02	irgsp1_rep	mRNA	17276127	17276767	.	-	.	ID=Os02t0493200-01;Name=Os02t0493200-01;Locus_id=Os02g0493200;Note=Non-protein coding transcript.;Transcript_evidence=AK064502 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-111-D06;TENOR=Os02t0493200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	exon	17276127	17276767	.	-	.	Parent=Os02t0493200-01
Chr02	irgsp1_rep	mRNA	17277320	17290200	.	-	.	ID=Os02t0493300-01;Name=Os02t0493300-01;Locus_id=Os02g0493300;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK069981 (DDBJ%2C Best hit);ORF_evidence=Q84YE2 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J023035C15;Expression=AK069981;TENOR=Os02t0493300-01;KEGG=Os02t0493300-01
Chr02	irgsp1_rep	five_prime_UTR	17290132	17290200	.	-	.	Parent=Os02t0493300-01
Chr02	irgsp1_rep	CDS	17289993	17290131	.	-	0	Parent=Os02t0493300-01
Chr02	irgsp1_rep	CDS	17289738	17289908	.	-	2	Parent=Os02t0493300-01
Chr02	irgsp1_rep	CDS	17287926	17288057	.	-	2	Parent=Os02t0493300-01
Chr02	irgsp1_rep	CDS	17286487	17286626	.	-	2	Parent=Os02t0493300-01
Chr02	irgsp1_rep	CDS	17285724	17285810	.	-	0	Parent=Os02t0493300-01
Chr02	irgsp1_rep	CDS	17284140	17284256	.	-	0	Parent=Os02t0493300-01
Chr02	irgsp1_rep	CDS	17283532	17283681	.	-	0	Parent=Os02t0493300-01
Chr02	irgsp1_rep	CDS	17280054	17280158	.	-	0	Parent=Os02t0493300-01
Chr02	irgsp1_rep	CDS	17278812	17278982	.	-	0	Parent=Os02t0493300-01
Chr02	irgsp1_rep	CDS	17278651	17278730	.	-	0	Parent=Os02t0493300-01
Chr02	irgsp1_rep	CDS	17278375	17278426	.	-	1	Parent=Os02t0493300-01
Chr02	irgsp1_rep	three_prime_UTR	17278340	17278374	.	-	.	Parent=Os02t0493300-01
Chr02	irgsp1_rep	three_prime_UTR	17277320	17277759	.	-	.	Parent=Os02t0493300-01
Chr02	irgsp1_rep	mRNA	17278811	17289905	.	+	.	ID=Os02t0493650-00;Name=Os02t0493650-00;Locus_id=Os02g0493650;Note=Non-protein coding transcript.;Transcript_evidence=tplb0054e10 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os02t0493650-00
Chr02	irgsp1_rep	exon	17278811	17279075	.	+	.	Parent=Os02t0493650-00
Chr02	irgsp1_rep	exon	17283520	17283831	.	+	.	Parent=Os02t0493650-00
Chr02	irgsp1_rep	exon	17286418	17286628	.	+	.	Parent=Os02t0493650-00
Chr02	irgsp1_rep	exon	17287938	17288048	.	+	.	Parent=Os02t0493650-00
Chr02	irgsp1_rep	exon	17289727	17289905	.	+	.	Parent=Os02t0493650-00
Chr02	irgsp1_rep	mRNA	17308584	17315834	.	-	.	ID=Os02t0494000-00;Name=Os02t0494000-00;Locus_id=Os02g0494000;Note=Ankyrin repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6K6R8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);TENOR=Os02t0494000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	17315648	17315834	.	-	0	Parent=Os02t0494000-00
Chr02	irgsp1_rep	CDS	17314647	17314778	.	-	2	Parent=Os02t0494000-00
Chr02	irgsp1_rep	CDS	17313887	17314026	.	-	2	Parent=Os02t0494000-00
Chr02	irgsp1_rep	CDS	17313313	17313396	.	-	0	Parent=Os02t0494000-00
Chr02	irgsp1_rep	CDS	17312823	17312936	.	-	0	Parent=Os02t0494000-00
Chr02	irgsp1_rep	CDS	17310781	17310882	.	-	0	Parent=Os02t0494000-00
Chr02	irgsp1_rep	CDS	17309184	17309263	.	-	0	Parent=Os02t0494000-00
Chr02	irgsp1_rep	CDS	17308584	17308632	.	-	1	Parent=Os02t0494000-00
Chr02	irgsp1_rep	mRNA	17327569	17335567	.	-	.	ID=Os02t0494400-01;Name=Os02t0494400-01;Locus_id=Os02g0494400;Note=Similar to TPR Domain containing protein%2C expressed.;Transcript_evidence=AK287440 (DDBJ%2C Best hit);ORF_evidence=Q10GN0 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J043015B19;TENOR=Os02t0494400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	17335565	17335567	.	-	.	Parent=Os02t0494400-01
Chr02	irgsp1_rep	CDS	17335507	17335564	.	-	0	Parent=Os02t0494400-01
Chr02	irgsp1_rep	CDS	17335183	17335368	.	-	2	Parent=Os02t0494400-01
Chr02	irgsp1_rep	CDS	17334407	17334538	.	-	2	Parent=Os02t0494400-01
Chr02	irgsp1_rep	CDS	17333498	17333637	.	-	2	Parent=Os02t0494400-01
Chr02	irgsp1_rep	CDS	17332360	17332446	.	-	0	Parent=Os02t0494400-01
Chr02	irgsp1_rep	CDS	17331872	17331982	.	-	0	Parent=Os02t0494400-01
Chr02	irgsp1_rep	CDS	17330131	17330232	.	-	0	Parent=Os02t0494400-01
Chr02	irgsp1_rep	CDS	17329040	17329210	.	-	0	Parent=Os02t0494400-01
Chr02	irgsp1_rep	CDS	17328877	17328956	.	-	0	Parent=Os02t0494400-01
Chr02	irgsp1_rep	CDS	17328073	17328121	.	-	1	Parent=Os02t0494400-01
Chr02	irgsp1_rep	three_prime_UTR	17327569	17328072	.	-	.	Parent=Os02t0494400-01
Chr02	irgsp1_rep	mRNA	17339028	17342514	.	+	.	ID=Os02t0494600-01;Name=Os02t0494600-01;Locus_id=Os02g0494600;Note=Conserved hypothetical protein.;Transcript_evidence=AK287783 (DDBJ%2C Best hit);ORF_evidence=Q6K6R5 (UniProt);NIAS_FLcDNA=J065171K21;TENOR=Os02t0494600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	17339028	17339029	.	+	.	Parent=Os02t0494600-01
Chr02	irgsp1_rep	CDS	17339030	17339338	.	+	0	Parent=Os02t0494600-01
Chr02	irgsp1_rep	CDS	17339793	17339960	.	+	0	Parent=Os02t0494600-01
Chr02	irgsp1_rep	CDS	17341337	17341447	.	+	0	Parent=Os02t0494600-01
Chr02	irgsp1_rep	CDS	17341848	17342087	.	+	0	Parent=Os02t0494600-01
Chr02	irgsp1_rep	three_prime_UTR	17342088	17342514	.	+	.	Parent=Os02t0494600-01
Chr02	irgsp1_rep	mRNA	17358716	17369016	.	+	.	ID=Os02t0494700-00;Name=Os02t0494700-00;Locus_id=Os02g0494700;Oryzabase Gene Symbol Synonym(s)=ROS1B;Oryzabase Gene Name Synonym(s)=REPRESSOR OF SILENCING 1B;Note=Similar to Repressor of silencing 1.;Transcript_evidence=BT055666 (DDBJ);ORF_evidence=A4PF88 (UniProt);Oryzabase=12350;TENOR=Os02t0494700-00;KEGG=Os02t0494700-00 (EC:4.2.99.18)
Chr02	irgsp1_rep	CDS	17358716	17360023	.	+	0	Parent=Os02t0494700-00
Chr02	irgsp1_rep	three_prime_UTR	17360024	17360056	.	+	.	Parent=Os02t0494700-00
Chr02	irgsp1_rep	three_prime_UTR	17360216	17360295	.	+	.	Parent=Os02t0494700-00
Chr02	irgsp1_rep	three_prime_UTR	17360667	17360751	.	+	.	Parent=Os02t0494700-00
Chr02	irgsp1_rep	three_prime_UTR	17360832	17360923	.	+	.	Parent=Os02t0494700-00
Chr02	irgsp1_rep	three_prime_UTR	17361297	17361365	.	+	.	Parent=Os02t0494700-00
Chr02	irgsp1_rep	three_prime_UTR	17361445	17361481	.	+	.	Parent=Os02t0494700-00
Chr02	irgsp1_rep	three_prime_UTR	17361569	17361651	.	+	.	Parent=Os02t0494700-00
Chr02	irgsp1_rep	three_prime_UTR	17361913	17362356	.	+	.	Parent=Os02t0494700-00
Chr02	irgsp1_rep	three_prime_UTR	17362463	17362499	.	+	.	Parent=Os02t0494700-00
Chr02	irgsp1_rep	three_prime_UTR	17362646	17362700	.	+	.	Parent=Os02t0494700-00
Chr02	irgsp1_rep	three_prime_UTR	17362770	17362916	.	+	.	Parent=Os02t0494700-00
Chr02	irgsp1_rep	three_prime_UTR	17363004	17363069	.	+	.	Parent=Os02t0494700-00
Chr02	irgsp1_rep	three_prime_UTR	17363287	17363401	.	+	.	Parent=Os02t0494700-00
Chr02	irgsp1_rep	three_prime_UTR	17363854	17363892	.	+	.	Parent=Os02t0494700-00
Chr02	irgsp1_rep	three_prime_UTR	17368721	17369016	.	+	.	Parent=Os02t0494700-00
Chr02	irgsp1_rep	mRNA	17406212	17411120	.	-	.	ID=Os02t0495400-01;Name=Os02t0495400-01;Locus_id=Os02g0495400;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK103135 (DDBJ%2C Best hit);ORF_evidence=B9EZR7 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989);NIAS_FLcDNA=J033120D14;TENOR=Os02t0495400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	17410701	17411120	.	-	0	Parent=Os02t0495400-01
Chr02	irgsp1_rep	CDS	17409412	17409666	.	-	0	Parent=Os02t0495400-01
Chr02	irgsp1_rep	CDS	17407779	17408804	.	-	0	Parent=Os02t0495400-01
Chr02	irgsp1_rep	CDS	17407608	17407679	.	-	0	Parent=Os02t0495400-01
Chr02	irgsp1_rep	CDS	17407273	17407504	.	-	0	Parent=Os02t0495400-01
Chr02	irgsp1_rep	CDS	17406528	17406535	.	-	2	Parent=Os02t0495400-01
Chr02	irgsp1_rep	three_prime_UTR	17406212	17406527	.	-	.	Parent=Os02t0495400-01
Chr02	irgsp1_rep	mRNA	17416442	17419157	.	+	.	ID=Os02t0495900-01;Name=Os02t0495900-01;Locus_id=Os02g0495900;Note=Similar to predicted protein.;Transcript_evidence=AK242426 (DDBJ%2C Best hit);ORF_evidence=A3A732 (UniProt);NIAS_FLcDNA=J080087H24;TENOR=Os02t0495900-01;KEGG=Os02t0495900-01
Chr02	irgsp1_rep	five_prime_UTR	17416442	17416485	.	+	.	Parent=Os02t0495900-01
Chr02	irgsp1_rep	CDS	17416486	17416686	.	+	0	Parent=Os02t0495900-01
Chr02	irgsp1_rep	CDS	17418734	17418946	.	+	0	Parent=Os02t0495900-01
Chr02	irgsp1_rep	three_prime_UTR	17418947	17419157	.	+	.	Parent=Os02t0495900-01
Chr02	irgsp1_rep	mRNA	17428031	17431216	.	+	.	ID=Os02t0496100-01;Name=Os02t0496100-01;Locus_id=Os02g0496100;CGSNL Gene Symbol=HSFA5;CGSNL Gene Name=HEAT STRESS TRANSCRIPTION FACTOR A5;Oryzabase Gene Symbol Synonym(s)=HSfA5%2C OsHsfA5%2C OsHsf-06%2C HSF06%2C OsHSF6%2C HSF6;Oryzabase Gene Name Synonym(s)=Heat stress transcription factor A5%2C Heat stress transcription factor A-5%2C Heat stress transcription factor 6;Note=Heat shock factor (HSF)-type%2C DNA-binding domain containing protein.;Transcript_evidence=AK065643 (DDBJ%2C Best hit),AK072210 (DDBJ%2C Best hit);ORF_evidence=Q6K6S5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Heat shock factor (HSF)-type%2C DNA-binding (IPR000232),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=J013035J03,J013165J23;Oryzabase=8556;Expression=AK065643;TENOR=Os02t0496100-01;KEGG=Os02t0496100-01
Chr02	irgsp1_rep	five_prime_UTR	17428031	17428123	.	+	.	Parent=Os02t0496100-01
Chr02	irgsp1_rep	CDS	17428124	17428366	.	+	0	Parent=Os02t0496100-01
Chr02	irgsp1_rep	CDS	17429842	17431026	.	+	0	Parent=Os02t0496100-01
Chr02	irgsp1_rep	three_prime_UTR	17431027	17431216	.	+	.	Parent=Os02t0496100-01
Chr02	irgsp1_rep	mRNA	17440506	17441790	.	+	.	ID=Os02t0496300-01;Name=Os02t0496300-01;Locus_id=Os02g0496300;Note=Conserved hypothetical protein.;Transcript_evidence=AK069861 (DDBJ%2C Best hit);ORF_evidence=NP_001043762.1 (RefSeq);NIAS_FLcDNA=J023038A06;TENOR=Os02t0496300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	17440506	17440905	.	+	.	Parent=Os02t0496300-01
Chr02	irgsp1_rep	five_prime_UTR	17440987	17441117	.	+	.	Parent=Os02t0496300-01
Chr02	irgsp1_rep	CDS	17441118	17441516	.	+	0	Parent=Os02t0496300-01
Chr02	irgsp1_rep	three_prime_UTR	17441517	17441790	.	+	.	Parent=Os02t0496300-01
Chr02	irgsp1_rep	mRNA	17440510	17445827	.	+	.	ID=Os02t0496300-02;Name=Os02t0496300-02;Locus_id=Os02g0496300;Note=Conserved hypothetical protein.;Transcript_evidence=AK105361 (DDBJ%2C Best hit);ORF_evidence=NP_001043762.1 (RefSeq);NIAS_FLcDNA=001-119-D05;TENOR=Os02t0496300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	17440510	17440905	.	+	.	Parent=Os02t0496300-02
Chr02	irgsp1_rep	five_prime_UTR	17440987	17441117	.	+	.	Parent=Os02t0496300-02
Chr02	irgsp1_rep	CDS	17441118	17441469	.	+	0	Parent=Os02t0496300-02
Chr02	irgsp1_rep	CDS	17445001	17445065	.	+	2	Parent=Os02t0496300-02
Chr02	irgsp1_rep	CDS	17445165	17445170	.	+	0	Parent=Os02t0496300-02
Chr02	irgsp1_rep	three_prime_UTR	17445171	17445237	.	+	.	Parent=Os02t0496300-02
Chr02	irgsp1_rep	three_prime_UTR	17445464	17445827	.	+	.	Parent=Os02t0496300-02
Chr02	irgsp1_rep	mRNA	17446354	17455063	.	+	.	ID=Os02t0496500-01;Name=Os02t0496500-01;Locus_id=Os02g0496500;Oryzabase Gene Symbol Synonym(s)=DML3a;Oryzabase Gene Name Synonym(s)=DEMETER-LIKE 3a;Note=HhH-GPD domain domain containing protein.;Transcript_evidence=AK071406 (DDBJ%2C Best hit);ORF_evidence=Q7XZV0 (UniProt);GO=Biological Process: DNA repair (GO:0006281),Biological Process: base-excision repair (GO:0006284),Molecular Function: catalytic activity (GO:0003824),Molecular Function: endonuclease activity (GO:0004519),Molecular Function: 4 iron%2C 4 sulfur cluster binding (GO:0051539);InterPro=HhH-GPD domain (IPR003265),Endonuclease III-like%2C iron-sulphur cluster loop motif (IPR003651),DNA glycosylase (IPR011257),Helix-turn-helix%2C base-excision DNA repair%2C C-terminal (IPR023170);NIAS_FLcDNA=J023092H13;Oryzabase=18230;Expression=AK071406;TENOR=Os02t0496500-01;KEGG=Os02t0496500-01
Chr02	irgsp1_rep	five_prime_UTR	17446354	17446480	.	+	.	Parent=Os02t0496500-01
Chr02	irgsp1_rep	CDS	17446481	17446517	.	+	0	Parent=Os02t0496500-01
Chr02	irgsp1_rep	CDS	17446740	17448236	.	+	2	Parent=Os02t0496500-01
Chr02	irgsp1_rep	CDS	17449077	17449167	.	+	2	Parent=Os02t0496500-01
Chr02	irgsp1_rep	CDS	17449272	17449839	.	+	1	Parent=Os02t0496500-01
Chr02	irgsp1_rep	CDS	17450809	17450888	.	+	0	Parent=Os02t0496500-01
Chr02	irgsp1_rep	CDS	17451211	17451295	.	+	1	Parent=Os02t0496500-01
Chr02	irgsp1_rep	CDS	17451390	17451481	.	+	0	Parent=Os02t0496500-01
Chr02	irgsp1_rep	CDS	17451573	17451641	.	+	1	Parent=Os02t0496500-01
Chr02	irgsp1_rep	CDS	17451721	17451757	.	+	1	Parent=Os02t0496500-01
Chr02	irgsp1_rep	CDS	17451859	17451941	.	+	0	Parent=Os02t0496500-01
Chr02	irgsp1_rep	CDS	17452435	17452890	.	+	1	Parent=Os02t0496500-01
Chr02	irgsp1_rep	CDS	17452979	17453015	.	+	1	Parent=Os02t0496500-01
Chr02	irgsp1_rep	CDS	17453101	17453190	.	+	0	Parent=Os02t0496500-01
Chr02	irgsp1_rep	CDS	17453738	17453803	.	+	0	Parent=Os02t0496500-01
Chr02	irgsp1_rep	CDS	17453922	17454036	.	+	0	Parent=Os02t0496500-01
Chr02	irgsp1_rep	CDS	17454120	17454158	.	+	2	Parent=Os02t0496500-01
Chr02	irgsp1_rep	CDS	17454737	17454918	.	+	2	Parent=Os02t0496500-01
Chr02	irgsp1_rep	three_prime_UTR	17454919	17455063	.	+	.	Parent=Os02t0496500-01
Chr02	irgsp1_rep	mRNA	17455795	17456202	.	-	.	ID=Os02t0496700-00;Name=Os02t0496700-00;Locus_id=Os02g0496700;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6K6Q5 (UniProt);TENOR=Os02t0496700-00
Chr02	irgsp1_rep	CDS	17455795	17456202	.	-	0	Parent=Os02t0496700-00
Chr02	irgsp1_rep	mRNA	17464027	17464615	.	+	.	ID=Os02t0496900-01;Name=Os02t0496900-01;Locus_id=Os02g0496900;Note=Mitochondrial import receptor%2C TOM9-2 subunit%2C plant domain containing protein.;Transcript_evidence=AK059542 (DDBJ%2C Best hit);ORF_evidence=B6U2X6 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Cellular Component: mitochondrial outer membrane (GO:0005741);InterPro=Mitochondrial outer membrane translocase complex%2C subunit Tom22 (IPR005683),Mitochondrial outer membrane translocase complex%2C subunit Tom22%2C plant (IPR017411);NIAS_FLcDNA=001-029-E12;Expression=AK059542;TENOR=Os02t0496900-01;KEGG=Os02t0496900-01
Chr02	irgsp1_rep	five_prime_UTR	17464027	17464070	.	+	.	Parent=Os02t0496900-01
Chr02	irgsp1_rep	CDS	17464071	17464352	.	+	0	Parent=Os02t0496900-01
Chr02	irgsp1_rep	three_prime_UTR	17464353	17464615	.	+	.	Parent=Os02t0496900-01
Chr02	irgsp1_rep	mRNA	17487632	17488714	.	+	.	ID=Os02t0497400-00;Name=Os02t0497400-00;Locus_id=Os02g0497400;Note=Hypothetical conserved gene.;Transcript_evidence=CT835480 (DDBJ%2C Best hit);ORF_evidence=GeneMark;TENOR=Os02t0497400-00;KEGG=Os02t0497400-00
Chr02	irgsp1_rep	five_prime_UTR	17487632	17487949	.	+	.	Parent=Os02t0497400-00
Chr02	irgsp1_rep	five_prime_UTR	17487972	17488045	.	+	.	Parent=Os02t0497400-00
Chr02	irgsp1_rep	CDS	17488046	17488507	.	+	0	Parent=Os02t0497400-00
Chr02	irgsp1_rep	three_prime_UTR	17488508	17488714	.	+	.	Parent=Os02t0497400-00
Chr02	irgsp1_rep	mRNA	17494296	17505476	.	-	.	ID=Os02t0497500-01;Name=Os02t0497500-01;Locus_id=Os02g0497500;CGSNL Gene Symbol=RAD50;Oryzabase Gene Symbol Synonym(s)=Rad50;Note=Similar to DNA repair protein Rad50.;Transcript_evidence=AK106285 (DDBJ%2C Best hit);ORF_evidence=A8IE24 (UniProt);NIAS_FLcDNA=002-101-A09;Oryzabase=11614;Expression=AK106285;TENOR=Os02t0497500-01;KEGG=Os02t0497500-01 (EC:3.6.-.-)
Chr02	irgsp1_rep	CDS	17505355	17505476	.	-	0	Parent=Os02t0497500-01
Chr02	irgsp1_rep	CDS	17505059	17505173	.	-	1	Parent=Os02t0497500-01
Chr02	irgsp1_rep	CDS	17503959	17504187	.	-	0	Parent=Os02t0497500-01
Chr02	irgsp1_rep	CDS	17503692	17503870	.	-	2	Parent=Os02t0497500-01
Chr02	irgsp1_rep	CDS	17503403	17503573	.	-	0	Parent=Os02t0497500-01
Chr02	irgsp1_rep	CDS	17502942	17503046	.	-	0	Parent=Os02t0497500-01
Chr02	irgsp1_rep	CDS	17502738	17502845	.	-	0	Parent=Os02t0497500-01
Chr02	irgsp1_rep	CDS	17502236	17502475	.	-	0	Parent=Os02t0497500-01
Chr02	irgsp1_rep	three_prime_UTR	17502050	17502235	.	-	.	Parent=Os02t0497500-01
Chr02	irgsp1_rep	three_prime_UTR	17501448	17501575	.	-	.	Parent=Os02t0497500-01
Chr02	irgsp1_rep	three_prime_UTR	17497794	17497908	.	-	.	Parent=Os02t0497500-01
Chr02	irgsp1_rep	three_prime_UTR	17497578	17497707	.	-	.	Parent=Os02t0497500-01
Chr02	irgsp1_rep	three_prime_UTR	17497295	17497478	.	-	.	Parent=Os02t0497500-01
Chr02	irgsp1_rep	three_prime_UTR	17496283	17496491	.	-	.	Parent=Os02t0497500-01
Chr02	irgsp1_rep	three_prime_UTR	17495470	17495671	.	-	.	Parent=Os02t0497500-01
Chr02	irgsp1_rep	three_prime_UTR	17494458	17494627	.	-	.	Parent=Os02t0497500-01
Chr02	irgsp1_rep	three_prime_UTR	17494296	17494381	.	-	.	Parent=Os02t0497500-01
Chr02	irgsp1_rep	mRNA	17489975	17501576	.	-	.	ID=Os02t0497500-02;Name=Os02t0497500-02;Locus_id=Os02g0497500;CGSNL Gene Symbol=RAD50;Oryzabase Gene Symbol Synonym(s)=Rad50;Note=Similar to DNA repair protein Rad50.;Transcript_evidence=AK106581 (DDBJ%2C Best hit);ORF_evidence=A8IE27 (UniProt);GO=Biological Process: DNA repair (GO:0006281),Molecular Function: nuclease activity (GO:0004518),Molecular Function: ATP binding (GO:0005524),Molecular Function: zinc ion binding (GO:0008270);InterPro=Rad50 zinc hook (IPR007517),Zinc hook%2C Rad50 (IPR013134);NIAS_FLcDNA=002-111-D11;Oryzabase=11614;Expression=AK106581;TENOR=Os02t0497500-02;KEGG=Os02t0497500-02 (EC:3.6.-.-)
Chr02	irgsp1_rep	five_prime_UTR	17501575	17501576	.	-	.	Parent=Os02t0497500-02
Chr02	irgsp1_rep	CDS	17501448	17501574	.	-	0	Parent=Os02t0497500-02
Chr02	irgsp1_rep	CDS	17497794	17497908	.	-	2	Parent=Os02t0497500-02
Chr02	irgsp1_rep	CDS	17497578	17497707	.	-	1	Parent=Os02t0497500-02
Chr02	irgsp1_rep	CDS	17497269	17497478	.	-	0	Parent=Os02t0497500-02
Chr02	irgsp1_rep	CDS	17496283	17496491	.	-	0	Parent=Os02t0497500-02
Chr02	irgsp1_rep	CDS	17495470	17495671	.	-	1	Parent=Os02t0497500-02
Chr02	irgsp1_rep	CDS	17494458	17494627	.	-	0	Parent=Os02t0497500-02
Chr02	irgsp1_rep	CDS	17494057	17494381	.	-	1	Parent=Os02t0497500-02
Chr02	irgsp1_rep	CDS	17493722	17493847	.	-	0	Parent=Os02t0497500-02
Chr02	irgsp1_rep	CDS	17493590	17493642	.	-	0	Parent=Os02t0497500-02
Chr02	irgsp1_rep	CDS	17491138	17491288	.	-	1	Parent=Os02t0497500-02
Chr02	irgsp1_rep	CDS	17490997	17491059	.	-	0	Parent=Os02t0497500-02
Chr02	irgsp1_rep	CDS	17490697	17490830	.	-	0	Parent=Os02t0497500-02
Chr02	irgsp1_rep	CDS	17490472	17490600	.	-	1	Parent=Os02t0497500-02
Chr02	irgsp1_rep	CDS	17490327	17490366	.	-	1	Parent=Os02t0497500-02
Chr02	irgsp1_rep	three_prime_UTR	17489975	17490326	.	-	.	Parent=Os02t0497500-02
Chr02	irgsp1_rep	mRNA	17499236	17500898	.	-	.	ID=Os02t0497600-01;Name=Os02t0497600-01;Locus_id=Os02g0497600;Note=Conserved hypothetical protein.;Transcript_evidence=AK106982 (DDBJ%2C Best hit);ORF_evidence=B9F043 (UniProt);NIAS_FLcDNA=002-119-H09;TENOR=Os02t0497600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	17500622	17500898	.	-	.	Parent=Os02t0497600-01
Chr02	irgsp1_rep	CDS	17499842	17500621	.	-	0	Parent=Os02t0497600-01
Chr02	irgsp1_rep	three_prime_UTR	17499236	17499841	.	-	.	Parent=Os02t0497600-01
Chr02	irgsp1_rep	mRNA	17510359	17515694	.	-	.	ID=Os02t0497700-01;Name=Os02t0497700-01;Locus_id=Os02g0497700;Note=Similar to Ras-GTPase-activating protein SH3-domain binding protein-like.;Transcript_evidence=AK070143 (DDBJ%2C Best hit);ORF_evidence=B6ST52 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: intracellular (GO:0005622),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nuclear transport factor 2 (IPR002075),Nucleotide-binding%2C alpha-beta plait (IPR012677),Nuclear transport factor 2%2C Eukaryote (IPR018222);NIAS_FLcDNA=J023041O14;Expression=AK070143;TENOR=Os02t0497700-01;KEGG=Os02t0497700-01
Chr02	irgsp1_rep	five_prime_UTR	17515563	17515694	.	-	.	Parent=Os02t0497700-01
Chr02	irgsp1_rep	CDS	17515521	17515562	.	-	0	Parent=Os02t0497700-01
Chr02	irgsp1_rep	CDS	17515261	17515404	.	-	0	Parent=Os02t0497700-01
Chr02	irgsp1_rep	CDS	17514798	17515131	.	-	0	Parent=Os02t0497700-01
Chr02	irgsp1_rep	CDS	17514480	17514712	.	-	2	Parent=Os02t0497700-01
Chr02	irgsp1_rep	CDS	17513463	17513646	.	-	0	Parent=Os02t0497700-01
Chr02	irgsp1_rep	CDS	17513255	17513376	.	-	2	Parent=Os02t0497700-01
Chr02	irgsp1_rep	CDS	17513094	17513159	.	-	0	Parent=Os02t0497700-01
Chr02	irgsp1_rep	CDS	17511522	17511588	.	-	0	Parent=Os02t0497700-01
Chr02	irgsp1_rep	CDS	17510823	17511073	.	-	2	Parent=Os02t0497700-01
Chr02	irgsp1_rep	three_prime_UTR	17510359	17510822	.	-	.	Parent=Os02t0497700-01
Chr02	irgsp1_rep	mRNA	17510315	17513380	.	-	.	ID=Os02t0497700-02;Name=Os02t0497700-02;Locus_id=Os02g0497700;Note=Similar to Ras-GTPase-activating protein SH3-domain binding protein-like.;Transcript_evidence=AK104815 (DDBJ%2C Best hit);ORF_evidence=B6ST52 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-040-H07;Expression=AK104815;TENOR=Os02t0497700-02;KEGG=Os02t0497700-02
Chr02	irgsp1_rep	CDS	17513255	17513380	.	-	0	Parent=Os02t0497700-02
Chr02	irgsp1_rep	CDS	17513094	17513159	.	-	0	Parent=Os02t0497700-02
Chr02	irgsp1_rep	CDS	17511522	17511588	.	-	0	Parent=Os02t0497700-02
Chr02	irgsp1_rep	CDS	17510823	17511073	.	-	2	Parent=Os02t0497700-02
Chr02	irgsp1_rep	three_prime_UTR	17510315	17510822	.	-	.	Parent=Os02t0497700-02
Chr02	irgsp1_rep	mRNA	17520424	17520926	.	-	.	ID=Os02t0498100-01;Name=Os02t0498100-01;Locus_id=Os02g0498100;Note=Hypothetical protein.;Transcript_evidence=AK112058 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-111-G08;Expression=AK112058;TENOR=Os02t0498100-01;KEGG=Os02t0498100-01
Chr02	irgsp1_rep	five_prime_UTR	17520898	17520926	.	-	.	Parent=Os02t0498100-01
Chr02	irgsp1_rep	CDS	17520646	17520897	.	-	0	Parent=Os02t0498100-01
Chr02	irgsp1_rep	three_prime_UTR	17520424	17520645	.	-	.	Parent=Os02t0498100-01
Chr02	irgsp1_rep	mRNA	17527550	17539443	.	+	.	ID=Os02t0498300-01;Name=Os02t0498300-01;Locus_id=Os02g0498300;Note=Similar to non-imprinted in Prader-Willi/Angelman syndrome region protein 1.;Transcript_evidence=AK070515 (DDBJ%2C Best hit);ORF_evidence=NP_001150020.1 (RefSeq);InterPro=Protein of unknown function DUF803 (IPR008521);NIAS_FLcDNA=J023055G08;TENOR=Os02t0498300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	17527550	17527551	.	+	.	Parent=Os02t0498300-01
Chr02	irgsp1_rep	CDS	17527552	17527730	.	+	0	Parent=Os02t0498300-01
Chr02	irgsp1_rep	CDS	17534919	17535067	.	+	1	Parent=Os02t0498300-01
Chr02	irgsp1_rep	CDS	17535239	17535295	.	+	2	Parent=Os02t0498300-01
Chr02	irgsp1_rep	CDS	17536196	17536286	.	+	2	Parent=Os02t0498300-01
Chr02	irgsp1_rep	CDS	17536367	17536527	.	+	1	Parent=Os02t0498300-01
Chr02	irgsp1_rep	CDS	17536982	17537109	.	+	2	Parent=Os02t0498300-01
Chr02	irgsp1_rep	CDS	17537201	17537338	.	+	0	Parent=Os02t0498300-01
Chr02	irgsp1_rep	CDS	17537951	17538043	.	+	0	Parent=Os02t0498300-01
Chr02	irgsp1_rep	CDS	17539054	17539239	.	+	0	Parent=Os02t0498300-01
Chr02	irgsp1_rep	three_prime_UTR	17539240	17539443	.	+	.	Parent=Os02t0498300-01
Chr02	irgsp1_rep	mRNA	17548116	17548581	.	-	.	ID=Os02t0498600-01;Name=Os02t0498600-01;Locus_id=Os02g0498600;Note=Non-protein coding transcript.;Transcript_evidence=AK120105 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013023G15;TENOR=Os02t0498600-01
Chr02	irgsp1_rep	exon	17548116	17548581	.	-	.	Parent=Os02t0498600-01
Chr02	irgsp1_rep	mRNA	17548460	17558112	.	+	.	ID=Os02t0498633-00;Name=Os02t0498633-00;Locus_id=Os02g0498633;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os02t0498633-00
Chr02	irgsp1_rep	CDS	17548460	17548597	.	+	0	Parent=Os02t0498633-00
Chr02	irgsp1_rep	CDS	17558014	17558112	.	+	0	Parent=Os02t0498633-00
Chr02	irgsp1_rep	mRNA	17550631	17554943	.	-	.	ID=Os02t0498666-01;Name=Os02t0498666-01;Locus_id=Os02g0498666;Note=Non-protein coding transcript.;Transcript_evidence=AK242937 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090087C03;TENOR=Os02t0498666-01
Chr02	irgsp1_rep	exon	17554836	17554943	.	-	.	Parent=Os02t0498666-01
Chr02	irgsp1_rep	exon	17554496	17554754	.	-	.	Parent=Os02t0498666-01
Chr02	irgsp1_rep	exon	17554307	17554418	.	-	.	Parent=Os02t0498666-01
Chr02	irgsp1_rep	exon	17550631	17552440	.	-	.	Parent=Os02t0498666-01
Chr02	irgsp1_rep	mRNA	17559220	17562804	.	-	.	ID=Os02t0498700-01;Name=Os02t0498700-01;Locus_id=Os02g0498700;CGSNL Gene Symbol=GAUT13;CGSNL Gene Name=GALACTURONOSYLTRANSFERASE 13;Oryzabase Gene Symbol Synonym(s)=OsGAUT13;Oryzabase Gene Name Synonym(s)=galacturonosyltransferase 13;Note=Similar to QUA1 (QUASIMODO 1)%3B polygalacturonate 4-alpha-galacturonosyltransferase/ transferase%2C transferring glycosyl groups / transferase%2C transferring hexosyl groups.;Transcript_evidence=AK069572 (DDBJ%2C Best hit);ORF_evidence=NP_189150.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 8 (IPR002495);NIAS_FLcDNA=J023023H24;Oryzabase=23254;TENOR=Os02t0498700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	17562715	17562804	.	-	.	Parent=Os02t0498700-01
Chr02	irgsp1_rep	CDS	17561917	17562714	.	-	0	Parent=Os02t0498700-01
Chr02	irgsp1_rep	CDS	17560246	17560770	.	-	0	Parent=Os02t0498700-01
Chr02	irgsp1_rep	CDS	17559574	17559852	.	-	0	Parent=Os02t0498700-01
Chr02	irgsp1_rep	three_prime_UTR	17559220	17559573	.	-	.	Parent=Os02t0498700-01
Chr02	irgsp1_rep	mRNA	17559222	17562781	.	-	.	ID=Os02t0498700-02;Name=Os02t0498700-02;Locus_id=Os02g0498700;CGSNL Gene Symbol=GAUT13;CGSNL Gene Name=GALACTURONOSYLTRANSFERASE 13;Oryzabase Gene Symbol Synonym(s)=OsGAUT13;Oryzabase Gene Name Synonym(s)=galacturonosyltransferase 13;Note=Similar to QUA1 (QUASIMODO 1)%3B polygalacturonate 4-alpha-galacturonosyltransferase/ transferase%2C transferring glycosyl groups / transferase%2C transferring hexosyl groups.;Transcript_evidence=AK102664 (DDBJ%2C Best hit);ORF_evidence=NP_189150.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 8 (IPR002495);NIAS_FLcDNA=J033101K22;Oryzabase=23254;TENOR=Os02t0498700-02
Chr02	irgsp1_rep	five_prime_UTR	17562715	17562781	.	-	.	Parent=Os02t0498700-02
Chr02	irgsp1_rep	CDS	17561917	17562714	.	-	0	Parent=Os02t0498700-02
Chr02	irgsp1_rep	CDS	17560246	17560770	.	-	0	Parent=Os02t0498700-02
Chr02	irgsp1_rep	CDS	17559574	17559852	.	-	0	Parent=Os02t0498700-02
Chr02	irgsp1_rep	three_prime_UTR	17559222	17559573	.	-	.	Parent=Os02t0498700-02
Chr02	irgsp1_rep	mRNA	17575129	17582223	.	+	.	ID=Os02t0499000-01;Name=Os02t0499000-01;Locus_id=Os02g0499000;CGSNL Gene Symbol=ERF140;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 140;Oryzabase Gene Symbol Synonym(s)=OsERF#140%2C OsERF140%2C AP2/EREBP#013%2C AP2/EREBP13;Oryzabase Gene Name Synonym(s)=ethylene response factor 140%2C APETALA2/ethylene-responsive element binding protein 13;Note=Similar to DNA binding protein.;Transcript_evidence=AK067156 (DDBJ%2C Best hit);ORF_evidence=NP_001151501.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J013098A10;Oryzabase=10633;TENOR=Os02t0499000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	17575129	17576811	.	+	.	Parent=Os02t0499000-01
Chr02	irgsp1_rep	five_prime_UTR	17576976	17576992	.	+	.	Parent=Os02t0499000-01
Chr02	irgsp1_rep	CDS	17576993	17577035	.	+	0	Parent=Os02t0499000-01
Chr02	irgsp1_rep	CDS	17578875	17578981	.	+	2	Parent=Os02t0499000-01
Chr02	irgsp1_rep	CDS	17580121	17580199	.	+	0	Parent=Os02t0499000-01
Chr02	irgsp1_rep	CDS	17580792	17580972	.	+	2	Parent=Os02t0499000-01
Chr02	irgsp1_rep	CDS	17581508	17581629	.	+	1	Parent=Os02t0499000-01
Chr02	irgsp1_rep	CDS	17581759	17581895	.	+	2	Parent=Os02t0499000-01
Chr02	irgsp1_rep	three_prime_UTR	17581896	17582223	.	+	.	Parent=Os02t0499000-01
Chr02	irgsp1_rep	mRNA	17606097	17607381	.	+	.	ID=Os02t0499300-01;Name=Os02t0499300-01;Locus_id=Os02g0499300;Note=Hypothetical protein.;Transcript_evidence=AK106994 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-120-B07;TENOR=Os02t0499300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	17606097	17606103	.	+	.	Parent=Os02t0499300-01
Chr02	irgsp1_rep	CDS	17606104	17606517	.	+	0	Parent=Os02t0499300-01
Chr02	irgsp1_rep	three_prime_UTR	17606518	17607381	.	+	.	Parent=Os02t0499300-01
Chr02	irgsp1_rep	mRNA	17620944	17622263	.	+	.	ID=Os02t0499575-00;Name=Os02t0499575-00;Locus_id=Os02g0499575;Note=Hypothetical protein.;Transcript_evidence=EU941497 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0499575-00
Chr02	irgsp1_rep	five_prime_UTR	17620944	17621127	.	+	.	Parent=Os02t0499575-00
Chr02	irgsp1_rep	CDS	17621128	17621424	.	+	0	Parent=Os02t0499575-00
Chr02	irgsp1_rep	three_prime_UTR	17621425	17622263	.	+	.	Parent=Os02t0499575-00
Chr02	irgsp1_rep	mRNA	17641115	17645569	.	+	.	ID=Os02t0500250-01;Name=Os02t0500250-01;Locus_id=Os02g0500250;Note=Conserved hypothetical protein.;Transcript_evidence=AK288312 (DDBJ%2C Best hit);ORF_evidence=Q6K3M1 (UniProt);NIAS_FLcDNA=J090020K22;TENOR=Os02t0500250-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	17641115	17643795	.	+	.	Parent=Os02t0500250-01
Chr02	irgsp1_rep	CDS	17643796	17644002	.	+	0	Parent=Os02t0500250-01
Chr02	irgsp1_rep	three_prime_UTR	17644003	17645569	.	+	.	Parent=Os02t0500250-01
Chr02	irgsp1_rep	mRNA	17676359	17677352	.	-	.	ID=Os02t0500700-00;Name=Os02t0500700-00;Locus_id=Os02g0500700;Note=Similar to CytoChrome P450 family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10P24 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os02t0500700-00
Chr02	irgsp1_rep	CDS	17677170	17677352	.	-	0	Parent=Os02t0500700-00
Chr02	irgsp1_rep	CDS	17676359	17676973	.	-	0	Parent=Os02t0500700-00
Chr02	irgsp1_rep	mRNA	17718578	17720440	.	-	.	ID=Os02t0501350-01;Name=Os02t0501350-01;Locus_id=Os02g0501350;Note=Conserved hypothetical protein.;Transcript_evidence=AK242912 (DDBJ%2C Best hit);ORF_evidence=NP_001174782.1 (RefSeq);NIAS_FLcDNA=J090083F07;TENOR=Os02t0501350-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	17720299	17720440	.	-	.	Parent=Os02t0501350-01
Chr02	irgsp1_rep	five_prime_UTR	17719505	17719520	.	-	.	Parent=Os02t0501350-01
Chr02	irgsp1_rep	CDS	17719472	17719504	.	-	0	Parent=Os02t0501350-01
Chr02	irgsp1_rep	CDS	17718689	17718835	.	-	0	Parent=Os02t0501350-01
Chr02	irgsp1_rep	three_prime_UTR	17718578	17718688	.	-	.	Parent=Os02t0501350-01
Chr02	irgsp1_rep	mRNA	17677625	17678224	.	-	.	ID=Os02t0502300-00;Name=Os02t0502300-00;Locus_id=Os02g0502300;Note=Similar to CytoChrome P450 family protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10P40 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);TENOR=Os02t0502300-00
Chr02	irgsp1_rep	CDS	17677625	17678224	.	-	0	Parent=Os02t0502300-00
Chr02	irgsp1_rep	mRNA	17781040	17785512	.	+	.	ID=Os02t0502500-01;Name=Os02t0502500-01;Locus_id=Os02g0502500;Note=Protein kinase-like domain containing protein.;Transcript_evidence=AK100315 (DDBJ%2C Best hit);ORF_evidence=A2X544 (UniProt);GO=Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J023078O21;Expression=AK100315;TENOR=Os02t0502500-01;KEGG=Os02t0502500-01
Chr02	irgsp1_rep	five_prime_UTR	17781040	17781369	.	+	.	Parent=Os02t0502500-01
Chr02	irgsp1_rep	CDS	17781370	17781385	.	+	0	Parent=Os02t0502500-01
Chr02	irgsp1_rep	CDS	17782833	17784940	.	+	2	Parent=Os02t0502500-01
Chr02	irgsp1_rep	three_prime_UTR	17784941	17785512	.	+	.	Parent=Os02t0502500-01
Chr02	irgsp1_rep	mRNA	17781094	17785512	.	+	.	ID=Os02t0502500-02;Name=Os02t0502500-02;Locus_id=Os02g0502500;Note=Protein kinase-like domain containing protein.;Transcript_evidence=AK100111 (DDBJ%2C Best hit);ORF_evidence=A2X544 (UniProt);GO=Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J023005P11;Expression=AK100111;TENOR=Os02t0502500-02;KEGG=Os02t0502500-02
Chr02	irgsp1_rep	five_prime_UTR	17781094	17781369	.	+	.	Parent=Os02t0502500-02
Chr02	irgsp1_rep	CDS	17781370	17781385	.	+	0	Parent=Os02t0502500-02
Chr02	irgsp1_rep	CDS	17782833	17784940	.	+	2	Parent=Os02t0502500-02
Chr02	irgsp1_rep	three_prime_UTR	17784941	17785512	.	+	.	Parent=Os02t0502500-02
Chr02	irgsp1_rep	mRNA	17805404	17808857	.	+	.	ID=Os02t0503100-00;Name=Os02t0503100-00;Locus_id=Os02g0503100;Oryzabase Gene Name Synonym(s)=cytoChrome P450 71A1;Note=Similar to flavonoid 3-monooxygenase.;Transcript_evidence=AK365993 (DDBJ);ORF_evidence=NP_001151318.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);Oryzabase=23279;TENOR=Os02t0503100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	17805404	17806188	.	+	0	Parent=Os02t0503100-00
Chr02	irgsp1_rep	CDS	17806431	17806716	.	+	1	Parent=Os02t0503100-00
Chr02	irgsp1_rep	CDS	17808192	17808857	.	+	0	Parent=Os02t0503100-00
Chr02	irgsp1_rep	mRNA	17816790	17819130	.	+	.	ID=Os02t0503350-01;Name=Os02t0503350-01;Locus_id=Os02g0503350;Note=Hypothetical conserved gene.;Transcript_evidence=AK242880 (DDBJ%2C Best hit);ORF_evidence=NP_001172976.1 (RefSeq);NIAS_FLcDNA=J090078L18;TENOR=Os02t0503350-01;KEGG=Os02t0503350-01
Chr02	irgsp1_rep	five_prime_UTR	17816790	17818696	.	+	.	Parent=Os02t0503350-01
Chr02	irgsp1_rep	CDS	17818697	17818921	.	+	0	Parent=Os02t0503350-01
Chr02	irgsp1_rep	three_prime_UTR	17818922	17819130	.	+	.	Parent=Os02t0503350-01
Chr02	irgsp1_rep	mRNA	17846294	17847820	.	+	.	ID=Os02t0503400-01;Name=Os02t0503400-01;Locus_id=Os02g0503400;CGSNL Gene Symbol=RPL35;CGSNL Gene Name=RIBOSOMAL PROTEIN L35;Oryzabase Gene Symbol Synonym(s)=OsRPL35;Oryzabase Gene Name Synonym(s)=ribosomal protein L35%2C r-protein L35;Note=Similar to 60S ribosomal protein L35.;Transcript_evidence=AK059262 (DDBJ%2C Best hit),AK119701 (DDBJ%2C Best hit),AK119704 (DDBJ%2C Best hit);ORF_evidence=NP_001148517.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L29 (IPR001854);NIAS_FLcDNA=001-025-A09,002-157-D08,002-157-E02;Oryzabase=15728;TENOR=Os02t0503400-01
Chr02	irgsp1_rep	five_prime_UTR	17846294	17846349	.	+	.	Parent=Os02t0503400-01
Chr02	irgsp1_rep	CDS	17846350	17846353	.	+	0	Parent=Os02t0503400-01
Chr02	irgsp1_rep	CDS	17846424	17846559	.	+	2	Parent=Os02t0503400-01
Chr02	irgsp1_rep	CDS	17846645	17846801	.	+	1	Parent=Os02t0503400-01
Chr02	irgsp1_rep	CDS	17847601	17847675	.	+	0	Parent=Os02t0503400-01
Chr02	irgsp1_rep	three_prime_UTR	17847676	17847820	.	+	.	Parent=Os02t0503400-01
Chr02	irgsp1_rep	mRNA	17848182	17852559	.	-	.	ID=Os02t0503500-01;Name=Os02t0503500-01;Locus_id=Os02g0503500;Note=Similar to 3-oxoacyl-[acyl-carrier-protein] reductase%2C chloroplast precursor (EC 1.1.1.100) (3-ketoacyl-acyl carrier protein reductase).;Transcript_evidence=AK243389 (DDBJ%2C Best hit);ORF_evidence=B6T8T5 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity (GO:0004316),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: NAD binding (GO:0051287);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),3-oxoacyl-(acyl-carrier-protein) reductase (IPR011284),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);NIAS_FLcDNA=J100063K09;TENOR=Os02t0503500-01;KEGG=Os02t0503500-01 (EC:1.1.1.-%2C EC:1.1.1.100)
Chr02	irgsp1_rep	five_prime_UTR	17852548	17852559	.	-	.	Parent=Os02t0503500-01
Chr02	irgsp1_rep	CDS	17852409	17852547	.	-	0	Parent=Os02t0503500-01
Chr02	irgsp1_rep	CDS	17850578	17850723	.	-	2	Parent=Os02t0503500-01
Chr02	irgsp1_rep	CDS	17850091	17850144	.	-	0	Parent=Os02t0503500-01
Chr02	irgsp1_rep	CDS	17849734	17849814	.	-	0	Parent=Os02t0503500-01
Chr02	irgsp1_rep	CDS	17849611	17849656	.	-	0	Parent=Os02t0503500-01
Chr02	irgsp1_rep	CDS	17849424	17849518	.	-	2	Parent=Os02t0503500-01
Chr02	irgsp1_rep	CDS	17849316	17849348	.	-	0	Parent=Os02t0503500-01
Chr02	irgsp1_rep	CDS	17849065	17849199	.	-	0	Parent=Os02t0503500-01
Chr02	irgsp1_rep	CDS	17848885	17848978	.	-	0	Parent=Os02t0503500-01
Chr02	irgsp1_rep	CDS	17848634	17848716	.	-	2	Parent=Os02t0503500-01
Chr02	irgsp1_rep	CDS	17848341	17848373	.	-	0	Parent=Os02t0503500-01
Chr02	irgsp1_rep	three_prime_UTR	17848182	17848340	.	-	.	Parent=Os02t0503500-01
Chr02	irgsp1_rep	mRNA	17862192	17866853	.	+	.	ID=Os02t0503700-00;Name=Os02t0503700-00;Locus_id=Os02g0503700;Note=Similar to CytoChrome P450 CYP81L6.;Transcript_evidence=BT054415 (DDBJ);ORF_evidence=B6SV20 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os02t0503700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	17862192	17862193	.	+	.	Parent=Os02t0503700-00
Chr02	irgsp1_rep	CDS	17862194	17862813	.	+	0	Parent=Os02t0503700-00
Chr02	irgsp1_rep	CDS	17862887	17863287	.	+	1	Parent=Os02t0503700-00
Chr02	irgsp1_rep	CDS	17866079	17866508	.	+	2	Parent=Os02t0503700-00
Chr02	irgsp1_rep	CDS	17866601	17866853	.	+	1	Parent=Os02t0503700-00
Chr02	irgsp1_rep	mRNA	17867904	17868530	.	+	.	ID=Os02t0503800-00;Name=Os02t0503800-00;Locus_id=Os02g0503800;Note=CytoChrome P450 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2X552 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);TENOR=Os02t0503800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	17867904	17868530	.	+	0	Parent=Os02t0503800-00
Chr02	irgsp1_rep	mRNA	17870684	17871190	.	+	.	ID=Os02t0503850-00;Name=Os02t0503850-00;Locus_id=Os02g0503850;Note=Similar to CytoChrome P450 CYP81L6.;Transcript_evidence=ab initio prediction;ORF_evidence=B6SV20 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);TENOR=Os02t0503850-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	17870684	17871190	.	+	0	Parent=Os02t0503850-00
Chr02	irgsp1_rep	mRNA	17873662	17875911	.	+	.	ID=Os02t0503900-01;Name=Os02t0503900-01;Locus_id=Os02g0503900;Note=CytoChrome P450 family protein.;Transcript_evidence=AK100163 (DDBJ%2C Best hit);ORF_evidence=B6SV20 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J023021D15;Expression=AK100163;TENOR=Os02t0503900-01;KEGG=Os02t0503900-01
Chr02	irgsp1_rep	five_prime_UTR	17873662	17873725	.	+	.	Parent=Os02t0503900-01
Chr02	irgsp1_rep	CDS	17873726	17874348	.	+	0	Parent=Os02t0503900-01
Chr02	irgsp1_rep	CDS	17874424	17874754	.	+	1	Parent=Os02t0503900-01
Chr02	irgsp1_rep	CDS	17874841	17875202	.	+	0	Parent=Os02t0503900-01
Chr02	irgsp1_rep	CDS	17875531	17875789	.	+	1	Parent=Os02t0503900-01
Chr02	irgsp1_rep	three_prime_UTR	17875790	17875911	.	+	.	Parent=Os02t0503900-01
Chr02	irgsp1_rep	mRNA	17880882	17886285	.	+	.	ID=Os02t0504000-01;Name=Os02t0504000-01;Locus_id=Os02g0504000;Note=Similar to CytoChrome P450 CYP81L6.;Transcript_evidence=AK120677 (DDBJ%2C Best hit);ORF_evidence=B6SV20 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);NIAS_FLcDNA=J013162E22;TENOR=Os02t0504000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	17880882	17880907	.	+	.	Parent=Os02t0504000-01
Chr02	irgsp1_rep	CDS	17880908	17881377	.	+	0	Parent=Os02t0504000-01
Chr02	irgsp1_rep	CDS	17882235	17882322	.	+	1	Parent=Os02t0504000-01
Chr02	irgsp1_rep	three_prime_UTR	17882323	17882386	.	+	.	Parent=Os02t0504000-01
Chr02	irgsp1_rep	three_prime_UTR	17882692	17883615	.	+	.	Parent=Os02t0504000-01
Chr02	irgsp1_rep	three_prime_UTR	17885942	17886285	.	+	.	Parent=Os02t0504000-01
Chr02	irgsp1_rep	mRNA	17886532	17889823	.	-	.	ID=Os02t0504050-01;Name=Os02t0504050-01;Locus_id=Os02g0504050;Note=Hypothetical conserved gene.;Transcript_evidence=AK240725 (DDBJ%2C Best hit);ORF_evidence=B8AIB9 (UniProt);NIAS_FLcDNA=J043027N03;TENOR=Os02t0504050-01;KEGG=Os02t0504050-01
Chr02	irgsp1_rep	five_prime_UTR	17889686	17889823	.	-	.	Parent=Os02t0504050-01
Chr02	irgsp1_rep	five_prime_UTR	17889292	17889583	.	-	.	Parent=Os02t0504050-01
Chr02	irgsp1_rep	five_prime_UTR	17889082	17889215	.	-	.	Parent=Os02t0504050-01
Chr02	irgsp1_rep	five_prime_UTR	17888927	17888939	.	-	.	Parent=Os02t0504050-01
Chr02	irgsp1_rep	CDS	17888877	17888926	.	-	0	Parent=Os02t0504050-01
Chr02	irgsp1_rep	CDS	17888620	17888713	.	-	1	Parent=Os02t0504050-01
Chr02	irgsp1_rep	three_prime_UTR	17886532	17888619	.	-	.	Parent=Os02t0504050-01
Chr02	irgsp1_rep	mRNA	17905138	17909140	.	+	.	ID=Os02t0504100-01;Name=Os02t0504100-01;Locus_id=Os02g0504100;Note=Conserved hypothetical protein.;Transcript_evidence=AK068973 (DDBJ%2C Best hit);ORF_evidence=A3A766 (UniProt);NIAS_FLcDNA=J023001O14;TENOR=Os02t0504100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	17905138	17905191	.	+	.	Parent=Os02t0504100-01
Chr02	irgsp1_rep	CDS	17905192	17905694	.	+	0	Parent=Os02t0504100-01
Chr02	irgsp1_rep	CDS	17905811	17906003	.	+	1	Parent=Os02t0504100-01
Chr02	irgsp1_rep	CDS	17906091	17906255	.	+	0	Parent=Os02t0504100-01
Chr02	irgsp1_rep	three_prime_UTR	17906256	17909140	.	+	.	Parent=Os02t0504100-01
Chr02	irgsp1_rep	mRNA	17910631	17914502	.	+	.	ID=Os02t0504200-00;Name=Os02t0504200-00;Locus_id=Os02g0504200;Note=NBS-LRR protein (Fragment).;Transcript_evidence=AK360252 (DDBJ);ORF_evidence=Q6K655 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os02t0504200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	17910631	17914500	.	+	0	Parent=Os02t0504200-00
Chr02	irgsp1_rep	three_prime_UTR	17914501	17914502	.	+	.	Parent=Os02t0504200-00
Chr02	irgsp1_rep	mRNA	17930757	17936165	.	+	.	ID=Os02t0504500-01;Name=Os02t0504500-01;Locus_id=Os02g0504500;Note=PUG domain containing protein.;Transcript_evidence=AK102956 (DDBJ%2C Best hit);ORF_evidence=XP_002892246.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal (IPR000449),PUG domain (IPR006567),Zinc finger%2C C2H2 (IPR007087),UBA-like (IPR009060),Zinc finger%2C C2H2-like (IPR015880),Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (IPR015940),PUB domain (IPR018997);NIAS_FLcDNA=J033115G09;Expression=AK102956;TENOR=Os02t0504500-01;KEGG=Os02t0504500-01
Chr02	irgsp1_rep	five_prime_UTR	17930757	17930872	.	+	.	Parent=Os02t0504500-01
Chr02	irgsp1_rep	CDS	17930873	17931040	.	+	0	Parent=Os02t0504500-01
Chr02	irgsp1_rep	CDS	17931180	17931330	.	+	0	Parent=Os02t0504500-01
Chr02	irgsp1_rep	CDS	17931431	17931526	.	+	2	Parent=Os02t0504500-01
Chr02	irgsp1_rep	CDS	17932244	17932320	.	+	2	Parent=Os02t0504500-01
Chr02	irgsp1_rep	CDS	17932844	17932923	.	+	0	Parent=Os02t0504500-01
Chr02	irgsp1_rep	CDS	17933433	17933493	.	+	1	Parent=Os02t0504500-01
Chr02	irgsp1_rep	CDS	17934370	17934437	.	+	0	Parent=Os02t0504500-01
Chr02	irgsp1_rep	CDS	17934529	17934610	.	+	1	Parent=Os02t0504500-01
Chr02	irgsp1_rep	CDS	17934769	17934855	.	+	0	Parent=Os02t0504500-01
Chr02	irgsp1_rep	CDS	17935226	17935303	.	+	0	Parent=Os02t0504500-01
Chr02	irgsp1_rep	CDS	17935553	17935672	.	+	0	Parent=Os02t0504500-01
Chr02	irgsp1_rep	CDS	17935771	17935947	.	+	0	Parent=Os02t0504500-01
Chr02	irgsp1_rep	three_prime_UTR	17935948	17936165	.	+	.	Parent=Os02t0504500-01
Chr02	irgsp1_rep	mRNA	17932861	17936151	.	+	.	ID=Os02t0504500-02;Name=Os02t0504500-02;Locus_id=Os02g0504500;Note=Similar to predicted protein.;Transcript_evidence=AK062243 (DDBJ%2C Best hit);ORF_evidence=NP_563718.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=PUG domain (IPR006567),PUB domain (IPR018997);NIAS_FLcDNA=001-047-E12;Expression=AK062243;TENOR=Os02t0504500-02;KEGG=Os02t0504500-02
Chr02	irgsp1_rep	five_prime_UTR	17932861	17932861	.	+	.	Parent=Os02t0504500-02
Chr02	irgsp1_rep	CDS	17932862	17932923	.	+	0	Parent=Os02t0504500-02
Chr02	irgsp1_rep	CDS	17933433	17933493	.	+	1	Parent=Os02t0504500-02
Chr02	irgsp1_rep	CDS	17934370	17934437	.	+	0	Parent=Os02t0504500-02
Chr02	irgsp1_rep	CDS	17934529	17934610	.	+	1	Parent=Os02t0504500-02
Chr02	irgsp1_rep	CDS	17934769	17934855	.	+	0	Parent=Os02t0504500-02
Chr02	irgsp1_rep	CDS	17935226	17935303	.	+	0	Parent=Os02t0504500-02
Chr02	irgsp1_rep	CDS	17935553	17935672	.	+	0	Parent=Os02t0504500-02
Chr02	irgsp1_rep	CDS	17935771	17935947	.	+	0	Parent=Os02t0504500-02
Chr02	irgsp1_rep	three_prime_UTR	17935948	17936151	.	+	.	Parent=Os02t0504500-02
Chr02	irgsp1_rep	mRNA	17949851	17950707	.	+	.	ID=Os02t0504700-00;Name=Os02t0504700-00;Locus_id=Os02g0504700;Note=Conserved hypothetical protein.;Transcript_evidence=EU960939 (DDBJ);ORF_evidence=NP_001172978.1 (RefSeq);TENOR=Os02t0504700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	17949851	17950403	.	+	0	Parent=Os02t0504700-00
Chr02	irgsp1_rep	CDS	17950537	17950538	.	+	2	Parent=Os02t0504700-00
Chr02	irgsp1_rep	three_prime_UTR	17950539	17950707	.	+	.	Parent=Os02t0504700-00
Chr02	irgsp1_rep	mRNA	17952030	17957355	.	-	.	ID=Os02t0504800-01;Name=Os02t0504800-01;Locus_id=Os02g0504800;Note=Similar to Delta-9 stearoyl-acyl carrier protein desaturase (EC 1.14.99.6) (Fragment).;Transcript_evidence=AK069683 (DDBJ%2C Best hit);ORF_evidence=B8AIC3 (UniProt);GO=Biological Process: fatty acid metabolic process (GO:0006631),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: acyl-[acyl-carrier-protein] desaturase activity (GO:0045300),Molecular Function: transition metal ion binding (GO:0046914);InterPro=Fatty acid desaturase%2C type 2 (IPR005067),Ferritin/ribonucleotide reductase-like (IPR009078),Ribonucleotide reductase-related (IPR012348);NIAS_FLcDNA=J023030N09;Expression=AK069683;TENOR=Os02t0504800-01;KEGG=Os02t0504800-01 (EC:1.14.19.2%2C EC:1.14.99.6)
Chr02	irgsp1_rep	five_prime_UTR	17957284	17957355	.	-	.	Parent=Os02t0504800-01
Chr02	irgsp1_rep	CDS	17957174	17957283	.	-	0	Parent=Os02t0504800-01
Chr02	irgsp1_rep	CDS	17954681	17955206	.	-	1	Parent=Os02t0504800-01
Chr02	irgsp1_rep	CDS	17952656	17952801	.	-	0	Parent=Os02t0504800-01
Chr02	irgsp1_rep	CDS	17952229	17952415	.	-	1	Parent=Os02t0504800-01
Chr02	irgsp1_rep	three_prime_UTR	17952030	17952228	.	-	.	Parent=Os02t0504800-01
Chr02	irgsp1_rep	mRNA	17952229	17955118	.	+	.	ID=Os02t0504850-00;Name=Os02t0504850-00;Locus_id=Os02g0504850;Note=Hypothetical protein.;Transcript_evidence=tplb0059g06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0504850-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	17952229	17952249	.	+	.	Parent=Os02t0504850-00
Chr02	irgsp1_rep	CDS	17952250	17952783	.	+	0	Parent=Os02t0504850-00
Chr02	irgsp1_rep	CDS	17954666	17955118	.	+	0	Parent=Os02t0504850-00
Chr02	irgsp1_rep	mRNA	17958515	17961703	.	-	.	ID=Os02t0504900-01;Name=Os02t0504900-01;Locus_id=Os02g0504900;Oryzabase Gene Symbol Synonym(s)=OsFbox091%2C OsFbox91%2C Os_F0517;Oryzabase Gene Name Synonym(s)=F-box protein 91;Note=Kelch-type beta propeller domain containing protein.;Transcript_evidence=AK065386 (DDBJ%2C Best hit);ORF_evidence=XP_002311715.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Kelch repeat type 1 (IPR006652),Galactose oxidase%2C beta-propeller (IPR015916);NIAS_FLcDNA=J013024N06;Oryzabase=16885;Expression=AK065386;TENOR=Os02t0504900-01;KEGG=Os02t0504900-01
Chr02	irgsp1_rep	five_prime_UTR	17961556	17961703	.	-	.	Parent=Os02t0504900-01
Chr02	irgsp1_rep	five_prime_UTR	17960737	17960803	.	-	.	Parent=Os02t0504900-01
Chr02	irgsp1_rep	five_prime_UTR	17960304	17960642	.	-	.	Parent=Os02t0504900-01
Chr02	irgsp1_rep	CDS	17959774	17960303	.	-	0	Parent=Os02t0504900-01
Chr02	irgsp1_rep	CDS	17958914	17959541	.	-	1	Parent=Os02t0504900-01
Chr02	irgsp1_rep	three_prime_UTR	17958515	17958913	.	-	.	Parent=Os02t0504900-01
Chr02	irgsp1_rep	mRNA	17958536	17960276	.	-	.	ID=Os02t0504900-02;Name=Os02t0504900-02;Locus_id=Os02g0504900;Oryzabase Gene Symbol Synonym(s)=OsFbox091%2C OsFbox91%2C Os_F0517;Oryzabase Gene Name Synonym(s)=F-box protein 91;Note=Similar to f-box family protein.;Transcript_evidence=AK073150 (DDBJ%2C Best hit);ORF_evidence=XP_002311715.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Kelch repeat type 1 (IPR006652),Galactose oxidase%2C beta-propeller (IPR015916);NIAS_FLcDNA=J033001H05;Oryzabase=16885;Expression=AK073150;TENOR=Os02t0504900-02;KEGG=Os02t0504900-02
Chr02	irgsp1_rep	five_prime_UTR	17960241	17960276	.	-	.	Parent=Os02t0504900-02
Chr02	irgsp1_rep	CDS	17959774	17960240	.	-	0	Parent=Os02t0504900-02
Chr02	irgsp1_rep	CDS	17958914	17959541	.	-	1	Parent=Os02t0504900-02
Chr02	irgsp1_rep	three_prime_UTR	17958536	17958913	.	-	.	Parent=Os02t0504900-02
Chr02	irgsp1_rep	mRNA	17958910	17960644	.	+	.	ID=Os02t0505066-00;Name=Os02t0505066-00;Locus_id=Os02g0505066;Note=Hypothetical protein.;Transcript_evidence=tplb0024b14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0505066-00
Chr02	irgsp1_rep	five_prime_UTR	17958910	17959539	.	+	.	Parent=Os02t0505066-00
Chr02	irgsp1_rep	five_prime_UTR	17959772	17959908	.	+	.	Parent=Os02t0505066-00
Chr02	irgsp1_rep	CDS	17959909	17960268	.	+	0	Parent=Os02t0505066-00
Chr02	irgsp1_rep	three_prime_UTR	17960269	17960644	.	+	.	Parent=Os02t0505066-00
Chr02	irgsp1_rep	mRNA	17975315	17980870	.	+	.	ID=Os02t0505400-02;Name=Os02t0505400-02;Locus_id=Os02g0505400;RAP-DB Gene Symbol Synonym(s)=EXO70F2%2C OsEXO70F2%2C OsExo70F2%2C OrysaF2_Exo70%2C OsExo70-F2%2C Exo70-F2;RAP-DB Gene Name Synonym(s)=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN F2%2C exocyst subunit EXO70 family protein F2;CGSNL Gene Symbol=EXO70F2;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN F2;Oryzabase Gene Symbol Synonym(s)=OsEXO70F2%2C OsExo70F2%2C OrysaF2_Exo70%2C OsExo70-F2%2C Exo70-F2;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein F2;Note=Component of Exo70 exocyst complex;Transcript_evidence=AK120466,AK102812;ORF_evidence=Q6K647;GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exocyst complex protein Exo70 (IPR004140),Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=J013108M03, J033108L10;Manual Curation=September 1%2C 2015;Literature_PMID=26186703;Oryzabase=20332;Expression=AK120466;TENOR=Os02t0505400-02;KEGG=Os02t0505400-02
Chr02	irgsp1_rep	five_prime_UTR	17975315	17975387	.	+	.	Parent=Os02t0505400-02
Chr02	irgsp1_rep	CDS	17975388	17977457	.	+	0	Parent=Os02t0505400-02
Chr02	irgsp1_rep	three_prime_UTR	17977458	17980870	.	+	.	Parent=Os02t0505400-02
Chr02	irgsp1_rep	mRNA	17981509	17982535	.	-	.	ID=Os02t0505500-01;Name=Os02t0505500-01;Locus_id=Os02g0505500;Note=Conserved hypothetical protein.;Transcript_evidence=AK073398 (DDBJ%2C Best hit);ORF_evidence=A2X565 (UniProt);NIAS_FLcDNA=J033045F02;Expression=AK073398;TENOR=Os02t0505500-01;KEGG=Os02t0505500-01
Chr02	irgsp1_rep	five_prime_UTR	17982358	17982535	.	-	.	Parent=Os02t0505500-01
Chr02	irgsp1_rep	CDS	17981704	17982357	.	-	0	Parent=Os02t0505500-01
Chr02	irgsp1_rep	three_prime_UTR	17981509	17981703	.	-	.	Parent=Os02t0505500-01
Chr02	irgsp1_rep	mRNA	17990539	17991624	.	-	.	ID=Os02t0505700-01;Name=Os02t0505700-01;Locus_id=Os02g0505700;Note=Hypothetical protein.;Transcript_evidence=AK069364 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023015P03;Expression=AK069364;TENOR=Os02t0505700-01;KEGG=Os02t0505700-01
Chr02	irgsp1_rep	five_prime_UTR	17991107	17991624	.	-	.	Parent=Os02t0505700-01
Chr02	irgsp1_rep	CDS	17990843	17991106	.	-	0	Parent=Os02t0505700-01
Chr02	irgsp1_rep	three_prime_UTR	17990539	17990842	.	-	.	Parent=Os02t0505700-01
Chr02	irgsp1_rep	mRNA	18005066	18006376	.	+	.	ID=Os02t0506100-00;Name=Os02t0506100-00;Locus_id=Os02g0506100;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0038i20 (Wheat FLcDNA);ORF_evidence=Q6K6L0 (UniProt);TENOR=Os02t0506100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	18005066	18006376	.	+	0	Parent=Os02t0506100-00
Chr02	irgsp1_rep	mRNA	18025721	18027242	.	-	.	ID=Os02t0506400-00;Name=Os02t0506400-00;Locus_id=Os02g0506400;Note=Similar to Ubiquitin-specific protease 15.;Transcript_evidence=BT086085 (DDBJ);ORF_evidence=NP_001149759.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C MYND-type (IPR002893),Sel1-like (IPR006597),Tetratricopeptide-like helical (IPR011990);TENOR=Os02t0506400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	18027160	18027242	.	-	.	Parent=Os02t0506400-00
Chr02	irgsp1_rep	CDS	18026930	18027159	.	-	0	Parent=Os02t0506400-00
Chr02	irgsp1_rep	CDS	18026598	18026760	.	-	1	Parent=Os02t0506400-00
Chr02	irgsp1_rep	CDS	18025721	18026467	.	-	0	Parent=Os02t0506400-00
Chr02	irgsp1_rep	mRNA	18039127	18049165	.	+	.	ID=Os02t0506500-01;Name=Os02t0506500-01;Locus_id=Os02g0506500;Note=Similar to ubiquitin-activating enzyme E1 domain-containing protein 1.;Transcript_evidence=AK063549 (DDBJ%2C Best hit);ORF_evidence=NP_001148743.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: cofactor binding (GO:0048037);InterPro=UBA/THIF-type NAD/FAD binding fold (IPR000594),D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding (IPR006140),Molybdenum cofactor biosynthesis%2C MoeB (IPR009036),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-117-D08;Expression=AK063549;TENOR=Os02t0506500-01;KEGG=Os02t0506500-01
Chr02	irgsp1_rep	five_prime_UTR	18039127	18039243	.	+	.	Parent=Os02t0506500-01
Chr02	irgsp1_rep	CDS	18039244	18039324	.	+	0	Parent=Os02t0506500-01
Chr02	irgsp1_rep	CDS	18039424	18039483	.	+	0	Parent=Os02t0506500-01
Chr02	irgsp1_rep	CDS	18039613	18039726	.	+	0	Parent=Os02t0506500-01
Chr02	irgsp1_rep	CDS	18045589	18045717	.	+	0	Parent=Os02t0506500-01
Chr02	irgsp1_rep	CDS	18045812	18045880	.	+	0	Parent=Os02t0506500-01
Chr02	irgsp1_rep	CDS	18046237	18046383	.	+	0	Parent=Os02t0506500-01
Chr02	irgsp1_rep	CDS	18046544	18046580	.	+	0	Parent=Os02t0506500-01
Chr02	irgsp1_rep	CDS	18047197	18047279	.	+	2	Parent=Os02t0506500-01
Chr02	irgsp1_rep	CDS	18047510	18047584	.	+	0	Parent=Os02t0506500-01
Chr02	irgsp1_rep	CDS	18048073	18048147	.	+	0	Parent=Os02t0506500-01
Chr02	irgsp1_rep	CDS	18048442	18048528	.	+	0	Parent=Os02t0506500-01
Chr02	irgsp1_rep	CDS	18048620	18048735	.	+	0	Parent=Os02t0506500-01
Chr02	irgsp1_rep	CDS	18048882	18048999	.	+	1	Parent=Os02t0506500-01
Chr02	irgsp1_rep	three_prime_UTR	18049000	18049165	.	+	.	Parent=Os02t0506500-01
Chr02	irgsp1_rep	mRNA	18039127	18040245	.	+	.	ID=Os02t0506500-02;Name=Os02t0506500-02;Locus_id=Os02g0506500;Note=Similar to predicted protein.;Transcript_evidence=AK109318 (DDBJ%2C Best hit);ORF_evidence=NP_001148743.1 (RefSeq);NIAS_FLcDNA=002-188-G10;Expression=AK109318;TENOR=Os02t0506500-02;KEGG=Os02t0506500-02
Chr02	irgsp1_rep	five_prime_UTR	18039127	18039243	.	+	.	Parent=Os02t0506500-02
Chr02	irgsp1_rep	CDS	18039244	18039324	.	+	0	Parent=Os02t0506500-02
Chr02	irgsp1_rep	CDS	18039424	18039483	.	+	0	Parent=Os02t0506500-02
Chr02	irgsp1_rep	CDS	18039613	18039777	.	+	0	Parent=Os02t0506500-02
Chr02	irgsp1_rep	three_prime_UTR	18039778	18040245	.	+	.	Parent=Os02t0506500-02
Chr02	irgsp1_rep	mRNA	18039129	18049707	.	+	.	ID=Os02t0506500-03;Name=Os02t0506500-03;Locus_id=Os02g0506500;Note=Similar to ubiquitin-activating enzyme E1 domain-containing protein 1.;Transcript_evidence=AK062572 (DDBJ%2C Best hit);ORF_evidence=NP_001148743.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: cofactor binding (GO:0048037);InterPro=UBA/THIF-type NAD/FAD binding fold (IPR000594),D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding (IPR006140),Molybdenum cofactor biosynthesis%2C MoeB (IPR009036),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-046-D11;Expression=AK062572;TENOR=Os02t0506500-03;KEGG=Os02t0506500-03
Chr02	irgsp1_rep	five_prime_UTR	18039129	18039243	.	+	.	Parent=Os02t0506500-03
Chr02	irgsp1_rep	CDS	18039244	18039324	.	+	0	Parent=Os02t0506500-03
Chr02	irgsp1_rep	CDS	18039613	18039726	.	+	0	Parent=Os02t0506500-03
Chr02	irgsp1_rep	CDS	18045589	18045717	.	+	0	Parent=Os02t0506500-03
Chr02	irgsp1_rep	CDS	18045812	18045880	.	+	0	Parent=Os02t0506500-03
Chr02	irgsp1_rep	CDS	18046237	18046383	.	+	0	Parent=Os02t0506500-03
Chr02	irgsp1_rep	CDS	18046544	18046580	.	+	0	Parent=Os02t0506500-03
Chr02	irgsp1_rep	CDS	18047197	18047279	.	+	2	Parent=Os02t0506500-03
Chr02	irgsp1_rep	CDS	18047510	18047584	.	+	0	Parent=Os02t0506500-03
Chr02	irgsp1_rep	CDS	18048073	18048147	.	+	0	Parent=Os02t0506500-03
Chr02	irgsp1_rep	CDS	18048442	18048528	.	+	0	Parent=Os02t0506500-03
Chr02	irgsp1_rep	CDS	18048620	18048735	.	+	0	Parent=Os02t0506500-03
Chr02	irgsp1_rep	CDS	18049185	18049237	.	+	1	Parent=Os02t0506500-03
Chr02	irgsp1_rep	CDS	18049331	18049470	.	+	2	Parent=Os02t0506500-03
Chr02	irgsp1_rep	three_prime_UTR	18049471	18049707	.	+	.	Parent=Os02t0506500-03
Chr02	irgsp1_rep	mRNA	18039134	18049853	.	+	.	ID=Os02t0506500-04;Name=Os02t0506500-04;Locus_id=Os02g0506500;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK101016 (DDBJ%2C Best hit);ORF_evidence=NP_001148743.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: cofactor binding (GO:0048037);InterPro=UBA/THIF-type NAD/FAD binding fold (IPR000594),D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding (IPR006140),Molybdenum cofactor biosynthesis%2C MoeB (IPR009036),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023149E02;Expression=AK101016;TENOR=Os02t0506500-04;KEGG=Os02t0506500-04
Chr02	irgsp1_rep	five_prime_UTR	18039134	18039243	.	+	.	Parent=Os02t0506500-04
Chr02	irgsp1_rep	CDS	18039244	18039324	.	+	0	Parent=Os02t0506500-04
Chr02	irgsp1_rep	CDS	18039424	18039483	.	+	0	Parent=Os02t0506500-04
Chr02	irgsp1_rep	CDS	18039613	18039726	.	+	0	Parent=Os02t0506500-04
Chr02	irgsp1_rep	CDS	18045589	18045717	.	+	0	Parent=Os02t0506500-04
Chr02	irgsp1_rep	CDS	18045812	18045880	.	+	0	Parent=Os02t0506500-04
Chr02	irgsp1_rep	CDS	18046237	18046383	.	+	0	Parent=Os02t0506500-04
Chr02	irgsp1_rep	CDS	18046544	18046580	.	+	0	Parent=Os02t0506500-04
Chr02	irgsp1_rep	CDS	18047197	18047279	.	+	2	Parent=Os02t0506500-04
Chr02	irgsp1_rep	CDS	18047510	18047584	.	+	0	Parent=Os02t0506500-04
Chr02	irgsp1_rep	CDS	18048073	18048147	.	+	0	Parent=Os02t0506500-04
Chr02	irgsp1_rep	CDS	18048442	18048528	.	+	0	Parent=Os02t0506500-04
Chr02	irgsp1_rep	CDS	18048620	18048735	.	+	0	Parent=Os02t0506500-04
Chr02	irgsp1_rep	CDS	18049185	18049237	.	+	1	Parent=Os02t0506500-04
Chr02	irgsp1_rep	CDS	18049331	18049470	.	+	2	Parent=Os02t0506500-04
Chr02	irgsp1_rep	three_prime_UTR	18049471	18049853	.	+	.	Parent=Os02t0506500-04
Chr02	irgsp1_rep	mRNA	18059135	18059700	.	+	.	ID=Os02t0506600-01;Name=Os02t0506600-01;Locus_id=Os02g0506600;Note=Heat shock protein DnaJ%2C cysteine-rich domain domain containing protein.;Transcript_evidence=AK107967 (DDBJ%2C Best hit);ORF_evidence=B8AID4 (UniProt);GO=Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C cysteine-rich domain (IPR001305);NIAS_FLcDNA=002-135-D03;Expression=AK107967;TENOR=Os02t0506600-01;KEGG=Os02t0506600-01
Chr02	irgsp1_rep	five_prime_UTR	18059135	18059191	.	+	.	Parent=Os02t0506600-01
Chr02	irgsp1_rep	CDS	18059192	18059554	.	+	0	Parent=Os02t0506600-01
Chr02	irgsp1_rep	three_prime_UTR	18059555	18059700	.	+	.	Parent=Os02t0506600-01
Chr02	irgsp1_rep	mRNA	18091841	18092830	.	+	.	ID=Os02t0507100-01;Name=Os02t0507100-01;Locus_id=Os02g0507100;Note=Conserved hypothetical protein.;Transcript_evidence=AK107706 (DDBJ%2C Best hit);ORF_evidence=B9F063 (UniProt);NIAS_FLcDNA=002-132-D04;Expression=AK107706;TENOR=Os02t0507100-01;KEGG=Os02t0507100-01
Chr02	irgsp1_rep	five_prime_UTR	18091841	18091873	.	+	.	Parent=Os02t0507100-01
Chr02	irgsp1_rep	CDS	18091874	18091897	.	+	0	Parent=Os02t0507100-01
Chr02	irgsp1_rep	CDS	18092034	18092286	.	+	0	Parent=Os02t0507100-01
Chr02	irgsp1_rep	CDS	18092474	18092556	.	+	2	Parent=Os02t0507100-01
Chr02	irgsp1_rep	three_prime_UTR	18092557	18092830	.	+	.	Parent=Os02t0507100-01
Chr02	irgsp1_rep	mRNA	18110446	18113725	.	+	.	ID=Os02t0507400-01;Name=Os02t0507400-01;Locus_id=Os02g0507400;Note=Protein of unknown function DUF493 family protein.;Transcript_evidence=AK070166 (DDBJ%2C Best hit);ORF_evidence=Q01L01 (UniProt);InterPro=Uncharacterised protein family UPF0250 (IPR007454);NIAS_FLcDNA=J023043G03;Expression=AK070166;TENOR=Os02t0507400-01;KEGG=Os02t0507400-01
Chr02	irgsp1_rep	five_prime_UTR	18110446	18110546	.	+	.	Parent=Os02t0507400-01
Chr02	irgsp1_rep	CDS	18110547	18110748	.	+	0	Parent=Os02t0507400-01
Chr02	irgsp1_rep	CDS	18111370	18111473	.	+	2	Parent=Os02t0507400-01
Chr02	irgsp1_rep	CDS	18112149	18112262	.	+	0	Parent=Os02t0507400-01
Chr02	irgsp1_rep	CDS	18112905	18112988	.	+	0	Parent=Os02t0507400-01
Chr02	irgsp1_rep	CDS	18113103	18113159	.	+	0	Parent=Os02t0507400-01
Chr02	irgsp1_rep	three_prime_UTR	18113160	18113725	.	+	.	Parent=Os02t0507400-01
Chr02	irgsp1_rep	mRNA	18110492	18113752	.	+	.	ID=Os02t0507400-02;Name=Os02t0507400-02;Locus_id=Os02g0507400;Note=Protein of unknown function DUF493 family protein.;Transcript_evidence=AK098971 (DDBJ%2C Best hit),AK062534 (DDBJ%2C Best hit);ORF_evidence=Q01L01 (UniProt);InterPro=Uncharacterised protein family UPF0250 (IPR007454);NIAS_FLcDNA=J013078O19,001-104-E11;TENOR=Os02t0507400-02
Chr02	irgsp1_rep	five_prime_UTR	18110492	18110546	.	+	.	Parent=Os02t0507400-02
Chr02	irgsp1_rep	CDS	18110547	18110748	.	+	0	Parent=Os02t0507400-02
Chr02	irgsp1_rep	CDS	18111370	18111473	.	+	2	Parent=Os02t0507400-02
Chr02	irgsp1_rep	CDS	18112149	18112262	.	+	0	Parent=Os02t0507400-02
Chr02	irgsp1_rep	CDS	18112905	18112988	.	+	0	Parent=Os02t0507400-02
Chr02	irgsp1_rep	CDS	18113103	18113159	.	+	0	Parent=Os02t0507400-02
Chr02	irgsp1_rep	three_prime_UTR	18113160	18113752	.	+	.	Parent=Os02t0507400-02
Chr02	irgsp1_rep	mRNA	18110492	18111869	.	+	.	ID=Os02t0507400-03;Name=Os02t0507400-03;Locus_id=Os02g0507400;Note=Similar to OSIGBa0148P16.4 protein.;Transcript_evidence=AK109669 (DDBJ%2C Best hit);ORF_evidence=Q01L01 (UniProt);NIAS_FLcDNA=002-145-A09;TENOR=Os02t0507400-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	18110492	18111251	.	+	.	Parent=Os02t0507400-03
Chr02	irgsp1_rep	CDS	18111252	18111557	.	+	0	Parent=Os02t0507400-03
Chr02	irgsp1_rep	three_prime_UTR	18111558	18111869	.	+	.	Parent=Os02t0507400-03
Chr02	irgsp1_rep	mRNA	18120264	18121518	.	+	.	ID=Os02t0507600-01;Name=Os02t0507600-01;Locus_id=Os02g0507600;Note=Conserved hypothetical protein.;Transcript_evidence=AK241321 (DDBJ%2C Best hit);ORF_evidence=NP_001172979.1 (RefSeq);NIAS_FLcDNA=J065142K02;TENOR=Os02t0507600-01;KEGG=Os02t0507600-01
Chr02	irgsp1_rep	five_prime_UTR	18120264	18120315	.	+	.	Parent=Os02t0507600-01
Chr02	irgsp1_rep	CDS	18120316	18121122	.	+	0	Parent=Os02t0507600-01
Chr02	irgsp1_rep	three_prime_UTR	18121123	18121518	.	+	.	Parent=Os02t0507600-01
Chr02	irgsp1_rep	mRNA	18137316	18138068	.	-	.	ID=Os02t0507900-00;Name=Os02t0507900-00;Locus_id=Os02g0507900;Note=Late embryogenesis abundant protein%2C LEA-14 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001046923.2 (RefSeq);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);TENOR=Os02t0507900-00
Chr02	irgsp1_rep	CDS	18137316	18138068	.	-	0	Parent=Os02t0507900-00
Chr02	irgsp1_rep	mRNA	18139118	18142753	.	-	.	ID=Os02t0508000-01;Name=Os02t0508000-01;Locus_id=Os02g0508000;Note=Trimeric LpxA-like domain containing protein.;Transcript_evidence=AK243610 (DDBJ%2C Best hit);ORF_evidence=NP_001150227.1 (RefSeq);GO=Molecular Function: transferase activity (GO:0016740);InterPro=Bacterial transferase hexapeptide repeat (IPR001451),Trimeric LpxA-like (IPR011004);NIAS_FLcDNA=J100085H03;TENOR=Os02t0508000-01;KEGG=Os02t0508000-01
Chr02	irgsp1_rep	five_prime_UTR	18142663	18142753	.	-	.	Parent=Os02t0508000-01
Chr02	irgsp1_rep	CDS	18142263	18142662	.	-	0	Parent=Os02t0508000-01
Chr02	irgsp1_rep	CDS	18139340	18139716	.	-	2	Parent=Os02t0508000-01
Chr02	irgsp1_rep	three_prime_UTR	18139118	18139339	.	-	.	Parent=Os02t0508000-01
Chr02	irgsp1_rep	mRNA	18145538	18146073	.	-	.	ID=Os02t0508100-01;Name=Os02t0508100-01;Locus_id=Os02g0508100;Note=Similar to OSIGBa0075F02.3 protein.;Transcript_evidence=AK121771 (DDBJ%2C Best hit),AK063931 (DDBJ%2C Best hit);ORF_evidence=Q01LF6 (UniProt);InterPro=Protein of unknown function DUF3339 (IPR021775);NIAS_FLcDNA=J033092F10,001-123-D03;TENOR=Os02t0508100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	18145965	18146073	.	-	.	Parent=Os02t0508100-01
Chr02	irgsp1_rep	CDS	18145755	18145964	.	-	0	Parent=Os02t0508100-01
Chr02	irgsp1_rep	three_prime_UTR	18145538	18145754	.	-	.	Parent=Os02t0508100-01
Chr02	irgsp1_rep	mRNA	18162970	18166866	.	-	.	ID=Os02t0508500-01;Name=Os02t0508500-01;Locus_id=Os02g0508500;Note=Conserved hypothetical protein.;Transcript_evidence=AK066496 (DDBJ%2C Best hit);ORF_evidence=B9F065 (UniProt);NIAS_FLcDNA=J013074B07;TENOR=Os02t0508500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	18166865	18166866	.	-	.	Parent=Os02t0508500-01
Chr02	irgsp1_rep	CDS	18166716	18166864	.	-	0	Parent=Os02t0508500-01
Chr02	irgsp1_rep	CDS	18166362	18166473	.	-	1	Parent=Os02t0508500-01
Chr02	irgsp1_rep	three_prime_UTR	18164732	18166361	.	-	.	Parent=Os02t0508500-01
Chr02	irgsp1_rep	three_prime_UTR	18163562	18164644	.	-	.	Parent=Os02t0508500-01
Chr02	irgsp1_rep	three_prime_UTR	18162970	18163489	.	-	.	Parent=Os02t0508500-01
Chr02	irgsp1_rep	mRNA	18162970	18165518	.	-	.	ID=Os02t0508500-02;Name=Os02t0508500-02;Locus_id=Os02g0508500;Note=Transposase%2C MuDR%2C plant domain containing protein.;Transcript_evidence=AK062558 (DDBJ%2C Best hit);ORF_evidence=B9G617 (UniProt);InterPro=Transposase%2C MuDR%2C plant (IPR004332),MULE transposase domain (IPR018289);NIAS_FLcDNA=001-044-B05;TENOR=Os02t0508500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	18165518	18165518	.	-	.	Parent=Os02t0508500-02
Chr02	irgsp1_rep	CDS	18164732	18165517	.	-	0	Parent=Os02t0508500-02
Chr02	irgsp1_rep	CDS	18164618	18164644	.	-	0	Parent=Os02t0508500-02
Chr02	irgsp1_rep	three_prime_UTR	18163562	18164617	.	-	.	Parent=Os02t0508500-02
Chr02	irgsp1_rep	three_prime_UTR	18162970	18163489	.	-	.	Parent=Os02t0508500-02
Chr02	irgsp1_rep	mRNA	18176399	18176710	.	-	.	ID=Os02t0508650-00;Name=Os02t0508650-00;Locus_id=Os02g0508650;Note=Non-protein coding transcript.;Transcript_evidence=FP094256 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0508650-00
Chr02	irgsp1_rep	exon	18176399	18176710	.	-	.	Parent=Os02t0508650-00
Chr02	irgsp1_rep	mRNA	18181861	18182118	.	+	.	ID=Os02t0508801-00;Name=Os02t0508801-00;Locus_id=Os02g0508801;Note=Similar to predicted protein.;Transcript_evidence=EU959920 (DDBJ);ORF_evidence=Q6K2G2 (UniProt);InterPro=Protein of unknown function DUF3339 (IPR021775);TENOR=Os02t0508801-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	18181861	18182073	.	+	0	Parent=Os02t0508801-00
Chr02	irgsp1_rep	three_prime_UTR	18182074	18182118	.	+	.	Parent=Os02t0508801-00
Chr02	irgsp1_rep	mRNA	18211500	18211991	.	+	.	ID=Os02t0509500-01;Name=Os02t0509500-01;Locus_id=Os02g0509500;Note=Protein of unknown function DUF3339 domain containing protein.;Transcript_evidence=AK105187 (DDBJ%2C Best hit);ORF_evidence=A2X590 (UniProt);InterPro=Protein of unknown function DUF3339 (IPR021775);NIAS_FLcDNA=001-106-F09;Expression=AK105187;TENOR=Os02t0509500-01;KEGG=Os02t0509500-01
Chr02	irgsp1_rep	five_prime_UTR	18211500	18211532	.	+	.	Parent=Os02t0509500-01
Chr02	irgsp1_rep	CDS	18211533	18211742	.	+	0	Parent=Os02t0509500-01
Chr02	irgsp1_rep	three_prime_UTR	18211743	18211991	.	+	.	Parent=Os02t0509500-01
Chr02	irgsp1_rep	mRNA	18219267	18220774	.	+	.	ID=Os02t0509600-01;Name=Os02t0509600-01;Locus_id=Os02g0509600;Note=Conserved hypothetical protein.;Transcript_evidence=AK111075 (DDBJ%2C Best hit);ORF_evidence=B8AIQ2 (UniProt);NIAS_FLcDNA=002-175-E10;Expression=AK111075;TENOR=Os02t0509600-01;KEGG=Os02t0509600-01
Chr02	irgsp1_rep	five_prime_UTR	18219267	18219411	.	+	.	Parent=Os02t0509600-01
Chr02	irgsp1_rep	five_prime_UTR	18219501	18219504	.	+	.	Parent=Os02t0509600-01
Chr02	irgsp1_rep	CDS	18219505	18219744	.	+	0	Parent=Os02t0509600-01
Chr02	irgsp1_rep	CDS	18220153	18220548	.	+	0	Parent=Os02t0509600-01
Chr02	irgsp1_rep	three_prime_UTR	18220549	18220774	.	+	.	Parent=Os02t0509600-01
Chr02	irgsp1_rep	mRNA	18227411	18230629	.	+	.	ID=Os02t0510000-01;Name=Os02t0510000-01;Locus_id=Os02g0510000;Oryzabase Gene Symbol Synonym(s)=OsDjC18;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C18;Note=Similar to Chaperone protein dnaJ.;Transcript_evidence=AK100659 (DDBJ%2C Best hit);ORF_evidence=C6F1K7 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Heat shock protein DnaJ%2C conserved site (IPR018253),Domain of unknown function DUF3444 (IPR024593);NIAS_FLcDNA=J023111L15;Oryzabase=12175;Expression=AK100659;TENOR=Os02t0510000-01;KEGG=Os02t0510000-01
Chr02	irgsp1_rep	five_prime_UTR	18227411	18227540	.	+	.	Parent=Os02t0510000-01
Chr02	irgsp1_rep	five_prime_UTR	18227647	18227838	.	+	.	Parent=Os02t0510000-01
Chr02	irgsp1_rep	CDS	18227839	18230043	.	+	0	Parent=Os02t0510000-01
Chr02	irgsp1_rep	three_prime_UTR	18230044	18230629	.	+	.	Parent=Os02t0510000-01
Chr02	irgsp1_rep	mRNA	18227411	18231479	.	+	.	ID=Os02t0510000-02;Name=Os02t0510000-02;Locus_id=Os02g0510000;Oryzabase Gene Symbol Synonym(s)=OsDjC18;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C18;Note=Similar to Chaperone protein dnaJ.;Transcript_evidence=AK099429 (DDBJ%2C Best hit);ORF_evidence=C6F1K7 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Heat shock protein DnaJ%2C conserved site (IPR018253),Domain of unknown function DUF3444 (IPR024593);NIAS_FLcDNA=J013012C24;Oryzabase=12175;Expression=AK099429;TENOR=Os02t0510000-02;KEGG=Os02t0510000-02
Chr02	irgsp1_rep	five_prime_UTR	18227411	18227540	.	+	.	Parent=Os02t0510000-02
Chr02	irgsp1_rep	five_prime_UTR	18227652	18227838	.	+	.	Parent=Os02t0510000-02
Chr02	irgsp1_rep	CDS	18227839	18230043	.	+	0	Parent=Os02t0510000-02
Chr02	irgsp1_rep	three_prime_UTR	18230044	18230174	.	+	.	Parent=Os02t0510000-02
Chr02	irgsp1_rep	three_prime_UTR	18231126	18231479	.	+	.	Parent=Os02t0510000-02
Chr02	irgsp1_rep	mRNA	18231489	18235780	.	-	.	ID=Os02t0510100-01;Name=Os02t0510100-01;Locus_id=Os02g0510100;CGSNL Gene Symbol=CYP7;CGSNL Gene Name=CYCLOPHILIN 7;Oryzabase Gene Symbol Synonym(s)=OsCYP-7;Oryzabase Gene Name Synonym(s)=cyclophilin 7;Note=Similar to U6 snRNA-associated Sm-like protein LSm6 (Sm protein F).;Transcript_evidence=AK058487 (DDBJ%2C Best hit);ORF_evidence=Q8LCS5 (UniProt);InterPro=Like-Sm ribonucleoprotein (LSM) domain (IPR001163),Like-Sm ribonucleoprotein (LSM) domain%2C eukaryotic/archaea-type (IPR006649),Like-Sm ribonucleoprotein (LSM)-related domain (IPR010920);NIAS_FLcDNA=001-016-D10;Oryzabase=15065;Expression=AK058487;TENOR=Os02t0510100-01;KEGG=Os02t0510100-01
Chr02	irgsp1_rep	five_prime_UTR	18235737	18235780	.	-	.	Parent=Os02t0510100-01
Chr02	irgsp1_rep	CDS	18235592	18235736	.	-	0	Parent=Os02t0510100-01
Chr02	irgsp1_rep	CDS	18231893	18232006	.	-	2	Parent=Os02t0510100-01
Chr02	irgsp1_rep	CDS	18231766	18231812	.	-	2	Parent=Os02t0510100-01
Chr02	irgsp1_rep	three_prime_UTR	18231489	18231765	.	-	.	Parent=Os02t0510100-01
Chr02	irgsp1_rep	mRNA	18231489	18235721	.	-	.	ID=Os02t0510100-02;Name=Os02t0510100-02;Locus_id=Os02g0510100;CGSNL Gene Symbol=CYP7;CGSNL Gene Name=CYCLOPHILIN 7;Oryzabase Gene Symbol Synonym(s)=OsCYP-7;Oryzabase Gene Name Synonym(s)=cyclophilin 7;Note=Similar to U6 snRNA-associated Sm-like protein LSm6 (Sm protein F).;Transcript_evidence=AK122107 (DDBJ%2C Best hit);ORF_evidence=Q8LCS5 (UniProt);InterPro=Like-Sm ribonucleoprotein (LSM) domain (IPR001163),Like-Sm ribonucleoprotein (LSM) domain%2C eukaryotic/archaea-type (IPR006649),Like-Sm ribonucleoprotein (LSM)-related domain (IPR010920);NIAS_FLcDNA=J033126F06;Oryzabase=15065;Expression=AK122107;TENOR=Os02t0510100-02;KEGG=Os02t0510100-02
Chr02	irgsp1_rep	CDS	18235592	18235721	.	-	0	Parent=Os02t0510100-02
Chr02	irgsp1_rep	CDS	18231893	18232006	.	-	2	Parent=Os02t0510100-02
Chr02	irgsp1_rep	CDS	18231766	18231812	.	-	2	Parent=Os02t0510100-02
Chr02	irgsp1_rep	three_prime_UTR	18231762	18231765	.	-	.	Parent=Os02t0510100-02
Chr02	irgsp1_rep	three_prime_UTR	18231489	18231667	.	-	.	Parent=Os02t0510100-02
Chr02	irgsp1_rep	mRNA	18236073	18238350	.	+	.	ID=Os02t0510200-01;Name=Os02t0510200-01;Locus_id=Os02g0510200;RAP-DB Gene Symbol Synonym(s)=ALS%2C OsALS%2C AHAS;RAP-DB Gene Name Synonym(s)=ACETOLACTATE SYNTHASE%2C acetolactate synthase%2C acetohydroxyacid synthase;CGSNL Gene Symbol=ALS;CGSNL Gene Name=ACETOLACTATE SYNTHASE;Oryzabase Gene Symbol Synonym(s)=OsALS%2C AHAS;Oryzabase Gene Name Synonym(s)=acetolactate synthase%2C acetohydroxyacid synthase;Note=Acetolactate synthase (EC4.6.3.8)%2C Acetohydroxy acid synthase%2C Herbicide resistance (mutated form of rice ALS%2C OsmALS (W548L/S627I));Transcript_evidence=AB049822 (Kinmaze%2C herbicide sensitive wild type);ORF_evidence=Q6K2E8;GO=Biological Process: branched-chain amino acid biosynthetic process (GO:0009082),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: acetolactate synthase activity (GO:0003984),Molecular Function: thiamine pyrophosphate binding (GO:0030976),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Acetolactate synthase%2C large subunit%2C biosynthetic (IPR012846),Thiamin diphosphate-binding fold (IPR029061),Thiamine pyrophosphate enzyme%2C N-terminal TPP-binding domain (IPR012001),DHS-like NAD/FAD-binding domain (IPR029035),Thiamine pyrophosphate enzyme%2C central domain (IPR012000),Thiamine pyrophosphate enzyme%2C C-terminal TPP-binding (IPR011766);Manual Curation=March 9%2C 2017;Literature_PMID=22350999,17334827,DOI: 10.1007/s11032-005-0999-y;Oryzabase=6085;TENOR=Os02t0510200-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	18236073	18236119	.	+	.	Parent=Os02t0510200-01
Chr02	irgsp1_rep	CDS	18236120	18238054	.	+	0	Parent=Os02t0510200-01
Chr02	irgsp1_rep	three_prime_UTR	18238055	18238350	.	+	.	Parent=Os02t0510200-01
Chr02	irgsp1_rep	mRNA	18239269	18241839	.	-	.	ID=Os02t0510300-01;Name=Os02t0510300-01;Locus_id=Os02g0510300;Note=Similar to basic salivary proline-rich protein 2.;Transcript_evidence=AK104001 (DDBJ%2C Best hit),AK067961 (DDBJ%2C Best hit);ORF_evidence=NP_001159000.1 (RefSeq);NIAS_FLcDNA=001-019-E05,J013123J20;Expression=AK104001;TENOR=Os02t0510300-01;KEGG=Os02t0510300-01
Chr02	irgsp1_rep	five_prime_UTR	18241729	18241839	.	-	.	Parent=Os02t0510300-01
Chr02	irgsp1_rep	CDS	18241437	18241728	.	-	0	Parent=Os02t0510300-01
Chr02	irgsp1_rep	CDS	18239507	18240177	.	-	2	Parent=Os02t0510300-01
Chr02	irgsp1_rep	three_prime_UTR	18239269	18239506	.	-	.	Parent=Os02t0510300-01
Chr02	irgsp1_rep	mRNA	18242694	18243393	.	+	.	ID=Os02t0510400-01;Name=Os02t0510400-01;Locus_id=Os02g0510400;Note=Conserved hypothetical protein.;Transcript_evidence=AK119978 (DDBJ%2C Best hit);ORF_evidence=NP_001044138.1 (RefSeq);NIAS_FLcDNA=002-184-F04;TENOR=Os02t0510400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	18242694	18243020	.	+	0	Parent=Os02t0510400-01
Chr02	irgsp1_rep	three_prime_UTR	18243021	18243393	.	+	.	Parent=Os02t0510400-01
Chr02	irgsp1_rep	mRNA	18252570	18256034	.	+	.	ID=Os02t0510600-01;Name=Os02t0510600-01;Locus_id=Os02g0510600;CGSNL Gene Symbol=HMP13;CGSNL Gene Name=HEAVY METAL-ASSOCIATED PROTEIN 13;Oryzabase Gene Symbol Synonym(s)=OsHMP13;Oryzabase Gene Name Synonym(s)=Heavy metal-associated protein 13;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK073949 (DDBJ%2C Best hit);ORF_evidence=B8AIQ4 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);NIAS_FLcDNA=J033073M20;Oryzabase=23536;Expression=AK073949;TENOR=Os02t0510600-01;KEGG=Os02t0510600-01
Chr02	irgsp1_rep	five_prime_UTR	18252570	18252724	.	+	.	Parent=Os02t0510600-01
Chr02	irgsp1_rep	CDS	18252725	18252733	.	+	0	Parent=Os02t0510600-01
Chr02	irgsp1_rep	CDS	18252854	18253058	.	+	0	Parent=Os02t0510600-01
Chr02	irgsp1_rep	CDS	18254034	18254245	.	+	2	Parent=Os02t0510600-01
Chr02	irgsp1_rep	CDS	18254407	18254494	.	+	0	Parent=Os02t0510600-01
Chr02	irgsp1_rep	CDS	18255234	18255691	.	+	2	Parent=Os02t0510600-01
Chr02	irgsp1_rep	three_prime_UTR	18255692	18256034	.	+	.	Parent=Os02t0510600-01
Chr02	irgsp1_rep	mRNA	18252672	18255976	.	+	.	ID=Os02t0510600-02;Name=Os02t0510600-02;Locus_id=Os02g0510600;CGSNL Gene Symbol=HMP13;CGSNL Gene Name=HEAVY METAL-ASSOCIATED PROTEIN 13;Oryzabase Gene Symbol Synonym(s)=OsHMP13;Oryzabase Gene Name Synonym(s)=Heavy metal-associated protein 13;Note=Conserved hypothetical protein.;Transcript_evidence=AK120359 (DDBJ%2C Best hit);ORF_evidence=Q6K792 (UniProt);NIAS_FLcDNA=J013067J06;Oryzabase=23536;TENOR=Os02t0510600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	18252672	18252724	.	+	.	Parent=Os02t0510600-02
Chr02	irgsp1_rep	CDS	18252725	18252733	.	+	0	Parent=Os02t0510600-02
Chr02	irgsp1_rep	CDS	18255440	18255691	.	+	0	Parent=Os02t0510600-02
Chr02	irgsp1_rep	three_prime_UTR	18255692	18255976	.	+	.	Parent=Os02t0510600-02
Chr02	irgsp1_rep	mRNA	18277595	18286711	.	+	.	ID=Os02t0511100-00;Name=Os02t0511100-00;Locus_id=Os02g0511100;Note=Similar to Oxidoreductase%2C short chain dehydrogenase/reductase family protein%2C expressed.;Transcript_evidence=FP091322 (DDBJ);ORF_evidence=Q2R3W2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);TENOR=Os02t0511100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	18277595	18277650	.	+	.	Parent=Os02t0511100-00
Chr02	irgsp1_rep	CDS	18277651	18277839	.	+	0	Parent=Os02t0511100-00
Chr02	irgsp1_rep	CDS	18285332	18285524	.	+	0	Parent=Os02t0511100-00
Chr02	irgsp1_rep	CDS	18285648	18285733	.	+	2	Parent=Os02t0511100-00
Chr02	irgsp1_rep	CDS	18285851	18285982	.	+	0	Parent=Os02t0511100-00
Chr02	irgsp1_rep	CDS	18286111	18286275	.	+	0	Parent=Os02t0511100-00
Chr02	irgsp1_rep	CDS	18286385	18286711	.	+	0	Parent=Os02t0511100-00
Chr02	irgsp1_rep	mRNA	18296255	18310133	.	+	.	ID=Os02t0511400-01;Name=Os02t0511400-01;Locus_id=Os02g0511400;Note=Glucose/ribitol dehydrogenase family protein.;Transcript_evidence=AK119471 (DDBJ%2C Best hit);ORF_evidence=NP_001147696.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-134-A10;Expression=AK119471;TENOR=Os02t0511400-01;KEGG=Os02t0511400-01
Chr02	irgsp1_rep	five_prime_UTR	18296255	18296325	.	+	.	Parent=Os02t0511400-01
Chr02	irgsp1_rep	CDS	18296326	18296511	.	+	0	Parent=Os02t0511400-01
Chr02	irgsp1_rep	CDS	18306583	18306775	.	+	0	Parent=Os02t0511400-01
Chr02	irgsp1_rep	CDS	18306905	18306990	.	+	2	Parent=Os02t0511400-01
Chr02	irgsp1_rep	CDS	18307910	18308041	.	+	0	Parent=Os02t0511400-01
Chr02	irgsp1_rep	CDS	18308140	18308304	.	+	0	Parent=Os02t0511400-01
Chr02	irgsp1_rep	CDS	18309657	18310082	.	+	0	Parent=Os02t0511400-01
Chr02	irgsp1_rep	three_prime_UTR	18310083	18310133	.	+	.	Parent=Os02t0511400-01
Chr02	irgsp1_rep	mRNA	18312017	18314355	.	-	.	ID=Os02t0511500-01;Name=Os02t0511500-01;Locus_id=Os02g0511500;Note=Similar to DOT2 (DEFECTIVELY ORGANIZED TRIBUTARIES 2).;Transcript_evidence=AK105023 (DDBJ%2C Best hit);ORF_evidence=NP_197180.1 (RefSeq);InterPro=SART-1 protein (IPR005011);NIAS_FLcDNA=001-010-H05;TENOR=Os02t0511500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	18314355	18314355	.	-	.	Parent=Os02t0511500-01
Chr02	irgsp1_rep	CDS	18314051	18314354	.	-	0	Parent=Os02t0511500-01
Chr02	irgsp1_rep	CDS	18313604	18313962	.	-	2	Parent=Os02t0511500-01
Chr02	irgsp1_rep	CDS	18313139	18313359	.	-	0	Parent=Os02t0511500-01
Chr02	irgsp1_rep	CDS	18312497	18312578	.	-	1	Parent=Os02t0511500-01
Chr02	irgsp1_rep	CDS	18312281	18312361	.	-	0	Parent=Os02t0511500-01
Chr02	irgsp1_rep	three_prime_UTR	18312017	18312280	.	-	.	Parent=Os02t0511500-01
Chr02	irgsp1_rep	mRNA	18335015	18335786	.	+	.	ID=Os02t0511600-01;Name=Os02t0511600-01;Locus_id=Os02g0511600;Note=Glycosyl transferase%2C family 31 protein.;Transcript_evidence=AK111241 (DDBJ%2C Best hit);ORF_evidence=NP_001147392.1 (RefSeq);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Glycosyl transferase%2C family 31 (IPR002659);NIAS_FLcDNA=002-180-C12;Expression=AK111241;TENOR=Os02t0511600-01;KEGG=Os02t0511600-01
Chr02	irgsp1_rep	five_prime_UTR	18335015	18335054	.	+	.	Parent=Os02t0511600-01
Chr02	irgsp1_rep	CDS	18335055	18335124	.	+	0	Parent=Os02t0511600-01
Chr02	irgsp1_rep	CDS	18335224	18335552	.	+	2	Parent=Os02t0511600-01
Chr02	irgsp1_rep	three_prime_UTR	18335553	18335786	.	+	.	Parent=Os02t0511600-01
Chr02	irgsp1_rep	mRNA	18343574	18347034	.	-	.	ID=Os02t0511800-01;Name=Os02t0511800-01;Locus_id=Os02g0511800;Note=NOP5%2C N-terminal domain containing protein.;Transcript_evidence=AK069817 (DDBJ%2C Best hit);ORF_evidence=A2X599 (UniProt);InterPro=NOP5%2C N-terminal (IPR012974);NIAS_FLcDNA=J023031E21;TENOR=Os02t0511800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	18347033	18347034	.	-	.	Parent=Os02t0511800-01
Chr02	irgsp1_rep	CDS	18346936	18347032	.	-	0	Parent=Os02t0511800-01
Chr02	irgsp1_rep	CDS	18346678	18346788	.	-	2	Parent=Os02t0511800-01
Chr02	irgsp1_rep	CDS	18346546	18346586	.	-	2	Parent=Os02t0511800-01
Chr02	irgsp1_rep	CDS	18344905	18345072	.	-	0	Parent=Os02t0511800-01
Chr02	irgsp1_rep	CDS	18344623	18344799	.	-	0	Parent=Os02t0511800-01
Chr02	irgsp1_rep	CDS	18344211	18344480	.	-	0	Parent=Os02t0511800-01
Chr02	irgsp1_rep	CDS	18343916	18344122	.	-	0	Parent=Os02t0511800-01
Chr02	irgsp1_rep	three_prime_UTR	18343574	18343915	.	-	.	Parent=Os02t0511800-01
Chr02	irgsp1_rep	mRNA	18348858	18357419	.	+	.	ID=Os02t0511900-00;Name=Os02t0511900-00;Locus_id=Os02g0511900;Note=Similar to DNA polymerase.;Transcript_evidence=EU956885 (DDBJ);ORF_evidence=B9F072 (UniProt);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Biological Process: DNA replication (GO:0006260),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA-directed DNA polymerase activity (GO:0003887);InterPro=DNA-directed DNA polymerase%2C family B%2C exonuclease domain (IPR006133),DNA-directed DNA polymerase%2C family B (IPR006172),Ribonuclease H-like (IPR012337);TENOR=Os02t0511900-00;KEGG=Os02t0511900-00 (EC:2.7.7.7)
Chr02	irgsp1_rep	five_prime_UTR	18348858	18348887	.	+	.	Parent=Os02t0511900-00
Chr02	irgsp1_rep	CDS	18348888	18349106	.	+	0	Parent=Os02t0511900-00
Chr02	irgsp1_rep	CDS	18349784	18349849	.	+	0	Parent=Os02t0511900-00
Chr02	irgsp1_rep	CDS	18349919	18349978	.	+	0	Parent=Os02t0511900-00
Chr02	irgsp1_rep	CDS	18350081	18350176	.	+	0	Parent=Os02t0511900-00
Chr02	irgsp1_rep	CDS	18352504	18352664	.	+	0	Parent=Os02t0511900-00
Chr02	irgsp1_rep	CDS	18352919	18353007	.	+	1	Parent=Os02t0511900-00
Chr02	irgsp1_rep	CDS	18353089	18353306	.	+	2	Parent=Os02t0511900-00
Chr02	irgsp1_rep	CDS	18353870	18353956	.	+	0	Parent=Os02t0511900-00
Chr02	irgsp1_rep	CDS	18354052	18354186	.	+	0	Parent=Os02t0511900-00
Chr02	irgsp1_rep	CDS	18354566	18354688	.	+	0	Parent=Os02t0511900-00
Chr02	irgsp1_rep	CDS	18354988	18355071	.	+	0	Parent=Os02t0511900-00
Chr02	irgsp1_rep	CDS	18355240	18355404	.	+	0	Parent=Os02t0511900-00
Chr02	irgsp1_rep	CDS	18355527	18355703	.	+	0	Parent=Os02t0511900-00
Chr02	irgsp1_rep	CDS	18355877	18355990	.	+	0	Parent=Os02t0511900-00
Chr02	irgsp1_rep	CDS	18356129	18356233	.	+	0	Parent=Os02t0511900-00
Chr02	irgsp1_rep	CDS	18357273	18357419	.	+	0	Parent=Os02t0511900-00
Chr02	irgsp1_rep	mRNA	18363893	18370186	.	+	.	ID=Os02t0511901-00;Name=Os02t0511901-00;Locus_id=Os02g0511901;Note=Similar to DNA polymerase.;Transcript_evidence=AK365486 (DDBJ);ORF_evidence=B9F072 (UniProt);GO=Biological Process: DNA replication (GO:0006260),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA-directed DNA polymerase activity (GO:0003887),Molecular Function: zinc ion binding (GO:0008270);InterPro=DNA polymerase epsilon%2C catalytic subunit A%2C C-terminal (IPR013697);TENOR=Os02t0511901-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	18363893	18364084	.	+	0	Parent=Os02t0511901-00
Chr02	irgsp1_rep	CDS	18364173	18364237	.	+	0	Parent=Os02t0511901-00
Chr02	irgsp1_rep	CDS	18364863	18364995	.	+	1	Parent=Os02t0511901-00
Chr02	irgsp1_rep	CDS	18365078	18365179	.	+	0	Parent=Os02t0511901-00
Chr02	irgsp1_rep	CDS	18365264	18365347	.	+	0	Parent=Os02t0511901-00
Chr02	irgsp1_rep	CDS	18365873	18365947	.	+	0	Parent=Os02t0511901-00
Chr02	irgsp1_rep	CDS	18366035	18366094	.	+	0	Parent=Os02t0511901-00
Chr02	irgsp1_rep	CDS	18366184	18366440	.	+	0	Parent=Os02t0511901-00
Chr02	irgsp1_rep	CDS	18366777	18366825	.	+	1	Parent=Os02t0511901-00
Chr02	irgsp1_rep	CDS	18366998	18367158	.	+	0	Parent=Os02t0511901-00
Chr02	irgsp1_rep	CDS	18367230	18367296	.	+	1	Parent=Os02t0511901-00
Chr02	irgsp1_rep	CDS	18367391	18367516	.	+	0	Parent=Os02t0511901-00
Chr02	irgsp1_rep	CDS	18367639	18367809	.	+	0	Parent=Os02t0511901-00
Chr02	irgsp1_rep	CDS	18368783	18368986	.	+	0	Parent=Os02t0511901-00
Chr02	irgsp1_rep	CDS	18369276	18369382	.	+	0	Parent=Os02t0511901-00
Chr02	irgsp1_rep	CDS	18369825	18370185	.	+	1	Parent=Os02t0511901-00
Chr02	irgsp1_rep	three_prime_UTR	18370186	18370186	.	+	.	Parent=Os02t0511901-00
Chr02	irgsp1_rep	mRNA	18371455	18372715	.	-	.	ID=Os02t0512000-01;Name=Os02t0512000-01;Locus_id=Os02g0512000;CGSNL Gene Symbol=SAUR10;CGSNL Gene Name=SMALL AUXIN-UP RNA 10;Oryzabase Gene Symbol Synonym(s)=OsSAUR10;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 10;Note=Auxin responsive SAUR protein family protein.;Transcript_evidence=AK108786 (DDBJ%2C Best hit);ORF_evidence=A2X5A7 (UniProt);InterPro=Auxin responsive SAUR protein (IPR003676);NIAS_FLcDNA=002-151-B01;Oryzabase=9135;Expression=AK108786;TENOR=Os02t0512000-01;KEGG=Os02t0512000-01
Chr02	irgsp1_rep	five_prime_UTR	18372343	18372715	.	-	.	Parent=Os02t0512000-01
Chr02	irgsp1_rep	CDS	18371842	18372342	.	-	0	Parent=Os02t0512000-01
Chr02	irgsp1_rep	three_prime_UTR	18371455	18371841	.	-	.	Parent=Os02t0512000-01
Chr02	irgsp1_rep	mRNA	18379663	18380230	.	+	.	ID=Os02t0512200-01;Name=Os02t0512200-01;Locus_id=Os02g0512200;Note=Non-protein coding transcript.;Transcript_evidence=AK111015 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-174-G03;TENOR=Os02t0512200-01
Chr02	irgsp1_rep	exon	18379663	18380230	.	+	.	Parent=Os02t0512200-01
Chr02	irgsp1_rep	mRNA	18385209	18390135	.	+	.	ID=Os02t0512300-01;Name=Os02t0512300-01;Locus_id=Os02g0512300;Note=Conserved hypothetical protein.;Transcript_evidence=AK073819 (DDBJ%2C Best hit);ORF_evidence=B9F074 (UniProt);NIAS_FLcDNA=J033068G20;TENOR=Os02t0512300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	18385209	18385454	.	+	.	Parent=Os02t0512300-01
Chr02	irgsp1_rep	CDS	18385455	18385622	.	+	0	Parent=Os02t0512300-01
Chr02	irgsp1_rep	CDS	18386259	18386336	.	+	0	Parent=Os02t0512300-01
Chr02	irgsp1_rep	CDS	18386667	18386767	.	+	0	Parent=Os02t0512300-01
Chr02	irgsp1_rep	CDS	18387217	18387304	.	+	1	Parent=Os02t0512300-01
Chr02	irgsp1_rep	CDS	18387970	18388048	.	+	0	Parent=Os02t0512300-01
Chr02	irgsp1_rep	CDS	18388174	18388181	.	+	2	Parent=Os02t0512300-01
Chr02	irgsp1_rep	three_prime_UTR	18388182	18388267	.	+	.	Parent=Os02t0512300-01
Chr02	irgsp1_rep	three_prime_UTR	18388406	18388471	.	+	.	Parent=Os02t0512300-01
Chr02	irgsp1_rep	three_prime_UTR	18388789	18388845	.	+	.	Parent=Os02t0512300-01
Chr02	irgsp1_rep	three_prime_UTR	18389301	18390135	.	+	.	Parent=Os02t0512300-01
Chr02	irgsp1_rep	mRNA	18414297	18415320	.	+	.	ID=Os02t0512400-01;Name=Os02t0512400-01;Locus_id=Os02g0512400;RAP-DB Gene Symbol Synonym(s)=GRX8%2C OsGRX8%2C OsROXY1%2C OsROXY2;RAP-DB Gene Name Synonym(s)=GLUTAREDOXIN 8%2C glutaredoxin 8;CGSNL Gene Symbol=GRX8;CGSNL Gene Name=GLUTAREDOXIN 8;Oryzabase Gene Symbol Synonym(s)=OsGRX8%2C OsROXY1%2C OsROXY2;Oryzabase Gene Name Synonym(s)=glutaredoxin 8;Note=CC-type glutaredoxin%2C Abiotic stress response%2C Floral organ development and pathogen response;Transcript_evidence=AK073461;ORF_evidence=Q6K609;GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin-like%2C plant II (IPR011905),Thioredoxin-like fold (IPR012336),Glutaredoxin (IPR002109);NIAS_FLcDNA=J033040O17;Manual Curation=December 9%2C 2016;Literature_PMID=23918184,19825617;Oryzabase=13563;Expression=AK073461;TENOR=Os02t0512400-01;KEGG=Os02t0512400-01
Chr02	irgsp1_rep	five_prime_UTR	18414297	18414466	.	+	.	Parent=Os02t0512400-01
Chr02	irgsp1_rep	CDS	18414467	18414874	.	+	0	Parent=Os02t0512400-01
Chr02	irgsp1_rep	three_prime_UTR	18414875	18415320	.	+	.	Parent=Os02t0512400-01
Chr02	irgsp1_rep	mRNA	18446003	18450507	.	+	.	ID=Os02t0513000-01;Name=Os02t0513000-01;Locus_id=Os02g0513000;CGSNL Gene Symbol=RLCK72;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 72;Oryzabase Gene Symbol Synonym(s)=OsRLCK72;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 72;Note=Similar to Receptor protein kinase-like protein.;Transcript_evidence=AK120921 (DDBJ%2C Best hit);ORF_evidence=B6TEK0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023035D12;Oryzabase=18787;Expression=AK120921;TENOR=Os02t0513000-01;KEGG=Os02t0513000-01
Chr02	irgsp1_rep	five_prime_UTR	18446003	18446305	.	+	.	Parent=Os02t0513000-01
Chr02	irgsp1_rep	CDS	18446306	18446540	.	+	0	Parent=Os02t0513000-01
Chr02	irgsp1_rep	CDS	18447001	18447203	.	+	2	Parent=Os02t0513000-01
Chr02	irgsp1_rep	CDS	18447815	18448004	.	+	0	Parent=Os02t0513000-01
Chr02	irgsp1_rep	CDS	18448841	18449232	.	+	2	Parent=Os02t0513000-01
Chr02	irgsp1_rep	CDS	18449712	18450272	.	+	0	Parent=Os02t0513000-01
Chr02	irgsp1_rep	three_prime_UTR	18450273	18450507	.	+	.	Parent=Os02t0513000-01
Chr02	irgsp1_rep	mRNA	18454408	18457136	.	-	.	ID=Os02t0513100-01;Name=Os02t0513100-01;Locus_id=Os02g0513100;RAP-DB Gene Symbol Synonym(s)=OsSWEET15;RAP-DB Gene Name Synonym(s)=Sugars Will Eventually be Exported Transporter 15;CGSNL Gene Symbol=SWEET15;CGSNL Gene Name=SWEET15;Oryzabase Gene Symbol Synonym(s)=OsSWEET15;Note=Clade III SWEET transporter%2C Sucrose transporter%2C Regulation of sucrose transport in response to drought and salt stress%2C TAL effector-mediated susceptibility to bacterial pathogen;Transcript_evidence=AK103266;ORF_evidence=Q6K602;GO=Cellular Component: integral component of membrane (GO:0016021);InterPro=SWEET sugar transporter (IPR004316);NIAS_FLcDNA=J033124G19;Manual Curation=September 23%2C 2020;Literature_PMID=32940908,23879865;Oryzabase=9106;Expression=AK103266;TENOR=Os02t0513100-01;KEGG=Os02t0513100-01;Subcellular location=plasma membrane (GO:0005886)
Chr02	irgsp1_rep	five_prime_UTR	18456940	18457136	.	-	.	Parent=Os02t0513100-01
Chr02	irgsp1_rep	CDS	18456885	18456939	.	-	0	Parent=Os02t0513100-01
Chr02	irgsp1_rep	CDS	18456243	18456279	.	-	2	Parent=Os02t0513100-01
Chr02	irgsp1_rep	CDS	18455411	18455783	.	-	1	Parent=Os02t0513100-01
Chr02	irgsp1_rep	CDS	18454813	18455307	.	-	0	Parent=Os02t0513100-01
Chr02	irgsp1_rep	three_prime_UTR	18454408	18454812	.	-	.	Parent=Os02t0513100-01
Chr02	irgsp1_rep	mRNA	18480184	18481399	.	-	.	ID=Os02t0513400-00;Name=Os02t0513400-00;Locus_id=Os02g0513400;Note=Protein of unknown function DUF1677%2C Oryza sativa domain containing protein.;Transcript_evidence=AK372354 (DDBJ);ORF_evidence=Q6K5Z9 (UniProt);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);TENOR=Os02t0513400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	18480209	18481399	.	-	0	Parent=Os02t0513400-00
Chr02	irgsp1_rep	three_prime_UTR	18480184	18480208	.	-	.	Parent=Os02t0513400-00
Chr02	irgsp1_rep	mRNA	18495340	18498553	.	-	.	ID=Os02t0513700-00;Name=Os02t0513700-00;Locus_id=Os02g0513700;Note=Similar to HAT dimerisation domain-containing protein-like.;Transcript_evidence=AK241867 (DDBJ%2C Secondary hit);ORF_evidence=C8TFH5 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677);InterPro=Zinc finger%2C BED-type predicted (IPR003656),Domain of unknown function DUF659 (IPR007021),Ribonuclease H-like (IPR012337);TENOR=Os02t0513700-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	18498256	18498553	.	-	.	Parent=Os02t0513700-00
Chr02	irgsp1_rep	CDS	18498255	18498255	.	-	0	Parent=Os02t0513700-00
Chr02	irgsp1_rep	CDS	18497550	18498101	.	-	2	Parent=Os02t0513700-00
Chr02	irgsp1_rep	CDS	18496700	18497454	.	-	2	Parent=Os02t0513700-00
Chr02	irgsp1_rep	three_prime_UTR	18496376	18496699	.	-	.	Parent=Os02t0513700-00
Chr02	irgsp1_rep	three_prime_UTR	18495938	18496291	.	-	.	Parent=Os02t0513700-00
Chr02	irgsp1_rep	three_prime_UTR	18495340	18495852	.	-	.	Parent=Os02t0513700-00
Chr02	irgsp1_rep	mRNA	18501234	18509632	.	-	.	ID=Os02t0513800-01;Name=Os02t0513800-01;Locus_id=Os02g0513800;Note=Ovarian tumour%2C otubain domain containing protein.;Transcript_evidence=AK120082 (DDBJ%2C Best hit);ORF_evidence=B9F079 (UniProt);InterPro=Ovarian tumour%2C otubain (IPR003323),Peptidase C65%2C otubain (IPR019400);NIAS_FLcDNA=J013014C18;TENOR=Os02t0513800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	18509631	18509632	.	-	.	Parent=Os02t0513800-01
Chr02	irgsp1_rep	CDS	18509358	18509630	.	-	0	Parent=Os02t0513800-01
Chr02	irgsp1_rep	CDS	18509166	18509258	.	-	0	Parent=Os02t0513800-01
Chr02	irgsp1_rep	CDS	18507521	18507610	.	-	0	Parent=Os02t0513800-01
Chr02	irgsp1_rep	CDS	18506903	18507073	.	-	0	Parent=Os02t0513800-01
Chr02	irgsp1_rep	CDS	18506699	18506818	.	-	0	Parent=Os02t0513800-01
Chr02	irgsp1_rep	CDS	18506007	18506077	.	-	0	Parent=Os02t0513800-01
Chr02	irgsp1_rep	CDS	18505857	18505903	.	-	1	Parent=Os02t0513800-01
Chr02	irgsp1_rep	CDS	18505676	18505779	.	-	2	Parent=Os02t0513800-01
Chr02	irgsp1_rep	CDS	18505276	18505563	.	-	0	Parent=Os02t0513800-01
Chr02	irgsp1_rep	CDS	18504976	18505065	.	-	0	Parent=Os02t0513800-01
Chr02	irgsp1_rep	CDS	18503236	18503325	.	-	0	Parent=Os02t0513800-01
Chr02	irgsp1_rep	CDS	18501494	18502339	.	-	0	Parent=Os02t0513800-01
Chr02	irgsp1_rep	three_prime_UTR	18501234	18501493	.	-	.	Parent=Os02t0513800-01
Chr02	irgsp1_rep	mRNA	18520220	18520952	.	-	.	ID=Os02t0513976-00;Name=Os02t0513976-00;Locus_id=Os02g0513976;Note=Similar to Zinc finger%2C C2H2 type family protein%2C expressed.;Transcript_evidence=AK376150 (DDBJ);ORF_evidence=Q10PE6 (UniProt);TENOR=Os02t0513976-00
Chr02	irgsp1_rep	CDS	18520242	18520952	.	-	0	Parent=Os02t0513976-00
Chr02	irgsp1_rep	three_prime_UTR	18520220	18520241	.	-	.	Parent=Os02t0513976-00
Chr02	irgsp1_rep	mRNA	18531102	18531592	.	-	.	ID=Os02t0514150-00;Name=Os02t0514150-00;Locus_id=Os02g0514150;Note=Hypothetical conserved gene.;Transcript_evidence=CT835351 (DDBJ%2C Best hit);ORF_evidence=Q6K9E2 (UniProt);TENOR=Os02t0514150-00
Chr02	irgsp1_rep	five_prime_UTR	18531358	18531592	.	-	.	Parent=Os02t0514150-00
Chr02	irgsp1_rep	CDS	18531102	18531357	.	-	0	Parent=Os02t0514150-00
Chr02	irgsp1_rep	mRNA	18537130	18540652	.	-	.	ID=Os02t0514326-00;Name=Os02t0514326-00;Locus_id=Os02g0514326;Note=Hypothetical protein.;Transcript_evidence=tplb0049i15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0514326-00
Chr02	irgsp1_rep	five_prime_UTR	18540306	18540652	.	-	.	Parent=Os02t0514326-00
Chr02	irgsp1_rep	five_prime_UTR	18540003	18540217	.	-	.	Parent=Os02t0514326-00
Chr02	irgsp1_rep	five_prime_UTR	18539784	18539896	.	-	.	Parent=Os02t0514326-00
Chr02	irgsp1_rep	five_prime_UTR	18539500	18539684	.	-	.	Parent=Os02t0514326-00
Chr02	irgsp1_rep	five_prime_UTR	18539292	18539380	.	-	.	Parent=Os02t0514326-00
Chr02	irgsp1_rep	five_prime_UTR	18538399	18539125	.	-	.	Parent=Os02t0514326-00
Chr02	irgsp1_rep	five_prime_UTR	18537953	18538315	.	-	.	Parent=Os02t0514326-00
Chr02	irgsp1_rep	CDS	18537701	18537952	.	-	0	Parent=Os02t0514326-00
Chr02	irgsp1_rep	three_prime_UTR	18537316	18537700	.	-	.	Parent=Os02t0514326-00
Chr02	irgsp1_rep	three_prime_UTR	18537130	18537207	.	-	.	Parent=Os02t0514326-00
Chr02	irgsp1_rep	mRNA	18537053	18540807	.	+	.	ID=Os02t0514500-01;Name=Os02t0514500-01;Locus_id=Os02g0514500;RAP-DB Gene Symbol Synonym(s)=OsGDPD2;RAP-DB Gene Name Synonym(s)=Glycerophosphodiester phosphodiesterase 2;CGSNL Gene Symbol=GDPD2;CGSNL Gene Name=GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE 2;Oryzabase Gene Symbol Synonym(s)=OsGDPD2;Oryzabase Gene Name Synonym(s)=Glycerophosphodiester phosphodiesterase 2;Note=Glycerophosphodiester phosphodiesterase%2C Response to Pi deficiency%2C Low Pi acclimation;Transcript_evidence=AK064485 (truncated),Inferred from literature;ORF_evidence=Inferred from literature;GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: phosphoric diester hydrolase activity (GO:0008081);InterPro=PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain superfamily (IPR017946),Glycerophosphodiester phosphodiesterase domain (IPR030395);NIAS_FLcDNA=002-111-B07 (truncated);Manual Curation=October 29%2C 2018;Literature_PMID=30307043;Oryzabase=22679;TENOR=Os02t0514500-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	18537053	18537130	.	+	.	Parent=Os02t0514500-01
Chr02	irgsp1_rep	CDS	18537131	18537221	.	+	0	Parent=Os02t0514500-01
Chr02	irgsp1_rep	CDS	18537305	18537516	.	+	2	Parent=Os02t0514500-01
Chr02	irgsp1_rep	CDS	18539069	18539128	.	+	0	Parent=Os02t0514500-01
Chr02	irgsp1_rep	CDS	18539295	18539375	.	+	0	Parent=Os02t0514500-01
Chr02	irgsp1_rep	CDS	18539490	18539690	.	+	0	Parent=Os02t0514500-01
Chr02	irgsp1_rep	CDS	18539792	18539887	.	+	0	Parent=Os02t0514500-01
Chr02	irgsp1_rep	CDS	18539997	18540193	.	+	0	Parent=Os02t0514500-01
Chr02	irgsp1_rep	CDS	18540284	18540512	.	+	1	Parent=Os02t0514500-01
Chr02	irgsp1_rep	three_prime_UTR	18540513	18540807	.	+	.	Parent=Os02t0514500-01
Chr02	irgsp1_rep	mRNA	18545596	18552443	.	+	.	ID=Os02t0514700-00;Name=Os02t0514700-00;Locus_id=Os02g0514700;Note=Similar to H0718E12.4 protein.;Transcript_evidence=AK249197 (DDBJ);ORF_evidence=Q01LB1 (UniProt);GO=Biological Process: tricarboxylic acid cycle (GO:0006099),Biological Process: metabolic process (GO:0008152),Cellular Component: oxoglutarate dehydrogenase complex (GO:0045252),Molecular Function: dihydrolipoyllysine-residue succinyltransferase activity (GO:0004149),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Biotin/lipoyl attachment (IPR000089),2-oxoacid dehydrogenase acyltransferase%2C catalytic domain (IPR001078),2-oxo acid dehydrogenase%2C lipoyl-binding site (IPR003016),Dihydrolipoamide succinyltransferase (IPR006255),Single hybrid motif (IPR011053),Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os02t0514700-00;KEGG=Os02t0514700-00 (EC:2.3.1.61)
Chr02	irgsp1_rep	five_prime_UTR	18545596	18545664	.	+	.	Parent=Os02t0514700-00
Chr02	irgsp1_rep	five_prime_UTR	18549536	18549601	.	+	.	Parent=Os02t0514700-00
Chr02	irgsp1_rep	CDS	18549602	18549618	.	+	0	Parent=Os02t0514700-00
Chr02	irgsp1_rep	CDS	18549851	18549918	.	+	1	Parent=Os02t0514700-00
Chr02	irgsp1_rep	CDS	18550004	18550078	.	+	2	Parent=Os02t0514700-00
Chr02	irgsp1_rep	CDS	18550146	18550201	.	+	2	Parent=Os02t0514700-00
Chr02	irgsp1_rep	CDS	18550302	18550346	.	+	0	Parent=Os02t0514700-00
Chr02	irgsp1_rep	CDS	18550441	18550692	.	+	0	Parent=Os02t0514700-00
Chr02	irgsp1_rep	CDS	18550803	18550897	.	+	0	Parent=Os02t0514700-00
Chr02	irgsp1_rep	CDS	18551331	18551421	.	+	1	Parent=Os02t0514700-00
Chr02	irgsp1_rep	CDS	18551573	18551683	.	+	0	Parent=Os02t0514700-00
Chr02	irgsp1_rep	CDS	18551773	18551967	.	+	0	Parent=Os02t0514700-00
Chr02	irgsp1_rep	CDS	18552044	18552235	.	+	0	Parent=Os02t0514700-00
Chr02	irgsp1_rep	three_prime_UTR	18552236	18552443	.	+	.	Parent=Os02t0514700-00
Chr02	irgsp1_rep	mRNA	18546596	18547433	.	-	.	ID=Os02t0514712-00;Name=Os02t0514712-00;Locus_id=Os02g0514712;Note=Similar to H0818E04.19 protein.;Transcript_evidence=BT034377 (DDBJ);ORF_evidence=Q01JI7 (UniProt);TENOR=Os02t0514712-00
Chr02	irgsp1_rep	CDS	18547062	18547433	.	-	0	Parent=Os02t0514712-00
Chr02	irgsp1_rep	CDS	18546596	18546856	.	-	0	Parent=Os02t0514712-00
Chr02	irgsp1_rep	mRNA	18550003	18552247	.	-	.	ID=Os02t0514750-00;Name=Os02t0514750-00;Locus_id=Os02g0514750;Note=Non-protein coding transcript.;Transcript_evidence=BT019313 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0514750-00
Chr02	irgsp1_rep	exon	18552042	18552247	.	-	.	Parent=Os02t0514750-00
Chr02	irgsp1_rep	exon	18551757	18551965	.	-	.	Parent=Os02t0514750-00
Chr02	irgsp1_rep	exon	18551561	18551666	.	-	.	Parent=Os02t0514750-00
Chr02	irgsp1_rep	exon	18551331	18551407	.	-	.	Parent=Os02t0514750-00
Chr02	irgsp1_rep	exon	18550790	18550897	.	-	.	Parent=Os02t0514750-00
Chr02	irgsp1_rep	exon	18550414	18550672	.	-	.	Parent=Os02t0514750-00
Chr02	irgsp1_rep	exon	18550130	18550214	.	-	.	Parent=Os02t0514750-00
Chr02	irgsp1_rep	exon	18550003	18550059	.	-	.	Parent=Os02t0514750-00
Chr02	irgsp1_rep	mRNA	18554160	18554768	.	-	.	ID=Os02t0514800-00;Name=Os02t0514800-00;Locus_id=Os02g0514800;Note=Conserved hypothetical protein.;Transcript_evidence=AK375508 (DDBJ);ORF_evidence=Q6K9D7 (UniProt);TENOR=Os02t0514800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	18554448	18554768	.	-	0	Parent=Os02t0514800-00
Chr02	irgsp1_rep	three_prime_UTR	18554160	18554447	.	-	.	Parent=Os02t0514800-00
Chr02	irgsp1_rep	mRNA	18564241	18568522	.	+	.	ID=Os02t0515000-01;Name=Os02t0515000-01;Locus_id=Os02g0515000;Note=Hypothetical conserved gene.;Transcript_evidence=AK066257 (DDBJ%2C Best hit);ORF_evidence=F2EIA7 (UniProt);NIAS_FLcDNA=J013059E11;Expression=AK066257;TENOR=Os02t0515000-01;KEGG=Os02t0515000-01
Chr02	irgsp1_rep	five_prime_UTR	18564241	18564383	.	+	.	Parent=Os02t0515000-01
Chr02	irgsp1_rep	five_prime_UTR	18565036	18565106	.	+	.	Parent=Os02t0515000-01
Chr02	irgsp1_rep	CDS	18565107	18565213	.	+	0	Parent=Os02t0515000-01
Chr02	irgsp1_rep	CDS	18565299	18565618	.	+	1	Parent=Os02t0515000-01
Chr02	irgsp1_rep	CDS	18565716	18565723	.	+	2	Parent=Os02t0515000-01
Chr02	irgsp1_rep	three_prime_UTR	18565724	18565948	.	+	.	Parent=Os02t0515000-01
Chr02	irgsp1_rep	three_prime_UTR	18566351	18566499	.	+	.	Parent=Os02t0515000-01
Chr02	irgsp1_rep	three_prime_UTR	18566585	18566709	.	+	.	Parent=Os02t0515000-01
Chr02	irgsp1_rep	three_prime_UTR	18566906	18567110	.	+	.	Parent=Os02t0515000-01
Chr02	irgsp1_rep	three_prime_UTR	18567749	18567996	.	+	.	Parent=Os02t0515000-01
Chr02	irgsp1_rep	three_prime_UTR	18568103	18568522	.	+	.	Parent=Os02t0515000-01
Chr02	irgsp1_rep	mRNA	18564257	18568541	.	+	.	ID=Os02t0515000-02;Name=Os02t0515000-02;Locus_id=Os02g0515000;Note=Conserved hypothetical protein.;Transcript_evidence=AK065046 (DDBJ%2C Best hit);ORF_evidence=Q6K9D4 (UniProt);NIAS_FLcDNA=J013001I05;TENOR=Os02t0515000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	18564257	18564383	.	+	.	Parent=Os02t0515000-02
Chr02	irgsp1_rep	five_prime_UTR	18565036	18565106	.	+	.	Parent=Os02t0515000-02
Chr02	irgsp1_rep	CDS	18565107	18565213	.	+	0	Parent=Os02t0515000-02
Chr02	irgsp1_rep	CDS	18565299	18565622	.	+	1	Parent=Os02t0515000-02
Chr02	irgsp1_rep	CDS	18565716	18565980	.	+	1	Parent=Os02t0515000-02
Chr02	irgsp1_rep	three_prime_UTR	18565981	18566085	.	+	.	Parent=Os02t0515000-02
Chr02	irgsp1_rep	three_prime_UTR	18566353	18566499	.	+	.	Parent=Os02t0515000-02
Chr02	irgsp1_rep	three_prime_UTR	18566585	18566709	.	+	.	Parent=Os02t0515000-02
Chr02	irgsp1_rep	three_prime_UTR	18566906	18567110	.	+	.	Parent=Os02t0515000-02
Chr02	irgsp1_rep	three_prime_UTR	18567749	18567996	.	+	.	Parent=Os02t0515000-02
Chr02	irgsp1_rep	three_prime_UTR	18568103	18568541	.	+	.	Parent=Os02t0515000-02
Chr02	irgsp1_rep	mRNA	18569792	18573161	.	-	.	ID=Os02t0515100-01;Name=Os02t0515100-01;Locus_id=Os02g0515100;Note=Protamine P1 domain containing protein.;Transcript_evidence=AK106640 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-113-E03;Expression=AK106640;TENOR=Os02t0515100-01;KEGG=Os02t0515100-01
Chr02	irgsp1_rep	five_prime_UTR	18573006	18573161	.	-	.	Parent=Os02t0515100-01
Chr02	irgsp1_rep	five_prime_UTR	18570739	18572445	.	-	.	Parent=Os02t0515100-01
Chr02	irgsp1_rep	CDS	18570184	18570738	.	-	0	Parent=Os02t0515100-01
Chr02	irgsp1_rep	three_prime_UTR	18569792	18570183	.	-	.	Parent=Os02t0515100-01
Chr02	irgsp1_rep	mRNA	18569980	18572286	.	+	.	ID=Os02t0515125-00;Name=Os02t0515125-00;Locus_id=Os02g0515125;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6K9D3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);TENOR=Os02t0515125-00;KEGG=Os02t0515125-00
Chr02	irgsp1_rep	CDS	18569980	18570014	.	+	0	Parent=Os02t0515125-00
Chr02	irgsp1_rep	CDS	18570061	18571159	.	+	1	Parent=Os02t0515125-00
Chr02	irgsp1_rep	CDS	18571456	18572286	.	+	0	Parent=Os02t0515125-00
Chr02	irgsp1_rep	mRNA	18573594	18575404	.	+	.	ID=Os02t0515150-01;Name=Os02t0515150-01;Locus_id=Os02g0515150;Note=Conserved hypothetical protein.;Transcript_evidence=AK242856 (DDBJ%2C Best hit);ORF_evidence=NP_001172984.1 (RefSeq);NIAS_FLcDNA=J090073K21;TENOR=Os02t0515150-01;KEGG=Os02t0515150-01
Chr02	irgsp1_rep	five_prime_UTR	18573594	18574095	.	+	.	Parent=Os02t0515150-01
Chr02	irgsp1_rep	CDS	18574096	18574338	.	+	0	Parent=Os02t0515150-01
Chr02	irgsp1_rep	three_prime_UTR	18574339	18575404	.	+	.	Parent=Os02t0515150-01
Chr02	irgsp1_rep	mRNA	18575251	18581665	.	-	.	ID=Os02t0515200-01;Name=Os02t0515200-01;Locus_id=Os02g0515200;Note=BAR domain containing protein.;Transcript_evidence=AK100535 (DDBJ%2C Best hit);ORF_evidence=A2X5C7 (UniProt);GO=Cellular Component: cytoplasm (GO:0005737),Molecular Function: protein binding (GO:0005515);InterPro=BAR (IPR004148);NIAS_FLcDNA=J023101N14;Expression=AK100535;TENOR=Os02t0515200-01;KEGG=Os02t0515200-01
Chr02	irgsp1_rep	five_prime_UTR	18581478	18581665	.	-	.	Parent=Os02t0515200-01
Chr02	irgsp1_rep	CDS	18581352	18581477	.	-	0	Parent=Os02t0515200-01
Chr02	irgsp1_rep	CDS	18579460	18579532	.	-	0	Parent=Os02t0515200-01
Chr02	irgsp1_rep	CDS	18579273	18579350	.	-	2	Parent=Os02t0515200-01
Chr02	irgsp1_rep	CDS	18579049	18579110	.	-	2	Parent=Os02t0515200-01
Chr02	irgsp1_rep	CDS	18578855	18578923	.	-	0	Parent=Os02t0515200-01
Chr02	irgsp1_rep	CDS	18578622	18578650	.	-	0	Parent=Os02t0515200-01
Chr02	irgsp1_rep	CDS	18578329	18578536	.	-	1	Parent=Os02t0515200-01
Chr02	irgsp1_rep	CDS	18578026	18578256	.	-	0	Parent=Os02t0515200-01
Chr02	irgsp1_rep	CDS	18577540	18577593	.	-	0	Parent=Os02t0515200-01
Chr02	irgsp1_rep	CDS	18576264	18577194	.	-	0	Parent=Os02t0515200-01
Chr02	irgsp1_rep	CDS	18575585	18575595	.	-	2	Parent=Os02t0515200-01
Chr02	irgsp1_rep	three_prime_UTR	18575251	18575584	.	-	.	Parent=Os02t0515200-01
Chr02	irgsp1_rep	mRNA	18577907	18581665	.	-	.	ID=Os02t0515200-02;Name=Os02t0515200-02;Locus_id=Os02g0515200;Note=Similar to hydroxyproline-rich glycoprotein family protein.;Transcript_evidence=AK108843 (DDBJ%2C Best hit);ORF_evidence=NP_180907.2 (RefSeq);GO=Cellular Component: cytoplasm (GO:0005737),Molecular Function: protein binding (GO:0005515);InterPro=BAR (IPR004148);NIAS_FLcDNA=002-151-H11;Expression=AK108843;TENOR=Os02t0515200-02;KEGG=Os02t0515200-02
Chr02	irgsp1_rep	five_prime_UTR	18581478	18581665	.	-	.	Parent=Os02t0515200-02
Chr02	irgsp1_rep	CDS	18581352	18581477	.	-	0	Parent=Os02t0515200-02
Chr02	irgsp1_rep	CDS	18579460	18579532	.	-	0	Parent=Os02t0515200-02
Chr02	irgsp1_rep	CDS	18579273	18579350	.	-	2	Parent=Os02t0515200-02
Chr02	irgsp1_rep	CDS	18579049	18579110	.	-	2	Parent=Os02t0515200-02
Chr02	irgsp1_rep	CDS	18578855	18578923	.	-	0	Parent=Os02t0515200-02
Chr02	irgsp1_rep	CDS	18578622	18578650	.	-	0	Parent=Os02t0515200-02
Chr02	irgsp1_rep	CDS	18578329	18578536	.	-	1	Parent=Os02t0515200-02
Chr02	irgsp1_rep	CDS	18577939	18578256	.	-	0	Parent=Os02t0515200-02
Chr02	irgsp1_rep	three_prime_UTR	18577907	18577938	.	-	.	Parent=Os02t0515200-02
Chr02	irgsp1_rep	mRNA	18580778	18581665	.	-	.	ID=Os02t0515200-03;Name=Os02t0515200-03;Locus_id=Os02g0515200;Note=Hypothetical conserved gene.;Transcript_evidence=AK109156 (DDBJ%2C Best hit);ORF_evidence=Q67UP0 (UniProt);NIAS_FLcDNA=002-155-G03;TENOR=Os02t0515200-03;KEGG=Os02t0515200-03
Chr02	irgsp1_rep	five_prime_UTR	18581478	18581665	.	-	.	Parent=Os02t0515200-03
Chr02	irgsp1_rep	CDS	18581319	18581477	.	-	0	Parent=Os02t0515200-03
Chr02	irgsp1_rep	three_prime_UTR	18580778	18581318	.	-	.	Parent=Os02t0515200-03
Chr02	irgsp1_rep	mRNA	18592626	18596390	.	-	.	ID=Os02t0515600-01;Name=Os02t0515600-01;Locus_id=Os02g0515600;Note=LPS-induced tumor necrosis factor alpha factor domain containing protein.;Transcript_evidence=AK058947 (DDBJ%2C Best hit);ORF_evidence=NP_001150357.1 (RefSeq);InterPro=LPS-induced tumor necrosis factor alpha factor (IPR006629);NIAS_FLcDNA=001-020-A03;Expression=AK058947;TENOR=Os02t0515600-01;KEGG=Os02t0515600-01
Chr02	irgsp1_rep	five_prime_UTR	18596303	18596390	.	-	.	Parent=Os02t0515600-01
Chr02	irgsp1_rep	CDS	18596049	18596302	.	-	0	Parent=Os02t0515600-01
Chr02	irgsp1_rep	CDS	18592981	18593107	.	-	1	Parent=Os02t0515600-01
Chr02	irgsp1_rep	CDS	18592803	18592886	.	-	0	Parent=Os02t0515600-01
Chr02	irgsp1_rep	three_prime_UTR	18592626	18592802	.	-	.	Parent=Os02t0515600-01
Chr02	irgsp1_rep	mRNA	18639596	18639889	.	+	.	ID=Os02t0516301-00;Name=Os02t0516301-00;Locus_id=Os02g0516301;Note=Hypothetical protein.;Transcript_evidence=AK330647 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0516301-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	18639596	18639596	.	+	.	Parent=Os02t0516301-00
Chr02	irgsp1_rep	CDS	18639597	18639889	.	+	0	Parent=Os02t0516301-00
Chr02	irgsp1_rep	mRNA	18639136	18641888	.	-	.	ID=Os02t0516400-01;Name=Os02t0516400-01;Locus_id=Os02g0516400;RAP-DB Gene Symbol Synonym(s)=CFL1;RAP-DB Gene Name Synonym(s)=curly flag leaf1;Oryzabase Gene Symbol Synonym(s)=CFL1;Oryzabase Gene Name Synonym(s)=curly flag leaf1;Note=WW domain protein%2C Regulation of cuticle development;Transcript_evidence=Inferred from literature;ORF_evidence=Q0E0W7;GO=Molecular Function: protein binding (GO:0005515);InterPro=WW domain (IPR001202);Manual Curation=May 12%2C 2017;Literature_PMID=21954461;Oryzabase=10526;TENOR=Os02t0516400-00
Chr02	irgsp1_rep	CDS	18641688	18641888	.	-	0	Parent=Os02t0516400-01
Chr02	irgsp1_rep	CDS	18639496	18640119	.	-	0	Parent=Os02t0516400-01
Chr02	irgsp1_rep	three_prime_UTR	18639136	18639495	.	-	.	Parent=Os02t0516400-01
Chr02	irgsp1_rep	mRNA	18649297	18655266	.	-	.	ID=Os02t0516600-01;Name=Os02t0516600-01;Locus_id=Os02g0516600;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK068618 (DDBJ%2C Best hit);ORF_evidence=B6UER3 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J013157F12;Expression=AK068618;TENOR=Os02t0516600-01;KEGG=Os02t0516600-01
Chr02	irgsp1_rep	five_prime_UTR	18655184	18655266	.	-	.	Parent=Os02t0516600-01
Chr02	irgsp1_rep	CDS	18655000	18655183	.	-	0	Parent=Os02t0516600-01
Chr02	irgsp1_rep	CDS	18654002	18654048	.	-	2	Parent=Os02t0516600-01
Chr02	irgsp1_rep	CDS	18652624	18653877	.	-	0	Parent=Os02t0516600-01
Chr02	irgsp1_rep	CDS	18652449	18652537	.	-	0	Parent=Os02t0516600-01
Chr02	irgsp1_rep	CDS	18652035	18652137	.	-	1	Parent=Os02t0516600-01
Chr02	irgsp1_rep	CDS	18651857	18651961	.	-	0	Parent=Os02t0516600-01
Chr02	irgsp1_rep	CDS	18650279	18650411	.	-	0	Parent=Os02t0516600-01
Chr02	irgsp1_rep	CDS	18649913	18650074	.	-	2	Parent=Os02t0516600-01
Chr02	irgsp1_rep	CDS	18649647	18649804	.	-	2	Parent=Os02t0516600-01
Chr02	irgsp1_rep	three_prime_UTR	18649297	18649646	.	-	.	Parent=Os02t0516600-01
Chr02	irgsp1_rep	mRNA	18649367	18653201	.	-	.	ID=Os02t0516600-02;Name=Os02t0516600-02;Locus_id=Os02g0516600;Note=Similar to zinc finger%2C C3HC4 type family protein.;Transcript_evidence=AK058519 (DDBJ%2C Best hit);ORF_evidence=B6UER3 (UniProt);NIAS_FLcDNA=001-016-H05;Expression=AK058519;TENOR=Os02t0516600-02;KEGG=Os02t0516600-02
Chr02	irgsp1_rep	five_prime_UTR	18653200	18653201	.	-	.	Parent=Os02t0516600-02
Chr02	irgsp1_rep	CDS	18652624	18653199	.	-	0	Parent=Os02t0516600-02
Chr02	irgsp1_rep	CDS	18652449	18652537	.	-	0	Parent=Os02t0516600-02
Chr02	irgsp1_rep	CDS	18652035	18652137	.	-	1	Parent=Os02t0516600-02
Chr02	irgsp1_rep	CDS	18651857	18651961	.	-	0	Parent=Os02t0516600-02
Chr02	irgsp1_rep	CDS	18650279	18650411	.	-	0	Parent=Os02t0516600-02
Chr02	irgsp1_rep	CDS	18649913	18650074	.	-	2	Parent=Os02t0516600-02
Chr02	irgsp1_rep	CDS	18649647	18649804	.	-	2	Parent=Os02t0516600-02
Chr02	irgsp1_rep	three_prime_UTR	18649367	18649646	.	-	.	Parent=Os02t0516600-02
Chr02	irgsp1_rep	mRNA	18658003	18662005	.	-	.	ID=Os02t0516800-00;Name=Os02t0516800-00;Locus_id=Os02g0516800;CGSNL Gene Symbol=MSL11;CGSNL Gene Name=MYB/SANT-LIKE 11;Oryzabase Gene Symbol Synonym(s)=OsMSL11;Oryzabase Gene Name Synonym(s)=Myb/SANT-LIKE 11;Note=Conserved hypothetical protein.;Transcript_evidence=AK367735 (DDBJ);ORF_evidence=B8AIN0 (UniProt);Oryzabase=22953;TENOR=Os02t0516800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	18661048	18662005	.	-	0	Parent=Os02t0516800-00
Chr02	irgsp1_rep	CDS	18658003	18658385	.	-	2	Parent=Os02t0516800-00
Chr02	irgsp1_rep	mRNA	18661023	18662179	.	+	.	ID=Os02t0516901-00;Name=Os02t0516901-00;Locus_id=Os02g0516901;Note=Hypothetical gene.;Transcript_evidence=CT835475 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os02t0516901-00;KEGG=Os02t0516901-00
Chr02	irgsp1_rep	five_prime_UTR	18661023	18661024	.	+	.	Parent=Os02t0516901-00
Chr02	irgsp1_rep	CDS	18661025	18661897	.	+	0	Parent=Os02t0516901-00
Chr02	irgsp1_rep	three_prime_UTR	18661898	18661962	.	+	.	Parent=Os02t0516901-00
Chr02	irgsp1_rep	three_prime_UTR	18661979	18662179	.	+	.	Parent=Os02t0516901-00
Chr02	irgsp1_rep	mRNA	18705702	18711996	.	+	.	ID=Os02t0517300-01;Name=Os02t0517300-01;Locus_id=Os02g0517300;Note=Topoisomerase II-associated protein PAT1 domain containing protein.;Transcript_evidence=AK067500 (DDBJ%2C Best hit);ORF_evidence=A3A7D3 (UniProt);InterPro=Topoisomerase II-associated protein PAT1 (IPR019167);NIAS_FLcDNA=J013111P10;Expression=AK067500;TENOR=Os02t0517300-01;KEGG=Os02t0517300-01
Chr02	irgsp1_rep	five_prime_UTR	18705702	18705867	.	+	.	Parent=Os02t0517300-01
Chr02	irgsp1_rep	CDS	18705868	18705937	.	+	0	Parent=Os02t0517300-01
Chr02	irgsp1_rep	CDS	18706289	18706455	.	+	2	Parent=Os02t0517300-01
Chr02	irgsp1_rep	CDS	18707786	18707842	.	+	0	Parent=Os02t0517300-01
Chr02	irgsp1_rep	CDS	18708595	18708664	.	+	0	Parent=Os02t0517300-01
Chr02	irgsp1_rep	CDS	18709242	18711325	.	+	2	Parent=Os02t0517300-01
Chr02	irgsp1_rep	three_prime_UTR	18711326	18711996	.	+	.	Parent=Os02t0517300-01
Chr02	irgsp1_rep	mRNA	18705710	18712350	.	+	.	ID=Os02t0517300-02;Name=Os02t0517300-02;Locus_id=Os02g0517300;Note=Topoisomerase II-associated protein PAT1 domain containing protein.;Transcript_evidence=AK102498 (DDBJ%2C Best hit);ORF_evidence=A3A7D3 (UniProt);InterPro=Topoisomerase II-associated protein PAT1 (IPR019167);NIAS_FLcDNA=J033095B10;Expression=AK102498;TENOR=Os02t0517300-02;KEGG=Os02t0517300-02
Chr02	irgsp1_rep	five_prime_UTR	18705710	18705867	.	+	.	Parent=Os02t0517300-02
Chr02	irgsp1_rep	CDS	18705868	18705937	.	+	0	Parent=Os02t0517300-02
Chr02	irgsp1_rep	CDS	18706289	18706455	.	+	2	Parent=Os02t0517300-02
Chr02	irgsp1_rep	CDS	18707786	18707842	.	+	0	Parent=Os02t0517300-02
Chr02	irgsp1_rep	CDS	18708595	18708664	.	+	0	Parent=Os02t0517300-02
Chr02	irgsp1_rep	CDS	18709242	18711325	.	+	2	Parent=Os02t0517300-02
Chr02	irgsp1_rep	three_prime_UTR	18711326	18711438	.	+	.	Parent=Os02t0517300-02
Chr02	irgsp1_rep	three_prime_UTR	18711612	18712350	.	+	.	Parent=Os02t0517300-02
Chr02	irgsp1_rep	mRNA	18714691	18717946	.	-	.	ID=Os02t0517333-01;Name=Os02t0517333-01;Locus_id=Os02g0517333;Note=Conserved hypothetical protein.;Transcript_evidence=AK105573 (DDBJ%2C Best hit);ORF_evidence=B8AIN2 (UniProt);NIAS_FLcDNA=001-128-D04;TENOR=Os02t0517333-01;KEGG=Os02t0517333-01
Chr02	irgsp1_rep	five_prime_UTR	18717351	18717946	.	-	.	Parent=Os02t0517333-01
Chr02	irgsp1_rep	CDS	18716892	18717350	.	-	0	Parent=Os02t0517333-01
Chr02	irgsp1_rep	three_prime_UTR	18716835	18716891	.	-	.	Parent=Os02t0517333-01
Chr02	irgsp1_rep	three_prime_UTR	18714691	18715126	.	-	.	Parent=Os02t0517333-01
Chr02	irgsp1_rep	mRNA	18716003	18717331	.	-	.	ID=Os02t0517333-02;Name=Os02t0517333-02;Locus_id=Os02g0517333;Note=Conserved hypothetical protein.;Transcript_evidence=AK111331 (DDBJ%2C Best hit);ORF_evidence=B8AIN2 (UniProt);NIAS_FLcDNA=002-181-E04;TENOR=Os02t0517333-02;KEGG=Os02t0517333-02
Chr02	irgsp1_rep	five_prime_UTR	18717312	18717331	.	-	.	Parent=Os02t0517333-02
Chr02	irgsp1_rep	CDS	18717021	18717311	.	-	0	Parent=Os02t0517333-02
Chr02	irgsp1_rep	CDS	18716848	18716916	.	-	0	Parent=Os02t0517333-02
Chr02	irgsp1_rep	three_prime_UTR	18716835	18716847	.	-	.	Parent=Os02t0517333-02
Chr02	irgsp1_rep	three_prime_UTR	18716003	18716228	.	-	.	Parent=Os02t0517333-02
Chr02	irgsp1_rep	mRNA	18714764	18715225	.	+	.	ID=Os02t0517366-00;Name=Os02t0517366-00;Locus_id=Os02g0517366;Note=Similar to Molybdenum cofactor synthesis protein 2B.;Transcript_evidence=tplb0006j17 (Wheat FLcDNA);ORF_evidence=Q6Z2X3 (UniProt);GO=Biological Process: Mo-molybdopterin cofactor biosynthetic process (GO:0006777);InterPro=Molybdopterin biosynthesis MoaE (IPR003448);TENOR=Os02t0517366-00;KEGG=Os02t0517366-00
Chr02	irgsp1_rep	CDS	18714764	18715225	.	+	0	Parent=Os02t0517366-00
Chr02	irgsp1_rep	mRNA	18736143	18736350	.	+	.	ID=Os02t0517421-01;Name=Os02t0517421-01;Locus_id=Os02g0517421;Note=Non-protein coding transcript.;Transcript_evidence=AK287742 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065147C19;TENOR=Os02t0517421-01
Chr02	irgsp1_rep	exon	18736143	18736350	.	+	.	Parent=Os02t0517421-01
Chr02	irgsp1_rep	mRNA	18769958	18777995	.	+	.	ID=Os02t0517531-01;Name=Os02t0517531-01;Locus_id=Os02g0517531;RAP-DB Gene Symbol Synonym(s)=OML4%2C LARGE1;RAP-DB Gene Name Synonym(s)=MEI2-LIKE PROTEIN 4;Note=MEI2-like protein%2C Regulation of grain size and weight;Transcript_evidence=AK121247;ORF_evidence=Q64M78;GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Nucleotide-binding alpha-beta plait domain superfamily (IPR012677),RNA-binding domain superfamily (IPR035979),RNA recognition motif domain (IPR000504),MEI2-like%2C RNA recognition motif 1 (IPR034453),Mei2/Mei2-like%2C C-terminal RNA recognition motif (IPR007201),MEI2-like%2C RNA recognition motif 3 (IPR034454);NIAS_FLcDNA=J023099P19;Manual Curation=April 21%2C 2020;Literature_PMID=32303659;TENOR=Os02t0517531-01;KEGG=Os02t0517531-01;Subcellular location=nucleus (GO:0005634)
Chr02	irgsp1_rep	five_prime_UTR	18769958	18770292	.	+	.	Parent=Os02t0517531-01
Chr02	irgsp1_rep	five_prime_UTR	18770862	18770862	.	+	.	Parent=Os02t0517531-01
Chr02	irgsp1_rep	CDS	18770863	18770964	.	+	0	Parent=Os02t0517531-01
Chr02	irgsp1_rep	CDS	18771209	18771254	.	+	0	Parent=Os02t0517531-01
Chr02	irgsp1_rep	CDS	18771796	18772116	.	+	2	Parent=Os02t0517531-01
Chr02	irgsp1_rep	CDS	18772607	18773025	.	+	2	Parent=Os02t0517531-01
Chr02	irgsp1_rep	CDS	18773111	18773269	.	+	0	Parent=Os02t0517531-01
Chr02	irgsp1_rep	CDS	18773405	18773521	.	+	0	Parent=Os02t0517531-01
Chr02	irgsp1_rep	CDS	18773588	18773736	.	+	0	Parent=Os02t0517531-01
Chr02	irgsp1_rep	CDS	18774335	18774432	.	+	1	Parent=Os02t0517531-01
Chr02	irgsp1_rep	CDS	18774512	18774964	.	+	2	Parent=Os02t0517531-01
Chr02	irgsp1_rep	CDS	18775267	18775921	.	+	2	Parent=Os02t0517531-01
Chr02	irgsp1_rep	CDS	18776020	18776104	.	+	1	Parent=Os02t0517531-01
Chr02	irgsp1_rep	CDS	18776202	18776270	.	+	0	Parent=Os02t0517531-01
Chr02	irgsp1_rep	CDS	18776518	18776697	.	+	0	Parent=Os02t0517531-01
Chr02	irgsp1_rep	CDS	18777210	18777362	.	+	0	Parent=Os02t0517531-01
Chr02	irgsp1_rep	three_prime_UTR	18777363	18777995	.	+	.	Parent=Os02t0517531-01
Chr02	irgsp1_rep	mRNA	18776582	18777819	.	+	.	ID=Os02t0517531-02;Name=Os02t0517531-02;Locus_id=Os02g0517531;CGSNL Gene Symbol=ML4;CGSNL Gene Name=MEI2-LIKE PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OML4%2C OsML4;Oryzabase Gene Name Synonym(s)=MEI2-LIKE PROTEIN4%2C LARGE1%2C LARGE 1;Note=Similar to Mei2-like protein.;Transcript_evidence=AK062177 (DDBJ%2C Best hit);ORF_evidence=Q64M78 (UniProt);NIAS_FLcDNA=001-046-D03;Oryzabase=23587;TENOR=Os02t0517531-02;KEGG=Os02t0517531-02
Chr02	irgsp1_rep	five_prime_UTR	18776582	18776583	.	+	.	Parent=Os02t0517531-02
Chr02	irgsp1_rep	CDS	18776584	18776697	.	+	0	Parent=Os02t0517531-02
Chr02	irgsp1_rep	CDS	18777210	18777362	.	+	0	Parent=Os02t0517531-02
Chr02	irgsp1_rep	three_prime_UTR	18777363	18777819	.	+	.	Parent=Os02t0517531-02
Chr02	irgsp1_rep	mRNA	18778609	18781514	.	-	.	ID=Os02t0517564-00;Name=Os02t0517564-00;Locus_id=Os02g0517564;Note=Similar to Ribose-phosphate pyrophosphokinase 1.;Transcript_evidence=AK361794 (DDBJ);ORF_evidence=D7LLM7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=UBX (IPR001012);TENOR=Os02t0517564-00;KEGG=Os02t0517564-00 (EC:2.7.6.1)
Chr02	irgsp1_rep	CDS	18781198	18781514	.	-	0	Parent=Os02t0517564-00
Chr02	irgsp1_rep	CDS	18778609	18779248	.	-	1	Parent=Os02t0517564-00
Chr02	irgsp1_rep	mRNA	18805498	18806589	.	-	.	ID=Os02t0517700-01;Name=Os02t0517700-01;Locus_id=Os02g0517700;Note=Conserved hypothetical protein.;Transcript_evidence=AK102148 (DDBJ%2C Best hit),AK107859 (DDBJ%2C Best hit);ORF_evidence=A2X5E1 (UniProt);NIAS_FLcDNA=J033086C12,002-134-B05;Expression=AK102148;TENOR=Os02t0517700-01;KEGG=Os02t0517700-01
Chr02	irgsp1_rep	five_prime_UTR	18806481	18806589	.	-	.	Parent=Os02t0517700-01
Chr02	irgsp1_rep	CDS	18805917	18806480	.	-	0	Parent=Os02t0517700-01
Chr02	irgsp1_rep	three_prime_UTR	18805498	18805916	.	-	.	Parent=Os02t0517700-01
Chr02	irgsp1_rep	mRNA	18811834	18812650	.	+	.	ID=Os02t0517750-00;Name=Os02t0517750-00;Locus_id=Os02g0517750;Note=Hypothetical gene.;Transcript_evidence=CT835458 (DDBJ%2C Best hit);ORF_evidence=B9F095 (UniProt);TENOR=Os02t0517750-00;KEGG=Os02t0517750-00
Chr02	irgsp1_rep	five_prime_UTR	18811834	18811896	.	+	.	Parent=Os02t0517750-00
Chr02	irgsp1_rep	CDS	18811897	18812123	.	+	0	Parent=Os02t0517750-00
Chr02	irgsp1_rep	CDS	18812226	18812466	.	+	1	Parent=Os02t0517750-00
Chr02	irgsp1_rep	three_prime_UTR	18812467	18812650	.	+	.	Parent=Os02t0517750-00
Chr02	irgsp1_rep	mRNA	18817869	18821399	.	-	.	ID=Os02t0517900-01;Name=Os02t0517900-01;Locus_id=Os02g0517900;Note=Aminotransferase-like%2C plant mobile domain domain containing protein.;Transcript_evidence=AK062274 (DDBJ%2C Best hit);ORF_evidence=B8AIN7 (UniProt);InterPro=Aminotransferase-like%2C plant mobile domain (IPR019557);NIAS_FLcDNA=001-100-B02;TENOR=Os02t0517900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	18821236	18821399	.	-	.	Parent=Os02t0517900-01
Chr02	irgsp1_rep	CDS	18821070	18821235	.	-	0	Parent=Os02t0517900-01
Chr02	irgsp1_rep	CDS	18820354	18820970	.	-	2	Parent=Os02t0517900-01
Chr02	irgsp1_rep	CDS	18820101	18820259	.	-	0	Parent=Os02t0517900-01
Chr02	irgsp1_rep	CDS	18819955	18820011	.	-	0	Parent=Os02t0517900-01
Chr02	irgsp1_rep	CDS	18819840	18819872	.	-	0	Parent=Os02t0517900-01
Chr02	irgsp1_rep	three_prime_UTR	18819611	18819839	.	-	.	Parent=Os02t0517900-01
Chr02	irgsp1_rep	three_prime_UTR	18819217	18819517	.	-	.	Parent=Os02t0517900-01
Chr02	irgsp1_rep	three_prime_UTR	18818945	18819143	.	-	.	Parent=Os02t0517900-01
Chr02	irgsp1_rep	three_prime_UTR	18818768	18818869	.	-	.	Parent=Os02t0517900-01
Chr02	irgsp1_rep	three_prime_UTR	18818421	18818676	.	-	.	Parent=Os02t0517900-01
Chr02	irgsp1_rep	three_prime_UTR	18817869	18818246	.	-	.	Parent=Os02t0517900-01
Chr02	irgsp1_rep	mRNA	18824564	18826074	.	-	.	ID=Os02t0518000-01;Name=Os02t0518000-01;Locus_id=Os02g0518000;Note=C2 calcium-dependent membrane targeting domain containing protein.;Transcript_evidence=AK068281 (DDBJ%2C Best hit);ORF_evidence=B8AIN8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973);NIAS_FLcDNA=J013146J12;Expression=AK068281;TENOR=Os02t0518000-01;KEGG=Os02t0518000-01
Chr02	irgsp1_rep	five_prime_UTR	18825994	18826074	.	-	.	Parent=Os02t0518000-01
Chr02	irgsp1_rep	CDS	18824962	18825993	.	-	0	Parent=Os02t0518000-01
Chr02	irgsp1_rep	three_prime_UTR	18824564	18824961	.	-	.	Parent=Os02t0518000-01
Chr02	irgsp1_rep	mRNA	18827027	18831745	.	-	.	ID=Os02t0518100-01;Name=Os02t0518100-01;Locus_id=Os02g0518100;Note=Protein of unknown function DUF803 family protein.;Transcript_evidence=AK103390 (DDBJ%2C Best hit);ORF_evidence=B8AIN9 (UniProt);InterPro=Protein of unknown function DUF803 (IPR008521);NIAS_FLcDNA=J033127K21;Expression=AK103390;TENOR=Os02t0518100-01;KEGG=Os02t0518100-01
Chr02	irgsp1_rep	five_prime_UTR	18831582	18831745	.	-	.	Parent=Os02t0518100-01
Chr02	irgsp1_rep	five_prime_UTR	18830637	18830824	.	-	.	Parent=Os02t0518100-01
Chr02	irgsp1_rep	CDS	18830544	18830636	.	-	0	Parent=Os02t0518100-01
Chr02	irgsp1_rep	CDS	18830061	18830148	.	-	0	Parent=Os02t0518100-01
Chr02	irgsp1_rep	CDS	18829904	18829965	.	-	2	Parent=Os02t0518100-01
Chr02	irgsp1_rep	CDS	18829455	18829540	.	-	0	Parent=Os02t0518100-01
Chr02	irgsp1_rep	CDS	18829277	18829350	.	-	1	Parent=Os02t0518100-01
Chr02	irgsp1_rep	CDS	18828706	18828808	.	-	2	Parent=Os02t0518100-01
Chr02	irgsp1_rep	CDS	18828497	18828625	.	-	1	Parent=Os02t0518100-01
Chr02	irgsp1_rep	CDS	18828288	18828387	.	-	1	Parent=Os02t0518100-01
Chr02	irgsp1_rep	CDS	18828060	18828179	.	-	0	Parent=Os02t0518100-01
Chr02	irgsp1_rep	CDS	18827882	18827972	.	-	0	Parent=Os02t0518100-01
Chr02	irgsp1_rep	CDS	18827758	18827800	.	-	2	Parent=Os02t0518100-01
Chr02	irgsp1_rep	CDS	18827557	18827656	.	-	1	Parent=Os02t0518100-01
Chr02	irgsp1_rep	CDS	18827315	18827476	.	-	0	Parent=Os02t0518100-01
Chr02	irgsp1_rep	three_prime_UTR	18827027	18827314	.	-	.	Parent=Os02t0518100-01
Chr02	irgsp1_rep	mRNA	18837800	18843471	.	+	.	ID=Os02t0518400-01;Name=Os02t0518400-01;Locus_id=Os02g0518400;Note=Hypothetical protein.;Transcript_evidence=AK069284 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023010F15;Expression=AK069284;TENOR=Os02t0518400-01;KEGG=Os02t0518400-01
Chr02	irgsp1_rep	five_prime_UTR	18837800	18838125	.	+	.	Parent=Os02t0518400-01
Chr02	irgsp1_rep	five_prime_UTR	18838254	18839316	.	+	.	Parent=Os02t0518400-01
Chr02	irgsp1_rep	five_prime_UTR	18839445	18839580	.	+	.	Parent=Os02t0518400-01
Chr02	irgsp1_rep	five_prime_UTR	18841898	18841982	.	+	.	Parent=Os02t0518400-01
Chr02	irgsp1_rep	five_prime_UTR	18842070	18842189	.	+	.	Parent=Os02t0518400-01
Chr02	irgsp1_rep	five_prime_UTR	18842261	18842934	.	+	.	Parent=Os02t0518400-01
Chr02	irgsp1_rep	five_prime_UTR	18843022	18843150	.	+	.	Parent=Os02t0518400-01
Chr02	irgsp1_rep	CDS	18843151	18843423	.	+	0	Parent=Os02t0518400-01
Chr02	irgsp1_rep	three_prime_UTR	18843424	18843471	.	+	.	Parent=Os02t0518400-01
Chr02	irgsp1_rep	mRNA	18839194	18842419	.	-	.	ID=Os02t0518500-00;Name=Os02t0518500-00;Locus_id=Os02g0518500;CGSNL Gene Symbol=IDD7;CGSNL Gene Name=INDETERMINATE DOMAIN 7;Oryzabase Gene Symbol Synonym(s)=OsIDD7;Oryzabase Gene Name Synonym(s)=indeterminate domain 7;Note=Similar to Zinc finger%2C C2H2-type.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2HVE6 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880);Oryzabase=13155;TENOR=Os02t0518500-00
Chr02	irgsp1_rep	CDS	18842281	18842419	.	-	0	Parent=Os02t0518500-00
Chr02	irgsp1_rep	CDS	18841041	18841437	.	-	2	Parent=Os02t0518500-00
Chr02	irgsp1_rep	CDS	18839194	18840136	.	-	1	Parent=Os02t0518500-00
Chr02	irgsp1_rep	mRNA	18841145	18841440	.	+	.	ID=Os02t0518550-00;Name=Os02t0518550-00;Locus_id=Os02g0518550;Note=Non-protein coding transcript.;Transcript_evidence=BT086922 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0518550-00
Chr02	irgsp1_rep	exon	18841145	18841440	.	+	.	Parent=Os02t0518550-00
Chr02	irgsp1_rep	mRNA	18845552	18851842	.	-	.	ID=Os02t0518600-01;Name=Os02t0518600-01;Locus_id=Os02g0518600;CGSNL Gene Symbol=HAK19;CGSNL Gene Name=HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 19;Oryzabase Gene Symbol Synonym(s)=OsHAK19;Oryzabase Gene Name Synonym(s)=High-affinity Potassium(K+) Transporter 19%2C Potassium transporter 19;Note=Similar to Potassium transporter 1 (OsHAK1). Splice isoform 2.;Transcript_evidence=AK106353 (DDBJ%2C Best hit);ORF_evidence=Q6H4M2 (UniProt);GO=Biological Process: potassium ion transmembrane transport (GO:0071805),Cellular Component: membrane (GO:0016020),Molecular Function: potassium ion transmembrane transporter activity (GO:0015079);InterPro=K+ potassium transporter (IPR003855);NIAS_FLcDNA=002-102-A02;Oryzabase=8673;Expression=AK106353;TENOR=Os02t0518600-01;KEGG=Os02t0518600-01
Chr02	irgsp1_rep	five_prime_UTR	18851698	18851842	.	-	.	Parent=Os02t0518600-01
Chr02	irgsp1_rep	five_prime_UTR	18848679	18848743	.	-	.	Parent=Os02t0518600-01
Chr02	irgsp1_rep	CDS	18848565	18848678	.	-	0	Parent=Os02t0518600-01
Chr02	irgsp1_rep	CDS	18848241	18848463	.	-	0	Parent=Os02t0518600-01
Chr02	irgsp1_rep	CDS	18847862	18848110	.	-	2	Parent=Os02t0518600-01
Chr02	irgsp1_rep	CDS	18847707	18847757	.	-	2	Parent=Os02t0518600-01
Chr02	irgsp1_rep	CDS	18847310	18847570	.	-	2	Parent=Os02t0518600-01
Chr02	irgsp1_rep	CDS	18847162	18847214	.	-	2	Parent=Os02t0518600-01
Chr02	irgsp1_rep	CDS	18846964	18847078	.	-	0	Parent=Os02t0518600-01
Chr02	irgsp1_rep	CDS	18845694	18846856	.	-	2	Parent=Os02t0518600-01
Chr02	irgsp1_rep	three_prime_UTR	18845552	18845693	.	-	.	Parent=Os02t0518600-01
Chr02	irgsp1_rep	mRNA	18859263	18862559	.	+	.	ID=Os02t0518800-01;Name=Os02t0518800-01;Locus_id=Os02g0518800;Note=Conserved hypothetical protein.;Transcript_evidence=AK100913 (DDBJ%2C Best hit);ORF_evidence=B8A8B5 (UniProt);NIAS_FLcDNA=J023133A14;TENOR=Os02t0518800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	18859263	18859296	.	+	.	Parent=Os02t0518800-01
Chr02	irgsp1_rep	CDS	18859297	18859431	.	+	0	Parent=Os02t0518800-01
Chr02	irgsp1_rep	CDS	18859538	18859831	.	+	0	Parent=Os02t0518800-01
Chr02	irgsp1_rep	three_prime_UTR	18859832	18859961	.	+	.	Parent=Os02t0518800-01
Chr02	irgsp1_rep	three_prime_UTR	18860067	18862559	.	+	.	Parent=Os02t0518800-01
Chr02	irgsp1_rep	mRNA	18867075	18869820	.	+	.	ID=Os02t0518950-01;Name=Os02t0518950-01;Locus_id=Os02g0518950;Note=Conserved hypothetical protein.;Transcript_evidence=AK288940 (DDBJ%2C Best hit);ORF_evidence=Q7XXJ2 (UniProt);NIAS_FLcDNA=J090083A19;TENOR=Os02t0518950-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	18867075	18869161	.	+	.	Parent=Os02t0518950-01
Chr02	irgsp1_rep	CDS	18869162	18869395	.	+	0	Parent=Os02t0518950-01
Chr02	irgsp1_rep	three_prime_UTR	18869396	18869820	.	+	.	Parent=Os02t0518950-01
Chr02	irgsp1_rep	mRNA	18872288	18878500	.	-	.	ID=Os02t0519100-01;Name=Os02t0519100-01;Locus_id=Os02g0519100;CGSNL Gene Symbol=HAK20;CGSNL Gene Name=HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 20;Oryzabase Gene Symbol Synonym(s)=OsHAK20;Oryzabase Gene Name Synonym(s)=High-affinity Potassium(K+) Transporter 20%2C Potassium transporter 20;Note=Similar to Potassium transporter 1 (OsHAK1). Splice isoform 2.;Transcript_evidence=AK119325 (DDBJ%2C Best hit);ORF_evidence=Q6H4L9 (UniProt);GO=Biological Process: potassium ion transmembrane transport (GO:0071805),Cellular Component: membrane (GO:0016020),Molecular Function: potassium ion transmembrane transporter activity (GO:0015079);InterPro=K+ potassium transporter (IPR003855);NIAS_FLcDNA=001-131-A11;Oryzabase=8674;Expression=AK119325;TENOR=Os02t0519100-01;KEGG=Os02t0519100-01
Chr02	irgsp1_rep	five_prime_UTR	18878441	18878500	.	-	.	Parent=Os02t0519100-01
Chr02	irgsp1_rep	five_prime_UTR	18878095	18878349	.	-	.	Parent=Os02t0519100-01
Chr02	irgsp1_rep	CDS	18877978	18878094	.	-	0	Parent=Os02t0519100-01
Chr02	irgsp1_rep	CDS	18877653	18877875	.	-	0	Parent=Os02t0519100-01
Chr02	irgsp1_rep	CDS	18877236	18877484	.	-	2	Parent=Os02t0519100-01
Chr02	irgsp1_rep	CDS	18877058	18877108	.	-	2	Parent=Os02t0519100-01
Chr02	irgsp1_rep	CDS	18874160	18874420	.	-	2	Parent=Os02t0519100-01
Chr02	irgsp1_rep	CDS	18874032	18874084	.	-	2	Parent=Os02t0519100-01
Chr02	irgsp1_rep	CDS	18873816	18873930	.	-	0	Parent=Os02t0519100-01
Chr02	irgsp1_rep	CDS	18872524	18873698	.	-	2	Parent=Os02t0519100-01
Chr02	irgsp1_rep	three_prime_UTR	18872288	18872523	.	-	.	Parent=Os02t0519100-01
Chr02	irgsp1_rep	mRNA	18889983	18896996	.	-	.	ID=Os02t0519300-01;Name=Os02t0519300-01;Locus_id=Os02g0519300;Note=Similar to H0112G12.10 protein.;Transcript_evidence=AK072024 (DDBJ%2C Best hit);ORF_evidence=Q01JL0 (UniProt);NIAS_FLcDNA=J013100E02;TENOR=Os02t0519300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	18896883	18896996	.	-	.	Parent=Os02t0519300-01
Chr02	irgsp1_rep	CDS	18896742	18896882	.	-	0	Parent=Os02t0519300-01
Chr02	irgsp1_rep	CDS	18895334	18895372	.	-	0	Parent=Os02t0519300-01
Chr02	irgsp1_rep	CDS	18895123	18895176	.	-	0	Parent=Os02t0519300-01
Chr02	irgsp1_rep	CDS	18894963	18895026	.	-	0	Parent=Os02t0519300-01
Chr02	irgsp1_rep	CDS	18894661	18894719	.	-	2	Parent=Os02t0519300-01
Chr02	irgsp1_rep	CDS	18894073	18894197	.	-	0	Parent=Os02t0519300-01
Chr02	irgsp1_rep	CDS	18893872	18893931	.	-	1	Parent=Os02t0519300-01
Chr02	irgsp1_rep	CDS	18893621	18893679	.	-	1	Parent=Os02t0519300-01
Chr02	irgsp1_rep	CDS	18892714	18892787	.	-	2	Parent=Os02t0519300-01
Chr02	irgsp1_rep	CDS	18891234	18891320	.	-	0	Parent=Os02t0519300-01
Chr02	irgsp1_rep	three_prime_UTR	18891139	18891233	.	-	.	Parent=Os02t0519300-01
Chr02	irgsp1_rep	three_prime_UTR	18890980	18891027	.	-	.	Parent=Os02t0519300-01
Chr02	irgsp1_rep	three_prime_UTR	18890761	18890889	.	-	.	Parent=Os02t0519300-01
Chr02	irgsp1_rep	three_prime_UTR	18889983	18890663	.	-	.	Parent=Os02t0519300-01
Chr02	irgsp1_rep	mRNA	18889930	18892036	.	-	.	ID=Os02t0519300-02;Name=Os02t0519300-02;Locus_id=Os02g0519300;Note=Similar to H0112G12.10 protein.;Transcript_evidence=AK064445 (DDBJ%2C Best hit);ORF_evidence=Q01JL0 (UniProt);NIAS_FLcDNA=002-110-E12;TENOR=Os02t0519300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	18891366	18892036	.	-	.	Parent=Os02t0519300-02
Chr02	irgsp1_rep	CDS	18891282	18891365	.	-	0	Parent=Os02t0519300-02
Chr02	irgsp1_rep	CDS	18891139	18891201	.	-	0	Parent=Os02t0519300-02
Chr02	irgsp1_rep	CDS	18890980	18891027	.	-	0	Parent=Os02t0519300-02
Chr02	irgsp1_rep	CDS	18890761	18890889	.	-	0	Parent=Os02t0519300-02
Chr02	irgsp1_rep	CDS	18890616	18890663	.	-	0	Parent=Os02t0519300-02
Chr02	irgsp1_rep	three_prime_UTR	18889930	18890615	.	-	.	Parent=Os02t0519300-02
Chr02	irgsp1_rep	mRNA	18902614	18903187	.	-	.	ID=Os02t0519401-00;Name=Os02t0519401-00;Locus_id=Os02g0519401;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Similar to POT family protein.;Transcript_evidence=AK374743 (DDBJ);ORF_evidence=NP_001147599.1 (RefSeq);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109);Oryzabase=23643;TENOR=Os02t0519401-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	18902929	18903187	.	-	.	Parent=Os02t0519401-00
Chr02	irgsp1_rep	CDS	18902614	18902928	.	-	0	Parent=Os02t0519401-00
Chr02	irgsp1_rep	mRNA	18908878	18909479	.	+	.	ID=Os02t0519700-01;Name=Os02t0519700-01;Locus_id=Os02g0519700;Note=Conserved hypothetical protein.;Transcript_evidence=AK243666 (DDBJ%2C Best hit);ORF_evidence=NP_001172991.1 (RefSeq);NIAS_FLcDNA=J100089J18;TENOR=Os02t0519700-01;KEGG=Os02t0519700-01
Chr02	irgsp1_rep	five_prime_UTR	18908878	18908916	.	+	.	Parent=Os02t0519700-01
Chr02	irgsp1_rep	CDS	18908917	18909291	.	+	0	Parent=Os02t0519700-01
Chr02	irgsp1_rep	three_prime_UTR	18909292	18909479	.	+	.	Parent=Os02t0519700-01
Chr02	irgsp1_rep	mRNA	18916988	18921785	.	+	.	ID=Os02t0519900-01;Name=Os02t0519900-01;Locus_id=Os02g0519900;Oryzabase Gene Name Synonym(s)=elongation factor 2;Note=Similar to Elongation factor EF-2 (Fragment).;Transcript_evidence=AK100313 (DDBJ%2C Best hit);ORF_evidence=Q01MK8 (UniProt);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Translation elongation factor EFG/EF2%2C C-terminal (IPR000640),Protein synthesis factor%2C GTP-binding (IPR000795),Translation elongation factor EFTu/EF1A%2C domain 2 (IPR004161),Small GTP-binding protein domain (IPR005225),Translation elongation factor EFG/EF2%2C domain IV (IPR005517),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Elongation factor G/III/V (IPR009022),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=J023078M04;Oryzabase=14452;Expression=AK100313;TENOR=Os02t0519900-01;KEGG=Os02t0519900-01 (EC:3.6.5.3)
Chr02	irgsp1_rep	five_prime_UTR	18916988	18917105	.	+	.	Parent=Os02t0519900-01
Chr02	irgsp1_rep	five_prime_UTR	18918342	18918380	.	+	.	Parent=Os02t0519900-01
Chr02	irgsp1_rep	CDS	18918381	18918471	.	+	0	Parent=Os02t0519900-01
Chr02	irgsp1_rep	CDS	18919112	18921552	.	+	2	Parent=Os02t0519900-01
Chr02	irgsp1_rep	three_prime_UTR	18921553	18921785	.	+	.	Parent=Os02t0519900-01
Chr02	irgsp1_rep	mRNA	18919833	18921778	.	+	.	ID=Os02t0519900-02;Name=Os02t0519900-02;Locus_id=Os02g0519900;Oryzabase Gene Name Synonym(s)=elongation factor 2;Note=Similar to H0613H07.5 protein.;Transcript_evidence=AK121453 (DDBJ%2C Best hit);ORF_evidence=Q01MK8 (UniProt);GO=Molecular Function: GTP binding (GO:0005525);InterPro=Translation elongation factor EFG/EF2%2C C-terminal (IPR000640),Translation elongation factor EFTu/EF1A%2C domain 2 (IPR004161),Translation elongation factor EFG/EF2%2C domain IV (IPR005517),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Elongation factor G/III/V (IPR009022),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=J023142O06;Oryzabase=14452;Expression=AK121453;TENOR=Os02t0519900-02;KEGG=Os02t0519900-02 (EC:3.6.5.3)
Chr02	irgsp1_rep	five_prime_UTR	18919833	18919833	.	+	.	Parent=Os02t0519900-02
Chr02	irgsp1_rep	CDS	18919834	18921552	.	+	0	Parent=Os02t0519900-02
Chr02	irgsp1_rep	three_prime_UTR	18921553	18921778	.	+	.	Parent=Os02t0519900-02
Chr02	irgsp1_rep	mRNA	18920484	18921781	.	+	.	ID=Os02t0519900-03;Name=Os02t0519900-03;Locus_id=Os02g0519900;Oryzabase Gene Name Synonym(s)=elongation factor 2;Note=Similar to H0613H07.5 protein.;Transcript_evidence=AK068869 (DDBJ%2C Best hit);ORF_evidence=Q01MK8 (UniProt);GO=Molecular Function: GTP binding (GO:0005525);InterPro=Translation elongation factor EFG/EF2%2C C-terminal (IPR000640),Translation elongation factor EFG/EF2%2C domain IV (IPR005517),Elongation factor G/III/V (IPR009022),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=J023002E06;Oryzabase=14452;Expression=AK068869;TENOR=Os02t0519900-03;KEGG=Os02t0519900-03 (EC:3.6.5.3)
Chr02	irgsp1_rep	five_prime_UTR	18920484	18920484	.	+	.	Parent=Os02t0519900-03
Chr02	irgsp1_rep	CDS	18920485	18921552	.	+	0	Parent=Os02t0519900-03
Chr02	irgsp1_rep	three_prime_UTR	18921553	18921781	.	+	.	Parent=Os02t0519900-03
Chr02	irgsp1_rep	mRNA	18920613	18921783	.	+	.	ID=Os02t0519900-04;Name=Os02t0519900-04;Locus_id=Os02g0519900;Oryzabase Gene Name Synonym(s)=elongation factor 2;Note=Similar to H0613H07.5 protein.;Transcript_evidence=AK060953 (DDBJ%2C Best hit);ORF_evidence=Q01MK8 (UniProt);GO=Molecular Function: GTP binding (GO:0005525);InterPro=Translation elongation factor EFG/EF2%2C C-terminal (IPR000640),Translation elongation factor EFG/EF2%2C domain IV (IPR005517),Elongation factor G/III/V (IPR009022),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=006-201-G04;Oryzabase=14452;Expression=AK060953;TENOR=Os02t0519900-04;KEGG=Os02t0519900-04 (EC:3.6.5.3)
Chr02	irgsp1_rep	five_prime_UTR	18920613	18920613	.	+	.	Parent=Os02t0519900-04
Chr02	irgsp1_rep	CDS	18920614	18921552	.	+	0	Parent=Os02t0519900-04
Chr02	irgsp1_rep	three_prime_UTR	18921553	18921783	.	+	.	Parent=Os02t0519900-04
Chr02	irgsp1_rep	mRNA	18920863	18921778	.	+	.	ID=Os02t0519900-05;Name=Os02t0519900-05;Locus_id=Os02g0519900;Oryzabase Gene Name Synonym(s)=elongation factor 2;Note=Similar to H0613H07.5 protein.;Transcript_evidence=AK099493 (DDBJ%2C Best hit);ORF_evidence=Q01MK8 (UniProt);GO=Molecular Function: GTP binding (GO:0005525);InterPro=Translation elongation factor EFG/EF2%2C C-terminal (IPR000640),Translation elongation factor EFG/EF2%2C domain IV (IPR005517),Elongation factor G/III/V (IPR009022),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=J013027E04;Oryzabase=14452;Expression=AK099493;TENOR=Os02t0519900-05;KEGG=Os02t0519900-05 (EC:3.6.5.3)
Chr02	irgsp1_rep	CDS	18920863	18921552	.	+	0	Parent=Os02t0519900-05
Chr02	irgsp1_rep	three_prime_UTR	18921553	18921778	.	+	.	Parent=Os02t0519900-05
Chr02	irgsp1_rep	mRNA	18918349	18921748	.	-	.	ID=Os02t0519950-00;Name=Os02t0519950-00;Locus_id=Os02g0519950;Note=Hypothetical protein.;Transcript_evidence=tplb0056i14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0519950-00
Chr02	irgsp1_rep	five_prime_UTR	18919669	18921748	.	-	.	Parent=Os02t0519950-00
Chr02	irgsp1_rep	CDS	18919333	18919668	.	-	0	Parent=Os02t0519950-00
Chr02	irgsp1_rep	three_prime_UTR	18919092	18919332	.	-	.	Parent=Os02t0519950-00
Chr02	irgsp1_rep	three_prime_UTR	18918349	18918456	.	-	.	Parent=Os02t0519950-00
Chr02	irgsp1_rep	mRNA	18923492	18924344	.	-	.	ID=Os02t0520000-00;Name=Os02t0520000-00;Locus_id=Os02g0520000;CGSNL Gene Symbol=ERF81;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 81;Oryzabase Gene Symbol Synonym(s)=OsERF#081%2C OsERF081%2C OsERF81%2C AP2/EREBP#014%2C AP2/EREBP14;Oryzabase Gene Name Synonym(s)=ethylene response factor 81%2C APETALA2/ethylene-responsive element binding protein 14;Note=Similar to OSIGBa0113L04.1 protein.;Transcript_evidence=EU974106 (DDBJ);ORF_evidence=NP_001152173.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);Oryzabase=10588;TENOR=Os02t0520000-00;KEGG=Os02t0520000-00
Chr02	irgsp1_rep	five_prime_UTR	18924342	18924344	.	-	.	Parent=Os02t0520000-00
Chr02	irgsp1_rep	CDS	18923622	18924341	.	-	0	Parent=Os02t0520000-00
Chr02	irgsp1_rep	three_prime_UTR	18923492	18923621	.	-	.	Parent=Os02t0520000-00
Chr02	irgsp1_rep	mRNA	18936409	18939517	.	-	.	ID=Os02t0520100-01;Name=Os02t0520100-01;Locus_id=Os02g0520100;Oryzabase Gene Symbol Synonym(s)=OsSTA61;Note=NUDIX hydrolase domain containing protein.;Transcript_evidence=AK072610 (DDBJ%2C Best hit);ORF_evidence=NP_001151118.1 (RefSeq);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=NUDIX hydrolase domain (IPR000086),NUDIX hydrolase domain-like (IPR015797),NUDIX hydrolase%2C conserved site (IPR020084);NIAS_FLcDNA=J023132J05;Oryzabase=19364;Expression=AK072610;TENOR=Os02t0520100-01;KEGG=Os02t0520100-01
Chr02	irgsp1_rep	five_prime_UTR	18939298	18939517	.	-	.	Parent=Os02t0520100-01
Chr02	irgsp1_rep	five_prime_UTR	18939212	18939217	.	-	.	Parent=Os02t0520100-01
Chr02	irgsp1_rep	CDS	18939132	18939211	.	-	0	Parent=Os02t0520100-01
Chr02	irgsp1_rep	CDS	18938890	18939010	.	-	1	Parent=Os02t0520100-01
Chr02	irgsp1_rep	CDS	18938541	18938624	.	-	0	Parent=Os02t0520100-01
Chr02	irgsp1_rep	CDS	18937198	18937347	.	-	0	Parent=Os02t0520100-01
Chr02	irgsp1_rep	CDS	18936889	18937068	.	-	0	Parent=Os02t0520100-01
Chr02	irgsp1_rep	three_prime_UTR	18936409	18936888	.	-	.	Parent=Os02t0520100-01
Chr02	irgsp1_rep	mRNA	18956519	18957132	.	+	.	ID=Os02t0520500-01;Name=Os02t0520500-01;Locus_id=Os02g0520500;Note=Conserved hypothetical protein.;Transcript_evidence=AK107896 (DDBJ%2C Best hit);ORF_evidence=Q6H4N2 (UniProt);NIAS_FLcDNA=002-134-F03;Expression=AK107896;TENOR=Os02t0520500-01;KEGG=Os02t0520500-01
Chr02	irgsp1_rep	five_prime_UTR	18956519	18956598	.	+	.	Parent=Os02t0520500-01
Chr02	irgsp1_rep	CDS	18956599	18956685	.	+	0	Parent=Os02t0520500-01
Chr02	irgsp1_rep	CDS	18956692	18957015	.	+	0	Parent=Os02t0520500-01
Chr02	irgsp1_rep	three_prime_UTR	18957016	18957132	.	+	.	Parent=Os02t0520500-01
Chr02	irgsp1_rep	mRNA	18972894	18976337	.	-	.	ID=Os02t0520750-01;Name=Os02t0520750-01;Locus_id=Os02g0520750;Note=Similar to H0209H04.3 protein.;Transcript_evidence=AK242816 (DDBJ%2C Best hit);ORF_evidence=Q01L35 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);NIAS_FLcDNA=J090063A15;TENOR=Os02t0520750-01;KEGG=Os02t0520750-01
Chr02	irgsp1_rep	five_prime_UTR	18976211	18976337	.	-	.	Parent=Os02t0520750-01
Chr02	irgsp1_rep	CDS	18976054	18976210	.	-	0	Parent=Os02t0520750-01
Chr02	irgsp1_rep	CDS	18974142	18974530	.	-	2	Parent=Os02t0520750-01
Chr02	irgsp1_rep	CDS	18973726	18973967	.	-	0	Parent=Os02t0520750-01
Chr02	irgsp1_rep	CDS	18973124	18973640	.	-	1	Parent=Os02t0520750-01
Chr02	irgsp1_rep	three_prime_UTR	18972894	18973123	.	-	.	Parent=Os02t0520750-01
Chr02	irgsp1_rep	mRNA	18980950	18984192	.	-	.	ID=Os02t0520800-01;Name=Os02t0520800-01;Locus_id=Os02g0520800;Note=Similar to Ubiquinol-cytoChrome c reductase iron-sulfur subunit%2C mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP).;Transcript_evidence=AK102815 (DDBJ%2C Best hit);ORF_evidence=A2X5F8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: membrane (GO:0016020),Molecular Function: ubiquinol-cytoChrome-c reductase activity (GO:0008121),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on diphenols and related substances as donors (GO:0016679),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=Ubiquinol cytoChrome reductase%2C transmembrane domain (IPR004192),Rieske iron-sulphur protein%2C C-terminal (IPR005805),Ubiquinol-cytoChrome c reductase%2C iron-sulphur subunit (IPR006317),Rieske iron-sulphur protein (IPR014349),Rieske [2Fe-2S] iron-sulphur domain (IPR017941);NIAS_FLcDNA=J033108M09;Expression=AK102815;TENOR=Os02t0520800-01;KEGG=Os02t0520800-01 (EC:1.10.2.2)
Chr02	irgsp1_rep	five_prime_UTR	18984104	18984192	.	-	.	Parent=Os02t0520800-01
Chr02	irgsp1_rep	CDS	18983929	18984103	.	-	0	Parent=Os02t0520800-01
Chr02	irgsp1_rep	CDS	18981198	18981841	.	-	2	Parent=Os02t0520800-01
Chr02	irgsp1_rep	three_prime_UTR	18980950	18981197	.	-	.	Parent=Os02t0520800-01
Chr02	irgsp1_rep	mRNA	18986685	18987266	.	-	.	ID=Os02t0521100-01;Name=Os02t0521100-01;Locus_id=Os02g0521100;CGSNL Gene Symbol=ERF107;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 107;Oryzabase Gene Symbol Synonym(s)=OsERF#107%2C OsERF107%2C AP2/EREBP#015%2C AP2/EREBP15;Oryzabase Gene Name Synonym(s)=ethylene response factor 107%2C APETALA2/ethylene-responsive element binding protein 15;Note=Hypothetical conserved gene.;Transcript_evidence=AK109226 (DDBJ%2C Best hit);ORF_evidence=A2X5G0 (UniProt);NIAS_FLcDNA=002-156-E10;Oryzabase=10604;Expression=AK109226;TENOR=Os02t0521100-01;KEGG=Os02t0521100-01
Chr02	irgsp1_rep	five_prime_UTR	18987265	18987266	.	-	.	Parent=Os02t0521100-01
Chr02	irgsp1_rep	CDS	18987100	18987264	.	-	0	Parent=Os02t0521100-01
Chr02	irgsp1_rep	three_prime_UTR	18986685	18987099	.	-	.	Parent=Os02t0521100-01
Chr02	irgsp1_rep	mRNA	18994018	19001080	.	-	.	ID=Os02t0521300-01;Name=Os02t0521300-01;Locus_id=Os02g0521300;RAP-DB Gene Symbol Synonym(s)=OsBON1;RAP-DB Gene Name Synonym(s)=BONZAI 1;CGSNL Gene Symbol=BON1;CGSNL Gene Name=BONZAI 1;Oryzabase Gene Symbol Synonym(s)=OsBON1;Note=Copine protein%2C Negative regulation of disease resistance%2C Positive regulation of plant growth and development;Transcript_evidence=AK120851;ORF_evidence=Q6H563;InterPro=C2 domain superfamily (IPR035892),von Willebrand factor A-like domain superfamily (IPR036465),C2 domain (IPR000008),Copine%2C C2B domain (IPR037768),von Willebrand factor%2C type A (IPR002035),Copine (IPR010734);NIAS_FLcDNA=J023023M23;Manual Curation=October 19%2C 2018;Literature_PMID=29356349;Oryzabase=22263;Expression=AK120851;TENOR=Os02t0521300-01;KEGG=Os02t0521300-01;Subcellular location=plasma membrane (GO:0005886)
Chr02	irgsp1_rep	five_prime_UTR	19000833	19001080	.	-	.	Parent=Os02t0521300-01
Chr02	irgsp1_rep	CDS	19000668	19000832	.	-	0	Parent=Os02t0521300-01
Chr02	irgsp1_rep	CDS	18999810	18999857	.	-	0	Parent=Os02t0521300-01
Chr02	irgsp1_rep	CDS	18998590	18998738	.	-	0	Parent=Os02t0521300-01
Chr02	irgsp1_rep	CDS	18998455	18998503	.	-	1	Parent=Os02t0521300-01
Chr02	irgsp1_rep	CDS	18997966	18998022	.	-	0	Parent=Os02t0521300-01
Chr02	irgsp1_rep	CDS	18997235	18997417	.	-	0	Parent=Os02t0521300-01
Chr02	irgsp1_rep	CDS	18996944	18997079	.	-	0	Parent=Os02t0521300-01
Chr02	irgsp1_rep	CDS	18996789	18996849	.	-	2	Parent=Os02t0521300-01
Chr02	irgsp1_rep	CDS	18996363	18996468	.	-	1	Parent=Os02t0521300-01
Chr02	irgsp1_rep	CDS	18996179	18996293	.	-	0	Parent=Os02t0521300-01
Chr02	irgsp1_rep	CDS	18996009	18996085	.	-	2	Parent=Os02t0521300-01
Chr02	irgsp1_rep	CDS	18995776	18995913	.	-	0	Parent=Os02t0521300-01
Chr02	irgsp1_rep	CDS	18995366	18995530	.	-	0	Parent=Os02t0521300-01
Chr02	irgsp1_rep	CDS	18995167	18995280	.	-	0	Parent=Os02t0521300-01
Chr02	irgsp1_rep	CDS	18994826	18994922	.	-	0	Parent=Os02t0521300-01
Chr02	irgsp1_rep	CDS	18994640	18994734	.	-	2	Parent=Os02t0521300-01
Chr02	irgsp1_rep	three_prime_UTR	18994018	18994639	.	-	.	Parent=Os02t0521300-01
Chr02	irgsp1_rep	mRNA	19001980	19004365	.	+	.	ID=Os02t0521366-00;Name=Os02t0521366-00;Locus_id=Os02g0521366;Note=Similar to HAT family dimerisation domain containing protein.;Transcript_evidence=tplb0053n06 (Wheat FLcDNA);ORF_evidence=Q7XE06 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Zinc finger%2C BED-type predicted (IPR003656),HAT dimerisation (IPR008906),Ribonuclease H-like (IPR012337);TENOR=Os02t0521366-00
Chr02	irgsp1_rep	CDS	19001980	19002695	.	+	0	Parent=Os02t0521366-00
Chr02	irgsp1_rep	CDS	19002793	19004365	.	+	1	Parent=Os02t0521366-00
Chr02	irgsp1_rep	mRNA	19002100	19004089	.	-	.	ID=Os02t0521432-00;Name=Os02t0521432-00;Locus_id=Os02g0521432;Note=Hypothetical protein.;Transcript_evidence=tplb0030l08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0521432-00
Chr02	irgsp1_rep	five_prime_UTR	19003069	19004089	.	-	.	Parent=Os02t0521432-00
Chr02	irgsp1_rep	CDS	19002844	19003068	.	-	0	Parent=Os02t0521432-00
Chr02	irgsp1_rep	three_prime_UTR	19002807	19002843	.	-	.	Parent=Os02t0521432-00
Chr02	irgsp1_rep	three_prime_UTR	19002100	19002711	.	-	.	Parent=Os02t0521432-00
Chr02	irgsp1_rep	mRNA	19011509	19012299	.	+	.	ID=Os02t0521500-00;Name=Os02t0521500-00;Locus_id=Os02g0521500;Note=Peptidase C65%2C otubain domain containing protein.;Transcript_evidence=AK335298 (DDBJ);ORF_evidence=B9F0A6 (UniProt);InterPro=Peptidase C65%2C otubain (IPR019400);TENOR=Os02t0521500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	19011509	19011516	.	+	.	Parent=Os02t0521500-00
Chr02	irgsp1_rep	CDS	19011517	19011614	.	+	0	Parent=Os02t0521500-00
Chr02	irgsp1_rep	CDS	19011697	19011749	.	+	1	Parent=Os02t0521500-00
Chr02	irgsp1_rep	CDS	19011824	19011927	.	+	2	Parent=Os02t0521500-00
Chr02	irgsp1_rep	CDS	19012039	19012299	.	+	0	Parent=Os02t0521500-00
Chr02	irgsp1_rep	mRNA	19018861	19020302	.	+	.	ID=Os02t0521600-00;Name=Os02t0521600-00;Locus_id=Os02g0521600;Note=Ovarian tumour%2C otubain domain containing protein.;Transcript_evidence=AK362134 (DDBJ);ORF_evidence=B9F0A7 (UniProt);InterPro=Ovarian tumour%2C otubain (IPR003323),Peptidase C65%2C otubain (IPR019400);TENOR=Os02t0521600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	19018861	19019049	.	+	0	Parent=Os02t0521600-00
Chr02	irgsp1_rep	CDS	19019134	19019241	.	+	0	Parent=Os02t0521600-00
Chr02	irgsp1_rep	CDS	19019540	19019610	.	+	0	Parent=Os02t0521600-00
Chr02	irgsp1_rep	CDS	19019707	19019753	.	+	1	Parent=Os02t0521600-00
Chr02	irgsp1_rep	CDS	19019829	19019932	.	+	2	Parent=Os02t0521600-00
Chr02	irgsp1_rep	CDS	19020030	19020302	.	+	0	Parent=Os02t0521600-00
Chr02	irgsp1_rep	mRNA	19021694	19024719	.	+	.	ID=Os02t0521700-01;Name=Os02t0521700-01;Locus_id=Os02g0521700;Note=Similar to Thioesterase family protein.;Transcript_evidence=AK068649 (DDBJ%2C Best hit),AK063046 (DDBJ%2C Best hit);ORF_evidence=B6T2R6 (UniProt);NIAS_FLcDNA=J013158I20,001-110-D11;TENOR=Os02t0521700-01
Chr02	irgsp1_rep	five_prime_UTR	19021694	19021712	.	+	.	Parent=Os02t0521700-01
Chr02	irgsp1_rep	CDS	19021713	19021940	.	+	0	Parent=Os02t0521700-01
Chr02	irgsp1_rep	CDS	19022019	19022339	.	+	0	Parent=Os02t0521700-01
Chr02	irgsp1_rep	three_prime_UTR	19022340	19024719	.	+	.	Parent=Os02t0521700-01
Chr02	irgsp1_rep	mRNA	19026415	19026865	.	+	.	ID=Os02t0521800-01;Name=Os02t0521800-01;Locus_id=Os02g0521800;Note=Hypothetical protein.;Transcript_evidence=AK107767 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-133-B03;Expression=AK107767;TENOR=Os02t0521800-01;KEGG=Os02t0521800-01
Chr02	irgsp1_rep	five_prime_UTR	19026415	19026515	.	+	.	Parent=Os02t0521800-01
Chr02	irgsp1_rep	CDS	19026516	19026836	.	+	0	Parent=Os02t0521800-01
Chr02	irgsp1_rep	three_prime_UTR	19026837	19026865	.	+	.	Parent=Os02t0521800-01
Chr02	irgsp1_rep	mRNA	19039879	19042203	.	+	.	ID=Os02t0522100-02;Name=Os02t0522100-02;Locus_id=Os02g0522100;Note=Similar to cDNA clone:J013126H19%2C full insert sequence.;Transcript_evidence=AK107057 (DDBJ%2C Best hit);ORF_evidence=B7EE64 (UniProt);GO=Biological Process: DNA integration (GO:0015074),Molecular Function: nucleic acid binding (GO:0003676);InterPro=Integrase%2C catalytic core (IPR001584),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=002-121-D09;TENOR=Os02t0522100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	19039879	19039879	.	+	.	Parent=Os02t0522100-02
Chr02	irgsp1_rep	CDS	19039880	19040113	.	+	0	Parent=Os02t0522100-02
Chr02	irgsp1_rep	three_prime_UTR	19040114	19040395	.	+	.	Parent=Os02t0522100-02
Chr02	irgsp1_rep	three_prime_UTR	19040765	19042203	.	+	.	Parent=Os02t0522100-02
Chr02	irgsp1_rep	mRNA	19044957	19050756	.	-	.	ID=Os02t0522300-01;Name=Os02t0522300-01;Locus_id=Os02g0522300;Note=Conserved hypothetical protein.;Transcript_evidence=AK068116 (DDBJ%2C Best hit);ORF_evidence=Q6UUM9 (UniProt);NIAS_FLcDNA=J013135P04;TENOR=Os02t0522300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	19048962	19050756	.	-	.	Parent=Os02t0522300-01
Chr02	irgsp1_rep	CDS	19048434	19048961	.	-	0	Parent=Os02t0522300-01
Chr02	irgsp1_rep	three_prime_UTR	19047632	19048433	.	-	.	Parent=Os02t0522300-01
Chr02	irgsp1_rep	three_prime_UTR	19044957	19045154	.	-	.	Parent=Os02t0522300-01
Chr02	irgsp1_rep	mRNA	19047984	19050754	.	-	.	ID=Os02t0522300-02;Name=Os02t0522300-02;Locus_id=Os02g0522300;Note=Conserved hypothetical protein.;Transcript_evidence=AK068634 (DDBJ%2C Best hit);ORF_evidence=Q7XLL3 (UniProt);NIAS_FLcDNA=J013157H05;TENOR=Os02t0522300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	19048962	19050754	.	-	.	Parent=Os02t0522300-02
Chr02	irgsp1_rep	CDS	19048434	19048961	.	-	0	Parent=Os02t0522300-02
Chr02	irgsp1_rep	three_prime_UTR	19047984	19048433	.	-	.	Parent=Os02t0522300-02
Chr02	irgsp1_rep	mRNA	19045383	19050727	.	-	.	ID=Os02t0522300-03;Name=Os02t0522300-03;Locus_id=Os02g0522300;Note=Similar to cDNA clone:001-036-H04%2C full insert sequence.;Transcript_evidence=AK120405 (DDBJ%2C Best hit);ORF_evidence=B7E6Q5 (UniProt);NIAS_FLcDNA=J013088P09;TENOR=Os02t0522300-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	19048549	19050727	.	-	.	Parent=Os02t0522300-03
Chr02	irgsp1_rep	CDS	19048072	19048548	.	-	0	Parent=Os02t0522300-03
Chr02	irgsp1_rep	three_prime_UTR	19045383	19048071	.	-	.	Parent=Os02t0522300-03
Chr02	irgsp1_rep	mRNA	19058884	19063009	.	+	.	ID=Os02t0522700-01;Name=Os02t0522700-01;Locus_id=Os02g0522700;Note=Hypothetical conserved gene.;Transcript_evidence=AK289163 (DDBJ%2C Best hit);ORF_evidence=B9F0B0 (UniProt);InterPro=Peptidase C65%2C otubain (IPR019400);NIAS_FLcDNA=J100008D10;TENOR=Os02t0522700-01;KEGG=Os02t0522700-01
Chr02	irgsp1_rep	five_prime_UTR	19058884	19058884	.	+	.	Parent=Os02t0522700-01
Chr02	irgsp1_rep	CDS	19058885	19059085	.	+	0	Parent=Os02t0522700-01
Chr02	irgsp1_rep	CDS	19059194	19059280	.	+	0	Parent=Os02t0522700-01
Chr02	irgsp1_rep	CDS	19060398	19060469	.	+	0	Parent=Os02t0522700-01
Chr02	irgsp1_rep	CDS	19060944	19061132	.	+	0	Parent=Os02t0522700-01
Chr02	irgsp1_rep	CDS	19061205	19061324	.	+	0	Parent=Os02t0522700-01
Chr02	irgsp1_rep	CDS	19061457	19061510	.	+	0	Parent=Os02t0522700-01
Chr02	irgsp1_rep	three_prime_UTR	19061511	19062036	.	+	.	Parent=Os02t0522700-01
Chr02	irgsp1_rep	three_prime_UTR	19062124	19062182	.	+	.	Parent=Os02t0522700-01
Chr02	irgsp1_rep	three_prime_UTR	19062270	19062379	.	+	.	Parent=Os02t0522700-01
Chr02	irgsp1_rep	three_prime_UTR	19062484	19063009	.	+	.	Parent=Os02t0522700-01
Chr02	irgsp1_rep	mRNA	19067338	19072348	.	+	.	ID=Os02t0522800-01;Name=Os02t0522800-01;Locus_id=Os02g0522800;Note=Peptidase C65%2C otubain domain containing protein.;Transcript_evidence=AK069352 (DDBJ%2C Best hit);ORF_evidence=B9F0B0 (UniProt);InterPro=Peptidase C65%2C otubain (IPR019400);NIAS_FLcDNA=J023014N14;TENOR=Os02t0522800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	19067338	19067607	.	+	.	Parent=Os02t0522800-01
Chr02	irgsp1_rep	five_prime_UTR	19067741	19069371	.	+	.	Parent=Os02t0522800-01
Chr02	irgsp1_rep	CDS	19069372	19069461	.	+	0	Parent=Os02t0522800-01
Chr02	irgsp1_rep	CDS	19069933	19070103	.	+	0	Parent=Os02t0522800-01
Chr02	irgsp1_rep	CDS	19070186	19070300	.	+	0	Parent=Os02t0522800-01
Chr02	irgsp1_rep	CDS	19070454	19070488	.	+	2	Parent=Os02t0522800-01
Chr02	irgsp1_rep	three_prime_UTR	19070489	19070979	.	+	.	Parent=Os02t0522800-01
Chr02	irgsp1_rep	three_prime_UTR	19071077	19071135	.	+	.	Parent=Os02t0522800-01
Chr02	irgsp1_rep	three_prime_UTR	19071214	19071308	.	+	.	Parent=Os02t0522800-01
Chr02	irgsp1_rep	three_prime_UTR	19071703	19072348	.	+	.	Parent=Os02t0522800-01
Chr02	irgsp1_rep	mRNA	19084413	19085860	.	+	.	ID=Os02t0523100-00;Name=Os02t0523100-00;Locus_id=Os02g0523100;Note=Hypothetical conserved gene.;Transcript_evidence=CT835404 (DDBJ%2C Best hit);ORF_evidence=A2X5H2 (UniProt);TENOR=Os02t0523100-00;KEGG=Os02t0523100-00
Chr02	irgsp1_rep	five_prime_UTR	19084413	19084501	.	+	.	Parent=Os02t0523100-00
Chr02	irgsp1_rep	five_prime_UTR	19084941	19084972	.	+	.	Parent=Os02t0523100-00
Chr02	irgsp1_rep	CDS	19084973	19085584	.	+	0	Parent=Os02t0523100-00
Chr02	irgsp1_rep	three_prime_UTR	19085585	19085860	.	+	.	Parent=Os02t0523100-00
Chr02	irgsp1_rep	mRNA	19086670	19088163	.	-	.	ID=Os02t0523201-00;Name=Os02t0523201-00;Locus_id=Os02g0523201;Note=Non-protein coding transcript.;Transcript_evidence=AK121467 (DDBJ%2C Secondary hit);ORF_evidence=NONE;TENOR=Os02t0523201-00
Chr02	irgsp1_rep	exon	19087931	19088163	.	-	.	Parent=Os02t0523201-00
Chr02	irgsp1_rep	exon	19086670	19086909	.	-	.	Parent=Os02t0523201-00
Chr02	irgsp1_rep	mRNA	19091026	19097394	.	-	.	ID=Os02t0523300-01;Name=Os02t0523300-01;Locus_id=Os02g0523300;Note=Similar to Spc97/Spc98 family protein%2C expressed.;Transcript_evidence=AK121782 (DDBJ%2C Best hit);ORF_evidence=Q2QMF8 (UniProt);GO=Biological Process: microtubule cytoskeleton organization (GO:0000226),Cellular Component: spindle pole (GO:0000922),Cellular Component: microtubule organizing center (GO:0005815);InterPro=Spc97/Spc98 (IPR007259);NIAS_FLcDNA=J033093P19;TENOR=Os02t0523300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	19097132	19097394	.	-	.	Parent=Os02t0523300-01
Chr02	irgsp1_rep	five_prime_UTR	19096688	19096688	.	-	.	Parent=Os02t0523300-01
Chr02	irgsp1_rep	CDS	19096535	19096687	.	-	0	Parent=Os02t0523300-01
Chr02	irgsp1_rep	CDS	19096150	19096410	.	-	0	Parent=Os02t0523300-01
Chr02	irgsp1_rep	CDS	19095970	19096064	.	-	0	Parent=Os02t0523300-01
Chr02	irgsp1_rep	CDS	19095435	19095597	.	-	1	Parent=Os02t0523300-01
Chr02	irgsp1_rep	CDS	19095227	19095337	.	-	0	Parent=Os02t0523300-01
Chr02	irgsp1_rep	CDS	19093502	19094632	.	-	0	Parent=Os02t0523300-01
Chr02	irgsp1_rep	CDS	19093278	19093430	.	-	0	Parent=Os02t0523300-01
Chr02	irgsp1_rep	CDS	19093084	19093183	.	-	0	Parent=Os02t0523300-01
Chr02	irgsp1_rep	CDS	19092817	19092911	.	-	2	Parent=Os02t0523300-01
Chr02	irgsp1_rep	CDS	19092563	19092736	.	-	0	Parent=Os02t0523300-01
Chr02	irgsp1_rep	CDS	19092437	19092493	.	-	0	Parent=Os02t0523300-01
Chr02	irgsp1_rep	CDS	19092286	19092357	.	-	0	Parent=Os02t0523300-01
Chr02	irgsp1_rep	CDS	19091997	19092095	.	-	0	Parent=Os02t0523300-01
Chr02	irgsp1_rep	CDS	19091795	19091926	.	-	0	Parent=Os02t0523300-01
Chr02	irgsp1_rep	CDS	19091518	19091691	.	-	0	Parent=Os02t0523300-01
Chr02	irgsp1_rep	CDS	19091286	19091417	.	-	0	Parent=Os02t0523300-01
Chr02	irgsp1_rep	three_prime_UTR	19091026	19091285	.	-	.	Parent=Os02t0523300-01
Chr02	irgsp1_rep	mRNA	19098871	19105461	.	-	.	ID=Os02t0523500-01;Name=Os02t0523500-01;Locus_id=Os02g0523500;RAP-DB Gene Symbol Synonym(s)=OsTSN%2C Rp120;RAP-DB Gene Name Synonym(s)=OsTudor-SN%2C cytoskeleton-associated 120 kDa RNA-binding protein;Oryzabase Gene Symbol Synonym(s)=Rp120%2C OsTSN%2C TSN;Oryzabase Gene Name Synonym(s)=cytoskeleton-associated 120 kDa RNA-binding protein%2C OsTudor-SN%2C Tudor-SN;Note=RNA-binding protein%2C Transport and localization of storage protein mRNAs%2C Modulation of gene expression;Transcript_evidence=AK065061;ORF_evidence=Q6H547;GO=Biological Process: gene silencing by RNA (GO:0031047),Cellular Component: RISC complex (GO:0016442);InterPro=SNase-like%2C OB-fold/extended TUDOR domain superfamily (IPR035437),RNA-induced silencing complex%2C nuclease component Tudor-SN (IPR016685),Staphylococcal nuclease (SNase-like)%2C OB-fold (IPR016071),Tudor domain (IPR002999);NIAS_FLcDNA=J013001J15;Manual Curation=December 14%2C 2017;Literature_PMID=29084903,11437252;Oryzabase=14511;Expression=AK065061;TENOR=Os02t0523500-01;KEGG=Os02t0523500-01
Chr02	irgsp1_rep	five_prime_UTR	19105258	19105461	.	-	.	Parent=Os02t0523500-01
Chr02	irgsp1_rep	five_prime_UTR	19104508	19104523	.	-	.	Parent=Os02t0523500-01
Chr02	irgsp1_rep	CDS	19104355	19104507	.	-	0	Parent=Os02t0523500-01
Chr02	irgsp1_rep	CDS	19103921	19103995	.	-	0	Parent=Os02t0523500-01
Chr02	irgsp1_rep	CDS	19103584	19103802	.	-	0	Parent=Os02t0523500-01
Chr02	irgsp1_rep	CDS	19103271	19103477	.	-	0	Parent=Os02t0523500-01
Chr02	irgsp1_rep	CDS	19102968	19103186	.	-	0	Parent=Os02t0523500-01
Chr02	irgsp1_rep	CDS	19102762	19102869	.	-	0	Parent=Os02t0523500-01
Chr02	irgsp1_rep	CDS	19102475	19102645	.	-	0	Parent=Os02t0523500-01
Chr02	irgsp1_rep	CDS	19102194	19102391	.	-	0	Parent=Os02t0523500-01
Chr02	irgsp1_rep	CDS	19101743	19102096	.	-	0	Parent=Os02t0523500-01
Chr02	irgsp1_rep	CDS	19101434	19101664	.	-	0	Parent=Os02t0523500-01
Chr02	irgsp1_rep	CDS	19101173	19101358	.	-	0	Parent=Os02t0523500-01
Chr02	irgsp1_rep	CDS	19101031	19101108	.	-	0	Parent=Os02t0523500-01
Chr02	irgsp1_rep	CDS	19100757	19100951	.	-	0	Parent=Os02t0523500-01
Chr02	irgsp1_rep	CDS	19099624	19100001	.	-	0	Parent=Os02t0523500-01
Chr02	irgsp1_rep	CDS	19099238	19099426	.	-	0	Parent=Os02t0523500-01
Chr02	irgsp1_rep	three_prime_UTR	19098871	19099237	.	-	.	Parent=Os02t0523500-01
Chr02	irgsp1_rep	mRNA	19098885	19101605	.	-	.	ID=Os02t0523500-02;Name=Os02t0523500-02;Locus_id=Os02g0523500;Oryzabase Gene Symbol Synonym(s)=Rp120%2C OsTSN%2C TSN;Oryzabase Gene Name Synonym(s)=cytoskeleton-associated 120 kDa RNA-binding protein%2C OsTudor-SN%2C Tudor-SN;Note=Similar to RNA binding protein Rp120.;Transcript_evidence=AK063159 (DDBJ%2C Best hit);ORF_evidence=Q7X6J0 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Tudor domain (IPR002999),Staphylococcal nuclease (SNase-like) (IPR006021),Maternal tudor protein (IPR008191),Staphylococcal nuclease (SNase-like)%2C OB-fold (IPR016071),Tudor subgroup (IPR018351);NIAS_FLcDNA=001-044-D08;Oryzabase=14511;Expression=AK063159;TENOR=Os02t0523500-02;KEGG=Os02t0523500-02
Chr02	irgsp1_rep	five_prime_UTR	19101605	19101605	.	-	.	Parent=Os02t0523500-02
Chr02	irgsp1_rep	CDS	19101434	19101604	.	-	0	Parent=Os02t0523500-02
Chr02	irgsp1_rep	CDS	19101173	19101358	.	-	0	Parent=Os02t0523500-02
Chr02	irgsp1_rep	CDS	19101031	19101108	.	-	0	Parent=Os02t0523500-02
Chr02	irgsp1_rep	CDS	19100757	19100951	.	-	0	Parent=Os02t0523500-02
Chr02	irgsp1_rep	CDS	19099624	19100001	.	-	0	Parent=Os02t0523500-02
Chr02	irgsp1_rep	CDS	19099238	19099426	.	-	0	Parent=Os02t0523500-02
Chr02	irgsp1_rep	three_prime_UTR	19098885	19099237	.	-	.	Parent=Os02t0523500-02
Chr02	irgsp1_rep	mRNA	19108142	19112274	.	-	.	ID=Os02t0523650-01;Name=Os02t0523650-01;Locus_id=Os02g0523650;Note=Conserved hypothetical protein.;Transcript_evidence=AK288598 (DDBJ%2C Best hit);ORF_evidence=B9FZ14 (UniProt);NIAS_FLcDNA=J090051P05;TENOR=Os02t0523650-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	19112072	19112274	.	-	.	Parent=Os02t0523650-01
Chr02	irgsp1_rep	CDS	19111856	19112071	.	-	0	Parent=Os02t0523650-01
Chr02	irgsp1_rep	three_prime_UTR	19108142	19111855	.	-	.	Parent=Os02t0523650-01
Chr02	irgsp1_rep	mRNA	19121903	19125625	.	+	.	ID=Os02t0523800-01;Name=Os02t0523800-01;Locus_id=Os02g0523800;RAP-DB Gene Symbol Synonym(s)=OsIPK2%2C ES2;RAP-DB Gene Name Synonym(s)=inositol polyphosphate kinase 2%2C EARLY SENESCENCE 2;Oryzabase Gene Symbol Synonym(s)=OsIPK2%2C IPK2%2C IP6K;Oryzabase Gene Name Synonym(s)=inositol 1%2C 3%2C 4%2C 5%2C 6-pentakisphosphate 2-kinase 2%2C IP6 Kinase;Note=Inositol polyphosphate kinase%2C Auxin signaling%2C Regulation of lateral root development%2C Leaf senescence;Transcript_evidence=AK072296;ORF_evidence=Q6H545;GO=Molecular Function: inositol-1%2C4%2C5-trisphosphate 3-kinase activity (GO:0008440);InterPro=Inositol polyphosphate kinase (IPR005522);NIAS_FLcDNA=J023018G11;Manual Curation=September 1%2C 2020;Literature_PMID=32847519,29016933,17961936;Oryzabase=11888;Expression=AK072296;TENOR=Os02t0523800-01;KEGG=Os02t0523800-01 (EC:2.7.1.140 2.7.1.151);Subcellular location=nucleus (GO:0005634), plasma membrane (GO:0005886)
Chr02	irgsp1_rep	five_prime_UTR	19121903	19122278	.	+	.	Parent=Os02t0523800-01
Chr02	irgsp1_rep	CDS	19122279	19123166	.	+	0	Parent=Os02t0523800-01
Chr02	irgsp1_rep	three_prime_UTR	19123167	19123201	.	+	.	Parent=Os02t0523800-01
Chr02	irgsp1_rep	three_prime_UTR	19125356	19125625	.	+	.	Parent=Os02t0523800-01
Chr02	irgsp1_rep	mRNA	19159607	19161523	.	+	.	ID=Os02t0524300-00;Name=Os02t0524300-00;Locus_id=Os02g0524300;Note=Similar to predicted protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_192900.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L19 (IPR001857),Translation protein SH3-like (IPR008991);TENOR=Os02t0524300-00
Chr02	irgsp1_rep	CDS	19159607	19159684	.	+	0	Parent=Os02t0524300-00
Chr02	irgsp1_rep	CDS	19159767	19159885	.	+	0	Parent=Os02t0524300-00
Chr02	irgsp1_rep	CDS	19161421	19161523	.	+	1	Parent=Os02t0524300-00
Chr02	irgsp1_rep	mRNA	19167977	19168266	.	+	.	ID=Os02t0524550-00;Name=Os02t0524550-00;Locus_id=Os02g0524550;Note=Non-protein coding transcript.;Transcript_evidence=CT835500 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os02t0524550-00
Chr02	irgsp1_rep	exon	19167977	19168266	.	+	.	Parent=Os02t0524550-00
Chr02	irgsp1_rep	mRNA	19178240	19179938	.	-	.	ID=Os02t0524600-01;Name=Os02t0524600-01;Locus_id=Os02g0524600;Oryzabase Gene Symbol Synonym(s)=OsTTG1B%2C TTG1B;Oryzabase Gene Name Synonym(s)=TRANSPARENT TESTA GLABRA1B%2C TRANSPARENT TESTA GLABRA 1B;Note=WD40 repeat protein.;Transcript_evidence=AK243061 (DDBJ%2C Best hit);ORF_evidence=Q6VGS4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J100014C18;Oryzabase=20920;TENOR=Os02t0524600-01;KEGG=Os02t0524600-01
Chr02	irgsp1_rep	five_prime_UTR	19179843	19179938	.	-	.	Parent=Os02t0524600-01
Chr02	irgsp1_rep	CDS	19178607	19179842	.	-	0	Parent=Os02t0524600-01
Chr02	irgsp1_rep	three_prime_UTR	19178240	19178606	.	-	.	Parent=Os02t0524600-01
Chr02	irgsp1_rep	mRNA	19180248	19181671	.	+	.	ID=Os02t0524800-01;Name=Os02t0524800-01;Locus_id=Os02g0524800;Note=Hypothetical protein.;Transcript_evidence=AK106670 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-113-H12;Expression=AK106670;TENOR=Os02t0524800-01;KEGG=Os02t0524800-01
Chr02	irgsp1_rep	five_prime_UTR	19180248	19180551	.	+	.	Parent=Os02t0524800-01
Chr02	irgsp1_rep	CDS	19180552	19181199	.	+	0	Parent=Os02t0524800-01
Chr02	irgsp1_rep	three_prime_UTR	19181200	19181671	.	+	.	Parent=Os02t0524800-01
Chr02	irgsp1_rep	mRNA	19186328	19187080	.	-	.	ID=Os02t0525100-01;Name=Os02t0525100-01;Locus_id=Os02g0525100;Note=Conserved hypothetical protein.;Transcript_evidence=AK062326 (DDBJ%2C Best hit);ORF_evidence=A2X5I1 (UniProt);NIAS_FLcDNA=001-101-D04;Expression=AK062326;TENOR=Os02t0525100-01;KEGG=Os02t0525100-01
Chr02	irgsp1_rep	five_prime_UTR	19186925	19187080	.	-	.	Parent=Os02t0525100-01
Chr02	irgsp1_rep	CDS	19186598	19186924	.	-	0	Parent=Os02t0525100-01
Chr02	irgsp1_rep	three_prime_UTR	19186328	19186597	.	-	.	Parent=Os02t0525100-01
Chr02	irgsp1_rep	mRNA	19192500	19197071	.	+	.	ID=Os02t0525400-01;Name=Os02t0525400-01;Locus_id=Os02g0525400;CGSNL Gene Symbol=STR14;CGSNL Gene Name=SULFURTRANSFERASE 14;Oryzabase Gene Symbol Synonym(s)=OsStr14;Oryzabase Gene Name Synonym(s)=Sulfurtransferase 14;Note=Similar to Molybdenum cofactor synthesis protein 3 (Molybdopterin synthase sulfurylase) (MPT synthase sulfurylase).;Transcript_evidence=AK065368 (DDBJ%2C Best hit);ORF_evidence=NP_001130855.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824);InterPro=UBA/THIF-type NAD/FAD binding fold (IPR000594),Molybdenum cofactor biosynthesis%2C MoeB (IPR009036),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013021B13;Oryzabase=12064;Expression=AK065368;TENOR=Os02t0525400-01;KEGG=Os02t0525400-01
Chr02	irgsp1_rep	five_prime_UTR	19192500	19192557	.	+	.	Parent=Os02t0525400-01
Chr02	irgsp1_rep	CDS	19192558	19192837	.	+	0	Parent=Os02t0525400-01
Chr02	irgsp1_rep	CDS	19192924	19193016	.	+	2	Parent=Os02t0525400-01
Chr02	irgsp1_rep	CDS	19193257	19193312	.	+	2	Parent=Os02t0525400-01
Chr02	irgsp1_rep	CDS	19193553	19193617	.	+	0	Parent=Os02t0525400-01
Chr02	irgsp1_rep	CDS	19193744	19193818	.	+	1	Parent=Os02t0525400-01
Chr02	irgsp1_rep	CDS	19193911	19193989	.	+	1	Parent=Os02t0525400-01
Chr02	irgsp1_rep	CDS	19194197	19194235	.	+	0	Parent=Os02t0525400-01
Chr02	irgsp1_rep	CDS	19194344	19194426	.	+	0	Parent=Os02t0525400-01
Chr02	irgsp1_rep	CDS	19194940	19194994	.	+	1	Parent=Os02t0525400-01
Chr02	irgsp1_rep	three_prime_UTR	19194995	19195058	.	+	.	Parent=Os02t0525400-01
Chr02	irgsp1_rep	three_prime_UTR	19195888	19196007	.	+	.	Parent=Os02t0525400-01
Chr02	irgsp1_rep	three_prime_UTR	19196452	19197071	.	+	.	Parent=Os02t0525400-01
Chr02	irgsp1_rep	mRNA	19201969	19202415	.	+	.	ID=Os02t0525501-00;Name=Os02t0525501-00;Locus_id=Os02g0525501;Note=Hypothetical gene.;Transcript_evidence=CT835371 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os02t0525501-00;KEGG=Os02t0525501-00
Chr02	irgsp1_rep	five_prime_UTR	19201969	19202060	.	+	.	Parent=Os02t0525501-00
Chr02	irgsp1_rep	CDS	19202061	19202243	.	+	0	Parent=Os02t0525501-00
Chr02	irgsp1_rep	CDS	19202253	19202333	.	+	0	Parent=Os02t0525501-00
Chr02	irgsp1_rep	three_prime_UTR	19202334	19202415	.	+	.	Parent=Os02t0525501-00
Chr02	irgsp1_rep	mRNA	19202942	19204204	.	-	.	ID=Os02t0525600-01;Name=Os02t0525600-01;Locus_id=Os02g0525600;Note=Similar to H0502B11.1 protein.;Transcript_evidence=AK069214 (DDBJ%2C Best hit);ORF_evidence=Q01L50 (UniProt);NIAS_FLcDNA=J023010K01;Expression=AK069214;TENOR=Os02t0525600-01;KEGG=Os02t0525600-01
Chr02	irgsp1_rep	five_prime_UTR	19204136	19204204	.	-	.	Parent=Os02t0525600-01
Chr02	irgsp1_rep	five_prime_UTR	19203680	19203709	.	-	.	Parent=Os02t0525600-01
Chr02	irgsp1_rep	CDS	19203335	19203679	.	-	0	Parent=Os02t0525600-01
Chr02	irgsp1_rep	three_prime_UTR	19202942	19203334	.	-	.	Parent=Os02t0525600-01
Chr02	irgsp1_rep	mRNA	19219047	19224960	.	+	.	ID=Os02t0525900-01;Name=Os02t0525900-01;Locus_id=Os02g0525900;Note=Similar to Acetyl-coenzyme A synthetase 2 (EC 6.2.1.1) (Acetate--CoA ligase 2) (Acyl-activating enzyme 2).;Transcript_evidence=AK066073 (DDBJ%2C Best hit);ORF_evidence=Q01L46 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: acetate-CoA ligase activity (GO:0003987),Molecular Function: AMP binding (GO:0016208);InterPro=AMP-dependent synthetase/ligase (IPR000873),Acetate-CoA ligase (IPR011904),AMP-binding%2C conserved site (IPR020845),Acyl-CoA synthase%2C domain of unknown function DUF3448 (IPR024597);NIAS_FLcDNA=J013058P13;Expression=AK066073;TENOR=Os02t0525900-01;KEGG=Os02t0525900-01 (EC:6.2.1.1)
Chr02	irgsp1_rep	five_prime_UTR	19219047	19219399	.	+	.	Parent=Os02t0525900-01
Chr02	irgsp1_rep	CDS	19219400	19219609	.	+	0	Parent=Os02t0525900-01
Chr02	irgsp1_rep	CDS	19219965	19220111	.	+	0	Parent=Os02t0525900-01
Chr02	irgsp1_rep	CDS	19220201	19220356	.	+	0	Parent=Os02t0525900-01
Chr02	irgsp1_rep	CDS	19220476	19220598	.	+	0	Parent=Os02t0525900-01
Chr02	irgsp1_rep	CDS	19220679	19220847	.	+	0	Parent=Os02t0525900-01
Chr02	irgsp1_rep	CDS	19221306	19221388	.	+	2	Parent=Os02t0525900-01
Chr02	irgsp1_rep	CDS	19221523	19221624	.	+	0	Parent=Os02t0525900-01
Chr02	irgsp1_rep	CDS	19221710	19221798	.	+	0	Parent=Os02t0525900-01
Chr02	irgsp1_rep	CDS	19221923	19222013	.	+	1	Parent=Os02t0525900-01
Chr02	irgsp1_rep	CDS	19222340	19222453	.	+	0	Parent=Os02t0525900-01
Chr02	irgsp1_rep	CDS	19222977	19223053	.	+	0	Parent=Os02t0525900-01
Chr02	irgsp1_rep	CDS	19223140	19223218	.	+	1	Parent=Os02t0525900-01
Chr02	irgsp1_rep	CDS	19223316	19223384	.	+	0	Parent=Os02t0525900-01
Chr02	irgsp1_rep	CDS	19223628	19223803	.	+	0	Parent=Os02t0525900-01
Chr02	irgsp1_rep	CDS	19223915	19223971	.	+	1	Parent=Os02t0525900-01
Chr02	irgsp1_rep	CDS	19224066	19224156	.	+	1	Parent=Os02t0525900-01
Chr02	irgsp1_rep	CDS	19224250	19224348	.	+	0	Parent=Os02t0525900-01
Chr02	irgsp1_rep	CDS	19224484	19224669	.	+	0	Parent=Os02t0525900-01
Chr02	irgsp1_rep	three_prime_UTR	19224670	19224960	.	+	.	Parent=Os02t0525900-01
Chr02	irgsp1_rep	mRNA	19219300	19224966	.	+	.	ID=Os02t0525900-02;Name=Os02t0525900-02;Locus_id=Os02g0525900;Note=Similar to Acetyl-coenzyme A synthetase 2 (EC 6.2.1.1) (Acetate--CoA ligase 2) (Acyl-activating enzyme 2).;Transcript_evidence=AK067696 (DDBJ%2C Best hit);ORF_evidence=Q01L46 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: acetate-CoA ligase activity (GO:0003987),Molecular Function: AMP binding (GO:0016208);InterPro=AMP-dependent synthetase/ligase (IPR000873),Acetate-CoA ligase (IPR011904),AMP-binding%2C conserved site (IPR020845),Acyl-CoA synthase%2C domain of unknown function DUF3448 (IPR024597);NIAS_FLcDNA=J013116F19;Expression=AK067696;TENOR=Os02t0525900-02;KEGG=Os02t0525900-02 (EC:6.2.1.1)
Chr02	irgsp1_rep	five_prime_UTR	19219300	19219399	.	+	.	Parent=Os02t0525900-02
Chr02	irgsp1_rep	CDS	19219400	19219609	.	+	0	Parent=Os02t0525900-02
Chr02	irgsp1_rep	CDS	19219965	19220111	.	+	0	Parent=Os02t0525900-02
Chr02	irgsp1_rep	CDS	19220201	19220356	.	+	0	Parent=Os02t0525900-02
Chr02	irgsp1_rep	CDS	19220476	19220598	.	+	0	Parent=Os02t0525900-02
Chr02	irgsp1_rep	CDS	19220679	19220847	.	+	0	Parent=Os02t0525900-02
Chr02	irgsp1_rep	CDS	19221306	19221388	.	+	2	Parent=Os02t0525900-02
Chr02	irgsp1_rep	CDS	19221523	19221624	.	+	0	Parent=Os02t0525900-02
Chr02	irgsp1_rep	CDS	19221710	19221798	.	+	0	Parent=Os02t0525900-02
Chr02	irgsp1_rep	CDS	19221923	19222013	.	+	1	Parent=Os02t0525900-02
Chr02	irgsp1_rep	CDS	19222340	19222453	.	+	0	Parent=Os02t0525900-02
Chr02	irgsp1_rep	CDS	19222977	19223053	.	+	0	Parent=Os02t0525900-02
Chr02	irgsp1_rep	CDS	19223140	19223218	.	+	1	Parent=Os02t0525900-02
Chr02	irgsp1_rep	CDS	19223316	19223384	.	+	0	Parent=Os02t0525900-02
Chr02	irgsp1_rep	CDS	19223628	19223803	.	+	0	Parent=Os02t0525900-02
Chr02	irgsp1_rep	CDS	19223915	19223971	.	+	1	Parent=Os02t0525900-02
Chr02	irgsp1_rep	CDS	19224066	19224156	.	+	1	Parent=Os02t0525900-02
Chr02	irgsp1_rep	CDS	19224250	19224348	.	+	0	Parent=Os02t0525900-02
Chr02	irgsp1_rep	CDS	19224484	19224669	.	+	0	Parent=Os02t0525900-02
Chr02	irgsp1_rep	three_prime_UTR	19224670	19224966	.	+	.	Parent=Os02t0525900-02
Chr02	irgsp1_rep	mRNA	19220801	19224934	.	+	.	ID=Os02t0525900-03;Name=Os02t0525900-03;Locus_id=Os02g0525900;Note=Similar to H0502B11.5 protein.;Transcript_evidence=AK060822 (DDBJ%2C Best hit);ORF_evidence=Q01L46 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: acetate-CoA ligase activity (GO:0003987),Molecular Function: AMP binding (GO:0016208);InterPro=AMP-dependent synthetase/ligase (IPR000873),Acetate-CoA ligase (IPR011904),AMP-binding%2C conserved site (IPR020845);NIAS_FLcDNA=001-034-B02;Expression=AK060822;TENOR=Os02t0525900-03;KEGG=Os02t0525900-03 (EC:6.2.1.1)
Chr02	irgsp1_rep	five_prime_UTR	19220801	19220801	.	+	.	Parent=Os02t0525900-03
Chr02	irgsp1_rep	CDS	19220802	19220847	.	+	0	Parent=Os02t0525900-03
Chr02	irgsp1_rep	CDS	19221306	19221388	.	+	2	Parent=Os02t0525900-03
Chr02	irgsp1_rep	CDS	19221523	19221624	.	+	0	Parent=Os02t0525900-03
Chr02	irgsp1_rep	CDS	19221710	19221798	.	+	0	Parent=Os02t0525900-03
Chr02	irgsp1_rep	CDS	19221923	19222013	.	+	1	Parent=Os02t0525900-03
Chr02	irgsp1_rep	CDS	19222340	19222453	.	+	0	Parent=Os02t0525900-03
Chr02	irgsp1_rep	CDS	19222977	19223053	.	+	0	Parent=Os02t0525900-03
Chr02	irgsp1_rep	CDS	19223140	19223218	.	+	1	Parent=Os02t0525900-03
Chr02	irgsp1_rep	CDS	19223316	19223384	.	+	0	Parent=Os02t0525900-03
Chr02	irgsp1_rep	CDS	19223628	19223803	.	+	0	Parent=Os02t0525900-03
Chr02	irgsp1_rep	CDS	19223915	19223971	.	+	1	Parent=Os02t0525900-03
Chr02	irgsp1_rep	CDS	19224066	19224156	.	+	1	Parent=Os02t0525900-03
Chr02	irgsp1_rep	CDS	19224250	19224348	.	+	0	Parent=Os02t0525900-03
Chr02	irgsp1_rep	CDS	19224484	19224669	.	+	0	Parent=Os02t0525900-03
Chr02	irgsp1_rep	three_prime_UTR	19224670	19224934	.	+	.	Parent=Os02t0525900-03
Chr02	irgsp1_rep	mRNA	19225385	19235632	.	-	.	ID=Os02t0526000-01;Name=Os02t0526000-01;Locus_id=Os02g0526000;Note=Similar to H0502B11.6 protein.;Transcript_evidence=AK288370 (DDBJ%2C Best hit);ORF_evidence=Q01L45 (UniProt);InterPro=Protein of unknown function DUF1624 (IPR012429);NIAS_FLcDNA=J090026C24;TENOR=Os02t0526000-01;KEGG=Os02t0526000-01
Chr02	irgsp1_rep	five_prime_UTR	19235437	19235632	.	-	.	Parent=Os02t0526000-01
Chr02	irgsp1_rep	five_prime_UTR	19235263	19235327	.	-	.	Parent=Os02t0526000-01
Chr02	irgsp1_rep	CDS	19235068	19235262	.	-	0	Parent=Os02t0526000-01
Chr02	irgsp1_rep	CDS	19228132	19228269	.	-	0	Parent=Os02t0526000-01
Chr02	irgsp1_rep	CDS	19227957	19228038	.	-	0	Parent=Os02t0526000-01
Chr02	irgsp1_rep	CDS	19227719	19227795	.	-	2	Parent=Os02t0526000-01
Chr02	irgsp1_rep	CDS	19227490	19227596	.	-	0	Parent=Os02t0526000-01
Chr02	irgsp1_rep	CDS	19227078	19227189	.	-	1	Parent=Os02t0526000-01
Chr02	irgsp1_rep	CDS	19226873	19226989	.	-	0	Parent=Os02t0526000-01
Chr02	irgsp1_rep	CDS	19226690	19226781	.	-	0	Parent=Os02t0526000-01
Chr02	irgsp1_rep	CDS	19226508	19226574	.	-	1	Parent=Os02t0526000-01
Chr02	irgsp1_rep	CDS	19226339	19226417	.	-	0	Parent=Os02t0526000-01
Chr02	irgsp1_rep	CDS	19226152	19226243	.	-	2	Parent=Os02t0526000-01
Chr02	irgsp1_rep	CDS	19225912	19226055	.	-	0	Parent=Os02t0526000-01
Chr02	irgsp1_rep	CDS	19225693	19225719	.	-	0	Parent=Os02t0526000-01
Chr02	irgsp1_rep	three_prime_UTR	19225385	19225692	.	-	.	Parent=Os02t0526000-01
Chr02	irgsp1_rep	mRNA	19225385	19229069	.	-	.	ID=Os02t0526000-02;Name=Os02t0526000-02;Locus_id=Os02g0526000;Note=Similar to H0502B11.6 protein.;Transcript_evidence=AK071231 (DDBJ%2C Best hit);ORF_evidence=Q01L45 (UniProt);InterPro=Protein of unknown function DUF1624 (IPR012429);NIAS_FLcDNA=J023086J19;TENOR=Os02t0526000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	19228878	19229069	.	-	.	Parent=Os02t0526000-02
Chr02	irgsp1_rep	CDS	19228782	19228877	.	-	0	Parent=Os02t0526000-02
Chr02	irgsp1_rep	CDS	19228132	19228269	.	-	0	Parent=Os02t0526000-02
Chr02	irgsp1_rep	CDS	19227957	19228038	.	-	0	Parent=Os02t0526000-02
Chr02	irgsp1_rep	CDS	19227719	19227795	.	-	2	Parent=Os02t0526000-02
Chr02	irgsp1_rep	CDS	19227490	19227596	.	-	0	Parent=Os02t0526000-02
Chr02	irgsp1_rep	CDS	19227078	19227189	.	-	1	Parent=Os02t0526000-02
Chr02	irgsp1_rep	CDS	19226873	19226989	.	-	0	Parent=Os02t0526000-02
Chr02	irgsp1_rep	CDS	19226690	19226781	.	-	0	Parent=Os02t0526000-02
Chr02	irgsp1_rep	CDS	19226508	19226574	.	-	1	Parent=Os02t0526000-02
Chr02	irgsp1_rep	CDS	19226339	19226417	.	-	0	Parent=Os02t0526000-02
Chr02	irgsp1_rep	CDS	19226152	19226243	.	-	2	Parent=Os02t0526000-02
Chr02	irgsp1_rep	CDS	19225912	19226055	.	-	0	Parent=Os02t0526000-02
Chr02	irgsp1_rep	CDS	19225693	19225719	.	-	0	Parent=Os02t0526000-02
Chr02	irgsp1_rep	three_prime_UTR	19225385	19225692	.	-	.	Parent=Os02t0526000-02
Chr02	irgsp1_rep	mRNA	19225378	19226769	.	-	.	ID=Os02t0526000-03;Name=Os02t0526000-03;Locus_id=Os02g0526000;Note=Similar to H0502B11.6 protein.;Transcript_evidence=AK058905 (DDBJ%2C Best hit);ORF_evidence=Q01L45 (UniProt);NIAS_FLcDNA=001-008-C09;Expression=AK058905;TENOR=Os02t0526000-03;KEGG=Os02t0526000-03
Chr02	irgsp1_rep	CDS	19226690	19226769	.	-	0	Parent=Os02t0526000-03
Chr02	irgsp1_rep	CDS	19226508	19226574	.	-	1	Parent=Os02t0526000-03
Chr02	irgsp1_rep	CDS	19226339	19226417	.	-	0	Parent=Os02t0526000-03
Chr02	irgsp1_rep	CDS	19226152	19226243	.	-	2	Parent=Os02t0526000-03
Chr02	irgsp1_rep	CDS	19225912	19226055	.	-	0	Parent=Os02t0526000-03
Chr02	irgsp1_rep	CDS	19225693	19225719	.	-	0	Parent=Os02t0526000-03
Chr02	irgsp1_rep	three_prime_UTR	19225378	19225692	.	-	.	Parent=Os02t0526000-03
Chr02	irgsp1_rep	mRNA	19251968	19256233	.	+	.	ID=Os02t0526400-01;Name=Os02t0526400-01;Locus_id=Os02g0526400;RAP-DB Gene Symbol Synonym(s)=OsClpD1%2C OsClpD1.3;CGSNL Gene Symbol=ERD1;CGSNL Gene Name=EARLY RESPONSIVE TO DEHYDRATION 1;Oryzabase Gene Symbol Synonym(s)=CLPD1%2C ClpD1%2C OsERD1%2C OSClpD%2C osClpD%2C OsClpD1%2C OsClpD1.1%2C OsClpD1.2%2C OsClpD1.3%2C OsClpD1.4;Oryzabase Gene Name Synonym(s)=class I Clp ATPase D1%2C early responsive to drought 1;Note=Caseinolytic protease regulatory ATPase module%2C Intrinsic chaperone%2C Tolerance to salt and desiccation stresses;Transcript_evidence=AK068727;ORF_evidence=A3A7I6;GO=Biological Process: protein metabolic process (GO:0019538),Molecular Function: ATP binding (GO:0005524);InterPro=Clp%2C N-terminal domain superfamily (IPR036628),P-loop containing nucleoside triphosphate hydrolase (IPR027417),ClpA/B family (IPR001270),Clp%2C N-terminal (IPR004176),AAA+ ATPase domain (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ClpA/ClpB%2C AAA lid domain (IPR041546),Clp ATPase%2C C-terminal (IPR019489),ClpA/B%2C conserved site 1 (IPR018368),ClpA/B%2C conserved site 2 (IPR028299);NIAS_FLcDNA=J013159L15;Manual Curation=May 22%2C 2020;Literature_PMID=27457985;Oryzabase=8950;Expression=AK068727;TENOR=Os02t0526400-01;KEGG=Os02t0526400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	19251968	19252081	.	+	.	Parent=Os02t0526400-01
Chr02	irgsp1_rep	CDS	19252082	19252233	.	+	0	Parent=Os02t0526400-01
Chr02	irgsp1_rep	CDS	19252661	19252830	.	+	1	Parent=Os02t0526400-01
Chr02	irgsp1_rep	CDS	19252927	19253156	.	+	2	Parent=Os02t0526400-01
Chr02	irgsp1_rep	CDS	19253263	19253371	.	+	0	Parent=Os02t0526400-01
Chr02	irgsp1_rep	CDS	19253464	19253591	.	+	2	Parent=Os02t0526400-01
Chr02	irgsp1_rep	CDS	19253708	19253809	.	+	0	Parent=Os02t0526400-01
Chr02	irgsp1_rep	CDS	19253891	19254172	.	+	0	Parent=Os02t0526400-01
Chr02	irgsp1_rep	CDS	19254266	19254375	.	+	0	Parent=Os02t0526400-01
Chr02	irgsp1_rep	CDS	19254457	19254751	.	+	1	Parent=Os02t0526400-01
Chr02	irgsp1_rep	CDS	19254848	19255081	.	+	0	Parent=Os02t0526400-01
Chr02	irgsp1_rep	CDS	19255311	19255541	.	+	0	Parent=Os02t0526400-01
Chr02	irgsp1_rep	CDS	19255773	19256084	.	+	0	Parent=Os02t0526400-01
Chr02	irgsp1_rep	three_prime_UTR	19256085	19256233	.	+	.	Parent=Os02t0526400-01
Chr02	irgsp1_rep	mRNA	19256918	19260039	.	-	.	ID=Os02t0526500-01;Name=Os02t0526500-01;Locus_id=Os02g0526500;Note=Similar to SAM domain family protein.;Transcript_evidence=AK067722 (DDBJ%2C Best hit);ORF_evidence=B6UBY0 (UniProt);InterPro=Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 (IPR003397);NIAS_FLcDNA=J013120F02;TENOR=Os02t0526500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	19259989	19260039	.	-	.	Parent=Os02t0526500-01
Chr02	irgsp1_rep	CDS	19259695	19259988	.	-	0	Parent=Os02t0526500-01
Chr02	irgsp1_rep	CDS	19258922	19259041	.	-	0	Parent=Os02t0526500-01
Chr02	irgsp1_rep	three_prime_UTR	19258599	19258921	.	-	.	Parent=Os02t0526500-01
Chr02	irgsp1_rep	three_prime_UTR	19257537	19258574	.	-	.	Parent=Os02t0526500-01
Chr02	irgsp1_rep	three_prime_UTR	19257385	19257447	.	-	.	Parent=Os02t0526500-01
Chr02	irgsp1_rep	three_prime_UTR	19256918	19257244	.	-	.	Parent=Os02t0526500-01
Chr02	irgsp1_rep	mRNA	19260190	19262199	.	+	.	ID=Os02t0526600-01;Name=Os02t0526600-01;Locus_id=Os02g0526600;Note=Peptidase C12%2C ubiquitin carboxyl-terminal hydrolase 1 domain containing protein.;Transcript_evidence=AK099944 (DDBJ%2C Best hit);ORF_evidence=NP_199615.1 (RefSeq);InterPro=Plant organelle RNA recognition domain (IPR021099);NIAS_FLcDNA=J013122D20;Expression=AK099944;TENOR=Os02t0526600-01;KEGG=Os02t0526600-01
Chr02	irgsp1_rep	five_prime_UTR	19260190	19260217	.	+	.	Parent=Os02t0526600-01
Chr02	irgsp1_rep	CDS	19260218	19261378	.	+	0	Parent=Os02t0526600-01
Chr02	irgsp1_rep	three_prime_UTR	19261379	19261516	.	+	.	Parent=Os02t0526600-01
Chr02	irgsp1_rep	three_prime_UTR	19261907	19262199	.	+	.	Parent=Os02t0526600-01
Chr02	irgsp1_rep	mRNA	19268420	19269950	.	-	.	ID=Os02t0526650-01;Name=Os02t0526650-01;Locus_id=Os02g0526650;Note=Hypothetical gene.;Transcript_evidence=AK289036 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090091J22;TENOR=Os02t0526650-01;KEGG=Os02t0526650-01
Chr02	irgsp1_rep	five_prime_UTR	19269411	19269950	.	-	.	Parent=Os02t0526650-01
Chr02	irgsp1_rep	CDS	19269186	19269410	.	-	0	Parent=Os02t0526650-01
Chr02	irgsp1_rep	three_prime_UTR	19268420	19269185	.	-	.	Parent=Os02t0526650-01
Chr02	irgsp1_rep	mRNA	19271581	19272933	.	-	.	ID=Os02t0526700-00;Name=Os02t0526700-00;Locus_id=Os02g0526700;Note=Conserved hypothetical protein.;Transcript_evidence=EU974894 (DDBJ);ORF_evidence=NP_001047000.1 (RefSeq);TENOR=Os02t0526700-00;KEGG=Os02t0526700-00
Chr02	irgsp1_rep	five_prime_UTR	19272919	19272933	.	-	.	Parent=Os02t0526700-00
Chr02	irgsp1_rep	CDS	19271581	19272918	.	-	0	Parent=Os02t0526700-00
Chr02	irgsp1_rep	mRNA	19294748	19303246	.	+	.	ID=Os02t0527100-01;Name=Os02t0527100-01;Locus_id=Os02g0527100;CGSNL Gene Symbol=DLN56;CGSNL Gene Name=DLN REPRESSOR 56;Oryzabase Gene Symbol Synonym(s)=OsDLN56;Oryzabase Gene Name Synonym(s)=DLN repressor 56%2C DLN motif protein 56;Note=DEAD-like helicase%2C N-terminal domain containing protein.;Transcript_evidence=AK063375 (DDBJ%2C Best hit);ORF_evidence=XP_002328182.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: helicase activity (GO:0004386),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: zinc ion binding (GO:0008270);InterPro=SNF2-related (IPR000330),Helicase%2C C-terminal (IPR001650),Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),DEAD-like helicase (IPR014001),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=001-114-F01;Oryzabase=23171;Expression=AK063375;TENOR=Os02t0527100-01;KEGG=Os02t0527100-01
Chr02	irgsp1_rep	five_prime_UTR	19294748	19294748	.	+	.	Parent=Os02t0527100-01
Chr02	irgsp1_rep	CDS	19294749	19294774	.	+	0	Parent=Os02t0527100-01
Chr02	irgsp1_rep	CDS	19294869	19295004	.	+	1	Parent=Os02t0527100-01
Chr02	irgsp1_rep	CDS	19295476	19295529	.	+	0	Parent=Os02t0527100-01
Chr02	irgsp1_rep	CDS	19295601	19295741	.	+	0	Parent=Os02t0527100-01
Chr02	irgsp1_rep	CDS	19295826	19295977	.	+	0	Parent=Os02t0527100-01
Chr02	irgsp1_rep	CDS	19296068	19296152	.	+	1	Parent=Os02t0527100-01
Chr02	irgsp1_rep	CDS	19296253	19296522	.	+	0	Parent=Os02t0527100-01
Chr02	irgsp1_rep	CDS	19296686	19296832	.	+	0	Parent=Os02t0527100-01
Chr02	irgsp1_rep	CDS	19297496	19297651	.	+	0	Parent=Os02t0527100-01
Chr02	irgsp1_rep	CDS	19297829	19297896	.	+	0	Parent=Os02t0527100-01
Chr02	irgsp1_rep	CDS	19298622	19298742	.	+	1	Parent=Os02t0527100-01
Chr02	irgsp1_rep	CDS	19298814	19298915	.	+	0	Parent=Os02t0527100-01
Chr02	irgsp1_rep	CDS	19298996	19299108	.	+	0	Parent=Os02t0527100-01
Chr02	irgsp1_rep	CDS	19299319	19299591	.	+	1	Parent=Os02t0527100-01
Chr02	irgsp1_rep	CDS	19299680	19299880	.	+	1	Parent=Os02t0527100-01
Chr02	irgsp1_rep	CDS	19300869	19300962	.	+	1	Parent=Os02t0527100-01
Chr02	irgsp1_rep	CDS	19301570	19301641	.	+	0	Parent=Os02t0527100-01
Chr02	irgsp1_rep	CDS	19302585	19302683	.	+	0	Parent=Os02t0527100-01
Chr02	irgsp1_rep	CDS	19302860	19302982	.	+	0	Parent=Os02t0527100-01
Chr02	irgsp1_rep	three_prime_UTR	19302983	19303246	.	+	.	Parent=Os02t0527100-01
Chr02	irgsp1_rep	mRNA	19303396	19304620	.	-	.	ID=Os02t0527200-01;Name=Os02t0527200-01;Locus_id=Os02g0527200;Note=Similar to OSIGBa0142C11.2 protein.;Transcript_evidence=AK058851 (DDBJ%2C Best hit);ORF_evidence=Q01L57 (UniProt);NIAS_FLcDNA=001-005-A09;Expression=AK058851;TENOR=Os02t0527200-01;KEGG=Os02t0527200-01
Chr02	irgsp1_rep	five_prime_UTR	19304552	19304620	.	-	.	Parent=Os02t0527200-01
Chr02	irgsp1_rep	CDS	19304152	19304551	.	-	0	Parent=Os02t0527200-01
Chr02	irgsp1_rep	CDS	19303824	19304026	.	-	2	Parent=Os02t0527200-01
Chr02	irgsp1_rep	three_prime_UTR	19303396	19303823	.	-	.	Parent=Os02t0527200-01
Chr02	irgsp1_rep	mRNA	19309756	19312859	.	-	.	ID=Os02t0527300-01;Name=Os02t0527300-01;Locus_id=Os02g0527300;CGSNL Gene Symbol=HSFA3;CGSNL Gene Name=HEAT STRESS TRANSCRIPTION FACTOR A3;Oryzabase Gene Symbol Synonym(s)=HSfA3%2C OsHsfA3%2C OsHsf-07%2C HSF07%2C OsHSF7%2C HSF7%2C DLN57%2C OsDLN57;Oryzabase Gene Name Synonym(s)=Heat stress transcription factor A3%2C Heat stress transcription factor A-3%2C Heat stress transcription factor 7%2C DLN repressor 57%2C DLN motif protein 57;Note=Similar to Heat shock transcription factor 31 (Fragment).;Transcript_evidence=AK101934 (DDBJ%2C Best hit);ORF_evidence=Q6H6Q7 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Heat shock factor (HSF)-type%2C DNA-binding (IPR000232),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=J033073P11;Oryzabase=8553;Expression=AK101934;TENOR=Os02t0527300-01;KEGG=Os02t0527300-01
Chr02	irgsp1_rep	five_prime_UTR	19312781	19312859	.	-	.	Parent=Os02t0527300-01
Chr02	irgsp1_rep	CDS	19312403	19312780	.	-	0	Parent=Os02t0527300-01
Chr02	irgsp1_rep	CDS	19309986	19311104	.	-	0	Parent=Os02t0527300-01
Chr02	irgsp1_rep	three_prime_UTR	19309756	19309985	.	-	.	Parent=Os02t0527300-01
Chr02	irgsp1_rep	mRNA	19323063	19323458	.	+	.	ID=Os02t0527500-00;Name=Os02t0527500-00;Locus_id=Os02g0527500;Note=Similar to predicted protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q43557 (UniProt);InterPro=Protein of unknown function DUF642 (IPR006946);TENOR=Os02t0527500-00;KEGG=Os02t0527500-00
Chr02	irgsp1_rep	CDS	19323063	19323458	.	+	0	Parent=Os02t0527500-00
Chr02	irgsp1_rep	mRNA	19324219	19332130	.	-	.	ID=Os02t0527600-01;Name=Os02t0527600-01;Locus_id=Os02g0527600;RAP-DB Gene Symbol Synonym(s)=OsCTR2;RAP-DB Gene Name Synonym(s)=CONSTITUTIVE TRIPLE-RESPONSE2;Oryzabase Gene Symbol Synonym(s)=OsCTR2%2C CTR2;Oryzabase Gene Name Synonym(s)=CONSTITUTIVE TRIPLE-RESPONSE2;Note=Functional homolog of Arabidopsis Raf-like protein CONSTITUTIVE TRIPLE RESPONSE1 (CTR1)%2C Ethylene-receptor signalling;Transcript_evidence=AK288723;ORF_evidence=A0A0P0VJX9;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),Protein kinase domain (IPR000719),Serine-threonine/tyrosine-protein kinase%2C catalytic domain (IPR001245),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J090063A13;Manual Curation=March 23%2C 2020;Literature_PMID=24006427;Oryzabase=14991;TENOR=Os02t0527600-01;KEGG=Os02t0527600-01;Subcellular location=endoplasmic reticulum (GO:0005783)
Chr02	irgsp1_rep	five_prime_UTR	19331984	19332130	.	-	.	Parent=Os02t0527600-01
Chr02	irgsp1_rep	CDS	19331450	19331983	.	-	0	Parent=Os02t0527600-01
Chr02	irgsp1_rep	CDS	19331069	19331367	.	-	0	Parent=Os02t0527600-01
Chr02	irgsp1_rep	CDS	19330840	19330987	.	-	1	Parent=Os02t0527600-01
Chr02	irgsp1_rep	CDS	19330417	19330520	.	-	0	Parent=Os02t0527600-01
Chr02	irgsp1_rep	CDS	19329872	19330080	.	-	1	Parent=Os02t0527600-01
Chr02	irgsp1_rep	CDS	19329152	19329302	.	-	2	Parent=Os02t0527600-01
Chr02	irgsp1_rep	CDS	19328949	19329064	.	-	1	Parent=Os02t0527600-01
Chr02	irgsp1_rep	CDS	19328241	19328281	.	-	2	Parent=Os02t0527600-01
Chr02	irgsp1_rep	CDS	19327900	19327968	.	-	0	Parent=Os02t0527600-01
Chr02	irgsp1_rep	CDS	19327496	19327596	.	-	0	Parent=Os02t0527600-01
Chr02	irgsp1_rep	CDS	19327308	19327392	.	-	1	Parent=Os02t0527600-01
Chr02	irgsp1_rep	CDS	19327059	19327157	.	-	0	Parent=Os02t0527600-01
Chr02	irgsp1_rep	CDS	19326543	19326611	.	-	0	Parent=Os02t0527600-01
Chr02	irgsp1_rep	CDS	19326324	19326455	.	-	0	Parent=Os02t0527600-01
Chr02	irgsp1_rep	CDS	19326142	19326236	.	-	0	Parent=Os02t0527600-01
Chr02	irgsp1_rep	CDS	19325966	19326059	.	-	1	Parent=Os02t0527600-01
Chr02	irgsp1_rep	three_prime_UTR	19324219	19325965	.	-	.	Parent=Os02t0527600-01
Chr02	irgsp1_rep	mRNA	19332473	19333623	.	-	.	ID=Os02t0527650-00;Name=Os02t0527650-00;Locus_id=Os02g0527650;Note=Hypothetical conserved gene.;Transcript_evidence=CT832692 (DDBJ%2C Best hit);ORF_evidence=B9F0C2 (UniProt);TENOR=Os02t0527650-00;KEGG=Os02t0527650-00
Chr02	irgsp1_rep	five_prime_UTR	19332926	19333623	.	-	.	Parent=Os02t0527650-00
Chr02	irgsp1_rep	CDS	19332587	19332925	.	-	0	Parent=Os02t0527650-00
Chr02	irgsp1_rep	three_prime_UTR	19332473	19332586	.	-	.	Parent=Os02t0527650-00
Chr02	irgsp1_rep	mRNA	19332701	19333869	.	+	.	ID=Os02t0527700-01;Name=Os02t0527700-01;Locus_id=Os02g0527700;Note=Hypothetical protein.;Transcript_evidence=AK069409 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023018M02;Expression=AK069409;TENOR=Os02t0527700-01;KEGG=Os02t0527700-01
Chr02	irgsp1_rep	five_prime_UTR	19332701	19333120	.	+	.	Parent=Os02t0527700-01
Chr02	irgsp1_rep	CDS	19333121	19333396	.	+	0	Parent=Os02t0527700-01
Chr02	irgsp1_rep	three_prime_UTR	19333397	19333869	.	+	.	Parent=Os02t0527700-01
Chr02	irgsp1_rep	mRNA	19338003	19338549	.	-	.	ID=Os02t0527800-00;Name=Os02t0527800-00;Locus_id=Os02g0527800;Note=Hypothetical gene.;Transcript_evidence=AK062999 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;Expression=AK062999;TENOR=Os02t0527800-00;KEGG=Os02t0527800-00
Chr02	irgsp1_rep	five_prime_UTR	19338513	19338549	.	-	.	Parent=Os02t0527800-00
Chr02	irgsp1_rep	CDS	19338150	19338512	.	-	0	Parent=Os02t0527800-00
Chr02	irgsp1_rep	three_prime_UTR	19338003	19338149	.	-	.	Parent=Os02t0527800-00
Chr02	irgsp1_rep	mRNA	19342019	19343889	.	+	.	ID=Os02t0527900-00;Name=Os02t0527900-00;Locus_id=Os02g0527900;Note=Hypothetical conserved gene.;Transcript_evidence=FP099249 (DDBJ);ORF_evidence=Q6H6Q2 (UniProt);GO=Biological Process: recognition of pollen (GO:0048544),Molecular Function: sugar binding (GO:0005529);InterPro=S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609);TENOR=Os02t0527900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	19342019	19342167	.	+	.	Parent=Os02t0527900-00
Chr02	irgsp1_rep	CDS	19342168	19343736	.	+	0	Parent=Os02t0527900-00
Chr02	irgsp1_rep	three_prime_UTR	19343737	19343889	.	+	.	Parent=Os02t0527900-00
Chr02	irgsp1_rep	mRNA	19344874	19345136	.	-	.	ID=Os02t0527950-00;Name=Os02t0527950-00;Locus_id=Os02g0527950;Note=Hypothetical conserved gene.;Transcript_evidence=EU943492 (DDBJ);ORF_evidence=B6TW49 (UniProt);TENOR=Os02t0527950-00;KEGG=Os02t0527950-00
Chr02	irgsp1_rep	five_prime_UTR	19345087	19345136	.	-	.	Parent=Os02t0527950-00
Chr02	irgsp1_rep	CDS	19344874	19345086	.	-	0	Parent=Os02t0527950-00
Chr02	irgsp1_rep	mRNA	19347064	19351299	.	-	.	ID=Os02t0528000-00;Name=Os02t0528000-00;Locus_id=Os02g0528000;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=AK358718 (DDBJ);ORF_evidence=Q6H6Q0 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os02t0528000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	19351235	19351299	.	-	.	Parent=Os02t0528000-00
Chr02	irgsp1_rep	CDS	19350900	19351234	.	-	0	Parent=Os02t0528000-00
Chr02	irgsp1_rep	CDS	19347064	19347523	.	-	1	Parent=Os02t0528000-00
Chr02	irgsp1_rep	mRNA	19352578	19354894	.	-	.	ID=Os02t0528100-01;Name=Os02t0528100-01;Locus_id=Os02g0528100;Note=Protein of unknown function DUF662 family protein.;Transcript_evidence=AK063839 (DDBJ%2C Best hit);ORF_evidence=B7EU28 (UniProt);InterPro=Golgin%2C RAB6-interacting (IPR007033);NIAS_FLcDNA=001-122-B11;Expression=AK063839;TENOR=Os02t0528100-01;KEGG=Os02t0528100-01
Chr02	irgsp1_rep	five_prime_UTR	19354765	19354894	.	-	.	Parent=Os02t0528100-01
Chr02	irgsp1_rep	CDS	19354507	19354764	.	-	0	Parent=Os02t0528100-01
Chr02	irgsp1_rep	CDS	19354304	19354414	.	-	0	Parent=Os02t0528100-01
Chr02	irgsp1_rep	CDS	19354080	19354160	.	-	0	Parent=Os02t0528100-01
Chr02	irgsp1_rep	CDS	19352828	19352902	.	-	0	Parent=Os02t0528100-01
Chr02	irgsp1_rep	three_prime_UTR	19352578	19352827	.	-	.	Parent=Os02t0528100-01
Chr02	irgsp1_rep	mRNA	19352647	19354832	.	-	.	ID=Os02t0528100-02;Name=Os02t0528100-02;Locus_id=Os02g0528100;Note=Similar to predicted protein.;Transcript_evidence=AK103078 (DDBJ%2C Best hit);ORF_evidence=A2X5J9 (UniProt);InterPro=Golgin%2C RAB6-interacting (IPR007033);NIAS_FLcDNA=J033118E13;Expression=AK103078;TENOR=Os02t0528100-02;KEGG=Os02t0528100-02
Chr02	irgsp1_rep	five_prime_UTR	19354765	19354832	.	-	.	Parent=Os02t0528100-02
Chr02	irgsp1_rep	CDS	19354507	19354764	.	-	0	Parent=Os02t0528100-02
Chr02	irgsp1_rep	CDS	19354304	19354414	.	-	0	Parent=Os02t0528100-02
Chr02	irgsp1_rep	CDS	19354044	19354160	.	-	0	Parent=Os02t0528100-02
Chr02	irgsp1_rep	three_prime_UTR	19352647	19354043	.	-	.	Parent=Os02t0528100-02
Chr02	irgsp1_rep	mRNA	19355790	19367127	.	-	.	ID=Os02t0528200-01;Name=Os02t0528200-01;Locus_id=Os02g0528200;RAP-DB Gene Symbol Synonym(s)=SBE3%2C SBEIII*%2C SBEIII%2C Sbe3%2C RBE3%2C QEIIa%2C QEIIA%2C BEIIb%2C BEIIB%2C SBEIIb%2C OsBEIIb%2C sbe3%2C SBE III;RAP-DB Gene Name Synonym(s)=STARCH BRANCHING ENZYME 3%2C starch branching enzyme3%2C starch branching enzyme 3%2C Starch branching enzyme III%2C Starch branching enzyme-3%2C starch branching enzyme IIb%2C branching enzyme-3;CGSNL Gene Symbol=SBE3;CGSNL Gene Name=STARCH BRANCHING ENZYME 3;Oryzabase Gene Symbol Synonym(s)=SBEIII*%2C SBEIII%2C Sbe3%2C RBE3%2C QEIIa%2C QEIIA%2C BEIIb%2C BEIIB%2C SBEIIb%2C OsBEIIb%2C sbe3%2C SBE III%2C OsSBEIIb%2C SBEIIb;Oryzabase Gene Name Synonym(s)=starch branching enzyme3%2C starch branching enzyme 3%2C Starch branching enzyme III%2C Starch branching enzyme-3%2C starch branching enzyme IIb%2C branching enzyme-3%2C Q-enzyme IIa%2C starch Branching enzyme isoform Type B%2C Branching enzyme isoform Type B%2C BE isoform type B;Note=Starch branching enzyme 3%2C Starch synthesis;Transcript_evidence=D16201;ORF_evidence=Q6H6P8;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: glycogen biosynthetic process (GO:0005978),Molecular Function: catalytic activity (GO:0003824),Molecular Function: 1%2C4-alpha-glucan branching enzyme activity (GO:0003844),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 13 (IPR015902),1%2C4-alpha-glucan-branching enzyme%2C GlgB (IPR006407),Immunoglobulin-like fold (IPR013783),Immunoglobulin E-set (IPR014756),Glycoside hydrolase%2C family 13%2C N-terminal (IPR004193),Glycoside hydrolase superfamily (IPR017853),Glycoside hydrolase%2C catalytic domain (IPR013781),Glycosyl hydrolase%2C family 13%2C catalytic domain (IPR006047),Glycosyl hydrolase%2C family 13%2C subfamily%2C catalytic domain (IPR006589),Glycosyl hydrolase%2C family 13%2C all-beta (IPR013780),Alpha-amylase/branching enzyme%2C C-terminal all beta (IPR006048);Manual Curation=November 25%2C 2015;Literature_PMID=22937009,20018713,8360192;Oryzabase=503;TENOR=Os02t0528200-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	19367003	19367127	.	-	.	Parent=Os02t0528200-01
Chr02	irgsp1_rep	CDS	19366852	19367002	.	-	0	Parent=Os02t0528200-01
Chr02	irgsp1_rep	CDS	19366566	19366697	.	-	2	Parent=Os02t0528200-01
Chr02	irgsp1_rep	CDS	19365959	19366166	.	-	2	Parent=Os02t0528200-01
Chr02	irgsp1_rep	CDS	19365134	19365232	.	-	1	Parent=Os02t0528200-01
Chr02	irgsp1_rep	CDS	19365004	19365046	.	-	1	Parent=Os02t0528200-01
Chr02	irgsp1_rep	CDS	19364744	19364803	.	-	0	Parent=Os02t0528200-01
Chr02	irgsp1_rep	CDS	19364048	19364128	.	-	0	Parent=Os02t0528200-01
Chr02	irgsp1_rep	CDS	19363847	19363963	.	-	0	Parent=Os02t0528200-01
Chr02	irgsp1_rep	CDS	19363571	19363654	.	-	0	Parent=Os02t0528200-01
Chr02	irgsp1_rep	CDS	19362966	19363087	.	-	0	Parent=Os02t0528200-01
Chr02	irgsp1_rep	CDS	19362521	19362640	.	-	1	Parent=Os02t0528200-01
Chr02	irgsp1_rep	CDS	19361340	19361469	.	-	1	Parent=Os02t0528200-01
Chr02	irgsp1_rep	CDS	19361132	19361242	.	-	0	Parent=Os02t0528200-01
Chr02	irgsp1_rep	CDS	19360863	19360991	.	-	0	Parent=Os02t0528200-01
Chr02	irgsp1_rep	CDS	19359409	19359512	.	-	0	Parent=Os02t0528200-01
Chr02	irgsp1_rep	CDS	19358778	19358922	.	-	1	Parent=Os02t0528200-01
Chr02	irgsp1_rep	CDS	19358176	19358323	.	-	0	Parent=Os02t0528200-01
Chr02	irgsp1_rep	CDS	19357934	19358034	.	-	2	Parent=Os02t0528200-01
Chr02	irgsp1_rep	CDS	19357622	19357699	.	-	0	Parent=Os02t0528200-01
Chr02	irgsp1_rep	CDS	19356965	19357120	.	-	0	Parent=Os02t0528200-01
Chr02	irgsp1_rep	CDS	19356265	19356339	.	-	0	Parent=Os02t0528200-01
Chr02	irgsp1_rep	CDS	19356103	19356186	.	-	0	Parent=Os02t0528200-01
Chr02	irgsp1_rep	three_prime_UTR	19355790	19356102	.	-	.	Parent=Os02t0528200-01
Chr02	irgsp1_rep	mRNA	19357053	19367025	.	+	.	ID=Os02t0528300-00;Name=Os02t0528300-00;Locus_id=Os02g0528300;Note=Hypothetical gene.;Transcript_evidence=tplb0001a06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0528300-00;KEGG=Os02t0528300-00
Chr02	irgsp1_rep	five_prime_UTR	19357053	19357112	.	+	.	Parent=Os02t0528300-00
Chr02	irgsp1_rep	five_prime_UTR	19357605	19357687	.	+	.	Parent=Os02t0528300-00
Chr02	irgsp1_rep	five_prime_UTR	19357921	19358034	.	+	.	Parent=Os02t0528300-00
Chr02	irgsp1_rep	five_prime_UTR	19358176	19358322	.	+	.	Parent=Os02t0528300-00
Chr02	irgsp1_rep	five_prime_UTR	19358777	19358926	.	+	.	Parent=Os02t0528300-00
Chr02	irgsp1_rep	five_prime_UTR	19359414	19359495	.	+	.	Parent=Os02t0528300-00
Chr02	irgsp1_rep	five_prime_UTR	19360842	19360980	.	+	.	Parent=Os02t0528300-00
Chr02	irgsp1_rep	five_prime_UTR	19361124	19361226	.	+	.	Parent=Os02t0528300-00
Chr02	irgsp1_rep	five_prime_UTR	19361321	19361451	.	+	.	Parent=Os02t0528300-00
Chr02	irgsp1_rep	five_prime_UTR	19362506	19362628	.	+	.	Parent=Os02t0528300-00
Chr02	irgsp1_rep	five_prime_UTR	19362947	19363072	.	+	.	Parent=Os02t0528300-00
Chr02	irgsp1_rep	five_prime_UTR	19363557	19363661	.	+	.	Parent=Os02t0528300-00
Chr02	irgsp1_rep	five_prime_UTR	19363855	19363949	.	+	.	Parent=Os02t0528300-00
Chr02	irgsp1_rep	five_prime_UTR	19364035	19364128	.	+	.	Parent=Os02t0528300-00
Chr02	irgsp1_rep	five_prime_UTR	19364744	19364837	.	+	.	Parent=Os02t0528300-00
Chr02	irgsp1_rep	five_prime_UTR	19365125	19365234	.	+	.	Parent=Os02t0528300-00
Chr02	irgsp1_rep	five_prime_UTR	19365953	19366180	.	+	.	Parent=Os02t0528300-00
Chr02	irgsp1_rep	five_prime_UTR	19366546	19366550	.	+	.	Parent=Os02t0528300-00
Chr02	irgsp1_rep	CDS	19366551	19366701	.	+	0	Parent=Os02t0528300-00
Chr02	irgsp1_rep	CDS	19366848	19366960	.	+	2	Parent=Os02t0528300-00
Chr02	irgsp1_rep	three_prime_UTR	19366961	19367025	.	+	.	Parent=Os02t0528300-00
Chr02	irgsp1_rep	mRNA	19376511	19385887	.	+	.	ID=Os02t0528500-01;Name=Os02t0528500-01;Locus_id=Os02g0528500;Note=Nucleic acid-binding%2C OB-fold domain containing protein.;Transcript_evidence=AK063979 (DDBJ%2C Best hit);ORF_evidence=Q8GSD3 (UniProt);InterPro=Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=001-124-C10;TENOR=Os02t0528500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	19376511	19376599	.	+	.	Parent=Os02t0528500-01
Chr02	irgsp1_rep	five_prime_UTR	19376685	19376774	.	+	.	Parent=Os02t0528500-01
Chr02	irgsp1_rep	five_prime_UTR	19376861	19376930	.	+	.	Parent=Os02t0528500-01
Chr02	irgsp1_rep	five_prime_UTR	19377011	19377061	.	+	.	Parent=Os02t0528500-01
Chr02	irgsp1_rep	five_prime_UTR	19383103	19383136	.	+	.	Parent=Os02t0528500-01
Chr02	irgsp1_rep	CDS	19383137	19383389	.	+	0	Parent=Os02t0528500-01
Chr02	irgsp1_rep	CDS	19383472	19383623	.	+	2	Parent=Os02t0528500-01
Chr02	irgsp1_rep	three_prime_UTR	19383624	19383871	.	+	.	Parent=Os02t0528500-01
Chr02	irgsp1_rep	three_prime_UTR	19383942	19384020	.	+	.	Parent=Os02t0528500-01
Chr02	irgsp1_rep	three_prime_UTR	19384099	19384219	.	+	.	Parent=Os02t0528500-01
Chr02	irgsp1_rep	three_prime_UTR	19384311	19384465	.	+	.	Parent=Os02t0528500-01
Chr02	irgsp1_rep	three_prime_UTR	19384553	19385078	.	+	.	Parent=Os02t0528500-01
Chr02	irgsp1_rep	three_prime_UTR	19385180	19385259	.	+	.	Parent=Os02t0528500-01
Chr02	irgsp1_rep	three_prime_UTR	19385352	19385432	.	+	.	Parent=Os02t0528500-01
Chr02	irgsp1_rep	three_prime_UTR	19385498	19385887	.	+	.	Parent=Os02t0528500-01
Chr02	irgsp1_rep	mRNA	19376552	19385890	.	+	.	ID=Os02t0528500-02;Name=Os02t0528500-02;Locus_id=Os02g0528500;Note=Nucleic acid-binding%2C OB-fold-like domain containing protein.;Transcript_evidence=AK102946 (DDBJ%2C Best hit);ORF_evidence=Q8GSD3 (UniProt);InterPro=Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=J033114P19;TENOR=Os02t0528500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	19376552	19376599	.	+	.	Parent=Os02t0528500-02
Chr02	irgsp1_rep	five_prime_UTR	19376685	19376774	.	+	.	Parent=Os02t0528500-02
Chr02	irgsp1_rep	five_prime_UTR	19376861	19376930	.	+	.	Parent=Os02t0528500-02
Chr02	irgsp1_rep	five_prime_UTR	19377011	19377061	.	+	.	Parent=Os02t0528500-02
Chr02	irgsp1_rep	five_prime_UTR	19383204	19383389	.	+	.	Parent=Os02t0528500-02
Chr02	irgsp1_rep	five_prime_UTR	19383472	19383696	.	+	.	Parent=Os02t0528500-02
Chr02	irgsp1_rep	CDS	19383697	19383808	.	+	0	Parent=Os02t0528500-02
Chr02	irgsp1_rep	CDS	19383942	19384020	.	+	2	Parent=Os02t0528500-02
Chr02	irgsp1_rep	CDS	19384099	19384219	.	+	1	Parent=Os02t0528500-02
Chr02	irgsp1_rep	CDS	19384311	19384465	.	+	0	Parent=Os02t0528500-02
Chr02	irgsp1_rep	CDS	19384553	19384616	.	+	1	Parent=Os02t0528500-02
Chr02	irgsp1_rep	three_prime_UTR	19384617	19385078	.	+	.	Parent=Os02t0528500-02
Chr02	irgsp1_rep	three_prime_UTR	19385180	19385259	.	+	.	Parent=Os02t0528500-02
Chr02	irgsp1_rep	three_prime_UTR	19385352	19385432	.	+	.	Parent=Os02t0528500-02
Chr02	irgsp1_rep	three_prime_UTR	19385498	19385890	.	+	.	Parent=Os02t0528500-02
Chr02	irgsp1_rep	mRNA	19390540	19392792	.	-	.	ID=Os02t0528550-00;Name=Os02t0528550-00;Locus_id=Os02g0528550;Note=Hypothetical conserved gene.;Transcript_evidence=CT837755 (DDBJ%2C Best hit);ORF_evidence=B8AJ00 (UniProt);TENOR=Os02t0528550-00;KEGG=Os02t0528550-00
Chr02	irgsp1_rep	five_prime_UTR	19391830	19392792	.	-	.	Parent=Os02t0528550-00
Chr02	irgsp1_rep	five_prime_UTR	19391369	19391815	.	-	.	Parent=Os02t0528550-00
Chr02	irgsp1_rep	CDS	19391204	19391368	.	-	0	Parent=Os02t0528550-00
Chr02	irgsp1_rep	three_prime_UTR	19390540	19391203	.	-	.	Parent=Os02t0528550-00
Chr02	irgsp1_rep	mRNA	19389555	19389794	.	+	.	ID=Os02t0528750-00;Name=Os02t0528750-00;Locus_id=Os02g0528750;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8AJ00 (UniProt);TENOR=Os02t0528750-00
Chr02	irgsp1_rep	CDS	19389555	19389794	.	+	0	Parent=Os02t0528750-00
Chr02	irgsp1_rep	mRNA	19406608	19420786	.	-	.	ID=Os02t0528900-01;Name=Os02t0528900-01;Locus_id=Os02g0528900;CGSNL Gene Symbol=PDR2;CGSNL Gene Name=PLEIOTROPIC DRUG RESISTANCE 2;Oryzabase Gene Symbol Synonym(s)=ABCG41%2C OsABCG41%2C OsPDR2%2C OsABCG41_1%2C OsABCG41_2;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 41%2C pleiotropic drug resistance 2;Note=Similar to PDR-like ABC transporter.;Transcript_evidence=AK105293 (DDBJ%2C Best hit);ORF_evidence=Q8GU83 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=ATPase%2C AAA-type%2C core (IPR003959);NIAS_FLcDNA=001-116-G09;Oryzabase=12015;TENOR=Os02t0528900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	19420761	19420786	.	-	.	Parent=Os02t0528900-01
Chr02	irgsp1_rep	CDS	19420682	19420760	.	-	0	Parent=Os02t0528900-01
Chr02	irgsp1_rep	CDS	19420180	19420675	.	-	2	Parent=Os02t0528900-01
Chr02	irgsp1_rep	CDS	19420016	19420100	.	-	1	Parent=Os02t0528900-01
Chr02	irgsp1_rep	CDS	19419687	19419846	.	-	0	Parent=Os02t0528900-01
Chr02	irgsp1_rep	CDS	19419520	19419599	.	-	2	Parent=Os02t0528900-01
Chr02	irgsp1_rep	CDS	19414028	19414036	.	-	0	Parent=Os02t0528900-01
Chr02	irgsp1_rep	three_prime_UTR	19413974	19414027	.	-	.	Parent=Os02t0528900-01
Chr02	irgsp1_rep	three_prime_UTR	19413782	19413872	.	-	.	Parent=Os02t0528900-01
Chr02	irgsp1_rep	three_prime_UTR	19413037	19413338	.	-	.	Parent=Os02t0528900-01
Chr02	irgsp1_rep	three_prime_UTR	19412340	19412470	.	-	.	Parent=Os02t0528900-01
Chr02	irgsp1_rep	three_prime_UTR	19412189	19412332	.	-	.	Parent=Os02t0528900-01
Chr02	irgsp1_rep	three_prime_UTR	19411333	19411646	.	-	.	Parent=Os02t0528900-01
Chr02	irgsp1_rep	three_prime_UTR	19410838	19410998	.	-	.	Parent=Os02t0528900-01
Chr02	irgsp1_rep	three_prime_UTR	19410599	19410702	.	-	.	Parent=Os02t0528900-01
Chr02	irgsp1_rep	three_prime_UTR	19410349	19410502	.	-	.	Parent=Os02t0528900-01
Chr02	irgsp1_rep	three_prime_UTR	19409923	19410207	.	-	.	Parent=Os02t0528900-01
Chr02	irgsp1_rep	three_prime_UTR	19409394	19409726	.	-	.	Parent=Os02t0528900-01
Chr02	irgsp1_rep	three_prime_UTR	19409099	19409251	.	-	.	Parent=Os02t0528900-01
Chr02	irgsp1_rep	three_prime_UTR	19408961	19409081	.	-	.	Parent=Os02t0528900-01
Chr02	irgsp1_rep	three_prime_UTR	19408269	19408352	.	-	.	Parent=Os02t0528900-01
Chr02	irgsp1_rep	three_prime_UTR	19407129	19407262	.	-	.	Parent=Os02t0528900-01
Chr02	irgsp1_rep	three_prime_UTR	19406608	19406908	.	-	.	Parent=Os02t0528900-01
Chr02	irgsp1_rep	mRNA	19437743	19442066	.	+	.	ID=Os02t0529400-01;Name=Os02t0529400-01;Locus_id=Os02g0529400;CGSNL Gene Symbol=NIN3;CGSNL Gene Name=NEUTRAL/ALKALINE INVERTASE 3;Oryzabase Gene Symbol Synonym(s)=OsNIN3;Oryzabase Gene Name Synonym(s)=neutral/alkaline invertase 3;Note=Plant neutral invertase family protein.;Transcript_evidence=AK121301 (DDBJ%2C Best hit);ORF_evidence=A2RPC0 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Plant neutral invertase (IPR006937),Six-hairpin glycosidase-like (IPR008928);NIAS_FLcDNA=J023110M10;Oryzabase=14668;Expression=AK121301;TENOR=Os02t0529400-01;KEGG=Os02t0529400-01
Chr02	irgsp1_rep	five_prime_UTR	19437743	19437840	.	+	.	Parent=Os02t0529400-01
Chr02	irgsp1_rep	five_prime_UTR	19438078	19438107	.	+	.	Parent=Os02t0529400-01
Chr02	irgsp1_rep	CDS	19438108	19438698	.	+	0	Parent=Os02t0529400-01
Chr02	irgsp1_rep	CDS	19439164	19439329	.	+	0	Parent=Os02t0529400-01
Chr02	irgsp1_rep	CDS	19439422	19439633	.	+	2	Parent=Os02t0529400-01
Chr02	irgsp1_rep	CDS	19440709	19441202	.	+	0	Parent=Os02t0529400-01
Chr02	irgsp1_rep	CDS	19441288	19441336	.	+	1	Parent=Os02t0529400-01
Chr02	irgsp1_rep	CDS	19441492	19441800	.	+	0	Parent=Os02t0529400-01
Chr02	irgsp1_rep	three_prime_UTR	19441801	19442066	.	+	.	Parent=Os02t0529400-01
Chr02	irgsp1_rep	mRNA	19440660	19442080	.	+	.	ID=Os02t0529400-02;Name=Os02t0529400-02;Locus_id=Os02g0529400;CGSNL Gene Symbol=NIN3;CGSNL Gene Name=NEUTRAL/ALKALINE INVERTASE 3;Oryzabase Gene Symbol Synonym(s)=OsNIN3;Oryzabase Gene Name Synonym(s)=neutral/alkaline invertase 3;Note=Similar to Alkaline/neutral invertase.;Transcript_evidence=AK100373 (DDBJ%2C Best hit);ORF_evidence=O49890 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Plant neutral invertase (IPR006937),Six-hairpin glycosidase-like (IPR008928);NIAS_FLcDNA=J023084J15;Oryzabase=14668;Expression=AK100373;TENOR=Os02t0529400-02;KEGG=Os02t0529400-02
Chr02	irgsp1_rep	five_prime_UTR	19440660	19440708	.	+	.	Parent=Os02t0529400-02
Chr02	irgsp1_rep	CDS	19440709	19441202	.	+	0	Parent=Os02t0529400-02
Chr02	irgsp1_rep	CDS	19441288	19441336	.	+	1	Parent=Os02t0529400-02
Chr02	irgsp1_rep	CDS	19441492	19441800	.	+	0	Parent=Os02t0529400-02
Chr02	irgsp1_rep	three_prime_UTR	19441801	19442080	.	+	.	Parent=Os02t0529400-02
Chr02	irgsp1_rep	mRNA	19438426	19441745	.	-	.	ID=Os02t0529450-00;Name=Os02t0529450-00;Locus_id=Os02g0529450;Note=Non-protein coding transcript.;Transcript_evidence=tplb0038i24 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os02t0529450-00
Chr02	irgsp1_rep	exon	19441477	19441745	.	-	.	Parent=Os02t0529450-00
Chr02	irgsp1_rep	exon	19440707	19441231	.	-	.	Parent=Os02t0529450-00
Chr02	irgsp1_rep	exon	19439417	19439631	.	-	.	Parent=Os02t0529450-00
Chr02	irgsp1_rep	exon	19439162	19439324	.	-	.	Parent=Os02t0529450-00
Chr02	irgsp1_rep	exon	19438426	19438696	.	-	.	Parent=Os02t0529450-00
Chr02	irgsp1_rep	mRNA	19444035	19446413	.	+	.	ID=Os02t0529500-01;Name=Os02t0529500-01;Locus_id=Os02g0529500;Note=Similar to SNAP25-like protein C (Fragment).;Transcript_evidence=AK069978 (DDBJ%2C Best hit);ORF_evidence=Q5EEP3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Target SNARE coiled-coil domain (IPR000727);NIAS_FLcDNA=J023037P10;Expression=AK069978;TENOR=Os02t0529500-01;KEGG=Os02t0529500-01
Chr02	irgsp1_rep	five_prime_UTR	19444035	19444146	.	+	.	Parent=Os02t0529500-01
Chr02	irgsp1_rep	five_prime_UTR	19444365	19444406	.	+	.	Parent=Os02t0529500-01
Chr02	irgsp1_rep	CDS	19444407	19444772	.	+	0	Parent=Os02t0529500-01
Chr02	irgsp1_rep	CDS	19445214	19445307	.	+	0	Parent=Os02t0529500-01
Chr02	irgsp1_rep	CDS	19445411	19445532	.	+	2	Parent=Os02t0529500-01
Chr02	irgsp1_rep	CDS	19445639	19445736	.	+	0	Parent=Os02t0529500-01
Chr02	irgsp1_rep	CDS	19446067	19446166	.	+	1	Parent=Os02t0529500-01
Chr02	irgsp1_rep	three_prime_UTR	19446167	19446413	.	+	.	Parent=Os02t0529500-01
Chr02	irgsp1_rep	mRNA	19451675	19453581	.	-	.	ID=Os02t0529600-01;Name=Os02t0529600-01;Locus_id=Os02g0529600;Oryzabase Gene Symbol Synonym(s)=OsGT2;Oryzabase Gene Name Synonym(s)=glycosyltransferase 2;Note=Similar to Xyloglucan 6-xylosyltransferase (EC 2.4.2.39) (AtXT1).;Transcript_evidence=AK100984 (DDBJ%2C Best hit);ORF_evidence=NP_196389.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=Galactosyl transferase (IPR008630);NIAS_FLcDNA=J023145D01;Oryzabase=15242;Expression=AK100984;TENOR=Os02t0529600-01;KEGG=Os02t0529600-01 (EC:2.4.2.39)
Chr02	irgsp1_rep	five_prime_UTR	19453303	19453581	.	-	.	Parent=Os02t0529600-01
Chr02	irgsp1_rep	CDS	19451860	19453302	.	-	0	Parent=Os02t0529600-01
Chr02	irgsp1_rep	three_prime_UTR	19451675	19451859	.	-	.	Parent=Os02t0529600-01
Chr02	irgsp1_rep	mRNA	19455171	19458350	.	-	.	ID=Os02t0529700-01;Name=Os02t0529700-01;Locus_id=Os02g0529700;Note=Similar to Acidic ribosomal protein P2a-4 (Fragment).;Transcript_evidence=AK120980 (DDBJ%2C Best hit);ORF_evidence=B6U978 (UniProt);GO=Biological Process: translational elongation (GO:0006414),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein 60S (IPR001813);NIAS_FLcDNA=J023042A15;Expression=AK120980;TENOR=Os02t0529700-01;KEGG=Os02t0529700-01
Chr02	irgsp1_rep	five_prime_UTR	19458245	19458350	.	-	.	Parent=Os02t0529700-01
Chr02	irgsp1_rep	five_prime_UTR	19457056	19457056	.	-	.	Parent=Os02t0529700-01
Chr02	irgsp1_rep	CDS	19456968	19457055	.	-	0	Parent=Os02t0529700-01
Chr02	irgsp1_rep	CDS	19455780	19456006	.	-	2	Parent=Os02t0529700-01
Chr02	irgsp1_rep	CDS	19455392	19455418	.	-	0	Parent=Os02t0529700-01
Chr02	irgsp1_rep	three_prime_UTR	19455171	19455391	.	-	.	Parent=Os02t0529700-01
Chr02	irgsp1_rep	mRNA	19459224	19463361	.	-	.	ID=Os02t0529800-00;Name=Os02t0529800-00;Locus_id=Os02g0529800;CGSNL Gene Symbol=CYP71Z5;CGSNL Gene Name=P-450 71Z5;Oryzabase Gene Symbol Synonym(s)=Oscyp71Z5;Oryzabase Gene Name Synonym(s)=CytoChrome P450 71Z5;Note=CytoChrome P450 family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XE29 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);Oryzabase=12347;TENOR=Os02t0529800-00;KEGG=Os02t0529800-00
Chr02	irgsp1_rep	CDS	19462447	19463361	.	-	0	Parent=Os02t0529800-00
Chr02	irgsp1_rep	CDS	19459224	19459850	.	-	0	Parent=Os02t0529800-00
Chr02	irgsp1_rep	mRNA	19459341	19463336	.	+	.	ID=Os02t0529850-00;Name=Os02t0529850-00;Locus_id=Os02g0529850;Note=Hypothetical protein.;Transcript_evidence=tplb0024g24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0529850-00
Chr02	irgsp1_rep	five_prime_UTR	19459341	19459852	.	+	.	Parent=Os02t0529850-00
Chr02	irgsp1_rep	five_prime_UTR	19462453	19462462	.	+	.	Parent=Os02t0529850-00
Chr02	irgsp1_rep	CDS	19462463	19463336	.	+	0	Parent=Os02t0529850-00
Chr02	irgsp1_rep	mRNA	19466313	19469350	.	-	.	ID=Os02t0529900-01;Name=Os02t0529900-01;Locus_id=Os02g0529900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK068598 (DDBJ%2C Best hit);ORF_evidence=A2X5K9 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013154H21;Expression=AK068598;TENOR=Os02t0529900-01;KEGG=Os02t0529900-01
Chr02	irgsp1_rep	five_prime_UTR	19469330	19469350	.	-	.	Parent=Os02t0529900-01
Chr02	irgsp1_rep	CDS	19466966	19469329	.	-	0	Parent=Os02t0529900-01
Chr02	irgsp1_rep	three_prime_UTR	19466313	19466965	.	-	.	Parent=Os02t0529900-01
Chr02	irgsp1_rep	mRNA	19472233	19486248	.	-	.	ID=Os02t0530100-01;Name=Os02t0530100-01;Locus_id=Os02g0530100;CGSNL Gene Symbol=CCH;CGSNL Gene Name=COPPER CHAPERONE HOMOLOG;Oryzabase Gene Symbol Synonym(s)=OsATX1%2C CCH%2C ATX1%2C OsHMP14%2C HMP14;Oryzabase Gene Name Synonym(s)=Anti-oxidant 1%2C copper chaperone homolog CCH%2C Heavy metal-associated protein 14;Note=Similar to C4-dicarboxylate transporter/malic acid transport protein.;Transcript_evidence=AK058520 (DDBJ%2C Best hit);ORF_evidence=B6SWN8 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);NIAS_FLcDNA=001-016-H06;Oryzabase=8922;TENOR=Os02t0530100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	19486164	19486248	.	-	.	Parent=Os02t0530100-01
Chr02	irgsp1_rep	CDS	19485858	19486163	.	-	0	Parent=Os02t0530100-01
Chr02	irgsp1_rep	CDS	19485593	19485754	.	-	0	Parent=Os02t0530100-01
Chr02	irgsp1_rep	CDS	19473062	19473137	.	-	0	Parent=Os02t0530100-01
Chr02	irgsp1_rep	CDS	19472450	19472760	.	-	2	Parent=Os02t0530100-01
Chr02	irgsp1_rep	three_prime_UTR	19472233	19472449	.	-	.	Parent=Os02t0530100-01
Chr02	irgsp1_rep	mRNA	19472237	19473608	.	-	.	ID=Os02t0530100-02;Name=Os02t0530100-02;Locus_id=Os02g0530100;CGSNL Gene Symbol=CCH;CGSNL Gene Name=COPPER CHAPERONE HOMOLOG;Oryzabase Gene Symbol Synonym(s)=OsATX1%2C CCH%2C ATX1%2C OsHMP14%2C HMP14;Oryzabase Gene Name Synonym(s)=Anti-oxidant 1%2C copper chaperone homolog CCH%2C Heavy metal-associated protein 14;Note=Copper chaperone homolog CCH.;Transcript_evidence=AK121599 (DDBJ%2C Best hit);ORF_evidence=Q9SE04 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);NIAS_FLcDNA=J033039M13;Oryzabase=8922;Expression=AK121599;TENOR=Os02t0530100-02;KEGG=Os02t0530100-02
Chr02	irgsp1_rep	five_prime_UTR	19473459	19473608	.	-	.	Parent=Os02t0530100-02
Chr02	irgsp1_rep	CDS	19473447	19473458	.	-	0	Parent=Os02t0530100-02
Chr02	irgsp1_rep	CDS	19473062	19473137	.	-	0	Parent=Os02t0530100-02
Chr02	irgsp1_rep	CDS	19472450	19472760	.	-	2	Parent=Os02t0530100-02
Chr02	irgsp1_rep	three_prime_UTR	19472237	19472449	.	-	.	Parent=Os02t0530100-02
Chr02	irgsp1_rep	mRNA	19488188	19488930	.	+	.	ID=Os02t0530300-01;Name=Os02t0530300-01;Locus_id=Os02g0530300;CGSNL Gene Symbol=SAP5;CGSNL Gene Name=STRESS ASSOCIATED PROTEIN GENE 5;Oryzabase Gene Symbol Synonym(s)=OsSAP5;Oryzabase Gene Name Synonym(s)=stress-associated protein 5;Note=Zinc finger%2C AN1-type domain containing protein.;Transcript_evidence=AK063708 (DDBJ%2C Best hit);ORF_evidence=Q6H754 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C AN1-type (IPR000058),Zinc finger%2C A20-type (IPR002653);NIAS_FLcDNA=001-120-B07;Oryzabase=18183;Expression=AK063708;TENOR=Os02t0530300-01;KEGG=Os02t0530300-01
Chr02	irgsp1_rep	five_prime_UTR	19488188	19488310	.	+	.	Parent=Os02t0530300-01
Chr02	irgsp1_rep	CDS	19488311	19488775	.	+	0	Parent=Os02t0530300-01
Chr02	irgsp1_rep	three_prime_UTR	19488776	19488930	.	+	.	Parent=Os02t0530300-01
Chr02	irgsp1_rep	mRNA	19503594	19504609	.	+	.	ID=Os02t0530500-01;Name=Os02t0530500-01;Locus_id=Os02g0530500;Note=Similar to ZPR3 (LITTLE ZIPPER 3)%3B protein binding.;Transcript_evidence=AK107488 (DDBJ%2C Best hit);ORF_evidence=NP_190845.1 (RefSeq);NIAS_FLcDNA=002-129-C11;Expression=AK107488;TENOR=Os02t0530500-01;KEGG=Os02t0530500-01
Chr02	irgsp1_rep	five_prime_UTR	19503594	19503782	.	+	.	Parent=Os02t0530500-01
Chr02	irgsp1_rep	five_prime_UTR	19504080	19504082	.	+	.	Parent=Os02t0530500-01
Chr02	irgsp1_rep	CDS	19504083	19504343	.	+	0	Parent=Os02t0530500-01
Chr02	irgsp1_rep	three_prime_UTR	19504344	19504609	.	+	.	Parent=Os02t0530500-01
Chr02	irgsp1_rep	mRNA	19509839	19514935	.	-	.	ID=Os02t0530600-01;Name=Os02t0530600-01;Locus_id=Os02g0530600;RAP-DB Gene Symbol Synonym(s)=OsPARP3;RAP-DB Gene Name Synonym(s)=poly(ADP-ribose) polymerase 3;Oryzabase Gene Symbol Synonym(s)=OsEnS-38%2C OsPARP3%2C PARP3;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 38%2C poly(ADP-ribose) polymerase 3;Note=Poly(ADP-ribose) polymerase%2C Double-strand break (DSB) repair%2C Likely to be involved in the Ku-independent alternative non-homologous end-joining pathway (A-NHEJ pathway);Transcript_evidence=AK102681;ORF_evidence=Q0E0Q3;GO=Biological Process: protein ADP-ribosylation (GO:0006471),Molecular Function: NAD+ ADP-ribosyltransferase activity (GO:0003950);InterPro=PADR1 domain superfamily (IPR038650),BRCT domain superfamily (IPR036420),WGR domain superfamily (IPR036930),Poly(ADP-ribose) polymerase%2C regulatory domain superfamily (IPR036616),PADR1 domain (IPR012982),BRCT domain (IPR001357),WGR domain (IPR008893),Poly(ADP-ribose) polymerase%2C regulatory domain (IPR004102),Poly(ADP-ribose) polymerase%2C catalytic domain (IPR012317);NIAS_FLcDNA=J033102J07;Manual Curation=June 8%2C 2020;Literature_PMID=27462908;Oryzabase=18369;Expression=AK102681;TENOR=Os02t0530600-01;KEGG=Os02t0530600-01
Chr02	irgsp1_rep	five_prime_UTR	19514883	19514935	.	-	.	Parent=Os02t0530600-01
Chr02	irgsp1_rep	CDS	19514880	19514882	.	-	0	Parent=Os02t0530600-01
Chr02	irgsp1_rep	CDS	19513987	19514333	.	-	0	Parent=Os02t0530600-01
Chr02	irgsp1_rep	CDS	19513694	19513889	.	-	1	Parent=Os02t0530600-01
Chr02	irgsp1_rep	CDS	19513493	19513600	.	-	0	Parent=Os02t0530600-01
Chr02	irgsp1_rep	CDS	19513352	19513409	.	-	0	Parent=Os02t0530600-01
Chr02	irgsp1_rep	CDS	19513193	19513262	.	-	2	Parent=Os02t0530600-01
Chr02	irgsp1_rep	CDS	19512867	19513041	.	-	1	Parent=Os02t0530600-01
Chr02	irgsp1_rep	CDS	19512653	19512786	.	-	0	Parent=Os02t0530600-01
Chr02	irgsp1_rep	CDS	19512301	19512541	.	-	1	Parent=Os02t0530600-01
Chr02	irgsp1_rep	CDS	19512089	19512216	.	-	0	Parent=Os02t0530600-01
Chr02	irgsp1_rep	CDS	19511881	19511957	.	-	1	Parent=Os02t0530600-01
Chr02	irgsp1_rep	CDS	19511629	19511789	.	-	2	Parent=Os02t0530600-01
Chr02	irgsp1_rep	CDS	19511315	19511524	.	-	0	Parent=Os02t0530600-01
Chr02	irgsp1_rep	CDS	19511103	19511205	.	-	0	Parent=Os02t0530600-01
Chr02	irgsp1_rep	CDS	19510903	19510985	.	-	2	Parent=Os02t0530600-01
Chr02	irgsp1_rep	CDS	19510667	19510816	.	-	0	Parent=Os02t0530600-01
Chr02	irgsp1_rep	CDS	19510362	19510544	.	-	0	Parent=Os02t0530600-01
Chr02	irgsp1_rep	CDS	19510181	19510249	.	-	0	Parent=Os02t0530600-01
Chr02	irgsp1_rep	three_prime_UTR	19509839	19510180	.	-	.	Parent=Os02t0530600-01
Chr02	irgsp1_rep	mRNA	19509828	19511468	.	-	.	ID=Os02t0530600-02;Name=Os02t0530600-02;Locus_id=Os02g0530600;Oryzabase Gene Symbol Synonym(s)=OsEnS-38%2C OsPARP3%2C PARP3;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 38%2C poly(ADP-ribose) polymerase 3;Note=Similar to Poly.;Transcript_evidence=AK105277 (DDBJ%2C Best hit);ORF_evidence=B7ETH1 (UniProt);GO=Molecular Function: NAD+ ADP-ribosyltransferase activity (GO:0003950);InterPro=Poly(ADP-ribose) polymerase%2C catalytic domain (IPR012317);NIAS_FLcDNA=001-116-B03;Oryzabase=18369;Expression=AK105277;TENOR=Os02t0530600-02;KEGG=Os02t0530600-02 (EC:2.4.2.30)
Chr02	irgsp1_rep	five_prime_UTR	19511468	19511468	.	-	.	Parent=Os02t0530600-02
Chr02	irgsp1_rep	CDS	19511315	19511467	.	-	0	Parent=Os02t0530600-02
Chr02	irgsp1_rep	CDS	19511103	19511205	.	-	0	Parent=Os02t0530600-02
Chr02	irgsp1_rep	CDS	19510903	19510985	.	-	2	Parent=Os02t0530600-02
Chr02	irgsp1_rep	CDS	19510667	19510816	.	-	0	Parent=Os02t0530600-02
Chr02	irgsp1_rep	CDS	19510362	19510544	.	-	0	Parent=Os02t0530600-02
Chr02	irgsp1_rep	CDS	19510181	19510249	.	-	0	Parent=Os02t0530600-02
Chr02	irgsp1_rep	three_prime_UTR	19509828	19510180	.	-	.	Parent=Os02t0530600-02
Chr02	irgsp1_rep	mRNA	19549737	19556064	.	+	.	ID=Os02t0531200-01;Name=Os02t0531200-01;Locus_id=Os02g0531200;Note=Bile acid:sodium symporter family protein.;Transcript_evidence=AK064103 (DDBJ%2C Best hit);ORF_evidence=B6TYA0 (UniProt);GO=Biological Process: sodium ion transport (GO:0006814),Cellular Component: membrane (GO:0016020),Molecular Function: bile acid:sodium symporter activity (GO:0008508);InterPro=Bile acid:sodium symporter (IPR002657);NIAS_FLcDNA=002-101-B12;Expression=AK064103;TENOR=Os02t0531200-01;KEGG=Os02t0531200-01
Chr02	irgsp1_rep	five_prime_UTR	19549737	19549787	.	+	.	Parent=Os02t0531200-01
Chr02	irgsp1_rep	CDS	19549788	19549985	.	+	0	Parent=Os02t0531200-01
Chr02	irgsp1_rep	CDS	19550089	19550188	.	+	0	Parent=Os02t0531200-01
Chr02	irgsp1_rep	CDS	19550621	19550728	.	+	2	Parent=Os02t0531200-01
Chr02	irgsp1_rep	CDS	19550799	19550866	.	+	2	Parent=Os02t0531200-01
Chr02	irgsp1_rep	CDS	19551172	19551250	.	+	0	Parent=Os02t0531200-01
Chr02	irgsp1_rep	CDS	19551380	19551438	.	+	2	Parent=Os02t0531200-01
Chr02	irgsp1_rep	CDS	19551544	19551612	.	+	0	Parent=Os02t0531200-01
Chr02	irgsp1_rep	CDS	19552183	19552296	.	+	0	Parent=Os02t0531200-01
Chr02	irgsp1_rep	CDS	19552946	19552967	.	+	0	Parent=Os02t0531200-01
Chr02	irgsp1_rep	CDS	19553061	19553128	.	+	2	Parent=Os02t0531200-01
Chr02	irgsp1_rep	CDS	19554236	19554321	.	+	0	Parent=Os02t0531200-01
Chr02	irgsp1_rep	CDS	19554826	19554955	.	+	1	Parent=Os02t0531200-01
Chr02	irgsp1_rep	CDS	19555638	19555739	.	+	0	Parent=Os02t0531200-01
Chr02	irgsp1_rep	CDS	19555817	19555885	.	+	0	Parent=Os02t0531200-01
Chr02	irgsp1_rep	three_prime_UTR	19555886	19556064	.	+	.	Parent=Os02t0531200-01
Chr02	irgsp1_rep	mRNA	19557821	19559592	.	+	.	ID=Os02t0531300-01;Name=Os02t0531300-01;Locus_id=Os02g0531300;Note=Hypothetical protein.;Transcript_evidence=AK068180 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013135E14;Expression=AK068180;TENOR=Os02t0531300-01;KEGG=Os02t0531300-01
Chr02	irgsp1_rep	five_prime_UTR	19557821	19558286	.	+	.	Parent=Os02t0531300-01
Chr02	irgsp1_rep	five_prime_UTR	19558457	19558786	.	+	.	Parent=Os02t0531300-01
Chr02	irgsp1_rep	CDS	19558787	19559125	.	+	0	Parent=Os02t0531300-01
Chr02	irgsp1_rep	three_prime_UTR	19559126	19559592	.	+	.	Parent=Os02t0531300-01
Chr02	irgsp1_rep	mRNA	19564359	19565207	.	-	.	ID=Os02t0531450-01;Name=Os02t0531450-01;Locus_id=Os02g0531450;Note=Conserved hypothetical protein.;Transcript_evidence=AK242157 (DDBJ%2C Best hit);ORF_evidence=NP_001173005.1 (RefSeq);NIAS_FLcDNA=J075155C16;TENOR=Os02t0531450-01;KEGG=Os02t0531450-01
Chr02	irgsp1_rep	five_prime_UTR	19564851	19565207	.	-	.	Parent=Os02t0531450-01
Chr02	irgsp1_rep	CDS	19564539	19564850	.	-	0	Parent=Os02t0531450-01
Chr02	irgsp1_rep	three_prime_UTR	19564359	19564538	.	-	.	Parent=Os02t0531450-01
Chr02	irgsp1_rep	mRNA	19567046	19568968	.	-	.	ID=Os02t0531600-01;Name=Os02t0531600-01;Locus_id=Os02g0531600;RAP-DB Gene Symbol Synonym(s)=RCN2;RAP-DB Gene Name Synonym(s)=rice TERMINAL FLOWER 1/CENTRORADIALIS homolog 2;CGSNL Gene Symbol=RCN2;CGSNL Gene Name=RICE TERMINAL FLOWER 1/CENTRORADIALIS HOMOLOG 2;Oryzabase Gene Symbol Synonym(s)=Rcn2%2C OsRCN2;Oryzabase Gene Name Synonym(s)=RICE CENTRORADIALIS 2;Note=TFL1/CEN ortholog%2C Phosphatidylethanolamine-binding protein%2C PEBP family protein%2C Control of the phase transition of meristem%2C Control of flowering time;Transcript_evidence=AK243046;ORF_evidence=Q6ESF8;InterPro=PEBP-like superfamily (IPR036610),Phosphatidylethanolamine-binding protein (IPR008914),Phosphatidylethanolamine-binding protein%2C eukaryotic (IPR035810),Phosphatidylethanolamine-binding%2C conserved site (IPR001858);NIAS_FLcDNA=J100010A16;Manual Curation=October 18%2C 2017;Literature_PMID=16170456,12148532;Oryzabase=6603;TENOR=Os02t0531600-01;KEGG=Os02t0531600-01
Chr02	irgsp1_rep	five_prime_UTR	19568797	19568968	.	-	.	Parent=Os02t0531600-01
Chr02	irgsp1_rep	CDS	19568596	19568796	.	-	0	Parent=Os02t0531600-01
Chr02	irgsp1_rep	CDS	19568417	19568478	.	-	0	Parent=Os02t0531600-01
Chr02	irgsp1_rep	CDS	19568115	19568155	.	-	1	Parent=Os02t0531600-01
Chr02	irgsp1_rep	CDS	19567632	19567849	.	-	2	Parent=Os02t0531600-01
Chr02	irgsp1_rep	three_prime_UTR	19567046	19567631	.	-	.	Parent=Os02t0531600-01
Chr02	irgsp1_rep	mRNA	19581973	19582474	.	-	.	ID=Os02t0531900-00;Name=Os02t0531900-00;Locus_id=Os02g0531900;Note=Hypothetical conserved gene.;Transcript_evidence=EU945030 (DDBJ);ORF_evidence=B9F0D0 (UniProt);TENOR=Os02t0531900-00;KEGG=Os02t0531900-00
Chr02	irgsp1_rep	CDS	19582160	19582474	.	-	0	Parent=Os02t0531900-00
Chr02	irgsp1_rep	CDS	19581995	19582048	.	-	0	Parent=Os02t0531900-00
Chr02	irgsp1_rep	three_prime_UTR	19581973	19581994	.	-	.	Parent=Os02t0531900-00
Chr02	irgsp1_rep	mRNA	19591287	19591844	.	+	.	ID=Os02t0532300-01;Name=Os02t0532300-01;Locus_id=Os02g0532300;Note=Hypothetical conserved gene.;Transcript_evidence=AK107958 (DDBJ%2C Best hit);ORF_evidence=Q6ESF2 (UniProt);NIAS_FLcDNA=002-135-C06;Expression=AK107958;TENOR=Os02t0532300-01;KEGG=Os02t0532300-01
Chr02	irgsp1_rep	five_prime_UTR	19591287	19591504	.	+	.	Parent=Os02t0532300-01
Chr02	irgsp1_rep	CDS	19591505	19591837	.	+	0	Parent=Os02t0532300-01
Chr02	irgsp1_rep	three_prime_UTR	19591838	19591844	.	+	.	Parent=Os02t0532300-01
Chr02	irgsp1_rep	mRNA	19591391	19595510	.	+	.	ID=Os02t0532300-02;Name=Os02t0532300-02;Locus_id=Os02g0532300;Note=Alpha/beta hydrolase fold-1 domain containing protein.;Transcript_evidence=AK061527 (DDBJ%2C Best hit),AK099017 (DDBJ%2C Best hit),AK104452 (DDBJ%2C Best hit),AK119210 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=006-310-D10,J013119A16,006-212-H03,001-041-E04;TENOR=Os02t0532300-02
Chr02	irgsp1_rep	five_prime_UTR	19591391	19591504	.	+	.	Parent=Os02t0532300-02
Chr02	irgsp1_rep	CDS	19591505	19591598	.	+	0	Parent=Os02t0532300-02
Chr02	irgsp1_rep	CDS	19594005	19594258	.	+	2	Parent=Os02t0532300-02
Chr02	irgsp1_rep	CDS	19594350	19594561	.	+	0	Parent=Os02t0532300-02
Chr02	irgsp1_rep	CDS	19594665	19594926	.	+	1	Parent=Os02t0532300-02
Chr02	irgsp1_rep	CDS	19595038	19595334	.	+	0	Parent=Os02t0532300-02
Chr02	irgsp1_rep	three_prime_UTR	19595335	19595510	.	+	.	Parent=Os02t0532300-02
Chr02	irgsp1_rep	mRNA	19592454	19593279	.	+	.	ID=Os02t0532401-00;Name=Os02t0532401-00;Locus_id=Os02g0532401;Note=Hypothetical gene.;Transcript_evidence=CT835366 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os02t0532401-00;KEGG=Os02t0532401-00
Chr02	irgsp1_rep	five_prime_UTR	19592454	19592657	.	+	.	Parent=Os02t0532401-00
Chr02	irgsp1_rep	CDS	19592658	19592921	.	+	0	Parent=Os02t0532401-00
Chr02	irgsp1_rep	three_prime_UTR	19592922	19593279	.	+	.	Parent=Os02t0532401-00
Chr02	irgsp1_rep	mRNA	19597550	19598541	.	-	.	ID=Os02t0532500-01;Name=Os02t0532500-01;Locus_id=Os02g0532500;RAP-DB Gene Symbol Synonym(s)=OsGLP2-1;CGSNL Gene Symbol=GLP2-4;CGSNL Gene Name=GERMIN-LIKE PROTEIN 2-4;Oryzabase Gene Symbol Synonym(s)=OsGLP2-4%2C OsGLP2-1%2C GLP2-1;Oryzabase Gene Name Synonym(s)=Germin-like protein 2-4%2C german-like protein 2-1;Note=Germin-like protein%2C Fungal blast and bacterial blight resistance;Transcript_evidence=AK059817;ORF_evidence=Q6ESF0;GO=Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),RmlC-like jelly roll fold (IPR014710),RmlC-like cupin domain (IPR011051),Cupin 1 (IPR006045);NIAS_FLcDNA=006-205-C02;Manual Curation=September 30%2C 2016;Literature_PMID=27631432;Oryzabase=21422;Expression=AK059817;TENOR=Os02t0532500-01;KEGG=Os02t0532500-01
Chr02	irgsp1_rep	five_prime_UTR	19598481	19598541	.	-	.	Parent=Os02t0532500-01
Chr02	irgsp1_rep	CDS	19597791	19598480	.	-	0	Parent=Os02t0532500-01
Chr02	irgsp1_rep	three_prime_UTR	19597550	19597790	.	-	.	Parent=Os02t0532500-01
Chr02	irgsp1_rep	mRNA	19614070	19615072	.	+	.	ID=Os02t0532800-00;Name=Os02t0532800-00;Locus_id=Os02g0532800;Note=7TM GPCR%2C rhodopsin-like domain containing protein.;Transcript_evidence=CT837761 (DDBJ%2C Best hit);ORF_evidence=Q01JB4 (UniProt);TENOR=Os02t0532800-00;KEGG=Os02t0532800-00
Chr02	irgsp1_rep	five_prime_UTR	19614070	19614246	.	+	.	Parent=Os02t0532800-00
Chr02	irgsp1_rep	CDS	19614247	19614834	.	+	0	Parent=Os02t0532800-00
Chr02	irgsp1_rep	three_prime_UTR	19614835	19615072	.	+	.	Parent=Os02t0532800-00
Chr02	irgsp1_rep	mRNA	19619243	19623210	.	+	.	ID=Os02t0532900-01;Name=Os02t0532900-01;Locus_id=Os02g0532900;Note=Glycoside hydrolase%2C family 17 protein.;Transcript_evidence=AK073663 (DDBJ%2C Best hit);ORF_evidence=Q01IT5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J033046A21;Expression=AK073663;TENOR=Os02t0532900-01;KEGG=Os02t0532900-01
Chr02	irgsp1_rep	five_prime_UTR	19619243	19619365	.	+	.	Parent=Os02t0532900-01
Chr02	irgsp1_rep	CDS	19619366	19619450	.	+	0	Parent=Os02t0532900-01
Chr02	irgsp1_rep	CDS	19621101	19622134	.	+	2	Parent=Os02t0532900-01
Chr02	irgsp1_rep	CDS	19622872	19622928	.	+	0	Parent=Os02t0532900-01
Chr02	irgsp1_rep	three_prime_UTR	19622929	19623210	.	+	.	Parent=Os02t0532900-01
Chr02	irgsp1_rep	mRNA	19621249	19623214	.	+	.	ID=Os02t0532900-02;Name=Os02t0532900-02;Locus_id=Os02g0532900;Note=Similar to H0717B12.10 protein.;Transcript_evidence=AK072635 (DDBJ%2C Best hit);ORF_evidence=Q01IT5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J023133F15;Expression=AK072635;TENOR=Os02t0532900-02;KEGG=Os02t0532900-02
Chr02	irgsp1_rep	five_prime_UTR	19621249	19621249	.	+	.	Parent=Os02t0532900-02
Chr02	irgsp1_rep	CDS	19621250	19622134	.	+	0	Parent=Os02t0532900-02
Chr02	irgsp1_rep	CDS	19622872	19622928	.	+	0	Parent=Os02t0532900-02
Chr02	irgsp1_rep	three_prime_UTR	19622929	19623214	.	+	.	Parent=Os02t0532900-02
Chr02	irgsp1_rep	mRNA	19623488	19628801	.	-	.	ID=Os02t0533000-00;Name=Os02t0533000-00;Locus_id=Os02g0533000;Note=FeS cluster biogenesis domain containing protein.;Transcript_evidence=AK334365 (DDBJ);ORF_evidence=E4MY72 (UniProt);TENOR=Os02t0533000-00;KEGG=Os02t0533000-00
Chr02	irgsp1_rep	five_prime_UTR	19628671	19628801	.	-	.	Parent=Os02t0533000-00
Chr02	irgsp1_rep	CDS	19628245	19628670	.	-	0	Parent=Os02t0533000-00
Chr02	irgsp1_rep	CDS	19628027	19628134	.	-	0	Parent=Os02t0533000-00
Chr02	irgsp1_rep	CDS	19627823	19627923	.	-	0	Parent=Os02t0533000-00
Chr02	irgsp1_rep	CDS	19627488	19627559	.	-	1	Parent=Os02t0533000-00
Chr02	irgsp1_rep	CDS	19626933	19627005	.	-	1	Parent=Os02t0533000-00
Chr02	irgsp1_rep	CDS	19626771	19626836	.	-	0	Parent=Os02t0533000-00
Chr02	irgsp1_rep	CDS	19626560	19626652	.	-	0	Parent=Os02t0533000-00
Chr02	irgsp1_rep	CDS	19626312	19626377	.	-	0	Parent=Os02t0533000-00
Chr02	irgsp1_rep	CDS	19625977	19626119	.	-	0	Parent=Os02t0533000-00
Chr02	irgsp1_rep	CDS	19625316	19625402	.	-	1	Parent=Os02t0533000-00
Chr02	irgsp1_rep	CDS	19625169	19625232	.	-	1	Parent=Os02t0533000-00
Chr02	irgsp1_rep	CDS	19624798	19624941	.	-	0	Parent=Os02t0533000-00
Chr02	irgsp1_rep	CDS	19623788	19623928	.	-	0	Parent=Os02t0533000-00
Chr02	irgsp1_rep	three_prime_UTR	19623488	19623787	.	-	.	Parent=Os02t0533000-00
Chr02	irgsp1_rep	mRNA	19632434	19635224	.	+	.	ID=Os02t0533200-00;Name=Os02t0533200-00;Locus_id=Os02g0533200;Note=SOUL haem-binding protein domain containing protein.;Transcript_evidence=AK336284 (DDBJ);ORF_evidence=NP_001147650.1 (RefSeq);InterPro=SOUL haem-binding protein (IPR006917),Regulatory factor%2C effector%2C bacterial (IPR011256);TENOR=Os02t0533200-00;KEGG=Os02t0533200-00
Chr02	irgsp1_rep	CDS	19632434	19632692	.	+	0	Parent=Os02t0533200-00
Chr02	irgsp1_rep	CDS	19632805	19632875	.	+	2	Parent=Os02t0533200-00
Chr02	irgsp1_rep	CDS	19633010	19633111	.	+	0	Parent=Os02t0533200-00
Chr02	irgsp1_rep	CDS	19633232	19633336	.	+	0	Parent=Os02t0533200-00
Chr02	irgsp1_rep	CDS	19633471	19633606	.	+	0	Parent=Os02t0533200-00
Chr02	irgsp1_rep	CDS	19634784	19634893	.	+	2	Parent=Os02t0533200-00
Chr02	irgsp1_rep	CDS	19634987	19635067	.	+	0	Parent=Os02t0533200-00
Chr02	irgsp1_rep	three_prime_UTR	19635068	19635224	.	+	.	Parent=Os02t0533200-00
Chr02	irgsp1_rep	mRNA	19636276	19638854	.	+	.	ID=Os02t0533300-01;Name=Os02t0533300-01;Locus_id=Os02g0533300;CGSNL Gene Symbol=ALPHACA1;CGSNL Gene Name=ALPHA-CARBONIC ANHYDRASE 1;Oryzabase Gene Symbol Synonym(s)=OsalphaCA1%2C alphaCA1;Oryzabase Gene Name Synonym(s)=alpha-carbonic anhydrase 1;Note=Carbonic anhydrase%2C CAH1-like domain containing protein.;Transcript_evidence=AK241288 (DDBJ%2C Best hit);ORF_evidence=Q01IT4 (UniProt);GO=Biological Process: one-carbon metabolic process (GO:0006730),Molecular Function: carbonate dehydratase activity (GO:0004089),Molecular Function: zinc ion binding (GO:0008270);InterPro=Carbonic anhydrase%2C alpha-class%2C catalytic domain (IPR001148),Carbonic anhydrase%2C alpha-class%2C conserved site (IPR018338),Carbonic anhydrase%2C alpha-class (IPR023561);NIAS_FLcDNA=J065137F18;Oryzabase=21646;TENOR=Os02t0533300-01;KEGG=Os02t0533300-01 (EC:4.2.1.1)
Chr02	irgsp1_rep	five_prime_UTR	19636276	19636352	.	+	.	Parent=Os02t0533300-01
Chr02	irgsp1_rep	CDS	19636353	19636431	.	+	0	Parent=Os02t0533300-01
Chr02	irgsp1_rep	CDS	19636968	19637173	.	+	2	Parent=Os02t0533300-01
Chr02	irgsp1_rep	CDS	19637596	19637702	.	+	0	Parent=Os02t0533300-01
Chr02	irgsp1_rep	CDS	19637795	19637897	.	+	1	Parent=Os02t0533300-01
Chr02	irgsp1_rep	CDS	19638305	19638487	.	+	0	Parent=Os02t0533300-01
Chr02	irgsp1_rep	CDS	19638578	19638700	.	+	0	Parent=Os02t0533300-01
Chr02	irgsp1_rep	three_prime_UTR	19638701	19638854	.	+	.	Parent=Os02t0533300-01
Chr02	irgsp1_rep	mRNA	19644999	19646061	.	+	.	ID=Os02t0533700-01;Name=Os02t0533700-01;Locus_id=Os02g0533700;Note=Conserved hypothetical protein.;Transcript_evidence=AK240662 (DDBJ%2C Best hit);ORF_evidence=NP_001047031.1 (RefSeq);NIAS_FLcDNA=J023149G18;TENOR=Os02t0533700-01;KEGG=Os02t0533700-01
Chr02	irgsp1_rep	five_prime_UTR	19644999	19645039	.	+	.	Parent=Os02t0533700-01
Chr02	irgsp1_rep	CDS	19645040	19645684	.	+	0	Parent=Os02t0533700-01
Chr02	irgsp1_rep	three_prime_UTR	19645685	19646061	.	+	.	Parent=Os02t0533700-01
Chr02	irgsp1_rep	mRNA	19648496	19649478	.	-	.	ID=Os02t0533800-01;Name=Os02t0533800-01;Locus_id=Os02g0533800;Note=Similar to ATPase inhibitor.;Transcript_evidence=AK121139 (DDBJ%2C Best hit);ORF_evidence=NP_001147176.1 (RefSeq);NIAS_FLcDNA=J023077F13;Expression=AK121139;TENOR=Os02t0533800-01;KEGG=Os02t0533800-01
Chr02	irgsp1_rep	five_prime_UTR	19649365	19649478	.	-	.	Parent=Os02t0533800-01
Chr02	irgsp1_rep	CDS	19649191	19649364	.	-	0	Parent=Os02t0533800-01
Chr02	irgsp1_rep	CDS	19649007	19649102	.	-	0	Parent=Os02t0533800-01
Chr02	irgsp1_rep	CDS	19648846	19648872	.	-	0	Parent=Os02t0533800-01
Chr02	irgsp1_rep	three_prime_UTR	19648496	19648845	.	-	.	Parent=Os02t0533800-01
Chr02	irgsp1_rep	mRNA	19649913	19653378	.	+	.	ID=Os02t0533900-01;Name=Os02t0533900-01;Locus_id=Os02g0533900;CGSNL Gene Symbol=CPA1;CGSNL Gene Name=CARBAMOYLPUTRESCINE AMIDASE 1;Oryzabase Gene Symbol Synonym(s)=OsCPA1;Oryzabase Gene Name Synonym(s)=N-carbamoylputrescine amidase%2C N-carbamoyl-Put amidohydrolase 1;Note=Similar to Carbon-nitrogen hydrolase family protein.;Transcript_evidence=AK121892 (DDBJ%2C Best hit);ORF_evidence=B7E6S1 (UniProt);GO=Biological Process: polyamine biosynthetic process (GO:0006596),Biological Process: nitrogen compound metabolic process (GO:0006807),Molecular Function: hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds (GO:0016810),Molecular Function: N-carbamoylputrescine amidase activity (GO:0050126);InterPro=Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (IPR003010),N-carbamoylputrescine amidase (IPR017755);NIAS_FLcDNA=J033105C15;Oryzabase=19091;Expression=AK121892;TENOR=Os02t0533900-01;KEGG=Os02t0533900-01
Chr02	irgsp1_rep	five_prime_UTR	19649913	19650033	.	+	.	Parent=Os02t0533900-01
Chr02	irgsp1_rep	CDS	19650034	19650131	.	+	0	Parent=Os02t0533900-01
Chr02	irgsp1_rep	CDS	19651376	19651424	.	+	1	Parent=Os02t0533900-01
Chr02	irgsp1_rep	CDS	19651647	19651738	.	+	0	Parent=Os02t0533900-01
Chr02	irgsp1_rep	CDS	19651841	19651992	.	+	1	Parent=Os02t0533900-01
Chr02	irgsp1_rep	CDS	19652084	19652130	.	+	2	Parent=Os02t0533900-01
Chr02	irgsp1_rep	CDS	19652223	19652256	.	+	0	Parent=Os02t0533900-01
Chr02	irgsp1_rep	CDS	19652375	19652541	.	+	2	Parent=Os02t0533900-01
Chr02	irgsp1_rep	CDS	19652676	19652772	.	+	0	Parent=Os02t0533900-01
Chr02	irgsp1_rep	CDS	19652845	19653014	.	+	2	Parent=Os02t0533900-01
Chr02	irgsp1_rep	three_prime_UTR	19653015	19653378	.	+	.	Parent=Os02t0533900-01
Chr02	irgsp1_rep	mRNA	19649961	19653284	.	+	.	ID=Os02t0533900-02;Name=Os02t0533900-02;Locus_id=Os02g0533900;CGSNL Gene Symbol=CPA1;CGSNL Gene Name=CARBAMOYLPUTRESCINE AMIDASE 1;Oryzabase Gene Symbol Synonym(s)=OsCPA1;Oryzabase Gene Name Synonym(s)=N-carbamoylputrescine amidase%2C N-carbamoyl-Put amidohydrolase 1;Note=Similar to Carbon-nitrogen hydrolase family protein.;Transcript_evidence=AK061722 (DDBJ%2C Best hit),AK106147 (DDBJ%2C Best hit);ORF_evidence=Q93XI4 (UniProt);GO=Biological Process: polyamine biosynthetic process (GO:0006596),Biological Process: nitrogen compound metabolic process (GO:0006807),Molecular Function: hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds (GO:0016810),Molecular Function: N-carbamoylputrescine amidase activity (GO:0050126);InterPro=Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (IPR003010),N-carbamoylputrescine amidase (IPR017755);NIAS_FLcDNA=001-038-A03,001-207-H04;Oryzabase=19091;Expression=AK061722;TENOR=Os02t0533900-02;KEGG=Os02t0533900-02
Chr02	irgsp1_rep	five_prime_UTR	19649961	19650033	.	+	.	Parent=Os02t0533900-02
Chr02	irgsp1_rep	CDS	19650034	19650131	.	+	0	Parent=Os02t0533900-02
Chr02	irgsp1_rep	CDS	19651376	19651424	.	+	1	Parent=Os02t0533900-02
Chr02	irgsp1_rep	CDS	19651647	19651738	.	+	0	Parent=Os02t0533900-02
Chr02	irgsp1_rep	CDS	19651841	19651992	.	+	1	Parent=Os02t0533900-02
Chr02	irgsp1_rep	CDS	19652084	19652130	.	+	2	Parent=Os02t0533900-02
Chr02	irgsp1_rep	CDS	19652223	19652256	.	+	0	Parent=Os02t0533900-02
Chr02	irgsp1_rep	CDS	19652375	19652541	.	+	2	Parent=Os02t0533900-02
Chr02	irgsp1_rep	CDS	19652676	19652772	.	+	0	Parent=Os02t0533900-02
Chr02	irgsp1_rep	CDS	19652845	19653014	.	+	2	Parent=Os02t0533900-02
Chr02	irgsp1_rep	three_prime_UTR	19653015	19653284	.	+	.	Parent=Os02t0533900-02
Chr02	irgsp1_rep	mRNA	19653918	19654780	.	-	.	ID=Os02t0534000-00;Name=Os02t0534000-00;Locus_id=Os02g0534000;Note=Similar to OSIGBa0134P10.7 protein.;Transcript_evidence=AK353860 (DDBJ);ORF_evidence=Q01IS9 (UniProt);InterPro=Protein of unknown function DUF3049 (IPR021410);TENOR=Os02t0534000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	19654488	19654780	.	-	.	Parent=Os02t0534000-00
Chr02	irgsp1_rep	CDS	19653918	19654487	.	-	0	Parent=Os02t0534000-00
Chr02	irgsp1_rep	mRNA	19682544	19687163	.	+	.	ID=Os02t0534400-01;Name=Os02t0534400-01;Locus_id=Os02g0534400;CGSNL Gene Symbol=CIN1;CGSNL Gene Name=CELL-WALL INVERTASE 1;Oryzabase Gene Symbol Synonym(s)=OSCIN1%2C OsCIN1;Oryzabase Gene Name Synonym(s)=cell-wall invertase 1%2C Cell wall-bound invertase 1;Note=Cell wall invertase (EC 3.2.1.26).;Transcript_evidence=AK121403 (DDBJ%2C Best hit);ORF_evidence=Q0E0P0 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 32 (IPR001362),Concanavalin A-like lectin/glucanase (IPR008985),Glycosyl hydrolases family 32%2C N-terminal (IPR013148),Glycosyl hydrolase family 32%2C C-terminal (IPR013189),Glycoside hydrolase%2C family 32%2C active site (IPR018053),Glycosyl hydrolase family 43%2C five-bladed beta-propellor domain (IPR023296);NIAS_FLcDNA=J023132A09;Oryzabase=11689;Expression=AK121403;TENOR=Os02t0534400-01;KEGG=Os02t0534400-01 (EC:3.2.1.26)
Chr02	irgsp1_rep	five_prime_UTR	19682544	19682604	.	+	.	Parent=Os02t0534400-01
Chr02	irgsp1_rep	CDS	19682605	19682791	.	+	0	Parent=Os02t0534400-01
Chr02	irgsp1_rep	CDS	19683660	19683668	.	+	2	Parent=Os02t0534400-01
Chr02	irgsp1_rep	CDS	19684304	19685157	.	+	2	Parent=Os02t0534400-01
Chr02	irgsp1_rep	CDS	19685338	19685496	.	+	0	Parent=Os02t0534400-01
Chr02	irgsp1_rep	CDS	19685896	19686143	.	+	0	Parent=Os02t0534400-01
Chr02	irgsp1_rep	CDS	19686443	19686533	.	+	1	Parent=Os02t0534400-01
Chr02	irgsp1_rep	CDS	19686672	19686857	.	+	0	Parent=Os02t0534400-01
Chr02	irgsp1_rep	three_prime_UTR	19686858	19687163	.	+	.	Parent=Os02t0534400-01
Chr02	irgsp1_rep	mRNA	19682581	19686847	.	-	.	ID=Os02t0534550-00;Name=Os02t0534550-00;Locus_id=Os02g0534550;Note=Hypothetical protein.;Transcript_evidence=tplb0057c18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0534550-00
Chr02	irgsp1_rep	five_prime_UTR	19686601	19686847	.	-	.	Parent=Os02t0534550-00
Chr02	irgsp1_rep	five_prime_UTR	19686126	19686172	.	-	.	Parent=Os02t0534550-00
Chr02	irgsp1_rep	CDS	19685902	19686125	.	-	0	Parent=Os02t0534550-00
Chr02	irgsp1_rep	CDS	19685365	19685500	.	-	1	Parent=Os02t0534550-00
Chr02	irgsp1_rep	CDS	19685050	19685184	.	-	0	Parent=Os02t0534550-00
Chr02	irgsp1_rep	three_prime_UTR	19684310	19685049	.	-	.	Parent=Os02t0534550-00
Chr02	irgsp1_rep	three_prime_UTR	19682581	19682812	.	-	.	Parent=Os02t0534550-00
Chr02	irgsp1_rep	mRNA	19708659	19709195	.	-	.	ID=Os02t0534700-00;Name=Os02t0534700-00;Locus_id=Os02g0534700;Note=Pectinesterase inhibitor domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001159081.1 (RefSeq);GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);TENOR=Os02t0534700-00;KEGG=Os02t0534700-00
Chr02	irgsp1_rep	CDS	19708659	19709195	.	-	0	Parent=Os02t0534700-00
Chr02	irgsp1_rep	mRNA	19710368	19713468	.	-	.	ID=Os02t0534800-01;Name=Os02t0534800-01;Locus_id=Os02g0534800;Note=Similar to 40S ribosomal protein S14 (Clone MCH2).;Transcript_evidence=AK101459 (DDBJ%2C Best hit);ORF_evidence=Q01IS6 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S11 (IPR001971),Ribosomal S11%2C conserved site (IPR018102);NIAS_FLcDNA=J033040D12;Expression=AK101459;TENOR=Os02t0534800-01;KEGG=Os02t0534800-01
Chr02	irgsp1_rep	five_prime_UTR	19713388	19713468	.	-	.	Parent=Os02t0534800-01
Chr02	irgsp1_rep	CDS	19713385	19713387	.	-	0	Parent=Os02t0534800-01
Chr02	irgsp1_rep	CDS	19713164	19713286	.	-	0	Parent=Os02t0534800-01
Chr02	irgsp1_rep	CDS	19713016	19713061	.	-	0	Parent=Os02t0534800-01
Chr02	irgsp1_rep	CDS	19712025	19712110	.	-	2	Parent=Os02t0534800-01
Chr02	irgsp1_rep	CDS	19711821	19711950	.	-	0	Parent=Os02t0534800-01
Chr02	irgsp1_rep	CDS	19710743	19710810	.	-	2	Parent=Os02t0534800-01
Chr02	irgsp1_rep	three_prime_UTR	19710368	19710742	.	-	.	Parent=Os02t0534800-01
Chr02	irgsp1_rep	mRNA	19714852	19717671	.	-	.	ID=Os02t0535000-01;Name=Os02t0535000-01;Locus_id=Os02g0535000;Note=Similar to chaperone protein dnaJ-related.;Transcript_evidence=AK073974 (DDBJ%2C Best hit);ORF_evidence=NP_196231.2 (RefSeq);GO=Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C cysteine-rich domain (IPR001305);NIAS_FLcDNA=J033073K01;Expression=AK073974;TENOR=Os02t0535000-01;KEGG=Os02t0535000-01
Chr02	irgsp1_rep	five_prime_UTR	19717608	19717671	.	-	.	Parent=Os02t0535000-01
Chr02	irgsp1_rep	CDS	19717396	19717607	.	-	0	Parent=Os02t0535000-01
Chr02	irgsp1_rep	CDS	19716767	19716881	.	-	1	Parent=Os02t0535000-01
Chr02	irgsp1_rep	CDS	19716550	19716663	.	-	0	Parent=Os02t0535000-01
Chr02	irgsp1_rep	CDS	19716371	19716457	.	-	0	Parent=Os02t0535000-01
Chr02	irgsp1_rep	CDS	19716213	19716289	.	-	0	Parent=Os02t0535000-01
Chr02	irgsp1_rep	CDS	19715997	19716124	.	-	1	Parent=Os02t0535000-01
Chr02	irgsp1_rep	CDS	19715615	19715748	.	-	2	Parent=Os02t0535000-01
Chr02	irgsp1_rep	CDS	19715201	19715278	.	-	0	Parent=Os02t0535000-01
Chr02	irgsp1_rep	three_prime_UTR	19714852	19715200	.	-	.	Parent=Os02t0535000-01
Chr02	irgsp1_rep	mRNA	19715004	19717630	.	-	.	ID=Os02t0535000-02;Name=Os02t0535000-02;Locus_id=Os02g0535000;Note=Similar to chaperone protein dnaJ-related.;Transcript_evidence=AK067439 (DDBJ%2C Best hit);ORF_evidence=NP_196231.2 (RefSeq);GO=Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C cysteine-rich domain (IPR001305);NIAS_FLcDNA=J013100E03;Expression=AK067439;TENOR=Os02t0535000-02;KEGG=Os02t0535000-02
Chr02	irgsp1_rep	five_prime_UTR	19717608	19717630	.	-	.	Parent=Os02t0535000-02
Chr02	irgsp1_rep	CDS	19717396	19717607	.	-	0	Parent=Os02t0535000-02
Chr02	irgsp1_rep	CDS	19716767	19716881	.	-	1	Parent=Os02t0535000-02
Chr02	irgsp1_rep	CDS	19716550	19716663	.	-	0	Parent=Os02t0535000-02
Chr02	irgsp1_rep	CDS	19716371	19716457	.	-	0	Parent=Os02t0535000-02
Chr02	irgsp1_rep	CDS	19716213	19716289	.	-	0	Parent=Os02t0535000-02
Chr02	irgsp1_rep	CDS	19715997	19716124	.	-	1	Parent=Os02t0535000-02
Chr02	irgsp1_rep	CDS	19715615	19715748	.	-	2	Parent=Os02t0535000-02
Chr02	irgsp1_rep	CDS	19715201	19715278	.	-	0	Parent=Os02t0535000-02
Chr02	irgsp1_rep	three_prime_UTR	19715004	19715200	.	-	.	Parent=Os02t0535000-02
Chr02	irgsp1_rep	mRNA	19721199	19721414	.	-	.	ID=Os02t0535150-00;Name=Os02t0535150-00;Locus_id=Os02g0535150;Note=Non-protein coding transcript.;Transcript_evidence=EU943426 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0535150-00
Chr02	irgsp1_rep	exon	19721199	19721414	.	-	.	Parent=Os02t0535150-00
Chr02	irgsp1_rep	mRNA	19723841	19724741	.	+	.	ID=Os02t0535300-00;Name=Os02t0535300-00;Locus_id=Os02g0535300;Note=Hypothetical conserved gene.;Transcript_evidence=CT835341 (DDBJ%2C Best hit);ORF_evidence=Q6EPW8 (UniProt);InterPro=Pollen Ole e 1 allergen/extensin (IPR006041);TENOR=Os02t0535300-00;KEGG=Os02t0535300-00
Chr02	irgsp1_rep	five_prime_UTR	19723841	19723881	.	+	.	Parent=Os02t0535300-00
Chr02	irgsp1_rep	CDS	19723882	19724026	.	+	0	Parent=Os02t0535300-00
Chr02	irgsp1_rep	CDS	19724106	19724572	.	+	2	Parent=Os02t0535300-00
Chr02	irgsp1_rep	three_prime_UTR	19724573	19724741	.	+	.	Parent=Os02t0535300-00
Chr02	irgsp1_rep	mRNA	19727120	19729886	.	-	.	ID=Os02t0535400-01;Name=Os02t0535400-01;Locus_id=Os02g0535400;RAP-DB Gene Symbol Synonym(s)=RAR1%2C Os RAR1;Oryzabase Gene Symbol Synonym(s)=RAR1%2C Os RAR1%2C OsRAR1;Note=Cys- and His-rich domain (CHORD%2C zinc binding finger motif) containing protein%2C Innate-immune response;Transcript_evidence=AK111881;ORF_evidence=Q6EPW7;InterPro=Cysteine/histidine-rich domain (IPR007051);NIAS_FLcDNA=J033050A01;Manual Curation=December 7%2C 2009;Literature_PMID=18156216,18257679,10571178;Oryzabase=18104;TENOR=Os02t0535400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	19729650	19729886	.	-	.	Parent=Os02t0535400-01
Chr02	irgsp1_rep	five_prime_UTR	19728431	19728433	.	-	.	Parent=Os02t0535400-01
Chr02	irgsp1_rep	CDS	19728351	19728430	.	-	0	Parent=Os02t0535400-01
Chr02	irgsp1_rep	CDS	19728040	19728191	.	-	1	Parent=Os02t0535400-01
Chr02	irgsp1_rep	CDS	19727643	19727863	.	-	2	Parent=Os02t0535400-01
Chr02	irgsp1_rep	CDS	19727459	19727551	.	-	0	Parent=Os02t0535400-01
Chr02	irgsp1_rep	three_prime_UTR	19727120	19727458	.	-	.	Parent=Os02t0535400-01
Chr02	irgsp1_rep	mRNA	19750175	19755000	.	+	.	ID=Os02t0535700-01;Name=Os02t0535700-01;Locus_id=Os02g0535700;Note=Similar to OSIGBa0134P10.12 protein.;Transcript_evidence=AK073473 (DDBJ%2C Best hit);ORF_evidence=Q01IS4 (UniProt);InterPro=Protein of unknown function DUF1022 (IPR009367);NIAS_FLcDNA=J033045C05;TENOR=Os02t0535700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	19750175	19750307	.	+	.	Parent=Os02t0535700-01
Chr02	irgsp1_rep	CDS	19750308	19750499	.	+	0	Parent=Os02t0535700-01
Chr02	irgsp1_rep	CDS	19750620	19750858	.	+	0	Parent=Os02t0535700-01
Chr02	irgsp1_rep	CDS	19751606	19751702	.	+	1	Parent=Os02t0535700-01
Chr02	irgsp1_rep	CDS	19751819	19751968	.	+	0	Parent=Os02t0535700-01
Chr02	irgsp1_rep	CDS	19752056	19752253	.	+	0	Parent=Os02t0535700-01
Chr02	irgsp1_rep	three_prime_UTR	19752254	19753261	.	+	.	Parent=Os02t0535700-01
Chr02	irgsp1_rep	three_prime_UTR	19753342	19753405	.	+	.	Parent=Os02t0535700-01
Chr02	irgsp1_rep	three_prime_UTR	19753504	19753597	.	+	.	Parent=Os02t0535700-01
Chr02	irgsp1_rep	three_prime_UTR	19753689	19753797	.	+	.	Parent=Os02t0535700-01
Chr02	irgsp1_rep	three_prime_UTR	19754588	19755000	.	+	.	Parent=Os02t0535700-01
Chr02	irgsp1_rep	mRNA	19750289	19754691	.	-	.	ID=Os02t0535801-00;Name=Os02t0535801-00;Locus_id=Os02g0535801;Note=Hypothetical protein.;Transcript_evidence=tplb0045l19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0535801-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	19754588	19754691	.	-	.	Parent=Os02t0535801-00
Chr02	irgsp1_rep	five_prime_UTR	19753678	19753797	.	-	.	Parent=Os02t0535801-00
Chr02	irgsp1_rep	five_prime_UTR	19753527	19753584	.	-	.	Parent=Os02t0535801-00
Chr02	irgsp1_rep	CDS	19753467	19753526	.	-	0	Parent=Os02t0535801-00
Chr02	irgsp1_rep	CDS	19753149	19753278	.	-	0	Parent=Os02t0535801-00
Chr02	irgsp1_rep	CDS	19752064	19752182	.	-	2	Parent=Os02t0535801-00
Chr02	irgsp1_rep	CDS	19751881	19751973	.	-	0	Parent=Os02t0535801-00
Chr02	irgsp1_rep	three_prime_UTR	19751760	19751880	.	-	.	Parent=Os02t0535801-00
Chr02	irgsp1_rep	three_prime_UTR	19750628	19750893	.	-	.	Parent=Os02t0535801-00
Chr02	irgsp1_rep	three_prime_UTR	19750289	19750512	.	-	.	Parent=Os02t0535801-00
Chr02	irgsp1_rep	mRNA	19758327	19759355	.	-	.	ID=Os02t0535901-00;Name=Os02t0535901-00;Locus_id=Os02g0535901;Oryzabase Gene Symbol Synonym(s)=OsFbox092%2C OsFbox92%2C Os_F0704;Oryzabase Gene Name Synonym(s)=F-box protein 92;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=FP101458 (DDBJ);ORF_evidence=Q01L94 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=16886;TENOR=Os02t0535901-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	19759278	19759355	.	-	.	Parent=Os02t0535901-00
Chr02	irgsp1_rep	CDS	19758327	19759277	.	-	0	Parent=Os02t0535901-00
Chr02	irgsp1_rep	mRNA	19781773	19783562	.	+	.	ID=Os02t0536100-01;Name=Os02t0536100-01;Locus_id=Os02g0536100;Note=Conserved hypothetical protein.;Transcript_evidence=AK107922 (DDBJ%2C Best hit);ORF_evidence=B9F0E0 (UniProt);NIAS_FLcDNA=002-134-H05;Expression=AK107922;TENOR=Os02t0536100-01;KEGG=Os02t0536100-01
Chr02	irgsp1_rep	five_prime_UTR	19781773	19781915	.	+	.	Parent=Os02t0536100-01
Chr02	irgsp1_rep	five_prime_UTR	19782759	19782776	.	+	.	Parent=Os02t0536100-01
Chr02	irgsp1_rep	CDS	19782777	19782929	.	+	0	Parent=Os02t0536100-01
Chr02	irgsp1_rep	CDS	19783092	19783259	.	+	0	Parent=Os02t0536100-01
Chr02	irgsp1_rep	three_prime_UTR	19783260	19783562	.	+	.	Parent=Os02t0536100-01
Chr02	irgsp1_rep	mRNA	19789458	19791017	.	+	.	ID=Os02t0536300-00;Name=Os02t0536300-00;Locus_id=Os02g0536300;Oryzabase Gene Symbol Synonym(s)=OsFbox093%2C OsFbox93%2C Os_F0270;Oryzabase Gene Name Synonym(s)=F-box protein 93;Note=Leucine-rich repeat 2 domain containing protein.;Transcript_evidence=AK373184 (DDBJ);ORF_evidence=A3A7P0 (UniProt);InterPro=Leucine-rich repeat 2 (IPR013101);Oryzabase=16887;TENOR=Os02t0536300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	19789458	19790303	.	+	0	Parent=Os02t0536300-00
Chr02	irgsp1_rep	CDS	19790391	19790544	.	+	0	Parent=Os02t0536300-00
Chr02	irgsp1_rep	CDS	19790685	19790734	.	+	2	Parent=Os02t0536300-00
Chr02	irgsp1_rep	three_prime_UTR	19790735	19791017	.	+	.	Parent=Os02t0536300-00
Chr02	irgsp1_rep	mRNA	19791366	19795528	.	+	.	ID=Os02t0536400-01;Name=Os02t0536400-01;Locus_id=Os02g0536400;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK100595 (DDBJ%2C Best hit),AK120158 (DDBJ%2C Best hit);ORF_evidence=B8AJ33 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023106N09,J013030F03;Expression=AK100595;TENOR=Os02t0536400-01;KEGG=Os02t0536400-01
Chr02	irgsp1_rep	five_prime_UTR	19791366	19791506	.	+	.	Parent=Os02t0536400-01
Chr02	irgsp1_rep	five_prime_UTR	19792112	19792146	.	+	.	Parent=Os02t0536400-01
Chr02	irgsp1_rep	CDS	19793150	19795120	.	+	0	Parent=Os02t0536400-01
Chr02	irgsp1_rep	three_prime_UTR	19795121	19795528	.	+	.	Parent=Os02t0536400-01
Chr02	irgsp1_rep	mRNA	19794091	19796121	.	+	.	ID=Os02t0536400-02;Name=Os02t0536400-02;Locus_id=Os02g0536400;Note=Hypothetical conserved gene.;Transcript_evidence=AK073126 (DDBJ%2C Best hit);ORF_evidence=B8AJ33 (UniProt);NIAS_FLcDNA=J033008E20;Expression=AK073126;TENOR=Os02t0536400-02;KEGG=Os02t0536400-02
Chr02	irgsp1_rep	five_prime_UTR	19794091	19794091	.	+	.	Parent=Os02t0536400-02
Chr02	irgsp1_rep	CDS	19794092	19795120	.	+	0	Parent=Os02t0536400-02
Chr02	irgsp1_rep	three_prime_UTR	19795121	19796121	.	+	.	Parent=Os02t0536400-02
Chr02	irgsp1_rep	mRNA	19797819	19798718	.	-	.	ID=Os02t0536500-01;Name=Os02t0536500-01;Locus_id=Os02g0536500;CGSNL Gene Symbol=ACL2;CGSNL Gene Name=ABAXIALLY CURLED LEAF 2;Oryzabase Gene Symbol Synonym(s)=OsACL2;Oryzabase Gene Name Synonym(s)=abaxially curled leaf 2;Note=Similar to H0622F05.5 protein.;Transcript_evidence=AK073251 (DDBJ%2C Best hit);ORF_evidence=Q01LE9 (UniProt);NIAS_FLcDNA=J033022H17;Oryzabase=22660;Expression=AK073251;TENOR=Os02t0536500-01;KEGG=Os02t0536500-01
Chr02	irgsp1_rep	five_prime_UTR	19798630	19798718	.	-	.	Parent=Os02t0536500-01
Chr02	irgsp1_rep	five_prime_UTR	19798484	19798511	.	-	.	Parent=Os02t0536500-01
Chr02	irgsp1_rep	CDS	19798112	19798483	.	-	0	Parent=Os02t0536500-01
Chr02	irgsp1_rep	three_prime_UTR	19797819	19798111	.	-	.	Parent=Os02t0536500-01
Chr02	irgsp1_rep	mRNA	19801096	19802170	.	-	.	ID=Os02t0536601-00;Name=Os02t0536601-00;Locus_id=Os02g0536601;Note=Conserved hypothetical protein.;Transcript_evidence=CT835429 (DDBJ%2C Best hit);ORF_evidence=B8BEZ1 (UniProt);TENOR=Os02t0536601-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	19801609	19802170	.	-	.	Parent=Os02t0536601-00
Chr02	irgsp1_rep	CDS	19801321	19801608	.	-	0	Parent=Os02t0536601-00
Chr02	irgsp1_rep	three_prime_UTR	19801096	19801320	.	-	.	Parent=Os02t0536601-00
Chr02	irgsp1_rep	mRNA	19801627	19801932	.	+	.	ID=Os02t0536800-00;Name=Os02t0536800-00;Locus_id=Os02g0536800;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6EU56 (UniProt);TENOR=Os02t0536800-00
Chr02	irgsp1_rep	CDS	19801627	19801932	.	+	0	Parent=Os02t0536800-00
Chr02	irgsp1_rep	mRNA	19834281	19835082	.	+	.	ID=Os02t0537000-01;Name=Os02t0537000-01;Locus_id=Os02g0537000;Note=Pectinesterase inhibitor domain containing protein.;Transcript_evidence=AK062855 (DDBJ%2C Best hit);ORF_evidence=NP_001152694.1 (RefSeq);GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);NIAS_FLcDNA=001-108-A08;Expression=AK062855;TENOR=Os02t0537000-01;KEGG=Os02t0537000-01
Chr02	irgsp1_rep	five_prime_UTR	19834281	19834362	.	+	.	Parent=Os02t0537000-01
Chr02	irgsp1_rep	CDS	19834363	19834914	.	+	0	Parent=Os02t0537000-01
Chr02	irgsp1_rep	three_prime_UTR	19834915	19835082	.	+	.	Parent=Os02t0537000-01
Chr02	irgsp1_rep	mRNA	19838258	19838827	.	+	.	ID=Os02t0537100-00;Name=Os02t0537100-00;Locus_id=Os02g0537100;Note=Pectinesterase inhibitor domain containing protein.;Transcript_evidence=BT018532 (DDBJ);ORF_evidence=NP_001152694.1 (RefSeq);GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);TENOR=Os02t0537100-00;KEGG=Os02t0537100-00
Chr02	irgsp1_rep	CDS	19838258	19838818	.	+	0	Parent=Os02t0537100-00
Chr02	irgsp1_rep	three_prime_UTR	19838819	19838827	.	+	.	Parent=Os02t0537100-00
Chr02	irgsp1_rep	mRNA	19842195	19845119	.	-	.	ID=Os02t0537200-01;Name=Os02t0537200-01;Locus_id=Os02g0537200;Oryzabase Gene Symbol Synonym(s)=OsFbox094%2C OsFbox94%2C Os_F0336;Oryzabase Gene Name Synonym(s)=F-box protein 94;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK102851 (DDBJ%2C Best hit);ORF_evidence=A3A7P6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033110E07;Oryzabase=16888;Expression=AK102851;TENOR=Os02t0537200-01;KEGG=Os02t0537200-01
Chr02	irgsp1_rep	five_prime_UTR	19844949	19845119	.	-	.	Parent=Os02t0537200-01
Chr02	irgsp1_rep	CDS	19843186	19844439	.	-	0	Parent=Os02t0537200-01
Chr02	irgsp1_rep	CDS	19842944	19843099	.	-	0	Parent=Os02t0537200-01
Chr02	irgsp1_rep	CDS	19842510	19842803	.	-	0	Parent=Os02t0537200-01
Chr02	irgsp1_rep	three_prime_UTR	19842195	19842509	.	-	.	Parent=Os02t0537200-01
Chr02	irgsp1_rep	mRNA	19861224	19864508	.	+	.	ID=Os02t0537400-01;Name=Os02t0537400-01;Locus_id=Os02g0537400;Note=Similar to Heat shock protein.;Transcript_evidence=AK064436 (DDBJ%2C Best hit);ORF_evidence=Q39889 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=Chaperonin ClpA/B (IPR001270),ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-2 (IPR013093),Clp ATPase%2C C-terminal (IPR019489);NIAS_FLcDNA=002-110-D08;TENOR=Os02t0537400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	19861224	19861225	.	+	.	Parent=Os02t0537400-01
Chr02	irgsp1_rep	CDS	19861226	19861277	.	+	0	Parent=Os02t0537400-01
Chr02	irgsp1_rep	CDS	19862613	19862785	.	+	2	Parent=Os02t0537400-01
Chr02	irgsp1_rep	CDS	19862871	19863211	.	+	0	Parent=Os02t0537400-01
Chr02	irgsp1_rep	CDS	19863304	19863583	.	+	1	Parent=Os02t0537400-01
Chr02	irgsp1_rep	CDS	19863676	19863873	.	+	0	Parent=Os02t0537400-01
Chr02	irgsp1_rep	CDS	19863986	19864258	.	+	0	Parent=Os02t0537400-01
Chr02	irgsp1_rep	three_prime_UTR	19864259	19864508	.	+	.	Parent=Os02t0537400-01
Chr02	irgsp1_rep	mRNA	19862862	19864098	.	-	.	ID=Os02t0537450-00;Name=Os02t0537450-00;Locus_id=Os02g0537450;Note=Hypothetical protein.;Transcript_evidence=BT061280 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0537450-00
Chr02	irgsp1_rep	five_prime_UTR	19863317	19864098	.	-	.	Parent=Os02t0537450-00
Chr02	irgsp1_rep	CDS	19863295	19863316	.	-	0	Parent=Os02t0537450-00
Chr02	irgsp1_rep	CDS	19862912	19863204	.	-	2	Parent=Os02t0537450-00
Chr02	irgsp1_rep	three_prime_UTR	19862862	19862911	.	-	.	Parent=Os02t0537450-00
Chr02	irgsp1_rep	mRNA	19868200	19873307	.	-	.	ID=Os02t0537500-01;Name=Os02t0537500-01;Locus_id=Os02g0537500;RAP-DB Gene Symbol Synonym(s)=OsE2F1;Oryzabase Gene Symbol Synonym(s)=Orysa%3BE2F1%2C OsE2F1%2C E2F1%2C DLN58%2C OsDLN58;Oryzabase Gene Name Synonym(s)=E2F transcription factor 1%2C DLN repressor 58%2C DLN motif protein 58;Note=E2F transcription factor;Transcript_evidence=AK068689;ORF_evidence=Q5QL93;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding transcription factor activity (GO:0003700),Molecular Function: protein dimerization activity (GO:0046983),Cellular Component: transcription factor complex (GO:0005667);InterPro=Winged helix-like DNA-binding domain superfamily (IPR036388),Winged helix DNA-binding domain superfamily (IPR036390),E2F-DP heterodimerization region (IPR037241),E2F/DP family%2C winged-helix DNA-binding domain (IPR003316),E2F transcription factor%2C CC-MB domain (IPR032198);NIAS_FLcDNA=J013161I16;Manual Curation=May 7%2C 2018;Literature_PMID=29610335,12060226;Oryzabase=13310;Expression=AK068689;TENOR=Os02t0537500-01;KEGG=Os02t0537500-01
Chr02	irgsp1_rep	five_prime_UTR	19873046	19873307	.	-	.	Parent=Os02t0537500-01
Chr02	irgsp1_rep	CDS	19872815	19873045	.	-	0	Parent=Os02t0537500-01
Chr02	irgsp1_rep	CDS	19871348	19871525	.	-	0	Parent=Os02t0537500-01
Chr02	irgsp1_rep	CDS	19871209	19871265	.	-	2	Parent=Os02t0537500-01
Chr02	irgsp1_rep	CDS	19870914	19870999	.	-	2	Parent=Os02t0537500-01
Chr02	irgsp1_rep	CDS	19870732	19870820	.	-	0	Parent=Os02t0537500-01
Chr02	irgsp1_rep	CDS	19870579	19870630	.	-	1	Parent=Os02t0537500-01
Chr02	irgsp1_rep	CDS	19870405	19870457	.	-	0	Parent=Os02t0537500-01
Chr02	irgsp1_rep	CDS	19870257	19870307	.	-	1	Parent=Os02t0537500-01
Chr02	irgsp1_rep	CDS	19870123	19870171	.	-	1	Parent=Os02t0537500-01
Chr02	irgsp1_rep	CDS	19869956	19870021	.	-	0	Parent=Os02t0537500-01
Chr02	irgsp1_rep	CDS	19869785	19869861	.	-	0	Parent=Os02t0537500-01
Chr02	irgsp1_rep	CDS	19869473	19869707	.	-	1	Parent=Os02t0537500-01
Chr02	irgsp1_rep	CDS	19869113	19869179	.	-	0	Parent=Os02t0537500-01
Chr02	irgsp1_rep	CDS	19868858	19868994	.	-	2	Parent=Os02t0537500-01
Chr02	irgsp1_rep	three_prime_UTR	19868200	19868857	.	-	.	Parent=Os02t0537500-01
Chr02	irgsp1_rep	mRNA	19882081	19885745	.	+	.	ID=Os02t0537700-01;Name=Os02t0537700-01;Locus_id=Os02g0537700;RAP-DB Gene Symbol Synonym(s)=OsPRX2%2C BAS1;RAP-DB Gene Name Synonym(s)=chloroplast 2-Cys peroxiredoxin BAS1;Oryzabase Gene Symbol Synonym(s)=BAS1%2C OsTPX%2C Os2-Cys PrxA%2C 2-Cys PrxA%2C Os2-CysPrxA%2C 2-CysPrxA%2C 2CYSPRXA%2C OsPRX2%2C PRX2;Oryzabase Gene Name Synonym(s)=rice 2-Cys peroxiredoxin BAS1%2C chloroplast 2-Cys peroxiredoxin BAS1%2C 2-Cys Prx BAS1%2C 2-Cys peroxiredoxin A%2C Peroxiredoxin 2;Note=2-Cys peroxiredoxin (EC 1.11.1.15)%2C Stomatal closure%2C Potassium deficiency tolerance;Transcript_evidence=AK068919,AK104703;ORF_evidence=Q6ER94;GO=Biological Process: cell redox homeostasis (GO:0045454),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: antioxidant activity (GO:0016209),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: peroxiredoxin activity (GO:0051920);InterPro=Thioredoxin-like superfamily (IPR036249),Peroxiredoxin%2C AhpC-type (IPR024706),Thioredoxin domain (IPR013766),Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant (IPR000866),Peroxiredoxin%2C C-terminal (IPR019479);NIAS_FLcDNA=J013170F14,001-037-D02;Manual Curation=February 19%2C 2018;Literature_PMID=29128357,16891402;Oryzabase=9712;TENOR=Os02t0537700-01;Subcellular location=chloroplast (GO:0009507)
Chr02	irgsp1_rep	five_prime_UTR	19882081	19882151	.	+	.	Parent=Os02t0537700-01
Chr02	irgsp1_rep	CDS	19882152	19882343	.	+	0	Parent=Os02t0537700-01
Chr02	irgsp1_rep	CDS	19882431	19882505	.	+	0	Parent=Os02t0537700-01
Chr02	irgsp1_rep	CDS	19882640	19882721	.	+	0	Parent=Os02t0537700-01
Chr02	irgsp1_rep	CDS	19882825	19882904	.	+	2	Parent=Os02t0537700-01
Chr02	irgsp1_rep	CDS	19884231	19884356	.	+	0	Parent=Os02t0537700-01
Chr02	irgsp1_rep	CDS	19884478	19884591	.	+	0	Parent=Os02t0537700-01
Chr02	irgsp1_rep	CDS	19885408	19885524	.	+	0	Parent=Os02t0537700-01
Chr02	irgsp1_rep	three_prime_UTR	19885525	19885745	.	+	.	Parent=Os02t0537700-01
Chr02	irgsp1_rep	mRNA	19895179	19896404	.	-	.	ID=Os02t0537775-00;Name=Os02t0537775-00;Locus_id=Os02g0537775;Note=Hypothetical protein.;Transcript_evidence=tplb0057f18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0537775-00
Chr02	irgsp1_rep	five_prime_UTR	19895793	19896404	.	-	.	Parent=Os02t0537775-00
Chr02	irgsp1_rep	CDS	19895179	19895792	.	-	0	Parent=Os02t0537775-00
Chr02	irgsp1_rep	mRNA	19897130	19898864	.	+	.	ID=Os02t0537800-00;Name=Os02t0537800-00;Locus_id=Os02g0537800;Note=Hypothetical conserved gene.;Transcript_evidence=BT041363 (DDBJ);ORF_evidence=Q6ER93 (UniProt);TENOR=Os02t0537800-00;KEGG=Os02t0537800-00
Chr02	irgsp1_rep	CDS	19897130	19897387	.	+	0	Parent=Os02t0537800-00
Chr02	irgsp1_rep	CDS	19897650	19898864	.	+	0	Parent=Os02t0537800-00
Chr02	irgsp1_rep	mRNA	19912543	19921107	.	-	.	ID=Os02t0537900-01;Name=Os02t0537900-01;Locus_id=Os02g0537900;Note=Similar to Vacuolar-type H+-translocating inorganic pyrophosphatase (EC 3.6.1.1).;Transcript_evidence=AK070310 (DDBJ%2C Best hit);ORF_evidence=NP_001106067.1 (RefSeq);GO=Biological Process: proton transport (GO:0015992),Cellular Component: membrane (GO:0016020),Molecular Function: inorganic diphosphatase activity (GO:0004427),Molecular Function: hydrogen-translocating pyrophosphatase activity (GO:0009678);InterPro=Pyrophosphate-energised proton pump (IPR004131);NIAS_FLcDNA=J023047F16;Expression=AK070310;TENOR=Os02t0537900-01;KEGG=Os02t0537900-01 (EC:3.6.1.1)
Chr02	irgsp1_rep	five_prime_UTR	19920792	19921107	.	-	.	Parent=Os02t0537900-01
Chr02	irgsp1_rep	five_prime_UTR	19920456	19920633	.	-	.	Parent=Os02t0537900-01
Chr02	irgsp1_rep	CDS	19920366	19920455	.	-	0	Parent=Os02t0537900-01
Chr02	irgsp1_rep	CDS	19919461	19919664	.	-	0	Parent=Os02t0537900-01
Chr02	irgsp1_rep	CDS	19918228	19918379	.	-	0	Parent=Os02t0537900-01
Chr02	irgsp1_rep	CDS	19918005	19918152	.	-	1	Parent=Os02t0537900-01
Chr02	irgsp1_rep	CDS	19917782	19917914	.	-	0	Parent=Os02t0537900-01
Chr02	irgsp1_rep	CDS	19916766	19916938	.	-	2	Parent=Os02t0537900-01
Chr02	irgsp1_rep	CDS	19916138	19916258	.	-	0	Parent=Os02t0537900-01
Chr02	irgsp1_rep	CDS	19915428	19915615	.	-	2	Parent=Os02t0537900-01
Chr02	irgsp1_rep	CDS	19914329	19914766	.	-	0	Parent=Os02t0537900-01
Chr02	irgsp1_rep	CDS	19913913	19914077	.	-	0	Parent=Os02t0537900-01
Chr02	irgsp1_rep	CDS	19913677	19913832	.	-	0	Parent=Os02t0537900-01
Chr02	irgsp1_rep	CDS	19913482	19913593	.	-	0	Parent=Os02t0537900-01
Chr02	irgsp1_rep	CDS	19913168	19913387	.	-	2	Parent=Os02t0537900-01
Chr02	irgsp1_rep	CDS	19912697	19912796	.	-	1	Parent=Os02t0537900-01
Chr02	irgsp1_rep	three_prime_UTR	19912543	19912696	.	-	.	Parent=Os02t0537900-01
Chr02	irgsp1_rep	mRNA	19924403	19928309	.	+	.	ID=Os02t0537950-00;Name=Os02t0537950-00;Locus_id=Os02g0537950;Note=Hypothetical protein.;Transcript_evidence=tplb0028b08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0537950-00
Chr02	irgsp1_rep	five_prime_UTR	19924403	19924848	.	+	.	Parent=Os02t0537950-00
Chr02	irgsp1_rep	five_prime_UTR	19925135	19925342	.	+	.	Parent=Os02t0537950-00
Chr02	irgsp1_rep	five_prime_UTR	19925416	19925704	.	+	.	Parent=Os02t0537950-00
Chr02	irgsp1_rep	five_prime_UTR	19926074	19926485	.	+	.	Parent=Os02t0537950-00
Chr02	irgsp1_rep	five_prime_UTR	19927052	19927296	.	+	.	Parent=Os02t0537950-00
Chr02	irgsp1_rep	five_prime_UTR	19927408	19927543	.	+	.	Parent=Os02t0537950-00
Chr02	irgsp1_rep	five_prime_UTR	19927657	19927795	.	+	.	Parent=Os02t0537950-00
Chr02	irgsp1_rep	CDS	19927796	19927804	.	+	0	Parent=Os02t0537950-00
Chr02	irgsp1_rep	CDS	19927947	19928309	.	+	0	Parent=Os02t0537950-00
Chr02	irgsp1_rep	mRNA	19924420	19928340	.	-	.	ID=Os02t0538000-01;Name=Os02t0538000-01;Locus_id=Os02g0538000;RAP-DB Gene Symbol Synonym(s)=LAS;RAP-DB Gene Name Synonym(s)=Lethal albinic seedling;CGSNL Gene Symbol=LAS;CGSNL Gene Name=LETHAL ALBINIC SEEDLING;Oryzabase Gene Symbol Synonym(s)=OsLAS;Oryzabase Gene Name Synonym(s)=Lethal albinic seedling;Note=Threonyl-tRNA synthetase%2C Chloroplast biogenesis and chloroplast ribosomal system construction;Transcript_evidence=AK058738;ORF_evidence=Q6ER90;GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: threonyl-tRNA aminoacylation (GO:0006435),Biological Process: tRNA aminoacylation (GO:0043039),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: threonine-tRNA ligase activity (GO:0004829),Molecular Function: ATP binding (GO:0005524),Molecular Function: ligase activity%2C forming aminoacyl-tRNA and related compounds (GO:0016876),Cellular Component: cytoplasm (GO:0005737);InterPro=Threonine-tRNA ligase%2C class IIa (IPR002320),Threonyl/alanyl tRNA synthetase%2C class II-like%2C putative editing domain (IPR018163),Threonyl/alanyl tRNA synthetase%2C SAD (IPR012947),Aminoacyl-tRNA synthetase%2C class II (IPR006195),Aminoacyl-tRNA synthetase%2C class II (G/ P/ S/T) (IPR002314),Threonine-tRNA ligase catalytic core domain (IPR033728),Anticodon-binding (IPR004154);NIAS_FLcDNA=001-019-G05;Manual Curation=April 18%2C 2017;Literature_PMID=28405745;Oryzabase=22608;Expression=AK058738;TENOR=Os02t0538000-01;KEGG=Os02t0538000-01 (EC:6.1.1.3)
Chr02	irgsp1_rep	five_prime_UTR	19928271	19928340	.	-	.	Parent=Os02t0538000-01
Chr02	irgsp1_rep	CDS	19927947	19928270	.	-	0	Parent=Os02t0538000-01
Chr02	irgsp1_rep	CDS	19927658	19927804	.	-	0	Parent=Os02t0538000-01
Chr02	irgsp1_rep	CDS	19927397	19927544	.	-	0	Parent=Os02t0538000-01
Chr02	irgsp1_rep	CDS	19927031	19927284	.	-	2	Parent=Os02t0538000-01
Chr02	irgsp1_rep	CDS	19926085	19926462	.	-	0	Parent=Os02t0538000-01
Chr02	irgsp1_rep	CDS	19925408	19925716	.	-	0	Parent=Os02t0538000-01
Chr02	irgsp1_rep	CDS	19925140	19925340	.	-	0	Parent=Os02t0538000-01
Chr02	irgsp1_rep	CDS	19924594	19924857	.	-	0	Parent=Os02t0538000-01
Chr02	irgsp1_rep	three_prime_UTR	19924420	19924593	.	-	.	Parent=Os02t0538000-01
Chr02	irgsp1_rep	mRNA	19942510	19950421	.	+	.	ID=Os02t0538400-00;Name=Os02t0538400-00;Locus_id=Os02g0538400;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001047053.2 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),Domain of unknown function DUF3554 (IPR022716);TENOR=Os02t0538400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	19942510	19942702	.	+	0	Parent=Os02t0538400-00
Chr02	irgsp1_rep	CDS	19943442	19943635	.	+	2	Parent=Os02t0538400-00
Chr02	irgsp1_rep	CDS	19943940	19943972	.	+	0	Parent=Os02t0538400-00
Chr02	irgsp1_rep	CDS	19943999	19944071	.	+	0	Parent=Os02t0538400-00
Chr02	irgsp1_rep	CDS	19944507	19944644	.	+	2	Parent=Os02t0538400-00
Chr02	irgsp1_rep	CDS	19944854	19945000	.	+	2	Parent=Os02t0538400-00
Chr02	irgsp1_rep	CDS	19945080	19945264	.	+	2	Parent=Os02t0538400-00
Chr02	irgsp1_rep	CDS	19945383	19945610	.	+	0	Parent=Os02t0538400-00
Chr02	irgsp1_rep	CDS	19946907	19946984	.	+	0	Parent=Os02t0538400-00
Chr02	irgsp1_rep	CDS	19948065	19948181	.	+	0	Parent=Os02t0538400-00
Chr02	irgsp1_rep	CDS	19948371	19948523	.	+	0	Parent=Os02t0538400-00
Chr02	irgsp1_rep	CDS	19948605	19948985	.	+	0	Parent=Os02t0538400-00
Chr02	irgsp1_rep	CDS	19949059	19949196	.	+	0	Parent=Os02t0538400-00
Chr02	irgsp1_rep	CDS	19949286	19949375	.	+	0	Parent=Os02t0538400-00
Chr02	irgsp1_rep	CDS	19949469	19949505	.	+	0	Parent=Os02t0538400-00
Chr02	irgsp1_rep	CDS	19950246	19950421	.	+	2	Parent=Os02t0538400-00
Chr02	irgsp1_rep	mRNA	19951898	19953204	.	-	.	ID=Os02t0538550-00;Name=Os02t0538550-00;Locus_id=Os02g0538550;Note=Conserved hypothetical protein.;Transcript_evidence=EU961750 (DDBJ);ORF_evidence=NP_001056412.1 (RefSeq);TENOR=Os02t0538550-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	19952925	19953204	.	-	0	Parent=Os02t0538550-00
Chr02	irgsp1_rep	CDS	19951898	19952577	.	-	2	Parent=Os02t0538550-00
Chr02	irgsp1_rep	mRNA	19954579	19955654	.	-	.	ID=Os02t0538700-01;Name=Os02t0538700-01;Locus_id=Os02g0538700;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK109402 (DDBJ%2C Best hit);ORF_evidence=NP_001149607.1 (RefSeq);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=006-301-G02;TENOR=Os02t0538700-01
Chr02	irgsp1_rep	five_prime_UTR	19955511	19955654	.	-	.	Parent=Os02t0538700-01
Chr02	irgsp1_rep	CDS	19954836	19955510	.	-	0	Parent=Os02t0538700-01
Chr02	irgsp1_rep	three_prime_UTR	19954579	19954835	.	-	.	Parent=Os02t0538700-01
Chr02	irgsp1_rep	mRNA	19954579	19955629	.	-	.	ID=Os02t0538700-02;Name=Os02t0538700-02;Locus_id=Os02g0538700;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK061396 (DDBJ%2C Best hit),AK060001 (DDBJ%2C Best hit),AK065946 (DDBJ%2C Best hit),AK104564 (DDBJ%2C Best hit),AK104600 (DDBJ%2C Best hit),AK109400 (DDBJ%2C Best hit);ORF_evidence=NP_001149607.1 (RefSeq);NIAS_FLcDNA=006-305-E05,006-301-G10,J013049G21,006-306-D10,006-308-G02,006-301-D03;Expression=AK060001;TENOR=Os02t0538700-02;KEGG=Os02t0538700-02;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	19955511	19955629	.	-	.	Parent=Os02t0538700-02
Chr02	irgsp1_rep	CDS	19954836	19955510	.	-	0	Parent=Os02t0538700-02
Chr02	irgsp1_rep	three_prime_UTR	19954579	19954835	.	-	.	Parent=Os02t0538700-02
Chr02	irgsp1_rep	mRNA	19962640	19967923	.	-	.	ID=Os02t0538900-01;Name=Os02t0538900-01;Locus_id=Os02g0538900;CGSNL Gene Symbol=BZIP21;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 21;Oryzabase Gene Symbol Synonym(s)=OsbZIP21;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 21;Note=Basic-leucine zipper (bZIP) transcription factor domain containing protein.;Transcript_evidence=AK063644 (DDBJ%2C Best hit);ORF_evidence=XP_002453946.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827);NIAS_FLcDNA=001-118-H05;Oryzabase=10110;Expression=AK063644;TENOR=Os02t0538900-01;KEGG=Os02t0538900-01
Chr02	irgsp1_rep	five_prime_UTR	19967684	19967923	.	-	.	Parent=Os02t0538900-01
Chr02	irgsp1_rep	five_prime_UTR	19967081	19967169	.	-	.	Parent=Os02t0538900-01
Chr02	irgsp1_rep	CDS	19966512	19967080	.	-	0	Parent=Os02t0538900-01
Chr02	irgsp1_rep	CDS	19964584	19964659	.	-	1	Parent=Os02t0538900-01
Chr02	irgsp1_rep	CDS	19964113	19964239	.	-	0	Parent=Os02t0538900-01
Chr02	irgsp1_rep	CDS	19962936	19963144	.	-	2	Parent=Os02t0538900-01
Chr02	irgsp1_rep	three_prime_UTR	19962640	19962935	.	-	.	Parent=Os02t0538900-01
Chr02	irgsp1_rep	mRNA	19973187	19977396	.	+	.	ID=Os02t0539100-01;Name=Os02t0539100-01;Locus_id=Os02g0539100;CGSNL Gene Symbol=DGD1A;CGSNL Gene Name=DIGALACTOSYLDIACYLGLYCEROL SYNTHASE 1 ALPHA;Oryzabase Gene Symbol Synonym(s)=OsDGD1alpha%2C DGD1alpha%2C OsDGD1A;Oryzabase Gene Name Synonym(s)=Digalactosyldiacylglycerol synthase 1 alpha%2C DGDG synthase 1 alpha;Note=Similar to Digalactosyldiacylglycerol synthase 1.;Transcript_evidence=AK120285 (DDBJ%2C Best hit);ORF_evidence=NP_001152532.1 (RefSeq);GO=Biological Process: biosynthetic process (GO:0009058);InterPro=Glycosyl transferase%2C family 1 (IPR001296);NIAS_FLcDNA=J013049P04;Oryzabase=23293;Expression=AK120285;TENOR=Os02t0539100-01;KEGG=Os02t0539100-01 (EC:2.4.1.241)
Chr02	irgsp1_rep	five_prime_UTR	19973187	19973256	.	+	.	Parent=Os02t0539100-01
Chr02	irgsp1_rep	CDS	19973257	19973940	.	+	0	Parent=Os02t0539100-01
Chr02	irgsp1_rep	CDS	19974459	19974491	.	+	0	Parent=Os02t0539100-01
Chr02	irgsp1_rep	CDS	19975100	19975187	.	+	0	Parent=Os02t0539100-01
Chr02	irgsp1_rep	CDS	19975272	19975738	.	+	2	Parent=Os02t0539100-01
Chr02	irgsp1_rep	CDS	19975816	19976082	.	+	0	Parent=Os02t0539100-01
Chr02	irgsp1_rep	CDS	19976163	19976512	.	+	0	Parent=Os02t0539100-01
Chr02	irgsp1_rep	CDS	19976626	19977145	.	+	1	Parent=Os02t0539100-01
Chr02	irgsp1_rep	three_prime_UTR	19977146	19977396	.	+	.	Parent=Os02t0539100-01
Chr02	irgsp1_rep	mRNA	19981534	19983176	.	-	.	ID=Os02t0539200-01;Name=Os02t0539200-01;Locus_id=Os02g0539200;Oryzabase Gene Symbol Synonym(s)=OsPUB33;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 33%2C U-box protein 33;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK108494 (DDBJ%2C Best hit);ORF_evidence=Q01I41 (UniProt);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488);InterPro=U box domain (IPR003613),Armadillo-like helical (IPR011989),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Armadillo-type fold (IPR016024);NIAS_FLcDNA=002-143-G06;Oryzabase=17825;Expression=AK108494;TENOR=Os02t0539200-01;KEGG=Os02t0539200-01
Chr02	irgsp1_rep	five_prime_UTR	19983076	19983176	.	-	.	Parent=Os02t0539200-01
Chr02	irgsp1_rep	CDS	19981747	19983075	.	-	0	Parent=Os02t0539200-01
Chr02	irgsp1_rep	three_prime_UTR	19981534	19981746	.	-	.	Parent=Os02t0539200-01
Chr02	irgsp1_rep	mRNA	20000799	20002297	.	+	.	ID=Os02t0539500-01;Name=Os02t0539500-01;Locus_id=Os02g0539500;Oryzabase Gene Symbol Synonym(s)=OsVQ8;Oryzabase Gene Name Synonym(s)=VQ motif-containing protein 8;Note=VQ domain containing protein.;Transcript_evidence=AK243467 (DDBJ%2C Best hit);ORF_evidence=NP_001173012.1 (RefSeq);InterPro=VQ (IPR008889);NIAS_FLcDNA=J100071K17;Oryzabase=13624;TENOR=Os02t0539500-01;KEGG=Os02t0539500-01
Chr02	irgsp1_rep	five_prime_UTR	20000799	20000993	.	+	.	Parent=Os02t0539500-01
Chr02	irgsp1_rep	CDS	20000994	20001821	.	+	0	Parent=Os02t0539500-01
Chr02	irgsp1_rep	three_prime_UTR	20001822	20002297	.	+	.	Parent=Os02t0539500-01
Chr02	irgsp1_rep	mRNA	20005963	20013851	.	+	.	ID=Os02t0539600-01;Name=Os02t0539600-01;Locus_id=Os02g0539600;RAP-DB Gene Symbol Synonym(s)=GRY79;RAP-DB Gene Name Synonym(s)=green-revertible yellow79;CGSNL Gene Symbol=GRY79;CGSNL Gene Name=GREEN-REVERTIBLE YELLOW 79;Oryzabase Gene Symbol Synonym(s)=OsGRY79%2C OsMSL12%2C MSL12;Oryzabase Gene Name Synonym(s)=green-revertible yellow79%2C Myb/SANT-LIKE 12;Note=Putative metallo-&beta%3B-lactamase-trihelix chimera%2C Chloroplast development;Transcript_evidence=AK059666 (truncated),Inferred from literature;ORF_evidence=Inferred from literature;InterPro=Ribonuclease Z/Hydroxyacylglutathione hydrolase-like (IPR036866),Ribonuclease J%2C domain 2 (IPR042173),Metallo-beta-lactamase (IPR001279),Zn-dependent metallo-hydrolase%2C RNA specificity domain (IPR011108),SANT/Myb domain (IPR001005),Myb-like domain (IPR017877);NIAS_FLcDNA=001-031-F01 (truncated);Manual Curation=July 2%2C 2020;Literature_PMID=25903544;Oryzabase=19581;TENOR=Os02t0539600-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=chloroplast (GO:0009507)
Chr02	irgsp1_rep	five_prime_UTR	20005963	20006019	.	+	.	Parent=Os02t0539600-01
Chr02	irgsp1_rep	CDS	20006020	20006137	.	+	0	Parent=Os02t0539600-01
Chr02	irgsp1_rep	CDS	20006963	20007191	.	+	2	Parent=Os02t0539600-01
Chr02	irgsp1_rep	CDS	20007515	20007638	.	+	1	Parent=Os02t0539600-01
Chr02	irgsp1_rep	CDS	20008047	20008103	.	+	0	Parent=Os02t0539600-01
Chr02	irgsp1_rep	CDS	20008219	20008410	.	+	0	Parent=Os02t0539600-01
Chr02	irgsp1_rep	CDS	20008488	20008565	.	+	0	Parent=Os02t0539600-01
Chr02	irgsp1_rep	CDS	20009043	20009225	.	+	0	Parent=Os02t0539600-01
Chr02	irgsp1_rep	CDS	20009321	20009401	.	+	0	Parent=Os02t0539600-01
Chr02	irgsp1_rep	CDS	20009802	20009834	.	+	0	Parent=Os02t0539600-01
Chr02	irgsp1_rep	CDS	20010054	20010119	.	+	0	Parent=Os02t0539600-01
Chr02	irgsp1_rep	CDS	20010197	20010289	.	+	0	Parent=Os02t0539600-01
Chr02	irgsp1_rep	CDS	20010712	20010837	.	+	0	Parent=Os02t0539600-01
Chr02	irgsp1_rep	CDS	20011001	20011114	.	+	0	Parent=Os02t0539600-01
Chr02	irgsp1_rep	CDS	20011579	20011674	.	+	0	Parent=Os02t0539600-01
Chr02	irgsp1_rep	CDS	20011765	20011862	.	+	0	Parent=Os02t0539600-01
Chr02	irgsp1_rep	CDS	20012022	20012437	.	+	1	Parent=Os02t0539600-01
Chr02	irgsp1_rep	CDS	20012631	20013079	.	+	2	Parent=Os02t0539600-01
Chr02	irgsp1_rep	CDS	20013416	20013511	.	+	0	Parent=Os02t0539600-01
Chr02	irgsp1_rep	three_prime_UTR	20013512	20013851	.	+	.	Parent=Os02t0539600-01
Chr02	irgsp1_rep	mRNA	20026633	20030067	.	-	.	ID=Os02t0539900-00;Name=Os02t0539900-00;Locus_id=Os02g0539900;Oryzabase Gene Symbol Synonym(s)=OsWD40-44;Note=WD40 repeat domain containing protein.;Transcript_evidence=AK368145 (DDBJ);ORF_evidence=NP_001047059.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);Oryzabase=10725;TENOR=Os02t0539900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	20029003	20030067	.	-	0	Parent=Os02t0539900-00
Chr02	irgsp1_rep	CDS	20028796	20028886	.	-	0	Parent=Os02t0539900-00
Chr02	irgsp1_rep	CDS	20028256	20028484	.	-	2	Parent=Os02t0539900-00
Chr02	irgsp1_rep	CDS	20027897	20027903	.	-	1	Parent=Os02t0539900-00
Chr02	irgsp1_rep	three_prime_UTR	20027746	20027896	.	-	.	Parent=Os02t0539900-00
Chr02	irgsp1_rep	three_prime_UTR	20026633	20027111	.	-	.	Parent=Os02t0539900-00
Chr02	irgsp1_rep	mRNA	20034215	20036481	.	+	.	ID=Os02t0540000-01;Name=Os02t0540000-01;Locus_id=Os02g0540000;Note=Similar to Zinc finger%2C C3HC4 type family protein%2C expressed.;Transcript_evidence=AK107016 (DDBJ%2C Best hit);ORF_evidence=Q336R1 (UniProt);NIAS_FLcDNA=002-120-G09;TENOR=Os02t0540000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	20034215	20034523	.	+	.	Parent=Os02t0540000-01
Chr02	irgsp1_rep	five_prime_UTR	20034633	20034716	.	+	.	Parent=Os02t0540000-01
Chr02	irgsp1_rep	five_prime_UTR	20034931	20035720	.	+	.	Parent=Os02t0540000-01
Chr02	irgsp1_rep	five_prime_UTR	20035808	20035840	.	+	.	Parent=Os02t0540000-01
Chr02	irgsp1_rep	CDS	20035841	20036263	.	+	0	Parent=Os02t0540000-01
Chr02	irgsp1_rep	three_prime_UTR	20036264	20036481	.	+	.	Parent=Os02t0540000-01
Chr02	irgsp1_rep	mRNA	20056435	20057359	.	-	.	ID=Os02t0540400-01;Name=Os02t0540400-01;Locus_id=Os02g0540400;Note=Similar to Yarrowia lipolytica Chromosome C of strain CLIB99 of Yarrowia lipolytica.;Transcript_evidence=AK101654 (DDBJ%2C Best hit);ORF_evidence=B8AJB7 (UniProt);NIAS_FLcDNA=J033057E24;Expression=AK101654;TENOR=Os02t0540400-01;KEGG=Os02t0540400-01
Chr02	irgsp1_rep	five_prime_UTR	20057038	20057359	.	-	.	Parent=Os02t0540400-01
Chr02	irgsp1_rep	CDS	20056732	20057037	.	-	0	Parent=Os02t0540400-01
Chr02	irgsp1_rep	three_prime_UTR	20056435	20056731	.	-	.	Parent=Os02t0540400-01
Chr02	irgsp1_rep	mRNA	20082159	20083676	.	+	.	ID=Os02t0540700-00;Name=Os02t0540700-00;Locus_id=Os02g0540700;Oryzabase Gene Symbol Synonym(s)=OsPUB45;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 45%2C U-box protein 45;Note=Similar to Arm repeat-containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001147288.1 (RefSeq);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488);InterPro=U box domain (IPR003613),Armadillo-like helical (IPR011989),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Armadillo-type fold (IPR016024);Oryzabase=17836;TENOR=Os02t0540700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	20082159	20083676	.	+	0	Parent=Os02t0540700-00
Chr02	irgsp1_rep	mRNA	20102615	20103218	.	+	.	ID=Os02t0541000-01;Name=Os02t0541000-01;Locus_id=Os02g0541000;Note=Conserved hypothetical protein.;Transcript_evidence=AK107551 (DDBJ%2C Best hit);ORF_evidence=A3A7R8 (UniProt);NIAS_FLcDNA=002-130-A09;Expression=AK107551;TENOR=Os02t0541000-01;KEGG=Os02t0541000-01
Chr02	irgsp1_rep	five_prime_UTR	20102615	20102723	.	+	.	Parent=Os02t0541000-01
Chr02	irgsp1_rep	CDS	20102724	20103209	.	+	0	Parent=Os02t0541000-01
Chr02	irgsp1_rep	three_prime_UTR	20103210	20103218	.	+	.	Parent=Os02t0541000-01
Chr02	irgsp1_rep	mRNA	20109198	20110897	.	-	.	ID=Os02t0541150-00;Name=Os02t0541150-00;Locus_id=Os02g0541150;Note=Hypothetical protein.;Transcript_evidence=BT087019 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0541150-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	20110718	20110897	.	-	.	Parent=Os02t0541150-00
Chr02	irgsp1_rep	CDS	20110714	20110717	.	-	0	Parent=Os02t0541150-00
Chr02	irgsp1_rep	CDS	20109198	20109478	.	-	2	Parent=Os02t0541150-00
Chr02	irgsp1_rep	mRNA	20109037	20109343	.	+	.	ID=Os02t0541300-00;Name=Os02t0541300-00;Locus_id=Os02g0541300;Note=Hypothetical conserved gene.;Transcript_evidence=CT835431 (DDBJ%2C Best hit);ORF_evidence=Q6ESZ9 (UniProt);TENOR=Os02t0541300-00
Chr02	irgsp1_rep	five_prime_UTR	20109037	20109110	.	+	.	Parent=Os02t0541300-00
Chr02	irgsp1_rep	CDS	20109111	20109343	.	+	0	Parent=Os02t0541300-00
Chr02	irgsp1_rep	mRNA	20109369	20112225	.	+	.	ID=Os02t0541325-00;Name=Os02t0541325-00;Locus_id=Os02g0541325;Note=Similar to Serine decarboxylase.;Transcript_evidence=ab initio prediction;ORF_evidence=Q9SXL2 (UniProt);GO=Biological Process: carboxylic acid metabolic process (GO:0019752),Molecular Function: catalytic activity (GO:0003824),Molecular Function: carboxy-lyase activity (GO:0016831),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent decarboxylase (IPR002129),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424),Pyridoxal-phosphate binding site (IPR021115);TENOR=Os02t0541325-00
Chr02	irgsp1_rep	CDS	20109369	20109429	.	+	0	Parent=Os02t0541325-00
Chr02	irgsp1_rep	CDS	20110783	20111014	.	+	2	Parent=Os02t0541325-00
Chr02	irgsp1_rep	CDS	20111126	20111319	.	+	1	Parent=Os02t0541325-00
Chr02	irgsp1_rep	CDS	20111404	20111537	.	+	2	Parent=Os02t0541325-00
Chr02	irgsp1_rep	CDS	20111656	20112225	.	+	0	Parent=Os02t0541325-00
Chr02	irgsp1_rep	mRNA	20118183	20118829	.	+	.	ID=Os02t0541500-00;Name=Os02t0541500-00;Locus_id=Os02g0541500;Note=Similar to predicted protein.;Transcript_evidence=EU953643 (DDBJ);ORF_evidence=B9F0F5 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os02t0541500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	20118183	20118187	.	+	.	Parent=Os02t0541500-00
Chr02	irgsp1_rep	CDS	20118188	20118829	.	+	0	Parent=Os02t0541500-00
Chr02	irgsp1_rep	mRNA	20125036	20127726	.	-	.	ID=Os02t0541700-01;Name=Os02t0541700-01;Locus_id=Os02g0541700;Note=Similar to Ubiquinol-cytoChrome c reductase complex 7.8 kDa protein (EC 1.10.2.2) (Mitochondrial hinge protein) (CR7).;Transcript_evidence=AK062186 (DDBJ%2C Best hit),AK120450 (DDBJ%2C Best hit);ORF_evidence=P48504 (UniProt);GO=Biological Process: mitochondrial electron transport%2C ubiquinol to cytoChrome c (GO:0006122),Molecular Function: ubiquinol-cytoChrome-c reductase activity (GO:0008121);InterPro=CytoChrome b-c1 complex%2C subunit 6 (IPR003422),Ubiquinol-cytoChrome C reductase hinge domain (IPR023184);NIAS_FLcDNA=001-046-E04,J013102L08;Expression=AK062186;TENOR=Os02t0541700-01;KEGG=Os02t0541700-01 (EC:1.10.2.2)
Chr02	irgsp1_rep	five_prime_UTR	20127664	20127726	.	-	.	Parent=Os02t0541700-01
Chr02	irgsp1_rep	five_prime_UTR	20127467	20127528	.	-	.	Parent=Os02t0541700-01
Chr02	irgsp1_rep	CDS	20127465	20127466	.	-	0	Parent=Os02t0541700-01
Chr02	irgsp1_rep	CDS	20126011	20126095	.	-	1	Parent=Os02t0541700-01
Chr02	irgsp1_rep	CDS	20125598	20125687	.	-	0	Parent=Os02t0541700-01
Chr02	irgsp1_rep	CDS	20125259	20125291	.	-	0	Parent=Os02t0541700-01
Chr02	irgsp1_rep	three_prime_UTR	20125036	20125258	.	-	.	Parent=Os02t0541700-01
Chr02	irgsp1_rep	mRNA	20131802	20132893	.	+	.	ID=Os02t0541900-01;Name=Os02t0541900-01;Locus_id=Os02g0541900;Oryzabase Gene Symbol Synonym(s)=OsSTA63;Note=Conserved hypothetical protein.;Transcript_evidence=AK107058 (DDBJ%2C Best hit);ORF_evidence=A2X5T9 (UniProt);NIAS_FLcDNA=002-121-D10;Oryzabase=19366;Expression=AK107058;TENOR=Os02t0541900-01;KEGG=Os02t0541900-01
Chr02	irgsp1_rep	five_prime_UTR	20131802	20131829	.	+	.	Parent=Os02t0541900-01
Chr02	irgsp1_rep	CDS	20131830	20131929	.	+	0	Parent=Os02t0541900-01
Chr02	irgsp1_rep	CDS	20132061	20132153	.	+	2	Parent=Os02t0541900-01
Chr02	irgsp1_rep	CDS	20132481	20132731	.	+	2	Parent=Os02t0541900-01
Chr02	irgsp1_rep	three_prime_UTR	20132732	20132893	.	+	.	Parent=Os02t0541900-01
Chr02	irgsp1_rep	mRNA	20134851	20135100	.	-	.	ID=Os02t0542000-00;Name=Os02t0542000-00;Locus_id=Os02g0542000;Note=Hypothetical protein.;Transcript_evidence=BT018950 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0542000-00
Chr02	irgsp1_rep	five_prime_UTR	20135078	20135100	.	-	.	Parent=Os02t0542000-00
Chr02	irgsp1_rep	CDS	20134853	20135077	.	-	0	Parent=Os02t0542000-00
Chr02	irgsp1_rep	three_prime_UTR	20134851	20134852	.	-	.	Parent=Os02t0542000-00
Chr02	irgsp1_rep	mRNA	20134804	20135382	.	+	.	ID=Os02t0542100-00;Name=Os02t0542100-00;Locus_id=Os02g0542100;Note=Similar to Histone H3 (Fragment).;Transcript_evidence=FP093315 (DDBJ);ORF_evidence=Q43566 (UniProt);GO=Molecular Function: DNA binding (GO:0003677);InterPro=Histone-fold (IPR009072);TENOR=Os02t0542100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	20134804	20134973	.	+	.	Parent=Os02t0542100-00
Chr02	irgsp1_rep	CDS	20134974	20135252	.	+	0	Parent=Os02t0542100-00
Chr02	irgsp1_rep	three_prime_UTR	20135253	20135382	.	+	.	Parent=Os02t0542100-00
Chr02	irgsp1_rep	mRNA	20135513	20140725	.	-	.	ID=Os02t0542200-01;Name=Os02t0542200-01;Locus_id=Os02g0542200;Note=Similar to H0525E10.9 protein.;Transcript_evidence=AK066798 (DDBJ%2C Best hit);ORF_evidence=Q01JZ9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657),FAR1 DNA binding domain (IPR004330),Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);NIAS_FLcDNA=J013075G03;TENOR=Os02t0542200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	20140649	20140725	.	-	.	Parent=Os02t0542200-01
Chr02	irgsp1_rep	CDS	20140576	20140648	.	-	0	Parent=Os02t0542200-01
Chr02	irgsp1_rep	CDS	20137745	20139951	.	-	2	Parent=Os02t0542200-01
Chr02	irgsp1_rep	CDS	20136995	20137093	.	-	0	Parent=Os02t0542200-01
Chr02	irgsp1_rep	CDS	20136835	20136894	.	-	0	Parent=Os02t0542200-01
Chr02	irgsp1_rep	CDS	20136249	20136257	.	-	0	Parent=Os02t0542200-01
Chr02	irgsp1_rep	three_prime_UTR	20135513	20136248	.	-	.	Parent=Os02t0542200-01
Chr02	irgsp1_rep	mRNA	20135583	20140490	.	-	.	ID=Os02t0542200-02;Name=Os02t0542200-02;Locus_id=Os02g0542200;Note=Similar to H0525E10.9 protein.;Transcript_evidence=AK121855 (DDBJ%2C Best hit);ORF_evidence=Q01JZ9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657),FAR1 DNA binding domain (IPR004330),Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);NIAS_FLcDNA=J033102F24;Expression=AK121855;TENOR=Os02t0542200-02;KEGG=Os02t0542200-02
Chr02	irgsp1_rep	five_prime_UTR	20139962	20140490	.	-	.	Parent=Os02t0542200-02
Chr02	irgsp1_rep	CDS	20137745	20139961	.	-	0	Parent=Os02t0542200-02
Chr02	irgsp1_rep	CDS	20136932	20137093	.	-	0	Parent=Os02t0542200-02
Chr02	irgsp1_rep	three_prime_UTR	20135583	20136931	.	-	.	Parent=Os02t0542200-02
Chr02	irgsp1_rep	mRNA	20147866	20150003	.	+	.	ID=Os02t0542400-01;Name=Os02t0542400-01;Locus_id=Os02g0542400;RAP-DB Gene Symbol Synonym(s)=OsGT&gamma%3B-1%2C OsGTgamma-1;RAP-DB Gene Name Synonym(s)=GT factor gamma-1;CGSNL Gene Symbol=MSL13;CGSNL Gene Name=MYB/SANT-LIKE 13;Oryzabase Gene Symbol Synonym(s)=OsMSL13%2C DLN59%2C OsDLN59%2C OsGTgamma-1%2C GTgamma-1;Oryzabase Gene Name Synonym(s)=Myb/SANT-LIKE 13%2C DLN repressor 59%2C DLN motif protein 59%2C GT factor gamma-1;Note=Trihelix DNA binding domain containing protein%2C Regulation of stress tolerance%2C Salt tolerance;Transcript_evidence=AK065397;ORF_evidence=Q6ESZ1;NIAS_FLcDNA=J013022H04;Manual Curation=October 27%2C 2020;Literature_PMID=20039179;Oryzabase=22954;Expression=AK065397;TENOR=Os02t0542400-01;KEGG=Os02t0542400-01;Subcellular location=nucleus (GO:0005634)
Chr02	irgsp1_rep	five_prime_UTR	20147866	20148099	.	+	.	Parent=Os02t0542400-01
Chr02	irgsp1_rep	five_prime_UTR	20148244	20148481	.	+	.	Parent=Os02t0542400-01
Chr02	irgsp1_rep	CDS	20148482	20149714	.	+	0	Parent=Os02t0542400-01
Chr02	irgsp1_rep	three_prime_UTR	20149715	20150003	.	+	.	Parent=Os02t0542400-01
Chr02	irgsp1_rep	mRNA	20151011	20151369	.	+	.	ID=Os02t0542450-00;Name=Os02t0542450-00;Locus_id=Os02g0542450;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os02t0542450-00;KEGG=Os02t0542450-00
Chr02	irgsp1_rep	CDS	20151011	20151278	.	+	0	Parent=Os02t0542450-00
Chr02	irgsp1_rep	CDS	20151320	20151369	.	+	2	Parent=Os02t0542450-00
Chr02	irgsp1_rep	mRNA	20152453	20154121	.	+	.	ID=Os02t0542500-01;Name=Os02t0542500-01;Locus_id=Os02g0542500;Note=Similar to NF-180.;Transcript_evidence=AK109859 (DDBJ%2C Best hit);ORF_evidence=NP_001150071.1 (RefSeq);NIAS_FLcDNA=002-148-G10;Expression=AK109859;TENOR=Os02t0542500-01;KEGG=Os02t0542500-01
Chr02	irgsp1_rep	five_prime_UTR	20152453	20152733	.	+	.	Parent=Os02t0542500-01
Chr02	irgsp1_rep	CDS	20152734	20152961	.	+	0	Parent=Os02t0542500-01
Chr02	irgsp1_rep	CDS	20153058	20153780	.	+	0	Parent=Os02t0542500-01
Chr02	irgsp1_rep	three_prime_UTR	20153781	20154121	.	+	.	Parent=Os02t0542500-01
Chr02	irgsp1_rep	mRNA	20152543	20154023	.	-	.	ID=Os02t0542600-01;Name=Os02t0542600-01;Locus_id=Os02g0542600;Note=Hypothetical protein.;Transcript_evidence=AK110826 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-171-H08;Expression=AK110826;TENOR=Os02t0542600-01;KEGG=Os02t0542600-01
Chr02	irgsp1_rep	five_prime_UTR	20153896	20154023	.	-	.	Parent=Os02t0542600-01
Chr02	irgsp1_rep	CDS	20153497	20153895	.	-	0	Parent=Os02t0542600-01
Chr02	irgsp1_rep	three_prime_UTR	20152543	20153496	.	-	.	Parent=Os02t0542600-01
Chr02	irgsp1_rep	mRNA	20165666	20166649	.	-	.	ID=Os02t0543000-01;Name=Os02t0543000-01;Locus_id=Os02g0543000;CGSNL Gene Symbol=ASR1;CGSNL Gene Name=ABSCISIC ACID-STRESS-RIPENING-INDUCIBLE 1 PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsAsr1%2C OsASR3%2C ASR3%2C Asr3;Oryzabase Gene Name Synonym(s)=Abiotic Stress Responsive 3%2C "ABA-%2C stress and ripening-induced protein 3"%2C "abscisic acid-%2C stress- and ripening (ASR) gene 3";Note=Abscisic stress ripening protein 1.;Transcript_evidence=AK066415 (DDBJ%2C Best hit);ORF_evidence=A3A7S9 (UniProt);GO=Biological Process: response to stress (GO:0006950);InterPro=ABA/WDS induced protein (IPR003496);NIAS_FLcDNA=J013066K05;Oryzabase=8404;Expression=AK066415;TENOR=Os02t0543000-01;KEGG=Os02t0543000-01
Chr02	irgsp1_rep	five_prime_UTR	20166405	20166649	.	-	.	Parent=Os02t0543000-01
Chr02	irgsp1_rep	CDS	20166246	20166404	.	-	0	Parent=Os02t0543000-01
Chr02	irgsp1_rep	CDS	20165869	20166027	.	-	0	Parent=Os02t0543000-01
Chr02	irgsp1_rep	three_prime_UTR	20165666	20165868	.	-	.	Parent=Os02t0543000-01
Chr02	irgsp1_rep	mRNA	20165670	20166476	.	-	.	ID=Os02t0543000-02;Name=Os02t0543000-02;Locus_id=Os02g0543000;CGSNL Gene Symbol=ASR1;CGSNL Gene Name=ABSCISIC ACID-STRESS-RIPENING-INDUCIBLE 1 PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsAsr1%2C OsASR3%2C ASR3%2C Asr3;Oryzabase Gene Name Synonym(s)=Abiotic Stress Responsive 3%2C "ABA-%2C stress and ripening-induced protein 3"%2C "abscisic acid-%2C stress- and ripening (ASR) gene 3";Note=Hypothetical conserved gene.;Transcript_evidence=AK063217 (DDBJ%2C Best hit);ORF_evidence=Q6ESY3 (UniProt);GO=Biological Process: response to stress (GO:0006950);InterPro=ABA/WDS induced protein (IPR003496);NIAS_FLcDNA=001-112-E01;Oryzabase=8404;Expression=AK063217;TENOR=Os02t0543000-02;KEGG=Os02t0543000-02
Chr02	irgsp1_rep	five_prime_UTR	20166405	20166476	.	-	.	Parent=Os02t0543000-02
Chr02	irgsp1_rep	CDS	20166293	20166404	.	-	0	Parent=Os02t0543000-02
Chr02	irgsp1_rep	CDS	20165869	20165948	.	-	2	Parent=Os02t0543000-02
Chr02	irgsp1_rep	three_prime_UTR	20165670	20165868	.	-	.	Parent=Os02t0543000-02
Chr02	irgsp1_rep	mRNA	20165664	20166476	.	-	.	ID=Os02t0543000-03;Name=Os02t0543000-03;Locus_id=Os02g0543000;CGSNL Gene Symbol=ASR1;CGSNL Gene Name=ABSCISIC ACID-STRESS-RIPENING-INDUCIBLE 1 PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsAsr1%2C OsASR3%2C ASR3%2C Asr3;Oryzabase Gene Name Synonym(s)=Abiotic Stress Responsive 3%2C "ABA-%2C stress and ripening-induced protein 3"%2C "abscisic acid-%2C stress- and ripening (ASR) gene 3";Note=Similar to Abscisic stress ripening protein 1.;Transcript_evidence=AK060261 (DDBJ%2C Best hit);ORF_evidence=Q93VD6 (UniProt);NIAS_FLcDNA=001-004-H03;Oryzabase=8404;Expression=AK060261;TENOR=Os02t0543000-03;KEGG=Os02t0543000-03
Chr02	irgsp1_rep	five_prime_UTR	20166405	20166476	.	-	.	Parent=Os02t0543000-03
Chr02	irgsp1_rep	CDS	20166290	20166404	.	-	0	Parent=Os02t0543000-03
Chr02	irgsp1_rep	CDS	20165850	20165950	.	-	2	Parent=Os02t0543000-03
Chr02	irgsp1_rep	three_prime_UTR	20165664	20165849	.	-	.	Parent=Os02t0543000-03
Chr02	irgsp1_rep	mRNA	20165670	20166476	.	-	.	ID=Os02t0543000-04;Name=Os02t0543000-04;Locus_id=Os02g0543000;RAP-DB Gene Symbol Synonym(s)=OsASR1;RAP-DB Gene Name Synonym(s)="Abscisic acid-%2C stress-%2C and ripening-induced protein 1";CGSNL Gene Symbol=ASR1;CGSNL Gene Name=ABSCISIC ACID-STRESS-RIPENING-INDUCIBLE 1 PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsAsr1%2C OsASR3%2C ASR3%2C Asr3;Oryzabase Gene Name Synonym(s)=Abiotic Stress Responsive 3%2C "ABA-%2C stress and ripening-induced protein 3"%2C "abscisic acid-%2C stress- and ripening (ASR) gene 3";Note="Abscisic acid-%2C stress-%2C and ripening-induced (ASR) protein"%2C ABA-mediated regulation of stomatal closure%2C Salinity and drought tolerance;Transcript_evidence=AK062319;ORF_evidence=A0A0P0VK35;InterPro=ABA/WDS induced protein (IPR003496);NIAS_FLcDNA=001-101-C07;Manual Curation=March 4%2C 2020;Literature_PMID=32117337;Oryzabase=8404;Expression=AK062319;TENOR=Os02t0543000-04
Chr02	irgsp1_rep	five_prime_UTR	20166405	20166476	.	-	.	Parent=Os02t0543000-04
Chr02	irgsp1_rep	CDS	20166246	20166404	.	-	0	Parent=Os02t0543000-04
Chr02	irgsp1_rep	CDS	20165988	20166027	.	-	0	Parent=Os02t0543000-04
Chr02	irgsp1_rep	CDS	20165850	20165926	.	-	2	Parent=Os02t0543000-04
Chr02	irgsp1_rep	three_prime_UTR	20165670	20165849	.	-	.	Parent=Os02t0543000-04
Chr02	irgsp1_rep	mRNA	20165664	20166478	.	-	.	ID=Os02t0543000-05;Name=Os02t0543000-05;Locus_id=Os02g0543000;CGSNL Gene Symbol=ASR1;CGSNL Gene Name=ABSCISIC ACID-STRESS-RIPENING-INDUCIBLE 1 PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsAsr1%2C OsASR3%2C ASR3%2C Asr3;Oryzabase Gene Name Synonym(s)=Abiotic Stress Responsive 3%2C "ABA-%2C stress and ripening-induced protein 3"%2C "abscisic acid-%2C stress- and ripening (ASR) gene 3";Note=Abscisic stress ripening protein 1.;Transcript_evidence=AK062880 (DDBJ%2C Best hit);ORF_evidence=A3A7S9 (UniProt);GO=Biological Process: response to stress (GO:0006950);InterPro=ABA/WDS induced protein (IPR003496);NIAS_FLcDNA=001-108-D04;Oryzabase=8404;TENOR=Os02t0543000-05
Chr02	irgsp1_rep	five_prime_UTR	20166405	20166478	.	-	.	Parent=Os02t0543000-05
Chr02	irgsp1_rep	CDS	20166246	20166404	.	-	0	Parent=Os02t0543000-05
Chr02	irgsp1_rep	CDS	20165869	20166027	.	-	0	Parent=Os02t0543000-05
Chr02	irgsp1_rep	three_prime_UTR	20165664	20165868	.	-	.	Parent=Os02t0543000-05
Chr02	irgsp1_rep	mRNA	20169587	20172428	.	-	.	ID=Os02t0543100-00;Name=Os02t0543100-00;Locus_id=Os02g0543100;Note=Similar to predicted protein.;Transcript_evidence=BT067398 (DDBJ);ORF_evidence=B8AJC0 (UniProt);TENOR=Os02t0543100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	20172073	20172428	.	-	0	Parent=Os02t0543100-00
Chr02	irgsp1_rep	CDS	20170759	20171153	.	-	1	Parent=Os02t0543100-00
Chr02	irgsp1_rep	CDS	20170480	20170673	.	-	2	Parent=Os02t0543100-00
Chr02	irgsp1_rep	CDS	20169590	20169985	.	-	0	Parent=Os02t0543100-00
Chr02	irgsp1_rep	three_prime_UTR	20169587	20169589	.	-	.	Parent=Os02t0543100-00
Chr02	irgsp1_rep	mRNA	20174815	20176600	.	+	.	ID=Os02t0543200-01;Name=Os02t0543200-01;Locus_id=Os02g0543200;Oryzabase Gene Symbol Synonym(s)=OsFbox095%2C OsFbox95%2C Os_F0274%2C OsSTA64;Oryzabase Gene Name Synonym(s)=F-box protein 95;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK100963 (DDBJ%2C Best hit);ORF_evidence=B8AJC1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023142A10;Oryzabase=16889;Expression=AK100963;TENOR=Os02t0543200-01;KEGG=Os02t0543200-01
Chr02	irgsp1_rep	five_prime_UTR	20174815	20174849	.	+	.	Parent=Os02t0543200-01
Chr02	irgsp1_rep	CDS	20174850	20176331	.	+	0	Parent=Os02t0543200-01
Chr02	irgsp1_rep	three_prime_UTR	20176332	20176600	.	+	.	Parent=Os02t0543200-01
Chr02	irgsp1_rep	mRNA	20178901	20182030	.	-	.	ID=Os02t0543300-00;Name=Os02t0543300-00;Locus_id=Os02g0543300;Note=Protein synthesis factor%2C GTP-binding domain containing protein.;Transcript_evidence=AK331331 (DDBJ);ORF_evidence=NP_188938.1 (RefSeq);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Translation elongation factor EFG/EF2%2C C-terminal (IPR000640),Protein synthesis factor%2C GTP-binding (IPR000795),Translation elongation factor EFTu/EF1A%2C domain 2 (IPR004161),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Elongation factor G/III/V (IPR009022),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Ribosomal protein S5 domain 2-type fold (IPR020568);TENOR=Os02t0543300-00;KEGG=Os02t0543300-00
Chr02	irgsp1_rep	CDS	20179013	20182030	.	-	0	Parent=Os02t0543300-00
Chr02	irgsp1_rep	three_prime_UTR	20178901	20179012	.	-	.	Parent=Os02t0543300-00
Chr02	irgsp1_rep	mRNA	20182213	20186136	.	+	.	ID=Os02t0543400-01;Name=Os02t0543400-01;Locus_id=Os02g0543400;Oryzabase Gene Symbol Synonym(s)=OsWD40-45;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK105242 (DDBJ%2C Best hit);ORF_evidence=B6TLH1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=001-113-D11;Oryzabase=10726;Expression=AK105242;TENOR=Os02t0543400-01;KEGG=Os02t0543400-01
Chr02	irgsp1_rep	five_prime_UTR	20182213	20182279	.	+	.	Parent=Os02t0543400-01
Chr02	irgsp1_rep	CDS	20182280	20182497	.	+	0	Parent=Os02t0543400-01
Chr02	irgsp1_rep	CDS	20182615	20182717	.	+	1	Parent=Os02t0543400-01
Chr02	irgsp1_rep	CDS	20183264	20183371	.	+	0	Parent=Os02t0543400-01
Chr02	irgsp1_rep	CDS	20183488	20183597	.	+	0	Parent=Os02t0543400-01
Chr02	irgsp1_rep	CDS	20183776	20183883	.	+	1	Parent=Os02t0543400-01
Chr02	irgsp1_rep	CDS	20185062	20185107	.	+	1	Parent=Os02t0543400-01
Chr02	irgsp1_rep	CDS	20185298	20185429	.	+	0	Parent=Os02t0543400-01
Chr02	irgsp1_rep	CDS	20185558	20185638	.	+	0	Parent=Os02t0543400-01
Chr02	irgsp1_rep	three_prime_UTR	20185639	20186136	.	+	.	Parent=Os02t0543400-01
Chr02	irgsp1_rep	mRNA	20220812	20222814	.	-	.	ID=Os02t0543800-01;Name=Os02t0543800-01;Locus_id=Os02g0543800;Note=Hypothetical conserved gene.;Transcript_evidence=AK108800 (DDBJ%2C Best hit);ORF_evidence=B9F0G2 (UniProt);NIAS_FLcDNA=002-151-C08;Expression=AK108800;TENOR=Os02t0543800-01;KEGG=Os02t0543800-01
Chr02	irgsp1_rep	five_prime_UTR	20222813	20222814	.	-	.	Parent=Os02t0543800-01
Chr02	irgsp1_rep	CDS	20222735	20222812	.	-	0	Parent=Os02t0543800-01
Chr02	irgsp1_rep	CDS	20222613	20222675	.	-	0	Parent=Os02t0543800-01
Chr02	irgsp1_rep	CDS	20222481	20222543	.	-	0	Parent=Os02t0543800-01
Chr02	irgsp1_rep	CDS	20222293	20222334	.	-	0	Parent=Os02t0543800-01
Chr02	irgsp1_rep	CDS	20222125	20222190	.	-	0	Parent=Os02t0543800-01
Chr02	irgsp1_rep	CDS	20221461	20221568	.	-	0	Parent=Os02t0543800-01
Chr02	irgsp1_rep	CDS	20221270	20221284	.	-	0	Parent=Os02t0543800-01
Chr02	irgsp1_rep	three_prime_UTR	20221136	20221269	.	-	.	Parent=Os02t0543800-01
Chr02	irgsp1_rep	three_prime_UTR	20220812	20221044	.	-	.	Parent=Os02t0543800-01
Chr02	irgsp1_rep	mRNA	20227026	20235116	.	+	.	ID=Os02t0543900-01;Name=Os02t0543900-01;Locus_id=Os02g0543900;Note=Similar to OSIGBa0159H11-OSIGBa0137A07.4 protein.;Transcript_evidence=AK103887 (DDBJ%2C Best hit);ORF_evidence=Q01HV5 (UniProt);NIAS_FLcDNA=J033150C13;Expression=AK103887;TENOR=Os02t0543900-01;KEGG=Os02t0543900-01
Chr02	irgsp1_rep	five_prime_UTR	20227026	20227290	.	+	.	Parent=Os02t0543900-01
Chr02	irgsp1_rep	five_prime_UTR	20227471	20227617	.	+	.	Parent=Os02t0543900-01
Chr02	irgsp1_rep	five_prime_UTR	20229695	20229766	.	+	.	Parent=Os02t0543900-01
Chr02	irgsp1_rep	five_prime_UTR	20232909	20232965	.	+	.	Parent=Os02t0543900-01
Chr02	irgsp1_rep	CDS	20232966	20233231	.	+	0	Parent=Os02t0543900-01
Chr02	irgsp1_rep	CDS	20233305	20233410	.	+	1	Parent=Os02t0543900-01
Chr02	irgsp1_rep	CDS	20233482	20234184	.	+	0	Parent=Os02t0543900-01
Chr02	irgsp1_rep	CDS	20234778	20234785	.	+	2	Parent=Os02t0543900-01
Chr02	irgsp1_rep	three_prime_UTR	20234786	20235116	.	+	.	Parent=Os02t0543900-01
Chr02	irgsp1_rep	mRNA	20350362	20352296	.	-	.	ID=Os02t0544566-01;Name=Os02t0544566-01;Locus_id=Os02g0544566;Note=Lysosome-associated membrane glycoprotein%2C conserved site domain containing protein.;Transcript_evidence=AK289005 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090088O08;TENOR=Os02t0544566-01;KEGG=Os02t0544566-01
Chr02	irgsp1_rep	five_prime_UTR	20351040	20352296	.	-	.	Parent=Os02t0544566-01
Chr02	irgsp1_rep	CDS	20350824	20351039	.	-	0	Parent=Os02t0544566-01
Chr02	irgsp1_rep	three_prime_UTR	20350362	20350823	.	-	.	Parent=Os02t0544566-01
Chr02	irgsp1_rep	mRNA	20390262	20391635	.	+	.	ID=Os02t0545000-01;Name=Os02t0545000-01;Locus_id=Os02g0545000;Note=Similar to Myosin.;Transcript_evidence=AK062923 (DDBJ%2C Best hit);ORF_evidence=Q10A94 (UniProt);NIAS_FLcDNA=001-108-H10;Expression=AK062923;TENOR=Os02t0545000-01;KEGG=Os02t0545000-01
Chr02	irgsp1_rep	CDS	20390262	20390342	.	+	0	Parent=Os02t0545000-01
Chr02	irgsp1_rep	CDS	20390942	20391027	.	+	0	Parent=Os02t0545000-01
Chr02	irgsp1_rep	CDS	20391141	20391255	.	+	1	Parent=Os02t0545000-01
Chr02	irgsp1_rep	three_prime_UTR	20391256	20391635	.	+	.	Parent=Os02t0545000-01
Chr02	irgsp1_rep	mRNA	20486976	20489874	.	+	.	ID=Os02t0546400-00;Name=Os02t0546400-00;Locus_id=Os02g0546400;Note=Hypothetical protein.;Transcript_evidence=AB011264 (DDBJ);ORF_evidence=GeneMark;TENOR=Os02t0546400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	20486976	20486976	.	+	.	Parent=Os02t0546400-00
Chr02	irgsp1_rep	CDS	20486977	20487241	.	+	0	Parent=Os02t0546400-00
Chr02	irgsp1_rep	CDS	20489410	20489495	.	+	2	Parent=Os02t0546400-00
Chr02	irgsp1_rep	three_prime_UTR	20489496	20489874	.	+	.	Parent=Os02t0546400-00
Chr02	irgsp1_rep	mRNA	20490867	20491976	.	-	.	ID=Os02t0546600-01;Name=Os02t0546600-01;Locus_id=Os02g0546600;CGSNL Gene Symbol=ERF98;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 98;Oryzabase Gene Symbol Synonym(s)=OsERF#098%2C OsERF098%2C OsERF98%2C AP2/EREBP#120%2C AP2/EREBP120;Oryzabase Gene Name Synonym(s)=ethylene response factor 98%2C APETALA2/ethylene-responsive element binding protein 120;Note=Similar to AP2 domain containing protein RAP2.2 (Fragment).;Transcript_evidence=AK107852 (DDBJ%2C Best hit);ORF_evidence=E5GB56 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=002-134-A10;Oryzabase=10599;Expression=AK107852;TENOR=Os02t0546600-01;KEGG=Os02t0546600-01
Chr02	irgsp1_rep	five_prime_UTR	20491975	20491976	.	-	.	Parent=Os02t0546600-01
Chr02	irgsp1_rep	CDS	20491680	20491974	.	-	0	Parent=Os02t0546600-01
Chr02	irgsp1_rep	CDS	20491113	20491561	.	-	2	Parent=Os02t0546600-01
Chr02	irgsp1_rep	three_prime_UTR	20490867	20491112	.	-	.	Parent=Os02t0546600-01
Chr02	irgsp1_rep	mRNA	20494362	20495719	.	-	.	ID=Os02t0546700-01;Name=Os02t0546700-01;Locus_id=Os02g0546700;Note=Non-protein coding transcript.;Transcript_evidence=AK110754 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-170-G11;TENOR=Os02t0546700-01
Chr02	irgsp1_rep	exon	20494362	20495719	.	-	.	Parent=Os02t0546700-01
Chr02	irgsp1_rep	mRNA	20530067	20530486	.	+	.	ID=Os02t0547300-00;Name=Os02t0547300-00;Locus_id=Os02g0547300;Note=Similar to H0523F07.7 protein.;Transcript_evidence=BT087557 (DDBJ);ORF_evidence=Q01JQ6 (UniProt);TENOR=Os02t0547300-00;KEGG=Os02t0547300-00
Chr02	irgsp1_rep	CDS	20530067	20530486	.	+	0	Parent=Os02t0547300-00
Chr02	irgsp1_rep	mRNA	20562601	20565664	.	+	.	ID=Os02t0548100-00;Name=Os02t0548100-00;Locus_id=Os02g0548100;Oryzabase Gene Symbol Synonym(s)=OsbHLH147%2C bHLH147;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 147;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6YYG5 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);Oryzabase=15423;TENOR=Os02t0548100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	20562601	20562960	.	+	0	Parent=Os02t0548100-00
Chr02	irgsp1_rep	CDS	20563115	20563747	.	+	0	Parent=Os02t0548100-00
Chr02	irgsp1_rep	CDS	20565560	20565664	.	+	0	Parent=Os02t0548100-00
Chr02	irgsp1_rep	mRNA	20588289	20589687	.	-	.	ID=Os02t0548700-00;Name=Os02t0548700-00;Locus_id=Os02g0548700;Oryzabase Gene Symbol Synonym(s)=OsPUB43;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 43%2C U-box protein 43;Note=Similar to ubiquitin-protein ligase.;Transcript_evidence=CT828998 (DDBJ%2C Best hit);ORF_evidence=NP_001148065.1 (RefSeq);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488);InterPro=U box domain (IPR003613),Armadillo-like helical (IPR011989),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Armadillo-type fold (IPR016024);Oryzabase=17834;TENOR=Os02t0548700-00;KEGG=Os02t0548700-00
Chr02	irgsp1_rep	five_prime_UTR	20589605	20589687	.	-	.	Parent=Os02t0548700-00
Chr02	irgsp1_rep	CDS	20588351	20589604	.	-	0	Parent=Os02t0548700-00
Chr02	irgsp1_rep	three_prime_UTR	20588289	20588350	.	-	.	Parent=Os02t0548700-00
Chr02	irgsp1_rep	mRNA	20607727	20615688	.	-	.	ID=Os02t0548900-01;Name=Os02t0548900-01;Locus_id=Os02g0548900;Note=Similar to threonine endopeptidase.;Transcript_evidence=AK070239 (DDBJ%2C Best hit);ORF_evidence=NP_001152476.1 (RefSeq);NIAS_FLcDNA=J023045K14;TENOR=Os02t0548900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	20615422	20615688	.	-	.	Parent=Os02t0548900-01
Chr02	irgsp1_rep	CDS	20615335	20615421	.	-	0	Parent=Os02t0548900-01
Chr02	irgsp1_rep	CDS	20614597	20614818	.	-	0	Parent=Os02t0548900-01
Chr02	irgsp1_rep	three_prime_UTR	20613369	20614596	.	-	.	Parent=Os02t0548900-01
Chr02	irgsp1_rep	three_prime_UTR	20608820	20608908	.	-	.	Parent=Os02t0548900-01
Chr02	irgsp1_rep	three_prime_UTR	20607727	20607967	.	-	.	Parent=Os02t0548900-01
Chr02	irgsp1_rep	mRNA	20623193	20626259	.	+	.	ID=Os02t0549200-01;Name=Os02t0549200-01;Locus_id=Os02g0549200;CGSNL Gene Symbol=RLCK73;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 73;Oryzabase Gene Symbol Synonym(s)=OsRLCK73;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 73;Note=Similar to Ser Thr specific protein kinase-like protein.;Transcript_evidence=AK069491 (DDBJ%2C Best hit);ORF_evidence=NP_001167697.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023025B09;Oryzabase=18788;Expression=AK069491;TENOR=Os02t0549200-01;KEGG=Os02t0549200-01
Chr02	irgsp1_rep	five_prime_UTR	20623193	20623482	.	+	.	Parent=Os02t0549200-01
Chr02	irgsp1_rep	CDS	20623483	20624117	.	+	0	Parent=Os02t0549200-01
Chr02	irgsp1_rep	CDS	20624457	20624561	.	+	1	Parent=Os02t0549200-01
Chr02	irgsp1_rep	CDS	20624658	20624780	.	+	1	Parent=Os02t0549200-01
Chr02	irgsp1_rep	CDS	20624864	20625034	.	+	1	Parent=Os02t0549200-01
Chr02	irgsp1_rep	CDS	20625116	20625245	.	+	1	Parent=Os02t0549200-01
Chr02	irgsp1_rep	CDS	20625325	20625534	.	+	0	Parent=Os02t0549200-01
Chr02	irgsp1_rep	CDS	20625886	20626032	.	+	0	Parent=Os02t0549200-01
Chr02	irgsp1_rep	three_prime_UTR	20626033	20626259	.	+	.	Parent=Os02t0549200-01
Chr02	irgsp1_rep	mRNA	20631443	20633997	.	-	.	ID=Os02t0549401-00;Name=Os02t0549401-00;Locus_id=Os02g0549401;Note=Hypothetical gene.;Transcript_evidence=CT835345 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os02t0549401-00;KEGG=Os02t0549401-00
Chr02	irgsp1_rep	CDS	20633794	20633997	.	-	0	Parent=Os02t0549401-00
Chr02	irgsp1_rep	CDS	20632535	20632564	.	-	0	Parent=Os02t0549401-00
Chr02	irgsp1_rep	three_prime_UTR	20632455	20632534	.	-	.	Parent=Os02t0549401-00
Chr02	irgsp1_rep	three_prime_UTR	20631443	20631668	.	-	.	Parent=Os02t0549401-00
Chr02	irgsp1_rep	mRNA	20636359	20636499	.	-	.	ID=Os02t0549467-00;Name=Os02t0549467-00;Locus_id=Os02g0549467;Note=Non-protein coding transcript.;Transcript_evidence=EU947769 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0549467-00
Chr02	irgsp1_rep	exon	20636359	20636499	.	-	.	Parent=Os02t0549467-00
Chr02	irgsp1_rep	mRNA	20646308	20646450	.	-	.	ID=Os02t0549533-00;Name=Os02t0549533-00;Locus_id=Os02g0549533;Note=Non-protein coding transcript.;Transcript_evidence=EU947769 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0549533-00
Chr02	irgsp1_rep	exon	20646308	20646450	.	-	.	Parent=Os02t0549533-00
Chr02	irgsp1_rep	mRNA	20649580	20651921	.	+	.	ID=Os02t0549600-01;Name=Os02t0549600-01;Locus_id=Os02g0549600;CGSNL Gene Symbol=RPS10A;CGSNL Gene Name=RIBOSOMAL PROTEIN S10A;Oryzabase Gene Symbol Synonym(s)=RPS10a%2C OsRPS10a;Oryzabase Gene Name Synonym(s)=ribosomal protein S10a%2C ribosomal protein small subunit 10a;Note=Similar to 40S ribosomal protein S10-1.;Transcript_evidence=AK066564 (DDBJ%2C Best hit);ORF_evidence=Q9AYP4 (UniProt);InterPro=Plectin/S10%2C N-terminal (IPR005326);NIAS_FLcDNA=J013073I17;Oryzabase=22176;Expression=AK066564;TENOR=Os02t0549600-01;KEGG=Os02t0549600-01
Chr02	irgsp1_rep	five_prime_UTR	20649580	20649658	.	+	.	Parent=Os02t0549600-01
Chr02	irgsp1_rep	CDS	20649659	20649661	.	+	0	Parent=Os02t0549600-01
Chr02	irgsp1_rep	CDS	20649756	20649804	.	+	0	Parent=Os02t0549600-01
Chr02	irgsp1_rep	CDS	20650286	20650568	.	+	2	Parent=Os02t0549600-01
Chr02	irgsp1_rep	CDS	20651132	20651267	.	+	1	Parent=Os02t0549600-01
Chr02	irgsp1_rep	CDS	20651620	20651700	.	+	0	Parent=Os02t0549600-01
Chr02	irgsp1_rep	three_prime_UTR	20651701	20651921	.	+	.	Parent=Os02t0549600-01
Chr02	irgsp1_rep	mRNA	20649755	20651708	.	-	.	ID=Os02t0549650-00;Name=Os02t0549650-00;Locus_id=Os02g0549650;Note=Hypothetical gene.;Transcript_evidence=BT019280 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0549650-00;KEGG=Os02t0549650-00
Chr02	irgsp1_rep	five_prime_UTR	20651636	20651708	.	-	.	Parent=Os02t0549650-00
Chr02	irgsp1_rep	five_prime_UTR	20651263	20651281	.	-	.	Parent=Os02t0549650-00
Chr02	irgsp1_rep	CDS	20651140	20651262	.	-	0	Parent=Os02t0549650-00
Chr02	irgsp1_rep	CDS	20650467	20650571	.	-	0	Parent=Os02t0549650-00
Chr02	irgsp1_rep	three_prime_UTR	20650300	20650466	.	-	.	Parent=Os02t0549650-00
Chr02	irgsp1_rep	three_prime_UTR	20649755	20649818	.	-	.	Parent=Os02t0549650-00
Chr02	irgsp1_rep	mRNA	20652912	20660287	.	+	.	ID=Os02t0549700-01;Name=Os02t0549700-01;Locus_id=Os02g0549700;Note=Hypothetical conserved gene.;Transcript_evidence=AK069321 (DDBJ%2C Best hit);ORF_evidence=B8A8T2 (UniProt);NIAS_FLcDNA=J023013D17;TENOR=Os02t0549700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	20652912	20653294	.	+	.	Parent=Os02t0549700-01
Chr02	irgsp1_rep	CDS	20653295	20653693	.	+	0	Parent=Os02t0549700-01
Chr02	irgsp1_rep	three_prime_UTR	20653694	20653701	.	+	.	Parent=Os02t0549700-01
Chr02	irgsp1_rep	three_prime_UTR	20653932	20654092	.	+	.	Parent=Os02t0549700-01
Chr02	irgsp1_rep	three_prime_UTR	20654531	20654608	.	+	.	Parent=Os02t0549700-01
Chr02	irgsp1_rep	three_prime_UTR	20659774	20660287	.	+	.	Parent=Os02t0549700-01
Chr02	irgsp1_rep	mRNA	20652913	20654762	.	+	.	ID=Os02t0549700-02;Name=Os02t0549700-02;Locus_id=Os02g0549700;Note=Hypothetical conserved gene.;Transcript_evidence=AK071082 (DDBJ%2C Best hit);ORF_evidence=B8A8T2 (UniProt);NIAS_FLcDNA=J023076K18;Expression=AK071082;TENOR=Os02t0549700-02;KEGG=Os02t0549700-02
Chr02	irgsp1_rep	five_prime_UTR	20652913	20653294	.	+	.	Parent=Os02t0549700-02
Chr02	irgsp1_rep	CDS	20653295	20653693	.	+	0	Parent=Os02t0549700-02
Chr02	irgsp1_rep	three_prime_UTR	20653694	20653701	.	+	.	Parent=Os02t0549700-02
Chr02	irgsp1_rep	three_prime_UTR	20653932	20654092	.	+	.	Parent=Os02t0549700-02
Chr02	irgsp1_rep	three_prime_UTR	20654531	20654762	.	+	.	Parent=Os02t0549700-02
Chr02	irgsp1_rep	mRNA	20655509	20655672	.	+	.	ID=Os02t0549850-00;Name=Os02t0549850-00;Locus_id=Os02g0549850;Note=Non-protein coding transcript.;Transcript_evidence=EU951587 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0549850-00
Chr02	irgsp1_rep	exon	20655509	20655672	.	+	.	Parent=Os02t0549850-00
Chr02	irgsp1_rep	mRNA	20665484	20668400	.	+	.	ID=Os02t0549900-01;Name=Os02t0549900-01;Locus_id=Os02g0549900;Note=Hypothetical conserved gene.;Transcript_evidence=AK288649 (DDBJ%2C Best hit);ORF_evidence=Q6Z103 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=J090056L21;TENOR=Os02t0549900-01
Chr02	irgsp1_rep	five_prime_UTR	20665484	20667384	.	+	.	Parent=Os02t0549900-01
Chr02	irgsp1_rep	CDS	20667385	20668400	.	+	0	Parent=Os02t0549900-01
Chr02	irgsp1_rep	mRNA	20676454	20682186	.	+	.	ID=Os02t0550000-01;Name=Os02t0550000-01;Locus_id=Os02g0550000;RAP-DB Gene Symbol Synonym(s)=DMD1;RAP-DB Gene Name Synonym(s)=Defective Microspore Development1;Note=Nuclear protein with transcriptional activation activity%2C Microspore cell integrity%2C Pollen wall formation;Transcript_evidence=AK242903;ORF_evidence=Q0E0I3;NIAS_FLcDNA=J090081P08;Manual Curation=May 14%2C 2020;Literature_PMID=32391618;TENOR=Os02t0550000-01;KEGG=Os02t0550000-01;Subcellular location=nucleus (GO:0005634)
Chr02	irgsp1_rep	five_prime_UTR	20676454	20676670	.	+	.	Parent=Os02t0550000-01
Chr02	irgsp1_rep	five_prime_UTR	20676795	20676863	.	+	.	Parent=Os02t0550000-01
Chr02	irgsp1_rep	CDS	20676864	20679004	.	+	0	Parent=Os02t0550000-01
Chr02	irgsp1_rep	CDS	20679297	20679477	.	+	1	Parent=Os02t0550000-01
Chr02	irgsp1_rep	CDS	20679604	20679652	.	+	0	Parent=Os02t0550000-01
Chr02	irgsp1_rep	CDS	20681807	20681862	.	+	2	Parent=Os02t0550000-01
Chr02	irgsp1_rep	three_prime_UTR	20681863	20682186	.	+	.	Parent=Os02t0550000-01
Chr02	irgsp1_rep	mRNA	20676853	20679479	.	-	.	ID=Os02t0550050-00;Name=Os02t0550050-00;Locus_id=Os02g0550050;Note=Hypothetical protein.;Transcript_evidence=tplb0059h12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0550050-00
Chr02	irgsp1_rep	five_prime_UTR	20679304	20679479	.	-	.	Parent=Os02t0550050-00
Chr02	irgsp1_rep	five_prime_UTR	20678501	20679012	.	-	.	Parent=Os02t0550050-00
Chr02	irgsp1_rep	five_prime_UTR	20677543	20678255	.	-	.	Parent=Os02t0550050-00
Chr02	irgsp1_rep	CDS	20677252	20677542	.	-	0	Parent=Os02t0550050-00
Chr02	irgsp1_rep	three_prime_UTR	20676853	20677251	.	-	.	Parent=Os02t0550050-00
Chr02	irgsp1_rep	mRNA	20685666	20687790	.	-	.	ID=Os02t0550100-01;Name=Os02t0550100-01;Locus_id=Os02g0550100;Note=Similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (EC 3.6.3.14) (V- ATPase 16 kDa proteolipid subunit) (Fragment).;Transcript_evidence=AK099459 (DDBJ%2C Best hit);ORF_evidence=B4FUB9 (UniProt);GO=Biological Process: ATP hydrolysis coupled proton transport (GO:0015991),Cellular Component: proton-transporting two-sector ATPase complex%2C proton-transporting domain (GO:0033177),Cellular Component: proton-transporting V-type ATPase%2C V0 domain (GO:0033179),Molecular Function: hydrogen ion transmembrane transporter activity (GO:0015078);InterPro=ATPase%2C V0 complex%2C proteolipid subunit C (IPR000245),ATPase%2C F0/V0 complex%2C subunit C (IPR002379),ATPase%2C V0 complex%2C proteolipid subunit C%2C eukaryotic (IPR011555);NIAS_FLcDNA=J013023C24;Expression=AK099459;TENOR=Os02t0550100-01;KEGG=Os02t0550100-01 (EC:3.6.3.14)
Chr02	irgsp1_rep	five_prime_UTR	20687662	20687790	.	-	.	Parent=Os02t0550100-01
Chr02	irgsp1_rep	CDS	20687291	20687661	.	-	0	Parent=Os02t0550100-01
Chr02	irgsp1_rep	CDS	20685913	20686045	.	-	1	Parent=Os02t0550100-01
Chr02	irgsp1_rep	three_prime_UTR	20685666	20685912	.	-	.	Parent=Os02t0550100-01
Chr02	irgsp1_rep	mRNA	20700388	20702751	.	+	.	ID=Os02t0550300-00;Name=Os02t0550300-00;Locus_id=Os02g0550300;Oryzabase Gene Symbol Synonym(s)=PDIL5%3B3%2C PDIL5-3%2C PDIL 5-3%2C OsPDIL5-3;Oryzabase Gene Name Synonym(s)=PROTEIN DISULFIDE ISOMERASE-LIKE 5%3B3%2C PROTEIN DISULFIDE ISOMERASE-LIKE 5-3%2C PDI-like protein 5-3;Note=PDIL5-3 - Zea mays protein disulfide isomerase.;Transcript_evidence=AK249445 (DDBJ);ORF_evidence=Q0E0I1 (UniProt);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Thioredoxin (IPR005746),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766),Thioredoxin%2C conserved site (IPR017937);Oryzabase=11904;TENOR=Os02t0550300-00;KEGG=Os02t0550300-00
Chr02	irgsp1_rep	CDS	20700388	20700639	.	+	0	Parent=Os02t0550300-00
Chr02	irgsp1_rep	CDS	20701108	20701211	.	+	0	Parent=Os02t0550300-00
Chr02	irgsp1_rep	CDS	20701299	20701672	.	+	1	Parent=Os02t0550300-00
Chr02	irgsp1_rep	CDS	20701911	20702215	.	+	2	Parent=Os02t0550300-00
Chr02	irgsp1_rep	CDS	20702459	20702698	.	+	0	Parent=Os02t0550300-00
Chr02	irgsp1_rep	three_prime_UTR	20702699	20702751	.	+	.	Parent=Os02t0550300-00
Chr02	irgsp1_rep	mRNA	20703718	20704907	.	-	.	ID=Os02t0550400-01;Name=Os02t0550400-01;Locus_id=Os02g0550400;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK108298 (DDBJ%2C Best hit);ORF_evidence=B6TY66 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=002-141-E09;Expression=AK108298;TENOR=Os02t0550400-01;KEGG=Os02t0550400-01
Chr02	irgsp1_rep	five_prime_UTR	20704897	20704907	.	-	.	Parent=Os02t0550400-01
Chr02	irgsp1_rep	CDS	20703904	20704896	.	-	0	Parent=Os02t0550400-01
Chr02	irgsp1_rep	three_prime_UTR	20703718	20703903	.	-	.	Parent=Os02t0550400-01
Chr02	irgsp1_rep	mRNA	20706626	20711448	.	+	.	ID=Os02t0550500-00;Name=Os02t0550500-00;Locus_id=Os02g0550500;Note=Hypothetical conserved gene.;Transcript_evidence=AK103669 (DDBJ%2C Secondary hit);ORF_evidence=Q7FAF2 (UniProt);Expression=AK103669;TENOR=Os02t0550500-00;KEGG=Os02t0550500-00
Chr02	irgsp1_rep	five_prime_UTR	20706626	20706715	.	+	.	Parent=Os02t0550500-00
Chr02	irgsp1_rep	five_prime_UTR	20707296	20707392	.	+	.	Parent=Os02t0550500-00
Chr02	irgsp1_rep	five_prime_UTR	20707951	20708027	.	+	.	Parent=Os02t0550500-00
Chr02	irgsp1_rep	five_prime_UTR	20708460	20708721	.	+	.	Parent=Os02t0550500-00
Chr02	irgsp1_rep	CDS	20708722	20709237	.	+	0	Parent=Os02t0550500-00
Chr02	irgsp1_rep	three_prime_UTR	20709238	20709305	.	+	.	Parent=Os02t0550500-00
Chr02	irgsp1_rep	three_prime_UTR	20709327	20711448	.	+	.	Parent=Os02t0550500-00
Chr02	irgsp1_rep	mRNA	20717898	20721731	.	-	.	ID=Os02t0550600-01;Name=Os02t0550600-01;Locus_id=Os02g0550600;CGSNL Gene Symbol=NIN8;CGSNL Gene Name=NEUTRAL/ALKALINE INVERTASE 8;Oryzabase Gene Symbol Synonym(s)=OsNIN8;Oryzabase Gene Name Synonym(s)=neutral/alkaline invertase 8;Note=Plant neutral invertase family protein.;Transcript_evidence=AK102741 (DDBJ%2C Best hit);ORF_evidence=Q1WLP5 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Plant neutral invertase (IPR006937),Six-hairpin glycosidase-like (IPR008928);NIAS_FLcDNA=J033106F23;Oryzabase=14673;Expression=AK102741;TENOR=Os02t0550600-01;KEGG=Os02t0550600-01
Chr02	irgsp1_rep	five_prime_UTR	20721564	20721731	.	-	.	Parent=Os02t0550600-01
Chr02	irgsp1_rep	CDS	20721162	20721563	.	-	0	Parent=Os02t0550600-01
Chr02	irgsp1_rep	CDS	20720615	20721046	.	-	0	Parent=Os02t0550600-01
Chr02	irgsp1_rep	CDS	20719217	20719775	.	-	0	Parent=Os02t0550600-01
Chr02	irgsp1_rep	CDS	20718490	20718785	.	-	2	Parent=Os02t0550600-01
Chr02	irgsp1_rep	three_prime_UTR	20717898	20718489	.	-	.	Parent=Os02t0550600-01
Chr02	irgsp1_rep	mRNA	20718571	20721049	.	+	.	ID=Os02t0550650-00;Name=Os02t0550650-00;Locus_id=Os02g0550650;Note=Hypothetical protein.;Transcript_evidence=tplb0038i24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0550650-00
Chr02	irgsp1_rep	five_prime_UTR	20718571	20718779	.	+	.	Parent=Os02t0550650-00
Chr02	irgsp1_rep	five_prime_UTR	20719204	20719760	.	+	.	Parent=Os02t0550650-00
Chr02	irgsp1_rep	five_prime_UTR	20720597	20720630	.	+	.	Parent=Os02t0550650-00
Chr02	irgsp1_rep	CDS	20720631	20721049	.	+	0	Parent=Os02t0550650-00
Chr02	irgsp1_rep	mRNA	20728337	20731638	.	-	.	ID=Os02t0550700-01;Name=Os02t0550700-01;Locus_id=Os02g0550700;CGSNL Gene Symbol=CER7;CGSNL Gene Name=ECERIFERUM 7;Oryzabase Gene Symbol Synonym(s)=OsCER7;Oryzabase Gene Name Synonym(s)=ECERIFERUM7;Note=Similar to Nucleolar autoantigen-like protein.;Transcript_evidence=AK071257 (DDBJ%2C Best hit);ORF_evidence=A2X5Y3 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Molecular Function: RNA binding (GO:0003723);InterPro=Exoribonuclease%2C phosphorolytic domain 1 (IPR001247),Exoribonuclease%2C phosphorolytic domain 2 (IPR015847),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=J023083L07;Oryzabase=19165;Expression=AK071257;TENOR=Os02t0550700-01;KEGG=Os02t0550700-01
Chr02	irgsp1_rep	five_prime_UTR	20731564	20731638	.	-	.	Parent=Os02t0550700-01
Chr02	irgsp1_rep	CDS	20731433	20731563	.	-	0	Parent=Os02t0550700-01
Chr02	irgsp1_rep	CDS	20731124	20731333	.	-	1	Parent=Os02t0550700-01
Chr02	irgsp1_rep	CDS	20730936	20731031	.	-	1	Parent=Os02t0550700-01
Chr02	irgsp1_rep	CDS	20730727	20730841	.	-	1	Parent=Os02t0550700-01
Chr02	irgsp1_rep	CDS	20730269	20730349	.	-	0	Parent=Os02t0550700-01
Chr02	irgsp1_rep	CDS	20729979	20730167	.	-	0	Parent=Os02t0550700-01
Chr02	irgsp1_rep	CDS	20729673	20729838	.	-	0	Parent=Os02t0550700-01
Chr02	irgsp1_rep	CDS	20728812	20729011	.	-	2	Parent=Os02t0550700-01
Chr02	irgsp1_rep	three_prime_UTR	20728785	20728811	.	-	.	Parent=Os02t0550700-01
Chr02	irgsp1_rep	three_prime_UTR	20728337	20728697	.	-	.	Parent=Os02t0550700-01
Chr02	irgsp1_rep	mRNA	20734076	20737316	.	+	.	ID=Os02t0550800-01;Name=Os02t0550800-01;Locus_id=Os02g0550800;CGSNL Gene Symbol=AMT3%3B3;CGSNL Gene Name=AMMONIUM TRANSPORTER 3%3B3;Oryzabase Gene Symbol Synonym(s)=OsAMT3%3B3%2C AMT3%3B3%2C OsAMT3.3;Oryzabase Gene Name Synonym(s)=AMMONIUM TRANSPORTER 3%3B3%2C Ammonium transporter 3 member 3;Note=Ammonium transporter family protein.;Transcript_evidence=AK108711 (DDBJ%2C Best hit);ORF_evidence=Q69T29 (UniProt);GO=Biological Process: ammonium transmembrane transport (GO:0072488),Cellular Component: membrane (GO:0016020),Molecular Function: ammonium transmembrane transporter activity (GO:0008519);InterPro=Ammonium transporter (IPR001905),Ammonium transporter%2C conserved site (IPR018047),Ammonium transporter AmtB-like (IPR024041);NIAS_FLcDNA=002-150-A12;Oryzabase=9305;Expression=AK108711;TENOR=Os02t0550800-01;KEGG=Os02t0550800-01
Chr02	irgsp1_rep	five_prime_UTR	20734076	20734354	.	+	.	Parent=Os02t0550800-01
Chr02	irgsp1_rep	five_prime_UTR	20734546	20734650	.	+	.	Parent=Os02t0550800-01
Chr02	irgsp1_rep	CDS	20734651	20735298	.	+	0	Parent=Os02t0550800-01
Chr02	irgsp1_rep	CDS	20735378	20735663	.	+	0	Parent=Os02t0550800-01
Chr02	irgsp1_rep	CDS	20736766	20737274	.	+	2	Parent=Os02t0550800-01
Chr02	irgsp1_rep	three_prime_UTR	20737275	20737316	.	+	.	Parent=Os02t0550800-01
Chr02	irgsp1_rep	mRNA	20734672	20737223	.	-	.	ID=Os02t0550850-00;Name=Os02t0550850-00;Locus_id=Os02g0550850;Note=Hypothetical gene.;Transcript_evidence=BT054429 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0550850-00;KEGG=Os02t0550850-00
Chr02	irgsp1_rep	five_prime_UTR	20736741	20737223	.	-	.	Parent=Os02t0550850-00
Chr02	irgsp1_rep	five_prime_UTR	20735650	20735720	.	-	.	Parent=Os02t0550850-00
Chr02	irgsp1_rep	CDS	20735371	20735649	.	-	0	Parent=Os02t0550850-00
Chr02	irgsp1_rep	CDS	20735292	20735294	.	-	0	Parent=Os02t0550850-00
Chr02	irgsp1_rep	three_prime_UTR	20734672	20735291	.	-	.	Parent=Os02t0550850-00
Chr02	irgsp1_rep	mRNA	20738174	20741031	.	-	.	ID=Os02t0550900-01;Name=Os02t0550900-01;Locus_id=Os02g0550900;Note=FAR1 DNA binding domain domain containing protein.;Transcript_evidence=AK068291 (DDBJ%2C Best hit);ORF_evidence=B9F0H6 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=FAR1 DNA binding domain (IPR004330),Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);NIAS_FLcDNA=J013149F05;TENOR=Os02t0550900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	20741021	20741031	.	-	.	Parent=Os02t0550900-01
Chr02	irgsp1_rep	CDS	20740864	20741020	.	-	0	Parent=Os02t0550900-01
Chr02	irgsp1_rep	CDS	20739132	20740420	.	-	2	Parent=Os02t0550900-01
Chr02	irgsp1_rep	CDS	20738319	20739077	.	-	0	Parent=Os02t0550900-01
Chr02	irgsp1_rep	three_prime_UTR	20738174	20738318	.	-	.	Parent=Os02t0550900-01
Chr02	irgsp1_rep	mRNA	20737914	20741005	.	-	.	ID=Os02t0550900-02;Name=Os02t0550900-02;Locus_id=Os02g0550900;Note=Hypothetical conserved gene.;Transcript_evidence=AK102807 (DDBJ%2C Best hit),AK106638 (DDBJ%2C Best hit);ORF_evidence=B9F0H6 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=FAR1 DNA binding domain (IPR004330),Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);NIAS_FLcDNA=J033108J05,002-113-E01;Expression=AK102807;TENOR=Os02t0550900-02;KEGG=Os02t0550900-02
Chr02	irgsp1_rep	CDS	20740864	20741005	.	-	0	Parent=Os02t0550900-02
Chr02	irgsp1_rep	CDS	20738319	20740420	.	-	2	Parent=Os02t0550900-02
Chr02	irgsp1_rep	three_prime_UTR	20737914	20738318	.	-	.	Parent=Os02t0550900-02
Chr02	irgsp1_rep	mRNA	20746335	20751320	.	-	.	ID=Os02t0551100-01;Name=Os02t0551100-01;Locus_id=Os02g0551100;RAP-DB Gene Symbol Synonym(s)=SAPK6%2C OsSAPK6%2C OSRK1;RAP-DB Gene Name Synonym(s)=STRESS/ABA-ACTIVATED PROTEIN KINASE 6%2C stress/ABA-activated protein kinase 6%2C Stress-Activated Protein Kinase 6;CGSNL Gene Symbol=SAPK6;CGSNL Gene Name=STRESS/ABA-ACTIVATED PROTEIN KINASE 6;Oryzabase Gene Symbol Synonym(s)=OsSAPK6%2C OSRK1;Oryzabase Gene Name Synonym(s)=stress/ABA-activated protein kinase 6%2C Stress-Activated Protein Kinase 6;Note=Serine/threonine protein kinase%2C Dehydration-inducible SNF1-related protein kinase 2%2C Hyperosmotic stress response%2C Abscisic acid (ABA) signaling;Transcript_evidence=AB125307,AK067395,DQ285022 (Ilpoombyeo);ORF_evidence=Q6ZI44;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine/threonine/dual specificity protein kinase%2C catalytic  domain (IPR002290),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J013105K04;Manual Curation=December 15%2C 2015;Literature_PMID=15084714,16977424;Oryzabase=9814;Expression=AK067395;TENOR=Os02t0551100-01;KEGG=Os02t0551100-01 (EC:2.7.1.37, EC:2.7.11.11)
Chr02	irgsp1_rep	five_prime_UTR	20751191	20751320	.	-	.	Parent=Os02t0551100-01
Chr02	irgsp1_rep	CDS	20751071	20751190	.	-	0	Parent=Os02t0551100-01
Chr02	irgsp1_rep	CDS	20750900	20750974	.	-	0	Parent=Os02t0551100-01
Chr02	irgsp1_rep	CDS	20750681	20750782	.	-	0	Parent=Os02t0551100-01
Chr02	irgsp1_rep	CDS	20750483	20750536	.	-	0	Parent=Os02t0551100-01
Chr02	irgsp1_rep	CDS	20750279	20750371	.	-	0	Parent=Os02t0551100-01
Chr02	irgsp1_rep	CDS	20749755	20749847	.	-	0	Parent=Os02t0551100-01
Chr02	irgsp1_rep	CDS	20747323	20747427	.	-	0	Parent=Os02t0551100-01
Chr02	irgsp1_rep	CDS	20747132	20747230	.	-	0	Parent=Os02t0551100-01
Chr02	irgsp1_rep	CDS	20746699	20747055	.	-	0	Parent=Os02t0551100-01
Chr02	irgsp1_rep	three_prime_UTR	20746335	20746698	.	-	.	Parent=Os02t0551100-01
Chr02	irgsp1_rep	mRNA	20763399	20767582	.	-	.	ID=Os02t0551400-01;Name=Os02t0551400-01;Locus_id=Os02g0551400;Note=Homeodomain-related domain containing protein.;Transcript_evidence=AK068448 (DDBJ%2C Best hit);ORF_evidence=A3A7W9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J013152C15;Expression=AK068448;TENOR=Os02t0551400-01;KEGG=Os02t0551400-01
Chr02	irgsp1_rep	five_prime_UTR	20767476	20767582	.	-	.	Parent=Os02t0551400-01
Chr02	irgsp1_rep	CDS	20767339	20767475	.	-	0	Parent=Os02t0551400-01
Chr02	irgsp1_rep	CDS	20767011	20767209	.	-	1	Parent=Os02t0551400-01
Chr02	irgsp1_rep	CDS	20766770	20766856	.	-	0	Parent=Os02t0551400-01
Chr02	irgsp1_rep	CDS	20765583	20765951	.	-	0	Parent=Os02t0551400-01
Chr02	irgsp1_rep	CDS	20765059	20765203	.	-	0	Parent=Os02t0551400-01
Chr02	irgsp1_rep	CDS	20763749	20764971	.	-	2	Parent=Os02t0551400-01
Chr02	irgsp1_rep	three_prime_UTR	20763399	20763748	.	-	.	Parent=Os02t0551400-01
Chr02	irgsp1_rep	mRNA	20776247	20777084	.	+	.	ID=Os02t0551600-01;Name=Os02t0551600-01;Locus_id=Os02g0551600;Note=Conserved hypothetical protein.;Transcript_evidence=AK063102 (DDBJ%2C Best hit);ORF_evidence=A2X5Y8 (UniProt);NIAS_FLcDNA=001-111-C10;TENOR=Os02t0551600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	20776247	20776264	.	+	.	Parent=Os02t0551600-01
Chr02	irgsp1_rep	CDS	20776265	20776915	.	+	0	Parent=Os02t0551600-01
Chr02	irgsp1_rep	three_prime_UTR	20776916	20777084	.	+	.	Parent=Os02t0551600-01
Chr02	irgsp1_rep	mRNA	20782334	20785252	.	-	.	ID=Os02t0551700-01;Name=Os02t0551700-01;Locus_id=Os02g0551700;CGSNL Gene Symbol=DUF668-3;CGSNL Gene Name=DUF668 FAMILY MEMBER 3;Oryzabase Gene Symbol Synonym(s)=OsDUF668-3;Oryzabase Gene Name Synonym(s)=DUF668 family member 3;Note=Protein of unknown function DUF668 domain containing protein.;Transcript_evidence=AK106428 (DDBJ%2C Best hit);ORF_evidence=B8AJE0 (UniProt);InterPro=Protein of unknown function DUF668 (IPR007700);NIAS_FLcDNA=002-103-B12;Oryzabase=23479;TENOR=Os02t0551700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	20785252	20785252	.	-	.	Parent=Os02t0551700-01
Chr02	irgsp1_rep	CDS	20785153	20785251	.	-	0	Parent=Os02t0551700-01
Chr02	irgsp1_rep	CDS	20784965	20785034	.	-	0	Parent=Os02t0551700-01
Chr02	irgsp1_rep	CDS	20784753	20784856	.	-	2	Parent=Os02t0551700-01
Chr02	irgsp1_rep	CDS	20784136	20784252	.	-	0	Parent=Os02t0551700-01
Chr02	irgsp1_rep	CDS	20783978	20784054	.	-	0	Parent=Os02t0551700-01
Chr02	irgsp1_rep	CDS	20783848	20783892	.	-	1	Parent=Os02t0551700-01
Chr02	irgsp1_rep	CDS	20782565	20783189	.	-	1	Parent=Os02t0551700-01
Chr02	irgsp1_rep	three_prime_UTR	20782334	20782564	.	-	.	Parent=Os02t0551700-01
Chr02	irgsp1_rep	mRNA	20782428	20783315	.	+	.	ID=Os02t0551801-00;Name=Os02t0551801-00;Locus_id=Os02g0551801;Note=Hypothetical gene.;Transcript_evidence=CT833294 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os02t0551801-00;KEGG=Os02t0551801-00
Chr02	irgsp1_rep	five_prime_UTR	20782428	20782543	.	+	.	Parent=Os02t0551801-00
Chr02	irgsp1_rep	CDS	20782544	20782810	.	+	0	Parent=Os02t0551801-00
Chr02	irgsp1_rep	three_prime_UTR	20782811	20783315	.	+	.	Parent=Os02t0551801-00
Chr02	irgsp1_rep	mRNA	20800953	20804395	.	+	.	ID=Os02t0551900-01;Name=Os02t0551900-01;Locus_id=Os02g0551900;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK103760 (DDBJ%2C Best hit);ORF_evidence=B6TPH8 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J033143G04;Expression=AK103760;TENOR=Os02t0551900-01;KEGG=Os02t0551900-01
Chr02	irgsp1_rep	five_prime_UTR	20800953	20801255	.	+	.	Parent=Os02t0551900-01
Chr02	irgsp1_rep	CDS	20801256	20801302	.	+	0	Parent=Os02t0551900-01
Chr02	irgsp1_rep	CDS	20801426	20801484	.	+	1	Parent=Os02t0551900-01
Chr02	irgsp1_rep	CDS	20802774	20802973	.	+	2	Parent=Os02t0551900-01
Chr02	irgsp1_rep	CDS	20803083	20803172	.	+	0	Parent=Os02t0551900-01
Chr02	irgsp1_rep	CDS	20803472	20803615	.	+	0	Parent=Os02t0551900-01
Chr02	irgsp1_rep	CDS	20803695	20804186	.	+	0	Parent=Os02t0551900-01
Chr02	irgsp1_rep	three_prime_UTR	20804187	20804395	.	+	.	Parent=Os02t0551900-01
Chr02	irgsp1_rep	mRNA	20811340	20815581	.	+	.	ID=Os02t0552000-01;Name=Os02t0552000-01;Locus_id=Os02g0552000;Note=Similar to Transmembrane protein TM9SF3 (Fragment).;Transcript_evidence=AK067736 (DDBJ%2C Best hit);ORF_evidence=B6SY54 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Nonaspanin (TM9SF) (IPR004240);NIAS_FLcDNA=J013117E08;Expression=AK067736;TENOR=Os02t0552000-01;KEGG=Os02t0552000-01
Chr02	irgsp1_rep	five_prime_UTR	20811340	20811454	.	+	.	Parent=Os02t0552000-01
Chr02	irgsp1_rep	CDS	20811455	20811556	.	+	0	Parent=Os02t0552000-01
Chr02	irgsp1_rep	CDS	20812104	20812296	.	+	0	Parent=Os02t0552000-01
Chr02	irgsp1_rep	CDS	20812406	20812510	.	+	2	Parent=Os02t0552000-01
Chr02	irgsp1_rep	CDS	20812660	20812677	.	+	2	Parent=Os02t0552000-01
Chr02	irgsp1_rep	CDS	20812753	20812841	.	+	2	Parent=Os02t0552000-01
Chr02	irgsp1_rep	CDS	20812922	20813074	.	+	0	Parent=Os02t0552000-01
Chr02	irgsp1_rep	CDS	20813234	20813368	.	+	0	Parent=Os02t0552000-01
Chr02	irgsp1_rep	CDS	20813455	20813621	.	+	0	Parent=Os02t0552000-01
Chr02	irgsp1_rep	CDS	20814125	20814219	.	+	1	Parent=Os02t0552000-01
Chr02	irgsp1_rep	CDS	20814313	20814686	.	+	2	Parent=Os02t0552000-01
Chr02	irgsp1_rep	CDS	20814783	20815056	.	+	0	Parent=Os02t0552000-01
Chr02	irgsp1_rep	CDS	20815138	20815205	.	+	2	Parent=Os02t0552000-01
Chr02	irgsp1_rep	three_prime_UTR	20815206	20815581	.	+	.	Parent=Os02t0552000-01
Chr02	irgsp1_rep	mRNA	20811365	20815581	.	+	.	ID=Os02t0552000-02;Name=Os02t0552000-02;Locus_id=Os02g0552000;Note=Similar to Transmembrane protein TM9SF3 (Fragment).;Transcript_evidence=AK099161 (DDBJ%2C Best hit);ORF_evidence=B6SY54 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Nonaspanin (TM9SF) (IPR004240);NIAS_FLcDNA=J023068L16;Expression=AK099161;TENOR=Os02t0552000-02;KEGG=Os02t0552000-02
Chr02	irgsp1_rep	five_prime_UTR	20811365	20811454	.	+	.	Parent=Os02t0552000-02
Chr02	irgsp1_rep	CDS	20811455	20811556	.	+	0	Parent=Os02t0552000-02
Chr02	irgsp1_rep	CDS	20812104	20812296	.	+	0	Parent=Os02t0552000-02
Chr02	irgsp1_rep	CDS	20812406	20812510	.	+	2	Parent=Os02t0552000-02
Chr02	irgsp1_rep	CDS	20812660	20812677	.	+	2	Parent=Os02t0552000-02
Chr02	irgsp1_rep	CDS	20812753	20812841	.	+	2	Parent=Os02t0552000-02
Chr02	irgsp1_rep	CDS	20812922	20813074	.	+	0	Parent=Os02t0552000-02
Chr02	irgsp1_rep	CDS	20813234	20813368	.	+	0	Parent=Os02t0552000-02
Chr02	irgsp1_rep	CDS	20813455	20813621	.	+	0	Parent=Os02t0552000-02
Chr02	irgsp1_rep	CDS	20814125	20814219	.	+	1	Parent=Os02t0552000-02
Chr02	irgsp1_rep	CDS	20814313	20814686	.	+	2	Parent=Os02t0552000-02
Chr02	irgsp1_rep	CDS	20814783	20815056	.	+	0	Parent=Os02t0552000-02
Chr02	irgsp1_rep	CDS	20815138	20815205	.	+	2	Parent=Os02t0552000-02
Chr02	irgsp1_rep	three_prime_UTR	20815206	20815581	.	+	.	Parent=Os02t0552000-02
Chr02	irgsp1_rep	mRNA	20816006	20820554	.	+	.	ID=Os02t0552100-01;Name=Os02t0552100-01;Locus_id=Os02g0552100;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK100075 (DDBJ%2C Best hit);ORF_evidence=A2X5Z2 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013170L14;Expression=AK100075;TENOR=Os02t0552100-01;KEGG=Os02t0552100-01
Chr02	irgsp1_rep	five_prime_UTR	20816006	20816100	.	+	.	Parent=Os02t0552100-01
Chr02	irgsp1_rep	CDS	20816101	20817861	.	+	0	Parent=Os02t0552100-01
Chr02	irgsp1_rep	three_prime_UTR	20817862	20817963	.	+	.	Parent=Os02t0552100-01
Chr02	irgsp1_rep	three_prime_UTR	20818129	20818215	.	+	.	Parent=Os02t0552100-01
Chr02	irgsp1_rep	three_prime_UTR	20818410	20818645	.	+	.	Parent=Os02t0552100-01
Chr02	irgsp1_rep	three_prime_UTR	20818756	20819219	.	+	.	Parent=Os02t0552100-01
Chr02	irgsp1_rep	three_prime_UTR	20820222	20820554	.	+	.	Parent=Os02t0552100-01
Chr02	irgsp1_rep	mRNA	20823483	20824444	.	+	.	ID=Os02t0552150-00;Name=Os02t0552150-00;Locus_id=Os02g0552150;Note=Hypothetical protein.;Transcript_evidence=EU946406 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0552150-00
Chr02	irgsp1_rep	five_prime_UTR	20823483	20823583	.	+	.	Parent=Os02t0552150-00
Chr02	irgsp1_rep	CDS	20823584	20823829	.	+	0	Parent=Os02t0552150-00
Chr02	irgsp1_rep	three_prime_UTR	20823830	20824444	.	+	.	Parent=Os02t0552150-00
Chr02	irgsp1_rep	mRNA	20823499	20824518	.	-	.	ID=Os02t0552200-00;Name=Os02t0552200-00;Locus_id=Os02g0552200;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6ZI31 (UniProt);TENOR=Os02t0552200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	20823499	20824518	.	-	0	Parent=Os02t0552200-00
Chr02	irgsp1_rep	mRNA	20832815	20835431	.	-	.	ID=Os02t0552400-00;Name=Os02t0552400-00;Locus_id=Os02g0552400;Note=Similar to electron carrier/ ubiquinol-cytoChrome-c reductase.;Transcript_evidence=CU405850 (DDBJ%2C Best hit);ORF_evidence=Q6ZI30 (UniProt);TENOR=Os02t0552400-00;KEGG=Os02t0552400-00
Chr02	irgsp1_rep	five_prime_UTR	20835353	20835431	.	-	.	Parent=Os02t0552400-00
Chr02	irgsp1_rep	CDS	20835235	20835352	.	-	0	Parent=Os02t0552400-00
Chr02	irgsp1_rep	CDS	20834999	20835140	.	-	2	Parent=Os02t0552400-00
Chr02	irgsp1_rep	CDS	20833118	20833145	.	-	1	Parent=Os02t0552400-00
Chr02	irgsp1_rep	three_prime_UTR	20832815	20833117	.	-	.	Parent=Os02t0552400-00
Chr02	irgsp1_rep	mRNA	20832858	20835330	.	+	.	ID=Os02t0552450-00;Name=Os02t0552450-00;Locus_id=Os02g0552450;Note=Non-protein coding transcript.;Transcript_evidence=BT018938 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0552450-00
Chr02	irgsp1_rep	exon	20832858	20833147	.	+	.	Parent=Os02t0552450-00
Chr02	irgsp1_rep	exon	20834992	20835132	.	+	.	Parent=Os02t0552450-00
Chr02	irgsp1_rep	exon	20835224	20835330	.	+	.	Parent=Os02t0552450-00
Chr02	irgsp1_rep	mRNA	20839690	20844713	.	+	.	ID=Os02t0552550-01;Name=Os02t0552550-01;Locus_id=Os02g0552550;Note=Hypothetical gene.;Transcript_evidence=AK241212 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065122M15;TENOR=Os02t0552550-01;KEGG=Os02t0552550-01
Chr02	irgsp1_rep	five_prime_UTR	20839690	20841009	.	+	.	Parent=Os02t0552550-01
Chr02	irgsp1_rep	five_prime_UTR	20841096	20841990	.	+	.	Parent=Os02t0552550-01
Chr02	irgsp1_rep	CDS	20841991	20842272	.	+	0	Parent=Os02t0552550-01
Chr02	irgsp1_rep	three_prime_UTR	20842273	20842629	.	+	.	Parent=Os02t0552550-01
Chr02	irgsp1_rep	three_prime_UTR	20843194	20843404	.	+	.	Parent=Os02t0552550-01
Chr02	irgsp1_rep	three_prime_UTR	20843866	20844713	.	+	.	Parent=Os02t0552550-01
Chr02	irgsp1_rep	mRNA	20842399	20844674	.	-	.	ID=Os02t0552600-00;Name=Os02t0552600-00;Locus_id=Os02g0552600;Oryzabase Gene Symbol Synonym(s)=Ogg;Oryzabase Gene Name Synonym(s)=8-oxoguanine DNA glycosylase;Note=Similar to F8K7.14 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q9XI06 (UniProt);GO=Biological Process: DNA repair (GO:0006281),Biological Process: base-excision repair (GO:0006284),Biological Process: nucleotide-excision repair (GO:0006289),Molecular Function: DNA binding (GO:0003677),Molecular Function: damaged DNA binding (GO:0003684),Molecular Function: catalytic activity (GO:0003824),Molecular Function: oxidized purine base lesion DNA N-glycosylase activity (GO:0008534);InterPro=HhH-GPD domain (IPR003265),DNA glycosylase (IPR011257),Transcription factor TFIID%2C C-terminal/DNA glycosylase%2C N-terminal (IPR012294),8-oxoguanine DNA glycosylase%2C N-terminal (IPR012904),Helix-turn-helix%2C base-excision DNA repair%2C C-terminal (IPR023170);Oryzabase=21263;TENOR=Os02t0552600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	20843866	20844674	.	-	0	Parent=Os02t0552600-00
Chr02	irgsp1_rep	CDS	20843194	20843404	.	-	1	Parent=Os02t0552600-00
Chr02	irgsp1_rep	CDS	20842399	20842629	.	-	0	Parent=Os02t0552600-00
Chr02	irgsp1_rep	mRNA	20846435	20847993	.	+	.	ID=Os02t0552700-01;Name=Os02t0552700-01;Locus_id=Os02g0552700;Oryzabase Gene Symbol Synonym(s)=OsZFP6%2C ZFP6;Oryzabase Gene Name Synonym(s)=CCHC-type zinc finger protein 6;Note=Conserved hypothetical protein.;Transcript_evidence=AK068488 (DDBJ%2C Best hit);ORF_evidence=B8ADB0 (UniProt);NIAS_FLcDNA=J013157D04;Oryzabase=18334;TENOR=Os02t0552700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	20846435	20846618	.	+	.	Parent=Os02t0552700-01
Chr02	irgsp1_rep	CDS	20846619	20846849	.	+	0	Parent=Os02t0552700-01
Chr02	irgsp1_rep	three_prime_UTR	20846850	20847993	.	+	.	Parent=Os02t0552700-01
Chr02	irgsp1_rep	mRNA	20857044	20858995	.	-	.	ID=Os02t0553000-01;Name=Os02t0553000-01;Locus_id=Os02g0553000;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK241126 (DDBJ%2C Best hit);ORF_evidence=B9F0I4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Tyrosine-protein kinase%2C active site (IPR008266),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J065095N18;TENOR=Os02t0553000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	20858935	20858995	.	-	.	Parent=Os02t0553000-01
Chr02	irgsp1_rep	CDS	20857986	20858934	.	-	0	Parent=Os02t0553000-01
Chr02	irgsp1_rep	CDS	20857399	20857748	.	-	2	Parent=Os02t0553000-01
Chr02	irgsp1_rep	three_prime_UTR	20857044	20857398	.	-	.	Parent=Os02t0553000-01
Chr02	irgsp1_rep	mRNA	20868385	20872077	.	-	.	ID=Os02t0553200-01;Name=Os02t0553200-01;Locus_id=Os02g0553200;RAP-DB Gene Symbol Synonym(s)=APX8%2C OsAPx8%2C OsAPx08%2C OSAPX8%2C APx8%2C OsAPX8;RAP-DB Gene Name Synonym(s)=ASCORBATE PEROXIDASE 8%2C ascorbate peroxidase 8;CGSNL Gene Symbol=APX8;CGSNL Gene Name=ASCORBATE PEROXIDASE 8;Oryzabase Gene Symbol Synonym(s)=OsAPx8%2C OsAPx08%2C OSAPX8%2C APx8%2C OsAPX8;Oryzabase Gene Name Synonym(s)=ascorbate peroxidase 8;Note=Thylakoid membrane-bound ascorbate peroxidase%2C Tolerance to bacterial blight%2C Response to NaCl;Transcript_evidence=AB114856;ORF_evidence=Q69SV0;GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Haem peroxidase (IPR010255),Plant ascorbate peroxidase (IPR002207),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Peroxidases heam-ligand binding site (IPR019793);Manual Curation=September 7%2C 2016;Literature_PMID=27185545,17916638,16397796;Oryzabase=8958;TENOR=Os02t0553200-01;KEGG=Os02t0553200-01 (EC:1.11.1.11);B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	20872048	20872077	.	-	.	Parent=Os02t0553200-01
Chr02	irgsp1_rep	CDS	20871877	20872047	.	-	0	Parent=Os02t0553200-01
Chr02	irgsp1_rep	CDS	20871614	20871775	.	-	0	Parent=Os02t0553200-01
Chr02	irgsp1_rep	CDS	20871399	20871519	.	-	0	Parent=Os02t0553200-01
Chr02	irgsp1_rep	CDS	20871189	20871289	.	-	2	Parent=Os02t0553200-01
Chr02	irgsp1_rep	CDS	20871002	20871089	.	-	0	Parent=Os02t0553200-01
Chr02	irgsp1_rep	CDS	20870822	20870889	.	-	2	Parent=Os02t0553200-01
Chr02	irgsp1_rep	CDS	20870643	20870729	.	-	0	Parent=Os02t0553200-01
Chr02	irgsp1_rep	CDS	20869914	20869988	.	-	0	Parent=Os02t0553200-01
Chr02	irgsp1_rep	CDS	20869754	20869831	.	-	0	Parent=Os02t0553200-01
Chr02	irgsp1_rep	CDS	20869575	20869679	.	-	0	Parent=Os02t0553200-01
Chr02	irgsp1_rep	CDS	20868848	20869075	.	-	0	Parent=Os02t0553200-01
Chr02	irgsp1_rep	CDS	20868616	20868768	.	-	0	Parent=Os02t0553200-01
Chr02	irgsp1_rep	three_prime_UTR	20868385	20868615	.	-	.	Parent=Os02t0553200-01
Chr02	irgsp1_rep	mRNA	20877475	20878178	.	-	.	ID=Os02t0553400-01;Name=Os02t0553400-01;Locus_id=Os02g0553400;Note=Non-protein coding transcript.;Transcript_evidence=AK110958 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-174-A09;TENOR=Os02t0553400-01
Chr02	irgsp1_rep	exon	20877475	20878178	.	-	.	Parent=Os02t0553400-01
Chr02	irgsp1_rep	mRNA	20880412	20882550	.	+	.	ID=Os02t0553500-00;Name=Os02t0553500-00;Locus_id=Os02g0553500;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=FP100315 (DDBJ);ORF_evidence=B9F0I5 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);TENOR=Os02t0553500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	20880412	20880690	.	+	0	Parent=Os02t0553500-00
Chr02	irgsp1_rep	CDS	20881340	20881478	.	+	0	Parent=Os02t0553500-00
Chr02	irgsp1_rep	CDS	20881916	20881947	.	+	2	Parent=Os02t0553500-00
Chr02	irgsp1_rep	CDS	20882077	20882163	.	+	0	Parent=Os02t0553500-00
Chr02	irgsp1_rep	CDS	20882326	20882550	.	+	0	Parent=Os02t0553500-00
Chr02	irgsp1_rep	mRNA	20884277	20886475	.	+	.	ID=Os02t0553600-01;Name=Os02t0553600-01;Locus_id=Os02g0553600;Oryzabase Gene Symbol Synonym(s)=SI1;Oryzabase Gene Name Synonym(s)=sucrose induced 1;Note=Similar to RNA polymerase II transcriptional coactivator KIWI.;Transcript_evidence=AK072440 (DDBJ%2C Best hit);ORF_evidence=B6SQD0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: transcription coactivator activity (GO:0003713),Molecular Function: binding (GO:0005488);InterPro=Transcriptional coactivator p15 (IPR003173),ssDNA-binding transcriptional regulator (IPR009044);NIAS_FLcDNA=J023108D18;Oryzabase=14317;Expression=AK072440;TENOR=Os02t0553600-01;KEGG=Os02t0553600-01
Chr02	irgsp1_rep	five_prime_UTR	20884277	20884358	.	+	.	Parent=Os02t0553600-01
Chr02	irgsp1_rep	CDS	20884359	20884475	.	+	0	Parent=Os02t0553600-01
Chr02	irgsp1_rep	CDS	20884585	20884690	.	+	0	Parent=Os02t0553600-01
Chr02	irgsp1_rep	CDS	20885648	20885670	.	+	2	Parent=Os02t0553600-01
Chr02	irgsp1_rep	CDS	20886117	20886176	.	+	0	Parent=Os02t0553600-01
Chr02	irgsp1_rep	three_prime_UTR	20886177	20886475	.	+	.	Parent=Os02t0553600-01
Chr02	irgsp1_rep	mRNA	20896232	20899172	.	+	.	ID=Os02t0553802-01;Name=Os02t0553802-01;Locus_id=Os02g0553802;Note=Hypothetical conserved gene.;Transcript_evidence=AK287667 (DDBJ%2C Best hit);ORF_evidence=B8AJE9 (UniProt);NIAS_FLcDNA=J065117I11;TENOR=Os02t0553802-01
Chr02	irgsp1_rep	five_prime_UTR	20896232	20896433	.	+	.	Parent=Os02t0553802-01
Chr02	irgsp1_rep	five_prime_UTR	20896530	20896668	.	+	.	Parent=Os02t0553802-01
Chr02	irgsp1_rep	CDS	20896669	20899172	.	+	0	Parent=Os02t0553802-01
Chr02	irgsp1_rep	mRNA	20900191	20907175	.	+	.	ID=Os02t0554000-01;Name=Os02t0554000-01;Locus_id=Os02g0554000;CGSNL Gene Symbol=SDG725;CGSNL Gene Name=SET DOMAIN GROUP PROTEIN 725;Oryzabase Gene Symbol Synonym(s)=OsSDG725%2C OsSET8%2C ASHH2;Oryzabase Gene Name Synonym(s)=SET Domain Group Protein725%2C SET DOMAIN GROUP725%2C SET protein 8%2C "ABSENT%2C SMALL%2C OR HOMEOTIC DISCS 1 HOMOLOG 2";Note=SET domain domain containing protein.;Transcript_evidence=AK064575 (DDBJ%2C Best hit);ORF_evidence=B9F0I7 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: histone-lysine N-methyltransferase activity (GO:0018024);InterPro=SET domain (IPR001214),Post-SET domain (IPR003616),AWS (IPR006560),Zinc finger%2C CW-type (IPR011124);NIAS_FLcDNA=002-112-E05;Oryzabase=11165;TENOR=Os02t0554000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	20900191	20900326	.	+	0	Parent=Os02t0554000-01
Chr02	irgsp1_rep	CDS	20900422	20900620	.	+	2	Parent=Os02t0554000-01
Chr02	irgsp1_rep	CDS	20901541	20901680	.	+	1	Parent=Os02t0554000-01
Chr02	irgsp1_rep	CDS	20901790	20901869	.	+	2	Parent=Os02t0554000-01
Chr02	irgsp1_rep	CDS	20903160	20903291	.	+	0	Parent=Os02t0554000-01
Chr02	irgsp1_rep	CDS	20903365	20903481	.	+	0	Parent=Os02t0554000-01
Chr02	irgsp1_rep	CDS	20904115	20904207	.	+	0	Parent=Os02t0554000-01
Chr02	irgsp1_rep	CDS	20904487	20904564	.	+	0	Parent=Os02t0554000-01
Chr02	irgsp1_rep	CDS	20904768	20904824	.	+	0	Parent=Os02t0554000-01
Chr02	irgsp1_rep	CDS	20905149	20905818	.	+	0	Parent=Os02t0554000-01
Chr02	irgsp1_rep	CDS	20905901	20905956	.	+	2	Parent=Os02t0554000-01
Chr02	irgsp1_rep	CDS	20906493	20906569	.	+	0	Parent=Os02t0554000-01
Chr02	irgsp1_rep	CDS	20906641	20906723	.	+	1	Parent=Os02t0554000-01
Chr02	irgsp1_rep	CDS	20906814	20906932	.	+	2	Parent=Os02t0554000-01
Chr02	irgsp1_rep	three_prime_UTR	20906933	20907175	.	+	.	Parent=Os02t0554000-01
Chr02	irgsp1_rep	mRNA	20905774	20910475	.	+	.	ID=Os02t0554000-02;Name=Os02t0554000-02;Locus_id=Os02g0554000;CGSNL Gene Symbol=SDG725;CGSNL Gene Name=SET DOMAIN GROUP PROTEIN 725;Oryzabase Gene Symbol Synonym(s)=OsSDG725%2C OsSET8%2C ASHH2;Oryzabase Gene Name Synonym(s)=SET Domain Group Protein725%2C SET DOMAIN GROUP725%2C SET protein 8%2C "ABSENT%2C SMALL%2C OR HOMEOTIC DISCS 1 HOMOLOG 2";Note=Conserved hypothetical protein.;Transcript_evidence=AK106534 (DDBJ%2C Best hit);ORF_evidence=B9F0I7 (UniProt);NIAS_FLcDNA=002-108-B04;Oryzabase=11165;TENOR=Os02t0554000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	20905774	20905775	.	+	.	Parent=Os02t0554000-02
Chr02	irgsp1_rep	CDS	20905776	20905818	.	+	0	Parent=Os02t0554000-02
Chr02	irgsp1_rep	CDS	20905901	20905956	.	+	2	Parent=Os02t0554000-02
Chr02	irgsp1_rep	CDS	20906493	20906569	.	+	0	Parent=Os02t0554000-02
Chr02	irgsp1_rep	CDS	20906641	20906723	.	+	1	Parent=Os02t0554000-02
Chr02	irgsp1_rep	CDS	20906814	20906893	.	+	2	Parent=Os02t0554000-02
Chr02	irgsp1_rep	CDS	20907666	20907745	.	+	0	Parent=Os02t0554000-02
Chr02	irgsp1_rep	CDS	20908304	20908349	.	+	1	Parent=Os02t0554000-02
Chr02	irgsp1_rep	CDS	20909315	20910121	.	+	0	Parent=Os02t0554000-02
Chr02	irgsp1_rep	three_prime_UTR	20910122	20910475	.	+	.	Parent=Os02t0554000-02
Chr02	irgsp1_rep	mRNA	20913876	20919054	.	+	.	ID=Os02t0554100-01;Name=Os02t0554100-01;Locus_id=Os02g0554100;Note=Similar to UVB-resistance protein UVR8.;Transcript_evidence=AK060250 (DDBJ%2C Best hit),AK069920 (DDBJ%2C Best hit);ORF_evidence=B8AJF0 (UniProt);InterPro=Regulator of Chromosome condensation%2C RCC1 (IPR000408),Regulator of Chromosome condensation/beta-lactamase-inhibitor protein II (IPR009091);NIAS_FLcDNA=001-004-B02,J023039G23;TENOR=Os02t0554100-01
Chr02	irgsp1_rep	five_prime_UTR	20913876	20913909	.	+	.	Parent=Os02t0554100-01
Chr02	irgsp1_rep	CDS	20913910	20914033	.	+	0	Parent=Os02t0554100-01
Chr02	irgsp1_rep	CDS	20914109	20914307	.	+	2	Parent=Os02t0554100-01
Chr02	irgsp1_rep	CDS	20914391	20914537	.	+	1	Parent=Os02t0554100-01
Chr02	irgsp1_rep	CDS	20915289	20915370	.	+	1	Parent=Os02t0554100-01
Chr02	irgsp1_rep	CDS	20916148	20916303	.	+	0	Parent=Os02t0554100-01
Chr02	irgsp1_rep	CDS	20916554	20916727	.	+	0	Parent=Os02t0554100-01
Chr02	irgsp1_rep	CDS	20916884	20916955	.	+	0	Parent=Os02t0554100-01
Chr02	irgsp1_rep	CDS	20917618	20917689	.	+	0	Parent=Os02t0554100-01
Chr02	irgsp1_rep	CDS	20917928	20918046	.	+	0	Parent=Os02t0554100-01
Chr02	irgsp1_rep	CDS	20918146	20918231	.	+	1	Parent=Os02t0554100-01
Chr02	irgsp1_rep	CDS	20918353	20918405	.	+	2	Parent=Os02t0554100-01
Chr02	irgsp1_rep	CDS	20918682	20918759	.	+	0	Parent=Os02t0554100-01
Chr02	irgsp1_rep	three_prime_UTR	20918760	20919054	.	+	.	Parent=Os02t0554100-01
Chr02	irgsp1_rep	mRNA	20919649	20920293	.	-	.	ID=Os02t0554200-00;Name=Os02t0554200-00;Locus_id=Os02g0554200;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001047116.1 (RefSeq);TENOR=Os02t0554200-00;KEGG=Os02t0554200-00
Chr02	irgsp1_rep	CDS	20919649	20920293	.	-	0	Parent=Os02t0554200-00
Chr02	irgsp1_rep	mRNA	20921441	20932806	.	-	.	ID=Os02t0554300-01;Name=Os02t0554300-01;Locus_id=Os02g0554300;RAP-DB Gene Symbol Synonym(s)=GH1;RAP-DB Gene Name Synonym(s)=GRAIN NUMBER AND PLANT HEIGHT1;CGSNL Gene Symbol=GH1;CGSNL Gene Name=GRAIN NUMBER AND PLANT HEIGHT1;Oryzabase Gene Symbol Synonym(s)=OsGH1;Note=Suppressor of actin (SAC) domain-containing phosphatase%2C Control of rice development via hydrolyzing phosphoinositides (PIs);Transcript_evidence=AK101886;ORF_evidence=Q69SU0;GO=Molecular Function: phosphoric ester hydrolase activity (GO:0042578);InterPro=SAC domain (IPR002013);NIAS_FLcDNA=J033070L24;Manual Curation=January 6%2C 2020;Literature_PMID=31882455;Oryzabase=23460;Expression=AK101886;TENOR=Os02t0554300-01;KEGG=Os02t0554300-01;Subcellular location=endoplasmic reticulum (GO:0005783)
Chr02	irgsp1_rep	five_prime_UTR	20932586	20932806	.	-	.	Parent=Os02t0554300-01
Chr02	irgsp1_rep	five_prime_UTR	20931589	20931599	.	-	.	Parent=Os02t0554300-01
Chr02	irgsp1_rep	CDS	20931226	20931588	.	-	0	Parent=Os02t0554300-01
Chr02	irgsp1_rep	CDS	20931053	20931144	.	-	0	Parent=Os02t0554300-01
Chr02	irgsp1_rep	CDS	20930741	20930798	.	-	1	Parent=Os02t0554300-01
Chr02	irgsp1_rep	CDS	20927793	20927849	.	-	0	Parent=Os02t0554300-01
Chr02	irgsp1_rep	CDS	20927661	20927694	.	-	0	Parent=Os02t0554300-01
Chr02	irgsp1_rep	CDS	20927440	20927520	.	-	2	Parent=Os02t0554300-01
Chr02	irgsp1_rep	CDS	20927144	20927250	.	-	2	Parent=Os02t0554300-01
Chr02	irgsp1_rep	CDS	20926923	20927009	.	-	0	Parent=Os02t0554300-01
Chr02	irgsp1_rep	CDS	20926673	20926750	.	-	0	Parent=Os02t0554300-01
Chr02	irgsp1_rep	CDS	20926177	20926247	.	-	0	Parent=Os02t0554300-01
Chr02	irgsp1_rep	CDS	20925995	20926093	.	-	1	Parent=Os02t0554300-01
Chr02	irgsp1_rep	CDS	20925170	20925269	.	-	1	Parent=Os02t0554300-01
Chr02	irgsp1_rep	CDS	20924471	20924579	.	-	0	Parent=Os02t0554300-01
Chr02	irgsp1_rep	CDS	20924296	20924368	.	-	2	Parent=Os02t0554300-01
Chr02	irgsp1_rep	CDS	20923632	20923725	.	-	1	Parent=Os02t0554300-01
Chr02	irgsp1_rep	CDS	20923257	20923349	.	-	0	Parent=Os02t0554300-01
Chr02	irgsp1_rep	CDS	20922960	20923026	.	-	0	Parent=Os02t0554300-01
Chr02	irgsp1_rep	CDS	20921837	20921967	.	-	2	Parent=Os02t0554300-01
Chr02	irgsp1_rep	three_prime_UTR	20921441	20921836	.	-	.	Parent=Os02t0554300-01
Chr02	irgsp1_rep	mRNA	20946101	20946640	.	+	.	ID=Os02t0554500-00;Name=Os02t0554500-00;Locus_id=Os02g0554500;Note=Hypothetical conserved gene.;Transcript_evidence=EF517497 (DDBJ);ORF_evidence=NP_001047118.2 (RefSeq);TENOR=Os02t0554500-00;KEGG=Os02t0554500-00
Chr02	irgsp1_rep	CDS	20946101	20946232	.	+	0	Parent=Os02t0554500-00
Chr02	irgsp1_rep	three_prime_UTR	20946233	20946261	.	+	.	Parent=Os02t0554500-00
Chr02	irgsp1_rep	three_prime_UTR	20946358	20946640	.	+	.	Parent=Os02t0554500-00
Chr02	irgsp1_rep	mRNA	20955271	20956117	.	+	.	ID=Os02t0554800-01;Name=Os02t0554800-01;Locus_id=Os02g0554800;Note=Conserved hypothetical protein.;Transcript_evidence=AK242116 (DDBJ%2C Best hit);ORF_evidence=NP_001173019.1 (RefSeq);NIAS_FLcDNA=J075146H05;TENOR=Os02t0554800-01;KEGG=Os02t0554800-01
Chr02	irgsp1_rep	five_prime_UTR	20955271	20955317	.	+	.	Parent=Os02t0554800-01
Chr02	irgsp1_rep	CDS	20955318	20956019	.	+	0	Parent=Os02t0554800-01
Chr02	irgsp1_rep	three_prime_UTR	20956020	20956117	.	+	.	Parent=Os02t0554800-01
Chr02	irgsp1_rep	mRNA	20957208	20961970	.	-	.	ID=Os02t0554900-01;Name=Os02t0554900-01;Locus_id=Os02g0554900;Oryzabase Gene Symbol Synonym(s)=PDIL1%3B3%2C PDIL1-3%2C PDIL 1-3%2C OsPDIL1-3;Oryzabase Gene Name Synonym(s)=PROTEIN DISULFIDE ISOMERASE-LIKE 1%3B3%2C PROTEIN DISULFIDE ISOMERASE-LIKE 1-3%2C PDI-like protein 1-3;Note=Similar to Protein disulfide isomerase (Fragment).;Transcript_evidence=AK072252 (DDBJ%2C Best hit);ORF_evidence=Q69ST6 (UniProt);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Cellular Component: endoplasmic reticulum (GO:0005783),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035),Molecular Function: isomerase activity (GO:0016853);InterPro=Thioredoxin (IPR005746),Protein disulphide isomerase (IPR005792),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766),Thioredoxin%2C conserved site (IPR017937);NIAS_FLcDNA=J023008H21;Oryzabase=11898;TENOR=Os02t0554900-01
Chr02	irgsp1_rep	five_prime_UTR	20961900	20961970	.	-	.	Parent=Os02t0554900-01
Chr02	irgsp1_rep	CDS	20961583	20961899	.	-	0	Parent=Os02t0554900-01
Chr02	irgsp1_rep	CDS	20961145	20961469	.	-	1	Parent=Os02t0554900-01
Chr02	irgsp1_rep	CDS	20960433	20960621	.	-	0	Parent=Os02t0554900-01
Chr02	irgsp1_rep	CDS	20959799	20959924	.	-	0	Parent=Os02t0554900-01
Chr02	irgsp1_rep	CDS	20959442	20959579	.	-	0	Parent=Os02t0554900-01
Chr02	irgsp1_rep	CDS	20959191	20959307	.	-	0	Parent=Os02t0554900-01
Chr02	irgsp1_rep	CDS	20958647	20958764	.	-	0	Parent=Os02t0554900-01
Chr02	irgsp1_rep	CDS	20958105	20958217	.	-	2	Parent=Os02t0554900-01
Chr02	irgsp1_rep	CDS	20957583	20957777	.	-	0	Parent=Os02t0554900-01
Chr02	irgsp1_rep	three_prime_UTR	20957573	20957582	.	-	.	Parent=Os02t0554900-01
Chr02	irgsp1_rep	three_prime_UTR	20957208	20957444	.	-	.	Parent=Os02t0554900-01
Chr02	irgsp1_rep	mRNA	20957207	20961822	.	-	.	ID=Os02t0554900-02;Name=Os02t0554900-02;Locus_id=Os02g0554900;Oryzabase Gene Symbol Synonym(s)=PDIL1%3B3%2C PDIL1-3%2C PDIL 1-3%2C OsPDIL1-3;Oryzabase Gene Name Synonym(s)=PROTEIN DISULFIDE ISOMERASE-LIKE 1%3B3%2C PROTEIN DISULFIDE ISOMERASE-LIKE 1-3%2C PDI-like protein 1-3;Note=Similar to Protein disulfide isomerase-like 1-3.;Transcript_evidence=AK073161 (DDBJ%2C Best hit);ORF_evidence=Q69ST6 (UniProt);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Cellular Component: endoplasmic reticulum (GO:0005783),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035),Molecular Function: isomerase activity (GO:0016853);InterPro=Thioredoxin (IPR005746),Protein disulphide isomerase (IPR005792),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766),Thioredoxin%2C conserved site (IPR017937);NIAS_FLcDNA=J033021G10;Oryzabase=11898;TENOR=Os02t0554900-02
Chr02	irgsp1_rep	five_prime_UTR	20961822	20961822	.	-	.	Parent=Os02t0554900-02
Chr02	irgsp1_rep	CDS	20961583	20961821	.	-	0	Parent=Os02t0554900-02
Chr02	irgsp1_rep	CDS	20961145	20961469	.	-	1	Parent=Os02t0554900-02
Chr02	irgsp1_rep	CDS	20960433	20960621	.	-	0	Parent=Os02t0554900-02
Chr02	irgsp1_rep	CDS	20959799	20959924	.	-	0	Parent=Os02t0554900-02
Chr02	irgsp1_rep	CDS	20959442	20959579	.	-	0	Parent=Os02t0554900-02
Chr02	irgsp1_rep	CDS	20959191	20959307	.	-	0	Parent=Os02t0554900-02
Chr02	irgsp1_rep	CDS	20958647	20958764	.	-	0	Parent=Os02t0554900-02
Chr02	irgsp1_rep	CDS	20958105	20958217	.	-	2	Parent=Os02t0554900-02
Chr02	irgsp1_rep	CDS	20957583	20957777	.	-	0	Parent=Os02t0554900-02
Chr02	irgsp1_rep	three_prime_UTR	20957573	20957582	.	-	.	Parent=Os02t0554900-02
Chr02	irgsp1_rep	three_prime_UTR	20957207	20957444	.	-	.	Parent=Os02t0554900-02
Chr02	irgsp1_rep	mRNA	20963182	20966686	.	-	.	ID=Os02t0555000-01;Name=Os02t0555000-01;Locus_id=Os02g0555000;Note=Protein of unknown function%2C ATP binding family protein.;Transcript_evidence=AK065270 (DDBJ%2C Best hit),AK121253 (DDBJ%2C Best hit);ORF_evidence=B6TVF0 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=Uncharacterised protein family%2C ATP binding (IPR004130);NIAS_FLcDNA=J013002L01,J023101O11;Expression=AK065270;TENOR=Os02t0555000-01;KEGG=Os02t0555000-01
Chr02	irgsp1_rep	five_prime_UTR	20966555	20966686	.	-	.	Parent=Os02t0555000-01
Chr02	irgsp1_rep	CDS	20966463	20966554	.	-	0	Parent=Os02t0555000-01
Chr02	irgsp1_rep	CDS	20966010	20966054	.	-	1	Parent=Os02t0555000-01
Chr02	irgsp1_rep	CDS	20965814	20965893	.	-	1	Parent=Os02t0555000-01
Chr02	irgsp1_rep	CDS	20965651	20965725	.	-	2	Parent=Os02t0555000-01
Chr02	irgsp1_rep	CDS	20965078	20965181	.	-	2	Parent=Os02t0555000-01
Chr02	irgsp1_rep	CDS	20964838	20964994	.	-	0	Parent=Os02t0555000-01
Chr02	irgsp1_rep	CDS	20964678	20964765	.	-	2	Parent=Os02t0555000-01
Chr02	irgsp1_rep	CDS	20964046	20964118	.	-	1	Parent=Os02t0555000-01
Chr02	irgsp1_rep	CDS	20963838	20963969	.	-	0	Parent=Os02t0555000-01
Chr02	irgsp1_rep	CDS	20963337	20963405	.	-	0	Parent=Os02t0555000-01
Chr02	irgsp1_rep	three_prime_UTR	20963182	20963336	.	-	.	Parent=Os02t0555000-01
Chr02	irgsp1_rep	mRNA	20966831	20969331	.	+	.	ID=Os02t0555100-01;Name=Os02t0555100-01;Locus_id=Os02g0555100;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK287675 (DDBJ%2C Best hit);ORF_evidence=B6SXY4 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J065121L06;TENOR=Os02t0555100-01;KEGG=Os02t0555100-01
Chr02	irgsp1_rep	five_prime_UTR	20966831	20966836	.	+	.	Parent=Os02t0555100-01
Chr02	irgsp1_rep	CDS	20966837	20968627	.	+	0	Parent=Os02t0555100-01
Chr02	irgsp1_rep	three_prime_UTR	20968628	20969331	.	+	.	Parent=Os02t0555100-01
Chr02	irgsp1_rep	mRNA	20969986	20977618	.	-	.	ID=Os02t0555200-01;Name=Os02t0555200-01;Locus_id=Os02g0555200;Note=Conserved hypothetical protein.;Transcript_evidence=AK242566 (DDBJ%2C Best hit);ORF_evidence=Q69ST4 (UniProt);NIAS_FLcDNA=J090005F10;TENOR=Os02t0555200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	20977490	20977618	.	-	.	Parent=Os02t0555200-01
Chr02	irgsp1_rep	five_prime_UTR	20975358	20975470	.	-	.	Parent=Os02t0555200-01
Chr02	irgsp1_rep	five_prime_UTR	20975104	20975209	.	-	.	Parent=Os02t0555200-01
Chr02	irgsp1_rep	five_prime_UTR	20972866	20973015	.	-	.	Parent=Os02t0555200-01
Chr02	irgsp1_rep	five_prime_UTR	20972107	20972145	.	-	.	Parent=Os02t0555200-01
Chr02	irgsp1_rep	five_prime_UTR	20971655	20972002	.	-	.	Parent=Os02t0555200-01
Chr02	irgsp1_rep	five_prime_UTR	20970870	20971459	.	-	.	Parent=Os02t0555200-01
Chr02	irgsp1_rep	five_prime_UTR	20970732	20970741	.	-	.	Parent=Os02t0555200-01
Chr02	irgsp1_rep	CDS	20970513	20970731	.	-	0	Parent=Os02t0555200-01
Chr02	irgsp1_rep	three_prime_UTR	20969986	20970512	.	-	.	Parent=Os02t0555200-01
Chr02	irgsp1_rep	mRNA	20972825	20973948	.	+	.	ID=Os02t0555300-01;Name=Os02t0555300-01;Locus_id=Os02g0555300;CGSNL Gene Symbol=NAC28;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 28;Oryzabase Gene Symbol Synonym(s)=ONAC028%2C ONAC28;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 028%2C NAC domain-containing protein 28;Note=No apical meristem (NAM) protein domain containing protein.;Transcript_evidence=AK108454 (DDBJ%2C Best hit);ORF_evidence=NP_001150879.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=002-143-C12;Oryzabase=11474;Expression=AK108454;TENOR=Os02t0555300-01;KEGG=Os02t0555300-01
Chr02	irgsp1_rep	five_prime_UTR	20972825	20972843	.	+	.	Parent=Os02t0555300-01
Chr02	irgsp1_rep	CDS	20972844	20973003	.	+	0	Parent=Os02t0555300-01
Chr02	irgsp1_rep	CDS	20973094	20973398	.	+	2	Parent=Os02t0555300-01
Chr02	irgsp1_rep	CDS	20973516	20973665	.	+	0	Parent=Os02t0555300-01
Chr02	irgsp1_rep	three_prime_UTR	20973666	20973948	.	+	.	Parent=Os02t0555300-01
Chr02	irgsp1_rep	mRNA	20985975	20994152	.	+	.	ID=Os02t0555600-01;Name=Os02t0555600-01;Locus_id=Os02g0555600;Note=Amino acid-binding ACT domain containing protein.;Transcript_evidence=AK072247 (DDBJ%2C Best hit);ORF_evidence=NP_001117608.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: amino acid binding (GO:0016597);InterPro=Amino acid-binding ACT (IPR002912);NIAS_FLcDNA=J023002N03;Expression=AK072247;TENOR=Os02t0555600-01;KEGG=Os02t0555600-01
Chr02	irgsp1_rep	five_prime_UTR	20985975	20986354	.	+	.	Parent=Os02t0555600-01
Chr02	irgsp1_rep	five_prime_UTR	20990482	20990582	.	+	.	Parent=Os02t0555600-01
Chr02	irgsp1_rep	five_prime_UTR	20990797	20990822	.	+	.	Parent=Os02t0555600-01
Chr02	irgsp1_rep	CDS	20990823	20990881	.	+	0	Parent=Os02t0555600-01
Chr02	irgsp1_rep	CDS	20991004	20991049	.	+	1	Parent=Os02t0555600-01
Chr02	irgsp1_rep	CDS	20991173	20991287	.	+	0	Parent=Os02t0555600-01
Chr02	irgsp1_rep	CDS	20991396	20991463	.	+	2	Parent=Os02t0555600-01
Chr02	irgsp1_rep	CDS	20991897	20992580	.	+	0	Parent=Os02t0555600-01
Chr02	irgsp1_rep	CDS	20992786	20992887	.	+	0	Parent=Os02t0555600-01
Chr02	irgsp1_rep	CDS	20993495	20993866	.	+	0	Parent=Os02t0555600-01
Chr02	irgsp1_rep	three_prime_UTR	20993867	20994152	.	+	.	Parent=Os02t0555600-01
Chr02	irgsp1_rep	mRNA	20989673	20994224	.	+	.	ID=Os02t0555600-02;Name=Os02t0555600-02;Locus_id=Os02g0555600;Note=Amino acid-binding ACT domain containing protein.;Transcript_evidence=AK100703 (DDBJ%2C Best hit);ORF_evidence=NP_001117608.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: amino acid binding (GO:0016597);InterPro=Amino acid-binding ACT (IPR002912);NIAS_FLcDNA=J023114O09;Expression=AK100703;TENOR=Os02t0555600-02;KEGG=Os02t0555600-02
Chr02	irgsp1_rep	five_prime_UTR	20989673	20990150	.	+	.	Parent=Os02t0555600-02
Chr02	irgsp1_rep	five_prime_UTR	20990482	20990582	.	+	.	Parent=Os02t0555600-02
Chr02	irgsp1_rep	five_prime_UTR	20990797	20990822	.	+	.	Parent=Os02t0555600-02
Chr02	irgsp1_rep	CDS	20990823	20990881	.	+	0	Parent=Os02t0555600-02
Chr02	irgsp1_rep	CDS	20991004	20991049	.	+	1	Parent=Os02t0555600-02
Chr02	irgsp1_rep	CDS	20991173	20991287	.	+	0	Parent=Os02t0555600-02
Chr02	irgsp1_rep	CDS	20991396	20991463	.	+	2	Parent=Os02t0555600-02
Chr02	irgsp1_rep	CDS	20991897	20992580	.	+	0	Parent=Os02t0555600-02
Chr02	irgsp1_rep	CDS	20992786	20992887	.	+	0	Parent=Os02t0555600-02
Chr02	irgsp1_rep	CDS	20993495	20993866	.	+	0	Parent=Os02t0555600-02
Chr02	irgsp1_rep	three_prime_UTR	20993867	20994224	.	+	.	Parent=Os02t0555600-02
Chr02	irgsp1_rep	mRNA	20991185	20993676	.	-	.	ID=Os02t0555650-00;Name=Os02t0555650-00;Locus_id=Os02g0555650;Note=Hypothetical protein.;Transcript_evidence=tplb0061b06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0555650-00
Chr02	irgsp1_rep	five_prime_UTR	20993503	20993676	.	-	.	Parent=Os02t0555650-00
Chr02	irgsp1_rep	five_prime_UTR	20992831	20992895	.	-	.	Parent=Os02t0555650-00
Chr02	irgsp1_rep	five_prime_UTR	20992373	20992634	.	-	.	Parent=Os02t0555650-00
Chr02	irgsp1_rep	CDS	20992326	20992372	.	-	0	Parent=Os02t0555650-00
Chr02	irgsp1_rep	CDS	20992000	20992261	.	-	1	Parent=Os02t0555650-00
Chr02	irgsp1_rep	three_prime_UTR	20991856	20991999	.	-	.	Parent=Os02t0555650-00
Chr02	irgsp1_rep	three_prime_UTR	20991185	20991297	.	-	.	Parent=Os02t0555650-00
Chr02	irgsp1_rep	mRNA	20994405	20997117	.	-	.	ID=Os02t0555700-01;Name=Os02t0555700-01;Locus_id=Os02g0555700;Oryzabase Gene Symbol Synonym(s)=OsDjC19;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C19;Note=Similar to Chaperone protein dnaJ 10 (AtJ10) (AtDjC10).;Transcript_evidence=AK108057 (DDBJ%2C Best hit);ORF_evidence=NP_177828.2 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=002-138-A01;Oryzabase=12176;Expression=AK108057;TENOR=Os02t0555700-01;KEGG=Os02t0555700-01
Chr02	irgsp1_rep	five_prime_UTR	20996824	20997117	.	-	.	Parent=Os02t0555700-01
Chr02	irgsp1_rep	CDS	20996737	20996823	.	-	0	Parent=Os02t0555700-01
Chr02	irgsp1_rep	CDS	20996587	20996646	.	-	0	Parent=Os02t0555700-01
Chr02	irgsp1_rep	CDS	20996391	20996473	.	-	0	Parent=Os02t0555700-01
Chr02	irgsp1_rep	CDS	20996126	20996279	.	-	1	Parent=Os02t0555700-01
Chr02	irgsp1_rep	CDS	20995854	20995983	.	-	0	Parent=Os02t0555700-01
Chr02	irgsp1_rep	CDS	20995605	20995763	.	-	2	Parent=Os02t0555700-01
Chr02	irgsp1_rep	CDS	20995345	20995523	.	-	2	Parent=Os02t0555700-01
Chr02	irgsp1_rep	CDS	20995098	20995178	.	-	0	Parent=Os02t0555700-01
Chr02	irgsp1_rep	CDS	20994866	20994992	.	-	0	Parent=Os02t0555700-01
Chr02	irgsp1_rep	CDS	20994699	20994772	.	-	2	Parent=Os02t0555700-01
Chr02	irgsp1_rep	three_prime_UTR	20994405	20994698	.	-	.	Parent=Os02t0555700-01
Chr02	irgsp1_rep	mRNA	21001727	21001799	.	+	.	ID=Os02t0555766-00;Name=Os02t0555766-00;Locus_id=Os02g0555766;Note=Non-protein coding transcript.;Transcript_evidence=X02683 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0555766-00
Chr02	irgsp1_rep	exon	21001727	21001799	.	+	.	Parent=Os02t0555766-00
Chr02	irgsp1_rep	mRNA	21002133	21008409	.	+	.	ID=Os02t0555832-01;Name=Os02t0555832-01;Locus_id=Os02g0555832;Note=Hypothetical gene.;Transcript_evidence=AK287889 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J065208N11;TENOR=Os02t0555832-01;KEGG=Os02t0555832-01
Chr02	irgsp1_rep	five_prime_UTR	21002133	21002750	.	+	.	Parent=Os02t0555832-01
Chr02	irgsp1_rep	five_prime_UTR	21002833	21002951	.	+	.	Parent=Os02t0555832-01
Chr02	irgsp1_rep	five_prime_UTR	21003287	21003526	.	+	.	Parent=Os02t0555832-01
Chr02	irgsp1_rep	five_prime_UTR	21003670	21003777	.	+	.	Parent=Os02t0555832-01
Chr02	irgsp1_rep	five_prime_UTR	21003878	21003937	.	+	.	Parent=Os02t0555832-01
Chr02	irgsp1_rep	five_prime_UTR	21004597	21004672	.	+	.	Parent=Os02t0555832-01
Chr02	irgsp1_rep	five_prime_UTR	21004761	21004921	.	+	.	Parent=Os02t0555832-01
Chr02	irgsp1_rep	five_prime_UTR	21005328	21005390	.	+	.	Parent=Os02t0555832-01
Chr02	irgsp1_rep	five_prime_UTR	21005531	21005618	.	+	.	Parent=Os02t0555832-01
Chr02	irgsp1_rep	five_prime_UTR	21006121	21006621	.	+	.	Parent=Os02t0555832-01
Chr02	irgsp1_rep	five_prime_UTR	21007812	21007826	.	+	.	Parent=Os02t0555832-01
Chr02	irgsp1_rep	CDS	21007827	21008336	.	+	0	Parent=Os02t0555832-01
Chr02	irgsp1_rep	three_prime_UTR	21008337	21008409	.	+	.	Parent=Os02t0555832-01
Chr02	irgsp1_rep	mRNA	21002439	21008209	.	-	.	ID=Os02t0555900-00;Name=Os02t0555900-00;Locus_id=Os02g0555900;Note=Similar to H0315A08.7 protein.;Transcript_evidence=FP092359 (DDBJ);ORF_evidence=Q01I65 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os02t0555900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	21007812	21008209	.	-	0	Parent=Os02t0555900-00
Chr02	irgsp1_rep	CDS	21006121	21006621	.	-	1	Parent=Os02t0555900-00
Chr02	irgsp1_rep	CDS	21005531	21005618	.	-	1	Parent=Os02t0555900-00
Chr02	irgsp1_rep	CDS	21005328	21005390	.	-	0	Parent=Os02t0555900-00
Chr02	irgsp1_rep	CDS	21004761	21004921	.	-	0	Parent=Os02t0555900-00
Chr02	irgsp1_rep	CDS	21004597	21004672	.	-	1	Parent=Os02t0555900-00
Chr02	irgsp1_rep	CDS	21003878	21003937	.	-	0	Parent=Os02t0555900-00
Chr02	irgsp1_rep	CDS	21003670	21003777	.	-	0	Parent=Os02t0555900-00
Chr02	irgsp1_rep	CDS	21003250	21003526	.	-	0	Parent=Os02t0555900-00
Chr02	irgsp1_rep	CDS	21002439	21002860	.	-	2	Parent=Os02t0555900-00
Chr02	irgsp1_rep	mRNA	21014558	21019302	.	-	.	ID=Os02t0556000-00;Name=Os02t0556000-00;Locus_id=Os02g0556000;CGSNL Gene Symbol=PGSIP-A3;CGSNL Gene Name=PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN A3;Oryzabase Gene Symbol Synonym(s)=OsPGSIP-A3;Oryzabase Gene Name Synonym(s)=plant glycogenin-like starch initiation protein A3;Note=Similar to cDNA clone:J013112C08%2C full insert sequence.;Transcript_evidence=CT835413 (DDBJ%2C Best hit);ORF_evidence=B7EDL1 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 8 (IPR002495);Oryzabase=23273;TENOR=Os02t0556000-00;KEGG=Os02t0556000-00
Chr02	irgsp1_rep	five_prime_UTR	21018968	21019302	.	-	.	Parent=Os02t0556000-00
Chr02	irgsp1_rep	CDS	21018909	21018967	.	-	0	Parent=Os02t0556000-00
Chr02	irgsp1_rep	CDS	21017090	21017287	.	-	1	Parent=Os02t0556000-00
Chr02	irgsp1_rep	CDS	21014789	21016526	.	-	1	Parent=Os02t0556000-00
Chr02	irgsp1_rep	three_prime_UTR	21014685	21014788	.	-	.	Parent=Os02t0556000-00
Chr02	irgsp1_rep	three_prime_UTR	21014558	21014660	.	-	.	Parent=Os02t0556000-00
Chr02	irgsp1_rep	mRNA	21014909	21016181	.	+	.	ID=Os02t0556050-00;Name=Os02t0556050-00;Locus_id=Os02g0556050;Note=Hypothetical protein.;Transcript_evidence=tplb0041a22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0556050-00
Chr02	irgsp1_rep	CDS	21014909	21015760	.	+	0	Parent=Os02t0556050-00
Chr02	irgsp1_rep	three_prime_UTR	21015761	21015802	.	+	.	Parent=Os02t0556050-00
Chr02	irgsp1_rep	three_prime_UTR	21015860	21016181	.	+	.	Parent=Os02t0556050-00
Chr02	irgsp1_rep	mRNA	21027755	21038792	.	+	.	ID=Os02t0556100-01;Name=Os02t0556100-01;Locus_id=Os02g0556100;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK103125 (DDBJ%2C Best hit),AK059938 (DDBJ%2C Best hit);ORF_evidence=B6TVJ7 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033119M03,006-210-E01;TENOR=Os02t0556100-01
Chr02	irgsp1_rep	five_prime_UTR	21027755	21027845	.	+	.	Parent=Os02t0556100-01
Chr02	irgsp1_rep	CDS	21027846	21027910	.	+	0	Parent=Os02t0556100-01
Chr02	irgsp1_rep	CDS	21028183	21028312	.	+	1	Parent=Os02t0556100-01
Chr02	irgsp1_rep	CDS	21029389	21029477	.	+	0	Parent=Os02t0556100-01
Chr02	irgsp1_rep	CDS	21030198	21030253	.	+	1	Parent=Os02t0556100-01
Chr02	irgsp1_rep	CDS	21030327	21030382	.	+	2	Parent=Os02t0556100-01
Chr02	irgsp1_rep	CDS	21031321	21031414	.	+	0	Parent=Os02t0556100-01
Chr02	irgsp1_rep	CDS	21032007	21032086	.	+	2	Parent=Os02t0556100-01
Chr02	irgsp1_rep	CDS	21032204	21032246	.	+	0	Parent=Os02t0556100-01
Chr02	irgsp1_rep	CDS	21038145	21038236	.	+	2	Parent=Os02t0556100-01
Chr02	irgsp1_rep	CDS	21038352	21038525	.	+	0	Parent=Os02t0556100-01
Chr02	irgsp1_rep	three_prime_UTR	21038526	21038792	.	+	.	Parent=Os02t0556100-01
Chr02	irgsp1_rep	mRNA	21039828	21040638	.	+	.	ID=Os02t0556300-01;Name=Os02t0556300-01;Locus_id=Os02g0556300;Note=Hypothetical protein.;Transcript_evidence=AK064711 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-118-C06;Expression=AK064711;TENOR=Os02t0556300-01;KEGG=Os02t0556300-01
Chr02	irgsp1_rep	five_prime_UTR	21039828	21040062	.	+	.	Parent=Os02t0556300-01
Chr02	irgsp1_rep	CDS	21040063	21040518	.	+	0	Parent=Os02t0556300-01
Chr02	irgsp1_rep	three_prime_UTR	21040519	21040638	.	+	.	Parent=Os02t0556300-01
Chr02	irgsp1_rep	mRNA	21039695	21042737	.	-	.	ID=Os02t0556400-01;Name=Os02t0556400-01;Locus_id=Os02g0556400;Note=tRNA guanosine-2'-O-methyltransferase%2C TRM11 domain containing protein.;Transcript_evidence=AK241363 (DDBJ%2C Best hit);ORF_evidence=NP_566792.1 (RefSeq);GO=Biological Process: methylation (GO:0032259),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Putative RNA methylase (IPR000241),DNA methylase%2C N-6 adenine-specific%2C conserved site (IPR002052),tRNA guanosine-2&apos%3B-O-methyltransferase%2C TRM11 (IPR016691);NIAS_FLcDNA=J065152D03;TENOR=Os02t0556400-01;KEGG=Os02t0556400-01
Chr02	irgsp1_rep	five_prime_UTR	21042637	21042737	.	-	.	Parent=Os02t0556400-01
Chr02	irgsp1_rep	CDS	21042435	21042636	.	-	0	Parent=Os02t0556400-01
Chr02	irgsp1_rep	CDS	21042117	21042328	.	-	2	Parent=Os02t0556400-01
Chr02	irgsp1_rep	CDS	21041472	21041789	.	-	0	Parent=Os02t0556400-01
Chr02	irgsp1_rep	CDS	21041321	21041395	.	-	0	Parent=Os02t0556400-01
Chr02	irgsp1_rep	CDS	21040994	21041068	.	-	0	Parent=Os02t0556400-01
Chr02	irgsp1_rep	CDS	21039934	21040494	.	-	0	Parent=Os02t0556400-01
Chr02	irgsp1_rep	three_prime_UTR	21039695	21039933	.	-	.	Parent=Os02t0556400-01
Chr02	irgsp1_rep	mRNA	21043834	21050336	.	-	.	ID=Os02t0556600-01;Name=Os02t0556600-01;Locus_id=Os02g0556600;Note=Similar to Pherophorin-dz1 protein precursor.;Transcript_evidence=AK066206 (DDBJ%2C Best hit);ORF_evidence=B6UAR9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=B30.2/SPRY domain (IPR001870),SPla/RYanodine receptor SPRY (IPR003877),CTLH%2C C-terminal LisH motif (IPR006595),Concanavalin A-like lectin/glucanase (IPR008985),Ran binding protein-like%2C CRA domain (IPR013144),SPla/RYanodine receptor subgroup (IPR018355),Ran binding protein%2C CRA domain (IPR019589);NIAS_FLcDNA=J013056D20;Expression=AK066206;TENOR=Os02t0556600-01;KEGG=Os02t0556600-01
Chr02	irgsp1_rep	five_prime_UTR	21050186	21050336	.	-	.	Parent=Os02t0556600-01
Chr02	irgsp1_rep	five_prime_UTR	21050046	21050066	.	-	.	Parent=Os02t0556600-01
Chr02	irgsp1_rep	CDS	21049648	21050045	.	-	0	Parent=Os02t0556600-01
Chr02	irgsp1_rep	CDS	21048259	21048405	.	-	1	Parent=Os02t0556600-01
Chr02	irgsp1_rep	CDS	21047773	21047859	.	-	1	Parent=Os02t0556600-01
Chr02	irgsp1_rep	CDS	21047240	21047285	.	-	1	Parent=Os02t0556600-01
Chr02	irgsp1_rep	CDS	21046733	21046809	.	-	0	Parent=Os02t0556600-01
Chr02	irgsp1_rep	CDS	21046290	21046443	.	-	1	Parent=Os02t0556600-01
Chr02	irgsp1_rep	CDS	21045590	21045658	.	-	0	Parent=Os02t0556600-01
Chr02	irgsp1_rep	CDS	21045195	21045254	.	-	0	Parent=Os02t0556600-01
Chr02	irgsp1_rep	CDS	21044658	21044744	.	-	0	Parent=Os02t0556600-01
Chr02	irgsp1_rep	CDS	21044233	21044517	.	-	0	Parent=Os02t0556600-01
Chr02	irgsp1_rep	three_prime_UTR	21043834	21044232	.	-	.	Parent=Os02t0556600-01
Chr02	irgsp1_rep	mRNA	21054451	21060132	.	+	.	ID=Os02t0556700-01;Name=Os02t0556700-01;Locus_id=Os02g0556700;Note=T-complex 11 family protein.;Transcript_evidence=AK073875 (DDBJ%2C Best hit);ORF_evidence=Q01K80 (UniProt);InterPro=T-complex 11 (IPR008862);NIAS_FLcDNA=J033074B12;Expression=AK073875;TENOR=Os02t0556700-01;KEGG=Os02t0556700-01
Chr02	irgsp1_rep	five_prime_UTR	21054451	21054572	.	+	.	Parent=Os02t0556700-01
Chr02	irgsp1_rep	CDS	21054573	21054785	.	+	0	Parent=Os02t0556700-01
Chr02	irgsp1_rep	CDS	21055317	21055438	.	+	0	Parent=Os02t0556700-01
Chr02	irgsp1_rep	CDS	21055532	21055976	.	+	1	Parent=Os02t0556700-01
Chr02	irgsp1_rep	CDS	21056059	21056165	.	+	0	Parent=Os02t0556700-01
Chr02	irgsp1_rep	CDS	21056262	21057069	.	+	1	Parent=Os02t0556700-01
Chr02	irgsp1_rep	CDS	21057297	21057734	.	+	0	Parent=Os02t0556700-01
Chr02	irgsp1_rep	CDS	21057955	21058143	.	+	0	Parent=Os02t0556700-01
Chr02	irgsp1_rep	CDS	21058222	21058449	.	+	0	Parent=Os02t0556700-01
Chr02	irgsp1_rep	CDS	21058549	21058746	.	+	0	Parent=Os02t0556700-01
Chr02	irgsp1_rep	CDS	21058910	21058985	.	+	0	Parent=Os02t0556700-01
Chr02	irgsp1_rep	CDS	21059058	21059244	.	+	2	Parent=Os02t0556700-01
Chr02	irgsp1_rep	CDS	21059355	21059844	.	+	1	Parent=Os02t0556700-01
Chr02	irgsp1_rep	three_prime_UTR	21059845	21060132	.	+	.	Parent=Os02t0556700-01
Chr02	irgsp1_rep	mRNA	21056620	21060132	.	+	.	ID=Os02t0556700-02;Name=Os02t0556700-02;Locus_id=Os02g0556700;Note=Similar to H0525C06.4 protein.;Transcript_evidence=AK066869 (DDBJ%2C Best hit);ORF_evidence=Q01K80 (UniProt);InterPro=T-complex 11 (IPR008862);NIAS_FLcDNA=J013083I21;Expression=AK066869;TENOR=Os02t0556700-02;KEGG=Os02t0556700-02
Chr02	irgsp1_rep	CDS	21056620	21057069	.	+	0	Parent=Os02t0556700-02
Chr02	irgsp1_rep	CDS	21057297	21057734	.	+	0	Parent=Os02t0556700-02
Chr02	irgsp1_rep	CDS	21057955	21058143	.	+	0	Parent=Os02t0556700-02
Chr02	irgsp1_rep	CDS	21058222	21058449	.	+	0	Parent=Os02t0556700-02
Chr02	irgsp1_rep	CDS	21058549	21058782	.	+	0	Parent=Os02t0556700-02
Chr02	irgsp1_rep	CDS	21058910	21058985	.	+	0	Parent=Os02t0556700-02
Chr02	irgsp1_rep	CDS	21059058	21059244	.	+	2	Parent=Os02t0556700-02
Chr02	irgsp1_rep	CDS	21059355	21059844	.	+	1	Parent=Os02t0556700-02
Chr02	irgsp1_rep	three_prime_UTR	21059845	21060132	.	+	.	Parent=Os02t0556700-02
Chr02	irgsp1_rep	mRNA	21058536	21059138	.	-	.	ID=Os02t0556750-01;Name=Os02t0556750-01;Locus_id=Os02g0556750;Note=Non-protein coding transcript.;Transcript_evidence=AK062454 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-103-C08;TENOR=Os02t0556750-01
Chr02	irgsp1_rep	exon	21058536	21059138	.	-	.	Parent=Os02t0556750-01
Chr02	irgsp1_rep	mRNA	21060083	21061555	.	-	.	ID=Os02t0556800-01;Name=Os02t0556800-01;Locus_id=Os02g0556800;Note=Similar to proline-rich family protein.;Transcript_evidence=AK100187 (DDBJ%2C Best hit),AK060580 (DDBJ%2C Best hit);ORF_evidence=NP_568178.1 (RefSeq);NIAS_FLcDNA=J023033O22,001-023-G04;TENOR=Os02t0556800-01
Chr02	irgsp1_rep	five_prime_UTR	21061421	21061555	.	-	.	Parent=Os02t0556800-01
Chr02	irgsp1_rep	CDS	21061037	21061420	.	-	0	Parent=Os02t0556800-01
Chr02	irgsp1_rep	CDS	21060280	21060621	.	-	0	Parent=Os02t0556800-01
Chr02	irgsp1_rep	three_prime_UTR	21060083	21060279	.	-	.	Parent=Os02t0556800-01
Chr02	irgsp1_rep	mRNA	21065621	21069016	.	-	.	ID=Os02t0556900-01;Name=Os02t0556900-01;Locus_id=Os02g0556900;Note=Similar to H0525C06.6 protein.;Transcript_evidence=AK063555 (DDBJ%2C Best hit);ORF_evidence=Q01K78 (UniProt);InterPro=DDT domain (IPR004022),WSTF/Acf1/Cbp146 (IPR013136),DDT domain%2C subgroup (IPR018500),DDT domain superfamily (IPR018501);NIAS_FLcDNA=001-117-E08;TENOR=Os02t0556900-01
Chr02	irgsp1_rep	five_prime_UTR	21068828	21069016	.	-	.	Parent=Os02t0556900-01
Chr02	irgsp1_rep	five_prime_UTR	21068102	21068118	.	-	.	Parent=Os02t0556900-01
Chr02	irgsp1_rep	CDS	21067989	21068101	.	-	0	Parent=Os02t0556900-01
Chr02	irgsp1_rep	CDS	21067690	21067862	.	-	1	Parent=Os02t0556900-01
Chr02	irgsp1_rep	CDS	21066639	21066997	.	-	2	Parent=Os02t0556900-01
Chr02	irgsp1_rep	CDS	21066475	21066556	.	-	0	Parent=Os02t0556900-01
Chr02	irgsp1_rep	CDS	21066026	21066366	.	-	2	Parent=Os02t0556900-01
Chr02	irgsp1_rep	CDS	21065621	21065943	.	-	0	Parent=Os02t0556900-01
Chr02	irgsp1_rep	mRNA	21064137	21068994	.	-	.	ID=Os02t0556900-02;Name=Os02t0556900-02;Locus_id=Os02g0556900;Note=DDT domain containing protein.;Transcript_evidence=AK067393 (DDBJ%2C Best hit);ORF_evidence=Q01K78 (UniProt);InterPro=DDT domain (IPR004022),WSTF/Acf1/Cbp146 (IPR013136),DDT domain superfamily (IPR018501);NIAS_FLcDNA=J013106B07;Expression=AK067393;TENOR=Os02t0556900-02;KEGG=Os02t0556900-02
Chr02	irgsp1_rep	five_prime_UTR	21068828	21068994	.	-	.	Parent=Os02t0556900-02
Chr02	irgsp1_rep	five_prime_UTR	21068102	21068118	.	-	.	Parent=Os02t0556900-02
Chr02	irgsp1_rep	CDS	21067989	21068101	.	-	0	Parent=Os02t0556900-02
Chr02	irgsp1_rep	CDS	21067690	21067862	.	-	1	Parent=Os02t0556900-02
Chr02	irgsp1_rep	CDS	21066639	21066997	.	-	2	Parent=Os02t0556900-02
Chr02	irgsp1_rep	CDS	21066475	21066556	.	-	0	Parent=Os02t0556900-02
Chr02	irgsp1_rep	CDS	21066026	21066366	.	-	2	Parent=Os02t0556900-02
Chr02	irgsp1_rep	CDS	21065560	21065943	.	-	0	Parent=Os02t0556900-02
Chr02	irgsp1_rep	CDS	21065268	21065429	.	-	0	Parent=Os02t0556900-02
Chr02	irgsp1_rep	CDS	21065095	21065183	.	-	0	Parent=Os02t0556900-02
Chr02	irgsp1_rep	CDS	21064523	21064673	.	-	1	Parent=Os02t0556900-02
Chr02	irgsp1_rep	three_prime_UTR	21064137	21064522	.	-	.	Parent=Os02t0556900-02
Chr02	irgsp1_rep	mRNA	21073970	21075184	.	+	.	ID=Os02t0557000-01;Name=Os02t0557000-01;Locus_id=Os02g0557000;Note=CARP motif domain containing protein.;Transcript_evidence=AK063478 (DDBJ%2C Best hit);ORF_evidence=A3A808 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=CARP motif (IPR006599),Tubulin binding cofactor C (IPR012945),C-CAP/cofactor C-like domain (IPR017901);NIAS_FLcDNA=001-116-B05;TENOR=Os02t0557000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	21073970	21073970	.	+	.	Parent=Os02t0557000-01
Chr02	irgsp1_rep	CDS	21073971	21075029	.	+	0	Parent=Os02t0557000-01
Chr02	irgsp1_rep	three_prime_UTR	21075030	21075184	.	+	.	Parent=Os02t0557000-01
Chr02	irgsp1_rep	mRNA	21082668	21088255	.	+	.	ID=Os02t0557100-01;Name=Os02t0557100-01;Locus_id=Os02g0557100;Note=AIG1 domain containing protein.;Transcript_evidence=AK068385 (DDBJ%2C Best hit);ORF_evidence=NP_001148533.1 (RefSeq);GO=Molecular Function: GTP binding (GO:0005525);InterPro=AIG1 (IPR006703);NIAS_FLcDNA=J013146D08;Expression=AK068385;TENOR=Os02t0557100-01;KEGG=Os02t0557100-01
Chr02	irgsp1_rep	five_prime_UTR	21082668	21082785	.	+	.	Parent=Os02t0557100-01
Chr02	irgsp1_rep	five_prime_UTR	21084112	21084129	.	+	.	Parent=Os02t0557100-01
Chr02	irgsp1_rep	CDS	21084130	21084352	.	+	0	Parent=Os02t0557100-01
Chr02	irgsp1_rep	CDS	21085999	21086267	.	+	2	Parent=Os02t0557100-01
Chr02	irgsp1_rep	CDS	21086451	21086615	.	+	0	Parent=Os02t0557100-01
Chr02	irgsp1_rep	CDS	21086687	21086809	.	+	0	Parent=Os02t0557100-01
Chr02	irgsp1_rep	CDS	21087867	21088079	.	+	0	Parent=Os02t0557100-01
Chr02	irgsp1_rep	three_prime_UTR	21088080	21088255	.	+	.	Parent=Os02t0557100-01
Chr02	irgsp1_rep	mRNA	21084125	21088051	.	-	.	ID=Os02t0557150-00;Name=Os02t0557150-00;Locus_id=Os02g0557150;Note=Non-protein coding transcript.;Transcript_evidence=BT017369 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0557150-00
Chr02	irgsp1_rep	exon	21087852	21088051	.	-	.	Parent=Os02t0557150-00
Chr02	irgsp1_rep	exon	21086694	21086788	.	-	.	Parent=Os02t0557150-00
Chr02	irgsp1_rep	exon	21086449	21086624	.	-	.	Parent=Os02t0557150-00
Chr02	irgsp1_rep	exon	21085997	21086261	.	-	.	Parent=Os02t0557150-00
Chr02	irgsp1_rep	exon	21084125	21084350	.	-	.	Parent=Os02t0557150-00
Chr02	irgsp1_rep	mRNA	21098190	21103974	.	+	.	ID=Os02t0557200-01;Name=Os02t0557200-01;Locus_id=Os02g0557200;CGSNL Gene Symbol=ARF7;CGSNL Gene Name=AUXIN RESPONSE FACTOR 7;Oryzabase Gene Symbol Synonym(s)=OsARF7;Oryzabase Gene Name Synonym(s)=auxin response factor-7%2C auxin response factor 7;Note=Similar to Auxin response factor 1.;Transcript_evidence=AK070026 (DDBJ%2C Best hit);ORF_evidence=Q6YVY0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: response to hormone stimulus (GO:0009725),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Transcriptional factor B3 (IPR003340),Auxin response factor (IPR010525),Aux/IAA-ARF-dimerisation (IPR011525),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=J023036G16;Oryzabase=10006;Expression=AK070026;TENOR=Os02t0557200-01;KEGG=Os02t0557200-01
Chr02	irgsp1_rep	five_prime_UTR	21098190	21098492	.	+	.	Parent=Os02t0557200-01
Chr02	irgsp1_rep	CDS	21098493	21098541	.	+	0	Parent=Os02t0557200-01
Chr02	irgsp1_rep	CDS	21099316	21099431	.	+	2	Parent=Os02t0557200-01
Chr02	irgsp1_rep	CDS	21099655	21099750	.	+	0	Parent=Os02t0557200-01
Chr02	irgsp1_rep	CDS	21099882	21099938	.	+	0	Parent=Os02t0557200-01
Chr02	irgsp1_rep	CDS	21100153	21100305	.	+	0	Parent=Os02t0557200-01
Chr02	irgsp1_rep	CDS	21100407	21100491	.	+	0	Parent=Os02t0557200-01
Chr02	irgsp1_rep	CDS	21100655	21100745	.	+	2	Parent=Os02t0557200-01
Chr02	irgsp1_rep	CDS	21100884	21101048	.	+	1	Parent=Os02t0557200-01
Chr02	irgsp1_rep	CDS	21101401	21101520	.	+	1	Parent=Os02t0557200-01
Chr02	irgsp1_rep	CDS	21101612	21101687	.	+	1	Parent=Os02t0557200-01
Chr02	irgsp1_rep	CDS	21101853	21102024	.	+	0	Parent=Os02t0557200-01
Chr02	irgsp1_rep	CDS	21102180	21102655	.	+	2	Parent=Os02t0557200-01
Chr02	irgsp1_rep	CDS	21102736	21102926	.	+	0	Parent=Os02t0557200-01
Chr02	irgsp1_rep	CDS	21103017	21103206	.	+	1	Parent=Os02t0557200-01
Chr02	irgsp1_rep	three_prime_UTR	21103207	21103974	.	+	.	Parent=Os02t0557200-01
Chr02	irgsp1_rep	mRNA	21102291	21103546	.	-	.	ID=Os02t0557250-00;Name=Os02t0557250-00;Locus_id=Os02g0557250;Note=Non-protein coding transcript.;Transcript_evidence=BT017140 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0557250-00
Chr02	irgsp1_rep	exon	21103012	21103546	.	-	.	Parent=Os02t0557250-00
Chr02	irgsp1_rep	exon	21102739	21102919	.	-	.	Parent=Os02t0557250-00
Chr02	irgsp1_rep	exon	21102291	21102658	.	-	.	Parent=Os02t0557250-00
Chr02	irgsp1_rep	mRNA	21104701	21108054	.	-	.	ID=Os02t0557300-01;Name=Os02t0557300-01;Locus_id=Os02g0557300;Note=Similar to RING-H2 finger protein ATL1G.;Transcript_evidence=AK067053 (DDBJ%2C Best hit);ORF_evidence=NP_174614.2 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J013093J16;Expression=AK067053;TENOR=Os02t0557300-01;KEGG=Os02t0557300-01
Chr02	irgsp1_rep	five_prime_UTR	21107087	21108054	.	-	.	Parent=Os02t0557300-01
Chr02	irgsp1_rep	CDS	21106877	21107086	.	-	0	Parent=Os02t0557300-01
Chr02	irgsp1_rep	CDS	21106688	21106770	.	-	0	Parent=Os02t0557300-01
Chr02	irgsp1_rep	CDS	21104850	21105258	.	-	1	Parent=Os02t0557300-01
Chr02	irgsp1_rep	three_prime_UTR	21104701	21104849	.	-	.	Parent=Os02t0557300-01
Chr02	irgsp1_rep	mRNA	21113982	21115838	.	+	.	ID=Os02t0557500-01;Name=Os02t0557500-01;Locus_id=Os02g0557500;CGSNL Gene Symbol=C3H16;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 16;Oryzabase Gene Symbol Synonym(s)=OsC3H16;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 16;Note=Zinc finger%2C CCCH-type domain containing protein.;Transcript_evidence=AK112106 (DDBJ%2C Best hit);ORF_evidence=B9F0K4 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571),U2 auxiliary factor small subunit (IPR009145);NIAS_FLcDNA=002-111-A03;Oryzabase=8579;TENOR=Os02t0557500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	21113982	21113983	.	+	.	Parent=Os02t0557500-01
Chr02	irgsp1_rep	CDS	21113984	21114043	.	+	0	Parent=Os02t0557500-01
Chr02	irgsp1_rep	CDS	21114229	21114303	.	+	0	Parent=Os02t0557500-01
Chr02	irgsp1_rep	CDS	21114484	21114710	.	+	0	Parent=Os02t0557500-01
Chr02	irgsp1_rep	CDS	21114806	21115679	.	+	1	Parent=Os02t0557500-01
Chr02	irgsp1_rep	three_prime_UTR	21115680	21115838	.	+	.	Parent=Os02t0557500-01
Chr02	irgsp1_rep	mRNA	21115929	21122111	.	-	.	ID=Os02t0557600-01;Name=Os02t0557600-01;Locus_id=Os02g0557600;Note=Translation initiation factor SUI1 domain containing protein.;Transcript_evidence=AK064926 (DDBJ%2C Best hit);ORF_evidence=B6U1M3 (UniProt);GO=Biological Process: translational initiation (GO:0006413),Molecular Function: RNA binding (GO:0003723),Molecular Function: translation initiation factor activity (GO:0003743),Molecular Function: protein binding (GO:0005515);InterPro=Translation initiation factor SUI1 (IPR001950),Pseudouridine synthase/archaeosine transglycosylase (IPR002478),SWIB/MDM2 domain (IPR003121),PUA-like domain (IPR015947);NIAS_FLcDNA=J013000N18;Expression=AK064926;TENOR=Os02t0557600-01;KEGG=Os02t0557600-01
Chr02	irgsp1_rep	five_prime_UTR	21122025	21122111	.	-	.	Parent=Os02t0557600-01
Chr02	irgsp1_rep	five_prime_UTR	21121361	21121372	.	-	.	Parent=Os02t0557600-01
Chr02	irgsp1_rep	CDS	21121226	21121360	.	-	0	Parent=Os02t0557600-01
Chr02	irgsp1_rep	CDS	21120769	21120880	.	-	0	Parent=Os02t0557600-01
Chr02	irgsp1_rep	CDS	21119145	21119335	.	-	2	Parent=Os02t0557600-01
Chr02	irgsp1_rep	CDS	21118930	21119025	.	-	0	Parent=Os02t0557600-01
Chr02	irgsp1_rep	CDS	21118452	21118852	.	-	0	Parent=Os02t0557600-01
Chr02	irgsp1_rep	CDS	21117895	21118003	.	-	1	Parent=Os02t0557600-01
Chr02	irgsp1_rep	CDS	21117092	21117363	.	-	0	Parent=Os02t0557600-01
Chr02	irgsp1_rep	CDS	21116576	21116946	.	-	1	Parent=Os02t0557600-01
Chr02	irgsp1_rep	CDS	21116349	21116473	.	-	2	Parent=Os02t0557600-01
Chr02	irgsp1_rep	three_prime_UTR	21115929	21116348	.	-	.	Parent=Os02t0557600-01
Chr02	irgsp1_rep	mRNA	21122299	21125132	.	+	.	ID=Os02t0557700-01;Name=Os02t0557700-01;Locus_id=Os02g0557700;Note=Short-chain dehydrogenase/reductase SDR domain containing protein.;Transcript_evidence=AK065290 (DDBJ%2C Best hit);ORF_evidence=NP_563866.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);NIAS_FLcDNA=J013002N01;Expression=AK065290;TENOR=Os02t0557700-01;KEGG=Os02t0557700-01
Chr02	irgsp1_rep	five_prime_UTR	21122299	21122309	.	+	.	Parent=Os02t0557700-01
Chr02	irgsp1_rep	CDS	21122310	21122546	.	+	0	Parent=Os02t0557700-01
Chr02	irgsp1_rep	CDS	21123014	21123083	.	+	0	Parent=Os02t0557700-01
Chr02	irgsp1_rep	CDS	21123252	21123445	.	+	2	Parent=Os02t0557700-01
Chr02	irgsp1_rep	CDS	21123534	21123710	.	+	0	Parent=Os02t0557700-01
Chr02	irgsp1_rep	three_prime_UTR	21123711	21125132	.	+	.	Parent=Os02t0557700-01
Chr02	irgsp1_rep	mRNA	21128650	21131368	.	-	.	ID=Os02t0557800-01;Name=Os02t0557800-01;Locus_id=Os02g0557800;RAP-DB Gene Symbol Synonym(s)=RR2%2C rr2%2C Osrr2%2C OsRR2%2C Rra10%2C OsRRA10;RAP-DB Gene Name Synonym(s)=A-TYPE RESPONSE REGULATOR 2%2C A-TYPE response regulator 2%2C Type A response regulator 2%2C A-type RR 10;CGSNL Gene Symbol=RR2;CGSNL Gene Name=A-TYPE RESPONSE REGULATOR 2;Oryzabase Gene Symbol Synonym(s)=rr2%2C Osrr2%2C OsRR2%2C Rra10%2C OsRRA10;Oryzabase Gene Name Synonym(s)=A-TYPE response regulator 2%2C Type A response regulator 2%2C A-type RR 10;Note=A-type response regulator%2C Cytokinin signaling;Transcript_evidence=AK070645 (Genbank),AB249662 (Genbank),BR000312 (Genbank);ORF_evidence=Q6YVX7 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: two-component response regulator activity (GO:0000156);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),CheY-like superfamily (IPR011006);NIAS_FLcDNA=J023061L14;Manual Curation=April 9%2C 2010;Literature_PMID=16919402,16472405,17293362;Oryzabase=8159;Expression=AK070645;TENOR=Os02t0557800-01;KEGG=Os02t0557800-01
Chr02	irgsp1_rep	five_prime_UTR	21131206	21131368	.	-	.	Parent=Os02t0557800-01
Chr02	irgsp1_rep	CDS	21131073	21131205	.	-	0	Parent=Os02t0557800-01
Chr02	irgsp1_rep	CDS	21130875	21130981	.	-	2	Parent=Os02t0557800-01
Chr02	irgsp1_rep	CDS	21130418	21130495	.	-	0	Parent=Os02t0557800-01
Chr02	irgsp1_rep	CDS	21130239	21130309	.	-	0	Parent=Os02t0557800-01
Chr02	irgsp1_rep	CDS	21129778	21130001	.	-	1	Parent=Os02t0557800-01
Chr02	irgsp1_rep	CDS	21129391	21129536	.	-	2	Parent=Os02t0557800-01
Chr02	irgsp1_rep	three_prime_UTR	21128650	21129390	.	-	.	Parent=Os02t0557800-01
Chr02	irgsp1_rep	mRNA	21128876	21131340	.	-	.	ID=Os02t0557800-02;Name=Os02t0557800-02;Locus_id=Os02g0557800;RAP-DB Gene Symbol Synonym(s)=OSRR2%2C OsRR2%2C Osrr2%2C rr2;RAP-DB Gene Name Synonym(s)=A-TYPE RESPONSE REGULATOR 2%2C A-type response regulator 2%2C A-TYPE response regulator 2%2C Type A response regulator 2;CGSNL Gene Symbol=RR2;CGSNL Gene Name=A-TYPE RESPONSE REGULATOR 2;Oryzabase Gene Symbol Synonym(s)=rr2%2C Osrr2%2C OsRR2%2C Rra10%2C OsRRA10;Oryzabase Gene Name Synonym(s)=A-TYPE response regulator 2%2C Type A response regulator 2%2C A-type RR 10;Note=A-type response regulator%2C Cytokinin signaling;Transcript_evidence=AK069453 (Genbank),AB249662 (Genbank),BR000312 (Genbank);ORF_evidence=Q6YVX7 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: two-component response regulator activity (GO:0000156);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),CheY-like superfamily (IPR011006);NIAS_FLcDNA=J023020J18;Manual Curation=April 9%2C 2010;Literature_PMID=16919402,16472405,17293362;Oryzabase=8159;Expression=AK069453;TENOR=Os02t0557800-02;KEGG=Os02t0557800-02
Chr02	irgsp1_rep	five_prime_UTR	21131206	21131340	.	-	.	Parent=Os02t0557800-02
Chr02	irgsp1_rep	CDS	21131073	21131205	.	-	0	Parent=Os02t0557800-02
Chr02	irgsp1_rep	CDS	21130875	21130981	.	-	2	Parent=Os02t0557800-02
Chr02	irgsp1_rep	CDS	21130418	21130495	.	-	0	Parent=Os02t0557800-02
Chr02	irgsp1_rep	CDS	21130239	21130309	.	-	0	Parent=Os02t0557800-02
Chr02	irgsp1_rep	CDS	21129778	21130001	.	-	1	Parent=Os02t0557800-02
Chr02	irgsp1_rep	CDS	21129391	21129536	.	-	2	Parent=Os02t0557800-02
Chr02	irgsp1_rep	three_prime_UTR	21128876	21129390	.	-	.	Parent=Os02t0557800-02
Chr02	irgsp1_rep	mRNA	21150702	21161514	.	-	.	ID=Os02t0558100-01;Name=Os02t0558100-01;Locus_id=Os02g0558100;CGSNL Gene Symbol=CBSCLC3;CGSNL Gene Name=CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsCBSCLC3%2C OsCBSCLC3a%2C OsCBSCLC3b%2C OsCLC1%2C OsCLC-1;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSCLC3%2C CBS domain containing protein OsCBSCLC3%2C CBS domain containing protein 3%2C Cl-channel 1;Note=Similar to Chloride channel (Fragment).;Transcript_evidence=AK066353 (DDBJ%2C Best hit);ORF_evidence=Q8LPA1 (UniProt);GO=Biological Process: chloride transport (GO:0006821),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: ion channel activity (GO:0005216),Molecular Function: voltage-gated chloride channel activity (GO:0005247);InterPro=Chloride channel%2C voltage gated (IPR001807),Chloride channel%2C core (IPR014743);NIAS_FLcDNA=J013063B06;Oryzabase=10332;TENOR=Os02t0558100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	21161233	21161514	.	-	.	Parent=Os02t0558100-01
Chr02	irgsp1_rep	five_prime_UTR	21156632	21156737	.	-	.	Parent=Os02t0558100-01
Chr02	irgsp1_rep	CDS	21156375	21156631	.	-	0	Parent=Os02t0558100-01
Chr02	irgsp1_rep	CDS	21155390	21155590	.	-	1	Parent=Os02t0558100-01
Chr02	irgsp1_rep	CDS	21154925	21154937	.	-	1	Parent=Os02t0558100-01
Chr02	irgsp1_rep	three_prime_UTR	21154755	21154924	.	-	.	Parent=Os02t0558100-01
Chr02	irgsp1_rep	three_prime_UTR	21153649	21153911	.	-	.	Parent=Os02t0558100-01
Chr02	irgsp1_rep	three_prime_UTR	21152938	21153207	.	-	.	Parent=Os02t0558100-01
Chr02	irgsp1_rep	three_prime_UTR	21151695	21152826	.	-	.	Parent=Os02t0558100-01
Chr02	irgsp1_rep	three_prime_UTR	21150702	21151090	.	-	.	Parent=Os02t0558100-01
Chr02	irgsp1_rep	mRNA	21150709	21161368	.	-	.	ID=Os02t0558100-02;Name=Os02t0558100-02;Locus_id=Os02g0558100;CGSNL Gene Symbol=CBSCLC3;CGSNL Gene Name=CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsCBSCLC3%2C OsCBSCLC3a%2C OsCBSCLC3b%2C OsCLC1%2C OsCLC-1;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSCLC3%2C CBS domain containing protein OsCBSCLC3%2C CBS domain containing protein 3%2C Cl-channel 1;Note=Chloride channel (Fragment).;Transcript_evidence=AK069669 (DDBJ%2C Best hit);ORF_evidence=Q8LPA1 (UniProt);GO=Biological Process: chloride transport (GO:0006821),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: ion channel activity (GO:0005216),Molecular Function: voltage-gated chloride channel activity (GO:0005247),Molecular Function: protein binding (GO:0005515);InterPro=Cystathionine beta-synthase%2C core (IPR000644),Chloride channel%2C voltage gated (IPR001807),Chloride channel ClC-plant (IPR002251),Chloride channel%2C core (IPR014743);NIAS_FLcDNA=J023028O13;Oryzabase=10332;Expression=AK069669;TENOR=Os02t0558100-02;KEGG=Os02t0558100-02
Chr02	irgsp1_rep	five_prime_UTR	21161233	21161368	.	-	.	Parent=Os02t0558100-02
Chr02	irgsp1_rep	five_prime_UTR	21156632	21156737	.	-	.	Parent=Os02t0558100-02
Chr02	irgsp1_rep	CDS	21156375	21156631	.	-	0	Parent=Os02t0558100-02
Chr02	irgsp1_rep	CDS	21155390	21155590	.	-	1	Parent=Os02t0558100-02
Chr02	irgsp1_rep	CDS	21154755	21154932	.	-	1	Parent=Os02t0558100-02
Chr02	irgsp1_rep	CDS	21153649	21153911	.	-	0	Parent=Os02t0558100-02
Chr02	irgsp1_rep	CDS	21152938	21153207	.	-	1	Parent=Os02t0558100-02
Chr02	irgsp1_rep	CDS	21151695	21152826	.	-	1	Parent=Os02t0558100-02
Chr02	irgsp1_rep	CDS	21150977	21151090	.	-	0	Parent=Os02t0558100-02
Chr02	irgsp1_rep	three_prime_UTR	21150709	21150976	.	-	.	Parent=Os02t0558100-02
Chr02	irgsp1_rep	mRNA	21150709	21152550	.	-	.	ID=Os02t0558100-03;Name=Os02t0558100-03;Locus_id=Os02g0558100;CGSNL Gene Symbol=CBSCLC3;CGSNL Gene Name=CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsCBSCLC3%2C OsCBSCLC3a%2C OsCBSCLC3b%2C OsCLC1%2C OsCLC-1;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSCLC3%2C CBS domain containing protein OsCBSCLC3%2C CBS domain containing protein 3%2C Cl-channel 1;Note=Similar to Chloride channel (Fragment).;Transcript_evidence=AK062032 (DDBJ%2C Best hit);ORF_evidence=Q8LPA1 (UniProt);GO=Biological Process: chloride transport (GO:0006821),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: ion channel activity (GO:0005216),Molecular Function: voltage-gated chloride channel activity (GO:0005247),Molecular Function: protein binding (GO:0005515);InterPro=Cystathionine beta-synthase%2C core (IPR000644),Chloride channel%2C voltage gated (IPR001807),Chloride channel%2C core (IPR014743);NIAS_FLcDNA=001-043-H01;Oryzabase=10332;Expression=AK062032;TENOR=Os02t0558100-03;KEGG=Os02t0558100-03
Chr02	irgsp1_rep	five_prime_UTR	21152550	21152550	.	-	.	Parent=Os02t0558100-03
Chr02	irgsp1_rep	CDS	21151695	21152549	.	-	0	Parent=Os02t0558100-03
Chr02	irgsp1_rep	CDS	21150977	21151090	.	-	0	Parent=Os02t0558100-03
Chr02	irgsp1_rep	three_prime_UTR	21150709	21150976	.	-	.	Parent=Os02t0558100-03
Chr02	irgsp1_rep	mRNA	21151016	21156623	.	+	.	ID=Os02t0558200-00;Name=Os02t0558200-00;Locus_id=Os02g0558200;Note=Hypothetical protein.;Transcript_evidence=tplb0045d11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0558200-00
Chr02	irgsp1_rep	five_prime_UTR	21151016	21151083	.	+	.	Parent=Os02t0558200-00
Chr02	irgsp1_rep	five_prime_UTR	21151688	21152265	.	+	.	Parent=Os02t0558200-00
Chr02	irgsp1_rep	CDS	21152266	21152649	.	+	0	Parent=Os02t0558200-00
Chr02	irgsp1_rep	three_prime_UTR	21152650	21152825	.	+	.	Parent=Os02t0558200-00
Chr02	irgsp1_rep	three_prime_UTR	21152937	21153205	.	+	.	Parent=Os02t0558200-00
Chr02	irgsp1_rep	three_prime_UTR	21153647	21153918	.	+	.	Parent=Os02t0558200-00
Chr02	irgsp1_rep	three_prime_UTR	21154765	21154937	.	+	.	Parent=Os02t0558200-00
Chr02	irgsp1_rep	three_prime_UTR	21155390	21155577	.	+	.	Parent=Os02t0558200-00
Chr02	irgsp1_rep	three_prime_UTR	21156356	21156623	.	+	.	Parent=Os02t0558200-00
Chr02	irgsp1_rep	mRNA	21165035	21165686	.	+	.	ID=Os02t0558300-01;Name=Os02t0558300-01;Locus_id=Os02g0558300;Note=ThiamineS domain containing protein.;Transcript_evidence=AK243084 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: Mo-molybdopterin cofactor biosynthetic process (GO:0006777);InterPro=ThiamineS (IPR003749),Molybdopterin converting factor%2C subunit 1 (IPR010034),Beta-grasp fold%2C ferredoxin-type (IPR012675),Molybdopterin synthase/thiamin biosynthesis sulphur carrier%2C beta-grasp (IPR016155);NIAS_FLcDNA=J100020N17;TENOR=Os02t0558300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	21165035	21165415	.	+	0	Parent=Os02t0558300-01
Chr02	irgsp1_rep	three_prime_UTR	21165416	21165686	.	+	.	Parent=Os02t0558300-01
Chr02	irgsp1_rep	mRNA	21171076	21173954	.	-	.	ID=Os02t0558500-01;Name=Os02t0558500-01;Locus_id=Os02g0558500;Note=Conserved hypothetical protein.;Transcript_evidence=AK072724 (DDBJ%2C Best hit);ORF_evidence=B8ADX9 (UniProt);NIAS_FLcDNA=J023139K17;Expression=AK072724;TENOR=Os02t0558500-01;KEGG=Os02t0558500-01
Chr02	irgsp1_rep	five_prime_UTR	21173883	21173954	.	-	.	Parent=Os02t0558500-01
Chr02	irgsp1_rep	CDS	21173585	21173882	.	-	0	Parent=Os02t0558500-01
Chr02	irgsp1_rep	CDS	21172833	21173476	.	-	2	Parent=Os02t0558500-01
Chr02	irgsp1_rep	CDS	21171424	21171543	.	-	0	Parent=Os02t0558500-01
Chr02	irgsp1_rep	three_prime_UTR	21171076	21171423	.	-	.	Parent=Os02t0558500-01
Chr02	irgsp1_rep	mRNA	21174988	21180171	.	-	.	ID=Os02t0558600-01;Name=Os02t0558600-01;Locus_id=Os02g0558600;Note=Conserved hypothetical protein.;Transcript_evidence=AK063457 (DDBJ%2C Best hit);ORF_evidence=B8ADY0 (UniProt);NIAS_FLcDNA=001-115-G08;Expression=AK063457;TENOR=Os02t0558600-01;KEGG=Os02t0558600-01
Chr02	irgsp1_rep	five_prime_UTR	21180022	21180171	.	-	.	Parent=Os02t0558600-01
Chr02	irgsp1_rep	five_prime_UTR	21179113	21179203	.	-	.	Parent=Os02t0558600-01
Chr02	irgsp1_rep	CDS	21179032	21179112	.	-	0	Parent=Os02t0558600-01
Chr02	irgsp1_rep	CDS	21178040	21178783	.	-	0	Parent=Os02t0558600-01
Chr02	irgsp1_rep	CDS	21177059	21177580	.	-	0	Parent=Os02t0558600-01
Chr02	irgsp1_rep	CDS	21176741	21176799	.	-	0	Parent=Os02t0558600-01
Chr02	irgsp1_rep	CDS	21176566	21176649	.	-	1	Parent=Os02t0558600-01
Chr02	irgsp1_rep	CDS	21176403	21176481	.	-	1	Parent=Os02t0558600-01
Chr02	irgsp1_rep	CDS	21176185	21176286	.	-	0	Parent=Os02t0558600-01
Chr02	irgsp1_rep	CDS	21175833	21175918	.	-	0	Parent=Os02t0558600-01
Chr02	irgsp1_rep	CDS	21175325	21175349	.	-	1	Parent=Os02t0558600-01
Chr02	irgsp1_rep	three_prime_UTR	21174988	21175324	.	-	.	Parent=Os02t0558600-01
Chr02	irgsp1_rep	mRNA	21184134	21184694	.	-	.	ID=Os02t0558700-00;Name=Os02t0558700-00;Locus_id=Os02g0558700;CGSNL Gene Symbol=ERF21;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 21;Oryzabase Gene Symbol Synonym(s)=OsERF#021%2C OsERF021%2C OsERF21%2C AP2/EREBP#140%2C AP2/EREBP140;Oryzabase Gene Name Synonym(s)=ethylene response factor 21%2C APETALA2/ethylene-responsive element binding protein 140;Note=Similar to dehydration-responsive element-binding protein 1D.;Transcript_evidence=AY785906 (DDBJ);ORF_evidence=Q6YVX0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);Oryzabase=10545;TENOR=Os02t0558700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	21184689	21184694	.	-	.	Parent=Os02t0558700-00
Chr02	irgsp1_rep	CDS	21184134	21184688	.	-	0	Parent=Os02t0558700-00
Chr02	irgsp1_rep	mRNA	21225043	21228707	.	+	.	ID=Os02t0559300-01;Name=Os02t0559300-01;Locus_id=Os02g0559300;Oryzabase Gene Symbol Synonym(s)=Orysa%3BCKL9;Oryzabase Gene Name Synonym(s)=CDK-LIKE 9%2C cyclin-dependent kinase-like 9;Note=Hypothetical conserved gene.;Transcript_evidence=AK100088 (DDBJ%2C Best hit);ORF_evidence=Q6YU33 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023003H24;Oryzabase=13307;Expression=AK100088;TENOR=Os02t0559300-01;KEGG=Os02t0559300-01
Chr02	irgsp1_rep	five_prime_UTR	21225043	21225348	.	+	.	Parent=Os02t0559300-01
Chr02	irgsp1_rep	CDS	21225349	21226443	.	+	0	Parent=Os02t0559300-01
Chr02	irgsp1_rep	CDS	21226527	21226754	.	+	0	Parent=Os02t0559300-01
Chr02	irgsp1_rep	CDS	21226846	21227064	.	+	0	Parent=Os02t0559300-01
Chr02	irgsp1_rep	CDS	21227163	21227606	.	+	0	Parent=Os02t0559300-01
Chr02	irgsp1_rep	CDS	21228046	21228237	.	+	0	Parent=Os02t0559300-01
Chr02	irgsp1_rep	three_prime_UTR	21228238	21228707	.	+	.	Parent=Os02t0559300-01
Chr02	irgsp1_rep	mRNA	21225148	21228706	.	+	.	ID=Os02t0559300-02;Name=Os02t0559300-02;Locus_id=Os02g0559300;Oryzabase Gene Symbol Synonym(s)=Orysa%3BCKL9;Oryzabase Gene Name Synonym(s)=CDK-LIKE 9%2C cyclin-dependent kinase-like 9;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK121206 (DDBJ%2C Best hit);ORF_evidence=Q6YU33 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023088A16;Oryzabase=13307;Expression=AK121206;TENOR=Os02t0559300-02;KEGG=Os02t0559300-02
Chr02	irgsp1_rep	five_prime_UTR	21225148	21225348	.	+	.	Parent=Os02t0559300-02
Chr02	irgsp1_rep	CDS	21225349	21226443	.	+	0	Parent=Os02t0559300-02
Chr02	irgsp1_rep	CDS	21226527	21226754	.	+	0	Parent=Os02t0559300-02
Chr02	irgsp1_rep	CDS	21226846	21227064	.	+	0	Parent=Os02t0559300-02
Chr02	irgsp1_rep	CDS	21227163	21227606	.	+	0	Parent=Os02t0559300-02
Chr02	irgsp1_rep	CDS	21228046	21228222	.	+	0	Parent=Os02t0559300-02
Chr02	irgsp1_rep	CDS	21228377	21228403	.	+	0	Parent=Os02t0559300-02
Chr02	irgsp1_rep	three_prime_UTR	21228404	21228706	.	+	.	Parent=Os02t0559300-02
Chr02	irgsp1_rep	mRNA	21228967	21231366	.	-	.	ID=Os02t0559400-01;Name=Os02t0559400-01;Locus_id=Os02g0559400;RAP-DB Gene Symbol Synonym(s)=OPR8%2C OsOPR02-1%2C OsOPR8;RAP-DB Gene Name Synonym(s)=12-OXOPHYTODIENOATE REDUCTASE 8%2C 12-oxo-phytodienoic acid reductase 8;CGSNL Gene Symbol=OPR8;CGSNL Gene Name=12-OXOPHYTODIENOATE REDUCTASE 8;Oryzabase Gene Symbol Synonym(s)=OsOPR8%2C OsOPR7%2C OsOPR02-1;Oryzabase Gene Name Synonym(s)=12-oxo-phytodienoic acid reductase 8;Note=12-oxophytodienoic acid reductase (EC:1.3.1.-)%2C Jasmonic acid (JA)-mediated defense signaling;Transcript_evidence=AK069898;ORF_evidence=Q0E0C6;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldolase-type TIM barrel (IPR013785),NADH:flavin oxidoreductase/NADH oxidase%2C N-terminal (IPR001155);NIAS_FLcDNA=J023036E18;Manual Curation=May 9%2C 2017;Literature_PMID=23602899,21249367;Oryzabase=8762;TENOR=Os02t0559400-01;Subcellular location=cytosol (GO:0005829), peroxisome (GO:0005777)
Chr02	irgsp1_rep	five_prime_UTR	21231343	21231366	.	-	.	Parent=Os02t0559400-01
Chr02	irgsp1_rep	CDS	21231158	21231342	.	-	0	Parent=Os02t0559400-01
Chr02	irgsp1_rep	CDS	21230547	21230818	.	-	1	Parent=Os02t0559400-01
Chr02	irgsp1_rep	CDS	21229846	21230019	.	-	2	Parent=Os02t0559400-01
Chr02	irgsp1_rep	CDS	21229055	21229644	.	-	2	Parent=Os02t0559400-01
Chr02	irgsp1_rep	three_prime_UTR	21228967	21229054	.	-	.	Parent=Os02t0559400-01
Chr02	irgsp1_rep	mRNA	21228965	21231281	.	-	.	ID=Os02t0559400-02;Name=Os02t0559400-02;Locus_id=Os02g0559400;CGSNL Gene Symbol=OPR8;CGSNL Gene Name=12-OXOPHYTODIENOATE REDUCTASE 8;Oryzabase Gene Symbol Synonym(s)=OsOPR8%2C OsOPR7%2C OsOPR02-1;Oryzabase Gene Name Synonym(s)=12-oxo-phytodienoic acid reductase 8;Note=Similar to 12-oxo-phytodienoic acid reductase5.;Transcript_evidence=AK059887 (DDBJ%2C Best hit);ORF_evidence=NP_001105909.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=NADH:flavin oxidoreductase/NADH oxidase%2C N-terminal (IPR001155),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=006-208-B12;Oryzabase=8762;TENOR=Os02t0559400-02
Chr02	irgsp1_rep	five_prime_UTR	21231220	21231281	.	-	.	Parent=Os02t0559400-02
Chr02	irgsp1_rep	CDS	21231158	21231219	.	-	0	Parent=Os02t0559400-02
Chr02	irgsp1_rep	CDS	21230547	21230818	.	-	1	Parent=Os02t0559400-02
Chr02	irgsp1_rep	CDS	21229846	21230019	.	-	2	Parent=Os02t0559400-02
Chr02	irgsp1_rep	CDS	21229055	21229644	.	-	2	Parent=Os02t0559400-02
Chr02	irgsp1_rep	three_prime_UTR	21228965	21229054	.	-	.	Parent=Os02t0559400-02
Chr02	irgsp1_rep	mRNA	21246217	21246756	.	+	.	ID=Os02t0559500-00;Name=Os02t0559500-00;Locus_id=Os02g0559500;Note=Conserved hypothetical protein.;Transcript_evidence=CT837652 (DDBJ%2C Best hit);ORF_evidence=Q6YU31 (UniProt);TENOR=Os02t0559500-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	21246217	21246279	.	+	.	Parent=Os02t0559500-00
Chr02	irgsp1_rep	CDS	21246280	21246609	.	+	0	Parent=Os02t0559500-00
Chr02	irgsp1_rep	three_prime_UTR	21246610	21246756	.	+	.	Parent=Os02t0559500-00
Chr02	irgsp1_rep	mRNA	21250083	21251343	.	-	.	ID=Os02t0559800-01;Name=Os02t0559800-01;Locus_id=Os02g0559800;RAP-DB Gene Symbol Synonym(s)=EL5%2C EL5.1;RAP-DB Gene Name Synonym(s)=ELICITOR 5%2C E3 ubiquitin-protein ligase EL5;CGSNL Gene Symbol=EL5;CGSNL Gene Name=ELICITOR 5;Oryzabase Gene Symbol Synonym(s)=EL5.1%2C EL5.2%2C EL5.3%2C EL5.4%2C EL5.5%2C EL5.6;Oryzabase Gene Name Synonym(s)=E3 ubiquitin-protein ligase EL5;Note=RING-H2 type E3 ubiquitin ligase%2C Root development%2C Maintenance of cell viability after the initiation of root primordial formation%2C Defense response;Transcript_evidence=AB045120,AK243670;ORF_evidence=Q9LRB7;GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841);NIAS_FLcDNA=J100089N18;Manual Curation=March 10%2C 2016;Literature_PMID=17559513,12028574,11448732;Oryzabase=8739;TENOR=Os02t0559800-01;KEGG=Os02t0559800-01
Chr02	irgsp1_rep	five_prime_UTR	21251314	21251343	.	-	.	Parent=Os02t0559800-01
Chr02	irgsp1_rep	CDS	21250336	21251313	.	-	0	Parent=Os02t0559800-01
Chr02	irgsp1_rep	three_prime_UTR	21250083	21250335	.	-	.	Parent=Os02t0559800-01
Chr02	irgsp1_rep	mRNA	21255243	21255782	.	+	.	ID=Os02t0559900-00;Name=Os02t0559900-00;Locus_id=Os02g0559900;Note=Conserved hypothetical protein.;Transcript_evidence=CT837652 (DDBJ%2C Best hit);ORF_evidence=Q6YU31 (UniProt);TENOR=Os02t0559900-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	21255243	21255305	.	+	.	Parent=Os02t0559900-00
Chr02	irgsp1_rep	CDS	21255306	21255635	.	+	0	Parent=Os02t0559900-00
Chr02	irgsp1_rep	three_prime_UTR	21255636	21255782	.	+	.	Parent=Os02t0559900-00
Chr02	irgsp1_rep	mRNA	21229067	21230820	.	+	.	ID=Os02t0559925-00;Name=Os02t0559925-00;Locus_id=Os02g0559925;Note=Hypothetical protein.;Transcript_evidence=EU947281 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0559925-00
Chr02	irgsp1_rep	five_prime_UTR	21229067	21229636	.	+	.	Parent=Os02t0559925-00
Chr02	irgsp1_rep	five_prime_UTR	21229833	21229835	.	+	.	Parent=Os02t0559925-00
Chr02	irgsp1_rep	CDS	21229836	21229997	.	+	0	Parent=Os02t0559925-00
Chr02	irgsp1_rep	CDS	21230521	21230820	.	+	0	Parent=Os02t0559925-00
Chr02	irgsp1_rep	mRNA	21259109	21260369	.	-	.	ID=Os02t0560200-01;Name=Os02t0560200-01;Locus_id=Os02g0560200;RAP-DB Gene Symbol Synonym(s)=EL5%2C EL5.2;RAP-DB Gene Name Synonym(s)=ELICITOR 5%2C E3 ubiquitin-protein ligase EL5;Note=RING-H2 type E3 ubiquitin ligase%2C Root development%2C Maintenance of cell viability after the initiation of root primordial formation%2C Defense response;Transcript_evidence=AB045120,AK243670;ORF_evidence=Q9LRB7;GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841);NIAS_FLcDNA=J100089N18;Manual Curation=April 6%2C 2016;Literature_PMID=17559513,12028574,11448732;TENOR=Os02t0560200-01;KEGG=Os02t0560200-01
Chr02	irgsp1_rep	five_prime_UTR	21260340	21260369	.	-	.	Parent=Os02t0560200-01
Chr02	irgsp1_rep	CDS	21259362	21260339	.	-	0	Parent=Os02t0560200-01
Chr02	irgsp1_rep	three_prime_UTR	21259109	21259361	.	-	.	Parent=Os02t0560200-01
Chr02	irgsp1_rep	mRNA	21264269	21264808	.	+	.	ID=Os02t0560300-00;Name=Os02t0560300-00;Locus_id=Os02g0560300;Note=Conserved hypothetical protein.;Transcript_evidence=CT837652 (DDBJ%2C Best hit);ORF_evidence=Q6YU31 (UniProt);TENOR=Os02t0560300-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	21264269	21264331	.	+	.	Parent=Os02t0560300-00
Chr02	irgsp1_rep	CDS	21264332	21264661	.	+	0	Parent=Os02t0560300-00
Chr02	irgsp1_rep	three_prime_UTR	21264662	21264808	.	+	.	Parent=Os02t0560300-00
Chr02	irgsp1_rep	mRNA	21234555	21235372	.	-	.	ID=Os02t0560450-00;Name=Os02t0560450-00;Locus_id=Os02g0560450;Note=CytoChrome c oxidase biogenesis protein Cmc1-like domain containing protein.;Transcript_evidence=CT836531 (DDBJ%2C Best hit);ORF_evidence=B8BJN1 (UniProt);InterPro=CytoChrome c oxidase biogenesis protein Cmc1-like (IPR013892);TENOR=Os02t0560450-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	21235368	21235372	.	-	.	Parent=Os02t0560450-00
Chr02	irgsp1_rep	CDS	21235302	21235367	.	-	0	Parent=Os02t0560450-00
Chr02	irgsp1_rep	CDS	21235119	21235223	.	-	0	Parent=Os02t0560450-00
Chr02	irgsp1_rep	CDS	21234909	21235007	.	-	0	Parent=Os02t0560450-00
Chr02	irgsp1_rep	three_prime_UTR	21234555	21234908	.	-	.	Parent=Os02t0560450-00
Chr02	irgsp1_rep	mRNA	21268135	21269395	.	-	.	ID=Os02t0560600-01;Name=Os02t0560600-01;Locus_id=Os02g0560600;RAP-DB Gene Symbol Synonym(s)=EL5%2C EL5.3;RAP-DB Gene Name Synonym(s)=ELICITOR 5%2C E3 ubiquitin-protein ligase EL5;Note=RING-H2 type E3 ubiquitin ligase%2C Root development%2C Maintenance of cell viability after the initiation of root primordial formation%2C Defense response;Transcript_evidence=AB045120,AK243670;ORF_evidence=Q9LRB7;GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841);NIAS_FLcDNA=J100089N18;Manual Curation=April 6%2C 2016;Literature_PMID=17559513,12028574,11448732;TENOR=Os02t0560600-01;KEGG=Os02t0560600-01
Chr02	irgsp1_rep	five_prime_UTR	21269366	21269395	.	-	.	Parent=Os02t0560600-01
Chr02	irgsp1_rep	CDS	21268388	21269365	.	-	0	Parent=Os02t0560600-01
Chr02	irgsp1_rep	three_prime_UTR	21268135	21268387	.	-	.	Parent=Os02t0560600-01
Chr02	irgsp1_rep	mRNA	21273295	21273834	.	+	.	ID=Os02t0560700-00;Name=Os02t0560700-00;Locus_id=Os02g0560700;Note=Conserved hypothetical protein.;Transcript_evidence=CT837652 (DDBJ%2C Best hit);ORF_evidence=Q6YU31 (UniProt);TENOR=Os02t0560700-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	21273295	21273357	.	+	.	Parent=Os02t0560700-00
Chr02	irgsp1_rep	CDS	21273358	21273687	.	+	0	Parent=Os02t0560700-00
Chr02	irgsp1_rep	three_prime_UTR	21273688	21273834	.	+	.	Parent=Os02t0560700-00
Chr02	irgsp1_rep	mRNA	21277161	21278421	.	-	.	ID=Os02t0561000-01;Name=Os02t0561000-01;Locus_id=Os02g0561000;RAP-DB Gene Symbol Synonym(s)=EL5%2C EL5.4;RAP-DB Gene Name Synonym(s)=ELICITOR 5%2C E3 ubiquitin-protein ligase EL5;Note=RING-H2 type E3 ubiquitin ligase%2C Root development%2C Maintenance of cell viability after the initiation of root primordial formation%2C Defense response;Transcript_evidence=AB045120,AK243670;ORF_evidence=Q9LRB7;GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841);NIAS_FLcDNA=J100089N18;Manual Curation=April 6%2C 2016;Literature_PMID=17559513,12028574,11448732;TENOR=Os02t0561000-01;KEGG=Os02t0561000-01
Chr02	irgsp1_rep	five_prime_UTR	21278392	21278421	.	-	.	Parent=Os02t0561000-01
Chr02	irgsp1_rep	CDS	21277414	21278391	.	-	0	Parent=Os02t0561000-01
Chr02	irgsp1_rep	three_prime_UTR	21277161	21277413	.	-	.	Parent=Os02t0561000-01
Chr02	irgsp1_rep	mRNA	21282321	21282860	.	+	.	ID=Os02t0561100-00;Name=Os02t0561100-00;Locus_id=Os02g0561100;Note=Conserved hypothetical protein.;Transcript_evidence=CT837652 (DDBJ%2C Best hit);ORF_evidence=Q6YU31 (UniProt);TENOR=Os02t0561100-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	21282321	21282383	.	+	.	Parent=Os02t0561100-00
Chr02	irgsp1_rep	CDS	21282384	21282713	.	+	0	Parent=Os02t0561100-00
Chr02	irgsp1_rep	three_prime_UTR	21282714	21282860	.	+	.	Parent=Os02t0561100-00
Chr02	irgsp1_rep	mRNA	21286187	21287447	.	-	.	ID=Os02t0561400-01;Name=Os02t0561400-01;Locus_id=Os02g0561400;RAP-DB Gene Symbol Synonym(s)=EL5%2C EL5.5;RAP-DB Gene Name Synonym(s)=ELICITOR 5%2C E3 ubiquitin-protein ligase EL5;Note=RING-H2 type E3 ubiquitin ligase%2C Root development%2C Maintenance of cell viability after the initiation of root primordial formation%2C Defense response;Transcript_evidence=AB045120,AK243670;ORF_evidence=Q9LRB7;GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841);NIAS_FLcDNA=J100089N18;Manual Curation=April 6%2C 2016;Literature_PMID=17559513,12028574,11448732;TENOR=Os02t0561400-01;KEGG=Os02t0561400-01
Chr02	irgsp1_rep	five_prime_UTR	21287418	21287447	.	-	.	Parent=Os02t0561400-01
Chr02	irgsp1_rep	CDS	21286440	21287417	.	-	0	Parent=Os02t0561400-01
Chr02	irgsp1_rep	three_prime_UTR	21286187	21286439	.	-	.	Parent=Os02t0561400-01
Chr02	irgsp1_rep	mRNA	21290398	21291741	.	+	.	ID=Os02t0561500-00;Name=Os02t0561500-00;Locus_id=Os02g0561500;Note=Monooxygenase%2C FAD-binding domain containing protein.;Transcript_evidence=AK367305 (DDBJ);ORF_evidence=Q6YU31 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Monooxygenase%2C FAD-binding (IPR002938),Aromatic-ring hydroxylase-like (IPR003042);TENOR=Os02t0561500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	21290398	21290659	.	+	0	Parent=Os02t0561500-00
Chr02	irgsp1_rep	CDS	21291212	21291741	.	+	2	Parent=Os02t0561500-00
Chr02	irgsp1_rep	mRNA	21295214	21296474	.	-	.	ID=Os02t0561800-01;Name=Os02t0561800-01;Locus_id=Os02g0561800;RAP-DB Gene Symbol Synonym(s)=EL5%2C EL5.6;RAP-DB Gene Name Synonym(s)=ELICITOR 5%2C E3 ubiquitin-protein ligase EL5;Note=RING-H2 type E3 ubiquitin ligase%2C Root development%2C Maintenance of cell viability after the initiation of root primordial formation%2C Defense response;Transcript_evidence=AB045120,AK243670;ORF_evidence=Q9LRB7;GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841);NIAS_FLcDNA=J100089N18;Manual Curation=April 6%2C 2016;Literature_PMID=17559513,12028574,11448732;TENOR=Os02t0561800-01;KEGG=Os02t0561800-01
Chr02	irgsp1_rep	five_prime_UTR	21296445	21296474	.	-	.	Parent=Os02t0561800-01
Chr02	irgsp1_rep	CDS	21295467	21296444	.	-	0	Parent=Os02t0561800-01
Chr02	irgsp1_rep	three_prime_UTR	21295214	21295466	.	-	.	Parent=Os02t0561800-01
Chr02	irgsp1_rep	mRNA	21303988	21308677	.	-	.	ID=Os02t0561900-00;Name=Os02t0561900-00;Locus_id=Os02g0561900;Note=Similar to E3 ubiquitin-protein ligase EL5.;Transcript_evidence=BT040259 (DDBJ);ORF_evidence=Q9LRB7 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os02t0561900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	21308285	21308677	.	-	0	Parent=Os02t0561900-00
Chr02	irgsp1_rep	CDS	21303988	21304584	.	-	0	Parent=Os02t0561900-00
Chr02	irgsp1_rep	mRNA	21311981	21312243	.	-	.	ID=Os02t0562000-00;Name=Os02t0562000-00;Locus_id=Os02g0562000;Note=Hypothetical protein.;Transcript_evidence=AK375340 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0562000-00
Chr02	irgsp1_rep	CDS	21311981	21312243	.	-	0	Parent=Os02t0562000-00
Chr02	irgsp1_rep	mRNA	21312002	21312874	.	+	.	ID=Os02t0562100-00;Name=Os02t0562100-00;Locus_id=Os02g0562100;Oryzabase Gene Symbol Synonym(s)=XRCC3%2C OsXRCC3;Note=DNA repair and recombination%2C RecA-like domain containing protein.;Transcript_evidence=AK332394 (DDBJ);ORF_evidence=NP_001047150.1 (RefSeq);GO=Biological Process: DNA metabolic process (GO:0006259),Biological Process: DNA repair (GO:0006281),Molecular Function: DNA binding (GO:0003677),Molecular Function: damaged DNA binding (GO:0003684),Molecular Function: ATP binding (GO:0005524),Molecular Function: DNA-dependent ATPase activity (GO:0008094);InterPro=DNA repair protein RadA (IPR004504),DNA recombination and repair protein Rad51%2C C-terminal (IPR013632),DNA recombination and repair protein%2C RecA-like (IPR016467),DNA recombination/repair protein RecA/RadB%2C ATP-binding domain (IPR020588);Oryzabase=11621;TENOR=Os02t0562100-00;KEGG=Os02t0562100-00
Chr02	irgsp1_rep	CDS	21312002	21312874	.	+	0	Parent=Os02t0562100-00
Chr02	irgsp1_rep	mRNA	21319944	21325117	.	+	.	ID=Os02t0562300-01;Name=Os02t0562300-01;Locus_id=Os02g0562300;Note=Calmodulin binding protein-like family protein.;Transcript_evidence=AK073250 (DDBJ%2C Best hit);ORF_evidence=B6UE51 (UniProt);InterPro=Calmodulin binding protein-like (IPR012416);NIAS_FLcDNA=J033023A22;Expression=AK073250;TENOR=Os02t0562300-01;KEGG=Os02t0562300-01
Chr02	irgsp1_rep	five_prime_UTR	21319944	21320113	.	+	.	Parent=Os02t0562300-01
Chr02	irgsp1_rep	five_prime_UTR	21320217	21320287	.	+	.	Parent=Os02t0562300-01
Chr02	irgsp1_rep	CDS	21320288	21320412	.	+	0	Parent=Os02t0562300-01
Chr02	irgsp1_rep	CDS	21321511	21321586	.	+	1	Parent=Os02t0562300-01
Chr02	irgsp1_rep	CDS	21321691	21321749	.	+	0	Parent=Os02t0562300-01
Chr02	irgsp1_rep	CDS	21321886	21322379	.	+	1	Parent=Os02t0562300-01
Chr02	irgsp1_rep	CDS	21322467	21322627	.	+	2	Parent=Os02t0562300-01
Chr02	irgsp1_rep	CDS	21322706	21322909	.	+	0	Parent=Os02t0562300-01
Chr02	irgsp1_rep	CDS	21323341	21323572	.	+	0	Parent=Os02t0562300-01
Chr02	irgsp1_rep	CDS	21324238	21324845	.	+	2	Parent=Os02t0562300-01
Chr02	irgsp1_rep	three_prime_UTR	21324846	21325117	.	+	.	Parent=Os02t0562300-01
Chr02	irgsp1_rep	mRNA	21322725	21325117	.	+	.	ID=Os02t0562300-02;Name=Os02t0562300-02;Locus_id=Os02g0562300;Note=Hypothetical conserved gene.;Transcript_evidence=AK104737 (DDBJ%2C Best hit),AK061441 (DDBJ%2C Best hit);ORF_evidence=B8ADY6 (UniProt);InterPro=Calmodulin binding protein-like (IPR012416);NIAS_FLcDNA=001-038-D04,006-307-C04;Expression=AK104737;TENOR=Os02t0562300-02;KEGG=Os02t0562300-02
Chr02	irgsp1_rep	five_prime_UTR	21322725	21322726	.	+	.	Parent=Os02t0562300-02
Chr02	irgsp1_rep	CDS	21322727	21322909	.	+	0	Parent=Os02t0562300-02
Chr02	irgsp1_rep	CDS	21323341	21323572	.	+	0	Parent=Os02t0562300-02
Chr02	irgsp1_rep	CDS	21324238	21324845	.	+	2	Parent=Os02t0562300-02
Chr02	irgsp1_rep	three_prime_UTR	21324846	21325117	.	+	.	Parent=Os02t0562300-02
Chr02	irgsp1_rep	mRNA	21324192	21324772	.	-	.	ID=Os02t0562350-00;Name=Os02t0562350-00;Locus_id=Os02g0562350;Note=Non-protein coding transcript.;Transcript_evidence=EU949450 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0562350-00
Chr02	irgsp1_rep	exon	21324192	21324772	.	-	.	Parent=Os02t0562350-00
Chr02	irgsp1_rep	mRNA	21325447	21328424	.	-	.	ID=Os02t0562400-01;Name=Os02t0562400-01;Locus_id=Os02g0562400;Note=Ankyrin repeat containing protein.;Transcript_evidence=AK106570 (DDBJ%2C Best hit);ORF_evidence=Q9M1Y3 (UniProt);InterPro=Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=002-111-A04;Expression=AK106570;TENOR=Os02t0562400-01;KEGG=Os02t0562400-01
Chr02	irgsp1_rep	five_prime_UTR	21328423	21328424	.	-	.	Parent=Os02t0562400-01
Chr02	irgsp1_rep	CDS	21328208	21328422	.	-	0	Parent=Os02t0562400-01
Chr02	irgsp1_rep	CDS	21327687	21328122	.	-	1	Parent=Os02t0562400-01
Chr02	irgsp1_rep	CDS	21325706	21326497	.	-	0	Parent=Os02t0562400-01
Chr02	irgsp1_rep	three_prime_UTR	21325447	21325705	.	-	.	Parent=Os02t0562400-01
Chr02	irgsp1_rep	mRNA	21330472	21335235	.	-	.	ID=Os02t0562600-01;Name=Os02t0562600-01;Locus_id=Os02g0562600;CGSNL Gene Symbol=MLO_;CGSNL Gene Name=POWDERY-MILDEW-RESISTANCE GENE O_;Oryzabase Gene Symbol Synonym(s)=OsMLO10%2C MLO10;Oryzabase Gene Name Synonym(s)=powdery-MiLdew-resistance gene O10%2C Mildew resistance Locus O-10;Note=Similar to Seven trans-membrane protein (Fragment).;Transcript_evidence=AK121163 (DDBJ%2C Best hit);ORF_evidence=E2RZR9 (UniProt);GO=Biological Process: cell death (GO:0008219),Cellular Component: integral to membrane (GO:0016021);InterPro=Mlo-related protein (IPR004326);NIAS_FLcDNA=J023080H22;Oryzabase=9193;TENOR=Os02t0562600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	21335115	21335235	.	-	.	Parent=Os02t0562600-01
Chr02	irgsp1_rep	CDS	21334962	21335114	.	-	0	Parent=Os02t0562600-01
Chr02	irgsp1_rep	CDS	21334790	21334847	.	-	0	Parent=Os02t0562600-01
Chr02	irgsp1_rep	CDS	21334463	21334680	.	-	2	Parent=Os02t0562600-01
Chr02	irgsp1_rep	CDS	21333460	21333576	.	-	0	Parent=Os02t0562600-01
Chr02	irgsp1_rep	CDS	21333291	21333377	.	-	0	Parent=Os02t0562600-01
Chr02	irgsp1_rep	three_prime_UTR	21332871	21333290	.	-	.	Parent=Os02t0562600-01
Chr02	irgsp1_rep	three_prime_UTR	21332690	21332778	.	-	.	Parent=Os02t0562600-01
Chr02	irgsp1_rep	three_prime_UTR	21331440	21332578	.	-	.	Parent=Os02t0562600-01
Chr02	irgsp1_rep	three_prime_UTR	21330472	21331210	.	-	.	Parent=Os02t0562600-01
Chr02	irgsp1_rep	mRNA	21344262	21348525	.	+	.	ID=Os02t0562700-01;Name=Os02t0562700-01;Locus_id=Os02g0562700;RAP-DB Gene Symbol Synonym(s)=OsGR1%2C GLYR1;RAP-DB Gene Name Synonym(s)=glyoxylate reductase 1%2C glyoxylate/succinic semialdehyde reductases 1;CGSNL Gene Symbol=GLYR1;CGSNL Gene Name=GLYOXYLATE/SUCCINIC SEMIALDEHYDE REDUCTASE 1;Oryzabase Gene Symbol Synonym(s)=OsGLYR1;Oryzabase Gene Name Synonym(s)=gamma hydroxybutyrate dehydrogenase%2C glyoxylate/succinic semialdehyde reductase 1;Note=Glyoxylate reductase;Transcript_evidence=AK109435;ORF_evidence=Q84VC8;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: NADP binding (GO:0050661),Molecular Function: NAD binding (GO:0051287);InterPro=NAD(P)-binding domain superfamily (IPR036291),6-phosphogluconate dehydrogenase-like%2C C-terminal domain superfamily (IPR008927),6-phosphogluconate dehydrogenase%2C domain 2 (IPR013328),3-hydroxyisobutyrate dehydrogenase-related (IPR015815),6-phosphogluconate dehydrogenase%2C NADP-binding (IPR006115),3-hydroxyisobutyrate dehydrogenase%2C NAD-binding domain (IPR029154),3-hydroxyisobutyrate dehydrogenase-related%2C conserved site (IPR002204);NIAS_FLcDNA=006-308-H04;Manual Curation=July 31%2C 2020;Literature_PMID=32727356,28855911;Oryzabase=16277;Expression=AK109435;TENOR=Os02t0562700-01;KEGG=Os02t0562700-01 (EC:1.1.1.79);Subcellular location=cytosol (GO:0005829)
Chr02	irgsp1_rep	five_prime_UTR	21344262	21344392	.	+	.	Parent=Os02t0562700-01
Chr02	irgsp1_rep	CDS	21344393	21344497	.	+	0	Parent=Os02t0562700-01
Chr02	irgsp1_rep	CDS	21344589	21344699	.	+	0	Parent=Os02t0562700-01
Chr02	irgsp1_rep	CDS	21344791	21344892	.	+	0	Parent=Os02t0562700-01
Chr02	irgsp1_rep	CDS	21346839	21346940	.	+	0	Parent=Os02t0562700-01
Chr02	irgsp1_rep	CDS	21347507	21347622	.	+	0	Parent=Os02t0562700-01
Chr02	irgsp1_rep	CDS	21347786	21347864	.	+	1	Parent=Os02t0562700-01
Chr02	irgsp1_rep	CDS	21347953	21348123	.	+	0	Parent=Os02t0562700-01
Chr02	irgsp1_rep	CDS	21348223	21348318	.	+	0	Parent=Os02t0562700-01
Chr02	irgsp1_rep	three_prime_UTR	21348319	21348525	.	+	.	Parent=Os02t0562700-01
Chr02	irgsp1_rep	mRNA	21344288	21348564	.	+	.	ID=Os02t0562700-02;Name=Os02t0562700-02;Locus_id=Os02g0562700;CGSNL Gene Symbol=GLYR1;CGSNL Gene Name=GLYOXYLATE/SUCCINIC SEMIALDEHYDE REDUCTASE 1;Oryzabase Gene Symbol Synonym(s)=OsGLYR1%2C OsGR1%2C GR1;Oryzabase Gene Name Synonym(s)=gamma hydroxybutyrate dehydrogenase%2C glyoxylate/succinic semialdehyde reductase 1%2C glyoxylate reductase 1;Note=Similar to Gamma hydroxybutyrate dehydrogenase (EC 1.1.1.61).;Transcript_evidence=AK071800 (DDBJ%2C Best hit),AK104168 (DDBJ%2C Best hit);ORF_evidence=NP_001148591.1 (RefSeq);GO=Biological Process: pentose-phosphate shunt (GO:0006098),Biological Process: valine metabolic process (GO:0006573),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity (GO:0004616),Molecular Function: 3-hydroxyisobutyrate dehydrogenase activity (GO:0008442),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: coenzyme binding (GO:0050662);InterPro=3-hydroxyisobutyrate dehydrogenase-related%2C conserved site (IPR002204),6-phosphogluconate dehydrogenase%2C NADP-binding (IPR006115),6-phosphogluconate dehydrogenase%2C C-terminal-like (IPR008927),Dehydrogenase%2C multihelical (IPR013328),3-hydroxyacid dehydrogenase/reductase (IPR015815),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023114G06,006-212-E09;Oryzabase=16277;TENOR=Os02t0562700-02
Chr02	irgsp1_rep	five_prime_UTR	21344288	21344392	.	+	.	Parent=Os02t0562700-02
Chr02	irgsp1_rep	CDS	21344393	21344497	.	+	0	Parent=Os02t0562700-02
Chr02	irgsp1_rep	CDS	21344589	21344699	.	+	0	Parent=Os02t0562700-02
Chr02	irgsp1_rep	CDS	21344791	21344892	.	+	0	Parent=Os02t0562700-02
Chr02	irgsp1_rep	CDS	21346839	21346940	.	+	0	Parent=Os02t0562700-02
Chr02	irgsp1_rep	CDS	21347507	21347622	.	+	0	Parent=Os02t0562700-02
Chr02	irgsp1_rep	CDS	21347786	21347864	.	+	1	Parent=Os02t0562700-02
Chr02	irgsp1_rep	CDS	21347953	21348123	.	+	0	Parent=Os02t0562700-02
Chr02	irgsp1_rep	CDS	21348223	21348318	.	+	0	Parent=Os02t0562700-02
Chr02	irgsp1_rep	three_prime_UTR	21348319	21348564	.	+	.	Parent=Os02t0562700-02
Chr02	irgsp1_rep	mRNA	21365479	21366789	.	+	.	ID=Os02t0563000-00;Name=Os02t0563000-00;Locus_id=Os02g0563000;Oryzabase Gene Symbol Synonym(s)=OsKMD3%2C OsFbox096%2C OsFbox96%2C Os_F0169;Oryzabase Gene Name Synonym(s)=KISS ME DEADLY3%2C KISS ME DEADLY 3%2C F-box protein 96;Note=Hypothetical conserved gene.;Transcript_evidence=BT083559 (DDBJ);ORF_evidence=Q6ZGB6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Kelch repeat type 1 (IPR006652),Galactose oxidase%2C beta-propeller (IPR015916),F-box domain%2C Skp2-like (IPR022364);Oryzabase=16705;TENOR=Os02t0563000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	21365479	21365613	.	+	.	Parent=Os02t0563000-00
Chr02	irgsp1_rep	CDS	21365614	21366789	.	+	0	Parent=Os02t0563000-00
Chr02	irgsp1_rep	mRNA	21396354	21399727	.	-	.	ID=Os02t0563800-01;Name=Os02t0563800-01;Locus_id=Os02g0563800;Oryzabase Gene Symbol Synonym(s)=OsFbox097%2C OsFbox97%2C Os_F0402;Oryzabase Gene Name Synonym(s)=F-box protein 97;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK121794 (DDBJ%2C Best hit);ORF_evidence=A2Y6M3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033095G22;Oryzabase=16890;Expression=AK121794;TENOR=Os02t0563800-01;KEGG=Os02t0563800-01
Chr02	irgsp1_rep	five_prime_UTR	21399170	21399727	.	-	.	Parent=Os02t0563800-01
Chr02	irgsp1_rep	CDS	21396518	21399169	.	-	0	Parent=Os02t0563800-01
Chr02	irgsp1_rep	three_prime_UTR	21396354	21396517	.	-	.	Parent=Os02t0563800-01
Chr02	irgsp1_rep	mRNA	21396413	21399192	.	-	.	ID=Os02t0563800-02;Name=Os02t0563800-02;Locus_id=Os02g0563800;Oryzabase Gene Symbol Synonym(s)=OsFbox097%2C OsFbox97%2C Os_F0402;Oryzabase Gene Name Synonym(s)=F-box protein 97;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK067547 (DDBJ%2C Best hit);ORF_evidence=A2Y6M3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013108A18;Oryzabase=16890;Expression=AK067547;TENOR=Os02t0563800-02;KEGG=Os02t0563800-02
Chr02	irgsp1_rep	five_prime_UTR	21399170	21399192	.	-	.	Parent=Os02t0563800-02
Chr02	irgsp1_rep	CDS	21396518	21399169	.	-	0	Parent=Os02t0563800-02
Chr02	irgsp1_rep	three_prime_UTR	21396413	21396517	.	-	.	Parent=Os02t0563800-02
Chr02	irgsp1_rep	mRNA	21410814	21413683	.	-	.	ID=Os02t0564000-01;Name=Os02t0564000-01;Locus_id=Os02g0564000;CGSNL Gene Symbol=GSTZ3;CGSNL Gene Name=ZETA GLUTATHIONE S-TRANSFERASE 3;Oryzabase Gene Symbol Synonym(s)=OsGSTZ3;Note=Similar to Glutathione S-transferase.;Transcript_evidence=AK073086 (DDBJ%2C Best hit);ORF_evidence=Q0GKV1 (UniProt);GO=Biological Process: aromatic amino acid family metabolic process (GO:0009072),Cellular Component: cytoplasm (GO:0005737),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Maleylacetoacetate isomerase (IPR005955),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=J033022J16;Oryzabase=9570;Expression=AK073086;TENOR=Os02t0564000-01;KEGG=Os02t0564000-01
Chr02	irgsp1_rep	five_prime_UTR	21413598	21413683	.	-	.	Parent=Os02t0564000-01
Chr02	irgsp1_rep	CDS	21413492	21413597	.	-	0	Parent=Os02t0564000-01
Chr02	irgsp1_rep	CDS	21413300	21413356	.	-	2	Parent=Os02t0564000-01
Chr02	irgsp1_rep	CDS	21412694	21412779	.	-	2	Parent=Os02t0564000-01
Chr02	irgsp1_rep	CDS	21412541	21412612	.	-	0	Parent=Os02t0564000-01
Chr02	irgsp1_rep	CDS	21412111	21412200	.	-	0	Parent=Os02t0564000-01
Chr02	irgsp1_rep	CDS	21411826	21411901	.	-	0	Parent=Os02t0564000-01
Chr02	irgsp1_rep	CDS	21411543	21411604	.	-	2	Parent=Os02t0564000-01
Chr02	irgsp1_rep	CDS	21411165	21411224	.	-	0	Parent=Os02t0564000-01
Chr02	irgsp1_rep	CDS	21410976	21411080	.	-	0	Parent=Os02t0564000-01
Chr02	irgsp1_rep	three_prime_UTR	21410814	21410975	.	-	.	Parent=Os02t0564000-01
Chr02	irgsp1_rep	mRNA	21413884	21417195	.	+	.	ID=Os02t0564100-01;Name=Os02t0564100-01;Locus_id=Os02g0564100;Note=Similar to EL3 protein.;Transcript_evidence=AK073526 (DDBJ%2C Best hit),AK105951 (DDBJ%2C Best hit);ORF_evidence=NP_001149904.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-type%2C conserved site (IPR019786),Zinc finger%2C PHD-finger (IPR019787),Protein of unknown function DUF3594 (IPR021998);NIAS_FLcDNA=J033046L10,001-205-D01;TENOR=Os02t0564100-01
Chr02	irgsp1_rep	five_prime_UTR	21413884	21413966	.	+	.	Parent=Os02t0564100-01
Chr02	irgsp1_rep	CDS	21413967	21414114	.	+	0	Parent=Os02t0564100-01
Chr02	irgsp1_rep	CDS	21414215	21414247	.	+	2	Parent=Os02t0564100-01
Chr02	irgsp1_rep	CDS	21415936	21416164	.	+	2	Parent=Os02t0564100-01
Chr02	irgsp1_rep	CDS	21416384	21416504	.	+	1	Parent=Os02t0564100-01
Chr02	irgsp1_rep	CDS	21416598	21416870	.	+	0	Parent=Os02t0564100-01
Chr02	irgsp1_rep	three_prime_UTR	21416871	21417195	.	+	.	Parent=Os02t0564100-01
Chr02	irgsp1_rep	mRNA	21414000	21414378	.	-	.	ID=Os02t0564150-00;Name=Os02t0564150-00;Locus_id=Os02g0564150;Note=Non-protein coding transcript.;Transcript_evidence=EU949871 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0564150-00
Chr02	irgsp1_rep	exon	21414000	21414378	.	-	.	Parent=Os02t0564150-00
Chr02	irgsp1_rep	mRNA	21418030	21420402	.	+	.	ID=Os02t0564200-01;Name=Os02t0564200-01;Locus_id=Os02g0564200;Note=Conserved hypothetical protein.;Transcript_evidence=AK072445 (DDBJ%2C Best hit);ORF_evidence=A2X661 (UniProt);NIAS_FLcDNA=J023110M11;Expression=AK072445;TENOR=Os02t0564200-01;KEGG=Os02t0564200-01
Chr02	irgsp1_rep	five_prime_UTR	21418030	21418092	.	+	.	Parent=Os02t0564200-01
Chr02	irgsp1_rep	CDS	21418093	21418293	.	+	0	Parent=Os02t0564200-01
Chr02	irgsp1_rep	three_prime_UTR	21418294	21420402	.	+	.	Parent=Os02t0564200-01
Chr02	irgsp1_rep	mRNA	21418045	21420037	.	+	.	ID=Os02t0564200-02;Name=Os02t0564200-02;Locus_id=Os02g0564200;Note=Conserved hypothetical protein.;Transcript_evidence=AK059007 (DDBJ%2C Best hit);ORF_evidence=A2X661 (UniProt);NIAS_FLcDNA=001-020-H07;Expression=AK059007;TENOR=Os02t0564200-02;KEGG=Os02t0564200-02
Chr02	irgsp1_rep	five_prime_UTR	21418045	21418092	.	+	.	Parent=Os02t0564200-02
Chr02	irgsp1_rep	CDS	21418093	21418293	.	+	0	Parent=Os02t0564200-02
Chr02	irgsp1_rep	three_prime_UTR	21418294	21418338	.	+	.	Parent=Os02t0564200-02
Chr02	irgsp1_rep	three_prime_UTR	21419852	21420037	.	+	.	Parent=Os02t0564200-02
Chr02	irgsp1_rep	mRNA	21420322	21422355	.	-	.	ID=Os02t0564300-01;Name=Os02t0564300-01;Locus_id=Os02g0564300;Note=Conserved hypothetical protein.;Transcript_evidence=AK242358 (DDBJ%2C Best hit);ORF_evidence=NP_001047159.1 (RefSeq);NIAS_FLcDNA=J080022K01;TENOR=Os02t0564300-01;KEGG=Os02t0564300-01
Chr02	irgsp1_rep	five_prime_UTR	21422287	21422355	.	-	.	Parent=Os02t0564300-01
Chr02	irgsp1_rep	CDS	21420394	21422286	.	-	0	Parent=Os02t0564300-01
Chr02	irgsp1_rep	three_prime_UTR	21420322	21420393	.	-	.	Parent=Os02t0564300-01
Chr02	irgsp1_rep	mRNA	21425672	21431619	.	+	.	ID=Os02t0564400-01;Name=Os02t0564400-01;Locus_id=Os02g0564400;Note=Similar to CLPX (Clp protease regulatory subunit X)%3B ATPase.;Transcript_evidence=AK243408 (DDBJ%2C Best hit);ORF_evidence=E5GBA0 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: unfolded protein binding (GO:0051082);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),Clp protease%2C ATP-binding subunit ClpX (IPR004487),ATPase%2C AAA-2 (IPR013093),Clp ATPase%2C C-terminal (IPR019489);NIAS_FLcDNA=J100065N04;TENOR=Os02t0564400-01;KEGG=Os02t0564400-01
Chr02	irgsp1_rep	five_prime_UTR	21425672	21425718	.	+	.	Parent=Os02t0564400-01
Chr02	irgsp1_rep	CDS	21425719	21426471	.	+	0	Parent=Os02t0564400-01
Chr02	irgsp1_rep	CDS	21427333	21427394	.	+	0	Parent=Os02t0564400-01
Chr02	irgsp1_rep	CDS	21427533	21427633	.	+	1	Parent=Os02t0564400-01
Chr02	irgsp1_rep	CDS	21427771	21427854	.	+	2	Parent=Os02t0564400-01
Chr02	irgsp1_rep	CDS	21428664	21428710	.	+	2	Parent=Os02t0564400-01
Chr02	irgsp1_rep	CDS	21428799	21428873	.	+	0	Parent=Os02t0564400-01
Chr02	irgsp1_rep	CDS	21428945	21429022	.	+	0	Parent=Os02t0564400-01
Chr02	irgsp1_rep	CDS	21429502	21429558	.	+	0	Parent=Os02t0564400-01
Chr02	irgsp1_rep	CDS	21429957	21430027	.	+	0	Parent=Os02t0564400-01
Chr02	irgsp1_rep	CDS	21430135	21430234	.	+	1	Parent=Os02t0564400-01
Chr02	irgsp1_rep	CDS	21430364	21430468	.	+	0	Parent=Os02t0564400-01
Chr02	irgsp1_rep	CDS	21430610	21430672	.	+	0	Parent=Os02t0564400-01
Chr02	irgsp1_rep	CDS	21430750	21430872	.	+	0	Parent=Os02t0564400-01
Chr02	irgsp1_rep	CDS	21430977	21431120	.	+	0	Parent=Os02t0564400-01
Chr02	irgsp1_rep	CDS	21431204	21431278	.	+	0	Parent=Os02t0564400-01
Chr02	irgsp1_rep	three_prime_UTR	21431279	21431619	.	+	.	Parent=Os02t0564400-01
Chr02	irgsp1_rep	mRNA	21432254	21434982	.	-	.	ID=Os02t0564500-01;Name=Os02t0564500-01;Locus_id=Os02g0564500;Note=SFT2-like family protein.;Transcript_evidence=AK103450 (DDBJ%2C Best hit);ORF_evidence=B6TQJ1 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: integral to membrane (GO:0016021);InterPro=Vesicle transport protein%2C Got1/SFT2-like (IPR007305),Vesicle transport protein%2C SFT2-like (IPR011691);NIAS_FLcDNA=J033129I06;Expression=AK103450;TENOR=Os02t0564500-01;KEGG=Os02t0564500-01
Chr02	irgsp1_rep	five_prime_UTR	21434792	21434982	.	-	.	Parent=Os02t0564500-01
Chr02	irgsp1_rep	CDS	21434660	21434791	.	-	0	Parent=Os02t0564500-01
Chr02	irgsp1_rep	CDS	21434456	21434509	.	-	0	Parent=Os02t0564500-01
Chr02	irgsp1_rep	CDS	21433612	21433685	.	-	0	Parent=Os02t0564500-01
Chr02	irgsp1_rep	CDS	21433070	21433187	.	-	1	Parent=Os02t0564500-01
Chr02	irgsp1_rep	CDS	21432914	21432972	.	-	0	Parent=Os02t0564500-01
Chr02	irgsp1_rep	CDS	21432529	21432607	.	-	1	Parent=Os02t0564500-01
Chr02	irgsp1_rep	three_prime_UTR	21432254	21432528	.	-	.	Parent=Os02t0564500-01
Chr02	irgsp1_rep	mRNA	21435187	21435986	.	+	.	ID=Os02t0564600-01;Name=Os02t0564600-01;Locus_id=Os02g0564600;CGSNL Gene Symbol=LEA10;CGSNL Gene Name=LATE EMBRYOGENESIS ABUNDANT PROTEIN 10;Oryzabase Gene Symbol Synonym(s)=OsLEA10;Oryzabase Gene Name Synonym(s)=late embryogenesis abundant protein 10;Note=Late embryogenesis abundant protein 3 family protein.;Transcript_evidence=AK318610 (DDBJ%2C Best hit);ORF_evidence=NP_001147317.1 (RefSeq);GO=Biological Process: response to stress (GO:0006950);InterPro=Late embryogenesis abundant protein%2C LEA-5 (IPR004926);NIAS_FLcDNA=J100080C16;Oryzabase=10178;TENOR=Os02t0564600-01;KEGG=Os02t0564600-01
Chr02	irgsp1_rep	five_prime_UTR	21435187	21435400	.	+	.	Parent=Os02t0564600-01
Chr02	irgsp1_rep	CDS	21435401	21435444	.	+	0	Parent=Os02t0564600-01
Chr02	irgsp1_rep	CDS	21435568	21435799	.	+	1	Parent=Os02t0564600-01
Chr02	irgsp1_rep	three_prime_UTR	21435800	21435986	.	+	.	Parent=Os02t0564600-01
Chr02	irgsp1_rep	mRNA	21436299	21440664	.	-	.	ID=Os02t0564700-01;Name=Os02t0564700-01;Locus_id=Os02g0564700;Oryzabase Gene Symbol Synonym(s)=OsbHLH097;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 097;Note=Similar to BHLH transcription factor.;Transcript_evidence=AK241924 (DDBJ%2C Best hit);ORF_evidence=B4FBV5 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J075076G04;Oryzabase=15382;TENOR=Os02t0564700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	21440439	21440664	.	-	.	Parent=Os02t0564700-01
Chr02	irgsp1_rep	five_prime_UTR	21439354	21439374	.	-	.	Parent=Os02t0564700-01
Chr02	irgsp1_rep	CDS	21438718	21439353	.	-	0	Parent=Os02t0564700-01
Chr02	irgsp1_rep	CDS	21438184	21438279	.	-	0	Parent=Os02t0564700-01
Chr02	irgsp1_rep	CDS	21437868	21437957	.	-	0	Parent=Os02t0564700-01
Chr02	irgsp1_rep	CDS	21437588	21437755	.	-	0	Parent=Os02t0564700-01
Chr02	irgsp1_rep	CDS	21437402	21437467	.	-	0	Parent=Os02t0564700-01
Chr02	irgsp1_rep	CDS	21437228	21437293	.	-	0	Parent=Os02t0564700-01
Chr02	irgsp1_rep	CDS	21437059	21437127	.	-	0	Parent=Os02t0564700-01
Chr02	irgsp1_rep	CDS	21436548	21436931	.	-	0	Parent=Os02t0564700-01
Chr02	irgsp1_rep	three_prime_UTR	21436299	21436547	.	-	.	Parent=Os02t0564700-01
Chr02	irgsp1_rep	mRNA	21449650	21451339	.	-	.	ID=Os02t0565000-01;Name=Os02t0565000-01;Locus_id=Os02g0565000;CGSNL Gene Symbol=MSL14;CGSNL Gene Name=MYB/SANT-LIKE 14;Oryzabase Gene Symbol Synonym(s)=OsMSL14;Oryzabase Gene Name Synonym(s)=Myb/SANT-LIKE 14;Note=Homeodomain-like containing protein.;Transcript_evidence=AK120665 (DDBJ%2C Best hit);ORF_evidence=NP_001151900.1 (RefSeq);NIAS_FLcDNA=J013159K02;Oryzabase=22955;Expression=AK120665;TENOR=Os02t0565000-01;KEGG=Os02t0565000-01
Chr02	irgsp1_rep	five_prime_UTR	21451257	21451339	.	-	.	Parent=Os02t0565000-01
Chr02	irgsp1_rep	CDS	21449997	21451256	.	-	0	Parent=Os02t0565000-01
Chr02	irgsp1_rep	three_prime_UTR	21449650	21449996	.	-	.	Parent=Os02t0565000-01
Chr02	irgsp1_rep	mRNA	21453132	21455758	.	+	.	ID=Os02t0565100-01;Name=Os02t0565100-01;Locus_id=Os02g0565100;Note=Nucleoside diphosphate kinase%2C core domain containing protein.;Transcript_evidence=AK106382 (DDBJ%2C Best hit);ORF_evidence=B8ADZ7 (UniProt);GO=Biological Process: nucleoside diphosphate phosphorylation (GO:0006165),Biological Process: GTP biosynthetic process (GO:0006183),Biological Process: UTP biosynthetic process (GO:0006228),Biological Process: CTP biosynthetic process (GO:0006241),Molecular Function: nucleoside diphosphate kinase activity (GO:0004550),Molecular Function: ATP binding (GO:0005524);InterPro=Nucleoside diphosphate kinase (IPR001564),Nucleoside diphosphate kinase%2C active site (IPR023005);NIAS_FLcDNA=002-102-E02;Expression=AK106382;TENOR=Os02t0565100-01;KEGG=Os02t0565100-01 (EC:2.7.4.6)
Chr02	irgsp1_rep	five_prime_UTR	21453132	21453191	.	+	.	Parent=Os02t0565100-01
Chr02	irgsp1_rep	CDS	21453192	21453268	.	+	0	Parent=Os02t0565100-01
Chr02	irgsp1_rep	CDS	21453708	21453932	.	+	1	Parent=Os02t0565100-01
Chr02	irgsp1_rep	CDS	21454794	21454901	.	+	1	Parent=Os02t0565100-01
Chr02	irgsp1_rep	CDS	21455122	21455231	.	+	1	Parent=Os02t0565100-01
Chr02	irgsp1_rep	CDS	21455306	21455331	.	+	2	Parent=Os02t0565100-01
Chr02	irgsp1_rep	three_prime_UTR	21455332	21455758	.	+	.	Parent=Os02t0565100-01
Chr02	irgsp1_rep	mRNA	21457944	21458344	.	-	.	ID=Os02t0565150-00;Name=Os02t0565150-00;Locus_id=Os02g0565150;Note=Conserved hypothetical protein.;Transcript_evidence=EU968623 (DDBJ);ORF_evidence=NP_001173029.1 (RefSeq);TENOR=Os02t0565150-00;KEGG=Os02t0565150-00
Chr02	irgsp1_rep	CDS	21457976	21458344	.	-	0	Parent=Os02t0565150-00
Chr02	irgsp1_rep	three_prime_UTR	21457944	21457975	.	-	.	Parent=Os02t0565150-00
Chr02	irgsp1_rep	mRNA	21462278	21464508	.	-	.	ID=Os02t0565200-01;Name=Os02t0565200-01;Locus_id=Os02g0565200;Note=Microsomal signal peptidase 25 kDa subunit family protein.;Transcript_evidence=AK102047 (DDBJ%2C Best hit);ORF_evidence=Q01J29 (UniProt);GO=Biological Process: signal peptide processing (GO:0006465),Cellular Component: signal peptidase complex (GO:0005787),Cellular Component: integral to membrane (GO:0016021),Molecular Function: peptidase activity (GO:0008233);InterPro=Signal peptidase complex subunit 2 (IPR009582);NIAS_FLcDNA=J033082A02;Expression=AK102047;TENOR=Os02t0565200-01;KEGG=Os02t0565200-01
Chr02	irgsp1_rep	five_prime_UTR	21464454	21464508	.	-	.	Parent=Os02t0565200-01
Chr02	irgsp1_rep	CDS	21464349	21464453	.	-	0	Parent=Os02t0565200-01
Chr02	irgsp1_rep	CDS	21463989	21464222	.	-	0	Parent=Os02t0565200-01
Chr02	irgsp1_rep	CDS	21463054	21463196	.	-	0	Parent=Os02t0565200-01
Chr02	irgsp1_rep	CDS	21462486	21462579	.	-	1	Parent=Os02t0565200-01
Chr02	irgsp1_rep	three_prime_UTR	21462278	21462485	.	-	.	Parent=Os02t0565200-01
Chr02	irgsp1_rep	mRNA	21462363	21464473	.	-	.	ID=Os02t0565200-02;Name=Os02t0565200-02;Locus_id=Os02g0565200;Note=Microsomal signal peptidase 25 kDa subunit family protein.;Transcript_evidence=AK061593 (DDBJ%2C Best hit);ORF_evidence=Q01J29 (UniProt);GO=Biological Process: signal peptide processing (GO:0006465),Cellular Component: signal peptidase complex (GO:0005787),Cellular Component: integral to membrane (GO:0016021),Molecular Function: peptidase activity (GO:0008233);InterPro=Signal peptidase complex subunit 2 (IPR009582);NIAS_FLcDNA=001-023-A06;Expression=AK061593;TENOR=Os02t0565200-02;KEGG=Os02t0565200-02
Chr02	irgsp1_rep	five_prime_UTR	21464454	21464473	.	-	.	Parent=Os02t0565200-02
Chr02	irgsp1_rep	CDS	21464349	21464453	.	-	0	Parent=Os02t0565200-02
Chr02	irgsp1_rep	CDS	21463989	21464222	.	-	0	Parent=Os02t0565200-02
Chr02	irgsp1_rep	CDS	21463054	21463196	.	-	0	Parent=Os02t0565200-02
Chr02	irgsp1_rep	CDS	21462486	21462579	.	-	1	Parent=Os02t0565200-02
Chr02	irgsp1_rep	three_prime_UTR	21462363	21462485	.	-	.	Parent=Os02t0565200-02
Chr02	irgsp1_rep	mRNA	21468284	21469135	.	-	.	ID=Os02t0565300-00;Name=Os02t0565300-00;Locus_id=Os02g0565300;Note=Hypothetical conserved gene.;Transcript_evidence=EU976840 (DDBJ);ORF_evidence=Q6Z7E2 (UniProt);TENOR=Os02t0565300-00;KEGG=Os02t0565300-00
Chr02	irgsp1_rep	CDS	21468284	21469135	.	-	0	Parent=Os02t0565300-00
Chr02	irgsp1_rep	mRNA	21471731	21473822	.	+	.	ID=Os02t0565400-01;Name=Os02t0565400-01;Locus_id=Os02g0565400;RAP-DB Gene Symbol Synonym(s)=WSL4;RAP-DB Gene Name Synonym(s)=WHITE STRIPE LEAF4;CGSNL Gene Symbol=WSL4;CGSNL Gene Name=WHITE STRIPE LEAF 4;Oryzabase Gene Symbol Synonym(s)=OsSTA65%2C STA65;Oryzabase Gene Name Synonym(s)=white stripe leaf4;Note=P-family pentatricopeptide repeat (PPR) protein%2C Chloroplast biogenesis during early leaf development%2C Chloroplast RNA group II intron splicing;Transcript_evidence=AK068847;ORF_evidence=Q6Z7E0;InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J013162J12;Manual Curation=July 28%2C 2017;Literature_PMID=28694820;Oryzabase=19367;Expression=AK068847;TENOR=Os02t0565400-01;KEGG=Os02t0565400-01;Subcellular location=chloroplast nucleoid (GO:0042644)
Chr02	irgsp1_rep	five_prime_UTR	21471731	21471756	.	+	.	Parent=Os02t0565400-01
Chr02	irgsp1_rep	CDS	21471757	21473421	.	+	0	Parent=Os02t0565400-01
Chr02	irgsp1_rep	three_prime_UTR	21473422	21473822	.	+	.	Parent=Os02t0565400-01
Chr02	irgsp1_rep	mRNA	21472360	21475633	.	+	.	ID=Os02t0565400-02;Name=Os02t0565400-02;Locus_id=Os02g0565400;CGSNL Gene Symbol=WSL4;CGSNL Gene Name=WHITE STRIPE LEAF 4;Oryzabase Gene Symbol Synonym(s)=OsSTA65%2C STA65;Oryzabase Gene Name Synonym(s)=white stripe leaf4;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK073055 (DDBJ%2C Best hit);ORF_evidence=A3A845 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033004L05;Manual Curation=July 28%2C 2017;Oryzabase=19367;Expression=AK073055;TENOR=Os02t0565400-02;KEGG=Os02t0565400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	21472360	21472392	.	+	.	Parent=Os02t0565400-02
Chr02	irgsp1_rep	CDS	21472393	21473421	.	+	0	Parent=Os02t0565400-02
Chr02	irgsp1_rep	three_prime_UTR	21473422	21473554	.	+	.	Parent=Os02t0565400-02
Chr02	irgsp1_rep	three_prime_UTR	21474424	21474477	.	+	.	Parent=Os02t0565400-02
Chr02	irgsp1_rep	three_prime_UTR	21475246	21475633	.	+	.	Parent=Os02t0565400-02
Chr02	irgsp1_rep	mRNA	21474733	21477629	.	-	.	ID=Os02t0565500-01;Name=Os02t0565500-01;Locus_id=Os02g0565500;CGSNL Gene Symbol=RLCK74;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 74;Oryzabase Gene Symbol Synonym(s)=OsRLCK74;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 74;Note=Similar to Pto kinase interactor 1.;Transcript_evidence=AK072522 (DDBJ%2C Best hit);ORF_evidence=Q709M1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Tyrosine-protein kinase%2C active site (IPR008266),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J023132N04;Oryzabase=18789;Expression=AK072522;TENOR=Os02t0565500-01;KEGG=Os02t0565500-01
Chr02	irgsp1_rep	five_prime_UTR	21477460	21477629	.	-	.	Parent=Os02t0565500-01
Chr02	irgsp1_rep	five_prime_UTR	21477114	21477254	.	-	.	Parent=Os02t0565500-01
Chr02	irgsp1_rep	CDS	21477029	21477113	.	-	0	Parent=Os02t0565500-01
Chr02	irgsp1_rep	CDS	21476655	21476908	.	-	2	Parent=Os02t0565500-01
Chr02	irgsp1_rep	CDS	21476436	21476562	.	-	0	Parent=Os02t0565500-01
Chr02	irgsp1_rep	CDS	21475874	21476147	.	-	2	Parent=Os02t0565500-01
Chr02	irgsp1_rep	CDS	21475632	21475764	.	-	1	Parent=Os02t0565500-01
Chr02	irgsp1_rep	CDS	21475437	21475523	.	-	0	Parent=Os02t0565500-01
Chr02	irgsp1_rep	CDS	21475223	21475354	.	-	0	Parent=Os02t0565500-01
Chr02	irgsp1_rep	three_prime_UTR	21474733	21475222	.	-	.	Parent=Os02t0565500-01
Chr02	irgsp1_rep	mRNA	21487610	21489894	.	-	.	ID=Os02t0565600-01;Name=Os02t0565600-01;Locus_id=Os02g0565600;CGSNL Gene Symbol=HOX7;CGSNL Gene Name=HOMEOBOX GENE 7;Oryzabase Gene Symbol Synonym(s)=Oshox7%2C OsHox7;Oryzabase Gene Name Synonym(s)=rice homeobox gene 7%2C Homeobox-leucine zipper protein HOX7%2C Homeodomain transcription factor HOX7%2C HD-ZIP protein HOX7;Note=Similar to Homeodomain leucine zipper protein (Fragment).;Transcript_evidence=AK064118 (DDBJ%2C Best hit);ORF_evidence=Q0E0A6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),Leucine zipper%2C homeobox-associated (IPR003106),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Homeobox%2C conserved site (IPR017970);NIAS_FLcDNA=002-102-B08;Oryzabase=6158;Expression=AK064118;TENOR=Os02t0565600-01;KEGG=Os02t0565600-01
Chr02	irgsp1_rep	five_prime_UTR	21489872	21489894	.	-	.	Parent=Os02t0565600-01
Chr02	irgsp1_rep	CDS	21489595	21489871	.	-	0	Parent=Os02t0565600-01
Chr02	irgsp1_rep	CDS	21489194	21489447	.	-	2	Parent=Os02t0565600-01
Chr02	irgsp1_rep	CDS	21488500	21488579	.	-	0	Parent=Os02t0565600-01
Chr02	irgsp1_rep	CDS	21487895	21488333	.	-	1	Parent=Os02t0565600-01
Chr02	irgsp1_rep	three_prime_UTR	21487610	21487894	.	-	.	Parent=Os02t0565600-01
Chr02	irgsp1_rep	mRNA	21517104	21517562	.	-	.	ID=Os02t0566000-01;Name=Os02t0566000-01;Locus_id=Os02g0566000;Note=Similar to stem-specific protein TSJT1.;Transcript_evidence=AK059295 (DDBJ%2C Best hit);ORF_evidence=NP_001150359.1 (RefSeq);NIAS_FLcDNA=001-025-E09;TENOR=Os02t0566000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	21517334	21517562	.	-	.	Parent=Os02t0566000-01
Chr02	irgsp1_rep	CDS	21517121	21517333	.	-	0	Parent=Os02t0566000-01
Chr02	irgsp1_rep	three_prime_UTR	21517104	21517120	.	-	.	Parent=Os02t0566000-01
Chr02	irgsp1_rep	mRNA	21518767	21519704	.	+	.	ID=Os02t0566300-01;Name=Os02t0566300-01;Locus_id=Os02g0566300;Note=Conserved hypothetical protein.;Transcript_evidence=AK108517 (DDBJ%2C Best hit);ORF_evidence=Q6Z243 (UniProt);NIAS_FLcDNA=002-144-A11;TENOR=Os02t0566300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	21518767	21518790	.	+	.	Parent=Os02t0566300-01
Chr02	irgsp1_rep	CDS	21518791	21519156	.	+	0	Parent=Os02t0566300-01
Chr02	irgsp1_rep	three_prime_UTR	21519157	21519704	.	+	.	Parent=Os02t0566300-01
Chr02	irgsp1_rep	mRNA	21519647	21523549	.	+	.	ID=Os02t0566300-02;Name=Os02t0566300-02;Locus_id=Os02g0566300;Note=Retrotransposon gag protein domain containing protein.;Transcript_evidence=AK073899 (DDBJ%2C Best hit);ORF_evidence=longestORF;InterPro=Retrotransposon gag protein (IPR005162),Retroviral aspartyl protease (IPR013242),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J033072H18;TENOR=Os02t0566300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	21519647	21519796	.	+	.	Parent=Os02t0566300-02
Chr02	irgsp1_rep	CDS	21519797	21520292	.	+	0	Parent=Os02t0566300-02
Chr02	irgsp1_rep	CDS	21520587	21521698	.	+	2	Parent=Os02t0566300-02
Chr02	irgsp1_rep	three_prime_UTR	21521699	21523549	.	+	.	Parent=Os02t0566300-02
Chr02	irgsp1_rep	mRNA	21519652	21522734	.	+	.	ID=Os02t0566300-03;Name=Os02t0566300-03;Locus_id=Os02g0566300;Note=Peptidase aspartic%2C catalytic domain containing protein.;Transcript_evidence=AK066077 (DDBJ%2C Best hit);ORF_evidence=B7EMV3 (UniProt);InterPro=Retrotransposon gag protein (IPR005162),Retroviral aspartyl protease (IPR013242),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J013051F05;Expression=AK066077;TENOR=Os02t0566300-03;KEGG=Os02t0566300-03
Chr02	irgsp1_rep	five_prime_UTR	21519652	21519796	.	+	.	Parent=Os02t0566300-03
Chr02	irgsp1_rep	CDS	21519797	21521698	.	+	0	Parent=Os02t0566300-03
Chr02	irgsp1_rep	three_prime_UTR	21521699	21522734	.	+	.	Parent=Os02t0566300-03
Chr02	irgsp1_rep	mRNA	21525890	21528856	.	+	.	ID=Os02t0566400-01;Name=Os02t0566400-01;Locus_id=Os02g0566400;Note=Similar to OSIGBa0152K17.7 protein.;Transcript_evidence=AK101019 (DDBJ%2C Best hit);ORF_evidence=Q01J80 (UniProt);InterPro=Protein of unknown function DUF3537 (IPR021924);NIAS_FLcDNA=J023149J24;Expression=AK101019;TENOR=Os02t0566400-01;KEGG=Os02t0566400-01
Chr02	irgsp1_rep	five_prime_UTR	21525890	21525923	.	+	.	Parent=Os02t0566400-01
Chr02	irgsp1_rep	CDS	21525924	21526799	.	+	0	Parent=Os02t0566400-01
Chr02	irgsp1_rep	CDS	21527938	21528274	.	+	0	Parent=Os02t0566400-01
Chr02	irgsp1_rep	CDS	21528402	21528538	.	+	2	Parent=Os02t0566400-01
Chr02	irgsp1_rep	three_prime_UTR	21528539	21528856	.	+	.	Parent=Os02t0566400-01
Chr02	irgsp1_rep	mRNA	21525910	21528573	.	-	.	ID=Os02t0566450-00;Name=Os02t0566450-00;Locus_id=Os02g0566450;Note=Hypothetical protein.;Transcript_evidence=tplb0026b15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0566450-00
Chr02	irgsp1_rep	five_prime_UTR	21528532	21528573	.	-	.	Parent=Os02t0566450-00
Chr02	irgsp1_rep	CDS	21528406	21528531	.	-	0	Parent=Os02t0566450-00
Chr02	irgsp1_rep	CDS	21528135	21528281	.	-	0	Parent=Os02t0566450-00
Chr02	irgsp1_rep	three_prime_UTR	21527927	21528134	.	-	.	Parent=Os02t0566450-00
Chr02	irgsp1_rep	three_prime_UTR	21525910	21526793	.	-	.	Parent=Os02t0566450-00
Chr02	irgsp1_rep	mRNA	21529602	21532760	.	-	.	ID=Os02t0566500-01;Name=Os02t0566500-01;Locus_id=Os02g0566500;Oryzabase Gene Name Synonym(s)=DUF1644 family protein;Note=Protein of unknown function DUF1644 family protein.;Transcript_evidence=AK071355 (DDBJ%2C Best hit),AK120966 (DDBJ%2C Best hit);ORF_evidence=Q01J79 (UniProt);InterPro=Protein of unknown function DUF1644 (IPR012866);NIAS_FLcDNA=J023091H20,J023040F07;Oryzabase=19985;Expression=AK071355;TENOR=Os02t0566500-01;KEGG=Os02t0566500-01
Chr02	irgsp1_rep	five_prime_UTR	21532640	21532760	.	-	.	Parent=Os02t0566500-01
Chr02	irgsp1_rep	five_prime_UTR	21531227	21531252	.	-	.	Parent=Os02t0566500-01
Chr02	irgsp1_rep	CDS	21530138	21531226	.	-	0	Parent=Os02t0566500-01
Chr02	irgsp1_rep	three_prime_UTR	21529602	21530137	.	-	.	Parent=Os02t0566500-01
Chr02	irgsp1_rep	mRNA	21543610	21548839	.	+	.	ID=Os02t0566700-01;Name=Os02t0566700-01;Locus_id=Os02g0566700;Note=Conserved hypothetical protein.;Transcript_evidence=AK102754 (DDBJ%2C Best hit);ORF_evidence=A2X684 (UniProt);NIAS_FLcDNA=J033106P12;Expression=AK102754;TENOR=Os02t0566700-01;KEGG=Os02t0566700-01
Chr02	irgsp1_rep	five_prime_UTR	21543610	21544194	.	+	.	Parent=Os02t0566700-01
Chr02	irgsp1_rep	CDS	21544195	21544303	.	+	0	Parent=Os02t0566700-01
Chr02	irgsp1_rep	CDS	21545660	21546315	.	+	2	Parent=Os02t0566700-01
Chr02	irgsp1_rep	CDS	21546400	21546486	.	+	0	Parent=Os02t0566700-01
Chr02	irgsp1_rep	CDS	21547094	21548068	.	+	0	Parent=Os02t0566700-01
Chr02	irgsp1_rep	CDS	21548247	21548393	.	+	0	Parent=Os02t0566700-01
Chr02	irgsp1_rep	three_prime_UTR	21548394	21548839	.	+	.	Parent=Os02t0566700-01
Chr02	irgsp1_rep	mRNA	21544153	21548063	.	-	.	ID=Os02t0566750-00;Name=Os02t0566750-00;Locus_id=Os02g0566750;Note=Hypothetical protein.;Transcript_evidence=tplb0058f15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0566750-00
Chr02	irgsp1_rep	five_prime_UTR	21547860	21548063	.	-	.	Parent=Os02t0566750-00
Chr02	irgsp1_rep	CDS	21547566	21547859	.	-	0	Parent=Os02t0566750-00
Chr02	irgsp1_rep	three_prime_UTR	21547099	21547565	.	-	.	Parent=Os02t0566750-00
Chr02	irgsp1_rep	three_prime_UTR	21546398	21546502	.	-	.	Parent=Os02t0566750-00
Chr02	irgsp1_rep	three_prime_UTR	21545628	21546310	.	-	.	Parent=Os02t0566750-00
Chr02	irgsp1_rep	three_prime_UTR	21544153	21544271	.	-	.	Parent=Os02t0566750-00
Chr02	irgsp1_rep	mRNA	21549807	21554990	.	-	.	ID=Os02t0566800-01;Name=Os02t0566800-01;Locus_id=Os02g0566800;Note=Similar to Avr9 elicitor response protein.;Transcript_evidence=AK242922 (DDBJ%2C Best hit);ORF_evidence=B6TWR8 (UniProt);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Glycosyl transferase%2C family 31 (IPR002659);NIAS_FLcDNA=J090084P13;TENOR=Os02t0566800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	21554261	21554990	.	-	.	Parent=Os02t0566800-01
Chr02	irgsp1_rep	CDS	21554184	21554260	.	-	0	Parent=Os02t0566800-01
Chr02	irgsp1_rep	CDS	21553317	21553416	.	-	1	Parent=Os02t0566800-01
Chr02	irgsp1_rep	CDS	21553164	21553222	.	-	0	Parent=Os02t0566800-01
Chr02	irgsp1_rep	CDS	21552857	21553059	.	-	1	Parent=Os02t0566800-01
Chr02	irgsp1_rep	CDS	21552140	21552203	.	-	2	Parent=Os02t0566800-01
Chr02	irgsp1_rep	CDS	21551421	21551493	.	-	1	Parent=Os02t0566800-01
Chr02	irgsp1_rep	CDS	21551209	21551329	.	-	0	Parent=Os02t0566800-01
Chr02	irgsp1_rep	CDS	21551040	21551127	.	-	2	Parent=Os02t0566800-01
Chr02	irgsp1_rep	CDS	21550829	21550954	.	-	1	Parent=Os02t0566800-01
Chr02	irgsp1_rep	CDS	21550643	21550752	.	-	1	Parent=Os02t0566800-01
Chr02	irgsp1_rep	CDS	21550405	21550553	.	-	2	Parent=Os02t0566800-01
Chr02	irgsp1_rep	three_prime_UTR	21549807	21550404	.	-	.	Parent=Os02t0566800-01
Chr02	irgsp1_rep	mRNA	21558864	21560751	.	-	.	ID=Os02t0566900-01;Name=Os02t0566900-01;Locus_id=Os02g0566900;Note=Uncharacterised protein family UPF0220 domain containing protein.;Transcript_evidence=AK068953 (DDBJ%2C Best hit);ORF_evidence=NP_001152223.1 (RefSeq);InterPro=Uncharacterised protein family UPF0220 (IPR007919);NIAS_FLcDNA=J023003M06;Expression=AK068953;TENOR=Os02t0566900-01;KEGG=Os02t0566900-01
Chr02	irgsp1_rep	five_prime_UTR	21560683	21560751	.	-	.	Parent=Os02t0566900-01
Chr02	irgsp1_rep	CDS	21560541	21560682	.	-	0	Parent=Os02t0566900-01
Chr02	irgsp1_rep	CDS	21560335	21560431	.	-	2	Parent=Os02t0566900-01
Chr02	irgsp1_rep	CDS	21559224	21559376	.	-	1	Parent=Os02t0566900-01
Chr02	irgsp1_rep	CDS	21559097	21559133	.	-	1	Parent=Os02t0566900-01
Chr02	irgsp1_rep	three_prime_UTR	21558864	21559096	.	-	.	Parent=Os02t0566900-01
Chr02	irgsp1_rep	mRNA	21561848	21563264	.	-	.	ID=Os02t0567000-01;Name=Os02t0567000-01;Locus_id=Os02g0567000;Note=Conserved hypothetical protein.;Transcript_evidence=AK068282 (DDBJ%2C Best hit);ORF_evidence=B8AEC4 (UniProt);NIAS_FLcDNA=J013142A16;Expression=AK068282;TENOR=Os02t0567000-01;KEGG=Os02t0567000-01
Chr02	irgsp1_rep	five_prime_UTR	21563252	21563264	.	-	.	Parent=Os02t0567000-01
Chr02	irgsp1_rep	CDS	21563081	21563251	.	-	0	Parent=Os02t0567000-01
Chr02	irgsp1_rep	CDS	21562443	21562511	.	-	0	Parent=Os02t0567000-01
Chr02	irgsp1_rep	CDS	21562144	21562344	.	-	0	Parent=Os02t0567000-01
Chr02	irgsp1_rep	three_prime_UTR	21561848	21562143	.	-	.	Parent=Os02t0567000-01
Chr02	irgsp1_rep	mRNA	21563496	21566565	.	-	.	ID=Os02t0567100-01;Name=Os02t0567100-01;Locus_id=Os02g0567100;Note=Thioredoxin domain 2 containing protein.;Transcript_evidence=AK061487 (DDBJ%2C Best hit),AK066393 (DDBJ%2C Best hit);ORF_evidence=NP_001151688.1 (RefSeq);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Thioredoxin (IPR005746),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766);NIAS_FLcDNA=006-309-A08,J013061M13;Expression=AK061487;TENOR=Os02t0567100-01;KEGG=Os02t0567100-01
Chr02	irgsp1_rep	five_prime_UTR	21566560	21566565	.	-	.	Parent=Os02t0567100-01
Chr02	irgsp1_rep	CDS	21566119	21566559	.	-	0	Parent=Os02t0567100-01
Chr02	irgsp1_rep	CDS	21565909	21565962	.	-	0	Parent=Os02t0567100-01
Chr02	irgsp1_rep	CDS	21565659	21565780	.	-	0	Parent=Os02t0567100-01
Chr02	irgsp1_rep	CDS	21563734	21563761	.	-	1	Parent=Os02t0567100-01
Chr02	irgsp1_rep	three_prime_UTR	21563496	21563733	.	-	.	Parent=Os02t0567100-01
Chr02	irgsp1_rep	mRNA	21569288	21574149	.	-	.	ID=Os02t0567200-01;Name=Os02t0567200-01;Locus_id=Os02g0567200;Oryzabase Gene Symbol Synonym(s)=OsPP2C15%2C PP2C15%2C OsPP25;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C15%2C protein phosphatase 2C 15%2C protein phosphatase 25;Note=Protein phosphatase 2C domain containing protein.;Transcript_evidence=AK069840 (DDBJ%2C Best hit);ORF_evidence=NP_001151313.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J023034F02;Oryzabase=17891;Expression=AK069840;TENOR=Os02t0567200-01;KEGG=Os02t0567200-01
Chr02	irgsp1_rep	five_prime_UTR	21574002	21574149	.	-	.	Parent=Os02t0567200-01
Chr02	irgsp1_rep	CDS	21573771	21574001	.	-	0	Parent=Os02t0567200-01
Chr02	irgsp1_rep	CDS	21573197	21573368	.	-	0	Parent=Os02t0567200-01
Chr02	irgsp1_rep	CDS	21572671	21572821	.	-	2	Parent=Os02t0567200-01
Chr02	irgsp1_rep	CDS	21572517	21572580	.	-	1	Parent=Os02t0567200-01
Chr02	irgsp1_rep	CDS	21571698	21571805	.	-	0	Parent=Os02t0567200-01
Chr02	irgsp1_rep	CDS	21571048	21571173	.	-	0	Parent=Os02t0567200-01
Chr02	irgsp1_rep	CDS	21570734	21570972	.	-	0	Parent=Os02t0567200-01
Chr02	irgsp1_rep	CDS	21570071	21570273	.	-	1	Parent=Os02t0567200-01
Chr02	irgsp1_rep	CDS	21569962	21569996	.	-	2	Parent=Os02t0567200-01
Chr02	irgsp1_rep	three_prime_UTR	21569288	21569961	.	-	.	Parent=Os02t0567200-01
Chr02	irgsp1_rep	mRNA	21569347	21574158	.	+	.	ID=Os02t0567450-00;Name=Os02t0567450-00;Locus_id=Os02g0567450;Note=Hypothetical gene.;Transcript_evidence=BT085317 (DDBJ);ORF_evidence=GeneMark;TENOR=Os02t0567450-00;KEGG=Os02t0567450-00
Chr02	irgsp1_rep	five_prime_UTR	21569347	21569767	.	+	.	Parent=Os02t0567450-00
Chr02	irgsp1_rep	CDS	21569768	21569979	.	+	0	Parent=Os02t0567450-00
Chr02	irgsp1_rep	CDS	21570056	21570068	.	+	1	Parent=Os02t0567450-00
Chr02	irgsp1_rep	three_prime_UTR	21570069	21570257	.	+	.	Parent=Os02t0567450-00
Chr02	irgsp1_rep	three_prime_UTR	21570719	21570959	.	+	.	Parent=Os02t0567450-00
Chr02	irgsp1_rep	three_prime_UTR	21571036	21571165	.	+	.	Parent=Os02t0567450-00
Chr02	irgsp1_rep	three_prime_UTR	21571691	21571811	.	+	.	Parent=Os02t0567450-00
Chr02	irgsp1_rep	three_prime_UTR	21572522	21572565	.	+	.	Parent=Os02t0567450-00
Chr02	irgsp1_rep	three_prime_UTR	21572651	21572802	.	+	.	Parent=Os02t0567450-00
Chr02	irgsp1_rep	three_prime_UTR	21573178	21573389	.	+	.	Parent=Os02t0567450-00
Chr02	irgsp1_rep	three_prime_UTR	21573787	21574158	.	+	.	Parent=Os02t0567450-00
Chr02	irgsp1_rep	mRNA	21587767	21589017	.	+	.	ID=Os02t0567800-01;Name=Os02t0567800-01;Locus_id=Os02g0567800;Note=Alpha/beta hydrolase fold-3 domain containing protein.;Transcript_evidence=AK105793 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Lipase%2C GDXG%2C active site (IPR002168),Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=001-202-H09;Expression=AK105793;TENOR=Os02t0567800-01;KEGG=Os02t0567800-01
Chr02	irgsp1_rep	five_prime_UTR	21587767	21587895	.	+	.	Parent=Os02t0567800-01
Chr02	irgsp1_rep	CDS	21587896	21588858	.	+	0	Parent=Os02t0567800-01
Chr02	irgsp1_rep	three_prime_UTR	21588859	21589017	.	+	.	Parent=Os02t0567800-01
Chr02	irgsp1_rep	mRNA	21596661	21600451	.	-	.	ID=Os02t0567850-01;Name=Os02t0567850-01;Locus_id=Os02g0567850;Note=Hypothetical gene.;Transcript_evidence=AK288610 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090053I12;TENOR=Os02t0567850-01;KEGG=Os02t0567850-01
Chr02	irgsp1_rep	five_prime_UTR	21597176	21600451	.	-	.	Parent=Os02t0567850-01
Chr02	irgsp1_rep	CDS	21596729	21597175	.	-	0	Parent=Os02t0567850-01
Chr02	irgsp1_rep	three_prime_UTR	21596661	21596728	.	-	.	Parent=Os02t0567850-01
Chr02	irgsp1_rep	mRNA	21598138	21602376	.	+	.	ID=Os02t0567900-01;Name=Os02t0567900-01;Locus_id=Os02g0567900;Note=Similar to H0818E04.14 protein.;Transcript_evidence=AK060161 (DDBJ%2C Best hit);ORF_evidence=Q01JG9 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=006-310-H10;TENOR=Os02t0567900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	21598138	21598477	.	+	0	Parent=Os02t0567900-01
Chr02	irgsp1_rep	CDS	21598769	21598824	.	+	2	Parent=Os02t0567900-01
Chr02	irgsp1_rep	CDS	21598914	21599044	.	+	0	Parent=Os02t0567900-01
Chr02	irgsp1_rep	CDS	21599172	21599268	.	+	1	Parent=Os02t0567900-01
Chr02	irgsp1_rep	CDS	21601964	21602119	.	+	0	Parent=Os02t0567900-01
Chr02	irgsp1_rep	three_prime_UTR	21602120	21602376	.	+	.	Parent=Os02t0567900-01
Chr02	irgsp1_rep	mRNA	21608220	21610020	.	+	.	ID=Os02t0568100-01;Name=Os02t0568100-01;Locus_id=Os02g0568100;Note=Similar to Non-phototropic hypocotyl 3.;Transcript_evidence=AK107582 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-130-E05;Expression=AK107582;TENOR=Os02t0568100-01;KEGG=Os02t0568100-01
Chr02	irgsp1_rep	five_prime_UTR	21608220	21608346	.	+	.	Parent=Os02t0568100-01
Chr02	irgsp1_rep	CDS	21608347	21608985	.	+	0	Parent=Os02t0568100-01
Chr02	irgsp1_rep	three_prime_UTR	21608986	21610020	.	+	.	Parent=Os02t0568100-01
Chr02	irgsp1_rep	mRNA	21608165	21613272	.	-	.	ID=Os02t0568200-00;Name=Os02t0568200-00;Locus_id=Os02g0568200;CGSNL Gene Symbol=CPT1;CGSNL Gene Name=COLEOPTILE PHOTOTROPISM 1;Oryzabase Gene Symbol Synonym(s)=cpt1;Oryzabase Gene Name Synonym(s)=coleoptile phototropism1%2C Coleoptile phototropism protein 1%2C Non-phototropic hypocotyl 3-like protein%2C NPH3-like protein%2C NPH3-like;Note=NPH3 domain containing protein.;Transcript_evidence=AB186127 (DDBJ%2C Best hit);ORF_evidence=Q5KS50 (UniProt);GO=Biological Process: response to light stimulus (GO:0009416),Molecular Function: signal transducer activity (GO:0004871);InterPro=NPH3 (IPR004249),BTB/POZ fold (IPR011333);Oryzabase=6025;TENOR=Os02t0568200-00;KEGG=Os02t0568200-00
Chr02	irgsp1_rep	five_prime_UTR	21612929	21613272	.	-	.	Parent=Os02t0568200-00
Chr02	irgsp1_rep	five_prime_UTR	21612798	21612856	.	-	.	Parent=Os02t0568200-00
Chr02	irgsp1_rep	CDS	21612670	21612797	.	-	0	Parent=Os02t0568200-00
Chr02	irgsp1_rep	CDS	21612500	21612569	.	-	1	Parent=Os02t0568200-00
Chr02	irgsp1_rep	CDS	21611541	21612219	.	-	0	Parent=Os02t0568200-00
Chr02	irgsp1_rep	CDS	21609031	21609821	.	-	2	Parent=Os02t0568200-00
Chr02	irgsp1_rep	CDS	21608340	21608960	.	-	0	Parent=Os02t0568200-00
Chr02	irgsp1_rep	three_prime_UTR	21608165	21608339	.	-	.	Parent=Os02t0568200-00
Chr02	irgsp1_rep	mRNA	21625022	21625725	.	+	.	ID=Os02t0568600-00;Name=Os02t0568600-00;Locus_id=Os02g0568600;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6YTF9 (UniProt);TENOR=Os02t0568600-00;KEGG=Os02t0568600-00
Chr02	irgsp1_rep	CDS	21625022	21625140	.	+	0	Parent=Os02t0568600-00
Chr02	irgsp1_rep	CDS	21625293	21625725	.	+	1	Parent=Os02t0568600-00
Chr02	irgsp1_rep	mRNA	21627356	21642080	.	-	.	ID=Os02t0568700-00;Name=Os02t0568700-00;Locus_id=Os02g0568700;Oryzabase Gene Symbol Synonym(s)=OsTPS5%2C TPS5;Oryzabase Gene Name Synonym(s)=terpene synthase 5;Note=Terpene synthase-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6YTF8 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: lyase activity (GO:0016829);InterPro=Terpene synthase-like (IPR001906),Terpene synthase%2C metal-binding domain (IPR005630),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930),Terpenoid synthase (IPR008949);Oryzabase=18706;TENOR=Os02t0568700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	21641993	21642080	.	-	0	Parent=Os02t0568700-00
Chr02	irgsp1_rep	CDS	21641774	21641879	.	-	2	Parent=Os02t0568700-00
Chr02	irgsp1_rep	CDS	21641577	21641674	.	-	1	Parent=Os02t0568700-00
Chr02	irgsp1_rep	CDS	21641108	21641211	.	-	2	Parent=Os02t0568700-00
Chr02	irgsp1_rep	CDS	21640787	21640902	.	-	0	Parent=Os02t0568700-00
Chr02	irgsp1_rep	CDS	21640342	21640437	.	-	1	Parent=Os02t0568700-00
Chr02	irgsp1_rep	CDS	21640018	21640260	.	-	1	Parent=Os02t0568700-00
Chr02	irgsp1_rep	CDS	21639773	21639914	.	-	1	Parent=Os02t0568700-00
Chr02	irgsp1_rep	CDS	21639130	21639654	.	-	0	Parent=Os02t0568700-00
Chr02	irgsp1_rep	CDS	21627356	21627382	.	-	0	Parent=Os02t0568700-00
Chr02	irgsp1_rep	mRNA	21662608	21664276	.	+	.	ID=Os02t0569000-01;Name=Os02t0569000-01;Locus_id=Os02g0569000;CGSNL Gene Symbol=CYP76M5;CGSNL Gene Name=P-450 76M5;Oryzabase Gene Symbol Synonym(s)=CYP76M5;Oryzabase Gene Name Synonym(s)=CytoChrome P450 76M5;Note=CytoChrome P450 family protein.;Transcript_evidence=AK059010 (DDBJ%2C Best hit);ORF_evidence=Q8S3F6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=001-020-H10;Oryzabase=9868;Expression=AK059010;TENOR=Os02t0569000-01;KEGG=Os02t0569000-01 (EC:1.14.99.9)
Chr02	irgsp1_rep	five_prime_UTR	21662608	21662635	.	+	.	Parent=Os02t0569000-01
Chr02	irgsp1_rep	CDS	21662636	21664141	.	+	0	Parent=Os02t0569000-01
Chr02	irgsp1_rep	three_prime_UTR	21664142	21664276	.	+	.	Parent=Os02t0569000-01
Chr02	irgsp1_rep	mRNA	21690378	21692113	.	+	.	ID=Os02t0569400-01;Name=Os02t0569400-01;Locus_id=Os02g0569400;CGSNL Gene Symbol=CYP76M8;CGSNL Gene Name=P-450 76M8;Oryzabase Gene Symbol Synonym(s)=CYP76M8;Oryzabase Gene Name Synonym(s)=CytoChrome P450 76M8;Note=CytoChrome P450 family protein.;Transcript_evidence=AK069701 (DDBJ%2C Best hit);ORF_evidence=C8C9S7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J023027B10;Oryzabase=9871;Expression=AK069701;TENOR=Os02t0569400-01;KEGG=Os02t0569400-01
Chr02	irgsp1_rep	five_prime_UTR	21690378	21690479	.	+	.	Parent=Os02t0569400-01
Chr02	irgsp1_rep	CDS	21690480	21691982	.	+	0	Parent=Os02t0569400-01
Chr02	irgsp1_rep	three_prime_UTR	21691983	21692113	.	+	.	Parent=Os02t0569400-01
Chr02	irgsp1_rep	mRNA	21690803	21692185	.	+	.	ID=Os02t0569400-02;Name=Os02t0569400-02;Locus_id=Os02g0569400;CGSNL Gene Symbol=CYP76M8;CGSNL Gene Name=P-450 76M8;Oryzabase Gene Symbol Synonym(s)=CYP76M8;Oryzabase Gene Name Synonym(s)=CytoChrome P450 76M8;Note=Similar to Cyt-P450 monooxygenase.;Transcript_evidence=AK060722 (DDBJ%2C Best hit);ORF_evidence=C8C9S7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=001-031-F11;Oryzabase=9871;Expression=AK060722;TENOR=Os02t0569400-02;KEGG=Os02t0569400-02
Chr02	irgsp1_rep	five_prime_UTR	21690803	21690803	.	+	.	Parent=Os02t0569400-02
Chr02	irgsp1_rep	CDS	21690804	21691982	.	+	0	Parent=Os02t0569400-02
Chr02	irgsp1_rep	three_prime_UTR	21691983	21692185	.	+	.	Parent=Os02t0569400-02
Chr02	irgsp1_rep	mRNA	21740304	21741960	.	+	.	ID=Os02t0569900-01;Name=Os02t0569900-01;Locus_id=Os02g0569900;CGSNL Gene Symbol=CYP76M7;CGSNL Gene Name=P-450 76M7;Oryzabase Gene Symbol Synonym(s)=OsCYP76M7%2C CYP76M10%2C OsCYP76M10;Oryzabase Gene Name Synonym(s)=CytoChrome P450 76M7;Note=CytoChrome P450 family protein.;Transcript_evidence=AK105913 (DDBJ%2C Best hit);ORF_evidence=C8C9S7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=001-204-H06;Oryzabase=9870;Expression=AK105913;TENOR=Os02t0569900-01;KEGG=Os02t0569900-01
Chr02	irgsp1_rep	five_prime_UTR	21740304	21740345	.	+	.	Parent=Os02t0569900-01
Chr02	irgsp1_rep	CDS	21740346	21741845	.	+	0	Parent=Os02t0569900-01
Chr02	irgsp1_rep	three_prime_UTR	21741846	21741960	.	+	.	Parent=Os02t0569900-01
Chr02	irgsp1_rep	mRNA	21754109	21756394	.	+	.	ID=Os02t0570300-00;Name=Os02t0570300-00;Locus_id=Os02g0570300;Note=Hypothetical gene.;Transcript_evidence=AK102532 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;Expression=AK102532;TENOR=Os02t0570300-00;KEGG=Os02t0570300-00
Chr02	irgsp1_rep	five_prime_UTR	21754109	21754304	.	+	.	Parent=Os02t0570300-00
Chr02	irgsp1_rep	five_prime_UTR	21754399	21754513	.	+	.	Parent=Os02t0570300-00
Chr02	irgsp1_rep	five_prime_UTR	21754697	21754867	.	+	.	Parent=Os02t0570300-00
Chr02	irgsp1_rep	five_prime_UTR	21754952	21755722	.	+	.	Parent=Os02t0570300-00
Chr02	irgsp1_rep	CDS	21755723	21756086	.	+	0	Parent=Os02t0570300-00
Chr02	irgsp1_rep	CDS	21756221	21756222	.	+	2	Parent=Os02t0570300-00
Chr02	irgsp1_rep	three_prime_UTR	21756223	21756394	.	+	.	Parent=Os02t0570300-00
Chr02	irgsp1_rep	mRNA	21765011	21773418	.	+	.	ID=Os02t0570400-01;Name=Os02t0570400-01;Locus_id=Os02g0570400;CGSNL Gene Symbol=KS7;CGSNL Gene Name=ENT-KAURENE SYNTHASE 7;Oryzabase Gene Symbol Synonym(s)=OsKS7%2C KS7%2C KSL7%2C OsKSL7%2C DTC1%2C OsDTC1%2C OsKS3%2C OsDTC1/OsKS7%2C OsTPS6;Oryzabase Gene Name Synonym(s)=rice ent-kaurene synthase7%2C Ent-kaurene synthase 7%2C Ent-kaurene synthase-like 7%2C Ent-cassa-12%2C 15-diene synthase%2C ent-Cassadiene synthase%2C Diterpene cyclase 1%2C Oryza sativa diterpene cyclase 1%2C terpene synthase 6;Note=Similar to Ent-kaurene synthase 1A.;Transcript_evidence=AK068310 (DDBJ%2C Best hit);ORF_evidence=Q0E088 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: lyase activity (GO:0016829);InterPro=Terpene synthase-like (IPR001906),Terpene synthase%2C metal-binding domain (IPR005630),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930),Terpenoid synthase (IPR008949);NIAS_FLcDNA=J013149A01;Oryzabase=3137;Expression=AK068310;TENOR=Os02t0570400-01;KEGG=Os02t0570400-01
Chr02	irgsp1_rep	five_prime_UTR	21765011	21765159	.	+	.	Parent=Os02t0570400-01
Chr02	irgsp1_rep	CDS	21765160	21765298	.	+	0	Parent=Os02t0570400-01
Chr02	irgsp1_rep	CDS	21765391	21765500	.	+	2	Parent=Os02t0570400-01
Chr02	irgsp1_rep	CDS	21768093	21768378	.	+	0	Parent=Os02t0570400-01
Chr02	irgsp1_rep	CDS	21768899	21769079	.	+	2	Parent=Os02t0570400-01
Chr02	irgsp1_rep	CDS	21769585	21769802	.	+	1	Parent=Os02t0570400-01
Chr02	irgsp1_rep	CDS	21770118	21770238	.	+	2	Parent=Os02t0570400-01
Chr02	irgsp1_rep	CDS	21770310	21770407	.	+	1	Parent=Os02t0570400-01
Chr02	irgsp1_rep	CDS	21770501	21770712	.	+	2	Parent=Os02t0570400-01
Chr02	irgsp1_rep	CDS	21770806	21770918	.	+	0	Parent=Os02t0570400-01
Chr02	irgsp1_rep	CDS	21771011	21771106	.	+	1	Parent=Os02t0570400-01
Chr02	irgsp1_rep	CDS	21771233	21771448	.	+	1	Parent=Os02t0570400-01
Chr02	irgsp1_rep	CDS	21771565	21771706	.	+	1	Parent=Os02t0570400-01
Chr02	irgsp1_rep	CDS	21771887	21772132	.	+	0	Parent=Os02t0570400-01
Chr02	irgsp1_rep	CDS	21772685	21772996	.	+	0	Parent=Os02t0570400-01
Chr02	irgsp1_rep	three_prime_UTR	21772997	21773418	.	+	.	Parent=Os02t0570400-01
Chr02	irgsp1_rep	mRNA	21788170	21791222	.	+	.	ID=Os02t0570500-01;Name=Os02t0570500-01;Locus_id=Os02g0570500;CGSNL Gene Symbol=CYP71Z6;CGSNL Gene Name=P-450 71Z6;Oryzabase Gene Symbol Synonym(s)=Oscyp71Z6;Oryzabase Gene Name Synonym(s)=CytoChrome P450 71Z6;Note=Similar to CytoChrome P450 family protein%2C expressed.;Transcript_evidence=AK107418 (DDBJ%2C Best hit);ORF_evidence=Q7XE29 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=002-127-F04;Oryzabase=9866;TENOR=Os02t0570500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	21788170	21788170	.	+	.	Parent=Os02t0570500-01
Chr02	irgsp1_rep	CDS	21788171	21789067	.	+	0	Parent=Os02t0570500-01
Chr02	irgsp1_rep	CDS	21790393	21791016	.	+	0	Parent=Os02t0570500-01
Chr02	irgsp1_rep	three_prime_UTR	21791017	21791222	.	+	.	Parent=Os02t0570500-01
Chr02	irgsp1_rep	mRNA	21788183	21790949	.	-	.	ID=Os02t0570600-00;Name=Os02t0570600-00;Locus_id=Os02g0570600;Note=Hypothetical protein.;Transcript_evidence=tplb0024g24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0570600-00
Chr02	irgsp1_rep	five_prime_UTR	21790421	21790949	.	-	.	Parent=Os02t0570600-00
Chr02	irgsp1_rep	CDS	21790362	21790420	.	-	0	Parent=Os02t0570600-00
Chr02	irgsp1_rep	CDS	21788183	21788998	.	-	1	Parent=Os02t0570600-00
Chr02	irgsp1_rep	mRNA	21810375	21813457	.	-	.	ID=Os02t0570700-01;Name=Os02t0570700-01;Locus_id=Os02g0570700;CGSNL Gene Symbol=CYP71Z7;CGSNL Gene Name=P-450 71Z7;Oryzabase Gene Symbol Synonym(s)=Oscyp71Z7;Oryzabase Gene Name Synonym(s)=CytoChrome P450 71Z7;Note=CytoChrome P450 family protein.;Transcript_evidence=AK070167 (DDBJ%2C Best hit);ORF_evidence=Q7XE29 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J023042H13;Oryzabase=9867;Expression=AK070167;TENOR=Os02t0570700-01;KEGG=Os02t0570700-01
Chr02	irgsp1_rep	five_prime_UTR	21813392	21813457	.	-	.	Parent=Os02t0570700-01
Chr02	irgsp1_rep	CDS	21812471	21813391	.	-	0	Parent=Os02t0570700-01
Chr02	irgsp1_rep	CDS	21810598	21811233	.	-	0	Parent=Os02t0570700-01
Chr02	irgsp1_rep	three_prime_UTR	21810375	21810597	.	-	.	Parent=Os02t0570700-01
Chr02	irgsp1_rep	mRNA	21810677	21813346	.	+	.	ID=Os02t0570800-00;Name=Os02t0570800-00;Locus_id=Os02g0570800;Note=Hypothetical protein.;Transcript_evidence=tplb0024g24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0570800-00
Chr02	irgsp1_rep	five_prime_UTR	21810677	21811168	.	+	.	Parent=Os02t0570800-00
Chr02	irgsp1_rep	CDS	21811169	21811222	.	+	0	Parent=Os02t0570800-00
Chr02	irgsp1_rep	CDS	21812459	21813322	.	+	0	Parent=Os02t0570800-00
Chr02	irgsp1_rep	three_prime_UTR	21813323	21813346	.	+	.	Parent=Os02t0570800-00
Chr02	irgsp1_rep	mRNA	21842227	21845380	.	-	.	ID=Os02t0571000-00;Name=Os02t0571000-00;Locus_id=Os02g0571000;Note=Hypothetical protein.;Transcript_evidence=tplb0042n04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0571000-00
Chr02	irgsp1_rep	CDS	21845276	21845380	.	-	0	Parent=Os02t0571000-00
Chr02	irgsp1_rep	CDS	21845044	21845144	.	-	0	Parent=Os02t0571000-00
Chr02	irgsp1_rep	CDS	21844486	21844720	.	-	1	Parent=Os02t0571000-00
Chr02	irgsp1_rep	CDS	21844376	21844381	.	-	0	Parent=Os02t0571000-00
Chr02	irgsp1_rep	three_prime_UTR	21844261	21844375	.	-	.	Parent=Os02t0571000-00
Chr02	irgsp1_rep	three_prime_UTR	21843693	21843793	.	-	.	Parent=Os02t0571000-00
Chr02	irgsp1_rep	three_prime_UTR	21843181	21843393	.	-	.	Parent=Os02t0571000-00
Chr02	irgsp1_rep	three_prime_UTR	21842227	21842665	.	-	.	Parent=Os02t0571000-00
Chr02	irgsp1_rep	mRNA	21841092	21847545	.	+	.	ID=Os02t0571100-01;Name=Os02t0571100-01;Locus_id=Os02g0571100;RAP-DB Gene Symbol Synonym(s)=OsCPS2%2C Os-CPS2%2C OsCyc2%2C OsCPS2ent;RAP-DB Gene Name Synonym(s)=ent-CPP synthase%2C ent-copalyl diphosphate synthase%2C ent-CDP synthase;CGSNL Gene Symbol=CPS2;CGSNL Gene Name=ENT-COPALYL DIPHOSPHATE SYNTHASE 2;Oryzabase Gene Symbol Synonym(s)=OsCPS2%2C cps2%2C OsCPS2ent%2C CYC2%2C OsCyc2%2C OsCYC2%2C OsCPSL1%2C cpsl1%2C OsCyc2/OsCPS2%2C OsTPS7%2C Os-CPS2;Oryzabase Gene Name Synonym(s)=rice ent-copalyl diphosphate (CDP) synthase2%2C ent-copalyl diphosphate synthase 2%2C Ent-CDP synthase 2%2C ent-copalyl diphosphate synthase like 1%2C cyclase2%2C cyclase 2%2C ent-CDP synthase%2C terpene synthase 7;Note=Ent-copalyl diphosphate synthase%2C Defense against both fungal pathogen and bacterial pathogen%2C Biosynthesis of phytoalexin;Transcript_evidence=AK072928 (truncated),AB066271,AY602991 (IR24);ORF_evidence=Q6Z5I0;GO=Biological Process: metabolic process (GO:0008152),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: terpene synthase activity (GO:0010333),Molecular Function: lyase activity (GO:0016829);InterPro=Terpene synthase%2C N-terminal domain superfamily (IPR036965),Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid (IPR008930),Isoprenoid synthase domain superfamily (IPR008949),Terpene synthase%2C N-terminal domain (IPR001906),Terpene synthase%2C metal-binding domain (IPR005630);NIAS_FLcDNA=J023144G04 (truncated);Manual Curation=June 12%2C 2018;Literature_PMID=29691314,15542489,15341631;Oryzabase=3128;Expression=AK072928;TENOR=Os02t0571100-01;KEGG=Os02t0571100-01 (EC:5.5.1.13);B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	21841092	21841267	.	+	.	Parent=Os02t0571100-01
Chr02	irgsp1_rep	CDS	21841268	21841391	.	+	0	Parent=Os02t0571100-01
Chr02	irgsp1_rep	CDS	21842042	21842651	.	+	2	Parent=Os02t0571100-01
Chr02	irgsp1_rep	CDS	21843164	21843378	.	+	1	Parent=Os02t0571100-01
Chr02	irgsp1_rep	CDS	21843679	21843799	.	+	2	Parent=Os02t0571100-01
Chr02	irgsp1_rep	CDS	21844267	21844379	.	+	1	Parent=Os02t0571100-01
Chr02	irgsp1_rep	CDS	21844484	21844713	.	+	2	Parent=Os02t0571100-01
Chr02	irgsp1_rep	CDS	21845035	21845150	.	+	0	Parent=Os02t0571100-01
Chr02	irgsp1_rep	CDS	21845282	21845380	.	+	1	Parent=Os02t0571100-01
Chr02	irgsp1_rep	CDS	21846001	21846246	.	+	1	Parent=Os02t0571100-01
Chr02	irgsp1_rep	CDS	21846698	21846797	.	+	1	Parent=Os02t0571100-01
Chr02	irgsp1_rep	CDS	21846887	21847093	.	+	0	Parent=Os02t0571100-01
Chr02	irgsp1_rep	CDS	21847191	21847412	.	+	0	Parent=Os02t0571100-01
Chr02	irgsp1_rep	three_prime_UTR	21847413	21847545	.	+	.	Parent=Os02t0571100-01
Chr02	irgsp1_rep	mRNA	21853581	21863592	.	-	.	ID=Os02t0571300-01;Name=Os02t0571300-01;Locus_id=Os02g0571300;CGSNL Gene Symbol=KS5;CGSNL Gene Name=ENT-KAURENE SYNTHASE 5;Oryzabase Gene Symbol Synonym(s)=OsKS5%2C KS5%2C KSL5%2C OsKSL5%2C KSL5i%2C OsKSL5i%2C KSL5j%2C OsKSL5j%2C KS6%2C OsKS6%2C OsTPS8;Oryzabase Gene Name Synonym(s)=rice ent-kaurene synthase5%2C Ent-kaurene synthase 5%2C Ent-kaurene synthase-like 5%2C "Ent-pimara-8(14)%2C 15-diene synthase"%2C ent-pimara-8(14) 15-diene synthase%2C Ent-kaurene synthase-like 6%2C KAURENE SYNTHASE-LIKE 5%2C terpene synthase 8;Note=Terpenoid synthase domain containing protein.;Transcript_evidence=AK121446 (DDBJ%2C Best hit);ORF_evidence=Q6Z5J6 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: lyase activity (GO:0016829);InterPro=Terpene synthase-like (IPR001906),Terpene synthase%2C metal-binding domain (IPR005630),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930),Terpenoid synthase (IPR008949);NIAS_FLcDNA=J023141H19;Oryzabase=3135;Expression=AK121446;TENOR=Os02t0571300-01;KEGG=Os02t0571300-01
Chr02	irgsp1_rep	five_prime_UTR	21863415	21863592	.	-	.	Parent=Os02t0571300-01
Chr02	irgsp1_rep	five_prime_UTR	21862152	21862173	.	-	.	Parent=Os02t0571300-01
Chr02	irgsp1_rep	CDS	21862043	21862151	.	-	0	Parent=Os02t0571300-01
Chr02	irgsp1_rep	CDS	21861177	21861238	.	-	2	Parent=Os02t0571300-01
Chr02	irgsp1_rep	CDS	21860196	21860481	.	-	0	Parent=Os02t0571300-01
Chr02	irgsp1_rep	CDS	21859905	21860085	.	-	2	Parent=Os02t0571300-01
Chr02	irgsp1_rep	CDS	21856215	21856432	.	-	1	Parent=Os02t0571300-01
Chr02	irgsp1_rep	CDS	21855991	21856111	.	-	2	Parent=Os02t0571300-01
Chr02	irgsp1_rep	CDS	21855779	21855876	.	-	1	Parent=Os02t0571300-01
Chr02	irgsp1_rep	CDS	21855453	21855665	.	-	2	Parent=Os02t0571300-01
Chr02	irgsp1_rep	CDS	21855204	21855333	.	-	2	Parent=Os02t0571300-01
Chr02	irgsp1_rep	CDS	21855017	21855112	.	-	1	Parent=Os02t0571300-01
Chr02	irgsp1_rep	CDS	21854705	21854920	.	-	1	Parent=Os02t0571300-01
Chr02	irgsp1_rep	CDS	21854485	21854626	.	-	1	Parent=Os02t0571300-01
Chr02	irgsp1_rep	CDS	21853802	21854395	.	-	0	Parent=Os02t0571300-01
Chr02	irgsp1_rep	three_prime_UTR	21853581	21853801	.	-	.	Parent=Os02t0571300-01
Chr02	irgsp1_rep	mRNA	21886504	21897686	.	-	.	ID=Os02t0571800-00;Name=Os02t0571800-00;Locus_id=Os02g0571800;CGSNL Gene Symbol=KS6;CGSNL Gene Name=ENT-KAURENE SYNTHASE 6;Oryzabase Gene Symbol Synonym(s)=OsKS6%2C KS6%2C KSL6%2C OsKSL6%2C KS5%2C OsKS5%2C OsTPS9;Oryzabase Gene Name Synonym(s)=rice ent-kaurene synthase6%2C Ent-kaurene synthase-like 6%2C Ent-kaurene synthase 6%2C Ent-kaurene synthase-like 5%2C KAURENE SYNTHASE-LIKE 6%2C terpene synthase 9;Note=Terpene synthase-like domain containing protein.;Transcript_evidence=DQ823353 (DDBJ%2C Best hit);ORF_evidence=A4KAG8 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: lyase activity (GO:0016829);InterPro=Terpene synthase-like (IPR001906),Terpene synthase%2C metal-binding domain (IPR005630),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930),Terpenoid synthase (IPR008949);Oryzabase=3136;TENOR=Os02t0571800-00;KEGG=Os02t0571800-00
Chr02	irgsp1_rep	CDS	21897572	21897686	.	-	0	Parent=Os02t0571800-00
Chr02	irgsp1_rep	CDS	21897065	21897126	.	-	2	Parent=Os02t0571800-00
Chr02	irgsp1_rep	CDS	21895927	21896212	.	-	0	Parent=Os02t0571800-00
Chr02	irgsp1_rep	CDS	21895638	21895818	.	-	2	Parent=Os02t0571800-00
Chr02	irgsp1_rep	CDS	21889355	21889572	.	-	1	Parent=Os02t0571800-00
Chr02	irgsp1_rep	CDS	21889118	21889238	.	-	2	Parent=Os02t0571800-00
Chr02	irgsp1_rep	CDS	21888906	21889003	.	-	1	Parent=Os02t0571800-00
Chr02	irgsp1_rep	CDS	21888580	21888792	.	-	2	Parent=Os02t0571800-00
Chr02	irgsp1_rep	CDS	21887910	21888039	.	-	2	Parent=Os02t0571800-00
Chr02	irgsp1_rep	CDS	21887723	21887818	.	-	1	Parent=Os02t0571800-00
Chr02	irgsp1_rep	CDS	21887412	21887621	.	-	1	Parent=Os02t0571800-00
Chr02	irgsp1_rep	CDS	21887188	21887329	.	-	1	Parent=Os02t0571800-00
Chr02	irgsp1_rep	CDS	21886504	21887097	.	-	0	Parent=Os02t0571800-00
Chr02	irgsp1_rep	mRNA	21904598	21906238	.	-	.	ID=Os02t0571900-01;Name=Os02t0571900-01;Locus_id=Os02g0571900;CGSNL Gene Symbol=CYP76M6;CGSNL Gene Name=P-450 76M6;Oryzabase Gene Symbol Synonym(s)=OsCYP76M6;Oryzabase Gene Name Synonym(s)=CytoChrome P450 76M6;Note=CytoChrome P450 family protein.;Transcript_evidence=AK101003 (DDBJ%2C Best hit);ORF_evidence=C8C9S7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J023147I20;Oryzabase=9869;Expression=AK101003;TENOR=Os02t0571900-01;KEGG=Os02t0571900-01
Chr02	irgsp1_rep	five_prime_UTR	21906188	21906238	.	-	.	Parent=Os02t0571900-01
Chr02	irgsp1_rep	CDS	21904649	21906187	.	-	0	Parent=Os02t0571900-01
Chr02	irgsp1_rep	three_prime_UTR	21904598	21904648	.	-	.	Parent=Os02t0571900-01
Chr02	irgsp1_rep	mRNA	21904824	21906343	.	+	.	ID=Os02t0572000-01;Name=Os02t0572000-01;Locus_id=Os02g0572000;Note=Hypothetical protein.;Transcript_evidence=AK105571 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-128-D01;Expression=AK105571;TENOR=Os02t0572000-01;KEGG=Os02t0572000-01
Chr02	irgsp1_rep	five_prime_UTR	21904824	21905339	.	+	.	Parent=Os02t0572000-01
Chr02	irgsp1_rep	CDS	21905340	21905693	.	+	0	Parent=Os02t0572000-01
Chr02	irgsp1_rep	three_prime_UTR	21905694	21906343	.	+	.	Parent=Os02t0572000-01
Chr02	irgsp1_rep	mRNA	21911717	21914209	.	+	.	ID=Os02t0572050-00;Name=Os02t0572050-00;Locus_id=Os02g0572050;Note=Similar to Ent-cassa-12%2C15-diene synthase.;Transcript_evidence=AY551437 (DDBJ);ORF_evidence=Q00G37 (UniProt);GO=Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: lyase activity (GO:0016829);InterPro=Terpene synthase%2C metal-binding domain (IPR005630),Terpenoid synthase (IPR008949);TENOR=Os02t0572050-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	21911717	21911771	.	+	.	Parent=Os02t0572050-00
Chr02	irgsp1_rep	five_prime_UTR	21911969	21911979	.	+	.	Parent=Os02t0572050-00
Chr02	irgsp1_rep	CDS	21911980	21912198	.	+	0	Parent=Os02t0572050-00
Chr02	irgsp1_rep	CDS	21912497	21912601	.	+	0	Parent=Os02t0572050-00
Chr02	irgsp1_rep	CDS	21914051	21914209	.	+	0	Parent=Os02t0572050-00
Chr02	irgsp1_rep	mRNA	21917368	21918679	.	+	.	ID=Os02t0572200-01;Name=Os02t0572200-01;Locus_id=Os02g0572200;Note=Similar to RING-H2 finger protein ATL3I (YGHL1-C3HC4 RING fusion protein).;Transcript_evidence=AK109591 (DDBJ%2C Best hit);ORF_evidence=Q01JI8 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=002-137-C02;Expression=AK109591;TENOR=Os02t0572200-01;KEGG=Os02t0572200-01
Chr02	irgsp1_rep	five_prime_UTR	21917368	21917418	.	+	.	Parent=Os02t0572200-01
Chr02	irgsp1_rep	CDS	21917419	21918468	.	+	0	Parent=Os02t0572200-01
Chr02	irgsp1_rep	three_prime_UTR	21918469	21918679	.	+	.	Parent=Os02t0572200-01
Chr02	irgsp1_rep	mRNA	21922917	21926203	.	-	.	ID=Os02t0572300-00;Name=Os02t0572300-00;Locus_id=Os02g0572300;Note=Similar to RING-H2 finger protein ATL3B.;Transcript_evidence=BT040259 (DDBJ);ORF_evidence=NP_001149492.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os02t0572300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	21925872	21926203	.	-	0	Parent=Os02t0572300-00
Chr02	irgsp1_rep	CDS	21922917	21923841	.	-	1	Parent=Os02t0572300-00
Chr02	irgsp1_rep	mRNA	21923371	21923978	.	+	.	ID=Os02t0572351-00;Name=Os02t0572351-00;Locus_id=Os02g0572351;Note=Hypothetical protein.;Transcript_evidence=EU943053 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0572351-00
Chr02	irgsp1_rep	five_prime_UTR	21923371	21923493	.	+	.	Parent=Os02t0572351-00
Chr02	irgsp1_rep	CDS	21923494	21923978	.	+	0	Parent=Os02t0572351-00
Chr02	irgsp1_rep	mRNA	21930667	21935565	.	-	.	ID=Os02t0572400-01;Name=Os02t0572400-01;Locus_id=Os02g0572400;Note=Similar to Riboflavin biosynthesis protein ribA%2C chloroplast precursor [Includes: GTP cyclohydrolase II (EC 3.5.4.25)%3B 3%2C4-dihydroxy-2-butanone 4- phosphate synthase (DHBP synthase)].;Transcript_evidence=AK069475 (DDBJ%2C Best hit);ORF_evidence=NP_201235.4 (RefSeq);GO=Biological Process: riboflavin biosynthetic process (GO:0009231),Molecular Function: GTP cyclohydrolase II activity (GO:0003935),Molecular Function: 3%2C4-dihydroxy-2-butanone-4-phosphate synthase activity (GO:0008686);InterPro=3%2C4-dihydroxy-2-butanone 4-phosphate synthase%2C RibB (IPR000422),GTP cyclohydrolase II%2C RibA (IPR000926),DHBP synthase RibB-like alpha/beta domain (IPR017945);NIAS_FLcDNA=J023020F21;Expression=AK069475;TENOR=Os02t0572400-01;KEGG=Os02t0572400-01 (EC:3.5.4.25%2C EC:4.1.99.12)
Chr02	irgsp1_rep	five_prime_UTR	21935404	21935565	.	-	.	Parent=Os02t0572400-01
Chr02	irgsp1_rep	five_prime_UTR	21935148	21935180	.	-	.	Parent=Os02t0572400-01
Chr02	irgsp1_rep	CDS	21935095	21935147	.	-	0	Parent=Os02t0572400-01
Chr02	irgsp1_rep	CDS	21934300	21934696	.	-	1	Parent=Os02t0572400-01
Chr02	irgsp1_rep	CDS	21933992	21934213	.	-	0	Parent=Os02t0572400-01
Chr02	irgsp1_rep	CDS	21932984	21933306	.	-	0	Parent=Os02t0572400-01
Chr02	irgsp1_rep	CDS	21932398	21932527	.	-	1	Parent=Os02t0572400-01
Chr02	irgsp1_rep	CDS	21931991	21932287	.	-	0	Parent=Os02t0572400-01
Chr02	irgsp1_rep	CDS	21931007	21931246	.	-	0	Parent=Os02t0572400-01
Chr02	irgsp1_rep	three_prime_UTR	21930667	21931006	.	-	.	Parent=Os02t0572400-01
Chr02	irgsp1_rep	mRNA	21930682	21934205	.	-	.	ID=Os02t0572400-02;Name=Os02t0572400-02;Locus_id=Os02g0572400;Note=Similar to predicted protein.;Transcript_evidence=AK058464 (DDBJ%2C Best hit);ORF_evidence=NP_201235.4 (RefSeq);GO=Biological Process: riboflavin biosynthetic process (GO:0009231),Molecular Function: GTP cyclohydrolase II activity (GO:0003935),Molecular Function: 3%2C4-dihydroxy-2-butanone-4-phosphate synthase activity (GO:0008686);InterPro=3%2C4-dihydroxy-2-butanone 4-phosphate synthase%2C RibB (IPR000422),GTP cyclohydrolase II%2C RibA (IPR000926),Riboflavin biosynthesis protein RibBA (IPR016299),DHBP synthase RibB-like alpha/beta domain (IPR017945);NIAS_FLcDNA=001-016-A10;Expression=AK058464;TENOR=Os02t0572400-02;KEGG=Os02t0572400-02 (EC:3.5.4.25%2C EC:4.1.99.12)
Chr02	irgsp1_rep	five_prime_UTR	21934205	21934205	.	-	.	Parent=Os02t0572400-02
Chr02	irgsp1_rep	CDS	21933992	21934204	.	-	0	Parent=Os02t0572400-02
Chr02	irgsp1_rep	CDS	21932984	21933306	.	-	0	Parent=Os02t0572400-02
Chr02	irgsp1_rep	CDS	21932398	21932527	.	-	1	Parent=Os02t0572400-02
Chr02	irgsp1_rep	CDS	21931991	21932287	.	-	0	Parent=Os02t0572400-02
Chr02	irgsp1_rep	CDS	21931007	21931246	.	-	0	Parent=Os02t0572400-02
Chr02	irgsp1_rep	three_prime_UTR	21930682	21931006	.	-	.	Parent=Os02t0572400-02
Chr02	irgsp1_rep	mRNA	21931068	21932526	.	+	.	ID=Os02t0572500-00;Name=Os02t0572500-00;Locus_id=Os02g0572500;Note=Non-protein coding transcript.;Transcript_evidence=BT009228 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0572500-00
Chr02	irgsp1_rep	exon	21931068	21931245	.	+	.	Parent=Os02t0572500-00
Chr02	irgsp1_rep	exon	21931989	21932289	.	+	.	Parent=Os02t0572500-00
Chr02	irgsp1_rep	exon	21932390	21932526	.	+	.	Parent=Os02t0572500-00
Chr02	irgsp1_rep	mRNA	21949904	21951772	.	-	.	ID=Os02t0572600-01;Name=Os02t0572600-01;Locus_id=Os02g0572600;Oryzabase Gene Name Synonym(s)=Protein kinase PKN/PRK1 effector domain-containing protein;Note=Protein kinase PKN/PRK1%2C effector domain containing protein.;Transcript_evidence=AK102182 (DDBJ%2C Best hit);ORF_evidence=B8AEA6 (UniProt);NIAS_FLcDNA=J033086M11;Oryzabase=22048;Expression=AK102182;TENOR=Os02t0572600-01;KEGG=Os02t0572600-01
Chr02	irgsp1_rep	five_prime_UTR	21951702	21951772	.	-	.	Parent=Os02t0572600-01
Chr02	irgsp1_rep	CDS	21951682	21951701	.	-	0	Parent=Os02t0572600-01
Chr02	irgsp1_rep	CDS	21951465	21951573	.	-	1	Parent=Os02t0572600-01
Chr02	irgsp1_rep	CDS	21950023	21951381	.	-	0	Parent=Os02t0572600-01
Chr02	irgsp1_rep	three_prime_UTR	21949904	21950022	.	-	.	Parent=Os02t0572600-01
Chr02	irgsp1_rep	mRNA	21956715	21960121	.	-	.	ID=Os02t0572900-01;Name=Os02t0572900-01;Locus_id=Os02g0572900;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK071320 (DDBJ%2C Best hit);ORF_evidence=NP_001152939.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J023088A12;Expression=AK071320;TENOR=Os02t0572900-01;KEGG=Os02t0572900-01
Chr02	irgsp1_rep	five_prime_UTR	21960092	21960121	.	-	.	Parent=Os02t0572900-01
Chr02	irgsp1_rep	CDS	21958937	21960091	.	-	0	Parent=Os02t0572900-01
Chr02	irgsp1_rep	three_prime_UTR	21958915	21958936	.	-	.	Parent=Os02t0572900-01
Chr02	irgsp1_rep	three_prime_UTR	21956715	21957147	.	-	.	Parent=Os02t0572900-01
Chr02	irgsp1_rep	mRNA	21976544	21980274	.	+	.	ID=Os02t0573200-01;Name=Os02t0573200-01;Locus_id=Os02g0573200;Oryzabase Gene Symbol Synonym(s)=OsCRY1a%2C OsCRY1%2C CRY1a%2C CRY2;Oryzabase Gene Name Synonym(s)=cryptoChrome 1a%2C Blue-light-receptor cryptoChrome 1;Note=Similar to CryptoChrome 1.;Transcript_evidence=AK064910 (DDBJ%2C Best hit);ORF_evidence=Q948J6 (UniProt);GO=Biological Process: DNA repair (GO:0006281),Molecular Function: DNA photolyase activity (GO:0003913);InterPro=CryptoChrome/DNA photolyase%2C class 1 (IPR002081),DNA photolyase%2C FAD-binding/CryptoChrome%2C C-terminal (IPR005101),DNA photolyase%2C N-terminal (IPR006050),CryptoChrome%2C plant (IPR014134),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),CryptoChrome/DNA photolyase%2C class 1 conserved site%2C C-terminal (IPR018394),CryptoChrome C-terminal (IPR020978);NIAS_FLcDNA=J013000M07;Oryzabase=11125;Expression=AK064910;TENOR=Os02t0573200-01;KEGG=Os02t0573200-01
Chr02	irgsp1_rep	five_prime_UTR	21976544	21976930	.	+	.	Parent=Os02t0573200-01
Chr02	irgsp1_rep	CDS	21976931	21977288	.	+	0	Parent=Os02t0573200-01
Chr02	irgsp1_rep	CDS	21977906	21978834	.	+	2	Parent=Os02t0573200-01
Chr02	irgsp1_rep	CDS	21978924	21979765	.	+	0	Parent=Os02t0573200-01
Chr02	irgsp1_rep	CDS	21979960	21979987	.	+	1	Parent=Os02t0573200-01
Chr02	irgsp1_rep	three_prime_UTR	21979988	21980274	.	+	.	Parent=Os02t0573200-01
Chr02	irgsp1_rep	mRNA	21976868	21980296	.	+	.	ID=Os02t0573200-02;Name=Os02t0573200-02;Locus_id=Os02g0573200;RAP-DB Gene Symbol Synonym(s)=OsCRY1a%2C OsCRY1%2C CRY1a%2C CRY2;RAP-DB Gene Name Synonym(s)=cryptoChrome 1a%2C Blue-light-receptor cryptoChrome 1;Oryzabase Gene Symbol Synonym(s)=OsCRY1a%2C OsCRY1%2C CRY1a%2C CRY2;Oryzabase Gene Name Synonym(s)=cryptoChrome 1a%2C Blue-light-receptor cryptoChrome 1;Note=CryptoChrome 1a%2C blue light photoreceptor%2C Regulation of blue light-mediated de-etiolation%2C Blue light-dependent inhibition of coleoptile and leaf elongation;Transcript_evidence=AB073546;ORF_evidence=Q948J6;GO=Biological Process: blue light signaling pathway (GO:0009785),Molecular Function: blue light photoreceptor activity (GO:0009882);InterPro=CryptoChrome/DNA photolyase class 1 (IPR002081),CryptoChrome%2C plant (IPR014134),DNA photolyase%2C N-terminal (IPR006050),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),CryptoChrome/DNA photolyase%2C FAD-binding domain (IPR005101),CryptoChrome C-terminal (IPR020978),CryptoChrome/DNA photolyase class 1%2C conserved site%2C C-terminal (IPR018394);Manual Curation=September 12%2C 2016;Literature_PMID=16760221;Oryzabase=11125
Chr02	irgsp1_rep	five_prime_UTR	21976868	21976930	.	+	.	Parent=Os02t0573200-02
Chr02	irgsp1_rep	CDS	21976931	21977288	.	+	0	Parent=Os02t0573200-02
Chr02	irgsp1_rep	CDS	21977906	21978834	.	+	2	Parent=Os02t0573200-02
Chr02	irgsp1_rep	CDS	21978924	21979769	.	+	0	Parent=Os02t0573200-02
Chr02	irgsp1_rep	three_prime_UTR	21979770	21979782	.	+	.	Parent=Os02t0573200-02
Chr02	irgsp1_rep	three_prime_UTR	21979960	21980296	.	+	.	Parent=Os02t0573200-02
Chr02	irgsp1_rep	mRNA	21981053	21986507	.	-	.	ID=Os02t0573300-01;Name=Os02t0573300-01;Locus_id=Os02g0573300;Note=Similar to Nucleotide-sugar transporter/ sugar porter.;Transcript_evidence=AK066007 (DDBJ%2C Best hit);ORF_evidence=B6T3E1 (UniProt);GO=Biological Process: carbohydrate transport (GO:0008643),Cellular Component: Golgi membrane (GO:0000139),Cellular Component: integral to membrane (GO:0016021),Molecular Function: sugar:hydrogen symporter activity (GO:0005351);InterPro=Nucleotide-sugar transporter (IPR007271);NIAS_FLcDNA=J013044K14;TENOR=Os02t0573300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	21986331	21986507	.	-	.	Parent=Os02t0573300-01
Chr02	irgsp1_rep	CDS	21986206	21986330	.	-	0	Parent=Os02t0573300-01
Chr02	irgsp1_rep	CDS	21985366	21985414	.	-	1	Parent=Os02t0573300-01
Chr02	irgsp1_rep	CDS	21984992	21985291	.	-	0	Parent=Os02t0573300-01
Chr02	irgsp1_rep	three_prime_UTR	21982734	21984991	.	-	.	Parent=Os02t0573300-01
Chr02	irgsp1_rep	three_prime_UTR	21982521	21982664	.	-	.	Parent=Os02t0573300-01
Chr02	irgsp1_rep	three_prime_UTR	21981673	21981748	.	-	.	Parent=Os02t0573300-01
Chr02	irgsp1_rep	three_prime_UTR	21981053	21981595	.	-	.	Parent=Os02t0573300-01
Chr02	irgsp1_rep	mRNA	21986709	21991419	.	-	.	ID=Os02t0573400-01;Name=Os02t0573400-01;Locus_id=Os02g0573400;CGSNL Gene Symbol=UBP2-1;CGSNL Gene Name=UBIQUITIN-SPECIFIC PROCESSING PROTEASE 2-1;Oryzabase Gene Symbol Synonym(s)=OsUBP2-1%2C OsUBP18%2C UBP18;Oryzabase Gene Name Synonym(s)=ubiquitin-specific processing protease 2-1%2C Ubiquitin-specific protease 18;Note=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 family protein.;Transcript_evidence=AK287848 (DDBJ%2C Best hit);ORF_evidence=A2X6C1 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Molecular Function: ubiquitin thiolesterase activity (GO:0004221);InterPro=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (IPR001394),Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2%2C conserved site (IPR018200);NIAS_FLcDNA=J065195H22;Oryzabase=22872;TENOR=Os02t0573400-01;KEGG=Os02t0573400-01 (EC:3.1.2.15)
Chr02	irgsp1_rep	five_prime_UTR	21991347	21991419	.	-	.	Parent=Os02t0573400-01
Chr02	irgsp1_rep	CDS	21991083	21991346	.	-	0	Parent=Os02t0573400-01
Chr02	irgsp1_rep	CDS	21989606	21989722	.	-	0	Parent=Os02t0573400-01
Chr02	irgsp1_rep	CDS	21988751	21988849	.	-	0	Parent=Os02t0573400-01
Chr02	irgsp1_rep	CDS	21988129	21988311	.	-	0	Parent=Os02t0573400-01
Chr02	irgsp1_rep	CDS	21987867	21988048	.	-	0	Parent=Os02t0573400-01
Chr02	irgsp1_rep	CDS	21987157	21987559	.	-	1	Parent=Os02t0573400-01
Chr02	irgsp1_rep	three_prime_UTR	21986709	21987156	.	-	.	Parent=Os02t0573400-01
Chr02	irgsp1_rep	mRNA	21995524	22002502	.	+	.	ID=Os02t0573500-01;Name=Os02t0573500-01;Locus_id=Os02g0573500;Note=Similar to Monosaccharide transporter 1.;Transcript_evidence=AK119890 (DDBJ%2C Best hit),AK121678 (DDBJ%2C Best hit);ORF_evidence=NP_001149506.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=002-180-A05,J033069H05;Expression=AK119890;TENOR=Os02t0573500-01;KEGG=Os02t0573500-01
Chr02	irgsp1_rep	five_prime_UTR	21995524	21995597	.	+	.	Parent=Os02t0573500-01
Chr02	irgsp1_rep	CDS	21995598	21995754	.	+	0	Parent=Os02t0573500-01
Chr02	irgsp1_rep	CDS	22000719	22001038	.	+	2	Parent=Os02t0573500-01
Chr02	irgsp1_rep	CDS	22001127	22002233	.	+	0	Parent=Os02t0573500-01
Chr02	irgsp1_rep	three_prime_UTR	22002234	22002502	.	+	.	Parent=Os02t0573500-01
Chr02	irgsp1_rep	mRNA	21995590	22002199	.	-	.	ID=Os02t0573601-00;Name=Os02t0573601-00;Locus_id=Os02g0573601;Note=Hypothetical protein.;Transcript_evidence=tplb0053a05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0573601-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	22002198	22002199	.	-	.	Parent=Os02t0573601-00
Chr02	irgsp1_rep	CDS	22001116	22002197	.	-	0	Parent=Os02t0573601-00
Chr02	irgsp1_rep	CDS	22000992	22001025	.	-	1	Parent=Os02t0573601-00
Chr02	irgsp1_rep	three_prime_UTR	22000729	22000991	.	-	.	Parent=Os02t0573601-00
Chr02	irgsp1_rep	three_prime_UTR	21995590	21995766	.	-	.	Parent=Os02t0573601-00
Chr02	irgsp1_rep	mRNA	22010746	22012100	.	+	.	ID=Os02t0574000-01;Name=Os02t0574000-01;Locus_id=Os02g0574000;Note=Similar to Monosaccharide transporter 1.;Transcript_evidence=AK099415 (DDBJ%2C Best hit);ORF_evidence=NP_001149506.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J013005I22;Expression=AK099415;TENOR=Os02t0574000-01;KEGG=Os02t0574000-01
Chr02	irgsp1_rep	five_prime_UTR	22010746	22010746	.	+	.	Parent=Os02t0574000-01
Chr02	irgsp1_rep	CDS	22010747	22011853	.	+	0	Parent=Os02t0574000-01
Chr02	irgsp1_rep	three_prime_UTR	22011854	22012100	.	+	.	Parent=Os02t0574000-01
Chr02	irgsp1_rep	mRNA	22013289	22017622	.	+	.	ID=Os02t0574100-01;Name=Os02t0574100-01;Locus_id=Os02g0574100;Note=Sugar/inositol transporter domain containing protein.;Transcript_evidence=AK068280 (DDBJ%2C Best hit);ORF_evidence=NP_001149506.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J013136H14;Expression=AK068280;TENOR=Os02t0574100-01;KEGG=Os02t0574100-01
Chr02	irgsp1_rep	five_prime_UTR	22013289	22013354	.	+	.	Parent=Os02t0574100-01
Chr02	irgsp1_rep	CDS	22013355	22013502	.	+	0	Parent=Os02t0574100-01
Chr02	irgsp1_rep	CDS	22015881	22016200	.	+	2	Parent=Os02t0574100-01
Chr02	irgsp1_rep	CDS	22016316	22017404	.	+	0	Parent=Os02t0574100-01
Chr02	irgsp1_rep	three_prime_UTR	22017405	22017622	.	+	.	Parent=Os02t0574100-01
Chr02	irgsp1_rep	mRNA	22015877	22017361	.	-	.	ID=Os02t0574300-00;Name=Os02t0574300-00;Locus_id=Os02g0574300;Note=Hypothetical protein.;Transcript_evidence=tplb0053a05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0574300-00
Chr02	irgsp1_rep	five_prime_UTR	22017185	22017361	.	-	.	Parent=Os02t0574300-00
Chr02	irgsp1_rep	CDS	22016801	22017184	.	-	0	Parent=Os02t0574300-00
Chr02	irgsp1_rep	three_prime_UTR	22016313	22016800	.	-	.	Parent=Os02t0574300-00
Chr02	irgsp1_rep	three_prime_UTR	22015877	22016197	.	-	.	Parent=Os02t0574300-00
Chr02	irgsp1_rep	mRNA	22038665	22041979	.	-	.	ID=Os02t0574500-01;Name=Os02t0574500-01;Locus_id=Os02g0574500;Note=General substrate transporter domain containing protein.;Transcript_evidence=AK065365 (DDBJ%2C Best hit);ORF_evidence=XP_002454049.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transmembrane transporter activity (GO:0022857);InterPro=General substrate transporter (IPR005828);NIAS_FLcDNA=J013003K19;TENOR=Os02t0574500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	22041840	22041979	.	-	.	Parent=Os02t0574500-01
Chr02	irgsp1_rep	five_prime_UTR	22041566	22041732	.	-	.	Parent=Os02t0574500-01
Chr02	irgsp1_rep	five_prime_UTR	22040316	22040324	.	-	.	Parent=Os02t0574500-01
Chr02	irgsp1_rep	CDS	22040019	22040315	.	-	0	Parent=Os02t0574500-01
Chr02	irgsp1_rep	CDS	22039267	22039908	.	-	0	Parent=Os02t0574500-01
Chr02	irgsp1_rep	CDS	22038858	22039154	.	-	0	Parent=Os02t0574500-01
Chr02	irgsp1_rep	three_prime_UTR	22038665	22038857	.	-	.	Parent=Os02t0574500-01
Chr02	irgsp1_rep	mRNA	22038669	22040060	.	-	.	ID=Os02t0574500-02;Name=Os02t0574500-02;Locus_id=Os02g0574500;Note=General substrate transporter domain containing protein.;Transcript_evidence=AK059863 (DDBJ%2C Best hit);ORF_evidence=XP_002454049.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transmembrane transporter activity (GO:0022857);InterPro=General substrate transporter (IPR005828);NIAS_FLcDNA=006-207-C10;TENOR=Os02t0574500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	22040019	22040060	.	-	0	Parent=Os02t0574500-02
Chr02	irgsp1_rep	CDS	22039267	22039908	.	-	0	Parent=Os02t0574500-02
Chr02	irgsp1_rep	CDS	22038858	22039154	.	-	0	Parent=Os02t0574500-02
Chr02	irgsp1_rep	three_prime_UTR	22038669	22038857	.	-	.	Parent=Os02t0574500-02
Chr02	irgsp1_rep	mRNA	22038664	22041879	.	-	.	ID=Os02t0574500-03;Name=Os02t0574500-03;Locus_id=Os02g0574500;Note=General substrate transporter domain containing protein.;Transcript_evidence=AK103980 (DDBJ%2C Best hit);ORF_evidence=XP_002454049.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transmembrane transporter activity (GO:0022857);InterPro=General substrate transporter (IPR005828);NIAS_FLcDNA=001-017-B07;TENOR=Os02t0574500-03
Chr02	irgsp1_rep	five_prime_UTR	22041840	22041879	.	-	.	Parent=Os02t0574500-03
Chr02	irgsp1_rep	five_prime_UTR	22041566	22041732	.	-	.	Parent=Os02t0574500-03
Chr02	irgsp1_rep	five_prime_UTR	22040316	22040324	.	-	.	Parent=Os02t0574500-03
Chr02	irgsp1_rep	CDS	22040019	22040315	.	-	0	Parent=Os02t0574500-03
Chr02	irgsp1_rep	CDS	22039267	22039908	.	-	0	Parent=Os02t0574500-03
Chr02	irgsp1_rep	CDS	22038858	22039154	.	-	0	Parent=Os02t0574500-03
Chr02	irgsp1_rep	three_prime_UTR	22038664	22038857	.	-	.	Parent=Os02t0574500-03
Chr02	irgsp1_rep	mRNA	22043899	22046884	.	-	.	ID=Os02t0574600-01;Name=Os02t0574600-01;Locus_id=Os02g0574600;Note=Similar to H0523F07.2 protein.;Transcript_evidence=AK059246 (DDBJ%2C Best hit);ORF_evidence=Q01JR1 (UniProt);NIAS_FLcDNA=001-024-G05;Expression=AK059246;TENOR=Os02t0574600-01;KEGG=Os02t0574600-01
Chr02	irgsp1_rep	five_prime_UTR	22046829	22046884	.	-	.	Parent=Os02t0574600-01
Chr02	irgsp1_rep	CDS	22046691	22046828	.	-	0	Parent=Os02t0574600-01
Chr02	irgsp1_rep	CDS	22046508	22046581	.	-	0	Parent=Os02t0574600-01
Chr02	irgsp1_rep	CDS	22045331	22045466	.	-	1	Parent=Os02t0574600-01
Chr02	irgsp1_rep	CDS	22044700	22045011	.	-	0	Parent=Os02t0574600-01
Chr02	irgsp1_rep	CDS	22044060	22044332	.	-	0	Parent=Os02t0574600-01
Chr02	irgsp1_rep	three_prime_UTR	22043899	22044059	.	-	.	Parent=Os02t0574600-01
Chr02	irgsp1_rep	mRNA	22044059	22045469	.	+	.	ID=Os02t0574701-00;Name=Os02t0574701-00;Locus_id=Os02g0574701;Note=Hypothetical conserved gene.;Transcript_evidence=BT068550 (DDBJ);ORF_evidence=C4J255 (UniProt);TENOR=Os02t0574701-00;KEGG=Os02t0574701-00
Chr02	irgsp1_rep	five_prime_UTR	22044059	22044117	.	+	.	Parent=Os02t0574701-00
Chr02	irgsp1_rep	CDS	22044118	22044340	.	+	0	Parent=Os02t0574701-00
Chr02	irgsp1_rep	CDS	22044655	22044671	.	+	2	Parent=Os02t0574701-00
Chr02	irgsp1_rep	three_prime_UTR	22044672	22045000	.	+	.	Parent=Os02t0574701-00
Chr02	irgsp1_rep	three_prime_UTR	22045320	22045469	.	+	.	Parent=Os02t0574701-00
Chr02	irgsp1_rep	mRNA	22057873	22058611	.	+	.	ID=Os02t0574800-01;Name=Os02t0574800-01;Locus_id=Os02g0574800;CGSNL Gene Symbol=EIL5;CGSNL Gene Name=ETHYLENE INSENSITIVE-LIKE GENE 5;Oryzabase Gene Symbol Synonym(s)=OsEIL5;Oryzabase Gene Name Synonym(s)=EIN3-like protein 5%2C ETHYLENE INSENSITIVE3-LIKE 5%2C EIN3-LIKE 5;Note=Ethylene insensitive 3 domain containing protein.;Transcript_evidence=AK108451 (DDBJ%2C Best hit);ORF_evidence=B9F0P7 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Ethylene insensitive 3 (IPR006957),Ethylene insensitive 3-like protein%2C DNA-binding domain (IPR023278);NIAS_FLcDNA=002-143-C09;Oryzabase=6129;TENOR=Os02t0574800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	22057873	22058442	.	+	0	Parent=Os02t0574800-01
Chr02	irgsp1_rep	three_prime_UTR	22058443	22058611	.	+	.	Parent=Os02t0574800-01
Chr02	irgsp1_rep	mRNA	22060846	22063367	.	+	.	ID=Os02t0574900-01;Name=Os02t0574900-01;Locus_id=Os02g0574900;Oryzabase Gene Symbol Synonym(s)=OsFbox098%2C OsFbox98%2C Os_F0174;Oryzabase Gene Name Synonym(s)=F-box protein 98;Note=Kelch-type beta propeller domain containing protein.;Transcript_evidence=AK073087 (DDBJ%2C Best hit),AK287831 (DDBJ%2C Best hit);ORF_evidence=B6SWC5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Kelch repeat type 1 (IPR006652),Galactose oxidase%2C beta-propeller (IPR015916),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033023M04,J065186J23;Oryzabase=16891;Expression=AK073087;TENOR=Os02t0574900-01;KEGG=Os02t0574900-01
Chr02	irgsp1_rep	five_prime_UTR	22060846	22061003	.	+	.	Parent=Os02t0574900-01
Chr02	irgsp1_rep	five_prime_UTR	22061584	22061658	.	+	.	Parent=Os02t0574900-01
Chr02	irgsp1_rep	CDS	22061659	22063041	.	+	0	Parent=Os02t0574900-01
Chr02	irgsp1_rep	three_prime_UTR	22063042	22063367	.	+	.	Parent=Os02t0574900-01
Chr02	irgsp1_rep	mRNA	22064966	22065592	.	-	.	ID=Os02t0575000-01;Name=Os02t0575000-01;Locus_id=Os02g0575000;Note=Conserved hypothetical protein.;Transcript_evidence=AK121198 (DDBJ%2C Best hit);ORF_evidence=A2X6D1 (UniProt);NIAS_FLcDNA=J023087D21;Expression=AK121198;TENOR=Os02t0575000-01;KEGG=Os02t0575000-01
Chr02	irgsp1_rep	five_prime_UTR	22065496	22065592	.	-	.	Parent=Os02t0575000-01
Chr02	irgsp1_rep	CDS	22065229	22065495	.	-	0	Parent=Os02t0575000-01
Chr02	irgsp1_rep	three_prime_UTR	22064966	22065228	.	-	.	Parent=Os02t0575000-01
Chr02	irgsp1_rep	mRNA	22068014	22070683	.	-	.	ID=Os02t0575200-01;Name=Os02t0575200-01;Locus_id=Os02g0575200;Note=DNA/pantothenate metabolism flavoprotein%2C C-terminal domain containing protein.;Transcript_evidence=AK069567 (DDBJ%2C Best hit);ORF_evidence=NP_001150240.1 (RefSeq);InterPro=DNA/pantothenate metabolism flavoprotein%2C C-terminal (IPR007085);NIAS_FLcDNA=J023021M06;Expression=AK069567;TENOR=Os02t0575200-01;KEGG=Os02t0575200-01
Chr02	irgsp1_rep	five_prime_UTR	22070392	22070683	.	-	.	Parent=Os02t0575200-01
Chr02	irgsp1_rep	CDS	22070277	22070391	.	-	0	Parent=Os02t0575200-01
Chr02	irgsp1_rep	CDS	22070043	22070172	.	-	2	Parent=Os02t0575200-01
Chr02	irgsp1_rep	CDS	22069667	22069711	.	-	1	Parent=Os02t0575200-01
Chr02	irgsp1_rep	CDS	22069397	22069482	.	-	1	Parent=Os02t0575200-01
Chr02	irgsp1_rep	CDS	22069264	22069316	.	-	2	Parent=Os02t0575200-01
Chr02	irgsp1_rep	CDS	22069130	22069189	.	-	0	Parent=Os02t0575200-01
Chr02	irgsp1_rep	CDS	22068945	22069046	.	-	0	Parent=Os02t0575200-01
Chr02	irgsp1_rep	CDS	22068667	22068786	.	-	0	Parent=Os02t0575200-01
Chr02	irgsp1_rep	CDS	22068299	22068553	.	-	0	Parent=Os02t0575200-01
Chr02	irgsp1_rep	three_prime_UTR	22068014	22068298	.	-	.	Parent=Os02t0575200-01
Chr02	irgsp1_rep	mRNA	22076710	22076757	.	-	.	ID=Os02t0575425-00;Name=Os02t0575425-00;Locus_id=Os02g0575425;Note=Non-protein coding transcript.;Transcript_evidence=X02683 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0575425-00
Chr02	irgsp1_rep	exon	22076710	22076757	.	-	.	Parent=Os02t0575425-00
Chr02	irgsp1_rep	mRNA	22077489	22085057	.	+	.	ID=Os02t0575500-01;Name=Os02t0575500-01;Locus_id=Os02g0575500;RAP-DB Gene Symbol Synonym(s)=OsABC1-2;Oryzabase Gene Symbol Synonym(s)=OsABC1-2%2C OsAbc1-2;Oryzabase Gene Name Synonym(s)=ABC1 domain-containing gene 2;Note=Abc1 kinase family protein%2C Tolerance to dark-induced stress%2C Regulation of dark-induced senescence;Transcript_evidence=AK099974;ORF_evidence=B9F0P9;InterPro=Protein kinase-like domain superfamily (IPR011009),UbiB domain (IPR004147);NIAS_FLcDNA=J013128D08;Manual Curation=July 16%2C 2020;Literature_PMID=22548231;Oryzabase=11453;Expression=AK099974;TENOR=Os02t0575500-01;KEGG=Os02t0575500-01;Subcellular location=chloroplast envelope (GO:0009941)
Chr02	irgsp1_rep	five_prime_UTR	22077489	22077566	.	+	.	Parent=Os02t0575500-01
Chr02	irgsp1_rep	CDS	22077567	22078052	.	+	0	Parent=Os02t0575500-01
Chr02	irgsp1_rep	CDS	22079115	22079250	.	+	0	Parent=Os02t0575500-01
Chr02	irgsp1_rep	CDS	22079766	22079932	.	+	2	Parent=Os02t0575500-01
Chr02	irgsp1_rep	CDS	22080054	22080174	.	+	0	Parent=Os02t0575500-01
Chr02	irgsp1_rep	CDS	22080267	22080367	.	+	2	Parent=Os02t0575500-01
Chr02	irgsp1_rep	CDS	22080515	22080613	.	+	0	Parent=Os02t0575500-01
Chr02	irgsp1_rep	CDS	22081119	22081229	.	+	0	Parent=Os02t0575500-01
Chr02	irgsp1_rep	CDS	22081316	22081395	.	+	0	Parent=Os02t0575500-01
Chr02	irgsp1_rep	CDS	22081487	22081556	.	+	1	Parent=Os02t0575500-01
Chr02	irgsp1_rep	CDS	22082499	22082572	.	+	0	Parent=Os02t0575500-01
Chr02	irgsp1_rep	CDS	22082704	22082773	.	+	1	Parent=Os02t0575500-01
Chr02	irgsp1_rep	CDS	22082857	22082945	.	+	0	Parent=Os02t0575500-01
Chr02	irgsp1_rep	CDS	22083055	22083179	.	+	1	Parent=Os02t0575500-01
Chr02	irgsp1_rep	CDS	22083293	22083373	.	+	2	Parent=Os02t0575500-01
Chr02	irgsp1_rep	CDS	22083455	22083515	.	+	2	Parent=Os02t0575500-01
Chr02	irgsp1_rep	CDS	22083609	22083661	.	+	1	Parent=Os02t0575500-01
Chr02	irgsp1_rep	CDS	22083780	22083880	.	+	2	Parent=Os02t0575500-01
Chr02	irgsp1_rep	CDS	22083998	22084087	.	+	0	Parent=Os02t0575500-01
Chr02	irgsp1_rep	CDS	22084524	22084583	.	+	0	Parent=Os02t0575500-01
Chr02	irgsp1_rep	CDS	22084679	22084795	.	+	0	Parent=Os02t0575500-01
Chr02	irgsp1_rep	three_prime_UTR	22084796	22085057	.	+	.	Parent=Os02t0575500-01
Chr02	irgsp1_rep	mRNA	22081115	22085030	.	+	.	ID=Os02t0575500-02;Name=Os02t0575500-02;Locus_id=Os02g0575500;Oryzabase Gene Symbol Synonym(s)=OsABC1-2%2C OsAbc1-2;Oryzabase Gene Name Synonym(s)=ABC1 domain-containing gene 2;Note=Similar to ATATH13.;Transcript_evidence=AK058407 (DDBJ%2C Best hit);ORF_evidence=D2XP29 (UniProt);GO=Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=ABC-1 (IPR004147),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=001-015-B12;Oryzabase=11453;Expression=AK058407;TENOR=Os02t0575500-02;KEGG=Os02t0575500-02
Chr02	irgsp1_rep	five_prime_UTR	22081115	22081115	.	+	.	Parent=Os02t0575500-02
Chr02	irgsp1_rep	CDS	22081116	22081229	.	+	0	Parent=Os02t0575500-02
Chr02	irgsp1_rep	CDS	22081316	22081395	.	+	0	Parent=Os02t0575500-02
Chr02	irgsp1_rep	CDS	22081487	22081556	.	+	1	Parent=Os02t0575500-02
Chr02	irgsp1_rep	CDS	22082499	22082572	.	+	0	Parent=Os02t0575500-02
Chr02	irgsp1_rep	CDS	22082704	22082773	.	+	1	Parent=Os02t0575500-02
Chr02	irgsp1_rep	CDS	22082857	22082945	.	+	0	Parent=Os02t0575500-02
Chr02	irgsp1_rep	CDS	22083055	22083179	.	+	1	Parent=Os02t0575500-02
Chr02	irgsp1_rep	CDS	22083293	22083373	.	+	2	Parent=Os02t0575500-02
Chr02	irgsp1_rep	CDS	22083455	22083515	.	+	2	Parent=Os02t0575500-02
Chr02	irgsp1_rep	CDS	22083609	22083661	.	+	1	Parent=Os02t0575500-02
Chr02	irgsp1_rep	CDS	22083780	22083880	.	+	2	Parent=Os02t0575500-02
Chr02	irgsp1_rep	CDS	22083998	22084087	.	+	0	Parent=Os02t0575500-02
Chr02	irgsp1_rep	CDS	22084524	22084583	.	+	0	Parent=Os02t0575500-02
Chr02	irgsp1_rep	CDS	22084679	22084795	.	+	0	Parent=Os02t0575500-02
Chr02	irgsp1_rep	three_prime_UTR	22084796	22085030	.	+	.	Parent=Os02t0575500-02
Chr02	irgsp1_rep	mRNA	22096140	22100732	.	+	.	ID=Os02t0575700-01;Name=Os02t0575700-01;Locus_id=Os02g0575700;CGSNL Gene Symbol=IIP3;CGSNL Gene Name=ILA1 INTERACTING PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=IIP3;Oryzabase Gene Name Synonym(s)=ILA1 interacting protein 3;Note=Similar to OSIGBa0097P08.1 protein.;Transcript_evidence=AK105763 (DDBJ%2C Best hit);ORF_evidence=Q01JK4 (UniProt);NIAS_FLcDNA=001-202-D10;Oryzabase=10224;Expression=AK105763;TENOR=Os02t0575700-01;KEGG=Os02t0575700-01
Chr02	irgsp1_rep	five_prime_UTR	22096140	22096193	.	+	.	Parent=Os02t0575700-01
Chr02	irgsp1_rep	five_prime_UTR	22098153	22098508	.	+	.	Parent=Os02t0575700-01
Chr02	irgsp1_rep	CDS	22098509	22100476	.	+	0	Parent=Os02t0575700-01
Chr02	irgsp1_rep	three_prime_UTR	22100477	22100732	.	+	.	Parent=Os02t0575700-01
Chr02	irgsp1_rep	mRNA	22102488	22105007	.	+	.	ID=Os02t0575800-01;Name=Os02t0575800-01;Locus_id=Os02g0575800;Note=Aldose-1-epimerase domain containing protein.;Transcript_evidence=AK109600 (DDBJ%2C Best hit);ORF_evidence=B6SUB8 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: hexose metabolic process (GO:0019318),Molecular Function: catalytic activity (GO:0003824),Molecular Function: isomerase activity (GO:0016853),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Aldose 1-epimerase (IPR008183),Glycoside hydrolase-type carbohydrate-binding (IPR011013),Glycoside hydrolase-type carbohydrate-binding%2C subgroup (IPR014718),Aldose 1-epimerase%2C subgroup (IPR015443);NIAS_FLcDNA=002-137-E04;Expression=AK109600;TENOR=Os02t0575800-01;KEGG=Os02t0575800-01 (EC:5.1.3.3)
Chr02	irgsp1_rep	five_prime_UTR	22102488	22102519	.	+	.	Parent=Os02t0575800-01
Chr02	irgsp1_rep	CDS	22102520	22102718	.	+	0	Parent=Os02t0575800-01
Chr02	irgsp1_rep	CDS	22102902	22102951	.	+	2	Parent=Os02t0575800-01
Chr02	irgsp1_rep	CDS	22103145	22103268	.	+	0	Parent=Os02t0575800-01
Chr02	irgsp1_rep	CDS	22103417	22103524	.	+	2	Parent=Os02t0575800-01
Chr02	irgsp1_rep	CDS	22104217	22104872	.	+	2	Parent=Os02t0575800-01
Chr02	irgsp1_rep	three_prime_UTR	22104873	22105007	.	+	.	Parent=Os02t0575800-01
Chr02	irgsp1_rep	mRNA	22110140	22117656	.	+	.	ID=Os02t0575900-01;Name=Os02t0575900-01;Locus_id=Os02g0575900;CGSNL Gene Symbol=EXO70FX6;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX6;Oryzabase Gene Symbol Synonym(s)=OsEXO70FX6%2C OsExo70FX6%2C OrysaFX6_Exo70;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein FX6;Note=Exo70 exocyst complex subunit family protein.;Transcript_evidence=AK102188 (DDBJ%2C Best hit);ORF_evidence=B8AEB8 (UniProt);GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exo70 exocyst complex subunit (IPR004140),Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=J033086P19;Oryzabase=20348;Expression=AK102188;TENOR=Os02t0575900-01;KEGG=Os02t0575900-01
Chr02	irgsp1_rep	five_prime_UTR	22110140	22110264	.	+	.	Parent=Os02t0575900-01
Chr02	irgsp1_rep	CDS	22110265	22110452	.	+	0	Parent=Os02t0575900-01
Chr02	irgsp1_rep	CDS	22112396	22113172	.	+	1	Parent=Os02t0575900-01
Chr02	irgsp1_rep	CDS	22116168	22117305	.	+	1	Parent=Os02t0575900-01
Chr02	irgsp1_rep	three_prime_UTR	22117306	22117656	.	+	.	Parent=Os02t0575900-01
Chr02	irgsp1_rep	mRNA	22140674	22141994	.	-	.	ID=Os02t0576400-01;Name=Os02t0576400-01;Locus_id=Os02g0576400;Oryzabase Gene Symbol Synonym(s)=OsEnS-39;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 39;Note=Conserved hypothetical protein.;Transcript_evidence=AK107966 (DDBJ%2C Best hit);ORF_evidence=A2X6E4 (UniProt);NIAS_FLcDNA=002-135-D02;Oryzabase=18370;Expression=AK107966;TENOR=Os02t0576400-01;KEGG=Os02t0576400-01
Chr02	irgsp1_rep	five_prime_UTR	22141893	22141994	.	-	.	Parent=Os02t0576400-01
Chr02	irgsp1_rep	CDS	22141752	22141892	.	-	0	Parent=Os02t0576400-01
Chr02	irgsp1_rep	CDS	22141405	22141455	.	-	0	Parent=Os02t0576400-01
Chr02	irgsp1_rep	CDS	22141035	22141202	.	-	0	Parent=Os02t0576400-01
Chr02	irgsp1_rep	three_prime_UTR	22140674	22141034	.	-	.	Parent=Os02t0576400-01
Chr02	irgsp1_rep	mRNA	22146429	22150147	.	-	.	ID=Os02t0576600-01;Name=Os02t0576600-01;Locus_id=Os02g0576600;CGSNL Gene Symbol=SUT5;CGSNL Gene Name=SUCROSE TRANSPORTER 5;Oryzabase Gene Symbol Synonym(s)=OsSUT5(t)%2C OsSUT5Z%2C OsSUT5;Oryzabase Gene Name Synonym(s)=sucrose transporter5(t)%2C sucrose transporter 5Z;Note=Sucrose transporter.;Transcript_evidence=AK073105 (DDBJ%2C Best hit);ORF_evidence=Q69JW3 (UniProt);GO=Biological Process: sucrose transport (GO:0015770),Cellular Component: integral to plasma membrane (GO:0005887),Molecular Function: sucrose transmembrane transporter activity (GO:0008515);InterPro=Sucrose/H+ symporter%2C plant (IPR005989),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J033024A07;Oryzabase=2211;Expression=AK073105;TENOR=Os02t0576600-01;KEGG=Os02t0576600-01
Chr02	irgsp1_rep	five_prime_UTR	22150047	22150147	.	-	.	Parent=Os02t0576600-01
Chr02	irgsp1_rep	CDS	22149807	22150046	.	-	0	Parent=Os02t0576600-01
Chr02	irgsp1_rep	CDS	22149567	22149632	.	-	0	Parent=Os02t0576600-01
Chr02	irgsp1_rep	CDS	22149199	22149297	.	-	0	Parent=Os02t0576600-01
Chr02	irgsp1_rep	CDS	22148996	22149060	.	-	0	Parent=Os02t0576600-01
Chr02	irgsp1_rep	CDS	22148823	22148907	.	-	1	Parent=Os02t0576600-01
Chr02	irgsp1_rep	CDS	22148667	22148700	.	-	0	Parent=Os02t0576600-01
Chr02	irgsp1_rep	CDS	22148451	22148553	.	-	2	Parent=Os02t0576600-01
Chr02	irgsp1_rep	CDS	22148268	22148343	.	-	1	Parent=Os02t0576600-01
Chr02	irgsp1_rep	CDS	22147903	22148082	.	-	0	Parent=Os02t0576600-01
Chr02	irgsp1_rep	CDS	22147336	22147716	.	-	0	Parent=Os02t0576600-01
Chr02	irgsp1_rep	CDS	22147170	22147233	.	-	0	Parent=Os02t0576600-01
Chr02	irgsp1_rep	CDS	22147029	22147072	.	-	2	Parent=Os02t0576600-01
Chr02	irgsp1_rep	CDS	22146755	22146925	.	-	0	Parent=Os02t0576600-01
Chr02	irgsp1_rep	three_prime_UTR	22146429	22146754	.	-	.	Parent=Os02t0576600-01
Chr02	irgsp1_rep	mRNA	22151598	22156041	.	-	.	ID=Os02t0576700-01;Name=Os02t0576700-01;Locus_id=Os02g0576700;RAP-DB Gene Symbol Synonym(s)=OsNAPL6;Oryzabase Gene Symbol Synonym(s)=OsNAPL6%2C NAPL6;Note=Nucleosome assembly protein (NAP) family protein%2C H3/H4 histone chaperone%2C Abiotic stress response and adaptation;Transcript_evidence=AK102294,AK059578;ORF_evidence=Q69JW2,B8AEC1 (indica);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleus (GO:0005634);InterPro=Nucleosome assembly protein (NAP) (IPR002164);NIAS_FLcDNA=J033089L07, 001-030-A12;Manual Curation=August 4%2C 2016;Literature_PMID=27342307;Oryzabase=21181;Expression=AK102294;TENOR=Os02t0576700-01;KEGG=Os02t0576700-01
Chr02	irgsp1_rep	five_prime_UTR	22155899	22156041	.	-	.	Parent=Os02t0576700-01
Chr02	irgsp1_rep	CDS	22155761	22155898	.	-	0	Parent=Os02t0576700-01
Chr02	irgsp1_rep	CDS	22154542	22154664	.	-	0	Parent=Os02t0576700-01
Chr02	irgsp1_rep	CDS	22154393	22154443	.	-	0	Parent=Os02t0576700-01
Chr02	irgsp1_rep	CDS	22154182	22154253	.	-	0	Parent=Os02t0576700-01
Chr02	irgsp1_rep	CDS	22153991	22154104	.	-	0	Parent=Os02t0576700-01
Chr02	irgsp1_rep	CDS	22153853	22153911	.	-	0	Parent=Os02t0576700-01
Chr02	irgsp1_rep	CDS	22152603	22152663	.	-	1	Parent=Os02t0576700-01
Chr02	irgsp1_rep	CDS	22152448	22152504	.	-	0	Parent=Os02t0576700-01
Chr02	irgsp1_rep	CDS	22152332	22152367	.	-	0	Parent=Os02t0576700-01
Chr02	irgsp1_rep	CDS	22152008	22152055	.	-	0	Parent=Os02t0576700-01
Chr02	irgsp1_rep	three_prime_UTR	22151598	22152007	.	-	.	Parent=Os02t0576700-01
Chr02	irgsp1_rep	mRNA	22161327	22161659	.	+	.	ID=Os02t0576900-00;Name=Os02t0576900-00;Locus_id=Os02g0576900;Note=Hypothetical conserved gene.;Transcript_evidence=AB332054 (DDBJ%2C Best hit);ORF_evidence=F2QA89 (UniProt);TENOR=Os02t0576900-00;KEGG=Os02t0576900-00
Chr02	irgsp1_rep	CDS	22161327	22161659	.	+	0	Parent=Os02t0576900-00
Chr02	irgsp1_rep	mRNA	22163299	22167298	.	-	.	ID=Os02t0577100-01;Name=Os02t0577100-01;Locus_id=Os02g0577100;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK071239 (DDBJ%2C Best hit);ORF_evidence=NP_001150855.1 (RefSeq);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-CH-type (IPR011016),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Protein of unknown function DUF3675 (IPR022143);NIAS_FLcDNA=J023083D22;Expression=AK071239;TENOR=Os02t0577100-01;KEGG=Os02t0577100-01
Chr02	irgsp1_rep	five_prime_UTR	22167266	22167298	.	-	.	Parent=Os02t0577100-01
Chr02	irgsp1_rep	five_prime_UTR	22166935	22166996	.	-	.	Parent=Os02t0577100-01
Chr02	irgsp1_rep	CDS	22166770	22166934	.	-	0	Parent=Os02t0577100-01
Chr02	irgsp1_rep	CDS	22165977	22166048	.	-	0	Parent=Os02t0577100-01
Chr02	irgsp1_rep	CDS	22165330	22165394	.	-	0	Parent=Os02t0577100-01
Chr02	irgsp1_rep	CDS	22165037	22165196	.	-	1	Parent=Os02t0577100-01
Chr02	irgsp1_rep	CDS	22164747	22164827	.	-	0	Parent=Os02t0577100-01
Chr02	irgsp1_rep	CDS	22164484	22164573	.	-	0	Parent=Os02t0577100-01
Chr02	irgsp1_rep	CDS	22163752	22163871	.	-	0	Parent=Os02t0577100-01
Chr02	irgsp1_rep	three_prime_UTR	22163299	22163751	.	-	.	Parent=Os02t0577100-01
Chr02	irgsp1_rep	mRNA	22175977	22178701	.	+	.	ID=Os02t0577300-00;Name=Os02t0577300-00;Locus_id=Os02g0577300;Note=Similar to predicted protein.;Transcript_evidence=ab initio prediction;ORF_evidence=XP_002890640.1 (RefSeq);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: sugar binding (GO:0005529),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Galectin%2C carbohydrate recognition domain (IPR001079),Glycosyl transferase%2C family 31 (IPR002659),Concanavalin A-like lectin/glucanase (IPR008985),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320);TENOR=Os02t0577300-00;KEGG=Os02t0577300-00
Chr02	irgsp1_rep	CDS	22175977	22176739	.	+	0	Parent=Os02t0577300-00
Chr02	irgsp1_rep	CDS	22176810	22177024	.	+	2	Parent=Os02t0577300-00
Chr02	irgsp1_rep	CDS	22177112	22177393	.	+	0	Parent=Os02t0577300-00
Chr02	irgsp1_rep	CDS	22177477	22177605	.	+	0	Parent=Os02t0577300-00
Chr02	irgsp1_rep	CDS	22177695	22177874	.	+	0	Parent=Os02t0577300-00
Chr02	irgsp1_rep	CDS	22178145	22178252	.	+	0	Parent=Os02t0577300-00
Chr02	irgsp1_rep	CDS	22178495	22178701	.	+	0	Parent=Os02t0577300-00
Chr02	irgsp1_rep	mRNA	22175280	22177635	.	-	.	ID=Os02t0577400-01;Name=Os02t0577400-01;Locus_id=Os02g0577400;Note=Hypothetical protein.;Transcript_evidence=AK062584 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-100-D10;Expression=AK062584;TENOR=Os02t0577400-01;KEGG=Os02t0577400-01
Chr02	irgsp1_rep	five_prime_UTR	22177536	22177635	.	-	.	Parent=Os02t0577400-01
Chr02	irgsp1_rep	CDS	22177486	22177535	.	-	0	Parent=Os02t0577400-01
Chr02	irgsp1_rep	CDS	22177069	22177390	.	-	1	Parent=Os02t0577400-01
Chr02	irgsp1_rep	three_prime_UTR	22175280	22177068	.	-	.	Parent=Os02t0577400-01
Chr02	irgsp1_rep	mRNA	22180079	22181019	.	-	.	ID=Os02t0577501-00;Name=Os02t0577501-00;Locus_id=Os02g0577501;Note=Mitochodrial transcription termination factor-related family protein.;Transcript_evidence=BT041997 (DDBJ);ORF_evidence=F1DK12 (UniProt);InterPro=Mitochodrial transcription termination factor-related (IPR003690);TENOR=Os02t0577501-00;KEGG=Os02t0577501-00
Chr02	irgsp1_rep	CDS	22180171	22181019	.	-	0	Parent=Os02t0577501-00
Chr02	irgsp1_rep	three_prime_UTR	22180079	22180170	.	-	.	Parent=Os02t0577501-00
Chr02	irgsp1_rep	mRNA	22202768	22204253	.	-	.	ID=Os02t0577600-00;Name=Os02t0577600-00;Locus_id=Os02g0577600;Note=Hypothetical protein.;Transcript_evidence=AK356492 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0577600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	22203365	22204253	.	-	.	Parent=Os02t0577600-00
Chr02	irgsp1_rep	CDS	22203358	22203364	.	-	0	Parent=Os02t0577600-00
Chr02	irgsp1_rep	CDS	22202768	22203191	.	-	2	Parent=Os02t0577600-00
Chr02	irgsp1_rep	mRNA	22202698	22204302	.	+	.	ID=Os02t0577700-00;Name=Os02t0577700-00;Locus_id=Os02g0577700;Note=Similar to H0815C01.4 protein.;Transcript_evidence=AK369181 (DDBJ);ORF_evidence=Q01J92 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os02t0577700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	22202698	22203267	.	+	0	Parent=Os02t0577700-00
Chr02	irgsp1_rep	CDS	22203379	22204302	.	+	0	Parent=Os02t0577700-00
Chr02	irgsp1_rep	mRNA	22210794	22211386	.	+	.	ID=Os02t0577900-01;Name=Os02t0577900-01;Locus_id=Os02g0577900;Note=Conserved hypothetical protein.;Transcript_evidence=AK241467 (DDBJ%2C Best hit);ORF_evidence=NP_001173035.1 (RefSeq);NIAS_FLcDNA=J065164K11;TENOR=Os02t0577900-01;KEGG=Os02t0577900-01
Chr02	irgsp1_rep	five_prime_UTR	22210794	22210927	.	+	.	Parent=Os02t0577900-01
Chr02	irgsp1_rep	CDS	22210928	22211290	.	+	0	Parent=Os02t0577900-01
Chr02	irgsp1_rep	three_prime_UTR	22211291	22211386	.	+	.	Parent=Os02t0577900-01
Chr02	irgsp1_rep	mRNA	22215072	22216729	.	-	.	ID=Os02t0578000-01;Name=Os02t0578000-01;Locus_id=Os02g0578000;Note=Hypothetical protein.;Transcript_evidence=AK064085 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-100-B11;TENOR=Os02t0578000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	22216067	22216729	.	-	.	Parent=Os02t0578000-01
Chr02	irgsp1_rep	five_prime_UTR	22215451	22215913	.	-	.	Parent=Os02t0578000-01
Chr02	irgsp1_rep	CDS	22215072	22215450	.	-	0	Parent=Os02t0578000-01
Chr02	irgsp1_rep	mRNA	22229412	22231397	.	-	.	ID=Os02t0578201-01;Name=Os02t0578201-01;Locus_id=Os02g0578201;Note=Hypothetical protein.;Transcript_evidence=AK241064 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065065K19;TENOR=Os02t0578201-01;KEGG=Os02t0578201-01
Chr02	irgsp1_rep	five_prime_UTR	22231239	22231397	.	-	.	Parent=Os02t0578201-01
Chr02	irgsp1_rep	CDS	22230708	22231238	.	-	0	Parent=Os02t0578201-01
Chr02	irgsp1_rep	three_prime_UTR	22229412	22230707	.	-	.	Parent=Os02t0578201-01
Chr02	irgsp1_rep	mRNA	22229575	22231423	.	+	.	ID=Os02t0578300-01;Name=Os02t0578300-01;Locus_id=Os02g0578300;Note=Similar to H0815C01.4 protein.;Transcript_evidence=AK105275 (DDBJ%2C Best hit);ORF_evidence=Q01J92 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=001-116-A04;TENOR=Os02t0578300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	22229575	22229714	.	+	.	Parent=Os02t0578300-01
Chr02	irgsp1_rep	CDS	22229715	22230231	.	+	0	Parent=Os02t0578300-01
Chr02	irgsp1_rep	CDS	22230317	22231281	.	+	2	Parent=Os02t0578300-01
Chr02	irgsp1_rep	three_prime_UTR	22231282	22231423	.	+	.	Parent=Os02t0578300-01
Chr02	irgsp1_rep	mRNA	22233461	22234247	.	+	.	ID=Os02t0578366-00;Name=Os02t0578366-00;Locus_id=Os02g0578366;Note=UPF0497 membrane protein LOC_Os02g36845.;Transcript_evidence=FP091536 (DDBJ);ORF_evidence=C5Z7E3 (UniProt);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup (IPR006459),Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);TENOR=Os02t0578366-00;KEGG=Os02t0578366-00
Chr02	irgsp1_rep	CDS	22233461	22233723	.	+	0	Parent=Os02t0578366-00
Chr02	irgsp1_rep	CDS	22233821	22233944	.	+	1	Parent=Os02t0578366-00
Chr02	irgsp1_rep	CDS	22234029	22234247	.	+	0	Parent=Os02t0578366-00
Chr02	irgsp1_rep	mRNA	22234374	22235352	.	-	.	ID=Os02t0578400-01;Name=Os02t0578400-01;Locus_id=Os02g0578400;Note=Photosystem II oxygen evolving complex protein PsbQ family protein.;Transcript_evidence=AK287674 (DDBJ%2C Best hit);ORF_evidence=B6SZC8 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: oxygen evolving complex (GO:0009654),Cellular Component: extrinsic to membrane (GO:0019898),Molecular Function: calcium ion binding (GO:0005509);InterPro=Photosystem II PsbQ%2C oxygen evolving complex (IPR008797),PsbQ-like domain (IPR023222);NIAS_FLcDNA=J065121F23;TENOR=Os02t0578400-01;KEGG=Os02t0578400-01
Chr02	irgsp1_rep	five_prime_UTR	22235323	22235352	.	-	.	Parent=Os02t0578400-01
Chr02	irgsp1_rep	CDS	22234744	22235322	.	-	0	Parent=Os02t0578400-01
Chr02	irgsp1_rep	CDS	22234499	22234597	.	-	0	Parent=Os02t0578400-01
Chr02	irgsp1_rep	three_prime_UTR	22234374	22234498	.	-	.	Parent=Os02t0578400-01
Chr02	irgsp1_rep	mRNA	22234705	22238120	.	+	.	ID=Os02t0578500-00;Name=Os02t0578500-00;Locus_id=Os02g0578500;Note=Similar to BZIP transcription factor family protein%2C expressed.;Transcript_evidence=AK359622 (DDBJ);ORF_evidence=Q53QH0 (UniProt);TENOR=Os02t0578500-00
Chr02	irgsp1_rep	CDS	22234705	22235211	.	+	0	Parent=Os02t0578500-00
Chr02	irgsp1_rep	CDS	22237662	22238120	.	+	0	Parent=Os02t0578500-00
Chr02	irgsp1_rep	mRNA	22245005	22247538	.	+	.	ID=Os02t0578800-01;Name=Os02t0578800-01;Locus_id=Os02g0578800;Note=Protein of unknown function DUF962 family protein.;Transcript_evidence=AK070066 (DDBJ%2C Best hit);ORF_evidence=B6TSS0 (UniProt);InterPro=Protein of unknown function DUF962 (IPR009305);NIAS_FLcDNA=J023040N16;Expression=AK070066;TENOR=Os02t0578800-01;KEGG=Os02t0578800-01
Chr02	irgsp1_rep	five_prime_UTR	22245005	22245076	.	+	.	Parent=Os02t0578800-01
Chr02	irgsp1_rep	CDS	22245077	22245388	.	+	0	Parent=Os02t0578800-01
Chr02	irgsp1_rep	CDS	22246820	22246880	.	+	0	Parent=Os02t0578800-01
Chr02	irgsp1_rep	CDS	22246953	22247026	.	+	2	Parent=Os02t0578800-01
Chr02	irgsp1_rep	CDS	22247121	22247237	.	+	0	Parent=Os02t0578800-01
Chr02	irgsp1_rep	three_prime_UTR	22247238	22247538	.	+	.	Parent=Os02t0578800-01
Chr02	irgsp1_rep	mRNA	22258846	22260658	.	+	.	ID=Os02t0579000-01;Name=Os02t0579000-01;Locus_id=Os02g0579000;CGSNL Gene Symbol=NAC1;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsNAC1%2C ONAC027%2C ONAC27%2C NAC27%2C OMTN1%2C OsNAC1/ONAC027%2C DLN60%2C OsDLN60;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 027%2C NAC domain-containing protein 27%2C Oryza miR164-targeted NAC1%2C miR164-targeted NAC1%2C DLN repressor 60%2C DLN motif protein 60;Note=No apical meristem (NAM) protein domain containing protein.;Transcript_evidence=AK108080 (DDBJ%2C Best hit);ORF_evidence=Q8H0I5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=002-138-E10;Oryzabase=6228;Expression=AK108080;TENOR=Os02t0579000-01;KEGG=Os02t0579000-01
Chr02	irgsp1_rep	five_prime_UTR	22258846	22258888	.	+	.	Parent=Os02t0579000-01
Chr02	irgsp1_rep	five_prime_UTR	22259067	22259075	.	+	.	Parent=Os02t0579000-01
Chr02	irgsp1_rep	CDS	22259076	22259328	.	+	0	Parent=Os02t0579000-01
Chr02	irgsp1_rep	CDS	22259478	22259743	.	+	2	Parent=Os02t0579000-01
Chr02	irgsp1_rep	CDS	22259838	22259999	.	+	0	Parent=Os02t0579000-01
Chr02	irgsp1_rep	CDS	22260084	22260440	.	+	0	Parent=Os02t0579000-01
Chr02	irgsp1_rep	three_prime_UTR	22260441	22260658	.	+	.	Parent=Os02t0579000-01
Chr02	irgsp1_rep	mRNA	22258833	22260681	.	+	.	ID=Os02t0579000-02;Name=Os02t0579000-02;Locus_id=Os02g0579000;RAP-DB Gene Symbol Synonym(s)=OMTN1%2C OsNAC1%2C ONAC027;RAP-DB Gene Name Synonym(s)=Oryza miR164-targeted NAC1%2C NAC domain-containing protein 1%2C NAC domain-containing protein 27;CGSNL Gene Symbol=NAC1;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsNAC1%2C ONAC027%2C ONAC27%2C NAC27%2C OMTN1%2C OsNAC1/ONAC027%2C DLN60%2C OsDLN60;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 027%2C NAC domain-containing protein 27%2C Oryza miR164-targeted NAC1%2C miR164-targeted NAC1%2C DLN repressor 60%2C DLN motif protein 60;Note=NAC domain-containing protein%2C NAC transcription factor;Transcript_evidence=AB028180;ORF_evidence=Q8H0I5;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=NAC domain superfamily (IPR036093),NAC domain (IPR003441);Manual Curation=January 5%2C 2018;Literature_PMID=24604734,10660065;Oryzabase=6228;Subcellular location=nucleus (GO:0005634)
Chr02	irgsp1_rep	five_prime_UTR	22258833	22258888	.	+	.	Parent=Os02t0579000-02
Chr02	irgsp1_rep	five_prime_UTR	22259067	22259075	.	+	.	Parent=Os02t0579000-02
Chr02	irgsp1_rep	CDS	22259076	22259328	.	+	0	Parent=Os02t0579000-02
Chr02	irgsp1_rep	CDS	22259478	22259743	.	+	2	Parent=Os02t0579000-02
Chr02	irgsp1_rep	CDS	22259835	22260440	.	+	0	Parent=Os02t0579000-02
Chr02	irgsp1_rep	three_prime_UTR	22260441	22260681	.	+	.	Parent=Os02t0579000-02
Chr02	irgsp1_rep	mRNA	22263933	22263980	.	-	.	ID=Os02t0579150-00;Name=Os02t0579150-00;Locus_id=Os02g0579150;Note=Non-protein coding transcript.;Transcript_evidence=X02683 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0579150-00
Chr02	irgsp1_rep	exon	22263933	22263980	.	-	.	Parent=Os02t0579150-00
Chr02	irgsp1_rep	mRNA	22267920	22269974	.	+	.	ID=Os02t0579300-00;Name=Os02t0579300-00;Locus_id=Os02g0579300;Note=Similar to DNA binding protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B6TVL1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);TENOR=Os02t0579300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	22267920	22268055	.	+	0	Parent=Os02t0579300-00
Chr02	irgsp1_rep	CDS	22268932	22269041	.	+	2	Parent=Os02t0579300-00
Chr02	irgsp1_rep	CDS	22269480	22269974	.	+	0	Parent=Os02t0579300-00
Chr02	irgsp1_rep	mRNA	22294657	22301807	.	+	.	ID=Os02t0579600-01;Name=Os02t0579600-01;Locus_id=Os02g0579600;RAP-DB Gene Symbol Synonym(s)=OsMADS27;RAP-DB Gene Name Synonym(s)=MADS-box transcription factor 27;CGSNL Gene Symbol=MADS27;CGSNL Gene Name=MADS BOX GENE 27;Oryzabase Gene Symbol Synonym(s)=OsMADS27%2C MADS-27a%2C OsSTA66%2C OsMADS27a;Oryzabase Gene Name Synonym(s)=MADS box gene27%2C MADS-box transcription factor 27;Note=MADS-box transcription factor%2C Regulation of root development%2C Modulation of salt tolerance;Transcript_evidence=AY177696 (Dongjin);ORF_evidence=Q6EP49;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Biological Process: positive regulation of transcription by RNA polymerase II (GO:0045944),Molecular Function: RNA polymerase II regulatory region sequence-specific DNA binding (GO:0000977),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-binding transcription factor activity (GO:0003700),Molecular Function: protein dimerization activity (GO:0046983),Cellular Component: nucleus (GO:0005634);InterPro=Transcription factor%2C MADS-box superfamily (IPR036879),Transcription factor%2C MADS-box (IPR002100),MADS MEF2-like (IPR033896),Transcription factor%2C K-box (IPR002487);Manual Curation=December 7%2C 2018;Literature_PMID=30466586,14701936;Oryzabase=3093;TENOR=Os02t0579600-00;KEGG=Os02t0579600-00
Chr02	irgsp1_rep	five_prime_UTR	22294657	22294938	.	+	.	Parent=Os02t0579600-01
Chr02	irgsp1_rep	CDS	22294939	22295120	.	+	0	Parent=Os02t0579600-01
Chr02	irgsp1_rep	CDS	22295993	22296071	.	+	1	Parent=Os02t0579600-01
Chr02	irgsp1_rep	CDS	22300415	22300476	.	+	0	Parent=Os02t0579600-01
Chr02	irgsp1_rep	CDS	22300978	22301077	.	+	1	Parent=Os02t0579600-01
Chr02	irgsp1_rep	CDS	22301171	22301212	.	+	0	Parent=Os02t0579600-01
Chr02	irgsp1_rep	CDS	22301305	22301388	.	+	0	Parent=Os02t0579600-01
Chr02	irgsp1_rep	CDS	22301475	22301629	.	+	0	Parent=Os02t0579600-01
Chr02	irgsp1_rep	CDS	22301710	22301728	.	+	1	Parent=Os02t0579600-01
Chr02	irgsp1_rep	three_prime_UTR	22301729	22301807	.	+	.	Parent=Os02t0579600-01
Chr02	irgsp1_rep	mRNA	22311834	22313012	.	-	.	ID=Os02t0579800-01;Name=Os02t0579800-01;Locus_id=Os02g0579800;Oryzabase Gene Symbol Synonym(s)=OsFWL2;Oryzabase Gene Name Synonym(s)=FW2.2-like 2;Note=Similar to Fw2.2.;Transcript_evidence=AK059931 (DDBJ%2C Best hit);ORF_evidence=B6TYV8 (UniProt);InterPro=Uncharacterised protein family Cys-rich (IPR006461);NIAS_FLcDNA=006-210-B09;Oryzabase=13471;Expression=AK059931;TENOR=Os02t0579800-01;KEGG=Os02t0579800-01
Chr02	irgsp1_rep	five_prime_UTR	22312914	22313012	.	-	.	Parent=Os02t0579800-01
Chr02	irgsp1_rep	CDS	22312793	22312913	.	-	0	Parent=Os02t0579800-01
Chr02	irgsp1_rep	CDS	22312406	22312690	.	-	2	Parent=Os02t0579800-01
Chr02	irgsp1_rep	CDS	22312229	22312311	.	-	2	Parent=Os02t0579800-01
Chr02	irgsp1_rep	three_prime_UTR	22311834	22312228	.	-	.	Parent=Os02t0579800-01
Chr02	irgsp1_rep	mRNA	22319856	22321273	.	-	.	ID=Os02t0580000-01;Name=Os02t0580000-01;Locus_id=Os02g0580000;Oryzabase Gene Symbol Synonym(s)=OsFWL3%2C FWL3;Oryzabase Gene Name Synonym(s)=FW2.2-like 3%2C fruit-weight 2.2-like 3;Note=Similar to Cell number regulator 2.;Transcript_evidence=AK111738;ORF_evidence=Q6EP46;InterPro=PLAC8 motif-containing protein (IPR006461);NIAS_FLcDNA=J023047N05;Manual Curation=December 2%2C 2016;Literature_PMID=23793979;Oryzabase=13472;TENOR=Os02t0580000-01
Chr02	irgsp1_rep	five_prime_UTR	22321132	22321273	.	-	.	Parent=Os02t0580000-01
Chr02	irgsp1_rep	CDS	22321062	22321131	.	-	0	Parent=Os02t0580000-01
Chr02	irgsp1_rep	CDS	22320694	22320978	.	-	2	Parent=Os02t0580000-01
Chr02	irgsp1_rep	CDS	22320298	22320380	.	-	2	Parent=Os02t0580000-01
Chr02	irgsp1_rep	three_prime_UTR	22319856	22320297	.	-	.	Parent=Os02t0580000-01
Chr02	irgsp1_rep	mRNA	22319855	22321276	.	-	.	ID=Os02t0580000-02;Name=Os02t0580000-02;Locus_id=Os02g0580000;RAP-DB Gene Symbol Synonym(s)=OsFWL3;RAP-DB Gene Name Synonym(s)=FW2.2-like 3;Oryzabase Gene Symbol Synonym(s)=OsFWL3%2C FWL3;Oryzabase Gene Name Synonym(s)=FW2.2-like 3%2C fruit-weight 2.2-like 3;Note=Fruit-weight 2.2-like protein%2C Negative regulation of grain length;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;InterPro=PLAC8 motif-containing protein (IPR006461);Manual Curation=December 2%2C 2016;Literature_PMID=23793979;Oryzabase=13472
Chr02	irgsp1_rep	five_prime_UTR	22321132	22321276	.	-	.	Parent=Os02t0580000-02
Chr02	irgsp1_rep	CDS	22321062	22321131	.	-	0	Parent=Os02t0580000-02
Chr02	irgsp1_rep	CDS	22320676	22320978	.	-	2	Parent=Os02t0580000-02
Chr02	irgsp1_rep	CDS	22320298	22320380	.	-	2	Parent=Os02t0580000-02
Chr02	irgsp1_rep	three_prime_UTR	22319855	22320297	.	-	.	Parent=Os02t0580000-02
Chr02	irgsp1_rep	mRNA	22327308	22331805	.	-	.	ID=Os02t0580100-01;Name=Os02t0580100-01;Locus_id=Os02g0580100;Note=Protein of unknown function DUF580 family protein.;Transcript_evidence=AK072442 (DDBJ%2C Best hit);ORF_evidence=NP_173921.1 (RefSeq);InterPro=Choline transporter-like (IPR007603);NIAS_FLcDNA=J023111L23;Expression=AK072442;TENOR=Os02t0580100-01;KEGG=Os02t0580100-01
Chr02	irgsp1_rep	five_prime_UTR	22331648	22331805	.	-	.	Parent=Os02t0580100-01
Chr02	irgsp1_rep	CDS	22331046	22331647	.	-	0	Parent=Os02t0580100-01
Chr02	irgsp1_rep	CDS	22329156	22329339	.	-	1	Parent=Os02t0580100-01
Chr02	irgsp1_rep	CDS	22328839	22329063	.	-	0	Parent=Os02t0580100-01
Chr02	irgsp1_rep	CDS	22328601	22328717	.	-	0	Parent=Os02t0580100-01
Chr02	irgsp1_rep	CDS	22328046	22328279	.	-	0	Parent=Os02t0580100-01
Chr02	irgsp1_rep	CDS	22327671	22327880	.	-	0	Parent=Os02t0580100-01
Chr02	irgsp1_rep	three_prime_UTR	22327308	22327670	.	-	.	Parent=Os02t0580100-01
Chr02	irgsp1_rep	mRNA	22333308	22337676	.	+	.	ID=Os02t0580300-01;Name=Os02t0580300-01;Locus_id=Os02g0580300;RAP-DB Gene Symbol Synonym(s)=GF14e;RAP-DB Gene Name Synonym(s)=G-box factor 14-3-3 homolog E;CGSNL Gene Symbol=GID2;CGSNL Gene Name=GIBBERELLIN-INSENSITIVE DWARF 2;Oryzabase Gene Symbol Synonym(s)=gid2%2C GF14e%2C OsGF14e%2C OsGID2%2C 14-3-3e;Oryzabase Gene Name Synonym(s)=gibberellin-insensitive dwarf2%2C GIBBERELLIN INSENSITIVE DWARF2%2C GA-insensitive dwarf 2%2C F-box protein GID2%2C Gibberellin-insensitive dwarf protein 2%2C Protein GIBBERELLIN INSENSITIVE DWARF2%2C G-box factor 14-3-3e protein;Note=14-3-3 protein%2C Negative modulation of cell death and disease resistance;Transcript_evidence=AK066506;ORF_evidence=Q6EUP4;GO=Molecular Function: protein domain specific binding (GO:0019904);InterPro=14-3-3 domain superfamily (IPR036815),14-3-3 protein (IPR000308),14-3-3 domain (IPR023410),14-3-3 protein%2C conserved site (IPR023409);NIAS_FLcDNA=J013071A03;Manual Curation=July 6%2C 2020;Literature_PMID=21793954,16766513;Oryzabase=3022;Expression=AK066506;TENOR=Os02t0580300-01;KEGG=Os02t0580300-01;Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737)
Chr02	irgsp1_rep	five_prime_UTR	22333308	22333339	.	+	.	Parent=Os02t0580300-01
Chr02	irgsp1_rep	five_prime_UTR	22335300	22335341	.	+	.	Parent=Os02t0580300-01
Chr02	irgsp1_rep	CDS	22335342	22335751	.	+	0	Parent=Os02t0580300-01
Chr02	irgsp1_rep	CDS	22335840	22335918	.	+	1	Parent=Os02t0580300-01
Chr02	irgsp1_rep	CDS	22336079	22336201	.	+	0	Parent=Os02t0580300-01
Chr02	irgsp1_rep	CDS	22336863	22336979	.	+	0	Parent=Os02t0580300-01
Chr02	irgsp1_rep	CDS	22337074	22337133	.	+	0	Parent=Os02t0580300-01
Chr02	irgsp1_rep	three_prime_UTR	22337134	22337676	.	+	.	Parent=Os02t0580300-01
Chr02	irgsp1_rep	mRNA	22333316	22337414	.	+	.	ID=Os02t0580300-02;Name=Os02t0580300-02;Locus_id=Os02g0580300;CGSNL Gene Symbol=GID2;CGSNL Gene Name=GIBBERELLIN-INSENSITIVE DWARF 2;Oryzabase Gene Symbol Synonym(s)=gid2%2C GF14e%2C OsGF14e%2C OsGID2%2C 14-3-3e;Oryzabase Gene Name Synonym(s)=gibberellin-insensitive dwarf2%2C GIBBERELLIN INSENSITIVE DWARF2%2C GA-insensitive dwarf 2%2C F-box protein GID2%2C Gibberellin-insensitive dwarf protein 2%2C Protein GIBBERELLIN INSENSITIVE DWARF2%2C G-box factor 14-3-3e protein;Note=Similar to 14-3-3 protein 6.;Transcript_evidence=AK068248 (DDBJ%2C Best hit);ORF_evidence=Q6EUP4 (UniProt);GO=Molecular Function: protein domain specific binding (GO:0019904);InterPro=14-3-3 protein (IPR000308),14-3-3 protein%2C conserved site (IPR023409),14-3-3 domain (IPR023410);NIAS_FLcDNA=J013146A14;Oryzabase=3022;Expression=AK068248;TENOR=Os02t0580300-02;KEGG=Os02t0580300-02
Chr02	irgsp1_rep	five_prime_UTR	22333316	22333339	.	+	.	Parent=Os02t0580300-02
Chr02	irgsp1_rep	five_prime_UTR	22333593	22334816	.	+	.	Parent=Os02t0580300-02
Chr02	irgsp1_rep	five_prime_UTR	22335300	22335341	.	+	.	Parent=Os02t0580300-02
Chr02	irgsp1_rep	CDS	22335342	22335751	.	+	0	Parent=Os02t0580300-02
Chr02	irgsp1_rep	CDS	22335840	22335918	.	+	1	Parent=Os02t0580300-02
Chr02	irgsp1_rep	CDS	22336079	22336201	.	+	0	Parent=Os02t0580300-02
Chr02	irgsp1_rep	CDS	22336863	22336979	.	+	0	Parent=Os02t0580300-02
Chr02	irgsp1_rep	CDS	22337074	22337133	.	+	0	Parent=Os02t0580300-02
Chr02	irgsp1_rep	three_prime_UTR	22337134	22337414	.	+	.	Parent=Os02t0580300-02
Chr02	irgsp1_rep	mRNA	22335336	22337607	.	+	.	ID=Os02t0580300-03;Name=Os02t0580300-03;Locus_id=Os02g0580300;CGSNL Gene Symbol=GID2;CGSNL Gene Name=GIBBERELLIN-INSENSITIVE DWARF 2;Oryzabase Gene Symbol Synonym(s)=gid2%2C GF14e%2C OsGF14e%2C OsGID2%2C 14-3-3e;Oryzabase Gene Name Synonym(s)=gibberellin-insensitive dwarf2%2C GIBBERELLIN INSENSITIVE DWARF2%2C GA-insensitive dwarf 2%2C F-box protein GID2%2C Gibberellin-insensitive dwarf protein 2%2C Protein GIBBERELLIN INSENSITIVE DWARF2%2C G-box factor 14-3-3e protein;Note=Similar to 14-3-3 protein 6.;Transcript_evidence=AK104907 (DDBJ%2C Best hit);ORF_evidence=Q6EUP4 (UniProt);GO=Molecular Function: protein domain specific binding (GO:0019904);InterPro=14-3-3 protein (IPR000308),14-3-3 protein%2C conserved site (IPR023409),14-3-3 domain (IPR023410);NIAS_FLcDNA=001-046-G11;Oryzabase=3022;Expression=AK104907;TENOR=Os02t0580300-03;KEGG=Os02t0580300-03
Chr02	irgsp1_rep	five_prime_UTR	22335336	22335341	.	+	.	Parent=Os02t0580300-03
Chr02	irgsp1_rep	CDS	22335342	22335751	.	+	0	Parent=Os02t0580300-03
Chr02	irgsp1_rep	CDS	22335840	22335918	.	+	1	Parent=Os02t0580300-03
Chr02	irgsp1_rep	CDS	22336079	22336201	.	+	0	Parent=Os02t0580300-03
Chr02	irgsp1_rep	CDS	22336863	22336979	.	+	0	Parent=Os02t0580300-03
Chr02	irgsp1_rep	CDS	22337074	22337133	.	+	0	Parent=Os02t0580300-03
Chr02	irgsp1_rep	three_prime_UTR	22337134	22337607	.	+	.	Parent=Os02t0580300-03
Chr02	irgsp1_rep	mRNA	22333664	22334302	.	+	.	ID=Os02t0580300-04;Name=Os02t0580300-04;Locus_id=Os02g0580300;RAP-DB Gene Symbol Synonym(s)=GID2%2C OsGID2;RAP-DB Gene Name Synonym(s)=GIBBERELLIN-INSENSITIVE DWARF 2%2C gibberellin-insensitive dwarf2;CGSNL Gene Symbol=GID2;CGSNL Gene Name=GIBBERELLIN-INSENSITIVE DWARF 2;Oryzabase Gene Symbol Synonym(s)=gid2%2C GF14e%2C OsGF14e%2C OsGID2%2C 14-3-3e;Oryzabase Gene Name Synonym(s)=gibberellin-insensitive dwarf2%2C GIBBERELLIN INSENSITIVE DWARF2%2C GA-insensitive dwarf 2%2C F-box protein GID2%2C Gibberellin-insensitive dwarf protein 2%2C Protein GIBBERELLIN INSENSITIVE DWARF2%2C G-box factor 14-3-3e protein;Note=F-box protein%2C Positive regulator of GA signaling;Transcript_evidence=AB100246 (Taichung 65);ORF_evidence=Q7XAK4;GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain (IPR001810);Manual Curation=July 6%2C 2020;Literature_PMID=12649483,14756772;Oryzabase=3022
Chr02	irgsp1_rep	CDS	22333664	22334302	.	+	0	Parent=Os02t0580300-04
Chr02	irgsp1_rep	mRNA	22335324	22336980	.	-	.	ID=Os02t0580366-00;Name=Os02t0580366-00;Locus_id=Os02g0580366;Note=Non-protein coding transcript.;Transcript_evidence=BT017754 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0580366-00
Chr02	irgsp1_rep	exon	22336849	22336980	.	-	.	Parent=Os02t0580366-00
Chr02	irgsp1_rep	exon	22336075	22336189	.	-	.	Parent=Os02t0580366-00
Chr02	irgsp1_rep	exon	22335838	22335914	.	-	.	Parent=Os02t0580366-00
Chr02	irgsp1_rep	exon	22335324	22335749	.	-	.	Parent=Os02t0580366-00
Chr02	irgsp1_rep	mRNA	22339538	22343500	.	-	.	ID=Os02t0580400-01;Name=Os02t0580400-01;Locus_id=Os02g0580400;Note=Dynein light chain%2C type 1 family protein.;Transcript_evidence=AK103053 (DDBJ%2C Best hit);ORF_evidence=NP_001150520.1 (RefSeq);GO=Biological Process: microtubule-based process (GO:0007017),Cellular Component: microtubule associated complex (GO:0005875);InterPro=Dynein light chain%2C type 1/2 (IPR001372);NIAS_FLcDNA=J033117I07;Expression=AK103053;TENOR=Os02t0580400-01;KEGG=Os02t0580400-01
Chr02	irgsp1_rep	five_prime_UTR	22343336	22343500	.	-	.	Parent=Os02t0580400-01
Chr02	irgsp1_rep	CDS	22342898	22343335	.	-	0	Parent=Os02t0580400-01
Chr02	irgsp1_rep	CDS	22339885	22340046	.	-	0	Parent=Os02t0580400-01
Chr02	irgsp1_rep	three_prime_UTR	22339538	22339884	.	-	.	Parent=Os02t0580400-01
Chr02	irgsp1_rep	mRNA	22347066	22348185	.	-	.	ID=Os02t0580500-01;Name=Os02t0580500-01;Locus_id=Os02g0580500;Note=Similar to Prohibitin.;Transcript_evidence=AK108467 (DDBJ%2C Best hit);ORF_evidence=B6TA72 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Prohibitin (IPR000163),Band 7 protein (IPR001107);NIAS_FLcDNA=002-143-E02;Expression=AK108467;TENOR=Os02t0580500-01;KEGG=Os02t0580500-01
Chr02	irgsp1_rep	five_prime_UTR	22348124	22348185	.	-	.	Parent=Os02t0580500-01
Chr02	irgsp1_rep	CDS	22347275	22348123	.	-	0	Parent=Os02t0580500-01
Chr02	irgsp1_rep	three_prime_UTR	22347066	22347274	.	-	.	Parent=Os02t0580500-01
Chr02	irgsp1_rep	mRNA	22350015	22352006	.	+	.	ID=Os02t0580600-01;Name=Os02t0580600-01;Locus_id=Os02g0580600;Note=Similar to Dimethylaniline monooxygenase-like protein.;Transcript_evidence=AK109647 (DDBJ%2C Best hit);ORF_evidence=B7EKX6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: flavin-containing monooxygenase activity (GO:0004499),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=Flavin monooxygenase-like (IPR020946);NIAS_FLcDNA=002-138-H11;Expression=AK109647;TENOR=Os02t0580600-01;KEGG=Os02t0580600-01 (EC:1.14.13.8)
Chr02	irgsp1_rep	five_prime_UTR	22350015	22350061	.	+	.	Parent=Os02t0580600-01
Chr02	irgsp1_rep	CDS	22350062	22350126	.	+	0	Parent=Os02t0580600-01
Chr02	irgsp1_rep	CDS	22350274	22350734	.	+	1	Parent=Os02t0580600-01
Chr02	irgsp1_rep	CDS	22350847	22350917	.	+	2	Parent=Os02t0580600-01
Chr02	irgsp1_rep	CDS	22351019	22351585	.	+	0	Parent=Os02t0580600-01
Chr02	irgsp1_rep	CDS	22351663	22351908	.	+	0	Parent=Os02t0580600-01
Chr02	irgsp1_rep	three_prime_UTR	22351909	22352006	.	+	.	Parent=Os02t0580600-01
Chr02	irgsp1_rep	mRNA	22355195	22362054	.	+	.	ID=Os02t0580700-01;Name=Os02t0580700-01;Locus_id=Os02g0580700;Note=Conserved hypothetical protein.;Transcript_evidence=AK073664 (DDBJ%2C Best hit);ORF_evidence=B9F0R3 (UniProt);NIAS_FLcDNA=J033047H18;Expression=AK073664;TENOR=Os02t0580700-01;KEGG=Os02t0580700-01
Chr02	irgsp1_rep	five_prime_UTR	22355195	22355341	.	+	.	Parent=Os02t0580700-01
Chr02	irgsp1_rep	CDS	22355342	22355356	.	+	0	Parent=Os02t0580700-01
Chr02	irgsp1_rep	CDS	22355510	22355683	.	+	0	Parent=Os02t0580700-01
Chr02	irgsp1_rep	CDS	22359877	22361014	.	+	0	Parent=Os02t0580700-01
Chr02	irgsp1_rep	CDS	22361114	22361508	.	+	2	Parent=Os02t0580700-01
Chr02	irgsp1_rep	CDS	22361614	22361640	.	+	0	Parent=Os02t0580700-01
Chr02	irgsp1_rep	three_prime_UTR	22361641	22362054	.	+	.	Parent=Os02t0580700-01
Chr02	irgsp1_rep	mRNA	22365326	22367331	.	-	.	ID=Os02t0580800-01;Name=Os02t0580800-01;Locus_id=Os02g0580800;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=AK068477 (DDBJ%2C Best hit);ORF_evidence=A3A8D5 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J013153F14;TENOR=Os02t0580800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	22367093	22367331	.	-	.	Parent=Os02t0580800-01
Chr02	irgsp1_rep	five_prime_UTR	22366950	22366971	.	-	.	Parent=Os02t0580800-01
Chr02	irgsp1_rep	CDS	22366905	22366949	.	-	0	Parent=Os02t0580800-01
Chr02	irgsp1_rep	CDS	22365588	22366499	.	-	0	Parent=Os02t0580800-01
Chr02	irgsp1_rep	three_prime_UTR	22365326	22365587	.	-	.	Parent=Os02t0580800-01
Chr02	irgsp1_rep	mRNA	22363648	22367317	.	-	.	ID=Os02t0580800-02;Name=Os02t0580800-02;Locus_id=Os02g0580800;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=AK119275 (DDBJ%2C Best hit);ORF_evidence=A3A8D5 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=001-130-B07;TENOR=Os02t0580800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	22366950	22367317	.	-	.	Parent=Os02t0580800-02
Chr02	irgsp1_rep	CDS	22366905	22366949	.	-	0	Parent=Os02t0580800-02
Chr02	irgsp1_rep	CDS	22365588	22366499	.	-	0	Parent=Os02t0580800-02
Chr02	irgsp1_rep	three_prime_UTR	22363648	22365587	.	-	.	Parent=Os02t0580800-02
Chr02	irgsp1_rep	mRNA	22365276	22365476	.	-	.	ID=Os02t0580800-03;Name=Os02t0580800-03;Locus_id=Os02g0580800;Note=Non-protein coding transcript.;Transcript_evidence=AK060636 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-027-C01;TENOR=Os02t0580800-03
Chr02	irgsp1_rep	exon	22365276	22365476	.	-	.	Parent=Os02t0580800-03
Chr02	irgsp1_rep	mRNA	22369930	22374416	.	-	.	ID=Os02t0580900-01;Name=Os02t0580900-01;Locus_id=Os02g0580900;Oryzabase Gene Symbol Synonym(s)=OsNRT1.3A;Oryzabase Gene Name Synonym(s)=nitrate transporter 1.3A;Note=TGF-beta receptor%2C type I/II extracellular region family protein.;Transcript_evidence=AK120486 (DDBJ%2C Best hit);ORF_evidence=NP_001147955.1 (RefSeq);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J013113P19;Oryzabase=19899;Expression=AK120486;TENOR=Os02t0580900-01;KEGG=Os02t0580900-01
Chr02	irgsp1_rep	five_prime_UTR	22374310	22374416	.	-	.	Parent=Os02t0580900-01
Chr02	irgsp1_rep	CDS	22374307	22374309	.	-	0	Parent=Os02t0580900-01
Chr02	irgsp1_rep	CDS	22373949	22374066	.	-	0	Parent=Os02t0580900-01
Chr02	irgsp1_rep	CDS	22373615	22373832	.	-	2	Parent=Os02t0580900-01
Chr02	irgsp1_rep	CDS	22372971	22373524	.	-	0	Parent=Os02t0580900-01
Chr02	irgsp1_rep	CDS	22370198	22371134	.	-	1	Parent=Os02t0580900-01
Chr02	irgsp1_rep	three_prime_UTR	22369930	22370197	.	-	.	Parent=Os02t0580900-01
Chr02	irgsp1_rep	mRNA	22369985	22371481	.	-	.	ID=Os02t0580900-02;Name=Os02t0580900-02;Locus_id=Os02g0580900;Oryzabase Gene Symbol Synonym(s)=OsNRT1.3A;Oryzabase Gene Name Synonym(s)=nitrate transporter 1.3A;Note=Similar to peptide transporter PTR2.;Transcript_evidence=AK072036 (DDBJ%2C Best hit);ORF_evidence=NP_001147955.1 (RefSeq);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109);NIAS_FLcDNA=J013106D24;Oryzabase=19899;Expression=AK072036;TENOR=Os02t0580900-02;KEGG=Os02t0580900-02
Chr02	irgsp1_rep	five_prime_UTR	22371182	22371481	.	-	.	Parent=Os02t0580900-02
Chr02	irgsp1_rep	CDS	22370198	22371181	.	-	0	Parent=Os02t0580900-02
Chr02	irgsp1_rep	three_prime_UTR	22369985	22370197	.	-	.	Parent=Os02t0580900-02
Chr02	irgsp1_rep	mRNA	22370326	22373829	.	+	.	ID=Os02t0580966-00;Name=Os02t0580966-00;Locus_id=Os02g0580966;Note=Hypothetical protein.;Transcript_evidence=tplb0061c10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0580966-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	22370326	22370498	.	+	.	Parent=Os02t0580966-00
Chr02	irgsp1_rep	CDS	22370499	22371177	.	+	0	Parent=Os02t0580966-00
Chr02	irgsp1_rep	CDS	22372989	22373507	.	+	2	Parent=Os02t0580966-00
Chr02	irgsp1_rep	CDS	22373608	22373654	.	+	2	Parent=Os02t0580966-00
Chr02	irgsp1_rep	three_prime_UTR	22373655	22373829	.	+	.	Parent=Os02t0580966-00
Chr02	irgsp1_rep	mRNA	22381101	22389666	.	-	.	ID=Os02t0580983-00;Name=Os02t0580983-00;Locus_id=Os02g0580983;Note=Hypothetical protein.;Transcript_evidence=tplb0061c06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0580983-00
Chr02	irgsp1_rep	five_prime_UTR	22389403	22389666	.	-	.	Parent=Os02t0580983-00
Chr02	irgsp1_rep	five_prime_UTR	22389179	22389290	.	-	.	Parent=Os02t0580983-00
Chr02	irgsp1_rep	five_prime_UTR	22388292	22388323	.	-	.	Parent=Os02t0580983-00
Chr02	irgsp1_rep	five_prime_UTR	22388063	22388186	.	-	.	Parent=Os02t0580983-00
Chr02	irgsp1_rep	five_prime_UTR	22387787	22387970	.	-	.	Parent=Os02t0580983-00
Chr02	irgsp1_rep	five_prime_UTR	22387593	22387688	.	-	.	Parent=Os02t0580983-00
Chr02	irgsp1_rep	five_prime_UTR	22386551	22386675	.	-	.	Parent=Os02t0580983-00
Chr02	irgsp1_rep	five_prime_UTR	22386341	22386461	.	-	.	Parent=Os02t0580983-00
Chr02	irgsp1_rep	five_prime_UTR	22385961	22386149	.	-	.	Parent=Os02t0580983-00
Chr02	irgsp1_rep	five_prime_UTR	22385648	22385880	.	-	.	Parent=Os02t0580983-00
Chr02	irgsp1_rep	five_prime_UTR	22384904	22385217	.	-	.	Parent=Os02t0580983-00
Chr02	irgsp1_rep	five_prime_UTR	22384547	22384620	.	-	.	Parent=Os02t0580983-00
Chr02	irgsp1_rep	five_prime_UTR	22384364	22384441	.	-	.	Parent=Os02t0580983-00
Chr02	irgsp1_rep	five_prime_UTR	22384064	22384277	.	-	.	Parent=Os02t0580983-00
Chr02	irgsp1_rep	five_prime_UTR	22383509	22383811	.	-	.	Parent=Os02t0580983-00
Chr02	irgsp1_rep	five_prime_UTR	22382826	22382980	.	-	.	Parent=Os02t0580983-00
Chr02	irgsp1_rep	five_prime_UTR	22381672	22381697	.	-	.	Parent=Os02t0580983-00
Chr02	irgsp1_rep	CDS	22381513	22381671	.	-	0	Parent=Os02t0580983-00
Chr02	irgsp1_rep	CDS	22381333	22381416	.	-	0	Parent=Os02t0580983-00
Chr02	irgsp1_rep	three_prime_UTR	22381101	22381332	.	-	.	Parent=Os02t0580983-00
Chr02	irgsp1_rep	mRNA	22381199	22389666	.	+	.	ID=Os02t0581000-00;Name=Os02t0581000-00;Locus_id=Os02g0581000;Note=GPI ethanolamine phosphate transferase 1 domain containing protein.;Transcript_evidence=AK367917 (DDBJ);ORF_evidence=B8AEM7 (UniProt);GO=Biological Process: GPI anchor biosynthetic process (GO:0006506),Biological Process: metabolic process (GO:0008152),Cellular Component: endoplasmic reticulum membrane (GO:0005789),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity (GO:0016740);InterPro=GPI ethanolamine phosphate transferase 1 (IPR007070),Alkaline phosphatase-like%2C alpha/beta/alpha (IPR017849),Alkaline-phosphatase-like%2C core domain (IPR017850),GPI ethanolamine phosphate transferase 1%2C C-terminal (IPR017852);TENOR=Os02t0581000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	22381199	22381421	.	+	0	Parent=Os02t0581000-00
Chr02	irgsp1_rep	CDS	22381518	22381709	.	+	2	Parent=Os02t0581000-00
Chr02	irgsp1_rep	CDS	22382836	22382991	.	+	2	Parent=Os02t0581000-00
Chr02	irgsp1_rep	CDS	22383520	22383813	.	+	2	Parent=Os02t0581000-00
Chr02	irgsp1_rep	CDS	22384066	22384283	.	+	2	Parent=Os02t0581000-00
Chr02	irgsp1_rep	CDS	22384369	22384443	.	+	0	Parent=Os02t0581000-00
Chr02	irgsp1_rep	CDS	22384549	22384615	.	+	0	Parent=Os02t0581000-00
Chr02	irgsp1_rep	CDS	22384895	22385217	.	+	2	Parent=Os02t0581000-00
Chr02	irgsp1_rep	CDS	22385648	22385929	.	+	0	Parent=Os02t0581000-00
Chr02	irgsp1_rep	three_prime_UTR	22385930	22386149	.	+	.	Parent=Os02t0581000-00
Chr02	irgsp1_rep	three_prime_UTR	22386341	22386476	.	+	.	Parent=Os02t0581000-00
Chr02	irgsp1_rep	three_prime_UTR	22386570	22386678	.	+	.	Parent=Os02t0581000-00
Chr02	irgsp1_rep	three_prime_UTR	22387595	22387697	.	+	.	Parent=Os02t0581000-00
Chr02	irgsp1_rep	three_prime_UTR	22387795	22387981	.	+	.	Parent=Os02t0581000-00
Chr02	irgsp1_rep	three_prime_UTR	22388074	22388172	.	+	.	Parent=Os02t0581000-00
Chr02	irgsp1_rep	three_prime_UTR	22388273	22388331	.	+	.	Parent=Os02t0581000-00
Chr02	irgsp1_rep	three_prime_UTR	22389188	22389293	.	+	.	Parent=Os02t0581000-00
Chr02	irgsp1_rep	three_prime_UTR	22389405	22389666	.	+	.	Parent=Os02t0581000-00
Chr02	irgsp1_rep	mRNA	22390373	22390985	.	+	.	ID=Os02t0581100-01;Name=Os02t0581100-01;Locus_id=Os02g0581100;Note=Similar to photosystem II 5 kD protein.;Transcript_evidence=AK287960 (DDBJ%2C Best hit);ORF_evidence=NP_564589.1 (RefSeq);NIAS_FLcDNA=J075056M08;TENOR=Os02t0581100-01;KEGG=Os02t0581100-01
Chr02	irgsp1_rep	five_prime_UTR	22390373	22390448	.	+	.	Parent=Os02t0581100-01
Chr02	irgsp1_rep	CDS	22390449	22390808	.	+	0	Parent=Os02t0581100-01
Chr02	irgsp1_rep	three_prime_UTR	22390809	22390985	.	+	.	Parent=Os02t0581100-01
Chr02	irgsp1_rep	mRNA	22401334	22402012	.	+	.	ID=Os02t0581200-01;Name=Os02t0581200-01;Locus_id=Os02g0581200;Note=Similar to OSIGBa0115M15.3 protein.;Transcript_evidence=AK062477 (DDBJ%2C Best hit);ORF_evidence=Q01KF6 (UniProt);NIAS_FLcDNA=001-103-F10;Expression=AK062477;TENOR=Os02t0581200-01;KEGG=Os02t0581200-01
Chr02	irgsp1_rep	five_prime_UTR	22401334	22401482	.	+	.	Parent=Os02t0581200-01
Chr02	irgsp1_rep	CDS	22401483	22401725	.	+	0	Parent=Os02t0581200-01
Chr02	irgsp1_rep	three_prime_UTR	22401726	22402012	.	+	.	Parent=Os02t0581200-01
Chr02	irgsp1_rep	mRNA	22407730	22412305	.	-	.	ID=Os02t0581300-01;Name=Os02t0581300-01;Locus_id=Os02g0581300;Note=TRAM%2C LAG1 and CLN8 homology domain containing protein.;Transcript_evidence=AK071553 (DDBJ%2C Best hit);ORF_evidence=B6U2L0 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=TRAM/LAG1/CLN8 homology domain (IPR006634),Longevity assurance%2C LAG1/LAC1 (IPR016439);NIAS_FLcDNA=J023105G15;Expression=AK071553;TENOR=Os02t0581300-01;KEGG=Os02t0581300-01
Chr02	irgsp1_rep	five_prime_UTR	22412147	22412305	.	-	.	Parent=Os02t0581300-01
Chr02	irgsp1_rep	CDS	22411997	22412146	.	-	0	Parent=Os02t0581300-01
Chr02	irgsp1_rep	CDS	22409973	22410196	.	-	0	Parent=Os02t0581300-01
Chr02	irgsp1_rep	CDS	22409732	22409887	.	-	1	Parent=Os02t0581300-01
Chr02	irgsp1_rep	CDS	22409361	22409546	.	-	1	Parent=Os02t0581300-01
Chr02	irgsp1_rep	CDS	22408390	22408571	.	-	1	Parent=Os02t0581300-01
Chr02	irgsp1_rep	CDS	22408166	22408197	.	-	2	Parent=Os02t0581300-01
Chr02	irgsp1_rep	three_prime_UTR	22407730	22408165	.	-	.	Parent=Os02t0581300-01
Chr02	irgsp1_rep	mRNA	22415292	22426149	.	+	.	ID=Os02t0581400-01;Name=Os02t0581400-01;Locus_id=Os02g0581400;Note=Conserved hypothetical protein.;Transcript_evidence=AK120415 (DDBJ%2C Best hit);ORF_evidence=B9F0R7 (UniProt);NIAS_FLcDNA=J013093A03;TENOR=Os02t0581400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	22415292	22415316	.	+	.	Parent=Os02t0581400-01
Chr02	irgsp1_rep	CDS	22415317	22415709	.	+	0	Parent=Os02t0581400-01
Chr02	irgsp1_rep	CDS	22416035	22416231	.	+	0	Parent=Os02t0581400-01
Chr02	irgsp1_rep	CDS	22416314	22416431	.	+	1	Parent=Os02t0581400-01
Chr02	irgsp1_rep	CDS	22417065	22417181	.	+	0	Parent=Os02t0581400-01
Chr02	irgsp1_rep	CDS	22417309	22417410	.	+	0	Parent=Os02t0581400-01
Chr02	irgsp1_rep	CDS	22418038	22418106	.	+	0	Parent=Os02t0581400-01
Chr02	irgsp1_rep	three_prime_UTR	22418107	22418111	.	+	.	Parent=Os02t0581400-01
Chr02	irgsp1_rep	three_prime_UTR	22418583	22418651	.	+	.	Parent=Os02t0581400-01
Chr02	irgsp1_rep	three_prime_UTR	22419030	22419140	.	+	.	Parent=Os02t0581400-01
Chr02	irgsp1_rep	three_prime_UTR	22419204	22419398	.	+	.	Parent=Os02t0581400-01
Chr02	irgsp1_rep	three_prime_UTR	22419630	22419728	.	+	.	Parent=Os02t0581400-01
Chr02	irgsp1_rep	three_prime_UTR	22420351	22420829	.	+	.	Parent=Os02t0581400-01
Chr02	irgsp1_rep	three_prime_UTR	22420951	22421175	.	+	.	Parent=Os02t0581400-01
Chr02	irgsp1_rep	three_prime_UTR	22421643	22421945	.	+	.	Parent=Os02t0581400-01
Chr02	irgsp1_rep	three_prime_UTR	22422247	22423287	.	+	.	Parent=Os02t0581400-01
Chr02	irgsp1_rep	three_prime_UTR	22423850	22423958	.	+	.	Parent=Os02t0581400-01
Chr02	irgsp1_rep	three_prime_UTR	22424738	22424890	.	+	.	Parent=Os02t0581400-01
Chr02	irgsp1_rep	three_prime_UTR	22424966	22425208	.	+	.	Parent=Os02t0581400-01
Chr02	irgsp1_rep	three_prime_UTR	22425302	22425469	.	+	.	Parent=Os02t0581400-01
Chr02	irgsp1_rep	three_prime_UTR	22425584	22425763	.	+	.	Parent=Os02t0581400-01
Chr02	irgsp1_rep	three_prime_UTR	22425845	22426149	.	+	.	Parent=Os02t0581400-01
Chr02	irgsp1_rep	mRNA	22421879	22426149	.	+	.	ID=Os02t0581400-02;Name=Os02t0581400-02;Locus_id=Os02g0581400;Note=Conserved hypothetical protein.;Transcript_evidence=AK071897 (DDBJ%2C Best hit);ORF_evidence=B9F0R7 (UniProt);NIAS_FLcDNA=J013053F02;TENOR=Os02t0581400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	22421879	22421945	.	+	.	Parent=Os02t0581400-02
Chr02	irgsp1_rep	five_prime_UTR	22422247	22422669	.	+	.	Parent=Os02t0581400-02
Chr02	irgsp1_rep	five_prime_UTR	22422753	22422876	.	+	.	Parent=Os02t0581400-02
Chr02	irgsp1_rep	CDS	22422877	22423182	.	+	0	Parent=Os02t0581400-02
Chr02	irgsp1_rep	three_prime_UTR	22423183	22423287	.	+	.	Parent=Os02t0581400-02
Chr02	irgsp1_rep	three_prime_UTR	22423850	22423958	.	+	.	Parent=Os02t0581400-02
Chr02	irgsp1_rep	three_prime_UTR	22424738	22425208	.	+	.	Parent=Os02t0581400-02
Chr02	irgsp1_rep	three_prime_UTR	22425302	22425469	.	+	.	Parent=Os02t0581400-02
Chr02	irgsp1_rep	three_prime_UTR	22425620	22425763	.	+	.	Parent=Os02t0581400-02
Chr02	irgsp1_rep	three_prime_UTR	22425845	22426149	.	+	.	Parent=Os02t0581400-02
Chr02	irgsp1_rep	mRNA	22426234	22428879	.	+	.	ID=Os02t0581500-01;Name=Os02t0581500-01;Locus_id=Os02g0581500;Note=Alpha/beta hydrolase fold-1 domain containing protein.;Transcript_evidence=AK059396 (DDBJ%2C Best hit);ORF_evidence=B8AEN0 (UniProt);GO=Biological Process: menaquinone biosynthetic process (GO:0009234),Molecular Function: 2-succinyl-6-hydroxy-2%2C4-cyclohexadiene-1-carboxylate synthase activity (GO:0070205);InterPro=Alpha/beta hydrolase fold-1 (IPR000073),2-succinyl-6-hydroxy-2%2C4-cyclohexadiene-1-carboxylate synthase (IPR022485);NIAS_FLcDNA=001-027-A08;TENOR=Os02t0581500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	22426234	22426306	.	+	.	Parent=Os02t0581500-01
Chr02	irgsp1_rep	five_prime_UTR	22426423	22426501	.	+	.	Parent=Os02t0581500-01
Chr02	irgsp1_rep	CDS	22426502	22426603	.	+	0	Parent=Os02t0581500-01
Chr02	irgsp1_rep	CDS	22427102	22427398	.	+	0	Parent=Os02t0581500-01
Chr02	irgsp1_rep	CDS	22427474	22427631	.	+	0	Parent=Os02t0581500-01
Chr02	irgsp1_rep	CDS	22427746	22427853	.	+	1	Parent=Os02t0581500-01
Chr02	irgsp1_rep	CDS	22428081	22428339	.	+	1	Parent=Os02t0581500-01
Chr02	irgsp1_rep	three_prime_UTR	22428340	22428879	.	+	.	Parent=Os02t0581500-01
Chr02	irgsp1_rep	mRNA	22429255	22429929	.	-	.	ID=Os02t0581600-01;Name=Os02t0581600-01;Locus_id=Os02g0581600;Note=Hypothetical protein.;Transcript_evidence=AK109205 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-156-C08;TENOR=Os02t0581600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	22429929	22429929	.	-	.	Parent=Os02t0581600-01
Chr02	irgsp1_rep	CDS	22429437	22429928	.	-	0	Parent=Os02t0581600-01
Chr02	irgsp1_rep	three_prime_UTR	22429255	22429436	.	-	.	Parent=Os02t0581600-01
Chr02	irgsp1_rep	mRNA	22429445	22430062	.	+	.	ID=Os02t0581700-01;Name=Os02t0581700-01;Locus_id=Os02g0581700;Note=Similar to ABC-2 type transporter family protein.;Transcript_evidence=AK072994 (DDBJ%2C Best hit);ORF_evidence=NP_001151994.1 (RefSeq);NIAS_FLcDNA=J023147O19;TENOR=Os02t0581700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	22429445	22429514	.	+	.	Parent=Os02t0581700-01
Chr02	irgsp1_rep	CDS	22429515	22429706	.	+	0	Parent=Os02t0581700-01
Chr02	irgsp1_rep	three_prime_UTR	22429707	22430062	.	+	.	Parent=Os02t0581700-01
Chr02	irgsp1_rep	mRNA	22432053	22432863	.	+	.	ID=Os02t0581800-01;Name=Os02t0581800-01;Locus_id=Os02g0581800;Note=Conserved hypothetical protein.;Transcript_evidence=AK241077 (DDBJ%2C Best hit);ORF_evidence=NP_001173038.1 (RefSeq);NIAS_FLcDNA=J065071F12;TENOR=Os02t0581800-01;KEGG=Os02t0581800-01
Chr02	irgsp1_rep	five_prime_UTR	22432053	22432164	.	+	.	Parent=Os02t0581800-01
Chr02	irgsp1_rep	CDS	22432165	22432264	.	+	0	Parent=Os02t0581800-01
Chr02	irgsp1_rep	CDS	22432419	22432636	.	+	2	Parent=Os02t0581800-01
Chr02	irgsp1_rep	three_prime_UTR	22432637	22432863	.	+	.	Parent=Os02t0581800-01
Chr02	irgsp1_rep	mRNA	22433561	22434501	.	+	.	ID=Os02t0581900-01;Name=Os02t0581900-01;Locus_id=Os02g0581900;Note=Similar to Pentatricopeptide repeat protein PPR986-12.;Transcript_evidence=AK241660 (DDBJ%2C Best hit);ORF_evidence=B6SVV0 (UniProt);NIAS_FLcDNA=J065191H04;TENOR=Os02t0581900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	22433561	22433785	.	+	.	Parent=Os02t0581900-01
Chr02	irgsp1_rep	CDS	22433786	22434073	.	+	0	Parent=Os02t0581900-01
Chr02	irgsp1_rep	three_prime_UTR	22434074	22434501	.	+	.	Parent=Os02t0581900-01
Chr02	irgsp1_rep	mRNA	22436124	22440885	.	-	.	ID=Os02t0582100-00;Name=Os02t0582100-00;Locus_id=Os02g0582100;Note=Conserved hypothetical protein.;Transcript_evidence=CT835334 (DDBJ%2C Best hit);ORF_evidence=B9F0R9 (UniProt);TENOR=Os02t0582100-00;KEGG=Os02t0582100-00
Chr02	irgsp1_rep	five_prime_UTR	22440715	22440885	.	-	.	Parent=Os02t0582100-00
Chr02	irgsp1_rep	five_prime_UTR	22439260	22439349	.	-	.	Parent=Os02t0582100-00
Chr02	irgsp1_rep	five_prime_UTR	22438737	22438878	.	-	.	Parent=Os02t0582100-00
Chr02	irgsp1_rep	five_prime_UTR	22438160	22438287	.	-	.	Parent=Os02t0582100-00
Chr02	irgsp1_rep	CDS	22437584	22438159	.	-	0	Parent=Os02t0582100-00
Chr02	irgsp1_rep	CDS	22436663	22437384	.	-	0	Parent=Os02t0582100-00
Chr02	irgsp1_rep	CDS	22436426	22436534	.	-	1	Parent=Os02t0582100-00
Chr02	irgsp1_rep	three_prime_UTR	22436124	22436425	.	-	.	Parent=Os02t0582100-00
Chr02	irgsp1_rep	mRNA	22445010	22448965	.	-	.	ID=Os02t0582200-01;Name=Os02t0582200-01;Locus_id=Os02g0582200;Note=Conserved hypothetical protein.;Transcript_evidence=AK068936 (DDBJ%2C Best hit);ORF_evidence=B8AEN3 (UniProt);NIAS_FLcDNA=J023003F10;TENOR=Os02t0582200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	22448730	22448965	.	-	.	Parent=Os02t0582200-01
Chr02	irgsp1_rep	five_prime_UTR	22447821	22447876	.	-	.	Parent=Os02t0582200-01
Chr02	irgsp1_rep	CDS	22447643	22447820	.	-	0	Parent=Os02t0582200-01
Chr02	irgsp1_rep	CDS	22447474	22447557	.	-	2	Parent=Os02t0582200-01
Chr02	irgsp1_rep	CDS	22445421	22446184	.	-	2	Parent=Os02t0582200-01
Chr02	irgsp1_rep	three_prime_UTR	22445010	22445420	.	-	.	Parent=Os02t0582200-01
Chr02	irgsp1_rep	mRNA	22452697	22457747	.	-	.	ID=Os02t0582300-01;Name=Os02t0582300-01;Locus_id=Os02g0582300;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK101861 (DDBJ%2C Best hit);ORF_evidence=A3A8E4 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033070B12;Expression=AK101861;TENOR=Os02t0582300-01;KEGG=Os02t0582300-01
Chr02	irgsp1_rep	five_prime_UTR	22457618	22457747	.	-	.	Parent=Os02t0582300-01
Chr02	irgsp1_rep	CDS	22455080	22457617	.	-	0	Parent=Os02t0582300-01
Chr02	irgsp1_rep	three_prime_UTR	22454908	22455079	.	-	.	Parent=Os02t0582300-01
Chr02	irgsp1_rep	three_prime_UTR	22453719	22454101	.	-	.	Parent=Os02t0582300-01
Chr02	irgsp1_rep	three_prime_UTR	22452697	22452984	.	-	.	Parent=Os02t0582300-01
Chr02	irgsp1_rep	mRNA	22459494	22462753	.	-	.	ID=Os02t0582400-01;Name=Os02t0582400-01;Locus_id=Os02g0582400;Note=Conserved hypothetical protein.;Transcript_evidence=AK070989 (DDBJ%2C Best hit);ORF_evidence=F2DJP9 (UniProt);NIAS_FLcDNA=J023075I23;Expression=AK070989;TENOR=Os02t0582400-01;KEGG=Os02t0582400-01
Chr02	irgsp1_rep	five_prime_UTR	22462654	22462753	.	-	.	Parent=Os02t0582400-01
Chr02	irgsp1_rep	CDS	22462556	22462653	.	-	0	Parent=Os02t0582400-01
Chr02	irgsp1_rep	CDS	22462330	22462432	.	-	1	Parent=Os02t0582400-01
Chr02	irgsp1_rep	CDS	22460527	22460907	.	-	0	Parent=Os02t0582400-01
Chr02	irgsp1_rep	CDS	22459733	22459861	.	-	0	Parent=Os02t0582400-01
Chr02	irgsp1_rep	three_prime_UTR	22459494	22459732	.	-	.	Parent=Os02t0582400-01
Chr02	irgsp1_rep	mRNA	22459391	22462464	.	-	.	ID=Os02t0582400-02;Name=Os02t0582400-02;Locus_id=Os02g0582400;Note=Conserved hypothetical protein.;Transcript_evidence=AK059625 (DDBJ%2C Best hit);ORF_evidence=F2DJP9 (UniProt);NIAS_FLcDNA=001-030-H07;TENOR=Os02t0582400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	22462459	22462464	.	-	.	Parent=Os02t0582400-02
Chr02	irgsp1_rep	CDS	22462330	22462458	.	-	0	Parent=Os02t0582400-02
Chr02	irgsp1_rep	CDS	22460527	22460907	.	-	0	Parent=Os02t0582400-02
Chr02	irgsp1_rep	CDS	22459733	22459861	.	-	0	Parent=Os02t0582400-02
Chr02	irgsp1_rep	three_prime_UTR	22459391	22459732	.	-	.	Parent=Os02t0582400-02
Chr02	irgsp1_rep	mRNA	22468209	22469788	.	-	.	ID=Os02t0582600-01;Name=Os02t0582600-01;Locus_id=Os02g0582600;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK102380 (DDBJ%2C Best hit);ORF_evidence=B7E663 (UniProt);NIAS_FLcDNA=J033092A09;Expression=AK102380;TENOR=Os02t0582600-01;KEGG=Os02t0582600-01
Chr02	irgsp1_rep	five_prime_UTR	22469595	22469788	.	-	.	Parent=Os02t0582600-01
Chr02	irgsp1_rep	CDS	22469589	22469594	.	-	0	Parent=Os02t0582600-01
Chr02	irgsp1_rep	CDS	22469232	22469310	.	-	0	Parent=Os02t0582600-01
Chr02	irgsp1_rep	CDS	22468483	22469138	.	-	2	Parent=Os02t0582600-01
Chr02	irgsp1_rep	three_prime_UTR	22468209	22468482	.	-	.	Parent=Os02t0582600-01
Chr02	irgsp1_rep	mRNA	22468206	22469684	.	-	.	ID=Os02t0582600-02;Name=Os02t0582600-02;Locus_id=Os02g0582600;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK059791 (DDBJ%2C Best hit);ORF_evidence=B7E663 (UniProt);NIAS_FLcDNA=006-204-E03;TENOR=Os02t0582600-02
Chr02	irgsp1_rep	five_prime_UTR	22469595	22469684	.	-	.	Parent=Os02t0582600-02
Chr02	irgsp1_rep	CDS	22469589	22469594	.	-	0	Parent=Os02t0582600-02
Chr02	irgsp1_rep	CDS	22469232	22469310	.	-	0	Parent=Os02t0582600-02
Chr02	irgsp1_rep	CDS	22468483	22469138	.	-	2	Parent=Os02t0582600-02
Chr02	irgsp1_rep	three_prime_UTR	22468206	22468482	.	-	.	Parent=Os02t0582600-02
Chr02	irgsp1_rep	mRNA	22474634	22475689	.	-	.	ID=Os02t0582800-01;Name=Os02t0582800-01;Locus_id=Os02g0582800;Note=Conserved hypothetical protein.;Transcript_evidence=AK108180 (DDBJ%2C Best hit);ORF_evidence=A2X6I5 (UniProt);NIAS_FLcDNA=002-140-A10;Expression=AK108180;TENOR=Os02t0582800-01;KEGG=Os02t0582800-01
Chr02	irgsp1_rep	five_prime_UTR	22475592	22475689	.	-	.	Parent=Os02t0582800-01
Chr02	irgsp1_rep	CDS	22475586	22475591	.	-	0	Parent=Os02t0582800-01
Chr02	irgsp1_rep	CDS	22474937	22475461	.	-	0	Parent=Os02t0582800-01
Chr02	irgsp1_rep	three_prime_UTR	22474634	22474936	.	-	.	Parent=Os02t0582800-01
Chr02	irgsp1_rep	mRNA	22477790	22478946	.	-	.	ID=Os02t0582900-01;Name=Os02t0582900-01;Locus_id=Os02g0582900;Note=Conserved hypothetical protein.;Transcript_evidence=AK109082 (DDBJ%2C Best hit);ORF_evidence=A2X6I6 (UniProt);NIAS_FLcDNA=002-154-H05;Expression=AK109082;TENOR=Os02t0582900-01;KEGG=Os02t0582900-01
Chr02	irgsp1_rep	five_prime_UTR	22478855	22478946	.	-	.	Parent=Os02t0582900-01
Chr02	irgsp1_rep	CDS	22478764	22478854	.	-	0	Parent=Os02t0582900-01
Chr02	irgsp1_rep	CDS	22478126	22478376	.	-	2	Parent=Os02t0582900-01
Chr02	irgsp1_rep	three_prime_UTR	22477790	22478125	.	-	.	Parent=Os02t0582900-01
Chr02	irgsp1_rep	mRNA	22481151	22482503	.	-	.	ID=Os02t0583000-00;Name=Os02t0583000-00;Locus_id=Os02g0583000;Note=Hypothetical protein.;Transcript_evidence=CU406588 (DDBJ%2C Best hit);ORF_evidence=GeneMark;TENOR=Os02t0583000-00;KEGG=Os02t0583000-00
Chr02	irgsp1_rep	five_prime_UTR	22482418	22482503	.	-	.	Parent=Os02t0583000-00
Chr02	irgsp1_rep	CDS	22482324	22482417	.	-	0	Parent=Os02t0583000-00
Chr02	irgsp1_rep	CDS	22481648	22481886	.	-	2	Parent=Os02t0583000-00
Chr02	irgsp1_rep	three_prime_UTR	22481151	22481647	.	-	.	Parent=Os02t0583000-00
Chr02	irgsp1_rep	mRNA	22490908	22491840	.	+	.	ID=Os02t0583300-00;Name=Os02t0583300-00;Locus_id=Os02g0583300;Note=Similar to OSIGBa0132O24.3 protein.;Transcript_evidence=EU951279 (DDBJ);ORF_evidence=Q01MB4 (UniProt);TENOR=Os02t0583300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	22490908	22491699	.	+	0	Parent=Os02t0583300-00
Chr02	irgsp1_rep	three_prime_UTR	22491700	22491840	.	+	.	Parent=Os02t0583300-00
Chr02	irgsp1_rep	mRNA	22494481	22497353	.	+	.	ID=Os02t0583500-00;Name=Os02t0583500-00;Locus_id=Os02g0583500;Note=Transposase%2C Ptta/En/Spm%2C plant domain containing protein.;Transcript_evidence=EU976982 (DDBJ);ORF_evidence=NP_001047258.2 (RefSeq);InterPro=Transposase%2C Ptta/En/Spm%2C plant (IPR004252);TENOR=Os02t0583500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	22494481	22494661	.	+	.	Parent=Os02t0583500-00
Chr02	irgsp1_rep	five_prime_UTR	22494795	22494969	.	+	.	Parent=Os02t0583500-00
Chr02	irgsp1_rep	five_prime_UTR	22495377	22495410	.	+	.	Parent=Os02t0583500-00
Chr02	irgsp1_rep	CDS	22495411	22495863	.	+	0	Parent=Os02t0583500-00
Chr02	irgsp1_rep	CDS	22495985	22496197	.	+	0	Parent=Os02t0583500-00
Chr02	irgsp1_rep	CDS	22496283	22496375	.	+	0	Parent=Os02t0583500-00
Chr02	irgsp1_rep	CDS	22496820	22496924	.	+	0	Parent=Os02t0583500-00
Chr02	irgsp1_rep	CDS	22497009	22497353	.	+	0	Parent=Os02t0583500-00
Chr02	irgsp1_rep	mRNA	22509550	22510620	.	-	.	ID=Os02t0583700-00;Name=Os02t0583700-00;Locus_id=Os02g0583700;Note=Conserved hypothetical protein.;Transcript_evidence=CT835386 (DDBJ%2C Best hit);ORF_evidence=NP_001047259.1 (RefSeq);TENOR=Os02t0583700-00;KEGG=Os02t0583700-00
Chr02	irgsp1_rep	five_prime_UTR	22510549	22510620	.	-	.	Parent=Os02t0583700-00
Chr02	irgsp1_rep	CDS	22510467	22510548	.	-	0	Parent=Os02t0583700-00
Chr02	irgsp1_rep	CDS	22509898	22510025	.	-	2	Parent=Os02t0583700-00
Chr02	irgsp1_rep	three_prime_UTR	22509550	22509897	.	-	.	Parent=Os02t0583700-00
Chr02	irgsp1_rep	mRNA	22514865	22515484	.	-	.	ID=Os02t0583900-01;Name=Os02t0583900-01;Locus_id=Os02g0583900;Note=Non-protein coding transcript.;Transcript_evidence=AK070354 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023051M23;TENOR=Os02t0583900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	exon	22514865	22515484	.	-	.	Parent=Os02t0583900-01
Chr02	irgsp1_rep	mRNA	22529056	22531379	.	-	.	ID=Os02t0584200-01;Name=Os02t0584200-01;Locus_id=Os02g0584200;Oryzabase Gene Symbol Synonym(s)=OsRSP3%2C RSP3;Oryzabase Gene Name Synonym(s)=root-specific unknown protein 3;Note=Conserved hypothetical protein.;Transcript_evidence=AK243133 (DDBJ%2C Best hit);ORF_evidence=NP_001173044.1 (RefSeq);NIAS_FLcDNA=J100030C03;Oryzabase=20411;TENOR=Os02t0584200-01;KEGG=Os02t0584200-01
Chr02	irgsp1_rep	five_prime_UTR	22531324	22531379	.	-	.	Parent=Os02t0584200-01
Chr02	irgsp1_rep	CDS	22531242	22531323	.	-	0	Parent=Os02t0584200-01
Chr02	irgsp1_rep	CDS	22529385	22529524	.	-	2	Parent=Os02t0584200-01
Chr02	irgsp1_rep	three_prime_UTR	22529056	22529384	.	-	.	Parent=Os02t0584200-01
Chr02	irgsp1_rep	mRNA	22535359	22536238	.	+	.	ID=Os02t0584300-01;Name=Os02t0584300-01;Locus_id=Os02g0584300;Note=Conserved hypothetical protein.;Transcript_evidence=AK288383 (DDBJ%2C Best hit);ORF_evidence=Q6EPU2 (UniProt);NIAS_FLcDNA=J090026P15;TENOR=Os02t0584300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	22535359	22535986	.	+	.	Parent=Os02t0584300-01
Chr02	irgsp1_rep	CDS	22535987	22536085	.	+	0	Parent=Os02t0584300-01
Chr02	irgsp1_rep	three_prime_UTR	22536086	22536238	.	+	.	Parent=Os02t0584300-01
Chr02	irgsp1_rep	mRNA	22550855	22551584	.	-	.	ID=Os02t0584700-01;Name=Os02t0584700-01;Locus_id=Os02g0584700;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK241562 (DDBJ%2C Best hit);ORF_evidence=NP_001152411.1 (RefSeq);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);NIAS_FLcDNA=J065178P16;TENOR=Os02t0584700-01;KEGG=Os02t0584700-01
Chr02	irgsp1_rep	five_prime_UTR	22551423	22551584	.	-	.	Parent=Os02t0584700-01
Chr02	irgsp1_rep	CDS	22551414	22551422	.	-	0	Parent=Os02t0584700-01
Chr02	irgsp1_rep	CDS	22550981	22551325	.	-	0	Parent=Os02t0584700-01
Chr02	irgsp1_rep	three_prime_UTR	22550855	22550980	.	-	.	Parent=Os02t0584700-01
Chr02	irgsp1_rep	mRNA	22553380	22554242	.	-	.	ID=Os02t0584800-01;Name=Os02t0584800-01;Locus_id=Os02g0584800;CGSNL Gene Symbol=HMP15;CGSNL Gene Name=HEAVY METAL-ASSOCIATED PROTEIN 15;Oryzabase Gene Symbol Synonym(s)=OsHMP15;Oryzabase Gene Name Synonym(s)=Heavy metal-associated protein 15;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK243499 (DDBJ%2C Best hit);ORF_evidence=NP_001047262.1 (RefSeq);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);NIAS_FLcDNA=J100074H07;Oryzabase=23537;TENOR=Os02t0584800-01;KEGG=Os02t0584800-01
Chr02	irgsp1_rep	five_prime_UTR	22554114	22554242	.	-	.	Parent=Os02t0584800-01
Chr02	irgsp1_rep	CDS	22554105	22554113	.	-	0	Parent=Os02t0584800-01
Chr02	irgsp1_rep	CDS	22553601	22553957	.	-	0	Parent=Os02t0584800-01
Chr02	irgsp1_rep	three_prime_UTR	22553380	22553600	.	-	.	Parent=Os02t0584800-01
Chr02	irgsp1_rep	mRNA	22556916	22558121	.	-	.	ID=Os02t0584900-01;Name=Os02t0584900-01;Locus_id=Os02g0584900;Note=Conserved hypothetical protein.;Transcript_evidence=AK102041 (DDBJ%2C Best hit);ORF_evidence=B8B7A8 (UniProt);NIAS_FLcDNA=J033081H13;TENOR=Os02t0584900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	22557898	22558121	.	-	.	Parent=Os02t0584900-01
Chr02	irgsp1_rep	CDS	22557640	22557897	.	-	0	Parent=Os02t0584900-01
Chr02	irgsp1_rep	three_prime_UTR	22556916	22557639	.	-	.	Parent=Os02t0584900-01
Chr02	irgsp1_rep	mRNA	22558881	22559609	.	-	.	ID=Os02t0585100-00;Name=Os02t0585100-00;Locus_id=Os02g0585100;Note=Similar to ATFP4.;Transcript_evidence=CT835416 (DDBJ%2C Best hit);ORF_evidence=NP_001152411.1 (RefSeq);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);TENOR=Os02t0585100-00;KEGG=Os02t0585100-00
Chr02	irgsp1_rep	five_prime_UTR	22559508	22559609	.	-	.	Parent=Os02t0585100-00
Chr02	irgsp1_rep	CDS	22559502	22559507	.	-	0	Parent=Os02t0585100-00
Chr02	irgsp1_rep	CDS	22559095	22559418	.	-	0	Parent=Os02t0585100-00
Chr02	irgsp1_rep	three_prime_UTR	22558881	22559094	.	-	.	Parent=Os02t0585100-00
Chr02	irgsp1_rep	mRNA	22562006	22562946	.	-	.	ID=Os02t0585200-01;Name=Os02t0585200-01;Locus_id=Os02g0585200;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK287653 (DDBJ%2C Best hit);ORF_evidence=NP_001152411.1 (RefSeq);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);NIAS_FLcDNA=J065096F16;TENOR=Os02t0585200-01;KEGG=Os02t0585200-01
Chr02	irgsp1_rep	five_prime_UTR	22562804	22562946	.	-	.	Parent=Os02t0585200-01
Chr02	irgsp1_rep	CDS	22562798	22562803	.	-	0	Parent=Os02t0585200-01
Chr02	irgsp1_rep	CDS	22562258	22562653	.	-	0	Parent=Os02t0585200-01
Chr02	irgsp1_rep	three_prime_UTR	22562006	22562257	.	-	.	Parent=Os02t0585200-01
Chr02	irgsp1_rep	mRNA	22570480	22571271	.	-	.	ID=Os02t0585566-00;Name=Os02t0585566-00;Locus_id=Os02g0585566;Note=Conserved hypothetical protein.;Transcript_evidence=EU942641 (DDBJ);ORF_evidence=B8B603 (UniProt);TENOR=Os02t0585566-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	22570480	22571271	.	-	0	Parent=Os02t0585566-00
Chr02	irgsp1_rep	mRNA	22572227	22573341	.	+	.	ID=Os02t0585650-01;Name=Os02t0585650-01;Locus_id=Os02g0585650;Note=Hypothetical gene.;Transcript_evidence=AK318613 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100087N10;TENOR=Os02t0585650-01;KEGG=Os02t0585650-01
Chr02	irgsp1_rep	five_prime_UTR	22572227	22572629	.	+	.	Parent=Os02t0585650-01
Chr02	irgsp1_rep	CDS	22572630	22572757	.	+	0	Parent=Os02t0585650-01
Chr02	irgsp1_rep	CDS	22573178	22573265	.	+	1	Parent=Os02t0585650-01
Chr02	irgsp1_rep	three_prime_UTR	22573266	22573341	.	+	.	Parent=Os02t0585650-01
Chr02	irgsp1_rep	mRNA	22572570	22573256	.	-	.	ID=Os02t0585700-00;Name=Os02t0585700-00;Locus_id=Os02g0585700;Note=Quinonprotein alcohol dehydrogenase-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001173046.1 (RefSeq);TENOR=Os02t0585700-00;KEGG=Os02t0585700-00
Chr02	irgsp1_rep	CDS	22573178	22573256	.	-	0	Parent=Os02t0585700-00
Chr02	irgsp1_rep	CDS	22572570	22572757	.	-	2	Parent=Os02t0585700-00
Chr02	irgsp1_rep	mRNA	22579161	22580613	.	-	.	ID=Os02t0586000-01;Name=Os02t0586000-01;Locus_id=Os02g0586000;Note=Quinonprotein alcohol dehydrogenase-like domain containing protein.;Transcript_evidence=AK108975 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=002-153-E05;Expression=AK108975;TENOR=Os02t0586000-01;KEGG=Os02t0586000-01
Chr02	irgsp1_rep	five_prime_UTR	22580551	22580613	.	-	.	Parent=Os02t0586000-01
Chr02	irgsp1_rep	CDS	22580472	22580550	.	-	0	Parent=Os02t0586000-01
Chr02	irgsp1_rep	CDS	22579502	22579707	.	-	2	Parent=Os02t0586000-01
Chr02	irgsp1_rep	three_prime_UTR	22579161	22579501	.	-	.	Parent=Os02t0586000-01
Chr02	irgsp1_rep	mRNA	22599446	22602113	.	+	.	ID=Os02t0586400-01;Name=Os02t0586400-01;Locus_id=Os02g0586400;Oryzabase Gene Symbol Synonym(s)=OsRab2A2;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab2A2;Note=Similar to Small GTP-binding protein.;Transcript_evidence=AK061099 (DDBJ%2C Best hit),AK100102 (DDBJ%2C Best hit);ORF_evidence=Q43596 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: intracellular protein transport (GO:0006886),Biological Process: nucleocytoplasmic transport (GO:0006913),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Cellular Component: membrane (GO:0016020),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Ran GTPase (IPR002041),Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C Ras type (IPR020849);NIAS_FLcDNA=006-207-A09,J023004J08;Oryzabase=11076;TENOR=Os02t0586400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	22599446	22599604	.	+	.	Parent=Os02t0586400-01
Chr02	irgsp1_rep	CDS	22599605	22599650	.	+	0	Parent=Os02t0586400-01
Chr02	irgsp1_rep	CDS	22599813	22599952	.	+	2	Parent=Os02t0586400-01
Chr02	irgsp1_rep	CDS	22600674	22600756	.	+	0	Parent=Os02t0586400-01
Chr02	irgsp1_rep	CDS	22600841	22601045	.	+	1	Parent=Os02t0586400-01
Chr02	irgsp1_rep	CDS	22601131	22601199	.	+	0	Parent=Os02t0586400-01
Chr02	irgsp1_rep	CDS	22601706	22601795	.	+	0	Parent=Os02t0586400-01
Chr02	irgsp1_rep	three_prime_UTR	22601796	22602113	.	+	.	Parent=Os02t0586400-01
Chr02	irgsp1_rep	mRNA	22602419	22605754	.	-	.	ID=Os02t0586500-01;Name=Os02t0586500-01;Locus_id=Os02g0586500;Oryzabase Gene Name Synonym(s)=Sm gene%2C Sm family protein%2C smD small nucler ribonucleoprotein;Note=Similar to OSIGBa0124N08.5 protein.;Transcript_evidence=AK101525 (DDBJ%2C Best hit);ORF_evidence=Q01JN2 (UniProt);InterPro=Like-Sm ribonucleoprotein (LSM) domain (IPR001163);NIAS_FLcDNA=J033046P07;Oryzabase=15641;Expression=AK101525;TENOR=Os02t0586500-01;KEGG=Os02t0586500-01
Chr02	irgsp1_rep	five_prime_UTR	22605647	22605754	.	-	.	Parent=Os02t0586500-01
Chr02	irgsp1_rep	CDS	22605633	22605646	.	-	0	Parent=Os02t0586500-01
Chr02	irgsp1_rep	CDS	22605217	22605517	.	-	1	Parent=Os02t0586500-01
Chr02	irgsp1_rep	three_prime_UTR	22602766	22605216	.	-	.	Parent=Os02t0586500-01
Chr02	irgsp1_rep	three_prime_UTR	22602419	22602682	.	-	.	Parent=Os02t0586500-01
Chr02	irgsp1_rep	mRNA	22602418	22605737	.	-	.	ID=Os02t0586500-02;Name=Os02t0586500-02;Locus_id=Os02g0586500;Oryzabase Gene Name Synonym(s)=Sm gene%2C Sm family protein%2C smD small nucler ribonucleoprotein;Note=Similar to Small nuclear ribonucleoprotein Sm D1 (snRNP core protein D1) (Sm-D1) (Sm-D autoantigen).;Transcript_evidence=AK059067 (DDBJ%2C Best hit);ORF_evidence=Q01JN2 (UniProt);InterPro=Like-Sm ribonucleoprotein (LSM) domain (IPR001163),Like-Sm ribonucleoprotein (LSM) domain%2C eukaryotic/archaea-type (IPR006649),Like-Sm ribonucleoprotein (LSM)-related domain (IPR010920);NIAS_FLcDNA=001-021-G11;Oryzabase=15641;Expression=AK059067;TENOR=Os02t0586500-02;KEGG=Os02t0586500-02
Chr02	irgsp1_rep	five_prime_UTR	22605647	22605737	.	-	.	Parent=Os02t0586500-02
Chr02	irgsp1_rep	CDS	22605633	22605646	.	-	0	Parent=Os02t0586500-02
Chr02	irgsp1_rep	CDS	22605441	22605517	.	-	1	Parent=Os02t0586500-02
Chr02	irgsp1_rep	CDS	22602766	22602957	.	-	2	Parent=Os02t0586500-02
Chr02	irgsp1_rep	CDS	22602621	22602682	.	-	2	Parent=Os02t0586500-02
Chr02	irgsp1_rep	three_prime_UTR	22602418	22602620	.	-	.	Parent=Os02t0586500-02
Chr02	irgsp1_rep	mRNA	22607190	22609208	.	+	.	ID=Os02t0586600-00;Name=Os02t0586600-00;Locus_id=Os02g0586600;Note=Conserved hypothetical protein.;Transcript_evidence=EU955192 (DDBJ);ORF_evidence=Q6YY15 (UniProt);TENOR=Os02t0586600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	22607190	22607309	.	+	.	Parent=Os02t0586600-00
Chr02	irgsp1_rep	CDS	22607310	22609208	.	+	0	Parent=Os02t0586600-00
Chr02	irgsp1_rep	mRNA	22610683	22616587	.	-	.	ID=Os02t0586700-00;Name=Os02t0586700-00;Locus_id=Os02g0586700;Note=Conserved hypothetical protein.;Transcript_evidence=BT038324 (DDBJ);ORF_evidence=B8AEP0 (UniProt);TENOR=Os02t0586700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	22616196	22616587	.	-	0	Parent=Os02t0586700-00
Chr02	irgsp1_rep	CDS	22610683	22611157	.	-	1	Parent=Os02t0586700-00
Chr02	irgsp1_rep	mRNA	22617503	22620008	.	+	.	ID=Os02t0586800-01;Name=Os02t0586800-01;Locus_id=Os02g0586800;RAP-DB Gene Symbol Synonym(s)=OsFLU2;RAP-DB Gene Name Synonym(s)=FLUORESCENT2%2C fluorescent 2;CGSNL Gene Symbol=FLU2;CGSNL Gene Name=FLUORESCENT 2;Oryzabase Gene Symbol Synonym(s)=OsFLU2;Oryzabase Gene Name Synonym(s)=fluorescent2;Note=Homolog of fluorescent (FLU) in Arabidopsis thaliana%2C Tetratricopeptide repeat (TPR)-containing protein;Transcript_evidence=AK069595;ORF_evidence=Q6YY12;GO=Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical domain superfamily (IPR011990),Tetratricopeptide repeat-containing domain (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J023024G02;Manual Curation=July 12%2C 2019;Literature_PMID=31290959;Oryzabase=23130;Expression=AK069595;TENOR=Os02t0586800-01;KEGG=Os02t0586800-01
Chr02	irgsp1_rep	five_prime_UTR	22617503	22617631	.	+	.	Parent=Os02t0586800-01
Chr02	irgsp1_rep	CDS	22617632	22617737	.	+	0	Parent=Os02t0586800-01
Chr02	irgsp1_rep	CDS	22617853	22618010	.	+	2	Parent=Os02t0586800-01
Chr02	irgsp1_rep	CDS	22618541	22618706	.	+	0	Parent=Os02t0586800-01
Chr02	irgsp1_rep	CDS	22618807	22619124	.	+	2	Parent=Os02t0586800-01
Chr02	irgsp1_rep	CDS	22619513	22619724	.	+	2	Parent=Os02t0586800-01
Chr02	irgsp1_rep	three_prime_UTR	22619725	22620008	.	+	.	Parent=Os02t0586800-01
Chr02	irgsp1_rep	mRNA	22622384	22623158	.	+	.	ID=Os02t0586900-01;Name=Os02t0586900-01;Locus_id=Os02g0586900;Oryzabase Gene Symbol Synonym(s)=OsEnS-40%2C EnS-40;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 40;Note=Hypothetical conserved gene.;Transcript_evidence=AK105378 (DDBJ%2C Best hit);ORF_evidence=Q6YY10 (UniProt);InterPro=Glycine rich protein (IPR010800);NIAS_FLcDNA=001-120-F02;Oryzabase=18371;Expression=AK105378;TENOR=Os02t0586900-01;KEGG=Os02t0586900-01
Chr02	irgsp1_rep	five_prime_UTR	22622384	22622486	.	+	.	Parent=Os02t0586900-01
Chr02	irgsp1_rep	CDS	22622487	22622571	.	+	0	Parent=Os02t0586900-01
Chr02	irgsp1_rep	CDS	22622654	22622784	.	+	2	Parent=Os02t0586900-01
Chr02	irgsp1_rep	CDS	22622824	22622883	.	+	0	Parent=Os02t0586900-01
Chr02	irgsp1_rep	three_prime_UTR	22622884	22623158	.	+	.	Parent=Os02t0586900-01
Chr02	irgsp1_rep	mRNA	22622384	22623161	.	+	.	ID=Os02t0586900-02;Name=Os02t0586900-02;Locus_id=Os02g0586900;Oryzabase Gene Symbol Synonym(s)=OsEnS-40%2C EnS-40;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 40;Note=Similar to Glycine rich protein (Fragment).;Transcript_evidence=AK063583 (DDBJ%2C Best hit);ORF_evidence=Q6YY10 (UniProt);NIAS_FLcDNA=001-117-H12;Oryzabase=18371;Expression=AK063583;TENOR=Os02t0586900-02;KEGG=Os02t0586900-02
Chr02	irgsp1_rep	five_prime_UTR	22622384	22622486	.	+	.	Parent=Os02t0586900-02
Chr02	irgsp1_rep	CDS	22622487	22622571	.	+	0	Parent=Os02t0586900-02
Chr02	irgsp1_rep	CDS	22622654	22622883	.	+	2	Parent=Os02t0586900-02
Chr02	irgsp1_rep	three_prime_UTR	22622884	22623161	.	+	.	Parent=Os02t0586900-02
Chr02	irgsp1_rep	mRNA	22626274	22627180	.	+	.	ID=Os02t0587000-01;Name=Os02t0587000-01;Locus_id=Os02g0587000;Note=Similar to Glycine rich protein (Fragment).;Transcript_evidence=AK062460 (DDBJ%2C Best hit);ORF_evidence=A2X6L1 (UniProt);InterPro=Glycine rich protein (IPR010800);NIAS_FLcDNA=001-103-D05;Expression=AK062460;TENOR=Os02t0587000-01;KEGG=Os02t0587000-01
Chr02	irgsp1_rep	five_prime_UTR	22626274	22626381	.	+	.	Parent=Os02t0587000-01
Chr02	irgsp1_rep	CDS	22626382	22626472	.	+	0	Parent=Os02t0587000-01
Chr02	irgsp1_rep	CDS	22626605	22626876	.	+	2	Parent=Os02t0587000-01
Chr02	irgsp1_rep	three_prime_UTR	22626877	22627180	.	+	.	Parent=Os02t0587000-01
Chr02	irgsp1_rep	mRNA	22636061	22636963	.	+	.	ID=Os02t0587300-00;Name=Os02t0587300-00;Locus_id=Os02g0587300;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001047272.1 (RefSeq);TENOR=Os02t0587300-00
Chr02	irgsp1_rep	CDS	22636061	22636127	.	+	0	Parent=Os02t0587300-00
Chr02	irgsp1_rep	CDS	22636662	22636963	.	+	2	Parent=Os02t0587300-00
Chr02	irgsp1_rep	mRNA	22644916	22645593	.	+	.	ID=Os02t0587600-00;Name=Os02t0587600-00;Locus_id=Os02g0587600;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001047273.1 (RefSeq);TENOR=Os02t0587600-00
Chr02	irgsp1_rep	CDS	22644916	22644991	.	+	0	Parent=Os02t0587600-00
Chr02	irgsp1_rep	CDS	22645199	22645593	.	+	2	Parent=Os02t0587600-00
Chr02	irgsp1_rep	mRNA	22650959	22651932	.	+	.	ID=Os02t0587800-01;Name=Os02t0587800-01;Locus_id=Os02g0587800;Note=Virulence factor%2C pectin lyase fold family protein.;Transcript_evidence=AK243611 (DDBJ%2C Best hit);ORF_evidence=NP_001173047.1 (RefSeq);NIAS_FLcDNA=J100085I19;TENOR=Os02t0587800-01;KEGG=Os02t0587800-01
Chr02	irgsp1_rep	five_prime_UTR	22650959	22651024	.	+	.	Parent=Os02t0587800-01
Chr02	irgsp1_rep	CDS	22651025	22651106	.	+	0	Parent=Os02t0587800-01
Chr02	irgsp1_rep	CDS	22651315	22651652	.	+	2	Parent=Os02t0587800-01
Chr02	irgsp1_rep	three_prime_UTR	22651653	22651932	.	+	.	Parent=Os02t0587800-01
Chr02	irgsp1_rep	mRNA	22666020	22670462	.	+	.	ID=Os02t0588250-01;Name=Os02t0588250-01;Locus_id=Os02g0588250;Note=Hypothetical gene.;Transcript_evidence=AK288607 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090053C17;TENOR=Os02t0588250-01;KEGG=Os02t0588250-01
Chr02	irgsp1_rep	five_prime_UTR	22666020	22667949	.	+	.	Parent=Os02t0588250-01
Chr02	irgsp1_rep	CDS	22667950	22668177	.	+	0	Parent=Os02t0588250-01
Chr02	irgsp1_rep	three_prime_UTR	22668178	22670462	.	+	.	Parent=Os02t0588250-01
Chr02	irgsp1_rep	mRNA	22666458	22671443	.	-	.	ID=Os02t0588300-01;Name=Os02t0588300-01;Locus_id=Os02g0588300;Note=Similar to Fimbrin 1 (AtFIM1).;Transcript_evidence=AK119439 (DDBJ%2C Best hit);ORF_evidence=NP_001147889.1 (RefSeq);GO=Molecular Function: actin binding (GO:0003779),Molecular Function: protein binding (GO:0005515);InterPro=Actinin-type%2C actin-binding%2C conserved site (IPR001589),Calponin homology domain (IPR001715);NIAS_FLcDNA=001-133-B06;Expression=AK119439;TENOR=Os02t0588300-01;KEGG=Os02t0588300-01
Chr02	irgsp1_rep	five_prime_UTR	22671321	22671443	.	-	.	Parent=Os02t0588300-01
Chr02	irgsp1_rep	five_prime_UTR	22671112	22671179	.	-	.	Parent=Os02t0588300-01
Chr02	irgsp1_rep	CDS	22671025	22671111	.	-	0	Parent=Os02t0588300-01
Chr02	irgsp1_rep	CDS	22670758	22670931	.	-	0	Parent=Os02t0588300-01
Chr02	irgsp1_rep	CDS	22670416	22670663	.	-	0	Parent=Os02t0588300-01
Chr02	irgsp1_rep	CDS	22670125	22670296	.	-	1	Parent=Os02t0588300-01
Chr02	irgsp1_rep	CDS	22669422	22669460	.	-	0	Parent=Os02t0588300-01
Chr02	irgsp1_rep	CDS	22669220	22669294	.	-	0	Parent=Os02t0588300-01
Chr02	irgsp1_rep	CDS	22669010	22669126	.	-	0	Parent=Os02t0588300-01
Chr02	irgsp1_rep	CDS	22668567	22668778	.	-	0	Parent=Os02t0588300-01
Chr02	irgsp1_rep	CDS	22668195	22668347	.	-	1	Parent=Os02t0588300-01
Chr02	irgsp1_rep	CDS	22667921	22668120	.	-	1	Parent=Os02t0588300-01
Chr02	irgsp1_rep	CDS	22667366	22667523	.	-	2	Parent=Os02t0588300-01
Chr02	irgsp1_rep	CDS	22667187	22667283	.	-	0	Parent=Os02t0588300-01
Chr02	irgsp1_rep	CDS	22666981	22667072	.	-	2	Parent=Os02t0588300-01
Chr02	irgsp1_rep	CDS	22666588	22666785	.	-	0	Parent=Os02t0588300-01
Chr02	irgsp1_rep	three_prime_UTR	22666458	22666587	.	-	.	Parent=Os02t0588300-01
Chr02	irgsp1_rep	mRNA	22687278	22688848	.	+	.	ID=Os02t0588500-01;Name=Os02t0588500-01;Locus_id=Os02g0588500;Note=Hypothetical conserved gene.;Transcript_evidence=AK062989 (DDBJ%2C Best hit);ORF_evidence=Q6YY46 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: phosphoric diester hydrolase activity (GO:0008081);InterPro=PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain (IPR017946);NIAS_FLcDNA=001-109-F12;Expression=AK062989;TENOR=Os02t0588500-01;KEGG=Os02t0588500-01
Chr02	irgsp1_rep	five_prime_UTR	22687278	22687570	.	+	.	Parent=Os02t0588500-01
Chr02	irgsp1_rep	CDS	22687571	22687679	.	+	0	Parent=Os02t0588500-01
Chr02	irgsp1_rep	CDS	22688391	22688692	.	+	2	Parent=Os02t0588500-01
Chr02	irgsp1_rep	three_prime_UTR	22688693	22688848	.	+	.	Parent=Os02t0588500-01
Chr02	irgsp1_rep	mRNA	22687303	22692268	.	+	.	ID=Os02t0588500-02;Name=Os02t0588500-02;Locus_id=Os02g0588500;Note=PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain domain containing protein.;Transcript_evidence=AK100170 (DDBJ%2C Best hit),AK100542 (DDBJ%2C Best hit);ORF_evidence=XP_002864395.1 (RefSeq);GO=Biological Process: glycerol metabolic process (GO:0006071),Biological Process: lipid metabolic process (GO:0006629),Molecular Function: phosphoric diester hydrolase activity (GO:0008081),Molecular Function: glycerophosphodiester phosphodiesterase activity (GO:0008889);InterPro=Glycerophosphoryl diester phosphodiesterase (IPR004129),PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain (IPR017946);NIAS_FLcDNA=J023025E23,J023102L08;TENOR=Os02t0588500-02
Chr02	irgsp1_rep	five_prime_UTR	22687303	22687570	.	+	.	Parent=Os02t0588500-02
Chr02	irgsp1_rep	CDS	22687571	22687679	.	+	0	Parent=Os02t0588500-02
Chr02	irgsp1_rep	CDS	22688391	22688684	.	+	2	Parent=Os02t0588500-02
Chr02	irgsp1_rep	CDS	22688911	22689023	.	+	2	Parent=Os02t0588500-02
Chr02	irgsp1_rep	CDS	22689111	22689609	.	+	0	Parent=Os02t0588500-02
Chr02	irgsp1_rep	CDS	22689713	22689751	.	+	2	Parent=Os02t0588500-02
Chr02	irgsp1_rep	CDS	22689835	22690122	.	+	2	Parent=Os02t0588500-02
Chr02	irgsp1_rep	CDS	22690373	22690512	.	+	2	Parent=Os02t0588500-02
Chr02	irgsp1_rep	CDS	22691075	22691567	.	+	0	Parent=Os02t0588500-02
Chr02	irgsp1_rep	CDS	22691689	22691963	.	+	2	Parent=Os02t0588500-02
Chr02	irgsp1_rep	three_prime_UTR	22691964	22692268	.	+	.	Parent=Os02t0588500-02
Chr02	irgsp1_rep	mRNA	22690223	22693004	.	-	.	ID=Os02t0588550-00;Name=Os02t0588550-00;Locus_id=Os02g0588550;Note=Hypothetical gene.;Transcript_evidence=AK249335 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0588550-00;KEGG=Os02t0588550-00
Chr02	irgsp1_rep	five_prime_UTR	22693004	22693004	.	-	.	Parent=Os02t0588550-00
Chr02	irgsp1_rep	CDS	22692587	22693003	.	-	0	Parent=Os02t0588550-00
Chr02	irgsp1_rep	three_prime_UTR	22692334	22692586	.	-	.	Parent=Os02t0588550-00
Chr02	irgsp1_rep	three_prime_UTR	22692042	22692176	.	-	.	Parent=Os02t0588550-00
Chr02	irgsp1_rep	three_prime_UTR	22691041	22691964	.	-	.	Parent=Os02t0588550-00
Chr02	irgsp1_rep	three_prime_UTR	22690223	22690625	.	-	.	Parent=Os02t0588550-00
Chr02	irgsp1_rep	mRNA	22692610	22694029	.	+	.	ID=Os02t0588600-01;Name=Os02t0588600-01;Locus_id=Os02g0588600;Note=Conserved hypothetical protein.;Transcript_evidence=AK066774 (DDBJ%2C Best hit);ORF_evidence=B8AEP2 (UniProt);NIAS_FLcDNA=J013088N06;Expression=AK066774;TENOR=Os02t0588600-01;KEGG=Os02t0588600-01
Chr02	irgsp1_rep	five_prime_UTR	22692610	22692610	.	+	.	Parent=Os02t0588600-01
Chr02	irgsp1_rep	CDS	22692611	22692802	.	+	0	Parent=Os02t0588600-01
Chr02	irgsp1_rep	CDS	22692903	22692984	.	+	0	Parent=Os02t0588600-01
Chr02	irgsp1_rep	CDS	22693071	22693270	.	+	2	Parent=Os02t0588600-01
Chr02	irgsp1_rep	three_prime_UTR	22693271	22693493	.	+	.	Parent=Os02t0588600-01
Chr02	irgsp1_rep	three_prime_UTR	22693751	22694029	.	+	.	Parent=Os02t0588600-01
Chr02	irgsp1_rep	mRNA	22696563	22697570	.	-	.	ID=Os02t0588700-01;Name=Os02t0588700-01;Locus_id=Os02g0588700;Note=Conserved hypothetical protein.;Transcript_evidence=AK100801 (DDBJ%2C Best hit);ORF_evidence=B8AEP3 (UniProt);NIAS_FLcDNA=J023121G22;Expression=AK100801;TENOR=Os02t0588700-01;KEGG=Os02t0588700-01
Chr02	irgsp1_rep	five_prime_UTR	22697197	22697570	.	-	.	Parent=Os02t0588700-01
Chr02	irgsp1_rep	CDS	22696840	22697196	.	-	0	Parent=Os02t0588700-01
Chr02	irgsp1_rep	three_prime_UTR	22696563	22696839	.	-	.	Parent=Os02t0588700-01
Chr02	irgsp1_rep	mRNA	22707618	22707812	.	+	.	ID=Os02t0588775-00;Name=Os02t0588775-00;Locus_id=Os02g0588775;Note=Non-protein coding transcript.;Transcript_evidence=EU968429 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0588775-00
Chr02	irgsp1_rep	exon	22707618	22707812	.	+	.	Parent=Os02t0588775-00
Chr02	irgsp1_rep	mRNA	22722799	22733189	.	-	.	ID=Os02t0589000-01;Name=Os02t0589000-01;Locus_id=Os02g0589000;Note=Lecithin:cholesterol acyltransferase family protein.;Transcript_evidence=AK066288 (DDBJ%2C Best hit);ORF_evidence=B8AEP4 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: O-acyltransferase activity (GO:0008374);InterPro=Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase (IPR003386);NIAS_FLcDNA=J013062H23;Expression=AK066288;TENOR=Os02t0589000-01;KEGG=Os02t0589000-01
Chr02	irgsp1_rep	five_prime_UTR	22733161	22733189	.	-	.	Parent=Os02t0589000-01
Chr02	irgsp1_rep	CDS	22732742	22733160	.	-	0	Parent=Os02t0589000-01
Chr02	irgsp1_rep	CDS	22722827	22723715	.	-	1	Parent=Os02t0589000-01
Chr02	irgsp1_rep	three_prime_UTR	22722799	22722826	.	-	.	Parent=Os02t0589000-01
Chr02	irgsp1_rep	mRNA	22726411	22726713	.	-	.	ID=Os02t0589100-00;Name=Os02t0589100-00;Locus_id=Os02g0589100;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9F0T1 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: O-acyltransferase activity (GO:0008374);InterPro=Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase (IPR003386);TENOR=Os02t0589100-00;KEGG=Os02t0589100-00
Chr02	irgsp1_rep	CDS	22726411	22726713	.	-	0	Parent=Os02t0589100-00
Chr02	irgsp1_rep	mRNA	22741593	22743361	.	-	.	ID=Os02t0589400-01;Name=Os02t0589400-01;Locus_id=Os02g0589400;Oryzabase Gene Symbol Synonym(s)=UGT;Oryzabase Gene Name Synonym(s)=flavone/flavanone C-hexosyltransferase;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK287546 (DDBJ%2C Best hit);ORF_evidence=NP_001047279.2 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J065017I15;Oryzabase=18237;TENOR=Os02t0589400-01;KEGG=Os02t0589400-01
Chr02	irgsp1_rep	five_prime_UTR	22743251	22743361	.	-	.	Parent=Os02t0589400-01
Chr02	irgsp1_rep	CDS	22741955	22743250	.	-	0	Parent=Os02t0589400-01
Chr02	irgsp1_rep	three_prime_UTR	22741593	22741954	.	-	.	Parent=Os02t0589400-01
Chr02	irgsp1_rep	mRNA	22742580	22743011	.	+	.	ID=Os02t0589450-00;Name=Os02t0589450-00;Locus_id=Os02g0589450;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os02t0589450-00
Chr02	irgsp1_rep	CDS	22742580	22743011	.	+	0	Parent=Os02t0589450-00
Chr02	irgsp1_rep	mRNA	22743536	22744371	.	-	.	ID=Os02t0589500-00;Name=Os02t0589500-00;Locus_id=Os02g0589500;Note=Hypothetical gene.;Transcript_evidence=CT833170 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os02t0589500-00;KEGG=Os02t0589500-00
Chr02	irgsp1_rep	five_prime_UTR	22744245	22744371	.	-	.	Parent=Os02t0589500-00
Chr02	irgsp1_rep	CDS	22743729	22744244	.	-	0	Parent=Os02t0589500-00
Chr02	irgsp1_rep	three_prime_UTR	22743536	22743728	.	-	.	Parent=Os02t0589500-00
Chr02	irgsp1_rep	mRNA	22743750	22746447	.	+	.	ID=Os02t0589600-01;Name=Os02t0589600-01;Locus_id=Os02g0589600;Note=Hypothetical conserved gene.;Transcript_evidence=AK119335 (DDBJ%2C Best hit);ORF_evidence=NP_001065614.1 (RefSeq);NIAS_FLcDNA=001-131-C06;Expression=AK119335;TENOR=Os02t0589600-01;KEGG=Os02t0589600-01
Chr02	irgsp1_rep	five_prime_UTR	22743750	22743751	.	+	.	Parent=Os02t0589600-01
Chr02	irgsp1_rep	CDS	22743752	22744174	.	+	0	Parent=Os02t0589600-01
Chr02	irgsp1_rep	three_prime_UTR	22744175	22746447	.	+	.	Parent=Os02t0589600-01
Chr02	irgsp1_rep	mRNA	22757091	22758212	.	-	.	ID=Os02t0589700-00;Name=Os02t0589700-00;Locus_id=Os02g0589700;Note=Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001047281.2 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: O-acyltransferase activity (GO:0008374);InterPro=Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase (IPR003386);TENOR=Os02t0589700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	22757803	22758212	.	-	0	Parent=Os02t0589700-00
Chr02	irgsp1_rep	CDS	22757091	22757658	.	-	1	Parent=Os02t0589700-00
Chr02	irgsp1_rep	mRNA	22761941	22778592	.	-	.	ID=Os02t0589900-00;Name=Os02t0589900-00;Locus_id=Os02g0589900;Note=Hypothetical conserved gene.;Transcript_evidence=BT055325 (DDBJ);ORF_evidence=NP_001047278.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: O-acyltransferase activity (GO:0008374);InterPro=Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase (IPR003386);TENOR=Os02t0589900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	22778269	22778592	.	-	0	Parent=Os02t0589900-00
Chr02	irgsp1_rep	three_prime_UTR	22778073	22778268	.	-	.	Parent=Os02t0589900-00
Chr02	irgsp1_rep	three_prime_UTR	22777382	22777505	.	-	.	Parent=Os02t0589900-00
Chr02	irgsp1_rep	three_prime_UTR	22774440	22774572	.	-	.	Parent=Os02t0589900-00
Chr02	irgsp1_rep	three_prime_UTR	22765804	22766327	.	-	.	Parent=Os02t0589900-00
Chr02	irgsp1_rep	three_prime_UTR	22761941	22762088	.	-	.	Parent=Os02t0589900-00
Chr02	irgsp1_rep	mRNA	22782750	22783121	.	-	.	ID=Os02t0590000-00;Name=Os02t0590000-00;Locus_id=Os02g0590000;Note=Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001047282.2 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: O-acyltransferase activity (GO:0008374);InterPro=Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase (IPR003386);TENOR=Os02t0590000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	22782750	22783121	.	-	0	Parent=Os02t0590000-00
Chr02	irgsp1_rep	mRNA	22789881	22791737	.	-	.	ID=Os02t0590200-01;Name=Os02t0590200-01;Locus_id=Os02g0590200;Note=Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase domain containing protein.;Transcript_evidence=AK241245 (DDBJ%2C Best hit);ORF_evidence=NP_001047281.2 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: O-acyltransferase activity (GO:0008374);InterPro=Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase (IPR003386);NIAS_FLcDNA=J065128P17;TENOR=Os02t0590200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	22791687	22791737	.	-	.	Parent=Os02t0590200-01
Chr02	irgsp1_rep	CDS	22791283	22791686	.	-	0	Parent=Os02t0590200-01
Chr02	irgsp1_rep	CDS	22790952	22790982	.	-	1	Parent=Os02t0590200-01
Chr02	irgsp1_rep	three_prime_UTR	22789881	22790951	.	-	.	Parent=Os02t0590200-01
Chr02	irgsp1_rep	mRNA	22805733	22808493	.	-	.	ID=Os02t0590400-01;Name=Os02t0590400-01;Locus_id=Os02g0590400;Note=Lecithin:cholesterol acyltransferase family protein.;Transcript_evidence=AK061704 (DDBJ%2C Best hit);ORF_evidence=NP_001047278.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: O-acyltransferase activity (GO:0008374);InterPro=Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase (IPR003386);NIAS_FLcDNA=001-037-E05;TENOR=Os02t0590400-01
Chr02	irgsp1_rep	five_prime_UTR	22808304	22808493	.	-	.	Parent=Os02t0590400-01
Chr02	irgsp1_rep	CDS	22807888	22808303	.	-	0	Parent=Os02t0590400-01
Chr02	irgsp1_rep	CDS	22805848	22806754	.	-	1	Parent=Os02t0590400-01
Chr02	irgsp1_rep	three_prime_UTR	22805733	22805847	.	-	.	Parent=Os02t0590400-01
Chr02	irgsp1_rep	mRNA	22805689	22808343	.	-	.	ID=Os02t0590400-02;Name=Os02t0590400-02;Locus_id=Os02g0590400;Note=Lecithin:cholesterol acyltransferase family protein.;Transcript_evidence=AK061356 (DDBJ%2C Best hit);ORF_evidence=NP_001047278.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: O-acyltransferase activity (GO:0008374);InterPro=Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase (IPR003386);NIAS_FLcDNA=006-304-B04;TENOR=Os02t0590400-02;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	22808304	22808343	.	-	.	Parent=Os02t0590400-02
Chr02	irgsp1_rep	CDS	22807888	22808303	.	-	0	Parent=Os02t0590400-02
Chr02	irgsp1_rep	CDS	22805848	22806754	.	-	1	Parent=Os02t0590400-02
Chr02	irgsp1_rep	three_prime_UTR	22805689	22805847	.	-	.	Parent=Os02t0590400-02
Chr02	irgsp1_rep	mRNA	22805733	22808462	.	-	.	ID=Os02t0590400-03;Name=Os02t0590400-03;Locus_id=Os02g0590400;Note=Lecithin:cholesterol acyltransferase family protein.;Transcript_evidence=AK104403 (DDBJ%2C Best hit),AK099196 (DDBJ%2C Best hit);ORF_evidence=NP_001047278.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: O-acyltransferase activity (GO:0008374);InterPro=Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase (IPR003386);NIAS_FLcDNA=006-202-H05,J023114E18;TENOR=Os02t0590400-03
Chr02	irgsp1_rep	five_prime_UTR	22808304	22808462	.	-	.	Parent=Os02t0590400-03
Chr02	irgsp1_rep	CDS	22807888	22808303	.	-	0	Parent=Os02t0590400-03
Chr02	irgsp1_rep	CDS	22805848	22806754	.	-	1	Parent=Os02t0590400-03
Chr02	irgsp1_rep	three_prime_UTR	22805733	22805847	.	-	.	Parent=Os02t0590400-03
Chr02	irgsp1_rep	mRNA	22820217	22828726	.	+	.	ID=Os02t0590700-01;Name=Os02t0590700-01;Locus_id=Os02g0590700;Note=Hypothetical gene.;Transcript_evidence=AK100917 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J023133E20;Expression=AK100917;TENOR=Os02t0590700-01;KEGG=Os02t0590700-01
Chr02	irgsp1_rep	five_prime_UTR	22820217	22820217	.	+	.	Parent=Os02t0590700-01
Chr02	irgsp1_rep	CDS	22820218	22820307	.	+	0	Parent=Os02t0590700-01
Chr02	irgsp1_rep	CDS	22820397	22820483	.	+	0	Parent=Os02t0590700-01
Chr02	irgsp1_rep	CDS	22820783	22820842	.	+	0	Parent=Os02t0590700-01
Chr02	irgsp1_rep	three_prime_UTR	22820843	22823725	.	+	.	Parent=Os02t0590700-01
Chr02	irgsp1_rep	three_prime_UTR	22824809	22824934	.	+	.	Parent=Os02t0590700-01
Chr02	irgsp1_rep	three_prime_UTR	22825028	22825464	.	+	.	Parent=Os02t0590700-01
Chr02	irgsp1_rep	three_prime_UTR	22825549	22825918	.	+	.	Parent=Os02t0590700-01
Chr02	irgsp1_rep	three_prime_UTR	22827748	22828726	.	+	.	Parent=Os02t0590700-01
Chr02	irgsp1_rep	mRNA	22820306	22828115	.	+	.	ID=Os02t0590700-02;Name=Os02t0590700-02;Locus_id=Os02g0590700;Note=Conserved hypothetical protein.;Transcript_evidence=AK068984 (DDBJ%2C Best hit);ORF_evidence=B9F0T6 (UniProt);NIAS_FLcDNA=J023003M09;Expression=AK068984;TENOR=Os02t0590700-02;KEGG=Os02t0590700-02
Chr02	irgsp1_rep	five_prime_UTR	22820306	22820483	.	+	.	Parent=Os02t0590700-02
Chr02	irgsp1_rep	five_prime_UTR	22820783	22820861	.	+	.	Parent=Os02t0590700-02
Chr02	irgsp1_rep	five_prime_UTR	22823577	22823725	.	+	.	Parent=Os02t0590700-02
Chr02	irgsp1_rep	five_prime_UTR	22824535	22824622	.	+	.	Parent=Os02t0590700-02
Chr02	irgsp1_rep	five_prime_UTR	22824748	22824934	.	+	.	Parent=Os02t0590700-02
Chr02	irgsp1_rep	five_prime_UTR	22825028	22825113	.	+	.	Parent=Os02t0590700-02
Chr02	irgsp1_rep	five_prime_UTR	22825182	22825271	.	+	.	Parent=Os02t0590700-02
Chr02	irgsp1_rep	CDS	22825272	22825464	.	+	0	Parent=Os02t0590700-02
Chr02	irgsp1_rep	CDS	22825539	22825603	.	+	2	Parent=Os02t0590700-02
Chr02	irgsp1_rep	three_prime_UTR	22825604	22825918	.	+	.	Parent=Os02t0590700-02
Chr02	irgsp1_rep	three_prime_UTR	22827748	22828115	.	+	.	Parent=Os02t0590700-02
Chr02	irgsp1_rep	mRNA	22822064	22826220	.	-	.	ID=Os02t0590800-01;Name=Os02t0590800-01;Locus_id=Os02g0590800;RAP-DB Gene Symbol Synonym(s)=OsNek6;RAP-DB Gene Name Synonym(s)=NIMA-related kinase 6;Oryzabase Gene Symbol Synonym(s)=OsNek6;Oryzabase Gene Name Synonym(s)=NIMA-related kinase 6;Note=Tubulin complex-related serine/threonine protein kinase;Transcript_evidence=Q6YY75 (UniProt),Inferred from literature;ORF_evidence=Q6YY75;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),Protein kinase domain (IPR000719),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);Manual Curation=August 7%2C 2020;Literature_PMID=22067990,21719639;Oryzabase=9921;TENOR=Os02t0590800-00;KEGG=Os02t0590800-00 (EC:2.7.11.1);Subcellular location=cytoplasm (GO:0005737)
Chr02	irgsp1_rep	five_prime_UTR	22825887	22826220	.	-	.	Parent=Os02t0590800-01
Chr02	irgsp1_rep	CDS	22825801	22825886	.	-	0	Parent=Os02t0590800-01
Chr02	irgsp1_rep	CDS	22825637	22825703	.	-	1	Parent=Os02t0590800-01
Chr02	irgsp1_rep	CDS	22825316	22825381	.	-	0	Parent=Os02t0590800-01
Chr02	irgsp1_rep	CDS	22825164	22825210	.	-	0	Parent=Os02t0590800-01
Chr02	irgsp1_rep	CDS	22825020	22825065	.	-	1	Parent=Os02t0590800-01
Chr02	irgsp1_rep	CDS	22824826	22824906	.	-	0	Parent=Os02t0590800-01
Chr02	irgsp1_rep	CDS	22824696	22824738	.	-	0	Parent=Os02t0590800-01
Chr02	irgsp1_rep	CDS	22824548	22824594	.	-	2	Parent=Os02t0590800-01
Chr02	irgsp1_rep	CDS	22823693	22823774	.	-	0	Parent=Os02t0590800-01
Chr02	irgsp1_rep	CDS	22823560	22823609	.	-	2	Parent=Os02t0590800-01
Chr02	irgsp1_rep	CDS	22823403	22823476	.	-	0	Parent=Os02t0590800-01
Chr02	irgsp1_rep	CDS	22823266	22823317	.	-	1	Parent=Os02t0590800-01
Chr02	irgsp1_rep	CDS	22822315	22823178	.	-	0	Parent=Os02t0590800-01
Chr02	irgsp1_rep	three_prime_UTR	22822064	22822314	.	-	.	Parent=Os02t0590800-01
Chr02	irgsp1_rep	mRNA	22831661	22832116	.	+	.	ID=Os02t0590850-00;Name=Os02t0590850-00;Locus_id=Os02g0590850;Note=Non-protein coding transcript.;Transcript_evidence=CT835426 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os02t0590850-00
Chr02	irgsp1_rep	exon	22831661	22832116	.	+	.	Parent=Os02t0590850-00
Chr02	irgsp1_rep	mRNA	22836027	22838425	.	+	.	ID=Os02t0591000-01;Name=Os02t0591000-01;Locus_id=Os02g0591000;Note=Conserved hypothetical protein.;Transcript_evidence=AK068298 (DDBJ%2C Best hit);ORF_evidence=NP_001173508.1 (RefSeq);NIAS_FLcDNA=J013146L01;TENOR=Os02t0591000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	22836027	22837727	.	+	.	Parent=Os02t0591000-01
Chr02	irgsp1_rep	CDS	22837728	22837818	.	+	0	Parent=Os02t0591000-01
Chr02	irgsp1_rep	CDS	22838017	22838111	.	+	2	Parent=Os02t0591000-01
Chr02	irgsp1_rep	three_prime_UTR	22838112	22838425	.	+	.	Parent=Os02t0591000-01
Chr02	irgsp1_rep	mRNA	22836063	22838425	.	+	.	ID=Os02t0591000-02;Name=Os02t0591000-02;Locus_id=Os02g0591000;Note=Conserved hypothetical protein.;Transcript_evidence=AK059919 (DDBJ%2C Best hit);ORF_evidence=NP_001173508.1 (RefSeq);NIAS_FLcDNA=006-209-F12;TENOR=Os02t0591000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	22836063	22836194	.	+	.	Parent=Os02t0591000-02
Chr02	irgsp1_rep	five_prime_UTR	22836335	22836429	.	+	.	Parent=Os02t0591000-02
Chr02	irgsp1_rep	five_prime_UTR	22836728	22837123	.	+	.	Parent=Os02t0591000-02
Chr02	irgsp1_rep	five_prime_UTR	22837690	22837727	.	+	.	Parent=Os02t0591000-02
Chr02	irgsp1_rep	CDS	22837728	22837818	.	+	0	Parent=Os02t0591000-02
Chr02	irgsp1_rep	CDS	22838017	22838111	.	+	2	Parent=Os02t0591000-02
Chr02	irgsp1_rep	three_prime_UTR	22838112	22838425	.	+	.	Parent=Os02t0591000-02
Chr02	irgsp1_rep	mRNA	22866024	22870108	.	+	.	ID=Os02t0591500-01;Name=Os02t0591500-01;Locus_id=Os02g0591500;RAP-DB Gene Symbol Synonym(s)=OSD1;RAP-DB Gene Name Synonym(s)=OMISSION OF SECOND DIVISION;CGSNL Gene Symbol=OSD1;CGSNL Gene Name=OMISSION OF SECOND DIVISION 1;Oryzabase Gene Symbol Synonym(s)=OsOSD1;Note=Meiotic processes;Transcript_evidence=AK241753;ORF_evidence=B7F906;NIAS_FLcDNA=J065203O18;Manual Curation=March 28%2C 2019;Literature_PMID=30610223;Oryzabase=23028;TENOR=Os02t0591500-01;KEGG=Os02t0591500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	22866024	22866159	.	+	.	Parent=Os02t0591500-01
Chr02	irgsp1_rep	five_prime_UTR	22866486	22866486	.	+	.	Parent=Os02t0591500-01
Chr02	irgsp1_rep	CDS	22866487	22866747	.	+	0	Parent=Os02t0591500-01
Chr02	irgsp1_rep	CDS	22869103	22869546	.	+	0	Parent=Os02t0591500-01
Chr02	irgsp1_rep	three_prime_UTR	22869547	22870108	.	+	.	Parent=Os02t0591500-01
Chr02	irgsp1_rep	mRNA	22872113	22880241	.	-	.	ID=Os02t0591600-01;Name=Os02t0591600-01;Locus_id=Os02g0591600;Oryzabase Gene Symbol Synonym(s)=OsWD40-46;Note=WD40 repeat domain containing protein.;Transcript_evidence=AK102016 (DDBJ%2C Best hit);ORF_evidence=B8AEP7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775);NIAS_FLcDNA=J033080F08;Oryzabase=10727;TENOR=Os02t0591600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	22880123	22880241	.	-	0	Parent=Os02t0591600-01
Chr02	irgsp1_rep	CDS	22879907	22880026	.	-	1	Parent=Os02t0591600-01
Chr02	irgsp1_rep	CDS	22879717	22879816	.	-	1	Parent=Os02t0591600-01
Chr02	irgsp1_rep	CDS	22878546	22878602	.	-	0	Parent=Os02t0591600-01
Chr02	irgsp1_rep	CDS	22878352	22878398	.	-	0	Parent=Os02t0591600-01
Chr02	irgsp1_rep	CDS	22878148	22878181	.	-	1	Parent=Os02t0591600-01
Chr02	irgsp1_rep	CDS	22877103	22877193	.	-	0	Parent=Os02t0591600-01
Chr02	irgsp1_rep	CDS	22876270	22876361	.	-	2	Parent=Os02t0591600-01
Chr02	irgsp1_rep	CDS	22875906	22875980	.	-	0	Parent=Os02t0591600-01
Chr02	irgsp1_rep	CDS	22875673	22875764	.	-	0	Parent=Os02t0591600-01
Chr02	irgsp1_rep	CDS	22875091	22875220	.	-	1	Parent=Os02t0591600-01
Chr02	irgsp1_rep	CDS	22874788	22874877	.	-	0	Parent=Os02t0591600-01
Chr02	irgsp1_rep	CDS	22874598	22874657	.	-	0	Parent=Os02t0591600-01
Chr02	irgsp1_rep	CDS	22873709	22873800	.	-	0	Parent=Os02t0591600-01
Chr02	irgsp1_rep	CDS	22873462	22873527	.	-	1	Parent=Os02t0591600-01
Chr02	irgsp1_rep	CDS	22873299	22873362	.	-	1	Parent=Os02t0591600-01
Chr02	irgsp1_rep	CDS	22873012	22873103	.	-	0	Parent=Os02t0591600-01
Chr02	irgsp1_rep	CDS	22872788	22872908	.	-	1	Parent=Os02t0591600-01
Chr02	irgsp1_rep	CDS	22872598	22872654	.	-	0	Parent=Os02t0591600-01
Chr02	irgsp1_rep	three_prime_UTR	22872113	22872597	.	-	.	Parent=Os02t0591600-01
Chr02	irgsp1_rep	mRNA	22879047	22880235	.	-	.	ID=Os02t0591600-02;Name=Os02t0591600-02;Locus_id=Os02g0591600;Oryzabase Gene Symbol Synonym(s)=OsWD40-46;Note=Conserved hypothetical protein.;Transcript_evidence=AK060151 (DDBJ%2C Best hit);ORF_evidence=B8AEP7 (UniProt);NIAS_FLcDNA=006-310-E04;Oryzabase=10727;TENOR=Os02t0591600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	22880234	22880235	.	-	.	Parent=Os02t0591600-02
Chr02	irgsp1_rep	CDS	22880127	22880233	.	-	0	Parent=Os02t0591600-02
Chr02	irgsp1_rep	CDS	22879907	22880026	.	-	1	Parent=Os02t0591600-02
Chr02	irgsp1_rep	CDS	22879624	22879816	.	-	1	Parent=Os02t0591600-02
Chr02	irgsp1_rep	three_prime_UTR	22879047	22879623	.	-	.	Parent=Os02t0591600-02
Chr02	irgsp1_rep	mRNA	22882165	22884156	.	-	.	ID=Os02t0591700-01;Name=Os02t0591700-01;Locus_id=Os02g0591700;Note=Similar to Candida glabrata strain CBS138 Chromosome L complete sequence.;Transcript_evidence=AK072777 (DDBJ%2C Best hit);ORF_evidence=A2X6N1 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L6E (IPR000915),Ribosomal protein L6%2C N-terminal (IPR005568),Translation protein SH3-like%2C subgroup (IPR014722);NIAS_FLcDNA=J023139B06;Expression=AK072777;TENOR=Os02t0591700-01;KEGG=Os02t0591700-01
Chr02	irgsp1_rep	five_prime_UTR	22884088	22884156	.	-	.	Parent=Os02t0591700-01
Chr02	irgsp1_rep	CDS	22883873	22884087	.	-	0	Parent=Os02t0591700-01
Chr02	irgsp1_rep	CDS	22883669	22883775	.	-	1	Parent=Os02t0591700-01
Chr02	irgsp1_rep	CDS	22882650	22882831	.	-	2	Parent=Os02t0591700-01
Chr02	irgsp1_rep	CDS	22882400	22882555	.	-	0	Parent=Os02t0591700-01
Chr02	irgsp1_rep	three_prime_UTR	22882165	22882399	.	-	.	Parent=Os02t0591700-01
Chr02	irgsp1_rep	mRNA	22885252	22888126	.	-	.	ID=Os02t0591800-01;Name=Os02t0591800-01;Locus_id=Os02g0591800;Note=Brix domain containing protein.;Transcript_evidence=AK060611 (DDBJ%2C Best hit);ORF_evidence=B6TPS2 (UniProt);GO=Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: ATP binding (GO:0005524);InterPro=Anticodon-binding (IPR004154),Brix domain (IPR007109);NIAS_FLcDNA=001-025-E06;Expression=AK060611;TENOR=Os02t0591800-01;KEGG=Os02t0591800-01
Chr02	irgsp1_rep	five_prime_UTR	22888049	22888126	.	-	.	Parent=Os02t0591800-01
Chr02	irgsp1_rep	CDS	22887807	22888048	.	-	0	Parent=Os02t0591800-01
Chr02	irgsp1_rep	CDS	22887540	22887681	.	-	1	Parent=Os02t0591800-01
Chr02	irgsp1_rep	CDS	22887118	22887196	.	-	0	Parent=Os02t0591800-01
Chr02	irgsp1_rep	CDS	22886900	22887024	.	-	2	Parent=Os02t0591800-01
Chr02	irgsp1_rep	CDS	22886189	22886290	.	-	0	Parent=Os02t0591800-01
Chr02	irgsp1_rep	CDS	22886011	22886079	.	-	0	Parent=Os02t0591800-01
Chr02	irgsp1_rep	CDS	22885827	22885925	.	-	0	Parent=Os02t0591800-01
Chr02	irgsp1_rep	CDS	22885397	22885534	.	-	0	Parent=Os02t0591800-01
Chr02	irgsp1_rep	three_prime_UTR	22885252	22885396	.	-	.	Parent=Os02t0591800-01
Chr02	irgsp1_rep	mRNA	22885246	22888099	.	-	.	ID=Os02t0591800-02;Name=Os02t0591800-02;Locus_id=Os02g0591800;Note=Brix domain containing protein.;Transcript_evidence=AK102534 (DDBJ%2C Best hit);ORF_evidence=B6TPS2 (UniProt);GO=Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: ATP binding (GO:0005524);InterPro=Anticodon-binding (IPR004154),Brix domain (IPR007109);NIAS_FLcDNA=J033096G24;TENOR=Os02t0591800-02
Chr02	irgsp1_rep	five_prime_UTR	22888049	22888099	.	-	.	Parent=Os02t0591800-02
Chr02	irgsp1_rep	CDS	22887807	22888048	.	-	0	Parent=Os02t0591800-02
Chr02	irgsp1_rep	CDS	22887540	22887681	.	-	1	Parent=Os02t0591800-02
Chr02	irgsp1_rep	CDS	22887118	22887196	.	-	0	Parent=Os02t0591800-02
Chr02	irgsp1_rep	CDS	22886900	22887024	.	-	2	Parent=Os02t0591800-02
Chr02	irgsp1_rep	CDS	22886189	22886290	.	-	0	Parent=Os02t0591800-02
Chr02	irgsp1_rep	CDS	22886011	22886079	.	-	0	Parent=Os02t0591800-02
Chr02	irgsp1_rep	CDS	22885827	22885925	.	-	0	Parent=Os02t0591800-02
Chr02	irgsp1_rep	CDS	22885397	22885534	.	-	0	Parent=Os02t0591800-02
Chr02	irgsp1_rep	three_prime_UTR	22885246	22885396	.	-	.	Parent=Os02t0591800-02
Chr02	irgsp1_rep	mRNA	22888409	22888823	.	+	.	ID=Os02t0591850-01;Name=Os02t0591850-01;Locus_id=Os02g0591850;Note=Non-protein coding transcript.;Transcript_evidence=AK242359 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080025D13;TENOR=Os02t0591850-01
Chr02	irgsp1_rep	exon	22888409	22888823	.	+	.	Parent=Os02t0591850-01
Chr02	irgsp1_rep	mRNA	22892318	22897273	.	+	.	ID=Os02t0591900-01;Name=Os02t0591900-01;Locus_id=Os02g0591900;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK060750 (DDBJ%2C Best hit);ORF_evidence=Q69L76 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-032-G02;TENOR=Os02t0591900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	22892318	22892513	.	+	.	Parent=Os02t0591900-01
Chr02	irgsp1_rep	five_prime_UTR	22893579	22893599	.	+	.	Parent=Os02t0591900-01
Chr02	irgsp1_rep	CDS	22893600	22894063	.	+	0	Parent=Os02t0591900-01
Chr02	irgsp1_rep	CDS	22894454	22894619	.	+	1	Parent=Os02t0591900-01
Chr02	irgsp1_rep	CDS	22894703	22894753	.	+	0	Parent=Os02t0591900-01
Chr02	irgsp1_rep	CDS	22894960	22895185	.	+	0	Parent=Os02t0591900-01
Chr02	irgsp1_rep	CDS	22895272	22895291	.	+	2	Parent=Os02t0591900-01
Chr02	irgsp1_rep	three_prime_UTR	22895292	22895368	.	+	.	Parent=Os02t0591900-01
Chr02	irgsp1_rep	three_prime_UTR	22895882	22896570	.	+	.	Parent=Os02t0591900-01
Chr02	irgsp1_rep	three_prime_UTR	22896662	22897273	.	+	.	Parent=Os02t0591900-01
Chr02	irgsp1_rep	mRNA	22892512	22897425	.	+	.	ID=Os02t0591900-02;Name=Os02t0591900-02;Locus_id=Os02g0591900;Note=Similar to protein kinase family protein.;Transcript_evidence=AK072774 (DDBJ%2C Best hit);ORF_evidence=NP_850199.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023140C12;Expression=AK072774;TENOR=Os02t0591900-02;KEGG=Os02t0591900-02
Chr02	irgsp1_rep	five_prime_UTR	22892512	22892608	.	+	.	Parent=Os02t0591900-02
Chr02	irgsp1_rep	five_prime_UTR	22893556	22893599	.	+	.	Parent=Os02t0591900-02
Chr02	irgsp1_rep	CDS	22893600	22894063	.	+	0	Parent=Os02t0591900-02
Chr02	irgsp1_rep	CDS	22894454	22894619	.	+	1	Parent=Os02t0591900-02
Chr02	irgsp1_rep	CDS	22894703	22894753	.	+	0	Parent=Os02t0591900-02
Chr02	irgsp1_rep	CDS	22894960	22895139	.	+	0	Parent=Os02t0591900-02
Chr02	irgsp1_rep	CDS	22895269	22895368	.	+	0	Parent=Os02t0591900-02
Chr02	irgsp1_rep	CDS	22895882	22896570	.	+	2	Parent=Os02t0591900-02
Chr02	irgsp1_rep	CDS	22896662	22897015	.	+	0	Parent=Os02t0591900-02
Chr02	irgsp1_rep	three_prime_UTR	22897016	22897425	.	+	.	Parent=Os02t0591900-02
Chr02	irgsp1_rep	mRNA	22892654	22897338	.	+	.	ID=Os02t0591900-03;Name=Os02t0591900-03;Locus_id=Os02g0591900;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK100504 (DDBJ%2C Best hit);ORF_evidence=Q69L76 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023099K09;TENOR=Os02t0591900-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	22892654	22893599	.	+	.	Parent=Os02t0591900-03
Chr02	irgsp1_rep	CDS	22893600	22894063	.	+	0	Parent=Os02t0591900-03
Chr02	irgsp1_rep	CDS	22894454	22894619	.	+	1	Parent=Os02t0591900-03
Chr02	irgsp1_rep	CDS	22894703	22894753	.	+	0	Parent=Os02t0591900-03
Chr02	irgsp1_rep	CDS	22894960	22895185	.	+	0	Parent=Os02t0591900-03
Chr02	irgsp1_rep	CDS	22895272	22895291	.	+	2	Parent=Os02t0591900-03
Chr02	irgsp1_rep	three_prime_UTR	22895292	22895368	.	+	.	Parent=Os02t0591900-03
Chr02	irgsp1_rep	three_prime_UTR	22895882	22896570	.	+	.	Parent=Os02t0591900-03
Chr02	irgsp1_rep	three_prime_UTR	22896662	22897338	.	+	.	Parent=Os02t0591900-03
Chr02	irgsp1_rep	mRNA	22900707	22910523	.	-	.	ID=Os02t0592000-00;Name=Os02t0592000-00;Locus_id=Os02g0592000;Note=Similar to OSIGBa0106G07.8 protein.;Transcript_evidence=AK361746 (DDBJ);ORF_evidence=Q01IX6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);TENOR=Os02t0592000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	22910514	22910523	.	-	.	Parent=Os02t0592000-00
Chr02	irgsp1_rep	CDS	22910176	22910513	.	-	0	Parent=Os02t0592000-00
Chr02	irgsp1_rep	CDS	22901176	22901491	.	-	1	Parent=Os02t0592000-00
Chr02	irgsp1_rep	CDS	22900713	22900955	.	-	0	Parent=Os02t0592000-00
Chr02	irgsp1_rep	three_prime_UTR	22900707	22900712	.	-	.	Parent=Os02t0592000-00
Chr02	irgsp1_rep	mRNA	22911011	22915632	.	-	.	ID=Os02t0592200-01;Name=Os02t0592200-01;Locus_id=Os02g0592200;Note=Similar to alkaline phosphatase D.;Transcript_evidence=AK069742 (DDBJ%2C Best hit);ORF_evidence=NP_001149298.1 (RefSeq);InterPro=Alkaline phosphatase D-related (IPR018946);NIAS_FLcDNA=J023030E07;Expression=AK069742;TENOR=Os02t0592200-01;KEGG=Os02t0592200-01
Chr02	irgsp1_rep	five_prime_UTR	22915608	22915632	.	-	.	Parent=Os02t0592200-01
Chr02	irgsp1_rep	CDS	22915464	22915607	.	-	0	Parent=Os02t0592200-01
Chr02	irgsp1_rep	CDS	22915140	22915367	.	-	0	Parent=Os02t0592200-01
Chr02	irgsp1_rep	CDS	22914581	22914702	.	-	0	Parent=Os02t0592200-01
Chr02	irgsp1_rep	CDS	22914276	22914336	.	-	1	Parent=Os02t0592200-01
Chr02	irgsp1_rep	CDS	22913561	22913701	.	-	0	Parent=Os02t0592200-01
Chr02	irgsp1_rep	CDS	22913034	22913141	.	-	0	Parent=Os02t0592200-01
Chr02	irgsp1_rep	CDS	22912153	22912381	.	-	0	Parent=Os02t0592200-01
Chr02	irgsp1_rep	CDS	22911748	22911996	.	-	2	Parent=Os02t0592200-01
Chr02	irgsp1_rep	CDS	22911355	22911437	.	-	2	Parent=Os02t0592200-01
Chr02	irgsp1_rep	three_prime_UTR	22911011	22911354	.	-	.	Parent=Os02t0592200-01
Chr02	irgsp1_rep	mRNA	22922674	22924462	.	-	.	ID=Os02t0592300-01;Name=Os02t0592300-01;Locus_id=Os02g0592300;Oryzabase Gene Symbol Synonym(s)=OsPMS1%2C OsPMS2;Oryzabase Gene Name Synonym(s)=mismatch repair protein OsPMS1;Note=Similar to predicted protein.;Transcript_evidence=AK073685 (DDBJ%2C Best hit);ORF_evidence=NP_567236.1 (RefSeq);GO=Biological Process: mismatch repair (GO:0006298),Molecular Function: ATP binding (GO:0005524),Molecular Function: mismatched DNA binding (GO:0030983);InterPro=DNA mismatch repair protein (IPR002099),ATPase-like%2C ATP-binding domain (IPR003594),DNA mismatch repair protein%2C C-terminal (IPR013507),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),DNA mismatch repair%2C conserved site (IPR014762),DNA mismatch repair protein%2C N-terminal (IPR014763),Post Meiotic Segregation 2 (IPR015434),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=J033060I11;Oryzabase=11523;TENOR=Os02t0592300-01
Chr02	irgsp1_rep	five_prime_UTR	22924401	22924462	.	-	.	Parent=Os02t0592300-01
Chr02	irgsp1_rep	CDS	22924174	22924400	.	-	0	Parent=Os02t0592300-01
Chr02	irgsp1_rep	CDS	22923770	22924091	.	-	1	Parent=Os02t0592300-01
Chr02	irgsp1_rep	CDS	22922674	22923578	.	-	0	Parent=Os02t0592300-01
Chr02	irgsp1_rep	mRNA	22917835	22924459	.	-	.	ID=Os02t0592300-02;Name=Os02t0592300-02;Locus_id=Os02g0592300;Oryzabase Gene Symbol Synonym(s)=OsPMS1%2C OsPMS2;Oryzabase Gene Name Synonym(s)=mismatch repair protein OsPMS1;Note=Similar to PMS5 protein (HPMS5 protein) (Fragment).;Transcript_evidence=AK102601 (DDBJ%2C Best hit);ORF_evidence=B8AEQ2 (UniProt);GO=Biological Process: mismatch repair (GO:0006298),Molecular Function: ATP binding (GO:0005524),Molecular Function: mismatched DNA binding (GO:0030983);InterPro=DNA mismatch repair protein (IPR002099),ATPase-like%2C ATP-binding domain (IPR003594),DNA mismatch repair protein%2C C-terminal (IPR013507),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),DNA mismatch repair%2C conserved site (IPR014762),DNA mismatch repair protein%2C N-terminal (IPR014763),MutL%2C C-terminal%2C dimerisation (IPR014790),Post Meiotic Segregation 2 (IPR015434),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=J033098M13;Oryzabase=11523;Expression=AK102601;TENOR=Os02t0592300-02;KEGG=Os02t0592300-02
Chr02	irgsp1_rep	five_prime_UTR	22924401	22924459	.	-	.	Parent=Os02t0592300-02
Chr02	irgsp1_rep	CDS	22924174	22924400	.	-	0	Parent=Os02t0592300-02
Chr02	irgsp1_rep	CDS	22923770	22924091	.	-	1	Parent=Os02t0592300-02
Chr02	irgsp1_rep	CDS	22922352	22923578	.	-	0	Parent=Os02t0592300-02
Chr02	irgsp1_rep	CDS	22921723	22921973	.	-	0	Parent=Os02t0592300-02
Chr02	irgsp1_rep	CDS	22921509	22921635	.	-	1	Parent=Os02t0592300-02
Chr02	irgsp1_rep	CDS	22920848	22920916	.	-	0	Parent=Os02t0592300-02
Chr02	irgsp1_rep	CDS	22920639	22920712	.	-	0	Parent=Os02t0592300-02
Chr02	irgsp1_rep	CDS	22920399	22920464	.	-	1	Parent=Os02t0592300-02
Chr02	irgsp1_rep	CDS	22919596	22919699	.	-	1	Parent=Os02t0592300-02
Chr02	irgsp1_rep	CDS	22919334	22919515	.	-	2	Parent=Os02t0592300-02
Chr02	irgsp1_rep	CDS	22918952	22919051	.	-	0	Parent=Os02t0592300-02
Chr02	irgsp1_rep	CDS	22918448	22918470	.	-	2	Parent=Os02t0592300-02
Chr02	irgsp1_rep	three_prime_UTR	22917835	22918447	.	-	.	Parent=Os02t0592300-02
Chr02	irgsp1_rep	mRNA	22927598	22930325	.	+	.	ID=Os02t0592400-01;Name=Os02t0592400-01;Locus_id=Os02g0592400;Oryzabase Gene Symbol Synonym(s)=OsHIGD4%2C HIGD4;Oryzabase Gene Name Synonym(s)=Hypoxia-Induced Gene Domain 4%2C Hypoxia-Induced Gene Domain Protein 4;Note=Hypoxia induced protein conserved region family protein.;Transcript_evidence=AK121468 (DDBJ%2C Best hit),AK105384 (DDBJ%2C Best hit);ORF_evidence=NP_001148018.1 (RefSeq);InterPro=Hypoxia induced protein%2C domain (IPR007667);NIAS_FLcDNA=J023147K15,001-121-C12;Oryzabase=21342;Expression=AK121468;TENOR=Os02t0592400-01;KEGG=Os02t0592400-01
Chr02	irgsp1_rep	five_prime_UTR	22927598	22927694	.	+	.	Parent=Os02t0592400-01
Chr02	irgsp1_rep	CDS	22927695	22927788	.	+	0	Parent=Os02t0592400-01
Chr02	irgsp1_rep	CDS	22928113	22928203	.	+	2	Parent=Os02t0592400-01
Chr02	irgsp1_rep	CDS	22929944	22930082	.	+	1	Parent=Os02t0592400-01
Chr02	irgsp1_rep	three_prime_UTR	22930083	22930325	.	+	.	Parent=Os02t0592400-01
Chr02	irgsp1_rep	mRNA	22930988	22933528	.	-	.	ID=Os02t0592500-01;Name=Os02t0592500-01;Locus_id=Os02g0592500;Note=Folate receptor%2C conserved region domain containing protein.;Transcript_evidence=AK070526 (DDBJ%2C Best hit);ORF_evidence=B9F0U2 (UniProt);InterPro=Folate receptor-like (IPR018143);NIAS_FLcDNA=J023060F11;Expression=AK070526;TENOR=Os02t0592500-01;KEGG=Os02t0592500-01
Chr02	irgsp1_rep	five_prime_UTR	22933421	22933528	.	-	.	Parent=Os02t0592500-01
Chr02	irgsp1_rep	CDS	22933324	22933420	.	-	0	Parent=Os02t0592500-01
Chr02	irgsp1_rep	CDS	22932363	22932721	.	-	2	Parent=Os02t0592500-01
Chr02	irgsp1_rep	CDS	22931642	22931976	.	-	0	Parent=Os02t0592500-01
Chr02	irgsp1_rep	CDS	22931256	22931358	.	-	1	Parent=Os02t0592500-01
Chr02	irgsp1_rep	three_prime_UTR	22930988	22931255	.	-	.	Parent=Os02t0592500-01
Chr02	irgsp1_rep	mRNA	22934104	22939899	.	+	.	ID=Os02t0592600-01;Name=Os02t0592600-01;Locus_id=Os02g0592600;Note=Phospholipase C%2C phosphatidylinositol-specific%2C Y domain domain containing protein.;Transcript_evidence=AK099683 (DDBJ%2C Best hit);ORF_evidence=A2WUV9 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: signal transduction (GO:0007165),Biological Process: intracellular signal transduction (GO:0035556),Molecular Function: phosphatidylinositol phospholipase C activity (GO:0004435);InterPro=Phospholipase C%2C phosphatidylinositol-specific%2C Y domain (IPR001711),Aminotransferase-like%2C plant mobile domain (IPR019557);NIAS_FLcDNA=J013071I02;TENOR=Os02t0592600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	22934104	22935526	.	+	.	Parent=Os02t0592600-01
Chr02	irgsp1_rep	CDS	22935527	22935820	.	+	0	Parent=Os02t0592600-01
Chr02	irgsp1_rep	CDS	22935924	22937228	.	+	0	Parent=Os02t0592600-01
Chr02	irgsp1_rep	CDS	22937398	22938129	.	+	0	Parent=Os02t0592600-01
Chr02	irgsp1_rep	three_prime_UTR	22938130	22938622	.	+	.	Parent=Os02t0592600-01
Chr02	irgsp1_rep	three_prime_UTR	22939275	22939343	.	+	.	Parent=Os02t0592600-01
Chr02	irgsp1_rep	three_prime_UTR	22939452	22939899	.	+	.	Parent=Os02t0592600-01
Chr02	irgsp1_rep	mRNA	22934811	22938359	.	+	.	ID=Os02t0592600-02;Name=Os02t0592600-02;Locus_id=Os02g0592600;Note=Phospholipase C%2C phosphatidylinositol-specific%2C Y domain domain containing protein.;Transcript_evidence=AK103224 (DDBJ%2C Best hit);ORF_evidence=A2WUV9 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: signal transduction (GO:0007165),Biological Process: intracellular signal transduction (GO:0035556),Molecular Function: phosphatidylinositol phospholipase C activity (GO:0004435);InterPro=Phospholipase C%2C phosphatidylinositol-specific%2C Y domain (IPR001711),Aminotransferase-like%2C plant mobile domain (IPR019557);NIAS_FLcDNA=J033123A06;TENOR=Os02t0592600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	22934811	22935014	.	+	.	Parent=Os02t0592600-02
Chr02	irgsp1_rep	CDS	22935015	22935068	.	+	0	Parent=Os02t0592600-02
Chr02	irgsp1_rep	CDS	22935548	22935820	.	+	0	Parent=Os02t0592600-02
Chr02	irgsp1_rep	CDS	22935924	22937228	.	+	0	Parent=Os02t0592600-02
Chr02	irgsp1_rep	CDS	22937398	22938129	.	+	0	Parent=Os02t0592600-02
Chr02	irgsp1_rep	three_prime_UTR	22938130	22938359	.	+	.	Parent=Os02t0592600-02
Chr02	irgsp1_rep	mRNA	22941281	22942945	.	+	.	ID=Os02t0592700-01;Name=Os02t0592700-01;Locus_id=Os02g0592700;Note=Conserved hypothetical protein.;Transcript_evidence=AK107229 (DDBJ%2C Best hit);ORF_evidence=A2X6P0 (UniProt);NIAS_FLcDNA=002-125-E02;Expression=AK107229;TENOR=Os02t0592700-01;KEGG=Os02t0592700-01
Chr02	irgsp1_rep	five_prime_UTR	22941281	22941539	.	+	.	Parent=Os02t0592700-01
Chr02	irgsp1_rep	CDS	22941540	22942166	.	+	0	Parent=Os02t0592700-01
Chr02	irgsp1_rep	three_prime_UTR	22942167	22942945	.	+	.	Parent=Os02t0592700-01
Chr02	irgsp1_rep	mRNA	22941314	22942234	.	+	.	ID=Os02t0592700-02;Name=Os02t0592700-02;Locus_id=Os02g0592700;Note=Conserved hypothetical protein.;Transcript_evidence=AK108162 (DDBJ%2C Best hit);ORF_evidence=A2X6P0 (UniProt);NIAS_FLcDNA=002-139-H01;Expression=AK108162;TENOR=Os02t0592700-02;KEGG=Os02t0592700-02
Chr02	irgsp1_rep	five_prime_UTR	22941314	22941539	.	+	.	Parent=Os02t0592700-02
Chr02	irgsp1_rep	CDS	22941540	22942166	.	+	0	Parent=Os02t0592700-02
Chr02	irgsp1_rep	three_prime_UTR	22942167	22942234	.	+	.	Parent=Os02t0592700-02
Chr02	irgsp1_rep	mRNA	22942644	22943817	.	-	.	ID=Os02t0592833-00;Name=Os02t0592833-00;Locus_id=Os02g0592833;Note=Protein of unknown function DUF581 family protein.;Transcript_evidence=CT841776 (DDBJ%2C Best hit);ORF_evidence=NP_001047297.1 (RefSeq);InterPro=Protein of unknown function DUF581 (IPR007650);TENOR=Os02t0592833-00
Chr02	irgsp1_rep	five_prime_UTR	22943682	22943817	.	-	.	Parent=Os02t0592833-00
Chr02	irgsp1_rep	CDS	22943461	22943681	.	-	0	Parent=Os02t0592833-00
Chr02	irgsp1_rep	CDS	22943064	22943223	.	-	1	Parent=Os02t0592833-00
Chr02	irgsp1_rep	three_prime_UTR	22942644	22943063	.	-	.	Parent=Os02t0592833-00
Chr02	irgsp1_rep	mRNA	22955193	22966075	.	-	.	ID=Os02t0593100-00;Name=Os02t0593100-00;Locus_id=Os02g0593100;CGSNL Gene Symbol=DAO5;CGSNL Gene Name=DIAMINE OXIDASE 5;Oryzabase Gene Symbol Synonym(s)=OsDAO5%2C OsCuDAO5%2C CuDAO5;Oryzabase Gene Name Synonym(s)=diamine oxidase 5%2C Copper-containing diamine oxidase 5;Note=Similar to OSIGBa0106G07.12 protein.;Transcript_evidence=AK333669 (DDBJ);ORF_evidence=Q01IY5 (UniProt);GO=Biological Process: amine metabolic process (GO:0009308),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: copper ion binding (GO:0005507),Molecular Function: primary amine oxidase activity (GO:0008131),Molecular Function: quinone binding (GO:0048038);InterPro=Copper amine oxidase (IPR000269),Copper amine oxidase%2C C-terminal (IPR015798),Copper amine oxidase%2C N2/N3-terminal (IPR015801),Copper amine oxidase%2C N3-terminal (IPR015802),Copper amine oxidase%2C N-terminal (IPR016182);Oryzabase=21675;TENOR=Os02t0593100-00;KEGG=Os02t0593100-00 (EC:1.4.3.21)
Chr02	irgsp1_rep	five_prime_UTR	22966047	22966075	.	-	.	Parent=Os02t0593100-00
Chr02	irgsp1_rep	CDS	22965932	22966046	.	-	0	Parent=Os02t0593100-00
Chr02	irgsp1_rep	CDS	22965145	22965254	.	-	2	Parent=Os02t0593100-00
Chr02	irgsp1_rep	CDS	22964017	22964129	.	-	0	Parent=Os02t0593100-00
Chr02	irgsp1_rep	CDS	22963336	22963666	.	-	1	Parent=Os02t0593100-00
Chr02	irgsp1_rep	CDS	22963017	22963232	.	-	0	Parent=Os02t0593100-00
Chr02	irgsp1_rep	CDS	22956670	22956906	.	-	0	Parent=Os02t0593100-00
Chr02	irgsp1_rep	CDS	22956390	22956575	.	-	0	Parent=Os02t0593100-00
Chr02	irgsp1_rep	CDS	22955994	22956086	.	-	0	Parent=Os02t0593100-00
Chr02	irgsp1_rep	three_prime_UTR	22955945	22955993	.	-	.	Parent=Os02t0593100-00
Chr02	irgsp1_rep	three_prime_UTR	22955590	22955858	.	-	.	Parent=Os02t0593100-00
Chr02	irgsp1_rep	three_prime_UTR	22955402	22955483	.	-	.	Parent=Os02t0593100-00
Chr02	irgsp1_rep	three_prime_UTR	22955193	22955239	.	-	.	Parent=Os02t0593100-00
Chr02	irgsp1_rep	mRNA	22969552	22976636	.	-	.	ID=Os02t0593400-01;Name=Os02t0593400-01;Locus_id=Os02g0593400;Note=Conserved hypothetical protein.;Transcript_evidence=AK072362 (DDBJ%2C Best hit);ORF_evidence=XP_002454106.1 (RefSeq);NIAS_FLcDNA=J023063B12;Expression=AK072362;TENOR=Os02t0593400-01;KEGG=Os02t0593400-01
Chr02	irgsp1_rep	five_prime_UTR	22976520	22976636	.	-	.	Parent=Os02t0593400-01
Chr02	irgsp1_rep	CDS	22976382	22976519	.	-	0	Parent=Os02t0593400-01
Chr02	irgsp1_rep	CDS	22976110	22976262	.	-	0	Parent=Os02t0593400-01
Chr02	irgsp1_rep	three_prime_UTR	22976079	22976109	.	-	.	Parent=Os02t0593400-01
Chr02	irgsp1_rep	three_prime_UTR	22971316	22972825	.	-	.	Parent=Os02t0593400-01
Chr02	irgsp1_rep	three_prime_UTR	22969552	22971196	.	-	.	Parent=Os02t0593400-01
Chr02	irgsp1_rep	mRNA	22975886	22976633	.	-	.	ID=Os02t0593400-02;Name=Os02t0593400-02;Locus_id=Os02g0593400;Note=Conserved hypothetical protein.;Transcript_evidence=AK064226 (DDBJ%2C Best hit);ORF_evidence=XP_002454106.1 (RefSeq);NIAS_FLcDNA=002-104-G07;Expression=AK064226;TENOR=Os02t0593400-02;KEGG=Os02t0593400-02
Chr02	irgsp1_rep	five_prime_UTR	22976520	22976633	.	-	.	Parent=Os02t0593400-02
Chr02	irgsp1_rep	CDS	22976382	22976519	.	-	0	Parent=Os02t0593400-02
Chr02	irgsp1_rep	CDS	22976110	22976262	.	-	0	Parent=Os02t0593400-02
Chr02	irgsp1_rep	three_prime_UTR	22975886	22976109	.	-	.	Parent=Os02t0593400-02
Chr02	irgsp1_rep	mRNA	22975504	22976578	.	-	.	ID=Os02t0593400-03;Name=Os02t0593400-03;Locus_id=Os02g0593400;Note=Conserved hypothetical protein.;Transcript_evidence=AK109015 (DDBJ%2C Best hit);ORF_evidence=XP_002454106.1 (RefSeq);NIAS_FLcDNA=002-154-A06;Expression=AK109015;TENOR=Os02t0593400-03;KEGG=Os02t0593400-03
Chr02	irgsp1_rep	five_prime_UTR	22976520	22976578	.	-	.	Parent=Os02t0593400-03
Chr02	irgsp1_rep	CDS	22976382	22976519	.	-	0	Parent=Os02t0593400-03
Chr02	irgsp1_rep	CDS	22976110	22976262	.	-	0	Parent=Os02t0593400-03
Chr02	irgsp1_rep	three_prime_UTR	22975504	22976109	.	-	.	Parent=Os02t0593400-03
Chr02	irgsp1_rep	mRNA	22971895	22975176	.	+	.	ID=Os02t0593500-01;Name=Os02t0593500-01;Locus_id=Os02g0593500;RAP-DB Gene Symbol Synonym(s)=OsPHT2%3B1;RAP-DB Gene Name Synonym(s)=phosphate transporter 2%3B1;CGSNL Gene Symbol=PT14;CGSNL Gene Name=PHOSPHATE TRANSPORTER 14;Oryzabase Gene Symbol Synonym(s)=OsPT14;Oryzabase Gene Name Synonym(s)=phosphate transporter 14;Note=Low-affinity Pi transporter%2C UV-B tolerance%2C Pi homeostasis%2C Flavonoids homeostasis;Transcript_evidence=AK067498;ORF_evidence=Q6ZH86;GO=Biological Process: phosphate ion transport (GO:0006817),Molecular Function: inorganic phosphate transmembrane transporter activity (GO:0005315),Cellular Component: membrane (GO:0016020);InterPro=Phosphate transporter (IPR001204);NIAS_FLcDNA=J013111N12;Manual Curation=June 17%2C 2020;Literature_PMID=31733118;Oryzabase=21398;Expression=AK067498;TENOR=Os02t0593500-01;KEGG=Os02t0593500-01;Subcellular location=chloroplast envelope (GO:0009941)
Chr02	irgsp1_rep	five_prime_UTR	22971895	22972000	.	+	.	Parent=Os02t0593500-01
Chr02	irgsp1_rep	CDS	22972001	22972708	.	+	0	Parent=Os02t0593500-01
Chr02	irgsp1_rep	CDS	22973668	22973859	.	+	0	Parent=Os02t0593500-01
Chr02	irgsp1_rep	CDS	22974026	22974844	.	+	0	Parent=Os02t0593500-01
Chr02	irgsp1_rep	three_prime_UTR	22974845	22975176	.	+	.	Parent=Os02t0593500-01
Chr02	irgsp1_rep	mRNA	22971939	22975181	.	+	.	ID=Os02t0593500-02;Name=Os02t0593500-02;Locus_id=Os02g0593500;CGSNL Gene Symbol=PT14;CGSNL Gene Name=PHOSPHATE TRANSPORTER 14;Oryzabase Gene Symbol Synonym(s)=OsPT14%2C OsPHT2%3B1%2C PHT2%3B1;Oryzabase Gene Name Synonym(s)=phosphate transporter 14%2C phosphate transporter 2%3B1;Note=Similar to Phosphate transporter 2-1.;Transcript_evidence=AK104702 (DDBJ%2C Best hit);ORF_evidence=Q7YME0 (UniProt);GO=Biological Process: phosphate ion transport (GO:0006817),Cellular Component: membrane (GO:0016020),Molecular Function: inorganic phosphate transmembrane transporter activity (GO:0005315);InterPro=Phosphate transporter (IPR001204);NIAS_FLcDNA=001-037-C11;Oryzabase=21398;Expression=AK104702;TENOR=Os02t0593500-02;KEGG=Os02t0593500-02
Chr02	irgsp1_rep	five_prime_UTR	22971939	22972000	.	+	.	Parent=Os02t0593500-02
Chr02	irgsp1_rep	CDS	22972001	22972708	.	+	0	Parent=Os02t0593500-02
Chr02	irgsp1_rep	CDS	22973668	22973859	.	+	0	Parent=Os02t0593500-02
Chr02	irgsp1_rep	CDS	22974215	22974844	.	+	0	Parent=Os02t0593500-02
Chr02	irgsp1_rep	three_prime_UTR	22974845	22975181	.	+	.	Parent=Os02t0593500-02
Chr02	irgsp1_rep	mRNA	22976020	22976575	.	+	.	ID=Os02t0593550-00;Name=Os02t0593550-00;Locus_id=Os02g0593550;Note=Hypothetical gene.;Transcript_evidence=EU972267 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0593550-00;KEGG=Os02t0593550-00
Chr02	irgsp1_rep	five_prime_UTR	22976020	22976029	.	+	.	Parent=Os02t0593550-00
Chr02	irgsp1_rep	CDS	22976030	22976344	.	+	0	Parent=Os02t0593550-00
Chr02	irgsp1_rep	three_prime_UTR	22976345	22976575	.	+	.	Parent=Os02t0593550-00
Chr02	irgsp1_rep	mRNA	22978830	22981452	.	+	.	ID=Os02t0593600-01;Name=Os02t0593600-01;Locus_id=Os02g0593600;Oryzabase Gene Symbol Synonym(s)=OsIRL2;Oryzabase Gene Name Synonym(s)=intracellular Ras-group-related LRR protein 2;Note=Leucine-rich repeat%2C typical subtype containing protein.;Transcript_evidence=AK069976 (DDBJ%2C Best hit);ORF_evidence=Q01IY1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591);NIAS_FLcDNA=J023035N02;Oryzabase=14433;Expression=AK069976;TENOR=Os02t0593600-01;KEGG=Os02t0593600-01
Chr02	irgsp1_rep	five_prime_UTR	22978830	22978959	.	+	.	Parent=Os02t0593600-01
Chr02	irgsp1_rep	CDS	22978960	22979640	.	+	0	Parent=Os02t0593600-01
Chr02	irgsp1_rep	CDS	22980272	22980438	.	+	0	Parent=Os02t0593600-01
Chr02	irgsp1_rep	CDS	22980572	22981229	.	+	1	Parent=Os02t0593600-01
Chr02	irgsp1_rep	three_prime_UTR	22981230	22981452	.	+	.	Parent=Os02t0593600-01
Chr02	irgsp1_rep	mRNA	22981864	22987590	.	-	.	ID=Os02t0593700-01;Name=Os02t0593700-01;Locus_id=Os02g0593700;Oryzabase Gene Name Synonym(s)=Pbi and ZZ domain DBP protein;Note=Similar to TA4 protein (Fragment).;Transcript_evidence=AK072838 (DDBJ%2C Best hit);ORF_evidence=B8K1X5 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Phox/Bem1p (IPR000270),Zinc finger%2C ZZ-type (IPR000433),UBA-like (IPR009060),Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (IPR015940);NIAS_FLcDNA=J023141P19;Oryzabase=15986;TENOR=Os02t0593700-01
Chr02	irgsp1_rep	five_prime_UTR	22987300	22987590	.	-	.	Parent=Os02t0593700-01
Chr02	irgsp1_rep	CDS	22987228	22987299	.	-	0	Parent=Os02t0593700-01
Chr02	irgsp1_rep	CDS	22983999	22985266	.	-	0	Parent=Os02t0593700-01
Chr02	irgsp1_rep	CDS	22983795	22983909	.	-	1	Parent=Os02t0593700-01
Chr02	irgsp1_rep	CDS	22983395	22983622	.	-	0	Parent=Os02t0593700-01
Chr02	irgsp1_rep	CDS	22983086	22983235	.	-	0	Parent=Os02t0593700-01
Chr02	irgsp1_rep	CDS	22982390	22982989	.	-	0	Parent=Os02t0593700-01
Chr02	irgsp1_rep	CDS	22982186	22982290	.	-	0	Parent=Os02t0593700-01
Chr02	irgsp1_rep	three_prime_UTR	22981864	22982185	.	-	.	Parent=Os02t0593700-01
Chr02	irgsp1_rep	mRNA	22981864	22984486	.	-	.	ID=Os02t0593700-02;Name=Os02t0593700-02;Locus_id=Os02g0593700;Oryzabase Gene Name Synonym(s)=Pbi and ZZ domain DBP protein;Note=Similar to Ubiquitin-associated protein.;Transcript_evidence=AK071429 (DDBJ%2C Best hit);ORF_evidence=B8K1X5 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C ZZ-type (IPR000433),UBA-like (IPR009060),Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (IPR015940);NIAS_FLcDNA=J023095L03;Oryzabase=15986;Expression=AK071429;TENOR=Os02t0593700-02;KEGG=Os02t0593700-02
Chr02	irgsp1_rep	CDS	22983999	22984486	.	-	0	Parent=Os02t0593700-02
Chr02	irgsp1_rep	CDS	22983795	22983909	.	-	1	Parent=Os02t0593700-02
Chr02	irgsp1_rep	CDS	22983395	22983622	.	-	0	Parent=Os02t0593700-02
Chr02	irgsp1_rep	CDS	22983086	22983235	.	-	0	Parent=Os02t0593700-02
Chr02	irgsp1_rep	CDS	22982390	22982989	.	-	0	Parent=Os02t0593700-02
Chr02	irgsp1_rep	CDS	22982186	22982290	.	-	0	Parent=Os02t0593700-02
Chr02	irgsp1_rep	three_prime_UTR	22981864	22982185	.	-	.	Parent=Os02t0593700-02
Chr02	irgsp1_rep	mRNA	22981859	22984088	.	-	.	ID=Os02t0593700-03;Name=Os02t0593700-03;Locus_id=Os02g0593700;Oryzabase Gene Name Synonym(s)=Pbi and ZZ domain DBP protein;Note=Similar to Ubiquitin-associated protein.;Transcript_evidence=AK060817 (DDBJ%2C Best hit);ORF_evidence=B8K1X5 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C ZZ-type (IPR000433);NIAS_FLcDNA=001-034-A04;Oryzabase=15986;Expression=AK060817;TENOR=Os02t0593700-03;KEGG=Os02t0593700-03
Chr02	irgsp1_rep	five_prime_UTR	22984088	22984088	.	-	.	Parent=Os02t0593700-03
Chr02	irgsp1_rep	CDS	22983999	22984087	.	-	0	Parent=Os02t0593700-03
Chr02	irgsp1_rep	CDS	22983795	22983909	.	-	1	Parent=Os02t0593700-03
Chr02	irgsp1_rep	CDS	22983391	22983622	.	-	0	Parent=Os02t0593700-03
Chr02	irgsp1_rep	CDS	22983210	22983235	.	-	2	Parent=Os02t0593700-03
Chr02	irgsp1_rep	three_prime_UTR	22983086	22983209	.	-	.	Parent=Os02t0593700-03
Chr02	irgsp1_rep	three_prime_UTR	22982390	22982989	.	-	.	Parent=Os02t0593700-03
Chr02	irgsp1_rep	three_prime_UTR	22981859	22982290	.	-	.	Parent=Os02t0593700-03
Chr02	irgsp1_rep	mRNA	22981864	22987550	.	-	.	ID=Os02t0593700-04;Name=Os02t0593700-04;Locus_id=Os02g0593700;Oryzabase Gene Name Synonym(s)=Pbi and ZZ domain DBP protein;Note=Similar to TA4 protein (Fragment).;Transcript_evidence=AK099686 (DDBJ%2C Best hit);ORF_evidence=B8K1X5 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Phox/Bem1p (IPR000270),Zinc finger%2C ZZ-type (IPR000433),UBA-like (IPR009060),Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (IPR015940);NIAS_FLcDNA=J013072E12;Oryzabase=15986;TENOR=Os02t0593700-04
Chr02	irgsp1_rep	five_prime_UTR	22987300	22987550	.	-	.	Parent=Os02t0593700-04
Chr02	irgsp1_rep	CDS	22987228	22987299	.	-	0	Parent=Os02t0593700-04
Chr02	irgsp1_rep	CDS	22983999	22985266	.	-	0	Parent=Os02t0593700-04
Chr02	irgsp1_rep	CDS	22983795	22983909	.	-	1	Parent=Os02t0593700-04
Chr02	irgsp1_rep	CDS	22983395	22983622	.	-	0	Parent=Os02t0593700-04
Chr02	irgsp1_rep	CDS	22983086	22983235	.	-	0	Parent=Os02t0593700-04
Chr02	irgsp1_rep	CDS	22982390	22982989	.	-	0	Parent=Os02t0593700-04
Chr02	irgsp1_rep	CDS	22982186	22982290	.	-	0	Parent=Os02t0593700-04
Chr02	irgsp1_rep	three_prime_UTR	22981864	22982185	.	-	.	Parent=Os02t0593700-04
Chr02	irgsp1_rep	mRNA	22990685	22995388	.	+	.	ID=Os02t0593900-01;Name=Os02t0593900-01;Locus_id=Os02g0593900;Note=Methyltransferase-related domain containing protein.;Transcript_evidence=AK288086 (DDBJ%2C Best hit);ORF_evidence=B6TN81 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Methyltransferase-related (IPR007823);NIAS_FLcDNA=J075177J05;TENOR=Os02t0593900-01;KEGG=Os02t0593900-01
Chr02	irgsp1_rep	five_prime_UTR	22990685	22990705	.	+	.	Parent=Os02t0593900-01
Chr02	irgsp1_rep	CDS	22990706	22990924	.	+	0	Parent=Os02t0593900-01
Chr02	irgsp1_rep	CDS	22991480	22991541	.	+	0	Parent=Os02t0593900-01
Chr02	irgsp1_rep	CDS	22992006	22992057	.	+	1	Parent=Os02t0593900-01
Chr02	irgsp1_rep	CDS	22992410	22992524	.	+	0	Parent=Os02t0593900-01
Chr02	irgsp1_rep	CDS	22992631	22992725	.	+	2	Parent=Os02t0593900-01
Chr02	irgsp1_rep	CDS	22993459	22993565	.	+	0	Parent=Os02t0593900-01
Chr02	irgsp1_rep	CDS	22993649	22993763	.	+	1	Parent=Os02t0593900-01
Chr02	irgsp1_rep	CDS	22994766	22994810	.	+	0	Parent=Os02t0593900-01
Chr02	irgsp1_rep	CDS	22994931	22994999	.	+	0	Parent=Os02t0593900-01
Chr02	irgsp1_rep	three_prime_UTR	22995000	22995388	.	+	.	Parent=Os02t0593900-01
Chr02	irgsp1_rep	mRNA	23000073	23005321	.	+	.	ID=Os02t0594100-01;Name=Os02t0594100-01;Locus_id=Os02g0594100;Note=Similar to Protein kinase ATN1.;Transcript_evidence=AK067412 (DDBJ%2C Best hit);ORF_evidence=Q7XJ65 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase%2C ATN1-like (IPR015784),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013099K14;Expression=AK067412;TENOR=Os02t0594100-01;KEGG=Os02t0594100-01
Chr02	irgsp1_rep	five_prime_UTR	23000073	23000370	.	+	.	Parent=Os02t0594100-01
Chr02	irgsp1_rep	five_prime_UTR	23001690	23001745	.	+	.	Parent=Os02t0594100-01
Chr02	irgsp1_rep	CDS	23001746	23001876	.	+	0	Parent=Os02t0594100-01
Chr02	irgsp1_rep	CDS	23001973	23002105	.	+	1	Parent=Os02t0594100-01
Chr02	irgsp1_rep	CDS	23002201	23002396	.	+	0	Parent=Os02t0594100-01
Chr02	irgsp1_rep	CDS	23003983	23004107	.	+	2	Parent=Os02t0594100-01
Chr02	irgsp1_rep	CDS	23004186	23004344	.	+	0	Parent=Os02t0594100-01
Chr02	irgsp1_rep	CDS	23004656	23004970	.	+	0	Parent=Os02t0594100-01
Chr02	irgsp1_rep	three_prime_UTR	23004971	23005321	.	+	.	Parent=Os02t0594100-01
Chr02	irgsp1_rep	mRNA	23008659	23011091	.	-	.	ID=Os02t0594166-01;Name=Os02t0594166-01;Locus_id=Os02g0594166;Note=Conserved hypothetical protein.;Transcript_evidence=AK240972 (DDBJ%2C Best hit);ORF_evidence=NP_001173055.1 (RefSeq);NIAS_FLcDNA=J065047G11;TENOR=Os02t0594166-01;KEGG=Os02t0594166-01
Chr02	irgsp1_rep	five_prime_UTR	23010959	23011091	.	-	.	Parent=Os02t0594166-01
Chr02	irgsp1_rep	five_prime_UTR	23009489	23010185	.	-	.	Parent=Os02t0594166-01
Chr02	irgsp1_rep	CDS	23009339	23009488	.	-	0	Parent=Os02t0594166-01
Chr02	irgsp1_rep	three_prime_UTR	23008659	23009338	.	-	.	Parent=Os02t0594166-01
Chr02	irgsp1_rep	mRNA	23008681	23011151	.	+	.	ID=Os02t0594232-00;Name=Os02t0594232-00;Locus_id=Os02g0594232;Note=Hypothetical conserved gene.;Transcript_evidence=AK241110 (DDBJ%2C Secondary hit);ORF_evidence=Q6K2X8 (UniProt);TENOR=Os02t0594232-00;KEGG=Os02t0594232-00
Chr02	irgsp1_rep	five_prime_UTR	23008681	23010141	.	+	.	Parent=Os02t0594232-00
Chr02	irgsp1_rep	CDS	23010142	23010185	.	+	0	Parent=Os02t0594232-00
Chr02	irgsp1_rep	CDS	23010959	23011151	.	+	1	Parent=Os02t0594232-00
Chr02	irgsp1_rep	mRNA	23024797	23025834	.	+	.	ID=Os02t0594300-00;Name=Os02t0594300-00;Locus_id=Os02g0594300;CGSNL Gene Symbol=ERF79;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 79;Oryzabase Gene Symbol Synonym(s)=OsERF#079%2C OsERF079%2C OsERF79%2C AP2/EREBP#017%2C AP2/EREBP17;Oryzabase Gene Name Synonym(s)=ethylene response factor 79%2C APETALA2/ethylene-responsive element binding protein 17;Note=Similar to Enhancer of shoot regeneration ESR1.;Transcript_evidence=EU946638 (DDBJ);ORF_evidence=NP_001147345.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);Oryzabase=10586;TENOR=Os02t0594300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	23024797	23025834	.	+	0	Parent=Os02t0594300-00
Chr02	irgsp1_rep	mRNA	23045157	23047102	.	-	.	ID=Os02t0594651-00;Name=Os02t0594651-00;Locus_id=Os02g0594651;Note=Hypothetical gene.;Transcript_evidence=BT060652 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0594651-00;KEGG=Os02t0594651-00
Chr02	irgsp1_rep	five_prime_UTR	23046350	23047102	.	-	.	Parent=Os02t0594651-00
Chr02	irgsp1_rep	CDS	23045297	23046349	.	-	0	Parent=Os02t0594651-00
Chr02	irgsp1_rep	three_prime_UTR	23045157	23045296	.	-	.	Parent=Os02t0594651-00
Chr02	irgsp1_rep	mRNA	23046483	23047393	.	+	.	ID=Os02t0594700-01;Name=Os02t0594700-01;Locus_id=Os02g0594700;Note=Similar to Non-phototropic hypocotyl 3.;Transcript_evidence=AK111339 (DDBJ%2C Best hit);ORF_evidence=B6SW12 (UniProt);GO=Biological Process: response to light stimulus (GO:0009416),Molecular Function: signal transducer activity (GO:0004871);InterPro=NPH3 (IPR004249);NIAS_FLcDNA=002-181-F06;Expression=AK111339;TENOR=Os02t0594700-01;KEGG=Os02t0594700-01
Chr02	irgsp1_rep	five_prime_UTR	23046483	23046549	.	+	.	Parent=Os02t0594700-01
Chr02	irgsp1_rep	CDS	23046550	23047122	.	+	0	Parent=Os02t0594700-01
Chr02	irgsp1_rep	three_prime_UTR	23047123	23047393	.	+	.	Parent=Os02t0594700-01
Chr02	irgsp1_rep	mRNA	23061623	23062459	.	+	.	ID=Os02t0594750-00;Name=Os02t0594750-00;Locus_id=Os02g0594750;Note=Hypothetical gene.;Transcript_evidence=CT841798 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os02t0594750-00;KEGG=Os02t0594750-00
Chr02	irgsp1_rep	five_prime_UTR	23061623	23062142	.	+	.	Parent=Os02t0594750-00
Chr02	irgsp1_rep	CDS	23062143	23062391	.	+	0	Parent=Os02t0594750-00
Chr02	irgsp1_rep	three_prime_UTR	23062392	23062459	.	+	.	Parent=Os02t0594750-00
Chr02	irgsp1_rep	mRNA	23062855	23066544	.	-	.	ID=Os02t0594800-01;Name=Os02t0594800-01;Locus_id=Os02g0594800;CGSNL Gene Symbol=NAC50;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 50;Oryzabase Gene Symbol Synonym(s)=ONAC050%2C ONAC50;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 050%2C NAC domain-containing protein 50;Note=No apical meristem (NAM) protein domain containing protein.;Transcript_evidence=AK121953 (DDBJ%2C Best hit);ORF_evidence=NP_001149204.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=J033107L05;Oryzabase=15836;Expression=AK121953;TENOR=Os02t0594800-01;KEGG=Os02t0594800-01
Chr02	irgsp1_rep	five_prime_UTR	23066204	23066544	.	-	.	Parent=Os02t0594800-01
Chr02	irgsp1_rep	CDS	23066196	23066203	.	-	0	Parent=Os02t0594800-01
Chr02	irgsp1_rep	CDS	23065157	23065295	.	-	1	Parent=Os02t0594800-01
Chr02	irgsp1_rep	CDS	23064560	23064746	.	-	0	Parent=Os02t0594800-01
Chr02	irgsp1_rep	CDS	23063973	23064466	.	-	2	Parent=Os02t0594800-01
Chr02	irgsp1_rep	CDS	23063313	23063612	.	-	0	Parent=Os02t0594800-01
Chr02	irgsp1_rep	CDS	23063177	23063230	.	-	0	Parent=Os02t0594800-01
Chr02	irgsp1_rep	three_prime_UTR	23062855	23063176	.	-	.	Parent=Os02t0594800-01
Chr02	irgsp1_rep	mRNA	23069835	23072526	.	-	.	ID=Os02t0594900-01;Name=Os02t0594900-01;Locus_id=Os02g0594900;Note=Glycosyl transferase%2C family 17 protein.;Transcript_evidence=AK060490 (DDBJ%2C Best hit);ORF_evidence=B6SIB2 (UniProt);GO=Biological Process: protein N-linked glycosylation (GO:0006487),Cellular Component: membrane (GO:0016020),Molecular Function: beta-1%2C4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity (GO:0003830);InterPro=Glycosyl transferase%2C family 17 (IPR006813);NIAS_FLcDNA=001-015-H10;Expression=AK060490;TENOR=Os02t0594900-01;KEGG=Os02t0594900-01
Chr02	irgsp1_rep	five_prime_UTR	23072243	23072526	.	-	.	Parent=Os02t0594900-01
Chr02	irgsp1_rep	CDS	23072168	23072242	.	-	0	Parent=Os02t0594900-01
Chr02	irgsp1_rep	CDS	23070114	23071214	.	-	0	Parent=Os02t0594900-01
Chr02	irgsp1_rep	three_prime_UTR	23069835	23070113	.	-	.	Parent=Os02t0594900-01
Chr02	irgsp1_rep	mRNA	23083106	23086437	.	-	.	ID=Os02t0595100-01;Name=Os02t0595100-01;Locus_id=Os02g0595100;Note=Similar to N-acetylglucosaminyltransferase III.;Transcript_evidence=AK065136 (DDBJ%2C Best hit);ORF_evidence=B6SIB2 (UniProt);GO=Biological Process: protein N-linked glycosylation (GO:0006487),Cellular Component: membrane (GO:0016020),Molecular Function: beta-1%2C4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity (GO:0003830);InterPro=Glycosyl transferase%2C family 17 (IPR006813);NIAS_FLcDNA=J013002A04;TENOR=Os02t0595100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	23084760	23086437	.	-	.	Parent=Os02t0595100-01
Chr02	irgsp1_rep	CDS	23083647	23084759	.	-	0	Parent=Os02t0595100-01
Chr02	irgsp1_rep	three_prime_UTR	23083106	23083646	.	-	.	Parent=Os02t0595100-01
Chr02	irgsp1_rep	mRNA	23083251	23085477	.	-	.	ID=Os02t0595100-02;Name=Os02t0595100-02;Locus_id=Os02g0595100;Note=Similar to N-acetylglucosaminyltransferase III.;Transcript_evidence=AK070690 (DDBJ%2C Best hit);ORF_evidence=B6SIB2 (UniProt);GO=Biological Process: protein N-linked glycosylation (GO:0006487),Cellular Component: membrane (GO:0016020),Molecular Function: beta-1%2C4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity (GO:0003830);InterPro=Glycosyl transferase%2C family 17 (IPR006813);NIAS_FLcDNA=J023058I02;TENOR=Os02t0595100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	23084760	23085477	.	-	.	Parent=Os02t0595100-02
Chr02	irgsp1_rep	CDS	23083647	23084759	.	-	0	Parent=Os02t0595100-02
Chr02	irgsp1_rep	three_prime_UTR	23083251	23083646	.	-	.	Parent=Os02t0595100-02
Chr02	irgsp1_rep	mRNA	23097995	23098588	.	+	.	ID=Os02t0595200-00;Name=Os02t0595200-00;Locus_id=Os02g0595200;Note=Conserved hypothetical protein.;Transcript_evidence=AK357312 (DDBJ);ORF_evidence=NP_001047311.1 (RefSeq);TENOR=Os02t0595200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	23097995	23098045	.	+	.	Parent=Os02t0595200-00
Chr02	irgsp1_rep	CDS	23098046	23098573	.	+	0	Parent=Os02t0595200-00
Chr02	irgsp1_rep	three_prime_UTR	23098574	23098588	.	+	.	Parent=Os02t0595200-00
Chr02	irgsp1_rep	mRNA	23101849	23102815	.	-	.	ID=Os02t0595300-00;Name=Os02t0595300-00;Locus_id=Os02g0595300;Note=Conserved hypothetical protein.;Transcript_evidence=AK369700 (DDBJ);ORF_evidence=Q6ZI57 (UniProt);TENOR=Os02t0595300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	23102745	23102815	.	-	.	Parent=Os02t0595300-00
Chr02	irgsp1_rep	CDS	23102367	23102744	.	-	0	Parent=Os02t0595300-00
Chr02	irgsp1_rep	CDS	23101849	23102091	.	-	0	Parent=Os02t0595300-00
Chr02	irgsp1_rep	mRNA	23105718	23106537	.	-	.	ID=Os02t0595400-01;Name=Os02t0595400-01;Locus_id=Os02g0595400;Note=Conserved hypothetical protein.;Transcript_evidence=AK069935 (DDBJ%2C Best hit),AK099175 (DDBJ%2C Best hit),AK103993 (DDBJ%2C Best hit);ORF_evidence=A2X6Q8 (UniProt);NIAS_FLcDNA=J023039O17,J023093F23,001-018-D10;Expression=AK069935;TENOR=Os02t0595400-01;KEGG=Os02t0595400-01
Chr02	irgsp1_rep	five_prime_UTR	23106476	23106537	.	-	.	Parent=Os02t0595400-01
Chr02	irgsp1_rep	CDS	23105867	23106475	.	-	0	Parent=Os02t0595400-01
Chr02	irgsp1_rep	three_prime_UTR	23105718	23105866	.	-	.	Parent=Os02t0595400-01
Chr02	irgsp1_rep	mRNA	23107011	23110311	.	-	.	ID=Os02t0595500-01;Name=Os02t0595500-01;Locus_id=Os02g0595500;CGSNL Gene Symbol=IDHC;CGSNL Gene Name=ISOCITRATE DEHYDROGENASE SUBUNIT C;Oryzabase Gene Symbol Synonym(s)=OsIDHc%3B2%2C IDHc%3B2;Oryzabase Gene Name Synonym(s)=NAD-dependent isocitrate dehydrogenase c%3B2;Note=Similar to NAD-dependent isocitrate dehydrogenase precursor (EC 1.1.1.41).;Transcript_evidence=AK073096 (DDBJ%2C Best hit);ORF_evidence=Q33E21 (UniProt);GO=Biological Process: tricarboxylic acid cycle (GO:0006099),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: isocitrate dehydrogenase (NAD+) activity (GO:0004449),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: NAD binding (GO:0051287);InterPro=Isocitrate/isopropylmalate dehydrogenase (IPR001804),Isocitrate dehydrogenase NAD-dependent (IPR004434),Isopropylmalate dehydrogenase-like domain (IPR024084);NIAS_FLcDNA=J033005G21;Oryzabase=14087;Expression=AK073096;TENOR=Os02t0595500-01;KEGG=Os02t0595500-01 (EC:1.1.1.41)
Chr02	irgsp1_rep	five_prime_UTR	23110282	23110311	.	-	.	Parent=Os02t0595500-01
Chr02	irgsp1_rep	CDS	23109739	23110281	.	-	0	Parent=Os02t0595500-01
Chr02	irgsp1_rep	CDS	23108306	23108545	.	-	0	Parent=Os02t0595500-01
Chr02	irgsp1_rep	CDS	23107885	23107963	.	-	0	Parent=Os02t0595500-01
Chr02	irgsp1_rep	CDS	23107319	23107593	.	-	2	Parent=Os02t0595500-01
Chr02	irgsp1_rep	three_prime_UTR	23107011	23107318	.	-	.	Parent=Os02t0595500-01
Chr02	irgsp1_rep	mRNA	23111937	23113830	.	+	.	ID=Os02t0595700-01;Name=Os02t0595700-01;Locus_id=Os02g0595700;CGSNL Gene Symbol=EFTU;CGSNL Gene Name=ELONGATION FACTOR TU;Oryzabase Gene Symbol Synonym(s)=tufA%2C EF-Tu;Oryzabase Gene Name Synonym(s)=chloroplast elongation factor EF-Tu%2C elongation factor Tu;Note=Chloroplast translational elongation factor Tu.;Transcript_evidence=AK119587 (DDBJ%2C Best hit);ORF_evidence=Q8W2C3 (UniProt);GO=Biological Process: translational elongation (GO:0006414),Cellular Component: intracellular (GO:0005622),Molecular Function: translation elongation factor activity (GO:0003746),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Protein synthesis factor%2C GTP-binding (IPR000795),Translation elongation factor EFTu/EF1A%2C C-terminal (IPR004160),Translation elongation factor EFTu/EF1A%2C domain 2 (IPR004161),Translation elongation factor EFTu/EF1A%2C bacterial/organelle (IPR004541),Small GTP-binding protein domain (IPR005225),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Translation elongation factor EF1A/initiation factor IF2gamma%2C C-terminal (IPR009001);NIAS_FLcDNA=002-117-C11;Oryzabase=15693;Expression=AK119587;TENOR=Os02t0595700-01;KEGG=Os02t0595700-01 (EC:3.6.5.3)
Chr02	irgsp1_rep	five_prime_UTR	23111937	23112039	.	+	.	Parent=Os02t0595700-01
Chr02	irgsp1_rep	CDS	23112040	23113443	.	+	0	Parent=Os02t0595700-01
Chr02	irgsp1_rep	three_prime_UTR	23113444	23113830	.	+	.	Parent=Os02t0595700-01
Chr02	irgsp1_rep	mRNA	23111968	23113604	.	+	.	ID=Os02t0595700-02;Name=Os02t0595700-02;Locus_id=Os02g0595700;CGSNL Gene Symbol=EFTU;CGSNL Gene Name=ELONGATION FACTOR TU;Oryzabase Gene Symbol Synonym(s)=tufA%2C EF-Tu;Oryzabase Gene Name Synonym(s)=chloroplast elongation factor EF-Tu%2C elongation factor Tu;Note=Chloroplast elongation factor TuA (EF-TuA) precursor (Fragment).;Transcript_evidence=AK066858 (DDBJ%2C Best hit);ORF_evidence=Q8W2C3 (UniProt);GO=Biological Process: translational elongation (GO:0006414),Cellular Component: intracellular (GO:0005622),Molecular Function: translation elongation factor activity (GO:0003746),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Protein synthesis factor%2C GTP-binding (IPR000795),Translation elongation factor EFTu/EF1A%2C C-terminal (IPR004160),Translation elongation factor EFTu/EF1A%2C bacterial/organelle (IPR004541),Translation elongation factor EF1A/initiation factor IF2gamma%2C C-terminal (IPR009001);NIAS_FLcDNA=J013084O08;Oryzabase=15693;Expression=AK066858;TENOR=Os02t0595700-02;KEGG=Os02t0595700-02 (EC:3.6.5.3)
Chr02	irgsp1_rep	five_prime_UTR	23111968	23112039	.	+	.	Parent=Os02t0595700-02
Chr02	irgsp1_rep	CDS	23112040	23112053	.	+	0	Parent=Os02t0595700-02
Chr02	irgsp1_rep	CDS	23112435	23112768	.	+	1	Parent=Os02t0595700-02
Chr02	irgsp1_rep	CDS	23113129	23113443	.	+	0	Parent=Os02t0595700-02
Chr02	irgsp1_rep	three_prime_UTR	23113444	23113604	.	+	.	Parent=Os02t0595700-02
Chr02	irgsp1_rep	mRNA	23112009	23113708	.	+	.	ID=Os02t0595700-04;Name=Os02t0595700-04;Locus_id=Os02g0595700;CGSNL Gene Symbol=EFTU;CGSNL Gene Name=ELONGATION FACTOR TU;Oryzabase Gene Symbol Synonym(s)=tufA%2C EF-Tu;Oryzabase Gene Name Synonym(s)=chloroplast elongation factor EF-Tu%2C elongation factor Tu;Note=Chloroplast translational elongation factor Tu.;Transcript_evidence=AK064937 (DDBJ%2C Best hit),AK104785 (DDBJ%2C Best hit);ORF_evidence=Q8W2C3 (UniProt);GO=Biological Process: translational elongation (GO:0006414),Cellular Component: intracellular (GO:0005622),Molecular Function: translation elongation factor activity (GO:0003746),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Protein synthesis factor%2C GTP-binding (IPR000795),Translation elongation factor EFTu/EF1A%2C C-terminal (IPR004160),Translation elongation factor EFTu/EF1A%2C domain 2 (IPR004161),Translation elongation factor EFTu/EF1A%2C bacterial/organelle (IPR004541),Small GTP-binding protein domain (IPR005225),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Translation elongation factor EF1A/initiation factor IF2gamma%2C C-terminal (IPR009001);NIAS_FLcDNA=J013000P03,001-039-D07;Oryzabase=15693;Expression=AK064937;TENOR=Os02t0595700-04;KEGG=Os02t0595700-04 (EC:3.6.5.3)
Chr02	irgsp1_rep	five_prime_UTR	23112009	23112039	.	+	.	Parent=Os02t0595700-04
Chr02	irgsp1_rep	CDS	23112040	23113443	.	+	0	Parent=Os02t0595700-04
Chr02	irgsp1_rep	three_prime_UTR	23113444	23113708	.	+	.	Parent=Os02t0595700-04
Chr02	irgsp1_rep	mRNA	23116208	23120443	.	+	.	ID=Os02t0595800-01;Name=Os02t0595800-01;Locus_id=Os02g0595800;Note=Similar to Eukaryotic initiation factor 4B (Fragment).;Transcript_evidence=AK287641 (DDBJ%2C Best hit);ORF_evidence=B6TRD2 (UniProt);InterPro=Plant specific eukaryotic initiation factor 4B (IPR010433);NIAS_FLcDNA=J065079B18;TENOR=Os02t0595800-01;KEGG=Os02t0595800-01
Chr02	irgsp1_rep	five_prime_UTR	23116208	23116338	.	+	.	Parent=Os02t0595800-01
Chr02	irgsp1_rep	CDS	23116339	23117495	.	+	0	Parent=Os02t0595800-01
Chr02	irgsp1_rep	CDS	23119563	23119940	.	+	1	Parent=Os02t0595800-01
Chr02	irgsp1_rep	CDS	23120113	23120137	.	+	1	Parent=Os02t0595800-01
Chr02	irgsp1_rep	three_prime_UTR	23120138	23120443	.	+	.	Parent=Os02t0595800-01
Chr02	irgsp1_rep	mRNA	23121133	23123149	.	-	.	ID=Os02t0595900-01;Name=Os02t0595900-01;Locus_id=Os02g0595900;RAP-DB Gene Symbol Synonym(s)=NAR2.1%2C OsNAR2.1%2C OsNRT3.1A;RAP-DB Gene Name Synonym(s)=ACTIVATOR FOR NRT2%2C activator for NRT2%2C high-affinity nitrate transporter-activating element 2.1;CGSNL Gene Symbol=NAR2.1;CGSNL Gene Name=ACTIVATOR FOR NRT2;Oryzabase Gene Symbol Synonym(s)=OsNAR2.1%2C OsNRT3.1A;Oryzabase Gene Name Synonym(s)=activator for NRT2%2C high-affinity nitrate transporter-activating element 2.1;Note=Partner protein of NRT2%2C Activator for NRT2%2C High-affinity nitrate transport;Transcript_evidence=Inferred from literature;ORF_evidence=Q6ZI50;InterPro=Transporter%2C high affinity nitrate%2C Nar2 (IPR016605);Manual Curation=August 28%2C 2014;Literature_PMID=25103875,21220781;Oryzabase=6237;TENOR=Os02t0595900-00
Chr02	irgsp1_rep	five_prime_UTR	23123055	23123149	.	-	.	Parent=Os02t0595900-01
Chr02	irgsp1_rep	CDS	23122895	23123054	.	-	0	Parent=Os02t0595900-01
Chr02	irgsp1_rep	CDS	23121371	23121831	.	-	2	Parent=Os02t0595900-01
Chr02	irgsp1_rep	three_prime_UTR	23121133	23121370	.	-	.	Parent=Os02t0595900-01
Chr02	irgsp1_rep	mRNA	23126927	23129898	.	-	.	ID=Os02t0596000-01;Name=Os02t0596000-01;Locus_id=Os02g0596000;CGSNL Gene Symbol=STR1;CGSNL Gene Name=SULFURTRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=OsStr1;Oryzabase Gene Name Synonym(s)=Sulfurtransferase 1;Note=Rhodanese-like domain containing protein.;Transcript_evidence=AK072766 (DDBJ%2C Best hit);ORF_evidence=B8AER2 (UniProt);InterPro=Rhodanese-like (IPR001763);NIAS_FLcDNA=J023139H13;Oryzabase=12051;Expression=AK072766;TENOR=Os02t0596000-01;KEGG=Os02t0596000-01
Chr02	irgsp1_rep	five_prime_UTR	23129868	23129898	.	-	.	Parent=Os02t0596000-01
Chr02	irgsp1_rep	CDS	23129739	23129867	.	-	0	Parent=Os02t0596000-01
Chr02	irgsp1_rep	CDS	23129523	23129639	.	-	0	Parent=Os02t0596000-01
Chr02	irgsp1_rep	CDS	23129252	23129359	.	-	0	Parent=Os02t0596000-01
Chr02	irgsp1_rep	CDS	23129046	23129142	.	-	0	Parent=Os02t0596000-01
Chr02	irgsp1_rep	CDS	23128612	23128651	.	-	2	Parent=Os02t0596000-01
Chr02	irgsp1_rep	CDS	23128452	23128526	.	-	1	Parent=Os02t0596000-01
Chr02	irgsp1_rep	CDS	23128195	23128282	.	-	1	Parent=Os02t0596000-01
Chr02	irgsp1_rep	CDS	23127807	23127874	.	-	0	Parent=Os02t0596000-01
Chr02	irgsp1_rep	CDS	23127393	23127465	.	-	1	Parent=Os02t0596000-01
Chr02	irgsp1_rep	CDS	23127225	23127308	.	-	0	Parent=Os02t0596000-01
Chr02	irgsp1_rep	three_prime_UTR	23126927	23127224	.	-	.	Parent=Os02t0596000-01
Chr02	irgsp1_rep	mRNA	23126925	23128494	.	-	.	ID=Os02t0596000-02;Name=Os02t0596000-02;Locus_id=Os02g0596000;CGSNL Gene Symbol=STR1;CGSNL Gene Name=SULFURTRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=OsStr1;Oryzabase Gene Name Synonym(s)=Sulfurtransferase 1;Note=Similar to predicted protein.;Transcript_evidence=AK062238 (DDBJ%2C Best hit);ORF_evidence=B8AER2 (UniProt);InterPro=Rhodanese-like (IPR001763);NIAS_FLcDNA=001-047-E05;Oryzabase=12051;Expression=AK062238;TENOR=Os02t0596000-02;KEGG=Os02t0596000-02
Chr02	irgsp1_rep	five_prime_UTR	23128493	23128494	.	-	.	Parent=Os02t0596000-02
Chr02	irgsp1_rep	CDS	23128452	23128492	.	-	0	Parent=Os02t0596000-02
Chr02	irgsp1_rep	CDS	23128195	23128282	.	-	1	Parent=Os02t0596000-02
Chr02	irgsp1_rep	CDS	23127807	23127874	.	-	0	Parent=Os02t0596000-02
Chr02	irgsp1_rep	CDS	23127393	23127465	.	-	1	Parent=Os02t0596000-02
Chr02	irgsp1_rep	CDS	23127225	23127308	.	-	0	Parent=Os02t0596000-02
Chr02	irgsp1_rep	three_prime_UTR	23126925	23127224	.	-	.	Parent=Os02t0596000-02
Chr02	irgsp1_rep	mRNA	23132117	23140289	.	-	.	ID=Os02t0596100-01;Name=Os02t0596100-01;Locus_id=Os02g0596100;Note=GLE1-like domain containing protein.;Transcript_evidence=AK073510 (DDBJ%2C Best hit);ORF_evidence=A3A8M7 (UniProt);GO=Biological Process: poly(A)+ mRNA export from nucleus (GO:0016973),Cellular Component: nuclear pore (GO:0005643);InterPro=GLE1-like (IPR012476);NIAS_FLcDNA=J033046G18;TENOR=Os02t0596100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	23140016	23140289	.	-	.	Parent=Os02t0596100-01
Chr02	irgsp1_rep	CDS	23139948	23140015	.	-	0	Parent=Os02t0596100-01
Chr02	irgsp1_rep	CDS	23139708	23139854	.	-	1	Parent=Os02t0596100-01
Chr02	irgsp1_rep	CDS	23139443	23139598	.	-	1	Parent=Os02t0596100-01
Chr02	irgsp1_rep	CDS	23139185	23139308	.	-	1	Parent=Os02t0596100-01
Chr02	irgsp1_rep	CDS	23138407	23138555	.	-	0	Parent=Os02t0596100-01
Chr02	irgsp1_rep	CDS	23137193	23137364	.	-	1	Parent=Os02t0596100-01
Chr02	irgsp1_rep	CDS	23136697	23136883	.	-	0	Parent=Os02t0596100-01
Chr02	irgsp1_rep	CDS	23135876	23135970	.	-	2	Parent=Os02t0596100-01
Chr02	irgsp1_rep	CDS	23135654	23135724	.	-	0	Parent=Os02t0596100-01
Chr02	irgsp1_rep	CDS	23135342	23135423	.	-	1	Parent=Os02t0596100-01
Chr02	irgsp1_rep	CDS	23134616	23134711	.	-	0	Parent=Os02t0596100-01
Chr02	irgsp1_rep	CDS	23133798	23133881	.	-	0	Parent=Os02t0596100-01
Chr02	irgsp1_rep	CDS	23133470	23133598	.	-	0	Parent=Os02t0596100-01
Chr02	irgsp1_rep	CDS	23132810	23132932	.	-	0	Parent=Os02t0596100-01
Chr02	irgsp1_rep	CDS	23132496	23132717	.	-	0	Parent=Os02t0596100-01
Chr02	irgsp1_rep	three_prime_UTR	23132117	23132495	.	-	.	Parent=Os02t0596100-01
Chr02	irgsp1_rep	mRNA	23142111	23144293	.	+	.	ID=Os02t0596200-01;Name=Os02t0596200-01;Locus_id=Os02g0596200;CGSNL Gene Symbol=LSSR1;CGSNL Gene Name=LOW SEED SETTING RATE1;Oryzabase Gene Symbol Synonym(s)=OsLSSR1;Oryzabase Gene Name Synonym(s)=LOW SEED SETTING RATE 1;Note=Glycoside hydrolase%2C family 5 protein.;Transcript_evidence=AK109907 (DDBJ%2C Best hit);ORF_evidence=B4FSU9 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 5 (IPR001547),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=002-149-G06;Oryzabase=23083;Expression=AK109907;TENOR=Os02t0596200-01;KEGG=Os02t0596200-01
Chr02	irgsp1_rep	five_prime_UTR	23142111	23142178	.	+	.	Parent=Os02t0596200-01
Chr02	irgsp1_rep	CDS	23142179	23143241	.	+	0	Parent=Os02t0596200-01
Chr02	irgsp1_rep	CDS	23143739	23144025	.	+	2	Parent=Os02t0596200-01
Chr02	irgsp1_rep	three_prime_UTR	23144026	23144293	.	+	.	Parent=Os02t0596200-01
Chr02	irgsp1_rep	mRNA	23142015	23144272	.	+	.	ID=Os02t0596200-02;Name=Os02t0596200-02;Locus_id=Os02g0596200;RAP-DB Gene Symbol Synonym(s)=LSSR1;RAP-DB Gene Name Synonym(s)=LOW SEED SETTING RATE1;CGSNL Gene Symbol=LSSR1;CGSNL Gene Name=LOW SEED SETTING RATE1;Oryzabase Gene Symbol Synonym(s)=OsLSSR1;Oryzabase Gene Name Synonym(s)=LOW SEED SETTING RATE 1;Note=Putative GH5 cellulase%2C Regulation of seed setting rate%2C Promotion of fertilization;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase superfamily (IPR017853),Glycoside hydrolase%2C family 5 (IPR001547);Manual Curation=May 16%2C 2019;Literature_PMID=31073866;Oryzabase=23083;Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737)
Chr02	irgsp1_rep	five_prime_UTR	23142015	23142178	.	+	.	Parent=Os02t0596200-02
Chr02	irgsp1_rep	CDS	23142179	23143364	.	+	0	Parent=Os02t0596200-02
Chr02	irgsp1_rep	CDS	23143463	23144025	.	+	2	Parent=Os02t0596200-02
Chr02	irgsp1_rep	three_prime_UTR	23144026	23144272	.	+	.	Parent=Os02t0596200-02
Chr02	irgsp1_rep	mRNA	23152884	23154628	.	-	.	ID=Os02t0596300-01;Name=Os02t0596300-01;Locus_id=Os02g0596300;CGSNL Gene Symbol=CYP94E1;CGSNL Gene Name=CYTOCHROME P450 94E1;Oryzabase Gene Symbol Synonym(s)=OsCYP94E1;Oryzabase Gene Name Synonym(s)=CytoChrome P450 94E1;Note=CytoChrome P450 domain containing protein.;Transcript_evidence=AK109775 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=002-147-B04;Oryzabase=23112;TENOR=Os02t0596300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	23153168	23154628	.	-	0	Parent=Os02t0596300-01
Chr02	irgsp1_rep	three_prime_UTR	23152884	23153167	.	-	.	Parent=Os02t0596300-01
Chr02	irgsp1_rep	mRNA	23159865	23163343	.	-	.	ID=Os02t0596500-01;Name=Os02t0596500-01;Locus_id=Os02g0596500;Note=Similar to Charged multivesicular body protein 6.;Transcript_evidence=AK072562 (DDBJ%2C Best hit);ORF_evidence=B6TFV6 (UniProt);GO=Biological Process: protein transport (GO:0015031);InterPro=Snf7 (IPR005024);NIAS_FLcDNA=J023132G14;TENOR=Os02t0596500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	23163212	23163343	.	-	.	Parent=Os02t0596500-01
Chr02	irgsp1_rep	CDS	23163095	23163211	.	-	0	Parent=Os02t0596500-01
Chr02	irgsp1_rep	CDS	23161405	23161557	.	-	0	Parent=Os02t0596500-01
Chr02	irgsp1_rep	CDS	23161102	23161254	.	-	0	Parent=Os02t0596500-01
Chr02	irgsp1_rep	CDS	23160443	23160526	.	-	0	Parent=Os02t0596500-01
Chr02	irgsp1_rep	CDS	23160136	23160304	.	-	0	Parent=Os02t0596500-01
Chr02	irgsp1_rep	CDS	23160030	23160055	.	-	2	Parent=Os02t0596500-01
Chr02	irgsp1_rep	three_prime_UTR	23159865	23160029	.	-	.	Parent=Os02t0596500-01
Chr02	irgsp1_rep	mRNA	23172608	23174864	.	+	.	ID=Os02t0596700-00;Name=Os02t0596700-00;Locus_id=Os02g0596700;Note=Similar to protein binding protein.;Transcript_evidence=FP091361 (DDBJ);ORF_evidence=NP_001147219.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),BTB/POZ fold (IPR011333);TENOR=Os02t0596700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	23172608	23172709	.	+	0	Parent=Os02t0596700-00
Chr02	irgsp1_rep	CDS	23172836	23172954	.	+	0	Parent=Os02t0596700-00
Chr02	irgsp1_rep	CDS	23173055	23173715	.	+	1	Parent=Os02t0596700-00
Chr02	irgsp1_rep	CDS	23174507	23174521	.	+	0	Parent=Os02t0596700-00
Chr02	irgsp1_rep	three_prime_UTR	23174522	23174864	.	+	.	Parent=Os02t0596700-00
Chr02	irgsp1_rep	mRNA	23177585	23182048	.	+	.	ID=Os02t0596900-01;Name=Os02t0596900-01;Locus_id=Os02g0596900;Note=Actin/actin-like family protein.;Transcript_evidence=AK101163 (DDBJ%2C Best hit);ORF_evidence=Q6K908 (UniProt);GO=Biological Process: regulation of actin filament polymerization (GO:0030833),Cellular Component: cytoskeleton (GO:0005856),Molecular Function: actin binding (GO:0003779),Molecular Function: ATP binding (GO:0005524);InterPro=Actin-like (IPR004000),Actin-related protein 3 (IPR015623);NIAS_FLcDNA=J033028A09;Expression=AK101163;TENOR=Os02t0596900-01;KEGG=Os02t0596900-01
Chr02	irgsp1_rep	five_prime_UTR	23177585	23177900	.	+	.	Parent=Os02t0596900-01
Chr02	irgsp1_rep	CDS	23177901	23177947	.	+	0	Parent=Os02t0596900-01
Chr02	irgsp1_rep	CDS	23178050	23178287	.	+	1	Parent=Os02t0596900-01
Chr02	irgsp1_rep	CDS	23178399	23178623	.	+	0	Parent=Os02t0596900-01
Chr02	irgsp1_rep	CDS	23179223	23179369	.	+	0	Parent=Os02t0596900-01
Chr02	irgsp1_rep	CDS	23180022	23180114	.	+	0	Parent=Os02t0596900-01
Chr02	irgsp1_rep	CDS	23180532	23180651	.	+	0	Parent=Os02t0596900-01
Chr02	irgsp1_rep	CDS	23180910	23181020	.	+	0	Parent=Os02t0596900-01
Chr02	irgsp1_rep	CDS	23181093	23181218	.	+	0	Parent=Os02t0596900-01
Chr02	irgsp1_rep	CDS	23181338	23181436	.	+	0	Parent=Os02t0596900-01
Chr02	irgsp1_rep	CDS	23181631	23181711	.	+	0	Parent=Os02t0596900-01
Chr02	irgsp1_rep	three_prime_UTR	23181712	23182048	.	+	.	Parent=Os02t0596900-01
Chr02	irgsp1_rep	mRNA	23183131	23186475	.	-	.	ID=Os02t0597000-01;Name=Os02t0597000-01;Locus_id=Os02g0597000;Note=Regulator of Chromosome condensation%2C RCC1 domain containing protein.;Transcript_evidence=AK102225 (DDBJ%2C Best hit);ORF_evidence=B4FSP2 (UniProt);InterPro=Regulator of Chromosome condensation%2C RCC1 (IPR000408),Regulator of Chromosome condensation/beta-lactamase-inhibitor protein II (IPR009091);NIAS_FLcDNA=J033087N01;Expression=AK102225;TENOR=Os02t0597000-01;KEGG=Os02t0597000-01
Chr02	irgsp1_rep	five_prime_UTR	23186354	23186475	.	-	.	Parent=Os02t0597000-01
Chr02	irgsp1_rep	five_prime_UTR	23185330	23185389	.	-	.	Parent=Os02t0597000-01
Chr02	irgsp1_rep	CDS	23185091	23185329	.	-	0	Parent=Os02t0597000-01
Chr02	irgsp1_rep	CDS	23184667	23185002	.	-	1	Parent=Os02t0597000-01
Chr02	irgsp1_rep	CDS	23184199	23184597	.	-	1	Parent=Os02t0597000-01
Chr02	irgsp1_rep	CDS	23183710	23184076	.	-	1	Parent=Os02t0597000-01
Chr02	irgsp1_rep	CDS	23183346	23183618	.	-	0	Parent=Os02t0597000-01
Chr02	irgsp1_rep	three_prime_UTR	23183131	23183345	.	-	.	Parent=Os02t0597000-01
Chr02	irgsp1_rep	mRNA	23209707	23210456	.	+	.	ID=Os02t0597200-01;Name=Os02t0597200-01;Locus_id=Os02g0597200;Note=Conserved hypothetical protein.;Transcript_evidence=AK064896 (DDBJ%2C Best hit);ORF_evidence=A2X6S5 (UniProt);NIAS_FLcDNA=J013000L09;TENOR=Os02t0597200-01;KEGG=Os02t0597200-01
Chr02	irgsp1_rep	five_prime_UTR	23209707	23209808	.	+	.	Parent=Os02t0597200-01
Chr02	irgsp1_rep	CDS	23209809	23210171	.	+	0	Parent=Os02t0597200-01
Chr02	irgsp1_rep	three_prime_UTR	23210172	23210456	.	+	.	Parent=Os02t0597200-01
Chr02	irgsp1_rep	mRNA	23211709	23219912	.	+	.	ID=Os02t0597300-01;Name=Os02t0597300-01;Locus_id=Os02g0597300;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=AK064487 (DDBJ%2C Best hit);ORF_evidence=B9F0W1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=002-111-B09;TENOR=Os02t0597300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	23211709	23211709	.	+	.	Parent=Os02t0597300-01
Chr02	irgsp1_rep	CDS	23211710	23211812	.	+	0	Parent=Os02t0597300-01
Chr02	irgsp1_rep	CDS	23212794	23214802	.	+	2	Parent=Os02t0597300-01
Chr02	irgsp1_rep	CDS	23219590	23219751	.	+	0	Parent=Os02t0597300-01
Chr02	irgsp1_rep	three_prime_UTR	23219752	23219912	.	+	.	Parent=Os02t0597300-01
Chr02	irgsp1_rep	mRNA	23228826	23230766	.	+	.	ID=Os02t0597700-00;Name=Os02t0597700-00;Locus_id=Os02g0597700;Note=Ubiquitin domain containing protein.;Transcript_evidence=EU973670 (DDBJ);ORF_evidence=Q01JV2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin (IPR000626),Ubiquitin supergroup (IPR019955);TENOR=Os02t0597700-00;KEGG=Os02t0597700-00
Chr02	irgsp1_rep	five_prime_UTR	23228826	23228828	.	+	.	Parent=Os02t0597700-00
Chr02	irgsp1_rep	CDS	23228829	23229102	.	+	0	Parent=Os02t0597700-00
Chr02	irgsp1_rep	CDS	23230165	23230397	.	+	2	Parent=Os02t0597700-00
Chr02	irgsp1_rep	three_prime_UTR	23230398	23230587	.	+	.	Parent=Os02t0597700-00
Chr02	irgsp1_rep	three_prime_UTR	23230658	23230766	.	+	.	Parent=Os02t0597700-00
Chr02	irgsp1_rep	mRNA	23237192	23241415	.	+	.	ID=Os02t0597800-01;Name=Os02t0597800-01;Locus_id=Os02g0597800;Note=Nuclear hormone receptor%2C ligand-binding domain containing protein.;Transcript_evidence=AK072807 (DDBJ%2C Best hit);ORF_evidence=Q01IG5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: steroid hormone mediated signaling pathway (GO:0043401),Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: steroid hormone receptor activity (GO:0003707);InterPro=Nuclear hormone receptor%2C ligand-binding (IPR008946);NIAS_FLcDNA=J023140E08;Expression=AK072807;TENOR=Os02t0597800-01;KEGG=Os02t0597800-01
Chr02	irgsp1_rep	five_prime_UTR	23237192	23237649	.	+	.	Parent=Os02t0597800-01
Chr02	irgsp1_rep	five_prime_UTR	23237761	23237802	.	+	.	Parent=Os02t0597800-01
Chr02	irgsp1_rep	CDS	23237803	23237896	.	+	0	Parent=Os02t0597800-01
Chr02	irgsp1_rep	CDS	23238488	23238596	.	+	2	Parent=Os02t0597800-01
Chr02	irgsp1_rep	CDS	23238700	23238892	.	+	1	Parent=Os02t0597800-01
Chr02	irgsp1_rep	CDS	23239013	23239149	.	+	0	Parent=Os02t0597800-01
Chr02	irgsp1_rep	CDS	23239485	23239773	.	+	1	Parent=Os02t0597800-01
Chr02	irgsp1_rep	CDS	23239872	23239978	.	+	0	Parent=Os02t0597800-01
Chr02	irgsp1_rep	CDS	23240055	23240199	.	+	1	Parent=Os02t0597800-01
Chr02	irgsp1_rep	CDS	23240424	23240622	.	+	0	Parent=Os02t0597800-01
Chr02	irgsp1_rep	CDS	23240702	23240945	.	+	2	Parent=Os02t0597800-01
Chr02	irgsp1_rep	CDS	23241025	23241265	.	+	1	Parent=Os02t0597800-01
Chr02	irgsp1_rep	three_prime_UTR	23241266	23241415	.	+	.	Parent=Os02t0597800-01
Chr02	irgsp1_rep	mRNA	23238188	23239013	.	-	.	ID=Os02t0597850-01;Name=Os02t0597850-01;Locus_id=Os02g0597850;Note=Non-protein coding transcript.;Transcript_evidence=AK108372 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-142-D09;TENOR=Os02t0597850-01
Chr02	irgsp1_rep	exon	23238188	23239013	.	-	.	Parent=Os02t0597850-01
Chr02	irgsp1_rep	mRNA	23241660	23242066	.	-	.	ID=Os02t0597900-01;Name=Os02t0597900-01;Locus_id=Os02g0597900;Oryzabase Gene Name Synonym(s)=beta-ketoacyl reductase;Note=Similar to B-keto acyl reductase.;Transcript_evidence=AK242447 (DDBJ%2C Best hit);ORF_evidence=NP_001105406.1 (RefSeq);NIAS_FLcDNA=J080095L07;Oryzabase=16030;TENOR=Os02t0597900-01;KEGG=Os02t0597900-01
Chr02	irgsp1_rep	five_prime_UTR	23242066	23242066	.	-	.	Parent=Os02t0597900-01
Chr02	irgsp1_rep	CDS	23241880	23242065	.	-	0	Parent=Os02t0597900-01
Chr02	irgsp1_rep	three_prime_UTR	23241660	23241879	.	-	.	Parent=Os02t0597900-01
Chr02	irgsp1_rep	mRNA	23241662	23244266	.	+	.	ID=Os02t0597950-00;Name=Os02t0597950-00;Locus_id=Os02g0597950;Note=Non-protein coding transcript.;Transcript_evidence=BT019228 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0597950-00
Chr02	irgsp1_rep	exon	23241662	23242135	.	+	.	Parent=Os02t0597950-00
Chr02	irgsp1_rep	exon	23242848	23242915	.	+	.	Parent=Os02t0597950-00
Chr02	irgsp1_rep	exon	23243906	23244266	.	+	.	Parent=Os02t0597950-00
Chr02	irgsp1_rep	mRNA	23259006	23262297	.	-	.	ID=Os02t0598200-01;Name=Os02t0598200-01;Locus_id=Os02g0598200;Note=Hypothetical conserved gene.;Transcript_evidence=AK064548 (DDBJ%2C Best hit);ORF_evidence=A3A8P4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=002-112-B08;Expression=AK064548;TENOR=Os02t0598200-01;KEGG=Os02t0598200-01
Chr02	irgsp1_rep	five_prime_UTR	23262052	23262297	.	-	.	Parent=Os02t0598200-01
Chr02	irgsp1_rep	five_prime_UTR	23261338	23261407	.	-	.	Parent=Os02t0598200-01
Chr02	irgsp1_rep	CDS	23260168	23261337	.	-	0	Parent=Os02t0598200-01
Chr02	irgsp1_rep	CDS	23259006	23259290	.	-	0	Parent=Os02t0598200-01
Chr02	irgsp1_rep	mRNA	23255089	23262295	.	-	.	ID=Os02t0598200-02;Name=Os02t0598200-02;Locus_id=Os02g0598200;Note=Transcriptional factor B3 family protein.;Transcript_evidence=AK121990 (DDBJ%2C Best hit);ORF_evidence=Q6K5K2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=J033109I02;Expression=AK121990;TENOR=Os02t0598200-02;KEGG=Os02t0598200-02
Chr02	irgsp1_rep	five_prime_UTR	23262052	23262295	.	-	.	Parent=Os02t0598200-02
Chr02	irgsp1_rep	five_prime_UTR	23261338	23261407	.	-	.	Parent=Os02t0598200-02
Chr02	irgsp1_rep	CDS	23260168	23261337	.	-	0	Parent=Os02t0598200-02
Chr02	irgsp1_rep	CDS	23257826	23259290	.	-	0	Parent=Os02t0598200-02
Chr02	irgsp1_rep	CDS	23257554	23257670	.	-	2	Parent=Os02t0598200-02
Chr02	irgsp1_rep	CDS	23257316	23257458	.	-	2	Parent=Os02t0598200-02
Chr02	irgsp1_rep	CDS	23255552	23255803	.	-	0	Parent=Os02t0598200-02
Chr02	irgsp1_rep	three_prime_UTR	23255476	23255551	.	-	.	Parent=Os02t0598200-02
Chr02	irgsp1_rep	three_prime_UTR	23255089	23255378	.	-	.	Parent=Os02t0598200-02
Chr02	irgsp1_rep	mRNA	23255087	23261133	.	-	.	ID=Os02t0598200-03;Name=Os02t0598200-03;Locus_id=Os02g0598200;Note=Transcriptional factor B3 domain containing protein.;Transcript_evidence=AK064402 (DDBJ%2C Best hit);ORF_evidence=Q6K5K2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=002-108-H05;TENOR=Os02t0598200-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	23261098	23261133	.	-	.	Parent=Os02t0598200-03
Chr02	irgsp1_rep	CDS	23260168	23261097	.	-	0	Parent=Os02t0598200-03
Chr02	irgsp1_rep	CDS	23257826	23259290	.	-	0	Parent=Os02t0598200-03
Chr02	irgsp1_rep	CDS	23257554	23257670	.	-	2	Parent=Os02t0598200-03
Chr02	irgsp1_rep	CDS	23257316	23257458	.	-	2	Parent=Os02t0598200-03
Chr02	irgsp1_rep	CDS	23255552	23255803	.	-	0	Parent=Os02t0598200-03
Chr02	irgsp1_rep	three_prime_UTR	23255476	23255551	.	-	.	Parent=Os02t0598200-03
Chr02	irgsp1_rep	three_prime_UTR	23255087	23255378	.	-	.	Parent=Os02t0598200-03
Chr02	irgsp1_rep	mRNA	23266498	23271949	.	+	.	ID=Os02t0598300-01;Name=Os02t0598300-01;Locus_id=Os02g0598300;Note=Conserved hypothetical protein.;Transcript_evidence=AK105842 (DDBJ%2C Best hit);ORF_evidence=Q6K5K0 (UniProt);NIAS_FLcDNA=001-203-F09;Expression=AK105842;TENOR=Os02t0598300-01;KEGG=Os02t0598300-01
Chr02	irgsp1_rep	five_prime_UTR	23266498	23266505	.	+	.	Parent=Os02t0598300-01
Chr02	irgsp1_rep	CDS	23266506	23267416	.	+	0	Parent=Os02t0598300-01
Chr02	irgsp1_rep	CDS	23270702	23270714	.	+	1	Parent=Os02t0598300-01
Chr02	irgsp1_rep	three_prime_UTR	23270715	23270727	.	+	.	Parent=Os02t0598300-01
Chr02	irgsp1_rep	three_prime_UTR	23270980	23271124	.	+	.	Parent=Os02t0598300-01
Chr02	irgsp1_rep	three_prime_UTR	23271202	23271283	.	+	.	Parent=Os02t0598300-01
Chr02	irgsp1_rep	three_prime_UTR	23271505	23271949	.	+	.	Parent=Os02t0598300-01
Chr02	irgsp1_rep	mRNA	23270207	23271798	.	-	.	ID=Os02t0598350-00;Name=Os02t0598350-00;Locus_id=Os02g0598350;Note=Hypothetical gene.;Transcript_evidence=BT016907 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0598350-00;KEGG=Os02t0598350-00
Chr02	irgsp1_rep	five_prime_UTR	23271504	23271798	.	-	.	Parent=Os02t0598350-00
Chr02	irgsp1_rep	five_prime_UTR	23271225	23271282	.	-	.	Parent=Os02t0598350-00
Chr02	irgsp1_rep	CDS	23271220	23271224	.	-	0	Parent=Os02t0598350-00
Chr02	irgsp1_rep	CDS	23270970	23271135	.	-	1	Parent=Os02t0598350-00
Chr02	irgsp1_rep	CDS	23270657	23270716	.	-	0	Parent=Os02t0598350-00
Chr02	irgsp1_rep	three_prime_UTR	23270207	23270656	.	-	.	Parent=Os02t0598350-00
Chr02	irgsp1_rep	mRNA	23272523	23273306	.	+	.	ID=Os02t0598400-01;Name=Os02t0598400-01;Locus_id=Os02g0598400;Note=Hypothetical conserved gene.;Transcript_evidence=AK109577 (DDBJ%2C Best hit);ORF_evidence=A3A8P6 (UniProt);NIAS_FLcDNA=002-134-E08;Expression=AK109577;TENOR=Os02t0598400-01;KEGG=Os02t0598400-01
Chr02	irgsp1_rep	five_prime_UTR	23272523	23272592	.	+	.	Parent=Os02t0598400-01
Chr02	irgsp1_rep	CDS	23272593	23272788	.	+	0	Parent=Os02t0598400-01
Chr02	irgsp1_rep	CDS	23272896	23272924	.	+	2	Parent=Os02t0598400-01
Chr02	irgsp1_rep	CDS	23273051	23273062	.	+	0	Parent=Os02t0598400-01
Chr02	irgsp1_rep	three_prime_UTR	23273063	23273306	.	+	.	Parent=Os02t0598400-01
Chr02	irgsp1_rep	mRNA	23272550	23279668	.	+	.	ID=Os02t0598400-02;Name=Os02t0598400-02;Locus_id=Os02g0598400;Note=Lipovitellin%2C superhelical domain containing protein.;Transcript_evidence=AK068111 (DDBJ%2C Best hit);ORF_evidence=Q6K1U1 (UniProt);InterPro=Telomere length regulation protein%2C conserved domain (IPR019337);NIAS_FLcDNA=J013132M15;Expression=AK068111;TENOR=Os02t0598400-02;KEGG=Os02t0598400-02
Chr02	irgsp1_rep	five_prime_UTR	23272550	23272788	.	+	.	Parent=Os02t0598400-02
Chr02	irgsp1_rep	five_prime_UTR	23272896	23272924	.	+	.	Parent=Os02t0598400-02
Chr02	irgsp1_rep	five_prime_UTR	23274107	23274209	.	+	.	Parent=Os02t0598400-02
Chr02	irgsp1_rep	five_prime_UTR	23275031	23275527	.	+	.	Parent=Os02t0598400-02
Chr02	irgsp1_rep	five_prime_UTR	23276075	23276170	.	+	.	Parent=Os02t0598400-02
Chr02	irgsp1_rep	CDS	23276171	23276346	.	+	0	Parent=Os02t0598400-02
Chr02	irgsp1_rep	CDS	23276733	23276947	.	+	1	Parent=Os02t0598400-02
Chr02	irgsp1_rep	CDS	23277038	23277136	.	+	2	Parent=Os02t0598400-02
Chr02	irgsp1_rep	CDS	23277217	23277725	.	+	2	Parent=Os02t0598400-02
Chr02	irgsp1_rep	CDS	23277810	23278567	.	+	0	Parent=Os02t0598400-02
Chr02	irgsp1_rep	CDS	23278661	23278859	.	+	1	Parent=Os02t0598400-02
Chr02	irgsp1_rep	CDS	23279297	23279452	.	+	0	Parent=Os02t0598400-02
Chr02	irgsp1_rep	three_prime_UTR	23279453	23279668	.	+	.	Parent=Os02t0598400-02
Chr02	irgsp1_rep	mRNA	23279868	23285375	.	+	.	ID=Os02t0598500-00;Name=Os02t0598500-00;Locus_id=Os02g0598500;Note=Protein phosphatase 2C family protein.;Transcript_evidence=AK106903 (DDBJ%2C Secondary hit);ORF_evidence=NP_001047333.1 (RefSeq);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);TENOR=Os02t0598500-00;KEGG=Os02t0598500-00
Chr02	irgsp1_rep	five_prime_UTR	23279868	23279928	.	+	.	Parent=Os02t0598500-00
Chr02	irgsp1_rep	five_prime_UTR	23281791	23281806	.	+	.	Parent=Os02t0598500-00
Chr02	irgsp1_rep	CDS	23281807	23281917	.	+	0	Parent=Os02t0598500-00
Chr02	irgsp1_rep	CDS	23282006	23282075	.	+	0	Parent=Os02t0598500-00
Chr02	irgsp1_rep	CDS	23282587	23282692	.	+	2	Parent=Os02t0598500-00
Chr02	irgsp1_rep	CDS	23282775	23282886	.	+	1	Parent=Os02t0598500-00
Chr02	irgsp1_rep	CDS	23283382	23283504	.	+	0	Parent=Os02t0598500-00
Chr02	irgsp1_rep	CDS	23283607	23283790	.	+	0	Parent=Os02t0598500-00
Chr02	irgsp1_rep	CDS	23283890	23283966	.	+	2	Parent=Os02t0598500-00
Chr02	irgsp1_rep	CDS	23284064	23284116	.	+	0	Parent=Os02t0598500-00
Chr02	irgsp1_rep	CDS	23284290	23284344	.	+	1	Parent=Os02t0598500-00
Chr02	irgsp1_rep	CDS	23284639	23285313	.	+	0	Parent=Os02t0598500-00
Chr02	irgsp1_rep	three_prime_UTR	23285314	23285375	.	+	.	Parent=Os02t0598500-00
Chr02	irgsp1_rep	mRNA	23285971	23287266	.	-	.	ID=Os02t0598600-01;Name=Os02t0598600-01;Locus_id=Os02g0598600;Oryzabase Gene Symbol Synonym(s)=OsFbox099%2C OsFbox99%2C Os_F0180;Oryzabase Gene Name Synonym(s)=F-box protein 99;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK105564 (DDBJ%2C Best hit);ORF_evidence=Q6K1T5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=001-128-C03;Oryzabase=16892;Expression=AK105564;TENOR=Os02t0598600-01;KEGG=Os02t0598600-01
Chr02	irgsp1_rep	five_prime_UTR	23287233	23287266	.	-	.	Parent=Os02t0598600-01
Chr02	irgsp1_rep	CDS	23286099	23287232	.	-	0	Parent=Os02t0598600-01
Chr02	irgsp1_rep	three_prime_UTR	23285971	23286098	.	-	.	Parent=Os02t0598600-01
Chr02	irgsp1_rep	mRNA	23319582	23325945	.	+	.	ID=Os02t0598800-00;Name=Os02t0598800-00;Locus_id=Os02g0598800;Note=Telomere length regulation protein%2C conserved domain domain containing protein.;Transcript_evidence=AK372629 (DDBJ);ORF_evidence=NP_001047336.2 (RefSeq);InterPro=Telomere length regulation protein%2C conserved domain (IPR019337);TENOR=Os02t0598800-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	23319582	23319586	.	+	.	Parent=Os02t0598800-00
Chr02	irgsp1_rep	CDS	23319587	23319794	.	+	0	Parent=Os02t0598800-00
Chr02	irgsp1_rep	CDS	23319884	23319912	.	+	2	Parent=Os02t0598800-00
Chr02	irgsp1_rep	CDS	23320569	23320671	.	+	0	Parent=Os02t0598800-00
Chr02	irgsp1_rep	CDS	23320918	23321089	.	+	2	Parent=Os02t0598800-00
Chr02	irgsp1_rep	CDS	23321487	23321675	.	+	1	Parent=Os02t0598800-00
Chr02	irgsp1_rep	CDS	23321836	23321996	.	+	1	Parent=Os02t0598800-00
Chr02	irgsp1_rep	CDS	23322545	23322815	.	+	2	Parent=Os02t0598800-00
Chr02	irgsp1_rep	CDS	23323202	23323416	.	+	1	Parent=Os02t0598800-00
Chr02	irgsp1_rep	CDS	23323507	23323605	.	+	2	Parent=Os02t0598800-00
Chr02	irgsp1_rep	CDS	23323685	23324193	.	+	2	Parent=Os02t0598800-00
Chr02	irgsp1_rep	CDS	23324278	23325035	.	+	0	Parent=Os02t0598800-00
Chr02	irgsp1_rep	CDS	23325129	23325327	.	+	1	Parent=Os02t0598800-00
Chr02	irgsp1_rep	CDS	23325765	23325920	.	+	0	Parent=Os02t0598800-00
Chr02	irgsp1_rep	three_prime_UTR	23325921	23325945	.	+	.	Parent=Os02t0598800-00
Chr02	irgsp1_rep	mRNA	23332439	23333734	.	-	.	ID=Os02t0598900-01;Name=Os02t0598900-01;Locus_id=Os02g0598900;Oryzabase Gene Symbol Synonym(s)=OsFbox100;Oryzabase Gene Name Synonym(s)=F-box protein 100;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK105564 (DDBJ%2C Best hit);ORF_evidence=Q6K1T5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=001-128-C03;Oryzabase=16893;Expression=AK105564;TENOR=Os02t0598900-01;KEGG=Os02t0598900-01
Chr02	irgsp1_rep	five_prime_UTR	23333701	23333734	.	-	.	Parent=Os02t0598900-01
Chr02	irgsp1_rep	CDS	23332567	23333700	.	-	0	Parent=Os02t0598900-01
Chr02	irgsp1_rep	three_prime_UTR	23332439	23332566	.	-	.	Parent=Os02t0598900-01
Chr02	irgsp1_rep	mRNA	23378082	23384449	.	+	.	ID=Os02t0599100-00;Name=Os02t0599100-00;Locus_id=Os02g0599100;Note=Hypothetical conserved gene.;Transcript_evidence=tplb0009a09 (Wheat FLcDNA);ORF_evidence=Q6K1U1 (UniProt);InterPro=Telomere length regulation protein%2C conserved domain (IPR019337);TENOR=Os02t0599100-00;KEGG=Os02t0599100-00
Chr02	irgsp1_rep	five_prime_UTR	23378082	23378294	.	+	.	Parent=Os02t0599100-00
Chr02	irgsp1_rep	five_prime_UTR	23378384	23378412	.	+	.	Parent=Os02t0599100-00
Chr02	irgsp1_rep	five_prime_UTR	23379069	23379171	.	+	.	Parent=Os02t0599100-00
Chr02	irgsp1_rep	five_prime_UTR	23379418	23379589	.	+	.	Parent=Os02t0599100-00
Chr02	irgsp1_rep	five_prime_UTR	23379987	23380175	.	+	.	Parent=Os02t0599100-00
Chr02	irgsp1_rep	five_prime_UTR	23380336	23380496	.	+	.	Parent=Os02t0599100-00
Chr02	irgsp1_rep	five_prime_UTR	23381045	23381140	.	+	.	Parent=Os02t0599100-00
Chr02	irgsp1_rep	CDS	23381141	23381316	.	+	0	Parent=Os02t0599100-00
Chr02	irgsp1_rep	CDS	23381703	23381917	.	+	1	Parent=Os02t0599100-00
Chr02	irgsp1_rep	CDS	23382008	23382106	.	+	2	Parent=Os02t0599100-00
Chr02	irgsp1_rep	CDS	23382187	23382695	.	+	2	Parent=Os02t0599100-00
Chr02	irgsp1_rep	CDS	23382780	23383537	.	+	0	Parent=Os02t0599100-00
Chr02	irgsp1_rep	CDS	23383631	23383829	.	+	1	Parent=Os02t0599100-00
Chr02	irgsp1_rep	CDS	23384269	23384424	.	+	0	Parent=Os02t0599100-00
Chr02	irgsp1_rep	three_prime_UTR	23384425	23384449	.	+	.	Parent=Os02t0599100-00
Chr02	irgsp1_rep	mRNA	23326336	23331843	.	+	.	ID=Os02t0599150-01;Name=Os02t0599150-01;Locus_id=Os02g0599150;Oryzabase Gene Symbol Synonym(s)=OsPP2C16%2C PP2C16%2C OsPP26;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C16%2C protein phosphatase 2C 16%2C protein phosphatase 26;Note=Hypothetical conserved gene.;Transcript_evidence=AK106903 (DDBJ%2C Best hit);ORF_evidence=Q6K1U4 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=002-118-H10;Oryzabase=17892;TENOR=Os02t0599150-01;KEGG=Os02t0599150-01
Chr02	irgsp1_rep	five_prime_UTR	23326336	23326396	.	+	.	Parent=Os02t0599150-01
Chr02	irgsp1_rep	five_prime_UTR	23328259	23328274	.	+	.	Parent=Os02t0599150-01
Chr02	irgsp1_rep	CDS	23328275	23328385	.	+	0	Parent=Os02t0599150-01
Chr02	irgsp1_rep	CDS	23328474	23328543	.	+	0	Parent=Os02t0599150-01
Chr02	irgsp1_rep	CDS	23329055	23329160	.	+	2	Parent=Os02t0599150-01
Chr02	irgsp1_rep	CDS	23329243	23329354	.	+	1	Parent=Os02t0599150-01
Chr02	irgsp1_rep	CDS	23329850	23329972	.	+	0	Parent=Os02t0599150-01
Chr02	irgsp1_rep	CDS	23330075	23330258	.	+	0	Parent=Os02t0599150-01
Chr02	irgsp1_rep	CDS	23330358	23330434	.	+	2	Parent=Os02t0599150-01
Chr02	irgsp1_rep	CDS	23330532	23330584	.	+	0	Parent=Os02t0599150-01
Chr02	irgsp1_rep	CDS	23330758	23330812	.	+	1	Parent=Os02t0599150-01
Chr02	irgsp1_rep	CDS	23331107	23331781	.	+	0	Parent=Os02t0599150-01
Chr02	irgsp1_rep	three_prime_UTR	23331782	23331843	.	+	.	Parent=Os02t0599150-01
Chr02	irgsp1_rep	mRNA	23386353	23391753	.	+	.	ID=Os02t0599151-00;Name=Os02t0599151-00;Locus_id=Os02g0599151;Oryzabase Gene Symbol Synonym(s)=OsPP2C17%2C PP2C17%2C OsPP27;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C17%2C protein phosphatase 2C 17%2C protein phosphatase 27;Note=Probable protein phosphatase 2C 17.;Transcript_evidence=Q6K1U0 (UniProt);ORF_evidence=Q6K1U0 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);Oryzabase=17893;TENOR=Os02t0599151-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	23386353	23386408	.	+	0	Parent=Os02t0599151-00
Chr02	irgsp1_rep	CDS	23386777	23386903	.	+	1	Parent=Os02t0599151-00
Chr02	irgsp1_rep	CDS	23387025	23387094	.	+	0	Parent=Os02t0599151-00
Chr02	irgsp1_rep	CDS	23387604	23387709	.	+	2	Parent=Os02t0599151-00
Chr02	irgsp1_rep	CDS	23387792	23387903	.	+	1	Parent=Os02t0599151-00
Chr02	irgsp1_rep	CDS	23388399	23388521	.	+	0	Parent=Os02t0599151-00
Chr02	irgsp1_rep	CDS	23388624	23388783	.	+	0	Parent=Os02t0599151-00
Chr02	irgsp1_rep	CDS	23388907	23388983	.	+	2	Parent=Os02t0599151-00
Chr02	irgsp1_rep	CDS	23389081	23389133	.	+	0	Parent=Os02t0599151-00
Chr02	irgsp1_rep	CDS	23389307	23389361	.	+	1	Parent=Os02t0599151-00
Chr02	irgsp1_rep	CDS	23389656	23390290	.	+	0	Parent=Os02t0599151-00
Chr02	irgsp1_rep	CDS	23391019	23391340	.	+	1	Parent=Os02t0599151-00
Chr02	irgsp1_rep	CDS	23391445	23391753	.	+	0	Parent=Os02t0599151-00
Chr02	irgsp1_rep	mRNA	23402560	23404718	.	+	.	ID=Os02t0599200-01;Name=Os02t0599200-01;Locus_id=Os02g0599200;Oryzabase Gene Symbol Synonym(s)=OsPP2C18%2C PP2C18%2C OsPP28;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C18%2C protein phosphatase 2C 18%2C protein phosphatase 28;Note=Protein phosphatase 2C-like domain containing protein.;Transcript_evidence=AK119492 (DDBJ%2C Best hit);ORF_evidence=A3A8Q4 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=001-134-D06;Oryzabase=17894;TENOR=Os02t0599200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	23402560	23402637	.	+	0	Parent=Os02t0599200-01
Chr02	irgsp1_rep	CDS	23402724	23402776	.	+	0	Parent=Os02t0599200-01
Chr02	irgsp1_rep	CDS	23402943	23402994	.	+	1	Parent=Os02t0599200-01
Chr02	irgsp1_rep	CDS	23403290	23404492	.	+	0	Parent=Os02t0599200-01
Chr02	irgsp1_rep	three_prime_UTR	23404493	23404718	.	+	.	Parent=Os02t0599200-01
Chr02	irgsp1_rep	mRNA	23416055	23416778	.	+	.	ID=Os02t0599400-01;Name=Os02t0599400-01;Locus_id=Os02g0599400;Note=Conserved hypothetical protein.;Transcript_evidence=AK111074 (DDBJ%2C Best hit);ORF_evidence=A3A8Q6 (UniProt);NIAS_FLcDNA=002-175-E09;TENOR=Os02t0599400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	23416055	23416055	.	+	.	Parent=Os02t0599400-01
Chr02	irgsp1_rep	CDS	23416056	23416610	.	+	0	Parent=Os02t0599400-01
Chr02	irgsp1_rep	three_prime_UTR	23416611	23416778	.	+	.	Parent=Os02t0599400-01
Chr02	irgsp1_rep	mRNA	23417599	23420491	.	-	.	ID=Os02t0599500-00;Name=Os02t0599500-00;Locus_id=Os02g0599500;Note=Similar to Iron-stress related protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B4FBU5 (UniProt);TENOR=Os02t0599500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	23420433	23420491	.	-	0	Parent=Os02t0599500-00
Chr02	irgsp1_rep	CDS	23419080	23419267	.	-	1	Parent=Os02t0599500-00
Chr02	irgsp1_rep	CDS	23418213	23418263	.	-	2	Parent=Os02t0599500-00
Chr02	irgsp1_rep	CDS	23417766	23417836	.	-	2	Parent=Os02t0599500-00
Chr02	irgsp1_rep	CDS	23417599	23417676	.	-	0	Parent=Os02t0599500-00
Chr02	irgsp1_rep	mRNA	23432540	23442530	.	+	.	ID=Os02t0599700-01;Name=Os02t0599700-01;Locus_id=Os02g0599700;Oryzabase Gene Symbol Synonym(s)=OsPP2C19%2C PP2C19%2C OsPP29;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C19%2C protein phosphatase 2C 19%2C protein phosphatase 29;Note=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site domain containing protein.;Transcript_evidence=AK065211 (DDBJ%2C Best hit);ORF_evidence=B9F0X0 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J013002F23;Oryzabase=17895;TENOR=Os02t0599700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	23432540	23432719	.	+	.	Parent=Os02t0599700-01
Chr02	irgsp1_rep	five_prime_UTR	23433362	23433452	.	+	.	Parent=Os02t0599700-01
Chr02	irgsp1_rep	five_prime_UTR	23433553	23433603	.	+	.	Parent=Os02t0599700-01
Chr02	irgsp1_rep	five_prime_UTR	23433748	23433913	.	+	.	Parent=Os02t0599700-01
Chr02	irgsp1_rep	five_prime_UTR	23433997	23434183	.	+	.	Parent=Os02t0599700-01
Chr02	irgsp1_rep	five_prime_UTR	23434628	23434717	.	+	.	Parent=Os02t0599700-01
Chr02	irgsp1_rep	five_prime_UTR	23434948	23435069	.	+	.	Parent=Os02t0599700-01
Chr02	irgsp1_rep	five_prime_UTR	23435505	23435536	.	+	.	Parent=Os02t0599700-01
Chr02	irgsp1_rep	CDS	23435537	23435599	.	+	0	Parent=Os02t0599700-01
Chr02	irgsp1_rep	CDS	23436208	23436385	.	+	0	Parent=Os02t0599700-01
Chr02	irgsp1_rep	CDS	23438950	23439077	.	+	2	Parent=Os02t0599700-01
Chr02	irgsp1_rep	CDS	23439199	23439265	.	+	0	Parent=Os02t0599700-01
Chr02	irgsp1_rep	CDS	23439774	23439879	.	+	2	Parent=Os02t0599700-01
Chr02	irgsp1_rep	CDS	23439972	23440098	.	+	1	Parent=Os02t0599700-01
Chr02	irgsp1_rep	three_prime_UTR	23440099	23440691	.	+	.	Parent=Os02t0599700-01
Chr02	irgsp1_rep	three_prime_UTR	23440794	23440971	.	+	.	Parent=Os02t0599700-01
Chr02	irgsp1_rep	three_prime_UTR	23441078	23441154	.	+	.	Parent=Os02t0599700-01
Chr02	irgsp1_rep	three_prime_UTR	23441247	23441299	.	+	.	Parent=Os02t0599700-01
Chr02	irgsp1_rep	three_prime_UTR	23441454	23441505	.	+	.	Parent=Os02t0599700-01
Chr02	irgsp1_rep	three_prime_UTR	23441877	23442530	.	+	.	Parent=Os02t0599700-01
Chr02	irgsp1_rep	mRNA	23451715	23454685	.	+	.	ID=Os02t0600000-01;Name=Os02t0600000-01;Locus_id=Os02g0600000;Note=Conserved hypothetical protein.;Transcript_evidence=AK068044 (DDBJ%2C Best hit);ORF_evidence=B8AF08 (UniProt);NIAS_FLcDNA=J013132L02;TENOR=Os02t0600000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	23451715	23452024	.	+	.	Parent=Os02t0600000-01
Chr02	irgsp1_rep	five_prime_UTR	23452769	23452859	.	+	.	Parent=Os02t0600000-01
Chr02	irgsp1_rep	five_prime_UTR	23453255	23453353	.	+	.	Parent=Os02t0600000-01
Chr02	irgsp1_rep	five_prime_UTR	23453439	23453459	.	+	.	Parent=Os02t0600000-01
Chr02	irgsp1_rep	CDS	23453460	23453630	.	+	0	Parent=Os02t0600000-01
Chr02	irgsp1_rep	three_prime_UTR	23453631	23453639	.	+	.	Parent=Os02t0600000-01
Chr02	irgsp1_rep	three_prime_UTR	23453932	23454101	.	+	.	Parent=Os02t0600000-01
Chr02	irgsp1_rep	three_prime_UTR	23454455	23454685	.	+	.	Parent=Os02t0600000-01
Chr02	irgsp1_rep	mRNA	23456804	23460491	.	+	.	ID=Os02t0600033-00;Name=Os02t0600033-00;Locus_id=Os02g0600033;Oryzabase Gene Symbol Synonym(s)=OsPP2C20%2C PP2C20%2C OsPP30;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C20%2C protein phosphatase 2C 20%2C protein phosphatase 30;Note=cDNA clone:J013002F23%2C full insert sequence.;Transcript_evidence=Q6K5I0 (UniProt);ORF_evidence=B7EAM1 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);Oryzabase=17896;TENOR=Os02t0600033-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	23456804	23456914	.	+	0	Parent=Os02t0600033-00
Chr02	irgsp1_rep	CDS	23457036	23457102	.	+	0	Parent=Os02t0600033-00
Chr02	irgsp1_rep	CDS	23457622	23457727	.	+	2	Parent=Os02t0600033-00
Chr02	irgsp1_rep	CDS	23457820	23457937	.	+	1	Parent=Os02t0600033-00
Chr02	irgsp1_rep	CDS	23458438	23458557	.	+	0	Parent=Os02t0600033-00
Chr02	irgsp1_rep	CDS	23458660	23458837	.	+	0	Parent=Os02t0600033-00
Chr02	irgsp1_rep	CDS	23458945	23459021	.	+	2	Parent=Os02t0600033-00
Chr02	irgsp1_rep	CDS	23459114	23459166	.	+	0	Parent=Os02t0600033-00
Chr02	irgsp1_rep	CDS	23459321	23459372	.	+	1	Parent=Os02t0600033-00
Chr02	irgsp1_rep	CDS	23459744	23460244	.	+	0	Parent=Os02t0600033-00
Chr02	irgsp1_rep	CDS	23460468	23460491	.	+	0	Parent=Os02t0600033-00
Chr02	irgsp1_rep	mRNA	23455291	23460627	.	-	.	ID=Os02t0600066-01;Name=Os02t0600066-01;Locus_id=Os02g0600066;Note=Hypothetical gene.;Transcript_evidence=AK242836 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090069F13;TENOR=Os02t0600066-01;KEGG=Os02t0600066-01
Chr02	irgsp1_rep	five_prime_UTR	23460104	23460627	.	-	.	Parent=Os02t0600066-01
Chr02	irgsp1_rep	CDS	23459744	23460103	.	-	0	Parent=Os02t0600066-01
Chr02	irgsp1_rep	CDS	23459321	23459372	.	-	0	Parent=Os02t0600066-01
Chr02	irgsp1_rep	CDS	23459114	23459166	.	-	2	Parent=Os02t0600066-01
Chr02	irgsp1_rep	CDS	23458974	23459021	.	-	0	Parent=Os02t0600066-01
Chr02	irgsp1_rep	three_prime_UTR	23458945	23458973	.	-	.	Parent=Os02t0600066-01
Chr02	irgsp1_rep	three_prime_UTR	23458660	23458837	.	-	.	Parent=Os02t0600066-01
Chr02	irgsp1_rep	three_prime_UTR	23458438	23458557	.	-	.	Parent=Os02t0600066-01
Chr02	irgsp1_rep	three_prime_UTR	23458017	23458265	.	-	.	Parent=Os02t0600066-01
Chr02	irgsp1_rep	three_prime_UTR	23457820	23457937	.	-	.	Parent=Os02t0600066-01
Chr02	irgsp1_rep	three_prime_UTR	23457622	23457727	.	-	.	Parent=Os02t0600066-01
Chr02	irgsp1_rep	three_prime_UTR	23457036	23457102	.	-	.	Parent=Os02t0600066-01
Chr02	irgsp1_rep	three_prime_UTR	23455291	23456914	.	-	.	Parent=Os02t0600066-01
Chr02	irgsp1_rep	mRNA	23461505	23465753	.	+	.	ID=Os02t0600100-01;Name=Os02t0600100-01;Locus_id=Os02g0600100;Note=Similar to 26S proteasome subunit RPN7.;Transcript_evidence=AK071215 (DDBJ%2C Best hit);ORF_evidence=NP_001148687.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Proteasome component (PCI) domain (IPR000717),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),26S proteasome%2C regulatory subunit Rpn7 (IPR019585);NIAS_FLcDNA=J023084I15;Expression=AK071215;TENOR=Os02t0600100-01;KEGG=Os02t0600100-01
Chr02	irgsp1_rep	five_prime_UTR	23461505	23461536	.	+	.	Parent=Os02t0600100-01
Chr02	irgsp1_rep	CDS	23461537	23461793	.	+	0	Parent=Os02t0600100-01
Chr02	irgsp1_rep	CDS	23464222	23464312	.	+	1	Parent=Os02t0600100-01
Chr02	irgsp1_rep	CDS	23464397	23464542	.	+	0	Parent=Os02t0600100-01
Chr02	irgsp1_rep	CDS	23464636	23464855	.	+	1	Parent=Os02t0600100-01
Chr02	irgsp1_rep	CDS	23464921	23465029	.	+	0	Parent=Os02t0600100-01
Chr02	irgsp1_rep	CDS	23465125	23465293	.	+	2	Parent=Os02t0600100-01
Chr02	irgsp1_rep	CDS	23465408	23465582	.	+	1	Parent=Os02t0600100-01
Chr02	irgsp1_rep	three_prime_UTR	23465583	23465753	.	+	.	Parent=Os02t0600100-01
Chr02	irgsp1_rep	mRNA	23465969	23468038	.	-	.	ID=Os02t0600200-01;Name=Os02t0600200-01;Locus_id=Os02g0600200;Note=IQ calmodulin-binding region domain containing protein.;Transcript_evidence=AK066974 (DDBJ%2C Best hit);ORF_evidence=Q9FXD5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);NIAS_FLcDNA=J013089P10;Expression=AK066974;TENOR=Os02t0600200-01;KEGG=Os02t0600200-01
Chr02	irgsp1_rep	five_prime_UTR	23467969	23468038	.	-	.	Parent=Os02t0600200-01
Chr02	irgsp1_rep	CDS	23467669	23467968	.	-	0	Parent=Os02t0600200-01
Chr02	irgsp1_rep	CDS	23467415	23467552	.	-	0	Parent=Os02t0600200-01
Chr02	irgsp1_rep	CDS	23467216	23467302	.	-	0	Parent=Os02t0600200-01
Chr02	irgsp1_rep	CDS	23467071	23467118	.	-	0	Parent=Os02t0600200-01
Chr02	irgsp1_rep	CDS	23466506	23466719	.	-	0	Parent=Os02t0600200-01
Chr02	irgsp1_rep	CDS	23466349	23466362	.	-	2	Parent=Os02t0600200-01
Chr02	irgsp1_rep	three_prime_UTR	23465969	23466348	.	-	.	Parent=Os02t0600200-01
Chr02	irgsp1_rep	mRNA	23466229	23467119	.	-	.	ID=Os02t0600200-02;Name=Os02t0600200-02;Locus_id=Os02g0600200;Note=Similar to predicted protein.;Transcript_evidence=AK058978 (DDBJ%2C Best hit);ORF_evidence=B9FYW1 (UniProt);NIAS_FLcDNA=001-020-D08;Expression=AK058978;TENOR=Os02t0600200-02;KEGG=Os02t0600200-02
Chr02	irgsp1_rep	five_prime_UTR	23467119	23467119	.	-	.	Parent=Os02t0600200-02
Chr02	irgsp1_rep	CDS	23467071	23467118	.	-	0	Parent=Os02t0600200-02
Chr02	irgsp1_rep	CDS	23466506	23466719	.	-	0	Parent=Os02t0600200-02
Chr02	irgsp1_rep	CDS	23466349	23466362	.	-	2	Parent=Os02t0600200-02
Chr02	irgsp1_rep	three_prime_UTR	23466229	23466348	.	-	.	Parent=Os02t0600200-02
Chr02	irgsp1_rep	mRNA	23480321	23486812	.	+	.	ID=Os02t0600400-01;Name=Os02t0600400-01;Locus_id=Os02g0600400;Oryzabase Gene Symbol Synonym(s)=OsG6PDH1;Oryzabase Gene Name Synonym(s)=d-glucose 6-phosphate dehydrogenase 1;Note=Similar to Glucose-6-phosphate dehydrogenase.;Transcript_evidence=AK073697 (DDBJ%2C Best hit);ORF_evidence=B8AF07 (UniProt);GO=Biological Process: glucose metabolic process (GO:0006006),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: glucose-6-phosphate dehydrogenase activity (GO:0004345),Molecular Function: NADP binding (GO:0050661);InterPro=Glucose-6-phosphate dehydrogenase (IPR001282),NAD(P)-binding domain (IPR016040),Glucose-6-phosphate dehydrogenase%2C active site (IPR019796),Glucose-6-phosphate dehydrogenase%2C NAD-binding (IPR022674),Glucose-6-phosphate dehydrogenase%2C C-terminal (IPR022675);NIAS_FLcDNA=J033061P12;Oryzabase=14994;Expression=AK073697;TENOR=Os02t0600400-01;KEGG=Os02t0600400-01 (EC:1.1.1.49)
Chr02	irgsp1_rep	five_prime_UTR	23480321	23480456	.	+	.	Parent=Os02t0600400-01
Chr02	irgsp1_rep	five_prime_UTR	23481340	23481375	.	+	.	Parent=Os02t0600400-01
Chr02	irgsp1_rep	CDS	23481376	23481558	.	+	0	Parent=Os02t0600400-01
Chr02	irgsp1_rep	CDS	23481807	23481892	.	+	0	Parent=Os02t0600400-01
Chr02	irgsp1_rep	CDS	23482049	23482097	.	+	1	Parent=Os02t0600400-01
Chr02	irgsp1_rep	CDS	23482167	23482353	.	+	0	Parent=Os02t0600400-01
Chr02	irgsp1_rep	CDS	23482821	23482978	.	+	2	Parent=Os02t0600400-01
Chr02	irgsp1_rep	CDS	23483054	23483122	.	+	0	Parent=Os02t0600400-01
Chr02	irgsp1_rep	CDS	23483299	23483357	.	+	0	Parent=Os02t0600400-01
Chr02	irgsp1_rep	CDS	23483747	23483783	.	+	1	Parent=Os02t0600400-01
Chr02	irgsp1_rep	CDS	23484100	23484171	.	+	0	Parent=Os02t0600400-01
Chr02	irgsp1_rep	CDS	23484301	23484448	.	+	0	Parent=Os02t0600400-01
Chr02	irgsp1_rep	CDS	23484731	23484826	.	+	2	Parent=Os02t0600400-01
Chr02	irgsp1_rep	CDS	23485718	23485788	.	+	2	Parent=Os02t0600400-01
Chr02	irgsp1_rep	CDS	23485911	23486026	.	+	0	Parent=Os02t0600400-01
Chr02	irgsp1_rep	CDS	23486221	23486266	.	+	1	Parent=Os02t0600400-01
Chr02	irgsp1_rep	CDS	23486354	23486530	.	+	0	Parent=Os02t0600400-01
Chr02	irgsp1_rep	three_prime_UTR	23486531	23486812	.	+	.	Parent=Os02t0600400-01
Chr02	irgsp1_rep	mRNA	23495654	23496309	.	-	.	ID=Os02t0600650-01;Name=Os02t0600650-01;Locus_id=Os02g0600650;Note=Conserved hypothetical protein.;Transcript_evidence=AK242675 (DDBJ%2C Best hit);ORF_evidence=NP_001173063.1 (RefSeq);NIAS_FLcDNA=J090031G02;TENOR=Os02t0600650-01;KEGG=Os02t0600650-01
Chr02	irgsp1_rep	five_prime_UTR	23496215	23496309	.	-	.	Parent=Os02t0600650-01
Chr02	irgsp1_rep	CDS	23495672	23496214	.	-	0	Parent=Os02t0600650-01
Chr02	irgsp1_rep	three_prime_UTR	23495654	23495671	.	-	.	Parent=Os02t0600650-01
Chr02	irgsp1_rep	mRNA	23513097	23513707	.	+	.	ID=Os02t0601000-01;Name=Os02t0601000-01;Locus_id=Os02g0601000;Note=Conserved hypothetical protein.;Transcript_evidence=AK111034 (DDBJ%2C Best hit);ORF_evidence=A2X6V4 (UniProt);NIAS_FLcDNA=002-174-H12;Expression=AK111034;TENOR=Os02t0601000-01;KEGG=Os02t0601000-01
Chr02	irgsp1_rep	five_prime_UTR	23513097	23513151	.	+	.	Parent=Os02t0601000-01
Chr02	irgsp1_rep	CDS	23513152	23513418	.	+	0	Parent=Os02t0601000-01
Chr02	irgsp1_rep	three_prime_UTR	23513419	23513707	.	+	.	Parent=Os02t0601000-01
Chr02	irgsp1_rep	mRNA	23514645	23515236	.	-	.	ID=Os02t0601100-01;Name=Os02t0601100-01;Locus_id=Os02g0601100;CGSNL Gene Symbol=ISC43;CGSNL Gene Name=IRON-SULFUR CLUSTER PROTEIN 43;Oryzabase Gene Symbol Synonym(s)=OsISC43;Oryzabase Gene Name Synonym(s)=Iron-sulfur cluster protein 43;Note=Similar to Nucleotide-binding protein.;Transcript_evidence=AK120475 (DDBJ%2C Best hit);ORF_evidence=NP_001149342.1 (RefSeq);NIAS_FLcDNA=J013111D08;Oryzabase=13445;Expression=AK120475;TENOR=Os02t0601100-01;KEGG=Os02t0601100-01
Chr02	irgsp1_rep	CDS	23514880	23515236	.	-	0	Parent=Os02t0601100-01
Chr02	irgsp1_rep	three_prime_UTR	23514645	23514879	.	-	.	Parent=Os02t0601100-01
Chr02	irgsp1_rep	mRNA	23527139	23530459	.	+	.	ID=Os02t0601300-01;Name=Os02t0601300-01;Locus_id=Os02g0601300;Oryzabase Gene Symbol Synonym(s)=OsGapC1;Oryzabase Gene Name Synonym(s)=glyceraldehydephosphate dehydrogenase%2C glyceraldehyde-3-phosphate dehydrogenase%2C cytosolic GAPDH1%2C cytosolic glyceraldehyde-3-phosphate dehydrogenase 1;Note=Similar to Glyceraldehyde-3-phosphate dehydrogenase%2C cytosolic 3 (EC 1.2.1.12).;Transcript_evidence=AK062215 (DDBJ%2C Best hit),AK099086 (DDBJ%2C Best hit);ORF_evidence=A1YR13 (UniProt);GO=Biological Process: glucose metabolic process (GO:0006006),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620),Molecular Function: NADP binding (GO:0050661),Molecular Function: NAD binding (GO:0051287);InterPro=Glyceraldehyde-3-phosphate dehydrogenase%2C type I (IPR006424),NAD(P)-binding domain (IPR016040),Glyceraldehyde 3-phosphate dehydrogenase%2C NAD(P) binding domain (IPR020828),Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain (IPR020829),Glyceraldehyde 3-phosphate dehydrogenase%2C active site (IPR020830),Glyceraldehyde/Erythrose phosphate dehydrogenase family (IPR020831);NIAS_FLcDNA=001-047-A09,J023009G10;Oryzabase=14450;Expression=AK062215;TENOR=Os02t0601300-01;KEGG=Os02t0601300-01 (EC:1.2.1.12)
Chr02	irgsp1_rep	five_prime_UTR	23527139	23527372	.	+	.	Parent=Os02t0601300-01
Chr02	irgsp1_rep	CDS	23527373	23527376	.	+	0	Parent=Os02t0601300-01
Chr02	irgsp1_rep	CDS	23527497	23527520	.	+	2	Parent=Os02t0601300-01
Chr02	irgsp1_rep	CDS	23527618	23527718	.	+	2	Parent=Os02t0601300-01
Chr02	irgsp1_rep	CDS	23528302	23528417	.	+	0	Parent=Os02t0601300-01
Chr02	irgsp1_rep	CDS	23528504	23528603	.	+	1	Parent=Os02t0601300-01
Chr02	irgsp1_rep	CDS	23528676	23528822	.	+	0	Parent=Os02t0601300-01
Chr02	irgsp1_rep	CDS	23528910	23528970	.	+	0	Parent=Os02t0601300-01
Chr02	irgsp1_rep	CDS	23529076	23529173	.	+	2	Parent=Os02t0601300-01
Chr02	irgsp1_rep	CDS	23529550	23529692	.	+	0	Parent=Os02t0601300-01
Chr02	irgsp1_rep	CDS	23529835	23529918	.	+	1	Parent=Os02t0601300-01
Chr02	irgsp1_rep	CDS	23530030	23530119	.	+	1	Parent=Os02t0601300-01
Chr02	irgsp1_rep	CDS	23530206	23530251	.	+	1	Parent=Os02t0601300-01
Chr02	irgsp1_rep	three_prime_UTR	23530252	23530459	.	+	.	Parent=Os02t0601300-01
Chr02	irgsp1_rep	mRNA	23528508	23530119	.	-	.	ID=Os02t0601350-00;Name=Os02t0601350-00;Locus_id=Os02g0601350;Note=Hypothetical protein.;Transcript_evidence=BT016463 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0601350-00
Chr02	irgsp1_rep	five_prime_UTR	23530017	23530119	.	-	.	Parent=Os02t0601350-00
Chr02	irgsp1_rep	five_prime_UTR	23529825	23529900	.	-	.	Parent=Os02t0601350-00
Chr02	irgsp1_rep	five_prime_UTR	23529536	23529682	.	-	.	Parent=Os02t0601350-00
Chr02	irgsp1_rep	five_prime_UTR	23529074	23529159	.	-	.	Parent=Os02t0601350-00
Chr02	irgsp1_rep	five_prime_UTR	23528961	23528967	.	-	.	Parent=Os02t0601350-00
Chr02	irgsp1_rep	CDS	23528922	23528960	.	-	0	Parent=Os02t0601350-00
Chr02	irgsp1_rep	CDS	23528674	23528831	.	-	0	Parent=Os02t0601350-00
Chr02	irgsp1_rep	CDS	23528508	23528601	.	-	1	Parent=Os02t0601350-00
Chr02	irgsp1_rep	mRNA	23535119	23536974	.	-	.	ID=Os02t0601500-01;Name=Os02t0601500-01;Locus_id=Os02g0601500;CGSNL Gene Symbol=CYP71X14;CGSNL Gene Name=CYTOCHROME P450 71X14;Oryzabase Gene Symbol Synonym(s)=OsCYP71X14;Oryzabase Gene Name Synonym(s)=CytoChrome P450 71X14;Note=CytoChrome P450 family protein.;Transcript_evidence=AK241950 (DDBJ%2C Best hit);ORF_evidence=Q6K5G6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);NIAS_FLcDNA=J075091F02;Oryzabase=21831;TENOR=Os02t0601500-01;KEGG=Os02t0601500-01
Chr02	irgsp1_rep	five_prime_UTR	23536926	23536974	.	-	.	Parent=Os02t0601500-01
Chr02	irgsp1_rep	CDS	23535963	23536925	.	-	0	Parent=Os02t0601500-01
Chr02	irgsp1_rep	three_prime_UTR	23535119	23535962	.	-	.	Parent=Os02t0601500-01
Chr02	irgsp1_rep	mRNA	23538347	23540226	.	+	.	ID=Os02t0601600-01;Name=Os02t0601600-01;Locus_id=Os02g0601600;Note=Hypothetical conserved gene.;Transcript_evidence=AK241112 (DDBJ%2C Best hit);ORF_evidence=A2X6W6 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J065091K02;TENOR=Os02t0601600-01;KEGG=Os02t0601600-01
Chr02	irgsp1_rep	five_prime_UTR	23538347	23538453	.	+	.	Parent=Os02t0601600-01
Chr02	irgsp1_rep	five_prime_UTR	23538583	23538717	.	+	.	Parent=Os02t0601600-01
Chr02	irgsp1_rep	CDS	23538718	23540220	.	+	0	Parent=Os02t0601600-01
Chr02	irgsp1_rep	three_prime_UTR	23540221	23540226	.	+	.	Parent=Os02t0601600-01
Chr02	irgsp1_rep	mRNA	23544805	23549077	.	+	.	ID=Os02t0601700-01;Name=Os02t0601700-01;Locus_id=Os02g0601700;Note=Ankyrin repeat containing protein.;Transcript_evidence=AK100041 (DDBJ%2C Best hit);ORF_evidence=D5G0H2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J013151O17;Expression=AK100041;TENOR=Os02t0601700-01;KEGG=Os02t0601700-01
Chr02	irgsp1_rep	five_prime_UTR	23544805	23545238	.	+	.	Parent=Os02t0601700-01
Chr02	irgsp1_rep	five_prime_UTR	23545702	23545816	.	+	.	Parent=Os02t0601700-01
Chr02	irgsp1_rep	CDS	23545817	23546569	.	+	0	Parent=Os02t0601700-01
Chr02	irgsp1_rep	CDS	23547431	23548831	.	+	0	Parent=Os02t0601700-01
Chr02	irgsp1_rep	three_prime_UTR	23548832	23549077	.	+	.	Parent=Os02t0601700-01
Chr02	irgsp1_rep	mRNA	23545845	23548377	.	-	.	ID=Os02t0601750-00;Name=Os02t0601750-00;Locus_id=Os02g0601750;Note=Hypothetical protein.;Transcript_evidence=tplb0059e11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0601750-00
Chr02	irgsp1_rep	five_prime_UTR	23547422	23548377	.	-	.	Parent=Os02t0601750-00
Chr02	irgsp1_rep	five_prime_UTR	23546543	23546563	.	-	.	Parent=Os02t0601750-00
Chr02	irgsp1_rep	CDS	23545845	23546542	.	-	0	Parent=Os02t0601750-00
Chr02	irgsp1_rep	mRNA	23549175	23554380	.	-	.	ID=Os02t0601800-01;Name=Os02t0601800-01;Locus_id=Os02g0601800;Oryzabase Gene Name Synonym(s)=kinase-like protein;Note=Bromodomain containing protein.;Transcript_evidence=AK101873 (DDBJ%2C Best hit);ORF_evidence=Q9AV92 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Bromodomain (IPR001487);NIAS_FLcDNA=J033070G06;Oryzabase=13666;Expression=AK101873;TENOR=Os02t0601800-01;KEGG=Os02t0601800-01
Chr02	irgsp1_rep	five_prime_UTR	23554316	23554380	.	-	.	Parent=Os02t0601800-01
Chr02	irgsp1_rep	five_prime_UTR	23553999	23554040	.	-	.	Parent=Os02t0601800-01
Chr02	irgsp1_rep	five_prime_UTR	23553641	23553657	.	-	.	Parent=Os02t0601800-01
Chr02	irgsp1_rep	CDS	23552371	23553640	.	-	0	Parent=Os02t0601800-01
Chr02	irgsp1_rep	CDS	23552155	23552292	.	-	2	Parent=Os02t0601800-01
Chr02	irgsp1_rep	CDS	23551494	23551558	.	-	2	Parent=Os02t0601800-01
Chr02	irgsp1_rep	CDS	23551079	23551148	.	-	0	Parent=Os02t0601800-01
Chr02	irgsp1_rep	CDS	23550706	23550765	.	-	2	Parent=Os02t0601800-01
Chr02	irgsp1_rep	CDS	23550495	23550607	.	-	2	Parent=Os02t0601800-01
Chr02	irgsp1_rep	CDS	23550366	23550408	.	-	0	Parent=Os02t0601800-01
Chr02	irgsp1_rep	CDS	23550161	23550282	.	-	2	Parent=Os02t0601800-01
Chr02	irgsp1_rep	CDS	23549819	23550082	.	-	0	Parent=Os02t0601800-01
Chr02	irgsp1_rep	three_prime_UTR	23549175	23549818	.	-	.	Parent=Os02t0601800-01
Chr02	irgsp1_rep	mRNA	23553040	23554380	.	-	.	ID=Os02t0601800-02;Name=Os02t0601800-02;Locus_id=Os02g0601800;Oryzabase Gene Name Synonym(s)=kinase-like protein;Note=Similar to Kinase-like protein.;Transcript_evidence=AK106801 (DDBJ%2C Best hit);ORF_evidence=Q9AV92 (UniProt);NIAS_FLcDNA=002-116-B11;Oryzabase=13666;TENOR=Os02t0601800-02
Chr02	irgsp1_rep	five_prime_UTR	23553999	23554380	.	-	.	Parent=Os02t0601800-02
Chr02	irgsp1_rep	five_prime_UTR	23553641	23553657	.	-	.	Parent=Os02t0601800-02
Chr02	irgsp1_rep	CDS	23553040	23553640	.	-	0	Parent=Os02t0601800-02
Chr02	irgsp1_rep	mRNA	23549175	23554380	.	-	.	ID=Os02t0601800-03;Name=Os02t0601800-03;Locus_id=Os02g0601800;Oryzabase Gene Name Synonym(s)=kinase-like protein;Note=Bromodomain containing protein.;Transcript_evidence=AK121891 (DDBJ%2C Best hit),AK099539 (DDBJ%2C Best hit);ORF_evidence=Q9AV92 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Bromodomain (IPR001487);NIAS_FLcDNA=J033105C13,J013032G15;Oryzabase=13666;Expression=AK121891;TENOR=Os02t0601800-03;KEGG=Os02t0601800-03
Chr02	irgsp1_rep	five_prime_UTR	23553999	23554380	.	-	.	Parent=Os02t0601800-03
Chr02	irgsp1_rep	five_prime_UTR	23553641	23553657	.	-	.	Parent=Os02t0601800-03
Chr02	irgsp1_rep	CDS	23552371	23553640	.	-	0	Parent=Os02t0601800-03
Chr02	irgsp1_rep	CDS	23552155	23552292	.	-	2	Parent=Os02t0601800-03
Chr02	irgsp1_rep	CDS	23551494	23551558	.	-	2	Parent=Os02t0601800-03
Chr02	irgsp1_rep	CDS	23551079	23551148	.	-	0	Parent=Os02t0601800-03
Chr02	irgsp1_rep	CDS	23550706	23550765	.	-	2	Parent=Os02t0601800-03
Chr02	irgsp1_rep	CDS	23550495	23550607	.	-	2	Parent=Os02t0601800-03
Chr02	irgsp1_rep	CDS	23550366	23550408	.	-	0	Parent=Os02t0601800-03
Chr02	irgsp1_rep	CDS	23550161	23550282	.	-	2	Parent=Os02t0601800-03
Chr02	irgsp1_rep	CDS	23549819	23550082	.	-	0	Parent=Os02t0601800-03
Chr02	irgsp1_rep	three_prime_UTR	23549175	23549818	.	-	.	Parent=Os02t0601800-03
Chr02	irgsp1_rep	mRNA	23551874	23554380	.	-	.	ID=Os02t0601800-04;Name=Os02t0601800-04;Locus_id=Os02g0601800;Oryzabase Gene Name Synonym(s)=kinase-like protein;Note=Similar to Kinase-like protein.;Transcript_evidence=AK121758 (DDBJ%2C Best hit);ORF_evidence=Q9AV92 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Bromodomain (IPR001487);NIAS_FLcDNA=J033088P12;Oryzabase=13666;Expression=AK121758;TENOR=Os02t0601800-04;KEGG=Os02t0601800-04 (EC:2.3.1.48)
Chr02	irgsp1_rep	five_prime_UTR	23553999	23554380	.	-	.	Parent=Os02t0601800-04
Chr02	irgsp1_rep	five_prime_UTR	23553641	23553657	.	-	.	Parent=Os02t0601800-04
Chr02	irgsp1_rep	CDS	23552371	23553640	.	-	0	Parent=Os02t0601800-04
Chr02	irgsp1_rep	CDS	23552120	23552292	.	-	2	Parent=Os02t0601800-04
Chr02	irgsp1_rep	three_prime_UTR	23551874	23552119	.	-	.	Parent=Os02t0601800-04
Chr02	irgsp1_rep	mRNA	23559972	23561665	.	+	.	ID=Os02t0602000-01;Name=Os02t0602000-01;Locus_id=Os02g0602000;CGSNL Gene Symbol=REM6.5;CGSNL Gene Name=REMORIN 6.5;Oryzabase Gene Symbol Synonym(s)=OsREM6.5;Oryzabase Gene Name Synonym(s)=Remorin 6.5%2C remorin group 6 member 5;Note=Remorin%2C C-terminal region domain containing protein.;Transcript_evidence=AK103400 (DDBJ%2C Best hit);ORF_evidence=B6SIP6 (UniProt);InterPro=Remorin%2C C-terminal (IPR005516);NIAS_FLcDNA=J033128B04;Oryzabase=20282;Expression=AK103400;TENOR=Os02t0602000-01;KEGG=Os02t0602000-01
Chr02	irgsp1_rep	five_prime_UTR	23559972	23560045	.	+	.	Parent=Os02t0602000-01
Chr02	irgsp1_rep	CDS	23560046	23560755	.	+	0	Parent=Os02t0602000-01
Chr02	irgsp1_rep	CDS	23561208	23561520	.	+	1	Parent=Os02t0602000-01
Chr02	irgsp1_rep	three_prime_UTR	23561521	23561665	.	+	.	Parent=Os02t0602000-01
Chr02	irgsp1_rep	mRNA	23562279	23563089	.	+	.	ID=Os02t0602100-01;Name=Os02t0602100-01;Locus_id=Os02g0602100;Oryzabase Gene Symbol Synonym(s)=OsMSRPK1%2C Orysa%3BCDKG%3B1;Note=Similar to cDNA clone:J013093F08%2C full insert sequence.;Transcript_evidence=AK120479 (DDBJ%2C Best hit);ORF_evidence=B7F3X5 (UniProt);NIAS_FLcDNA=J013111M12;Oryzabase=13069;Expression=AK120479;TENOR=Os02t0602100-01;KEGG=Os02t0602100-01 (EC:2.7.11.22)
Chr02	irgsp1_rep	five_prime_UTR	23562279	23562711	.	+	.	Parent=Os02t0602100-01
Chr02	irgsp1_rep	CDS	23562712	23563089	.	+	0	Parent=Os02t0602100-01
Chr02	irgsp1_rep	mRNA	23562283	23565935	.	+	.	ID=Os02t0602100-02;Name=Os02t0602100-02;Locus_id=Os02g0602100;Oryzabase Gene Symbol Synonym(s)=OsMSRPK1%2C Orysa%3BCDKG%3B1;Note=Similar to PITSLRE serine/threonine-protein kinase CDC2L2 (EC 2.7.1.37) (Galactosyltransferase associated protein kinase p58/GTA) (Cell division cycle 2-like protein kinase 2) (CDK11). Splice isoform SV7.;Transcript_evidence=AK111593 (DDBJ%2C Best hit);ORF_evidence=Q6K5F8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013093F08;Oryzabase=13069;Expression=AK111593;TENOR=Os02t0602100-02;KEGG=Os02t0602100-02 (EC:2.7.1.37%2C EC:2.7.11.22)
Chr02	irgsp1_rep	five_prime_UTR	23562283	23562711	.	+	.	Parent=Os02t0602100-02
Chr02	irgsp1_rep	CDS	23562712	23564126	.	+	0	Parent=Os02t0602100-02
Chr02	irgsp1_rep	CDS	23564220	23564348	.	+	1	Parent=Os02t0602100-02
Chr02	irgsp1_rep	CDS	23564442	23564577	.	+	1	Parent=Os02t0602100-02
Chr02	irgsp1_rep	CDS	23564658	23564746	.	+	0	Parent=Os02t0602100-02
Chr02	irgsp1_rep	CDS	23564843	23564954	.	+	1	Parent=Os02t0602100-02
Chr02	irgsp1_rep	CDS	23565034	23565140	.	+	0	Parent=Os02t0602100-02
Chr02	irgsp1_rep	CDS	23565237	23565330	.	+	1	Parent=Os02t0602100-02
Chr02	irgsp1_rep	three_prime_UTR	23565331	23565935	.	+	.	Parent=Os02t0602100-02
Chr02	irgsp1_rep	mRNA	23562830	23564338	.	-	.	ID=Os02t0602201-00;Name=Os02t0602201-00;Locus_id=Os02g0602201;Note=Hypothetical gene.;Transcript_evidence=BT085088 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0602201-00
Chr02	irgsp1_rep	five_prime_UTR	23564213	23564338	.	-	.	Parent=Os02t0602201-00
Chr02	irgsp1_rep	five_prime_UTR	23563602	23564119	.	-	.	Parent=Os02t0602201-00
Chr02	irgsp1_rep	CDS	23563206	23563601	.	-	0	Parent=Os02t0602201-00
Chr02	irgsp1_rep	three_prime_UTR	23562830	23563205	.	-	.	Parent=Os02t0602201-00
Chr02	irgsp1_rep	mRNA	23572965	23575418	.	+	.	ID=Os02t0602300-01;Name=Os02t0602300-01;Locus_id=Os02g0602300;Note=Similar to Myelin transcription factor 1 (MYT1) (MYTI) (Proteolipid protein binding protein) (PLPB1).;Transcript_evidence=AK065609 (DDBJ%2C Best hit);ORF_evidence=A2X6X2 (UniProt);GO=Biological Process: regulation of signal transduction (GO:0009966),Biological Process: regulation of phosphoprotein phosphatase activity (GO:0043666),Molecular Function: protein phosphatase inhibitor activity (GO:0004864);InterPro=Protein phosphatase inhibitor 2 (IPP-2) (IPR007062);NIAS_FLcDNA=J013033D17;Expression=AK065609;TENOR=Os02t0602300-01;KEGG=Os02t0602300-01
Chr02	irgsp1_rep	five_prime_UTR	23572965	23573694	.	+	.	Parent=Os02t0602300-01
Chr02	irgsp1_rep	CDS	23573695	23573723	.	+	0	Parent=Os02t0602300-01
Chr02	irgsp1_rep	CDS	23573816	23573943	.	+	1	Parent=Os02t0602300-01
Chr02	irgsp1_rep	CDS	23574040	23574321	.	+	2	Parent=Os02t0602300-01
Chr02	irgsp1_rep	CDS	23575125	23575219	.	+	2	Parent=Os02t0602300-01
Chr02	irgsp1_rep	three_prime_UTR	23575220	23575418	.	+	.	Parent=Os02t0602300-01
Chr02	irgsp1_rep	mRNA	23573015	23575487	.	+	.	ID=Os02t0602300-02;Name=Os02t0602300-02;Locus_id=Os02g0602300;Note=Similar to Myelin transcription factor 1 (MYT1) (MYTI) (Proteolipid protein binding protein) (PLPB1).;Transcript_evidence=AK066929 (DDBJ%2C Best hit);ORF_evidence=A2X6X2 (UniProt);GO=Biological Process: regulation of signal transduction (GO:0009966),Biological Process: regulation of phosphoprotein phosphatase activity (GO:0043666),Molecular Function: protein phosphatase inhibitor activity (GO:0004864);InterPro=Protein phosphatase inhibitor 2 (IPP-2) (IPR007062);NIAS_FLcDNA=J013092L08;Expression=AK066929;TENOR=Os02t0602300-02;KEGG=Os02t0602300-02
Chr02	irgsp1_rep	five_prime_UTR	23573015	23573049	.	+	.	Parent=Os02t0602300-02
Chr02	irgsp1_rep	five_prime_UTR	23573665	23573694	.	+	.	Parent=Os02t0602300-02
Chr02	irgsp1_rep	CDS	23573695	23573723	.	+	0	Parent=Os02t0602300-02
Chr02	irgsp1_rep	CDS	23573816	23573943	.	+	1	Parent=Os02t0602300-02
Chr02	irgsp1_rep	CDS	23574040	23574321	.	+	2	Parent=Os02t0602300-02
Chr02	irgsp1_rep	CDS	23575125	23575219	.	+	2	Parent=Os02t0602300-02
Chr02	irgsp1_rep	three_prime_UTR	23575220	23575487	.	+	.	Parent=Os02t0602300-02
Chr02	irgsp1_rep	mRNA	23575780	23578280	.	+	.	ID=Os02t0602400-01;Name=Os02t0602400-01;Locus_id=Os02g0602400;Note=Mitochodrial transcription termination factor-related family protein.;Transcript_evidence=AK069111 (DDBJ%2C Best hit);ORF_evidence=B6TVL7 (UniProt);InterPro=Mitochodrial transcription termination factor-related (IPR003690);NIAS_FLcDNA=J023007P20;Expression=AK069111;TENOR=Os02t0602400-01;KEGG=Os02t0602400-01
Chr02	irgsp1_rep	five_prime_UTR	23575780	23575952	.	+	.	Parent=Os02t0602400-01
Chr02	irgsp1_rep	five_prime_UTR	23576561	23576610	.	+	.	Parent=Os02t0602400-01
Chr02	irgsp1_rep	five_prime_UTR	23576713	23576940	.	+	.	Parent=Os02t0602400-01
Chr02	irgsp1_rep	five_prime_UTR	23577011	23577078	.	+	.	Parent=Os02t0602400-01
Chr02	irgsp1_rep	five_prime_UTR	23577267	23577267	.	+	.	Parent=Os02t0602400-01
Chr02	irgsp1_rep	CDS	23577268	23578083	.	+	0	Parent=Os02t0602400-01
Chr02	irgsp1_rep	three_prime_UTR	23578084	23578280	.	+	.	Parent=Os02t0602400-01
Chr02	irgsp1_rep	mRNA	23577615	23578219	.	+	.	ID=Os02t0602400-02;Name=Os02t0602400-02;Locus_id=Os02g0602400;Note=Hypothetical conserved gene.;Transcript_evidence=AK059178 (DDBJ%2C Best hit);ORF_evidence=B9F0X9 (UniProt);InterPro=Mitochodrial transcription termination factor-related (IPR003690);NIAS_FLcDNA=001-023-F10;Expression=AK059178;TENOR=Os02t0602400-02;KEGG=Os02t0602400-02
Chr02	irgsp1_rep	five_prime_UTR	23577615	23577615	.	+	.	Parent=Os02t0602400-02
Chr02	irgsp1_rep	CDS	23577616	23578083	.	+	0	Parent=Os02t0602400-02
Chr02	irgsp1_rep	three_prime_UTR	23578084	23578219	.	+	.	Parent=Os02t0602400-02
Chr02	irgsp1_rep	mRNA	23578402	23580839	.	-	.	ID=Os02t0602500-01;Name=Os02t0602500-01;Locus_id=Os02g0602500;Note=Similar to Pre-mRNA-splicing factor ISY1.;Transcript_evidence=AK073602 (DDBJ%2C Best hit);ORF_evidence=B6T8I4 (UniProt);InterPro=Isy1-like splicing (IPR009360);NIAS_FLcDNA=J033052I23;TENOR=Os02t0602500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	23580838	23580839	.	-	.	Parent=Os02t0602500-01
Chr02	irgsp1_rep	CDS	23580748	23580837	.	-	0	Parent=Os02t0602500-01
Chr02	irgsp1_rep	CDS	23579761	23580402	.	-	0	Parent=Os02t0602500-01
Chr02	irgsp1_rep	three_prime_UTR	23579753	23579760	.	-	.	Parent=Os02t0602500-01
Chr02	irgsp1_rep	three_prime_UTR	23578402	23578793	.	-	.	Parent=Os02t0602500-01
Chr02	irgsp1_rep	mRNA	23578399	23580823	.	-	.	ID=Os02t0602500-02;Name=Os02t0602500-02;Locus_id=Os02g0602500;Note=Isy1-like splicing family protein.;Transcript_evidence=AK064340 (DDBJ%2C Best hit);ORF_evidence=B6T8I4 (UniProt);InterPro=Isy1-like splicing (IPR009360);NIAS_FLcDNA=002-107-H03;Expression=AK064340;TENOR=Os02t0602500-02;KEGG=Os02t0602500-02
Chr02	irgsp1_rep	five_prime_UTR	23580697	23580823	.	-	.	Parent=Os02t0602500-02
Chr02	irgsp1_rep	CDS	23579761	23580696	.	-	0	Parent=Os02t0602500-02
Chr02	irgsp1_rep	three_prime_UTR	23579753	23579760	.	-	.	Parent=Os02t0602500-02
Chr02	irgsp1_rep	three_prime_UTR	23578399	23578793	.	-	.	Parent=Os02t0602500-02
Chr02	irgsp1_rep	mRNA	23581962	23584956	.	+	.	ID=Os02t0602600-00;Name=Os02t0602600-00;Locus_id=Os02g0602600;Note=RNA recognition motif domain domain containing protein.;Transcript_evidence=AK373290 (DDBJ);ORF_evidence=NP_001047359.2 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);TENOR=Os02t0602600-00
Chr02	irgsp1_rep	CDS	23581962	23583122	.	+	0	Parent=Os02t0602600-00
Chr02	irgsp1_rep	three_prime_UTR	23583123	23583289	.	+	.	Parent=Os02t0602600-00
Chr02	irgsp1_rep	three_prime_UTR	23583741	23584080	.	+	.	Parent=Os02t0602600-00
Chr02	irgsp1_rep	three_prime_UTR	23584173	23584956	.	+	.	Parent=Os02t0602600-00
Chr02	irgsp1_rep	mRNA	23585114	23585305	.	-	.	ID=Os02t0602601-00;Name=Os02t0602601-00;Locus_id=Os02g0602601;Note=Non-protein coding transcript.;Transcript_evidence=CT835443 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os02t0602601-00
Chr02	irgsp1_rep	exon	23585236	23585305	.	-	.	Parent=Os02t0602601-00
Chr02	irgsp1_rep	exon	23585114	23585220	.	-	.	Parent=Os02t0602601-00
Chr02	irgsp1_rep	mRNA	23593919	23595886	.	+	.	ID=Os02t0602700-01;Name=Os02t0602700-01;Locus_id=Os02g0602700;Note=Non-protein coding transcript.;Transcript_evidence=AK064479 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-111-A08;TENOR=Os02t0602700-01
Chr02	irgsp1_rep	exon	23593919	23595886	.	+	.	Parent=Os02t0602700-01
Chr02	irgsp1_rep	mRNA	23597841	23601424	.	+	.	ID=Os02t0602800-01;Name=Os02t0602800-01;Locus_id=Os02g0602800;Note=Got1-like protein family protein.;Transcript_evidence=AK068109 (DDBJ%2C Best hit),AK068016 (DDBJ%2C Best hit);ORF_evidence=B4FF15 (UniProt);GO=Biological Process: vesicle-mediated transport (GO:0016192);InterPro=Vesicle transport protein%2C Got1/SFT2-like (IPR007305);NIAS_FLcDNA=J013130O22,J013131N20;Expression=AK068109;TENOR=Os02t0602800-01;KEGG=Os02t0602800-01
Chr02	irgsp1_rep	five_prime_UTR	23597841	23598026	.	+	.	Parent=Os02t0602800-01
Chr02	irgsp1_rep	five_prime_UTR	23599363	23599412	.	+	.	Parent=Os02t0602800-01
Chr02	irgsp1_rep	CDS	23599413	23599440	.	+	0	Parent=Os02t0602800-01
Chr02	irgsp1_rep	CDS	23600075	23600166	.	+	2	Parent=Os02t0602800-01
Chr02	irgsp1_rep	CDS	23600262	23600342	.	+	0	Parent=Os02t0602800-01
Chr02	irgsp1_rep	CDS	23600841	23600938	.	+	0	Parent=Os02t0602800-01
Chr02	irgsp1_rep	CDS	23601033	23601108	.	+	1	Parent=Os02t0602800-01
Chr02	irgsp1_rep	CDS	23601281	23601313	.	+	0	Parent=Os02t0602800-01
Chr02	irgsp1_rep	three_prime_UTR	23601314	23601424	.	+	.	Parent=Os02t0602800-01
Chr02	irgsp1_rep	mRNA	23605516	23607650	.	+	.	ID=Os02t0602900-01;Name=Os02t0602900-01;Locus_id=Os02g0602900;Note=Conserved hypothetical protein.;Transcript_evidence=AK073954 (DDBJ%2C Best hit);ORF_evidence=A3A8T1 (UniProt);NIAS_FLcDNA=J033075M16;TENOR=Os02t0602900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	23605516	23607077	.	+	.	Parent=Os02t0602900-01
Chr02	irgsp1_rep	CDS	23607078	23607290	.	+	0	Parent=Os02t0602900-01
Chr02	irgsp1_rep	three_prime_UTR	23607291	23607650	.	+	.	Parent=Os02t0602900-01
Chr02	irgsp1_rep	mRNA	23609300	23610643	.	-	.	ID=Os02t0603000-00;Name=Os02t0603000-00;Locus_id=Os02g0603000;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001148148.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),AGC-kinase%2C C-terminal (IPR000961),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os02t0603000-00;KEGG=Os02t0603000-00 (EC:2.7.11.1)
Chr02	irgsp1_rep	CDS	23609300	23610643	.	-	0	Parent=Os02t0603000-00
Chr02	irgsp1_rep	mRNA	23609933	23610724	.	+	.	ID=Os02t0603033-00;Name=Os02t0603033-00;Locus_id=Os02g0603033;Note=Conserved hypothetical protein.;Transcript_evidence=BT087033 (DDBJ);ORF_evidence=NP_001168751.1 (RefSeq);TENOR=Os02t0603033-00
Chr02	irgsp1_rep	CDS	23609933	23610724	.	+	0	Parent=Os02t0603033-00
Chr02	irgsp1_rep	mRNA	23611961	23614515	.	+	.	ID=Os02t0603066-00;Name=Os02t0603066-00;Locus_id=Os02g0603066;Note=Hypothetical protein.;Transcript_evidence=tplb0055l05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0603066-00
Chr02	irgsp1_rep	five_prime_UTR	23611961	23613737	.	+	.	Parent=Os02t0603066-00
Chr02	irgsp1_rep	CDS	23613738	23614515	.	+	0	Parent=Os02t0603066-00
Chr02	irgsp1_rep	mRNA	23612056	23614519	.	-	.	ID=Os02t0603100-01;Name=Os02t0603100-01;Locus_id=Os02g0603100;Note=Similar to fasciated ear2.;Transcript_evidence=AK287597 (DDBJ%2C Best hit);ORF_evidence=Q6K8K0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J065049B08;TENOR=Os02t0603100-01;KEGG=Os02t0603100-01
Chr02	irgsp1_rep	five_prime_UTR	23614418	23614519	.	-	.	Parent=Os02t0603100-01
Chr02	irgsp1_rep	CDS	23612558	23614417	.	-	0	Parent=Os02t0603100-01
Chr02	irgsp1_rep	three_prime_UTR	23612056	23612557	.	-	.	Parent=Os02t0603100-01
Chr02	irgsp1_rep	mRNA	23643455	23651476	.	+	.	ID=Os02t0603600-01;Name=Os02t0603600-01;Locus_id=Os02g0603600;Oryzabase Gene Symbol Synonym(s)=OsbHLH110;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 110;Note=Conserved hypothetical protein.;Transcript_evidence=AK110833 (DDBJ%2C Best hit);ORF_evidence=B8AF19 (UniProt);NIAS_FLcDNA=002-172-A09;Oryzabase=15391;TENOR=Os02t0603600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	23643455	23643582	.	+	.	Parent=Os02t0603600-01
Chr02	irgsp1_rep	CDS	23643583	23643595	.	+	0	Parent=Os02t0603600-01
Chr02	irgsp1_rep	CDS	23648780	23649090	.	+	2	Parent=Os02t0603600-01
Chr02	irgsp1_rep	CDS	23649397	23649606	.	+	0	Parent=Os02t0603600-01
Chr02	irgsp1_rep	three_prime_UTR	23649607	23649707	.	+	.	Parent=Os02t0603600-01
Chr02	irgsp1_rep	three_prime_UTR	23650234	23650302	.	+	.	Parent=Os02t0603600-01
Chr02	irgsp1_rep	three_prime_UTR	23651068	23651476	.	+	.	Parent=Os02t0603600-01
Chr02	irgsp1_rep	mRNA	23651854	23653184	.	+	.	ID=Os02t0603700-00;Name=Os02t0603700-00;Locus_id=Os02g0603700;Note=Hypothetical conserved gene.;Transcript_evidence=EU967153 (DDBJ);ORF_evidence=NP_001173068.1 (RefSeq);TENOR=Os02t0603700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	23651854	23652495	.	+	0	Parent=Os02t0603700-00
Chr02	irgsp1_rep	three_prime_UTR	23652496	23652497	.	+	.	Parent=Os02t0603700-00
Chr02	irgsp1_rep	three_prime_UTR	23652629	23653184	.	+	.	Parent=Os02t0603700-00
Chr02	irgsp1_rep	mRNA	23653493	23659174	.	-	.	ID=Os02t0603800-01;Name=Os02t0603800-01;Locus_id=Os02g0603800;Oryzabase Gene Symbol Synonym(s)=OsHDS%2C HDS%2C OsIspG%2C IspG;Oryzabase Gene Name Synonym(s)=1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase%2C HMBDP synthase;Note=Similar to Isoprenoid biosynthesis-like protein (Fragment).;Transcript_evidence=AK105762 (DDBJ%2C Best hit),AK120769 (DDBJ%2C Best hit);ORF_evidence=Q672R6 (UniProt);GO=Biological Process: isoprenoid biosynthetic process (GO:0008299),Biological Process: terpenoid biosynthetic process (GO:0016114),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity (GO:0046429);InterPro=4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase%2C bacterial-type (IPR004588),4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase%2C atypical (IPR017178);NIAS_FLcDNA=001-202-D08,J023008D09;Oryzabase=14687;Expression=AK105762;TENOR=Os02t0603800-01;KEGG=Os02t0603800-01 (EC:1.17.7.1)
Chr02	irgsp1_rep	five_prime_UTR	23659051	23659174	.	-	.	Parent=Os02t0603800-01
Chr02	irgsp1_rep	five_prime_UTR	23658207	23658243	.	-	.	Parent=Os02t0603800-01
Chr02	irgsp1_rep	CDS	23657990	23658206	.	-	0	Parent=Os02t0603800-01
Chr02	irgsp1_rep	CDS	23657701	23657858	.	-	2	Parent=Os02t0603800-01
Chr02	irgsp1_rep	CDS	23657451	23657557	.	-	0	Parent=Os02t0603800-01
Chr02	irgsp1_rep	CDS	23657276	23657376	.	-	1	Parent=Os02t0603800-01
Chr02	irgsp1_rep	CDS	23657119	23657195	.	-	2	Parent=Os02t0603800-01
Chr02	irgsp1_rep	CDS	23656907	23657026	.	-	0	Parent=Os02t0603800-01
Chr02	irgsp1_rep	CDS	23656567	23656797	.	-	0	Parent=Os02t0603800-01
Chr02	irgsp1_rep	CDS	23656351	23656467	.	-	0	Parent=Os02t0603800-01
Chr02	irgsp1_rep	CDS	23656131	23656205	.	-	0	Parent=Os02t0603800-01
Chr02	irgsp1_rep	CDS	23655971	23656048	.	-	0	Parent=Os02t0603800-01
Chr02	irgsp1_rep	CDS	23655649	23655708	.	-	0	Parent=Os02t0603800-01
Chr02	irgsp1_rep	CDS	23655495	23655557	.	-	0	Parent=Os02t0603800-01
Chr02	irgsp1_rep	CDS	23655248	23655392	.	-	0	Parent=Os02t0603800-01
Chr02	irgsp1_rep	CDS	23654990	23655131	.	-	2	Parent=Os02t0603800-01
Chr02	irgsp1_rep	CDS	23654692	23654769	.	-	1	Parent=Os02t0603800-01
Chr02	irgsp1_rep	CDS	23654427	23654586	.	-	1	Parent=Os02t0603800-01
Chr02	irgsp1_rep	CDS	23654117	23654215	.	-	0	Parent=Os02t0603800-01
Chr02	irgsp1_rep	CDS	23653922	23654026	.	-	0	Parent=Os02t0603800-01
Chr02	irgsp1_rep	CDS	23653591	23653692	.	-	0	Parent=Os02t0603800-01
Chr02	irgsp1_rep	three_prime_UTR	23653493	23653590	.	-	.	Parent=Os02t0603800-01
Chr02	irgsp1_rep	mRNA	23653452	23658263	.	+	.	ID=Os02t0603900-00;Name=Os02t0603900-00;Locus_id=Os02g0603900;Note=Hypothetical protein.;Transcript_evidence=tplb0046d14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0603900-00
Chr02	irgsp1_rep	five_prime_UTR	23653452	23653690	.	+	.	Parent=Os02t0603900-00
Chr02	irgsp1_rep	five_prime_UTR	23653917	23654039	.	+	.	Parent=Os02t0603900-00
Chr02	irgsp1_rep	five_prime_UTR	23654132	23654214	.	+	.	Parent=Os02t0603900-00
Chr02	irgsp1_rep	five_prime_UTR	23654426	23654579	.	+	.	Parent=Os02t0603900-00
Chr02	irgsp1_rep	five_prime_UTR	23654689	23654767	.	+	.	Parent=Os02t0603900-00
Chr02	irgsp1_rep	five_prime_UTR	23654988	23655130	.	+	.	Parent=Os02t0603900-00
Chr02	irgsp1_rep	five_prime_UTR	23655247	23655382	.	+	.	Parent=Os02t0603900-00
Chr02	irgsp1_rep	five_prime_UTR	23655487	23655546	.	+	.	Parent=Os02t0603900-00
Chr02	irgsp1_rep	five_prime_UTR	23655641	23655707	.	+	.	Parent=Os02t0603900-00
Chr02	irgsp1_rep	five_prime_UTR	23655970	23656033	.	+	.	Parent=Os02t0603900-00
Chr02	irgsp1_rep	five_prime_UTR	23656116	23656184	.	+	.	Parent=Os02t0603900-00
Chr02	irgsp1_rep	five_prime_UTR	23656330	23656469	.	+	.	Parent=Os02t0603900-00
Chr02	irgsp1_rep	five_prime_UTR	23656573	23656795	.	+	.	Parent=Os02t0603900-00
Chr02	irgsp1_rep	five_prime_UTR	23656905	23657042	.	+	.	Parent=Os02t0603900-00
Chr02	irgsp1_rep	five_prime_UTR	23657137	23657195	.	+	.	Parent=Os02t0603900-00
Chr02	irgsp1_rep	five_prime_UTR	23657276	23657376	.	+	.	Parent=Os02t0603900-00
Chr02	irgsp1_rep	five_prime_UTR	23657451	23657554	.	+	.	Parent=Os02t0603900-00
Chr02	irgsp1_rep	five_prime_UTR	23657698	23657763	.	+	.	Parent=Os02t0603900-00
Chr02	irgsp1_rep	CDS	23657764	23657859	.	+	0	Parent=Os02t0603900-00
Chr02	irgsp1_rep	CDS	23657992	23658237	.	+	0	Parent=Os02t0603900-00
Chr02	irgsp1_rep	three_prime_UTR	23658238	23658263	.	+	.	Parent=Os02t0603900-00
Chr02	irgsp1_rep	mRNA	23662619	23664459	.	-	.	ID=Os02t0604000-00;Name=Os02t0604000-00;Locus_id=Os02g0604000;CGSNL Gene Symbol=GELP38;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 38;Oryzabase Gene Symbol Synonym(s)=OsGELP38;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 38;Note=Similar to alpha-L-fucosidase 2.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001151231.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);Oryzabase=10988;TENOR=Os02t0604000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	23664165	23664459	.	-	0	Parent=Os02t0604000-00
Chr02	irgsp1_rep	CDS	23663879	23664036	.	-	2	Parent=Os02t0604000-00
Chr02	irgsp1_rep	CDS	23663657	23663705	.	-	0	Parent=Os02t0604000-00
Chr02	irgsp1_rep	CDS	23663254	23663450	.	-	2	Parent=Os02t0604000-00
Chr02	irgsp1_rep	CDS	23662619	23663140	.	-	0	Parent=Os02t0604000-00
Chr02	irgsp1_rep	mRNA	23664751	23667133	.	+	.	ID=Os02t0604100-01;Name=Os02t0604100-01;Locus_id=Os02g0604100;Note=Conserved hypothetical protein.;Transcript_evidence=AK121756 (DDBJ%2C Best hit);ORF_evidence=A3A8T9 (UniProt);NIAS_FLcDNA=J033088E11;Expression=AK121756;TENOR=Os02t0604100-01;KEGG=Os02t0604100-01
Chr02	irgsp1_rep	five_prime_UTR	23664751	23664825	.	+	.	Parent=Os02t0604100-01
Chr02	irgsp1_rep	CDS	23664826	23664987	.	+	0	Parent=Os02t0604100-01
Chr02	irgsp1_rep	CDS	23665127	23665199	.	+	0	Parent=Os02t0604100-01
Chr02	irgsp1_rep	CDS	23666633	23666722	.	+	2	Parent=Os02t0604100-01
Chr02	irgsp1_rep	CDS	23666845	23666909	.	+	2	Parent=Os02t0604100-01
Chr02	irgsp1_rep	three_prime_UTR	23666910	23667133	.	+	.	Parent=Os02t0604100-01
Chr02	irgsp1_rep	mRNA	23677350	23682615	.	+	.	ID=Os02t0604300-01;Name=Os02t0604300-01;Locus_id=Os02g0604300;Note=Nucleotide-sugar transporter family protein.;Transcript_evidence=AK069982 (DDBJ%2C Best hit);ORF_evidence=B6U7G5 (UniProt);GO=Biological Process: carbohydrate transport (GO:0008643),Cellular Component: Golgi membrane (GO:0000139),Cellular Component: integral to membrane (GO:0016021),Molecular Function: sugar:hydrogen symporter activity (GO:0005351);InterPro=Nucleotide-sugar transporter (IPR007271),UDP/CMP-sugar transporter (IPR021189);NIAS_FLcDNA=J023034J11;Expression=AK069982;TENOR=Os02t0604300-01;KEGG=Os02t0604300-01
Chr02	irgsp1_rep	five_prime_UTR	23677350	23677855	.	+	.	Parent=Os02t0604300-01
Chr02	irgsp1_rep	CDS	23677856	23678026	.	+	0	Parent=Os02t0604300-01
Chr02	irgsp1_rep	CDS	23678217	23678333	.	+	0	Parent=Os02t0604300-01
Chr02	irgsp1_rep	CDS	23678899	23678955	.	+	0	Parent=Os02t0604300-01
Chr02	irgsp1_rep	CDS	23679146	23679223	.	+	0	Parent=Os02t0604300-01
Chr02	irgsp1_rep	CDS	23679329	23679373	.	+	0	Parent=Os02t0604300-01
Chr02	irgsp1_rep	CDS	23679465	23679524	.	+	0	Parent=Os02t0604300-01
Chr02	irgsp1_rep	CDS	23680131	23680253	.	+	0	Parent=Os02t0604300-01
Chr02	irgsp1_rep	CDS	23680379	23680456	.	+	0	Parent=Os02t0604300-01
Chr02	irgsp1_rep	CDS	23680655	23680724	.	+	0	Parent=Os02t0604300-01
Chr02	irgsp1_rep	CDS	23680924	23681031	.	+	2	Parent=Os02t0604300-01
Chr02	irgsp1_rep	CDS	23681150	23681283	.	+	2	Parent=Os02t0604300-01
Chr02	irgsp1_rep	CDS	23681363	23681439	.	+	0	Parent=Os02t0604300-01
Chr02	irgsp1_rep	CDS	23681634	23681682	.	+	1	Parent=Os02t0604300-01
Chr02	irgsp1_rep	CDS	23681767	23681817	.	+	0	Parent=Os02t0604300-01
Chr02	irgsp1_rep	three_prime_UTR	23681818	23681831	.	+	.	Parent=Os02t0604300-01
Chr02	irgsp1_rep	three_prime_UTR	23682296	23682615	.	+	.	Parent=Os02t0604300-01
Chr02	irgsp1_rep	mRNA	23688585	23689697	.	+	.	ID=Os02t0604600-00;Name=Os02t0604600-00;Locus_id=Os02g0604600;Note=Putative cyclin-F1-2.;Transcript_evidence=Q6K8S5 (UniProt);ORF_evidence=Q6K8S5 (UniProt);GO=Biological Process: regulation of cyclin-dependent protein kinase activity (GO:0000079),Biological Process: regulation of cell cycle (GO:0051726),Cellular Component: nucleus (GO:0005634),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin%2C C-terminal (IPR004367),Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763),Cyclin A/B/D/E (IPR014400);TENOR=Os02t0604600-00
Chr02	irgsp1_rep	CDS	23688585	23689606	.	+	0	Parent=Os02t0604600-00
Chr02	irgsp1_rep	CDS	23689640	23689697	.	+	1	Parent=Os02t0604600-00
Chr02	irgsp1_rep	mRNA	23699960	23701630	.	+	.	ID=Os02t0604700-00;Name=Os02t0604700-00;Locus_id=Os02g0604700;Note=Putative cyclin-F1-4.;Transcript_evidence=Q6K8S3 (UniProt);ORF_evidence=Q6K8S3 (UniProt);GO=Biological Process: regulation of cyclin-dependent protein kinase activity (GO:0000079),Biological Process: regulation of cell cycle (GO:0051726),Cellular Component: nucleus (GO:0005634),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin%2C C-terminal (IPR004367),Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763),Cyclin A/B/D/E (IPR014400);TENOR=Os02t0604700-00
Chr02	irgsp1_rep	CDS	23699960	23700517	.	+	0	Parent=Os02t0604700-00
Chr02	irgsp1_rep	CDS	23700619	23701025	.	+	0	Parent=Os02t0604700-00
Chr02	irgsp1_rep	CDS	23701297	23701630	.	+	1	Parent=Os02t0604700-00
Chr02	irgsp1_rep	mRNA	23703991	23707335	.	+	.	ID=Os02t0604800-00;Name=Os02t0604800-00;Locus_id=Os02g0604800;Note=Putative cyclin-F1-3.;Transcript_evidence=Q6K8S1 (UniProt);ORF_evidence=Q6K8S1 (UniProt);GO=Biological Process: regulation of cyclin-dependent protein kinase activity (GO:0000079),Biological Process: regulation of cell cycle (GO:0051726),Cellular Component: nucleus (GO:0005634),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin%2C C-terminal (IPR004367),Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763),Cyclin A/B/D/E (IPR014400);TENOR=Os02t0604800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	23703991	23704108	.	+	0	Parent=Os02t0604800-00
Chr02	irgsp1_rep	CDS	23705890	23706838	.	+	2	Parent=Os02t0604800-00
Chr02	irgsp1_rep	CDS	23707272	23707335	.	+	1	Parent=Os02t0604800-00
Chr02	irgsp1_rep	mRNA	23710890	23712446	.	+	.	ID=Os02t0605000-01;Name=Os02t0605000-01;Locus_id=Os02g0605000;Note=Cyclin%2C A/B/D/E domain containing protein.;Transcript_evidence=AK108680 (DDBJ%2C Best hit);ORF_evidence=Q6K8S0 (UniProt);GO=Biological Process: regulation of cyclin-dependent protein kinase activity (GO:0000079),Biological Process: regulation of cell cycle (GO:0051726),Cellular Component: nucleus (GO:0005634),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin%2C C-terminal (IPR004367),Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763),Cyclin A/B/D/E (IPR014400);NIAS_FLcDNA=002-149-B04;Expression=AK108680;TENOR=Os02t0605000-01;KEGG=Os02t0605000-01
Chr02	irgsp1_rep	five_prime_UTR	23710890	23711002	.	+	.	Parent=Os02t0605000-01
Chr02	irgsp1_rep	CDS	23711003	23712343	.	+	0	Parent=Os02t0605000-01
Chr02	irgsp1_rep	three_prime_UTR	23712344	23712446	.	+	.	Parent=Os02t0605000-01
Chr02	irgsp1_rep	mRNA	23721161	23725135	.	+	.	ID=Os02t0605400-00;Name=Os02t0605400-00;Locus_id=Os02g0605400;Note=C2 calcium-dependent membrane targeting domain containing protein.;Transcript_evidence=BT067564 (DDBJ);ORF_evidence=B8AF24 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),C2 membrane targeting protein (IPR018029);TENOR=Os02t0605400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	23721161	23721247	.	+	0	Parent=Os02t0605400-00
Chr02	irgsp1_rep	CDS	23722440	23722592	.	+	0	Parent=Os02t0605400-00
Chr02	irgsp1_rep	three_prime_UTR	23722937	23723200	.	+	.	Parent=Os02t0605400-00
Chr02	irgsp1_rep	three_prime_UTR	23723514	23723645	.	+	.	Parent=Os02t0605400-00
Chr02	irgsp1_rep	three_prime_UTR	23724175	23724281	.	+	.	Parent=Os02t0605400-00
Chr02	irgsp1_rep	three_prime_UTR	23724341	23724513	.	+	.	Parent=Os02t0605400-00
Chr02	irgsp1_rep	three_prime_UTR	23724630	23724707	.	+	.	Parent=Os02t0605400-00
Chr02	irgsp1_rep	three_prime_UTR	23724839	23724985	.	+	.	Parent=Os02t0605400-00
Chr02	irgsp1_rep	three_prime_UTR	23725080	23725135	.	+	.	Parent=Os02t0605400-00
Chr02	irgsp1_rep	mRNA	23726254	23729125	.	-	.	ID=Os02t0605500-01;Name=Os02t0605500-01;Locus_id=Os02g0605500;Note=Zinc finger%2C TRAF-type domain containing protein.;Transcript_evidence=AK067496 (DDBJ%2C Best hit);ORF_evidence=A2X6Z6 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C TRAF-type (IPR001293);NIAS_FLcDNA=J013109L15;Expression=AK067496;TENOR=Os02t0605500-01;KEGG=Os02t0605500-01
Chr02	irgsp1_rep	five_prime_UTR	23728943	23729125	.	-	.	Parent=Os02t0605500-01
Chr02	irgsp1_rep	five_prime_UTR	23728174	23728213	.	-	.	Parent=Os02t0605500-01
Chr02	irgsp1_rep	CDS	23727268	23728173	.	-	0	Parent=Os02t0605500-01
Chr02	irgsp1_rep	CDS	23726543	23726704	.	-	0	Parent=Os02t0605500-01
Chr02	irgsp1_rep	three_prime_UTR	23726254	23726542	.	-	.	Parent=Os02t0605500-01
Chr02	irgsp1_rep	mRNA	23729293	23734397	.	+	.	ID=Os02t0605600-01;Name=Os02t0605600-01;Locus_id=Os02g0605600;Note=LUC7 related family protein.;Transcript_evidence=AK066104 (DDBJ%2C Best hit);ORF_evidence=NP_568347.1 (RefSeq);InterPro=LUC7-related (IPR004882);NIAS_FLcDNA=J013052G16;Expression=AK066104;TENOR=Os02t0605600-01;KEGG=Os02t0605600-01
Chr02	irgsp1_rep	five_prime_UTR	23729293	23729390	.	+	.	Parent=Os02t0605600-01
Chr02	irgsp1_rep	CDS	23729391	23729537	.	+	0	Parent=Os02t0605600-01
Chr02	irgsp1_rep	CDS	23729661	23729713	.	+	0	Parent=Os02t0605600-01
Chr02	irgsp1_rep	CDS	23730502	23730670	.	+	1	Parent=Os02t0605600-01
Chr02	irgsp1_rep	CDS	23730756	23730819	.	+	0	Parent=Os02t0605600-01
Chr02	irgsp1_rep	CDS	23731474	23731553	.	+	2	Parent=Os02t0605600-01
Chr02	irgsp1_rep	CDS	23731735	23731894	.	+	0	Parent=Os02t0605600-01
Chr02	irgsp1_rep	CDS	23732022	23732083	.	+	2	Parent=Os02t0605600-01
Chr02	irgsp1_rep	CDS	23732214	23732273	.	+	0	Parent=Os02t0605600-01
Chr02	irgsp1_rep	CDS	23732431	23732489	.	+	0	Parent=Os02t0605600-01
Chr02	irgsp1_rep	CDS	23732801	23732882	.	+	1	Parent=Os02t0605600-01
Chr02	irgsp1_rep	CDS	23733298	23733347	.	+	0	Parent=Os02t0605600-01
Chr02	irgsp1_rep	CDS	23733454	23733696	.	+	1	Parent=Os02t0605600-01
Chr02	irgsp1_rep	CDS	23734115	23734142	.	+	1	Parent=Os02t0605600-01
Chr02	irgsp1_rep	three_prime_UTR	23734143	23734397	.	+	.	Parent=Os02t0605600-01
Chr02	irgsp1_rep	mRNA	23743045	23744109	.	-	.	ID=Os02t0605900-01;Name=Os02t0605900-01;Locus_id=Os02g0605900;CGSNL Gene Symbol=CHT6;CGSNL Gene Name=CHITINASE 6;Oryzabase Gene Symbol Synonym(s)=Cht6;Oryzabase Gene Name Synonym(s)=Chitinase6%2C Chitinase 6%2C Pathogenesis related (PR)-3 chitinase 6%2C Chitinase-6;Note=Similar to Chitinase (EC 3.2.1.14) A.;Transcript_evidence=AK064754 (DDBJ%2C Best hit);ORF_evidence=Q6K8R2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: chitin catabolic process (GO:0006032),Biological Process: cell wall macromolecule catabolic process (GO:0016998),Molecular Function: chitinase activity (GO:0004568),Molecular Function: chitin binding (GO:0008061);InterPro=Glycoside hydrolase%2C family 19%2C catalytic (IPR000726),Chitin-binding%2C type 1 (IPR001002),Glycoside hydrolase%2C family 19 (IPR016283),Chitin-binding%2C type 1%2C conserved site (IPR018371),Lysozyme-like domain (IPR023346);NIAS_FLcDNA=002-120-G01;Oryzabase=8128;Expression=AK064754;TENOR=Os02t0605900-01;KEGG=Os02t0605900-01 (EC:3.2.1.14)
Chr02	irgsp1_rep	five_prime_UTR	23744061	23744109	.	-	.	Parent=Os02t0605900-01
Chr02	irgsp1_rep	CDS	23743658	23744060	.	-	0	Parent=Os02t0605900-01
Chr02	irgsp1_rep	CDS	23743156	23743568	.	-	2	Parent=Os02t0605900-01
Chr02	irgsp1_rep	three_prime_UTR	23743045	23743155	.	-	.	Parent=Os02t0605900-01
Chr02	irgsp1_rep	mRNA	23745236	23748951	.	+	.	ID=Os02t0606000-01;Name=Os02t0606000-01;Locus_id=Os02g0606000;RAP-DB Gene Symbol Synonym(s)=OsDG2;RAP-DB Gene Name Synonym(s)=delayed greening 2;Oryzabase Gene Symbol Synonym(s)=OsDG2;Oryzabase Gene Name Synonym(s)=delayed greening 2;Note=Glycine-rich protein (GRP)%2C Regulation of chloroplast development at early leaf stage;Transcript_evidence=AK058232,AK060085,AK101400;ORF_evidence=Q6K8R1;NIAS_FLcDNA=001-011-C02, 006-306-F03, J033037F09;Manual Curation=January 18%2C 2017;Literature_PMID=24430865;Oryzabase=15628;TENOR=Os02t0606000-01
Chr02	irgsp1_rep	five_prime_UTR	23745236	23745365	.	+	.	Parent=Os02t0606000-01
Chr02	irgsp1_rep	five_prime_UTR	23746654	23746695	.	+	.	Parent=Os02t0606000-01
Chr02	irgsp1_rep	CDS	23746696	23746935	.	+	0	Parent=Os02t0606000-01
Chr02	irgsp1_rep	CDS	23747583	23747819	.	+	0	Parent=Os02t0606000-01
Chr02	irgsp1_rep	CDS	23748208	23748483	.	+	0	Parent=Os02t0606000-01
Chr02	irgsp1_rep	three_prime_UTR	23748484	23748951	.	+	.	Parent=Os02t0606000-01
Chr02	irgsp1_rep	mRNA	23749148	23750278	.	-	.	ID=Os02t0606100-00;Name=Os02t0606100-00;Locus_id=Os02g0606100;Note=Similar to eukaryotic translation initiation factor-related.;Transcript_evidence=CT835360 (DDBJ%2C Best hit);ORF_evidence=NP_001047375.2 (RefSeq);TENOR=Os02t0606100-00;KEGG=Os02t0606100-00
Chr02	irgsp1_rep	CDS	23750179	23750278	.	-	0	Parent=Os02t0606100-00
Chr02	irgsp1_rep	CDS	23749986	23750104	.	-	2	Parent=Os02t0606100-00
Chr02	irgsp1_rep	CDS	23749612	23749637	.	-	0	Parent=Os02t0606100-00
Chr02	irgsp1_rep	CDS	23749415	23749517	.	-	1	Parent=Os02t0606100-00
Chr02	irgsp1_rep	three_prime_UTR	23749148	23749414	.	-	.	Parent=Os02t0606100-00
Chr02	irgsp1_rep	mRNA	23759252	23760433	.	+	.	ID=Os02t0606200-01;Name=Os02t0606200-01;Locus_id=Os02g0606200;Oryzabase Gene Symbol Synonym(s)=OsBBX4%2C OsSTH%2C BBX4%2C STH;Oryzabase Gene Name Synonym(s)=B-box-containing protein 4;Note=Zinc finger%2C B-box domain containing protein.;Transcript_evidence=AK061044 (DDBJ%2C Best hit),AK104293 (DDBJ%2C Best hit);ORF_evidence=B6TXF7 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C B-box (IPR000315);NIAS_FLcDNA=006-205-E01,001-007-G06;Oryzabase=11636;TENOR=Os02t0606200-01
Chr02	irgsp1_rep	five_prime_UTR	23759252	23759375	.	+	.	Parent=Os02t0606200-01
Chr02	irgsp1_rep	CDS	23759376	23759895	.	+	0	Parent=Os02t0606200-01
Chr02	irgsp1_rep	CDS	23760000	23760295	.	+	2	Parent=Os02t0606200-01
Chr02	irgsp1_rep	three_prime_UTR	23760296	23760433	.	+	.	Parent=Os02t0606200-01
Chr02	irgsp1_rep	mRNA	23760964	23766121	.	-	.	ID=Os02t0606300-00;Name=Os02t0606300-00;Locus_id=Os02g0606300;Note=Similar to Met-10+ like family protein.;Transcript_evidence=AK334149 (DDBJ);ORF_evidence=NP_567034.1 (RefSeq);TENOR=Os02t0606300-00;KEGG=Os02t0606300-00
Chr02	irgsp1_rep	CDS	23765775	23766121	.	-	0	Parent=Os02t0606300-00
Chr02	irgsp1_rep	CDS	23765530	23765627	.	-	1	Parent=Os02t0606300-00
Chr02	irgsp1_rep	CDS	23765064	23765168	.	-	2	Parent=Os02t0606300-00
Chr02	irgsp1_rep	CDS	23764706	23764767	.	-	2	Parent=Os02t0606300-00
Chr02	irgsp1_rep	CDS	23764590	23764607	.	-	0	Parent=Os02t0606300-00
Chr02	irgsp1_rep	three_prime_UTR	23764534	23764589	.	-	.	Parent=Os02t0606300-00
Chr02	irgsp1_rep	three_prime_UTR	23763530	23764049	.	-	.	Parent=Os02t0606300-00
Chr02	irgsp1_rep	three_prime_UTR	23763351	23763437	.	-	.	Parent=Os02t0606300-00
Chr02	irgsp1_rep	three_prime_UTR	23763060	23763206	.	-	.	Parent=Os02t0606300-00
Chr02	irgsp1_rep	three_prime_UTR	23761723	23761829	.	-	.	Parent=Os02t0606300-00
Chr02	irgsp1_rep	three_prime_UTR	23761534	23761608	.	-	.	Parent=Os02t0606300-00
Chr02	irgsp1_rep	three_prime_UTR	23760964	23761205	.	-	.	Parent=Os02t0606300-00
Chr02	irgsp1_rep	mRNA	23766606	23767446	.	+	.	ID=Os02t0606400-01;Name=Os02t0606400-01;Locus_id=Os02g0606400;Note=Hypothetical protein.;Transcript_evidence=AK100200 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023038E16;TENOR=Os02t0606400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	23766606	23766924	.	+	.	Parent=Os02t0606400-01
Chr02	irgsp1_rep	CDS	23766925	23767359	.	+	0	Parent=Os02t0606400-01
Chr02	irgsp1_rep	three_prime_UTR	23767360	23767446	.	+	.	Parent=Os02t0606400-01
Chr02	irgsp1_rep	mRNA	23768429	23769162	.	-	.	ID=Os02t0606600-01;Name=Os02t0606600-01;Locus_id=Os02g0606600;CGSNL Gene Symbol=CML17;CGSNL Gene Name=CALMODULIN-LIKE PROTEIN 17;Oryzabase Gene Symbol Synonym(s)=OsCML17;Oryzabase Gene Name Synonym(s)=calmodulin-like protein 17;Note=Hypothetical conserved gene.;Transcript_evidence=AK062478 (DDBJ%2C Best hit);ORF_evidence=B9F0Z4 (UniProt);NIAS_FLcDNA=001-103-F12;Oryzabase=10503;Expression=AK062478;TENOR=Os02t0606600-01;KEGG=Os02t0606600-01
Chr02	irgsp1_rep	five_prime_UTR	23768814	23769162	.	-	.	Parent=Os02t0606600-01
Chr02	irgsp1_rep	CDS	23768661	23768813	.	-	0	Parent=Os02t0606600-01
Chr02	irgsp1_rep	CDS	23768504	23768566	.	-	0	Parent=Os02t0606600-01
Chr02	irgsp1_rep	three_prime_UTR	23768429	23768503	.	-	.	Parent=Os02t0606600-01
Chr02	irgsp1_rep	mRNA	23769400	23772793	.	+	.	ID=Os02t0606700-01;Name=Os02t0606700-01;Locus_id=Os02g0606700;RAP-DB Gene Symbol Synonym(s)=RSS1;RAP-DB Gene Name Synonym(s)=rice salt sensitive 1;CGSNL Gene Symbol=RSS1;CGSNL Gene Name=RICE SALT SENSITIVE 1;Note=D-box containing protein%2C Regulation of the cell cycle%2C Maintenance of meristematic activity under stress conditions;Transcript_evidence=AK063512,AB753859;ORF_evidence=Q6K1Z8;NIAS_FLcDNA=001-116-G03;Manual Curation=February 27%2C 2018;Literature_PMID=23041461,21505434;Oryzabase=10273;Expression=AK063512;TENOR=Os02t0606700-01;KEGG=Os02t0606700-01;Subcellular location=nucleus (GO:0005634), cytosol (GO:0005829)
Chr02	irgsp1_rep	five_prime_UTR	23769400	23769609	.	+	.	Parent=Os02t0606700-01
Chr02	irgsp1_rep	five_prime_UTR	23770369	23770402	.	+	.	Parent=Os02t0606700-01
Chr02	irgsp1_rep	CDS	23770403	23770460	.	+	0	Parent=Os02t0606700-01
Chr02	irgsp1_rep	CDS	23770545	23770913	.	+	2	Parent=Os02t0606700-01
Chr02	irgsp1_rep	CDS	23771017	23771102	.	+	2	Parent=Os02t0606700-01
Chr02	irgsp1_rep	CDS	23772094	23772181	.	+	0	Parent=Os02t0606700-01
Chr02	irgsp1_rep	CDS	23772303	23772433	.	+	2	Parent=Os02t0606700-01
Chr02	irgsp1_rep	three_prime_UTR	23772434	23772793	.	+	.	Parent=Os02t0606700-01
Chr02	irgsp1_rep	mRNA	23773136	23775628	.	+	.	ID=Os02t0606800-01;Name=Os02t0606800-01;Locus_id=Os02g0606800;CGSNL Gene Symbol=NIC;CGSNL Gene Name=NICOTINAMIDASE;Oryzabase Gene Symbol Synonym(s)=OsNIC;Oryzabase Gene Name Synonym(s)=nicotinamidase;Note=Isochorismatase hydrolase family protein.;Transcript_evidence=AK073760 (DDBJ%2C Best hit);ORF_evidence=B6TNR9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Isochorismatase-like (IPR000868);NIAS_FLcDNA=J033067C04;Oryzabase=21096;Expression=AK073760;TENOR=Os02t0606800-01;KEGG=Os02t0606800-01
Chr02	irgsp1_rep	five_prime_UTR	23773136	23773209	.	+	.	Parent=Os02t0606800-01
Chr02	irgsp1_rep	CDS	23773210	23773389	.	+	0	Parent=Os02t0606800-01
Chr02	irgsp1_rep	CDS	23774024	23774207	.	+	0	Parent=Os02t0606800-01
Chr02	irgsp1_rep	CDS	23774384	23774517	.	+	2	Parent=Os02t0606800-01
Chr02	irgsp1_rep	CDS	23774604	23774789	.	+	0	Parent=Os02t0606800-01
Chr02	irgsp1_rep	CDS	23775316	23775390	.	+	0	Parent=Os02t0606800-01
Chr02	irgsp1_rep	three_prime_UTR	23775391	23775628	.	+	.	Parent=Os02t0606800-01
Chr02	irgsp1_rep	mRNA	23776279	23782298	.	-	.	ID=Os02t0606900-01;Name=Os02t0606900-01;Locus_id=Os02g0606900;Oryzabase Gene Symbol Synonym(s)=OsPP2C21%2C PP2C21%2C OsPP31;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C21%2C protein phosphatase 2C 21%2C protein phosphatase 31;Note=Similar to cDNA clone:J023104F18%2C full insert sequence.;Transcript_evidence=AK072375 (DDBJ%2C Best hit);ORF_evidence=B7EQK8 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J023065M01;Oryzabase=17897;Expression=AK072375;TENOR=Os02t0606900-01;KEGG=Os02t0606900-01 (EC:3.1.3.16)
Chr02	irgsp1_rep	five_prime_UTR	23779941	23782298	.	-	.	Parent=Os02t0606900-01
Chr02	irgsp1_rep	CDS	23779821	23779940	.	-	0	Parent=Os02t0606900-01
Chr02	irgsp1_rep	CDS	23779650	23779713	.	-	0	Parent=Os02t0606900-01
Chr02	irgsp1_rep	CDS	23779331	23779436	.	-	2	Parent=Os02t0606900-01
Chr02	irgsp1_rep	CDS	23779046	23779154	.	-	1	Parent=Os02t0606900-01
Chr02	irgsp1_rep	CDS	23778455	23778571	.	-	0	Parent=Os02t0606900-01
Chr02	irgsp1_rep	CDS	23778220	23778343	.	-	0	Parent=Os02t0606900-01
Chr02	irgsp1_rep	CDS	23778060	23778136	.	-	2	Parent=Os02t0606900-01
Chr02	irgsp1_rep	CDS	23777931	23777983	.	-	0	Parent=Os02t0606900-01
Chr02	irgsp1_rep	CDS	23777203	23777257	.	-	1	Parent=Os02t0606900-01
Chr02	irgsp1_rep	CDS	23776564	23776761	.	-	0	Parent=Os02t0606900-01
Chr02	irgsp1_rep	three_prime_UTR	23776279	23776563	.	-	.	Parent=Os02t0606900-01
Chr02	irgsp1_rep	mRNA	23776284	23780985	.	-	.	ID=Os02t0606900-02;Name=Os02t0606900-02;Locus_id=Os02g0606900;Oryzabase Gene Symbol Synonym(s)=OsPP2C21%2C PP2C21%2C OsPP31;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C21%2C protein phosphatase 2C 21%2C protein phosphatase 31;Note=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site domain containing protein.;Transcript_evidence=AK100561 (DDBJ%2C Best hit);ORF_evidence=B8AF28 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J023104F18;Oryzabase=17897;TENOR=Os02t0606900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	23779980	23780985	.	-	.	Parent=Os02t0606900-02
Chr02	irgsp1_rep	CDS	23779821	23779979	.	-	0	Parent=Os02t0606900-02
Chr02	irgsp1_rep	CDS	23779650	23779713	.	-	0	Parent=Os02t0606900-02
Chr02	irgsp1_rep	CDS	23779331	23779436	.	-	2	Parent=Os02t0606900-02
Chr02	irgsp1_rep	CDS	23779046	23779154	.	-	1	Parent=Os02t0606900-02
Chr02	irgsp1_rep	CDS	23778455	23778571	.	-	0	Parent=Os02t0606900-02
Chr02	irgsp1_rep	CDS	23778220	23778343	.	-	0	Parent=Os02t0606900-02
Chr02	irgsp1_rep	CDS	23778060	23778136	.	-	2	Parent=Os02t0606900-02
Chr02	irgsp1_rep	CDS	23777927	23777983	.	-	0	Parent=Os02t0606900-02
Chr02	irgsp1_rep	three_prime_UTR	23777203	23777926	.	-	.	Parent=Os02t0606900-02
Chr02	irgsp1_rep	three_prime_UTR	23776284	23776761	.	-	.	Parent=Os02t0606900-02
Chr02	irgsp1_rep	mRNA	23784761	23785933	.	-	.	ID=Os02t0607000-00;Name=Os02t0607000-00;Locus_id=Os02g0607000;Note=Putative cyclin-F2-1.;Transcript_evidence=Q6K1Z6 (UniProt);ORF_evidence=Q6K1Z6 (UniProt);GO=Biological Process: regulation of cyclin-dependent protein kinase activity (GO:0000079),Biological Process: regulation of cell cycle (GO:0051726),Cellular Component: nucleus (GO:0005634),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin%2C C-terminal (IPR004367),Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763),Cyclin A/B/D/E (IPR014400);TENOR=Os02t0607000-00
Chr02	irgsp1_rep	CDS	23784761	23785933	.	-	0	Parent=Os02t0607000-00
Chr02	irgsp1_rep	mRNA	23788901	23790044	.	-	.	ID=Os02t0607100-00;Name=Os02t0607100-00;Locus_id=Os02g0607100;Note=Putative uncharacterized protein.;Transcript_evidence=Q6K8S5 (UniProt);ORF_evidence=A3A8W4 (UniProt);GO=Biological Process: regulation of cyclin-dependent protein kinase activity (GO:0000079),Biological Process: regulation of cell cycle (GO:0051726),Cellular Component: nucleus (GO:0005634),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin%2C C-terminal (IPR004367),Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763),Cyclin A/B/D/E (IPR014400);TENOR=Os02t0607100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	23789810	23790044	.	-	0	Parent=Os02t0607100-00
Chr02	irgsp1_rep	CDS	23788957	23789755	.	-	2	Parent=Os02t0607100-00
Chr02	irgsp1_rep	CDS	23788901	23788919	.	-	1	Parent=Os02t0607100-00
Chr02	irgsp1_rep	mRNA	23810292	23812868	.	-	.	ID=Os02t0607400-00;Name=Os02t0607400-00;Locus_id=Os02g0607400;CGSNL Gene Symbol=PP32;CGSNL Gene Name=PROTEIN PHOSPHATASE 32;Oryzabase Gene Symbol Synonym(s)=OsPP32;Oryzabase Gene Name Synonym(s)=Protein phosphatase 32;Note=Putative cyclin-F1-1.;Transcript_evidence=Q6K1Z1 (UniProt);ORF_evidence=Q6K1Z1 (UniProt);GO=Biological Process: regulation of cyclin-dependent protein kinase activity (GO:0000079),Biological Process: regulation of cell cycle (GO:0051726),Cellular Component: nucleus (GO:0005634),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin%2C C-terminal (IPR004367),Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763),Cyclin A/B/D/E (IPR014400);Oryzabase=18633;TENOR=Os02t0607400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	23811883	23812868	.	-	0	Parent=Os02t0607400-00
Chr02	irgsp1_rep	CDS	23810791	23810791	.	-	1	Parent=Os02t0607400-00
Chr02	irgsp1_rep	CDS	23810292	23810444	.	-	0	Parent=Os02t0607400-00
Chr02	irgsp1_rep	mRNA	23821241	23826110	.	-	.	ID=Os02t0607500-00;Name=Os02t0607500-00;Locus_id=Os02g0607500;Oryzabase Gene Symbol Synonym(s)=OsPP2C22%2C PP2C22%2C OsPP33;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C22%2C protein phosphatase 2C 22%2C protein phosphatase 33;Note=Putative protein phosphatase 2C 22.;Transcript_evidence=A3A8W6 (UniProt);ORF_evidence=A3A8W6 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);Oryzabase=17898;TENOR=Os02t0607500-00
Chr02	irgsp1_rep	CDS	23826017	23826110	.	-	0	Parent=Os02t0607500-00
Chr02	irgsp1_rep	CDS	23825836	23825936	.	-	2	Parent=Os02t0607500-00
Chr02	irgsp1_rep	CDS	23825037	23825195	.	-	0	Parent=Os02t0607500-00
Chr02	irgsp1_rep	CDS	23824843	23824912	.	-	0	Parent=Os02t0607500-00
Chr02	irgsp1_rep	CDS	23824461	23824566	.	-	2	Parent=Os02t0607500-00
Chr02	irgsp1_rep	CDS	23824122	23824263	.	-	1	Parent=Os02t0607500-00
Chr02	irgsp1_rep	CDS	23823605	23823727	.	-	0	Parent=Os02t0607500-00
Chr02	irgsp1_rep	CDS	23823309	23823486	.	-	0	Parent=Os02t0607500-00
Chr02	irgsp1_rep	CDS	23823151	23823251	.	-	2	Parent=Os02t0607500-00
Chr02	irgsp1_rep	CDS	23823022	23823074	.	-	0	Parent=Os02t0607500-00
Chr02	irgsp1_rep	CDS	23822349	23822451	.	-	1	Parent=Os02t0607500-00
Chr02	irgsp1_rep	CDS	23821995	23822108	.	-	0	Parent=Os02t0607500-00
Chr02	irgsp1_rep	CDS	23821241	23821642	.	-	0	Parent=Os02t0607500-00
Chr02	irgsp1_rep	mRNA	23829191	23834725	.	-	.	ID=Os02t0607700-01;Name=Os02t0607700-01;Locus_id=Os02g0607700;Note=Short-chain dehydrogenase/reductase SDR domain containing protein.;Transcript_evidence=AK109261 (DDBJ%2C Best hit);ORF_evidence=Q01IF3 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);NIAS_FLcDNA=002-185-B01;Expression=AK109261;TENOR=Os02t0607700-01;KEGG=Os02t0607700-01
Chr02	irgsp1_rep	five_prime_UTR	23834667	23834725	.	-	.	Parent=Os02t0607700-01
Chr02	irgsp1_rep	CDS	23834626	23834666	.	-	0	Parent=Os02t0607700-01
Chr02	irgsp1_rep	CDS	23834251	23834515	.	-	1	Parent=Os02t0607700-01
Chr02	irgsp1_rep	CDS	23831222	23831404	.	-	0	Parent=Os02t0607700-01
Chr02	irgsp1_rep	CDS	23829358	23829765	.	-	0	Parent=Os02t0607700-01
Chr02	irgsp1_rep	three_prime_UTR	23829191	23829357	.	-	.	Parent=Os02t0607700-01
Chr02	irgsp1_rep	mRNA	23845809	23846604	.	+	.	ID=Os02t0608000-00;Name=Os02t0608000-00;Locus_id=Os02g0608000;Note=Protein of unknown function DUF1218 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6K1Y5 (UniProt);InterPro=Protein of unknown function DUF1218 (IPR009606);TENOR=Os02t0608000-00
Chr02	irgsp1_rep	CDS	23845809	23846044	.	+	0	Parent=Os02t0608000-00
Chr02	irgsp1_rep	CDS	23846076	23846604	.	+	1	Parent=Os02t0608000-00
Chr02	irgsp1_rep	mRNA	23849739	23853728	.	+	.	ID=Os02t0608100-01;Name=Os02t0608100-01;Locus_id=Os02g0608100;Note=FAR1 domain containing protein.;Transcript_evidence=AK119319 (DDBJ%2C Best hit);ORF_evidence=B9F100 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=FAR1 DNA binding domain (IPR004330),Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);NIAS_FLcDNA=001-130-H08;Expression=AK119319;TENOR=Os02t0608100-01;KEGG=Os02t0608100-01
Chr02	irgsp1_rep	five_prime_UTR	23849739	23850053	.	+	.	Parent=Os02t0608100-01
Chr02	irgsp1_rep	five_prime_UTR	23850171	23850397	.	+	.	Parent=Os02t0608100-01
Chr02	irgsp1_rep	CDS	23850398	23850514	.	+	0	Parent=Os02t0608100-01
Chr02	irgsp1_rep	CDS	23850600	23852738	.	+	0	Parent=Os02t0608100-01
Chr02	irgsp1_rep	CDS	23852842	23852943	.	+	0	Parent=Os02t0608100-01
Chr02	irgsp1_rep	CDS	23853019	23853126	.	+	0	Parent=Os02t0608100-01
Chr02	irgsp1_rep	CDS	23853327	23853380	.	+	0	Parent=Os02t0608100-01
Chr02	irgsp1_rep	CDS	23853465	23853506	.	+	0	Parent=Os02t0608100-01
Chr02	irgsp1_rep	three_prime_UTR	23853507	23853728	.	+	.	Parent=Os02t0608100-01
Chr02	irgsp1_rep	mRNA	23849743	23851280	.	+	.	ID=Os02t0608100-02;Name=Os02t0608100-02;Locus_id=Os02g0608100;Note=Hypothetical conserved gene.;Transcript_evidence=AK109586 (DDBJ%2C Best hit);ORF_evidence=B8AF37 (UniProt);InterPro=FAR1 DNA binding domain (IPR004330);NIAS_FLcDNA=002-137-B03;Expression=AK109586;TENOR=Os02t0608100-02;KEGG=Os02t0608100-02
Chr02	irgsp1_rep	five_prime_UTR	23849743	23850053	.	+	.	Parent=Os02t0608100-02
Chr02	irgsp1_rep	five_prime_UTR	23850171	23850397	.	+	.	Parent=Os02t0608100-02
Chr02	irgsp1_rep	CDS	23850398	23850514	.	+	0	Parent=Os02t0608100-02
Chr02	irgsp1_rep	CDS	23850600	23851280	.	+	0	Parent=Os02t0608100-02
Chr02	irgsp1_rep	mRNA	23855880	23858516	.	-	.	ID=Os02t0608200-01;Name=Os02t0608200-01;Locus_id=Os02g0608200;Note=Conserved hypothetical protein.;Transcript_evidence=AK120150 (DDBJ%2C Best hit);ORF_evidence=B9F101 (UniProt);NIAS_FLcDNA=J013029L08;TENOR=Os02t0608200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	23857949	23858516	.	-	.	Parent=Os02t0608200-01
Chr02	irgsp1_rep	five_prime_UTR	23857733	23857865	.	-	.	Parent=Os02t0608200-01
Chr02	irgsp1_rep	five_prime_UTR	23856765	23857391	.	-	.	Parent=Os02t0608200-01
Chr02	irgsp1_rep	CDS	23856612	23856764	.	-	0	Parent=Os02t0608200-01
Chr02	irgsp1_rep	CDS	23856082	23856180	.	-	0	Parent=Os02t0608200-01
Chr02	irgsp1_rep	three_prime_UTR	23855880	23856081	.	-	.	Parent=Os02t0608200-01
Chr02	irgsp1_rep	mRNA	23859839	23864592	.	+	.	ID=Os02t0608300-01;Name=Os02t0608300-01;Locus_id=Os02g0608300;Note=FAR1 domain containing protein.;Transcript_evidence=AK073527 (DDBJ%2C Best hit);ORF_evidence=Q6K1Y1 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=FAR1 DNA binding domain (IPR004330),Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);NIAS_FLcDNA=J033046M02;Expression=AK073527;TENOR=Os02t0608300-01;KEGG=Os02t0608300-01
Chr02	irgsp1_rep	five_prime_UTR	23859839	23860129	.	+	.	Parent=Os02t0608300-01
Chr02	irgsp1_rep	five_prime_UTR	23860260	23860287	.	+	.	Parent=Os02t0608300-01
Chr02	irgsp1_rep	CDS	23860288	23860362	.	+	0	Parent=Os02t0608300-01
Chr02	irgsp1_rep	CDS	23861138	23863165	.	+	0	Parent=Os02t0608300-01
Chr02	irgsp1_rep	CDS	23863294	23863329	.	+	0	Parent=Os02t0608300-01
Chr02	irgsp1_rep	CDS	23863433	23863546	.	+	0	Parent=Os02t0608300-01
Chr02	irgsp1_rep	CDS	23863765	23863833	.	+	0	Parent=Os02t0608300-01
Chr02	irgsp1_rep	CDS	23863918	23864052	.	+	0	Parent=Os02t0608300-01
Chr02	irgsp1_rep	three_prime_UTR	23864053	23864089	.	+	.	Parent=Os02t0608300-01
Chr02	irgsp1_rep	three_prime_UTR	23864207	23864592	.	+	.	Parent=Os02t0608300-01
Chr02	irgsp1_rep	mRNA	23866527	23874850	.	-	.	ID=Os02t0608400-01;Name=Os02t0608400-01;Locus_id=Os02g0608400;Note=EF-Hand type domain containing protein.;Transcript_evidence=AK100424 (DDBJ%2C Best hit);ORF_evidence=Q0IKM2 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=LETM1-like (IPR011685),EF-hand-like domain (IPR011992),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J023088B16;Expression=AK100424;TENOR=Os02t0608400-01;KEGG=Os02t0608400-01
Chr02	irgsp1_rep	five_prime_UTR	23874604	23874850	.	-	.	Parent=Os02t0608400-01
Chr02	irgsp1_rep	five_prime_UTR	23873786	23873848	.	-	.	Parent=Os02t0608400-01
Chr02	irgsp1_rep	CDS	23873187	23873785	.	-	0	Parent=Os02t0608400-01
Chr02	irgsp1_rep	CDS	23872768	23873080	.	-	1	Parent=Os02t0608400-01
Chr02	irgsp1_rep	CDS	23872329	23872475	.	-	0	Parent=Os02t0608400-01
Chr02	irgsp1_rep	CDS	23872148	23872236	.	-	0	Parent=Os02t0608400-01
Chr02	irgsp1_rep	CDS	23871965	23872057	.	-	1	Parent=Os02t0608400-01
Chr02	irgsp1_rep	CDS	23870993	23871119	.	-	1	Parent=Os02t0608400-01
Chr02	irgsp1_rep	CDS	23870243	23870307	.	-	0	Parent=Os02t0608400-01
Chr02	irgsp1_rep	CDS	23869977	23870148	.	-	1	Parent=Os02t0608400-01
Chr02	irgsp1_rep	CDS	23868773	23868991	.	-	0	Parent=Os02t0608400-01
Chr02	irgsp1_rep	CDS	23868553	23868600	.	-	0	Parent=Os02t0608400-01
Chr02	irgsp1_rep	CDS	23868290	23868436	.	-	0	Parent=Os02t0608400-01
Chr02	irgsp1_rep	CDS	23867652	23867734	.	-	0	Parent=Os02t0608400-01
Chr02	irgsp1_rep	CDS	23867063	23867178	.	-	1	Parent=Os02t0608400-01
Chr02	irgsp1_rep	CDS	23866879	23866964	.	-	2	Parent=Os02t0608400-01
Chr02	irgsp1_rep	three_prime_UTR	23866527	23866878	.	-	.	Parent=Os02t0608400-01
Chr02	irgsp1_rep	mRNA	23868295	23874848	.	-	.	ID=Os02t0608400-02;Name=Os02t0608400-02;Locus_id=Os02g0608400;Note=Similar to Ca2+ binding protein cbp1.;Transcript_evidence=AK120177 (DDBJ%2C Best hit);ORF_evidence=Q0IKM2 (UniProt);InterPro=LETM1-like (IPR011685);NIAS_FLcDNA=J013033F11;TENOR=Os02t0608400-02
Chr02	irgsp1_rep	five_prime_UTR	23874604	23874848	.	-	.	Parent=Os02t0608400-02
Chr02	irgsp1_rep	five_prime_UTR	23873786	23873848	.	-	.	Parent=Os02t0608400-02
Chr02	irgsp1_rep	CDS	23873187	23873785	.	-	0	Parent=Os02t0608400-02
Chr02	irgsp1_rep	CDS	23872768	23873080	.	-	1	Parent=Os02t0608400-02
Chr02	irgsp1_rep	CDS	23872329	23872475	.	-	0	Parent=Os02t0608400-02
Chr02	irgsp1_rep	CDS	23872148	23872236	.	-	0	Parent=Os02t0608400-02
Chr02	irgsp1_rep	CDS	23871965	23872057	.	-	1	Parent=Os02t0608400-02
Chr02	irgsp1_rep	CDS	23870993	23871119	.	-	1	Parent=Os02t0608400-02
Chr02	irgsp1_rep	CDS	23870243	23870307	.	-	0	Parent=Os02t0608400-02
Chr02	irgsp1_rep	CDS	23869977	23870148	.	-	1	Parent=Os02t0608400-02
Chr02	irgsp1_rep	CDS	23868773	23868991	.	-	0	Parent=Os02t0608400-02
Chr02	irgsp1_rep	CDS	23868553	23868600	.	-	0	Parent=Os02t0608400-02
Chr02	irgsp1_rep	CDS	23868295	23868436	.	-	0	Parent=Os02t0608400-02
Chr02	irgsp1_rep	mRNA	23876535	23881702	.	-	.	ID=Os02t0608500-01;Name=Os02t0608500-01;Locus_id=Os02g0608500;Note=Similar to Ankyrin-kinase protein (Fragment).;Transcript_evidence=AK099756 (DDBJ%2C Best hit);ORF_evidence=Q8SAE5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: regulation of signal transduction (GO:0009966),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Ankyrin repeat (IPR002110),Protein kinase-like domain (IPR011009),Integrin-linked protein kinase (IPR016253),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J013093B21;Expression=AK099756;TENOR=Os02t0608500-01;KEGG=Os02t0608500-01
Chr02	irgsp1_rep	five_prime_UTR	23881544	23881702	.	-	.	Parent=Os02t0608500-01
Chr02	irgsp1_rep	CDS	23881043	23881543	.	-	0	Parent=Os02t0608500-01
Chr02	irgsp1_rep	CDS	23880688	23880762	.	-	0	Parent=Os02t0608500-01
Chr02	irgsp1_rep	CDS	23880466	23880571	.	-	0	Parent=Os02t0608500-01
Chr02	irgsp1_rep	CDS	23880026	23880107	.	-	2	Parent=Os02t0608500-01
Chr02	irgsp1_rep	CDS	23879358	23879478	.	-	1	Parent=Os02t0608500-01
Chr02	irgsp1_rep	CDS	23879058	23879137	.	-	0	Parent=Os02t0608500-01
Chr02	irgsp1_rep	CDS	23878881	23878943	.	-	1	Parent=Os02t0608500-01
Chr02	irgsp1_rep	CDS	23878659	23878774	.	-	1	Parent=Os02t0608500-01
Chr02	irgsp1_rep	CDS	23877824	23877909	.	-	2	Parent=Os02t0608500-01
Chr02	irgsp1_rep	CDS	23877508	23877632	.	-	0	Parent=Os02t0608500-01
Chr02	irgsp1_rep	CDS	23876866	23876997	.	-	1	Parent=Os02t0608500-01
Chr02	irgsp1_rep	CDS	23876722	23876743	.	-	1	Parent=Os02t0608500-01
Chr02	irgsp1_rep	three_prime_UTR	23876535	23876721	.	-	.	Parent=Os02t0608500-01
Chr02	irgsp1_rep	mRNA	23876495	23881304	.	-	.	ID=Os02t0608500-02;Name=Os02t0608500-02;Locus_id=Os02g0608500;Note=Similar to Ankyrin-kinase.;Transcript_evidence=AK071922 (DDBJ%2C Best hit);ORF_evidence=Q8SAE5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: regulation of signal transduction (GO:0009966),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Ankyrin repeat (IPR002110),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Integrin-linked protein kinase (IPR016253),Tyrosine-protein kinase%2C catalytic domain (IPR020635),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J013072M01;Expression=AK071922;TENOR=Os02t0608500-02;KEGG=Os02t0608500-02
Chr02	irgsp1_rep	five_prime_UTR	23881304	23881304	.	-	.	Parent=Os02t0608500-02
Chr02	irgsp1_rep	CDS	23881043	23881303	.	-	0	Parent=Os02t0608500-02
Chr02	irgsp1_rep	CDS	23880688	23880762	.	-	0	Parent=Os02t0608500-02
Chr02	irgsp1_rep	CDS	23880466	23880571	.	-	0	Parent=Os02t0608500-02
Chr02	irgsp1_rep	CDS	23880026	23880107	.	-	2	Parent=Os02t0608500-02
Chr02	irgsp1_rep	CDS	23879358	23879478	.	-	1	Parent=Os02t0608500-02
Chr02	irgsp1_rep	CDS	23879058	23879137	.	-	0	Parent=Os02t0608500-02
Chr02	irgsp1_rep	CDS	23878881	23878943	.	-	1	Parent=Os02t0608500-02
Chr02	irgsp1_rep	CDS	23878659	23878774	.	-	1	Parent=Os02t0608500-02
Chr02	irgsp1_rep	CDS	23877824	23877909	.	-	2	Parent=Os02t0608500-02
Chr02	irgsp1_rep	CDS	23877508	23877632	.	-	0	Parent=Os02t0608500-02
Chr02	irgsp1_rep	CDS	23876866	23876997	.	-	1	Parent=Os02t0608500-02
Chr02	irgsp1_rep	CDS	23876722	23876743	.	-	1	Parent=Os02t0608500-02
Chr02	irgsp1_rep	three_prime_UTR	23876495	23876721	.	-	.	Parent=Os02t0608500-02
Chr02	irgsp1_rep	mRNA	23885640	23886555	.	+	.	ID=Os02t0608550-00;Name=Os02t0608550-00;Locus_id=Os02g0608550;Note=Similar to acetolactate synthase/ amino acid binding protein.;Transcript_evidence=CU405934 (DDBJ%2C Best hit);ORF_evidence=NP_001151166.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Biological Process: branched chain family amino acid biosynthetic process (GO:0009082),Molecular Function: acetolactate synthase activity (GO:0003984),Molecular Function: amino acid binding (GO:0016597);InterPro=Amino acid-binding ACT (IPR002912),Acetolactate synthase%2C small subunit (IPR004789);TENOR=Os02t0608550-00;KEGG=Os02t0608550-00
Chr02	irgsp1_rep	five_prime_UTR	23885640	23885802	.	+	.	Parent=Os02t0608550-00
Chr02	irgsp1_rep	CDS	23885803	23886020	.	+	0	Parent=Os02t0608550-00
Chr02	irgsp1_rep	CDS	23886160	23886412	.	+	1	Parent=Os02t0608550-00
Chr02	irgsp1_rep	three_prime_UTR	23886413	23886555	.	+	.	Parent=Os02t0608550-00
Chr02	irgsp1_rep	mRNA	23886678	23890742	.	+	.	ID=Os02t0608600-01;Name=Os02t0608600-01;Locus_id=Os02g0608600;Note=Amino acid-binding ACT domain containing protein.;Transcript_evidence=AK058418 (DDBJ%2C Best hit);ORF_evidence=B8AFH3 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: branched chain family amino acid biosynthetic process (GO:0009082),Molecular Function: acetolactate synthase activity (GO:0003984),Molecular Function: amino acid binding (GO:0016597);InterPro=Amino acid-binding ACT (IPR002912),Acetolactate synthase%2C small subunit (IPR004789),Acetolactate synthase%2C small subunit%2C C-terminal (IPR019455);NIAS_FLcDNA=001-015-D05;Expression=AK058418;TENOR=Os02t0608600-01;KEGG=Os02t0608600-01 (EC:2.2.1.6)
Chr02	irgsp1_rep	five_prime_UTR	23886678	23887224	.	+	.	Parent=Os02t0608600-01
Chr02	irgsp1_rep	CDS	23887225	23887317	.	+	0	Parent=Os02t0608600-01
Chr02	irgsp1_rep	CDS	23887433	23887501	.	+	0	Parent=Os02t0608600-01
Chr02	irgsp1_rep	CDS	23887581	23887664	.	+	0	Parent=Os02t0608600-01
Chr02	irgsp1_rep	CDS	23887750	23887908	.	+	0	Parent=Os02t0608600-01
Chr02	irgsp1_rep	CDS	23888529	23888615	.	+	0	Parent=Os02t0608600-01
Chr02	irgsp1_rep	CDS	23889005	23889109	.	+	0	Parent=Os02t0608600-01
Chr02	irgsp1_rep	CDS	23889186	23889308	.	+	0	Parent=Os02t0608600-01
Chr02	irgsp1_rep	CDS	23889387	23889539	.	+	0	Parent=Os02t0608600-01
Chr02	irgsp1_rep	CDS	23889855	23889920	.	+	0	Parent=Os02t0608600-01
Chr02	irgsp1_rep	CDS	23890346	23890429	.	+	0	Parent=Os02t0608600-01
Chr02	irgsp1_rep	three_prime_UTR	23890430	23890742	.	+	.	Parent=Os02t0608600-01
Chr02	irgsp1_rep	mRNA	23890981	23892922	.	+	.	ID=Os02t0608700-01;Name=Os02t0608700-01;Locus_id=Os02g0608700;Note=Similar to predicted protein.;Transcript_evidence=AK121308 (DDBJ%2C Best hit);ORF_evidence=XP_002452424.1 (RefSeq);NIAS_FLcDNA=J023112A22;Expression=AK121308;TENOR=Os02t0608700-01;KEGG=Os02t0608700-01
Chr02	irgsp1_rep	five_prime_UTR	23890981	23891068	.	+	.	Parent=Os02t0608700-01
Chr02	irgsp1_rep	CDS	23891069	23891233	.	+	0	Parent=Os02t0608700-01
Chr02	irgsp1_rep	three_prime_UTR	23891234	23892922	.	+	.	Parent=Os02t0608700-01
Chr02	irgsp1_rep	mRNA	23893313	23894332	.	+	.	ID=Os02t0608800-00;Name=Os02t0608800-00;Locus_id=Os02g0608800;Note=Hypothetical protein.;Transcript_evidence=tplb0048c08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0608800-00
Chr02	irgsp1_rep	five_prime_UTR	23893313	23893314	.	+	.	Parent=Os02t0608800-00
Chr02	irgsp1_rep	CDS	23893315	23894332	.	+	0	Parent=Os02t0608800-00
Chr02	irgsp1_rep	mRNA	23893258	23894469	.	-	.	ID=Os02t0608801-00;Name=Os02t0608801-00;Locus_id=Os02g0608801;CGSNL Gene Symbol=GELP39;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 39;Oryzabase Gene Symbol Synonym(s)=OsGELP39;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 39;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=E5FYJ8 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);Oryzabase=10989;TENOR=Os02t0608801-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	23893258	23894469	.	-	0	Parent=Os02t0608801-00
Chr02	irgsp1_rep	mRNA	23894736	23898830	.	-	.	ID=Os02t0608900-01;Name=Os02t0608900-01;Locus_id=Os02g0608900;Note=Similar to Epstein-Barr virus (B95-8 isolate) U2-IR2 domain encoding nuclear protein EBNA2%2C complete cds.;Transcript_evidence=AK068690 (DDBJ%2C Best hit);ORF_evidence=B6TN26 (UniProt);NIAS_FLcDNA=J013164G19;Expression=AK068690;TENOR=Os02t0608900-01;KEGG=Os02t0608900-01
Chr02	irgsp1_rep	five_prime_UTR	23898747	23898830	.	-	.	Parent=Os02t0608900-01
Chr02	irgsp1_rep	CDS	23898243	23898746	.	-	0	Parent=Os02t0608900-01
Chr02	irgsp1_rep	CDS	23897898	23897987	.	-	0	Parent=Os02t0608900-01
Chr02	irgsp1_rep	CDS	23896738	23896908	.	-	0	Parent=Os02t0608900-01
Chr02	irgsp1_rep	CDS	23896561	23896655	.	-	0	Parent=Os02t0608900-01
Chr02	irgsp1_rep	CDS	23895623	23895743	.	-	1	Parent=Os02t0608900-01
Chr02	irgsp1_rep	CDS	23894937	23895068	.	-	0	Parent=Os02t0608900-01
Chr02	irgsp1_rep	three_prime_UTR	23894736	23894936	.	-	.	Parent=Os02t0608900-01
Chr02	irgsp1_rep	mRNA	23894669	23898797	.	-	.	ID=Os02t0608900-02;Name=Os02t0608900-02;Locus_id=Os02g0608900;Note=Similar to Epstein-Barr virus (B95-8 isolate) U2-IR2 domain encoding nuclear protein EBNA2%2C complete cds.;Transcript_evidence=AK105867 (DDBJ%2C Best hit);ORF_evidence=B6TN26 (UniProt);NIAS_FLcDNA=001-204-A08;Expression=AK105867;TENOR=Os02t0608900-02;KEGG=Os02t0608900-02
Chr02	irgsp1_rep	five_prime_UTR	23898747	23898797	.	-	.	Parent=Os02t0608900-02
Chr02	irgsp1_rep	CDS	23898243	23898746	.	-	0	Parent=Os02t0608900-02
Chr02	irgsp1_rep	CDS	23897898	23897987	.	-	0	Parent=Os02t0608900-02
Chr02	irgsp1_rep	CDS	23896738	23896908	.	-	0	Parent=Os02t0608900-02
Chr02	irgsp1_rep	CDS	23896561	23896655	.	-	0	Parent=Os02t0608900-02
Chr02	irgsp1_rep	CDS	23895623	23895743	.	-	1	Parent=Os02t0608900-02
Chr02	irgsp1_rep	CDS	23894937	23895068	.	-	0	Parent=Os02t0608900-02
Chr02	irgsp1_rep	three_prime_UTR	23894669	23894936	.	-	.	Parent=Os02t0608900-02
Chr02	irgsp1_rep	mRNA	23900438	23900923	.	-	.	ID=Os02t0609000-01;Name=Os02t0609000-01;Locus_id=Os02g0609000;Note=Hypothetical protein.;Transcript_evidence=AK062391 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-102-C11;Expression=AK062391;TENOR=Os02t0609000-01;KEGG=Os02t0609000-01
Chr02	irgsp1_rep	five_prime_UTR	23900769	23900923	.	-	.	Parent=Os02t0609000-01
Chr02	irgsp1_rep	CDS	23900493	23900768	.	-	0	Parent=Os02t0609000-01
Chr02	irgsp1_rep	three_prime_UTR	23900438	23900492	.	-	.	Parent=Os02t0609000-01
Chr02	irgsp1_rep	mRNA	23904194	23904763	.	+	.	ID=Os02t0609200-00;Name=Os02t0609200-00;Locus_id=Os02g0609200;Note=Similar to Atozi1 (Fragment).;Transcript_evidence=AK377121 (DDBJ);ORF_evidence=A6N1R6 (UniProt);InterPro=Protein of unknown function DUF1138 (IPR009515);TENOR=Os02t0609200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	23904194	23904204	.	+	.	Parent=Os02t0609200-00
Chr02	irgsp1_rep	CDS	23904205	23904307	.	+	0	Parent=Os02t0609200-00
Chr02	irgsp1_rep	CDS	23904621	23904763	.	+	2	Parent=Os02t0609200-00
Chr02	irgsp1_rep	mRNA	23909403	23913492	.	+	.	ID=Os02t0609400-01;Name=Os02t0609400-01;Locus_id=Os02g0609400;Note=Similar to Iron-stress related protein.;Transcript_evidence=AK120252 (DDBJ%2C Best hit);ORF_evidence=B4FBU5 (UniProt);NIAS_FLcDNA=J013045I01;Expression=AK120252;TENOR=Os02t0609400-01;KEGG=Os02t0609400-01
Chr02	irgsp1_rep	five_prime_UTR	23909403	23909524	.	+	.	Parent=Os02t0609400-01
Chr02	irgsp1_rep	CDS	23909525	23909577	.	+	0	Parent=Os02t0609400-01
Chr02	irgsp1_rep	CDS	23910843	23910874	.	+	1	Parent=Os02t0609400-01
Chr02	irgsp1_rep	CDS	23911530	23911721	.	+	2	Parent=Os02t0609400-01
Chr02	irgsp1_rep	CDS	23912541	23912591	.	+	2	Parent=Os02t0609400-01
Chr02	irgsp1_rep	CDS	23912967	23913037	.	+	2	Parent=Os02t0609400-01
Chr02	irgsp1_rep	CDS	23913127	23913204	.	+	0	Parent=Os02t0609400-01
Chr02	irgsp1_rep	three_prime_UTR	23913205	23913492	.	+	.	Parent=Os02t0609400-01
Chr02	irgsp1_rep	mRNA	23909427	23913641	.	+	.	ID=Os02t0609400-02;Name=Os02t0609400-02;Locus_id=Os02g0609400;Note=Similar to Iron-stress related protein.;Transcript_evidence=AK061315 (DDBJ%2C Best hit);ORF_evidence=B4FBU5 (UniProt);NIAS_FLcDNA=006-302-D01;Expression=AK061315;TENOR=Os02t0609400-02;KEGG=Os02t0609400-02
Chr02	irgsp1_rep	five_prime_UTR	23909427	23909524	.	+	.	Parent=Os02t0609400-02
Chr02	irgsp1_rep	CDS	23909525	23909577	.	+	0	Parent=Os02t0609400-02
Chr02	irgsp1_rep	CDS	23910843	23910874	.	+	1	Parent=Os02t0609400-02
Chr02	irgsp1_rep	CDS	23911530	23911721	.	+	2	Parent=Os02t0609400-02
Chr02	irgsp1_rep	CDS	23912541	23912591	.	+	2	Parent=Os02t0609400-02
Chr02	irgsp1_rep	CDS	23912967	23913037	.	+	2	Parent=Os02t0609400-02
Chr02	irgsp1_rep	CDS	23913127	23913204	.	+	0	Parent=Os02t0609400-02
Chr02	irgsp1_rep	three_prime_UTR	23913205	23913641	.	+	.	Parent=Os02t0609400-02
Chr02	irgsp1_rep	mRNA	23914100	23915945	.	-	.	ID=Os02t0609500-01;Name=Os02t0609500-01;Locus_id=Os02g0609500;Note=Hypothetical protein.;Transcript_evidence=AK106881 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-118-F02;Expression=AK106881;TENOR=Os02t0609500-01;KEGG=Os02t0609500-01
Chr02	irgsp1_rep	five_prime_UTR	23914608	23915945	.	-	.	Parent=Os02t0609500-01
Chr02	irgsp1_rep	five_prime_UTR	23914494	23914519	.	-	.	Parent=Os02t0609500-01
Chr02	irgsp1_rep	CDS	23914245	23914493	.	-	0	Parent=Os02t0609500-01
Chr02	irgsp1_rep	three_prime_UTR	23914100	23914244	.	-	.	Parent=Os02t0609500-01
Chr02	irgsp1_rep	mRNA	23929863	23931203	.	-	.	ID=Os02t0609700-01;Name=Os02t0609700-01;Locus_id=Os02g0609700;Note=Non-protein coding transcript.;Transcript_evidence=AK060269 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-005-E01;TENOR=Os02t0609700-01
Chr02	irgsp1_rep	exon	23929863	23931203	.	-	.	Parent=Os02t0609700-01
Chr02	irgsp1_rep	mRNA	23943201	23946456	.	-	.	ID=Os02t0609800-00;Name=Os02t0609800-00;Locus_id=Os02g0609800;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B8AFH5 (UniProt);TENOR=Os02t0609800-00
Chr02	irgsp1_rep	CDS	23946437	23946456	.	-	0	Parent=Os02t0609800-00
Chr02	irgsp1_rep	CDS	23945508	23945595	.	-	1	Parent=Os02t0609800-00
Chr02	irgsp1_rep	CDS	23945071	23945242	.	-	0	Parent=Os02t0609800-00
Chr02	irgsp1_rep	CDS	23944864	23944973	.	-	2	Parent=Os02t0609800-00
Chr02	irgsp1_rep	CDS	23944687	23944750	.	-	0	Parent=Os02t0609800-00
Chr02	irgsp1_rep	CDS	23944520	23944606	.	-	2	Parent=Os02t0609800-00
Chr02	irgsp1_rep	CDS	23943843	23944119	.	-	2	Parent=Os02t0609800-00
Chr02	irgsp1_rep	CDS	23943201	23943231	.	-	1	Parent=Os02t0609800-00
Chr02	irgsp1_rep	mRNA	23952926	23954302	.	+	.	ID=Os02t0609900-00;Name=Os02t0609900-00;Locus_id=Os02g0609900;Oryzabase Gene Name Synonym(s)=Leucine-rich repeat receptor-like kinase;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=AK371857 (DDBJ);ORF_evidence=NP_001047396.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);Oryzabase=19081;TENOR=Os02t0609900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	23952926	23954290	.	+	0	Parent=Os02t0609900-00
Chr02	irgsp1_rep	three_prime_UTR	23954291	23954302	.	+	.	Parent=Os02t0609900-00
Chr02	irgsp1_rep	mRNA	23966075	23967661	.	+	.	ID=Os02t0610000-00;Name=Os02t0610000-00;Locus_id=Os02g0610000;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=GU593320 (DDBJ);ORF_evidence=NP_001047397.2 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);TENOR=Os02t0610000-00
Chr02	irgsp1_rep	CDS	23966075	23967661	.	+	0	Parent=Os02t0610000-00
Chr02	irgsp1_rep	mRNA	23980588	23984884	.	-	.	ID=Os02t0610400-01;Name=Os02t0610400-01;Locus_id=Os02g0610400;Note=Lupus La protein family protein.;Transcript_evidence=AK102477 (DDBJ%2C Best hit);ORF_evidence=Q01IC5 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Cellular Component: nucleus (GO:0005634),Cellular Component: ribonucleoprotein complex (GO:0030529),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723);InterPro=RNA recognition motif domain (IPR000504),Lupus La protein (IPR002344),RNA-binding protein Lupus La (IPR006630),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Nucleotide-binding%2C alpha-beta plait (IPR012677),RNA-binding motif (IPR014886);NIAS_FLcDNA=J033094I09;Expression=AK102477;TENOR=Os02t0610400-01;KEGG=Os02t0610400-01
Chr02	irgsp1_rep	five_prime_UTR	23984783	23984884	.	-	.	Parent=Os02t0610400-01
Chr02	irgsp1_rep	CDS	23984720	23984782	.	-	0	Parent=Os02t0610400-01
Chr02	irgsp1_rep	CDS	23984519	23984597	.	-	0	Parent=Os02t0610400-01
Chr02	irgsp1_rep	CDS	23984250	23984402	.	-	2	Parent=Os02t0610400-01
Chr02	irgsp1_rep	CDS	23983759	23983901	.	-	2	Parent=Os02t0610400-01
Chr02	irgsp1_rep	CDS	23983295	23983443	.	-	0	Parent=Os02t0610400-01
Chr02	irgsp1_rep	CDS	23982795	23982875	.	-	1	Parent=Os02t0610400-01
Chr02	irgsp1_rep	CDS	23982311	23982707	.	-	1	Parent=Os02t0610400-01
Chr02	irgsp1_rep	CDS	23981624	23981771	.	-	0	Parent=Os02t0610400-01
Chr02	irgsp1_rep	CDS	23981317	23981395	.	-	2	Parent=Os02t0610400-01
Chr02	irgsp1_rep	CDS	23980798	23980909	.	-	1	Parent=Os02t0610400-01
Chr02	irgsp1_rep	three_prime_UTR	23980588	23980797	.	-	.	Parent=Os02t0610400-01
Chr02	irgsp1_rep	mRNA	23989803	23991271	.	+	.	ID=Os02t0610500-01;Name=Os02t0610500-01;Locus_id=Os02g0610500;RAP-DB Gene Symbol Synonym(s)=OsCOL4%2C OsD%2C OsBBX5%2C OsCOL4/OsD%2C OsCCT06;RAP-DB Gene Name Synonym(s)=CONSTANS-like gene 4%2C B-box-containing protein 5%2C CCT domain-containing gene 6%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 6%2C CCT domain protein 6;Oryzabase Gene Symbol Synonym(s)=OsCOL4%2C OsD%2C OsBBX5%2C OsCOL4/OsD%2C OsCCT06%2C COL4%2C BBX5%2C CCT06;Oryzabase Gene Name Synonym(s)=CONSTANS-like gene 4%2C B-box-containing protein 5%2C CCT domain-containing gene 6%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 6%2C CCT domain protein 6;Note=CO-like protein containing two B-box zinc finger domains and one CCT domain%2C Constitutive flowering repressor;Transcript_evidence=AK058536 (Genbank),AK100097 (Genbank);ORF_evidence=Q6K9C5 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C B-box (IPR000315),CCT domain (IPR010402);NIAS_FLcDNA=001-017-B01,J023004D12;Manual Curation=July 16%2C 2010;Literature_PMID=20409004;Oryzabase=10298;TENOR=Os02t0610500-01
Chr02	irgsp1_rep	five_prime_UTR	23989803	23989903	.	+	.	Parent=Os02t0610500-01
Chr02	irgsp1_rep	CDS	23989904	23990587	.	+	0	Parent=Os02t0610500-01
Chr02	irgsp1_rep	CDS	23990669	23990983	.	+	0	Parent=Os02t0610500-01
Chr02	irgsp1_rep	three_prime_UTR	23990984	23991271	.	+	.	Parent=Os02t0610500-01
Chr02	irgsp1_rep	mRNA	23992509	23996356	.	-	.	ID=Os02t0610600-01;Name=Os02t0610600-01;Locus_id=Os02g0610600;CGSNL Gene Symbol=RSZP23;Oryzabase Gene Symbol Synonym(s)=Os-RSZ23%2C OsRSZ23%2C Os-RSZp23%2C OsRSZp23;Oryzabase Gene Name Synonym(s)=RS domain with zinc knuckle protein 23%2C RSZ subfamily protein 23;Note=Similar to 9G8-like SR protein (RSZp22 splicing factor).;Transcript_evidence=AK104726 (DDBJ%2C Best hit),AK060088 (DDBJ%2C Best hit),AK099572 (DDBJ%2C Best hit);ORF_evidence=B6U4H0 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA recognition motif domain (IPR000504),Zinc finger%2C CCHC-type (IPR001878),Nucleotide-binding%2C alpha-beta plait (IPR012677),Zinc finger%2C CCHC retroviral-type (IPR013084);NIAS_FLcDNA=001-038-B09,006-306-G11,J013035H21;Oryzabase=22737;Expression=AK104726;TENOR=Os02t0610600-01;KEGG=Os02t0610600-01
Chr02	irgsp1_rep	five_prime_UTR	23996246	23996356	.	-	.	Parent=Os02t0610600-01
Chr02	irgsp1_rep	five_prime_UTR	23996027	23996039	.	-	.	Parent=Os02t0610600-01
Chr02	irgsp1_rep	CDS	23995938	23996026	.	-	0	Parent=Os02t0610600-01
Chr02	irgsp1_rep	CDS	23994783	23994871	.	-	1	Parent=Os02t0610600-01
Chr02	irgsp1_rep	CDS	23993636	23993894	.	-	2	Parent=Os02t0610600-01
Chr02	irgsp1_rep	CDS	23992818	23992983	.	-	1	Parent=Os02t0610600-01
Chr02	irgsp1_rep	three_prime_UTR	23992509	23992817	.	-	.	Parent=Os02t0610600-01
Chr02	irgsp1_rep	mRNA	23998182	24000801	.	-	.	ID=Os02t0610700-01;Name=Os02t0610700-01;Locus_id=Os02g0610700;Note=Chlorophyll a/b binding protein domain domain containing protein.;Transcript_evidence=AK059205 (DDBJ%2C Best hit);ORF_evidence=B8AFD5 (UniProt);InterPro=Chlorophyll a/b binding protein domain (IPR023329);NIAS_FLcDNA=001-024-B01;Expression=AK059205;TENOR=Os02t0610700-01;KEGG=Os02t0610700-01
Chr02	irgsp1_rep	five_prime_UTR	24000710	24000801	.	-	.	Parent=Os02t0610700-01
Chr02	irgsp1_rep	CDS	24000585	24000709	.	-	0	Parent=Os02t0610700-01
Chr02	irgsp1_rep	CDS	23999867	23999951	.	-	1	Parent=Os02t0610700-01
Chr02	irgsp1_rep	CDS	23999401	23999514	.	-	0	Parent=Os02t0610700-01
Chr02	irgsp1_rep	CDS	23998604	23998705	.	-	0	Parent=Os02t0610700-01
Chr02	irgsp1_rep	CDS	23998411	23998455	.	-	0	Parent=Os02t0610700-01
Chr02	irgsp1_rep	three_prime_UTR	23998182	23998410	.	-	.	Parent=Os02t0610700-01
Chr02	irgsp1_rep	mRNA	23998075	24000723	.	-	.	ID=Os02t0610700-02;Name=Os02t0610700-02;Locus_id=Os02g0610700;Note=Conserved hypothetical protein.;Transcript_evidence=AK100281 (DDBJ%2C Best hit);ORF_evidence=B8AFD5 (UniProt);NIAS_FLcDNA=J023074H03;TENOR=Os02t0610700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	24000071	24000723	.	-	.	Parent=Os02t0610700-02
Chr02	irgsp1_rep	CDS	23999861	24000070	.	-	0	Parent=Os02t0610700-02
Chr02	irgsp1_rep	three_prime_UTR	23998075	23999860	.	-	.	Parent=Os02t0610700-02
Chr02	irgsp1_rep	mRNA	24000931	24003142	.	+	.	ID=Os02t0610800-01;Name=Os02t0610800-01;Locus_id=Os02g0610800;Note=Protein of unknown function DUF1092 family protein.;Transcript_evidence=AK099736 (DDBJ%2C Best hit);ORF_evidence=NP_001150851.1 (RefSeq);InterPro=Protein of unknown function DUF1092 (IPR009472);NIAS_FLcDNA=J013090G20;Expression=AK099736;TENOR=Os02t0610800-01;KEGG=Os02t0610800-01
Chr02	irgsp1_rep	five_prime_UTR	24000931	24001010	.	+	.	Parent=Os02t0610800-01
Chr02	irgsp1_rep	CDS	24001011	24001785	.	+	0	Parent=Os02t0610800-01
Chr02	irgsp1_rep	CDS	24001927	24002070	.	+	2	Parent=Os02t0610800-01
Chr02	irgsp1_rep	CDS	24002703	24002962	.	+	2	Parent=Os02t0610800-01
Chr02	irgsp1_rep	three_prime_UTR	24002963	24003142	.	+	.	Parent=Os02t0610800-01
Chr02	irgsp1_rep	mRNA	24005560	24006350	.	+	.	ID=Os02t0610851-00;Name=Os02t0610851-00;Locus_id=Os02g0610851;Note=Hypothetical gene.;Transcript_evidence=BT085356 (DDBJ);ORF_evidence=GeneMark;TENOR=Os02t0610851-00;KEGG=Os02t0610851-00
Chr02	irgsp1_rep	five_prime_UTR	24005560	24005706	.	+	.	Parent=Os02t0610851-00
Chr02	irgsp1_rep	CDS	24005707	24005922	.	+	0	Parent=Os02t0610851-00
Chr02	irgsp1_rep	three_prime_UTR	24005923	24006350	.	+	.	Parent=Os02t0610851-00
Chr02	irgsp1_rep	mRNA	24021764	24022413	.	+	.	ID=Os02t0610950-01;Name=Os02t0610950-01;Locus_id=Os02g0610950;RAP-DB Gene Symbol Synonym(s)=OsTAS3a;RAP-DB Gene Name Synonym(s)=Oryza sativa Trans-Acting Short RNA precursor 3a;Note=Trans-acting small interfering RNA%2C Target of miR390%2C Regulation of ARF (auxin response factor) gene;Transcript_evidence=EU293144;ORF_evidence=NONE;Manual Curation=November 2%2C 2018;Literature_PMID=30373525,23449645
Chr02	irgsp1_rep	exon	24021764	24022413	.	+	.	Parent=Os02t0610950-01
Chr02	irgsp1_rep	mRNA	24029894	24032288	.	-	.	ID=Os02t0611000-01;Name=Os02t0611000-01;Locus_id=Os02g0611000;Note=Hypothetical gene.;Transcript_evidence=AK107511 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-129-E11;Expression=AK107511;TENOR=Os02t0611000-01;KEGG=Os02t0611000-01
Chr02	irgsp1_rep	five_prime_UTR	24032288	24032288	.	-	.	Parent=Os02t0611000-01
Chr02	irgsp1_rep	CDS	24032066	24032287	.	-	0	Parent=Os02t0611000-01
Chr02	irgsp1_rep	three_prime_UTR	24031312	24032065	.	-	.	Parent=Os02t0611000-01
Chr02	irgsp1_rep	three_prime_UTR	24029894	24030906	.	-	.	Parent=Os02t0611000-01
Chr02	irgsp1_rep	mRNA	24025156	24032275	.	-	.	ID=Os02t0611000-02;Name=Os02t0611000-02;Locus_id=Os02g0611000;Note=Conserved hypothetical protein.;Transcript_evidence=AK108611 (DDBJ%2C Best hit);ORF_evidence=Q6K646 (UniProt);NIAS_FLcDNA=002-147-A09;TENOR=Os02t0611000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	24031927	24032275	.	-	.	Parent=Os02t0611000-02
Chr02	irgsp1_rep	five_prime_UTR	24030120	24030218	.	-	.	Parent=Os02t0611000-02
Chr02	irgsp1_rep	five_prime_UTR	24025990	24026137	.	-	.	Parent=Os02t0611000-02
Chr02	irgsp1_rep	CDS	24025771	24025989	.	-	0	Parent=Os02t0611000-02
Chr02	irgsp1_rep	three_prime_UTR	24025156	24025678	.	-	.	Parent=Os02t0611000-02
Chr02	irgsp1_rep	mRNA	24045244	24048276	.	+	.	ID=Os02t0611200-01;Name=Os02t0611200-01;Locus_id=Os02g0611200;RAP-DB Gene Symbol Synonym(s)=SAMDC2%2C SamDC2%2C AdoMetDC2%2C OsSAMDC2;RAP-DB Gene Name Synonym(s)=S-ADENOSYLMETHIONINE DECARBOXYLASE 2%2C S-adenosylmethionine decarboxylase 2;CGSNL Gene Symbol=SAMDC2;CGSNL Gene Name=S-ADENOSYLMETHIONINE DECARBOXYLASE 2;Oryzabase Gene Symbol Synonym(s)=SamDC2%2C AdoMetDC2%2C OsSAMDC2;Oryzabase Gene Name Synonym(s)=S-adenosylmethionine decarboxylase 2;Note=S-adenosylmethionine decarboxylase%2C Polyamine biosynthesis%2C Abiotic stress;Transcript_evidence=AJ251899 (Genbank),AK070259 (Genbank);ORF_evidence=Q9SC67 (UniProt),Q6K9B8 (UniProt);GO=Biological Process: spermine biosynthetic process (GO:0006597),Biological Process: spermidine biosynthetic process (GO:0008295),Molecular Function: adenosylmethionine decarboxylase activity (GO:0004014);InterPro=S-adenosylmethionine decarboxylase (IPR001985),S-adenosylmethionine decarboxylase%2C core (IPR016067),S-adenosylmethionine decarboxylase%2C conserved site (IPR018166),S-adenosylmethionine decarboxylase subgroup (IPR018167);NIAS_FLcDNA=J023041P13;Manual Curation=June 19%2C 2009;Literature_PMID=11139406,14727183;Oryzabase=13861;TENOR=Os02t0611200-01
Chr02	irgsp1_rep	five_prime_UTR	24045244	24045456	.	+	.	Parent=Os02t0611200-01
Chr02	irgsp1_rep	five_prime_UTR	24046418	24046574	.	+	.	Parent=Os02t0611200-01
Chr02	irgsp1_rep	five_prime_UTR	24046666	24046844	.	+	.	Parent=Os02t0611200-01
Chr02	irgsp1_rep	CDS	24046845	24048032	.	+	0	Parent=Os02t0611200-01
Chr02	irgsp1_rep	three_prime_UTR	24048033	24048276	.	+	.	Parent=Os02t0611200-01
Chr02	irgsp1_rep	mRNA	24046436	24048276	.	+	.	ID=Os02t0611200-02;Name=Os02t0611200-02;Locus_id=Os02g0611200;CGSNL Gene Symbol=SAMDC2;CGSNL Gene Name=S-ADENOSYLMETHIONINE DECARBOXYLASE 2;Oryzabase Gene Symbol Synonym(s)=SamDC2%2C AdoMetDC2%2C OsSAMDC2;Oryzabase Gene Name Synonym(s)=S-adenosylmethionine decarboxylase 2;Note=Similar to S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50) (AdoMetDC) (SamDC) (Induced stolen tip protein TUB13) [Contains: S- adenosylmethionine decarboxylase alpha chain%3B S-adenosylmethionine decarboxylase beta chain].;Transcript_evidence=AK062133 (DDBJ%2C Best hit);ORF_evidence=Q9SC67 (UniProt);GO=Biological Process: spermine biosynthetic process (GO:0006597),Biological Process: spermidine biosynthetic process (GO:0008295),Molecular Function: adenosylmethionine decarboxylase activity (GO:0004014);InterPro=S-adenosylmethionine decarboxylase (IPR001985),S-adenosylmethionine decarboxylase%2C core (IPR016067),S-adenosylmethionine decarboxylase%2C conserved site (IPR018166),S-adenosylmethionine decarboxylase subgroup (IPR018167);NIAS_FLcDNA=001-045-E08;Oryzabase=13861;Expression=AK062133;TENOR=Os02t0611200-02;KEGG=Os02t0611200-02 (EC:4.1.1.50)
Chr02	irgsp1_rep	five_prime_UTR	24046436	24046574	.	+	.	Parent=Os02t0611200-02
Chr02	irgsp1_rep	five_prime_UTR	24046666	24046844	.	+	.	Parent=Os02t0611200-02
Chr02	irgsp1_rep	CDS	24046845	24048032	.	+	0	Parent=Os02t0611200-02
Chr02	irgsp1_rep	three_prime_UTR	24048033	24048276	.	+	.	Parent=Os02t0611200-02
Chr02	irgsp1_rep	mRNA	24047063	24048294	.	+	.	ID=Os02t0611200-03;Name=Os02t0611200-03;Locus_id=Os02g0611200;CGSNL Gene Symbol=SAMDC2;CGSNL Gene Name=S-ADENOSYLMETHIONINE DECARBOXYLASE 2;Oryzabase Gene Symbol Synonym(s)=SamDC2%2C AdoMetDC2%2C OsSAMDC2;Oryzabase Gene Name Synonym(s)=S-adenosylmethionine decarboxylase 2;Note=Similar to S-adenosylmethionine decarboxylase 2.;Transcript_evidence=AK059503 (DDBJ%2C Best hit);ORF_evidence=Q9SC67 (UniProt);GO=Biological Process: spermine biosynthetic process (GO:0006597),Biological Process: spermidine biosynthetic process (GO:0008295),Molecular Function: adenosylmethionine decarboxylase activity (GO:0004014);InterPro=S-adenosylmethionine decarboxylase (IPR001985),S-adenosylmethionine decarboxylase%2C core (IPR016067),S-adenosylmethionine decarboxylase subgroup (IPR018167);NIAS_FLcDNA=001-029-A07;Oryzabase=13861;Expression=AK059503;TENOR=Os02t0611200-03;KEGG=Os02t0611200-03 (EC:4.1.1.50)
Chr02	irgsp1_rep	five_prime_UTR	24047063	24047063	.	+	.	Parent=Os02t0611200-03
Chr02	irgsp1_rep	CDS	24047064	24048032	.	+	0	Parent=Os02t0611200-03
Chr02	irgsp1_rep	three_prime_UTR	24048033	24048294	.	+	.	Parent=Os02t0611200-03
Chr02	irgsp1_rep	mRNA	24046420	24048224	.	-	.	ID=Os02t0611250-00;Name=Os02t0611250-00;Locus_id=Os02g0611250;Note=Hypothetical gene.;Transcript_evidence=tplb0038f05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0611250-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	24047919	24048224	.	-	.	Parent=Os02t0611250-00
Chr02	irgsp1_rep	CDS	24047601	24047918	.	-	0	Parent=Os02t0611250-00
Chr02	irgsp1_rep	three_prime_UTR	24046709	24047600	.	-	.	Parent=Os02t0611250-00
Chr02	irgsp1_rep	three_prime_UTR	24046420	24046632	.	-	.	Parent=Os02t0611250-00
Chr02	irgsp1_rep	mRNA	24048829	24058147	.	-	.	ID=Os02t0611300-01;Name=Os02t0611300-01;Locus_id=Os02g0611300;CGSNL Gene Symbol=SDG736;CGSNL Gene Name=SET DOMAIN GROUP PROTEIN 736;Oryzabase Gene Symbol Synonym(s)=SDG736%2C OsSET9;Oryzabase Gene Name Synonym(s)=SET Domain Group Protein736%2C SET protein 9;Note=Zinc finger%2C PHD-type domain containing protein.;Transcript_evidence=AK067083 (DDBJ%2C Best hit);ORF_evidence=F2D049 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C PHD-type%2C conserved site (IPR019786);NIAS_FLcDNA=J013095J16;Oryzabase=11166;TENOR=Os02t0611300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	24058048	24058147	.	-	.	Parent=Os02t0611300-01
Chr02	irgsp1_rep	CDS	24057568	24058047	.	-	0	Parent=Os02t0611300-01
Chr02	irgsp1_rep	CDS	24056088	24056234	.	-	0	Parent=Os02t0611300-01
Chr02	irgsp1_rep	CDS	24054732	24054893	.	-	0	Parent=Os02t0611300-01
Chr02	irgsp1_rep	CDS	24053751	24053765	.	-	0	Parent=Os02t0611300-01
Chr02	irgsp1_rep	three_prime_UTR	24053715	24053750	.	-	.	Parent=Os02t0611300-01
Chr02	irgsp1_rep	three_prime_UTR	24052891	24053004	.	-	.	Parent=Os02t0611300-01
Chr02	irgsp1_rep	three_prime_UTR	24052672	24052771	.	-	.	Parent=Os02t0611300-01
Chr02	irgsp1_rep	three_prime_UTR	24051991	24052084	.	-	.	Parent=Os02t0611300-01
Chr02	irgsp1_rep	three_prime_UTR	24051413	24051491	.	-	.	Parent=Os02t0611300-01
Chr02	irgsp1_rep	three_prime_UTR	24050460	24050631	.	-	.	Parent=Os02t0611300-01
Chr02	irgsp1_rep	three_prime_UTR	24050282	24050362	.	-	.	Parent=Os02t0611300-01
Chr02	irgsp1_rep	three_prime_UTR	24048829	24049513	.	-	.	Parent=Os02t0611300-01
Chr02	irgsp1_rep	mRNA	24059319	24062693	.	+	.	ID=Os02t0611400-01;Name=Os02t0611400-01;Locus_id=Os02g0611400;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK101310 (DDBJ%2C Best hit);ORF_evidence=B8AFD8 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033033O21;Expression=AK101310;TENOR=Os02t0611400-01;KEGG=Os02t0611400-01
Chr02	irgsp1_rep	five_prime_UTR	24059319	24059372	.	+	.	Parent=Os02t0611400-01
Chr02	irgsp1_rep	CDS	24059373	24060365	.	+	0	Parent=Os02t0611400-01
Chr02	irgsp1_rep	CDS	24061192	24062250	.	+	0	Parent=Os02t0611400-01
Chr02	irgsp1_rep	three_prime_UTR	24062251	24062693	.	+	.	Parent=Os02t0611400-01
Chr02	irgsp1_rep	mRNA	24063225	24066510	.	-	.	ID=Os02t0611450-00;Name=Os02t0611450-00;Locus_id=Os02g0611450;Note=Similar to Enhancer of rudimentary.;Transcript_evidence=CT835385 (DDBJ%2C Best hit);ORF_evidence=B6T273 (UniProt);GO=Biological Process: cell cycle (GO:0007049);InterPro=Enhancer of rudimentary (IPR000781);TENOR=Os02t0611450-00;KEGG=Os02t0611450-00
Chr02	irgsp1_rep	five_prime_UTR	24066432	24066510	.	-	.	Parent=Os02t0611450-00
Chr02	irgsp1_rep	five_prime_UTR	24066126	24066424	.	-	.	Parent=Os02t0611450-00
Chr02	irgsp1_rep	five_prime_UTR	24063857	24064393	.	-	.	Parent=Os02t0611450-00
Chr02	irgsp1_rep	CDS	24063674	24063856	.	-	0	Parent=Os02t0611450-00
Chr02	irgsp1_rep	three_prime_UTR	24063225	24063673	.	-	.	Parent=Os02t0611450-00
Chr02	irgsp1_rep	mRNA	24068339	24074731	.	-	.	ID=Os02t0611500-01;Name=Os02t0611500-01;Locus_id=Os02g0611500;Note=Similar to Eukaryotic initiation factor-like protein.;Transcript_evidence=AK072083 (DDBJ%2C Best hit);ORF_evidence=Q84PB3 (UniProt);GO=Biological Process: RNA metabolic process (GO:0016070),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=MIF4G-like%2C type 3 (IPR003890),Initiation factor eIF-4 gamma%2C MA3 (IPR003891),MIF4-like%2C type 1/2/3 (IPR016021),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013118N03;Expression=AK072083;TENOR=Os02t0611500-01;KEGG=Os02t0611500-01
Chr02	irgsp1_rep	five_prime_UTR	24074675	24074731	.	-	.	Parent=Os02t0611500-01
Chr02	irgsp1_rep	CDS	24074516	24074674	.	-	0	Parent=Os02t0611500-01
Chr02	irgsp1_rep	CDS	24073731	24073802	.	-	0	Parent=Os02t0611500-01
Chr02	irgsp1_rep	CDS	24072757	24072852	.	-	0	Parent=Os02t0611500-01
Chr02	irgsp1_rep	CDS	24072420	24072632	.	-	0	Parent=Os02t0611500-01
Chr02	irgsp1_rep	CDS	24071785	24071882	.	-	0	Parent=Os02t0611500-01
Chr02	irgsp1_rep	CDS	24071343	24071430	.	-	1	Parent=Os02t0611500-01
Chr02	irgsp1_rep	CDS	24070912	24071262	.	-	0	Parent=Os02t0611500-01
Chr02	irgsp1_rep	CDS	24070440	24070682	.	-	0	Parent=Os02t0611500-01
Chr02	irgsp1_rep	CDS	24068951	24069973	.	-	0	Parent=Os02t0611500-01
Chr02	irgsp1_rep	three_prime_UTR	24068339	24068950	.	-	.	Parent=Os02t0611500-01
Chr02	irgsp1_rep	mRNA	24068962	24074675	.	+	.	ID=Os02t0611650-00;Name=Os02t0611650-00;Locus_id=Os02g0611650;Note=Hypothetical protein.;Transcript_evidence=tplb0022f02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0611650-00
Chr02	irgsp1_rep	five_prime_UTR	24068962	24069163	.	+	.	Parent=Os02t0611650-00
Chr02	irgsp1_rep	CDS	24069164	24069406	.	+	0	Parent=Os02t0611650-00
Chr02	irgsp1_rep	three_prime_UTR	24069407	24069978	.	+	.	Parent=Os02t0611650-00
Chr02	irgsp1_rep	three_prime_UTR	24070445	24070684	.	+	.	Parent=Os02t0611650-00
Chr02	irgsp1_rep	three_prime_UTR	24070913	24071261	.	+	.	Parent=Os02t0611650-00
Chr02	irgsp1_rep	three_prime_UTR	24071342	24071430	.	+	.	Parent=Os02t0611650-00
Chr02	irgsp1_rep	three_prime_UTR	24071785	24071887	.	+	.	Parent=Os02t0611650-00
Chr02	irgsp1_rep	three_prime_UTR	24072425	24072605	.	+	.	Parent=Os02t0611650-00
Chr02	irgsp1_rep	three_prime_UTR	24072705	24072843	.	+	.	Parent=Os02t0611650-00
Chr02	irgsp1_rep	three_prime_UTR	24073723	24073804	.	+	.	Parent=Os02t0611650-00
Chr02	irgsp1_rep	three_prime_UTR	24074524	24074675	.	+	.	Parent=Os02t0611650-00
Chr02	irgsp1_rep	mRNA	24080704	24084615	.	+	.	ID=Os02t0611800-01;Name=Os02t0611800-01;Locus_id=Os02g0611800;CGSNL Gene Symbol=HCT2;CGSNL Gene Name=HYDROXYCINNAMOYLTRANSFERASE 2;Oryzabase Gene Symbol Synonym(s)=OsHCT2%2C HCT;Oryzabase Gene Name Synonym(s)=Hydroxycinnamoyltransferase 2%2C hydroxycinnamoyl CoA:shikimate/quinate hydroxycinnamoyl transferase 2;Note=Similar to Hydroxyanthranilate hydroxycinnamoyltransferase 3.;Transcript_evidence=AK060705 (DDBJ%2C Best hit),AK104319 (DDBJ%2C Best hit);ORF_evidence=Q7XXP1 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=001-030-G09,001-025-E04;Oryzabase=10357;TENOR=Os02t0611800-01
Chr02	irgsp1_rep	five_prime_UTR	24080704	24080810	.	+	.	Parent=Os02t0611800-01
Chr02	irgsp1_rep	CDS	24080936	24081361	.	+	0	Parent=Os02t0611800-01
Chr02	irgsp1_rep	CDS	24083433	24084335	.	+	0	Parent=Os02t0611800-01
Chr02	irgsp1_rep	three_prime_UTR	24084336	24084615	.	+	.	Parent=Os02t0611800-01
Chr02	irgsp1_rep	mRNA	24090864	24094103	.	+	.	ID=Os02t0612000-01;Name=Os02t0612000-01;Locus_id=Os02g0612000;Note=Similar to GrpE protein homolog.;Transcript_evidence=AK240781 (DDBJ%2C Best hit);ORF_evidence=B9F116 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: adenyl-nucleotide exchange factor activity (GO:0000774),Molecular Function: protein homodimerization activity (GO:0042803),Molecular Function: chaperone binding (GO:0051087);InterPro=GrpE nucleotide exchange factor (IPR000740),GrpE nucleotide exchange factor%2C head (IPR009012),GrpE nucleotide exchange factor%2C coiled-coil (IPR013805);NIAS_FLcDNA=J053076E22;TENOR=Os02t0612000-01;KEGG=Os02t0612000-01
Chr02	irgsp1_rep	five_prime_UTR	24090864	24090871	.	+	.	Parent=Os02t0612000-01
Chr02	irgsp1_rep	CDS	24090872	24090958	.	+	0	Parent=Os02t0612000-01
Chr02	irgsp1_rep	CDS	24091138	24091191	.	+	0	Parent=Os02t0612000-01
Chr02	irgsp1_rep	CDS	24092954	24093457	.	+	0	Parent=Os02t0612000-01
Chr02	irgsp1_rep	CDS	24093701	24093943	.	+	0	Parent=Os02t0612000-01
Chr02	irgsp1_rep	three_prime_UTR	24093944	24094103	.	+	.	Parent=Os02t0612000-01
Chr02	irgsp1_rep	mRNA	24095882	24097710	.	+	.	ID=Os02t0612100-01;Name=Os02t0612100-01;Locus_id=Os02g0612100;Note=Phospholipid methyltransferase family protein.;Transcript_evidence=AK242155 (DDBJ%2C Best hit);ORF_evidence=NP_565246.1 (RefSeq);GO=Biological Process: phospholipid metabolic process (GO:0006644),Molecular Function: N-methyltransferase activity (GO:0008170);InterPro=Phospholipid methyltransferase (IPR007318);NIAS_FLcDNA=J075154O16;TENOR=Os02t0612100-01;KEGG=Os02t0612100-01
Chr02	irgsp1_rep	five_prime_UTR	24095882	24095920	.	+	.	Parent=Os02t0612100-01
Chr02	irgsp1_rep	CDS	24095921	24096177	.	+	0	Parent=Os02t0612100-01
Chr02	irgsp1_rep	CDS	24097329	24097578	.	+	1	Parent=Os02t0612100-01
Chr02	irgsp1_rep	three_prime_UTR	24097579	24097710	.	+	.	Parent=Os02t0612100-01
Chr02	irgsp1_rep	mRNA	24098151	24099882	.	-	.	ID=Os02t0612200-01;Name=Os02t0612200-01;Locus_id=Os02g0612200;Note=NB-ARC domain containing protein.;Transcript_evidence=AK110995 (DDBJ%2C Best hit);ORF_evidence=B8AFE1 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);NIAS_FLcDNA=002-174-E04;Expression=AK110995;TENOR=Os02t0612200-01;KEGG=Os02t0612200-01
Chr02	irgsp1_rep	five_prime_UTR	24099867	24099882	.	-	.	Parent=Os02t0612200-01
Chr02	irgsp1_rep	CDS	24098295	24099866	.	-	0	Parent=Os02t0612200-01
Chr02	irgsp1_rep	three_prime_UTR	24098151	24098294	.	-	.	Parent=Os02t0612200-01
Chr02	irgsp1_rep	mRNA	24100174	24103481	.	-	.	ID=Os02t0612300-01;Name=Os02t0612300-01;Locus_id=Os02g0612300;CGSNL Gene Symbol=DU3;CGSNL Gene Name=DULL ENDOSPERM 3;Oryzabase Gene Symbol Synonym(s)=du3%2C OsCBP20%2C OsCBP20/du3%2C CBP20;Oryzabase Gene Name Synonym(s)=dull endosperm3%2C dull endosperm 3%2C dull endosperm-3%2C dull 3%2C cap-binding protein 20;Note=Similar to Nuclear cap binding protein subunit 2 (20 kDa nuclear cap binding protein) (NCBP 20 kDa subunit) (CBP20).;Transcript_evidence=AK061262 (DDBJ%2C Best hit),AK069360 (DDBJ%2C Best hit),AK101546 (DDBJ%2C Best hit);ORF_evidence=Q84L14 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=006-212-C02,J023013F19,J033048L13;Oryzabase=88;TENOR=Os02t0612300-01
Chr02	irgsp1_rep	five_prime_UTR	24103299	24103481	.	-	.	Parent=Os02t0612300-01
Chr02	irgsp1_rep	CDS	24103281	24103298	.	-	0	Parent=Os02t0612300-01
Chr02	irgsp1_rep	CDS	24102951	24103174	.	-	0	Parent=Os02t0612300-01
Chr02	irgsp1_rep	CDS	24101795	24101933	.	-	1	Parent=Os02t0612300-01
Chr02	irgsp1_rep	CDS	24101673	24101706	.	-	0	Parent=Os02t0612300-01
Chr02	irgsp1_rep	CDS	24101335	24101433	.	-	2	Parent=Os02t0612300-01
Chr02	irgsp1_rep	CDS	24100774	24100827	.	-	2	Parent=Os02t0612300-01
Chr02	irgsp1_rep	CDS	24100611	24100696	.	-	2	Parent=Os02t0612300-01
Chr02	irgsp1_rep	CDS	24100438	24100515	.	-	0	Parent=Os02t0612300-01
Chr02	irgsp1_rep	three_prime_UTR	24100174	24100437	.	-	.	Parent=Os02t0612300-01
Chr02	irgsp1_rep	mRNA	24132135	24132736	.	+	.	ID=Os02t0612600-01;Name=Os02t0612600-01;Locus_id=Os02g0612600;Note=Hypothetical protein.;Transcript_evidence=AK062519 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-104-C11;TENOR=Os02t0612600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	24132135	24132596	.	+	0	Parent=Os02t0612600-01
Chr02	irgsp1_rep	three_prime_UTR	24132597	24132736	.	+	.	Parent=Os02t0612600-01
Chr02	irgsp1_rep	mRNA	24133183	24139373	.	-	.	ID=Os02t0612700-01;Name=Os02t0612700-01;Locus_id=Os02g0612700;Note=BTB domain containing protein.;Transcript_evidence=AK288216 (DDBJ%2C Best hit);ORF_evidence=Q01I89 (UniProt);GO=Biological Process: potassium ion transport (GO:0006813),Cellular Component: voltage-gated potassium channel complex (GO:0008076),Cellular Component: membrane (GO:0016020),Molecular Function: voltage-gated potassium channel activity (GO:0005249),Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),Potassium channel%2C voltage dependent%2C Kv%2C tetramerisation (IPR003131),Quinoprotein amine dehydrogenase%2C beta chain-like (IPR011044),BTB/POZ fold (IPR011333),WD40/YVTN repeat-like-containing domain (IPR015943);NIAS_FLcDNA=J090011C22;TENOR=Os02t0612700-01;KEGG=Os02t0612700-01
Chr02	irgsp1_rep	five_prime_UTR	24136350	24139373	.	-	.	Parent=Os02t0612700-01
Chr02	irgsp1_rep	CDS	24134973	24136349	.	-	0	Parent=Os02t0612700-01
Chr02	irgsp1_rep	three_prime_UTR	24133183	24134972	.	-	.	Parent=Os02t0612700-01
Chr02	irgsp1_rep	mRNA	24139922	24146705	.	-	.	ID=Os02t0612800-01;Name=Os02t0612800-01;Locus_id=Os02g0612800;Oryzabase Gene Symbol Synonym(s)=BIP135;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 135%2C BRI1-interacting protein 135%2C brassinosteroid receptor kinase-interacting protein 135;Note=AT hook%2C DNA-binding%2C conserved site domain containing protein.;Transcript_evidence=AK072455 (DDBJ%2C Best hit);ORF_evidence=Q761Y0 (UniProt);GO=Molecular Function: DNA binding (GO:0003677);InterPro=AT hook%2C DNA-binding motif (IPR017956);NIAS_FLcDNA=J023114I24;Oryzabase=13684;Expression=AK072455;TENOR=Os02t0612800-01;KEGG=Os02t0612800-01
Chr02	irgsp1_rep	five_prime_UTR	24146444	24146705	.	-	.	Parent=Os02t0612800-01
Chr02	irgsp1_rep	CDS	24146345	24146443	.	-	0	Parent=Os02t0612800-01
Chr02	irgsp1_rep	CDS	24145630	24145833	.	-	0	Parent=Os02t0612800-01
Chr02	irgsp1_rep	CDS	24145360	24145541	.	-	0	Parent=Os02t0612800-01
Chr02	irgsp1_rep	CDS	24144783	24144909	.	-	1	Parent=Os02t0612800-01
Chr02	irgsp1_rep	CDS	24144489	24144680	.	-	0	Parent=Os02t0612800-01
Chr02	irgsp1_rep	CDS	24144067	24144117	.	-	0	Parent=Os02t0612800-01
Chr02	irgsp1_rep	CDS	24143915	24143987	.	-	0	Parent=Os02t0612800-01
Chr02	irgsp1_rep	CDS	24143415	24143818	.	-	2	Parent=Os02t0612800-01
Chr02	irgsp1_rep	CDS	24142919	24143029	.	-	0	Parent=Os02t0612800-01
Chr02	irgsp1_rep	CDS	24142300	24142382	.	-	0	Parent=Os02t0612800-01
Chr02	irgsp1_rep	CDS	24141866	24141917	.	-	1	Parent=Os02t0612800-01
Chr02	irgsp1_rep	CDS	24141642	24141710	.	-	0	Parent=Os02t0612800-01
Chr02	irgsp1_rep	CDS	24141505	24141539	.	-	0	Parent=Os02t0612800-01
Chr02	irgsp1_rep	CDS	24140840	24140923	.	-	1	Parent=Os02t0612800-01
Chr02	irgsp1_rep	CDS	24140261	24140762	.	-	1	Parent=Os02t0612800-01
Chr02	irgsp1_rep	three_prime_UTR	24139922	24140260	.	-	.	Parent=Os02t0612800-01
Chr02	irgsp1_rep	mRNA	24139771	24140041	.	-	.	ID=Os02t0612800-02;Name=Os02t0612800-02;Locus_id=Os02g0612800;Oryzabase Gene Symbol Synonym(s)=BIP135;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 135%2C BRI1-interacting protein 135%2C brassinosteroid receptor kinase-interacting protein 135;Note=Non-protein coding transcript.;Transcript_evidence=AK060629 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-026-H10;Oryzabase=13684;TENOR=Os02t0612800-02
Chr02	irgsp1_rep	exon	24139771	24140041	.	-	.	Parent=Os02t0612800-02
Chr02	irgsp1_rep	mRNA	24152119	24153073	.	-	.	ID=Os02t0612900-01;Name=Os02t0612900-01;Locus_id=Os02g0612900;Note=Similar to Temperature stress-induced lipocalin.;Transcript_evidence=AK071108 (DDBJ%2C Best hit);ORF_evidence=C6YXK7 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Lipocalin/cytosolic fatty-acid binding protein domain (IPR000566),Calycin-like (IPR011038),Calycin (IPR012674),Lipocalin%2C ApoD type (IPR022271),Lipocalin conserved site (IPR022272);NIAS_FLcDNA=J023078B21;Expression=AK071108;TENOR=Os02t0612900-01;KEGG=Os02t0612900-01
Chr02	irgsp1_rep	five_prime_UTR	24152893	24153073	.	-	.	Parent=Os02t0612900-01
Chr02	irgsp1_rep	CDS	24152305	24152892	.	-	0	Parent=Os02t0612900-01
Chr02	irgsp1_rep	three_prime_UTR	24152119	24152304	.	-	.	Parent=Os02t0612900-01
Chr02	irgsp1_rep	mRNA	24155718	24156467	.	-	.	ID=Os02t0612950-00;Name=Os02t0612950-00;Locus_id=Os02g0612950;Note=Non-protein coding transcript.;Transcript_evidence=FP094363 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0612950-00
Chr02	irgsp1_rep	exon	24156307	24156467	.	-	.	Parent=Os02t0612950-00
Chr02	irgsp1_rep	exon	24156122	24156208	.	-	.	Parent=Os02t0612950-00
Chr02	irgsp1_rep	exon	24155718	24155864	.	-	.	Parent=Os02t0612950-00
Chr02	irgsp1_rep	mRNA	24158318	24163085	.	+	.	ID=Os02t0613000-01;Name=Os02t0613000-01;Locus_id=Os02g0613000;Note=EF-Hand type domain containing protein.;Transcript_evidence=AK066756 (DDBJ%2C Best hit);ORF_evidence=NP_001147122.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J013075K23;Expression=AK066756;TENOR=Os02t0613000-01;KEGG=Os02t0613000-01
Chr02	irgsp1_rep	five_prime_UTR	24158318	24158334	.	+	.	Parent=Os02t0613000-01
Chr02	irgsp1_rep	CDS	24158335	24158565	.	+	0	Parent=Os02t0613000-01
Chr02	irgsp1_rep	CDS	24158684	24158789	.	+	0	Parent=Os02t0613000-01
Chr02	irgsp1_rep	CDS	24159049	24159116	.	+	2	Parent=Os02t0613000-01
Chr02	irgsp1_rep	CDS	24159224	24159447	.	+	0	Parent=Os02t0613000-01
Chr02	irgsp1_rep	CDS	24159828	24159911	.	+	1	Parent=Os02t0613000-01
Chr02	irgsp1_rep	CDS	24160790	24161003	.	+	1	Parent=Os02t0613000-01
Chr02	irgsp1_rep	CDS	24161849	24162025	.	+	0	Parent=Os02t0613000-01
Chr02	irgsp1_rep	CDS	24162114	24162233	.	+	0	Parent=Os02t0613000-01
Chr02	irgsp1_rep	CDS	24162461	24162672	.	+	0	Parent=Os02t0613000-01
Chr02	irgsp1_rep	CDS	24162829	24162829	.	+	1	Parent=Os02t0613000-01
Chr02	irgsp1_rep	three_prime_UTR	24162830	24163085	.	+	.	Parent=Os02t0613000-01
Chr02	irgsp1_rep	mRNA	24163521	24165713	.	-	.	ID=Os02t0613100-00;Name=Os02t0613100-00;Locus_id=Os02g0613100;Note=Hypothetical conserved gene.;Transcript_evidence=EU961734 (DDBJ);ORF_evidence=NP_197526.4 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);TENOR=Os02t0613100-00;KEGG=Os02t0613100-00
Chr02	irgsp1_rep	CDS	24165447	24165713	.	-	0	Parent=Os02t0613100-00
Chr02	irgsp1_rep	CDS	24165160	24165350	.	-	0	Parent=Os02t0613100-00
Chr02	irgsp1_rep	CDS	24164729	24165083	.	-	1	Parent=Os02t0613100-00
Chr02	irgsp1_rep	CDS	24163553	24164248	.	-	0	Parent=Os02t0613100-00
Chr02	irgsp1_rep	three_prime_UTR	24163521	24163552	.	-	.	Parent=Os02t0613100-00
Chr02	irgsp1_rep	mRNA	24163522	24165085	.	+	.	ID=Os02t0613150-00;Name=Os02t0613150-00;Locus_id=Os02g0613150;Note=Hypothetical protein.;Transcript_evidence=tplb0040n23 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0613150-00
Chr02	irgsp1_rep	five_prime_UTR	24163522	24163955	.	+	.	Parent=Os02t0613150-00
Chr02	irgsp1_rep	CDS	24163956	24164234	.	+	0	Parent=Os02t0613150-00
Chr02	irgsp1_rep	CDS	24164711	24165085	.	+	0	Parent=Os02t0613150-00
Chr02	irgsp1_rep	mRNA	24169409	24174245	.	-	.	ID=Os02t0613200-01;Name=Os02t0613200-01;Locus_id=Os02g0613200;Note=Hypothetical conserved gene.;Transcript_evidence=AK064869 (DDBJ%2C Best hit);ORF_evidence=A2X756 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C cysteine-containing subtype (IPR006553);NIAS_FLcDNA=J013000J01;TENOR=Os02t0613200-01
Chr02	irgsp1_rep	five_prime_UTR	24173977	24174245	.	-	.	Parent=Os02t0613200-01
Chr02	irgsp1_rep	five_prime_UTR	24173271	24173425	.	-	.	Parent=Os02t0613200-01
Chr02	irgsp1_rep	CDS	24173061	24173270	.	-	0	Parent=Os02t0613200-01
Chr02	irgsp1_rep	CDS	24172847	24172975	.	-	0	Parent=Os02t0613200-01
Chr02	irgsp1_rep	CDS	24172277	24172484	.	-	0	Parent=Os02t0613200-01
Chr02	irgsp1_rep	CDS	24171833	24171979	.	-	2	Parent=Os02t0613200-01
Chr02	irgsp1_rep	CDS	24171564	24171638	.	-	2	Parent=Os02t0613200-01
Chr02	irgsp1_rep	CDS	24171292	24171363	.	-	2	Parent=Os02t0613200-01
Chr02	irgsp1_rep	CDS	24171023	24171094	.	-	2	Parent=Os02t0613200-01
Chr02	irgsp1_rep	CDS	24170821	24170892	.	-	2	Parent=Os02t0613200-01
Chr02	irgsp1_rep	CDS	24170412	24170483	.	-	2	Parent=Os02t0613200-01
Chr02	irgsp1_rep	CDS	24169840	24169911	.	-	2	Parent=Os02t0613200-01
Chr02	irgsp1_rep	CDS	24169409	24169447	.	-	2	Parent=Os02t0613200-01
Chr02	irgsp1_rep	mRNA	24166923	24174194	.	-	.	ID=Os02t0613200-02;Name=Os02t0613200-02;Locus_id=Os02g0613200;Note=Similar to regulatory subunit.;Transcript_evidence=AK098974 (DDBJ%2C Best hit);ORF_evidence=NP_001147302.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=J013091J20;Expression=AK098974;TENOR=Os02t0613200-02;KEGG=Os02t0613200-02
Chr02	irgsp1_rep	five_prime_UTR	24173977	24174194	.	-	.	Parent=Os02t0613200-02
Chr02	irgsp1_rep	five_prime_UTR	24173271	24173425	.	-	.	Parent=Os02t0613200-02
Chr02	irgsp1_rep	CDS	24173061	24173270	.	-	0	Parent=Os02t0613200-02
Chr02	irgsp1_rep	CDS	24172847	24172975	.	-	0	Parent=Os02t0613200-02
Chr02	irgsp1_rep	CDS	24172277	24172484	.	-	0	Parent=Os02t0613200-02
Chr02	irgsp1_rep	CDS	24171833	24171979	.	-	2	Parent=Os02t0613200-02
Chr02	irgsp1_rep	CDS	24171564	24171638	.	-	2	Parent=Os02t0613200-02
Chr02	irgsp1_rep	CDS	24171292	24171363	.	-	2	Parent=Os02t0613200-02
Chr02	irgsp1_rep	CDS	24171023	24171094	.	-	2	Parent=Os02t0613200-02
Chr02	irgsp1_rep	CDS	24170821	24170892	.	-	2	Parent=Os02t0613200-02
Chr02	irgsp1_rep	CDS	24170412	24170483	.	-	2	Parent=Os02t0613200-02
Chr02	irgsp1_rep	CDS	24169840	24169911	.	-	2	Parent=Os02t0613200-02
Chr02	irgsp1_rep	CDS	24169376	24169447	.	-	2	Parent=Os02t0613200-02
Chr02	irgsp1_rep	CDS	24168668	24168811	.	-	2	Parent=Os02t0613200-02
Chr02	irgsp1_rep	CDS	24168254	24168325	.	-	2	Parent=Os02t0613200-02
Chr02	irgsp1_rep	CDS	24167611	24167757	.	-	2	Parent=Os02t0613200-02
Chr02	irgsp1_rep	CDS	24167321	24167505	.	-	2	Parent=Os02t0613200-02
Chr02	irgsp1_rep	three_prime_UTR	24166923	24167320	.	-	.	Parent=Os02t0613200-02
Chr02	irgsp1_rep	mRNA	24166863	24174147	.	-	.	ID=Os02t0613200-03;Name=Os02t0613200-03;Locus_id=Os02g0613200;Note=Similar to regulatory subunit.;Transcript_evidence=AK098853 (DDBJ%2C Best hit);ORF_evidence=NP_001147302.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=J013000H15;Expression=AK098853;TENOR=Os02t0613200-03;KEGG=Os02t0613200-03
Chr02	irgsp1_rep	five_prime_UTR	24173977	24174147	.	-	.	Parent=Os02t0613200-03
Chr02	irgsp1_rep	five_prime_UTR	24173271	24173425	.	-	.	Parent=Os02t0613200-03
Chr02	irgsp1_rep	CDS	24173061	24173270	.	-	0	Parent=Os02t0613200-03
Chr02	irgsp1_rep	CDS	24172847	24172975	.	-	0	Parent=Os02t0613200-03
Chr02	irgsp1_rep	CDS	24172277	24172484	.	-	0	Parent=Os02t0613200-03
Chr02	irgsp1_rep	CDS	24171833	24171979	.	-	2	Parent=Os02t0613200-03
Chr02	irgsp1_rep	CDS	24171564	24171638	.	-	2	Parent=Os02t0613200-03
Chr02	irgsp1_rep	CDS	24171292	24171363	.	-	2	Parent=Os02t0613200-03
Chr02	irgsp1_rep	CDS	24171023	24171094	.	-	2	Parent=Os02t0613200-03
Chr02	irgsp1_rep	CDS	24170821	24170892	.	-	2	Parent=Os02t0613200-03
Chr02	irgsp1_rep	CDS	24170412	24170483	.	-	2	Parent=Os02t0613200-03
Chr02	irgsp1_rep	CDS	24169840	24169911	.	-	2	Parent=Os02t0613200-03
Chr02	irgsp1_rep	CDS	24169376	24169447	.	-	2	Parent=Os02t0613200-03
Chr02	irgsp1_rep	CDS	24168668	24168811	.	-	2	Parent=Os02t0613200-03
Chr02	irgsp1_rep	CDS	24168254	24168325	.	-	2	Parent=Os02t0613200-03
Chr02	irgsp1_rep	CDS	24167611	24167757	.	-	2	Parent=Os02t0613200-03
Chr02	irgsp1_rep	CDS	24167321	24167505	.	-	2	Parent=Os02t0613200-03
Chr02	irgsp1_rep	three_prime_UTR	24166863	24167320	.	-	.	Parent=Os02t0613200-03
Chr02	irgsp1_rep	mRNA	24166843	24174101	.	-	.	ID=Os02t0613200-04;Name=Os02t0613200-04;Locus_id=Os02g0613200;Note=Similar to regulatory subunit.;Transcript_evidence=AK065051 (DDBJ%2C Best hit);ORF_evidence=NP_001147302.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=J013001I18;TENOR=Os02t0613200-04
Chr02	irgsp1_rep	five_prime_UTR	24173977	24174101	.	-	.	Parent=Os02t0613200-04
Chr02	irgsp1_rep	five_prime_UTR	24173271	24173425	.	-	.	Parent=Os02t0613200-04
Chr02	irgsp1_rep	CDS	24173061	24173270	.	-	0	Parent=Os02t0613200-04
Chr02	irgsp1_rep	CDS	24172847	24172975	.	-	0	Parent=Os02t0613200-04
Chr02	irgsp1_rep	CDS	24172277	24172484	.	-	0	Parent=Os02t0613200-04
Chr02	irgsp1_rep	CDS	24171833	24171979	.	-	2	Parent=Os02t0613200-04
Chr02	irgsp1_rep	CDS	24171564	24171638	.	-	2	Parent=Os02t0613200-04
Chr02	irgsp1_rep	CDS	24171292	24171363	.	-	2	Parent=Os02t0613200-04
Chr02	irgsp1_rep	CDS	24171023	24171094	.	-	2	Parent=Os02t0613200-04
Chr02	irgsp1_rep	CDS	24170821	24170892	.	-	2	Parent=Os02t0613200-04
Chr02	irgsp1_rep	CDS	24170412	24170483	.	-	2	Parent=Os02t0613200-04
Chr02	irgsp1_rep	CDS	24169840	24169911	.	-	2	Parent=Os02t0613200-04
Chr02	irgsp1_rep	CDS	24169376	24169447	.	-	2	Parent=Os02t0613200-04
Chr02	irgsp1_rep	CDS	24168668	24168811	.	-	2	Parent=Os02t0613200-04
Chr02	irgsp1_rep	CDS	24168254	24168325	.	-	2	Parent=Os02t0613200-04
Chr02	irgsp1_rep	CDS	24167611	24167757	.	-	2	Parent=Os02t0613200-04
Chr02	irgsp1_rep	CDS	24167321	24167505	.	-	2	Parent=Os02t0613200-04
Chr02	irgsp1_rep	three_prime_UTR	24166843	24167320	.	-	.	Parent=Os02t0613200-04
Chr02	irgsp1_rep	mRNA	24167321	24173310	.	+	.	ID=Os02t0613300-00;Name=Os02t0613300-00;Locus_id=Os02g0613300;Note=Hypothetical protein.;Transcript_evidence=tplb0025e18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0613300-00
Chr02	irgsp1_rep	five_prime_UTR	24167321	24167498	.	+	.	Parent=Os02t0613300-00
Chr02	irgsp1_rep	five_prime_UTR	24167602	24167786	.	+	.	Parent=Os02t0613300-00
Chr02	irgsp1_rep	five_prime_UTR	24168630	24168813	.	+	.	Parent=Os02t0613300-00
Chr02	irgsp1_rep	five_prime_UTR	24169379	24169446	.	+	.	Parent=Os02t0613300-00
Chr02	irgsp1_rep	five_prime_UTR	24169839	24169967	.	+	.	Parent=Os02t0613300-00
Chr02	irgsp1_rep	five_prime_UTR	24170794	24170891	.	+	.	Parent=Os02t0613300-00
Chr02	irgsp1_rep	five_prime_UTR	24171022	24171091	.	+	.	Parent=Os02t0613300-00
Chr02	irgsp1_rep	five_prime_UTR	24171289	24171363	.	+	.	Parent=Os02t0613300-00
Chr02	irgsp1_rep	five_prime_UTR	24171564	24171640	.	+	.	Parent=Os02t0613300-00
Chr02	irgsp1_rep	five_prime_UTR	24171829	24171968	.	+	.	Parent=Os02t0613300-00
Chr02	irgsp1_rep	five_prime_UTR	24172265	24172415	.	+	.	Parent=Os02t0613300-00
Chr02	irgsp1_rep	CDS	24172416	24172490	.	+	0	Parent=Os02t0613300-00
Chr02	irgsp1_rep	CDS	24172853	24172966	.	+	0	Parent=Os02t0613300-00
Chr02	irgsp1_rep	CDS	24173049	24173093	.	+	0	Parent=Os02t0613300-00
Chr02	irgsp1_rep	three_prime_UTR	24173094	24173310	.	+	.	Parent=Os02t0613300-00
Chr02	irgsp1_rep	mRNA	24178420	24181293	.	-	.	ID=Os02t0613400-01;Name=Os02t0613400-01;Locus_id=Os02g0613400;Note=Similar to CGS1 mRNA stability 1.;Transcript_evidence=AK108796 (DDBJ%2C Best hit);ORF_evidence=Q0KKQ1 (UniProt);NIAS_FLcDNA=002-151-C01;TENOR=Os02t0613400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	24181293	24181293	.	-	.	Parent=Os02t0613400-01
Chr02	irgsp1_rep	CDS	24181233	24181292	.	-	0	Parent=Os02t0613400-01
Chr02	irgsp1_rep	CDS	24180929	24181144	.	-	0	Parent=Os02t0613400-01
Chr02	irgsp1_rep	CDS	24179736	24179996	.	-	0	Parent=Os02t0613400-01
Chr02	irgsp1_rep	CDS	24178719	24179069	.	-	0	Parent=Os02t0613400-01
Chr02	irgsp1_rep	three_prime_UTR	24178420	24178718	.	-	.	Parent=Os02t0613400-01
Chr02	irgsp1_rep	mRNA	24196224	24201250	.	+	.	ID=Os02t0613600-01;Name=Os02t0613600-01;Locus_id=Os02g0613600;Note=Similar to Trafficking protein particle complex protein 2 (Sedlin) (MBP-1 interacting protein-2A) (MIP-2A).;Transcript_evidence=AK071179 (DDBJ%2C Best hit);ORF_evidence=B6STC6 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888),Cellular Component: intracellular (GO:0005622);InterPro=Sedlin (IPR006722),Longin-like (IPR011012);NIAS_FLcDNA=J023084J18;Expression=AK071179;TENOR=Os02t0613600-01;KEGG=Os02t0613600-01
Chr02	irgsp1_rep	five_prime_UTR	24196224	24196342	.	+	.	Parent=Os02t0613600-01
Chr02	irgsp1_rep	five_prime_UTR	24197158	24197162	.	+	.	Parent=Os02t0613600-01
Chr02	irgsp1_rep	CDS	24197163	24197243	.	+	0	Parent=Os02t0613600-01
Chr02	irgsp1_rep	CDS	24198478	24198563	.	+	0	Parent=Os02t0613600-01
Chr02	irgsp1_rep	CDS	24198690	24198750	.	+	1	Parent=Os02t0613600-01
Chr02	irgsp1_rep	CDS	24199049	24199135	.	+	0	Parent=Os02t0613600-01
Chr02	irgsp1_rep	CDS	24200858	24200950	.	+	0	Parent=Os02t0613600-01
Chr02	irgsp1_rep	three_prime_UTR	24200951	24201250	.	+	.	Parent=Os02t0613600-01
Chr02	irgsp1_rep	mRNA	24223305	24228759	.	+	.	ID=Os02t0613900-01;Name=Os02t0613900-01;Locus_id=Os02g0613900;Note=Similar to Adenine phosphoribosyltransferase 2 (EC 2.4.2.7) (APRT).;Transcript_evidence=AK070784 (DDBJ%2C Best hit);ORF_evidence=NP_001149656.1 (RefSeq);GO=Biological Process: adenine salvage (GO:0006168),Biological Process: nucleoside metabolic process (GO:0009116),Cellular Component: cytoplasm (GO:0005737),Molecular Function: adenine phosphoribosyltransferase activity (GO:0003999);InterPro=Phosphoribosyltransferase (IPR000836),Adenine phosphoribosyl transferase (IPR005764);NIAS_FLcDNA=J023064G04;Expression=AK070784;TENOR=Os02t0613900-01;KEGG=Os02t0613900-01 (EC:2.4.2.7)
Chr02	irgsp1_rep	five_prime_UTR	24223305	24223385	.	+	.	Parent=Os02t0613900-01
Chr02	irgsp1_rep	CDS	24223386	24223393	.	+	0	Parent=Os02t0613900-01
Chr02	irgsp1_rep	CDS	24223469	24223623	.	+	1	Parent=Os02t0613900-01
Chr02	irgsp1_rep	CDS	24223713	24223823	.	+	2	Parent=Os02t0613900-01
Chr02	irgsp1_rep	CDS	24225367	24225459	.	+	2	Parent=Os02t0613900-01
Chr02	irgsp1_rep	CDS	24225937	24226086	.	+	2	Parent=Os02t0613900-01
Chr02	irgsp1_rep	CDS	24227219	24227277	.	+	2	Parent=Os02t0613900-01
Chr02	irgsp1_rep	CDS	24228232	24228297	.	+	0	Parent=Os02t0613900-01
Chr02	irgsp1_rep	three_prime_UTR	24228298	24228313	.	+	.	Parent=Os02t0613900-01
Chr02	irgsp1_rep	three_prime_UTR	24228464	24228759	.	+	.	Parent=Os02t0613900-01
Chr02	irgsp1_rep	mRNA	24223305	24228713	.	+	.	ID=Os02t0613900-02;Name=Os02t0613900-02;Locus_id=Os02g0613900;Note=Similar to adenine phosphoribosyltransferase 2.;Transcript_evidence=AK069606 (DDBJ%2C Best hit);ORF_evidence=Q67G15 (UniProt);GO=Biological Process: adenine salvage (GO:0006168),Biological Process: nucleoside metabolic process (GO:0009116),Cellular Component: cytoplasm (GO:0005737),Molecular Function: adenine phosphoribosyltransferase activity (GO:0003999);InterPro=Phosphoribosyltransferase (IPR000836),Adenine phosphoribosyl transferase (IPR005764);NIAS_FLcDNA=J023024J22;Expression=AK069606;TENOR=Os02t0613900-02;KEGG=Os02t0613900-02 (EC:2.4.2.7)
Chr02	irgsp1_rep	five_prime_UTR	24223305	24223385	.	+	.	Parent=Os02t0613900-02
Chr02	irgsp1_rep	CDS	24223386	24223623	.	+	0	Parent=Os02t0613900-02
Chr02	irgsp1_rep	CDS	24223713	24223823	.	+	2	Parent=Os02t0613900-02
Chr02	irgsp1_rep	CDS	24225367	24225459	.	+	2	Parent=Os02t0613900-02
Chr02	irgsp1_rep	CDS	24225937	24226086	.	+	2	Parent=Os02t0613900-02
Chr02	irgsp1_rep	CDS	24227219	24227277	.	+	2	Parent=Os02t0613900-02
Chr02	irgsp1_rep	CDS	24228232	24228297	.	+	0	Parent=Os02t0613900-02
Chr02	irgsp1_rep	three_prime_UTR	24228298	24228313	.	+	.	Parent=Os02t0613900-02
Chr02	irgsp1_rep	three_prime_UTR	24228464	24228713	.	+	.	Parent=Os02t0613900-02
Chr02	irgsp1_rep	mRNA	24235668	24239738	.	+	.	ID=Os02t0614100-01;Name=Os02t0614100-01;Locus_id=Os02g0614100;RAP-DB Gene Symbol Synonym(s)=BC14%2C OsNST1;RAP-DB Gene Name Synonym(s)=BRITTLE CULM 14%2C Oryza sativa Nucleotide Sugar Transporter1%2C brittle culm 14;CGSNL Gene Symbol=BC14;CGSNL Gene Name=BRITTLE CULM 14;Oryzabase Gene Symbol Synonym(s)=BC14%2C OsNST1;Oryzabase Gene Name Synonym(s)=brittle culm 14%2C Oryza sativa nucleotide sugar transport 1%2C nucleotide sugar transport 1%2C Nucleotide Sugar Transporter1;Note=Golgi-localized nucleotide sugar transporter%2C UDP-glucose transporter%2C Modulation of cell wall biosynthesis and plant growth;Transcript_evidence=AK066917;ORF_evidence=Q6K5Y4;InterPro=Sugar phosphate transporter domain (IPR004853);NIAS_FLcDNA=J013089M04;Manual Curation=May 25%2C 2017;Literature_PMID=21383162;Oryzabase=9875;Expression=AK066917;TENOR=Os02t0614100-01;KEGG=Os02t0614100-01;Subcellular location=Golgi apparatus (GO:0005794)
Chr02	irgsp1_rep	five_prime_UTR	24235668	24235870	.	+	.	Parent=Os02t0614100-01
Chr02	irgsp1_rep	CDS	24235871	24236027	.	+	0	Parent=Os02t0614100-01
Chr02	irgsp1_rep	CDS	24236881	24236957	.	+	2	Parent=Os02t0614100-01
Chr02	irgsp1_rep	CDS	24237300	24237458	.	+	0	Parent=Os02t0614100-01
Chr02	irgsp1_rep	CDS	24237561	24237694	.	+	0	Parent=Os02t0614100-01
Chr02	irgsp1_rep	CDS	24238071	24238201	.	+	1	Parent=Os02t0614100-01
Chr02	irgsp1_rep	CDS	24238286	24238330	.	+	2	Parent=Os02t0614100-01
Chr02	irgsp1_rep	CDS	24238421	24238518	.	+	2	Parent=Os02t0614100-01
Chr02	irgsp1_rep	CDS	24238752	24238859	.	+	0	Parent=Os02t0614100-01
Chr02	irgsp1_rep	CDS	24238947	24239003	.	+	0	Parent=Os02t0614100-01
Chr02	irgsp1_rep	CDS	24239472	24239546	.	+	0	Parent=Os02t0614100-01
Chr02	irgsp1_rep	three_prime_UTR	24239547	24239738	.	+	.	Parent=Os02t0614100-01
Chr02	irgsp1_rep	mRNA	24240092	24242558	.	-	.	ID=Os02t0614200-01;Name=Os02t0614200-01;Locus_id=Os02g0614200;Note=Conserved hypothetical protein.;Transcript_evidence=AK061591 (DDBJ%2C Best hit);ORF_evidence=B8AFF4 (UniProt);NIAS_FLcDNA=001-022-B05;Expression=AK061591;TENOR=Os02t0614200-01;KEGG=Os02t0614200-01
Chr02	irgsp1_rep	five_prime_UTR	24242429	24242558	.	-	.	Parent=Os02t0614200-01
Chr02	irgsp1_rep	CDS	24242210	24242428	.	-	0	Parent=Os02t0614200-01
Chr02	irgsp1_rep	CDS	24240310	24240525	.	-	0	Parent=Os02t0614200-01
Chr02	irgsp1_rep	three_prime_UTR	24240092	24240309	.	-	.	Parent=Os02t0614200-01
Chr02	irgsp1_rep	mRNA	24242211	24242651	.	+	.	ID=Os02t0614250-00;Name=Os02t0614250-00;Locus_id=Os02g0614250;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os02t0614250-00;KEGG=Os02t0614250-00
Chr02	irgsp1_rep	CDS	24242211	24242651	.	+	0	Parent=Os02t0614250-00
Chr02	irgsp1_rep	mRNA	24264204	24266297	.	+	.	ID=Os02t0614300-01;Name=Os02t0614300-01;Locus_id=Os02g0614300;CGSNL Gene Symbol=PLT3;CGSNL Gene Name=PLETHORA 3;Oryzabase Gene Symbol Synonym(s)=OsPLT3%2C AP2/EREBP#018%2C AP2/EREBP18%2C BBM2%2C OsBBM2;Oryzabase Gene Name Synonym(s)=Plethora 3%2C APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 18%2C BABY BOOM2%2C BABY BOOM 2;Note=Similar to ANT-like protein.;Transcript_evidence=AK112070 (DDBJ%2C Best hit);ORF_evidence=A2X767 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=001-120-D07;Oryzabase=10466;Expression=AK112070;TENOR=Os02t0614300-01;KEGG=Os02t0614300-01
Chr02	irgsp1_rep	five_prime_UTR	24264204	24264205	.	+	.	Parent=Os02t0614300-01
Chr02	irgsp1_rep	CDS	24264206	24264240	.	+	0	Parent=Os02t0614300-01
Chr02	irgsp1_rep	CDS	24264328	24264378	.	+	1	Parent=Os02t0614300-01
Chr02	irgsp1_rep	CDS	24264605	24264681	.	+	1	Parent=Os02t0614300-01
Chr02	irgsp1_rep	CDS	24265175	24265977	.	+	2	Parent=Os02t0614300-01
Chr02	irgsp1_rep	three_prime_UTR	24265978	24266297	.	+	.	Parent=Os02t0614300-01
Chr02	irgsp1_rep	mRNA	24265064	24265694	.	-	.	ID=Os02t0614325-00;Name=Os02t0614325-00;Locus_id=Os02g0614325;Note=Hypothetical protein.;Transcript_evidence=EU949353 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0614325-00
Chr02	irgsp1_rep	five_prime_UTR	24265693	24265694	.	-	.	Parent=Os02t0614325-00
Chr02	irgsp1_rep	CDS	24265150	24265692	.	-	0	Parent=Os02t0614325-00
Chr02	irgsp1_rep	three_prime_UTR	24265064	24265149	.	-	.	Parent=Os02t0614325-00
Chr02	irgsp1_rep	mRNA	24268167	24269784	.	+	.	ID=Os02t0614400-01;Name=Os02t0614400-01;Locus_id=Os02g0614400;Note=Peptidase aspartic%2C active site domain containing protein.;Transcript_evidence=AK071805 (DDBJ%2C Best hit);ORF_evidence=NP_001149306.1 (RefSeq);InterPro=Uncharacterised protein family Ycf60 (IPR019109);NIAS_FLcDNA=J023108N22;Expression=AK071805;TENOR=Os02t0614400-01;KEGG=Os02t0614400-01
Chr02	irgsp1_rep	five_prime_UTR	24268167	24268262	.	+	.	Parent=Os02t0614400-01
Chr02	irgsp1_rep	five_prime_UTR	24268466	24268497	.	+	.	Parent=Os02t0614400-01
Chr02	irgsp1_rep	CDS	24268498	24268651	.	+	0	Parent=Os02t0614400-01
Chr02	irgsp1_rep	CDS	24268996	24269615	.	+	2	Parent=Os02t0614400-01
Chr02	irgsp1_rep	three_prime_UTR	24269616	24269784	.	+	.	Parent=Os02t0614400-01
Chr02	irgsp1_rep	mRNA	24270254	24273674	.	-	.	ID=Os02t0614500-01;Name=Os02t0614500-01;Locus_id=Os02g0614500;Note=Protein of unknown function DUF250 domain containing protein.;Transcript_evidence=AK072518 (DDBJ%2C Best hit);ORF_evidence=NP_001149060.1 (RefSeq);InterPro=Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=J023130L12;Expression=AK072518;TENOR=Os02t0614500-01;KEGG=Os02t0614500-01
Chr02	irgsp1_rep	five_prime_UTR	24273514	24273674	.	-	.	Parent=Os02t0614500-01
Chr02	irgsp1_rep	five_prime_UTR	24272854	24272883	.	-	.	Parent=Os02t0614500-01
Chr02	irgsp1_rep	CDS	24272724	24272853	.	-	0	Parent=Os02t0614500-01
Chr02	irgsp1_rep	CDS	24272384	24272568	.	-	2	Parent=Os02t0614500-01
Chr02	irgsp1_rep	CDS	24272101	24272301	.	-	0	Parent=Os02t0614500-01
Chr02	irgsp1_rep	CDS	24271521	24271682	.	-	0	Parent=Os02t0614500-01
Chr02	irgsp1_rep	CDS	24270475	24270792	.	-	0	Parent=Os02t0614500-01
Chr02	irgsp1_rep	three_prime_UTR	24270254	24270474	.	-	.	Parent=Os02t0614500-01
Chr02	irgsp1_rep	mRNA	24270254	24273511	.	-	.	ID=Os02t0614500-02;Name=Os02t0614500-02;Locus_id=Os02g0614500;Note=Similar to integral membrane protein like.;Transcript_evidence=AK069766 (DDBJ%2C Best hit);ORF_evidence=NP_001149060.1 (RefSeq);NIAS_FLcDNA=J023026F21;Expression=AK069766;TENOR=Os02t0614500-02;KEGG=Os02t0614500-02
Chr02	irgsp1_rep	five_prime_UTR	24272854	24273511	.	-	.	Parent=Os02t0614500-02
Chr02	irgsp1_rep	CDS	24272557	24272853	.	-	0	Parent=Os02t0614500-02
Chr02	irgsp1_rep	three_prime_UTR	24270254	24272556	.	-	.	Parent=Os02t0614500-02
Chr02	irgsp1_rep	mRNA	24276488	24280992	.	+	.	ID=Os02t0614600-01;Name=Os02t0614600-01;Locus_id=Os02g0614600;Note=Protein of unknown function DUF869%2C plant family protein.;Transcript_evidence=AK099971 (DDBJ%2C Best hit);ORF_evidence=A2X771 (UniProt);InterPro=Protein of unknown function DUF869%2C plant (IPR008587);NIAS_FLcDNA=J013127M11;Expression=AK099971;TENOR=Os02t0614600-01;KEGG=Os02t0614600-01
Chr02	irgsp1_rep	five_prime_UTR	24276488	24276650	.	+	.	Parent=Os02t0614600-01
Chr02	irgsp1_rep	five_prime_UTR	24277900	24277998	.	+	.	Parent=Os02t0614600-01
Chr02	irgsp1_rep	CDS	24277999	24279848	.	+	0	Parent=Os02t0614600-01
Chr02	irgsp1_rep	CDS	24280031	24280091	.	+	1	Parent=Os02t0614600-01
Chr02	irgsp1_rep	CDS	24280233	24280694	.	+	0	Parent=Os02t0614600-01
Chr02	irgsp1_rep	three_prime_UTR	24280695	24280992	.	+	.	Parent=Os02t0614600-01
Chr02	irgsp1_rep	mRNA	24279191	24280992	.	+	.	ID=Os02t0614600-02;Name=Os02t0614600-02;Locus_id=Os02g0614600;Note=Hypothetical conserved gene.;Transcript_evidence=AK058581 (DDBJ%2C Best hit);ORF_evidence=B9F128 (UniProt);InterPro=Protein of unknown function DUF869%2C plant (IPR008587);NIAS_FLcDNA=001-017-F07;Expression=AK058581;TENOR=Os02t0614600-02;KEGG=Os02t0614600-02
Chr02	irgsp1_rep	five_prime_UTR	24279191	24279192	.	+	.	Parent=Os02t0614600-02
Chr02	irgsp1_rep	CDS	24279193	24279848	.	+	0	Parent=Os02t0614600-02
Chr02	irgsp1_rep	CDS	24280031	24280091	.	+	1	Parent=Os02t0614600-02
Chr02	irgsp1_rep	CDS	24280233	24280694	.	+	0	Parent=Os02t0614600-02
Chr02	irgsp1_rep	three_prime_UTR	24280695	24280992	.	+	.	Parent=Os02t0614600-02
Chr02	irgsp1_rep	mRNA	24277921	24280957	.	-	.	ID=Os02t0614666-00;Name=Os02t0614666-00;Locus_id=Os02g0614666;Note=Hypothetical protein.;Transcript_evidence=tplb0049o16 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0614666-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	24280799	24280957	.	-	.	Parent=Os02t0614666-00
Chr02	irgsp1_rep	five_prime_UTR	24280214	24280708	.	-	.	Parent=Os02t0614666-00
Chr02	irgsp1_rep	five_prime_UTR	24278670	24279833	.	-	.	Parent=Os02t0614666-00
Chr02	irgsp1_rep	CDS	24278609	24278669	.	-	0	Parent=Os02t0614666-00
Chr02	irgsp1_rep	CDS	24277921	24278555	.	-	2	Parent=Os02t0614666-00
Chr02	irgsp1_rep	mRNA	24283189	24283680	.	-	.	ID=Os02t0614700-00;Name=Os02t0614700-00;Locus_id=Os02g0614700;Note=B30.2/SPRY domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001047428.1 (RefSeq);InterPro=B30.2/SPRY domain (IPR001870);TENOR=Os02t0614700-00
Chr02	irgsp1_rep	CDS	24283189	24283680	.	-	0	Parent=Os02t0614700-00
Chr02	irgsp1_rep	mRNA	24283088	24285260	.	+	.	ID=Os02t0614732-01;Name=Os02t0614732-01;Locus_id=Os02g0614732;Note=Hypothetical gene.;Transcript_evidence=AK288973 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090085G23;TENOR=Os02t0614732-01;KEGG=Os02t0614732-01
Chr02	irgsp1_rep	five_prime_UTR	24283088	24283327	.	+	.	Parent=Os02t0614732-01
Chr02	irgsp1_rep	CDS	24283328	24283870	.	+	0	Parent=Os02t0614732-01
Chr02	irgsp1_rep	three_prime_UTR	24283871	24285260	.	+	.	Parent=Os02t0614732-01
Chr02	irgsp1_rep	mRNA	24284653	24288878	.	-	.	ID=Os02t0614800-01;Name=Os02t0614800-01;Locus_id=Os02g0614800;Note=Hypothetical protein.;Transcript_evidence=AK288240 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090013K21;TENOR=Os02t0614800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	24285179	24288878	.	-	.	Parent=Os02t0614800-01
Chr02	irgsp1_rep	CDS	24284849	24285178	.	-	0	Parent=Os02t0614800-01
Chr02	irgsp1_rep	three_prime_UTR	24284653	24284848	.	-	.	Parent=Os02t0614800-01
Chr02	irgsp1_rep	mRNA	24293057	24296448	.	+	.	ID=Os02t0614966-00;Name=Os02t0614966-00;Locus_id=Os02g0614966;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=AK356115 (DDBJ);ORF_evidence=B8ASJ8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);TENOR=Os02t0614966-00
Chr02	irgsp1_rep	CDS	24293057	24293959	.	+	0	Parent=Os02t0614966-00
Chr02	irgsp1_rep	three_prime_UTR	24293960	24294587	.	+	.	Parent=Os02t0614966-00
Chr02	irgsp1_rep	three_prime_UTR	24294644	24295187	.	+	.	Parent=Os02t0614966-00
Chr02	irgsp1_rep	three_prime_UTR	24296372	24296448	.	+	.	Parent=Os02t0614966-00
Chr02	irgsp1_rep	mRNA	24323918	24324493	.	+	.	ID=Os02t0615400-00;Name=Os02t0615400-00;Locus_id=Os02g0615400;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2X785 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);TENOR=Os02t0615400-00
Chr02	irgsp1_rep	CDS	24323918	24324493	.	+	0	Parent=Os02t0615400-00
Chr02	irgsp1_rep	mRNA	24327114	24331291	.	+	.	ID=Os02t0615500-01;Name=Os02t0615500-01;Locus_id=Os02g0615500;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK100073 (DDBJ%2C Best hit);ORF_evidence=B9F130 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013170D14;Expression=AK100073;TENOR=Os02t0615500-01;KEGG=Os02t0615500-01
Chr02	irgsp1_rep	five_prime_UTR	24327114	24327252	.	+	.	Parent=Os02t0615500-01
Chr02	irgsp1_rep	CDS	24327253	24327283	.	+	0	Parent=Os02t0615500-01
Chr02	irgsp1_rep	CDS	24327977	24330622	.	+	2	Parent=Os02t0615500-01
Chr02	irgsp1_rep	CDS	24330733	24331151	.	+	2	Parent=Os02t0615500-01
Chr02	irgsp1_rep	three_prime_UTR	24331152	24331291	.	+	.	Parent=Os02t0615500-01
Chr02	irgsp1_rep	mRNA	24327194	24330522	.	+	.	ID=Os02t0615500-02;Name=Os02t0615500-02;Locus_id=Os02g0615500;Note=Hypothetical conserved gene.;Transcript_evidence=AK068010 (DDBJ%2C Best hit);ORF_evidence=B9F130 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013129F19;Expression=AK068010;TENOR=Os02t0615500-02;KEGG=Os02t0615500-02
Chr02	irgsp1_rep	five_prime_UTR	24327194	24327283	.	+	.	Parent=Os02t0615500-02
Chr02	irgsp1_rep	five_prime_UTR	24327833	24327847	.	+	.	Parent=Os02t0615500-02
Chr02	irgsp1_rep	CDS	24327848	24327896	.	+	0	Parent=Os02t0615500-02
Chr02	irgsp1_rep	CDS	24327977	24330522	.	+	2	Parent=Os02t0615500-02
Chr02	irgsp1_rep	mRNA	24350730	24354469	.	+	.	ID=Os02t0615800-01;Name=Os02t0615800-01;Locus_id=Os02g0615800;Oryzabase Gene Symbol Synonym(s)=LP2%2C OsLP2;Oryzabase Gene Name Synonym(s)=Leaf Panicle 2;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK065018 (DDBJ%2C Best hit);ORF_evidence=D0VMS4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013001F17;Oryzabase=14747;Expression=AK065018;TENOR=Os02t0615800-01;KEGG=Os02t0615800-01
Chr02	irgsp1_rep	five_prime_UTR	24350730	24350872	.	+	.	Parent=Os02t0615800-01
Chr02	irgsp1_rep	five_prime_UTR	24351048	24351052	.	+	.	Parent=Os02t0615800-01
Chr02	irgsp1_rep	CDS	24351053	24353651	.	+	0	Parent=Os02t0615800-01
Chr02	irgsp1_rep	CDS	24353742	24354148	.	+	2	Parent=Os02t0615800-01
Chr02	irgsp1_rep	three_prime_UTR	24354149	24354469	.	+	.	Parent=Os02t0615800-01
Chr02	irgsp1_rep	mRNA	24352187	24354486	.	+	.	ID=Os02t0615800-02;Name=Os02t0615800-02;Locus_id=Os02g0615800;Oryzabase Gene Symbol Synonym(s)=LP2%2C OsLP2;Oryzabase Gene Name Synonym(s)=Leaf Panicle 2;Note=Hypothetical conserved gene.;Transcript_evidence=AK111664 (DDBJ%2C Best hit);ORF_evidence=XP_002452447.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013154A15;Oryzabase=14747;Expression=AK111664;TENOR=Os02t0615800-02;KEGG=Os02t0615800-02 (EC:2.7.11.1)
Chr02	irgsp1_rep	CDS	24352187	24353651	.	+	0	Parent=Os02t0615800-02
Chr02	irgsp1_rep	CDS	24353742	24354148	.	+	2	Parent=Os02t0615800-02
Chr02	irgsp1_rep	three_prime_UTR	24354149	24354486	.	+	.	Parent=Os02t0615800-02
Chr02	irgsp1_rep	mRNA	24372806	24374394	.	+	.	ID=Os02t0616100-01;Name=Os02t0616100-01;Locus_id=Os02g0616100;Note=Similar to protein binding protein.;Transcript_evidence=AK064829 (DDBJ%2C Best hit),AK103939 (DDBJ%2C Best hit),AK104284 (DDBJ%2C Best hit),AK104307 (DDBJ%2C Best hit),AK104310 (DDBJ%2C Best hit),AK104383 (DDBJ%2C Best hit),AK104455 (DDBJ%2C Best hit),AK104563 (DDBJ%2C Best hit),AK104569 (DDBJ%2C Best hit),AK104632 (DDBJ%2C Best hit),AK104662 (DDBJ%2C Best hit),AK106124 (DDBJ%2C Best hit),AK106204 (DDBJ%2C Best hit),AK109334 (DDBJ%2C Best hit),AK119668 (DDBJ%2C Best hit);ORF_evidence=B6T5E8 (UniProt);NIAS_FLcDNA=J013000F09,001-013-G07,001-007-A03,001-012-E07,001-013-H06,006-201-C11,006-301-A09,006-306-D08,006-306-G04,006-310-C05,006-311-E08,001-207-F02,001-208-F12,006-202-B09,002-149-H04;Expression=AK064829;TENOR=Os02t0616100-01;KEGG=Os02t0616100-01
Chr02	irgsp1_rep	five_prime_UTR	24372806	24372844	.	+	.	Parent=Os02t0616100-01
Chr02	irgsp1_rep	CDS	24372845	24374161	.	+	0	Parent=Os02t0616100-01
Chr02	irgsp1_rep	three_prime_UTR	24374162	24374394	.	+	.	Parent=Os02t0616100-01
Chr02	irgsp1_rep	mRNA	24372812	24374397	.	+	.	ID=Os02t0616100-04;Name=Os02t0616100-04;Locus_id=Os02g0616100;Note=Similar to protein binding protein.;Transcript_evidence=AK060972 (DDBJ%2C Best hit);ORF_evidence=NP_001150111.1 (RefSeq);NIAS_FLcDNA=006-202-D12;TENOR=Os02t0616100-04;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	24372812	24372844	.	+	.	Parent=Os02t0616100-04
Chr02	irgsp1_rep	CDS	24372845	24373830	.	+	0	Parent=Os02t0616100-04
Chr02	irgsp1_rep	CDS	24374046	24374283	.	+	1	Parent=Os02t0616100-04
Chr02	irgsp1_rep	three_prime_UTR	24374284	24374397	.	+	.	Parent=Os02t0616100-04
Chr02	irgsp1_rep	mRNA	24373069	24374397	.	+	.	ID=Os02t0616100-06;Name=Os02t0616100-06;Locus_id=Os02g0616100;Note=Similar to protein binding protein.;Transcript_evidence=AK105020 (DDBJ%2C Best hit),AK061687 (DDBJ%2C Best hit);ORF_evidence=NP_001150111.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=001-010-A05,001-037-B02;TENOR=Os02t0616100-06
Chr02	irgsp1_rep	five_prime_UTR	24373069	24373069	.	+	.	Parent=Os02t0616100-06
Chr02	irgsp1_rep	CDS	24373070	24374161	.	+	0	Parent=Os02t0616100-06
Chr02	irgsp1_rep	three_prime_UTR	24374162	24374397	.	+	.	Parent=Os02t0616100-06
Chr02	irgsp1_rep	mRNA	24373397	24374439	.	+	.	ID=Os02t0616100-07;Name=Os02t0616100-07;Locus_id=Os02g0616100;Note=Similar to protein binding protein.;Transcript_evidence=AK059998 (DDBJ%2C Best hit),AK104607 (DDBJ%2C Best hit),AK104643 (DDBJ%2C Best hit);ORF_evidence=B6T5E8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=006-301-G05,006-309-B08,006-310-G04;Expression=AK059998;TENOR=Os02t0616100-07;KEGG=Os02t0616100-07
Chr02	irgsp1_rep	CDS	24373397	24374161	.	+	0	Parent=Os02t0616100-07
Chr02	irgsp1_rep	three_prime_UTR	24374162	24374439	.	+	.	Parent=Os02t0616100-07
Chr02	irgsp1_rep	mRNA	24380848	24382673	.	-	.	ID=Os02t0616199-00;Name=Os02t0616199-00;Locus_id=Os02g0616199;Note=Conserved hypothetical protein.;Transcript_evidence=AK361186 (DDBJ);ORF_evidence=A2X777 (UniProt);TENOR=Os02t0616199-00
Chr02	irgsp1_rep	CDS	24382495	24382673	.	-	0	Parent=Os02t0616199-00
Chr02	irgsp1_rep	CDS	24382151	24382365	.	-	1	Parent=Os02t0616199-00
Chr02	irgsp1_rep	CDS	24381647	24381860	.	-	2	Parent=Os02t0616199-00
Chr02	irgsp1_rep	CDS	24381515	24381539	.	-	1	Parent=Os02t0616199-00
Chr02	irgsp1_rep	three_prime_UTR	24380848	24381514	.	-	.	Parent=Os02t0616199-00
Chr02	irgsp1_rep	mRNA	24391316	24406611	.	-	.	ID=Os02t0616300-00;Name=Os02t0616300-00;Locus_id=Os02g0616300;Note=Similar to Protein argonaute MEL1.;Transcript_evidence=AK374742 (DDBJ);ORF_evidence=Q851R2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Argonaute/Dicer protein%2C PAZ (IPR003100),Domain of unknown function DUF1785 (IPR014811);TENOR=Os02t0616300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	24406356	24406611	.	-	0	Parent=Os02t0616300-00
Chr02	irgsp1_rep	CDS	24404659	24404768	.	-	2	Parent=Os02t0616300-00
Chr02	irgsp1_rep	CDS	24404464	24404570	.	-	0	Parent=Os02t0616300-00
Chr02	irgsp1_rep	CDS	24404233	24404371	.	-	1	Parent=Os02t0616300-00
Chr02	irgsp1_rep	CDS	24404050	24404166	.	-	0	Parent=Os02t0616300-00
Chr02	irgsp1_rep	CDS	24403830	24403931	.	-	0	Parent=Os02t0616300-00
Chr02	irgsp1_rep	CDS	24403670	24403741	.	-	0	Parent=Os02t0616300-00
Chr02	irgsp1_rep	CDS	24396408	24396500	.	-	0	Parent=Os02t0616300-00
Chr02	irgsp1_rep	three_prime_UTR	24396349	24396407	.	-	.	Parent=Os02t0616300-00
Chr02	irgsp1_rep	three_prime_UTR	24395953	24396202	.	-	.	Parent=Os02t0616300-00
Chr02	irgsp1_rep	three_prime_UTR	24395737	24395874	.	-	.	Parent=Os02t0616300-00
Chr02	irgsp1_rep	three_prime_UTR	24395391	24395531	.	-	.	Parent=Os02t0616300-00
Chr02	irgsp1_rep	three_prime_UTR	24395233	24395297	.	-	.	Parent=Os02t0616300-00
Chr02	irgsp1_rep	three_prime_UTR	24395095	24395156	.	-	.	Parent=Os02t0616300-00
Chr02	irgsp1_rep	three_prime_UTR	24394885	24395017	.	-	.	Parent=Os02t0616300-00
Chr02	irgsp1_rep	three_prime_UTR	24394243	24394313	.	-	.	Parent=Os02t0616300-00
Chr02	irgsp1_rep	three_prime_UTR	24391316	24391418	.	-	.	Parent=Os02t0616300-00
Chr02	irgsp1_rep	mRNA	24391737	24395742	.	+	.	ID=Os02t0616450-01;Name=Os02t0616450-01;Locus_id=Os02g0616450;Note=Hypothetical gene.;Transcript_evidence=AK288912 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090081G20;TENOR=Os02t0616450-01;KEGG=Os02t0616450-01
Chr02	irgsp1_rep	five_prime_UTR	24391737	24391939	.	+	.	Parent=Os02t0616450-01
Chr02	irgsp1_rep	CDS	24391940	24392251	.	+	0	Parent=Os02t0616450-01
Chr02	irgsp1_rep	three_prime_UTR	24392252	24395742	.	+	.	Parent=Os02t0616450-01
Chr02	irgsp1_rep	mRNA	24410357	24414084	.	-	.	ID=Os02t0616600-01;Name=Os02t0616600-01;Locus_id=Os02g0616600;Note=Hypothetical protein.;Transcript_evidence=AK106681 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-114-B06;TENOR=Os02t0616600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	24414052	24414084	.	-	.	Parent=Os02t0616600-01
Chr02	irgsp1_rep	CDS	24413728	24414051	.	-	0	Parent=Os02t0616600-01
Chr02	irgsp1_rep	three_prime_UTR	24413647	24413727	.	-	.	Parent=Os02t0616600-01
Chr02	irgsp1_rep	three_prime_UTR	24412471	24412562	.	-	.	Parent=Os02t0616600-01
Chr02	irgsp1_rep	three_prime_UTR	24410357	24411523	.	-	.	Parent=Os02t0616600-01
Chr02	irgsp1_rep	mRNA	24409317	24413525	.	-	.	ID=Os02t0616600-02;Name=Os02t0616600-02;Locus_id=Os02g0616600;Note=Conserved hypothetical protein.;Transcript_evidence=AK105414 (DDBJ%2C Best hit);ORF_evidence=Q7F805 (UniProt);NIAS_FLcDNA=001-123-H09;TENOR=Os02t0616600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	24410000	24413525	.	-	.	Parent=Os02t0616600-02
Chr02	irgsp1_rep	CDS	24409679	24409999	.	-	0	Parent=Os02t0616600-02
Chr02	irgsp1_rep	three_prime_UTR	24409317	24409678	.	-	.	Parent=Os02t0616600-02
Chr02	irgsp1_rep	mRNA	24432055	24435197	.	-	.	ID=Os02t0616800-01;Name=Os02t0616800-01;Locus_id=Os02g0616800;Note=Ribosome-inactivating protein domain containing protein.;Transcript_evidence=AK070878 (DDBJ%2C Best hit);ORF_evidence=A2X779 (UniProt);GO=Biological Process: negative regulation of translation (GO:0017148),Molecular Function: rRNA N-glycosylase activity (GO:0030598);InterPro=Ribosome-inactivating protein (IPR001574);NIAS_FLcDNA=J023065I08;Expression=AK070878;TENOR=Os02t0616800-01;KEGG=Os02t0616800-01
Chr02	irgsp1_rep	five_prime_UTR	24434839	24435197	.	-	.	Parent=Os02t0616800-01
Chr02	irgsp1_rep	five_prime_UTR	24434217	24434287	.	-	.	Parent=Os02t0616800-01
Chr02	irgsp1_rep	five_prime_UTR	24433331	24433360	.	-	.	Parent=Os02t0616800-01
Chr02	irgsp1_rep	CDS	24432179	24433330	.	-	0	Parent=Os02t0616800-01
Chr02	irgsp1_rep	three_prime_UTR	24432055	24432178	.	-	.	Parent=Os02t0616800-01
Chr02	irgsp1_rep	mRNA	24462245	24463854	.	-	.	ID=Os02t0617000-00;Name=Os02t0617000-00;Locus_id=Os02g0617000;Note=Conserved hypothetical protein.;Transcript_evidence=AK361186 (DDBJ);ORF_evidence=B8AFG0 (UniProt);TENOR=Os02t0617000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	24463762	24463854	.	-	.	Parent=Os02t0617000-00
Chr02	irgsp1_rep	CDS	24463377	24463761	.	-	0	Parent=Os02t0617000-00
Chr02	irgsp1_rep	CDS	24463033	24463247	.	-	2	Parent=Os02t0617000-00
Chr02	irgsp1_rep	CDS	24462248	24462898	.	-	0	Parent=Os02t0617000-00
Chr02	irgsp1_rep	three_prime_UTR	24462245	24462247	.	-	.	Parent=Os02t0617000-00
Chr02	irgsp1_rep	mRNA	24466435	24467715	.	-	.	ID=Os02t0617075-00;Name=Os02t0617075-00;Locus_id=Os02g0617075;Note=Ribosome-inactivating protein domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6K8T4 (UniProt);GO=Biological Process: negative regulation of translation (GO:0017148),Molecular Function: rRNA N-glycosylase activity (GO:0030598);InterPro=Ribosome-inactivating protein (IPR001574);TENOR=Os02t0617075-00
Chr02	irgsp1_rep	CDS	24466435	24467715	.	-	0	Parent=Os02t0617075-00
Chr02	irgsp1_rep	mRNA	24471545	24472870	.	-	.	ID=Os02t0617100-01;Name=Os02t0617100-01;Locus_id=Os02g0617100;Note=Conserved hypothetical protein.;Transcript_evidence=AK062664 (DDBJ%2C Best hit);ORF_evidence=A3A933 (UniProt);NIAS_FLcDNA=001-105-F08;TENOR=Os02t0617100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	24472772	24472870	.	-	0	Parent=Os02t0617100-01
Chr02	irgsp1_rep	CDS	24472401	24472593	.	-	0	Parent=Os02t0617100-01
Chr02	irgsp1_rep	CDS	24471662	24472317	.	-	2	Parent=Os02t0617100-01
Chr02	irgsp1_rep	three_prime_UTR	24471545	24471661	.	-	.	Parent=Os02t0617100-01
Chr02	irgsp1_rep	mRNA	24482920	24487358	.	-	.	ID=Os02t0617200-01;Name=Os02t0617200-01;Locus_id=Os02g0617200;Note=Conserved hypothetical protein.;Transcript_evidence=AK241868 (DDBJ%2C Best hit);ORF_evidence=Q6K8S9 (UniProt);NIAS_FLcDNA=J065217L12;TENOR=Os02t0617200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	24487357	24487358	.	-	.	Parent=Os02t0617200-01
Chr02	irgsp1_rep	CDS	24487299	24487356	.	-	0	Parent=Os02t0617200-01
Chr02	irgsp1_rep	CDS	24486567	24486662	.	-	2	Parent=Os02t0617200-01
Chr02	irgsp1_rep	CDS	24485933	24486037	.	-	2	Parent=Os02t0617200-01
Chr02	irgsp1_rep	CDS	24485670	24485809	.	-	2	Parent=Os02t0617200-01
Chr02	irgsp1_rep	three_prime_UTR	24485478	24485669	.	-	.	Parent=Os02t0617200-01
Chr02	irgsp1_rep	three_prime_UTR	24484732	24484980	.	-	.	Parent=Os02t0617200-01
Chr02	irgsp1_rep	three_prime_UTR	24482920	24484622	.	-	.	Parent=Os02t0617200-01
Chr02	irgsp1_rep	mRNA	24488770	24501970	.	-	.	ID=Os02t0617300-01;Name=Os02t0617300-01;Locus_id=Os02g0617300;Note=Similar to OSIGBa0157A06.7 protein.;Transcript_evidence=AK120120 (DDBJ%2C Best hit);ORF_evidence=Q01IV2 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),HEAT%2C type 2 (IPR021133),CLASP N-terminal domain (IPR024395);NIAS_FLcDNA=J013025O20;Expression=AK120120;TENOR=Os02t0617300-01;KEGG=Os02t0617300-01
Chr02	irgsp1_rep	five_prime_UTR	24501838	24501970	.	-	.	Parent=Os02t0617300-01
Chr02	irgsp1_rep	CDS	24501502	24501837	.	-	0	Parent=Os02t0617300-01
Chr02	irgsp1_rep	CDS	24499489	24499644	.	-	0	Parent=Os02t0617300-01
Chr02	irgsp1_rep	CDS	24499327	24499389	.	-	0	Parent=Os02t0617300-01
Chr02	irgsp1_rep	CDS	24498479	24498547	.	-	0	Parent=Os02t0617300-01
Chr02	irgsp1_rep	CDS	24498156	24498319	.	-	0	Parent=Os02t0617300-01
Chr02	irgsp1_rep	CDS	24496980	24497140	.	-	1	Parent=Os02t0617300-01
Chr02	irgsp1_rep	CDS	24496353	24496450	.	-	2	Parent=Os02t0617300-01
Chr02	irgsp1_rep	CDS	24496101	24496175	.	-	0	Parent=Os02t0617300-01
Chr02	irgsp1_rep	CDS	24495941	24496009	.	-	0	Parent=Os02t0617300-01
Chr02	irgsp1_rep	CDS	24495773	24495858	.	-	0	Parent=Os02t0617300-01
Chr02	irgsp1_rep	CDS	24495569	24495686	.	-	1	Parent=Os02t0617300-01
Chr02	irgsp1_rep	CDS	24495355	24495453	.	-	0	Parent=Os02t0617300-01
Chr02	irgsp1_rep	CDS	24494044	24494395	.	-	0	Parent=Os02t0617300-01
Chr02	irgsp1_rep	CDS	24493768	24493916	.	-	2	Parent=Os02t0617300-01
Chr02	irgsp1_rep	three_prime_UTR	24492128	24493767	.	-	.	Parent=Os02t0617300-01
Chr02	irgsp1_rep	three_prime_UTR	24491916	24492014	.	-	.	Parent=Os02t0617300-01
Chr02	irgsp1_rep	three_prime_UTR	24491191	24491295	.	-	.	Parent=Os02t0617300-01
Chr02	irgsp1_rep	three_prime_UTR	24491035	24491109	.	-	.	Parent=Os02t0617300-01
Chr02	irgsp1_rep	three_prime_UTR	24490901	24490969	.	-	.	Parent=Os02t0617300-01
Chr02	irgsp1_rep	three_prime_UTR	24490715	24490783	.	-	.	Parent=Os02t0617300-01
Chr02	irgsp1_rep	three_prime_UTR	24490140	24490241	.	-	.	Parent=Os02t0617300-01
Chr02	irgsp1_rep	three_prime_UTR	24488770	24489273	.	-	.	Parent=Os02t0617300-01
Chr02	irgsp1_rep	mRNA	24488773	24501969	.	-	.	ID=Os02t0617300-02;Name=Os02t0617300-02;Locus_id=Os02g0617300;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK067382 (DDBJ%2C Best hit);ORF_evidence=Q01IV2 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),HEAT%2C type 2 (IPR021133),CLASP N-terminal domain (IPR024395);NIAS_FLcDNA=J013102B13;Expression=AK067382;TENOR=Os02t0617300-02;KEGG=Os02t0617300-02
Chr02	irgsp1_rep	five_prime_UTR	24501838	24501969	.	-	.	Parent=Os02t0617300-02
Chr02	irgsp1_rep	CDS	24501502	24501837	.	-	0	Parent=Os02t0617300-02
Chr02	irgsp1_rep	CDS	24499489	24499644	.	-	0	Parent=Os02t0617300-02
Chr02	irgsp1_rep	CDS	24499327	24499389	.	-	0	Parent=Os02t0617300-02
Chr02	irgsp1_rep	CDS	24498479	24498547	.	-	0	Parent=Os02t0617300-02
Chr02	irgsp1_rep	CDS	24498156	24498319	.	-	0	Parent=Os02t0617300-02
Chr02	irgsp1_rep	CDS	24496980	24497140	.	-	1	Parent=Os02t0617300-02
Chr02	irgsp1_rep	CDS	24496353	24496450	.	-	2	Parent=Os02t0617300-02
Chr02	irgsp1_rep	CDS	24496101	24496175	.	-	0	Parent=Os02t0617300-02
Chr02	irgsp1_rep	CDS	24495941	24496009	.	-	0	Parent=Os02t0617300-02
Chr02	irgsp1_rep	CDS	24495773	24495858	.	-	0	Parent=Os02t0617300-02
Chr02	irgsp1_rep	CDS	24495569	24495686	.	-	1	Parent=Os02t0617300-02
Chr02	irgsp1_rep	CDS	24495355	24495453	.	-	0	Parent=Os02t0617300-02
Chr02	irgsp1_rep	CDS	24494044	24494395	.	-	0	Parent=Os02t0617300-02
Chr02	irgsp1_rep	CDS	24493530	24493911	.	-	2	Parent=Os02t0617300-02
Chr02	irgsp1_rep	CDS	24493243	24493282	.	-	1	Parent=Os02t0617300-02
Chr02	irgsp1_rep	three_prime_UTR	24492128	24493242	.	-	.	Parent=Os02t0617300-02
Chr02	irgsp1_rep	three_prime_UTR	24491916	24492014	.	-	.	Parent=Os02t0617300-02
Chr02	irgsp1_rep	three_prime_UTR	24491191	24491295	.	-	.	Parent=Os02t0617300-02
Chr02	irgsp1_rep	three_prime_UTR	24491035	24491109	.	-	.	Parent=Os02t0617300-02
Chr02	irgsp1_rep	three_prime_UTR	24490901	24490969	.	-	.	Parent=Os02t0617300-02
Chr02	irgsp1_rep	three_prime_UTR	24490715	24490783	.	-	.	Parent=Os02t0617300-02
Chr02	irgsp1_rep	three_prime_UTR	24490140	24490241	.	-	.	Parent=Os02t0617300-02
Chr02	irgsp1_rep	three_prime_UTR	24488773	24489273	.	-	.	Parent=Os02t0617300-02
Chr02	irgsp1_rep	mRNA	24516374	24518168	.	+	.	ID=Os02t0617400-01;Name=Os02t0617400-01;Locus_id=Os02g0617400;CGSNL Gene Symbol=GELP40;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 40;Oryzabase Gene Symbol Synonym(s)=OsGELP40;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 40;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK108108 (DDBJ%2C Best hit);ORF_evidence=B6T435 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=002-139-B09;Oryzabase=10990;Expression=AK108108;TENOR=Os02t0617400-01;KEGG=Os02t0617400-01
Chr02	irgsp1_rep	five_prime_UTR	24516374	24516475	.	+	.	Parent=Os02t0617400-01
Chr02	irgsp1_rep	CDS	24516476	24516713	.	+	0	Parent=Os02t0617400-01
Chr02	irgsp1_rep	CDS	24516803	24516930	.	+	2	Parent=Os02t0617400-01
Chr02	irgsp1_rep	CDS	24517046	24517288	.	+	0	Parent=Os02t0617400-01
Chr02	irgsp1_rep	CDS	24517442	24517694	.	+	0	Parent=Os02t0617400-01
Chr02	irgsp1_rep	CDS	24517789	24518030	.	+	2	Parent=Os02t0617400-01
Chr02	irgsp1_rep	three_prime_UTR	24518031	24518168	.	+	.	Parent=Os02t0617400-01
Chr02	irgsp1_rep	mRNA	24518341	24524346	.	+	.	ID=Os02t0617500-01;Name=Os02t0617500-01;Locus_id=Os02g0617500;CGSNL Gene Symbol=RMC1;CGSNL Gene Name=RICE MEIOTIC CROSSOVER 1;Oryzabase Gene Symbol Synonym(s)=MER3%2C mer3%2C OsMER3%2C RCK%2C OsRCK%2C Os-MER3;Oryzabase Gene Name Synonym(s)=ZMM protein%2C ROCK-N-ROLLERS;Note=DEAD-like helicase%2C N-terminal domain containing protein.;Transcript_evidence=AK106578 (DDBJ%2C Best hit);ORF_evidence=B6DMK2 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=Helicase%2C C-terminal (IPR001650),Sec63 domain (IPR004179),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001);NIAS_FLcDNA=002-111-C08;Oryzabase=9116;TENOR=Os02t0617500-01
Chr02	irgsp1_rep	five_prime_UTR	24518341	24518499	.	+	.	Parent=Os02t0617500-01
Chr02	irgsp1_rep	five_prime_UTR	24518690	24518701	.	+	.	Parent=Os02t0617500-01
Chr02	irgsp1_rep	CDS	24518702	24518790	.	+	0	Parent=Os02t0617500-01
Chr02	irgsp1_rep	CDS	24519036	24519219	.	+	1	Parent=Os02t0617500-01
Chr02	irgsp1_rep	CDS	24519332	24519493	.	+	0	Parent=Os02t0617500-01
Chr02	irgsp1_rep	CDS	24519595	24519832	.	+	0	Parent=Os02t0617500-01
Chr02	irgsp1_rep	CDS	24519941	24519977	.	+	2	Parent=Os02t0617500-01
Chr02	irgsp1_rep	CDS	24520046	24520092	.	+	1	Parent=Os02t0617500-01
Chr02	irgsp1_rep	CDS	24520406	24520443	.	+	2	Parent=Os02t0617500-01
Chr02	irgsp1_rep	CDS	24520625	24520646	.	+	0	Parent=Os02t0617500-01
Chr02	irgsp1_rep	CDS	24520735	24520947	.	+	2	Parent=Os02t0617500-01
Chr02	irgsp1_rep	CDS	24521069	24521225	.	+	2	Parent=Os02t0617500-01
Chr02	irgsp1_rep	CDS	24521309	24521360	.	+	1	Parent=Os02t0617500-01
Chr02	irgsp1_rep	CDS	24522215	24522286	.	+	0	Parent=Os02t0617500-01
Chr02	irgsp1_rep	CDS	24522395	24522444	.	+	0	Parent=Os02t0617500-01
Chr02	irgsp1_rep	CDS	24522551	24522666	.	+	1	Parent=Os02t0617500-01
Chr02	irgsp1_rep	CDS	24522749	24522814	.	+	2	Parent=Os02t0617500-01
Chr02	irgsp1_rep	CDS	24522886	24522969	.	+	2	Parent=Os02t0617500-01
Chr02	irgsp1_rep	CDS	24524025	24524150	.	+	2	Parent=Os02t0617500-01
Chr02	irgsp1_rep	CDS	24524229	24524346	.	+	2	Parent=Os02t0617500-01
Chr02	irgsp1_rep	mRNA	24522998	24523094	.	-	.	ID=Os02t0617550-00;Name=Os02t0617550-00;Locus_id=Os02g0617550;Note=Non-protein coding transcript.;Transcript_evidence=EU941683 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0617550-00
Chr02	irgsp1_rep	exon	24522998	24523094	.	-	.	Parent=Os02t0617550-00
Chr02	irgsp1_rep	mRNA	24527410	24530961	.	-	.	ID=Os02t0617600-01;Name=Os02t0617600-01;Locus_id=Os02g0617600;Note=Protein phosphatase 2A%2C regulatory subunit PR55 domain containing protein.;Transcript_evidence=AK111600 (DDBJ%2C Best hit);ORF_evidence=B8AFG7 (UniProt);GO=Biological Process: signal transduction (GO:0007165),Cellular Component: protein phosphatase type 2A complex (GO:0000159),Molecular Function: protein binding (GO:0005515),Molecular Function: protein phosphatase type 2A regulator activity (GO:0008601);InterPro=Protein phosphatase 2A%2C regulatory subunit PR55 (IPR000009),WD40/YVTN repeat-like-containing domain (IPR015943);NIAS_FLcDNA=J013094K16;TENOR=Os02t0617600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	24530839	24530961	.	-	.	Parent=Os02t0617600-01
Chr02	irgsp1_rep	CDS	24530637	24530838	.	-	0	Parent=Os02t0617600-01
Chr02	irgsp1_rep	CDS	24530443	24530549	.	-	2	Parent=Os02t0617600-01
Chr02	irgsp1_rep	CDS	24530243	24530347	.	-	0	Parent=Os02t0617600-01
Chr02	irgsp1_rep	CDS	24530036	24530158	.	-	0	Parent=Os02t0617600-01
Chr02	irgsp1_rep	CDS	24529811	24529936	.	-	0	Parent=Os02t0617600-01
Chr02	irgsp1_rep	three_prime_UTR	24529731	24529810	.	-	.	Parent=Os02t0617600-01
Chr02	irgsp1_rep	three_prime_UTR	24529560	24529651	.	-	.	Parent=Os02t0617600-01
Chr02	irgsp1_rep	three_prime_UTR	24529325	24529439	.	-	.	Parent=Os02t0617600-01
Chr02	irgsp1_rep	three_prime_UTR	24528693	24528816	.	-	.	Parent=Os02t0617600-01
Chr02	irgsp1_rep	three_prime_UTR	24528478	24528604	.	-	.	Parent=Os02t0617600-01
Chr02	irgsp1_rep	three_prime_UTR	24528281	24528349	.	-	.	Parent=Os02t0617600-01
Chr02	irgsp1_rep	three_prime_UTR	24528085	24528176	.	-	.	Parent=Os02t0617600-01
Chr02	irgsp1_rep	three_prime_UTR	24527912	24527989	.	-	.	Parent=Os02t0617600-01
Chr02	irgsp1_rep	three_prime_UTR	24527753	24527823	.	-	.	Parent=Os02t0617600-01
Chr02	irgsp1_rep	three_prime_UTR	24527410	24527635	.	-	.	Parent=Os02t0617600-01
Chr02	irgsp1_rep	mRNA	24527339	24530935	.	-	.	ID=Os02t0617600-02;Name=Os02t0617600-02;Locus_id=Os02g0617600;Note=Protein phosphatase 2A%2C regulatory subunit PR55 domain containing protein.;Transcript_evidence=AK111533 (DDBJ%2C Best hit);ORF_evidence=B8AFG7 (UniProt);GO=Biological Process: signal transduction (GO:0007165),Cellular Component: protein phosphatase type 2A complex (GO:0000159),Molecular Function: protein binding (GO:0005515),Molecular Function: protein phosphatase type 2A regulator activity (GO:0008601);InterPro=Protein phosphatase 2A%2C regulatory subunit PR55 (IPR000009),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943);NIAS_FLcDNA=J013030C15;TENOR=Os02t0617600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	24530839	24530935	.	-	.	Parent=Os02t0617600-02
Chr02	irgsp1_rep	CDS	24530637	24530838	.	-	0	Parent=Os02t0617600-02
Chr02	irgsp1_rep	CDS	24530442	24530549	.	-	2	Parent=Os02t0617600-02
Chr02	irgsp1_rep	CDS	24530243	24530250	.	-	2	Parent=Os02t0617600-02
Chr02	irgsp1_rep	CDS	24530036	24530158	.	-	0	Parent=Os02t0617600-02
Chr02	irgsp1_rep	CDS	24529811	24529936	.	-	0	Parent=Os02t0617600-02
Chr02	irgsp1_rep	three_prime_UTR	24529731	24529810	.	-	.	Parent=Os02t0617600-02
Chr02	irgsp1_rep	three_prime_UTR	24529560	24529651	.	-	.	Parent=Os02t0617600-02
Chr02	irgsp1_rep	three_prime_UTR	24529325	24529465	.	-	.	Parent=Os02t0617600-02
Chr02	irgsp1_rep	three_prime_UTR	24528693	24528816	.	-	.	Parent=Os02t0617600-02
Chr02	irgsp1_rep	three_prime_UTR	24528478	24528604	.	-	.	Parent=Os02t0617600-02
Chr02	irgsp1_rep	three_prime_UTR	24528281	24528349	.	-	.	Parent=Os02t0617600-02
Chr02	irgsp1_rep	three_prime_UTR	24528085	24528176	.	-	.	Parent=Os02t0617600-02
Chr02	irgsp1_rep	three_prime_UTR	24527912	24527989	.	-	.	Parent=Os02t0617600-02
Chr02	irgsp1_rep	three_prime_UTR	24527753	24527823	.	-	.	Parent=Os02t0617600-02
Chr02	irgsp1_rep	three_prime_UTR	24527339	24527635	.	-	.	Parent=Os02t0617600-02
Chr02	irgsp1_rep	mRNA	24526907	24530876	.	-	.	ID=Os02t0617600-03;Name=Os02t0617600-03;Locus_id=Os02g0617600;Note=Protein phosphatase 2A%2C regulatory subunit PR55 domain containing protein.;Transcript_evidence=AK107050 (DDBJ%2C Best hit);ORF_evidence=B9F139 (UniProt);GO=Biological Process: signal transduction (GO:0007165),Cellular Component: protein phosphatase type 2A complex (GO:0000159),Molecular Function: protein binding (GO:0005515),Molecular Function: protein phosphatase type 2A regulator activity (GO:0008601);InterPro=Protein phosphatase 2A%2C regulatory subunit PR55 (IPR000009),WD40/YVTN repeat-like-containing domain (IPR015943);NIAS_FLcDNA=002-121-D01;TENOR=Os02t0617600-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	24530839	24530876	.	-	.	Parent=Os02t0617600-03
Chr02	irgsp1_rep	CDS	24530637	24530838	.	-	0	Parent=Os02t0617600-03
Chr02	irgsp1_rep	CDS	24530443	24530549	.	-	2	Parent=Os02t0617600-03
Chr02	irgsp1_rep	CDS	24530243	24530347	.	-	0	Parent=Os02t0617600-03
Chr02	irgsp1_rep	CDS	24530036	24530158	.	-	0	Parent=Os02t0617600-03
Chr02	irgsp1_rep	CDS	24529731	24529925	.	-	0	Parent=Os02t0617600-03
Chr02	irgsp1_rep	CDS	24529437	24529439	.	-	0	Parent=Os02t0617600-03
Chr02	irgsp1_rep	three_prime_UTR	24529325	24529436	.	-	.	Parent=Os02t0617600-03
Chr02	irgsp1_rep	three_prime_UTR	24528693	24528816	.	-	.	Parent=Os02t0617600-03
Chr02	irgsp1_rep	three_prime_UTR	24528478	24528604	.	-	.	Parent=Os02t0617600-03
Chr02	irgsp1_rep	three_prime_UTR	24528281	24528349	.	-	.	Parent=Os02t0617600-03
Chr02	irgsp1_rep	three_prime_UTR	24528085	24528176	.	-	.	Parent=Os02t0617600-03
Chr02	irgsp1_rep	three_prime_UTR	24527912	24527989	.	-	.	Parent=Os02t0617600-03
Chr02	irgsp1_rep	three_prime_UTR	24527753	24527823	.	-	.	Parent=Os02t0617600-03
Chr02	irgsp1_rep	three_prime_UTR	24526907	24527635	.	-	.	Parent=Os02t0617600-03
Chr02	irgsp1_rep	mRNA	24531302	24533644	.	-	.	ID=Os02t0617700-01;Name=Os02t0617700-01;Locus_id=Os02g0617700;Note=Nucleic acid-binding%2C OB-fold domain containing protein.;Transcript_evidence=AK058997 (DDBJ%2C Best hit);ORF_evidence=Q6KAI0 (UniProt);GO=Biological Process: mRNA catabolic process (GO:0006402),Molecular Function: RNA binding (GO:0003723),Molecular Function: polyribonucleotide nucleotidyltransferase activity (GO:0004654);InterPro=Ribosomal protein S1%2C RNA-binding domain (IPR003029),Polyribonucleotide nucleotidyltransferase (IPR012162),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),RNA-binding domain%2C S1 (IPR022967);NIAS_FLcDNA=001-020-G05;Expression=AK058997;TENOR=Os02t0617700-01;KEGG=Os02t0617700-01
Chr02	irgsp1_rep	five_prime_UTR	24533643	24533644	.	-	.	Parent=Os02t0617700-01
Chr02	irgsp1_rep	CDS	24533592	24533642	.	-	0	Parent=Os02t0617700-01
Chr02	irgsp1_rep	CDS	24533262	24533405	.	-	0	Parent=Os02t0617700-01
Chr02	irgsp1_rep	CDS	24531945	24532619	.	-	0	Parent=Os02t0617700-01
Chr02	irgsp1_rep	CDS	24531531	24531629	.	-	0	Parent=Os02t0617700-01
Chr02	irgsp1_rep	three_prime_UTR	24531302	24531530	.	-	.	Parent=Os02t0617700-01
Chr02	irgsp1_rep	mRNA	24554106	24554693	.	+	.	ID=Os02t0617800-01;Name=Os02t0617800-01;Locus_id=Os02g0617800;Note=Hypothetical gene.;Transcript_evidence=AK059678 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-031-H02;Expression=AK059678;TENOR=Os02t0617800-01;KEGG=Os02t0617800-01
Chr02	irgsp1_rep	five_prime_UTR	24554106	24554160	.	+	.	Parent=Os02t0617800-01
Chr02	irgsp1_rep	five_prime_UTR	24554240	24554429	.	+	.	Parent=Os02t0617800-01
Chr02	irgsp1_rep	CDS	24554430	24554693	.	+	0	Parent=Os02t0617800-01
Chr02	irgsp1_rep	mRNA	24563189	24563451	.	+	.	ID=Os02t0617900-01;Name=Os02t0617900-01;Locus_id=Os02g0617900;Note=Non-protein coding transcript.;Transcript_evidence=AK242424 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080086C23;TENOR=Os02t0617900-01
Chr02	irgsp1_rep	exon	24563189	24563451	.	+	.	Parent=Os02t0617900-01
Chr02	irgsp1_rep	mRNA	24564049	24564603	.	+	.	ID=Os02t0618000-01;Name=Os02t0618000-01;Locus_id=Os02g0618000;Note=Non-protein coding transcript.;Transcript_evidence=AK111938 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-009-A04;TENOR=Os02t0618000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	exon	24564049	24564603	.	+	.	Parent=Os02t0618000-01
Chr02	irgsp1_rep	mRNA	24566319	24568207	.	+	.	ID=Os02t0618100-01;Name=Os02t0618100-01;Locus_id=Os02g0618100;RAP-DB Gene Symbol Synonym(s)=OsGrx_C2.1;CGSNL Gene Symbol=GRX9;CGSNL Gene Name=GLUTAREDOXIN 9;Oryzabase Gene Symbol Synonym(s)=OsGRX9%2C OsGrx_C2.1%2C Grx_C2.1;Oryzabase Gene Name Synonym(s)=glutaredoxin 9;Note=Glutaredoxin (Grx) family protein%2C Arsenic (As) stress response%2C Drought tolerance;Transcript_evidence=AK240703 (truncated),Inferred from literature;ORF_evidence=Q6K953;GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron transfer activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Thioredoxin-like superfamily (IPR036249),Glutaredoxin (IPR002109),Glutaredoxin subgroup (IPR014025),Glutaredoxin%2C eukaryotic/virial (IPR011899),Glutaredoxin active site (IPR011767);NIAS_FLcDNA=J043016G05 (truncated);Manual Curation=June 1%2C 2020;Literature_PMID=32464438,27462345,27313586;Oryzabase=13585;TENOR=Os02t0618100-01;KEGG=Os02t0618100-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	24566319	24566452	.	+	0	Parent=Os02t0618100-01
Chr02	irgsp1_rep	CDS	24567022	24567110	.	+	1	Parent=Os02t0618100-01
Chr02	irgsp1_rep	CDS	24567646	24567744	.	+	2	Parent=Os02t0618100-01
Chr02	irgsp1_rep	CDS	24567933	24568012	.	+	2	Parent=Os02t0618100-01
Chr02	irgsp1_rep	three_prime_UTR	24568013	24568207	.	+	.	Parent=Os02t0618100-01
Chr02	irgsp1_rep	mRNA	24569489	24572391	.	+	.	ID=Os02t0618200-01;Name=Os02t0618200-01;Locus_id=Os02g0618200;RAP-DB Gene Symbol Synonym(s)=OsPRR1%2C OsTOC1%2C OsPRR1/OsTOC1;RAP-DB Gene Name Synonym(s)=Pseudo-Response Regulator 1%2C TIMING OF CAB EXPRESSION 1;CGSNL Gene Symbol=TOC1;CGSNL Gene Name=TIMING OF CAB EXPRESSION 1;Oryzabase Gene Symbol Synonym(s)=OsTOC1%2C OsPRR1%2C Os-PRR1%2C PRR1%2C OsRRA21%2C OsCCT07;Oryzabase Gene Name Synonym(s)=Two-component response regulator-like PRR1%2C Pseudo-response regulator 1%2C A-type RR 21%2C CCT domain-containing gene 7%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 7%2C CCT domain protein 7;Note=Circadian-associated rice pseudo response regulator%2C Control of flowering time;Transcript_evidence=AB189038,AK111828;ORF_evidence=Q689G9;GO=Biological Process: phosphorelay signal transduction system (GO:0000160),Molecular Function: protein binding (GO:0005515);InterPro=CheY-like superfamily (IPR011006),Signal transduction response regulator%2C receiver domain (IPR001789),CCT domain (IPR010402);NIAS_FLcDNA=J023064H19;Manual Curation=September 7%2C 2017;Literature_PMID=17132630,15725670,14634161;Oryzabase=7316;Expression=AK111828;TENOR=Os02t0618200-01;KEGG=Os02t0618200-01
Chr02	irgsp1_rep	five_prime_UTR	24569489	24569919	.	+	.	Parent=Os02t0618200-01
Chr02	irgsp1_rep	CDS	24569920	24570079	.	+	0	Parent=Os02t0618200-01
Chr02	irgsp1_rep	CDS	24570211	24570372	.	+	2	Parent=Os02t0618200-01
Chr02	irgsp1_rep	CDS	24570457	24570590	.	+	2	Parent=Os02t0618200-01
Chr02	irgsp1_rep	CDS	24570715	24570882	.	+	0	Parent=Os02t0618200-01
Chr02	irgsp1_rep	CDS	24571088	24571169	.	+	0	Parent=Os02t0618200-01
Chr02	irgsp1_rep	CDS	24571269	24572119	.	+	2	Parent=Os02t0618200-01
Chr02	irgsp1_rep	three_prime_UTR	24572120	24572391	.	+	.	Parent=Os02t0618200-01
Chr02	irgsp1_rep	mRNA	24573423	24575337	.	-	.	ID=Os02t0618250-01;Name=Os02t0618250-01;Locus_id=Os02g0618250;Note=Similar to H/ACA ribonucleoprotein complex subunit 3-like protein.;Transcript_evidence=AK241087 (DDBJ%2C Best hit);ORF_evidence=NP_001150864.1 (RefSeq);InterPro=H/ACA ribonucleoprotein complex%2C subunit Nop10 (IPR007264);NIAS_FLcDNA=J065074D06;TENOR=Os02t0618250-01;KEGG=Os02t0618250-01
Chr02	irgsp1_rep	five_prime_UTR	24575204	24575337	.	-	.	Parent=Os02t0618250-01
Chr02	irgsp1_rep	five_prime_UTR	24575074	24575088	.	-	.	Parent=Os02t0618250-01
Chr02	irgsp1_rep	CDS	24575020	24575073	.	-	0	Parent=Os02t0618250-01
Chr02	irgsp1_rep	CDS	24574868	24574910	.	-	0	Parent=Os02t0618250-01
Chr02	irgsp1_rep	CDS	24573733	24573830	.	-	2	Parent=Os02t0618250-01
Chr02	irgsp1_rep	three_prime_UTR	24573423	24573732	.	-	.	Parent=Os02t0618250-01
Chr02	irgsp1_rep	mRNA	24573731	24575081	.	+	.	ID=Os02t0618301-00;Name=Os02t0618301-00;Locus_id=Os02g0618301;Note=Non-protein coding transcript.;Transcript_evidence=BT016927 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0618301-00
Chr02	irgsp1_rep	exon	24573731	24573810	.	+	.	Parent=Os02t0618301-00
Chr02	irgsp1_rep	exon	24574846	24574910	.	+	.	Parent=Os02t0618301-00
Chr02	irgsp1_rep	exon	24575020	24575081	.	+	.	Parent=Os02t0618301-00
Chr02	irgsp1_rep	mRNA	24580457	24582527	.	-	.	ID=Os02t0618400-02;Name=Os02t0618400-02;Locus_id=Os02g0618400;RAP-DB Gene Symbol Synonym(s)=OsMPS;RAP-DB Gene Name Synonym(s)=MULTIPASS;Oryzabase Gene Symbol Synonym(s)=OsMPS;Oryzabase Gene Name Synonym(s)=MULTIPASS;Note=R2R3-type MYB transcription factor%2C Adaptive growth regulation;Transcript_evidence=AK111807;ORF_evidence=Q6K949;GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: Chromatin binding (GO:0003682);InterPro=Homeodomain-like (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930);NIAS_FLcDNA=J013104N22,J023132O17;Manual Curation=November 22%2C 2013;Literature_PMID=23855375;Oryzabase=13486;TENOR=Os02t0618400-02;KEGG=Os02t0618400-02
Chr02	irgsp1_rep	five_prime_UTR	24582408	24582527	.	-	.	Parent=Os02t0618400-02
Chr02	irgsp1_rep	CDS	24582266	24582407	.	-	0	Parent=Os02t0618400-02
Chr02	irgsp1_rep	CDS	24581555	24581684	.	-	2	Parent=Os02t0618400-02
Chr02	irgsp1_rep	CDS	24580849	24581446	.	-	1	Parent=Os02t0618400-02
Chr02	irgsp1_rep	three_prime_UTR	24580457	24580848	.	-	.	Parent=Os02t0618400-02
Chr02	irgsp1_rep	mRNA	24580911	24581448	.	+	.	ID=Os02t0618525-00;Name=Os02t0618525-00;Locus_id=Os02g0618525;Note=Hypothetical protein.;Transcript_evidence=EU971393 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0618525-00
Chr02	irgsp1_rep	CDS	24580911	24581375	.	+	0	Parent=Os02t0618525-00
Chr02	irgsp1_rep	three_prime_UTR	24581376	24581448	.	+	.	Parent=Os02t0618525-00
Chr02	irgsp1_rep	mRNA	24595175	24596966	.	+	.	ID=Os02t0618700-01;Name=Os02t0618700-01;Locus_id=Os02g0618700;Note=Transmembrane receptor%2C eukaryota domain containing protein.;Transcript_evidence=AK070657 (DDBJ%2C Best hit);ORF_evidence=NP_001151745.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Transmembrane receptor%2C eukaryota (IPR009637);NIAS_FLcDNA=J023056H15;Expression=AK070657;TENOR=Os02t0618700-01;KEGG=Os02t0618700-01
Chr02	irgsp1_rep	five_prime_UTR	24595175	24595238	.	+	.	Parent=Os02t0618700-01
Chr02	irgsp1_rep	CDS	24595239	24596135	.	+	0	Parent=Os02t0618700-01
Chr02	irgsp1_rep	CDS	24596243	24596740	.	+	0	Parent=Os02t0618700-01
Chr02	irgsp1_rep	three_prime_UTR	24596741	24596966	.	+	.	Parent=Os02t0618700-01
Chr02	irgsp1_rep	mRNA	24645508	24650999	.	-	.	ID=Os02t0619600-01;Name=Os02t0619600-01;Locus_id=Os02g0619600;Oryzabase Gene Symbol Synonym(s)=OsRFPH2-15;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPH2-15%2C RING-H2 protein 15;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK072178 (DDBJ%2C Best hit);ORF_evidence=NP_001148048.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),von Willebrand factor%2C type A (IPR002035),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J013145E21;Oryzabase=11776;Expression=AK072178;TENOR=Os02t0619600-01;KEGG=Os02t0619600-01
Chr02	irgsp1_rep	five_prime_UTR	24650932	24650999	.	-	.	Parent=Os02t0619600-01
Chr02	irgsp1_rep	CDS	24650695	24650931	.	-	0	Parent=Os02t0619600-01
Chr02	irgsp1_rep	CDS	24646060	24647952	.	-	0	Parent=Os02t0619600-01
Chr02	irgsp1_rep	three_prime_UTR	24645508	24646059	.	-	.	Parent=Os02t0619600-01
Chr02	irgsp1_rep	mRNA	24647331	24652347	.	+	.	ID=Os02t0619801-01;Name=Os02t0619801-01;Locus_id=Os02g0619801;Note=Hypothetical gene.;Transcript_evidence=AK288882 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090079H14;TENOR=Os02t0619801-01;KEGG=Os02t0619801-01
Chr02	irgsp1_rep	five_prime_UTR	24647331	24651211	.	+	.	Parent=Os02t0619801-01
Chr02	irgsp1_rep	CDS	24651212	24651538	.	+	0	Parent=Os02t0619801-01
Chr02	irgsp1_rep	three_prime_UTR	24651539	24652347	.	+	.	Parent=Os02t0619801-01
Chr02	irgsp1_rep	mRNA	24665979	24666819	.	+	.	ID=Os02t0620000-00;Name=Os02t0620000-00;Locus_id=Os02g0620000;Note=Conserved hypothetical protein.;Transcript_evidence=DQ245018 (DDBJ);ORF_evidence=Q6K9G8 (UniProt);TENOR=Os02t0620000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	24665979	24666143	.	+	0	Parent=Os02t0620000-00
Chr02	irgsp1_rep	CDS	24666250	24666819	.	+	0	Parent=Os02t0620000-00
Chr02	irgsp1_rep	mRNA	24667251	24670792	.	+	.	ID=Os02t0620100-01;Name=Os02t0620100-01;Locus_id=Os02g0620100;Note=Mis12 family protein.;Transcript_evidence=AK061245 (DDBJ%2C Best hit);ORF_evidence=A2X7B2 (UniProt);GO=Biological Process: cell cycle (GO:0007049),Biological Process: mitosis (GO:0007067),Cellular Component: Chromosome%2C centromeric region (GO:0000775),Cellular Component: nucleus (GO:0005634);InterPro=Centromere protein Mis12 (IPR008685);NIAS_FLcDNA=006-211-D09;Expression=AK061245;TENOR=Os02t0620100-01;KEGG=Os02t0620100-01
Chr02	irgsp1_rep	five_prime_UTR	24667251	24667398	.	+	.	Parent=Os02t0620100-01
Chr02	irgsp1_rep	CDS	24667399	24667520	.	+	0	Parent=Os02t0620100-01
Chr02	irgsp1_rep	CDS	24667634	24667697	.	+	1	Parent=Os02t0620100-01
Chr02	irgsp1_rep	CDS	24668889	24669008	.	+	0	Parent=Os02t0620100-01
Chr02	irgsp1_rep	CDS	24669292	24669381	.	+	0	Parent=Os02t0620100-01
Chr02	irgsp1_rep	CDS	24669455	24669593	.	+	0	Parent=Os02t0620100-01
Chr02	irgsp1_rep	CDS	24670271	24670393	.	+	2	Parent=Os02t0620100-01
Chr02	irgsp1_rep	CDS	24670491	24670549	.	+	2	Parent=Os02t0620100-01
Chr02	irgsp1_rep	three_prime_UTR	24670550	24670792	.	+	.	Parent=Os02t0620100-01
Chr02	irgsp1_rep	mRNA	24667290	24670741	.	+	.	ID=Os02t0620100-02;Name=Os02t0620100-02;Locus_id=Os02g0620100;Note=Mis12 family protein.;Transcript_evidence=AK099327 (DDBJ%2C Best hit);ORF_evidence=A2X7B2 (UniProt);GO=Biological Process: cell cycle (GO:0007049),Biological Process: mitosis (GO:0007067),Cellular Component: Chromosome%2C centromeric region (GO:0000775),Cellular Component: nucleus (GO:0005634);InterPro=Centromere protein Mis12 (IPR008685);NIAS_FLcDNA=J033014J17;Expression=AK099327;TENOR=Os02t0620100-02;KEGG=Os02t0620100-02
Chr02	irgsp1_rep	five_prime_UTR	24667290	24667398	.	+	.	Parent=Os02t0620100-02
Chr02	irgsp1_rep	CDS	24667399	24667520	.	+	0	Parent=Os02t0620100-02
Chr02	irgsp1_rep	CDS	24667634	24667697	.	+	1	Parent=Os02t0620100-02
Chr02	irgsp1_rep	CDS	24668889	24669008	.	+	0	Parent=Os02t0620100-02
Chr02	irgsp1_rep	CDS	24669292	24669381	.	+	0	Parent=Os02t0620100-02
Chr02	irgsp1_rep	CDS	24669455	24669593	.	+	0	Parent=Os02t0620100-02
Chr02	irgsp1_rep	CDS	24670271	24670393	.	+	2	Parent=Os02t0620100-02
Chr02	irgsp1_rep	CDS	24670491	24670549	.	+	2	Parent=Os02t0620100-02
Chr02	irgsp1_rep	three_prime_UTR	24670550	24670741	.	+	.	Parent=Os02t0620100-02
Chr02	irgsp1_rep	mRNA	24671261	24671782	.	+	.	ID=Os02t0620200-01;Name=Os02t0620200-01;Locus_id=Os02g0620200;Note=Conserved hypothetical protein.;Transcript_evidence=AK109256 (DDBJ%2C Best hit);ORF_evidence=A2X7B3 (UniProt);NIAS_FLcDNA=002-185-A07;Expression=AK109256;TENOR=Os02t0620200-01;KEGG=Os02t0620200-01
Chr02	irgsp1_rep	five_prime_UTR	24671261	24671403	.	+	.	Parent=Os02t0620200-01
Chr02	irgsp1_rep	CDS	24671404	24671616	.	+	0	Parent=Os02t0620200-01
Chr02	irgsp1_rep	three_prime_UTR	24671617	24671782	.	+	.	Parent=Os02t0620200-01
Chr02	irgsp1_rep	mRNA	24676466	24677324	.	+	.	ID=Os02t0620400-01;Name=Os02t0620400-01;Locus_id=Os02g0620400;Note=RmlC-like jelly roll fold domain containing protein.;Transcript_evidence=AK058853 (DDBJ%2C Best hit);ORF_evidence=NP_001148658.1 (RefSeq);InterPro=Domain of unknown function DUF861%2C cupin-3 (IPR008579),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710);NIAS_FLcDNA=001-005-A12;Expression=AK058853;TENOR=Os02t0620400-01;KEGG=Os02t0620400-01
Chr02	irgsp1_rep	five_prime_UTR	24676466	24676572	.	+	.	Parent=Os02t0620400-01
Chr02	irgsp1_rep	CDS	24676573	24676703	.	+	0	Parent=Os02t0620400-01
Chr02	irgsp1_rep	CDS	24676801	24677011	.	+	1	Parent=Os02t0620400-01
Chr02	irgsp1_rep	three_prime_UTR	24677012	24677324	.	+	.	Parent=Os02t0620400-01
Chr02	irgsp1_rep	mRNA	24683709	24685205	.	+	.	ID=Os02t0620500-00;Name=Os02t0620500-00;Locus_id=Os02g0620500;CGSNL Gene Symbol=AMT1%3B3;CGSNL Gene Name=AMMONIUM TRANSPORTER-1%3B 3;Oryzabase Gene Symbol Synonym(s)=OsAMT1%3B3%2C AMT1-3%2C Osamt1-2%2C "OsAMT1%2C 2"%2C OsAMT1%3B2%2C OsAMT1.3%2C AMT1.2;Oryzabase Gene Name Synonym(s)=ammonium transporter-1%3B3%2C ammonium transporter 1%3B3%2C Ammonium transporter 1 member 3%2C ammonium transporter 1-2%2C "NH4+ transporter 1%2C 2"%2C Ammonium transporter 1%3B2;Note=Similar to Ammonium transporter Amt1%3B2 (Fragment).;Transcript_evidence=Q6K9G3 (UniProt);ORF_evidence=Q6K9G3 (UniProt);GO=Biological Process: ammonium transmembrane transport (GO:0072488),Cellular Component: membrane (GO:0016020),Molecular Function: ammonium transmembrane transporter activity (GO:0008519);InterPro=Ammonium transporter (IPR001905),Ammonium transporter%2C conserved site (IPR018047),Ammonium transporter AmtB-like (IPR024041);Oryzabase=2270;TENOR=Os02t0620500-00
Chr02	irgsp1_rep	CDS	24683709	24685205	.	+	0	Parent=Os02t0620500-00
Chr02	irgsp1_rep	mRNA	24683711	24685162	.	-	.	ID=Os02t0620533-00;Name=Os02t0620533-00;Locus_id=Os02g0620533;Note=Hypothetical protein.;Transcript_evidence=tplb0026k04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0620533-00
Chr02	irgsp1_rep	five_prime_UTR	24685161	24685162	.	-	.	Parent=Os02t0620533-00
Chr02	irgsp1_rep	CDS	24684417	24685160	.	-	0	Parent=Os02t0620533-00
Chr02	irgsp1_rep	three_prime_UTR	24683711	24684416	.	-	.	Parent=Os02t0620533-00
Chr02	irgsp1_rep	mRNA	24690869	24692425	.	-	.	ID=Os02t0620566-00;Name=Os02t0620566-00;Locus_id=Os02g0620566;Note=Hypothetical protein.;Transcript_evidence=tplb0026k04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0620566-00
Chr02	irgsp1_rep	five_prime_UTR	24692425	24692425	.	-	.	Parent=Os02t0620566-00
Chr02	irgsp1_rep	CDS	24691537	24692424	.	-	0	Parent=Os02t0620566-00
Chr02	irgsp1_rep	three_prime_UTR	24690869	24691536	.	-	.	Parent=Os02t0620566-00
Chr02	irgsp1_rep	mRNA	24690884	24692736	.	+	.	ID=Os02t0620600-01;Name=Os02t0620600-01;Locus_id=Os02g0620600;RAP-DB Gene Symbol Synonym(s)=AMT1%3B2%2C OsAMT1%3B2%2C AMT1-2%2C Osamt1-3%2C "OsAMT1%2C3"%2C OsAMT1%3B3%2C OsAMT1.3%2C OsAMT1.2;RAP-DB Gene Name Synonym(s)=AMMONIUM TRANSPORTER-1%3B 2%2C ammonium transporter-1%3B2%2C ammonium transporter 1%3B2%2C Ammonium transporter 1 member 2%2C ammonium transporter 1-3%2C "NH4+ transporter 1%2C3"%2C ammonium transporter 1%3B3;CGSNL Gene Symbol=AMT1%3B2;CGSNL Gene Name=AMMONIUM TRANSPORTER-1%3B 2;Oryzabase Gene Symbol Synonym(s)=OsAMT1%3B2%2C AMT1-2%2C Osamt1-3%2C "OsAMT1%2C 3"%2C OsAMT1%3B3%2C OsAMT1.3%2C OsAMT1.2%2C AMT1.2;Oryzabase Gene Name Synonym(s)=ammonium transporter-1%3B2%2C ammonium transporter 1%3B2%2C Ammonium transporter 1 member 2%2C ammonium transporter 1-3%2C "NH4+ transporter 1%2C 3";Note=Ammonium transporter%2C Ammonium uptake;Transcript_evidence=AK107204,AF289479;ORF_evidence=Q6K9G1;GO=Biological Process: ammonium transport (GO:0015696),Biological Process: ammonium transmembrane transport (GO:0072488),Molecular Function: ammonium transmembrane transporter activity (GO:0008519),Cellular Component: membrane (GO:0016020);InterPro=Ammonium transporter (IPR001905),Ammonium/urea transporter (IPR029020),Ammonium transporter AmtB-like domain (IPR024041),Ammonium transporter%2C conserved site (IPR018047);NIAS_FLcDNA=002-125-B07;Manual Curation=July 21%2C 2016;Literature_PMID=27423220,12881500;Oryzabase=2269;Expression=AK107204;TENOR=Os02t0620600-01;KEGG=Os02t0620600-01
Chr02	irgsp1_rep	five_prime_UTR	24690884	24690954	.	+	.	Parent=Os02t0620600-01
Chr02	irgsp1_rep	CDS	24690955	24692445	.	+	0	Parent=Os02t0620600-01
Chr02	irgsp1_rep	three_prime_UTR	24692446	24692736	.	+	.	Parent=Os02t0620600-01
Chr02	irgsp1_rep	mRNA	24695219	24698501	.	-	.	ID=Os02t0620800-01;Name=Os02t0620800-01;Locus_id=Os02g0620800;Note=Conserved hypothetical protein.;Transcript_evidence=AK287467 (DDBJ%2C Best hit);ORF_evidence=B9F149 (UniProt);NIAS_FLcDNA=J043021K18;TENOR=Os02t0620800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	24697995	24698501	.	-	0	Parent=Os02t0620800-01
Chr02	irgsp1_rep	three_prime_UTR	24696640	24697994	.	-	.	Parent=Os02t0620800-01
Chr02	irgsp1_rep	three_prime_UTR	24696463	24696546	.	-	.	Parent=Os02t0620800-01
Chr02	irgsp1_rep	three_prime_UTR	24696228	24696356	.	-	.	Parent=Os02t0620800-01
Chr02	irgsp1_rep	three_prime_UTR	24695987	24696121	.	-	.	Parent=Os02t0620800-01
Chr02	irgsp1_rep	three_prime_UTR	24695219	24695803	.	-	.	Parent=Os02t0620800-01
Chr02	irgsp1_rep	mRNA	24708074	24717284	.	+	.	ID=Os02t0621100-01;Name=Os02t0621100-01;Locus_id=Os02g0621100;Oryzabase Gene Symbol Synonym(s)=OsSET10%2C SDG712;Oryzabase Gene Name Synonym(s)=SET protein 10;Note=Similar to Su(VAR)3-9-related protein 4.;Transcript_evidence=AK100391 (DDBJ%2C Best hit);ORF_evidence=B8AFI2 (UniProt);GO=Biological Process: histone lysine methylation (GO:0034968),Cellular Component: nucleus (GO:0005634),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: histone-lysine N-methyltransferase activity (GO:0018024);InterPro=SET domain (IPR001214),Pre-SET domain (IPR007728),WIYLD domain (IPR018848);NIAS_FLcDNA=J023086A12;Oryzabase=13376;Expression=AK100391;TENOR=Os02t0621100-01;KEGG=Os02t0621100-01
Chr02	irgsp1_rep	five_prime_UTR	24708074	24708230	.	+	.	Parent=Os02t0621100-01
Chr02	irgsp1_rep	five_prime_UTR	24710823	24710857	.	+	.	Parent=Os02t0621100-01
Chr02	irgsp1_rep	CDS	24710858	24710904	.	+	0	Parent=Os02t0621100-01
Chr02	irgsp1_rep	CDS	24711690	24711885	.	+	1	Parent=Os02t0621100-01
Chr02	irgsp1_rep	CDS	24712039	24712423	.	+	0	Parent=Os02t0621100-01
Chr02	irgsp1_rep	CDS	24713939	24715035	.	+	2	Parent=Os02t0621100-01
Chr02	irgsp1_rep	CDS	24715228	24715493	.	+	0	Parent=Os02t0621100-01
Chr02	irgsp1_rep	CDS	24716172	24716238	.	+	1	Parent=Os02t0621100-01
Chr02	irgsp1_rep	CDS	24716329	24716379	.	+	0	Parent=Os02t0621100-01
Chr02	irgsp1_rep	CDS	24716640	24716730	.	+	0	Parent=Os02t0621100-01
Chr02	irgsp1_rep	CDS	24716927	24716952	.	+	2	Parent=Os02t0621100-01
Chr02	irgsp1_rep	three_prime_UTR	24716953	24717284	.	+	.	Parent=Os02t0621100-01
Chr02	irgsp1_rep	mRNA	24718047	24724116	.	-	.	ID=Os02t0621300-01;Name=Os02t0621300-01;Locus_id=Os02g0621300;RAP-DB Gene Symbol Synonym(s)=OsCER1;RAP-DB Gene Name Synonym(s)=ECERIFERUM1;CGSNL Gene Symbol=CER1;CGSNL Gene Name=ECERIFERUM 1;Oryzabase Gene Symbol Synonym(s)=OsCER1%2C OsGL1-4%2C GL1-4%2C Os CER1;Oryzabase Gene Name Synonym(s)=ECERIFERUM 1%2C Glossy1-homologous gene 4;Note=Homologous protein of CER1%2C Very-long-chain (VLC) alkane biosynthesis%2C Regulation of anther development and plastids differentiation;Transcript_evidence=AK066386;ORF_evidence=Q6K9F6;GO=Biological Process: lipid biosynthetic process (GO:0008610),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Fatty acid hydroxylase (IPR006694),Uncharacterised domain Wax2%2C C-terminal (IPR021940);NIAS_FLcDNA=J013066F17;Manual Curation=October 4%2C 2018;Literature_PMID=30237804;Oryzabase=13559;Expression=AK066386;TENOR=Os02t0621300-01;KEGG=Os02t0621300-01;Subcellular location=endoplasmic reticulum (GO:0005783)
Chr02	irgsp1_rep	five_prime_UTR	24724010	24724116	.	-	.	Parent=Os02t0621300-01
Chr02	irgsp1_rep	CDS	24723950	24724009	.	-	0	Parent=Os02t0621300-01
Chr02	irgsp1_rep	CDS	24723476	24723699	.	-	0	Parent=Os02t0621300-01
Chr02	irgsp1_rep	CDS	24723142	24723374	.	-	1	Parent=Os02t0621300-01
Chr02	irgsp1_rep	CDS	24720569	24720788	.	-	2	Parent=Os02t0621300-01
Chr02	irgsp1_rep	CDS	24720036	24720417	.	-	1	Parent=Os02t0621300-01
Chr02	irgsp1_rep	CDS	24719841	24719948	.	-	0	Parent=Os02t0621300-01
Chr02	irgsp1_rep	CDS	24719345	24719545	.	-	0	Parent=Os02t0621300-01
Chr02	irgsp1_rep	CDS	24719141	24719239	.	-	0	Parent=Os02t0621300-01
Chr02	irgsp1_rep	CDS	24718812	24718982	.	-	0	Parent=Os02t0621300-01
Chr02	irgsp1_rep	CDS	24718560	24718721	.	-	0	Parent=Os02t0621300-01
Chr02	irgsp1_rep	three_prime_UTR	24718047	24718559	.	-	.	Parent=Os02t0621300-01
Chr02	irgsp1_rep	mRNA	24718810	24719020	.	+	.	ID=Os02t0621350-00;Name=Os02t0621350-00;Locus_id=Os02g0621350;Note=Non-protein coding transcript.;Transcript_evidence=FP092318 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0621350-00
Chr02	irgsp1_rep	exon	24718810	24719020	.	+	.	Parent=Os02t0621350-00
Chr02	irgsp1_rep	mRNA	24724834	24725483	.	+	.	ID=Os02t0621400-01;Name=Os02t0621400-01;Locus_id=Os02g0621400;Note=Hypothetical protein.;Transcript_evidence=AK108224 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-140-F02;Expression=AK108224;TENOR=Os02t0621400-01;KEGG=Os02t0621400-01
Chr02	irgsp1_rep	five_prime_UTR	24724834	24724869	.	+	.	Parent=Os02t0621400-01
Chr02	irgsp1_rep	CDS	24724870	24725268	.	+	0	Parent=Os02t0621400-01
Chr02	irgsp1_rep	three_prime_UTR	24725269	24725483	.	+	.	Parent=Os02t0621400-01
Chr02	irgsp1_rep	mRNA	24728393	24733113	.	-	.	ID=Os02t0621500-01;Name=Os02t0621500-01;Locus_id=Os02g0621500;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK120798 (DDBJ%2C Best hit);ORF_evidence=B8AFI4 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C ZZ-type (IPR000433),Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J023012G01;Expression=AK120798;TENOR=Os02t0621500-01;KEGG=Os02t0621500-01
Chr02	irgsp1_rep	five_prime_UTR	24732911	24733113	.	-	.	Parent=Os02t0621500-01
Chr02	irgsp1_rep	CDS	24732768	24732910	.	-	0	Parent=Os02t0621500-01
Chr02	irgsp1_rep	CDS	24732122	24732150	.	-	1	Parent=Os02t0621500-01
Chr02	irgsp1_rep	CDS	24731852	24732031	.	-	2	Parent=Os02t0621500-01
Chr02	irgsp1_rep	CDS	24730961	24731032	.	-	2	Parent=Os02t0621500-01
Chr02	irgsp1_rep	CDS	24730704	24730874	.	-	2	Parent=Os02t0621500-01
Chr02	irgsp1_rep	CDS	24730422	24730622	.	-	2	Parent=Os02t0621500-01
Chr02	irgsp1_rep	CDS	24729454	24729566	.	-	2	Parent=Os02t0621500-01
Chr02	irgsp1_rep	CDS	24728566	24728883	.	-	0	Parent=Os02t0621500-01
Chr02	irgsp1_rep	three_prime_UTR	24728393	24728565	.	-	.	Parent=Os02t0621500-01
Chr02	irgsp1_rep	mRNA	24738160	24739291	.	-	.	ID=Os02t0621600-01;Name=Os02t0621600-01;Locus_id=Os02g0621600;Note=Similar to OSIGBa0157K09-H0214G12.24 protein.;Transcript_evidence=AK071074 (DDBJ%2C Best hit);ORF_evidence=Q01HD3 (UniProt);NIAS_FLcDNA=J023078O20;Expression=AK071074;TENOR=Os02t0621600-01;KEGG=Os02t0621600-01
Chr02	irgsp1_rep	five_prime_UTR	24739013	24739291	.	-	.	Parent=Os02t0621600-01
Chr02	irgsp1_rep	CDS	24738542	24739012	.	-	0	Parent=Os02t0621600-01
Chr02	irgsp1_rep	three_prime_UTR	24738160	24738541	.	-	.	Parent=Os02t0621600-01
Chr02	irgsp1_rep	mRNA	24736978	24739287	.	-	.	ID=Os02t0621600-02;Name=Os02t0621600-02;Locus_id=Os02g0621600;Note=Similar to OSIGBa0157K09-H0214G12.24 protein.;Transcript_evidence=AK108575 (DDBJ%2C Best hit);ORF_evidence=Q01HD3 (UniProt);NIAS_FLcDNA=002-145-F12;Expression=AK108575;TENOR=Os02t0621600-02;KEGG=Os02t0621600-02
Chr02	irgsp1_rep	five_prime_UTR	24739013	24739287	.	-	.	Parent=Os02t0621600-02
Chr02	irgsp1_rep	CDS	24738542	24739012	.	-	0	Parent=Os02t0621600-02
Chr02	irgsp1_rep	three_prime_UTR	24738414	24738541	.	-	.	Parent=Os02t0621600-02
Chr02	irgsp1_rep	three_prime_UTR	24736978	24737551	.	-	.	Parent=Os02t0621600-02
Chr02	irgsp1_rep	mRNA	24741811	24747949	.	+	.	ID=Os02t0621700-01;Name=Os02t0621700-01;Locus_id=Os02g0621700;CGSNL Gene Symbol=SCSB;CGSNL Gene Name=SUCCINYL-COA SYNTHETASE PROTEIN B-CHAIN;Oryzabase Gene Symbol Synonym(s)=OsSCSb;Oryzabase Gene Name Synonym(s)=succinyl-CoA synthetase protein b-chain;Note=Similar to Succinyl-CoA ligase [GDP-forming] beta-chain%2C mitochondrial precursor (EC 6.2.1.4) (Succinyl-CoA synthetase%2C beta chain) (SCS-beta).;Transcript_evidence=AK101006 (DDBJ%2C Best hit),AK103525 (DDBJ%2C Best hit);ORF_evidence=NP_001150653.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524),Molecular Function: ligase activity (GO:0016874),Molecular Function: metal ion binding (GO:0046872);InterPro=Succinyl-CoA synthetase%2C beta subunit (IPR005809),ATP-citrate lyase/succinyl-CoA ligase (IPR005811),ATP-grasp fold (IPR011761),ATP-grasp fold%2C succinyl-CoA synthetase-type (IPR013650),ATP-grasp fold%2C subdomain 1 (IPR013815),ATP-grasp fold%2C subdomain 2 (IPR013816),Succinyl-CoA synthetase-like (IPR016102),Succinyl-CoA synthetase%2C beta subunit%2C conserved site (IPR017866);NIAS_FLcDNA=J023148E03,J033131K22;Oryzabase=22687;TENOR=Os02t0621700-01
Chr02	irgsp1_rep	five_prime_UTR	24741811	24741929	.	+	.	Parent=Os02t0621700-01
Chr02	irgsp1_rep	CDS	24741930	24742031	.	+	0	Parent=Os02t0621700-01
Chr02	irgsp1_rep	CDS	24742172	24742282	.	+	0	Parent=Os02t0621700-01
Chr02	irgsp1_rep	CDS	24742968	24743079	.	+	0	Parent=Os02t0621700-01
Chr02	irgsp1_rep	CDS	24743656	24743720	.	+	2	Parent=Os02t0621700-01
Chr02	irgsp1_rep	CDS	24744334	24744411	.	+	0	Parent=Os02t0621700-01
Chr02	irgsp1_rep	CDS	24745157	24745231	.	+	0	Parent=Os02t0621700-01
Chr02	irgsp1_rep	CDS	24745354	24745506	.	+	0	Parent=Os02t0621700-01
Chr02	irgsp1_rep	CDS	24745595	24745729	.	+	0	Parent=Os02t0621700-01
Chr02	irgsp1_rep	CDS	24745932	24746096	.	+	0	Parent=Os02t0621700-01
Chr02	irgsp1_rep	CDS	24746525	24746647	.	+	0	Parent=Os02t0621700-01
Chr02	irgsp1_rep	CDS	24747126	24747197	.	+	0	Parent=Os02t0621700-01
Chr02	irgsp1_rep	CDS	24747295	24747372	.	+	0	Parent=Os02t0621700-01
Chr02	irgsp1_rep	three_prime_UTR	24747373	24747949	.	+	.	Parent=Os02t0621700-01
Chr02	irgsp1_rep	mRNA	24749451	24754760	.	-	.	ID=Os02t0621800-01;Name=Os02t0621800-01;Locus_id=Os02g0621800;RAP-DB Gene Symbol Synonym(s)=HWH1%2C hwh1;RAP-DB Gene Name Synonym(s)=HYBRID WEAKNESS H1%2C hybrid weakness h1;CGSNL Gene Symbol=HWH1;CGSNL Gene Name=HYBRID WEAKNESS H1;Oryzabase Gene Symbol Synonym(s)=hwh1;Oryzabase Gene Name Synonym(s)=hybrid weakness h1;Note=Glucose-methanol-choline (GMC) oxidoreductase family protein%2C Hybrid breakdown (HB);Transcript_evidence=AK100308 (Genbank);ORF_evidence=Q6K9N5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: long-chain-alcohol oxidase activity (GO:0046577),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Glucose-methanol-choline oxidoreductase%2C N-terminal (IPR000172),Glucose-methanol-choline oxidoreductase%2C C-terminal (IPR007867),Alcohol dehydrogenase%2C long-chain fatty (IPR012400);NIAS_FLcDNA=J023078I11;Manual Curation=July 10%2C 2009;Literature_PMID=18335199;Oryzabase=8202;Expression=AK100308;TENOR=Os02t0621800-01;KEGG=Os02t0621800-01
Chr02	irgsp1_rep	five_prime_UTR	24754573	24754760	.	-	.	Parent=Os02t0621800-01
Chr02	irgsp1_rep	CDS	24754282	24754572	.	-	0	Parent=Os02t0621800-01
Chr02	irgsp1_rep	CDS	24753914	24754189	.	-	0	Parent=Os02t0621800-01
Chr02	irgsp1_rep	CDS	24749676	24751421	.	-	0	Parent=Os02t0621800-01
Chr02	irgsp1_rep	three_prime_UTR	24749451	24749675	.	-	.	Parent=Os02t0621800-01
Chr02	irgsp1_rep	mRNA	24753916	24754907	.	+	.	ID=Os02t0621850-01;Name=Os02t0621850-01;Locus_id=Os02g0621850;Note=Hypothetical gene.;Transcript_evidence=AK287565 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065027K22;TENOR=Os02t0621850-01;KEGG=Os02t0621850-01
Chr02	irgsp1_rep	five_prime_UTR	24753916	24753916	.	+	.	Parent=Os02t0621850-01
Chr02	irgsp1_rep	CDS	24753917	24754231	.	+	0	Parent=Os02t0621850-01
Chr02	irgsp1_rep	three_prime_UTR	24754232	24754907	.	+	.	Parent=Os02t0621850-01
Chr02	irgsp1_rep	mRNA	24766809	24772750	.	+	.	ID=Os02t0622100-01;Name=Os02t0622100-01;Locus_id=Os02g0622100;RAP-DB Gene Symbol Synonym(s)=HBD2%2C OsCKI1%2C CKI%2C hbd2%2C CKI1%2C LTG1%2C OsCKI1/LTRPK1;RAP-DB Gene Name Synonym(s)=HYBRID BREAKDOWN 2%2C hybrid breakdown 2%2C rice casein Kinase I%2C casein kinase I%2C Low Temperature Growth 1;CGSNL Gene Symbol=HBD2;CGSNL Gene Name=HYBRID BREAKDOWN 2;Oryzabase Gene Symbol Synonym(s)=OsCKI1%2C CKI%2C hbd2%2C CKI1%2C LTG1%2C OsCKI1/LTRPK1%2C LTRPK1%2C OsLTRPK1;Oryzabase Gene Name Synonym(s)=hybrid breakdown 2%2C rice casein Kinase I%2C casein kinase I%2C Low Temperature Growth 1%2C low-temperature response protein kinase 1;Note=Casein kinase I%2C Low temperature tolerance%2C Root development%2C Hormone sensitivity;Transcript_evidence=AK101388,AJ487966 (Zhonghua 11);ORF_evidence=Q6K9N1,Q70YQ4 (Zhonghua 11);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine/threonine/dual specificity protein kinase%2C catalytic  domain (IPR002290),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J033036G08;Manual Curation=January 28%2C 2015;Literature_PMID=24635058,14535884;Oryzabase=3121;TENOR=Os02t0622100-01;KEGG=Os02t0622100-01 (EC:2.7.11.1)
Chr02	irgsp1_rep	five_prime_UTR	24766809	24767323	.	+	.	Parent=Os02t0622100-01
Chr02	irgsp1_rep	CDS	24767324	24767399	.	+	0	Parent=Os02t0622100-01
Chr02	irgsp1_rep	CDS	24767532	24767572	.	+	2	Parent=Os02t0622100-01
Chr02	irgsp1_rep	CDS	24768661	24768730	.	+	0	Parent=Os02t0622100-01
Chr02	irgsp1_rep	CDS	24768804	24768952	.	+	2	Parent=Os02t0622100-01
Chr02	irgsp1_rep	CDS	24769098	24769193	.	+	0	Parent=Os02t0622100-01
Chr02	irgsp1_rep	CDS	24769820	24769890	.	+	0	Parent=Os02t0622100-01
Chr02	irgsp1_rep	CDS	24770486	24770547	.	+	1	Parent=Os02t0622100-01
Chr02	irgsp1_rep	CDS	24770782	24770845	.	+	2	Parent=Os02t0622100-01
Chr02	irgsp1_rep	CDS	24770933	24771017	.	+	1	Parent=Os02t0622100-01
Chr02	irgsp1_rep	CDS	24771122	24771248	.	+	0	Parent=Os02t0622100-01
Chr02	irgsp1_rep	CDS	24771321	24771382	.	+	2	Parent=Os02t0622100-01
Chr02	irgsp1_rep	CDS	24771470	24771530	.	+	0	Parent=Os02t0622100-01
Chr02	irgsp1_rep	CDS	24771621	24771754	.	+	2	Parent=Os02t0622100-01
Chr02	irgsp1_rep	CDS	24771962	24772255	.	+	0	Parent=Os02t0622100-01
Chr02	irgsp1_rep	three_prime_UTR	24772256	24772750	.	+	.	Parent=Os02t0622100-01
Chr02	irgsp1_rep	mRNA	24768804	24771258	.	-	.	ID=Os02t0622150-00;Name=Os02t0622150-00;Locus_id=Os02g0622150;Note=Non-protein coding transcript.;Transcript_evidence=tplb0035e01 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os02t0622150-00
Chr02	irgsp1_rep	exon	24771110	24771258	.	-	.	Parent=Os02t0622150-00
Chr02	irgsp1_rep	exon	24770920	24771006	.	-	.	Parent=Os02t0622150-00
Chr02	irgsp1_rep	exon	24770777	24770833	.	-	.	Parent=Os02t0622150-00
Chr02	irgsp1_rep	exon	24770481	24770537	.	-	.	Parent=Os02t0622150-00
Chr02	irgsp1_rep	exon	24769807	24769883	.	-	.	Parent=Os02t0622150-00
Chr02	irgsp1_rep	exon	24769082	24769695	.	-	.	Parent=Os02t0622150-00
Chr02	irgsp1_rep	exon	24768804	24768937	.	-	.	Parent=Os02t0622150-00
Chr02	irgsp1_rep	mRNA	24773729	24775040	.	-	.	ID=Os02t0622200-01;Name=Os02t0622200-01;Locus_id=Os02g0622200;Note=Phosphatidylinositol N-acetylglucosaminyltransferase family protein.;Transcript_evidence=AK102142 (DDBJ%2C Best hit);ORF_evidence=NP_181043.1 (RefSeq);GO=Biological Process: GPI anchor biosynthetic process (GO:0006506),Cellular Component: integral to membrane (GO:0016021),Molecular Function: phosphatidylinositol N-acetylglucosaminyltransferase activity (GO:0017176);InterPro=Phosphatidylinositol N-acetylglucosaminyltransferase (IPR009450);NIAS_FLcDNA=J033085M22;Expression=AK102142;TENOR=Os02t0622200-01;KEGG=Os02t0622200-01
Chr02	irgsp1_rep	five_prime_UTR	24774717	24775040	.	-	.	Parent=Os02t0622200-01
Chr02	irgsp1_rep	CDS	24773826	24774716	.	-	0	Parent=Os02t0622200-01
Chr02	irgsp1_rep	three_prime_UTR	24773729	24773825	.	-	.	Parent=Os02t0622200-01
Chr02	irgsp1_rep	mRNA	24777909	24779595	.	-	.	ID=Os02t0622300-00;Name=Os02t0622300-00;Locus_id=Os02g0622300;Oryzabase Gene Symbol Synonym(s)=OsRPL14%2C RPL14;Oryzabase Gene Name Synonym(s)=ribosomal protein L14%2C ribosomal protein large subunit 14;Note=Ribosomal protein L14 family protein.;Transcript_evidence=CT837665 (DDBJ%2C Best hit);ORF_evidence=Q01I11 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L14 (IPR002784),Translation protein SH3-like%2C subgroup (IPR014722);Oryzabase=22195;TENOR=Os02t0622300-00;KEGG=Os02t0622300-00
Chr02	irgsp1_rep	five_prime_UTR	24779561	24779595	.	-	.	Parent=Os02t0622300-00
Chr02	irgsp1_rep	CDS	24779558	24779560	.	-	0	Parent=Os02t0622300-00
Chr02	irgsp1_rep	CDS	24779334	24779435	.	-	0	Parent=Os02t0622300-00
Chr02	irgsp1_rep	CDS	24778421	24778550	.	-	0	Parent=Os02t0622300-00
Chr02	irgsp1_rep	CDS	24778221	24778333	.	-	2	Parent=Os02t0622300-00
Chr02	irgsp1_rep	CDS	24778084	24778140	.	-	0	Parent=Os02t0622300-00
Chr02	irgsp1_rep	three_prime_UTR	24777909	24778083	.	-	.	Parent=Os02t0622300-00
Chr02	irgsp1_rep	mRNA	24777991	24779399	.	+	.	ID=Os02t0622350-00;Name=Os02t0622350-00;Locus_id=Os02g0622350;Note=Similar to Root abundant protein.;Transcript_evidence=U91834 (DDBJ);ORF_evidence=O04075 (UniProt);TENOR=Os02t0622350-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	24777991	24778087	.	+	.	Parent=Os02t0622350-00
Chr02	irgsp1_rep	CDS	24778088	24778140	.	+	0	Parent=Os02t0622350-00
Chr02	irgsp1_rep	CDS	24778221	24778322	.	+	1	Parent=Os02t0622350-00
Chr02	irgsp1_rep	CDS	24778403	24778546	.	+	1	Parent=Os02t0622350-00
Chr02	irgsp1_rep	CDS	24779323	24779362	.	+	1	Parent=Os02t0622350-00
Chr02	irgsp1_rep	three_prime_UTR	24779363	24779399	.	+	.	Parent=Os02t0622350-00
Chr02	irgsp1_rep	mRNA	24779930	24782717	.	+	.	ID=Os02t0622400-01;Name=Os02t0622400-01;Locus_id=Os02g0622400;Note=Glycolipid transfer protein%2C GLTP domain containing protein.;Transcript_evidence=AK061679 (DDBJ%2C Best hit);ORF_evidence=NP_001149896.1 (RefSeq);GO=Biological Process: glycolipid transport (GO:0046836),Cellular Component: cytoplasm (GO:0005737),Molecular Function: glycolipid transporter activity (GO:0017089),Molecular Function: glycolipid binding (GO:0051861);InterPro=Glycolipid transfer protein domain (IPR014830);NIAS_FLcDNA=001-036-H10;Expression=AK061679;TENOR=Os02t0622400-01;KEGG=Os02t0622400-01
Chr02	irgsp1_rep	five_prime_UTR	24779930	24780062	.	+	.	Parent=Os02t0622400-01
Chr02	irgsp1_rep	five_prime_UTR	24780558	24780565	.	+	.	Parent=Os02t0622400-01
Chr02	irgsp1_rep	CDS	24780566	24780683	.	+	0	Parent=Os02t0622400-01
Chr02	irgsp1_rep	CDS	24781204	24781259	.	+	2	Parent=Os02t0622400-01
Chr02	irgsp1_rep	CDS	24781471	24781601	.	+	0	Parent=Os02t0622400-01
Chr02	irgsp1_rep	CDS	24781683	24781818	.	+	1	Parent=Os02t0622400-01
Chr02	irgsp1_rep	CDS	24782233	24782364	.	+	0	Parent=Os02t0622400-01
Chr02	irgsp1_rep	CDS	24782454	24782489	.	+	0	Parent=Os02t0622400-01
Chr02	irgsp1_rep	three_prime_UTR	24782490	24782717	.	+	.	Parent=Os02t0622400-01
Chr02	irgsp1_rep	mRNA	24783201	24786542	.	-	.	ID=Os02t0622500-01;Name=Os02t0622500-01;Locus_id=Os02g0622500;Note=Conserved hypothetical protein.;Transcript_evidence=AK067651 (DDBJ%2C Best hit);ORF_evidence=A3A970 (UniProt);NIAS_FLcDNA=J013113P22;TENOR=Os02t0622500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	24786284	24786542	.	-	.	Parent=Os02t0622500-01
Chr02	irgsp1_rep	CDS	24786092	24786283	.	-	0	Parent=Os02t0622500-01
Chr02	irgsp1_rep	CDS	24785312	24785489	.	-	0	Parent=Os02t0622500-01
Chr02	irgsp1_rep	CDS	24785222	24785226	.	-	2	Parent=Os02t0622500-01
Chr02	irgsp1_rep	three_prime_UTR	24783985	24785221	.	-	.	Parent=Os02t0622500-01
Chr02	irgsp1_rep	three_prime_UTR	24783785	24783881	.	-	.	Parent=Os02t0622500-01
Chr02	irgsp1_rep	three_prime_UTR	24783611	24783696	.	-	.	Parent=Os02t0622500-01
Chr02	irgsp1_rep	three_prime_UTR	24783201	24783528	.	-	.	Parent=Os02t0622500-01
Chr02	irgsp1_rep	mRNA	24819271	24820066	.	+	.	ID=Os02t0623300-01;Name=Os02t0623300-01;Locus_id=Os02g0623300;CGSNL Gene Symbol=NAC51;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 51;Oryzabase Gene Symbol Synonym(s)=ONAC051%2C ONAC51;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 051%2C NAC domain-containing protein 51;Note=Conserved hypothetical protein.;Transcript_evidence=AK105122 (DDBJ%2C Best hit);ORF_evidence=A3A972 (UniProt);NIAS_FLcDNA=001-101-C03;Oryzabase=15837;TENOR=Os02t0623300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	24819271	24819326	.	+	.	Parent=Os02t0623300-01
Chr02	irgsp1_rep	CDS	24819327	24819818	.	+	0	Parent=Os02t0623300-01
Chr02	irgsp1_rep	three_prime_UTR	24819819	24820066	.	+	.	Parent=Os02t0623300-01
Chr02	irgsp1_rep	mRNA	24830558	24831992	.	-	.	ID=Os02t0623400-00;Name=Os02t0623400-00;Locus_id=Os02g0623400;CGSNL Gene Symbol=G1L3;CGSNL Gene Name=G1 LIKE PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsG1L3;Note=Similar to G1-like protein.;Transcript_evidence=CT837746 (DDBJ%2C Best hit);ORF_evidence=D1MYE3 (UniProt);InterPro=Domain of unknown function DUF640 (IPR006936);Oryzabase=8884;TENOR=Os02t0623400-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	24831774	24831992	.	-	.	Parent=Os02t0623400-00
Chr02	irgsp1_rep	five_prime_UTR	24831606	24831690	.	-	.	Parent=Os02t0623400-00
Chr02	irgsp1_rep	five_prime_UTR	24831326	24831332	.	-	.	Parent=Os02t0623400-00
Chr02	irgsp1_rep	CDS	24830696	24831325	.	-	0	Parent=Os02t0623400-00
Chr02	irgsp1_rep	three_prime_UTR	24830558	24830695	.	-	.	Parent=Os02t0623400-00
Chr02	irgsp1_rep	mRNA	24848196	24860061	.	-	.	ID=Os02t0623500-01;Name=Os02t0623500-01;Locus_id=Os02g0623500;Note=Lysyl-tRNA synthetase%2C class II domain containing protein.;Transcript_evidence=AK066521 (DDBJ%2C Best hit);ORF_evidence=B9F159 (UniProt);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: lysyl-tRNA aminoacylation (GO:0006430),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: lysine-tRNA ligase activity (GO:0004824),Molecular Function: ATP binding (GO:0005524);InterPro=Lysyl-tRNA synthetase%2C class II (IPR002313),Aminoacyl-tRNA synthetase%2C class II (D/K/N) (IPR004364),Nucleic acid binding%2C OB-fold%2C tRNA/helicase-type (IPR004365),Aminoacyl-tRNA synthetase%2C class II (IPR006195),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),Lysyl-tRNA synthetase%2C class II%2C C-terminal (IPR018149),Aminoacyl-tRNA synthetase%2C class II (D/K/N)-like (IPR018150);NIAS_FLcDNA=J013071I10;Expression=AK066521;TENOR=Os02t0623500-01;KEGG=Os02t0623500-01 (EC:6.1.1.6)
Chr02	irgsp1_rep	five_prime_UTR	24860054	24860061	.	-	.	Parent=Os02t0623500-01
Chr02	irgsp1_rep	CDS	24859811	24860053	.	-	0	Parent=Os02t0623500-01
Chr02	irgsp1_rep	CDS	24859499	24859711	.	-	0	Parent=Os02t0623500-01
Chr02	irgsp1_rep	CDS	24858110	24858221	.	-	0	Parent=Os02t0623500-01
Chr02	irgsp1_rep	CDS	24857317	24857425	.	-	2	Parent=Os02t0623500-01
Chr02	irgsp1_rep	CDS	24856715	24856772	.	-	1	Parent=Os02t0623500-01
Chr02	irgsp1_rep	CDS	24856283	24856351	.	-	0	Parent=Os02t0623500-01
Chr02	irgsp1_rep	CDS	24854579	24854686	.	-	0	Parent=Os02t0623500-01
Chr02	irgsp1_rep	CDS	24854152	24854244	.	-	0	Parent=Os02t0623500-01
Chr02	irgsp1_rep	CDS	24853842	24853946	.	-	0	Parent=Os02t0623500-01
Chr02	irgsp1_rep	CDS	24851978	24852175	.	-	0	Parent=Os02t0623500-01
Chr02	irgsp1_rep	CDS	24851086	24851180	.	-	0	Parent=Os02t0623500-01
Chr02	irgsp1_rep	CDS	24849615	24849705	.	-	1	Parent=Os02t0623500-01
Chr02	irgsp1_rep	CDS	24848771	24848944	.	-	0	Parent=Os02t0623500-01
Chr02	irgsp1_rep	CDS	24848560	24848652	.	-	0	Parent=Os02t0623500-01
Chr02	irgsp1_rep	three_prime_UTR	24848547	24848559	.	-	.	Parent=Os02t0623500-01
Chr02	irgsp1_rep	three_prime_UTR	24848196	24848428	.	-	.	Parent=Os02t0623500-01
Chr02	irgsp1_rep	mRNA	24848195	24859531	.	-	.	ID=Os02t0623500-02;Name=Os02t0623500-02;Locus_id=Os02g0623500;Note=Similar to Lysyl-tRNA synthetase.;Transcript_evidence=AK062142 (DDBJ%2C Best hit);ORF_evidence=B9F159 (UniProt);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: lysyl-tRNA aminoacylation (GO:0006430),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: lysine-tRNA ligase activity (GO:0004824),Molecular Function: ATP binding (GO:0005524);InterPro=Lysyl-tRNA synthetase%2C class II (IPR002313),Aminoacyl-tRNA synthetase%2C class II (D/K/N) (IPR004364),Nucleic acid binding%2C OB-fold%2C tRNA/helicase-type (IPR004365),Aminoacyl-tRNA synthetase%2C class II (IPR006195),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),Lysyl-tRNA synthetase%2C class II%2C C-terminal (IPR018149),Aminoacyl-tRNA synthetase%2C class II (D/K/N)-like (IPR018150);NIAS_FLcDNA=001-045-G05;Expression=AK062142;TENOR=Os02t0623500-02;KEGG=Os02t0623500-02 (EC:6.1.1.6)
Chr02	irgsp1_rep	CDS	24859499	24859531	.	-	0	Parent=Os02t0623500-02
Chr02	irgsp1_rep	CDS	24858110	24858221	.	-	0	Parent=Os02t0623500-02
Chr02	irgsp1_rep	CDS	24857317	24857425	.	-	2	Parent=Os02t0623500-02
Chr02	irgsp1_rep	CDS	24856715	24856772	.	-	1	Parent=Os02t0623500-02
Chr02	irgsp1_rep	CDS	24856283	24856351	.	-	0	Parent=Os02t0623500-02
Chr02	irgsp1_rep	CDS	24854579	24854686	.	-	0	Parent=Os02t0623500-02
Chr02	irgsp1_rep	CDS	24854152	24854244	.	-	0	Parent=Os02t0623500-02
Chr02	irgsp1_rep	CDS	24853842	24853946	.	-	0	Parent=Os02t0623500-02
Chr02	irgsp1_rep	CDS	24851978	24852175	.	-	0	Parent=Os02t0623500-02
Chr02	irgsp1_rep	CDS	24851086	24851180	.	-	0	Parent=Os02t0623500-02
Chr02	irgsp1_rep	CDS	24849615	24849705	.	-	1	Parent=Os02t0623500-02
Chr02	irgsp1_rep	CDS	24848771	24848944	.	-	0	Parent=Os02t0623500-02
Chr02	irgsp1_rep	CDS	24848560	24848652	.	-	0	Parent=Os02t0623500-02
Chr02	irgsp1_rep	three_prime_UTR	24848547	24848559	.	-	.	Parent=Os02t0623500-02
Chr02	irgsp1_rep	three_prime_UTR	24848195	24848428	.	-	.	Parent=Os02t0623500-02
Chr02	irgsp1_rep	mRNA	24858109	24859923	.	+	.	ID=Os02t0623550-00;Name=Os02t0623550-00;Locus_id=Os02g0623550;Note=Non-protein coding transcript.;Transcript_evidence=BT086844 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0623550-00
Chr02	irgsp1_rep	exon	24858109	24858215	.	+	.	Parent=Os02t0623550-00
Chr02	irgsp1_rep	exon	24859491	24859708	.	+	.	Parent=Os02t0623550-00
Chr02	irgsp1_rep	exon	24859808	24859923	.	+	.	Parent=Os02t0623550-00
Chr02	irgsp1_rep	mRNA	24862203	24864799	.	-	.	ID=Os02t0623600-01;Name=Os02t0623600-01;Locus_id=Os02g0623600;CGSNL Gene Symbol=WAK12;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 12;Oryzabase Gene Symbol Synonym(s)=OsWAK12%2C OsRLCK75%2C RLCK75;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 75;Note=Similar to OSIGBa0145M07.8 protein.;Transcript_evidence=AK111596 (DDBJ%2C Best hit);ORF_evidence=Q01J49 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515);InterPro=EGF-type aspartate/asparagine hydroxylation site (IPR000152),Epidermal growth factor-like%2C type 3 (IPR000742),EGF-like calcium-binding (IPR001881),Epidermal growth factor-like (IPR006210),EGF-like calcium-binding%2C conserved site (IPR018097);NIAS_FLcDNA=J013093N17;Oryzabase=8000;TENOR=Os02t0623600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	24864765	24864799	.	-	.	Parent=Os02t0623600-01
Chr02	irgsp1_rep	CDS	24863867	24864764	.	-	0	Parent=Os02t0623600-01
Chr02	irgsp1_rep	CDS	24863566	24863783	.	-	2	Parent=Os02t0623600-01
Chr02	irgsp1_rep	three_prime_UTR	24862203	24863565	.	-	.	Parent=Os02t0623600-01
Chr02	irgsp1_rep	mRNA	24862813	24864741	.	+	.	ID=Os02t0623766-00;Name=Os02t0623766-00;Locus_id=Os02g0623766;Note=Hypothetical protein.;Transcript_evidence=EU955465 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0623766-00
Chr02	irgsp1_rep	five_prime_UTR	24862813	24863164	.	+	.	Parent=Os02t0623766-00
Chr02	irgsp1_rep	CDS	24863165	24863506	.	+	0	Parent=Os02t0623766-00
Chr02	irgsp1_rep	CDS	24863584	24863766	.	+	0	Parent=Os02t0623766-00
Chr02	irgsp1_rep	CDS	24863862	24864741	.	+	0	Parent=Os02t0623766-00
Chr02	irgsp1_rep	mRNA	24871746	24872333	.	-	.	ID=Os02t0623932-00;Name=Os02t0623932-00;Locus_id=Os02g0623932;Note=Similar to WAK80 - OsWAK receptor-like protein kinase.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001147058.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os02t0623932-00
Chr02	irgsp1_rep	CDS	24871746	24872333	.	-	0	Parent=Os02t0623932-00
Chr02	irgsp1_rep	mRNA	24873011	24874196	.	-	.	ID=Os02t0624100-00;Name=Os02t0624100-00;Locus_id=Os02g0624100;Note=EGF-type aspartate/asparagine hydroxylation site domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6K1S9 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515);InterPro=EGF-type aspartate/asparagine hydroxylation site (IPR000152),Epidermal growth factor-like%2C type 3 (IPR000742),EGF-like calcium-binding (IPR001881),Epidermal growth factor-like (IPR006210),EGF-like calcium-binding%2C conserved site (IPR018097);TENOR=Os02t0624100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	24873317	24874196	.	-	0	Parent=Os02t0624100-00
Chr02	irgsp1_rep	CDS	24873011	24873201	.	-	2	Parent=Os02t0624100-00
Chr02	irgsp1_rep	mRNA	24878777	24879932	.	-	.	ID=Os02t0624300-01;Name=Os02t0624300-01;Locus_id=Os02g0624300;RAP-DB Gene Symbol Synonym(s)=OsMYB30%2C OsMYB5P;RAP-DB Gene Name Synonym(s)=Myb transcription factor 4 paralog%2C OsMyb4 paralog;Oryzabase Gene Symbol Synonym(s)=OsMYB30%2C MYB30%2C OsMYB5P%2C MYB5P%2C OsMYB13a%2C MYB13a;Oryzabase Gene Name Synonym(s)=Myb transcription factor 4 paralog%2C OsMyb4 paralog;Note=R2R3-type MYB transcription factor%2C Negative regulation of cold tolerance%2C Maintenance of Pi homeostasis;Transcript_evidence=AK112056;ORF_evidence=Q6K1S6;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeobox domain-like (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930);NIAS_FLcDNA=001-110-C03;Manual Curation=March 27%2C 2018;Literature_PMID=29566032,28062835;Oryzabase=15606;Expression=AK112056;TENOR=Os02t0624300-01;KEGG=Os02t0624300-01;Subcellular location=nucleus (GO:0005634)
Chr02	irgsp1_rep	five_prime_UTR	24879811	24879932	.	-	.	Parent=Os02t0624300-01
Chr02	irgsp1_rep	CDS	24879548	24879810	.	-	0	Parent=Os02t0624300-01
Chr02	irgsp1_rep	CDS	24878916	24879429	.	-	1	Parent=Os02t0624300-01
Chr02	irgsp1_rep	three_prime_UTR	24878777	24878915	.	-	.	Parent=Os02t0624300-01
Chr02	irgsp1_rep	mRNA	24878984	24879433	.	+	.	ID=Os02t0624350-00;Name=Os02t0624350-00;Locus_id=Os02g0624350;Note=Hypothetical protein.;Transcript_evidence=EU971393 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0624350-00
Chr02	irgsp1_rep	five_prime_UTR	24878984	24878984	.	+	.	Parent=Os02t0624350-00
Chr02	irgsp1_rep	CDS	24878985	24879433	.	+	0	Parent=Os02t0624350-00
Chr02	irgsp1_rep	mRNA	24899523	24904960	.	+	.	ID=Os02t0624400-01;Name=Os02t0624400-01;Locus_id=Os02g0624400;CGSNL Gene Symbol=PGSIP-B1;CGSNL Gene Name=PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN B1;Oryzabase Gene Symbol Synonym(s)=OsPGSIP-B1;Oryzabase Gene Name Synonym(s)=plant glycogenin-like starch initiation protein B1;Note=Glycosyl transferase%2C family 8 protein.;Transcript_evidence=AK120845 (DDBJ%2C Best hit);ORF_evidence=NP_197349.2 (RefSeq);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 8 (IPR002495);NIAS_FLcDNA=J023022M20;Oryzabase=23274;Expression=AK120845;TENOR=Os02t0624400-01;KEGG=Os02t0624400-01
Chr02	irgsp1_rep	five_prime_UTR	24899523	24899669	.	+	.	Parent=Os02t0624400-01
Chr02	irgsp1_rep	CDS	24899670	24899927	.	+	0	Parent=Os02t0624400-01
Chr02	irgsp1_rep	CDS	24900867	24900987	.	+	0	Parent=Os02t0624400-01
Chr02	irgsp1_rep	CDS	24901152	24901337	.	+	2	Parent=Os02t0624400-01
Chr02	irgsp1_rep	CDS	24901634	24901782	.	+	2	Parent=Os02t0624400-01
Chr02	irgsp1_rep	CDS	24902817	24902924	.	+	0	Parent=Os02t0624400-01
Chr02	irgsp1_rep	CDS	24903008	24903145	.	+	0	Parent=Os02t0624400-01
Chr02	irgsp1_rep	CDS	24903233	24903373	.	+	0	Parent=Os02t0624400-01
Chr02	irgsp1_rep	CDS	24904081	24904360	.	+	0	Parent=Os02t0624400-01
Chr02	irgsp1_rep	CDS	24904431	24904554	.	+	2	Parent=Os02t0624400-01
Chr02	irgsp1_rep	CDS	24904704	24904842	.	+	1	Parent=Os02t0624400-01
Chr02	irgsp1_rep	three_prime_UTR	24904843	24904960	.	+	.	Parent=Os02t0624400-01
Chr02	irgsp1_rep	mRNA	24901654	24904962	.	+	.	ID=Os02t0624400-02;Name=Os02t0624400-02;Locus_id=Os02g0624400;CGSNL Gene Symbol=PGSIP-B1;CGSNL Gene Name=PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN B1;Oryzabase Gene Symbol Synonym(s)=OsPGSIP-B1;Oryzabase Gene Name Synonym(s)=plant glycogenin-like starch initiation protein B1;Note=Similar to predicted protein.;Transcript_evidence=AK058534 (DDBJ%2C Best hit);ORF_evidence=F1DGA9 (UniProt);NIAS_FLcDNA=001-017-A11;Oryzabase=23274;Expression=AK058534;TENOR=Os02t0624400-02;KEGG=Os02t0624400-02
Chr02	irgsp1_rep	CDS	24901654	24901782	.	+	0	Parent=Os02t0624400-02
Chr02	irgsp1_rep	CDS	24902817	24902924	.	+	0	Parent=Os02t0624400-02
Chr02	irgsp1_rep	CDS	24903008	24903145	.	+	0	Parent=Os02t0624400-02
Chr02	irgsp1_rep	CDS	24903233	24903373	.	+	0	Parent=Os02t0624400-02
Chr02	irgsp1_rep	CDS	24904081	24904360	.	+	0	Parent=Os02t0624400-02
Chr02	irgsp1_rep	CDS	24904431	24904554	.	+	2	Parent=Os02t0624400-02
Chr02	irgsp1_rep	CDS	24904704	24904842	.	+	1	Parent=Os02t0624400-02
Chr02	irgsp1_rep	three_prime_UTR	24904843	24904962	.	+	.	Parent=Os02t0624400-02
Chr02	irgsp1_rep	mRNA	24899667	24904589	.	-	.	ID=Os02t0624700-00;Name=Os02t0624700-00;Locus_id=Os02g0624700;Note=Hypothetical protein.;Transcript_evidence=tplb0044f05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0624700-00
Chr02	irgsp1_rep	five_prime_UTR	24904447	24904589	.	-	.	Parent=Os02t0624700-00
Chr02	irgsp1_rep	five_prime_UTR	24904085	24904378	.	-	.	Parent=Os02t0624700-00
Chr02	irgsp1_rep	five_prime_UTR	24903226	24903383	.	-	.	Parent=Os02t0624700-00
Chr02	irgsp1_rep	five_prime_UTR	24902987	24903138	.	-	.	Parent=Os02t0624700-00
Chr02	irgsp1_rep	five_prime_UTR	24902740	24902907	.	-	.	Parent=Os02t0624700-00
Chr02	irgsp1_rep	five_prime_UTR	24901629	24902095	.	-	.	Parent=Os02t0624700-00
Chr02	irgsp1_rep	five_prime_UTR	24901174	24901332	.	-	.	Parent=Os02t0624700-00
Chr02	irgsp1_rep	five_prime_UTR	24900891	24901010	.	-	.	Parent=Os02t0624700-00
Chr02	irgsp1_rep	CDS	24900873	24900890	.	-	0	Parent=Os02t0624700-00
Chr02	irgsp1_rep	CDS	24899667	24899936	.	-	0	Parent=Os02t0624700-00
Chr02	irgsp1_rep	mRNA	24915862	24922083	.	+	.	ID=Os02t0625000-01;Name=Os02t0625000-01;Locus_id=Os02g0625000;RAP-DB Gene Symbol Synonym(s)=OsCRY2%2C CRY2;RAP-DB Gene Name Synonym(s)=cryptoChrome 2;Oryzabase Gene Symbol Synonym(s)=OsCRY2%2C CRY2;Oryzabase Gene Name Synonym(s)=cryptoChrome 2;Note=CryptoChrome 2%2C blue light photoreceptor%2C Promotion of flowering time;Transcript_evidence=AK065669,AK099334,AB103094;ORF_evidence=Q852P4;GO=Biological Process: blue light signaling pathway (GO:0009785),Molecular Function: blue light photoreceptor activity (GO:0009882);InterPro=CryptoChrome/DNA photolyase class 1 (IPR002081),CryptoChrome%2C plant (IPR014134),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),DNA photolyase%2C N-terminal (IPR006050),CryptoChrome/DNA photolyase%2C FAD-binding domain (IPR005101),CryptoChrome/DNA photolyase class 1%2C conserved site%2C C-terminal (IPR018394);NIAS_FLcDNA=J013042O16, J033020H02;Manual Curation=September 12%2C 2016;Literature_PMID=16760221;Oryzabase=11127;TENOR=Os02t0625000-01
Chr02	irgsp1_rep	five_prime_UTR	24915862	24916086	.	+	.	Parent=Os02t0625000-01
Chr02	irgsp1_rep	five_prime_UTR	24916212	24916423	.	+	.	Parent=Os02t0625000-01
Chr02	irgsp1_rep	CDS	24916424	24916736	.	+	0	Parent=Os02t0625000-01
Chr02	irgsp1_rep	CDS	24917894	24918115	.	+	2	Parent=Os02t0625000-01
Chr02	irgsp1_rep	CDS	24918383	24919098	.	+	2	Parent=Os02t0625000-01
Chr02	irgsp1_rep	CDS	24920340	24920981	.	+	0	Parent=Os02t0625000-01
Chr02	irgsp1_rep	CDS	24921794	24921856	.	+	0	Parent=Os02t0625000-01
Chr02	irgsp1_rep	three_prime_UTR	24921857	24922083	.	+	.	Parent=Os02t0625000-01
Chr02	irgsp1_rep	mRNA	24915877	24921576	.	+	.	ID=Os02t0625000-02;Name=Os02t0625000-02;Locus_id=Os02g0625000;Oryzabase Gene Symbol Synonym(s)=OsCRY2%2C CRY2;Oryzabase Gene Name Synonym(s)=cryptoChrome 2;Note=Similar to CryptoChrome 2.;Transcript_evidence=AK068394 (DDBJ%2C Best hit);ORF_evidence=Q852P4 (UniProt);GO=Biological Process: DNA repair (GO:0006281),Molecular Function: DNA photolyase activity (GO:0003913);InterPro=DNA photolyase%2C FAD-binding/CryptoChrome%2C C-terminal (IPR005101),DNA photolyase%2C N-terminal (IPR006050),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J013149M17;Oryzabase=11127;TENOR=Os02t0625000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	24915877	24916086	.	+	.	Parent=Os02t0625000-02
Chr02	irgsp1_rep	five_prime_UTR	24916212	24916423	.	+	.	Parent=Os02t0625000-02
Chr02	irgsp1_rep	CDS	24916424	24916736	.	+	0	Parent=Os02t0625000-02
Chr02	irgsp1_rep	CDS	24917894	24918115	.	+	2	Parent=Os02t0625000-02
Chr02	irgsp1_rep	CDS	24918383	24918740	.	+	2	Parent=Os02t0625000-02
Chr02	irgsp1_rep	CDS	24918818	24918821	.	+	1	Parent=Os02t0625000-02
Chr02	irgsp1_rep	three_prime_UTR	24918822	24919098	.	+	.	Parent=Os02t0625000-02
Chr02	irgsp1_rep	three_prime_UTR	24920340	24920981	.	+	.	Parent=Os02t0625000-02
Chr02	irgsp1_rep	three_prime_UTR	24921212	24921576	.	+	.	Parent=Os02t0625000-02
Chr02	irgsp1_rep	mRNA	24923862	24925468	.	+	.	ID=Os02t0625100-00;Name=Os02t0625100-00;Locus_id=Os02g0625100;Note=Hypothetical conserved gene.;Transcript_evidence=AK367292 (DDBJ);ORF_evidence=NP_001047477.2 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os02t0625100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	24923862	24923867	.	+	.	Parent=Os02t0625100-00
Chr02	irgsp1_rep	CDS	24923868	24925349	.	+	0	Parent=Os02t0625100-00
Chr02	irgsp1_rep	three_prime_UTR	24925350	24925468	.	+	.	Parent=Os02t0625100-00
Chr02	irgsp1_rep	mRNA	24934934	24936452	.	+	.	ID=Os02t0625300-00;Name=Os02t0625300-00;Locus_id=Os02g0625300;CGSNL Gene Symbol=PPCK2;CGSNL Gene Name=PHOSPHOENOL PYRUVATE CARBOXYLASE KINASE2;Oryzabase Gene Symbol Synonym(s)=OsPPCK2%2C OsPPCK2L%2C OsPPCK2S;Oryzabase Gene Name Synonym(s)=phosphoenol pyruvate carboxylase kinase2%2C phosphoenolpyruvate carboxylase kinase 2;Note=Similar to PEPC kinase.;Transcript_evidence=AB233453 (DDBJ%2C Best hit);ORF_evidence=Q2ABR7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);Oryzabase=6268;TENOR=Os02t0625300-00;KEGG=Os02t0625300-00
Chr02	irgsp1_rep	five_prime_UTR	24934934	24934978	.	+	.	Parent=Os02t0625300-00
Chr02	irgsp1_rep	CDS	24934979	24935840	.	+	0	Parent=Os02t0625300-00
Chr02	irgsp1_rep	CDS	24935958	24936013	.	+	2	Parent=Os02t0625300-00
Chr02	irgsp1_rep	three_prime_UTR	24936014	24936452	.	+	.	Parent=Os02t0625300-00
Chr02	irgsp1_rep	mRNA	24940849	24946648	.	-	.	ID=Os02t0625500-01;Name=Os02t0625500-01;Locus_id=Os02g0625500;Note=Similar to Adenosine kinase-like protein (Fragment).;Transcript_evidence=AK101791 (DDBJ%2C Best hit),AK059771 (DDBJ%2C Best hit);ORF_evidence=Q84P58 (UniProt);GO=Biological Process: purine ribonucleoside salvage (GO:0006166),Molecular Function: adenosine kinase activity (GO:0004001),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Adenosine kinase (IPR001805),Carbohydrate/puine kinase%2C PfkB%2C conserved site (IPR002173),Carbohydrate/purine kinase (IPR011611);NIAS_FLcDNA=J033065J11,006-203-H06;TENOR=Os02t0625500-01
Chr02	irgsp1_rep	five_prime_UTR	24946647	24946648	.	-	.	Parent=Os02t0625500-01
Chr02	irgsp1_rep	CDS	24946459	24946646	.	-	0	Parent=Os02t0625500-01
Chr02	irgsp1_rep	CDS	24945770	24945823	.	-	1	Parent=Os02t0625500-01
Chr02	irgsp1_rep	CDS	24945573	24945619	.	-	1	Parent=Os02t0625500-01
Chr02	irgsp1_rep	CDS	24945452	24945483	.	-	2	Parent=Os02t0625500-01
Chr02	irgsp1_rep	CDS	24945261	24945362	.	-	0	Parent=Os02t0625500-01
Chr02	irgsp1_rep	CDS	24945075	24945142	.	-	0	Parent=Os02t0625500-01
Chr02	irgsp1_rep	CDS	24943786	24943862	.	-	1	Parent=Os02t0625500-01
Chr02	irgsp1_rep	CDS	24943157	24943254	.	-	2	Parent=Os02t0625500-01
Chr02	irgsp1_rep	CDS	24943017	24943087	.	-	0	Parent=Os02t0625500-01
Chr02	irgsp1_rep	CDS	24942703	24942769	.	-	1	Parent=Os02t0625500-01
Chr02	irgsp1_rep	CDS	24942502	24942624	.	-	0	Parent=Os02t0625500-01
Chr02	irgsp1_rep	CDS	24941639	24941699	.	-	0	Parent=Os02t0625500-01
Chr02	irgsp1_rep	CDS	24941049	24941191	.	-	2	Parent=Os02t0625500-01
Chr02	irgsp1_rep	three_prime_UTR	24940849	24941048	.	-	.	Parent=Os02t0625500-01
Chr02	irgsp1_rep	mRNA	24940870	24946494	.	-	.	ID=Os02t0625500-02;Name=Os02t0625500-02;Locus_id=Os02g0625500;Note=Similar to Adenosine kinase-like protein (Fragment).;Transcript_evidence=AK059188 (DDBJ%2C Best hit);ORF_evidence=Q84P58 (UniProt);GO=Biological Process: purine ribonucleoside salvage (GO:0006166),Molecular Function: adenosine kinase activity (GO:0004001),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Adenosine kinase (IPR001805),Carbohydrate/puine kinase%2C PfkB%2C conserved site (IPR002173),Carbohydrate/purine kinase (IPR011611);NIAS_FLcDNA=001-023-G12;TENOR=Os02t0625500-02
Chr02	irgsp1_rep	five_prime_UTR	24946494	24946494	.	-	.	Parent=Os02t0625500-02
Chr02	irgsp1_rep	CDS	24946459	24946493	.	-	0	Parent=Os02t0625500-02
Chr02	irgsp1_rep	CDS	24945770	24945823	.	-	1	Parent=Os02t0625500-02
Chr02	irgsp1_rep	CDS	24945573	24945619	.	-	1	Parent=Os02t0625500-02
Chr02	irgsp1_rep	CDS	24945452	24945483	.	-	2	Parent=Os02t0625500-02
Chr02	irgsp1_rep	CDS	24945261	24945362	.	-	0	Parent=Os02t0625500-02
Chr02	irgsp1_rep	CDS	24945075	24945142	.	-	0	Parent=Os02t0625500-02
Chr02	irgsp1_rep	CDS	24943786	24943862	.	-	1	Parent=Os02t0625500-02
Chr02	irgsp1_rep	CDS	24943157	24943254	.	-	2	Parent=Os02t0625500-02
Chr02	irgsp1_rep	CDS	24943017	24943087	.	-	0	Parent=Os02t0625500-02
Chr02	irgsp1_rep	CDS	24942703	24942769	.	-	1	Parent=Os02t0625500-02
Chr02	irgsp1_rep	CDS	24942502	24942624	.	-	0	Parent=Os02t0625500-02
Chr02	irgsp1_rep	CDS	24941639	24941699	.	-	0	Parent=Os02t0625500-02
Chr02	irgsp1_rep	CDS	24941049	24941191	.	-	2	Parent=Os02t0625500-02
Chr02	irgsp1_rep	three_prime_UTR	24940870	24941048	.	-	.	Parent=Os02t0625500-02
Chr02	irgsp1_rep	mRNA	24953147	24960082	.	+	.	ID=Os02t0625900-01;Name=Os02t0625900-01;Locus_id=Os02g0625900;Note=Conserved hypothetical protein.;Transcript_evidence=AK242744 (DDBJ%2C Best hit);ORF_evidence=Q6K1R1 (UniProt);NIAS_FLcDNA=J090049O18;TENOR=Os02t0625900-01;KEGG=Os02t0625900-01
Chr02	irgsp1_rep	five_prime_UTR	24953147	24953396	.	+	.	Parent=Os02t0625900-01
Chr02	irgsp1_rep	five_prime_UTR	24956547	24956804	.	+	.	Parent=Os02t0625900-01
Chr02	irgsp1_rep	CDS	24956805	24958001	.	+	0	Parent=Os02t0625900-01
Chr02	irgsp1_rep	CDS	24958128	24958643	.	+	0	Parent=Os02t0625900-01
Chr02	irgsp1_rep	CDS	24958757	24958949	.	+	0	Parent=Os02t0625900-01
Chr02	irgsp1_rep	CDS	24959615	24959946	.	+	2	Parent=Os02t0625900-01
Chr02	irgsp1_rep	three_prime_UTR	24959947	24960082	.	+	.	Parent=Os02t0625900-01
Chr02	irgsp1_rep	mRNA	24973450	24977287	.	-	.	ID=Os02t0626100-01;Name=Os02t0626100-01;Locus_id=Os02g0626100;CGSNL Gene Symbol=PAL1;CGSNL Gene Name=PHENYLALANINE AMMONIA-LYASE 1;Oryzabase Gene Symbol Synonym(s)=OsPAL%2C Pal1*%2C Pal1%2C PAL%2C Pal_1%2C PalI%2C PAL2%2C OsPAL01%2C PAL01%2C OSPAL%2C CP-1%2C GP-1%2C OsPAL1%2C PAL3%2C OsPAL3;Oryzabase Gene Name Synonym(s)=phenylalanine ammonia-lyase%2C phenylalanine ammonia lyase 1%2C Phe ammonia lyase 1;Note=Similar to Phenylalanine ammonia-lyase.;Transcript_evidence=AK102817 (DDBJ%2C Best hit);ORF_evidence=P14717 (UniProt);GO=Biological Process: L-phenylalanine catabolic process (GO:0006559),Biological Process: biosynthetic process (GO:0009058),Cellular Component: cytoplasm (GO:0005737),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ammonia-lyase activity (GO:0016841);InterPro=Phenylalanine/histidine ammonia-lyase (IPR001106),Phenylalanine ammonia-lyase (IPR005922),L-Aspartase-like (IPR008948),Phenylalanine/histidine ammonia-lyases%2C active site (IPR022313),Phenylalanine ammonia-lyase%2C shielding domain (IPR023144),L-Aspartase-like%2C N-terminal (IPR024083);NIAS_FLcDNA=J033108N04;Oryzabase=6252;Expression=AK102817;TENOR=Os02t0626100-01;KEGG=Os02t0626100-01 (EC:4.3.1.24)
Chr02	irgsp1_rep	five_prime_UTR	24977203	24977287	.	-	.	Parent=Os02t0626100-01
Chr02	irgsp1_rep	CDS	24976838	24977202	.	-	0	Parent=Os02t0626100-01
Chr02	irgsp1_rep	CDS	24973760	24975500	.	-	1	Parent=Os02t0626100-01
Chr02	irgsp1_rep	three_prime_UTR	24973450	24973759	.	-	.	Parent=Os02t0626100-01
Chr02	irgsp1_rep	mRNA	24973450	24974875	.	-	.	ID=Os02t0626100-02;Name=Os02t0626100-02;Locus_id=Os02g0626100;CGSNL Gene Symbol=PAL1;CGSNL Gene Name=PHENYLALANINE AMMONIA-LYASE 1;Oryzabase Gene Symbol Synonym(s)=OsPAL%2C Pal1*%2C Pal1%2C PAL%2C Pal_1%2C PalI%2C PAL2%2C OsPAL01%2C PAL01%2C OSPAL%2C CP-1%2C GP-1%2C OsPAL1%2C PAL3%2C OsPAL3;Oryzabase Gene Name Synonym(s)=phenylalanine ammonia-lyase%2C phenylalanine ammonia lyase 1%2C Phe ammonia lyase 1;Note=Similar to Phenylalanine ammonia-lyase.;Transcript_evidence=AK067923 (DDBJ%2C Best hit);ORF_evidence=P14717 (UniProt);GO=Biological Process: L-phenylalanine catabolic process (GO:0006559),Biological Process: biosynthetic process (GO:0009058),Cellular Component: cytoplasm (GO:0005737),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ammonia-lyase activity (GO:0016841);InterPro=Phenylalanine/histidine ammonia-lyase (IPR001106),Phenylalanine ammonia-lyase (IPR005922),L-Aspartase-like (IPR008948),Phenylalanine ammonia-lyase%2C shielding domain (IPR023144);NIAS_FLcDNA=J013126B03;Oryzabase=6252;Expression=AK067923;TENOR=Os02t0626100-02;KEGG=Os02t0626100-02 (EC:4.3.1.24)
Chr02	irgsp1_rep	CDS	24973760	24974875	.	-	0	Parent=Os02t0626100-02
Chr02	irgsp1_rep	three_prime_UTR	24973450	24973759	.	-	.	Parent=Os02t0626100-02
Chr02	irgsp1_rep	mRNA	24973448	24974745	.	-	.	ID=Os02t0626100-03;Name=Os02t0626100-03;Locus_id=Os02g0626100;CGSNL Gene Symbol=PAL1;CGSNL Gene Name=PHENYLALANINE AMMONIA-LYASE 1;Oryzabase Gene Symbol Synonym(s)=OsPAL%2C Pal1*%2C Pal1%2C PAL%2C Pal_1%2C PalI%2C PAL2%2C OsPAL01%2C PAL01%2C OSPAL%2C CP-1%2C GP-1%2C OsPAL1%2C PAL3%2C OsPAL3;Oryzabase Gene Name Synonym(s)=phenylalanine ammonia-lyase%2C phenylalanine ammonia lyase 1%2C Phe ammonia lyase 1;Note=Similar to Phenylalanine ammonia-lyase.;Transcript_evidence=AK058306 (DDBJ%2C Best hit);ORF_evidence=P14717 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ammonia-lyase activity (GO:0016841);InterPro=Phenylalanine/histidine ammonia-lyase (IPR001106),L-Aspartase-like (IPR008948),Phenylalanine ammonia-lyase%2C shielding domain (IPR023144);NIAS_FLcDNA=001-013-H03;Oryzabase=6252;TENOR=Os02t0626100-03
Chr02	irgsp1_rep	five_prime_UTR	24974744	24974745	.	-	.	Parent=Os02t0626100-03
Chr02	irgsp1_rep	CDS	24973760	24974743	.	-	0	Parent=Os02t0626100-03
Chr02	irgsp1_rep	three_prime_UTR	24973448	24973759	.	-	.	Parent=Os02t0626100-03
Chr02	irgsp1_rep	mRNA	24973448	24973663	.	-	.	ID=Os02t0626100-04;Name=Os02t0626100-04;Locus_id=Os02g0626100;CGSNL Gene Symbol=PAL1;CGSNL Gene Name=PHENYLALANINE AMMONIA-LYASE 1;Oryzabase Gene Symbol Synonym(s)=OsPAL%2C Pal1*%2C Pal1%2C PAL%2C Pal_1%2C PalI%2C PAL2%2C OsPAL01%2C PAL01%2C OSPAL%2C CP-1%2C GP-1%2C OsPAL1%2C PAL3%2C OsPAL3;Oryzabase Gene Name Synonym(s)=phenylalanine ammonia-lyase%2C phenylalanine ammonia lyase 1%2C Phe ammonia lyase 1;Note=Non-protein coding transcript.;Transcript_evidence=AK060724 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-031-G08;Oryzabase=6252;TENOR=Os02t0626100-04
Chr02	irgsp1_rep	exon	24973448	24973663	.	-	.	Parent=Os02t0626100-04
Chr02	irgsp1_rep	mRNA	24976369	24976837	.	-	.	ID=Os02t0626200-01;Name=Os02t0626200-01;Locus_id=Os02g0626200;Note=Non-protein coding transcript.;Transcript_evidence=AK121303 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023111B15;TENOR=Os02t0626200-01
Chr02	irgsp1_rep	exon	24976369	24976837	.	-	.	Parent=Os02t0626200-01
Chr02	irgsp1_rep	mRNA	24985294	24989388	.	-	.	ID=Os02t0626400-01;Name=Os02t0626400-01;Locus_id=Os02g0626400;CGSNL Gene Symbol=PAL;CGSNL Gene Name=PHENYLALANINE AMMONIA-LYASE;Oryzabase Gene Symbol Synonym(s)=OsPAL%2C OsPAL08%2C PAL2%2C GP-28%2C GP28%2C PAL08%2C OsPAL2%2C OsPAL8%2C PAL8;Oryzabase Gene Name Synonym(s)=phenylalanine ammonia-lyase%2C phenylalanine ammonia-lyase 2;Note=Phenylalanine ammonia-lyase (EC 4.3.1.5).;Transcript_evidence=AK120127 (DDBJ%2C Best hit);ORF_evidence=C5XXT9 (UniProt);GO=Biological Process: L-phenylalanine catabolic process (GO:0006559),Biological Process: biosynthetic process (GO:0009058),Cellular Component: cytoplasm (GO:0005737),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ammonia-lyase activity (GO:0016841);InterPro=Phenylalanine/histidine ammonia-lyase (IPR001106),Phenylalanine ammonia-lyase (IPR005922),L-Aspartase-like (IPR008948),Phenylalanine/histidine ammonia-lyases%2C active site (IPR022313),Phenylalanine ammonia-lyase%2C shielding domain (IPR023144),L-Aspartase-like%2C N-terminal (IPR024083);NIAS_FLcDNA=J013026F02;Oryzabase=12547;TENOR=Os02t0626400-01;KEGG=Os02t0626400-01 (EC:4.3.1.24%2C EC:4.3.1.5)
Chr02	irgsp1_rep	five_prime_UTR	24989241	24989388	.	-	.	Parent=Os02t0626400-01
Chr02	irgsp1_rep	CDS	24988831	24989240	.	-	0	Parent=Os02t0626400-01
Chr02	irgsp1_rep	CDS	24985582	24987328	.	-	1	Parent=Os02t0626400-01
Chr02	irgsp1_rep	three_prime_UTR	24985294	24985581	.	-	.	Parent=Os02t0626400-01
Chr02	irgsp1_rep	mRNA	24985294	24987125	.	-	.	ID=Os02t0626400-02;Name=Os02t0626400-02;Locus_id=Os02g0626400;CGSNL Gene Symbol=PAL;CGSNL Gene Name=PHENYLALANINE AMMONIA-LYASE;Oryzabase Gene Symbol Synonym(s)=OsPAL%2C OsPAL08%2C PAL2%2C GP-28%2C GP28%2C PAL08%2C OsPAL2%2C OsPAL8%2C PAL8;Oryzabase Gene Name Synonym(s)=phenylalanine ammonia-lyase%2C phenylalanine ammonia-lyase 2;Note=Similar to Phenylalanine ammonia-lyase.;Transcript_evidence=AK065208 (DDBJ%2C Best hit);ORF_evidence=B8AFQ7 (UniProt);GO=Biological Process: L-phenylalanine catabolic process (GO:0006559),Biological Process: biosynthetic process (GO:0009058),Cellular Component: cytoplasm (GO:0005737),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ammonia-lyase activity (GO:0016841);InterPro=Phenylalanine/histidine ammonia-lyase (IPR001106),Phenylalanine ammonia-lyase (IPR005922),L-Aspartase-like (IPR008948),Phenylalanine ammonia-lyase%2C shielding domain (IPR023144),L-Aspartase-like%2C N-terminal (IPR024083);NIAS_FLcDNA=J013002F15;Oryzabase=12547;TENOR=Os02t0626400-02;KEGG=Os02t0626400-02 (EC:4.3.1.24)
Chr02	irgsp1_rep	five_prime_UTR	24987124	24987125	.	-	.	Parent=Os02t0626400-02
Chr02	irgsp1_rep	CDS	24985582	24987123	.	-	0	Parent=Os02t0626400-02
Chr02	irgsp1_rep	three_prime_UTR	24985294	24985581	.	-	.	Parent=Os02t0626400-02
Chr02	irgsp1_rep	mRNA	24985256	24986844	.	-	.	ID=Os02t0626400-03;Name=Os02t0626400-03;Locus_id=Os02g0626400;CGSNL Gene Symbol=PAL;CGSNL Gene Name=PHENYLALANINE AMMONIA-LYASE;Oryzabase Gene Symbol Synonym(s)=OsPAL%2C OsPAL08%2C PAL2%2C GP-28%2C GP28%2C PAL08%2C OsPAL2%2C OsPAL8%2C PAL8;Oryzabase Gene Name Synonym(s)=phenylalanine ammonia-lyase%2C phenylalanine ammonia-lyase 2;Note=Similar to Phenylalanine ammonia-lyase.;Transcript_evidence=AK061959 (DDBJ%2C Best hit);ORF_evidence=B8AFQ7 (UniProt);GO=Biological Process: L-phenylalanine catabolic process (GO:0006559),Biological Process: biosynthetic process (GO:0009058),Cellular Component: cytoplasm (GO:0005737),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ammonia-lyase activity (GO:0016841);InterPro=Phenylalanine/histidine ammonia-lyase (IPR001106),Phenylalanine ammonia-lyase (IPR005922),L-Aspartase-like (IPR008948),Phenylalanine ammonia-lyase%2C shielding domain (IPR023144);NIAS_FLcDNA=001-042-G01;Oryzabase=12547;TENOR=Os02t0626400-03;KEGG=Os02t0626400-03 (EC:4.3.1.24)
Chr02	irgsp1_rep	CDS	24985582	24986844	.	-	0	Parent=Os02t0626400-03
Chr02	irgsp1_rep	three_prime_UTR	24985256	24985581	.	-	.	Parent=Os02t0626400-03
Chr02	irgsp1_rep	mRNA	24992882	24995414	.	+	.	ID=Os02t0626532-01;Name=Os02t0626532-01;Locus_id=Os02g0626532;Note=Hypothetical gene.;Transcript_evidence=AK318616 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100089G15;TENOR=Os02t0626532-01;KEGG=Os02t0626532-01
Chr02	irgsp1_rep	five_prime_UTR	24992882	24994092	.	+	.	Parent=Os02t0626532-01
Chr02	irgsp1_rep	CDS	24994093	24994767	.	+	0	Parent=Os02t0626532-01
Chr02	irgsp1_rep	three_prime_UTR	24994768	24995414	.	+	.	Parent=Os02t0626532-01
Chr02	irgsp1_rep	mRNA	24993130	24995329	.	-	.	ID=Os02t0626600-00;Name=Os02t0626600-00;Locus_id=Os02g0626600;Oryzabase Gene Symbol Synonym(s)=OsPAL05%2C PAL05%2C OsPAL3%2C PAL5%2C PAL3%2C OsPAL2%3B3%2C PAL2%3B3;Oryzabase Gene Name Synonym(s)=Phenylalanine ammonia-lyase 05;Note=Similar to Phenylalanine ammonia-lyase.;Transcript_evidence=AK353809 (DDBJ);ORF_evidence=A2X7F5 (UniProt);GO=Biological Process: L-phenylalanine catabolic process (GO:0006559),Biological Process: biosynthetic process (GO:0009058),Cellular Component: cytoplasm (GO:0005737),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ammonia-lyase activity (GO:0016841);InterPro=Phenylalanine/histidine ammonia-lyase (IPR001106),Phenylalanine ammonia-lyase (IPR005922),L-Aspartase-like (IPR008948),Phenylalanine/histidine ammonia-lyases%2C active site (IPR022313),Phenylalanine ammonia-lyase%2C shielding domain (IPR023144),L-Aspartase-like%2C N-terminal (IPR024083);Oryzabase=15680;TENOR=Os02t0626600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	24995126	24995329	.	-	0	Parent=Os02t0626600-00
Chr02	irgsp1_rep	CDS	24993130	24995073	.	-	0	Parent=Os02t0626600-00
Chr02	irgsp1_rep	mRNA	25006495	25009018	.	-	.	ID=Os02t0627100-01;Name=Os02t0627100-01;Locus_id=Os02g0627100;RAP-DB Gene Symbol Synonym(s)=OsPAL4;CGSNL Gene Symbol=PAL1;CGSNL Gene Name=PHENYLALANINE AMMONIA-LYASE 1;Oryzabase Gene Symbol Synonym(s)=OsPAL1%2C PAL%2C OsPAL06%2C ZB8%2C pal/zb8%2C PAL06%2C rPAL-P5%2C ZB8PAL%2C OsPAL%2C OsPAL2%2C OsPAL4%2C PAL4%2C PAL/ZB8%2C OsPAL6%2C PAL6;Oryzabase Gene Name Synonym(s)=phenylalanine ammonia-lyase 1%2C phenylalanine ammonia lyase;Note=Phenylalanine ammonia-lyase%2C Broad spectrum disease resistance;Transcript_evidence=AK068993;ORF_evidence=Q0DZE0;GO=Biological Process: L-phenylalanine catabolic process (GO:0006559),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ammonia-lyase activity (GO:0016841),Cellular Component: cytoplasm (GO:0005737);InterPro=Fumarase/histidase%2C N-terminal (IPR024083),L-Aspartase-like (IPR008948),Phenylalanine ammonia-lyase%2C shielding domain superfamily (IPR023144),Aromatic amino acid lyase (IPR001106),Phenylalanine ammonia-lyase (IPR005922),Phenylalanine/histidine ammonia-lyases%2C active site (IPR022313);NIAS_FLcDNA=J023001A06;Manual Curation=July 20%2C 2020;Literature_PMID=25515696;Oryzabase=10463;Expression=AK068993;TENOR=Os02t0627100-01;KEGG=Os02t0627100-01 (EC:4.3.1.24%2C EC:4.3.1.5)
Chr02	irgsp1_rep	five_prime_UTR	25008986	25009018	.	-	.	Parent=Os02t0627100-01
Chr02	irgsp1_rep	CDS	25008591	25008985	.	-	0	Parent=Os02t0627100-01
Chr02	irgsp1_rep	CDS	25006725	25008471	.	-	1	Parent=Os02t0627100-01
Chr02	irgsp1_rep	three_prime_UTR	25006495	25006724	.	-	.	Parent=Os02t0627100-01
Chr02	irgsp1_rep	mRNA	25052171	25054971	.	+	.	ID=Os02t0627700-00;Name=Os02t0627700-00;Locus_id=Os02g0627700;CGSNL Gene Symbol=CNGC3;CGSNL Gene Name=CYCLIC NUCLEOTIDE GATED CHANNEL 3;Oryzabase Gene Symbol Synonym(s)=OsCNGC3%2C OsCNGC7;Oryzabase Gene Name Synonym(s)=Cyclic nucleotide gated channel 3%2C Cyclic nucleotide-gated ion channel 7;Note=Similar to ATCNGC15.;Transcript_evidence=ab initio prediction;ORF_evidence=XP_002880939.1 (RefSeq);GO=Biological Process: ion transport (GO:0006811),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: ion channel activity (GO:0005216);InterPro=Cyclic nucleotide-binding domain (IPR000595),Ion transport (IPR005821),RmlC-like jelly roll fold (IPR014710),Cyclic nucleotide-binding-like (IPR018490);Oryzabase=15476;TENOR=Os02t0627700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	25052171	25052199	.	+	0	Parent=Os02t0627700-00
Chr02	irgsp1_rep	CDS	25052441	25053020	.	+	1	Parent=Os02t0627700-00
Chr02	irgsp1_rep	CDS	25053112	25053324	.	+	0	Parent=Os02t0627700-00
Chr02	irgsp1_rep	CDS	25053425	25053561	.	+	0	Parent=Os02t0627700-00
Chr02	irgsp1_rep	CDS	25053808	25053919	.	+	1	Parent=Os02t0627700-00
Chr02	irgsp1_rep	CDS	25054046	25054270	.	+	0	Parent=Os02t0627700-00
Chr02	irgsp1_rep	CDS	25054360	25054971	.	+	0	Parent=Os02t0627700-00
Chr02	irgsp1_rep	mRNA	25052437	25054965	.	-	.	ID=Os02t0627750-00;Name=Os02t0627750-00;Locus_id=Os02g0627750;Note=Hypothetical protein.;Transcript_evidence=tplb0024o19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0627750-00
Chr02	irgsp1_rep	five_prime_UTR	25054740	25054965	.	-	.	Parent=Os02t0627750-00
Chr02	irgsp1_rep	CDS	25054342	25054739	.	-	0	Parent=Os02t0627750-00
Chr02	irgsp1_rep	CDS	25054040	25054252	.	-	1	Parent=Os02t0627750-00
Chr02	irgsp1_rep	CDS	25053903	25053927	.	-	1	Parent=Os02t0627750-00
Chr02	irgsp1_rep	three_prime_UTR	25053806	25053902	.	-	.	Parent=Os02t0627750-00
Chr02	irgsp1_rep	three_prime_UTR	25053438	25053709	.	-	.	Parent=Os02t0627750-00
Chr02	irgsp1_rep	three_prime_UTR	25053108	25053334	.	-	.	Parent=Os02t0627750-00
Chr02	irgsp1_rep	three_prime_UTR	25052437	25053016	.	-	.	Parent=Os02t0627750-00
Chr02	irgsp1_rep	mRNA	25072518	25076274	.	-	.	ID=Os02t0627800-00;Name=Os02t0627800-00;Locus_id=Os02g0627800;Note=Similar to Isoform 2 of Cyclin-B1-3.;Transcript_evidence=ab initio prediction;ORF_evidence=Q0JNK6-2 (UniProt);GO=Biological Process: regulation of cyclin-dependent protein kinase activity (GO:0000079),Biological Process: regulation of cell cycle (GO:0051726),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763),Cyclin A/B/D/E (IPR014400);TENOR=Os02t0627800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	25076199	25076274	.	-	0	Parent=Os02t0627800-00
Chr02	irgsp1_rep	CDS	25075480	25075802	.	-	2	Parent=Os02t0627800-00
Chr02	irgsp1_rep	CDS	25075264	25075389	.	-	0	Parent=Os02t0627800-00
Chr02	irgsp1_rep	CDS	25074926	25075177	.	-	0	Parent=Os02t0627800-00
Chr02	irgsp1_rep	CDS	25074590	25074748	.	-	0	Parent=Os02t0627800-00
Chr02	irgsp1_rep	CDS	25074361	25074492	.	-	0	Parent=Os02t0627800-00
Chr02	irgsp1_rep	CDS	25072518	25072640	.	-	0	Parent=Os02t0627800-00
Chr02	irgsp1_rep	mRNA	25103334	25105616	.	-	.	ID=Os02t0627900-00;Name=Os02t0627900-00;Locus_id=Os02g0627900;Note=Similar to cDNA clone:J013002N02%2C full insert sequence.;Transcript_evidence=ab initio prediction;ORF_evidence=B7EAQ6 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os02t0627900-00;KEGG=Os02t0627900-00
Chr02	irgsp1_rep	CDS	25105366	25105616	.	-	0	Parent=Os02t0627900-00
Chr02	irgsp1_rep	CDS	25104069	25105286	.	-	1	Parent=Os02t0627900-00
Chr02	irgsp1_rep	CDS	25103334	25103535	.	-	1	Parent=Os02t0627900-00
Chr02	irgsp1_rep	mRNA	25109674	25112684	.	+	.	ID=Os02t0628000-00;Name=Os02t0628000-00;Locus_id=Os02g0628000;CGSNL Gene Symbol=LOGL2;CGSNL Gene Name=LONELY GUY LIKE PHOSPHORIBOHYDROLASE 2;Oryzabase Gene Symbol Synonym(s)=LOGL2;Oryzabase Gene Name Synonym(s)=LOG LIKE phosphoribohydrolase 2%2C LOG LIKE 2;Note=Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL2.;Transcript_evidence=B9F166 (UniProt);ORF_evidence=B9F166 (UniProt);InterPro=Cytokinin riboside 5&apos%3B-monophosphate phosphoribohydrolase LOG (IPR005269);Oryzabase=9847;TENOR=Os02t0628000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	25109674	25109817	.	+	0	Parent=Os02t0628000-00
Chr02	irgsp1_rep	CDS	25110203	25110300	.	+	0	Parent=Os02t0628000-00
Chr02	irgsp1_rep	CDS	25110476	25110506	.	+	1	Parent=Os02t0628000-00
Chr02	irgsp1_rep	CDS	25111227	25111326	.	+	0	Parent=Os02t0628000-00
Chr02	irgsp1_rep	CDS	25111713	25111783	.	+	2	Parent=Os02t0628000-00
Chr02	irgsp1_rep	CDS	25111875	25112018	.	+	0	Parent=Os02t0628000-00
Chr02	irgsp1_rep	CDS	25112538	25112684	.	+	0	Parent=Os02t0628000-00
Chr02	irgsp1_rep	mRNA	25112870	25113452	.	-	.	ID=Os02t0628100-01;Name=Os02t0628100-01;Locus_id=Os02g0628100;Oryzabase Gene Name Synonym(s)=Hypothetical gene;Note=Hypothetical gene.;Transcript_evidence=AK105228 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-111-E02;Oryzabase=22026;Expression=AK105228;TENOR=Os02t0628100-01;KEGG=Os02t0628100-01
Chr02	irgsp1_rep	five_prime_UTR	25113451	25113452	.	-	.	Parent=Os02t0628100-01
Chr02	irgsp1_rep	CDS	25112998	25113450	.	-	0	Parent=Os02t0628100-01
Chr02	irgsp1_rep	three_prime_UTR	25112870	25112997	.	-	.	Parent=Os02t0628100-01
Chr02	irgsp1_rep	mRNA	25110322	25113435	.	-	.	ID=Os02t0628100-03;Name=Os02t0628100-03;Locus_id=Os02g0628100;Oryzabase Gene Name Synonym(s)=Hypothetical gene;Note=Hypothetical gene.;Transcript_evidence=AK073708 (DDBJ%2C Best hit),AK073319 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033059A17,J033024M14;Oryzabase=22026;Expression=AK073708;TENOR=Os02t0628100-03;KEGG=Os02t0628100-03
Chr02	irgsp1_rep	CDS	25112998	25113435	.	-	0	Parent=Os02t0628100-03
Chr02	irgsp1_rep	three_prime_UTR	25112192	25112997	.	-	.	Parent=Os02t0628100-03
Chr02	irgsp1_rep	three_prime_UTR	25111113	25111341	.	-	.	Parent=Os02t0628100-03
Chr02	irgsp1_rep	three_prime_UTR	25110322	25111035	.	-	.	Parent=Os02t0628100-03
Chr02	irgsp1_rep	mRNA	25119080	25122933	.	+	.	ID=Os02t0628200-01;Name=Os02t0628200-01;Locus_id=Os02g0628200;Note=Protein of unknown function DUF250 domain containing protein.;Transcript_evidence=AK070820 (DDBJ%2C Best hit);ORF_evidence=B6UA14 (UniProt);InterPro=Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=J023066G14;Expression=AK070820;TENOR=Os02t0628200-01;KEGG=Os02t0628200-01
Chr02	irgsp1_rep	five_prime_UTR	25119080	25119237	.	+	.	Parent=Os02t0628200-01
Chr02	irgsp1_rep	five_prime_UTR	25120178	25120215	.	+	.	Parent=Os02t0628200-01
Chr02	irgsp1_rep	CDS	25120216	25120330	.	+	0	Parent=Os02t0628200-01
Chr02	irgsp1_rep	CDS	25120520	25120704	.	+	2	Parent=Os02t0628200-01
Chr02	irgsp1_rep	CDS	25120775	25120842	.	+	0	Parent=Os02t0628200-01
Chr02	irgsp1_rep	CDS	25121236	25121368	.	+	1	Parent=Os02t0628200-01
Chr02	irgsp1_rep	CDS	25121526	25121687	.	+	0	Parent=Os02t0628200-01
Chr02	irgsp1_rep	CDS	25122128	25122400	.	+	0	Parent=Os02t0628200-01
Chr02	irgsp1_rep	CDS	25122497	25122586	.	+	0	Parent=Os02t0628200-01
Chr02	irgsp1_rep	three_prime_UTR	25122587	25122933	.	+	.	Parent=Os02t0628200-01
Chr02	irgsp1_rep	mRNA	25120269	25122704	.	+	.	ID=Os02t0628200-02;Name=Os02t0628200-02;Locus_id=Os02g0628200;Note=Similar to Integral membrane protein like.;Transcript_evidence=AK059676 (DDBJ%2C Best hit);ORF_evidence=B6UA14 (UniProt);InterPro=Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=001-031-G11;Expression=AK059676;TENOR=Os02t0628200-02;KEGG=Os02t0628200-02
Chr02	irgsp1_rep	five_prime_UTR	25120269	25120269	.	+	.	Parent=Os02t0628200-02
Chr02	irgsp1_rep	CDS	25120270	25120330	.	+	0	Parent=Os02t0628200-02
Chr02	irgsp1_rep	CDS	25120520	25120704	.	+	2	Parent=Os02t0628200-02
Chr02	irgsp1_rep	CDS	25120775	25120842	.	+	0	Parent=Os02t0628200-02
Chr02	irgsp1_rep	CDS	25121236	25121368	.	+	1	Parent=Os02t0628200-02
Chr02	irgsp1_rep	CDS	25121526	25121687	.	+	0	Parent=Os02t0628200-02
Chr02	irgsp1_rep	CDS	25122128	25122400	.	+	0	Parent=Os02t0628200-02
Chr02	irgsp1_rep	CDS	25122497	25122586	.	+	0	Parent=Os02t0628200-02
Chr02	irgsp1_rep	three_prime_UTR	25122587	25122704	.	+	.	Parent=Os02t0628200-02
Chr02	irgsp1_rep	mRNA	25133526	25136096	.	+	.	ID=Os02t0628600-01;Name=Os02t0628600-01;Locus_id=Os02g0628600;CGSNL Gene Symbol=ARF8;CGSNL Gene Name=AUXIN RESPONSE FACTOR 8;Oryzabase Gene Symbol Synonym(s)=OsARF8;Oryzabase Gene Name Synonym(s)=auxin response factor-8%2C auxin response factor 8;Note=Similar to Auxin response factor 8.;Transcript_evidence=AK243230 (DDBJ%2C Best hit);ORF_evidence=Q6K223 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: response to hormone stimulus (GO:0009725),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Transcriptional factor B3 (IPR003340),Auxin response factor (IPR010525),Aux/IAA-ARF-dimerisation (IPR011525),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=J100044L04;Oryzabase=10007;TENOR=Os02t0628600-01;KEGG=Os02t0628600-01
Chr02	irgsp1_rep	five_prime_UTR	25133526	25133596	.	+	.	Parent=Os02t0628600-01
Chr02	irgsp1_rep	CDS	25133597	25134658	.	+	0	Parent=Os02t0628600-01
Chr02	irgsp1_rep	CDS	25134739	25135652	.	+	0	Parent=Os02t0628600-01
Chr02	irgsp1_rep	CDS	25135802	25135871	.	+	1	Parent=Os02t0628600-01
Chr02	irgsp1_rep	three_prime_UTR	25135872	25136096	.	+	.	Parent=Os02t0628600-01
Chr02	irgsp1_rep	mRNA	25146685	25147276	.	-	.	ID=Os02t0628800-01;Name=Os02t0628800-01;Locus_id=Os02g0628800;Note=Similar to Ubiquitin-like protein 5 (Fragment).;Transcript_evidence=AK058725 (DDBJ%2C Best hit);ORF_evidence=A6N040 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin (IPR000626),Ubiquitin supergroup (IPR019955);NIAS_FLcDNA=001-019-F03;TENOR=Os02t0628800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	25147275	25147276	.	-	.	Parent=Os02t0628800-01
Chr02	irgsp1_rep	CDS	25146945	25147274	.	-	0	Parent=Os02t0628800-01
Chr02	irgsp1_rep	three_prime_UTR	25146685	25146944	.	-	.	Parent=Os02t0628800-01
Chr02	irgsp1_rep	mRNA	25148836	25151156	.	+	.	ID=Os02t0628900-01;Name=Os02t0628900-01;Locus_id=Os02g0628900;Note=Conserved hypothetical protein.;Transcript_evidence=AK105574 (DDBJ%2C Best hit);ORF_evidence=A2X7G5 (UniProt);NIAS_FLcDNA=001-128-D05;TENOR=Os02t0628900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	25148836	25150498	.	+	.	Parent=Os02t0628900-01
Chr02	irgsp1_rep	five_prime_UTR	25150621	25150893	.	+	.	Parent=Os02t0628900-01
Chr02	irgsp1_rep	CDS	25150894	25151106	.	+	0	Parent=Os02t0628900-01
Chr02	irgsp1_rep	three_prime_UTR	25151107	25151156	.	+	.	Parent=Os02t0628900-01
Chr02	irgsp1_rep	mRNA	25153298	25154265	.	-	.	ID=Os02t0629000-01;Name=Os02t0629000-01;Locus_id=Os02g0629000;Note=Protein of unknown function DUF584 family protein.;Transcript_evidence=AK062480 (DDBJ%2C Best hit);ORF_evidence=A2X7G6 (UniProt);InterPro=Protein of unknown function DUF584 (IPR007608);NIAS_FLcDNA=001-103-G03;Expression=AK062480;TENOR=Os02t0629000-01;KEGG=Os02t0629000-01
Chr02	irgsp1_rep	five_prime_UTR	25154126	25154265	.	-	.	Parent=Os02t0629000-01
Chr02	irgsp1_rep	CDS	25153613	25154125	.	-	0	Parent=Os02t0629000-01
Chr02	irgsp1_rep	three_prime_UTR	25153298	25153612	.	-	.	Parent=Os02t0629000-01
Chr02	irgsp1_rep	mRNA	25155024	25155468	.	-	.	ID=Os02t0629101-00;Name=Os02t0629101-00;Locus_id=Os02g0629101;Note=Conserved hypothetical protein.;Transcript_evidence=CU405928 (DDBJ%2C Best hit);ORF_evidence=Q6K218 (UniProt);TENOR=Os02t0629101-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	25155432	25155468	.	-	.	Parent=Os02t0629101-00
Chr02	irgsp1_rep	CDS	25155078	25155431	.	-	0	Parent=Os02t0629101-00
Chr02	irgsp1_rep	three_prime_UTR	25155024	25155077	.	-	.	Parent=Os02t0629101-00
Chr02	irgsp1_rep	mRNA	25162876	25166544	.	+	.	ID=Os02t0629200-01;Name=Os02t0629200-01;Locus_id=Os02g0629200;CGSNL Gene Symbol=PIP2%3B2;CGSNL Gene Name=PLASMA MEMBRANE INTRINSIC PROTEIN 2%3B2;Oryzabase Gene Symbol Synonym(s)=OsPIP2%3B2%2C PIP2-2%2C OsPIP2-3;Oryzabase Gene Name Synonym(s)=Probable aquaporin PIP2-2%2C Plasma membrane intrinsic protein 2-2;Note=Similar to cDNA clone:001-039-E03%2C full insert sequence.;Transcript_evidence=AK120386 (DDBJ%2C Best hit);ORF_evidence=B7E6W2 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Aquaporin-like (IPR023271);NIAS_FLcDNA=J013073J03;Oryzabase=8512;Expression=AK120386;TENOR=Os02t0629200-01;KEGG=Os02t0629200-01
Chr02	irgsp1_rep	five_prime_UTR	25162876	25162946	.	+	.	Parent=Os02t0629200-01
Chr02	irgsp1_rep	CDS	25162947	25163137	.	+	0	Parent=Os02t0629200-01
Chr02	irgsp1_rep	CDS	25166192	25166222	.	+	1	Parent=Os02t0629200-01
Chr02	irgsp1_rep	three_prime_UTR	25166223	25166544	.	+	.	Parent=Os02t0629200-01
Chr02	irgsp1_rep	mRNA	25162880	25166502	.	+	.	ID=Os02t0629200-02;Name=Os02t0629200-02;Locus_id=Os02g0629200;CGSNL Gene Symbol=PIP2%3B2;CGSNL Gene Name=PLASMA MEMBRANE INTRINSIC PROTEIN 2%3B2;Oryzabase Gene Symbol Synonym(s)=OsPIP2%3B2%2C PIP2-2%2C OsPIP2-3;Oryzabase Gene Name Synonym(s)=Probable aquaporin PIP2-2%2C Plasma membrane intrinsic protein 2-2;Note=Similar to HvPIP2%3B1 protein.;Transcript_evidence=AK061782 (DDBJ%2C Best hit);ORF_evidence=Q4LDW9 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: water transport (GO:0006833),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Aquaporin (IPR012269),Major intrinsic protein%2C conserved site (IPR022357),Aquaporin-like (IPR023271);NIAS_FLcDNA=001-039-E03;Oryzabase=8512;Expression=AK061782;TENOR=Os02t0629200-02;KEGG=Os02t0629200-02
Chr02	irgsp1_rep	five_prime_UTR	25162880	25162946	.	+	.	Parent=Os02t0629200-02
Chr02	irgsp1_rep	CDS	25162947	25163265	.	+	0	Parent=Os02t0629200-02
Chr02	irgsp1_rep	CDS	25163372	25163667	.	+	2	Parent=Os02t0629200-02
Chr02	irgsp1_rep	CDS	25165409	25165549	.	+	0	Parent=Os02t0629200-02
Chr02	irgsp1_rep	CDS	25166112	25166222	.	+	0	Parent=Os02t0629200-02
Chr02	irgsp1_rep	three_prime_UTR	25166223	25166502	.	+	.	Parent=Os02t0629200-02
Chr02	irgsp1_rep	mRNA	25162998	25166195	.	-	.	ID=Os02t0629266-00;Name=Os02t0629266-00;Locus_id=Os02g0629266;Note=Hypothetical protein.;Transcript_evidence=FP096444 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0629266-00
Chr02	irgsp1_rep	five_prime_UTR	25166108	25166195	.	-	.	Parent=Os02t0629266-00
Chr02	irgsp1_rep	five_prime_UTR	25165454	25165545	.	-	.	Parent=Os02t0629266-00
Chr02	irgsp1_rep	CDS	25165408	25165453	.	-	0	Parent=Os02t0629266-00
Chr02	irgsp1_rep	CDS	25163369	25163666	.	-	2	Parent=Os02t0629266-00
Chr02	irgsp1_rep	CDS	25163262	25163262	.	-	1	Parent=Os02t0629266-00
Chr02	irgsp1_rep	three_prime_UTR	25162998	25163261	.	-	.	Parent=Os02t0629266-00
Chr02	irgsp1_rep	mRNA	25175352	25181032	.	+	.	ID=Os02t0629332-00;Name=Os02t0629332-00;Locus_id=Os02g0629332;Note=Conserved hypothetical protein.;Transcript_evidence=FP092820 (DDBJ);ORF_evidence=A2X7G9 (UniProt);TENOR=Os02t0629332-00
Chr02	irgsp1_rep	five_prime_UTR	25175352	25175414	.	+	.	Parent=Os02t0629332-00
Chr02	irgsp1_rep	CDS	25175415	25175573	.	+	0	Parent=Os02t0629332-00
Chr02	irgsp1_rep	CDS	25180687	25180962	.	+	0	Parent=Os02t0629332-00
Chr02	irgsp1_rep	three_prime_UTR	25180963	25181032	.	+	.	Parent=Os02t0629332-00
Chr02	irgsp1_rep	mRNA	25176174	25179701	.	-	.	ID=Os02t0629400-01;Name=Os02t0629400-01;Locus_id=Os02g0629400;RAP-DB Gene Symbol Synonym(s)=OsPSKR1;RAP-DB Gene Name Synonym(s)=phytosulfokine receptor 1;CGSNL Gene Symbol=PSKR1;CGSNL Gene Name=PHYTOSULFOKINE RECEPTOR 1;Oryzabase Gene Symbol Synonym(s)=OsPSKR1;Oryzabase Gene Name Synonym(s)=phytosulfokine receptor 1;Note=Phytosulfokine (PSK) receptor%2C Regulation of resistance to Xoc;Transcript_evidence=AK068495;ORF_evidence=Q0DZD2;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=Leucine-rich repeat domain superfamily (IPR032675),Protein kinase-like domain superfamily (IPR011009),Leucine-rich repeat-containing N-terminal%2C plant-type (IPR013210),Protein kinase domain (IPR000719),Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J013157D09;Manual Curation=February 19%2C 2020;Literature_PMID=31388828;Oryzabase=19676;Expression=AK068495;TENOR=Os02t0629400-01;KEGG=Os02t0629400-01 (EC:2.7.1.37);Subcellular location=plasma membrane (GO:0005886)
Chr02	irgsp1_rep	five_prime_UTR	25179493	25179701	.	-	.	Parent=Os02t0629400-01
Chr02	irgsp1_rep	CDS	25176334	25179492	.	-	0	Parent=Os02t0629400-01
Chr02	irgsp1_rep	three_prime_UTR	25176174	25176333	.	-	.	Parent=Os02t0629400-01
Chr02	irgsp1_rep	mRNA	25187649	25188549	.	-	.	ID=Os02t0629600-00;Name=Os02t0629600-00;Locus_id=Os02g0629600;Note=Conserved hypothetical protein.;Transcript_evidence=AK107979 (DDBJ%2C Secondary hit);ORF_evidence=Q6YXT9 (UniProt);TENOR=Os02t0629600-00
Chr02	irgsp1_rep	five_prime_UTR	25188216	25188549	.	-	.	Parent=Os02t0629600-00
Chr02	irgsp1_rep	CDS	25187796	25188215	.	-	0	Parent=Os02t0629600-00
Chr02	irgsp1_rep	three_prime_UTR	25187649	25187795	.	-	.	Parent=Os02t0629600-00
Chr02	irgsp1_rep	mRNA	25190487	25191188	.	+	.	ID=Os02t0629800-01;Name=Os02t0629800-01;Locus_id=Os02g0629800;RAP-DB Gene Symbol Synonym(s)=CAL1%2C OsDEF7;RAP-DB Gene Name Synonym(s)=cadmium accumulation in leaf 1%2C Cd Accumulation in Leaf 1%2C defensin 7;CGSNL Gene Symbol=CAL1;CGSNL Gene Name=CADMIUM ACCUMULATION IN LEAF 1;Oryzabase Gene Symbol Synonym(s)=OsCPT1%2C CPT1%2C DEFL7%2C OsDEFL7%2C OsDf-07%2C Df-07%2C OsPR12%2C PR12%2C DEF7%2C OsDEF7%2C OsAFP1%2C AFP1;Oryzabase Gene Name Synonym(s)=Cp-thionin 1%2C defensing-like 7%2C Pathogenesis related gene 12%2C cadmium accumulation in leaf 1%2C Cd accumulation in leaf 1;Note=Defensin-like protein%2C Antimicrobial peptide%2C Positive regulation of Cd accumulation in rice leaves%2C Mediation of Cd efflux from cytosol into extracellular spaces via chelation%2C Pathogen defense;Transcript_evidence=AK121915;ORF_evidence=Q6K209;GO=Biological Process: defense response (GO:0006952);InterPro=Knottin%2C scorpion toxin-like superfamily (IPR036574),Defensin%2C plant (IPR008176),Knottin%2C scorpion toxin-like (IPR003614);NIAS_FLcDNA=J033106C08;Manual Curation=April 15%2C 2020;Literature_PMID=29440679,29414311;Oryzabase=11427;Expression=AK121915;TENOR=Os02t0629800-01;KEGG=Os02t0629800-01;Subcellular location=cell wall (GO:0005618), nucleus (GO:0005634), cytoplasm (GO:0005737)
Chr02	irgsp1_rep	five_prime_UTR	25190487	25190573	.	+	.	Parent=Os02t0629800-01
Chr02	irgsp1_rep	CDS	25190574	25190637	.	+	0	Parent=Os02t0629800-01
Chr02	irgsp1_rep	CDS	25190738	25190916	.	+	2	Parent=Os02t0629800-01
Chr02	irgsp1_rep	three_prime_UTR	25190917	25191188	.	+	.	Parent=Os02t0629800-01
Chr02	irgsp1_rep	mRNA	25191799	25193194	.	-	.	ID=Os02t0629900-01;Name=Os02t0629900-01;Locus_id=Os02g0629900;Note=Hypothetical protein.;Transcript_evidence=AK108563 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-145-C07;Expression=AK108563;TENOR=Os02t0629900-01;KEGG=Os02t0629900-01
Chr02	irgsp1_rep	five_prime_UTR	25192668	25193194	.	-	.	Parent=Os02t0629900-01
Chr02	irgsp1_rep	CDS	25192320	25192667	.	-	0	Parent=Os02t0629900-01
Chr02	irgsp1_rep	three_prime_UTR	25191799	25192319	.	-	.	Parent=Os02t0629900-01
Chr02	irgsp1_rep	mRNA	25192002	25193315	.	+	.	ID=Os02t0630000-01;Name=Os02t0630000-01;Locus_id=Os02g0630000;Oryzabase Gene Symbol Synonym(s)=OsFbox102%2C Os_F0177;Oryzabase Gene Name Synonym(s)=F-box protein 102;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK108631 (DDBJ%2C Best hit);ORF_evidence=A2X7H1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-147-F04;Oryzabase=16895;TENOR=Os02t0630000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	25192002	25192003	.	+	.	Parent=Os02t0630000-01
Chr02	irgsp1_rep	CDS	25192004	25193218	.	+	0	Parent=Os02t0630000-01
Chr02	irgsp1_rep	three_prime_UTR	25193219	25193315	.	+	.	Parent=Os02t0630000-01
Chr02	irgsp1_rep	mRNA	25194429	25196895	.	-	.	ID=Os02t0630100-00;Name=Os02t0630100-00;Locus_id=Os02g0630100;Note=ABC-2 type transporter domain containing protein.;Transcript_evidence=AK359487 (DDBJ);ORF_evidence=Q6K206 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=ABC-2 type transporter (IPR013525);TENOR=Os02t0630100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	25196224	25196895	.	-	0	Parent=Os02t0630100-00
Chr02	irgsp1_rep	CDS	25194429	25194743	.	-	0	Parent=Os02t0630100-00
Chr02	irgsp1_rep	mRNA	25197094	25197717	.	-	.	ID=Os02t0630250-00;Name=Os02t0630250-00;Locus_id=Os02g0630250;Note=Similar to predicted protein.;Transcript_evidence=BT064868 (DDBJ);ORF_evidence=B9F175 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: ribonuclease H activity (GO:0004523);InterPro=Ribonuclease H domain (IPR002156),Ribonuclease H-like (IPR012337);TENOR=Os02t0630250-00;KEGG=Os02t0630250-00
Chr02	irgsp1_rep	CDS	25197094	25197717	.	-	0	Parent=Os02t0630250-00
Chr02	irgsp1_rep	mRNA	25200605	25203742	.	-	.	ID=Os02t0630300-01;Name=Os02t0630300-01;Locus_id=Os02g0630300;CGSNL Gene Symbol=GA2OX9;CGSNL Gene Name=GIBBERELLIN 2-OXIDASE 9;Oryzabase Gene Symbol Synonym(s)=OsGA2ox9%2C GA2ox7%2C 2-ODD35%2C Os2-ODD35%2C 2ODD35%2C Os2ODD35;Oryzabase Gene Name Synonym(s)=GA 2-oxidase 9%2C 2-oxoglutarate-dependent dioxygenase 35;Note=2OG-Fe(II) oxygenase domain containing protein.;Transcript_evidence=AK108598 (DDBJ%2C Best hit);ORF_evidence=Q01IA8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=002-146-E04;Oryzabase=9085;Expression=AK108598;TENOR=Os02t0630300-01;KEGG=Os02t0630300-01
Chr02	irgsp1_rep	five_prime_UTR	25203643	25203742	.	-	.	Parent=Os02t0630300-01
Chr02	irgsp1_rep	CDS	25203125	25203642	.	-	0	Parent=Os02t0630300-01
Chr02	irgsp1_rep	CDS	25201265	25201646	.	-	1	Parent=Os02t0630300-01
Chr02	irgsp1_rep	three_prime_UTR	25200605	25201264	.	-	.	Parent=Os02t0630300-01
Chr02	irgsp1_rep	mRNA	25199505	25202158	.	-	.	ID=Os02t0630300-02;Name=Os02t0630300-02;Locus_id=Os02g0630300;CGSNL Gene Symbol=GA2OX9;CGSNL Gene Name=GIBBERELLIN 2-OXIDASE 9;Oryzabase Gene Symbol Synonym(s)=OsGA2ox9%2C GA2ox7%2C 2-ODD35%2C Os2-ODD35%2C 2ODD35%2C Os2ODD35;Oryzabase Gene Name Synonym(s)=GA 2-oxidase 9%2C 2-oxoglutarate-dependent dioxygenase 35;Note=Similar to cDNA clone:002-146-E04%2C full insert sequence.;Transcript_evidence=AK072410 (DDBJ%2C Best hit);ORF_evidence=B7F1G2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=J023083A20;Oryzabase=9085;TENOR=Os02t0630300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	25201679	25202158	.	-	.	Parent=Os02t0630300-02
Chr02	irgsp1_rep	CDS	25201265	25201678	.	-	0	Parent=Os02t0630300-02
Chr02	irgsp1_rep	three_prime_UTR	25199505	25201264	.	-	.	Parent=Os02t0630300-02
Chr02	irgsp1_rep	mRNA	25199769	25203644	.	+	.	ID=Os02t0630475-00;Name=Os02t0630475-00;Locus_id=Os02g0630475;Note=Hypothetical protein.;Transcript_evidence=tplb0055j06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0630475-00
Chr02	irgsp1_rep	five_prime_UTR	25199769	25199981	.	+	.	Parent=Os02t0630475-00
Chr02	irgsp1_rep	five_prime_UTR	25201303	25201637	.	+	.	Parent=Os02t0630475-00
Chr02	irgsp1_rep	five_prime_UTR	25203114	25203114	.	+	.	Parent=Os02t0630475-00
Chr02	irgsp1_rep	CDS	25203115	25203644	.	+	0	Parent=Os02t0630475-00
Chr02	irgsp1_rep	mRNA	25211740	25213934	.	-	.	ID=Os02t0630650-01;Name=Os02t0630650-01;Locus_id=Os02g0630650;Note=Conserved hypothetical protein.;Transcript_evidence=AK241447 (DDBJ%2C Best hit);ORF_evidence=Q5N7S3 (UniProt);NIAS_FLcDNA=J065163F05;TENOR=Os02t0630650-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	25213808	25213934	.	-	.	Parent=Os02t0630650-01
Chr02	irgsp1_rep	CDS	25213643	25213807	.	-	0	Parent=Os02t0630650-01
Chr02	irgsp1_rep	three_prime_UTR	25211740	25213642	.	-	.	Parent=Os02t0630650-01
Chr02	irgsp1_rep	mRNA	25231647	25236419	.	+	.	ID=Os02t0631000-01;Name=Os02t0631000-01;Locus_id=Os02g0631000;Note=Similar to H0322F07.6 protein.;Transcript_evidence=AK068667 (DDBJ%2C Best hit);ORF_evidence=Q259A3 (UniProt);InterPro=Domain of unknown function DUF2296 (IPR019273);NIAS_FLcDNA=J013159L03;Expression=AK068667;TENOR=Os02t0631000-01;KEGG=Os02t0631000-01
Chr02	irgsp1_rep	five_prime_UTR	25231647	25231818	.	+	.	Parent=Os02t0631000-01
Chr02	irgsp1_rep	CDS	25231819	25232070	.	+	0	Parent=Os02t0631000-01
Chr02	irgsp1_rep	CDS	25233432	25233576	.	+	0	Parent=Os02t0631000-01
Chr02	irgsp1_rep	CDS	25234956	25235065	.	+	2	Parent=Os02t0631000-01
Chr02	irgsp1_rep	CDS	25235172	25235586	.	+	0	Parent=Os02t0631000-01
Chr02	irgsp1_rep	CDS	25235673	25235920	.	+	2	Parent=Os02t0631000-01
Chr02	irgsp1_rep	three_prime_UTR	25235921	25236419	.	+	.	Parent=Os02t0631000-01
Chr02	irgsp1_rep	mRNA	25239748	25241280	.	+	.	ID=Os02t0631100-01;Name=Os02t0631100-01;Locus_id=Os02g0631100;Note=Photosystem II oxygen evolving complex protein PsbQ family protein.;Transcript_evidence=AK105126 (DDBJ%2C Best hit);ORF_evidence=A2X7H8 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: oxygen evolving complex (GO:0009654),Cellular Component: extrinsic to membrane (GO:0019898),Molecular Function: calcium ion binding (GO:0005509);InterPro=Photosystem II PsbQ%2C oxygen evolving complex (IPR008797),PsbQ-like domain (IPR023222);NIAS_FLcDNA=001-101-E03;Expression=AK105126;TENOR=Os02t0631100-01;KEGG=Os02t0631100-01
Chr02	irgsp1_rep	five_prime_UTR	25239748	25239879	.	+	.	Parent=Os02t0631100-01
Chr02	irgsp1_rep	CDS	25239880	25240131	.	+	0	Parent=Os02t0631100-01
Chr02	irgsp1_rep	CDS	25240912	25241019	.	+	0	Parent=Os02t0631100-01
Chr02	irgsp1_rep	three_prime_UTR	25241020	25241280	.	+	.	Parent=Os02t0631100-01
Chr02	irgsp1_rep	mRNA	25242589	25256486	.	-	.	ID=Os02t0631200-01;Name=Os02t0631200-01;Locus_id=Os02g0631200;Note=Homeodomain-like containing protein.;Transcript_evidence=AK072947 (DDBJ%2C Best hit);ORF_evidence=Q01HS0 (UniProt);InterPro=Protein of unknown function DUF3755 (IPR022228);NIAS_FLcDNA=J023145J08;Expression=AK072947;TENOR=Os02t0631200-01;KEGG=Os02t0631200-01
Chr02	irgsp1_rep	five_prime_UTR	25255692	25256486	.	-	.	Parent=Os02t0631200-01
Chr02	irgsp1_rep	five_prime_UTR	25253713	25253995	.	-	.	Parent=Os02t0631200-01
Chr02	irgsp1_rep	CDS	25253411	25253712	.	-	0	Parent=Os02t0631200-01
Chr02	irgsp1_rep	CDS	25252916	25253018	.	-	1	Parent=Os02t0631200-01
Chr02	irgsp1_rep	CDS	25251715	25251783	.	-	0	Parent=Os02t0631200-01
Chr02	irgsp1_rep	CDS	25251205	25251319	.	-	0	Parent=Os02t0631200-01
Chr02	irgsp1_rep	CDS	25250407	25250495	.	-	2	Parent=Os02t0631200-01
Chr02	irgsp1_rep	CDS	25250218	25250279	.	-	0	Parent=Os02t0631200-01
Chr02	irgsp1_rep	CDS	25250039	25250135	.	-	1	Parent=Os02t0631200-01
Chr02	irgsp1_rep	CDS	25243120	25243155	.	-	0	Parent=Os02t0631200-01
Chr02	irgsp1_rep	three_prime_UTR	25242589	25243119	.	-	.	Parent=Os02t0631200-01
Chr02	irgsp1_rep	mRNA	25251009	25255916	.	-	.	ID=Os02t0631200-02;Name=Os02t0631200-02;Locus_id=Os02g0631200;Note=Similar to cDNA clone:J023088J02%2C full insert sequence.;Transcript_evidence=AK105924 (DDBJ%2C Best hit);ORF_evidence=B7EKR7 (UniProt);NIAS_FLcDNA=001-205-A07;Expression=AK105924;TENOR=Os02t0631200-02;KEGG=Os02t0631200-02
Chr02	irgsp1_rep	five_prime_UTR	25255692	25255916	.	-	.	Parent=Os02t0631200-02
Chr02	irgsp1_rep	five_prime_UTR	25253713	25253995	.	-	.	Parent=Os02t0631200-02
Chr02	irgsp1_rep	CDS	25253411	25253712	.	-	0	Parent=Os02t0631200-02
Chr02	irgsp1_rep	CDS	25252916	25253018	.	-	1	Parent=Os02t0631200-02
Chr02	irgsp1_rep	CDS	25251715	25251783	.	-	0	Parent=Os02t0631200-02
Chr02	irgsp1_rep	CDS	25251173	25251319	.	-	0	Parent=Os02t0631200-02
Chr02	irgsp1_rep	three_prime_UTR	25251009	25251172	.	-	.	Parent=Os02t0631200-02
Chr02	irgsp1_rep	mRNA	25273646	25274715	.	-	.	ID=Os02t0631500-00;Name=Os02t0631500-00;Locus_id=Os02g0631500;Note=Similar to Initiation factor eIF-4 gamma%2C middle%3B Up-frameshift suppressor 2.;Transcript_evidence=BT036598 (DDBJ);ORF_evidence=Q6H470 (UniProt);InterPro=Up-frameshift suppressor 2 (IPR007193);TENOR=Os02t0631500-00;KEGG=Os02t0631500-00
Chr02	irgsp1_rep	CDS	25273657	25274715	.	-	0	Parent=Os02t0631500-00
Chr02	irgsp1_rep	three_prime_UTR	25273646	25273656	.	-	.	Parent=Os02t0631500-00
Chr02	irgsp1_rep	mRNA	25277985	25278706	.	-	.	ID=Os02t0631601-00;Name=Os02t0631601-00;Locus_id=Os02g0631601;Note=Similar to predicted protein.;Transcript_evidence=EU942804 (DDBJ);ORF_evidence=Q2HSQ9 (UniProt);GO=Biological Process: RNA metabolic process (GO:0016070),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=MIF4G-like%2C type 3 (IPR003890),MIF4-like%2C type 1/2/3 (IPR016021),Armadillo-type fold (IPR016024);TENOR=Os02t0631601-00;KEGG=Os02t0631601-00
Chr02	irgsp1_rep	CDS	25278269	25278706	.	-	0	Parent=Os02t0631601-00
Chr02	irgsp1_rep	CDS	25277985	25278191	.	-	0	Parent=Os02t0631601-00
Chr02	irgsp1_rep	mRNA	25286967	25287842	.	-	.	ID=Os02t0631700-01;Name=Os02t0631700-01;Locus_id=Os02g0631700;RAP-DB Gene Symbol Synonym(s)=RR11%2C OsRR11%2C Rra8%2C OsRRA8;RAP-DB Gene Name Synonym(s)=A-TYPE RESPONSE REGULATOR 11%2C A-TYPE response regulator 11%2C A-type RR 8;CGSNL Gene Symbol=RR11;CGSNL Gene Name=A-TYPE RESPONSE REGULATOR 11;Oryzabase Gene Symbol Synonym(s)=OsRR11%2C Rra8%2C OsRRA8%2C RR8;Oryzabase Gene Name Synonym(s)=A-TYPE response regulator 11%2C A-type RR 8;Note=A-type response regulator%2C Cytokinin signaling;Transcript_evidence=AB249656 (Genbank),BR000318 (Genbank);ORF_evidence=Q6H468 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: two-component response regulator activity (GO:0000156);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),CheY-like superfamily (IPR011006);Manual Curation=May 11%2C 2010;Literature_PMID=16919402,17293362;Oryzabase=8156;TENOR=Os02t0631700-01
Chr02	irgsp1_rep	CDS	25287683	25287842	.	-	0	Parent=Os02t0631700-01
Chr02	irgsp1_rep	CDS	25287542	25287588	.	-	2	Parent=Os02t0631700-01
Chr02	irgsp1_rep	CDS	25287354	25287431	.	-	0	Parent=Os02t0631700-01
Chr02	irgsp1_rep	CDS	25287179	25287249	.	-	0	Parent=Os02t0631700-01
Chr02	irgsp1_rep	CDS	25286967	25287054	.	-	1	Parent=Os02t0631700-01
Chr02	irgsp1_rep	mRNA	25305319	25306175	.	-	.	ID=Os02t0631801-01;Name=Os02t0631801-01;Locus_id=Os02g0631801;Note=Hypothetical conserved gene.;Transcript_evidence=AK288635 (DDBJ%2C Best hit);ORF_evidence=Q6H466 (UniProt);NIAS_FLcDNA=J090055J05;TENOR=Os02t0631801-01;KEGG=Os02t0631801-01
Chr02	irgsp1_rep	five_prime_UTR	25306174	25306175	.	-	.	Parent=Os02t0631801-01
Chr02	irgsp1_rep	CDS	25305907	25306173	.	-	0	Parent=Os02t0631801-01
Chr02	irgsp1_rep	three_prime_UTR	25305319	25305906	.	-	.	Parent=Os02t0631801-01
Chr02	irgsp1_rep	mRNA	25320203	25321441	.	+	.	ID=Os02t0632100-01;Name=Os02t0632100-01;Locus_id=Os02g0632100;RAP-DB Gene Symbol Synonym(s)=OsWee1;RAP-DB Gene Name Synonym(s)=cell cycle-associated protein kinase OsWee1;Oryzabase Gene Symbol Synonym(s)=OsWee1%2C Wee1;Oryzabase Gene Name Synonym(s)=wall-associated receptor-like protein kinase%2C cell cycle-associated protein kinase OsWee1;Note=Cell cycle-associated protein kinase;Transcript_evidence=KX758541 (indica);ORF_evidence=A0A1Z1RF25;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),Protein kinase domain (IPR000719),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);Manual Curation=June 9%2C 2020;Literature_PMID=30733775;Oryzabase=21897;TENOR=Os02t0632100-00
Chr02	irgsp1_rep	CDS	25320203	25321441	.	+	0	Parent=Os02t0632100-01
Chr02	irgsp1_rep	mRNA	25319461	25321378	.	-	.	ID=Os02t0632150-00;Name=Os02t0632150-00;Locus_id=Os02g0632150;Note=Hypothetical protein.;Transcript_evidence=FP093119 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0632150-00
Chr02	irgsp1_rep	five_prime_UTR	25321327	25321378	.	-	.	Parent=Os02t0632150-00
Chr02	irgsp1_rep	CDS	25321087	25321326	.	-	0	Parent=Os02t0632150-00
Chr02	irgsp1_rep	three_prime_UTR	25320745	25321086	.	-	.	Parent=Os02t0632150-00
Chr02	irgsp1_rep	three_prime_UTR	25319461	25319694	.	-	.	Parent=Os02t0632150-00
Chr02	irgsp1_rep	mRNA	25329183	25341924	.	+	.	ID=Os02t0632500-01;Name=Os02t0632500-01;Locus_id=Os02g0632500;Note=Arf GTPase activating protein family protein.;Transcript_evidence=AK101701 (DDBJ%2C Best hit);ORF_evidence=XP_002886581.1 (RefSeq);GO=Biological Process: regulation of ARF GTPase activity (GO:0032312),Cellular Component: cytoplasm (GO:0005737),Molecular Function: protein binding (GO:0005515),Molecular Function: ARF GTPase activator activity (GO:0008060),Molecular Function: zinc ion binding (GO:0008270);InterPro=Arf GTPase activating protein (IPR001164),Pleckstrin homology domain (IPR001849),Ankyrin repeat (IPR002110),BAR (IPR004148),Pleckstrin homology-type (IPR011993),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J033060E24;Expression=AK101701;TENOR=Os02t0632500-01;KEGG=Os02t0632500-01
Chr02	irgsp1_rep	five_prime_UTR	25329183	25329326	.	+	.	Parent=Os02t0632500-01
Chr02	irgsp1_rep	CDS	25329327	25329374	.	+	0	Parent=Os02t0632500-01
Chr02	irgsp1_rep	CDS	25330518	25330594	.	+	0	Parent=Os02t0632500-01
Chr02	irgsp1_rep	CDS	25331066	25331166	.	+	1	Parent=Os02t0632500-01
Chr02	irgsp1_rep	CDS	25331603	25331673	.	+	2	Parent=Os02t0632500-01
Chr02	irgsp1_rep	CDS	25333818	25333880	.	+	0	Parent=Os02t0632500-01
Chr02	irgsp1_rep	CDS	25334233	25334277	.	+	0	Parent=Os02t0632500-01
Chr02	irgsp1_rep	CDS	25334387	25334452	.	+	0	Parent=Os02t0632500-01
Chr02	irgsp1_rep	CDS	25334536	25334583	.	+	0	Parent=Os02t0632500-01
Chr02	irgsp1_rep	CDS	25334670	25334763	.	+	0	Parent=Os02t0632500-01
Chr02	irgsp1_rep	CDS	25334843	25334886	.	+	2	Parent=Os02t0632500-01
Chr02	irgsp1_rep	CDS	25335006	25335221	.	+	0	Parent=Os02t0632500-01
Chr02	irgsp1_rep	CDS	25335573	25335695	.	+	0	Parent=Os02t0632500-01
Chr02	irgsp1_rep	CDS	25335859	25336071	.	+	0	Parent=Os02t0632500-01
Chr02	irgsp1_rep	CDS	25336437	25336523	.	+	0	Parent=Os02t0632500-01
Chr02	irgsp1_rep	CDS	25336766	25337014	.	+	0	Parent=Os02t0632500-01
Chr02	irgsp1_rep	CDS	25337893	25338014	.	+	0	Parent=Os02t0632500-01
Chr02	irgsp1_rep	CDS	25338642	25338732	.	+	1	Parent=Os02t0632500-01
Chr02	irgsp1_rep	CDS	25339974	25340389	.	+	0	Parent=Os02t0632500-01
Chr02	irgsp1_rep	CDS	25340996	25341100	.	+	1	Parent=Os02t0632500-01
Chr02	irgsp1_rep	CDS	25341594	25341597	.	+	1	Parent=Os02t0632500-01
Chr02	irgsp1_rep	three_prime_UTR	25341598	25341924	.	+	.	Parent=Os02t0632500-01
Chr02	irgsp1_rep	mRNA	25344413	25346245	.	+	.	ID=Os02t0632700-01;Name=Os02t0632700-01;Locus_id=Os02g0632700;Note=Conserved hypothetical protein.;Transcript_evidence=AK067220 (DDBJ%2C Best hit);ORF_evidence=Q6H544 (UniProt);NIAS_FLcDNA=J013099N04;Expression=AK067220;TENOR=Os02t0632700-01;KEGG=Os02t0632700-01
Chr02	irgsp1_rep	five_prime_UTR	25344413	25344665	.	+	.	Parent=Os02t0632700-01
Chr02	irgsp1_rep	five_prime_UTR	25345140	25345492	.	+	.	Parent=Os02t0632700-01
Chr02	irgsp1_rep	CDS	25345493	25345735	.	+	0	Parent=Os02t0632700-01
Chr02	irgsp1_rep	three_prime_UTR	25345736	25346245	.	+	.	Parent=Os02t0632700-01
Chr02	irgsp1_rep	mRNA	25348252	25351744	.	-	.	ID=Os02t0632800-01;Name=Os02t0632800-01;Locus_id=Os02g0632800;RAP-DB Gene Symbol Synonym(s)=WAK14%2C OsWAK14;RAP-DB Gene Name Synonym(s)=WALL-ASSOCIATED KINASE GENE 14;CGSNL Gene Symbol=WAK14;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 14;Oryzabase Gene Symbol Synonym(s)=OsWAK14;Oryzabase Gene Name Synonym(s)=wall-associated receptor-like protein kinase%2C wall-associated RLK%2C WAK RLK;Note=Wall-associated kinase%2C Positive regulation of rice blast resistance;Transcript_evidence=AK241637 (DDBJ%2C Best hit);ORF_evidence=Q6H459 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515);InterPro=EGF-like calcium-binding (IPR001881),Epidermal growth factor-like (IPR006210),EGF-like calcium-binding%2C conserved site (IPR018097);NIAS_FLcDNA=J065188H12;Manual Curation=January 18%2C 2016;Literature_PMID=26772971;Oryzabase=21927,6912;TENOR=Os02t0632800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	25351599	25351744	.	-	.	Parent=Os02t0632800-01
Chr02	irgsp1_rep	CDS	25350692	25351598	.	-	0	Parent=Os02t0632800-01
Chr02	irgsp1_rep	CDS	25350062	25350577	.	-	2	Parent=Os02t0632800-01
Chr02	irgsp1_rep	CDS	25349748	25349938	.	-	2	Parent=Os02t0632800-01
Chr02	irgsp1_rep	three_prime_UTR	25348252	25349747	.	-	.	Parent=Os02t0632800-01
Chr02	irgsp1_rep	mRNA	25348530	25350269	.	+	.	ID=Os02t0632850-00;Name=Os02t0632850-00;Locus_id=Os02g0632850;Note=Hypothetical protein.;Transcript_evidence=FP093119 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0632850-00
Chr02	irgsp1_rep	five_prime_UTR	25348530	25349149	.	+	.	Parent=Os02t0632850-00
Chr02	irgsp1_rep	CDS	25349150	25349163	.	+	0	Parent=Os02t0632850-00
Chr02	irgsp1_rep	CDS	25350020	25350221	.	+	1	Parent=Os02t0632850-00
Chr02	irgsp1_rep	three_prime_UTR	25350222	25350269	.	+	.	Parent=Os02t0632850-00
Chr02	irgsp1_rep	mRNA	25356937	25360011	.	-	.	ID=Os02t0632900-00;Name=Os02t0632900-00;Locus_id=Os02g0632900;CGSNL Gene Symbol=WAK15;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 15;Oryzabase Gene Symbol Synonym(s)=OsWAK15%2C OsRLCK76%2C RLCK76;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 76;Note=Conserved hypothetical protein.;Transcript_evidence=AK364899 (DDBJ);ORF_evidence=XP_002454213.1 (RefSeq);Oryzabase=6913;TENOR=Os02t0632900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	25359093	25360011	.	-	0	Parent=Os02t0632900-00
Chr02	irgsp1_rep	CDS	25358827	25358999	.	-	2	Parent=Os02t0632900-00
Chr02	irgsp1_rep	three_prime_UTR	25358482	25358826	.	-	.	Parent=Os02t0632900-00
Chr02	irgsp1_rep	three_prime_UTR	25358081	25358233	.	-	.	Parent=Os02t0632900-00
Chr02	irgsp1_rep	three_prime_UTR	25356937	25357992	.	-	.	Parent=Os02t0632900-00
Chr02	irgsp1_rep	mRNA	25361261	25365392	.	-	.	ID=Os02t0632950-00;Name=Os02t0632950-00;Locus_id=Os02g0632950;Note=Hypothetical protein.;Transcript_evidence=tplb0060j07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0632950-00
Chr02	irgsp1_rep	five_prime_UTR	25364947	25365392	.	-	.	Parent=Os02t0632950-00
Chr02	irgsp1_rep	CDS	25364548	25364946	.	-	0	Parent=Os02t0632950-00
Chr02	irgsp1_rep	CDS	25361432	25361488	.	-	0	Parent=Os02t0632950-00
Chr02	irgsp1_rep	three_prime_UTR	25361261	25361431	.	-	.	Parent=Os02t0632950-00
Chr02	irgsp1_rep	mRNA	25361374	25365608	.	+	.	ID=Os02t0633000-00;Name=Os02t0633000-00;Locus_id=Os02g0633000;Note=Lipase%2C class 3 domain containing protein.;Transcript_evidence=BT063553 (DDBJ);ORF_evidence=Q6H7K1 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921);TENOR=Os02t0633000-00
Chr02	irgsp1_rep	five_prime_UTR	25361374	25361544	.	+	.	Parent=Os02t0633000-00
Chr02	irgsp1_rep	CDS	25361545	25361555	.	+	0	Parent=Os02t0633000-00
Chr02	irgsp1_rep	CDS	25364606	25365608	.	+	1	Parent=Os02t0633000-00
Chr02	irgsp1_rep	mRNA	25374692	25377893	.	-	.	ID=Os02t0633066-00;Name=Os02t0633066-00;Locus_id=Os02g0633066;CGSNL Gene Symbol=WAK16;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 16;Oryzabase Gene Symbol Synonym(s)=OsWAK16%2C OsRLCK77%2C RLCK77;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 77;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK364899 (DDBJ);ORF_evidence=NP_001173088.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),EGF-like calcium-binding (IPR001881),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EGF-like calcium-binding%2C conserved site (IPR018097),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=6914;TENOR=Os02t0633066-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	25376990	25377893	.	-	0	Parent=Os02t0633066-00
Chr02	irgsp1_rep	CDS	25376344	25376799	.	-	2	Parent=Os02t0633066-00
Chr02	irgsp1_rep	CDS	25376027	25376179	.	-	2	Parent=Os02t0633066-00
Chr02	irgsp1_rep	CDS	25374692	25375938	.	-	2	Parent=Os02t0633066-00
Chr02	irgsp1_rep	mRNA	25388442	25394160	.	-	.	ID=Os02t0633100-01;Name=Os02t0633100-01;Locus_id=Os02g0633100;CGSNL Gene Symbol=DLN61;CGSNL Gene Name=DLN REPRESSOR 61;Oryzabase Gene Symbol Synonym(s)=OsDLN61;Oryzabase Gene Name Synonym(s)=DLN repressor 61%2C DLN motif protein 61;Note=Hypothetical conserved gene.;Transcript_evidence=AK064495 (DDBJ%2C Best hit);ORF_evidence=B8AFS4 (UniProt);InterPro=B-block binding subunit of TFIIIC (IPR007309);NIAS_FLcDNA=002-111-C11;Oryzabase=23172;TENOR=Os02t0633100-01
Chr02	irgsp1_rep	five_prime_UTR	25393870	25394160	.	-	.	Parent=Os02t0633100-01
Chr02	irgsp1_rep	CDS	25393859	25393869	.	-	0	Parent=Os02t0633100-01
Chr02	irgsp1_rep	CDS	25391439	25391847	.	-	1	Parent=Os02t0633100-01
Chr02	irgsp1_rep	CDS	25391271	25391342	.	-	0	Parent=Os02t0633100-01
Chr02	irgsp1_rep	CDS	25391111	25391173	.	-	0	Parent=Os02t0633100-01
Chr02	irgsp1_rep	CDS	25390703	25390888	.	-	0	Parent=Os02t0633100-01
Chr02	irgsp1_rep	CDS	25389484	25389868	.	-	0	Parent=Os02t0633100-01
Chr02	irgsp1_rep	CDS	25388648	25388739	.	-	2	Parent=Os02t0633100-01
Chr02	irgsp1_rep	CDS	25388442	25388493	.	-	0	Parent=Os02t0633100-01
Chr02	irgsp1_rep	mRNA	25379792	25392811	.	-	.	ID=Os02t0633100-02;Name=Os02t0633100-02;Locus_id=Os02g0633100;CGSNL Gene Symbol=DLN61;CGSNL Gene Name=DLN REPRESSOR 61;Oryzabase Gene Symbol Synonym(s)=OsDLN61;Oryzabase Gene Name Synonym(s)=DLN repressor 61%2C DLN motif protein 61;Note=B-block binding subunit of TFIIIC domain containing protein.;Transcript_evidence=AK120559 (DDBJ%2C Best hit);ORF_evidence=B8AFS4 (UniProt);InterPro=B-block binding subunit of TFIIIC (IPR007309),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=J013131N16;Oryzabase=23172;Expression=AK120559;TENOR=Os02t0633100-02;KEGG=Os02t0633100-02
Chr02	irgsp1_rep	five_prime_UTR	25392622	25392811	.	-	.	Parent=Os02t0633100-02
Chr02	irgsp1_rep	CDS	25392248	25392621	.	-	0	Parent=Os02t0633100-02
Chr02	irgsp1_rep	CDS	25391439	25391847	.	-	1	Parent=Os02t0633100-02
Chr02	irgsp1_rep	CDS	25391271	25391342	.	-	0	Parent=Os02t0633100-02
Chr02	irgsp1_rep	CDS	25391111	25391173	.	-	0	Parent=Os02t0633100-02
Chr02	irgsp1_rep	CDS	25390703	25390837	.	-	0	Parent=Os02t0633100-02
Chr02	irgsp1_rep	CDS	25389484	25389868	.	-	0	Parent=Os02t0633100-02
Chr02	irgsp1_rep	CDS	25388648	25388739	.	-	2	Parent=Os02t0633100-02
Chr02	irgsp1_rep	CDS	25387744	25388493	.	-	0	Parent=Os02t0633100-02
Chr02	irgsp1_rep	CDS	25387281	25387559	.	-	0	Parent=Os02t0633100-02
Chr02	irgsp1_rep	CDS	25386440	25386595	.	-	0	Parent=Os02t0633100-02
Chr02	irgsp1_rep	CDS	25385044	25385408	.	-	0	Parent=Os02t0633100-02
Chr02	irgsp1_rep	CDS	25384480	25384942	.	-	1	Parent=Os02t0633100-02
Chr02	irgsp1_rep	CDS	25384061	25384405	.	-	0	Parent=Os02t0633100-02
Chr02	irgsp1_rep	CDS	25382427	25383255	.	-	0	Parent=Os02t0633100-02
Chr02	irgsp1_rep	CDS	25382265	25382323	.	-	2	Parent=Os02t0633100-02
Chr02	irgsp1_rep	CDS	25381403	25381867	.	-	0	Parent=Os02t0633100-02
Chr02	irgsp1_rep	CDS	25380529	25380567	.	-	0	Parent=Os02t0633100-02
Chr02	irgsp1_rep	CDS	25379919	25380101	.	-	0	Parent=Os02t0633100-02
Chr02	irgsp1_rep	three_prime_UTR	25379792	25379918	.	-	.	Parent=Os02t0633100-02
Chr02	irgsp1_rep	mRNA	25392975	25394561	.	+	.	ID=Os02t0633200-01;Name=Os02t0633200-01;Locus_id=Os02g0633200;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK063500 (DDBJ%2C Best hit);ORF_evidence=B4G0H5 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-116-E03;Expression=AK063500;TENOR=Os02t0633200-01;KEGG=Os02t0633200-01
Chr02	irgsp1_rep	five_prime_UTR	25392975	25393006	.	+	.	Parent=Os02t0633200-01
Chr02	irgsp1_rep	CDS	25393007	25394374	.	+	0	Parent=Os02t0633200-01
Chr02	irgsp1_rep	three_prime_UTR	25394375	25394561	.	+	.	Parent=Os02t0633200-01
Chr02	irgsp1_rep	mRNA	25403237	25404058	.	+	.	ID=Os02t0633300-01;Name=Os02t0633300-01;Locus_id=Os02g0633300;CGSNL Gene Symbol=YSL14;CGSNL Gene Name=YELLOW STRIP-LIKE GENE 14;Oryzabase Gene Symbol Synonym(s)=OsYSL14%2C OsYs5;Oryzabase Gene Name Synonym(s)=rice YSL (yellow stripe-like) gene 14%2C Probable metal-nicotianamine transporter YSL14%2C Protein YELLOW STRIPE LIKE 14%2C yellow stripe 1-like transporter 14;Note=EspB-like protein.;Transcript_evidence=AK058249 (DDBJ%2C Best hit);ORF_evidence=C0PHI2 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085);InterPro=Oligopeptide transporter OPT superfamily (IPR004813);NIAS_FLcDNA=001-012-B08;Oryzabase=8355;Expression=AK058249;TENOR=Os02t0633300-01;KEGG=Os02t0633300-01
Chr02	irgsp1_rep	five_prime_UTR	25403237	25403237	.	+	.	Parent=Os02t0633300-01
Chr02	irgsp1_rep	CDS	25403238	25403945	.	+	0	Parent=Os02t0633300-01
Chr02	irgsp1_rep	three_prime_UTR	25403946	25404058	.	+	.	Parent=Os02t0633300-01
Chr02	irgsp1_rep	mRNA	25404464	25408368	.	-	.	ID=Os02t0633400-01;Name=Os02t0633400-01;Locus_id=Os02g0633400;CGSNL Gene Symbol=RPA2B;CGSNL Gene Name=REPLICATION PROTEIN A 2B;Oryzabase Gene Symbol Synonym(s)=RPA2b%2C OsRPA2b;Oryzabase Gene Name Synonym(s)=Replication Protein A2b;Note=Similar to 61 kDa protein homolog.;Transcript_evidence=AK073723 (DDBJ%2C Best hit);ORF_evidence=B8AFS5 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Nucleic acid binding%2C OB-fold%2C tRNA/helicase-type (IPR004365),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Nucleic acid-binding%2C OB-fold (IPR012340),Replication protein A%2C subunit RPA32 (IPR014646),Replication protein A%2C C-terminal (IPR014892),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=J033061H13;Oryzabase=20320;Expression=AK073723;TENOR=Os02t0633400-01;KEGG=Os02t0633400-01
Chr02	irgsp1_rep	five_prime_UTR	25408248	25408368	.	-	.	Parent=Os02t0633400-01
Chr02	irgsp1_rep	CDS	25408095	25408247	.	-	0	Parent=Os02t0633400-01
Chr02	irgsp1_rep	CDS	25407876	25407986	.	-	0	Parent=Os02t0633400-01
Chr02	irgsp1_rep	CDS	25407354	25407451	.	-	0	Parent=Os02t0633400-01
Chr02	irgsp1_rep	CDS	25407228	25407269	.	-	1	Parent=Os02t0633400-01
Chr02	irgsp1_rep	CDS	25407064	25407141	.	-	1	Parent=Os02t0633400-01
Chr02	irgsp1_rep	CDS	25406023	25406101	.	-	1	Parent=Os02t0633400-01
Chr02	irgsp1_rep	CDS	25405822	25405914	.	-	0	Parent=Os02t0633400-01
Chr02	irgsp1_rep	CDS	25405650	25405738	.	-	0	Parent=Os02t0633400-01
Chr02	irgsp1_rep	CDS	25404922	25404990	.	-	1	Parent=Os02t0633400-01
Chr02	irgsp1_rep	CDS	25404767	25404851	.	-	1	Parent=Os02t0633400-01
Chr02	irgsp1_rep	three_prime_UTR	25404464	25404766	.	-	.	Parent=Os02t0633400-01
Chr02	irgsp1_rep	mRNA	25410428	25410891	.	+	.	ID=Os02t0633600-01;Name=Os02t0633600-01;Locus_id=Os02g0633600;Note=Non-protein coding transcript.;Transcript_evidence=AK102624 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J033099I03;TENOR=Os02t0633600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	exon	25410428	25410521	.	+	.	Parent=Os02t0633600-01
Chr02	irgsp1_rep	exon	25410617	25410891	.	+	.	Parent=Os02t0633600-01
Chr02	irgsp1_rep	mRNA	25411509	25412468	.	-	.	ID=Os02t0633700-00;Name=Os02t0633700-00;Locus_id=Os02g0633700;Oryzabase Gene Symbol Synonym(s)=OsPP2C23%2C PP2C23%2C OsPP34;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C23%2C protein phosphatase 2C 23%2C protein phosphatase 34;Note=Similar to T-cell activation protein phosphatase 2C-like protein.;Transcript_evidence=BT040581 (DDBJ);ORF_evidence=NP_001151986.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932);Oryzabase=17899;TENOR=Os02t0633700-00;KEGG=Os02t0633700-00
Chr02	irgsp1_rep	CDS	25411509	25412468	.	-	0	Parent=Os02t0633700-00
Chr02	irgsp1_rep	mRNA	25414711	25415658	.	-	.	ID=Os02t0633900-00;Name=Os02t0633900-00;Locus_id=Os02g0633900;Oryzabase Gene Symbol Synonym(s)=OsPP2C24%2C PP2C24%2C OsPP35;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C24%2C protein phosphatase 2C 24%2C protein phosphatase 35;Note=Similar to T-cell activation protein phosphatase 2C-like protein.;Transcript_evidence=BT040581 (DDBJ);ORF_evidence=NP_001151986.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932);Oryzabase=17900;TENOR=Os02t0633900-00;KEGG=Os02t0633900-00
Chr02	irgsp1_rep	CDS	25414711	25415658	.	-	0	Parent=Os02t0633900-00
Chr02	irgsp1_rep	mRNA	25423693	25426575	.	-	.	ID=Os02t0634100-00;Name=Os02t0634100-00;Locus_id=Os02g0634100;Oryzabase Gene Symbol Synonym(s)=OsSTA67;Note=Similar to OSIGBa0153E02-OSIGBa0093I20.18 protein.;Transcript_evidence=AK370280 (DDBJ);ORF_evidence=Q01HQ7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);Oryzabase=19368;TENOR=Os02t0634100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	25425783	25426575	.	-	0	Parent=Os02t0634100-00
Chr02	irgsp1_rep	CDS	25423693	25424606	.	-	2	Parent=Os02t0634100-00
Chr02	irgsp1_rep	mRNA	25431343	25432503	.	+	.	ID=Os02t0634500-01;Name=Os02t0634500-01;Locus_id=Os02g0634500;Oryzabase Gene Symbol Synonym(s)=OsCLP3%2C OsClp3%2C CLP3;Oryzabase Gene Name Synonym(s)=ATP-dependent Clp protease proteolytic subunit 3%2C Clp protease 3;Note=Similar to ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp).;Transcript_evidence=AK062167 (DDBJ%2C Best hit);ORF_evidence=A3A9C6 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S14%2C ClpP (IPR001907),Peptidase S14%2C ClpP%2C active site (IPR018215),Peptidase S14/S49 (IPR023562);NIAS_FLcDNA=001-046-B10;Oryzabase=12549;Expression=AK062167;TENOR=Os02t0634500-01;KEGG=Os02t0634500-01 (EC:3.4.21.92)
Chr02	irgsp1_rep	five_prime_UTR	25431343	25431396	.	+	.	Parent=Os02t0634500-01
Chr02	irgsp1_rep	CDS	25431397	25432293	.	+	0	Parent=Os02t0634500-01
Chr02	irgsp1_rep	three_prime_UTR	25432294	25432503	.	+	.	Parent=Os02t0634500-01
Chr02	irgsp1_rep	mRNA	25435053	25438192	.	+	.	ID=Os02t0634600-01;Name=Os02t0634600-01;Locus_id=Os02g0634600;Note=Conserved hypothetical protein.;Transcript_evidence=AK101737 (DDBJ%2C Best hit);ORF_evidence=B8AFS9 (UniProt);NIAS_FLcDNA=J033061I23;Expression=AK101737;TENOR=Os02t0634600-01;KEGG=Os02t0634600-01
Chr02	irgsp1_rep	five_prime_UTR	25435053	25435205	.	+	.	Parent=Os02t0634600-01
Chr02	irgsp1_rep	CDS	25435206	25435235	.	+	0	Parent=Os02t0634600-01
Chr02	irgsp1_rep	CDS	25435664	25435776	.	+	0	Parent=Os02t0634600-01
Chr02	irgsp1_rep	CDS	25436193	25436449	.	+	1	Parent=Os02t0634600-01
Chr02	irgsp1_rep	CDS	25436987	25437804	.	+	2	Parent=Os02t0634600-01
Chr02	irgsp1_rep	three_prime_UTR	25437805	25438192	.	+	.	Parent=Os02t0634600-01
Chr02	irgsp1_rep	mRNA	25437366	25439436	.	+	.	ID=Os02t0634600-02;Name=Os02t0634600-02;Locus_id=Os02g0634600;Note=Similar to predicted protein.;Transcript_evidence=AK106596 (DDBJ%2C Best hit);ORF_evidence=B8AFS9 (UniProt);NIAS_FLcDNA=002-112-A06;Expression=AK106596;TENOR=Os02t0634600-02;KEGG=Os02t0634600-02
Chr02	irgsp1_rep	five_prime_UTR	25437366	25437366	.	+	.	Parent=Os02t0634600-02
Chr02	irgsp1_rep	CDS	25437367	25437804	.	+	0	Parent=Os02t0634600-02
Chr02	irgsp1_rep	three_prime_UTR	25437805	25439436	.	+	.	Parent=Os02t0634600-02
Chr02	irgsp1_rep	mRNA	25442875	25450093	.	+	.	ID=Os02t0634700-01;Name=Os02t0634700-01;Locus_id=Os02g0634700;CGSNL Gene Symbol=SCP8;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 8;Oryzabase Gene Symbol Synonym(s)=OsSCP8;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 8;Note=Similar to Serine carboxypeptidase II-like protein.;Transcript_evidence=AK104431 (DDBJ%2C Best hit),AK069959 (DDBJ%2C Best hit),AK104329 (DDBJ%2C Best hit),AK106111 (DDBJ%2C Best hit);ORF_evidence=NP_001152245.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=006-206-H12,J023038G19,001-031-E12,001-207-D11;Oryzabase=19192;TENOR=Os02t0634700-01
Chr02	irgsp1_rep	five_prime_UTR	25442875	25442929	.	+	.	Parent=Os02t0634700-01
Chr02	irgsp1_rep	CDS	25442930	25443215	.	+	0	Parent=Os02t0634700-01
Chr02	irgsp1_rep	CDS	25447958	25448063	.	+	2	Parent=Os02t0634700-01
Chr02	irgsp1_rep	CDS	25448189	25448286	.	+	1	Parent=Os02t0634700-01
Chr02	irgsp1_rep	CDS	25448389	25448481	.	+	2	Parent=Os02t0634700-01
Chr02	irgsp1_rep	CDS	25448574	25448662	.	+	2	Parent=Os02t0634700-01
Chr02	irgsp1_rep	CDS	25448748	25449044	.	+	0	Parent=Os02t0634700-01
Chr02	irgsp1_rep	CDS	25449136	25449272	.	+	0	Parent=Os02t0634700-01
Chr02	irgsp1_rep	CDS	25449367	25449459	.	+	1	Parent=Os02t0634700-01
Chr02	irgsp1_rep	CDS	25449568	25449673	.	+	1	Parent=Os02t0634700-01
Chr02	irgsp1_rep	CDS	25449750	25449902	.	+	0	Parent=Os02t0634700-01
Chr02	irgsp1_rep	three_prime_UTR	25449903	25450093	.	+	.	Parent=Os02t0634700-01
Chr02	irgsp1_rep	mRNA	25447360	25450074	.	+	.	ID=Os02t0634700-02;Name=Os02t0634700-02;Locus_id=Os02g0634700;CGSNL Gene Symbol=SCP8;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 8;Oryzabase Gene Symbol Synonym(s)=OsSCP8;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 8;Note=Similar to lysosomal protective protein.;Transcript_evidence=AK071869 (DDBJ%2C Best hit);ORF_evidence=NP_001152245.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=J023118K14;Oryzabase=19192;Expression=AK071869;TENOR=Os02t0634700-02;KEGG=Os02t0634700-02 (EC:3.4.16.6)
Chr02	irgsp1_rep	five_prime_UTR	25447360	25447773	.	+	.	Parent=Os02t0634700-02
Chr02	irgsp1_rep	CDS	25447774	25447819	.	+	0	Parent=Os02t0634700-02
Chr02	irgsp1_rep	CDS	25447958	25448063	.	+	2	Parent=Os02t0634700-02
Chr02	irgsp1_rep	CDS	25448189	25448286	.	+	1	Parent=Os02t0634700-02
Chr02	irgsp1_rep	CDS	25448389	25448481	.	+	2	Parent=Os02t0634700-02
Chr02	irgsp1_rep	CDS	25448574	25448662	.	+	2	Parent=Os02t0634700-02
Chr02	irgsp1_rep	CDS	25448748	25449044	.	+	0	Parent=Os02t0634700-02
Chr02	irgsp1_rep	CDS	25449136	25449272	.	+	0	Parent=Os02t0634700-02
Chr02	irgsp1_rep	CDS	25449367	25449459	.	+	1	Parent=Os02t0634700-02
Chr02	irgsp1_rep	CDS	25449568	25449673	.	+	1	Parent=Os02t0634700-02
Chr02	irgsp1_rep	CDS	25449750	25449902	.	+	0	Parent=Os02t0634700-02
Chr02	irgsp1_rep	three_prime_UTR	25449903	25450074	.	+	.	Parent=Os02t0634700-02
Chr02	irgsp1_rep	mRNA	25450313	25454074	.	-	.	ID=Os02t0634800-01;Name=Os02t0634800-01;Locus_id=Os02g0634800;CGSNL Gene Symbol=UBC;CGSNL Gene Name=UBIQUITIN CONJUGATING ENZYME E2;Oryzabase Gene Symbol Synonym(s)=UBC%2C OsUBC32%2C UBC32;Oryzabase Gene Name Synonym(s)=Ubiquitin conjugating enzyme E2%2C Ubiquitin-conjugating enzyme 32;Note=Ubiquitin-conjugating enzyme/RWD-like domain containing protein.;Transcript_evidence=AK059694 (DDBJ%2C Best hit);ORF_evidence=B6T659 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135),Ubiquitin-conjugating enzyme%2C active site (IPR023313);NIAS_FLcDNA=001-032-B10;Oryzabase=7105;Expression=AK059694;TENOR=Os02t0634800-01;KEGG=Os02t0634800-01 (EC:6.3.2.19)
Chr02	irgsp1_rep	five_prime_UTR	25453977	25454074	.	-	.	Parent=Os02t0634800-01
Chr02	irgsp1_rep	five_prime_UTR	25453280	25453320	.	-	.	Parent=Os02t0634800-01
Chr02	irgsp1_rep	CDS	25453274	25453279	.	-	0	Parent=Os02t0634800-01
Chr02	irgsp1_rep	CDS	25452448	25452567	.	-	0	Parent=Os02t0634800-01
Chr02	irgsp1_rep	CDS	25452229	25452357	.	-	0	Parent=Os02t0634800-01
Chr02	irgsp1_rep	CDS	25451795	25451924	.	-	0	Parent=Os02t0634800-01
Chr02	irgsp1_rep	CDS	25450555	25450643	.	-	2	Parent=Os02t0634800-01
Chr02	irgsp1_rep	three_prime_UTR	25450313	25450554	.	-	.	Parent=Os02t0634800-01
Chr02	irgsp1_rep	mRNA	25454258	25458461	.	+	.	ID=Os02t0634900-01;Name=Os02t0634900-01;Locus_id=Os02g0634900;Oryzabase Gene Symbol Synonym(s)=PAB2%2C OsPAB2;Oryzabase Gene Name Synonym(s)=OsTT1-like%2C TT1 paralog PAB2%2C 20S proteasome alpha2 subunit;Note=Proteasome subunit alpha type 2 (EC 3.4.25.1) (20S proteasome alpha subunit B) (20S proteasome subunit alpha-2).;Transcript_evidence=AK059769 (DDBJ%2C Best hit),AK068583 (DDBJ%2C Best hit),AK072855 (DDBJ%2C Best hit),AK106210 (DDBJ%2C Best hit);ORF_evidence=B8AFT1 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603),Cellular Component: proteasome core complex (GO:0005839),Cellular Component: proteasome core complex%2C alpha-subunit complex (GO:0019773),Molecular Function: endopeptidase activity (GO:0004175),Molecular Function: threonine-type endopeptidase activity (GO:0004298);InterPro=Proteasome%2C alpha-subunit%2C conserved site (IPR000426),Proteasome%2C subunit alpha/beta (IPR001353),Proteasome A-type subunit (IPR023332);NIAS_FLcDNA=006-203-H03,J013157B01,J023138P05,001-208-G07;Oryzabase=19890;TENOR=Os02t0634900-01
Chr02	irgsp1_rep	five_prime_UTR	25454258	25454378	.	+	.	Parent=Os02t0634900-01
Chr02	irgsp1_rep	CDS	25454379	25454419	.	+	0	Parent=Os02t0634900-01
Chr02	irgsp1_rep	CDS	25454519	25454595	.	+	1	Parent=Os02t0634900-01
Chr02	irgsp1_rep	CDS	25455515	25455579	.	+	2	Parent=Os02t0634900-01
Chr02	irgsp1_rep	CDS	25455689	25455735	.	+	0	Parent=Os02t0634900-01
Chr02	irgsp1_rep	CDS	25456429	25456504	.	+	1	Parent=Os02t0634900-01
Chr02	irgsp1_rep	CDS	25456683	25456750	.	+	0	Parent=Os02t0634900-01
Chr02	irgsp1_rep	CDS	25457369	25457438	.	+	1	Parent=Os02t0634900-01
Chr02	irgsp1_rep	CDS	25457685	25457770	.	+	0	Parent=Os02t0634900-01
Chr02	irgsp1_rep	CDS	25457925	25457987	.	+	1	Parent=Os02t0634900-01
Chr02	irgsp1_rep	CDS	25458063	25458128	.	+	1	Parent=Os02t0634900-01
Chr02	irgsp1_rep	CDS	25458247	25458295	.	+	1	Parent=Os02t0634900-01
Chr02	irgsp1_rep	three_prime_UTR	25458296	25458461	.	+	.	Parent=Os02t0634900-01
Chr02	irgsp1_rep	mRNA	25459520	25462586	.	+	.	ID=Os02t0635000-01;Name=Os02t0635000-01;Locus_id=Os02g0635000;RAP-DB Gene Symbol Synonym(s)=OsNIT2%2C OsNIT4B;RAP-DB Gene Name Synonym(s)=nitrilase 2;Oryzabase Gene Symbol Synonym(s)=OsNIT1%2C NIT1%2C OsNIT2%2C NIT2%2C OsNIT4B%2C NIT4B;Oryzabase Gene Name Synonym(s)=nitrilase 1%2C NITRILASE1;Note=Nitrilase%2C Regulation of root growth;Transcript_evidence=AK058965,AK069855;ORF_evidence=Q6H851;GO=Biological Process: nitrogen compound metabolic process (GO:0006807),Molecular Function: hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds (GO:0016810);InterPro=Carbon-nitrogen hydrolase superfamily (IPR036526),Carbon-nitrogen hydrolase (IPR003010),Nitrilase/cyanide hydratase%2C conserved site (IPR000132);NIAS_FLcDNA=001-020-C07,J023036G11;Manual Curation=February 21%2C 2020;Literature_PMID=32071150;Oryzabase=20889;Expression=AK058965;TENOR=Os02t0635000-01;KEGG=Os02t0635000-01 (EC:3.5.5.1);Subcellular location=cellular_component (GO:0005575) [whole cell]
Chr02	irgsp1_rep	five_prime_UTR	25459520	25459780	.	+	.	Parent=Os02t0635000-01
Chr02	irgsp1_rep	CDS	25459781	25459928	.	+	0	Parent=Os02t0635000-01
Chr02	irgsp1_rep	CDS	25460470	25460649	.	+	2	Parent=Os02t0635000-01
Chr02	irgsp1_rep	CDS	25461221	25461514	.	+	2	Parent=Os02t0635000-01
Chr02	irgsp1_rep	CDS	25461768	25462049	.	+	2	Parent=Os02t0635000-01
Chr02	irgsp1_rep	CDS	25462272	25462441	.	+	2	Parent=Os02t0635000-01
Chr02	irgsp1_rep	three_prime_UTR	25462442	25462586	.	+	.	Parent=Os02t0635000-01
Chr02	irgsp1_rep	mRNA	25465734	25469526	.	+	.	ID=Os02t0635200-01;Name=Os02t0635200-01;Locus_id=Os02g0635200;RAP-DB Gene Symbol Synonym(s)=OsNIT1%2C OsNIT4A;RAP-DB Gene Name Synonym(s)=nitrilase 1;Oryzabase Gene Symbol Synonym(s)=OsNIT1%2C NIT1%2C OsNIT2%2C NIT2%2C OsNIT4A%2C NIT4A;Oryzabase Gene Name Synonym(s)=nitrilase 1%2C Nitrilase 2;Note=Nitrilase%2C Regulation of root growth;Transcript_evidence=AK069985,AK104033,AK121244;ORF_evidence=Q6H849;GO=Biological Process: nitrogen compound metabolic process (GO:0006807),Molecular Function: hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds (GO:0016810);InterPro=Carbon-nitrogen hydrolase superfamily (IPR036526),Carbon-nitrogen hydrolase (IPR003010),Nitrilase/cyanide hydratase%2C conserved site (IPR000132);NIAS_FLcDNA=J023038N06,001-020-F10,J023099C01;Manual Curation=February 21%2C 2020;Literature_PMID=32071150;Oryzabase=18084;TENOR=Os02t0635200-01;Subcellular location=cellular_component (GO:0005575) [whole cell]
Chr02	irgsp1_rep	five_prime_UTR	25465734	25465855	.	+	.	Parent=Os02t0635200-01
Chr02	irgsp1_rep	CDS	25465856	25466003	.	+	0	Parent=Os02t0635200-01
Chr02	irgsp1_rep	CDS	25467021	25467212	.	+	2	Parent=Os02t0635200-01
Chr02	irgsp1_rep	CDS	25468121	25468414	.	+	2	Parent=Os02t0635200-01
Chr02	irgsp1_rep	CDS	25468647	25468928	.	+	2	Parent=Os02t0635200-01
Chr02	irgsp1_rep	CDS	25469078	25469250	.	+	2	Parent=Os02t0635200-01
Chr02	irgsp1_rep	three_prime_UTR	25469251	25469526	.	+	.	Parent=Os02t0635200-01
Chr02	irgsp1_rep	mRNA	25471563	25471958	.	+	.	ID=Os02t0635300-00;Name=Os02t0635300-00;Locus_id=Os02g0635300;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001173090.1 (RefSeq);TENOR=Os02t0635300-00;KEGG=Os02t0635300-00
Chr02	irgsp1_rep	CDS	25471563	25471958	.	+	0	Parent=Os02t0635300-00
Chr02	irgsp1_rep	mRNA	25480704	25480964	.	-	.	ID=Os02t0635400-00;Name=Os02t0635400-00;Locus_id=Os02g0635400;Note=Non-protein coding transcript.;Transcript_evidence=CT835498 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os02t0635400-00
Chr02	irgsp1_rep	exon	25480704	25480964	.	-	.	Parent=Os02t0635400-00
Chr02	irgsp1_rep	mRNA	25488084	25491732	.	+	.	ID=Os02t0635600-01;Name=Os02t0635600-01;Locus_id=Os02g0635600;Note=Tyrosine protein kinase domain containing protein.;Transcript_evidence=AK111694 (DDBJ%2C Best hit);ORF_evidence=Q2R2D9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023004O18;Expression=AK111694;TENOR=Os02t0635600-01;KEGG=Os02t0635600-01
Chr02	irgsp1_rep	five_prime_UTR	25488084	25488154	.	+	.	Parent=Os02t0635600-01
Chr02	irgsp1_rep	CDS	25488155	25490696	.	+	0	Parent=Os02t0635600-01
Chr02	irgsp1_rep	CDS	25490811	25490906	.	+	2	Parent=Os02t0635600-01
Chr02	irgsp1_rep	CDS	25491071	25491432	.	+	2	Parent=Os02t0635600-01
Chr02	irgsp1_rep	three_prime_UTR	25491433	25491732	.	+	.	Parent=Os02t0635600-01
Chr02	irgsp1_rep	mRNA	25491958	25493981	.	+	.	ID=Os02t0635700-01;Name=Os02t0635700-01;Locus_id=Os02g0635700;Note=E2F-associated phosphoprotein domain containing protein.;Transcript_evidence=AK243561 (DDBJ%2C Best hit);ORF_evidence=NP_001047520.2 (RefSeq);InterPro=E2F-associated phosphoprotein (IPR019370);NIAS_FLcDNA=J100080J08;TENOR=Os02t0635700-01;KEGG=Os02t0635700-01
Chr02	irgsp1_rep	five_prime_UTR	25491958	25492018	.	+	.	Parent=Os02t0635700-01
Chr02	irgsp1_rep	CDS	25492019	25492100	.	+	0	Parent=Os02t0635700-01
Chr02	irgsp1_rep	CDS	25492286	25492451	.	+	2	Parent=Os02t0635700-01
Chr02	irgsp1_rep	CDS	25493543	25493801	.	+	1	Parent=Os02t0635700-01
Chr02	irgsp1_rep	three_prime_UTR	25493802	25493981	.	+	.	Parent=Os02t0635700-01
Chr02	irgsp1_rep	mRNA	25497325	25498429	.	+	.	ID=Os02t0635800-01;Name=Os02t0635800-01;Locus_id=Os02g0635800;Oryzabase Gene Symbol Synonym(s)=OsTCP7%2C CHE%2C TCP7;Oryzabase Gene Name Synonym(s)=TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 7;Note=Transcription factor%2C TCP domain containing protein.;Transcript_evidence=AK061568 (DDBJ%2C Best hit);ORF_evidence=B6UI34 (UniProt);InterPro=Transcription factor%2C TCP (IPR005333),Transcription factor TCP subgroup (IPR017887);NIAS_FLcDNA=006-311-F05;Oryzabase=12394;Expression=AK061568;TENOR=Os02t0635800-01;KEGG=Os02t0635800-01
Chr02	irgsp1_rep	five_prime_UTR	25497325	25497408	.	+	.	Parent=Os02t0635800-01
Chr02	irgsp1_rep	CDS	25497409	25498044	.	+	0	Parent=Os02t0635800-01
Chr02	irgsp1_rep	three_prime_UTR	25498045	25498429	.	+	.	Parent=Os02t0635800-01
Chr02	irgsp1_rep	mRNA	25506322	25506394	.	+	.	ID=Os02t0635966-00;Name=Os02t0635966-00;Locus_id=Os02g0635966;Note=Non-protein coding transcript.;Transcript_evidence=X02683 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0635966-00
Chr02	irgsp1_rep	exon	25506322	25506394	.	+	.	Parent=Os02t0635966-00
Chr02	irgsp1_rep	mRNA	25510882	25513587	.	-	.	ID=Os02t0636300-01;Name=Os02t0636300-01;Locus_id=Os02g0636300;Oryzabase Gene Symbol Synonym(s)=OsRH47A;Oryzabase Gene Name Synonym(s)=RNA helicase 47A;Note=DEAD-like helicase%2C N-terminal domain containing protein.;Transcript_evidence=AK100670 (DDBJ%2C Best hit);ORF_evidence=B7EJN3 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=J023112J15;Oryzabase=19153;Expression=AK100670;TENOR=Os02t0636300-01;KEGG=Os02t0636300-01
Chr02	irgsp1_rep	five_prime_UTR	25513459	25513587	.	-	.	Parent=Os02t0636300-01
Chr02	irgsp1_rep	five_prime_UTR	25512859	25512947	.	-	.	Parent=Os02t0636300-01
Chr02	irgsp1_rep	CDS	25511137	25512858	.	-	0	Parent=Os02t0636300-01
Chr02	irgsp1_rep	three_prime_UTR	25510882	25511136	.	-	.	Parent=Os02t0636300-01
Chr02	irgsp1_rep	mRNA	25514509	25515465	.	-	.	ID=Os02t0636400-01;Name=Os02t0636400-01;Locus_id=Os02g0636400;Note=Leucine-rich repeat%2C cysteine-containing subtype containing protein.;Transcript_evidence=AK063955 (DDBJ%2C Best hit);ORF_evidence=Q6H5X5 (UniProt);NIAS_FLcDNA=001-123-F12;Expression=AK063955;TENOR=Os02t0636400-01;KEGG=Os02t0636400-01
Chr02	irgsp1_rep	five_prime_UTR	25515465	25515465	.	-	.	Parent=Os02t0636400-01
Chr02	irgsp1_rep	CDS	25514862	25515464	.	-	0	Parent=Os02t0636400-01
Chr02	irgsp1_rep	three_prime_UTR	25514509	25514861	.	-	.	Parent=Os02t0636400-01
Chr02	irgsp1_rep	mRNA	25523466	25524380	.	-	.	ID=Os02t0636600-00;Name=Os02t0636600-00;Locus_id=Os02g0636600;Note=GRAM domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01HP4 (UniProt);InterPro=GRAM (IPR004182);TENOR=Os02t0636600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	25524212	25524380	.	-	0	Parent=Os02t0636600-00
Chr02	irgsp1_rep	CDS	25524035	25524103	.	-	2	Parent=Os02t0636600-00
Chr02	irgsp1_rep	CDS	25523466	25523917	.	-	2	Parent=Os02t0636600-00
Chr02	irgsp1_rep	mRNA	25527702	25529056	.	-	.	ID=Os02t0636700-01;Name=Os02t0636700-01;Locus_id=Os02g0636700;Note=GRAM domain containing protein.;Transcript_evidence=AK069779 (DDBJ%2C Best hit);ORF_evidence=D0ABE4 (UniProt);InterPro=GRAM (IPR004182);NIAS_FLcDNA=J023031H22;Expression=AK069779;TENOR=Os02t0636700-01;KEGG=Os02t0636700-01
Chr02	irgsp1_rep	five_prime_UTR	25528949	25529056	.	-	.	Parent=Os02t0636700-01
Chr02	irgsp1_rep	CDS	25528801	25528948	.	-	0	Parent=Os02t0636700-01
Chr02	irgsp1_rep	CDS	25528611	25528706	.	-	2	Parent=Os02t0636700-01
Chr02	irgsp1_rep	CDS	25528052	25528506	.	-	2	Parent=Os02t0636700-01
Chr02	irgsp1_rep	three_prime_UTR	25527702	25528051	.	-	.	Parent=Os02t0636700-01
Chr02	irgsp1_rep	mRNA	25539579	25540404	.	+	.	ID=Os02t0637000-01;Name=Os02t0637000-01;Locus_id=Os02g0637000;Note=Similar to OSIGBa0135K14.7 protein.;Transcript_evidence=AK243280 (DDBJ%2C Best hit);ORF_evidence=Q01LQ5 (UniProt);InterPro=Barwin-related endoglucanase (IPR009009);NIAS_FLcDNA=J100051C02;TENOR=Os02t0637000-01;KEGG=Os02t0637000-01
Chr02	irgsp1_rep	five_prime_UTR	25539579	25539580	.	+	.	Parent=Os02t0637000-01
Chr02	irgsp1_rep	CDS	25539581	25540060	.	+	0	Parent=Os02t0637000-01
Chr02	irgsp1_rep	three_prime_UTR	25540061	25540404	.	+	.	Parent=Os02t0637000-01
Chr02	irgsp1_rep	mRNA	25550305	25550944	.	-	.	ID=Os02t0637200-01;Name=Os02t0637200-01;Locus_id=Os02g0637200;Note=Conserved hypothetical protein.;Transcript_evidence=AK111101 (DDBJ%2C Best hit);ORF_evidence=A2X7L6 (UniProt);NIAS_FLcDNA=002-175-H01;Expression=AK111101;TENOR=Os02t0637200-01;KEGG=Os02t0637200-01
Chr02	irgsp1_rep	five_prime_UTR	25550819	25550944	.	-	.	Parent=Os02t0637200-01
Chr02	irgsp1_rep	CDS	25550573	25550818	.	-	0	Parent=Os02t0637200-01
Chr02	irgsp1_rep	three_prime_UTR	25550305	25550572	.	-	.	Parent=Os02t0637200-01
Chr02	irgsp1_rep	mRNA	25565865	25569036	.	-	.	ID=Os02t0637700-01;Name=Os02t0637700-01;Locus_id=Os02g0637700;Note=Similar to Alcohol dehydrogenase-like protein.;Transcript_evidence=AK073849 (DDBJ%2C Best hit);ORF_evidence=B6T5H2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),Alcohol dehydrogenase%2C zinc-type%2C conserved site (IPR002328),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033069E14;Expression=AK073849;TENOR=Os02t0637700-01;KEGG=Os02t0637700-01 (EC:1.1.1.1%2C EC:1.1.1.284)
Chr02	irgsp1_rep	five_prime_UTR	25568800	25569036	.	-	.	Parent=Os02t0637700-01
Chr02	irgsp1_rep	CDS	25568757	25568799	.	-	0	Parent=Os02t0637700-01
Chr02	irgsp1_rep	CDS	25568521	25568657	.	-	2	Parent=Os02t0637700-01
Chr02	irgsp1_rep	CDS	25568389	25568435	.	-	0	Parent=Os02t0637700-01
Chr02	irgsp1_rep	CDS	25567963	25568285	.	-	1	Parent=Os02t0637700-01
Chr02	irgsp1_rep	CDS	25567702	25567784	.	-	2	Parent=Os02t0637700-01
Chr02	irgsp1_rep	CDS	25567542	25567617	.	-	0	Parent=Os02t0637700-01
Chr02	irgsp1_rep	CDS	25567401	25567462	.	-	2	Parent=Os02t0637700-01
Chr02	irgsp1_rep	CDS	25566903	25566998	.	-	0	Parent=Os02t0637700-01
Chr02	irgsp1_rep	CDS	25566658	25566819	.	-	0	Parent=Os02t0637700-01
Chr02	irgsp1_rep	CDS	25566197	25566313	.	-	0	Parent=Os02t0637700-01
Chr02	irgsp1_rep	three_prime_UTR	25565865	25566196	.	-	.	Parent=Os02t0637700-01
Chr02	irgsp1_rep	mRNA	25565865	25568883	.	-	.	ID=Os02t0637700-02;Name=Os02t0637700-02;Locus_id=Os02g0637700;Note=Similar to Alcohol dehydrogenase 1.;Transcript_evidence=AK061291 (DDBJ%2C Best hit);ORF_evidence=B6T5H2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),GroES-like (IPR011032);NIAS_FLcDNA=006-301-A07;TENOR=Os02t0637700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	25568800	25568883	.	-	.	Parent=Os02t0637700-02
Chr02	irgsp1_rep	CDS	25568757	25568799	.	-	0	Parent=Os02t0637700-02
Chr02	irgsp1_rep	CDS	25568519	25568657	.	-	2	Parent=Os02t0637700-02
Chr02	irgsp1_rep	CDS	25567963	25568136	.	-	1	Parent=Os02t0637700-02
Chr02	irgsp1_rep	CDS	25567757	25567784	.	-	1	Parent=Os02t0637700-02
Chr02	irgsp1_rep	three_prime_UTR	25567702	25567756	.	-	.	Parent=Os02t0637700-02
Chr02	irgsp1_rep	three_prime_UTR	25567542	25567617	.	-	.	Parent=Os02t0637700-02
Chr02	irgsp1_rep	three_prime_UTR	25567401	25567462	.	-	.	Parent=Os02t0637700-02
Chr02	irgsp1_rep	three_prime_UTR	25566903	25566998	.	-	.	Parent=Os02t0637700-02
Chr02	irgsp1_rep	three_prime_UTR	25566658	25566819	.	-	.	Parent=Os02t0637700-02
Chr02	irgsp1_rep	three_prime_UTR	25565865	25566313	.	-	.	Parent=Os02t0637700-02
Chr02	irgsp1_rep	mRNA	25569292	25574908	.	-	.	ID=Os02t0637800-01;Name=Os02t0637800-01;Locus_id=Os02g0637800;Note=Hypothetical conserved gene.;Transcript_evidence=AK069750 (DDBJ%2C Best hit);ORF_evidence=B8AFT6 (UniProt);NIAS_FLcDNA=J023026L10;Expression=AK069750;TENOR=Os02t0637800-01;KEGG=Os02t0637800-01
Chr02	irgsp1_rep	five_prime_UTR	25574707	25574908	.	-	.	Parent=Os02t0637800-01
Chr02	irgsp1_rep	CDS	25574504	25574706	.	-	0	Parent=Os02t0637800-01
Chr02	irgsp1_rep	CDS	25573275	25573308	.	-	1	Parent=Os02t0637800-01
Chr02	irgsp1_rep	three_prime_UTR	25572752	25573274	.	-	.	Parent=Os02t0637800-01
Chr02	irgsp1_rep	three_prime_UTR	25572481	25572567	.	-	.	Parent=Os02t0637800-01
Chr02	irgsp1_rep	three_prime_UTR	25572220	25572389	.	-	.	Parent=Os02t0637800-01
Chr02	irgsp1_rep	three_prime_UTR	25571661	25571803	.	-	.	Parent=Os02t0637800-01
Chr02	irgsp1_rep	three_prime_UTR	25571395	25571572	.	-	.	Parent=Os02t0637800-01
Chr02	irgsp1_rep	three_prime_UTR	25570688	25571285	.	-	.	Parent=Os02t0637800-01
Chr02	irgsp1_rep	three_prime_UTR	25570376	25570488	.	-	.	Parent=Os02t0637800-01
Chr02	irgsp1_rep	three_prime_UTR	25570050	25570293	.	-	.	Parent=Os02t0637800-01
Chr02	irgsp1_rep	three_prime_UTR	25569292	25569758	.	-	.	Parent=Os02t0637800-01
Chr02	irgsp1_rep	mRNA	25569174	25574848	.	-	.	ID=Os02t0637800-02;Name=Os02t0637800-02;Locus_id=Os02g0637800;Note=Protein of unknown function DUF639 family protein.;Transcript_evidence=AK072512 (DDBJ%2C Best hit);ORF_evidence=B8AFT6 (UniProt);InterPro=Protein of unknown function DUF639 (IPR006927);NIAS_FLcDNA=J023128H23;Expression=AK072512;TENOR=Os02t0637800-02;KEGG=Os02t0637800-02
Chr02	irgsp1_rep	five_prime_UTR	25574707	25574848	.	-	.	Parent=Os02t0637800-02
Chr02	irgsp1_rep	CDS	25574504	25574706	.	-	0	Parent=Os02t0637800-02
Chr02	irgsp1_rep	CDS	25572752	25572992	.	-	1	Parent=Os02t0637800-02
Chr02	irgsp1_rep	CDS	25572481	25572567	.	-	0	Parent=Os02t0637800-02
Chr02	irgsp1_rep	CDS	25572220	25572389	.	-	0	Parent=Os02t0637800-02
Chr02	irgsp1_rep	CDS	25571661	25571803	.	-	1	Parent=Os02t0637800-02
Chr02	irgsp1_rep	CDS	25571395	25571572	.	-	2	Parent=Os02t0637800-02
Chr02	irgsp1_rep	CDS	25570688	25571285	.	-	1	Parent=Os02t0637800-02
Chr02	irgsp1_rep	CDS	25570376	25570488	.	-	0	Parent=Os02t0637800-02
Chr02	irgsp1_rep	CDS	25570050	25570293	.	-	1	Parent=Os02t0637800-02
Chr02	irgsp1_rep	CDS	25569531	25569758	.	-	0	Parent=Os02t0637800-02
Chr02	irgsp1_rep	three_prime_UTR	25569174	25569530	.	-	.	Parent=Os02t0637800-02
Chr02	irgsp1_rep	mRNA	25576773	25579160	.	+	.	ID=Os02t0637900-01;Name=Os02t0637900-01;Locus_id=Os02g0637900;Note=Conserved hypothetical protein.;Transcript_evidence=AK110708 (DDBJ%2C Best hit);ORF_evidence=B9F1A2 (UniProt);NIAS_FLcDNA=002-170-C09;Expression=AK110708;TENOR=Os02t0637900-01;KEGG=Os02t0637900-01
Chr02	irgsp1_rep	five_prime_UTR	25576773	25576880	.	+	.	Parent=Os02t0637900-01
Chr02	irgsp1_rep	CDS	25576881	25576929	.	+	0	Parent=Os02t0637900-01
Chr02	irgsp1_rep	CDS	25577033	25577103	.	+	2	Parent=Os02t0637900-01
Chr02	irgsp1_rep	CDS	25578038	25578086	.	+	0	Parent=Os02t0637900-01
Chr02	irgsp1_rep	CDS	25578168	25578274	.	+	2	Parent=Os02t0637900-01
Chr02	irgsp1_rep	CDS	25578526	25578605	.	+	0	Parent=Os02t0637900-01
Chr02	irgsp1_rep	CDS	25578682	25578973	.	+	1	Parent=Os02t0637900-01
Chr02	irgsp1_rep	three_prime_UTR	25578974	25579160	.	+	.	Parent=Os02t0637900-01
Chr02	irgsp1_rep	mRNA	25579455	25582096	.	-	.	ID=Os02t0638000-01;Name=Os02t0638000-01;Locus_id=Os02g0638000;Note=Conserved hypothetical protein.;Transcript_evidence=AK106548 (DDBJ%2C Best hit),AK103830 (DDBJ%2C Best hit);ORF_evidence=B8AFU2 (UniProt);NIAS_FLcDNA=002-108-F09,J033148A15;TENOR=Os02t0638000-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	25581992	25582096	.	-	.	Parent=Os02t0638000-01
Chr02	irgsp1_rep	CDS	25581946	25581991	.	-	0	Parent=Os02t0638000-01
Chr02	irgsp1_rep	CDS	25581683	25581839	.	-	2	Parent=Os02t0638000-01
Chr02	irgsp1_rep	CDS	25580957	25581260	.	-	1	Parent=Os02t0638000-01
Chr02	irgsp1_rep	CDS	25580618	25580776	.	-	0	Parent=Os02t0638000-01
Chr02	irgsp1_rep	CDS	25580327	25580508	.	-	0	Parent=Os02t0638000-01
Chr02	irgsp1_rep	CDS	25579697	25579790	.	-	1	Parent=Os02t0638000-01
Chr02	irgsp1_rep	three_prime_UTR	25579455	25579696	.	-	.	Parent=Os02t0638000-01
Chr02	irgsp1_rep	mRNA	25583503	25584493	.	-	.	ID=Os02t0638200-01;Name=Os02t0638200-01;Locus_id=Os02g0638200;Note=Similar to OSIGBa0115K01-H0319F09.22 protein.;Transcript_evidence=AK241544 (DDBJ%2C Best hit);ORF_evidence=Q01HN0 (UniProt);NIAS_FLcDNA=J065176A11;TENOR=Os02t0638200-01;KEGG=Os02t0638200-01
Chr02	irgsp1_rep	five_prime_UTR	25584492	25584493	.	-	.	Parent=Os02t0638200-01
Chr02	irgsp1_rep	CDS	25583775	25584491	.	-	0	Parent=Os02t0638200-01
Chr02	irgsp1_rep	three_prime_UTR	25583503	25583774	.	-	.	Parent=Os02t0638200-01
Chr02	irgsp1_rep	mRNA	25589927	25590697	.	-	.	ID=Os02t0638300-01;Name=Os02t0638300-01;Locus_id=Os02g0638300;Note=Similar to Ferredoxin-thioredoxin reductase%2C variable chain (FTR-V) (Ferredoxin- thioredoxin reductase subunit A) (FTR-A).;Transcript_evidence=AK107831 (DDBJ%2C Best hit);ORF_evidence=B6UCW8 (UniProt);GO=Biological Process: lipoate biosynthetic process (GO:0009107),Biological Process: photosynthesis (GO:0015979),Cellular Component: plastid (GO:0009536),Molecular Function: ferredoxin-NAD(P) reductase activity (GO:0008937),Molecular Function: lipoate synthase activity (GO:0016992),Molecular Function: 4 iron%2C 4 sulfur cluster binding (GO:0051539);InterPro=Lipoate synthase (IPR003698),Ferredoxin thioredoxin reductase%2C alpha chain (IPR004207),Electron transport accessory protein-like domain (IPR008990);NIAS_FLcDNA=002-133-G12;Expression=AK107831;TENOR=Os02t0638300-01;KEGG=Os02t0638300-01
Chr02	irgsp1_rep	five_prime_UTR	25590646	25590697	.	-	.	Parent=Os02t0638300-01
Chr02	irgsp1_rep	CDS	25590196	25590645	.	-	0	Parent=Os02t0638300-01
Chr02	irgsp1_rep	three_prime_UTR	25589927	25590195	.	-	.	Parent=Os02t0638300-01
Chr02	irgsp1_rep	mRNA	25592002	25595087	.	-	.	ID=Os02t0638400-01;Name=Os02t0638400-01;Locus_id=Os02g0638400;CGSNL Gene Symbol=ERF46;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 46;Oryzabase Gene Symbol Synonym(s)=OsERF#046%2C OsERF046%2C OsERF46;Oryzabase Gene Name Synonym(s)=ethylene response factor 46;Note=BRO1 domain containing protein.;Transcript_evidence=AK060633 (DDBJ%2C Best hit);ORF_evidence=NP_001152195.1 (RefSeq);InterPro=BRO1 domain (IPR004328);NIAS_FLcDNA=001-027-A12;Oryzabase=10563;Expression=AK060633;TENOR=Os02t0638400-01;KEGG=Os02t0638400-01
Chr02	irgsp1_rep	five_prime_UTR	25595076	25595087	.	-	.	Parent=Os02t0638400-01
Chr02	irgsp1_rep	CDS	25594458	25595075	.	-	0	Parent=Os02t0638400-01
Chr02	irgsp1_rep	CDS	25592304	25592747	.	-	0	Parent=Os02t0638400-01
Chr02	irgsp1_rep	three_prime_UTR	25592002	25592303	.	-	.	Parent=Os02t0638400-01
Chr02	irgsp1_rep	mRNA	25595575	25597607	.	-	.	ID=Os02t0638650-01;Name=Os02t0638650-01;Locus_id=Os02g0638650;CGSNL Gene Symbol=ERF141;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 141;Oryzabase Gene Symbol Synonym(s)=OsERF#141%2C OsERF141%2C AP2/EREBP#019%2C AP2/EREBP19;Oryzabase Gene Name Synonym(s)=ethylene response factor 141%2C APETALA2/ethylene-responsive element binding protein 19;Note=Pathogenesis-related transcriptional factor and ERF domain containing protein.;Transcript_evidence=AK242986 (DDBJ%2C Best hit);ORF_evidence=D0ABG1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J090094O16;Oryzabase=10634;TENOR=Os02t0638650-01;KEGG=Os02t0638650-01
Chr02	irgsp1_rep	five_prime_UTR	25597378	25597607	.	-	.	Parent=Os02t0638650-01
Chr02	irgsp1_rep	CDS	25595956	25597377	.	-	0	Parent=Os02t0638650-01
Chr02	irgsp1_rep	three_prime_UTR	25595575	25595955	.	-	.	Parent=Os02t0638650-01
Chr02	irgsp1_rep	mRNA	25619122	25624765	.	+	.	ID=Os02t0638900-01;Name=Os02t0638900-01;Locus_id=Os02g0638900;Oryzabase Gene Symbol Synonym(s)=OsWD40-47;Note=Similar to Signal transducer.;Transcript_evidence=AK111517 (DDBJ%2C Best hit);ORF_evidence=B6U7W0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J013002G07;Oryzabase=10728;TENOR=Os02t0638900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	25619122	25619122	.	+	.	Parent=Os02t0638900-01
Chr02	irgsp1_rep	CDS	25619123	25619381	.	+	0	Parent=Os02t0638900-01
Chr02	irgsp1_rep	CDS	25619419	25620569	.	+	2	Parent=Os02t0638900-01
Chr02	irgsp1_rep	CDS	25622512	25622602	.	+	0	Parent=Os02t0638900-01
Chr02	irgsp1_rep	CDS	25622685	25622842	.	+	2	Parent=Os02t0638900-01
Chr02	irgsp1_rep	CDS	25622938	25622989	.	+	0	Parent=Os02t0638900-01
Chr02	irgsp1_rep	CDS	25623635	25623699	.	+	2	Parent=Os02t0638900-01
Chr02	irgsp1_rep	three_prime_UTR	25623700	25623728	.	+	.	Parent=Os02t0638900-01
Chr02	irgsp1_rep	three_prime_UTR	25623839	25624765	.	+	.	Parent=Os02t0638900-01
Chr02	irgsp1_rep	mRNA	25622513	25624795	.	+	.	ID=Os02t0638900-02;Name=Os02t0638900-02;Locus_id=Os02g0638900;Oryzabase Gene Symbol Synonym(s)=OsWD40-47;Note=Similar to Signal transducer.;Transcript_evidence=AK103219 (DDBJ%2C Best hit);ORF_evidence=B6U7W0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J033122O03;Oryzabase=10728;Expression=AK103219;TENOR=Os02t0638900-02;KEGG=Os02t0638900-02
Chr02	irgsp1_rep	five_prime_UTR	25622513	25622514	.	+	.	Parent=Os02t0638900-02
Chr02	irgsp1_rep	CDS	25622515	25622602	.	+	0	Parent=Os02t0638900-02
Chr02	irgsp1_rep	CDS	25622685	25622842	.	+	2	Parent=Os02t0638900-02
Chr02	irgsp1_rep	CDS	25622938	25622989	.	+	0	Parent=Os02t0638900-02
Chr02	irgsp1_rep	CDS	25623419	25623501	.	+	2	Parent=Os02t0638900-02
Chr02	irgsp1_rep	CDS	25623635	25623728	.	+	0	Parent=Os02t0638900-02
Chr02	irgsp1_rep	CDS	25623839	25624368	.	+	2	Parent=Os02t0638900-02
Chr02	irgsp1_rep	three_prime_UTR	25624369	25624795	.	+	.	Parent=Os02t0638900-02
Chr02	irgsp1_rep	mRNA	25625632	25625755	.	+	.	ID=Os02t0638950-00;Name=Os02t0638950-00;Locus_id=Os02g0638950;Note=Non-protein coding transcript.;Transcript_evidence=X54621 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0638950-00
Chr02	irgsp1_rep	exon	25625632	25625755	.	+	.	Parent=Os02t0638950-00
Chr02	irgsp1_rep	mRNA	25626748	25636053	.	+	.	ID=Os02t0639000-01;Name=Os02t0639000-01;Locus_id=Os02g0639000;RAP-DB Gene Symbol Synonym(s)=LMS%2C OsLMS;RAP-DB Gene Name Synonym(s)=LESION MIMIC AND SENESCENCE;CGSNL Gene Symbol=LMS;CGSNL Gene Name=LESION MIMIC AND SENESCENCE;Oryzabase Gene Symbol Synonym(s)=OsLMS;Note=Double stranded RNA binding domain (dsRBD) containing protein%2C Regulation of stress responses;Transcript_evidence=AK067293,AK067711;ORF_evidence=Q6H5U8;InterPro=HAD-like domain (IPR023214),FCP1 homology domain (IPR004274),Double-stranded RNA-binding domain (IPR014720);NIAS_FLcDNA=J013105C11, J013116O21;Manual Curation=February 22%2C 2017;Literature_PMID=22976392;Oryzabase=10448;TENOR=Os02t0639000-01
Chr02	irgsp1_rep	five_prime_UTR	25626748	25627224	.	+	.	Parent=Os02t0639000-01
Chr02	irgsp1_rep	CDS	25627225	25627500	.	+	0	Parent=Os02t0639000-01
Chr02	irgsp1_rep	CDS	25628679	25629155	.	+	0	Parent=Os02t0639000-01
Chr02	irgsp1_rep	CDS	25629534	25629744	.	+	0	Parent=Os02t0639000-01
Chr02	irgsp1_rep	CDS	25629914	25630071	.	+	2	Parent=Os02t0639000-01
Chr02	irgsp1_rep	CDS	25630148	25630218	.	+	0	Parent=Os02t0639000-01
Chr02	irgsp1_rep	CDS	25630336	25630441	.	+	1	Parent=Os02t0639000-01
Chr02	irgsp1_rep	CDS	25630515	25630601	.	+	0	Parent=Os02t0639000-01
Chr02	irgsp1_rep	CDS	25631208	25631759	.	+	0	Parent=Os02t0639000-01
Chr02	irgsp1_rep	CDS	25631844	25631910	.	+	0	Parent=Os02t0639000-01
Chr02	irgsp1_rep	CDS	25632478	25632611	.	+	2	Parent=Os02t0639000-01
Chr02	irgsp1_rep	CDS	25632682	25632735	.	+	0	Parent=Os02t0639000-01
Chr02	irgsp1_rep	CDS	25632883	25632979	.	+	0	Parent=Os02t0639000-01
Chr02	irgsp1_rep	CDS	25633514	25633719	.	+	2	Parent=Os02t0639000-01
Chr02	irgsp1_rep	CDS	25633794	25633874	.	+	0	Parent=Os02t0639000-01
Chr02	irgsp1_rep	CDS	25634050	25634115	.	+	0	Parent=Os02t0639000-01
Chr02	irgsp1_rep	CDS	25634532	25634605	.	+	0	Parent=Os02t0639000-01
Chr02	irgsp1_rep	CDS	25635273	25635378	.	+	1	Parent=Os02t0639000-01
Chr02	irgsp1_rep	three_prime_UTR	25635379	25636053	.	+	.	Parent=Os02t0639000-01
Chr02	irgsp1_rep	mRNA	25639224	25640990	.	-	.	ID=Os02t0639100-00;Name=Os02t0639100-00;Locus_id=Os02g0639100;CGSNL Gene Symbol=RLCK78;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 78;Oryzabase Gene Symbol Synonym(s)=OsRLCK78;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 78;Note=Similar to H0801D08.12 protein.;Transcript_evidence=BT037090 (DDBJ);ORF_evidence=Q259E0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);Oryzabase=18790;TENOR=Os02t0639100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	25640976	25640990	.	-	.	Parent=Os02t0639100-00
Chr02	irgsp1_rep	CDS	25640927	25640975	.	-	0	Parent=Os02t0639100-00
Chr02	irgsp1_rep	CDS	25640567	25640682	.	-	2	Parent=Os02t0639100-00
Chr02	irgsp1_rep	CDS	25640201	25640411	.	-	0	Parent=Os02t0639100-00
Chr02	irgsp1_rep	CDS	25639883	25640120	.	-	2	Parent=Os02t0639100-00
Chr02	irgsp1_rep	CDS	25639659	25639803	.	-	1	Parent=Os02t0639100-00
Chr02	irgsp1_rep	CDS	25639224	25639574	.	-	0	Parent=Os02t0639100-00
Chr02	irgsp1_rep	mRNA	25646627	25648251	.	+	.	ID=Os02t0639300-01;Name=Os02t0639300-01;Locus_id=Os02g0639300;Oryzabase Gene Symbol Synonym(s)=OsCBSX11;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSX11%2C CBS domain containing protein OsCBSX11;Note=Conserved hypothetical protein.;Transcript_evidence=AK101596 (DDBJ%2C Best hit);ORF_evidence=A2X7M8 (UniProt);NIAS_FLcDNA=J033051G14;Oryzabase=10328;TENOR=Os02t0639300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	25646627	25646716	.	+	.	Parent=Os02t0639300-01
Chr02	irgsp1_rep	CDS	25646717	25647118	.	+	0	Parent=Os02t0639300-01
Chr02	irgsp1_rep	three_prime_UTR	25647119	25648251	.	+	.	Parent=Os02t0639300-01
Chr02	irgsp1_rep	mRNA	25652554	25659494	.	+	.	ID=Os02t0639500-01;Name=Os02t0639500-01;Locus_id=Os02g0639500;Note=Similar to Expansin-B16.;Transcript_evidence=AK240809 (DDBJ%2C Best hit);ORF_evidence=Q0DZ85 (UniProt);GO=Biological Process: sexual reproduction (GO:0019953),Cellular Component: extracellular region (GO:0005576);InterPro=Major pollen allergen Lol pI (IPR005795),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);NIAS_FLcDNA=J065006K12;TENOR=Os02t0639500-01;KEGG=Os02t0639500-01
Chr02	irgsp1_rep	CDS	25652554	25652707	.	+	0	Parent=Os02t0639500-01
Chr02	irgsp1_rep	CDS	25653997	25654303	.	+	2	Parent=Os02t0639500-01
Chr02	irgsp1_rep	CDS	25655015	25655144	.	+	1	Parent=Os02t0639500-01
Chr02	irgsp1_rep	CDS	25658790	25658984	.	+	0	Parent=Os02t0639500-01
Chr02	irgsp1_rep	three_prime_UTR	25658985	25659494	.	+	.	Parent=Os02t0639500-01
Chr02	irgsp1_rep	mRNA	25655001	25658982	.	-	.	ID=Os02t0639550-00;Name=Os02t0639550-00;Locus_id=Os02g0639550;Note=Hypothetical protein.;Transcript_evidence=EU947703 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0639550-00
Chr02	irgsp1_rep	five_prime_UTR	25658930	25658982	.	-	.	Parent=Os02t0639550-00
Chr02	irgsp1_rep	CDS	25658814	25658929	.	-	0	Parent=Os02t0639550-00
Chr02	irgsp1_rep	CDS	25655001	25655162	.	-	1	Parent=Os02t0639550-00
Chr02	irgsp1_rep	mRNA	25660296	25664328	.	+	.	ID=Os02t0639600-01;Name=Os02t0639600-01;Locus_id=Os02g0639600;Note=Similar to MLD (Degenerative spermatocyte homolog 1%2C lipid desaturase) (Migration-inducing gene 15 protein) (Sphingolipid delta 4 desaturase protein DES1).;Transcript_evidence=AK101968 (DDBJ%2C Best hit);ORF_evidence=A2Q4Q7 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: integral to membrane (GO:0016021),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705);InterPro=Fatty acid desaturase%2C type 1 (IPR005804),Sphingolipid delta4-desaturase (IPR011388),Sphingolipid delta4-desaturase%2C N-terminal (IPR013866);NIAS_FLcDNA=J033076J10;Expression=AK101968;TENOR=Os02t0639600-01;KEGG=Os02t0639600-01 (EC:1.14.-.-)
Chr02	irgsp1_rep	five_prime_UTR	25660296	25660595	.	+	.	Parent=Os02t0639600-01
Chr02	irgsp1_rep	CDS	25660596	25660760	.	+	0	Parent=Os02t0639600-01
Chr02	irgsp1_rep	CDS	25663265	25664086	.	+	0	Parent=Os02t0639600-01
Chr02	irgsp1_rep	three_prime_UTR	25664087	25664328	.	+	.	Parent=Os02t0639600-01
Chr02	irgsp1_rep	mRNA	25665014	25671633	.	+	.	ID=Os02t0639700-01;Name=Os02t0639700-01;Locus_id=Os02g0639700;Note=Region of unknown function DUF1771 domain containing protein.;Transcript_evidence=AK068974 (DDBJ%2C Best hit);ORF_evidence=A3A9F8 (UniProt);InterPro=Domain of unknown function DUF1771 (IPR013899);NIAS_FLcDNA=J023002E14;Expression=AK068974;TENOR=Os02t0639700-01;KEGG=Os02t0639700-01
Chr02	irgsp1_rep	five_prime_UTR	25665014	25665257	.	+	.	Parent=Os02t0639700-01
Chr02	irgsp1_rep	five_prime_UTR	25666280	25666322	.	+	.	Parent=Os02t0639700-01
Chr02	irgsp1_rep	CDS	25666323	25666890	.	+	0	Parent=Os02t0639700-01
Chr02	irgsp1_rep	CDS	25666981	25667006	.	+	2	Parent=Os02t0639700-01
Chr02	irgsp1_rep	CDS	25667166	25667237	.	+	0	Parent=Os02t0639700-01
Chr02	irgsp1_rep	CDS	25667829	25667893	.	+	0	Parent=Os02t0639700-01
Chr02	irgsp1_rep	CDS	25667987	25668225	.	+	1	Parent=Os02t0639700-01
Chr02	irgsp1_rep	CDS	25669233	25669321	.	+	2	Parent=Os02t0639700-01
Chr02	irgsp1_rep	CDS	25669431	25669487	.	+	0	Parent=Os02t0639700-01
Chr02	irgsp1_rep	CDS	25669848	25669915	.	+	0	Parent=Os02t0639700-01
Chr02	irgsp1_rep	CDS	25670018	25670124	.	+	1	Parent=Os02t0639700-01
Chr02	irgsp1_rep	CDS	25670205	25670275	.	+	2	Parent=Os02t0639700-01
Chr02	irgsp1_rep	CDS	25671124	25671228	.	+	0	Parent=Os02t0639700-01
Chr02	irgsp1_rep	three_prime_UTR	25671229	25671633	.	+	.	Parent=Os02t0639700-01
Chr02	irgsp1_rep	mRNA	25676613	25677242	.	-	.	ID=Os02t0639800-01;Name=Os02t0639800-01;Locus_id=Os02g0639800;CGSNL Gene Symbol=RDCP2;CGSNL Gene Name=RING DOMAIN-CONTAINING PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsRDCP2;Oryzabase Gene Name Synonym(s)=RING domain-containing protein 2;Note=Hypothetical gene.;Transcript_evidence=AK062818 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-107-E10;Oryzabase=9450;Expression=AK062818;TENOR=Os02t0639800-01;KEGG=Os02t0639800-01
Chr02	irgsp1_rep	five_prime_UTR	25677241	25677242	.	-	.	Parent=Os02t0639800-01
Chr02	irgsp1_rep	CDS	25676932	25677240	.	-	0	Parent=Os02t0639800-01
Chr02	irgsp1_rep	three_prime_UTR	25676613	25676931	.	-	.	Parent=Os02t0639800-01
Chr02	irgsp1_rep	mRNA	25671614	25677225	.	-	.	ID=Os02t0639800-02;Name=Os02t0639800-02;Locus_id=Os02g0639800;CGSNL Gene Symbol=RDCP2;CGSNL Gene Name=RING DOMAIN-CONTAINING PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsRDCP2;Oryzabase Gene Name Synonym(s)=RING domain-containing protein 2;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK071904 (DDBJ%2C Best hit);ORF_evidence=NP_001152715.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J013063D05;Oryzabase=9450;Expression=AK071904;TENOR=Os02t0639800-02;KEGG=Os02t0639800-02 (EC:6.3.2.19)
Chr02	irgsp1_rep	five_prime_UTR	25676915	25677225	.	-	.	Parent=Os02t0639800-02
Chr02	irgsp1_rep	five_prime_UTR	25672714	25672762	.	-	.	Parent=Os02t0639800-02
Chr02	irgsp1_rep	CDS	25671853	25672713	.	-	0	Parent=Os02t0639800-02
Chr02	irgsp1_rep	three_prime_UTR	25671614	25671852	.	-	.	Parent=Os02t0639800-02
Chr02	irgsp1_rep	mRNA	25674517	25677167	.	-	.	ID=Os02t0639800-03;Name=Os02t0639800-03;Locus_id=Os02g0639800;CGSNL Gene Symbol=RDCP2;CGSNL Gene Name=RING DOMAIN-CONTAINING PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsRDCP2;Oryzabase Gene Name Synonym(s)=RING domain-containing protein 2;Note=Hypothetical gene.;Transcript_evidence=AK062859 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-108-A12;Oryzabase=9450;Expression=AK062859;TENOR=Os02t0639800-03;KEGG=Os02t0639800-03
Chr02	irgsp1_rep	five_prime_UTR	25677166	25677167	.	-	.	Parent=Os02t0639800-03
Chr02	irgsp1_rep	CDS	25676932	25677165	.	-	0	Parent=Os02t0639800-03
Chr02	irgsp1_rep	three_prime_UTR	25676915	25676931	.	-	.	Parent=Os02t0639800-03
Chr02	irgsp1_rep	three_prime_UTR	25674517	25674848	.	-	.	Parent=Os02t0639800-03
Chr02	irgsp1_rep	mRNA	25672275	25675323	.	-	.	ID=Os02t0639800-04;Name=Os02t0639800-04;Locus_id=Os02g0639800;CGSNL Gene Symbol=RDCP2;CGSNL Gene Name=RING DOMAIN-CONTAINING PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsRDCP2;Oryzabase Gene Name Synonym(s)=RING domain-containing protein 2;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK070367 (DDBJ%2C Best hit);ORF_evidence=longestORF;GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J023049F10;Oryzabase=9450;TENOR=Os02t0639800-04
Chr02	irgsp1_rep	five_prime_UTR	25672880	25675323	.	-	.	Parent=Os02t0639800-04
Chr02	irgsp1_rep	five_prime_UTR	25672714	25672762	.	-	.	Parent=Os02t0639800-04
Chr02	irgsp1_rep	CDS	25672275	25672713	.	-	0	Parent=Os02t0639800-04
Chr02	irgsp1_rep	mRNA	25671552	25673590	.	-	.	ID=Os02t0639800-05;Name=Os02t0639800-05;Locus_id=Os02g0639800;CGSNL Gene Symbol=RDCP2;CGSNL Gene Name=RING DOMAIN-CONTAINING PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsRDCP2;Oryzabase Gene Name Synonym(s)=RING domain-containing protein 2;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK105980 (DDBJ%2C Best hit);ORF_evidence=NP_001152715.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=001-205-F11;Oryzabase=9450;Expression=AK105980;TENOR=Os02t0639800-05;KEGG=Os02t0639800-05 (EC:6.3.2.19)
Chr02	irgsp1_rep	five_prime_UTR	25672714	25673590	.	-	.	Parent=Os02t0639800-05
Chr02	irgsp1_rep	CDS	25671853	25672713	.	-	0	Parent=Os02t0639800-05
Chr02	irgsp1_rep	three_prime_UTR	25671552	25671852	.	-	.	Parent=Os02t0639800-05
Chr02	irgsp1_rep	mRNA	25679890	25683601	.	-	.	ID=Os02t0639900-01;Name=Os02t0639900-01;Locus_id=Os02g0639900;CGSNL Gene Symbol=TRXM1;CGSNL Gene Name=THIOREDOXIN M-TYPE 1;Oryzabase Gene Symbol Synonym(s)=OsTRXM1;Oryzabase Gene Name Synonym(s)=thioredoxin M1;Note=Similar to Thioredoxin M-type%2C chloroplast precursor (TRX-M).;Transcript_evidence=AK099517 (DDBJ%2C Best hit);ORF_evidence=NP_001150752.1 (RefSeq);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Thioredoxin (IPR005746),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766),Thioredoxin%2C conserved site (IPR017937);NIAS_FLcDNA=J013030D01;Oryzabase=22389;Expression=AK099517;TENOR=Os02t0639900-01;KEGG=Os02t0639900-01
Chr02	irgsp1_rep	five_prime_UTR	25683524	25683601	.	-	.	Parent=Os02t0639900-01
Chr02	irgsp1_rep	CDS	25683322	25683523	.	-	0	Parent=Os02t0639900-01
Chr02	irgsp1_rep	CDS	25680134	25680453	.	-	2	Parent=Os02t0639900-01
Chr02	irgsp1_rep	three_prime_UTR	25679890	25680133	.	-	.	Parent=Os02t0639900-01
Chr02	irgsp1_rep	mRNA	25684044	25687113	.	+	.	ID=Os02t0640000-01;Name=Os02t0640000-01;Locus_id=Os02g0640000;Note=C2 calcium-dependent membrane targeting domain containing protein.;Transcript_evidence=AK120841 (DDBJ%2C Best hit);ORF_evidence=B6UGX7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=J023022G19;Expression=AK120841;TENOR=Os02t0640000-01;KEGG=Os02t0640000-01
Chr02	irgsp1_rep	five_prime_UTR	25684044	25684137	.	+	.	Parent=Os02t0640000-01
Chr02	irgsp1_rep	CDS	25684138	25684204	.	+	0	Parent=Os02t0640000-01
Chr02	irgsp1_rep	CDS	25685015	25685080	.	+	2	Parent=Os02t0640000-01
Chr02	irgsp1_rep	CDS	25685473	25685599	.	+	2	Parent=Os02t0640000-01
Chr02	irgsp1_rep	CDS	25685743	25685857	.	+	1	Parent=Os02t0640000-01
Chr02	irgsp1_rep	CDS	25686756	25686812	.	+	0	Parent=Os02t0640000-01
Chr02	irgsp1_rep	three_prime_UTR	25686813	25687113	.	+	.	Parent=Os02t0640000-01
Chr02	irgsp1_rep	mRNA	25689454	25690540	.	-	.	ID=Os02t0640100-00;Name=Os02t0640100-00;Locus_id=Os02g0640100;Note=Hypothetical conserved gene.;Transcript_evidence=CT835308 (DDBJ%2C Best hit);ORF_evidence=A8R3M3 (UniProt);TENOR=Os02t0640100-00;KEGG=Os02t0640100-00
Chr02	irgsp1_rep	five_prime_UTR	25690281	25690540	.	-	.	Parent=Os02t0640100-00
Chr02	irgsp1_rep	CDS	25690017	25690280	.	-	0	Parent=Os02t0640100-00
Chr02	irgsp1_rep	three_prime_UTR	25689881	25690016	.	-	.	Parent=Os02t0640100-00
Chr02	irgsp1_rep	three_prime_UTR	25689454	25689830	.	-	.	Parent=Os02t0640100-00
Chr02	irgsp1_rep	mRNA	25693917	25696533	.	+	.	ID=Os02t0640200-01;Name=Os02t0640200-01;Locus_id=Os02g0640200;Note=Conserved hypothetical protein.;Transcript_evidence=AK069773 (DDBJ%2C Best hit);ORF_evidence=A2X7N5 (UniProt);NIAS_FLcDNA=J023027E08;TENOR=Os02t0640200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	25693917	25694076	.	+	.	Parent=Os02t0640200-01
Chr02	irgsp1_rep	five_prime_UTR	25694238	25694253	.	+	.	Parent=Os02t0640200-01
Chr02	irgsp1_rep	CDS	25694254	25694583	.	+	0	Parent=Os02t0640200-01
Chr02	irgsp1_rep	CDS	25694675	25694768	.	+	0	Parent=Os02t0640200-01
Chr02	irgsp1_rep	CDS	25695153	25695274	.	+	2	Parent=Os02t0640200-01
Chr02	irgsp1_rep	CDS	25695512	25695634	.	+	0	Parent=Os02t0640200-01
Chr02	irgsp1_rep	CDS	25695978	25696082	.	+	0	Parent=Os02t0640200-01
Chr02	irgsp1_rep	CDS	25696180	25696221	.	+	0	Parent=Os02t0640200-01
Chr02	irgsp1_rep	three_prime_UTR	25696222	25696533	.	+	.	Parent=Os02t0640200-01
Chr02	irgsp1_rep	mRNA	25695151	25696532	.	+	.	ID=Os02t0640200-02;Name=Os02t0640200-02;Locus_id=Os02g0640200;Note=Hypothetical conserved gene.;Transcript_evidence=AK058351 (DDBJ%2C Best hit);ORF_evidence=A2X7N5 (UniProt);NIAS_FLcDNA=001-014-E07;Expression=AK058351;TENOR=Os02t0640200-02;KEGG=Os02t0640200-02
Chr02	irgsp1_rep	five_prime_UTR	25695151	25695151	.	+	.	Parent=Os02t0640200-02
Chr02	irgsp1_rep	CDS	25695152	25695274	.	+	0	Parent=Os02t0640200-02
Chr02	irgsp1_rep	CDS	25695512	25695634	.	+	0	Parent=Os02t0640200-02
Chr02	irgsp1_rep	CDS	25695978	25696082	.	+	0	Parent=Os02t0640200-02
Chr02	irgsp1_rep	CDS	25696180	25696221	.	+	0	Parent=Os02t0640200-02
Chr02	irgsp1_rep	three_prime_UTR	25696222	25696532	.	+	.	Parent=Os02t0640200-02
Chr02	irgsp1_rep	mRNA	25696949	25698399	.	-	.	ID=Os02t0640300-01;Name=Os02t0640300-01;Locus_id=Os02g0640300;Note=Similar to Membrane steroid binding protein 1 (AtMP1).;Transcript_evidence=AK069079 (DDBJ%2C Best hit);ORF_evidence=A6MZZ5 (UniProt);GO=Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome b5 (IPR001199);NIAS_FLcDNA=J023006E15;Expression=AK069079;TENOR=Os02t0640300-01;KEGG=Os02t0640300-01
Chr02	irgsp1_rep	five_prime_UTR	25698293	25698399	.	-	.	Parent=Os02t0640300-01
Chr02	irgsp1_rep	CDS	25697988	25698292	.	-	0	Parent=Os02t0640300-01
Chr02	irgsp1_rep	CDS	25697144	25697840	.	-	1	Parent=Os02t0640300-01
Chr02	irgsp1_rep	three_prime_UTR	25696949	25697143	.	-	.	Parent=Os02t0640300-01
Chr02	irgsp1_rep	mRNA	25698500	25698889	.	+	.	ID=Os02t0640401-00;Name=Os02t0640401-00;Locus_id=Os02g0640401;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os02t0640401-00;KEGG=Os02t0640401-00
Chr02	irgsp1_rep	CDS	25698500	25698889	.	+	0	Parent=Os02t0640401-00
Chr02	irgsp1_rep	mRNA	25723956	25726080	.	-	.	ID=Os02t0640500-01;Name=Os02t0640500-01;Locus_id=Os02g0640500;RAP-DB Gene Symbol Synonym(s)=SIT1;RAP-DB Gene Name Synonym(s)=Salt Intolerance 1;CGSNL Gene Symbol=SIT1;CGSNL Gene Name=SALT INTOLERANCE1;Oryzabase Gene Symbol Synonym(s)=OsSIT1;Oryzabase Gene Name Synonym(s)=Salt Intolerance 1;Note=Lectin receptor-like kinase%2C Mediation of salt sensitivity%2C Regulation of ethylene homeostasis;Transcript_evidence=AK107491;ORF_evidence=Q6H7D2;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Concanavalin A-like lectin/glucanases superfamily (IPR008985),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Legume lectin domain (IPR001220),Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Legume lectin%2C beta chain%2C Mn/Ca-binding site (IPR019825),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=002-129-D02;Manual Curation=June 11%2C 2014;Literature_PMID=24907341;Oryzabase=18335;Expression=AK107491;TENOR=Os02t0640500-01;KEGG=Os02t0640500-01
Chr02	irgsp1_rep	five_prime_UTR	25726065	25726080	.	-	.	Parent=Os02t0640500-01
Chr02	irgsp1_rep	CDS	25724040	25726064	.	-	0	Parent=Os02t0640500-01
Chr02	irgsp1_rep	three_prime_UTR	25723956	25724039	.	-	.	Parent=Os02t0640500-01
Chr02	irgsp1_rep	mRNA	25727478	25730345	.	+	.	ID=Os02t0640600-00;Name=Os02t0640600-00;Locus_id=Os02g0640600;Note=Short-chain dehydrogenase/reductase SDR domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6H7D1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);TENOR=Os02t0640600-00
Chr02	irgsp1_rep	CDS	25727478	25727557	.	+	0	Parent=Os02t0640600-00
Chr02	irgsp1_rep	CDS	25727703	25727853	.	+	1	Parent=Os02t0640600-00
Chr02	irgsp1_rep	CDS	25728049	25728135	.	+	0	Parent=Os02t0640600-00
Chr02	irgsp1_rep	CDS	25728567	25728752	.	+	0	Parent=Os02t0640600-00
Chr02	irgsp1_rep	CDS	25729034	25729336	.	+	0	Parent=Os02t0640600-00
Chr02	irgsp1_rep	CDS	25729644	25729732	.	+	0	Parent=Os02t0640600-00
Chr02	irgsp1_rep	CDS	25730123	25730345	.	+	1	Parent=Os02t0640600-00
Chr02	irgsp1_rep	mRNA	25730522	25732253	.	+	.	ID=Os02t0640700-01;Name=Os02t0640700-01;Locus_id=Os02g0640700;Note=UBX domain containing protein.;Transcript_evidence=AK106833 (DDBJ%2C Best hit);ORF_evidence=A2X7N9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=UBX (IPR001012),UBA-like (IPR009060);NIAS_FLcDNA=002-116-F12;Expression=AK106833;TENOR=Os02t0640700-01;KEGG=Os02t0640700-01
Chr02	irgsp1_rep	five_prime_UTR	25730522	25730576	.	+	.	Parent=Os02t0640700-01
Chr02	irgsp1_rep	CDS	25730577	25732145	.	+	0	Parent=Os02t0640700-01
Chr02	irgsp1_rep	three_prime_UTR	25732146	25732253	.	+	.	Parent=Os02t0640700-01
Chr02	irgsp1_rep	mRNA	25732975	25736658	.	+	.	ID=Os02t0640800-01;Name=Os02t0640800-01;Locus_id=Os02g0640800;Note=Similar to Carbonyl reductase 1.;Transcript_evidence=AK069956 (DDBJ%2C Best hit);ORF_evidence=B4FSX7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023036L11;TENOR=Os02t0640800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	25732975	25734527	.	+	.	Parent=Os02t0640800-01
Chr02	irgsp1_rep	CDS	25734528	25734568	.	+	0	Parent=Os02t0640800-01
Chr02	irgsp1_rep	CDS	25734666	25734909	.	+	1	Parent=Os02t0640800-01
Chr02	irgsp1_rep	CDS	25735363	25735398	.	+	0	Parent=Os02t0640800-01
Chr02	irgsp1_rep	three_prime_UTR	25735399	25735412	.	+	.	Parent=Os02t0640800-01
Chr02	irgsp1_rep	three_prime_UTR	25735492	25735686	.	+	.	Parent=Os02t0640800-01
Chr02	irgsp1_rep	three_prime_UTR	25735996	25736658	.	+	.	Parent=Os02t0640800-01
Chr02	irgsp1_rep	mRNA	25733049	25735089	.	+	.	ID=Os02t0640800-02;Name=Os02t0640800-02;Locus_id=Os02g0640800;Note=Similar to Carbonyl reductase 1.;Transcript_evidence=AK067764 (DDBJ%2C Best hit);ORF_evidence=B4FSX7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013119E06;TENOR=Os02t0640800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	25733049	25734527	.	+	.	Parent=Os02t0640800-02
Chr02	irgsp1_rep	CDS	25734528	25734568	.	+	0	Parent=Os02t0640800-02
Chr02	irgsp1_rep	CDS	25734666	25734948	.	+	1	Parent=Os02t0640800-02
Chr02	irgsp1_rep	three_prime_UTR	25734949	25735089	.	+	.	Parent=Os02t0640800-02
Chr02	irgsp1_rep	mRNA	25734461	25736487	.	+	.	ID=Os02t0640800-03;Name=Os02t0640800-03;Locus_id=Os02g0640800;Note=Similar to carbonyl reductase 1.;Transcript_evidence=AK061368 (DDBJ%2C Best hit);ORF_evidence=B4FSX7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=006-304-D09;Expression=AK061368;TENOR=Os02t0640800-03;KEGG=Os02t0640800-03 (EC:1.1.1.184)
Chr02	irgsp1_rep	five_prime_UTR	25734461	25734527	.	+	.	Parent=Os02t0640800-03
Chr02	irgsp1_rep	CDS	25734528	25734568	.	+	0	Parent=Os02t0640800-03
Chr02	irgsp1_rep	CDS	25734666	25734909	.	+	1	Parent=Os02t0640800-03
Chr02	irgsp1_rep	CDS	25735350	25735412	.	+	0	Parent=Os02t0640800-03
Chr02	irgsp1_rep	CDS	25735492	25735686	.	+	0	Parent=Os02t0640800-03
Chr02	irgsp1_rep	CDS	25735996	25736400	.	+	0	Parent=Os02t0640800-03
Chr02	irgsp1_rep	three_prime_UTR	25736401	25736487	.	+	.	Parent=Os02t0640800-03
Chr02	irgsp1_rep	mRNA	25739720	25740833	.	-	.	ID=Os02t0641000-00;Name=Os02t0641000-00;Locus_id=Os02g0641000;Oryzabase Gene Symbol Synonym(s)=OsPLIM2a;Note=Zinc finger%2C LIM-type domain containing protein.;Transcript_evidence=EU976500 (DDBJ);ORF_evidence=NP_001047550.1 (RefSeq);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C LIM-type (IPR001781);Oryzabase=9931;TENOR=Os02t0641000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	25740793	25740833	.	-	.	Parent=Os02t0641000-00
Chr02	irgsp1_rep	CDS	25740685	25740792	.	-	0	Parent=Os02t0641000-00
Chr02	irgsp1_rep	CDS	25740393	25740482	.	-	0	Parent=Os02t0641000-00
Chr02	irgsp1_rep	CDS	25739720	25739986	.	-	0	Parent=Os02t0641000-00
Chr02	irgsp1_rep	mRNA	25742377	25742996	.	+	.	ID=Os02t0641100-00;Name=Os02t0641100-00;Locus_id=Os02g0641100;Note=Similar to TCP-domain protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B6U2U5 (UniProt);InterPro=Transcription factor%2C TCP (IPR005333),Transcription factor TCP subgroup (IPR017887);TENOR=Os02t0641100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	25742377	25742631	.	+	0	Parent=Os02t0641100-00
Chr02	irgsp1_rep	CDS	25742724	25742996	.	+	0	Parent=Os02t0641100-00
Chr02	irgsp1_rep	mRNA	25759841	25762800	.	+	.	ID=Os02t0641300-00;Name=Os02t0641300-00;Locus_id=Os02g0641300;Oryzabase Gene Symbol Synonym(s)=R2R3-MYB;Note=Hypothetical conserved gene.;Transcript_evidence=CT837840 (DDBJ%2C Best hit);ORF_evidence=B4FNQ6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),MYB-like (IPR017877);Oryzabase=16298;TENOR=Os02t0641300-00;KEGG=Os02t0641300-00
Chr02	irgsp1_rep	five_prime_UTR	25759841	25759967	.	+	.	Parent=Os02t0641300-00
Chr02	irgsp1_rep	CDS	25759968	25760195	.	+	0	Parent=Os02t0641300-00
Chr02	irgsp1_rep	three_prime_UTR	25760196	25760576	.	+	.	Parent=Os02t0641300-00
Chr02	irgsp1_rep	three_prime_UTR	25761966	25762800	.	+	.	Parent=Os02t0641300-00
Chr02	irgsp1_rep	mRNA	25767209	25774440	.	+	.	ID=Os02t0641800-01;Name=Os02t0641800-01;Locus_id=Os02g0641800;Oryzabase Gene Symbol Synonym(s)=OsRH8;Oryzabase Gene Name Synonym(s)=RNA helicase 8;Note=Similar to RNA helicase (Fragment).;Transcript_evidence=AK066504 (DDBJ%2C Best hit);ORF_evidence=B7EKD5 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=RNA helicase%2C ATP-dependent%2C DEAD-box%2C conserved site (IPR000629),Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=J013073G20;Oryzabase=19128;Expression=AK066504;TENOR=Os02t0641800-01;KEGG=Os02t0641800-01 (EC:3.6.4.13)
Chr02	irgsp1_rep	five_prime_UTR	25767209	25767501	.	+	.	Parent=Os02t0641800-01
Chr02	irgsp1_rep	CDS	25767502	25767584	.	+	0	Parent=Os02t0641800-01
Chr02	irgsp1_rep	CDS	25767660	25767818	.	+	1	Parent=Os02t0641800-01
Chr02	irgsp1_rep	CDS	25768223	25768283	.	+	1	Parent=Os02t0641800-01
Chr02	irgsp1_rep	CDS	25769332	25769566	.	+	0	Parent=Os02t0641800-01
Chr02	irgsp1_rep	CDS	25769799	25770037	.	+	2	Parent=Os02t0641800-01
Chr02	irgsp1_rep	CDS	25771207	25771458	.	+	0	Parent=Os02t0641800-01
Chr02	irgsp1_rep	CDS	25771550	25771730	.	+	0	Parent=Os02t0641800-01
Chr02	irgsp1_rep	CDS	25772371	25772459	.	+	2	Parent=Os02t0641800-01
Chr02	irgsp1_rep	CDS	25772776	25772849	.	+	0	Parent=Os02t0641800-01
Chr02	irgsp1_rep	CDS	25772936	25773014	.	+	1	Parent=Os02t0641800-01
Chr02	irgsp1_rep	three_prime_UTR	25773015	25773091	.	+	.	Parent=Os02t0641800-01
Chr02	irgsp1_rep	three_prime_UTR	25773831	25774440	.	+	.	Parent=Os02t0641800-01
Chr02	irgsp1_rep	mRNA	25767387	25774435	.	+	.	ID=Os02t0641800-02;Name=Os02t0641800-02;Locus_id=Os02g0641800;Oryzabase Gene Symbol Synonym(s)=OsRH8;Oryzabase Gene Name Synonym(s)=RNA helicase 8;Note=Similar to ATP-dependent RNA helicase dhh1.;Transcript_evidence=AK072124 (DDBJ%2C Best hit);ORF_evidence=NP_001148960.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=RNA helicase%2C ATP-dependent%2C DEAD-box%2C conserved site (IPR000629),Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=J013124F19;Oryzabase=19128;Expression=AK072124;TENOR=Os02t0641800-02;KEGG=Os02t0641800-02 (EC:3.6.4.13)
Chr02	irgsp1_rep	five_prime_UTR	25767387	25767501	.	+	.	Parent=Os02t0641800-02
Chr02	irgsp1_rep	CDS	25767502	25767818	.	+	0	Parent=Os02t0641800-02
Chr02	irgsp1_rep	CDS	25768223	25768283	.	+	1	Parent=Os02t0641800-02
Chr02	irgsp1_rep	CDS	25769332	25769566	.	+	0	Parent=Os02t0641800-02
Chr02	irgsp1_rep	CDS	25769799	25770037	.	+	2	Parent=Os02t0641800-02
Chr02	irgsp1_rep	CDS	25771207	25771458	.	+	0	Parent=Os02t0641800-02
Chr02	irgsp1_rep	CDS	25771550	25771730	.	+	0	Parent=Os02t0641800-02
Chr02	irgsp1_rep	CDS	25772371	25772459	.	+	2	Parent=Os02t0641800-02
Chr02	irgsp1_rep	CDS	25772776	25772849	.	+	0	Parent=Os02t0641800-02
Chr02	irgsp1_rep	CDS	25772936	25773014	.	+	1	Parent=Os02t0641800-02
Chr02	irgsp1_rep	three_prime_UTR	25773015	25773091	.	+	.	Parent=Os02t0641800-02
Chr02	irgsp1_rep	three_prime_UTR	25773831	25774435	.	+	.	Parent=Os02t0641800-02
Chr02	irgsp1_rep	mRNA	25776689	25778145	.	-	.	ID=Os02t0641850-01;Name=Os02t0641850-01;Locus_id=Os02g0641850;Note=Non-protein coding transcript.;Transcript_evidence=AK110856 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-172-D01;TENOR=Os02t0641850-01
Chr02	irgsp1_rep	exon	25776689	25778145	.	-	.	Parent=Os02t0641850-01
Chr02	irgsp1_rep	mRNA	25778113	25780795	.	+	.	ID=Os02t0641900-01;Name=Os02t0641900-01;Locus_id=Os02g0641900;RAP-DB Gene Symbol Synonym(s)=OsMYB38;Oryzabase Gene Symbol Synonym(s)=Osmyb7%2C myb7%2C OsMYB38%2C MYB38;Oryzabase Gene Name Synonym(s)=myb transcription factor 7%2C transcription factor MYB7;Note=MYB transcription factor%2C Cold stress-response;Transcript_evidence=AK108621;ORF_evidence=Q6H7S0;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeobox-like domain superfamily (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930);NIAS_FLcDNA=002-147-D04;Manual Curation=May 12%2C 2020;Literature_PMID=30940336;Oryzabase=10255;TENOR=Os02t0641900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	25778113	25778231	.	+	.	Parent=Os02t0641900-01
Chr02	irgsp1_rep	CDS	25778232	25778364	.	+	0	Parent=Os02t0641900-01
Chr02	irgsp1_rep	CDS	25778873	25779002	.	+	2	Parent=Os02t0641900-01
Chr02	irgsp1_rep	CDS	25779780	25780419	.	+	1	Parent=Os02t0641900-01
Chr02	irgsp1_rep	three_prime_UTR	25780420	25780795	.	+	.	Parent=Os02t0641900-01
Chr02	irgsp1_rep	mRNA	25779761	25780436	.	-	.	ID=Os02t0642050-00;Name=Os02t0642050-00;Locus_id=Os02g0642050;Note=Hypothetical gene.;Transcript_evidence=EU971393 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0642050-00;KEGG=Os02t0642050-00
Chr02	irgsp1_rep	five_prime_UTR	25780284	25780436	.	-	.	Parent=Os02t0642050-00
Chr02	irgsp1_rep	CDS	25779924	25780283	.	-	0	Parent=Os02t0642050-00
Chr02	irgsp1_rep	three_prime_UTR	25779761	25779923	.	-	.	Parent=Os02t0642050-00
Chr02	irgsp1_rep	mRNA	25789355	25791213	.	-	.	ID=Os02t0642200-01;Name=Os02t0642200-01;Locus_id=Os02g0642200;CGSNL Gene Symbol=REM1.4;CGSNL Gene Name=REMORIN 1.4;Oryzabase Gene Symbol Synonym(s)=OsREM1.4;Oryzabase Gene Name Synonym(s)=Remorin 1.4%2C remorin group 1 member 4;Note=Similar to Remorin.;Transcript_evidence=AK105194 (DDBJ%2C Best hit);ORF_evidence=NP_001159012.1 (RefSeq);InterPro=Remorin%2C C-terminal (IPR005516);NIAS_FLcDNA=001-107-E02;Oryzabase=20272;Expression=AK105194;TENOR=Os02t0642200-01;KEGG=Os02t0642200-01
Chr02	irgsp1_rep	five_prime_UTR	25791064	25791213	.	-	.	Parent=Os02t0642200-01
Chr02	irgsp1_rep	CDS	25790895	25791063	.	-	0	Parent=Os02t0642200-01
Chr02	irgsp1_rep	CDS	25790569	25790640	.	-	2	Parent=Os02t0642200-01
Chr02	irgsp1_rep	CDS	25790398	25790485	.	-	2	Parent=Os02t0642200-01
Chr02	irgsp1_rep	CDS	25790136	25790217	.	-	1	Parent=Os02t0642200-01
Chr02	irgsp1_rep	CDS	25789500	25789700	.	-	0	Parent=Os02t0642200-01
Chr02	irgsp1_rep	three_prime_UTR	25789355	25789499	.	-	.	Parent=Os02t0642200-01
Chr02	irgsp1_rep	mRNA	25797297	25797847	.	-	.	ID=Os02t0642300-01;Name=Os02t0642300-01;Locus_id=Os02g0642300;Note=CytoChrome b561 family protein.;Transcript_evidence=AK062638 (DDBJ%2C Best hit);ORF_evidence=B6TAB6 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=CytoChrome b561%2C eukaryote (IPR004877),CytoChrome b561/ferric reductase transmembrane (IPR006593);NIAS_FLcDNA=001-105-D05;Expression=AK062638;TENOR=Os02t0642300-01;KEGG=Os02t0642300-01
Chr02	irgsp1_rep	CDS	25797536	25797847	.	-	0	Parent=Os02t0642300-01
Chr02	irgsp1_rep	three_prime_UTR	25797297	25797535	.	-	.	Parent=Os02t0642300-01
Chr02	irgsp1_rep	mRNA	25805954	25813559	.	-	.	ID=Os02t0642600-01;Name=Os02t0642600-01;Locus_id=Os02g0642600;RAP-DB Gene Symbol Synonym(s)=OsSHOC1;RAP-DB Gene Name Synonym(s)=Shortage in chiasmata 1;CGSNL Gene Symbol=SHOC1;CGSNL Gene Name=SHORTAGE IN CHIASMATA 1;Oryzabase Gene Symbol Synonym(s)=OsSHOC1;Oryzabase Gene Name Synonym(s)=Shortage in chiasmata 1;Note=Meiotic component%2C Regulation of crossover formation;Transcript_evidence=AK240672;ORF_evidence=A0A0P0VMC7;NIAS_FLcDNA=J033121N18;Manual Curation=April 22%2C 2019;Literature_PMID=30589140;Oryzabase=23005;TENOR=Os02t0642600-01;KEGG=Os02t0642600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737), plasma membrane (GO:0005886)
Chr02	irgsp1_rep	five_prime_UTR	25813411	25813559	.	-	.	Parent=Os02t0642600-01
Chr02	irgsp1_rep	CDS	25813129	25813410	.	-	0	Parent=Os02t0642600-01
Chr02	irgsp1_rep	CDS	25812860	25812944	.	-	0	Parent=Os02t0642600-01
Chr02	irgsp1_rep	CDS	25812696	25812778	.	-	2	Parent=Os02t0642600-01
Chr02	irgsp1_rep	CDS	25812551	25812607	.	-	0	Parent=Os02t0642600-01
Chr02	irgsp1_rep	CDS	25812375	25812467	.	-	0	Parent=Os02t0642600-01
Chr02	irgsp1_rep	CDS	25809962	25811916	.	-	0	Parent=Os02t0642600-01
Chr02	irgsp1_rep	CDS	25809219	25809426	.	-	1	Parent=Os02t0642600-01
Chr02	irgsp1_rep	CDS	25808103	25808840	.	-	0	Parent=Os02t0642600-01
Chr02	irgsp1_rep	CDS	25806434	25807936	.	-	0	Parent=Os02t0642600-01
Chr02	irgsp1_rep	CDS	25806233	25806349	.	-	0	Parent=Os02t0642600-01
Chr02	irgsp1_rep	three_prime_UTR	25805954	25806232	.	-	.	Parent=Os02t0642600-01
Chr02	irgsp1_rep	mRNA	25815928	25820856	.	+	.	ID=Os02t0642700-01;Name=Os02t0642700-01;Locus_id=Os02g0642700;Note=Protein of unknown function DUF821%2C CAP10-like family protein.;Transcript_evidence=AK108580 (DDBJ%2C Best hit);ORF_evidence=Q01IH8 (UniProt);InterPro=Lipopolysaccharide-modifying protein (IPR006598),Protein of unknown function DUF821%2C CAP10-like (IPR008539);NIAS_FLcDNA=002-145-H05;Expression=AK108580;TENOR=Os02t0642700-01;KEGG=Os02t0642700-01
Chr02	irgsp1_rep	five_prime_UTR	25815928	25815961	.	+	.	Parent=Os02t0642700-01
Chr02	irgsp1_rep	CDS	25818015	25818622	.	+	0	Parent=Os02t0642700-01
Chr02	irgsp1_rep	CDS	25819033	25819221	.	+	1	Parent=Os02t0642700-01
Chr02	irgsp1_rep	CDS	25819421	25819489	.	+	1	Parent=Os02t0642700-01
Chr02	irgsp1_rep	CDS	25819568	25819778	.	+	1	Parent=Os02t0642700-01
Chr02	irgsp1_rep	CDS	25820372	25820719	.	+	0	Parent=Os02t0642700-01
Chr02	irgsp1_rep	three_prime_UTR	25820720	25820856	.	+	.	Parent=Os02t0642700-01
Chr02	irgsp1_rep	mRNA	25824298	25827123	.	-	.	ID=Os02t0642850-01;Name=Os02t0642850-01;Locus_id=Os02g0642850;Note=Conserved hypothetical protein.;Transcript_evidence=AK288410 (DDBJ%2C Best hit);ORF_evidence=Q10R08 (UniProt);NIAS_FLcDNA=J090030L16;TENOR=Os02t0642850-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	25826115	25827123	.	-	.	Parent=Os02t0642850-01
Chr02	irgsp1_rep	CDS	25825827	25826114	.	-	0	Parent=Os02t0642850-01
Chr02	irgsp1_rep	three_prime_UTR	25824298	25825826	.	-	.	Parent=Os02t0642850-01
Chr02	irgsp1_rep	mRNA	25828426	25831324	.	-	.	ID=Os02t0643000-01;Name=Os02t0643000-01;Locus_id=Os02g0643000;Note=Similar to VAP27.;Transcript_evidence=AK073818 (DDBJ%2C Best hit);ORF_evidence=B6SUF8 (UniProt);GO=Molecular Function: structural molecule activity (GO:0005198);InterPro=Major sperm protein (IPR000535),PapD-like (IPR008962),Vesicle-associated membrane protein (IPR016763);NIAS_FLcDNA=J033068O06;Expression=AK073818;TENOR=Os02t0643000-01;KEGG=Os02t0643000-01
Chr02	irgsp1_rep	five_prime_UTR	25831299	25831324	.	-	.	Parent=Os02t0643000-01
Chr02	irgsp1_rep	CDS	25831139	25831298	.	-	0	Parent=Os02t0643000-01
Chr02	irgsp1_rep	CDS	25830740	25830810	.	-	2	Parent=Os02t0643000-01
Chr02	irgsp1_rep	CDS	25830569	25830650	.	-	0	Parent=Os02t0643000-01
Chr02	irgsp1_rep	CDS	25830363	25830478	.	-	2	Parent=Os02t0643000-01
Chr02	irgsp1_rep	CDS	25830148	25830270	.	-	0	Parent=Os02t0643000-01
Chr02	irgsp1_rep	CDS	25829994	25830035	.	-	0	Parent=Os02t0643000-01
Chr02	irgsp1_rep	CDS	25829292	25829369	.	-	0	Parent=Os02t0643000-01
Chr02	irgsp1_rep	CDS	25828731	25828838	.	-	0	Parent=Os02t0643000-01
Chr02	irgsp1_rep	three_prime_UTR	25828426	25828730	.	-	.	Parent=Os02t0643000-01
Chr02	irgsp1_rep	mRNA	25839537	25842582	.	-	.	ID=Os02t0643200-01;Name=Os02t0643200-01;Locus_id=Os02g0643200;RAP-DB Gene Symbol Synonym(s)=YAB4%2C OsYAB4%2C OsYAB7;RAP-DB Gene Name Synonym(s)=YABBY4%2C YABBY 4%2C OsYABBY4%2C Os YABBY4;CGSNL Gene Symbol=YAB4;CGSNL Gene Name=YABBY4;Oryzabase Gene Symbol Synonym(s)=OsYAB4%2C OsYAB7%2C TOB2;Oryzabase Gene Name Synonym(s)=YABBY 4%2C OsYABBY4%2C Os YABBY4%2C TONGARI-BOUSHI 2%2C TONGARI-BOUSHI2;Note=Transcription factor%2C DNA-binding intermediate protein for SLR1%2C Modulation of gibberellin signaling pathway%2C Regulation of plant growth and development;Transcript_evidence=AK106784,AB274016;ORF_evidence=Q6H668;GO=Biological Process: multicellular organism development (GO:0007275);InterPro=YABBY protein (IPR006780),High mobility group box domain (IPR009071);NIAS_FLcDNA=002-115-H10;Manual Curation=September 8%2C 2016;Literature_PMID=27578842,17216490;Oryzabase=10362;Expression=AK106784;TENOR=Os02t0643200-01;KEGG=Os02t0643200-01
Chr02	irgsp1_rep	five_prime_UTR	25842140	25842582	.	-	.	Parent=Os02t0643200-01
Chr02	irgsp1_rep	CDS	25842026	25842139	.	-	0	Parent=Os02t0643200-01
Chr02	irgsp1_rep	CDS	25841671	25841847	.	-	0	Parent=Os02t0643200-01
Chr02	irgsp1_rep	CDS	25841333	25841519	.	-	0	Parent=Os02t0643200-01
Chr02	irgsp1_rep	CDS	25840793	25840841	.	-	2	Parent=Os02t0643200-01
Chr02	irgsp1_rep	CDS	25840588	25840663	.	-	1	Parent=Os02t0643200-01
Chr02	irgsp1_rep	CDS	25840218	25840289	.	-	0	Parent=Os02t0643200-01
Chr02	irgsp1_rep	CDS	25839921	25840016	.	-	0	Parent=Os02t0643200-01
Chr02	irgsp1_rep	three_prime_UTR	25839537	25839920	.	-	.	Parent=Os02t0643200-01
Chr02	irgsp1_rep	mRNA	25855643	25859028	.	+	.	ID=Os02t0643500-01;Name=Os02t0643500-01;Locus_id=Os02g0643500;Note=Pentapeptide repeat containing protein.;Transcript_evidence=AK068423 (DDBJ%2C Best hit);ORF_evidence=NP_001077523.1 (RefSeq);InterPro=Pentapeptide repeat (IPR001646);NIAS_FLcDNA=J013153L01;Expression=AK068423;TENOR=Os02t0643500-01;KEGG=Os02t0643500-01
Chr02	irgsp1_rep	five_prime_UTR	25855643	25855661	.	+	.	Parent=Os02t0643500-01
Chr02	irgsp1_rep	CDS	25855662	25856002	.	+	0	Parent=Os02t0643500-01
Chr02	irgsp1_rep	CDS	25856093	25856122	.	+	1	Parent=Os02t0643500-01
Chr02	irgsp1_rep	CDS	25856834	25856940	.	+	1	Parent=Os02t0643500-01
Chr02	irgsp1_rep	CDS	25857391	25857425	.	+	2	Parent=Os02t0643500-01
Chr02	irgsp1_rep	CDS	25857817	25857945	.	+	0	Parent=Os02t0643500-01
Chr02	irgsp1_rep	CDS	25858610	25858801	.	+	0	Parent=Os02t0643500-01
Chr02	irgsp1_rep	three_prime_UTR	25858802	25859028	.	+	.	Parent=Os02t0643500-01
Chr02	irgsp1_rep	mRNA	25859185	25860990	.	-	.	ID=Os02t0643600-00;Name=Os02t0643600-00;Locus_id=Os02g0643600;CGSNL Gene Symbol=NAC52;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 52;Oryzabase Gene Symbol Synonym(s)=ONAC052%2C ONAC52;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 052%2C NAC domain-containing protein 52;Note=Similar to H0502G05.5 protein.;Transcript_evidence=BT062913 (DDBJ);ORF_evidence=Q01JG1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);Oryzabase=15838;TENOR=Os02t0643600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	25860984	25860990	.	-	.	Parent=Os02t0643600-00
Chr02	irgsp1_rep	CDS	25860824	25860983	.	-	0	Parent=Os02t0643600-00
Chr02	irgsp1_rep	CDS	25860458	25860729	.	-	2	Parent=Os02t0643600-00
Chr02	irgsp1_rep	CDS	25859504	25860184	.	-	0	Parent=Os02t0643600-00
Chr02	irgsp1_rep	three_prime_UTR	25859185	25859503	.	-	.	Parent=Os02t0643600-00
Chr02	irgsp1_rep	mRNA	25878905	25879875	.	+	.	ID=Os02t0643800-01;Name=Os02t0643800-01;Locus_id=Os02g0643800;CGSNL Gene Symbol=SAUR11;CGSNL Gene Name=SMALL AUXIN-UP RNA 11;Oryzabase Gene Symbol Synonym(s)=OsSAUR11;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 11;Note=Auxin responsive SAUR protein family protein.;Transcript_evidence=AK243422 (DDBJ%2C Best hit);ORF_evidence=NP_001151756.1 (RefSeq);InterPro=Auxin responsive SAUR protein (IPR003676);NIAS_FLcDNA=J100067A09;Oryzabase=9136;TENOR=Os02t0643800-01;KEGG=Os02t0643800-01
Chr02	irgsp1_rep	five_prime_UTR	25878905	25878993	.	+	.	Parent=Os02t0643800-01
Chr02	irgsp1_rep	CDS	25878994	25879566	.	+	0	Parent=Os02t0643800-01
Chr02	irgsp1_rep	three_prime_UTR	25879567	25879875	.	+	.	Parent=Os02t0643800-01
Chr02	irgsp1_rep	mRNA	25885052	25889669	.	+	.	ID=Os02t0643900-00;Name=Os02t0643900-00;Locus_id=Os02g0643900;Note=Gnk2-homologous domain domain containing protein.;Transcript_evidence=BT056023 (DDBJ);ORF_evidence=Q6H663 (UniProt);InterPro=Gnk2-homologous domain (IPR002902);TENOR=Os02t0643900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	25885052	25885775	.	+	0	Parent=Os02t0643900-00
Chr02	irgsp1_rep	CDS	25887576	25887636	.	+	2	Parent=Os02t0643900-00
Chr02	irgsp1_rep	CDS	25889428	25889539	.	+	1	Parent=Os02t0643900-00
Chr02	irgsp1_rep	three_prime_UTR	25889540	25889669	.	+	.	Parent=Os02t0643900-00
Chr02	irgsp1_rep	mRNA	25890445	25900918	.	-	.	ID=Os02t0644000-01;Name=Os02t0644000-01;Locus_id=Os02g0644000;Oryzabase Gene Symbol Synonym(s)=OsVPE3%2C VPE3%2C REP-2%2C REP-2alpha%2C REP-2beta%2C OsaLeg2%2C aLeg2;Oryzabase Gene Name Synonym(s)=vacuolar processing enzyme 3%2C cysteine endopeptidase REP-2%2C legumain 2;Note=Similar to C13 endopeptidase NP1 (Fragment).;Transcript_evidence=AK070079 (DDBJ%2C Best hit);ORF_evidence=Q8GS39 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197);InterPro=Peptidase C13%2C legumain (IPR001096);NIAS_FLcDNA=J023043E22;Oryzabase=10528;Expression=AK070079;TENOR=Os02t0644000-01;KEGG=Os02t0644000-01 (EC:3.4.22.34)
Chr02	irgsp1_rep	five_prime_UTR	25900675	25900918	.	-	.	Parent=Os02t0644000-01
Chr02	irgsp1_rep	CDS	25900588	25900674	.	-	0	Parent=Os02t0644000-01
Chr02	irgsp1_rep	CDS	25893315	25893479	.	-	0	Parent=Os02t0644000-01
Chr02	irgsp1_rep	CDS	25892948	25893104	.	-	0	Parent=Os02t0644000-01
Chr02	irgsp1_rep	CDS	25892782	25892867	.	-	2	Parent=Os02t0644000-01
Chr02	irgsp1_rep	CDS	25892512	25892711	.	-	0	Parent=Os02t0644000-01
Chr02	irgsp1_rep	CDS	25891918	25891966	.	-	1	Parent=Os02t0644000-01
Chr02	irgsp1_rep	CDS	25891637	25891843	.	-	0	Parent=Os02t0644000-01
Chr02	irgsp1_rep	CDS	25890961	25891167	.	-	0	Parent=Os02t0644000-01
Chr02	irgsp1_rep	CDS	25890633	25890815	.	-	0	Parent=Os02t0644000-01
Chr02	irgsp1_rep	three_prime_UTR	25890445	25890632	.	-	.	Parent=Os02t0644000-01
Chr02	irgsp1_rep	mRNA	25890446	25895206	.	-	.	ID=Os02t0644000-02;Name=Os02t0644000-02;Locus_id=Os02g0644000;RAP-DB Gene Symbol Synonym(s)=OsVPE3%2C REP-2;RAP-DB Gene Name Synonym(s)=vacuolar processing enzyme 3;Oryzabase Gene Symbol Synonym(s)=OsVPE3%2C VPE3%2C REP-2%2C REP-2alpha%2C REP-2beta%2C OsaLeg2%2C aLeg2;Oryzabase Gene Name Synonym(s)=vacuolar processing enzyme 3%2C cysteine endopeptidase REP-2%2C legumain 2;Note=Vacuolar processing enzyme%2C Asparaginyl endopeptidase%2C Mediationn of GA-induced programmed cell death in  aleurone layers;Transcript_evidence=AK101360;ORF_evidence=Q8GS39;GO=Biological Process: proteolysis (GO:0006508),Molecular Function: peptidase activity (GO:0008233);InterPro=Peptidase C13%2C legumain (IPR001096);NIAS_FLcDNA=J033035H01;Manual Curation=April 3%2C 2020;Literature_PMID=32232682,12684786;Oryzabase=10528;Expression=AK101360;TENOR=Os02t0644000-02
Chr02	irgsp1_rep	five_prime_UTR	25894998	25895206	.	-	.	Parent=Os02t0644000-02
Chr02	irgsp1_rep	CDS	25894761	25894997	.	-	0	Parent=Os02t0644000-02
Chr02	irgsp1_rep	CDS	25893315	25893479	.	-	0	Parent=Os02t0644000-02
Chr02	irgsp1_rep	CDS	25892948	25893104	.	-	0	Parent=Os02t0644000-02
Chr02	irgsp1_rep	CDS	25892782	25892867	.	-	2	Parent=Os02t0644000-02
Chr02	irgsp1_rep	CDS	25892512	25892711	.	-	0	Parent=Os02t0644000-02
Chr02	irgsp1_rep	CDS	25891918	25891966	.	-	1	Parent=Os02t0644000-02
Chr02	irgsp1_rep	CDS	25891637	25891843	.	-	0	Parent=Os02t0644000-02
Chr02	irgsp1_rep	CDS	25890961	25891167	.	-	0	Parent=Os02t0644000-02
Chr02	irgsp1_rep	CDS	25890633	25890815	.	-	0	Parent=Os02t0644000-02
Chr02	irgsp1_rep	three_prime_UTR	25890446	25890632	.	-	.	Parent=Os02t0644000-02
Chr02	irgsp1_rep	mRNA	25895499	25899872	.	+	.	ID=Os02t0644100-01;Name=Os02t0644100-01;Locus_id=Os02g0644100;CGSNL Gene Symbol=STI1A;CGSNL Gene Name=STRESS-INDUCED PROTEIN 1A;Oryzabase Gene Symbol Synonym(s)=OsHop/Sti1a%2C Hop/Sti1a%2C Sti1a;Oryzabase Gene Name Synonym(s)=stress-induced protein 1a%2C Hop/Sti1 homolog a%2C STI1 homolog a%2C Hsp90 co-chaperone Hop/Sti1a%2C Hsp70-Hsp90 Organizing Protein/stress-induced protein 1a;Note=Similar to Heat shock protein STI (Stress inducible protein) (GmSTI).;Transcript_evidence=AK102431 (DDBJ%2C Best hit);ORF_evidence=Q43468 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide TPR-1 (IPR001440),Heat shock chaperonin-binding (IPR006636),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide TPR2 (IPR013105),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J033093H17;Oryzabase=22663;Expression=AK102431;TENOR=Os02t0644100-01;KEGG=Os02t0644100-01
Chr02	irgsp1_rep	five_prime_UTR	25895499	25895616	.	+	.	Parent=Os02t0644100-01
Chr02	irgsp1_rep	CDS	25895617	25896513	.	+	0	Parent=Os02t0644100-01
Chr02	irgsp1_rep	CDS	25897918	25898206	.	+	0	Parent=Os02t0644100-01
Chr02	irgsp1_rep	CDS	25898371	25898456	.	+	2	Parent=Os02t0644100-01
Chr02	irgsp1_rep	CDS	25898774	25898997	.	+	0	Parent=Os02t0644100-01
Chr02	irgsp1_rep	CDS	25899181	25899247	.	+	1	Parent=Os02t0644100-01
Chr02	irgsp1_rep	CDS	25899337	25899396	.	+	0	Parent=Os02t0644100-01
Chr02	irgsp1_rep	CDS	25899502	25899615	.	+	0	Parent=Os02t0644100-01
Chr02	irgsp1_rep	three_prime_UTR	25899616	25899872	.	+	.	Parent=Os02t0644100-01
Chr02	irgsp1_rep	mRNA	25899499	25899892	.	+	.	ID=Os02t0644100-02;Name=Os02t0644100-02;Locus_id=Os02g0644100;CGSNL Gene Symbol=STI1A;CGSNL Gene Name=STRESS-INDUCED PROTEIN 1A;Oryzabase Gene Symbol Synonym(s)=OsHop/Sti1a%2C Hop/Sti1a%2C Sti1a;Oryzabase Gene Name Synonym(s)=stress-induced protein 1a%2C Hop/Sti1 homolog a%2C STI1 homolog a%2C Hsp90 co-chaperone Hop/Sti1a%2C Hsp70-Hsp90 Organizing Protein/stress-induced protein 1a;Note=Similar to heat shock protein STI.;Transcript_evidence=AK059659 (DDBJ%2C Best hit);ORF_evidence=B6U6S4 (UniProt);NIAS_FLcDNA=001-031-D09;Oryzabase=22663;Expression=AK059659;TENOR=Os02t0644100-02;KEGG=Os02t0644100-02
Chr02	irgsp1_rep	CDS	25899499	25899615	.	+	0	Parent=Os02t0644100-02
Chr02	irgsp1_rep	three_prime_UTR	25899616	25899892	.	+	.	Parent=Os02t0644100-02
Chr02	irgsp1_rep	mRNA	25909942	25910552	.	-	.	ID=Os02t0644200-01;Name=Os02t0644200-01;Locus_id=Os02g0644200;Note=Protein of unknown function DUF125%2C transmembrane family protein.;Transcript_evidence=AK111133 (DDBJ%2C Best hit);ORF_evidence=B7F138 (UniProt);InterPro=Domain of unknown function DUF125%2C transmembrane (IPR008217);NIAS_FLcDNA=002-176-D05;Expression=AK111133;TENOR=Os02t0644200-01;KEGG=Os02t0644200-01
Chr02	irgsp1_rep	five_prime_UTR	25910551	25910552	.	-	.	Parent=Os02t0644200-01
Chr02	irgsp1_rep	CDS	25910164	25910550	.	-	0	Parent=Os02t0644200-01
Chr02	irgsp1_rep	three_prime_UTR	25909942	25910163	.	-	.	Parent=Os02t0644200-01
Chr02	irgsp1_rep	mRNA	25922696	25925807	.	-	.	ID=Os02t0644400-00;Name=Os02t0644400-00;Locus_id=Os02g0644400;Note=Similar to Kinesin heavy chain (Fragment).;Transcript_evidence=ab initio prediction;ORF_evidence=Q93XG3 (UniProt);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752),Protein of unknown function DUF3490 (IPR021881);TENOR=Os02t0644400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	25925677	25925807	.	-	0	Parent=Os02t0644400-00
Chr02	irgsp1_rep	CDS	25924859	25925186	.	-	1	Parent=Os02t0644400-00
Chr02	irgsp1_rep	CDS	25924537	25924638	.	-	0	Parent=Os02t0644400-00
Chr02	irgsp1_rep	CDS	25923745	25924449	.	-	0	Parent=Os02t0644400-00
Chr02	irgsp1_rep	CDS	25923137	25923432	.	-	0	Parent=Os02t0644400-00
Chr02	irgsp1_rep	CDS	25922696	25923026	.	-	1	Parent=Os02t0644400-00
Chr02	irgsp1_rep	mRNA	25922559	25923305	.	+	.	ID=Os02t0644466-00;Name=Os02t0644466-00;Locus_id=Os02g0644466;Note=Hypothetical gene.;Transcript_evidence=EU942367 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0644466-00;KEGG=Os02t0644466-00
Chr02	irgsp1_rep	CDS	25922559	25923056	.	+	0	Parent=Os02t0644466-00
Chr02	irgsp1_rep	three_prime_UTR	25923057	25923305	.	+	.	Parent=Os02t0644466-00
Chr02	irgsp1_rep	mRNA	25912967	25916723	.	-	.	ID=Os02t0644500-01;Name=Os02t0644500-01;Locus_id=Os02g0644500;CGSNL Gene Symbol=ATG13A;CGSNL Gene Name=AUTOPHAGY ASSOCIATED GENE 13A;Oryzabase Gene Symbol Synonym(s)=OsATG13a;Oryzabase Gene Name Synonym(s)=autophagy 13a;Note=Autophagy-related protein 13 domain containing protein.;Transcript_evidence=AK288711 (DDBJ%2C Best hit);ORF_evidence=NP_001173094.1 (RefSeq);InterPro=Autophagy-related protein 13 (IPR018731);NIAS_FLcDNA=J090062C02;Oryzabase=9657;TENOR=Os02t0644500-01;KEGG=Os02t0644500-01
Chr02	irgsp1_rep	five_prime_UTR	25916692	25916723	.	-	.	Parent=Os02t0644500-01
Chr02	irgsp1_rep	CDS	25915540	25916691	.	-	0	Parent=Os02t0644500-01
Chr02	irgsp1_rep	CDS	25914061	25914239	.	-	0	Parent=Os02t0644500-01
Chr02	irgsp1_rep	CDS	25913282	25913585	.	-	1	Parent=Os02t0644500-01
Chr02	irgsp1_rep	three_prime_UTR	25912967	25913281	.	-	.	Parent=Os02t0644500-01
Chr02	irgsp1_rep	mRNA	25941165	25945857	.	+	.	ID=Os02t0644600-01;Name=Os02t0644600-01;Locus_id=Os02g0644600;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK067055 (DDBJ%2C Best hit);ORF_evidence=B8AG06 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013089L19;Expression=AK067055;TENOR=Os02t0644600-01;KEGG=Os02t0644600-01
Chr02	irgsp1_rep	five_prime_UTR	25941165	25941222	.	+	.	Parent=Os02t0644600-01
Chr02	irgsp1_rep	CDS	25941223	25942803	.	+	0	Parent=Os02t0644600-01
Chr02	irgsp1_rep	three_prime_UTR	25942804	25942866	.	+	.	Parent=Os02t0644600-01
Chr02	irgsp1_rep	three_prime_UTR	25943064	25943330	.	+	.	Parent=Os02t0644600-01
Chr02	irgsp1_rep	three_prime_UTR	25943917	25943991	.	+	.	Parent=Os02t0644600-01
Chr02	irgsp1_rep	three_prime_UTR	25944094	25944165	.	+	.	Parent=Os02t0644600-01
Chr02	irgsp1_rep	three_prime_UTR	25944258	25944391	.	+	.	Parent=Os02t0644600-01
Chr02	irgsp1_rep	three_prime_UTR	25945236	25945857	.	+	.	Parent=Os02t0644600-01
Chr02	irgsp1_rep	mRNA	25944665	25945078	.	+	.	ID=Os02t0644650-00;Name=Os02t0644650-00;Locus_id=Os02g0644650;Note=Non-protein coding transcript.;Transcript_evidence=CU406921 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os02t0644650-00
Chr02	irgsp1_rep	exon	25944665	25945078	.	+	.	Parent=Os02t0644650-00
Chr02	irgsp1_rep	mRNA	25946487	25954551	.	-	.	ID=Os02t0644700-01;Name=Os02t0644700-01;Locus_id=Os02g0644700;Note=Similar to Acyl-ACP thioesterase (Fragment).;Transcript_evidence=AK102176 (DDBJ%2C Best hit);ORF_evidence=A1YKG2 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Molecular Function: thiolester hydrolase activity (GO:0016790);InterPro=Acyl-ACP thioesterase (IPR002864),Acyl-ACP-thioesterase%2C N-terminal (IPR021113);NIAS_FLcDNA=J033086L11;Expression=AK102176;TENOR=Os02t0644700-01;KEGG=Os02t0644700-01
Chr02	irgsp1_rep	five_prime_UTR	25953906	25954551	.	-	.	Parent=Os02t0644700-01
Chr02	irgsp1_rep	five_prime_UTR	25951832	25951930	.	-	.	Parent=Os02t0644700-01
Chr02	irgsp1_rep	five_prime_UTR	25951695	25951749	.	-	.	Parent=Os02t0644700-01
Chr02	irgsp1_rep	five_prime_UTR	25951481	25951538	.	-	.	Parent=Os02t0644700-01
Chr02	irgsp1_rep	five_prime_UTR	25951154	25951379	.	-	.	Parent=Os02t0644700-01
Chr02	irgsp1_rep	five_prime_UTR	25950591	25950654	.	-	.	Parent=Os02t0644700-01
Chr02	irgsp1_rep	CDS	25950072	25950590	.	-	0	Parent=Os02t0644700-01
Chr02	irgsp1_rep	CDS	25949835	25949968	.	-	0	Parent=Os02t0644700-01
Chr02	irgsp1_rep	CDS	25947935	25948048	.	-	1	Parent=Os02t0644700-01
Chr02	irgsp1_rep	CDS	25947667	25947796	.	-	1	Parent=Os02t0644700-01
Chr02	irgsp1_rep	three_prime_UTR	25947610	25947666	.	-	.	Parent=Os02t0644700-01
Chr02	irgsp1_rep	three_prime_UTR	25947400	25947468	.	-	.	Parent=Os02t0644700-01
Chr02	irgsp1_rep	three_prime_UTR	25946487	25947024	.	-	.	Parent=Os02t0644700-01
Chr02	irgsp1_rep	mRNA	25957160	25959375	.	-	.	ID=Os02t0644900-01;Name=Os02t0644900-01;Locus_id=Os02g0644900;Oryzabase Gene Symbol Synonym(s)=OsMHX1%2C MHX1%2C OsMHX2%2C MHX2;Oryzabase Gene Name Synonym(s)=Mg2+/H+ exchanger 1%2C magnesium/hydrogen exchanger 1;Note=Sodium/calcium exchanger membrane region domain containing protein.;Transcript_evidence=AK065703 (DDBJ%2C Best hit);ORF_evidence=NP_566105.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Sodium/calcium exchanger membrane region (IPR004837);NIAS_FLcDNA=J013035H08;Oryzabase=15462;Expression=AK065703;TENOR=Os02t0644900-01;KEGG=Os02t0644900-01
Chr02	irgsp1_rep	five_prime_UTR	25959375	25959375	.	-	.	Parent=Os02t0644900-01
Chr02	irgsp1_rep	CDS	25959340	25959374	.	-	0	Parent=Os02t0644900-01
Chr02	irgsp1_rep	CDS	25959077	25959225	.	-	1	Parent=Os02t0644900-01
Chr02	irgsp1_rep	CDS	25958852	25958973	.	-	2	Parent=Os02t0644900-01
Chr02	irgsp1_rep	CDS	25957992	25958208	.	-	0	Parent=Os02t0644900-01
Chr02	irgsp1_rep	CDS	25957741	25957901	.	-	2	Parent=Os02t0644900-01
Chr02	irgsp1_rep	three_prime_UTR	25957160	25957740	.	-	.	Parent=Os02t0644900-01
Chr02	irgsp1_rep	mRNA	25967753	25968734	.	-	.	ID=Os02t0645000-01;Name=Os02t0645000-01;Locus_id=Os02g0645000;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK111136 (DDBJ%2C Best hit);ORF_evidence=NP_001151506.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=002-176-D08;Expression=AK111136;TENOR=Os02t0645000-01;KEGG=Os02t0645000-01
Chr02	irgsp1_rep	five_prime_UTR	25968656	25968734	.	-	.	Parent=Os02t0645000-01
Chr02	irgsp1_rep	CDS	25968062	25968655	.	-	0	Parent=Os02t0645000-01
Chr02	irgsp1_rep	three_prime_UTR	25967753	25968061	.	-	.	Parent=Os02t0645000-01
Chr02	irgsp1_rep	mRNA	25972695	25978867	.	-	.	ID=Os02t0645100-01;Name=Os02t0645100-01;Locus_id=Os02g0645100;Note=Kinesin%2C motor region domain containing protein.;Transcript_evidence=AK242767 (DDBJ%2C Best hit),AK100979 (DDBJ%2C Best hit);ORF_evidence=Q93XG3 (UniProt);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752),Protein of unknown function DUF3490 (IPR021881);NIAS_FLcDNA=J090053D16,J023144I23;TENOR=Os02t0645100-01;KEGG=Os02t0645100-01
Chr02	irgsp1_rep	five_prime_UTR	25978651	25978867	.	-	.	Parent=Os02t0645100-01
Chr02	irgsp1_rep	five_prime_UTR	25978070	25978121	.	-	.	Parent=Os02t0645100-01
Chr02	irgsp1_rep	CDS	25977823	25978069	.	-	0	Parent=Os02t0645100-01
Chr02	irgsp1_rep	CDS	25977170	25977259	.	-	2	Parent=Os02t0645100-01
Chr02	irgsp1_rep	CDS	25976982	25977082	.	-	2	Parent=Os02t0645100-01
Chr02	irgsp1_rep	CDS	25976785	25976898	.	-	0	Parent=Os02t0645100-01
Chr02	irgsp1_rep	CDS	25976617	25976698	.	-	0	Parent=Os02t0645100-01
Chr02	irgsp1_rep	CDS	25976462	25976529	.	-	2	Parent=Os02t0645100-01
Chr02	irgsp1_rep	CDS	25976062	25976127	.	-	0	Parent=Os02t0645100-01
Chr02	irgsp1_rep	CDS	25975844	25975968	.	-	0	Parent=Os02t0645100-01
Chr02	irgsp1_rep	CDS	25975026	25975353	.	-	1	Parent=Os02t0645100-01
Chr02	irgsp1_rep	CDS	25974704	25974805	.	-	0	Parent=Os02t0645100-01
Chr02	irgsp1_rep	CDS	25973912	25974616	.	-	0	Parent=Os02t0645100-01
Chr02	irgsp1_rep	CDS	25973304	25973599	.	-	0	Parent=Os02t0645100-01
Chr02	irgsp1_rep	CDS	25972863	25973193	.	-	1	Parent=Os02t0645100-01
Chr02	irgsp1_rep	three_prime_UTR	25972695	25972862	.	-	.	Parent=Os02t0645100-01
Chr02	irgsp1_rep	mRNA	25972726	25973472	.	+	.	ID=Os02t0645266-00;Name=Os02t0645266-00;Locus_id=Os02g0645266;Note=Hypothetical gene.;Transcript_evidence=EU942367 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0645266-00;KEGG=Os02t0645266-00
Chr02	irgsp1_rep	CDS	25972726	25973223	.	+	0	Parent=Os02t0645266-00
Chr02	irgsp1_rep	three_prime_UTR	25973224	25973472	.	+	.	Parent=Os02t0645266-00
Chr02	irgsp1_rep	mRNA	25996987	25998747	.	+	.	ID=Os02t0645600-01;Name=Os02t0645600-01;Locus_id=Os02g0645600;CGSNL Gene Symbol=GATA2;CGSNL Gene Name=GATA TRANSCRIPTION FACTOR 2;Oryzabase Gene Symbol Synonym(s)=OsGATA2%2C OsGATA2a%2C OsGATA2b;Oryzabase Gene Name Synonym(s)=GATA transcription factor 2%2C GATA factor 2;Note=Similar to AG-motif binding protein-3.;Transcript_evidence=AK109477 (DDBJ%2C Best hit);ORF_evidence=NP_001150502.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: positive regulation of transcription%2C DNA-dependent (GO:0045893),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Zinc finger%2C GATA-type (IPR000679),Zinc finger%2C NHR/GATA-type (IPR013088),Transcription factor%2C GATA%2C plant (IPR016679);NIAS_FLcDNA=001-200-C09;Oryzabase=20487;Expression=AK109477;TENOR=Os02t0645600-01;KEGG=Os02t0645600-01
Chr02	irgsp1_rep	five_prime_UTR	25996987	25997084	.	+	.	Parent=Os02t0645600-01
Chr02	irgsp1_rep	CDS	25997085	25997120	.	+	0	Parent=Os02t0645600-01
Chr02	irgsp1_rep	CDS	25997241	25997573	.	+	0	Parent=Os02t0645600-01
Chr02	irgsp1_rep	CDS	25997691	25998485	.	+	0	Parent=Os02t0645600-01
Chr02	irgsp1_rep	three_prime_UTR	25998486	25998747	.	+	.	Parent=Os02t0645600-01
Chr02	irgsp1_rep	mRNA	25997789	25998476	.	-	.	ID=Os02t0645725-00;Name=Os02t0645725-00;Locus_id=Os02g0645725;Note=Hypothetical protein.;Transcript_evidence=FP100733 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0645725-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	25998168	25998476	.	-	0	Parent=Os02t0645725-00
Chr02	irgsp1_rep	CDS	25997789	25998062	.	-	0	Parent=Os02t0645725-00
Chr02	irgsp1_rep	mRNA	26027785	26029488	.	+	.	ID=Os02t0646200-01;Name=Os02t0646200-01;Locus_id=Os02g0646200;Oryzabase Gene Symbol Synonym(s)=OsBBX6%2C BBX6;Oryzabase Gene Name Synonym(s)=B-box-containing protein 6;Note=Zinc finger%2C B-box domain containing protein.;Transcript_evidence=AK071507 (DDBJ%2C Best hit);ORF_evidence=Q01IP9 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C B-box (IPR000315);NIAS_FLcDNA=J023090D24;Oryzabase=11637;Expression=AK071507;TENOR=Os02t0646200-01;KEGG=Os02t0646200-01
Chr02	irgsp1_rep	five_prime_UTR	26027785	26027954	.	+	.	Parent=Os02t0646200-01
Chr02	irgsp1_rep	CDS	26027955	26028161	.	+	0	Parent=Os02t0646200-01
Chr02	irgsp1_rep	CDS	26028261	26028656	.	+	0	Parent=Os02t0646200-01
Chr02	irgsp1_rep	CDS	26029064	26029270	.	+	0	Parent=Os02t0646200-01
Chr02	irgsp1_rep	three_prime_UTR	26029271	26029488	.	+	.	Parent=Os02t0646200-01
Chr02	irgsp1_rep	mRNA	26031530	26033900	.	+	.	ID=Os02t0646400-01;Name=Os02t0646400-01;Locus_id=Os02g0646400;CGSNL Gene Symbol=GRX10;CGSNL Gene Name=GLUTAREDOXIN 10;Oryzabase Gene Symbol Synonym(s)=OsGRX10;Oryzabase Gene Name Synonym(s)=glutaredoxin 10;Note=Similar to Glutaredoxin.;Transcript_evidence=AK067828 (DDBJ%2C Best hit);ORF_evidence=Q6H628 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin (IPR002109),Glutaredoxin%2C eukaryotic/virial (IPR011899),Thioredoxin-like fold (IPR012336),Glutaredoxin subgroup (IPR014025);NIAS_FLcDNA=J013120N01;Oryzabase=13586;Expression=AK067828;TENOR=Os02t0646400-01;KEGG=Os02t0646400-01
Chr02	irgsp1_rep	five_prime_UTR	26031530	26031599	.	+	.	Parent=Os02t0646400-01
Chr02	irgsp1_rep	CDS	26031600	26031754	.	+	0	Parent=Os02t0646400-01
Chr02	irgsp1_rep	CDS	26033161	26033234	.	+	1	Parent=Os02t0646400-01
Chr02	irgsp1_rep	CDS	26033326	26033424	.	+	2	Parent=Os02t0646400-01
Chr02	irgsp1_rep	CDS	26033510	26033577	.	+	2	Parent=Os02t0646400-01
Chr02	irgsp1_rep	three_prime_UTR	26033578	26033900	.	+	.	Parent=Os02t0646400-01
Chr02	irgsp1_rep	mRNA	26034336	26041422	.	-	.	ID=Os02t0646500-01;Name=Os02t0646500-01;Locus_id=Os02g0646500;CGSNL Gene Symbol=ALDH3E1;CGSNL Gene Name=ALDEHYDE DEHYDROGENASE 3E1;Oryzabase Gene Symbol Synonym(s)=OS-ALDH%2C OsALDH3E1;Oryzabase Gene Name Synonym(s)=aldehyde dehydrogenase%2C Aldehyde Dehydrogenase-Like Protein%2C aldehyde dehydrogenase 3E1;Note=Aldehyde dehydrogenase domain containing protein.;Transcript_evidence=AK070741 (DDBJ%2C Best hit);ORF_evidence=B9F1D1 (UniProt);GO=Biological Process: cellular aldehyde metabolic process (GO:0006081),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: aldehyde dehydrogenase [NAD(P)+] activity (GO:0004030),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620);InterPro=Aldehyde dehydrogenase NAD(P)-dependent (IPR012394),Aldehyde dehydrogenase domain (IPR015590),Aldehyde/histidinol dehydrogenase (IPR016161),Aldehyde dehydrogenase%2C N-terminal (IPR016162),Aldehyde dehydrogenase%2C C-terminal (IPR016163);NIAS_FLcDNA=J023063H05;Oryzabase=13668;Expression=AK070741;TENOR=Os02t0646500-01;KEGG=Os02t0646500-01
Chr02	irgsp1_rep	five_prime_UTR	26041267	26041422	.	-	.	Parent=Os02t0646500-01
Chr02	irgsp1_rep	CDS	26041060	26041266	.	-	0	Parent=Os02t0646500-01
Chr02	irgsp1_rep	CDS	26040875	26040944	.	-	0	Parent=Os02t0646500-01
Chr02	irgsp1_rep	CDS	26040195	26040290	.	-	2	Parent=Os02t0646500-01
Chr02	irgsp1_rep	CDS	26038187	26038393	.	-	2	Parent=Os02t0646500-01
Chr02	irgsp1_rep	CDS	26037962	26038086	.	-	2	Parent=Os02t0646500-01
Chr02	irgsp1_rep	CDS	26037748	26037852	.	-	0	Parent=Os02t0646500-01
Chr02	irgsp1_rep	CDS	26037342	26037502	.	-	0	Parent=Os02t0646500-01
Chr02	irgsp1_rep	CDS	26037164	26037254	.	-	1	Parent=Os02t0646500-01
Chr02	irgsp1_rep	CDS	26036922	26037071	.	-	0	Parent=Os02t0646500-01
Chr02	irgsp1_rep	CDS	26034562	26034813	.	-	0	Parent=Os02t0646500-01
Chr02	irgsp1_rep	three_prime_UTR	26034336	26034561	.	-	.	Parent=Os02t0646500-01
Chr02	irgsp1_rep	mRNA	26034588	26041226	.	+	.	ID=Os02t0646700-00;Name=Os02t0646700-00;Locus_id=Os02g0646700;Note=Hypothetical protein.;Transcript_evidence=tplb0048o11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0646700-00
Chr02	irgsp1_rep	five_prime_UTR	26034588	26034813	.	+	.	Parent=Os02t0646700-00
Chr02	irgsp1_rep	five_prime_UTR	26036922	26037088	.	+	.	Parent=Os02t0646700-00
Chr02	irgsp1_rep	five_prime_UTR	26037182	26037239	.	+	.	Parent=Os02t0646700-00
Chr02	irgsp1_rep	five_prime_UTR	26037323	26037440	.	+	.	Parent=Os02t0646700-00
Chr02	irgsp1_rep	CDS	26037441	26037495	.	+	0	Parent=Os02t0646700-00
Chr02	irgsp1_rep	CDS	26037737	26037849	.	+	2	Parent=Os02t0646700-00
Chr02	irgsp1_rep	CDS	26037959	26038082	.	+	0	Parent=Os02t0646700-00
Chr02	irgsp1_rep	CDS	26038183	26038316	.	+	2	Parent=Os02t0646700-00
Chr02	irgsp1_rep	three_prime_UTR	26038317	26038401	.	+	.	Parent=Os02t0646700-00
Chr02	irgsp1_rep	three_prime_UTR	26040205	26040325	.	+	.	Parent=Os02t0646700-00
Chr02	irgsp1_rep	three_prime_UTR	26041024	26041226	.	+	.	Parent=Os02t0646700-00
Chr02	irgsp1_rep	mRNA	26052820	26054164	.	-	.	ID=Os02t0647300-01;Name=Os02t0647300-01;Locus_id=Os02g0647300;Note=Leucine-rich repeat%2C plant specific containing protein.;Transcript_evidence=AK109613 (DDBJ%2C Best hit);ORF_evidence=B8AG12 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=002-137-G09;Expression=AK109613;TENOR=Os02t0647300-01;KEGG=Os02t0647300-01
Chr02	irgsp1_rep	CDS	26052842	26054164	.	-	0	Parent=Os02t0647300-01
Chr02	irgsp1_rep	three_prime_UTR	26052820	26052841	.	-	.	Parent=Os02t0647300-01
Chr02	irgsp1_rep	mRNA	26079797	26085467	.	+	.	ID=Os02t0647900-01;Name=Os02t0647900-01;Locus_id=Os02g0647900;CGSNL Gene Symbol=ALDH3E2;CGSNL Gene Name=ALDEHYDE DEHYDROGENASE 3E2;Oryzabase Gene Symbol Synonym(s)=OsALDH3E2;Oryzabase Gene Name Synonym(s)=Aldehyde dehydrogenase 3E2;Note=Similar to Fatty aldehyde dehydrogenase 1.;Transcript_evidence=AK120274 (DDBJ%2C Best hit),AK060824 (DDBJ%2C Best hit);ORF_evidence=B8AG13 (UniProt);GO=Biological Process: cellular aldehyde metabolic process (GO:0006081),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: aldehyde dehydrogenase [NAD(P)+] activity (GO:0004030),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620);InterPro=Aldehyde dehydrogenase NAD(P)-dependent (IPR012394),Aldehyde dehydrogenase domain (IPR015590),Aldehyde/histidinol dehydrogenase (IPR016161),Aldehyde dehydrogenase%2C N-terminal (IPR016162),Aldehyde dehydrogenase%2C C-terminal (IPR016163);NIAS_FLcDNA=J013048F01,001-034-B04;Oryzabase=22112;Expression=AK120274;TENOR=Os02t0647900-01;KEGG=Os02t0647900-01
Chr02	irgsp1_rep	five_prime_UTR	26079797	26079941	.	+	.	Parent=Os02t0647900-01
Chr02	irgsp1_rep	CDS	26079942	26080175	.	+	0	Parent=Os02t0647900-01
Chr02	irgsp1_rep	CDS	26080295	26080363	.	+	0	Parent=Os02t0647900-01
Chr02	irgsp1_rep	CDS	26080470	26080566	.	+	0	Parent=Os02t0647900-01
Chr02	irgsp1_rep	CDS	26083479	26083685	.	+	2	Parent=Os02t0647900-01
Chr02	irgsp1_rep	CDS	26083818	26083942	.	+	2	Parent=Os02t0647900-01
Chr02	irgsp1_rep	CDS	26084039	26084143	.	+	0	Parent=Os02t0647900-01
Chr02	irgsp1_rep	CDS	26084247	26084407	.	+	0	Parent=Os02t0647900-01
Chr02	irgsp1_rep	CDS	26084484	26084574	.	+	1	Parent=Os02t0647900-01
Chr02	irgsp1_rep	CDS	26084668	26084817	.	+	0	Parent=Os02t0647900-01
Chr02	irgsp1_rep	CDS	26084903	26085139	.	+	0	Parent=Os02t0647900-01
Chr02	irgsp1_rep	three_prime_UTR	26085140	26085467	.	+	.	Parent=Os02t0647900-01
Chr02	irgsp1_rep	mRNA	26080539	26085349	.	+	.	ID=Os02t0647900-02;Name=Os02t0647900-02;Locus_id=Os02g0647900;CGSNL Gene Symbol=ALDH3E2;CGSNL Gene Name=ALDEHYDE DEHYDROGENASE 3E2;Oryzabase Gene Symbol Synonym(s)=OsALDH3E2;Oryzabase Gene Name Synonym(s)=Aldehyde dehydrogenase 3E2;Note=Similar to aldehyde dehydrogenase 3B1.;Transcript_evidence=AK099790 (DDBJ%2C Best hit);ORF_evidence=B8AG13 (UniProt);GO=Biological Process: cellular aldehyde metabolic process (GO:0006081),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: aldehyde dehydrogenase [NAD(P)+] activity (GO:0004030),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620);InterPro=Aldehyde dehydrogenase NAD(P)-dependent (IPR012394),Aldehyde dehydrogenase domain (IPR015590),Aldehyde/histidinol dehydrogenase (IPR016161),Aldehyde dehydrogenase%2C N-terminal (IPR016162),Aldehyde dehydrogenase%2C C-terminal (IPR016163);NIAS_FLcDNA=J013097B22;Oryzabase=22112;Expression=AK099790;TENOR=Os02t0647900-02;KEGG=Os02t0647900-02 (EC:1.2.1.5)
Chr02	irgsp1_rep	CDS	26080539	26080566	.	+	0	Parent=Os02t0647900-02
Chr02	irgsp1_rep	CDS	26083479	26083685	.	+	2	Parent=Os02t0647900-02
Chr02	irgsp1_rep	CDS	26083818	26083942	.	+	2	Parent=Os02t0647900-02
Chr02	irgsp1_rep	CDS	26084039	26084143	.	+	0	Parent=Os02t0647900-02
Chr02	irgsp1_rep	CDS	26084247	26084407	.	+	0	Parent=Os02t0647900-02
Chr02	irgsp1_rep	CDS	26084484	26084574	.	+	1	Parent=Os02t0647900-02
Chr02	irgsp1_rep	CDS	26084668	26084817	.	+	0	Parent=Os02t0647900-02
Chr02	irgsp1_rep	CDS	26084903	26085139	.	+	0	Parent=Os02t0647900-02
Chr02	irgsp1_rep	three_prime_UTR	26085140	26085349	.	+	.	Parent=Os02t0647900-02
Chr02	irgsp1_rep	mRNA	26080023	26085204	.	-	.	ID=Os02t0647950-00;Name=Os02t0647950-00;Locus_id=Os02g0647950;Note=Hypothetical protein.;Transcript_evidence=tplb0048o11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0647950-00
Chr02	irgsp1_rep	five_prime_UTR	26084901	26085204	.	-	.	Parent=Os02t0647950-00
Chr02	irgsp1_rep	five_prime_UTR	26084646	26084815	.	-	.	Parent=Os02t0647950-00
Chr02	irgsp1_rep	five_prime_UTR	26084499	26084559	.	-	.	Parent=Os02t0647950-00
Chr02	irgsp1_rep	five_prime_UTR	26084246	26084422	.	-	.	Parent=Os02t0647950-00
Chr02	irgsp1_rep	five_prime_UTR	26084051	26084142	.	-	.	Parent=Os02t0647950-00
Chr02	irgsp1_rep	five_prime_UTR	26083836	26083950	.	-	.	Parent=Os02t0647950-00
Chr02	irgsp1_rep	five_prime_UTR	26083702	26083704	.	-	.	Parent=Os02t0647950-00
Chr02	irgsp1_rep	CDS	26083466	26083701	.	-	0	Parent=Os02t0647950-00
Chr02	irgsp1_rep	CDS	26080468	26080556	.	-	1	Parent=Os02t0647950-00
Chr02	irgsp1_rep	CDS	26080296	26080361	.	-	2	Parent=Os02t0647950-00
Chr02	irgsp1_rep	CDS	26080096	26080175	.	-	2	Parent=Os02t0647950-00
Chr02	irgsp1_rep	three_prime_UTR	26080023	26080095	.	-	.	Parent=Os02t0647950-00
Chr02	irgsp1_rep	mRNA	26080567	26082244	.	+	.	ID=Os02t0648000-01;Name=Os02t0648000-01;Locus_id=Os02g0648000;Note=Non-protein coding transcript.;Transcript_evidence=AK066050 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013050F13;TENOR=Os02t0648000-01
Chr02	irgsp1_rep	exon	26080567	26082244	.	+	.	Parent=Os02t0648000-01
Chr02	irgsp1_rep	mRNA	26090437	26091873	.	-	.	ID=Os02t0648100-01;Name=Os02t0648100-01;Locus_id=Os02g0648100;CGSNL Gene Symbol=RLCK79;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 79;Oryzabase Gene Symbol Synonym(s)=OsRLCK79;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 79;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK111267 (DDBJ%2C Best hit);ORF_evidence=NP_001149562.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-180-F08;Oryzabase=18791;Expression=AK111267;TENOR=Os02t0648100-01;KEGG=Os02t0648100-01
Chr02	irgsp1_rep	five_prime_UTR	26091866	26091873	.	-	.	Parent=Os02t0648100-01
Chr02	irgsp1_rep	CDS	26091469	26091865	.	-	0	Parent=Os02t0648100-01
Chr02	irgsp1_rep	CDS	26090659	26091359	.	-	2	Parent=Os02t0648100-01
Chr02	irgsp1_rep	three_prime_UTR	26090437	26090658	.	-	.	Parent=Os02t0648100-01
Chr02	irgsp1_rep	mRNA	26091070	26091651	.	+	.	ID=Os02t0648200-00;Name=Os02t0648200-00;Locus_id=Os02g0648200;Note=Non-protein coding transcript.;Transcript_evidence=EU951884 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0648200-00
Chr02	irgsp1_rep	exon	26091070	26091312	.	+	.	Parent=Os02t0648200-00
Chr02	irgsp1_rep	exon	26091432	26091651	.	+	.	Parent=Os02t0648200-00
Chr02	irgsp1_rep	mRNA	26099326	26101023	.	-	.	ID=Os02t0648300-01;Name=Os02t0648300-01;Locus_id=Os02g0648300;CGSNL Gene Symbol=MSL15;CGSNL Gene Name=MYB/SANT-LIKE 15;Oryzabase Gene Symbol Synonym(s)=OsMSL15;Oryzabase Gene Name Synonym(s)=Myb/SANT-LIKE 15;Note=SANT domain%2C DNA binding domain containing protein.;Transcript_evidence=AK111742 (DDBJ%2C Best hit);ORF_evidence=Q6H6S9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-related (IPR012287),MYB-like (IPR017877);NIAS_FLcDNA=J023050K14;Oryzabase=22956;TENOR=Os02t0648300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	26100907	26101023	.	-	.	Parent=Os02t0648300-01
Chr02	irgsp1_rep	CDS	26099827	26100906	.	-	0	Parent=Os02t0648300-01
Chr02	irgsp1_rep	CDS	26099505	26099750	.	-	0	Parent=Os02t0648300-01
Chr02	irgsp1_rep	three_prime_UTR	26099326	26099504	.	-	.	Parent=Os02t0648300-01
Chr02	irgsp1_rep	mRNA	26126107	26127159	.	+	.	ID=Os02t0648900-01;Name=Os02t0648900-01;Locus_id=Os02g0648900;Note=Hypothetical protein.;Transcript_evidence=AK107035 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-121-B08;Expression=AK107035;TENOR=Os02t0648900-01;KEGG=Os02t0648900-01
Chr02	irgsp1_rep	five_prime_UTR	26126107	26126395	.	+	.	Parent=Os02t0648900-01
Chr02	irgsp1_rep	CDS	26126396	26126809	.	+	0	Parent=Os02t0648900-01
Chr02	irgsp1_rep	three_prime_UTR	26126810	26127159	.	+	.	Parent=Os02t0648900-01
Chr02	irgsp1_rep	mRNA	26131342	26132296	.	+	.	ID=Os02t0649000-01;Name=Os02t0649000-01;Locus_id=Os02g0649000;Note=Non-protein coding transcript.;Transcript_evidence=AK062294 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-100-F02;TENOR=Os02t0649000-01
Chr02	irgsp1_rep	exon	26131342	26132296	.	+	.	Parent=Os02t0649000-01
Chr02	irgsp1_rep	mRNA	26143311	26144729	.	+	.	ID=Os02t0649300-01;Name=Os02t0649300-01;Locus_id=Os02g0649300;RAP-DB Gene Symbol Synonym(s)=HOX24%2C Oshox24%2C OsHox24%2C OsSLI1;RAP-DB Gene Name Synonym(s)=HOMEOBOX GENE 24%2C rice homeobox gene 24%2C Homeobox-leucine zipper protein HOX24%2C Homeodomain transcription factor HOX24%2C HD-ZIP protein HOX24%2C stress largely induced 1;CGSNL Gene Symbol=HOX24;CGSNL Gene Name=HOMEOBOX GENE 24;Oryzabase Gene Symbol Synonym(s)=Oshox24%2C OsHox24%2C OsSLI1;Oryzabase Gene Name Synonym(s)=rice homeobox gene 24%2C Homeobox-leucine zipper protein HOX24%2C Homeodomain transcription factor HOX24%2C HD-ZIP protein HOX24%2C stress largely induced 1;Note=HD-ZIP I protein%2C Transcription activator%2C Stress response%2C Panicle development;Transcript_evidence=AK063685;ORF_evidence=Q6H6S3;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeodomain-like (IPR009057),Homeobox domain (IPR001356),Leucine zipper%2C homeobox-associated (IPR003106),Helix-turn-helix motif (IPR000047),Homeobox%2C conserved site (IPR017970);NIAS_FLcDNA=001-119-F01;Manual Curation=July 9%2C 2015;Literature_PMID=25089296,17999151;Oryzabase=8461;TENOR=Os02t0649300-01
Chr02	irgsp1_rep	five_prime_UTR	26143311	26143410	.	+	.	Parent=Os02t0649300-01
Chr02	irgsp1_rep	CDS	26143411	26143869	.	+	0	Parent=Os02t0649300-01
Chr02	irgsp1_rep	CDS	26143957	26144283	.	+	0	Parent=Os02t0649300-01
Chr02	irgsp1_rep	three_prime_UTR	26144284	26144729	.	+	.	Parent=Os02t0649300-01
Chr02	irgsp1_rep	mRNA	26150920	26151389	.	-	.	ID=Os02t0649400-00;Name=Os02t0649400-00;Locus_id=Os02g0649400;Note=Similar to predicted protein.;Transcript_evidence=CT835422 (DDBJ%2C Best hit);ORF_evidence=Q40863 (UniProt);TENOR=Os02t0649400-00
Chr02	irgsp1_rep	five_prime_UTR	26151339	26151389	.	-	.	Parent=Os02t0649400-00
Chr02	irgsp1_rep	CDS	26150920	26151338	.	-	0	Parent=Os02t0649400-00
Chr02	irgsp1_rep	mRNA	26156276	26162430	.	+	.	ID=Os02t0649700-01;Name=Os02t0649700-01;Locus_id=Os02g0649700;CGSNL Gene Symbol=FTSH7;Oryzabase Gene Symbol Synonym(s)=OsFtsH7%2C FtsH7;Note=ATPase%2C AAA-type%2C core domain containing protein.;Transcript_evidence=AK069509 (DDBJ%2C Best hit);ORF_evidence=Q6H6R9 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: protein catabolic process (GO:0030163),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: ATP binding (GO:0005524),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=Peptidase M41 (IPR000642),ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960),Peptidase M41%2C FtsH (IPR005936),Peptidase M41%2C FtsH extracellular (IPR011546);NIAS_FLcDNA=J023020K03;Oryzabase=21259;Expression=AK069509;TENOR=Os02t0649700-01;KEGG=Os02t0649700-01 (EC:3.4.24.-)
Chr02	irgsp1_rep	five_prime_UTR	26156276	26156471	.	+	.	Parent=Os02t0649700-01
Chr02	irgsp1_rep	CDS	26156472	26157356	.	+	0	Parent=Os02t0649700-01
Chr02	irgsp1_rep	CDS	26158472	26158537	.	+	0	Parent=Os02t0649700-01
Chr02	irgsp1_rep	CDS	26158631	26158765	.	+	0	Parent=Os02t0649700-01
Chr02	irgsp1_rep	CDS	26158876	26158941	.	+	0	Parent=Os02t0649700-01
Chr02	irgsp1_rep	CDS	26159023	26159208	.	+	0	Parent=Os02t0649700-01
Chr02	irgsp1_rep	CDS	26159284	26159370	.	+	0	Parent=Os02t0649700-01
Chr02	irgsp1_rep	CDS	26159492	26159605	.	+	0	Parent=Os02t0649700-01
Chr02	irgsp1_rep	CDS	26159681	26159805	.	+	0	Parent=Os02t0649700-01
Chr02	irgsp1_rep	CDS	26159882	26159990	.	+	1	Parent=Os02t0649700-01
Chr02	irgsp1_rep	CDS	26160805	26160930	.	+	0	Parent=Os02t0649700-01
Chr02	irgsp1_rep	CDS	26161018	26161338	.	+	0	Parent=Os02t0649700-01
Chr02	irgsp1_rep	CDS	26161653	26161776	.	+	0	Parent=Os02t0649700-01
Chr02	irgsp1_rep	CDS	26161912	26162036	.	+	2	Parent=Os02t0649700-01
Chr02	irgsp1_rep	three_prime_UTR	26162037	26162430	.	+	.	Parent=Os02t0649700-01
Chr02	irgsp1_rep	mRNA	26157201	26162425	.	+	.	ID=Os02t0649700-02;Name=Os02t0649700-02;Locus_id=Os02g0649700;CGSNL Gene Symbol=FTSH7;Oryzabase Gene Symbol Synonym(s)=OsFtsH7%2C FtsH7;Note=Similar to Cell division protease ftsH homolog 7%2C chloroplastic.;Transcript_evidence=AK058221 (DDBJ%2C Best hit);ORF_evidence=Q6H6R9 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);NIAS_FLcDNA=001-010-G01;Oryzabase=21259;Expression=AK058221;TENOR=Os02t0649700-02;KEGG=Os02t0649700-02 (EC:3.4.24.-)
Chr02	irgsp1_rep	CDS	26157201	26157356	.	+	0	Parent=Os02t0649700-02
Chr02	irgsp1_rep	CDS	26158472	26158537	.	+	0	Parent=Os02t0649700-02
Chr02	irgsp1_rep	CDS	26158631	26158765	.	+	0	Parent=Os02t0649700-02
Chr02	irgsp1_rep	CDS	26158876	26158941	.	+	0	Parent=Os02t0649700-02
Chr02	irgsp1_rep	CDS	26159023	26159208	.	+	0	Parent=Os02t0649700-02
Chr02	irgsp1_rep	CDS	26159284	26159370	.	+	0	Parent=Os02t0649700-02
Chr02	irgsp1_rep	CDS	26159492	26159605	.	+	0	Parent=Os02t0649700-02
Chr02	irgsp1_rep	CDS	26159681	26159760	.	+	0	Parent=Os02t0649700-02
Chr02	irgsp1_rep	CDS	26162074	26162188	.	+	1	Parent=Os02t0649700-02
Chr02	irgsp1_rep	three_prime_UTR	26162189	26162425	.	+	.	Parent=Os02t0649700-02
Chr02	irgsp1_rep	mRNA	26156309	26162419	.	-	.	ID=Os02t0649750-00;Name=Os02t0649750-00;Locus_id=Os02g0649750;Note=Hypothetical protein.;Transcript_evidence=tplb0024a22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0649750-00
Chr02	irgsp1_rep	five_prime_UTR	26161910	26162419	.	-	.	Parent=Os02t0649750-00
Chr02	irgsp1_rep	five_prime_UTR	26161651	26161774	.	-	.	Parent=Os02t0649750-00
Chr02	irgsp1_rep	five_prime_UTR	26161016	26161340	.	-	.	Parent=Os02t0649750-00
Chr02	irgsp1_rep	five_prime_UTR	26160805	26160928	.	-	.	Parent=Os02t0649750-00
Chr02	irgsp1_rep	five_prime_UTR	26159880	26159990	.	-	.	Parent=Os02t0649750-00
Chr02	irgsp1_rep	five_prime_UTR	26159696	26159801	.	-	.	Parent=Os02t0649750-00
Chr02	irgsp1_rep	five_prime_UTR	26159488	26159618	.	-	.	Parent=Os02t0649750-00
Chr02	irgsp1_rep	five_prime_UTR	26159265	26159364	.	-	.	Parent=Os02t0649750-00
Chr02	irgsp1_rep	five_prime_UTR	26159021	26159185	.	-	.	Parent=Os02t0649750-00
Chr02	irgsp1_rep	five_prime_UTR	26158875	26158934	.	-	.	Parent=Os02t0649750-00
Chr02	irgsp1_rep	five_prime_UTR	26158627	26158764	.	-	.	Parent=Os02t0649750-00
Chr02	irgsp1_rep	five_prime_UTR	26158450	26158533	.	-	.	Parent=Os02t0649750-00
Chr02	irgsp1_rep	five_prime_UTR	26156933	26157337	.	-	.	Parent=Os02t0649750-00
Chr02	irgsp1_rep	CDS	26156348	26156932	.	-	0	Parent=Os02t0649750-00
Chr02	irgsp1_rep	three_prime_UTR	26156309	26156347	.	-	.	Parent=Os02t0649750-00
Chr02	irgsp1_rep	mRNA	26163137	26164221	.	-	.	ID=Os02t0649800-01;Name=Os02t0649800-01;Locus_id=Os02g0649800;Note=Similar to CytoChrome B5 homolog (Fragment).;Transcript_evidence=AK066861 (DDBJ%2C Best hit);ORF_evidence=B6SLW8 (UniProt);GO=Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome b5 (IPR001199),CytoChrome b5%2C heme-binding site (IPR018506);NIAS_FLcDNA=J013079M22;Expression=AK066861;TENOR=Os02t0649800-01;KEGG=Os02t0649800-01
Chr02	irgsp1_rep	five_prime_UTR	26163986	26164221	.	-	.	Parent=Os02t0649800-01
Chr02	irgsp1_rep	CDS	26163899	26163985	.	-	0	Parent=Os02t0649800-01
Chr02	irgsp1_rep	CDS	26163679	26163745	.	-	0	Parent=Os02t0649800-01
Chr02	irgsp1_rep	CDS	26163300	26163562	.	-	2	Parent=Os02t0649800-01
Chr02	irgsp1_rep	three_prime_UTR	26163137	26163299	.	-	.	Parent=Os02t0649800-01
Chr02	irgsp1_rep	mRNA	26171617	26174918	.	-	.	ID=Os02t0649900-01;Name=Os02t0649900-01;Locus_id=Os02g0649900;RAP-DB Gene Symbol Synonym(s)=YSL2%2C OsYSL2%2C Os-YSL2%2C OsYs6;RAP-DB Gene Name Synonym(s)=YELLOW STRIP-LIKE GENE 2%2C rice YSL (yellow stripe-like) gene2%2C Metal-nicotianamine transporter YSL2%2C Protein YELLOW STRIPE LIKE 2%2C ferrous Fe- and Mn-NA transporter OsYSL2%2C yellow stripe 1-like transporter 2;CGSNL Gene Symbol=YSL2;CGSNL Gene Name=YELLOW STRIP-LIKE GENE 2;Oryzabase Gene Symbol Synonym(s)=OsYSL2%2C Os-YSL2%2C OsYs6;Oryzabase Gene Name Synonym(s)=rice YSL (yellow stripe-like) gene2%2C Metal-nicotianamine transporter YSL2%2C Protein YELLOW STRIPE LIKE 2%2C ferrous Fe- and Mn-NA transporter OsYSL2%2C yellow stripe 1-like transporter 2;Note=Metal-nicotianamine (NA) transporter%2C Fe and Mn transport to the endosperm;Transcript_evidence=AB126253,AB164646;ORF_evidence=Q6H3Z6;GO=Biological Process: transmembrane transport (GO:0055085);InterPro=Oligopeptide transporter%2C OPT superfamily (IPR004813);Manual Curation=December 21%2C 2009;Literature_PMID=15255870,19737364,20128878;Oryzabase=3126;TENOR=Os02t0649900-00
Chr02	irgsp1_rep	CDS	26174534	26174918	.	-	0	Parent=Os02t0649900-01
Chr02	irgsp1_rep	CDS	26174254	26174426	.	-	2	Parent=Os02t0649900-01
Chr02	irgsp1_rep	CDS	26173343	26173440	.	-	0	Parent=Os02t0649900-01
Chr02	irgsp1_rep	CDS	26173129	26173263	.	-	1	Parent=Os02t0649900-01
Chr02	irgsp1_rep	CDS	26172836	26173025	.	-	1	Parent=Os02t0649900-01
Chr02	irgsp1_rep	CDS	26172630	26172744	.	-	0	Parent=Os02t0649900-01
Chr02	irgsp1_rep	CDS	26171617	26172545	.	-	2	Parent=Os02t0649900-01
Chr02	irgsp1_rep	mRNA	26200335	26204468	.	-	.	ID=Os02t0650300-01;Name=Os02t0650300-01;Locus_id=Os02g0650300;RAP-DB Gene Symbol Synonym(s)=YSL15%2C OsYSL15%2C OsYs7;RAP-DB Gene Name Synonym(s)=YELLOW STRIP-LIKE GENE 15%2C rice YSL (yellow stripe-like) gene 15%2C Iron-phytosiderophore transporter YSL15%2C Protein YELLOW STRIPE LIKE 15%2C ferric Fe-DMA transporter OsYSL15%2C yellow stripe 1-like transporter 15;CGSNL Gene Symbol=YSL15;CGSNL Gene Name=YELLOW STRIP-LIKE GENE 15;Oryzabase Gene Symbol Synonym(s)=OsYSL15%2C OsYs7;Oryzabase Gene Name Synonym(s)=rice YSL (yellow stripe-like) gene 15%2C Iron-phytosiderophore transporter YSL15%2C Protein YELLOW STRIPE LIKE 15%2C ferric Fe-DMA transporter OsYSL15%2C yellow stripe 1-like transporter 15;Note=Iron-phytosiderophore transporter%2C Iron homeostasis;Transcript_evidence=AB190923 (DDBJ);ORF_evidence=Q6H3Z3 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085);InterPro=Oligopeptide transporter OPT superfamily (IPR004813);Manual Curation=July 17%2C 2009;Literature_PMID=15255870,19049971,19376836;Oryzabase=8356;TENOR=Os02t0650300-01
Chr02	irgsp1_rep	CDS	26204093	26204468	.	-	0	Parent=Os02t0650300-01
Chr02	irgsp1_rep	CDS	26203204	26203373	.	-	2	Parent=Os02t0650300-01
Chr02	irgsp1_rep	CDS	26202124	26202221	.	-	0	Parent=Os02t0650300-01
Chr02	irgsp1_rep	CDS	26201887	26202021	.	-	1	Parent=Os02t0650300-01
Chr02	irgsp1_rep	CDS	26201596	26201785	.	-	1	Parent=Os02t0650300-01
Chr02	irgsp1_rep	CDS	26201392	26201509	.	-	0	Parent=Os02t0650300-01
Chr02	irgsp1_rep	CDS	26200335	26201266	.	-	2	Parent=Os02t0650300-01
Chr02	irgsp1_rep	mRNA	26200136	26202104	.	-	.	ID=Os02t0650300-02;Name=Os02t0650300-02;Locus_id=Os02g0650300;CGSNL Gene Symbol=YSL15;CGSNL Gene Name=YELLOW STRIP-LIKE GENE 15;Oryzabase Gene Symbol Synonym(s)=OsYSL15%2C OsYs7;Oryzabase Gene Name Synonym(s)=rice YSL (yellow stripe-like) gene 15%2C Iron-phytosiderophore transporter YSL15%2C Protein YELLOW STRIPE LIKE 15%2C ferric Fe-DMA transporter OsYSL15%2C yellow stripe 1-like transporter 15;Note=Similar to Iron-phytosiderophore transporter YSL15.;Transcript_evidence=AK063464 (DDBJ%2C Best hit);ORF_evidence=Q6H3Z3 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085);InterPro=Oligopeptide transporter OPT superfamily (IPR004813);NIAS_FLcDNA=001-115-H05;Oryzabase=8356;Expression=AK063464;TENOR=Os02t0650300-02
Chr02	irgsp1_rep	five_prime_UTR	26202051	26202104	.	-	.	Parent=Os02t0650300-02
Chr02	irgsp1_rep	CDS	26201887	26202050	.	-	0	Parent=Os02t0650300-02
Chr02	irgsp1_rep	CDS	26201572	26201785	.	-	1	Parent=Os02t0650300-02
Chr02	irgsp1_rep	three_prime_UTR	26200136	26201571	.	-	.	Parent=Os02t0650300-02
Chr02	irgsp1_rep	mRNA	26209010	26213005	.	-	.	ID=Os02t0650500-01;Name=Os02t0650500-01;Locus_id=Os02g0650500;CGSNL Gene Symbol=RLCK80;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 80;Oryzabase Gene Symbol Synonym(s)=OsRLCK80;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 80;Note=Similar to Protein kinase-like (Protein serine/threonine kinase).;Transcript_evidence=AK101160 (DDBJ%2C Best hit);ORF_evidence=NP_001147668.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J033027K21;Oryzabase=18792;Expression=AK101160;TENOR=Os02t0650500-01;KEGG=Os02t0650500-01
Chr02	irgsp1_rep	five_prime_UTR	26212624	26213005	.	-	.	Parent=Os02t0650500-01
Chr02	irgsp1_rep	CDS	26212165	26212623	.	-	0	Parent=Os02t0650500-01
Chr02	irgsp1_rep	CDS	26211331	26211591	.	-	0	Parent=Os02t0650500-01
Chr02	irgsp1_rep	CDS	26209993	26210115	.	-	0	Parent=Os02t0650500-01
Chr02	irgsp1_rep	CDS	26209299	26209853	.	-	0	Parent=Os02t0650500-01
Chr02	irgsp1_rep	three_prime_UTR	26209010	26209298	.	-	.	Parent=Os02t0650500-01
Chr02	irgsp1_rep	mRNA	26208987	26209581	.	-	.	ID=Os02t0650500-02;Name=Os02t0650500-02;Locus_id=Os02g0650500;CGSNL Gene Symbol=RLCK80;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 80;Oryzabase Gene Symbol Synonym(s)=OsRLCK80;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 80;Note=Hypothetical conserved gene.;Transcript_evidence=AK063883 (DDBJ%2C Best hit);ORF_evidence=A2X7U8 (UniProt);NIAS_FLcDNA=001-122-F10;Oryzabase=18792;Expression=AK063883;TENOR=Os02t0650500-02;KEGG=Os02t0650500-02
Chr02	irgsp1_rep	five_prime_UTR	26209581	26209581	.	-	.	Parent=Os02t0650500-02
Chr02	irgsp1_rep	CDS	26209299	26209580	.	-	0	Parent=Os02t0650500-02
Chr02	irgsp1_rep	three_prime_UTR	26208987	26209298	.	-	.	Parent=Os02t0650500-02
Chr02	irgsp1_rep	mRNA	26234414	26238290	.	+	.	ID=Os02t0650800-00;Name=Os02t0650800-00;Locus_id=Os02g0650800;Oryzabase Gene Symbol Synonym(s)=CTD2;Oryzabase Gene Name Synonym(s)=ATP-dependent helicase CTD2;Note=SNF2-related domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3A9N2 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524);InterPro=SNF2-related (IPR000330),Helicase%2C C-terminal (IPR001650),DEAD-like helicase (IPR014001);Oryzabase=11606;TENOR=Os02t0650800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	26234414	26235241	.	+	0	Parent=Os02t0650800-00
Chr02	irgsp1_rep	CDS	26236165	26236317	.	+	0	Parent=Os02t0650800-00
Chr02	irgsp1_rep	CDS	26236458	26238290	.	+	0	Parent=Os02t0650800-00
Chr02	irgsp1_rep	mRNA	26240232	26242980	.	+	.	ID=Os02t0650900-01;Name=Os02t0650900-01;Locus_id=Os02g0650900;CGSNL Gene Symbol=GDH3;CGSNL Gene Name=GLUTAMATE DEHYDROGENASE 3;Oryzabase Gene Symbol Synonym(s)=OsGDH3;Oryzabase Gene Name Synonym(s)=glutamate dehydrogenase 3;Note=Similar to Glutamate dehydrogenase 2 (EC 1.4.1.3) (GDH 2).;Transcript_evidence=AK103028 (DDBJ%2C Best hit);ORF_evidence=Q33E23 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-NH2 group of donors%2C NAD or NADP as acceptor (GO:0016639);InterPro=Glutamate/phenylalanine/leucine/valine dehydrogenase (IPR006095),Glutamate/phenylalanine/leucine/valine dehydrogenase%2C C-terminal (IPR006096),Glutamate/phenylalanine/leucine/valine dehydrogenase%2C dimerisation domain (IPR006097),Glutamate dehydrogenase (IPR014362),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033117C02;Oryzabase=9309;Expression=AK103028;TENOR=Os02t0650900-01;KEGG=Os02t0650900-01 (EC:1.4.1.3)
Chr02	irgsp1_rep	five_prime_UTR	26240232	26240347	.	+	.	Parent=Os02t0650900-01
Chr02	irgsp1_rep	CDS	26240348	26240455	.	+	0	Parent=Os02t0650900-01
Chr02	irgsp1_rep	CDS	26240606	26240719	.	+	0	Parent=Os02t0650900-01
Chr02	irgsp1_rep	CDS	26240842	26241063	.	+	0	Parent=Os02t0650900-01
Chr02	irgsp1_rep	CDS	26241167	26241241	.	+	0	Parent=Os02t0650900-01
Chr02	irgsp1_rep	CDS	26241334	26241450	.	+	0	Parent=Os02t0650900-01
Chr02	irgsp1_rep	CDS	26241553	26241803	.	+	0	Parent=Os02t0650900-01
Chr02	irgsp1_rep	CDS	26242340	26242415	.	+	1	Parent=Os02t0650900-01
Chr02	irgsp1_rep	CDS	26242552	26242638	.	+	0	Parent=Os02t0650900-01
Chr02	irgsp1_rep	CDS	26242723	26242908	.	+	0	Parent=Os02t0650900-01
Chr02	irgsp1_rep	three_prime_UTR	26242909	26242980	.	+	.	Parent=Os02t0650900-01
Chr02	irgsp1_rep	mRNA	26243702	26244999	.	-	.	ID=Os02t0651000-01;Name=Os02t0651000-01;Locus_id=Os02g0651000;Note=Uncharacterised protein family UPF0406 domain containing protein.;Transcript_evidence=AK062626 (DDBJ%2C Best hit);ORF_evidence=B9F1E1 (UniProt);InterPro=Uncharacterised protein family UPF0406 (IPR019146);NIAS_FLcDNA=001-105-C03;Expression=AK062626;TENOR=Os02t0651000-01;KEGG=Os02t0651000-01
Chr02	irgsp1_rep	five_prime_UTR	26244999	26244999	.	-	.	Parent=Os02t0651000-01
Chr02	irgsp1_rep	CDS	26244790	26244998	.	-	0	Parent=Os02t0651000-01
Chr02	irgsp1_rep	CDS	26244536	26244632	.	-	1	Parent=Os02t0651000-01
Chr02	irgsp1_rep	CDS	26244318	26244383	.	-	0	Parent=Os02t0651000-01
Chr02	irgsp1_rep	CDS	26243793	26243987	.	-	0	Parent=Os02t0651000-01
Chr02	irgsp1_rep	three_prime_UTR	26243702	26243792	.	-	.	Parent=Os02t0651000-01
Chr02	irgsp1_rep	mRNA	26246799	26247122	.	+	.	ID=Os02t0651200-00;Name=Os02t0651200-00;Locus_id=Os02g0651200;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001047592.1 (RefSeq);TENOR=Os02t0651200-00;KEGG=Os02t0651200-00
Chr02	irgsp1_rep	CDS	26246799	26247122	.	+	0	Parent=Os02t0651200-00
Chr02	irgsp1_rep	mRNA	26248643	26251980	.	-	.	ID=Os02t0651300-01;Name=Os02t0651300-01;Locus_id=Os02g0651300;CGSNL Gene Symbol=OR;CGSNL Gene Name=ORANGE;Oryzabase Gene Symbol Synonym(s)=Osor;Oryzabase Gene Name Synonym(s)=Orange;Note=Similar to OR.;Transcript_evidence=AK099767 (DDBJ%2C Best hit);ORF_evidence=A2T1U1 (UniProt);GO=Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C cysteine-rich domain (IPR001305);NIAS_FLcDNA=J013095B06;Oryzabase=23476;TENOR=Os02t0651300-01
Chr02	irgsp1_rep	five_prime_UTR	26251800	26251980	.	-	.	Parent=Os02t0651300-01
Chr02	irgsp1_rep	CDS	26251540	26251799	.	-	0	Parent=Os02t0651300-01
Chr02	irgsp1_rep	CDS	26250890	26251004	.	-	1	Parent=Os02t0651300-01
Chr02	irgsp1_rep	CDS	26250324	26250440	.	-	0	Parent=Os02t0651300-01
Chr02	irgsp1_rep	CDS	26250100	26250186	.	-	0	Parent=Os02t0651300-01
Chr02	irgsp1_rep	CDS	26249926	26250002	.	-	0	Parent=Os02t0651300-01
Chr02	irgsp1_rep	CDS	26249679	26249806	.	-	1	Parent=Os02t0651300-01
Chr02	irgsp1_rep	CDS	26249096	26249232	.	-	2	Parent=Os02t0651300-01
Chr02	irgsp1_rep	CDS	26248899	26248976	.	-	0	Parent=Os02t0651300-01
Chr02	irgsp1_rep	three_prime_UTR	26248643	26248898	.	-	.	Parent=Os02t0651300-01
Chr02	irgsp1_rep	mRNA	26248644	26251694	.	-	.	ID=Os02t0651300-02;Name=Os02t0651300-02;Locus_id=Os02g0651300;CGSNL Gene Symbol=OR;CGSNL Gene Name=ORANGE;Oryzabase Gene Symbol Synonym(s)=Osor;Oryzabase Gene Name Synonym(s)=Orange;Note=Similar to OR.;Transcript_evidence=AK061454 (DDBJ%2C Best hit);ORF_evidence=A2T1U1 (UniProt);GO=Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C cysteine-rich domain (IPR001305);NIAS_FLcDNA=006-307-G08;Oryzabase=23476;TENOR=Os02t0651300-02
Chr02	irgsp1_rep	CDS	26251540	26251694	.	-	0	Parent=Os02t0651300-02
Chr02	irgsp1_rep	CDS	26250890	26251004	.	-	1	Parent=Os02t0651300-02
Chr02	irgsp1_rep	CDS	26250324	26250440	.	-	0	Parent=Os02t0651300-02
Chr02	irgsp1_rep	CDS	26250100	26250186	.	-	0	Parent=Os02t0651300-02
Chr02	irgsp1_rep	CDS	26249926	26250002	.	-	0	Parent=Os02t0651300-02
Chr02	irgsp1_rep	CDS	26249679	26249806	.	-	1	Parent=Os02t0651300-02
Chr02	irgsp1_rep	CDS	26249096	26249232	.	-	2	Parent=Os02t0651300-02
Chr02	irgsp1_rep	CDS	26248899	26248976	.	-	0	Parent=Os02t0651300-02
Chr02	irgsp1_rep	three_prime_UTR	26248644	26248898	.	-	.	Parent=Os02t0651300-02
Chr02	irgsp1_rep	mRNA	26262647	26265666	.	+	.	ID=Os02t0651500-01;Name=Os02t0651500-01;Locus_id=Os02g0651500;Note=Conserved hypothetical protein.;Transcript_evidence=AK121865 (DDBJ%2C Best hit),AK066333 (DDBJ%2C Best hit);ORF_evidence=F2DGW9 (UniProt);NIAS_FLcDNA=J033103F15,J013064F10;TENOR=Os02t0651500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	26262647	26264902	.	+	.	Parent=Os02t0651500-01
Chr02	irgsp1_rep	CDS	26264903	26265085	.	+	0	Parent=Os02t0651500-01
Chr02	irgsp1_rep	three_prime_UTR	26265086	26265666	.	+	.	Parent=Os02t0651500-01
Chr02	irgsp1_rep	mRNA	26262741	26263048	.	+	.	ID=Os02t0651500-03;Name=Os02t0651500-03;Locus_id=Os02g0651500;Note=Non-protein coding transcript.;Transcript_evidence=AK059426 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-027-E09;TENOR=Os02t0651500-03
Chr02	irgsp1_rep	exon	26262741	26263048	.	+	.	Parent=Os02t0651500-03
Chr02	irgsp1_rep	mRNA	26263454	26264869	.	+	.	ID=Os02t0651500-04;Name=Os02t0651500-04;Locus_id=Os02g0651500;Note=Conserved hypothetical protein.;Transcript_evidence=AK072476 (DDBJ%2C Best hit);ORF_evidence=F2DGW9 (UniProt);NIAS_FLcDNA=J023124O19;TENOR=Os02t0651500-04;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	26263454	26264735	.	+	.	Parent=Os02t0651500-04
Chr02	irgsp1_rep	CDS	26264736	26264869	.	+	0	Parent=Os02t0651500-04
Chr02	irgsp1_rep	mRNA	26265270	26265575	.	+	.	ID=Os02t0651500-05;Name=Os02t0651500-05;Locus_id=Os02g0651500;Note=Non-protein coding transcript.;Transcript_evidence=AK058970 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-020-C12;TENOR=Os02t0651500-05
Chr02	irgsp1_rep	exon	26265270	26265575	.	+	.	Parent=Os02t0651500-05
Chr02	irgsp1_rep	mRNA	26271681	26272652	.	+	.	ID=Os02t0651900-01;Name=Os02t0651900-01;Locus_id=Os02g0651900;Note=Hypothetical protein.;Transcript_evidence=AK102949 (DDBJ%2C Best hit),AK101633 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033115D03,J033055A02;Expression=AK102949;TENOR=Os02t0651900-01;KEGG=Os02t0651900-01
Chr02	irgsp1_rep	five_prime_UTR	26271681	26271742	.	+	.	Parent=Os02t0651900-01
Chr02	irgsp1_rep	CDS	26271743	26272387	.	+	0	Parent=Os02t0651900-01
Chr02	irgsp1_rep	three_prime_UTR	26272388	26272652	.	+	.	Parent=Os02t0651900-01
Chr02	irgsp1_rep	mRNA	26275400	26277684	.	-	.	ID=Os02t0652000-01;Name=Os02t0652000-01;Locus_id=Os02g0652000;RAP-DB Gene Symbol Synonym(s)=OsCYCP4%3B2;RAP-DB Gene Name Synonym(s)=P-type cyclin 4%3B2;CGSNL Gene Symbol=CYCU4%3B4;CGSNL Gene Name=CYCLIN-U4-4;Oryzabase Gene Symbol Synonym(s)=CycU4%3B4%2C CycU4%3Bos%3B4%2C Orysa%3BCycU4%3B4%2C OsCYCP4%3B2;Oryzabase Gene Name Synonym(s)=U-type cyclin 4%3B4%2C P-type cyclin 4%3B2;Note=P-type cyclin%2C PHO80 homologous protein%2C Coordination of phosphate starvation signaling and cell cycle progression under phosphate starvation stress;Transcript_evidence=AK108827;ORF_evidence=Q6H3X9;GO=Biological Process: regulation of cyclin-dependent protein serine/threonine kinase activity (GO:0000079),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin-like superfamily (IPR036915),Cyclin PHO80-like (IPR013922),Cyclin P/U (IPR012389);NIAS_FLcDNA=002-151-F11;Manual Curation=November 13%2C 2019;Literature_PMID=31697021,25315105;Oryzabase=13285;Expression=AK108827;TENOR=Os02t0652000-01;KEGG=Os02t0652000-01
Chr02	irgsp1_rep	five_prime_UTR	26277601	26277684	.	-	.	Parent=Os02t0652000-01
Chr02	irgsp1_rep	CDS	26277224	26277600	.	-	0	Parent=Os02t0652000-01
Chr02	irgsp1_rep	CDS	26275671	26275932	.	-	1	Parent=Os02t0652000-01
Chr02	irgsp1_rep	three_prime_UTR	26275400	26275670	.	-	.	Parent=Os02t0652000-01
Chr02	irgsp1_rep	mRNA	26280287	26283888	.	-	.	ID=Os02t0652100-01;Name=Os02t0652100-01;Locus_id=Os02g0652100;CGSNL Gene Symbol=WRKY34;CGSNL Gene Name=WRKY GENE 34;Oryzabase Gene Symbol Synonym(s)=OsWRKY34;Oryzabase Gene Name Synonym(s)=Rice WRKY gene34;Note=Similar to WRKY-like DNA-binding protein.;Transcript_evidence=AK072906 (DDBJ%2C Best hit);ORF_evidence=Q949F7 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);NIAS_FLcDNA=J023147K18;Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6547;Expression=AK072906;TENOR=Os02t0652100-01;KEGG=Os02t0652100-01
Chr02	irgsp1_rep	five_prime_UTR	26283826	26283888	.	-	.	Parent=Os02t0652100-01
Chr02	irgsp1_rep	CDS	26283589	26283825	.	-	0	Parent=Os02t0652100-01
Chr02	irgsp1_rep	CDS	26283433	26283494	.	-	0	Parent=Os02t0652100-01
Chr02	irgsp1_rep	CDS	26283166	26283358	.	-	1	Parent=Os02t0652100-01
Chr02	irgsp1_rep	three_prime_UTR	26280287	26283165	.	-	.	Parent=Os02t0652100-01
Chr02	irgsp1_rep	mRNA	26297039	26301052	.	-	.	ID=Os02t0652300-01;Name=Os02t0652300-01;Locus_id=Os02g0652300;Note=Engulfment and cell motility%2C ELM domain containing protein.;Transcript_evidence=AK069478 (DDBJ%2C Best hit);ORF_evidence=B4G0D5 (UniProt);GO=Biological Process: phagocytosis (GO:0006909),Cellular Component: cytoskeleton (GO:0005856);InterPro=Engulfment/cell motility%2C ELMO (IPR006816);NIAS_FLcDNA=J023020M12;Expression=AK069478;TENOR=Os02t0652300-01;KEGG=Os02t0652300-01
Chr02	irgsp1_rep	five_prime_UTR	26300762	26301052	.	-	.	Parent=Os02t0652300-01
Chr02	irgsp1_rep	CDS	26300668	26300761	.	-	0	Parent=Os02t0652300-01
Chr02	irgsp1_rep	CDS	26300416	26300525	.	-	2	Parent=Os02t0652300-01
Chr02	irgsp1_rep	CDS	26299986	26300054	.	-	0	Parent=Os02t0652300-01
Chr02	irgsp1_rep	CDS	26299327	26299442	.	-	0	Parent=Os02t0652300-01
Chr02	irgsp1_rep	CDS	26299189	26299243	.	-	1	Parent=Os02t0652300-01
Chr02	irgsp1_rep	CDS	26298432	26298552	.	-	0	Parent=Os02t0652300-01
Chr02	irgsp1_rep	CDS	26298244	26298291	.	-	2	Parent=Os02t0652300-01
Chr02	irgsp1_rep	CDS	26297680	26297774	.	-	2	Parent=Os02t0652300-01
Chr02	irgsp1_rep	CDS	26297430	26297531	.	-	0	Parent=Os02t0652300-01
Chr02	irgsp1_rep	three_prime_UTR	26297039	26297429	.	-	.	Parent=Os02t0652300-01
Chr02	irgsp1_rep	mRNA	26308559	26316112	.	-	.	ID=Os02t0652550-00;Name=Os02t0652550-00;Locus_id=Os02g0652550;Note=Similar to predicted protein.;Transcript_evidence=BT068147 (DDBJ);ORF_evidence=XP_002863353.1 (RefSeq);GO=Molecular Function: structural molecule activity (GO:0005198);InterPro=Major sperm protein (IPR000535),PapD-like (IPR008962),Vesicle-associated membrane protein (IPR016763);TENOR=Os02t0652550-00;KEGG=Os02t0652550-00
Chr02	irgsp1_rep	CDS	26316019	26316112	.	-	0	Parent=Os02t0652550-00
Chr02	irgsp1_rep	CDS	26315749	26315811	.	-	2	Parent=Os02t0652550-00
Chr02	irgsp1_rep	CDS	26315573	26315643	.	-	2	Parent=Os02t0652550-00
Chr02	irgsp1_rep	CDS	26312289	26312370	.	-	0	Parent=Os02t0652550-00
Chr02	irgsp1_rep	CDS	26312025	26312140	.	-	2	Parent=Os02t0652550-00
Chr02	irgsp1_rep	CDS	26311781	26311918	.	-	0	Parent=Os02t0652550-00
Chr02	irgsp1_rep	CDS	26311670	26311696	.	-	0	Parent=Os02t0652550-00
Chr02	irgsp1_rep	CDS	26309618	26309692	.	-	0	Parent=Os02t0652550-00
Chr02	irgsp1_rep	CDS	26308890	26309027	.	-	0	Parent=Os02t0652550-00
Chr02	irgsp1_rep	three_prime_UTR	26308882	26308889	.	-	.	Parent=Os02t0652550-00
Chr02	irgsp1_rep	three_prime_UTR	26308559	26308825	.	-	.	Parent=Os02t0652550-00
Chr02	irgsp1_rep	mRNA	26310789	26314082	.	+	.	ID=Os02t0652575-01;Name=Os02t0652575-01;Locus_id=Os02g0652575;Note=Hypothetical gene.;Transcript_evidence=AK288253 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090015J01;TENOR=Os02t0652575-01;KEGG=Os02t0652575-01
Chr02	irgsp1_rep	five_prime_UTR	26310789	26312158	.	+	.	Parent=Os02t0652575-01
Chr02	irgsp1_rep	CDS	26312159	26312374	.	+	0	Parent=Os02t0652575-01
Chr02	irgsp1_rep	three_prime_UTR	26312375	26314082	.	+	.	Parent=Os02t0652575-01
Chr02	irgsp1_rep	mRNA	26317499	26320413	.	-	.	ID=Os02t0652600-02;Name=Os02t0652600-02;Locus_id=Os02g0652600;Note=Ribosomal protein L19 family protein.;Transcript_evidence=AK068164 (DDBJ%2C Best hit),AK104153 (DDBJ%2C Best hit);ORF_evidence=A6MZL6 (UniProt);NIAS_FLcDNA=J013135C05,006-209-G03;Expression=AK068164;TENOR=Os02t0652600-02;KEGG=Os02t0652600-02
Chr02	irgsp1_rep	five_prime_UTR	26320357	26320413	.	-	.	Parent=Os02t0652600-02
Chr02	irgsp1_rep	CDS	26319979	26320356	.	-	0	Parent=Os02t0652600-02
Chr02	irgsp1_rep	CDS	26319101	26319187	.	-	0	Parent=Os02t0652600-02
Chr02	irgsp1_rep	CDS	26318888	26319018	.	-	0	Parent=Os02t0652600-02
Chr02	irgsp1_rep	CDS	26317739	26317847	.	-	1	Parent=Os02t0652600-02
Chr02	irgsp1_rep	three_prime_UTR	26317499	26317738	.	-	.	Parent=Os02t0652600-02
Chr02	irgsp1_rep	mRNA	26323360	26326135	.	+	.	ID=Os02t0652800-01;Name=Os02t0652800-01;Locus_id=Os02g0652800;CGSNL Gene Symbol=GLPT1;CGSNL Gene Name=GLYCEROL-3-PHOSPHATE TRANSPORTER 1;Oryzabase Gene Symbol Synonym(s)=OsGlpT1%2C GlpT1;Oryzabase Gene Name Synonym(s)=GlpT protein 1%2C Glycerol-3-phosphate transporter 1%2C G3P transporter 1;Note=Major facilitator superfamily MFS_1 protein.;Transcript_evidence=AK063448 (DDBJ%2C Best hit);ORF_evidence=NP_193488.2 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=001-115-F09;Oryzabase=23014;Expression=AK063448;TENOR=Os02t0652800-01;KEGG=Os02t0652800-01
Chr02	irgsp1_rep	five_prime_UTR	26323360	26323410	.	+	.	Parent=Os02t0652800-01
Chr02	irgsp1_rep	CDS	26323411	26324308	.	+	0	Parent=Os02t0652800-01
Chr02	irgsp1_rep	CDS	26324976	26325524	.	+	2	Parent=Os02t0652800-01
Chr02	irgsp1_rep	CDS	26325618	26325655	.	+	2	Parent=Os02t0652800-01
Chr02	irgsp1_rep	three_prime_UTR	26325656	26326135	.	+	.	Parent=Os02t0652800-01
Chr02	irgsp1_rep	mRNA	26337576	26337979	.	+	.	ID=Os02t0653000-01;Name=Os02t0653000-01;Locus_id=Os02g0653000;Note=Non-protein coding transcript.;Transcript_evidence=AK062922 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-108-H08;TENOR=Os02t0653000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	exon	26337576	26337979	.	+	.	Parent=Os02t0653000-01
Chr02	irgsp1_rep	mRNA	26343570	26344263	.	-	.	ID=Os02t0653200-01;Name=Os02t0653200-01;Locus_id=Os02g0653200;CGSNL Gene Symbol=UCL4;CGSNL Gene Name=UCLACYANIN-LIKE PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OsUCL4;Oryzabase Gene Name Synonym(s)=uclacyanin-like protein 4;Note=Cupredoxin domain containing protein.;Transcript_evidence=AK062889 (DDBJ%2C Best hit);ORF_evidence=Q949E8 (UniProt);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);NIAS_FLcDNA=001-108-E02;Oryzabase=9753;Expression=AK062889;TENOR=Os02t0653200-01;KEGG=Os02t0653200-01
Chr02	irgsp1_rep	CDS	26343766	26344263	.	-	0	Parent=Os02t0653200-01
Chr02	irgsp1_rep	three_prime_UTR	26343570	26343765	.	-	.	Parent=Os02t0653200-01
Chr02	irgsp1_rep	mRNA	26348652	26350040	.	+	.	ID=Os02t0653300-01;Name=Os02t0653300-01;Locus_id=Os02g0653300;Note=Conserved hypothetical protein.;Transcript_evidence=AK099958 (DDBJ%2C Best hit),AK071925 (DDBJ%2C Best hit);ORF_evidence=Q949E7 (UniProt);NIAS_FLcDNA=J013126A13,J013069L02;Expression=AK099958;TENOR=Os02t0653300-01;KEGG=Os02t0653300-01
Chr02	irgsp1_rep	five_prime_UTR	26348652	26348768	.	+	.	Parent=Os02t0653300-01
Chr02	irgsp1_rep	CDS	26348769	26348935	.	+	0	Parent=Os02t0653300-01
Chr02	irgsp1_rep	CDS	26349105	26349375	.	+	1	Parent=Os02t0653300-01
Chr02	irgsp1_rep	three_prime_UTR	26349376	26350040	.	+	.	Parent=Os02t0653300-01
Chr02	irgsp1_rep	mRNA	26349749	26353445	.	-	.	ID=Os02t0653400-01;Name=Os02t0653400-01;Locus_id=Os02g0653400;Note=Similar to OSIGBa0101C23.8 protein.;Transcript_evidence=AK287931 (DDBJ%2C Best hit);ORF_evidence=NP_001151147.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J065219B01;TENOR=Os02t0653400-01;KEGG=Os02t0653400-01
Chr02	irgsp1_rep	five_prime_UTR	26353361	26353445	.	-	.	Parent=Os02t0653400-01
Chr02	irgsp1_rep	CDS	26352881	26353360	.	-	0	Parent=Os02t0653400-01
Chr02	irgsp1_rep	CDS	26350069	26350746	.	-	0	Parent=Os02t0653400-01
Chr02	irgsp1_rep	three_prime_UTR	26349749	26350068	.	-	.	Parent=Os02t0653400-01
Chr02	irgsp1_rep	mRNA	26365902	26370471	.	+	.	ID=Os02t0653800-01;Name=Os02t0653800-01;Locus_id=Os02g0653800;Oryzabase Gene Symbol Synonym(s)=OsRab1C3%2C OsRab1;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab1C3;Note=Similar to GTP-binding protein.;Transcript_evidence=AK243329 (DDBJ%2C Best hit);ORF_evidence=NP_001105441.1 (RefSeq);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: intracellular protein transport (GO:0006886),Biological Process: nucleocytoplasmic transport (GO:0006913),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Cellular Component: membrane (GO:0016020),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Ran GTPase (IPR002041),Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C Ras type (IPR020849),Small GTPase superfamily%2C ARF type (IPR024156);NIAS_FLcDNA=J100058B03;Oryzabase=11074;TENOR=Os02t0653800-01;KEGG=Os02t0653800-01
Chr02	irgsp1_rep	five_prime_UTR	26365902	26365992	.	+	.	Parent=Os02t0653800-01
Chr02	irgsp1_rep	CDS	26365993	26366006	.	+	0	Parent=Os02t0653800-01
Chr02	irgsp1_rep	CDS	26367883	26367955	.	+	1	Parent=Os02t0653800-01
Chr02	irgsp1_rep	CDS	26368282	26368329	.	+	0	Parent=Os02t0653800-01
Chr02	irgsp1_rep	CDS	26368413	26368460	.	+	0	Parent=Os02t0653800-01
Chr02	irgsp1_rep	CDS	26369497	26369568	.	+	0	Parent=Os02t0653800-01
Chr02	irgsp1_rep	CDS	26369663	26369818	.	+	0	Parent=Os02t0653800-01
Chr02	irgsp1_rep	CDS	26369935	26370038	.	+	0	Parent=Os02t0653800-01
Chr02	irgsp1_rep	CDS	26370135	26370231	.	+	1	Parent=Os02t0653800-01
Chr02	irgsp1_rep	three_prime_UTR	26370232	26370471	.	+	.	Parent=Os02t0653800-01
Chr02	irgsp1_rep	mRNA	26367884	26370310	.	-	.	ID=Os02t0653850-00;Name=Os02t0653850-00;Locus_id=Os02g0653850;Note=Hypothetical gene.;Transcript_evidence=BT019232 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0653850-00;KEGG=Os02t0653850-00
Chr02	irgsp1_rep	five_prime_UTR	26370310	26370310	.	-	.	Parent=Os02t0653850-00
Chr02	irgsp1_rep	CDS	26370132	26370309	.	-	0	Parent=Os02t0653850-00
Chr02	irgsp1_rep	CDS	26369920	26370035	.	-	2	Parent=Os02t0653850-00
Chr02	irgsp1_rep	three_prime_UTR	26369915	26369919	.	-	.	Parent=Os02t0653850-00
Chr02	irgsp1_rep	three_prime_UTR	26369663	26369804	.	-	.	Parent=Os02t0653850-00
Chr02	irgsp1_rep	three_prime_UTR	26369463	26369568	.	-	.	Parent=Os02t0653850-00
Chr02	irgsp1_rep	three_prime_UTR	26368294	26368343	.	-	.	Parent=Os02t0653850-00
Chr02	irgsp1_rep	three_prime_UTR	26367884	26367967	.	-	.	Parent=Os02t0653850-00
Chr02	irgsp1_rep	mRNA	26379646	26381606	.	+	.	ID=Os02t0653900-03;Name=Os02t0653900-03;Locus_id=Os02g0653900;Oryzabase Gene Symbol Synonym(s)=OsDAD1%3B3%2C DAD1%3B3;Note=Similar to Avr9/Cf-9 rapidly elicited protein 14 (Fragment).;Transcript_evidence=AK064950 (DDBJ%2C Best hit),AK098925 (DDBJ%2C Best hit),AK104793 (DDBJ%2C Best hit),AK106154 (DDBJ%2C Best hit);ORF_evidence=Q949E1 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921);NIAS_FLcDNA=J013000P22,J013002P22,001-039-F10,001-208-A03;Oryzabase=21178;Expression=AK064950;TENOR=Os02t0653900-03;KEGG=Os02t0653900-03
Chr02	irgsp1_rep	five_prime_UTR	26379646	26379758	.	+	.	Parent=Os02t0653900-03
Chr02	irgsp1_rep	CDS	26379759	26381393	.	+	0	Parent=Os02t0653900-03
Chr02	irgsp1_rep	three_prime_UTR	26381394	26381606	.	+	.	Parent=Os02t0653900-03
Chr02	irgsp1_rep	mRNA	26381932	26385682	.	+	.	ID=Os02t0654000-01;Name=Os02t0654000-01;Locus_id=Os02g0654000;Note=Similar to Methylglutaconyl-CoA hydratase.;Transcript_evidence=AK242840 (DDBJ%2C Best hit);ORF_evidence=B6UAJ5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Crotonase%2C core (IPR001753),Crontonase%2C C-terminal (IPR014748),Enoyl-CoA hydratase/isomerase%2C conserved site (IPR018376);NIAS_FLcDNA=J090070E16;TENOR=Os02t0654000-01;KEGG=Os02t0654000-01 (EC:4.2.1.18)
Chr02	irgsp1_rep	five_prime_UTR	26381932	26381992	.	+	.	Parent=Os02t0654000-01
Chr02	irgsp1_rep	CDS	26381993	26382128	.	+	0	Parent=Os02t0654000-01
Chr02	irgsp1_rep	CDS	26382984	26383153	.	+	2	Parent=Os02t0654000-01
Chr02	irgsp1_rep	CDS	26383901	26383975	.	+	0	Parent=Os02t0654000-01
Chr02	irgsp1_rep	CDS	26384130	26384220	.	+	0	Parent=Os02t0654000-01
Chr02	irgsp1_rep	CDS	26384329	26384380	.	+	2	Parent=Os02t0654000-01
Chr02	irgsp1_rep	CDS	26384969	26385072	.	+	1	Parent=Os02t0654000-01
Chr02	irgsp1_rep	CDS	26385155	26385231	.	+	2	Parent=Os02t0654000-01
Chr02	irgsp1_rep	CDS	26385397	26385576	.	+	0	Parent=Os02t0654000-01
Chr02	irgsp1_rep	three_prime_UTR	26385577	26385682	.	+	.	Parent=Os02t0654000-01
Chr02	irgsp1_rep	mRNA	26386501	26389528	.	+	.	ID=Os02t0654100-01;Name=Os02t0654100-01;Locus_id=Os02g0654100;Note=Similar to Enoyl-CoA hydratase.;Transcript_evidence=AK101814 (DDBJ%2C Best hit);ORF_evidence=NP_001150666.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Crotonase%2C core (IPR001753),Crontonase%2C C-terminal (IPR014748),Enoyl-CoA hydratase/isomerase%2C conserved site (IPR018376);NIAS_FLcDNA=J033067A05;Expression=AK101814;TENOR=Os02t0654100-01;KEGG=Os02t0654100-01 (EC:4.2.1.17)
Chr02	irgsp1_rep	five_prime_UTR	26386501	26386558	.	+	.	Parent=Os02t0654100-01
Chr02	irgsp1_rep	CDS	26386559	26386715	.	+	0	Parent=Os02t0654100-01
Chr02	irgsp1_rep	CDS	26386811	26386980	.	+	2	Parent=Os02t0654100-01
Chr02	irgsp1_rep	CDS	26387785	26387859	.	+	0	Parent=Os02t0654100-01
Chr02	irgsp1_rep	CDS	26388077	26388167	.	+	0	Parent=Os02t0654100-01
Chr02	irgsp1_rep	CDS	26388275	26388326	.	+	2	Parent=Os02t0654100-01
Chr02	irgsp1_rep	CDS	26388697	26388800	.	+	1	Parent=Os02t0654100-01
Chr02	irgsp1_rep	CDS	26388932	26389008	.	+	2	Parent=Os02t0654100-01
Chr02	irgsp1_rep	CDS	26389177	26389353	.	+	0	Parent=Os02t0654100-01
Chr02	irgsp1_rep	three_prime_UTR	26389354	26389528	.	+	.	Parent=Os02t0654100-01
Chr02	irgsp1_rep	mRNA	26393146	26396486	.	+	.	ID=Os02t0654300-01;Name=Os02t0654300-01;Locus_id=Os02g0654300;Note=Similar to Protein kinase KIPK.;Transcript_evidence=AK101944 (DDBJ%2C Best hit);ORF_evidence=Q01J16 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033074L09;Expression=AK101944;TENOR=Os02t0654300-01;KEGG=Os02t0654300-01
Chr02	irgsp1_rep	five_prime_UTR	26393146	26393208	.	+	.	Parent=Os02t0654300-01
Chr02	irgsp1_rep	five_prime_UTR	26393435	26393720	.	+	.	Parent=Os02t0654300-01
Chr02	irgsp1_rep	CDS	26393721	26394910	.	+	0	Parent=Os02t0654300-01
Chr02	irgsp1_rep	CDS	26395425	26396307	.	+	1	Parent=Os02t0654300-01
Chr02	irgsp1_rep	three_prime_UTR	26396308	26396486	.	+	.	Parent=Os02t0654300-01
Chr02	irgsp1_rep	mRNA	26396501	26403263	.	-	.	ID=Os02t0654400-01;Name=Os02t0654400-01;Locus_id=Os02g0654400;Note=Transcription initiation factor TFIID component TAF4 domain containing protein.;Transcript_evidence=AK069133 (DDBJ%2C Best hit);ORF_evidence=B8AG30 (UniProt);GO=Biological Process: transcription initiation%2C DNA-dependent (GO:0006352),Cellular Component: transcription factor TFIID complex (GO:0005669);InterPro=Transcription initiation factor TFIID component TAF4 (IPR007900),RST domain of plant C-terminal (IPR022003);NIAS_FLcDNA=J023007I15;Expression=AK069133;TENOR=Os02t0654400-01;KEGG=Os02t0654400-01
Chr02	irgsp1_rep	five_prime_UTR	26403036	26403263	.	-	.	Parent=Os02t0654400-01
Chr02	irgsp1_rep	five_prime_UTR	26401829	26401996	.	-	.	Parent=Os02t0654400-01
Chr02	irgsp1_rep	CDS	26401481	26401828	.	-	0	Parent=Os02t0654400-01
Chr02	irgsp1_rep	CDS	26400844	26400939	.	-	0	Parent=Os02t0654400-01
Chr02	irgsp1_rep	CDS	26400022	26400687	.	-	0	Parent=Os02t0654400-01
Chr02	irgsp1_rep	CDS	26398886	26398989	.	-	0	Parent=Os02t0654400-01
Chr02	irgsp1_rep	CDS	26398697	26398784	.	-	1	Parent=Os02t0654400-01
Chr02	irgsp1_rep	CDS	26398473	26398608	.	-	0	Parent=Os02t0654400-01
Chr02	irgsp1_rep	CDS	26398320	26398375	.	-	2	Parent=Os02t0654400-01
Chr02	irgsp1_rep	CDS	26398190	26398246	.	-	0	Parent=Os02t0654400-01
Chr02	irgsp1_rep	CDS	26397964	26398107	.	-	0	Parent=Os02t0654400-01
Chr02	irgsp1_rep	CDS	26397416	26397481	.	-	0	Parent=Os02t0654400-01
Chr02	irgsp1_rep	CDS	26397098	26397347	.	-	0	Parent=Os02t0654400-01
Chr02	irgsp1_rep	CDS	26396826	26397001	.	-	2	Parent=Os02t0654400-01
Chr02	irgsp1_rep	three_prime_UTR	26396501	26396825	.	-	.	Parent=Os02t0654400-01
Chr02	irgsp1_rep	mRNA	26404870	26409438	.	+	.	ID=Os02t0654500-01;Name=Os02t0654500-01;Locus_id=Os02g0654500;CGSNL Gene Symbol=UCH3;CGSNL Gene Name=UBIQUITIN C-TERMINAL HYDROLASE 3;Oryzabase Gene Symbol Synonym(s)=OsUCH3;Oryzabase Gene Name Synonym(s)=ubiquitin C-terminal hydrolase 3;Note=Peptidase C12%2C ubiquitin carboxyl-terminal hydrolase 1 family protein.;Transcript_evidence=AK066320 (DDBJ%2C Best hit);ORF_evidence=NP_001149173.1 (RefSeq);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Cellular Component: intracellular (GO:0005622),Molecular Function: ubiquitin thiolesterase activity (GO:0004221);InterPro=Peptidase C12%2C ubiquitin carboxyl-terminal hydrolase 1 (IPR001578);NIAS_FLcDNA=J013066H16;Oryzabase=22861;Expression=AK066320;TENOR=Os02t0654500-01;KEGG=Os02t0654500-01 (EC:3.4.19.12)
Chr02	irgsp1_rep	five_prime_UTR	26404870	26404970	.	+	.	Parent=Os02t0654500-01
Chr02	irgsp1_rep	CDS	26404971	26405021	.	+	0	Parent=Os02t0654500-01
Chr02	irgsp1_rep	CDS	26405166	26405297	.	+	0	Parent=Os02t0654500-01
Chr02	irgsp1_rep	CDS	26405395	26405448	.	+	0	Parent=Os02t0654500-01
Chr02	irgsp1_rep	CDS	26407296	26407401	.	+	0	Parent=Os02t0654500-01
Chr02	irgsp1_rep	CDS	26407967	26408025	.	+	2	Parent=Os02t0654500-01
Chr02	irgsp1_rep	CDS	26408111	26408185	.	+	0	Parent=Os02t0654500-01
Chr02	irgsp1_rep	CDS	26408619	26408667	.	+	0	Parent=Os02t0654500-01
Chr02	irgsp1_rep	CDS	26408760	26408836	.	+	2	Parent=Os02t0654500-01
Chr02	irgsp1_rep	CDS	26409169	26409255	.	+	0	Parent=Os02t0654500-01
Chr02	irgsp1_rep	three_prime_UTR	26409256	26409438	.	+	.	Parent=Os02t0654500-01
Chr02	irgsp1_rep	mRNA	26409837	26411903	.	-	.	ID=Os02t0654600-00;Name=Os02t0654600-00;Locus_id=Os02g0654600;Note=Domain of unknown function DUF632 domain containing protein.;Transcript_evidence=BT054000 (DDBJ);ORF_evidence=NP_001047613.2 (RefSeq);InterPro=Domain of unknown function DUF632 (IPR006867),Domain of unknown function DUF630 (IPR006868);TENOR=Os02t0654600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	26411300	26411903	.	-	0	Parent=Os02t0654600-00
Chr02	irgsp1_rep	CDS	26410996	26411147	.	-	2	Parent=Os02t0654600-00
Chr02	irgsp1_rep	CDS	26409837	26410874	.	-	0	Parent=Os02t0654600-00
Chr02	irgsp1_rep	mRNA	26422187	26423485	.	-	.	ID=Os02t0654700-01;Name=Os02t0654700-01;Locus_id=Os02g0654700;RAP-DB Gene Symbol Synonym(s)=ERF91%2C OsERF#091%2C OsERF091%2C OsERF91%2C AP59%2C OsAP59%2C AP2/EREBP#147%2C AP2/EREBP147%2C OsBIERF3%2C BIERF3;RAP-DB Gene Name Synonym(s)=ETHYLENE RESPONSE FACTOR 91%2C Apetela2 transcription factor 59%2C ethylene response factor 91%2C ETHYLENE-RESPONSIVE ELEMENT-BINDING FACTOR 91%2C APETALA2/ethylene-responsive element binding protein 147%2C benzothiadiazole (BTH)-induced ethylene responsive transcriptional factor 3%2C benzothiadiazole-induced ethylene responsive transcriptional factor 3%2C BTH-induced ethylene responsive transcriptional factor 3%2C BTH-induced ERF transcriptional factor 3;CGSNL Gene Symbol=ERF91;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 91;Oryzabase Gene Symbol Synonym(s)=OsERF#091%2C OsERF091%2C OsERF91%2C AP59%2C OsAP59%2C AP2/EREBP#147%2C AP2/EREBP147%2C OsBIERF3%2C BIERF3;Oryzabase Gene Name Synonym(s)=Apetela2 transcription factor 59%2C ethylene response factor 91%2C ETHYLENE-RESPONSIVE ELEMENT-BINDING FACTOR 91%2C APETALA2/ethylene-responsive element binding protein 147%2C benzothiadiazole (BTH)-induced ethylene responsive transcriptional factor 3%2C benzothiadiazole-induced ethylene responsive transcriptional factor 3%2C BTH-induced ethylene responsive transcriptional factor 3%2C BTH-induced ERF transcriptional factor 3;Note=AP2/ERF family protein%2C Abiotic stress response;Transcript_evidence=AK073812 (Genbank);ORF_evidence=Q6H7H6 (UniProt);NIAS_FLcDNA=J033068P11,001-205-B11;Manual Curation=July 24%2C 2009;Literature_PMID=19429605;Oryzabase=8652;TENOR=Os02t0654700-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	26423426	26423485	.	-	.	Parent=Os02t0654700-01
Chr02	irgsp1_rep	CDS	26422514	26423425	.	-	0	Parent=Os02t0654700-01
Chr02	irgsp1_rep	three_prime_UTR	26422187	26422513	.	-	.	Parent=Os02t0654700-01
Chr02	irgsp1_rep	mRNA	26442393	26444523	.	+	.	ID=Os02t0655100-01;Name=Os02t0655100-01;Locus_id=Os02g0655100;Note=Uncharacterised protein family UPF0565 domain containing protein.;Transcript_evidence=AK073123 (DDBJ%2C Best hit);ORF_evidence=Q6H6I4 (UniProt);InterPro=Uncharacterised protein family UPF0565 (IPR018881);NIAS_FLcDNA=J033010M12;Expression=AK073123;TENOR=Os02t0655100-01;KEGG=Os02t0655100-01
Chr02	irgsp1_rep	five_prime_UTR	26442393	26442393	.	+	.	Parent=Os02t0655100-01
Chr02	irgsp1_rep	CDS	26442394	26442591	.	+	0	Parent=Os02t0655100-01
Chr02	irgsp1_rep	CDS	26442675	26442965	.	+	0	Parent=Os02t0655100-01
Chr02	irgsp1_rep	CDS	26443754	26444341	.	+	0	Parent=Os02t0655100-01
Chr02	irgsp1_rep	three_prime_UTR	26444342	26444523	.	+	.	Parent=Os02t0655100-01
Chr02	irgsp1_rep	mRNA	26456470	26457942	.	+	.	ID=Os02t0655200-01;Name=Os02t0655200-01;Locus_id=Os02g0655200;CGSNL Gene Symbol=ERF95;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 95;Oryzabase Gene Symbol Synonym(s)=OsERF#095%2C OsERF095%2C OsERF95%2C AP2/EREBP#020%2C AP2/EREBP20%2C OsSta2%2C Sta2;Oryzabase Gene Name Synonym(s)=ethylene response factor 95%2C APETALA2/ethylene-responsive element binding protein 20%2C Salt tolerance activation 2;Note=Similar to Ap25.;Transcript_evidence=AK241246 (DDBJ%2C Best hit);ORF_evidence=Q7XAD6 (UniProt);NIAS_FLcDNA=J065129D08;Oryzabase=10597;TENOR=Os02t0655200-01;KEGG=Os02t0655200-01
Chr02	irgsp1_rep	CDS	26456470	26456560	.	+	0	Parent=Os02t0655200-01
Chr02	irgsp1_rep	CDS	26457260	26457615	.	+	2	Parent=Os02t0655200-01
Chr02	irgsp1_rep	three_prime_UTR	26457616	26457942	.	+	.	Parent=Os02t0655200-01
Chr02	irgsp1_rep	mRNA	26456450	26457994	.	+	.	ID=Os02t0655200-02;Name=Os02t0655200-02;Locus_id=Os02g0655200;RAP-DB Gene Symbol Synonym(s)=ERF95%2C OsERF#095%2C OsSta2;RAP-DB Gene Name Synonym(s)=ETHYLENE RESPONSE FACTOR 95%2C Salt tolerance activation 2%2C ethylene response factor 95;CGSNL Gene Symbol=ERF95;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 95;Oryzabase Gene Symbol Synonym(s)=OsERF#095%2C OsERF095%2C OsERF95%2C AP2/EREBP#020%2C AP2/EREBP20%2C OsSta2%2C Sta2;Oryzabase Gene Name Synonym(s)=ethylene response factor 95%2C APETALA2/ethylene-responsive element binding protein 20%2C Salt tolerance activation 2;Note=ERF family protein%2C Transcriptional regulator%2C Salt stress tolerance;Transcript_evidence=Inferred from literature;ORF_evidence=Q6H6I3;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700);InterPro=DNA-binding domain (IPR016177),AP2/ERF domain (IPR001471);Manual Curation=April 7%2C 2017;Literature_PMID=28344585,16407444;Oryzabase=10597
Chr02	irgsp1_rep	five_prime_UTR	26456450	26456580	.	+	.	Parent=Os02t0655200-02
Chr02	irgsp1_rep	CDS	26456581	26457615	.	+	0	Parent=Os02t0655200-02
Chr02	irgsp1_rep	three_prime_UTR	26457616	26457994	.	+	.	Parent=Os02t0655200-02
Chr02	irgsp1_rep	mRNA	26465709	26469280	.	-	.	ID=Os02t0655300-01;Name=Os02t0655300-01;Locus_id=Os02g0655300;Note=Similar to 3-isopropylmalate dehydratase%2C small subunit.;Transcript_evidence=AK106107 (DDBJ%2C Best hit),AK061544 (DDBJ%2C Best hit);ORF_evidence=Q6URQ0 (UniProt);GO=Biological Process: metabolic process (GO:0008152);InterPro=Aconitase A/isopropylmalate dehydratase small subunit%2C swivel (IPR000573),Aconitase/3-isopropylmalate dehydratase%2C swivel (IPR015928),Aconitase/isopropylmalate dehydratase (IPR015937);NIAS_FLcDNA=001-207-D01,006-311-A03;TENOR=Os02t0655300-01
Chr02	irgsp1_rep	five_prime_UTR	26469236	26469280	.	-	.	Parent=Os02t0655300-01
Chr02	irgsp1_rep	CDS	26468462	26469235	.	-	0	Parent=Os02t0655300-01
Chr02	irgsp1_rep	three_prime_UTR	26468455	26468461	.	-	.	Parent=Os02t0655300-01
Chr02	irgsp1_rep	three_prime_UTR	26465709	26466023	.	-	.	Parent=Os02t0655300-01
Chr02	irgsp1_rep	mRNA	26467967	26469277	.	-	.	ID=Os02t0655300-02;Name=Os02t0655300-02;Locus_id=Os02g0655300;Note=Similar to 3-isopropylmalate dehydratase%2C small subunit.;Transcript_evidence=AK120006 (DDBJ%2C Best hit);ORF_evidence=Q6URQ0 (UniProt);GO=Biological Process: metabolic process (GO:0008152);InterPro=Aconitase A/isopropylmalate dehydratase small subunit%2C swivel (IPR000573),Aconitase/3-isopropylmalate dehydratase%2C swivel (IPR015928),Aconitase/isopropylmalate dehydratase (IPR015937);NIAS_FLcDNA=002-186-A03;Expression=AK120006;TENOR=Os02t0655300-02;KEGG=Os02t0655300-02 (EC:4.2.1.33%2C EC:4.2.1.35)
Chr02	irgsp1_rep	five_prime_UTR	26469236	26469277	.	-	.	Parent=Os02t0655300-02
Chr02	irgsp1_rep	CDS	26468462	26469235	.	-	0	Parent=Os02t0655300-02
Chr02	irgsp1_rep	three_prime_UTR	26467967	26468461	.	-	.	Parent=Os02t0655300-02
Chr02	irgsp1_rep	mRNA	26465724	26469245	.	-	.	ID=Os02t0655300-03;Name=Os02t0655300-03;Locus_id=Os02g0655300;Note=Similar to 3-isopropylmalate dehydratase%2C small subunit.;Transcript_evidence=AK103778 (DDBJ%2C Best hit);ORF_evidence=Q6URQ0 (UniProt);GO=Biological Process: metabolic process (GO:0008152);InterPro=Aconitase A/isopropylmalate dehydratase small subunit%2C swivel (IPR000573),Aconitase/3-isopropylmalate dehydratase%2C swivel (IPR015928),Aconitase/isopropylmalate dehydratase (IPR015937);NIAS_FLcDNA=J033145B21;Expression=AK061544;TENOR=Os02t0655300-03;KEGG=Os02t0655300-03 (EC:4.2.1.33%2C EC:4.2.1.35);B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	26469236	26469245	.	-	.	Parent=Os02t0655300-03
Chr02	irgsp1_rep	CDS	26468462	26469235	.	-	0	Parent=Os02t0655300-03
Chr02	irgsp1_rep	three_prime_UTR	26468455	26468461	.	-	.	Parent=Os02t0655300-03
Chr02	irgsp1_rep	three_prime_UTR	26465724	26466023	.	-	.	Parent=Os02t0655300-03
Chr02	irgsp1_rep	mRNA	26466817	26467222	.	-	.	ID=Os02t0655401-00;Name=Os02t0655401-00;Locus_id=Os02g0655401;Note=Non-protein coding transcript.;Transcript_evidence=EU941603 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0655401-00
Chr02	irgsp1_rep	exon	26466817	26467222	.	-	.	Parent=Os02t0655401-00
Chr02	irgsp1_rep	mRNA	26471633	26473622	.	+	.	ID=Os02t0655500-01;Name=Os02t0655500-01;Locus_id=Os02g0655500;Oryzabase Gene Symbol Synonym(s)=OsSTA68;Note=Protein of unknown function DUF862%2C eukaryotic domain containing protein.;Transcript_evidence=AK072538 (DDBJ%2C Best hit);ORF_evidence=NP_001148832.1 (RefSeq);InterPro=Domain of unknown function DUF862%2C eukaryotic (IPR008580);NIAS_FLcDNA=J023132B16;Oryzabase=19369;Expression=AK072538;TENOR=Os02t0655500-01;KEGG=Os02t0655500-01
Chr02	irgsp1_rep	five_prime_UTR	26471633	26471692	.	+	.	Parent=Os02t0655500-01
Chr02	irgsp1_rep	CDS	26471693	26471810	.	+	0	Parent=Os02t0655500-01
Chr02	irgsp1_rep	CDS	26472461	26472748	.	+	2	Parent=Os02t0655500-01
Chr02	irgsp1_rep	CDS	26472833	26472913	.	+	2	Parent=Os02t0655500-01
Chr02	irgsp1_rep	CDS	26473064	26473191	.	+	2	Parent=Os02t0655500-01
Chr02	irgsp1_rep	three_prime_UTR	26473192	26473622	.	+	.	Parent=Os02t0655500-01
Chr02	irgsp1_rep	mRNA	26476677	26481238	.	-	.	ID=Os02t0655600-01;Name=Os02t0655600-01;Locus_id=Os02g0655600;Note=Protein of unknown function DUF676%2C hydrolase-like domain containing protein.;Transcript_evidence=AK101560 (DDBJ%2C Best hit);ORF_evidence=NP_001150938.1 (RefSeq);InterPro=Domain of unknown function DUF676%2C lipase-like (IPR007751);NIAS_FLcDNA=J033050D01;Expression=AK101560;TENOR=Os02t0655600-01;KEGG=Os02t0655600-01
Chr02	irgsp1_rep	five_prime_UTR	26481035	26481238	.	-	.	Parent=Os02t0655600-01
Chr02	irgsp1_rep	CDS	26480907	26481034	.	-	0	Parent=Os02t0655600-01
Chr02	irgsp1_rep	CDS	26480271	26480338	.	-	1	Parent=Os02t0655600-01
Chr02	irgsp1_rep	CDS	26479432	26479502	.	-	2	Parent=Os02t0655600-01
Chr02	irgsp1_rep	CDS	26479204	26479353	.	-	0	Parent=Os02t0655600-01
Chr02	irgsp1_rep	three_prime_UTR	26479112	26479203	.	-	.	Parent=Os02t0655600-01
Chr02	irgsp1_rep	three_prime_UTR	26478307	26478752	.	-	.	Parent=Os02t0655600-01
Chr02	irgsp1_rep	three_prime_UTR	26478097	26478211	.	-	.	Parent=Os02t0655600-01
Chr02	irgsp1_rep	three_prime_UTR	26477210	26477307	.	-	.	Parent=Os02t0655600-01
Chr02	irgsp1_rep	three_prime_UTR	26476677	26477053	.	-	.	Parent=Os02t0655600-01
Chr02	irgsp1_rep	mRNA	26476674	26478375	.	-	.	ID=Os02t0655600-02;Name=Os02t0655600-02;Locus_id=Os02g0655600;Note=Similar to predicted protein.;Transcript_evidence=AK120854 (DDBJ%2C Best hit);ORF_evidence=NP_001150938.1 (RefSeq);NIAS_FLcDNA=J023024C02;Expression=AK120854;TENOR=Os02t0655600-02;KEGG=Os02t0655600-02
Chr02	irgsp1_rep	five_prime_UTR	26478361	26478375	.	-	.	Parent=Os02t0655600-02
Chr02	irgsp1_rep	CDS	26478307	26478360	.	-	0	Parent=Os02t0655600-02
Chr02	irgsp1_rep	CDS	26478097	26478211	.	-	0	Parent=Os02t0655600-02
Chr02	irgsp1_rep	CDS	26477210	26477307	.	-	2	Parent=Os02t0655600-02
Chr02	irgsp1_rep	CDS	26476982	26477053	.	-	0	Parent=Os02t0655600-02
Chr02	irgsp1_rep	three_prime_UTR	26476674	26476981	.	-	.	Parent=Os02t0655600-02
Chr02	irgsp1_rep	mRNA	26487337	26491117	.	+	.	ID=Os02t0655700-01;Name=Os02t0655700-01;Locus_id=Os02g0655700;Oryzabase Gene Symbol Synonym(s)=OsCAT2;Oryzabase Gene Name Synonym(s)=cationic amino acid transporter 2;Note=Amino acid/polyamine transporter I family protein.;Transcript_evidence=AK101068 (DDBJ%2C Best hit);ORF_evidence=NP_001152066.1 (RefSeq);GO=Biological Process: amino acid transmembrane transport (GO:0003333),Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: amino acid transmembrane transporter activity (GO:0015171);InterPro=Amino acid/polyamine transporter I (IPR002293),Amino acid permease domain (IPR004841);NIAS_FLcDNA=J033023I17;Oryzabase=18536;Expression=AK101068;TENOR=Os02t0655700-01;KEGG=Os02t0655700-01
Chr02	irgsp1_rep	five_prime_UTR	26487337	26487360	.	+	.	Parent=Os02t0655700-01
Chr02	irgsp1_rep	CDS	26487361	26487709	.	+	0	Parent=Os02t0655700-01
Chr02	irgsp1_rep	CDS	26488345	26488754	.	+	2	Parent=Os02t0655700-01
Chr02	irgsp1_rep	CDS	26488955	26489131	.	+	0	Parent=Os02t0655700-01
Chr02	irgsp1_rep	CDS	26489282	26489506	.	+	0	Parent=Os02t0655700-01
Chr02	irgsp1_rep	CDS	26489596	26489772	.	+	0	Parent=Os02t0655700-01
Chr02	irgsp1_rep	CDS	26489864	26490100	.	+	0	Parent=Os02t0655700-01
Chr02	irgsp1_rep	CDS	26490362	26490451	.	+	0	Parent=Os02t0655700-01
Chr02	irgsp1_rep	CDS	26490609	26490761	.	+	0	Parent=Os02t0655700-01
Chr02	irgsp1_rep	three_prime_UTR	26490762	26491117	.	+	.	Parent=Os02t0655700-01
Chr02	irgsp1_rep	mRNA	26493215	26493836	.	-	.	ID=Os02t0655750-00;Name=Os02t0655750-00;Locus_id=Os02g0655750;Note=Hypothetical gene.;Transcript_evidence=CT835442 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os02t0655750-00;KEGG=Os02t0655750-00
Chr02	irgsp1_rep	five_prime_UTR	26493809	26493836	.	-	.	Parent=Os02t0655750-00
Chr02	irgsp1_rep	CDS	26493646	26493808	.	-	0	Parent=Os02t0655750-00
Chr02	irgsp1_rep	CDS	26493368	26493561	.	-	2	Parent=Os02t0655750-00
Chr02	irgsp1_rep	three_prime_UTR	26493215	26493367	.	-	.	Parent=Os02t0655750-00
Chr02	irgsp1_rep	mRNA	26494560	26497623	.	-	.	ID=Os02t0655800-01;Name=Os02t0655800-01;Locus_id=Os02g0655800;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK060657 (DDBJ%2C Best hit);ORF_evidence=Q01I25 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-028-A05;Expression=AK060657;TENOR=Os02t0655800-01;KEGG=Os02t0655800-01
Chr02	irgsp1_rep	five_prime_UTR	26497457	26497623	.	-	.	Parent=Os02t0655800-01
Chr02	irgsp1_rep	CDS	26496802	26497456	.	-	0	Parent=Os02t0655800-01
Chr02	irgsp1_rep	CDS	26494910	26495490	.	-	2	Parent=Os02t0655800-01
Chr02	irgsp1_rep	three_prime_UTR	26494560	26494909	.	-	.	Parent=Os02t0655800-01
Chr02	irgsp1_rep	mRNA	26494520	26497530	.	-	.	ID=Os02t0655800-02;Name=Os02t0655800-02;Locus_id=Os02g0655800;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK101947 (DDBJ%2C Best hit);ORF_evidence=Q01I25 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033075D02;Expression=AK101947;TENOR=Os02t0655800-02;KEGG=Os02t0655800-02
Chr02	irgsp1_rep	five_prime_UTR	26497457	26497530	.	-	.	Parent=Os02t0655800-02
Chr02	irgsp1_rep	CDS	26496802	26497456	.	-	0	Parent=Os02t0655800-02
Chr02	irgsp1_rep	CDS	26494910	26495490	.	-	2	Parent=Os02t0655800-02
Chr02	irgsp1_rep	three_prime_UTR	26494520	26494909	.	-	.	Parent=Os02t0655800-02
Chr02	irgsp1_rep	mRNA	26501183	26502437	.	-	.	ID=Os02t0656100-01;Name=Os02t0656100-01;Locus_id=Os02g0656100;Note=Conserved hypothetical protein.;Transcript_evidence=AK073462 (DDBJ%2C Best hit);ORF_evidence=Q6H6H3 (UniProt);NIAS_FLcDNA=J033042E16;Expression=AK073462;TENOR=Os02t0656100-01;KEGG=Os02t0656100-01
Chr02	irgsp1_rep	five_prime_UTR	26502285	26502437	.	-	.	Parent=Os02t0656100-01
Chr02	irgsp1_rep	CDS	26501352	26502284	.	-	0	Parent=Os02t0656100-01
Chr02	irgsp1_rep	three_prime_UTR	26501183	26501351	.	-	.	Parent=Os02t0656100-01
Chr02	irgsp1_rep	mRNA	26501186	26502284	.	-	.	ID=Os02t0656100-02;Name=Os02t0656100-02;Locus_id=Os02g0656100;Note=Conserved hypothetical protein.;Transcript_evidence=AK058231 (DDBJ%2C Best hit);ORF_evidence=Q6H6H3 (UniProt);NIAS_FLcDNA=001-011-B12;Expression=AK058231;TENOR=Os02t0656100-02;KEGG=Os02t0656100-02
Chr02	irgsp1_rep	CDS	26501352	26502284	.	-	0	Parent=Os02t0656100-02
Chr02	irgsp1_rep	three_prime_UTR	26501186	26501351	.	-	.	Parent=Os02t0656100-02
Chr02	irgsp1_rep	mRNA	26504378	26510073	.	-	.	ID=Os02t0656200-01;Name=Os02t0656200-01;Locus_id=Os02g0656200;Oryzabase Gene Symbol Synonym(s)=OsCERK;Oryzabase Gene Name Synonym(s)=ceramide kinase;Note=Similar to Ceramide kinase.;Transcript_evidence=AK241507 (DDBJ%2C Best hit);ORF_evidence=C0LT23 (UniProt);GO=Biological Process: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway (GO:0007205),Molecular Function: diacylglycerol kinase activity (GO:0004143);InterPro=Diacylglycerol kinase%2C catalytic domain (IPR001206);NIAS_FLcDNA=J065168E20;Oryzabase=9465;TENOR=Os02t0656200-01;KEGG=Os02t0656200-01
Chr02	irgsp1_rep	five_prime_UTR	26509995	26510073	.	-	.	Parent=Os02t0656200-01
Chr02	irgsp1_rep	CDS	26509899	26509994	.	-	0	Parent=Os02t0656200-01
Chr02	irgsp1_rep	CDS	26508943	26509101	.	-	0	Parent=Os02t0656200-01
Chr02	irgsp1_rep	CDS	26508629	26508796	.	-	0	Parent=Os02t0656200-01
Chr02	irgsp1_rep	CDS	26508428	26508520	.	-	0	Parent=Os02t0656200-01
Chr02	irgsp1_rep	CDS	26508166	26508258	.	-	0	Parent=Os02t0656200-01
Chr02	irgsp1_rep	CDS	26507365	26507623	.	-	0	Parent=Os02t0656200-01
Chr02	irgsp1_rep	CDS	26507250	26507276	.	-	2	Parent=Os02t0656200-01
Chr02	irgsp1_rep	CDS	26507059	26507143	.	-	2	Parent=Os02t0656200-01
Chr02	irgsp1_rep	CDS	26506471	26506639	.	-	1	Parent=Os02t0656200-01
Chr02	irgsp1_rep	three_prime_UTR	26505766	26506470	.	-	.	Parent=Os02t0656200-01
Chr02	irgsp1_rep	three_prime_UTR	26505307	26505693	.	-	.	Parent=Os02t0656200-01
Chr02	irgsp1_rep	three_prime_UTR	26504770	26504836	.	-	.	Parent=Os02t0656200-01
Chr02	irgsp1_rep	three_prime_UTR	26504378	26504691	.	-	.	Parent=Os02t0656200-01
Chr02	irgsp1_rep	mRNA	26511108	26515513	.	+	.	ID=Os02t0656300-01;Name=Os02t0656300-01;Locus_id=Os02g0656300;Oryzabase Gene Symbol Synonym(s)=APC8%2C OsAPC8;Oryzabase Gene Name Synonym(s)=ANAPHASE PROMOTING COMPLEX 8;Note=Similar to Anaphase-promoting complex subunit 8-like protein.;Transcript_evidence=AK070096 (DDBJ%2C Best hit);ORF_evidence=Q949C2 (UniProt);GO=Biological Process: regulation of mitotic metaphase/anaphase transition (GO:0030071),Cellular Component: anaphase-promoting complex (GO:0005680),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide TPR-1 (IPR001440),Cdc23 (IPR007192),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J023041N04;Oryzabase=21054;Expression=AK070096;TENOR=Os02t0656300-01;KEGG=Os02t0656300-01
Chr02	irgsp1_rep	five_prime_UTR	26511108	26511365	.	+	.	Parent=Os02t0656300-01
Chr02	irgsp1_rep	CDS	26511366	26511454	.	+	0	Parent=Os02t0656300-01
Chr02	irgsp1_rep	CDS	26511552	26511915	.	+	1	Parent=Os02t0656300-01
Chr02	irgsp1_rep	CDS	26513184	26514434	.	+	0	Parent=Os02t0656300-01
Chr02	irgsp1_rep	CDS	26514757	26514846	.	+	0	Parent=Os02t0656300-01
Chr02	irgsp1_rep	three_prime_UTR	26514847	26515513	.	+	.	Parent=Os02t0656300-01
Chr02	irgsp1_rep	mRNA	26514904	26515402	.	-	.	ID=Os02t0656400-01;Name=Os02t0656400-01;Locus_id=Os02g0656400;Note=Conserved hypothetical protein.;Transcript_evidence=AK058940 (DDBJ%2C Best hit);ORF_evidence=B8AG46 (UniProt);NIAS_FLcDNA=001-009-G07;Expression=AK058940;TENOR=Os02t0656400-01;KEGG=Os02t0656400-01
Chr02	irgsp1_rep	five_prime_UTR	26515274	26515402	.	-	.	Parent=Os02t0656400-01
Chr02	irgsp1_rep	CDS	26515064	26515273	.	-	0	Parent=Os02t0656400-01
Chr02	irgsp1_rep	three_prime_UTR	26514904	26515063	.	-	.	Parent=Os02t0656400-01
Chr02	irgsp1_rep	mRNA	26519337	26523355	.	+	.	ID=Os02t0656500-01;Name=Os02t0656500-01;Locus_id=Os02g0656500;Oryzabase Gene Symbol Synonym(s)=OsDjA1;Oryzabase Gene Name Synonym(s)=DnaJ domain protein A1;Note=DnaJ-like protein.;Transcript_evidence=AK066420 (DDBJ%2C Best hit);ORF_evidence=Q949C1 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: response to heat (GO:0009408),Molecular Function: ATP binding (GO:0005524),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C cysteine-rich domain (IPR001305),Heat shock protein DnaJ%2C N-terminal (IPR001623),Chaperone DnaJ%2C C-terminal (IPR002939),Heat shock protein DnaJ (IPR003095),HSP40/DnaJ peptide-binding (IPR008971),Chaperone DnaJ (IPR012724),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=J013067J21;Oryzabase=12138;Expression=AK066420;TENOR=Os02t0656500-01;KEGG=Os02t0656500-01
Chr02	irgsp1_rep	five_prime_UTR	26519337	26519544	.	+	.	Parent=Os02t0656500-01
Chr02	irgsp1_rep	five_prime_UTR	26519988	26520006	.	+	.	Parent=Os02t0656500-01
Chr02	irgsp1_rep	CDS	26520007	26520156	.	+	0	Parent=Os02t0656500-01
Chr02	irgsp1_rep	CDS	26520243	26520417	.	+	0	Parent=Os02t0656500-01
Chr02	irgsp1_rep	CDS	26520515	26520644	.	+	2	Parent=Os02t0656500-01
Chr02	irgsp1_rep	CDS	26521932	26522065	.	+	1	Parent=Os02t0656500-01
Chr02	irgsp1_rep	CDS	26522136	26522278	.	+	2	Parent=Os02t0656500-01
Chr02	irgsp1_rep	CDS	26522401	26522599	.	+	0	Parent=Os02t0656500-01
Chr02	irgsp1_rep	CDS	26522690	26523021	.	+	2	Parent=Os02t0656500-01
Chr02	irgsp1_rep	three_prime_UTR	26523022	26523355	.	+	.	Parent=Os02t0656500-01
Chr02	irgsp1_rep	mRNA	26520284	26523305	.	+	.	ID=Os02t0656500-02;Name=Os02t0656500-02;Locus_id=Os02g0656500;Oryzabase Gene Symbol Synonym(s)=OsDjA1;Oryzabase Gene Name Synonym(s)=DnaJ domain protein A1;Note=Similar to DnaJ-like protein.;Transcript_evidence=AK062239 (DDBJ%2C Best hit);ORF_evidence=Q949C1 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C cysteine-rich domain (IPR001305),Chaperone DnaJ%2C C-terminal (IPR002939),HSP40/DnaJ peptide-binding (IPR008971);NIAS_FLcDNA=001-047-E06;Oryzabase=12138;Expression=AK062239;TENOR=Os02t0656500-02;KEGG=Os02t0656500-02
Chr02	irgsp1_rep	five_prime_UTR	26520284	26520284	.	+	.	Parent=Os02t0656500-02
Chr02	irgsp1_rep	CDS	26520285	26520417	.	+	0	Parent=Os02t0656500-02
Chr02	irgsp1_rep	CDS	26520515	26520644	.	+	2	Parent=Os02t0656500-02
Chr02	irgsp1_rep	CDS	26521932	26522065	.	+	1	Parent=Os02t0656500-02
Chr02	irgsp1_rep	CDS	26522136	26522278	.	+	2	Parent=Os02t0656500-02
Chr02	irgsp1_rep	CDS	26522401	26522599	.	+	0	Parent=Os02t0656500-02
Chr02	irgsp1_rep	CDS	26522690	26523021	.	+	2	Parent=Os02t0656500-02
Chr02	irgsp1_rep	three_prime_UTR	26523022	26523305	.	+	.	Parent=Os02t0656500-02
Chr02	irgsp1_rep	mRNA	26522210	26523043	.	-	.	ID=Os02t0656550-00;Name=Os02t0656550-00;Locus_id=Os02g0656550;Note=Hypothetical protein.;Transcript_evidence=BT016912 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0656550-00
Chr02	irgsp1_rep	five_prime_UTR	26522731	26523043	.	-	.	Parent=Os02t0656550-00
Chr02	irgsp1_rep	CDS	26522696	26522730	.	-	0	Parent=Os02t0656550-00
Chr02	irgsp1_rep	CDS	26522409	26522604	.	-	1	Parent=Os02t0656550-00
Chr02	irgsp1_rep	CDS	26522210	26522284	.	-	0	Parent=Os02t0656550-00
Chr02	irgsp1_rep	mRNA	26524619	26526019	.	+	.	ID=Os02t0656600-00;Name=Os02t0656600-00;Locus_id=Os02g0656600;CGSNL Gene Symbol=ERF32;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 32;Oryzabase Gene Symbol Synonym(s)=OsERF#032%2C OsERF032%2C OsERF32%2C AP2/EREBP#021%2C AP2/EREBP21;Oryzabase Gene Name Synonym(s)=ethylene response factor 32%2C APETALA2/ethylene-responsive element binding protein 21;Note=Similar to Dehydration responsive element binding protein 2B (DREB2B protein).;Transcript_evidence=CT837654 (DDBJ%2C Best hit);ORF_evidence=Q3T5M5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);Oryzabase=10550;TENOR=Os02t0656600-00;KEGG=Os02t0656600-00
Chr02	irgsp1_rep	five_prime_UTR	26524619	26524662	.	+	.	Parent=Os02t0656600-00
Chr02	irgsp1_rep	CDS	26524663	26525526	.	+	0	Parent=Os02t0656600-00
Chr02	irgsp1_rep	three_prime_UTR	26525527	26526019	.	+	.	Parent=Os02t0656600-00
Chr02	irgsp1_rep	mRNA	26550965	26552002	.	+	.	ID=Os02t0657000-01;Name=Os02t0657000-01;Locus_id=Os02g0657000;CGSNL Gene Symbol=ERF35;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 35;Oryzabase Gene Symbol Synonym(s)=OsERF#035%2C OsERF035%2C OsERF35%2C AP2/EREBP#148%2C AP2/EREBP148%2C OsAP211;Oryzabase Gene Name Synonym(s)=ethylene response factor 35%2C APETALA2/ethylene-responsive element binding protein 148%2C AP2/EREBP-type transcription factor OsAP211;Note=AP2 domain-containing protein Rap211.;Transcript_evidence=AK108830 (DDBJ%2C Best hit);ORF_evidence=Q949B2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=002-151-G03;Oryzabase=10553;Expression=AK108830;TENOR=Os02t0657000-01;KEGG=Os02t0657000-01
Chr02	irgsp1_rep	five_prime_UTR	26550965	26551100	.	+	.	Parent=Os02t0657000-01
Chr02	irgsp1_rep	CDS	26551101	26551778	.	+	0	Parent=Os02t0657000-01
Chr02	irgsp1_rep	three_prime_UTR	26551779	26552002	.	+	.	Parent=Os02t0657000-01
Chr02	irgsp1_rep	mRNA	26567302	26571664	.	-	.	ID=Os02t0657550-01;Name=Os02t0657550-01;Locus_id=Os02g0657550;Note=Conserved hypothetical protein.;Transcript_evidence=AK241148 (DDBJ%2C Best hit);ORF_evidence=NP_001173101.1 (RefSeq);NIAS_FLcDNA=J065112N11;TENOR=Os02t0657550-01;KEGG=Os02t0657550-01
Chr02	irgsp1_rep	five_prime_UTR	26571539	26571664	.	-	.	Parent=Os02t0657550-01
Chr02	irgsp1_rep	CDS	26571411	26571538	.	-	0	Parent=Os02t0657550-01
Chr02	irgsp1_rep	CDS	26567530	26567551	.	-	1	Parent=Os02t0657550-01
Chr02	irgsp1_rep	three_prime_UTR	26567302	26567529	.	-	.	Parent=Os02t0657550-01
Chr02	irgsp1_rep	mRNA	26571973	26573267	.	+	.	ID=Os02t0657600-00;Name=Os02t0657600-00;Locus_id=Os02g0657600;Oryzabase Gene Symbol Synonym(s)=OsNAGK2%2C NAGK2;Oryzabase Gene Name Synonym(s)=N-acetylglutamate kinase 2%2C N-acetyl glutamate kinase 2;Note=N-acetyl glutamate kinase 2.;Transcript_evidence=AB183868 (DDBJ%2C Best hit);ORF_evidence=Q949B4 (UniProt);GO=Biological Process: arginine biosynthetic process (GO:0006526),Biological Process: proline biosynthetic process (GO:0006561),Biological Process: cellular amino acid biosynthetic process (GO:0008652),Cellular Component: cytoplasm (GO:0005737),Molecular Function: acetylglutamate kinase activity (GO:0003991),Molecular Function: glutamate 5-kinase activity (GO:0004349);InterPro=Aspartate/glutamate/uridylate kinase (IPR001048),Glutamate/acetylglutamate kinase (IPR001057),Acetylglutamate kinase (IPR004662);Oryzabase=14063;TENOR=Os02t0657600-00;KEGG=Os02t0657600-00 (EC:2.7.2.-%2C EC:2.7.2.8)
Chr02	irgsp1_rep	five_prime_UTR	26571973	26571995	.	+	.	Parent=Os02t0657600-00
Chr02	irgsp1_rep	CDS	26571996	26572080	.	+	0	Parent=Os02t0657600-00
Chr02	irgsp1_rep	CDS	26572246	26573036	.	+	2	Parent=Os02t0657600-00
Chr02	irgsp1_rep	three_prime_UTR	26573037	26573267	.	+	.	Parent=Os02t0657600-00
Chr02	irgsp1_rep	mRNA	26573548	26576645	.	-	.	ID=Os02t0657700-01;Name=Os02t0657700-01;Locus_id=Os02g0657700;Note=Uncharacterised conserved protein UCP012943 domain containing protein.;Transcript_evidence=AK108493 (DDBJ%2C Best hit);ORF_evidence=B8AG50 (UniProt);InterPro=Uncharacterised conserved protein UCP012943 (IPR016606);NIAS_FLcDNA=002-143-G04;Expression=AK108493;TENOR=Os02t0657700-01;KEGG=Os02t0657700-01
Chr02	irgsp1_rep	five_prime_UTR	26576574	26576645	.	-	.	Parent=Os02t0657700-01
Chr02	irgsp1_rep	CDS	26576167	26576573	.	-	0	Parent=Os02t0657700-01
Chr02	irgsp1_rep	CDS	26574932	26575145	.	-	1	Parent=Os02t0657700-01
Chr02	irgsp1_rep	CDS	26574418	26574511	.	-	0	Parent=Os02t0657700-01
Chr02	irgsp1_rep	CDS	26573963	26574200	.	-	2	Parent=Os02t0657700-01
Chr02	irgsp1_rep	CDS	26573701	26573731	.	-	1	Parent=Os02t0657700-01
Chr02	irgsp1_rep	three_prime_UTR	26573548	26573700	.	-	.	Parent=Os02t0657700-01
Chr02	irgsp1_rep	mRNA	26579595	26579821	.	-	.	ID=Os02t0657775-00;Name=Os02t0657775-00;Locus_id=Os02g0657775;Note=Similar to predicted protein.;Transcript_evidence=EU940750 (DDBJ);ORF_evidence=XP_002327722.1 (RefSeq);TENOR=Os02t0657775-00;KEGG=Os02t0657775-00
Chr02	irgsp1_rep	five_prime_UTR	26579764	26579821	.	-	.	Parent=Os02t0657775-00
Chr02	irgsp1_rep	CDS	26579659	26579763	.	-	0	Parent=Os02t0657775-00
Chr02	irgsp1_rep	three_prime_UTR	26579595	26579658	.	-	.	Parent=Os02t0657775-00
Chr02	irgsp1_rep	mRNA	26582266	26582533	.	-	.	ID=Os02t0657850-00;Name=Os02t0657850-00;Locus_id=Os02g0657850;Note=Conserved hypothetical protein.;Transcript_evidence=EU941089 (DDBJ);ORF_evidence=XP_002327722.1 (RefSeq);TENOR=Os02t0657850-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	26582476	26582533	.	-	.	Parent=Os02t0657850-00
Chr02	irgsp1_rep	CDS	26582371	26582475	.	-	0	Parent=Os02t0657850-00
Chr02	irgsp1_rep	three_prime_UTR	26582266	26582370	.	-	.	Parent=Os02t0657850-00
Chr02	irgsp1_rep	mRNA	26585137	26585605	.	-	.	ID=Os02t0658000-01;Name=Os02t0658000-01;Locus_id=Os02g0658000;Note=Pleckstrin-like domain containing protein.;Transcript_evidence=AK242607 (DDBJ%2C Best hit);ORF_evidence=Q949B7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Pleckstrin homology domain (IPR001849),Pleckstrin homology-type (IPR011993),Pleckstrin-like%2C plant (IPR013666);NIAS_FLcDNA=J090015D03;TENOR=Os02t0658000-01;KEGG=Os02t0658000-01
Chr02	irgsp1_rep	five_prime_UTR	26585605	26585605	.	-	.	Parent=Os02t0658000-01
Chr02	irgsp1_rep	CDS	26585287	26585604	.	-	0	Parent=Os02t0658000-01
Chr02	irgsp1_rep	three_prime_UTR	26585137	26585286	.	-	.	Parent=Os02t0658000-01
Chr02	irgsp1_rep	mRNA	26608375	26609365	.	-	.	ID=Os02t0658100-01;Name=Os02t0658100-01;Locus_id=Os02g0658100;CGSNL Gene Symbol=TIP2%3B1;CGSNL Gene Name=TONOPLAST INTRINSIC PROTEIN 2%3B1;Oryzabase Gene Symbol Synonym(s)=OsTIP2%3B1%2C TIP2-1%2C TIP2;Oryzabase Gene Name Synonym(s)=tonoplast intrinsic protein 2%3B1%2C Probable aquaporin TIP2-1%2C Tonoplast intrinsic protein 2-1;Note=Similar to tonoplast intrinsic protein2.;Transcript_evidence=AK064728 (DDBJ%2C Best hit);ORF_evidence=NP_001105030.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Major intrinsic protein%2C conserved site (IPR022357),Aquaporin-like (IPR023271);NIAS_FLcDNA=002-120-A10;Oryzabase=7314;Expression=AK064728;TENOR=Os02t0658100-01;KEGG=Os02t0658100-01
Chr02	irgsp1_rep	five_prime_UTR	26609365	26609365	.	-	.	Parent=Os02t0658100-01
Chr02	irgsp1_rep	CDS	26609113	26609364	.	-	0	Parent=Os02t0658100-01
Chr02	irgsp1_rep	CDS	26608626	26608994	.	-	0	Parent=Os02t0658100-01
Chr02	irgsp1_rep	three_prime_UTR	26608375	26608625	.	-	.	Parent=Os02t0658100-01
Chr02	irgsp1_rep	mRNA	26608666	26608999	.	+	.	ID=Os02t0658150-00;Name=Os02t0658150-00;Locus_id=Os02g0658150;Note=Hypothetical protein.;Transcript_evidence=EU940764 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0658150-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	26608666	26608667	.	+	.	Parent=Os02t0658150-00
Chr02	irgsp1_rep	CDS	26608668	26608999	.	+	0	Parent=Os02t0658150-00
Chr02	irgsp1_rep	mRNA	26616524	26617346	.	-	.	ID=Os02t0658200-01;Name=Os02t0658200-01;Locus_id=Os02g0658200;Note=Zinc finger%2C PHD-type domain containing protein.;Transcript_evidence=AK121046 (DDBJ%2C Best hit);ORF_evidence=Q01JD0 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J023054K18;Expression=AK121046;TENOR=Os02t0658200-01;KEGG=Os02t0658200-01
Chr02	irgsp1_rep	five_prime_UTR	26617243	26617346	.	-	.	Parent=Os02t0658200-01
Chr02	irgsp1_rep	CDS	26617139	26617242	.	-	0	Parent=Os02t0658200-01
Chr02	irgsp1_rep	CDS	26616744	26617017	.	-	1	Parent=Os02t0658200-01
Chr02	irgsp1_rep	three_prime_UTR	26616524	26616743	.	-	.	Parent=Os02t0658200-01
Chr02	irgsp1_rep	mRNA	26620327	26621891	.	+	.	ID=Os02t0658300-01;Name=Os02t0658300-01;Locus_id=Os02g0658300;Note=Conserved hypothetical protein.;Transcript_evidence=AK073923 (DDBJ%2C Best hit);ORF_evidence=A2X7Z7 (UniProt);NIAS_FLcDNA=J033072L09;Expression=AK073923;TENOR=Os02t0658300-01;KEGG=Os02t0658300-01
Chr02	irgsp1_rep	five_prime_UTR	26620327	26620406	.	+	.	Parent=Os02t0658300-01
Chr02	irgsp1_rep	CDS	26620407	26620519	.	+	0	Parent=Os02t0658300-01
Chr02	irgsp1_rep	CDS	26620630	26620786	.	+	1	Parent=Os02t0658300-01
Chr02	irgsp1_rep	three_prime_UTR	26620787	26621891	.	+	.	Parent=Os02t0658300-01
Chr02	irgsp1_rep	mRNA	26625056	26627870	.	-	.	ID=Os02t0658400-01;Name=Os02t0658400-01;Locus_id=Os02g0658400;CGSNL Gene Symbol=REM0.1;CGSNL Gene Name=REMORIN 0.1;Oryzabase Gene Symbol Synonym(s)=OsREM0.1;Oryzabase Gene Name Synonym(s)=Remorin 0.1%2C remorin group 0 member 1;Note=Remorin%2C C-terminal domain containing protein.;Transcript_evidence=AK120166 (DDBJ%2C Best hit);ORF_evidence=B9F1H3 (UniProt);InterPro=Remorin%2C C-terminal (IPR005516);NIAS_FLcDNA=J013031J05;Oryzabase=20267;TENOR=Os02t0658400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	26627870	26627870	.	-	.	Parent=Os02t0658400-01
Chr02	irgsp1_rep	CDS	26627411	26627869	.	-	0	Parent=Os02t0658400-01
Chr02	irgsp1_rep	CDS	26626715	26626826	.	-	0	Parent=Os02t0658400-01
Chr02	irgsp1_rep	CDS	26626412	26626627	.	-	2	Parent=Os02t0658400-01
Chr02	irgsp1_rep	CDS	26626130	26626340	.	-	2	Parent=Os02t0658400-01
Chr02	irgsp1_rep	CDS	26625734	26625815	.	-	1	Parent=Os02t0658400-01
Chr02	irgsp1_rep	CDS	26625436	26625627	.	-	0	Parent=Os02t0658400-01
Chr02	irgsp1_rep	three_prime_UTR	26625056	26625435	.	-	.	Parent=Os02t0658400-01
Chr02	irgsp1_rep	mRNA	26628111	26632058	.	-	.	ID=Os02t0658500-01;Name=Os02t0658500-01;Locus_id=Os02g0658500;Oryzabase Gene Symbol Synonym(s)=Os_F0751;Note=Similar to Leucine Rich Repeat family protein.;Transcript_evidence=AK099591 (DDBJ%2C Best hit),AK107591 (DDBJ%2C Best hit);ORF_evidence=B6U0T1 (UniProt);NIAS_FLcDNA=J013043M11,002-131-A06;Oryzabase=17483;Expression=AK099591;TENOR=Os02t0658500-01;KEGG=Os02t0658500-01
Chr02	irgsp1_rep	five_prime_UTR	26631858	26632058	.	-	.	Parent=Os02t0658500-01
Chr02	irgsp1_rep	CDS	26630649	26631857	.	-	0	Parent=Os02t0658500-01
Chr02	irgsp1_rep	three_prime_UTR	26628111	26630648	.	-	.	Parent=Os02t0658500-01
Chr02	irgsp1_rep	mRNA	26638624	26639988	.	+	.	ID=Os02t0658600-00;Name=Os02t0658600-00;Locus_id=Os02g0658600;CGSNL Gene Symbol=EXPB14;CGSNL Gene Name=BETA-EXPANSIN 14;Oryzabase Gene Symbol Synonym(s)=OsEXPB14%2C osaEXPb1.18;Oryzabase Gene Name Synonym(s)=Expansin-B14%2C Beta-expansin-14;Note=Similar to Beta-expansin (Fragment).;Transcript_evidence=Q6H677 (UniProt);ORF_evidence=Q6H677 (UniProt);GO=Biological Process: sexual reproduction (GO:0019953),Cellular Component: extracellular region (GO:0005576);InterPro=Major pollen allergen Lol pI (IPR005795),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);Oryzabase=9346;TENOR=Os02t0658600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	26638624	26638789	.	+	0	Parent=Os02t0658600-00
Chr02	irgsp1_rep	CDS	26638899	26639011	.	+	2	Parent=Os02t0658600-00
Chr02	irgsp1_rep	CDS	26639152	26639345	.	+	0	Parent=Os02t0658600-00
Chr02	irgsp1_rep	CDS	26639640	26639988	.	+	1	Parent=Os02t0658600-00
Chr02	irgsp1_rep	mRNA	26639629	26639971	.	-	.	ID=Os02t0658651-00;Name=Os02t0658651-00;Locus_id=Os02g0658651;Note=Hypothetical protein.;Transcript_evidence=EU947703 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0658651-00
Chr02	irgsp1_rep	five_prime_UTR	26639971	26639971	.	-	.	Parent=Os02t0658651-00
Chr02	irgsp1_rep	CDS	26639629	26639970	.	-	0	Parent=Os02t0658651-00
Chr02	irgsp1_rep	mRNA	26648837	26650582	.	+	.	ID=Os02t0658800-01;Name=Os02t0658800-01;Locus_id=Os02g0658800;CGSNL Gene Symbol=EXPB11;CGSNL Gene Name=BETA-EXPANSIN 11;Oryzabase Gene Symbol Synonym(s)=OsEXPB11%2C osaEXPb1.20;Oryzabase Gene Name Synonym(s)=Expansin-B11%2C Beta-expansin-11;Note=Beta-expansin.;Transcript_evidence=AK059638 (DDBJ%2C Best hit);ORF_evidence=Q6H676 (UniProt);GO=Biological Process: sexual reproduction (GO:0019953),Cellular Component: extracellular region (GO:0005576);InterPro=Major pollen allergen Lol pI (IPR005795),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);NIAS_FLcDNA=001-031-B01;Oryzabase=9343;Expression=AK059638;TENOR=Os02t0658800-01;KEGG=Os02t0658800-01
Chr02	irgsp1_rep	five_prime_UTR	26648837	26648941	.	+	.	Parent=Os02t0658800-01
Chr02	irgsp1_rep	CDS	26648942	26649185	.	+	0	Parent=Os02t0658800-01
Chr02	irgsp1_rep	CDS	26649290	26649402	.	+	2	Parent=Os02t0658800-01
Chr02	irgsp1_rep	CDS	26649564	26649757	.	+	0	Parent=Os02t0658800-01
Chr02	irgsp1_rep	CDS	26649861	26650188	.	+	1	Parent=Os02t0658800-01
Chr02	irgsp1_rep	three_prime_UTR	26650189	26650582	.	+	.	Parent=Os02t0658800-01
Chr02	irgsp1_rep	mRNA	26649827	26650194	.	-	.	ID=Os02t0658850-00;Name=Os02t0658850-00;Locus_id=Os02g0658850;Note=Hypothetical protein.;Transcript_evidence=EU947703 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0658850-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	26649847	26650194	.	-	0	Parent=Os02t0658850-00
Chr02	irgsp1_rep	three_prime_UTR	26649827	26649846	.	-	.	Parent=Os02t0658850-00
Chr02	irgsp1_rep	mRNA	26663354	26667646	.	-	.	ID=Os02t0658900-01;Name=Os02t0658900-01;Locus_id=Os02g0658900;Note=Sec20 family protein.;Transcript_evidence=AK066526 (DDBJ%2C Best hit);ORF_evidence=NP_001150506.1 (RefSeq);InterPro=Sec20 (IPR005606);NIAS_FLcDNA=J013073N06;Expression=AK066526;TENOR=Os02t0658900-01;KEGG=Os02t0658900-01
Chr02	irgsp1_rep	five_prime_UTR	26667097	26667646	.	-	.	Parent=Os02t0658900-01
Chr02	irgsp1_rep	five_prime_UTR	26666111	26666118	.	-	.	Parent=Os02t0658900-01
Chr02	irgsp1_rep	CDS	26665827	26666110	.	-	0	Parent=Os02t0658900-01
Chr02	irgsp1_rep	CDS	26665668	26665737	.	-	1	Parent=Os02t0658900-01
Chr02	irgsp1_rep	CDS	26665502	26665557	.	-	0	Parent=Os02t0658900-01
Chr02	irgsp1_rep	CDS	26665126	26665201	.	-	1	Parent=Os02t0658900-01
Chr02	irgsp1_rep	CDS	26665002	26665038	.	-	0	Parent=Os02t0658900-01
Chr02	irgsp1_rep	CDS	26664776	26664890	.	-	2	Parent=Os02t0658900-01
Chr02	irgsp1_rep	CDS	26663475	26663688	.	-	1	Parent=Os02t0658900-01
Chr02	irgsp1_rep	three_prime_UTR	26663354	26663474	.	-	.	Parent=Os02t0658900-01
Chr02	irgsp1_rep	mRNA	26668796	26671144	.	+	.	ID=Os02t0659100-01;Name=Os02t0659100-01;Locus_id=Os02g0659100;CGSNL Gene Symbol=DLN62;CGSNL Gene Name=DLN REPRESSOR 62;Oryzabase Gene Symbol Synonym(s)=OsDLN62;Oryzabase Gene Name Synonym(s)=DLN repressor 62%2C DLN motif protein 62;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK107559 (DDBJ%2C Best hit);ORF_evidence=A2X802 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=002-130-B07;Oryzabase=23173;Expression=AK107559;TENOR=Os02t0659100-01;KEGG=Os02t0659100-01
Chr02	irgsp1_rep	five_prime_UTR	26668796	26668875	.	+	.	Parent=Os02t0659100-01
Chr02	irgsp1_rep	CDS	26668876	26670735	.	+	0	Parent=Os02t0659100-01
Chr02	irgsp1_rep	three_prime_UTR	26670736	26671144	.	+	.	Parent=Os02t0659100-01
Chr02	irgsp1_rep	mRNA	26676827	26676899	.	-	.	ID=Os02t0659301-00;Name=Os02t0659301-00;Locus_id=Os02g0659301;Note=Non-protein coding transcript.;Transcript_evidence=X06283 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0659301-00
Chr02	irgsp1_rep	exon	26676827	26676899	.	-	.	Parent=Os02t0659301-00
Chr02	irgsp1_rep	mRNA	26689426	26690900	.	+	.	ID=Os02t0659500-01;Name=Os02t0659500-01;Locus_id=Os02g0659500;CGSNL Gene Symbol=DLN63;CGSNL Gene Name=DLN REPRESSOR 63;Oryzabase Gene Symbol Synonym(s)=OsDLN63;Oryzabase Gene Name Synonym(s)=DLN repressor 63%2C DLN motif protein 63;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK064694 (DDBJ%2C Best hit);ORF_evidence=A2X803 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=002-116-F05;Oryzabase=23174;Expression=AK064694;TENOR=Os02t0659500-01;KEGG=Os02t0659500-01
Chr02	irgsp1_rep	five_prime_UTR	26689426	26689555	.	+	.	Parent=Os02t0659500-01
Chr02	irgsp1_rep	CDS	26689556	26690581	.	+	0	Parent=Os02t0659500-01
Chr02	irgsp1_rep	three_prime_UTR	26690582	26690900	.	+	.	Parent=Os02t0659500-01
Chr02	irgsp1_rep	mRNA	26698553	26701207	.	+	.	ID=Os02t0659600-01;Name=Os02t0659600-01;Locus_id=Os02g0659600;Note=Hypothetical conserved gene.;Transcript_evidence=AK242976 (DDBJ%2C Best hit);ORF_evidence=NP_001047642.1 (RefSeq);NIAS_FLcDNA=J090092M04;TENOR=Os02t0659600-01;KEGG=Os02t0659600-01
Chr02	irgsp1_rep	five_prime_UTR	26698553	26698752	.	+	.	Parent=Os02t0659600-01
Chr02	irgsp1_rep	CDS	26698753	26699094	.	+	0	Parent=Os02t0659600-01
Chr02	irgsp1_rep	three_prime_UTR	26699095	26701207	.	+	.	Parent=Os02t0659600-01
Chr02	irgsp1_rep	mRNA	26701872	26705647	.	-	.	ID=Os02t0659700-00;Name=Os02t0659700-00;Locus_id=Os02g0659700;Note=Similar to OSIGBa0143N19.8 protein.;Transcript_evidence=AK355145 (DDBJ);ORF_evidence=Q01IM6 (UniProt);InterPro=Thioesterase superfamily (IPR006683);TENOR=Os02t0659700-00
Chr02	irgsp1_rep	CDS	26705536	26705647	.	-	0	Parent=Os02t0659700-00
Chr02	irgsp1_rep	CDS	26705329	26705438	.	-	2	Parent=Os02t0659700-00
Chr02	irgsp1_rep	CDS	26703238	26703330	.	-	0	Parent=Os02t0659700-00
Chr02	irgsp1_rep	CDS	26701872	26701997	.	-	0	Parent=Os02t0659700-00
Chr02	irgsp1_rep	mRNA	26726617	26727204	.	+	.	ID=Os02t0660100-00;Name=Os02t0660100-00;Locus_id=Os02g0660100;Note=Hypothetical conserved gene.;Transcript_evidence=CT835324 (DDBJ%2C Best hit);ORF_evidence=NP_001047643.1 (RefSeq);TENOR=Os02t0660100-00;KEGG=Os02t0660100-00
Chr02	irgsp1_rep	five_prime_UTR	26726617	26726832	.	+	.	Parent=Os02t0660100-00
Chr02	irgsp1_rep	CDS	26726833	26727138	.	+	0	Parent=Os02t0660100-00
Chr02	irgsp1_rep	three_prime_UTR	26727139	26727204	.	+	.	Parent=Os02t0660100-00
Chr02	irgsp1_rep	mRNA	26754927	26756492	.	-	.	ID=Os02t0660800-00;Name=Os02t0660800-00;Locus_id=Os02g0660800;Note=Similar to OSIGBa0143N19.7 protein.;Transcript_evidence=AK355145 (DDBJ);ORF_evidence=Q01IM7 (UniProt);InterPro=Thioesterase superfamily (IPR006683);TENOR=Os02t0660800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	26756342	26756492	.	-	0	Parent=Os02t0660800-00
Chr02	irgsp1_rep	CDS	26756147	26756256	.	-	2	Parent=Os02t0660800-00
Chr02	irgsp1_rep	CDS	26755365	26755460	.	-	0	Parent=Os02t0660800-00
Chr02	irgsp1_rep	CDS	26754927	26755043	.	-	0	Parent=Os02t0660800-00
Chr02	irgsp1_rep	mRNA	26762824	26766482	.	-	.	ID=Os02t0661000-00;Name=Os02t0661000-00;Locus_id=Os02g0661000;Note=Similar to peroxisomal biogenesis factor 19.;Transcript_evidence=CT835406 (DDBJ%2C Best hit);ORF_evidence=NP_001149245.1 (RefSeq);GO=Cellular Component: peroxisome (GO:0005777);InterPro=Pex19 protein (IPR006708);TENOR=Os02t0661000-00;KEGG=Os02t0661000-00
Chr02	irgsp1_rep	five_prime_UTR	26766343	26766482	.	-	.	Parent=Os02t0661000-00
Chr02	irgsp1_rep	CDS	26766239	26766342	.	-	0	Parent=Os02t0661000-00
Chr02	irgsp1_rep	CDS	26765824	26766139	.	-	1	Parent=Os02t0661000-00
Chr02	irgsp1_rep	CDS	26764466	26764782	.	-	0	Parent=Os02t0661000-00
Chr02	irgsp1_rep	CDS	26763082	26763127	.	-	1	Parent=Os02t0661000-00
Chr02	irgsp1_rep	three_prime_UTR	26762824	26763081	.	-	.	Parent=Os02t0661000-00
Chr02	irgsp1_rep	mRNA	26762885	26766480	.	+	.	ID=Os02t0661050-01;Name=Os02t0661050-01;Locus_id=Os02g0661050;Note=Hypothetical gene.;Transcript_evidence=AK288989 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090087E23;TENOR=Os02t0661050-01
Chr02	irgsp1_rep	five_prime_UTR	26762885	26763127	.	+	.	Parent=Os02t0661050-01
Chr02	irgsp1_rep	five_prime_UTR	26764466	26764768	.	+	.	Parent=Os02t0661050-01
Chr02	irgsp1_rep	CDS	26764769	26764782	.	+	0	Parent=Os02t0661050-01
Chr02	irgsp1_rep	CDS	26765824	26766139	.	+	1	Parent=Os02t0661050-01
Chr02	irgsp1_rep	CDS	26766239	26766480	.	+	0	Parent=Os02t0661050-01
Chr02	irgsp1_rep	mRNA	26767607	26771623	.	-	.	ID=Os02t0661100-01;Name=Os02t0661100-01;Locus_id=Os02g0661100;RAP-DB Gene Symbol Synonym(s)=OsTPP1;RAP-DB Gene Name Synonym(s)=Trehalose-6-phosphate phosphatase 1;CGSNL Gene Symbol=TPP1;CGSNL Gene Name=TREHALOSE-6-PHOSPHATE PHOSHPHATASE 1;Oryzabase Gene Symbol Synonym(s)=OsTPP1%2C OsTPS;Oryzabase Gene Name Synonym(s)=Trehalose-6-phosphate phosphatase 1%2C trehalose 6-P synthase;Note=Trehalose-6-phosphate phosphatase%2C Trehalose biosynthesis%2C Chilling tolerance;Transcript_evidence=AK103391;ORF_evidence=Q75WV3;GO=Biological Process: trehalose biosynthetic process (GO:0005992),Molecular Function: catalytic activity (GO:0003824);InterPro=HAD-like superfamily (IPR036412),HAD superfamily (IPR023214),HAD-superfamily hydrolase%2C subfamily IIB (IPR006379),Trehalose-phosphatase (IPR003337);NIAS_FLcDNA=J033127L03;Manual Curation=April 18%2C 2019;Literature_PMID=29257952,16240171,DOI:10.5511/plantbiotechnology.11.0421a;Oryzabase=6270;Expression=AK103391;TENOR=Os02t0661100-01;KEGG=Os02t0661100-01
Chr02	irgsp1_rep	five_prime_UTR	26771550	26771623	.	-	.	Parent=Os02t0661100-01
Chr02	irgsp1_rep	five_prime_UTR	26770273	26770381	.	-	.	Parent=Os02t0661100-01
Chr02	irgsp1_rep	five_prime_UTR	26770011	26770180	.	-	.	Parent=Os02t0661100-01
Chr02	irgsp1_rep	CDS	26769729	26770010	.	-	0	Parent=Os02t0661100-01
Chr02	irgsp1_rep	CDS	26769471	26769611	.	-	0	Parent=Os02t0661100-01
Chr02	irgsp1_rep	CDS	26769311	26769382	.	-	0	Parent=Os02t0661100-01
Chr02	irgsp1_rep	CDS	26769102	26769200	.	-	0	Parent=Os02t0661100-01
Chr02	irgsp1_rep	CDS	26768927	26768983	.	-	0	Parent=Os02t0661100-01
Chr02	irgsp1_rep	CDS	26768653	26768754	.	-	0	Parent=Os02t0661100-01
Chr02	irgsp1_rep	CDS	26768480	26768557	.	-	0	Parent=Os02t0661100-01
Chr02	irgsp1_rep	CDS	26768228	26768368	.	-	0	Parent=Os02t0661100-01
Chr02	irgsp1_rep	CDS	26768040	26768132	.	-	0	Parent=Os02t0661100-01
Chr02	irgsp1_rep	CDS	26767906	26767956	.	-	0	Parent=Os02t0661100-01
Chr02	irgsp1_rep	three_prime_UTR	26767607	26767905	.	-	.	Parent=Os02t0661100-01
Chr02	irgsp1_rep	mRNA	26767607	26769929	.	-	.	ID=Os02t0661100-02;Name=Os02t0661100-02;Locus_id=Os02g0661100;CGSNL Gene Symbol=TPP1;CGSNL Gene Name=TREHALOSE-6-PHOSPHATE PHOSHPHATASE 1;Oryzabase Gene Symbol Synonym(s)=OsTPP1%2C OsTPS;Oryzabase Gene Name Synonym(s)=Trehalose-6-phosphate phosphatase 1%2C trehalose 6-P synthase;Note=Similar to Trehalose-phosphate phosphatase.;Transcript_evidence=AK059390 (DDBJ%2C Best hit);ORF_evidence=Q3ZTF5 (UniProt);GO=Biological Process: trehalose biosynthetic process (GO:0005992),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Trehalose-phosphatase (IPR003337),HAD-superfamily hydrolase%2C subfamily IIB (IPR006379),HAD-like domain (IPR023214);NIAS_FLcDNA=001-026-H06;Oryzabase=6270;Expression=AK059390;TENOR=Os02t0661100-02;KEGG=Os02t0661100-02
Chr02	irgsp1_rep	five_prime_UTR	26769927	26769929	.	-	.	Parent=Os02t0661100-02
Chr02	irgsp1_rep	CDS	26769729	26769926	.	-	0	Parent=Os02t0661100-02
Chr02	irgsp1_rep	CDS	26769471	26769611	.	-	0	Parent=Os02t0661100-02
Chr02	irgsp1_rep	CDS	26769311	26769382	.	-	0	Parent=Os02t0661100-02
Chr02	irgsp1_rep	CDS	26769102	26769200	.	-	0	Parent=Os02t0661100-02
Chr02	irgsp1_rep	CDS	26768927	26768983	.	-	0	Parent=Os02t0661100-02
Chr02	irgsp1_rep	CDS	26768653	26768754	.	-	0	Parent=Os02t0661100-02
Chr02	irgsp1_rep	CDS	26768480	26768557	.	-	0	Parent=Os02t0661100-02
Chr02	irgsp1_rep	CDS	26768228	26768368	.	-	0	Parent=Os02t0661100-02
Chr02	irgsp1_rep	CDS	26768040	26768132	.	-	0	Parent=Os02t0661100-02
Chr02	irgsp1_rep	CDS	26767906	26767956	.	-	0	Parent=Os02t0661100-02
Chr02	irgsp1_rep	three_prime_UTR	26767607	26767905	.	-	.	Parent=Os02t0661100-02
Chr02	irgsp1_rep	mRNA	26772690	26773935	.	-	.	ID=Os02t0661200-01;Name=Os02t0661200-01;Locus_id=Os02g0661200;Note=Conserved hypothetical protein.;Transcript_evidence=AK242491 (DDBJ%2C Best hit);ORF_evidence=NP_001173104.1 (RefSeq);NIAS_FLcDNA=J080306O03;TENOR=Os02t0661200-01;KEGG=Os02t0661200-01
Chr02	irgsp1_rep	five_prime_UTR	26773639	26773935	.	-	.	Parent=Os02t0661200-01
Chr02	irgsp1_rep	CDS	26773489	26773638	.	-	0	Parent=Os02t0661200-01
Chr02	irgsp1_rep	three_prime_UTR	26772690	26773488	.	-	.	Parent=Os02t0661200-01
Chr02	irgsp1_rep	mRNA	26779329	26780263	.	-	.	ID=Os02t0661300-01;Name=Os02t0661300-01;Locus_id=Os02g0661300;RAP-DB Gene Symbol Synonym(s)=OsINP1;RAP-DB Gene Name Synonym(s)=INAPERTURATE POLLEN1;CGSNL Gene Symbol=INP1;CGSNL Gene Name=INAPERTURATE POLLEN 1;Oryzabase Gene Symbol Synonym(s)=OsINP1;Oryzabase Gene Name Synonym(s)=INAPERTURATE POLLEN1;Note=Homologue of Arabidopsis INP1%2C Regulation of pollen aperture formation;Transcript_evidence=AK106503;ORF_evidence=Q6H694;GO=Biological Process: transcription%2C DNA-templated (GO:0006351),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Transcription factor TGA like domain (IPR025422);NIAS_FLcDNA=002-105-F06;Manual Curation=April 20%2C 2020;Literature_PMID=32284546;Oryzabase=23585;Expression=AK106503;TENOR=Os02t0661300-01;KEGG=Os02t0661300-01
Chr02	irgsp1_rep	five_prime_UTR	26780185	26780263	.	-	.	Parent=Os02t0661300-01
Chr02	irgsp1_rep	CDS	26779486	26780184	.	-	0	Parent=Os02t0661300-01
Chr02	irgsp1_rep	three_prime_UTR	26779329	26779485	.	-	.	Parent=Os02t0661300-01
Chr02	irgsp1_rep	mRNA	26781596	26782633	.	-	.	ID=Os02t0661400-00;Name=Os02t0661400-00;Locus_id=Os02g0661400;Note=Protein of unknown function DUF597 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6H6M4 (UniProt);InterPro=Protein of unknown function DUF597 (IPR006734);TENOR=Os02t0661400-00
Chr02	irgsp1_rep	CDS	26782448	26782633	.	-	0	Parent=Os02t0661400-00
Chr02	irgsp1_rep	CDS	26782228	26782299	.	-	0	Parent=Os02t0661400-00
Chr02	irgsp1_rep	CDS	26781965	26782156	.	-	0	Parent=Os02t0661400-00
Chr02	irgsp1_rep	CDS	26781596	26781826	.	-	0	Parent=Os02t0661400-00
Chr02	irgsp1_rep	mRNA	26784533	26788011	.	+	.	ID=Os02t0661500-01;Name=Os02t0661500-01;Locus_id=Os02g0661500;Oryzabase Gene Symbol Synonym(s)=OsSTA69;Note=Non-protein coding transcript.;Transcript_evidence=AK099408 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013002M05;Oryzabase=19370;TENOR=Os02t0661500-01
Chr02	irgsp1_rep	exon	26784533	26784802	.	+	.	Parent=Os02t0661500-01
Chr02	irgsp1_rep	exon	26784894	26785772	.	+	.	Parent=Os02t0661500-01
Chr02	irgsp1_rep	exon	26785922	26786072	.	+	.	Parent=Os02t0661500-01
Chr02	irgsp1_rep	exon	26786251	26786477	.	+	.	Parent=Os02t0661500-01
Chr02	irgsp1_rep	exon	26786614	26788011	.	+	.	Parent=Os02t0661500-01
Chr02	irgsp1_rep	mRNA	26784534	26788011	.	+	.	ID=Os02t0661500-02;Name=Os02t0661500-02;Locus_id=Os02g0661500;Oryzabase Gene Symbol Synonym(s)=OsSTA69;Note=Hypothetical protein.;Transcript_evidence=AK067613 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013112F20;Oryzabase=19370;Expression=AK067613;TENOR=Os02t0661500-02;KEGG=Os02t0661500-02
Chr02	irgsp1_rep	five_prime_UTR	26784534	26784680	.	+	.	Parent=Os02t0661500-02
Chr02	irgsp1_rep	five_prime_UTR	26784894	26785691	.	+	.	Parent=Os02t0661500-02
Chr02	irgsp1_rep	CDS	26785692	26786060	.	+	0	Parent=Os02t0661500-02
Chr02	irgsp1_rep	three_prime_UTR	26786061	26786072	.	+	.	Parent=Os02t0661500-02
Chr02	irgsp1_rep	three_prime_UTR	26786251	26786613	.	+	.	Parent=Os02t0661500-02
Chr02	irgsp1_rep	three_prime_UTR	26786710	26788011	.	+	.	Parent=Os02t0661500-02
Chr02	irgsp1_rep	mRNA	26784541	26787234	.	+	.	ID=Os02t0661500-03;Name=Os02t0661500-03;Locus_id=Os02g0661500;Oryzabase Gene Symbol Synonym(s)=OsSTA69;Note=Hypothetical protein.;Transcript_evidence=AK068317 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013148J01;Oryzabase=19370;Expression=AK068317;TENOR=Os02t0661500-03;KEGG=Os02t0661500-03
Chr02	irgsp1_rep	five_prime_UTR	26784541	26784802	.	+	.	Parent=Os02t0661500-03
Chr02	irgsp1_rep	five_prime_UTR	26784894	26785691	.	+	.	Parent=Os02t0661500-03
Chr02	irgsp1_rep	CDS	26785692	26786060	.	+	0	Parent=Os02t0661500-03
Chr02	irgsp1_rep	three_prime_UTR	26786061	26786072	.	+	.	Parent=Os02t0661500-03
Chr02	irgsp1_rep	three_prime_UTR	26786392	26786613	.	+	.	Parent=Os02t0661500-03
Chr02	irgsp1_rep	three_prime_UTR	26786710	26787234	.	+	.	Parent=Os02t0661500-03
Chr02	irgsp1_rep	mRNA	26789959	26790911	.	-	.	ID=Os02t0661600-00;Name=Os02t0661600-00;Locus_id=Os02g0661600;Note=Conserved hypothetical protein.;Transcript_evidence=AK375769 (DDBJ);ORF_evidence=Q6H6M2 (UniProt);TENOR=Os02t0661600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	26789991	26790911	.	-	0	Parent=Os02t0661600-00
Chr02	irgsp1_rep	three_prime_UTR	26789959	26789990	.	-	.	Parent=Os02t0661600-00
Chr02	irgsp1_rep	mRNA	26797325	26799208	.	+	.	ID=Os02t0661800-01;Name=Os02t0661800-01;Locus_id=Os02g0661800;Note=Phosphatidic acid phosphatase type 2/haloperoxidase domain containing protein.;Transcript_evidence=AK068761 (DDBJ%2C Best hit);ORF_evidence=B8AGC4 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824);InterPro=Phosphatidic acid phosphatase type 2/haloperoxidase (IPR000326),Phosphatidic acid phosphatase/chloroperoxidase%2C N-terminal (IPR016118);NIAS_FLcDNA=J013163P22;Expression=AK068761;TENOR=Os02t0661800-01;KEGG=Os02t0661800-01
Chr02	irgsp1_rep	five_prime_UTR	26797325	26797395	.	+	.	Parent=Os02t0661800-01
Chr02	irgsp1_rep	CDS	26797396	26798013	.	+	0	Parent=Os02t0661800-01
Chr02	irgsp1_rep	three_prime_UTR	26798014	26798481	.	+	.	Parent=Os02t0661800-01
Chr02	irgsp1_rep	three_prime_UTR	26798581	26798665	.	+	.	Parent=Os02t0661800-01
Chr02	irgsp1_rep	three_prime_UTR	26798745	26799208	.	+	.	Parent=Os02t0661800-01
Chr02	irgsp1_rep	mRNA	26799675	26802249	.	+	.	ID=Os02t0661900-01;Name=Os02t0661900-01;Locus_id=Os02g0661900;Note=Similar to OSIGBa0143N19.13 protein.;Transcript_evidence=AK068742 (DDBJ%2C Best hit);ORF_evidence=B9F1H8 (UniProt);GO=Molecular Function: structural molecule activity (GO:0005198);InterPro=Major sperm protein (IPR000535),PapD-like (IPR008962);NIAS_FLcDNA=J013164F22;Expression=AK068742;TENOR=Os02t0661900-01;KEGG=Os02t0661900-01
Chr02	irgsp1_rep	five_prime_UTR	26799675	26800093	.	+	.	Parent=Os02t0661900-01
Chr02	irgsp1_rep	CDS	26800094	26800142	.	+	0	Parent=Os02t0661900-01
Chr02	irgsp1_rep	CDS	26800240	26800310	.	+	2	Parent=Os02t0661900-01
Chr02	irgsp1_rep	CDS	26800417	26800539	.	+	0	Parent=Os02t0661900-01
Chr02	irgsp1_rep	three_prime_UTR	26800540	26800711	.	+	.	Parent=Os02t0661900-01
Chr02	irgsp1_rep	three_prime_UTR	26800797	26800958	.	+	.	Parent=Os02t0661900-01
Chr02	irgsp1_rep	three_prime_UTR	26801038	26801085	.	+	.	Parent=Os02t0661900-01
Chr02	irgsp1_rep	three_prime_UTR	26801476	26802249	.	+	.	Parent=Os02t0661900-01
Chr02	irgsp1_rep	mRNA	26799907	26802318	.	+	.	ID=Os02t0661900-02;Name=Os02t0661900-02;Locus_id=Os02g0661900;Note=Similar to Vesicle-associated membrane protein-associated protein B/C (VAMP- associated protein B/C) (VAMP-B/VAMP-C) (VAP-B/VAP-C). Splice isoform 2.;Transcript_evidence=AK061447 (DDBJ%2C Best hit);ORF_evidence=NP_567153.1 (RefSeq);GO=Molecular Function: structural molecule activity (GO:0005198);InterPro=Major sperm protein (IPR000535),PapD-like (IPR008962);NIAS_FLcDNA=006-307-D10;Expression=AK061447;TENOR=Os02t0661900-02;KEGG=Os02t0661900-02
Chr02	irgsp1_rep	five_prime_UTR	26799907	26800093	.	+	.	Parent=Os02t0661900-02
Chr02	irgsp1_rep	CDS	26800094	26800142	.	+	0	Parent=Os02t0661900-02
Chr02	irgsp1_rep	CDS	26800240	26800310	.	+	2	Parent=Os02t0661900-02
Chr02	irgsp1_rep	CDS	26800417	26800498	.	+	0	Parent=Os02t0661900-02
Chr02	irgsp1_rep	CDS	26800596	26800711	.	+	2	Parent=Os02t0661900-02
Chr02	irgsp1_rep	CDS	26800802	26800804	.	+	0	Parent=Os02t0661900-02
Chr02	irgsp1_rep	three_prime_UTR	26800805	26800958	.	+	.	Parent=Os02t0661900-02
Chr02	irgsp1_rep	three_prime_UTR	26801038	26801085	.	+	.	Parent=Os02t0661900-02
Chr02	irgsp1_rep	three_prime_UTR	26801882	26802318	.	+	.	Parent=Os02t0661900-02
Chr02	irgsp1_rep	mRNA	26804988	26805820	.	+	.	ID=Os02t0662000-01;Name=Os02t0662000-01;Locus_id=Os02g0662000;Oryzabase Gene Symbol Synonym(s)=RCc3%2C OsHyPRP01%2C HyP/GRP01%2C OsHyPRP1%2C HyP/GRP1%2C OsRcc3%2C HyPRP1;Oryzabase Gene Name Synonym(s)=root-specific RCc3%2C hybrid proline- or glycine-rich protein 1%2C Hybrid Proline-Rich Protein 1;Note=RCc3 protein.;Transcript_evidence=AK109149 (DDBJ%2C Best hit);ORF_evidence=Q40721 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=002-155-F07;Oryzabase=10211;Expression=AK109149;TENOR=Os02t0662000-01;KEGG=Os02t0662000-01
Chr02	irgsp1_rep	five_prime_UTR	26804988	26805086	.	+	.	Parent=Os02t0662000-01
Chr02	irgsp1_rep	CDS	26805087	26805488	.	+	0	Parent=Os02t0662000-01
Chr02	irgsp1_rep	three_prime_UTR	26805489	26805820	.	+	.	Parent=Os02t0662000-01
Chr02	irgsp1_rep	mRNA	26814637	26815393	.	+	.	ID=Os02t0662100-01;Name=Os02t0662100-01;Locus_id=Os02g0662100;CGSNL Gene Symbol=HYPRP2;CGSNL Gene Name=HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsHyPRP02%2C HyP/GRP02%2C OsHyPRP2%2C HyP/GRP2%2C HyPRP2;Oryzabase Gene Name Synonym(s)=hybrid proline- or glycine-rich protein 2%2C Hybrid Proline-Rich Protein 2;Note=Similar to Tfm5 protein.;Transcript_evidence=AK058218 (DDBJ%2C Best hit);ORF_evidence=NP_001148300.1 (RefSeq);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=001-010-F04;Oryzabase=18604;Expression=AK058218;TENOR=Os02t0662100-01;KEGG=Os02t0662100-01
Chr02	irgsp1_rep	five_prime_UTR	26814637	26814719	.	+	.	Parent=Os02t0662100-01
Chr02	irgsp1_rep	CDS	26814720	26815106	.	+	0	Parent=Os02t0662100-01
Chr02	irgsp1_rep	three_prime_UTR	26815107	26815393	.	+	.	Parent=Os02t0662100-01
Chr02	irgsp1_rep	mRNA	26820434	26823384	.	+	.	ID=Os02t0662200-01;Name=Os02t0662200-01;Locus_id=Os02g0662200;Note=YbaK/aminoacyl-tRNA synthetase associated region domain containing protein.;Transcript_evidence=AK063236 (DDBJ%2C Best hit);ORF_evidence=NP_001147430.1 (RefSeq);InterPro=YbaK/aminoacyl-tRNA synthetase-associated domain (IPR007214);NIAS_FLcDNA=001-112-F10;Expression=AK063236;TENOR=Os02t0662200-01;KEGG=Os02t0662200-01
Chr02	irgsp1_rep	five_prime_UTR	26820434	26820447	.	+	.	Parent=Os02t0662200-01
Chr02	irgsp1_rep	CDS	26820448	26820750	.	+	0	Parent=Os02t0662200-01
Chr02	irgsp1_rep	CDS	26821518	26821595	.	+	0	Parent=Os02t0662200-01
Chr02	irgsp1_rep	CDS	26821675	26821759	.	+	0	Parent=Os02t0662200-01
Chr02	irgsp1_rep	CDS	26822495	26822583	.	+	2	Parent=Os02t0662200-01
Chr02	irgsp1_rep	CDS	26822946	26823083	.	+	0	Parent=Os02t0662200-01
Chr02	irgsp1_rep	three_prime_UTR	26823084	26823384	.	+	.	Parent=Os02t0662200-01
Chr02	irgsp1_rep	mRNA	26823636	26825873	.	-	.	ID=Os02t0662300-01;Name=Os02t0662300-01;Locus_id=Os02g0662300;Note=Conserved hypothetical protein.;Transcript_evidence=AK121727 (DDBJ%2C Best hit);ORF_evidence=B8AGC6 (UniProt);NIAS_FLcDNA=J033082C10;Expression=AK121727;TENOR=Os02t0662300-01;KEGG=Os02t0662300-01
Chr02	irgsp1_rep	five_prime_UTR	26825694	26825873	.	-	.	Parent=Os02t0662300-01
Chr02	irgsp1_rep	CDS	26825514	26825693	.	-	0	Parent=Os02t0662300-01
Chr02	irgsp1_rep	CDS	26825204	26825437	.	-	0	Parent=Os02t0662300-01
Chr02	irgsp1_rep	three_prime_UTR	26824771	26825203	.	-	.	Parent=Os02t0662300-01
Chr02	irgsp1_rep	three_prime_UTR	26823636	26824643	.	-	.	Parent=Os02t0662300-01
Chr02	irgsp1_rep	mRNA	26841588	26844306	.	+	.	ID=Os02t0662700-01;Name=Os02t0662700-01;Locus_id=Os02g0662700;RAP-DB Gene Symbol Synonym(s)=OsHAM1%2C OsSCL1;RAP-DB Gene Name Synonym(s)=hairy meristem 1%2C SCARECROW-LIKE 1;CGSNL Gene Symbol=HAM1;CGSNL Gene Name=HAIRY MERISTEM 1;Oryzabase Gene Symbol Synonym(s)=OsSCL1%2C SCL1%2C OsHAM1%2C OsGRAS-9%2C OsGRAS-9%2C GRAS-9%2C GRAS9;Oryzabase Gene Name Synonym(s)=SCARECROW-LIKE 1%2C hairy meristem 1%2C GRAS protein 9;Note=GRAS (GAI-RGA-SCR) plant-specific transcription factor%2C Maintenance of shoot apical meristem indeterminacy%2C Regulation of vegetative to reproductive phase change;Transcript_evidence=AK072900;ORF_evidence=Q6H6L3;InterPro=Transcription factor GRAS (IPR005202);NIAS_FLcDNA=J023145A02;Manual Curation=December 25%2C 2017;Literature_PMID=26023934;Oryzabase=13833;Expression=AK072900;TENOR=Os02t0662700-01;KEGG=Os02t0662700-01;Subcellular location=nucleus (GO:0005634)
Chr02	irgsp1_rep	five_prime_UTR	26841588	26841825	.	+	.	Parent=Os02t0662700-01
Chr02	irgsp1_rep	CDS	26841826	26843955	.	+	0	Parent=Os02t0662700-01
Chr02	irgsp1_rep	three_prime_UTR	26843956	26844306	.	+	.	Parent=Os02t0662700-01
Chr02	irgsp1_rep	mRNA	26841981	26844331	.	+	.	ID=Os02t0662700-02;Name=Os02t0662700-02;Locus_id=Os02g0662700;CGSNL Gene Symbol=HAM1;CGSNL Gene Name=HAIRY MERISTEM 1;Oryzabase Gene Symbol Synonym(s)=OsSCL1%2C SCL1%2C OsHAM1%2C OsGRAS-9%2C OsGRAS-9%2C GRAS-9%2C GRAS9;Oryzabase Gene Name Synonym(s)=SCARECROW-LIKE 1%2C hairy meristem 1%2C GRAS protein 9;Note=Similar to Scl1 protein (Fragment).;Transcript_evidence=AK066248 (DDBJ%2C Best hit),AK120317 (DDBJ%2C Best hit);ORF_evidence=Q9ZTB0 (UniProt);InterPro=Transcription factor GRAS (IPR005202);NIAS_FLcDNA=J013055O11,J013055O12;Oryzabase=13833;Expression=AK066248;TENOR=Os02t0662700-02;KEGG=Os02t0662700-02
Chr02	irgsp1_rep	five_prime_UTR	26841981	26842263	.	+	.	Parent=Os02t0662700-02
Chr02	irgsp1_rep	five_prime_UTR	26842314	26842359	.	+	.	Parent=Os02t0662700-02
Chr02	irgsp1_rep	CDS	26842360	26843955	.	+	0	Parent=Os02t0662700-02
Chr02	irgsp1_rep	three_prime_UTR	26843956	26844331	.	+	.	Parent=Os02t0662700-02
Chr02	irgsp1_rep	mRNA	26841960	26843961	.	-	.	ID=Os02t0662900-00;Name=Os02t0662900-00;Locus_id=Os02g0662900;Note=Hypothetical protein.;Transcript_evidence=AK360819 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0662900-00
Chr02	irgsp1_rep	five_prime_UTR	26843614	26843961	.	-	.	Parent=Os02t0662900-00
Chr02	irgsp1_rep	CDS	26843116	26843613	.	-	0	Parent=Os02t0662900-00
Chr02	irgsp1_rep	three_prime_UTR	26842729	26843115	.	-	.	Parent=Os02t0662900-00
Chr02	irgsp1_rep	three_prime_UTR	26842426	26842637	.	-	.	Parent=Os02t0662900-00
Chr02	irgsp1_rep	three_prime_UTR	26841960	26842296	.	-	.	Parent=Os02t0662900-00
Chr02	irgsp1_rep	mRNA	26852082	26854948	.	+	.	ID=Os02t0663100-01;Name=Os02t0663100-01;Locus_id=Os02g0663100;RAP-DB Gene Symbol Synonym(s)=OsHAM2;RAP-DB Gene Name Synonym(s)=hairy meristem 2;CGSNL Gene Symbol=HAM2;CGSNL Gene Name=HAIRY MERISTEM 2;Oryzabase Gene Symbol Synonym(s)=OsHAM2%2C OsGRAS-8%2C OsGRAS8%2C GRAS-8%2C GRAS8;Oryzabase Gene Name Synonym(s)=hairy meristem 2%2C GRAS protein 8;Note=GRAS (GAI-RGA-SCR) plant-specific transcription factor%2C Maintenance of shoot apical meristem indeterminacy%2C Regulation of vegetative to reproductive phase change;Transcript_evidence=AK101035;ORF_evidence=Q6H6L0;InterPro=Transcription factor GRAS (IPR005202);NIAS_FLcDNA=J023150P14;Manual Curation=December 25%2C 2017;Literature_PMID=26023934;Oryzabase=19828;Expression=AK101035;TENOR=Os02t0663100-01;KEGG=Os02t0663100-01;Subcellular location=nucleus (GO:0005634)
Chr02	irgsp1_rep	five_prime_UTR	26852082	26852476	.	+	.	Parent=Os02t0663100-01
Chr02	irgsp1_rep	CDS	26852477	26854624	.	+	0	Parent=Os02t0663100-01
Chr02	irgsp1_rep	three_prime_UTR	26854625	26854948	.	+	.	Parent=Os02t0663100-01
Chr02	irgsp1_rep	mRNA	26853143	26854630	.	-	.	ID=Os02t0663200-00;Name=Os02t0663200-00;Locus_id=Os02g0663200;Note=Hypothetical protein.;Transcript_evidence=AK360819 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0663200-00
Chr02	irgsp1_rep	five_prime_UTR	26853869	26854630	.	-	.	Parent=Os02t0663200-00
Chr02	irgsp1_rep	CDS	26853446	26853868	.	-	0	Parent=Os02t0663200-00
Chr02	irgsp1_rep	three_prime_UTR	26853444	26853445	.	-	.	Parent=Os02t0663200-00
Chr02	irgsp1_rep	three_prime_UTR	26853143	26853371	.	-	.	Parent=Os02t0663200-00
Chr02	irgsp1_rep	mRNA	26867009	26886180	.	-	.	ID=Os02t0663300-00;Name=Os02t0663300-00;Locus_id=Os02g0663300;Oryzabase Gene Symbol Synonym(s)=OsWD40-48%2C OsSTA70;Note=BEACH domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6EUI5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BEACH domain (IPR000409),WD40 repeat (IPR001680),Concanavalin A-like lectin/glucanase (IPR008985),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),PH-BEACH domain (IPR023362);Oryzabase=10729;TENOR=Os02t0663300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	26884497	26886180	.	-	0	Parent=Os02t0663300-00
Chr02	irgsp1_rep	CDS	26882981	26883768	.	-	2	Parent=Os02t0663300-00
Chr02	irgsp1_rep	CDS	26881706	26882395	.	-	0	Parent=Os02t0663300-00
Chr02	irgsp1_rep	CDS	26881003	26881137	.	-	0	Parent=Os02t0663300-00
Chr02	irgsp1_rep	CDS	26880659	26880763	.	-	0	Parent=Os02t0663300-00
Chr02	irgsp1_rep	CDS	26880227	26880303	.	-	0	Parent=Os02t0663300-00
Chr02	irgsp1_rep	CDS	26879757	26879838	.	-	1	Parent=Os02t0663300-00
Chr02	irgsp1_rep	CDS	26879375	26879462	.	-	0	Parent=Os02t0663300-00
Chr02	irgsp1_rep	CDS	26879059	26879123	.	-	2	Parent=Os02t0663300-00
Chr02	irgsp1_rep	CDS	26878661	26878993	.	-	0	Parent=Os02t0663300-00
Chr02	irgsp1_rep	CDS	26877329	26877948	.	-	0	Parent=Os02t0663300-00
Chr02	irgsp1_rep	CDS	26875992	26876076	.	-	1	Parent=Os02t0663300-00
Chr02	irgsp1_rep	CDS	26875081	26875275	.	-	0	Parent=Os02t0663300-00
Chr02	irgsp1_rep	CDS	26873943	26874491	.	-	0	Parent=Os02t0663300-00
Chr02	irgsp1_rep	CDS	26873064	26873507	.	-	0	Parent=Os02t0663300-00
Chr02	irgsp1_rep	CDS	26872522	26872676	.	-	0	Parent=Os02t0663300-00
Chr02	irgsp1_rep	CDS	26872266	26872335	.	-	1	Parent=Os02t0663300-00
Chr02	irgsp1_rep	CDS	26872088	26872171	.	-	0	Parent=Os02t0663300-00
Chr02	irgsp1_rep	CDS	26871946	26872002	.	-	0	Parent=Os02t0663300-00
Chr02	irgsp1_rep	CDS	26871630	26871716	.	-	0	Parent=Os02t0663300-00
Chr02	irgsp1_rep	CDS	26870813	26870897	.	-	0	Parent=Os02t0663300-00
Chr02	irgsp1_rep	CDS	26870622	26870742	.	-	2	Parent=Os02t0663300-00
Chr02	irgsp1_rep	CDS	26868562	26868704	.	-	1	Parent=Os02t0663300-00
Chr02	irgsp1_rep	CDS	26867447	26868246	.	-	2	Parent=Os02t0663300-00
Chr02	irgsp1_rep	CDS	26867009	26867068	.	-	0	Parent=Os02t0663300-00
Chr02	irgsp1_rep	mRNA	26919906	26922028	.	-	.	ID=Os02t0663800-01;Name=Os02t0663800-01;Locus_id=Os02g0663800;RAP-DB Gene Symbol Synonym(s)=OsADF1;RAP-DB Gene Name Synonym(s)=actin depolymerizing factor 1;CGSNL Gene Symbol=ADF1;CGSNL Gene Name=ACTIN DEPOLYMERIZING FACTOR 1;Oryzabase Gene Symbol Synonym(s)=OsADF1;Oryzabase Gene Name Synonym(s)=actin depolymerizing factor 1;Note=Actin depolymerizing factor%2C Actin-binding protein%2C Abiotic stress response;Transcript_evidence=AK069605;ORF_evidence=Q6EUH7;GO=Biological Process: actin filament depolymerization (GO:0030042),Molecular Function: actin binding (GO:0003779),Cellular Component: intracellular (GO:0005622),Cellular Component: actin cytoskeleton (GO:0015629);InterPro=ADF-H/Gelsolin-like domain superfamily (IPR029006),ADF/Cofilin (IPR017904),Actin-depolymerising factor homology domain (IPR002108);NIAS_FLcDNA=J023024H08;Manual Curation=August 28%2C 2018;Literature_PMID=24279948;Oryzabase=12500;Expression=AK069605;TENOR=Os02t0663800-01;KEGG=Os02t0663800-01;Subcellular location=nucleus (GO:0005634)
Chr02	irgsp1_rep	five_prime_UTR	26921901	26922028	.	-	.	Parent=Os02t0663800-01
Chr02	irgsp1_rep	CDS	26921898	26921900	.	-	0	Parent=Os02t0663800-01
Chr02	irgsp1_rep	CDS	26921546	26921811	.	-	0	Parent=Os02t0663800-01
Chr02	irgsp1_rep	CDS	26920271	26920421	.	-	1	Parent=Os02t0663800-01
Chr02	irgsp1_rep	three_prime_UTR	26919906	26920270	.	-	.	Parent=Os02t0663800-01
Chr02	irgsp1_rep	mRNA	26924555	26927229	.	-	.	ID=Os02t0663900-01;Name=Os02t0663900-01;Locus_id=Os02g0663900;Note=Similar to Phosphoribosyltransferase (Fragment).;Transcript_evidence=AK068885 (DDBJ%2C Best hit);ORF_evidence=NP_001147315.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),Phosphoribosyltransferase C-terminal (IPR013583),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=J023002F11;Expression=AK068885;TENOR=Os02t0663900-01;KEGG=Os02t0663900-01
Chr02	irgsp1_rep	five_prime_UTR	26927174	26927229	.	-	.	Parent=Os02t0663900-01
Chr02	irgsp1_rep	CDS	26926248	26927173	.	-	0	Parent=Os02t0663900-01
Chr02	irgsp1_rep	CDS	26924717	26926130	.	-	1	Parent=Os02t0663900-01
Chr02	irgsp1_rep	three_prime_UTR	26924555	26924716	.	-	.	Parent=Os02t0663900-01
Chr02	irgsp1_rep	mRNA	26922398	26924677	.	-	.	ID=Os02t0663900-02;Name=Os02t0663900-02;Locus_id=Os02g0663900;Note=Hypothetical conserved gene.;Transcript_evidence=AK064204 (DDBJ%2C Best hit);ORF_evidence=Q6EUH6 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-104-E03;Expression=AK064204;TENOR=Os02t0663900-02;KEGG=Os02t0663900-02
Chr02	irgsp1_rep	five_prime_UTR	26924516	26924677	.	-	.	Parent=Os02t0663900-02
Chr02	irgsp1_rep	CDS	26922512	26924515	.	-	0	Parent=Os02t0663900-02
Chr02	irgsp1_rep	three_prime_UTR	26922398	26922511	.	-	.	Parent=Os02t0663900-02
Chr02	irgsp1_rep	mRNA	26929770	26932403	.	+	.	ID=Os02t0664000-01;Name=Os02t0664000-01;Locus_id=Os02g0664000;CGSNL Gene Symbol=GPX3;CGSNL Gene Name=GLUTATHIONE PEROXIDASE 3;Oryzabase Gene Symbol Synonym(s)=OsGpx3%2C GPX3%2C OsGPx03;Oryzabase Gene Name Synonym(s)=glutathione peroxidase 3;Note=Similar to Phospholipid hydroperoxide glutathione peroxidase%2C chloroplast precursor (EC 1.11.1.12) (PHGPx).;Transcript_evidence=AK058456 (DDBJ%2C Best hit),AK105165 (DDBJ%2C Best hit);ORF_evidence=A2X822 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: glutathione peroxidase activity (GO:0004602);InterPro=Glutathione peroxidase (IPR000889),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=001-015-H08,001-104-E06;Oryzabase=11398;TENOR=Os02t0664000-01
Chr02	irgsp1_rep	CDS	26929770	26930027	.	+	0	Parent=Os02t0664000-01
Chr02	irgsp1_rep	CDS	26930338	26930414	.	+	0	Parent=Os02t0664000-01
Chr02	irgsp1_rep	CDS	26931104	26931165	.	+	1	Parent=Os02t0664000-01
Chr02	irgsp1_rep	CDS	26931304	26931422	.	+	2	Parent=Os02t0664000-01
Chr02	irgsp1_rep	CDS	26931833	26932000	.	+	0	Parent=Os02t0664000-01
Chr02	irgsp1_rep	CDS	26932094	26932126	.	+	0	Parent=Os02t0664000-01
Chr02	irgsp1_rep	three_prime_UTR	26932127	26932403	.	+	.	Parent=Os02t0664000-01
Chr02	irgsp1_rep	mRNA	26930336	26932000	.	-	.	ID=Os02t0664050-00;Name=Os02t0664050-00;Locus_id=Os02g0664050;Note=Non-protein coding transcript.;Transcript_evidence=AF366451 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0664050-00
Chr02	irgsp1_rep	exon	26931861	26932000	.	-	.	Parent=Os02t0664050-00
Chr02	irgsp1_rep	exon	26931266	26931445	.	-	.	Parent=Os02t0664050-00
Chr02	irgsp1_rep	exon	26930336	26930439	.	-	.	Parent=Os02t0664050-00
Chr02	irgsp1_rep	mRNA	26933477	26941903	.	+	.	ID=Os02t0664100-00;Name=Os02t0664100-00;Locus_id=Os02g0664100;Note=Hypothetical conserved gene.;Transcript_evidence=EU943206 (DDBJ);ORF_evidence=Q6ESI8 (UniProt);GO=Biological Process: protein glycosylation (GO:0006486),Molecular Function: UDP-glucose:glycoprotein glucosyltransferase activity (GO:0003980);InterPro=UDP-glucose:Glycoprotein Glucosyltransferase (IPR009448);TENOR=Os02t0664100-00;KEGG=Os02t0664100-00 (EC:2.4.1.-)
Chr02	irgsp1_rep	five_prime_UTR	26933477	26933499	.	+	.	Parent=Os02t0664100-00
Chr02	irgsp1_rep	CDS	26933500	26933672	.	+	0	Parent=Os02t0664100-00
Chr02	irgsp1_rep	CDS	26934676	26935074	.	+	1	Parent=Os02t0664100-00
Chr02	irgsp1_rep	CDS	26935151	26935304	.	+	1	Parent=Os02t0664100-00
Chr02	irgsp1_rep	CDS	26935576	26935747	.	+	0	Parent=Os02t0664100-00
Chr02	irgsp1_rep	CDS	26936001	26936074	.	+	2	Parent=Os02t0664100-00
Chr02	irgsp1_rep	CDS	26936174	26936270	.	+	0	Parent=Os02t0664100-00
Chr02	irgsp1_rep	CDS	26936395	26936507	.	+	2	Parent=Os02t0664100-00
Chr02	irgsp1_rep	CDS	26936675	26936790	.	+	0	Parent=Os02t0664100-00
Chr02	irgsp1_rep	CDS	26937467	26937524	.	+	1	Parent=Os02t0664100-00
Chr02	irgsp1_rep	CDS	26938019	26938171	.	+	0	Parent=Os02t0664100-00
Chr02	irgsp1_rep	CDS	26938884	26938986	.	+	0	Parent=Os02t0664100-00
Chr02	irgsp1_rep	CDS	26939086	26939093	.	+	2	Parent=Os02t0664100-00
Chr02	irgsp1_rep	three_prime_UTR	26939094	26939199	.	+	.	Parent=Os02t0664100-00
Chr02	irgsp1_rep	three_prime_UTR	26939877	26939976	.	+	.	Parent=Os02t0664100-00
Chr02	irgsp1_rep	three_prime_UTR	26940719	26940807	.	+	.	Parent=Os02t0664100-00
Chr02	irgsp1_rep	three_prime_UTR	26940905	26941067	.	+	.	Parent=Os02t0664100-00
Chr02	irgsp1_rep	three_prime_UTR	26941247	26941381	.	+	.	Parent=Os02t0664100-00
Chr02	irgsp1_rep	three_prime_UTR	26941457	26941562	.	+	.	Parent=Os02t0664100-00
Chr02	irgsp1_rep	three_prime_UTR	26941650	26941744	.	+	.	Parent=Os02t0664100-00
Chr02	irgsp1_rep	three_prime_UTR	26941833	26941903	.	+	.	Parent=Os02t0664100-00
Chr02	irgsp1_rep	mRNA	26936444	26943576	.	-	.	ID=Os02t0664150-01;Name=Os02t0664150-01;Locus_id=Os02g0664150;Note=Hypothetical gene.;Transcript_evidence=AK288632 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090055E10;TENOR=Os02t0664150-01;KEGG=Os02t0664150-01
Chr02	irgsp1_rep	five_prime_UTR	26940584	26943576	.	-	.	Parent=Os02t0664150-01
Chr02	irgsp1_rep	CDS	26940302	26940583	.	-	0	Parent=Os02t0664150-01
Chr02	irgsp1_rep	three_prime_UTR	26936444	26940301	.	-	.	Parent=Os02t0664150-01
Chr02	irgsp1_rep	mRNA	26949070	26951331	.	+	.	ID=Os02t0664200-01;Name=Os02t0664200-01;Locus_id=Os02g0664200;Note=Similar to UDP-glucose:glycoprotein glucosyltransferase 1 precursor (EC 2.4.1.-) (UDP-glucose ceramide glucosyltransferase-like 1) (UDP-- Glc:glycoprotein glucosyltransferase) (HUGT1).;Transcript_evidence=AK059298 (DDBJ%2C Best hit);ORF_evidence=NP_177278.3 (RefSeq);GO=Biological Process: protein glycosylation (GO:0006486),Molecular Function: UDP-glucose:glycoprotein glucosyltransferase activity (GO:0003980),Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 8 (IPR002495),UDP-glucose:Glycoprotein Glucosyltransferase (IPR009448);NIAS_FLcDNA=001-025-E12;Expression=AK059298;TENOR=Os02t0664200-01;KEGG=Os02t0664200-01 (EC:2.4.1.-)
Chr02	irgsp1_rep	CDS	26949070	26949183	.	+	0	Parent=Os02t0664200-01
Chr02	irgsp1_rep	CDS	26949297	26949437	.	+	0	Parent=Os02t0664200-01
Chr02	irgsp1_rep	CDS	26949526	26949569	.	+	0	Parent=Os02t0664200-01
Chr02	irgsp1_rep	CDS	26949653	26949767	.	+	1	Parent=Os02t0664200-01
Chr02	irgsp1_rep	CDS	26950524	26950676	.	+	0	Parent=Os02t0664200-01
Chr02	irgsp1_rep	CDS	26950763	26950924	.	+	0	Parent=Os02t0664200-01
Chr02	irgsp1_rep	three_prime_UTR	26950925	26951331	.	+	.	Parent=Os02t0664200-01
Chr02	irgsp1_rep	mRNA	26952898	26970222	.	+	.	ID=Os02t0664300-01;Name=Os02t0664300-01;Locus_id=Os02g0664300;Oryzabase Gene Symbol Synonym(s)=OsSub19%2C SUB19;Oryzabase Gene Name Synonym(s)=Subtilisin 19%2C SUBTILISIN 19;Note=Peptidase S8 and S53%2C subtilisin%2C kexin%2C sedolisin domain containing protein.;Transcript_evidence=AK067099 (DDBJ%2C Best hit);ORF_evidence=NP_193817.2 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8A%2C tripeptidyl peptidase II (IPR022229),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);NIAS_FLcDNA=J013096M07;Oryzabase=20108;Expression=AK067099;TENOR=Os02t0664300-01;KEGG=Os02t0664300-01 (EC:3.4.14.10)
Chr02	irgsp1_rep	five_prime_UTR	26952898	26953165	.	+	.	Parent=Os02t0664300-01
Chr02	irgsp1_rep	CDS	26953166	26953541	.	+	0	Parent=Os02t0664300-01
Chr02	irgsp1_rep	CDS	26954241	26954319	.	+	2	Parent=Os02t0664300-01
Chr02	irgsp1_rep	CDS	26954412	26954485	.	+	1	Parent=Os02t0664300-01
Chr02	irgsp1_rep	CDS	26954842	26954951	.	+	2	Parent=Os02t0664300-01
Chr02	irgsp1_rep	CDS	26955032	26955112	.	+	0	Parent=Os02t0664300-01
Chr02	irgsp1_rep	CDS	26955436	26955522	.	+	0	Parent=Os02t0664300-01
Chr02	irgsp1_rep	CDS	26955604	26955746	.	+	0	Parent=Os02t0664300-01
Chr02	irgsp1_rep	CDS	26956253	26956403	.	+	1	Parent=Os02t0664300-01
Chr02	irgsp1_rep	CDS	26956480	26956602	.	+	0	Parent=Os02t0664300-01
Chr02	irgsp1_rep	CDS	26956869	26956952	.	+	0	Parent=Os02t0664300-01
Chr02	irgsp1_rep	CDS	26957038	26957225	.	+	0	Parent=Os02t0664300-01
Chr02	irgsp1_rep	CDS	26958233	26958407	.	+	1	Parent=Os02t0664300-01
Chr02	irgsp1_rep	CDS	26958515	26958636	.	+	0	Parent=Os02t0664300-01
Chr02	irgsp1_rep	CDS	26958738	26958817	.	+	1	Parent=Os02t0664300-01
Chr02	irgsp1_rep	CDS	26959039	26959097	.	+	2	Parent=Os02t0664300-01
Chr02	irgsp1_rep	CDS	26959428	26959582	.	+	0	Parent=Os02t0664300-01
Chr02	irgsp1_rep	CDS	26960187	26960365	.	+	1	Parent=Os02t0664300-01
Chr02	irgsp1_rep	CDS	26961557	26961669	.	+	2	Parent=Os02t0664300-01
Chr02	irgsp1_rep	CDS	26961750	26961920	.	+	0	Parent=Os02t0664300-01
Chr02	irgsp1_rep	CDS	26962059	26962187	.	+	0	Parent=Os02t0664300-01
Chr02	irgsp1_rep	CDS	26962263	26962363	.	+	0	Parent=Os02t0664300-01
Chr02	irgsp1_rep	CDS	26962449	26962566	.	+	1	Parent=Os02t0664300-01
Chr02	irgsp1_rep	CDS	26963246	26963325	.	+	0	Parent=Os02t0664300-01
Chr02	irgsp1_rep	CDS	26964737	26964809	.	+	1	Parent=Os02t0664300-01
Chr02	irgsp1_rep	CDS	26965372	26965457	.	+	0	Parent=Os02t0664300-01
Chr02	irgsp1_rep	CDS	26965532	26965583	.	+	1	Parent=Os02t0664300-01
Chr02	irgsp1_rep	CDS	26965728	26965859	.	+	0	Parent=Os02t0664300-01
Chr02	irgsp1_rep	CDS	26966067	26966135	.	+	0	Parent=Os02t0664300-01
Chr02	irgsp1_rep	CDS	26966419	26966511	.	+	0	Parent=Os02t0664300-01
Chr02	irgsp1_rep	CDS	26967313	26967408	.	+	0	Parent=Os02t0664300-01
Chr02	irgsp1_rep	CDS	26968217	26968315	.	+	0	Parent=Os02t0664300-01
Chr02	irgsp1_rep	CDS	26968401	26968493	.	+	0	Parent=Os02t0664300-01
Chr02	irgsp1_rep	CDS	26968966	26969115	.	+	0	Parent=Os02t0664300-01
Chr02	irgsp1_rep	CDS	26969898	26970056	.	+	0	Parent=Os02t0664300-01
Chr02	irgsp1_rep	three_prime_UTR	26970057	26970222	.	+	.	Parent=Os02t0664300-01
Chr02	irgsp1_rep	mRNA	26953166	26965800	.	+	.	ID=Os02t0664300-02;Name=Os02t0664300-02;Locus_id=Os02g0664300;Oryzabase Gene Symbol Synonym(s)=OsSub19%2C SUB19;Oryzabase Gene Name Synonym(s)=Subtilisin 19%2C SUBTILISIN 19;Note=Similar to predicted protein.;Transcript_evidence=AK103515 (DDBJ%2C Best hit);ORF_evidence=NP_193817.2 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8A%2C tripeptidyl peptidase II (IPR022229),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);NIAS_FLcDNA=J033131G16;Oryzabase=20108;TENOR=Os02t0664300-02
Chr02	irgsp1_rep	CDS	26953166	26953541	.	+	0	Parent=Os02t0664300-02
Chr02	irgsp1_rep	CDS	26954241	26954319	.	+	2	Parent=Os02t0664300-02
Chr02	irgsp1_rep	CDS	26954412	26954485	.	+	1	Parent=Os02t0664300-02
Chr02	irgsp1_rep	CDS	26954842	26954951	.	+	2	Parent=Os02t0664300-02
Chr02	irgsp1_rep	CDS	26955032	26955112	.	+	0	Parent=Os02t0664300-02
Chr02	irgsp1_rep	CDS	26955436	26955522	.	+	0	Parent=Os02t0664300-02
Chr02	irgsp1_rep	CDS	26955604	26955746	.	+	0	Parent=Os02t0664300-02
Chr02	irgsp1_rep	CDS	26956253	26956403	.	+	1	Parent=Os02t0664300-02
Chr02	irgsp1_rep	CDS	26956480	26956602	.	+	0	Parent=Os02t0664300-02
Chr02	irgsp1_rep	CDS	26956869	26956952	.	+	0	Parent=Os02t0664300-02
Chr02	irgsp1_rep	CDS	26957038	26957225	.	+	0	Parent=Os02t0664300-02
Chr02	irgsp1_rep	CDS	26958233	26958407	.	+	1	Parent=Os02t0664300-02
Chr02	irgsp1_rep	CDS	26958515	26958636	.	+	0	Parent=Os02t0664300-02
Chr02	irgsp1_rep	CDS	26958738	26958817	.	+	1	Parent=Os02t0664300-02
Chr02	irgsp1_rep	CDS	26959039	26959097	.	+	2	Parent=Os02t0664300-02
Chr02	irgsp1_rep	CDS	26959428	26959582	.	+	0	Parent=Os02t0664300-02
Chr02	irgsp1_rep	CDS	26960187	26960365	.	+	1	Parent=Os02t0664300-02
Chr02	irgsp1_rep	CDS	26961557	26961669	.	+	2	Parent=Os02t0664300-02
Chr02	irgsp1_rep	CDS	26961750	26961920	.	+	0	Parent=Os02t0664300-02
Chr02	irgsp1_rep	CDS	26962059	26962187	.	+	0	Parent=Os02t0664300-02
Chr02	irgsp1_rep	CDS	26962263	26962363	.	+	0	Parent=Os02t0664300-02
Chr02	irgsp1_rep	CDS	26962449	26962566	.	+	1	Parent=Os02t0664300-02
Chr02	irgsp1_rep	CDS	26963246	26963325	.	+	0	Parent=Os02t0664300-02
Chr02	irgsp1_rep	CDS	26964737	26964809	.	+	1	Parent=Os02t0664300-02
Chr02	irgsp1_rep	CDS	26965372	26965457	.	+	0	Parent=Os02t0664300-02
Chr02	irgsp1_rep	CDS	26965532	26965583	.	+	1	Parent=Os02t0664300-02
Chr02	irgsp1_rep	CDS	26965728	26965800	.	+	0	Parent=Os02t0664300-02
Chr02	irgsp1_rep	mRNA	26956921	26970251	.	+	.	ID=Os02t0664300-03;Name=Os02t0664300-03;Locus_id=Os02g0664300;Oryzabase Gene Symbol Synonym(s)=OsSub19%2C SUB19;Oryzabase Gene Name Synonym(s)=Subtilisin 19%2C SUBTILISIN 19;Note=Similar to predicted protein.;Transcript_evidence=AK066478 (DDBJ%2C Best hit);ORF_evidence=NP_193817.2 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8A%2C tripeptidyl peptidase II (IPR022229),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);NIAS_FLcDNA=J013069C16;Oryzabase=20108;Expression=AK066478;TENOR=Os02t0664300-03;KEGG=Os02t0664300-03 (EC:3.4.14.10)
Chr02	irgsp1_rep	five_prime_UTR	26956921	26956922	.	+	.	Parent=Os02t0664300-03
Chr02	irgsp1_rep	CDS	26956923	26956952	.	+	0	Parent=Os02t0664300-03
Chr02	irgsp1_rep	CDS	26957038	26957225	.	+	0	Parent=Os02t0664300-03
Chr02	irgsp1_rep	CDS	26958233	26958407	.	+	1	Parent=Os02t0664300-03
Chr02	irgsp1_rep	CDS	26958515	26958636	.	+	0	Parent=Os02t0664300-03
Chr02	irgsp1_rep	CDS	26958738	26958817	.	+	1	Parent=Os02t0664300-03
Chr02	irgsp1_rep	CDS	26959039	26959097	.	+	2	Parent=Os02t0664300-03
Chr02	irgsp1_rep	CDS	26959428	26959582	.	+	0	Parent=Os02t0664300-03
Chr02	irgsp1_rep	CDS	26960187	26960365	.	+	1	Parent=Os02t0664300-03
Chr02	irgsp1_rep	CDS	26961557	26961669	.	+	2	Parent=Os02t0664300-03
Chr02	irgsp1_rep	CDS	26961750	26961920	.	+	0	Parent=Os02t0664300-03
Chr02	irgsp1_rep	CDS	26962059	26962187	.	+	0	Parent=Os02t0664300-03
Chr02	irgsp1_rep	CDS	26962263	26962363	.	+	0	Parent=Os02t0664300-03
Chr02	irgsp1_rep	CDS	26962449	26962566	.	+	1	Parent=Os02t0664300-03
Chr02	irgsp1_rep	CDS	26963246	26963325	.	+	0	Parent=Os02t0664300-03
Chr02	irgsp1_rep	CDS	26964737	26964809	.	+	1	Parent=Os02t0664300-03
Chr02	irgsp1_rep	CDS	26965372	26965457	.	+	0	Parent=Os02t0664300-03
Chr02	irgsp1_rep	CDS	26965532	26965583	.	+	1	Parent=Os02t0664300-03
Chr02	irgsp1_rep	CDS	26965728	26965979	.	+	0	Parent=Os02t0664300-03
Chr02	irgsp1_rep	three_prime_UTR	26965980	26966135	.	+	.	Parent=Os02t0664300-03
Chr02	irgsp1_rep	three_prime_UTR	26966419	26966511	.	+	.	Parent=Os02t0664300-03
Chr02	irgsp1_rep	three_prime_UTR	26967313	26967408	.	+	.	Parent=Os02t0664300-03
Chr02	irgsp1_rep	three_prime_UTR	26968217	26968315	.	+	.	Parent=Os02t0664300-03
Chr02	irgsp1_rep	three_prime_UTR	26968401	26968493	.	+	.	Parent=Os02t0664300-03
Chr02	irgsp1_rep	three_prime_UTR	26968966	26969115	.	+	.	Parent=Os02t0664300-03
Chr02	irgsp1_rep	three_prime_UTR	26969898	26970251	.	+	.	Parent=Os02t0664300-03
Chr02	irgsp1_rep	mRNA	26975710	26976170	.	+	.	ID=Os02t0664350-00;Name=Os02t0664350-00;Locus_id=Os02g0664350;Note=Non-protein coding transcript.;Transcript_evidence=CT835359 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os02t0664350-00
Chr02	irgsp1_rep	exon	26975710	26976170	.	+	.	Parent=Os02t0664350-00
Chr02	irgsp1_rep	mRNA	26975763	26978624	.	-	.	ID=Os02t0664400-01;Name=Os02t0664400-01;Locus_id=Os02g0664400;Oryzabase Gene Name Synonym(s)=Hypothetical conserved gene;Note=Hypothetical conserved gene.;Transcript_evidence=AK241837 (DDBJ%2C Best hit);ORF_evidence=Q6ESI3 (UniProt);InterPro=Chromatin SPT2 (IPR013256);NIAS_FLcDNA=J065213I19;Oryzabase=22015;TENOR=Os02t0664400-01;KEGG=Os02t0664400-01
Chr02	irgsp1_rep	five_prime_UTR	26978509	26978624	.	-	.	Parent=Os02t0664400-01
Chr02	irgsp1_rep	five_prime_UTR	26978249	26978314	.	-	.	Parent=Os02t0664400-01
Chr02	irgsp1_rep	CDS	26978207	26978248	.	-	0	Parent=Os02t0664400-01
Chr02	irgsp1_rep	CDS	26977822	26978096	.	-	0	Parent=Os02t0664400-01
Chr02	irgsp1_rep	CDS	26977603	26977705	.	-	1	Parent=Os02t0664400-01
Chr02	irgsp1_rep	CDS	26977416	26977493	.	-	0	Parent=Os02t0664400-01
Chr02	irgsp1_rep	CDS	26977173	26977299	.	-	0	Parent=Os02t0664400-01
Chr02	irgsp1_rep	CDS	26976686	26977080	.	-	2	Parent=Os02t0664400-01
Chr02	irgsp1_rep	CDS	26976402	26976529	.	-	0	Parent=Os02t0664400-01
Chr02	irgsp1_rep	CDS	26976221	26976310	.	-	1	Parent=Os02t0664400-01
Chr02	irgsp1_rep	CDS	26975969	26976098	.	-	1	Parent=Os02t0664400-01
Chr02	irgsp1_rep	three_prime_UTR	26975763	26975968	.	-	.	Parent=Os02t0664400-01
Chr02	irgsp1_rep	mRNA	26982207	26986884	.	-	.	ID=Os02t0664700-01;Name=Os02t0664700-01;Locus_id=Os02g0664700;Note=Conserved hypothetical protein.;Transcript_evidence=AK065482 (DDBJ%2C Best hit);ORF_evidence=Q6ESI2 (UniProt);NIAS_FLcDNA=J013020D20;Expression=AK065482;TENOR=Os02t0664700-01;KEGG=Os02t0664700-01
Chr02	irgsp1_rep	five_prime_UTR	26986581	26986884	.	-	.	Parent=Os02t0664700-01
Chr02	irgsp1_rep	CDS	26985382	26985639	.	-	0	Parent=Os02t0664700-01
Chr02	irgsp1_rep	CDS	26985241	26985306	.	-	0	Parent=Os02t0664700-01
Chr02	irgsp1_rep	three_prime_UTR	26985061	26985240	.	-	.	Parent=Os02t0664700-01
Chr02	irgsp1_rep	three_prime_UTR	26982709	26982867	.	-	.	Parent=Os02t0664700-01
Chr02	irgsp1_rep	three_prime_UTR	26982207	26982636	.	-	.	Parent=Os02t0664700-01
Chr02	irgsp1_rep	mRNA	26982288	26986839	.	-	.	ID=Os02t0664700-02;Name=Os02t0664700-02;Locus_id=Os02g0664700;Note=Similar to cDNA clone:J013020D20%2C full insert sequence.;Transcript_evidence=AK060868 (DDBJ%2C Best hit);ORF_evidence=B8AGD1 (UniProt);NIAS_FLcDNA=001-034-H05;Expression=AK060868;TENOR=Os02t0664700-02;KEGG=Os02t0664700-02
Chr02	irgsp1_rep	five_prime_UTR	26986617	26986839	.	-	.	Parent=Os02t0664700-02
Chr02	irgsp1_rep	CDS	26985382	26985639	.	-	0	Parent=Os02t0664700-02
Chr02	irgsp1_rep	CDS	26985061	26985115	.	-	0	Parent=Os02t0664700-02
Chr02	irgsp1_rep	CDS	26982709	26982867	.	-	2	Parent=Os02t0664700-02
Chr02	irgsp1_rep	CDS	26982479	26982636	.	-	2	Parent=Os02t0664700-02
Chr02	irgsp1_rep	three_prime_UTR	26982288	26982478	.	-	.	Parent=Os02t0664700-02
Chr02	irgsp1_rep	mRNA	26988679	26993982	.	-	.	ID=Os02t0665000-01;Name=Os02t0665000-01;Locus_id=Os02g0665000;Note=Similar to Malic enzyme.;Transcript_evidence=AK068078 (DDBJ%2C Best hit);ORF_evidence=A2X827 (UniProt);GO=Biological Process: malate metabolic process (GO:0006108),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: malic enzyme activity (GO:0004470),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: malate dehydrogenase (oxaloacetate-decarboxylating) activity (GO:0016619);InterPro=Malic oxidoreductase (IPR001891),Malic enzyme%2C N-terminal (IPR012301);NIAS_FLcDNA=J013135D10;Expression=AK068078;TENOR=Os02t0665000-01;KEGG=Os02t0665000-01 (EC:1.1.1.40)
Chr02	irgsp1_rep	five_prime_UTR	26993438	26993982	.	-	.	Parent=Os02t0665000-01
Chr02	irgsp1_rep	CDS	26993426	26993437	.	-	0	Parent=Os02t0665000-01
Chr02	irgsp1_rep	CDS	26993123	26993274	.	-	0	Parent=Os02t0665000-01
Chr02	irgsp1_rep	CDS	26992908	26993013	.	-	1	Parent=Os02t0665000-01
Chr02	irgsp1_rep	CDS	26992489	26992779	.	-	0	Parent=Os02t0665000-01
Chr02	irgsp1_rep	three_prime_UTR	26992312	26992488	.	-	.	Parent=Os02t0665000-01
Chr02	irgsp1_rep	three_prime_UTR	26992115	26992182	.	-	.	Parent=Os02t0665000-01
Chr02	irgsp1_rep	three_prime_UTR	26991846	26991997	.	-	.	Parent=Os02t0665000-01
Chr02	irgsp1_rep	three_prime_UTR	26988679	26991048	.	-	.	Parent=Os02t0665000-01
Chr02	irgsp1_rep	mRNA	26989377	26993946	.	-	.	ID=Os02t0665000-02;Name=Os02t0665000-02;Locus_id=Os02g0665000;Note=Similar to NADP-malic enzyme.;Transcript_evidence=AK073120 (DDBJ%2C Best hit);ORF_evidence=A3A9W6 (UniProt);GO=Biological Process: malate metabolic process (GO:0006108),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: malic enzyme activity (GO:0004470),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: malate dehydrogenase (oxaloacetate-decarboxylating) activity (GO:0016619);InterPro=Malic oxidoreductase (IPR001891),Malic enzyme%2C N-terminal (IPR012301);NIAS_FLcDNA=J033003N08;Expression=AK073120;TENOR=Os02t0665000-02;KEGG=Os02t0665000-02 (EC:1.1.1.40)
Chr02	irgsp1_rep	five_prime_UTR	26993438	26993946	.	-	.	Parent=Os02t0665000-02
Chr02	irgsp1_rep	CDS	26993421	26993437	.	-	0	Parent=Os02t0665000-02
Chr02	irgsp1_rep	CDS	26993123	26993269	.	-	1	Parent=Os02t0665000-02
Chr02	irgsp1_rep	CDS	26992908	26993013	.	-	1	Parent=Os02t0665000-02
Chr02	irgsp1_rep	CDS	26992489	26992779	.	-	0	Parent=Os02t0665000-02
Chr02	irgsp1_rep	three_prime_UTR	26992312	26992488	.	-	.	Parent=Os02t0665000-02
Chr02	irgsp1_rep	three_prime_UTR	26992115	26992182	.	-	.	Parent=Os02t0665000-02
Chr02	irgsp1_rep	three_prime_UTR	26991846	26991997	.	-	.	Parent=Os02t0665000-02
Chr02	irgsp1_rep	three_prime_UTR	26990029	26991048	.	-	.	Parent=Os02t0665000-02
Chr02	irgsp1_rep	three_prime_UTR	26989377	26989534	.	-	.	Parent=Os02t0665000-02
Chr02	irgsp1_rep	mRNA	27010437	27015186	.	+	.	ID=Os02t0665200-01;Name=Os02t0665200-01;Locus_id=Os02g0665200;Note=Mitochondrial substrate carrier family protein.;Transcript_evidence=AK068162 (DDBJ%2C Best hit);ORF_evidence=B9F1I8 (UniProt);InterPro=Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J013135N06;Expression=AK068162;TENOR=Os02t0665200-01;KEGG=Os02t0665200-01
Chr02	irgsp1_rep	five_prime_UTR	27010437	27010687	.	+	.	Parent=Os02t0665200-01
Chr02	irgsp1_rep	five_prime_UTR	27011175	27011231	.	+	.	Parent=Os02t0665200-01
Chr02	irgsp1_rep	CDS	27011232	27012378	.	+	0	Parent=Os02t0665200-01
Chr02	irgsp1_rep	CDS	27012502	27012620	.	+	2	Parent=Os02t0665200-01
Chr02	irgsp1_rep	CDS	27012732	27012856	.	+	0	Parent=Os02t0665200-01
Chr02	irgsp1_rep	CDS	27012998	27013097	.	+	1	Parent=Os02t0665200-01
Chr02	irgsp1_rep	CDS	27013187	27013264	.	+	0	Parent=Os02t0665200-01
Chr02	irgsp1_rep	CDS	27014325	27014408	.	+	0	Parent=Os02t0665200-01
Chr02	irgsp1_rep	CDS	27014584	27014669	.	+	0	Parent=Os02t0665200-01
Chr02	irgsp1_rep	CDS	27014761	27014878	.	+	1	Parent=Os02t0665200-01
Chr02	irgsp1_rep	three_prime_UTR	27014879	27015186	.	+	.	Parent=Os02t0665200-01
Chr02	irgsp1_rep	mRNA	27015219	27015749	.	-	.	ID=Os02t0665250-01;Name=Os02t0665250-01;Locus_id=Os02g0665250;Note=Conserved hypothetical protein.;Transcript_evidence=AK242407 (DDBJ%2C Best hit);ORF_evidence=NP_001173107.1 (RefSeq);NIAS_FLcDNA=J080071F19;TENOR=Os02t0665250-01;KEGG=Os02t0665250-01
Chr02	irgsp1_rep	five_prime_UTR	27015707	27015749	.	-	.	Parent=Os02t0665250-01
Chr02	irgsp1_rep	CDS	27015398	27015706	.	-	0	Parent=Os02t0665250-01
Chr02	irgsp1_rep	three_prime_UTR	27015219	27015397	.	-	.	Parent=Os02t0665250-01
Chr02	irgsp1_rep	mRNA	27018440	27021331	.	+	.	ID=Os02t0665300-01;Name=Os02t0665300-01;Locus_id=Os02g0665300;Oryzabase Gene Symbol Synonym(s)=OsSP1%2C OsSub20%2C SUB20;Oryzabase Gene Name Synonym(s)=Serine protease 1%2C Subtilisin 20%2C SUBTILISIN 20;Note=Peptidase S8%2C subtilisin-related domain containing protein.;Transcript_evidence=AK100551 (DDBJ%2C Best hit);ORF_evidence=Q9LRF2 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C  Asp-active site (IPR023827);NIAS_FLcDNA=J023103I17;Oryzabase=11562;Expression=AK100551;TENOR=Os02t0665300-01;KEGG=Os02t0665300-01
Chr02	irgsp1_rep	five_prime_UTR	27018440	27018597	.	+	.	Parent=Os02t0665300-01
Chr02	irgsp1_rep	CDS	27018598	27020973	.	+	0	Parent=Os02t0665300-01
Chr02	irgsp1_rep	three_prime_UTR	27020974	27021331	.	+	.	Parent=Os02t0665300-01
Chr02	irgsp1_rep	mRNA	27018527	27021717	.	+	.	ID=Os02t0665300-02;Name=Os02t0665300-02;Locus_id=Os02g0665300;Oryzabase Gene Symbol Synonym(s)=OsSP1%2C OsSub20%2C SUB20;Oryzabase Gene Name Synonym(s)=Serine protease 1%2C Subtilisin 20%2C SUBTILISIN 20;Note=Peptidase S8%2C subtilisin-related domain containing protein.;Transcript_evidence=AK072929 (DDBJ%2C Best hit);ORF_evidence=Q9LRF2 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C  Asp-active site (IPR023827);NIAS_FLcDNA=J023148I21;Oryzabase=11562;Expression=AK072929;TENOR=Os02t0665300-02;KEGG=Os02t0665300-02
Chr02	irgsp1_rep	five_prime_UTR	27018527	27018597	.	+	.	Parent=Os02t0665300-02
Chr02	irgsp1_rep	CDS	27018598	27020973	.	+	0	Parent=Os02t0665300-02
Chr02	irgsp1_rep	three_prime_UTR	27020974	27021717	.	+	.	Parent=Os02t0665300-02
Chr02	irgsp1_rep	mRNA	27019536	27021968	.	-	.	ID=Os02t0665350-01;Name=Os02t0665350-01;Locus_id=Os02g0665350;Note=Hypothetical gene.;Transcript_evidence=AK289119 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090097I11;TENOR=Os02t0665350-01;KEGG=Os02t0665350-01
Chr02	irgsp1_rep	five_prime_UTR	27021151	27021968	.	-	.	Parent=Os02t0665350-01
Chr02	irgsp1_rep	CDS	27020329	27021150	.	-	0	Parent=Os02t0665350-01
Chr02	irgsp1_rep	three_prime_UTR	27019536	27020328	.	-	.	Parent=Os02t0665350-01
Chr02	irgsp1_rep	mRNA	27026410	27028418	.	-	.	ID=Os02t0665400-01;Name=Os02t0665400-01;Locus_id=Os02g0665400;Oryzabase Gene Symbol Synonym(s)=OsPUB60;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 60%2C U-box protein 60;Note=Similar to Interleukin-1 receptor-associated kinase 1 (EC 2.7.1.37) (IRAK-1). Splice isoform 2.;Transcript_evidence=AK109787 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-147-D02;Oryzabase=17851;Expression=AK109787;TENOR=Os02t0665400-01;KEGG=Os02t0665400-01 (EC:2.7.1.37)
Chr02	irgsp1_rep	five_prime_UTR	27028326	27028418	.	-	.	Parent=Os02t0665400-01
Chr02	irgsp1_rep	five_prime_UTR	27027969	27028247	.	-	.	Parent=Os02t0665400-01
Chr02	irgsp1_rep	five_prime_UTR	27027542	27027664	.	-	.	Parent=Os02t0665400-01
Chr02	irgsp1_rep	CDS	27027026	27027541	.	-	0	Parent=Os02t0665400-01
Chr02	irgsp1_rep	three_prime_UTR	27026410	27027025	.	-	.	Parent=Os02t0665400-01
Chr02	irgsp1_rep	mRNA	27023008	27027640	.	-	.	ID=Os02t0665400-02;Name=Os02t0665400-02;Locus_id=Os02g0665400;Oryzabase Gene Symbol Synonym(s)=OsPUB60;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 60%2C U-box protein 60;Note=Similar to Interleukin-1 receptor-associated kinase 1 (EC 2.7.1.37) (IRAK-1). Splice isoform 2.;Transcript_evidence=AK120141 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013028D07;Oryzabase=17851;Expression=AK120141;TENOR=Os02t0665400-02;KEGG=Os02t0665400-02 (EC:2.7.1.37)
Chr02	irgsp1_rep	five_prime_UTR	27027542	27027640	.	-	.	Parent=Os02t0665400-02
Chr02	irgsp1_rep	CDS	27027026	27027541	.	-	0	Parent=Os02t0665400-02
Chr02	irgsp1_rep	three_prime_UTR	27026070	27027025	.	-	.	Parent=Os02t0665400-02
Chr02	irgsp1_rep	three_prime_UTR	27025320	27025928	.	-	.	Parent=Os02t0665400-02
Chr02	irgsp1_rep	three_prime_UTR	27025085	27025185	.	-	.	Parent=Os02t0665400-02
Chr02	irgsp1_rep	three_prime_UTR	27023008	27023629	.	-	.	Parent=Os02t0665400-02
Chr02	irgsp1_rep	mRNA	27023005	27027617	.	-	.	ID=Os02t0665400-03;Name=Os02t0665400-03;Locus_id=Os02g0665400;Oryzabase Gene Symbol Synonym(s)=OsPUB60;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 60%2C U-box protein 60;Note=Similar to Interleukin-1 receptor-associated kinase 1 (EC 2.7.1.37) (IRAK-1). Splice isoform 2.;Transcript_evidence=AK073914 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033076N24;Oryzabase=17851;Expression=AK073914;TENOR=Os02t0665400-03;KEGG=Os02t0665400-03 (EC:2.7.1.37)
Chr02	irgsp1_rep	five_prime_UTR	27027542	27027617	.	-	.	Parent=Os02t0665400-03
Chr02	irgsp1_rep	CDS	27027026	27027541	.	-	0	Parent=Os02t0665400-03
Chr02	irgsp1_rep	three_prime_UTR	27025320	27027025	.	-	.	Parent=Os02t0665400-03
Chr02	irgsp1_rep	three_prime_UTR	27025085	27025198	.	-	.	Parent=Os02t0665400-03
Chr02	irgsp1_rep	three_prime_UTR	27023005	27023629	.	-	.	Parent=Os02t0665400-03
Chr02	irgsp1_rep	mRNA	27026502	27028416	.	+	.	ID=Os02t0665500-01;Name=Os02t0665500-01;Locus_id=Os02g0665500;Note=Similar to U-box domain containing protein%2C expressed.;Transcript_evidence=AK109040 (DDBJ%2C Best hit);ORF_evidence=Q336U6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),U box domain (IPR003613),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=002-154-D01;TENOR=Os02t0665500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	27026502	27026503	.	+	.	Parent=Os02t0665500-01
Chr02	irgsp1_rep	CDS	27026504	27026767	.	+	0	Parent=Os02t0665500-01
Chr02	irgsp1_rep	CDS	27026856	27027635	.	+	0	Parent=Os02t0665500-01
Chr02	irgsp1_rep	CDS	27027948	27028169	.	+	0	Parent=Os02t0665500-01
Chr02	irgsp1_rep	three_prime_UTR	27028170	27028416	.	+	.	Parent=Os02t0665500-01
Chr02	irgsp1_rep	mRNA	27028662	27034653	.	-	.	ID=Os02t0665600-01;Name=Os02t0665600-01;Locus_id=Os02g0665600;Note=Hypothetical protein.;Transcript_evidence=AK066338 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013067J15;TENOR=Os02t0665600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	27034631	27034653	.	-	.	Parent=Os02t0665600-01
Chr02	irgsp1_rep	CDS	27034411	27034630	.	-	0	Parent=Os02t0665600-01
Chr02	irgsp1_rep	CDS	27030625	27030664	.	-	2	Parent=Os02t0665600-01
Chr02	irgsp1_rep	CDS	27030270	27030381	.	-	1	Parent=Os02t0665600-01
Chr02	irgsp1_rep	three_prime_UTR	27030269	27030269	.	-	.	Parent=Os02t0665600-01
Chr02	irgsp1_rep	three_prime_UTR	27029848	27029938	.	-	.	Parent=Os02t0665600-01
Chr02	irgsp1_rep	three_prime_UTR	27029536	27029614	.	-	.	Parent=Os02t0665600-01
Chr02	irgsp1_rep	three_prime_UTR	27029068	27029424	.	-	.	Parent=Os02t0665600-01
Chr02	irgsp1_rep	three_prime_UTR	27028662	27028990	.	-	.	Parent=Os02t0665600-01
Chr02	irgsp1_rep	mRNA	27029085	27034764	.	+	.	ID=Os02t0665800-01;Name=Os02t0665800-01;Locus_id=Os02g0665800;CGSNL Gene Symbol=RLCK81;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 81;Oryzabase Gene Symbol Synonym(s)=OsPUB55%2C OsRLCK81;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 55%2C U-box protein 55%2C Receptor-like Cytoplasmic Kinase 81;Note=UspA domain containing protein.;Transcript_evidence=AK243162 (DDBJ%2C Best hit);ORF_evidence=A2X833 (UniProt);GO=Biological Process: response to stress (GO:0006950);InterPro=UspA (IPR006016),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J100034K17;Oryzabase=17846;TENOR=Os02t0665800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	27029085	27029183	.	+	.	Parent=Os02t0665800-01
Chr02	irgsp1_rep	CDS	27029184	27029445	.	+	0	Parent=Os02t0665800-01
Chr02	irgsp1_rep	CDS	27029526	27029647	.	+	2	Parent=Os02t0665800-01
Chr02	irgsp1_rep	CDS	27029783	27029904	.	+	0	Parent=Os02t0665800-01
Chr02	irgsp1_rep	CDS	27030291	27030395	.	+	1	Parent=Os02t0665800-01
Chr02	irgsp1_rep	CDS	27030627	27030817	.	+	1	Parent=Os02t0665800-01
Chr02	irgsp1_rep	CDS	27031596	27031762	.	+	2	Parent=Os02t0665800-01
Chr02	irgsp1_rep	CDS	27031845	27031997	.	+	0	Parent=Os02t0665800-01
Chr02	irgsp1_rep	CDS	27032161	27032457	.	+	0	Parent=Os02t0665800-01
Chr02	irgsp1_rep	CDS	27032560	27032727	.	+	0	Parent=Os02t0665800-01
Chr02	irgsp1_rep	CDS	27032805	27032882	.	+	0	Parent=Os02t0665800-01
Chr02	irgsp1_rep	three_prime_UTR	27032883	27033434	.	+	.	Parent=Os02t0665800-01
Chr02	irgsp1_rep	three_prime_UTR	27033538	27034275	.	+	.	Parent=Os02t0665800-01
Chr02	irgsp1_rep	three_prime_UTR	27034442	27034764	.	+	.	Parent=Os02t0665800-01
Chr02	irgsp1_rep	mRNA	27035398	27036001	.	-	.	ID=Os02t0666000-01;Name=Os02t0666000-01;Locus_id=Os02g0666000;Note=Conserved hypothetical protein.;Transcript_evidence=AK107884 (DDBJ%2C Best hit);ORF_evidence=Q5VQU8 (UniProt);NIAS_FLcDNA=002-134-D10;Expression=AK107884;TENOR=Os02t0666000-01;KEGG=Os02t0666000-01
Chr02	irgsp1_rep	five_prime_UTR	27035723	27036001	.	-	.	Parent=Os02t0666000-01
Chr02	irgsp1_rep	CDS	27035429	27035722	.	-	0	Parent=Os02t0666000-01
Chr02	irgsp1_rep	three_prime_UTR	27035398	27035428	.	-	.	Parent=Os02t0666000-01
Chr02	irgsp1_rep	mRNA	27044341	27047381	.	+	.	ID=Os02t0666200-01;Name=Os02t0666200-01;Locus_id=Os02g0666200;CGSNL Gene Symbol=PIP1A;CGSNL Gene Name=PLASMA MEMBRANE INTRINSIC PROTEIN 1A;Oryzabase Gene Symbol Synonym(s)=OsPIP1a%2C OsPIP1%3B1%2C PIP1a%2C RWC-1%2C PIP1-1%2C RWC1%2C OsPIP1-1%2C PIP1%3B1%2C PIP1-5;Oryzabase Gene Name Synonym(s)=Aquaporin PIP1-1%2C Plasma membrane intrinsic protein 1-1%2C Plasma membrane intrinsic protein 1a%2C Water channel protein RWC1%2C plasma membrane intrinsic protein 1-5;Note=Aquaporin.;Transcript_evidence=AK103807 (DDBJ%2C Best hit);ORF_evidence=B7SDI4 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: water transport (GO:0006833),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Aquaporin (IPR012269),Major intrinsic protein%2C conserved site (IPR022357),Aquaporin-like (IPR023271);NIAS_FLcDNA=J033147A07;Oryzabase=6255;Expression=AK103807;TENOR=Os02t0666200-01;KEGG=Os02t0666200-01
Chr02	irgsp1_rep	five_prime_UTR	27044341	27044451	.	+	.	Parent=Os02t0666200-01
Chr02	irgsp1_rep	CDS	27044452	27044788	.	+	0	Parent=Os02t0666200-01
Chr02	irgsp1_rep	CDS	27045780	27046075	.	+	2	Parent=Os02t0666200-01
Chr02	irgsp1_rep	CDS	27046435	27046575	.	+	0	Parent=Os02t0666200-01
Chr02	irgsp1_rep	CDS	27047063	27047158	.	+	0	Parent=Os02t0666200-01
Chr02	irgsp1_rep	three_prime_UTR	27047159	27047381	.	+	.	Parent=Os02t0666200-01
Chr02	irgsp1_rep	mRNA	27044395	27047367	.	+	.	ID=Os02t0666200-02;Name=Os02t0666200-02;Locus_id=Os02g0666200;CGSNL Gene Symbol=PIP1A;CGSNL Gene Name=PLASMA MEMBRANE INTRINSIC PROTEIN 1A;Oryzabase Gene Symbol Synonym(s)=OsPIP1a%2C OsPIP1%3B1%2C PIP1a%2C RWC-1%2C PIP1-1%2C RWC1%2C OsPIP1-1%2C PIP1%3B1%2C PIP1-5;Oryzabase Gene Name Synonym(s)=Aquaporin PIP1-1%2C Plasma membrane intrinsic protein 1-1%2C Plasma membrane intrinsic protein 1a%2C Water channel protein RWC1%2C plasma membrane intrinsic protein 1-5;Note=Aquaporin.;Transcript_evidence=AK061769 (DDBJ%2C Best hit),AK104658 (DDBJ%2C Best hit);ORF_evidence=B7SDI4 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: water transport (GO:0006833),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Aquaporin (IPR012269),Major intrinsic protein%2C conserved site (IPR022357),Aquaporin-like (IPR023271);NIAS_FLcDNA=001-039-C05,006-311-D06;Oryzabase=6255;TENOR=Os02t0666200-02
Chr02	irgsp1_rep	five_prime_UTR	27044395	27044451	.	+	.	Parent=Os02t0666200-02
Chr02	irgsp1_rep	CDS	27044452	27044788	.	+	0	Parent=Os02t0666200-02
Chr02	irgsp1_rep	CDS	27045780	27046075	.	+	2	Parent=Os02t0666200-02
Chr02	irgsp1_rep	CDS	27046435	27046575	.	+	0	Parent=Os02t0666200-02
Chr02	irgsp1_rep	CDS	27047063	27047158	.	+	0	Parent=Os02t0666200-02
Chr02	irgsp1_rep	three_prime_UTR	27047159	27047367	.	+	.	Parent=Os02t0666200-02
Chr02	irgsp1_rep	mRNA	27046312	27046632	.	-	.	ID=Os02t0666250-00;Name=Os02t0666250-00;Locus_id=Os02g0666250;Note=Hypothetical gene.;Transcript_evidence=EU947829 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0666250-00;KEGG=Os02t0666250-00
Chr02	irgsp1_rep	five_prime_UTR	27046545	27046632	.	-	.	Parent=Os02t0666250-00
Chr02	irgsp1_rep	CDS	27046317	27046544	.	-	0	Parent=Os02t0666250-00
Chr02	irgsp1_rep	three_prime_UTR	27046312	27046316	.	-	.	Parent=Os02t0666250-00
Chr02	irgsp1_rep	mRNA	27048920	27061955	.	-	.	ID=Os02t0666300-01;Name=Os02t0666300-01;Locus_id=Os02g0666300;Oryzabase Gene Symbol Synonym(s)=YDA2%2C OsYDA2;Oryzabase Gene Name Synonym(s)=YODA 2%2C OsYODA2%2C YODA2;Note=Similar to MAP3Ka.;Transcript_evidence=AK073040 (DDBJ%2C Best hit);ORF_evidence=E5GCU1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033000A12;Oryzabase=20196;Expression=AK073040;TENOR=Os02t0666300-01;KEGG=Os02t0666300-01
Chr02	irgsp1_rep	five_prime_UTR	27061681	27061955	.	-	.	Parent=Os02t0666300-01
Chr02	irgsp1_rep	five_prime_UTR	27060458	27060652	.	-	.	Parent=Os02t0666300-01
Chr02	irgsp1_rep	CDS	27059913	27060457	.	-	0	Parent=Os02t0666300-01
Chr02	irgsp1_rep	CDS	27059075	27059815	.	-	1	Parent=Os02t0666300-01
Chr02	irgsp1_rep	CDS	27058568	27058655	.	-	1	Parent=Os02t0666300-01
Chr02	irgsp1_rep	CDS	27058426	27058488	.	-	0	Parent=Os02t0666300-01
Chr02	irgsp1_rep	CDS	27054057	27054217	.	-	0	Parent=Os02t0666300-01
Chr02	irgsp1_rep	CDS	27053875	27053950	.	-	1	Parent=Os02t0666300-01
Chr02	irgsp1_rep	CDS	27053303	27053362	.	-	0	Parent=Os02t0666300-01
Chr02	irgsp1_rep	CDS	27053076	27053183	.	-	0	Parent=Os02t0666300-01
Chr02	irgsp1_rep	CDS	27051563	27051796	.	-	0	Parent=Os02t0666300-01
Chr02	irgsp1_rep	CDS	27051204	27051295	.	-	0	Parent=Os02t0666300-01
Chr02	irgsp1_rep	CDS	27050023	27050539	.	-	1	Parent=Os02t0666300-01
Chr02	irgsp1_rep	three_prime_UTR	27049870	27050022	.	-	.	Parent=Os02t0666300-01
Chr02	irgsp1_rep	three_prime_UTR	27048920	27049336	.	-	.	Parent=Os02t0666300-01
Chr02	irgsp1_rep	mRNA	27063117	27065233	.	-	.	ID=Os02t0666500-01;Name=Os02t0666500-01;Locus_id=Os02g0666500;Note=Similar to CytoChrome P450.;Transcript_evidence=AK069029 (DDBJ%2C Best hit);ORF_evidence=Q9FVM8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J023003E06;Expression=AK069029;TENOR=Os02t0666500-01;KEGG=Os02t0666500-01
Chr02	irgsp1_rep	five_prime_UTR	27065101	27065233	.	-	.	Parent=Os02t0666500-01
Chr02	irgsp1_rep	CDS	27063502	27065100	.	-	0	Parent=Os02t0666500-01
Chr02	irgsp1_rep	three_prime_UTR	27063117	27063501	.	-	.	Parent=Os02t0666500-01
Chr02	irgsp1_rep	mRNA	27064898	27065125	.	+	.	ID=Os02t0666550-00;Name=Os02t0666550-00;Locus_id=Os02g0666550;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os02t0666550-00
Chr02	irgsp1_rep	CDS	27064898	27065125	.	+	0	Parent=Os02t0666550-00
Chr02	irgsp1_rep	mRNA	27073256	27074090	.	+	.	ID=Os02t0666600-01;Name=Os02t0666600-01;Locus_id=Os02g0666600;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK107463 (DDBJ%2C Best hit);ORF_evidence=B6TQZ4 (UniProt);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=002-129-A08;Expression=AK107463;TENOR=Os02t0666600-01;KEGG=Os02t0666600-01
Chr02	irgsp1_rep	five_prime_UTR	27073256	27073273	.	+	.	Parent=Os02t0666600-01
Chr02	irgsp1_rep	CDS	27073274	27073867	.	+	0	Parent=Os02t0666600-01
Chr02	irgsp1_rep	three_prime_UTR	27073868	27074090	.	+	.	Parent=Os02t0666600-01
Chr02	irgsp1_rep	mRNA	27077280	27079003	.	+	.	ID=Os02t0666700-01;Name=Os02t0666700-01;Locus_id=Os02g0666700;Note=Permease for cytosine/purines%2C uracil%2C thiamine%2C allantoin family protein.;Transcript_evidence=AK106879 (DDBJ%2C Best hit);ORF_evidence=NP_568122.2 (RefSeq);GO=Biological Process: nucleobase transport (GO:0015851),Cellular Component: membrane (GO:0016020),Molecular Function: nucleobase transmembrane transporter activity (GO:0015205);InterPro=Permease%2C cytosine/purines%2C uracil%2C thiamine%2C allantoin (IPR001248);NIAS_FLcDNA=002-118-E09;Expression=AK106879;TENOR=Os02t0666700-01;KEGG=Os02t0666700-01
Chr02	irgsp1_rep	five_prime_UTR	27077280	27077323	.	+	.	Parent=Os02t0666700-01
Chr02	irgsp1_rep	CDS	27077324	27078940	.	+	0	Parent=Os02t0666700-01
Chr02	irgsp1_rep	three_prime_UTR	27078941	27079003	.	+	.	Parent=Os02t0666700-01
Chr02	irgsp1_rep	mRNA	27079298	27082610	.	-	.	ID=Os02t0666800-01;Name=Os02t0666800-01;Locus_id=Os02g0666800;Note=Protein of unknown function DUF788 family protein.;Transcript_evidence=AK101444 (DDBJ%2C Best hit);ORF_evidence=A2X839 (UniProt);InterPro=Protein of unknown function DUF788%2C TMEM208 (IPR008506);NIAS_FLcDNA=J033039F09;Expression=AK101444;TENOR=Os02t0666800-01;KEGG=Os02t0666800-01
Chr02	irgsp1_rep	five_prime_UTR	27082561	27082610	.	-	.	Parent=Os02t0666800-01
Chr02	irgsp1_rep	CDS	27082477	27082560	.	-	0	Parent=Os02t0666800-01
Chr02	irgsp1_rep	CDS	27080965	27081158	.	-	0	Parent=Os02t0666800-01
Chr02	irgsp1_rep	CDS	27080545	27080629	.	-	1	Parent=Os02t0666800-01
Chr02	irgsp1_rep	CDS	27079706	27079774	.	-	0	Parent=Os02t0666800-01
Chr02	irgsp1_rep	CDS	27079523	27079615	.	-	0	Parent=Os02t0666800-01
Chr02	irgsp1_rep	three_prime_UTR	27079298	27079522	.	-	.	Parent=Os02t0666800-01
Chr02	irgsp1_rep	mRNA	27082915	27083644	.	+	.	ID=Os02t0666900-00;Name=Os02t0666900-00;Locus_id=Os02g0666900;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=AK376266 (DDBJ);ORF_evidence=Q6EU86 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);TENOR=Os02t0666900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	27082915	27082946	.	+	.	Parent=Os02t0666900-00
Chr02	irgsp1_rep	CDS	27082947	27083411	.	+	0	Parent=Os02t0666900-00
Chr02	irgsp1_rep	three_prime_UTR	27083412	27083644	.	+	.	Parent=Os02t0666900-00
Chr02	irgsp1_rep	mRNA	27084368	27085116	.	-	.	ID=Os02t0667000-01;Name=Os02t0667000-01;Locus_id=Os02g0667000;Note=Complex 1 LYR protein family protein.;Transcript_evidence=AK058849 (DDBJ%2C Best hit);ORF_evidence=B8AGD6 (UniProt);InterPro=Complex 1 LYR protein (IPR008011);NIAS_FLcDNA=001-004-H04;Expression=AK058849;TENOR=Os02t0667000-01;KEGG=Os02t0667000-01
Chr02	irgsp1_rep	five_prime_UTR	27085109	27085116	.	-	.	Parent=Os02t0667000-01
Chr02	irgsp1_rep	CDS	27085003	27085108	.	-	0	Parent=Os02t0667000-01
Chr02	irgsp1_rep	CDS	27084767	27084909	.	-	2	Parent=Os02t0667000-01
Chr02	irgsp1_rep	three_prime_UTR	27084368	27084766	.	-	.	Parent=Os02t0667000-01
Chr02	irgsp1_rep	mRNA	27086935	27087479	.	-	.	ID=Os02t0667050-00;Name=Os02t0667050-00;Locus_id=Os02g0667050;Note=Hypothetical gene.;Transcript_evidence=CT835501 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os02t0667050-00;KEGG=Os02t0667050-00
Chr02	irgsp1_rep	five_prime_UTR	27087478	27087479	.	-	.	Parent=Os02t0667050-00
Chr02	irgsp1_rep	CDS	27087148	27087477	.	-	0	Parent=Os02t0667050-00
Chr02	irgsp1_rep	three_prime_UTR	27086935	27087147	.	-	.	Parent=Os02t0667050-00
Chr02	irgsp1_rep	mRNA	27092039	27092735	.	-	.	ID=Os02t0667100-00;Name=Os02t0667100-00;Locus_id=Os02g0667100;Note=Conserved hypothetical protein.;Transcript_evidence=AK370258 (DDBJ);ORF_evidence=NP_001047679.1 (RefSeq);TENOR=Os02t0667100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	27092688	27092735	.	-	.	Parent=Os02t0667100-00
Chr02	irgsp1_rep	CDS	27092259	27092687	.	-	0	Parent=Os02t0667100-00
Chr02	irgsp1_rep	three_prime_UTR	27092039	27092258	.	-	.	Parent=Os02t0667100-00
Chr02	irgsp1_rep	mRNA	27097794	27098562	.	-	.	ID=Os02t0667300-01;Name=Os02t0667300-01;Locus_id=Os02g0667300;Note=Alcohol dehydrogenase superfamily%2C zinc-containing protein.;Transcript_evidence=AK058228 (DDBJ%2C Best hit),AK099066 (DDBJ%2C Best hit);ORF_evidence=A2X842 (UniProt);NIAS_FLcDNA=001-010-H12,J013166I11;Expression=AK058228;TENOR=Os02t0667300-01;KEGG=Os02t0667300-01
Chr02	irgsp1_rep	five_prime_UTR	27098468	27098562	.	-	.	Parent=Os02t0667300-01
Chr02	irgsp1_rep	CDS	27098075	27098467	.	-	0	Parent=Os02t0667300-01
Chr02	irgsp1_rep	three_prime_UTR	27097794	27098074	.	-	.	Parent=Os02t0667300-01
Chr02	irgsp1_rep	mRNA	27103466	27105886	.	+	.	ID=Os02t0667500-01;Name=Os02t0667500-01;Locus_id=Os02g0667500;Note=Similar to tetracycline transporter protein.;Transcript_evidence=AK059662 (DDBJ%2C Best hit);ORF_evidence=NP_001151277.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=001-031-E03;TENOR=Os02t0667500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	27103466	27103515	.	+	.	Parent=Os02t0667500-01
Chr02	irgsp1_rep	CDS	27103516	27103886	.	+	0	Parent=Os02t0667500-01
Chr02	irgsp1_rep	CDS	27104022	27104097	.	+	1	Parent=Os02t0667500-01
Chr02	irgsp1_rep	CDS	27104189	27104275	.	+	0	Parent=Os02t0667500-01
Chr02	irgsp1_rep	CDS	27104392	27104472	.	+	0	Parent=Os02t0667500-01
Chr02	irgsp1_rep	CDS	27104567	27104599	.	+	0	Parent=Os02t0667500-01
Chr02	irgsp1_rep	CDS	27104842	27104895	.	+	0	Parent=Os02t0667500-01
Chr02	irgsp1_rep	CDS	27104989	27105030	.	+	0	Parent=Os02t0667500-01
Chr02	irgsp1_rep	CDS	27105156	27105234	.	+	0	Parent=Os02t0667500-01
Chr02	irgsp1_rep	CDS	27105320	27105390	.	+	2	Parent=Os02t0667500-01
Chr02	irgsp1_rep	CDS	27105465	27105554	.	+	0	Parent=Os02t0667500-01
Chr02	irgsp1_rep	three_prime_UTR	27105555	27105886	.	+	.	Parent=Os02t0667500-01
Chr02	irgsp1_rep	mRNA	27103503	27105879	.	+	.	ID=Os02t0667500-02;Name=Os02t0667500-02;Locus_id=Os02g0667500;Note=Hypothetical conserved gene.;Transcript_evidence=AK072754 (DDBJ%2C Best hit);ORF_evidence=A2X843 (UniProt);NIAS_FLcDNA=J023138H15;Expression=AK072754;TENOR=Os02t0667500-02;KEGG=Os02t0667500-02
Chr02	irgsp1_rep	five_prime_UTR	27103503	27103515	.	+	.	Parent=Os02t0667500-02
Chr02	irgsp1_rep	CDS	27103516	27103953	.	+	0	Parent=Os02t0667500-02
Chr02	irgsp1_rep	three_prime_UTR	27103954	27104275	.	+	.	Parent=Os02t0667500-02
Chr02	irgsp1_rep	three_prime_UTR	27104392	27104472	.	+	.	Parent=Os02t0667500-02
Chr02	irgsp1_rep	three_prime_UTR	27104567	27104895	.	+	.	Parent=Os02t0667500-02
Chr02	irgsp1_rep	three_prime_UTR	27104989	27105030	.	+	.	Parent=Os02t0667500-02
Chr02	irgsp1_rep	three_prime_UTR	27105156	27105234	.	+	.	Parent=Os02t0667500-02
Chr02	irgsp1_rep	three_prime_UTR	27105320	27105390	.	+	.	Parent=Os02t0667500-02
Chr02	irgsp1_rep	three_prime_UTR	27105465	27105879	.	+	.	Parent=Os02t0667500-02
Chr02	irgsp1_rep	mRNA	27106841	27110712	.	-	.	ID=Os02t0667600-01;Name=Os02t0667600-01;Locus_id=Os02g0667600;Note=Similar to cDNA clone:002-146-F05%2C full insert sequence.;Transcript_evidence=AK109816 (DDBJ%2C Best hit);ORF_evidence=B7F2N7 (UniProt);NIAS_FLcDNA=002-147-H09;Expression=AK109816;TENOR=Os02t0667600-01;KEGG=Os02t0667600-01
Chr02	irgsp1_rep	five_prime_UTR	27110601	27110712	.	-	.	Parent=Os02t0667600-01
Chr02	irgsp1_rep	CDS	27110395	27110600	.	-	0	Parent=Os02t0667600-01
Chr02	irgsp1_rep	CDS	27108340	27108364	.	-	1	Parent=Os02t0667600-01
Chr02	irgsp1_rep	three_prime_UTR	27106841	27108339	.	-	.	Parent=Os02t0667600-01
Chr02	irgsp1_rep	mRNA	27107603	27110709	.	-	.	ID=Os02t0667600-02;Name=Os02t0667600-02;Locus_id=Os02g0667600;Note=Hypothetical conserved gene.;Transcript_evidence=AK109748 (DDBJ%2C Best hit);ORF_evidence=B8AGD7 (UniProt);NIAS_FLcDNA=002-146-F05;Expression=AK109748;TENOR=Os02t0667600-02;KEGG=Os02t0667600-02
Chr02	irgsp1_rep	five_prime_UTR	27110601	27110709	.	-	.	Parent=Os02t0667600-02
Chr02	irgsp1_rep	CDS	27110079	27110600	.	-	0	Parent=Os02t0667600-02
Chr02	irgsp1_rep	CDS	27109140	27109433	.	-	0	Parent=Os02t0667600-02
Chr02	irgsp1_rep	three_prime_UTR	27107603	27109139	.	-	.	Parent=Os02t0667600-02
Chr02	irgsp1_rep	mRNA	27105876	27110649	.	-	.	ID=Os02t0667600-03;Name=Os02t0667600-03;Locus_id=Os02g0667600;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK073500 (DDBJ%2C Best hit);ORF_evidence=B7F2N7 (UniProt);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=J033044J15;Expression=AK073500;TENOR=Os02t0667600-03;KEGG=Os02t0667600-03
Chr02	irgsp1_rep	five_prime_UTR	27110601	27110649	.	-	.	Parent=Os02t0667600-03
Chr02	irgsp1_rep	CDS	27110079	27110600	.	-	0	Parent=Os02t0667600-03
Chr02	irgsp1_rep	CDS	27109248	27109433	.	-	0	Parent=Os02t0667600-03
Chr02	irgsp1_rep	CDS	27106066	27106371	.	-	0	Parent=Os02t0667600-03
Chr02	irgsp1_rep	three_prime_UTR	27105876	27106065	.	-	.	Parent=Os02t0667600-03
Chr02	irgsp1_rep	mRNA	27118006	27122427	.	+	.	ID=Os02t0668000-01;Name=Os02t0668000-01;Locus_id=Os02g0668000;Note=Membrane protein%2C At2g17000%2C predicted domain containing protein.;Transcript_evidence=AK101871 (DDBJ%2C Best hit);ORF_evidence=Q2L3D9 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020);InterPro=Mechanosensitive ion channel MscS (IPR006685),Like-Sm ribonucleoprotein (LSM)-related domain (IPR010920),Membrane protein%2C At2g17000%2C predicted (IPR016688);NIAS_FLcDNA=J033070F06;Expression=AK101871;TENOR=Os02t0668000-01;KEGG=Os02t0668000-01
Chr02	irgsp1_rep	five_prime_UTR	27118006	27118096	.	+	.	Parent=Os02t0668000-01
Chr02	irgsp1_rep	CDS	27118097	27120117	.	+	0	Parent=Os02t0668000-01
Chr02	irgsp1_rep	CDS	27120440	27120563	.	+	1	Parent=Os02t0668000-01
Chr02	irgsp1_rep	CDS	27120908	27121201	.	+	0	Parent=Os02t0668000-01
Chr02	irgsp1_rep	CDS	27121283	27121485	.	+	0	Parent=Os02t0668000-01
Chr02	irgsp1_rep	CDS	27121814	27122096	.	+	1	Parent=Os02t0668000-01
Chr02	irgsp1_rep	three_prime_UTR	27122097	27122427	.	+	.	Parent=Os02t0668000-01
Chr02	irgsp1_rep	mRNA	27119474	27120337	.	+	.	ID=Os02t0668000-02;Name=Os02t0668000-02;Locus_id=Os02g0668000;Note=Hypothetical protein.;Transcript_evidence=AK108411 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=002-142-H02;TENOR=Os02t0668000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	27119474	27120121	.	+	0	Parent=Os02t0668000-02
Chr02	irgsp1_rep	three_prime_UTR	27120122	27120337	.	+	.	Parent=Os02t0668000-02
Chr02	irgsp1_rep	mRNA	27122316	27124462	.	-	.	ID=Os02t0668100-01;Name=Os02t0668100-01;Locus_id=Os02g0668100;CGSNL Gene Symbol=GGPPS2;CGSNL Gene Name=GERANYLGERANYL DIPHOSPHATE SYNTHASE 2;Oryzabase Gene Symbol Synonym(s)=OsGGPPS2%2C OsGRP%2C GRP;Oryzabase Gene Name Synonym(s)=geranylgeranyl diphosphate synthase 2%2C GGPPS recruiting protein;Note=Similar to Geranylgeranyl-diphosphate synthase.;Transcript_evidence=AK111401 (DDBJ%2C Best hit);ORF_evidence=A9ZN21 (UniProt);GO=Biological Process: isoprenoid biosynthetic process (GO:0008299);InterPro=Polyprenyl synthetase (IPR000092),Terpenoid synthase (IPR008949),Polyprenyl synthetase-related (IPR017446);NIAS_FLcDNA=002-182-E03;Oryzabase=11202;TENOR=Os02t0668100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	27124395	27124462	.	-	.	Parent=Os02t0668100-01
Chr02	irgsp1_rep	CDS	27123366	27124394	.	-	0	Parent=Os02t0668100-01
Chr02	irgsp1_rep	three_prime_UTR	27123275	27123365	.	-	.	Parent=Os02t0668100-01
Chr02	irgsp1_rep	three_prime_UTR	27122316	27122816	.	-	.	Parent=Os02t0668100-01
Chr02	irgsp1_rep	mRNA	27123046	27124437	.	-	.	ID=Os02t0668100-02;Name=Os02t0668100-02;Locus_id=Os02g0668100;CGSNL Gene Symbol=GGPPS2;CGSNL Gene Name=GERANYLGERANYL DIPHOSPHATE SYNTHASE 2;Oryzabase Gene Symbol Synonym(s)=OsGGPPS2%2C OsGRP%2C GRP;Oryzabase Gene Name Synonym(s)=geranylgeranyl diphosphate synthase 2%2C GGPPS recruiting protein;Note=Similar to Geranylgeranyl-diphosphate synthase.;Transcript_evidence=AK100459 (DDBJ%2C Best hit);ORF_evidence=A9ZN21 (UniProt);GO=Biological Process: isoprenoid biosynthetic process (GO:0008299);InterPro=Polyprenyl synthetase (IPR000092),Terpenoid synthase (IPR008949),Polyprenyl synthetase-related (IPR017446);NIAS_FLcDNA=J023091L04;Oryzabase=11202;TENOR=Os02t0668100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	27124395	27124437	.	-	.	Parent=Os02t0668100-02
Chr02	irgsp1_rep	CDS	27123366	27124394	.	-	0	Parent=Os02t0668100-02
Chr02	irgsp1_rep	three_prime_UTR	27123046	27123365	.	-	.	Parent=Os02t0668100-02
Chr02	irgsp1_rep	mRNA	27120685	27124417	.	-	.	ID=Os02t0668100-03;Name=Os02t0668100-03;Locus_id=Os02g0668100;CGSNL Gene Symbol=GGPPS2;CGSNL Gene Name=GERANYLGERANYL DIPHOSPHATE SYNTHASE 2;Oryzabase Gene Symbol Synonym(s)=OsGGPPS2%2C OsGRP%2C GRP;Oryzabase Gene Name Synonym(s)=geranylgeranyl diphosphate synthase 2%2C GGPPS recruiting protein;Note=Similar to Geranylgeranyl-diphosphate synthase.;Transcript_evidence=AK105878 (DDBJ%2C Best hit);ORF_evidence=A9ZN21 (UniProt);GO=Biological Process: isoprenoid biosynthetic process (GO:0008299);InterPro=Polyprenyl synthetase (IPR000092),Terpenoid synthase (IPR008949),Polyprenyl synthetase-related (IPR017446);NIAS_FLcDNA=001-204-C07;Oryzabase=11202;TENOR=Os02t0668100-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	27124395	27124417	.	-	.	Parent=Os02t0668100-03
Chr02	irgsp1_rep	CDS	27123366	27124394	.	-	0	Parent=Os02t0668100-03
Chr02	irgsp1_rep	three_prime_UTR	27123275	27123365	.	-	.	Parent=Os02t0668100-03
Chr02	irgsp1_rep	three_prime_UTR	27120685	27121179	.	-	.	Parent=Os02t0668100-03
Chr02	irgsp1_rep	mRNA	27122983	27124137	.	-	.	ID=Os02t0668100-04;Name=Os02t0668100-04;Locus_id=Os02g0668100;CGSNL Gene Symbol=GGPPS2;CGSNL Gene Name=GERANYLGERANYL DIPHOSPHATE SYNTHASE 2;Oryzabase Gene Symbol Synonym(s)=OsGGPPS2%2C OsGRP%2C GRP;Oryzabase Gene Name Synonym(s)=geranylgeranyl diphosphate synthase 2%2C GGPPS recruiting protein;Note=Similar to predicted protein.;Transcript_evidence=AK106165 (DDBJ%2C Best hit);ORF_evidence=A9ZN21 (UniProt);GO=Biological Process: isoprenoid biosynthetic process (GO:0008299);InterPro=Polyprenyl synthetase (IPR000092),Terpenoid synthase (IPR008949),Polyprenyl synthetase-related (IPR017446);NIAS_FLcDNA=001-208-B06;Oryzabase=11202;Expression=AK106165;TENOR=Os02t0668100-04;KEGG=Os02t0668100-04
Chr02	irgsp1_rep	five_prime_UTR	27124137	27124137	.	-	.	Parent=Os02t0668100-04
Chr02	irgsp1_rep	CDS	27123366	27124136	.	-	0	Parent=Os02t0668100-04
Chr02	irgsp1_rep	three_prime_UTR	27122983	27123365	.	-	.	Parent=Os02t0668100-04
Chr02	irgsp1_rep	mRNA	27133978	27134211	.	-	.	ID=Os02t0668350-00;Name=Os02t0668350-00;Locus_id=Os02g0668350;Note=Similar to predicted protein.;Transcript_evidence=AK335557 (DDBJ);ORF_evidence=XP_001779700.1 (RefSeq);TENOR=Os02t0668350-00;KEGG=Os02t0668350-00
Chr02	irgsp1_rep	CDS	27133978	27134211	.	-	0	Parent=Os02t0668350-00
Chr02	irgsp1_rep	mRNA	27134555	27136681	.	+	.	ID=Os02t0668400-00;Name=Os02t0668400-00;Locus_id=Os02g0668400;Note=tRNA pseudouridine synthase family protein.;Transcript_evidence=tplb0002p21 (Wheat FLcDNA);ORF_evidence=B6TLN6 (UniProt);GO=Biological Process: pseudouridine synthesis (GO:0001522),Biological Process: RNA modification (GO:0009451),Molecular Function: RNA binding (GO:0003723),Molecular Function: pseudouridine synthase activity (GO:0009982);InterPro=Pseudouridine synthase I%2C TruA (IPR001406),Pseudouridine synthase I%2C TruA%2C N-terminal (IPR020094),Pseudouridine synthase I%2C TruA%2C C-terminal (IPR020095),Pseudouridine synthase I%2C TruA%2C alpha/beta domain (IPR020097),Pseudouridine synthase%2C catalytic domain (IPR020103);TENOR=Os02t0668400-00;KEGG=Os02t0668400-00 (EC:5.4.99.12)
Chr02	irgsp1_rep	CDS	27134555	27135960	.	+	0	Parent=Os02t0668400-00
Chr02	irgsp1_rep	CDS	27136053	27136392	.	+	1	Parent=Os02t0668400-00
Chr02	irgsp1_rep	three_prime_UTR	27136393	27136681	.	+	.	Parent=Os02t0668400-00
Chr02	irgsp1_rep	mRNA	27137236	27138285	.	-	.	ID=Os02t0668500-01;Name=Os02t0668500-01;Locus_id=Os02g0668500;Note=Cellular retinaldehyde-binding/triple function%2C C-terminal domain containing protein.;Transcript_evidence=AK071867 (DDBJ%2C Best hit);ORF_evidence=NP_001147236.1 (RefSeq);NIAS_FLcDNA=J023117I15;Expression=AK071867;TENOR=Os02t0668500-01;KEGG=Os02t0668500-01
Chr02	irgsp1_rep	five_prime_UTR	27138238	27138285	.	-	.	Parent=Os02t0668500-01
Chr02	irgsp1_rep	CDS	27138099	27138237	.	-	0	Parent=Os02t0668500-01
Chr02	irgsp1_rep	CDS	27137735	27138008	.	-	2	Parent=Os02t0668500-01
Chr02	irgsp1_rep	CDS	27137412	27137634	.	-	1	Parent=Os02t0668500-01
Chr02	irgsp1_rep	three_prime_UTR	27137236	27137411	.	-	.	Parent=Os02t0668500-01
Chr02	irgsp1_rep	mRNA	27137230	27138257	.	-	.	ID=Os02t0668500-02;Name=Os02t0668500-02;Locus_id=Os02g0668500;Note=Similar to cellular retinaldehyde-binding/triple function%2C C-terminal.;Transcript_evidence=AK060958 (DDBJ%2C Best hit);ORF_evidence=NP_001147236.1 (RefSeq);NIAS_FLcDNA=006-201-H07;Expression=AK060958;TENOR=Os02t0668500-02;KEGG=Os02t0668500-02
Chr02	irgsp1_rep	five_prime_UTR	27138238	27138257	.	-	.	Parent=Os02t0668500-02
Chr02	irgsp1_rep	CDS	27137536	27138237	.	-	0	Parent=Os02t0668500-02
Chr02	irgsp1_rep	three_prime_UTR	27137230	27137535	.	-	.	Parent=Os02t0668500-02
Chr02	irgsp1_rep	mRNA	27148056	27149208	.	+	.	ID=Os02t0668700-00;Name=Os02t0668700-00;Locus_id=Os02g0668700;Note=Non-protein coding transcript.;Transcript_evidence=FP099059 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0668700-00
Chr02	irgsp1_rep	exon	27148056	27148358	.	+	.	Parent=Os02t0668700-00
Chr02	irgsp1_rep	exon	27148715	27149208	.	+	.	Parent=Os02t0668700-00
Chr02	irgsp1_rep	mRNA	27156852	27158339	.	-	.	ID=Os02t0668900-00;Name=Os02t0668900-00;Locus_id=Os02g0668900;CGSNL Gene Symbol=GELP41;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 41;Oryzabase Gene Symbol Synonym(s)=OsGELP41;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 41;Note=Similar to H0211B05.3 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01JA9 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);Oryzabase=10991;TENOR=Os02t0668900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	27158206	27158339	.	-	0	Parent=Os02t0668900-00
Chr02	irgsp1_rep	CDS	27157738	27158039	.	-	1	Parent=Os02t0668900-00
Chr02	irgsp1_rep	CDS	27157516	27157649	.	-	2	Parent=Os02t0668900-00
Chr02	irgsp1_rep	CDS	27156852	27157397	.	-	0	Parent=Os02t0668900-00
Chr02	irgsp1_rep	mRNA	27158353	27162721	.	-	.	ID=Os02t0669000-01;Name=Os02t0669000-01;Locus_id=Os02g0669000;CGSNL Gene Symbol=GELP42;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 42;Oryzabase Gene Symbol Synonym(s)=OsGELP42;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 42;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK059531 (DDBJ%2C Best hit),AK103585 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=001-029-D08,J033133B12;Oryzabase=10992;TENOR=Os02t0669000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	27162436	27162721	.	-	0	Parent=Os02t0669000-01
Chr02	irgsp1_rep	CDS	27159645	27159775	.	-	2	Parent=Os02t0669000-01
Chr02	irgsp1_rep	CDS	27159325	27159561	.	-	0	Parent=Os02t0669000-01
Chr02	irgsp1_rep	CDS	27158983	27159232	.	-	0	Parent=Os02t0669000-01
Chr02	irgsp1_rep	CDS	27158674	27158900	.	-	2	Parent=Os02t0669000-01
Chr02	irgsp1_rep	three_prime_UTR	27158353	27158673	.	-	.	Parent=Os02t0669000-01
Chr02	irgsp1_rep	mRNA	27165514	27166898	.	-	.	ID=Os02t0669100-01;Name=Os02t0669100-01;Locus_id=Os02g0669100;CGSNL Gene Symbol=DHN1;CGSNL Gene Name=DEHYDRIN 1;Oryzabase Gene Symbol Synonym(s)=LIP9%2C OsLIP9%2C lip9%2C DHN1%2C DIP1%2C OsDip1%2C OsLEA23%2C OsDhn1%2C COR410%2C OsLEA23/DIP1%2C DIP1/OsLEA23;Oryzabase Gene Name Synonym(s)=Dehydration-stress inducible protein 1%2C Dehydration Stress-inducible Protein 1%2C late embryogenesis abundant protein 23%2C SK3-type dehydrin;Note=Dehydrin family protein.;Transcript_evidence=AK070197 (DDBJ%2C Best hit);ORF_evidence=B1NEV7 (UniProt);GO=Biological Process: response to stress (GO:0006950),Biological Process: response to water (GO:0009415);InterPro=Dehydrin (IPR000167);NIAS_FLcDNA=J023042N13;Oryzabase=9276;Expression=AK070197;TENOR=Os02t0669100-01;KEGG=Os02t0669100-01
Chr02	irgsp1_rep	five_prime_UTR	27166780	27166898	.	-	.	Parent=Os02t0669100-01
Chr02	irgsp1_rep	CDS	27166516	27166779	.	-	0	Parent=Os02t0669100-01
Chr02	irgsp1_rep	CDS	27165813	27166421	.	-	0	Parent=Os02t0669100-01
Chr02	irgsp1_rep	three_prime_UTR	27165514	27165812	.	-	.	Parent=Os02t0669100-01
Chr02	irgsp1_rep	mRNA	27183081	27184055	.	-	.	ID=Os02t0669366-00;Name=Os02t0669366-00;Locus_id=Os02g0669366;Note=Hypothetical gene.;Transcript_evidence=EU942482 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0669366-00
Chr02	irgsp1_rep	five_prime_UTR	27184036	27184055	.	-	.	Parent=Os02t0669366-00
Chr02	irgsp1_rep	CDS	27183081	27184035	.	-	0	Parent=Os02t0669366-00
Chr02	irgsp1_rep	mRNA	27183731	27184188	.	+	.	ID=Os02t0669500-01;Name=Os02t0669500-01;Locus_id=Os02g0669500;Note=Similar to H0211B05.7 protein.;Transcript_evidence=AK111117 (DDBJ%2C Best hit);ORF_evidence=Q01JA5 (UniProt);InterPro=Protein of unknown function DUF241%2C plant (IPR004320);NIAS_FLcDNA=002-176-B10;TENOR=Os02t0669500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	27183731	27184054	.	+	0	Parent=Os02t0669500-01
Chr02	irgsp1_rep	three_prime_UTR	27184055	27184188	.	+	.	Parent=Os02t0669500-01
Chr02	irgsp1_rep	mRNA	27188020	27191898	.	-	.	ID=Os02t0669700-01;Name=Os02t0669700-01;Locus_id=Os02g0669700;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK064519 (DDBJ%2C Best hit);ORF_evidence=Q9ST90 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=002-111-F10;Expression=AK064519;TENOR=Os02t0669700-01;KEGG=Os02t0669700-01
Chr02	irgsp1_rep	five_prime_UTR	27191826	27191898	.	-	.	Parent=Os02t0669700-01
Chr02	irgsp1_rep	five_prime_UTR	27191637	27191736	.	-	.	Parent=Os02t0669700-01
Chr02	irgsp1_rep	five_prime_UTR	27190490	27190612	.	-	.	Parent=Os02t0669700-01
Chr02	irgsp1_rep	five_prime_UTR	27189559	27189571	.	-	.	Parent=Os02t0669700-01
Chr02	irgsp1_rep	CDS	27189103	27189558	.	-	0	Parent=Os02t0669700-01
Chr02	irgsp1_rep	CDS	27188341	27188490	.	-	0	Parent=Os02t0669700-01
Chr02	irgsp1_rep	three_prime_UTR	27188020	27188340	.	-	.	Parent=Os02t0669700-01
Chr02	irgsp1_rep	mRNA	27204540	27207676	.	+	.	ID=Os02t0669900-01;Name=Os02t0669900-01;Locus_id=Os02g0669900;Note=Similar to H0211B05.8 protein.;Transcript_evidence=AK064019 (DDBJ%2C Best hit);ORF_evidence=Q01JA4 (UniProt);InterPro=Domain of unknown function DUF632 (IPR006867);NIAS_FLcDNA=001-124-H12;TENOR=Os02t0669900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	27204540	27204705	.	+	0	Parent=Os02t0669900-01
Chr02	irgsp1_rep	CDS	27204804	27204967	.	+	2	Parent=Os02t0669900-01
Chr02	irgsp1_rep	CDS	27205906	27206129	.	+	0	Parent=Os02t0669900-01
Chr02	irgsp1_rep	CDS	27206571	27207300	.	+	1	Parent=Os02t0669900-01
Chr02	irgsp1_rep	three_prime_UTR	27207301	27207676	.	+	.	Parent=Os02t0669900-01
Chr02	irgsp1_rep	mRNA	27208208	27212638	.	-	.	ID=Os02t0670000-01;Name=Os02t0670000-01;Locus_id=Os02g0670000;Note=Protein of unknown function DUF300 family protein.;Transcript_evidence=AK073148 (DDBJ%2C Best hit);ORF_evidence=Q01J99 (UniProt);InterPro=Protein of unknown function DUF300 (IPR005178);NIAS_FLcDNA=J033004P03;Expression=AK073148;TENOR=Os02t0670000-01;KEGG=Os02t0670000-01
Chr02	irgsp1_rep	five_prime_UTR	27212497	27212638	.	-	.	Parent=Os02t0670000-01
Chr02	irgsp1_rep	five_prime_UTR	27211683	27211852	.	-	.	Parent=Os02t0670000-01
Chr02	irgsp1_rep	CDS	27211530	27211682	.	-	0	Parent=Os02t0670000-01
Chr02	irgsp1_rep	CDS	27211387	27211443	.	-	0	Parent=Os02t0670000-01
Chr02	irgsp1_rep	CDS	27211178	27211286	.	-	0	Parent=Os02t0670000-01
Chr02	irgsp1_rep	CDS	27210175	27210359	.	-	2	Parent=Os02t0670000-01
Chr02	irgsp1_rep	CDS	27210006	27210094	.	-	0	Parent=Os02t0670000-01
Chr02	irgsp1_rep	CDS	27209440	27209701	.	-	1	Parent=Os02t0670000-01
Chr02	irgsp1_rep	CDS	27209015	27209266	.	-	0	Parent=Os02t0670000-01
Chr02	irgsp1_rep	CDS	27208471	27208791	.	-	0	Parent=Os02t0670000-01
Chr02	irgsp1_rep	three_prime_UTR	27208208	27208470	.	-	.	Parent=Os02t0670000-01
Chr02	irgsp1_rep	mRNA	27215205	27217721	.	-	.	ID=Os02t0670100-00;Name=Os02t0670100-00;Locus_id=Os02g0670100;CGSNL Gene Symbol=RLCK82;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 82;Oryzabase Gene Symbol Synonym(s)=OsRLCK82;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 82;Note=Similar to protein kinase APK1B.;Transcript_evidence=AK374402 (DDBJ);ORF_evidence=NP_001148215.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18793;TENOR=Os02t0670100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	27217720	27217721	.	-	.	Parent=Os02t0670100-00
Chr02	irgsp1_rep	CDS	27217594	27217719	.	-	0	Parent=Os02t0670100-00
Chr02	irgsp1_rep	CDS	27217054	27217425	.	-	0	Parent=Os02t0670100-00
Chr02	irgsp1_rep	CDS	27216513	27216660	.	-	0	Parent=Os02t0670100-00
Chr02	irgsp1_rep	CDS	27215929	27216080	.	-	2	Parent=Os02t0670100-00
Chr02	irgsp1_rep	CDS	27215241	27215831	.	-	0	Parent=Os02t0670100-00
Chr02	irgsp1_rep	three_prime_UTR	27215205	27215240	.	-	.	Parent=Os02t0670100-00
Chr02	irgsp1_rep	mRNA	27215225	27215836	.	+	.	ID=Os02t0670200-00;Name=Os02t0670200-00;Locus_id=Os02g0670200;Note=Hypothetical protein.;Transcript_evidence=EU943065 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0670200-00
Chr02	irgsp1_rep	five_prime_UTR	27215225	27215225	.	+	.	Parent=Os02t0670200-00
Chr02	irgsp1_rep	CDS	27215226	27215836	.	+	0	Parent=Os02t0670200-00
Chr02	irgsp1_rep	mRNA	27221189	27221234	.	+	.	ID=Os02t0670300-00;Name=Os02t0670300-00;Locus_id=Os02g0670300;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0670300-00
Chr02	irgsp1_rep	exon	27221189	27221234	.	+	.	Parent=Os02t0670300-00
Chr02	irgsp1_rep	mRNA	27225269	27226956	.	+	.	ID=Os02t0670400-01;Name=Os02t0670400-01;Locus_id=Os02g0670400;Oryzabase Gene Name Synonym(s)=high-mobility group protein;Note=Similar to HMGc1 protein.;Transcript_evidence=AK242556 (DDBJ%2C Best hit);ORF_evidence=Q8SBC5 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=High mobility group%2C HMG1/HMG2 (IPR000910),High mobility group%2C superfamily (IPR009071);NIAS_FLcDNA=J090001B08;Oryzabase=17628;TENOR=Os02t0670400-01;KEGG=Os02t0670400-01
Chr02	irgsp1_rep	five_prime_UTR	27225269	27225404	.	+	.	Parent=Os02t0670400-01
Chr02	irgsp1_rep	CDS	27225405	27225445	.	+	0	Parent=Os02t0670400-01
Chr02	irgsp1_rep	CDS	27225575	27225664	.	+	1	Parent=Os02t0670400-01
Chr02	irgsp1_rep	CDS	27225800	27225857	.	+	1	Parent=Os02t0670400-01
Chr02	irgsp1_rep	CDS	27225948	27225992	.	+	0	Parent=Os02t0670400-01
Chr02	irgsp1_rep	CDS	27226285	27226362	.	+	0	Parent=Os02t0670400-01
Chr02	irgsp1_rep	CDS	27226447	27226548	.	+	0	Parent=Os02t0670400-01
Chr02	irgsp1_rep	CDS	27226657	27226680	.	+	0	Parent=Os02t0670400-01
Chr02	irgsp1_rep	three_prime_UTR	27226681	27226956	.	+	.	Parent=Os02t0670400-01
Chr02	irgsp1_rep	mRNA	27228831	27229723	.	+	.	ID=Os02t0670500-01;Name=Os02t0670500-01;Locus_id=Os02g0670500;CGSNL Gene Symbol=RALF8;CGSNL Gene Name=RAPID ALKALIZATION FACTOR 8;Oryzabase Gene Symbol Synonym(s)=OsRALF-8%2C OsRALF8%2C RALF-8;Oryzabase Gene Name Synonym(s)=Rapid alkalization factor 8;Note=Rapid ALkalinization Factor family protein.;Transcript_evidence=AK243417 (DDBJ%2C Best hit);ORF_evidence=NP_001149446.1 (RefSeq);InterPro=Rapid ALkalinization Factor (IPR008801);NIAS_FLcDNA=J100066I03;Oryzabase=21112;TENOR=Os02t0670500-01;KEGG=Os02t0670500-01
Chr02	irgsp1_rep	five_prime_UTR	27228831	27228955	.	+	.	Parent=Os02t0670500-01
Chr02	irgsp1_rep	CDS	27228956	27229315	.	+	0	Parent=Os02t0670500-01
Chr02	irgsp1_rep	three_prime_UTR	27229316	27229723	.	+	.	Parent=Os02t0670500-01
Chr02	irgsp1_rep	mRNA	27237052	27241155	.	-	.	ID=Os02t0670700-01;Name=Os02t0670700-01;Locus_id=Os02g0670700;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK318538 (DDBJ%2C Best hit);ORF_evidence=NP_001173110.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J065207N13;TENOR=Os02t0670700-01;KEGG=Os02t0670700-01
Chr02	irgsp1_rep	five_prime_UTR	27240721	27241155	.	-	.	Parent=Os02t0670700-01
Chr02	irgsp1_rep	CDS	27238657	27240720	.	-	0	Parent=Os02t0670700-01
Chr02	irgsp1_rep	three_prime_UTR	27238623	27238656	.	-	.	Parent=Os02t0670700-01
Chr02	irgsp1_rep	three_prime_UTR	27238403	27238537	.	-	.	Parent=Os02t0670700-01
Chr02	irgsp1_rep	three_prime_UTR	27238082	27238138	.	-	.	Parent=Os02t0670700-01
Chr02	irgsp1_rep	three_prime_UTR	27237823	27237887	.	-	.	Parent=Os02t0670700-01
Chr02	irgsp1_rep	three_prime_UTR	27237519	27237675	.	-	.	Parent=Os02t0670700-01
Chr02	irgsp1_rep	three_prime_UTR	27237052	27237428	.	-	.	Parent=Os02t0670700-01
Chr02	irgsp1_rep	mRNA	27244843	27246897	.	+	.	ID=Os02t0670900-02;Name=Os02t0670900-02;Locus_id=Os02g0670900;Oryzabase Gene Symbol Synonym(s)=OsANT3;Oryzabase Gene Name Synonym(s)=aromatic and neutral amino acid transporter 3;Note=Similar to amino acid transport protein.;Transcript_evidence=AK119517 (DDBJ%2C Best hit),AK061743 (DDBJ%2C Best hit),AK064827 (DDBJ%2C Best hit),AK100650 (DDBJ%2C Best hit);ORF_evidence=NP_001149493.1 (RefSeq);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=001-202-C05,001-038-F02,J013000F07,J023111D06;Oryzabase=18517;TENOR=Os02t0670900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	27244843	27244873	.	+	.	Parent=Os02t0670900-02
Chr02	irgsp1_rep	CDS	27244874	27246337	.	+	0	Parent=Os02t0670900-02
Chr02	irgsp1_rep	three_prime_UTR	27246338	27246897	.	+	.	Parent=Os02t0670900-02
Chr02	irgsp1_rep	mRNA	27245220	27246916	.	+	.	ID=Os02t0670900-05;Name=Os02t0670900-05;Locus_id=Os02g0670900;Oryzabase Gene Symbol Synonym(s)=OsANT3;Oryzabase Gene Name Synonym(s)=aromatic and neutral amino acid transporter 3;Note=Similar to amino acid transport protein.;Transcript_evidence=AK061649 (DDBJ%2C Best hit);ORF_evidence=NP_001149493.1 (RefSeq);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=001-036-C02;Oryzabase=18517;Expression=AK061649;TENOR=Os02t0670900-05;KEGG=Os02t0670900-05
Chr02	irgsp1_rep	five_prime_UTR	27245220	27245221	.	+	.	Parent=Os02t0670900-05
Chr02	irgsp1_rep	CDS	27245222	27246337	.	+	0	Parent=Os02t0670900-05
Chr02	irgsp1_rep	three_prime_UTR	27246338	27246916	.	+	.	Parent=Os02t0670900-05
Chr02	irgsp1_rep	mRNA	27248839	27250065	.	+	.	ID=Os02t0671100-01;Name=Os02t0671100-01;Locus_id=Os02g0671100;RAP-DB Gene Symbol Synonym(s)=MAIF1;RAP-DB Gene Name Synonym(s)=miRNAs regulated and abiotic stress induced F-box gene 1;Oryzabase Gene Symbol Synonym(s)=MAIF1%2C OsFbox104%2C Os_F0528;Oryzabase Gene Name Synonym(s)=miRNAs regulated and abiotic stress induced F-box gene 1%2C F-box protein 104;Note=F-box domain protein%2C Regulation of root growth%2C Negative role in response to abiotic stress;Transcript_evidence=AK100120,AK109758;ORF_evidence=Q6ESP4;GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box-like domain superfamily (IPR036047),F-box domain (IPR001810),Domain unknown function DUF295 (IPR005174);NIAS_FLcDNA=J023007K16,002-146-G06;Manual Curation=November 2%2C 2020;Literature_PMID=21059694;Oryzabase=11066;Expression=AK100120;TENOR=Os02t0671100-01;KEGG=Os02t0671100-01;Subcellular location=plasma membrane (GO:0005886), nucleus (GO:0005634)
Chr02	irgsp1_rep	five_prime_UTR	27248839	27248867	.	+	.	Parent=Os02t0671100-01
Chr02	irgsp1_rep	CDS	27248868	27250001	.	+	0	Parent=Os02t0671100-01
Chr02	irgsp1_rep	three_prime_UTR	27250002	27250065	.	+	.	Parent=Os02t0671100-01
Chr02	irgsp1_rep	mRNA	27262061	27263495	.	+	.	ID=Os02t0671200-01;Name=Os02t0671200-01;Locus_id=Os02g0671200;Oryzabase Gene Symbol Synonym(s)=Os_F0676;Note=Protein of unknown function DUF295 domain containing protein.;Transcript_evidence=AK288099 (DDBJ%2C Best hit);ORF_evidence=NP_001047699.2 (RefSeq);InterPro=Protein of unknown function DUF295 (IPR005174);NIAS_FLcDNA=J075194C10;Oryzabase=17484;TENOR=Os02t0671200-01;KEGG=Os02t0671200-01
Chr02	irgsp1_rep	five_prime_UTR	27262061	27262062	.	+	.	Parent=Os02t0671200-01
Chr02	irgsp1_rep	CDS	27262063	27263175	.	+	0	Parent=Os02t0671200-01
Chr02	irgsp1_rep	three_prime_UTR	27263176	27263495	.	+	.	Parent=Os02t0671200-01
Chr02	irgsp1_rep	mRNA	27266202	27269207	.	-	.	ID=Os02t0671300-01;Name=Os02t0671300-01;Locus_id=Os02g0671300;Oryzabase Gene Symbol Synonym(s)=OsbHLH076;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 076;Note=Basic helix-loop-helix dimerisation region bHLH domain containing protein.;Transcript_evidence=AK107063 (DDBJ%2C Best hit);ORF_evidence=A2X866 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=002-121-E03;Oryzabase=15363;Expression=AK107063;TENOR=Os02t0671300-01;KEGG=Os02t0671300-01
Chr02	irgsp1_rep	five_prime_UTR	27269173	27269207	.	-	.	Parent=Os02t0671300-01
Chr02	irgsp1_rep	CDS	27268820	27269172	.	-	0	Parent=Os02t0671300-01
Chr02	irgsp1_rep	CDS	27268070	27268724	.	-	1	Parent=Os02t0671300-01
Chr02	irgsp1_rep	CDS	27267732	27267857	.	-	0	Parent=Os02t0671300-01
Chr02	irgsp1_rep	CDS	27267550	27267621	.	-	0	Parent=Os02t0671300-01
Chr02	irgsp1_rep	CDS	27267365	27267430	.	-	0	Parent=Os02t0671300-01
Chr02	irgsp1_rep	CDS	27266589	27266633	.	-	0	Parent=Os02t0671300-01
Chr02	irgsp1_rep	CDS	27266288	27266464	.	-	0	Parent=Os02t0671300-01
Chr02	irgsp1_rep	three_prime_UTR	27266202	27266287	.	-	.	Parent=Os02t0671300-01
Chr02	irgsp1_rep	mRNA	27273361	27279579	.	-	.	ID=Os02t0671400-01;Name=Os02t0671400-01;Locus_id=Os02g0671400;Note=Hypothetical gene.;Transcript_evidence=AK103866 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033149G15;Expression=AK103866;TENOR=Os02t0671400-01;KEGG=Os02t0671400-01
Chr02	irgsp1_rep	five_prime_UTR	27279324	27279579	.	-	.	Parent=Os02t0671400-01
Chr02	irgsp1_rep	five_prime_UTR	27277795	27277851	.	-	.	Parent=Os02t0671400-01
Chr02	irgsp1_rep	five_prime_UTR	27276185	27277201	.	-	.	Parent=Os02t0671400-01
Chr02	irgsp1_rep	CDS	27275801	27276184	.	-	0	Parent=Os02t0671400-01
Chr02	irgsp1_rep	three_prime_UTR	27274621	27275800	.	-	.	Parent=Os02t0671400-01
Chr02	irgsp1_rep	three_prime_UTR	27274078	27274540	.	-	.	Parent=Os02t0671400-01
Chr02	irgsp1_rep	three_prime_UTR	27273837	27273988	.	-	.	Parent=Os02t0671400-01
Chr02	irgsp1_rep	three_prime_UTR	27273361	27273720	.	-	.	Parent=Os02t0671400-01
Chr02	irgsp1_rep	mRNA	27277542	27279473	.	-	.	ID=Os02t0671400-02;Name=Os02t0671400-02;Locus_id=Os02g0671400;Note=Conserved hypothetical protein.;Transcript_evidence=AK063575 (DDBJ%2C Best hit);ORF_evidence=B8AGE8 (UniProt);NIAS_FLcDNA=001-117-H01;Expression=AK063575;TENOR=Os02t0671400-02;KEGG=Os02t0671400-02
Chr02	irgsp1_rep	five_prime_UTR	27279324	27279473	.	-	.	Parent=Os02t0671400-02
Chr02	irgsp1_rep	five_prime_UTR	27277848	27277851	.	-	.	Parent=Os02t0671400-02
Chr02	irgsp1_rep	CDS	27277680	27277847	.	-	0	Parent=Os02t0671400-02
Chr02	irgsp1_rep	three_prime_UTR	27277542	27277679	.	-	.	Parent=Os02t0671400-02
Chr02	irgsp1_rep	mRNA	27273998	27274496	.	-	.	ID=Os02t0671400-03;Name=Os02t0671400-03;Locus_id=Os02g0671400;Note=Non-protein coding transcript.;Transcript_evidence=AK062642 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-105-D10;TENOR=Os02t0671400-03
Chr02	irgsp1_rep	exon	27273998	27274496	.	-	.	Parent=Os02t0671400-03
Chr02	irgsp1_rep	mRNA	27297098	27300008	.	-	.	ID=Os02t0671800-01;Name=Os02t0671800-01;Locus_id=Os02g0671800;Note=Integrase%2C catalytic core domain containing protein.;Transcript_evidence=AK107580 (DDBJ%2C Best hit);ORF_evidence=B9F1L1 (UniProt);GO=Biological Process: DNA integration (GO:0015074),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Integrase%2C catalytic core (IPR001584),Zinc finger%2C CCHC-type (IPR001878),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=002-130-E02;TENOR=Os02t0671800-01;KEGG=Os02t0671800-01
Chr02	irgsp1_rep	five_prime_UTR	27299855	27300008	.	-	.	Parent=Os02t0671800-01
Chr02	irgsp1_rep	CDS	27298136	27299854	.	-	0	Parent=Os02t0671800-01
Chr02	irgsp1_rep	three_prime_UTR	27297098	27298135	.	-	.	Parent=Os02t0671800-01
Chr02	irgsp1_rep	mRNA	27306666	27310941	.	+	.	ID=Os02t0671950-01;Name=Os02t0671950-01;Locus_id=Os02g0671950;Note=Hypothetical conserved gene.;Transcript_evidence=AK288501 (DDBJ%2C Best hit);ORF_evidence=A2X867 (UniProt);NIAS_FLcDNA=J090041C22;TENOR=Os02t0671950-01;KEGG=Os02t0671950-01
Chr02	irgsp1_rep	five_prime_UTR	27306666	27309617	.	+	.	Parent=Os02t0671950-01
Chr02	irgsp1_rep	CDS	27309618	27309749	.	+	0	Parent=Os02t0671950-01
Chr02	irgsp1_rep	three_prime_UTR	27309750	27310941	.	+	.	Parent=Os02t0671950-01
Chr02	irgsp1_rep	mRNA	27316157	27325651	.	+	.	ID=Os02t0672100-01;Name=Os02t0672100-01;Locus_id=Os02g0672100;RAP-DB Gene Symbol Synonym(s)=OsIDD4%2C SID1;RAP-DB Gene Name Synonym(s)=INDETERMINATE DOMAIN 4%2C Suppressor of rid1%2C indeterminate domain 4;CGSNL Gene Symbol=IDD4;CGSNL Gene Name=INDETERMINATE DOMAIN 4;Oryzabase Gene Symbol Synonym(s)=OsIDD4%2C SID1;Oryzabase Gene Name Synonym(s)=indeterminate domain 4%2C Suppressor of rid1;Note=C2H2-type zinc finger transcription factor%2C Promotion of flowering;Transcript_evidence=AK120603;ORF_evidence=Q6EU15;GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Zinc finger C2H2-type (IPR013087),Zinc finger%2C double-stranded RNA binding (IPR022755);NIAS_FLcDNA=J013149P10;Manual Curation=April 26%2C 2017;Literature_PMID=28234896;Oryzabase=21627;Expression=AK120603;TENOR=Os02t0672100-01;KEGG=Os02t0672100-01;Subcellular location=nucleus (GO:0005634)
Chr02	irgsp1_rep	five_prime_UTR	27316157	27316240	.	+	.	Parent=Os02t0672100-01
Chr02	irgsp1_rep	five_prime_UTR	27316690	27316824	.	+	.	Parent=Os02t0672100-01
Chr02	irgsp1_rep	CDS	27316825	27317050	.	+	0	Parent=Os02t0672100-01
Chr02	irgsp1_rep	CDS	27318385	27318784	.	+	2	Parent=Os02t0672100-01
Chr02	irgsp1_rep	CDS	27323863	27325084	.	+	1	Parent=Os02t0672100-01
Chr02	irgsp1_rep	three_prime_UTR	27325085	27325651	.	+	.	Parent=Os02t0672100-01
Chr02	irgsp1_rep	mRNA	27316851	27318680	.	-	.	ID=Os02t0672150-00;Name=Os02t0672150-00;Locus_id=Os02g0672150;Note=Hypothetical gene.;Transcript_evidence=BT086922 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0672150-00
Chr02	irgsp1_rep	CDS	27318382	27318680	.	-	0	Parent=Os02t0672150-00
Chr02	irgsp1_rep	CDS	27317044	27317047	.	-	1	Parent=Os02t0672150-00
Chr02	irgsp1_rep	three_prime_UTR	27316851	27317043	.	-	.	Parent=Os02t0672150-00
Chr02	irgsp1_rep	mRNA	27330175	27341732	.	-	.	ID=Os02t0672200-01;Name=Os02t0672200-01;Locus_id=Os02g0672200;CGSNL Gene Symbol=AGO1A;CGSNL Gene Name=ARGONAUTE 1A;Oryzabase Gene Symbol Synonym(s)=OsAGO1a%2C AGO1a%2C AGO10%2C AGO1-1;Oryzabase Gene Name Synonym(s)=Protein argonaute 1A%2C Argonaute 10;Note=Similar to AGO1 homologous protein.;Transcript_evidence=AK111553 (DDBJ%2C Best hit);ORF_evidence=Q6EU14 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515);InterPro=Argonaute/Dicer protein%2C PAZ (IPR003100),Stem cell self-renewal protein Piwi (IPR003165),Ribonuclease H-like (IPR012337),Domain of unknown function DUF1785 (IPR014811),Argonaut%2C glycine-rich domain (IPR024357);NIAS_FLcDNA=J013050D21;Oryzabase=8268;Expression=AK111553;TENOR=Os02t0672200-01;KEGG=Os02t0672200-01
Chr02	irgsp1_rep	five_prime_UTR	27341544	27341732	.	-	.	Parent=Os02t0672200-01
Chr02	irgsp1_rep	CDS	27341504	27341543	.	-	0	Parent=Os02t0672200-01
Chr02	irgsp1_rep	CDS	27336154	27336833	.	-	2	Parent=Os02t0672200-01
Chr02	irgsp1_rep	CDS	27335836	27336056	.	-	0	Parent=Os02t0672200-01
Chr02	irgsp1_rep	CDS	27335613	27335762	.	-	1	Parent=Os02t0672200-01
Chr02	irgsp1_rep	CDS	27335399	27335532	.	-	1	Parent=Os02t0672200-01
Chr02	irgsp1_rep	CDS	27334674	27334783	.	-	2	Parent=Os02t0672200-01
Chr02	irgsp1_rep	CDS	27334481	27334587	.	-	0	Parent=Os02t0672200-01
Chr02	irgsp1_rep	CDS	27334234	27334372	.	-	1	Parent=Os02t0672200-01
Chr02	irgsp1_rep	CDS	27333988	27334104	.	-	0	Parent=Os02t0672200-01
Chr02	irgsp1_rep	CDS	27333280	27333387	.	-	0	Parent=Os02t0672200-01
Chr02	irgsp1_rep	CDS	27333116	27333187	.	-	0	Parent=Os02t0672200-01
Chr02	irgsp1_rep	CDS	27332783	27332905	.	-	0	Parent=Os02t0672200-01
Chr02	irgsp1_rep	CDS	27332500	27332665	.	-	0	Parent=Os02t0672200-01
Chr02	irgsp1_rep	CDS	27332299	27332420	.	-	2	Parent=Os02t0672200-01
Chr02	irgsp1_rep	CDS	27332073	27332210	.	-	0	Parent=Os02t0672200-01
Chr02	irgsp1_rep	CDS	27331807	27331949	.	-	0	Parent=Os02t0672200-01
Chr02	irgsp1_rep	CDS	27331663	27331725	.	-	1	Parent=Os02t0672200-01
Chr02	irgsp1_rep	CDS	27331522	27331585	.	-	1	Parent=Os02t0672200-01
Chr02	irgsp1_rep	CDS	27331307	27331442	.	-	0	Parent=Os02t0672200-01
Chr02	irgsp1_rep	CDS	27331121	27331194	.	-	2	Parent=Os02t0672200-01
Chr02	irgsp1_rep	CDS	27330927	27331021	.	-	0	Parent=Os02t0672200-01
Chr02	irgsp1_rep	CDS	27330799	27330830	.	-	1	Parent=Os02t0672200-01
Chr02	irgsp1_rep	CDS	27330485	27330699	.	-	2	Parent=Os02t0672200-01
Chr02	irgsp1_rep	three_prime_UTR	27330175	27330484	.	-	.	Parent=Os02t0672200-01
Chr02	irgsp1_rep	mRNA	27330318	27334549	.	-	.	ID=Os02t0672200-02;Name=Os02t0672200-02;Locus_id=Os02g0672200;CGSNL Gene Symbol=AGO1A;CGSNL Gene Name=ARGONAUTE 1A;Oryzabase Gene Symbol Synonym(s)=OsAGO1a%2C AGO1a%2C AGO10%2C AGO1-1;Oryzabase Gene Name Synonym(s)=Protein argonaute 1A%2C Argonaute 10;Note=Similar to Protein argonaute 1A.;Transcript_evidence=AK112025 (DDBJ%2C Best hit);ORF_evidence=Q6EU14 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515);InterPro=Argonaute/Dicer protein%2C PAZ (IPR003100),Stem cell self-renewal protein Piwi (IPR003165),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=001-036-C05;Oryzabase=8268;Expression=AK112025;TENOR=Os02t0672200-02;KEGG=Os02t0672200-02
Chr02	irgsp1_rep	five_prime_UTR	27334549	27334549	.	-	.	Parent=Os02t0672200-02
Chr02	irgsp1_rep	CDS	27334481	27334548	.	-	0	Parent=Os02t0672200-02
Chr02	irgsp1_rep	CDS	27334234	27334372	.	-	1	Parent=Os02t0672200-02
Chr02	irgsp1_rep	CDS	27333988	27334104	.	-	0	Parent=Os02t0672200-02
Chr02	irgsp1_rep	CDS	27333280	27333387	.	-	0	Parent=Os02t0672200-02
Chr02	irgsp1_rep	CDS	27333116	27333187	.	-	0	Parent=Os02t0672200-02
Chr02	irgsp1_rep	CDS	27332783	27332905	.	-	0	Parent=Os02t0672200-02
Chr02	irgsp1_rep	CDS	27332500	27332665	.	-	0	Parent=Os02t0672200-02
Chr02	irgsp1_rep	CDS	27332299	27332420	.	-	2	Parent=Os02t0672200-02
Chr02	irgsp1_rep	CDS	27332073	27332210	.	-	0	Parent=Os02t0672200-02
Chr02	irgsp1_rep	CDS	27331807	27331949	.	-	0	Parent=Os02t0672200-02
Chr02	irgsp1_rep	CDS	27331663	27331725	.	-	1	Parent=Os02t0672200-02
Chr02	irgsp1_rep	CDS	27331522	27331585	.	-	1	Parent=Os02t0672200-02
Chr02	irgsp1_rep	CDS	27331307	27331442	.	-	0	Parent=Os02t0672200-02
Chr02	irgsp1_rep	CDS	27331121	27331194	.	-	2	Parent=Os02t0672200-02
Chr02	irgsp1_rep	CDS	27330927	27331021	.	-	0	Parent=Os02t0672200-02
Chr02	irgsp1_rep	CDS	27330799	27330830	.	-	1	Parent=Os02t0672200-02
Chr02	irgsp1_rep	CDS	27330485	27330699	.	-	2	Parent=Os02t0672200-02
Chr02	irgsp1_rep	three_prime_UTR	27330318	27330484	.	-	.	Parent=Os02t0672200-02
Chr02	irgsp1_rep	mRNA	27330484	27331882	.	+	.	ID=Os02t0672250-00;Name=Os02t0672250-00;Locus_id=Os02g0672250;Note=Hypothetical gene.;Transcript_evidence=BT016774 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0672250-00;KEGG=Os02t0672250-00
Chr02	irgsp1_rep	five_prime_UTR	27330484	27330666	.	+	.	Parent=Os02t0672250-00
Chr02	irgsp1_rep	CDS	27330667	27330719	.	+	0	Parent=Os02t0672250-00
Chr02	irgsp1_rep	CDS	27330919	27331016	.	+	1	Parent=Os02t0672250-00
Chr02	irgsp1_rep	CDS	27331116	27331180	.	+	2	Parent=Os02t0672250-00
Chr02	irgsp1_rep	three_prime_UTR	27331181	27331190	.	+	.	Parent=Os02t0672250-00
Chr02	irgsp1_rep	three_prime_UTR	27331295	27331463	.	+	.	Parent=Os02t0672250-00
Chr02	irgsp1_rep	three_prime_UTR	27331621	27331724	.	+	.	Parent=Os02t0672250-00
Chr02	irgsp1_rep	three_prime_UTR	27331806	27331882	.	+	.	Parent=Os02t0672250-00
Chr02	irgsp1_rep	mRNA	27352171	27357013	.	-	.	ID=Os02t0672400-01;Name=Os02t0672400-01;Locus_id=Os02g0672400;Note=Sugar transporter%2C conserved site domain containing protein.;Transcript_evidence=AK064365 (DDBJ%2C Best hit);ORF_evidence=B8AGF1 (UniProt);NIAS_FLcDNA=002-108-C02;TENOR=Os02t0672400-01
Chr02	irgsp1_rep	five_prime_UTR	27356953	27357013	.	-	.	Parent=Os02t0672400-01
Chr02	irgsp1_rep	CDS	27356712	27356952	.	-	0	Parent=Os02t0672400-01
Chr02	irgsp1_rep	CDS	27355535	27355581	.	-	2	Parent=Os02t0672400-01
Chr02	irgsp1_rep	CDS	27355139	27355295	.	-	0	Parent=Os02t0672400-01
Chr02	irgsp1_rep	CDS	27354817	27355012	.	-	2	Parent=Os02t0672400-01
Chr02	irgsp1_rep	CDS	27354105	27354231	.	-	1	Parent=Os02t0672400-01
Chr02	irgsp1_rep	CDS	27353525	27353701	.	-	0	Parent=Os02t0672400-01
Chr02	irgsp1_rep	CDS	27352555	27352710	.	-	0	Parent=Os02t0672400-01
Chr02	irgsp1_rep	three_prime_UTR	27352171	27352554	.	-	.	Parent=Os02t0672400-01
Chr02	irgsp1_rep	mRNA	27352173	27356964	.	-	.	ID=Os02t0672400-02;Name=Os02t0672400-02;Locus_id=Os02g0672400;Note=Sugar transporter%2C conserved site domain containing protein.;Transcript_evidence=AK101845 (DDBJ%2C Best hit);ORF_evidence=B8AGF1 (UniProt);NIAS_FLcDNA=J033069I15;TENOR=Os02t0672400-02
Chr02	irgsp1_rep	five_prime_UTR	27356953	27356964	.	-	.	Parent=Os02t0672400-02
Chr02	irgsp1_rep	CDS	27356712	27356952	.	-	0	Parent=Os02t0672400-02
Chr02	irgsp1_rep	CDS	27355535	27355581	.	-	2	Parent=Os02t0672400-02
Chr02	irgsp1_rep	CDS	27355139	27355295	.	-	0	Parent=Os02t0672400-02
Chr02	irgsp1_rep	CDS	27354817	27355012	.	-	2	Parent=Os02t0672400-02
Chr02	irgsp1_rep	CDS	27354105	27354231	.	-	1	Parent=Os02t0672400-02
Chr02	irgsp1_rep	CDS	27353525	27353701	.	-	0	Parent=Os02t0672400-02
Chr02	irgsp1_rep	CDS	27352555	27352710	.	-	0	Parent=Os02t0672400-02
Chr02	irgsp1_rep	three_prime_UTR	27352173	27352554	.	-	.	Parent=Os02t0672400-02
Chr02	irgsp1_rep	mRNA	27357591	27359660	.	-	.	ID=Os02t0672500-01;Name=Os02t0672500-01;Locus_id=Os02g0672500;Note=Similar to Mitochondrial import inner membrane translocase subunit tim23.;Transcript_evidence=AK110845 (DDBJ%2C Best hit),AK109266 (DDBJ%2C Best hit);ORF_evidence=B6T238 (UniProt);InterPro=Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 (IPR003397);NIAS_FLcDNA=002-172-B11,002-185-B07;TENOR=Os02t0672500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	27359659	27359660	.	-	.	Parent=Os02t0672500-01
Chr02	irgsp1_rep	CDS	27358987	27359658	.	-	0	Parent=Os02t0672500-01
Chr02	irgsp1_rep	three_prime_UTR	27357591	27358986	.	-	.	Parent=Os02t0672500-01
Chr02	irgsp1_rep	mRNA	27360447	27365739	.	+	.	ID=Os02t0672600-01;Name=Os02t0672600-01;Locus_id=Os02g0672600;RAP-DB Gene Symbol Synonym(s)=OsMTA2;CGSNL Gene Symbol=MTA2;CGSNL Gene Name=MRNA ADENOSINE METHYLASE 2;Oryzabase Gene Symbol Synonym(s)=OsMTA2;Oryzabase Gene Name Synonym(s)=mRNA adenosine methylase 2;Note=Subunit of RNA N6-methyladenosine methyltransferase%2C Regulation of embryo development;Transcript_evidence=AK070286,AK101174;ORF_evidence=Q6EU10;InterPro=S-adenosyl-L-methionine-dependent methyltransferase (IPR029063),MT-A70-like (IPR007757);NIAS_FLcDNA=J023047K24,J033028P13;Manual Curation=July 18%2C 2019;Literature_PMID=31116744;Oryzabase=23092;TENOR=Os02t0672600-01
Chr02	irgsp1_rep	five_prime_UTR	27360447	27360500	.	+	.	Parent=Os02t0672600-01
Chr02	irgsp1_rep	CDS	27360501	27361601	.	+	0	Parent=Os02t0672600-01
Chr02	irgsp1_rep	CDS	27363434	27363532	.	+	0	Parent=Os02t0672600-01
Chr02	irgsp1_rep	CDS	27363860	27363943	.	+	0	Parent=Os02t0672600-01
Chr02	irgsp1_rep	CDS	27364026	27364375	.	+	0	Parent=Os02t0672600-01
Chr02	irgsp1_rep	CDS	27364697	27364913	.	+	1	Parent=Os02t0672600-01
Chr02	irgsp1_rep	CDS	27365086	27365165	.	+	0	Parent=Os02t0672600-01
Chr02	irgsp1_rep	CDS	27365267	27365456	.	+	1	Parent=Os02t0672600-01
Chr02	irgsp1_rep	three_prime_UTR	27365457	27365739	.	+	.	Parent=Os02t0672600-01
Chr02	irgsp1_rep	mRNA	27369142	27371727	.	+	.	ID=Os02t0672700-01;Name=Os02t0672700-01;Locus_id=Os02g0672700;Note=DNA-directed RNA polymerase%2C M/15 kDa subunit domain containing protein.;Transcript_evidence=AK059611 (DDBJ%2C Best hit),AK099179 (DDBJ%2C Best hit);ORF_evidence=D5AAK0 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=WW/Rsp5/WWP (IPR001202),Zinc finger%2C TFIIS-type (IPR001222),DNA-directed RNA polymerase%2C subunit C11/M/9 (IPR012164);NIAS_FLcDNA=001-030-F08,J023098L23;TENOR=Os02t0672700-01
Chr02	irgsp1_rep	five_prime_UTR	27369142	27369459	.	+	.	Parent=Os02t0672700-01
Chr02	irgsp1_rep	five_prime_UTR	27369997	27370054	.	+	.	Parent=Os02t0672700-01
Chr02	irgsp1_rep	CDS	27370055	27370166	.	+	0	Parent=Os02t0672700-01
Chr02	irgsp1_rep	CDS	27370276	27370365	.	+	2	Parent=Os02t0672700-01
Chr02	irgsp1_rep	CDS	27371474	27371604	.	+	2	Parent=Os02t0672700-01
Chr02	irgsp1_rep	three_prime_UTR	27371605	27371727	.	+	.	Parent=Os02t0672700-01
Chr02	irgsp1_rep	mRNA	27372060	27376761	.	-	.	ID=Os02t0672800-01;Name=Os02t0672800-01;Locus_id=Os02g0672800;CGSNL Gene Symbol=WNK4;CGSNL Gene Name=WITH NO LYSINE KINASE 4;Oryzabase Gene Symbol Synonym(s)=OsWNK4;Oryzabase Gene Name Synonym(s)=With No Lysine kinase 4%2C WNK protein kinase 4%2C WNK kinase 4;Note=Similar to Protein kinase.;Transcript_evidence=AK073845 (DDBJ%2C Best hit);ORF_evidence=NP_001152638.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033067P07;Oryzabase=20439;Expression=AK073845;TENOR=Os02t0672800-01;KEGG=Os02t0672800-01
Chr02	irgsp1_rep	five_prime_UTR	27376201	27376761	.	-	.	Parent=Os02t0672800-01
Chr02	irgsp1_rep	CDS	27376123	27376200	.	-	0	Parent=Os02t0672800-01
Chr02	irgsp1_rep	CDS	27375738	27375775	.	-	0	Parent=Os02t0672800-01
Chr02	irgsp1_rep	CDS	27374566	27374793	.	-	1	Parent=Os02t0672800-01
Chr02	irgsp1_rep	CDS	27374262	27374482	.	-	1	Parent=Os02t0672800-01
Chr02	irgsp1_rep	CDS	27373549	27373706	.	-	2	Parent=Os02t0672800-01
Chr02	irgsp1_rep	CDS	27373087	27373477	.	-	0	Parent=Os02t0672800-01
Chr02	irgsp1_rep	CDS	27372290	27373014	.	-	2	Parent=Os02t0672800-01
Chr02	irgsp1_rep	three_prime_UTR	27372060	27372289	.	-	.	Parent=Os02t0672800-01
Chr02	irgsp1_rep	mRNA	27386926	27388940	.	+	.	ID=Os02t0673000-01;Name=Os02t0673000-01;Locus_id=Os02g0673000;Note=Uncharacterised protein family UPF0005 domain containing protein.;Transcript_evidence=AK108650 (DDBJ%2C Best hit);ORF_evidence=B6UQE3 (UniProt);GO=Biological Process: response to aluminum ion (GO:0010044);InterPro=Malate transporter%2C aliminium toerance (IPR020966);NIAS_FLcDNA=002-148-C05;Expression=AK108650;TENOR=Os02t0673000-01;KEGG=Os02t0673000-01
Chr02	irgsp1_rep	five_prime_UTR	27386926	27387279	.	+	.	Parent=Os02t0673000-01
Chr02	irgsp1_rep	five_prime_UTR	27387800	27387802	.	+	.	Parent=Os02t0673000-01
Chr02	irgsp1_rep	CDS	27387803	27388483	.	+	0	Parent=Os02t0673000-01
Chr02	irgsp1_rep	three_prime_UTR	27388484	27388940	.	+	.	Parent=Os02t0673000-01
Chr02	irgsp1_rep	mRNA	27391814	27394188	.	-	.	ID=Os02t0673100-01;Name=Os02t0673100-01;Locus_id=Os02g0673100;RAP-DB Gene Symbol Synonym(s)=OsALMT7;RAP-DB Gene Name Synonym(s)=aluminum-activated malate transporter 7;CGSNL Gene Symbol=PAAB1-1;CGSNL Gene Name=PANICLE APICAL ABORTION 1-1;Oryzabase Gene Symbol Synonym(s)=OsALMT7%2C ALMT7;Oryzabase Gene Name Synonym(s)=Aluminum-activated malate transporter 7%2C panicle apical abortion1-1;Note=Aluminum-activated malate transporter%2C Maintenance of panicle size and grain yield;Transcript_evidence=AK108963;ORF_evidence=Q6EPG5;GO=Biological Process: malate transport (GO:0015743);InterPro=Aluminum-activated malate transporter (IPR020966);NIAS_FLcDNA=002-153-D05;Manual Curation=May 22%2C 2018;Literature_PMID=29610210;Oryzabase=22156;TENOR=Os02t0673100-01;Subcellular location=plasma membrane (GO:0005886)
Chr02	irgsp1_rep	five_prime_UTR	27393891	27394188	.	-	.	Parent=Os02t0673100-01
Chr02	irgsp1_rep	CDS	27393542	27393890	.	-	0	Parent=Os02t0673100-01
Chr02	irgsp1_rep	CDS	27393300	27393440	.	-	2	Parent=Os02t0673100-01
Chr02	irgsp1_rep	CDS	27392166	27393142	.	-	2	Parent=Os02t0673100-01
Chr02	irgsp1_rep	three_prime_UTR	27391814	27392165	.	-	.	Parent=Os02t0673100-01
Chr02	irgsp1_rep	mRNA	27390847	27393992	.	-	.	ID=Os02t0673100-02;Name=Os02t0673100-02;Locus_id=Os02g0673100;CGSNL Gene Symbol=PAAB1-1;CGSNL Gene Name=PANICLE APICAL ABORTION 1-1;Oryzabase Gene Symbol Synonym(s)=OsALMT7%2C ALMT7;Oryzabase Gene Name Synonym(s)=Aluminum-activated malate transporter 7%2C panicle apical abortion1-1;Note=Similar to ALMT3.;Transcript_evidence=AK111202 (DDBJ%2C Best hit);ORF_evidence=A5YBP9 (UniProt);GO=Biological Process: response to aluminum ion (GO:0010044);InterPro=Malate transporter%2C aliminium toerance (IPR020966);NIAS_FLcDNA=002-178-E04;Manual Curation=May 22%2C 2018;Oryzabase=22156;TENOR=Os02t0673100-02
Chr02	irgsp1_rep	five_prime_UTR	27393891	27393992	.	-	.	Parent=Os02t0673100-02
Chr02	irgsp1_rep	CDS	27393542	27393890	.	-	0	Parent=Os02t0673100-02
Chr02	irgsp1_rep	CDS	27393300	27393440	.	-	2	Parent=Os02t0673100-02
Chr02	irgsp1_rep	CDS	27392166	27393142	.	-	2	Parent=Os02t0673100-02
Chr02	irgsp1_rep	three_prime_UTR	27390847	27392165	.	-	.	Parent=Os02t0673100-02
Chr02	irgsp1_rep	mRNA	27392435	27393145	.	+	.	ID=Os02t0673301-00;Name=Os02t0673301-00;Locus_id=Os02g0673301;Note=Hypothetical gene.;Transcript_evidence=AK335180 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0673301-00
Chr02	irgsp1_rep	five_prime_UTR	27392435	27392435	.	+	.	Parent=Os02t0673301-00
Chr02	irgsp1_rep	CDS	27392436	27393145	.	+	0	Parent=Os02t0673301-00
Chr02	irgsp1_rep	mRNA	27416559	27421828	.	+	.	ID=Os02t0673500-01;Name=Os02t0673500-01;Locus_id=Os02g0673500;Note=Basic helix-loop-helix dimerisation region bHLH domain containing protein.;Transcript_evidence=AK073183 (DDBJ%2C Best hit);ORF_evidence=B8AGF4 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J033009O22;Expression=AK073183;TENOR=Os02t0673500-01;KEGG=Os02t0673500-01
Chr02	irgsp1_rep	five_prime_UTR	27416559	27416672	.	+	.	Parent=Os02t0673500-01
Chr02	irgsp1_rep	CDS	27416673	27416761	.	+	0	Parent=Os02t0673500-01
Chr02	irgsp1_rep	CDS	27417855	27417944	.	+	1	Parent=Os02t0673500-01
Chr02	irgsp1_rep	CDS	27418271	27418373	.	+	1	Parent=Os02t0673500-01
Chr02	irgsp1_rep	CDS	27418646	27418687	.	+	0	Parent=Os02t0673500-01
Chr02	irgsp1_rep	CDS	27418825	27418884	.	+	0	Parent=Os02t0673500-01
Chr02	irgsp1_rep	CDS	27419252	27420655	.	+	0	Parent=Os02t0673500-01
Chr02	irgsp1_rep	CDS	27420734	27420835	.	+	0	Parent=Os02t0673500-01
Chr02	irgsp1_rep	CDS	27420931	27421116	.	+	0	Parent=Os02t0673500-01
Chr02	irgsp1_rep	CDS	27421202	27421327	.	+	0	Parent=Os02t0673500-01
Chr02	irgsp1_rep	CDS	27421412	27421588	.	+	0	Parent=Os02t0673500-01
Chr02	irgsp1_rep	three_prime_UTR	27421589	27421828	.	+	.	Parent=Os02t0673500-01
Chr02	irgsp1_rep	mRNA	27422921	27427541	.	+	.	ID=Os02t0673600-01;Name=Os02t0673600-01;Locus_id=Os02g0673600;Note=ORMDL family protein.;Transcript_evidence=AK242994 (DDBJ%2C Best hit);ORF_evidence=B3TLM1 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=ORMDL (IPR007203);NIAS_FLcDNA=J090095G22;TENOR=Os02t0673600-01;KEGG=Os02t0673600-01
Chr02	irgsp1_rep	five_prime_UTR	27422921	27423167	.	+	.	Parent=Os02t0673600-01
Chr02	irgsp1_rep	CDS	27423168	27423353	.	+	0	Parent=Os02t0673600-01
Chr02	irgsp1_rep	CDS	27424426	27424574	.	+	0	Parent=Os02t0673600-01
Chr02	irgsp1_rep	CDS	27427106	27427244	.	+	1	Parent=Os02t0673600-01
Chr02	irgsp1_rep	three_prime_UTR	27427245	27427541	.	+	.	Parent=Os02t0673600-01
Chr02	irgsp1_rep	mRNA	27435303	27438545	.	-	.	ID=Os02t0673700-01;Name=Os02t0673700-01;Locus_id=Os02g0673700;CGSNL Gene Symbol=RDD1;CGSNL Gene Name=RICE DOF DAILY FLUCTUATIONS 1;Oryzabase Gene Symbol Synonym(s)=OsDof2%2C OsDof9%2C Dof9%2C OsDof-9%2C DLN64%2C OsDLN64;Oryzabase Gene Name Synonym(s)=Dof zinc factor 9%2C Dof transcription factor 9%2C DLN repressor 64%2C DLN motif protein 64;Note=Similar to OSIGBa0103M18.3 protein.;Transcript_evidence=AK287447 (DDBJ%2C Best hit);ORF_evidence=Q01K70 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C Dof-type (IPR003851);NIAS_FLcDNA=J043016O04;Oryzabase=8790;TENOR=Os02t0673700-01;KEGG=Os02t0673700-01
Chr02	irgsp1_rep	five_prime_UTR	27438397	27438545	.	-	.	Parent=Os02t0673700-01
Chr02	irgsp1_rep	CDS	27438373	27438396	.	-	0	Parent=Os02t0673700-01
Chr02	irgsp1_rep	CDS	27436221	27437342	.	-	0	Parent=Os02t0673700-01
Chr02	irgsp1_rep	three_prime_UTR	27435303	27436220	.	-	.	Parent=Os02t0673700-01
Chr02	irgsp1_rep	mRNA	27435719	27437461	.	-	.	ID=Os02t0673700-02;Name=Os02t0673700-02;Locus_id=Os02g0673700;CGSNL Gene Symbol=RDD1;CGSNL Gene Name=RICE DOF DAILY FLUCTUATIONS 1;Oryzabase Gene Symbol Synonym(s)=OsDof2%2C OsDof9%2C Dof9%2C OsDof-9%2C DLN64%2C OsDLN64;Oryzabase Gene Name Synonym(s)=Dof zinc factor 9%2C Dof transcription factor 9%2C DLN repressor 64%2C DLN motif protein 64;Note=Similar to OSIGBa0103M18.3 protein.;Transcript_evidence=AK120810 (DDBJ%2C Best hit);ORF_evidence=Q01K70 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C Dof-type (IPR003851);NIAS_FLcDNA=J023014F11;Oryzabase=8790;Expression=AK120810;TENOR=Os02t0673700-02;KEGG=Os02t0673700-02
Chr02	irgsp1_rep	five_prime_UTR	27437322	27437461	.	-	.	Parent=Os02t0673700-02
Chr02	irgsp1_rep	CDS	27436221	27437321	.	-	0	Parent=Os02t0673700-02
Chr02	irgsp1_rep	three_prime_UTR	27435719	27436220	.	-	.	Parent=Os02t0673700-02
Chr02	irgsp1_rep	mRNA	27438337	27438962	.	+	.	ID=Os02t0674050-00;Name=Os02t0674050-00;Locus_id=Os02g0674050;Note=Non-protein coding transcript.;Transcript_evidence=EU970724 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0674050-00
Chr02	irgsp1_rep	exon	27438337	27438962	.	+	.	Parent=Os02t0674050-00
Chr02	irgsp1_rep	mRNA	27473960	27475760	.	-	.	ID=Os02t0674233-00;Name=Os02t0674233-00;Locus_id=Os02g0674233;Note=Hypothetical conserved gene.;Transcript_evidence=CT835293 (DDBJ%2C Best hit);ORF_evidence=Q6EPF4 (UniProt);TENOR=Os02t0674233-00;KEGG=Os02t0674233-00
Chr02	irgsp1_rep	five_prime_UTR	27475673	27475760	.	-	.	Parent=Os02t0674233-00
Chr02	irgsp1_rep	CDS	27475358	27475672	.	-	0	Parent=Os02t0674233-00
Chr02	irgsp1_rep	three_prime_UTR	27475325	27475357	.	-	.	Parent=Os02t0674233-00
Chr02	irgsp1_rep	three_prime_UTR	27474049	27474229	.	-	.	Parent=Os02t0674233-00
Chr02	irgsp1_rep	three_prime_UTR	27473960	27474041	.	-	.	Parent=Os02t0674233-00
Chr02	irgsp1_rep	mRNA	27469581	27475332	.	+	.	ID=Os02t0674400-01;Name=Os02t0674400-01;Locus_id=Os02g0674400;Note=Conserved hypothetical protein.;Transcript_evidence=AK289092 (DDBJ%2C Best hit);ORF_evidence=Q8S758 (UniProt);NIAS_FLcDNA=J090096B09;TENOR=Os02t0674400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	27469581	27469581	.	+	.	Parent=Os02t0674400-01
Chr02	irgsp1_rep	CDS	27469582	27469686	.	+	0	Parent=Os02t0674400-01
Chr02	irgsp1_rep	three_prime_UTR	27469687	27475332	.	+	.	Parent=Os02t0674400-01
Chr02	irgsp1_rep	mRNA	27480264	27484556	.	-	.	ID=Os02t0674700-00;Name=Os02t0674700-00;Locus_id=Os02g0674700;Note=Similar to protein binding protein.;Transcript_evidence=tplb0022j18 (Wheat FLcDNA);ORF_evidence=NP_001147541.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);TENOR=Os02t0674700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	27484488	27484556	.	-	.	Parent=Os02t0674700-00
Chr02	irgsp1_rep	CDS	27483943	27484487	.	-	0	Parent=Os02t0674700-00
Chr02	irgsp1_rep	CDS	27482559	27482678	.	-	1	Parent=Os02t0674700-00
Chr02	irgsp1_rep	CDS	27482335	27482467	.	-	1	Parent=Os02t0674700-00
Chr02	irgsp1_rep	CDS	27481451	27481615	.	-	0	Parent=Os02t0674700-00
Chr02	irgsp1_rep	CDS	27480453	27480629	.	-	0	Parent=Os02t0674700-00
Chr02	irgsp1_rep	three_prime_UTR	27480264	27480452	.	-	.	Parent=Os02t0674700-00
Chr02	irgsp1_rep	mRNA	27484002	27484562	.	+	.	ID=Os02t0674750-00;Name=Os02t0674750-00;Locus_id=Os02g0674750;Note=Hypothetical conserved gene.;Transcript_evidence=EU941385 (DDBJ);ORF_evidence=B9F1M0 (UniProt);TENOR=Os02t0674750-00;KEGG=Os02t0674750-00
Chr02	irgsp1_rep	CDS	27484002	27484562	.	+	0	Parent=Os02t0674750-00
Chr02	irgsp1_rep	mRNA	27487866	27494913	.	-	.	ID=Os02t0674800-01;Name=Os02t0674800-01;Locus_id=Os02g0674800;RAP-DB Gene Symbol Synonym(s)=Roc5;RAP-DB Gene Name Synonym(s)=Rice outermost cell-specific gene5;CGSNL Gene Symbol=ROC5;CGSNL Gene Name=RICE OUTMOST CELL-SPECIFIC GENE 5;Oryzabase Gene Symbol Synonym(s)=Roc5(t)%2C Roc5%2C GL2-5%2C OsROC5;Oryzabase Gene Name Synonym(s)=Rice outmost cell -specific gene 5(t)%2C Rice outermost cell-specific gene-5%2C Homeobox-leucine zipper protein ROC5%2C Homeodomain transcription factor ROC5%2C HD-ZIP protein ROC5%2C Protein RICE OUTERMOST CELL-SPECIFIC 5%2C GLABRA 2-like homeobox protein 5%2C outcurved leaf1%2C Rice ooutmost cell-specific gene5;Note=Homeodomain leucine zipper class IV transcriptional factor %2C Ortholog of Arabidopsis GLABRA2%2C Modulation of leaf rolling;Transcript_evidence=AK111544;ORF_evidence=Q6EPF0;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: lipid binding (GO:0008289),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox-like domain superfamily (IPR009057),Homeobox domain (IPR001356),START domain (IPR002913),Homeobox%2C conserved site (IPR017970);NIAS_FLcDNA=J013045A10;Manual Curation=September 7%2C 2020;Literature_PMID=21596949;Oryzabase=2866;Expression=AK111544;TENOR=Os02t0674800-01;KEGG=Os02t0674800-01;Subcellular location=nucleus (GO:0005634)
Chr02	irgsp1_rep	five_prime_UTR	27494460	27494913	.	-	.	Parent=Os02t0674800-01
Chr02	irgsp1_rep	CDS	27494361	27494459	.	-	0	Parent=Os02t0674800-01
Chr02	irgsp1_rep	CDS	27494007	27494251	.	-	0	Parent=Os02t0674800-01
Chr02	irgsp1_rep	CDS	27493777	27493894	.	-	1	Parent=Os02t0674800-01
Chr02	irgsp1_rep	CDS	27492922	27493638	.	-	0	Parent=Os02t0674800-01
Chr02	irgsp1_rep	CDS	27492722	27492823	.	-	0	Parent=Os02t0674800-01
Chr02	irgsp1_rep	CDS	27492385	27492612	.	-	0	Parent=Os02t0674800-01
Chr02	irgsp1_rep	CDS	27490548	27490725	.	-	0	Parent=Os02t0674800-01
Chr02	irgsp1_rep	CDS	27489946	27490319	.	-	2	Parent=Os02t0674800-01
Chr02	irgsp1_rep	CDS	27488432	27488785	.	-	0	Parent=Os02t0674800-01
Chr02	irgsp1_rep	three_prime_UTR	27487866	27488431	.	-	.	Parent=Os02t0674800-01
Chr02	irgsp1_rep	mRNA	27502723	27503659	.	-	.	ID=Os02t0675000-01;Name=Os02t0675000-01;Locus_id=Os02g0675000;Note=Hypothetical protein.;Transcript_evidence=AK109532 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-118-H05;Expression=AK109532;TENOR=Os02t0675000-01;KEGG=Os02t0675000-01
Chr02	irgsp1_rep	five_prime_UTR	27503308	27503659	.	-	.	Parent=Os02t0675000-01
Chr02	irgsp1_rep	CDS	27503005	27503307	.	-	0	Parent=Os02t0675000-01
Chr02	irgsp1_rep	three_prime_UTR	27502723	27503004	.	-	.	Parent=Os02t0675000-01
Chr02	irgsp1_rep	mRNA	27502963	27503867	.	+	.	ID=Os02t0675100-01;Name=Os02t0675100-01;Locus_id=Os02g0675100;Note=Conserved hypothetical protein.;Transcript_evidence=AK107953 (DDBJ%2C Best hit);ORF_evidence=B9FBX1 (UniProt);NIAS_FLcDNA=002-135-C01;Expression=AK107953;TENOR=Os02t0675100-01;KEGG=Os02t0675100-01
Chr02	irgsp1_rep	five_prime_UTR	27502963	27503158	.	+	.	Parent=Os02t0675100-01
Chr02	irgsp1_rep	CDS	27503159	27503719	.	+	0	Parent=Os02t0675100-01
Chr02	irgsp1_rep	three_prime_UTR	27503720	27503867	.	+	.	Parent=Os02t0675100-01
Chr02	irgsp1_rep	mRNA	27507087	27511190	.	-	.	ID=Os02t0675400-00;Name=Os02t0675400-00;Locus_id=Os02g0675400;Note=Similar to OSIGBa0111L12.2 protein.;Transcript_evidence=AK362424 (DDBJ);ORF_evidence=Q01J00 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os02t0675400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	27511092	27511190	.	-	.	Parent=Os02t0675400-00
Chr02	irgsp1_rep	CDS	27510880	27511091	.	-	0	Parent=Os02t0675400-00
Chr02	irgsp1_rep	CDS	27510460	27510784	.	-	1	Parent=Os02t0675400-00
Chr02	irgsp1_rep	CDS	27510198	27510347	.	-	0	Parent=Os02t0675400-00
Chr02	irgsp1_rep	CDS	27509699	27509950	.	-	0	Parent=Os02t0675400-00
Chr02	irgsp1_rep	CDS	27509508	27509603	.	-	0	Parent=Os02t0675400-00
Chr02	irgsp1_rep	CDS	27508809	27508887	.	-	0	Parent=Os02t0675400-00
Chr02	irgsp1_rep	CDS	27508587	27508693	.	-	2	Parent=Os02t0675400-00
Chr02	irgsp1_rep	CDS	27507434	27507564	.	-	0	Parent=Os02t0675400-00
Chr02	irgsp1_rep	CDS	27507229	27507319	.	-	1	Parent=Os02t0675400-00
Chr02	irgsp1_rep	three_prime_UTR	27507087	27507228	.	-	.	Parent=Os02t0675400-00
Chr02	irgsp1_rep	mRNA	27507434	27511040	.	+	.	ID=Os02t0675550-00;Name=Os02t0675550-00;Locus_id=Os02g0675550;Note=Hypothetical protein.;Transcript_evidence=tplb0036f19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0675550-00
Chr02	irgsp1_rep	five_prime_UTR	27507434	27507547	.	+	.	Parent=Os02t0675550-00
Chr02	irgsp1_rep	five_prime_UTR	27508571	27508699	.	+	.	Parent=Os02t0675550-00
Chr02	irgsp1_rep	five_prime_UTR	27509434	27509594	.	+	.	Parent=Os02t0675550-00
Chr02	irgsp1_rep	CDS	27509595	27509645	.	+	0	Parent=Os02t0675550-00
Chr02	irgsp1_rep	CDS	27509738	27509978	.	+	0	Parent=Os02t0675550-00
Chr02	irgsp1_rep	CDS	27510221	27510312	.	+	2	Parent=Os02t0675550-00
Chr02	irgsp1_rep	three_prime_UTR	27510313	27510350	.	+	.	Parent=Os02t0675550-00
Chr02	irgsp1_rep	three_prime_UTR	27510467	27510812	.	+	.	Parent=Os02t0675550-00
Chr02	irgsp1_rep	three_prime_UTR	27510904	27511040	.	+	.	Parent=Os02t0675550-00
Chr02	irgsp1_rep	mRNA	27531016	27534623	.	-	.	ID=Os02t0675700-01;Name=Os02t0675700-01;Locus_id=Os02g0675700;Note=Protein of unknown function DUF248%2C methyltransferase putative family protein.;Transcript_evidence=AK065315 (DDBJ%2C Best hit);ORF_evidence=A6MZN0 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Protein of unknown function DUF248%2C methyltransferase putative (IPR004159);NIAS_FLcDNA=J013002P05;Expression=AK065315;TENOR=Os02t0675700-01;KEGG=Os02t0675700-01
Chr02	irgsp1_rep	five_prime_UTR	27534486	27534623	.	-	.	Parent=Os02t0675700-01
Chr02	irgsp1_rep	CDS	27533739	27534485	.	-	0	Parent=Os02t0675700-01
Chr02	irgsp1_rep	CDS	27532644	27532854	.	-	0	Parent=Os02t0675700-01
Chr02	irgsp1_rep	CDS	27532259	27532547	.	-	2	Parent=Os02t0675700-01
Chr02	irgsp1_rep	CDS	27531789	27532181	.	-	1	Parent=Os02t0675700-01
Chr02	irgsp1_rep	CDS	27531532	27531609	.	-	1	Parent=Os02t0675700-01
Chr02	irgsp1_rep	CDS	27531225	27531447	.	-	1	Parent=Os02t0675700-01
Chr02	irgsp1_rep	three_prime_UTR	27531016	27531224	.	-	.	Parent=Os02t0675700-01
Chr02	irgsp1_rep	mRNA	27533734	27534507	.	+	.	ID=Os02t0675750-00;Name=Os02t0675750-00;Locus_id=Os02g0675750;Note=Hypothetical gene.;Transcript_evidence=EU963650 (DDBJ);ORF_evidence=GeneMark;TENOR=Os02t0675750-00;KEGG=Os02t0675750-00
Chr02	irgsp1_rep	five_prime_UTR	27533734	27533787	.	+	.	Parent=Os02t0675750-00
Chr02	irgsp1_rep	CDS	27533788	27534378	.	+	0	Parent=Os02t0675750-00
Chr02	irgsp1_rep	three_prime_UTR	27534379	27534507	.	+	.	Parent=Os02t0675750-00
Chr02	irgsp1_rep	mRNA	27548414	27551592	.	+	.	ID=Os02t0675800-01;Name=Os02t0675800-01;Locus_id=Os02g0675800;Oryzabase Gene Symbol Synonym(s)=OsFbox105%2C Os_F0549;Oryzabase Gene Name Synonym(s)=F-box protein 105;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK100726 (DDBJ%2C Best hit);ORF_evidence=Q01JM6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023117D20;Oryzabase=16897;Expression=AK100726;TENOR=Os02t0675800-01;KEGG=Os02t0675800-01
Chr02	irgsp1_rep	five_prime_UTR	27548414	27548992	.	+	.	Parent=Os02t0675800-01
Chr02	irgsp1_rep	CDS	27548993	27549337	.	+	0	Parent=Os02t0675800-01
Chr02	irgsp1_rep	CDS	27549673	27549791	.	+	0	Parent=Os02t0675800-01
Chr02	irgsp1_rep	CDS	27550802	27551231	.	+	1	Parent=Os02t0675800-01
Chr02	irgsp1_rep	three_prime_UTR	27551232	27551592	.	+	.	Parent=Os02t0675800-01
Chr02	irgsp1_rep	mRNA	27559285	27566940	.	+	.	ID=Os02t0676000-01;Name=Os02t0676000-01;Locus_id=Os02g0676000;Note=Membrane bound O-acyl transferase%2C MBOAT family protein.;Transcript_evidence=AK073916 (DDBJ%2C Best hit);ORF_evidence=XP_002892700.1 (RefSeq);InterPro=Membrane bound O-acyl transferase%2C MBOAT (IPR004299);NIAS_FLcDNA=J033071M20;Expression=AK073916;TENOR=Os02t0676000-01;KEGG=Os02t0676000-01
Chr02	irgsp1_rep	five_prime_UTR	27559285	27559400	.	+	.	Parent=Os02t0676000-01
Chr02	irgsp1_rep	CDS	27559401	27559702	.	+	0	Parent=Os02t0676000-01
Chr02	irgsp1_rep	CDS	27563365	27563420	.	+	1	Parent=Os02t0676000-01
Chr02	irgsp1_rep	CDS	27563902	27564122	.	+	2	Parent=Os02t0676000-01
Chr02	irgsp1_rep	CDS	27564198	27564594	.	+	0	Parent=Os02t0676000-01
Chr02	irgsp1_rep	CDS	27565152	27565237	.	+	2	Parent=Os02t0676000-01
Chr02	irgsp1_rep	CDS	27565736	27565799	.	+	0	Parent=Os02t0676000-01
Chr02	irgsp1_rep	CDS	27565902	27566014	.	+	2	Parent=Os02t0676000-01
Chr02	irgsp1_rep	CDS	27566544	27566684	.	+	0	Parent=Os02t0676000-01
Chr02	irgsp1_rep	three_prime_UTR	27566685	27566940	.	+	.	Parent=Os02t0676000-01
Chr02	irgsp1_rep	mRNA	27565161	27567041	.	+	.	ID=Os02t0676000-02;Name=Os02t0676000-02;Locus_id=Os02g0676000;Note=Similar to predicted protein.;Transcript_evidence=AK059030 (DDBJ%2C Best hit);ORF_evidence=XP_002892700.1 (RefSeq);InterPro=Membrane bound O-acyl transferase%2C MBOAT (IPR004299);NIAS_FLcDNA=001-021-C02;Expression=AK059030;TENOR=Os02t0676000-02;KEGG=Os02t0676000-02
Chr02	irgsp1_rep	five_prime_UTR	27565161	27565162	.	+	.	Parent=Os02t0676000-02
Chr02	irgsp1_rep	CDS	27565163	27565237	.	+	0	Parent=Os02t0676000-02
Chr02	irgsp1_rep	CDS	27565736	27565799	.	+	0	Parent=Os02t0676000-02
Chr02	irgsp1_rep	CDS	27565902	27566014	.	+	2	Parent=Os02t0676000-02
Chr02	irgsp1_rep	CDS	27566544	27566684	.	+	0	Parent=Os02t0676000-02
Chr02	irgsp1_rep	three_prime_UTR	27566685	27567041	.	+	.	Parent=Os02t0676000-02
Chr02	irgsp1_rep	mRNA	27591163	27592963	.	+	.	ID=Os02t0676400-00;Name=Os02t0676400-00;Locus_id=Os02g0676400;Note=Multi antimicrobial extrusion protein MatE family protein.;Transcript_evidence=BT083598 (DDBJ);ORF_evidence=Q01JM2 (UniProt);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);TENOR=Os02t0676400-00;KEGG=Os02t0676400-00
Chr02	irgsp1_rep	CDS	27591163	27592812	.	+	0	Parent=Os02t0676400-00
Chr02	irgsp1_rep	three_prime_UTR	27592813	27592963	.	+	.	Parent=Os02t0676400-00
Chr02	irgsp1_rep	mRNA	27594039	27601310	.	-	.	ID=Os02t0676450-01;Name=Os02t0676450-01;Locus_id=Os02g0676450;Note=Non-protein coding transcript.;Transcript_evidence=AK287818 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065182C10;TENOR=Os02t0676450-01
Chr02	irgsp1_rep	exon	27601158	27601310	.	-	.	Parent=Os02t0676450-01
Chr02	irgsp1_rep	exon	27598449	27598579	.	-	.	Parent=Os02t0676450-01
Chr02	irgsp1_rep	exon	27594386	27594440	.	-	.	Parent=Os02t0676450-01
Chr02	irgsp1_rep	exon	27594039	27594299	.	-	.	Parent=Os02t0676450-01
Chr02	irgsp1_rep	mRNA	27602322	27606779	.	+	.	ID=Os02t0676500-00;Name=Os02t0676500-00;Locus_id=Os02g0676500;Oryzabase Gene Symbol Synonym(s)=OsRFPH2-2;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPH2-2%2C RING-H2 protein 2;Note=Similar to OSIGBa0127A14.6 protein.;Transcript_evidence=CT835321 (DDBJ%2C Best hit);ORF_evidence=Q01JM1 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);Oryzabase=11763;TENOR=Os02t0676500-00;KEGG=Os02t0676500-00
Chr02	irgsp1_rep	five_prime_UTR	27602322	27602582	.	+	.	Parent=Os02t0676500-00
Chr02	irgsp1_rep	CDS	27602583	27602807	.	+	0	Parent=Os02t0676500-00
Chr02	irgsp1_rep	CDS	27604896	27604993	.	+	0	Parent=Os02t0676500-00
Chr02	irgsp1_rep	CDS	27606107	27606446	.	+	1	Parent=Os02t0676500-00
Chr02	irgsp1_rep	three_prime_UTR	27606447	27606779	.	+	.	Parent=Os02t0676500-00
Chr02	irgsp1_rep	mRNA	27621222	27622912	.	+	.	ID=Os02t0676800-01;Name=Os02t0676800-01;Locus_id=Os02g0676800;CGSNL Gene Symbol=ERF20;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 20;Oryzabase Gene Symbol Synonym(s)=OsERF#020%2C OsERF020%2C OsERF20%2C AP2/EREBP#126%2C AP2/EREBP126%2C OsDREB1G;Oryzabase Gene Name Synonym(s)=ethylene response factor 20%2C APETALA2/ethylene-responsive element binding protein 126;Note=Similar to Dehydration responsive element binding protein 1E (DREB1E protein).;Transcript_evidence=AK243146 (DDBJ%2C Best hit);ORF_evidence=Q01JM0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J100032D11;Oryzabase=10544;TENOR=Os02t0676800-01;KEGG=Os02t0676800-01
Chr02	irgsp1_rep	five_prime_UTR	27621222	27621487	.	+	.	Parent=Os02t0676800-01
Chr02	irgsp1_rep	CDS	27621488	27622273	.	+	0	Parent=Os02t0676800-01
Chr02	irgsp1_rep	three_prime_UTR	27622274	27622912	.	+	.	Parent=Os02t0676800-01
Chr02	irgsp1_rep	mRNA	27652935	27654206	.	+	.	ID=Os02t0677300-02;Name=Os02t0677300-02;Locus_id=Os02g0677300;CGSNL Gene Symbol=DREB1G;CGSNL Gene Name=DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1G;Oryzabase Gene Symbol Synonym(s)=OsDREB1G%2C OsERF025%2C OsERF#025%2C OsERF25%2C ERF25%2C AP2/EREBP#138%2C AP2/EREBP138%2C OsDREB1I;Oryzabase Gene Name Synonym(s)=Dehydration-responsive element-binding protein 1G%2C ethylene response factor 25%2C APETALA2/ethylene-responsive element binding protein 138;Note=Similar to CRT/DRE binding factor 1.;Transcript_evidence=AK106041 (DDBJ%2C Best hit),AK060550 (DDBJ%2C Best hit);ORF_evidence=Q6EP77 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=001-206-E01,001-021-H10;Oryzabase=9500;Expression=AK106041;TENOR=Os02t0677300-02;KEGG=Os02t0677300-02
Chr02	irgsp1_rep	five_prime_UTR	27652935	27652979	.	+	.	Parent=Os02t0677300-02
Chr02	irgsp1_rep	CDS	27652980	27653654	.	+	0	Parent=Os02t0677300-02
Chr02	irgsp1_rep	three_prime_UTR	27653655	27654206	.	+	.	Parent=Os02t0677300-02
Chr02	irgsp1_rep	mRNA	27658946	27660116	.	-	.	ID=Os02t0677600-01;Name=Os02t0677600-01;Locus_id=Os02g0677600;Note=Conserved hypothetical protein.;Transcript_evidence=AK068106 (DDBJ%2C Best hit);ORF_evidence=A2X8A0 (UniProt);NIAS_FLcDNA=J013132B11;Expression=AK068106;TENOR=Os02t0677600-01;KEGG=Os02t0677600-01
Chr02	irgsp1_rep	five_prime_UTR	27660011	27660116	.	-	.	Parent=Os02t0677600-01
Chr02	irgsp1_rep	CDS	27659516	27660010	.	-	0	Parent=Os02t0677600-01
Chr02	irgsp1_rep	CDS	27659078	27659353	.	-	0	Parent=Os02t0677600-01
Chr02	irgsp1_rep	three_prime_UTR	27658946	27659077	.	-	.	Parent=Os02t0677600-01
Chr02	irgsp1_rep	mRNA	27662418	27667350	.	+	.	ID=Os02t0677700-01;Name=Os02t0677700-01;Locus_id=Os02g0677700;CGSNL Gene Symbol=C3H17;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 17;Oryzabase Gene Symbol Synonym(s)=OsC3H17%2C OsWD40-49;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 17;Note=Similar to Nucleic acid binding protein.;Transcript_evidence=AK102324 (DDBJ%2C Best hit);ORF_evidence=B4FBS8 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571),WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J033090J15;Oryzabase=8580;TENOR=Os02t0677700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	27662418	27662710	.	+	.	Parent=Os02t0677700-01
Chr02	irgsp1_rep	CDS	27662711	27663163	.	+	0	Parent=Os02t0677700-01
Chr02	irgsp1_rep	CDS	27663252	27663347	.	+	0	Parent=Os02t0677700-01
Chr02	irgsp1_rep	CDS	27663440	27663529	.	+	0	Parent=Os02t0677700-01
Chr02	irgsp1_rep	CDS	27663633	27663734	.	+	0	Parent=Os02t0677700-01
Chr02	irgsp1_rep	CDS	27663817	27663963	.	+	0	Parent=Os02t0677700-01
Chr02	irgsp1_rep	CDS	27664951	27665088	.	+	0	Parent=Os02t0677700-01
Chr02	irgsp1_rep	three_prime_UTR	27665089	27666737	.	+	.	Parent=Os02t0677700-01
Chr02	irgsp1_rep	three_prime_UTR	27666815	27667350	.	+	.	Parent=Os02t0677700-01
Chr02	irgsp1_rep	mRNA	27662418	27663197	.	+	.	ID=Os02t0677700-02;Name=Os02t0677700-02;Locus_id=Os02g0677700;CGSNL Gene Symbol=C3H17;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 17;Oryzabase Gene Symbol Synonym(s)=OsC3H17%2C OsWD40-49;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 17;Note=Similar to Isoform 2 of Zinc finger CCCH domain-containing protein 17.;Transcript_evidence=AK119947 (DDBJ%2C Best hit);ORF_evidence=B7ET05 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=002-184-C01;Oryzabase=8580;TENOR=Os02t0677700-02
Chr02	irgsp1_rep	five_prime_UTR	27662418	27662710	.	+	.	Parent=Os02t0677700-02
Chr02	irgsp1_rep	CDS	27662711	27663197	.	+	0	Parent=Os02t0677700-02
Chr02	irgsp1_rep	mRNA	27667933	27671383	.	-	.	ID=Os02t0677800-01;Name=Os02t0677800-01;Locus_id=Os02g0677800;Note=Similar to 40S ribosomal protein S13.;Transcript_evidence=AK064865 (DDBJ%2C Best hit);ORF_evidence=NP_001105708.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S13/S15%2C N-terminal (IPR012606);NIAS_FLcDNA=J013000I09;TENOR=Os02t0677800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	27669477	27671383	.	-	.	Parent=Os02t0677800-01
Chr02	irgsp1_rep	CDS	27669372	27669476	.	-	0	Parent=Os02t0677800-01
Chr02	irgsp1_rep	CDS	27669055	27669282	.	-	0	Parent=Os02t0677800-01
Chr02	irgsp1_rep	three_prime_UTR	27667933	27669054	.	-	.	Parent=Os02t0677800-01
Chr02	irgsp1_rep	mRNA	27696289	27702009	.	+	.	ID=Os02t0678200-01;Name=Os02t0678200-01;Locus_id=Os02g0678200;RAP-DB Gene Symbol Synonym(s)=OsSPX-MFS2;RAP-DB Gene Name Synonym(s)=SPX-MFS protein 2;Oryzabase Gene Symbol Synonym(s)=OsSPX-MFS2%2C SPX-MFS2;Oryzabase Gene Name Synonym(s)=SPX-MFS protein 2;Note=SPX-MFS protein%2C Pi homeostasis;Transcript_evidence=AK241359;ORF_evidence=Q6EPQ3;GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral component of membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),SPX domain (IPR004331),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J065151E04;Manual Curation=December 7%2C 2015;Literature_PMID=26424157,22803610,21062869;Oryzabase=11848;TENOR=Os02t0678200-01;KEGG=Os02t0678200-01
Chr02	irgsp1_rep	five_prime_UTR	27696289	27696613	.	+	.	Parent=Os02t0678200-01
Chr02	irgsp1_rep	five_prime_UTR	27696743	27696892	.	+	.	Parent=Os02t0678200-01
Chr02	irgsp1_rep	five_prime_UTR	27698576	27698603	.	+	.	Parent=Os02t0678200-01
Chr02	irgsp1_rep	CDS	27698604	27698656	.	+	0	Parent=Os02t0678200-01
Chr02	irgsp1_rep	CDS	27699022	27699142	.	+	1	Parent=Os02t0678200-01
Chr02	irgsp1_rep	CDS	27699253	27699564	.	+	0	Parent=Os02t0678200-01
Chr02	irgsp1_rep	CDS	27699679	27699783	.	+	0	Parent=Os02t0678200-01
Chr02	irgsp1_rep	CDS	27699874	27700328	.	+	0	Parent=Os02t0678200-01
Chr02	irgsp1_rep	CDS	27700471	27700775	.	+	1	Parent=Os02t0678200-01
Chr02	irgsp1_rep	CDS	27700885	27701254	.	+	2	Parent=Os02t0678200-01
Chr02	irgsp1_rep	CDS	27701355	27701488	.	+	1	Parent=Os02t0678200-01
Chr02	irgsp1_rep	CDS	27701588	27701826	.	+	2	Parent=Os02t0678200-01
Chr02	irgsp1_rep	three_prime_UTR	27701827	27702009	.	+	.	Parent=Os02t0678200-01
Chr02	irgsp1_rep	mRNA	27702873	27705211	.	+	.	ID=Os02t0678300-01;Name=Os02t0678300-01;Locus_id=Os02g0678300;Oryzabase Gene Name Synonym(s)=HTH1-related protein;Note=Similar to protein HOTHEAD.;Transcript_evidence=AK242487 (DDBJ%2C Best hit);ORF_evidence=NP_001149739.1 (RefSeq);GO=Biological Process: alcohol metabolic process (GO:0006066),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: choline dehydrogenase activity (GO:0008812),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Glucose-methanol-choline oxidoreductase%2C N-terminal (IPR000172),Glucose-methanol-choline oxidoreductase%2C C-terminal (IPR007867),Glucose-methanol-choline oxidoreductase (IPR012132);NIAS_FLcDNA=J080306H24;Oryzabase=22386;TENOR=Os02t0678300-01;KEGG=Os02t0678300-01
Chr02	irgsp1_rep	five_prime_UTR	27702873	27702919	.	+	.	Parent=Os02t0678300-01
Chr02	irgsp1_rep	CDS	27702920	27702986	.	+	0	Parent=Os02t0678300-01
Chr02	irgsp1_rep	CDS	27703068	27703715	.	+	2	Parent=Os02t0678300-01
Chr02	irgsp1_rep	CDS	27703906	27704878	.	+	2	Parent=Os02t0678300-01
Chr02	irgsp1_rep	CDS	27704996	27705059	.	+	1	Parent=Os02t0678300-01
Chr02	irgsp1_rep	three_prime_UTR	27705060	27705211	.	+	.	Parent=Os02t0678300-01
Chr02	irgsp1_rep	mRNA	27709385	27713141	.	+	.	ID=Os02t0678400-01;Name=Os02t0678400-01;Locus_id=Os02g0678400;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK071766 (DDBJ%2C Best hit);ORF_evidence=B6STR1 (UniProt);GO=Biological Process: extracellular polysaccharide biosynthetic process (GO:0045226),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: dTDP-4-dehydrorhamnose reductase activity (GO:0008831);InterPro=dTDP-4-dehydrorhamnose reductase (IPR005913),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023111H09;Expression=AK071766;TENOR=Os02t0678400-01;KEGG=Os02t0678400-01 (EC:4.2.1.76)
Chr02	irgsp1_rep	five_prime_UTR	27709385	27709497	.	+	.	Parent=Os02t0678400-01
Chr02	irgsp1_rep	CDS	27709498	27709980	.	+	0	Parent=Os02t0678400-01
Chr02	irgsp1_rep	CDS	27712292	27712744	.	+	0	Parent=Os02t0678400-01
Chr02	irgsp1_rep	three_prime_UTR	27712745	27713141	.	+	.	Parent=Os02t0678400-01
Chr02	irgsp1_rep	mRNA	27710549	27712234	.	+	.	ID=Os02t0678601-01;Name=Os02t0678601-01;Locus_id=Os02g0678601;Note=Hypothetical gene.;Transcript_evidence=AK062580 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-100-B09;TENOR=Os02t0678601-01;KEGG=Os02t0678601-01
Chr02	irgsp1_rep	five_prime_UTR	27710549	27712004	.	+	.	Parent=Os02t0678601-01
Chr02	irgsp1_rep	CDS	27712005	27712217	.	+	0	Parent=Os02t0678601-01
Chr02	irgsp1_rep	three_prime_UTR	27712218	27712234	.	+	.	Parent=Os02t0678601-01
Chr02	irgsp1_rep	mRNA	27727857	27728960	.	+	.	ID=Os02t0678800-01;Name=Os02t0678800-01;Locus_id=Os02g0678800;RAP-DB Gene Symbol Synonym(s)=GRF10%2C OsGRF10;RAP-DB Gene Name Synonym(s)=GROWTH-REGULATING FACTOR 10%2C growth-regulating factor10;CGSNL Gene Symbol=GRF10;CGSNL Gene Name=GROWTH-REGULATING FACTOR 10;Oryzabase Gene Symbol Synonym(s)=OsGRF10;Oryzabase Gene Name Synonym(s)=growth-regulating factor10;Note=Transcriptional activator/repressor%2C Reguration of KNOX gene%2C Oskn2 (regulator of meristem function)%2C Floral organogenesis;Transcript_evidence=AK108170,FJ546694 (IR58);ORF_evidence=Q6EPP9,B9VHC3;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides (GO:0016818),Cellular Component: nucleus (GO:0005634);InterPro=Glutamine-Leucine-Glutamine%2C QLQ (IPR014978),WRC (IPR014977);NIAS_FLcDNA=002-139-H11;Manual Curation=April 15%2C 2014;Literature_PMID=24532604,15295073,24596329;Oryzabase=10284;TENOR=Os02t0678800-01;KEGG=Os02t0678800-01
Chr02	irgsp1_rep	five_prime_UTR	27727857	27727972	.	+	.	Parent=Os02t0678800-01
Chr02	irgsp1_rep	CDS	27727973	27728051	.	+	0	Parent=Os02t0678800-01
Chr02	irgsp1_rep	CDS	27728155	27728427	.	+	2	Parent=Os02t0678800-01
Chr02	irgsp1_rep	CDS	27728535	27728818	.	+	2	Parent=Os02t0678800-01
Chr02	irgsp1_rep	three_prime_UTR	27728819	27728960	.	+	.	Parent=Os02t0678800-01
Chr02	irgsp1_rep	mRNA	27737378	27738930	.	-	.	ID=Os02t0679200-01;Name=Os02t0679200-01;Locus_id=Os02g0679200;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK110789 (DDBJ%2C Best hit);ORF_evidence=B8AGT4 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=002-171-C11;Expression=AK110789;TENOR=Os02t0679200-01;KEGG=Os02t0679200-01
Chr02	irgsp1_rep	five_prime_UTR	27738918	27738930	.	-	.	Parent=Os02t0679200-01
Chr02	irgsp1_rep	CDS	27737442	27738917	.	-	0	Parent=Os02t0679200-01
Chr02	irgsp1_rep	three_prime_UTR	27737378	27737441	.	-	.	Parent=Os02t0679200-01
Chr02	irgsp1_rep	mRNA	27744016	27747252	.	+	.	ID=Os02t0679500-01;Name=Os02t0679500-01;Locus_id=Os02g0679500;Note=Similar to Rac GTPase activating protein 1.;Transcript_evidence=AK067772 (DDBJ%2C Best hit);ORF_evidence=Q6UQ72 (UniProt);GO=Biological Process: signal transduction (GO:0007165),Cellular Component: intracellular (GO:0005622),Molecular Function: protein binding (GO:0005515);InterPro=PAK-box/P21-Rho-binding (IPR000095),Rho GTPase-activating protein domain (IPR000198),Rho GTPase activation protein (IPR008936);NIAS_FLcDNA=J013120L23;Expression=AK067772;TENOR=Os02t0679500-01;KEGG=Os02t0679500-01
Chr02	irgsp1_rep	five_prime_UTR	27744016	27744016	.	+	.	Parent=Os02t0679500-01
Chr02	irgsp1_rep	CDS	27744017	27744352	.	+	0	Parent=Os02t0679500-01
Chr02	irgsp1_rep	CDS	27744474	27744577	.	+	0	Parent=Os02t0679500-01
Chr02	irgsp1_rep	CDS	27745447	27745567	.	+	1	Parent=Os02t0679500-01
Chr02	irgsp1_rep	CDS	27745675	27745794	.	+	0	Parent=Os02t0679500-01
Chr02	irgsp1_rep	CDS	27746140	27746370	.	+	0	Parent=Os02t0679500-01
Chr02	irgsp1_rep	CDS	27746471	27747010	.	+	0	Parent=Os02t0679500-01
Chr02	irgsp1_rep	three_prime_UTR	27747011	27747252	.	+	.	Parent=Os02t0679500-01
Chr02	irgsp1_rep	mRNA	27751466	27752433	.	+	.	ID=Os02t0679700-01;Name=Os02t0679700-01;Locus_id=Os02g0679700;Oryzabase Gene Symbol Synonym(s)=OsOFP6%2C OsOFP09;Oryzabase Gene Name Synonym(s)=OVATE family protein 6%2C ovate family protein 9%2C OVATE-domain containing protein 9;Note=Protein of unknown function DUF623%2C plant domain containing protein.;Transcript_evidence=AK108178 (DDBJ%2C Best hit);ORF_evidence=B8AGP6 (UniProt);InterPro=Domain of unknown function DUF623 (IPR006458);NIAS_FLcDNA=002-140-A08;Oryzabase=18302;Expression=AK108178;TENOR=Os02t0679700-01;KEGG=Os02t0679700-01
Chr02	irgsp1_rep	five_prime_UTR	27751466	27751491	.	+	.	Parent=Os02t0679700-01
Chr02	irgsp1_rep	CDS	27751492	27752337	.	+	0	Parent=Os02t0679700-01
Chr02	irgsp1_rep	three_prime_UTR	27752338	27752433	.	+	.	Parent=Os02t0679700-01
Chr02	irgsp1_rep	mRNA	27764661	27770770	.	+	.	ID=Os02t0680400-01;Name=Os02t0680400-01;Locus_id=Os02g0680400;Note=Similar to CaaX processing zinc-metallo endoprotease.;Transcript_evidence=AK102210 (DDBJ%2C Best hit);ORF_evidence=Q6EPN8 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Cellular Component: membrane (GO:0016020),Molecular Function: metalloendopeptidase activity (GO:0004222);InterPro=Peptidase M48 (IPR001915);NIAS_FLcDNA=J033087I04;Expression=AK102210;TENOR=Os02t0680400-01;KEGG=Os02t0680400-01 (EC:3.4.24.84)
Chr02	irgsp1_rep	five_prime_UTR	27764661	27764759	.	+	.	Parent=Os02t0680400-01
Chr02	irgsp1_rep	CDS	27764760	27764790	.	+	0	Parent=Os02t0680400-01
Chr02	irgsp1_rep	CDS	27765628	27765775	.	+	2	Parent=Os02t0680400-01
Chr02	irgsp1_rep	CDS	27765901	27765985	.	+	1	Parent=Os02t0680400-01
Chr02	irgsp1_rep	CDS	27766062	27766157	.	+	0	Parent=Os02t0680400-01
Chr02	irgsp1_rep	CDS	27767173	27767238	.	+	0	Parent=Os02t0680400-01
Chr02	irgsp1_rep	CDS	27767407	27767505	.	+	0	Parent=Os02t0680400-01
Chr02	irgsp1_rep	CDS	27767652	27767765	.	+	0	Parent=Os02t0680400-01
Chr02	irgsp1_rep	CDS	27767975	27768085	.	+	0	Parent=Os02t0680400-01
Chr02	irgsp1_rep	CDS	27768179	27768241	.	+	0	Parent=Os02t0680400-01
Chr02	irgsp1_rep	CDS	27768323	27768415	.	+	0	Parent=Os02t0680400-01
Chr02	irgsp1_rep	CDS	27769467	27769580	.	+	0	Parent=Os02t0680400-01
Chr02	irgsp1_rep	CDS	27769792	27769863	.	+	0	Parent=Os02t0680400-01
Chr02	irgsp1_rep	CDS	27769947	27770012	.	+	0	Parent=Os02t0680400-01
Chr02	irgsp1_rep	CDS	27770261	27770380	.	+	0	Parent=Os02t0680400-01
Chr02	irgsp1_rep	three_prime_UTR	27770381	27770770	.	+	.	Parent=Os02t0680400-01
Chr02	irgsp1_rep	mRNA	27766063	27770770	.	+	.	ID=Os02t0680400-02;Name=Os02t0680400-02;Locus_id=Os02g0680400;Note=Similar to CAAX prenyl protease 1 homolog.;Transcript_evidence=AK060498 (DDBJ%2C Best hit);ORF_evidence=Q6EPN8 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Cellular Component: membrane (GO:0016020),Molecular Function: metalloendopeptidase activity (GO:0004222);InterPro=Peptidase M48 (IPR001915);NIAS_FLcDNA=001-017-D02;Expression=AK060498;TENOR=Os02t0680400-02;KEGG=Os02t0680400-02 (EC:3.4.24.84)
Chr02	irgsp1_rep	five_prime_UTR	27766063	27766064	.	+	.	Parent=Os02t0680400-02
Chr02	irgsp1_rep	CDS	27766065	27766157	.	+	0	Parent=Os02t0680400-02
Chr02	irgsp1_rep	CDS	27767173	27767238	.	+	0	Parent=Os02t0680400-02
Chr02	irgsp1_rep	CDS	27767407	27767505	.	+	0	Parent=Os02t0680400-02
Chr02	irgsp1_rep	CDS	27767652	27767765	.	+	0	Parent=Os02t0680400-02
Chr02	irgsp1_rep	CDS	27767975	27768085	.	+	0	Parent=Os02t0680400-02
Chr02	irgsp1_rep	CDS	27768179	27768241	.	+	0	Parent=Os02t0680400-02
Chr02	irgsp1_rep	CDS	27768323	27768415	.	+	0	Parent=Os02t0680400-02
Chr02	irgsp1_rep	CDS	27769467	27769580	.	+	0	Parent=Os02t0680400-02
Chr02	irgsp1_rep	CDS	27769792	27769863	.	+	0	Parent=Os02t0680400-02
Chr02	irgsp1_rep	CDS	27769947	27770012	.	+	0	Parent=Os02t0680400-02
Chr02	irgsp1_rep	CDS	27770261	27770380	.	+	0	Parent=Os02t0680400-02
Chr02	irgsp1_rep	three_prime_UTR	27770381	27770770	.	+	.	Parent=Os02t0680400-02
Chr02	irgsp1_rep	mRNA	27770811	27773155	.	+	.	ID=Os02t0680500-01;Name=Os02t0680500-01;Locus_id=Os02g0680500;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK106401 (DDBJ%2C Best hit);ORF_evidence=B8AGP8 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=002-102-G07;Expression=AK106401;TENOR=Os02t0680500-01;KEGG=Os02t0680500-01
Chr02	irgsp1_rep	five_prime_UTR	27770811	27771091	.	+	.	Parent=Os02t0680500-01
Chr02	irgsp1_rep	CDS	27771092	27771180	.	+	0	Parent=Os02t0680500-01
Chr02	irgsp1_rep	CDS	27771927	27773094	.	+	1	Parent=Os02t0680500-01
Chr02	irgsp1_rep	three_prime_UTR	27773095	27773155	.	+	.	Parent=Os02t0680500-01
Chr02	irgsp1_rep	mRNA	27773497	27775510	.	-	.	ID=Os02t0680600-01;Name=Os02t0680600-01;Locus_id=Os02g0680600;RAP-DB Gene Symbol Synonym(s)=OsIspF%2C IspF;RAP-DB Gene Name Synonym(s)=2-C-methyl-d-erythritol 2%2C4-cyclodiphosphate synthase;Oryzabase Gene Symbol Synonym(s)=OsMCS%2C MCS%2C IspF%2C OsIspF;Oryzabase Gene Name Synonym(s)=2-C-methyl-D-erythritol 2%2C 4-cyclodiphosphate synthase%2C MECDP synthase;Note=2-C-methyl-d-erythritol 2%2C4-cyclodiphosphate synthase%2C Isoprenoid biosynthesis%2C Chloroplast development;Transcript_evidence=AK060238;ORF_evidence=A0A0N7KFV8;GO=Biological Process: terpenoid biosynthetic process (GO:0016114),Molecular Function: 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase activity (GO:0008685);InterPro=2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase superfamily (IPR036571),2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase (IPR003526),2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase%2C conserved site (IPR020555);NIAS_FLcDNA=001-003-D03;Manual Curation=September 14%2C 2018;Literature_PMID=29143298;Oryzabase=14688;Expression=AK060238;TENOR=Os02t0680600-01;KEGG=Os02t0680600-01 (EC:4.6.1.12);Subcellular location=chloroplast (GO:0009507)
Chr02	irgsp1_rep	five_prime_UTR	27775504	27775510	.	-	.	Parent=Os02t0680600-01
Chr02	irgsp1_rep	CDS	27775041	27775503	.	-	0	Parent=Os02t0680600-01
Chr02	irgsp1_rep	CDS	27774789	27774919	.	-	2	Parent=Os02t0680600-01
Chr02	irgsp1_rep	CDS	27773634	27773867	.	-	0	Parent=Os02t0680600-01
Chr02	irgsp1_rep	three_prime_UTR	27773497	27773633	.	-	.	Parent=Os02t0680600-01
Chr02	irgsp1_rep	mRNA	27776483	27781443	.	-	.	ID=Os02t0680700-01;Name=Os02t0680700-01;Locus_id=Os02g0680700;Note=Similar to DNA binding protein.;Transcript_evidence=AK288059 (DDBJ%2C Best hit);ORF_evidence=B6STR4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J075153L04;TENOR=Os02t0680700-01;KEGG=Os02t0680700-01
Chr02	irgsp1_rep	five_prime_UTR	27781270	27781443	.	-	.	Parent=Os02t0680700-01
Chr02	irgsp1_rep	CDS	27781109	27781269	.	-	0	Parent=Os02t0680700-01
Chr02	irgsp1_rep	CDS	27780092	27780149	.	-	1	Parent=Os02t0680700-01
Chr02	irgsp1_rep	CDS	27779655	27779778	.	-	0	Parent=Os02t0680700-01
Chr02	irgsp1_rep	CDS	27779418	27779540	.	-	2	Parent=Os02t0680700-01
Chr02	irgsp1_rep	CDS	27779185	27779307	.	-	2	Parent=Os02t0680700-01
Chr02	irgsp1_rep	CDS	27778692	27778801	.	-	2	Parent=Os02t0680700-01
Chr02	irgsp1_rep	CDS	27778369	27778428	.	-	0	Parent=Os02t0680700-01
Chr02	irgsp1_rep	CDS	27777280	27777380	.	-	0	Parent=Os02t0680700-01
Chr02	irgsp1_rep	CDS	27777189	27777204	.	-	1	Parent=Os02t0680700-01
Chr02	irgsp1_rep	three_prime_UTR	27776483	27777188	.	-	.	Parent=Os02t0680700-01
Chr02	irgsp1_rep	mRNA	27798048	27803714	.	+	.	ID=Os02t0681000-01;Name=Os02t0681000-01;Locus_id=Os02g0681000;Note=Mechanosensitive ion channel MscS domain containing protein.;Transcript_evidence=AK103328 (DDBJ%2C Best hit);ORF_evidence=Q01KI1 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020);InterPro=Mechanosensitive ion channel MscS (IPR006685),Like-Sm ribonucleoprotein (LSM)-related domain (IPR010920),Mechanosensitive ion channel MscS%2C transmembrane-2 (IPR011014);NIAS_FLcDNA=J033125M22;Expression=AK103328;TENOR=Os02t0681000-01;KEGG=Os02t0681000-01
Chr02	irgsp1_rep	five_prime_UTR	27798048	27798282	.	+	.	Parent=Os02t0681000-01
Chr02	irgsp1_rep	five_prime_UTR	27799496	27799583	.	+	.	Parent=Os02t0681000-01
Chr02	irgsp1_rep	CDS	27799584	27800347	.	+	0	Parent=Os02t0681000-01
Chr02	irgsp1_rep	CDS	27800764	27801035	.	+	1	Parent=Os02t0681000-01
Chr02	irgsp1_rep	CDS	27801207	27801307	.	+	2	Parent=Os02t0681000-01
Chr02	irgsp1_rep	CDS	27801986	27802093	.	+	0	Parent=Os02t0681000-01
Chr02	irgsp1_rep	CDS	27802235	27802444	.	+	0	Parent=Os02t0681000-01
Chr02	irgsp1_rep	CDS	27803399	27803476	.	+	0	Parent=Os02t0681000-01
Chr02	irgsp1_rep	three_prime_UTR	27803477	27803714	.	+	.	Parent=Os02t0681000-01
Chr02	irgsp1_rep	mRNA	27803413	27805631	.	-	.	ID=Os02t0681100-01;Name=Os02t0681100-01;Locus_id=Os02g0681100;Note=Protein of unknown function DUF604 family protein.;Transcript_evidence=AK100584 (DDBJ%2C Best hit);ORF_evidence=Q01KI0 (UniProt);InterPro=Protein of unknown function DUF604 (IPR006740);NIAS_FLcDNA=J023106A15;Expression=AK100584;TENOR=Os02t0681100-01;KEGG=Os02t0681100-01
Chr02	irgsp1_rep	five_prime_UTR	27805407	27805631	.	-	.	Parent=Os02t0681100-01
Chr02	irgsp1_rep	CDS	27803970	27805406	.	-	0	Parent=Os02t0681100-01
Chr02	irgsp1_rep	CDS	27803747	27803860	.	-	0	Parent=Os02t0681100-01
Chr02	irgsp1_rep	three_prime_UTR	27803413	27803746	.	-	.	Parent=Os02t0681100-01
Chr02	irgsp1_rep	mRNA	27807061	27808092	.	-	.	ID=Os02t0681200-01;Name=Os02t0681200-01;Locus_id=Os02g0681200;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK099314 (DDBJ%2C Best hit),AK071853 (DDBJ%2C Best hit),AK104122 (DDBJ%2C Best hit);ORF_evidence=A2X8C1 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J023150J15,J023114C23,006-203-C10;Expression=AK099314;TENOR=Os02t0681200-01;KEGG=Os02t0681200-01
Chr02	irgsp1_rep	five_prime_UTR	27808017	27808092	.	-	.	Parent=Os02t0681200-01
Chr02	irgsp1_rep	CDS	27807378	27808016	.	-	0	Parent=Os02t0681200-01
Chr02	irgsp1_rep	three_prime_UTR	27807061	27807377	.	-	.	Parent=Os02t0681200-01
Chr02	irgsp1_rep	mRNA	27837694	27838482	.	+	.	ID=Os02t0681632-00;Name=Os02t0681632-00;Locus_id=Os02g0681632;Note=Peptidoglycan-binding Lysin subgroup domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2X8C2 (UniProt);GO=Biological Process: cell wall macromolecule catabolic process (GO:0016998);InterPro=Peptidoglycan-binding Lysin subgroup (IPR002482),Peptidoglycan-binding lysin domain (IPR018392);TENOR=Os02t0681632-00;KEGG=Os02t0681632-00
Chr02	irgsp1_rep	CDS	27837694	27838482	.	+	0	Parent=Os02t0681632-00
Chr02	irgsp1_rep	mRNA	27840042	27841235	.	+	.	ID=Os02t0681700-01;Name=Os02t0681700-01;Locus_id=Os02g0681700;CGSNL Gene Symbol=RLCK83;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 83;Oryzabase Gene Symbol Synonym(s)=OsRLCK83;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 83;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK106773 (DDBJ%2C Best hit);ORF_evidence=B9F1U3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-115-G02;Oryzabase=18794;Expression=AK106773;TENOR=Os02t0681700-01;KEGG=Os02t0681700-01
Chr02	irgsp1_rep	five_prime_UTR	27840042	27840228	.	+	.	Parent=Os02t0681700-01
Chr02	irgsp1_rep	CDS	27840229	27841002	.	+	0	Parent=Os02t0681700-01
Chr02	irgsp1_rep	three_prime_UTR	27841003	27841235	.	+	.	Parent=Os02t0681700-01
Chr02	irgsp1_rep	mRNA	27853890	27856029	.	-	.	ID=Os02t0681900-01;Name=Os02t0681900-01;Locus_id=Os02g0681900;CGSNL Gene Symbol=GRAS10;CGSNL Gene Name=GRAS PROTEIN 10;Oryzabase Gene Symbol Synonym(s)=OsGRAS-10%2C OsGRAS10%2C GRAS-10;Oryzabase Gene Name Synonym(s)=GRAS protein 10;Note=GRAS transcription factor domain containing protein.;Transcript_evidence=AK120775 (DDBJ%2C Best hit);ORF_evidence=NP_001147939.1 (RefSeq);InterPro=Transcription factor GRAS (IPR005202);NIAS_FLcDNA=J023009G09;Oryzabase=22784;Expression=AK120775;TENOR=Os02t0681900-01;KEGG=Os02t0681900-01
Chr02	irgsp1_rep	five_prime_UTR	27855965	27856029	.	-	.	Parent=Os02t0681900-01
Chr02	irgsp1_rep	CDS	27854108	27855964	.	-	0	Parent=Os02t0681900-01
Chr02	irgsp1_rep	three_prime_UTR	27853890	27854107	.	-	.	Parent=Os02t0681900-01
Chr02	irgsp1_rep	mRNA	27875979	27883946	.	+	.	ID=Os02t0682200-01;Name=Os02t0682200-01;Locus_id=Os02g0682200;RAP-DB Gene Symbol Synonym(s)=MFO1%2C OsMADS6%2C MADS6;RAP-DB Gene Name Synonym(s)=MOSAIC FLORAL ORGANS 1%2C MADS box gene6%2C AGL6-like MADS Box gene%2C mosaic floral organs 1;CGSNL Gene Symbol=MFO1;CGSNL Gene Name=MOSAIC FLORAL ORGANS 1;Oryzabase Gene Symbol Synonym(s)=OsMADS6%2C MADS6%2C OsMFO1;Oryzabase Gene Name Synonym(s)=MADS box gene6%2C AGL6-like MADS Box gene%2C mosaic floral organs 1;Note=MADS-box transcription factor%2C Regulation of floral organ identity and meristem fate%2C Endosperm development;Transcript_evidence=AK069103,FJ666318,U78782 (M201);ORF_evidence=Q6EU39;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700),Molecular Function: protein dimerization activity (GO:0046983),Cellular Component: nucleus (GO:0005634);InterPro=Transcription factor%2C MADS-box (IPR002100),Transcription factor%2C K-box (IPR002487);NIAS_FLcDNA=J023006N09;Manual Curation=December 24%2C 2015;Literature_PMID=19820190,20822505,10444103;Oryzabase=3078;Expression=AK069103;TENOR=Os02t0682200-01;KEGG=Os02t0682200-01
Chr02	irgsp1_rep	five_prime_UTR	27875979	27876110	.	+	.	Parent=Os02t0682200-01
Chr02	irgsp1_rep	CDS	27876111	27876292	.	+	0	Parent=Os02t0682200-01
Chr02	irgsp1_rep	CDS	27879051	27879129	.	+	1	Parent=Os02t0682200-01
Chr02	irgsp1_rep	CDS	27881066	27881127	.	+	0	Parent=Os02t0682200-01
Chr02	irgsp1_rep	CDS	27881359	27881458	.	+	1	Parent=Os02t0682200-01
Chr02	irgsp1_rep	CDS	27882787	27882828	.	+	0	Parent=Os02t0682200-01
Chr02	irgsp1_rep	CDS	27883138	27883179	.	+	0	Parent=Os02t0682200-01
Chr02	irgsp1_rep	CDS	27883277	27883422	.	+	0	Parent=Os02t0682200-01
Chr02	irgsp1_rep	CDS	27883599	27883698	.	+	1	Parent=Os02t0682200-01
Chr02	irgsp1_rep	three_prime_UTR	27883699	27883946	.	+	.	Parent=Os02t0682200-01
Chr02	irgsp1_rep	mRNA	27887212	27888250	.	-	.	ID=Os02t0682300-01;Name=Os02t0682300-01;Locus_id=Os02g0682300;RAP-DB Gene Symbol Synonym(s)=DHS;RAP-DB Gene Name Synonym(s)=DROUGHT HYPERSENSITIVE;CGSNL Gene Symbol=DHS;CGSNL Gene Name=DROUGHT HYPERSENSITIVE;Note=RING-type E3 ligase%2C Negative regulation of cuticular wax biosynthesis%2C Drought stress response;Transcript_evidence=AK107937;ORF_evidence=Q6EU38;InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841);NIAS_FLcDNA=002-135-A09;Manual Curation=February 14%2C 2018;Literature_PMID=29237723;Oryzabase=22275;Expression=AK107937;TENOR=Os02t0682300-01;KEGG=Os02t0682300-01
Chr02	irgsp1_rep	five_prime_UTR	27888108	27888250	.	-	.	Parent=Os02t0682300-01
Chr02	irgsp1_rep	CDS	27887613	27888107	.	-	0	Parent=Os02t0682300-01
Chr02	irgsp1_rep	three_prime_UTR	27887212	27887612	.	-	.	Parent=Os02t0682300-01
Chr02	irgsp1_rep	mRNA	27906512	27909385	.	-	.	ID=Os02t0682500-01;Name=Os02t0682500-01;Locus_id=Os02g0682500;Oryzabase Gene Symbol Synonym(s)=OsWD40-50%2C OsTTG1A%2C TTG1A%2C OsTTG1%2C TTG1;Oryzabase Gene Name Synonym(s)=TRANSPARENT TESTA GLABRA1A%2C TRANSPARENT TESTA GLABRA 1A;Note=Similar to TRANSPARENT TESTA GLABRA 1 protein (TTG1 protein).;Transcript_evidence=AK112090 (DDBJ%2C Best hit);ORF_evidence=Q3V810 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=002-105-H12;Oryzabase=10731;Expression=AK112090;TENOR=Os02t0682500-01;KEGG=Os02t0682500-01
Chr02	irgsp1_rep	five_prime_UTR	27909194	27909385	.	-	.	Parent=Os02t0682500-01
Chr02	irgsp1_rep	CDS	27908126	27909193	.	-	0	Parent=Os02t0682500-01
Chr02	irgsp1_rep	three_prime_UTR	27908122	27908125	.	-	.	Parent=Os02t0682500-01
Chr02	irgsp1_rep	three_prime_UTR	27906512	27906913	.	-	.	Parent=Os02t0682500-01
Chr02	irgsp1_rep	mRNA	27909704	27912036	.	-	.	ID=Os02t0682600-01;Name=Os02t0682600-01;Locus_id=Os02g0682600;Note=Zinc finger%2C Tim10/DDP-type family protein.;Transcript_evidence=AK108470 (DDBJ%2C Best hit);ORF_evidence=Q9XGY5 (UniProt);GO=Biological Process: protein targeting to mitochondrion (GO:0006626),Biological Process: protein import into mitochondrial inner membrane (GO:0045039),Cellular Component: mitochondrial intermembrane space protein transporter complex (GO:0042719);InterPro=Mitochondrial inner membrane translocase complex%2C Tim8/9/10/13-zinc finger-like (IPR004217);NIAS_FLcDNA=002-143-E05;Expression=AK108470;TENOR=Os02t0682600-01;KEGG=Os02t0682600-01
Chr02	irgsp1_rep	five_prime_UTR	27911938	27912036	.	-	.	Parent=Os02t0682600-01
Chr02	irgsp1_rep	CDS	27911833	27911937	.	-	0	Parent=Os02t0682600-01
Chr02	irgsp1_rep	CDS	27909892	27910041	.	-	0	Parent=Os02t0682600-01
Chr02	irgsp1_rep	three_prime_UTR	27909704	27909891	.	-	.	Parent=Os02t0682600-01
Chr02	irgsp1_rep	mRNA	27915214	27915788	.	+	.	ID=Os02t0682700-00;Name=Os02t0682700-00;Locus_id=Os02g0682700;Note=Similar to protein binding protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001150294.1 (RefSeq);TENOR=Os02t0682700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	27915214	27915306	.	+	0	Parent=Os02t0682700-00
Chr02	irgsp1_rep	CDS	27915390	27915505	.	+	0	Parent=Os02t0682700-00
Chr02	irgsp1_rep	CDS	27915605	27915788	.	+	1	Parent=Os02t0682700-00
Chr02	irgsp1_rep	mRNA	27932828	27934315	.	+	.	ID=Os02t0683100-00;Name=Os02t0683100-00;Locus_id=Os02g0683100;Note=Hypothetical protein.;Transcript_evidence=tplb0021g13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0683100-00
Chr02	irgsp1_rep	five_prime_UTR	27932828	27933141	.	+	.	Parent=Os02t0683100-00
Chr02	irgsp1_rep	CDS	27933142	27933363	.	+	0	Parent=Os02t0683100-00
Chr02	irgsp1_rep	three_prime_UTR	27933364	27934315	.	+	.	Parent=Os02t0683100-00
Chr02	irgsp1_rep	mRNA	27932831	27934689	.	-	.	ID=Os02t0683500-01;Name=Os02t0683500-01;Locus_id=Os02g0683500;RAP-DB Gene Symbol Synonym(s)=RAV6;RAP-DB Gene Name Synonym(s)=Related to ABI3/VP1%2C RELATED TO ABSCISIC ACID INSENSITIVE3 (ABI3)/VIVIPAROUS1 (VP1) 6;Oryzabase Gene Symbol Synonym(s)=RAV6;Oryzabase Gene Name Synonym(s)=RELATED TO ABSCISIC ACID INSENSITIVE3 (ABI3)/VIVIPAROUS1 (VP1) 6%2C RAV family gene 6;Note=B3 DNA-binding domain-containing protein%2C Brassinosteroid (BR) homeostasis;Transcript_evidence=AK109908;ORF_evidence=Q6EU30;GO=Molecular Function: DNA binding (GO:0003677);InterPro=DNA-binding pseudobarrel domain (IPR015300),B3 DNA binding domain (IPR003340);NIAS_FLcDNA=002-149-G07;Manual Curation=November 11%2C 2015;Literature_PMID=26351308;Oryzabase=22351;Expression=AK109908;TENOR=Os02t0683500-01;KEGG=Os02t0683500-01
Chr02	irgsp1_rep	five_prime_UTR	27934316	27934689	.	-	.	Parent=Os02t0683500-01
Chr02	irgsp1_rep	CDS	27933077	27934315	.	-	0	Parent=Os02t0683500-01
Chr02	irgsp1_rep	three_prime_UTR	27932831	27933076	.	-	.	Parent=Os02t0683500-01
Chr02	irgsp1_rep	mRNA	27959797	27960558	.	+	.	ID=Os02t0683800-01;Name=Os02t0683800-01;Locus_id=Os02g0683800;Note=Conserved hypothetical protein.;Transcript_evidence=AK072580 (DDBJ%2C Best hit);ORF_evidence=B8AGQ5 (UniProt);NIAS_FLcDNA=J023124L24;Expression=AK072580;TENOR=Os02t0683800-01;KEGG=Os02t0683800-01
Chr02	irgsp1_rep	five_prime_UTR	27959797	27959850	.	+	.	Parent=Os02t0683800-01
Chr02	irgsp1_rep	CDS	27959851	27959917	.	+	0	Parent=Os02t0683800-01
Chr02	irgsp1_rep	CDS	27960001	27960076	.	+	2	Parent=Os02t0683800-01
Chr02	irgsp1_rep	CDS	27960156	27960483	.	+	1	Parent=Os02t0683800-01
Chr02	irgsp1_rep	three_prime_UTR	27960484	27960558	.	+	.	Parent=Os02t0683800-01
Chr02	irgsp1_rep	mRNA	27962225	27965214	.	+	.	ID=Os02t0683900-01;Name=Os02t0683900-01;Locus_id=Os02g0683900;Note=Protein of unknown function DUF1084 family protein.;Transcript_evidence=AK070614 (DDBJ%2C Best hit);ORF_evidence=B6TCL4 (UniProt);InterPro=Domain of unknown function DUF1084 (IPR009457);NIAS_FLcDNA=J023061N23;Expression=AK070614;TENOR=Os02t0683900-01;KEGG=Os02t0683900-01
Chr02	irgsp1_rep	five_prime_UTR	27962225	27962347	.	+	.	Parent=Os02t0683900-01
Chr02	irgsp1_rep	CDS	27962348	27962479	.	+	0	Parent=Os02t0683900-01
Chr02	irgsp1_rep	CDS	27963180	27963270	.	+	0	Parent=Os02t0683900-01
Chr02	irgsp1_rep	CDS	27963355	27963407	.	+	2	Parent=Os02t0683900-01
Chr02	irgsp1_rep	CDS	27963497	27963661	.	+	0	Parent=Os02t0683900-01
Chr02	irgsp1_rep	CDS	27964051	27964169	.	+	0	Parent=Os02t0683900-01
Chr02	irgsp1_rep	CDS	27964387	27964504	.	+	1	Parent=Os02t0683900-01
Chr02	irgsp1_rep	CDS	27964603	27964680	.	+	0	Parent=Os02t0683900-01
Chr02	irgsp1_rep	CDS	27964833	27964931	.	+	0	Parent=Os02t0683900-01
Chr02	irgsp1_rep	three_prime_UTR	27964932	27965214	.	+	.	Parent=Os02t0683900-01
Chr02	irgsp1_rep	mRNA	27962286	27963766	.	+	.	ID=Os02t0683900-02;Name=Os02t0683900-02;Locus_id=Os02g0683900;Note=Similar to T5E21.3.;Transcript_evidence=AK070960 (DDBJ%2C Best hit);ORF_evidence=Q9MA29 (UniProt);InterPro=Domain of unknown function DUF1084 (IPR009457);NIAS_FLcDNA=J023068B22;TENOR=Os02t0683900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	27962286	27963445	.	+	.	Parent=Os02t0683900-02
Chr02	irgsp1_rep	CDS	27963446	27963694	.	+	0	Parent=Os02t0683900-02
Chr02	irgsp1_rep	three_prime_UTR	27963695	27963766	.	+	.	Parent=Os02t0683900-02
Chr02	irgsp1_rep	mRNA	27965554	27966300	.	+	.	ID=Os02t0684000-00;Name=Os02t0684000-00;Locus_id=Os02g0684000;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=EU955505 (DDBJ);ORF_evidence=NP_001047757.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Tetratricopeptide-like helical (IPR011990);TENOR=Os02t0684000-00;KEGG=Os02t0684000-00
Chr02	irgsp1_rep	five_prime_UTR	27965554	27965592	.	+	.	Parent=Os02t0684000-00
Chr02	irgsp1_rep	CDS	27965593	27966300	.	+	0	Parent=Os02t0684000-00
Chr02	irgsp1_rep	mRNA	27967626	27968925	.	-	.	ID=Os02t0684100-00;Name=Os02t0684100-00;Locus_id=Os02g0684100;Note=Sulfotransferase domain domain containing protein.;Transcript_evidence=FP098284 (DDBJ);ORF_evidence=NP_001047758.2 (RefSeq);GO=Molecular Function: sulfotransferase activity (GO:0008146);InterPro=Sulfotransferase domain (IPR000863);TENOR=Os02t0684100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	27967768	27968925	.	-	0	Parent=Os02t0684100-00
Chr02	irgsp1_rep	three_prime_UTR	27967626	27967767	.	-	.	Parent=Os02t0684100-00
Chr02	irgsp1_rep	mRNA	27970821	27979810	.	-	.	ID=Os02t0684150-00;Name=Os02t0684150-00;Locus_id=Os02g0684150;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=XP_002452745.1 (RefSeq);TENOR=Os02t0684150-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	27979631	27979810	.	-	0	Parent=Os02t0684150-00
Chr02	irgsp1_rep	CDS	27978343	27978873	.	-	0	Parent=Os02t0684150-00
Chr02	irgsp1_rep	CDS	27977656	27978264	.	-	0	Parent=Os02t0684150-00
Chr02	irgsp1_rep	CDS	27971563	27972087	.	-	0	Parent=Os02t0684150-00
Chr02	irgsp1_rep	CDS	27970821	27971477	.	-	0	Parent=Os02t0684150-00
Chr02	irgsp1_rep	mRNA	27986592	27988901	.	+	.	ID=Os02t0684300-01;Name=Os02t0684300-01;Locus_id=Os02g0684300;Note=Nucleoporin protein Ndc1-Nup domain containing protein.;Transcript_evidence=AK108514 (DDBJ%2C Best hit);ORF_evidence=A3AA67 (UniProt);InterPro=Nucleoporin protein Ndc1-Nup (IPR019049);NIAS_FLcDNA=002-144-A08;TENOR=Os02t0684300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	27986592	27986592	.	+	.	Parent=Os02t0684300-01
Chr02	irgsp1_rep	CDS	27986593	27986877	.	+	0	Parent=Os02t0684300-01
Chr02	irgsp1_rep	CDS	27988376	27988849	.	+	0	Parent=Os02t0684300-01
Chr02	irgsp1_rep	three_prime_UTR	27988850	27988901	.	+	.	Parent=Os02t0684300-01
Chr02	irgsp1_rep	mRNA	27989526	27990398	.	-	.	ID=Os02t0684400-01;Name=Os02t0684400-01;Locus_id=Os02g0684400;CGSNL Gene Symbol=OXS3;CGSNL Gene Name=OXIDATIVE STRESS 3;Oryzabase Gene Symbol Synonym(s)=OsOXS3;Note=Similar to OXS3 (OXIDATIVE STRESS 3).;Transcript_evidence=AK065103 (DDBJ%2C Best hit);ORF_evidence=NP_200466.1 (RefSeq);NIAS_FLcDNA=J013001N07;Oryzabase=22443;Expression=AK065103;TENOR=Os02t0684400-01;KEGG=Os02t0684400-01
Chr02	irgsp1_rep	five_prime_UTR	27990349	27990398	.	-	.	Parent=Os02t0684400-01
Chr02	irgsp1_rep	CDS	27990137	27990348	.	-	0	Parent=Os02t0684400-01
Chr02	irgsp1_rep	CDS	27989712	27990027	.	-	1	Parent=Os02t0684400-01
Chr02	irgsp1_rep	three_prime_UTR	27989526	27989711	.	-	.	Parent=Os02t0684400-01
Chr02	irgsp1_rep	mRNA	27994105	27994677	.	-	.	ID=Os02t0684500-00;Name=Os02t0684500-00;Locus_id=Os02g0684500;Note=Similar to Histone H4.;Transcript_evidence=FP095140 (DDBJ);ORF_evidence=XP_002310853.1 (RefSeq);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H4 (IPR001951),Histone core (IPR007125),Histone-fold (IPR009072),Histone H4%2C conserved site (IPR019809);TENOR=Os02t0684500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	27994648	27994677	.	-	.	Parent=Os02t0684500-00
Chr02	irgsp1_rep	CDS	27994336	27994647	.	-	0	Parent=Os02t0684500-00
Chr02	irgsp1_rep	three_prime_UTR	27994248	27994335	.	-	.	Parent=Os02t0684500-00
Chr02	irgsp1_rep	three_prime_UTR	27994105	27994189	.	-	.	Parent=Os02t0684500-00
Chr02	irgsp1_rep	mRNA	27996933	27998650	.	+	.	ID=Os02t0684600-01;Name=Os02t0684600-01;Locus_id=Os02g0684600;Note=Similar to predicted protein.;Transcript_evidence=AK242965 (DDBJ%2C Best hit);ORF_evidence=F2DMI9 (UniProt);NIAS_FLcDNA=J090090N19;TENOR=Os02t0684600-01;KEGG=Os02t0684600-01
Chr02	irgsp1_rep	CDS	27996933	27997340	.	+	0	Parent=Os02t0684600-01
Chr02	irgsp1_rep	three_prime_UTR	27997341	27997912	.	+	.	Parent=Os02t0684600-01
Chr02	irgsp1_rep	three_prime_UTR	27998012	27998119	.	+	.	Parent=Os02t0684600-01
Chr02	irgsp1_rep	three_prime_UTR	27998220	27998650	.	+	.	Parent=Os02t0684600-01
Chr02	irgsp1_rep	mRNA	28012811	28020849	.	-	.	ID=Os02t0684800-01;Name=Os02t0684800-01;Locus_id=Os02g0684800;Note=Hypothetical conserved gene.;Transcript_evidence=AK064605 (DDBJ%2C Best hit);ORF_evidence=B9F1V0 (UniProt);NIAS_FLcDNA=002-113-A03;Expression=AK064605;TENOR=Os02t0684800-01;KEGG=Os02t0684800-01
Chr02	irgsp1_rep	five_prime_UTR	28020662	28020849	.	-	.	Parent=Os02t0684800-01
Chr02	irgsp1_rep	five_prime_UTR	28015249	28015337	.	-	.	Parent=Os02t0684800-01
Chr02	irgsp1_rep	five_prime_UTR	28013600	28015039	.	-	.	Parent=Os02t0684800-01
Chr02	irgsp1_rep	CDS	28013438	28013599	.	-	0	Parent=Os02t0684800-01
Chr02	irgsp1_rep	CDS	28013272	28013310	.	-	0	Parent=Os02t0684800-01
Chr02	irgsp1_rep	three_prime_UTR	28012811	28013271	.	-	.	Parent=Os02t0684800-01
Chr02	irgsp1_rep	mRNA	28018649	28020515	.	+	.	ID=Os02t0684900-01;Name=Os02t0684900-01;Locus_id=Os02g0684900;Note=Similar to Chromosome condensation regulator protein (Fragment).;Transcript_evidence=AK106462 (DDBJ%2C Best hit);ORF_evidence=Q6ZHD3 (UniProt);GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C FYVE-type (IPR000306),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Brevis radix-like domain (IPR013591),Zinc finger%2C FYVE-related (IPR017455);NIAS_FLcDNA=002-103-G08;Expression=AK106462;TENOR=Os02t0684900-01;KEGG=Os02t0684900-01
Chr02	irgsp1_rep	five_prime_UTR	28018649	28018649	.	+	.	Parent=Os02t0684900-01
Chr02	irgsp1_rep	CDS	28018650	28019285	.	+	0	Parent=Os02t0684900-01
Chr02	irgsp1_rep	CDS	28019423	28019569	.	+	0	Parent=Os02t0684900-01
Chr02	irgsp1_rep	CDS	28019655	28020067	.	+	0	Parent=Os02t0684900-01
Chr02	irgsp1_rep	CDS	28020163	28020262	.	+	1	Parent=Os02t0684900-01
Chr02	irgsp1_rep	three_prime_UTR	28020263	28020515	.	+	.	Parent=Os02t0684900-01
Chr02	irgsp1_rep	mRNA	28041117	28044149	.	-	.	ID=Os02t0685200-01;Name=Os02t0685200-01;Locus_id=Os02g0685200;RAP-DB Gene Symbol Synonym(s)=OsMyb1R%2C LHY-like_Chr.2%2C CMYB1;RAP-DB Gene Name Synonym(s)=MYB transcription factor OsMyb1R%2C Cold induced MYB 1;Oryzabase Gene Symbol Synonym(s)=OsMyb1R%2C LHY-like_Chr.2;Oryzabase Gene Name Synonym(s)=MYB transcription factor OsMyb1R;Note=MYB transcription factor%2C Transcriptional activator in mediating stress and rhythm responsivegene expression;Transcript_evidence=AK111726;ORF_evidence=Q6ZHD2;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeodomain-like (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930),Myb domain%2C plants (IPR006447);NIAS_FLcDNA=J023036F23;Manual Curation=December 8%2C 2016;Literature_PMID=24977183;Oryzabase=11250;Expression=AK111726;TENOR=Os02t0685200-01;KEGG=Os02t0685200-01
Chr02	irgsp1_rep	five_prime_UTR	28043944	28044149	.	-	.	Parent=Os02t0685200-01
Chr02	irgsp1_rep	CDS	28043923	28043943	.	-	0	Parent=Os02t0685200-01
Chr02	irgsp1_rep	CDS	28043651	28043779	.	-	0	Parent=Os02t0685200-01
Chr02	irgsp1_rep	CDS	28043403	28043514	.	-	0	Parent=Os02t0685200-01
Chr02	irgsp1_rep	CDS	28043239	28043300	.	-	2	Parent=Os02t0685200-01
Chr02	irgsp1_rep	CDS	28042562	28043005	.	-	0	Parent=Os02t0685200-01
Chr02	irgsp1_rep	CDS	28041516	28042223	.	-	0	Parent=Os02t0685200-01
Chr02	irgsp1_rep	three_prime_UTR	28041117	28041515	.	-	.	Parent=Os02t0685200-01
Chr02	irgsp1_rep	mRNA	28042739	28043474	.	+	.	ID=Os02t0685350-00;Name=Os02t0685350-00;Locus_id=Os02g0685350;Note=Hypothetical gene.;Transcript_evidence=EU951957 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0685350-00
Chr02	irgsp1_rep	five_prime_UTR	28042739	28042934	.	+	.	Parent=Os02t0685350-00
Chr02	irgsp1_rep	CDS	28042935	28043135	.	+	0	Parent=Os02t0685350-00
Chr02	irgsp1_rep	CDS	28043197	28043474	.	+	0	Parent=Os02t0685350-00
Chr02	irgsp1_rep	mRNA	28079035	28081773	.	-	.	ID=Os02t0685600-01;Name=Os02t0685600-01;Locus_id=Os02g0685600;Oryzabase Gene Symbol Synonym(s)=OsPP2C25%2C PP2C25%2C OsPP36;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C25%2C protein phosphatase 2C 25%2C protein phosphatase 36;Note=Similar to Protein phosphatase 2C-like.;Transcript_evidence=AK111835 (DDBJ%2C Best hit);ORF_evidence=B6TAL6 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J023136N03;Oryzabase=17901;Expression=AK111835;TENOR=Os02t0685600-01;KEGG=Os02t0685600-01
Chr02	irgsp1_rep	five_prime_UTR	28081659	28081773	.	-	.	Parent=Os02t0685600-01
Chr02	irgsp1_rep	five_prime_UTR	28081478	28081566	.	-	.	Parent=Os02t0685600-01
Chr02	irgsp1_rep	CDS	28081168	28081477	.	-	0	Parent=Os02t0685600-01
Chr02	irgsp1_rep	CDS	28080184	28080548	.	-	2	Parent=Os02t0685600-01
Chr02	irgsp1_rep	CDS	28079554	28079790	.	-	0	Parent=Os02t0685600-01
Chr02	irgsp1_rep	CDS	28079178	28079429	.	-	0	Parent=Os02t0685600-01
Chr02	irgsp1_rep	three_prime_UTR	28079035	28079177	.	-	.	Parent=Os02t0685600-01
Chr02	irgsp1_rep	mRNA	28086571	28092008	.	-	.	ID=Os02t0685750-01;Name=Os02t0685750-01;Locus_id=Os02g0685750;Note=Hypothetical gene.;Transcript_evidence=AK289237 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100074I15;TENOR=Os02t0685750-01
Chr02	irgsp1_rep	five_prime_UTR	28091706	28092008	.	-	.	Parent=Os02t0685750-01
Chr02	irgsp1_rep	five_prime_UTR	28090299	28090523	.	-	.	Parent=Os02t0685750-01
Chr02	irgsp1_rep	five_prime_UTR	28089326	28089493	.	-	.	Parent=Os02t0685750-01
Chr02	irgsp1_rep	five_prime_UTR	28088925	28089040	.	-	.	Parent=Os02t0685750-01
Chr02	irgsp1_rep	five_prime_UTR	28088590	28088742	.	-	.	Parent=Os02t0685750-01
Chr02	irgsp1_rep	five_prime_UTR	28088351	28088494	.	-	.	Parent=Os02t0685750-01
Chr02	irgsp1_rep	five_prime_UTR	28087371	28087467	.	-	.	Parent=Os02t0685750-01
Chr02	irgsp1_rep	CDS	28086571	28087370	.	-	0	Parent=Os02t0685750-01
Chr02	irgsp1_rep	mRNA	28086317	28089209	.	-	.	ID=Os02t0685750-02;Name=Os02t0685750-02;Locus_id=Os02g0685750;Note=Hypothetical gene.;Transcript_evidence=AK289012 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090089H03;TENOR=Os02t0685750-02;KEGG=Os02t0685750-02
Chr02	irgsp1_rep	five_prime_UTR	28087371	28089209	.	-	.	Parent=Os02t0685750-02
Chr02	irgsp1_rep	CDS	28086540	28087370	.	-	0	Parent=Os02t0685750-02
Chr02	irgsp1_rep	three_prime_UTR	28086317	28086539	.	-	.	Parent=Os02t0685750-02
Chr02	irgsp1_rep	mRNA	28086490	28092092	.	+	.	ID=Os02t0685900-00;Name=Os02t0685900-00;Locus_id=Os02g0685900;CGSNL Gene Symbol=CDPK5;CGSNL Gene Name=CALCIUM-DEPENDENT PROTEIN KINASE 5;Oryzabase Gene Symbol Synonym(s)=OsCDPK5%2C OsCPK5;Oryzabase Gene Name Synonym(s)=calcium-dependent protein kinase;Note=Similar to Calcium dependent protein kinase.;Transcript_evidence=CT837909 (DDBJ%2C Best hit);ORF_evidence=B2KTA0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Calcium-binding EF-hand (IPR002048),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),EF-hand-like domain (IPR011992),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);Oryzabase=8059;TENOR=Os02t0685900-00;KEGG=Os02t0685900-00 (EC:2.7.11.17)
Chr02	irgsp1_rep	five_prime_UTR	28086490	28086728	.	+	.	Parent=Os02t0685900-00
Chr02	irgsp1_rep	CDS	28086729	28087467	.	+	0	Parent=Os02t0685900-00
Chr02	irgsp1_rep	CDS	28088351	28088494	.	+	2	Parent=Os02t0685900-00
Chr02	irgsp1_rep	CDS	28088590	28088742	.	+	2	Parent=Os02t0685900-00
Chr02	irgsp1_rep	CDS	28088925	28089040	.	+	2	Parent=Os02t0685900-00
Chr02	irgsp1_rep	CDS	28089326	28089493	.	+	0	Parent=Os02t0685900-00
Chr02	irgsp1_rep	CDS	28090299	28090523	.	+	0	Parent=Os02t0685900-00
Chr02	irgsp1_rep	CDS	28091706	28091810	.	+	0	Parent=Os02t0685900-00
Chr02	irgsp1_rep	three_prime_UTR	28091811	28092092	.	+	.	Parent=Os02t0685900-00
Chr02	irgsp1_rep	mRNA	28096979	28098029	.	-	.	ID=Os02t0686100-00;Name=Os02t0686100-00;Locus_id=Os02g0686100;Note=Similar to RING-H2 finger protein ATL1B.;Transcript_evidence=CT835380 (DDBJ%2C Best hit);ORF_evidence=NP_001147382.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os02t0686100-00;KEGG=Os02t0686100-00
Chr02	irgsp1_rep	five_prime_UTR	28097912	28098029	.	-	.	Parent=Os02t0686100-00
Chr02	irgsp1_rep	CDS	28097342	28097911	.	-	0	Parent=Os02t0686100-00
Chr02	irgsp1_rep	three_prime_UTR	28096979	28097341	.	-	.	Parent=Os02t0686100-00
Chr02	irgsp1_rep	mRNA	28108634	28113427	.	-	.	ID=Os02t0686300-01;Name=Os02t0686300-01;Locus_id=Os02g0686300;Note=Similar to H0307D04.3 protein.;Transcript_evidence=AK066567 (DDBJ%2C Best hit);ORF_evidence=Q01K63 (UniProt);InterPro=Nucleotide-diphospho-sugar transferase (IPR005069);NIAS_FLcDNA=J013073J20;Expression=AK066567;TENOR=Os02t0686300-01;KEGG=Os02t0686300-01
Chr02	irgsp1_rep	five_prime_UTR	28113276	28113427	.	-	.	Parent=Os02t0686300-01
Chr02	irgsp1_rep	CDS	28112964	28113275	.	-	0	Parent=Os02t0686300-01
Chr02	irgsp1_rep	CDS	28111992	28112357	.	-	0	Parent=Os02t0686300-01
Chr02	irgsp1_rep	CDS	28111353	28111834	.	-	0	Parent=Os02t0686300-01
Chr02	irgsp1_rep	CDS	28111188	28111209	.	-	1	Parent=Os02t0686300-01
Chr02	irgsp1_rep	three_prime_UTR	28111099	28111187	.	-	.	Parent=Os02t0686300-01
Chr02	irgsp1_rep	three_prime_UTR	28108634	28110814	.	-	.	Parent=Os02t0686300-01
Chr02	irgsp1_rep	mRNA	28113631	28118698	.	+	.	ID=Os02t0686400-01;Name=Os02t0686400-01;Locus_id=Os02g0686400;Note=Similar to Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA ligase) (AspRS).;Transcript_evidence=AK119608 (DDBJ%2C Best hit);ORF_evidence=B6TIG4 (UniProt);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: aspartyl-tRNA aminoacylation (GO:0006422),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: aspartate-tRNA ligase activity (GO:0004815),Molecular Function: ATP binding (GO:0005524);InterPro=Aspartyl/Asparaginyl-tRNA synthetase%2C class IIb (IPR002312),Aminoacyl-tRNA synthetase%2C class II (D/K/N) (IPR004364),Nucleic acid binding%2C OB-fold%2C tRNA/helicase-type (IPR004365),Aspartyl-tRNA synthetase%2C class IIb%2C archea/euk type (IPR004523),Aminoacyl-tRNA synthetase%2C class II (IPR006195),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),Aminoacyl-tRNA synthetase%2C class II (D/K/N)-like (IPR018150);NIAS_FLcDNA=002-117-F07;Expression=AK119608;TENOR=Os02t0686400-01;KEGG=Os02t0686400-01 (EC:6.1.1.12)
Chr02	irgsp1_rep	five_prime_UTR	28113631	28113854	.	+	.	Parent=Os02t0686400-01
Chr02	irgsp1_rep	CDS	28113855	28114385	.	+	0	Parent=Os02t0686400-01
Chr02	irgsp1_rep	CDS	28114763	28114873	.	+	0	Parent=Os02t0686400-01
Chr02	irgsp1_rep	CDS	28114984	28115097	.	+	0	Parent=Os02t0686400-01
Chr02	irgsp1_rep	CDS	28115584	28115874	.	+	0	Parent=Os02t0686400-01
Chr02	irgsp1_rep	CDS	28115954	28116064	.	+	0	Parent=Os02t0686400-01
Chr02	irgsp1_rep	CDS	28116165	28116218	.	+	0	Parent=Os02t0686400-01
Chr02	irgsp1_rep	CDS	28117094	28117173	.	+	0	Parent=Os02t0686400-01
Chr02	irgsp1_rep	CDS	28117256	28117371	.	+	1	Parent=Os02t0686400-01
Chr02	irgsp1_rep	CDS	28117998	28118112	.	+	2	Parent=Os02t0686400-01
Chr02	irgsp1_rep	CDS	28118247	28118373	.	+	1	Parent=Os02t0686400-01
Chr02	irgsp1_rep	three_prime_UTR	28118374	28118698	.	+	.	Parent=Os02t0686400-01
Chr02	irgsp1_rep	mRNA	28113691	28118720	.	+	.	ID=Os02t0686400-02;Name=Os02t0686400-02;Locus_id=Os02g0686400;Note=Similar to Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA ligase) (AspRS).;Transcript_evidence=AK068513 (DDBJ%2C Best hit),AK098984 (DDBJ%2C Best hit);ORF_evidence=B6TIG4 (UniProt);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: aspartyl-tRNA aminoacylation (GO:0006422),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: aspartate-tRNA ligase activity (GO:0004815),Molecular Function: ATP binding (GO:0005524);InterPro=Aspartyl/Asparaginyl-tRNA synthetase%2C class IIb (IPR002312),Aminoacyl-tRNA synthetase%2C class II (D/K/N) (IPR004364),Nucleic acid binding%2C OB-fold%2C tRNA/helicase-type (IPR004365),Aspartyl-tRNA synthetase%2C class IIb%2C archea/euk type (IPR004523),Aminoacyl-tRNA synthetase%2C class II (IPR006195),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),Aminoacyl-tRNA synthetase%2C class II (D/K/N)-like (IPR018150);NIAS_FLcDNA=J013154D06,J013093E04;TENOR=Os02t0686400-02
Chr02	irgsp1_rep	five_prime_UTR	28113691	28113854	.	+	.	Parent=Os02t0686400-02
Chr02	irgsp1_rep	CDS	28113855	28114385	.	+	0	Parent=Os02t0686400-02
Chr02	irgsp1_rep	CDS	28114763	28114873	.	+	0	Parent=Os02t0686400-02
Chr02	irgsp1_rep	CDS	28114984	28115097	.	+	0	Parent=Os02t0686400-02
Chr02	irgsp1_rep	CDS	28115584	28115874	.	+	0	Parent=Os02t0686400-02
Chr02	irgsp1_rep	CDS	28115954	28116064	.	+	0	Parent=Os02t0686400-02
Chr02	irgsp1_rep	CDS	28116165	28116218	.	+	0	Parent=Os02t0686400-02
Chr02	irgsp1_rep	CDS	28117094	28117173	.	+	0	Parent=Os02t0686400-02
Chr02	irgsp1_rep	CDS	28117256	28117371	.	+	1	Parent=Os02t0686400-02
Chr02	irgsp1_rep	CDS	28117998	28118112	.	+	2	Parent=Os02t0686400-02
Chr02	irgsp1_rep	CDS	28118247	28118373	.	+	1	Parent=Os02t0686400-02
Chr02	irgsp1_rep	three_prime_UTR	28118374	28118720	.	+	.	Parent=Os02t0686400-02
Chr02	irgsp1_rep	mRNA	28114005	28118374	.	-	.	ID=Os02t0686450-00;Name=Os02t0686450-00;Locus_id=Os02g0686450;Note=Non-protein coding transcript.;Transcript_evidence=tplb0049h17 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os02t0686450-00
Chr02	irgsp1_rep	exon	28118218	28118374	.	-	.	Parent=Os02t0686450-00
Chr02	irgsp1_rep	exon	28117979	28118084	.	-	.	Parent=Os02t0686450-00
Chr02	irgsp1_rep	exon	28117245	28117350	.	-	.	Parent=Os02t0686450-00
Chr02	irgsp1_rep	exon	28117105	28117159	.	-	.	Parent=Os02t0686450-00
Chr02	irgsp1_rep	exon	28116163	28116226	.	-	.	Parent=Os02t0686450-00
Chr02	irgsp1_rep	exon	28115952	28116058	.	-	.	Parent=Os02t0686450-00
Chr02	irgsp1_rep	exon	28115584	28115872	.	-	.	Parent=Os02t0686450-00
Chr02	irgsp1_rep	exon	28114954	28115097	.	-	.	Parent=Os02t0686450-00
Chr02	irgsp1_rep	exon	28114754	28114850	.	-	.	Parent=Os02t0686450-00
Chr02	irgsp1_rep	exon	28114005	28114379	.	-	.	Parent=Os02t0686450-00
Chr02	irgsp1_rep	mRNA	28122365	28123818	.	+	.	ID=Os02t0686500-01;Name=Os02t0686500-01;Locus_id=Os02g0686500;Oryzabase Gene Symbol Synonym(s)=Os_F0138;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK073456 (DDBJ%2C Best hit);ORF_evidence=A3AA79 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033042O07;Oryzabase=17442;TENOR=Os02t0686500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	28122365	28122581	.	+	.	Parent=Os02t0686500-01
Chr02	irgsp1_rep	CDS	28122582	28122660	.	+	0	Parent=Os02t0686500-01
Chr02	irgsp1_rep	CDS	28122848	28123011	.	+	2	Parent=Os02t0686500-01
Chr02	irgsp1_rep	three_prime_UTR	28123012	28123818	.	+	.	Parent=Os02t0686500-01
Chr02	irgsp1_rep	mRNA	28123691	28128078	.	-	.	ID=Os02t0686600-01;Name=Os02t0686600-01;Locus_id=Os02g0686600;Note=Metal-dependent protein hydrolase family protein.;Transcript_evidence=AK102917 (DDBJ%2C Best hit);ORF_evidence=XP_001702449.1 (RefSeq);InterPro=Metal-dependent protein hydrolase (IPR003226);NIAS_FLcDNA=J033114A13;Expression=AK102917;TENOR=Os02t0686600-01;KEGG=Os02t0686600-01
Chr02	irgsp1_rep	five_prime_UTR	28128021	28128078	.	-	.	Parent=Os02t0686600-01
Chr02	irgsp1_rep	CDS	28127817	28128020	.	-	0	Parent=Os02t0686600-01
Chr02	irgsp1_rep	CDS	28126955	28127101	.	-	0	Parent=Os02t0686600-01
Chr02	irgsp1_rep	CDS	28126426	28126524	.	-	0	Parent=Os02t0686600-01
Chr02	irgsp1_rep	CDS	28124990	28125181	.	-	0	Parent=Os02t0686600-01
Chr02	irgsp1_rep	CDS	28124759	28124878	.	-	0	Parent=Os02t0686600-01
Chr02	irgsp1_rep	CDS	28124594	28124665	.	-	0	Parent=Os02t0686600-01
Chr02	irgsp1_rep	CDS	28123941	28124165	.	-	0	Parent=Os02t0686600-01
Chr02	irgsp1_rep	three_prime_UTR	28123691	28123940	.	-	.	Parent=Os02t0686600-01
Chr02	irgsp1_rep	mRNA	28132758	28133637	.	-	.	ID=Os02t0686700-01;Name=Os02t0686700-01;Locus_id=Os02g0686700;Note=Protein of unknown function DUF581 family protein.;Transcript_evidence=AK111294 (DDBJ%2C Best hit);ORF_evidence=Q01K61 (UniProt);InterPro=Protein of unknown function DUF581 (IPR007650);NIAS_FLcDNA=002-181-A08;Expression=AK111294;TENOR=Os02t0686700-01;KEGG=Os02t0686700-01
Chr02	irgsp1_rep	five_prime_UTR	28133384	28133637	.	-	.	Parent=Os02t0686700-01
Chr02	irgsp1_rep	CDS	28133295	28133383	.	-	0	Parent=Os02t0686700-01
Chr02	irgsp1_rep	CDS	28132995	28133184	.	-	1	Parent=Os02t0686700-01
Chr02	irgsp1_rep	three_prime_UTR	28132758	28132994	.	-	.	Parent=Os02t0686700-01
Chr02	irgsp1_rep	mRNA	28136347	28137459	.	-	.	ID=Os02t0686800-01;Name=Os02t0686800-01;Locus_id=Os02g0686800;Note=Protein of unknown function DUF581 family protein.;Transcript_evidence=AK071055 (DDBJ%2C Best hit);ORF_evidence=Q01K60 (UniProt);InterPro=Protein of unknown function DUF581 (IPR007650);NIAS_FLcDNA=J023077C02;Expression=AK071055;TENOR=Os02t0686800-01;KEGG=Os02t0686800-01
Chr02	irgsp1_rep	five_prime_UTR	28137300	28137459	.	-	.	Parent=Os02t0686800-01
Chr02	irgsp1_rep	CDS	28137025	28137299	.	-	0	Parent=Os02t0686800-01
Chr02	irgsp1_rep	CDS	28136779	28136944	.	-	1	Parent=Os02t0686800-01
Chr02	irgsp1_rep	three_prime_UTR	28136347	28136778	.	-	.	Parent=Os02t0686800-01
Chr02	irgsp1_rep	mRNA	28153289	28154410	.	-	.	ID=Os02t0687200-01;Name=Os02t0687200-01;Locus_id=Os02g0687200;Note=Protein of unknown function DUF581 family protein.;Transcript_evidence=AK059947 (DDBJ%2C Best hit);ORF_evidence=Q01K53 (UniProt);InterPro=Protein of unknown function DUF581 (IPR007650);NIAS_FLcDNA=006-210-H10;Expression=AK059947;TENOR=Os02t0687200-01;KEGG=Os02t0687200-01
Chr02	irgsp1_rep	five_prime_UTR	28154325	28154410	.	-	.	Parent=Os02t0687200-01
Chr02	irgsp1_rep	CDS	28154179	28154324	.	-	0	Parent=Os02t0687200-01
Chr02	irgsp1_rep	CDS	28153854	28154028	.	-	1	Parent=Os02t0687200-01
Chr02	irgsp1_rep	three_prime_UTR	28153289	28153853	.	-	.	Parent=Os02t0687200-01
Chr02	irgsp1_rep	mRNA	28160301	28161779	.	-	.	ID=Os02t0687500-01;Name=Os02t0687500-01;Locus_id=Os02g0687500;Note=Similar to S-ribonuclease binding protein SBP1.;Transcript_evidence=AK240994 (DDBJ%2C Best hit);ORF_evidence=NP_001146990.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),S-ribonuclease binding protein%2C SBP1%2C pollen (IPR017066);NIAS_FLcDNA=J065052K07;TENOR=Os02t0687500-01;KEGG=Os02t0687500-01
Chr02	irgsp1_rep	five_prime_UTR	28161753	28161779	.	-	.	Parent=Os02t0687500-01
Chr02	irgsp1_rep	CDS	28161686	28161752	.	-	0	Parent=Os02t0687500-01
Chr02	irgsp1_rep	CDS	28161181	28161548	.	-	2	Parent=Os02t0687500-01
Chr02	irgsp1_rep	CDS	28160570	28161091	.	-	0	Parent=Os02t0687500-01
Chr02	irgsp1_rep	three_prime_UTR	28160301	28160569	.	-	.	Parent=Os02t0687500-01
Chr02	irgsp1_rep	mRNA	28174101	28175352	.	-	.	ID=Os02t0687550-00;Name=Os02t0687550-00;Locus_id=Os02g0687550;Note=Hypothetical gene.;Transcript_evidence=CT835388 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os02t0687550-00;KEGG=Os02t0687550-00
Chr02	irgsp1_rep	five_prime_UTR	28175231	28175352	.	-	.	Parent=Os02t0687550-00
Chr02	irgsp1_rep	CDS	28174946	28175230	.	-	0	Parent=Os02t0687550-00
Chr02	irgsp1_rep	three_prime_UTR	28174101	28174945	.	-	.	Parent=Os02t0687550-00
Chr02	irgsp1_rep	mRNA	28175466	28180071	.	-	.	ID=Os02t0687600-01;Name=Os02t0687600-01;Locus_id=Os02g0687600;Note=Hypothetical protein.;Transcript_evidence=AK100994 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023146H10;TENOR=Os02t0687600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	28178755	28180071	.	-	.	Parent=Os02t0687600-01
Chr02	irgsp1_rep	CDS	28178539	28178754	.	-	0	Parent=Os02t0687600-01
Chr02	irgsp1_rep	three_prime_UTR	28175466	28178538	.	-	.	Parent=Os02t0687600-01
Chr02	irgsp1_rep	mRNA	28212163	28216943	.	+	.	ID=Os02t0687900-01;Name=Os02t0687900-01;Locus_id=Os02g0687900;CGSNL Gene Symbol=SCP9;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 9;Oryzabase Gene Symbol Synonym(s)=OsSCP9;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 9;Note=Peptidase S10%2C serine carboxypeptidase family protein.;Transcript_evidence=AK064814 (DDBJ%2C Best hit);ORF_evidence=NP_001149249.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563);NIAS_FLcDNA=J013000E09;Oryzabase=19193;Expression=AK064814;TENOR=Os02t0687900-01;KEGG=Os02t0687900-01 (EC:3.4.16.5)
Chr02	irgsp1_rep	five_prime_UTR	28212163	28212201	.	+	.	Parent=Os02t0687900-01
Chr02	irgsp1_rep	CDS	28212202	28212389	.	+	0	Parent=Os02t0687900-01
Chr02	irgsp1_rep	CDS	28212505	28212650	.	+	1	Parent=Os02t0687900-01
Chr02	irgsp1_rep	CDS	28212771	28212850	.	+	2	Parent=Os02t0687900-01
Chr02	irgsp1_rep	CDS	28213113	28213235	.	+	0	Parent=Os02t0687900-01
Chr02	irgsp1_rep	CDS	28213312	28213414	.	+	0	Parent=Os02t0687900-01
Chr02	irgsp1_rep	CDS	28214694	28214731	.	+	2	Parent=Os02t0687900-01
Chr02	irgsp1_rep	CDS	28214824	28214925	.	+	0	Parent=Os02t0687900-01
Chr02	irgsp1_rep	CDS	28215025	28215105	.	+	0	Parent=Os02t0687900-01
Chr02	irgsp1_rep	CDS	28215249	28215395	.	+	0	Parent=Os02t0687900-01
Chr02	irgsp1_rep	CDS	28215518	28215589	.	+	0	Parent=Os02t0687900-01
Chr02	irgsp1_rep	CDS	28215894	28216012	.	+	0	Parent=Os02t0687900-01
Chr02	irgsp1_rep	CDS	28216133	28216251	.	+	1	Parent=Os02t0687900-01
Chr02	irgsp1_rep	CDS	28216501	28216529	.	+	2	Parent=Os02t0687900-01
Chr02	irgsp1_rep	three_prime_UTR	28216530	28216546	.	+	.	Parent=Os02t0687900-01
Chr02	irgsp1_rep	three_prime_UTR	28216676	28216943	.	+	.	Parent=Os02t0687900-01
Chr02	irgsp1_rep	mRNA	28212261	28216552	.	-	.	ID=Os02t0688000-00;Name=Os02t0688000-00;Locus_id=Os02g0688000;Note=Hypothetical protein.;Transcript_evidence=tplb0035f04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0688000-00
Chr02	irgsp1_rep	five_prime_UTR	28216424	28216552	.	-	.	Parent=Os02t0688000-00
Chr02	irgsp1_rep	five_prime_UTR	28215883	28216290	.	-	.	Parent=Os02t0688000-00
Chr02	irgsp1_rep	five_prime_UTR	28214510	28215699	.	-	.	Parent=Os02t0688000-00
Chr02	irgsp1_rep	five_prime_UTR	28213707	28213900	.	-	.	Parent=Os02t0688000-00
Chr02	irgsp1_rep	five_prime_UTR	28213336	28213526	.	-	.	Parent=Os02t0688000-00
Chr02	irgsp1_rep	five_prime_UTR	28213064	28213251	.	-	.	Parent=Os02t0688000-00
Chr02	irgsp1_rep	five_prime_UTR	28212668	28212673	.	-	.	Parent=Os02t0688000-00
Chr02	irgsp1_rep	CDS	28212338	28212667	.	-	0	Parent=Os02t0688000-00
Chr02	irgsp1_rep	three_prime_UTR	28212261	28212337	.	-	.	Parent=Os02t0688000-00
Chr02	irgsp1_rep	mRNA	28224980	28226107	.	+	.	ID=Os02t0688200-00;Name=Os02t0688200-00;Locus_id=Os02g0688200;Note=Similar to Pectinesterase.;Transcript_evidence=ab initio prediction;ORF_evidence=A3AA89 (UniProt);GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);TENOR=Os02t0688200-00
Chr02	irgsp1_rep	CDS	28224980	28225468	.	+	0	Parent=Os02t0688200-00
Chr02	irgsp1_rep	CDS	28225931	28226107	.	+	0	Parent=Os02t0688200-00
Chr02	irgsp1_rep	mRNA	28233670	28236744	.	+	.	ID=Os02t0688500-01;Name=Os02t0688500-01;Locus_id=Os02g0688500;Note=Glycosyltransferase%2C ALG6/ALG8 domain containing protein.;Transcript_evidence=AK102212 (DDBJ%2C Best hit);ORF_evidence=NP_181994.5 (RefSeq);GO=Cellular Component: endoplasmic reticulum membrane (GO:0005789),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=Glycosyl transferase%2C ALG6/ALG8 (IPR004856);NIAS_FLcDNA=J033087J03;Expression=AK102212;TENOR=Os02t0688500-01;KEGG=Os02t0688500-01 (EC:2.4.1.-)
Chr02	irgsp1_rep	CDS	28233670	28234404	.	+	0	Parent=Os02t0688500-01
Chr02	irgsp1_rep	CDS	28234678	28234884	.	+	0	Parent=Os02t0688500-01
Chr02	irgsp1_rep	CDS	28234980	28235217	.	+	0	Parent=Os02t0688500-01
Chr02	irgsp1_rep	CDS	28236360	28236727	.	+	2	Parent=Os02t0688500-01
Chr02	irgsp1_rep	three_prime_UTR	28236728	28236744	.	+	.	Parent=Os02t0688500-01
Chr02	irgsp1_rep	mRNA	28236388	28236790	.	+	.	ID=Os02t0688500-02;Name=Os02t0688500-02;Locus_id=Os02g0688500;Note=Hypothetical conserved gene.;Transcript_evidence=AK059118 (DDBJ%2C Best hit);ORF_evidence=Q6ZGZ7 (UniProt);GO=Cellular Component: endoplasmic reticulum membrane (GO:0005789),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=Glycosyl transferase%2C ALG6/ALG8 (IPR004856);NIAS_FLcDNA=001-022-E11;Expression=AK059118;TENOR=Os02t0688500-02;KEGG=Os02t0688500-02 (EC:2.4.1.-)
Chr02	irgsp1_rep	five_prime_UTR	28236388	28236388	.	+	.	Parent=Os02t0688500-02
Chr02	irgsp1_rep	CDS	28236389	28236727	.	+	0	Parent=Os02t0688500-02
Chr02	irgsp1_rep	three_prime_UTR	28236728	28236790	.	+	.	Parent=Os02t0688500-02
Chr02	irgsp1_rep	mRNA	28247512	28247668	.	+	.	ID=Os02t0688800-00;Name=Os02t0688800-00;Locus_id=Os02g0688800;Note=Non-protein coding transcript.;Transcript_evidence=CT835447 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os02t0688800-00
Chr02	irgsp1_rep	exon	28247512	28247668	.	+	.	Parent=Os02t0688800-00
Chr02	irgsp1_rep	mRNA	28252672	28256859	.	-	.	ID=Os02t0688900-01;Name=Os02t0688900-01;Locus_id=Os02g0688900;Note=GPI transamidase subunit PIG-U family protein.;Transcript_evidence=AK066093 (DDBJ%2C Best hit);ORF_evidence=NP_001148568.1 (RefSeq);GO=Biological Process: GPI anchor biosynthetic process (GO:0006506),Cellular Component: endoplasmic reticulum membrane (GO:0005789),Cellular Component: integral to membrane (GO:0016021);InterPro=GPI transamidase subunit PIG-U (IPR009600);NIAS_FLcDNA=J013059O06;Expression=AK066093;TENOR=Os02t0688900-01;KEGG=Os02t0688900-01
Chr02	irgsp1_rep	five_prime_UTR	28256831	28256859	.	-	.	Parent=Os02t0688900-01
Chr02	irgsp1_rep	CDS	28256698	28256830	.	-	0	Parent=Os02t0688900-01
Chr02	irgsp1_rep	CDS	28256548	28256595	.	-	2	Parent=Os02t0688900-01
Chr02	irgsp1_rep	CDS	28256108	28256168	.	-	2	Parent=Os02t0688900-01
Chr02	irgsp1_rep	CDS	28255929	28255961	.	-	1	Parent=Os02t0688900-01
Chr02	irgsp1_rep	CDS	28255546	28255670	.	-	1	Parent=Os02t0688900-01
Chr02	irgsp1_rep	CDS	28254941	28255075	.	-	2	Parent=Os02t0688900-01
Chr02	irgsp1_rep	CDS	28254655	28254731	.	-	2	Parent=Os02t0688900-01
Chr02	irgsp1_rep	CDS	28254306	28254553	.	-	0	Parent=Os02t0688900-01
Chr02	irgsp1_rep	CDS	28253921	28253977	.	-	1	Parent=Os02t0688900-01
Chr02	irgsp1_rep	CDS	28253683	28253851	.	-	1	Parent=Os02t0688900-01
Chr02	irgsp1_rep	CDS	28253489	28253546	.	-	0	Parent=Os02t0688900-01
Chr02	irgsp1_rep	CDS	28253296	28253381	.	-	2	Parent=Os02t0688900-01
Chr02	irgsp1_rep	CDS	28253167	28253223	.	-	0	Parent=Os02t0688900-01
Chr02	irgsp1_rep	CDS	28252892	28252966	.	-	0	Parent=Os02t0688900-01
Chr02	irgsp1_rep	three_prime_UTR	28252672	28252891	.	-	.	Parent=Os02t0688900-01
Chr02	irgsp1_rep	mRNA	28258277	28259364	.	+	.	ID=Os02t0689000-01;Name=Os02t0689000-01;Locus_id=Os02g0689000;Note=Pectinesterase inhibitor domain containing protein.;Transcript_evidence=AK109306 (DDBJ%2C Best hit);ORF_evidence=NP_001151081.1 (RefSeq);GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);NIAS_FLcDNA=002-188-E05;Expression=AK109306;TENOR=Os02t0689000-01;KEGG=Os02t0689000-01
Chr02	irgsp1_rep	five_prime_UTR	28258277	28258410	.	+	.	Parent=Os02t0689000-01
Chr02	irgsp1_rep	CDS	28258411	28258974	.	+	0	Parent=Os02t0689000-01
Chr02	irgsp1_rep	three_prime_UTR	28258975	28259364	.	+	.	Parent=Os02t0689000-01
Chr02	irgsp1_rep	mRNA	28258417	28262761	.	-	.	ID=Os02t0689066-00;Name=Os02t0689066-00;Locus_id=Os02g0689066;Note=Conserved hypothetical protein.;Transcript_evidence=AK363229 (DDBJ);ORF_evidence=NP_001065513.1 (RefSeq);TENOR=Os02t0689066-00
Chr02	irgsp1_rep	five_prime_UTR	28262580	28262761	.	-	.	Parent=Os02t0689066-00
Chr02	irgsp1_rep	CDS	28262376	28262579	.	-	0	Parent=Os02t0689066-00
Chr02	irgsp1_rep	three_prime_UTR	28262086	28262375	.	-	.	Parent=Os02t0689066-00
Chr02	irgsp1_rep	three_prime_UTR	28258417	28258872	.	-	.	Parent=Os02t0689066-00
Chr02	irgsp1_rep	mRNA	28261521	28262054	.	-	.	ID=Os02t0689132-00;Name=Os02t0689132-00;Locus_id=Os02g0689132;Note=Similar to EIL transcription factor.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8W3L9 (UniProt);GO=Cellular Component: nucleus (GO:0005634);InterPro=Ethylene insensitive 3 (IPR006957);TENOR=Os02t0689132-00
Chr02	irgsp1_rep	CDS	28261521	28262054	.	-	0	Parent=Os02t0689132-00
Chr02	irgsp1_rep	mRNA	28266569	28269611	.	+	.	ID=Os02t0689200-01;Name=Os02t0689200-01;Locus_id=Os02g0689200;CGSNL Gene Symbol=PUP11;CGSNL Gene Name=PURINE PERMEASE 11;Oryzabase Gene Symbol Synonym(s)=OsPUP11;Oryzabase Gene Name Synonym(s)=purine permease 11%2C PUP-type cytokinin transporter 11;Note=Protein of unknown function DUF250 domain containing protein.;Transcript_evidence=AK072660 (DDBJ%2C Best hit);ORF_evidence=A3AA95 (UniProt);InterPro=Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=J023134O11;Oryzabase=15011;Expression=AK072660;TENOR=Os02t0689200-01;KEGG=Os02t0689200-01
Chr02	irgsp1_rep	five_prime_UTR	28266569	28266842	.	+	.	Parent=Os02t0689200-01
Chr02	irgsp1_rep	CDS	28266843	28266903	.	+	0	Parent=Os02t0689200-01
Chr02	irgsp1_rep	CDS	28268332	28269419	.	+	2	Parent=Os02t0689200-01
Chr02	irgsp1_rep	three_prime_UTR	28269420	28269611	.	+	.	Parent=Os02t0689200-01
Chr02	irgsp1_rep	mRNA	28266581	28268719	.	+	.	ID=Os02t0689200-02;Name=Os02t0689200-02;Locus_id=Os02g0689200;CGSNL Gene Symbol=PUP11;CGSNL Gene Name=PURINE PERMEASE 11;Oryzabase Gene Symbol Synonym(s)=OsPUP11;Oryzabase Gene Name Synonym(s)=purine permease 11%2C PUP-type cytokinin transporter 11;Note=Similar to cDNA clone:J023134O11%2C full insert sequence.;Transcript_evidence=AK065336 (DDBJ%2C Best hit);ORF_evidence=B7EL40 (UniProt);NIAS_FLcDNA=J013000O22;Oryzabase=15011;TENOR=Os02t0689200-02
Chr02	irgsp1_rep	five_prime_UTR	28266581	28268411	.	+	.	Parent=Os02t0689200-02
Chr02	irgsp1_rep	CDS	28268412	28268719	.	+	0	Parent=Os02t0689200-02
Chr02	irgsp1_rep	mRNA	28267390	28269626	.	+	.	ID=Os02t0689200-03;Name=Os02t0689200-03;Locus_id=Os02g0689200;CGSNL Gene Symbol=PUP11;CGSNL Gene Name=PURINE PERMEASE 11;Oryzabase Gene Symbol Synonym(s)=OsPUP11;Oryzabase Gene Name Synonym(s)=purine permease 11%2C PUP-type cytokinin transporter 11;Note=Similar to cDNA clone:J023134O11%2C full insert sequence.;Transcript_evidence=AK071254 (DDBJ%2C Best hit);ORF_evidence=B7EL40 (UniProt);InterPro=Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=J023087G23;Oryzabase=15011;Expression=AK071254;TENOR=Os02t0689200-03;KEGG=Os02t0689200-03
Chr02	irgsp1_rep	five_prime_UTR	28267390	28267500	.	+	.	Parent=Os02t0689200-03
Chr02	irgsp1_rep	CDS	28267501	28267570	.	+	0	Parent=Os02t0689200-03
Chr02	irgsp1_rep	CDS	28268332	28269419	.	+	2	Parent=Os02t0689200-03
Chr02	irgsp1_rep	three_prime_UTR	28269420	28269626	.	+	.	Parent=Os02t0689200-03
Chr02	irgsp1_rep	mRNA	28278323	28279870	.	-	.	ID=Os02t0689500-01;Name=Os02t0689500-01;Locus_id=Os02g0689500;Note=Similar to transposon protein.;Transcript_evidence=AK072685 (DDBJ%2C Best hit);ORF_evidence=NP_001151177.1 (RefSeq);InterPro=Uncharacterised protein family UPF0503 (IPR008004);NIAS_FLcDNA=J023143J01;Expression=AK072685;TENOR=Os02t0689500-01;KEGG=Os02t0689500-01
Chr02	irgsp1_rep	five_prime_UTR	28279675	28279870	.	-	.	Parent=Os02t0689500-01
Chr02	irgsp1_rep	CDS	28278802	28279674	.	-	0	Parent=Os02t0689500-01
Chr02	irgsp1_rep	three_prime_UTR	28278323	28278801	.	-	.	Parent=Os02t0689500-01
Chr02	irgsp1_rep	mRNA	28278624	28279963	.	+	.	ID=Os02t0689550-00;Name=Os02t0689550-00;Locus_id=Os02g0689550;Note=Hypothetical protein.;Transcript_evidence=tplb0058j15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0689550-00
Chr02	irgsp1_rep	five_prime_UTR	28278624	28279296	.	+	.	Parent=Os02t0689550-00
Chr02	irgsp1_rep	CDS	28279297	28279815	.	+	0	Parent=Os02t0689550-00
Chr02	irgsp1_rep	three_prime_UTR	28279816	28279963	.	+	.	Parent=Os02t0689550-00
Chr02	irgsp1_rep	mRNA	28289304	28290298	.	+	.	ID=Os02t0689600-00;Name=Os02t0689600-00;Locus_id=Os02g0689600;Note=Domain of unknown function DUF828 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=XP_002454453.1 (RefSeq);InterPro=Domain of unknown function DUF828 (IPR008546),Pleckstrin-like%2C plant (IPR013666);TENOR=Os02t0689600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	28289304	28289550	.	+	0	Parent=Os02t0689600-00
Chr02	irgsp1_rep	CDS	28289636	28289749	.	+	2	Parent=Os02t0689600-00
Chr02	irgsp1_rep	CDS	28289866	28289961	.	+	2	Parent=Os02t0689600-00
Chr02	irgsp1_rep	CDS	28290105	28290298	.	+	2	Parent=Os02t0689600-00
Chr02	irgsp1_rep	mRNA	28289828	28291677	.	-	.	ID=Os02t0689700-01;Name=Os02t0689700-01;Locus_id=Os02g0689700;Note=Ribosomal protein L18P/L5E family protein.;Transcript_evidence=AK072634 (DDBJ%2C Best hit);ORF_evidence=NP_001150881.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L18/L5 (IPR005484);NIAS_FLcDNA=J023132I06;Expression=AK072634;TENOR=Os02t0689700-01;KEGG=Os02t0689700-01
Chr02	irgsp1_rep	five_prime_UTR	28291640	28291677	.	-	.	Parent=Os02t0689700-01
Chr02	irgsp1_rep	CDS	28291094	28291639	.	-	0	Parent=Os02t0689700-01
Chr02	irgsp1_rep	three_prime_UTR	28291064	28291093	.	-	.	Parent=Os02t0689700-01
Chr02	irgsp1_rep	three_prime_UTR	28289828	28290191	.	-	.	Parent=Os02t0689700-01
Chr02	irgsp1_rep	mRNA	28289765	28291272	.	-	.	ID=Os02t0689700-02;Name=Os02t0689700-02;Locus_id=Os02g0689700;Note=Ribosomal protein L18P/L5E family protein.;Transcript_evidence=AK063776 (DDBJ%2C Best hit);ORF_evidence=NP_001150881.1 (RefSeq);NIAS_FLcDNA=001-121-D02;Expression=AK063776;TENOR=Os02t0689700-02;KEGG=Os02t0689700-02
Chr02	irgsp1_rep	five_prime_UTR	28291271	28291272	.	-	.	Parent=Os02t0689700-02
Chr02	irgsp1_rep	CDS	28291094	28291270	.	-	0	Parent=Os02t0689700-02
Chr02	irgsp1_rep	three_prime_UTR	28291064	28291093	.	-	.	Parent=Os02t0689700-02
Chr02	irgsp1_rep	three_prime_UTR	28290037	28290191	.	-	.	Parent=Os02t0689700-02
Chr02	irgsp1_rep	three_prime_UTR	28289765	28289896	.	-	.	Parent=Os02t0689700-02
Chr02	irgsp1_rep	mRNA	28294322	28299880	.	-	.	ID=Os02t0689800-01;Name=Os02t0689800-01;Locus_id=Os02g0689800;Note=Similar to DEAD/DEAH box helicase domain-containing protein PIE1.;Transcript_evidence=AK120785 (DDBJ%2C Best hit);ORF_evidence=D0EX74 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524);InterPro=Helicase%2C C-terminal (IPR001650),MYB-like (IPR017877);NIAS_FLcDNA=J023010H23;Oryzabase=19978;TENOR=Os02t0689800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	28299879	28299880	.	-	.	Parent=Os02t0689800-01
Chr02	irgsp1_rep	CDS	28298429	28299878	.	-	0	Parent=Os02t0689800-01
Chr02	irgsp1_rep	CDS	28298200	28298264	.	-	2	Parent=Os02t0689800-01
Chr02	irgsp1_rep	CDS	28298055	28298122	.	-	0	Parent=Os02t0689800-01
Chr02	irgsp1_rep	CDS	28296551	28297289	.	-	1	Parent=Os02t0689800-01
Chr02	irgsp1_rep	CDS	28295266	28295732	.	-	0	Parent=Os02t0689800-01
Chr02	irgsp1_rep	CDS	28294697	28295108	.	-	1	Parent=Os02t0689800-01
Chr02	irgsp1_rep	three_prime_UTR	28294322	28294696	.	-	.	Parent=Os02t0689800-01
Chr02	irgsp1_rep	mRNA	28312696	28316195	.	-	.	ID=Os02t0689900-01;Name=Os02t0689900-01;Locus_id=Os02g0689900;CGSNL Gene Symbol=NRT1.5A;CGSNL Gene Name=NITRATE TRANSPORTER 1.5A;Oryzabase Gene Symbol Synonym(s)=OsNRT1.5A;Oryzabase Gene Name Synonym(s)=nitrate transporter 1.5A;Note=TGF-beta receptor%2C type I/II extracellular region family protein.;Transcript_evidence=AK065840 (DDBJ%2C Best hit);ORF_evidence=Q2HUR9 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J013036C22;Oryzabase=19902;Expression=AK065840;TENOR=Os02t0689900-01;KEGG=Os02t0689900-01
Chr02	irgsp1_rep	five_prime_UTR	28316082	28316195	.	-	.	Parent=Os02t0689900-01
Chr02	irgsp1_rep	CDS	28316079	28316081	.	-	0	Parent=Os02t0689900-01
Chr02	irgsp1_rep	CDS	28315706	28315880	.	-	0	Parent=Os02t0689900-01
Chr02	irgsp1_rep	CDS	28314961	28315178	.	-	2	Parent=Os02t0689900-01
Chr02	irgsp1_rep	CDS	28313939	28314495	.	-	0	Parent=Os02t0689900-01
Chr02	irgsp1_rep	CDS	28312986	28313865	.	-	1	Parent=Os02t0689900-01
Chr02	irgsp1_rep	three_prime_UTR	28312696	28312985	.	-	.	Parent=Os02t0689900-01
Chr02	irgsp1_rep	mRNA	28318735	28319280	.	-	.	ID=Os02t0690000-01;Name=Os02t0690000-01;Locus_id=Os02g0690000;Note=Conserved hypothetical protein.;Transcript_evidence=AK062737 (DDBJ%2C Best hit);ORF_evidence=NP_001056610.2 (RefSeq);NIAS_FLcDNA=001-106-E11;TENOR=Os02t0690000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	28319280	28319280	.	-	.	Parent=Os02t0690000-01
Chr02	irgsp1_rep	CDS	28318917	28319279	.	-	0	Parent=Os02t0690000-01
Chr02	irgsp1_rep	three_prime_UTR	28318735	28318916	.	-	.	Parent=Os02t0690000-01
Chr02	irgsp1_rep	mRNA	28332949	28335404	.	+	.	ID=Os02t0690200-01;Name=Os02t0690200-01;Locus_id=Os02g0690200;Note=Conserved hypothetical protein.;Transcript_evidence=AK070868 (DDBJ%2C Best hit);ORF_evidence=A2X8H3 (UniProt);NIAS_FLcDNA=J023070L01;Expression=AK070868;TENOR=Os02t0690200-01;KEGG=Os02t0690200-01
Chr02	irgsp1_rep	five_prime_UTR	28332949	28333080	.	+	.	Parent=Os02t0690200-01
Chr02	irgsp1_rep	five_prime_UTR	28334845	28334854	.	+	.	Parent=Os02t0690200-01
Chr02	irgsp1_rep	CDS	28334855	28335109	.	+	0	Parent=Os02t0690200-01
Chr02	irgsp1_rep	three_prime_UTR	28335110	28335404	.	+	.	Parent=Os02t0690200-01
Chr02	irgsp1_rep	mRNA	28335762	28344078	.	+	.	ID=Os02t0690300-01;Name=Os02t0690300-01;Locus_id=Os02g0690300;Note=Non-protein coding transcript.;Transcript_evidence=AK110969 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-174-B09;TENOR=Os02t0690300-01
Chr02	irgsp1_rep	exon	28335762	28335908	.	+	.	Parent=Os02t0690300-01
Chr02	irgsp1_rep	exon	28337629	28337754	.	+	.	Parent=Os02t0690300-01
Chr02	irgsp1_rep	exon	28338054	28339303	.	+	.	Parent=Os02t0690300-01
Chr02	irgsp1_rep	exon	28339426	28339494	.	+	.	Parent=Os02t0690300-01
Chr02	irgsp1_rep	exon	28339803	28339892	.	+	.	Parent=Os02t0690300-01
Chr02	irgsp1_rep	exon	28342758	28342809	.	+	.	Parent=Os02t0690300-01
Chr02	irgsp1_rep	exon	28342906	28342981	.	+	.	Parent=Os02t0690300-01
Chr02	irgsp1_rep	exon	28343785	28344078	.	+	.	Parent=Os02t0690300-01
Chr02	irgsp1_rep	mRNA	28345982	28350171	.	+	.	ID=Os02t0690500-01;Name=Os02t0690500-01;Locus_id=Os02g0690500;Oryzabase Gene Symbol Synonym(s)=OsPP2C26%2C PP2C26%2C OsPP37;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C26%2C protein phosphatase 2C 26%2C protein phosphatase 37;Note=Similar to TA11 protein (Fragment).;Transcript_evidence=AK101521 (DDBJ%2C Best hit);ORF_evidence=Q6ZGY0 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J033046L04;Oryzabase=17902;Expression=AK101521;TENOR=Os02t0690500-01;KEGG=Os02t0690500-01 (EC:3.1.3.43)
Chr02	irgsp1_rep	five_prime_UTR	28345982	28346402	.	+	.	Parent=Os02t0690500-01
Chr02	irgsp1_rep	CDS	28346403	28347689	.	+	0	Parent=Os02t0690500-01
Chr02	irgsp1_rep	CDS	28348017	28348130	.	+	0	Parent=Os02t0690500-01
Chr02	irgsp1_rep	CDS	28348368	28348632	.	+	0	Parent=Os02t0690500-01
Chr02	irgsp1_rep	CDS	28349488	28349612	.	+	2	Parent=Os02t0690500-01
Chr02	irgsp1_rep	three_prime_UTR	28349613	28350171	.	+	.	Parent=Os02t0690500-01
Chr02	irgsp1_rep	mRNA	28346390	28349984	.	-	.	ID=Os02t0690550-00;Name=Os02t0690550-00;Locus_id=Os02g0690550;Note=Hypothetical protein.;Transcript_evidence=tplb0027a02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0690550-00
Chr02	irgsp1_rep	five_prime_UTR	28349487	28349984	.	-	.	Parent=Os02t0690550-00
Chr02	irgsp1_rep	five_prime_UTR	28348351	28348631	.	-	.	Parent=Os02t0690550-00
Chr02	irgsp1_rep	five_prime_UTR	28348015	28348117	.	-	.	Parent=Os02t0690550-00
Chr02	irgsp1_rep	five_prime_UTR	28346842	28347687	.	-	.	Parent=Os02t0690550-00
Chr02	irgsp1_rep	CDS	28346390	28346841	.	-	0	Parent=Os02t0690550-00
Chr02	irgsp1_rep	mRNA	28352052	28353541	.	+	.	ID=Os02t0690600-01;Name=Os02t0690600-01;Locus_id=Os02g0690600;Oryzabase Gene Symbol Synonym(s)=OsPUB36;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 36%2C U-box protein 36;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK110831 (DDBJ%2C Best hit);ORF_evidence=B8AGS6 (UniProt);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488);InterPro=U box domain (IPR003613),Armadillo-like helical (IPR011989),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Armadillo-type fold (IPR016024);NIAS_FLcDNA=002-172-A04;Oryzabase=17828;Expression=AK110831;TENOR=Os02t0690600-01;KEGG=Os02t0690600-01
Chr02	irgsp1_rep	five_prime_UTR	28352052	28352086	.	+	.	Parent=Os02t0690600-01
Chr02	irgsp1_rep	CDS	28352087	28353364	.	+	0	Parent=Os02t0690600-01
Chr02	irgsp1_rep	three_prime_UTR	28353365	28353541	.	+	.	Parent=Os02t0690600-01
Chr02	irgsp1_rep	mRNA	28355603	28360508	.	+	.	ID=Os02t0690700-01;Name=Os02t0690700-01;Locus_id=Os02g0690700;Note=Clathrin coat associated protein AP-50 domain containing protein.;Transcript_evidence=AK102342 (DDBJ%2C Best hit);ORF_evidence=B6TIQ4 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: clathrin adaptor complex (GO:0030131),Cellular Component: clathrin coat of coated pit (GO:0030132),Molecular Function: protein binding (GO:0005515);InterPro=Clathrin adaptor%2C mu subunit (IPR001392),Clathrin adaptor%2C mu subunit%2C C-terminal (IPR008968),Longin-like (IPR011012),Clathrin coat associated protein AP-50 (IPR015629),Clathrin adaptor%2C mu subunit%2C conserved site (IPR018240);NIAS_FLcDNA=J033091B08;Expression=AK102342;TENOR=Os02t0690700-01;KEGG=Os02t0690700-01
Chr02	irgsp1_rep	five_prime_UTR	28355603	28355804	.	+	.	Parent=Os02t0690700-01
Chr02	irgsp1_rep	CDS	28355805	28355887	.	+	0	Parent=Os02t0690700-01
Chr02	irgsp1_rep	CDS	28356633	28356810	.	+	1	Parent=Os02t0690700-01
Chr02	irgsp1_rep	CDS	28357482	28357572	.	+	0	Parent=Os02t0690700-01
Chr02	irgsp1_rep	CDS	28357669	28357763	.	+	2	Parent=Os02t0690700-01
Chr02	irgsp1_rep	CDS	28357886	28357975	.	+	0	Parent=Os02t0690700-01
Chr02	irgsp1_rep	CDS	28358296	28358344	.	+	0	Parent=Os02t0690700-01
Chr02	irgsp1_rep	CDS	28358448	28358586	.	+	2	Parent=Os02t0690700-01
Chr02	irgsp1_rep	CDS	28358731	28358847	.	+	1	Parent=Os02t0690700-01
Chr02	irgsp1_rep	CDS	28358944	28359034	.	+	1	Parent=Os02t0690700-01
Chr02	irgsp1_rep	CDS	28359111	28359253	.	+	0	Parent=Os02t0690700-01
Chr02	irgsp1_rep	CDS	28359516	28359630	.	+	1	Parent=Os02t0690700-01
Chr02	irgsp1_rep	CDS	28359946	28359990	.	+	0	Parent=Os02t0690700-01
Chr02	irgsp1_rep	CDS	28360072	28360152	.	+	0	Parent=Os02t0690700-01
Chr02	irgsp1_rep	three_prime_UTR	28360153	28360508	.	+	.	Parent=Os02t0690700-01
Chr02	irgsp1_rep	mRNA	28362827	28366903	.	+	.	ID=Os02t0690800-01;Name=Os02t0690800-01;Locus_id=Os02g0690800;Note=Peptidase M20 family protein.;Transcript_evidence=AK105916 (DDBJ%2C Best hit);ORF_evidence=B6TIJ2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Peptidase M20 (IPR002933),Peptidase M20%2C dimerisation (IPR011650);NIAS_FLcDNA=001-204-H10;Expression=AK105916;TENOR=Os02t0690800-01;KEGG=Os02t0690800-01 (EC:3.5.1.16)
Chr02	irgsp1_rep	five_prime_UTR	28362827	28362962	.	+	.	Parent=Os02t0690800-01
Chr02	irgsp1_rep	CDS	28362963	28363292	.	+	0	Parent=Os02t0690800-01
Chr02	irgsp1_rep	CDS	28363809	28364062	.	+	0	Parent=Os02t0690800-01
Chr02	irgsp1_rep	CDS	28364172	28364280	.	+	1	Parent=Os02t0690800-01
Chr02	irgsp1_rep	CDS	28364779	28364917	.	+	0	Parent=Os02t0690800-01
Chr02	irgsp1_rep	CDS	28365032	28365089	.	+	2	Parent=Os02t0690800-01
Chr02	irgsp1_rep	CDS	28365686	28365703	.	+	1	Parent=Os02t0690800-01
Chr02	irgsp1_rep	CDS	28365808	28365930	.	+	1	Parent=Os02t0690800-01
Chr02	irgsp1_rep	CDS	28366032	28366188	.	+	1	Parent=Os02t0690800-01
Chr02	irgsp1_rep	CDS	28366270	28366303	.	+	0	Parent=Os02t0690800-01
Chr02	irgsp1_rep	CDS	28366551	28366660	.	+	2	Parent=Os02t0690800-01
Chr02	irgsp1_rep	three_prime_UTR	28366661	28366903	.	+	.	Parent=Os02t0690800-01
Chr02	irgsp1_rep	mRNA	28362851	28366903	.	+	.	ID=Os02t0690800-02;Name=Os02t0690800-02;Locus_id=Os02g0690800;Note=Peptidase M20 family protein.;Transcript_evidence=AK101568 (DDBJ%2C Best hit);ORF_evidence=B6TIJ2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Peptidase M20 (IPR002933),Peptidase M20%2C dimerisation (IPR011650);NIAS_FLcDNA=J033050F24;Expression=AK101568;TENOR=Os02t0690800-02;KEGG=Os02t0690800-02 (EC:3.5.1.16)
Chr02	irgsp1_rep	five_prime_UTR	28362851	28362962	.	+	.	Parent=Os02t0690800-02
Chr02	irgsp1_rep	CDS	28362963	28363292	.	+	0	Parent=Os02t0690800-02
Chr02	irgsp1_rep	CDS	28363809	28364062	.	+	0	Parent=Os02t0690800-02
Chr02	irgsp1_rep	CDS	28364172	28364280	.	+	1	Parent=Os02t0690800-02
Chr02	irgsp1_rep	CDS	28364779	28364917	.	+	0	Parent=Os02t0690800-02
Chr02	irgsp1_rep	CDS	28365032	28365089	.	+	2	Parent=Os02t0690800-02
Chr02	irgsp1_rep	CDS	28365686	28365703	.	+	1	Parent=Os02t0690800-02
Chr02	irgsp1_rep	CDS	28365808	28365930	.	+	1	Parent=Os02t0690800-02
Chr02	irgsp1_rep	CDS	28366032	28366188	.	+	1	Parent=Os02t0690800-02
Chr02	irgsp1_rep	CDS	28366270	28366303	.	+	0	Parent=Os02t0690800-02
Chr02	irgsp1_rep	CDS	28366551	28366660	.	+	2	Parent=Os02t0690800-02
Chr02	irgsp1_rep	three_prime_UTR	28366661	28366903	.	+	.	Parent=Os02t0690800-02
Chr02	irgsp1_rep	mRNA	28390170	28393248	.	+	.	ID=Os02t0691500-01;Name=Os02t0691500-01;Locus_id=Os02g0691500;Oryzabase Gene Symbol Synonym(s)=OsbHLH049;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 049;Note=Similar to OSIGBa0142I02-OSIGBa0101B20.1 protein.;Transcript_evidence=AK060695 (DDBJ%2C Best hit);ORF_evidence=Q01HI8 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=001-030-D07;Oryzabase=15340;TENOR=Os02t0691500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	28390170	28390257	.	+	.	Parent=Os02t0691500-01
Chr02	irgsp1_rep	CDS	28390258	28390620	.	+	0	Parent=Os02t0691500-01
Chr02	irgsp1_rep	CDS	28391052	28391636	.	+	0	Parent=Os02t0691500-01
Chr02	irgsp1_rep	CDS	28392719	28392892	.	+	0	Parent=Os02t0691500-01
Chr02	irgsp1_rep	three_prime_UTR	28392893	28393248	.	+	.	Parent=Os02t0691500-01
Chr02	irgsp1_rep	mRNA	28391039	28391642	.	-	.	ID=Os02t0691650-00;Name=Os02t0691650-00;Locus_id=Os02g0691650;Note=Hypothetical gene.;Transcript_evidence=EU948983 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0691650-00
Chr02	irgsp1_rep	five_prime_UTR	28391513	28391642	.	-	.	Parent=Os02t0691650-00
Chr02	irgsp1_rep	CDS	28391451	28391512	.	-	0	Parent=Os02t0691650-00
Chr02	irgsp1_rep	CDS	28391039	28391394	.	-	1	Parent=Os02t0691650-00
Chr02	irgsp1_rep	mRNA	28415143	28417062	.	+	.	ID=Os02t0691800-01;Name=Os02t0691800-01;Locus_id=Os02g0691800;Note=Similar to asparagine synthase family protein.;Transcript_evidence=AK062668 (DDBJ%2C Best hit);ORF_evidence=B6SVT7 (UniProt);NIAS_FLcDNA=001-105-G01;Expression=AK062668;TENOR=Os02t0691800-01;KEGG=Os02t0691800-01
Chr02	irgsp1_rep	five_prime_UTR	28415143	28415481	.	+	.	Parent=Os02t0691800-01
Chr02	irgsp1_rep	five_prime_UTR	28415758	28415922	.	+	.	Parent=Os02t0691800-01
Chr02	irgsp1_rep	five_prime_UTR	28416594	28416623	.	+	.	Parent=Os02t0691800-01
Chr02	irgsp1_rep	CDS	28416624	28416699	.	+	0	Parent=Os02t0691800-01
Chr02	irgsp1_rep	CDS	28416808	28416824	.	+	2	Parent=Os02t0691800-01
Chr02	irgsp1_rep	three_prime_UTR	28416825	28417062	.	+	.	Parent=Os02t0691800-01
Chr02	irgsp1_rep	mRNA	28420214	28423988	.	+	.	ID=Os02t0691900-01;Name=Os02t0691900-01;Locus_id=Os02g0691900;Note=Conserved hypothetical protein.;Transcript_evidence=AK242584 (DDBJ%2C Best hit);ORF_evidence=NP_001173120.1 (RefSeq);NIAS_FLcDNA=J090010K24;TENOR=Os02t0691900-01;KEGG=Os02t0691900-01
Chr02	irgsp1_rep	five_prime_UTR	28420214	28420373	.	+	.	Parent=Os02t0691900-01
Chr02	irgsp1_rep	five_prime_UTR	28420480	28420576	.	+	.	Parent=Os02t0691900-01
Chr02	irgsp1_rep	five_prime_UTR	28421735	28422339	.	+	.	Parent=Os02t0691900-01
Chr02	irgsp1_rep	CDS	28422340	28423110	.	+	0	Parent=Os02t0691900-01
Chr02	irgsp1_rep	three_prime_UTR	28423111	28423988	.	+	.	Parent=Os02t0691900-01
Chr02	irgsp1_rep	mRNA	28421416	28423535	.	-	.	ID=Os02t0692000-01;Name=Os02t0692000-01;Locus_id=Os02g0692000;Note=Similar to RING finger family protein.;Transcript_evidence=AK070774 (DDBJ%2C Best hit);ORF_evidence=Q01HI7 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J023072K15;Expression=AK070774;TENOR=Os02t0692000-01;KEGG=Os02t0692000-01
Chr02	irgsp1_rep	five_prime_UTR	28423075	28423535	.	-	.	Parent=Os02t0692000-01
Chr02	irgsp1_rep	CDS	28421905	28423074	.	-	0	Parent=Os02t0692000-01
Chr02	irgsp1_rep	three_prime_UTR	28421416	28421904	.	-	.	Parent=Os02t0692000-01
Chr02	irgsp1_rep	mRNA	28435079	28436672	.	-	.	ID=Os02t0692700-01;Name=Os02t0692700-01;Locus_id=Os02g0692700;Oryzabase Gene Name Synonym(s)=PLATZ transcription factor;Note=Similar to PLATZ transcription factor.;Transcript_evidence=AK066953 (DDBJ%2C Best hit),AK104818 (DDBJ%2C Best hit);ORF_evidence=B4FK14 (UniProt);InterPro=Protein of unknown function DUF597 (IPR006734);NIAS_FLcDNA=J013092A21,001-041-A01;Oryzabase=16184;TENOR=Os02t0692700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	28436582	28436672	.	-	.	Parent=Os02t0692700-01
Chr02	irgsp1_rep	CDS	28436531	28436581	.	-	0	Parent=Os02t0692700-01
Chr02	irgsp1_rep	CDS	28436236	28436442	.	-	0	Parent=Os02t0692700-01
Chr02	irgsp1_rep	CDS	28435923	28436138	.	-	0	Parent=Os02t0692700-01
Chr02	irgsp1_rep	CDS	28435533	28435832	.	-	0	Parent=Os02t0692700-01
Chr02	irgsp1_rep	three_prime_UTR	28435079	28435532	.	-	.	Parent=Os02t0692700-01
Chr02	irgsp1_rep	mRNA	28453885	28454908	.	+	.	ID=Os02t0693000-01;Name=Os02t0693000-01;Locus_id=Os02g0693000;Note=Conserved hypothetical protein.;Transcript_evidence=AK062683 (DDBJ%2C Best hit);ORF_evidence=A2X8I3 (UniProt);NIAS_FLcDNA=001-105-H07;Expression=AK062683;TENOR=Os02t0693000-01;KEGG=Os02t0693000-01
Chr02	irgsp1_rep	five_prime_UTR	28453885	28454000	.	+	.	Parent=Os02t0693000-01
Chr02	irgsp1_rep	CDS	28454001	28454597	.	+	0	Parent=Os02t0693000-01
Chr02	irgsp1_rep	three_prime_UTR	28454598	28454908	.	+	.	Parent=Os02t0693000-01
Chr02	irgsp1_rep	mRNA	28464743	28467359	.	-	.	ID=Os02t0693200-01;Name=Os02t0693200-01;Locus_id=Os02g0693200;Oryzabase Gene Symbol Synonym(s)=OsDjC20;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C20;Note=Similar to Chaperone protein dnaJ.;Transcript_evidence=AK071581 (DDBJ%2C Best hit);ORF_evidence=B6U8P3 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095);NIAS_FLcDNA=J023100A17;Oryzabase=12177;Expression=AK071581;TENOR=Os02t0693200-01;KEGG=Os02t0693200-01
Chr02	irgsp1_rep	five_prime_UTR	28467097	28467359	.	-	.	Parent=Os02t0693200-01
Chr02	irgsp1_rep	CDS	28467064	28467096	.	-	0	Parent=Os02t0693200-01
Chr02	irgsp1_rep	CDS	28465636	28465713	.	-	0	Parent=Os02t0693200-01
Chr02	irgsp1_rep	CDS	28465482	28465557	.	-	0	Parent=Os02t0693200-01
Chr02	irgsp1_rep	CDS	28465253	28465326	.	-	2	Parent=Os02t0693200-01
Chr02	irgsp1_rep	CDS	28465095	28465165	.	-	0	Parent=Os02t0693200-01
Chr02	irgsp1_rep	CDS	28464932	28464965	.	-	1	Parent=Os02t0693200-01
Chr02	irgsp1_rep	three_prime_UTR	28464743	28464931	.	-	.	Parent=Os02t0693200-01
Chr02	irgsp1_rep	mRNA	28464767	28467309	.	-	.	ID=Os02t0693200-02;Name=Os02t0693200-02;Locus_id=Os02g0693200;Oryzabase Gene Symbol Synonym(s)=OsDjC20;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C20;Note=Similar to Chaperone protein dnaJ.;Transcript_evidence=AK119260 (DDBJ%2C Best hit);ORF_evidence=B6U8P3 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095);NIAS_FLcDNA=001-125-H07;Oryzabase=12177;Expression=AK119260;TENOR=Os02t0693200-02;KEGG=Os02t0693200-02
Chr02	irgsp1_rep	five_prime_UTR	28467097	28467309	.	-	.	Parent=Os02t0693200-02
Chr02	irgsp1_rep	CDS	28467064	28467096	.	-	0	Parent=Os02t0693200-02
Chr02	irgsp1_rep	CDS	28465636	28465713	.	-	0	Parent=Os02t0693200-02
Chr02	irgsp1_rep	CDS	28465482	28465557	.	-	0	Parent=Os02t0693200-02
Chr02	irgsp1_rep	CDS	28465253	28465326	.	-	2	Parent=Os02t0693200-02
Chr02	irgsp1_rep	CDS	28465095	28465165	.	-	0	Parent=Os02t0693200-02
Chr02	irgsp1_rep	CDS	28464932	28464965	.	-	1	Parent=Os02t0693200-02
Chr02	irgsp1_rep	three_prime_UTR	28464767	28464931	.	-	.	Parent=Os02t0693200-02
Chr02	irgsp1_rep	mRNA	28464764	28465165	.	-	.	ID=Os02t0693200-03;Name=Os02t0693200-03;Locus_id=Os02g0693200;Oryzabase Gene Symbol Synonym(s)=OsDjC20;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C20;Note=Similar to Chaperone protein dnaJ.;Transcript_evidence=AK105032 (DDBJ%2C Best hit);ORF_evidence=B6U8P3 (UniProt);NIAS_FLcDNA=001-025-C06;Oryzabase=12177;Expression=AK105032;TENOR=Os02t0693200-03;KEGG=Os02t0693200-03
Chr02	irgsp1_rep	CDS	28465095	28465165	.	-	0	Parent=Os02t0693200-03
Chr02	irgsp1_rep	CDS	28464932	28464965	.	-	1	Parent=Os02t0693200-03
Chr02	irgsp1_rep	three_prime_UTR	28464764	28464931	.	-	.	Parent=Os02t0693200-03
Chr02	irgsp1_rep	mRNA	28472566	28478250	.	+	.	ID=Os02t0693400-01;Name=Os02t0693400-01;Locus_id=Os02g0693400;CGSNL Gene Symbol=UBP8;CGSNL Gene Name=UBIQUITIN-SPECIFIC PROCESSING PROTEASE 8;Oryzabase Gene Symbol Synonym(s)=OsUBP8%2C OsUBP20%2C UBP20;Oryzabase Gene Name Synonym(s)=ubiquitin-specific processing protease 8%2C Ubiquitin-specific protease 20;Note=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 family protein.;Transcript_evidence=AK069300 (DDBJ%2C Best hit);ORF_evidence=B9F1W9 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Molecular Function: ubiquitin thiolesterase activity (GO:0004221);InterPro=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (IPR001394),Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2%2C conserved site (IPR018200);NIAS_FLcDNA=J023016A03;Oryzabase=22891;Expression=AK069300;TENOR=Os02t0693400-01;KEGG=Os02t0693400-01 (EC:3.1.2.15)
Chr02	irgsp1_rep	five_prime_UTR	28472566	28472824	.	+	.	Parent=Os02t0693400-01
Chr02	irgsp1_rep	CDS	28472825	28472881	.	+	0	Parent=Os02t0693400-01
Chr02	irgsp1_rep	CDS	28473538	28473621	.	+	0	Parent=Os02t0693400-01
Chr02	irgsp1_rep	CDS	28473756	28473815	.	+	0	Parent=Os02t0693400-01
Chr02	irgsp1_rep	CDS	28473905	28473979	.	+	0	Parent=Os02t0693400-01
Chr02	irgsp1_rep	CDS	28474590	28474664	.	+	0	Parent=Os02t0693400-01
Chr02	irgsp1_rep	CDS	28474839	28474916	.	+	0	Parent=Os02t0693400-01
Chr02	irgsp1_rep	CDS	28475197	28475274	.	+	0	Parent=Os02t0693400-01
Chr02	irgsp1_rep	CDS	28475368	28475488	.	+	0	Parent=Os02t0693400-01
Chr02	irgsp1_rep	CDS	28475591	28475736	.	+	2	Parent=Os02t0693400-01
Chr02	irgsp1_rep	three_prime_UTR	28475737	28476162	.	+	.	Parent=Os02t0693400-01
Chr02	irgsp1_rep	three_prime_UTR	28476236	28476571	.	+	.	Parent=Os02t0693400-01
Chr02	irgsp1_rep	three_prime_UTR	28476655	28476774	.	+	.	Parent=Os02t0693400-01
Chr02	irgsp1_rep	three_prime_UTR	28476941	28477430	.	+	.	Parent=Os02t0693400-01
Chr02	irgsp1_rep	three_prime_UTR	28477747	28478250	.	+	.	Parent=Os02t0693400-01
Chr02	irgsp1_rep	mRNA	28472700	28478198	.	-	.	ID=Os02t0693450-00;Name=Os02t0693450-00;Locus_id=Os02g0693450;Note=Hypothetical protein.;Transcript_evidence=tplb0060g10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0693450-00
Chr02	irgsp1_rep	five_prime_UTR	28477901	28478198	.	-	.	Parent=Os02t0693450-00
Chr02	irgsp1_rep	CDS	28477757	28477900	.	-	0	Parent=Os02t0693450-00
Chr02	irgsp1_rep	CDS	28477285	28477437	.	-	0	Parent=Os02t0693450-00
Chr02	irgsp1_rep	three_prime_UTR	28476930	28477284	.	-	.	Parent=Os02t0693450-00
Chr02	irgsp1_rep	three_prime_UTR	28476646	28476767	.	-	.	Parent=Os02t0693450-00
Chr02	irgsp1_rep	three_prime_UTR	28476232	28476560	.	-	.	Parent=Os02t0693450-00
Chr02	irgsp1_rep	three_prime_UTR	28475987	28476159	.	-	.	Parent=Os02t0693450-00
Chr02	irgsp1_rep	three_prime_UTR	28475575	28475699	.	-	.	Parent=Os02t0693450-00
Chr02	irgsp1_rep	three_prime_UTR	28475312	28475471	.	-	.	Parent=Os02t0693450-00
Chr02	irgsp1_rep	three_prime_UTR	28474780	28474938	.	-	.	Parent=Os02t0693450-00
Chr02	irgsp1_rep	three_prime_UTR	28474076	28474197	.	-	.	Parent=Os02t0693450-00
Chr02	irgsp1_rep	three_prime_UTR	28473822	28473974	.	-	.	Parent=Os02t0693450-00
Chr02	irgsp1_rep	three_prime_UTR	28473546	28473616	.	-	.	Parent=Os02t0693450-00
Chr02	irgsp1_rep	three_prime_UTR	28472700	28472889	.	-	.	Parent=Os02t0693450-00
Chr02	irgsp1_rep	mRNA	28478690	28481323	.	-	.	ID=Os02t0693500-01;Name=Os02t0693500-01;Locus_id=Os02g0693500;Note=Similar to OSIGBa0142I02-OSIGBa0101B20.17 protein.;Transcript_evidence=AK103651 (DDBJ%2C Best hit);ORF_evidence=Q01HH2 (UniProt);InterPro=SNARE associated Golgi protein (IPR015414);NIAS_FLcDNA=J033135D20;TENOR=Os02t0693500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	28481244	28481323	.	-	.	Parent=Os02t0693500-01
Chr02	irgsp1_rep	CDS	28481083	28481243	.	-	0	Parent=Os02t0693500-01
Chr02	irgsp1_rep	CDS	28479622	28479892	.	-	1	Parent=Os02t0693500-01
Chr02	irgsp1_rep	CDS	28479283	28479453	.	-	0	Parent=Os02t0693500-01
Chr02	irgsp1_rep	CDS	28479032	28479196	.	-	0	Parent=Os02t0693500-01
Chr02	irgsp1_rep	three_prime_UTR	28478690	28479031	.	-	.	Parent=Os02t0693500-01
Chr02	irgsp1_rep	mRNA	28487586	28498618	.	-	.	ID=Os02t0693700-01;Name=Os02t0693700-01;Locus_id=Os02g0693700;CGSNL Gene Symbol=MDR11;CGSNL Gene Name=MULTIDRUG RESISTANCE 11;Oryzabase Gene Symbol Synonym(s)=OsABCB11%2C ABCB11%2C OsPGP11%2C OsMDR11%2C OsABCB11_1%2C OsABCB11_2;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCB subgroup member 11%2C P-Glycoprotein 11%2C multidrug resistance 11;Note=Hypothetical conserved gene.;Transcript_evidence=AK106518 (DDBJ%2C Best hit);ORF_evidence=Q6Z894 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);NIAS_FLcDNA=002-107-C02;Oryzabase=11930;Expression=AK106518;TENOR=Os02t0693700-01;KEGG=Os02t0693700-01
Chr02	irgsp1_rep	five_prime_UTR	28498418	28498618	.	-	.	Parent=Os02t0693700-01
Chr02	irgsp1_rep	CDS	28498130	28498417	.	-	0	Parent=Os02t0693700-01
Chr02	irgsp1_rep	CDS	28489327	28489773	.	-	0	Parent=Os02t0693700-01
Chr02	irgsp1_rep	CDS	28489003	28489250	.	-	0	Parent=Os02t0693700-01
Chr02	irgsp1_rep	CDS	28488500	28488912	.	-	1	Parent=Os02t0693700-01
Chr02	irgsp1_rep	CDS	28487833	28488398	.	-	2	Parent=Os02t0693700-01
Chr02	irgsp1_rep	three_prime_UTR	28487586	28487832	.	-	.	Parent=Os02t0693700-01
Chr02	irgsp1_rep	mRNA	28487605	28498494	.	-	.	ID=Os02t0693700-02;Name=Os02t0693700-02;Locus_id=Os02g0693700;CGSNL Gene Symbol=MDR11;CGSNL Gene Name=MULTIDRUG RESISTANCE 11;Oryzabase Gene Symbol Synonym(s)=OsABCB11%2C ABCB11%2C OsPGP11%2C OsMDR11%2C OsABCB11_1%2C OsABCB11_2;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCB subgroup member 11%2C P-Glycoprotein 11%2C multidrug resistance 11;Note=Similar to P-glycoprotein ABCB5.;Transcript_evidence=AK103774 (DDBJ%2C Best hit);ORF_evidence=B8AGT9 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);NIAS_FLcDNA=J033143M23;Oryzabase=11930;Expression=AK103774;TENOR=Os02t0693700-02;KEGG=Os02t0693700-02
Chr02	irgsp1_rep	five_prime_UTR	28498418	28498494	.	-	.	Parent=Os02t0693700-02
Chr02	irgsp1_rep	CDS	28498130	28498417	.	-	0	Parent=Os02t0693700-02
Chr02	irgsp1_rep	CDS	28497972	28498026	.	-	0	Parent=Os02t0693700-02
Chr02	irgsp1_rep	CDS	28497707	28497882	.	-	2	Parent=Os02t0693700-02
Chr02	irgsp1_rep	CDS	28491450	28491650	.	-	0	Parent=Os02t0693700-02
Chr02	irgsp1_rep	CDS	28491095	28491354	.	-	0	Parent=Os02t0693700-02
Chr02	irgsp1_rep	CDS	28490079	28491005	.	-	1	Parent=Os02t0693700-02
Chr02	irgsp1_rep	CDS	28489327	28489987	.	-	1	Parent=Os02t0693700-02
Chr02	irgsp1_rep	CDS	28489003	28489250	.	-	0	Parent=Os02t0693700-02
Chr02	irgsp1_rep	CDS	28488500	28488912	.	-	1	Parent=Os02t0693700-02
Chr02	irgsp1_rep	CDS	28487833	28488398	.	-	2	Parent=Os02t0693700-02
Chr02	irgsp1_rep	three_prime_UTR	28487605	28487832	.	-	.	Parent=Os02t0693700-02
Chr02	irgsp1_rep	mRNA	28512035	28514171	.	-	.	ID=Os02t0694100-01;Name=Os02t0694100-01;Locus_id=Os02g0694100;Oryzabase Gene Symbol Synonym(s)=OsFbox106%2C Os_F0496;Oryzabase Gene Name Synonym(s)=F-box protein 106;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK242690 (DDBJ%2C Best hit);ORF_evidence=NP_001151131.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),FBD-like (IPR006566),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J090034G11;Oryzabase=16898;TENOR=Os02t0694100-01;KEGG=Os02t0694100-01
Chr02	irgsp1_rep	five_prime_UTR	28513991	28514171	.	-	.	Parent=Os02t0694100-01
Chr02	irgsp1_rep	CDS	28513007	28513990	.	-	0	Parent=Os02t0694100-01
Chr02	irgsp1_rep	CDS	28512768	28512920	.	-	0	Parent=Os02t0694100-01
Chr02	irgsp1_rep	CDS	28512389	28512679	.	-	0	Parent=Os02t0694100-01
Chr02	irgsp1_rep	three_prime_UTR	28512035	28512388	.	-	.	Parent=Os02t0694100-01
Chr02	irgsp1_rep	mRNA	28517115	28520319	.	-	.	ID=Os02t0694201-01;Name=Os02t0694201-01;Locus_id=Os02g0694201;Note=Acyl-CoA N-acyltransferase domain containing protein.;Transcript_evidence=AK242384 (DDBJ%2C Best hit);ORF_evidence=NP_001173121.1 (RefSeq);InterPro=Acyl-CoA N-acyltransferase (IPR016181);NIAS_FLcDNA=J080046C11;TENOR=Os02t0694201-01;KEGG=Os02t0694201-01
Chr02	irgsp1_rep	five_prime_UTR	28520319	28520319	.	-	.	Parent=Os02t0694201-01
Chr02	irgsp1_rep	CDS	28520122	28520318	.	-	0	Parent=Os02t0694201-01
Chr02	irgsp1_rep	CDS	28517454	28517637	.	-	1	Parent=Os02t0694201-01
Chr02	irgsp1_rep	three_prime_UTR	28517115	28517453	.	-	.	Parent=Os02t0694201-01
Chr02	irgsp1_rep	mRNA	28523501	28530172	.	+	.	ID=Os02t0694300-01;Name=Os02t0694300-01;Locus_id=Os02g0694300;Note=Conserved hypothetical protein.;Transcript_evidence=AK069517 (DDBJ%2C Best hit);ORF_evidence=B9F1X4 (UniProt);NIAS_FLcDNA=J023025F06;TENOR=Os02t0694300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	28523501	28523600	.	+	.	Parent=Os02t0694300-01
Chr02	irgsp1_rep	five_prime_UTR	28523706	28523755	.	+	.	Parent=Os02t0694300-01
Chr02	irgsp1_rep	five_prime_UTR	28524346	28524570	.	+	.	Parent=Os02t0694300-01
Chr02	irgsp1_rep	CDS	28524571	28524717	.	+	0	Parent=Os02t0694300-01
Chr02	irgsp1_rep	CDS	28524948	28524950	.	+	0	Parent=Os02t0694300-01
Chr02	irgsp1_rep	three_prime_UTR	28524951	28525045	.	+	.	Parent=Os02t0694300-01
Chr02	irgsp1_rep	three_prime_UTR	28525533	28525645	.	+	.	Parent=Os02t0694300-01
Chr02	irgsp1_rep	three_prime_UTR	28526321	28526422	.	+	.	Parent=Os02t0694300-01
Chr02	irgsp1_rep	three_prime_UTR	28526592	28526614	.	+	.	Parent=Os02t0694300-01
Chr02	irgsp1_rep	three_prime_UTR	28526974	28527118	.	+	.	Parent=Os02t0694300-01
Chr02	irgsp1_rep	three_prime_UTR	28527504	28527561	.	+	.	Parent=Os02t0694300-01
Chr02	irgsp1_rep	three_prime_UTR	28528596	28528707	.	+	.	Parent=Os02t0694300-01
Chr02	irgsp1_rep	three_prime_UTR	28529833	28530172	.	+	.	Parent=Os02t0694300-01
Chr02	irgsp1_rep	mRNA	28532904	28536954	.	+	.	ID=Os02t0694400-01;Name=Os02t0694400-01;Locus_id=Os02g0694400;Note=Conserved hypothetical protein.;Transcript_evidence=AK067014 (DDBJ%2C Best hit);ORF_evidence=B9F1X5 (UniProt);NIAS_FLcDNA=J013091L19;Expression=AK067014;TENOR=Os02t0694400-01;KEGG=Os02t0694400-01
Chr02	irgsp1_rep	five_prime_UTR	28532904	28533152	.	+	.	Parent=Os02t0694400-01
Chr02	irgsp1_rep	CDS	28533153	28533440	.	+	0	Parent=Os02t0694400-01
Chr02	irgsp1_rep	three_prime_UTR	28533441	28534516	.	+	.	Parent=Os02t0694400-01
Chr02	irgsp1_rep	three_prime_UTR	28534611	28534989	.	+	.	Parent=Os02t0694400-01
Chr02	irgsp1_rep	three_prime_UTR	28535663	28535889	.	+	.	Parent=Os02t0694400-01
Chr02	irgsp1_rep	three_prime_UTR	28535972	28536134	.	+	.	Parent=Os02t0694400-01
Chr02	irgsp1_rep	three_prime_UTR	28536535	28536954	.	+	.	Parent=Os02t0694400-01
Chr02	irgsp1_rep	mRNA	28532904	28536958	.	+	.	ID=Os02t0694400-02;Name=Os02t0694400-02;Locus_id=Os02g0694400;Note=Conserved hypothetical protein.;Transcript_evidence=AK102500 (DDBJ%2C Best hit);ORF_evidence=B9F1X5 (UniProt);NIAS_FLcDNA=J033095C02;Expression=AK102500;TENOR=Os02t0694400-02;KEGG=Os02t0694400-02
Chr02	irgsp1_rep	five_prime_UTR	28532904	28533152	.	+	.	Parent=Os02t0694400-02
Chr02	irgsp1_rep	CDS	28533153	28533440	.	+	0	Parent=Os02t0694400-02
Chr02	irgsp1_rep	three_prime_UTR	28533441	28536134	.	+	.	Parent=Os02t0694400-02
Chr02	irgsp1_rep	three_prime_UTR	28536535	28536958	.	+	.	Parent=Os02t0694400-02
Chr02	irgsp1_rep	mRNA	28538659	28543167	.	+	.	ID=Os02t0694600-00;Name=Os02t0694600-00;Locus_id=Os02g0694600;Note=Hypothetical conserved gene.;Transcript_evidence=CT837731 (DDBJ%2C Best hit);ORF_evidence=B8AHB0 (UniProt);InterPro=Ubiquitin-conjugating enzyme/RWD-like (IPR016135);TENOR=Os02t0694600-00;KEGG=Os02t0694600-00 (EC:6.3.2.19)
Chr02	irgsp1_rep	five_prime_UTR	28538659	28539126	.	+	.	Parent=Os02t0694600-00
Chr02	irgsp1_rep	CDS	28539127	28539444	.	+	0	Parent=Os02t0694600-00
Chr02	irgsp1_rep	CDS	28539947	28540129	.	+	0	Parent=Os02t0694600-00
Chr02	irgsp1_rep	three_prime_UTR	28540130	28540579	.	+	.	Parent=Os02t0694600-00
Chr02	irgsp1_rep	three_prime_UTR	28540907	28541023	.	+	.	Parent=Os02t0694600-00
Chr02	irgsp1_rep	three_prime_UTR	28541106	28541162	.	+	.	Parent=Os02t0694600-00
Chr02	irgsp1_rep	three_prime_UTR	28541960	28542186	.	+	.	Parent=Os02t0694600-00
Chr02	irgsp1_rep	three_prime_UTR	28542270	28542426	.	+	.	Parent=Os02t0694600-00
Chr02	irgsp1_rep	three_prime_UTR	28542742	28543167	.	+	.	Parent=Os02t0694600-00
Chr02	irgsp1_rep	mRNA	28545174	28548337	.	+	.	ID=Os02t0694700-01;Name=Os02t0694700-01;Locus_id=Os02g0694700;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=AK106892 (DDBJ%2C Best hit);ORF_evidence=A3AAC1 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),RWD domain (IPR006575),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Ubiquitin-conjugating enzyme/RWD-like (IPR016135),Zinc finger%2C RING-type%2C conserved site (IPR017907);NIAS_FLcDNA=002-118-G07;TENOR=Os02t0694700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	28545174	28545186	.	+	.	Parent=Os02t0694700-01
Chr02	irgsp1_rep	CDS	28545187	28545438	.	+	0	Parent=Os02t0694700-01
Chr02	irgsp1_rep	CDS	28546070	28546144	.	+	0	Parent=Os02t0694700-01
Chr02	irgsp1_rep	CDS	28546237	28546771	.	+	0	Parent=Os02t0694700-01
Chr02	irgsp1_rep	CDS	28546850	28547231	.	+	2	Parent=Os02t0694700-01
Chr02	irgsp1_rep	CDS	28547333	28547420	.	+	1	Parent=Os02t0694700-01
Chr02	irgsp1_rep	three_prime_UTR	28547421	28547574	.	+	.	Parent=Os02t0694700-01
Chr02	irgsp1_rep	three_prime_UTR	28547664	28547829	.	+	.	Parent=Os02t0694700-01
Chr02	irgsp1_rep	three_prime_UTR	28548098	28548337	.	+	.	Parent=Os02t0694700-01
Chr02	irgsp1_rep	mRNA	28548351	28551798	.	-	.	ID=Os02t0694800-01;Name=Os02t0694800-01;Locus_id=Os02g0694800;Note=Similar to ATP binding / protein kinase.;Transcript_evidence=AK068426 (DDBJ%2C Best hit);ORF_evidence=NP_197183.2 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J013157D01;TENOR=Os02t0694800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	28551798	28551798	.	-	.	Parent=Os02t0694800-01
Chr02	irgsp1_rep	CDS	28551631	28551797	.	-	0	Parent=Os02t0694800-01
Chr02	irgsp1_rep	CDS	28550738	28550866	.	-	1	Parent=Os02t0694800-01
Chr02	irgsp1_rep	CDS	28550590	28550647	.	-	1	Parent=Os02t0694800-01
Chr02	irgsp1_rep	CDS	28550409	28550489	.	-	0	Parent=Os02t0694800-01
Chr02	irgsp1_rep	CDS	28550235	28550306	.	-	0	Parent=Os02t0694800-01
Chr02	irgsp1_rep	CDS	28549912	28550156	.	-	0	Parent=Os02t0694800-01
Chr02	irgsp1_rep	CDS	28549726	28549797	.	-	1	Parent=Os02t0694800-01
Chr02	irgsp1_rep	CDS	28549531	28549641	.	-	1	Parent=Os02t0694800-01
Chr02	irgsp1_rep	CDS	28549376	28549457	.	-	1	Parent=Os02t0694800-01
Chr02	irgsp1_rep	CDS	28549237	28549283	.	-	0	Parent=Os02t0694800-01
Chr02	irgsp1_rep	CDS	28548987	28549068	.	-	1	Parent=Os02t0694800-01
Chr02	irgsp1_rep	CDS	28548679	28548768	.	-	0	Parent=Os02t0694800-01
Chr02	irgsp1_rep	three_prime_UTR	28548351	28548678	.	-	.	Parent=Os02t0694800-01
Chr02	irgsp1_rep	mRNA	28552733	28557616	.	+	.	ID=Os02t0694900-00;Name=Os02t0694900-00;Locus_id=Os02g0694900;CGSNL Gene Symbol=MKK10-1;CGSNL Gene Name=MITOGEN-ACTIVATED PROTEIN KINASE KINASE 10-1;Oryzabase Gene Symbol Synonym(s)=OsMKK10-1%2C MPKK10.1;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=EU945341 (DDBJ);ORF_evidence=Q6YUQ9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=8835;TENOR=Os02t0694900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	28552733	28553673	.	+	0	Parent=Os02t0694900-00
Chr02	irgsp1_rep	CDS	28557340	28557616	.	+	1	Parent=Os02t0694900-00
Chr02	irgsp1_rep	mRNA	28555557	28556687	.	+	.	ID=Os02t0695050-00;Name=Os02t0695050-00;Locus_id=Os02g0695050;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=BT070111 (DDBJ);ORF_evidence=A2YVL1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Protein of unknown function DUF868%2C plant (IPR008586);TENOR=Os02t0695050-00
Chr02	irgsp1_rep	CDS	28555557	28556042	.	+	0	Parent=Os02t0695050-00
Chr02	irgsp1_rep	CDS	28556391	28556687	.	+	0	Parent=Os02t0695050-00
Chr02	irgsp1_rep	mRNA	28558264	28560020	.	-	.	ID=Os02t0695200-01;Name=Os02t0695200-01;Locus_id=Os02g0695200;Oryzabase Gene Symbol Synonym(s)=OsMYB58/63-L%2C MYB58/63-L%2C OsMYB58/63a%2C MYB58/63a;Oryzabase Gene Name Synonym(s)=OsMyb4-like protein;Note=Similar to P-type R2R3 Myb protein (Fragment).;Transcript_evidence=AK111720 (DDBJ%2C Best hit);ORF_evidence=P20024 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J023030I19;Oryzabase=15608;Expression=AK111720;TENOR=Os02t0695200-01;KEGG=Os02t0695200-01
Chr02	irgsp1_rep	five_prime_UTR	28559854	28560020	.	-	.	Parent=Os02t0695200-01
Chr02	irgsp1_rep	CDS	28559585	28559853	.	-	0	Parent=Os02t0695200-01
Chr02	irgsp1_rep	CDS	28558736	28559489	.	-	1	Parent=Os02t0695200-01
Chr02	irgsp1_rep	three_prime_UTR	28558264	28558735	.	-	.	Parent=Os02t0695200-01
Chr02	irgsp1_rep	mRNA	28558303	28559922	.	-	.	ID=Os02t0695200-02;Name=Os02t0695200-02;Locus_id=Os02g0695200;Oryzabase Gene Symbol Synonym(s)=OsMYB58/63-L%2C MYB58/63-L%2C OsMYB58/63a%2C MYB58/63a;Oryzabase Gene Name Synonym(s)=OsMyb4-like protein;Note=Similar to P-type R2R3 Myb protein (Fragment).;Transcript_evidence=AK111933 (DDBJ%2C Best hit);ORF_evidence=P20024 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=001-017-B10;Oryzabase=15608;Expression=AK111933;TENOR=Os02t0695200-02;KEGG=Os02t0695200-02
Chr02	irgsp1_rep	five_prime_UTR	28559854	28559922	.	-	.	Parent=Os02t0695200-02
Chr02	irgsp1_rep	CDS	28559585	28559853	.	-	0	Parent=Os02t0695200-02
Chr02	irgsp1_rep	CDS	28558736	28559489	.	-	1	Parent=Os02t0695200-02
Chr02	irgsp1_rep	three_prime_UTR	28558303	28558735	.	-	.	Parent=Os02t0695200-02
Chr02	irgsp1_rep	mRNA	28578290	28579120	.	+	.	ID=Os02t0695600-01;Name=Os02t0695600-01;Locus_id=Os02g0695600;Note=Conserved hypothetical protein.;Transcript_evidence=AK062960 (DDBJ%2C Best hit);ORF_evidence=A2X8J9 (UniProt);NIAS_FLcDNA=001-109-D05;Expression=AK062960;TENOR=Os02t0695600-01;KEGG=Os02t0695600-01
Chr02	irgsp1_rep	five_prime_UTR	28578290	28578512	.	+	.	Parent=Os02t0695600-01
Chr02	irgsp1_rep	CDS	28578513	28578741	.	+	0	Parent=Os02t0695600-01
Chr02	irgsp1_rep	CDS	28578855	28578913	.	+	2	Parent=Os02t0695600-01
Chr02	irgsp1_rep	three_prime_UTR	28578914	28579120	.	+	.	Parent=Os02t0695600-01
Chr02	irgsp1_rep	mRNA	28581566	28582136	.	+	.	ID=Os02t0695700-01;Name=Os02t0695700-01;Locus_id=Os02g0695700;Note=Conserved hypothetical protein.;Transcript_evidence=AK242808 (DDBJ%2C Best hit);ORF_evidence=NP_001047811.1 (RefSeq);NIAS_FLcDNA=J090060I10;TENOR=Os02t0695700-01;KEGG=Os02t0695700-01
Chr02	irgsp1_rep	five_prime_UTR	28581566	28581610	.	+	.	Parent=Os02t0695700-01
Chr02	irgsp1_rep	CDS	28581611	28581880	.	+	0	Parent=Os02t0695700-01
Chr02	irgsp1_rep	three_prime_UTR	28581881	28582136	.	+	.	Parent=Os02t0695700-01
Chr02	irgsp1_rep	mRNA	28582125	28584180	.	-	.	ID=Os02t0695800-01;Name=Os02t0695800-01;Locus_id=Os02g0695800;Oryzabase Gene Symbol Synonym(s)=OsOPT8;Oryzabase Gene Name Synonym(s)=Oligopeptide transporter 8;Note=Similar to oligopeptide transporter 4.;Transcript_evidence=AK071310 (DDBJ%2C Best hit);ORF_evidence=NP_001152089.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085);InterPro=Oligopeptide transporter OPT superfamily (IPR004813);NIAS_FLcDNA=J023083N24;Oryzabase=12493;TENOR=Os02t0695800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	28584179	28584180	.	-	.	Parent=Os02t0695800-01
Chr02	irgsp1_rep	CDS	28583724	28584178	.	-	0	Parent=Os02t0695800-01
Chr02	irgsp1_rep	CDS	28583384	28583636	.	-	1	Parent=Os02t0695800-01
Chr02	irgsp1_rep	CDS	28583086	28583268	.	-	0	Parent=Os02t0695800-01
Chr02	irgsp1_rep	CDS	28582362	28582982	.	-	0	Parent=Os02t0695800-01
Chr02	irgsp1_rep	three_prime_UTR	28582125	28582361	.	-	.	Parent=Os02t0695800-01
Chr02	irgsp1_rep	mRNA	28586946	28587965	.	-	.	ID=Os02t0695900-01;Name=Os02t0695900-01;Locus_id=Os02g0695900;Note=Similar to oligopeptide transporter 4.;Transcript_evidence=AK062910 (DDBJ%2C Best hit);ORF_evidence=NP_001152089.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085);InterPro=Oligopeptide transporter OPT superfamily (IPR004813);NIAS_FLcDNA=001-108-G05;TENOR=Os02t0695900-01;KEGG=Os02t0695900-01
Chr02	irgsp1_rep	five_prime_UTR	28587794	28587965	.	-	.	Parent=Os02t0695900-01
Chr02	irgsp1_rep	CDS	28587281	28587793	.	-	0	Parent=Os02t0695900-01
Chr02	irgsp1_rep	CDS	28587069	28587170	.	-	0	Parent=Os02t0695900-01
Chr02	irgsp1_rep	three_prime_UTR	28586946	28587068	.	-	.	Parent=Os02t0695900-01
Chr02	irgsp1_rep	mRNA	28587279	28587770	.	+	.	ID=Os02t0696200-00;Name=Os02t0696200-00;Locus_id=Os02g0696200;Note=Hypothetical protein.;Transcript_evidence=AK353783 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0696200-00
Chr02	irgsp1_rep	five_prime_UTR	28587279	28587280	.	+	.	Parent=Os02t0696200-00
Chr02	irgsp1_rep	CDS	28587281	28587770	.	+	0	Parent=Os02t0696200-00
Chr02	irgsp1_rep	mRNA	28622391	28624619	.	+	.	ID=Os02t0696500-01;Name=Os02t0696500-01;Locus_id=Os02g0696500;CGSNL Gene Symbol=XTH23;CGSNL Gene Name=XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 23;Oryzabase Gene Symbol Synonym(s)=OsXTH23%2C XTR3%2C OsXTR3;Oryzabase Gene Name Synonym(s)=xyloglucan endotransglucosylase/hydrolase%2C xyloglucan endotransglucosylase 23%2C XET-related gene 3;Note=Concanavalin A-like lectin/glucanase domain containing protein.;Transcript_evidence=AK101915 (DDBJ%2C Best hit),AK105864 (DDBJ%2C Best hit);ORF_evidence=C5IG71 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: cellular glucan metabolic process (GO:0006073),Cellular Component: cell wall (GO:0005618),Cellular Component: apoplast (GO:0048046),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762);InterPro=Glycoside hydrolase%2C family 16 (IPR000757),Concanavalin A-like lectin/glucanase (IPR008985),Xyloglucan endo-transglycosylase%2C C-terminal (IPR010713),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Xyloglucan endotransglucosylase/hydrolase (IPR016455);NIAS_FLcDNA=J033071H14,001-204-A05;Oryzabase=6504;TENOR=Os02t0696500-01
Chr02	irgsp1_rep	five_prime_UTR	28622391	28622539	.	+	.	Parent=Os02t0696500-01
Chr02	irgsp1_rep	CDS	28622540	28622738	.	+	0	Parent=Os02t0696500-01
Chr02	irgsp1_rep	CDS	28622892	28622992	.	+	2	Parent=Os02t0696500-01
Chr02	irgsp1_rep	CDS	28623594	28623802	.	+	0	Parent=Os02t0696500-01
Chr02	irgsp1_rep	CDS	28623885	28624431	.	+	1	Parent=Os02t0696500-01
Chr02	irgsp1_rep	three_prime_UTR	28624432	28624619	.	+	.	Parent=Os02t0696500-01
Chr02	irgsp1_rep	mRNA	28622487	28623345	.	+	.	ID=Os02t0696500-02;Name=Os02t0696500-02;Locus_id=Os02g0696500;CGSNL Gene Symbol=XTH23;CGSNL Gene Name=XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 23;Oryzabase Gene Symbol Synonym(s)=OsXTH23%2C XTR3%2C OsXTR3;Oryzabase Gene Name Synonym(s)=xyloglucan endotransglucosylase/hydrolase%2C xyloglucan endotransglucosylase 23%2C XET-related gene 3;Note=Similar to Xyloglucan endotransglucosylase/hydrolasev protein 30 (Fragment).;Transcript_evidence=AK111242 (DDBJ%2C Best hit);ORF_evidence=A6MZP8 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 16 (IPR000757),Concanavalin A-like lectin/glucanase (IPR008985),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320);NIAS_FLcDNA=002-180-D02;Oryzabase=6504;Expression=AK111242;TENOR=Os02t0696500-02;KEGG=Os02t0696500-02 (EC:2.4.1.207)
Chr02	irgsp1_rep	five_prime_UTR	28622487	28622539	.	+	.	Parent=Os02t0696500-02
Chr02	irgsp1_rep	CDS	28622540	28622738	.	+	0	Parent=Os02t0696500-02
Chr02	irgsp1_rep	CDS	28622892	28623097	.	+	2	Parent=Os02t0696500-02
Chr02	irgsp1_rep	three_prime_UTR	28623098	28623345	.	+	.	Parent=Os02t0696500-02
Chr02	irgsp1_rep	mRNA	28625318	28626767	.	-	.	ID=Os02t0696600-00;Name=Os02t0696600-00;Locus_id=Os02g0696600;Note=Hypothetical conserved gene.;Transcript_evidence=AK061672 (DDBJ%2C Secondary hit);ORF_evidence=B9F1Y0 (UniProt);Expression=AK061672;TENOR=Os02t0696600-00;KEGG=Os02t0696600-00
Chr02	irgsp1_rep	five_prime_UTR	28626767	28626767	.	-	.	Parent=Os02t0696600-00
Chr02	irgsp1_rep	CDS	28626608	28626766	.	-	0	Parent=Os02t0696600-00
Chr02	irgsp1_rep	CDS	28626504	28626539	.	-	0	Parent=Os02t0696600-00
Chr02	irgsp1_rep	CDS	28626139	28626396	.	-	0	Parent=Os02t0696600-00
Chr02	irgsp1_rep	three_prime_UTR	28626134	28626138	.	-	.	Parent=Os02t0696600-00
Chr02	irgsp1_rep	three_prime_UTR	28625318	28625575	.	-	.	Parent=Os02t0696600-00
Chr02	irgsp1_rep	mRNA	28630069	28630932	.	-	.	ID=Os02t0696650-00;Name=Os02t0696650-00;Locus_id=Os02g0696650;Note=Hypothetical gene.;Transcript_evidence=CT833681 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os02t0696650-00;KEGG=Os02t0696650-00
Chr02	irgsp1_rep	five_prime_UTR	28630932	28630932	.	-	.	Parent=Os02t0696650-00
Chr02	irgsp1_rep	CDS	28630665	28630931	.	-	0	Parent=Os02t0696650-00
Chr02	irgsp1_rep	three_prime_UTR	28630069	28630664	.	-	.	Parent=Os02t0696650-00
Chr02	irgsp1_rep	mRNA	28643011	28645617	.	+	.	ID=Os02t0696700-01;Name=Os02t0696700-01;Locus_id=Os02g0696700;Oryzabase Gene Symbol Synonym(s)=JMJ707%2C Os JMJ707%2C DLN65%2C OsDLN65;Oryzabase Gene Name Synonym(s)=Jumonji 707%2C DLN repressor 65%2C DLN motif protein 65;Note=Transcription factor jumonji/aspartyl beta-hydroxylase domain containing protein.;Transcript_evidence=AK060255 (DDBJ%2C Best hit);ORF_evidence=B8AHB4 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: protein binding (GO:0005515);InterPro=Transcription factor jumonji/aspartyl beta-hydroxylase (IPR003347),Zinc finger%2C C5HC2-type (IPR004198),Transcription factor jumonji (IPR013129);NIAS_FLcDNA=001-004-E05;Oryzabase=15205;TENOR=Os02t0696700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	28643011	28643053	.	+	0	Parent=Os02t0696700-01
Chr02	irgsp1_rep	CDS	28643174	28643578	.	+	2	Parent=Os02t0696700-01
Chr02	irgsp1_rep	CDS	28643658	28644010	.	+	2	Parent=Os02t0696700-01
Chr02	irgsp1_rep	CDS	28644097	28644342	.	+	0	Parent=Os02t0696700-01
Chr02	irgsp1_rep	CDS	28644665	28645039	.	+	0	Parent=Os02t0696700-01
Chr02	irgsp1_rep	three_prime_UTR	28645040	28645617	.	+	.	Parent=Os02t0696700-01
Chr02	irgsp1_rep	mRNA	28653055	28657883	.	+	.	ID=Os02t0696900-00;Name=Os02t0696900-00;Locus_id=Os02g0696900;Oryzabase Gene Symbol Synonym(s)=OsKANADI1%2C OsKANADI2%2C KANADI1%2C KANADI2;Note=Myb-like DNA-binding domain%2C SHAQKYF class domain containing protein.;Transcript_evidence=BT069143 (DDBJ);ORF_evidence=Q6YUI1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778);Oryzabase=11415;TENOR=Os02t0696900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	28653055	28653068	.	+	.	Parent=Os02t0696900-00
Chr02	irgsp1_rep	CDS	28653069	28653726	.	+	0	Parent=Os02t0696900-00
Chr02	irgsp1_rep	CDS	28653872	28653948	.	+	2	Parent=Os02t0696900-00
Chr02	irgsp1_rep	CDS	28655186	28655308	.	+	0	Parent=Os02t0696900-00
Chr02	irgsp1_rep	CDS	28655369	28655511	.	+	0	Parent=Os02t0696900-00
Chr02	irgsp1_rep	CDS	28657227	28657290	.	+	1	Parent=Os02t0696900-00
Chr02	irgsp1_rep	CDS	28657613	28657657	.	+	0	Parent=Os02t0696900-00
Chr02	irgsp1_rep	three_prime_UTR	28657658	28657883	.	+	.	Parent=Os02t0696900-00
Chr02	irgsp1_rep	mRNA	28669046	28672304	.	+	.	ID=Os02t0697200-01;Name=Os02t0697200-01;Locus_id=Os02g0697200;Note=Conserved hypothetical protein.;Transcript_evidence=AK059475 (DDBJ%2C Best hit),AK102993 (DDBJ%2C Best hit);ORF_evidence=B8AH73 (UniProt);NIAS_FLcDNA=001-028-E09,J033116E03;Expression=AK059475;TENOR=Os02t0697200-01;KEGG=Os02t0697200-01
Chr02	irgsp1_rep	five_prime_UTR	28669046	28669103	.	+	.	Parent=Os02t0697200-01
Chr02	irgsp1_rep	CDS	28669104	28669178	.	+	0	Parent=Os02t0697200-01
Chr02	irgsp1_rep	CDS	28669630	28669742	.	+	0	Parent=Os02t0697200-01
Chr02	irgsp1_rep	CDS	28670434	28670939	.	+	1	Parent=Os02t0697200-01
Chr02	irgsp1_rep	CDS	28671051	28671224	.	+	2	Parent=Os02t0697200-01
Chr02	irgsp1_rep	CDS	28671460	28671589	.	+	2	Parent=Os02t0697200-01
Chr02	irgsp1_rep	CDS	28671988	28672030	.	+	1	Parent=Os02t0697200-01
Chr02	irgsp1_rep	three_prime_UTR	28672031	28672304	.	+	.	Parent=Os02t0697200-01
Chr02	irgsp1_rep	mRNA	28673054	28676757	.	+	.	ID=Os02t0697300-01;Name=Os02t0697300-01;Locus_id=Os02g0697300;Note=ENTH/VHS domain containing protein.;Transcript_evidence=AK066018 (DDBJ%2C Best hit);ORF_evidence=B4FH61 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Cellular Component: intracellular (GO:0005622);InterPro=VHS (IPR002014),GAT (IPR004152),ENTH/VHS (IPR008942),Target of Myb protein 1 (IPR014645),VHS subgroup (IPR018205);NIAS_FLcDNA=J013047D24;Expression=AK066018;TENOR=Os02t0697300-01;KEGG=Os02t0697300-01
Chr02	irgsp1_rep	five_prime_UTR	28673054	28673210	.	+	.	Parent=Os02t0697300-01
Chr02	irgsp1_rep	five_prime_UTR	28673296	28673380	.	+	.	Parent=Os02t0697300-01
Chr02	irgsp1_rep	five_prime_UTR	28673748	28673760	.	+	.	Parent=Os02t0697300-01
Chr02	irgsp1_rep	CDS	28673761	28674279	.	+	0	Parent=Os02t0697300-01
Chr02	irgsp1_rep	CDS	28675085	28675330	.	+	0	Parent=Os02t0697300-01
Chr02	irgsp1_rep	CDS	28676155	28676568	.	+	0	Parent=Os02t0697300-01
Chr02	irgsp1_rep	three_prime_UTR	28676569	28676757	.	+	.	Parent=Os02t0697300-01
Chr02	irgsp1_rep	mRNA	28677205	28680864	.	-	.	ID=Os02t0697400-01;Name=Os02t0697400-01;Locus_id=Os02g0697400;RAP-DB Gene Symbol Synonym(s)=4CL2%2C Os4CL2;RAP-DB Gene Name Synonym(s)=4-COUMARATE:COENZYME A LIGASE 2%2C 4-Coumarate:coenzyme A ligase 2;CGSNL Gene Symbol=4CL2;CGSNL Gene Name=4-COUMARATE:COENZYME A LIGASE 2;Oryzabase Gene Symbol Synonym(s)=Os4CL2;Oryzabase Gene Name Synonym(s)=4-coumarate:coenzyme A ligase 2%2C 4-coumarate-CoA ligase 2;Note=4-coumarate:coenzyme A ligase%2C Flavonoid biosynthesis;Transcript_evidence=AK105636;ORF_evidence=Q42982;GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873),AMP-binding enzyme%2C C-terminal domain (IPR025110),AMP-binding%2C conserved site (IPR020845);NIAS_FLcDNA=001-200-D12;Manual Curation=May 25%2C 2017;Literature_PMID=23246835,21807887;Oryzabase=9681;Expression=AK105636;TENOR=Os02t0697400-01;KEGG=Os02t0697400-01 (EC:6.2.1.12)
Chr02	irgsp1_rep	five_prime_UTR	28680632	28680864	.	-	.	Parent=Os02t0697400-01
Chr02	irgsp1_rep	CDS	28679549	28680631	.	-	0	Parent=Os02t0697400-01
Chr02	irgsp1_rep	CDS	28678588	28678786	.	-	0	Parent=Os02t0697400-01
Chr02	irgsp1_rep	CDS	28678089	28678234	.	-	2	Parent=Os02t0697400-01
Chr02	irgsp1_rep	CDS	28677950	28678017	.	-	0	Parent=Os02t0697400-01
Chr02	irgsp1_rep	CDS	28677752	28677854	.	-	1	Parent=Os02t0697400-01
Chr02	irgsp1_rep	CDS	28677550	28677660	.	-	0	Parent=Os02t0697400-01
Chr02	irgsp1_rep	three_prime_UTR	28677205	28677549	.	-	.	Parent=Os02t0697400-01
Chr02	irgsp1_rep	mRNA	28679539	28680577	.	+	.	ID=Os02t0697450-00;Name=Os02t0697450-00;Locus_id=Os02g0697450;Note=Hypothetical gene.;Transcript_evidence=BT062457 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0697450-00;KEGG=Os02t0697450-00
Chr02	irgsp1_rep	five_prime_UTR	28679539	28679539	.	+	.	Parent=Os02t0697450-00
Chr02	irgsp1_rep	CDS	28679540	28680577	.	+	0	Parent=Os02t0697450-00
Chr02	irgsp1_rep	mRNA	28681631	28683888	.	-	.	ID=Os02t0697500-01;Name=Os02t0697500-01;Locus_id=Os02g0697500;Note=Similar to Selenium-binding protein-like.;Transcript_evidence=AK105680 (DDBJ%2C Best hit);ORF_evidence=Q6Z8F8 (UniProt);NIAS_FLcDNA=001-201-B04;Expression=AK105680;TENOR=Os02t0697500-01;KEGG=Os02t0697500-01
Chr02	irgsp1_rep	five_prime_UTR	28683826	28683888	.	-	.	Parent=Os02t0697500-01
Chr02	irgsp1_rep	CDS	28683650	28683825	.	-	0	Parent=Os02t0697500-01
Chr02	irgsp1_rep	CDS	28681884	28682061	.	-	1	Parent=Os02t0697500-01
Chr02	irgsp1_rep	three_prime_UTR	28681631	28681883	.	-	.	Parent=Os02t0697500-01
Chr02	irgsp1_rep	mRNA	28681681	28682850	.	-	.	ID=Os02t0697500-02;Name=Os02t0697500-02;Locus_id=Os02g0697500;Note=Hypothetical conserved gene.;Transcript_evidence=AK105891 (DDBJ%2C Best hit);ORF_evidence=A3AAD8 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-204-E07;Expression=AK105891;TENOR=Os02t0697500-02;KEGG=Os02t0697500-02
Chr02	irgsp1_rep	five_prime_UTR	28682850	28682850	.	-	.	Parent=Os02t0697500-02
Chr02	irgsp1_rep	CDS	28681884	28682849	.	-	0	Parent=Os02t0697500-02
Chr02	irgsp1_rep	three_prime_UTR	28681681	28681883	.	-	.	Parent=Os02t0697500-02
Chr02	irgsp1_rep	mRNA	28681884	28682890	.	+	.	ID=Os02t0697550-00;Name=Os02t0697550-00;Locus_id=Os02g0697550;Note=Hypothetical protein.;Transcript_evidence=BT085496 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0697550-00
Chr02	irgsp1_rep	CDS	28681884	28682890	.	+	0	Parent=Os02t0697550-00
Chr02	irgsp1_rep	mRNA	28689500	28694158	.	+	.	ID=Os02t0697600-01;Name=Os02t0697600-01;Locus_id=Os02g0697600;CGSNL Gene Name=AAA-ATPASE 4;Oryzabase Gene Name Synonym(s)=OsAAA-ATPase4%2C AAA-ATPase4;Note=ATPase%2C AAA-type%2C core domain containing protein.;Transcript_evidence=AK121757 (DDBJ%2C Best hit);ORF_evidence=B6U2J1 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase family AAA domain-containing protein 3%2C domain of unknown function DUF3523 (IPR021911);NIAS_FLcDNA=J033088G12;Oryzabase=23511;Expression=AK121757;TENOR=Os02t0697600-01;KEGG=Os02t0697600-01
Chr02	irgsp1_rep	five_prime_UTR	28689500	28689583	.	+	.	Parent=Os02t0697600-01
Chr02	irgsp1_rep	CDS	28689584	28689898	.	+	0	Parent=Os02t0697600-01
Chr02	irgsp1_rep	CDS	28689985	28690080	.	+	0	Parent=Os02t0697600-01
Chr02	irgsp1_rep	CDS	28690537	28690957	.	+	0	Parent=Os02t0697600-01
Chr02	irgsp1_rep	CDS	28691558	28691648	.	+	2	Parent=Os02t0697600-01
Chr02	irgsp1_rep	CDS	28691990	28692326	.	+	1	Parent=Os02t0697600-01
Chr02	irgsp1_rep	CDS	28692412	28692560	.	+	0	Parent=Os02t0697600-01
Chr02	irgsp1_rep	CDS	28693289	28693802	.	+	1	Parent=Os02t0697600-01
Chr02	irgsp1_rep	three_prime_UTR	28693803	28694158	.	+	.	Parent=Os02t0697600-01
Chr02	irgsp1_rep	mRNA	28690933	28694028	.	+	.	ID=Os02t0697600-02;Name=Os02t0697600-02;Locus_id=Os02g0697600;CGSNL Gene Name=AAA-ATPASE 4;Oryzabase Gene Name Synonym(s)=OsAAA-ATPase4%2C AAA-ATPase4;Note=Similar to ATPase family AAA domain-containing protein 3.;Transcript_evidence=AK060715 (DDBJ%2C Best hit);ORF_evidence=B6U2J1 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase family AAA domain-containing protein 3%2C domain of unknown function DUF3523 (IPR021911);NIAS_FLcDNA=001-031-D10;Oryzabase=23511;Expression=AK060715;TENOR=Os02t0697600-02;KEGG=Os02t0697600-02
Chr02	irgsp1_rep	CDS	28690933	28690957	.	+	0	Parent=Os02t0697600-02
Chr02	irgsp1_rep	CDS	28691558	28691648	.	+	2	Parent=Os02t0697600-02
Chr02	irgsp1_rep	CDS	28691990	28692326	.	+	1	Parent=Os02t0697600-02
Chr02	irgsp1_rep	CDS	28692412	28692560	.	+	0	Parent=Os02t0697600-02
Chr02	irgsp1_rep	CDS	28693289	28693802	.	+	1	Parent=Os02t0697600-02
Chr02	irgsp1_rep	three_prime_UTR	28693803	28694028	.	+	.	Parent=Os02t0697600-02
Chr02	irgsp1_rep	mRNA	28693279	28693814	.	-	.	ID=Os02t0697650-00;Name=Os02t0697650-00;Locus_id=Os02g0697650;Note=Hypothetical gene.;Transcript_evidence=EU963805 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0697650-00;KEGG=Os02t0697650-00
Chr02	irgsp1_rep	five_prime_UTR	28693813	28693814	.	-	.	Parent=Os02t0697650-00
Chr02	irgsp1_rep	CDS	28693591	28693812	.	-	0	Parent=Os02t0697650-00
Chr02	irgsp1_rep	three_prime_UTR	28693279	28693590	.	-	.	Parent=Os02t0697650-00
Chr02	irgsp1_rep	mRNA	28694770	28696426	.	-	.	ID=Os02t0697700-01;Name=Os02t0697700-01;Locus_id=Os02g0697700;Note=Conserved hypothetical protein.;Transcript_evidence=AK120209 (DDBJ%2C Best hit);ORF_evidence=A2X8L1 (UniProt);NIAS_FLcDNA=J013038N05;Expression=AK120209;TENOR=Os02t0697700-01;KEGG=Os02t0697700-01
Chr02	irgsp1_rep	five_prime_UTR	28696344	28696426	.	-	.	Parent=Os02t0697700-01
Chr02	irgsp1_rep	CDS	28696284	28696343	.	-	0	Parent=Os02t0697700-01
Chr02	irgsp1_rep	CDS	28695458	28695640	.	-	0	Parent=Os02t0697700-01
Chr02	irgsp1_rep	CDS	28694970	28695197	.	-	0	Parent=Os02t0697700-01
Chr02	irgsp1_rep	three_prime_UTR	28694770	28694969	.	-	.	Parent=Os02t0697700-01
Chr02	irgsp1_rep	mRNA	28696678	28700365	.	+	.	ID=Os02t0697800-01;Name=Os02t0697800-01;Locus_id=Os02g0697800;Note=Similar to Secretory carrier-associated membrane protein 5.;Transcript_evidence=AK106197 (DDBJ%2C Best hit);ORF_evidence=Q6Z8F5 (UniProt);GO=Biological Process: protein transport (GO:0015031),Cellular Component: integral to membrane (GO:0016021);InterPro=SCAMP (IPR007273);NIAS_FLcDNA=001-208-F01;TENOR=Os02t0697800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	28696678	28696838	.	+	.	Parent=Os02t0697800-01
Chr02	irgsp1_rep	CDS	28696839	28696892	.	+	0	Parent=Os02t0697800-01
Chr02	irgsp1_rep	CDS	28697035	28697187	.	+	0	Parent=Os02t0697800-01
Chr02	irgsp1_rep	CDS	28697317	28697379	.	+	0	Parent=Os02t0697800-01
Chr02	irgsp1_rep	CDS	28697495	28697528	.	+	0	Parent=Os02t0697800-01
Chr02	irgsp1_rep	CDS	28697664	28697786	.	+	2	Parent=Os02t0697800-01
Chr02	irgsp1_rep	CDS	28697907	28697969	.	+	2	Parent=Os02t0697800-01
Chr02	irgsp1_rep	CDS	28698162	28698255	.	+	2	Parent=Os02t0697800-01
Chr02	irgsp1_rep	CDS	28698556	28698601	.	+	1	Parent=Os02t0697800-01
Chr02	irgsp1_rep	CDS	28698687	28698754	.	+	0	Parent=Os02t0697800-01
Chr02	irgsp1_rep	CDS	28698867	28698915	.	+	1	Parent=Os02t0697800-01
Chr02	irgsp1_rep	CDS	28699100	28699165	.	+	0	Parent=Os02t0697800-01
Chr02	irgsp1_rep	CDS	28700087	28700119	.	+	0	Parent=Os02t0697800-01
Chr02	irgsp1_rep	three_prime_UTR	28700120	28700365	.	+	.	Parent=Os02t0697800-01
Chr02	irgsp1_rep	mRNA	28700889	28704229	.	-	.	ID=Os02t0697900-01;Name=Os02t0697900-01;Locus_id=Os02g0697900;Note=Hypothetical protein.;Transcript_evidence=AK119485 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-134-C05;Expression=AK119485;TENOR=Os02t0697900-01;KEGG=Os02t0697900-01
Chr02	irgsp1_rep	five_prime_UTR	28703439	28704229	.	-	.	Parent=Os02t0697900-01
Chr02	irgsp1_rep	CDS	28703416	28703438	.	-	0	Parent=Os02t0697900-01
Chr02	irgsp1_rep	CDS	28703267	28703338	.	-	1	Parent=Os02t0697900-01
Chr02	irgsp1_rep	CDS	28701181	28701478	.	-	1	Parent=Os02t0697900-01
Chr02	irgsp1_rep	three_prime_UTR	28700889	28701180	.	-	.	Parent=Os02t0697900-01
Chr02	irgsp1_rep	mRNA	28701864	28704269	.	+	.	ID=Os02t0698000-01;Name=Os02t0698000-01;Locus_id=Os02g0698000;Oryzabase Gene Symbol Synonym(s)=OsPrk%2C Prk;Oryzabase Gene Name Synonym(s)=Phosphoribulokinase%2C PRKase%2C OsPRKase;Note=Similar to Phosphoribulokinase%2C chloroplast precursor (EC 2.7.1.19) (Phosphopentokinase) (PRKase) (PRK).;Transcript_evidence=AK099461 (DDBJ%2C Best hit);ORF_evidence=Q8GRU9 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: metabolic process (GO:0008152),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphoribulokinase activity (GO:0008974),Molecular Function: kinase activity (GO:0016301);InterPro=Phosphoribulokinase (IPR006082),Phosphoribulokinase/uridine kinase (IPR006083);NIAS_FLcDNA=J013023E19;Oryzabase=14660;Expression=AK099461;TENOR=Os02t0698000-01;KEGG=Os02t0698000-01 (EC:2.7.1.19%2C EC:2.7.1.48)
Chr02	irgsp1_rep	five_prime_UTR	28701864	28702014	.	+	.	Parent=Os02t0698000-01
Chr02	irgsp1_rep	CDS	28702015	28702559	.	+	0	Parent=Os02t0698000-01
Chr02	irgsp1_rep	CDS	28702853	28702937	.	+	1	Parent=Os02t0698000-01
Chr02	irgsp1_rep	CDS	28703027	28703111	.	+	0	Parent=Os02t0698000-01
Chr02	irgsp1_rep	CDS	28703282	28703526	.	+	2	Parent=Os02t0698000-01
Chr02	irgsp1_rep	CDS	28703757	28704008	.	+	0	Parent=Os02t0698000-01
Chr02	irgsp1_rep	three_prime_UTR	28704009	28704269	.	+	.	Parent=Os02t0698000-01
Chr02	irgsp1_rep	mRNA	28701956	28704291	.	+	.	ID=Os02t0698000-02;Name=Os02t0698000-02;Locus_id=Os02g0698000;Oryzabase Gene Symbol Synonym(s)=OsPrk%2C Prk;Oryzabase Gene Name Synonym(s)=Phosphoribulokinase%2C PRKase%2C OsPRKase;Note=Similar to Phosphoribulokinase%2C chloroplast precursor (EC 2.7.1.19) (Phosphopentokinase) (PRKase) (PRK).;Transcript_evidence=AK066164 (DDBJ%2C Best hit);ORF_evidence=Q8GRU9 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: metabolic process (GO:0008152),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphoribulokinase activity (GO:0008974),Molecular Function: kinase activity (GO:0016301);InterPro=Phosphoribulokinase (IPR006082),Phosphoribulokinase/uridine kinase (IPR006083);NIAS_FLcDNA=J013056N04;Oryzabase=14660;Expression=AK066164;TENOR=Os02t0698000-02;KEGG=Os02t0698000-02 (EC:2.7.1.19%2C EC:2.7.1.48)
Chr02	irgsp1_rep	five_prime_UTR	28701956	28702014	.	+	.	Parent=Os02t0698000-02
Chr02	irgsp1_rep	CDS	28702015	28702559	.	+	0	Parent=Os02t0698000-02
Chr02	irgsp1_rep	CDS	28702853	28702937	.	+	1	Parent=Os02t0698000-02
Chr02	irgsp1_rep	CDS	28703027	28703111	.	+	0	Parent=Os02t0698000-02
Chr02	irgsp1_rep	CDS	28703282	28703526	.	+	2	Parent=Os02t0698000-02
Chr02	irgsp1_rep	CDS	28703757	28704008	.	+	0	Parent=Os02t0698000-02
Chr02	irgsp1_rep	three_prime_UTR	28704009	28704291	.	+	.	Parent=Os02t0698000-02
Chr02	irgsp1_rep	mRNA	28701996	28704271	.	+	.	ID=Os02t0698000-03;Name=Os02t0698000-03;Locus_id=Os02g0698000;Oryzabase Gene Symbol Synonym(s)=OsPrk%2C Prk;Oryzabase Gene Name Synonym(s)=Phosphoribulokinase%2C PRKase%2C OsPRKase;Note=Similar to Phosphoribulokinase%2C chloroplast precursor (EC 2.7.1.19) (Phosphopentokinase) (PRKase) (PRK).;Transcript_evidence=AK104857 (DDBJ%2C Best hit);ORF_evidence=Q8GRU9 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: metabolic process (GO:0008152),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphoribulokinase activity (GO:0008974),Molecular Function: kinase activity (GO:0016301);InterPro=Phosphoribulokinase (IPR006082),Phosphoribulokinase/uridine kinase (IPR006083);NIAS_FLcDNA=001-043-C08;Oryzabase=14660;Expression=AK104857;TENOR=Os02t0698000-03;KEGG=Os02t0698000-03 (EC:2.7.1.19%2C EC:2.7.1.48)
Chr02	irgsp1_rep	five_prime_UTR	28701996	28702014	.	+	.	Parent=Os02t0698000-03
Chr02	irgsp1_rep	CDS	28702015	28702559	.	+	0	Parent=Os02t0698000-03
Chr02	irgsp1_rep	CDS	28702853	28702937	.	+	1	Parent=Os02t0698000-03
Chr02	irgsp1_rep	CDS	28703027	28703111	.	+	0	Parent=Os02t0698000-03
Chr02	irgsp1_rep	CDS	28703282	28703526	.	+	2	Parent=Os02t0698000-03
Chr02	irgsp1_rep	CDS	28703757	28704008	.	+	0	Parent=Os02t0698000-03
Chr02	irgsp1_rep	three_prime_UTR	28704009	28704271	.	+	.	Parent=Os02t0698000-03
Chr02	irgsp1_rep	mRNA	28704731	28706214	.	-	.	ID=Os02t0698100-01;Name=Os02t0698100-01;Locus_id=Os02g0698100;Note=Galactose oxidase%2C central domain containing protein.;Transcript_evidence=AK060614 (DDBJ%2C Best hit);ORF_evidence=A3AAE3 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174);NIAS_FLcDNA=001-025-G09;Expression=AK060614;TENOR=Os02t0698100-01;KEGG=Os02t0698100-01
Chr02	irgsp1_rep	five_prime_UTR	28706190	28706214	.	-	.	Parent=Os02t0698100-01
Chr02	irgsp1_rep	CDS	28705041	28706189	.	-	0	Parent=Os02t0698100-01
Chr02	irgsp1_rep	three_prime_UTR	28704731	28705040	.	-	.	Parent=Os02t0698100-01
Chr02	irgsp1_rep	mRNA	28726783	28730931	.	+	.	ID=Os02t0698800-01;Name=Os02t0698800-01;Locus_id=Os02g0698800;CGSNL Gene Symbol=WRKY66;CGSNL Gene Name=WRKY GENE 66;Oryzabase Gene Symbol Synonym(s)=OsWRKY66;Oryzabase Gene Name Synonym(s)=Rice WRKY gene66;Note=WRKY transcription factor 66.;Transcript_evidence=AK073100 (DDBJ%2C Best hit);ORF_evidence=Q7XNU9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);NIAS_FLcDNA=J033016K09;Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6581;Expression=AK073100;TENOR=Os02t0698800-01;KEGG=Os02t0698800-01
Chr02	irgsp1_rep	five_prime_UTR	28726783	28726837	.	+	.	Parent=Os02t0698800-01
Chr02	irgsp1_rep	CDS	28726838	28727472	.	+	0	Parent=Os02t0698800-01
Chr02	irgsp1_rep	CDS	28728104	28728244	.	+	1	Parent=Os02t0698800-01
Chr02	irgsp1_rep	CDS	28730133	28730877	.	+	1	Parent=Os02t0698800-01
Chr02	irgsp1_rep	three_prime_UTR	28730878	28730931	.	+	.	Parent=Os02t0698800-01
Chr02	irgsp1_rep	mRNA	28749597	28752795	.	+	.	ID=Os02t0699000-01;Name=Os02t0699000-01;Locus_id=Os02g0699000;RAP-DB Gene Symbol Synonym(s)=OsNPF7.2;CGSNL Gene Symbol=NPF7.2;CGSNL Gene Name=NRT1/PTR FAMILY 7.2;Oryzabase Gene Symbol Synonym(s)=OsNPF7.2;Oryzabase Gene Name Synonym(s)=nitrate transporter 1/peptide transporter family gene 7.2%2C NRT1/PTR family 7.2;Note=Tonoplast localized low-affinity nitrate transporter%2C Nitrate accumulation and homeostasis;Transcript_evidence=AK109931;ORF_evidence=Q6Z8E5;GO=Biological Process: transport (GO:0006810),Molecular Function: transporter activity (GO:0005215),Cellular Component: membrane (GO:0016020);InterPro=Proton-dependent oligopeptide transporter family (IPR000109),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=002-152-B06;Manual Curation=November 16%2C 2016;Literature_PMID=27826301;Oryzabase=21455;Expression=AK109931;TENOR=Os02t0699000-01;KEGG=Os02t0699000-01
Chr02	irgsp1_rep	five_prime_UTR	28749597	28749743	.	+	.	Parent=Os02t0699000-01
Chr02	irgsp1_rep	CDS	28749744	28749797	.	+	0	Parent=Os02t0699000-01
Chr02	irgsp1_rep	CDS	28750943	28751036	.	+	0	Parent=Os02t0699000-01
Chr02	irgsp1_rep	CDS	28751157	28752733	.	+	2	Parent=Os02t0699000-01
Chr02	irgsp1_rep	three_prime_UTR	28752734	28752795	.	+	.	Parent=Os02t0699000-01
Chr02	irgsp1_rep	mRNA	28751920	28752721	.	-	.	ID=Os02t0699150-00;Name=Os02t0699150-00;Locus_id=Os02g0699150;Note=Hypothetical protein.;Transcript_evidence=EU955776 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0699150-00
Chr02	irgsp1_rep	CDS	28752167	28752721	.	-	0	Parent=Os02t0699150-00
Chr02	irgsp1_rep	three_prime_UTR	28751920	28752166	.	-	.	Parent=Os02t0699150-00
Chr02	irgsp1_rep	mRNA	28755172	28758544	.	+	.	ID=Os02t0699300-01;Name=Os02t0699300-01;Locus_id=Os02g0699300;CGSNL Gene Symbol=ARFB1D;CGSNL Gene Name=ADP-RIBOSYLATION FACTOR B1D;Oryzabase Gene Symbol Synonym(s)=OsARFB1d%2C ARFB1d;Oryzabase Gene Name Synonym(s)=ADP-ribosylation factor B1d;Note=Similar to ADP-ribosylation factor-like protein.;Transcript_evidence=AK067761 (DDBJ%2C Best hit);ORF_evidence=NP_001150662.1 (RefSeq);GO=Biological Process: small GTPase mediated signal transduction (GO:0007264),Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C ARF/SAR type (IPR006689),Small GTPase superfamily%2C ARF type (IPR024156);NIAS_FLcDNA=J013119O04;Oryzabase=21010;Expression=AK067761;TENOR=Os02t0699300-01;KEGG=Os02t0699300-01
Chr02	irgsp1_rep	five_prime_UTR	28755172	28755375	.	+	.	Parent=Os02t0699300-01
Chr02	irgsp1_rep	CDS	28755376	28755432	.	+	0	Parent=Os02t0699300-01
Chr02	irgsp1_rep	CDS	28755552	28755642	.	+	0	Parent=Os02t0699300-01
Chr02	irgsp1_rep	CDS	28756022	28756248	.	+	2	Parent=Os02t0699300-01
Chr02	irgsp1_rep	three_prime_UTR	28756249	28757193	.	+	.	Parent=Os02t0699300-01
Chr02	irgsp1_rep	three_prime_UTR	28757274	28757339	.	+	.	Parent=Os02t0699300-01
Chr02	irgsp1_rep	three_prime_UTR	28758006	28758544	.	+	.	Parent=Os02t0699300-01
Chr02	irgsp1_rep	mRNA	28755551	28758166	.	-	.	ID=Os02t0699350-00;Name=Os02t0699350-00;Locus_id=Os02g0699350;Note=Non-protein coding transcript.;Transcript_evidence=BT016330 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0699350-00
Chr02	irgsp1_rep	exon	28758020	28758166	.	-	.	Parent=Os02t0699350-00
Chr02	irgsp1_rep	exon	28757230	28757353	.	-	.	Parent=Os02t0699350-00
Chr02	irgsp1_rep	exon	28756016	28756149	.	-	.	Parent=Os02t0699350-00
Chr02	irgsp1_rep	exon	28755551	28755633	.	-	.	Parent=Os02t0699350-00
Chr02	irgsp1_rep	mRNA	28763385	28767194	.	+	.	ID=Os02t0699400-00;Name=Os02t0699400-00;Locus_id=Os02g0699400;Note=RelA/SpoT protein domain containing protein.;Transcript_evidence=AK354688 (DDBJ);ORF_evidence=Q6Z8E2 (UniProt);GO=Biological Process: guanosine tetraphosphate metabolic process (GO:0015969);InterPro=RelA/SpoT protein (IPR004811),RelA/SpoT (IPR007685);TENOR=Os02t0699400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	28763385	28763737	.	+	0	Parent=Os02t0699400-00
Chr02	irgsp1_rep	CDS	28763854	28763920	.	+	1	Parent=Os02t0699400-00
Chr02	irgsp1_rep	CDS	28764100	28764233	.	+	0	Parent=Os02t0699400-00
Chr02	irgsp1_rep	CDS	28764530	28764596	.	+	1	Parent=Os02t0699400-00
Chr02	irgsp1_rep	CDS	28764888	28764950	.	+	0	Parent=Os02t0699400-00
Chr02	irgsp1_rep	CDS	28765355	28765593	.	+	0	Parent=Os02t0699400-00
Chr02	irgsp1_rep	CDS	28765683	28765812	.	+	1	Parent=Os02t0699400-00
Chr02	irgsp1_rep	CDS	28765891	28765983	.	+	0	Parent=Os02t0699400-00
Chr02	irgsp1_rep	CDS	28766233	28766436	.	+	0	Parent=Os02t0699400-00
Chr02	irgsp1_rep	CDS	28766623	28766907	.	+	0	Parent=Os02t0699400-00
Chr02	irgsp1_rep	three_prime_UTR	28766908	28766951	.	+	.	Parent=Os02t0699400-00
Chr02	irgsp1_rep	three_prime_UTR	28767007	28767194	.	+	.	Parent=Os02t0699400-00
Chr02	irgsp1_rep	mRNA	28768752	28769773	.	+	.	ID=Os02t0699433-00;Name=Os02t0699433-00;Locus_id=Os02g0699433;Note=Hypothetical conserved gene.;Transcript_evidence=BT084191 (DDBJ);ORF_evidence=Q7XNU5 (UniProt);TENOR=Os02t0699433-00;KEGG=Os02t0699433-00
Chr02	irgsp1_rep	five_prime_UTR	28768752	28769024	.	+	.	Parent=Os02t0699433-00
Chr02	irgsp1_rep	CDS	28769025	28769039	.	+	0	Parent=Os02t0699433-00
Chr02	irgsp1_rep	CDS	28769234	28769773	.	+	0	Parent=Os02t0699433-00
Chr02	irgsp1_rep	mRNA	28770828	28771373	.	+	.	ID=Os02t0699466-00;Name=Os02t0699466-00;Locus_id=Os02g0699466;Note=Conserved hypothetical protein.;Transcript_evidence=CT835328 (DDBJ%2C Best hit);ORF_evidence=Q6Z8E1 (UniProt);TENOR=Os02t0699466-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	28770828	28770884	.	+	.	Parent=Os02t0699466-00
Chr02	irgsp1_rep	CDS	28770885	28771373	.	+	0	Parent=Os02t0699466-00
Chr02	irgsp1_rep	mRNA	28771385	28772070	.	+	.	ID=Os02t0699500-01;Name=Os02t0699500-01;Locus_id=Os02g0699500;Note=Conserved hypothetical protein.;Transcript_evidence=AK062786 (DDBJ%2C Best hit);ORF_evidence=Q6Z8E1 (UniProt);NIAS_FLcDNA=001-107-B09;Expression=AK062786;TENOR=Os02t0699500-01;KEGG=Os02t0699500-01
Chr02	irgsp1_rep	five_prime_UTR	28771385	28771385	.	+	.	Parent=Os02t0699500-01
Chr02	irgsp1_rep	CDS	28771386	28771469	.	+	0	Parent=Os02t0699500-01
Chr02	irgsp1_rep	CDS	28771560	28771631	.	+	0	Parent=Os02t0699500-01
Chr02	irgsp1_rep	three_prime_UTR	28771632	28772070	.	+	.	Parent=Os02t0699500-01
Chr02	irgsp1_rep	mRNA	28772935	28774108	.	+	.	ID=Os02t0699600-01;Name=Os02t0699600-01;Locus_id=Os02g0699600;Note=Similar to 60S ribosomal protein L12.;Transcript_evidence=AK121709 (DDBJ%2C Best hit);ORF_evidence=Q7XNU2 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L11 (IPR000911),Ribosomal protein L11%2C C-terminal (IPR020783),Ribosomal protein L11%2C N-terminal (IPR020784),Ribosomal protein L11%2C conserved site (IPR020785);NIAS_FLcDNA=J033076B01;Expression=AK121709;TENOR=Os02t0699600-01;KEGG=Os02t0699600-01
Chr02	irgsp1_rep	five_prime_UTR	28772935	28773018	.	+	.	Parent=Os02t0699600-01
Chr02	irgsp1_rep	CDS	28773019	28773519	.	+	0	Parent=Os02t0699600-01
Chr02	irgsp1_rep	three_prime_UTR	28773520	28773523	.	+	.	Parent=Os02t0699600-01
Chr02	irgsp1_rep	three_prime_UTR	28773868	28774108	.	+	.	Parent=Os02t0699600-01
Chr02	irgsp1_rep	mRNA	28779974	28784586	.	-	.	ID=Os02t0699700-01;Name=Os02t0699700-01;Locus_id=Os02g0699700;CGSNL Gene Symbol=TOP2;CGSNL Gene Name=TOPOISOMERASE 2;Oryzabase Gene Symbol Synonym(s)=OsTOP2;Oryzabase Gene Name Synonym(s)=topoisomerase II%2C type II topoisomerase%2C topoisomerase 2;Note=Similar to DNA topoisomerase II.;Transcript_evidence=AK072471 (DDBJ%2C Best hit);ORF_evidence=A3AAF2 (UniProt);GO=Biological Process: DNA metabolic process (GO:0006259),Biological Process: DNA topological change (GO:0006265),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: Chromosome (GO:0005694),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA topoisomerase (ATP-hydrolyzing) activity (GO:0003918),Molecular Function: ATP binding (GO:0005524);InterPro=DNA topoisomerase II%2C eukaryotic-type (IPR001154),DNA topoisomerase%2C type IIA%2C subunit B/N-terminal (IPR001241),DNA topoisomerase%2C type IIA%2C subunit A/C-terminal (IPR002205),ATPase-like%2C ATP-binding domain (IPR003594),DNA topoisomerase%2C type IIA%2C subunit B%2C domain 2 (IPR013506),DNA topoisomerase%2C type IIA%2C subunit A/ C-terminal%2C alpha-beta (IPR013758),DNA topoisomerase%2C type IIA%2C subunit B/N-terminal%2C alpha-beta (IPR013759),DNA topoisomerase%2C type IIA%2C central (IPR013760),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),DNA topoisomerase%2C type IIA%2C conserved site (IPR018522),Ribosomal protein S5 domain 2-type fold (IPR020568),Arginine repressor%2C C-terminal (IPR020899);NIAS_FLcDNA=J023116G18;Oryzabase=21302;TENOR=Os02t0699700-01
Chr02	irgsp1_rep	five_prime_UTR	28784499	28784586	.	-	.	Parent=Os02t0699700-01
Chr02	irgsp1_rep	CDS	28783932	28784498	.	-	0	Parent=Os02t0699700-01
Chr02	irgsp1_rep	CDS	28783151	28783449	.	-	0	Parent=Os02t0699700-01
Chr02	irgsp1_rep	CDS	28782988	28783054	.	-	1	Parent=Os02t0699700-01
Chr02	irgsp1_rep	CDS	28782642	28782912	.	-	0	Parent=Os02t0699700-01
Chr02	irgsp1_rep	CDS	28782357	28782556	.	-	2	Parent=Os02t0699700-01
Chr02	irgsp1_rep	CDS	28782060	28782269	.	-	0	Parent=Os02t0699700-01
Chr02	irgsp1_rep	CDS	28781870	28781983	.	-	0	Parent=Os02t0699700-01
Chr02	irgsp1_rep	CDS	28781581	28781697	.	-	0	Parent=Os02t0699700-01
Chr02	irgsp1_rep	CDS	28781305	28781469	.	-	0	Parent=Os02t0699700-01
Chr02	irgsp1_rep	CDS	28781041	28781226	.	-	0	Parent=Os02t0699700-01
Chr02	irgsp1_rep	CDS	28780798	28780953	.	-	0	Parent=Os02t0699700-01
Chr02	irgsp1_rep	CDS	28780551	28780684	.	-	0	Parent=Os02t0699700-01
Chr02	irgsp1_rep	CDS	28780292	28780460	.	-	1	Parent=Os02t0699700-01
Chr02	irgsp1_rep	CDS	28779974	28780187	.	-	0	Parent=Os02t0699700-01
Chr02	irgsp1_rep	mRNA	28777426	28780893	.	-	.	ID=Os02t0699700-02;Name=Os02t0699700-02;Locus_id=Os02g0699700;CGSNL Gene Symbol=TOP2;CGSNL Gene Name=TOPOISOMERASE 2;Oryzabase Gene Symbol Synonym(s)=OsTOP2;Oryzabase Gene Name Synonym(s)=topoisomerase II%2C type II topoisomerase%2C topoisomerase 2;Note=Similar to DNA topoisomerase 2.;Transcript_evidence=AK063335 (DDBJ%2C Best hit);ORF_evidence=A3AAF2 (UniProt);GO=Biological Process: DNA metabolic process (GO:0006259),Biological Process: DNA topological change (GO:0006265),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: Chromosome (GO:0005694),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA topoisomerase (ATP-hydrolyzing) activity (GO:0003918),Molecular Function: ATP binding (GO:0005524);InterPro=DNA topoisomerase II%2C eukaryotic-type (IPR001154),DNA topoisomerase%2C type IIA%2C subunit A/C-terminal (IPR002205),DNA topoisomerase%2C type IIA%2C subunit A%2C alpha-helical (IPR013757),DNA topoisomerase%2C type IIA%2C subunit A/ C-terminal%2C alpha-beta (IPR013758),DNA topoisomerase%2C type IIA%2C central (IPR013760),Arginine repressor%2C C-terminal (IPR020899);NIAS_FLcDNA=001-114-A06;Oryzabase=21302;Expression=AK063335;TENOR=Os02t0699700-02;KEGG=Os02t0699700-02 (EC:5.99.1.3)
Chr02	irgsp1_rep	CDS	28780798	28780893	.	-	0	Parent=Os02t0699700-02
Chr02	irgsp1_rep	CDS	28780551	28780684	.	-	0	Parent=Os02t0699700-02
Chr02	irgsp1_rep	CDS	28780292	28780460	.	-	1	Parent=Os02t0699700-02
Chr02	irgsp1_rep	CDS	28779933	28780187	.	-	0	Parent=Os02t0699700-02
Chr02	irgsp1_rep	CDS	28779670	28779856	.	-	0	Parent=Os02t0699700-02
Chr02	irgsp1_rep	CDS	28779548	28779597	.	-	2	Parent=Os02t0699700-02
Chr02	irgsp1_rep	CDS	28779049	28779468	.	-	0	Parent=Os02t0699700-02
Chr02	irgsp1_rep	CDS	28778823	28778967	.	-	0	Parent=Os02t0699700-02
Chr02	irgsp1_rep	CDS	28778680	28778741	.	-	2	Parent=Os02t0699700-02
Chr02	irgsp1_rep	CDS	28778517	28778600	.	-	0	Parent=Os02t0699700-02
Chr02	irgsp1_rep	CDS	28778336	28778432	.	-	0	Parent=Os02t0699700-02
Chr02	irgsp1_rep	CDS	28777628	28778250	.	-	2	Parent=Os02t0699700-02
Chr02	irgsp1_rep	three_prime_UTR	28777426	28777627	.	-	.	Parent=Os02t0699700-02
Chr02	irgsp1_rep	mRNA	28788408	28790000	.	-	.	ID=Os02t0699800-01;Name=Os02t0699800-01;Locus_id=Os02g0699800;Note=Conserved hypothetical protein.;Transcript_evidence=AK108578 (DDBJ%2C Best hit);ORF_evidence=Q6Z8D8 (UniProt);NIAS_FLcDNA=002-145-G10;TENOR=Os02t0699800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	28789843	28790000	.	-	.	Parent=Os02t0699800-01
Chr02	irgsp1_rep	five_prime_UTR	28789300	28789385	.	-	.	Parent=Os02t0699800-01
Chr02	irgsp1_rep	CDS	28788892	28789299	.	-	0	Parent=Os02t0699800-01
Chr02	irgsp1_rep	three_prime_UTR	28788408	28788891	.	-	.	Parent=Os02t0699800-01
Chr02	irgsp1_rep	mRNA	28791379	28792577	.	+	.	ID=Os02t0699824-00;Name=Os02t0699824-00;Locus_id=Os02g0699824;Note=Conserved hypothetical protein.;Transcript_evidence=AK368238 (DDBJ);ORF_evidence=XP_002447038.1 (RefSeq);TENOR=Os02t0699824-00
Chr02	irgsp1_rep	CDS	28791379	28791669	.	+	0	Parent=Os02t0699824-00
Chr02	irgsp1_rep	three_prime_UTR	28791670	28792577	.	+	.	Parent=Os02t0699824-00
Chr02	irgsp1_rep	mRNA	28791415	28792661	.	-	.	ID=Os02t0699836-00;Name=Os02t0699836-00;Locus_id=Os02g0699836;Note=Hypothetical protein.;Transcript_evidence=tplb0032g07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0699836-00
Chr02	irgsp1_rep	five_prime_UTR	28792509	28792661	.	-	.	Parent=Os02t0699836-00
Chr02	irgsp1_rep	CDS	28792221	28792508	.	-	0	Parent=Os02t0699836-00
Chr02	irgsp1_rep	three_prime_UTR	28791415	28792220	.	-	.	Parent=Os02t0699836-00
Chr02	irgsp1_rep	mRNA	28793941	28795051	.	-	.	ID=Os02t0699850-01;Name=Os02t0699850-01;Locus_id=Os02g0699850;Note=Hypothetical gene.;Transcript_evidence=AK069704 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023027J11;Expression=AK069704;TENOR=Os02t0699850-01;KEGG=Os02t0699850-01
Chr02	irgsp1_rep	five_prime_UTR	28795050	28795051	.	-	.	Parent=Os02t0699850-01
Chr02	irgsp1_rep	CDS	28794444	28795049	.	-	0	Parent=Os02t0699850-01
Chr02	irgsp1_rep	three_prime_UTR	28793941	28794443	.	-	.	Parent=Os02t0699850-01
Chr02	irgsp1_rep	mRNA	28794171	28795262	.	+	.	ID=Os02t0699900-01;Name=Os02t0699900-01;Locus_id=Os02g0699900;Note=Bromodomain transcription factor containing protein.;Transcript_evidence=AK070100 (DDBJ%2C Best hit);ORF_evidence=B8AH79 (UniProt);GO=Molecular Function: DNA binding (GO:0003677);InterPro=Bromodomain transcription factor (IPR006565),Histone-fold (IPR009072);NIAS_FLcDNA=J023041F15;Expression=AK070100;TENOR=Os02t0699900-01;KEGG=Os02t0699900-01
Chr02	irgsp1_rep	five_prime_UTR	28794171	28794205	.	+	.	Parent=Os02t0699900-01
Chr02	irgsp1_rep	CDS	28794206	28794925	.	+	0	Parent=Os02t0699900-01
Chr02	irgsp1_rep	three_prime_UTR	28794926	28795262	.	+	.	Parent=Os02t0699900-01
Chr02	irgsp1_rep	mRNA	28795583	28800683	.	-	.	ID=Os02t0700000-01;Name=Os02t0700000-01;Locus_id=Os02g0700000;Note=EF-HAND 1 domain containing protein.;Transcript_evidence=AK100709 (DDBJ%2C Best hit);ORF_evidence=A2X8M4 (UniProt);InterPro=PWWP (IPR000313);NIAS_FLcDNA=J023115E12;Expression=AK100709;TENOR=Os02t0700000-01;KEGG=Os02t0700000-01
Chr02	irgsp1_rep	five_prime_UTR	28800258	28800683	.	-	.	Parent=Os02t0700000-01
Chr02	irgsp1_rep	CDS	28800043	28800257	.	-	0	Parent=Os02t0700000-01
Chr02	irgsp1_rep	CDS	28799061	28799281	.	-	1	Parent=Os02t0700000-01
Chr02	irgsp1_rep	CDS	28798256	28798942	.	-	2	Parent=Os02t0700000-01
Chr02	irgsp1_rep	CDS	28796261	28797621	.	-	2	Parent=Os02t0700000-01
Chr02	irgsp1_rep	three_prime_UTR	28795583	28796260	.	-	.	Parent=Os02t0700000-01
Chr02	irgsp1_rep	mRNA	28802911	28805716	.	+	.	ID=Os02t0700100-01;Name=Os02t0700100-01;Locus_id=Os02g0700100;Oryzabase Gene Symbol Synonym(s)=OsWD40-51%2C OsCDC20.1%2C WD40-51%2C CDC20.1;Oryzabase Gene Name Synonym(s)=cell division cycle protein 20.1;Note=Similar to WD-repeat protein.;Transcript_evidence=AK102954 (DDBJ%2C Best hit);ORF_evidence=NP_001151581.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J033115E13;Oryzabase=10732;Expression=AK102954;TENOR=Os02t0700100-01;KEGG=Os02t0700100-01
Chr02	irgsp1_rep	five_prime_UTR	28802911	28803223	.	+	.	Parent=Os02t0700100-01
Chr02	irgsp1_rep	CDS	28803224	28803361	.	+	0	Parent=Os02t0700100-01
Chr02	irgsp1_rep	CDS	28803451	28803717	.	+	0	Parent=Os02t0700100-01
Chr02	irgsp1_rep	CDS	28803806	28804075	.	+	0	Parent=Os02t0700100-01
Chr02	irgsp1_rep	CDS	28804163	28804753	.	+	0	Parent=Os02t0700100-01
Chr02	irgsp1_rep	CDS	28804843	28804986	.	+	0	Parent=Os02t0700100-01
Chr02	irgsp1_rep	three_prime_UTR	28804987	28805055	.	+	.	Parent=Os02t0700100-01
Chr02	irgsp1_rep	three_prime_UTR	28805166	28805243	.	+	.	Parent=Os02t0700100-01
Chr02	irgsp1_rep	three_prime_UTR	28805326	28805716	.	+	.	Parent=Os02t0700100-01
Chr02	irgsp1_rep	mRNA	28808920	28811960	.	+	.	ID=Os02t0700300-01;Name=Os02t0700300-01;Locus_id=Os02g0700300;CGSNL Gene Symbol=DLN66;CGSNL Gene Name=DLN REPRESSOR 66;Oryzabase Gene Symbol Synonym(s)=OsDLN66;Oryzabase Gene Name Synonym(s)=DLN repressor 66%2C DLN motif protein 66;Note=Similar to Phosphate starvation response regulator-like protein.;Transcript_evidence=AK059448 (DDBJ%2C Best hit);ORF_evidence=Q01HU6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=001-028-A10;Oryzabase=23175;Expression=AK059448;TENOR=Os02t0700300-01;KEGG=Os02t0700300-01
Chr02	irgsp1_rep	five_prime_UTR	28808920	28809350	.	+	.	Parent=Os02t0700300-01
Chr02	irgsp1_rep	CDS	28809351	28809516	.	+	0	Parent=Os02t0700300-01
Chr02	irgsp1_rep	CDS	28809960	28810036	.	+	2	Parent=Os02t0700300-01
Chr02	irgsp1_rep	CDS	28810149	28810206	.	+	0	Parent=Os02t0700300-01
Chr02	irgsp1_rep	CDS	28810341	28810416	.	+	2	Parent=Os02t0700300-01
Chr02	irgsp1_rep	CDS	28811166	28811235	.	+	1	Parent=Os02t0700300-01
Chr02	irgsp1_rep	CDS	28811335	28811754	.	+	0	Parent=Os02t0700300-01
Chr02	irgsp1_rep	three_prime_UTR	28811755	28811960	.	+	.	Parent=Os02t0700300-01
Chr02	irgsp1_rep	mRNA	28811253	28811918	.	-	.	ID=Os02t0700350-00;Name=Os02t0700350-00;Locus_id=Os02g0700350;Note=Non-protein coding transcript.;Transcript_evidence=EU943848 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0700350-00
Chr02	irgsp1_rep	exon	28811253	28811918	.	-	.	Parent=Os02t0700350-00
Chr02	irgsp1_rep	mRNA	28812685	28814078	.	-	.	ID=Os02t0700400-01;Name=Os02t0700400-01;Locus_id=Os02g0700400;RAP-DB Gene Symbol Synonym(s)=AOX1C%2C OsAOX1c;RAP-DB Gene Name Synonym(s)=ALTERNATIVE OXIDASE 1C%2C alternative oxidase-1c;CGSNL Gene Symbol=AOX1C;CGSNL Gene Name=ALTERNATIVE OXIDASE 1C;Oryzabase Gene Symbol Synonym(s)=OsAOX1c;Oryzabase Gene Name Synonym(s)=alternative oxidase-1c%2C Os-ubiquinol oxidase 1%2C ubiquinol oxidase 1%2C ubiquinol oxidase 1c;Note=Homodimeric diiron-carboxylate protein%2C Cyanide-resistant respiration in mitochondria%2C Reactive oxygen species (ROS) scavenging;Transcript_evidence=AB074005 (DDBJ);ORF_evidence=Q8W855 (UniProt);GO=Biological Process: respiratory gaseous exchange (GO:0007585),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: mitochondrial envelope (GO:0005740);InterPro=Alternative oxidase (IPR002680);Manual Curation=June 5%2C 2009;Literature_PMID=17086445,14503001,16457775;Oryzabase=8231;TENOR=Os02t0700400-01
Chr02	irgsp1_rep	five_prime_UTR	28814046	28814078	.	-	.	Parent=Os02t0700400-01
Chr02	irgsp1_rep	CDS	28813686	28814045	.	-	0	Parent=Os02t0700400-01
Chr02	irgsp1_rep	CDS	28813431	28813559	.	-	0	Parent=Os02t0700400-01
Chr02	irgsp1_rep	CDS	28812852	28813340	.	-	0	Parent=Os02t0700400-01
Chr02	irgsp1_rep	CDS	28812702	28812761	.	-	0	Parent=Os02t0700400-01
Chr02	irgsp1_rep	three_prime_UTR	28812685	28812701	.	-	.	Parent=Os02t0700400-01
Chr02	irgsp1_rep	mRNA	28815466	28818691	.	-	.	ID=Os02t0700500-01;Name=Os02t0700500-01;Locus_id=Os02g0700500;RAP-DB Gene Symbol Synonym(s)=OsPUT1%2C PUT1;RAP-DB Gene Name Synonym(s)=POLYAMINE UPTAKE TRANSPORTER 1%2C POLYAMINE UPTAKE TRANSPORTER1%2C polyamine uptake transporter 1;CGSNL Gene Symbol=PUT1;CGSNL Gene Name=POLYAMINE UPTAKE TRANSPORTER 1;Oryzabase Gene Symbol Synonym(s)=OsPUT1%2C PUT%2C OsLAT1;Oryzabase Gene Name Synonym(s)=PA uptake transporter 1%2C polyamine uptake transporter 1%2C Polyamine Uptake Transporter1;Note=Polyamine uptake transporter%2C High-affinity spermidine transporter%2C Import of spermidine transported via phloem%2C Polyamine uptake;Transcript_evidence=AK068055;ORF_evidence=Q6Z8D0;GO=Biological Process: amino acid transmembrane transport (GO:0003333),Molecular Function: amino acid transmembrane transporter activity (GO:0015171),Cellular Component: membrane (GO:0016020);InterPro=Amino acid/polyamine transporter I (IPR002293);NIAS_FLcDNA=J013132E09;Manual Curation=May 30%2C 2017;Literature_PMID=21796369;Oryzabase=9991;Expression=AK068055;TENOR=Os02t0700500-01;KEGG=Os02t0700500-01;Subcellular location=cytoplasm (GO:0005737)
Chr02	irgsp1_rep	five_prime_UTR	28818617	28818691	.	-	.	Parent=Os02t0700500-01
Chr02	irgsp1_rep	CDS	28818494	28818616	.	-	0	Parent=Os02t0700500-01
Chr02	irgsp1_rep	CDS	28815887	28817359	.	-	0	Parent=Os02t0700500-01
Chr02	irgsp1_rep	three_prime_UTR	28815466	28815886	.	-	.	Parent=Os02t0700500-01
Chr02	irgsp1_rep	mRNA	28820864	28826606	.	+	.	ID=Os02t0700600-01;Name=Os02t0700600-01;Locus_id=Os02g0700600;CGSNL Gene Symbol=CDKF%3B4;CGSNL Gene Name=CYCLIN-DEPENDENT KINASE F%3B4;Oryzabase Gene Symbol Synonym(s)=CDKF%3B4%2C Orysa%3BCDKF%3B4;Note=Similar to GAMYB-binding protein.;Transcript_evidence=AK100056 (DDBJ%2C Best hit);ORF_evidence=Q6Z8C8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013158B11;Oryzabase=13298;Expression=AK100056;TENOR=Os02t0700600-01;KEGG=Os02t0700600-01
Chr02	irgsp1_rep	five_prime_UTR	28820864	28821142	.	+	.	Parent=Os02t0700600-01
Chr02	irgsp1_rep	five_prime_UTR	28822250	28822509	.	+	.	Parent=Os02t0700600-01
Chr02	irgsp1_rep	five_prime_UTR	28822597	28822652	.	+	.	Parent=Os02t0700600-01
Chr02	irgsp1_rep	five_prime_UTR	28822759	28823068	.	+	.	Parent=Os02t0700600-01
Chr02	irgsp1_rep	CDS	28823069	28823076	.	+	0	Parent=Os02t0700600-01
Chr02	irgsp1_rep	CDS	28823143	28823221	.	+	1	Parent=Os02t0700600-01
Chr02	irgsp1_rep	CDS	28823333	28823401	.	+	0	Parent=Os02t0700600-01
Chr02	irgsp1_rep	CDS	28823472	28823561	.	+	0	Parent=Os02t0700600-01
Chr02	irgsp1_rep	CDS	28823639	28823777	.	+	0	Parent=Os02t0700600-01
Chr02	irgsp1_rep	CDS	28824030	28824132	.	+	2	Parent=Os02t0700600-01
Chr02	irgsp1_rep	CDS	28824215	28824267	.	+	1	Parent=Os02t0700600-01
Chr02	irgsp1_rep	CDS	28824356	28824422	.	+	2	Parent=Os02t0700600-01
Chr02	irgsp1_rep	CDS	28824594	28824702	.	+	1	Parent=Os02t0700600-01
Chr02	irgsp1_rep	CDS	28825095	28825160	.	+	0	Parent=Os02t0700600-01
Chr02	irgsp1_rep	CDS	28825247	28825315	.	+	0	Parent=Os02t0700600-01
Chr02	irgsp1_rep	CDS	28825400	28825466	.	+	0	Parent=Os02t0700600-01
Chr02	irgsp1_rep	CDS	28825545	28825661	.	+	2	Parent=Os02t0700600-01
Chr02	irgsp1_rep	CDS	28825743	28825851	.	+	2	Parent=Os02t0700600-01
Chr02	irgsp1_rep	CDS	28825938	28826172	.	+	1	Parent=Os02t0700600-01
Chr02	irgsp1_rep	three_prime_UTR	28826173	28826606	.	+	.	Parent=Os02t0700600-01
Chr02	irgsp1_rep	mRNA	28820868	28824134	.	+	.	ID=Os02t0700600-02;Name=Os02t0700600-02;Locus_id=Os02g0700600;CGSNL Gene Symbol=CDKF%3B4;CGSNL Gene Name=CYCLIN-DEPENDENT KINASE F%3B4;Oryzabase Gene Symbol Synonym(s)=CDKF%3B4%2C Orysa%3BCDKF%3B4;Note=Similar to Cyclin-dependent kinase F-4.;Transcript_evidence=AK101989 (DDBJ%2C Best hit);ORF_evidence=B7EPX3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033079D11;Oryzabase=13298;TENOR=Os02t0700600-02
Chr02	irgsp1_rep	five_prime_UTR	28820868	28821142	.	+	.	Parent=Os02t0700600-02
Chr02	irgsp1_rep	five_prime_UTR	28822250	28822509	.	+	.	Parent=Os02t0700600-02
Chr02	irgsp1_rep	five_prime_UTR	28822597	28822652	.	+	.	Parent=Os02t0700600-02
Chr02	irgsp1_rep	five_prime_UTR	28822759	28823068	.	+	.	Parent=Os02t0700600-02
Chr02	irgsp1_rep	CDS	28823069	28823076	.	+	0	Parent=Os02t0700600-02
Chr02	irgsp1_rep	CDS	28823143	28823221	.	+	1	Parent=Os02t0700600-02
Chr02	irgsp1_rep	CDS	28823333	28823401	.	+	0	Parent=Os02t0700600-02
Chr02	irgsp1_rep	CDS	28823472	28823561	.	+	0	Parent=Os02t0700600-02
Chr02	irgsp1_rep	CDS	28823639	28823777	.	+	0	Parent=Os02t0700600-02
Chr02	irgsp1_rep	CDS	28824030	28824134	.	+	2	Parent=Os02t0700600-02
Chr02	irgsp1_rep	mRNA	28823225	28826571	.	+	.	ID=Os02t0700600-03;Name=Os02t0700600-03;Locus_id=Os02g0700600;CGSNL Gene Symbol=CDKF%3B4;CGSNL Gene Name=CYCLIN-DEPENDENT KINASE F%3B4;Oryzabase Gene Symbol Synonym(s)=CDKF%3B4%2C Orysa%3BCDKF%3B4;Note=Similar to cDNA clone:J013158B11%2C full insert sequence.;Transcript_evidence=AK100966 (DDBJ%2C Best hit);ORF_evidence=B7EPX3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023142H24;Oryzabase=13298;TENOR=Os02t0700600-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	28823225	28823347	.	+	.	Parent=Os02t0700600-03
Chr02	irgsp1_rep	CDS	28823348	28823401	.	+	0	Parent=Os02t0700600-03
Chr02	irgsp1_rep	CDS	28823472	28823561	.	+	0	Parent=Os02t0700600-03
Chr02	irgsp1_rep	CDS	28823639	28823777	.	+	0	Parent=Os02t0700600-03
Chr02	irgsp1_rep	CDS	28824030	28824132	.	+	2	Parent=Os02t0700600-03
Chr02	irgsp1_rep	CDS	28824215	28824267	.	+	1	Parent=Os02t0700600-03
Chr02	irgsp1_rep	CDS	28824356	28824422	.	+	2	Parent=Os02t0700600-03
Chr02	irgsp1_rep	CDS	28824594	28824702	.	+	1	Parent=Os02t0700600-03
Chr02	irgsp1_rep	CDS	28825095	28825160	.	+	0	Parent=Os02t0700600-03
Chr02	irgsp1_rep	CDS	28825247	28825315	.	+	0	Parent=Os02t0700600-03
Chr02	irgsp1_rep	CDS	28825400	28825466	.	+	0	Parent=Os02t0700600-03
Chr02	irgsp1_rep	CDS	28825545	28825661	.	+	2	Parent=Os02t0700600-03
Chr02	irgsp1_rep	CDS	28825743	28825851	.	+	2	Parent=Os02t0700600-03
Chr02	irgsp1_rep	CDS	28825938	28826172	.	+	1	Parent=Os02t0700600-03
Chr02	irgsp1_rep	three_prime_UTR	28826173	28826571	.	+	.	Parent=Os02t0700600-03
Chr02	irgsp1_rep	mRNA	28823534	28826417	.	+	.	ID=Os02t0700600-04;Name=Os02t0700600-04;Locus_id=Os02g0700600;CGSNL Gene Symbol=CDKF%3B4;CGSNL Gene Name=CYCLIN-DEPENDENT KINASE F%3B4;Oryzabase Gene Symbol Synonym(s)=CDKF%3B4%2C Orysa%3BCDKF%3B4;Note=Similar to Cyclin-dependent kinase F-4.;Transcript_evidence=AK111985 (DDBJ%2C Best hit);ORF_evidence=B7EPX3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-025-B03;Oryzabase=13298;Expression=AK111985;TENOR=Os02t0700600-04;KEGG=Os02t0700600-04
Chr02	irgsp1_rep	five_prime_UTR	28823534	28823534	.	+	.	Parent=Os02t0700600-04
Chr02	irgsp1_rep	CDS	28823535	28823561	.	+	0	Parent=Os02t0700600-04
Chr02	irgsp1_rep	CDS	28823639	28823777	.	+	0	Parent=Os02t0700600-04
Chr02	irgsp1_rep	CDS	28824030	28824132	.	+	2	Parent=Os02t0700600-04
Chr02	irgsp1_rep	CDS	28824215	28824267	.	+	1	Parent=Os02t0700600-04
Chr02	irgsp1_rep	CDS	28824356	28824422	.	+	2	Parent=Os02t0700600-04
Chr02	irgsp1_rep	CDS	28824594	28824702	.	+	1	Parent=Os02t0700600-04
Chr02	irgsp1_rep	CDS	28825095	28825160	.	+	0	Parent=Os02t0700600-04
Chr02	irgsp1_rep	CDS	28825247	28825315	.	+	0	Parent=Os02t0700600-04
Chr02	irgsp1_rep	CDS	28825400	28825466	.	+	0	Parent=Os02t0700600-04
Chr02	irgsp1_rep	CDS	28825545	28825661	.	+	2	Parent=Os02t0700600-04
Chr02	irgsp1_rep	CDS	28825743	28825851	.	+	2	Parent=Os02t0700600-04
Chr02	irgsp1_rep	CDS	28825938	28826172	.	+	1	Parent=Os02t0700600-04
Chr02	irgsp1_rep	three_prime_UTR	28826173	28826417	.	+	.	Parent=Os02t0700600-04
Chr02	irgsp1_rep	mRNA	28826255	28826570	.	+	.	ID=Os02t0700600-05;Name=Os02t0700600-05;Locus_id=Os02g0700600;CGSNL Gene Symbol=CDKF%3B4;CGSNL Gene Name=CYCLIN-DEPENDENT KINASE F%3B4;Oryzabase Gene Symbol Synonym(s)=CDKF%3B4%2C Orysa%3BCDKF%3B4;Note=Non-protein coding transcript.;Transcript_evidence=AK059173 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-023-F03;Oryzabase=13298;TENOR=Os02t0700600-05
Chr02	irgsp1_rep	exon	28826255	28826570	.	+	.	Parent=Os02t0700600-05
Chr02	irgsp1_rep	mRNA	28824205	28825292	.	-	.	ID=Os02t0700650-00;Name=Os02t0700650-00;Locus_id=Os02g0700650;Note=Non-protein coding transcript.;Transcript_evidence=BT086873 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0700650-00
Chr02	irgsp1_rep	exon	28825239	28825292	.	-	.	Parent=Os02t0700650-00
Chr02	irgsp1_rep	exon	28825111	28825151	.	-	.	Parent=Os02t0700650-00
Chr02	irgsp1_rep	exon	28824587	28824714	.	-	.	Parent=Os02t0700650-00
Chr02	irgsp1_rep	exon	28824350	28824412	.	-	.	Parent=Os02t0700650-00
Chr02	irgsp1_rep	exon	28824205	28824258	.	-	.	Parent=Os02t0700650-00
Chr02	irgsp1_rep	mRNA	28826739	28833632	.	-	.	ID=Os02t0700700-01;Name=Os02t0700700-01;Locus_id=Os02g0700700;CGSNL Gene Symbol=BRXL2;CGSNL Gene Name=BREVIS RADIX-LIKE 2;Oryzabase Gene Symbol Synonym(s)=OsBRXL2;Oryzabase Gene Name Synonym(s)=Brevis radix-like 2%2C BRX-like 2;Note=Disease resistance/zinc finger/Chromosome condensation-like region domain containing protein.;Transcript_evidence=AK101598 (DDBJ%2C Best hit);ORF_evidence=Q6ZIK7 (UniProt);InterPro=Brevis radix-like domain (IPR013591);NIAS_FLcDNA=J033051H11;Oryzabase=8928;Expression=AK101598;TENOR=Os02t0700700-01;KEGG=Os02t0700700-01
Chr02	irgsp1_rep	five_prime_UTR	28833252	28833632	.	-	.	Parent=Os02t0700700-01
Chr02	irgsp1_rep	five_prime_UTR	28832643	28832770	.	-	.	Parent=Os02t0700700-01
Chr02	irgsp1_rep	five_prime_UTR	28831035	28831079	.	-	.	Parent=Os02t0700700-01
Chr02	irgsp1_rep	CDS	28830936	28831034	.	-	0	Parent=Os02t0700700-01
Chr02	irgsp1_rep	CDS	28828003	28828478	.	-	0	Parent=Os02t0700700-01
Chr02	irgsp1_rep	CDS	28827769	28827910	.	-	1	Parent=Os02t0700700-01
Chr02	irgsp1_rep	CDS	28827257	28827696	.	-	0	Parent=Os02t0700700-01
Chr02	irgsp1_rep	CDS	28827048	28827126	.	-	1	Parent=Os02t0700700-01
Chr02	irgsp1_rep	three_prime_UTR	28826739	28827047	.	-	.	Parent=Os02t0700700-01
Chr02	irgsp1_rep	mRNA	28827249	28828491	.	+	.	ID=Os02t0700901-00;Name=Os02t0700901-00;Locus_id=Os02g0700901;Note=Hypothetical gene.;Transcript_evidence=BT084039 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0700901-00
Chr02	irgsp1_rep	five_prime_UTR	28827249	28827941	.	+	.	Parent=Os02t0700901-00
Chr02	irgsp1_rep	CDS	28827942	28828491	.	+	0	Parent=Os02t0700901-00
Chr02	irgsp1_rep	mRNA	28863274	28866997	.	-	.	ID=Os02t0701300-01;Name=Os02t0701300-01;Locus_id=Os02g0701300;RAP-DB Gene Symbol Synonym(s)=GS2%2C OsGRF4%2C GRF4%2C GS2/OsGRF4%2C PT2%2C GLW2;RAP-DB Gene Name Synonym(s)=GRAIN SIZE 2%2C growth-regulating factor4%2C Growth-Regulating Factor 4%2C GRAIN SIZE ON CHROMOSOME 2%2C PANICLE TRAITS 2%2C grain length and width 2;CGSNL Gene Symbol=GS2;CGSNL Gene Name=GRAIN SIZE 2;Oryzabase Gene Symbol Synonym(s)=OsGRF4%2C GRF4%2C GS2/OsGRF4%2C PT2%2C GLW2%2C GS2/GL2%2C LGS1%2C OsLGS1;Oryzabase Gene Name Synonym(s)=growth-regulating factor4%2C Growth-Regulating Factor 4%2C GRAIN SIZE ON CHROMOSOME 2%2C PANICLE TRAITS 2%2C grain length and width 2%2C Large Grain Size 1;Note=Growth-regulating factor%2C Regulation of grain shape and panicle length%2C Negative regulation of seed shattering;Transcript_evidence=AK063983;ORF_evidence=Q6ZIK5;GO=Biological Process: transcription%2C DNA-templated (GO:0006351),Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Biological Process: developmental process (GO:0032502),Molecular Function: ATP binding (GO:0005524),Cellular Component: nucleus (GO:0005634);InterPro=Growth-regulating factor (IPR031137),Glutamine-Leucine-Glutamine%2C QLQ (IPR014978),WRC domain (IPR014977);NIAS_FLcDNA=001-124-D07;Manual Curation=November 1%2C 2016;Literature_PMID=27107174,26936408;Oryzabase=10279;TENOR=Os02t0701300-01
Chr02	irgsp1_rep	five_prime_UTR	28866911	28866997	.	-	.	Parent=Os02t0701300-01
Chr02	irgsp1_rep	CDS	28866801	28866910	.	-	0	Parent=Os02t0701300-01
Chr02	irgsp1_rep	CDS	28866474	28866703	.	-	1	Parent=Os02t0701300-01
Chr02	irgsp1_rep	CDS	28865459	28865870	.	-	2	Parent=Os02t0701300-01
Chr02	irgsp1_rep	CDS	28863637	28864061	.	-	1	Parent=Os02t0701300-01
Chr02	irgsp1_rep	CDS	28863525	28863532	.	-	2	Parent=Os02t0701300-01
Chr02	irgsp1_rep	three_prime_UTR	28863274	28863524	.	-	.	Parent=Os02t0701300-01
Chr02	irgsp1_rep	mRNA	28894065	28897418	.	+	.	ID=Os02t0701600-01;Name=Os02t0701600-01;Locus_id=Os02g0701600;Oryzabase Gene Symbol Synonym(s)=OsVTE4%2C OsgammaTMT%2C gammaTMT;Oryzabase Gene Name Synonym(s)=VITAMIN E DEFICIENT 4%2C gamma tocopherol methyltransferase;Note=Similar to Tocopherol O-methyltransferase%2C chloroplast precursor (EC 2.1.1.95) (Gamma-tocopherol methyltransferase).;Transcript_evidence=AK061746 (DDBJ%2C Best hit),AK071763 (DDBJ%2C Best hit);ORF_evidence=Q1PBH7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Methyltransferase type 11 (IPR013216);NIAS_FLcDNA=001-038-F12,J023110C23;Oryzabase=18217;Expression=AK061746;TENOR=Os02t0701600-01;KEGG=Os02t0701600-01 (EC:2.1.1.95)
Chr02	irgsp1_rep	five_prime_UTR	28894065	28894084	.	+	.	Parent=Os02t0701600-01
Chr02	irgsp1_rep	CDS	28894085	28894478	.	+	0	Parent=Os02t0701600-01
Chr02	irgsp1_rep	CDS	28895639	28895808	.	+	2	Parent=Os02t0701600-01
Chr02	irgsp1_rep	CDS	28895969	28896073	.	+	0	Parent=Os02t0701600-01
Chr02	irgsp1_rep	CDS	28896566	28896769	.	+	0	Parent=Os02t0701600-01
Chr02	irgsp1_rep	CDS	28896911	28897013	.	+	0	Parent=Os02t0701600-01
Chr02	irgsp1_rep	CDS	28897114	28897226	.	+	2	Parent=Os02t0701600-01
Chr02	irgsp1_rep	three_prime_UTR	28897227	28897418	.	+	.	Parent=Os02t0701600-01
Chr02	irgsp1_rep	mRNA	28899535	28900900	.	-	.	ID=Os02t0701700-01;Name=Os02t0701700-01;Locus_id=Os02g0701700;Note=Conserved hypothetical protein.;Transcript_evidence=AK068212 (DDBJ%2C Best hit);ORF_evidence=Q6ZHJ9 (UniProt);NIAS_FLcDNA=J013146D16;TENOR=Os02t0701700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	28899887	28900900	.	-	.	Parent=Os02t0701700-01
Chr02	irgsp1_rep	CDS	28899632	28899886	.	-	0	Parent=Os02t0701700-01
Chr02	irgsp1_rep	three_prime_UTR	28899535	28899631	.	-	.	Parent=Os02t0701700-01
Chr02	irgsp1_rep	mRNA	28914744	28916631	.	+	.	ID=Os02t0701900-01;Name=Os02t0701900-01;Locus_id=Os02g0701900;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK060640 (DDBJ%2C Best hit);ORF_evidence=B6TX51 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);NIAS_FLcDNA=001-027-E08;Expression=AK060640;TENOR=Os02t0701900-01;KEGG=Os02t0701900-01 (EC:1.1.1.102)
Chr02	irgsp1_rep	five_prime_UTR	28914744	28914924	.	+	.	Parent=Os02t0701900-01
Chr02	irgsp1_rep	CDS	28914925	28915458	.	+	0	Parent=Os02t0701900-01
Chr02	irgsp1_rep	CDS	28915573	28915720	.	+	0	Parent=Os02t0701900-01
Chr02	irgsp1_rep	CDS	28916236	28916537	.	+	2	Parent=Os02t0701900-01
Chr02	irgsp1_rep	three_prime_UTR	28916538	28916631	.	+	.	Parent=Os02t0701900-01
Chr02	irgsp1_rep	mRNA	28917800	28920757	.	+	.	ID=Os02t0702000-01;Name=Os02t0702000-01;Locus_id=Os02g0702000;RAP-DB Gene Symbol Synonym(s)=OSOTP51;RAP-DB Gene Name Synonym(s)=organelle transcript processing 51;Oryzabase Gene Symbol Synonym(s)=OSOTP 51%2C OSOTP51%2C OTP51;Oryzabase Gene Name Synonym(s)=organelle transcript processing 51;Note=Pentatricopeptide repeats protein%2C Splicing of chloroplast mRNA;Transcript_evidence=JN613018;ORF_evidence=Q6ZHJ5;GO=Molecular Function: endonuclease activity (GO:0004519),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical domain superfamily (IPR011990),Homing endonuclease (IPR027434),Homing endonuclease%2C LAGLIDADG (IPR004860),Pentatricopeptide repeat (IPR002885);Manual Curation=September 4%2C 2018;Literature_PMID=22353560;Oryzabase=17975;TENOR=Os02t0702000-00;KEGG=Os02t0702000-00
Chr02	irgsp1_rep	CDS	28917800	28918303	.	+	0	Parent=Os02t0702000-01
Chr02	irgsp1_rep	CDS	28918889	28920757	.	+	0	Parent=Os02t0702000-01
Chr02	irgsp1_rep	mRNA	28921176	28921792	.	-	.	ID=Os02t0702100-01;Name=Os02t0702100-01;Locus_id=Os02g0702100;Note=Similar to transcription factor GT-3b.;Transcript_evidence=AK108297 (DDBJ%2C Best hit);ORF_evidence=NP_001150134.1 (RefSeq);NIAS_FLcDNA=002-141-E07;Expression=AK108297;TENOR=Os02t0702100-01;KEGG=Os02t0702100-01
Chr02	irgsp1_rep	five_prime_UTR	28921654	28921792	.	-	.	Parent=Os02t0702100-01
Chr02	irgsp1_rep	CDS	28921324	28921653	.	-	0	Parent=Os02t0702100-01
Chr02	irgsp1_rep	three_prime_UTR	28921176	28921323	.	-	.	Parent=Os02t0702100-01
Chr02	irgsp1_rep	mRNA	28928706	28932005	.	-	.	ID=Os02t0702300-01;Name=Os02t0702300-01;Locus_id=Os02g0702300;Note=Conserved hypothetical protein.;Transcript_evidence=AK100068 (DDBJ%2C Best hit);ORF_evidence=NP_001175364.1 (RefSeq);NIAS_FLcDNA=J013163B17;TENOR=Os02t0702300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	28929433	28932005	.	-	.	Parent=Os02t0702300-01
Chr02	irgsp1_rep	CDS	28929322	28929432	.	-	0	Parent=Os02t0702300-01
Chr02	irgsp1_rep	three_prime_UTR	28928706	28929321	.	-	.	Parent=Os02t0702300-01
Chr02	irgsp1_rep	mRNA	28930563	28931207	.	+	.	ID=Os02t0702351-00;Name=Os02t0702351-00;Locus_id=Os02g0702351;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q655Q7 (UniProt);TENOR=Os02t0702351-00;KEGG=Os02t0702351-00
Chr02	irgsp1_rep	CDS	28930563	28930663	.	+	0	Parent=Os02t0702351-00
Chr02	irgsp1_rep	CDS	28930708	28930923	.	+	1	Parent=Os02t0702351-00
Chr02	irgsp1_rep	CDS	28930973	28931207	.	+	1	Parent=Os02t0702351-00
Chr02	irgsp1_rep	mRNA	28935436	28938889	.	+	.	ID=Os02t0702400-01;Name=Os02t0702400-01;Locus_id=Os02g0702400;Note=Pectinacetylesterase family protein.;Transcript_evidence=AK068668 (DDBJ%2C Best hit);ORF_evidence=B6TXR7 (UniProt);InterPro=Pectinacetylesterase (IPR004963);NIAS_FLcDNA=J013158P10;Expression=AK068668;TENOR=Os02t0702400-01;KEGG=Os02t0702400-01
Chr02	irgsp1_rep	five_prime_UTR	28935436	28935647	.	+	.	Parent=Os02t0702400-01
Chr02	irgsp1_rep	five_prime_UTR	28935736	28935736	.	+	.	Parent=Os02t0702400-01
Chr02	irgsp1_rep	CDS	28935737	28935857	.	+	0	Parent=Os02t0702400-01
Chr02	irgsp1_rep	CDS	28935995	28936077	.	+	2	Parent=Os02t0702400-01
Chr02	irgsp1_rep	CDS	28936183	28936312	.	+	0	Parent=Os02t0702400-01
Chr02	irgsp1_rep	CDS	28936651	28936730	.	+	2	Parent=Os02t0702400-01
Chr02	irgsp1_rep	CDS	28936836	28936922	.	+	0	Parent=Os02t0702400-01
Chr02	irgsp1_rep	CDS	28936991	28937115	.	+	0	Parent=Os02t0702400-01
Chr02	irgsp1_rep	CDS	28937307	28937367	.	+	1	Parent=Os02t0702400-01
Chr02	irgsp1_rep	CDS	28937599	28937652	.	+	0	Parent=Os02t0702400-01
Chr02	irgsp1_rep	CDS	28937745	28937822	.	+	0	Parent=Os02t0702400-01
Chr02	irgsp1_rep	CDS	28938018	28938123	.	+	0	Parent=Os02t0702400-01
Chr02	irgsp1_rep	CDS	28938224	28938369	.	+	2	Parent=Os02t0702400-01
Chr02	irgsp1_rep	CDS	28938498	28938620	.	+	0	Parent=Os02t0702400-01
Chr02	irgsp1_rep	three_prime_UTR	28938621	28938889	.	+	.	Parent=Os02t0702400-01
Chr02	irgsp1_rep	mRNA	28939788	28947843	.	-	.	ID=Os02t0702500-01;Name=Os02t0702500-01;Locus_id=Os02g0702500;Note=Similar to B0403H10-OSIGBa0105A11.22 protein.;Transcript_evidence=AK066639 (DDBJ%2C Best hit);ORF_evidence=Q01HS6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013073M11;TENOR=Os02t0702500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	28947682	28947843	.	-	0	Parent=Os02t0702500-01
Chr02	irgsp1_rep	CDS	28946690	28946889	.	-	0	Parent=Os02t0702500-01
Chr02	irgsp1_rep	CDS	28945902	28946055	.	-	1	Parent=Os02t0702500-01
Chr02	irgsp1_rep	CDS	28945707	28945816	.	-	0	Parent=Os02t0702500-01
Chr02	irgsp1_rep	CDS	28945556	28945625	.	-	1	Parent=Os02t0702500-01
Chr02	irgsp1_rep	CDS	28945383	28945465	.	-	0	Parent=Os02t0702500-01
Chr02	irgsp1_rep	CDS	28945220	28945301	.	-	1	Parent=Os02t0702500-01
Chr02	irgsp1_rep	CDS	28945082	28945122	.	-	0	Parent=Os02t0702500-01
Chr02	irgsp1_rep	CDS	28944793	28944915	.	-	1	Parent=Os02t0702500-01
Chr02	irgsp1_rep	CDS	28944449	28944593	.	-	1	Parent=Os02t0702500-01
Chr02	irgsp1_rep	CDS	28944242	28944350	.	-	0	Parent=Os02t0702500-01
Chr02	irgsp1_rep	CDS	28943634	28943722	.	-	2	Parent=Os02t0702500-01
Chr02	irgsp1_rep	CDS	28943316	28943390	.	-	0	Parent=Os02t0702500-01
Chr02	irgsp1_rep	CDS	28942687	28942761	.	-	0	Parent=Os02t0702500-01
Chr02	irgsp1_rep	CDS	28941794	28942599	.	-	0	Parent=Os02t0702500-01
Chr02	irgsp1_rep	CDS	28941563	28941718	.	-	1	Parent=Os02t0702500-01
Chr02	irgsp1_rep	CDS	28940710	28940969	.	-	1	Parent=Os02t0702500-01
Chr02	irgsp1_rep	CDS	28940093	28940172	.	-	2	Parent=Os02t0702500-01
Chr02	irgsp1_rep	three_prime_UTR	28939788	28940092	.	-	.	Parent=Os02t0702500-01
Chr02	irgsp1_rep	mRNA	28939808	28943683	.	-	.	ID=Os02t0702500-02;Name=Os02t0702500-02;Locus_id=Os02g0702500;Note=Similar to B0403H10-OSIGBa0105A11.22 protein.;Transcript_evidence=AK104341 (DDBJ%2C Best hit);ORF_evidence=B9F1Z6 (UniProt);NIAS_FLcDNA=001-033-H04;Expression=AK104341;TENOR=Os02t0702500-02;KEGG=Os02t0702500-02
Chr02	irgsp1_rep	five_prime_UTR	28943682	28943683	.	-	.	Parent=Os02t0702500-02
Chr02	irgsp1_rep	CDS	28943634	28943681	.	-	0	Parent=Os02t0702500-02
Chr02	irgsp1_rep	CDS	28943316	28943390	.	-	0	Parent=Os02t0702500-02
Chr02	irgsp1_rep	CDS	28942684	28942761	.	-	0	Parent=Os02t0702500-02
Chr02	irgsp1_rep	CDS	28941794	28942599	.	-	0	Parent=Os02t0702500-02
Chr02	irgsp1_rep	CDS	28941563	28941718	.	-	1	Parent=Os02t0702500-02
Chr02	irgsp1_rep	CDS	28940710	28940969	.	-	1	Parent=Os02t0702500-02
Chr02	irgsp1_rep	CDS	28940093	28940172	.	-	2	Parent=Os02t0702500-02
Chr02	irgsp1_rep	three_prime_UTR	28939808	28940092	.	-	.	Parent=Os02t0702500-02
Chr02	irgsp1_rep	mRNA	28939808	28942537	.	-	.	ID=Os02t0702500-03;Name=Os02t0702500-03;Locus_id=Os02g0702500;Note=Hypothetical conserved gene.;Transcript_evidence=AK099652 (DDBJ%2C Best hit);ORF_evidence=B9F1Z6 (UniProt);NIAS_FLcDNA=J013065G02;TENOR=Os02t0702500-03
Chr02	irgsp1_rep	five_prime_UTR	28942537	28942537	.	-	.	Parent=Os02t0702500-03
Chr02	irgsp1_rep	CDS	28941794	28942536	.	-	0	Parent=Os02t0702500-03
Chr02	irgsp1_rep	CDS	28941563	28941718	.	-	1	Parent=Os02t0702500-03
Chr02	irgsp1_rep	CDS	28940710	28940969	.	-	1	Parent=Os02t0702500-03
Chr02	irgsp1_rep	CDS	28940093	28940172	.	-	2	Parent=Os02t0702500-03
Chr02	irgsp1_rep	three_prime_UTR	28939808	28940092	.	-	.	Parent=Os02t0702500-03
Chr02	irgsp1_rep	mRNA	28939808	28942129	.	-	.	ID=Os02t0702500-04;Name=Os02t0702500-04;Locus_id=Os02g0702500;Note=Conserved hypothetical protein.;Transcript_evidence=AK066790 (DDBJ%2C Best hit);ORF_evidence=Q6YVK3 (UniProt);NIAS_FLcDNA=J013087B19;TENOR=Os02t0702500-04
Chr02	irgsp1_rep	five_prime_UTR	28942129	28942129	.	-	.	Parent=Os02t0702500-04
Chr02	irgsp1_rep	CDS	28941794	28942128	.	-	0	Parent=Os02t0702500-04
Chr02	irgsp1_rep	CDS	28941563	28941718	.	-	1	Parent=Os02t0702500-04
Chr02	irgsp1_rep	CDS	28940710	28940969	.	-	1	Parent=Os02t0702500-04
Chr02	irgsp1_rep	CDS	28940093	28940172	.	-	2	Parent=Os02t0702500-04
Chr02	irgsp1_rep	three_prime_UTR	28939808	28940092	.	-	.	Parent=Os02t0702500-04
Chr02	irgsp1_rep	mRNA	28953036	28958936	.	-	.	ID=Os02t0702600-01;Name=Os02t0702600-01;Locus_id=Os02g0702600;CGSNL Gene Symbol=ROPGEF4;CGSNL Gene Name=ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 4;Oryzabase Gene Symbol Synonym(s)=Os RopGEF4%2C OsRopGEF4%2C RopGEF4;Oryzabase Gene Name Synonym(s)=GEF for ROP 4%2C guanine nucleotide exchange factor for Rop 4%2C Rop-specific GEF4%2C Rop-specific guanine nucleotide exchange factor 4;Note=Rop nucleotide exchanger%2C PRONE domain containing protein.;Transcript_evidence=AK102549 (DDBJ%2C Best hit);ORF_evidence=NP_174446.2 (RefSeq);GO=Molecular Function: Rho guanyl-nucleotide exchange factor activity (GO:0005089);InterPro=Plant specific Rop nucleotide exchanger%2C PRONE (IPR005512);NIAS_FLcDNA=J033097A05;Oryzabase=11446;Expression=AK102549;TENOR=Os02t0702600-01;KEGG=Os02t0702600-01
Chr02	irgsp1_rep	five_prime_UTR	28958845	28958936	.	-	.	Parent=Os02t0702600-01
Chr02	irgsp1_rep	five_prime_UTR	28958630	28958723	.	-	.	Parent=Os02t0702600-01
Chr02	irgsp1_rep	five_prime_UTR	28957472	28957511	.	-	.	Parent=Os02t0702600-01
Chr02	irgsp1_rep	CDS	28957396	28957471	.	-	0	Parent=Os02t0702600-01
Chr02	irgsp1_rep	CDS	28955047	28955460	.	-	2	Parent=Os02t0702600-01
Chr02	irgsp1_rep	CDS	28954745	28954899	.	-	2	Parent=Os02t0702600-01
Chr02	irgsp1_rep	CDS	28954603	28954677	.	-	0	Parent=Os02t0702600-01
Chr02	irgsp1_rep	CDS	28954152	28954427	.	-	0	Parent=Os02t0702600-01
Chr02	irgsp1_rep	CDS	28953685	28954032	.	-	0	Parent=Os02t0702600-01
Chr02	irgsp1_rep	CDS	28953240	28953527	.	-	0	Parent=Os02t0702600-01
Chr02	irgsp1_rep	three_prime_UTR	28953036	28953239	.	-	.	Parent=Os02t0702600-01
Chr02	irgsp1_rep	mRNA	28953068	28957981	.	-	.	ID=Os02t0702600-02;Name=Os02t0702600-02;Locus_id=Os02g0702600;CGSNL Gene Symbol=ROPGEF4;CGSNL Gene Name=ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 4;Oryzabase Gene Symbol Synonym(s)=Os RopGEF4%2C OsRopGEF4%2C RopGEF4;Oryzabase Gene Name Synonym(s)=GEF for ROP 4%2C guanine nucleotide exchange factor for Rop 4%2C Rop-specific GEF4%2C Rop-specific guanine nucleotide exchange factor 4;Note=Rop nucleotide exchanger%2C PRONE domain containing protein.;Transcript_evidence=AK102962 (DDBJ%2C Best hit);ORF_evidence=NP_174446.2 (RefSeq);GO=Molecular Function: Rho guanyl-nucleotide exchange factor activity (GO:0005089);InterPro=Plant specific Rop nucleotide exchanger%2C PRONE (IPR005512);NIAS_FLcDNA=J033115I05;Oryzabase=11446;Expression=AK102962;TENOR=Os02t0702600-02;KEGG=Os02t0702600-02
Chr02	irgsp1_rep	five_prime_UTR	28957472	28957981	.	-	.	Parent=Os02t0702600-02
Chr02	irgsp1_rep	CDS	28957396	28957471	.	-	0	Parent=Os02t0702600-02
Chr02	irgsp1_rep	CDS	28955047	28955460	.	-	2	Parent=Os02t0702600-02
Chr02	irgsp1_rep	CDS	28954745	28954899	.	-	2	Parent=Os02t0702600-02
Chr02	irgsp1_rep	CDS	28954603	28954677	.	-	0	Parent=Os02t0702600-02
Chr02	irgsp1_rep	CDS	28954152	28954427	.	-	0	Parent=Os02t0702600-02
Chr02	irgsp1_rep	CDS	28953685	28954032	.	-	0	Parent=Os02t0702600-02
Chr02	irgsp1_rep	CDS	28953240	28953527	.	-	0	Parent=Os02t0702600-02
Chr02	irgsp1_rep	three_prime_UTR	28953068	28953239	.	-	.	Parent=Os02t0702600-02
Chr02	irgsp1_rep	mRNA	28953054	28954427	.	-	.	ID=Os02t0702600-03;Name=Os02t0702600-03;Locus_id=Os02g0702600;CGSNL Gene Symbol=ROPGEF4;CGSNL Gene Name=ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 4;Oryzabase Gene Symbol Synonym(s)=Os RopGEF4%2C OsRopGEF4%2C RopGEF4;Oryzabase Gene Name Synonym(s)=GEF for ROP 4%2C guanine nucleotide exchange factor for Rop 4%2C Rop-specific GEF4%2C Rop-specific guanine nucleotide exchange factor 4;Note=Similar to predicted protein.;Transcript_evidence=AK060937 (DDBJ%2C Best hit);ORF_evidence=B9F1Z8 (UniProt);GO=Molecular Function: Rho guanyl-nucleotide exchange factor activity (GO:0005089);InterPro=Plant specific Rop nucleotide exchanger%2C PRONE (IPR005512);NIAS_FLcDNA=006-201-C02;Oryzabase=11446;Expression=AK060937;TENOR=Os02t0702600-03;KEGG=Os02t0702600-03
Chr02	irgsp1_rep	CDS	28954152	28954427	.	-	0	Parent=Os02t0702600-03
Chr02	irgsp1_rep	CDS	28953685	28954032	.	-	0	Parent=Os02t0702600-03
Chr02	irgsp1_rep	CDS	28953240	28953527	.	-	0	Parent=Os02t0702600-03
Chr02	irgsp1_rep	three_prime_UTR	28953054	28953239	.	-	.	Parent=Os02t0702600-03
Chr02	irgsp1_rep	mRNA	28955179	28957479	.	+	.	ID=Os02t0702633-00;Name=Os02t0702633-00;Locus_id=Os02g0702633;Note=Non-protein coding transcript.;Transcript_evidence=BT086971 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0702633-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	exon	28955179	28955446	.	+	.	Parent=Os02t0702633-00
Chr02	irgsp1_rep	exon	28957383	28957479	.	+	.	Parent=Os02t0702633-00
Chr02	irgsp1_rep	mRNA	28964928	28965942	.	+	.	ID=Os02t0702700-01;Name=Os02t0702700-01;Locus_id=Os02g0702700;Note=Conserved hypothetical protein.;Transcript_evidence=AK243090 (DDBJ%2C Best hit);ORF_evidence=NP_001173130.1 (RefSeq);NIAS_FLcDNA=J100022L23;TENOR=Os02t0702700-01;KEGG=Os02t0702700-01
Chr02	irgsp1_rep	five_prime_UTR	28964928	28964928	.	+	.	Parent=Os02t0702700-01
Chr02	irgsp1_rep	CDS	28964929	28965324	.	+	0	Parent=Os02t0702700-01
Chr02	irgsp1_rep	three_prime_UTR	28965325	28965942	.	+	.	Parent=Os02t0702700-01
Chr02	irgsp1_rep	mRNA	28967587	28971989	.	-	.	ID=Os02t0702800-01;Name=Os02t0702800-01;Locus_id=Os02g0702800;Note=Similar to Syntaxin 22 (AtSYP22) (AtVAM3).;Transcript_evidence=AK071767 (DDBJ%2C Best hit);ORF_evidence=Q3HRZ4 (UniProt);GO=Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: membrane (GO:0016020),Molecular Function: protein binding (GO:0005515);InterPro=Target SNARE coiled-coil domain (IPR000727),t-SNARE (IPR010989);NIAS_FLcDNA=J023113L24;Expression=AK071767;TENOR=Os02t0702800-01;KEGG=Os02t0702800-01
Chr02	irgsp1_rep	five_prime_UTR	28971768	28971989	.	-	.	Parent=Os02t0702800-01
Chr02	irgsp1_rep	CDS	28971598	28971767	.	-	0	Parent=Os02t0702800-01
Chr02	irgsp1_rep	CDS	28971292	28971385	.	-	1	Parent=Os02t0702800-01
Chr02	irgsp1_rep	CDS	28970995	28971131	.	-	0	Parent=Os02t0702800-01
Chr02	irgsp1_rep	CDS	28969090	28969167	.	-	1	Parent=Os02t0702800-01
Chr02	irgsp1_rep	CDS	28968291	28968448	.	-	1	Parent=Os02t0702800-01
Chr02	irgsp1_rep	CDS	28968113	28968213	.	-	2	Parent=Os02t0702800-01
Chr02	irgsp1_rep	CDS	28967966	28968031	.	-	0	Parent=Os02t0702800-01
Chr02	irgsp1_rep	three_prime_UTR	28967587	28967965	.	-	.	Parent=Os02t0702800-01
Chr02	irgsp1_rep	mRNA	28978652	28980213	.	+	.	ID=Os02t0703300-01;Name=Os02t0703300-01;Locus_id=Os02g0703300;Note=Protein of unknown function DUF1218 family protein.;Transcript_evidence=AK105992 (DDBJ%2C Best hit);ORF_evidence=A2X8P2 (UniProt);InterPro=Protein of unknown function DUF1218 (IPR009606);NIAS_FLcDNA=001-205-H02;Expression=AK105992;TENOR=Os02t0703300-01;KEGG=Os02t0703300-01
Chr02	irgsp1_rep	five_prime_UTR	28978652	28979057	.	+	.	Parent=Os02t0703300-01
Chr02	irgsp1_rep	CDS	28979058	28979171	.	+	0	Parent=Os02t0703300-01
Chr02	irgsp1_rep	CDS	28979276	28979484	.	+	0	Parent=Os02t0703300-01
Chr02	irgsp1_rep	CDS	28979594	28979879	.	+	1	Parent=Os02t0703300-01
Chr02	irgsp1_rep	three_prime_UTR	28979880	28980213	.	+	.	Parent=Os02t0703300-01
Chr02	irgsp1_rep	mRNA	28978732	28980231	.	+	.	ID=Os02t0703300-02;Name=Os02t0703300-02;Locus_id=Os02g0703300;Note=Protein of unknown function DUF1218 family protein.;Transcript_evidence=AK060227 (DDBJ%2C Best hit);ORF_evidence=A2X8P2 (UniProt);InterPro=Protein of unknown function DUF1218 (IPR009606);NIAS_FLcDNA=001-002-G11;Expression=AK060227;TENOR=Os02t0703300-02;KEGG=Os02t0703300-02
Chr02	irgsp1_rep	five_prime_UTR	28978732	28979057	.	+	.	Parent=Os02t0703300-02
Chr02	irgsp1_rep	CDS	28979058	28979171	.	+	0	Parent=Os02t0703300-02
Chr02	irgsp1_rep	CDS	28979276	28979484	.	+	0	Parent=Os02t0703300-02
Chr02	irgsp1_rep	CDS	28979594	28979879	.	+	1	Parent=Os02t0703300-02
Chr02	irgsp1_rep	three_prime_UTR	28979880	28980231	.	+	.	Parent=Os02t0703300-02
Chr02	irgsp1_rep	mRNA	28978951	28980228	.	+	.	ID=Os02t0703300-03;Name=Os02t0703300-03;Locus_id=Os02g0703300;Note=Protein of unknown function DUF1218 family protein.;Transcript_evidence=AK071752 (DDBJ%2C Best hit);ORF_evidence=A2X8P2 (UniProt);InterPro=Protein of unknown function DUF1218 (IPR009606);NIAS_FLcDNA=J023113K24;Expression=AK071752;TENOR=Os02t0703300-03;KEGG=Os02t0703300-03
Chr02	irgsp1_rep	five_prime_UTR	28978951	28979057	.	+	.	Parent=Os02t0703300-03
Chr02	irgsp1_rep	CDS	28979058	28979171	.	+	0	Parent=Os02t0703300-03
Chr02	irgsp1_rep	CDS	28979276	28979484	.	+	0	Parent=Os02t0703300-03
Chr02	irgsp1_rep	CDS	28979594	28979879	.	+	1	Parent=Os02t0703300-03
Chr02	irgsp1_rep	three_prime_UTR	28979880	28980228	.	+	.	Parent=Os02t0703300-03
Chr02	irgsp1_rep	mRNA	28995717	28998452	.	+	.	ID=Os02t0703600-01;Name=Os02t0703600-01;Locus_id=Os02g0703600;CGSNL Gene Symbol=ABA8OX1;CGSNL Gene Name=ABA-8'-HYDROXYLASE 1;Oryzabase Gene Symbol Synonym(s)=OsABA8OX1%2C CYP707A5%2C OsCYP707A5%2C ABA8ox1%2C OsABA8ox1;Oryzabase Gene Name Synonym(s)=Abscisic acid 8'-hydroxylase 1%2C ABA 8'-hydroxylase 1 %3B CytoChrome P450 707A5%2C ABA 8'-hydroxylase1;Note=Similar to Abscisic acid 8'-hydroxylase 1.;Transcript_evidence=AK067007 (DDBJ%2C Best hit);ORF_evidence=Q05JG2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);NIAS_FLcDNA=J013091D15;Oryzabase=7251;TENOR=Os02t0703600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	28995717	28995829	.	+	.	Parent=Os02t0703600-01
Chr02	irgsp1_rep	CDS	28995830	28996360	.	+	0	Parent=Os02t0703600-01
Chr02	irgsp1_rep	CDS	28996465	28996848	.	+	0	Parent=Os02t0703600-01
Chr02	irgsp1_rep	CDS	28996929	28997097	.	+	0	Parent=Os02t0703600-01
Chr02	irgsp1_rep	CDS	28997279	28997463	.	+	2	Parent=Os02t0703600-01
Chr02	irgsp1_rep	three_prime_UTR	28997464	28998452	.	+	.	Parent=Os02t0703600-01
Chr02	irgsp1_rep	mRNA	28995752	28997949	.	+	.	ID=Os02t0703600-02;Name=Os02t0703600-02;Locus_id=Os02g0703600;RAP-DB Gene Symbol Synonym(s)=OsABA8ox1%2C CYP707A5;RAP-DB Gene Name Synonym(s)=ABA 8'-hydroxylase 1;CGSNL Gene Symbol=ABA8OX1;CGSNL Gene Name=ABA-8'-HYDROXYLASE 1;Oryzabase Gene Symbol Synonym(s)=OsABA8OX1%2C CYP707A5%2C OsCYP707A5%2C ABA8ox1%2C OsABA8ox1;Oryzabase Gene Name Synonym(s)=Abscisic acid 8'-hydroxylase 1%2C ABA 8'-hydroxylase 1 %3B CytoChrome P450 707A5%2C ABA 8'-hydroxylase1;Note=ABA 8'-hydroxylase%2C Response to submergence;Transcript_evidence=AB277270;ORF_evidence=Q05JG2;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 superfamily (IPR036396),CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);Manual Curation=October 15%2C 2020;Literature_PMID=17205969;Oryzabase=7251;Subcellular location=endoplasmic reticulum (GO:0005783)
Chr02	irgsp1_rep	five_prime_UTR	28995752	28995829	.	+	.	Parent=Os02t0703600-02
Chr02	irgsp1_rep	CDS	28995830	28996360	.	+	0	Parent=Os02t0703600-02
Chr02	irgsp1_rep	CDS	28996465	28996848	.	+	0	Parent=Os02t0703600-02
Chr02	irgsp1_rep	CDS	28996929	28997097	.	+	0	Parent=Os02t0703600-02
Chr02	irgsp1_rep	CDS	28997279	28997385	.	+	2	Parent=Os02t0703600-02
Chr02	irgsp1_rep	CDS	28997541	28997765	.	+	0	Parent=Os02t0703600-02
Chr02	irgsp1_rep	three_prime_UTR	28997766	28997949	.	+	.	Parent=Os02t0703600-02
Chr02	irgsp1_rep	mRNA	28995728	28998274	.	-	.	ID=Os02t0703700-00;Name=Os02t0703700-00;Locus_id=Os02g0703700;Note=Hypothetical protein.;Transcript_evidence=tplb0043h07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0703700-00
Chr02	irgsp1_rep	five_prime_UTR	28997975	28998274	.	-	.	Parent=Os02t0703700-00
Chr02	irgsp1_rep	CDS	28997559	28997974	.	-	0	Parent=Os02t0703700-00
Chr02	irgsp1_rep	CDS	28997277	28997403	.	-	1	Parent=Os02t0703700-00
Chr02	irgsp1_rep	CDS	28996929	28997095	.	-	0	Parent=Os02t0703700-00
Chr02	irgsp1_rep	CDS	28996539	28996848	.	-	1	Parent=Os02t0703700-00
Chr02	irgsp1_rep	three_prime_UTR	28996463	28996538	.	-	.	Parent=Os02t0703700-00
Chr02	irgsp1_rep	three_prime_UTR	28995728	28996358	.	-	.	Parent=Os02t0703700-00
Chr02	irgsp1_rep	mRNA	29019213	29020773	.	-	.	ID=Os02t0703800-01;Name=Os02t0703800-01;Locus_id=Os02g0703800;Note=Conserved hypothetical protein.;Transcript_evidence=AK120025 (DDBJ%2C Best hit);ORF_evidence=A2X8P5 (UniProt);NIAS_FLcDNA=002-186-C08;Oryzabase=17575;TENOR=Os02t0703800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	29020699	29020773	.	-	.	Parent=Os02t0703800-01
Chr02	irgsp1_rep	CDS	29020369	29020698	.	-	0	Parent=Os02t0703800-01
Chr02	irgsp1_rep	three_prime_UTR	29019213	29020368	.	-	.	Parent=Os02t0703800-01
Chr02	irgsp1_rep	mRNA	29021664	29024937	.	+	.	ID=Os02t0703900-01;Name=Os02t0703900-01;Locus_id=Os02g0703900;CGSNL Gene Symbol=UMAMIT6;CGSNL Gene Name=USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 6;Oryzabase Gene Symbol Synonym(s)=OsUMAMIT6;Oryzabase Gene Name Synonym(s)=Usually Multiple Acids Move In and out Transporter 6;Note=Similar to Nodulin-like protein.;Transcript_evidence=AK121966 (DDBJ%2C Best hit);ORF_evidence=XP_002867949.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=J033108E14;Oryzabase=21375;Expression=AK121966;TENOR=Os02t0703900-01;KEGG=Os02t0703900-01
Chr02	irgsp1_rep	five_prime_UTR	29021664	29021756	.	+	.	Parent=Os02t0703900-01
Chr02	irgsp1_rep	CDS	29021757	29022031	.	+	0	Parent=Os02t0703900-01
Chr02	irgsp1_rep	CDS	29022163	29022279	.	+	1	Parent=Os02t0703900-01
Chr02	irgsp1_rep	CDS	29022365	29022650	.	+	1	Parent=Os02t0703900-01
Chr02	irgsp1_rep	CDS	29023370	29023525	.	+	0	Parent=Os02t0703900-01
Chr02	irgsp1_rep	CDS	29023839	29023990	.	+	0	Parent=Os02t0703900-01
Chr02	irgsp1_rep	CDS	29024290	29024494	.	+	1	Parent=Os02t0703900-01
Chr02	irgsp1_rep	three_prime_UTR	29024495	29024937	.	+	.	Parent=Os02t0703900-01
Chr02	irgsp1_rep	mRNA	29021719	29025056	.	+	.	ID=Os02t0703900-02;Name=Os02t0703900-02;Locus_id=Os02g0703900;CGSNL Gene Symbol=UMAMIT6;CGSNL Gene Name=USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 6;Oryzabase Gene Symbol Synonym(s)=OsUMAMIT6;Oryzabase Gene Name Synonym(s)=Usually Multiple Acids Move In and out Transporter 6;Note=Similar to Nodulin-like protein.;Transcript_evidence=AK102115 (DDBJ%2C Best hit);ORF_evidence=XP_002867949.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=J033084H22;Oryzabase=21375;Expression=AK102115;TENOR=Os02t0703900-02;KEGG=Os02t0703900-02
Chr02	irgsp1_rep	five_prime_UTR	29021719	29021756	.	+	.	Parent=Os02t0703900-02
Chr02	irgsp1_rep	CDS	29021757	29022031	.	+	0	Parent=Os02t0703900-02
Chr02	irgsp1_rep	CDS	29022163	29022279	.	+	1	Parent=Os02t0703900-02
Chr02	irgsp1_rep	CDS	29022365	29022650	.	+	1	Parent=Os02t0703900-02
Chr02	irgsp1_rep	CDS	29023370	29023525	.	+	0	Parent=Os02t0703900-02
Chr02	irgsp1_rep	CDS	29023839	29023990	.	+	0	Parent=Os02t0703900-02
Chr02	irgsp1_rep	CDS	29024290	29024494	.	+	1	Parent=Os02t0703900-02
Chr02	irgsp1_rep	three_prime_UTR	29024495	29025056	.	+	.	Parent=Os02t0703900-02
Chr02	irgsp1_rep	mRNA	29026099	29028176	.	-	.	ID=Os02t0704000-01;Name=Os02t0704000-01;Locus_id=Os02g0704000;RAP-DB Gene Symbol Synonym(s)=OsCCD4a;RAP-DB Gene Name Synonym(s)=carotenoid-cleavage dioxygenase 4a;CGSNL Gene Symbol=NCED1;CGSNL Gene Name=9-CIS-EPOXYCAROTENOID DIOXYGENASE 1;Oryzabase Gene Symbol Synonym(s)=OsNCED1%2C OsCCD4a%2C CCD4a;Oryzabase Gene Name Synonym(s)=9-cis-epoxycarotenoid dioxygenase 1%2C carotenoid-cleavage dioxygenase 4a%2C "zeaxanthin 7%2C 8(7'%2C8')-cleavage dioxygenase%2C Chromoplastic";Note=Carotenoid-cleavage dioxygenase;Transcript_evidence=AK064824,AK099580;ORF_evidence=Q6YVJ0;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on single donors with incorporation of molecular oxygen%2C incorporation of two atoms of oxygen (GO:0016702);InterPro=Carotenoid oxygenase (IPR004294);NIAS_FLcDNA=J013000F03,J013040C20;Manual Curation=February 28%2C 2020;Literature_PMID=30124964;Oryzabase=11807;TENOR=Os02t0704000-01
Chr02	irgsp1_rep	five_prime_UTR	29028160	29028176	.	-	.	Parent=Os02t0704000-01
Chr02	irgsp1_rep	CDS	29026243	29028159	.	-	0	Parent=Os02t0704000-01
Chr02	irgsp1_rep	three_prime_UTR	29026099	29026242	.	-	.	Parent=Os02t0704000-01
Chr02	irgsp1_rep	mRNA	29026243	29027745	.	+	.	ID=Os02t0704131-00;Name=Os02t0704131-00;Locus_id=Os02g0704131;Note=Hypothetical protein.;Transcript_evidence=BT085311 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0704131-00
Chr02	irgsp1_rep	five_prime_UTR	29026243	29026287	.	+	.	Parent=Os02t0704131-00
Chr02	irgsp1_rep	CDS	29026288	29026602	.	+	0	Parent=Os02t0704131-00
Chr02	irgsp1_rep	CDS	29026744	29027745	.	+	0	Parent=Os02t0704131-00
Chr02	irgsp1_rep	mRNA	29055636	29056248	.	-	.	ID=Os02t0704262-00;Name=Os02t0704262-00;Locus_id=Os02g0704262;Note=Conserved hypothetical protein.;Transcript_evidence=CT835588 (DDBJ%2C Secondary hit);ORF_evidence=B9GCT9 (UniProt);TENOR=Os02t0704262-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	29055928	29056248	.	-	0	Parent=Os02t0704262-00
Chr02	irgsp1_rep	three_prime_UTR	29055636	29055927	.	-	.	Parent=Os02t0704262-00
Chr02	irgsp1_rep	mRNA	29059400	29062130	.	-	.	ID=Os02t0704300-01;Name=Os02t0704300-01;Locus_id=Os02g0704300;Note=Conserved hypothetical protein.;Transcript_evidence=AK058932 (DDBJ%2C Best hit);ORF_evidence=Q6YVI6 (UniProt);NIAS_FLcDNA=001-009-D09;Expression=AK058932;TENOR=Os02t0704300-01;KEGG=Os02t0704300-01
Chr02	irgsp1_rep	CDS	29061711	29062130	.	-	0	Parent=Os02t0704300-01
Chr02	irgsp1_rep	CDS	29060754	29060922	.	-	0	Parent=Os02t0704300-01
Chr02	irgsp1_rep	CDS	29060332	29060489	.	-	2	Parent=Os02t0704300-01
Chr02	irgsp1_rep	CDS	29059892	29060140	.	-	0	Parent=Os02t0704300-01
Chr02	irgsp1_rep	three_prime_UTR	29059400	29059891	.	-	.	Parent=Os02t0704300-01
Chr02	irgsp1_rep	mRNA	29069440	29072094	.	+	.	ID=Os02t0704500-01;Name=Os02t0704500-01;Locus_id=Os02g0704500;CGSNL Gene Symbol=PAP2;CGSNL Gene Name=PHOSPHATIDATE PHOSPHATASE 2;Oryzabase Gene Symbol Synonym(s)=OsPAP2;Oryzabase Gene Name Synonym(s)=phosphatidate phosphatase 2;Note=Phosphatidic acid phosphatase type 2/haloperoxidase domain containing protein.;Transcript_evidence=AK061066 (DDBJ%2C Best hit),AK059507 (DDBJ%2C Best hit);ORF_evidence=Q6YVI3 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824);InterPro=Phosphatidic acid phosphatase type 2/haloperoxidase (IPR000326),Phosphatidic acid phosphatase/chloroperoxidase%2C N-terminal (IPR016118);NIAS_FLcDNA=006-206-B10,001-029-A12;Oryzabase=23622;Expression=AK061066;TENOR=Os02t0704500-01;KEGG=Os02t0704500-01
Chr02	irgsp1_rep	five_prime_UTR	29069440	29069566	.	+	.	Parent=Os02t0704500-01
Chr02	irgsp1_rep	CDS	29069567	29069869	.	+	0	Parent=Os02t0704500-01
Chr02	irgsp1_rep	CDS	29070668	29070893	.	+	0	Parent=Os02t0704500-01
Chr02	irgsp1_rep	CDS	29071410	29071483	.	+	2	Parent=Os02t0704500-01
Chr02	irgsp1_rep	CDS	29071636	29071860	.	+	0	Parent=Os02t0704500-01
Chr02	irgsp1_rep	three_prime_UTR	29071861	29072094	.	+	.	Parent=Os02t0704500-01
Chr02	irgsp1_rep	mRNA	29072649	29076395	.	-	.	ID=Os02t0704600-01;Name=Os02t0704600-01;Locus_id=Os02g0704600;Note=Conserved hypothetical protein.;Transcript_evidence=AK241454 (DDBJ%2C Best hit);ORF_evidence=NP_001047861.1 (RefSeq);NIAS_FLcDNA=J065163N21;TENOR=Os02t0704600-01;KEGG=Os02t0704600-01
Chr02	irgsp1_rep	five_prime_UTR	29076273	29076395	.	-	.	Parent=Os02t0704600-01
Chr02	irgsp1_rep	five_prime_UTR	29075699	29075768	.	-	.	Parent=Os02t0704600-01
Chr02	irgsp1_rep	CDS	29074918	29075698	.	-	0	Parent=Os02t0704600-01
Chr02	irgsp1_rep	CDS	29073452	29073880	.	-	2	Parent=Os02t0704600-01
Chr02	irgsp1_rep	CDS	29072906	29073066	.	-	2	Parent=Os02t0704600-01
Chr02	irgsp1_rep	three_prime_UTR	29072649	29072905	.	-	.	Parent=Os02t0704600-01
Chr02	irgsp1_rep	mRNA	29078261	29081208	.	+	.	ID=Os02t0704800-01;Name=Os02t0704800-01;Locus_id=Os02g0704800;Note=Similar to ornithine carbamoyltransferase.;Transcript_evidence=AK243192 (DDBJ%2C Best hit);ORF_evidence=NP_001151252.1 (RefSeq);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: ornithine metabolic process (GO:0006591),Cellular Component: ornithine carbamoyltransferase complex (GO:0009348),Molecular Function: ornithine carbamoyltransferase activity (GO:0004585),Molecular Function: amino acid binding (GO:0016597),Molecular Function: carboxyl- or carbamoyltransferase activity (GO:0016743);InterPro=Ornithine carbamoyltransferase (IPR002292),Aspartate/ornithine carbamoyltransferase (IPR006130),Aspartate/ornithine carbamoyltransferase%2C Asp/Orn-binding domain (IPR006131),Aspartate/ornithine carbamoyltransferase%2C carbamoyl-P binding (IPR006132);NIAS_FLcDNA=J100039M06;TENOR=Os02t0704800-01;KEGG=Os02t0704800-01 (EC:2.1.3.3)
Chr02	irgsp1_rep	five_prime_UTR	29078261	29078359	.	+	.	Parent=Os02t0704800-01
Chr02	irgsp1_rep	CDS	29078360	29078540	.	+	0	Parent=Os02t0704800-01
Chr02	irgsp1_rep	CDS	29079319	29079653	.	+	2	Parent=Os02t0704800-01
Chr02	irgsp1_rep	CDS	29080158	29080289	.	+	0	Parent=Os02t0704800-01
Chr02	irgsp1_rep	CDS	29080377	29080649	.	+	0	Parent=Os02t0704800-01
Chr02	irgsp1_rep	CDS	29080802	29080984	.	+	0	Parent=Os02t0704800-01
Chr02	irgsp1_rep	three_prime_UTR	29080985	29081208	.	+	.	Parent=Os02t0704800-01
Chr02	irgsp1_rep	mRNA	29081884	29086702	.	-	.	ID=Os02t0704900-01;Name=Os02t0704900-01;Locus_id=Os02g0704900;Oryzabase Gene Name Synonym(s)=sPPase%2C Soluble Inorganic Pyrophosphatase;Note=Similar to Inorganic pyrophosphatase-like protein.;Transcript_evidence=AK061019 (DDBJ%2C Best hit);ORF_evidence=Q0DYB1 (UniProt);GO=Biological Process: phosphate-containing compound metabolic process (GO:0006796),Cellular Component: cytoplasm (GO:0005737),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: inorganic diphosphatase activity (GO:0004427);InterPro=Inorganic pyrophosphatase (IPR008162);NIAS_FLcDNA=006-204-C08;Oryzabase=22994;Expression=AK061019;TENOR=Os02t0704900-01;KEGG=Os02t0704900-01 (EC:3.6.1.1)
Chr02	irgsp1_rep	five_prime_UTR	29086571	29086702	.	-	.	Parent=Os02t0704900-01
Chr02	irgsp1_rep	five_prime_UTR	29084410	29084411	.	-	.	Parent=Os02t0704900-01
Chr02	irgsp1_rep	CDS	29084280	29084409	.	-	0	Parent=Os02t0704900-01
Chr02	irgsp1_rep	CDS	29084112	29084140	.	-	2	Parent=Os02t0704900-01
Chr02	irgsp1_rep	CDS	29083590	29083655	.	-	0	Parent=Os02t0704900-01
Chr02	irgsp1_rep	CDS	29083135	29083242	.	-	0	Parent=Os02t0704900-01
Chr02	irgsp1_rep	CDS	29082988	29083053	.	-	0	Parent=Os02t0704900-01
Chr02	irgsp1_rep	CDS	29082517	29082637	.	-	0	Parent=Os02t0704900-01
Chr02	irgsp1_rep	CDS	29082328	29082409	.	-	2	Parent=Os02t0704900-01
Chr02	irgsp1_rep	CDS	29082181	29082223	.	-	1	Parent=Os02t0704900-01
Chr02	irgsp1_rep	three_prime_UTR	29081884	29082180	.	-	.	Parent=Os02t0704900-01
Chr02	irgsp1_rep	mRNA	29081845	29086675	.	-	.	ID=Os02t0704900-02;Name=Os02t0704900-02;Locus_id=Os02g0704900;Oryzabase Gene Name Synonym(s)=sPPase%2C Soluble Inorganic Pyrophosphatase;Note=Similar to Inorganic pyrophosphatase-like protein.;Transcript_evidence=AK070562 (DDBJ%2C Best hit),AK103984 (DDBJ%2C Best hit);ORF_evidence=Q0DYB1 (UniProt);GO=Biological Process: phosphate-containing compound metabolic process (GO:0006796),Cellular Component: cytoplasm (GO:0005737),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: inorganic diphosphatase activity (GO:0004427);InterPro=Inorganic pyrophosphatase (IPR008162);NIAS_FLcDNA=J023061F08,001-017-G06;Oryzabase=22994;Expression=AK070562;TENOR=Os02t0704900-02;KEGG=Os02t0704900-02 (EC:3.6.1.1)
Chr02	irgsp1_rep	five_prime_UTR	29086571	29086675	.	-	.	Parent=Os02t0704900-02
Chr02	irgsp1_rep	five_prime_UTR	29084410	29084411	.	-	.	Parent=Os02t0704900-02
Chr02	irgsp1_rep	CDS	29084280	29084409	.	-	0	Parent=Os02t0704900-02
Chr02	irgsp1_rep	CDS	29084112	29084140	.	-	2	Parent=Os02t0704900-02
Chr02	irgsp1_rep	CDS	29083590	29083655	.	-	0	Parent=Os02t0704900-02
Chr02	irgsp1_rep	CDS	29083135	29083242	.	-	0	Parent=Os02t0704900-02
Chr02	irgsp1_rep	CDS	29082988	29083053	.	-	0	Parent=Os02t0704900-02
Chr02	irgsp1_rep	CDS	29082517	29082637	.	-	0	Parent=Os02t0704900-02
Chr02	irgsp1_rep	CDS	29082328	29082409	.	-	2	Parent=Os02t0704900-02
Chr02	irgsp1_rep	CDS	29082181	29082223	.	-	1	Parent=Os02t0704900-02
Chr02	irgsp1_rep	three_prime_UTR	29081845	29082180	.	-	.	Parent=Os02t0704900-02
Chr02	irgsp1_rep	mRNA	29082292	29084352	.	+	.	ID=Os02t0704933-00;Name=Os02t0704933-00;Locus_id=Os02g0704933;Note=Hypothetical gene.;Transcript_evidence=BT019269 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0704933-00;KEGG=Os02t0704933-00
Chr02	irgsp1_rep	five_prime_UTR	29082292	29082411	.	+	.	Parent=Os02t0704933-00
Chr02	irgsp1_rep	five_prime_UTR	29082519	29082569	.	+	.	Parent=Os02t0704933-00
Chr02	irgsp1_rep	CDS	29082570	29082658	.	+	0	Parent=Os02t0704933-00
Chr02	irgsp1_rep	CDS	29083086	29083224	.	+	1	Parent=Os02t0704933-00
Chr02	irgsp1_rep	three_prime_UTR	29083225	29083296	.	+	.	Parent=Os02t0704933-00
Chr02	irgsp1_rep	three_prime_UTR	29084244	29084352	.	+	.	Parent=Os02t0704933-00
Chr02	irgsp1_rep	mRNA	29088540	29093146	.	-	.	ID=Os02t0704966-00;Name=Os02t0704966-00;Locus_id=Os02g0704966;Note=Hypothetical conserved gene.;Transcript_evidence=CT835339 (DDBJ%2C Best hit);ORF_evidence=B8AH94 (UniProt);GO=Biological Process: DNA replication (GO:0006260),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP binding (GO:0005524);InterPro=ATPase%2C AAA-type%2C core (IPR003959),DNA polymerase III%2C clamp loader complex%2C gamma/delta/delta subunit%2C C-terminal (IPR008921),DNA polymerase III%2C clamp-loader complex%2C subunit E%2C C-terminal (IPR019483);TENOR=Os02t0704966-00;KEGG=Os02t0704966-00
Chr02	irgsp1_rep	five_prime_UTR	29092777	29093146	.	-	.	Parent=Os02t0704966-00
Chr02	irgsp1_rep	CDS	29091577	29092776	.	-	0	Parent=Os02t0704966-00
Chr02	irgsp1_rep	CDS	29091238	29091348	.	-	0	Parent=Os02t0704966-00
Chr02	irgsp1_rep	CDS	29091121	29091153	.	-	0	Parent=Os02t0704966-00
Chr02	irgsp1_rep	CDS	29090508	29090676	.	-	0	Parent=Os02t0704966-00
Chr02	irgsp1_rep	CDS	29090240	29090421	.	-	2	Parent=Os02t0704966-00
Chr02	irgsp1_rep	CDS	29090023	29090159	.	-	0	Parent=Os02t0704966-00
Chr02	irgsp1_rep	CDS	29089820	29089915	.	-	1	Parent=Os02t0704966-00
Chr02	irgsp1_rep	CDS	29089560	29089629	.	-	1	Parent=Os02t0704966-00
Chr02	irgsp1_rep	CDS	29089367	29089441	.	-	0	Parent=Os02t0704966-00
Chr02	irgsp1_rep	CDS	29089239	29089284	.	-	0	Parent=Os02t0704966-00
Chr02	irgsp1_rep	CDS	29088817	29088884	.	-	2	Parent=Os02t0704966-00
Chr02	irgsp1_rep	three_prime_UTR	29088540	29088816	.	-	.	Parent=Os02t0704966-00
Chr02	irgsp1_rep	mRNA	29095057	29097451	.	-	.	ID=Os02t0705000-01;Name=Os02t0705000-01;Locus_id=Os02g0705000;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK106021 (DDBJ%2C Best hit),AK068080 (DDBJ%2C Best hit),AK104529 (DDBJ%2C Best hit);ORF_evidence=B6TJG6 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NmrA-like (IPR008030),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-206-C03,J013132K15,006-304-A04;TENOR=Os02t0705000-01
Chr02	irgsp1_rep	five_prime_UTR	29097404	29097451	.	-	.	Parent=Os02t0705000-01
Chr02	irgsp1_rep	CDS	29097221	29097403	.	-	0	Parent=Os02t0705000-01
Chr02	irgsp1_rep	CDS	29096962	29097096	.	-	0	Parent=Os02t0705000-01
Chr02	irgsp1_rep	CDS	29096245	29096482	.	-	0	Parent=Os02t0705000-01
Chr02	irgsp1_rep	CDS	29095924	29096127	.	-	2	Parent=Os02t0705000-01
Chr02	irgsp1_rep	CDS	29095232	29095392	.	-	2	Parent=Os02t0705000-01
Chr02	irgsp1_rep	three_prime_UTR	29095057	29095231	.	-	.	Parent=Os02t0705000-01
Chr02	irgsp1_rep	mRNA	29099105	29101290	.	-	.	ID=Os02t0705100-01;Name=Os02t0705100-01;Locus_id=Os02g0705100;CGSNL Gene Symbol=NHL1;CGSNL Gene Name=NYC3-LIKE 1;Note=Alpha/beta hydrolase fold-1 domain containing protein.;Transcript_evidence=AK063491 (DDBJ%2C Best hit);ORF_evidence=NP_195371.1 (RefSeq);InterPro=Alpha/beta hydrolase fold-1 (IPR000073);NIAS_FLcDNA=001-116-C10;Oryzabase=8684;Expression=AK063491;TENOR=Os02t0705100-01;KEGG=Os02t0705100-01
Chr02	irgsp1_rep	five_prime_UTR	29101213	29101290	.	-	.	Parent=Os02t0705100-01
Chr02	irgsp1_rep	CDS	29100933	29101212	.	-	0	Parent=Os02t0705100-01
Chr02	irgsp1_rep	CDS	29100665	29100803	.	-	2	Parent=Os02t0705100-01
Chr02	irgsp1_rep	CDS	29099814	29100240	.	-	1	Parent=Os02t0705100-01
Chr02	irgsp1_rep	CDS	29099333	29099719	.	-	0	Parent=Os02t0705100-01
Chr02	irgsp1_rep	three_prime_UTR	29099105	29099332	.	-	.	Parent=Os02t0705100-01
Chr02	irgsp1_rep	mRNA	29108515	29112062	.	+	.	ID=Os02t0705300-01;Name=Os02t0705300-01;Locus_id=Os02g0705300;Oryzabase Gene Symbol Synonym(s)=OsTLP8%2C OsTLP8a%2C OsTLP8b%2C OsTLP8c%2C OsTLP8d%2C OsTLP5%2C OsFbox107%2C Os_F0446;Oryzabase Gene Name Synonym(s)=tubby-like protein 8%2C tubby-like protein 5%2C F-box protein 107;Note=Tubby-like protein 2.;Transcript_evidence=AK064855 (DDBJ%2C Best hit);ORF_evidence=Q6Z2G9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Tubby%2C C-terminal (IPR000007),F-box domain%2C cyclin-like (IPR001810),Tubby%2C C-terminal%2C conserved site (IPR018066),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013000H10;Oryzabase=14710;Expression=AK064855;TENOR=Os02t0705300-01;KEGG=Os02t0705300-01
Chr02	irgsp1_rep	five_prime_UTR	29108515	29109192	.	+	.	Parent=Os02t0705300-01
Chr02	irgsp1_rep	CDS	29109193	29109585	.	+	0	Parent=Os02t0705300-01
Chr02	irgsp1_rep	CDS	29109662	29109749	.	+	0	Parent=Os02t0705300-01
Chr02	irgsp1_rep	CDS	29110794	29110926	.	+	2	Parent=Os02t0705300-01
Chr02	irgsp1_rep	CDS	29111013	29111685	.	+	1	Parent=Os02t0705300-01
Chr02	irgsp1_rep	three_prime_UTR	29111686	29112062	.	+	.	Parent=Os02t0705300-01
Chr02	irgsp1_rep	mRNA	29108596	29111987	.	+	.	ID=Os02t0705300-02;Name=Os02t0705300-02;Locus_id=Os02g0705300;Oryzabase Gene Symbol Synonym(s)=OsTLP8%2C OsTLP8a%2C OsTLP8b%2C OsTLP8c%2C OsTLP8d%2C OsTLP5%2C OsFbox107%2C Os_F0446;Oryzabase Gene Name Synonym(s)=tubby-like protein 8%2C tubby-like protein 5%2C F-box protein 107;Note=Similar to cDNA clone:J013000H10%2C full insert sequence.;Transcript_evidence=AK101936 (DDBJ%2C Best hit);ORF_evidence=Q6Z2G9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Tubby%2C C-terminal (IPR000007),F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033074D16;Oryzabase=14710;Expression=AK101936;TENOR=Os02t0705300-02;KEGG=Os02t0705300-02
Chr02	irgsp1_rep	five_prime_UTR	29108596	29109192	.	+	.	Parent=Os02t0705300-02
Chr02	irgsp1_rep	CDS	29109193	29109585	.	+	0	Parent=Os02t0705300-02
Chr02	irgsp1_rep	CDS	29109662	29109829	.	+	0	Parent=Os02t0705300-02
Chr02	irgsp1_rep	three_prime_UTR	29109830	29111987	.	+	.	Parent=Os02t0705300-02
Chr02	irgsp1_rep	mRNA	29109017	29112036	.	+	.	ID=Os02t0705300-03;Name=Os02t0705300-03;Locus_id=Os02g0705300;Oryzabase Gene Symbol Synonym(s)=OsTLP8%2C OsTLP8a%2C OsTLP8b%2C OsTLP8c%2C OsTLP8d%2C OsTLP5%2C OsFbox107%2C Os_F0446;Oryzabase Gene Name Synonym(s)=tubby-like protein 8%2C tubby-like protein 5%2C F-box protein 107;Note=Tubby family protein.;Transcript_evidence=AK106164 (DDBJ%2C Best hit);ORF_evidence=Q6Z2G9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Tubby%2C C-terminal (IPR000007),F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=001-208-B05;Oryzabase=14710;Expression=AK106164;TENOR=Os02t0705300-03;KEGG=Os02t0705300-03
Chr02	irgsp1_rep	five_prime_UTR	29109017	29109192	.	+	.	Parent=Os02t0705300-03
Chr02	irgsp1_rep	CDS	29109193	29109585	.	+	0	Parent=Os02t0705300-03
Chr02	irgsp1_rep	CDS	29109662	29109749	.	+	0	Parent=Os02t0705300-03
Chr02	irgsp1_rep	CDS	29110794	29110926	.	+	2	Parent=Os02t0705300-03
Chr02	irgsp1_rep	CDS	29111013	29111347	.	+	1	Parent=Os02t0705300-03
Chr02	irgsp1_rep	CDS	29111905	29111936	.	+	2	Parent=Os02t0705300-03
Chr02	irgsp1_rep	three_prime_UTR	29111937	29112036	.	+	.	Parent=Os02t0705300-03
Chr02	irgsp1_rep	mRNA	29109211	29111987	.	+	.	ID=Os02t0705300-04;Name=Os02t0705300-04;Locus_id=Os02g0705300;Oryzabase Gene Symbol Synonym(s)=OsTLP8%2C OsTLP8a%2C OsTLP8b%2C OsTLP8c%2C OsTLP8d%2C OsTLP5%2C OsFbox107%2C Os_F0446;Oryzabase Gene Name Synonym(s)=tubby-like protein 8%2C tubby-like protein 5%2C F-box protein 107;Note=Similar to cDNA clone:J013000H10%2C full insert sequence.;Transcript_evidence=AK062089 (DDBJ%2C Best hit);ORF_evidence=Q6Z2G9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Tubby%2C C-terminal (IPR000007),F-box domain%2C cyclin-like (IPR001810),Tubby%2C C-terminal%2C conserved site (IPR018066),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=001-044-G09;Oryzabase=14710;Expression=AK062089;TENOR=Os02t0705300-04;KEGG=Os02t0705300-04
Chr02	irgsp1_rep	CDS	29109211	29109585	.	+	0	Parent=Os02t0705300-04
Chr02	irgsp1_rep	CDS	29109662	29109749	.	+	0	Parent=Os02t0705300-04
Chr02	irgsp1_rep	CDS	29110794	29110926	.	+	2	Parent=Os02t0705300-04
Chr02	irgsp1_rep	CDS	29111013	29111685	.	+	1	Parent=Os02t0705300-04
Chr02	irgsp1_rep	three_prime_UTR	29111686	29111987	.	+	.	Parent=Os02t0705300-04
Chr02	irgsp1_rep	mRNA	29113442	29114646	.	+	.	ID=Os02t0705400-01;Name=Os02t0705400-01;Locus_id=Os02g0705400;Note=Similar to Pathogen induced protein 2-4.;Transcript_evidence=AK072661 (DDBJ%2C Best hit);ORF_evidence=B6TCZ7 (UniProt);GO=Biological Process: response to stress (GO:0006950);InterPro=UspA (IPR006016),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J023134M13;Expression=AK072661;TENOR=Os02t0705400-01;KEGG=Os02t0705400-01
Chr02	irgsp1_rep	five_prime_UTR	29113442	29113547	.	+	.	Parent=Os02t0705400-01
Chr02	irgsp1_rep	CDS	29113548	29113805	.	+	0	Parent=Os02t0705400-01
Chr02	irgsp1_rep	three_prime_UTR	29113806	29114646	.	+	.	Parent=Os02t0705400-01
Chr02	irgsp1_rep	mRNA	29113445	29117170	.	+	.	ID=Os02t0705400-02;Name=Os02t0705400-02;Locus_id=Os02g0705400;Note=Similar to Pathogen induced protein 2-4.;Transcript_evidence=AK070986 (DDBJ%2C Best hit);ORF_evidence=B4FVQ8 (UniProt);GO=Biological Process: response to stress (GO:0006950);InterPro=UspA (IPR006016),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J023078F08;Expression=AK070986;TENOR=Os02t0705400-02;KEGG=Os02t0705400-02
Chr02	irgsp1_rep	five_prime_UTR	29113445	29113547	.	+	.	Parent=Os02t0705400-02
Chr02	irgsp1_rep	CDS	29113548	29113800	.	+	0	Parent=Os02t0705400-02
Chr02	irgsp1_rep	CDS	29114816	29114895	.	+	2	Parent=Os02t0705400-02
Chr02	irgsp1_rep	CDS	29115129	29115247	.	+	0	Parent=Os02t0705400-02
Chr02	irgsp1_rep	CDS	29116296	29116372	.	+	1	Parent=Os02t0705400-02
Chr02	irgsp1_rep	CDS	29116871	29116896	.	+	2	Parent=Os02t0705400-02
Chr02	irgsp1_rep	three_prime_UTR	29116897	29117170	.	+	.	Parent=Os02t0705400-02
Chr02	irgsp1_rep	mRNA	29117082	29119291	.	-	.	ID=Os02t0705500-01;Name=Os02t0705500-01;Locus_id=Os02g0705500;RAP-DB Gene Symbol Synonym(s)=OsBLR1;RAP-DB Gene Name Synonym(s)=BRASSINOSTEROID-RESPONSIVE LEAF ANGLE REGULATOR 1;CGSNL Gene Symbol=BLR1;CGSNL Gene Name=BRASSINOSTEROID-RESPONSIVE LEAF ANGLE REGULATOR 1;Oryzabase Gene Symbol Synonym(s)=OsbHLH079%2C OsbHLH79%2C bHLH079%2C bHLH79%2C OsBLR1;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 079;Note=bHLH transcription factor%2C Regulation of brassinosteroid signalling%2C Regulation of leaf angle and grain length;Transcript_evidence=AK119183;ORF_evidence=Q6Z2G7;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Helix-loop-helix DNA-binding domain superfamily (IPR036638),Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);NIAS_FLcDNA=001-038-D03;Manual Curation=February 7%2C 2020;Literature_PMID=32026326;Oryzabase=15366;TENOR=Os02t0705500-01;Subcellular location=nucleus (GO:0005634)
Chr02	irgsp1_rep	five_prime_UTR	29119089	29119291	.	-	.	Parent=Os02t0705500-01
Chr02	irgsp1_rep	CDS	29118816	29119088	.	-	0	Parent=Os02t0705500-01
Chr02	irgsp1_rep	CDS	29118463	29118729	.	-	0	Parent=Os02t0705500-01
Chr02	irgsp1_rep	CDS	29118234	29118368	.	-	0	Parent=Os02t0705500-01
Chr02	irgsp1_rep	CDS	29117837	29118130	.	-	0	Parent=Os02t0705500-01
Chr02	irgsp1_rep	CDS	29117662	29117740	.	-	0	Parent=Os02t0705500-01
Chr02	irgsp1_rep	CDS	29117212	29117249	.	-	2	Parent=Os02t0705500-01
Chr02	irgsp1_rep	three_prime_UTR	29117082	29117211	.	-	.	Parent=Os02t0705500-01
Chr02	irgsp1_rep	mRNA	29117082	29119217	.	-	.	ID=Os02t0705500-02;Name=Os02t0705500-02;Locus_id=Os02g0705500;CGSNL Gene Symbol=BLR1;CGSNL Gene Name=BRASSINOSTEROID-RESPONSIVE LEAF ANGLE REGULATOR 1;Oryzabase Gene Symbol Synonym(s)=OsbHLH079%2C OsbHLH79%2C bHLH079%2C bHLH79%2C OsBLR1;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 079%2C Basic Helix-Loop-Helix 79;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=AK073952 (DDBJ%2C Best hit);ORF_evidence=B8AH97 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J033078L20;Oryzabase=15366;TENOR=Os02t0705500-02
Chr02	irgsp1_rep	five_prime_UTR	29119089	29119217	.	-	.	Parent=Os02t0705500-02
Chr02	irgsp1_rep	CDS	29118816	29119088	.	-	0	Parent=Os02t0705500-02
Chr02	irgsp1_rep	CDS	29118463	29118729	.	-	0	Parent=Os02t0705500-02
Chr02	irgsp1_rep	CDS	29118234	29118368	.	-	0	Parent=Os02t0705500-02
Chr02	irgsp1_rep	CDS	29117837	29118130	.	-	0	Parent=Os02t0705500-02
Chr02	irgsp1_rep	CDS	29117662	29117740	.	-	0	Parent=Os02t0705500-02
Chr02	irgsp1_rep	CDS	29117212	29117249	.	-	2	Parent=Os02t0705500-02
Chr02	irgsp1_rep	three_prime_UTR	29117082	29117211	.	-	.	Parent=Os02t0705500-02
Chr02	irgsp1_rep	mRNA	29118773	29120637	.	+	.	ID=Os02t0705550-01;Name=Os02t0705550-01;Locus_id=Os02g0705550;Note=Non-protein coding transcript.;Transcript_evidence=AK107038 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-121-B11;TENOR=Os02t0705550-01
Chr02	irgsp1_rep	exon	29118773	29120637	.	+	.	Parent=Os02t0705550-01
Chr02	irgsp1_rep	mRNA	29135548	29141632	.	-	.	ID=Os02t0705600-01;Name=Os02t0705600-01;Locus_id=Os02g0705600;Oryzabase Gene Symbol Synonym(s)=OsPUB29;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 29%2C U-box protein 29;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK101760 (DDBJ%2C Best hit);ORF_evidence=B6SV52 (UniProt);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488);InterPro=U box domain (IPR003613),Armadillo-like helical (IPR011989),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033063P17;Oryzabase=17821;Expression=AK101760;TENOR=Os02t0705600-01;KEGG=Os02t0705600-01
Chr02	irgsp1_rep	five_prime_UTR	29141120	29141632	.	-	.	Parent=Os02t0705600-01
Chr02	irgsp1_rep	five_prime_UTR	29139325	29139366	.	-	.	Parent=Os02t0705600-01
Chr02	irgsp1_rep	CDS	29139268	29139324	.	-	0	Parent=Os02t0705600-01
Chr02	irgsp1_rep	CDS	29138636	29138821	.	-	0	Parent=Os02t0705600-01
Chr02	irgsp1_rep	CDS	29138411	29138518	.	-	0	Parent=Os02t0705600-01
Chr02	irgsp1_rep	CDS	29136764	29137962	.	-	0	Parent=Os02t0705600-01
Chr02	irgsp1_rep	CDS	29135881	29136643	.	-	1	Parent=Os02t0705600-01
Chr02	irgsp1_rep	three_prime_UTR	29135548	29135880	.	-	.	Parent=Os02t0705600-01
Chr02	irgsp1_rep	mRNA	29135570	29141500	.	-	.	ID=Os02t0705600-02;Name=Os02t0705600-02;Locus_id=Os02g0705600;Oryzabase Gene Symbol Synonym(s)=OsPUB29;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 29%2C U-box protein 29;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK065645 (DDBJ%2C Best hit);ORF_evidence=B6SV52 (UniProt);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488);InterPro=U box domain (IPR003613),Armadillo-like helical (IPR011989),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013035E07;Oryzabase=17821;Expression=AK065645;TENOR=Os02t0705600-02;KEGG=Os02t0705600-02
Chr02	irgsp1_rep	five_prime_UTR	29141120	29141500	.	-	.	Parent=Os02t0705600-02
Chr02	irgsp1_rep	five_prime_UTR	29139325	29139366	.	-	.	Parent=Os02t0705600-02
Chr02	irgsp1_rep	CDS	29139268	29139324	.	-	0	Parent=Os02t0705600-02
Chr02	irgsp1_rep	CDS	29138636	29138821	.	-	0	Parent=Os02t0705600-02
Chr02	irgsp1_rep	CDS	29138411	29138518	.	-	0	Parent=Os02t0705600-02
Chr02	irgsp1_rep	CDS	29136764	29137962	.	-	0	Parent=Os02t0705600-02
Chr02	irgsp1_rep	CDS	29135881	29136643	.	-	1	Parent=Os02t0705600-02
Chr02	irgsp1_rep	three_prime_UTR	29135570	29135880	.	-	.	Parent=Os02t0705600-02
Chr02	irgsp1_rep	mRNA	29135051	29141431	.	-	.	ID=Os02t0705600-03;Name=Os02t0705600-03;Locus_id=Os02g0705600;Oryzabase Gene Symbol Synonym(s)=OsPUB29;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 29%2C U-box protein 29;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK100727 (DDBJ%2C Best hit);ORF_evidence=B6SV52 (UniProt);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488);InterPro=U box domain (IPR003613),Armadillo-like helical (IPR011989),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023117E08;Oryzabase=17821;Expression=AK100727;TENOR=Os02t0705600-03;KEGG=Os02t0705600-03
Chr02	irgsp1_rep	five_prime_UTR	29141120	29141431	.	-	.	Parent=Os02t0705600-03
Chr02	irgsp1_rep	five_prime_UTR	29139325	29139366	.	-	.	Parent=Os02t0705600-03
Chr02	irgsp1_rep	CDS	29139268	29139324	.	-	0	Parent=Os02t0705600-03
Chr02	irgsp1_rep	CDS	29138636	29138821	.	-	0	Parent=Os02t0705600-03
Chr02	irgsp1_rep	CDS	29138411	29138518	.	-	0	Parent=Os02t0705600-03
Chr02	irgsp1_rep	CDS	29136764	29137962	.	-	0	Parent=Os02t0705600-03
Chr02	irgsp1_rep	CDS	29135881	29136643	.	-	1	Parent=Os02t0705600-03
Chr02	irgsp1_rep	three_prime_UTR	29135875	29135880	.	-	.	Parent=Os02t0705600-03
Chr02	irgsp1_rep	three_prime_UTR	29135051	29135299	.	-	.	Parent=Os02t0705600-03
Chr02	irgsp1_rep	mRNA	29190864	29195545	.	+	.	ID=Os02t0706400-01;Name=Os02t0706400-01;Locus_id=Os02g0706400;Note=Similar to RADIALIS.;Transcript_evidence=AK121386 (DDBJ%2C Best hit);ORF_evidence=NP_001151347.1 (RefSeq);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),SANT%2C eukarya (IPR017884);NIAS_FLcDNA=J023127K17;Expression=AK121386;TENOR=Os02t0706400-01;KEGG=Os02t0706400-01
Chr02	irgsp1_rep	five_prime_UTR	29190864	29193629	.	+	.	Parent=Os02t0706400-01
Chr02	irgsp1_rep	CDS	29193630	29193910	.	+	0	Parent=Os02t0706400-01
Chr02	irgsp1_rep	CDS	29195255	29195279	.	+	1	Parent=Os02t0706400-01
Chr02	irgsp1_rep	three_prime_UTR	29195280	29195545	.	+	.	Parent=Os02t0706400-01
Chr02	irgsp1_rep	mRNA	29199147	29204307	.	+	.	ID=Os02t0706500-01;Name=Os02t0706500-01;Locus_id=Os02g0706500;CGSNL Gene Name=AAA-ATPASE 5;Oryzabase Gene Name Synonym(s)=OsAAA-ATPase5%2C AAA-ATPase5;Note=ATPase%2C AAA-type%2C core domain containing protein.;Transcript_evidence=AK073092 (DDBJ%2C Best hit);ORF_evidence=NP_565435.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960),ATPase family AAA domain-containing protein 3%2C domain of unknown function DUF3523 (IPR021911);NIAS_FLcDNA=J033023H03;Oryzabase=23512;Expression=AK073092;TENOR=Os02t0706500-01;KEGG=Os02t0706500-01
Chr02	irgsp1_rep	five_prime_UTR	29199147	29199234	.	+	.	Parent=Os02t0706500-01
Chr02	irgsp1_rep	CDS	29199235	29199509	.	+	0	Parent=Os02t0706500-01
Chr02	irgsp1_rep	CDS	29199598	29199697	.	+	1	Parent=Os02t0706500-01
Chr02	irgsp1_rep	CDS	29201292	29201402	.	+	0	Parent=Os02t0706500-01
Chr02	irgsp1_rep	CDS	29201491	29201800	.	+	0	Parent=Os02t0706500-01
Chr02	irgsp1_rep	CDS	29202252	29202342	.	+	2	Parent=Os02t0706500-01
Chr02	irgsp1_rep	CDS	29202483	29202792	.	+	1	Parent=Os02t0706500-01
Chr02	irgsp1_rep	CDS	29202976	29203124	.	+	0	Parent=Os02t0706500-01
Chr02	irgsp1_rep	CDS	29203421	29203925	.	+	1	Parent=Os02t0706500-01
Chr02	irgsp1_rep	three_prime_UTR	29203926	29204307	.	+	.	Parent=Os02t0706500-01
Chr02	irgsp1_rep	mRNA	29202343	29204011	.	+	.	ID=Os02t0706500-02;Name=Os02t0706500-02;Locus_id=Os02g0706500;CGSNL Gene Name=AAA-ATPASE 5;Oryzabase Gene Name Synonym(s)=OsAAA-ATPase5%2C AAA-ATPase5;Note=Similar to predicted protein.;Transcript_evidence=AK070353 (DDBJ%2C Best hit);ORF_evidence=XP_002884128.1 (RefSeq);GO=Molecular Function: ATP binding (GO:0005524);InterPro=ATPase%2C AAA-type%2C core (IPR003959);NIAS_FLcDNA=J023050A15;Oryzabase=23512;Expression=AK070353;TENOR=Os02t0706500-02;KEGG=Os02t0706500-02
Chr02	irgsp1_rep	five_prime_UTR	29202343	29202453	.	+	.	Parent=Os02t0706500-02
Chr02	irgsp1_rep	CDS	29202454	29202807	.	+	0	Parent=Os02t0706500-02
Chr02	irgsp1_rep	three_prime_UTR	29202808	29203303	.	+	.	Parent=Os02t0706500-02
Chr02	irgsp1_rep	three_prime_UTR	29203421	29204011	.	+	.	Parent=Os02t0706500-02
Chr02	irgsp1_rep	mRNA	29203375	29203913	.	-	.	ID=Os02t0706550-00;Name=Os02t0706550-00;Locus_id=Os02g0706550;Note=Hypothetical protein.;Transcript_evidence=EU963805 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0706550-00
Chr02	irgsp1_rep	five_prime_UTR	29203890	29203913	.	-	.	Parent=Os02t0706550-00
Chr02	irgsp1_rep	CDS	29203677	29203889	.	-	0	Parent=Os02t0706550-00
Chr02	irgsp1_rep	three_prime_UTR	29203375	29203676	.	-	.	Parent=Os02t0706550-00
Chr02	irgsp1_rep	mRNA	29206676	29208686	.	-	.	ID=Os02t0706600-00;Name=Os02t0706600-00;Locus_id=Os02g0706600;Oryzabase Gene Symbol Synonym(s)=OsZHD7;Oryzabase Gene Name Synonym(s)=zinc finger homeodomain class homeobox transcription factor 7;Note=Similar to zinc finger homeodomain protein 1.;Transcript_evidence=EU956759 (DDBJ);ORF_evidence=NP_001147843.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),Homeobox domain%2C ZF-HD class (IPR006455),ZF-HD homeobox protein%2C Cys/His-rich dimerisation domain (IPR006456),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);Oryzabase=15620;TENOR=Os02t0706600-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	29208401	29208686	.	-	.	Parent=Os02t0706600-00
Chr02	irgsp1_rep	five_prime_UTR	29208133	29208196	.	-	.	Parent=Os02t0706600-00
Chr02	irgsp1_rep	CDS	29206849	29208132	.	-	0	Parent=Os02t0706600-00
Chr02	irgsp1_rep	three_prime_UTR	29206676	29206848	.	-	.	Parent=Os02t0706600-00
Chr02	irgsp1_rep	mRNA	29224218	29226240	.	-	.	ID=Os02t0706900-00;Name=Os02t0706900-00;Locus_id=Os02g0706900;Note=Alpha/beta hydrolase family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001149890.1 (RefSeq);InterPro=Alpha/beta hydrolase fold-1 (IPR000073);TENOR=Os02t0706900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	29225533	29226240	.	-	0	Parent=Os02t0706900-00
Chr02	irgsp1_rep	CDS	29225007	29225096	.	-	0	Parent=Os02t0706900-00
Chr02	irgsp1_rep	CDS	29224499	29224566	.	-	0	Parent=Os02t0706900-00
Chr02	irgsp1_rep	CDS	29224218	29224371	.	-	1	Parent=Os02t0706900-00
Chr02	irgsp1_rep	mRNA	29226814	29229081	.	-	.	ID=Os02t0707000-00;Name=Os02t0707000-00;Locus_id=Os02g0707000;CGSNL Gene Symbol=MDHAR1;CGSNL Gene Name=MONODEHYDROASCORBATE REDUCTASE 1;Oryzabase Gene Symbol Synonym(s)=OsMDAR1%2C MDAR1%2C OsMDHAR1;Oryzabase Gene Name Synonym(s)=monodehydroascorbate reductase 1;Note=Similar to Monodehydroascorbate reductase%2C cytoplasmic isoform 2.;Transcript_evidence=ab initio prediction;ORF_evidence=B6TAN0 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR013027),FAD/NAD-linked reductase%2C dimerisation (IPR016156),Pyridine nucleotide-disulphide oxidoreductase%2C FAD/NAD(P)-binding domain (IPR023753);Oryzabase=19051;TENOR=Os02t0707000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	29228956	29229081	.	-	0	Parent=Os02t0707000-00
Chr02	irgsp1_rep	CDS	29228607	29228687	.	-	0	Parent=Os02t0707000-00
Chr02	irgsp1_rep	CDS	29226814	29227539	.	-	0	Parent=Os02t0707000-00
Chr02	irgsp1_rep	mRNA	29229233	29230132	.	+	.	ID=Os02t0707051-00;Name=Os02t0707051-00;Locus_id=Os02g0707051;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os02t0707051-00;KEGG=Os02t0707051-00
Chr02	irgsp1_rep	CDS	29229233	29229508	.	+	0	Parent=Os02t0707051-00
Chr02	irgsp1_rep	CDS	29230085	29230132	.	+	0	Parent=Os02t0707051-00
Chr02	irgsp1_rep	mRNA	29229969	29234195	.	-	.	ID=Os02t0707100-01;Name=Os02t0707100-01;Locus_id=Os02g0707100;RAP-DB Gene Symbol Synonym(s)=OsMDHAR4%2C OsMDAR2%2C OsMDHAR2;RAP-DB Gene Name Synonym(s)=monodehydroascorbate reductase 4%2C Monodehydroascorbate reductase 2;CGSNL Gene Symbol=MDHAR2;CGSNL Gene Name=MONODEHYDROASCORBATE REDUCTASE 2;Oryzabase Gene Symbol Synonym(s)=OsMDAR2%2C OsMDHAR2%2C MDAR2%2C OsMDHAR4%2C MDHAR4;Oryzabase Gene Name Synonym(s)=monodehydroascorbate reductase 2%2C Monodehydroascorbate reductase 4;Note=Monodehydroascorbate reductase%2C Negative regulation of tolerance to heat stress;Transcript_evidence=AK065585;ORF_evidence=Q8S3R2;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=FAD/NAD(P)-binding domain superfamily (IPR036188),FAD/NAD-linked reductase%2C dimerisation domain superfamily (IPR016156),FAD/NAD(P)-binding domain (IPR023753);NIAS_FLcDNA=J013034M23;Manual Curation=July 9%2C 2018;Literature_PMID=29951703,25546583;Oryzabase=19052;Expression=AK065585;TENOR=Os02t0707100-01;KEGG=Os02t0707100-01 (EC:1.6.5.4);Subcellular location=chloroplast (GO:0009507)
Chr02	irgsp1_rep	five_prime_UTR	29234022	29234195	.	-	.	Parent=Os02t0707100-01
Chr02	irgsp1_rep	CDS	29233899	29234021	.	-	0	Parent=Os02t0707100-01
Chr02	irgsp1_rep	CDS	29233258	29233309	.	-	0	Parent=Os02t0707100-01
Chr02	irgsp1_rep	CDS	29232520	29232600	.	-	2	Parent=Os02t0707100-01
Chr02	irgsp1_rep	CDS	29232128	29232246	.	-	2	Parent=Os02t0707100-01
Chr02	irgsp1_rep	CDS	29231783	29232002	.	-	0	Parent=Os02t0707100-01
Chr02	irgsp1_rep	CDS	29231531	29231649	.	-	2	Parent=Os02t0707100-01
Chr02	irgsp1_rep	CDS	29230182	29230898	.	-	0	Parent=Os02t0707100-01
Chr02	irgsp1_rep	three_prime_UTR	29229969	29230181	.	-	.	Parent=Os02t0707100-01
Chr02	irgsp1_rep	mRNA	29229985	29231995	.	-	.	ID=Os02t0707100-02;Name=Os02t0707100-02;Locus_id=Os02g0707100;CGSNL Gene Symbol=MDHAR2;CGSNL Gene Name=MONODEHYDROASCORBATE REDUCTASE 2;Oryzabase Gene Symbol Synonym(s)=OsMDAR2%2C OsMDHAR2%2C MDAR2%2C OsMDHAR4%2C MDHAR4;Oryzabase Gene Name Synonym(s)=monodehydroascorbate reductase 2%2C Monodehydroascorbate reductase 4;Note=Similar to Monodehydroascorbate reductase (Fragment).;Transcript_evidence=AK062096 (DDBJ%2C Best hit);ORF_evidence=Q93YH5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Pyridine nucleotide-disulphide oxidoreductase%2C NAD-binding domain (IPR001327),FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR013027),FAD/NAD-linked reductase%2C dimerisation (IPR016156),Pyridine nucleotide-disulphide oxidoreductase%2C FAD/NAD(P)-binding domain (IPR023753);NIAS_FLcDNA=001-044-H12;Oryzabase=19052;Expression=AK062096;TENOR=Os02t0707100-02;KEGG=Os02t0707100-02 (EC:1.6.5.4)
Chr02	irgsp1_rep	five_prime_UTR	29231994	29231995	.	-	.	Parent=Os02t0707100-02
Chr02	irgsp1_rep	CDS	29231783	29231993	.	-	0	Parent=Os02t0707100-02
Chr02	irgsp1_rep	CDS	29231531	29231649	.	-	2	Parent=Os02t0707100-02
Chr02	irgsp1_rep	CDS	29230182	29230898	.	-	0	Parent=Os02t0707100-02
Chr02	irgsp1_rep	three_prime_UTR	29229985	29230181	.	-	.	Parent=Os02t0707100-02
Chr02	irgsp1_rep	mRNA	29238064	29241762	.	-	.	ID=Os02t0707200-01;Name=Os02t0707200-01;Locus_id=Os02g0707200;RAP-DB Gene Symbol Synonym(s)=OsDOF11;RAP-DB Gene Name Synonym(s)=DNA BINDING WITH ONE FINGER 11;CGSNL Gene Symbol=DOF7;CGSNL Gene Name=DNA BINDING WITH ONE FINGER 7;Oryzabase Gene Symbol Synonym(s)=OsDof7%2C Dof7%2C OsDof-7;Note=Transcription factor%2C Modulation of sugar transport;Transcript_evidence=Inferred from literature;ORF_evidence=B9GCY5;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Zinc finger%2C Dof-type (IPR003851);Manual Curation=April 7%2C 2020;Literature_PMID=29656028;Oryzabase=8798;TENOR=Os02t0707200-00;Subcellular location=nucleus (GO:0005634)
Chr02	irgsp1_rep	five_prime_UTR	29241211	29241762	.	-	.	Parent=Os02t0707200-01
Chr02	irgsp1_rep	CDS	29241157	29241210	.	-	0	Parent=Os02t0707200-01
Chr02	irgsp1_rep	CDS	29238394	29239272	.	-	0	Parent=Os02t0707200-01
Chr02	irgsp1_rep	three_prime_UTR	29238064	29238393	.	-	.	Parent=Os02t0707200-01
Chr02	irgsp1_rep	mRNA	29260063	29265497	.	-	.	ID=Os02t0707900-01;Name=Os02t0707900-01;Locus_id=Os02g0707900;Note=Rossmann-like alpha/beta/alpha sandwich fold domain containing protein.;Transcript_evidence=AK064357 (DDBJ%2C Best hit);ORF_evidence=B6TGD5 (UniProt);GO=Biological Process: response to stress (GO:0006950);InterPro=Universal stress protein A (IPR006015),UspA (IPR006016),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=002-108-B05;Expression=AK064357;TENOR=Os02t0707900-01;KEGG=Os02t0707900-01
Chr02	irgsp1_rep	five_prime_UTR	29265428	29265497	.	-	.	Parent=Os02t0707900-01
Chr02	irgsp1_rep	CDS	29265244	29265427	.	-	0	Parent=Os02t0707900-01
Chr02	irgsp1_rep	CDS	29263261	29263382	.	-	2	Parent=Os02t0707900-01
Chr02	irgsp1_rep	CDS	29262974	29263092	.	-	0	Parent=Os02t0707900-01
Chr02	irgsp1_rep	CDS	29260302	29260410	.	-	1	Parent=Os02t0707900-01
Chr02	irgsp1_rep	three_prime_UTR	29260063	29260301	.	-	.	Parent=Os02t0707900-01
Chr02	irgsp1_rep	mRNA	29260085	29265446	.	-	.	ID=Os02t0707900-02;Name=Os02t0707900-02;Locus_id=Os02g0707900;Note=Rossmann-like alpha/beta/alpha sandwich fold domain containing protein.;Transcript_evidence=AK102318 (DDBJ%2C Best hit);ORF_evidence=B6TGD5 (UniProt);GO=Biological Process: response to stress (GO:0006950);InterPro=Universal stress protein A (IPR006015),UspA (IPR006016),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J033090F20;Expression=AK102318;TENOR=Os02t0707900-02;KEGG=Os02t0707900-02
Chr02	irgsp1_rep	five_prime_UTR	29265428	29265446	.	-	.	Parent=Os02t0707900-02
Chr02	irgsp1_rep	CDS	29265244	29265427	.	-	0	Parent=Os02t0707900-02
Chr02	irgsp1_rep	CDS	29263261	29263382	.	-	2	Parent=Os02t0707900-02
Chr02	irgsp1_rep	CDS	29262974	29263092	.	-	0	Parent=Os02t0707900-02
Chr02	irgsp1_rep	CDS	29260302	29260410	.	-	1	Parent=Os02t0707900-02
Chr02	irgsp1_rep	three_prime_UTR	29260085	29260301	.	-	.	Parent=Os02t0707900-02
Chr02	irgsp1_rep	mRNA	29258565	29260280	.	-	.	ID=Os02t0707900-03;Name=Os02t0707900-03;Locus_id=Os02g0707900;Note=Hypothetical conserved gene.;Transcript_evidence=AK064638 (DDBJ%2C Best hit);ORF_evidence=Q6YV27 (UniProt);NIAS_FLcDNA=002-114-A10;Expression=AK064638;TENOR=Os02t0707900-03;KEGG=Os02t0707900-03
Chr02	irgsp1_rep	five_prime_UTR	29260110	29260280	.	-	.	Parent=Os02t0707900-03
Chr02	irgsp1_rep	CDS	29259529	29260109	.	-	0	Parent=Os02t0707900-03
Chr02	irgsp1_rep	CDS	29259402	29259417	.	-	1	Parent=Os02t0707900-03
Chr02	irgsp1_rep	three_prime_UTR	29259343	29259401	.	-	.	Parent=Os02t0707900-03
Chr02	irgsp1_rep	three_prime_UTR	29258565	29259232	.	-	.	Parent=Os02t0707900-03
Chr02	irgsp1_rep	mRNA	29259387	29260291	.	+	.	ID=Os02t0708000-01;Name=Os02t0708000-01;Locus_id=Os02g0708000;Note=Conserved hypothetical protein.;Transcript_evidence=AK109110 (DDBJ%2C Best hit);ORF_evidence=A2X8S2 (UniProt);NIAS_FLcDNA=002-155-B12;Expression=AK109110;TENOR=Os02t0708000-01;KEGG=Os02t0708000-01
Chr02	irgsp1_rep	five_prime_UTR	29259387	29259515	.	+	.	Parent=Os02t0708000-01
Chr02	irgsp1_rep	CDS	29259516	29260082	.	+	0	Parent=Os02t0708000-01
Chr02	irgsp1_rep	three_prime_UTR	29260083	29260291	.	+	.	Parent=Os02t0708000-01
Chr02	irgsp1_rep	mRNA	29270114	29274376	.	+	.	ID=Os02t0708100-01;Name=Os02t0708100-01;Locus_id=Os02g0708100;Oryzabase Gene Symbol Synonym(s)=GAT1;Oryzabase Gene Name Synonym(s)=class I glutamine amidotransferase%2C glutamine amidotransferase 1;Note=Similar to Carbamoyl phosphate synthetase small subunit (EC 6.3.5.5).;Transcript_evidence=AK102055 (DDBJ%2C Best hit);ORF_evidence=B6TJA4 (UniProt);GO=Biological Process: glutamine metabolic process (GO:0006541),Biological Process: nitrogen compound metabolic process (GO:0006807),Molecular Function: catalytic activity (GO:0003824);InterPro=Carbamoyl-phosphate synthase%2C GATase domain (IPR001317),Carbamoyl-phosphate synthase%2C small subunit%2C N-terminal (IPR002474),Carbamoyl-phosphate synthase%2C small subunit (IPR006274),Glutamine amidotransferase superfamily (IPR011702),Glutamine amidotransferase type 1 (IPR017926);NIAS_FLcDNA=J033082C21;Oryzabase=11681;Expression=AK102055;TENOR=Os02t0708100-01;KEGG=Os02t0708100-01 (EC:6.3.5.5)
Chr02	irgsp1_rep	five_prime_UTR	29270114	29270212	.	+	.	Parent=Os02t0708100-01
Chr02	irgsp1_rep	CDS	29270213	29270371	.	+	0	Parent=Os02t0708100-01
Chr02	irgsp1_rep	CDS	29270621	29270663	.	+	0	Parent=Os02t0708100-01
Chr02	irgsp1_rep	CDS	29270831	29270957	.	+	2	Parent=Os02t0708100-01
Chr02	irgsp1_rep	CDS	29271122	29271210	.	+	1	Parent=Os02t0708100-01
Chr02	irgsp1_rep	CDS	29271301	29271361	.	+	2	Parent=Os02t0708100-01
Chr02	irgsp1_rep	CDS	29271451	29271518	.	+	1	Parent=Os02t0708100-01
Chr02	irgsp1_rep	CDS	29271606	29271734	.	+	2	Parent=Os02t0708100-01
Chr02	irgsp1_rep	CDS	29272527	29272633	.	+	2	Parent=Os02t0708100-01
Chr02	irgsp1_rep	CDS	29272717	29273064	.	+	0	Parent=Os02t0708100-01
Chr02	irgsp1_rep	CDS	29273310	29273411	.	+	0	Parent=Os02t0708100-01
Chr02	irgsp1_rep	three_prime_UTR	29273412	29273419	.	+	.	Parent=Os02t0708100-01
Chr02	irgsp1_rep	three_prime_UTR	29273838	29274003	.	+	.	Parent=Os02t0708100-01
Chr02	irgsp1_rep	three_prime_UTR	29274116	29274376	.	+	.	Parent=Os02t0708100-01
Chr02	irgsp1_rep	mRNA	29270117	29274378	.	+	.	ID=Os02t0708100-02;Name=Os02t0708100-02;Locus_id=Os02g0708100;Oryzabase Gene Symbol Synonym(s)=GAT1;Oryzabase Gene Name Synonym(s)=class I glutamine amidotransferase%2C glutamine amidotransferase 1;Note=Similar to Carbamoyl-phosphate synthase small chain.;Transcript_evidence=AK059630 (DDBJ%2C Best hit);ORF_evidence=B6TJA4 (UniProt);GO=Biological Process: glutamine metabolic process (GO:0006541),Biological Process: nitrogen compound metabolic process (GO:0006807),Molecular Function: catalytic activity (GO:0003824);InterPro=Carbamoyl-phosphate synthase%2C GATase domain (IPR001317),Carbamoyl-phosphate synthase%2C small subunit%2C N-terminal (IPR002474),Carbamoyl-phosphate synthase%2C small subunit (IPR006274),Glutamine amidotransferase superfamily (IPR011702),Glutamine amidotransferase type 1 (IPR017926);NIAS_FLcDNA=001-031-A02;Oryzabase=11681;Expression=AK059630;TENOR=Os02t0708100-02;KEGG=Os02t0708100-02 (EC:6.3.5.5)
Chr02	irgsp1_rep	five_prime_UTR	29270117	29270212	.	+	.	Parent=Os02t0708100-02
Chr02	irgsp1_rep	CDS	29270213	29270371	.	+	0	Parent=Os02t0708100-02
Chr02	irgsp1_rep	CDS	29270621	29270663	.	+	0	Parent=Os02t0708100-02
Chr02	irgsp1_rep	CDS	29270831	29270957	.	+	2	Parent=Os02t0708100-02
Chr02	irgsp1_rep	CDS	29271122	29271210	.	+	1	Parent=Os02t0708100-02
Chr02	irgsp1_rep	CDS	29271301	29271361	.	+	2	Parent=Os02t0708100-02
Chr02	irgsp1_rep	CDS	29271451	29271518	.	+	1	Parent=Os02t0708100-02
Chr02	irgsp1_rep	CDS	29271606	29271734	.	+	2	Parent=Os02t0708100-02
Chr02	irgsp1_rep	CDS	29272527	29272633	.	+	2	Parent=Os02t0708100-02
Chr02	irgsp1_rep	CDS	29272717	29273064	.	+	0	Parent=Os02t0708100-02
Chr02	irgsp1_rep	CDS	29273310	29273390	.	+	0	Parent=Os02t0708100-02
Chr02	irgsp1_rep	CDS	29273838	29274003	.	+	0	Parent=Os02t0708100-02
Chr02	irgsp1_rep	CDS	29274116	29274159	.	+	2	Parent=Os02t0708100-02
Chr02	irgsp1_rep	three_prime_UTR	29274160	29274378	.	+	.	Parent=Os02t0708100-02
Chr02	irgsp1_rep	mRNA	29272540	29274643	.	+	.	ID=Os02t0708100-03;Name=Os02t0708100-03;Locus_id=Os02g0708100;Oryzabase Gene Symbol Synonym(s)=GAT1;Oryzabase Gene Name Synonym(s)=class I glutamine amidotransferase%2C glutamine amidotransferase 1;Note=Similar to Carbamoyl-phosphate synthase small chain.;Transcript_evidence=AK059653 (DDBJ%2C Best hit);ORF_evidence=B6TA70 (UniProt);GO=Biological Process: glutamine metabolic process (GO:0006541),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824);InterPro=Carbamoyl-phosphate synthase%2C GATase domain (IPR001317),Anthranilate synthase component II/delta crystallin (IPR006220),Glutamine amidotransferase superfamily (IPR011702),Glutamine amidotransferase type 1 (IPR017926);NIAS_FLcDNA=001-031-C09;Oryzabase=11681;Expression=AK059653;TENOR=Os02t0708100-03;KEGG=Os02t0708100-03 (EC:6.3.5.5)
Chr02	irgsp1_rep	five_prime_UTR	29272540	29272540	.	+	.	Parent=Os02t0708100-03
Chr02	irgsp1_rep	CDS	29272541	29272633	.	+	0	Parent=Os02t0708100-03
Chr02	irgsp1_rep	CDS	29272717	29273064	.	+	0	Parent=Os02t0708100-03
Chr02	irgsp1_rep	CDS	29273838	29274003	.	+	0	Parent=Os02t0708100-03
Chr02	irgsp1_rep	CDS	29274116	29274159	.	+	2	Parent=Os02t0708100-03
Chr02	irgsp1_rep	three_prime_UTR	29274160	29274643	.	+	.	Parent=Os02t0708100-03
Chr02	irgsp1_rep	mRNA	29277662	29283858	.	+	.	ID=Os02t0708200-01;Name=Os02t0708200-01;Locus_id=Os02g0708200;Note=Uridine kinase family protein.;Transcript_evidence=AK102236 (DDBJ%2C Best hit);ORF_evidence=E6NU51 (UniProt);GO=Biological Process: phosphate-containing compound metabolic process (GO:0006796),Biological Process: metabolic process (GO:0008152),Molecular Function: ATP binding (GO:0005524),Molecular Function: kinase activity (GO:0016301),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Uridine kinase (IPR000764),Phosphoribulokinase/uridine kinase (IPR006083),CYTH domain (IPR008172),CYTH-like domain (IPR023577);NIAS_FLcDNA=J033088C10;Expression=AK102236;TENOR=Os02t0708200-01;KEGG=Os02t0708200-01
Chr02	irgsp1_rep	five_prime_UTR	29277662	29277900	.	+	.	Parent=Os02t0708200-01
Chr02	irgsp1_rep	five_prime_UTR	29278691	29278697	.	+	.	Parent=Os02t0708200-01
Chr02	irgsp1_rep	CDS	29278698	29279034	.	+	0	Parent=Os02t0708200-01
Chr02	irgsp1_rep	CDS	29279354	29279468	.	+	2	Parent=Os02t0708200-01
Chr02	irgsp1_rep	CDS	29279567	29279762	.	+	1	Parent=Os02t0708200-01
Chr02	irgsp1_rep	CDS	29279934	29280047	.	+	0	Parent=Os02t0708200-01
Chr02	irgsp1_rep	CDS	29280202	29280375	.	+	0	Parent=Os02t0708200-01
Chr02	irgsp1_rep	CDS	29280833	29281027	.	+	0	Parent=Os02t0708200-01
Chr02	irgsp1_rep	CDS	29281173	29281295	.	+	0	Parent=Os02t0708200-01
Chr02	irgsp1_rep	CDS	29281399	29281511	.	+	0	Parent=Os02t0708200-01
Chr02	irgsp1_rep	CDS	29281624	29281744	.	+	1	Parent=Os02t0708200-01
Chr02	irgsp1_rep	CDS	29281870	29282130	.	+	0	Parent=Os02t0708200-01
Chr02	irgsp1_rep	CDS	29283219	29283428	.	+	0	Parent=Os02t0708200-01
Chr02	irgsp1_rep	three_prime_UTR	29283429	29283858	.	+	.	Parent=Os02t0708200-01
Chr02	irgsp1_rep	mRNA	29285009	29287551	.	+	.	ID=Os02t0708300-01;Name=Os02t0708300-01;Locus_id=Os02g0708300;Oryzabase Gene Symbol Synonym(s)=OsRBX1a%2C RBX1a;Oryzabase Gene Name Synonym(s)=RING-BOX1a;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK066348 (DDBJ%2C Best hit);ORF_evidence=NP_568396.1 (RefSeq);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J013059F24;Oryzabase=21603;Expression=AK066348;TENOR=Os02t0708300-01;KEGG=Os02t0708300-01
Chr02	irgsp1_rep	five_prime_UTR	29285009	29285064	.	+	.	Parent=Os02t0708300-01
Chr02	irgsp1_rep	CDS	29285065	29285188	.	+	0	Parent=Os02t0708300-01
Chr02	irgsp1_rep	CDS	29285304	29285413	.	+	2	Parent=Os02t0708300-01
Chr02	irgsp1_rep	three_prime_UTR	29285414	29287176	.	+	.	Parent=Os02t0708300-01
Chr02	irgsp1_rep	three_prime_UTR	29287266	29287551	.	+	.	Parent=Os02t0708300-01
Chr02	irgsp1_rep	mRNA	29287709	29291570	.	-	.	ID=Os02t0708400-01;Name=Os02t0708400-01;Locus_id=Os02g0708400;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK068408 (DDBJ%2C Best hit);ORF_evidence=C3SA60 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide TPR-1 (IPR001440),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J013151N03;Expression=AK068408;TENOR=Os02t0708400-01;KEGG=Os02t0708400-01
Chr02	irgsp1_rep	five_prime_UTR	29291409	29291570	.	-	.	Parent=Os02t0708400-01
Chr02	irgsp1_rep	five_prime_UTR	29291173	29291223	.	-	.	Parent=Os02t0708400-01
Chr02	irgsp1_rep	CDS	29289251	29291172	.	-	0	Parent=Os02t0708400-01
Chr02	irgsp1_rep	CDS	29288069	29288282	.	-	1	Parent=Os02t0708400-01
Chr02	irgsp1_rep	three_prime_UTR	29287709	29288068	.	-	.	Parent=Os02t0708400-01
Chr02	irgsp1_rep	mRNA	29294574	29299504	.	+	.	ID=Os02t0708500-01;Name=Os02t0708500-01;Locus_id=Os02g0708500;Note=Conserved hypothetical protein.;Transcript_evidence=AK106720 (DDBJ%2C Best hit);ORF_evidence=B9F216 (UniProt);NIAS_FLcDNA=002-114-G07;Expression=AK106720;TENOR=Os02t0708500-01;KEGG=Os02t0708500-01
Chr02	irgsp1_rep	five_prime_UTR	29294574	29294780	.	+	.	Parent=Os02t0708500-01
Chr02	irgsp1_rep	five_prime_UTR	29295874	29295992	.	+	.	Parent=Os02t0708500-01
Chr02	irgsp1_rep	CDS	29295993	29296826	.	+	0	Parent=Os02t0708500-01
Chr02	irgsp1_rep	CDS	29298946	29299248	.	+	0	Parent=Os02t0708500-01
Chr02	irgsp1_rep	CDS	29299330	29299503	.	+	0	Parent=Os02t0708500-01
Chr02	irgsp1_rep	three_prime_UTR	29299504	29299504	.	+	.	Parent=Os02t0708500-01
Chr02	irgsp1_rep	mRNA	29303049	29307140	.	+	.	ID=Os02t0708600-01;Name=Os02t0708600-01;Locus_id=Os02g0708600;Oryzabase Gene Symbol Synonym(s)=OsSET11%2C SDG706;Oryzabase Gene Name Synonym(s)=SET protein 11;Note=SET domain containing protein.;Transcript_evidence=AK108743 (DDBJ%2C Best hit);ORF_evidence=NP_001105206.1 (RefSeq);GO=Biological Process: histone lysine methylation (GO:0034968),Cellular Component: intracellular (GO:0005622),Cellular Component: nucleus (GO:0005634),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: histone-lysine N-methyltransferase activity (GO:0018024);InterPro=SET domain (IPR001214),Post-SET domain (IPR003616),Zinc finger%2C C2H2 (IPR007087),Pre-SET domain (IPR007728),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=002-150-E07;Oryzabase=13377;Expression=AK108743;TENOR=Os02t0708600-01;KEGG=Os02t0708600-01
Chr02	irgsp1_rep	five_prime_UTR	29303049	29303049	.	+	.	Parent=Os02t0708600-01
Chr02	irgsp1_rep	CDS	29303050	29304018	.	+	0	Parent=Os02t0708600-01
Chr02	irgsp1_rep	CDS	29304166	29304327	.	+	0	Parent=Os02t0708600-01
Chr02	irgsp1_rep	CDS	29305640	29305756	.	+	0	Parent=Os02t0708600-01
Chr02	irgsp1_rep	CDS	29305867	29305976	.	+	0	Parent=Os02t0708600-01
Chr02	irgsp1_rep	CDS	29306232	29306369	.	+	1	Parent=Os02t0708600-01
Chr02	irgsp1_rep	CDS	29306509	29306596	.	+	1	Parent=Os02t0708600-01
Chr02	irgsp1_rep	CDS	29306670	29306777	.	+	0	Parent=Os02t0708600-01
Chr02	irgsp1_rep	three_prime_UTR	29306778	29307140	.	+	.	Parent=Os02t0708600-01
Chr02	irgsp1_rep	mRNA	29318628	29320855	.	+	.	ID=Os02t0709000-00;Name=Os02t0709000-00;Locus_id=Os02g0709000;Note=Exonuclease domain containing protein.;Transcript_evidence=EU960018 (DDBJ);ORF_evidence=Q8S3S6 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: exonuclease activity (GO:0004527),Molecular Function: zinc ion binding (GO:0008270);InterPro=Exonuclease (IPR006055),Zinc finger%2C C2H2 (IPR007087),Ribonuclease H-like (IPR012337),Exonuclease%2C RNase T/DNA polymerase III (IPR013520);TENOR=Os02t0709000-00;KEGG=Os02t0709000-00
Chr02	irgsp1_rep	CDS	29318628	29318665	.	+	0	Parent=Os02t0709000-00
Chr02	irgsp1_rep	CDS	29319053	29319204	.	+	1	Parent=Os02t0709000-00
Chr02	irgsp1_rep	CDS	29319316	29319449	.	+	2	Parent=Os02t0709000-00
Chr02	irgsp1_rep	CDS	29319545	29319714	.	+	0	Parent=Os02t0709000-00
Chr02	irgsp1_rep	CDS	29319967	29320176	.	+	1	Parent=Os02t0709000-00
Chr02	irgsp1_rep	CDS	29320267	29320347	.	+	1	Parent=Os02t0709000-00
Chr02	irgsp1_rep	CDS	29320444	29320672	.	+	1	Parent=Os02t0709000-00
Chr02	irgsp1_rep	three_prime_UTR	29320673	29320855	.	+	.	Parent=Os02t0709000-00
Chr02	irgsp1_rep	mRNA	29320904	29322993	.	-	.	ID=Os02t0709100-01;Name=Os02t0709100-01;Locus_id=Os02g0709100;Note=Conserved hypothetical protein.;Transcript_evidence=AK111003 (DDBJ%2C Best hit);ORF_evidence=Q8S3S7 (UniProt);NIAS_FLcDNA=002-174-F02;TENOR=Os02t0709100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	29322387	29322993	.	-	0	Parent=Os02t0709100-01
Chr02	irgsp1_rep	CDS	29321156	29321610	.	-	2	Parent=Os02t0709100-01
Chr02	irgsp1_rep	three_prime_UTR	29320904	29321155	.	-	.	Parent=Os02t0709100-01
Chr02	irgsp1_rep	mRNA	29324774	29328372	.	-	.	ID=Os02t0709200-01;Name=Os02t0709200-01;Locus_id=Os02g0709200;Note=Similar to Histidinol-phosphate aminotransferase%2C chloroplast precursor (EC 2.6.1.9) (Imidazole acetol-phosphate transaminase).;Transcript_evidence=AK058999 (DDBJ%2C Best hit),AK099074 (DDBJ%2C Best hit);ORF_evidence=B6TRS1 (UniProt);GO=Biological Process: histidine biosynthetic process (GO:0000105),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: histidinol-phosphate transaminase activity (GO:0004400),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferase%2C class I/classII (IPR004839),Histidinol-phosphate aminotransferase (IPR005861),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=001-020-G08,J023002D16;TENOR=Os02t0709200-01
Chr02	irgsp1_rep	five_prime_UTR	29328303	29328372	.	-	.	Parent=Os02t0709200-01
Chr02	irgsp1_rep	CDS	29328048	29328302	.	-	0	Parent=Os02t0709200-01
Chr02	irgsp1_rep	CDS	29327707	29327790	.	-	0	Parent=Os02t0709200-01
Chr02	irgsp1_rep	CDS	29327233	29327387	.	-	0	Parent=Os02t0709200-01
Chr02	irgsp1_rep	CDS	29327013	29327110	.	-	1	Parent=Os02t0709200-01
Chr02	irgsp1_rep	CDS	29326768	29326876	.	-	2	Parent=Os02t0709200-01
Chr02	irgsp1_rep	CDS	29326511	29326668	.	-	1	Parent=Os02t0709200-01
Chr02	irgsp1_rep	CDS	29326003	29326145	.	-	2	Parent=Os02t0709200-01
Chr02	irgsp1_rep	CDS	29325768	29325908	.	-	0	Parent=Os02t0709200-01
Chr02	irgsp1_rep	CDS	29325055	29325189	.	-	0	Parent=Os02t0709200-01
Chr02	irgsp1_rep	three_prime_UTR	29324774	29325054	.	-	.	Parent=Os02t0709200-01
Chr02	irgsp1_rep	mRNA	29330530	29331339	.	-	.	ID=Os02t0709300-01;Name=Os02t0709300-01;Locus_id=Os02g0709300;Note=Conserved hypothetical protein.;Transcript_evidence=AK109446 (DDBJ%2C Best hit);ORF_evidence=B8AHB6 (UniProt);NIAS_FLcDNA=001-104-A09;Expression=AK109446;TENOR=Os02t0709300-01;KEGG=Os02t0709300-01
Chr02	irgsp1_rep	five_prime_UTR	29331216	29331339	.	-	.	Parent=Os02t0709300-01
Chr02	irgsp1_rep	CDS	29330661	29331215	.	-	0	Parent=Os02t0709300-01
Chr02	irgsp1_rep	three_prime_UTR	29330530	29330660	.	-	.	Parent=Os02t0709300-01
Chr02	irgsp1_rep	mRNA	29336790	29337561	.	+	.	ID=Os02t0709350-00;Name=Os02t0709350-00;Locus_id=Os02g0709350;Note=Hypothetical conserved gene.;Transcript_evidence=CT835483 (DDBJ%2C Best hit);ORF_evidence=Q8S3T0 (UniProt);TENOR=Os02t0709350-00;KEGG=Os02t0709350-00
Chr02	irgsp1_rep	five_prime_UTR	29336790	29336934	.	+	.	Parent=Os02t0709350-00
Chr02	irgsp1_rep	CDS	29336935	29337333	.	+	0	Parent=Os02t0709350-00
Chr02	irgsp1_rep	three_prime_UTR	29337334	29337561	.	+	.	Parent=Os02t0709350-00
Chr02	irgsp1_rep	mRNA	29341254	29353549	.	+	.	ID=Os02t0709400-01;Name=Os02t0709400-01;Locus_id=Os02g0709400;CGSNL Gene Symbol=ADL1;CGSNL Gene Name=ADAXIALIZED LEAF 1;Oryzabase Gene Symbol Synonym(s)=adl1;Oryzabase Gene Name Synonym(s)=adaxialized leaf-1%2C ADAXIALIZED LEAF1%2C shootless 3%2C Dek1-calpain-like protein;Note=Similar to Dek1-calpain-like protein.;Transcript_evidence=AK121261 (DDBJ%2C Best hit);ORF_evidence=Q8RYA5 (UniProt);InterPro=Concanavalin A-like lectin/glucanase (IPR008985),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320);NIAS_FLcDNA=J023104H13;Oryzabase=2219;TENOR=Os02t0709400-01
Chr02	irgsp1_rep	five_prime_UTR	29341254	29341507	.	+	.	Parent=Os02t0709400-01
Chr02	irgsp1_rep	five_prime_UTR	29342990	29343048	.	+	.	Parent=Os02t0709400-01
Chr02	irgsp1_rep	CDS	29343049	29343176	.	+	0	Parent=Os02t0709400-01
Chr02	irgsp1_rep	CDS	29343598	29343848	.	+	1	Parent=Os02t0709400-01
Chr02	irgsp1_rep	CDS	29344327	29344509	.	+	2	Parent=Os02t0709400-01
Chr02	irgsp1_rep	CDS	29344606	29344741	.	+	2	Parent=Os02t0709400-01
Chr02	irgsp1_rep	CDS	29344884	29345014	.	+	1	Parent=Os02t0709400-01
Chr02	irgsp1_rep	CDS	29345090	29345204	.	+	2	Parent=Os02t0709400-01
Chr02	irgsp1_rep	CDS	29345288	29346326	.	+	1	Parent=Os02t0709400-01
Chr02	irgsp1_rep	CDS	29346411	29346521	.	+	0	Parent=Os02t0709400-01
Chr02	irgsp1_rep	CDS	29346775	29346833	.	+	0	Parent=Os02t0709400-01
Chr02	irgsp1_rep	CDS	29348108	29348270	.	+	1	Parent=Os02t0709400-01
Chr02	irgsp1_rep	CDS	29348669	29348942	.	+	0	Parent=Os02t0709400-01
Chr02	irgsp1_rep	CDS	29349037	29349187	.	+	2	Parent=Os02t0709400-01
Chr02	irgsp1_rep	CDS	29349273	29349384	.	+	1	Parent=Os02t0709400-01
Chr02	irgsp1_rep	CDS	29349485	29349650	.	+	0	Parent=Os02t0709400-01
Chr02	irgsp1_rep	CDS	29349768	29349838	.	+	2	Parent=Os02t0709400-01
Chr02	irgsp1_rep	CDS	29349981	29350072	.	+	0	Parent=Os02t0709400-01
Chr02	irgsp1_rep	CDS	29350228	29350390	.	+	1	Parent=Os02t0709400-01
Chr02	irgsp1_rep	CDS	29350641	29350712	.	+	0	Parent=Os02t0709400-01
Chr02	irgsp1_rep	CDS	29351046	29351417	.	+	0	Parent=Os02t0709400-01
Chr02	irgsp1_rep	CDS	29351498	29351613	.	+	0	Parent=Os02t0709400-01
Chr02	irgsp1_rep	CDS	29351708	29352005	.	+	1	Parent=Os02t0709400-01
Chr02	irgsp1_rep	CDS	29352327	29352646	.	+	0	Parent=Os02t0709400-01
Chr02	irgsp1_rep	CDS	29352839	29353189	.	+	1	Parent=Os02t0709400-01
Chr02	irgsp1_rep	CDS	29353491	29353549	.	+	1	Parent=Os02t0709400-01
Chr02	irgsp1_rep	mRNA	29341302	29353549	.	+	.	ID=Os02t0709400-02;Name=Os02t0709400-02;Locus_id=Os02g0709400;CGSNL Gene Symbol=ADL1;CGSNL Gene Name=ADAXIALIZED LEAF 1;Oryzabase Gene Symbol Synonym(s)=adl1;Oryzabase Gene Name Synonym(s)=adaxialized leaf-1%2C ADAXIALIZED LEAF1%2C shootless 3%2C Dek1-calpain-like protein;Note=Similar to Dek1-calpain-like protein.;Transcript_evidence=AK121875 (DDBJ%2C Best hit);ORF_evidence=Q8RYA5 (UniProt);InterPro=Concanavalin A-like lectin/glucanase (IPR008985),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320);NIAS_FLcDNA=J033104H09;Oryzabase=2219;TENOR=Os02t0709400-02
Chr02	irgsp1_rep	five_prime_UTR	29341302	29341507	.	+	.	Parent=Os02t0709400-02
Chr02	irgsp1_rep	five_prime_UTR	29342990	29343048	.	+	.	Parent=Os02t0709400-02
Chr02	irgsp1_rep	CDS	29343049	29343176	.	+	0	Parent=Os02t0709400-02
Chr02	irgsp1_rep	CDS	29343598	29343848	.	+	1	Parent=Os02t0709400-02
Chr02	irgsp1_rep	CDS	29344327	29344509	.	+	2	Parent=Os02t0709400-02
Chr02	irgsp1_rep	CDS	29344606	29344741	.	+	2	Parent=Os02t0709400-02
Chr02	irgsp1_rep	CDS	29344884	29345014	.	+	1	Parent=Os02t0709400-02
Chr02	irgsp1_rep	CDS	29345090	29345204	.	+	2	Parent=Os02t0709400-02
Chr02	irgsp1_rep	CDS	29345288	29346326	.	+	1	Parent=Os02t0709400-02
Chr02	irgsp1_rep	CDS	29346411	29346521	.	+	0	Parent=Os02t0709400-02
Chr02	irgsp1_rep	CDS	29346775	29346833	.	+	0	Parent=Os02t0709400-02
Chr02	irgsp1_rep	CDS	29348108	29348270	.	+	1	Parent=Os02t0709400-02
Chr02	irgsp1_rep	CDS	29348669	29348942	.	+	0	Parent=Os02t0709400-02
Chr02	irgsp1_rep	CDS	29349037	29349187	.	+	2	Parent=Os02t0709400-02
Chr02	irgsp1_rep	CDS	29349273	29349384	.	+	1	Parent=Os02t0709400-02
Chr02	irgsp1_rep	CDS	29349485	29349650	.	+	0	Parent=Os02t0709400-02
Chr02	irgsp1_rep	CDS	29349768	29349838	.	+	2	Parent=Os02t0709400-02
Chr02	irgsp1_rep	CDS	29349981	29350072	.	+	0	Parent=Os02t0709400-02
Chr02	irgsp1_rep	CDS	29350228	29350390	.	+	1	Parent=Os02t0709400-02
Chr02	irgsp1_rep	CDS	29350641	29350712	.	+	0	Parent=Os02t0709400-02
Chr02	irgsp1_rep	CDS	29351046	29351417	.	+	0	Parent=Os02t0709400-02
Chr02	irgsp1_rep	CDS	29351498	29351613	.	+	0	Parent=Os02t0709400-02
Chr02	irgsp1_rep	CDS	29351708	29352005	.	+	1	Parent=Os02t0709400-02
Chr02	irgsp1_rep	CDS	29352327	29352646	.	+	0	Parent=Os02t0709400-02
Chr02	irgsp1_rep	CDS	29352839	29353189	.	+	1	Parent=Os02t0709400-02
Chr02	irgsp1_rep	CDS	29353491	29353549	.	+	1	Parent=Os02t0709400-02
Chr02	irgsp1_rep	mRNA	29351204	29357890	.	+	.	ID=Os02t0709400-03;Name=Os02t0709400-03;Locus_id=Os02g0709400;CGSNL Gene Symbol=ADL1;CGSNL Gene Name=ADAXIALIZED LEAF 1;Oryzabase Gene Symbol Synonym(s)=adl1;Oryzabase Gene Name Synonym(s)=adaxialized leaf-1%2C ADAXIALIZED LEAF1%2C shootless 3%2C Dek1-calpain-like protein;Note=Similar to Dek1-calpain-like protein.;Transcript_evidence=AK064381 (DDBJ%2C Best hit);ORF_evidence=Q8RYA5 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Cellular Component: intracellular (GO:0005622),Molecular Function: cysteine-type endopeptidase activity (GO:0004197),Molecular Function: calcium-dependent cysteine-type endopeptidase activity (GO:0004198);InterPro=Peptidase%2C cysteine peptidase active site (IPR000169),Peptidase C2%2C calpain%2C catalytic domain (IPR001300),Concanavalin A-like lectin/glucanase (IPR008985),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Peptidase C2%2C calpain%2C large subunit%2C domain III (IPR022682),Peptidase C2%2C calpain%2C domain III (IPR022683),Peptidase C2%2C calpain family (IPR022684);NIAS_FLcDNA=002-108-E01;Oryzabase=2219;Expression=AK064381;TENOR=Os02t0709400-03;KEGG=Os02t0709400-03
Chr02	irgsp1_rep	five_prime_UTR	29351204	29351204	.	+	.	Parent=Os02t0709400-03
Chr02	irgsp1_rep	CDS	29351205	29351417	.	+	0	Parent=Os02t0709400-03
Chr02	irgsp1_rep	CDS	29351498	29351613	.	+	0	Parent=Os02t0709400-03
Chr02	irgsp1_rep	CDS	29351708	29352005	.	+	1	Parent=Os02t0709400-03
Chr02	irgsp1_rep	CDS	29352327	29352646	.	+	0	Parent=Os02t0709400-03
Chr02	irgsp1_rep	CDS	29352839	29353189	.	+	1	Parent=Os02t0709400-03
Chr02	irgsp1_rep	CDS	29353491	29353809	.	+	1	Parent=Os02t0709400-03
Chr02	irgsp1_rep	CDS	29353930	29354034	.	+	0	Parent=Os02t0709400-03
Chr02	irgsp1_rep	CDS	29354155	29354283	.	+	0	Parent=Os02t0709400-03
Chr02	irgsp1_rep	CDS	29355508	29355888	.	+	0	Parent=Os02t0709400-03
Chr02	irgsp1_rep	CDS	29355974	29356111	.	+	0	Parent=Os02t0709400-03
Chr02	irgsp1_rep	CDS	29356456	29356692	.	+	0	Parent=Os02t0709400-03
Chr02	irgsp1_rep	CDS	29356771	29357076	.	+	0	Parent=Os02t0709400-03
Chr02	irgsp1_rep	three_prime_UTR	29357077	29357197	.	+	.	Parent=Os02t0709400-03
Chr02	irgsp1_rep	three_prime_UTR	29357382	29357890	.	+	.	Parent=Os02t0709400-03
Chr02	irgsp1_rep	mRNA	29355506	29357881	.	+	.	ID=Os02t0709400-04;Name=Os02t0709400-04;Locus_id=Os02g0709400;CGSNL Gene Symbol=ADL1;CGSNL Gene Name=ADAXIALIZED LEAF 1;Oryzabase Gene Symbol Synonym(s)=adl1;Oryzabase Gene Name Synonym(s)=adaxialized leaf-1%2C ADAXIALIZED LEAF1%2C shootless 3%2C Dek1-calpain-like protein;Note=Similar to Dek1-calpain-like protein.;Transcript_evidence=AK072218 (DDBJ%2C Best hit);ORF_evidence=Q8RYA5 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Cellular Component: intracellular (GO:0005622),Molecular Function: calcium-dependent cysteine-type endopeptidase activity (GO:0004198);InterPro=Peptidase C2%2C calpain%2C catalytic domain (IPR001300),Peptidase C2%2C calpain%2C large subunit%2C domain III (IPR022682),Peptidase C2%2C calpain%2C domain III (IPR022683),Peptidase C2%2C calpain family (IPR022684);NIAS_FLcDNA=J013167O21;Oryzabase=2219;Expression=AK072218;TENOR=Os02t0709400-04;KEGG=Os02t0709400-04
Chr02	irgsp1_rep	five_prime_UTR	29355506	29355507	.	+	.	Parent=Os02t0709400-04
Chr02	irgsp1_rep	CDS	29355508	29355888	.	+	0	Parent=Os02t0709400-04
Chr02	irgsp1_rep	CDS	29355974	29356111	.	+	0	Parent=Os02t0709400-04
Chr02	irgsp1_rep	CDS	29356456	29356692	.	+	0	Parent=Os02t0709400-04
Chr02	irgsp1_rep	CDS	29356771	29357076	.	+	0	Parent=Os02t0709400-04
Chr02	irgsp1_rep	three_prime_UTR	29357077	29357197	.	+	.	Parent=Os02t0709400-04
Chr02	irgsp1_rep	three_prime_UTR	29357382	29357881	.	+	.	Parent=Os02t0709400-04
Chr02	irgsp1_rep	mRNA	29364087	29365508	.	+	.	ID=Os02t0709600-01;Name=Os02t0709600-01;Locus_id=Os02g0709600;CGSNL Gene Symbol=MIZ1;CGSNL Gene Name=MIZU-KUSSEI1;Oryzabase Gene Symbol Synonym(s)=OsMIZ1;Oryzabase Gene Name Synonym(s)=MIZU-KUSSEI 1;Note=Protein of unknown function DUF617%2C plant family protein.;Transcript_evidence=AK063563 (DDBJ%2C Best hit);ORF_evidence=B6TX93 (UniProt);InterPro=Protein of unknown function DUF617%2C plant (IPR006460);NIAS_FLcDNA=001-117-F05;Oryzabase=23464;Expression=AK063563;TENOR=Os02t0709600-01;KEGG=Os02t0709600-01
Chr02	irgsp1_rep	five_prime_UTR	29364087	29364202	.	+	.	Parent=Os02t0709600-01
Chr02	irgsp1_rep	CDS	29364203	29364531	.	+	0	Parent=Os02t0709600-01
Chr02	irgsp1_rep	CDS	29364661	29364758	.	+	1	Parent=Os02t0709600-01
Chr02	irgsp1_rep	CDS	29364883	29365199	.	+	2	Parent=Os02t0709600-01
Chr02	irgsp1_rep	three_prime_UTR	29365200	29365508	.	+	.	Parent=Os02t0709600-01
Chr02	irgsp1_rep	mRNA	29364087	29365431	.	+	.	ID=Os02t0709600-02;Name=Os02t0709600-02;Locus_id=Os02g0709600;RAP-DB Gene Symbol Synonym(s)=OsMIZ1;RAP-DB Gene Name Synonym(s)=MIZU-KUSSEI1;CGSNL Gene Symbol=MIZ1;CGSNL Gene Name=MIZU-KUSSEI1;Oryzabase Gene Symbol Synonym(s)=OsMIZ1;Oryzabase Gene Name Synonym(s)=MIZU-KUSSEI 1;Note=Ortholog of Arabidopsis MIZU-KUSSEI1 (MIZ1)%2C DUF617 domain containing protein%2C Drought and salt stress tolerance;Transcript_evidence=AK101923;ORF_evidence=A0A0X9DB50;GO=Biological Process: hydrotropism (GO:0010274);InterPro=Protein MIZU-KUSSEI 1-like%2C plant (IPR006460);NIAS_FLcDNA=J033071M08;Manual Curation=January 23%2C 2020;Literature_PMID=31786672;Oryzabase=23464;Expression=AK101923;TENOR=Os02t0709600-02
Chr02	irgsp1_rep	five_prime_UTR	29364087	29364202	.	+	.	Parent=Os02t0709600-02
Chr02	irgsp1_rep	CDS	29364203	29364758	.	+	0	Parent=Os02t0709600-02
Chr02	irgsp1_rep	CDS	29364883	29365199	.	+	2	Parent=Os02t0709600-02
Chr02	irgsp1_rep	three_prime_UTR	29365200	29365431	.	+	.	Parent=Os02t0709600-02
Chr02	irgsp1_rep	mRNA	29364402	29365169	.	-	.	ID=Os02t0709701-00;Name=Os02t0709701-00;Locus_id=Os02g0709701;Note=Hypothetical protein.;Transcript_evidence=EU968656 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0709701-00
Chr02	irgsp1_rep	CDS	29364870	29365169	.	-	0	Parent=Os02t0709701-00
Chr02	irgsp1_rep	CDS	29364673	29364747	.	-	0	Parent=Os02t0709701-00
Chr02	irgsp1_rep	three_prime_UTR	29364402	29364672	.	-	.	Parent=Os02t0709701-00
Chr02	irgsp1_rep	mRNA	29373020	29381086	.	-	.	ID=Os02t0709800-01;Name=Os02t0709800-01;Locus_id=Os02g0709800;RAP-DB Gene Symbol Synonym(s)=OsGAP1;RAP-DB Gene Name Synonym(s)=GTPase-activating protein 1;Oryzabase Gene Symbol Synonym(s)=OsGAP1%2C GAP1;Oryzabase Gene Name Synonym(s)=GTPase-activating protein 1;Note=GTPase-activating protein%2C Regulation of vesicle trafficking from trans-Golgi network to plasma membrane or central vacuole;Transcript_evidence=AK068743;ORF_evidence=Q5SMT0;InterPro=Domain of unknown function DUF3548 (IPR021935),Rab-GTPase-TBC domain (IPR000195);NIAS_FLcDNA=J013162A17;Manual Curation=May 9%2C 2017;Literature_PMID=23199687,16230331;Oryzabase=11433;Expression=AK068743;TENOR=Os02t0709800-01;KEGG=Os02t0709800-01;Subcellular location=Golgi apparatus (GO:0005794), prevacuolar compartment (PVC) (GO:0005770)
Chr02	irgsp1_rep	five_prime_UTR	29380913	29381086	.	-	.	Parent=Os02t0709800-01
Chr02	irgsp1_rep	CDS	29380784	29380912	.	-	0	Parent=Os02t0709800-01
Chr02	irgsp1_rep	CDS	29380224	29380382	.	-	0	Parent=Os02t0709800-01
Chr02	irgsp1_rep	CDS	29379736	29379802	.	-	0	Parent=Os02t0709800-01
Chr02	irgsp1_rep	CDS	29379530	29379637	.	-	2	Parent=Os02t0709800-01
Chr02	irgsp1_rep	CDS	29379232	29379316	.	-	2	Parent=Os02t0709800-01
Chr02	irgsp1_rep	CDS	29378756	29378810	.	-	1	Parent=Os02t0709800-01
Chr02	irgsp1_rep	CDS	29378114	29378515	.	-	0	Parent=Os02t0709800-01
Chr02	irgsp1_rep	CDS	29377498	29377554	.	-	0	Parent=Os02t0709800-01
Chr02	irgsp1_rep	CDS	29376536	29376634	.	-	0	Parent=Os02t0709800-01
Chr02	irgsp1_rep	CDS	29376347	29376457	.	-	0	Parent=Os02t0709800-01
Chr02	irgsp1_rep	CDS	29375883	29375954	.	-	0	Parent=Os02t0709800-01
Chr02	irgsp1_rep	CDS	29375631	29375747	.	-	0	Parent=Os02t0709800-01
Chr02	irgsp1_rep	CDS	29375147	29375296	.	-	0	Parent=Os02t0709800-01
Chr02	irgsp1_rep	CDS	29374555	29374655	.	-	0	Parent=Os02t0709800-01
Chr02	irgsp1_rep	CDS	29373436	29373763	.	-	1	Parent=Os02t0709800-01
Chr02	irgsp1_rep	three_prime_UTR	29373020	29373435	.	-	.	Parent=Os02t0709800-01
Chr02	irgsp1_rep	mRNA	29383586	29388526	.	-	.	ID=Os02t0709900-01;Name=Os02t0709900-01;Locus_id=Os02g0709900;Oryzabase Gene Symbol Synonym(s)=OsNMCP1a;Oryzabase Gene Name Synonym(s)=nuclear matrix protein NMCP1a;Note=Conserved hypothetical protein.;Transcript_evidence=AK109259 (DDBJ%2C Best hit);ORF_evidence=A3AAL6 (UniProt);NIAS_FLcDNA=002-185-A11;Oryzabase=16048;TENOR=Os02t0709900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	29388398	29388526	.	-	.	Parent=Os02t0709900-01
Chr02	irgsp1_rep	five_prime_UTR	29388042	29388072	.	-	.	Parent=Os02t0709900-01
Chr02	irgsp1_rep	CDS	29387869	29388041	.	-	0	Parent=Os02t0709900-01
Chr02	irgsp1_rep	CDS	29383586	29383819	.	-	1	Parent=Os02t0709900-01
Chr02	irgsp1_rep	mRNA	29385880	29386574	.	-	.	ID=Os02t0710102-01;Name=Os02t0710102-01;Locus_id=Os02g0710102;Note=Hypothetical conserved gene.;Transcript_evidence=AK064051 (DDBJ%2C Best hit);ORF_evidence=A3AAL6 (UniProt);NIAS_FLcDNA=001-125-E09;TENOR=Os02t0710102-01
Chr02	irgsp1_rep	five_prime_UTR	29386574	29386574	.	-	.	Parent=Os02t0710102-01
Chr02	irgsp1_rep	CDS	29386371	29386573	.	-	0	Parent=Os02t0710102-01
Chr02	irgsp1_rep	CDS	29386014	29386284	.	-	1	Parent=Os02t0710102-01
Chr02	irgsp1_rep	CDS	29385880	29385910	.	-	0	Parent=Os02t0710102-01
Chr02	irgsp1_rep	mRNA	29421243	29422609	.	-	.	ID=Os02t0710201-00;Name=Os02t0710201-00;Locus_id=Os02g0710201;Note=Hypothetical protein.;Transcript_evidence=AK372884 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0710201-00
Chr02	irgsp1_rep	five_prime_UTR	29421670	29422609	.	-	.	Parent=Os02t0710201-00
Chr02	irgsp1_rep	CDS	29421256	29421669	.	-	0	Parent=Os02t0710201-00
Chr02	irgsp1_rep	three_prime_UTR	29421243	29421255	.	-	.	Parent=Os02t0710201-00
Chr02	irgsp1_rep	mRNA	29421401	29422989	.	+	.	ID=Os02t0710300-01;Name=Os02t0710300-01;Locus_id=Os02g0710300;RAP-DB Gene Symbol Synonym(s)=OsbHLH126%2C OsRSL2;RAP-DB Gene Name Synonym(s)=basic helix-loop-helix protein 126;Oryzabase Gene Symbol Synonym(s)=OsbHLH126%2C bHLH126%2C OsRSL2%2C RSL2;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 126%2C ROOT HAIR DEFECTIVE-SIX LIKE 2;Note=ROOT HAIR DEFECTIVE-SIX LIKE (RSL) class I basic helix-loop-helix protein%2C bHLH transcription factor%2C Regulation of root hair development;Transcript_evidence=AK109662;ORF_evidence=Q0DY80;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);NIAS_FLcDNA=002-143-H06;Manual Curation=October 4%2C 2016;Literature_PMID=27494519,27716929;Oryzabase=15404;Expression=AK109662;TENOR=Os02t0710300-01;KEGG=Os02t0710300-01
Chr02	irgsp1_rep	five_prime_UTR	29421401	29421547	.	+	.	Parent=Os02t0710300-01
Chr02	irgsp1_rep	CDS	29421548	29422192	.	+	0	Parent=Os02t0710300-01
Chr02	irgsp1_rep	CDS	29422290	29422421	.	+	0	Parent=Os02t0710300-01
Chr02	irgsp1_rep	CDS	29422517	29422642	.	+	0	Parent=Os02t0710300-01
Chr02	irgsp1_rep	three_prime_UTR	29422643	29422989	.	+	.	Parent=Os02t0710300-01
Chr02	irgsp1_rep	mRNA	29429764	29432336	.	+	.	ID=Os02t0710500-01;Name=Os02t0710500-01;Locus_id=Os02g0710500;Oryzabase Gene Name Synonym(s)=receptor protein kinase;Note=Similar to Receptor protein kinase.;Transcript_evidence=AK103360 (DDBJ%2C Best hit);ORF_evidence=NP_001149383.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J033126M21;Oryzabase=21739;Expression=AK103360;TENOR=Os02t0710500-01;KEGG=Os02t0710500-01
Chr02	irgsp1_rep	five_prime_UTR	29429764	29429936	.	+	.	Parent=Os02t0710500-01
Chr02	irgsp1_rep	CDS	29429937	29430033	.	+	0	Parent=Os02t0710500-01
Chr02	irgsp1_rep	CDS	29430156	29430263	.	+	2	Parent=Os02t0710500-01
Chr02	irgsp1_rep	CDS	29430362	29430507	.	+	2	Parent=Os02t0710500-01
Chr02	irgsp1_rep	CDS	29430616	29430826	.	+	0	Parent=Os02t0710500-01
Chr02	irgsp1_rep	CDS	29431259	29431496	.	+	2	Parent=Os02t0710500-01
Chr02	irgsp1_rep	CDS	29431605	29431755	.	+	1	Parent=Os02t0710500-01
Chr02	irgsp1_rep	CDS	29431860	29432189	.	+	0	Parent=Os02t0710500-01
Chr02	irgsp1_rep	three_prime_UTR	29432190	29432336	.	+	.	Parent=Os02t0710500-01
Chr02	irgsp1_rep	mRNA	29431110	29432255	.	-	.	ID=Os02t0710550-00;Name=Os02t0710550-00;Locus_id=Os02g0710550;Note=Hypothetical gene.;Transcript_evidence=CT833568 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os02t0710550-00;KEGG=Os02t0710550-00
Chr02	irgsp1_rep	CDS	29431842	29432255	.	-	0	Parent=Os02t0710550-00
Chr02	irgsp1_rep	three_prime_UTR	29431832	29431841	.	-	.	Parent=Os02t0710550-00
Chr02	irgsp1_rep	three_prime_UTR	29431110	29431743	.	-	.	Parent=Os02t0710550-00
Chr02	irgsp1_rep	mRNA	29438189	29440763	.	+	.	ID=Os02t0710700-00;Name=Os02t0710700-00;Locus_id=Os02g0710700;Note=Hypothetical conserved gene.;Transcript_evidence=CT835423 (DDBJ%2C Best hit);ORF_evidence=NP_001047896.1 (RefSeq);TENOR=Os02t0710700-00;KEGG=Os02t0710700-00
Chr02	irgsp1_rep	five_prime_UTR	29438189	29438331	.	+	.	Parent=Os02t0710700-00
Chr02	irgsp1_rep	CDS	29438332	29439006	.	+	0	Parent=Os02t0710700-00
Chr02	irgsp1_rep	CDS	29440278	29440304	.	+	0	Parent=Os02t0710700-00
Chr02	irgsp1_rep	CDS	29440317	29440658	.	+	0	Parent=Os02t0710700-00
Chr02	irgsp1_rep	three_prime_UTR	29440659	29440763	.	+	.	Parent=Os02t0710700-00
Chr02	irgsp1_rep	mRNA	29447864	29451429	.	+	.	ID=Os02t0710800-01;Name=Os02t0710800-01;Locus_id=Os02g0710800;Oryzabase Gene Symbol Synonym(s)=RecG;Note=Similar to ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid binding.;Transcript_evidence=AK058346 (DDBJ%2C Best hit);ORF_evidence=NP_178253.3 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001);NIAS_FLcDNA=001-014-E02;Oryzabase=21308;TENOR=Os02t0710800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	29447864	29447865	.	+	.	Parent=Os02t0710800-01
Chr02	irgsp1_rep	CDS	29447866	29447925	.	+	0	Parent=Os02t0710800-01
Chr02	irgsp1_rep	CDS	29448133	29448285	.	+	0	Parent=Os02t0710800-01
Chr02	irgsp1_rep	CDS	29448364	29448507	.	+	0	Parent=Os02t0710800-01
Chr02	irgsp1_rep	CDS	29449447	29449605	.	+	0	Parent=Os02t0710800-01
Chr02	irgsp1_rep	CDS	29450193	29450276	.	+	0	Parent=Os02t0710800-01
Chr02	irgsp1_rep	CDS	29450411	29450983	.	+	0	Parent=Os02t0710800-01
Chr02	irgsp1_rep	CDS	29451100	29451192	.	+	0	Parent=Os02t0710800-01
Chr02	irgsp1_rep	three_prime_UTR	29451193	29451429	.	+	.	Parent=Os02t0710800-01
Chr02	irgsp1_rep	mRNA	29451939	29457739	.	+	.	ID=Os02t0710900-01;Name=Os02t0710900-01;Locus_id=Os02g0710900;Note=Heat shock protein Hsp70 family protein.;Transcript_evidence=AK100997 (DDBJ%2C Best hit);ORF_evidence=B6SP66 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Heat shock protein Hsp70 (IPR001023),Heat shock protein 70 (IPR013126),Heat shock protein 70%2C conserved site (IPR018181);NIAS_FLcDNA=J023146N12;Expression=AK100997;TENOR=Os02t0710900-01;KEGG=Os02t0710900-01
Chr02	irgsp1_rep	five_prime_UTR	29451939	29452081	.	+	.	Parent=Os02t0710900-01
Chr02	irgsp1_rep	CDS	29452082	29452858	.	+	0	Parent=Os02t0710900-01
Chr02	irgsp1_rep	CDS	29453081	29453313	.	+	0	Parent=Os02t0710900-01
Chr02	irgsp1_rep	CDS	29454204	29454363	.	+	1	Parent=Os02t0710900-01
Chr02	irgsp1_rep	CDS	29454656	29454901	.	+	0	Parent=Os02t0710900-01
Chr02	irgsp1_rep	CDS	29454999	29455135	.	+	0	Parent=Os02t0710900-01
Chr02	irgsp1_rep	CDS	29455381	29455714	.	+	1	Parent=Os02t0710900-01
Chr02	irgsp1_rep	CDS	29455790	29455951	.	+	0	Parent=Os02t0710900-01
Chr02	irgsp1_rep	CDS	29456224	29456298	.	+	0	Parent=Os02t0710900-01
Chr02	irgsp1_rep	CDS	29456373	29456473	.	+	0	Parent=Os02t0710900-01
Chr02	irgsp1_rep	CDS	29456549	29456618	.	+	1	Parent=Os02t0710900-01
Chr02	irgsp1_rep	CDS	29456717	29456773	.	+	0	Parent=Os02t0710900-01
Chr02	irgsp1_rep	CDS	29456864	29456925	.	+	0	Parent=Os02t0710900-01
Chr02	irgsp1_rep	CDS	29457012	29457084	.	+	1	Parent=Os02t0710900-01
Chr02	irgsp1_rep	CDS	29457170	29457391	.	+	0	Parent=Os02t0710900-01
Chr02	irgsp1_rep	three_prime_UTR	29457392	29457739	.	+	.	Parent=Os02t0710900-01
Chr02	irgsp1_rep	mRNA	29452070	29457464	.	-	.	ID=Os02t0710950-00;Name=Os02t0710950-00;Locus_id=Os02g0710950;Note=Glutamate dehydrogenase%2C NAD-specific domain containing protein.;Transcript_evidence=tplb0036m15 (Wheat FLcDNA);ORF_evidence=longestORF;InterPro=Glutamate dehydrogenase%2C NAD-specific (IPR019651);TENOR=Os02t0710950-00
Chr02	irgsp1_rep	five_prime_UTR	29457192	29457464	.	-	.	Parent=Os02t0710950-00
Chr02	irgsp1_rep	five_prime_UTR	29457015	29457107	.	-	.	Parent=Os02t0710950-00
Chr02	irgsp1_rep	five_prime_UTR	29456862	29456930	.	-	.	Parent=Os02t0710950-00
Chr02	irgsp1_rep	five_prime_UTR	29456700	29456771	.	-	.	Parent=Os02t0710950-00
Chr02	irgsp1_rep	five_prime_UTR	29456546	29456600	.	-	.	Parent=Os02t0710950-00
Chr02	irgsp1_rep	five_prime_UTR	29456377	29456470	.	-	.	Parent=Os02t0710950-00
Chr02	irgsp1_rep	five_prime_UTR	29456222	29456300	.	-	.	Parent=Os02t0710950-00
Chr02	irgsp1_rep	five_prime_UTR	29455794	29455955	.	-	.	Parent=Os02t0710950-00
Chr02	irgsp1_rep	five_prime_UTR	29455361	29455718	.	-	.	Parent=Os02t0710950-00
Chr02	irgsp1_rep	five_prime_UTR	29454994	29455115	.	-	.	Parent=Os02t0710950-00
Chr02	irgsp1_rep	five_prime_UTR	29454653	29454896	.	-	.	Parent=Os02t0710950-00
Chr02	irgsp1_rep	five_prime_UTR	29454210	29454360	.	-	.	Parent=Os02t0710950-00
Chr02	irgsp1_rep	five_prime_UTR	29453078	29453320	.	-	.	Parent=Os02t0710950-00
Chr02	irgsp1_rep	five_prime_UTR	29452751	29452855	.	-	.	Parent=Os02t0710950-00
Chr02	irgsp1_rep	CDS	29452070	29452750	.	-	0	Parent=Os02t0710950-00
Chr02	irgsp1_rep	mRNA	29458151	29461117	.	-	.	ID=Os02t0711000-01;Name=Os02t0711000-01;Locus_id=Os02g0711000;Note=Conserved hypothetical protein.;Transcript_evidence=AK067559 (DDBJ%2C Best hit);ORF_evidence=B9F2B9 (UniProt);NIAS_FLcDNA=J013113L02;TENOR=Os02t0711000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	29460688	29461117	.	-	.	Parent=Os02t0711000-01
Chr02	irgsp1_rep	CDS	29460361	29460687	.	-	0	Parent=Os02t0711000-01
Chr02	irgsp1_rep	three_prime_UTR	29460060	29460360	.	-	.	Parent=Os02t0711000-01
Chr02	irgsp1_rep	three_prime_UTR	29459615	29459904	.	-	.	Parent=Os02t0711000-01
Chr02	irgsp1_rep	three_prime_UTR	29459390	29459533	.	-	.	Parent=Os02t0711000-01
Chr02	irgsp1_rep	three_prime_UTR	29459184	29459311	.	-	.	Parent=Os02t0711000-01
Chr02	irgsp1_rep	three_prime_UTR	29458997	29459094	.	-	.	Parent=Os02t0711000-01
Chr02	irgsp1_rep	three_prime_UTR	29458799	29458890	.	-	.	Parent=Os02t0711000-01
Chr02	irgsp1_rep	three_prime_UTR	29458537	29458673	.	-	.	Parent=Os02t0711000-01
Chr02	irgsp1_rep	three_prime_UTR	29458151	29458456	.	-	.	Parent=Os02t0711000-01
Chr02	irgsp1_rep	mRNA	29463847	29465660	.	-	.	ID=Os02t0711100-01;Name=Os02t0711100-01;Locus_id=Os02g0711100;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK070234 (DDBJ%2C Best hit);ORF_evidence=A2X8U9 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J023044K18;Expression=AK070234;TENOR=Os02t0711100-01;KEGG=Os02t0711100-01
Chr02	irgsp1_rep	five_prime_UTR	29465562	29465660	.	-	.	Parent=Os02t0711100-01
Chr02	irgsp1_rep	CDS	29464092	29465561	.	-	0	Parent=Os02t0711100-01
Chr02	irgsp1_rep	three_prime_UTR	29463847	29464091	.	-	.	Parent=Os02t0711100-01
Chr02	irgsp1_rep	mRNA	29465660	29468052	.	+	.	ID=Os02t0711200-01;Name=Os02t0711200-01;Locus_id=Os02g0711200;Oryzabase Gene Symbol Synonym(s)=Get3;Oryzabase Gene Name Synonym(s)=Get3 orthologue%2C Guided Entry of Tail-anchored protein 3 ortholog;Note=Anion-transporting ATPase family protein.;Transcript_evidence=AK106470 (DDBJ%2C Best hit);ORF_evidence=A3AAM6 (UniProt);GO=Biological Process: detoxification of arsenic-containing substance (GO:0071722),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887);InterPro=Arsenical pump ATPase%2C ArsA/Get3 (IPR016300);NIAS_FLcDNA=002-103-H12;Oryzabase=22426;Expression=AK106470;TENOR=Os02t0711200-01;KEGG=Os02t0711200-01 (EC:3.6.3.16)
Chr02	irgsp1_rep	five_prime_UTR	29465660	29465791	.	+	.	Parent=Os02t0711200-01
Chr02	irgsp1_rep	CDS	29465792	29465974	.	+	0	Parent=Os02t0711200-01
Chr02	irgsp1_rep	CDS	29466264	29466407	.	+	0	Parent=Os02t0711200-01
Chr02	irgsp1_rep	CDS	29466521	29466595	.	+	0	Parent=Os02t0711200-01
Chr02	irgsp1_rep	CDS	29466674	29466861	.	+	0	Parent=Os02t0711200-01
Chr02	irgsp1_rep	CDS	29466944	29466989	.	+	1	Parent=Os02t0711200-01
Chr02	irgsp1_rep	three_prime_UTR	29466990	29467113	.	+	.	Parent=Os02t0711200-01
Chr02	irgsp1_rep	three_prime_UTR	29467205	29467606	.	+	.	Parent=Os02t0711200-01
Chr02	irgsp1_rep	three_prime_UTR	29467717	29468052	.	+	.	Parent=Os02t0711200-01
Chr02	irgsp1_rep	mRNA	29468413	29469191	.	+	.	ID=Os02t0711300-01;Name=Os02t0711300-01;Locus_id=Os02g0711300;Note=Heat shock protein Hsp20 domain containing protein.;Transcript_evidence=AK107963 (DDBJ%2C Best hit);ORF_evidence=C5H4M8 (UniProt);InterPro=Heat shock protein Hsp20 (IPR002068),HSP20-like chaperone (IPR008978);NIAS_FLcDNA=002-135-C11;Expression=AK107963;TENOR=Os02t0711300-01;KEGG=Os02t0711300-01
Chr02	irgsp1_rep	five_prime_UTR	29468413	29468466	.	+	.	Parent=Os02t0711300-01
Chr02	irgsp1_rep	CDS	29468467	29468784	.	+	0	Parent=Os02t0711300-01
Chr02	irgsp1_rep	CDS	29468821	29468961	.	+	0	Parent=Os02t0711300-01
Chr02	irgsp1_rep	three_prime_UTR	29468962	29469191	.	+	.	Parent=Os02t0711300-01
Chr02	irgsp1_rep	mRNA	29471779	29472570	.	-	.	ID=Os02t0711400-01;Name=Os02t0711400-01;Locus_id=Os02g0711400;Note=Conserved hypothetical protein.;Transcript_evidence=AK105197 (DDBJ%2C Best hit);ORF_evidence=A2X8V2 (UniProt);NIAS_FLcDNA=001-107-G03;Expression=AK105197;TENOR=Os02t0711400-01;KEGG=Os02t0711400-01
Chr02	irgsp1_rep	five_prime_UTR	29472458	29472570	.	-	.	Parent=Os02t0711400-01
Chr02	irgsp1_rep	CDS	29472041	29472457	.	-	0	Parent=Os02t0711400-01
Chr02	irgsp1_rep	three_prime_UTR	29471779	29472040	.	-	.	Parent=Os02t0711400-01
Chr02	irgsp1_rep	mRNA	29481089	29482604	.	-	.	ID=Os02t0711900-00;Name=Os02t0711900-00;Locus_id=Os02g0711900;Note=Similar to groundhog protein 7.;Transcript_evidence=FP093925 (DDBJ);ORF_evidence=NP_001147707.1 (RefSeq);TENOR=Os02t0711900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	29482601	29482604	.	-	.	Parent=Os02t0711900-00
Chr02	irgsp1_rep	CDS	29482546	29482600	.	-	0	Parent=Os02t0711900-00
Chr02	irgsp1_rep	CDS	29481470	29482160	.	-	2	Parent=Os02t0711900-00
Chr02	irgsp1_rep	CDS	29481262	29481271	.	-	1	Parent=Os02t0711900-00
Chr02	irgsp1_rep	three_prime_UTR	29481089	29481261	.	-	.	Parent=Os02t0711900-00
Chr02	irgsp1_rep	mRNA	29483433	29495702	.	-	.	ID=Os02t0712000-01;Name=Os02t0712000-01;Locus_id=Os02g0712000;Oryzabase Gene Symbol Synonym(s)=OsDegp2%2C DEGP2%2C OsDeg7;Oryzabase Gene Name Synonym(s)=Deg protease 2%2C DEG PROTEASE 2;Note=Similar to DegP7 (DegP protease 7)%3B catalytic/ protein binding / serine-type endopeptidase/ serine-type peptidase.;Transcript_evidence=AK065045 (DDBJ%2C Best hit);ORF_evidence=NP_566204.2 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein binding (GO:0005515);InterPro=PDZ/DHR/GLGF (IPR001478),Peptidase cysteine/serine%2C trypsin-like (IPR009003);NIAS_FLcDNA=J013001I02;Oryzabase=20078;TENOR=Os02t0712000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	29495616	29495702	.	-	.	Parent=Os02t0712000-01
Chr02	irgsp1_rep	CDS	29495227	29495615	.	-	0	Parent=Os02t0712000-01
Chr02	irgsp1_rep	CDS	29495049	29495119	.	-	1	Parent=Os02t0712000-01
Chr02	irgsp1_rep	CDS	29494801	29494901	.	-	2	Parent=Os02t0712000-01
Chr02	irgsp1_rep	CDS	29493699	29493757	.	-	0	Parent=Os02t0712000-01
Chr02	irgsp1_rep	CDS	29493188	29493224	.	-	1	Parent=Os02t0712000-01
Chr02	irgsp1_rep	CDS	29492357	29492482	.	-	0	Parent=Os02t0712000-01
Chr02	irgsp1_rep	CDS	29491424	29491513	.	-	0	Parent=Os02t0712000-01
Chr02	irgsp1_rep	CDS	29490949	29491014	.	-	0	Parent=Os02t0712000-01
Chr02	irgsp1_rep	CDS	29490560	29490616	.	-	0	Parent=Os02t0712000-01
Chr02	irgsp1_rep	CDS	29490381	29490446	.	-	0	Parent=Os02t0712000-01
Chr02	irgsp1_rep	CDS	29489798	29489905	.	-	0	Parent=Os02t0712000-01
Chr02	irgsp1_rep	CDS	29489554	29489634	.	-	0	Parent=Os02t0712000-01
Chr02	irgsp1_rep	CDS	29489024	29489073	.	-	0	Parent=Os02t0712000-01
Chr02	irgsp1_rep	CDS	29488442	29488607	.	-	1	Parent=Os02t0712000-01
Chr02	irgsp1_rep	CDS	29487820	29488320	.	-	0	Parent=Os02t0712000-01
Chr02	irgsp1_rep	CDS	29486876	29487058	.	-	0	Parent=Os02t0712000-01
Chr02	irgsp1_rep	CDS	29486686	29486788	.	-	0	Parent=Os02t0712000-01
Chr02	irgsp1_rep	CDS	29486393	29486563	.	-	2	Parent=Os02t0712000-01
Chr02	irgsp1_rep	CDS	29486229	29486308	.	-	2	Parent=Os02t0712000-01
Chr02	irgsp1_rep	CDS	29485634	29485861	.	-	0	Parent=Os02t0712000-01
Chr02	irgsp1_rep	CDS	29485099	29485314	.	-	0	Parent=Os02t0712000-01
Chr02	irgsp1_rep	CDS	29484848	29485005	.	-	0	Parent=Os02t0712000-01
Chr02	irgsp1_rep	CDS	29484037	29484148	.	-	1	Parent=Os02t0712000-01
Chr02	irgsp1_rep	CDS	29483742	29483918	.	-	0	Parent=Os02t0712000-01
Chr02	irgsp1_rep	three_prime_UTR	29483433	29483741	.	-	.	Parent=Os02t0712000-01
Chr02	irgsp1_rep	mRNA	29501312	29502455	.	-	.	ID=Os02t0712400-01;Name=Os02t0712400-01;Locus_id=Os02g0712400;Note=Similar to H0721B11.1 protein.;Transcript_evidence=AK073713 (DDBJ%2C Best hit);ORF_evidence=Q25A30 (UniProt);NIAS_FLcDNA=J033063L11;TENOR=Os02t0712400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	29502454	29502455	.	-	.	Parent=Os02t0712400-01
Chr02	irgsp1_rep	CDS	29501569	29502453	.	-	0	Parent=Os02t0712400-01
Chr02	irgsp1_rep	three_prime_UTR	29501312	29501568	.	-	.	Parent=Os02t0712400-01
Chr02	irgsp1_rep	mRNA	29502677	29506587	.	-	.	ID=Os02t0712500-01;Name=Os02t0712500-01;Locus_id=Os02g0712500;Note=Protein of unknown function DUF23 family protein.;Transcript_evidence=AK100094 (DDBJ%2C Best hit);ORF_evidence=B8AHP9 (UniProt);InterPro=Domain of unknown function DUF23 (IPR008166);NIAS_FLcDNA=J023003P08;Expression=AK100094;TENOR=Os02t0712500-01;KEGG=Os02t0712500-01
Chr02	irgsp1_rep	five_prime_UTR	29506243	29506587	.	-	.	Parent=Os02t0712500-01
Chr02	irgsp1_rep	CDS	29505032	29506242	.	-	0	Parent=Os02t0712500-01
Chr02	irgsp1_rep	CDS	29503022	29503367	.	-	1	Parent=Os02t0712500-01
Chr02	irgsp1_rep	three_prime_UTR	29502677	29503021	.	-	.	Parent=Os02t0712500-01
Chr02	irgsp1_rep	mRNA	29503022	29506228	.	+	.	ID=Os02t0712512-00;Name=Os02t0712512-00;Locus_id=Os02g0712512;Note=Hypothetical protein.;Transcript_evidence=tplb0026g02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0712512-00
Chr02	irgsp1_rep	five_prime_UTR	29503022	29503027	.	+	.	Parent=Os02t0712512-00
Chr02	irgsp1_rep	CDS	29503028	29503258	.	+	0	Parent=Os02t0712512-00
Chr02	irgsp1_rep	three_prime_UTR	29503259	29503365	.	+	.	Parent=Os02t0712512-00
Chr02	irgsp1_rep	three_prime_UTR	29505030	29506228	.	+	.	Parent=Os02t0712512-00
Chr02	irgsp1_rep	mRNA	29509237	29509799	.	+	.	ID=Os02t0712550-01;Name=Os02t0712550-01;Locus_id=Os02g0712550;Note=Conserved hypothetical protein.;Transcript_evidence=AK241276 (DDBJ%2C Best hit);ORF_evidence=NP_001173135.1 (RefSeq);NIAS_FLcDNA=J065134N11;TENOR=Os02t0712550-01;KEGG=Os02t0712550-01
Chr02	irgsp1_rep	five_prime_UTR	29509237	29509396	.	+	.	Parent=Os02t0712550-01
Chr02	irgsp1_rep	CDS	29509397	29509648	.	+	0	Parent=Os02t0712550-01
Chr02	irgsp1_rep	three_prime_UTR	29509649	29509799	.	+	.	Parent=Os02t0712550-01
Chr02	irgsp1_rep	mRNA	29515727	29518756	.	-	.	ID=Os02t0712600-01;Name=Os02t0712600-01;Locus_id=Os02g0712600;Note=Concanavalin A-like lectin/glucanase domain containing protein.;Transcript_evidence=AK107391 (DDBJ%2C Best hit);ORF_evidence=A2X8V6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Legume lectin%2C beta chain%2C Mn/Ca-binding site (IPR019825);NIAS_FLcDNA=002-127-C12;Expression=AK107391;TENOR=Os02t0712600-01;KEGG=Os02t0712600-01
Chr02	irgsp1_rep	five_prime_UTR	29518729	29518756	.	-	.	Parent=Os02t0712600-01
Chr02	irgsp1_rep	CDS	29517378	29518728	.	-	0	Parent=Os02t0712600-01
Chr02	irgsp1_rep	CDS	29515969	29516822	.	-	2	Parent=Os02t0712600-01
Chr02	irgsp1_rep	three_prime_UTR	29515727	29515968	.	-	.	Parent=Os02t0712600-01
Chr02	irgsp1_rep	mRNA	29516150	29517618	.	+	.	ID=Os02t0712650-00;Name=Os02t0712650-00;Locus_id=Os02g0712650;Note=Hypothetical protein.;Transcript_evidence=EU969960 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0712650-00
Chr02	irgsp1_rep	five_prime_UTR	29516150	29516151	.	+	.	Parent=Os02t0712650-00
Chr02	irgsp1_rep	CDS	29516152	29516793	.	+	0	Parent=Os02t0712650-00
Chr02	irgsp1_rep	three_prime_UTR	29516794	29516839	.	+	.	Parent=Os02t0712650-00
Chr02	irgsp1_rep	three_prime_UTR	29517394	29517618	.	+	.	Parent=Os02t0712650-00
Chr02	irgsp1_rep	mRNA	29519619	29523253	.	-	.	ID=Os02t0712700-01;Name=Os02t0712700-01;Locus_id=Os02g0712700;Note=Concanavalin A-like lectin/glucanase domain containing protein.;Transcript_evidence=AK243568 (DDBJ%2C Best hit);ORF_evidence=NP_001047909.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J100081N10;TENOR=Os02t0712700-01;KEGG=Os02t0712700-01
Chr02	irgsp1_rep	five_prime_UTR	29523182	29523253	.	-	.	Parent=Os02t0712700-01
Chr02	irgsp1_rep	CDS	29521813	29523181	.	-	0	Parent=Os02t0712700-01
Chr02	irgsp1_rep	CDS	29519916	29520790	.	-	2	Parent=Os02t0712700-01
Chr02	irgsp1_rep	three_prime_UTR	29519619	29519915	.	-	.	Parent=Os02t0712700-01
Chr02	irgsp1_rep	mRNA	29523354	29527951	.	-	.	ID=Os02t0712800-01;Name=Os02t0712800-01;Locus_id=Os02g0712800;Note=Conserved hypothetical protein.;Transcript_evidence=AK121643 (DDBJ%2C Best hit);ORF_evidence=B8AHQ0 (UniProt);NIAS_FLcDNA=J033056A08;Expression=AK121643;TENOR=Os02t0712800-01;KEGG=Os02t0712800-01
Chr02	irgsp1_rep	five_prime_UTR	29526257	29527951	.	-	.	Parent=Os02t0712800-01
Chr02	irgsp1_rep	CDS	29526035	29526256	.	-	0	Parent=Os02t0712800-01
Chr02	irgsp1_rep	CDS	29525340	29525475	.	-	0	Parent=Os02t0712800-01
Chr02	irgsp1_rep	CDS	29524489	29524529	.	-	2	Parent=Os02t0712800-01
Chr02	irgsp1_rep	three_prime_UTR	29524365	29524488	.	-	.	Parent=Os02t0712800-01
Chr02	irgsp1_rep	three_prime_UTR	29523810	29524089	.	-	.	Parent=Os02t0712800-01
Chr02	irgsp1_rep	three_prime_UTR	29523354	29523555	.	-	.	Parent=Os02t0712800-01
Chr02	irgsp1_rep	mRNA	29548369	29548824	.	+	.	ID=Os02t0713250-00;Name=Os02t0713250-00;Locus_id=Os02g0713250;Note=Hypothetical conserved gene.;Transcript_evidence=EU968736 (DDBJ);ORF_evidence=Q6ZFU7 (UniProt);TENOR=Os02t0713250-00;KEGG=Os02t0713250-00
Chr02	irgsp1_rep	five_prime_UTR	29548369	29548371	.	+	.	Parent=Os02t0713250-00
Chr02	irgsp1_rep	CDS	29548372	29548824	.	+	0	Parent=Os02t0713250-00
Chr02	irgsp1_rep	mRNA	29550953	29554247	.	+	.	ID=Os02t0713400-01;Name=Os02t0713400-01;Locus_id=Os02g0713400;CGSNL Gene Symbol=NTRB;CGSNL Gene Name=NADPH-DEPENDENT THIOREDOXIN REDUCTASE B;Oryzabase Gene Symbol Synonym(s)=OsNTRB%2C NtrB;Oryzabase Gene Name Synonym(s)=NADPH-dependent thioredoxin reductase B%2C NADP-thioredoxin reductase B%2C NADPH-dependent Trx reductase B;Note=Similar to Thioredoxin reductase 1 (EC 1.8.1.9) (NADPH-dependent thioredoxin reductase 1) (NTR 1).;Transcript_evidence=AK071251 (DDBJ%2C Best hit),AK104317 (DDBJ%2C Best hit);ORF_evidence=B8AHL2 (UniProt);GO=Biological Process: removal of superoxide radicals (GO:0019430),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: cytoplasm (GO:0005737),Molecular Function: thioredoxin-disulfide reductase activity (GO:0004791),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Pyridine nucleotide-disulphide oxidoreductase%2C class-II (IPR000103),Thioredoxin reductase (IPR005982),Pyridine nucleotide-disulphide oxidoreductase%2C class-II%2C active site (IPR008255),FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR013027),Pyridine nucleotide-disulphide oxidoreductase%2C FAD/NAD(P)-binding domain (IPR023753);NIAS_FLcDNA=J023087H21,001-024-C03;Oryzabase=14372;TENOR=Os02t0713400-01
Chr02	irgsp1_rep	five_prime_UTR	29550953	29551069	.	+	.	Parent=Os02t0713400-01
Chr02	irgsp1_rep	CDS	29551070	29551994	.	+	0	Parent=Os02t0713400-01
Chr02	irgsp1_rep	CDS	29553794	29553864	.	+	2	Parent=Os02t0713400-01
Chr02	irgsp1_rep	three_prime_UTR	29553865	29554247	.	+	.	Parent=Os02t0713400-01
Chr02	irgsp1_rep	mRNA	29555642	29557498	.	-	.	ID=Os02t0713500-00;Name=Os02t0713500-00;Locus_id=Os02g0713500;Oryzabase Gene Symbol Synonym(s)=OsFbox108%2C Os_F0236;Oryzabase Gene Name Synonym(s)=F-box protein 108;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK335022 (DDBJ);ORF_evidence=B9F2C5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=16899;TENOR=Os02t0713500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	29557488	29557498	.	-	.	Parent=Os02t0713500-00
Chr02	irgsp1_rep	CDS	29556560	29557487	.	-	0	Parent=Os02t0713500-00
Chr02	irgsp1_rep	CDS	29556313	29556446	.	-	2	Parent=Os02t0713500-00
Chr02	irgsp1_rep	CDS	29555642	29556043	.	-	0	Parent=Os02t0713500-00
Chr02	irgsp1_rep	mRNA	29571841	29573542	.	-	.	ID=Os02t0713700-01;Name=Os02t0713700-01;Locus_id=Os02g0713700;Note=Protein of unknown function DUF296 domain containing protein.;Transcript_evidence=AK241201 (DDBJ%2C Best hit);ORF_evidence=NP_195265.2 (RefSeq);InterPro=Domain of unknown function DUF296 (IPR005175),Predicted AT-hook DNA-binding (IPR014476);NIAS_FLcDNA=J065121M03;TENOR=Os02t0713700-01;KEGG=Os02t0713700-01
Chr02	irgsp1_rep	five_prime_UTR	29573370	29573542	.	-	.	Parent=Os02t0713700-01
Chr02	irgsp1_rep	CDS	29572359	29573369	.	-	0	Parent=Os02t0713700-01
Chr02	irgsp1_rep	three_prime_UTR	29571841	29572358	.	-	.	Parent=Os02t0713700-01
Chr02	irgsp1_rep	mRNA	29587065	29588178	.	+	.	ID=Os02t0713801-00;Name=Os02t0713801-00;Locus_id=Os02g0713801;Note=Hypothetical gene.;Transcript_evidence=BT019297 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0713801-00
Chr02	irgsp1_rep	five_prime_UTR	29587065	29587586	.	+	.	Parent=Os02t0713801-00
Chr02	irgsp1_rep	five_prime_UTR	29587818	29587898	.	+	.	Parent=Os02t0713801-00
Chr02	irgsp1_rep	CDS	29587899	29588178	.	+	0	Parent=Os02t0713801-00
Chr02	irgsp1_rep	mRNA	29587196	29591875	.	-	.	ID=Os02t0713900-01;Name=Os02t0713900-01;Locus_id=Os02g0713900;Oryzabase Gene Symbol Synonym(s)=HMGR I%2C Hmg1%2C HMGR1%2C HMGR 1%2C OsHMGR1;Oryzabase Gene Name Synonym(s)=3-hydroxy-3-methylglutaryl coenzyme A reductase I%2C 3-hydroxy-3-methylglutaryl-CoA reductase 1;Note=Similar to 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1.;Transcript_evidence=AK069555 (DDBJ%2C Best hit);ORF_evidence=Q0DY59 (UniProt);GO=Biological Process: coenzyme A metabolic process (GO:0015936),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: hydroxymethylglutaryl-CoA reductase (NADPH) activity (GO:0004420),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: coenzyme binding (GO:0050662);InterPro=Hydroxymethylglutaryl-CoA reductase%2C class I/II (IPR002202),Hydroxymethylglutaryl-CoA reductase%2C class I/II%2C NAD/NADP-binding (IPR009023),Hydroxymethylglutaryl-CoA reductase%2C class I/II%2C substrate-binding (IPR009029),Hydroxymethylglutaryl-CoA reductase%2C class I/II%2C catalytic domain (IPR023074),Hydroxymethylglutaryl-CoA reductase%2C N-terminal (IPR023282);NIAS_FLcDNA=J023019C15;Oryzabase=14448;TENOR=Os02t0713900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	29591874	29591875	.	-	.	Parent=Os02t0713900-01
Chr02	irgsp1_rep	CDS	29591047	29591873	.	-	0	Parent=Os02t0713900-01
Chr02	irgsp1_rep	CDS	29589730	29589829	.	-	1	Parent=Os02t0713900-01
Chr02	irgsp1_rep	three_prime_UTR	29589698	29589729	.	-	.	Parent=Os02t0713900-01
Chr02	irgsp1_rep	three_prime_UTR	29588798	29588979	.	-	.	Parent=Os02t0713900-01
Chr02	irgsp1_rep	three_prime_UTR	29587838	29588184	.	-	.	Parent=Os02t0713900-01
Chr02	irgsp1_rep	three_prime_UTR	29587196	29587609	.	-	.	Parent=Os02t0713900-01
Chr02	irgsp1_rep	mRNA	29594623	29598898	.	+	.	ID=Os02t0714000-01;Name=Os02t0714000-01;Locus_id=Os02g0714000;Note=Similar to Yarrowia lipolytica Chromosome C of strain CLIB99 of Yarrowia lipolytica.;Transcript_evidence=AK067428 (DDBJ%2C Best hit);ORF_evidence=B6TSJ8 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013107D05;Expression=AK067428;TENOR=Os02t0714000-01;KEGG=Os02t0714000-01
Chr02	irgsp1_rep	five_prime_UTR	29594623	29594813	.	+	.	Parent=Os02t0714000-01
Chr02	irgsp1_rep	CDS	29594814	29595059	.	+	0	Parent=Os02t0714000-01
Chr02	irgsp1_rep	CDS	29595186	29595309	.	+	0	Parent=Os02t0714000-01
Chr02	irgsp1_rep	CDS	29595865	29595991	.	+	2	Parent=Os02t0714000-01
Chr02	irgsp1_rep	CDS	29596264	29596300	.	+	1	Parent=Os02t0714000-01
Chr02	irgsp1_rep	CDS	29596395	29596635	.	+	0	Parent=Os02t0714000-01
Chr02	irgsp1_rep	CDS	29596852	29596940	.	+	2	Parent=Os02t0714000-01
Chr02	irgsp1_rep	three_prime_UTR	29596941	29596969	.	+	.	Parent=Os02t0714000-01
Chr02	irgsp1_rep	three_prime_UTR	29597046	29597138	.	+	.	Parent=Os02t0714000-01
Chr02	irgsp1_rep	three_prime_UTR	29597887	29598898	.	+	.	Parent=Os02t0714000-01
Chr02	irgsp1_rep	mRNA	29594783	29598766	.	+	.	ID=Os02t0714000-02;Name=Os02t0714000-02;Locus_id=Os02g0714000;Note=Similar to Yarrowia lipolytica Chromosome C of strain CLIB99 of Yarrowia lipolytica.;Transcript_evidence=AK073538 (DDBJ%2C Best hit);ORF_evidence=B6TSJ8 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033041C14;Expression=AK073538;TENOR=Os02t0714000-02;KEGG=Os02t0714000-02
Chr02	irgsp1_rep	five_prime_UTR	29594783	29594813	.	+	.	Parent=Os02t0714000-02
Chr02	irgsp1_rep	CDS	29594814	29595059	.	+	0	Parent=Os02t0714000-02
Chr02	irgsp1_rep	CDS	29595186	29595309	.	+	0	Parent=Os02t0714000-02
Chr02	irgsp1_rep	CDS	29595865	29595991	.	+	2	Parent=Os02t0714000-02
Chr02	irgsp1_rep	CDS	29596264	29596300	.	+	1	Parent=Os02t0714000-02
Chr02	irgsp1_rep	CDS	29596395	29596635	.	+	0	Parent=Os02t0714000-02
Chr02	irgsp1_rep	CDS	29596852	29596940	.	+	2	Parent=Os02t0714000-02
Chr02	irgsp1_rep	three_prime_UTR	29596941	29596969	.	+	.	Parent=Os02t0714000-02
Chr02	irgsp1_rep	three_prime_UTR	29597046	29597138	.	+	.	Parent=Os02t0714000-02
Chr02	irgsp1_rep	three_prime_UTR	29597887	29598766	.	+	.	Parent=Os02t0714000-02
Chr02	irgsp1_rep	mRNA	29598301	29598766	.	+	.	ID=Os02t0714000-03;Name=Os02t0714000-03;Locus_id=Os02g0714000;Note=Hypothetical gene.;Transcript_evidence=AK104943 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-107-E11;TENOR=Os02t0714000-03
Chr02	irgsp1_rep	five_prime_UTR	29598301	29598384	.	+	.	Parent=Os02t0714000-03
Chr02	irgsp1_rep	CDS	29598385	29598766	.	+	0	Parent=Os02t0714000-03
Chr02	irgsp1_rep	mRNA	29599167	29601738	.	-	.	ID=Os02t0714100-01;Name=Os02t0714100-01;Locus_id=Os02g0714100;Oryzabase Gene Symbol Synonym(s)=OsDGAT;Oryzabase Gene Name Synonym(s)=diacylglycerolacetyl transferase;Note=Diacylglycerol acyltransferase family protein.;Transcript_evidence=AK071194 (DDBJ%2C Best hit);ORF_evidence=NP_001150174.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Phospholipid/glycerol acyltransferase (IPR002123),Diacylglycerol acyltransferase (IPR007130);NIAS_FLcDNA=J023087O16;Oryzabase=19583;Expression=AK071194;TENOR=Os02t0714100-01;KEGG=Os02t0714100-01
Chr02	irgsp1_rep	five_prime_UTR	29601712	29601738	.	-	.	Parent=Os02t0714100-01
Chr02	irgsp1_rep	CDS	29601494	29601711	.	-	0	Parent=Os02t0714100-01
Chr02	irgsp1_rep	CDS	29601303	29601377	.	-	1	Parent=Os02t0714100-01
Chr02	irgsp1_rep	CDS	29601128	29601213	.	-	1	Parent=Os02t0714100-01
Chr02	irgsp1_rep	CDS	29600735	29600841	.	-	2	Parent=Os02t0714100-01
Chr02	irgsp1_rep	CDS	29600394	29600549	.	-	0	Parent=Os02t0714100-01
Chr02	irgsp1_rep	CDS	29600187	29600273	.	-	0	Parent=Os02t0714100-01
Chr02	irgsp1_rep	CDS	29599977	29600074	.	-	0	Parent=Os02t0714100-01
Chr02	irgsp1_rep	CDS	29599806	29599893	.	-	1	Parent=Os02t0714100-01
Chr02	irgsp1_rep	CDS	29599505	29599606	.	-	0	Parent=Os02t0714100-01
Chr02	irgsp1_rep	three_prime_UTR	29599167	29599504	.	-	.	Parent=Os02t0714100-01
Chr02	irgsp1_rep	mRNA	29604459	29610149	.	-	.	ID=Os02t0714200-01;Name=Os02t0714200-01;Locus_id=Os02g0714200;CGSNL Gene Symbol=PFPA1;CGSNL Gene Name=PYROPHOSPHATE-FRUCTOSE-6-PHOSPHATEPHOSPHOTRANSFERASE ALPHA SUBUNIT 1;Oryzabase Gene Symbol Synonym(s)=OsPFPA1%2C OsPFP1a1%2C PFP1a1;Oryzabase Gene Name Synonym(s)=pyrophosphate-fructose-6-phosphatephosphotransferase  alpha subunit 1%2C PFP-alpha subunit 1%2C catalytic a-subunit 1 of PFP1;Note=Similar to Pyrophosphate--fructose 6-phosphate 1-phosphotransferase alpha subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase%2C pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK).;Transcript_evidence=AK070279 (DDBJ%2C Best hit);ORF_evidence=B6SHF8 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Cellular Component: 6-phosphofructokinase complex (GO:0005945),Molecular Function: 6-phosphofructokinase activity (GO:0003872),Molecular Function: ATP binding (GO:0005524),Molecular Function: diphosphate-fructose-6-phosphate 1-phosphotransferase activity (GO:0047334);InterPro=Phosphofructokinase domain (IPR000023),Pyrophosphate-dependent phosphofructokinase PfpB (IPR011183);NIAS_FLcDNA=J023050A11;Oryzabase=19618;Expression=AK070279;TENOR=Os02t0714200-01;KEGG=Os02t0714200-01 (EC:2.7.1.90)
Chr02	irgsp1_rep	five_prime_UTR	29610041	29610149	.	-	.	Parent=Os02t0714200-01
Chr02	irgsp1_rep	CDS	29609951	29610040	.	-	0	Parent=Os02t0714200-01
Chr02	irgsp1_rep	CDS	29609032	29609204	.	-	0	Parent=Os02t0714200-01
Chr02	irgsp1_rep	CDS	29608700	29608812	.	-	1	Parent=Os02t0714200-01
Chr02	irgsp1_rep	CDS	29607907	29608095	.	-	2	Parent=Os02t0714200-01
Chr02	irgsp1_rep	CDS	29607751	29607818	.	-	2	Parent=Os02t0714200-01
Chr02	irgsp1_rep	CDS	29607547	29607630	.	-	0	Parent=Os02t0714200-01
Chr02	irgsp1_rep	CDS	29607251	29607304	.	-	0	Parent=Os02t0714200-01
Chr02	irgsp1_rep	CDS	29606654	29606734	.	-	0	Parent=Os02t0714200-01
Chr02	irgsp1_rep	CDS	29606474	29606567	.	-	0	Parent=Os02t0714200-01
Chr02	irgsp1_rep	CDS	29606295	29606368	.	-	2	Parent=Os02t0714200-01
Chr02	irgsp1_rep	CDS	29606117	29606227	.	-	0	Parent=Os02t0714200-01
Chr02	irgsp1_rep	CDS	29605982	29606026	.	-	0	Parent=Os02t0714200-01
Chr02	irgsp1_rep	CDS	29605822	29605878	.	-	0	Parent=Os02t0714200-01
Chr02	irgsp1_rep	CDS	29605594	29605699	.	-	0	Parent=Os02t0714200-01
Chr02	irgsp1_rep	CDS	29605395	29605510	.	-	2	Parent=Os02t0714200-01
Chr02	irgsp1_rep	CDS	29605198	29605301	.	-	0	Parent=Os02t0714200-01
Chr02	irgsp1_rep	CDS	29604917	29605082	.	-	1	Parent=Os02t0714200-01
Chr02	irgsp1_rep	CDS	29604680	29604808	.	-	0	Parent=Os02t0714200-01
Chr02	irgsp1_rep	three_prime_UTR	29604459	29604679	.	-	.	Parent=Os02t0714200-01
Chr02	irgsp1_rep	mRNA	29611157	29616251	.	-	.	ID=Os02t0714300-01;Name=Os02t0714300-01;Locus_id=Os02g0714300;Oryzabase Gene Symbol Synonym(s)=OsSTA71%2C OsARID2%2C ARID2;Oryzabase Gene Name Synonym(s)=AT-rich Interaction Domain-containing protein 2;Note=AT-rich interaction region domain containing protein.;Transcript_evidence=AK107036 (DDBJ%2C Best hit);ORF_evidence=NP_001147977.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: DNA binding (GO:0003677);InterPro=ARID/BRIGHT DNA-binding domain (IPR001606),Heat shock protein Hsp20 (IPR002068),HSP20-like chaperone (IPR008978);NIAS_FLcDNA=002-121-B09;Oryzabase=19371;Expression=AK107036;TENOR=Os02t0714300-01;KEGG=Os02t0714300-01
Chr02	irgsp1_rep	five_prime_UTR	29616131	29616251	.	-	.	Parent=Os02t0714300-01
Chr02	irgsp1_rep	CDS	29615445	29616130	.	-	0	Parent=Os02t0714300-01
Chr02	irgsp1_rep	CDS	29615307	29615346	.	-	1	Parent=Os02t0714300-01
Chr02	irgsp1_rep	CDS	29615084	29615136	.	-	0	Parent=Os02t0714300-01
Chr02	irgsp1_rep	CDS	29614947	29614992	.	-	1	Parent=Os02t0714300-01
Chr02	irgsp1_rep	CDS	29614284	29614376	.	-	0	Parent=Os02t0714300-01
Chr02	irgsp1_rep	CDS	29612940	29613059	.	-	0	Parent=Os02t0714300-01
Chr02	irgsp1_rep	CDS	29612827	29612857	.	-	0	Parent=Os02t0714300-01
Chr02	irgsp1_rep	CDS	29612659	29612734	.	-	2	Parent=Os02t0714300-01
Chr02	irgsp1_rep	CDS	29612371	29612437	.	-	1	Parent=Os02t0714300-01
Chr02	irgsp1_rep	CDS	29612176	29612226	.	-	0	Parent=Os02t0714300-01
Chr02	irgsp1_rep	CDS	29611915	29612007	.	-	0	Parent=Os02t0714300-01
Chr02	irgsp1_rep	CDS	29611731	29611835	.	-	0	Parent=Os02t0714300-01
Chr02	irgsp1_rep	three_prime_UTR	29611672	29611730	.	-	.	Parent=Os02t0714300-01
Chr02	irgsp1_rep	three_prime_UTR	29611157	29611587	.	-	.	Parent=Os02t0714300-01
Chr02	irgsp1_rep	mRNA	29618530	29624340	.	+	.	ID=Os02t0714500-01;Name=Os02t0714500-01;Locus_id=Os02g0714500;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK103759 (DDBJ%2C Best hit);ORF_evidence=XP_002866783.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Tetratricopeptide-like helical (IPR011990),Domain of unknown function DUF1683%2C C-terminal (IPR012880),Foie gras liver health family 1 (IPR021773);NIAS_FLcDNA=J033143F20;Expression=AK103759;TENOR=Os02t0714500-01;KEGG=Os02t0714500-01
Chr02	irgsp1_rep	five_prime_UTR	29618530	29618666	.	+	.	Parent=Os02t0714500-01
Chr02	irgsp1_rep	CDS	29618667	29619013	.	+	0	Parent=Os02t0714500-01
Chr02	irgsp1_rep	CDS	29619221	29619282	.	+	1	Parent=Os02t0714500-01
Chr02	irgsp1_rep	CDS	29619554	29619668	.	+	2	Parent=Os02t0714500-01
Chr02	irgsp1_rep	CDS	29619803	29619926	.	+	1	Parent=Os02t0714500-01
Chr02	irgsp1_rep	CDS	29620111	29620191	.	+	0	Parent=Os02t0714500-01
Chr02	irgsp1_rep	CDS	29620629	29620970	.	+	0	Parent=Os02t0714500-01
Chr02	irgsp1_rep	CDS	29621069	29621235	.	+	0	Parent=Os02t0714500-01
Chr02	irgsp1_rep	CDS	29621317	29622146	.	+	1	Parent=Os02t0714500-01
Chr02	irgsp1_rep	CDS	29622615	29622658	.	+	2	Parent=Os02t0714500-01
Chr02	irgsp1_rep	three_prime_UTR	29622659	29624340	.	+	.	Parent=Os02t0714500-01
Chr02	irgsp1_rep	mRNA	29621424	29624437	.	+	.	ID=Os02t0714500-02;Name=Os02t0714500-02;Locus_id=Os02g0714500;Note=Similar to binding protein.;Transcript_evidence=AK066821 (DDBJ%2C Best hit);ORF_evidence=XP_002866783.1 (RefSeq);InterPro=Domain of unknown function DUF1683%2C C-terminal (IPR012880),Foie gras liver health family 1 (IPR021773);NIAS_FLcDNA=J013079H02;TENOR=Os02t0714500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	29621424	29621425	.	+	.	Parent=Os02t0714500-02
Chr02	irgsp1_rep	CDS	29621426	29622146	.	+	0	Parent=Os02t0714500-02
Chr02	irgsp1_rep	CDS	29622610	29624075	.	+	2	Parent=Os02t0714500-02
Chr02	irgsp1_rep	three_prime_UTR	29624076	29624437	.	+	.	Parent=Os02t0714500-02
Chr02	irgsp1_rep	mRNA	29623854	29624338	.	+	.	ID=Os02t0714500-03;Name=Os02t0714500-03;Locus_id=Os02g0714500;Note=Similar to predicted protein.;Transcript_evidence=AK063867 (DDBJ%2C Best hit);ORF_evidence=XP_002866783.1 (RefSeq);NIAS_FLcDNA=001-122-E05;Expression=AK063867;TENOR=Os02t0714500-03;KEGG=Os02t0714500-03
Chr02	irgsp1_rep	CDS	29623854	29624075	.	+	0	Parent=Os02t0714500-03
Chr02	irgsp1_rep	three_prime_UTR	29624076	29624338	.	+	.	Parent=Os02t0714500-03
Chr02	irgsp1_rep	mRNA	29625540	29627758	.	+	.	ID=Os02t0714600-01;Name=Os02t0714600-01;Locus_id=Os02g0714600;Note=Ribose-phosphate pyrophosphokinase 4 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 4).;Transcript_evidence=AK068469 (DDBJ%2C Best hit);ORF_evidence=B6TXX0 (UniProt);GO=Biological Process: nucleoside metabolic process (GO:0009116),Biological Process: nucleotide biosynthetic process (GO:0009165),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: ribose phosphate diphosphokinase activity (GO:0004749);InterPro=Phosphoribosyltransferase (IPR000836),Ribose-phosphate diphosphokinase (IPR005946);NIAS_FLcDNA=J013156D24;Expression=AK068469;TENOR=Os02t0714600-01;KEGG=Os02t0714600-01 (EC:2.7.6.1)
Chr02	irgsp1_rep	five_prime_UTR	29625540	29625772	.	+	.	Parent=Os02t0714600-01
Chr02	irgsp1_rep	CDS	29625773	29625906	.	+	0	Parent=Os02t0714600-01
Chr02	irgsp1_rep	CDS	29626009	29626420	.	+	1	Parent=Os02t0714600-01
Chr02	irgsp1_rep	CDS	29626514	29626582	.	+	0	Parent=Os02t0714600-01
Chr02	irgsp1_rep	CDS	29626712	29626840	.	+	0	Parent=Os02t0714600-01
Chr02	irgsp1_rep	CDS	29627278	29627377	.	+	0	Parent=Os02t0714600-01
Chr02	irgsp1_rep	CDS	29627455	29627588	.	+	2	Parent=Os02t0714600-01
Chr02	irgsp1_rep	three_prime_UTR	29627589	29627758	.	+	.	Parent=Os02t0714600-01
Chr02	irgsp1_rep	mRNA	29625697	29627755	.	+	.	ID=Os02t0714600-02;Name=Os02t0714600-02;Locus_id=Os02g0714600;Note=Ribose-phosphate pyrophosphokinase 4 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 4).;Transcript_evidence=AK104867 (DDBJ%2C Best hit),AK103643 (DDBJ%2C Best hit);ORF_evidence=B6TXX0 (UniProt);GO=Biological Process: nucleoside metabolic process (GO:0009116),Biological Process: nucleotide biosynthetic process (GO:0009165),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: ribose phosphate diphosphokinase activity (GO:0004749);InterPro=Phosphoribosyltransferase (IPR000836),Ribose-phosphate diphosphokinase (IPR005946);NIAS_FLcDNA=001-043-H04,J033134O12;Expression=AK104867;TENOR=Os02t0714600-02;KEGG=Os02t0714600-02 (EC:2.7.6.1)
Chr02	irgsp1_rep	five_prime_UTR	29625697	29625772	.	+	.	Parent=Os02t0714600-02
Chr02	irgsp1_rep	CDS	29625773	29625906	.	+	0	Parent=Os02t0714600-02
Chr02	irgsp1_rep	CDS	29626009	29626420	.	+	1	Parent=Os02t0714600-02
Chr02	irgsp1_rep	CDS	29626514	29626582	.	+	0	Parent=Os02t0714600-02
Chr02	irgsp1_rep	CDS	29626712	29626840	.	+	0	Parent=Os02t0714600-02
Chr02	irgsp1_rep	CDS	29627278	29627377	.	+	0	Parent=Os02t0714600-02
Chr02	irgsp1_rep	CDS	29627455	29627588	.	+	2	Parent=Os02t0714600-02
Chr02	irgsp1_rep	three_prime_UTR	29627589	29627755	.	+	.	Parent=Os02t0714600-02
Chr02	irgsp1_rep	mRNA	29635986	29639344	.	+	.	ID=Os02t0714700-01;Name=Os02t0714700-01;Locus_id=Os02g0714700;Note=Hypothetical protein.;Transcript_evidence=AK067734 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J013118K13;Expression=AK067734;TENOR=Os02t0714700-01;KEGG=Os02t0714700-01
Chr02	irgsp1_rep	five_prime_UTR	29635986	29636413	.	+	.	Parent=Os02t0714700-01
Chr02	irgsp1_rep	five_prime_UTR	29636730	29636874	.	+	.	Parent=Os02t0714700-01
Chr02	irgsp1_rep	CDS	29636875	29636886	.	+	0	Parent=Os02t0714700-01
Chr02	irgsp1_rep	CDS	29637888	29638169	.	+	0	Parent=Os02t0714700-01
Chr02	irgsp1_rep	three_prime_UTR	29638170	29638278	.	+	.	Parent=Os02t0714700-01
Chr02	irgsp1_rep	three_prime_UTR	29638497	29638684	.	+	.	Parent=Os02t0714700-01
Chr02	irgsp1_rep	three_prime_UTR	29638762	29638973	.	+	.	Parent=Os02t0714700-01
Chr02	irgsp1_rep	three_prime_UTR	29639074	29639344	.	+	.	Parent=Os02t0714700-01
Chr02	irgsp1_rep	mRNA	29659062	29659686	.	-	.	ID=Os02t0714801-00;Name=Os02t0714801-00;Locus_id=Os02g0714801;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2X865 (UniProt);TENOR=Os02t0714801-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	29659401	29659686	.	-	0	Parent=Os02t0714801-00
Chr02	irgsp1_rep	CDS	29659062	29659354	.	-	2	Parent=Os02t0714801-00
Chr02	irgsp1_rep	mRNA	29667743	29669572	.	+	.	ID=Os02t0715000-01;Name=Os02t0715000-01;Locus_id=Os02g0715000;Oryzabase Gene Name Synonym(s)=Xylem Cys proteinase 2;Note=Similar to Cysteine proteinase.;Transcript_evidence=AK104296 (DDBJ%2C Best hit),AK060534 (DDBJ%2C Best hit);ORF_evidence=B4ESG1 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase%2C cysteine peptidase active site (IPR000169),Peptidase C1A%2C papain C-terminal (IPR000668),Peptidase C1A%2C papain (IPR013128),Proteinase inhibitor I29%2C cathepsin propeptide (IPR013201);NIAS_FLcDNA=001-008-H03,001-021-A12;Oryzabase=11252;Expression=AK104296;TENOR=Os02t0715000-01;KEGG=Os02t0715000-01
Chr02	irgsp1_rep	CDS	29667743	29668235	.	+	0	Parent=Os02t0715000-01
Chr02	irgsp1_rep	CDS	29668585	29668820	.	+	2	Parent=Os02t0715000-01
Chr02	irgsp1_rep	CDS	29668942	29669082	.	+	0	Parent=Os02t0715000-01
Chr02	irgsp1_rep	CDS	29669192	29669422	.	+	0	Parent=Os02t0715000-01
Chr02	irgsp1_rep	three_prime_UTR	29669423	29669572	.	+	.	Parent=Os02t0715000-01
Chr02	irgsp1_rep	mRNA	29670746	29675020	.	+	.	ID=Os02t0715200-01;Name=Os02t0715200-01;Locus_id=Os02g0715200;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK070855 (DDBJ%2C Best hit);ORF_evidence=NP_180921.1 (RefSeq);GO=Biological Process: steroid biosynthetic process (GO:0006694),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: 3-beta-hydroxy-delta5-steroid dehydrogenase activity (GO:0003854),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616);InterPro=3-beta hydroxysteroid dehydrogenase/isomerase (IPR002225),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023066G02;Expression=AK070855;TENOR=Os02t0715200-01;KEGG=Os02t0715200-01
Chr02	irgsp1_rep	five_prime_UTR	29670746	29670765	.	+	.	Parent=Os02t0715200-01
Chr02	irgsp1_rep	CDS	29670766	29670955	.	+	0	Parent=Os02t0715200-01
Chr02	irgsp1_rep	CDS	29671374	29671716	.	+	2	Parent=Os02t0715200-01
Chr02	irgsp1_rep	CDS	29671982	29672253	.	+	1	Parent=Os02t0715200-01
Chr02	irgsp1_rep	CDS	29672789	29672985	.	+	2	Parent=Os02t0715200-01
Chr02	irgsp1_rep	CDS	29673381	29673815	.	+	0	Parent=Os02t0715200-01
Chr02	irgsp1_rep	three_prime_UTR	29673816	29675020	.	+	.	Parent=Os02t0715200-01
Chr02	irgsp1_rep	mRNA	29672121	29675896	.	+	.	ID=Os02t0715200-02;Name=Os02t0715200-02;Locus_id=Os02g0715200;Note=Similar to 3-beta hydroxysteroid dehydrogenase/isomerase family protein.;Transcript_evidence=AK289106 (DDBJ%2C Best hit);ORF_evidence=NP_180921.1 (RefSeq);NIAS_FLcDNA=J090096J03;TENOR=Os02t0715200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	29672121	29672742	.	+	.	Parent=Os02t0715200-02
Chr02	irgsp1_rep	CDS	29672743	29673012	.	+	0	Parent=Os02t0715200-02
Chr02	irgsp1_rep	three_prime_UTR	29673013	29675896	.	+	.	Parent=Os02t0715200-02
Chr02	irgsp1_rep	mRNA	29670757	29673885	.	-	.	ID=Os02t0715225-00;Name=Os02t0715225-00;Locus_id=Os02g0715225;Note=Hypothetical protein.;Transcript_evidence=tplb0060h18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0715225-00
Chr02	irgsp1_rep	five_prime_UTR	29673379	29673885	.	-	.	Parent=Os02t0715225-00
Chr02	irgsp1_rep	five_prime_UTR	29672805	29672990	.	-	.	Parent=Os02t0715225-00
Chr02	irgsp1_rep	five_prime_UTR	29671980	29672268	.	-	.	Parent=Os02t0715225-00
Chr02	irgsp1_rep	five_prime_UTR	29671453	29671712	.	-	.	Parent=Os02t0715225-00
Chr02	irgsp1_rep	CDS	29671363	29671452	.	-	0	Parent=Os02t0715225-00
Chr02	irgsp1_rep	CDS	29670757	29670944	.	-	0	Parent=Os02t0715225-00
Chr02	irgsp1_rep	mRNA	29675632	29676023	.	-	.	ID=Os02t0715250-00;Name=Os02t0715250-00;Locus_id=Os02g0715250;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os02t0715250-00;KEGG=Os02t0715250-00
Chr02	irgsp1_rep	CDS	29675949	29676023	.	-	0	Parent=Os02t0715250-00
Chr02	irgsp1_rep	CDS	29675632	29675823	.	-	0	Parent=Os02t0715250-00
Chr02	irgsp1_rep	mRNA	29676022	29677029	.	+	.	ID=Os02t0715300-01;Name=Os02t0715300-01;Locus_id=Os02g0715300;Note=Conserved hypothetical protein.;Transcript_evidence=AK059816 (DDBJ%2C Best hit);ORF_evidence=A2X8X5 (UniProt);NIAS_FLcDNA=006-205-B12;Expression=AK059816;TENOR=Os02t0715300-01;KEGG=Os02t0715300-01
Chr02	irgsp1_rep	five_prime_UTR	29676022	29676137	.	+	.	Parent=Os02t0715300-01
Chr02	irgsp1_rep	CDS	29676138	29676689	.	+	0	Parent=Os02t0715300-01
Chr02	irgsp1_rep	three_prime_UTR	29676690	29677029	.	+	.	Parent=Os02t0715300-01
Chr02	irgsp1_rep	mRNA	29676045	29677031	.	+	.	ID=Os02t0715300-02;Name=Os02t0715300-02;Locus_id=Os02g0715300;Note=Conserved hypothetical protein.;Transcript_evidence=AK069489 (DDBJ%2C Best hit);ORF_evidence=A2X8X5 (UniProt);NIAS_FLcDNA=J023024J01;Expression=AK069489;TENOR=Os02t0715300-02;KEGG=Os02t0715300-02
Chr02	irgsp1_rep	five_prime_UTR	29676045	29676137	.	+	.	Parent=Os02t0715300-02
Chr02	irgsp1_rep	CDS	29676138	29676689	.	+	0	Parent=Os02t0715300-02
Chr02	irgsp1_rep	three_prime_UTR	29676690	29677031	.	+	.	Parent=Os02t0715300-02
Chr02	irgsp1_rep	mRNA	29677904	29678513	.	+	.	ID=Os02t0715400-00;Name=Os02t0715400-00;Locus_id=Os02g0715400;Note=Conserved hypothetical protein.;Transcript_evidence=CU861701 (DDBJ%2C Best hit);ORF_evidence=NP_001047926.1 (RefSeq);TENOR=Os02t0715400-00;KEGG=Os02t0715400-00
Chr02	irgsp1_rep	five_prime_UTR	29677904	29677942	.	+	.	Parent=Os02t0715400-00
Chr02	irgsp1_rep	CDS	29677943	29678248	.	+	0	Parent=Os02t0715400-00
Chr02	irgsp1_rep	three_prime_UTR	29678249	29678513	.	+	.	Parent=Os02t0715400-00
Chr02	irgsp1_rep	mRNA	29715769	29718849	.	-	.	ID=Os02t0716100-01;Name=Os02t0716100-01;Locus_id=Os02g0716100;Note=Hypothetical conserved gene.;Transcript_evidence=AK100385 (DDBJ%2C Best hit);ORF_evidence=B9F2D2 (UniProt);NIAS_FLcDNA=J023085H14;Expression=AK100385;TENOR=Os02t0716100-01;KEGG=Os02t0716100-01
Chr02	irgsp1_rep	five_prime_UTR	29717332	29718849	.	-	.	Parent=Os02t0716100-01
Chr02	irgsp1_rep	CDS	29717164	29717331	.	-	0	Parent=Os02t0716100-01
Chr02	irgsp1_rep	three_prime_UTR	29715769	29717163	.	-	.	Parent=Os02t0716100-01
Chr02	irgsp1_rep	mRNA	29725501	29730352	.	-	.	ID=Os02t0716500-01;Name=Os02t0716500-01;Locus_id=Os02g0716500;RAP-DB Gene Symbol Synonym(s)=OsFAD2%2C OsFAD2-1;RAP-DB Gene Name Synonym(s)=fatty acid desaturase 2%2C microsomal delta-12 fatty acid desaturase%2C microsomal Delta12-fatty acid desaturase 2-1;Oryzabase Gene Symbol Synonym(s)=OsFAD2%2C OsFAD2-1%2C OsaFAD2-1%2C FAD2-1;Oryzabase Gene Name Synonym(s)=fatty acid desaturase 2%2C microsomal delta-12 fatty acid desaturase%2C microsomal Delta12-fatty acid desaturase 2-1;Note=Delta12-fatty acid desaturase;Transcript_evidence=FJ768953,AK072282,AK065239;ORF_evidence=Q6ZGW6;GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water (GO:0016717);InterPro=Fatty acid desaturase%2C N-terminal (IPR021863),Fatty acid desaturase domain (IPR005804);NIAS_FLcDNA=J023010C06, J013002I05;Manual Curation=September 5%2C 2016;Literature_PMID=27581494;Oryzabase=15171;Expression=AK072282;TENOR=Os02t0716500-01;KEGG=Os02t0716500-01 (EC:1.14.19.-)
Chr02	irgsp1_rep	five_prime_UTR	29730199	29730352	.	-	.	Parent=Os02t0716500-01
Chr02	irgsp1_rep	five_prime_UTR	29727042	29727045	.	-	.	Parent=Os02t0716500-01
Chr02	irgsp1_rep	CDS	29725875	29727041	.	-	0	Parent=Os02t0716500-01
Chr02	irgsp1_rep	three_prime_UTR	29725501	29725874	.	-	.	Parent=Os02t0716500-01
Chr02	irgsp1_rep	mRNA	29725329	29725767	.	-	.	ID=Os02t0716500-03;Name=Os02t0716500-03;Locus_id=Os02g0716500;Oryzabase Gene Symbol Synonym(s)=OsFAD2%2C OsFAD2-1%2C OsaFAD2-1%2C FAD2-1;Oryzabase Gene Name Synonym(s)=fatty acid desaturase 2%2C microsomal delta-12 fatty acid desaturase%2C microsomal Delta12-fatty acid desaturase 2-1;Note=Hypothetical protein.;Transcript_evidence=AK061931 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-042-C11;Oryzabase=15171;TENOR=Os02t0716500-03;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	29725575	29725767	.	-	.	Parent=Os02t0716500-03
Chr02	irgsp1_rep	CDS	29725359	29725574	.	-	0	Parent=Os02t0716500-03
Chr02	irgsp1_rep	three_prime_UTR	29725329	29725358	.	-	.	Parent=Os02t0716500-03
Chr02	irgsp1_rep	mRNA	29725329	29726505	.	-	.	ID=Os02t0716500-04;Name=Os02t0716500-04;Locus_id=Os02g0716500;Oryzabase Gene Symbol Synonym(s)=OsFAD2%2C OsFAD2-1%2C OsaFAD2-1%2C FAD2-1;Oryzabase Gene Name Synonym(s)=fatty acid desaturase 2%2C microsomal delta-12 fatty acid desaturase%2C microsomal Delta12-fatty acid desaturase 2-1;Note=Similar to Delta-12 fatty acid desaturase.;Transcript_evidence=AK061506 (DDBJ%2C Best hit);ORF_evidence=Q1T6Y2 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629);InterPro=Fatty acid desaturase%2C type 1 (IPR005804);NIAS_FLcDNA=006-309-F04;Oryzabase=15171;TENOR=Os02t0716500-04
Chr02	irgsp1_rep	five_prime_UTR	29726505	29726505	.	-	.	Parent=Os02t0716500-04
Chr02	irgsp1_rep	CDS	29725875	29726504	.	-	0	Parent=Os02t0716500-04
Chr02	irgsp1_rep	three_prime_UTR	29725329	29725874	.	-	.	Parent=Os02t0716500-04
Chr02	irgsp1_rep	mRNA	29729407	29730106	.	-	.	ID=Os02t0716600-01;Name=Os02t0716600-01;Locus_id=Os02g0716600;Note=Non-protein coding transcript.;Transcript_evidence=AK063131 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-111-F07;TENOR=Os02t0716600-01
Chr02	irgsp1_rep	exon	29729407	29730106	.	-	.	Parent=Os02t0716600-01
Chr02	irgsp1_rep	mRNA	29736312	29741711	.	-	.	ID=Os02t0716800-01;Name=Os02t0716800-01;Locus_id=Os02g0716800;CGSNL Gene Symbol=NRT1.5B;CGSNL Gene Name=NITRATE TRANSPORTER 1.5B;Oryzabase Gene Symbol Synonym(s)=OsNRT1.5B;Oryzabase Gene Name Synonym(s)=nitrate transporter 1.5B;Note=TGF-beta receptor%2C type I/II extracellular region family protein.;Transcript_evidence=AK287911 (DDBJ%2C Best hit);ORF_evidence=Q2HUR9 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J065213B08;Oryzabase=19903;TENOR=Os02t0716800-01;KEGG=Os02t0716800-01
Chr02	irgsp1_rep	five_prime_UTR	29741453	29741711	.	-	.	Parent=Os02t0716800-01
Chr02	irgsp1_rep	five_prime_UTR	29741251	29741372	.	-	.	Parent=Os02t0716800-01
Chr02	irgsp1_rep	five_prime_UTR	29740799	29740890	.	-	.	Parent=Os02t0716800-01
Chr02	irgsp1_rep	five_prime_UTR	29739575	29739583	.	-	.	Parent=Os02t0716800-01
Chr02	irgsp1_rep	CDS	29739448	29739574	.	-	0	Parent=Os02t0716800-01
Chr02	irgsp1_rep	CDS	29738565	29738782	.	-	2	Parent=Os02t0716800-01
Chr02	irgsp1_rep	CDS	29737888	29738447	.	-	0	Parent=Os02t0716800-01
Chr02	irgsp1_rep	CDS	29736514	29737363	.	-	1	Parent=Os02t0716800-01
Chr02	irgsp1_rep	three_prime_UTR	29736312	29736513	.	-	.	Parent=Os02t0716800-01
Chr02	irgsp1_rep	mRNA	29736507	29738451	.	+	.	ID=Os02t0716950-00;Name=Os02t0716950-00;Locus_id=Os02g0716950;Note=Hypothetical protein.;Transcript_evidence=tplb0061c10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0716950-00
Chr02	irgsp1_rep	five_prime_UTR	29736507	29736507	.	+	.	Parent=Os02t0716950-00
Chr02	irgsp1_rep	CDS	29736508	29737336	.	+	0	Parent=Os02t0716950-00
Chr02	irgsp1_rep	CDS	29737833	29737891	.	+	2	Parent=Os02t0716950-00
Chr02	irgsp1_rep	three_prime_UTR	29737892	29738451	.	+	.	Parent=Os02t0716950-00
Chr02	irgsp1_rep	mRNA	29745546	29747405	.	+	.	ID=Os02t0717100-01;Name=Os02t0717100-01;Locus_id=Os02g0717100;Note=Esterase/lipase/thioesterase domain containing protein.;Transcript_evidence=AK063741 (DDBJ%2C Best hit);ORF_evidence=XP_002454388.1 (RefSeq);NIAS_FLcDNA=001-120-F08;Expression=AK063741;TENOR=Os02t0717100-01;KEGG=Os02t0717100-01
Chr02	irgsp1_rep	five_prime_UTR	29745546	29745682	.	+	.	Parent=Os02t0717100-01
Chr02	irgsp1_rep	CDS	29745683	29746025	.	+	0	Parent=Os02t0717100-01
Chr02	irgsp1_rep	CDS	29746858	29747186	.	+	2	Parent=Os02t0717100-01
Chr02	irgsp1_rep	three_prime_UTR	29747187	29747405	.	+	.	Parent=Os02t0717100-01
Chr02	irgsp1_rep	mRNA	29753204	29753612	.	+	.	ID=Os02t0717200-00;Name=Os02t0717200-00;Locus_id=Os02g0717200;Note=Similar to predicted protein.;Transcript_evidence=EU605817 (DDBJ%2C Best hit);ORF_evidence=NP_001047930.1 (RefSeq);TENOR=Os02t0717200-00
Chr02	irgsp1_rep	five_prime_UTR	29753204	29753205	.	+	.	Parent=Os02t0717200-00
Chr02	irgsp1_rep	CDS	29753206	29753612	.	+	0	Parent=Os02t0717200-00
Chr02	irgsp1_rep	mRNA	29756011	29758526	.	+	.	ID=Os02t0717300-01;Name=Os02t0717300-01;Locus_id=Os02g0717300;Note=Mitochondrial import inner membrane translocase%2C subunit Tim17/22 family protein.;Transcript_evidence=AK065836 (DDBJ%2C Best hit);ORF_evidence=NP_001147166.1 (RefSeq);InterPro=Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 (IPR003397);NIAS_FLcDNA=J013037P14;Expression=AK065836;TENOR=Os02t0717300-01;KEGG=Os02t0717300-01
Chr02	irgsp1_rep	five_prime_UTR	29756011	29756338	.	+	.	Parent=Os02t0717300-01
Chr02	irgsp1_rep	CDS	29756339	29756648	.	+	0	Parent=Os02t0717300-01
Chr02	irgsp1_rep	CDS	29758172	29758314	.	+	2	Parent=Os02t0717300-01
Chr02	irgsp1_rep	three_prime_UTR	29758315	29758526	.	+	.	Parent=Os02t0717300-01
Chr02	irgsp1_rep	mRNA	29763622	29774996	.	-	.	ID=Os02t0717400-01;Name=Os02t0717400-01;Locus_id=Os02g0717400;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK121612 (DDBJ%2C Best hit);ORF_evidence=NP_190782.3 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734),GSKIP/TIF31 domain (IPR023231);NIAS_FLcDNA=J033043J17;Expression=AK121612;TENOR=Os02t0717400-01;KEGG=Os02t0717400-01
Chr02	irgsp1_rep	five_prime_UTR	29774879	29774996	.	-	.	Parent=Os02t0717400-01
Chr02	irgsp1_rep	five_prime_UTR	29774615	29774619	.	-	.	Parent=Os02t0717400-01
Chr02	irgsp1_rep	CDS	29774386	29774614	.	-	0	Parent=Os02t0717400-01
Chr02	irgsp1_rep	CDS	29773607	29773668	.	-	2	Parent=Os02t0717400-01
Chr02	irgsp1_rep	CDS	29773339	29773528	.	-	0	Parent=Os02t0717400-01
Chr02	irgsp1_rep	CDS	29773111	29773251	.	-	2	Parent=Os02t0717400-01
Chr02	irgsp1_rep	CDS	29772817	29772976	.	-	2	Parent=Os02t0717400-01
Chr02	irgsp1_rep	CDS	29772491	29772684	.	-	1	Parent=Os02t0717400-01
Chr02	irgsp1_rep	CDS	29772302	29772403	.	-	2	Parent=Os02t0717400-01
Chr02	irgsp1_rep	CDS	29771730	29771865	.	-	2	Parent=Os02t0717400-01
Chr02	irgsp1_rep	CDS	29771529	29771657	.	-	1	Parent=Os02t0717400-01
Chr02	irgsp1_rep	CDS	29770884	29771262	.	-	1	Parent=Os02t0717400-01
Chr02	irgsp1_rep	CDS	29770183	29770287	.	-	0	Parent=Os02t0717400-01
Chr02	irgsp1_rep	CDS	29769394	29769512	.	-	0	Parent=Os02t0717400-01
Chr02	irgsp1_rep	CDS	29769017	29769125	.	-	1	Parent=Os02t0717400-01
Chr02	irgsp1_rep	CDS	29768855	29768923	.	-	0	Parent=Os02t0717400-01
Chr02	irgsp1_rep	CDS	29768267	29768467	.	-	0	Parent=Os02t0717400-01
Chr02	irgsp1_rep	CDS	29768023	29768193	.	-	0	Parent=Os02t0717400-01
Chr02	irgsp1_rep	CDS	29767854	29767940	.	-	0	Parent=Os02t0717400-01
Chr02	irgsp1_rep	CDS	29767474	29767605	.	-	0	Parent=Os02t0717400-01
Chr02	irgsp1_rep	CDS	29767235	29767384	.	-	0	Parent=Os02t0717400-01
Chr02	irgsp1_rep	CDS	29767094	29767162	.	-	0	Parent=Os02t0717400-01
Chr02	irgsp1_rep	CDS	29766797	29766955	.	-	0	Parent=Os02t0717400-01
Chr02	irgsp1_rep	CDS	29766393	29766449	.	-	0	Parent=Os02t0717400-01
Chr02	irgsp1_rep	CDS	29766279	29766319	.	-	0	Parent=Os02t0717400-01
Chr02	irgsp1_rep	CDS	29766036	29766155	.	-	1	Parent=Os02t0717400-01
Chr02	irgsp1_rep	CDS	29765472	29765781	.	-	1	Parent=Os02t0717400-01
Chr02	irgsp1_rep	CDS	29765288	29765395	.	-	0	Parent=Os02t0717400-01
Chr02	irgsp1_rep	CDS	29764826	29764894	.	-	0	Parent=Os02t0717400-01
Chr02	irgsp1_rep	CDS	29763889	29764371	.	-	0	Parent=Os02t0717400-01
Chr02	irgsp1_rep	three_prime_UTR	29763622	29763888	.	-	.	Parent=Os02t0717400-01
Chr02	irgsp1_rep	mRNA	29783348	29786041	.	+	.	ID=Os02t0717500-01;Name=Os02t0717500-01;Locus_id=Os02g0717500;Note=Similar to X7 (Fragment).;Transcript_evidence=AK067050 (DDBJ%2C Best hit);ORF_evidence=B2CZN2 (UniProt);NIAS_FLcDNA=J013092A12;Expression=AK067050;TENOR=Os02t0717500-01;KEGG=Os02t0717500-01
Chr02	irgsp1_rep	five_prime_UTR	29783348	29783533	.	+	.	Parent=Os02t0717500-01
Chr02	irgsp1_rep	CDS	29783534	29783788	.	+	0	Parent=Os02t0717500-01
Chr02	irgsp1_rep	CDS	29783975	29784148	.	+	0	Parent=Os02t0717500-01
Chr02	irgsp1_rep	CDS	29784262	29784354	.	+	0	Parent=Os02t0717500-01
Chr02	irgsp1_rep	CDS	29784428	29784496	.	+	0	Parent=Os02t0717500-01
Chr02	irgsp1_rep	CDS	29784738	29784944	.	+	0	Parent=Os02t0717500-01
Chr02	irgsp1_rep	CDS	29785261	29785386	.	+	0	Parent=Os02t0717500-01
Chr02	irgsp1_rep	CDS	29785503	29785655	.	+	0	Parent=Os02t0717500-01
Chr02	irgsp1_rep	three_prime_UTR	29785656	29786041	.	+	.	Parent=Os02t0717500-01
Chr02	irgsp1_rep	mRNA	29784736	29785883	.	-	.	ID=Os02t0717550-00;Name=Os02t0717550-00;Locus_id=Os02g0717550;Note=Non-protein coding transcript.;Transcript_evidence=BT018944 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0717550-00
Chr02	irgsp1_rep	exon	29785513	29785883	.	-	.	Parent=Os02t0717550-00
Chr02	irgsp1_rep	exon	29785241	29785393	.	-	.	Parent=Os02t0717550-00
Chr02	irgsp1_rep	exon	29784736	29784923	.	-	.	Parent=Os02t0717550-00
Chr02	irgsp1_rep	mRNA	29786242	29789844	.	-	.	ID=Os02t0717600-01;Name=Os02t0717600-01;Locus_id=Os02g0717600;Note=Similar to predicted protein.;Transcript_evidence=AK243672 (DDBJ%2C Best hit);ORF_evidence=Q6ZGV6 (UniProt);NIAS_FLcDNA=J100090A12;TENOR=Os02t0717600-01;KEGG=Os02t0717600-01
Chr02	irgsp1_rep	five_prime_UTR	29789669	29789844	.	-	.	Parent=Os02t0717600-01
Chr02	irgsp1_rep	CDS	29789155	29789668	.	-	0	Parent=Os02t0717600-01
Chr02	irgsp1_rep	CDS	29787485	29787768	.	-	2	Parent=Os02t0717600-01
Chr02	irgsp1_rep	CDS	29787165	29787392	.	-	0	Parent=Os02t0717600-01
Chr02	irgsp1_rep	CDS	29786446	29787054	.	-	0	Parent=Os02t0717600-01
Chr02	irgsp1_rep	three_prime_UTR	29786242	29786445	.	-	.	Parent=Os02t0717600-01
Chr02	irgsp1_rep	mRNA	29786725	29787716	.	+	.	ID=Os02t0717650-00;Name=Os02t0717650-00;Locus_id=Os02g0717650;Note=Non-protein coding transcript.;Transcript_evidence=AK361018 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0717650-00
Chr02	irgsp1_rep	exon	29786725	29787056	.	+	.	Parent=Os02t0717650-00
Chr02	irgsp1_rep	exon	29787156	29787366	.	+	.	Parent=Os02t0717650-00
Chr02	irgsp1_rep	exon	29787465	29787716	.	+	.	Parent=Os02t0717650-00
Chr02	irgsp1_rep	mRNA	29792890	29793556	.	+	.	ID=Os02t0717700-01;Name=Os02t0717700-01;Locus_id=Os02g0717700;Note=Acyl-CoA N-acyltransferase domain containing protein.;Transcript_evidence=AK063075 (DDBJ%2C Best hit);ORF_evidence=F2DNU7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: N-acetyltransferase activity (GO:0008080);InterPro=GCN5-related N-acetyltransferase (GNAT) domain (IPR000182),Acyl-CoA N-acyltransferase (IPR016181);NIAS_FLcDNA=001-110-H08;Expression=AK063075;TENOR=Os02t0717700-01;KEGG=Os02t0717700-01 (EC:2.3.1.4)
Chr02	irgsp1_rep	CDS	29792890	29793363	.	+	0	Parent=Os02t0717700-01
Chr02	irgsp1_rep	three_prime_UTR	29793364	29793556	.	+	.	Parent=Os02t0717700-01
Chr02	irgsp1_rep	mRNA	29794965	29797238	.	-	.	ID=Os02t0717800-01;Name=Os02t0717800-01;Locus_id=Os02g0717800;Note=Similar to 60S ribosomal protein l31 (Fragment).;Transcript_evidence=AK105284 (DDBJ%2C Best hit);ORF_evidence=A6N0P2 (UniProt);NIAS_FLcDNA=001-116-E05;TENOR=Os02t0717800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	29795870	29797238	.	-	.	Parent=Os02t0717800-01
Chr02	irgsp1_rep	CDS	29795504	29795869	.	-	0	Parent=Os02t0717800-01
Chr02	irgsp1_rep	three_prime_UTR	29794965	29795503	.	-	.	Parent=Os02t0717800-01
Chr02	irgsp1_rep	mRNA	29799480	29800579	.	-	.	ID=Os02t0717900-01;Name=Os02t0717900-01;Locus_id=Os02g0717900;Note=MSF1 domain containing protein.;Transcript_evidence=AK069653 (DDBJ%2C Best hit);ORF_evidence=NP_001151821.1 (RefSeq);InterPro=PRELI/MSF1 (IPR006797);NIAS_FLcDNA=J023031J12;Expression=AK069653;TENOR=Os02t0717900-01;KEGG=Os02t0717900-01
Chr02	irgsp1_rep	five_prime_UTR	29800374	29800579	.	-	.	Parent=Os02t0717900-01
Chr02	irgsp1_rep	CDS	29799783	29800373	.	-	0	Parent=Os02t0717900-01
Chr02	irgsp1_rep	three_prime_UTR	29799480	29799782	.	-	.	Parent=Os02t0717900-01
Chr02	irgsp1_rep	mRNA	29800823	29801677	.	+	.	ID=Os02t0718000-01;Name=Os02t0718000-01;Locus_id=Os02g0718000;Note=Conserved hypothetical protein.;Transcript_evidence=AK069099 (DDBJ%2C Best hit);ORF_evidence=B8AHM6 (UniProt);NIAS_FLcDNA=J023007L05;Expression=AK069099;TENOR=Os02t0718000-01;KEGG=Os02t0718000-01
Chr02	irgsp1_rep	five_prime_UTR	29800823	29800829	.	+	.	Parent=Os02t0718000-01
Chr02	irgsp1_rep	CDS	29800830	29801435	.	+	0	Parent=Os02t0718000-01
Chr02	irgsp1_rep	three_prime_UTR	29801436	29801677	.	+	.	Parent=Os02t0718000-01
Chr02	irgsp1_rep	mRNA	29803507	29804207	.	+	.	ID=Os02t0718050-00;Name=Os02t0718050-00;Locus_id=Os02g0718050;Note=Non-protein coding transcript.;Transcript_evidence=FP100938 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0718050-00
Chr02	irgsp1_rep	exon	29803507	29804207	.	+	.	Parent=Os02t0718050-00
Chr02	irgsp1_rep	mRNA	29804949	29805545	.	-	.	ID=Os02t0718100-01;Name=Os02t0718100-01;Locus_id=Os02g0718100;CGSNL Gene Symbol=AGP22;CGSNL Gene Name=ARABINOGALACTAN PROTEIN 22;Oryzabase Gene Symbol Synonym(s)=OsAGP22;Oryzabase Gene Name Synonym(s)=Arabinogalactan protein 22;Note=Non-protein coding transcript.;Transcript_evidence=AK109216 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-156-D11;Oryzabase=11315;TENOR=Os02t0718100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	exon	29804949	29805545	.	-	.	Parent=Os02t0718100-01
Chr02	irgsp1_rep	mRNA	29813212	29813753	.	+	.	ID=Os02t0718600-01;Name=Os02t0718600-01;Locus_id=Os02g0718600;CGSNL Gene Symbol=AGP21;CGSNL Gene Name=ARABINOGALACTAN PROTEIN 21;Oryzabase Gene Symbol Synonym(s)=OsAGP21;Oryzabase Gene Name Synonym(s)=Arabinogalactan protein 21;Note=Conserved hypothetical protein.;Transcript_evidence=AK107893 (DDBJ%2C Best hit);ORF_evidence=B9F2D9 (UniProt);NIAS_FLcDNA=002-134-E10;Oryzabase=11314;TENOR=Os02t0718600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	29813212	29813213	.	+	.	Parent=Os02t0718600-01
Chr02	irgsp1_rep	CDS	29813214	29813495	.	+	0	Parent=Os02t0718600-01
Chr02	irgsp1_rep	three_prime_UTR	29813496	29813753	.	+	.	Parent=Os02t0718600-01
Chr02	irgsp1_rep	mRNA	29821936	29825120	.	+	.	ID=Os02t0718900-01;Name=Os02t0718900-01;Locus_id=Os02g0718900;CGSNL Gene Symbol=ANT;CGSNL Gene Name=ADENOSINE NUCLEOTIDE TRANSLOCATOR;Oryzabase Gene Symbol Synonym(s)=ant%2C ricANC1%2C ANC1;Oryzabase Gene Name Synonym(s)=adenine nucleotide translocator%2C "ADP%2C ATP carrier protein%2C mitochondrial precursor"%2C "ADP%2C ATP carrier protein%2C mitochondrial"%2C ADP/ATP translocase%2C ATP/ADP translocator;Note=ADP%2CATP carrier protein%2C mitochondrial precursor (ADP/ATP translocase) (Adenine nucleotide translocator) (ANT).;Transcript_evidence=AK073448 (DDBJ%2C Best hit);ORF_evidence=NP_001105434.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial inner membrane (GO:0005743),Molecular Function: transporter activity (GO:0005215),Molecular Function: binding (GO:0005488);InterPro=Mitochondrial carrier protein (IPR002067),Adenine nucleotide translocator 1 (IPR002113),Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J033045A20;Oryzabase=485;Expression=AK073448;TENOR=Os02t0718900-01;KEGG=Os02t0718900-01
Chr02	irgsp1_rep	five_prime_UTR	29821936	29822079	.	+	.	Parent=Os02t0718900-01
Chr02	irgsp1_rep	five_prime_UTR	29823288	29823307	.	+	.	Parent=Os02t0718900-01
Chr02	irgsp1_rep	CDS	29823308	29823787	.	+	0	Parent=Os02t0718900-01
Chr02	irgsp1_rep	CDS	29824066	29824437	.	+	0	Parent=Os02t0718900-01
Chr02	irgsp1_rep	CDS	29824520	29824816	.	+	0	Parent=Os02t0718900-01
Chr02	irgsp1_rep	three_prime_UTR	29824817	29825120	.	+	.	Parent=Os02t0718900-01
Chr02	irgsp1_rep	mRNA	29821975	29825120	.	+	.	ID=Os02t0718900-02;Name=Os02t0718900-02;Locus_id=Os02g0718900;CGSNL Gene Symbol=ANT;CGSNL Gene Name=ADENOSINE NUCLEOTIDE TRANSLOCATOR;Oryzabase Gene Symbol Synonym(s)=ant%2C ricANC1%2C ANC1;Oryzabase Gene Name Synonym(s)=adenine nucleotide translocator%2C "ADP%2C ATP carrier protein%2C mitochondrial precursor"%2C "ADP%2C ATP carrier protein%2C mitochondrial"%2C ADP/ATP translocase%2C ATP/ADP translocator;Note=ADP%2CATP carrier protein%2C mitochondrial precursor (ADP/ATP translocase) (Adenine nucleotide translocator) (ANT).;Transcript_evidence=AK119207 (DDBJ%2C Best hit),AK100143 (DDBJ%2C Best hit);ORF_evidence=NP_001105434.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial inner membrane (GO:0005743),Molecular Function: transporter activity (GO:0005215),Molecular Function: binding (GO:0005488);InterPro=Mitochondrial carrier protein (IPR002067),Adenine nucleotide translocator 1 (IPR002113),Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=001-041-E01,J023011P12;Oryzabase=485;TENOR=Os02t0718900-02
Chr02	irgsp1_rep	five_prime_UTR	29821975	29822079	.	+	.	Parent=Os02t0718900-02
Chr02	irgsp1_rep	five_prime_UTR	29823288	29823307	.	+	.	Parent=Os02t0718900-02
Chr02	irgsp1_rep	CDS	29823308	29823787	.	+	0	Parent=Os02t0718900-02
Chr02	irgsp1_rep	CDS	29824066	29824437	.	+	0	Parent=Os02t0718900-02
Chr02	irgsp1_rep	CDS	29824520	29824816	.	+	0	Parent=Os02t0718900-02
Chr02	irgsp1_rep	three_prime_UTR	29824817	29825120	.	+	.	Parent=Os02t0718900-02
Chr02	irgsp1_rep	mRNA	29824200	29824438	.	-	.	ID=Os02t0718950-00;Name=Os02t0718950-00;Locus_id=Os02g0718950;Note=Non-protein coding transcript.;Transcript_evidence=BT086700 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0718950-00
Chr02	irgsp1_rep	exon	29824200	29824438	.	-	.	Parent=Os02t0718950-00
Chr02	irgsp1_rep	mRNA	29827548	29830453	.	+	.	ID=Os02t0719000-01;Name=Os02t0719000-01;Locus_id=Os02g0719000;Note=Similar to Rho GDP-dissociation inhibitor 1 (Rho GDI-1) (AtRhoGDI1).;Transcript_evidence=AK073093 (DDBJ%2C Best hit);ORF_evidence=NP_001152323.1 (RefSeq);GO=Cellular Component: cytoplasm (GO:0005737),Molecular Function: Rho GDP-dissociation inhibitor activity (GO:0005094);InterPro=RHO protein GDP dissociation inhibitor (IPR000406),Immunoglobulin E-set (IPR014756);NIAS_FLcDNA=J033007K19;Expression=AK073093;TENOR=Os02t0719000-01;KEGG=Os02t0719000-01
Chr02	irgsp1_rep	five_prime_UTR	29827548	29827576	.	+	.	Parent=Os02t0719000-01
Chr02	irgsp1_rep	CDS	29827577	29828218	.	+	0	Parent=Os02t0719000-01
Chr02	irgsp1_rep	CDS	29828326	29828392	.	+	0	Parent=Os02t0719000-01
Chr02	irgsp1_rep	CDS	29829339	29829557	.	+	2	Parent=Os02t0719000-01
Chr02	irgsp1_rep	CDS	29829707	29829831	.	+	2	Parent=Os02t0719000-01
Chr02	irgsp1_rep	CDS	29829930	29830010	.	+	0	Parent=Os02t0719000-01
Chr02	irgsp1_rep	three_prime_UTR	29830011	29830453	.	+	.	Parent=Os02t0719000-01
Chr02	irgsp1_rep	mRNA	29833357	29838036	.	+	.	ID=Os02t0719100-01;Name=Os02t0719100-01;Locus_id=Os02g0719100;Note=Similar to Fimbrin/plastin-like (Fragment).;Transcript_evidence=AK069715 (DDBJ%2C Best hit);ORF_evidence=NP_001147889.1 (RefSeq);GO=Molecular Function: actin binding (GO:0003779),Molecular Function: protein binding (GO:0005515);InterPro=Actinin-type%2C actin-binding%2C conserved site (IPR001589),Calponin homology domain (IPR001715);NIAS_FLcDNA=J023031I15;Expression=AK069715;TENOR=Os02t0719100-01;KEGG=Os02t0719100-01
Chr02	irgsp1_rep	five_prime_UTR	29833357	29833411	.	+	.	Parent=Os02t0719100-01
Chr02	irgsp1_rep	five_prime_UTR	29833585	29833615	.	+	.	Parent=Os02t0719100-01
Chr02	irgsp1_rep	CDS	29833616	29833702	.	+	0	Parent=Os02t0719100-01
Chr02	irgsp1_rep	CDS	29833811	29833984	.	+	0	Parent=Os02t0719100-01
Chr02	irgsp1_rep	CDS	29834092	29834348	.	+	0	Parent=Os02t0719100-01
Chr02	irgsp1_rep	CDS	29834461	29834632	.	+	1	Parent=Os02t0719100-01
Chr02	irgsp1_rep	CDS	29835020	29835058	.	+	0	Parent=Os02t0719100-01
Chr02	irgsp1_rep	CDS	29835154	29835222	.	+	0	Parent=Os02t0719100-01
Chr02	irgsp1_rep	CDS	29835302	29835418	.	+	0	Parent=Os02t0719100-01
Chr02	irgsp1_rep	CDS	29835697	29835908	.	+	0	Parent=Os02t0719100-01
Chr02	irgsp1_rep	CDS	29836085	29836243	.	+	1	Parent=Os02t0719100-01
Chr02	irgsp1_rep	CDS	29836317	29836516	.	+	1	Parent=Os02t0719100-01
Chr02	irgsp1_rep	CDS	29836607	29836773	.	+	2	Parent=Os02t0719100-01
Chr02	irgsp1_rep	CDS	29836853	29836949	.	+	0	Parent=Os02t0719100-01
Chr02	irgsp1_rep	CDS	29837067	29837158	.	+	2	Parent=Os02t0719100-01
Chr02	irgsp1_rep	CDS	29837368	29837646	.	+	0	Parent=Os02t0719100-01
Chr02	irgsp1_rep	three_prime_UTR	29837647	29838036	.	+	.	Parent=Os02t0719100-01
Chr02	irgsp1_rep	mRNA	29839222	29839768	.	+	.	ID=Os02t0719266-00;Name=Os02t0719266-00;Locus_id=Os02g0719266;Note=Non-protein coding transcript.;Transcript_evidence=CT835310 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os02t0719266-00
Chr02	irgsp1_rep	exon	29839222	29839768	.	+	.	Parent=Os02t0719266-00
Chr02	irgsp1_rep	mRNA	29850372	29852422	.	+	.	ID=Os02t0719600-01;Name=Os02t0719600-01;Locus_id=Os02g0719600;CGSNL Gene Symbol=JMT2;CGSNL Gene Name=JASMONIC ACID CARBOXY METHYL TRANSFERASE 2;Oryzabase Gene Symbol Synonym(s)=JMT-2%2C OsJMT-2%2C OsJMT2;Oryzabase Gene Name Synonym(s)=JA carboxy methyl transferase 2%2C jasmonic acid carboxy methyl transferase 2;Note=SAM dependent carboxyl methyltransferase family protein.;Transcript_evidence=AK070415 (DDBJ%2C Best hit);ORF_evidence=B6SZU3 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=SAM dependent carboxyl methyltransferase (IPR005299);NIAS_FLcDNA=J023053E17;Oryzabase=22009;Expression=AK070415;TENOR=Os02t0719600-01;KEGG=Os02t0719600-01
Chr02	irgsp1_rep	five_prime_UTR	29850372	29850494	.	+	.	Parent=Os02t0719600-01
Chr02	irgsp1_rep	CDS	29850495	29850569	.	+	0	Parent=Os02t0719600-01
Chr02	irgsp1_rep	CDS	29850864	29851295	.	+	0	Parent=Os02t0719600-01
Chr02	irgsp1_rep	CDS	29851427	29851693	.	+	0	Parent=Os02t0719600-01
Chr02	irgsp1_rep	CDS	29851777	29852145	.	+	0	Parent=Os02t0719600-01
Chr02	irgsp1_rep	three_prime_UTR	29852146	29852422	.	+	.	Parent=Os02t0719600-01
Chr02	irgsp1_rep	mRNA	29853571	29854458	.	+	.	ID=Os02t0719700-01;Name=Os02t0719700-01;Locus_id=Os02g0719700;CGSNL Gene Symbol=BAG6;CGSNL Gene Name=BCL-2-ASSOCIATED ATHANOGENE 6;Oryzabase Gene Symbol Synonym(s)=OsBAG6;Oryzabase Gene Name Synonym(s)=Bcl-2-associated athanogene 6;Note=IQ calmodulin-binding region domain containing protein.;Transcript_evidence=AK119930 (DDBJ%2C Best hit);ORF_evidence=NP_001152525.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: chaperone binding (GO:0051087);InterPro=IQ motif%2C EF-hand binding site (IPR000048),BAG domain (IPR003103);NIAS_FLcDNA=002-184-A06;Oryzabase=11554;Expression=AK119930;TENOR=Os02t0719700-01;KEGG=Os02t0719700-01
Chr02	irgsp1_rep	five_prime_UTR	29853571	29853674	.	+	.	Parent=Os02t0719700-01
Chr02	irgsp1_rep	CDS	29853675	29854316	.	+	0	Parent=Os02t0719700-01
Chr02	irgsp1_rep	three_prime_UTR	29854317	29854458	.	+	.	Parent=Os02t0719700-01
Chr02	irgsp1_rep	mRNA	29859237	29867367	.	+	.	ID=Os02t0719800-01;Name=Os02t0719800-01;Locus_id=Os02g0719800;Note=Similar to AML1.;Transcript_evidence=AK121396 (DDBJ%2C Best hit);ORF_evidence=Q6ZI17 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023131E09;Expression=AK121396;TENOR=Os02t0719800-01;KEGG=Os02t0719800-01
Chr02	irgsp1_rep	five_prime_UTR	29859237	29859446	.	+	.	Parent=Os02t0719800-01
Chr02	irgsp1_rep	five_prime_UTR	29861262	29861284	.	+	.	Parent=Os02t0719800-01
Chr02	irgsp1_rep	CDS	29861285	29861318	.	+	0	Parent=Os02t0719800-01
Chr02	irgsp1_rep	CDS	29861416	29861568	.	+	2	Parent=Os02t0719800-01
Chr02	irgsp1_rep	CDS	29862319	29862785	.	+	2	Parent=Os02t0719800-01
Chr02	irgsp1_rep	CDS	29862984	29863142	.	+	0	Parent=Os02t0719800-01
Chr02	irgsp1_rep	CDS	29863225	29863341	.	+	0	Parent=Os02t0719800-01
Chr02	irgsp1_rep	CDS	29863473	29863624	.	+	0	Parent=Os02t0719800-01
Chr02	irgsp1_rep	CDS	29864943	29865147	.	+	1	Parent=Os02t0719800-01
Chr02	irgsp1_rep	three_prime_UTR	29865148	29866032	.	+	.	Parent=Os02t0719800-01
Chr02	irgsp1_rep	three_prime_UTR	29866111	29866195	.	+	.	Parent=Os02t0719800-01
Chr02	irgsp1_rep	three_prime_UTR	29866282	29866350	.	+	.	Parent=Os02t0719800-01
Chr02	irgsp1_rep	three_prime_UTR	29866552	29866731	.	+	.	Parent=Os02t0719800-01
Chr02	irgsp1_rep	three_prime_UTR	29866874	29867367	.	+	.	Parent=Os02t0719800-01
Chr02	irgsp1_rep	mRNA	29859289	29867367	.	+	.	ID=Os02t0719800-02;Name=Os02t0719800-02;Locus_id=Os02g0719800;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK111503 (DDBJ%2C Best hit);ORF_evidence=Q6ZI17 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),RNA recognition motif 2 (IPR007201),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013000P21;Expression=AK111503;TENOR=Os02t0719800-02;KEGG=Os02t0719800-02
Chr02	irgsp1_rep	five_prime_UTR	29859289	29859446	.	+	.	Parent=Os02t0719800-02
Chr02	irgsp1_rep	five_prime_UTR	29861262	29861284	.	+	.	Parent=Os02t0719800-02
Chr02	irgsp1_rep	CDS	29861285	29861318	.	+	0	Parent=Os02t0719800-02
Chr02	irgsp1_rep	CDS	29861416	29861568	.	+	2	Parent=Os02t0719800-02
Chr02	irgsp1_rep	CDS	29862319	29862785	.	+	2	Parent=Os02t0719800-02
Chr02	irgsp1_rep	CDS	29862984	29863142	.	+	0	Parent=Os02t0719800-02
Chr02	irgsp1_rep	CDS	29863225	29863341	.	+	0	Parent=Os02t0719800-02
Chr02	irgsp1_rep	CDS	29863473	29863624	.	+	0	Parent=Os02t0719800-02
Chr02	irgsp1_rep	CDS	29864943	29865037	.	+	1	Parent=Os02t0719800-02
Chr02	irgsp1_rep	CDS	29865126	29866032	.	+	2	Parent=Os02t0719800-02
Chr02	irgsp1_rep	CDS	29866111	29866195	.	+	1	Parent=Os02t0719800-02
Chr02	irgsp1_rep	CDS	29866282	29866350	.	+	0	Parent=Os02t0719800-02
Chr02	irgsp1_rep	CDS	29866552	29866731	.	+	0	Parent=Os02t0719800-02
Chr02	irgsp1_rep	CDS	29866874	29867002	.	+	0	Parent=Os02t0719800-02
Chr02	irgsp1_rep	three_prime_UTR	29867003	29867367	.	+	.	Parent=Os02t0719800-02
Chr02	irgsp1_rep	mRNA	29865123	29867340	.	+	.	ID=Os02t0719800-03;Name=Os02t0719800-03;Locus_id=Os02g0719800;Note=Similar to AML1.;Transcript_evidence=AK112026 (DDBJ%2C Best hit);ORF_evidence=Q6ZI17 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=RNA recognition motif 2 (IPR007201),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-036-E11;Expression=AK112026;TENOR=Os02t0719800-03;KEGG=Os02t0719800-03
Chr02	irgsp1_rep	five_prime_UTR	29865123	29865124	.	+	.	Parent=Os02t0719800-03
Chr02	irgsp1_rep	CDS	29865125	29866032	.	+	0	Parent=Os02t0719800-03
Chr02	irgsp1_rep	CDS	29866111	29866195	.	+	1	Parent=Os02t0719800-03
Chr02	irgsp1_rep	CDS	29866282	29866350	.	+	0	Parent=Os02t0719800-03
Chr02	irgsp1_rep	CDS	29866552	29866731	.	+	0	Parent=Os02t0719800-03
Chr02	irgsp1_rep	CDS	29866874	29867002	.	+	0	Parent=Os02t0719800-03
Chr02	irgsp1_rep	three_prime_UTR	29867003	29867340	.	+	.	Parent=Os02t0719800-03
Chr02	irgsp1_rep	mRNA	29873280	29875295	.	+	.	ID=Os02t0720000-01;Name=Os02t0720000-01;Locus_id=Os02g0720000;Note=Conserved hypothetical protein.;Transcript_evidence=AK108806 (DDBJ%2C Best hit);ORF_evidence=Q6ZI16 (UniProt);NIAS_FLcDNA=002-151-D02;Expression=AK108806;TENOR=Os02t0720000-01;KEGG=Os02t0720000-01
Chr02	irgsp1_rep	CDS	29873280	29874305	.	+	0	Parent=Os02t0720000-01
Chr02	irgsp1_rep	three_prime_UTR	29874306	29874343	.	+	.	Parent=Os02t0720000-01
Chr02	irgsp1_rep	three_prime_UTR	29874783	29874913	.	+	.	Parent=Os02t0720000-01
Chr02	irgsp1_rep	three_prime_UTR	29875084	29875295	.	+	.	Parent=Os02t0720000-01
Chr02	irgsp1_rep	mRNA	29875600	29876705	.	-	.	ID=Os02t0720100-01;Name=Os02t0720100-01;Locus_id=Os02g0720100;CGSNL Gene Symbol=ENODL8;CGSNL Gene Name=EARLY NODULIN LIKE PROTEIN 8;Oryzabase Gene Symbol Synonym(s)=OsENODL8;Oryzabase Gene Name Synonym(s)=early nodulin-like protein 8;Note=Cupredoxin domain containing protein.;Transcript_evidence=AK063724 (DDBJ%2C Best hit);ORF_evidence=A3AAS9 (UniProt);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);NIAS_FLcDNA=001-120-D09;Oryzabase=9733;Expression=AK063724;TENOR=Os02t0720100-01;KEGG=Os02t0720100-01
Chr02	irgsp1_rep	five_prime_UTR	29876658	29876705	.	-	.	Parent=Os02t0720100-01
Chr02	irgsp1_rep	CDS	29876363	29876657	.	-	0	Parent=Os02t0720100-01
Chr02	irgsp1_rep	CDS	29875928	29876289	.	-	2	Parent=Os02t0720100-01
Chr02	irgsp1_rep	three_prime_UTR	29875600	29875927	.	-	.	Parent=Os02t0720100-01
Chr02	irgsp1_rep	mRNA	29877249	29881452	.	+	.	ID=Os02t0720200-01;Name=Os02t0720200-01;Locus_id=Os02g0720200;Note=Similar to 65kD microtubule associated protein.;Transcript_evidence=AK121803 (DDBJ%2C Best hit),AK105451 (DDBJ%2C Best hit);ORF_evidence=NP_001151771.1 (RefSeq);InterPro=Microtubule-associated protein%2C MAP65/ASE1-type (IPR007145);NIAS_FLcDNA=J033097J24,001-125-C02;Expression=AK121803;TENOR=Os02t0720200-01;KEGG=Os02t0720200-01
Chr02	irgsp1_rep	five_prime_UTR	29877249	29877425	.	+	.	Parent=Os02t0720200-01
Chr02	irgsp1_rep	five_prime_UTR	29878027	29878154	.	+	.	Parent=Os02t0720200-01
Chr02	irgsp1_rep	CDS	29878155	29878208	.	+	0	Parent=Os02t0720200-01
Chr02	irgsp1_rep	CDS	29878325	29878528	.	+	0	Parent=Os02t0720200-01
Chr02	irgsp1_rep	CDS	29878958	29879215	.	+	0	Parent=Os02t0720200-01
Chr02	irgsp1_rep	CDS	29879328	29879543	.	+	0	Parent=Os02t0720200-01
Chr02	irgsp1_rep	CDS	29879637	29879792	.	+	0	Parent=Os02t0720200-01
Chr02	irgsp1_rep	CDS	29879903	29880214	.	+	0	Parent=Os02t0720200-01
Chr02	irgsp1_rep	CDS	29880302	29880389	.	+	0	Parent=Os02t0720200-01
Chr02	irgsp1_rep	CDS	29880562	29880710	.	+	2	Parent=Os02t0720200-01
Chr02	irgsp1_rep	CDS	29880897	29881229	.	+	0	Parent=Os02t0720200-01
Chr02	irgsp1_rep	three_prime_UTR	29881230	29881452	.	+	.	Parent=Os02t0720200-01
Chr02	irgsp1_rep	mRNA	29878316	29880217	.	-	.	ID=Os02t0720250-00;Name=Os02t0720250-00;Locus_id=Os02g0720250;Note=Non-protein coding transcript.;Transcript_evidence=tplb0026b06 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os02t0720250-00
Chr02	irgsp1_rep	exon	29878969	29880217	.	-	.	Parent=Os02t0720250-00
Chr02	irgsp1_rep	exon	29878316	29878546	.	-	.	Parent=Os02t0720250-00
Chr02	irgsp1_rep	mRNA	29882068	29885240	.	+	.	ID=Os02t0720300-01;Name=Os02t0720300-01;Locus_id=Os02g0720300;Oryzabase Gene Symbol Synonym(s)=OsPP38;Oryzabase Gene Name Synonym(s)=Protein phosphatase 38;Note=Protein-tyrosine phosphatase%2C dual specificity domain containing protein.;Transcript_evidence=AK102281 (DDBJ%2C Best hit);ORF_evidence=NP_001151746.1 (RefSeq);GO=Biological Process: protein dephosphorylation (GO:0006470),Biological Process: dephosphorylation (GO:0016311),Molecular Function: protein tyrosine phosphatase activity (GO:0004725),Molecular Function: protein tyrosine/serine/threonine phosphatase activity (GO:0008138),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: phosphatase activity (GO:0016791),Molecular Function: metal ion binding (GO:0046872);InterPro=Dual specificity phosphatase%2C catalytic domain (IPR000340),Protein-tyrosine/Dual-specificity phosphatase (IPR000387),Rubredoxin-type Fe(Cys)4 protein (IPR004039),Protein-tyrosine phosphatase%2C active site (IPR016130),Dual specificity phosphatase%2C subgroup%2C catalytic domain (IPR020422);NIAS_FLcDNA=J033089F02;Oryzabase=18632;Expression=AK102281;TENOR=Os02t0720300-01;KEGG=Os02t0720300-01 (EC:3.1.3.16%2C EC:3.1.3.48)
Chr02	irgsp1_rep	five_prime_UTR	29882068	29882220	.	+	.	Parent=Os02t0720300-01
Chr02	irgsp1_rep	CDS	29882221	29882460	.	+	0	Parent=Os02t0720300-01
Chr02	irgsp1_rep	CDS	29883731	29883830	.	+	0	Parent=Os02t0720300-01
Chr02	irgsp1_rep	CDS	29884085	29884142	.	+	2	Parent=Os02t0720300-01
Chr02	irgsp1_rep	CDS	29884227	29884333	.	+	1	Parent=Os02t0720300-01
Chr02	irgsp1_rep	CDS	29884686	29884987	.	+	2	Parent=Os02t0720300-01
Chr02	irgsp1_rep	three_prime_UTR	29884988	29885240	.	+	.	Parent=Os02t0720300-01
Chr02	irgsp1_rep	mRNA	29886216	29888140	.	+	.	ID=Os02t0720400-00;Name=Os02t0720400-00;Locus_id=Os02g0720400;Note=Protein of unknown function DUF506%2C plant domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001047952.2 (RefSeq);InterPro=Protein of unknown function DUF506%2C plant (IPR006502);TENOR=Os02t0720400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	29886216	29887079	.	+	0	Parent=Os02t0720400-00
Chr02	irgsp1_rep	CDS	29888009	29888140	.	+	0	Parent=Os02t0720400-00
Chr02	irgsp1_rep	mRNA	29889553	29890655	.	-	.	ID=Os02t0720450-00;Name=Os02t0720450-00;Locus_id=Os02g0720450;Note=Hypothetical protein.;Transcript_evidence=EU947645 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0720450-00
Chr02	irgsp1_rep	CDS	29890242	29890655	.	-	0	Parent=Os02t0720450-00
Chr02	irgsp1_rep	three_prime_UTR	29889553	29890241	.	-	.	Parent=Os02t0720450-00
Chr02	irgsp1_rep	mRNA	29890269	29891334	.	+	.	ID=Os02t0720500-01;Name=Os02t0720500-01;Locus_id=Os02g0720500;Note=Peptidase A1 domain containing protein.;Transcript_evidence=AK108932 (DDBJ%2C Best hit);ORF_evidence=B6SL29 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=002-153-A08;Expression=AK108932;TENOR=Os02t0720500-01;KEGG=Os02t0720500-01
Chr02	irgsp1_rep	CDS	29890269	29890787	.	+	0	Parent=Os02t0720500-01
Chr02	irgsp1_rep	three_prime_UTR	29890788	29891334	.	+	.	Parent=Os02t0720500-01
Chr02	irgsp1_rep	mRNA	29892488	29894313	.	-	.	ID=Os02t0720600-01;Name=Os02t0720600-01;Locus_id=Os02g0720600;Note=Peptidase A1 domain containing protein.;Transcript_evidence=AK101967 (DDBJ%2C Best hit),AK105989 (DDBJ%2C Best hit);ORF_evidence=NP_001150335.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J033076I21,001-205-G11;TENOR=Os02t0720600-01
Chr02	irgsp1_rep	five_prime_UTR	29894270	29894313	.	-	.	Parent=Os02t0720600-01
Chr02	irgsp1_rep	CDS	29894140	29894269	.	-	0	Parent=Os02t0720600-01
Chr02	irgsp1_rep	CDS	29892787	29894048	.	-	2	Parent=Os02t0720600-01
Chr02	irgsp1_rep	three_prime_UTR	29892488	29892786	.	-	.	Parent=Os02t0720600-01
Chr02	irgsp1_rep	mRNA	29899297	29904080	.	-	.	ID=Os02t0720700-01;Name=Os02t0720700-01;Locus_id=Os02g0720700;CGSNL Gene Symbol=CBSCLC9;CGSNL Gene Name=CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 9;Oryzabase Gene Symbol Synonym(s)=OsCBSCLC9%2C OsCBSCLC9a%2C OsCBSCLC9b;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSCLC9%2C CBS domain containing protein OsCBSCLC9%2C CBS domain containing protein 9;Note=Similar to Chloride channel protein CLC-f (AtCLC-f). Splice isoform 2.;Transcript_evidence=AK101764 (DDBJ%2C Best hit);ORF_evidence=XP_002894515.1 (RefSeq);GO=Biological Process: chloride transport (GO:0006821),Biological Process: metabolic process (GO:0008152),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ion channel activity (GO:0005216),Molecular Function: voltage-gated chloride channel activity (GO:0005247),Molecular Function: protein binding (GO:0005515);InterPro=Cystathionine beta-synthase%2C core (IPR000644),Chloride channel%2C voltage gated (IPR001807),Aldolase-type TIM barrel (IPR013785),Chloride channel%2C core (IPR014743);NIAS_FLcDNA=J033064D18;Oryzabase=10338;Expression=AK101764;TENOR=Os02t0720700-01;KEGG=Os02t0720700-01
Chr02	irgsp1_rep	five_prime_UTR	29904026	29904080	.	-	.	Parent=Os02t0720700-01
Chr02	irgsp1_rep	CDS	29903582	29904025	.	-	0	Parent=Os02t0720700-01
Chr02	irgsp1_rep	CDS	29902744	29903146	.	-	0	Parent=Os02t0720700-01
Chr02	irgsp1_rep	CDS	29902253	29902447	.	-	2	Parent=Os02t0720700-01
Chr02	irgsp1_rep	CDS	29901432	29901886	.	-	2	Parent=Os02t0720700-01
Chr02	irgsp1_rep	CDS	29901227	29901331	.	-	0	Parent=Os02t0720700-01
Chr02	irgsp1_rep	CDS	29900839	29901066	.	-	0	Parent=Os02t0720700-01
Chr02	irgsp1_rep	CDS	29900498	29900713	.	-	0	Parent=Os02t0720700-01
Chr02	irgsp1_rep	CDS	29900012	29900244	.	-	0	Parent=Os02t0720700-01
Chr02	irgsp1_rep	CDS	29899796	29899868	.	-	1	Parent=Os02t0720700-01
Chr02	irgsp1_rep	three_prime_UTR	29899297	29899795	.	-	.	Parent=Os02t0720700-01
Chr02	irgsp1_rep	mRNA	29911311	29916314	.	+	.	ID=Os02t0720900-01;Name=Os02t0720900-01;Locus_id=Os02g0720900;Note=Peptidase A1 domain containing protein.;Transcript_evidence=AK099781 (DDBJ%2C Best hit),AK061307 (DDBJ%2C Best hit),AK061628 (DDBJ%2C Best hit);ORF_evidence=B6TP02 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J013095M09,006-302-A02,001-035-D10;TENOR=Os02t0720900-01
Chr02	irgsp1_rep	five_prime_UTR	29911311	29911366	.	+	.	Parent=Os02t0720900-01
Chr02	irgsp1_rep	CDS	29911367	29911466	.	+	0	Parent=Os02t0720900-01
Chr02	irgsp1_rep	CDS	29914451	29915727	.	+	2	Parent=Os02t0720900-01
Chr02	irgsp1_rep	three_prime_UTR	29915728	29916314	.	+	.	Parent=Os02t0720900-01
Chr02	irgsp1_rep	mRNA	29911311	29913289	.	+	.	ID=Os02t0720900-02;Name=Os02t0720900-02;Locus_id=Os02g0720900;Note=Hypothetical protein.;Transcript_evidence=AK121603 (DDBJ%2C Best hit),AK069691 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033041D21,J023026H24;TENOR=Os02t0720900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	29911311	29912606	.	+	.	Parent=Os02t0720900-02
Chr02	irgsp1_rep	CDS	29912607	29912879	.	+	0	Parent=Os02t0720900-02
Chr02	irgsp1_rep	three_prime_UTR	29912880	29913289	.	+	.	Parent=Os02t0720900-02
Chr02	irgsp1_rep	mRNA	29913753	29916213	.	+	.	ID=Os02t0720900-04;Name=Os02t0720900-04;Locus_id=Os02g0720900;Note=Similar to Aspartic proteinase nepenthesin-1.;Transcript_evidence=AK072228 (DDBJ%2C Best hit);ORF_evidence=B6TP02 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J013169I21;Expression=AK072228;TENOR=Os02t0720900-04;KEGG=Os02t0720900-04
Chr02	irgsp1_rep	five_prime_UTR	29913753	29914425	.	+	.	Parent=Os02t0720900-04
Chr02	irgsp1_rep	CDS	29914426	29915727	.	+	0	Parent=Os02t0720900-04
Chr02	irgsp1_rep	three_prime_UTR	29915728	29916213	.	+	.	Parent=Os02t0720900-04
Chr02	irgsp1_rep	mRNA	29914311	29915764	.	-	.	ID=Os02t0721000-01;Name=Os02t0721000-01;Locus_id=Os02g0721000;CGSNL Gene Symbol=ASPG1;CGSNL Gene Name=ASPARTIC PROTEASE IN GUARD CELL 1;Oryzabase Gene Symbol Synonym(s)=OsASPG1;Oryzabase Gene Name Synonym(s)=aspartic protease in guard cell 1;Note=Hypothetical protein.;Transcript_evidence=AK108039 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-137-C12;Oryzabase=21532;TENOR=Os02t0721000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	29915764	29915764	.	-	.	Parent=Os02t0721000-01
Chr02	irgsp1_rep	CDS	29915194	29915763	.	-	0	Parent=Os02t0721000-01
Chr02	irgsp1_rep	three_prime_UTR	29914311	29915193	.	-	.	Parent=Os02t0721000-01
Chr02	irgsp1_rep	mRNA	29919262	29920338	.	-	.	ID=Os02t0721100-01;Name=Os02t0721100-01;Locus_id=Os02g0721100;Note=Similar to E2 ubiquitin-conjugating enzyme UbcH5B (Fragment).;Transcript_evidence=AK108167 (DDBJ%2C Best hit);ORF_evidence=A2X916 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135);NIAS_FLcDNA=002-139-H07;Expression=AK108167;TENOR=Os02t0721100-01;KEGG=Os02t0721100-01 (EC:6.3.2.19)
Chr02	irgsp1_rep	five_prime_UTR	29920298	29920338	.	-	.	Parent=Os02t0721100-01
Chr02	irgsp1_rep	CDS	29920016	29920297	.	-	0	Parent=Os02t0721100-01
Chr02	irgsp1_rep	CDS	29919480	29919902	.	-	0	Parent=Os02t0721100-01
Chr02	irgsp1_rep	three_prime_UTR	29919262	29919479	.	-	.	Parent=Os02t0721100-01
Chr02	irgsp1_rep	mRNA	29922428	29923177	.	-	.	ID=Os02t0721200-00;Name=Os02t0721200-00;Locus_id=Os02g0721200;Note=Ubiquitin-conjugating enzyme%2C E2 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001047959.2 (RefSeq);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135);TENOR=Os02t0721200-00
Chr02	irgsp1_rep	CDS	29922428	29923177	.	-	0	Parent=Os02t0721200-00
Chr02	irgsp1_rep	mRNA	29934664	29941648	.	-	.	ID=Os02t0721600-01;Name=Os02t0721600-01;Locus_id=Os02g0721600;RAP-DB Gene Symbol Synonym(s)=SRWD2%2C SRWD2%2C OsWD40-52;RAP-DB Gene Name Synonym(s)=SALT RESPONSIVE WD40 PROTEIN 2%2C salt responsive WD40 protein 2;CGSNL Gene Symbol=SRWD2;CGSNL Gene Name=SALT RESPONSIVE WD40 PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=SRWD2%2C OsWD40-52;Oryzabase Gene Name Synonym(s)=salt responsive WD40 protein 2;Note=WD40 subfamily protein%2C Salt stress;Transcript_evidence=AK111506 (Genbank);ORF_evidence=Q6Z664 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J013001D05;Manual Curation=June 9%2C 2009;Literature_PMID=18755256;Oryzabase=8211;TENOR=Os02t0721600-01
Chr02	irgsp1_rep	five_prime_UTR	29941368	29941648	.	-	.	Parent=Os02t0721600-01
Chr02	irgsp1_rep	five_prime_UTR	29940779	29940809	.	-	.	Parent=Os02t0721600-01
Chr02	irgsp1_rep	CDS	29940638	29940778	.	-	0	Parent=Os02t0721600-01
Chr02	irgsp1_rep	CDS	29939877	29940044	.	-	0	Parent=Os02t0721600-01
Chr02	irgsp1_rep	CDS	29939719	29939805	.	-	0	Parent=Os02t0721600-01
Chr02	irgsp1_rep	CDS	29938850	29938984	.	-	0	Parent=Os02t0721600-01
Chr02	irgsp1_rep	CDS	29938641	29938751	.	-	0	Parent=Os02t0721600-01
Chr02	irgsp1_rep	CDS	29935975	29936066	.	-	0	Parent=Os02t0721600-01
Chr02	irgsp1_rep	CDS	29935787	29935892	.	-	1	Parent=Os02t0721600-01
Chr02	irgsp1_rep	CDS	29935359	29935445	.	-	0	Parent=Os02t0721600-01
Chr02	irgsp1_rep	CDS	29934816	29935229	.	-	0	Parent=Os02t0721600-01
Chr02	irgsp1_rep	three_prime_UTR	29934664	29934815	.	-	.	Parent=Os02t0721600-01
Chr02	irgsp1_rep	mRNA	29934470	29938955	.	-	.	ID=Os02t0721600-02;Name=Os02t0721600-02;Locus_id=Os02g0721600;CGSNL Gene Symbol=SRWD2;CGSNL Gene Name=SALT RESPONSIVE WD40 PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=SRWD2%2C OsWD40-52;Oryzabase Gene Name Synonym(s)=salt responsive WD40 protein 2;Note=Similar to WD-repeat protein-like.;Transcript_evidence=AK112042 (DDBJ%2C Best hit);ORF_evidence=B6TZ87 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=001-045-D04;Oryzabase=8211;Expression=AK112042;TENOR=Os02t0721600-02;KEGG=Os02t0721600-02
Chr02	irgsp1_rep	five_prime_UTR	29938955	29938955	.	-	.	Parent=Os02t0721600-02
Chr02	irgsp1_rep	CDS	29938850	29938954	.	-	0	Parent=Os02t0721600-02
Chr02	irgsp1_rep	CDS	29938641	29938751	.	-	0	Parent=Os02t0721600-02
Chr02	irgsp1_rep	CDS	29935975	29936066	.	-	0	Parent=Os02t0721600-02
Chr02	irgsp1_rep	CDS	29935787	29935892	.	-	1	Parent=Os02t0721600-02
Chr02	irgsp1_rep	CDS	29935359	29935445	.	-	0	Parent=Os02t0721600-02
Chr02	irgsp1_rep	CDS	29934816	29935229	.	-	0	Parent=Os02t0721600-02
Chr02	irgsp1_rep	three_prime_UTR	29934470	29934815	.	-	.	Parent=Os02t0721600-02
Chr02	irgsp1_rep	mRNA	29934663	29938731	.	-	.	ID=Os02t0721600-03;Name=Os02t0721600-03;Locus_id=Os02g0721600;CGSNL Gene Symbol=SRWD2;CGSNL Gene Name=SALT RESPONSIVE WD40 PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=SRWD2%2C OsWD40-52;Oryzabase Gene Name Synonym(s)=salt responsive WD40 protein 2;Note=Similar to WD-repeat protein-like.;Transcript_evidence=AK111973 (DDBJ%2C Best hit);ORF_evidence=B6TZ87 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=006-312-A04;Oryzabase=8211;Expression=AK111973;TENOR=Os02t0721600-03;KEGG=Os02t0721600-03
Chr02	irgsp1_rep	five_prime_UTR	29938731	29938731	.	-	.	Parent=Os02t0721600-03
Chr02	irgsp1_rep	CDS	29938641	29938730	.	-	0	Parent=Os02t0721600-03
Chr02	irgsp1_rep	CDS	29935975	29936066	.	-	0	Parent=Os02t0721600-03
Chr02	irgsp1_rep	CDS	29935787	29935892	.	-	1	Parent=Os02t0721600-03
Chr02	irgsp1_rep	CDS	29935359	29935445	.	-	0	Parent=Os02t0721600-03
Chr02	irgsp1_rep	CDS	29934816	29935229	.	-	0	Parent=Os02t0721600-03
Chr02	irgsp1_rep	three_prime_UTR	29934663	29934815	.	-	.	Parent=Os02t0721600-03
Chr02	irgsp1_rep	mRNA	29934488	29937021	.	-	.	ID=Os02t0721600-04;Name=Os02t0721600-04;Locus_id=Os02g0721600;CGSNL Gene Symbol=SRWD2;CGSNL Gene Name=SALT RESPONSIVE WD40 PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=SRWD2%2C OsWD40-52;Oryzabase Gene Name Synonym(s)=salt responsive WD40 protein 2;Note=Similar to WD-repeat protein-like.;Transcript_evidence=AK111669 (DDBJ%2C Best hit);ORF_evidence=B6TZ87 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J013154D17;Oryzabase=8211;Expression=AK111669;TENOR=Os02t0721600-04;KEGG=Os02t0721600-04
Chr02	irgsp1_rep	five_prime_UTR	29936073	29937021	.	-	.	Parent=Os02t0721600-04
Chr02	irgsp1_rep	CDS	29935975	29936072	.	-	0	Parent=Os02t0721600-04
Chr02	irgsp1_rep	CDS	29935787	29935892	.	-	1	Parent=Os02t0721600-04
Chr02	irgsp1_rep	CDS	29935359	29935445	.	-	0	Parent=Os02t0721600-04
Chr02	irgsp1_rep	CDS	29934816	29935229	.	-	0	Parent=Os02t0721600-04
Chr02	irgsp1_rep	three_prime_UTR	29934488	29934815	.	-	.	Parent=Os02t0721600-04
Chr02	irgsp1_rep	mRNA	29934664	29941604	.	-	.	ID=Os02t0721600-05;Name=Os02t0721600-05;Locus_id=Os02g0721600;CGSNL Gene Symbol=SRWD2;CGSNL Gene Name=SALT RESPONSIVE WD40 PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=SRWD2%2C OsWD40-52;Oryzabase Gene Name Synonym(s)=salt responsive WD40 protein 2;Note=Similar to WD-repeat protein-like.;Transcript_evidence=AK098883 (DDBJ%2C Best hit);ORF_evidence=B6TZ87 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J013001H19;Oryzabase=8211;TENOR=Os02t0721600-05
Chr02	irgsp1_rep	five_prime_UTR	29941368	29941604	.	-	.	Parent=Os02t0721600-05
Chr02	irgsp1_rep	five_prime_UTR	29940779	29940809	.	-	.	Parent=Os02t0721600-05
Chr02	irgsp1_rep	CDS	29940638	29940778	.	-	0	Parent=Os02t0721600-05
Chr02	irgsp1_rep	CDS	29939877	29940044	.	-	0	Parent=Os02t0721600-05
Chr02	irgsp1_rep	CDS	29939719	29939805	.	-	0	Parent=Os02t0721600-05
Chr02	irgsp1_rep	CDS	29938850	29938984	.	-	0	Parent=Os02t0721600-05
Chr02	irgsp1_rep	CDS	29938641	29938751	.	-	0	Parent=Os02t0721600-05
Chr02	irgsp1_rep	CDS	29935975	29936066	.	-	0	Parent=Os02t0721600-05
Chr02	irgsp1_rep	CDS	29935787	29935892	.	-	1	Parent=Os02t0721600-05
Chr02	irgsp1_rep	CDS	29935359	29935445	.	-	0	Parent=Os02t0721600-05
Chr02	irgsp1_rep	CDS	29934816	29935229	.	-	0	Parent=Os02t0721600-05
Chr02	irgsp1_rep	three_prime_UTR	29934664	29934815	.	-	.	Parent=Os02t0721600-05
Chr02	irgsp1_rep	mRNA	29947243	29949558	.	-	.	ID=Os02t0721700-01;Name=Os02t0721700-01;Locus_id=Os02g0721700;Note=Similar to Gpi-anchored protein (Fragment).;Transcript_evidence=AK061514 (DDBJ%2C Best hit);ORF_evidence=A6N098 (UniProt);NIAS_FLcDNA=006-309-H03;Expression=AK061514;TENOR=Os02t0721700-01;KEGG=Os02t0721700-01
Chr02	irgsp1_rep	five_prime_UTR	29949283	29949558	.	-	.	Parent=Os02t0721700-01
Chr02	irgsp1_rep	CDS	29949198	29949282	.	-	0	Parent=Os02t0721700-01
Chr02	irgsp1_rep	CDS	29949040	29949099	.	-	2	Parent=Os02t0721700-01
Chr02	irgsp1_rep	CDS	29947475	29947833	.	-	2	Parent=Os02t0721700-01
Chr02	irgsp1_rep	three_prime_UTR	29947243	29947474	.	-	.	Parent=Os02t0721700-01
Chr02	irgsp1_rep	mRNA	29947241	29949496	.	-	.	ID=Os02t0721700-02;Name=Os02t0721700-02;Locus_id=Os02g0721700;Note=Similar to Gpi-anchored protein (Fragment).;Transcript_evidence=AK104061 (DDBJ%2C Best hit);ORF_evidence=A6N098 (UniProt);NIAS_FLcDNA=001-025-A04;TENOR=Os02t0721700-02
Chr02	irgsp1_rep	five_prime_UTR	29949283	29949496	.	-	.	Parent=Os02t0721700-02
Chr02	irgsp1_rep	CDS	29949198	29949282	.	-	0	Parent=Os02t0721700-02
Chr02	irgsp1_rep	CDS	29949040	29949099	.	-	2	Parent=Os02t0721700-02
Chr02	irgsp1_rep	CDS	29947475	29947833	.	-	2	Parent=Os02t0721700-02
Chr02	irgsp1_rep	three_prime_UTR	29947241	29947474	.	-	.	Parent=Os02t0721700-02
Chr02	irgsp1_rep	mRNA	29950718	29956811	.	-	.	ID=Os02t0721800-01;Name=Os02t0721800-01;Locus_id=Os02g0721800;Oryzabase Gene Symbol Synonym(s)=OsSNDP8%2C SNDP8;Oryzabase Gene Name Synonym(s)=Sec14-nodulin domain-containing protein 8%2C Sec14-nodulin domain protein 8;Note=Similar to Phosphatidylinositol transfer-like protein IV.;Transcript_evidence=AK100043 (DDBJ%2C Best hit);ORF_evidence=B6U127 (UniProt);InterPro=Cellular retinaldehyde-binding/triple function%2C C-terminal (IPR001251),Cellular retinaldehyde-binding/triple function%2C N-terminal (IPR008273),Phosphatidylinositol transfer protein-like%2C N-terminal (IPR011074);NIAS_FLcDNA=J013152L11;Oryzabase=12292;Expression=AK100043;TENOR=Os02t0721800-01;KEGG=Os02t0721800-01
Chr02	irgsp1_rep	five_prime_UTR	29956561	29956811	.	-	.	Parent=Os02t0721800-01
Chr02	irgsp1_rep	five_prime_UTR	29956159	29956257	.	-	.	Parent=Os02t0721800-01
Chr02	irgsp1_rep	CDS	29956152	29956158	.	-	0	Parent=Os02t0721800-01
Chr02	irgsp1_rep	CDS	29955743	29956058	.	-	2	Parent=Os02t0721800-01
Chr02	irgsp1_rep	CDS	29955552	29955651	.	-	1	Parent=Os02t0721800-01
Chr02	irgsp1_rep	CDS	29955131	29955397	.	-	0	Parent=Os02t0721800-01
Chr02	irgsp1_rep	CDS	29954334	29954411	.	-	0	Parent=Os02t0721800-01
Chr02	irgsp1_rep	CDS	29954159	29954260	.	-	0	Parent=Os02t0721800-01
Chr02	irgsp1_rep	CDS	29954029	29954078	.	-	0	Parent=Os02t0721800-01
Chr02	irgsp1_rep	CDS	29953837	29953936	.	-	1	Parent=Os02t0721800-01
Chr02	irgsp1_rep	CDS	29953625	29953723	.	-	0	Parent=Os02t0721800-01
Chr02	irgsp1_rep	CDS	29953413	29953532	.	-	0	Parent=Os02t0721800-01
Chr02	irgsp1_rep	CDS	29953079	29953220	.	-	0	Parent=Os02t0721800-01
Chr02	irgsp1_rep	CDS	29952590	29952951	.	-	2	Parent=Os02t0721800-01
Chr02	irgsp1_rep	CDS	29951797	29951871	.	-	0	Parent=Os02t0721800-01
Chr02	irgsp1_rep	CDS	29951281	29951301	.	-	0	Parent=Os02t0721800-01
Chr02	irgsp1_rep	three_prime_UTR	29950718	29951280	.	-	.	Parent=Os02t0721800-01
Chr02	irgsp1_rep	mRNA	29953414	29956021	.	+	.	ID=Os02t0721901-00;Name=Os02t0721901-00;Locus_id=Os02g0721901;Note=Hypothetical protein.;Transcript_evidence=tplb0036h18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0721901-00
Chr02	irgsp1_rep	five_prime_UTR	29953414	29953558	.	+	.	Parent=Os02t0721901-00
Chr02	irgsp1_rep	five_prime_UTR	29953763	29953948	.	+	.	Parent=Os02t0721901-00
Chr02	irgsp1_rep	five_prime_UTR	29954042	29954090	.	+	.	Parent=Os02t0721901-00
Chr02	irgsp1_rep	five_prime_UTR	29954170	29954253	.	+	.	Parent=Os02t0721901-00
Chr02	irgsp1_rep	five_prime_UTR	29954324	29954499	.	+	.	Parent=Os02t0721901-00
Chr02	irgsp1_rep	five_prime_UTR	29955076	29955412	.	+	.	Parent=Os02t0721901-00
Chr02	irgsp1_rep	five_prime_UTR	29955569	29955672	.	+	.	Parent=Os02t0721901-00
Chr02	irgsp1_rep	CDS	29955673	29955683	.	+	0	Parent=Os02t0721901-00
Chr02	irgsp1_rep	CDS	29955777	29956021	.	+	1	Parent=Os02t0721901-00
Chr02	irgsp1_rep	mRNA	29960114	29978603	.	-	.	ID=Os02t0722001-00;Name=Os02t0722001-00;Locus_id=Os02g0722001;Note=Similar to Tyrosyl-tRNA synthetase.;Transcript_evidence=AK374496 (DDBJ);ORF_evidence=B6TBW5 (UniProt);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: ATP binding (GO:0005524);InterPro=Aminoacyl-tRNA synthetase%2C class Ic (IPR002305),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);TENOR=Os02t0722001-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	29978421	29978603	.	-	0	Parent=Os02t0722001-00
Chr02	irgsp1_rep	CDS	29977974	29978257	.	-	0	Parent=Os02t0722001-00
Chr02	irgsp1_rep	CDS	29977750	29977846	.	-	1	Parent=Os02t0722001-00
Chr02	irgsp1_rep	CDS	29962458	29962563	.	-	0	Parent=Os02t0722001-00
Chr02	irgsp1_rep	CDS	29962238	29962320	.	-	2	Parent=Os02t0722001-00
Chr02	irgsp1_rep	CDS	29961020	29961165	.	-	0	Parent=Os02t0722001-00
Chr02	irgsp1_rep	CDS	29960674	29960779	.	-	1	Parent=Os02t0722001-00
Chr02	irgsp1_rep	CDS	29960114	29960197	.	-	0	Parent=Os02t0722001-00
Chr02	irgsp1_rep	mRNA	29984559	29987481	.	+	.	ID=Os02t0722300-01;Name=Os02t0722300-01;Locus_id=Os02g0722300;Note=Nonaspanin (TM9SF) family protein.;Transcript_evidence=AK064958 (DDBJ%2C Best hit);ORF_evidence=NP_001151523.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Nonaspanin (TM9SF) (IPR004240);NIAS_FLcDNA=J013001A11;Expression=AK064958;TENOR=Os02t0722300-01;KEGG=Os02t0722300-01
Chr02	irgsp1_rep	five_prime_UTR	29984559	29984707	.	+	.	Parent=Os02t0722300-01
Chr02	irgsp1_rep	five_prime_UTR	29985291	29985323	.	+	.	Parent=Os02t0722300-01
Chr02	irgsp1_rep	CDS	29985324	29987285	.	+	0	Parent=Os02t0722300-01
Chr02	irgsp1_rep	three_prime_UTR	29987286	29987481	.	+	.	Parent=Os02t0722300-01
Chr02	irgsp1_rep	mRNA	29985287	29987543	.	-	.	ID=Os02t0722350-00;Name=Os02t0722350-00;Locus_id=Os02g0722350;Note=Hypothetical protein.;Transcript_evidence=tplb0041i20 (Wheat FLcDNA);ORF_evidence=GeneMark;TENOR=Os02t0722350-00
Chr02	irgsp1_rep	five_prime_UTR	29986814	29987543	.	-	.	Parent=Os02t0722350-00
Chr02	irgsp1_rep	CDS	29986511	29986813	.	-	0	Parent=Os02t0722350-00
Chr02	irgsp1_rep	three_prime_UTR	29985287	29986510	.	-	.	Parent=Os02t0722350-00
Chr02	irgsp1_rep	mRNA	29991951	29998068	.	+	.	ID=Os02t0722400-01;Name=Os02t0722400-01;Locus_id=Os02g0722400;CGSNL Gene Symbol=AAP7C;CGSNL Gene Name=AMINO ACID PERMEASE 7C;Oryzabase Gene Symbol Synonym(s)=OsAAP7C%2C OsAAP10%2C AAP10;Oryzabase Gene Name Synonym(s)=amino acid permease 7C%2C amino acid permease 10%2C amino acid/auxin permease 10;Note=Similar to AAP7.;Transcript_evidence=AK070030 (DDBJ%2C Best hit);ORF_evidence=NP_001152196.1 (RefSeq);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=J023037N07;Oryzabase=18494;TENOR=Os02t0722400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	29991951	29991952	.	+	.	Parent=Os02t0722400-01
Chr02	irgsp1_rep	CDS	29991953	29991992	.	+	0	Parent=Os02t0722400-01
Chr02	irgsp1_rep	CDS	29993420	29993656	.	+	2	Parent=Os02t0722400-01
Chr02	irgsp1_rep	CDS	29994267	29994358	.	+	2	Parent=Os02t0722400-01
Chr02	irgsp1_rep	CDS	29995937	29996156	.	+	0	Parent=Os02t0722400-01
Chr02	irgsp1_rep	CDS	29996677	29996810	.	+	2	Parent=Os02t0722400-01
Chr02	irgsp1_rep	CDS	29996931	29997155	.	+	0	Parent=Os02t0722400-01
Chr02	irgsp1_rep	CDS	29997513	29997923	.	+	0	Parent=Os02t0722400-01
Chr02	irgsp1_rep	three_prime_UTR	29997924	29998068	.	+	.	Parent=Os02t0722400-01
Chr02	irgsp1_rep	mRNA	29993419	29997887	.	-	.	ID=Os02t0722450-00;Name=Os02t0722450-00;Locus_id=Os02g0722450;Note=Hypothetical protein.;Transcript_evidence=tplb0036o08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0722450-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	29997512	29997887	.	-	.	Parent=Os02t0722450-00
Chr02	irgsp1_rep	CDS	29997508	29997511	.	-	0	Parent=Os02t0722450-00
Chr02	irgsp1_rep	CDS	29996936	29997151	.	-	2	Parent=Os02t0722450-00
Chr02	irgsp1_rep	CDS	29996675	29996824	.	-	2	Parent=Os02t0722450-00
Chr02	irgsp1_rep	CDS	29995901	29996154	.	-	2	Parent=Os02t0722450-00
Chr02	irgsp1_rep	three_prime_UTR	29995849	29995900	.	-	.	Parent=Os02t0722450-00
Chr02	irgsp1_rep	three_prime_UTR	29993419	29993664	.	-	.	Parent=Os02t0722450-00
Chr02	irgsp1_rep	mRNA	29998326	30002783	.	-	.	ID=Os02t0722500-01;Name=Os02t0722500-01;Locus_id=Os02g0722500;Note=Arf GTPase activating protein family protein.;Transcript_evidence=AK066163 (DDBJ%2C Best hit);ORF_evidence=B6TSD4 (UniProt);GO=Biological Process: regulation of ARF GTPase activity (GO:0032312),Molecular Function: protein binding (GO:0005515),Molecular Function: ARF GTPase activator activity (GO:0008060),Molecular Function: zinc ion binding (GO:0008270);InterPro=C2 calcium-dependent membrane targeting (IPR000008),Arf GTPase activating protein (IPR001164),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=J013051C01;Expression=AK066163;TENOR=Os02t0722500-01;KEGG=Os02t0722500-01
Chr02	irgsp1_rep	five_prime_UTR	30002610	30002783	.	-	.	Parent=Os02t0722500-01
Chr02	irgsp1_rep	five_prime_UTR	30001419	30001469	.	-	.	Parent=Os02t0722500-01
Chr02	irgsp1_rep	CDS	30001367	30001418	.	-	0	Parent=Os02t0722500-01
Chr02	irgsp1_rep	CDS	30000987	30001071	.	-	2	Parent=Os02t0722500-01
Chr02	irgsp1_rep	CDS	30000733	30000808	.	-	1	Parent=Os02t0722500-01
Chr02	irgsp1_rep	CDS	30000373	30000536	.	-	0	Parent=Os02t0722500-01
Chr02	irgsp1_rep	CDS	30000045	30000174	.	-	1	Parent=Os02t0722500-01
Chr02	irgsp1_rep	CDS	29999768	29999884	.	-	0	Parent=Os02t0722500-01
Chr02	irgsp1_rep	CDS	29999584	29999679	.	-	0	Parent=Os02t0722500-01
Chr02	irgsp1_rep	CDS	29998538	29998816	.	-	0	Parent=Os02t0722500-01
Chr02	irgsp1_rep	three_prime_UTR	29998326	29998537	.	-	.	Parent=Os02t0722500-01
Chr02	irgsp1_rep	mRNA	30004088	30004574	.	+	.	ID=Os02t0722600-01;Name=Os02t0722600-01;Locus_id=Os02g0722600;Note=Non-protein coding transcript.;Transcript_evidence=AK062399 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-102-D11;TENOR=Os02t0722600-01
Chr02	irgsp1_rep	exon	30004088	30004574	.	+	.	Parent=Os02t0722600-01
Chr02	irgsp1_rep	mRNA	30008280	30008810	.	+	.	ID=Os02t0722650-00;Name=Os02t0722650-00;Locus_id=Os02g0722650;Note=Non-protein coding transcript.;Transcript_evidence=CT835474 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os02t0722650-00
Chr02	irgsp1_rep	exon	30008280	30008810	.	+	.	Parent=Os02t0722650-00
Chr02	irgsp1_rep	mRNA	30011066	30015609	.	+	.	ID=Os02t0722700-01;Name=Os02t0722700-01;Locus_id=Os02g0722700;Note=Similar to Nucleic acid binding protein.;Transcript_evidence=AK243485 (DDBJ%2C Best hit);ORF_evidence=B6TF49 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=K Homology (IPR004087);NIAS_FLcDNA=J100073F21;TENOR=Os02t0722700-01;KEGG=Os02t0722700-01
Chr02	irgsp1_rep	five_prime_UTR	30011066	30011206	.	+	.	Parent=Os02t0722700-01
Chr02	irgsp1_rep	CDS	30011207	30011316	.	+	0	Parent=Os02t0722700-01
Chr02	irgsp1_rep	CDS	30011806	30011891	.	+	1	Parent=Os02t0722700-01
Chr02	irgsp1_rep	CDS	30013170	30013318	.	+	2	Parent=Os02t0722700-01
Chr02	irgsp1_rep	CDS	30014088	30014192	.	+	0	Parent=Os02t0722700-01
Chr02	irgsp1_rep	CDS	30014286	30014402	.	+	0	Parent=Os02t0722700-01
Chr02	irgsp1_rep	CDS	30014758	30014901	.	+	0	Parent=Os02t0722700-01
Chr02	irgsp1_rep	CDS	30015026	30015175	.	+	0	Parent=Os02t0722700-01
Chr02	irgsp1_rep	three_prime_UTR	30015176	30015609	.	+	.	Parent=Os02t0722700-01
Chr02	irgsp1_rep	mRNA	30015998	30025935	.	-	.	ID=Os02t0722800-01;Name=Os02t0722800-01;Locus_id=Os02g0722800;Oryzabase Gene Symbol Synonym(s)=OsWD40-53;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK122035 (DDBJ%2C Best hit);ORF_evidence=B8AHN8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J033112L23;Oryzabase=10734;Expression=AK122035;TENOR=Os02t0722800-01;KEGG=Os02t0722800-01
Chr02	irgsp1_rep	five_prime_UTR	30025835	30025935	.	-	.	Parent=Os02t0722800-01
Chr02	irgsp1_rep	CDS	30025076	30025834	.	-	0	Parent=Os02t0722800-01
Chr02	irgsp1_rep	CDS	30024481	30024530	.	-	0	Parent=Os02t0722800-01
Chr02	irgsp1_rep	CDS	30024079	30024235	.	-	1	Parent=Os02t0722800-01
Chr02	irgsp1_rep	CDS	30023783	30024001	.	-	0	Parent=Os02t0722800-01
Chr02	irgsp1_rep	CDS	30022886	30023014	.	-	0	Parent=Os02t0722800-01
Chr02	irgsp1_rep	CDS	30021297	30021870	.	-	0	Parent=Os02t0722800-01
Chr02	irgsp1_rep	CDS	30020307	30021193	.	-	2	Parent=Os02t0722800-01
Chr02	irgsp1_rep	CDS	30018072	30018431	.	-	0	Parent=Os02t0722800-01
Chr02	irgsp1_rep	CDS	30017881	30018000	.	-	0	Parent=Os02t0722800-01
Chr02	irgsp1_rep	CDS	30017400	30017570	.	-	0	Parent=Os02t0722800-01
Chr02	irgsp1_rep	CDS	30017102	30017260	.	-	0	Parent=Os02t0722800-01
Chr02	irgsp1_rep	CDS	30016753	30016878	.	-	0	Parent=Os02t0722800-01
Chr02	irgsp1_rep	CDS	30016362	30016670	.	-	0	Parent=Os02t0722800-01
Chr02	irgsp1_rep	three_prime_UTR	30015998	30016361	.	-	.	Parent=Os02t0722800-01
Chr02	irgsp1_rep	mRNA	30016149	30018289	.	-	.	ID=Os02t0722800-02;Name=Os02t0722800-02;Locus_id=Os02g0722800;Oryzabase Gene Symbol Synonym(s)=OsWD40-53;Note=Similar to Peptidase S26A%2C signal peptidase I%3B WD40-like.;Transcript_evidence=AK061221 (DDBJ%2C Best hit);ORF_evidence=A2Q5F8 (UniProt);NIAS_FLcDNA=006-210-F03;Oryzabase=10734;TENOR=Os02t0722800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	30018240	30018289	.	-	.	Parent=Os02t0722800-02
Chr02	irgsp1_rep	CDS	30018072	30018239	.	-	0	Parent=Os02t0722800-02
Chr02	irgsp1_rep	CDS	30017881	30018000	.	-	0	Parent=Os02t0722800-02
Chr02	irgsp1_rep	CDS	30017400	30017570	.	-	0	Parent=Os02t0722800-02
Chr02	irgsp1_rep	CDS	30017102	30017260	.	-	0	Parent=Os02t0722800-02
Chr02	irgsp1_rep	CDS	30016753	30016878	.	-	0	Parent=Os02t0722800-02
Chr02	irgsp1_rep	CDS	30016362	30016670	.	-	0	Parent=Os02t0722800-02
Chr02	irgsp1_rep	three_prime_UTR	30016149	30016361	.	-	.	Parent=Os02t0722800-02
Chr02	irgsp1_rep	mRNA	30051750	30053275	.	+	.	ID=Os02t0723200-01;Name=Os02t0723200-01;Locus_id=Os02g0723200;Oryzabase Gene Symbol Synonym(s)=OsGT7;Oryzabase Gene Name Synonym(s)=glycosyltransferase 7;Note=Similar to Alpha galactosyltransferase (Fragment).;Transcript_evidence=AK108140 (DDBJ%2C Best hit);ORF_evidence=NP_001105164.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=Galactosyl transferase (IPR008630);NIAS_FLcDNA=002-139-E08;Oryzabase=15243;Expression=AK108140;TENOR=Os02t0723200-01;KEGG=Os02t0723200-01
Chr02	irgsp1_rep	five_prime_UTR	30051750	30051769	.	+	.	Parent=Os02t0723200-01
Chr02	irgsp1_rep	CDS	30051770	30053113	.	+	0	Parent=Os02t0723200-01
Chr02	irgsp1_rep	three_prime_UTR	30053114	30053275	.	+	.	Parent=Os02t0723200-01
Chr02	irgsp1_rep	mRNA	30053886	30058536	.	-	.	ID=Os02t0723300-01;Name=Os02t0723300-01;Locus_id=Os02g0723300;Note=Hypothetical conserved gene.;Transcript_evidence=AK242364 (DDBJ%2C Best hit);ORF_evidence=B9F2F9 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899);InterPro=RNA polymerase II%2C Rpb4 (IPR005574),HRDC-like (IPR010997);NIAS_FLcDNA=J080032M07;TENOR=Os02t0723300-01;KEGG=Os02t0723300-01
Chr02	irgsp1_rep	five_prime_UTR	30058419	30058536	.	-	.	Parent=Os02t0723300-01
Chr02	irgsp1_rep	CDS	30058352	30058418	.	-	0	Parent=Os02t0723300-01
Chr02	irgsp1_rep	CDS	30056501	30056593	.	-	2	Parent=Os02t0723300-01
Chr02	irgsp1_rep	CDS	30055354	30055446	.	-	2	Parent=Os02t0723300-01
Chr02	irgsp1_rep	CDS	30055083	30055181	.	-	2	Parent=Os02t0723300-01
Chr02	irgsp1_rep	CDS	30054675	30054786	.	-	2	Parent=Os02t0723300-01
Chr02	irgsp1_rep	CDS	30054480	30054557	.	-	1	Parent=Os02t0723300-01
Chr02	irgsp1_rep	CDS	30054333	30054366	.	-	1	Parent=Os02t0723300-01
Chr02	irgsp1_rep	CDS	30054188	30054256	.	-	0	Parent=Os02t0723300-01
Chr02	irgsp1_rep	CDS	30054028	30054102	.	-	0	Parent=Os02t0723300-01
Chr02	irgsp1_rep	three_prime_UTR	30054007	30054027	.	-	.	Parent=Os02t0723300-01
Chr02	irgsp1_rep	three_prime_UTR	30053886	30053916	.	-	.	Parent=Os02t0723300-01
Chr02	irgsp1_rep	mRNA	30064358	30065073	.	+	.	ID=Os02t0723400-01;Name=Os02t0723400-01;Locus_id=Os02g0723400;CGSNL Gene Symbol=IAA8;Oryzabase Gene Symbol Synonym(s)=OsIAA8;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 8%2C INDOLE-3-ACETIC ACID INDUCIBLE 8-LIKE;Note=Similar to Isoform 2 of Auxin-responsive protein IAA8.;Transcript_evidence=AK108275 (DDBJ%2C Best hit);ORF_evidence=Q6Z5M0-2 (UniProt);NIAS_FLcDNA=002-141-C07;Oryzabase=10899;Expression=AK108275;TENOR=Os02t0723400-01;KEGG=Os02t0723400-01
Chr02	irgsp1_rep	five_prime_UTR	30064358	30064580	.	+	.	Parent=Os02t0723400-01
Chr02	irgsp1_rep	CDS	30064581	30064835	.	+	0	Parent=Os02t0723400-01
Chr02	irgsp1_rep	three_prime_UTR	30064836	30065073	.	+	.	Parent=Os02t0723400-01
Chr02	irgsp1_rep	mRNA	30064483	30066172	.	+	.	ID=Os02t0723400-02;Name=Os02t0723400-02;Locus_id=Os02g0723400;CGSNL Gene Symbol=IAA8;Oryzabase Gene Symbol Synonym(s)=OsIAA8;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 8%2C INDOLE-3-ACETIC ACID INDUCIBLE 8-LIKE;Note=AUX/IAA protein family protein.;Transcript_evidence=AK066518 (DDBJ%2C Best hit);ORF_evidence=Q6Z5M0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Aux/IAA-ARF-dimerisation (IPR011525);NIAS_FLcDNA=J013070M23;Oryzabase=10899;Expression=AK066518;TENOR=Os02t0723400-02;KEGG=Os02t0723400-02
Chr02	irgsp1_rep	five_prime_UTR	30064483	30064580	.	+	.	Parent=Os02t0723400-02
Chr02	irgsp1_rep	CDS	30064581	30064814	.	+	0	Parent=Os02t0723400-02
Chr02	irgsp1_rep	CDS	30065200	30065395	.	+	0	Parent=Os02t0723400-02
Chr02	irgsp1_rep	CDS	30065501	30065618	.	+	2	Parent=Os02t0723400-02
Chr02	irgsp1_rep	CDS	30065816	30065885	.	+	1	Parent=Os02t0723400-02
Chr02	irgsp1_rep	three_prime_UTR	30065886	30066172	.	+	.	Parent=Os02t0723400-02
Chr02	irgsp1_rep	mRNA	30067771	30071645	.	-	.	ID=Os02t0723600-00;Name=Os02t0723600-00;Locus_id=Os02g0723600;Note=Similar to RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10MU3 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899),Molecular Function: protein dimerization activity (GO:0046983);InterPro=DNA-directed RNA polymerase%2C 30-40kDa subunit%2C conserved site (IPR001514),DNA-directed RNA polymerase%2C RBP11-like (IPR009025),DNA-directed RNA polymerase%2C dimerisation (IPR011261),DNA-directed RNA polymerase%2C insert domain (IPR011262),DNA-directed RNA polymerase%2C RpoA/D/Rpb3-type (IPR011263);TENOR=Os02t0723600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	30071520	30071645	.	-	0	Parent=Os02t0723600-00
Chr02	irgsp1_rep	CDS	30071052	30071237	.	-	0	Parent=Os02t0723600-00
Chr02	irgsp1_rep	CDS	30070800	30070929	.	-	0	Parent=Os02t0723600-00
Chr02	irgsp1_rep	CDS	30070629	30070709	.	-	2	Parent=Os02t0723600-00
Chr02	irgsp1_rep	CDS	30069800	30069981	.	-	2	Parent=Os02t0723600-00
Chr02	irgsp1_rep	CDS	30069160	30069253	.	-	0	Parent=Os02t0723600-00
Chr02	irgsp1_rep	CDS	30067771	30067874	.	-	2	Parent=Os02t0723600-00
Chr02	irgsp1_rep	mRNA	30072166	30074833	.	+	.	ID=Os02t0723700-01;Name=Os02t0723700-01;Locus_id=Os02g0723700;CGSNL Gene Symbol=DLN67;CGSNL Gene Name=DLN REPRESSOR 67;Oryzabase Gene Symbol Synonym(s)=OsDLN67;Oryzabase Gene Name Synonym(s)=DLN repressor 67%2C DLN motif protein 67;Note=SNF5/SMARCB1/INI1 family protein.;Transcript_evidence=AK073256 (DDBJ%2C Best hit);ORF_evidence=B6T3Y4 (UniProt);GO=Biological Process: Chromatin remodeling (GO:0006338),Cellular Component: nuclear Chromosome (GO:0000228);InterPro=SNF5/SMARCB1/INI1 (IPR006939);NIAS_FLcDNA=J033023H11;Oryzabase=23176;Expression=AK073256;TENOR=Os02t0723700-01;KEGG=Os02t0723700-01
Chr02	irgsp1_rep	CDS	30072166	30072271	.	+	0	Parent=Os02t0723700-01
Chr02	irgsp1_rep	CDS	30072369	30072463	.	+	2	Parent=Os02t0723700-01
Chr02	irgsp1_rep	CDS	30072567	30072638	.	+	0	Parent=Os02t0723700-01
Chr02	irgsp1_rep	CDS	30072722	30072769	.	+	0	Parent=Os02t0723700-01
Chr02	irgsp1_rep	CDS	30072891	30072974	.	+	0	Parent=Os02t0723700-01
Chr02	irgsp1_rep	CDS	30073559	30073597	.	+	0	Parent=Os02t0723700-01
Chr02	irgsp1_rep	CDS	30073729	30073814	.	+	0	Parent=Os02t0723700-01
Chr02	irgsp1_rep	CDS	30073933	30073995	.	+	1	Parent=Os02t0723700-01
Chr02	irgsp1_rep	CDS	30074208	30074303	.	+	1	Parent=Os02t0723700-01
Chr02	irgsp1_rep	CDS	30074421	30074430	.	+	1	Parent=Os02t0723700-01
Chr02	irgsp1_rep	three_prime_UTR	30074431	30074833	.	+	.	Parent=Os02t0723700-01
Chr02	irgsp1_rep	mRNA	30094300	30099072	.	+	.	ID=Os02t0724000-01;Name=Os02t0724000-01;Locus_id=Os02g0724000;RAP-DB Gene Symbol Synonym(s)=DTH2%2C OsCCT08%2C OsBBX7%2C OsN;RAP-DB Gene Name Synonym(s)=Days to heading on Chromosome 2%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 8%2C CCT domain protein 8%2C B-box-containing protein 7%2C CONSTANS-like gene N;Oryzabase Gene Symbol Synonym(s)=OsN%2C OsBBX7%2C OsCCT08%2C OsDTH2%2C BBX7%2C CCT08%2C DTH2;Oryzabase Gene Name Synonym(s)=CONSTANS-like gene N%2C B-box-containing protein 7%2C CCT domain-containing gene 8%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 8%2C CCT domain protein 8;Note=CONSTANS-like protein%2C Heading promotion under long-day condition;Transcript_evidence=AK071630,JX202590 (Asominori);ORF_evidence=O82118;GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Cellular Component: intracellular (GO:0005622);InterPro=Zinc finger%2C B-box (IPR000315),CCT domain (IPR010402);NIAS_FLcDNA=J023105D03;Manual Curation=July 6%2C 2017;Literature_PMID=25563494,23388640;Oryzabase=10310;Expression=AK071630;TENOR=Os02t0724000-01;KEGG=Os02t0724000-01
Chr02	irgsp1_rep	five_prime_UTR	30094300	30094498	.	+	.	Parent=Os02t0724000-01
Chr02	irgsp1_rep	five_prime_UTR	30096198	30096305	.	+	.	Parent=Os02t0724000-01
Chr02	irgsp1_rep	CDS	30096306	30096893	.	+	0	Parent=Os02t0724000-01
Chr02	irgsp1_rep	CDS	30097390	30097590	.	+	0	Parent=Os02t0724000-01
Chr02	irgsp1_rep	CDS	30097861	30098165	.	+	0	Parent=Os02t0724000-01
Chr02	irgsp1_rep	CDS	30098451	30098580	.	+	1	Parent=Os02t0724000-01
Chr02	irgsp1_rep	three_prime_UTR	30098581	30099072	.	+	.	Parent=Os02t0724000-01
Chr02	irgsp1_rep	mRNA	30099172	30100180	.	-	.	ID=Os02t0724100-01;Name=Os02t0724100-01;Locus_id=Os02g0724100;Note=Conserved hypothetical protein.;Transcript_evidence=AK107565 (DDBJ%2C Best hit);ORF_evidence=A3AAW3 (UniProt);NIAS_FLcDNA=002-130-C07;Expression=AK107565;TENOR=Os02t0724100-01;KEGG=Os02t0724100-01
Chr02	irgsp1_rep	five_prime_UTR	30100042	30100180	.	-	.	Parent=Os02t0724100-01
Chr02	irgsp1_rep	CDS	30099313	30100041	.	-	0	Parent=Os02t0724100-01
Chr02	irgsp1_rep	three_prime_UTR	30099172	30099312	.	-	.	Parent=Os02t0724100-01
Chr02	irgsp1_rep	mRNA	30102045	30102837	.	-	.	ID=Os02t0724300-01;Name=Os02t0724300-01;Locus_id=Os02g0724300;Note=Non-protein coding transcript.;Transcript_evidence=AK105206 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-108-G04;TENOR=Os02t0724300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	exon	30102045	30102837	.	-	.	Parent=Os02t0724300-01
Chr02	irgsp1_rep	mRNA	30102165	30102794	.	-	.	ID=Os02t0724300-02;Name=Os02t0724300-02;Locus_id=Os02g0724300;Note=Non-protein coding transcript.;Transcript_evidence=AK119718 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-157-G02;TENOR=Os02t0724300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	exon	30102165	30102794	.	-	.	Parent=Os02t0724300-02
Chr02	irgsp1_rep	mRNA	30103795	30104350	.	+	.	ID=Os02t0724450-00;Name=Os02t0724450-00;Locus_id=Os02g0724450;Note=Hypothetical protein.;Transcript_evidence=AK364776 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0724450-00
Chr02	irgsp1_rep	five_prime_UTR	30103795	30103795	.	+	.	Parent=Os02t0724450-00
Chr02	irgsp1_rep	CDS	30103796	30104080	.	+	0	Parent=Os02t0724450-00
Chr02	irgsp1_rep	three_prime_UTR	30104081	30104350	.	+	.	Parent=Os02t0724450-00
Chr02	irgsp1_rep	mRNA	30105720	30109792	.	+	.	ID=Os02t0724500-00;Name=Os02t0724500-00;Locus_id=Os02g0724500;Oryzabase Gene Symbol Synonym(s)=OsSTA72;Note=Similar to transporter-related.;Transcript_evidence=BT033249 (DDBJ);ORF_evidence=NP_200406.1 (RefSeq);InterPro=Domain of unknown function DUF250 (IPR004853);Oryzabase=19372;TENOR=Os02t0724500-00;KEGG=Os02t0724500-00
Chr02	irgsp1_rep	five_prime_UTR	30105720	30105729	.	+	.	Parent=Os02t0724500-00
Chr02	irgsp1_rep	CDS	30105730	30105865	.	+	0	Parent=Os02t0724500-00
Chr02	irgsp1_rep	CDS	30106945	30107096	.	+	2	Parent=Os02t0724500-00
Chr02	irgsp1_rep	CDS	30107215	30107423	.	+	0	Parent=Os02t0724500-00
Chr02	irgsp1_rep	CDS	30107525	30107618	.	+	1	Parent=Os02t0724500-00
Chr02	irgsp1_rep	CDS	30107877	30108043	.	+	0	Parent=Os02t0724500-00
Chr02	irgsp1_rep	CDS	30108117	30108287	.	+	1	Parent=Os02t0724500-00
Chr02	irgsp1_rep	CDS	30109430	30109691	.	+	1	Parent=Os02t0724500-00
Chr02	irgsp1_rep	three_prime_UTR	30109692	30109792	.	+	.	Parent=Os02t0724500-00
Chr02	irgsp1_rep	mRNA	30110288	30115478	.	+	.	ID=Os02t0724600-01;Name=Os02t0724600-01;Locus_id=Os02g0724600;Note=Similar to predicted protein.;Transcript_evidence=AK243440 (DDBJ%2C Best hit);ORF_evidence=D0MX46 (UniProt);GO=Biological Process: rRNA processing (GO:0006364),Molecular Function: RNA binding (GO:0003723),Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757);InterPro=Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (IPR001678),Nop2p (IPR011023),Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p%2C conserved site (IPR018314),RNA (C5-cytosine) methyltransferase (IPR023267),RNA (C5-cytosine) methyltransferase%2C NOP2 (IPR023273);NIAS_FLcDNA=J100068F05;TENOR=Os02t0724600-01;KEGG=Os02t0724600-01
Chr02	irgsp1_rep	five_prime_UTR	30110288	30110301	.	+	.	Parent=Os02t0724600-01
Chr02	irgsp1_rep	CDS	30110302	30110665	.	+	0	Parent=Os02t0724600-01
Chr02	irgsp1_rep	CDS	30110849	30111012	.	+	2	Parent=Os02t0724600-01
Chr02	irgsp1_rep	CDS	30111109	30111172	.	+	0	Parent=Os02t0724600-01
Chr02	irgsp1_rep	CDS	30111589	30111722	.	+	2	Parent=Os02t0724600-01
Chr02	irgsp1_rep	CDS	30111876	30111959	.	+	0	Parent=Os02t0724600-01
Chr02	irgsp1_rep	CDS	30112087	30112161	.	+	0	Parent=Os02t0724600-01
Chr02	irgsp1_rep	CDS	30112241	30112312	.	+	0	Parent=Os02t0724600-01
Chr02	irgsp1_rep	CDS	30112399	30112472	.	+	0	Parent=Os02t0724600-01
Chr02	irgsp1_rep	CDS	30112724	30112776	.	+	1	Parent=Os02t0724600-01
Chr02	irgsp1_rep	CDS	30112895	30113004	.	+	2	Parent=Os02t0724600-01
Chr02	irgsp1_rep	CDS	30113331	30113399	.	+	0	Parent=Os02t0724600-01
Chr02	irgsp1_rep	CDS	30113482	30113556	.	+	0	Parent=Os02t0724600-01
Chr02	irgsp1_rep	CDS	30114062	30114154	.	+	0	Parent=Os02t0724600-01
Chr02	irgsp1_rep	CDS	30114225	30114304	.	+	0	Parent=Os02t0724600-01
Chr02	irgsp1_rep	CDS	30114384	30114483	.	+	1	Parent=Os02t0724600-01
Chr02	irgsp1_rep	CDS	30114660	30115093	.	+	0	Parent=Os02t0724600-01
Chr02	irgsp1_rep	CDS	30115186	30115222	.	+	1	Parent=Os02t0724600-01
Chr02	irgsp1_rep	three_prime_UTR	30115223	30115478	.	+	.	Parent=Os02t0724600-01
Chr02	irgsp1_rep	mRNA	30134553	30135803	.	-	.	ID=Os02t0724850-00;Name=Os02t0724850-00;Locus_id=Os02g0724850;Note=Hypothetical gene.;Transcript_evidence=CU405679 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os02t0724850-00;KEGG=Os02t0724850-00
Chr02	irgsp1_rep	CDS	30135513	30135803	.	-	0	Parent=Os02t0724850-00
Chr02	irgsp1_rep	three_prime_UTR	30134553	30135512	.	-	.	Parent=Os02t0724850-00
Chr02	irgsp1_rep	mRNA	30135368	30138655	.	+	.	ID=Os02t0725000-01;Name=Os02t0725000-01;Locus_id=Os02g0725000;Note=Similar to Protein kinase G11A (EC 2.7.1.-) (Fragment).;Transcript_evidence=AK065888 (DDBJ%2C Best hit);ORF_evidence=B6SY10 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013044J15;Expression=AK065888;TENOR=Os02t0725000-01;KEGG=Os02t0725000-01
Chr02	irgsp1_rep	five_prime_UTR	30135368	30135539	.	+	.	Parent=Os02t0725000-01
Chr02	irgsp1_rep	five_prime_UTR	30136431	30136527	.	+	.	Parent=Os02t0725000-01
Chr02	irgsp1_rep	CDS	30136528	30137417	.	+	0	Parent=Os02t0725000-01
Chr02	irgsp1_rep	CDS	30137637	30138513	.	+	1	Parent=Os02t0725000-01
Chr02	irgsp1_rep	three_prime_UTR	30138514	30138655	.	+	.	Parent=Os02t0725000-01
Chr02	irgsp1_rep	mRNA	30139911	30143452	.	-	.	ID=Os02t0725100-01;Name=Os02t0725100-01;Locus_id=Os02g0725100;Note=Thioredoxin fold domain containing protein.;Transcript_evidence=AK104276 (DDBJ%2C Best hit),AK071759 (DDBJ%2C Best hit);ORF_evidence=B6TKT6 (UniProt);InterPro=Sucraseferredoxin-like (IPR009737),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=001-003-A01,J023109C03;Expression=AK104276;TENOR=Os02t0725100-01;KEGG=Os02t0725100-01
Chr02	irgsp1_rep	CDS	30143045	30143452	.	-	0	Parent=Os02t0725100-01
Chr02	irgsp1_rep	CDS	30142041	30142126	.	-	0	Parent=Os02t0725100-01
Chr02	irgsp1_rep	CDS	30141622	30141927	.	-	1	Parent=Os02t0725100-01
Chr02	irgsp1_rep	CDS	30141418	30141501	.	-	1	Parent=Os02t0725100-01
Chr02	irgsp1_rep	CDS	30140066	30140480	.	-	1	Parent=Os02t0725100-01
Chr02	irgsp1_rep	three_prime_UTR	30139911	30140065	.	-	.	Parent=Os02t0725100-01
Chr02	irgsp1_rep	mRNA	30144260	30148692	.	+	.	ID=Os02t0725200-01;Name=Os02t0725200-01;Locus_id=Os02g0725200;Oryzabase Gene Symbol Synonym(s)=OsSET12;Oryzabase Gene Name Synonym(s)=SET protein 12;Note=SET domain containing protein.;Transcript_evidence=AK103602 (DDBJ%2C Best hit);ORF_evidence=B6U6Z1 (UniProt);GO=Cellular Component: chloroplast (GO:0009507),Molecular Function: protein binding (GO:0005515),Molecular Function: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity (GO:0030785);InterPro=SET domain (IPR001214),Rubisco methyltransferase (IPR011192),Rubisco LS methyltransferase%2C substrate-binding domain (IPR015353);NIAS_FLcDNA=J033133G01;Oryzabase=13378;Expression=AK103602;TENOR=Os02t0725200-01;KEGG=Os02t0725200-01
Chr02	irgsp1_rep	five_prime_UTR	30144260	30144312	.	+	.	Parent=Os02t0725200-01
Chr02	irgsp1_rep	CDS	30144313	30144690	.	+	0	Parent=Os02t0725200-01
Chr02	irgsp1_rep	CDS	30144822	30144985	.	+	0	Parent=Os02t0725200-01
Chr02	irgsp1_rep	CDS	30145078	30145161	.	+	1	Parent=Os02t0725200-01
Chr02	irgsp1_rep	CDS	30145244	30145301	.	+	1	Parent=Os02t0725200-01
Chr02	irgsp1_rep	CDS	30145599	30145652	.	+	0	Parent=Os02t0725200-01
Chr02	irgsp1_rep	CDS	30145817	30145888	.	+	0	Parent=Os02t0725200-01
Chr02	irgsp1_rep	CDS	30146054	30146134	.	+	0	Parent=Os02t0725200-01
Chr02	irgsp1_rep	CDS	30146868	30147040	.	+	0	Parent=Os02t0725200-01
Chr02	irgsp1_rep	CDS	30147423	30147525	.	+	1	Parent=Os02t0725200-01
Chr02	irgsp1_rep	CDS	30147655	30147786	.	+	0	Parent=Os02t0725200-01
Chr02	irgsp1_rep	CDS	30147939	30148061	.	+	0	Parent=Os02t0725200-01
Chr02	irgsp1_rep	CDS	30148158	30148244	.	+	0	Parent=Os02t0725200-01
Chr02	irgsp1_rep	three_prime_UTR	30148245	30148311	.	+	.	Parent=Os02t0725200-01
Chr02	irgsp1_rep	three_prime_UTR	30148391	30148692	.	+	.	Parent=Os02t0725200-01
Chr02	irgsp1_rep	mRNA	30144945	30148672	.	+	.	ID=Os02t0725200-02;Name=Os02t0725200-02;Locus_id=Os02g0725200;Oryzabase Gene Symbol Synonym(s)=OsSET12;Oryzabase Gene Name Synonym(s)=SET protein 12;Note=Similar to Ribulose-1%2C5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I.;Transcript_evidence=AK058309 (DDBJ%2C Best hit);ORF_evidence=B6U6Z1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=SET domain (IPR001214),Rubisco LS methyltransferase%2C substrate-binding domain (IPR015353);NIAS_FLcDNA=001-013-H08;Oryzabase=13378;Expression=AK058309;TENOR=Os02t0725200-02;KEGG=Os02t0725200-02
Chr02	irgsp1_rep	CDS	30144945	30144985	.	+	0	Parent=Os02t0725200-02
Chr02	irgsp1_rep	CDS	30145078	30145161	.	+	1	Parent=Os02t0725200-02
Chr02	irgsp1_rep	CDS	30145244	30145301	.	+	1	Parent=Os02t0725200-02
Chr02	irgsp1_rep	CDS	30145599	30145652	.	+	0	Parent=Os02t0725200-02
Chr02	irgsp1_rep	CDS	30145817	30145888	.	+	0	Parent=Os02t0725200-02
Chr02	irgsp1_rep	CDS	30146054	30146134	.	+	0	Parent=Os02t0725200-02
Chr02	irgsp1_rep	CDS	30146868	30147040	.	+	0	Parent=Os02t0725200-02
Chr02	irgsp1_rep	CDS	30147423	30147525	.	+	1	Parent=Os02t0725200-02
Chr02	irgsp1_rep	CDS	30147655	30147786	.	+	0	Parent=Os02t0725200-02
Chr02	irgsp1_rep	CDS	30147939	30148061	.	+	0	Parent=Os02t0725200-02
Chr02	irgsp1_rep	CDS	30148158	30148244	.	+	0	Parent=Os02t0725200-02
Chr02	irgsp1_rep	three_prime_UTR	30148245	30148311	.	+	.	Parent=Os02t0725200-02
Chr02	irgsp1_rep	three_prime_UTR	30148391	30148672	.	+	.	Parent=Os02t0725200-02
Chr02	irgsp1_rep	mRNA	30148858	30153815	.	+	.	ID=Os02t0725300-01;Name=Os02t0725300-01;Locus_id=Os02g0725300;CGSNL Gene Symbol=CSLE2;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE E2;Oryzabase Gene Symbol Synonym(s)=OsCslE2%2C OsCSLE2;Note=Cellulose synthase family protein.;Transcript_evidence=AK101487 (DDBJ%2C Best hit);ORF_evidence=Q0DXZ1 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150);NIAS_FLcDNA=J033042D19;Oryzabase=13898;Expression=AK101487;TENOR=Os02t0725300-01;KEGG=Os02t0725300-01
Chr02	irgsp1_rep	five_prime_UTR	30148858	30148915	.	+	.	Parent=Os02t0725300-01
Chr02	irgsp1_rep	CDS	30148916	30149229	.	+	0	Parent=Os02t0725300-01
Chr02	irgsp1_rep	CDS	30149444	30149765	.	+	1	Parent=Os02t0725300-01
Chr02	irgsp1_rep	CDS	30151480	30151620	.	+	0	Parent=Os02t0725300-01
Chr02	irgsp1_rep	CDS	30151859	30151990	.	+	0	Parent=Os02t0725300-01
Chr02	irgsp1_rep	CDS	30152096	30152308	.	+	0	Parent=Os02t0725300-01
Chr02	irgsp1_rep	CDS	30152408	30152626	.	+	0	Parent=Os02t0725300-01
Chr02	irgsp1_rep	CDS	30152779	30153126	.	+	0	Parent=Os02t0725300-01
Chr02	irgsp1_rep	CDS	30153218	30153766	.	+	0	Parent=Os02t0725300-01
Chr02	irgsp1_rep	three_prime_UTR	30153767	30153815	.	+	.	Parent=Os02t0725300-01
Chr02	irgsp1_rep	mRNA	30148866	30149898	.	+	.	ID=Os02t0725300-02;Name=Os02t0725300-02;Locus_id=Os02g0725300;CGSNL Gene Symbol=CSLE2;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE E2;Oryzabase Gene Symbol Synonym(s)=OsCslE2%2C OsCSLE2;Note=Similar to cDNA clone:J033042D19%2C full insert sequence.;Transcript_evidence=AK107881 (DDBJ%2C Best hit);ORF_evidence=B7ERT8 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150);NIAS_FLcDNA=002-134-D06;Oryzabase=13898;Expression=AK107881;TENOR=Os02t0725300-02;KEGG=Os02t0725300-02
Chr02	irgsp1_rep	five_prime_UTR	30148866	30148915	.	+	.	Parent=Os02t0725300-02
Chr02	irgsp1_rep	CDS	30148916	30149229	.	+	0	Parent=Os02t0725300-02
Chr02	irgsp1_rep	CDS	30149444	30149786	.	+	1	Parent=Os02t0725300-02
Chr02	irgsp1_rep	three_prime_UTR	30149787	30149898	.	+	.	Parent=Os02t0725300-02
Chr02	irgsp1_rep	mRNA	30148866	30149378	.	+	.	ID=Os02t0725300-03;Name=Os02t0725300-03;Locus_id=Os02g0725300;CGSNL Gene Symbol=CSLE2;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE E2;Oryzabase Gene Symbol Synonym(s)=OsCslE2%2C OsCSLE2;Note=Similar to cDNA clone:J033042D19%2C full insert sequence.;Transcript_evidence=AK111344 (DDBJ%2C Best hit);ORF_evidence=B7ERT8 (UniProt);NIAS_FLcDNA=002-181-F12;Oryzabase=13898;Expression=AK111344;TENOR=Os02t0725300-03;KEGG=Os02t0725300-03
Chr02	irgsp1_rep	five_prime_UTR	30148866	30148915	.	+	.	Parent=Os02t0725300-03
Chr02	irgsp1_rep	CDS	30148916	30149275	.	+	0	Parent=Os02t0725300-03
Chr02	irgsp1_rep	three_prime_UTR	30149276	30149378	.	+	.	Parent=Os02t0725300-03
Chr02	irgsp1_rep	mRNA	30150510	30153815	.	+	.	ID=Os02t0725300-04;Name=Os02t0725300-04;Locus_id=Os02g0725300;CGSNL Gene Symbol=CSLE2;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE E2;Oryzabase Gene Symbol Synonym(s)=OsCslE2%2C OsCSLE2;Note=Similar to cDNA clone:J033042D19%2C full insert sequence.;Transcript_evidence=AK120054 (DDBJ%2C Best hit);ORF_evidence=B7ERT8 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150);NIAS_FLcDNA=J013000L05;Oryzabase=13898;Expression=AK120054;TENOR=Os02t0725300-04;KEGG=Os02t0725300-04
Chr02	irgsp1_rep	five_prime_UTR	30150510	30151338	.	+	.	Parent=Os02t0725300-04
Chr02	irgsp1_rep	CDS	30151339	30151365	.	+	0	Parent=Os02t0725300-04
Chr02	irgsp1_rep	CDS	30151480	30151620	.	+	0	Parent=Os02t0725300-04
Chr02	irgsp1_rep	CDS	30151859	30151990	.	+	0	Parent=Os02t0725300-04
Chr02	irgsp1_rep	CDS	30152096	30152308	.	+	0	Parent=Os02t0725300-04
Chr02	irgsp1_rep	CDS	30152408	30152626	.	+	0	Parent=Os02t0725300-04
Chr02	irgsp1_rep	CDS	30152779	30153126	.	+	0	Parent=Os02t0725300-04
Chr02	irgsp1_rep	CDS	30153218	30153766	.	+	0	Parent=Os02t0725300-04
Chr02	irgsp1_rep	three_prime_UTR	30153767	30153815	.	+	.	Parent=Os02t0725300-04
Chr02	irgsp1_rep	mRNA	30157603	30158660	.	-	.	ID=Os02t0725500-00;Name=Os02t0725500-00;Locus_id=Os02g0725500;CGSNL Gene Symbol=ENODL9;CGSNL Gene Name=EARLY NODULIN LIKE PROTEIN 9;Oryzabase Gene Symbol Synonym(s)=OsENODL9;Oryzabase Gene Name Synonym(s)=early nodulin-like protein 9;Note=Cupredoxin domain containing protein.;Transcript_evidence=CT835340 (DDBJ%2C Best hit);ORF_evidence=NP_001151514.1 (RefSeq);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);Oryzabase=9734;TENOR=Os02t0725500-00;KEGG=Os02t0725500-00
Chr02	irgsp1_rep	five_prime_UTR	30158583	30158660	.	-	.	Parent=Os02t0725500-00
Chr02	irgsp1_rep	CDS	30158402	30158582	.	-	0	Parent=Os02t0725500-00
Chr02	irgsp1_rep	CDS	30157861	30158336	.	-	2	Parent=Os02t0725500-00
Chr02	irgsp1_rep	three_prime_UTR	30157603	30157860	.	-	.	Parent=Os02t0725500-00
Chr02	irgsp1_rep	mRNA	30160390	30161717	.	+	.	ID=Os02t0725600-01;Name=Os02t0725600-01;Locus_id=Os02g0725600;Note=tRNA (guanine-N1-)-methyltransferase%2C eukaryotic domain containing protein.;Transcript_evidence=AK058341 (DDBJ%2C Best hit);ORF_evidence=A2Q1R6 (UniProt);InterPro=tRNA (guanine-N1-)-methyltransferase%2C eukaryotic (IPR007356),tRNA (guanine-N1-)-methyltransferase (IPR016009);NIAS_FLcDNA=001-014-D08;Expression=AK058341;TENOR=Os02t0725600-01;KEGG=Os02t0725600-01
Chr02	irgsp1_rep	five_prime_UTR	30160390	30160390	.	+	.	Parent=Os02t0725600-01
Chr02	irgsp1_rep	CDS	30160391	30160627	.	+	0	Parent=Os02t0725600-01
Chr02	irgsp1_rep	CDS	30161083	30161511	.	+	0	Parent=Os02t0725600-01
Chr02	irgsp1_rep	three_prime_UTR	30161512	30161717	.	+	.	Parent=Os02t0725600-01
Chr02	irgsp1_rep	mRNA	30164300	30165377	.	-	.	ID=Os02t0725700-01;Name=Os02t0725700-01;Locus_id=Os02g0725700;RAP-DB Gene Symbol Synonym(s)=OsLEC1%2C OsLEC1/OsHAP3E%2C OsHAP3E;RAP-DB Gene Name Synonym(s)=leafy cotyledon 1%2C HAP3 subunit E;CGSNL Gene Symbol=HAP3E;CGSNL Gene Name=HAP3E SUBUNIT OF CCAAT-BOX BINDING COMPLEX;Oryzabase Gene Symbol Synonym(s)=OsHAP3E%2C OsLEC1/OsHAP3E%2C OsLEC1%2C OsNF-YB7%2C NF-YB7%2C NFYB7%2C L1L;Oryzabase Gene Name Synonym(s)=HAP3 subunit E%2C LEC1-type 3 subunit protein-E%2C leafy cotyledon 1%2C NUCLEAR FACTOR-Y subunit B7%2C NUCLEAR FACTOR-Y subunit NF-YB7%2C LEC1-LIKE%2C LEAFY COTYLEDON1-LIKE%2C HAP3 SUBUNIT E%2C NF-YB subunit 7%2C NF-YB family 7;Note=Subunit of a CCAAT-motif binding HAP complex%2C Regulation of meristem identity determination%2C Vegetative and reproductive development;Transcript_evidence=AK107861;ORF_evidence=Q6ZFM9;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein heterodimerization activity (GO:0046982),Cellular Component: nucleus (GO:0005634);InterPro=Histone-fold (IPR009072),Transcription factor CBF/NF-Y/archaeal histone domain (IPR003958),Transcription factor%2C NFYB/HAP3%2C conserved site (IPR003956);NIAS_FLcDNA=002-134-B07;Manual Curation=October 13%2C 2020;Literature_PMID=23230849,21683874;Oryzabase=8484;Expression=AK107861;TENOR=Os02t0725700-01;KEGG=Os02t0725700-01;Subcellular location=nucleus (GO:0005634)
Chr02	irgsp1_rep	five_prime_UTR	30165377	30165377	.	-	.	Parent=Os02t0725700-01
Chr02	irgsp1_rep	CDS	30164612	30165376	.	-	0	Parent=Os02t0725700-01
Chr02	irgsp1_rep	three_prime_UTR	30164300	30164611	.	-	.	Parent=Os02t0725700-01
Chr02	irgsp1_rep	mRNA	30191485	30192488	.	-	.	ID=Os02t0725900-01;Name=Os02t0725900-01;Locus_id=Os02g0725900;RAP-DB Gene Symbol Synonym(s)=HAP3K%2C OsHAP3K/OsNF-YB1%2C OsHAP3K%2C OsNF-YB1%2C nf-yb1%2C OsLEC1%2C OsNF-YB-1%2C NFYB1%2C OsEnS-41;RAP-DB Gene Name Synonym(s)=HAP3K SUBUNIT OF CCAAT-BOX BINDING COMPLEX%2C Nuclear transcription factor Y subunit B-1%2C CCAAT-binding transcription factor subunit NF-YB1%2C leafy cotyledon 1%2C endosperm-specific gene 41%2C Nuclear Factor YB1;CGSNL Gene Symbol=HAP3K;CGSNL Gene Name=HAP3K SUBUNIT OF CCAAT-BOX BINDING COMPLEX;Oryzabase Gene Symbol Synonym(s)=OsHAP3K/OsNF-YB1%2C OsHAP3K%2C OsNF-YB1%2C NF-YB1%2C nf-yb1%2C OsLEC1%2C OsNF-YB-1%2C NFYB1%2C OsEnS-41;Oryzabase Gene Name Synonym(s)=Nuclear transcription factor Y subunit B-1%2C CCAAT-binding transcription factor subunit NF-YB1%2C leafy cotyledon 1%2C endosperm-specific gene 41%2C Nuclear Factor YB1%2C NUCLEAR FACTOR-Y subunit B1%2C NUCLEAR FACTOR-Y subunit NF-YB1%2C NF-YB subunit 1%2C NF-YB family 1;Note=Component of the NF-Y/HAP transcription factor complex%2C Regulation of endosperm development;Transcript_evidence=AJ300218 (Arborio),AK241920;ORF_evidence=Q6Z348,Q0DXY7;GO=Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein heterodimerization activity (GO:0046982),Cellular Component: intracellular (GO:0005622);InterPro=Histone-fold (IPR009072),Transcription factor CBF/NF-Y/archaeal histone (IPR003958);NIAS_FLcDNA=J075074G07;Manual Curation=July 7%2C 2015;Literature_PMID=25178525,18193457,11971906;Oryzabase=8490;TENOR=Os02t0725900-01;KEGG=Os02t0725900-01
Chr02	irgsp1_rep	five_prime_UTR	30192427	30192488	.	-	.	Parent=Os02t0725900-01
Chr02	irgsp1_rep	CDS	30192405	30192426	.	-	0	Parent=Os02t0725900-01
Chr02	irgsp1_rep	CDS	30191726	30192264	.	-	2	Parent=Os02t0725900-01
Chr02	irgsp1_rep	three_prime_UTR	30191485	30191725	.	-	.	Parent=Os02t0725900-01
Chr02	irgsp1_rep	mRNA	30198593	30199848	.	-	.	ID=Os02t0726000-01;Name=Os02t0726000-01;Locus_id=Os02g0726000;CGSNL Gene Symbol=FLA21;CGSNL Gene Name=FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 21;Oryzabase Gene Symbol Synonym(s)=OsFLA21;Oryzabase Gene Name Synonym(s)=fasciclin-like AGP 21%2C fasciclin-like arabinogalactan protein 21;Note=FAS1 domain domain containing protein.;Transcript_evidence=AK099178 (DDBJ%2C Best hit),AK072936 (DDBJ%2C Best hit);ORF_evidence=Q06I73 (UniProt);InterPro=FAS1 domain (IPR000782);NIAS_FLcDNA=J023096L20,J023150F23;Oryzabase=11356;Expression=AK099178;TENOR=Os02t0726000-01;KEGG=Os02t0726000-01
Chr02	irgsp1_rep	five_prime_UTR	30199740	30199848	.	-	.	Parent=Os02t0726000-01
Chr02	irgsp1_rep	CDS	30198939	30199739	.	-	0	Parent=Os02t0726000-01
Chr02	irgsp1_rep	three_prime_UTR	30198593	30198938	.	-	.	Parent=Os02t0726000-01
Chr02	irgsp1_rep	mRNA	30206964	30208303	.	-	.	ID=Os02t0726300-01;Name=Os02t0726300-01;Locus_id=Os02g0726300;CGSNL Gene Symbol=DOF4;CGSNL Gene Name=DNA BINDING WITH ONE FINGER 4;Oryzabase Gene Symbol Synonym(s)=OsDof4%2C OsDof8%2C Dof8%2C OsDof-8%2C DOF8;Oryzabase Gene Name Synonym(s)=Dof zinc factor 8%2C Dof transcription factor 8;Note=Similar to AOBP (Ascorbate oxidase promoter-binding protein).;Transcript_evidence=AK101321 (DDBJ%2C Best hit),AK100892 (DDBJ%2C Best hit);ORF_evidence=Q58FK8 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C Dof-type (IPR003851);NIAS_FLcDNA=J033034E07,J023130J11;Oryzabase=8795;Expression=AK101321;TENOR=Os02t0726300-01;KEGG=Os02t0726300-01
Chr02	irgsp1_rep	five_prime_UTR	30208103	30208303	.	-	.	Parent=Os02t0726300-01
Chr02	irgsp1_rep	CDS	30207254	30208102	.	-	0	Parent=Os02t0726300-01
Chr02	irgsp1_rep	three_prime_UTR	30206964	30207253	.	-	.	Parent=Os02t0726300-01
Chr02	irgsp1_rep	mRNA	30206970	30208246	.	-	.	ID=Os02t0726300-03;Name=Os02t0726300-03;Locus_id=Os02g0726300;CGSNL Gene Symbol=DOF4;CGSNL Gene Name=DNA BINDING WITH ONE FINGER 4;Oryzabase Gene Symbol Synonym(s)=OsDof4%2C OsDof8%2C Dof8%2C OsDof-8%2C DOF8;Oryzabase Gene Name Synonym(s)=Dof zinc factor 8%2C Dof transcription factor 8;Note=Similar to AOBP (Ascorbate oxidase promoter-binding protein).;Transcript_evidence=AK061000 (DDBJ%2C Best hit);ORF_evidence=Q58FK8 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C Dof-type (IPR003851);NIAS_FLcDNA=006-203-F09;Oryzabase=8795;Expression=AK061000;TENOR=Os02t0726300-03;KEGG=Os02t0726300-03
Chr02	irgsp1_rep	five_prime_UTR	30208103	30208246	.	-	.	Parent=Os02t0726300-03
Chr02	irgsp1_rep	CDS	30207254	30208102	.	-	0	Parent=Os02t0726300-03
Chr02	irgsp1_rep	three_prime_UTR	30206970	30207253	.	-	.	Parent=Os02t0726300-03
Chr02	irgsp1_rep	mRNA	30220530	30223911	.	+	.	ID=Os02t0726400-01;Name=Os02t0726400-01;Locus_id=Os02g0726400;Note=BSD domain containing protein.;Transcript_evidence=AK101892 (DDBJ%2C Best hit);ORF_evidence=B4FWY5 (UniProt);InterPro=BSD (IPR005607);NIAS_FLcDNA=J033070O19;Expression=AK101892;TENOR=Os02t0726400-01;KEGG=Os02t0726400-01
Chr02	irgsp1_rep	five_prime_UTR	30220530	30220692	.	+	.	Parent=Os02t0726400-01
Chr02	irgsp1_rep	CDS	30220693	30221074	.	+	0	Parent=Os02t0726400-01
Chr02	irgsp1_rep	CDS	30221149	30221249	.	+	2	Parent=Os02t0726400-01
Chr02	irgsp1_rep	CDS	30222187	30222284	.	+	0	Parent=Os02t0726400-01
Chr02	irgsp1_rep	CDS	30222955	30223163	.	+	1	Parent=Os02t0726400-01
Chr02	irgsp1_rep	CDS	30223261	30223313	.	+	2	Parent=Os02t0726400-01
Chr02	irgsp1_rep	CDS	30223576	30223644	.	+	0	Parent=Os02t0726400-01
Chr02	irgsp1_rep	three_prime_UTR	30223645	30223911	.	+	.	Parent=Os02t0726400-01
Chr02	irgsp1_rep	mRNA	30220541	30223053	.	+	.	ID=Os02t0726400-02;Name=Os02t0726400-02;Locus_id=Os02g0726400;Note=Similar to BSD domain containing protein.;Transcript_evidence=AK107913 (DDBJ%2C Best hit);ORF_evidence=B4FWY5 (UniProt);InterPro=BSD (IPR005607);NIAS_FLcDNA=002-134-G08;TENOR=Os02t0726400-02
Chr02	irgsp1_rep	five_prime_UTR	30220541	30220692	.	+	.	Parent=Os02t0726400-02
Chr02	irgsp1_rep	CDS	30220693	30221074	.	+	0	Parent=Os02t0726400-02
Chr02	irgsp1_rep	CDS	30221149	30221249	.	+	2	Parent=Os02t0726400-02
Chr02	irgsp1_rep	CDS	30222187	30222284	.	+	0	Parent=Os02t0726400-02
Chr02	irgsp1_rep	CDS	30222955	30223053	.	+	1	Parent=Os02t0726400-02
Chr02	irgsp1_rep	mRNA	30226674	30230625	.	+	.	ID=Os02t0726500-01;Name=Os02t0726500-01;Locus_id=Os02g0726500;Note=Protein of unknown function DUF246%2C plant domain containing protein.;Transcript_evidence=AK242878 (DDBJ%2C Best hit);ORF_evidence=Q9LMF6 (UniProt);InterPro=GDP-fucose protein O-fucosyltransferase (IPR019378),O-fucosyltransferase%2C plant (IPR024709);NIAS_FLcDNA=J090078J21;TENOR=Os02t0726500-01;KEGG=Os02t0726500-01
Chr02	irgsp1_rep	five_prime_UTR	30226674	30226961	.	+	.	Parent=Os02t0726500-01
Chr02	irgsp1_rep	CDS	30226962	30227274	.	+	0	Parent=Os02t0726500-01
Chr02	irgsp1_rep	CDS	30228200	30228267	.	+	2	Parent=Os02t0726500-01
Chr02	irgsp1_rep	CDS	30228358	30228446	.	+	0	Parent=Os02t0726500-01
Chr02	irgsp1_rep	CDS	30228554	30228719	.	+	1	Parent=Os02t0726500-01
Chr02	irgsp1_rep	CDS	30228803	30229092	.	+	0	Parent=Os02t0726500-01
Chr02	irgsp1_rep	CDS	30229199	30229403	.	+	1	Parent=Os02t0726500-01
Chr02	irgsp1_rep	CDS	30229520	30229677	.	+	0	Parent=Os02t0726500-01
Chr02	irgsp1_rep	CDS	30229859	30230102	.	+	1	Parent=Os02t0726500-01
Chr02	irgsp1_rep	three_prime_UTR	30230103	30230625	.	+	.	Parent=Os02t0726500-01
Chr02	irgsp1_rep	mRNA	30232315	30232896	.	+	.	ID=Os02t0726600-01;Name=Os02t0726600-01;Locus_id=Os02g0726600;Note=Similar to tic20 protein-related.;Transcript_evidence=AK064213 (DDBJ%2C Best hit);ORF_evidence=NP_566112.1 (RefSeq);InterPro=Uncharacterised protein family Ycf60 (IPR019109);NIAS_FLcDNA=002-104-F03;Expression=AK064213;TENOR=Os02t0726600-01;KEGG=Os02t0726600-01
Chr02	irgsp1_rep	CDS	30232315	30232725	.	+	0	Parent=Os02t0726600-01
Chr02	irgsp1_rep	three_prime_UTR	30232726	30232896	.	+	.	Parent=Os02t0726600-01
Chr02	irgsp1_rep	mRNA	30233286	30235221	.	-	.	ID=Os02t0726700-01;Name=Os02t0726700-01;Locus_id=Os02g0726700;Oryzabase Gene Symbol Synonym(s)=OsbHLH034;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 034;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=AK068228 (DDBJ%2C Best hit);ORF_evidence=B9F2H5 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J013148L19;Oryzabase=15325;Expression=AK068228;TENOR=Os02t0726700-01;KEGG=Os02t0726700-01
Chr02	irgsp1_rep	CDS	30234843	30235221	.	-	0	Parent=Os02t0726700-01
Chr02	irgsp1_rep	CDS	30234643	30234756	.	-	2	Parent=Os02t0726700-01
Chr02	irgsp1_rep	CDS	30234386	30234453	.	-	2	Parent=Os02t0726700-01
Chr02	irgsp1_rep	CDS	30234211	30234306	.	-	0	Parent=Os02t0726700-01
Chr02	irgsp1_rep	CDS	30234094	30234132	.	-	0	Parent=Os02t0726700-01
Chr02	irgsp1_rep	CDS	30233810	30233987	.	-	0	Parent=Os02t0726700-01
Chr02	irgsp1_rep	CDS	30233562	30233722	.	-	2	Parent=Os02t0726700-01
Chr02	irgsp1_rep	three_prime_UTR	30233286	30233561	.	-	.	Parent=Os02t0726700-01
Chr02	irgsp1_rep	mRNA	30233286	30235843	.	-	.	ID=Os02t0726700-02;Name=Os02t0726700-02;Locus_id=Os02g0726700;RAP-DB Gene Symbol Synonym(s)=OsbHLH034;RAP-DB Gene Name Synonym(s)=basic helix-loop-helix protein 034;Oryzabase Gene Symbol Synonym(s)=OsbHLH034;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 034;Note=Basic helix-loop-helix (bHLH)-type transcription factor%2C JA-mediated resistance response against rice bacterial blight;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Helix-loop-helix DNA-binding domain superfamily (IPR036638),Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);Manual Curation=May 20%2C 2020;Literature_PMID=32424468;Oryzabase=15325;Subcellular location=nucleus (GO:0005634)
Chr02	irgsp1_rep	five_prime_UTR	30235606	30235843	.	-	.	Parent=Os02t0726700-02
Chr02	irgsp1_rep	CDS	30235590	30235605	.	-	0	Parent=Os02t0726700-02
Chr02	irgsp1_rep	CDS	30235343	30235447	.	-	2	Parent=Os02t0726700-02
Chr02	irgsp1_rep	CDS	30234843	30235229	.	-	2	Parent=Os02t0726700-02
Chr02	irgsp1_rep	CDS	30234645	30234756	.	-	2	Parent=Os02t0726700-02
Chr02	irgsp1_rep	CDS	30234386	30234455	.	-	1	Parent=Os02t0726700-02
Chr02	irgsp1_rep	CDS	30234211	30234306	.	-	0	Parent=Os02t0726700-02
Chr02	irgsp1_rep	CDS	30234094	30234132	.	-	0	Parent=Os02t0726700-02
Chr02	irgsp1_rep	CDS	30233810	30233987	.	-	0	Parent=Os02t0726700-02
Chr02	irgsp1_rep	CDS	30233562	30233722	.	-	2	Parent=Os02t0726700-02
Chr02	irgsp1_rep	three_prime_UTR	30233286	30233561	.	-	.	Parent=Os02t0726700-02
Chr02	irgsp1_rep	mRNA	30234297	30235911	.	+	.	ID=Os02t0726833-01;Name=Os02t0726833-01;Locus_id=Os02g0726833;Note=Non-protein coding transcript.;Transcript_evidence=AK064674 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-115-E11;TENOR=Os02t0726833-01
Chr02	irgsp1_rep	exon	30234297	30235911	.	+	.	Parent=Os02t0726833-01
Chr02	irgsp1_rep	mRNA	30259579	30263449	.	-	.	ID=Os02t0727100-01;Name=Os02t0727100-01;Locus_id=Os02g0727100;Oryzabase Gene Symbol Synonym(s)=OsATL3;Oryzabase Gene Name Synonym(s)=amino acid transporter-like 3;Note=Amino acid transporter%2C transmembrane domain containing protein.;Transcript_evidence=AK069154 (DDBJ%2C Best hit);ORF_evidence=C3SA82 (UniProt);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=J023006P21;Oryzabase=18521;Expression=AK069154;TENOR=Os02t0727100-01;KEGG=Os02t0727100-01
Chr02	irgsp1_rep	five_prime_UTR	30263246	30263449	.	-	.	Parent=Os02t0727100-01
Chr02	irgsp1_rep	CDS	30262843	30263245	.	-	0	Parent=Os02t0727100-01
Chr02	irgsp1_rep	CDS	30262572	30262727	.	-	2	Parent=Os02t0727100-01
Chr02	irgsp1_rep	CDS	30262255	30262458	.	-	2	Parent=Os02t0727100-01
Chr02	irgsp1_rep	CDS	30261718	30262183	.	-	2	Parent=Os02t0727100-01
Chr02	irgsp1_rep	CDS	30259962	30260079	.	-	1	Parent=Os02t0727100-01
Chr02	irgsp1_rep	three_prime_UTR	30259579	30259961	.	-	.	Parent=Os02t0727100-01
Chr02	irgsp1_rep	mRNA	30260591	30261180	.	+	.	ID=Os02t0727200-00;Name=Os02t0727200-00;Locus_id=Os02g0727200;Note=Hypothetical gene.;Transcript_evidence=AK241167 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;TENOR=Os02t0727200-00;KEGG=Os02t0727200-00
Chr02	irgsp1_rep	five_prime_UTR	30260591	30260591	.	+	.	Parent=Os02t0727200-00
Chr02	irgsp1_rep	CDS	30260592	30260990	.	+	0	Parent=Os02t0727200-00
Chr02	irgsp1_rep	three_prime_UTR	30260991	30261180	.	+	.	Parent=Os02t0727200-00
Chr02	irgsp1_rep	mRNA	30266710	30271842	.	+	.	ID=Os02t0727300-01;Name=Os02t0727300-01;Locus_id=Os02g0727300;Oryzabase Gene Symbol Synonym(s)=OsPUB21;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 21%2C U-box protein 21;Note=Similar to Beta-catenin repeat family protein.;Transcript_evidence=AK065834 (DDBJ%2C Best hit);ORF_evidence=C3SA81 (UniProt);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),U box domain (IPR003613),Armadillo-like helical (IPR011989),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013036J09;Oryzabase=17813;TENOR=Os02t0727300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	30266710	30267657	.	+	.	Parent=Os02t0727300-01
Chr02	irgsp1_rep	CDS	30267658	30267670	.	+	0	Parent=Os02t0727300-01
Chr02	irgsp1_rep	CDS	30268041	30269017	.	+	2	Parent=Os02t0727300-01
Chr02	irgsp1_rep	CDS	30269118	30269427	.	+	0	Parent=Os02t0727300-01
Chr02	irgsp1_rep	CDS	30270068	30271704	.	+	2	Parent=Os02t0727300-01
Chr02	irgsp1_rep	three_prime_UTR	30271705	30271842	.	+	.	Parent=Os02t0727300-01
Chr02	irgsp1_rep	mRNA	30267341	30271899	.	+	.	ID=Os02t0727300-02;Name=Os02t0727300-02;Locus_id=Os02g0727300;Oryzabase Gene Symbol Synonym(s)=OsPUB21;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 21%2C U-box protein 21;Note=Similar to Beta-catenin repeat family protein.;Transcript_evidence=AK120552 (DDBJ%2C Best hit);ORF_evidence=C3SA81 (UniProt);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),U box domain (IPR003613),Armadillo-like helical (IPR011989),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013130C13;Oryzabase=17813;TENOR=Os02t0727300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	30267341	30267657	.	+	.	Parent=Os02t0727300-02
Chr02	irgsp1_rep	CDS	30267658	30267670	.	+	0	Parent=Os02t0727300-02
Chr02	irgsp1_rep	CDS	30268041	30269017	.	+	2	Parent=Os02t0727300-02
Chr02	irgsp1_rep	CDS	30269118	30269427	.	+	0	Parent=Os02t0727300-02
Chr02	irgsp1_rep	CDS	30270068	30271704	.	+	2	Parent=Os02t0727300-02
Chr02	irgsp1_rep	three_prime_UTR	30271705	30271899	.	+	.	Parent=Os02t0727300-02
Chr02	irgsp1_rep	mRNA	30268952	30271774	.	+	.	ID=Os02t0727300-03;Name=Os02t0727300-03;Locus_id=Os02g0727300;Oryzabase Gene Symbol Synonym(s)=OsPUB21;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 21%2C U-box protein 21;Note=Similar to ubiquitin-protein ligase.;Transcript_evidence=AK062565 (DDBJ%2C Best hit);ORF_evidence=C3SA81 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=001-045-F09;Oryzabase=17813;Expression=AK062565;TENOR=Os02t0727300-03;KEGG=Os02t0727300-03
Chr02	irgsp1_rep	CDS	30268952	30269017	.	+	0	Parent=Os02t0727300-03
Chr02	irgsp1_rep	CDS	30269118	30269427	.	+	0	Parent=Os02t0727300-03
Chr02	irgsp1_rep	CDS	30270068	30271704	.	+	2	Parent=Os02t0727300-03
Chr02	irgsp1_rep	three_prime_UTR	30271705	30271774	.	+	.	Parent=Os02t0727300-03
Chr02	irgsp1_rep	mRNA	30270907	30271853	.	+	.	ID=Os02t0727300-04;Name=Os02t0727300-04;Locus_id=Os02g0727300;Oryzabase Gene Symbol Synonym(s)=OsPUB21;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 21%2C U-box protein 21;Note=Similar to ubiquitin-protein ligase.;Transcript_evidence=AK060172 (DDBJ%2C Best hit);ORF_evidence=C3SA81 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=006-311-G05;Oryzabase=17813;Expression=AK060172;TENOR=Os02t0727300-04;KEGG=Os02t0727300-04
Chr02	irgsp1_rep	CDS	30270907	30271704	.	+	0	Parent=Os02t0727300-04
Chr02	irgsp1_rep	three_prime_UTR	30271705	30271853	.	+	.	Parent=Os02t0727300-04
Chr02	irgsp1_rep	mRNA	30269937	30271683	.	-	.	ID=Os02t0727400-01;Name=Os02t0727400-01;Locus_id=Os02g0727400;Note=Hypothetical protein.;Transcript_evidence=AK068514 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013152E08;Expression=AK068514;TENOR=Os02t0727400-01;KEGG=Os02t0727400-01
Chr02	irgsp1_rep	five_prime_UTR	30271008	30271683	.	-	.	Parent=Os02t0727400-01
Chr02	irgsp1_rep	CDS	30270447	30271007	.	-	0	Parent=Os02t0727400-01
Chr02	irgsp1_rep	three_prime_UTR	30269937	30270446	.	-	.	Parent=Os02t0727400-01
Chr02	irgsp1_rep	mRNA	30276458	30279263	.	-	.	ID=Os02t0727500-01;Name=Os02t0727500-01;Locus_id=Os02g0727500;Note=Protein of unknown function DUF1754%2C eukaryotic domain containing protein.;Transcript_evidence=AK121427 (DDBJ%2C Best hit);ORF_evidence=B9F2H0 (UniProt);InterPro=Protein of unknown function DUF1754%2C eukaryotic (IPR013865);NIAS_FLcDNA=J023136B21;TENOR=Os02t0727500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	30279262	30279263	.	-	.	Parent=Os02t0727500-01
Chr02	irgsp1_rep	CDS	30279120	30279261	.	-	0	Parent=Os02t0727500-01
Chr02	irgsp1_rep	CDS	30278347	30278499	.	-	2	Parent=Os02t0727500-01
Chr02	irgsp1_rep	CDS	30276637	30276896	.	-	2	Parent=Os02t0727500-01
Chr02	irgsp1_rep	three_prime_UTR	30276458	30276636	.	-	.	Parent=Os02t0727500-01
Chr02	irgsp1_rep	mRNA	30282358	30283676	.	+	.	ID=Os02t0727700-01;Name=Os02t0727700-01;Locus_id=Os02g0727700;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK241435 (DDBJ%2C Best hit);ORF_evidence=NP_001173140.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J065162E09;TENOR=Os02t0727700-01;KEGG=Os02t0727700-01
Chr02	irgsp1_rep	five_prime_UTR	30282358	30282483	.	+	.	Parent=Os02t0727700-01
Chr02	irgsp1_rep	CDS	30282484	30283419	.	+	0	Parent=Os02t0727700-01
Chr02	irgsp1_rep	three_prime_UTR	30283420	30283676	.	+	.	Parent=Os02t0727700-01
Chr02	irgsp1_rep	mRNA	30290562	30293723	.	-	.	ID=Os02t0727966-01;Name=Os02t0727966-01;Locus_id=Os02g0727966;Note=Conserved hypothetical protein.;Transcript_evidence=AK288504 (DDBJ%2C Best hit);ORF_evidence=XP_001767172.1 (RefSeq);NIAS_FLcDNA=J090041G18;TENOR=Os02t0727966-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	30291058	30293723	.	-	.	Parent=Os02t0727966-01
Chr02	irgsp1_rep	CDS	30290932	30291057	.	-	0	Parent=Os02t0727966-01
Chr02	irgsp1_rep	three_prime_UTR	30290562	30290931	.	-	.	Parent=Os02t0727966-01
Chr02	irgsp1_rep	mRNA	30295603	30296265	.	+	.	ID=Os02t0728001-00;Name=Os02t0728001-00;Locus_id=Os02g0728001;CGSNL Gene Symbol=BZIP22;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 22;Oryzabase Gene Symbol Synonym(s)=OsbZIP22;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 22;Note=Similar to G-box-binding factor 1.;Transcript_evidence=EU966739 (DDBJ);ORF_evidence=NP_001150379.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);Oryzabase=10111;TENOR=Os02t0728001-00;KEGG=Os02t0728001-00
Chr02	irgsp1_rep	five_prime_UTR	30295603	30295608	.	+	.	Parent=Os02t0728001-00
Chr02	irgsp1_rep	CDS	30295609	30296118	.	+	0	Parent=Os02t0728001-00
Chr02	irgsp1_rep	three_prime_UTR	30296119	30296265	.	+	.	Parent=Os02t0728001-00
Chr02	irgsp1_rep	mRNA	30294485	30306156	.	-	.	ID=Os02t0728100-01;Name=Os02t0728100-01;Locus_id=Os02g0728100;Oryzabase Gene Symbol Synonym(s)=OsProtIV1%2C PROTIV1;Oryzabase Gene Name Synonym(s)=Protease IV 1%2C PROTEASE IV 1;Note=Similar to SPPA%3B serine-type endopeptidase.;Transcript_evidence=AK289027 (DDBJ%2C Best hit);ORF_evidence=NP_565077.2 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: peptidase activity (GO:0008233);InterPro=Peptidase S49 (IPR002142),Peptidase S14/S49 (IPR023562);NIAS_FLcDNA=J090090L02;Oryzabase=20057;TENOR=Os02t0728100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	30306042	30306156	.	-	.	Parent=Os02t0728100-01
Chr02	irgsp1_rep	CDS	30305646	30306041	.	-	0	Parent=Os02t0728100-01
Chr02	irgsp1_rep	CDS	30305232	30305415	.	-	0	Parent=Os02t0728100-01
Chr02	irgsp1_rep	CDS	30305003	30305140	.	-	2	Parent=Os02t0728100-01
Chr02	irgsp1_rep	CDS	30304444	30304614	.	-	2	Parent=Os02t0728100-01
Chr02	irgsp1_rep	CDS	30304271	30304374	.	-	2	Parent=Os02t0728100-01
Chr02	irgsp1_rep	CDS	30302334	30302401	.	-	0	Parent=Os02t0728100-01
Chr02	irgsp1_rep	CDS	30301447	30301613	.	-	1	Parent=Os02t0728100-01
Chr02	irgsp1_rep	CDS	30300137	30300206	.	-	2	Parent=Os02t0728100-01
Chr02	irgsp1_rep	CDS	30299905	30300059	.	-	1	Parent=Os02t0728100-01
Chr02	irgsp1_rep	CDS	30299332	30299441	.	-	2	Parent=Os02t0728100-01
Chr02	irgsp1_rep	three_prime_UTR	30299254	30299331	.	-	.	Parent=Os02t0728100-01
Chr02	irgsp1_rep	three_prime_UTR	30298409	30298496	.	-	.	Parent=Os02t0728100-01
Chr02	irgsp1_rep	three_prime_UTR	30298195	30298338	.	-	.	Parent=Os02t0728100-01
Chr02	irgsp1_rep	three_prime_UTR	30297388	30297722	.	-	.	Parent=Os02t0728100-01
Chr02	irgsp1_rep	three_prime_UTR	30296967	30297046	.	-	.	Parent=Os02t0728100-01
Chr02	irgsp1_rep	three_prime_UTR	30294485	30296074	.	-	.	Parent=Os02t0728100-01
Chr02	irgsp1_rep	mRNA	30297219	30306139	.	-	.	ID=Os02t0728100-02;Name=Os02t0728100-02;Locus_id=Os02g0728100;Oryzabase Gene Symbol Synonym(s)=OsProtIV1%2C PROTIV1;Oryzabase Gene Name Synonym(s)=Protease IV 1%2C PROTEASE IV 1;Note=Peptidase S49 domain containing protein.;Transcript_evidence=AK070290 (DDBJ%2C Best hit);ORF_evidence=NP_565077.2 (RefSeq);GO=Biological Process: signal peptide processing (GO:0006465),Biological Process: proteolysis (GO:0006508),Cellular Component: integral to membrane (GO:0016021),Molecular Function: peptidase activity (GO:0008233);InterPro=Peptidase S49 (IPR002142),Peptidase S49%2C protease IV (IPR004634),Peptidase S49%2C SppA (IPR004635),Peptidase S14/S49 (IPR023562);NIAS_FLcDNA=J023048E15;Oryzabase=20057;Expression=AK070290;TENOR=Os02t0728100-02;KEGG=Os02t0728100-02 (EC:3.4.21.-)
Chr02	irgsp1_rep	five_prime_UTR	30306042	30306139	.	-	.	Parent=Os02t0728100-02
Chr02	irgsp1_rep	CDS	30305646	30306041	.	-	0	Parent=Os02t0728100-02
Chr02	irgsp1_rep	CDS	30305232	30305415	.	-	0	Parent=Os02t0728100-02
Chr02	irgsp1_rep	CDS	30305003	30305140	.	-	2	Parent=Os02t0728100-02
Chr02	irgsp1_rep	CDS	30304444	30304614	.	-	2	Parent=Os02t0728100-02
Chr02	irgsp1_rep	CDS	30304271	30304374	.	-	2	Parent=Os02t0728100-02
Chr02	irgsp1_rep	CDS	30302334	30302401	.	-	0	Parent=Os02t0728100-02
Chr02	irgsp1_rep	CDS	30301447	30301613	.	-	1	Parent=Os02t0728100-02
Chr02	irgsp1_rep	CDS	30300137	30300206	.	-	2	Parent=Os02t0728100-02
Chr02	irgsp1_rep	CDS	30299905	30300059	.	-	1	Parent=Os02t0728100-02
Chr02	irgsp1_rep	CDS	30299336	30299441	.	-	2	Parent=Os02t0728100-02
Chr02	irgsp1_rep	CDS	30298409	30298496	.	-	1	Parent=Os02t0728100-02
Chr02	irgsp1_rep	CDS	30298195	30298338	.	-	0	Parent=Os02t0728100-02
Chr02	irgsp1_rep	CDS	30297489	30297722	.	-	0	Parent=Os02t0728100-02
Chr02	irgsp1_rep	three_prime_UTR	30297219	30297488	.	-	.	Parent=Os02t0728100-02
Chr02	irgsp1_rep	mRNA	30310456	30313340	.	+	.	ID=Os02t0728300-00;Name=Os02t0728300-00;Locus_id=Os02g0728300;Note=Similar to ASC1-like protein 2.;Transcript_evidence=BT055435 (DDBJ);ORF_evidence=B6UA21 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=TRAM/LAG1/CLN8 homology domain (IPR006634),Longevity assurance%2C LAG1/LAC1 (IPR016439);TENOR=Os02t0728300-00;KEGG=Os02t0728300-00
Chr02	irgsp1_rep	CDS	30310456	30310806	.	+	0	Parent=Os02t0728300-00
Chr02	irgsp1_rep	CDS	30311188	30311414	.	+	0	Parent=Os02t0728300-00
Chr02	irgsp1_rep	CDS	30311542	30311697	.	+	1	Parent=Os02t0728300-00
Chr02	irgsp1_rep	CDS	30312400	30312585	.	+	1	Parent=Os02t0728300-00
Chr02	irgsp1_rep	CDS	30312691	30312875	.	+	1	Parent=Os02t0728300-00
Chr02	irgsp1_rep	CDS	30313078	30313109	.	+	2	Parent=Os02t0728300-00
Chr02	irgsp1_rep	three_prime_UTR	30313110	30313340	.	+	.	Parent=Os02t0728300-00
Chr02	irgsp1_rep	mRNA	30310596	30313421	.	-	.	ID=Os02t0728401-01;Name=Os02t0728401-01;Locus_id=Os02g0728401;Note=Hypothetical gene.;Transcript_evidence=AK241520 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065170K17;TENOR=Os02t0728401-01;KEGG=Os02t0728401-01
Chr02	irgsp1_rep	five_prime_UTR	30313281	30313421	.	-	.	Parent=Os02t0728401-01
Chr02	irgsp1_rep	CDS	30313078	30313280	.	-	0	Parent=Os02t0728401-01
Chr02	irgsp1_rep	CDS	30312809	30312875	.	-	1	Parent=Os02t0728401-01
Chr02	irgsp1_rep	three_prime_UTR	30312691	30312808	.	-	.	Parent=Os02t0728401-01
Chr02	irgsp1_rep	three_prime_UTR	30312400	30312585	.	-	.	Parent=Os02t0728401-01
Chr02	irgsp1_rep	three_prime_UTR	30311542	30311697	.	-	.	Parent=Os02t0728401-01
Chr02	irgsp1_rep	three_prime_UTR	30311188	30311414	.	-	.	Parent=Os02t0728401-01
Chr02	irgsp1_rep	three_prime_UTR	30310596	30310806	.	-	.	Parent=Os02t0728401-01
Chr02	irgsp1_rep	mRNA	30316143	30319805	.	-	.	ID=Os02t0728500-01;Name=Os02t0728500-01;Locus_id=Os02g0728500;Oryzabase Gene Symbol Synonym(s)=OsSERL3;Oryzabase Gene Name Synonym(s)=SERK-like gene 3;Note=Similar to BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1.;Transcript_evidence=AK073972 (DDBJ%2C Best hit);ORF_evidence=NP_001147975.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J033072J21;Oryzabase=13026;TENOR=Os02t0728500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	30319695	30319805	.	-	.	Parent=Os02t0728500-01
Chr02	irgsp1_rep	CDS	30319583	30319694	.	-	0	Parent=Os02t0728500-01
Chr02	irgsp1_rep	CDS	30319274	30319406	.	-	2	Parent=Os02t0728500-01
Chr02	irgsp1_rep	CDS	30319091	30319162	.	-	1	Parent=Os02t0728500-01
Chr02	irgsp1_rep	CDS	30318844	30318987	.	-	1	Parent=Os02t0728500-01
Chr02	irgsp1_rep	CDS	30318647	30318718	.	-	1	Parent=Os02t0728500-01
Chr02	irgsp1_rep	CDS	30318493	30318552	.	-	1	Parent=Os02t0728500-01
Chr02	irgsp1_rep	CDS	30318288	30318385	.	-	1	Parent=Os02t0728500-01
Chr02	irgsp1_rep	CDS	30317924	30318207	.	-	2	Parent=Os02t0728500-01
Chr02	irgsp1_rep	three_prime_UTR	30317609	30317923	.	-	.	Parent=Os02t0728500-01
Chr02	irgsp1_rep	three_prime_UTR	30316143	30317377	.	-	.	Parent=Os02t0728500-01
Chr02	irgsp1_rep	mRNA	30323406	30325666	.	-	.	ID=Os02t0728600-01;Name=Os02t0728600-01;Locus_id=Os02g0728600;Note=Similar to H/ACA ribonucleoprotein complex subunit 2.;Transcript_evidence=AK063054 (DDBJ%2C Best hit);ORF_evidence=B6THL0 (UniProt);GO=Cellular Component: nucleolus (GO:0005730),Molecular Function: RNA binding (GO:0003723);InterPro=H/ACA ribonucleoprotein complex%2C subunit Nhp2%2C eukaryote (IPR002415),Ribosomal protein L7Ae/L30e/S12e/Gadd45 (IPR004038),Ribosomal protein L7Ae/L8/Nhp2 family (IPR018492);NIAS_FLcDNA=001-110-F02;TENOR=Os02t0728600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	30325666	30325666	.	-	.	Parent=Os02t0728600-01
Chr02	irgsp1_rep	CDS	30325485	30325665	.	-	0	Parent=Os02t0728600-01
Chr02	irgsp1_rep	CDS	30325295	30325364	.	-	2	Parent=Os02t0728600-01
Chr02	irgsp1_rep	CDS	30324531	30324636	.	-	1	Parent=Os02t0728600-01
Chr02	irgsp1_rep	CDS	30323612	30323773	.	-	0	Parent=Os02t0728600-01
Chr02	irgsp1_rep	three_prime_UTR	30323406	30323611	.	-	.	Parent=Os02t0728600-01
Chr02	irgsp1_rep	mRNA	30325784	30329465	.	+	.	ID=Os02t0728700-01;Name=Os02t0728700-01;Locus_id=Os02g0728700;Note=Ribosomal RNA-processing protein 7 domain containing protein.;Transcript_evidence=AK109840 (DDBJ%2C Best hit);ORF_evidence=B9F2H9 (UniProt);InterPro=Ribosomal RNA-processing protein 7 (IPR024326);NIAS_FLcDNA=002-148-D12;Expression=AK109840;TENOR=Os02t0728700-01;KEGG=Os02t0728700-01
Chr02	irgsp1_rep	five_prime_UTR	30325784	30326143	.	+	.	Parent=Os02t0728700-01
Chr02	irgsp1_rep	CDS	30326144	30326159	.	+	0	Parent=Os02t0728700-01
Chr02	irgsp1_rep	CDS	30326250	30326390	.	+	2	Parent=Os02t0728700-01
Chr02	irgsp1_rep	CDS	30326765	30327079	.	+	2	Parent=Os02t0728700-01
Chr02	irgsp1_rep	CDS	30327229	30327315	.	+	2	Parent=Os02t0728700-01
Chr02	irgsp1_rep	CDS	30327414	30327560	.	+	2	Parent=Os02t0728700-01
Chr02	irgsp1_rep	CDS	30327953	30328050	.	+	2	Parent=Os02t0728700-01
Chr02	irgsp1_rep	CDS	30328377	30328587	.	+	0	Parent=Os02t0728700-01
Chr02	irgsp1_rep	CDS	30329096	30329181	.	+	2	Parent=Os02t0728700-01
Chr02	irgsp1_rep	three_prime_UTR	30329182	30329465	.	+	.	Parent=Os02t0728700-01
Chr02	irgsp1_rep	mRNA	30337274	30338879	.	-	.	ID=Os02t0728850-00;Name=Os02t0728850-00;Locus_id=Os02g0728850;Note=Non-protein coding transcript.;Transcript_evidence=BT019267 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0728850-00
Chr02	irgsp1_rep	exon	30338684	30338879	.	-	.	Parent=Os02t0728850-00
Chr02	irgsp1_rep	exon	30337460	30337593	.	-	.	Parent=Os02t0728850-00
Chr02	irgsp1_rep	exon	30337274	30337348	.	-	.	Parent=Os02t0728850-00
Chr02	irgsp1_rep	mRNA	30343011	30344467	.	+	.	ID=Os02t0729100-00;Name=Os02t0729100-00;Locus_id=Os02g0729100;Oryzabase Gene Symbol Synonym(s)=OsTBL54%2C TBL54;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 54;Note=Protein of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=AK375929 (DDBJ);ORF_evidence=NP_001048004.1 (RefSeq);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);Oryzabase=21509;TENOR=Os02t0729100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	30343011	30343011	.	+	.	Parent=Os02t0729100-00
Chr02	irgsp1_rep	CDS	30343012	30343476	.	+	0	Parent=Os02t0729100-00
Chr02	irgsp1_rep	CDS	30343558	30344109	.	+	0	Parent=Os02t0729100-00
Chr02	irgsp1_rep	CDS	30344211	30344444	.	+	0	Parent=Os02t0729100-00
Chr02	irgsp1_rep	three_prime_UTR	30344445	30344467	.	+	.	Parent=Os02t0729100-00
Chr02	irgsp1_rep	mRNA	30346452	30347793	.	-	.	ID=Os02t0729200-00;Name=Os02t0729200-00;Locus_id=Os02g0729200;Oryzabase Gene Symbol Synonym(s)=OsTBL55%2C TBL55;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 55;Note=Hypothetical conserved gene.;Transcript_evidence=BT061540 (DDBJ);ORF_evidence=Q6YWS1 (UniProt);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);Oryzabase=21510;TENOR=Os02t0729200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	30347320	30347793	.	-	0	Parent=Os02t0729200-00
Chr02	irgsp1_rep	CDS	30346463	30347236	.	-	0	Parent=Os02t0729200-00
Chr02	irgsp1_rep	three_prime_UTR	30346452	30346462	.	-	.	Parent=Os02t0729200-00
Chr02	irgsp1_rep	mRNA	30352710	30356478	.	-	.	ID=Os02t0729300-01;Name=Os02t0729300-01;Locus_id=Os02g0729300;Note=Zinc finger%2C CCHC retroviral-type domain containing protein.;Transcript_evidence=AK072350 (DDBJ%2C Best hit);ORF_evidence=B8AI06 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Zinc finger%2C CCHC retroviral-type (IPR013084);NIAS_FLcDNA=J023054H01;Expression=AK072350;TENOR=Os02t0729300-01;KEGG=Os02t0729300-01
Chr02	irgsp1_rep	five_prime_UTR	30356277	30356478	.	-	.	Parent=Os02t0729300-01
Chr02	irgsp1_rep	CDS	30354867	30356276	.	-	0	Parent=Os02t0729300-01
Chr02	irgsp1_rep	three_prime_UTR	30352710	30354866	.	-	.	Parent=Os02t0729300-01
Chr02	irgsp1_rep	mRNA	30357071	30359162	.	-	.	ID=Os02t0729350-00;Name=Os02t0729350-00;Locus_id=Os02g0729350;Note=Hypothetical conserved gene.;Transcript_evidence=CT835400 (DDBJ%2C Best hit);ORF_evidence=B9F2I1 (UniProt);TENOR=Os02t0729350-00;KEGG=Os02t0729350-00
Chr02	irgsp1_rep	five_prime_UTR	30358515	30359162	.	-	.	Parent=Os02t0729350-00
Chr02	irgsp1_rep	CDS	30358416	30358514	.	-	0	Parent=Os02t0729350-00
Chr02	irgsp1_rep	CDS	30357071	30357709	.	-	0	Parent=Os02t0729350-00
Chr02	irgsp1_rep	mRNA	30361908	30363528	.	-	.	ID=Os02t0729400-01;Name=Os02t0729400-01;Locus_id=Os02g0729400;CGSNL Gene Symbol=STR11;CGSNL Gene Name=SULFURTRANSFERASE 11;Oryzabase Gene Symbol Synonym(s)=OsStr11%2C OsCAS%2C Cas;Oryzabase Gene Name Synonym(s)=Sulfurtransferase 11%2C Calcium-Sensing Receptor;Note=Similar to Extracellular calcium sensing receptor.;Transcript_evidence=AK058726 (DDBJ%2C Best hit);ORF_evidence=Q6S3G1 (UniProt);InterPro=Rhodanese-like (IPR001763);NIAS_FLcDNA=001-019-F04;Oryzabase=12061;Expression=AK058726;TENOR=Os02t0729400-01;KEGG=Os02t0729400-01
Chr02	irgsp1_rep	CDS	30363499	30363528	.	-	0	Parent=Os02t0729400-01
Chr02	irgsp1_rep	CDS	30363164	30363397	.	-	0	Parent=Os02t0729400-01
Chr02	irgsp1_rep	CDS	30362884	30363076	.	-	0	Parent=Os02t0729400-01
Chr02	irgsp1_rep	CDS	30362645	30362786	.	-	2	Parent=Os02t0729400-01
Chr02	irgsp1_rep	CDS	30362421	30362552	.	-	1	Parent=Os02t0729400-01
Chr02	irgsp1_rep	CDS	30362065	30362329	.	-	1	Parent=Os02t0729400-01
Chr02	irgsp1_rep	three_prime_UTR	30361908	30362064	.	-	.	Parent=Os02t0729400-01
Chr02	irgsp1_rep	mRNA	30364802	30365092	.	+	.	ID=Os02t0729500-00;Name=Os02t0729500-00;Locus_id=Os02g0729500;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001048007.2 (RefSeq);TENOR=Os02t0729500-00;KEGG=Os02t0729500-00
Chr02	irgsp1_rep	CDS	30364802	30365092	.	+	0	Parent=Os02t0729500-00
Chr02	irgsp1_rep	mRNA	30381303	30383336	.	+	.	ID=Os02t0729700-01;Name=Os02t0729700-01;Locus_id=Os02g0729700;CGSNL Gene Symbol=HOX16;CGSNL Gene Name=HOMEOBOX GENE 16;Oryzabase Gene Symbol Synonym(s)=Oshox16%2C OsHox16;Oryzabase Gene Name Synonym(s)=rice homeobox gene 16%2C Homeobox-leucine zipper protein HOX16%2C Homeodomain transcription factor HOX16%2C HD-ZIP protein HOX16;Note=Similar to HAHB-7 (Fragment).;Transcript_evidence=AK119592 (DDBJ%2C Best hit);ORF_evidence=Q6YWR4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: transcription regulatory region sequence-specific DNA binding (GO:0000976),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Helix-turn-helix motif%2C lambda-like repressor (IPR000047),Homeobox (IPR001356),Leucine zipper%2C homeobox-associated (IPR003106),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Homeobox%2C conserved site (IPR017970);NIAS_FLcDNA=002-117-D05;Oryzabase=8452;Expression=AK119592;TENOR=Os02t0729700-01;KEGG=Os02t0729700-01
Chr02	irgsp1_rep	five_prime_UTR	30381303	30381844	.	+	.	Parent=Os02t0729700-01
Chr02	irgsp1_rep	CDS	30381845	30381959	.	+	0	Parent=Os02t0729700-01
Chr02	irgsp1_rep	CDS	30382060	30382199	.	+	2	Parent=Os02t0729700-01
Chr02	irgsp1_rep	CDS	30382312	30382551	.	+	0	Parent=Os02t0729700-01
Chr02	irgsp1_rep	CDS	30382664	30383200	.	+	0	Parent=Os02t0729700-01
Chr02	irgsp1_rep	three_prime_UTR	30383201	30383336	.	+	.	Parent=Os02t0729700-01
Chr02	irgsp1_rep	mRNA	30381800	30383486	.	+	.	ID=Os02t0729700-02;Name=Os02t0729700-02;Locus_id=Os02g0729700;CGSNL Gene Symbol=HOX16;CGSNL Gene Name=HOMEOBOX GENE 16;Oryzabase Gene Symbol Synonym(s)=Oshox16%2C OsHox16;Oryzabase Gene Name Synonym(s)=rice homeobox gene 16%2C Homeobox-leucine zipper protein HOX16%2C Homeodomain transcription factor HOX16%2C HD-ZIP protein HOX16;Note=Similar to HAHB-7 (Fragment).;Transcript_evidence=AK058364 (DDBJ%2C Best hit);ORF_evidence=B7F510 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: transcription regulatory region sequence-specific DNA binding (GO:0000976),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Helix-turn-helix motif%2C lambda-like repressor (IPR000047),Homeobox (IPR001356),Leucine zipper%2C homeobox-associated (IPR003106),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Homeobox%2C conserved site (IPR017970);NIAS_FLcDNA=001-014-F09;Oryzabase=8452;Expression=AK058364;TENOR=Os02t0729700-02;KEGG=Os02t0729700-02
Chr02	irgsp1_rep	five_prime_UTR	30381800	30381844	.	+	.	Parent=Os02t0729700-02
Chr02	irgsp1_rep	CDS	30381845	30381959	.	+	0	Parent=Os02t0729700-02
Chr02	irgsp1_rep	CDS	30382060	30382199	.	+	2	Parent=Os02t0729700-02
Chr02	irgsp1_rep	CDS	30382312	30382551	.	+	0	Parent=Os02t0729700-02
Chr02	irgsp1_rep	CDS	30382664	30383200	.	+	0	Parent=Os02t0729700-02
Chr02	irgsp1_rep	three_prime_UTR	30383201	30383486	.	+	.	Parent=Os02t0729700-02
Chr02	irgsp1_rep	mRNA	30381327	30383436	.	-	.	ID=Os02t0729801-00;Name=Os02t0729801-00;Locus_id=Os02g0729801;Note=Hypothetical protein.;Transcript_evidence=EU943321 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0729801-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	30383267	30383436	.	-	.	Parent=Os02t0729801-00
Chr02	irgsp1_rep	CDS	30382478	30383266	.	-	0	Parent=Os02t0729801-00
Chr02	irgsp1_rep	three_prime_UTR	30381327	30382477	.	-	.	Parent=Os02t0729801-00
Chr02	irgsp1_rep	mRNA	30392547	30396729	.	-	.	ID=Os02t0730000-01;Name=Os02t0730000-01;Locus_id=Os02g0730000;CGSNL Gene Symbol=ALDH2A;CGSNL Gene Name=ALDEHYDE DEHYDROGENASE 2A;Oryzabase Gene Symbol Synonym(s)=OsALDH2a%2C ALDH2a%2C Aldh2a%2C OsSTA73%2C OsALDH2B5%2C ALDH2B5;Oryzabase Gene Name Synonym(s)=aldehyde dehydrogenase 2a%2C Aldehyde dehydrogenase 2B5;Note=Similar to Mitochondrial aldehyde dehydrogenase.;Transcript_evidence=AK119320 (DDBJ%2C Best hit);ORF_evidence=Q7FWR0 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldehyde dehydrogenase domain (IPR015590),Aldehyde/histidinol dehydrogenase (IPR016161),Aldehyde dehydrogenase%2C N-terminal (IPR016162);NIAS_FLcDNA=001-130-H10;Oryzabase=6006;Expression=AK119320;TENOR=Os02t0730000-01;KEGG=Os02t0730000-01 (EC:1.2.1.3)
Chr02	irgsp1_rep	five_prime_UTR	30396550	30396729	.	-	.	Parent=Os02t0730000-01
Chr02	irgsp1_rep	CDS	30396450	30396549	.	-	0	Parent=Os02t0730000-01
Chr02	irgsp1_rep	CDS	30395509	30395667	.	-	2	Parent=Os02t0730000-01
Chr02	irgsp1_rep	CDS	30395219	30395424	.	-	2	Parent=Os02t0730000-01
Chr02	irgsp1_rep	three_prime_UTR	30394718	30395218	.	-	.	Parent=Os02t0730000-01
Chr02	irgsp1_rep	three_prime_UTR	30394473	30394646	.	-	.	Parent=Os02t0730000-01
Chr02	irgsp1_rep	three_prime_UTR	30394236	30394373	.	-	.	Parent=Os02t0730000-01
Chr02	irgsp1_rep	three_prime_UTR	30394016	30394153	.	-	.	Parent=Os02t0730000-01
Chr02	irgsp1_rep	three_prime_UTR	30393875	30393936	.	-	.	Parent=Os02t0730000-01
Chr02	irgsp1_rep	three_prime_UTR	30392547	30393784	.	-	.	Parent=Os02t0730000-01
Chr02	irgsp1_rep	mRNA	30393278	30396646	.	-	.	ID=Os02t0730000-02;Name=Os02t0730000-02;Locus_id=Os02g0730000;CGSNL Gene Symbol=ALDH2A;CGSNL Gene Name=ALDEHYDE DEHYDROGENASE 2A;Oryzabase Gene Symbol Synonym(s)=OsALDH2a%2C ALDH2a%2C Aldh2a%2C OsSTA73%2C OsALDH2B5%2C ALDH2B5;Oryzabase Gene Name Synonym(s)=aldehyde dehydrogenase 2a%2C Aldehyde dehydrogenase 2B5;Note=Mitochondrial aldehyde dehydrogenase ALDH2a.;Transcript_evidence=AK121610 (DDBJ%2C Best hit);ORF_evidence=Q7FWR0 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620);InterPro=Aldehyde dehydrogenase domain (IPR015590),Aldehyde dehydrogenase%2C conserved site (IPR016160),Aldehyde/histidinol dehydrogenase (IPR016161),Aldehyde dehydrogenase%2C N-terminal (IPR016162),Aldehyde dehydrogenase%2C C-terminal (IPR016163);NIAS_FLcDNA=J033042M19;Oryzabase=6006;Expression=AK121610;TENOR=Os02t0730000-02;KEGG=Os02t0730000-02 (EC:1.2.1.3)
Chr02	irgsp1_rep	five_prime_UTR	30396550	30396646	.	-	.	Parent=Os02t0730000-02
Chr02	irgsp1_rep	CDS	30396450	30396549	.	-	0	Parent=Os02t0730000-02
Chr02	irgsp1_rep	CDS	30395509	30395667	.	-	2	Parent=Os02t0730000-02
Chr02	irgsp1_rep	CDS	30395282	30395424	.	-	2	Parent=Os02t0730000-02
Chr02	irgsp1_rep	CDS	30394718	30395191	.	-	0	Parent=Os02t0730000-02
Chr02	irgsp1_rep	CDS	30394473	30394646	.	-	0	Parent=Os02t0730000-02
Chr02	irgsp1_rep	CDS	30394236	30394373	.	-	0	Parent=Os02t0730000-02
Chr02	irgsp1_rep	CDS	30394016	30394153	.	-	0	Parent=Os02t0730000-02
Chr02	irgsp1_rep	CDS	30393875	30393936	.	-	0	Parent=Os02t0730000-02
Chr02	irgsp1_rep	CDS	30393511	30393784	.	-	1	Parent=Os02t0730000-02
Chr02	irgsp1_rep	three_prime_UTR	30393278	30393510	.	-	.	Parent=Os02t0730000-02
Chr02	irgsp1_rep	mRNA	30392816	30395045	.	+	.	ID=Os02t0730050-00;Name=Os02t0730050-00;Locus_id=Os02g0730050;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=FP097888 (DDBJ);ORF_evidence=NP_001048009.2 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os02t0730050-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	30392816	30393211	.	+	0	Parent=Os02t0730050-00
Chr02	irgsp1_rep	CDS	30394776	30395045	.	+	0	Parent=Os02t0730050-00
Chr02	irgsp1_rep	mRNA	30393400	30394169	.	+	.	ID=Os02t0730075-00;Name=Os02t0730075-00;Locus_id=Os02g0730075;Note=Hypothetical protein.;Transcript_evidence=EU970913 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0730075-00
Chr02	irgsp1_rep	five_prime_UTR	30393400	30393468	.	+	.	Parent=Os02t0730075-00
Chr02	irgsp1_rep	CDS	30393469	30393801	.	+	0	Parent=Os02t0730075-00
Chr02	irgsp1_rep	three_prime_UTR	30393802	30394169	.	+	.	Parent=Os02t0730075-00
Chr02	irgsp1_rep	mRNA	30398551	30399887	.	-	.	ID=Os02t0730100-00;Name=Os02t0730100-00;Locus_id=Os02g0730100;Note=Similar to Pre-mRNA processing ribonucleoprotein%2C binding region%3B NOSIC.;Transcript_evidence=FP099461 (DDBJ);ORF_evidence=A2Q2G1 (UniProt);InterPro=Prp31 C-terminal (IPR019175);TENOR=Os02t0730100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	30399776	30399887	.	-	0	Parent=Os02t0730100-00
Chr02	irgsp1_rep	CDS	30399562	30399664	.	-	2	Parent=Os02t0730100-00
Chr02	irgsp1_rep	CDS	30399018	30399093	.	-	1	Parent=Os02t0730100-00
Chr02	irgsp1_rep	CDS	30398551	30398703	.	-	0	Parent=Os02t0730100-00
Chr02	irgsp1_rep	mRNA	30418498	30423139	.	+	.	ID=Os02t0730300-01;Name=Os02t0730300-01;Locus_id=Os02g0730300;CGSNL Gene Symbol=HAK25;CGSNL Gene Name=HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 25;Oryzabase Gene Symbol Synonym(s)=OsHAK25;Oryzabase Gene Name Synonym(s)=High-affinity Potassium(K+) Transporter 25%2C Potassium transporter 25;Note=Similar to Potassium transporter HAK3p (Fragment).;Transcript_evidence=AK111629 (DDBJ%2C Best hit),AK098897 (DDBJ%2C Best hit);ORF_evidence=Q6YWQ4 (UniProt);GO=Biological Process: potassium ion transmembrane transport (GO:0071805),Cellular Component: membrane (GO:0016020),Molecular Function: potassium ion transmembrane transporter activity (GO:0015079);InterPro=K+ potassium transporter (IPR003855);NIAS_FLcDNA=J013115O13,J013002A24;Oryzabase=8679;TENOR=Os02t0730300-01
Chr02	irgsp1_rep	five_prime_UTR	30418498	30418651	.	+	.	Parent=Os02t0730300-01
Chr02	irgsp1_rep	five_prime_UTR	30418958	30419039	.	+	.	Parent=Os02t0730300-01
Chr02	irgsp1_rep	CDS	30419040	30419084	.	+	0	Parent=Os02t0730300-01
Chr02	irgsp1_rep	CDS	30419201	30419684	.	+	0	Parent=Os02t0730300-01
Chr02	irgsp1_rep	CDS	30419808	30419861	.	+	2	Parent=Os02t0730300-01
Chr02	irgsp1_rep	CDS	30420036	30420296	.	+	2	Parent=Os02t0730300-01
Chr02	irgsp1_rep	CDS	30420398	30420450	.	+	2	Parent=Os02t0730300-01
Chr02	irgsp1_rep	CDS	30421098	30421221	.	+	0	Parent=Os02t0730300-01
Chr02	irgsp1_rep	CDS	30421330	30421584	.	+	2	Parent=Os02t0730300-01
Chr02	irgsp1_rep	CDS	30421678	30422084	.	+	2	Parent=Os02t0730300-01
Chr02	irgsp1_rep	CDS	30422168	30422797	.	+	0	Parent=Os02t0730300-01
Chr02	irgsp1_rep	three_prime_UTR	30422798	30423139	.	+	.	Parent=Os02t0730300-01
Chr02	irgsp1_rep	mRNA	30421533	30423103	.	+	.	ID=Os02t0730300-02;Name=Os02t0730300-02;Locus_id=Os02g0730300;CGSNL Gene Symbol=HAK25;CGSNL Gene Name=HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 25;Oryzabase Gene Symbol Synonym(s)=OsHAK25;Oryzabase Gene Name Synonym(s)=High-affinity Potassium(K+) Transporter 25%2C Potassium transporter 25;Note=Similar to Potassium transporter 25.;Transcript_evidence=AK112036 (DDBJ%2C Best hit);ORF_evidence=Q6YWQ4 (UniProt);GO=Biological Process: potassium ion transmembrane transport (GO:0071805),Cellular Component: membrane (GO:0016020),Molecular Function: potassium ion transmembrane transporter activity (GO:0015079);InterPro=K+ potassium transporter (IPR003855);NIAS_FLcDNA=001-042-A10;Oryzabase=8679;Expression=AK112036;TENOR=Os02t0730300-02;KEGG=Os02t0730300-02
Chr02	irgsp1_rep	CDS	30421533	30421584	.	+	0	Parent=Os02t0730300-02
Chr02	irgsp1_rep	CDS	30421678	30422084	.	+	2	Parent=Os02t0730300-02
Chr02	irgsp1_rep	CDS	30422168	30422797	.	+	0	Parent=Os02t0730300-02
Chr02	irgsp1_rep	three_prime_UTR	30422798	30423103	.	+	.	Parent=Os02t0730300-02
Chr02	irgsp1_rep	mRNA	30421318	30422086	.	-	.	ID=Os02t0730350-00;Name=Os02t0730350-00;Locus_id=Os02g0730350;Note=Non-protein coding transcript.;Transcript_evidence=EU967027 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0730350-00
Chr02	irgsp1_rep	exon	30421318	30422086	.	-	.	Parent=Os02t0730350-00
Chr02	irgsp1_rep	mRNA	30427788	30431737	.	+	.	ID=Os02t0730400-01;Name=Os02t0730400-01;Locus_id=Os02g0730400;Note=Six-bladed beta-propeller%2C TolB-like domain containing protein.;Transcript_evidence=AK101253 (DDBJ%2C Best hit);ORF_evidence=XP_002888763.1 (RefSeq);InterPro=Six-bladed beta-propeller%2C TolB-like (IPR011042);NIAS_FLcDNA=J033032F08;Expression=AK101253;TENOR=Os02t0730400-01;KEGG=Os02t0730400-01
Chr02	irgsp1_rep	five_prime_UTR	30427788	30427926	.	+	.	Parent=Os02t0730400-01
Chr02	irgsp1_rep	CDS	30427927	30428032	.	+	0	Parent=Os02t0730400-01
Chr02	irgsp1_rep	CDS	30428142	30428222	.	+	2	Parent=Os02t0730400-01
Chr02	irgsp1_rep	CDS	30428318	30428494	.	+	2	Parent=Os02t0730400-01
Chr02	irgsp1_rep	CDS	30429136	30429306	.	+	2	Parent=Os02t0730400-01
Chr02	irgsp1_rep	CDS	30429746	30429955	.	+	2	Parent=Os02t0730400-01
Chr02	irgsp1_rep	CDS	30430141	30430229	.	+	2	Parent=Os02t0730400-01
Chr02	irgsp1_rep	CDS	30430825	30431517	.	+	0	Parent=Os02t0730400-01
Chr02	irgsp1_rep	three_prime_UTR	30431518	30431737	.	+	.	Parent=Os02t0730400-01
Chr02	irgsp1_rep	mRNA	30430178	30431739	.	+	.	ID=Os02t0730400-02;Name=Os02t0730400-02;Locus_id=Os02g0730400;Note=Hypothetical conserved gene.;Transcript_evidence=AK058253 (DDBJ%2C Best hit);ORF_evidence=A2X987 (UniProt);NIAS_FLcDNA=001-012-C09;Expression=AK058253;TENOR=Os02t0730400-02;KEGG=Os02t0730400-02
Chr02	irgsp1_rep	five_prime_UTR	30430178	30430178	.	+	.	Parent=Os02t0730400-02
Chr02	irgsp1_rep	CDS	30430179	30430229	.	+	0	Parent=Os02t0730400-02
Chr02	irgsp1_rep	CDS	30430825	30431517	.	+	0	Parent=Os02t0730400-02
Chr02	irgsp1_rep	three_prime_UTR	30431518	30431739	.	+	.	Parent=Os02t0730400-02
Chr02	irgsp1_rep	mRNA	30427792	30429206	.	-	.	ID=Os02t0730450-00;Name=Os02t0730450-00;Locus_id=Os02g0730450;Note=Conserved hypothetical protein.;Transcript_evidence=EU957923 (DDBJ);ORF_evidence=NP_001143237.1 (RefSeq);TENOR=Os02t0730450-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	30429182	30429206	.	-	.	Parent=Os02t0730450-00
Chr02	irgsp1_rep	CDS	30429129	30429181	.	-	0	Parent=Os02t0730450-00
Chr02	irgsp1_rep	CDS	30427792	30428488	.	-	1	Parent=Os02t0730450-00
Chr02	irgsp1_rep	mRNA	30432264	30434086	.	-	.	ID=Os02t0730500-01;Name=Os02t0730500-01;Locus_id=Os02g0730500;Note=Fcf2 pre-rRNA processing domain containing protein.;Transcript_evidence=AK070160 (DDBJ%2C Best hit),AK059941 (DDBJ%2C Best hit);ORF_evidence=A2X988 (UniProt);InterPro=Fcf2 pre-rRNA processing (IPR014810);NIAS_FLcDNA=J023046D09,006-210-F08;Expression=AK070160;TENOR=Os02t0730500-01;KEGG=Os02t0730500-01
Chr02	irgsp1_rep	five_prime_UTR	30433932	30434086	.	-	.	Parent=Os02t0730500-01
Chr02	irgsp1_rep	CDS	30433705	30433931	.	-	0	Parent=Os02t0730500-01
Chr02	irgsp1_rep	CDS	30433540	30433600	.	-	1	Parent=Os02t0730500-01
Chr02	irgsp1_rep	CDS	30433013	30433087	.	-	0	Parent=Os02t0730500-01
Chr02	irgsp1_rep	CDS	30432801	30432916	.	-	0	Parent=Os02t0730500-01
Chr02	irgsp1_rep	CDS	30432539	30432647	.	-	1	Parent=Os02t0730500-01
Chr02	irgsp1_rep	three_prime_UTR	30432264	30432538	.	-	.	Parent=Os02t0730500-01
Chr02	irgsp1_rep	mRNA	30435012	30437515	.	+	.	ID=Os02t0730600-00;Name=Os02t0730600-00;Locus_id=Os02g0730600;CGSNL Gene Symbol=ALMT3;CGSNL Gene Name=ALUMINUM-ACTIVATED MALATE TRANSPORTER 3;Oryzabase Gene Symbol Synonym(s)=OsSTA74%2C OsALMT3;Oryzabase Gene Name Synonym(s)=Aluminum-activated malate transporter 3;Note=Similar to predicted protein.;Transcript_evidence=AK356354 (DDBJ);ORF_evidence=NP_188473.1 (RefSeq);GO=Biological Process: response to aluminum ion (GO:0010044);InterPro=Malate transporter%2C aliminium toerance (IPR020966);Oryzabase=19374,22152;TENOR=Os02t0730600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	30435012	30435027	.	+	.	Parent=Os02t0730600-00
Chr02	irgsp1_rep	CDS	30435028	30435397	.	+	0	Parent=Os02t0730600-00
Chr02	irgsp1_rep	CDS	30435722	30435859	.	+	2	Parent=Os02t0730600-00
Chr02	irgsp1_rep	CDS	30435965	30436234	.	+	2	Parent=Os02t0730600-00
Chr02	irgsp1_rep	CDS	30436351	30436490	.	+	2	Parent=Os02t0730600-00
Chr02	irgsp1_rep	CDS	30436574	30436720	.	+	0	Parent=Os02t0730600-00
Chr02	irgsp1_rep	CDS	30436826	30437515	.	+	0	Parent=Os02t0730600-00
Chr02	irgsp1_rep	mRNA	30437958	30441460	.	-	.	ID=Os02t0730700-02;Name=Os02t0730700-02;Locus_id=Os02g0730700;Note=Peptidase A1 domain containing protein.;Transcript_evidence=AK068664 (DDBJ%2C Best hit),AK072199 (DDBJ%2C Best hit);ORF_evidence=B8AI13 (UniProt);NIAS_FLcDNA=J013159L17,J013161I06;Expression=AK068664;TENOR=Os02t0730700-02;KEGG=Os02t0730700-02
Chr02	irgsp1_rep	five_prime_UTR	30441395	30441460	.	-	.	Parent=Os02t0730700-02
Chr02	irgsp1_rep	CDS	30440793	30441394	.	-	0	Parent=Os02t0730700-02
Chr02	irgsp1_rep	CDS	30440164	30440281	.	-	1	Parent=Os02t0730700-02
Chr02	irgsp1_rep	CDS	30439719	30439942	.	-	0	Parent=Os02t0730700-02
Chr02	irgsp1_rep	CDS	30439366	30439602	.	-	1	Parent=Os02t0730700-02
Chr02	irgsp1_rep	CDS	30439039	30439192	.	-	1	Parent=Os02t0730700-02
Chr02	irgsp1_rep	CDS	30438875	30438957	.	-	0	Parent=Os02t0730700-02
Chr02	irgsp1_rep	CDS	30438643	30438757	.	-	1	Parent=Os02t0730700-02
Chr02	irgsp1_rep	CDS	30438458	30438530	.	-	0	Parent=Os02t0730700-02
Chr02	irgsp1_rep	CDS	30438221	30438336	.	-	2	Parent=Os02t0730700-02
Chr02	irgsp1_rep	three_prime_UTR	30437958	30438220	.	-	.	Parent=Os02t0730700-02
Chr02	irgsp1_rep	mRNA	30438180	30441229	.	+	.	ID=Os02t0730725-00;Name=Os02t0730725-00;Locus_id=Os02g0730725;Note=Hypothetical protein.;Transcript_evidence=tplb0046c10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0730725-00
Chr02	irgsp1_rep	five_prime_UTR	30438180	30438369	.	+	.	Parent=Os02t0730725-00
Chr02	irgsp1_rep	five_prime_UTR	30438600	30438737	.	+	.	Parent=Os02t0730725-00
Chr02	irgsp1_rep	five_prime_UTR	30438947	30439179	.	+	.	Parent=Os02t0730725-00
Chr02	irgsp1_rep	five_prime_UTR	30439354	30439600	.	+	.	Parent=Os02t0730725-00
Chr02	irgsp1_rep	five_prime_UTR	30439717	30439938	.	+	.	Parent=Os02t0730725-00
Chr02	irgsp1_rep	five_prime_UTR	30440156	30440267	.	+	.	Parent=Os02t0730725-00
Chr02	irgsp1_rep	CDS	30440268	30440297	.	+	0	Parent=Os02t0730725-00
Chr02	irgsp1_rep	CDS	30440936	30441199	.	+	0	Parent=Os02t0730725-00
Chr02	irgsp1_rep	three_prime_UTR	30441200	30441229	.	+	.	Parent=Os02t0730725-00
Chr02	irgsp1_rep	mRNA	30442598	30444455	.	-	.	ID=Os02t0730751-00;Name=Os02t0730751-00;Locus_id=Os02g0730751;Note=Hypothetical protein.;Transcript_evidence=BT088173 (DDBJ);ORF_evidence=GeneMark;TENOR=Os02t0730751-00
Chr02	irgsp1_rep	five_prime_UTR	30444302	30444455	.	-	.	Parent=Os02t0730751-00
Chr02	irgsp1_rep	CDS	30444249	30444301	.	-	0	Parent=Os02t0730751-00
Chr02	irgsp1_rep	CDS	30442598	30442849	.	-	1	Parent=Os02t0730751-00
Chr02	irgsp1_rep	mRNA	30444816	30447866	.	-	.	ID=Os02t0730775-00;Name=Os02t0730775-00;Locus_id=Os02g0730775;Note=Hypothetical protein.;Transcript_evidence=tplb0052l03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0730775-00
Chr02	irgsp1_rep	five_prime_UTR	30447618	30447866	.	-	.	Parent=Os02t0730775-00
Chr02	irgsp1_rep	five_prime_UTR	30447418	30447531	.	-	.	Parent=Os02t0730775-00
Chr02	irgsp1_rep	five_prime_UTR	30447275	30447325	.	-	.	Parent=Os02t0730775-00
Chr02	irgsp1_rep	five_prime_UTR	30446717	30446807	.	-	.	Parent=Os02t0730775-00
Chr02	irgsp1_rep	five_prime_UTR	30446180	30446248	.	-	.	Parent=Os02t0730775-00
Chr02	irgsp1_rep	five_prime_UTR	30445979	30446059	.	-	.	Parent=Os02t0730775-00
Chr02	irgsp1_rep	five_prime_UTR	30445629	30445887	.	-	.	Parent=Os02t0730775-00
Chr02	irgsp1_rep	five_prime_UTR	30445390	30445460	.	-	.	Parent=Os02t0730775-00
Chr02	irgsp1_rep	CDS	30445380	30445389	.	-	0	Parent=Os02t0730775-00
Chr02	irgsp1_rep	CDS	30445061	30445296	.	-	2	Parent=Os02t0730775-00
Chr02	irgsp1_rep	three_prime_UTR	30444816	30445060	.	-	.	Parent=Os02t0730775-00
Chr02	irgsp1_rep	mRNA	30444949	30448020	.	+	.	ID=Os02t0730800-01;Name=Os02t0730800-01;Locus_id=Os02g0730800;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK066980 (DDBJ%2C Best hit);ORF_evidence=B8AI14 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013093M05;Expression=AK066980;TENOR=Os02t0730800-01;KEGG=Os02t0730800-01
Chr02	irgsp1_rep	five_prime_UTR	30444949	30444958	.	+	.	Parent=Os02t0730800-01
Chr02	irgsp1_rep	CDS	30444959	30445281	.	+	0	Parent=Os02t0730800-01
Chr02	irgsp1_rep	CDS	30445366	30445463	.	+	1	Parent=Os02t0730800-01
Chr02	irgsp1_rep	CDS	30445632	30445878	.	+	2	Parent=Os02t0730800-01
Chr02	irgsp1_rep	CDS	30445965	30446062	.	+	1	Parent=Os02t0730800-01
Chr02	irgsp1_rep	CDS	30446183	30446248	.	+	2	Parent=Os02t0730800-01
Chr02	irgsp1_rep	CDS	30446723	30446791	.	+	2	Parent=Os02t0730800-01
Chr02	irgsp1_rep	CDS	30447259	30447327	.	+	2	Parent=Os02t0730800-01
Chr02	irgsp1_rep	CDS	30447420	30447526	.	+	2	Parent=Os02t0730800-01
Chr02	irgsp1_rep	CDS	30447620	30447742	.	+	0	Parent=Os02t0730800-01
Chr02	irgsp1_rep	three_prime_UTR	30447743	30448020	.	+	.	Parent=Os02t0730800-01
Chr02	irgsp1_rep	mRNA	30448000	30449510	.	-	.	ID=Os02t0730900-00;Name=Os02t0730900-00;Locus_id=Os02g0730900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=tplb0054c14 (Wheat FLcDNA);ORF_evidence=NP_001048017.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os02t0730900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	30449509	30449510	.	-	.	Parent=Os02t0730900-00
Chr02	irgsp1_rep	CDS	30448042	30449508	.	-	0	Parent=Os02t0730900-00
Chr02	irgsp1_rep	three_prime_UTR	30448000	30448041	.	-	.	Parent=Os02t0730900-00
Chr02	irgsp1_rep	mRNA	30449574	30451465	.	-	.	ID=Os02t0731050-01;Name=Os02t0731050-01;Locus_id=Os02g0731050;Note=Non-protein coding transcript.;Transcript_evidence=AK288395 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090027N13;TENOR=Os02t0731050-01
Chr02	irgsp1_rep	exon	30449574	30451465	.	-	.	Parent=Os02t0731050-01
Chr02	irgsp1_rep	mRNA	30456666	30462759	.	+	.	ID=Os02t0731200-01;Name=Os02t0731200-01;Locus_id=Os02g0731200;RAP-DB Gene Symbol Synonym(s)=OsMADS57;RAP-DB Gene Name Synonym(s)=MADS-box transcription factor 57;CGSNL Gene Symbol=MADS57;CGSNL Gene Name=MADS BOX GENE 57;Oryzabase Gene Symbol Synonym(s)=OsMADS57%2C MADS-57;Oryzabase Gene Name Synonym(s)=MADS box gene57%2C MADS-box transcription factor 57;Note=MADS-box transcription factor%2C Cold tolerance%2C Control of tillering;Transcript_evidence=AK241644;ORF_evidence=Q6Z6W2;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Biological Process: positive regulation of transcription from RNA polymerase II promoter (GO:0045944),Molecular Function: RNA polymerase II regulatory region sequence-specific DNA binding (GO:0000977),Molecular Function: DNA binding (GO:0003677),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700),Molecular Function: protein dimerization activity (GO:0046983),Cellular Component: nucleus (GO:0005634);InterPro=Transcription factor%2C MADS-box superfamily (IPR036879),Transcription factor%2C MADS-box (IPR002100),MADS MEF2-like (IPR033896),Transcription factor%2C K-box (IPR002487);NIAS_FLcDNA=J065189M04;Manual Curation=January 29%2C 2018;Literature_PMID=29364524,23463009;Oryzabase=3106;TENOR=Os02t0731200-01;KEGG=Os02t0731200-01;Subcellular location=nucleus (GO:0005634)
Chr02	irgsp1_rep	five_prime_UTR	30456666	30456999	.	+	.	Parent=Os02t0731200-01
Chr02	irgsp1_rep	CDS	30457000	30457181	.	+	0	Parent=Os02t0731200-01
Chr02	irgsp1_rep	CDS	30458344	30458419	.	+	1	Parent=Os02t0731200-01
Chr02	irgsp1_rep	CDS	30461176	30461237	.	+	0	Parent=Os02t0731200-01
Chr02	irgsp1_rep	CDS	30461673	30461772	.	+	1	Parent=Os02t0731200-01
Chr02	irgsp1_rep	CDS	30461861	30461902	.	+	0	Parent=Os02t0731200-01
Chr02	irgsp1_rep	CDS	30462002	30462085	.	+	0	Parent=Os02t0731200-01
Chr02	irgsp1_rep	CDS	30462169	30462332	.	+	0	Parent=Os02t0731200-01
Chr02	irgsp1_rep	CDS	30462420	30462435	.	+	1	Parent=Os02t0731200-01
Chr02	irgsp1_rep	three_prime_UTR	30462436	30462759	.	+	.	Parent=Os02t0731200-01
Chr02	irgsp1_rep	mRNA	30459392	30464135	.	-	.	ID=Os02t0731300-01;Name=Os02t0731300-01;Locus_id=Os02g0731300;Note=Non-protein coding transcript.;Transcript_evidence=AK108784 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-151-A10;TENOR=Os02t0731300-01
Chr02	irgsp1_rep	exon	30464064	30464135	.	-	.	Parent=Os02t0731300-01
Chr02	irgsp1_rep	exon	30459803	30461254	.	-	.	Parent=Os02t0731300-01
Chr02	irgsp1_rep	exon	30459392	30459712	.	-	.	Parent=Os02t0731300-01
Chr02	irgsp1_rep	mRNA	30467578	30468413	.	+	.	ID=Os02t0731400-01;Name=Os02t0731400-01;Locus_id=Os02g0731400;CGSNL Gene Symbol=UCL5;CGSNL Gene Name=UCLACYANIN-LIKE PROTEIN 5;Oryzabase Gene Symbol Synonym(s)=OsUCL5;Oryzabase Gene Name Synonym(s)=uclacyanin-like protein 5;Note=Similar to Chemocyanin precursor (Basic blue protein) (Plantacyanin).;Transcript_evidence=AK243067 (DDBJ%2C Best hit);ORF_evidence=B6T2E5 (UniProt);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Blue (type 1) copper domain (IPR000923),Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);NIAS_FLcDNA=J100016H19;Oryzabase=9754;TENOR=Os02t0731400-01;KEGG=Os02t0731400-01
Chr02	irgsp1_rep	five_prime_UTR	30467578	30467663	.	+	.	Parent=Os02t0731400-01
Chr02	irgsp1_rep	CDS	30467664	30467868	.	+	0	Parent=Os02t0731400-01
Chr02	irgsp1_rep	CDS	30467983	30468182	.	+	2	Parent=Os02t0731400-01
Chr02	irgsp1_rep	three_prime_UTR	30468183	30468413	.	+	.	Parent=Os02t0731400-01
Chr02	irgsp1_rep	mRNA	30468783	30470102	.	-	.	ID=Os02t0731500-01;Name=Os02t0731500-01;Locus_id=Os02g0731500;Note=Similar to cDNA%2C clone: J065098J18%2C full insert sequence.;Transcript_evidence=AK241217 (DDBJ%2C Best hit);ORF_evidence=NP_001048020.2 (RefSeq);InterPro=AWPM-19-like (IPR008390);NIAS_FLcDNA=J065123G07;TENOR=Os02t0731500-01;KEGG=Os02t0731500-01
Chr02	irgsp1_rep	five_prime_UTR	30469794	30470102	.	-	.	Parent=Os02t0731500-01
Chr02	irgsp1_rep	CDS	30469491	30469793	.	-	0	Parent=Os02t0731500-01
Chr02	irgsp1_rep	three_prime_UTR	30469409	30469490	.	-	.	Parent=Os02t0731500-01
Chr02	irgsp1_rep	three_prime_UTR	30468783	30469301	.	-	.	Parent=Os02t0731500-01
Chr02	irgsp1_rep	mRNA	30468864	30470088	.	-	.	ID=Os02t0731500-02;Name=Os02t0731500-02;Locus_id=Os02g0731500;Note=AWPM-19-like family protein.;Transcript_evidence=AK241134 (DDBJ%2C Best hit);ORF_evidence=P93615 (UniProt);InterPro=AWPM-19-like (IPR008390);NIAS_FLcDNA=J065098J18;TENOR=Os02t0731500-02;KEGG=Os02t0731500-02
Chr02	irgsp1_rep	five_prime_UTR	30470019	30470088	.	-	.	Parent=Os02t0731500-02
Chr02	irgsp1_rep	CDS	30469889	30470018	.	-	0	Parent=Os02t0731500-02
Chr02	irgsp1_rep	CDS	30469491	30469759	.	-	2	Parent=Os02t0731500-02
Chr02	irgsp1_rep	three_prime_UTR	30469409	30469490	.	-	.	Parent=Os02t0731500-02
Chr02	irgsp1_rep	three_prime_UTR	30468864	30469301	.	-	.	Parent=Os02t0731500-02
Chr02	irgsp1_rep	mRNA	30472233	30473053	.	+	.	ID=Os02t0731600-01;Name=Os02t0731600-01;Locus_id=Os02g0731600;Note=Similar to Threonine endopeptidase.;Transcript_evidence=AK058271 (DDBJ%2C Best hit);ORF_evidence=B6TCN7 (UniProt);NIAS_FLcDNA=001-013-B08;Expression=AK058271;TENOR=Os02t0731600-01;KEGG=Os02t0731600-01
Chr02	irgsp1_rep	five_prime_UTR	30472233	30472234	.	+	.	Parent=Os02t0731600-01
Chr02	irgsp1_rep	CDS	30472235	30472315	.	+	0	Parent=Os02t0731600-01
Chr02	irgsp1_rep	CDS	30472405	30472512	.	+	0	Parent=Os02t0731600-01
Chr02	irgsp1_rep	CDS	30472609	30472680	.	+	0	Parent=Os02t0731600-01
Chr02	irgsp1_rep	CDS	30472794	30472859	.	+	0	Parent=Os02t0731600-01
Chr02	irgsp1_rep	three_prime_UTR	30472860	30473053	.	+	.	Parent=Os02t0731600-01
Chr02	irgsp1_rep	mRNA	30473853	30475800	.	-	.	ID=Os02t0731700-01;Name=Os02t0731700-01;Locus_id=Os02g0731700;Oryzabase Gene Symbol Synonym(s)=OsBBX8%2C OsK%2C OsCCT09%2C OsGhd2%2C OsK/Ghd2%2C BBX8%2C CCT09%2C Ghd2;Oryzabase Gene Name Synonym(s)=B-box-containing protein 8%2C CCT domain-containing gene 9%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 9%2C CCT domain protein 9%2C "Grain number%2C plant height%2C and heading date2"%2C CONSTANS-like 1 protein;Note=CCT domain domain containing protein.;Transcript_evidence=AK072346 (DDBJ%2C Best hit);ORF_evidence=Q6Z2L0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=CCT domain (IPR010402);NIAS_FLcDNA=J023048G07;Oryzabase=11639;TENOR=Os02t0731700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	30475772	30475800	.	-	.	Parent=Os02t0731700-01
Chr02	irgsp1_rep	CDS	30475706	30475771	.	-	0	Parent=Os02t0731700-01
Chr02	irgsp1_rep	CDS	30474589	30475320	.	-	0	Parent=Os02t0731700-01
Chr02	irgsp1_rep	CDS	30474249	30474494	.	-	0	Parent=Os02t0731700-01
Chr02	irgsp1_rep	three_prime_UTR	30473853	30474248	.	-	.	Parent=Os02t0731700-01
Chr02	irgsp1_rep	mRNA	30473739	30475773	.	-	.	ID=Os02t0731700-02;Name=Os02t0731700-02;Locus_id=Os02g0731700;Oryzabase Gene Symbol Synonym(s)=OsBBX8%2C OsK%2C OsCCT09%2C OsGhd2%2C OsK/Ghd2%2C BBX8%2C CCT09%2C Ghd2;Oryzabase Gene Name Synonym(s)=B-box-containing protein 8%2C CCT domain-containing gene 9%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 9%2C CCT domain protein 9%2C "Grain number%2C plant height%2C and heading date2"%2C CONSTANS-like 1 protein;Note=Similar to CONSTANS-like 1 protein.;Transcript_evidence=AK120314 (DDBJ%2C Best hit);ORF_evidence=Q6Z2L0 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C B-box (IPR000315),CCT domain (IPR010402);NIAS_FLcDNA=J013055L13;Oryzabase=11639;Expression=AK120314;TENOR=Os02t0731700-02;KEGG=Os02t0731700-02
Chr02	irgsp1_rep	five_prime_UTR	30475702	30475773	.	-	.	Parent=Os02t0731700-02
Chr02	irgsp1_rep	CDS	30474589	30475701	.	-	0	Parent=Os02t0731700-02
Chr02	irgsp1_rep	CDS	30474249	30474494	.	-	0	Parent=Os02t0731700-02
Chr02	irgsp1_rep	three_prime_UTR	30473739	30474248	.	-	.	Parent=Os02t0731700-02
Chr02	irgsp1_rep	mRNA	30474043	30475759	.	+	.	ID=Os02t0731800-00;Name=Os02t0731800-00;Locus_id=Os02g0731800;Note=Hypothetical protein.;Transcript_evidence=tplb0030k24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0731800-00
Chr02	irgsp1_rep	five_prime_UTR	30474043	30474212	.	+	.	Parent=Os02t0731800-00
Chr02	irgsp1_rep	CDS	30474213	30474569	.	+	0	Parent=Os02t0731800-00
Chr02	irgsp1_rep	three_prime_UTR	30474570	30475759	.	+	.	Parent=Os02t0731800-00
Chr02	irgsp1_rep	mRNA	30500236	30502286	.	+	.	ID=Os02t0731900-01;Name=Os02t0731900-01;Locus_id=Os02g0731900;Note=Similar to 3-ketoacyl-CoA synthase.;Transcript_evidence=AK241282 (DDBJ%2C Best hit);ORF_evidence=B8A0R6 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: metabolic process (GO:0008152),Biological Process: lipid biosynthetic process (GO:0008610),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Very-long-chain 3-ketoacyl-CoA synthase (IPR012392),FAE1/Type III polyketide synthase-like protein (IPR013601),3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (IPR013747),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);NIAS_FLcDNA=J065136G23;TENOR=Os02t0731900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	30500236	30500291	.	+	.	Parent=Os02t0731900-01
Chr02	irgsp1_rep	CDS	30500292	30501797	.	+	0	Parent=Os02t0731900-01
Chr02	irgsp1_rep	three_prime_UTR	30501798	30502286	.	+	.	Parent=Os02t0731900-01
Chr02	irgsp1_rep	mRNA	30518062	30522415	.	+	.	ID=Os02t0732200-01;Name=Os02t0732200-01;Locus_id=Os02g0732200;Oryzabase Gene Symbol Synonym(s)=OsPUB9;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 9%2C U-box protein 9;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK102091 (DDBJ%2C Best hit);ORF_evidence=B6SVE7 (UniProt);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),U box domain (IPR003613),Armadillo-like helical (IPR011989),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033082P22;Oryzabase=17802;Expression=AK102091;TENOR=Os02t0732200-01;KEGG=Os02t0732200-01
Chr02	irgsp1_rep	five_prime_UTR	30518062	30518223	.	+	.	Parent=Os02t0732200-01
Chr02	irgsp1_rep	CDS	30518224	30518508	.	+	0	Parent=Os02t0732200-01
Chr02	irgsp1_rep	CDS	30520343	30520459	.	+	0	Parent=Os02t0732200-01
Chr02	irgsp1_rep	CDS	30520533	30520985	.	+	0	Parent=Os02t0732200-01
Chr02	irgsp1_rep	CDS	30521096	30522154	.	+	0	Parent=Os02t0732200-01
Chr02	irgsp1_rep	three_prime_UTR	30522155	30522415	.	+	.	Parent=Os02t0732200-01
Chr02	irgsp1_rep	mRNA	30520916	30522141	.	-	.	ID=Os02t0732250-00;Name=Os02t0732250-00;Locus_id=Os02g0732250;Note=Hypothetical protein.;Transcript_evidence=tplb0025i19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0732250-00
Chr02	irgsp1_rep	five_prime_UTR	30521515	30522141	.	-	.	Parent=Os02t0732250-00
Chr02	irgsp1_rep	CDS	30521194	30521514	.	-	0	Parent=Os02t0732250-00
Chr02	irgsp1_rep	three_prime_UTR	30521074	30521193	.	-	.	Parent=Os02t0732250-00
Chr02	irgsp1_rep	three_prime_UTR	30520916	30520962	.	-	.	Parent=Os02t0732250-00
Chr02	irgsp1_rep	mRNA	30524531	30526667	.	+	.	ID=Os02t0732300-01;Name=Os02t0732300-01;Locus_id=Os02g0732300;Note=Conserved hypothetical protein.;Transcript_evidence=AK107773 (DDBJ%2C Best hit);ORF_evidence=B8AI19 (UniProt);NIAS_FLcDNA=002-133-B09;TENOR=Os02t0732300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	30524531	30524531	.	+	.	Parent=Os02t0732300-01
Chr02	irgsp1_rep	CDS	30524532	30524611	.	+	0	Parent=Os02t0732300-01
Chr02	irgsp1_rep	CDS	30525069	30525360	.	+	1	Parent=Os02t0732300-01
Chr02	irgsp1_rep	CDS	30526422	30526466	.	+	0	Parent=Os02t0732300-01
Chr02	irgsp1_rep	three_prime_UTR	30526467	30526667	.	+	.	Parent=Os02t0732300-01
Chr02	irgsp1_rep	mRNA	30524662	30525269	.	-	.	ID=Os02t0732350-00;Name=Os02t0732350-00;Locus_id=Os02g0732350;Note=Hypothetical protein.;Transcript_evidence=BT086454 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0732350-00
Chr02	irgsp1_rep	five_prime_UTR	30525268	30525269	.	-	.	Parent=Os02t0732350-00
Chr02	irgsp1_rep	CDS	30524662	30525267	.	-	0	Parent=Os02t0732350-00
Chr02	irgsp1_rep	mRNA	30528645	30530536	.	+	.	ID=Os02t0732400-01;Name=Os02t0732400-01;Locus_id=Os02g0732400;CGSNL Gene Symbol=TIFY8;CGSNL Gene Name=TIFY GENE 8;Oryzabase Gene Symbol Synonym(s)=OsJAZ12%2C OsTIFY8%2C OsSTA75;Oryzabase Gene Name Synonym(s)=Jasmonate ZIM-domain protein 12;Note=Tify domain containing protein.;Transcript_evidence=AK107003 (DDBJ%2C Best hit);ORF_evidence=B9F2J9 (UniProt);InterPro=Tify (IPR010399);NIAS_FLcDNA=002-120-D01;Oryzabase=9498;Expression=AK107003;TENOR=Os02t0732400-01;KEGG=Os02t0732400-01
Chr02	irgsp1_rep	five_prime_UTR	30528645	30529065	.	+	.	Parent=Os02t0732400-01
Chr02	irgsp1_rep	CDS	30529066	30529151	.	+	0	Parent=Os02t0732400-01
Chr02	irgsp1_rep	CDS	30529289	30529376	.	+	1	Parent=Os02t0732400-01
Chr02	irgsp1_rep	CDS	30529467	30529748	.	+	0	Parent=Os02t0732400-01
Chr02	irgsp1_rep	CDS	30529834	30529851	.	+	0	Parent=Os02t0732400-01
Chr02	irgsp1_rep	three_prime_UTR	30529852	30529894	.	+	.	Parent=Os02t0732400-01
Chr02	irgsp1_rep	three_prime_UTR	30530000	30530536	.	+	.	Parent=Os02t0732400-01
Chr02	irgsp1_rep	mRNA	30533422	30536326	.	-	.	ID=Os02t0732500-01;Name=Os02t0732500-01;Locus_id=Os02g0732500;Oryzabase Gene Symbol Synonym(s)=OsARL1b%2C ARL1b;Oryzabase Gene Name Synonym(s)=ARF-like protein 1b;Note=Similar to ADP-ribosylation factor-like protein.;Transcript_evidence=AK111722 (DDBJ%2C Best hit);ORF_evidence=NP_001147766.1 (RefSeq);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: intracellular protein transport (GO:0006886),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Cellular Component: membrane (GO:0016020),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C SAR1-type (IPR006687),Small GTPase superfamily%2C ARF/SAR type (IPR006689),Small GTPase superfamily%2C Ras type (IPR020849),Small GTPase superfamily%2C ARF type (IPR024156);NIAS_FLcDNA=J023029C05;Oryzabase=21017;Expression=AK111722;TENOR=Os02t0732500-01;KEGG=Os02t0732500-01
Chr02	irgsp1_rep	five_prime_UTR	30536207	30536326	.	-	.	Parent=Os02t0732500-01
Chr02	irgsp1_rep	CDS	30536169	30536206	.	-	0	Parent=Os02t0732500-01
Chr02	irgsp1_rep	CDS	30535022	30535103	.	-	1	Parent=Os02t0732500-01
Chr02	irgsp1_rep	CDS	30534901	30534933	.	-	0	Parent=Os02t0732500-01
Chr02	irgsp1_rep	CDS	30534684	30534805	.	-	0	Parent=Os02t0732500-01
Chr02	irgsp1_rep	CDS	30533869	30534030	.	-	1	Parent=Os02t0732500-01
Chr02	irgsp1_rep	CDS	30533655	30533772	.	-	1	Parent=Os02t0732500-01
Chr02	irgsp1_rep	three_prime_UTR	30533422	30533654	.	-	.	Parent=Os02t0732500-01
Chr02	irgsp1_rep	mRNA	30539853	30541113	.	-	.	ID=Os02t0732600-01;Name=Os02t0732600-01;Locus_id=Os02g0732600;CGSNL Gene Symbol=MYB20;Oryzabase Gene Symbol Synonym(s)=OsMYB20%2C MYB20/43;Oryzabase Gene Name Synonym(s)=myb transcription factor 20;Note=Similar to Typical P-type R2R3 Myb protein (Fragment).;Transcript_evidence=AK108709 (DDBJ%2C Best hit);ORF_evidence=NP_001149774.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=002-150-A10;Oryzabase=16303;Expression=AK108709;TENOR=Os02t0732600-01;KEGG=Os02t0732600-01
Chr02	irgsp1_rep	five_prime_UTR	30541028	30541113	.	-	.	Parent=Os02t0732600-01
Chr02	irgsp1_rep	CDS	30540895	30541027	.	-	0	Parent=Os02t0732600-01
Chr02	irgsp1_rep	CDS	30540630	30540759	.	-	2	Parent=Os02t0732600-01
Chr02	irgsp1_rep	CDS	30540030	30540534	.	-	1	Parent=Os02t0732600-01
Chr02	irgsp1_rep	three_prime_UTR	30539853	30540029	.	-	.	Parent=Os02t0732600-01
Chr02	irgsp1_rep	mRNA	30542197	30553568	.	-	.	ID=Os02t0732700-01;Name=Os02t0732700-01;Locus_id=Os02g0732700;Oryzabase Gene Symbol Synonym(s)=OsMed23_1%2C Med23_1;Oryzabase Gene Name Synonym(s)=Mediator 23_1;Note=Mediator complex%2C subunit Med23 domain containing protein.;Transcript_evidence=AK121868 (DDBJ%2C Best hit);ORF_evidence=B8AI23 (UniProt);InterPro=Mediator complex%2C subunit Med23 (IPR021629);NIAS_FLcDNA=J033103L16;Oryzabase=20981;Expression=AK121868;TENOR=Os02t0732700-01;KEGG=Os02t0732700-01
Chr02	irgsp1_rep	five_prime_UTR	30553481	30553568	.	-	.	Parent=Os02t0732700-01
Chr02	irgsp1_rep	CDS	30553331	30553480	.	-	0	Parent=Os02t0732700-01
Chr02	irgsp1_rep	CDS	30553201	30553244	.	-	0	Parent=Os02t0732700-01
Chr02	irgsp1_rep	CDS	30552709	30552808	.	-	1	Parent=Os02t0732700-01
Chr02	irgsp1_rep	CDS	30551651	30552625	.	-	0	Parent=Os02t0732700-01
Chr02	irgsp1_rep	CDS	30550893	30551130	.	-	0	Parent=Os02t0732700-01
Chr02	irgsp1_rep	CDS	30550430	30550647	.	-	2	Parent=Os02t0732700-01
Chr02	irgsp1_rep	CDS	30549866	30550079	.	-	0	Parent=Os02t0732700-01
Chr02	irgsp1_rep	CDS	30549276	30549562	.	-	2	Parent=Os02t0732700-01
Chr02	irgsp1_rep	CDS	30548781	30548864	.	-	0	Parent=Os02t0732700-01
Chr02	irgsp1_rep	CDS	30548477	30548571	.	-	0	Parent=Os02t0732700-01
Chr02	irgsp1_rep	CDS	30548112	30548274	.	-	1	Parent=Os02t0732700-01
Chr02	irgsp1_rep	CDS	30547790	30548035	.	-	0	Parent=Os02t0732700-01
Chr02	irgsp1_rep	CDS	30547102	30547269	.	-	0	Parent=Os02t0732700-01
Chr02	irgsp1_rep	CDS	30546911	30547024	.	-	0	Parent=Os02t0732700-01
Chr02	irgsp1_rep	CDS	30546665	30546790	.	-	0	Parent=Os02t0732700-01
Chr02	irgsp1_rep	CDS	30546020	30546165	.	-	0	Parent=Os02t0732700-01
Chr02	irgsp1_rep	CDS	30544702	30544945	.	-	1	Parent=Os02t0732700-01
Chr02	irgsp1_rep	CDS	30543854	30544616	.	-	0	Parent=Os02t0732700-01
Chr02	irgsp1_rep	CDS	30543557	30543738	.	-	2	Parent=Os02t0732700-01
Chr02	irgsp1_rep	CDS	30542997	30543100	.	-	0	Parent=Os02t0732700-01
Chr02	irgsp1_rep	CDS	30542621	30542822	.	-	1	Parent=Os02t0732700-01
Chr02	irgsp1_rep	three_prime_UTR	30542197	30542620	.	-	.	Parent=Os02t0732700-01
Chr02	irgsp1_rep	mRNA	30548129	30553539	.	-	.	ID=Os02t0732700-02;Name=Os02t0732700-02;Locus_id=Os02g0732700;Oryzabase Gene Symbol Synonym(s)=OsMed23_1%2C Med23_1;Oryzabase Gene Name Synonym(s)=Mediator 23_1;Note=Similar to F26F24.8.;Transcript_evidence=AK072905 (DDBJ%2C Best hit);ORF_evidence=XP_002452600.1 (RefSeq);NIAS_FLcDNA=J023146J04;Oryzabase=20981;TENOR=Os02t0732700-02
Chr02	irgsp1_rep	five_prime_UTR	30553481	30553539	.	-	.	Parent=Os02t0732700-02
Chr02	irgsp1_rep	CDS	30553331	30553480	.	-	0	Parent=Os02t0732700-02
Chr02	irgsp1_rep	CDS	30553201	30553244	.	-	0	Parent=Os02t0732700-02
Chr02	irgsp1_rep	CDS	30552709	30552808	.	-	1	Parent=Os02t0732700-02
Chr02	irgsp1_rep	CDS	30551651	30552625	.	-	0	Parent=Os02t0732700-02
Chr02	irgsp1_rep	CDS	30550893	30551130	.	-	0	Parent=Os02t0732700-02
Chr02	irgsp1_rep	CDS	30550430	30550647	.	-	2	Parent=Os02t0732700-02
Chr02	irgsp1_rep	CDS	30549866	30550079	.	-	0	Parent=Os02t0732700-02
Chr02	irgsp1_rep	CDS	30549276	30549562	.	-	2	Parent=Os02t0732700-02
Chr02	irgsp1_rep	CDS	30548781	30548864	.	-	0	Parent=Os02t0732700-02
Chr02	irgsp1_rep	CDS	30548477	30548571	.	-	0	Parent=Os02t0732700-02
Chr02	irgsp1_rep	CDS	30548129	30548274	.	-	1	Parent=Os02t0732700-02
Chr02	irgsp1_rep	mRNA	30542197	30548229	.	-	.	ID=Os02t0732700-03;Name=Os02t0732700-03;Locus_id=Os02g0732700;Oryzabase Gene Symbol Synonym(s)=OsMed23_1%2C Med23_1;Oryzabase Gene Name Synonym(s)=Mediator 23_1;Note=Similar to F26F24.8.;Transcript_evidence=AK065825 (DDBJ%2C Best hit);ORF_evidence=B8AI23 (UniProt);InterPro=Mediator complex%2C subunit Med23 (IPR021629);NIAS_FLcDNA=J013041D24;Oryzabase=20981;Expression=AK065825;TENOR=Os02t0732700-03;KEGG=Os02t0732700-03
Chr02	irgsp1_rep	five_prime_UTR	30548229	30548229	.	-	.	Parent=Os02t0732700-03
Chr02	irgsp1_rep	CDS	30548112	30548228	.	-	0	Parent=Os02t0732700-03
Chr02	irgsp1_rep	CDS	30547790	30548035	.	-	0	Parent=Os02t0732700-03
Chr02	irgsp1_rep	CDS	30547102	30547269	.	-	0	Parent=Os02t0732700-03
Chr02	irgsp1_rep	CDS	30546911	30547024	.	-	0	Parent=Os02t0732700-03
Chr02	irgsp1_rep	CDS	30546665	30546790	.	-	0	Parent=Os02t0732700-03
Chr02	irgsp1_rep	CDS	30546020	30546165	.	-	0	Parent=Os02t0732700-03
Chr02	irgsp1_rep	CDS	30544702	30544945	.	-	1	Parent=Os02t0732700-03
Chr02	irgsp1_rep	CDS	30543854	30544616	.	-	0	Parent=Os02t0732700-03
Chr02	irgsp1_rep	CDS	30543557	30543738	.	-	2	Parent=Os02t0732700-03
Chr02	irgsp1_rep	CDS	30542997	30543100	.	-	0	Parent=Os02t0732700-03
Chr02	irgsp1_rep	CDS	30542621	30542822	.	-	1	Parent=Os02t0732700-03
Chr02	irgsp1_rep	three_prime_UTR	30542197	30542620	.	-	.	Parent=Os02t0732700-03
Chr02	irgsp1_rep	mRNA	30554630	30556339	.	-	.	ID=Os02t0732800-00;Name=Os02t0732800-00;Locus_id=Os02g0732800;CGSNL Gene Symbol=GELP43;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 43;Oryzabase Gene Symbol Synonym(s)=OsGELP43;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 43;Note=Similar to Anther-specific proline-rich protein APG.;Transcript_evidence=EU974803 (DDBJ);ORF_evidence=B4FSE4 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087),Esterase%2C SGNH hydrolase-type (IPR013830);Oryzabase=10993;TENOR=Os02t0732800-00;KEGG=Os02t0732800-00
Chr02	irgsp1_rep	five_prime_UTR	30556253	30556339	.	-	.	Parent=Os02t0732800-00
Chr02	irgsp1_rep	CDS	30556000	30556252	.	-	0	Parent=Os02t0732800-00
Chr02	irgsp1_rep	CDS	30555784	30555911	.	-	2	Parent=Os02t0732800-00
Chr02	irgsp1_rep	CDS	30555568	30555694	.	-	0	Parent=Os02t0732800-00
Chr02	irgsp1_rep	CDS	30555338	30555450	.	-	2	Parent=Os02t0732800-00
Chr02	irgsp1_rep	CDS	30554979	30555228	.	-	0	Parent=Os02t0732800-00
Chr02	irgsp1_rep	CDS	30554630	30554877	.	-	2	Parent=Os02t0732800-00
Chr02	irgsp1_rep	mRNA	30557558	30560948	.	+	.	ID=Os02t0732900-01;Name=Os02t0732900-01;Locus_id=Os02g0732900;CGSNL Gene Symbol=ISC41;CGSNL Gene Name=IRON-SULFUR CLUSTER PROTEIN 41;Oryzabase Gene Symbol Synonym(s)=OsISC41;Oryzabase Gene Name Synonym(s)=Iron-sulfur cluster protein 41;Note=Protein of unknown function DUF794%2C plant family protein.;Transcript_evidence=AK065796 (DDBJ%2C Best hit),AK104342 (DDBJ%2C Best hit);ORF_evidence=B6T348 (UniProt);InterPro=APO protein%2C plant (IPR008512),APO domain (IPR023342);NIAS_FLcDNA=J013041F02,001-034-B08;Oryzabase=13443;TENOR=Os02t0732900-01
Chr02	irgsp1_rep	five_prime_UTR	30557558	30557664	.	+	.	Parent=Os02t0732900-01
Chr02	irgsp1_rep	CDS	30557665	30557796	.	+	0	Parent=Os02t0732900-01
Chr02	irgsp1_rep	CDS	30557943	30558010	.	+	0	Parent=Os02t0732900-01
Chr02	irgsp1_rep	CDS	30558674	30558994	.	+	1	Parent=Os02t0732900-01
Chr02	irgsp1_rep	CDS	30559825	30560653	.	+	1	Parent=Os02t0732900-01
Chr02	irgsp1_rep	three_prime_UTR	30560654	30560948	.	+	.	Parent=Os02t0732900-01
Chr02	irgsp1_rep	mRNA	30561276	30563576	.	-	.	ID=Os02t0733001-00;Name=Os02t0733001-00;Locus_id=Os02g0733001;Note=Similar to microtubule motor.;Transcript_evidence=EU952810 (DDBJ);ORF_evidence=NP_001146989.1 (RefSeq);GO=Biological Process: microtubule-based process (GO:0007017),Cellular Component: microtubule associated complex (GO:0005875);InterPro=Dynein light chain%2C type 1/2 (IPR001372);TENOR=Os02t0733001-00;KEGG=Os02t0733001-00
Chr02	irgsp1_rep	five_prime_UTR	30563413	30563576	.	-	.	Parent=Os02t0733001-00
Chr02	irgsp1_rep	CDS	30563110	30563412	.	-	0	Parent=Os02t0733001-00
Chr02	irgsp1_rep	CDS	30561276	30561455	.	-	0	Parent=Os02t0733001-00
Chr02	irgsp1_rep	mRNA	30567233	30567808	.	-	.	ID=Os02t0733166-00;Name=Os02t0733166-00;Locus_id=Os02g0733166;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9F2K4 (UniProt);TENOR=Os02t0733166-00;KEGG=Os02t0733166-00
Chr02	irgsp1_rep	CDS	30567233	30567808	.	-	0	Parent=Os02t0733166-00
Chr02	irgsp1_rep	mRNA	30567356	30569976	.	+	.	ID=Os02t0733200-01;Name=Os02t0733200-01;Locus_id=Os02g0733200;Note=Conserved hypothetical protein.;Transcript_evidence=AK241091 (DDBJ%2C Best hit);ORF_evidence=NP_001173141.1 (RefSeq);NIAS_FLcDNA=J065075P19;TENOR=Os02t0733200-01;KEGG=Os02t0733200-01
Chr02	irgsp1_rep	five_prime_UTR	30567356	30567470	.	+	.	Parent=Os02t0733200-01
Chr02	irgsp1_rep	CDS	30567471	30567975	.	+	0	Parent=Os02t0733200-01
Chr02	irgsp1_rep	CDS	30569067	30569080	.	+	2	Parent=Os02t0733200-01
Chr02	irgsp1_rep	three_prime_UTR	30569081	30569173	.	+	.	Parent=Os02t0733200-01
Chr02	irgsp1_rep	three_prime_UTR	30569811	30569976	.	+	.	Parent=Os02t0733200-01
Chr02	irgsp1_rep	mRNA	30573454	30577260	.	+	.	ID=Os02t0733300-01;Name=Os02t0733300-01;Locus_id=Os02g0733300;CGSNL Gene Symbol=GH9B1;CGSNL Gene Name=GLYCOSIDE HYDROLASE 9B1;Oryzabase Gene Symbol Synonym(s)=OsGH9B1;Oryzabase Gene Name Synonym(s)=glycoside hydrolase OsGH9B1%2C glycoside hydrolase 9B1;Note=Similar to Endo-beta-1%2C4-glucanase precursor (EC 3.2.1.4).;Transcript_evidence=AK101108 (DDBJ%2C Best hit),AK105446 (DDBJ%2C Best hit);ORF_evidence=Q652F9 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 9 (IPR001701),Six-hairpin glycosidase-like (IPR008928),Six-hairpin glycosidase (IPR012341),Glycoside hydrolase%2C family 9%2C active site (IPR018221);NIAS_FLcDNA=J033025E01,001-125-B05;Oryzabase=11701;Expression=AK101108;TENOR=Os02t0733300-01;KEGG=Os02t0733300-01 (EC:3.2.1.4)
Chr02	irgsp1_rep	five_prime_UTR	30573454	30573672	.	+	.	Parent=Os02t0733300-01
Chr02	irgsp1_rep	CDS	30573673	30573903	.	+	0	Parent=Os02t0733300-01
Chr02	irgsp1_rep	CDS	30573997	30574404	.	+	0	Parent=Os02t0733300-01
Chr02	irgsp1_rep	CDS	30574490	30574744	.	+	0	Parent=Os02t0733300-01
Chr02	irgsp1_rep	CDS	30576207	30576321	.	+	0	Parent=Os02t0733300-01
Chr02	irgsp1_rep	CDS	30576418	30576935	.	+	2	Parent=Os02t0733300-01
Chr02	irgsp1_rep	three_prime_UTR	30576936	30577260	.	+	.	Parent=Os02t0733300-01
Chr02	irgsp1_rep	mRNA	30577640	30578383	.	-	.	ID=Os02t0733400-00;Name=Os02t0733400-00;Locus_id=Os02g0733400;Note=Conserved hypothetical protein.;Transcript_evidence=EU968774 (DDBJ);ORF_evidence=NP_001048034.1 (RefSeq);TENOR=Os02t0733400-00;KEGG=Os02t0733400-00
Chr02	irgsp1_rep	five_prime_UTR	30578292	30578383	.	-	.	Parent=Os02t0733400-00
Chr02	irgsp1_rep	CDS	30578214	30578291	.	-	0	Parent=Os02t0733400-00
Chr02	irgsp1_rep	CDS	30577640	30578134	.	-	0	Parent=Os02t0733400-00
Chr02	irgsp1_rep	mRNA	30579928	30580869	.	-	.	ID=Os02t0733500-01;Name=Os02t0733500-01;Locus_id=Os02g0733500;CGSNL Gene Symbol=CML20;CGSNL Gene Name=CALMODULIN-LIKE PROTEIN 20;Oryzabase Gene Symbol Synonym(s)=OsCML20;Oryzabase Gene Name Synonym(s)=calmodulin-like protein 20;Note=EF-Hand type domain containing protein.;Transcript_evidence=AK108506 (DDBJ%2C Best hit);ORF_evidence=NP_001151296.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),Parvalbumin (IPR008080),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=002-143-H11;Oryzabase=10510;Expression=AK108506;TENOR=Os02t0733500-01;KEGG=Os02t0733500-01
Chr02	irgsp1_rep	five_prime_UTR	30580801	30580869	.	-	.	Parent=Os02t0733500-01
Chr02	irgsp1_rep	CDS	30580276	30580800	.	-	0	Parent=Os02t0733500-01
Chr02	irgsp1_rep	three_prime_UTR	30579928	30580275	.	-	.	Parent=Os02t0733500-01
Chr02	irgsp1_rep	mRNA	30593495	30596146	.	+	.	ID=Os02t0733800-01;Name=Os02t0733800-01;Locus_id=Os02g0733800;Oryzabase Gene Symbol Synonym(s)=OsSET13;Oryzabase Gene Name Synonym(s)=SET protein 13;Note=SET domain containing protein.;Transcript_evidence=AK121645 (DDBJ%2C Best hit);ORF_evidence=NP_001151430.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=SET domain (IPR001214),Rubisco LS methyltransferase%2C substrate-binding domain (IPR015353);NIAS_FLcDNA=J033058C09;Oryzabase=13379;Expression=AK121645;TENOR=Os02t0733800-01;KEGG=Os02t0733800-01
Chr02	irgsp1_rep	five_prime_UTR	30593495	30593590	.	+	.	Parent=Os02t0733800-01
Chr02	irgsp1_rep	CDS	30593591	30593978	.	+	0	Parent=Os02t0733800-01
Chr02	irgsp1_rep	CDS	30594562	30594728	.	+	2	Parent=Os02t0733800-01
Chr02	irgsp1_rep	CDS	30594795	30595065	.	+	0	Parent=Os02t0733800-01
Chr02	irgsp1_rep	CDS	30595291	30595556	.	+	2	Parent=Os02t0733800-01
Chr02	irgsp1_rep	CDS	30595687	30596055	.	+	0	Parent=Os02t0733800-01
Chr02	irgsp1_rep	three_prime_UTR	30596056	30596146	.	+	.	Parent=Os02t0733800-01
Chr02	irgsp1_rep	mRNA	30596400	30597001	.	-	.	ID=Os02t0733900-01;Name=Os02t0733900-01;Locus_id=Os02g0733900;RAP-DB Gene Symbol Synonym(s)=OsSYL2;RAP-DB Gene Name Synonym(s)=style length 2;Note=Regulation of style length;Transcript_evidence=AK111335;ORF_evidence=Q6Z2I6;NIAS_FLcDNA=002-181-F02;Manual Curation=October 9%2C 2020;Literature_PMID=33031564;Expression=AK111335;TENOR=Os02t0733900-01;KEGG=Os02t0733900-01
Chr02	irgsp1_rep	five_prime_UTR	30596901	30597001	.	-	.	Parent=Os02t0733900-01
Chr02	irgsp1_rep	CDS	30596658	30596900	.	-	0	Parent=Os02t0733900-01
Chr02	irgsp1_rep	three_prime_UTR	30596400	30596657	.	-	.	Parent=Os02t0733900-01
Chr02	irgsp1_rep	mRNA	30622333	30622900	.	+	.	ID=Os02t0734101-00;Name=Os02t0734101-00;Locus_id=Os02g0734101;Note=Hypothetical conserved gene.;Transcript_evidence=CT835358 (DDBJ%2C Best hit);ORF_evidence=Q6Z2I2 (UniProt);TENOR=Os02t0734101-00;KEGG=Os02t0734101-00
Chr02	irgsp1_rep	five_prime_UTR	30622333	30622334	.	+	.	Parent=Os02t0734101-00
Chr02	irgsp1_rep	CDS	30622335	30622400	.	+	0	Parent=Os02t0734101-00
Chr02	irgsp1_rep	three_prime_UTR	30622401	30622900	.	+	.	Parent=Os02t0734101-00
Chr02	irgsp1_rep	mRNA	30625668	30626865	.	+	.	ID=Os02t0734300-01;Name=Os02t0734300-01;Locus_id=Os02g0734300;Note=Similar to Nudix hydrolase 18%2C mitochondrial precursor (EC 3.6.1.-) (AtNUDT18).;Transcript_evidence=AK059780 (DDBJ%2C Best hit),AK104571 (DDBJ%2C Best hit);ORF_evidence=B6SU45 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=NUDIX hydrolase domain (IPR000086),NUDIX hydrolase domain-like (IPR015797),NUDIX hydrolase%2C conserved site (IPR020084);NIAS_FLcDNA=006-204-C03,006-306-G07;TENOR=Os02t0734300-01
Chr02	irgsp1_rep	five_prime_UTR	30625668	30625747	.	+	.	Parent=Os02t0734300-01
Chr02	irgsp1_rep	CDS	30625748	30626122	.	+	0	Parent=Os02t0734300-01
Chr02	irgsp1_rep	CDS	30626258	30626365	.	+	0	Parent=Os02t0734300-01
Chr02	irgsp1_rep	three_prime_UTR	30626366	30626865	.	+	.	Parent=Os02t0734300-01
Chr02	irgsp1_rep	mRNA	30631324	30632669	.	+	.	ID=Os02t0734400-00;Name=Os02t0734400-00;Locus_id=Os02g0734400;Note=Similar to ABA-induced protein.;Transcript_evidence=BT084282 (DDBJ);ORF_evidence=NP_001150081.1 (RefSeq);InterPro=Caleosin (IPR007736),EF-HAND 2 (IPR018249);TENOR=Os02t0734400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	30631324	30631401	.	+	.	Parent=Os02t0734400-00
Chr02	irgsp1_rep	CDS	30631402	30631648	.	+	0	Parent=Os02t0734400-00
Chr02	irgsp1_rep	CDS	30631814	30631899	.	+	2	Parent=Os02t0734400-00
Chr02	irgsp1_rep	CDS	30632018	30632112	.	+	0	Parent=Os02t0734400-00
Chr02	irgsp1_rep	CDS	30632281	30632406	.	+	1	Parent=Os02t0734400-00
Chr02	irgsp1_rep	CDS	30632516	30632669	.	+	1	Parent=Os02t0734400-00
Chr02	irgsp1_rep	mRNA	30636023	30638501	.	+	.	ID=Os02t0734500-00;Name=Os02t0734500-00;Locus_id=Os02g0734500;Note=Similar to ABA-induced protein.;Transcript_evidence=AK336071 (DDBJ);ORF_evidence=NP_001150081.1 (RefSeq);InterPro=Caleosin (IPR007736),EF-HAND 2 (IPR018249);TENOR=Os02t0734500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	30636023	30636121	.	+	.	Parent=Os02t0734500-00
Chr02	irgsp1_rep	CDS	30636122	30636173	.	+	0	Parent=Os02t0734500-00
Chr02	irgsp1_rep	CDS	30636487	30636600	.	+	2	Parent=Os02t0734500-00
Chr02	irgsp1_rep	CDS	30636985	30637070	.	+	2	Parent=Os02t0734500-00
Chr02	irgsp1_rep	CDS	30637386	30637480	.	+	0	Parent=Os02t0734500-00
Chr02	irgsp1_rep	CDS	30637857	30637991	.	+	1	Parent=Os02t0734500-00
Chr02	irgsp1_rep	CDS	30638351	30638501	.	+	1	Parent=Os02t0734500-00
Chr02	irgsp1_rep	mRNA	30642392	30654594	.	+	.	ID=Os02t0734600-01;Name=Os02t0734600-01;Locus_id=Os02g0734600;Note=Similar to EFA27 for EF hand%2C abscisic acid%2C 27kD.;Transcript_evidence=AK070347 (DDBJ%2C Best hit);ORF_evidence=NP_001148700.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),Caleosin (IPR007736),EF-hand-like domain (IPR011992),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J023054E24;Expression=AK070347;TENOR=Os02t0734600-01;KEGG=Os02t0734600-01
Chr02	irgsp1_rep	five_prime_UTR	30642392	30642558	.	+	.	Parent=Os02t0734600-01
Chr02	irgsp1_rep	CDS	30642559	30642667	.	+	0	Parent=Os02t0734600-01
Chr02	irgsp1_rep	CDS	30642749	30642874	.	+	2	Parent=Os02t0734600-01
Chr02	irgsp1_rep	CDS	30643005	30643090	.	+	2	Parent=Os02t0734600-01
Chr02	irgsp1_rep	CDS	30652527	30652734	.	+	0	Parent=Os02t0734600-01
Chr02	irgsp1_rep	CDS	30652837	30652971	.	+	2	Parent=Os02t0734600-01
Chr02	irgsp1_rep	CDS	30653098	30653183	.	+	2	Parent=Os02t0734600-01
Chr02	irgsp1_rep	CDS	30653691	30653785	.	+	0	Parent=Os02t0734600-01
Chr02	irgsp1_rep	CDS	30653938	30654063	.	+	1	Parent=Os02t0734600-01
Chr02	irgsp1_rep	CDS	30654166	30654316	.	+	1	Parent=Os02t0734600-01
Chr02	irgsp1_rep	three_prime_UTR	30654317	30654594	.	+	.	Parent=Os02t0734600-01
Chr02	irgsp1_rep	mRNA	30652550	30654596	.	+	.	ID=Os02t0734600-02;Name=Os02t0734600-02;Locus_id=Os02g0734600;Note=Similar to caleosin related protein.;Transcript_evidence=AK104748 (DDBJ%2C Best hit);ORF_evidence=NP_001148700.1 (RefSeq);InterPro=Caleosin (IPR007736),EF-HAND 2 (IPR018249);NIAS_FLcDNA=001-038-F03;Expression=AK104748;TENOR=Os02t0734600-02;KEGG=Os02t0734600-02
Chr02	irgsp1_rep	five_prime_UTR	30652550	30652658	.	+	.	Parent=Os02t0734600-02
Chr02	irgsp1_rep	CDS	30652659	30652734	.	+	0	Parent=Os02t0734600-02
Chr02	irgsp1_rep	CDS	30652837	30652971	.	+	2	Parent=Os02t0734600-02
Chr02	irgsp1_rep	CDS	30653098	30653183	.	+	2	Parent=Os02t0734600-02
Chr02	irgsp1_rep	CDS	30653691	30653785	.	+	0	Parent=Os02t0734600-02
Chr02	irgsp1_rep	CDS	30653938	30654063	.	+	1	Parent=Os02t0734600-02
Chr02	irgsp1_rep	CDS	30654166	30654316	.	+	1	Parent=Os02t0734600-02
Chr02	irgsp1_rep	three_prime_UTR	30654317	30654596	.	+	.	Parent=Os02t0734600-02
Chr02	irgsp1_rep	mRNA	30655287	30656368	.	+	.	ID=Os02t0734800-01;Name=Os02t0734800-01;Locus_id=Os02g0734800;Note=Protein of unknown function DUF26 domain containing protein.;Transcript_evidence=AK109142 (DDBJ%2C Best hit);ORF_evidence=NP_001151630.1 (RefSeq);InterPro=Gnk2-homologous domain (IPR002902);NIAS_FLcDNA=002-155-E10;Expression=AK109142;TENOR=Os02t0734800-01;KEGG=Os02t0734800-01
Chr02	irgsp1_rep	five_prime_UTR	30655287	30655358	.	+	.	Parent=Os02t0734800-01
Chr02	irgsp1_rep	CDS	30655359	30656195	.	+	0	Parent=Os02t0734800-01
Chr02	irgsp1_rep	three_prime_UTR	30656196	30656368	.	+	.	Parent=Os02t0734800-01
Chr02	irgsp1_rep	mRNA	30658440	30659079	.	+	.	ID=Os02t0734900-01;Name=Os02t0734900-01;Locus_id=Os02g0734900;Note=Similar to Erwinia induced protein 2.;Transcript_evidence=AK059269 (DDBJ%2C Best hit);ORF_evidence=B6ST10 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Cellular Component: endoplasmic reticulum (GO:0005783),Cellular Component: integral to membrane (GO:0016021);InterPro=B-cell receptor-associated 31-like (IPR008417);NIAS_FLcDNA=001-025-B07;Expression=AK059269;TENOR=Os02t0734900-01;KEGG=Os02t0734900-01
Chr02	irgsp1_rep	five_prime_UTR	30658440	30658496	.	+	.	Parent=Os02t0734900-01
Chr02	irgsp1_rep	CDS	30658497	30658895	.	+	0	Parent=Os02t0734900-01
Chr02	irgsp1_rep	three_prime_UTR	30658896	30659079	.	+	.	Parent=Os02t0734900-01
Chr02	irgsp1_rep	mRNA	30669217	30672861	.	+	.	ID=Os02t0735100-01;Name=Os02t0735100-01;Locus_id=Os02g0735100;Note=Peptidase M48%2C Ste24p family protein.;Transcript_evidence=AK120606 (DDBJ%2C Best hit);ORF_evidence=B6T554 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Cellular Component: membrane (GO:0016020),Molecular Function: metalloendopeptidase activity (GO:0004222);InterPro=Peptidase M48 (IPR001915);NIAS_FLcDNA=J013151A19;Expression=AK120606;TENOR=Os02t0735100-01;KEGG=Os02t0735100-01
Chr02	irgsp1_rep	five_prime_UTR	30669217	30669291	.	+	.	Parent=Os02t0735100-01
Chr02	irgsp1_rep	CDS	30669292	30670236	.	+	0	Parent=Os02t0735100-01
Chr02	irgsp1_rep	CDS	30670327	30670478	.	+	0	Parent=Os02t0735100-01
Chr02	irgsp1_rep	CDS	30672334	30672583	.	+	1	Parent=Os02t0735100-01
Chr02	irgsp1_rep	three_prime_UTR	30672584	30672861	.	+	.	Parent=Os02t0735100-01
Chr02	irgsp1_rep	mRNA	30670391	30671745	.	-	.	ID=Os02t0735150-01;Name=Os02t0735150-01;Locus_id=Os02g0735150;Note=Hypothetical gene.;Transcript_evidence=AK289138 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090099E01;TENOR=Os02t0735150-01;KEGG=Os02t0735150-01
Chr02	irgsp1_rep	five_prime_UTR	30671559	30671745	.	-	.	Parent=Os02t0735150-01
Chr02	irgsp1_rep	CDS	30671334	30671558	.	-	0	Parent=Os02t0735150-01
Chr02	irgsp1_rep	three_prime_UTR	30670391	30671333	.	-	.	Parent=Os02t0735150-01
Chr02	irgsp1_rep	mRNA	30675094	30678659	.	-	.	ID=Os02t0735200-01;Name=Os02t0735200-01;Locus_id=Os02g0735200;CGSNL Gene Symbol=GLN1%3B1;CGSNL Gene Name=GLUTAMINE SYNTHETASE 1%3B1;Oryzabase Gene Symbol Synonym(s)=OsGLN1%3B1%2C GS1%2C RGS28%2C OsGS1%3B1%2C GS1%3B1%2C OsGS%2C GS1%2C GLN1-1;Oryzabase Gene Name Synonym(s)=cytosolic glutamine synthethase 1%3B1%2C cytosolic glutamine synthase 1%2C glutamine synthetase 1%3B1%2C Glutamine synthetase%2C glutamine synthetase 1%2C glutamine synthetase shoot isozyme%2C glutamate:ammonia ligase gamma;Note=Glutamine synthetase shoot isozyme (EC 6.3.1.2) (Glutamate--ammonia ligase) (Clone lambda-GS28).;Transcript_evidence=AK071969 (DDBJ%2C Best hit);ORF_evidence=P14656 (UniProt);GO=Biological Process: glutamine biosynthetic process (GO:0006542),Biological Process: nitrogen compound metabolic process (GO:0006807),Molecular Function: catalytic activity (GO:0003824),Molecular Function: glutamate-ammonia ligase activity (GO:0004356);InterPro=Glutamine synthetase%2C catalytic domain (IPR008146),Glutamine synthetase%2C beta-Grasp (IPR008147),Glutamine synthetase/guanido kinase%2C catalytic domain (IPR014746);NIAS_FLcDNA=J013083D11;Oryzabase=8994;TENOR=Os02t0735200-01
Chr02	irgsp1_rep	five_prime_UTR	30678419	30678659	.	-	.	Parent=Os02t0735200-01
Chr02	irgsp1_rep	CDS	30678345	30678418	.	-	0	Parent=Os02t0735200-01
Chr02	irgsp1_rep	CDS	30677615	30677654	.	-	1	Parent=Os02t0735200-01
Chr02	irgsp1_rep	CDS	30677309	30677412	.	-	0	Parent=Os02t0735200-01
Chr02	irgsp1_rep	CDS	30677152	30677200	.	-	1	Parent=Os02t0735200-01
Chr02	irgsp1_rep	CDS	30676625	30676731	.	-	0	Parent=Os02t0735200-01
Chr02	irgsp1_rep	CDS	30676423	30676510	.	-	1	Parent=Os02t0735200-01
Chr02	irgsp1_rep	CDS	30676178	30676306	.	-	0	Parent=Os02t0735200-01
Chr02	irgsp1_rep	CDS	30675976	30676050	.	-	0	Parent=Os02t0735200-01
Chr02	irgsp1_rep	CDS	30675797	30675888	.	-	0	Parent=Os02t0735200-01
Chr02	irgsp1_rep	CDS	30675544	30675703	.	-	1	Parent=Os02t0735200-01
Chr02	irgsp1_rep	CDS	30675208	30675360	.	-	0	Parent=Os02t0735200-01
Chr02	irgsp1_rep	three_prime_UTR	30675094	30675207	.	-	.	Parent=Os02t0735200-01
Chr02	irgsp1_rep	mRNA	30674780	30678475	.	-	.	ID=Os02t0735200-02;Name=Os02t0735200-02;Locus_id=Os02g0735200;RAP-DB Gene Symbol Synonym(s)=OsGS1%3B1;RAP-DB Gene Name Synonym(s)=cytosolic glutamine synthetase 1%3B1;CGSNL Gene Symbol=GLN1%3B1;CGSNL Gene Name=GLUTAMINE SYNTHETASE 1%3B1;Oryzabase Gene Symbol Synonym(s)=OsGLN1%3B1%2C GS1%2C RGS28%2C OsGS1%3B1%2C GS1%3B1%2C OsGS%2C GS1%2C GLN1-1;Oryzabase Gene Name Synonym(s)=cytosolic glutamine synthethase 1%3B1%2C cytosolic glutamine synthase 1%2C glutamine synthetase 1%3B1%2C Glutamine synthetase%2C glutamine synthetase 1%2C glutamine synthetase shoot isozyme%2C glutamate:ammonia ligase gamma;Note=Cytosolic glutamine synthetase%2C Growth rate%2C Grain filling;Transcript_evidence=AK109397,AK104987;ORF_evidence=P14656;GO=Biological Process: glutamine biosynthetic process (GO:0006542),Biological Process: nitrogen compound metabolic process (GO:0006807),Molecular Function: catalytic activity (GO:0003824),Molecular Function: glutamate-ammonia ligase activity (GO:0004356);InterPro=Glutamine synthetase%2C N-terminal domain superfamily (IPR036651),Glutamine synthetase/guanido kinase%2C catalytic domain (IPR014746),Glutamine synthetase%2C beta-Grasp domain (IPR008147),Glutamine synthetase%2C catalytic domain (IPR008146),Glutamine synthetase%2C N-terminal conserved site (IPR027302),Glutamine synthetase%2C glycine-rich site (IPR027303);NIAS_FLcDNA=006-212-H07,001-001-A03;Manual Curation=July 10%2C 2018;Literature_PMID=24743556,15918879;Oryzabase=8994;TENOR=Os02t0735200-02;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	30678419	30678475	.	-	.	Parent=Os02t0735200-02
Chr02	irgsp1_rep	CDS	30678345	30678418	.	-	0	Parent=Os02t0735200-02
Chr02	irgsp1_rep	CDS	30677615	30677654	.	-	1	Parent=Os02t0735200-02
Chr02	irgsp1_rep	CDS	30677309	30677412	.	-	0	Parent=Os02t0735200-02
Chr02	irgsp1_rep	CDS	30677152	30677200	.	-	1	Parent=Os02t0735200-02
Chr02	irgsp1_rep	CDS	30676625	30676731	.	-	0	Parent=Os02t0735200-02
Chr02	irgsp1_rep	CDS	30676423	30676510	.	-	1	Parent=Os02t0735200-02
Chr02	irgsp1_rep	CDS	30676178	30676306	.	-	0	Parent=Os02t0735200-02
Chr02	irgsp1_rep	CDS	30675976	30676050	.	-	0	Parent=Os02t0735200-02
Chr02	irgsp1_rep	CDS	30675797	30675888	.	-	0	Parent=Os02t0735200-02
Chr02	irgsp1_rep	CDS	30675544	30675703	.	-	1	Parent=Os02t0735200-02
Chr02	irgsp1_rep	CDS	30675208	30675360	.	-	0	Parent=Os02t0735200-02
Chr02	irgsp1_rep	three_prime_UTR	30674780	30675207	.	-	.	Parent=Os02t0735200-02
Chr02	irgsp1_rep	mRNA	30675094	30678509	.	-	.	ID=Os02t0735200-03;Name=Os02t0735200-03;Locus_id=Os02g0735200;CGSNL Gene Symbol=GLN1%3B1;CGSNL Gene Name=GLUTAMINE SYNTHETASE 1%3B1;Oryzabase Gene Symbol Synonym(s)=OsGLN1%3B1%2C GS1%2C RGS28%2C OsGS1%3B1%2C GS1%3B1%2C OsGS%2C GS1%2C GLN1-1;Oryzabase Gene Name Synonym(s)=cytosolic glutamine synthethase 1%3B1%2C cytosolic glutamine synthase 1%2C glutamine synthetase 1%3B1%2C Glutamine synthetase%2C glutamine synthetase 1%2C glutamine synthetase shoot isozyme%2C glutamate:ammonia ligase gamma;Note=Glutamine synthetase shoot isozyme (EC 6.3.1.2) (Glutamate--ammonia ligase) (Clone lambda-GS28).;Transcript_evidence=AK061157 (DDBJ%2C Best hit);ORF_evidence=P14656 (UniProt);GO=Biological Process: glutamine biosynthetic process (GO:0006542),Biological Process: nitrogen compound metabolic process (GO:0006807),Molecular Function: catalytic activity (GO:0003824),Molecular Function: glutamate-ammonia ligase activity (GO:0004356);InterPro=Glutamine synthetase%2C catalytic domain (IPR008146),Glutamine synthetase%2C beta-Grasp (IPR008147),Glutamine synthetase/guanido kinase%2C catalytic domain (IPR014746);NIAS_FLcDNA=006-208-G06;Oryzabase=8994;TENOR=Os02t0735200-03
Chr02	irgsp1_rep	five_prime_UTR	30678419	30678509	.	-	.	Parent=Os02t0735200-03
Chr02	irgsp1_rep	CDS	30678345	30678418	.	-	0	Parent=Os02t0735200-03
Chr02	irgsp1_rep	CDS	30677615	30677654	.	-	1	Parent=Os02t0735200-03
Chr02	irgsp1_rep	CDS	30677309	30677412	.	-	0	Parent=Os02t0735200-03
Chr02	irgsp1_rep	CDS	30677152	30677200	.	-	1	Parent=Os02t0735200-03
Chr02	irgsp1_rep	CDS	30676625	30676731	.	-	0	Parent=Os02t0735200-03
Chr02	irgsp1_rep	CDS	30676423	30676510	.	-	1	Parent=Os02t0735200-03
Chr02	irgsp1_rep	CDS	30676178	30676306	.	-	0	Parent=Os02t0735200-03
Chr02	irgsp1_rep	CDS	30675976	30676050	.	-	0	Parent=Os02t0735200-03
Chr02	irgsp1_rep	CDS	30675797	30675888	.	-	0	Parent=Os02t0735200-03
Chr02	irgsp1_rep	CDS	30675544	30675703	.	-	1	Parent=Os02t0735200-03
Chr02	irgsp1_rep	CDS	30675208	30675360	.	-	0	Parent=Os02t0735200-03
Chr02	irgsp1_rep	three_prime_UTR	30675094	30675207	.	-	.	Parent=Os02t0735200-03
Chr02	irgsp1_rep	mRNA	30695351	30698335	.	+	.	ID=Os02t0735700-01;Name=Os02t0735700-01;Locus_id=Os02g0735700;Note=Similar to ankyrin repeat family protein.;Transcript_evidence=AK120217 (DDBJ%2C Best hit);ORF_evidence=NP_565274.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J013040N22;TENOR=Os02t0735700-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	30695351	30695408	.	+	.	Parent=Os02t0735700-01
Chr02	irgsp1_rep	CDS	30695409	30695697	.	+	0	Parent=Os02t0735700-01
Chr02	irgsp1_rep	CDS	30696152	30696561	.	+	2	Parent=Os02t0735700-01
Chr02	irgsp1_rep	CDS	30697206	30698087	.	+	0	Parent=Os02t0735700-01
Chr02	irgsp1_rep	three_prime_UTR	30698088	30698335	.	+	.	Parent=Os02t0735700-01
Chr02	irgsp1_rep	mRNA	30699061	30701126	.	+	.	ID=Os02t0735800-01;Name=Os02t0735800-01;Locus_id=Os02g0735800;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK065002 (DDBJ%2C Best hit);ORF_evidence=Q6Z749 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J013001E05;Expression=AK065002;TENOR=Os02t0735800-01;KEGG=Os02t0735800-01
Chr02	irgsp1_rep	CDS	30699061	30700998	.	+	0	Parent=Os02t0735800-01
Chr02	irgsp1_rep	three_prime_UTR	30700999	30701126	.	+	.	Parent=Os02t0735800-01
Chr02	irgsp1_rep	mRNA	30701964	30703636	.	-	.	ID=Os02t0735900-01;Name=Os02t0735900-01;Locus_id=Os02g0735900;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK072424 (DDBJ%2C Best hit);ORF_evidence=B6THV3 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J023096P15;Expression=AK072424;TENOR=Os02t0735900-01;KEGG=Os02t0735900-01
Chr02	irgsp1_rep	five_prime_UTR	30703635	30703636	.	-	.	Parent=Os02t0735900-01
Chr02	irgsp1_rep	CDS	30703615	30703634	.	-	0	Parent=Os02t0735900-01
Chr02	irgsp1_rep	CDS	30703062	30703194	.	-	1	Parent=Os02t0735900-01
Chr02	irgsp1_rep	CDS	30702797	30702955	.	-	0	Parent=Os02t0735900-01
Chr02	irgsp1_rep	CDS	30702349	30702510	.	-	0	Parent=Os02t0735900-01
Chr02	irgsp1_rep	three_prime_UTR	30701964	30702348	.	-	.	Parent=Os02t0735900-01
Chr02	irgsp1_rep	mRNA	30720856	30726454	.	+	.	ID=Os02t0736100-01;Name=Os02t0736100-01;Locus_id=Os02g0736100;Note=Myosin II heavy chain-like family protein.;Transcript_evidence=AK102381 (DDBJ%2C Best hit);ORF_evidence=Q6Z746 (UniProt);InterPro=Myosin II heavy chain-like (IPR009768);NIAS_FLcDNA=J033092B15;Expression=AK102381;TENOR=Os02t0736100-01;KEGG=Os02t0736100-01
Chr02	irgsp1_rep	five_prime_UTR	30720856	30721118	.	+	.	Parent=Os02t0736100-01
Chr02	irgsp1_rep	CDS	30721119	30721290	.	+	0	Parent=Os02t0736100-01
Chr02	irgsp1_rep	CDS	30721379	30721464	.	+	2	Parent=Os02t0736100-01
Chr02	irgsp1_rep	CDS	30723028	30723093	.	+	0	Parent=Os02t0736100-01
Chr02	irgsp1_rep	CDS	30723171	30723341	.	+	0	Parent=Os02t0736100-01
Chr02	irgsp1_rep	CDS	30723539	30723709	.	+	0	Parent=Os02t0736100-01
Chr02	irgsp1_rep	CDS	30723964	30724119	.	+	0	Parent=Os02t0736100-01
Chr02	irgsp1_rep	CDS	30724212	30724358	.	+	0	Parent=Os02t0736100-01
Chr02	irgsp1_rep	CDS	30724471	30724542	.	+	0	Parent=Os02t0736100-01
Chr02	irgsp1_rep	CDS	30724629	30725159	.	+	0	Parent=Os02t0736100-01
Chr02	irgsp1_rep	CDS	30725246	30725433	.	+	0	Parent=Os02t0736100-01
Chr02	irgsp1_rep	CDS	30725935	30725974	.	+	1	Parent=Os02t0736100-01
Chr02	irgsp1_rep	three_prime_UTR	30725975	30726454	.	+	.	Parent=Os02t0736100-01
Chr02	irgsp1_rep	mRNA	30725989	30726454	.	+	.	ID=Os02t0736100-02;Name=Os02t0736100-02;Locus_id=Os02g0736100;Note=Non-protein coding transcript.;Transcript_evidence=AK063849 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-122-C09;TENOR=Os02t0736100-02
Chr02	irgsp1_rep	exon	30725989	30726454	.	+	.	Parent=Os02t0736100-02
Chr02	irgsp1_rep	mRNA	30721023	30726276	.	-	.	ID=Os02t0736150-00;Name=Os02t0736150-00;Locus_id=Os02g0736150;Note=Hypothetical protein.;Transcript_evidence=tplb0041j10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0736150-00
Chr02	irgsp1_rep	five_prime_UTR	30725917	30726276	.	-	.	Parent=Os02t0736150-00
Chr02	irgsp1_rep	five_prime_UTR	30725244	30725414	.	-	.	Parent=Os02t0736150-00
Chr02	irgsp1_rep	five_prime_UTR	30724625	30725157	.	-	.	Parent=Os02t0736150-00
Chr02	irgsp1_rep	five_prime_UTR	30724457	30724536	.	-	.	Parent=Os02t0736150-00
Chr02	irgsp1_rep	five_prime_UTR	30724212	30724352	.	-	.	Parent=Os02t0736150-00
Chr02	irgsp1_rep	five_prime_UTR	30723962	30724119	.	-	.	Parent=Os02t0736150-00
Chr02	irgsp1_rep	five_prime_UTR	30723549	30723707	.	-	.	Parent=Os02t0736150-00
Chr02	irgsp1_rep	five_prime_UTR	30723162	30723347	.	-	.	Parent=Os02t0736150-00
Chr02	irgsp1_rep	five_prime_UTR	30723033	30723081	.	-	.	Parent=Os02t0736150-00
Chr02	irgsp1_rep	five_prime_UTR	30721408	30721473	.	-	.	Parent=Os02t0736150-00
Chr02	irgsp1_rep	CDS	30721378	30721407	.	-	0	Parent=Os02t0736150-00
Chr02	irgsp1_rep	CDS	30721023	30721289	.	-	0	Parent=Os02t0736150-00
Chr02	irgsp1_rep	mRNA	30729070	30736459	.	+	.	ID=Os02t0736200-01;Name=Os02t0736200-01;Locus_id=Os02g0736200;RAP-DB Gene Symbol Synonym(s)=RDR1%2C OsRDR1;RAP-DB Gene Name Synonym(s)=RNA-DEPENDENT RNA POLYMERASE 1%2C RNA-dependent RNA polymerase 1%2C Probable RNA-dependent RNA polymerase 1;CGSNL Gene Symbol=RDR1;CGSNL Gene Name=RNA-DEPENDENT RNA POLYMERASE 1;Oryzabase Gene Symbol Synonym(s)=OsRDR1;Oryzabase Gene Name Synonym(s)=RNA-dependent RNA polymerase 1%2C Probable RNA-dependent RNA polymerase 1;Note=RNA-dependent RNA polymerase%2C Regulation of endogenous genes through smRNA-mediated pathways involving DNA methylation;Transcript_evidence=Inferred from literature;ORF_evidence=Q0DXS3;GO=Molecular Function: RNA-directed RNA polymerase activity (GO:0003968);InterPro=RNA-dependent RNA polymerase%2C eukaryotic-type (IPR007855);Manual Curation=August 4%2C 2014;Literature_PMID=24980094;Oryzabase=8342;TENOR=Os02t0736200-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	30729070	30729249	.	+	.	Parent=Os02t0736200-01
Chr02	irgsp1_rep	five_prime_UTR	30730967	30731514	.	+	.	Parent=Os02t0736200-01
Chr02	irgsp1_rep	five_prime_UTR	30732325	30732886	.	+	.	Parent=Os02t0736200-01
Chr02	irgsp1_rep	CDS	30732887	30734140	.	+	0	Parent=Os02t0736200-01
Chr02	irgsp1_rep	CDS	30734610	30734763	.	+	0	Parent=Os02t0736200-01
Chr02	irgsp1_rep	CDS	30735563	30736377	.	+	2	Parent=Os02t0736200-01
Chr02	irgsp1_rep	three_prime_UTR	30736378	30736459	.	+	.	Parent=Os02t0736200-01
Chr02	irgsp1_rep	mRNA	30736690	30743639	.	-	.	ID=Os02t0736300-01;Name=Os02t0736300-01;Locus_id=Os02g0736300;Note=Membrane attack complex component/perforin/complement C9 family protein.;Transcript_evidence=AK099700 (DDBJ%2C Best hit);ORF_evidence=A2X9D1 (UniProt);InterPro=Membrane attack complex component/perforin (MACPF) domain (IPR020864);NIAS_FLcDNA=J013075C24;Expression=AK099700;TENOR=Os02t0736300-01;KEGG=Os02t0736300-01
Chr02	irgsp1_rep	five_prime_UTR	30743561	30743639	.	-	.	Parent=Os02t0736300-01
Chr02	irgsp1_rep	CDS	30743318	30743560	.	-	0	Parent=Os02t0736300-01
Chr02	irgsp1_rep	CDS	30741707	30741948	.	-	0	Parent=Os02t0736300-01
Chr02	irgsp1_rep	CDS	30740247	30740445	.	-	1	Parent=Os02t0736300-01
Chr02	irgsp1_rep	CDS	30740043	30740126	.	-	0	Parent=Os02t0736300-01
Chr02	irgsp1_rep	CDS	30738820	30739003	.	-	0	Parent=Os02t0736300-01
Chr02	irgsp1_rep	CDS	30738547	30738716	.	-	2	Parent=Os02t0736300-01
Chr02	irgsp1_rep	CDS	30738376	30738440	.	-	0	Parent=Os02t0736300-01
Chr02	irgsp1_rep	CDS	30736913	30737588	.	-	1	Parent=Os02t0736300-01
Chr02	irgsp1_rep	three_prime_UTR	30736690	30736912	.	-	.	Parent=Os02t0736300-01
Chr02	irgsp1_rep	mRNA	30745770	30749371	.	-	.	ID=Os02t0736400-01;Name=Os02t0736400-01;Locus_id=Os02g0736400;RAP-DB Gene Symbol Synonym(s)=OsDHODH1;RAP-DB Gene Name Synonym(s)=dihydroorotate dehydrogenase 1;Oryzabase Gene Symbol Synonym(s)=OsDHODH1;Oryzabase Gene Name Synonym(s)=dihydroorotate dehydrogenase 1;Note=Cytosolic dihydroorotate dehydrogenase%2C Tolerance to salt and drought%2C Nitrosative stress response;Transcript_evidence=AK065229;ORF_evidence=Q6Z744;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: oxidoreductase activity%2C acting on the CH-CH group of donors (GO:0016627),Cellular Component: cytoplasm (GO:0005737);InterPro=Aldolase-type TIM barrel (IPR013785),Dihydroorotate dehydrogenase domain (IPR005720);NIAS_FLcDNA=J013002H08;Manual Curation=July 1%2C 2019;Literature_PMID=31245237,19723241;Oryzabase=14276;Expression=AK065229;TENOR=Os02t0736400-01;KEGG=Os02t0736400-01 (EC:1.3.1.2);Subcellular location=cytosol (GO:0005829)
Chr02	irgsp1_rep	five_prime_UTR	30749290	30749371	.	-	.	Parent=Os02t0736400-01
Chr02	irgsp1_rep	CDS	30749044	30749289	.	-	0	Parent=Os02t0736400-01
Chr02	irgsp1_rep	CDS	30748000	30748263	.	-	0	Parent=Os02t0736400-01
Chr02	irgsp1_rep	CDS	30747749	30747919	.	-	0	Parent=Os02t0736400-01
Chr02	irgsp1_rep	CDS	30747364	30747476	.	-	0	Parent=Os02t0736400-01
Chr02	irgsp1_rep	CDS	30747085	30747268	.	-	1	Parent=Os02t0736400-01
Chr02	irgsp1_rep	CDS	30746707	30746816	.	-	0	Parent=Os02t0736400-01
Chr02	irgsp1_rep	CDS	30745899	30746055	.	-	1	Parent=Os02t0736400-01
Chr02	irgsp1_rep	three_prime_UTR	30745770	30745898	.	-	.	Parent=Os02t0736400-01
Chr02	irgsp1_rep	mRNA	30750588	30756512	.	-	.	ID=Os02t0736500-01;Name=Os02t0736500-01;Locus_id=Os02g0736500;Note=Nicastrin family protein.;Transcript_evidence=AK065166 (DDBJ%2C Best hit);ORF_evidence=NP_190832.3 (RefSeq);GO=Biological Process: protein processing (GO:0016485),Cellular Component: integral to membrane (GO:0016021);InterPro=Nicastrin (IPR008710);NIAS_FLcDNA=J013002C12;Expression=AK065166;TENOR=Os02t0736500-01;KEGG=Os02t0736500-01
Chr02	irgsp1_rep	five_prime_UTR	30756438	30756512	.	-	.	Parent=Os02t0736500-01
Chr02	irgsp1_rep	CDS	30756359	30756437	.	-	0	Parent=Os02t0736500-01
Chr02	irgsp1_rep	CDS	30755719	30755832	.	-	2	Parent=Os02t0736500-01
Chr02	irgsp1_rep	CDS	30755467	30755584	.	-	2	Parent=Os02t0736500-01
Chr02	irgsp1_rep	CDS	30755268	30755344	.	-	1	Parent=Os02t0736500-01
Chr02	irgsp1_rep	CDS	30755116	30755192	.	-	2	Parent=Os02t0736500-01
Chr02	irgsp1_rep	CDS	30754929	30755006	.	-	0	Parent=Os02t0736500-01
Chr02	irgsp1_rep	CDS	30754756	30754827	.	-	0	Parent=Os02t0736500-01
Chr02	irgsp1_rep	CDS	30754569	30754642	.	-	0	Parent=Os02t0736500-01
Chr02	irgsp1_rep	CDS	30754265	30754397	.	-	1	Parent=Os02t0736500-01
Chr02	irgsp1_rep	CDS	30754113	30754184	.	-	0	Parent=Os02t0736500-01
Chr02	irgsp1_rep	CDS	30753690	30753809	.	-	0	Parent=Os02t0736500-01
Chr02	irgsp1_rep	CDS	30753309	30753380	.	-	0	Parent=Os02t0736500-01
Chr02	irgsp1_rep	CDS	30752736	30752876	.	-	0	Parent=Os02t0736500-01
Chr02	irgsp1_rep	CDS	30752459	30752543	.	-	0	Parent=Os02t0736500-01
Chr02	irgsp1_rep	CDS	30751942	30752380	.	-	2	Parent=Os02t0736500-01
Chr02	irgsp1_rep	CDS	30751138	30751402	.	-	1	Parent=Os02t0736500-01
Chr02	irgsp1_rep	three_prime_UTR	30750588	30751137	.	-	.	Parent=Os02t0736500-01
Chr02	irgsp1_rep	mRNA	30752265	30756471	.	+	.	ID=Os02t0736550-00;Name=Os02t0736550-00;Locus_id=Os02g0736550;Note=Hypothetical gene.;Transcript_evidence=BT085789 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0736550-00;KEGG=Os02t0736550-00
Chr02	irgsp1_rep	five_prime_UTR	30752265	30752382	.	+	.	Parent=Os02t0736550-00
Chr02	irgsp1_rep	five_prime_UTR	30752462	30752532	.	+	.	Parent=Os02t0736550-00
Chr02	irgsp1_rep	five_prime_UTR	30752729	30752925	.	+	.	Parent=Os02t0736550-00
Chr02	irgsp1_rep	five_prime_UTR	30753668	30753820	.	+	.	Parent=Os02t0736550-00
Chr02	irgsp1_rep	five_prime_UTR	30754125	30754186	.	+	.	Parent=Os02t0736550-00
Chr02	irgsp1_rep	five_prime_UTR	30754267	30754388	.	+	.	Parent=Os02t0736550-00
Chr02	irgsp1_rep	five_prime_UTR	30754562	30754648	.	+	.	Parent=Os02t0736550-00
Chr02	irgsp1_rep	five_prime_UTR	30754768	30754818	.	+	.	Parent=Os02t0736550-00
Chr02	irgsp1_rep	five_prime_UTR	30754920	30755005	.	+	.	Parent=Os02t0736550-00
Chr02	irgsp1_rep	five_prime_UTR	30755115	30755147	.	+	.	Parent=Os02t0736550-00
Chr02	irgsp1_rep	CDS	30755148	30755199	.	+	0	Parent=Os02t0736550-00
Chr02	irgsp1_rep	CDS	30755272	30755343	.	+	2	Parent=Os02t0736550-00
Chr02	irgsp1_rep	CDS	30755466	30755566	.	+	2	Parent=Os02t0736550-00
Chr02	irgsp1_rep	three_prime_UTR	30755567	30755570	.	+	.	Parent=Os02t0736550-00
Chr02	irgsp1_rep	three_prime_UTR	30755703	30755819	.	+	.	Parent=Os02t0736550-00
Chr02	irgsp1_rep	three_prime_UTR	30756343	30756471	.	+	.	Parent=Os02t0736550-00
Chr02	irgsp1_rep	mRNA	30756675	30762754	.	+	.	ID=Os02t0736600-01;Name=Os02t0736600-01;Locus_id=Os02g0736600;Note=DEAD-like helicase%2C N-terminal domain containing protein.;Transcript_evidence=AK121498 (DDBJ%2C Best hit);ORF_evidence=XP_002865336.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C ATP-dependent%2C DEAH-box type%2C conserved site (IPR002464),ATPase%2C AAA+ type%2C core (IPR003593),Helicase-associated domain (IPR007502),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),Domain of unknown function DUF1605 (IPR011709),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J033009M20;Expression=AK121498;TENOR=Os02t0736600-01;KEGG=Os02t0736600-01
Chr02	irgsp1_rep	five_prime_UTR	30756675	30756874	.	+	.	Parent=Os02t0736600-01
Chr02	irgsp1_rep	five_prime_UTR	30756958	30756964	.	+	.	Parent=Os02t0736600-01
Chr02	irgsp1_rep	CDS	30756965	30757030	.	+	0	Parent=Os02t0736600-01
Chr02	irgsp1_rep	CDS	30757101	30757169	.	+	0	Parent=Os02t0736600-01
Chr02	irgsp1_rep	CDS	30757255	30757304	.	+	0	Parent=Os02t0736600-01
Chr02	irgsp1_rep	CDS	30757376	30757436	.	+	1	Parent=Os02t0736600-01
Chr02	irgsp1_rep	CDS	30757523	30757888	.	+	0	Parent=Os02t0736600-01
Chr02	irgsp1_rep	CDS	30758049	30758261	.	+	0	Parent=Os02t0736600-01
Chr02	irgsp1_rep	CDS	30758333	30758563	.	+	0	Parent=Os02t0736600-01
Chr02	irgsp1_rep	CDS	30759009	30759122	.	+	0	Parent=Os02t0736600-01
Chr02	irgsp1_rep	CDS	30759210	30760412	.	+	0	Parent=Os02t0736600-01
Chr02	irgsp1_rep	CDS	30760514	30761959	.	+	0	Parent=Os02t0736600-01
Chr02	irgsp1_rep	three_prime_UTR	30761960	30762018	.	+	.	Parent=Os02t0736600-01
Chr02	irgsp1_rep	three_prime_UTR	30762284	30762754	.	+	.	Parent=Os02t0736600-01
Chr02	irgsp1_rep	mRNA	30763036	30763414	.	-	.	ID=Os02t0736700-00;Name=Os02t0736700-00;Locus_id=Os02g0736700;Note=Conserved hypothetical protein.;Transcript_evidence=EU945911 (DDBJ);ORF_evidence=NP_001048056.1 (RefSeq);TENOR=Os02t0736700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	30763115	30763414	.	-	0	Parent=Os02t0736700-00
Chr02	irgsp1_rep	three_prime_UTR	30763036	30763114	.	-	.	Parent=Os02t0736700-00
Chr02	irgsp1_rep	mRNA	30763130	30764865	.	+	.	ID=Os02t0736800-01;Name=Os02t0736800-01;Locus_id=Os02g0736800;Note=Conserved hypothetical protein.;Transcript_evidence=AK073311 (DDBJ%2C Best hit);ORF_evidence=B8AI34 (UniProt);NIAS_FLcDNA=J033029M14;Oryzabase=20248;Expression=AK073311;TENOR=Os02t0736800-01;KEGG=Os02t0736800-01
Chr02	irgsp1_rep	five_prime_UTR	30763130	30763359	.	+	.	Parent=Os02t0736800-01
Chr02	irgsp1_rep	five_prime_UTR	30763460	30763546	.	+	.	Parent=Os02t0736800-01
Chr02	irgsp1_rep	CDS	30763547	30763837	.	+	0	Parent=Os02t0736800-01
Chr02	irgsp1_rep	three_prime_UTR	30763838	30764396	.	+	.	Parent=Os02t0736800-01
Chr02	irgsp1_rep	three_prime_UTR	30764471	30764865	.	+	.	Parent=Os02t0736800-01
Chr02	irgsp1_rep	mRNA	30765565	30766141	.	-	.	ID=Os02t0736900-01;Name=Os02t0736900-01;Locus_id=Os02g0736900;Note=Conserved hypothetical protein.;Transcript_evidence=AK243225 (DDBJ%2C Best hit);ORF_evidence=NP_001173144.1 (RefSeq);NIAS_FLcDNA=J100044A18;TENOR=Os02t0736900-01;KEGG=Os02t0736900-01
Chr02	irgsp1_rep	five_prime_UTR	30766140	30766141	.	-	.	Parent=Os02t0736900-01
Chr02	irgsp1_rep	CDS	30765825	30766139	.	-	0	Parent=Os02t0736900-01
Chr02	irgsp1_rep	three_prime_UTR	30765565	30765824	.	-	.	Parent=Os02t0736900-01
Chr02	irgsp1_rep	mRNA	30775901	30776228	.	+	.	ID=Os02t0737200-00;Name=Os02t0737200-00;Locus_id=Os02g0737200;Note=Conserved hypothetical protein.;Transcript_evidence=FP092068 (DDBJ);ORF_evidence=B9F2W3 (UniProt);TENOR=Os02t0737200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	30775901	30775991	.	+	.	Parent=Os02t0737200-00
Chr02	irgsp1_rep	CDS	30775992	30776222	.	+	0	Parent=Os02t0737200-00
Chr02	irgsp1_rep	three_prime_UTR	30776223	30776228	.	+	.	Parent=Os02t0737200-00
Chr02	irgsp1_rep	mRNA	30781833	30782237	.	+	.	ID=Os02t0737300-00;Name=Os02t0737300-00;Locus_id=Os02g0737300;Note=Conserved hypothetical protein.;Transcript_evidence=FP092068 (DDBJ);ORF_evidence=Q6Z736 (UniProt);TENOR=Os02t0737300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	30781833	30781923	.	+	.	Parent=Os02t0737300-00
Chr02	irgsp1_rep	CDS	30781924	30782154	.	+	0	Parent=Os02t0737300-00
Chr02	irgsp1_rep	three_prime_UTR	30782155	30782237	.	+	.	Parent=Os02t0737300-00
Chr02	irgsp1_rep	mRNA	30784648	30785350	.	+	.	ID=Os02t0737401-01;Name=Os02t0737401-01;Locus_id=Os02g0737401;Note=Hypothetical conserved gene.;Transcript_evidence=AK241122 (DDBJ%2C Best hit);ORF_evidence=Q6Z733 (UniProt);NIAS_FLcDNA=J065094O18;TENOR=Os02t0737401-01;KEGG=Os02t0737401-01
Chr02	irgsp1_rep	five_prime_UTR	30784648	30784765	.	+	.	Parent=Os02t0737401-01
Chr02	irgsp1_rep	CDS	30784766	30785080	.	+	0	Parent=Os02t0737401-01
Chr02	irgsp1_rep	three_prime_UTR	30785081	30785350	.	+	.	Parent=Os02t0737401-01
Chr02	irgsp1_rep	mRNA	30786415	30789994	.	-	.	ID=Os02t0737801-01;Name=Os02t0737801-01;Locus_id=Os02g0737801;Note=Similar to Pentatricopeptide repeat protein.;Transcript_evidence=AK288901 (DDBJ%2C Best hit);ORF_evidence=Q287U7 (UniProt);NIAS_FLcDNA=J090080K21;TENOR=Os02t0737801-01;KEGG=Os02t0737801-01
Chr02	irgsp1_rep	five_prime_UTR	30788983	30789994	.	-	.	Parent=Os02t0737801-01
Chr02	irgsp1_rep	CDS	30788698	30788982	.	-	0	Parent=Os02t0737801-01
Chr02	irgsp1_rep	three_prime_UTR	30786415	30788697	.	-	.	Parent=Os02t0737801-01
Chr02	irgsp1_rep	mRNA	30787801	30788692	.	+	.	ID=Os02t0737950-00;Name=Os02t0737950-00;Locus_id=Os02g0737950;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6Z734 (UniProt);TENOR=Os02t0737950-00
Chr02	irgsp1_rep	CDS	30787801	30787945	.	+	0	Parent=Os02t0737950-00
Chr02	irgsp1_rep	CDS	30788571	30788692	.	+	2	Parent=Os02t0737950-00
Chr02	irgsp1_rep	mRNA	30799136	30799746	.	+	.	ID=Os02t0738100-01;Name=Os02t0738100-01;Locus_id=Os02g0738100;Note=Conserved hypothetical protein.;Transcript_evidence=AK241905 (DDBJ%2C Best hit);ORF_evidence=NP_001173146.1 (RefSeq);NIAS_FLcDNA=J075038G23;TENOR=Os02t0738100-01;KEGG=Os02t0738100-01
Chr02	irgsp1_rep	five_prime_UTR	30799136	30799265	.	+	.	Parent=Os02t0738100-01
Chr02	irgsp1_rep	CDS	30799266	30799508	.	+	0	Parent=Os02t0738100-01
Chr02	irgsp1_rep	three_prime_UTR	30799509	30799746	.	+	.	Parent=Os02t0738100-01
Chr02	irgsp1_rep	mRNA	30805988	30807610	.	-	.	ID=Os02t0738200-01;Name=Os02t0738200-01;Locus_id=Os02g0738200;Oryzabase Gene Symbol Synonym(s)=OsPUB40;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 40%2C U-box protein 40;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK243317 (DDBJ%2C Best hit);ORF_evidence=NP_001147860.1 (RefSeq);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488);InterPro=U box domain (IPR003613),Armadillo-like helical (IPR011989),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J100056J12;Oryzabase=17832;TENOR=Os02t0738200-01;KEGG=Os02t0738200-01
Chr02	irgsp1_rep	five_prime_UTR	30807530	30807610	.	-	.	Parent=Os02t0738200-01
Chr02	irgsp1_rep	CDS	30806159	30807529	.	-	0	Parent=Os02t0738200-01
Chr02	irgsp1_rep	three_prime_UTR	30805988	30806158	.	-	.	Parent=Os02t0738200-01
Chr02	irgsp1_rep	mRNA	30813485	30814718	.	+	.	ID=Os02t0738300-01;Name=Os02t0738300-01;Locus_id=Os02g0738300;Note=Conserved hypothetical protein.;Transcript_evidence=AK108113 (DDBJ%2C Best hit);ORF_evidence=A3AB62 (UniProt);NIAS_FLcDNA=002-139-C02;TENOR=Os02t0738300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	30813485	30813486	.	+	.	Parent=Os02t0738300-01
Chr02	irgsp1_rep	CDS	30813487	30813770	.	+	0	Parent=Os02t0738300-01
Chr02	irgsp1_rep	CDS	30813868	30813880	.	+	1	Parent=Os02t0738300-01
Chr02	irgsp1_rep	three_prime_UTR	30813881	30814718	.	+	.	Parent=Os02t0738300-01
Chr02	irgsp1_rep	mRNA	30813742	30814647	.	-	.	ID=Os02t0738350-00;Name=Os02t0738350-00;Locus_id=Os02g0738350;Note=Similar to JHL23J11.5 protein.;Transcript_evidence=BT063418 (DDBJ);ORF_evidence=E6NU40 (UniProt);TENOR=Os02t0738350-00
Chr02	irgsp1_rep	CDS	30813742	30814647	.	-	0	Parent=Os02t0738350-00
Chr02	irgsp1_rep	mRNA	30823545	30829053	.	+	.	ID=Os02t0738400-01;Name=Os02t0738400-01;Locus_id=Os02g0738400;CGSNL Gene Symbol=CKT1;CGSNL Gene Name=CYTOKININ TOLERANT 1;Oryzabase Gene Symbol Synonym(s)=OHK5%2C HK%2C OsHK6%2C HK6%2C Crl1a%2C Ohk5%2C OsHK1%2C OsCKT1;Oryzabase Gene Name Synonym(s)=histidine kinase 6%2C His kinase 6%2C cytokinin tolerant 1;Note=Similar to Histidine kinase.;Transcript_evidence=ab initio prediction;ORF_evidence=A1A699 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: signal transduction (GO:0007165),Biological Process: phosphorylation (GO:0016310),Biological Process: peptidyl-histidine phosphorylation (GO:0018106),Cellular Component: membrane (GO:0016020),Molecular Function: two-component sensor activity (GO:0000155),Molecular Function: two-component response regulator activity (GO:0000156),Molecular Function: protein histidine kinase activity (GO:0004673),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),ATPase-like%2C ATP-binding domain (IPR003594),Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain (IPR003661),Signal transduction histidine kinase-related protein%2C C-terminal (IPR004358),Signal transduction histidine kinase%2C core (IPR005467),CHASE (IPR006189),Signal transduction histidine kinase%2C homodimeric (IPR009082),CheY-like superfamily (IPR011006);Oryzabase=8145;TENOR=Os02t0738400-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	30823545	30823808	.	+	0	Parent=Os02t0738400-01
Chr02	irgsp1_rep	CDS	30824574	30824807	.	+	0	Parent=Os02t0738400-01
Chr02	irgsp1_rep	CDS	30824916	30825085	.	+	0	Parent=Os02t0738400-01
Chr02	irgsp1_rep	CDS	30825637	30826168	.	+	1	Parent=Os02t0738400-01
Chr02	irgsp1_rep	CDS	30826254	30826305	.	+	0	Parent=Os02t0738400-01
Chr02	irgsp1_rep	CDS	30826386	30826615	.	+	2	Parent=Os02t0738400-01
Chr02	irgsp1_rep	CDS	30826809	30826907	.	+	0	Parent=Os02t0738400-01
Chr02	irgsp1_rep	CDS	30827084	30827799	.	+	0	Parent=Os02t0738400-01
Chr02	irgsp1_rep	CDS	30828123	30828605	.	+	1	Parent=Os02t0738400-01
Chr02	irgsp1_rep	CDS	30828795	30829053	.	+	1	Parent=Os02t0738400-01
Chr02	irgsp1_rep	mRNA	30823545	30829439	.	+	.	ID=Os02t0738400-02;Name=Os02t0738400-02;Locus_id=Os02g0738400;RAP-DB Gene Symbol Synonym(s)=OHK5%2C OHK5%2C Ohk5%2C OsHK1%2C OsHK6%2C HK%2C Crl1a;RAP-DB Gene Name Synonym(s)=HISTIDINE KINASE 5%2C Oryza sativa histidine kinase 5%2C histidine kinase 5%2C His kinase 6;CGSNL Gene Symbol=CKT1;CGSNL Gene Name=CYTOKININ TOLERANT 1;Oryzabase Gene Symbol Synonym(s)=OHK5%2C HK%2C OsHK6%2C HK6%2C Crl1a%2C Ohk5%2C OsHK1%2C OsCKT1;Oryzabase Gene Name Synonym(s)=histidine kinase 6%2C His kinase 6%2C cytokinin tolerant 1;Note=Histidine kinase%2C Cytokinin signaling;Transcript_evidence=BR000247 (DDBJ);ORF_evidence=A1A699 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: signal transduction (GO:0007165),Biological Process: phosphorylation (GO:0016310),Biological Process: peptidyl-histidine phosphorylation (GO:0018106),Cellular Component: membrane (GO:0016020),Molecular Function: two-component sensor activity (GO:0000155),Molecular Function: two-component response regulator activity (GO:0000156),Molecular Function: protein histidine kinase activity (GO:0004673),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),ATPase-like%2C ATP-binding domain (IPR003594),Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain (IPR003661),Signal transduction histidine kinase-related protein%2C C-terminal (IPR004358),Signal transduction histidine kinase%2C core (IPR005467),CHASE (IPR006189),Signal transduction histidine kinase%2C homodimeric (IPR009082),CheY-like superfamily (IPR011006);Manual Curation=April 5%2C 2010;Literature_PMID=16919402,17293362;Oryzabase=8145;TENOR=Os02t0738400-02
Chr02	irgsp1_rep	CDS	30823545	30823808	.	+	0	Parent=Os02t0738400-02
Chr02	irgsp1_rep	CDS	30824574	30824807	.	+	0	Parent=Os02t0738400-02
Chr02	irgsp1_rep	CDS	30824916	30825085	.	+	0	Parent=Os02t0738400-02
Chr02	irgsp1_rep	CDS	30825682	30825900	.	+	1	Parent=Os02t0738400-02
Chr02	irgsp1_rep	CDS	30825982	30826168	.	+	1	Parent=Os02t0738400-02
Chr02	irgsp1_rep	CDS	30826254	30826305	.	+	0	Parent=Os02t0738400-02
Chr02	irgsp1_rep	CDS	30826386	30826615	.	+	2	Parent=Os02t0738400-02
Chr02	irgsp1_rep	CDS	30826809	30826907	.	+	0	Parent=Os02t0738400-02
Chr02	irgsp1_rep	CDS	30827084	30827799	.	+	0	Parent=Os02t0738400-02
Chr02	irgsp1_rep	CDS	30828123	30828605	.	+	1	Parent=Os02t0738400-02
Chr02	irgsp1_rep	CDS	30828795	30829053	.	+	1	Parent=Os02t0738400-02
Chr02	irgsp1_rep	three_prime_UTR	30829054	30829439	.	+	.	Parent=Os02t0738400-02
Chr02	irgsp1_rep	mRNA	30839199	30842589	.	+	.	ID=Os02t0738600-01;Name=Os02t0738600-01;Locus_id=Os02g0738600;CGSNL Gene Symbol=GH9B8;CGSNL Gene Name=GLYCOSIDE HYDROLASE 9B8;Oryzabase Gene Symbol Synonym(s)=OsGH9B8;Oryzabase Gene Name Synonym(s)=glycoside hydrolase OsGH9B8%2C glycoside hydrolase 9B8;Note=Similar to CEL5%3DCELLULASE 5 (Fragment).;Transcript_evidence=AK099698 (DDBJ%2C Best hit);ORF_evidence=Q6Z5P2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 9 (IPR001701),Six-hairpin glycosidase-like (IPR008928),Six-hairpin glycosidase (IPR012341),Glycoside hydrolase%2C family 9%2C active site (IPR018221);NIAS_FLcDNA=J013074K14;Oryzabase=11708;Expression=AK099698;TENOR=Os02t0738600-01;KEGG=Os02t0738600-01
Chr02	irgsp1_rep	five_prime_UTR	30839199	30839316	.	+	.	Parent=Os02t0738600-01
Chr02	irgsp1_rep	CDS	30839317	30839613	.	+	0	Parent=Os02t0738600-01
Chr02	irgsp1_rep	CDS	30839694	30839906	.	+	0	Parent=Os02t0738600-01
Chr02	irgsp1_rep	CDS	30840374	30840574	.	+	0	Parent=Os02t0738600-01
Chr02	irgsp1_rep	CDS	30841339	30841593	.	+	0	Parent=Os02t0738600-01
Chr02	irgsp1_rep	CDS	30841696	30842391	.	+	0	Parent=Os02t0738600-01
Chr02	irgsp1_rep	three_prime_UTR	30842392	30842589	.	+	.	Parent=Os02t0738600-01
Chr02	irgsp1_rep	mRNA	30839410	30842595	.	-	.	ID=Os02t0738750-00;Name=Os02t0738750-00;Locus_id=Os02g0738750;Note=Hypothetical protein.;Transcript_evidence=tplb0042g22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0738750-00
Chr02	irgsp1_rep	five_prime_UTR	30842446	30842595	.	-	.	Parent=Os02t0738750-00
Chr02	irgsp1_rep	CDS	30841692	30842445	.	-	0	Parent=Os02t0738750-00
Chr02	irgsp1_rep	CDS	30841335	30841589	.	-	2	Parent=Os02t0738750-00
Chr02	irgsp1_rep	CDS	30840358	30840570	.	-	2	Parent=Os02t0738750-00
Chr02	irgsp1_rep	CDS	30839869	30839894	.	-	2	Parent=Os02t0738750-00
Chr02	irgsp1_rep	three_prime_UTR	30839693	30839868	.	-	.	Parent=Os02t0738750-00
Chr02	irgsp1_rep	three_prime_UTR	30839410	30839612	.	-	.	Parent=Os02t0738750-00
Chr02	irgsp1_rep	mRNA	30861675	30871171	.	-	.	ID=Os02t0738900-01;Name=Os02t0738900-01;Locus_id=Os02g0738900;RAP-DB Gene Symbol Synonym(s)=BC3%2C bc3%2C bc-3%2C OsDRP2B%2C DRP2B;RAP-DB Gene Name Synonym(s)=BRITTLE CULM 3%2C brittle culm3%2C brittle culm 3%2C brittle culm-3%2C dynamin-related protein 2B;CGSNL Gene Symbol=BC3;CGSNL Gene Name=BRITTLE CULM 3;Oryzabase Gene Symbol Synonym(s)=bc3%2C bc-3%2C OsDRP2B%2C DRP2B;Oryzabase Gene Name Synonym(s)=brittle culm3%2C brittle culm 3%2C brittle culm-3%2C dynamin-related protein 2B;Note=Dynamin-related protein%2C Secondary cell wall cellulose biosynthesis;Transcript_evidence=AK099699 (Genbank);ORF_evidence=Q0DXR0 (UniProt);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: protein binding (GO:0005515),Molecular Function: GTP binding (GO:0005525),Molecular Function: phospholipid binding (GO:0005543);InterPro=Dynamin central domain (IPR000375),Dynamin%2C GTPase domain (IPR001401),Pleckstrin homology domain (IPR001849),Dynamin GTPase effector (IPR003130),Pleckstrin homology-like domain (IPR011993),Dynamin%2C GTPase region%2C conserved site (IPR019762),GTPase effector domain%2C GED (IPR020850),Dynamin (IPR022812);NIAS_FLcDNA=J013074K16;Manual Curation=October 29%2C 2010;Literature_PMID=20663087;Oryzabase=515;Expression=AK099699;TENOR=Os02t0738900-01;KEGG=Os02t0738900-01 (EC:3.6.5.5)
Chr02	irgsp1_rep	five_prime_UTR	30871090	30871171	.	-	.	Parent=Os02t0738900-01
Chr02	irgsp1_rep	CDS	30870934	30871089	.	-	0	Parent=Os02t0738900-01
Chr02	irgsp1_rep	CDS	30870776	30870826	.	-	0	Parent=Os02t0738900-01
Chr02	irgsp1_rep	CDS	30870556	30870676	.	-	0	Parent=Os02t0738900-01
Chr02	irgsp1_rep	CDS	30870350	30870454	.	-	2	Parent=Os02t0738900-01
Chr02	irgsp1_rep	CDS	30869816	30869877	.	-	2	Parent=Os02t0738900-01
Chr02	irgsp1_rep	CDS	30869358	30869475	.	-	0	Parent=Os02t0738900-01
Chr02	irgsp1_rep	CDS	30868911	30869256	.	-	2	Parent=Os02t0738900-01
Chr02	irgsp1_rep	CDS	30867977	30868124	.	-	1	Parent=Os02t0738900-01
Chr02	irgsp1_rep	CDS	30867781	30867882	.	-	0	Parent=Os02t0738900-01
Chr02	irgsp1_rep	CDS	30867579	30867698	.	-	0	Parent=Os02t0738900-01
Chr02	irgsp1_rep	CDS	30866776	30866859	.	-	0	Parent=Os02t0738900-01
Chr02	irgsp1_rep	CDS	30866554	30866681	.	-	0	Parent=Os02t0738900-01
Chr02	irgsp1_rep	CDS	30866097	30866175	.	-	1	Parent=Os02t0738900-01
Chr02	irgsp1_rep	CDS	30865831	30865969	.	-	0	Parent=Os02t0738900-01
Chr02	irgsp1_rep	CDS	30865571	30865647	.	-	2	Parent=Os02t0738900-01
Chr02	irgsp1_rep	CDS	30865358	30865414	.	-	0	Parent=Os02t0738900-01
Chr02	irgsp1_rep	CDS	30865023	30865161	.	-	0	Parent=Os02t0738900-01
Chr02	irgsp1_rep	CDS	30864788	30864945	.	-	2	Parent=Os02t0738900-01
Chr02	irgsp1_rep	CDS	30864367	30864480	.	-	0	Parent=Os02t0738900-01
Chr02	irgsp1_rep	CDS	30864194	30864261	.	-	0	Parent=Os02t0738900-01
Chr02	irgsp1_rep	CDS	30863459	30863631	.	-	1	Parent=Os02t0738900-01
Chr02	irgsp1_rep	CDS	30862034	30862260	.	-	2	Parent=Os02t0738900-01
Chr02	irgsp1_rep	three_prime_UTR	30861675	30862033	.	-	.	Parent=Os02t0738900-01
Chr02	irgsp1_rep	mRNA	30861995	30864858	.	+	.	ID=Os02t0738950-00;Name=Os02t0738950-00;Locus_id=Os02g0738950;Note=Hypothetical gene.;Transcript_evidence=BT016893 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0738950-00;KEGG=Os02t0738950-00
Chr02	irgsp1_rep	five_prime_UTR	30861995	30862017	.	+	.	Parent=Os02t0738950-00
Chr02	irgsp1_rep	CDS	30862018	30862244	.	+	0	Parent=Os02t0738950-00
Chr02	irgsp1_rep	CDS	30863450	30863537	.	+	1	Parent=Os02t0738950-00
Chr02	irgsp1_rep	three_prime_UTR	30863538	30863622	.	+	.	Parent=Os02t0738950-00
Chr02	irgsp1_rep	three_prime_UTR	30864180	30864251	.	+	.	Parent=Os02t0738950-00
Chr02	irgsp1_rep	three_prime_UTR	30864353	30864475	.	+	.	Parent=Os02t0738950-00
Chr02	irgsp1_rep	three_prime_UTR	30864780	30864858	.	+	.	Parent=Os02t0738950-00
Chr02	irgsp1_rep	mRNA	30872771	30882051	.	+	.	ID=Os02t0739000-01;Name=Os02t0739000-01;Locus_id=Os02g0739000;Note=DEAD-like helicase%2C N-terminal domain containing protein.;Transcript_evidence=AK099845 (DDBJ%2C Best hit);ORF_evidence=D5KXN1 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides (GO:0016818);InterPro=Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DSH%2C C-terminal (IPR012961),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J013109D01;Expression=AK099845;TENOR=Os02t0739000-01;KEGG=Os02t0739000-01
Chr02	irgsp1_rep	five_prime_UTR	30872771	30872795	.	+	.	Parent=Os02t0739000-01
Chr02	irgsp1_rep	CDS	30872796	30873317	.	+	0	Parent=Os02t0739000-01
Chr02	irgsp1_rep	CDS	30874247	30874422	.	+	0	Parent=Os02t0739000-01
Chr02	irgsp1_rep	CDS	30874886	30874999	.	+	1	Parent=Os02t0739000-01
Chr02	irgsp1_rep	CDS	30875353	30875461	.	+	1	Parent=Os02t0739000-01
Chr02	irgsp1_rep	CDS	30875545	30875631	.	+	0	Parent=Os02t0739000-01
Chr02	irgsp1_rep	CDS	30876032	30876150	.	+	0	Parent=Os02t0739000-01
Chr02	irgsp1_rep	CDS	30876332	30876509	.	+	1	Parent=Os02t0739000-01
Chr02	irgsp1_rep	CDS	30876644	30877243	.	+	0	Parent=Os02t0739000-01
Chr02	irgsp1_rep	CDS	30877330	30877608	.	+	0	Parent=Os02t0739000-01
Chr02	irgsp1_rep	CDS	30878198	30878404	.	+	0	Parent=Os02t0739000-01
Chr02	irgsp1_rep	CDS	30878670	30879014	.	+	0	Parent=Os02t0739000-01
Chr02	irgsp1_rep	CDS	30879431	30879667	.	+	0	Parent=Os02t0739000-01
Chr02	irgsp1_rep	CDS	30880240	30880460	.	+	0	Parent=Os02t0739000-01
Chr02	irgsp1_rep	CDS	30881363	30881462	.	+	1	Parent=Os02t0739000-01
Chr02	irgsp1_rep	CDS	30881549	30881695	.	+	0	Parent=Os02t0739000-01
Chr02	irgsp1_rep	CDS	30881794	30881892	.	+	0	Parent=Os02t0739000-01
Chr02	irgsp1_rep	three_prime_UTR	30881893	30882051	.	+	.	Parent=Os02t0739000-01
Chr02	irgsp1_rep	mRNA	30878307	30882051	.	+	.	ID=Os02t0739000-02;Name=Os02t0739000-02;Locus_id=Os02g0739000;Note=Similar to predicted protein.;Transcript_evidence=AK059128 (DDBJ%2C Best hit);ORF_evidence=D5KXN1 (UniProt);GO=Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides (GO:0016818);InterPro=DSH%2C C-terminal (IPR012961);NIAS_FLcDNA=001-022-G02;Expression=AK059128;TENOR=Os02t0739000-02;KEGG=Os02t0739000-02
Chr02	irgsp1_rep	five_prime_UTR	30878307	30878308	.	+	.	Parent=Os02t0739000-02
Chr02	irgsp1_rep	CDS	30878309	30878404	.	+	0	Parent=Os02t0739000-02
Chr02	irgsp1_rep	CDS	30878670	30879014	.	+	0	Parent=Os02t0739000-02
Chr02	irgsp1_rep	CDS	30879431	30879667	.	+	0	Parent=Os02t0739000-02
Chr02	irgsp1_rep	CDS	30880240	30880460	.	+	0	Parent=Os02t0739000-02
Chr02	irgsp1_rep	CDS	30881363	30881462	.	+	1	Parent=Os02t0739000-02
Chr02	irgsp1_rep	CDS	30881549	30881695	.	+	0	Parent=Os02t0739000-02
Chr02	irgsp1_rep	CDS	30881794	30881892	.	+	0	Parent=Os02t0739000-02
Chr02	irgsp1_rep	three_prime_UTR	30881893	30882051	.	+	.	Parent=Os02t0739000-02
Chr02	irgsp1_rep	mRNA	30882052	30886269	.	-	.	ID=Os02t0739100-01;Name=Os02t0739100-01;Locus_id=Os02g0739100;Oryzabase Gene Symbol Synonym(s)=OsFH16%2C FH16;Oryzabase Gene Name Synonym(s)=formin homology 16%2C forming family protein 16%2C FH2 protein 16%2C FH2 domain protein 16;Note=Similar to Formin-like protein 16.;Transcript_evidence=AK072070 (DDBJ%2C Best hit);ORF_evidence=A3AB67 (UniProt);NIAS_FLcDNA=J013110I22;Oryzabase=21785;TENOR=Os02t0739100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	30886250	30886269	.	-	.	Parent=Os02t0739100-01
Chr02	irgsp1_rep	CDS	30885200	30886249	.	-	0	Parent=Os02t0739100-01
Chr02	irgsp1_rep	CDS	30884949	30885119	.	-	0	Parent=Os02t0739100-01
Chr02	irgsp1_rep	CDS	30883666	30883674	.	-	0	Parent=Os02t0739100-01
Chr02	irgsp1_rep	three_prime_UTR	30882052	30883665	.	-	.	Parent=Os02t0739100-01
Chr02	irgsp1_rep	mRNA	30899582	30901300	.	-	.	ID=Os02t0739400-01;Name=Os02t0739400-01;Locus_id=Os02g0739400;CGSNL Gene Symbol=GATL6;CGSNL Gene Name=GALACTURONOSYLTRANSFERASE-LIKE 6;Oryzabase Gene Symbol Synonym(s)=OsGATL6;Oryzabase Gene Name Synonym(s)=galacturonosyltransferase-like 6;Note=Similar to Avr9/Cf-9 rapidly elicited protein 231 precursor.;Transcript_evidence=AK070652 (DDBJ%2C Best hit);ORF_evidence=B6U2W6 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 8 (IPR002495);NIAS_FLcDNA=J023063C09;Oryzabase=22757;Expression=AK070652;TENOR=Os02t0739400-01;KEGG=Os02t0739400-01
Chr02	irgsp1_rep	five_prime_UTR	30901128	30901300	.	-	.	Parent=Os02t0739400-01
Chr02	irgsp1_rep	CDS	30900006	30901127	.	-	0	Parent=Os02t0739400-01
Chr02	irgsp1_rep	three_prime_UTR	30899582	30900005	.	-	.	Parent=Os02t0739400-01
Chr02	irgsp1_rep	mRNA	30918848	30922942	.	-	.	ID=Os02t0739600-01;Name=Os02t0739600-01;Locus_id=Os02g0739600;CGSNL Gene Symbol=PDHE1A;CGSNL Gene Name=PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA-1;Oryzabase Gene Symbol Synonym(s)=OsPDHE1-A;Oryzabase Gene Name Synonym(s)=pyruvate dehydrogenase E1 component subunit alpha-1;Note=Similar to Pyruvate dehydrogenase E1 component alpha subunit%2C mitochondrial precursor (EC 1.2.4.1) (PDHE1-A).;Transcript_evidence=AK098950 (DDBJ%2C Best hit),AK062242 (DDBJ%2C Best hit);ORF_evidence=NP_001150259.1 (RefSeq);GO=Biological Process: glycolysis (GO:0006096),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: intracellular membrane-bounded organelle (GO:0043231),Molecular Function: pyruvate dehydrogenase (acetyl-transferring) activity (GO:0004739),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C disulfide as acceptor (GO:0016624);InterPro=Dehydrogenase%2C E1 component (IPR001017),Pyruvate dehydrogenase (acetyl-transferring) E1 component%2C alpha subunit%2C subgroup y (IPR017597);NIAS_FLcDNA=J013058M01,001-047-E10;Oryzabase=21643;Expression=AK098950;TENOR=Os02t0739600-01;KEGG=Os02t0739600-01 (EC:1.2.4.1)
Chr02	irgsp1_rep	five_prime_UTR	30922851	30922942	.	-	.	Parent=Os02t0739600-01
Chr02	irgsp1_rep	CDS	30922169	30922850	.	-	0	Parent=Os02t0739600-01
Chr02	irgsp1_rep	CDS	30921992	30922071	.	-	2	Parent=Os02t0739600-01
Chr02	irgsp1_rep	CDS	30921390	30921467	.	-	0	Parent=Os02t0739600-01
Chr02	irgsp1_rep	CDS	30920155	30920250	.	-	0	Parent=Os02t0739600-01
Chr02	irgsp1_rep	CDS	30919996	30920067	.	-	0	Parent=Os02t0739600-01
Chr02	irgsp1_rep	CDS	30919810	30919863	.	-	0	Parent=Os02t0739600-01
Chr02	irgsp1_rep	CDS	30919650	30919715	.	-	0	Parent=Os02t0739600-01
Chr02	irgsp1_rep	CDS	30919128	30919172	.	-	0	Parent=Os02t0739600-01
Chr02	irgsp1_rep	three_prime_UTR	30918848	30919127	.	-	.	Parent=Os02t0739600-01
Chr02	irgsp1_rep	mRNA	30918850	30920070	.	+	.	ID=Os02t0739650-00;Name=Os02t0739650-00;Locus_id=Os02g0739650;Note=Hypothetical gene.;Transcript_evidence=BT016856 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0739650-00;KEGG=Os02t0739650-00
Chr02	irgsp1_rep	five_prime_UTR	30918850	30918939	.	+	.	Parent=Os02t0739650-00
Chr02	irgsp1_rep	CDS	30918940	30919185	.	+	0	Parent=Os02t0739650-00
Chr02	irgsp1_rep	CDS	30919764	30919775	.	+	0	Parent=Os02t0739650-00
Chr02	irgsp1_rep	three_prime_UTR	30919776	30919860	.	+	.	Parent=Os02t0739650-00
Chr02	irgsp1_rep	three_prime_UTR	30919992	30920070	.	+	.	Parent=Os02t0739650-00
Chr02	irgsp1_rep	mRNA	30924476	30927914	.	-	.	ID=Os02t0739700-01;Name=Os02t0739700-01;Locus_id=Os02g0739700;Oryzabase Gene Symbol Synonym(s)=Orysa%3BDEL1;Oryzabase Gene Name Synonym(s)=DP-LIKE 1;Note=E2F Family domain containing protein.;Transcript_evidence=AK111537 (DDBJ%2C Best hit);ORF_evidence=Q27W79 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: transcription factor complex (GO:0005667),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Transcription factor E2F/dimerisation partner (TDP) (IPR003316),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),E2F Family (IPR015633);NIAS_FLcDNA=J013041C09;Oryzabase=13314;Expression=AK111537;TENOR=Os02t0739700-01;KEGG=Os02t0739700-01
Chr02	irgsp1_rep	five_prime_UTR	30927877	30927914	.	-	.	Parent=Os02t0739700-01
Chr02	irgsp1_rep	CDS	30927683	30927876	.	-	0	Parent=Os02t0739700-01
Chr02	irgsp1_rep	CDS	30927475	30927595	.	-	1	Parent=Os02t0739700-01
Chr02	irgsp1_rep	CDS	30927301	30927378	.	-	0	Parent=Os02t0739700-01
Chr02	irgsp1_rep	CDS	30926783	30926848	.	-	0	Parent=Os02t0739700-01
Chr02	irgsp1_rep	CDS	30926546	30926675	.	-	0	Parent=Os02t0739700-01
Chr02	irgsp1_rep	CDS	30926387	30926454	.	-	2	Parent=Os02t0739700-01
Chr02	irgsp1_rep	CDS	30926222	30926294	.	-	0	Parent=Os02t0739700-01
Chr02	irgsp1_rep	CDS	30926056	30926117	.	-	2	Parent=Os02t0739700-01
Chr02	irgsp1_rep	CDS	30925555	30925966	.	-	0	Parent=Os02t0739700-01
Chr02	irgsp1_rep	CDS	30924691	30924812	.	-	2	Parent=Os02t0739700-01
Chr02	irgsp1_rep	three_prime_UTR	30924476	30924690	.	-	.	Parent=Os02t0739700-01
Chr02	irgsp1_rep	mRNA	30930149	30934255	.	-	.	ID=Os02t0739900-01;Name=Os02t0739900-01;Locus_id=Os02g0739900;Note=Similar to microtubule-associated protein TORTIFOLIA1.;Transcript_evidence=AK288342 (DDBJ%2C Best hit);ORF_evidence=NP_001147492.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J090023K02;TENOR=Os02t0739900-01;KEGG=Os02t0739900-01
Chr02	irgsp1_rep	five_prime_UTR	30934141	30934255	.	-	.	Parent=Os02t0739900-01
Chr02	irgsp1_rep	CDS	30933349	30934140	.	-	0	Parent=Os02t0739900-01
Chr02	irgsp1_rep	CDS	30933114	30933243	.	-	0	Parent=Os02t0739900-01
Chr02	irgsp1_rep	CDS	30932349	30932866	.	-	2	Parent=Os02t0739900-01
Chr02	irgsp1_rep	CDS	30931120	30931508	.	-	0	Parent=Os02t0739900-01
Chr02	irgsp1_rep	CDS	30930741	30930750	.	-	1	Parent=Os02t0739900-01
Chr02	irgsp1_rep	three_prime_UTR	30930149	30930740	.	-	.	Parent=Os02t0739900-01
Chr02	irgsp1_rep	mRNA	30931119	30933688	.	+	.	ID=Os02t0740001-00;Name=Os02t0740001-00;Locus_id=Os02g0740001;Note=Non-protein coding transcript.;Transcript_evidence=BT087665 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0740001-00
Chr02	irgsp1_rep	exon	30931119	30931508	.	+	.	Parent=Os02t0740001-00
Chr02	irgsp1_rep	exon	30932349	30932899	.	+	.	Parent=Os02t0740001-00
Chr02	irgsp1_rep	exon	30933121	30933241	.	+	.	Parent=Os02t0740001-00
Chr02	irgsp1_rep	exon	30933347	30933688	.	+	.	Parent=Os02t0740001-00
Chr02	irgsp1_rep	mRNA	30958609	30965222	.	-	.	ID=Os02t0740300-01;Name=Os02t0740300-01;Locus_id=Os02g0740300;Note=ATPase%2C AAA-type%2C core domain containing protein.;Transcript_evidence=AK067833 (DDBJ%2C Best hit);ORF_evidence=XP_002872681.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);NIAS_FLcDNA=J013122E14;Expression=AK067833;TENOR=Os02t0740300-01;KEGG=Os02t0740300-01
Chr02	irgsp1_rep	five_prime_UTR	30965154	30965222	.	-	.	Parent=Os02t0740300-01
Chr02	irgsp1_rep	CDS	30964872	30965153	.	-	0	Parent=Os02t0740300-01
Chr02	irgsp1_rep	CDS	30964589	30964783	.	-	0	Parent=Os02t0740300-01
Chr02	irgsp1_rep	CDS	30963951	30964081	.	-	0	Parent=Os02t0740300-01
Chr02	irgsp1_rep	CDS	30963372	30963501	.	-	1	Parent=Os02t0740300-01
Chr02	irgsp1_rep	CDS	30962975	30963276	.	-	0	Parent=Os02t0740300-01
Chr02	irgsp1_rep	CDS	30962473	30962597	.	-	1	Parent=Os02t0740300-01
Chr02	irgsp1_rep	CDS	30962192	30962235	.	-	2	Parent=Os02t0740300-01
Chr02	irgsp1_rep	CDS	30961882	30962013	.	-	0	Parent=Os02t0740300-01
Chr02	irgsp1_rep	CDS	30961354	30961431	.	-	0	Parent=Os02t0740300-01
Chr02	irgsp1_rep	CDS	30960765	30960847	.	-	0	Parent=Os02t0740300-01
Chr02	irgsp1_rep	CDS	30960381	30960503	.	-	1	Parent=Os02t0740300-01
Chr02	irgsp1_rep	CDS	30959290	30959350	.	-	1	Parent=Os02t0740300-01
Chr02	irgsp1_rep	CDS	30959061	30959210	.	-	0	Parent=Os02t0740300-01
Chr02	irgsp1_rep	three_prime_UTR	30958609	30959060	.	-	.	Parent=Os02t0740300-01
Chr02	irgsp1_rep	mRNA	30966729	30967599	.	-	.	ID=Os02t0740400-01;Name=Os02t0740400-01;Locus_id=Os02g0740400;CGSNL Gene Symbol=GELP44;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 44;Oryzabase Gene Symbol Synonym(s)=OsGELP44%2C OsGELP44a%2C OsGELP44b;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 44;Note=Similar to GSDL-motif lipase.;Transcript_evidence=AK111360 (DDBJ%2C Best hit);ORF_evidence=A2X9G0 (UniProt);NIAS_FLcDNA=002-181-H05;Oryzabase=10994;Expression=AK111360;TENOR=Os02t0740400-01;KEGG=Os02t0740400-01
Chr02	irgsp1_rep	five_prime_UTR	30967361	30967599	.	-	.	Parent=Os02t0740400-01
Chr02	irgsp1_rep	CDS	30967052	30967360	.	-	0	Parent=Os02t0740400-01
Chr02	irgsp1_rep	three_prime_UTR	30966729	30967051	.	-	.	Parent=Os02t0740400-01
Chr02	irgsp1_rep	mRNA	30965666	30967596	.	-	.	ID=Os02t0740400-02;Name=Os02t0740400-02;Locus_id=Os02g0740400;CGSNL Gene Symbol=GELP44;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 44;Oryzabase Gene Symbol Synonym(s)=OsGELP44%2C OsGELP44a%2C OsGELP44b;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 44;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK070261 (DDBJ%2C Best hit),AK099325 (DDBJ%2C Best hit);ORF_evidence=B6TGF9 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=J023042P13,J033016K19;Oryzabase=10994;Expression=AK070261;TENOR=Os02t0740400-02;KEGG=Os02t0740400-02
Chr02	irgsp1_rep	five_prime_UTR	30967361	30967596	.	-	.	Parent=Os02t0740400-02
Chr02	irgsp1_rep	CDS	30967093	30967360	.	-	0	Parent=Os02t0740400-02
Chr02	irgsp1_rep	CDS	30966864	30966994	.	-	2	Parent=Os02t0740400-02
Chr02	irgsp1_rep	CDS	30965915	30966667	.	-	0	Parent=Os02t0740400-02
Chr02	irgsp1_rep	three_prime_UTR	30965666	30965914	.	-	.	Parent=Os02t0740400-02
Chr02	irgsp1_rep	mRNA	30971674	30972728	.	+	.	ID=Os02t0740500-01;Name=Os02t0740500-01;Locus_id=Os02g0740500;Note=Conserved hypothetical protein.;Transcript_evidence=AK241299 (DDBJ%2C Best hit),AK241318 (DDBJ%2C Best hit);ORF_evidence=B8AID6 (UniProt);NIAS_FLcDNA=J065139L09,J065142F07;TENOR=Os02t0740500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	30971674	30971813	.	+	.	Parent=Os02t0740500-01
Chr02	irgsp1_rep	CDS	30971814	30971966	.	+	0	Parent=Os02t0740500-01
Chr02	irgsp1_rep	CDS	30972300	30972524	.	+	0	Parent=Os02t0740500-01
Chr02	irgsp1_rep	three_prime_UTR	30972525	30972728	.	+	.	Parent=Os02t0740500-01
Chr02	irgsp1_rep	mRNA	30974228	30974781	.	-	.	ID=Os02t0740600-01;Name=Os02t0740600-01;Locus_id=Os02g0740600;Note=Conserved hypothetical protein.;Transcript_evidence=AK107938 (DDBJ%2C Best hit);ORF_evidence=A2X9G2 (UniProt);NIAS_FLcDNA=002-135-A10;Expression=AK107938;TENOR=Os02t0740600-01;KEGG=Os02t0740600-01
Chr02	irgsp1_rep	five_prime_UTR	30974685	30974781	.	-	.	Parent=Os02t0740600-01
Chr02	irgsp1_rep	CDS	30974406	30974684	.	-	0	Parent=Os02t0740600-01
Chr02	irgsp1_rep	three_prime_UTR	30974228	30974405	.	-	.	Parent=Os02t0740600-01
Chr02	irgsp1_rep	mRNA	30980995	30982317	.	-	.	ID=Os02t0740700-01;Name=Os02t0740700-01;Locus_id=Os02g0740700;RAP-DB Gene Symbol Synonym(s)=OsMMP1;RAP-DB Gene Name Synonym(s)=Matrix metalloproteinase 1;CGSNL Gene Symbol=MMP1;CGSNL Gene Name=MATRIX METALLOPROTEINASE 1;Oryzabase Gene Symbol Synonym(s)=OsMMP1;Oryzabase Gene Name Synonym(s)=Matrix metalloproteinase 1;Note=Matrix metalloproteinase%2C Plant development%2C Symplastic apoplastic transport;Transcript_evidence=AK065964;ORF_evidence=Q6Z7S6;GO=Biological Process: proteolysis (GO:0006508),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: metallopeptidase activity (GO:0008237),Molecular Function: zinc ion binding (GO:0008270),Cellular Component: extracellular matrix (GO:0031012);InterPro=Metallopeptidase%2C catalytic domain superfamily (IPR024079),PGBD-like superfamily (IPR036365),Peptidase M10A (IPR021190),Peptidoglycan binding-like (IPR002477),Peptidase%2C metallopeptidase (IPR006026),Peptidase M10%2C metallopeptidase (IPR001818),Peptidase M10A%2C catalytic domain (IPR033739);NIAS_FLcDNA=J013046G18;Manual Curation=February 15%2C 2018;Literature_PMID=29426868;Oryzabase=22267;Expression=AK065964;TENOR=Os02t0740700-01;KEGG=Os02t0740700-01;Subcellular location=plasma membrane (GO:0005886)
Chr02	irgsp1_rep	five_prime_UTR	30982270	30982317	.	-	.	Parent=Os02t0740700-01
Chr02	irgsp1_rep	CDS	30981151	30982269	.	-	0	Parent=Os02t0740700-01
Chr02	irgsp1_rep	three_prime_UTR	30980995	30981150	.	-	.	Parent=Os02t0740700-01
Chr02	irgsp1_rep	mRNA	30986861	30988272	.	-	.	ID=Os02t0740800-01;Name=Os02t0740800-01;Locus_id=Os02g0740800;Note=Hypothetical protein.;Transcript_evidence=AK111460 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-183-C11;TENOR=Os02t0740800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	30988124	30988272	.	-	.	Parent=Os02t0740800-01
Chr02	irgsp1_rep	CDS	30986861	30988123	.	-	0	Parent=Os02t0740800-01
Chr02	irgsp1_rep	mRNA	30987024	30988403	.	+	.	ID=Os02t0740900-01;Name=Os02t0740900-01;Locus_id=Os02g0740900;Oryzabase Gene Symbol Synonym(s)=OsWD40-54;Note=WD-40 repeat containing protein.;Transcript_evidence=AK108067 (DDBJ%2C Best hit);ORF_evidence=A3AB77 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=002-138-C01;Oryzabase=10735;Expression=AK108067;TENOR=Os02t0740900-01;KEGG=Os02t0740900-01
Chr02	irgsp1_rep	five_prime_UTR	30987024	30987046	.	+	.	Parent=Os02t0740900-01
Chr02	irgsp1_rep	CDS	30987047	30988270	.	+	0	Parent=Os02t0740900-01
Chr02	irgsp1_rep	three_prime_UTR	30988271	30988403	.	+	.	Parent=Os02t0740900-01
Chr02	irgsp1_rep	mRNA	30989383	30989940	.	-	.	ID=Os02t0741000-00;Name=Os02t0741000-00;Locus_id=Os02g0741000;Note=Glutaredoxin domain containing protein.;Transcript_evidence=AK335896 (DDBJ);ORF_evidence=Q6Z0T1 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin (IPR002109),Thioredoxin-like fold (IPR012336);TENOR=Os02t0741000-00
Chr02	irgsp1_rep	five_prime_UTR	30989737	30989940	.	-	.	Parent=Os02t0741000-00
Chr02	irgsp1_rep	CDS	30989383	30989736	.	-	0	Parent=Os02t0741000-00
Chr02	irgsp1_rep	mRNA	30994374	30998795	.	+	.	ID=Os02t0741100-01;Name=Os02t0741100-01;Locus_id=Os02g0741100;Oryzabase Gene Symbol Synonym(s)=OsDjC21;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C21;Note=Similar to Chaperone protein dnaJ 16 (Protein ARG1-LIKE1) (AtARL1) (AtJ16) (AtDjB16).;Transcript_evidence=AK068712 (DDBJ%2C Best hit);ORF_evidence=NP_001149722.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=J013164G17;Oryzabase=12178;Expression=AK068712;TENOR=Os02t0741100-01;KEGG=Os02t0741100-01
Chr02	irgsp1_rep	five_prime_UTR	30994374	30994682	.	+	.	Parent=Os02t0741100-01
Chr02	irgsp1_rep	CDS	30994683	30994852	.	+	0	Parent=Os02t0741100-01
Chr02	irgsp1_rep	CDS	30995256	30995379	.	+	1	Parent=Os02t0741100-01
Chr02	irgsp1_rep	CDS	30995457	30995539	.	+	0	Parent=Os02t0741100-01
Chr02	irgsp1_rep	CDS	30995613	30995724	.	+	1	Parent=Os02t0741100-01
Chr02	irgsp1_rep	CDS	30995804	30995908	.	+	0	Parent=Os02t0741100-01
Chr02	irgsp1_rep	CDS	30996316	30996366	.	+	0	Parent=Os02t0741100-01
Chr02	irgsp1_rep	CDS	30997400	30997486	.	+	0	Parent=Os02t0741100-01
Chr02	irgsp1_rep	CDS	30997567	30997675	.	+	0	Parent=Os02t0741100-01
Chr02	irgsp1_rep	CDS	30997761	30997909	.	+	2	Parent=Os02t0741100-01
Chr02	irgsp1_rep	CDS	30997984	30998037	.	+	0	Parent=Os02t0741100-01
Chr02	irgsp1_rep	CDS	30998115	30998399	.	+	0	Parent=Os02t0741100-01
Chr02	irgsp1_rep	three_prime_UTR	30998400	30998404	.	+	.	Parent=Os02t0741100-01
Chr02	irgsp1_rep	three_prime_UTR	30998486	30998795	.	+	.	Parent=Os02t0741100-01
Chr02	irgsp1_rep	mRNA	30994447	30998861	.	+	.	ID=Os02t0741100-02;Name=Os02t0741100-02;Locus_id=Os02g0741100;Oryzabase Gene Symbol Synonym(s)=OsDjC21;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C21;Note=Similar to Chaperone protein dnaJ 16 (Protein ARG1-LIKE1) (AtARL1) (AtJ16) (AtDjB16).;Transcript_evidence=AK071144 (DDBJ%2C Best hit);ORF_evidence=NP_001149722.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=J023082B04;Oryzabase=12178;Expression=AK071144;TENOR=Os02t0741100-02;KEGG=Os02t0741100-02
Chr02	irgsp1_rep	five_prime_UTR	30994447	30994682	.	+	.	Parent=Os02t0741100-02
Chr02	irgsp1_rep	CDS	30994683	30994852	.	+	0	Parent=Os02t0741100-02
Chr02	irgsp1_rep	CDS	30995256	30995379	.	+	1	Parent=Os02t0741100-02
Chr02	irgsp1_rep	CDS	30995457	30995539	.	+	0	Parent=Os02t0741100-02
Chr02	irgsp1_rep	CDS	30995613	30995724	.	+	1	Parent=Os02t0741100-02
Chr02	irgsp1_rep	CDS	30995804	30995908	.	+	0	Parent=Os02t0741100-02
Chr02	irgsp1_rep	CDS	30996316	30996366	.	+	0	Parent=Os02t0741100-02
Chr02	irgsp1_rep	CDS	30997400	30997486	.	+	0	Parent=Os02t0741100-02
Chr02	irgsp1_rep	CDS	30997567	30997675	.	+	0	Parent=Os02t0741100-02
Chr02	irgsp1_rep	CDS	30997761	30997909	.	+	2	Parent=Os02t0741100-02
Chr02	irgsp1_rep	CDS	30997984	30998037	.	+	0	Parent=Os02t0741100-02
Chr02	irgsp1_rep	CDS	30998115	30998399	.	+	0	Parent=Os02t0741100-02
Chr02	irgsp1_rep	three_prime_UTR	30998400	30998404	.	+	.	Parent=Os02t0741100-02
Chr02	irgsp1_rep	three_prime_UTR	30998486	30998861	.	+	.	Parent=Os02t0741100-02
Chr02	irgsp1_rep	mRNA	30999911	31001635	.	+	.	ID=Os02t0741200-01;Name=Os02t0741200-01;Locus_id=Os02g0741200;Oryzabase Gene Symbol Synonym(s)=prx31;Oryzabase Gene Name Synonym(s)=class III peroxidase 31;Note=Similar to Peroxidase 65 precursor (EC 1.11.1.7) (Atperox P65) (ATP43).;Transcript_evidence=AK071385 (DDBJ%2C Best hit);ORF_evidence=NP_001151254.1 (RefSeq);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J023092C13;Oryzabase=14558;Expression=AK071385;TENOR=Os02t0741200-01;KEGG=Os02t0741200-01 (EC:1.11.1.7)
Chr02	irgsp1_rep	five_prime_UTR	30999911	30999986	.	+	.	Parent=Os02t0741200-01
Chr02	irgsp1_rep	CDS	30999987	31001339	.	+	0	Parent=Os02t0741200-01
Chr02	irgsp1_rep	three_prime_UTR	31001340	31001635	.	+	.	Parent=Os02t0741200-01
Chr02	irgsp1_rep	mRNA	31003974	31008671	.	+	.	ID=Os02t0741300-01;Name=Os02t0741300-01;Locus_id=Os02g0741300;Note=Glycoside hydrolase%2C family 47 protein.;Transcript_evidence=AK105716 (DDBJ%2C Best hit),AK120667 (DDBJ%2C Best hit);ORF_evidence=NP_564288.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020),Molecular Function: mannosyl-oligosaccharide 1%2C2-alpha-mannosidase activity (GO:0004571),Molecular Function: calcium ion binding (GO:0005509);InterPro=Glycoside hydrolase%2C family 47 (IPR001382);NIAS_FLcDNA=001-201-F04,J013160C13;Expression=AK105716;TENOR=Os02t0741300-01;KEGG=Os02t0741300-01
Chr02	irgsp1_rep	five_prime_UTR	31003974	31003991	.	+	.	Parent=Os02t0741300-01
Chr02	irgsp1_rep	CDS	31003992	31004155	.	+	0	Parent=Os02t0741300-01
Chr02	irgsp1_rep	CDS	31005076	31005118	.	+	1	Parent=Os02t0741300-01
Chr02	irgsp1_rep	CDS	31005219	31005284	.	+	0	Parent=Os02t0741300-01
Chr02	irgsp1_rep	CDS	31005380	31005441	.	+	0	Parent=Os02t0741300-01
Chr02	irgsp1_rep	CDS	31005598	31005697	.	+	1	Parent=Os02t0741300-01
Chr02	irgsp1_rep	CDS	31005797	31005979	.	+	0	Parent=Os02t0741300-01
Chr02	irgsp1_rep	CDS	31006460	31006508	.	+	0	Parent=Os02t0741300-01
Chr02	irgsp1_rep	CDS	31006596	31006775	.	+	2	Parent=Os02t0741300-01
Chr02	irgsp1_rep	CDS	31006901	31007021	.	+	2	Parent=Os02t0741300-01
Chr02	irgsp1_rep	CDS	31007119	31007200	.	+	1	Parent=Os02t0741300-01
Chr02	irgsp1_rep	CDS	31007290	31007375	.	+	0	Parent=Os02t0741300-01
Chr02	irgsp1_rep	CDS	31007518	31007618	.	+	1	Parent=Os02t0741300-01
Chr02	irgsp1_rep	CDS	31007753	31007894	.	+	2	Parent=Os02t0741300-01
Chr02	irgsp1_rep	CDS	31007995	31008145	.	+	1	Parent=Os02t0741300-01
Chr02	irgsp1_rep	CDS	31008217	31008444	.	+	0	Parent=Os02t0741300-01
Chr02	irgsp1_rep	three_prime_UTR	31008445	31008671	.	+	.	Parent=Os02t0741300-01
Chr02	irgsp1_rep	mRNA	31009240	31011527	.	-	.	ID=Os02t0741400-01;Name=Os02t0741400-01;Locus_id=Os02g0741400;Note=Conserved hypothetical protein.;Transcript_evidence=AK060525 (DDBJ%2C Best hit);ORF_evidence=B9F2X6 (UniProt);NIAS_FLcDNA=001-020-E11;TENOR=Os02t0741400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	31011462	31011527	.	-	0	Parent=Os02t0741400-01
Chr02	irgsp1_rep	CDS	31011172	31011349	.	-	0	Parent=Os02t0741400-01
Chr02	irgsp1_rep	CDS	31009569	31010818	.	-	2	Parent=Os02t0741400-01
Chr02	irgsp1_rep	CDS	31009415	31009465	.	-	0	Parent=Os02t0741400-01
Chr02	irgsp1_rep	three_prime_UTR	31009240	31009414	.	-	.	Parent=Os02t0741400-01
Chr02	irgsp1_rep	mRNA	31024618	31033605	.	-	.	ID=Os02t0741500-01;Name=Os02t0741500-01;Locus_id=Os02g0741500;Note=Ribbon-helix-helix domain containing protein.;Transcript_evidence=AK068867 (DDBJ%2C Best hit);ORF_evidence=B8AID9 (UniProt);NIAS_FLcDNA=J023002E03;Expression=AK068867;TENOR=Os02t0741500-01;KEGG=Os02t0741500-01
Chr02	irgsp1_rep	five_prime_UTR	31033418	31033605	.	-	.	Parent=Os02t0741500-01
Chr02	irgsp1_rep	CDS	31033112	31033417	.	-	0	Parent=Os02t0741500-01
Chr02	irgsp1_rep	CDS	31032873	31033019	.	-	0	Parent=Os02t0741500-01
Chr02	irgsp1_rep	CDS	31031531	31031629	.	-	0	Parent=Os02t0741500-01
Chr02	irgsp1_rep	CDS	31031218	31031346	.	-	0	Parent=Os02t0741500-01
Chr02	irgsp1_rep	CDS	31031053	31031145	.	-	0	Parent=Os02t0741500-01
Chr02	irgsp1_rep	CDS	31030909	31030974	.	-	0	Parent=Os02t0741500-01
Chr02	irgsp1_rep	CDS	31030522	31030611	.	-	0	Parent=Os02t0741500-01
Chr02	irgsp1_rep	CDS	31030358	31030435	.	-	0	Parent=Os02t0741500-01
Chr02	irgsp1_rep	CDS	31030126	31030262	.	-	0	Parent=Os02t0741500-01
Chr02	irgsp1_rep	CDS	31029609	31029717	.	-	1	Parent=Os02t0741500-01
Chr02	irgsp1_rep	CDS	31029438	31029530	.	-	0	Parent=Os02t0741500-01
Chr02	irgsp1_rep	CDS	31028806	31028854	.	-	0	Parent=Os02t0741500-01
Chr02	irgsp1_rep	CDS	31028586	31028689	.	-	2	Parent=Os02t0741500-01
Chr02	irgsp1_rep	CDS	31028502	31028507	.	-	0	Parent=Os02t0741500-01
Chr02	irgsp1_rep	three_prime_UTR	31028443	31028501	.	-	.	Parent=Os02t0741500-01
Chr02	irgsp1_rep	three_prime_UTR	31027534	31027668	.	-	.	Parent=Os02t0741500-01
Chr02	irgsp1_rep	three_prime_UTR	31027349	31027453	.	-	.	Parent=Os02t0741500-01
Chr02	irgsp1_rep	three_prime_UTR	31027099	31027212	.	-	.	Parent=Os02t0741500-01
Chr02	irgsp1_rep	three_prime_UTR	31026900	31026978	.	-	.	Parent=Os02t0741500-01
Chr02	irgsp1_rep	three_prime_UTR	31026734	31026777	.	-	.	Parent=Os02t0741500-01
Chr02	irgsp1_rep	three_prime_UTR	31026568	31026641	.	-	.	Parent=Os02t0741500-01
Chr02	irgsp1_rep	three_prime_UTR	31024832	31024934	.	-	.	Parent=Os02t0741500-01
Chr02	irgsp1_rep	three_prime_UTR	31024618	31024681	.	-	.	Parent=Os02t0741500-01
Chr02	irgsp1_rep	mRNA	31038552	31040540	.	-	.	ID=Os02t0741700-01;Name=Os02t0741700-01;Locus_id=Os02g0741700;Note=Conserved hypothetical protein.;Transcript_evidence=AK069210 (DDBJ%2C Best hit);ORF_evidence=B9F2X8 (UniProt);NIAS_FLcDNA=J023012M02;Expression=AK069210;TENOR=Os02t0741700-01;KEGG=Os02t0741700-01
Chr02	irgsp1_rep	five_prime_UTR	31040416	31040540	.	-	.	Parent=Os02t0741700-01
Chr02	irgsp1_rep	CDS	31040145	31040415	.	-	0	Parent=Os02t0741700-01
Chr02	irgsp1_rep	CDS	31039809	31040038	.	-	2	Parent=Os02t0741700-01
Chr02	irgsp1_rep	three_prime_UTR	31038552	31039808	.	-	.	Parent=Os02t0741700-01
Chr02	irgsp1_rep	mRNA	31046264	31051689	.	-	.	ID=Os02t0741800-01;Name=Os02t0741800-01;Locus_id=Os02g0741800;Note=Similar to Permease 1.;Transcript_evidence=AK073562 (DDBJ%2C Best hit);ORF_evidence=Q2A0M6 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Xanthine/uracil/vitamin C permease (IPR006043);NIAS_FLcDNA=J033042I18;Expression=AK073562;TENOR=Os02t0741800-01;KEGG=Os02t0741800-01
Chr02	irgsp1_rep	five_prime_UTR	31051423	31051689	.	-	.	Parent=Os02t0741800-01
Chr02	irgsp1_rep	CDS	31051296	31051422	.	-	0	Parent=Os02t0741800-01
Chr02	irgsp1_rep	CDS	31049898	31049995	.	-	2	Parent=Os02t0741800-01
Chr02	irgsp1_rep	CDS	31049640	31049816	.	-	0	Parent=Os02t0741800-01
Chr02	irgsp1_rep	CDS	31049455	31049555	.	-	0	Parent=Os02t0741800-01
Chr02	irgsp1_rep	CDS	31049237	31049312	.	-	1	Parent=Os02t0741800-01
Chr02	irgsp1_rep	CDS	31049100	31049159	.	-	0	Parent=Os02t0741800-01
Chr02	irgsp1_rep	CDS	31048818	31049002	.	-	0	Parent=Os02t0741800-01
Chr02	irgsp1_rep	CDS	31048625	31048721	.	-	1	Parent=Os02t0741800-01
Chr02	irgsp1_rep	CDS	31048431	31048517	.	-	0	Parent=Os02t0741800-01
Chr02	irgsp1_rep	CDS	31048282	31048340	.	-	0	Parent=Os02t0741800-01
Chr02	irgsp1_rep	CDS	31048067	31048158	.	-	1	Parent=Os02t0741800-01
Chr02	irgsp1_rep	CDS	31047090	31047167	.	-	2	Parent=Os02t0741800-01
Chr02	irgsp1_rep	CDS	31046813	31046973	.	-	2	Parent=Os02t0741800-01
Chr02	irgsp1_rep	CDS	31046503	31046721	.	-	0	Parent=Os02t0741800-01
Chr02	irgsp1_rep	three_prime_UTR	31046264	31046502	.	-	.	Parent=Os02t0741800-01
Chr02	irgsp1_rep	mRNA	31055464	31059229	.	-	.	ID=Os02t0741900-01;Name=Os02t0741900-01;Locus_id=Os02g0741900;Note=Similar to T23E23.20.;Transcript_evidence=AK068461 (DDBJ%2C Best hit);ORF_evidence=Q9LR90 (UniProt);InterPro=RNA-processing%2C Lsm domain (IPR019181);NIAS_FLcDNA=J013153P08;TENOR=Os02t0741900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	31059157	31059229	.	-	.	Parent=Os02t0741900-01
Chr02	irgsp1_rep	CDS	31059035	31059156	.	-	0	Parent=Os02t0741900-01
Chr02	irgsp1_rep	CDS	31058735	31058902	.	-	1	Parent=Os02t0741900-01
Chr02	irgsp1_rep	CDS	31057143	31057223	.	-	1	Parent=Os02t0741900-01
Chr02	irgsp1_rep	CDS	31056139	31056262	.	-	1	Parent=Os02t0741900-01
Chr02	irgsp1_rep	CDS	31055753	31055803	.	-	0	Parent=Os02t0741900-01
Chr02	irgsp1_rep	three_prime_UTR	31055464	31055752	.	-	.	Parent=Os02t0741900-01
Chr02	irgsp1_rep	mRNA	31064064	31071043	.	+	.	ID=Os02t0742000-01;Name=Os02t0742000-01;Locus_id=Os02g0742000;Note=Transcription elongation factor%2C TFIIS/CRSP70%2C N-terminal domain containing protein.;Transcript_evidence=AK072328 (DDBJ%2C Best hit);ORF_evidence=B8AIE7 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Bromo adjacent homology (BAH) domain (IPR001025),Transcription elongation factor%2C TFIIS/CRSP70%2C N-terminal%2C sub-type (IPR003617),Transcription factor IIS%2C N-terminal (IPR017923);NIAS_FLcDNA=J023037F22;Expression=AK072328;TENOR=Os02t0742000-01;KEGG=Os02t0742000-01
Chr02	irgsp1_rep	five_prime_UTR	31064064	31064492	.	+	.	Parent=Os02t0742000-01
Chr02	irgsp1_rep	CDS	31064493	31064750	.	+	0	Parent=Os02t0742000-01
Chr02	irgsp1_rep	CDS	31065715	31066083	.	+	0	Parent=Os02t0742000-01
Chr02	irgsp1_rep	CDS	31066152	31070540	.	+	0	Parent=Os02t0742000-01
Chr02	irgsp1_rep	three_prime_UTR	31070541	31071043	.	+	.	Parent=Os02t0742000-01
Chr02	irgsp1_rep	mRNA	31069218	31071043	.	+	.	ID=Os02t0742000-02;Name=Os02t0742000-02;Locus_id=Os02g0742000;Note=Hypothetical conserved gene.;Transcript_evidence=AK101261 (DDBJ%2C Best hit);ORF_evidence=NP_001048087.1 (RefSeq);NIAS_FLcDNA=J033032I07;Expression=AK101261;TENOR=Os02t0742000-02;KEGG=Os02t0742000-02
Chr02	irgsp1_rep	CDS	31069218	31070540	.	+	0	Parent=Os02t0742000-02
Chr02	irgsp1_rep	three_prime_UTR	31070541	31070587	.	+	.	Parent=Os02t0742000-02
Chr02	irgsp1_rep	three_prime_UTR	31070682	31071043	.	+	.	Parent=Os02t0742000-02
Chr02	irgsp1_rep	mRNA	31070795	31071218	.	+	.	ID=Os02t0742000-03;Name=Os02t0742000-03;Locus_id=Os02g0742000;Note=Non-protein coding transcript.;Transcript_evidence=AK058252 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-012-C03;TENOR=Os02t0742000-03
Chr02	irgsp1_rep	exon	31070795	31071218	.	+	.	Parent=Os02t0742000-03
Chr02	irgsp1_rep	mRNA	31076473	31077581	.	+	.	ID=Os02t0742050-00;Name=Os02t0742050-00;Locus_id=Os02g0742050;Note=Conserved hypothetical protein.;Transcript_evidence=CT837903 (DDBJ%2C Best hit);ORF_evidence=NP_001173147.1 (RefSeq);TENOR=Os02t0742050-00;KEGG=Os02t0742050-00
Chr02	irgsp1_rep	five_prime_UTR	31076473	31076612	.	+	.	Parent=Os02t0742050-00
Chr02	irgsp1_rep	five_prime_UTR	31076628	31076976	.	+	.	Parent=Os02t0742050-00
Chr02	irgsp1_rep	CDS	31076977	31077291	.	+	0	Parent=Os02t0742050-00
Chr02	irgsp1_rep	three_prime_UTR	31077292	31077581	.	+	.	Parent=Os02t0742050-00
Chr02	irgsp1_rep	mRNA	31076513	31077624	.	-	.	ID=Os02t0742051-01;Name=Os02t0742051-01;Locus_id=Os02g0742051;Note=Hypothetical conserved gene.;Transcript_evidence=AK241279 (DDBJ%2C Best hit);ORF_evidence=Q6Z810 (UniProt);NIAS_FLcDNA=J065135H19;TENOR=Os02t0742051-01;KEGG=Os02t0742051-01
Chr02	irgsp1_rep	five_prime_UTR	31076753	31077624	.	-	.	Parent=Os02t0742051-01
Chr02	irgsp1_rep	CDS	31076513	31076752	.	-	0	Parent=Os02t0742051-01
Chr02	irgsp1_rep	mRNA	31080741	31083766	.	+	.	ID=Os02t0742100-01;Name=Os02t0742100-01;Locus_id=Os02g0742100;Note=Conserved hypothetical protein.;Transcript_evidence=AK072122 (DDBJ%2C Best hit);ORF_evidence=B9F2Y3 (UniProt);NIAS_FLcDNA=J013123N09;TENOR=Os02t0742100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	31080741	31080741	.	+	.	Parent=Os02t0742100-01
Chr02	irgsp1_rep	CDS	31080742	31083222	.	+	0	Parent=Os02t0742100-01
Chr02	irgsp1_rep	three_prime_UTR	31083223	31083766	.	+	.	Parent=Os02t0742100-01
Chr02	irgsp1_rep	mRNA	31081560	31083917	.	+	.	ID=Os02t0742100-02;Name=Os02t0742100-02;Locus_id=Os02g0742100;Note=Conserved hypothetical protein.;Transcript_evidence=AK105721 (DDBJ%2C Best hit);ORF_evidence=Q6Z809 (UniProt);NIAS_FLcDNA=001-201-G01;Expression=AK105721;TENOR=Os02t0742100-02;KEGG=Os02t0742100-02
Chr02	irgsp1_rep	five_prime_UTR	31081560	31081560	.	+	.	Parent=Os02t0742100-02
Chr02	irgsp1_rep	CDS	31081561	31083222	.	+	0	Parent=Os02t0742100-02
Chr02	irgsp1_rep	three_prime_UTR	31083223	31083277	.	+	.	Parent=Os02t0742100-02
Chr02	irgsp1_rep	three_prime_UTR	31083371	31083917	.	+	.	Parent=Os02t0742100-02
Chr02	irgsp1_rep	mRNA	31084468	31088184	.	-	.	ID=Os02t0742200-01;Name=Os02t0742200-01;Locus_id=Os02g0742200;CGSNL Gene Symbol=RAC3;CGSNL Gene Name=RAC/ROP-TYPE GTPASE 3;Oryzabase Gene Symbol Synonym(s)=OsRac3;Oryzabase Gene Name Synonym(s)=small GTP-binding protein 3%2C Rac-like GTP-binding protein 3;Note=Small GTP-binding protein OsRac3.;Transcript_evidence=AK069345 (DDBJ%2C Best hit);ORF_evidence=Q6Z808 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Cellular Component: membrane (GO:0016020),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C Ras type (IPR020849);NIAS_FLcDNA=J023012K16;Oryzabase=6290;TENOR=Os02t0742200-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	31087940	31088184	.	-	.	Parent=Os02t0742200-01
Chr02	irgsp1_rep	CDS	31087835	31087939	.	-	0	Parent=Os02t0742200-01
Chr02	irgsp1_rep	CDS	31087393	31087480	.	-	0	Parent=Os02t0742200-01
Chr02	irgsp1_rep	CDS	31087136	31087245	.	-	2	Parent=Os02t0742200-01
Chr02	irgsp1_rep	CDS	31086963	31087026	.	-	0	Parent=Os02t0742200-01
Chr02	irgsp1_rep	CDS	31086039	31086103	.	-	2	Parent=Os02t0742200-01
Chr02	irgsp1_rep	CDS	31085804	31085869	.	-	0	Parent=Os02t0742200-01
Chr02	irgsp1_rep	CDS	31085582	31085685	.	-	0	Parent=Os02t0742200-01
Chr02	irgsp1_rep	CDS	31084824	31084866	.	-	1	Parent=Os02t0742200-01
Chr02	irgsp1_rep	three_prime_UTR	31084468	31084823	.	-	.	Parent=Os02t0742200-01
Chr02	irgsp1_rep	mRNA	31084453	31088079	.	-	.	ID=Os02t0742200-02;Name=Os02t0742200-02;Locus_id=Os02g0742200;CGSNL Gene Symbol=RAC3;CGSNL Gene Name=RAC/ROP-TYPE GTPASE 3;Oryzabase Gene Symbol Synonym(s)=OsRac3;Oryzabase Gene Name Synonym(s)=small GTP-binding protein 3%2C Rac-like GTP-binding protein 3;Note=Small GTP-binding protein OsRac3.;Transcript_evidence=AK059970 (DDBJ%2C Best hit);ORF_evidence=Q6Z808 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Cellular Component: membrane (GO:0016020),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C Ras type (IPR020849);NIAS_FLcDNA=006-211-G11;Oryzabase=6290;TENOR=Os02t0742200-02
Chr02	irgsp1_rep	five_prime_UTR	31087940	31088079	.	-	.	Parent=Os02t0742200-02
Chr02	irgsp1_rep	CDS	31087835	31087939	.	-	0	Parent=Os02t0742200-02
Chr02	irgsp1_rep	CDS	31087393	31087480	.	-	0	Parent=Os02t0742200-02
Chr02	irgsp1_rep	CDS	31087136	31087245	.	-	2	Parent=Os02t0742200-02
Chr02	irgsp1_rep	CDS	31086963	31087026	.	-	0	Parent=Os02t0742200-02
Chr02	irgsp1_rep	CDS	31086039	31086103	.	-	2	Parent=Os02t0742200-02
Chr02	irgsp1_rep	CDS	31085804	31085869	.	-	0	Parent=Os02t0742200-02
Chr02	irgsp1_rep	CDS	31085582	31085685	.	-	0	Parent=Os02t0742200-02
Chr02	irgsp1_rep	CDS	31084824	31084866	.	-	1	Parent=Os02t0742200-02
Chr02	irgsp1_rep	three_prime_UTR	31084453	31084823	.	-	.	Parent=Os02t0742200-02
Chr02	irgsp1_rep	mRNA	31095945	31096528	.	+	.	ID=Os02t0742351-00;Name=Os02t0742351-00;Locus_id=Os02g0742351;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os02t0742351-00;KEGG=Os02t0742351-00
Chr02	irgsp1_rep	CDS	31095945	31096159	.	+	0	Parent=Os02t0742351-00
Chr02	irgsp1_rep	CDS	31096456	31096528	.	+	1	Parent=Os02t0742351-00
Chr02	irgsp1_rep	mRNA	31096226	31097746	.	-	.	ID=Os02t0742500-01;Name=Os02t0742500-01;Locus_id=Os02g0742500;Oryzabase Gene Symbol Synonym(s)=OsDegp3%2C DEGP3%2C OsDeg9.1;Oryzabase Gene Name Synonym(s)=Deg protease 3%2C DEG PROTEASE 3%2C Protease Do-like 9;Note=Similar to DEGP9 (DEGP PROTEASE 9)%3B serine-type peptidase/ trypsin.;Transcript_evidence=AK242466 (DDBJ%2C Best hit);ORF_evidence=NP_568577.1 (RefSeq);InterPro=Serine endopeptidase DegP2 (IPR015724);NIAS_FLcDNA=J080302A03;Oryzabase=20079;TENOR=Os02t0742500-01;KEGG=Os02t0742500-01
Chr02	irgsp1_rep	CDS	31097717	31097746	.	-	0	Parent=Os02t0742500-01
Chr02	irgsp1_rep	CDS	31097254	31097358	.	-	0	Parent=Os02t0742500-01
Chr02	irgsp1_rep	CDS	31096623	31096721	.	-	0	Parent=Os02t0742500-01
Chr02	irgsp1_rep	three_prime_UTR	31096226	31096622	.	-	.	Parent=Os02t0742500-01
Chr02	irgsp1_rep	mRNA	31100037	31100726	.	+	.	ID=Os02t0742550-00;Name=Os02t0742550-00;Locus_id=Os02g0742550;Note=Non-protein coding transcript.;Transcript_evidence=BT083575 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0742550-00
Chr02	irgsp1_rep	exon	31100037	31100120	.	+	.	Parent=Os02t0742550-00
Chr02	irgsp1_rep	exon	31100600	31100726	.	+	.	Parent=Os02t0742550-00
Chr02	irgsp1_rep	mRNA	31111841	31114590	.	+	.	ID=Os02t0742700-00;Name=Os02t0742700-00;Locus_id=Os02g0742700;Note=Conserved hypothetical protein.;Transcript_evidence=CT835373 (DDBJ%2C Best hit);ORF_evidence=NP_001048090.1 (RefSeq);TENOR=Os02t0742700-00;KEGG=Os02t0742700-00
Chr02	irgsp1_rep	five_prime_UTR	31111841	31112156	.	+	.	Parent=Os02t0742700-00
Chr02	irgsp1_rep	CDS	31112157	31112293	.	+	0	Parent=Os02t0742700-00
Chr02	irgsp1_rep	CDS	31112434	31112487	.	+	1	Parent=Os02t0742700-00
Chr02	irgsp1_rep	CDS	31112583	31112756	.	+	1	Parent=Os02t0742700-00
Chr02	irgsp1_rep	CDS	31112932	31113037	.	+	1	Parent=Os02t0742700-00
Chr02	irgsp1_rep	CDS	31113153	31113194	.	+	0	Parent=Os02t0742700-00
Chr02	irgsp1_rep	CDS	31113275	31113331	.	+	0	Parent=Os02t0742700-00
Chr02	irgsp1_rep	CDS	31113917	31114357	.	+	0	Parent=Os02t0742700-00
Chr02	irgsp1_rep	three_prime_UTR	31114358	31114590	.	+	.	Parent=Os02t0742700-00
Chr02	irgsp1_rep	mRNA	31120649	31124019	.	-	.	ID=Os02t0742800-01;Name=Os02t0742800-01;Locus_id=Os02g0742800;Note=Conserved hypothetical protein.;Transcript_evidence=AK106279 (DDBJ%2C Best hit);ORF_evidence=B9F2Y7 (UniProt);NIAS_FLcDNA=002-100-H11;Expression=AK106279;TENOR=Os02t0742800-01;KEGG=Os02t0742800-01
Chr02	irgsp1_rep	five_prime_UTR	31124019	31124019	.	-	.	Parent=Os02t0742800-01
Chr02	irgsp1_rep	CDS	31123980	31124018	.	-	0	Parent=Os02t0742800-01
Chr02	irgsp1_rep	CDS	31123812	31123902	.	-	0	Parent=Os02t0742800-01
Chr02	irgsp1_rep	CDS	31123666	31123691	.	-	2	Parent=Os02t0742800-01
Chr02	irgsp1_rep	CDS	31123480	31123565	.	-	0	Parent=Os02t0742800-01
Chr02	irgsp1_rep	CDS	31122589	31122852	.	-	1	Parent=Os02t0742800-01
Chr02	irgsp1_rep	CDS	31122322	31122463	.	-	1	Parent=Os02t0742800-01
Chr02	irgsp1_rep	CDS	31122103	31122198	.	-	0	Parent=Os02t0742800-01
Chr02	irgsp1_rep	CDS	31121398	31121991	.	-	0	Parent=Os02t0742800-01
Chr02	irgsp1_rep	CDS	31120938	31121255	.	-	0	Parent=Os02t0742800-01
Chr02	irgsp1_rep	three_prime_UTR	31120649	31120937	.	-	.	Parent=Os02t0742800-01
Chr02	irgsp1_rep	mRNA	31127172	31129535	.	-	.	ID=Os02t0742900-01;Name=Os02t0742900-01;Locus_id=Os02g0742900;Note=Similar to Kinesin-like protein.;Transcript_evidence=AK064545 (DDBJ%2C Best hit);ORF_evidence=NP_566931.1 (RefSeq);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752),Kinesin%2C motor region%2C conserved site (IPR019821);NIAS_FLcDNA=002-112-B03;TENOR=Os02t0742900-01
Chr02	irgsp1_rep	five_prime_UTR	31129348	31129535	.	-	.	Parent=Os02t0742900-01
Chr02	irgsp1_rep	five_prime_UTR	31129254	31129260	.	-	.	Parent=Os02t0742900-01
Chr02	irgsp1_rep	CDS	31129125	31129253	.	-	0	Parent=Os02t0742900-01
Chr02	irgsp1_rep	CDS	31128558	31128704	.	-	0	Parent=Os02t0742900-01
Chr02	irgsp1_rep	CDS	31128308	31128460	.	-	0	Parent=Os02t0742900-01
Chr02	irgsp1_rep	CDS	31127959	31128209	.	-	0	Parent=Os02t0742900-01
Chr02	irgsp1_rep	CDS	31127314	31127486	.	-	1	Parent=Os02t0742900-01
Chr02	irgsp1_rep	CDS	31127172	31127231	.	-	2	Parent=Os02t0742900-01
Chr02	irgsp1_rep	mRNA	31141034	31142384	.	+	.	ID=Os02t0743100-00;Name=Os02t0743100-00;Locus_id=Os02g0743100;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=BT060464 (DDBJ);ORF_evidence=B6TV57 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os02t0743100-00;KEGG=Os02t0743100-00
Chr02	irgsp1_rep	five_prime_UTR	31141034	31141080	.	+	.	Parent=Os02t0743100-00
Chr02	irgsp1_rep	CDS	31141081	31142271	.	+	0	Parent=Os02t0743100-00
Chr02	irgsp1_rep	three_prime_UTR	31142272	31142384	.	+	.	Parent=Os02t0743100-00
Chr02	irgsp1_rep	mRNA	31145280	31146137	.	-	.	ID=Os02t0743200-01;Name=Os02t0743200-01;Locus_id=Os02g0743200;Note=Conserved hypothetical protein.;Transcript_evidence=AK108304 (DDBJ%2C Best hit);ORF_evidence=A3AB98 (UniProt);NIAS_FLcDNA=002-141-F04;Expression=AK108304;TENOR=Os02t0743200-01;KEGG=Os02t0743200-01
Chr02	irgsp1_rep	five_prime_UTR	31146101	31146137	.	-	.	Parent=Os02t0743200-01
Chr02	irgsp1_rep	CDS	31145585	31146100	.	-	0	Parent=Os02t0743200-01
Chr02	irgsp1_rep	three_prime_UTR	31145280	31145584	.	-	.	Parent=Os02t0743200-01
Chr02	irgsp1_rep	mRNA	31158979	31161998	.	-	.	ID=Os02t0743400-01;Name=Os02t0743400-01;Locus_id=Os02g0743400;RAP-DB Gene Symbol Synonym(s)=OsPIN1b%2C REH1;RAP-DB Gene Name Synonym(s)=PIN-FORMED1b;CGSNL Gene Symbol=PIN1B;CGSNL Gene Name=PIN PROTEIN 1B;Oryzabase Gene Symbol Synonym(s)=PIN1A%2C OsPIN1A%2C OsPIN1a%2C REH1%2C OsPIN1%2C OsPIN1b%2C REH1/OsPIN1;Oryzabase Gene Name Synonym(s)=PIN PROTEIN 1A%2C the rice homolog of A. thaliana EIR1%2C PIN-FORMED 1b%2C PIN-formed 1%2C rice ethylene insensitive root 1;Note=PIN protein%2C Auxin efflux carrier%2C Auxin transport and signaling%2C "Root%2C shoot and inflorescence development";Transcript_evidence=AK099634,AK102343;ORF_evidence=Q5SMQ9;GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral component of membrane (GO:0016021);InterPro=Membrane transport protein (IPR004776),Auxin efflux carrier%2C plant type (IPR014024);NIAS_FLcDNA=J013059F15,J033091B16;Manual Curation=August 16%2C 2019;Literature_PMID=31410483,9679062;Oryzabase=6762;Expression=AK099634;TENOR=Os02t0743400-01;KEGG=Os02t0743400-01
Chr02	irgsp1_rep	five_prime_UTR	31161850	31161998	.	-	.	Parent=Os02t0743400-01
Chr02	irgsp1_rep	CDS	31160724	31161849	.	-	0	Parent=Os02t0743400-01
Chr02	irgsp1_rep	CDS	31160354	31160627	.	-	2	Parent=Os02t0743400-01
Chr02	irgsp1_rep	CDS	31160154	31160239	.	-	1	Parent=Os02t0743400-01
Chr02	irgsp1_rep	CDS	31159903	31160060	.	-	2	Parent=Os02t0743400-01
Chr02	irgsp1_rep	CDS	31159535	31159611	.	-	0	Parent=Os02t0743400-01
Chr02	irgsp1_rep	CDS	31159384	31159450	.	-	1	Parent=Os02t0743400-01
Chr02	irgsp1_rep	three_prime_UTR	31158979	31159383	.	-	.	Parent=Os02t0743400-01
Chr02	irgsp1_rep	mRNA	31158954	31161892	.	+	.	ID=Os02t0743450-00;Name=Os02t0743450-00;Locus_id=Os02g0743450;Note=Hypothetical protein.;Transcript_evidence=AK357068 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0743450-00
Chr02	irgsp1_rep	five_prime_UTR	31158954	31159368	.	+	.	Parent=Os02t0743450-00
Chr02	irgsp1_rep	CDS	31159369	31159449	.	+	0	Parent=Os02t0743450-00
Chr02	irgsp1_rep	CDS	31159534	31159610	.	+	0	Parent=Os02t0743450-00
Chr02	irgsp1_rep	CDS	31159902	31160057	.	+	1	Parent=Os02t0743450-00
Chr02	irgsp1_rep	CDS	31160151	31160232	.	+	1	Parent=Os02t0743450-00
Chr02	irgsp1_rep	CDS	31160338	31160610	.	+	0	Parent=Os02t0743450-00
Chr02	irgsp1_rep	CDS	31160709	31160741	.	+	0	Parent=Os02t0743450-00
Chr02	irgsp1_rep	three_prime_UTR	31160742	31161892	.	+	.	Parent=Os02t0743450-00
Chr02	irgsp1_rep	mRNA	31171975	31180079	.	+	.	ID=Os02t0743500-01;Name=Os02t0743500-01;Locus_id=Os02g0743500;CGSNL Gene Symbol=DSM1;CGSNL Gene Name=DROUGHT-HYPERSENSITIVE MUTANT 1;Oryzabase Gene Symbol Synonym(s)=OsDSM1;Oryzabase Gene Name Synonym(s)=drought-hypersensitive mutant1;Note=Similar to EDR1.;Transcript_evidence=AK100319 (DDBJ%2C Best hit);ORF_evidence=Q1SMZ9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J023079B22;Oryzabase=22710;Expression=AK100319;TENOR=Os02t0743500-01;KEGG=Os02t0743500-01
Chr02	irgsp1_rep	five_prime_UTR	31171975	31172031	.	+	.	Parent=Os02t0743500-01
Chr02	irgsp1_rep	five_prime_UTR	31172451	31172492	.	+	.	Parent=Os02t0743500-01
Chr02	irgsp1_rep	CDS	31172493	31172741	.	+	0	Parent=Os02t0743500-01
Chr02	irgsp1_rep	CDS	31173461	31173901	.	+	0	Parent=Os02t0743500-01
Chr02	irgsp1_rep	CDS	31174206	31174309	.	+	0	Parent=Os02t0743500-01
Chr02	irgsp1_rep	CDS	31174507	31175891	.	+	1	Parent=Os02t0743500-01
Chr02	irgsp1_rep	CDS	31176015	31176055	.	+	2	Parent=Os02t0743500-01
Chr02	irgsp1_rep	CDS	31176572	31176640	.	+	0	Parent=Os02t0743500-01
Chr02	irgsp1_rep	CDS	31176842	31176942	.	+	0	Parent=Os02t0743500-01
Chr02	irgsp1_rep	CDS	31177254	31177332	.	+	1	Parent=Os02t0743500-01
Chr02	irgsp1_rep	CDS	31177446	31177544	.	+	0	Parent=Os02t0743500-01
Chr02	irgsp1_rep	CDS	31177626	31177694	.	+	0	Parent=Os02t0743500-01
Chr02	irgsp1_rep	CDS	31179116	31179165	.	+	0	Parent=Os02t0743500-01
Chr02	irgsp1_rep	CDS	31179256	31179432	.	+	1	Parent=Os02t0743500-01
Chr02	irgsp1_rep	CDS	31179552	31179663	.	+	1	Parent=Os02t0743500-01
Chr02	irgsp1_rep	three_prime_UTR	31179664	31180079	.	+	.	Parent=Os02t0743500-01
Chr02	irgsp1_rep	mRNA	31171976	31180014	.	+	.	ID=Os02t0743500-02;Name=Os02t0743500-02;Locus_id=Os02g0743500;RAP-DB Gene Symbol Synonym(s)=DSM1;RAP-DB Gene Name Synonym(s)=drought-hypersensitive mutant1;CGSNL Gene Symbol=DSM1;CGSNL Gene Name=DROUGHT-HYPERSENSITIVE MUTANT 1;Oryzabase Gene Symbol Synonym(s)=OsDSM1;Oryzabase Gene Name Synonym(s)=drought-hypersensitive mutant1;Note=MAPK kinase kinase (MAPKKK)%2C Mediation of drought resistance%2C Regulation of scavenging of ROS;Transcript_evidence=AK102767;ORF_evidence=Q6Z2V3;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),Protein kinase domain (IPR000719),Serine-threonine/tyrosine-protein kinase%2C catalytic domain (IPR001245),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J033107F14;Manual Curation=June 17%2C 2019;Literature_PMID=20007444;Oryzabase=22710;Expression=AK102767;TENOR=Os02t0743500-02;Subcellular location=nucleus (GO:0005634)
Chr02	irgsp1_rep	five_prime_UTR	31171976	31172132	.	+	.	Parent=Os02t0743500-02
Chr02	irgsp1_rep	CDS	31172133	31172741	.	+	0	Parent=Os02t0743500-02
Chr02	irgsp1_rep	CDS	31173461	31173901	.	+	0	Parent=Os02t0743500-02
Chr02	irgsp1_rep	CDS	31174206	31174309	.	+	0	Parent=Os02t0743500-02
Chr02	irgsp1_rep	CDS	31174507	31175891	.	+	1	Parent=Os02t0743500-02
Chr02	irgsp1_rep	CDS	31176015	31176055	.	+	2	Parent=Os02t0743500-02
Chr02	irgsp1_rep	CDS	31176572	31176640	.	+	0	Parent=Os02t0743500-02
Chr02	irgsp1_rep	CDS	31176842	31176942	.	+	0	Parent=Os02t0743500-02
Chr02	irgsp1_rep	CDS	31177254	31177332	.	+	1	Parent=Os02t0743500-02
Chr02	irgsp1_rep	CDS	31177446	31177544	.	+	0	Parent=Os02t0743500-02
Chr02	irgsp1_rep	CDS	31177626	31177694	.	+	0	Parent=Os02t0743500-02
Chr02	irgsp1_rep	CDS	31179116	31179165	.	+	0	Parent=Os02t0743500-02
Chr02	irgsp1_rep	CDS	31179256	31179432	.	+	1	Parent=Os02t0743500-02
Chr02	irgsp1_rep	CDS	31179552	31179663	.	+	1	Parent=Os02t0743500-02
Chr02	irgsp1_rep	three_prime_UTR	31179664	31180014	.	+	.	Parent=Os02t0743500-02
Chr02	irgsp1_rep	mRNA	31184842	31185459	.	+	.	ID=Os02t0743600-00;Name=Os02t0743600-00;Locus_id=Os02g0743600;Note=Hypothetical conserved gene.;Transcript_evidence=EU968622 (DDBJ);ORF_evidence=Q6Z2V1 (UniProt);TENOR=Os02t0743600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	31184842	31184864	.	+	.	Parent=Os02t0743600-00
Chr02	irgsp1_rep	CDS	31184865	31185332	.	+	0	Parent=Os02t0743600-00
Chr02	irgsp1_rep	three_prime_UTR	31185333	31185459	.	+	.	Parent=Os02t0743600-00
Chr02	irgsp1_rep	mRNA	31190773	31193392	.	+	.	ID=Os02t0743700-01;Name=Os02t0743700-01;Locus_id=Os02g0743700;Note=Similar to RING-H2 finger protein ATL1Q.;Transcript_evidence=AK070369 (DDBJ%2C Best hit);ORF_evidence=B6TML2 (UniProt);NIAS_FLcDNA=J023049J18;Expression=AK070369;TENOR=Os02t0743700-01;KEGG=Os02t0743700-01
Chr02	irgsp1_rep	five_prime_UTR	31190773	31191025	.	+	.	Parent=Os02t0743700-01
Chr02	irgsp1_rep	CDS	31191026	31191137	.	+	0	Parent=Os02t0743700-01
Chr02	irgsp1_rep	CDS	31191314	31191492	.	+	2	Parent=Os02t0743700-01
Chr02	irgsp1_rep	CDS	31191758	31191841	.	+	0	Parent=Os02t0743700-01
Chr02	irgsp1_rep	CDS	31192133	31192510	.	+	0	Parent=Os02t0743700-01
Chr02	irgsp1_rep	three_prime_UTR	31192511	31193392	.	+	.	Parent=Os02t0743700-01
Chr02	irgsp1_rep	mRNA	31190820	31193393	.	+	.	ID=Os02t0743700-02;Name=Os02t0743700-02;Locus_id=Os02g0743700;Note=Similar to RING-H2 finger protein ATL1Q.;Transcript_evidence=AK060092 (DDBJ%2C Best hit);ORF_evidence=B6TML2 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=006-307-D05;Expression=AK060092;TENOR=Os02t0743700-02;KEGG=Os02t0743700-02
Chr02	irgsp1_rep	five_prime_UTR	31190820	31191025	.	+	.	Parent=Os02t0743700-02
Chr02	irgsp1_rep	CDS	31191026	31191137	.	+	0	Parent=Os02t0743700-02
Chr02	irgsp1_rep	CDS	31191314	31191492	.	+	2	Parent=Os02t0743700-02
Chr02	irgsp1_rep	CDS	31191758	31191841	.	+	0	Parent=Os02t0743700-02
Chr02	irgsp1_rep	CDS	31192133	31192297	.	+	0	Parent=Os02t0743700-02
Chr02	irgsp1_rep	CDS	31193025	31193147	.	+	0	Parent=Os02t0743700-02
Chr02	irgsp1_rep	three_prime_UTR	31193148	31193393	.	+	.	Parent=Os02t0743700-02
Chr02	irgsp1_rep	mRNA	31190967	31195239	.	+	.	ID=Os02t0743700-03;Name=Os02t0743700-03;Locus_id=Os02g0743700;Note=Similar to RING-H2 finger protein ATL1Q.;Transcript_evidence=AK070302 (DDBJ%2C Best hit);ORF_evidence=B6TML2 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J023047F13;Expression=AK070302;TENOR=Os02t0743700-03;KEGG=Os02t0743700-03
Chr02	irgsp1_rep	five_prime_UTR	31190967	31191025	.	+	.	Parent=Os02t0743700-03
Chr02	irgsp1_rep	CDS	31191026	31191137	.	+	0	Parent=Os02t0743700-03
Chr02	irgsp1_rep	CDS	31191314	31191492	.	+	2	Parent=Os02t0743700-03
Chr02	irgsp1_rep	CDS	31191758	31191841	.	+	0	Parent=Os02t0743700-03
Chr02	irgsp1_rep	CDS	31192133	31192297	.	+	0	Parent=Os02t0743700-03
Chr02	irgsp1_rep	CDS	31193025	31193147	.	+	0	Parent=Os02t0743700-03
Chr02	irgsp1_rep	three_prime_UTR	31193148	31193156	.	+	.	Parent=Os02t0743700-03
Chr02	irgsp1_rep	three_prime_UTR	31194637	31195239	.	+	.	Parent=Os02t0743700-03
Chr02	irgsp1_rep	mRNA	31196699	31197703	.	-	.	ID=Os02t0743800-01;Name=Os02t0743800-01;Locus_id=Os02g0743800;Note=Hypothetical conserved gene.;Transcript_evidence=AK111254 (DDBJ%2C Best hit);ORF_evidence=B6T728 (UniProt);NIAS_FLcDNA=002-180-E05;Expression=AK111254;TENOR=Os02t0743800-01;KEGG=Os02t0743800-01
Chr02	irgsp1_rep	five_prime_UTR	31197618	31197703	.	-	.	Parent=Os02t0743800-01
Chr02	irgsp1_rep	CDS	31197027	31197617	.	-	0	Parent=Os02t0743800-01
Chr02	irgsp1_rep	three_prime_UTR	31196699	31197026	.	-	.	Parent=Os02t0743800-01
Chr02	irgsp1_rep	mRNA	31194269	31197697	.	-	.	ID=Os02t0743800-02;Name=Os02t0743800-02;Locus_id=Os02g0743800;Note=CS domain containing protein.;Transcript_evidence=AK064134 (DDBJ%2C Best hit);ORF_evidence=B8AIF5 (UniProt);InterPro=CS-like domain (IPR007052),HSP20-like chaperone (IPR008978),CS domain (IPR017447);NIAS_FLcDNA=002-102-G03;Expression=AK064134;TENOR=Os02t0743800-02;KEGG=Os02t0743800-02
Chr02	irgsp1_rep	five_prime_UTR	31197618	31197697	.	-	.	Parent=Os02t0743800-02
Chr02	irgsp1_rep	CDS	31197035	31197617	.	-	0	Parent=Os02t0743800-02
Chr02	irgsp1_rep	CDS	31195405	31195583	.	-	2	Parent=Os02t0743800-02
Chr02	irgsp1_rep	CDS	31195231	31195279	.	-	0	Parent=Os02t0743800-02
Chr02	irgsp1_rep	CDS	31194946	31195124	.	-	2	Parent=Os02t0743800-02
Chr02	irgsp1_rep	CDS	31194791	31194853	.	-	0	Parent=Os02t0743800-02
Chr02	irgsp1_rep	CDS	31194633	31194653	.	-	0	Parent=Os02t0743800-02
Chr02	irgsp1_rep	three_prime_UTR	31194269	31194632	.	-	.	Parent=Os02t0743800-02
Chr02	irgsp1_rep	mRNA	31199014	31199784	.	-	.	ID=Os02t0743900-00;Name=Os02t0743900-00;Locus_id=Os02g0743900;CGSNL Gene Symbol=CASP4;CGSNL Gene Name=CASPARIAN STRIP DOMAIN PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OsCASP4;Oryzabase Gene Name Synonym(s)=Casparian strip domain protein 4;Note=Similar to plant integral membrane protein TIGR01569 containing protein.;Transcript_evidence=EU961524 (DDBJ);ORF_evidence=C5Z7E3 (UniProt);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup (IPR006459),Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);Oryzabase=23338;TENOR=Os02t0743900-00;KEGG=Os02t0743900-00
Chr02	irgsp1_rep	CDS	31199519	31199784	.	-	0	Parent=Os02t0743900-00
Chr02	irgsp1_rep	CDS	31199308	31199431	.	-	1	Parent=Os02t0743900-00
Chr02	irgsp1_rep	CDS	31199014	31199229	.	-	0	Parent=Os02t0743900-00
Chr02	irgsp1_rep	mRNA	31202228	31203685	.	+	.	ID=Os02t0744000-01;Name=Os02t0744000-01;Locus_id=Os02g0744000;Note=Similar to NDF6 (NDH DEPENDENT FLOW 6).;Transcript_evidence=AK064898 (DDBJ%2C Best hit),AK104827 (DDBJ%2C Best hit);ORF_evidence=NP_001117306.1 (RefSeq);NIAS_FLcDNA=J013000L12,001-041-G04;TENOR=Os02t0744000-01
Chr02	irgsp1_rep	five_prime_UTR	31202228	31202304	.	+	.	Parent=Os02t0744000-01
Chr02	irgsp1_rep	CDS	31202305	31202394	.	+	0	Parent=Os02t0744000-01
Chr02	irgsp1_rep	CDS	31202499	31202543	.	+	0	Parent=Os02t0744000-01
Chr02	irgsp1_rep	CDS	31202638	31202791	.	+	0	Parent=Os02t0744000-01
Chr02	irgsp1_rep	CDS	31202886	31202939	.	+	2	Parent=Os02t0744000-01
Chr02	irgsp1_rep	CDS	31203029	31203102	.	+	2	Parent=Os02t0744000-01
Chr02	irgsp1_rep	CDS	31203250	31203378	.	+	0	Parent=Os02t0744000-01
Chr02	irgsp1_rep	three_prime_UTR	31203379	31203685	.	+	.	Parent=Os02t0744000-01
Chr02	irgsp1_rep	mRNA	31210234	31212660	.	+	.	ID=Os02t0744100-01;Name=Os02t0744100-01;Locus_id=Os02g0744100;Note=Methyltransferase type 11 domain containing protein.;Transcript_evidence=AK061274 (DDBJ%2C Best hit);ORF_evidence=NP_564969.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Methyltransferase type 11 (IPR013216);NIAS_FLcDNA=006-212-E04;Expression=AK061274;TENOR=Os02t0744100-01;KEGG=Os02t0744100-01
Chr02	irgsp1_rep	five_prime_UTR	31210234	31210288	.	+	.	Parent=Os02t0744100-01
Chr02	irgsp1_rep	CDS	31210289	31210501	.	+	0	Parent=Os02t0744100-01
Chr02	irgsp1_rep	CDS	31210605	31210700	.	+	0	Parent=Os02t0744100-01
Chr02	irgsp1_rep	CDS	31211170	31211388	.	+	0	Parent=Os02t0744100-01
Chr02	irgsp1_rep	CDS	31211464	31211560	.	+	0	Parent=Os02t0744100-01
Chr02	irgsp1_rep	CDS	31212200	31212262	.	+	2	Parent=Os02t0744100-01
Chr02	irgsp1_rep	CDS	31212382	31212575	.	+	2	Parent=Os02t0744100-01
Chr02	irgsp1_rep	three_prime_UTR	31212576	31212660	.	+	.	Parent=Os02t0744100-01
Chr02	irgsp1_rep	mRNA	31221024	31222063	.	-	.	ID=Os02t0744150-00;Name=Os02t0744150-00;Locus_id=Os02g0744150;Note=Hypothetical gene.;Transcript_evidence=BT016845 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0744150-00
Chr02	irgsp1_rep	five_prime_UTR	31221398	31222063	.	-	.	Parent=Os02t0744150-00
Chr02	irgsp1_rep	five_prime_UTR	31221285	31221301	.	-	.	Parent=Os02t0744150-00
Chr02	irgsp1_rep	CDS	31221024	31221284	.	-	0	Parent=Os02t0744150-00
Chr02	irgsp1_rep	mRNA	31220568	31222172	.	+	.	ID=Os02t0744200-01;Name=Os02t0744200-01;Locus_id=Os02g0744200;CGSNL Gene Symbol=EXPA5;CGSNL Gene Name=ALPHA-EXPANSIN 5;Oryzabase Gene Symbol Synonym(s)=OsEXPA5%2C OsEXP5%2C osaEXPa1.20;Oryzabase Gene Name Synonym(s)=Rice expansin-5%2C Expansin-A5%2C Alpha-expansin-5;Note=Alpha-expansin OsEXPA5.;Transcript_evidence=AK073572 (DDBJ%2C Best hit),AK107334 (DDBJ%2C Best hit);ORF_evidence=Q6ZGU9 (UniProt);GO=Biological Process: plant-type cell wall organization (GO:0009664),Cellular Component: extracellular region (GO:0005576);InterPro=Expansin (IPR002963),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);NIAS_FLcDNA=J033044E11,002-126-F08;Oryzabase=9367;TENOR=Os02t0744200-01
Chr02	irgsp1_rep	five_prime_UTR	31220568	31220645	.	+	.	Parent=Os02t0744200-01
Chr02	irgsp1_rep	CDS	31220646	31220889	.	+	0	Parent=Os02t0744200-01
Chr02	irgsp1_rep	CDS	31220984	31221305	.	+	2	Parent=Os02t0744200-01
Chr02	irgsp1_rep	CDS	31221402	31221711	.	+	1	Parent=Os02t0744200-01
Chr02	irgsp1_rep	three_prime_UTR	31221712	31222172	.	+	.	Parent=Os02t0744200-01
Chr02	irgsp1_rep	mRNA	31227802	31228754	.	+	.	ID=Os02t0744501-00;Name=Os02t0744501-00;Locus_id=Os02g0744501;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001173148.1 (RefSeq);TENOR=Os02t0744501-00;KEGG=Os02t0744501-00
Chr02	irgsp1_rep	CDS	31227802	31227970	.	+	0	Parent=Os02t0744501-00
Chr02	irgsp1_rep	CDS	31228654	31228754	.	+	2	Parent=Os02t0744501-00
Chr02	irgsp1_rep	mRNA	31228398	31228830	.	-	.	ID=Os02t0744600-01;Name=Os02t0744600-01;Locus_id=Os02g0744600;CGSNL Gene Symbol=CSLA6;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE A6;Oryzabase Gene Symbol Synonym(s)=OsCslA6%2C OsCSLA6;Note=Hypothetical conserved gene.;Transcript_evidence=AK058756 (DDBJ%2C Best hit);ORF_evidence=B9F2Z3 (UniProt);NIAS_FLcDNA=001-001-B01;Oryzabase=13884;Expression=AK058756;TENOR=Os02t0744600-01;KEGG=Os02t0744600-01
Chr02	irgsp1_rep	CDS	31228756	31228830	.	-	0	Parent=Os02t0744600-01
Chr02	irgsp1_rep	three_prime_UTR	31228398	31228755	.	-	.	Parent=Os02t0744600-01
Chr02	irgsp1_rep	mRNA	31229002	31231570	.	-	.	ID=Os02t0744650-00;Name=Os02t0744650-00;Locus_id=Os02g0744650;Note=Similar to CSLA1-cellulose synthase-like family A%3B mannan synthase.;Transcript_evidence=ab initio prediction;ORF_evidence=B4FBD8 (UniProt);InterPro=Glycosyl transferase%2C family 2 (IPR001173);TENOR=Os02t0744650-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	31231466	31231570	.	-	0	Parent=Os02t0744650-00
Chr02	irgsp1_rep	CDS	31231115	31231367	.	-	0	Parent=Os02t0744650-00
Chr02	irgsp1_rep	CDS	31230104	31230214	.	-	2	Parent=Os02t0744650-00
Chr02	irgsp1_rep	CDS	31229860	31229996	.	-	2	Parent=Os02t0744650-00
Chr02	irgsp1_rep	CDS	31229635	31229748	.	-	0	Parent=Os02t0744650-00
Chr02	irgsp1_rep	CDS	31229002	31229487	.	-	0	Parent=Os02t0744650-00
Chr02	irgsp1_rep	mRNA	31229065	31229751	.	+	.	ID=Os02t0744666-00;Name=Os02t0744666-00;Locus_id=Os02g0744666;Note=Hypothetical protein.;Transcript_evidence=EU946219 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0744666-00
Chr02	irgsp1_rep	five_prime_UTR	31229065	31229314	.	+	.	Parent=Os02t0744666-00
Chr02	irgsp1_rep	CDS	31229315	31229491	.	+	0	Parent=Os02t0744666-00
Chr02	irgsp1_rep	CDS	31229572	31229619	.	+	0	Parent=Os02t0744666-00
Chr02	irgsp1_rep	three_prime_UTR	31229620	31229751	.	+	.	Parent=Os02t0744666-00
Chr02	irgsp1_rep	mRNA	31231207	31232062	.	+	.	ID=Os02t0744682-00;Name=Os02t0744682-00;Locus_id=Os02g0744682;Note=Hypothetical protein.;Transcript_evidence=BT086854 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0744682-00
Chr02	irgsp1_rep	five_prime_UTR	31231207	31231366	.	+	.	Parent=Os02t0744682-00
Chr02	irgsp1_rep	five_prime_UTR	31231465	31231536	.	+	.	Parent=Os02t0744682-00
Chr02	irgsp1_rep	CDS	31231537	31231554	.	+	0	Parent=Os02t0744682-00
Chr02	irgsp1_rep	CDS	31231822	31232062	.	+	0	Parent=Os02t0744682-00
Chr02	irgsp1_rep	mRNA	31233292	31238210	.	-	.	ID=Os02t0744700-01;Name=Os02t0744700-01;Locus_id=Os02g0744700;CGSNL Gene Symbol=SSIIB;CGSNL Gene Name=SOLUBLE STARCH SYNTHASE IIB;Oryzabase Gene Symbol Synonym(s)=OsSSIIb%2C OsSSII-2%2C SSII-2%2C SS2%2C OsSSSIIb%2C SS2b;Oryzabase Gene Name Synonym(s)=Starch synthase-IIb%2C starch synthase IIb%2C "Soluble starch synthase 2-2%2C chloroplastic/amyloplastic"%2C Soluble starch synthase II-2%2C Starch synthase isoform zSTSII-2;Note=Similar to Starch synthase isoform zSTSII-2 (EC 2.4.1.21).;Transcript_evidence=AK066446 (DDBJ%2C Best hit);ORF_evidence=D0TZP8 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Biological Process: glucan biosynthetic process (GO:0009250),Molecular Function: starch synthase activity (GO:0009011);InterPro=Glycosyl transferase%2C family 1 (IPR001296),Glycogen/starch synthases%2C ADP-glucose type (IPR011835),Starch synthase%2C catalytic domain (IPR013534);NIAS_FLcDNA=J013060C10;Oryzabase=8103;Expression=AK066446;TENOR=Os02t0744700-01;KEGG=Os02t0744700-01 (EC:2.4.1.21)
Chr02	irgsp1_rep	five_prime_UTR	31238026	31238210	.	-	.	Parent=Os02t0744700-01
Chr02	irgsp1_rep	CDS	31238018	31238025	.	-	0	Parent=Os02t0744700-01
Chr02	irgsp1_rep	CDS	31237642	31237861	.	-	1	Parent=Os02t0744700-01
Chr02	irgsp1_rep	CDS	31236865	31237240	.	-	0	Parent=Os02t0744700-01
Chr02	irgsp1_rep	CDS	31236677	31236741	.	-	2	Parent=Os02t0744700-01
Chr02	irgsp1_rep	CDS	31236176	31236253	.	-	0	Parent=Os02t0744700-01
Chr02	irgsp1_rep	CDS	31235970	31236080	.	-	0	Parent=Os02t0744700-01
Chr02	irgsp1_rep	CDS	31235827	31235871	.	-	0	Parent=Os02t0744700-01
Chr02	irgsp1_rep	CDS	31235174	31235347	.	-	0	Parent=Os02t0744700-01
Chr02	irgsp1_rep	CDS	31233717	31234673	.	-	0	Parent=Os02t0744700-01
Chr02	irgsp1_rep	three_prime_UTR	31233292	31233716	.	-	.	Parent=Os02t0744700-01
Chr02	irgsp1_rep	mRNA	31233351	31236036	.	-	.	ID=Os02t0744700-02;Name=Os02t0744700-02;Locus_id=Os02g0744700;CGSNL Gene Symbol=SSIIB;CGSNL Gene Name=SOLUBLE STARCH SYNTHASE IIB;Oryzabase Gene Symbol Synonym(s)=OsSSIIb%2C OsSSII-2%2C SSII-2%2C SS2%2C OsSSSIIb%2C SS2b;Oryzabase Gene Name Synonym(s)=Starch synthase-IIb%2C starch synthase IIb%2C "Soluble starch synthase 2-2%2C chloroplastic/amyloplastic"%2C Soluble starch synthase II-2%2C Starch synthase isoform zSTSII-2;Note=Similar to Soluble starch synthase 2-2%2C chloroplastic/amyloplastic.;Transcript_evidence=AK061803 (DDBJ%2C Best hit);ORF_evidence=D0TZP8 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Biological Process: glucan biosynthetic process (GO:0009250),Molecular Function: starch synthase activity (GO:0009011);InterPro=Glycosyl transferase%2C family 1 (IPR001296),Glycogen/starch synthases%2C ADP-glucose type (IPR011835),Starch synthase%2C catalytic domain (IPR013534);NIAS_FLcDNA=001-039-H12;Oryzabase=8103;Expression=AK061803;TENOR=Os02t0744700-02;KEGG=Os02t0744700-02 (EC:2.4.1.183)
Chr02	irgsp1_rep	five_prime_UTR	31236036	31236036	.	-	.	Parent=Os02t0744700-02
Chr02	irgsp1_rep	CDS	31235970	31236035	.	-	0	Parent=Os02t0744700-02
Chr02	irgsp1_rep	CDS	31235827	31235871	.	-	0	Parent=Os02t0744700-02
Chr02	irgsp1_rep	CDS	31235174	31235347	.	-	0	Parent=Os02t0744700-02
Chr02	irgsp1_rep	CDS	31233717	31234673	.	-	0	Parent=Os02t0744700-02
Chr02	irgsp1_rep	three_prime_UTR	31233351	31233716	.	-	.	Parent=Os02t0744700-02
Chr02	irgsp1_rep	mRNA	31233390	31234486	.	+	.	ID=Os02t0744800-01;Name=Os02t0744800-01;Locus_id=Os02g0744800;Note=Hypothetical protein.;Transcript_evidence=AK110575 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-168-E03;TENOR=Os02t0744800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	31233390	31233993	.	+	.	Parent=Os02t0744800-01
Chr02	irgsp1_rep	CDS	31233994	31234365	.	+	0	Parent=Os02t0744800-01
Chr02	irgsp1_rep	three_prime_UTR	31234366	31234486	.	+	.	Parent=Os02t0744800-01
Chr02	irgsp1_rep	mRNA	31246069	31247641	.	-	.	ID=Os02t0744851-00;Name=Os02t0744851-00;Locus_id=Os02g0744851;Note=Hypothetical gene.;Transcript_evidence=EU976777 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0744851-00;KEGG=Os02t0744851-00
Chr02	irgsp1_rep	five_prime_UTR	31247458	31247641	.	-	.	Parent=Os02t0744851-00
Chr02	irgsp1_rep	five_prime_UTR	31246721	31246803	.	-	.	Parent=Os02t0744851-00
Chr02	irgsp1_rep	CDS	31246229	31246720	.	-	0	Parent=Os02t0744851-00
Chr02	irgsp1_rep	three_prime_UTR	31246069	31246228	.	-	.	Parent=Os02t0744851-00
Chr02	irgsp1_rep	mRNA	31246225	31248801	.	+	.	ID=Os02t0744900-01;Name=Os02t0744900-01;Locus_id=Os02g0744900;RAP-DB Gene Symbol Synonym(s)=LYL1%2C OsChl P%2C OsGGRI%2C OsGGR1;RAP-DB Gene Name Synonym(s)=Light-Induced Yellow Leaf 1;CGSNL Gene Symbol=LYL1;CGSNL Gene Name=LIGHT-INDUCED YELLOW LEAF 1;Oryzabase Gene Symbol Synonym(s)=OsChl P%2C CHL P%2C ChlP%2C OsGGRI%2C GGRI%2C OsGGR%2C GGR%2C OsGGR1%2C GGR1%2C OsGGR1/LYL1/OsChl P;Oryzabase Gene Name Synonym(s)=Geranylgeranyl reductase%2C Light-Induced Yellow Leaf 1%2C Geranylgeranyl Reductase I%2C Geranylgeranyl-diphosphate reductase%2C geranylgeranyl reductase 1;Note=Geranylgeranyl reductase (EC:1.3.1.83)%2C Chlorophyll and &alpha%3B-tocopherol synthesis%2C Response to light stress%2C Protection of photooxidative damage;Transcript_evidence=AK061968,AK098873;ORF_evidence=Q6Z2T6;GO=Biological Process: photosynthesis (GO:0015979),Biological Process: chlorophyll biosynthetic process (GO:0015995),Biological Process: cofactor biosynthetic process (GO:0051188),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on the CH-CH group of donors%2C NAD or NADP as acceptor (GO:0016628),Molecular Function: geranylgeranyl reductase activity (GO:0045550),Molecular Function: FAD binding (GO:0071949);InterPro=FAD/NAD(P)-binding domain superfamily (IPR036188),Geranylgeranyl reductase family (IPR011777),Geranylgeranyl reductase%2C plant/prokaryotic (IPR010253),Geranylgeranyl reductase%2C plant/cyanobacteria (IPR011774),FAD-binding domain (IPR002938);NIAS_FLcDNA=001-042-H01,J013001C18;Manual Curation=March 1%2C 2018;Literature_PMID=29382838,24058671;Oryzabase=18102;TENOR=Os02t0744900-01
Chr02	irgsp1_rep	five_prime_UTR	31246225	31246304	.	+	.	Parent=Os02t0744900-01
Chr02	irgsp1_rep	CDS	31246305	31246804	.	+	0	Parent=Os02t0744900-01
Chr02	irgsp1_rep	CDS	31247469	31247924	.	+	1	Parent=Os02t0744900-01
Chr02	irgsp1_rep	CDS	31248010	31248445	.	+	1	Parent=Os02t0744900-01
Chr02	irgsp1_rep	three_prime_UTR	31248446	31248801	.	+	.	Parent=Os02t0744900-01
Chr02	irgsp1_rep	mRNA	31252649	31255481	.	-	.	ID=Os02t0745000-01;Name=Os02t0745000-01;Locus_id=Os02g0745000;Oryzabase Gene Symbol Synonym(s)=Get3;Oryzabase Gene Name Synonym(s)=Get3 orthologue%2C Guided Entry of Tail-anchored protein 3 ortholog;Note=ATPase%2C anion-transporting domain containing protein.;Transcript_evidence=AK099676 (DDBJ%2C Best hit);ORF_evidence=NP_001151344.1 (RefSeq);GO=Biological Process: detoxification of arsenic-containing substance (GO:0071722),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887);InterPro=Arsenical pump ATPase%2C ArsA/Get3 (IPR016300);NIAS_FLcDNA=J013070D05;Oryzabase=22427;Expression=AK099676;TENOR=Os02t0745000-01;KEGG=Os02t0745000-01 (EC:3.6.3.16)
Chr02	irgsp1_rep	five_prime_UTR	31255481	31255481	.	-	.	Parent=Os02t0745000-01
Chr02	irgsp1_rep	CDS	31255454	31255480	.	-	0	Parent=Os02t0745000-01
Chr02	irgsp1_rep	CDS	31255025	31255135	.	-	0	Parent=Os02t0745000-01
Chr02	irgsp1_rep	CDS	31254810	31254884	.	-	0	Parent=Os02t0745000-01
Chr02	irgsp1_rep	CDS	31254661	31254729	.	-	0	Parent=Os02t0745000-01
Chr02	irgsp1_rep	CDS	31254510	31254575	.	-	0	Parent=Os02t0745000-01
Chr02	irgsp1_rep	CDS	31253717	31253791	.	-	0	Parent=Os02t0745000-01
Chr02	irgsp1_rep	CDS	31253533	31253631	.	-	0	Parent=Os02t0745000-01
Chr02	irgsp1_rep	CDS	31253306	31253440	.	-	0	Parent=Os02t0745000-01
Chr02	irgsp1_rep	CDS	31253073	31253210	.	-	0	Parent=Os02t0745000-01
Chr02	irgsp1_rep	three_prime_UTR	31252649	31253072	.	-	.	Parent=Os02t0745000-01
Chr02	irgsp1_rep	mRNA	31266328	31269935	.	+	.	ID=Os02t0745100-01;Name=Os02t0745100-01;Locus_id=Os02g0745100;RAP-DB Gene Symbol Synonym(s)=LSI1%2C lsi1%2C NIP2-1%2C OsNIP2%3B1%2C NIP2%3B1%2C OsLsi1;RAP-DB Gene Name Synonym(s)=LOW SILICON RICE 1%2C low silicon rice%2C Low silicon rice 1%2C Silicon transporter LSI1%2C Aquaporin NIP2-1%2C NOD26-like intrinsic protein 2-1%2C Silicon transporter LSI1%2C Low silicon protein 1%2C NOD26 LIKE INTRINSIC PROTEIN 2%3B1;CGSNL Gene Symbol=LSI1;CGSNL Gene Name=LOW SILICON RICE 1;Oryzabase Gene Symbol Synonym(s)=lsi1%2C NIP2-1%2C OsNIP2%3B1%2C NIP2%3B1%2C OsLsi1%2C lsi(t)%2C OsNIP2.1/OsLsi1/OsSIIT1%2C OsNIP2.1%2C NIP2.1;Oryzabase Gene Name Synonym(s)=low silicon rice%2C Low silicon rice 1%2C Silicon transporter LSI1%2C Aquaporin NIP2-1%2C NOD26-like intrinsic protein 2-1%2C Silicon transporter LSI1%2C Low silicon protein 1%2C NOD26 LIKE INTRINSIC PROTEIN 2%3B1%2C low Si uptake%2C Low Si 1;Note=Aquaporin NIP III subfamily protein%2C Aquaporin%2C Silicon influx transporter%2C Arsenic species (As) uptake%2C Arsenite efflux%2C Selenite (Se) uptake%2C Water transport;Transcript_evidence=AB222272 (Genbank),AK069842 (Genbank);ORF_evidence=Q6Z2T3 (UniProt),B7EGY5 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Major intrinsic protein%2C conserved site (IPR022357),Aquaporin-like (IPR023271);NIAS_FLcDNA=J023031E16;Manual Curation=September 15%2C 2009;Literature_PMID=16572174,20163552,20498338,18626020,19542298,16033806;Oryzabase=6063;Expression=AK069842;TENOR=Os02t0745100-01;KEGG=Os02t0745100-01
Chr02	irgsp1_rep	five_prime_UTR	31266328	31266442	.	+	.	Parent=Os02t0745100-01
Chr02	irgsp1_rep	CDS	31266443	31266592	.	+	0	Parent=Os02t0745100-01
Chr02	irgsp1_rep	CDS	31266735	31266959	.	+	0	Parent=Os02t0745100-01
Chr02	irgsp1_rep	CDS	31268565	31268759	.	+	0	Parent=Os02t0745100-01
Chr02	irgsp1_rep	CDS	31268864	31268925	.	+	0	Parent=Os02t0745100-01
Chr02	irgsp1_rep	CDS	31269275	31269539	.	+	1	Parent=Os02t0745100-01
Chr02	irgsp1_rep	three_prime_UTR	31269540	31269935	.	+	.	Parent=Os02t0745100-01
Chr02	irgsp1_rep	mRNA	31273220	31284049	.	-	.	ID=Os02t0745200-01;Name=Os02t0745200-01;Locus_id=Os02g0745200;Note=Hypothetical gene.;Transcript_evidence=AK065532 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013032G24;Expression=AK065532;TENOR=Os02t0745200-01;KEGG=Os02t0745200-01
Chr02	irgsp1_rep	five_prime_UTR	31283549	31284049	.	-	.	Parent=Os02t0745200-01
Chr02	irgsp1_rep	five_prime_UTR	31283353	31283435	.	-	.	Parent=Os02t0745200-01
Chr02	irgsp1_rep	five_prime_UTR	31281935	31282196	.	-	.	Parent=Os02t0745200-01
Chr02	irgsp1_rep	five_prime_UTR	31281016	31281191	.	-	.	Parent=Os02t0745200-01
Chr02	irgsp1_rep	five_prime_UTR	31280164	31280475	.	-	.	Parent=Os02t0745200-01
Chr02	irgsp1_rep	five_prime_UTR	31279328	31279467	.	-	.	Parent=Os02t0745200-01
Chr02	irgsp1_rep	five_prime_UTR	31278912	31279110	.	-	.	Parent=Os02t0745200-01
Chr02	irgsp1_rep	five_prime_UTR	31278221	31278313	.	-	.	Parent=Os02t0745200-01
Chr02	irgsp1_rep	five_prime_UTR	31276610	31276736	.	-	.	Parent=Os02t0745200-01
Chr02	irgsp1_rep	five_prime_UTR	31273667	31274011	.	-	.	Parent=Os02t0745200-01
Chr02	irgsp1_rep	CDS	31273451	31273666	.	-	0	Parent=Os02t0745200-01
Chr02	irgsp1_rep	three_prime_UTR	31273220	31273450	.	-	.	Parent=Os02t0745200-01
Chr02	irgsp1_rep	mRNA	31281912	31284030	.	-	.	ID=Os02t0745200-02;Name=Os02t0745200-02;Locus_id=Os02g0745200;Note=Hypothetical gene.;Transcript_evidence=AK102109 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033084E07;Expression=AK102109;TENOR=Os02t0745200-02;KEGG=Os02t0745200-02
Chr02	irgsp1_rep	five_prime_UTR	31283549	31284030	.	-	.	Parent=Os02t0745200-02
Chr02	irgsp1_rep	five_prime_UTR	31283425	31283435	.	-	.	Parent=Os02t0745200-02
Chr02	irgsp1_rep	CDS	31283353	31283424	.	-	0	Parent=Os02t0745200-02
Chr02	irgsp1_rep	CDS	31282898	31283059	.	-	0	Parent=Os02t0745200-02
Chr02	irgsp1_rep	three_prime_UTR	31281912	31282897	.	-	.	Parent=Os02t0745200-02
Chr02	irgsp1_rep	mRNA	31280964	31282252	.	+	.	ID=Os02t0745250-00;Name=Os02t0745250-00;Locus_id=Os02g0745250;Note=Similar to NAC domain class transcription factor.;Transcript_evidence=AY742218 (DDBJ);ORF_evidence=D9ZJ98 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);TENOR=Os02t0745250-00
Chr02	irgsp1_rep	CDS	31280964	31281150	.	+	0	Parent=Os02t0745250-00
Chr02	irgsp1_rep	CDS	31281876	31282252	.	+	2	Parent=Os02t0745250-00
Chr02	irgsp1_rep	mRNA	31282670	31283167	.	+	.	ID=Os02t0745300-00;Name=Os02t0745300-00;Locus_id=Os02g0745300;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6ZGU0 (UniProt);TENOR=Os02t0745300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	31282670	31283167	.	+	0	Parent=Os02t0745300-00
Chr02	irgsp1_rep	mRNA	31284722	31286574	.	+	.	ID=Os02t0745400-01;Name=Os02t0745400-01;Locus_id=Os02g0745400;CGSNL Gene Symbol=GAUT11;CGSNL Gene Name=GALACTURONOSYLTRANSFERASE 11;Oryzabase Gene Symbol Synonym(s)=OsGAUT11;Oryzabase Gene Name Synonym(s)=galacturonosyltransferase 11;Note=Glycosyl transferase%2C family 8 protein.;Transcript_evidence=AK072229 (DDBJ%2C Best hit);ORF_evidence=NP_566170.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 8 (IPR002495);NIAS_FLcDNA=J013169N10;Oryzabase=23252;Expression=AK072229;TENOR=Os02t0745400-01;KEGG=Os02t0745400-01
Chr02	irgsp1_rep	five_prime_UTR	31284722	31284795	.	+	.	Parent=Os02t0745400-01
Chr02	irgsp1_rep	CDS	31284796	31285998	.	+	0	Parent=Os02t0745400-01
Chr02	irgsp1_rep	CDS	31286096	31286374	.	+	0	Parent=Os02t0745400-01
Chr02	irgsp1_rep	three_prime_UTR	31286375	31286574	.	+	.	Parent=Os02t0745400-01
Chr02	irgsp1_rep	mRNA	31284744	31286482	.	+	.	ID=Os02t0745400-02;Name=Os02t0745400-02;Locus_id=Os02g0745400;CGSNL Gene Symbol=GAUT11;CGSNL Gene Name=GALACTURONOSYLTRANSFERASE 11;Oryzabase Gene Symbol Synonym(s)=OsGAUT11;Oryzabase Gene Name Synonym(s)=galacturonosyltransferase 11;Note=Glycosyl transferase%2C family 8 protein.;Transcript_evidence=AK108072 (DDBJ%2C Best hit);ORF_evidence=NP_566170.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 8 (IPR002495);NIAS_FLcDNA=002-138-C08;Oryzabase=23252;Expression=AK108072;TENOR=Os02t0745400-02;KEGG=Os02t0745400-02
Chr02	irgsp1_rep	five_prime_UTR	31284744	31284795	.	+	.	Parent=Os02t0745400-02
Chr02	irgsp1_rep	CDS	31284796	31285998	.	+	0	Parent=Os02t0745400-02
Chr02	irgsp1_rep	CDS	31286096	31286374	.	+	0	Parent=Os02t0745400-02
Chr02	irgsp1_rep	three_prime_UTR	31286375	31286482	.	+	.	Parent=Os02t0745400-02
Chr02	irgsp1_rep	mRNA	31290670	31299077	.	+	.	ID=Os02t0745600-01;Name=Os02t0745600-01;Locus_id=Os02g0745600;Note=Kelch related domain containing protein.;Transcript_evidence=AK103517 (DDBJ%2C Best hit);ORF_evidence=A2X9K7 (UniProt);InterPro=Development/cell death domain (IPR013989);NIAS_FLcDNA=J033131H10;Expression=AK103517;TENOR=Os02t0745600-01;KEGG=Os02t0745600-01
Chr02	irgsp1_rep	five_prime_UTR	31290670	31290784	.	+	.	Parent=Os02t0745600-01
Chr02	irgsp1_rep	five_prime_UTR	31291340	31291341	.	+	.	Parent=Os02t0745600-01
Chr02	irgsp1_rep	CDS	31291342	31291941	.	+	0	Parent=Os02t0745600-01
Chr02	irgsp1_rep	CDS	31295645	31295761	.	+	0	Parent=Os02t0745600-01
Chr02	irgsp1_rep	CDS	31295871	31296313	.	+	0	Parent=Os02t0745600-01
Chr02	irgsp1_rep	CDS	31298338	31298644	.	+	1	Parent=Os02t0745600-01
Chr02	irgsp1_rep	three_prime_UTR	31298645	31299077	.	+	.	Parent=Os02t0745600-01
Chr02	irgsp1_rep	mRNA	31299633	31301828	.	+	.	ID=Os02t0745700-01;Name=Os02t0745700-01;Locus_id=Os02g0745700;Note=Fatty acid hydroxylase domain containing protein.;Transcript_evidence=AK103058 (DDBJ%2C Best hit);ORF_evidence=NP_001149772.1 (RefSeq);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Fatty acid hydroxylase (IPR006694);NIAS_FLcDNA=J033117K11;Expression=AK103058;TENOR=Os02t0745700-01;KEGG=Os02t0745700-01
Chr02	irgsp1_rep	five_prime_UTR	31299633	31299886	.	+	.	Parent=Os02t0745700-01
Chr02	irgsp1_rep	CDS	31299887	31300117	.	+	0	Parent=Os02t0745700-01
Chr02	irgsp1_rep	CDS	31300929	31301495	.	+	0	Parent=Os02t0745700-01
Chr02	irgsp1_rep	three_prime_UTR	31301496	31301828	.	+	.	Parent=Os02t0745700-01
Chr02	irgsp1_rep	mRNA	31301160	31301791	.	+	.	ID=Os02t0745700-02;Name=Os02t0745700-02;Locus_id=Os02g0745700;Note=Similar to protein SUR2.;Transcript_evidence=AK059700 (DDBJ%2C Best hit);ORF_evidence=NP_001149259.1 (RefSeq);NIAS_FLcDNA=001-032-C10;Expression=AK059700;TENOR=Os02t0745700-02;KEGG=Os02t0745700-02 (EC:1.14.-.-)
Chr02	irgsp1_rep	CDS	31301160	31301495	.	+	0	Parent=Os02t0745700-02
Chr02	irgsp1_rep	three_prime_UTR	31301496	31301791	.	+	.	Parent=Os02t0745700-02
Chr02	irgsp1_rep	mRNA	31306334	31307778	.	+	.	ID=Os02t0745800-01;Name=Os02t0745800-01;Locus_id=Os02g0745800;Note=Similar to EMB2756.;Transcript_evidence=AK059598 (DDBJ%2C Best hit);ORF_evidence=B6SVM5 (UniProt);InterPro=Protein of unknown function DUF616 (IPR006852);NIAS_FLcDNA=001-030-E03;TENOR=Os02t0745800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	31306334	31306334	.	+	.	Parent=Os02t0745800-01
Chr02	irgsp1_rep	CDS	31306335	31306550	.	+	0	Parent=Os02t0745800-01
Chr02	irgsp1_rep	three_prime_UTR	31306551	31306787	.	+	.	Parent=Os02t0745800-01
Chr02	irgsp1_rep	three_prime_UTR	31306997	31307778	.	+	.	Parent=Os02t0745800-01
Chr02	irgsp1_rep	mRNA	31309754	31312787	.	-	.	ID=Os02t0746000-01;Name=Os02t0746000-01;Locus_id=Os02g0746000;RAP-DB Gene Symbol Synonym(s)=CUL3A%2C OsCUL3a;RAP-DB Gene Name Synonym(s)=CULLIN 3A%2C Cullin3a;CGSNL Gene Symbol=CUL3A;CGSNL Gene Name=CULLIN 3A;Oryzabase Gene Symbol Synonym(s)=OsCUL3a%2C CUL3a;Oryzabase Gene Name Synonym(s)=Cullin3a%2C Cullin 3a;Note=Cullin3a protein%2C Regulation of cell death and immunity;Transcript_evidence=AK072402;ORF_evidence=Q6YWY5;GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Molecular Function: ubiquitin protein ligase binding (GO:0031625);InterPro=Cullin repeat-like-containing domain (IPR016159),Cullin%2C N-terminal (IPR001373),Cullin homology (IPR016158),Winged helix-turn-helix DNA-binding domain (IPR011991),Cullin protein%2C neddylation domain (IPR019559);NIAS_FLcDNA=J023079J03;Manual Curation=April 7%2C 2017;Literature_PMID=28100706;Oryzabase=21604;TENOR=Os02t0746000-01;KEGG=Os02t0746000-01
Chr02	irgsp1_rep	five_prime_UTR	31312692	31312787	.	-	.	Parent=Os02t0746000-01
Chr02	irgsp1_rep	CDS	31312522	31312691	.	-	0	Parent=Os02t0746000-01
Chr02	irgsp1_rep	CDS	31309980	31312020	.	-	1	Parent=Os02t0746000-01
Chr02	irgsp1_rep	three_prime_UTR	31309754	31309979	.	-	.	Parent=Os02t0746000-01
Chr02	irgsp1_rep	mRNA	31396772	31399000	.	+	.	ID=Os02t0747400-01;Name=Os02t0747400-01;Locus_id=Os02g0747400;Oryzabase Gene Symbol Synonym(s)=OsTCP9%2C TCP9;Oryzabase Gene Name Synonym(s)=TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 9;Note=Similar to PCF1.;Transcript_evidence=AK068818 (DDBJ%2C Best hit);ORF_evidence=A3ABC3 (UniProt);InterPro=Transcription factor%2C TCP (IPR005333),Transcription factor TCP subgroup (IPR017887);NIAS_FLcDNA=J013163F23;Oryzabase=12395;Expression=AK068818;TENOR=Os02t0747400-01;KEGG=Os02t0747400-01
Chr02	irgsp1_rep	five_prime_UTR	31396772	31397362	.	+	.	Parent=Os02t0747400-01
Chr02	irgsp1_rep	CDS	31397363	31398595	.	+	0	Parent=Os02t0747400-01
Chr02	irgsp1_rep	three_prime_UTR	31398596	31399000	.	+	.	Parent=Os02t0747400-01
Chr02	irgsp1_rep	mRNA	31407197	31409585	.	+	.	ID=Os02t0747500-01;Name=Os02t0747500-01;Locus_id=Os02g0747500;Note=Similar to HVA22-like protein e (AtHVA22e).;Transcript_evidence=AK108482 (DDBJ%2C Best hit);ORF_evidence=NP_001150135.1 (RefSeq);InterPro=TB2/DP1/HVA22-related protein (IPR004345);NIAS_FLcDNA=002-143-F05;Expression=AK108482;TENOR=Os02t0747500-01;KEGG=Os02t0747500-01
Chr02	irgsp1_rep	five_prime_UTR	31407197	31407333	.	+	.	Parent=Os02t0747500-01
Chr02	irgsp1_rep	CDS	31407334	31407395	.	+	0	Parent=Os02t0747500-01
Chr02	irgsp1_rep	CDS	31408240	31408266	.	+	1	Parent=Os02t0747500-01
Chr02	irgsp1_rep	CDS	31408347	31408469	.	+	1	Parent=Os02t0747500-01
Chr02	irgsp1_rep	CDS	31408759	31408999	.	+	1	Parent=Os02t0747500-01
Chr02	irgsp1_rep	CDS	31409162	31409287	.	+	0	Parent=Os02t0747500-01
Chr02	irgsp1_rep	three_prime_UTR	31409288	31409294	.	+	.	Parent=Os02t0747500-01
Chr02	irgsp1_rep	three_prime_UTR	31409378	31409585	.	+	.	Parent=Os02t0747500-01
Chr02	irgsp1_rep	mRNA	31409912	31413535	.	-	.	ID=Os02t0747600-01;Name=Os02t0747600-01;Locus_id=Os02g0747600;CGSNL Gene Symbol=AP2/EREBP22;CGSNL Gene Name=APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 22;Oryzabase Gene Symbol Synonym(s)=AP2/EREBP#022;Oryzabase Gene Name Synonym(s)=APETALA2/ethylene-responsive element binding protein 22;Note=Similar to Transcription factor AP2D8.;Transcript_evidence=AK242387 (DDBJ%2C Best hit);ORF_evidence=Q2TQ37 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J080051E14;Oryzabase=10648;TENOR=Os02t0747600-01;KEGG=Os02t0747600-01
Chr02	irgsp1_rep	five_prime_UTR	31413535	31413535	.	-	.	Parent=Os02t0747600-01
Chr02	irgsp1_rep	CDS	31413059	31413534	.	-	0	Parent=Os02t0747600-01
Chr02	irgsp1_rep	CDS	31412824	31412906	.	-	1	Parent=Os02t0747600-01
Chr02	irgsp1_rep	CDS	31411205	31411213	.	-	2	Parent=Os02t0747600-01
Chr02	irgsp1_rep	CDS	31411029	31411117	.	-	2	Parent=Os02t0747600-01
Chr02	irgsp1_rep	CDS	31410886	31410959	.	-	0	Parent=Os02t0747600-01
Chr02	irgsp1_rep	CDS	31410759	31410809	.	-	1	Parent=Os02t0747600-01
Chr02	irgsp1_rep	CDS	31410586	31410662	.	-	1	Parent=Os02t0747600-01
Chr02	irgsp1_rep	CDS	31410341	31410498	.	-	2	Parent=Os02t0747600-01
Chr02	irgsp1_rep	three_prime_UTR	31409912	31410340	.	-	.	Parent=Os02t0747600-01
Chr02	irgsp1_rep	mRNA	31423943	31425239	.	-	.	ID=Os02t0747900-01;Name=Os02t0747900-01;Locus_id=Os02g0747900;RAP-DB Gene Symbol Synonym(s)=ILI5%2C OsBUL1%2C PGL2;RAP-DB Gene Name Synonym(s)=INCREASED LEAF INCLINATION 5%2C Increased Leaf Inclination 5%2C BRASSINOSTEROID UPREGULATED 1-LIKE1%2C POSITIVE REGULATOR OF GRAIN LENGTH 2;CGSNL Gene Symbol=ILI5;CGSNL Gene Name=INCREASED LEAF INCLINATION 5;Oryzabase Gene Symbol Synonym(s)=ILI5%2C OsILI5%2C PGL2%2C OsPGL2%2C Os170%2C OsBUL1%2C BUL1%2C ILI5/PGL2%2C OsbHLH170%2C bHLH170;Oryzabase Gene Name Synonym(s)=Increased Leaf Inclination 5%2C POSITIVE REGULATOR OF GRAIN LENGTH 2%2C BRASSINOSTEROID UPREGULATED 1-LIKE1%2C BRASSINOSTEROID UPREGULATED1 LIKE1%2C basic helix-loop-helix protein 170;Note=Atypical basic helix-loop-helix protein%2C Control of cell elongation%2C Regulator of grain size and leaf angle;Transcript_evidence=Inferred form literature;ORF_evidence=Q6YUX0;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);Manual Curation=January 5%2C 2017;Literature_PMID=27879391,23136524;Oryzabase=10948;TENOR=Os02t0747900-00
Chr02	irgsp1_rep	five_prime_UTR	31424980	31425239	.	-	.	Parent=Os02t0747900-01
Chr02	irgsp1_rep	CDS	31424869	31424979	.	-	0	Parent=Os02t0747900-01
Chr02	irgsp1_rep	CDS	31424487	31424642	.	-	0	Parent=Os02t0747900-01
Chr02	irgsp1_rep	three_prime_UTR	31423943	31424486	.	-	.	Parent=Os02t0747900-01
Chr02	irgsp1_rep	mRNA	31432698	31437991	.	-	.	ID=Os02t0748100-01;Name=Os02t0748100-01;Locus_id=Os02g0748100;Note=RINT-1/TIP-1 family protein.;Transcript_evidence=AK101365 (DDBJ%2C Best hit);ORF_evidence=NP_190354.1 (RefSeq);InterPro=RINT-1/TIP-1 (IPR007528);NIAS_FLcDNA=J033035K14;Expression=AK101365;TENOR=Os02t0748100-01;KEGG=Os02t0748100-01
Chr02	irgsp1_rep	five_prime_UTR	31437895	31437991	.	-	.	Parent=Os02t0748100-01
Chr02	irgsp1_rep	CDS	31437615	31437894	.	-	0	Parent=Os02t0748100-01
Chr02	irgsp1_rep	CDS	31437419	31437523	.	-	2	Parent=Os02t0748100-01
Chr02	irgsp1_rep	CDS	31434750	31434847	.	-	2	Parent=Os02t0748100-01
Chr02	irgsp1_rep	CDS	31432810	31434675	.	-	0	Parent=Os02t0748100-01
Chr02	irgsp1_rep	three_prime_UTR	31432698	31432809	.	-	.	Parent=Os02t0748100-01
Chr02	irgsp1_rep	mRNA	31437306	31437979	.	-	.	ID=Os02t0748100-02;Name=Os02t0748100-02;Locus_id=Os02g0748100;Note=Hypothetical conserved gene.;Transcript_evidence=AK111248 (DDBJ%2C Best hit);ORF_evidence=Q6YUW6 (UniProt);NIAS_FLcDNA=002-180-D09;Expression=AK111248;TENOR=Os02t0748100-02;KEGG=Os02t0748100-02
Chr02	irgsp1_rep	five_prime_UTR	31437895	31437979	.	-	.	Parent=Os02t0748100-02
Chr02	irgsp1_rep	CDS	31437615	31437894	.	-	0	Parent=Os02t0748100-02
Chr02	irgsp1_rep	CDS	31437363	31437523	.	-	2	Parent=Os02t0748100-02
Chr02	irgsp1_rep	three_prime_UTR	31437306	31437362	.	-	.	Parent=Os02t0748100-02
Chr02	irgsp1_rep	mRNA	31444678	31447719	.	-	.	ID=Os02t0748300-01;Name=Os02t0748300-01;Locus_id=Os02g0748300;Oryzabase Gene Symbol Synonym(s)=OsFbox109%2C Os_F0628;Oryzabase Gene Name Synonym(s)=F-box protein 109;Note=Similar to VMP3 protein.;Transcript_evidence=AK066613 (DDBJ%2C Best hit);ORF_evidence=NP_001148653.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Kelch repeat type 1 (IPR006652),Galactose oxidase%2C beta-propeller (IPR015916);NIAS_FLcDNA=J013073O20;Oryzabase=16900;Expression=AK066613;TENOR=Os02t0748300-01;KEGG=Os02t0748300-01
Chr02	irgsp1_rep	five_prime_UTR	31447411	31447719	.	-	.	Parent=Os02t0748300-01
Chr02	irgsp1_rep	five_prime_UTR	31446347	31446426	.	-	.	Parent=Os02t0748300-01
Chr02	irgsp1_rep	CDS	31445066	31446346	.	-	0	Parent=Os02t0748300-01
Chr02	irgsp1_rep	three_prime_UTR	31444678	31445065	.	-	.	Parent=Os02t0748300-01
Chr02	irgsp1_rep	mRNA	31445019	31445808	.	-	.	ID=Os02t0748300-02;Name=Os02t0748300-02;Locus_id=Os02g0748300;Oryzabase Gene Symbol Synonym(s)=OsFbox109%2C Os_F0628;Oryzabase Gene Name Synonym(s)=F-box protein 109;Note=Similar to Kelch motif family protein.;Transcript_evidence=AK100919 (DDBJ%2C Best hit);ORF_evidence=B6SXJ9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Kelch repeat type 1 (IPR006652),Kelch-type beta propeller (IPR015915);NIAS_FLcDNA=J023133K05;Oryzabase=16900;Expression=AK100919;TENOR=Os02t0748300-02;KEGG=Os02t0748300-02
Chr02	irgsp1_rep	five_prime_UTR	31445807	31445808	.	-	.	Parent=Os02t0748300-02
Chr02	irgsp1_rep	CDS	31445066	31445806	.	-	0	Parent=Os02t0748300-02
Chr02	irgsp1_rep	three_prime_UTR	31445019	31445065	.	-	.	Parent=Os02t0748300-02
Chr02	irgsp1_rep	mRNA	31461228	31462971	.	-	.	ID=Os02t0748800-00;Name=Os02t0748800-00;Locus_id=Os02g0748800;Oryzabase Gene Symbol Synonym(s)=OsGRL4;Oryzabase Gene Name Synonym(s)=GRX-like protein 4%2C glutaredoxin-like protein 4;Note=Thioredoxin fold domain containing protein.;Transcript_evidence=BT054183 (DDBJ);ORF_evidence=NP_001048121.2 (RefSeq);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin (IPR002109),Thioredoxin-like fold (IPR012336);Oryzabase=13594;TENOR=Os02t0748800-00;KEGG=Os02t0748800-00
Chr02	irgsp1_rep	five_prime_UTR	31462493	31462971	.	-	.	Parent=Os02t0748800-00
Chr02	irgsp1_rep	CDS	31461383	31462492	.	-	0	Parent=Os02t0748800-00
Chr02	irgsp1_rep	three_prime_UTR	31461228	31461382	.	-	.	Parent=Os02t0748800-00
Chr02	irgsp1_rep	mRNA	31467402	31471480	.	+	.	ID=Os02t0749000-01;Name=Os02t0749000-01;Locus_id=Os02g0749000;Note=Conserved hypothetical protein.;Transcript_evidence=AK121975 (DDBJ%2C Best hit);ORF_evidence=NP_001061503.1 (RefSeq);NIAS_FLcDNA=J033108I19;Expression=AK121975;TENOR=Os02t0749000-01;KEGG=Os02t0749000-01
Chr02	irgsp1_rep	five_prime_UTR	31467402	31468171	.	+	.	Parent=Os02t0749000-01
Chr02	irgsp1_rep	CDS	31468172	31468463	.	+	0	Parent=Os02t0749000-01
Chr02	irgsp1_rep	CDS	31468561	31468592	.	+	2	Parent=Os02t0749000-01
Chr02	irgsp1_rep	three_prime_UTR	31468593	31468663	.	+	.	Parent=Os02t0749000-01
Chr02	irgsp1_rep	three_prime_UTR	31468843	31468931	.	+	.	Parent=Os02t0749000-01
Chr02	irgsp1_rep	three_prime_UTR	31469073	31471480	.	+	.	Parent=Os02t0749000-01
Chr02	irgsp1_rep	mRNA	31472569	31473355	.	-	.	ID=Os02t0749100-01;Name=Os02t0749100-01;Locus_id=Os02g0749100;Note=Hypothetical gene.;Transcript_evidence=AK108296 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-141-E06;TENOR=Os02t0749100-01
Chr02	irgsp1_rep	five_prime_UTR	31472864	31473355	.	-	.	Parent=Os02t0749100-01
Chr02	irgsp1_rep	CDS	31472569	31472863	.	-	0	Parent=Os02t0749100-01
Chr02	irgsp1_rep	mRNA	31479932	31482928	.	+	.	ID=Os02t0749150-01;Name=Os02t0749150-01;Locus_id=Os02g0749150;Note=Similar to ATPase.;Transcript_evidence=AK242209 (DDBJ%2C Best hit);ORF_evidence=NP_175433.2 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);NIAS_FLcDNA=J075170J12;TENOR=Os02t0749150-01;KEGG=Os02t0749150-01
Chr02	irgsp1_rep	five_prime_UTR	31479932	31480447	.	+	.	Parent=Os02t0749150-01
Chr02	irgsp1_rep	CDS	31480448	31480600	.	+	0	Parent=Os02t0749150-01
Chr02	irgsp1_rep	CDS	31481650	31481733	.	+	0	Parent=Os02t0749150-01
Chr02	irgsp1_rep	CDS	31481825	31482009	.	+	0	Parent=Os02t0749150-01
Chr02	irgsp1_rep	CDS	31482099	31482237	.	+	1	Parent=Os02t0749150-01
Chr02	irgsp1_rep	CDS	31482348	31482407	.	+	0	Parent=Os02t0749150-01
Chr02	irgsp1_rep	CDS	31482476	31482547	.	+	0	Parent=Os02t0749150-01
Chr02	irgsp1_rep	CDS	31482643	31482756	.	+	0	Parent=Os02t0749150-01
Chr02	irgsp1_rep	three_prime_UTR	31482757	31482928	.	+	.	Parent=Os02t0749150-01
Chr02	irgsp1_rep	mRNA	31483918	31484499	.	-	.	ID=Os02t0749200-01;Name=Os02t0749200-01;Locus_id=Os02g0749200;Note=Hypothetical protein.;Transcript_evidence=AK107742 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-132-G10;TENOR=Os02t0749200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	31484341	31484499	.	-	.	Parent=Os02t0749200-01
Chr02	irgsp1_rep	CDS	31483918	31484340	.	-	0	Parent=Os02t0749200-01
Chr02	irgsp1_rep	mRNA	31484405	31484755	.	+	.	ID=Os02t0749250-00;Name=Os02t0749250-00;Locus_id=Os02g0749250;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os02t0749250-00;KEGG=Os02t0749250-00
Chr02	irgsp1_rep	CDS	31484405	31484755	.	+	0	Parent=Os02t0749250-00
Chr02	irgsp1_rep	mRNA	31491698	31494349	.	+	.	ID=Os02t0749300-01;Name=Os02t0749300-01;Locus_id=Os02g0749300;Oryzabase Gene Symbol Synonym(s)=OsSK1;Oryzabase Gene Name Synonym(s)=Shikimate kinase 1%2C Shikimate kinase;Note=Similar to Shikimate kinase%2C chloroplast precursor (EC 2.7.1.71).;Transcript_evidence=AK066687 (DDBJ%2C Best hit);ORF_evidence=Q5NTH4 (UniProt);GO=Molecular Function: shikimate kinase activity (GO:0004765),Molecular Function: ATP binding (GO:0005524);InterPro=Shikimate kinase (IPR000623),Shikimate kinase%2C conserved site (IPR023000);NIAS_FLcDNA=J013074E04;Oryzabase=11363;Expression=AK066687;TENOR=Os02t0749300-01;KEGG=Os02t0749300-01 (EC:2.7.1.71)
Chr02	irgsp1_rep	five_prime_UTR	31491698	31491775	.	+	.	Parent=Os02t0749300-01
Chr02	irgsp1_rep	CDS	31491776	31491980	.	+	0	Parent=Os02t0749300-01
Chr02	irgsp1_rep	CDS	31492496	31492542	.	+	2	Parent=Os02t0749300-01
Chr02	irgsp1_rep	CDS	31492630	31492684	.	+	0	Parent=Os02t0749300-01
Chr02	irgsp1_rep	CDS	31492789	31492861	.	+	2	Parent=Os02t0749300-01
Chr02	irgsp1_rep	CDS	31492948	31493035	.	+	1	Parent=Os02t0749300-01
Chr02	irgsp1_rep	CDS	31493165	31493247	.	+	0	Parent=Os02t0749300-01
Chr02	irgsp1_rep	CDS	31493348	31493365	.	+	1	Parent=Os02t0749300-01
Chr02	irgsp1_rep	CDS	31493389	31493407	.	+	1	Parent=Os02t0749300-01
Chr02	irgsp1_rep	three_prime_UTR	31493408	31493768	.	+	.	Parent=Os02t0749300-01
Chr02	irgsp1_rep	three_prime_UTR	31493916	31493980	.	+	.	Parent=Os02t0749300-01
Chr02	irgsp1_rep	three_prime_UTR	31494088	31494349	.	+	.	Parent=Os02t0749300-01
Chr02	irgsp1_rep	mRNA	31495289	31495755	.	-	.	ID=Os02t0749400-01;Name=Os02t0749400-01;Locus_id=Os02g0749400;Note=Hypothetical protein.;Transcript_evidence=AK058832 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-004-B05;TENOR=Os02t0749400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	31495411	31495755	.	-	0	Parent=Os02t0749400-01
Chr02	irgsp1_rep	three_prime_UTR	31495289	31495410	.	-	.	Parent=Os02t0749400-01
Chr02	irgsp1_rep	mRNA	31497036	31498714	.	-	.	ID=Os02t0749450-01;Name=Os02t0749450-01;Locus_id=Os02g0749450;Note=Similar to dolichol-phosphate mannosyltransferase-related.;Transcript_evidence=AK241808 (DDBJ%2C Best hit);ORF_evidence=NP_564521.1 (RefSeq);InterPro=Dolichol-phosphate mannosyltransferase subunit 3 (IPR013174);NIAS_FLcDNA=J065210E11;TENOR=Os02t0749450-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	31498586	31498714	.	-	.	Parent=Os02t0749450-01
Chr02	irgsp1_rep	five_prime_UTR	31498184	31498202	.	-	.	Parent=Os02t0749450-01
Chr02	irgsp1_rep	CDS	31498082	31498183	.	-	0	Parent=Os02t0749450-01
Chr02	irgsp1_rep	CDS	31497879	31497986	.	-	0	Parent=Os02t0749450-01
Chr02	irgsp1_rep	CDS	31497446	31497505	.	-	0	Parent=Os02t0749450-01
Chr02	irgsp1_rep	three_prime_UTR	31497036	31497445	.	-	.	Parent=Os02t0749450-01
Chr02	irgsp1_rep	mRNA	31501032	31512420	.	-	.	ID=Os02t0749500-01;Name=Os02t0749500-01;Locus_id=Os02g0749500;Note=Similar to SEC6.;Transcript_evidence=AK119455 (DDBJ%2C Best hit);ORF_evidence=NP_565026.1 (RefSeq);InterPro=Exocyst complex component Sec6 (IPR010326);NIAS_FLcDNA=001-133-E02;TENOR=Os02t0749500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	31512241	31512420	.	-	.	Parent=Os02t0749500-01
Chr02	irgsp1_rep	CDS	31512118	31512240	.	-	0	Parent=Os02t0749500-01
Chr02	irgsp1_rep	CDS	31510044	31510301	.	-	0	Parent=Os02t0749500-01
Chr02	irgsp1_rep	three_prime_UTR	31510010	31510043	.	-	.	Parent=Os02t0749500-01
Chr02	irgsp1_rep	three_prime_UTR	31509793	31509883	.	-	.	Parent=Os02t0749500-01
Chr02	irgsp1_rep	three_prime_UTR	31509558	31509647	.	-	.	Parent=Os02t0749500-01
Chr02	irgsp1_rep	three_prime_UTR	31509344	31509423	.	-	.	Parent=Os02t0749500-01
Chr02	irgsp1_rep	three_prime_UTR	31508832	31508924	.	-	.	Parent=Os02t0749500-01
Chr02	irgsp1_rep	three_prime_UTR	31508645	31508671	.	-	.	Parent=Os02t0749500-01
Chr02	irgsp1_rep	three_prime_UTR	31508217	31508324	.	-	.	Parent=Os02t0749500-01
Chr02	irgsp1_rep	three_prime_UTR	31507528	31507666	.	-	.	Parent=Os02t0749500-01
Chr02	irgsp1_rep	three_prime_UTR	31507384	31507431	.	-	.	Parent=Os02t0749500-01
Chr02	irgsp1_rep	three_prime_UTR	31506918	31506973	.	-	.	Parent=Os02t0749500-01
Chr02	irgsp1_rep	three_prime_UTR	31506380	31506488	.	-	.	Parent=Os02t0749500-01
Chr02	irgsp1_rep	three_prime_UTR	31506069	31506209	.	-	.	Parent=Os02t0749500-01
Chr02	irgsp1_rep	three_prime_UTR	31505811	31505990	.	-	.	Parent=Os02t0749500-01
Chr02	irgsp1_rep	three_prime_UTR	31505608	31505691	.	-	.	Parent=Os02t0749500-01
Chr02	irgsp1_rep	three_prime_UTR	31505434	31505520	.	-	.	Parent=Os02t0749500-01
Chr02	irgsp1_rep	three_prime_UTR	31504738	31504782	.	-	.	Parent=Os02t0749500-01
Chr02	irgsp1_rep	three_prime_UTR	31503452	31503530	.	-	.	Parent=Os02t0749500-01
Chr02	irgsp1_rep	three_prime_UTR	31502969	31503038	.	-	.	Parent=Os02t0749500-01
Chr02	irgsp1_rep	three_prime_UTR	31502404	31502491	.	-	.	Parent=Os02t0749500-01
Chr02	irgsp1_rep	three_prime_UTR	31502060	31502149	.	-	.	Parent=Os02t0749500-01
Chr02	irgsp1_rep	three_prime_UTR	31501743	31501859	.	-	.	Parent=Os02t0749500-01
Chr02	irgsp1_rep	three_prime_UTR	31501580	31501642	.	-	.	Parent=Os02t0749500-01
Chr02	irgsp1_rep	three_prime_UTR	31501032	31501403	.	-	.	Parent=Os02t0749500-01
Chr02	irgsp1_rep	mRNA	31515301	31517784	.	-	.	ID=Os02t0749700-01;Name=Os02t0749700-01;Locus_id=Os02g0749700;RAP-DB Gene Symbol Synonym(s)=OsLAC10;RAP-DB Gene Name Synonym(s)=laccase 10;CGSNL Gene Symbol=LAC10;CGSNL Gene Name=LACCASE 10;Oryzabase Gene Symbol Synonym(s)=OsLAC10;Oryzabase Gene Name Synonym(s)=laccase 10;Note=Laccase%2C Lignin biosynthesis%2C Response to Cu stress of rice roots;Transcript_evidence=Inferred from literature;ORF_evidence=Q6Z8L2;GO=Biological Process: lignin catabolic process (GO:0046274),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: copper ion binding (GO:0005507),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: hydroquinone:oxygen oxidoreductase activity (GO:0052716),Cellular Component: apoplast (GO:0048046);InterPro=Cupredoxin (IPR008972),Laccase (IPR017761),Multicopper oxidase%2C type 3 (IPR011707),Laccase%2C first cupredoxin domain (IPR034288),Multicopper oxidase%2C type 1 (IPR001117),Laccase%2C second cupredoxin domain (IPR034285),Multicopper oxidase%2C type 2 (IPR011706),Laccase%2C third cupredoxin domain (IPR034289),Multicopper oxidases%2C conserved site (IPR033138),Multicopper oxidase%2C copper-binding site (IPR002355);Manual Curation=December 4%2C 2017;Literature_PMID=28146098;Oryzabase=18571;TENOR=Os02t0749700-00;KEGG=Os02t0749700-00
Chr02	irgsp1_rep	five_prime_UTR	31517666	31517784	.	-	.	Parent=Os02t0749700-01
Chr02	irgsp1_rep	CDS	31517558	31517665	.	-	0	Parent=Os02t0749700-01
Chr02	irgsp1_rep	CDS	31517296	31517447	.	-	0	Parent=Os02t0749700-01
Chr02	irgsp1_rep	CDS	31516955	31517199	.	-	1	Parent=Os02t0749700-01
Chr02	irgsp1_rep	CDS	31515742	31516845	.	-	2	Parent=Os02t0749700-01
Chr02	irgsp1_rep	CDS	31515518	31515648	.	-	2	Parent=Os02t0749700-01
Chr02	irgsp1_rep	three_prime_UTR	31515301	31515517	.	-	.	Parent=Os02t0749700-01
Chr02	irgsp1_rep	mRNA	31521135	31522581	.	+	.	ID=Os02t0749800-01;Name=Os02t0749800-01;Locus_id=Os02g0749800;Note=Mitochodrial transcription termination factor-related family protein.;Transcript_evidence=AK065868 (DDBJ%2C Best hit);ORF_evidence=Q6Z8L0 (UniProt);InterPro=Mitochodrial transcription termination factor-related (IPR003690);NIAS_FLcDNA=J013043F09;Expression=AK065868;TENOR=Os02t0749800-01;KEGG=Os02t0749800-01
Chr02	irgsp1_rep	five_prime_UTR	31521135	31521166	.	+	.	Parent=Os02t0749800-01
Chr02	irgsp1_rep	CDS	31521167	31522366	.	+	0	Parent=Os02t0749800-01
Chr02	irgsp1_rep	three_prime_UTR	31522367	31522581	.	+	.	Parent=Os02t0749800-01
Chr02	irgsp1_rep	mRNA	31521860	31523064	.	+	.	ID=Os02t0749800-02;Name=Os02t0749800-02;Locus_id=Os02g0749800;Note=Mitochodrial transcription termination factor-related family protein.;Transcript_evidence=AK064731 (DDBJ%2C Best hit);ORF_evidence=Q6Z8L0 (UniProt);InterPro=Mitochodrial transcription termination factor-related (IPR003690);NIAS_FLcDNA=002-120-B08;Expression=AK064731;TENOR=Os02t0749800-02;KEGG=Os02t0749800-02
Chr02	irgsp1_rep	CDS	31521860	31522366	.	+	0	Parent=Os02t0749800-02
Chr02	irgsp1_rep	three_prime_UTR	31522367	31522394	.	+	.	Parent=Os02t0749800-02
Chr02	irgsp1_rep	three_prime_UTR	31522634	31523064	.	+	.	Parent=Os02t0749800-02
Chr02	irgsp1_rep	mRNA	31523418	31524806	.	+	.	ID=Os02t0749900-01;Name=Os02t0749900-01;Locus_id=Os02g0749900;Note=Mitochodrial transcription termination factor-related family protein.;Transcript_evidence=AK103427 (DDBJ%2C Best hit),AK060034 (DDBJ%2C Best hit);ORF_evidence=A2X9N0 (UniProt);InterPro=Mitochodrial transcription termination factor-related (IPR003690);NIAS_FLcDNA=J033128L17,006-303-H12;TENOR=Os02t0749900-01
Chr02	irgsp1_rep	five_prime_UTR	31523418	31523497	.	+	.	Parent=Os02t0749900-01
Chr02	irgsp1_rep	CDS	31523498	31524646	.	+	0	Parent=Os02t0749900-01
Chr02	irgsp1_rep	three_prime_UTR	31524647	31524806	.	+	.	Parent=Os02t0749900-01
Chr02	irgsp1_rep	mRNA	31527409	31527711	.	+	.	ID=Os02t0750100-00;Name=Os02t0750100-00;Locus_id=Os02g0750100;Oryzabase Gene Name Synonym(s)=F-type ATPase delta%2C ATP synthase subunit delta;Note=Similar to ATP synthase.;Transcript_evidence=ab initio prediction;ORF_evidence=A3ABE0 (UniProt);GO=Biological Process: ATP synthesis coupled proton transport (GO:0015986),Cellular Component: plasma membrane (GO:0005886),Molecular Function: hydrogen ion transporting ATP synthase activity%2C rotational mechanism (GO:0046933);InterPro=ATPase%2C F1 complex%2C OSCP/delta subunit (IPR000711),ATPase%2C F1 complex%2C OSCP/delta subunit%2C conserved site (IPR020781);Oryzabase=23755;TENOR=Os02t0750100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	31527409	31527711	.	+	0	Parent=Os02t0750100-00
Chr02	irgsp1_rep	mRNA	31527788	31528529	.	+	.	ID=Os02t0750200-01;Name=Os02t0750200-01;Locus_id=Os02g0750200;Note=Non-protein coding transcript.;Transcript_evidence=AK062994 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-109-G06;TENOR=Os02t0750200-01
Chr02	irgsp1_rep	exon	31527788	31528529	.	+	.	Parent=Os02t0750200-01
Chr02	irgsp1_rep	mRNA	31529358	31529405	.	+	.	ID=Os02t0750300-00;Name=Os02t0750300-00;Locus_id=Os02g0750300;Note=Non-protein coding transcript.;Transcript_evidence=X02683 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0750300-00
Chr02	irgsp1_rep	exon	31529358	31529405	.	+	.	Parent=Os02t0750300-00
Chr02	irgsp1_rep	mRNA	31530873	31531853	.	+	.	ID=Os02t0750400-01;Name=Os02t0750400-01;Locus_id=Os02g0750400;Oryzabase Gene Symbol Synonym(s)=PPR;Oryzabase Gene Name Synonym(s)=Pentatricopeptide repeat (PPR) protein;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK059134 (DDBJ%2C Best hit);ORF_evidence=A3ABE1 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=001-022-H04;Oryzabase=22510;TENOR=Os02t0750400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	31530873	31530874	.	+	.	Parent=Os02t0750400-01
Chr02	irgsp1_rep	CDS	31530875	31531513	.	+	0	Parent=Os02t0750400-01
Chr02	irgsp1_rep	three_prime_UTR	31531514	31531853	.	+	.	Parent=Os02t0750400-01
Chr02	irgsp1_rep	mRNA	31532128	31534872	.	-	.	ID=Os02t0750500-01;Name=Os02t0750500-01;Locus_id=Os02g0750500;Note=Methyltransferase type 11 domain containing protein.;Transcript_evidence=AK101960 (DDBJ%2C Best hit);ORF_evidence=NP_001031144.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Methyltransferase type 11 (IPR013216);NIAS_FLcDNA=J033075P05;Expression=AK101960;TENOR=Os02t0750500-01;KEGG=Os02t0750500-01
Chr02	irgsp1_rep	five_prime_UTR	31534450	31534872	.	-	.	Parent=Os02t0750500-01
Chr02	irgsp1_rep	five_prime_UTR	31534167	31534173	.	-	.	Parent=Os02t0750500-01
Chr02	irgsp1_rep	CDS	31533148	31534166	.	-	0	Parent=Os02t0750500-01
Chr02	irgsp1_rep	CDS	31532443	31532527	.	-	1	Parent=Os02t0750500-01
Chr02	irgsp1_rep	three_prime_UTR	31532128	31532442	.	-	.	Parent=Os02t0750500-01
Chr02	irgsp1_rep	mRNA	31535313	31538770	.	-	.	ID=Os02t0750600-01;Name=Os02t0750600-01;Locus_id=Os02g0750600;Note=Membrane-anchored ubiquitin-fold protein%2C HCG-1 domain containing protein.;Transcript_evidence=AK066145 (DDBJ%2C Best hit),AK104230 (DDBJ%2C Best hit),AK104356 (DDBJ%2C Best hit);ORF_evidence=Q6Z8K4 (UniProt);InterPro=Membrane-anchored ubiquitin-fold protein%2C HCG-1 (IPR017000),Ubiquitin supergroup (IPR019955);NIAS_FLcDNA=J013056J19,006-307-E02,001-034-H07;Expression=AK066145;TENOR=Os02t0750600-01;KEGG=Os02t0750600-01
Chr02	irgsp1_rep	five_prime_UTR	31538525	31538770	.	-	.	Parent=Os02t0750600-01
Chr02	irgsp1_rep	CDS	31538392	31538524	.	-	0	Parent=Os02t0750600-01
Chr02	irgsp1_rep	CDS	31536668	31536838	.	-	2	Parent=Os02t0750600-01
Chr02	irgsp1_rep	CDS	31535778	31535833	.	-	2	Parent=Os02t0750600-01
Chr02	irgsp1_rep	three_prime_UTR	31535313	31535777	.	-	.	Parent=Os02t0750600-01
Chr02	irgsp1_rep	mRNA	31538262	31539034	.	+	.	ID=Os02t0750701-00;Name=Os02t0750701-00;Locus_id=Os02g0750701;Note=Hypothetical conserved gene.;Transcript_evidence=EU941534 (DDBJ);ORF_evidence=NP_001146446.1 (RefSeq);TENOR=Os02t0750701-00;KEGG=Os02t0750701-00
Chr02	irgsp1_rep	CDS	31538262	31538801	.	+	0	Parent=Os02t0750701-00
Chr02	irgsp1_rep	three_prime_UTR	31538802	31539034	.	+	.	Parent=Os02t0750701-00
Chr02	irgsp1_rep	mRNA	31544096	31544808	.	+	.	ID=Os02t0750800-00;Name=Os02t0750800-00;Locus_id=Os02g0750800;Note=Protein of unknown function DUF3049 domain containing protein.;Transcript_evidence=AK376569 (DDBJ);ORF_evidence=Q6Z8K2 (UniProt);InterPro=Protein of unknown function DUF3049 (IPR021410);TENOR=Os02t0750800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	31544096	31544779	.	+	0	Parent=Os02t0750800-00
Chr02	irgsp1_rep	three_prime_UTR	31544780	31544808	.	+	.	Parent=Os02t0750800-00
Chr02	irgsp1_rep	mRNA	31564646	31565269	.	-	.	ID=Os02t0750950-00;Name=Os02t0750950-00;Locus_id=Os02g0750950;Note=Hypothetical gene.;Transcript_evidence=EU941250 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0750950-00;KEGG=Os02t0750950-00
Chr02	irgsp1_rep	five_prime_UTR	31565268	31565269	.	-	.	Parent=Os02t0750950-00
Chr02	irgsp1_rep	CDS	31564971	31565267	.	-	0	Parent=Os02t0750950-00
Chr02	irgsp1_rep	three_prime_UTR	31564646	31564970	.	-	.	Parent=Os02t0750950-00
Chr02	irgsp1_rep	mRNA	31564814	31570416	.	+	.	ID=Os02t0751100-01;Name=Os02t0751100-01;Locus_id=Os02g0751100;Note=Peptidase A1 domain containing protein.;Transcript_evidence=AK070999 (DDBJ%2C Best hit);ORF_evidence=B4FFQ6 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J023079A01;Expression=AK070999;TENOR=Os02t0751100-01;KEGG=Os02t0751100-01
Chr02	irgsp1_rep	five_prime_UTR	31564814	31564955	.	+	.	Parent=Os02t0751100-01
Chr02	irgsp1_rep	CDS	31564956	31565254	.	+	0	Parent=Os02t0751100-01
Chr02	irgsp1_rep	CDS	31565602	31565737	.	+	1	Parent=Os02t0751100-01
Chr02	irgsp1_rep	CDS	31567127	31567359	.	+	0	Parent=Os02t0751100-01
Chr02	irgsp1_rep	CDS	31567988	31568215	.	+	1	Parent=Os02t0751100-01
Chr02	irgsp1_rep	CDS	31568380	31568518	.	+	1	Parent=Os02t0751100-01
Chr02	irgsp1_rep	CDS	31568598	31568668	.	+	0	Parent=Os02t0751100-01
Chr02	irgsp1_rep	CDS	31568820	31568919	.	+	1	Parent=Os02t0751100-01
Chr02	irgsp1_rep	CDS	31569708	31569771	.	+	0	Parent=Os02t0751100-01
Chr02	irgsp1_rep	CDS	31569853	31569924	.	+	2	Parent=Os02t0751100-01
Chr02	irgsp1_rep	CDS	31570007	31570227	.	+	2	Parent=Os02t0751100-01
Chr02	irgsp1_rep	three_prime_UTR	31570228	31570416	.	+	.	Parent=Os02t0751100-01
Chr02	irgsp1_rep	mRNA	31570223	31571963	.	+	.	ID=Os02t0751100-02;Name=Os02t0751100-02;Locus_id=Os02g0751100;Note=Hypothetical conserved gene.;Transcript_evidence=AK120012 (DDBJ%2C Best hit);ORF_evidence=A3ABE5 (UniProt);NIAS_FLcDNA=002-186-A12;Expression=AK120012;TENOR=Os02t0751100-02;KEGG=Os02t0751100-02
Chr02	irgsp1_rep	five_prime_UTR	31570223	31571041	.	+	.	Parent=Os02t0751100-02
Chr02	irgsp1_rep	CDS	31571042	31571419	.	+	0	Parent=Os02t0751100-02
Chr02	irgsp1_rep	three_prime_UTR	31571420	31571963	.	+	.	Parent=Os02t0751100-02
Chr02	irgsp1_rep	mRNA	31575903	31577560	.	+	.	ID=Os02t0751300-01;Name=Os02t0751300-01;Locus_id=Os02g0751300;Note=Protein of unknown function DUF581 family protein.;Transcript_evidence=AK288043 (DDBJ%2C Best hit);ORF_evidence=NP_001048135.1 (RefSeq);InterPro=Protein of unknown function DUF581 (IPR007650);NIAS_FLcDNA=J075145M14;TENOR=Os02t0751300-01;KEGG=Os02t0751300-01
Chr02	irgsp1_rep	five_prime_UTR	31575903	31575926	.	+	.	Parent=Os02t0751300-01
Chr02	irgsp1_rep	CDS	31575927	31576198	.	+	0	Parent=Os02t0751300-01
Chr02	irgsp1_rep	CDS	31577084	31577255	.	+	1	Parent=Os02t0751300-01
Chr02	irgsp1_rep	three_prime_UTR	31577256	31577560	.	+	.	Parent=Os02t0751300-01
Chr02	irgsp1_rep	mRNA	31591221	31593106	.	+	.	ID=Os02t0751600-01;Name=Os02t0751600-01;Locus_id=Os02g0751600;Oryzabase Gene Symbol Synonym(s)=OsFKBP16-2;Oryzabase Gene Name Synonym(s)=FK506 binding protein 16-2;Note=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type domain containing protein.;Transcript_evidence=AK072946 (DDBJ%2C Best hit),AK061027 (DDBJ%2C Best hit);ORF_evidence=B6SRR2 (UniProt);GO=Biological Process: protein folding (GO:0006457);InterPro=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type%2C domain (IPR001179),Peptidyl-prolyl cis-trans isomerase%2C FKBP-type (IPR023566);NIAS_FLcDNA=J023150D22,006-204-F11;Oryzabase=10029;TENOR=Os02t0751600-01
Chr02	irgsp1_rep	five_prime_UTR	31591221	31591279	.	+	.	Parent=Os02t0751600-01
Chr02	irgsp1_rep	CDS	31591280	31591681	.	+	0	Parent=Os02t0751600-01
Chr02	irgsp1_rep	CDS	31591916	31592008	.	+	0	Parent=Os02t0751600-01
Chr02	irgsp1_rep	CDS	31592115	31592175	.	+	0	Parent=Os02t0751600-01
Chr02	irgsp1_rep	CDS	31592304	31592372	.	+	2	Parent=Os02t0751600-01
Chr02	irgsp1_rep	CDS	31592551	31592618	.	+	2	Parent=Os02t0751600-01
Chr02	irgsp1_rep	three_prime_UTR	31592619	31592670	.	+	.	Parent=Os02t0751600-01
Chr02	irgsp1_rep	three_prime_UTR	31592781	31593106	.	+	.	Parent=Os02t0751600-01
Chr02	irgsp1_rep	mRNA	31591276	31593090	.	+	.	ID=Os02t0751600-02;Name=Os02t0751600-02;Locus_id=Os02g0751600;Oryzabase Gene Symbol Synonym(s)=OsFKBP16-2;Oryzabase Gene Name Synonym(s)=FK506 binding protein 16-2;Note=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type domain containing protein.;Transcript_evidence=AK104401 (DDBJ%2C Best hit),AK060441 (DDBJ%2C Best hit);ORF_evidence=B6SRR2 (UniProt);GO=Biological Process: protein folding (GO:0006457);InterPro=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type%2C domain (IPR001179),Peptidyl-prolyl cis-trans isomerase%2C FKBP-type (IPR023566);NIAS_FLcDNA=006-202-E07,001-011-E03;Oryzabase=10029;Expression=AK104401;TENOR=Os02t0751600-02;KEGG=Os02t0751600-02 (EC:5.2.1.8)
Chr02	irgsp1_rep	five_prime_UTR	31591276	31591279	.	+	.	Parent=Os02t0751600-02
Chr02	irgsp1_rep	CDS	31591280	31591681	.	+	0	Parent=Os02t0751600-02
Chr02	irgsp1_rep	CDS	31591916	31592008	.	+	0	Parent=Os02t0751600-02
Chr02	irgsp1_rep	CDS	31592115	31592175	.	+	0	Parent=Os02t0751600-02
Chr02	irgsp1_rep	CDS	31592304	31592372	.	+	2	Parent=Os02t0751600-02
Chr02	irgsp1_rep	CDS	31592551	31592618	.	+	2	Parent=Os02t0751600-02
Chr02	irgsp1_rep	three_prime_UTR	31592619	31592670	.	+	.	Parent=Os02t0751600-02
Chr02	irgsp1_rep	three_prime_UTR	31592781	31593090	.	+	.	Parent=Os02t0751600-02
Chr02	irgsp1_rep	mRNA	31597740	31600635	.	+	.	ID=Os02t0751800-01;Name=Os02t0751800-01;Locus_id=Os02g0751800;Note=Phosphoglycerate mutase 1 family protein.;Transcript_evidence=AK101802 (DDBJ%2C Best hit);ORF_evidence=B6UF66 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: intramolecular transferase activity%2C phosphotransferases (GO:0016868);InterPro=Phosphoglycerate/bisphosphoglycerate mutase%2C active site (IPR001345),Phosphoglycerate mutase 1 (IPR005952),Histidine phosphatase superfamily%2C clade-1 (IPR013078);NIAS_FLcDNA=J033066J07;Expression=AK101802;TENOR=Os02t0751800-01;KEGG=Os02t0751800-01 (EC:5.4.2.1)
Chr02	irgsp1_rep	five_prime_UTR	31597740	31597914	.	+	.	Parent=Os02t0751800-01
Chr02	irgsp1_rep	five_prime_UTR	31598150	31598150	.	+	.	Parent=Os02t0751800-01
Chr02	irgsp1_rep	CDS	31598151	31598382	.	+	0	Parent=Os02t0751800-01
Chr02	irgsp1_rep	CDS	31598487	31598710	.	+	2	Parent=Os02t0751800-01
Chr02	irgsp1_rep	CDS	31598815	31598933	.	+	0	Parent=Os02t0751800-01
Chr02	irgsp1_rep	CDS	31599035	31599191	.	+	1	Parent=Os02t0751800-01
Chr02	irgsp1_rep	CDS	31599435	31599536	.	+	0	Parent=Os02t0751800-01
Chr02	irgsp1_rep	CDS	31599618	31599737	.	+	0	Parent=Os02t0751800-01
Chr02	irgsp1_rep	CDS	31600127	31600171	.	+	0	Parent=Os02t0751800-01
Chr02	irgsp1_rep	three_prime_UTR	31600172	31600177	.	+	.	Parent=Os02t0751800-01
Chr02	irgsp1_rep	three_prime_UTR	31600268	31600635	.	+	.	Parent=Os02t0751800-01
Chr02	irgsp1_rep	mRNA	31601366	31604391	.	+	.	ID=Os02t0751900-01;Name=Os02t0751900-01;Locus_id=Os02g0751900;Note=Similar to Type I inositol-1%2C4%2C5-trisphosphate 5-phosphatase CVP2 (EC 3.1.3.56) (Cotyledon vascular pattern 2 protein).;Transcript_evidence=AK071003 (DDBJ%2C Best hit);ORF_evidence=D3YBG4 (UniProt);GO=Molecular Function: inositol or phosphatidylinositol phosphatase activity (GO:0004437);InterPro=Inositol polyphosphate-related phosphatase (IPR000300),Endonuclease/exonuclease/phosphatase (IPR005135);NIAS_FLcDNA=J023076N19;Expression=AK071003;TENOR=Os02t0751900-01;KEGG=Os02t0751900-01 (EC:3.1.3.36%2C EC:3.1.3.56)
Chr02	irgsp1_rep	five_prime_UTR	31601366	31601410	.	+	.	Parent=Os02t0751900-01
Chr02	irgsp1_rep	CDS	31601411	31601491	.	+	0	Parent=Os02t0751900-01
Chr02	irgsp1_rep	CDS	31601597	31601687	.	+	0	Parent=Os02t0751900-01
Chr02	irgsp1_rep	CDS	31601843	31601908	.	+	2	Parent=Os02t0751900-01
Chr02	irgsp1_rep	CDS	31602035	31602125	.	+	2	Parent=Os02t0751900-01
Chr02	irgsp1_rep	CDS	31602209	31602313	.	+	1	Parent=Os02t0751900-01
Chr02	irgsp1_rep	CDS	31602526	31603120	.	+	1	Parent=Os02t0751900-01
Chr02	irgsp1_rep	CDS	31603208	31603401	.	+	0	Parent=Os02t0751900-01
Chr02	irgsp1_rep	CDS	31603523	31603631	.	+	1	Parent=Os02t0751900-01
Chr02	irgsp1_rep	CDS	31603773	31603921	.	+	0	Parent=Os02t0751900-01
Chr02	irgsp1_rep	CDS	31604025	31604244	.	+	1	Parent=Os02t0751900-01
Chr02	irgsp1_rep	three_prime_UTR	31604245	31604391	.	+	.	Parent=Os02t0751900-01
Chr02	irgsp1_rep	mRNA	31604657	31608153	.	-	.	ID=Os02t0752000-01;Name=Os02t0752000-01;Locus_id=Os02g0752000;Note=Cellular retinaldehyde-binding/triple function%2C C-terminal domain containing protein.;Transcript_evidence=AK066184 (DDBJ%2C Best hit);ORF_evidence=NP_173637.3 (RefSeq);InterPro=Cellular retinaldehyde-binding/triple function%2C C-terminal (IPR001251),Cellular retinaldehyde-binding/triple function%2C N-terminal (IPR008273),Phosphatidylinositol transfer protein-like%2C N-terminal (IPR011074);NIAS_FLcDNA=J013056M21;Expression=AK066184;TENOR=Os02t0752000-01;KEGG=Os02t0752000-01
Chr02	irgsp1_rep	five_prime_UTR	31608024	31608153	.	-	.	Parent=Os02t0752000-01
Chr02	irgsp1_rep	five_prime_UTR	31607020	31607034	.	-	.	Parent=Os02t0752000-01
Chr02	irgsp1_rep	CDS	31606948	31607019	.	-	0	Parent=Os02t0752000-01
Chr02	irgsp1_rep	CDS	31606565	31606741	.	-	0	Parent=Os02t0752000-01
Chr02	irgsp1_rep	CDS	31606315	31606413	.	-	0	Parent=Os02t0752000-01
Chr02	irgsp1_rep	CDS	31605974	31606216	.	-	0	Parent=Os02t0752000-01
Chr02	irgsp1_rep	CDS	31604922	31605467	.	-	0	Parent=Os02t0752000-01
Chr02	irgsp1_rep	three_prime_UTR	31604657	31604921	.	-	.	Parent=Os02t0752000-01
Chr02	irgsp1_rep	mRNA	31605036	31608146	.	-	.	ID=Os02t0752000-02;Name=Os02t0752000-02;Locus_id=Os02g0752000;Note=Similar to predicted protein.;Transcript_evidence=AK062267 (DDBJ%2C Best hit);ORF_evidence=NP_173637.3 (RefSeq);InterPro=Cellular retinaldehyde-binding/triple function%2C C-terminal (IPR001251),Cellular retinaldehyde-binding/triple function%2C N-terminal (IPR008273),Phosphatidylinositol transfer protein-like%2C N-terminal (IPR011074);NIAS_FLcDNA=001-100-A02;Expression=AK062267;TENOR=Os02t0752000-02;KEGG=Os02t0752000-02
Chr02	irgsp1_rep	five_prime_UTR	31608024	31608146	.	-	.	Parent=Os02t0752000-02
Chr02	irgsp1_rep	five_prime_UTR	31607020	31607038	.	-	.	Parent=Os02t0752000-02
Chr02	irgsp1_rep	CDS	31606948	31607019	.	-	0	Parent=Os02t0752000-02
Chr02	irgsp1_rep	CDS	31606565	31606741	.	-	0	Parent=Os02t0752000-02
Chr02	irgsp1_rep	CDS	31606315	31606413	.	-	0	Parent=Os02t0752000-02
Chr02	irgsp1_rep	CDS	31605974	31606216	.	-	0	Parent=Os02t0752000-02
Chr02	irgsp1_rep	CDS	31605036	31605467	.	-	0	Parent=Os02t0752000-02
Chr02	irgsp1_rep	mRNA	31609801	31614169	.	-	.	ID=Os02t0752200-01;Name=Os02t0752200-01;Locus_id=Os02g0752200;Note=Similar to Beta-D-xylosidase.;Transcript_evidence=AK119887 (DDBJ%2C Best hit);ORF_evidence=Q8W011 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 3%2C N-terminal (IPR001764),Glycoside hydrolase%2C family 3%2C C-terminal (IPR002772),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=002-179-H05;Expression=AK119887;TENOR=Os02t0752200-01;KEGG=Os02t0752200-01
Chr02	irgsp1_rep	five_prime_UTR	31614126	31614169	.	-	.	Parent=Os02t0752200-01
Chr02	irgsp1_rep	CDS	31613715	31614125	.	-	0	Parent=Os02t0752200-01
Chr02	irgsp1_rep	CDS	31612804	31613103	.	-	0	Parent=Os02t0752200-01
Chr02	irgsp1_rep	CDS	31612531	31612700	.	-	0	Parent=Os02t0752200-01
Chr02	irgsp1_rep	CDS	31612315	31612412	.	-	1	Parent=Os02t0752200-01
Chr02	irgsp1_rep	CDS	31610730	31611494	.	-	2	Parent=Os02t0752200-01
Chr02	irgsp1_rep	CDS	31610042	31610640	.	-	2	Parent=Os02t0752200-01
Chr02	irgsp1_rep	three_prime_UTR	31609801	31610041	.	-	.	Parent=Os02t0752200-01
Chr02	irgsp1_rep	mRNA	31610042	31614104	.	+	.	ID=Os02t0752250-00;Name=Os02t0752250-00;Locus_id=Os02g0752250;Note=Hypothetical protein.;Transcript_evidence=tplb0030f15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0752250-00
Chr02	irgsp1_rep	five_prime_UTR	31610042	31610089	.	+	.	Parent=Os02t0752250-00
Chr02	irgsp1_rep	CDS	31610090	31610643	.	+	0	Parent=Os02t0752250-00
Chr02	irgsp1_rep	CDS	31610732	31610831	.	+	1	Parent=Os02t0752250-00
Chr02	irgsp1_rep	three_prime_UTR	31610832	31611502	.	+	.	Parent=Os02t0752250-00
Chr02	irgsp1_rep	three_prime_UTR	31612438	31612697	.	+	.	Parent=Os02t0752250-00
Chr02	irgsp1_rep	three_prime_UTR	31612801	31613092	.	+	.	Parent=Os02t0752250-00
Chr02	irgsp1_rep	three_prime_UTR	31613700	31614104	.	+	.	Parent=Os02t0752250-00
Chr02	irgsp1_rep	mRNA	31622776	31627571	.	-	.	ID=Os02t0752300-01;Name=Os02t0752300-01;Locus_id=Os02g0752300;Note=Conserved hypothetical protein.;Transcript_evidence=AK072544 (DDBJ%2C Best hit);ORF_evidence=B9F311 (UniProt);NIAS_FLcDNA=J023132N16;Expression=AK072544;TENOR=Os02t0752300-01;KEGG=Os02t0752300-01
Chr02	irgsp1_rep	five_prime_UTR	31627400	31627571	.	-	.	Parent=Os02t0752300-01
Chr02	irgsp1_rep	five_prime_UTR	31626654	31626727	.	-	.	Parent=Os02t0752300-01
Chr02	irgsp1_rep	CDS	31625990	31626653	.	-	0	Parent=Os02t0752300-01
Chr02	irgsp1_rep	CDS	31625838	31625891	.	-	2	Parent=Os02t0752300-01
Chr02	irgsp1_rep	CDS	31625544	31625728	.	-	2	Parent=Os02t0752300-01
Chr02	irgsp1_rep	CDS	31623302	31623388	.	-	0	Parent=Os02t0752300-01
Chr02	irgsp1_rep	three_prime_UTR	31622776	31623301	.	-	.	Parent=Os02t0752300-01
Chr02	irgsp1_rep	mRNA	31636483	31638258	.	+	.	ID=Os02t0752600-00;Name=Os02t0752600-00;Locus_id=Os02g0752600;Note=Similar to predicted protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001148541.1 (RefSeq);GO=Biological Process: DNA replication (GO:0006260),Molecular Function: DNA binding (GO:0003677),Molecular Function: catalytic activity (GO:0003824),Molecular Function: DNA-directed DNA polymerase activity (GO:0003887);InterPro=Polymerase/histidinol phosphatase%2C N-terminal (IPR003141),PHP%2C C-terminal (IPR004013),Polymerase/histidinol phosphatase-like (IPR016195);TENOR=Os02t0752600-00;KEGG=Os02t0752600-00
Chr02	irgsp1_rep	CDS	31636483	31636872	.	+	0	Parent=Os02t0752600-00
Chr02	irgsp1_rep	CDS	31636993	31637117	.	+	0	Parent=Os02t0752600-00
Chr02	irgsp1_rep	CDS	31637219	31637533	.	+	1	Parent=Os02t0752600-00
Chr02	irgsp1_rep	CDS	31637652	31637821	.	+	1	Parent=Os02t0752600-00
Chr02	irgsp1_rep	CDS	31637915	31638258	.	+	2	Parent=Os02t0752600-00
Chr02	irgsp1_rep	mRNA	31647952	31650045	.	-	.	ID=Os02t0752701-01;Name=Os02t0752701-01;Locus_id=Os02g0752701;Note=Conserved hypothetical protein.;Transcript_evidence=AK242121 (DDBJ%2C Best hit);ORF_evidence=NP_001173153.1 (RefSeq);NIAS_FLcDNA=J075147D24;TENOR=Os02t0752701-01;KEGG=Os02t0752701-01
Chr02	irgsp1_rep	five_prime_UTR	31648561	31650045	.	-	.	Parent=Os02t0752701-01
Chr02	irgsp1_rep	CDS	31648231	31648560	.	-	0	Parent=Os02t0752701-01
Chr02	irgsp1_rep	three_prime_UTR	31647952	31648230	.	-	.	Parent=Os02t0752701-01
Chr02	irgsp1_rep	mRNA	31648754	31650407	.	+	.	ID=Os02t0752800-01;Name=Os02t0752800-01;Locus_id=Os02g0752800;CGSNL Gene Symbol=ERF49;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 49;Oryzabase Gene Symbol Synonym(s)=OsERF#049%2C OsERF049%2C OsERF49%2C AP2/EREBP#132%2C AP2/EREBP132;Oryzabase Gene Name Synonym(s)=ethylene response factor 49%2C APETALA2/ethylene-responsive element binding protein 132;Note=Similar to Dehydration responsive element binding protein 2B (DREB2B protein).;Transcript_evidence=AK105877 (DDBJ%2C Best hit);ORF_evidence=A7XA61 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=001-204-C05;Oryzabase=10566;Expression=AK105877;TENOR=Os02t0752800-01;KEGG=Os02t0752800-01
Chr02	irgsp1_rep	five_prime_UTR	31648754	31649030	.	+	.	Parent=Os02t0752800-01
Chr02	irgsp1_rep	CDS	31649031	31650047	.	+	0	Parent=Os02t0752800-01
Chr02	irgsp1_rep	three_prime_UTR	31650048	31650407	.	+	.	Parent=Os02t0752800-01
Chr02	irgsp1_rep	mRNA	31648996	31650388	.	+	.	ID=Os02t0752800-02;Name=Os02t0752800-02;Locus_id=Os02g0752800;CGSNL Gene Symbol=ERF49;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 49;Oryzabase Gene Symbol Synonym(s)=OsERF#049%2C OsERF049%2C OsERF49%2C AP2/EREBP#132%2C AP2/EREBP132;Oryzabase Gene Name Synonym(s)=ethylene response factor 49%2C APETALA2/ethylene-responsive element binding protein 132;Note=Similar to Dehydration responsive element binding protein 2B (DREB2B protein).;Transcript_evidence=AK105991 (DDBJ%2C Best hit);ORF_evidence=A7XA61 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=001-205-H01;Oryzabase=10566;Expression=AK105991;TENOR=Os02t0752800-02;KEGG=Os02t0752800-02
Chr02	irgsp1_rep	five_prime_UTR	31648996	31649030	.	+	.	Parent=Os02t0752800-02
Chr02	irgsp1_rep	CDS	31649031	31650047	.	+	0	Parent=Os02t0752800-02
Chr02	irgsp1_rep	three_prime_UTR	31650048	31650388	.	+	.	Parent=Os02t0752800-02
Chr02	irgsp1_rep	mRNA	31663080	31665818	.	+	.	ID=Os02t0753000-01;Name=Os02t0753000-01;Locus_id=Os02g0753000;CGSNL Gene Symbol=TPP4;CGSNL Gene Name=TREHALOSE-6-PHOSPHATE PHOSHPHATASE 4;Oryzabase Gene Symbol Synonym(s)=OsTPP4%2C OsTPP7;Note=Similar to Trehalose-6-phosphate phosphatase.;Transcript_evidence=AK121015 (DDBJ%2C Best hit);ORF_evidence=Q1W5S5 (UniProt);GO=Biological Process: trehalose biosynthetic process (GO:0005992),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Trehalose-phosphatase (IPR003337),HAD-superfamily hydrolase%2C subfamily IIB (IPR006379),HAD-like domain (IPR023214);NIAS_FLcDNA=J023048F14;Oryzabase=9979;Expression=AK121015;TENOR=Os02t0753000-01;KEGG=Os02t0753000-01
Chr02	irgsp1_rep	five_prime_UTR	31663080	31663196	.	+	.	Parent=Os02t0753000-01
Chr02	irgsp1_rep	CDS	31663197	31663460	.	+	0	Parent=Os02t0753000-01
Chr02	irgsp1_rep	CDS	31663613	31663753	.	+	0	Parent=Os02t0753000-01
Chr02	irgsp1_rep	CDS	31663864	31663935	.	+	0	Parent=Os02t0753000-01
Chr02	irgsp1_rep	CDS	31664020	31664097	.	+	0	Parent=Os02t0753000-01
Chr02	irgsp1_rep	CDS	31664190	31664243	.	+	0	Parent=Os02t0753000-01
Chr02	irgsp1_rep	CDS	31664369	31664470	.	+	0	Parent=Os02t0753000-01
Chr02	irgsp1_rep	CDS	31664619	31664696	.	+	0	Parent=Os02t0753000-01
Chr02	irgsp1_rep	CDS	31664829	31664898	.	+	0	Parent=Os02t0753000-01
Chr02	irgsp1_rep	CDS	31665099	31665169	.	+	2	Parent=Os02t0753000-01
Chr02	irgsp1_rep	CDS	31665333	31665425	.	+	0	Parent=Os02t0753000-01
Chr02	irgsp1_rep	CDS	31665536	31665616	.	+	0	Parent=Os02t0753000-01
Chr02	irgsp1_rep	three_prime_UTR	31665617	31665818	.	+	.	Parent=Os02t0753000-01
Chr02	irgsp1_rep	mRNA	31664161	31664470	.	-	.	ID=Os02t0753100-00;Name=Os02t0753100-00;Locus_id=Os02g0753100;Note=Non-protein coding transcript.;Transcript_evidence=BT086933 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0753100-00
Chr02	irgsp1_rep	exon	31664375	31664470	.	-	.	Parent=Os02t0753100-00
Chr02	irgsp1_rep	exon	31664161	31664246	.	-	.	Parent=Os02t0753100-00
Chr02	irgsp1_rep	mRNA	31673161	31675228	.	+	.	ID=Os02t0753200-01;Name=Os02t0753200-01;Locus_id=Os02g0753200;Note=Conserved hypothetical protein.;Transcript_evidence=AK067176 (DDBJ%2C Best hit);ORF_evidence=B8AIS6 (UniProt);NIAS_FLcDNA=J013097D23;Expression=AK067176;TENOR=Os02t0753200-01;KEGG=Os02t0753200-01
Chr02	irgsp1_rep	five_prime_UTR	31673161	31673167	.	+	.	Parent=Os02t0753200-01
Chr02	irgsp1_rep	CDS	31673168	31673549	.	+	0	Parent=Os02t0753200-01
Chr02	irgsp1_rep	CDS	31674567	31674717	.	+	2	Parent=Os02t0753200-01
Chr02	irgsp1_rep	CDS	31674832	31675048	.	+	1	Parent=Os02t0753200-01
Chr02	irgsp1_rep	three_prime_UTR	31675049	31675228	.	+	.	Parent=Os02t0753200-01
Chr02	irgsp1_rep	mRNA	31676474	31677436	.	+	.	ID=Os02t0753300-01;Name=Os02t0753300-01;Locus_id=Os02g0753300;Note=Lipoxygenase%2C LH2 domain containing protein.;Transcript_evidence=AK065736 (DDBJ%2C Best hit),AK104930 (DDBJ%2C Best hit);ORF_evidence=NP_001149031.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Lipoxygenase%2C LH2 (IPR001024),Lipase/lipooxygenase%2C PLAT/LH2 (IPR008976);NIAS_FLcDNA=J013038J04,001-045-F02;TENOR=Os02t0753300-01
Chr02	irgsp1_rep	five_prime_UTR	31676474	31676542	.	+	.	Parent=Os02t0753300-01
Chr02	irgsp1_rep	CDS	31676543	31676644	.	+	0	Parent=Os02t0753300-01
Chr02	irgsp1_rep	CDS	31676711	31677190	.	+	0	Parent=Os02t0753300-01
Chr02	irgsp1_rep	three_prime_UTR	31677191	31677436	.	+	.	Parent=Os02t0753300-01
Chr02	irgsp1_rep	mRNA	31683482	31684818	.	+	.	ID=Os02t0753400-01;Name=Os02t0753400-01;Locus_id=Os02g0753400;Note=Conserved hypothetical protein.;Transcript_evidence=AK240796 (DDBJ%2C Best hit);ORF_evidence=NP_001048146.2 (RefSeq);NIAS_FLcDNA=J065002C06;TENOR=Os02t0753400-01;KEGG=Os02t0753400-01
Chr02	irgsp1_rep	five_prime_UTR	31683482	31683545	.	+	.	Parent=Os02t0753400-01
Chr02	irgsp1_rep	CDS	31683546	31684484	.	+	0	Parent=Os02t0753400-01
Chr02	irgsp1_rep	three_prime_UTR	31684485	31684818	.	+	.	Parent=Os02t0753400-01
Chr02	irgsp1_rep	mRNA	31686188	31689398	.	-	.	ID=Os02t0753500-01;Name=Os02t0753500-01;Locus_id=Os02g0753500;Oryzabase Gene Symbol Synonym(s)=OsSTA78;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK072727 (DDBJ%2C Best hit);ORF_evidence=A3ABG0 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J023140L15;Oryzabase=19376;TENOR=Os02t0753500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	31689397	31689398	.	-	.	Parent=Os02t0753500-01
Chr02	irgsp1_rep	CDS	31689371	31689396	.	-	0	Parent=Os02t0753500-01
Chr02	irgsp1_rep	CDS	31688122	31688317	.	-	1	Parent=Os02t0753500-01
Chr02	irgsp1_rep	CDS	31687813	31687985	.	-	0	Parent=Os02t0753500-01
Chr02	irgsp1_rep	CDS	31687365	31687698	.	-	1	Parent=Os02t0753500-01
Chr02	irgsp1_rep	CDS	31687112	31687261	.	-	0	Parent=Os02t0753500-01
Chr02	irgsp1_rep	three_prime_UTR	31687106	31687111	.	-	.	Parent=Os02t0753500-01
Chr02	irgsp1_rep	three_prime_UTR	31686188	31686544	.	-	.	Parent=Os02t0753500-01
Chr02	irgsp1_rep	mRNA	31696561	31697376	.	+	.	ID=Os02t0753700-01;Name=Os02t0753700-01;Locus_id=Os02g0753700;Oryzabase Gene Symbol Synonym(s)=OsVQ9;Oryzabase Gene Name Synonym(s)=VQ motif-containing protein 9;Note=VQ domain containing protein.;Transcript_evidence=AK103542 (DDBJ%2C Best hit),AK062661 (DDBJ%2C Best hit);ORF_evidence=NP_001147234.1 (RefSeq);InterPro=VQ (IPR008889);NIAS_FLcDNA=J033132D03,001-105-F05;Oryzabase=13625;Expression=AK103542;TENOR=Os02t0753700-01;KEGG=Os02t0753700-01
Chr02	irgsp1_rep	five_prime_UTR	31696561	31696606	.	+	.	Parent=Os02t0753700-01
Chr02	irgsp1_rep	CDS	31696607	31697179	.	+	0	Parent=Os02t0753700-01
Chr02	irgsp1_rep	three_prime_UTR	31697180	31697376	.	+	.	Parent=Os02t0753700-01
Chr02	irgsp1_rep	mRNA	31698204	31700438	.	-	.	ID=Os02t0753800-01;Name=Os02t0753800-01;Locus_id=Os02g0753800;RAP-DB Gene Symbol Synonym(s)=ANN2%2C OsANN2;RAP-DB Gene Name Synonym(s)=ANNEXIN 2%2C Annexin 2;CGSNL Gene Symbol=ANN2;CGSNL Gene Name=ANNEXIN 2;Oryzabase Gene Symbol Synonym(s)=OsANN2%2C OsANN1%2C ANN1;Oryzabase Gene Name Synonym(s)=Annexin 2%2C annexin 1;Note=Calcium-binding protein%2C Annexin%2C Heat and drought stress tolerance;Transcript_evidence=AK101787;ORF_evidence=Q6Z6A7;GO=Molecular Function: calcium ion binding (GO:0005509),Molecular Function: calcium-dependent phospholipid binding (GO:0005544);InterPro=Annexin (IPR001464),Annexin%2C plant (IPR009118),Annexin repeat (IPR018502),Annexin repeat%2C conserved site (IPR018252);NIAS_FLcDNA=J033065F07;Manual Curation=May 31%2C 2016;Literature_PMID=26085678,24286292;Oryzabase=15465;Expression=AK101787;TENOR=Os02t0753800-01;KEGG=Os02t0753800-01
Chr02	irgsp1_rep	five_prime_UTR	31700325	31700438	.	-	.	Parent=Os02t0753800-01
Chr02	irgsp1_rep	CDS	31700249	31700324	.	-	0	Parent=Os02t0753800-01
Chr02	irgsp1_rep	CDS	31700004	31700149	.	-	2	Parent=Os02t0753800-01
Chr02	irgsp1_rep	CDS	31699689	31699907	.	-	0	Parent=Os02t0753800-01
Chr02	irgsp1_rep	CDS	31698907	31699119	.	-	0	Parent=Os02t0753800-01
Chr02	irgsp1_rep	CDS	31698367	31698657	.	-	0	Parent=Os02t0753800-01
Chr02	irgsp1_rep	three_prime_UTR	31698204	31698366	.	-	.	Parent=Os02t0753800-01
Chr02	irgsp1_rep	mRNA	31705279	31706797	.	-	.	ID=Os02t0753850-00;Name=Os02t0753850-00;Locus_id=Os02g0753850;Note=Non-protein coding transcript.;Transcript_evidence=tplb0051f01 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os02t0753850-00
Chr02	irgsp1_rep	exon	31706712	31706797	.	-	.	Parent=Os02t0753850-00
Chr02	irgsp1_rep	exon	31705957	31706544	.	-	.	Parent=Os02t0753850-00
Chr02	irgsp1_rep	exon	31705475	31705611	.	-	.	Parent=Os02t0753850-00
Chr02	irgsp1_rep	exon	31705279	31705379	.	-	.	Parent=Os02t0753850-00
Chr02	irgsp1_rep	mRNA	31706165	31707298	.	+	.	ID=Os02t0753900-01;Name=Os02t0753900-01;Locus_id=Os02g0753900;Note=Hypothetical conserved gene.;Transcript_evidence=AK242419 (DDBJ%2C Best hit);ORF_evidence=NP_001048150.2 (RefSeq);NIAS_FLcDNA=J080083B04;TENOR=Os02t0753900-01;KEGG=Os02t0753900-01
Chr02	irgsp1_rep	CDS	31706165	31706539	.	+	0	Parent=Os02t0753900-01
Chr02	irgsp1_rep	CDS	31706706	31706842	.	+	0	Parent=Os02t0753900-01
Chr02	irgsp1_rep	CDS	31706947	31707061	.	+	1	Parent=Os02t0753900-01
Chr02	irgsp1_rep	three_prime_UTR	31707062	31707298	.	+	.	Parent=Os02t0753900-01
Chr02	irgsp1_rep	mRNA	31707658	31710991	.	+	.	ID=Os02t0754000-01;Name=Os02t0754000-01;Locus_id=Os02g0754000;Note=Similar to TLD family protein.;Transcript_evidence=AK101362 (DDBJ%2C Best hit);ORF_evidence=B6TJ62 (UniProt);NIAS_FLcDNA=J033035I12;Expression=AK101362;TENOR=Os02t0754000-01;KEGG=Os02t0754000-01
Chr02	irgsp1_rep	five_prime_UTR	31707658	31707959	.	+	.	Parent=Os02t0754000-01
Chr02	irgsp1_rep	CDS	31707960	31708070	.	+	0	Parent=Os02t0754000-01
Chr02	irgsp1_rep	CDS	31708814	31709322	.	+	0	Parent=Os02t0754000-01
Chr02	irgsp1_rep	CDS	31709404	31709593	.	+	1	Parent=Os02t0754000-01
Chr02	irgsp1_rep	three_prime_UTR	31709594	31709812	.	+	.	Parent=Os02t0754000-01
Chr02	irgsp1_rep	three_prime_UTR	31709901	31710525	.	+	.	Parent=Os02t0754000-01
Chr02	irgsp1_rep	three_prime_UTR	31710610	31710991	.	+	.	Parent=Os02t0754000-01
Chr02	irgsp1_rep	mRNA	31707727	31710974	.	+	.	ID=Os02t0754000-02;Name=Os02t0754000-02;Locus_id=Os02g0754000;Note=TLDc domain containing protein.;Transcript_evidence=AK060979 (DDBJ%2C Best hit);ORF_evidence=B6TJ62 (UniProt);InterPro=TLDc (IPR006571);NIAS_FLcDNA=006-202-G05;Expression=AK060979;TENOR=Os02t0754000-02;KEGG=Os02t0754000-02
Chr02	irgsp1_rep	five_prime_UTR	31707727	31707959	.	+	.	Parent=Os02t0754000-02
Chr02	irgsp1_rep	CDS	31707960	31708070	.	+	0	Parent=Os02t0754000-02
Chr02	irgsp1_rep	CDS	31708814	31709322	.	+	0	Parent=Os02t0754000-02
Chr02	irgsp1_rep	CDS	31709404	31709476	.	+	1	Parent=Os02t0754000-02
Chr02	irgsp1_rep	CDS	31709732	31709812	.	+	0	Parent=Os02t0754000-02
Chr02	irgsp1_rep	CDS	31709901	31709964	.	+	0	Parent=Os02t0754000-02
Chr02	irgsp1_rep	CDS	31710245	31710332	.	+	2	Parent=Os02t0754000-02
Chr02	irgsp1_rep	CDS	31710441	31710525	.	+	1	Parent=Os02t0754000-02
Chr02	irgsp1_rep	CDS	31710610	31710693	.	+	0	Parent=Os02t0754000-02
Chr02	irgsp1_rep	three_prime_UTR	31710694	31710974	.	+	.	Parent=Os02t0754000-02
Chr02	irgsp1_rep	mRNA	31711381	31716394	.	-	.	ID=Os02t0754100-01;Name=Os02t0754100-01;Locus_id=Os02g0754100;Note=Similar to S1 self-incompatibility locus-linked pollen G211 protein.;Transcript_evidence=AK072432 (DDBJ%2C Best hit);ORF_evidence=B8AIS9 (UniProt);GO=Molecular Function: RNA binding (GO:0003723),Molecular Function: ribonuclease activity (GO:0004540);InterPro=Ribonuclease II/R (IPR001900),Ribonuclease II/R%2C conserved site (IPR022966);NIAS_FLcDNA=J023098A15;Expression=AK072432;TENOR=Os02t0754100-01;KEGG=Os02t0754100-01
Chr02	irgsp1_rep	five_prime_UTR	31716153	31716394	.	-	.	Parent=Os02t0754100-01
Chr02	irgsp1_rep	CDS	31715754	31716152	.	-	0	Parent=Os02t0754100-01
Chr02	irgsp1_rep	CDS	31715603	31715658	.	-	0	Parent=Os02t0754100-01
Chr02	irgsp1_rep	CDS	31715451	31715514	.	-	1	Parent=Os02t0754100-01
Chr02	irgsp1_rep	CDS	31712447	31714657	.	-	0	Parent=Os02t0754100-01
Chr02	irgsp1_rep	CDS	31712292	31712363	.	-	0	Parent=Os02t0754100-01
Chr02	irgsp1_rep	CDS	31711807	31712208	.	-	0	Parent=Os02t0754100-01
Chr02	irgsp1_rep	three_prime_UTR	31711381	31711806	.	-	.	Parent=Os02t0754100-01
Chr02	irgsp1_rep	mRNA	31719725	31721468	.	+	.	ID=Os02t0754300-01;Name=Os02t0754300-01;Locus_id=Os02g0754300;Note=Ribosomal protein L29 family protein.;Transcript_evidence=AK068621 (DDBJ%2C Best hit),AK059012 (DDBJ%2C Best hit),AK099805 (DDBJ%2C Best hit);ORF_evidence=NP_001104944.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L29 (IPR001854);NIAS_FLcDNA=J013153I07,001-021-A04,J013098F16;TENOR=Os02t0754300-01
Chr02	irgsp1_rep	five_prime_UTR	31719725	31719758	.	+	.	Parent=Os02t0754300-01
Chr02	irgsp1_rep	CDS	31719759	31720112	.	+	0	Parent=Os02t0754300-01
Chr02	irgsp1_rep	CDS	31721054	31721197	.	+	0	Parent=Os02t0754300-01
Chr02	irgsp1_rep	three_prime_UTR	31721198	31721468	.	+	.	Parent=Os02t0754300-01
Chr02	irgsp1_rep	mRNA	31724532	31725002	.	-	.	ID=Os02t0754400-00;Name=Os02t0754400-00;Locus_id=Os02g0754400;Note=Hypothetical conserved gene.;Transcript_evidence=CT835463 (DDBJ%2C Best hit);ORF_evidence=Q6Z699 (UniProt);TENOR=Os02t0754400-00;KEGG=Os02t0754400-00
Chr02	irgsp1_rep	CDS	31724820	31725002	.	-	0	Parent=Os02t0754400-00
Chr02	irgsp1_rep	three_prime_UTR	31724532	31724819	.	-	.	Parent=Os02t0754400-00
Chr02	irgsp1_rep	mRNA	31725230	31725697	.	+	.	ID=Os02t0754450-00;Name=Os02t0754450-00;Locus_id=Os02g0754450;Note=Hypothetical protein.;Transcript_evidence=EU971393 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0754450-00
Chr02	irgsp1_rep	five_prime_UTR	31725230	31725315	.	+	.	Parent=Os02t0754450-00
Chr02	irgsp1_rep	CDS	31725316	31725636	.	+	0	Parent=Os02t0754450-00
Chr02	irgsp1_rep	three_prime_UTR	31725637	31725697	.	+	.	Parent=Os02t0754450-00
Chr02	irgsp1_rep	mRNA	31739493	31747368	.	+	.	ID=Os02t0754500-01;Name=Os02t0754500-01;Locus_id=Os02g0754500;RAP-DB Gene Symbol Synonym(s)=OM64;RAP-DB Gene Name Synonym(s)=mitochondrial outer membrane protein 64;Note=Putative mitochondrial outer membrane protein 64%2C Negative regulation of brown planthopper (BPH) and striped stem borer (SSB) resistance%2C Resistance to both piercing-sucking and chewing insects;Transcript_evidence=AK105696,AK069965;ORF_evidence=Q6Z697;GO=Molecular Function: protein binding (GO:0005515);InterPro=Amidase signature (AS) superfamily (IPR036928),Tetratricopeptide-like helical domain superfamily (IPR011990),Amidase signature domain (IPR023631),Tetratricopeptide repeat-containing domain (IPR013026),Tetratricopeptide repeat (IPR019734),Tetratricopeptide repeat 1 (IPR001440);NIAS_FLcDNA=001-201-C11,J023039E12;Manual Curation=July 8%2C 2020;Literature_PMID=32542992;TENOR=Os02t0754500-01;Subcellular location=mitochondrion (GO:0005739)
Chr02	irgsp1_rep	five_prime_UTR	31739493	31739625	.	+	.	Parent=Os02t0754500-01
Chr02	irgsp1_rep	CDS	31739626	31739891	.	+	0	Parent=Os02t0754500-01
Chr02	irgsp1_rep	CDS	31739989	31740141	.	+	1	Parent=Os02t0754500-01
Chr02	irgsp1_rep	CDS	31740892	31741016	.	+	1	Parent=Os02t0754500-01
Chr02	irgsp1_rep	CDS	31741806	31741931	.	+	2	Parent=Os02t0754500-01
Chr02	irgsp1_rep	CDS	31742450	31742632	.	+	2	Parent=Os02t0754500-01
Chr02	irgsp1_rep	CDS	31742733	31742877	.	+	2	Parent=Os02t0754500-01
Chr02	irgsp1_rep	CDS	31743521	31743689	.	+	1	Parent=Os02t0754500-01
Chr02	irgsp1_rep	CDS	31744152	31744286	.	+	0	Parent=Os02t0754500-01
Chr02	irgsp1_rep	CDS	31744365	31744571	.	+	0	Parent=Os02t0754500-01
Chr02	irgsp1_rep	CDS	31745115	31745242	.	+	0	Parent=Os02t0754500-01
Chr02	irgsp1_rep	CDS	31745322	31745373	.	+	1	Parent=Os02t0754500-01
Chr02	irgsp1_rep	CDS	31746009	31746078	.	+	0	Parent=Os02t0754500-01
Chr02	irgsp1_rep	CDS	31746997	31747079	.	+	2	Parent=Os02t0754500-01
Chr02	irgsp1_rep	three_prime_UTR	31747080	31747368	.	+	.	Parent=Os02t0754500-01
Chr02	irgsp1_rep	mRNA	31747712	31749526	.	+	.	ID=Os02t0754600-01;Name=Os02t0754600-01;Locus_id=Os02g0754600;Note=Conserved hypothetical protein.;Transcript_evidence=AK108420 (DDBJ%2C Best hit);ORF_evidence=B8AIT2 (UniProt);NIAS_FLcDNA=002-142-H12;Expression=AK108420;TENOR=Os02t0754600-01;KEGG=Os02t0754600-01
Chr02	irgsp1_rep	five_prime_UTR	31747712	31747764	.	+	.	Parent=Os02t0754600-01
Chr02	irgsp1_rep	CDS	31747765	31748563	.	+	0	Parent=Os02t0754600-01
Chr02	irgsp1_rep	CDS	31748823	31749166	.	+	2	Parent=Os02t0754600-01
Chr02	irgsp1_rep	three_prime_UTR	31749167	31749526	.	+	.	Parent=Os02t0754600-01
Chr02	irgsp1_rep	mRNA	31747764	31749187	.	-	.	ID=Os02t0754650-00;Name=Os02t0754650-00;Locus_id=Os02g0754650;Note=Hypothetical protein.;Transcript_evidence=tplb0056d17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0754650-00
Chr02	irgsp1_rep	CDS	31748822	31749187	.	-	0	Parent=Os02t0754650-00
Chr02	irgsp1_rep	CDS	31747764	31748562	.	-	0	Parent=Os02t0754650-00
Chr02	irgsp1_rep	mRNA	31749364	31754456	.	-	.	ID=Os02t0754700-01;Name=Os02t0754700-01;Locus_id=Os02g0754700;Note=Similar to Histidyl-tRNA synthetase (EC 6.1.1.21).;Transcript_evidence=AK066904 (DDBJ%2C Best hit);ORF_evidence=NP_001150679.1 (RefSeq);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: histidyl-tRNA aminoacylation (GO:0006427),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: histidine-tRNA ligase activity (GO:0004821),Molecular Function: ATP binding (GO:0005524);InterPro=Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved domain (IPR002314),Anticodon-binding (IPR004154),Histidyl-tRNA synthetase%2C class IIa (IPR004516),Aminoacyl-tRNA synthetase%2C class II (IPR006195),Histidyl-tRNA synthetase%2C class IIa%2C subgroup (IPR015807);NIAS_FLcDNA=J013092L05;TENOR=Os02t0754700-01
Chr02	irgsp1_rep	five_prime_UTR	31754408	31754456	.	-	.	Parent=Os02t0754700-01
Chr02	irgsp1_rep	CDS	31754117	31754407	.	-	0	Parent=Os02t0754700-01
Chr02	irgsp1_rep	CDS	31753918	31754013	.	-	0	Parent=Os02t0754700-01
Chr02	irgsp1_rep	CDS	31753545	31753633	.	-	0	Parent=Os02t0754700-01
Chr02	irgsp1_rep	CDS	31753257	31753386	.	-	1	Parent=Os02t0754700-01
Chr02	irgsp1_rep	CDS	31753035	31753127	.	-	0	Parent=Os02t0754700-01
Chr02	irgsp1_rep	CDS	31752577	31752651	.	-	0	Parent=Os02t0754700-01
Chr02	irgsp1_rep	CDS	31751722	31751839	.	-	0	Parent=Os02t0754700-01
Chr02	irgsp1_rep	CDS	31751277	31751419	.	-	2	Parent=Os02t0754700-01
Chr02	irgsp1_rep	CDS	31750352	31750480	.	-	0	Parent=Os02t0754700-01
Chr02	irgsp1_rep	CDS	31749850	31750010	.	-	0	Parent=Os02t0754700-01
Chr02	irgsp1_rep	CDS	31749638	31749776	.	-	1	Parent=Os02t0754700-01
Chr02	irgsp1_rep	three_prime_UTR	31749364	31749637	.	-	.	Parent=Os02t0754700-01
Chr02	irgsp1_rep	mRNA	31749371	31754433	.	-	.	ID=Os02t0754700-02;Name=Os02t0754700-02;Locus_id=Os02g0754700;Note=Similar to Histidyl-tRNA synthetase (EC 6.1.1.21).;Transcript_evidence=AK099136 (DDBJ%2C Best hit);ORF_evidence=NP_001150679.1 (RefSeq);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: histidyl-tRNA aminoacylation (GO:0006427),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: histidine-tRNA ligase activity (GO:0004821),Molecular Function: ATP binding (GO:0005524);InterPro=Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved domain (IPR002314),Anticodon-binding (IPR004154),Histidyl-tRNA synthetase%2C class IIa (IPR004516),Aminoacyl-tRNA synthetase%2C class II (IPR006195),Histidyl-tRNA synthetase%2C class IIa%2C subgroup (IPR015807);NIAS_FLcDNA=J023049L24;TENOR=Os02t0754700-02
Chr02	irgsp1_rep	five_prime_UTR	31754408	31754433	.	-	.	Parent=Os02t0754700-02
Chr02	irgsp1_rep	CDS	31754117	31754407	.	-	0	Parent=Os02t0754700-02
Chr02	irgsp1_rep	CDS	31753918	31754013	.	-	0	Parent=Os02t0754700-02
Chr02	irgsp1_rep	CDS	31753545	31753633	.	-	0	Parent=Os02t0754700-02
Chr02	irgsp1_rep	CDS	31753257	31753386	.	-	1	Parent=Os02t0754700-02
Chr02	irgsp1_rep	CDS	31753035	31753127	.	-	0	Parent=Os02t0754700-02
Chr02	irgsp1_rep	CDS	31752577	31752651	.	-	0	Parent=Os02t0754700-02
Chr02	irgsp1_rep	CDS	31751722	31751839	.	-	0	Parent=Os02t0754700-02
Chr02	irgsp1_rep	CDS	31751277	31751419	.	-	2	Parent=Os02t0754700-02
Chr02	irgsp1_rep	CDS	31750352	31750480	.	-	0	Parent=Os02t0754700-02
Chr02	irgsp1_rep	CDS	31749850	31750010	.	-	0	Parent=Os02t0754700-02
Chr02	irgsp1_rep	CDS	31749638	31749776	.	-	1	Parent=Os02t0754700-02
Chr02	irgsp1_rep	three_prime_UTR	31749371	31749637	.	-	.	Parent=Os02t0754700-02
Chr02	irgsp1_rep	mRNA	31754653	31758296	.	+	.	ID=Os02t0754800-01;Name=Os02t0754800-01;Locus_id=Os02g0754800;Note=CytoChrome oxidase assembly protein 1 domain containing protein.;Transcript_evidence=AK241992 (DDBJ%2C Best hit);ORF_evidence=B9F323 (UniProt);InterPro=CytoChrome oxidase assembly protein 1 (IPR014807);NIAS_FLcDNA=J075099E22;TENOR=Os02t0754800-01;KEGG=Os02t0754800-01
Chr02	irgsp1_rep	five_prime_UTR	31754653	31754681	.	+	.	Parent=Os02t0754800-01
Chr02	irgsp1_rep	CDS	31754682	31754815	.	+	0	Parent=Os02t0754800-01
Chr02	irgsp1_rep	CDS	31754910	31755068	.	+	1	Parent=Os02t0754800-01
Chr02	irgsp1_rep	CDS	31757374	31757566	.	+	1	Parent=Os02t0754800-01
Chr02	irgsp1_rep	three_prime_UTR	31757567	31758296	.	+	.	Parent=Os02t0754800-01
Chr02	irgsp1_rep	mRNA	31759161	31760356	.	-	.	ID=Os02t0754900-01;Name=Os02t0754900-01;Locus_id=Os02g0754900;Oryzabase Gene Symbol Synonym(s)=OsAPRL3;Oryzabase Gene Name Synonym(s)=adenosine 5'-phosphosulfate reductase-like protein 3;Note=Similar to adenosine 5'-phosphosulfate reductase 4.;Transcript_evidence=AK062624 (DDBJ%2C Best hit);ORF_evidence=Q84P95 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454);InterPro=Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766);NIAS_FLcDNA=001-105-B12;Oryzabase=14070;Expression=AK062624;TENOR=Os02t0754900-01;KEGG=Os02t0754900-01
Chr02	irgsp1_rep	five_prime_UTR	31760356	31760356	.	-	.	Parent=Os02t0754900-01
Chr02	irgsp1_rep	CDS	31760231	31760355	.	-	0	Parent=Os02t0754900-01
Chr02	irgsp1_rep	CDS	31760013	31760137	.	-	1	Parent=Os02t0754900-01
Chr02	irgsp1_rep	CDS	31759282	31759727	.	-	2	Parent=Os02t0754900-01
Chr02	irgsp1_rep	three_prime_UTR	31759161	31759281	.	-	.	Parent=Os02t0754900-01
Chr02	irgsp1_rep	mRNA	31763222	31768620	.	-	.	ID=Os02t0755000-01;Name=Os02t0755000-01;Locus_id=Os02g0755000;RAP-DB Gene Symbol Synonym(s)=OsTSD2;CGSNL Gene Symbol=TSD2;CGSNL Gene Name=TUMOROUS SHOOT DEVELOPMENT 2;Oryzabase Gene Symbol Synonym(s)=OsTSD2%2C OsQUA2%2C QUA2;Oryzabase Gene Name Synonym(s)=TUMOROUS SHOOT DEVELOPMENT2%2C QUASIMODO2%2C QUASIMODO 2;Note=Putative methyltransferase%2C Pectin methyltransferase%2C Pectin synthesis and methylesterification%2C Root development%2C Cellular adhesion%2C Salt tolerance%2C Ion homeostasis;Transcript_evidence=AK288226;ORF_evidence=Q6Z692;GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Putative S-adenosyl-L-methionine-dependent methyltransferase (IPR004159),S-adenosyl-L-methionine-dependent methyltransferase (IPR029063);NIAS_FLcDNA=J090012E04;Manual Curation=April 30%2C 2020;Literature_PMID=30536744,27497286;Oryzabase=21329;TENOR=Os02t0755000-01;KEGG=Os02t0755000-01
Chr02	irgsp1_rep	five_prime_UTR	31768408	31768620	.	-	.	Parent=Os02t0755000-01
Chr02	irgsp1_rep	CDS	31767779	31768407	.	-	0	Parent=Os02t0755000-01
Chr02	irgsp1_rep	CDS	31767560	31767689	.	-	1	Parent=Os02t0755000-01
Chr02	irgsp1_rep	CDS	31766204	31766444	.	-	0	Parent=Os02t0755000-01
Chr02	irgsp1_rep	CDS	31765612	31765834	.	-	2	Parent=Os02t0755000-01
Chr02	irgsp1_rep	CDS	31765327	31765490	.	-	1	Parent=Os02t0755000-01
Chr02	irgsp1_rep	CDS	31764914	31765217	.	-	2	Parent=Os02t0755000-01
Chr02	irgsp1_rep	CDS	31764465	31764603	.	-	1	Parent=Os02t0755000-01
Chr02	irgsp1_rep	CDS	31763710	31763862	.	-	0	Parent=Os02t0755000-01
Chr02	irgsp1_rep	three_prime_UTR	31763222	31763709	.	-	.	Parent=Os02t0755000-01
Chr02	irgsp1_rep	mRNA	31773356	31776401	.	-	.	ID=Os02t0755200-01;Name=Os02t0755200-01;Locus_id=Os02g0755200;Oryzabase Gene Symbol Synonym(s)=OsHDMA702%2C HDMA702%2C OsPAO8%2C PAO8;Oryzabase Gene Name Synonym(s)=SWIRM domain-containing protein HDMA702%2C histone lysine-specific demethylase 702%2C polyamine oxidase 8;Note=Similar to amine oxidase family protein.;Transcript_evidence=AK070699 (DDBJ%2C Best hit);ORF_evidence=XP_002886450.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: protein binding (GO:0005515),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Amine oxidase (IPR002937),SWIRM (IPR007526),Homeodomain-like (IPR009057),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=J023056I20;Oryzabase=12522;TENOR=Os02t0755200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	31776288	31776401	.	-	.	Parent=Os02t0755200-01
Chr02	irgsp1_rep	CDS	31773738	31776287	.	-	0	Parent=Os02t0755200-01
Chr02	irgsp1_rep	three_prime_UTR	31773356	31773737	.	-	.	Parent=Os02t0755200-01
Chr02	irgsp1_rep	mRNA	31781578	31787144	.	+	.	ID=Os02t0755400-01;Name=Os02t0755400-01;Locus_id=Os02g0755400;Note=Similar to RNA recognition motif-containing protein SEB-4.;Transcript_evidence=AK106338 (DDBJ%2C Best hit);ORF_evidence=B9F324 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=002-101-G04;Expression=AK106338;TENOR=Os02t0755400-01;KEGG=Os02t0755400-01
Chr02	irgsp1_rep	five_prime_UTR	31781578	31781762	.	+	.	Parent=Os02t0755400-01
Chr02	irgsp1_rep	CDS	31781763	31782035	.	+	0	Parent=Os02t0755400-01
Chr02	irgsp1_rep	CDS	31782142	31782265	.	+	0	Parent=Os02t0755400-01
Chr02	irgsp1_rep	CDS	31784149	31784282	.	+	2	Parent=Os02t0755400-01
Chr02	irgsp1_rep	three_prime_UTR	31784283	31786640	.	+	.	Parent=Os02t0755400-01
Chr02	irgsp1_rep	three_prime_UTR	31786780	31787144	.	+	.	Parent=Os02t0755400-01
Chr02	irgsp1_rep	mRNA	31781821	31782306	.	-	.	ID=Os02t0755450-00;Name=Os02t0755450-00;Locus_id=Os02g0755450;Note=Hypothetical gene.;Transcript_evidence=EU941442 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0755450-00
Chr02	irgsp1_rep	five_prime_UTR	31782237	31782306	.	-	.	Parent=Os02t0755450-00
Chr02	irgsp1_rep	CDS	31781821	31782236	.	-	0	Parent=Os02t0755450-00
Chr02	irgsp1_rep	mRNA	31787348	31789031	.	-	.	ID=Os02t0755500-01;Name=Os02t0755500-01;Locus_id=Os02g0755500;Note=Similar to UDP-glycosyltransferase 85A8.;Transcript_evidence=AK066301 (DDBJ%2C Best hit);ORF_evidence=B6EWX9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J013059M20;Expression=AK066301;TENOR=Os02t0755500-01;KEGG=Os02t0755500-01
Chr02	irgsp1_rep	five_prime_UTR	31789013	31789031	.	-	.	Parent=Os02t0755500-01
Chr02	irgsp1_rep	CDS	31788499	31789012	.	-	0	Parent=Os02t0755500-01
Chr02	irgsp1_rep	CDS	31787463	31788409	.	-	2	Parent=Os02t0755500-01
Chr02	irgsp1_rep	three_prime_UTR	31787348	31787462	.	-	.	Parent=Os02t0755500-01
Chr02	irgsp1_rep	mRNA	31791942	31793801	.	-	.	ID=Os02t0755600-01;Name=Os02t0755600-01;Locus_id=Os02g0755600;CGSNL Gene Symbol=UGT85E2;CGSNL Gene Name=UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 85E2;Oryzabase Gene Name Synonym(s)=UDP-glucose-dependent glycosyltransferase 85E2;Note=UDP-glucuronosyl/UDP-glucosyltransferase domain containing protein.;Transcript_evidence=AK064105 (DDBJ%2C Best hit),AK106639 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=002-101-D08,002-113-E02;Oryzabase=15244;TENOR=Os02t0755600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	31793222	31793801	.	-	0	Parent=Os02t0755600-01
Chr02	irgsp1_rep	CDS	31792086	31793023	.	-	2	Parent=Os02t0755600-01
Chr02	irgsp1_rep	three_prime_UTR	31791942	31792085	.	-	.	Parent=Os02t0755600-01
Chr02	irgsp1_rep	mRNA	31805977	31807800	.	+	.	ID=Os02t0755900-01;Name=Os02t0755900-01;Locus_id=Os02g0755900;Oryzabase Gene Name Synonym(s)=Cytokinin-O-glucosyltransferase2%2C Cytokinin-O-glucosyltransferase 2;Note=UDP-glucuronosyl/UDP-glucosyltransferase domain containing protein.;Transcript_evidence=AK073587 (DDBJ%2C Best hit),AK104985 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J033052B15,002-107-F12;Oryzabase=15245;Expression=AK073587;TENOR=Os02t0755900-01;KEGG=Os02t0755900-01 (EC:2.4.1.17);B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	31805977	31806571	.	+	0	Parent=Os02t0755900-01
Chr02	irgsp1_rep	CDS	31806738	31807678	.	+	2	Parent=Os02t0755900-01
Chr02	irgsp1_rep	three_prime_UTR	31807679	31807800	.	+	.	Parent=Os02t0755900-01
Chr02	irgsp1_rep	mRNA	31812986	31813171	.	-	.	ID=Os02t0756032-00;Name=Os02t0756032-00;Locus_id=Os02g0756032;Note=Hypothetical conserved gene.;Transcript_evidence=EU943442 (DDBJ);ORF_evidence=B6TW49 (UniProt);TENOR=Os02t0756032-00;KEGG=Os02t0756032-00
Chr02	irgsp1_rep	five_prime_UTR	31813123	31813171	.	-	.	Parent=Os02t0756032-00
Chr02	irgsp1_rep	CDS	31813009	31813122	.	-	0	Parent=Os02t0756032-00
Chr02	irgsp1_rep	three_prime_UTR	31812986	31813008	.	-	.	Parent=Os02t0756032-00
Chr02	irgsp1_rep	mRNA	31814339	31815609	.	-	.	ID=Os02t0756100-01;Name=Os02t0756100-01;Locus_id=Os02g0756100;Note=Conserved hypothetical protein.;Transcript_evidence=AK060615 (DDBJ%2C Best hit);ORF_evidence=A2X9S2 (UniProt);NIAS_FLcDNA=001-025-H12;Expression=AK060615;TENOR=Os02t0756100-01;KEGG=Os02t0756100-01
Chr02	irgsp1_rep	five_prime_UTR	31815159	31815609	.	-	.	Parent=Os02t0756100-01
Chr02	irgsp1_rep	CDS	31815051	31815158	.	-	0	Parent=Os02t0756100-01
Chr02	irgsp1_rep	CDS	31814725	31814949	.	-	0	Parent=Os02t0756100-01
Chr02	irgsp1_rep	three_prime_UTR	31814339	31814724	.	-	.	Parent=Os02t0756100-01
Chr02	irgsp1_rep	mRNA	31824134	31825261	.	-	.	ID=Os02t0756200-01;Name=Os02t0756200-01;Locus_id=Os02g0756200;Note=Similar to Phi-1-like phosphate-induced protein.;Transcript_evidence=AK119695 (DDBJ%2C Best hit);ORF_evidence=B6SN51 (UniProt);InterPro=Phosphate-induced protein 1 (IPR006766);NIAS_FLcDNA=002-157-C06;Expression=AK119695;TENOR=Os02t0756200-01;KEGG=Os02t0756200-01
Chr02	irgsp1_rep	five_prime_UTR	31825156	31825261	.	-	.	Parent=Os02t0756200-01
Chr02	irgsp1_rep	CDS	31824283	31825155	.	-	0	Parent=Os02t0756200-01
Chr02	irgsp1_rep	CDS	31824229	31824264	.	-	0	Parent=Os02t0756200-01
Chr02	irgsp1_rep	three_prime_UTR	31824134	31824228	.	-	.	Parent=Os02t0756200-01
Chr02	irgsp1_rep	mRNA	31824134	31825261	.	-	.	ID=Os02t0756200-02;Name=Os02t0756200-02;Locus_id=Os02g0756200;Note=Similar to Phi-1 protein.;Transcript_evidence=AK101655 (DDBJ%2C Best hit),AK063454 (DDBJ%2C Best hit);ORF_evidence=B6SN51 (UniProt);InterPro=Phosphate-induced protein 1 (IPR006766);NIAS_FLcDNA=J033057F02,001-115-G05;TENOR=Os02t0756200-02
Chr02	irgsp1_rep	five_prime_UTR	31825156	31825261	.	-	.	Parent=Os02t0756200-02
Chr02	irgsp1_rep	CDS	31824229	31825155	.	-	0	Parent=Os02t0756200-02
Chr02	irgsp1_rep	three_prime_UTR	31824134	31824228	.	-	.	Parent=Os02t0756200-02
Chr02	irgsp1_rep	mRNA	31835161	31836353	.	-	.	ID=Os02t0756600-01;Name=Os02t0756600-01;Locus_id=Os02g0756600;Note=Similar to Phi-1 protein.;Transcript_evidence=AK062900 (DDBJ%2C Best hit);ORF_evidence=B6SN51 (UniProt);InterPro=Phosphate-induced protein 1 (IPR006766);NIAS_FLcDNA=001-108-F03;Expression=AK062900;TENOR=Os02t0756600-01;KEGG=Os02t0756600-01
Chr02	irgsp1_rep	five_prime_UTR	31836235	31836353	.	-	.	Parent=Os02t0756600-01
Chr02	irgsp1_rep	CDS	31835293	31836234	.	-	0	Parent=Os02t0756600-01
Chr02	irgsp1_rep	three_prime_UTR	31835161	31835292	.	-	.	Parent=Os02t0756600-01
Chr02	irgsp1_rep	mRNA	31840547	31841768	.	-	.	ID=Os02t0756800-01;Name=Os02t0756800-01;Locus_id=Os02g0756800;Note=Phosphate-induced protein 1 conserved region family protein.;Transcript_evidence=AK063605 (DDBJ%2C Best hit);ORF_evidence=B6SN51 (UniProt);InterPro=Phosphate-induced protein 1 (IPR006766);NIAS_FLcDNA=001-118-C09;Expression=AK063605;TENOR=Os02t0756800-01;KEGG=Os02t0756800-01
Chr02	irgsp1_rep	five_prime_UTR	31841695	31841768	.	-	.	Parent=Os02t0756800-01
Chr02	irgsp1_rep	CDS	31840708	31841694	.	-	0	Parent=Os02t0756800-01
Chr02	irgsp1_rep	three_prime_UTR	31840547	31840707	.	-	.	Parent=Os02t0756800-01
Chr02	irgsp1_rep	mRNA	31840696	31841847	.	+	.	ID=Os02t0756850-01;Name=Os02t0756850-01;Locus_id=Os02g0756850;Note=Hypothetical protein.;Transcript_evidence=AK241626 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065187G04;TENOR=Os02t0756850-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	31840696	31841149	.	+	.	Parent=Os02t0756850-01
Chr02	irgsp1_rep	CDS	31841150	31841704	.	+	0	Parent=Os02t0756850-01
Chr02	irgsp1_rep	three_prime_UTR	31841705	31841847	.	+	.	Parent=Os02t0756850-01
Chr02	irgsp1_rep	mRNA	31851463	31852644	.	+	.	ID=Os02t0757100-01;Name=Os02t0757100-01;Locus_id=Os02g0757100;CGSNL Gene Symbol=PHI1;CGSNL Gene Name=PHOSPHATE-INDUCED PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsPHI-1%2C PHI-1;Oryzabase Gene Name Synonym(s)=phosphate-induced protein 1;Note=Similar to Phi-1 protein.;Transcript_evidence=AK070419 (DDBJ%2C Best hit);ORF_evidence=NP_001149436.1 (RefSeq);InterPro=Phosphate-induced protein 1 (IPR006766);NIAS_FLcDNA=J023049J22;Oryzabase=16708;Expression=AK070419;TENOR=Os02t0757100-01;KEGG=Os02t0757100-01
Chr02	irgsp1_rep	five_prime_UTR	31851463	31851524	.	+	.	Parent=Os02t0757100-01
Chr02	irgsp1_rep	CDS	31851525	31852460	.	+	0	Parent=Os02t0757100-01
Chr02	irgsp1_rep	three_prime_UTR	31852461	31852644	.	+	.	Parent=Os02t0757100-01
Chr02	irgsp1_rep	mRNA	31853050	31853125	.	+	.	ID=Os02t0757250-00;Name=Os02t0757250-00;Locus_id=Os02g0757250;Note=Non-protein coding transcript.;Transcript_evidence=EU943375 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0757250-00
Chr02	irgsp1_rep	exon	31853050	31853125	.	+	.	Parent=Os02t0757250-00
Chr02	irgsp1_rep	mRNA	31864854	31865429	.	-	.	ID=Os02t0757400-00;Name=Os02t0757400-00;Locus_id=Os02g0757400;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Oligopeptide transporter domain containing protein.;Transcript_evidence=AK374743 (DDBJ);ORF_evidence=A3ABJ1 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109);Oryzabase=23644;TENOR=Os02t0757400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	31864920	31865429	.	-	0	Parent=Os02t0757400-00
Chr02	irgsp1_rep	three_prime_UTR	31864854	31864919	.	-	.	Parent=Os02t0757400-00
Chr02	irgsp1_rep	mRNA	31908947	31911623	.	+	.	ID=Os02t0757700-01;Name=Os02t0757700-01;Locus_id=Os02g0757700;Oryzabase Gene Symbol Synonym(s)=OsFbox110%2C Os_F0551;Oryzabase Gene Name Synonym(s)=F-box protein 110;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK103417 (DDBJ%2C Best hit);ORF_evidence=B6T3M0 (UniProt);NIAS_FLcDNA=J033128J01;Oryzabase=16901;Expression=AK103417;TENOR=Os02t0757700-01;KEGG=Os02t0757700-01
Chr02	irgsp1_rep	five_prime_UTR	31908947	31909163	.	+	.	Parent=Os02t0757700-01
Chr02	irgsp1_rep	five_prime_UTR	31909255	31909356	.	+	.	Parent=Os02t0757700-01
Chr02	irgsp1_rep	five_prime_UTR	31909553	31909575	.	+	.	Parent=Os02t0757700-01
Chr02	irgsp1_rep	CDS	31909576	31909892	.	+	0	Parent=Os02t0757700-01
Chr02	irgsp1_rep	CDS	31910727	31911384	.	+	1	Parent=Os02t0757700-01
Chr02	irgsp1_rep	three_prime_UTR	31911385	31911623	.	+	.	Parent=Os02t0757700-01
Chr02	irgsp1_rep	mRNA	31910498	31911652	.	+	.	ID=Os02t0757700-02;Name=Os02t0757700-02;Locus_id=Os02g0757700;Oryzabase Gene Symbol Synonym(s)=OsFbox110%2C Os_F0551;Oryzabase Gene Name Synonym(s)=F-box protein 110;Note=Similar to Ubiquitin-protein ligase.;Transcript_evidence=AK069370 (DDBJ%2C Best hit);ORF_evidence=B6T3M0 (UniProt);NIAS_FLcDNA=J023012P08;Oryzabase=16901;Expression=AK069370;TENOR=Os02t0757700-02;KEGG=Os02t0757700-02
Chr02	irgsp1_rep	five_prime_UTR	31910498	31910499	.	+	.	Parent=Os02t0757700-02
Chr02	irgsp1_rep	CDS	31910500	31910588	.	+	0	Parent=Os02t0757700-02
Chr02	irgsp1_rep	CDS	31910727	31911384	.	+	1	Parent=Os02t0757700-02
Chr02	irgsp1_rep	three_prime_UTR	31911385	31911652	.	+	.	Parent=Os02t0757700-02
Chr02	irgsp1_rep	mRNA	31910611	31911501	.	-	.	ID=Os02t0757800-01;Name=Os02t0757800-01;Locus_id=Os02g0757800;Note=Hypothetical protein.;Transcript_evidence=AK107806 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-133-E08;Expression=AK107806;TENOR=Os02t0757800-01;KEGG=Os02t0757800-01
Chr02	irgsp1_rep	five_prime_UTR	31910979	31911501	.	-	.	Parent=Os02t0757800-01
Chr02	irgsp1_rep	CDS	31910682	31910978	.	-	0	Parent=Os02t0757800-01
Chr02	irgsp1_rep	three_prime_UTR	31910611	31910681	.	-	.	Parent=Os02t0757800-01
Chr02	irgsp1_rep	mRNA	31916115	31920601	.	-	.	ID=Os02t0757900-01;Name=Os02t0757900-01;Locus_id=Os02g0757900;CGSNL Gene Symbol=PABN1;CGSNL Gene Name=POLY (A) BINDING PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsPABN1;Oryzabase Gene Name Synonym(s)=poly (A) binding protein 1;Note=Similar to Poly(A)-binding protein II-like.;Transcript_evidence=AK061269 (DDBJ%2C Best hit);ORF_evidence=B4FHB3 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=006-212-D06;Oryzabase=22837;Expression=AK061269;TENOR=Os02t0757900-01;KEGG=Os02t0757900-01
Chr02	irgsp1_rep	five_prime_UTR	31920523	31920601	.	-	.	Parent=Os02t0757900-01
Chr02	irgsp1_rep	CDS	31920418	31920522	.	-	0	Parent=Os02t0757900-01
Chr02	irgsp1_rep	CDS	31920227	31920326	.	-	0	Parent=Os02t0757900-01
Chr02	irgsp1_rep	CDS	31919196	31919266	.	-	2	Parent=Os02t0757900-01
Chr02	irgsp1_rep	CDS	31916835	31917026	.	-	0	Parent=Os02t0757900-01
Chr02	irgsp1_rep	CDS	31916603	31916724	.	-	0	Parent=Os02t0757900-01
Chr02	irgsp1_rep	CDS	31916472	31916520	.	-	1	Parent=Os02t0757900-01
Chr02	irgsp1_rep	three_prime_UTR	31916115	31916471	.	-	.	Parent=Os02t0757900-01
Chr02	irgsp1_rep	mRNA	31916205	31920566	.	-	.	ID=Os02t0757900-02;Name=Os02t0757900-02;Locus_id=Os02g0757900;CGSNL Gene Symbol=PABN1;CGSNL Gene Name=POLY (A) BINDING PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsPABN1;Oryzabase Gene Name Synonym(s)=poly (A) binding protein 1;Note=Similar to Polyadenylate-binding protein 2.;Transcript_evidence=AK071146 (DDBJ%2C Best hit);ORF_evidence=B4FHB3 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023081D16;Oryzabase=22837;Expression=AK071146;TENOR=Os02t0757900-02;KEGG=Os02t0757900-02
Chr02	irgsp1_rep	five_prime_UTR	31920523	31920566	.	-	.	Parent=Os02t0757900-02
Chr02	irgsp1_rep	CDS	31920418	31920522	.	-	0	Parent=Os02t0757900-02
Chr02	irgsp1_rep	CDS	31920215	31920326	.	-	0	Parent=Os02t0757900-02
Chr02	irgsp1_rep	CDS	31919196	31919266	.	-	2	Parent=Os02t0757900-02
Chr02	irgsp1_rep	CDS	31916835	31917026	.	-	0	Parent=Os02t0757900-02
Chr02	irgsp1_rep	CDS	31916603	31916724	.	-	0	Parent=Os02t0757900-02
Chr02	irgsp1_rep	CDS	31916472	31916520	.	-	1	Parent=Os02t0757900-02
Chr02	irgsp1_rep	three_prime_UTR	31916205	31916471	.	-	.	Parent=Os02t0757900-02
Chr02	irgsp1_rep	mRNA	31920854	31922068	.	+	.	ID=Os02t0758000-01;Name=Os02t0758000-01;Locus_id=Os02g0758000;CGSNL Gene Symbol=HSP24.1;CGSNL Gene Name=24.1 KDA CLASS I HEAT SHOCK PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsHsp24.1%2C OsHSP24.1;Oryzabase Gene Name Synonym(s)=24.1 kDa heat shock protein%2C 24.1-kD heat shock protein%2C heat shock 22 kDa protein;Note=Similar to Low molecular weight heat shock protein precursor (Mitochondrial small heat shock protein 22).;Transcript_evidence=AK105464 (DDBJ%2C Best hit),AK064389 (DDBJ%2C Best hit),AK074003 (DDBJ%2C Best hit);ORF_evidence=E5D3K1 (UniProt);InterPro=Heat shock protein Hsp20 (IPR002068),HSP20-like chaperone (IPR008978);NIAS_FLcDNA=001-126-A02,002-108-F07,J033076P21;Oryzabase=11893;TENOR=Os02t0758000-01
Chr02	irgsp1_rep	five_prime_UTR	31920854	31920920	.	+	.	Parent=Os02t0758000-01
Chr02	irgsp1_rep	CDS	31920921	31921167	.	+	0	Parent=Os02t0758000-01
Chr02	irgsp1_rep	CDS	31921273	31921688	.	+	2	Parent=Os02t0758000-01
Chr02	irgsp1_rep	three_prime_UTR	31921689	31922068	.	+	.	Parent=Os02t0758000-01
Chr02	irgsp1_rep	mRNA	31923814	31930111	.	+	.	ID=Os02t0758100-01;Name=Os02t0758100-01;Locus_id=Os02g0758100;Note=Similar to LMBR1 integral membrane family protein.;Transcript_evidence=AK064259 (DDBJ%2C Best hit),AK068256 (DDBJ%2C Best hit);ORF_evidence=XP_002864951.1 (RefSeq);InterPro=LMBR1-like membrane protein (IPR006876);NIAS_FLcDNA=002-105-D03,J013147A18;TENOR=Os02t0758100-01
Chr02	irgsp1_rep	five_prime_UTR	31923814	31924097	.	+	.	Parent=Os02t0758100-01
Chr02	irgsp1_rep	CDS	31924098	31924265	.	+	0	Parent=Os02t0758100-01
Chr02	irgsp1_rep	CDS	31924922	31924998	.	+	0	Parent=Os02t0758100-01
Chr02	irgsp1_rep	CDS	31925676	31925834	.	+	1	Parent=Os02t0758100-01
Chr02	irgsp1_rep	CDS	31926066	31926279	.	+	1	Parent=Os02t0758100-01
Chr02	irgsp1_rep	CDS	31926356	31926442	.	+	0	Parent=Os02t0758100-01
Chr02	irgsp1_rep	CDS	31926529	31926668	.	+	0	Parent=Os02t0758100-01
Chr02	irgsp1_rep	CDS	31926887	31926967	.	+	1	Parent=Os02t0758100-01
Chr02	irgsp1_rep	CDS	31927455	31927519	.	+	1	Parent=Os02t0758100-01
Chr02	irgsp1_rep	CDS	31927726	31927901	.	+	2	Parent=Os02t0758100-01
Chr02	irgsp1_rep	CDS	31928719	31928849	.	+	0	Parent=Os02t0758100-01
Chr02	irgsp1_rep	CDS	31928945	31929032	.	+	1	Parent=Os02t0758100-01
Chr02	irgsp1_rep	CDS	31929178	31929391	.	+	0	Parent=Os02t0758100-01
Chr02	irgsp1_rep	CDS	31929713	31929819	.	+	2	Parent=Os02t0758100-01
Chr02	irgsp1_rep	CDS	31929963	31930111	.	+	0	Parent=Os02t0758100-01
Chr02	irgsp1_rep	mRNA	31932285	31933316	.	-	.	ID=Os02t0758200-01;Name=Os02t0758200-01;Locus_id=Os02g0758200;Note=Conserved hypothetical protein.;Transcript_evidence=AK111266 (DDBJ%2C Best hit);ORF_evidence=A3ABJ7 (UniProt);NIAS_FLcDNA=002-180-F07;Expression=AK111266;TENOR=Os02t0758200-01;KEGG=Os02t0758200-01
Chr02	irgsp1_rep	five_prime_UTR	31933236	31933316	.	-	.	Parent=Os02t0758200-01
Chr02	irgsp1_rep	CDS	31932675	31933235	.	-	0	Parent=Os02t0758200-01
Chr02	irgsp1_rep	three_prime_UTR	31932285	31932674	.	-	.	Parent=Os02t0758200-01
Chr02	irgsp1_rep	mRNA	31951933	31953098	.	-	.	ID=Os02t0758800-01;Name=Os02t0758800-01;Locus_id=Os02g0758800;CGSNL Gene Symbol=UCL6;CGSNL Gene Name=UCLACYANIN-LIKE PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsUCL6;Oryzabase Gene Name Synonym(s)=uclacyanin-like protein 6;Note=Cupredoxin domain containing protein.;Transcript_evidence=AK071537 (DDBJ%2C Best hit);ORF_evidence=NP_001152236.1 (RefSeq);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);NIAS_FLcDNA=J023100A12;Oryzabase=9755;Expression=AK071537;TENOR=Os02t0758800-01;KEGG=Os02t0758800-01
Chr02	irgsp1_rep	five_prime_UTR	31952921	31953098	.	-	.	Parent=Os02t0758800-01
Chr02	irgsp1_rep	CDS	31952749	31952920	.	-	0	Parent=Os02t0758800-01
Chr02	irgsp1_rep	CDS	31952065	31952633	.	-	2	Parent=Os02t0758800-01
Chr02	irgsp1_rep	three_prime_UTR	31951933	31952064	.	-	.	Parent=Os02t0758800-01
Chr02	irgsp1_rep	mRNA	31958975	31959951	.	-	.	ID=Os02t0759000-01;Name=Os02t0759000-01;Locus_id=Os02g0759000;Oryzabase Gene Symbol Synonym(s)=OsbHLH048;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 048;Note=Similar to DNA binding protein.;Transcript_evidence=AK107898 (DDBJ%2C Best hit);ORF_evidence=B6SGV5 (UniProt);NIAS_FLcDNA=002-134-F05;Oryzabase=15339;Expression=AK107898;TENOR=Os02t0759000-01;KEGG=Os02t0759000-01
Chr02	irgsp1_rep	five_prime_UTR	31959951	31959951	.	-	.	Parent=Os02t0759000-01
Chr02	irgsp1_rep	CDS	31959585	31959950	.	-	0	Parent=Os02t0759000-01
Chr02	irgsp1_rep	CDS	31959228	31959320	.	-	0	Parent=Os02t0759000-01
Chr02	irgsp1_rep	three_prime_UTR	31958975	31959227	.	-	.	Parent=Os02t0759000-01
Chr02	irgsp1_rep	mRNA	31959583	31959938	.	+	.	ID=Os02t0759200-00;Name=Os02t0759200-00;Locus_id=Os02g0759200;Note=Hypothetical protein.;Transcript_evidence=EU948983 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0759200-00
Chr02	irgsp1_rep	five_prime_UTR	31959583	31959611	.	+	.	Parent=Os02t0759200-00
Chr02	irgsp1_rep	CDS	31959612	31959920	.	+	0	Parent=Os02t0759200-00
Chr02	irgsp1_rep	three_prime_UTR	31959921	31959938	.	+	.	Parent=Os02t0759200-00
Chr02	irgsp1_rep	mRNA	31967805	31969537	.	+	.	ID=Os02t0759400-01;Name=Os02t0759400-01;Locus_id=Os02g0759400;Oryzabase Gene Symbol Synonym(s)=OsRING-1;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK067456 (DDBJ%2C Best hit);ORF_evidence=Q6Z7U3 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J013107I10;Oryzabase=15758;Expression=AK067456;TENOR=Os02t0759400-01;KEGG=Os02t0759400-01
Chr02	irgsp1_rep	five_prime_UTR	31967805	31967855	.	+	.	Parent=Os02t0759400-01
Chr02	irgsp1_rep	CDS	31967856	31969169	.	+	0	Parent=Os02t0759400-01
Chr02	irgsp1_rep	three_prime_UTR	31969170	31969537	.	+	.	Parent=Os02t0759400-01
Chr02	irgsp1_rep	mRNA	31975603	31978222	.	+	.	ID=Os02t0759500-01;Name=Os02t0759500-01;Locus_id=Os02g0759500;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK288445 (DDBJ%2C Best hit);ORF_evidence=B6UCR5 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J090034L04;TENOR=Os02t0759500-01;KEGG=Os02t0759500-01
Chr02	irgsp1_rep	five_prime_UTR	31975603	31975747	.	+	.	Parent=Os02t0759500-01
Chr02	irgsp1_rep	CDS	31975748	31977415	.	+	0	Parent=Os02t0759500-01
Chr02	irgsp1_rep	three_prime_UTR	31977416	31978222	.	+	.	Parent=Os02t0759500-01
Chr02	irgsp1_rep	mRNA	31975642	31977910	.	+	.	ID=Os02t0759500-02;Name=Os02t0759500-02;Locus_id=Os02g0759500;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK072404 (DDBJ%2C Best hit);ORF_evidence=B6UCR5 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J023077D13;Expression=AK072404;TENOR=Os02t0759500-02;KEGG=Os02t0759500-02
Chr02	irgsp1_rep	five_prime_UTR	31975642	31975747	.	+	.	Parent=Os02t0759500-02
Chr02	irgsp1_rep	CDS	31975748	31977415	.	+	0	Parent=Os02t0759500-02
Chr02	irgsp1_rep	three_prime_UTR	31977416	31977910	.	+	.	Parent=Os02t0759500-02
Chr02	irgsp1_rep	mRNA	31975706	31977493	.	+	.	ID=Os02t0759500-03;Name=Os02t0759500-03;Locus_id=Os02g0759500;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK110954 (DDBJ%2C Best hit);ORF_evidence=B6UCR5 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-174-A04;Expression=AK110954;TENOR=Os02t0759500-03;KEGG=Os02t0759500-03
Chr02	irgsp1_rep	five_prime_UTR	31975706	31975747	.	+	.	Parent=Os02t0759500-03
Chr02	irgsp1_rep	CDS	31975748	31977415	.	+	0	Parent=Os02t0759500-03
Chr02	irgsp1_rep	three_prime_UTR	31977416	31977493	.	+	.	Parent=Os02t0759500-03
Chr02	irgsp1_rep	mRNA	31986013	31989154	.	-	.	ID=Os02t0759600-00;Name=Os02t0759600-00;Locus_id=Os02g0759600;Note=Hypothetical protein.;Transcript_evidence=tplb0032b19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0759600-00
Chr02	irgsp1_rep	five_prime_UTR	31988057	31989154	.	-	.	Parent=Os02t0759600-00
Chr02	irgsp1_rep	five_prime_UTR	31987411	31987930	.	-	.	Parent=Os02t0759600-00
Chr02	irgsp1_rep	five_prime_UTR	31986537	31986853	.	-	.	Parent=Os02t0759600-00
Chr02	irgsp1_rep	CDS	31986120	31986536	.	-	0	Parent=Os02t0759600-00
Chr02	irgsp1_rep	three_prime_UTR	31986013	31986119	.	-	.	Parent=Os02t0759600-00
Chr02	irgsp1_rep	mRNA	31985954	31988929	.	+	.	ID=Os02t0759700-01;Name=Os02t0759700-01;Locus_id=Os02g0759700;RAP-DB Gene Symbol Synonym(s)=OsAFB4;RAP-DB Gene Name Synonym(s)=AUXIN SIGNALING F-BOX 4;Oryzabase Gene Symbol Synonym(s)=Os_F0767%2C OsTIR1%2C TIR1;Note=Auxin receptor%2C Plant growth and development%2C "Resistance to herbicide picloram and 2%2C4-D";Transcript_evidence=AK100506,AK111627,AK111900,Inferred from literature;ORF_evidence=Q6K8E2;InterPro=Leucine-rich repeat domain superfamily (IPR032675),COI1%2C F-box (IPR041567),Transport inhibitor response 1 domain (IPR041101),Leucine-rich repeat%2C cysteine-containing subtype (IPR006553);NIAS_FLcDNA=J023099L12,J013115M15,J023038B16;Manual Curation=November 4%2C 2020;Literature_PMID=33135782;Oryzabase=17490;Expression=AK100506;TENOR=Os02t0759700-01;KEGG=Os02t0759700-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=nucleus (GO:0005634),cytoplasm (GO:0005737)
Chr02	irgsp1_rep	five_prime_UTR	31985954	31986123	.	+	.	Parent=Os02t0759700-01
Chr02	irgsp1_rep	CDS	31986124	31986854	.	+	0	Parent=Os02t0759700-01
Chr02	irgsp1_rep	CDS	31987412	31987922	.	+	1	Parent=Os02t0759700-01
Chr02	irgsp1_rep	CDS	31988046	31988807	.	+	0	Parent=Os02t0759700-01
Chr02	irgsp1_rep	three_prime_UTR	31988808	31988929	.	+	.	Parent=Os02t0759700-01
Chr02	irgsp1_rep	mRNA	31986854	31988885	.	+	.	ID=Os02t0759700-02;Name=Os02t0759700-02;Locus_id=Os02g0759700;Oryzabase Gene Symbol Synonym(s)=Os_F0767%2C OsTIR1%2C TIR1;Note=Similar to f-box family protein.;Transcript_evidence=AK111630 (DDBJ%2C Best hit);ORF_evidence=XP_002302328.1 (RefSeq);InterPro=Leucine-rich repeat%2C cysteine-containing subtype (IPR006553);NIAS_FLcDNA=J013121D06;Oryzabase=17490;Expression=AK111630;TENOR=Os02t0759700-02;KEGG=Os02t0759700-02
Chr02	irgsp1_rep	five_prime_UTR	31986854	31987373	.	+	.	Parent=Os02t0759700-02
Chr02	irgsp1_rep	CDS	31987374	31987922	.	+	0	Parent=Os02t0759700-02
Chr02	irgsp1_rep	CDS	31988046	31988807	.	+	0	Parent=Os02t0759700-02
Chr02	irgsp1_rep	three_prime_UTR	31988808	31988885	.	+	.	Parent=Os02t0759700-02
Chr02	irgsp1_rep	mRNA	31987480	31988896	.	+	.	ID=Os02t0759700-03;Name=Os02t0759700-03;Locus_id=Os02g0759700;Oryzabase Gene Symbol Synonym(s)=Os_F0767%2C OsTIR1%2C TIR1;Note=Similar to f-box family protein.;Transcript_evidence=AK111658 (DDBJ%2C Best hit);ORF_evidence=XP_002302328.1 (RefSeq);InterPro=Leucine-rich repeat%2C cysteine-containing subtype (IPR006553);NIAS_FLcDNA=J013149F16;Oryzabase=17490;Expression=AK111658;TENOR=Os02t0759700-03;KEGG=Os02t0759700-03
Chr02	irgsp1_rep	five_prime_UTR	31987480	31987481	.	+	.	Parent=Os02t0759700-03
Chr02	irgsp1_rep	CDS	31987482	31987922	.	+	0	Parent=Os02t0759700-03
Chr02	irgsp1_rep	CDS	31988046	31988807	.	+	0	Parent=Os02t0759700-03
Chr02	irgsp1_rep	three_prime_UTR	31988808	31988896	.	+	.	Parent=Os02t0759700-03
Chr02	irgsp1_rep	mRNA	31988480	31989420	.	+	.	ID=Os02t0759700-04;Name=Os02t0759700-04;Locus_id=Os02g0759700;Oryzabase Gene Symbol Synonym(s)=Os_F0767%2C OsTIR1%2C TIR1;Note=Similar to f-box family protein.;Transcript_evidence=AK111935 (DDBJ%2C Best hit);ORF_evidence=XP_002306554.1 (RefSeq);NIAS_FLcDNA=001-001-A09;Oryzabase=17490;Expression=AK111935;TENOR=Os02t0759700-04;KEGG=Os02t0759700-04
Chr02	irgsp1_rep	five_prime_UTR	31988480	31988480	.	+	.	Parent=Os02t0759700-04
Chr02	irgsp1_rep	CDS	31988481	31988807	.	+	0	Parent=Os02t0759700-04
Chr02	irgsp1_rep	three_prime_UTR	31988808	31989420	.	+	.	Parent=Os02t0759700-04
Chr02	irgsp1_rep	mRNA	31995344	31997696	.	-	.	ID=Os02t0759800-01;Name=Os02t0759800-01;Locus_id=Os02g0759800;RAP-DB Gene Symbol Synonym(s)=OsSKIPa;RAP-DB Gene Name Synonym(s)=Ski-interacting protein;CGSNL Gene Symbol=SKIPA;CGSNL Gene Name=SKI INTERACTING PROTEIN A;Oryzabase Gene Symbol Synonym(s)=OsSKIPa%2C OsSKIP%2C SKIP;Oryzabase Gene Name Synonym(s)=Ski-interacting protein;Note=Rice homolog of human Ski-interacting protein (SKIP)%2C Positive regulation of cell viability%2C Positive regulation of drought and salt tolerance;Transcript_evidence=AK067153;ORF_evidence=Q6K8D9;GO=Biological Process: mRNA splicing%2C via spliceosome (GO:0000398),Cellular Component: spliceosomal complex (GO:0005681);InterPro=SKI-interacting protein SKIP%2C SNW domain (IPR004015);NIAS_FLcDNA=J013098N03;Manual Curation=May 14%2C 2020;Literature_PMID=19339499;Oryzabase=9922;Expression=AK067153;TENOR=Os02t0759800-01;KEGG=Os02t0759800-01;Subcellular location=nucleus (GO:0005634)
Chr02	irgsp1_rep	five_prime_UTR	31997567	31997696	.	-	.	Parent=Os02t0759800-01
Chr02	irgsp1_rep	CDS	31995743	31997566	.	-	0	Parent=Os02t0759800-01
Chr02	irgsp1_rep	three_prime_UTR	31995344	31995742	.	-	.	Parent=Os02t0759800-01
Chr02	irgsp1_rep	mRNA	31995410	31997065	.	-	.	ID=Os02t0759800-02;Name=Os02t0759800-02;Locus_id=Os02g0759800;CGSNL Gene Symbol=SKIPA;CGSNL Gene Name=SKI INTERACTING PROTEIN A;Oryzabase Gene Symbol Synonym(s)=OsSKIPa%2C OsSKIP%2C SKIP;Oryzabase Gene Name Synonym(s)=Ski-interacting protein;Note=Similar to pre-mRNA-splicing factor prp45.;Transcript_evidence=AK071666 (DDBJ%2C Best hit);ORF_evidence=NP_001152362.1 (RefSeq);GO=Biological Process: nuclear mRNA splicing%2C via spliceosome (GO:0000398),Cellular Component: spliceosomal complex (GO:0005681);InterPro=SKI-interacting protein SKIP%2C SNW domain (IPR004015),SKI-interacting protein%2C SKIP (IPR017862);NIAS_FLcDNA=J023106G20;Oryzabase=9922;TENOR=Os02t0759800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	31996925	31997065	.	-	.	Parent=Os02t0759800-02
Chr02	irgsp1_rep	CDS	31995743	31996924	.	-	0	Parent=Os02t0759800-02
Chr02	irgsp1_rep	three_prime_UTR	31995410	31995742	.	-	.	Parent=Os02t0759800-02
Chr02	irgsp1_rep	mRNA	31999250	32001236	.	+	.	ID=Os02t0759900-01;Name=Os02t0759900-01;Locus_id=Os02g0759900;Note=Similar to threonine endopeptidase.;Transcript_evidence=AK059854 (DDBJ%2C Best hit);ORF_evidence=NP_001152476.1 (RefSeq);NIAS_FLcDNA=006-206-H06;Expression=AK059854;TENOR=Os02t0759900-01;KEGG=Os02t0759900-01
Chr02	irgsp1_rep	five_prime_UTR	31999250	31999320	.	+	.	Parent=Os02t0759900-01
Chr02	irgsp1_rep	CDS	31999321	31999468	.	+	0	Parent=Os02t0759900-01
Chr02	irgsp1_rep	CDS	31999553	31999788	.	+	2	Parent=Os02t0759900-01
Chr02	irgsp1_rep	CDS	32000354	32000458	.	+	0	Parent=Os02t0759900-01
Chr02	irgsp1_rep	CDS	32000729	32000800	.	+	0	Parent=Os02t0759900-01
Chr02	irgsp1_rep	CDS	32000880	32000936	.	+	0	Parent=Os02t0759900-01
Chr02	irgsp1_rep	three_prime_UTR	32000937	32001236	.	+	.	Parent=Os02t0759900-01
Chr02	irgsp1_rep	mRNA	32001621	32004050	.	-	.	ID=Os02t0760000-00;Name=Os02t0760000-00;Locus_id=Os02g0760000;CGSNL Gene Symbol=DJC22;CGSNL Gene Name=DNAJ DOMAIN PROTEIN C22;Oryzabase Gene Symbol Synonym(s)=OsDjC22%2C DjC22;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C22;Note=Similar to chaperone protein dnaJ.;Transcript_evidence=AK368960 (DDBJ);ORF_evidence=B6UF39 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Heat shock protein DnaJ%2C conserved site (IPR018253);Oryzabase=12179;TENOR=Os02t0760000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	32003637	32004050	.	-	0	Parent=Os02t0760000-00
Chr02	irgsp1_rep	CDS	32003303	32003380	.	-	0	Parent=Os02t0760000-00
Chr02	irgsp1_rep	CDS	32003015	32003090	.	-	0	Parent=Os02t0760000-00
Chr02	irgsp1_rep	CDS	32002121	32002194	.	-	2	Parent=Os02t0760000-00
Chr02	irgsp1_rep	CDS	32001950	32002021	.	-	0	Parent=Os02t0760000-00
Chr02	irgsp1_rep	three_prime_UTR	32001621	32001949	.	-	.	Parent=Os02t0760000-00
Chr02	irgsp1_rep	mRNA	32008014	32016901	.	+	.	ID=Os02t0760200-01;Name=Os02t0760200-01;Locus_id=Os02g0760200;Note=Conserved hypothetical protein.;Transcript_evidence=AK101423 (DDBJ%2C Best hit);ORF_evidence=B9F336 (UniProt);NIAS_FLcDNA=J033038D16;TENOR=Os02t0760200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	32008014	32008014	.	+	.	Parent=Os02t0760200-01
Chr02	irgsp1_rep	CDS	32008015	32008203	.	+	0	Parent=Os02t0760200-01
Chr02	irgsp1_rep	CDS	32009054	32009220	.	+	0	Parent=Os02t0760200-01
Chr02	irgsp1_rep	CDS	32009318	32009392	.	+	1	Parent=Os02t0760200-01
Chr02	irgsp1_rep	CDS	32009473	32009607	.	+	1	Parent=Os02t0760200-01
Chr02	irgsp1_rep	CDS	32010131	32010249	.	+	1	Parent=Os02t0760200-01
Chr02	irgsp1_rep	CDS	32010415	32010711	.	+	2	Parent=Os02t0760200-01
Chr02	irgsp1_rep	CDS	32010782	32010869	.	+	2	Parent=Os02t0760200-01
Chr02	irgsp1_rep	CDS	32010974	32011079	.	+	1	Parent=Os02t0760200-01
Chr02	irgsp1_rep	CDS	32011234	32011344	.	+	0	Parent=Os02t0760200-01
Chr02	irgsp1_rep	CDS	32012027	32012190	.	+	0	Parent=Os02t0760200-01
Chr02	irgsp1_rep	CDS	32012744	32012864	.	+	1	Parent=Os02t0760200-01
Chr02	irgsp1_rep	CDS	32013465	32013689	.	+	0	Parent=Os02t0760200-01
Chr02	irgsp1_rep	CDS	32013774	32013964	.	+	0	Parent=Os02t0760200-01
Chr02	irgsp1_rep	CDS	32014165	32014332	.	+	1	Parent=Os02t0760200-01
Chr02	irgsp1_rep	CDS	32014418	32014523	.	+	1	Parent=Os02t0760200-01
Chr02	irgsp1_rep	CDS	32014808	32014945	.	+	0	Parent=Os02t0760200-01
Chr02	irgsp1_rep	CDS	32015040	32015204	.	+	0	Parent=Os02t0760200-01
Chr02	irgsp1_rep	CDS	32015284	32015487	.	+	0	Parent=Os02t0760200-01
Chr02	irgsp1_rep	CDS	32015848	32016042	.	+	0	Parent=Os02t0760200-01
Chr02	irgsp1_rep	CDS	32016110	32016181	.	+	0	Parent=Os02t0760200-01
Chr02	irgsp1_rep	CDS	32016304	32016456	.	+	0	Parent=Os02t0760200-01
Chr02	irgsp1_rep	three_prime_UTR	32016457	32016901	.	+	.	Parent=Os02t0760200-01
Chr02	irgsp1_rep	mRNA	32013879	32016982	.	+	.	ID=Os02t0760200-02;Name=Os02t0760200-02;Locus_id=Os02g0760200;Note=Conserved hypothetical protein.;Transcript_evidence=AK063964 (DDBJ%2C Best hit);ORF_evidence=Q6K8D5 (UniProt);NIAS_FLcDNA=001-124-A02;TENOR=Os02t0760200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	32013879	32013915	.	+	.	Parent=Os02t0760200-02
Chr02	irgsp1_rep	CDS	32013916	32013964	.	+	0	Parent=Os02t0760200-02
Chr02	irgsp1_rep	CDS	32014429	32014523	.	+	2	Parent=Os02t0760200-02
Chr02	irgsp1_rep	CDS	32014808	32014945	.	+	0	Parent=Os02t0760200-02
Chr02	irgsp1_rep	CDS	32015040	32015204	.	+	0	Parent=Os02t0760200-02
Chr02	irgsp1_rep	CDS	32015284	32015487	.	+	0	Parent=Os02t0760200-02
Chr02	irgsp1_rep	CDS	32015848	32016042	.	+	0	Parent=Os02t0760200-02
Chr02	irgsp1_rep	CDS	32016110	32016181	.	+	0	Parent=Os02t0760200-02
Chr02	irgsp1_rep	CDS	32016304	32016456	.	+	0	Parent=Os02t0760200-02
Chr02	irgsp1_rep	three_prime_UTR	32016457	32016982	.	+	.	Parent=Os02t0760200-02
Chr02	irgsp1_rep	mRNA	32017761	32019838	.	-	.	ID=Os02t0760300-01;Name=Os02t0760300-01;Locus_id=Os02g0760300;Oryzabase Gene Symbol Synonym(s)=OsFKBP12%2C FKBP12;Oryzabase Gene Name Synonym(s)=FK506 binding protein 12;Note=Similar to Immunophilin.;Transcript_evidence=AK063850 (DDBJ%2C Best hit),AK121481 (DDBJ%2C Best hit);ORF_evidence=Q5XLE1 (UniProt);NIAS_FLcDNA=001-122-C11,J023149K16;Oryzabase=10024;TENOR=Os02t0760300-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	32019739	32019838	.	-	.	Parent=Os02t0760300-01
Chr02	irgsp1_rep	CDS	32019651	32019738	.	-	0	Parent=Os02t0760300-01
Chr02	irgsp1_rep	CDS	32019311	32019344	.	-	2	Parent=Os02t0760300-01
Chr02	irgsp1_rep	CDS	32019020	32019081	.	-	1	Parent=Os02t0760300-01
Chr02	irgsp1_rep	CDS	32018374	32018426	.	-	2	Parent=Os02t0760300-01
Chr02	irgsp1_rep	CDS	32017952	32018053	.	-	0	Parent=Os02t0760300-01
Chr02	irgsp1_rep	three_prime_UTR	32017761	32017951	.	-	.	Parent=Os02t0760300-01
Chr02	irgsp1_rep	mRNA	32021572	32023129	.	+	.	ID=Os02t0760400-01;Name=Os02t0760400-01;Locus_id=Os02g0760400;Note=Conserved hypothetical protein.;Transcript_evidence=AK069088 (DDBJ%2C Best hit);ORF_evidence=B8AIU3 (UniProt);NIAS_FLcDNA=J023007I17;Expression=AK069088;TENOR=Os02t0760400-01;KEGG=Os02t0760400-01
Chr02	irgsp1_rep	five_prime_UTR	32021572	32021938	.	+	.	Parent=Os02t0760400-01
Chr02	irgsp1_rep	CDS	32021939	32022808	.	+	0	Parent=Os02t0760400-01
Chr02	irgsp1_rep	three_prime_UTR	32022809	32023129	.	+	.	Parent=Os02t0760400-01
Chr02	irgsp1_rep	mRNA	32023322	32027150	.	-	.	ID=Os02t0760500-01;Name=Os02t0760500-01;Locus_id=Os02g0760500;Note=Similar to ER6 protein (Fragment).;Transcript_evidence=AK062958 (DDBJ%2C Best hit);ORF_evidence=NP_001148900.1 (RefSeq);GO=Biological Process: response to stress (GO:0006950);InterPro=Universal stress protein A (IPR006015),UspA (IPR006016),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=001-109-D03;Expression=AK062958;TENOR=Os02t0760500-01;KEGG=Os02t0760500-01
Chr02	irgsp1_rep	five_prime_UTR	32027000	32027150	.	-	.	Parent=Os02t0760500-01
Chr02	irgsp1_rep	CDS	32026810	32026999	.	-	0	Parent=Os02t0760500-01
Chr02	irgsp1_rep	CDS	32026568	32026671	.	-	2	Parent=Os02t0760500-01
Chr02	irgsp1_rep	CDS	32026361	32026479	.	-	0	Parent=Os02t0760500-01
Chr02	irgsp1_rep	CDS	32023670	32023745	.	-	1	Parent=Os02t0760500-01
Chr02	irgsp1_rep	three_prime_UTR	32023322	32023669	.	-	.	Parent=Os02t0760500-01
Chr02	irgsp1_rep	mRNA	32024327	32024914	.	+	.	ID=Os02t0760600-01;Name=Os02t0760600-01;Locus_id=Os02g0760600;Note=BTB domain containing protein.;Transcript_evidence=AK107943 (DDBJ%2C Best hit);ORF_evidence=A2X9V0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069);NIAS_FLcDNA=002-135-B03;Expression=AK107943;TENOR=Os02t0760600-01;KEGG=Os02t0760600-01
Chr02	irgsp1_rep	five_prime_UTR	32024327	32024360	.	+	.	Parent=Os02t0760600-01
Chr02	irgsp1_rep	CDS	32024361	32024750	.	+	0	Parent=Os02t0760600-01
Chr02	irgsp1_rep	three_prime_UTR	32024751	32024914	.	+	.	Parent=Os02t0760600-01
Chr02	irgsp1_rep	mRNA	32038935	32044840	.	+	.	ID=Os02t0761000-01;Name=Os02t0761000-01;Locus_id=Os02g0761000;CGSNL Gene Symbol=MADS22;CGSNL Gene Name=MADS BOX GENE 22;Oryzabase Gene Symbol Synonym(s)=OsMADS22%2C RMD1%2C DLN68%2C OsDLN68;Oryzabase Gene Name Synonym(s)=MADS box gene22%2C MADS-box transcription factor 22%2C STMADS11-like%2C DLN repressor 68%2C DLN motif protein 68;Note=Similar to Transcription factor MADS55.;Transcript_evidence=AK070121 (DDBJ%2C Best hit);ORF_evidence=D3U2H0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box (IPR002100),Transcription factor%2C K-box (IPR002487);NIAS_FLcDNA=J023041N10;Oryzabase=3089;Expression=AK070121;TENOR=Os02t0761000-01;KEGG=Os02t0761000-01
Chr02	irgsp1_rep	five_prime_UTR	32038935	32039176	.	+	.	Parent=Os02t0761000-01
Chr02	irgsp1_rep	CDS	32039177	32039358	.	+	0	Parent=Os02t0761000-01
Chr02	irgsp1_rep	CDS	32041561	32041639	.	+	1	Parent=Os02t0761000-01
Chr02	irgsp1_rep	CDS	32042315	32042376	.	+	0	Parent=Os02t0761000-01
Chr02	irgsp1_rep	CDS	32042500	32042599	.	+	1	Parent=Os02t0761000-01
Chr02	irgsp1_rep	CDS	32042676	32042717	.	+	0	Parent=Os02t0761000-01
Chr02	irgsp1_rep	CDS	32043564	32043605	.	+	0	Parent=Os02t0761000-01
Chr02	irgsp1_rep	CDS	32043696	32043850	.	+	0	Parent=Os02t0761000-01
Chr02	irgsp1_rep	CDS	32044501	32044525	.	+	1	Parent=Os02t0761000-01
Chr02	irgsp1_rep	three_prime_UTR	32044526	32044840	.	+	.	Parent=Os02t0761000-01
Chr02	irgsp1_rep	mRNA	32047766	32052300	.	+	.	ID=Os02t0761100-01;Name=Os02t0761100-01;Locus_id=Os02g0761100;CGSNL Gene Symbol=CYP40B;CGSNL Gene Name=CYCLOPHILIN 40B;Oryzabase Gene Symbol Synonym(s)=OsCYP40b%2C OsCYP-8%2C OsCYP40-2;Oryzabase Gene Name Synonym(s)=cyclophilin 40b%2C cyclophilin 8;Note=Similar to Cyclophilin-40 (Expressed protein).;Transcript_evidence=AK070404 (DDBJ%2C Best hit);ORF_evidence=NP_565381.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide TPR-1 (IPR001440),Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type (IPR002130),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Cyclophilin-like (IPR015891),Tetratricopeptide repeat (IPR019734),Elongated TPR repeat-containing domain (IPR023114);NIAS_FLcDNA=J023054M07;Oryzabase=10071;Expression=AK070404;TENOR=Os02t0761100-01;KEGG=Os02t0761100-01 (EC:5.2.1.8)
Chr02	irgsp1_rep	five_prime_UTR	32047766	32047925	.	+	.	Parent=Os02t0761100-01
Chr02	irgsp1_rep	CDS	32047926	32048183	.	+	0	Parent=Os02t0761100-01
Chr02	irgsp1_rep	CDS	32049882	32050382	.	+	0	Parent=Os02t0761100-01
Chr02	irgsp1_rep	CDS	32050555	32050642	.	+	0	Parent=Os02t0761100-01
Chr02	irgsp1_rep	CDS	32050758	32050810	.	+	2	Parent=Os02t0761100-01
Chr02	irgsp1_rep	CDS	32051006	32051110	.	+	0	Parent=Os02t0761100-01
Chr02	irgsp1_rep	CDS	32051393	32051468	.	+	0	Parent=Os02t0761100-01
Chr02	irgsp1_rep	CDS	32051545	32051582	.	+	2	Parent=Os02t0761100-01
Chr02	irgsp1_rep	CDS	32051669	32051749	.	+	0	Parent=Os02t0761100-01
Chr02	irgsp1_rep	CDS	32051860	32051871	.	+	0	Parent=Os02t0761100-01
Chr02	irgsp1_rep	three_prime_UTR	32051872	32051946	.	+	.	Parent=Os02t0761100-01
Chr02	irgsp1_rep	three_prime_UTR	32052027	32052300	.	+	.	Parent=Os02t0761100-01
Chr02	irgsp1_rep	mRNA	32047967	32051752	.	-	.	ID=Os02t0761150-00;Name=Os02t0761150-00;Locus_id=Os02g0761150;Note=Hypothetical protein.;Transcript_evidence=tplb0035a03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0761150-00
Chr02	irgsp1_rep	five_prime_UTR	32051633	32051752	.	-	.	Parent=Os02t0761150-00
Chr02	irgsp1_rep	five_prime_UTR	32051406	32051468	.	-	.	Parent=Os02t0761150-00
Chr02	irgsp1_rep	five_prime_UTR	32050998	32051122	.	-	.	Parent=Os02t0761150-00
Chr02	irgsp1_rep	five_prime_UTR	32050756	32050808	.	-	.	Parent=Os02t0761150-00
Chr02	irgsp1_rep	five_prime_UTR	32050567	32050640	.	-	.	Parent=Os02t0761150-00
Chr02	irgsp1_rep	five_prime_UTR	32050280	32050393	.	-	.	Parent=Os02t0761150-00
Chr02	irgsp1_rep	CDS	32050064	32050279	.	-	0	Parent=Os02t0761150-00
Chr02	irgsp1_rep	three_prime_UTR	32049874	32050063	.	-	.	Parent=Os02t0761150-00
Chr02	irgsp1_rep	three_prime_UTR	32047967	32048176	.	-	.	Parent=Os02t0761150-00
Chr02	irgsp1_rep	mRNA	32052568	32055886	.	-	.	ID=Os02t0761200-01;Name=Os02t0761200-01;Locus_id=Os02g0761200;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK073828 (DDBJ%2C Best hit);ORF_evidence=NP_567944.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033068P04;Expression=AK073828;TENOR=Os02t0761200-01;KEGG=Os02t0761200-01
Chr02	irgsp1_rep	five_prime_UTR	32055848	32055886	.	-	.	Parent=Os02t0761200-01
Chr02	irgsp1_rep	CDS	32055715	32055847	.	-	0	Parent=Os02t0761200-01
Chr02	irgsp1_rep	CDS	32055290	32055601	.	-	2	Parent=Os02t0761200-01
Chr02	irgsp1_rep	CDS	32054505	32054788	.	-	2	Parent=Os02t0761200-01
Chr02	irgsp1_rep	CDS	32053987	32054115	.	-	0	Parent=Os02t0761200-01
Chr02	irgsp1_rep	CDS	32053494	32053616	.	-	0	Parent=Os02t0761200-01
Chr02	irgsp1_rep	CDS	32053293	32053400	.	-	0	Parent=Os02t0761200-01
Chr02	irgsp1_rep	CDS	32053035	32053213	.	-	0	Parent=Os02t0761200-01
Chr02	irgsp1_rep	CDS	32052787	32052910	.	-	1	Parent=Os02t0761200-01
Chr02	irgsp1_rep	three_prime_UTR	32052568	32052786	.	-	.	Parent=Os02t0761200-01
Chr02	irgsp1_rep	mRNA	32058997	32060289	.	-	.	ID=Os02t0761300-00;Name=Os02t0761300-00;Locus_id=Os02g0761300;Note=Protein of unknown function DUF1645 family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001173156.1 (RefSeq);InterPro=Protein of unknown function DUF1645 (IPR012442);TENOR=Os02t0761300-00;KEGG=Os02t0761300-00
Chr02	irgsp1_rep	CDS	32058997	32060289	.	-	0	Parent=Os02t0761300-00
Chr02	irgsp1_rep	mRNA	32068322	32069424	.	+	.	ID=Os02t0761400-01;Name=Os02t0761400-01;Locus_id=Os02g0761400;Note=Similar to ATPREP2.;Transcript_evidence=AK060417 (DDBJ%2C Best hit);ORF_evidence=XP_002894203.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: metal ion binding (GO:0046872);InterPro=Metalloenzyme%2C LuxS/M16 peptidase-like%2C metal-binding (IPR011249);NIAS_FLcDNA=001-010-F01;TENOR=Os02t0761400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	32068322	32068479	.	+	0	Parent=Os02t0761400-01
Chr02	irgsp1_rep	CDS	32068806	32068877	.	+	1	Parent=Os02t0761400-01
Chr02	irgsp1_rep	CDS	32068980	32069121	.	+	1	Parent=Os02t0761400-01
Chr02	irgsp1_rep	three_prime_UTR	32069122	32069424	.	+	.	Parent=Os02t0761400-01
Chr02	irgsp1_rep	mRNA	32069408	32070242	.	-	.	ID=Os02t0761500-01;Name=Os02t0761500-01;Locus_id=Os02g0761500;Note=Conserved hypothetical protein.;Transcript_evidence=AK107813 (DDBJ%2C Best hit);ORF_evidence=A2X9V9 (UniProt);NIAS_FLcDNA=002-133-F04;TENOR=Os02t0761500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	32070241	32070242	.	-	.	Parent=Os02t0761500-01
Chr02	irgsp1_rep	CDS	32069782	32070240	.	-	0	Parent=Os02t0761500-01
Chr02	irgsp1_rep	three_prime_UTR	32069408	32069781	.	-	.	Parent=Os02t0761500-01
Chr02	irgsp1_rep	mRNA	32071208	32080446	.	-	.	ID=Os02t0761600-01;Name=Os02t0761600-01;Locus_id=Os02g0761600;Note=Conserved hypothetical protein.;Transcript_evidence=AK120494 (DDBJ%2C Best hit);ORF_evidence=A2X9W0 (UniProt);NIAS_FLcDNA=J013119O06;Expression=AK120494;TENOR=Os02t0761600-01;KEGG=Os02t0761600-01
Chr02	irgsp1_rep	five_prime_UTR	32080194	32080446	.	-	.	Parent=Os02t0761600-01
Chr02	irgsp1_rep	CDS	32080031	32080193	.	-	0	Parent=Os02t0761600-01
Chr02	irgsp1_rep	CDS	32079843	32079940	.	-	2	Parent=Os02t0761600-01
Chr02	irgsp1_rep	CDS	32079616	32079757	.	-	0	Parent=Os02t0761600-01
Chr02	irgsp1_rep	CDS	32072982	32073077	.	-	2	Parent=Os02t0761600-01
Chr02	irgsp1_rep	CDS	32072753	32072872	.	-	2	Parent=Os02t0761600-01
Chr02	irgsp1_rep	CDS	32072337	32072599	.	-	2	Parent=Os02t0761600-01
Chr02	irgsp1_rep	CDS	32071576	32071686	.	-	0	Parent=Os02t0761600-01
Chr02	irgsp1_rep	three_prime_UTR	32071208	32071575	.	-	.	Parent=Os02t0761600-01
Chr02	irgsp1_rep	mRNA	32081293	32085569	.	-	.	ID=Os02t0761700-01;Name=Os02t0761700-01;Locus_id=Os02g0761700;Note=Peptidase M24 family protein.;Transcript_evidence=AK068344 (DDBJ%2C Best hit);ORF_evidence=A3ABL7 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: cellular process (GO:0009987),Molecular Function: aminopeptidase activity (GO:0004177),Molecular Function: metalloexopeptidase activity (GO:0008235);InterPro=Peptidase M24%2C structural domain (IPR000994),Peptidase M24A%2C methionine aminopeptidase%2C subfamily 1 (IPR002467);NIAS_FLcDNA=J013149L20;Expression=AK068344;TENOR=Os02t0761700-01;KEGG=Os02t0761700-01 (EC:3.4.11.18)
Chr02	irgsp1_rep	five_prime_UTR	32085511	32085569	.	-	.	Parent=Os02t0761700-01
Chr02	irgsp1_rep	CDS	32085414	32085510	.	-	0	Parent=Os02t0761700-01
Chr02	irgsp1_rep	CDS	32085188	32085254	.	-	2	Parent=Os02t0761700-01
Chr02	irgsp1_rep	CDS	32084478	32084706	.	-	1	Parent=Os02t0761700-01
Chr02	irgsp1_rep	CDS	32083889	32084050	.	-	0	Parent=Os02t0761700-01
Chr02	irgsp1_rep	CDS	32083767	32083808	.	-	0	Parent=Os02t0761700-01
Chr02	irgsp1_rep	CDS	32083420	32083491	.	-	0	Parent=Os02t0761700-01
Chr02	irgsp1_rep	CDS	32083122	32083193	.	-	0	Parent=Os02t0761700-01
Chr02	irgsp1_rep	CDS	32082776	32082855	.	-	0	Parent=Os02t0761700-01
Chr02	irgsp1_rep	CDS	32082180	32082277	.	-	1	Parent=Os02t0761700-01
Chr02	irgsp1_rep	CDS	32081925	32081972	.	-	2	Parent=Os02t0761700-01
Chr02	irgsp1_rep	CDS	32081473	32081618	.	-	2	Parent=Os02t0761700-01
Chr02	irgsp1_rep	three_prime_UTR	32081293	32081472	.	-	.	Parent=Os02t0761700-01
Chr02	irgsp1_rep	mRNA	32088131	32090119	.	-	.	ID=Os02t0761900-01;Name=Os02t0761900-01;Locus_id=Os02g0761900;Note=Dimethylmenaquinone methyltransferase family protein.;Transcript_evidence=AK059956 (DDBJ%2C Best hit);ORF_evidence=A6N081 (UniProt);GO=Biological Process: regulation of RNA metabolic process (GO:0051252),Molecular Function: ribonuclease inhibitor activity (GO:0008428);InterPro=Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (IPR005493),Ribonuclease E inhibitor RraA (IPR010203);NIAS_FLcDNA=006-211-D03;Expression=AK059956;TENOR=Os02t0761900-01;KEGG=Os02t0761900-01
Chr02	irgsp1_rep	five_prime_UTR	32089850	32090119	.	-	.	Parent=Os02t0761900-01
Chr02	irgsp1_rep	five_prime_UTR	32088762	32088777	.	-	.	Parent=Os02t0761900-01
Chr02	irgsp1_rep	CDS	32088255	32088761	.	-	0	Parent=Os02t0761900-01
Chr02	irgsp1_rep	three_prime_UTR	32088131	32088254	.	-	.	Parent=Os02t0761900-01
Chr02	irgsp1_rep	mRNA	32088117	32090088	.	-	.	ID=Os02t0761900-02;Name=Os02t0761900-02;Locus_id=Os02g0761900;Note=Dimethylmenaquinone methyltransferase family protein.;Transcript_evidence=AK058782 (DDBJ%2C Best hit);ORF_evidence=A6N081 (UniProt);GO=Biological Process: regulation of RNA metabolic process (GO:0051252),Molecular Function: ribonuclease inhibitor activity (GO:0008428);InterPro=Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (IPR005493),Ribonuclease E inhibitor RraA (IPR010203);NIAS_FLcDNA=001-002-C11;Expression=AK058782;TENOR=Os02t0761900-02;KEGG=Os02t0761900-02
Chr02	irgsp1_rep	five_prime_UTR	32089850	32090088	.	-	.	Parent=Os02t0761900-02
Chr02	irgsp1_rep	five_prime_UTR	32088762	32088774	.	-	.	Parent=Os02t0761900-02
Chr02	irgsp1_rep	CDS	32088255	32088761	.	-	0	Parent=Os02t0761900-02
Chr02	irgsp1_rep	three_prime_UTR	32088117	32088254	.	-	.	Parent=Os02t0761900-02
Chr02	irgsp1_rep	mRNA	32092748	32094628	.	-	.	ID=Os02t0762100-01;Name=Os02t0762100-01;Locus_id=Os02g0762100;Note=Similar to Regulator of ribonuclease-like protein 2.;Transcript_evidence=AK068833 (DDBJ%2C Best hit);ORF_evidence=A6N081 (UniProt);GO=Biological Process: regulation of RNA metabolic process (GO:0051252),Molecular Function: ribonuclease inhibitor activity (GO:0008428);InterPro=Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (IPR005493),Ribonuclease E inhibitor RraA (IPR010203);NIAS_FLcDNA=J013159A13;TENOR=Os02t0762100-01
Chr02	irgsp1_rep	five_prime_UTR	32093387	32094628	.	-	.	Parent=Os02t0762100-01
Chr02	irgsp1_rep	CDS	32092880	32093386	.	-	0	Parent=Os02t0762100-01
Chr02	irgsp1_rep	three_prime_UTR	32092748	32092879	.	-	.	Parent=Os02t0762100-01
Chr02	irgsp1_rep	mRNA	32092748	32093988	.	-	.	ID=Os02t0762100-02;Name=Os02t0762100-02;Locus_id=Os02g0762100;Note=Similar to Regulator of ribonuclease-like protein 2.;Transcript_evidence=AK059923 (DDBJ%2C Best hit);ORF_evidence=D6C5C5 (UniProt);GO=Biological Process: regulation of RNA metabolic process (GO:0051252),Molecular Function: ribonuclease inhibitor activity (GO:0008428);InterPro=Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (IPR005493),Ribonuclease E inhibitor RraA (IPR010203);NIAS_FLcDNA=006-209-H02;TENOR=Os02t0762100-02
Chr02	irgsp1_rep	five_prime_UTR	32093387	32093988	.	-	.	Parent=Os02t0762100-02
Chr02	irgsp1_rep	CDS	32092880	32093386	.	-	0	Parent=Os02t0762100-02
Chr02	irgsp1_rep	three_prime_UTR	32092748	32092879	.	-	.	Parent=Os02t0762100-02
Chr02	irgsp1_rep	mRNA	32095322	32098710	.	-	.	ID=Os02t0762200-01;Name=Os02t0762200-01;Locus_id=Os02g0762200;Note=Zinc finger%2C CCHC-type domain containing protein.;Transcript_evidence=AK103885 (DDBJ%2C Best hit);ORF_evidence=B4FG21 (UniProt);GO=Biological Process: response to DNA damage stimulus (GO:0006974),Biological Process: cell cycle (GO:0007049),Biological Process: replication fork protection (GO:0048478),Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Replication fork protection component Swi3 (IPR012923),Zinc finger%2C CCHC retroviral-type (IPR013084);NIAS_FLcDNA=J033150B14;Expression=AK103885;TENOR=Os02t0762200-01;KEGG=Os02t0762200-01
Chr02	irgsp1_rep	five_prime_UTR	32098649	32098710	.	-	.	Parent=Os02t0762200-01
Chr02	irgsp1_rep	CDS	32098277	32098648	.	-	0	Parent=Os02t0762200-01
Chr02	irgsp1_rep	CDS	32097329	32097451	.	-	0	Parent=Os02t0762200-01
Chr02	irgsp1_rep	CDS	32096119	32096215	.	-	0	Parent=Os02t0762200-01
Chr02	irgsp1_rep	CDS	32095828	32095991	.	-	2	Parent=Os02t0762200-01
Chr02	irgsp1_rep	CDS	32095499	32095717	.	-	0	Parent=Os02t0762200-01
Chr02	irgsp1_rep	three_prime_UTR	32095322	32095498	.	-	.	Parent=Os02t0762200-01
Chr02	irgsp1_rep	mRNA	32099098	32102893	.	-	.	ID=Os02t0762300-01;Name=Os02t0762300-01;Locus_id=Os02g0762300;Note=2-thiocytidine tRNA biosynthesis protein%2C TtcA domain containing protein.;Transcript_evidence=AK106684 (DDBJ%2C Best hit);ORF_evidence=Q6Z6G6 (UniProt);GO=Biological Process: tRNA processing (GO:0008033),Biological Process: tRNA thio-modification (GO:0034227),Cellular Component: cytoplasm (GO:0005737),Molecular Function: tRNA binding (GO:0000049),Molecular Function: ATP binding (GO:0005524);InterPro=tRNA 2-thiolation protein (IPR000541),tRNA(Ile)-lysidine/2-thiocytidine synthase (IPR011063),2-thiocytidine tRNA biosynthesis protein%2C TtcA (IPR012089),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=002-114-B10;Expression=AK106684;TENOR=Os02t0762300-01;KEGG=Os02t0762300-01
Chr02	irgsp1_rep	five_prime_UTR	32102723	32102893	.	-	.	Parent=Os02t0762300-01
Chr02	irgsp1_rep	five_prime_UTR	32101981	32102008	.	-	.	Parent=Os02t0762300-01
Chr02	irgsp1_rep	CDS	32101867	32101980	.	-	0	Parent=Os02t0762300-01
Chr02	irgsp1_rep	CDS	32101555	32101669	.	-	0	Parent=Os02t0762300-01
Chr02	irgsp1_rep	CDS	32101239	32101381	.	-	2	Parent=Os02t0762300-01
Chr02	irgsp1_rep	CDS	32100967	32101086	.	-	0	Parent=Os02t0762300-01
Chr02	irgsp1_rep	CDS	32100774	32100886	.	-	0	Parent=Os02t0762300-01
Chr02	irgsp1_rep	CDS	32100611	32100703	.	-	1	Parent=Os02t0762300-01
Chr02	irgsp1_rep	CDS	32100479	32100519	.	-	1	Parent=Os02t0762300-01
Chr02	irgsp1_rep	CDS	32100199	32100265	.	-	2	Parent=Os02t0762300-01
Chr02	irgsp1_rep	CDS	32099927	32100038	.	-	1	Parent=Os02t0762300-01
Chr02	irgsp1_rep	CDS	32099339	32099512	.	-	0	Parent=Os02t0762300-01
Chr02	irgsp1_rep	three_prime_UTR	32099098	32099338	.	-	.	Parent=Os02t0762300-01
Chr02	irgsp1_rep	mRNA	32111311	32112948	.	+	.	ID=Os02t0762400-01;Name=Os02t0762400-01;Locus_id=Os02g0762400;RAP-DB Gene Symbol Synonym(s)=KRP1%2C OsiICK1%2C Orysa%3BKRP1%2C OrysaICK1%2C Orysa%3BICK1%2C CDKI;RAP-DB Gene Name Synonym(s)=KIP-RELATED PROTEIN 1%2C Cyclin-dependent kinase inhibitor 1%2C KIP-related protein 1%2C inhibitor of cyclin-dependent kinase 1;CGSNL Gene Symbol=KRP1;CGSNL Gene Name=KIP-RELATED PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsiICK1%2C Orysa%3BKRP1%2C OrysaICK1%2C Orysa%3BICK1%2C CDKI%2C OsICK1%2C ICK1;Oryzabase Gene Name Synonym(s)=Cyclin-dependent kinase inhibitor 1%2C KIP-related protein 1%2C inhibitor of cyclin-dependent kinase 1;Note=CDK inhibitor (CKI)%2C Seed development;Transcript_evidence=DQ229362 (Belgium),AK103084;ORF_evidence=Q6Z6G5,B7EU31;GO=Biological Process: cell cycle arrest (GO:0007050),Molecular Function: cyclin-dependent protein serine/threonine kinase inhibitor activity (GO:0004861),Cellular Component: nucleus (GO:0005634);InterPro=Cyclin-dependent kinase inhibitor (IPR003175);NIAS_FLcDNA=J033118G18;Manual Curation=November 30%2C 2009;Literature_PMID=17012406;Oryzabase=7379;Expression=AK103084;TENOR=Os02t0762400-01;KEGG=Os02t0762400-01
Chr02	irgsp1_rep	five_prime_UTR	32111311	32111369	.	+	.	Parent=Os02t0762400-01
Chr02	irgsp1_rep	CDS	32111370	32111801	.	+	0	Parent=Os02t0762400-01
Chr02	irgsp1_rep	CDS	32111902	32111966	.	+	0	Parent=Os02t0762400-01
Chr02	irgsp1_rep	CDS	32112072	32112281	.	+	1	Parent=Os02t0762400-01
Chr02	irgsp1_rep	CDS	32112450	32112531	.	+	1	Parent=Os02t0762400-01
Chr02	irgsp1_rep	three_prime_UTR	32112532	32112948	.	+	.	Parent=Os02t0762400-01
Chr02	irgsp1_rep	mRNA	32119010	32120797	.	-	.	ID=Os02t0762600-01;Name=Os02t0762600-01;Locus_id=Os02g0762600;RAP-DB Gene Symbol Synonym(s)=SGL1;RAP-DB Gene Name Synonym(s)=SG1-LIKE PROTEIN1%2C SG1-LIKE PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=SGL1;Oryzabase Gene Name Synonym(s)=SG1-LIKE PROTEIN1%2C SG1-LIKE PROTEIN 1;Note=SG1 (SHORT GRAIN1)-related protein%2C Brassinosteroid signaling%2C Regulation of seed and panicle development;Transcript_evidence=AK110321;ORF_evidence=Q6Z6G3;NIAS_FLcDNA=002-164-C12,J033135G19;Manual Curation=September 11%2C 2014;Literature_PMID=22209874;Oryzabase=20510;TENOR=Os02t0762600-01;KEGG=Os02t0762600-01
Chr02	irgsp1_rep	five_prime_UTR	32120598	32120797	.	-	.	Parent=Os02t0762600-01
Chr02	irgsp1_rep	CDS	32120145	32120597	.	-	0	Parent=Os02t0762600-01
Chr02	irgsp1_rep	CDS	32120026	32120034	.	-	0	Parent=Os02t0762600-01
Chr02	irgsp1_rep	three_prime_UTR	32119010	32120025	.	-	.	Parent=Os02t0762600-01
Chr02	irgsp1_rep	mRNA	32125904	32134832	.	-	.	ID=Os02t0762800-00;Name=Os02t0762800-00;Locus_id=Os02g0762800;CGSNL Gene Symbol=RAD54;CGSNL Gene Name=DNA REPAIR PROTEIN RAD54;Oryzabase Gene Symbol Synonym(s)=OsRAD54%2C OsRad54;Oryzabase Gene Name Synonym(s)=DNA repair protein RAD54;Note=Similar to ATRAD54/CHR25 (ARABIDOPSIS HOMOLOG OF RAD54)%3B ATP binding / DNA binding / helicase.;Transcript_evidence=AB240577 (DDBJ%2C Best hit);ORF_evidence=NP_188552.3 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524);InterPro=SNF2-related (IPR000330),Helicase%2C C-terminal (IPR001650),DEAD-like helicase (IPR014001);Oryzabase=11618;TENOR=Os02t0762800-00;KEGG=Os02t0762800-00 (EC:3.6.1.-)
Chr02	irgsp1_rep	five_prime_UTR	32134695	32134832	.	-	.	Parent=Os02t0762800-00
Chr02	irgsp1_rep	CDS	32134354	32134694	.	-	0	Parent=Os02t0762800-00
Chr02	irgsp1_rep	CDS	32132767	32133144	.	-	1	Parent=Os02t0762800-00
Chr02	irgsp1_rep	CDS	32132535	32132621	.	-	1	Parent=Os02t0762800-00
Chr02	irgsp1_rep	CDS	32132216	32132456	.	-	1	Parent=Os02t0762800-00
Chr02	irgsp1_rep	CDS	32131982	32132107	.	-	0	Parent=Os02t0762800-00
Chr02	irgsp1_rep	CDS	32131819	32131875	.	-	0	Parent=Os02t0762800-00
Chr02	irgsp1_rep	CDS	32131642	32131728	.	-	0	Parent=Os02t0762800-00
Chr02	irgsp1_rep	CDS	32131359	32131454	.	-	0	Parent=Os02t0762800-00
Chr02	irgsp1_rep	CDS	32131137	32131187	.	-	0	Parent=Os02t0762800-00
Chr02	irgsp1_rep	CDS	32130761	32130835	.	-	0	Parent=Os02t0762800-00
Chr02	irgsp1_rep	CDS	32130585	32130671	.	-	0	Parent=Os02t0762800-00
Chr02	irgsp1_rep	CDS	32129928	32130019	.	-	0	Parent=Os02t0762800-00
Chr02	irgsp1_rep	CDS	32129724	32129856	.	-	1	Parent=Os02t0762800-00
Chr02	irgsp1_rep	CDS	32129283	32129402	.	-	0	Parent=Os02t0762800-00
Chr02	irgsp1_rep	CDS	32129064	32129177	.	-	0	Parent=Os02t0762800-00
Chr02	irgsp1_rep	CDS	32128879	32128962	.	-	0	Parent=Os02t0762800-00
Chr02	irgsp1_rep	CDS	32128696	32128770	.	-	0	Parent=Os02t0762800-00
Chr02	irgsp1_rep	CDS	32128556	32128614	.	-	0	Parent=Os02t0762800-00
Chr02	irgsp1_rep	CDS	32127725	32127917	.	-	1	Parent=Os02t0762800-00
Chr02	irgsp1_rep	CDS	32127095	32127193	.	-	0	Parent=Os02t0762800-00
Chr02	irgsp1_rep	CDS	32125924	32126271	.	-	0	Parent=Os02t0762800-00
Chr02	irgsp1_rep	three_prime_UTR	32125904	32125923	.	-	.	Parent=Os02t0762800-00
Chr02	irgsp1_rep	mRNA	32155213	32156315	.	+	.	ID=Os02t0763000-01;Name=Os02t0763000-01;Locus_id=Os02g0763000;RAP-DB Gene Symbol Synonym(s)=OsCNR1%2C TGW2%2C OsFWL1;RAP-DB Gene Name Synonym(s)=Cell Number Regulator 1%2C FW2.2-like 1;Oryzabase Gene Symbol Synonym(s)=OsFWL1;Oryzabase Gene Name Synonym(s)=FW2.2-like 1;Note=FW2.2-like gene family protein%2C Regulation of grain width and weight;Transcript_evidence=AK241465;ORF_evidence=Q6Z6F9;InterPro=PLAC8 motif-containing protein (IPR006461);NIAS_FLcDNA=J065164J03;Manual Curation=March 16%2C 2020;Literature_PMID=32167575,23793979;Oryzabase=13470;TENOR=Os02t0763000-01;KEGG=Os02t0763000-01;Subcellular location=plasma membrane (GO:0005886)
Chr02	irgsp1_rep	five_prime_UTR	32155213	32155266	.	+	.	Parent=Os02t0763000-01
Chr02	irgsp1_rep	CDS	32155267	32155438	.	+	0	Parent=Os02t0763000-01
Chr02	irgsp1_rep	CDS	32155554	32155625	.	+	2	Parent=Os02t0763000-01
Chr02	irgsp1_rep	CDS	32155728	32155937	.	+	2	Parent=Os02t0763000-01
Chr02	irgsp1_rep	CDS	32156052	32156143	.	+	2	Parent=Os02t0763000-01
Chr02	irgsp1_rep	three_prime_UTR	32156144	32156315	.	+	.	Parent=Os02t0763000-01
Chr02	irgsp1_rep	mRNA	32164570	32167818	.	+	.	ID=Os02t0763200-01;Name=Os02t0763200-01;Locus_id=Os02g0763200;Note=Similar to Galactoside 2-alpha-L-fucosyltransferase (EC 2.4.1.69) (Xyloglucan alpha-(1%2C2)-fucosyltransferase) (AtFUT1).;Transcript_evidence=AK072854 (DDBJ%2C Best hit);ORF_evidence=B8AIV6 (UniProt);GO=Biological Process: cell wall biogenesis (GO:0042546),Cellular Component: membrane (GO:0016020),Molecular Function: galactoside 2-alpha-L-fucosyltransferase activity (GO:0008107);InterPro=Xyloglucan fucosyltransferase (IPR004938);NIAS_FLcDNA=J023138A15;Expression=AK072854;TENOR=Os02t0763200-01;KEGG=Os02t0763200-01 (EC:2.4.1.69)
Chr02	irgsp1_rep	five_prime_UTR	32164570	32164755	.	+	.	Parent=Os02t0763200-01
Chr02	irgsp1_rep	CDS	32164756	32164993	.	+	0	Parent=Os02t0763200-01
Chr02	irgsp1_rep	CDS	32166098	32167587	.	+	2	Parent=Os02t0763200-01
Chr02	irgsp1_rep	three_prime_UTR	32167588	32167818	.	+	.	Parent=Os02t0763200-01
Chr02	irgsp1_rep	mRNA	32174923	32176156	.	-	.	ID=Os02t0763501-00;Name=Os02t0763501-00;Locus_id=Os02g0763501;Note=Similar to Serine threonine kinase 1.;Transcript_evidence=BT060544 (DDBJ);ORF_evidence=Q9ATX1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os02t0763501-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	32176148	32176156	.	-	.	Parent=Os02t0763501-00
Chr02	irgsp1_rep	CDS	32175683	32176147	.	-	0	Parent=Os02t0763501-00
Chr02	irgsp1_rep	CDS	32174923	32175381	.	-	0	Parent=Os02t0763501-00
Chr02	irgsp1_rep	mRNA	32177755	32179122	.	+	.	ID=Os02t0763800-01;Name=Os02t0763800-01;Locus_id=Os02g0763800;Note=Xyloglucan fucosyltransferase domain containing protein.;Transcript_evidence=AK108759 (DDBJ%2C Best hit);ORF_evidence=A3ABN0 (UniProt);GO=Biological Process: cell wall biogenesis (GO:0042546),Cellular Component: membrane (GO:0016020),Molecular Function: galactoside 2-alpha-L-fucosyltransferase activity (GO:0008107);InterPro=Xyloglucan fucosyltransferase (IPR004938);NIAS_FLcDNA=002-150-G04;TENOR=Os02t0763800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	32177755	32179092	.	+	0	Parent=Os02t0763800-01
Chr02	irgsp1_rep	three_prime_UTR	32179093	32179122	.	+	.	Parent=Os02t0763800-01
Chr02	irgsp1_rep	mRNA	32179355	32187390	.	+	.	ID=Os02t0763900-01;Name=Os02t0763900-01;Locus_id=Os02g0763900;Note=Similar to Galactoside 2-alpha-L-fucosyltransferase (EC 2.4.1.69) (Xyloglucan alpha-(1%2C2)-fucosyltransferase) (AtFUT1).;Transcript_evidence=AK100977 (DDBJ%2C Best hit);ORF_evidence=A7LIF1 (UniProt);GO=Biological Process: cell wall biogenesis (GO:0042546),Cellular Component: membrane (GO:0016020),Molecular Function: galactoside 2-alpha-L-fucosyltransferase activity (GO:0008107);InterPro=Xyloglucan fucosyltransferase (IPR004938);NIAS_FLcDNA=J023143L21;Expression=AK100977;TENOR=Os02t0763900-01;KEGG=Os02t0763900-01 (EC:2.4.1.69)
Chr02	irgsp1_rep	five_prime_UTR	32179355	32179456	.	+	.	Parent=Os02t0763900-01
Chr02	irgsp1_rep	CDS	32179457	32179556	.	+	0	Parent=Os02t0763900-01
Chr02	irgsp1_rep	CDS	32185741	32187242	.	+	2	Parent=Os02t0763900-01
Chr02	irgsp1_rep	three_prime_UTR	32187243	32187390	.	+	.	Parent=Os02t0763900-01
Chr02	irgsp1_rep	mRNA	32189251	32190049	.	+	.	ID=Os02t0764100-01;Name=Os02t0764100-01;Locus_id=Os02g0764100;Note=Similar to DNA-binding protein RAV1.;Transcript_evidence=AK066197 (DDBJ%2C Best hit);ORF_evidence=NP_001151105.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=J013055M02;TENOR=Os02t0764100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	32189251	32189252	.	+	.	Parent=Os02t0764100-01
Chr02	irgsp1_rep	CDS	32189253	32190014	.	+	0	Parent=Os02t0764100-01
Chr02	irgsp1_rep	three_prime_UTR	32190015	32190049	.	+	.	Parent=Os02t0764100-01
Chr02	irgsp1_rep	mRNA	32191250	32193980	.	+	.	ID=Os02t0764200-01;Name=Os02t0764200-01;Locus_id=Os02g0764200;Note=Similar to Xyloglucan fucosyltransferase-like [Oryza sativa (japonica cultivar-group)].;Transcript_evidence=AK102499 (DDBJ%2C Best hit);ORF_evidence=A7LIF1 (UniProt);GO=Biological Process: cell wall biogenesis (GO:0042546),Cellular Component: membrane (GO:0016020),Molecular Function: galactoside 2-alpha-L-fucosyltransferase activity (GO:0008107);InterPro=Xyloglucan fucosyltransferase (IPR004938);NIAS_FLcDNA=J033095B15;Expression=AK102499;TENOR=Os02t0764200-01;KEGG=Os02t0764200-01
Chr02	irgsp1_rep	five_prime_UTR	32191250	32191304	.	+	.	Parent=Os02t0764200-01
Chr02	irgsp1_rep	CDS	32191305	32191593	.	+	0	Parent=Os02t0764200-01
Chr02	irgsp1_rep	CDS	32192286	32193823	.	+	2	Parent=Os02t0764200-01
Chr02	irgsp1_rep	three_prime_UTR	32193824	32193980	.	+	.	Parent=Os02t0764200-01
Chr02	irgsp1_rep	mRNA	32197044	32199486	.	+	.	ID=Os02t0764400-01;Name=Os02t0764400-01;Locus_id=Os02g0764400;Oryzabase Gene Symbol Synonym(s)=OsSTA79;Note=Similar to Galactoside 2-alpha-L-fucosyltransferase (EC 2.4.1.69) (Xyloglucan alpha-(1%2C2)-fucosyltransferase) (PsFT1).;Transcript_evidence=AK101014 (DDBJ%2C Best hit);ORF_evidence=A7LIF1 (UniProt);GO=Biological Process: cell wall biogenesis (GO:0042546),Cellular Component: membrane (GO:0016020),Molecular Function: galactoside 2-alpha-L-fucosyltransferase activity (GO:0008107);InterPro=Xyloglucan fucosyltransferase (IPR004938);NIAS_FLcDNA=J023149B20;Oryzabase=19377;Expression=AK101014;TENOR=Os02t0764400-01;KEGG=Os02t0764400-01 (EC:2.4.1.69)
Chr02	irgsp1_rep	five_prime_UTR	32197044	32197045	.	+	.	Parent=Os02t0764400-01
Chr02	irgsp1_rep	CDS	32197046	32197310	.	+	0	Parent=Os02t0764400-01
Chr02	irgsp1_rep	CDS	32197878	32199313	.	+	2	Parent=Os02t0764400-01
Chr02	irgsp1_rep	three_prime_UTR	32199314	32199486	.	+	.	Parent=Os02t0764400-01
Chr02	irgsp1_rep	mRNA	32199542	32201608	.	-	.	ID=Os02t0764500-01;Name=Os02t0764500-01;Locus_id=Os02g0764500;Note=Similar to Lhca5 protein.;Transcript_evidence=AK066291 (DDBJ%2C Best hit);ORF_evidence=B6SZ37 (UniProt);GO=Biological Process: photosynthesis%2C light harvesting (GO:0009765),Cellular Component: membrane (GO:0016020);InterPro=Chlorophyll A-B binding protein%2C plant (IPR001344),Chlorophyll A-B binding protein (IPR022796),Chlorophyll a/b binding protein domain (IPR023329);NIAS_FLcDNA=J013064F21;Expression=AK066291;TENOR=Os02t0764500-01;KEGG=Os02t0764500-01
Chr02	irgsp1_rep	five_prime_UTR	32201565	32201608	.	-	.	Parent=Os02t0764500-01
Chr02	irgsp1_rep	CDS	32201356	32201564	.	-	0	Parent=Os02t0764500-01
Chr02	irgsp1_rep	CDS	32201123	32201255	.	-	1	Parent=Os02t0764500-01
Chr02	irgsp1_rep	CDS	32200406	32200518	.	-	0	Parent=Os02t0764500-01
Chr02	irgsp1_rep	CDS	32200160	32200264	.	-	1	Parent=Os02t0764500-01
Chr02	irgsp1_rep	CDS	32199964	32200052	.	-	1	Parent=Os02t0764500-01
Chr02	irgsp1_rep	CDS	32199737	32199873	.	-	2	Parent=Os02t0764500-01
Chr02	irgsp1_rep	three_prime_UTR	32199542	32199736	.	-	.	Parent=Os02t0764500-01
Chr02	irgsp1_rep	mRNA	32199542	32200053	.	-	.	ID=Os02t0764500-02;Name=Os02t0764500-02;Locus_id=Os02g0764500;Note=Similar to chlorophyll a-b binding protein 4.;Transcript_evidence=AK061711 (DDBJ%2C Best hit);ORF_evidence=B6SZ37 (UniProt);GO=Biological Process: photosynthesis%2C light harvesting (GO:0009765),Cellular Component: membrane (GO:0016020);InterPro=Chlorophyll A-B binding protein%2C plant (IPR001344),Chlorophyll A-B binding protein (IPR022796),Chlorophyll a/b binding protein domain (IPR023329);NIAS_FLcDNA=001-037-G03;Expression=AK061711;TENOR=Os02t0764500-02;KEGG=Os02t0764500-02
Chr02	irgsp1_rep	five_prime_UTR	32200052	32200053	.	-	.	Parent=Os02t0764500-02
Chr02	irgsp1_rep	CDS	32199964	32200051	.	-	0	Parent=Os02t0764500-02
Chr02	irgsp1_rep	CDS	32199737	32199873	.	-	2	Parent=Os02t0764500-02
Chr02	irgsp1_rep	three_prime_UTR	32199542	32199736	.	-	.	Parent=Os02t0764500-02
Chr02	irgsp1_rep	mRNA	32204425	32205335	.	-	.	ID=Os02t0764700-01;Name=Os02t0764700-01;Locus_id=Os02g0764700;CGSNL Gene Symbol=ERF103;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 103;Oryzabase Gene Symbol Synonym(s)=DERF5%2C OsDERF5%2C OsERF#103%2C OsERF103%2C AP2/EREBP#130%2C AP2/EREBP130;Oryzabase Gene Name Synonym(s)=drought-responsive ethylene response factor 5%2C drought-responsive ERF 5%2C ethylene response factor 103%2C APETALA2/ethylene-responsive element binding protein 130;Note=Similar to Ethylene-responsive transcription factor 4 (Ethylene-responsive element binding factor 4) (Related to APETALA-2 protein 5) (EREBP-4) (AtERF4).;Transcript_evidence=AK107146 (DDBJ%2C Best hit);ORF_evidence=NP_001147181.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=002-124-D09;Oryzabase=9691;Expression=AK107146;TENOR=Os02t0764700-01;KEGG=Os02t0764700-01
Chr02	irgsp1_rep	five_prime_UTR	32205248	32205335	.	-	.	Parent=Os02t0764700-01
Chr02	irgsp1_rep	CDS	32204519	32205247	.	-	0	Parent=Os02t0764700-01
Chr02	irgsp1_rep	three_prime_UTR	32204425	32204518	.	-	.	Parent=Os02t0764700-01
Chr02	irgsp1_rep	mRNA	32243175	32245008	.	+	.	ID=Os02t0765400-01;Name=Os02t0765400-01;Locus_id=Os02g0765400;RAP-DB Gene Symbol Synonym(s)=Amy1C;RAP-DB Gene Name Synonym(s)=Alpha-amylase 1C;CGSNL Gene Symbol=AMY1C;CGSNL Gene Name=ALPHA-AMYLASE 1C;Oryzabase Gene Symbol Synonym(s)=Amy1A/C*(RAmy1A/C)%2C alpha Amy10%2C Amy1C%2C RAmy1A/C%2C Amy1A/C*%2C Amy3%2C RAmy1C%2C OsAmy1C%2C alphaAmy10-C;Oryzabase Gene Name Synonym(s)=Alpha-amylase1C%2C Alpha-amylase 1C%2C Amylase-3%2C Alpha-amylase-1A%2C alpha-amylase 10-C;Note=Alpha Amylase;Transcript_evidence=EU267975 (Ilpumbyeo);ORF_evidence=Q6Z319;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: alpha-amylase activity (GO:0004556),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase superfamily (IPR017853),Glycosyl hydrolase%2C all-beta (IPR013780),Alpha amylase (IPR006046),Alpha-amylase%2C plant (IPR013775),Glycosyl hydrolase%2C family 13%2C catalytic domain (IPR006047),Alpha-amylase%2C C-terminal beta-sheet (IPR012850);Manual Curation=June 10%2C 2019;Literature_PMID=29051768,22967050;Oryzabase=8054;TENOR=Os02t0765400-00
Chr02	irgsp1_rep	five_prime_UTR	32243175	32243211	.	+	.	Parent=Os02t0765400-01
Chr02	irgsp1_rep	CDS	32243212	32243301	.	+	0	Parent=Os02t0765400-01
Chr02	irgsp1_rep	CDS	32243402	32243534	.	+	0	Parent=Os02t0765400-01
Chr02	irgsp1_rep	CDS	32243624	32244435	.	+	2	Parent=Os02t0765400-01
Chr02	irgsp1_rep	CDS	32244527	32244778	.	+	0	Parent=Os02t0765400-01
Chr02	irgsp1_rep	three_prime_UTR	32244779	32245008	.	+	.	Parent=Os02t0765400-01
Chr02	irgsp1_rep	mRNA	32248329	32250174	.	-	.	ID=Os02t0765600-01;Name=Os02t0765600-01;Locus_id=Os02g0765600;RAP-DB Gene Symbol Synonym(s)=AMY1A%2C Amy1A/C*(RAmy1A/C)%2C alpha Amy7%2C AMY1.1%2C Amy1A%2C RAmy1A/C%2C Amy1A/C*%2C Amy1%2C Amy1A_C%2C OsAmy1A%2C alphaAmy7-C%2C RAmy1A;RAP-DB Gene Name Synonym(s)=ALPHA-AMYLASE 1A%2C Alpha-amylase1A%2C Alpha-amylase-1A%2C Alpha-amylase isozyme 1B%2C Amylase-1;CGSNL Gene Symbol=AMY1A;CGSNL Gene Name=ALPHA-AMYLASE 1A;Oryzabase Gene Symbol Synonym(s)=Amy1A/C*(RAmy1A/C)%2C alpha Amy7%2C AMY1.1%2C Amy1A%2C RAmy1A/C%2C Amy1A/C*%2C Amy1%2C Amy1A_C%2C OsAmy1A%2C alphaAmy7-C%2C RAmy1A%2C AmyI-1%2C OsAmyI-1;Oryzabase Gene Name Synonym(s)=Alpha-amylase1A%2C Alpha-amylase-1A%2C Alpha-amylase isozyme 1B%2C Amylase-1%2C alpha-amylase I-1;Note=Alpha-amylase glycoprotein%2C Degradation of starch granule;Transcript_evidence=M24286 (Genbank),AK101744 (Genbank);ORF_evidence=P17654 (UniProt),Q0DXA4 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: alpha-amylase activity (GO:0004556),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 13 (IPR006046),Glycosyl hydrolase%2C family 13%2C catalytic domain (IPR006047),Glycosyl hydrolase%2C family 13%2C subfamily%2C catalytic domain (IPR006589),Alpha-amylase%2C C-terminal beta-sheet (IPR012850),Alpha-amylase%2C plant (IPR013775),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J033061O03;Manual Curation=June 4%2C 2019;Literature_PMID=29051768,22967050,19767453;Oryzabase=8053;Expression=AK101744;TENOR=Os02t0765600-01;KEGG=Os02t0765600-01 (EC:3.2.1.1)
Chr02	irgsp1_rep	five_prime_UTR	32250145	32250174	.	-	.	Parent=Os02t0765600-01
Chr02	irgsp1_rep	CDS	32250037	32250144	.	-	0	Parent=Os02t0765600-01
Chr02	irgsp1_rep	CDS	32249796	32249928	.	-	0	Parent=Os02t0765600-01
Chr02	irgsp1_rep	CDS	32248890	32249701	.	-	2	Parent=Os02t0765600-01
Chr02	irgsp1_rep	CDS	32248554	32248805	.	-	0	Parent=Os02t0765600-01
Chr02	irgsp1_rep	three_prime_UTR	32248329	32248553	.	-	.	Parent=Os02t0765600-01
Chr02	irgsp1_rep	mRNA	32253138	32253801	.	-	.	ID=Os02t0765800-00;Name=Os02t0765800-00;Locus_id=Os02g0765800;Note=Similar to peroxisomal multifunctional enzyme type 2.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001150496.1 (RefSeq);GO=Molecular Function: sterol binding (GO:0032934);InterPro=SCP2 sterol-binding domain (IPR003033);TENOR=Os02t0765800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	32253676	32253801	.	-	0	Parent=Os02t0765800-00
Chr02	irgsp1_rep	CDS	32253519	32253579	.	-	0	Parent=Os02t0765800-00
Chr02	irgsp1_rep	CDS	32253330	32253429	.	-	2	Parent=Os02t0765800-00
Chr02	irgsp1_rep	CDS	32253138	32253219	.	-	1	Parent=Os02t0765800-00
Chr02	irgsp1_rep	mRNA	32254101	32257127	.	-	.	ID=Os02t0765900-00;Name=Os02t0765900-00;Locus_id=Os02g0765900;Note=Similar to Ferredoxin-nitrite reductase.;Transcript_evidence=AK061893 (DDBJ%2C Secondary hit);ORF_evidence=B8YEL1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: heme binding (GO:0020037),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=Nitrite/sulphite reductase%2C hemoprotein beta-component%2C ferrodoxin-like (IPR005117),Nitrite/sulphite reductase 4Fe-4S domain (IPR006067);TENOR=Os02t0765900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	32256859	32257127	.	-	.	Parent=Os02t0765900-00
Chr02	irgsp1_rep	CDS	32256693	32256858	.	-	0	Parent=Os02t0765900-00
Chr02	irgsp1_rep	CDS	32255468	32255819	.	-	2	Parent=Os02t0765900-00
Chr02	irgsp1_rep	CDS	32255055	32255373	.	-	1	Parent=Os02t0765900-00
Chr02	irgsp1_rep	three_prime_UTR	32254101	32255054	.	-	.	Parent=Os02t0765900-00
Chr02	irgsp1_rep	mRNA	32254263	32257207	.	+	.	ID=Os02t0765925-00;Name=Os02t0765925-00;Locus_id=Os02g0765925;Note=Hypothetical protein.;Transcript_evidence=tplb0056g12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0765925-00
Chr02	irgsp1_rep	five_prime_UTR	32254263	32254263	.	+	.	Parent=Os02t0765925-00
Chr02	irgsp1_rep	CDS	32254264	32255000	.	+	0	Parent=Os02t0765925-00
Chr02	irgsp1_rep	CDS	32255084	32255357	.	+	1	Parent=Os02t0765925-00
Chr02	irgsp1_rep	CDS	32255451	32255477	.	+	0	Parent=Os02t0765925-00
Chr02	irgsp1_rep	three_prime_UTR	32255478	32255819	.	+	.	Parent=Os02t0765925-00
Chr02	irgsp1_rep	three_prime_UTR	32256693	32257207	.	+	.	Parent=Os02t0765925-00
Chr02	irgsp1_rep	mRNA	32261813	32267607	.	-	.	ID=Os02t0766000-01;Name=Os02t0766000-01;Locus_id=Os02g0766000;Note=Similar to defective chloroplasts and leaves protein-related / DCL protein-related.;Transcript_evidence=AK062805 (DDBJ%2C Best hit);ORF_evidence=NP_683398.1 (RefSeq);GO=Biological Process: amine metabolic process (GO:0009308),Molecular Function: copper ion binding (GO:0005507),Molecular Function: quinone binding (GO:0048038);InterPro=Copper amine oxidase%2C N2/N3-terminal (IPR015801),Protein of unknown function DUF3223 (IPR021602);NIAS_FLcDNA=001-107-D05;TENOR=Os02t0766000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	32267606	32267607	.	-	.	Parent=Os02t0766000-01
Chr02	irgsp1_rep	CDS	32267511	32267605	.	-	0	Parent=Os02t0766000-01
Chr02	irgsp1_rep	CDS	32266962	32266982	.	-	1	Parent=Os02t0766000-01
Chr02	irgsp1_rep	CDS	32262494	32262608	.	-	1	Parent=Os02t0766000-01
Chr02	irgsp1_rep	CDS	32261826	32262014	.	-	0	Parent=Os02t0766000-01
Chr02	irgsp1_rep	three_prime_UTR	32261813	32261825	.	-	.	Parent=Os02t0766000-01
Chr02	irgsp1_rep	mRNA	32261594	32267534	.	-	.	ID=Os02t0766000-02;Name=Os02t0766000-02;Locus_id=Os02g0766000;Note=Similar to Protein DCL%2C chloroplastic.;Transcript_evidence=AK067075 (DDBJ%2C Best hit);ORF_evidence=Q42463 (UniProt);NIAS_FLcDNA=J013091G15;TENOR=Os02t0766000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	32267375	32267534	.	-	.	Parent=Os02t0766000-02
Chr02	irgsp1_rep	CDS	32266965	32267374	.	-	0	Parent=Os02t0766000-02
Chr02	irgsp1_rep	CDS	32262586	32262607	.	-	1	Parent=Os02t0766000-02
Chr02	irgsp1_rep	three_prime_UTR	32262494	32262585	.	-	.	Parent=Os02t0766000-02
Chr02	irgsp1_rep	three_prime_UTR	32261594	32262014	.	-	.	Parent=Os02t0766000-02
Chr02	irgsp1_rep	mRNA	32273871	32275117	.	+	.	ID=Os02t0766600-01;Name=Os02t0766600-01;Locus_id=Os02g0766600;Note=Protein of unknown function DUF1685 family protein.;Transcript_evidence=AK099386 (DDBJ%2C Best hit),AK059779 (DDBJ%2C Best hit);ORF_evidence=A2X9Z2 (UniProt);InterPro=Protein of unknown function DUF1685 (IPR012881);NIAS_FLcDNA=J033072H02,006-204-C02;Expression=AK099386;TENOR=Os02t0766600-01;KEGG=Os02t0766600-01
Chr02	irgsp1_rep	five_prime_UTR	32273871	32274008	.	+	.	Parent=Os02t0766600-01
Chr02	irgsp1_rep	CDS	32274009	32274486	.	+	0	Parent=Os02t0766600-01
Chr02	irgsp1_rep	CDS	32274778	32274857	.	+	2	Parent=Os02t0766600-01
Chr02	irgsp1_rep	three_prime_UTR	32274858	32275117	.	+	.	Parent=Os02t0766600-01
Chr02	irgsp1_rep	mRNA	32276662	32281580	.	-	.	ID=Os02t0766700-01;Name=Os02t0766700-01;Locus_id=Os02g0766700;RAP-DB Gene Symbol Synonym(s)=BZIP23%2C OsbZIP23%2C OsAREB1%2C OsABF2%2C Osbzip23%2C OsAREB2;RAP-DB Gene Name Synonym(s)=b-ZIP TRANSCRIPTION FACTOR 23%2C Transcription Factor OsbZIP23%2C bZIP transcription factor 23%2C AREB/ABF-family protein 1;CGSNL Gene Symbol=BZIP23;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 23;Oryzabase Gene Symbol Synonym(s)=OsbZIP23%2C OsAREB1%2C OsABF2%2C Osbzip23%2C OsAREB2%2C OsZIP23%2C ZIP23;Oryzabase Gene Name Synonym(s)=Transcription Factor OsbZIP23%2C bZIP transcription factor 23%2C AREB/ABF-family protein 1;Note=bZIP transcription factor%2C Regulation of ABA signaling and biosynthesis%2C Drought resistance;Transcript_evidence=AK072062;ORF_evidence=Q6Z312;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Basic-leucine zipper domain (IPR004827);NIAS_FLcDNA=J013109E06;Manual Curation=August 5%2C 2016;Literature_PMID=27325665;Oryzabase=9808;Expression=AK072062;TENOR=Os02t0766700-01;KEGG=Os02t0766700-01
Chr02	irgsp1_rep	five_prime_UTR	32281365	32281580	.	-	.	Parent=Os02t0766700-01
Chr02	irgsp1_rep	CDS	32280474	32281364	.	-	0	Parent=Os02t0766700-01
Chr02	irgsp1_rep	CDS	32279939	32280010	.	-	0	Parent=Os02t0766700-01
Chr02	irgsp1_rep	CDS	32278835	32278864	.	-	0	Parent=Os02t0766700-01
Chr02	irgsp1_rep	CDS	32277199	32277279	.	-	0	Parent=Os02t0766700-01
Chr02	irgsp1_rep	three_prime_UTR	32276662	32277198	.	-	.	Parent=Os02t0766700-01
Chr02	irgsp1_rep	mRNA	32283959	32285615	.	-	.	ID=Os02t0766900-00;Name=Os02t0766900-00;Locus_id=Os02g0766900;Note=Similar to 1%2C4-beta-D-mannan endohydrolase.;Transcript_evidence=EU970362 (DDBJ);ORF_evidence=B6TVD7 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);TENOR=Os02t0766900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	32285262	32285615	.	-	0	Parent=Os02t0766900-00
Chr02	irgsp1_rep	CDS	32284951	32285173	.	-	0	Parent=Os02t0766900-00
Chr02	irgsp1_rep	CDS	32284731	32284853	.	-	2	Parent=Os02t0766900-00
Chr02	irgsp1_rep	CDS	32284428	32284624	.	-	2	Parent=Os02t0766900-00
Chr02	irgsp1_rep	CDS	32283959	32284345	.	-	0	Parent=Os02t0766900-00
Chr02	irgsp1_rep	mRNA	32286725	32291225	.	-	.	ID=Os02t0767000-01;Name=Os02t0767000-01;Locus_id=Os02g0767000;CGSNL Gene Symbol=REM5.1;CGSNL Gene Name=REMORIN 5.1;Oryzabase Gene Symbol Synonym(s)=OsREM5.1;Oryzabase Gene Name Synonym(s)=Remorin 5.1%2C remorin group 5 member 1;Note=Remorin%2C C-terminal domain containing protein.;Transcript_evidence=AK122109 (DDBJ%2C Best hit);ORF_evidence=B9F3E9 (UniProt);InterPro=Remorin%2C C-terminal (IPR005516);NIAS_FLcDNA=J033127E16;Oryzabase=20275;TENOR=Os02t0767000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	32291225	32291225	.	-	.	Parent=Os02t0767000-01
Chr02	irgsp1_rep	CDS	32291119	32291224	.	-	0	Parent=Os02t0767000-01
Chr02	irgsp1_rep	CDS	32290252	32291028	.	-	2	Parent=Os02t0767000-01
Chr02	irgsp1_rep	CDS	32288914	32289271	.	-	2	Parent=Os02t0767000-01
Chr02	irgsp1_rep	CDS	32287685	32287766	.	-	1	Parent=Os02t0767000-01
Chr02	irgsp1_rep	CDS	32287340	32287540	.	-	0	Parent=Os02t0767000-01
Chr02	irgsp1_rep	three_prime_UTR	32287281	32287339	.	-	.	Parent=Os02t0767000-01
Chr02	irgsp1_rep	three_prime_UTR	32286725	32287161	.	-	.	Parent=Os02t0767000-01
Chr02	irgsp1_rep	mRNA	32286776	32292075	.	+	.	ID=Os02t0767050-00;Name=Os02t0767050-00;Locus_id=Os02g0767050;Note=Hypothetical protein.;Transcript_evidence=tplb0035l08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0767050-00
Chr02	irgsp1_rep	five_prime_UTR	32286776	32287080	.	+	.	Parent=Os02t0767050-00
Chr02	irgsp1_rep	five_prime_UTR	32287235	32287540	.	+	.	Parent=Os02t0767050-00
Chr02	irgsp1_rep	five_prime_UTR	32287685	32287764	.	+	.	Parent=Os02t0767050-00
Chr02	irgsp1_rep	five_prime_UTR	32288912	32289273	.	+	.	Parent=Os02t0767050-00
Chr02	irgsp1_rep	five_prime_UTR	32290261	32290934	.	+	.	Parent=Os02t0767050-00
Chr02	irgsp1_rep	CDS	32290935	32291028	.	+	0	Parent=Os02t0767050-00
Chr02	irgsp1_rep	CDS	32291119	32291229	.	+	2	Parent=Os02t0767050-00
Chr02	irgsp1_rep	CDS	32291333	32291424	.	+	2	Parent=Os02t0767050-00
Chr02	irgsp1_rep	CDS	32291882	32292075	.	+	0	Parent=Os02t0767050-00
Chr02	irgsp1_rep	mRNA	32295335	32298691	.	+	.	ID=Os02t0767100-01;Name=Os02t0767100-01;Locus_id=Os02g0767100;Note=Similar to Cold-induced protein.;Transcript_evidence=AK103640 (DDBJ%2C Best hit),AK063351 (DDBJ%2C Best hit);ORF_evidence=D5LMF8 (UniProt);InterPro=THO complex%2C subunit 5 (IPR019163);NIAS_FLcDNA=J033134I01,001-114-C01;TENOR=Os02t0767100-01
Chr02	irgsp1_rep	five_prime_UTR	32295335	32295396	.	+	.	Parent=Os02t0767100-01
Chr02	irgsp1_rep	CDS	32295397	32295639	.	+	0	Parent=Os02t0767100-01
Chr02	irgsp1_rep	CDS	32295734	32296024	.	+	0	Parent=Os02t0767100-01
Chr02	irgsp1_rep	CDS	32296664	32297000	.	+	0	Parent=Os02t0767100-01
Chr02	irgsp1_rep	CDS	32297451	32297785	.	+	2	Parent=Os02t0767100-01
Chr02	irgsp1_rep	CDS	32298270	32298521	.	+	0	Parent=Os02t0767100-01
Chr02	irgsp1_rep	three_prime_UTR	32298522	32298691	.	+	.	Parent=Os02t0767100-01
Chr02	irgsp1_rep	mRNA	32295340	32300308	.	-	.	ID=Os02t0767150-01;Name=Os02t0767150-01;Locus_id=Os02g0767150;Note=Hypothetical gene.;Transcript_evidence=AK287442 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J043015N08;TENOR=Os02t0767150-01;KEGG=Os02t0767150-01
Chr02	irgsp1_rep	five_prime_UTR	32299672	32300308	.	-	.	Parent=Os02t0767150-01
Chr02	irgsp1_rep	five_prime_UTR	32299181	32299590	.	-	.	Parent=Os02t0767150-01
Chr02	irgsp1_rep	CDS	32298839	32299180	.	-	0	Parent=Os02t0767150-01
Chr02	irgsp1_rep	three_prime_UTR	32298803	32298838	.	-	.	Parent=Os02t0767150-01
Chr02	irgsp1_rep	three_prime_UTR	32298270	32298517	.	-	.	Parent=Os02t0767150-01
Chr02	irgsp1_rep	three_prime_UTR	32296664	32297785	.	-	.	Parent=Os02t0767150-01
Chr02	irgsp1_rep	three_prime_UTR	32295734	32296024	.	-	.	Parent=Os02t0767150-01
Chr02	irgsp1_rep	three_prime_UTR	32295340	32295639	.	-	.	Parent=Os02t0767150-01
Chr02	irgsp1_rep	mRNA	32300533	32303982	.	-	.	ID=Os02t0767200-01;Name=Os02t0767200-01;Locus_id=Os02g0767200;Note=Lipase%2C class 3 family protein.;Transcript_evidence=AK064404 (DDBJ%2C Best hit);ORF_evidence=A2XA00 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921);NIAS_FLcDNA=002-108-H07;Expression=AK064404;TENOR=Os02t0767200-01;KEGG=Os02t0767200-01
Chr02	irgsp1_rep	five_prime_UTR	32303891	32303982	.	-	.	Parent=Os02t0767200-01
Chr02	irgsp1_rep	CDS	32303551	32303890	.	-	0	Parent=Os02t0767200-01
Chr02	irgsp1_rep	CDS	32302741	32302934	.	-	2	Parent=Os02t0767200-01
Chr02	irgsp1_rep	CDS	32302613	32302646	.	-	0	Parent=Os02t0767200-01
Chr02	irgsp1_rep	CDS	32301646	32302274	.	-	2	Parent=Os02t0767200-01
Chr02	irgsp1_rep	CDS	32300773	32301024	.	-	0	Parent=Os02t0767200-01
Chr02	irgsp1_rep	three_prime_UTR	32300533	32300772	.	-	.	Parent=Os02t0767200-01
Chr02	irgsp1_rep	mRNA	32300535	32302267	.	-	.	ID=Os02t0767200-02;Name=Os02t0767200-02;Locus_id=Os02g0767200;Note=Similar to predicted protein.;Transcript_evidence=AK103250 (DDBJ%2C Best hit);ORF_evidence=XP_002863716.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921);NIAS_FLcDNA=J033123M10;Expression=AK103250;TENOR=Os02t0767200-02;KEGG=Os02t0767200-02
Chr02	irgsp1_rep	five_prime_UTR	32302267	32302267	.	-	.	Parent=Os02t0767200-02
Chr02	irgsp1_rep	CDS	32301646	32302266	.	-	0	Parent=Os02t0767200-02
Chr02	irgsp1_rep	CDS	32300773	32301024	.	-	0	Parent=Os02t0767200-02
Chr02	irgsp1_rep	three_prime_UTR	32300535	32300772	.	-	.	Parent=Os02t0767200-02
Chr02	irgsp1_rep	mRNA	32310799	32312184	.	-	.	ID=Os02t0767300-01;Name=Os02t0767300-01;Locus_id=Os02g0767300;RAP-DB Gene Symbol Synonym(s)=OsFLS;RAP-DB Gene Name Synonym(s)=flavonol synthase;Oryzabase Gene Symbol Synonym(s)=FLS%2C 2-ODD15%2C Os2-ODD15%2C 2ODD15%2C Os2ODD15;Oryzabase Gene Name Synonym(s)=flavonol synthase%2C 2-oxoglutarate-dependent dioxygenase 15;Note=Flavonol synthase%2C Bifunctional 2-oxoglutarate-dependent dioxygenase;Transcript_evidence=AK072697;ORF_evidence=Q6Z306;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Isopenicillin N synthase-like (IPR027443),Non-haem dioxygenase N-terminal domain (IPR026992),Oxoglutarate/iron-dependent dioxygenase (IPR005123);NIAS_FLcDNA=J023136E04;Manual Curation=July 2%2C 2019;Literature_PMID=31244203;Oryzabase=12418;Expression=AK072697;TENOR=Os02t0767300-01;KEGG=Os02t0767300-01 (EC:1.14.11.23)
Chr02	irgsp1_rep	five_prime_UTR	32312098	32312184	.	-	.	Parent=Os02t0767300-01
Chr02	irgsp1_rep	CDS	32311643	32312097	.	-	0	Parent=Os02t0767300-01
Chr02	irgsp1_rep	CDS	32311242	32311569	.	-	1	Parent=Os02t0767300-01
Chr02	irgsp1_rep	CDS	32310937	32311149	.	-	0	Parent=Os02t0767300-01
Chr02	irgsp1_rep	three_prime_UTR	32310799	32310936	.	-	.	Parent=Os02t0767300-01
Chr02	irgsp1_rep	mRNA	32312953	32315992	.	-	.	ID=Os02t0767400-01;Name=Os02t0767400-01;Locus_id=Os02g0767400;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK072314 (DDBJ%2C Best hit);ORF_evidence=A3ABQ1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023019A19;Expression=AK072314;TENOR=Os02t0767400-01;KEGG=Os02t0767400-01
Chr02	irgsp1_rep	five_prime_UTR	32315854	32315992	.	-	.	Parent=Os02t0767400-01
Chr02	irgsp1_rep	CDS	32313136	32315853	.	-	0	Parent=Os02t0767400-01
Chr02	irgsp1_rep	three_prime_UTR	32312953	32313135	.	-	.	Parent=Os02t0767400-01
Chr02	irgsp1_rep	mRNA	32319387	32323332	.	-	.	ID=Os02t0767500-01;Name=Os02t0767500-01;Locus_id=Os02g0767500;CGSNL Gene Symbol=PT15;CGSNL Gene Name=PHOSPHATE TRANSPORTER 15;Oryzabase Gene Symbol Synonym(s)=OsPT15;Oryzabase Gene Name Synonym(s)=phosphate transporter 15;Note=Mitochondrial phosphate transporter.;Transcript_evidence=AK069611 (DDBJ%2C Best hit);ORF_evidence=NP_001104842.1 (RefSeq);InterPro=Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J023022H13;Oryzabase=21401;Expression=AK069611;TENOR=Os02t0767500-01;KEGG=Os02t0767500-01
Chr02	irgsp1_rep	five_prime_UTR	32323158	32323332	.	-	.	Parent=Os02t0767500-01
Chr02	irgsp1_rep	CDS	32322864	32323157	.	-	0	Parent=Os02t0767500-01
Chr02	irgsp1_rep	CDS	32321694	32322055	.	-	0	Parent=Os02t0767500-01
Chr02	irgsp1_rep	CDS	32321550	32321593	.	-	1	Parent=Os02t0767500-01
Chr02	irgsp1_rep	CDS	32320479	32320693	.	-	2	Parent=Os02t0767500-01
Chr02	irgsp1_rep	CDS	32319879	32320003	.	-	0	Parent=Os02t0767500-01
Chr02	irgsp1_rep	CDS	32319716	32319782	.	-	1	Parent=Os02t0767500-01
Chr02	irgsp1_rep	three_prime_UTR	32319387	32319715	.	-	.	Parent=Os02t0767500-01
Chr02	irgsp1_rep	mRNA	32324316	32326103	.	+	.	ID=Os02t0767600-00;Name=Os02t0767600-00;Locus_id=Os02g0767600;Note=Similar to RHC1A.;Transcript_evidence=CT835444 (DDBJ%2C Best hit);ORF_evidence=NP_001149547.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);TENOR=Os02t0767600-00;KEGG=Os02t0767600-00 (EC:6.3.2.19)
Chr02	irgsp1_rep	five_prime_UTR	32324316	32324473	.	+	.	Parent=Os02t0767600-00
Chr02	irgsp1_rep	CDS	32324474	32325422	.	+	0	Parent=Os02t0767600-00
Chr02	irgsp1_rep	CDS	32325713	32325750	.	+	2	Parent=Os02t0767600-00
Chr02	irgsp1_rep	three_prime_UTR	32325751	32325801	.	+	.	Parent=Os02t0767600-00
Chr02	irgsp1_rep	three_prime_UTR	32325896	32326103	.	+	.	Parent=Os02t0767600-00
Chr02	irgsp1_rep	mRNA	32326231	32330111	.	-	.	ID=Os02t0767700-01;Name=Os02t0767700-01;Locus_id=Os02g0767700;CGSNL Gene Symbol=ERF126;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 126;Oryzabase Gene Symbol Synonym(s)=OsERF#126%2C OsERF126;Oryzabase Gene Name Synonym(s)=ethylene response factor 126;Note=YbaK/aminoacyl-tRNA synthetase associated region domain containing protein.;Transcript_evidence=AK071237 (DDBJ%2C Best hit);ORF_evidence=NP_001031149.1 (RefSeq);InterPro=YbaK/aminoacyl-tRNA synthetase-associated domain (IPR007214);NIAS_FLcDNA=J023086E09;Oryzabase=10620;Expression=AK071237;TENOR=Os02t0767700-01;KEGG=Os02t0767700-01
Chr02	irgsp1_rep	five_prime_UTR	32330037	32330111	.	-	.	Parent=Os02t0767700-01
Chr02	irgsp1_rep	CDS	32329998	32330036	.	-	0	Parent=Os02t0767700-01
Chr02	irgsp1_rep	CDS	32329506	32329565	.	-	0	Parent=Os02t0767700-01
Chr02	irgsp1_rep	CDS	32329366	32329419	.	-	0	Parent=Os02t0767700-01
Chr02	irgsp1_rep	CDS	32329223	32329283	.	-	0	Parent=Os02t0767700-01
Chr02	irgsp1_rep	CDS	32329059	32329135	.	-	2	Parent=Os02t0767700-01
Chr02	irgsp1_rep	CDS	32328679	32328728	.	-	0	Parent=Os02t0767700-01
Chr02	irgsp1_rep	CDS	32328190	32328272	.	-	1	Parent=Os02t0767700-01
Chr02	irgsp1_rep	CDS	32327844	32327914	.	-	2	Parent=Os02t0767700-01
Chr02	irgsp1_rep	CDS	32327370	32327520	.	-	0	Parent=Os02t0767700-01
Chr02	irgsp1_rep	CDS	32326925	32327055	.	-	2	Parent=Os02t0767700-01
Chr02	irgsp1_rep	CDS	32326762	32326854	.	-	0	Parent=Os02t0767700-01
Chr02	irgsp1_rep	CDS	32326328	32326423	.	-	0	Parent=Os02t0767700-01
Chr02	irgsp1_rep	three_prime_UTR	32326231	32326327	.	-	.	Parent=Os02t0767700-01
Chr02	irgsp1_rep	mRNA	32330769	32332114	.	-	.	ID=Os02t0767800-00;Name=Os02t0767800-00;Locus_id=Os02g0767800;CGSNL Gene Symbol=AP2/EREBP139;CGSNL Gene Name=APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 139;Oryzabase Gene Symbol Synonym(s)=AP2/EREBP#139;Oryzabase Gene Name Synonym(s)=APETALA2/ethylene-responsive element binding protein 139;Note=Similar to DNA binding protein.;Transcript_evidence=BT037212 (DDBJ);ORF_evidence=NP_001150968.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);Oryzabase=10649;TENOR=Os02t0767800-00;KEGG=Os02t0767800-00
Chr02	irgsp1_rep	CDS	32331209	32332114	.	-	0	Parent=Os02t0767800-00
Chr02	irgsp1_rep	three_prime_UTR	32330992	32331208	.	-	.	Parent=Os02t0767800-00
Chr02	irgsp1_rep	three_prime_UTR	32330769	32330936	.	-	.	Parent=Os02t0767800-00
Chr02	irgsp1_rep	mRNA	32349092	32349898	.	+	.	ID=Os02t0767900-01;Name=Os02t0767900-01;Locus_id=Os02g0767900;Note=Glutaredoxin 2 family protein.;Transcript_evidence=AK099885 (DDBJ%2C Best hit);ORF_evidence=NP_001151051.1 (RefSeq);InterPro=Glutaredoxin-like (IPR008554),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=J013112B06;Expression=AK099885;TENOR=Os02t0767900-01;KEGG=Os02t0767900-01
Chr02	irgsp1_rep	five_prime_UTR	32349092	32349120	.	+	.	Parent=Os02t0767900-01
Chr02	irgsp1_rep	CDS	32349121	32349372	.	+	0	Parent=Os02t0767900-01
Chr02	irgsp1_rep	CDS	32349463	32349555	.	+	0	Parent=Os02t0767900-01
Chr02	irgsp1_rep	CDS	32349660	32349737	.	+	0	Parent=Os02t0767900-01
Chr02	irgsp1_rep	three_prime_UTR	32349738	32349898	.	+	.	Parent=Os02t0767900-01
Chr02	irgsp1_rep	mRNA	32349988	32352663	.	-	.	ID=Os02t0768000-01;Name=Os02t0768000-01;Locus_id=Os02g0768000;Note=Conserved hypothetical protein.;Transcript_evidence=AK106634 (DDBJ%2C Best hit);ORF_evidence=B8AJ50 (UniProt);NIAS_FLcDNA=002-113-D06;Expression=AK106634;TENOR=Os02t0768000-01;KEGG=Os02t0768000-01
Chr02	irgsp1_rep	five_prime_UTR	32352508	32352663	.	-	.	Parent=Os02t0768000-01
Chr02	irgsp1_rep	CDS	32352276	32352507	.	-	0	Parent=Os02t0768000-01
Chr02	irgsp1_rep	CDS	32351875	32351984	.	-	2	Parent=Os02t0768000-01
Chr02	irgsp1_rep	CDS	32351433	32351795	.	-	0	Parent=Os02t0768000-01
Chr02	irgsp1_rep	CDS	32350697	32351209	.	-	0	Parent=Os02t0768000-01
Chr02	irgsp1_rep	three_prime_UTR	32349988	32350337	.	-	.	Parent=Os02t0768000-01
Chr02	irgsp1_rep	mRNA	32350105	32352907	.	+	.	ID=Os02t0768100-01;Name=Os02t0768100-01;Locus_id=Os02g0768100;Note=Hypothetical protein.;Transcript_evidence=AK119344 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-131-E01;Expression=AK119344;TENOR=Os02t0768100-01;KEGG=Os02t0768100-01
Chr02	irgsp1_rep	five_prime_UTR	32350105	32352220	.	+	.	Parent=Os02t0768100-01
Chr02	irgsp1_rep	CDS	32352221	32352568	.	+	0	Parent=Os02t0768100-01
Chr02	irgsp1_rep	three_prime_UTR	32352569	32352907	.	+	.	Parent=Os02t0768100-01
Chr02	irgsp1_rep	mRNA	32353248	32356451	.	-	.	ID=Os02t0768200-01;Name=Os02t0768200-01;Locus_id=Os02g0768200;Note=emp24/gp25L/p24 family protein.;Transcript_evidence=AK070007 (DDBJ%2C Best hit);ORF_evidence=B4FVH9 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: integral to membrane (GO:0016021);InterPro=GOLD (IPR009038);NIAS_FLcDNA=J023034G24;Expression=AK070007;TENOR=Os02t0768200-01;KEGG=Os02t0768200-01
Chr02	irgsp1_rep	five_prime_UTR	32356377	32356451	.	-	.	Parent=Os02t0768200-01
Chr02	irgsp1_rep	CDS	32356152	32356376	.	-	0	Parent=Os02t0768200-01
Chr02	irgsp1_rep	CDS	32354370	32354579	.	-	0	Parent=Os02t0768200-01
Chr02	irgsp1_rep	CDS	32354185	32354261	.	-	0	Parent=Os02t0768200-01
Chr02	irgsp1_rep	CDS	32353650	32353794	.	-	1	Parent=Os02t0768200-01
Chr02	irgsp1_rep	three_prime_UTR	32353248	32353649	.	-	.	Parent=Os02t0768200-01
Chr02	irgsp1_rep	mRNA	32353428	32355340	.	-	.	ID=Os02t0768200-02;Name=Os02t0768200-02;Locus_id=Os02g0768200;Note=Similar to transmembrane emp24 domain-containing protein 10.;Transcript_evidence=AK103111 (DDBJ%2C Best hit);ORF_evidence=B4FVH9 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: integral to membrane (GO:0016021);InterPro=GOLD (IPR009038);NIAS_FLcDNA=J033119C19;Expression=AK103111;TENOR=Os02t0768200-02;KEGG=Os02t0768200-02
Chr02	irgsp1_rep	five_prime_UTR	32354607	32355340	.	-	.	Parent=Os02t0768200-02
Chr02	irgsp1_rep	CDS	32354316	32354606	.	-	0	Parent=Os02t0768200-02
Chr02	irgsp1_rep	three_prime_UTR	32354185	32354315	.	-	.	Parent=Os02t0768200-02
Chr02	irgsp1_rep	three_prime_UTR	32353428	32353794	.	-	.	Parent=Os02t0768200-02
Chr02	irgsp1_rep	mRNA	32359193	32361902	.	-	.	ID=Os02t0768300-01;Name=Os02t0768300-01;Locus_id=Os02g0768300;Note=Protein of unknown function DUF6%2C transmembrane domain containing protein.;Transcript_evidence=AK073339 (DDBJ%2C Best hit);ORF_evidence=NP_001148990.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=J033030K15;Expression=AK073339;TENOR=Os02t0768300-01;KEGG=Os02t0768300-01
Chr02	irgsp1_rep	five_prime_UTR	32361881	32361902	.	-	.	Parent=Os02t0768300-01
Chr02	irgsp1_rep	CDS	32361690	32361880	.	-	0	Parent=Os02t0768300-01
Chr02	irgsp1_rep	CDS	32360736	32360798	.	-	1	Parent=Os02t0768300-01
Chr02	irgsp1_rep	CDS	32360530	32360646	.	-	1	Parent=Os02t0768300-01
Chr02	irgsp1_rep	CDS	32360023	32360428	.	-	1	Parent=Os02t0768300-01
Chr02	irgsp1_rep	CDS	32359776	32359927	.	-	0	Parent=Os02t0768300-01
Chr02	irgsp1_rep	CDS	32359413	32359638	.	-	1	Parent=Os02t0768300-01
Chr02	irgsp1_rep	three_prime_UTR	32359193	32359412	.	-	.	Parent=Os02t0768300-01
Chr02	irgsp1_rep	mRNA	32369917	32373572	.	-	.	ID=Os02t0768400-01;Name=Os02t0768400-01;Locus_id=Os02g0768400;Note=Hypothetical gene.;Transcript_evidence=AK242589 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090011G22;TENOR=Os02t0768400-01;KEGG=Os02t0768400-01
Chr02	irgsp1_rep	five_prime_UTR	32373451	32373572	.	-	.	Parent=Os02t0768400-01
Chr02	irgsp1_rep	five_prime_UTR	32370554	32371718	.	-	.	Parent=Os02t0768400-01
Chr02	irgsp1_rep	CDS	32370341	32370553	.	-	0	Parent=Os02t0768400-01
Chr02	irgsp1_rep	three_prime_UTR	32369917	32370340	.	-	.	Parent=Os02t0768400-01
Chr02	irgsp1_rep	mRNA	32374870	32378153	.	+	.	ID=Os02t0768600-01;Name=Os02t0768600-01;Locus_id=Os02g0768600;CGSNL Gene Symbol=PPA6;CGSNL Gene Name=INORGANIC PYROPHOSPHATASE 6;Oryzabase Gene Symbol Synonym(s)=OsPPa6%2C PPa6;Oryzabase Gene Name Synonym(s)=soluble inorganic pyrophosphatase 6%2C inorganic pyrophosphatase 6%2C PPase 6%2C sPPase 6%2C pyrophosphorylase 6;Note=Similar to Chloroplast inorganic pyrophosphatase (EC 3.6.1.1).;Transcript_evidence=AK060304 (DDBJ%2C Best hit);ORF_evidence=NP_001140851.1 (RefSeq);GO=Biological Process: phosphate-containing compound metabolic process (GO:0006796),Cellular Component: cytoplasm (GO:0005737),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: inorganic diphosphatase activity (GO:0004427);InterPro=Inorganic pyrophosphatase (IPR008162);NIAS_FLcDNA=001-007-A07;Oryzabase=22991;Expression=AK060304;TENOR=Os02t0768600-01;KEGG=Os02t0768600-01 (EC:3.6.1.1)
Chr02	irgsp1_rep	five_prime_UTR	32374870	32374871	.	+	.	Parent=Os02t0768600-01
Chr02	irgsp1_rep	CDS	32374872	32374982	.	+	0	Parent=Os02t0768600-01
Chr02	irgsp1_rep	CDS	32375090	32375388	.	+	0	Parent=Os02t0768600-01
Chr02	irgsp1_rep	CDS	32376804	32376904	.	+	1	Parent=Os02t0768600-01
Chr02	irgsp1_rep	CDS	32377000	32377181	.	+	2	Parent=Os02t0768600-01
Chr02	irgsp1_rep	CDS	32377642	32377740	.	+	0	Parent=Os02t0768600-01
Chr02	irgsp1_rep	CDS	32377818	32377910	.	+	0	Parent=Os02t0768600-01
Chr02	irgsp1_rep	three_prime_UTR	32377911	32378153	.	+	.	Parent=Os02t0768600-01
Chr02	irgsp1_rep	mRNA	32374915	32378165	.	+	.	ID=Os02t0768600-02;Name=Os02t0768600-02;Locus_id=Os02g0768600;RAP-DB Gene Symbol Synonym(s)=OsPPa6;CGSNL Gene Symbol=PPA6;CGSNL Gene Name=INORGANIC PYROPHOSPHATASE 6;Oryzabase Gene Symbol Synonym(s)=OsPPa6%2C PPa6;Oryzabase Gene Name Synonym(s)=soluble inorganic pyrophosphatase 6%2C inorganic pyrophosphatase 6%2C PPase 6%2C sPPase 6%2C pyrophosphorylase 6;Note=Inorganic pyrophosphatase%2C Member of sPPase%2C Alkaline tolerance%2C Osmotic regulatory factor;Transcript_evidence=AK059725,AK098996,AK099120,AK104659;ORF_evidence=Q6ZGJ8;GO=Biological Process: phosphate-containing compound metabolic process (GO:0006796),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: inorganic diphosphatase activity (GO:0004427),Cellular Component: cytoplasm (GO:0005737);InterPro=Inorganic pyrophosphatase superfamily (IPR036649),Inorganic pyrophosphatase (IPR008162);NIAS_FLcDNA=006-201-B08,J013102B11,J023036A18,006-311-D07;Manual Curation=July 1%2C 2019;Literature_PMID=31244876;Oryzabase=22991;TENOR=Os02t0768600-02
Chr02	irgsp1_rep	five_prime_UTR	32374915	32375002	.	+	.	Parent=Os02t0768600-02
Chr02	irgsp1_rep	CDS	32375003	32375388	.	+	0	Parent=Os02t0768600-02
Chr02	irgsp1_rep	CDS	32376804	32376904	.	+	1	Parent=Os02t0768600-02
Chr02	irgsp1_rep	CDS	32377000	32377181	.	+	2	Parent=Os02t0768600-02
Chr02	irgsp1_rep	CDS	32377642	32377740	.	+	0	Parent=Os02t0768600-02
Chr02	irgsp1_rep	CDS	32377818	32377910	.	+	0	Parent=Os02t0768600-02
Chr02	irgsp1_rep	three_prime_UTR	32377911	32378165	.	+	.	Parent=Os02t0768600-02
Chr02	irgsp1_rep	mRNA	32378150	32381518	.	-	.	ID=Os02t0768700-01;Name=Os02t0768700-01;Locus_id=Os02g0768700;Note=Protein of unknown function DUF573 domain containing protein.;Transcript_evidence=AK289234 (DDBJ%2C Best hit);ORF_evidence=Q6ZGJ6 (UniProt);InterPro=Protein of unknown function DUF573 (IPR007592);NIAS_FLcDNA=J100073J19;TENOR=Os02t0768700-01;KEGG=Os02t0768700-01
Chr02	irgsp1_rep	five_prime_UTR	32381458	32381518	.	-	.	Parent=Os02t0768700-01
Chr02	irgsp1_rep	CDS	32380573	32381457	.	-	0	Parent=Os02t0768700-01
Chr02	irgsp1_rep	three_prime_UTR	32380568	32380572	.	-	.	Parent=Os02t0768700-01
Chr02	irgsp1_rep	three_prime_UTR	32378150	32378666	.	-	.	Parent=Os02t0768700-01
Chr02	irgsp1_rep	mRNA	32384720	32389459	.	+	.	ID=Os02t0768750-00;Name=Os02t0768750-00;Locus_id=Os02g0768750;Note=Hypothetical conserved gene.;Transcript_evidence=EU943315 (DDBJ);ORF_evidence=A3ABR1 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-type%2C conserved site (IPR019786),Zinc finger%2C PHD-finger (IPR019787);TENOR=Os02t0768750-00;KEGG=Os02t0768750-00
Chr02	irgsp1_rep	five_prime_UTR	32384720	32384845	.	+	.	Parent=Os02t0768750-00
Chr02	irgsp1_rep	CDS	32384846	32386169	.	+	0	Parent=Os02t0768750-00
Chr02	irgsp1_rep	CDS	32388052	32388137	.	+	2	Parent=Os02t0768750-00
Chr02	irgsp1_rep	CDS	32388216	32388584	.	+	0	Parent=Os02t0768750-00
Chr02	irgsp1_rep	CDS	32388681	32388764	.	+	0	Parent=Os02t0768750-00
Chr02	irgsp1_rep	CDS	32388869	32389459	.	+	0	Parent=Os02t0768750-00
Chr02	irgsp1_rep	mRNA	32394937	32395420	.	+	.	ID=Os02t0768800-01;Name=Os02t0768800-01;Locus_id=Os02g0768800;Note=Similar to predicted protein.;Transcript_evidence=AK063192 (DDBJ%2C Best hit);ORF_evidence=E5GCG2 (UniProt);NIAS_FLcDNA=001-112-B11;Expression=AK063192;TENOR=Os02t0768800-01;KEGG=Os02t0768800-01
Chr02	irgsp1_rep	CDS	32394937	32395089	.	+	0	Parent=Os02t0768800-01
Chr02	irgsp1_rep	three_prime_UTR	32395090	32395420	.	+	.	Parent=Os02t0768800-01
Chr02	irgsp1_rep	mRNA	32395676	32396092	.	+	.	ID=Os02t0768950-00;Name=Os02t0768950-00;Locus_id=Os02g0768950;Note=Non-protein coding transcript.;Transcript_evidence=CU405652 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os02t0768950-00
Chr02	irgsp1_rep	exon	32395676	32396092	.	+	.	Parent=Os02t0768950-00
Chr02	irgsp1_rep	mRNA	32418493	32419361	.	+	.	ID=Os02t0769100-01;Name=Os02t0769100-01;Locus_id=Os02g0769100;CGSNL Gene Symbol=SAUR12;CGSNL Gene Name=SMALL AUXIN-UP RNA 12;Oryzabase Gene Symbol Synonym(s)=OsSAUR12;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 12;Note=Auxin responsive SAUR protein family protein.;Transcript_evidence=AK107987 (DDBJ%2C Best hit);ORF_evidence=B6SNK6 (UniProt);InterPro=Auxin responsive SAUR protein (IPR003676);NIAS_FLcDNA=002-135-F02;Oryzabase=9137;Expression=AK107987;TENOR=Os02t0769100-01;KEGG=Os02t0769100-01
Chr02	irgsp1_rep	five_prime_UTR	32418493	32418642	.	+	.	Parent=Os02t0769100-01
Chr02	irgsp1_rep	CDS	32418643	32419029	.	+	0	Parent=Os02t0769100-01
Chr02	irgsp1_rep	three_prime_UTR	32419030	32419361	.	+	.	Parent=Os02t0769100-01
Chr02	irgsp1_rep	mRNA	32426373	32429398	.	-	.	ID=Os02t0769200-01;Name=Os02t0769200-01;Locus_id=Os02g0769200;Oryzabase Gene Symbol Synonym(s)=LYP5%2C Os-LYP5;Oryzabase Gene Name Synonym(s)=lysin motif-containing protein 5;Note=Similar to erwinia induced protein 1.;Transcript_evidence=AK106777 (DDBJ%2C Best hit);ORF_evidence=NP_001150342.1 (RefSeq);GO=Biological Process: cell wall macromolecule catabolic process (GO:0016998);InterPro=Peptidoglycan-binding lysin domain (IPR018392);NIAS_FLcDNA=002-115-G12;Oryzabase=11162;TENOR=Os02t0769200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	32429243	32429398	.	-	.	Parent=Os02t0769200-01
Chr02	irgsp1_rep	CDS	32428478	32429242	.	-	0	Parent=Os02t0769200-01
Chr02	irgsp1_rep	three_prime_UTR	32427259	32428477	.	-	.	Parent=Os02t0769200-01
Chr02	irgsp1_rep	three_prime_UTR	32427150	32427181	.	-	.	Parent=Os02t0769200-01
Chr02	irgsp1_rep	three_prime_UTR	32426373	32426757	.	-	.	Parent=Os02t0769200-01
Chr02	irgsp1_rep	mRNA	32435410	32435777	.	+	.	ID=Os02t0769250-00;Name=Os02t0769250-00;Locus_id=Os02g0769250;Note=Non-protein coding transcript.;Transcript_evidence=EU948860 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0769250-00
Chr02	irgsp1_rep	exon	32435410	32435777	.	+	.	Parent=Os02t0769250-00
Chr02	irgsp1_rep	mRNA	32454551	32456005	.	+	.	ID=Os02t0769700-01;Name=Os02t0769700-01;Locus_id=Os02g0769700;CGSNL Gene Symbol=RLCK84;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 84;Oryzabase Gene Symbol Synonym(s)=OsRLCK84;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 84;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK111328 (DDBJ%2C Best hit);ORF_evidence=A3ABR5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-181-D12;Oryzabase=18795;Expression=AK111328;TENOR=Os02t0769700-01;KEGG=Os02t0769700-01 (EC:2.7.11.25)
Chr02	irgsp1_rep	five_prime_UTR	32454551	32454714	.	+	.	Parent=Os02t0769700-01
Chr02	irgsp1_rep	CDS	32454715	32455082	.	+	0	Parent=Os02t0769700-01
Chr02	irgsp1_rep	CDS	32455249	32455333	.	+	1	Parent=Os02t0769700-01
Chr02	irgsp1_rep	CDS	32455498	32455560	.	+	0	Parent=Os02t0769700-01
Chr02	irgsp1_rep	CDS	32455706	32455852	.	+	0	Parent=Os02t0769700-01
Chr02	irgsp1_rep	three_prime_UTR	32455853	32456005	.	+	.	Parent=Os02t0769700-01
Chr02	irgsp1_rep	mRNA	32461128	32462832	.	+	.	ID=Os02t0769800-01;Name=Os02t0769800-01;Locus_id=Os02g0769800;Note=Similar to Mitogen-activated protein kinase kinase kinase 1 (EC 2.7.1.-) (Arabidospsis NPK1-related protein kinase 1). Splice isoform 1S.;Transcript_evidence=AK062956 (DDBJ%2C Best hit);ORF_evidence=NP_192590.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-109-D01;Expression=AK062956;TENOR=Os02t0769800-01;KEGG=Os02t0769800-01 (EC:2.7.11.-)
Chr02	irgsp1_rep	five_prime_UTR	32461128	32461128	.	+	.	Parent=Os02t0769800-01
Chr02	irgsp1_rep	CDS	32461129	32461188	.	+	0	Parent=Os02t0769800-01
Chr02	irgsp1_rep	CDS	32461485	32461589	.	+	0	Parent=Os02t0769800-01
Chr02	irgsp1_rep	CDS	32461957	32462136	.	+	0	Parent=Os02t0769800-01
Chr02	irgsp1_rep	three_prime_UTR	32462137	32462177	.	+	.	Parent=Os02t0769800-01
Chr02	irgsp1_rep	three_prime_UTR	32462309	32462832	.	+	.	Parent=Os02t0769800-01
Chr02	irgsp1_rep	mRNA	32462805	32464628	.	-	.	ID=Os02t0769900-01;Name=Os02t0769900-01;Locus_id=Os02g0769900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK072755 (DDBJ%2C Best hit);ORF_evidence=A2XA19 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J023139G21;Expression=AK072755;TENOR=Os02t0769900-01;KEGG=Os02t0769900-01
Chr02	irgsp1_rep	five_prime_UTR	32464593	32464628	.	-	.	Parent=Os02t0769900-01
Chr02	irgsp1_rep	CDS	32463009	32464592	.	-	0	Parent=Os02t0769900-01
Chr02	irgsp1_rep	three_prime_UTR	32462805	32463008	.	-	.	Parent=Os02t0769900-01
Chr02	irgsp1_rep	mRNA	32462973	32464572	.	-	.	ID=Os02t0769900-02;Name=Os02t0769900-02;Locus_id=Os02g0769900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK103954 (DDBJ%2C Best hit);ORF_evidence=Q6ZH58 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-014-H03;TENOR=Os02t0769900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	32464572	32464572	.	-	.	Parent=Os02t0769900-02
Chr02	irgsp1_rep	CDS	32463009	32464571	.	-	0	Parent=Os02t0769900-02
Chr02	irgsp1_rep	three_prime_UTR	32462973	32463008	.	-	.	Parent=Os02t0769900-02
Chr02	irgsp1_rep	mRNA	32462828	32464562	.	-	.	ID=Os02t0769900-03;Name=Os02t0769900-03;Locus_id=Os02g0769900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK073145 (DDBJ%2C Best hit);ORF_evidence=Q6ZH58 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033020C08;Expression=AK073145;TENOR=Os02t0769900-03;KEGG=Os02t0769900-03
Chr02	irgsp1_rep	five_prime_UTR	32464419	32464562	.	-	.	Parent=Os02t0769900-03
Chr02	irgsp1_rep	five_prime_UTR	32464326	32464338	.	-	.	Parent=Os02t0769900-03
Chr02	irgsp1_rep	CDS	32463009	32464325	.	-	0	Parent=Os02t0769900-03
Chr02	irgsp1_rep	three_prime_UTR	32462828	32463008	.	-	.	Parent=Os02t0769900-03
Chr02	irgsp1_rep	mRNA	32465064	32468593	.	-	.	ID=Os02t0770000-01;Name=Os02t0770000-01;Locus_id=Os02g0770000;Oryzabase Gene Symbol Synonym(s)=OsPBA1;Oryzabase Gene Name Synonym(s)=20S proteasome beta1 subunit;Note=Beta 1 subunit of 20S proteasome.;Transcript_evidence=AK059837 (DDBJ%2C Best hit);ORF_evidence=A2XA20 (UniProt);GO=Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603),Cellular Component: proteasome core complex (GO:0005839),Molecular Function: endopeptidase activity (GO:0004175),Molecular Function: threonine-type endopeptidase activity (GO:0004298);InterPro=Peptidase T1A%2C proteasome beta-subunit (IPR000243),Proteasome%2C subunit alpha/beta (IPR001353),Proteasome%2C beta-type subunit%2C conserved site (IPR016050),Proteasome B-type subunit (IPR023333);NIAS_FLcDNA=006-206-C07;Oryzabase=14500;Expression=AK059837;TENOR=Os02t0770000-01;KEGG=Os02t0770000-01 (EC:3.4.25.1)
Chr02	irgsp1_rep	five_prime_UTR	32468448	32468593	.	-	.	Parent=Os02t0770000-01
Chr02	irgsp1_rep	CDS	32468306	32468447	.	-	0	Parent=Os02t0770000-01
Chr02	irgsp1_rep	CDS	32467553	32467629	.	-	2	Parent=Os02t0770000-01
Chr02	irgsp1_rep	CDS	32467181	32467236	.	-	0	Parent=Os02t0770000-01
Chr02	irgsp1_rep	CDS	32466983	32467055	.	-	1	Parent=Os02t0770000-01
Chr02	irgsp1_rep	CDS	32466687	32466798	.	-	0	Parent=Os02t0770000-01
Chr02	irgsp1_rep	CDS	32466214	32466287	.	-	2	Parent=Os02t0770000-01
Chr02	irgsp1_rep	CDS	32465924	32465998	.	-	0	Parent=Os02t0770000-01
Chr02	irgsp1_rep	CDS	32465242	32465373	.	-	0	Parent=Os02t0770000-01
Chr02	irgsp1_rep	three_prime_UTR	32465064	32465241	.	-	.	Parent=Os02t0770000-01
Chr02	irgsp1_rep	mRNA	32465058	32468562	.	-	.	ID=Os02t0770000-02;Name=Os02t0770000-02;Locus_id=Os02g0770000;Oryzabase Gene Symbol Synonym(s)=OsPBA1;Oryzabase Gene Name Synonym(s)=20S proteasome beta1 subunit;Note=Beta 1 subunit of 20S proteasome.;Transcript_evidence=AK104505 (DDBJ%2C Best hit),AK103425 (DDBJ%2C Best hit);ORF_evidence=A2XA20 (UniProt);GO=Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603),Cellular Component: proteasome core complex (GO:0005839),Molecular Function: endopeptidase activity (GO:0004175),Molecular Function: threonine-type endopeptidase activity (GO:0004298);InterPro=Peptidase T1A%2C proteasome beta-subunit (IPR000243),Proteasome%2C subunit alpha/beta (IPR001353),Proteasome%2C beta-type subunit%2C conserved site (IPR016050),Proteasome B-type subunit (IPR023333);NIAS_FLcDNA=006-302-F11,J033128K18;Oryzabase=14500;Expression=AK103425;TENOR=Os02t0770000-02;KEGG=Os02t0770000-02 (EC:3.4.25.1);B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	32468448	32468562	.	-	.	Parent=Os02t0770000-02
Chr02	irgsp1_rep	CDS	32468306	32468447	.	-	0	Parent=Os02t0770000-02
Chr02	irgsp1_rep	CDS	32467553	32467629	.	-	2	Parent=Os02t0770000-02
Chr02	irgsp1_rep	CDS	32467181	32467236	.	-	0	Parent=Os02t0770000-02
Chr02	irgsp1_rep	CDS	32466983	32467055	.	-	1	Parent=Os02t0770000-02
Chr02	irgsp1_rep	CDS	32466687	32466798	.	-	0	Parent=Os02t0770000-02
Chr02	irgsp1_rep	CDS	32466214	32466287	.	-	2	Parent=Os02t0770000-02
Chr02	irgsp1_rep	CDS	32465924	32465998	.	-	0	Parent=Os02t0770000-02
Chr02	irgsp1_rep	CDS	32465242	32465373	.	-	0	Parent=Os02t0770000-02
Chr02	irgsp1_rep	three_prime_UTR	32465058	32465241	.	-	.	Parent=Os02t0770000-02
Chr02	irgsp1_rep	mRNA	32469587	32472658	.	-	.	ID=Os02t0770100-01;Name=Os02t0770100-01;Locus_id=Os02g0770100;Note=WD40 repeat domain containing protein.;Transcript_evidence=AK111651 (DDBJ%2C Best hit);ORF_evidence=Q6ZH55 (UniProt);NIAS_FLcDNA=J013134B02;Expression=AK111651;TENOR=Os02t0770100-01;KEGG=Os02t0770100-01
Chr02	irgsp1_rep	five_prime_UTR	32472657	32472658	.	-	.	Parent=Os02t0770100-01
Chr02	irgsp1_rep	CDS	32472321	32472656	.	-	0	Parent=Os02t0770100-01
Chr02	irgsp1_rep	CDS	32471752	32471808	.	-	0	Parent=Os02t0770100-01
Chr02	irgsp1_rep	CDS	32471626	32471661	.	-	0	Parent=Os02t0770100-01
Chr02	irgsp1_rep	CDS	32470879	32471547	.	-	0	Parent=Os02t0770100-01
Chr02	irgsp1_rep	CDS	32470257	32470793	.	-	0	Parent=Os02t0770100-01
Chr02	irgsp1_rep	three_prime_UTR	32469587	32470256	.	-	.	Parent=Os02t0770100-01
Chr02	irgsp1_rep	mRNA	32474113	32476128	.	-	.	ID=Os02t0770300-01;Name=Os02t0770300-01;Locus_id=Os02g0770300;Note=Conserved hypothetical protein.;Transcript_evidence=AK064845 (DDBJ%2C Best hit);ORF_evidence=XP_002454738.1 (RefSeq);NIAS_FLcDNA=J013000G09;TENOR=Os02t0770300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	32475141	32476128	.	-	.	Parent=Os02t0770300-01
Chr02	irgsp1_rep	CDS	32474919	32475140	.	-	0	Parent=Os02t0770300-01
Chr02	irgsp1_rep	three_prime_UTR	32474113	32474918	.	-	.	Parent=Os02t0770300-01
Chr02	irgsp1_rep	mRNA	32488795	32491584	.	+	.	ID=Os02t0770500-00;Name=Os02t0770500-00;Locus_id=Os02g0770500;CGSNL Gene Symbol=WRKY32;CGSNL Gene Name=WRKY GENE 32;Oryzabase Gene Symbol Synonym(s)=OsWRKY32;Oryzabase Gene Name Synonym(s)=Rice WRKY gene32;Note=Similar to WRKY transcription factor 32.;Transcript_evidence=AK363247 (DDBJ);ORF_evidence=Q6IEP9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6545;TENOR=Os02t0770500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	32488795	32489445	.	+	0	Parent=Os02t0770500-00
Chr02	irgsp1_rep	CDS	32489610	32489759	.	+	0	Parent=Os02t0770500-00
Chr02	irgsp1_rep	CDS	32490005	32490442	.	+	0	Parent=Os02t0770500-00
Chr02	irgsp1_rep	CDS	32490545	32490658	.	+	0	Parent=Os02t0770500-00
Chr02	irgsp1_rep	CDS	32490763	32491359	.	+	0	Parent=Os02t0770500-00
Chr02	irgsp1_rep	three_prime_UTR	32491360	32491584	.	+	.	Parent=Os02t0770500-00
Chr02	irgsp1_rep	mRNA	32495232	32499085	.	+	.	ID=Os02t0770600-01;Name=Os02t0770600-01;Locus_id=Os02g0770600;Oryzabase Gene Name Synonym(s)=DUF1644 family protein;Note=Protein of unknown function DUF1644 family protein.;Transcript_evidence=AK066977 (DDBJ%2C Best hit);ORF_evidence=Q2Z1Y7 (UniProt);InterPro=Protein of unknown function DUF1644 (IPR012866),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J013089K11;Oryzabase=19984;Expression=AK066977;TENOR=Os02t0770600-01;KEGG=Os02t0770600-01
Chr02	irgsp1_rep	five_prime_UTR	32495232	32495379	.	+	.	Parent=Os02t0770600-01
Chr02	irgsp1_rep	five_prime_UTR	32497750	32497761	.	+	.	Parent=Os02t0770600-01
Chr02	irgsp1_rep	CDS	32497762	32498799	.	+	0	Parent=Os02t0770600-01
Chr02	irgsp1_rep	three_prime_UTR	32498800	32499085	.	+	.	Parent=Os02t0770600-01
Chr02	irgsp1_rep	mRNA	32495260	32499115	.	+	.	ID=Os02t0770600-02;Name=Os02t0770600-02;Locus_id=Os02g0770600;Oryzabase Gene Name Synonym(s)=DUF1644 family protein;Note=Protein of unknown function DUF1644 family protein.;Transcript_evidence=AK101234 (DDBJ%2C Best hit);ORF_evidence=Q2Z1Y7 (UniProt);InterPro=Protein of unknown function DUF1644 (IPR012866),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J033031J23;Oryzabase=19984;Expression=AK101234;TENOR=Os02t0770600-02;KEGG=Os02t0770600-02
Chr02	irgsp1_rep	five_prime_UTR	32495260	32497716	.	+	.	Parent=Os02t0770600-02
Chr02	irgsp1_rep	CDS	32497717	32498799	.	+	0	Parent=Os02t0770600-02
Chr02	irgsp1_rep	three_prime_UTR	32498800	32499115	.	+	.	Parent=Os02t0770600-02
Chr02	irgsp1_rep	mRNA	32499213	32507151	.	-	.	ID=Os02t0770700-01;Name=Os02t0770700-01;Locus_id=Os02g0770700;Oryzabase Gene Name Synonym(s)=Peptidase family C50;Note=Peptidase C50%2C separase domain containing protein.;Transcript_evidence=AK106494 (DDBJ%2C Best hit);ORF_evidence=B9F3G4 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Cellular Component: nucleus (GO:0005634),Molecular Function: peptidase activity (GO:0008233);InterPro=Peptidase C50%2C separase (IPR005314);NIAS_FLcDNA=002-105-C02;Oryzabase=20427;TENOR=Os02t0770700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	32507151	32507151	.	-	.	Parent=Os02t0770700-01
Chr02	irgsp1_rep	CDS	32507054	32507150	.	-	0	Parent=Os02t0770700-01
Chr02	irgsp1_rep	CDS	32505819	32506661	.	-	2	Parent=Os02t0770700-01
Chr02	irgsp1_rep	CDS	32504985	32505228	.	-	2	Parent=Os02t0770700-01
Chr02	irgsp1_rep	CDS	32504781	32504883	.	-	1	Parent=Os02t0770700-01
Chr02	irgsp1_rep	CDS	32504410	32504601	.	-	0	Parent=Os02t0770700-01
Chr02	irgsp1_rep	CDS	32504275	32504330	.	-	0	Parent=Os02t0770700-01
Chr02	irgsp1_rep	CDS	32503593	32503822	.	-	1	Parent=Os02t0770700-01
Chr02	irgsp1_rep	CDS	32503259	32503505	.	-	2	Parent=Os02t0770700-01
Chr02	irgsp1_rep	CDS	32502720	32503113	.	-	1	Parent=Os02t0770700-01
Chr02	irgsp1_rep	CDS	32501652	32501891	.	-	0	Parent=Os02t0770700-01
Chr02	irgsp1_rep	CDS	32501058	32501145	.	-	0	Parent=Os02t0770700-01
Chr02	irgsp1_rep	CDS	32499693	32500201	.	-	2	Parent=Os02t0770700-01
Chr02	irgsp1_rep	three_prime_UTR	32499213	32499692	.	-	.	Parent=Os02t0770700-01
Chr02	irgsp1_rep	mRNA	32513749	32517155	.	-	.	ID=Os02t0770800-01;Name=Os02t0770800-01;Locus_id=Os02g0770800;RAP-DB Gene Symbol Synonym(s)=OsNR2;RAP-DB Gene Name Synonym(s)=nitrate reductase 2;Oryzabase Gene Symbol Synonym(s)=OsNIA1%2C OsNia1%2C NIA1%2C Nia1%2C OsNR%2C NR%2C OsNR2%2C NR2;Oryzabase Gene Name Synonym(s)=nitrate reductase%2C nitrate reductase 2%2C NO3-reductase 2%2C NADH/NADPH-dependent NO3-reductase 2;Note=NADH/NADPH-dependent nitrate reductase;Transcript_evidence=AK102178,AK102602;ORF_evidence=Q6ZHH7;GO=Biological Process: nitric oxide biosynthetic process (GO:0006809),Biological Process: nitrate assimilation (GO:0042128),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: heme binding (GO:0020037),Molecular Function: molybdenum ion binding (GO:0030151),Molecular Function: molybdopterin cofactor binding (GO:0043546),Molecular Function: nitrate reductase (NADPH) activity (GO:0050464);InterPro=Oxidoreductase%2C molybdopterin-binding domain superfamily (IPR036374),Immunoglobulin E-set (IPR014756),CytoChrome b5-like heme/steroid binding domain superfamily (IPR036400),Riboflavin synthase-like beta-barrel (IPR017938),Ferredoxin-NADP reductase (FNR)%2C nucleotide-binding domain (IPR039261),Eukaryotic molybdopterin oxidoreductase (IPR008335),Nitrate reductase NADH dependent (IPR012137),NADH:cytoChrome b5 reductase-like (IPR001834),Oxidoreductase%2C molybdopterin-binding domain (IPR000572),Moybdenum cofactor oxidoreductase%2C dimerisation (IPR005066),CytoChrome b5-like heme/steroid binding domain (IPR001199),Oxidoreductase FAD/NAD(P)-binding (IPR001433),Flavoprotein pyridine nucleotide cytoChrome reductase (IPR001709),FAD-binding domain%2C ferredoxin reductase-type (IPR017927),Flavoprotein pyridine nucleotide cytoChrome reductase-like%2C FAD-binding domain (IPR008333),Oxidoreductase%2C molybdopterin binding site (IPR022407),CytoChrome b5%2C heme-binding site (IPR018506);NIAS_FLcDNA=J033086L13,J033098M24;Manual Curation=November 18%2C 2019;Literature_PMID=31729387;Oryzabase=9918;Expression=AK102178;TENOR=Os02t0770800-01;KEGG=Os02t0770800-01 (EC:1.7.1.2)
Chr02	irgsp1_rep	five_prime_UTR	32517029	32517155	.	-	.	Parent=Os02t0770800-01
Chr02	irgsp1_rep	CDS	32516071	32517028	.	-	0	Parent=Os02t0770800-01
Chr02	irgsp1_rep	CDS	32515828	32515968	.	-	2	Parent=Os02t0770800-01
Chr02	irgsp1_rep	CDS	32515426	32515658	.	-	2	Parent=Os02t0770800-01
Chr02	irgsp1_rep	CDS	32514002	32515339	.	-	0	Parent=Os02t0770800-01
Chr02	irgsp1_rep	three_prime_UTR	32513749	32514001	.	-	.	Parent=Os02t0770800-01
Chr02	irgsp1_rep	mRNA	32528143	32533583	.	-	.	ID=Os02t0771100-01;Name=Os02t0771100-01;Locus_id=Os02g0771100;RAP-DB Gene Symbol Synonym(s)=PPS%2C COP1;RAP-DB Gene Name Synonym(s)=PETER PAN SYNDROME%2C CONSTITUTIVE PHOTOMORPHOGENIC1;CGSNL Gene Symbol=PPS;CGSNL Gene Name=PETER PAN SYNDROME;Oryzabase Gene Symbol Synonym(s)=OsWD40-55%2C OsCOP1%2C COP1;Oryzabase Gene Name Synonym(s)=COP1 ortholog%2C CONSTITUTIVE PHOTOMORPHOGENIC 1;Note=Ortholog of Arabidopsis CONSTITUTIVE PHOTOMORPHOGENIC1%2C Regulation of the onset of the adult phase%2C  Regulation of vegetative-reproductive phase change and the time of flowering;Transcript_evidence=AK102740,AB634500;ORF_evidence=Q6ZHH4;GO=Molecular Function: protein binding (GO:0005515);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat (IPR001680),Zinc finger%2C RING-type%2C conserved site (IPR017907),WD40 repeat%2C conserved site (IPR019775);NIAS_FLcDNA=J033106E23;Manual Curation=September 11%2C 2017;Literature_PMID=21705640;Oryzabase=8918;TENOR=Os02t0771100-01
Chr02	irgsp1_rep	five_prime_UTR	32533320	32533583	.	-	.	Parent=Os02t0771100-01
Chr02	irgsp1_rep	CDS	32532978	32533319	.	-	0	Parent=Os02t0771100-01
Chr02	irgsp1_rep	CDS	32532286	32532363	.	-	0	Parent=Os02t0771100-01
Chr02	irgsp1_rep	CDS	32531657	32531812	.	-	0	Parent=Os02t0771100-01
Chr02	irgsp1_rep	CDS	32531182	32531541	.	-	0	Parent=Os02t0771100-01
Chr02	irgsp1_rep	CDS	32530889	32531043	.	-	0	Parent=Os02t0771100-01
Chr02	irgsp1_rep	CDS	32530720	32530785	.	-	1	Parent=Os02t0771100-01
Chr02	irgsp1_rep	CDS	32530279	32530357	.	-	1	Parent=Os02t0771100-01
Chr02	irgsp1_rep	CDS	32530031	32530186	.	-	0	Parent=Os02t0771100-01
Chr02	irgsp1_rep	CDS	32529840	32529938	.	-	0	Parent=Os02t0771100-01
Chr02	irgsp1_rep	CDS	32529467	32529571	.	-	0	Parent=Os02t0771100-01
Chr02	irgsp1_rep	CDS	32529212	32529391	.	-	0	Parent=Os02t0771100-01
Chr02	irgsp1_rep	CDS	32528731	32528841	.	-	0	Parent=Os02t0771100-01
Chr02	irgsp1_rep	CDS	32528425	32528595	.	-	0	Parent=Os02t0771100-01
Chr02	irgsp1_rep	three_prime_UTR	32528143	32528424	.	-	.	Parent=Os02t0771100-01
Chr02	irgsp1_rep	mRNA	32528080	32533077	.	-	.	ID=Os02t0771100-02;Name=Os02t0771100-02;Locus_id=Os02g0771100;CGSNL Gene Symbol=PPS;CGSNL Gene Name=PETER PAN SYNDROME;Oryzabase Gene Symbol Synonym(s)=OsWD40-55%2C OsCOP1%2C COP1;Oryzabase Gene Name Synonym(s)=COP1 ortholog%2C CONSTITUTIVE PHOTOMORPHOGENIC 1;Note=Similar to CopI.;Transcript_evidence=AK112098 (DDBJ%2C Best hit);ORF_evidence=Q947M8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=002-108-E05;Oryzabase=8918;Expression=AK112098;TENOR=Os02t0771100-02;KEGG=Os02t0771100-02 (EC:6.3.2.19)
Chr02	irgsp1_rep	five_prime_UTR	32533077	32533077	.	-	.	Parent=Os02t0771100-02
Chr02	irgsp1_rep	CDS	32532978	32533076	.	-	0	Parent=Os02t0771100-02
Chr02	irgsp1_rep	CDS	32532286	32532363	.	-	0	Parent=Os02t0771100-02
Chr02	irgsp1_rep	CDS	32531657	32531812	.	-	0	Parent=Os02t0771100-02
Chr02	irgsp1_rep	CDS	32531182	32531541	.	-	0	Parent=Os02t0771100-02
Chr02	irgsp1_rep	CDS	32530889	32531043	.	-	0	Parent=Os02t0771100-02
Chr02	irgsp1_rep	CDS	32530720	32530785	.	-	1	Parent=Os02t0771100-02
Chr02	irgsp1_rep	CDS	32530279	32530357	.	-	1	Parent=Os02t0771100-02
Chr02	irgsp1_rep	CDS	32530031	32530186	.	-	0	Parent=Os02t0771100-02
Chr02	irgsp1_rep	CDS	32529840	32529938	.	-	0	Parent=Os02t0771100-02
Chr02	irgsp1_rep	CDS	32529467	32529571	.	-	0	Parent=Os02t0771100-02
Chr02	irgsp1_rep	CDS	32529212	32529391	.	-	0	Parent=Os02t0771100-02
Chr02	irgsp1_rep	CDS	32528731	32528841	.	-	0	Parent=Os02t0771100-02
Chr02	irgsp1_rep	CDS	32528425	32528595	.	-	0	Parent=Os02t0771100-02
Chr02	irgsp1_rep	three_prime_UTR	32528080	32528424	.	-	.	Parent=Os02t0771100-02
Chr02	irgsp1_rep	mRNA	32528145	32533403	.	-	.	ID=Os02t0771100-03;Name=Os02t0771100-03;Locus_id=Os02g0771100;CGSNL Gene Symbol=PPS;CGSNL Gene Name=PETER PAN SYNDROME;Oryzabase Gene Symbol Synonym(s)=OsWD40-55%2C OsCOP1%2C COP1;Oryzabase Gene Name Synonym(s)=COP1 ortholog%2C CONSTITUTIVE PHOTOMORPHOGENIC 1;Note=Similar to COP1 (Fragment).;Transcript_evidence=AK111614 (DDBJ%2C Best hit);ORF_evidence=Q947M8 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=WD40 repeat (IPR001680),Zinc finger%2C RING-type (IPR001841),WD40 repeat-like-containing domain (IPR011046),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),WD40/YVTN repeat-like-containing domain (IPR015943),Zinc finger%2C RING-type%2C conserved site (IPR017907),WD40-repeat-containing domain (IPR017986),Zinc finger%2C C3HC4 RING-type (IPR018957),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J013104O14;Oryzabase=8918;TENOR=Os02t0771100-03
Chr02	irgsp1_rep	five_prime_UTR	32533320	32533403	.	-	.	Parent=Os02t0771100-03
Chr02	irgsp1_rep	CDS	32532978	32533319	.	-	0	Parent=Os02t0771100-03
Chr02	irgsp1_rep	CDS	32532286	32532363	.	-	0	Parent=Os02t0771100-03
Chr02	irgsp1_rep	CDS	32531657	32531812	.	-	0	Parent=Os02t0771100-03
Chr02	irgsp1_rep	CDS	32531182	32531541	.	-	0	Parent=Os02t0771100-03
Chr02	irgsp1_rep	CDS	32530889	32531043	.	-	0	Parent=Os02t0771100-03
Chr02	irgsp1_rep	CDS	32530720	32530785	.	-	1	Parent=Os02t0771100-03
Chr02	irgsp1_rep	CDS	32530279	32530357	.	-	1	Parent=Os02t0771100-03
Chr02	irgsp1_rep	CDS	32530031	32530186	.	-	0	Parent=Os02t0771100-03
Chr02	irgsp1_rep	CDS	32529840	32529938	.	-	0	Parent=Os02t0771100-03
Chr02	irgsp1_rep	CDS	32529467	32529571	.	-	0	Parent=Os02t0771100-03
Chr02	irgsp1_rep	CDS	32529212	32529391	.	-	0	Parent=Os02t0771100-03
Chr02	irgsp1_rep	CDS	32528731	32528841	.	-	0	Parent=Os02t0771100-03
Chr02	irgsp1_rep	CDS	32528425	32528595	.	-	0	Parent=Os02t0771100-03
Chr02	irgsp1_rep	three_prime_UTR	32528145	32528424	.	-	.	Parent=Os02t0771100-03
Chr02	irgsp1_rep	mRNA	32535707	32536892	.	-	.	ID=Os02t0771200-01;Name=Os02t0771200-01;Locus_id=Os02g0771200;Note=Protein of unknown function DUF573 domain containing protein.;Transcript_evidence=AK066823 (DDBJ%2C Best hit);ORF_evidence=A2XA27 (UniProt);InterPro=Protein of unknown function DUF573 (IPR007592);NIAS_FLcDNA=J013075K03;Expression=AK066823;TENOR=Os02t0771200-01;KEGG=Os02t0771200-01
Chr02	irgsp1_rep	five_prime_UTR	32536813	32536892	.	-	.	Parent=Os02t0771200-01
Chr02	irgsp1_rep	CDS	32535862	32536812	.	-	0	Parent=Os02t0771200-01
Chr02	irgsp1_rep	three_prime_UTR	32535707	32535861	.	-	.	Parent=Os02t0771200-01
Chr02	irgsp1_rep	mRNA	32535375	32536365	.	-	.	ID=Os02t0771200-02;Name=Os02t0771200-02;Locus_id=Os02g0771200;Note=Hypothetical conserved gene.;Transcript_evidence=AK071059 (DDBJ%2C Best hit);ORF_evidence=A2XA27 (UniProt);NIAS_FLcDNA=J023081E11;Expression=AK071059;TENOR=Os02t0771200-02;KEGG=Os02t0771200-02
Chr02	irgsp1_rep	CDS	32535862	32536365	.	-	0	Parent=Os02t0771200-02
Chr02	irgsp1_rep	three_prime_UTR	32535375	32535861	.	-	.	Parent=Os02t0771200-02
Chr02	irgsp1_rep	mRNA	32538362	32542086	.	-	.	ID=Os02t0771400-00;Name=Os02t0771400-00;Locus_id=Os02g0771400;Oryzabase Gene Symbol Synonym(s)=OsPFA-DSP2%2C OsPP39;Oryzabase Gene Name Synonym(s)=plant and fungi atypical dual-specificity phosphatase 2%2C Protein phosphatase 39;Note=Protein-tyrosine phosphatase%2C SIW14-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B6TUQ6 (UniProt);GO=Biological Process: dephosphorylation (GO:0016311),Molecular Function: protein tyrosine phosphatase activity (GO:0004725),Molecular Function: phosphatase activity (GO:0016791);InterPro=Protein-tyrosine phosphatase%2C SIW14-like (IPR004861),Protein-tyrosine phosphatase%2C active site (IPR016130),Protein-tyrosine phosphatase%2C dual specificity phosphatase%2C eukaryotic (IPR020428);Oryzabase=10260;TENOR=Os02t0771400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	32541842	32542086	.	-	0	Parent=Os02t0771400-00
Chr02	irgsp1_rep	CDS	32541636	32541729	.	-	1	Parent=Os02t0771400-00
Chr02	irgsp1_rep	CDS	32538769	32538826	.	-	0	Parent=Os02t0771400-00
Chr02	irgsp1_rep	CDS	32538639	32538682	.	-	2	Parent=Os02t0771400-00
Chr02	irgsp1_rep	CDS	32538362	32538535	.	-	0	Parent=Os02t0771400-00
Chr02	irgsp1_rep	mRNA	32545763	32547260	.	-	.	ID=Os02t0771450-00;Name=Os02t0771450-00;Locus_id=Os02g0771450;Note=Hypothetical conserved gene.;Transcript_evidence=AK109837 (DDBJ%2C Secondary hit);ORF_evidence=B8A8B2 (UniProt);Expression=AK109837;TENOR=Os02t0771450-00;KEGG=Os02t0771450-00
Chr02	irgsp1_rep	five_prime_UTR	32547071	32547260	.	-	.	Parent=Os02t0771450-00
Chr02	irgsp1_rep	CDS	32546720	32547070	.	-	0	Parent=Os02t0771450-00
Chr02	irgsp1_rep	three_prime_UTR	32545763	32546719	.	-	.	Parent=Os02t0771450-00
Chr02	irgsp1_rep	mRNA	32545921	32546622	.	+	.	ID=Os02t0771500-01;Name=Os02t0771500-01;Locus_id=Os02g0771500;Note=Conserved hypothetical protein.;Transcript_evidence=AK062335 (DDBJ%2C Best hit),AK106018 (DDBJ%2C Best hit);ORF_evidence=B9F3G5 (UniProt);NIAS_FLcDNA=001-101-E05,001-206-B09;TENOR=Os02t0771500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	32545921	32545991	.	+	.	Parent=Os02t0771500-01
Chr02	irgsp1_rep	CDS	32545992	32546207	.	+	0	Parent=Os02t0771500-01
Chr02	irgsp1_rep	three_prime_UTR	32546208	32546622	.	+	.	Parent=Os02t0771500-01
Chr02	irgsp1_rep	mRNA	32558636	32562547	.	+	.	ID=Os02t0771600-01;Name=Os02t0771600-01;Locus_id=Os02g0771600;CGSNL Gene Symbol=ACO3;CGSNL Gene Name=AMINOCYCLOPROPANE-1-CARBOXYLIC ACID OXIDASE 3;Oryzabase Gene Symbol Synonym(s)=OsACO3%2C ACO2%2C OsACO2;Oryzabase Gene Name Synonym(s)=ACC oxidase 3;Note=Similar to 1-aminocyclopropane-1-carboxylate oxidase (Fragment).;Transcript_evidence=AK066805 (DDBJ%2C Best hit);ORF_evidence=O65031 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=J013078A14;Oryzabase=9073;Expression=AK066805;TENOR=Os02t0771600-01;KEGG=Os02t0771600-01
Chr02	irgsp1_rep	five_prime_UTR	32558636	32560396	.	+	.	Parent=Os02t0771600-01
Chr02	irgsp1_rep	CDS	32560397	32560510	.	+	0	Parent=Os02t0771600-01
Chr02	irgsp1_rep	CDS	32560832	32561061	.	+	0	Parent=Os02t0771600-01
Chr02	irgsp1_rep	CDS	32561654	32562275	.	+	1	Parent=Os02t0771600-01
Chr02	irgsp1_rep	three_prime_UTR	32562276	32562547	.	+	.	Parent=Os02t0771600-01
Chr02	irgsp1_rep	mRNA	32560319	32562547	.	+	.	ID=Os02t0771600-02;Name=Os02t0771600-02;Locus_id=Os02g0771600;RAP-DB Gene Symbol Synonym(s)=ACO3%2C OsACO3;RAP-DB Gene Name Synonym(s)=AMINOCYCLOPROPANE-1-CARBOXYLIC ACID OXIDASE 3%2C ACC oxidase 3;CGSNL Gene Symbol=ACO3;CGSNL Gene Name=AMINOCYCLOPROPANE-1-CARBOXYLIC ACID OXIDASE 3;Oryzabase Gene Symbol Synonym(s)=OsACO3%2C ACO2%2C OsACO2;Oryzabase Gene Name Synonym(s)=ACC oxidase 3;Note=ACC oxidase%2C Ethylene biosynthesis;Transcript_evidence=AK071557,AK103969;ORF_evidence=Q6ZHG2;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Isopenicillin N synthase-like (IPR027443),Non-haem dioxygenase N-terminal domain (IPR026992),Oxoglutarate/iron-dependent dioxygenase (IPR005123);NIAS_FLcDNA=001-016-B02, J023099D13;Manual Curation=November 26%2C 2009;Literature_PMID=17012402;Oryzabase=9073;Expression=AK103969;TENOR=Os02t0771600-02;KEGG=Os02t0771600-02
Chr02	irgsp1_rep	five_prime_UTR	32560319	32560396	.	+	.	Parent=Os02t0771600-02
Chr02	irgsp1_rep	CDS	32560397	32560510	.	+	0	Parent=Os02t0771600-02
Chr02	irgsp1_rep	CDS	32560832	32561061	.	+	0	Parent=Os02t0771600-02
Chr02	irgsp1_rep	CDS	32561654	32562275	.	+	1	Parent=Os02t0771600-02
Chr02	irgsp1_rep	three_prime_UTR	32562276	32562547	.	+	.	Parent=Os02t0771600-02
Chr02	irgsp1_rep	mRNA	32567076	32569028	.	+	.	ID=Os02t0771666-00;Name=Os02t0771666-00;Locus_id=Os02g0771666;Note=Hypothetical gene.;Transcript_evidence=BT019229 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0771666-00;KEGG=Os02t0771666-00
Chr02	irgsp1_rep	five_prime_UTR	32567076	32567236	.	+	.	Parent=Os02t0771666-00
Chr02	irgsp1_rep	CDS	32567237	32567474	.	+	0	Parent=Os02t0771666-00
Chr02	irgsp1_rep	CDS	32568444	32568466	.	+	2	Parent=Os02t0771666-00
Chr02	irgsp1_rep	three_prime_UTR	32568467	32569028	.	+	.	Parent=Os02t0771666-00
Chr02	irgsp1_rep	mRNA	32567078	32570042	.	-	.	ID=Os02t0771700-01;Name=Os02t0771700-01;Locus_id=Os02g0771700;CGSNL Gene Symbol=GNS9;CGSNL Gene Name=BETA-1%2C3-GLUCANASE 9;Oryzabase Gene Symbol Synonym(s)=Gns9%2C OsGns9;Oryzabase Gene Name Synonym(s)=beta-1%2C 3-glucanase 9;Note=Glycoside hydrolase%2C family 17 protein.;Transcript_evidence=AK058571 (DDBJ%2C Best hit),AK102185 (DDBJ%2C Best hit);ORF_evidence=Q9ZNY6 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-017-E08,J033086N13;Oryzabase=13927;Expression=AK058571;TENOR=Os02t0771700-01;KEGG=Os02t0771700-01
Chr02	irgsp1_rep	five_prime_UTR	32569951	32570042	.	-	.	Parent=Os02t0771700-01
Chr02	irgsp1_rep	CDS	32569878	32569950	.	-	0	Parent=Os02t0771700-01
Chr02	irgsp1_rep	CDS	32568444	32569802	.	-	2	Parent=Os02t0771700-01
Chr02	irgsp1_rep	CDS	32567440	32567474	.	-	2	Parent=Os02t0771700-01
Chr02	irgsp1_rep	three_prime_UTR	32567078	32567439	.	-	.	Parent=Os02t0771700-01
Chr02	irgsp1_rep	mRNA	32575339	32580717	.	-	.	ID=Os02t0771800-01;Name=Os02t0771800-01;Locus_id=Os02g0771800;Note=Similar to predicted protein.;Transcript_evidence=AK243530 (DDBJ%2C Best hit);ORF_evidence=B8AJ71 (UniProt);NIAS_FLcDNA=J100076I12;TENOR=Os02t0771800-01;KEGG=Os02t0771800-01
Chr02	irgsp1_rep	five_prime_UTR	32580398	32580717	.	-	.	Parent=Os02t0771800-01
Chr02	irgsp1_rep	CDS	32580377	32580397	.	-	0	Parent=Os02t0771800-01
Chr02	irgsp1_rep	CDS	32580186	32580259	.	-	0	Parent=Os02t0771800-01
Chr02	irgsp1_rep	CDS	32578900	32579041	.	-	1	Parent=Os02t0771800-01
Chr02	irgsp1_rep	CDS	32578464	32578751	.	-	0	Parent=Os02t0771800-01
Chr02	irgsp1_rep	CDS	32578232	32578385	.	-	0	Parent=Os02t0771800-01
Chr02	irgsp1_rep	CDS	32577217	32578161	.	-	2	Parent=Os02t0771800-01
Chr02	irgsp1_rep	CDS	32576856	32577094	.	-	2	Parent=Os02t0771800-01
Chr02	irgsp1_rep	CDS	32576702	32576775	.	-	0	Parent=Os02t0771800-01
Chr02	irgsp1_rep	CDS	32576302	32576413	.	-	1	Parent=Os02t0771800-01
Chr02	irgsp1_rep	CDS	32575763	32575786	.	-	0	Parent=Os02t0771800-01
Chr02	irgsp1_rep	three_prime_UTR	32575339	32575762	.	-	.	Parent=Os02t0771800-01
Chr02	irgsp1_rep	mRNA	32577692	32578623	.	+	.	ID=Os02t0771900-00;Name=Os02t0771900-00;Locus_id=Os02g0771900;Note=Non-protein coding transcript.;Transcript_evidence=FP091874 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0771900-00
Chr02	irgsp1_rep	exon	32577692	32577811	.	+	.	Parent=Os02t0771900-00
Chr02	irgsp1_rep	exon	32578075	32578623	.	+	.	Parent=Os02t0771900-00
Chr02	irgsp1_rep	mRNA	32584567	32591373	.	+	.	ID=Os02t0772000-00;Name=Os02t0772000-00;Locus_id=Os02g0772000;Note=Similar to global transcription factor group.;Transcript_evidence=AK334486 (DDBJ);ORF_evidence=XP_002879484.1 (RefSeq);GO=Biological Process: positive regulation of transcription elongation from RNA polymerase II promoter (GO:0032968);InterPro=Transcription elongation factor Spt5%2C NGN domain (IPR005100),Transcription antitermination protein%2C NusG%2C N-terminal (IPR006645);TENOR=Os02t0772000-00;KEGG=Os02t0772000-00
Chr02	irgsp1_rep	CDS	32584567	32584894	.	+	0	Parent=Os02t0772000-00
Chr02	irgsp1_rep	CDS	32585855	32586096	.	+	2	Parent=Os02t0772000-00
Chr02	irgsp1_rep	CDS	32586188	32586331	.	+	0	Parent=Os02t0772000-00
Chr02	irgsp1_rep	CDS	32586396	32586557	.	+	0	Parent=Os02t0772000-00
Chr02	irgsp1_rep	CDS	32586636	32586719	.	+	0	Parent=Os02t0772000-00
Chr02	irgsp1_rep	CDS	32587035	32587108	.	+	0	Parent=Os02t0772000-00
Chr02	irgsp1_rep	CDS	32587190	32587196	.	+	1	Parent=Os02t0772000-00
Chr02	irgsp1_rep	three_prime_UTR	32587197	32587546	.	+	.	Parent=Os02t0772000-00
Chr02	irgsp1_rep	three_prime_UTR	32587627	32587782	.	+	.	Parent=Os02t0772000-00
Chr02	irgsp1_rep	three_prime_UTR	32587875	32587972	.	+	.	Parent=Os02t0772000-00
Chr02	irgsp1_rep	three_prime_UTR	32588062	32588122	.	+	.	Parent=Os02t0772000-00
Chr02	irgsp1_rep	three_prime_UTR	32588213	32588352	.	+	.	Parent=Os02t0772000-00
Chr02	irgsp1_rep	three_prime_UTR	32588483	32588626	.	+	.	Parent=Os02t0772000-00
Chr02	irgsp1_rep	three_prime_UTR	32588700	32588799	.	+	.	Parent=Os02t0772000-00
Chr02	irgsp1_rep	three_prime_UTR	32588909	32589079	.	+	.	Parent=Os02t0772000-00
Chr02	irgsp1_rep	three_prime_UTR	32589297	32589345	.	+	.	Parent=Os02t0772000-00
Chr02	irgsp1_rep	three_prime_UTR	32589419	32589510	.	+	.	Parent=Os02t0772000-00
Chr02	irgsp1_rep	three_prime_UTR	32590212	32590285	.	+	.	Parent=Os02t0772000-00
Chr02	irgsp1_rep	three_prime_UTR	32590408	32590456	.	+	.	Parent=Os02t0772000-00
Chr02	irgsp1_rep	three_prime_UTR	32590566	32590800	.	+	.	Parent=Os02t0772000-00
Chr02	irgsp1_rep	three_prime_UTR	32590932	32591032	.	+	.	Parent=Os02t0772000-00
Chr02	irgsp1_rep	three_prime_UTR	32591121	32591373	.	+	.	Parent=Os02t0772000-00
Chr02	irgsp1_rep	mRNA	32591800	32593204	.	+	.	ID=Os02t0772100-01;Name=Os02t0772100-01;Locus_id=Os02g0772100;Note=Conserved hypothetical protein.;Transcript_evidence=AK064111 (DDBJ%2C Best hit);ORF_evidence=Q658D1 (UniProt);NIAS_FLcDNA=002-101-G12;TENOR=Os02t0772100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	32591800	32593046	.	+	.	Parent=Os02t0772100-01
Chr02	irgsp1_rep	CDS	32593047	32593204	.	+	0	Parent=Os02t0772100-01
Chr02	irgsp1_rep	mRNA	32592142	32592761	.	-	.	ID=Os02t0772150-00;Name=Os02t0772150-00;Locus_id=Os02g0772150;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2XA36 (UniProt);TENOR=Os02t0772150-00
Chr02	irgsp1_rep	CDS	32592615	32592761	.	-	0	Parent=Os02t0772150-00
Chr02	irgsp1_rep	CDS	32592142	32592537	.	-	0	Parent=Os02t0772150-00
Chr02	irgsp1_rep	mRNA	32595489	32595728	.	-	.	ID=Os02t0772200-00;Name=Os02t0772200-00;Locus_id=Os02g0772200;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001173162.1 (RefSeq);TENOR=Os02t0772200-00;KEGG=Os02t0772200-00
Chr02	irgsp1_rep	CDS	32595489	32595728	.	-	0	Parent=Os02t0772200-00
Chr02	irgsp1_rep	mRNA	32597495	32600347	.	+	.	ID=Os02t0772300-01;Name=Os02t0772300-01;Locus_id=Os02g0772300;Note=Acyl-CoA N-acyltransferase domain containing protein.;Transcript_evidence=AK071492 (DDBJ%2C Best hit);ORF_evidence=B6TH38 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: N-acetyltransferase activity (GO:0008080);InterPro=GCN5-related N-acetyltransferase (GNAT) domain (IPR000182),Acyl-CoA N-acyltransferase (IPR016181);NIAS_FLcDNA=J023099E03;Expression=AK071492;TENOR=Os02t0772300-01;KEGG=Os02t0772300-01
Chr02	irgsp1_rep	five_prime_UTR	32597495	32597555	.	+	.	Parent=Os02t0772300-01
Chr02	irgsp1_rep	CDS	32597556	32597642	.	+	0	Parent=Os02t0772300-01
Chr02	irgsp1_rep	CDS	32598100	32598202	.	+	0	Parent=Os02t0772300-01
Chr02	irgsp1_rep	CDS	32598432	32598511	.	+	2	Parent=Os02t0772300-01
Chr02	irgsp1_rep	CDS	32598625	32598954	.	+	0	Parent=Os02t0772300-01
Chr02	irgsp1_rep	CDS	32599169	32599242	.	+	0	Parent=Os02t0772300-01
Chr02	irgsp1_rep	CDS	32599325	32599410	.	+	1	Parent=Os02t0772300-01
Chr02	irgsp1_rep	CDS	32599484	32599494	.	+	2	Parent=Os02t0772300-01
Chr02	irgsp1_rep	three_prime_UTR	32599495	32599552	.	+	.	Parent=Os02t0772300-01
Chr02	irgsp1_rep	three_prime_UTR	32599835	32600347	.	+	.	Parent=Os02t0772300-01
Chr02	irgsp1_rep	mRNA	32602141	32611044	.	+	.	ID=Os02t0772500-01;Name=Os02t0772500-01;Locus_id=Os02g0772500;Note=Protein of unknown function DUF1740 domain containing protein.;Transcript_evidence=AK100349 (DDBJ%2C Best hit);ORF_evidence=B8AJ73 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Cellular Component: intracellular (GO:0005622),Molecular Function: binding (GO:0005488);InterPro=RNA-processing protein%2C HAT helix (IPR003107),Tetratricopeptide-like helical (IPR011990),Domain of unknown function DUF1740 (IPR013633);NIAS_FLcDNA=J023082M21;Expression=AK100349;TENOR=Os02t0772500-01;KEGG=Os02t0772500-01
Chr02	irgsp1_rep	five_prime_UTR	32602141	32602174	.	+	.	Parent=Os02t0772500-01
Chr02	irgsp1_rep	CDS	32602175	32602716	.	+	0	Parent=Os02t0772500-01
Chr02	irgsp1_rep	CDS	32603354	32603765	.	+	1	Parent=Os02t0772500-01
Chr02	irgsp1_rep	CDS	32603978	32604313	.	+	0	Parent=Os02t0772500-01
Chr02	irgsp1_rep	CDS	32604452	32605064	.	+	0	Parent=Os02t0772500-01
Chr02	irgsp1_rep	CDS	32605159	32605327	.	+	2	Parent=Os02t0772500-01
Chr02	irgsp1_rep	CDS	32605899	32606256	.	+	1	Parent=Os02t0772500-01
Chr02	irgsp1_rep	CDS	32606733	32606843	.	+	0	Parent=Os02t0772500-01
Chr02	irgsp1_rep	CDS	32607714	32608068	.	+	0	Parent=Os02t0772500-01
Chr02	irgsp1_rep	CDS	32608769	32608991	.	+	2	Parent=Os02t0772500-01
Chr02	irgsp1_rep	CDS	32609344	32609565	.	+	1	Parent=Os02t0772500-01
Chr02	irgsp1_rep	CDS	32610135	32610288	.	+	1	Parent=Os02t0772500-01
Chr02	irgsp1_rep	three_prime_UTR	32610289	32610737	.	+	.	Parent=Os02t0772500-01
Chr02	irgsp1_rep	three_prime_UTR	32610831	32611044	.	+	.	Parent=Os02t0772500-01
Chr02	irgsp1_rep	mRNA	32611697	32614048	.	-	.	ID=Os02t0772600-00;Name=Os02t0772600-00;Locus_id=Os02g0772600;Note=Hypothetical conserved gene.;Transcript_evidence=BT038778 (DDBJ);ORF_evidence=NP_001173163.1 (RefSeq);TENOR=Os02t0772600-00;KEGG=Os02t0772600-00
Chr02	irgsp1_rep	CDS	32613827	32614048	.	-	0	Parent=Os02t0772600-00
Chr02	irgsp1_rep	CDS	32613246	32613324	.	-	0	Parent=Os02t0772600-00
Chr02	irgsp1_rep	CDS	32612679	32613018	.	-	2	Parent=Os02t0772600-00
Chr02	irgsp1_rep	CDS	32611906	32611963	.	-	1	Parent=Os02t0772600-00
Chr02	irgsp1_rep	three_prime_UTR	32611697	32611905	.	-	.	Parent=Os02t0772600-00
Chr02	irgsp1_rep	mRNA	32611701	32613415	.	+	.	ID=Os02t0772650-00;Name=Os02t0772650-00;Locus_id=Os02g0772650;Note=Conserved hypothetical protein.;Transcript_evidence=AK375049 (DDBJ);ORF_evidence=F2EFX2 (UniProt);TENOR=Os02t0772650-00
Chr02	irgsp1_rep	five_prime_UTR	32611701	32611793	.	+	.	Parent=Os02t0772650-00
Chr02	irgsp1_rep	CDS	32611794	32611982	.	+	0	Parent=Os02t0772650-00
Chr02	irgsp1_rep	three_prime_UTR	32611983	32612052	.	+	.	Parent=Os02t0772650-00
Chr02	irgsp1_rep	three_prime_UTR	32612473	32612802	.	+	.	Parent=Os02t0772650-00
Chr02	irgsp1_rep	three_prime_UTR	32613037	32613415	.	+	.	Parent=Os02t0772650-00
Chr02	irgsp1_rep	mRNA	32617768	32620885	.	+	.	ID=Os02t0772700-01;Name=Os02t0772700-01;Locus_id=Os02g0772700;Note=Non-protein coding transcript.;Transcript_evidence=AK288948 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090083I09;TENOR=Os02t0772700-01
Chr02	irgsp1_rep	exon	32617768	32620885	.	+	.	Parent=Os02t0772700-01
Chr02	irgsp1_rep	mRNA	32643551	32644836	.	+	.	ID=Os02t0773200-01;Name=Os02t0773200-01;Locus_id=Os02g0773200;Note=UspA domain containing protein.;Transcript_evidence=AK108499 (DDBJ%2C Best hit);ORF_evidence=D2XV69 (UniProt);GO=Biological Process: response to stress (GO:0006950);InterPro=Universal stress protein A (IPR006015),UspA (IPR006016),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=002-143-H02;Expression=AK108499;TENOR=Os02t0773200-01;KEGG=Os02t0773200-01
Chr02	irgsp1_rep	five_prime_UTR	32643551	32643705	.	+	.	Parent=Os02t0773200-01
Chr02	irgsp1_rep	CDS	32643706	32643883	.	+	0	Parent=Os02t0773200-01
Chr02	irgsp1_rep	CDS	32644013	32644122	.	+	2	Parent=Os02t0773200-01
Chr02	irgsp1_rep	CDS	32644283	32644401	.	+	0	Parent=Os02t0773200-01
Chr02	irgsp1_rep	CDS	32644489	32644579	.	+	1	Parent=Os02t0773200-01
Chr02	irgsp1_rep	three_prime_UTR	32644580	32644836	.	+	.	Parent=Os02t0773200-01
Chr02	irgsp1_rep	mRNA	32645001	32648453	.	-	.	ID=Os02t0773300-01;Name=Os02t0773300-01;Locus_id=Os02g0773300;Note=Pyridoxal phosphate-dependent deaminase family protein.;Transcript_evidence=AK071811 (DDBJ%2C Best hit);ORF_evidence=B2MWN0 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent enzyme%2C beta subunit (IPR001926),Pyridoxal phosphate-dependent deaminase (IPR005966);NIAS_FLcDNA=J023113F04;Expression=AK071811;TENOR=Os02t0773300-01;KEGG=Os02t0773300-01
Chr02	irgsp1_rep	five_prime_UTR	32648361	32648453	.	-	.	Parent=Os02t0773300-01
Chr02	irgsp1_rep	CDS	32648232	32648360	.	-	0	Parent=Os02t0773300-01
Chr02	irgsp1_rep	CDS	32648019	32648084	.	-	0	Parent=Os02t0773300-01
Chr02	irgsp1_rep	CDS	32647627	32647821	.	-	0	Parent=Os02t0773300-01
Chr02	irgsp1_rep	CDS	32647405	32647515	.	-	0	Parent=Os02t0773300-01
Chr02	irgsp1_rep	CDS	32646921	32647012	.	-	0	Parent=Os02t0773300-01
Chr02	irgsp1_rep	CDS	32646285	32646374	.	-	1	Parent=Os02t0773300-01
Chr02	irgsp1_rep	CDS	32646096	32646153	.	-	1	Parent=Os02t0773300-01
Chr02	irgsp1_rep	CDS	32645913	32646026	.	-	0	Parent=Os02t0773300-01
Chr02	irgsp1_rep	CDS	32645572	32645669	.	-	0	Parent=Os02t0773300-01
Chr02	irgsp1_rep	CDS	32645166	32645370	.	-	1	Parent=Os02t0773300-01
Chr02	irgsp1_rep	three_prime_UTR	32645001	32645165	.	-	.	Parent=Os02t0773300-01
Chr02	irgsp1_rep	mRNA	32648723	32659774	.	+	.	ID=Os02t0773400-01;Name=Os02t0773400-01;Locus_id=Os02g0773400;CGSNL Gene Symbol=CNGC4;CGSNL Gene Name=CYCLIC NUCLEOTIDE GATED CHANNEL 4;Oryzabase Gene Symbol Synonym(s)=OsCNGC4%2C OsCNGC12;Oryzabase Gene Name Synonym(s)=Cyclic nucleotide gated channel 4%2C Cyclic nucleotide-gated ion channel 12;Note=Cyclic nucleotide-binding domain containing protein.;Transcript_evidence=AK100497 (DDBJ%2C Best hit);ORF_evidence=XP_002883080.1 (RefSeq);InterPro=Cyclic nucleotide-binding domain (IPR000595),RmlC-like jelly roll fold (IPR014710),Cyclic nucleotide-binding-like (IPR018490);NIAS_FLcDNA=J023099D19;Oryzabase=15477;Expression=AK100497;TENOR=Os02t0773400-01;KEGG=Os02t0773400-01
Chr02	irgsp1_rep	five_prime_UTR	32648723	32648789	.	+	.	Parent=Os02t0773400-01
Chr02	irgsp1_rep	five_prime_UTR	32649722	32649785	.	+	.	Parent=Os02t0773400-01
Chr02	irgsp1_rep	five_prime_UTR	32650204	32650212	.	+	.	Parent=Os02t0773400-01
Chr02	irgsp1_rep	CDS	32650213	32650647	.	+	0	Parent=Os02t0773400-01
Chr02	irgsp1_rep	CDS	32651279	32651464	.	+	0	Parent=Os02t0773400-01
Chr02	irgsp1_rep	CDS	32651823	32651921	.	+	0	Parent=Os02t0773400-01
Chr02	irgsp1_rep	CDS	32652517	32652654	.	+	0	Parent=Os02t0773400-01
Chr02	irgsp1_rep	CDS	32653783	32654040	.	+	0	Parent=Os02t0773400-01
Chr02	irgsp1_rep	CDS	32656516	32656779	.	+	0	Parent=Os02t0773400-01
Chr02	irgsp1_rep	CDS	32656933	32657078	.	+	0	Parent=Os02t0773400-01
Chr02	irgsp1_rep	CDS	32657269	32657346	.	+	1	Parent=Os02t0773400-01
Chr02	irgsp1_rep	CDS	32658253	32658382	.	+	1	Parent=Os02t0773400-01
Chr02	irgsp1_rep	CDS	32658547	32658793	.	+	0	Parent=Os02t0773400-01
Chr02	irgsp1_rep	CDS	32658881	32659043	.	+	2	Parent=Os02t0773400-01
Chr02	irgsp1_rep	CDS	32659377	32659551	.	+	1	Parent=Os02t0773400-01
Chr02	irgsp1_rep	three_prime_UTR	32659552	32659774	.	+	.	Parent=Os02t0773400-01
Chr02	irgsp1_rep	mRNA	32650200	32659462	.	-	.	ID=Os02t0773450-00;Name=Os02t0773450-00;Locus_id=Os02g0773450;Note=Hypothetical protein.;Transcript_evidence=tplb0025a09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0773450-00
Chr02	irgsp1_rep	five_prime_UTR	32659374	32659462	.	-	.	Parent=Os02t0773450-00
Chr02	irgsp1_rep	five_prime_UTR	32658876	32659040	.	-	.	Parent=Os02t0773450-00
Chr02	irgsp1_rep	five_prime_UTR	32658534	32658788	.	-	.	Parent=Os02t0773450-00
Chr02	irgsp1_rep	five_prime_UTR	32658264	32658373	.	-	.	Parent=Os02t0773450-00
Chr02	irgsp1_rep	five_prime_UTR	32657268	32657352	.	-	.	Parent=Os02t0773450-00
Chr02	irgsp1_rep	five_prime_UTR	32656944	32657077	.	-	.	Parent=Os02t0773450-00
Chr02	irgsp1_rep	five_prime_UTR	32656525	32656787	.	-	.	Parent=Os02t0773450-00
Chr02	irgsp1_rep	five_prime_UTR	32653781	32654050	.	-	.	Parent=Os02t0773450-00
Chr02	irgsp1_rep	five_prime_UTR	32652489	32652652	.	-	.	Parent=Os02t0773450-00
Chr02	irgsp1_rep	five_prime_UTR	32651829	32651892	.	-	.	Parent=Os02t0773450-00
Chr02	irgsp1_rep	five_prime_UTR	32651276	32651468	.	-	.	Parent=Os02t0773450-00
Chr02	irgsp1_rep	five_prime_UTR	32650615	32650644	.	-	.	Parent=Os02t0773450-00
Chr02	irgsp1_rep	CDS	32650291	32650614	.	-	0	Parent=Os02t0773450-00
Chr02	irgsp1_rep	three_prime_UTR	32650200	32650290	.	-	.	Parent=Os02t0773450-00
Chr02	irgsp1_rep	mRNA	32663482	32664208	.	-	.	ID=Os02t0773500-01;Name=Os02t0773500-01;Locus_id=Os02g0773500;Note=Protein of unknown function DUF3464 domain containing protein.;Transcript_evidence=AK062694 (DDBJ%2C Best hit);ORF_evidence=A2XA48 (UniProt);InterPro=Protein of unknown function DUF3464 (IPR021855);NIAS_FLcDNA=001-106-A07;Expression=AK062694;TENOR=Os02t0773500-01;KEGG=Os02t0773500-01
Chr02	irgsp1_rep	five_prime_UTR	32664149	32664208	.	-	.	Parent=Os02t0773500-01
Chr02	irgsp1_rep	CDS	32663555	32664148	.	-	0	Parent=Os02t0773500-01
Chr02	irgsp1_rep	three_prime_UTR	32663482	32663554	.	-	.	Parent=Os02t0773500-01
Chr02	irgsp1_rep	mRNA	32666343	32668096	.	-	.	ID=Os02t0773600-00;Name=Os02t0773600-00;Locus_id=Os02g0773600;Note=Hypothetical conserved gene.;Transcript_evidence=AK332154 (DDBJ);ORF_evidence=NP_001048270.2 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WRC (IPR014977);TENOR=Os02t0773600-00;KEGG=Os02t0773600-00
Chr02	irgsp1_rep	CDS	32667699	32668096	.	-	0	Parent=Os02t0773600-00
Chr02	irgsp1_rep	CDS	32667418	32667467	.	-	1	Parent=Os02t0773600-00
Chr02	irgsp1_rep	CDS	32666343	32666761	.	-	2	Parent=Os02t0773600-00
Chr02	irgsp1_rep	mRNA	32670910	32677364	.	+	.	ID=Os02t0773700-01;Name=Os02t0773700-01;Locus_id=Os02g0773700;Note=Hypothetical gene.;Transcript_evidence=AK288539 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090045L21;TENOR=Os02t0773700-01;KEGG=Os02t0773700-01
Chr02	irgsp1_rep	five_prime_UTR	32670910	32673204	.	+	.	Parent=Os02t0773700-01
Chr02	irgsp1_rep	CDS	32673205	32673810	.	+	0	Parent=Os02t0773700-01
Chr02	irgsp1_rep	three_prime_UTR	32673811	32677364	.	+	.	Parent=Os02t0773700-01
Chr02	irgsp1_rep	mRNA	32670804	32673918	.	-	.	ID=Os02t0773732-01;Name=Os02t0773732-01;Locus_id=Os02g0773732;Oryzabase Gene Symbol Synonym(s)=OsTBL31%2C TBL31;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 31;Note=Hypothetical conserved gene.;Transcript_evidence=AK243253 (DDBJ%2C Best hit);ORF_evidence=A2XA50 (UniProt);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=J100048E11;Oryzabase=21486;TENOR=Os02t0773732-01;KEGG=Os02t0773732-01
Chr02	irgsp1_rep	five_prime_UTR	32673677	32673918	.	-	.	Parent=Os02t0773732-01
Chr02	irgsp1_rep	CDS	32672463	32673676	.	-	0	Parent=Os02t0773732-01
Chr02	irgsp1_rep	CDS	32672176	32672368	.	-	1	Parent=Os02t0773732-01
Chr02	irgsp1_rep	CDS	32671887	32672080	.	-	0	Parent=Os02t0773732-01
Chr02	irgsp1_rep	CDS	32671624	32671782	.	-	1	Parent=Os02t0773732-01
Chr02	irgsp1_rep	CDS	32671172	32671514	.	-	1	Parent=Os02t0773732-01
Chr02	irgsp1_rep	three_prime_UTR	32670804	32671171	.	-	.	Parent=Os02t0773732-01
Chr02	irgsp1_rep	mRNA	32678768	32681169	.	+	.	ID=Os02t0773800-01;Name=Os02t0773800-01;Locus_id=Os02g0773800;Note=Conserved hypothetical protein.;Transcript_evidence=AK103063 (DDBJ%2C Best hit);ORF_evidence=B9FSI3 (UniProt);NIAS_FLcDNA=J033117N07;Expression=AK103063;TENOR=Os02t0773800-01;KEGG=Os02t0773800-01
Chr02	irgsp1_rep	five_prime_UTR	32678768	32678769	.	+	.	Parent=Os02t0773800-01
Chr02	irgsp1_rep	CDS	32678770	32679162	.	+	0	Parent=Os02t0773800-01
Chr02	irgsp1_rep	three_prime_UTR	32679163	32679234	.	+	.	Parent=Os02t0773800-01
Chr02	irgsp1_rep	three_prime_UTR	32679330	32679422	.	+	.	Parent=Os02t0773800-01
Chr02	irgsp1_rep	three_prime_UTR	32679512	32679580	.	+	.	Parent=Os02t0773800-01
Chr02	irgsp1_rep	three_prime_UTR	32679664	32681169	.	+	.	Parent=Os02t0773800-01
Chr02	irgsp1_rep	mRNA	32678777	32681146	.	+	.	ID=Os02t0773800-02;Name=Os02t0773800-02;Locus_id=Os02g0773800;Note=Hypothetical conserved gene.;Transcript_evidence=AK059743 (DDBJ%2C Best hit);ORF_evidence=B9FSI3 (UniProt);NIAS_FLcDNA=006-202-G06;Expression=AK059743;TENOR=Os02t0773800-02;KEGG=Os02t0773800-02
Chr02	irgsp1_rep	five_prime_UTR	32678777	32679196	.	+	.	Parent=Os02t0773800-02
Chr02	irgsp1_rep	CDS	32679197	32679234	.	+	0	Parent=Os02t0773800-02
Chr02	irgsp1_rep	CDS	32679330	32679422	.	+	1	Parent=Os02t0773800-02
Chr02	irgsp1_rep	CDS	32679512	32679578	.	+	1	Parent=Os02t0773800-02
Chr02	irgsp1_rep	three_prime_UTR	32679579	32679580	.	+	.	Parent=Os02t0773800-02
Chr02	irgsp1_rep	three_prime_UTR	32679664	32679727	.	+	.	Parent=Os02t0773800-02
Chr02	irgsp1_rep	three_prime_UTR	32680088	32680131	.	+	.	Parent=Os02t0773800-02
Chr02	irgsp1_rep	three_prime_UTR	32680861	32681146	.	+	.	Parent=Os02t0773800-02
Chr02	irgsp1_rep	mRNA	32684064	32686004	.	+	.	ID=Os02t0774100-00;Name=Os02t0774100-00;Locus_id=Os02g0774100;Note=Similar to thioredoxin-like 5.;Transcript_evidence=BT083668 (DDBJ);ORF_evidence=A6N1I7 (UniProt);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Thioredoxin (IPR005746),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766);TENOR=Os02t0774100-00;KEGG=Os02t0774100-00
Chr02	irgsp1_rep	five_prime_UTR	32684064	32684259	.	+	.	Parent=Os02t0774100-00
Chr02	irgsp1_rep	CDS	32684260	32684585	.	+	0	Parent=Os02t0774100-00
Chr02	irgsp1_rep	CDS	32685214	32685285	.	+	1	Parent=Os02t0774100-00
Chr02	irgsp1_rep	CDS	32685441	32685507	.	+	1	Parent=Os02t0774100-00
Chr02	irgsp1_rep	CDS	32685791	32685841	.	+	0	Parent=Os02t0774100-00
Chr02	irgsp1_rep	three_prime_UTR	32685842	32686004	.	+	.	Parent=Os02t0774100-00
Chr02	irgsp1_rep	mRNA	32686312	32686824	.	-	.	ID=Os02t0774200-01;Name=Os02t0774200-01;Locus_id=Os02g0774200;Note=Conserved hypothetical protein.;Transcript_evidence=AK066815 (DDBJ%2C Best hit),AK064163 (DDBJ%2C Best hit);ORF_evidence=A2XA52 (UniProt);NIAS_FLcDNA=J013084M15,002-103-G09;Expression=AK066815;TENOR=Os02t0774200-01;KEGG=Os02t0774200-01
Chr02	irgsp1_rep	five_prime_UTR	32686740	32686824	.	-	.	Parent=Os02t0774200-01
Chr02	irgsp1_rep	CDS	32686434	32686739	.	-	0	Parent=Os02t0774200-01
Chr02	irgsp1_rep	three_prime_UTR	32686312	32686433	.	-	.	Parent=Os02t0774200-01
Chr02	irgsp1_rep	mRNA	32688709	32692990	.	-	.	ID=Os02t0774300-01;Name=Os02t0774300-01;Locus_id=Os02g0774300;CGSNL Gene Symbol=ISC23;CGSNL Gene Name=IRON-SULFUR CLUSTER PROTEIN 23;Oryzabase Gene Symbol Synonym(s)=OsISC23;Oryzabase Gene Name Synonym(s)=Iron-sulfur cluster protein 23%2C Heat-shock protein homolog dnaK protein;Note=Similar to Heat shock 70 kDa protein%2C mitochondrial precursor.;Transcript_evidence=AK065228 (DDBJ%2C Best hit);ORF_evidence=NP_001151739.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: ATP binding (GO:0005524),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein Hsp70 (IPR001023),Chaperone DnaK (IPR012725),Heat shock protein 70 (IPR013126),Heat shock protein 70%2C conserved site (IPR018181);NIAS_FLcDNA=J013002H04;Oryzabase=13435;Expression=AK065228;TENOR=Os02t0774300-01;KEGG=Os02t0774300-01
Chr02	irgsp1_rep	five_prime_UTR	32692906	32692990	.	-	.	Parent=Os02t0774300-01
Chr02	irgsp1_rep	CDS	32692843	32692905	.	-	0	Parent=Os02t0774300-01
Chr02	irgsp1_rep	CDS	32691509	32691582	.	-	0	Parent=Os02t0774300-01
Chr02	irgsp1_rep	CDS	32691347	32691425	.	-	1	Parent=Os02t0774300-01
Chr02	irgsp1_rep	CDS	32690690	32691259	.	-	0	Parent=Os02t0774300-01
Chr02	irgsp1_rep	CDS	32689957	32690577	.	-	0	Parent=Os02t0774300-01
Chr02	irgsp1_rep	CDS	32688978	32689610	.	-	0	Parent=Os02t0774300-01
Chr02	irgsp1_rep	three_prime_UTR	32688709	32688977	.	-	.	Parent=Os02t0774300-01
Chr02	irgsp1_rep	mRNA	32688749	32690881	.	-	.	ID=Os02t0774300-02;Name=Os02t0774300-02;Locus_id=Os02g0774300;CGSNL Gene Symbol=ISC23;CGSNL Gene Name=IRON-SULFUR CLUSTER PROTEIN 23;Oryzabase Gene Symbol Synonym(s)=OsISC23;Oryzabase Gene Name Synonym(s)=Iron-sulfur cluster protein 23%2C Heat-shock protein homolog dnaK protein;Note=Similar to heat shock 70 kDa protein.;Transcript_evidence=AK060740 (DDBJ%2C Best hit);ORF_evidence=NP_001151739.1 (RefSeq);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Heat shock protein Hsp70 (IPR001023),Heat shock protein 70 (IPR013126),Heat shock protein 70%2C conserved site (IPR018181);NIAS_FLcDNA=001-032-D07;Oryzabase=13435;Expression=AK060740;TENOR=Os02t0774300-02;KEGG=Os02t0774300-02
Chr02	irgsp1_rep	CDS	32690690	32690881	.	-	0	Parent=Os02t0774300-02
Chr02	irgsp1_rep	CDS	32689957	32690577	.	-	0	Parent=Os02t0774300-02
Chr02	irgsp1_rep	CDS	32688978	32689610	.	-	0	Parent=Os02t0774300-02
Chr02	irgsp1_rep	three_prime_UTR	32688749	32688977	.	-	.	Parent=Os02t0774300-02
Chr02	irgsp1_rep	mRNA	32688877	32691426	.	+	.	ID=Os02t0774400-00;Name=Os02t0774400-00;Locus_id=Os02g0774400;Note=Hypothetical protein.;Transcript_evidence=tplb0023b01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0774400-00
Chr02	irgsp1_rep	five_prime_UTR	32688877	32689608	.	+	.	Parent=Os02t0774400-00
Chr02	irgsp1_rep	five_prime_UTR	32689955	32690098	.	+	.	Parent=Os02t0774400-00
Chr02	irgsp1_rep	CDS	32690099	32690566	.	+	0	Parent=Os02t0774400-00
Chr02	irgsp1_rep	CDS	32690675	32690722	.	+	0	Parent=Os02t0774400-00
Chr02	irgsp1_rep	three_prime_UTR	32690723	32691256	.	+	.	Parent=Os02t0774400-00
Chr02	irgsp1_rep	three_prime_UTR	32691337	32691426	.	+	.	Parent=Os02t0774400-00
Chr02	irgsp1_rep	mRNA	32695464	32697585	.	-	.	ID=Os02t0774500-01;Name=Os02t0774500-01;Locus_id=Os02g0774500;Oryzabase Gene Symbol Synonym(s)=TagI;Note=Similar to DNA-3-methyladenine glycosylase (EC 3.2.2.21) (3-methyladenine DNA glycosidase).;Transcript_evidence=AK110707 (DDBJ%2C Best hit);ORF_evidence=NP_001151800.1 (RefSeq);GO=Biological Process: base-excision repair (GO:0006284),Molecular Function: DNA binding (GO:0003677),Molecular Function: catalytic activity (GO:0003824),Molecular Function: alkylbase DNA N-glycosylase activity (GO:0003905);InterPro=Methylpurine-DNA glycosylase (MPG) (IPR003180),Formyl transferase%2C C-terminal-like (IPR011034);NIAS_FLcDNA=002-170-C08;Oryzabase=21274;Expression=AK110707;TENOR=Os02t0774500-01;KEGG=Os02t0774500-01 (EC:3.2.2.21)
Chr02	irgsp1_rep	five_prime_UTR	32697554	32697585	.	-	.	Parent=Os02t0774500-01
Chr02	irgsp1_rep	CDS	32697182	32697553	.	-	0	Parent=Os02t0774500-01
Chr02	irgsp1_rep	CDS	32697018	32697089	.	-	0	Parent=Os02t0774500-01
Chr02	irgsp1_rep	CDS	32696787	32696910	.	-	0	Parent=Os02t0774500-01
Chr02	irgsp1_rep	CDS	32696055	32696125	.	-	2	Parent=Os02t0774500-01
Chr02	irgsp1_rep	CDS	32695907	32695964	.	-	0	Parent=Os02t0774500-01
Chr02	irgsp1_rep	CDS	32695663	32695826	.	-	2	Parent=Os02t0774500-01
Chr02	irgsp1_rep	three_prime_UTR	32695464	32695662	.	-	.	Parent=Os02t0774500-01
Chr02	irgsp1_rep	mRNA	32700433	32704631	.	+	.	ID=Os02t0774700-01;Name=Os02t0774700-01;Locus_id=Os02g0774700;Note=Conserved hypothetical protein.;Transcript_evidence=AK063989 (DDBJ%2C Best hit);ORF_evidence=B9F3I0 (UniProt);NIAS_FLcDNA=001-124-E02;TENOR=Os02t0774700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	32700433	32700708	.	+	.	Parent=Os02t0774700-01
Chr02	irgsp1_rep	five_prime_UTR	32701450	32701573	.	+	.	Parent=Os02t0774700-01
Chr02	irgsp1_rep	five_prime_UTR	32702324	32702406	.	+	.	Parent=Os02t0774700-01
Chr02	irgsp1_rep	five_prime_UTR	32702794	32703080	.	+	.	Parent=Os02t0774700-01
Chr02	irgsp1_rep	CDS	32703081	32703289	.	+	0	Parent=Os02t0774700-01
Chr02	irgsp1_rep	CDS	32704235	32704499	.	+	1	Parent=Os02t0774700-01
Chr02	irgsp1_rep	three_prime_UTR	32704500	32704631	.	+	.	Parent=Os02t0774700-01
Chr02	irgsp1_rep	mRNA	32700460	32704627	.	+	.	ID=Os02t0774700-02;Name=Os02t0774700-02;Locus_id=Os02g0774700;Note=Conserved hypothetical protein.;Transcript_evidence=AK102006 (DDBJ%2C Best hit);ORF_evidence=B9F3I0 (UniProt);NIAS_FLcDNA=J033079N19;TENOR=Os02t0774700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	32700460	32700708	.	+	.	Parent=Os02t0774700-02
Chr02	irgsp1_rep	five_prime_UTR	32701450	32701573	.	+	.	Parent=Os02t0774700-02
Chr02	irgsp1_rep	five_prime_UTR	32702324	32702406	.	+	.	Parent=Os02t0774700-02
Chr02	irgsp1_rep	five_prime_UTR	32702794	32703080	.	+	.	Parent=Os02t0774700-02
Chr02	irgsp1_rep	CDS	32703081	32703446	.	+	0	Parent=Os02t0774700-02
Chr02	irgsp1_rep	three_prime_UTR	32703447	32704627	.	+	.	Parent=Os02t0774700-02
Chr02	irgsp1_rep	mRNA	32702949	32704653	.	-	.	ID=Os02t0774800-01;Name=Os02t0774800-01;Locus_id=Os02g0774800;Note=Conserved hypothetical protein.;Transcript_evidence=AK072678 (DDBJ%2C Best hit);ORF_evidence=A2XA57 (UniProt);NIAS_FLcDNA=J023137O08;Expression=AK072678;TENOR=Os02t0774800-01;KEGG=Os02t0774800-01
Chr02	irgsp1_rep	five_prime_UTR	32704558	32704653	.	-	.	Parent=Os02t0774800-01
Chr02	irgsp1_rep	CDS	32704541	32704557	.	-	0	Parent=Os02t0774800-01
Chr02	irgsp1_rep	CDS	32703241	32704456	.	-	1	Parent=Os02t0774800-01
Chr02	irgsp1_rep	three_prime_UTR	32702949	32703240	.	-	.	Parent=Os02t0774800-01
Chr02	irgsp1_rep	mRNA	32720995	32723211	.	-	.	ID=Os02t0775050-00;Name=Os02t0775050-00;Locus_id=Os02g0775050;Note=Hypothetical protein.;Transcript_evidence=tplb0026c09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0775050-00
Chr02	irgsp1_rep	five_prime_UTR	32722939	32723211	.	-	.	Parent=Os02t0775050-00
Chr02	irgsp1_rep	five_prime_UTR	32722723	32722795	.	-	.	Parent=Os02t0775050-00
Chr02	irgsp1_rep	CDS	32722678	32722722	.	-	0	Parent=Os02t0775050-00
Chr02	irgsp1_rep	CDS	32722276	32722424	.	-	0	Parent=Os02t0775050-00
Chr02	irgsp1_rep	CDS	32722079	32722121	.	-	1	Parent=Os02t0775050-00
Chr02	irgsp1_rep	three_prime_UTR	32721930	32722078	.	-	.	Parent=Os02t0775050-00
Chr02	irgsp1_rep	three_prime_UTR	32721642	32721834	.	-	.	Parent=Os02t0775050-00
Chr02	irgsp1_rep	three_prime_UTR	32721336	32721512	.	-	.	Parent=Os02t0775050-00
Chr02	irgsp1_rep	three_prime_UTR	32720995	32721218	.	-	.	Parent=Os02t0775050-00
Chr02	irgsp1_rep	mRNA	32721002	32723342	.	+	.	ID=Os02t0775100-01;Name=Os02t0775100-01;Locus_id=Os02g0775100;RAP-DB Gene Symbol Synonym(s)=MTP8.2;RAP-DB Gene Name Synonym(s)=metal tolerance protein 8.2;CGSNL Gene Symbol=MTP8;CGSNL Gene Name=METAL TOLERANCE PROTEIN 8;Oryzabase Gene Symbol Synonym(s)=OsMTP8%2C MTP8.2%2C OsMTP8.2;Oryzabase Gene Name Synonym(s)=metal tolerance protein 8%2C metal tolerance protein 8.2;Note=Manganese (Mn) cation diffusion facilitator (Mn-CDF)%2C Mn tolerance;Transcript_evidence=AK110750 (truncated),Inferred from literature;ORF_evidence=Q6Z7K5;GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Molecular Function: cation transmembrane transporter activity (GO:0008324),Cellular Component: integral component of membrane (GO:0016021);InterPro=Cation efflux transmembrane domain superfamily (IPR027469),Cation efflux protein%2C cytoplasmic domain superfamily (IPR036837),Cation efflux protein (IPR002524),Cation efflux protein%2C cytoplasmic domain (IPR027470);NIAS_FLcDNA=002-170-G06 (truncated);Manual Curation=October 10%2C 2017;Literature_PMID=28633293;Oryzabase=13411;Expression=AK110750;TENOR=Os02t0775100-01;KEGG=Os02t0775100-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=tonoplast (GO:0009705)
Chr02	irgsp1_rep	CDS	32721002	32721203	.	+	0	Parent=Os02t0775100-01
Chr02	irgsp1_rep	CDS	32721322	32721509	.	+	2	Parent=Os02t0775100-01
Chr02	irgsp1_rep	CDS	32721639	32721837	.	+	0	Parent=Os02t0775100-01
Chr02	irgsp1_rep	CDS	32721933	32722111	.	+	2	Parent=Os02t0775100-01
Chr02	irgsp1_rep	CDS	32722267	32722417	.	+	0	Parent=Os02t0775100-01
Chr02	irgsp1_rep	CDS	32722672	32722805	.	+	2	Parent=Os02t0775100-01
Chr02	irgsp1_rep	CDS	32722943	32723122	.	+	0	Parent=Os02t0775100-01
Chr02	irgsp1_rep	three_prime_UTR	32723123	32723342	.	+	.	Parent=Os02t0775100-01
Chr02	irgsp1_rep	mRNA	32723403	32727558	.	-	.	ID=Os02t0775200-01;Name=Os02t0775200-01;Locus_id=Os02g0775200;CGSNL Gene Symbol=RFC3;CGSNL Gene Name=REPLICATION FACTOR C SUBUNIT 3;Oryzabase Gene Symbol Synonym(s)=OsRFC3;Oryzabase Gene Name Synonym(s)=Replication Factor C3;Note=Similar to Activator 1 36 kDa subunit (Replication factor C 36 kDa subunit) (A1 36 kDa subunit) (RF-C 36 kDa subunit) (RFC36) (Replication factor C subunit 5).;Transcript_evidence=AK069984 (DDBJ%2C Best hit);ORF_evidence=Q9FXT5 (UniProt);GO=Biological Process: DNA replication (GO:0006260),Cellular Component: DNA replication factor C complex (GO:0005663),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA clamp loader activity (GO:0003689),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),DNA polymerase III%2C clamp loader complex%2C gamma/delta/delta subunit%2C C-terminal (IPR008921),Replication factor C (IPR013748);NIAS_FLcDNA=J023036N01;Oryzabase=20186;Expression=AK069984;TENOR=Os02t0775200-01;KEGG=Os02t0775200-01
Chr02	irgsp1_rep	five_prime_UTR	32727431	32727558	.	-	.	Parent=Os02t0775200-01
Chr02	irgsp1_rep	CDS	32727247	32727430	.	-	0	Parent=Os02t0775200-01
Chr02	irgsp1_rep	CDS	32726276	32726492	.	-	2	Parent=Os02t0775200-01
Chr02	irgsp1_rep	CDS	32725797	32725876	.	-	1	Parent=Os02t0775200-01
Chr02	irgsp1_rep	CDS	32725545	32725704	.	-	2	Parent=Os02t0775200-01
Chr02	irgsp1_rep	CDS	32725275	32725356	.	-	1	Parent=Os02t0775200-01
Chr02	irgsp1_rep	CDS	32724760	32724889	.	-	0	Parent=Os02t0775200-01
Chr02	irgsp1_rep	CDS	32724580	32724643	.	-	2	Parent=Os02t0775200-01
Chr02	irgsp1_rep	CDS	32724416	32724484	.	-	1	Parent=Os02t0775200-01
Chr02	irgsp1_rep	CDS	32723689	32723788	.	-	1	Parent=Os02t0775200-01
Chr02	irgsp1_rep	three_prime_UTR	32723403	32723688	.	-	.	Parent=Os02t0775200-01
Chr02	irgsp1_rep	mRNA	32728445	32729346	.	-	.	ID=Os02t0775300-01;Name=Os02t0775300-01;Locus_id=Os02g0775300;Note=Conserved hypothetical protein.;Transcript_evidence=AK111093 (DDBJ%2C Best hit);ORF_evidence=B8AJG6 (UniProt);NIAS_FLcDNA=002-175-G05;Expression=AK111093;TENOR=Os02t0775300-01;KEGG=Os02t0775300-01
Chr02	irgsp1_rep	five_prime_UTR	32729282	32729346	.	-	.	Parent=Os02t0775300-01
Chr02	irgsp1_rep	CDS	32728814	32729281	.	-	0	Parent=Os02t0775300-01
Chr02	irgsp1_rep	three_prime_UTR	32728445	32728813	.	-	.	Parent=Os02t0775300-01
Chr02	irgsp1_rep	mRNA	32730984	32740313	.	-	.	ID=Os02t0775400-01;Name=Os02t0775400-01;Locus_id=Os02g0775400;Oryzabase Gene Symbol Synonym(s)=SIP26;Oryzabase Gene Name Synonym(s)=SKIP interacting protein 26%2C SKIPa-interacting protein 26%2C SKIPa-interacting protein 26;Note=Similar to Kinesin heavy chain-like protein (Fragment).;Transcript_evidence=AK068672 (DDBJ%2C Best hit);ORF_evidence=B8Q8B2 (UniProt);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752),Kinesin%2C motor region%2C conserved site (IPR019821);NIAS_FLcDNA=J013159K16;Oryzabase=9958;Expression=AK068672;TENOR=Os02t0775400-01;KEGG=Os02t0775400-01
Chr02	irgsp1_rep	five_prime_UTR	32740224	32740313	.	-	.	Parent=Os02t0775400-01
Chr02	irgsp1_rep	CDS	32739943	32740223	.	-	0	Parent=Os02t0775400-01
Chr02	irgsp1_rep	CDS	32739743	32739840	.	-	1	Parent=Os02t0775400-01
Chr02	irgsp1_rep	CDS	32738549	32738638	.	-	2	Parent=Os02t0775400-01
Chr02	irgsp1_rep	CDS	32738208	32738260	.	-	2	Parent=Os02t0775400-01
Chr02	irgsp1_rep	CDS	32737675	32737740	.	-	0	Parent=Os02t0775400-01
Chr02	irgsp1_rep	CDS	32737530	32737583	.	-	0	Parent=Os02t0775400-01
Chr02	irgsp1_rep	CDS	32737383	32737442	.	-	0	Parent=Os02t0775400-01
Chr02	irgsp1_rep	CDS	32737005	32737083	.	-	0	Parent=Os02t0775400-01
Chr02	irgsp1_rep	CDS	32736750	32736817	.	-	2	Parent=Os02t0775400-01
Chr02	irgsp1_rep	CDS	32736518	32736580	.	-	0	Parent=Os02t0775400-01
Chr02	irgsp1_rep	CDS	32736331	32736435	.	-	0	Parent=Os02t0775400-01
Chr02	irgsp1_rep	CDS	32735933	32736037	.	-	0	Parent=Os02t0775400-01
Chr02	irgsp1_rep	CDS	32735719	32735826	.	-	0	Parent=Os02t0775400-01
Chr02	irgsp1_rep	CDS	32735471	32735617	.	-	0	Parent=Os02t0775400-01
Chr02	irgsp1_rep	CDS	32735043	32735221	.	-	0	Parent=Os02t0775400-01
Chr02	irgsp1_rep	CDS	32734732	32734819	.	-	1	Parent=Os02t0775400-01
Chr02	irgsp1_rep	three_prime_UTR	32734667	32734731	.	-	.	Parent=Os02t0775400-01
Chr02	irgsp1_rep	three_prime_UTR	32734257	32734478	.	-	.	Parent=Os02t0775400-01
Chr02	irgsp1_rep	three_prime_UTR	32733624	32733764	.	-	.	Parent=Os02t0775400-01
Chr02	irgsp1_rep	three_prime_UTR	32733414	32733539	.	-	.	Parent=Os02t0775400-01
Chr02	irgsp1_rep	three_prime_UTR	32733276	32733326	.	-	.	Parent=Os02t0775400-01
Chr02	irgsp1_rep	three_prime_UTR	32732569	32732616	.	-	.	Parent=Os02t0775400-01
Chr02	irgsp1_rep	three_prime_UTR	32732263	32732466	.	-	.	Parent=Os02t0775400-01
Chr02	irgsp1_rep	three_prime_UTR	32730984	32731707	.	-	.	Parent=Os02t0775400-01
Chr02	irgsp1_rep	mRNA	32750142	32751374	.	-	.	ID=Os02t0775600-01;Name=Os02t0775600-01;Locus_id=Os02g0775600;Note=Zinc finger%2C C2H2-like domain containing protein.;Transcript_evidence=AK068762 (DDBJ%2C Best hit);ORF_evidence=A2XA63 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J013165P15;Expression=AK068762;TENOR=Os02t0775600-01;KEGG=Os02t0775600-01
Chr02	irgsp1_rep	five_prime_UTR	32751162	32751374	.	-	.	Parent=Os02t0775600-01
Chr02	irgsp1_rep	CDS	32750322	32751161	.	-	0	Parent=Os02t0775600-01
Chr02	irgsp1_rep	three_prime_UTR	32750142	32750321	.	-	.	Parent=Os02t0775600-01
Chr02	irgsp1_rep	mRNA	32750229	32751276	.	-	.	ID=Os02t0775600-02;Name=Os02t0775600-02;Locus_id=Os02g0775600;Note=Zinc finger%2C C2H2-like domain containing protein.;Transcript_evidence=AK058592 (DDBJ%2C Best hit);ORF_evidence=A2XA63 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=001-017-G09;Expression=AK058592;TENOR=Os02t0775600-02;KEGG=Os02t0775600-02
Chr02	irgsp1_rep	five_prime_UTR	32751162	32751276	.	-	.	Parent=Os02t0775600-02
Chr02	irgsp1_rep	CDS	32750322	32751161	.	-	0	Parent=Os02t0775600-02
Chr02	irgsp1_rep	three_prime_UTR	32750229	32750321	.	-	.	Parent=Os02t0775600-02
Chr02	irgsp1_rep	mRNA	32778200	32778764	.	-	.	ID=Os02t0775900-01;Name=Os02t0775900-01;Locus_id=Os02g0775900;Note=Conserved hypothetical protein.;Transcript_evidence=AK119974 (DDBJ%2C Best hit);ORF_evidence=A2XA65 (UniProt);NIAS_FLcDNA=002-184-E11;Expression=AK119974;TENOR=Os02t0775900-01;KEGG=Os02t0775900-01
Chr02	irgsp1_rep	five_prime_UTR	32778758	32778764	.	-	.	Parent=Os02t0775900-01
Chr02	irgsp1_rep	CDS	32778317	32778757	.	-	0	Parent=Os02t0775900-01
Chr02	irgsp1_rep	three_prime_UTR	32778200	32778316	.	-	.	Parent=Os02t0775900-01
Chr02	irgsp1_rep	mRNA	32794229	32798340	.	-	.	ID=Os02t0776400-01;Name=Os02t0776400-01;Locus_id=Os02g0776400;CGSNL Gene Symbol=HAP2K;CGSNL Gene Name=HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX;Oryzabase Gene Symbol Synonym(s)=OsHAP2K%2C NF-YA11%2C OsNF-YA11%2C NFYA11;Oryzabase Gene Name Synonym(s)=NUCLEAR FACTOR-Y subunit A11%2C NUCLEAR FACTOR-Y subunit NF-YA11%2C NF-YA transcription factor 11%2C NF-YA subunit 11%2C NF-YA family 11;Note=Similar to nuclear transcription factor Y subunit A-3.;Transcript_evidence=AK318574 (DDBJ%2C Best hit);ORF_evidence=NP_001149075.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=CCAAT-binding transcription factor%2C subunit B (IPR001289);NIAS_FLcDNA=J090045B17;Oryzabase=20922;TENOR=Os02t0776400-01;KEGG=Os02t0776400-01
Chr02	irgsp1_rep	five_prime_UTR	32798226	32798340	.	-	.	Parent=Os02t0776400-01
Chr02	irgsp1_rep	CDS	32798183	32798225	.	-	0	Parent=Os02t0776400-01
Chr02	irgsp1_rep	CDS	32795973	32796079	.	-	2	Parent=Os02t0776400-01
Chr02	irgsp1_rep	CDS	32795803	32795871	.	-	0	Parent=Os02t0776400-01
Chr02	irgsp1_rep	CDS	32795004	32795177	.	-	0	Parent=Os02t0776400-01
Chr02	irgsp1_rep	CDS	32794451	32794870	.	-	0	Parent=Os02t0776400-01
Chr02	irgsp1_rep	three_prime_UTR	32794229	32794450	.	-	.	Parent=Os02t0776400-01
Chr02	irgsp1_rep	mRNA	32822838	32823749	.	-	.	ID=Os02t0776600-00;Name=Os02t0776600-00;Locus_id=Os02g0776600;CGSNL Gene Symbol=BG3;CGSNL Gene Name=BIG GRAIN3;Oryzabase Gene Symbol Synonym(s)=OsaBG3%2C OsBG3;Oryzabase Gene Name Synonym(s)=big grain3%2C big grain 3;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001173166.1 (RefSeq);Oryzabase=22097;TENOR=Os02t0776600-00;KEGG=Os02t0776600-00
Chr02	irgsp1_rep	CDS	32822838	32823749	.	-	0	Parent=Os02t0776600-00
Chr02	irgsp1_rep	mRNA	32827846	32832763	.	+	.	ID=Os02t0776700-01;Name=Os02t0776700-01;Locus_id=Os02g0776700;RAP-DB Gene Symbol Synonym(s)=OsTRFL1;RAP-DB Gene Name Synonym(s)=telomere repeat-binding factor like 1;CGSNL Gene Symbol=TRFL1;CGSNL Gene Name=TELOMERE REPEAT-BINDING FACTOR LIKE 1;Oryzabase Gene Symbol Synonym(s)=OsTRFL1;Oryzabase Gene Name Synonym(s)=telomere repeat-binding factor like 1;Note=Telomere repeat-binding factor like protein%2C Telomere maintenance%2C Telomere length homeostasis;Transcript_evidence=AK070394;ORF_evidence=Q6YZ61;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeobox-like domain superfamily (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930);NIAS_FLcDNA=J023049B09;Manual Curation=August 9%2C 2019;Literature_PMID=29936933;Oryzabase=22834;Expression=AK070394;TENOR=Os02t0776700-01;KEGG=Os02t0776700-01;Subcellular location=nucleus (GO:0005634)
Chr02	irgsp1_rep	five_prime_UTR	32827846	32827998	.	+	.	Parent=Os02t0776700-01
Chr02	irgsp1_rep	five_prime_UTR	32828497	32828538	.	+	.	Parent=Os02t0776700-01
Chr02	irgsp1_rep	CDS	32828539	32828640	.	+	0	Parent=Os02t0776700-01
Chr02	irgsp1_rep	CDS	32828750	32828918	.	+	0	Parent=Os02t0776700-01
Chr02	irgsp1_rep	CDS	32829115	32829176	.	+	2	Parent=Os02t0776700-01
Chr02	irgsp1_rep	CDS	32829871	32830827	.	+	0	Parent=Os02t0776700-01
Chr02	irgsp1_rep	CDS	32831543	32831626	.	+	0	Parent=Os02t0776700-01
Chr02	irgsp1_rep	CDS	32831817	32832077	.	+	0	Parent=Os02t0776700-01
Chr02	irgsp1_rep	CDS	32832152	32832208	.	+	0	Parent=Os02t0776700-01
Chr02	irgsp1_rep	CDS	32832320	32832493	.	+	0	Parent=Os02t0776700-01
Chr02	irgsp1_rep	three_prime_UTR	32832494	32832763	.	+	.	Parent=Os02t0776700-01
Chr02	irgsp1_rep	mRNA	32827926	32832767	.	+	.	ID=Os02t0776700-02;Name=Os02t0776700-02;Locus_id=Os02g0776700;CGSNL Gene Symbol=TRFL1;CGSNL Gene Name=TELOMERE REPEAT-BINDING FACTOR LIKE 1;Oryzabase Gene Symbol Synonym(s)=OsTRFL1;Oryzabase Gene Name Synonym(s)=telomere repeat-binding factor like 1;Note=Similar to Single myb histone 6.;Transcript_evidence=AK102419 (DDBJ%2C Best hit);ORF_evidence=B8AJG9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J033093D07;Oryzabase=22834;Expression=AK102419;TENOR=Os02t0776700-02;KEGG=Os02t0776700-02
Chr02	irgsp1_rep	five_prime_UTR	32827926	32827998	.	+	.	Parent=Os02t0776700-02
Chr02	irgsp1_rep	five_prime_UTR	32828497	32828538	.	+	.	Parent=Os02t0776700-02
Chr02	irgsp1_rep	CDS	32828539	32828640	.	+	0	Parent=Os02t0776700-02
Chr02	irgsp1_rep	CDS	32828750	32828918	.	+	0	Parent=Os02t0776700-02
Chr02	irgsp1_rep	CDS	32829115	32829176	.	+	2	Parent=Os02t0776700-02
Chr02	irgsp1_rep	CDS	32829871	32830827	.	+	0	Parent=Os02t0776700-02
Chr02	irgsp1_rep	CDS	32831543	32831626	.	+	0	Parent=Os02t0776700-02
Chr02	irgsp1_rep	CDS	32831817	32832077	.	+	0	Parent=Os02t0776700-02
Chr02	irgsp1_rep	CDS	32832152	32832208	.	+	0	Parent=Os02t0776700-02
Chr02	irgsp1_rep	CDS	32832320	32832493	.	+	0	Parent=Os02t0776700-02
Chr02	irgsp1_rep	three_prime_UTR	32832494	32832767	.	+	.	Parent=Os02t0776700-02
Chr02	irgsp1_rep	mRNA	32828749	32832742	.	+	.	ID=Os02t0776700-03;Name=Os02t0776700-03;Locus_id=Os02g0776700;CGSNL Gene Symbol=TRFL1;CGSNL Gene Name=TELOMERE REPEAT-BINDING FACTOR LIKE 1;Oryzabase Gene Symbol Synonym(s)=OsTRFL1;Oryzabase Gene Name Synonym(s)=telomere repeat-binding factor like 1;Note=Hypothetical conserved gene.;Transcript_evidence=AK104892 (DDBJ%2C Best hit);ORF_evidence=B8AJG9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=001-045-E03;Oryzabase=22834;Expression=AK104892;TENOR=Os02t0776700-03;KEGG=Os02t0776700-03
Chr02	irgsp1_rep	five_prime_UTR	32828749	32828749	.	+	.	Parent=Os02t0776700-03
Chr02	irgsp1_rep	CDS	32828750	32828918	.	+	0	Parent=Os02t0776700-03
Chr02	irgsp1_rep	CDS	32829115	32829176	.	+	2	Parent=Os02t0776700-03
Chr02	irgsp1_rep	CDS	32829871	32830827	.	+	0	Parent=Os02t0776700-03
Chr02	irgsp1_rep	CDS	32831543	32831626	.	+	0	Parent=Os02t0776700-03
Chr02	irgsp1_rep	CDS	32831814	32832077	.	+	0	Parent=Os02t0776700-03
Chr02	irgsp1_rep	CDS	32832152	32832208	.	+	0	Parent=Os02t0776700-03
Chr02	irgsp1_rep	CDS	32832320	32832493	.	+	0	Parent=Os02t0776700-03
Chr02	irgsp1_rep	three_prime_UTR	32832494	32832742	.	+	.	Parent=Os02t0776700-03
Chr02	irgsp1_rep	mRNA	32832972	32836481	.	-	.	ID=Os02t0776800-01;Name=Os02t0776800-01;Locus_id=Os02g0776800;RAP-DB Gene Symbol Synonym(s)=RPA1A%2C OsRPA70a%2C OsRPA1a%2C RPA1a;RAP-DB Gene Name Synonym(s)=REPLICATION PROTEIN A 1A%2C Replication protein A 70kDa subunit a%2C RPA70kDa subunit a;CGSNL Gene Symbol=RPA1A;CGSNL Gene Name=REPLICATION PROTEIN A 1A;Oryzabase Gene Symbol Synonym(s)=OsRPA70a%2C OsRPA1a%2C RPA1a;Oryzabase Gene Name Synonym(s)=Replication protein A 70kDa subunit a%2C RPA70kDa subunit a;Note=Replication protein A 70 kDa%2C Meiotic and somatic DNA repair;Transcript_evidence=AB042415 (Genbank),AK072308 (Genbank);ORF_evidence=Q6YZ49 (UniProt);GO=Biological Process: DNA replication (GO:0006260),Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677);InterPro=Nucleic acid binding%2C OB-fold%2C tRNA/helicase-type (IPR004365),Replication factor-a protein 1 Rpa1 (IPR004591),Replication factor-A protein 1%2C N-terminal (IPR007199),Nucleic acid-binding%2C OB-fold (IPR012340),Replication factor A%2C C-terminal (IPR013955),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=J023021C21;Manual Curation=January 22%2C 2010;Literature_PMID=9275237,11470540,16428324,19812188;Oryzabase=9117;Expression=AK072308;TENOR=Os02t0776800-01;KEGG=Os02t0776800-01
Chr02	irgsp1_rep	five_prime_UTR	32836246	32836481	.	-	.	Parent=Os02t0776800-01
Chr02	irgsp1_rep	CDS	32835965	32836245	.	-	0	Parent=Os02t0776800-01
Chr02	irgsp1_rep	CDS	32833216	32834905	.	-	1	Parent=Os02t0776800-01
Chr02	irgsp1_rep	three_prime_UTR	32832972	32833215	.	-	.	Parent=Os02t0776800-01
Chr02	irgsp1_rep	mRNA	32832962	32836272	.	-	.	ID=Os02t0776800-02;Name=Os02t0776800-02;Locus_id=Os02g0776800;CGSNL Gene Symbol=RPA1A;CGSNL Gene Name=REPLICATION PROTEIN A 1A;Oryzabase Gene Symbol Synonym(s)=OsRPA70a%2C OsRPA1a%2C RPA1a;Oryzabase Gene Name Synonym(s)=Replication protein A 70kDa subunit a%2C RPA70kDa subunit a;Note=Similar to Replication protein A 70kDa.;Transcript_evidence=AK101212 (DDBJ%2C Best hit);ORF_evidence=Q9AVL8 (UniProt);GO=Biological Process: DNA replication (GO:0006260),Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677);InterPro=Nucleic acid binding%2C OB-fold%2C tRNA/helicase-type (IPR004365),Replication factor-a protein 1 Rpa1 (IPR004591),Replication factor-A protein 1%2C N-terminal (IPR007199),Nucleic acid-binding%2C OB-fold (IPR012340),Replication factor A%2C C-terminal (IPR013955),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=J033031B02;Oryzabase=9117;Expression=AK101212;TENOR=Os02t0776800-02;KEGG=Os02t0776800-02
Chr02	irgsp1_rep	five_prime_UTR	32836246	32836272	.	-	.	Parent=Os02t0776800-02
Chr02	irgsp1_rep	CDS	32835965	32836245	.	-	0	Parent=Os02t0776800-02
Chr02	irgsp1_rep	CDS	32833216	32834905	.	-	1	Parent=Os02t0776800-02
Chr02	irgsp1_rep	three_prime_UTR	32832962	32833215	.	-	.	Parent=Os02t0776800-02
Chr02	irgsp1_rep	mRNA	32832832	32834794	.	-	.	ID=Os02t0776800-03;Name=Os02t0776800-03;Locus_id=Os02g0776800;CGSNL Gene Symbol=RPA1A;CGSNL Gene Name=REPLICATION PROTEIN A 1A;Oryzabase Gene Symbol Synonym(s)=OsRPA70a%2C OsRPA1a%2C RPA1a;Oryzabase Gene Name Synonym(s)=Replication protein A 70kDa subunit a%2C RPA70kDa subunit a;Note=Similar to Replication protein A 70kDa.;Transcript_evidence=AK059230 (DDBJ%2C Best hit);ORF_evidence=Q9AVL8 (UniProt);GO=Biological Process: DNA replication (GO:0006260),Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677);InterPro=Nucleic acid binding%2C OB-fold%2C tRNA/helicase-type (IPR004365),Replication factor-a protein 1 Rpa1 (IPR004591),Nucleic acid-binding%2C OB-fold (IPR012340),Replication factor A%2C C-terminal (IPR013955),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=001-024-E03;Oryzabase=9117;Expression=AK059230;TENOR=Os02t0776800-03
Chr02	irgsp1_rep	five_prime_UTR	32834794	32834794	.	-	.	Parent=Os02t0776800-03
Chr02	irgsp1_rep	CDS	32833216	32834793	.	-	0	Parent=Os02t0776800-03
Chr02	irgsp1_rep	three_prime_UTR	32832832	32833215	.	-	.	Parent=Os02t0776800-03
Chr02	irgsp1_rep	mRNA	32840368	32842456	.	-	.	ID=Os02t0776900-01;Name=Os02t0776900-01;Locus_id=Os02g0776900;RAP-DB Gene Symbol Synonym(s)=GRF1%2C OsGRF1;RAP-DB Gene Name Synonym(s)=GROWTH-REGULATING FACTOR 1%2C growth-regulating factor1;CGSNL Gene Symbol=GRF1;CGSNL Gene Name=GROWTH-REGULATING FACTOR 1;Oryzabase Gene Symbol Synonym(s)=OsGRF1;Oryzabase Gene Name Synonym(s)=growth-regulating factor1;Note=Transcription activator%2C Gibberellin (GA)-induced stem elongation;Transcript_evidence=BK004856 (DDBJ),AF201895 (DDBJ);ORF_evidence=Q6AWY8 (UniProt),Q9SDZ5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides (GO:0016818);InterPro=WRC (IPR014977),Glutamine-Leucine-Glutamine%2C QLQ (IPR014978);Manual Curation=July 22%2C 2010;Literature_PMID=10712532,15295073;Oryzabase=3074;TENOR=Os02t0776900-01
Chr02	irgsp1_rep	five_prime_UTR	32842265	32842456	.	-	.	Parent=Os02t0776900-01
Chr02	irgsp1_rep	CDS	32842042	32842264	.	-	0	Parent=Os02t0776900-01
Chr02	irgsp1_rep	CDS	32840983	32841945	.	-	2	Parent=Os02t0776900-01
Chr02	irgsp1_rep	CDS	32840860	32840867	.	-	2	Parent=Os02t0776900-01
Chr02	irgsp1_rep	three_prime_UTR	32840368	32840859	.	-	.	Parent=Os02t0776900-01
Chr02	irgsp1_rep	mRNA	32840364	32842423	.	-	.	ID=Os02t0776900-02;Name=Os02t0776900-02;Locus_id=Os02g0776900;CGSNL Gene Symbol=GRF1;CGSNL Gene Name=GROWTH-REGULATING FACTOR 1;Oryzabase Gene Symbol Synonym(s)=OsGRF1;Oryzabase Gene Name Synonym(s)=growth-regulating factor1;Note=Similar to Growth-regulating factor 1.;Transcript_evidence=AK109652 (DDBJ%2C Best hit);ORF_evidence=Q9SDZ5 (UniProt);NIAS_FLcDNA=002-140-B03;Oryzabase=3074;TENOR=Os02t0776900-02
Chr02	irgsp1_rep	five_prime_UTR	32842252	32842423	.	-	.	Parent=Os02t0776900-02
Chr02	irgsp1_rep	CDS	32842242	32842251	.	-	0	Parent=Os02t0776900-02
Chr02	irgsp1_rep	CDS	32840983	32841693	.	-	2	Parent=Os02t0776900-02
Chr02	irgsp1_rep	CDS	32840860	32840867	.	-	2	Parent=Os02t0776900-02
Chr02	irgsp1_rep	three_prime_UTR	32840364	32840859	.	-	.	Parent=Os02t0776900-02
Chr02	irgsp1_rep	mRNA	32855323	32856116	.	-	.	ID=Os02t0777001-00;Name=Os02t0777001-00;Locus_id=Os02g0777001;Note=Non-protein coding transcript.;Transcript_evidence=CT835306 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os02t0777001-00
Chr02	irgsp1_rep	exon	32855924	32856116	.	-	.	Parent=Os02t0777001-00
Chr02	irgsp1_rep	exon	32855323	32855917	.	-	.	Parent=Os02t0777001-00
Chr02	irgsp1_rep	mRNA	32858853	32870397	.	-	.	ID=Os02t0777100-01;Name=Os02t0777100-01;Locus_id=Os02g0777100;Note=DENN domain containing protein.;Transcript_evidence=AK067308 (DDBJ%2C Best hit);ORF_evidence=NP_568527.2 (RefSeq);InterPro=DENN (IPR001194),dDENN (IPR005112),uDENN (IPR005113);NIAS_FLcDNA=J013100G23;Expression=AK067308;TENOR=Os02t0777100-01;KEGG=Os02t0777100-01
Chr02	irgsp1_rep	five_prime_UTR	32870037	32870397	.	-	.	Parent=Os02t0777100-01
Chr02	irgsp1_rep	five_prime_UTR	32869171	32869182	.	-	.	Parent=Os02t0777100-01
Chr02	irgsp1_rep	CDS	32868868	32869170	.	-	0	Parent=Os02t0777100-01
Chr02	irgsp1_rep	CDS	32867184	32867375	.	-	0	Parent=Os02t0777100-01
Chr02	irgsp1_rep	CDS	32867017	32867100	.	-	0	Parent=Os02t0777100-01
Chr02	irgsp1_rep	CDS	32866750	32866809	.	-	0	Parent=Os02t0777100-01
Chr02	irgsp1_rep	CDS	32866563	32866607	.	-	0	Parent=Os02t0777100-01
Chr02	irgsp1_rep	CDS	32866295	32866494	.	-	0	Parent=Os02t0777100-01
Chr02	irgsp1_rep	CDS	32864989	32865543	.	-	1	Parent=Os02t0777100-01
Chr02	irgsp1_rep	CDS	32864696	32864822	.	-	1	Parent=Os02t0777100-01
Chr02	irgsp1_rep	CDS	32864410	32864607	.	-	0	Parent=Os02t0777100-01
Chr02	irgsp1_rep	CDS	32864201	32864290	.	-	0	Parent=Os02t0777100-01
Chr02	irgsp1_rep	CDS	32863341	32863403	.	-	0	Parent=Os02t0777100-01
Chr02	irgsp1_rep	CDS	32862819	32862893	.	-	0	Parent=Os02t0777100-01
Chr02	irgsp1_rep	CDS	32862679	32862729	.	-	0	Parent=Os02t0777100-01
Chr02	irgsp1_rep	CDS	32862089	32862166	.	-	0	Parent=Os02t0777100-01
Chr02	irgsp1_rep	CDS	32861676	32861810	.	-	0	Parent=Os02t0777100-01
Chr02	irgsp1_rep	CDS	32861242	32861349	.	-	0	Parent=Os02t0777100-01
Chr02	irgsp1_rep	CDS	32861013	32861078	.	-	0	Parent=Os02t0777100-01
Chr02	irgsp1_rep	CDS	32860271	32860339	.	-	0	Parent=Os02t0777100-01
Chr02	irgsp1_rep	three_prime_UTR	32860225	32860270	.	-	.	Parent=Os02t0777100-01
Chr02	irgsp1_rep	three_prime_UTR	32858853	32859425	.	-	.	Parent=Os02t0777100-01
Chr02	irgsp1_rep	mRNA	32867839	32870248	.	-	.	ID=Os02t0777100-02;Name=Os02t0777100-02;Locus_id=Os02g0777100;Note=Hypothetical conserved gene.;Transcript_evidence=AK060140 (DDBJ%2C Best hit);ORF_evidence=Q6ZGD0 (UniProt);NIAS_FLcDNA=006-309-G04;Expression=AK060140;TENOR=Os02t0777100-02;KEGG=Os02t0777100-02
Chr02	irgsp1_rep	five_prime_UTR	32870037	32870248	.	-	.	Parent=Os02t0777100-02
Chr02	irgsp1_rep	five_prime_UTR	32869171	32869182	.	-	.	Parent=Os02t0777100-02
Chr02	irgsp1_rep	CDS	32868868	32869170	.	-	0	Parent=Os02t0777100-02
Chr02	irgsp1_rep	CDS	32868434	32868592	.	-	0	Parent=Os02t0777100-02
Chr02	irgsp1_rep	three_prime_UTR	32867839	32868433	.	-	.	Parent=Os02t0777100-02
Chr02	irgsp1_rep	mRNA	32867841	32870223	.	-	.	ID=Os02t0777100-03;Name=Os02t0777100-03;Locus_id=Os02g0777100;Note=Similar to predicted protein.;Transcript_evidence=AK100528 (DDBJ%2C Best hit);ORF_evidence=Q6ZGD0 (UniProt);NIAS_FLcDNA=J023101F24;Expression=AK100528;TENOR=Os02t0777100-03;KEGG=Os02t0777100-03
Chr02	irgsp1_rep	five_prime_UTR	32869171	32870223	.	-	.	Parent=Os02t0777100-03
Chr02	irgsp1_rep	CDS	32868802	32869170	.	-	0	Parent=Os02t0777100-03
Chr02	irgsp1_rep	three_prime_UTR	32867841	32868801	.	-	.	Parent=Os02t0777100-03
Chr02	irgsp1_rep	mRNA	32860000	32861812	.	-	.	ID=Os02t0777100-04;Name=Os02t0777100-04;Locus_id=Os02g0777100;Note=Similar to predicted protein.;Transcript_evidence=AK061634 (DDBJ%2C Best hit);ORF_evidence=NP_568527.2 (RefSeq);InterPro=dDENN (IPR005112);NIAS_FLcDNA=001-036-A08;Expression=AK061634;TENOR=Os02t0777100-04;KEGG=Os02t0777100-04
Chr02	irgsp1_rep	five_prime_UTR	32861811	32861812	.	-	.	Parent=Os02t0777100-04
Chr02	irgsp1_rep	CDS	32861676	32861810	.	-	0	Parent=Os02t0777100-04
Chr02	irgsp1_rep	CDS	32861242	32861349	.	-	0	Parent=Os02t0777100-04
Chr02	irgsp1_rep	CDS	32861013	32861078	.	-	0	Parent=Os02t0777100-04
Chr02	irgsp1_rep	CDS	32860271	32860339	.	-	0	Parent=Os02t0777100-04
Chr02	irgsp1_rep	three_prime_UTR	32860000	32860270	.	-	.	Parent=Os02t0777100-04
Chr02	irgsp1_rep	mRNA	32882405	32889742	.	+	.	ID=Os02t0777400-01;Name=Os02t0777400-01;Locus_id=Os02g0777400;RAP-DB Gene Symbol Synonym(s)=OsER2;RAP-DB Gene Name Synonym(s)=OsERECTA2;CGSNL Gene Symbol=RLCK85;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 85;Oryzabase Gene Symbol Synonym(s)=OsRLCK85%2C OsER2%2C ER2;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 85%2C ERECTA 2;Note=ERECTA family protein%2C OsERECTA2 receptor-like kinase%2C Regulation of cell proliferation and cell growth%2C Regulation of germline cell specification during megasporogenesis;Transcript_evidence=AK060260 (truncated),JN991005,XM_015768481;ORF_evidence=I1Z695;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=Leucine-rich repeat domain superfamily (IPR032675),Protein kinase-like domain superfamily (IPR011009),Leucine-rich repeat-containing N-terminal%2C plant-type (IPR013210),Protein kinase domain (IPR000719),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat (IPR001611),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=001-004-H01 (truncated);Manual Curation=february 20%2C 2020;Literature_PMID=32054780,29692796;Oryzabase=18796;TENOR=Os02t0777400-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	32882405	32882649	.	+	.	Parent=Os02t0777400-01
Chr02	irgsp1_rep	CDS	32882650	32882722	.	+	0	Parent=Os02t0777400-01
Chr02	irgsp1_rep	CDS	32883348	32883489	.	+	2	Parent=Os02t0777400-01
Chr02	irgsp1_rep	CDS	32883574	32883645	.	+	1	Parent=Os02t0777400-01
Chr02	irgsp1_rep	CDS	32883750	32883821	.	+	1	Parent=Os02t0777400-01
Chr02	irgsp1_rep	CDS	32883919	32883990	.	+	1	Parent=Os02t0777400-01
Chr02	irgsp1_rep	CDS	32884080	32884151	.	+	1	Parent=Os02t0777400-01
Chr02	irgsp1_rep	CDS	32884218	32884289	.	+	1	Parent=Os02t0777400-01
Chr02	irgsp1_rep	CDS	32884508	32884579	.	+	1	Parent=Os02t0777400-01
Chr02	irgsp1_rep	CDS	32884668	32884739	.	+	1	Parent=Os02t0777400-01
Chr02	irgsp1_rep	CDS	32884826	32884894	.	+	1	Parent=Os02t0777400-01
Chr02	irgsp1_rep	CDS	32884990	32885061	.	+	1	Parent=Os02t0777400-01
Chr02	irgsp1_rep	CDS	32885175	32885246	.	+	1	Parent=Os02t0777400-01
Chr02	irgsp1_rep	CDS	32885345	32885416	.	+	1	Parent=Os02t0777400-01
Chr02	irgsp1_rep	CDS	32885504	32885575	.	+	1	Parent=Os02t0777400-01
Chr02	irgsp1_rep	CDS	32885660	32885731	.	+	1	Parent=Os02t0777400-01
Chr02	irgsp1_rep	CDS	32885806	32885877	.	+	1	Parent=Os02t0777400-01
Chr02	irgsp1_rep	CDS	32885977	32886048	.	+	1	Parent=Os02t0777400-01
Chr02	irgsp1_rep	CDS	32886130	32886201	.	+	1	Parent=Os02t0777400-01
Chr02	irgsp1_rep	CDS	32886289	32886360	.	+	1	Parent=Os02t0777400-01
Chr02	irgsp1_rep	CDS	32886439	32886510	.	+	1	Parent=Os02t0777400-01
Chr02	irgsp1_rep	CDS	32886657	32886725	.	+	1	Parent=Os02t0777400-01
Chr02	irgsp1_rep	CDS	32886822	32886893	.	+	1	Parent=Os02t0777400-01
Chr02	irgsp1_rep	CDS	32886986	32887059	.	+	1	Parent=Os02t0777400-01
Chr02	irgsp1_rep	CDS	32887150	32887278	.	+	2	Parent=Os02t0777400-01
Chr02	irgsp1_rep	CDS	32887473	32887838	.	+	2	Parent=Os02t0777400-01
Chr02	irgsp1_rep	CDS	32888088	32888461	.	+	2	Parent=Os02t0777400-01
Chr02	irgsp1_rep	CDS	32889029	32889397	.	+	0	Parent=Os02t0777400-01
Chr02	irgsp1_rep	three_prime_UTR	32889398	32889742	.	+	.	Parent=Os02t0777400-01
Chr02	irgsp1_rep	mRNA	32907207	32913700	.	+	.	ID=Os02t0777700-00;Name=Os02t0777700-00;Locus_id=Os02g0777700;Note=Similar to XI-I (Myosin-like protein XI-I)%3B motor/ protein binding.;Transcript_evidence=AK066876 (DDBJ%2C Secondary hit);ORF_evidence=NP_195046.3 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048),Dilute (IPR002710),Dil domain (IPR018444);Expression=AK066876;TENOR=Os02t0777700-00;KEGG=Os02t0777700-00
Chr02	irgsp1_rep	five_prime_UTR	32907207	32907208	.	+	.	Parent=Os02t0777700-00
Chr02	irgsp1_rep	CDS	32907209	32907340	.	+	0	Parent=Os02t0777700-00
Chr02	irgsp1_rep	CDS	32907615	32907734	.	+	0	Parent=Os02t0777700-00
Chr02	irgsp1_rep	CDS	32908320	32908418	.	+	0	Parent=Os02t0777700-00
Chr02	irgsp1_rep	CDS	32908709	32908930	.	+	0	Parent=Os02t0777700-00
Chr02	irgsp1_rep	CDS	32909215	32909354	.	+	0	Parent=Os02t0777700-00
Chr02	irgsp1_rep	CDS	32909483	32909594	.	+	1	Parent=Os02t0777700-00
Chr02	irgsp1_rep	CDS	32909761	32909811	.	+	0	Parent=Os02t0777700-00
Chr02	irgsp1_rep	CDS	32909891	32909980	.	+	0	Parent=Os02t0777700-00
Chr02	irgsp1_rep	CDS	32910137	32910307	.	+	0	Parent=Os02t0777700-00
Chr02	irgsp1_rep	CDS	32910404	32910556	.	+	0	Parent=Os02t0777700-00
Chr02	irgsp1_rep	CDS	32911367	32911543	.	+	0	Parent=Os02t0777700-00
Chr02	irgsp1_rep	CDS	32911638	32911775	.	+	0	Parent=Os02t0777700-00
Chr02	irgsp1_rep	CDS	32911870	32911940	.	+	0	Parent=Os02t0777700-00
Chr02	irgsp1_rep	CDS	32912344	32912443	.	+	1	Parent=Os02t0777700-00
Chr02	irgsp1_rep	CDS	32912663	32912719	.	+	0	Parent=Os02t0777700-00
Chr02	irgsp1_rep	CDS	32912808	32912864	.	+	0	Parent=Os02t0777700-00
Chr02	irgsp1_rep	CDS	32912958	32913038	.	+	0	Parent=Os02t0777700-00
Chr02	irgsp1_rep	CDS	32913121	32913203	.	+	0	Parent=Os02t0777700-00
Chr02	irgsp1_rep	CDS	32913338	32913473	.	+	1	Parent=Os02t0777700-00
Chr02	irgsp1_rep	three_prime_UTR	32913474	32913700	.	+	.	Parent=Os02t0777700-00
Chr02	irgsp1_rep	mRNA	32915472	32918514	.	-	.	ID=Os02t0777800-01;Name=Os02t0777800-01;Locus_id=Os02g0777800;CGSNL Gene Symbol=RLCK86;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 86;Oryzabase Gene Symbol Synonym(s)=OsRLCK86%2C PTK2%2C OsPTK2;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 86%2C Protein Tyrosine Kinase 2;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK066978 (DDBJ%2C Best hit);ORF_evidence=A3ABX1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J013090P22;Oryzabase=18797;TENOR=Os02t0777800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	32918394	32918514	.	-	.	Parent=Os02t0777800-01
Chr02	irgsp1_rep	CDS	32918010	32918393	.	-	0	Parent=Os02t0777800-01
Chr02	irgsp1_rep	CDS	32917765	32917923	.	-	0	Parent=Os02t0777800-01
Chr02	irgsp1_rep	three_prime_UTR	32915472	32917764	.	-	.	Parent=Os02t0777800-01
Chr02	irgsp1_rep	mRNA	32932386	32932924	.	+	.	ID=Os02t0777950-01;Name=Os02t0777950-01;Locus_id=Os02g0777950;Note=Non-protein coding transcript.;Transcript_evidence=AK242877 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090078H24;TENOR=Os02t0777950-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	exon	32932386	32932924	.	+	.	Parent=Os02t0777950-01
Chr02	irgsp1_rep	mRNA	32934164	32945149	.	+	.	ID=Os02t0778200-01;Name=Os02t0778200-01;Locus_id=Os02g0778200;Note=Isoleucyl-tRNA synthetase domain containing protein.;Transcript_evidence=AK065948 (DDBJ%2C Best hit);ORF_evidence=NP_199714.2 (RefSeq);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: isoleucyl-tRNA aminoacylation (GO:0006428),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: isoleucine-tRNA ligase activity (GO:0004822),Molecular Function: ATP binding (GO:0005524);InterPro=Aminoacyl-tRNA synthetase%2C class I%2C conserved site (IPR001412),Aminoacyl-tRNA synthetase%2C class Ia (IPR002300),Isoleucyl-tRNA synthetase (IPR002301),Valyl/Leucyl/Isoleucyl-tRNA synthetase%2C class Ia%2C editing domain (IPR009008),Aminoacyl-tRNA synthetase%2C class 1a%2C anticodon-binding (IPR009080),Zinc finger%2C DNA glycosylase/AP lyase/isoleucyl tRNA synthetase (IPR010663),Valyl/Leucyl/Isoleucyl-tRNA synthetase%2C class I%2C anticodon-binding (IPR013155),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Isoleucyl-tRNA synthetase%2C type 1 (IPR023585);NIAS_FLcDNA=J013046B21;Expression=AK065948;TENOR=Os02t0778200-01;KEGG=Os02t0778200-01 (EC:6.1.1.5)
Chr02	irgsp1_rep	five_prime_UTR	32934164	32934298	.	+	.	Parent=Os02t0778200-01
Chr02	irgsp1_rep	CDS	32934299	32934322	.	+	0	Parent=Os02t0778200-01
Chr02	irgsp1_rep	CDS	32934437	32934596	.	+	0	Parent=Os02t0778200-01
Chr02	irgsp1_rep	CDS	32935759	32935913	.	+	2	Parent=Os02t0778200-01
Chr02	irgsp1_rep	CDS	32935993	32936094	.	+	0	Parent=Os02t0778200-01
Chr02	irgsp1_rep	CDS	32936526	32936593	.	+	0	Parent=Os02t0778200-01
Chr02	irgsp1_rep	CDS	32936742	32936856	.	+	1	Parent=Os02t0778200-01
Chr02	irgsp1_rep	CDS	32937049	32937117	.	+	0	Parent=Os02t0778200-01
Chr02	irgsp1_rep	CDS	32937449	32937556	.	+	0	Parent=Os02t0778200-01
Chr02	irgsp1_rep	CDS	32938024	32938168	.	+	0	Parent=Os02t0778200-01
Chr02	irgsp1_rep	CDS	32938752	32938983	.	+	2	Parent=Os02t0778200-01
Chr02	irgsp1_rep	CDS	32939074	32939360	.	+	1	Parent=Os02t0778200-01
Chr02	irgsp1_rep	CDS	32939458	32939594	.	+	2	Parent=Os02t0778200-01
Chr02	irgsp1_rep	CDS	32940027	32940174	.	+	0	Parent=Os02t0778200-01
Chr02	irgsp1_rep	CDS	32940971	32941102	.	+	2	Parent=Os02t0778200-01
Chr02	irgsp1_rep	CDS	32941746	32941874	.	+	2	Parent=Os02t0778200-01
Chr02	irgsp1_rep	CDS	32942214	32942341	.	+	2	Parent=Os02t0778200-01
Chr02	irgsp1_rep	CDS	32942418	32942582	.	+	0	Parent=Os02t0778200-01
Chr02	irgsp1_rep	CDS	32942969	32943094	.	+	0	Parent=Os02t0778200-01
Chr02	irgsp1_rep	CDS	32943595	32943668	.	+	0	Parent=Os02t0778200-01
Chr02	irgsp1_rep	CDS	32943792	32944041	.	+	1	Parent=Os02t0778200-01
Chr02	irgsp1_rep	CDS	32944382	32944561	.	+	0	Parent=Os02t0778200-01
Chr02	irgsp1_rep	CDS	32944635	32944877	.	+	0	Parent=Os02t0778200-01
Chr02	irgsp1_rep	three_prime_UTR	32944878	32945149	.	+	.	Parent=Os02t0778200-01
Chr02	irgsp1_rep	mRNA	32942213	32945149	.	+	.	ID=Os02t0778200-02;Name=Os02t0778200-02;Locus_id=Os02g0778200;Note=Similar to predicted protein.;Transcript_evidence=AK121954 (DDBJ%2C Best hit);ORF_evidence=NP_199714.2 (RefSeq);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: isoleucine-tRNA ligase activity (GO:0004822),Molecular Function: ATP binding (GO:0005524);InterPro=Aminoacyl-tRNA synthetase%2C class Ia (IPR002300),Aminoacyl-tRNA synthetase%2C class 1a%2C anticodon-binding (IPR009080),Zinc finger%2C DNA glycosylase/AP lyase/isoleucyl tRNA synthetase (IPR010663),Valyl/Leucyl/Isoleucyl-tRNA synthetase%2C class I%2C anticodon-binding (IPR013155),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Isoleucyl-tRNA synthetase%2C type 1 (IPR023585);NIAS_FLcDNA=J033107M07;Expression=AK121954;TENOR=Os02t0778200-02;KEGG=Os02t0778200-02 (EC:6.1.1.5)
Chr02	irgsp1_rep	CDS	32942213	32942341	.	+	0	Parent=Os02t0778200-02
Chr02	irgsp1_rep	CDS	32942418	32942582	.	+	0	Parent=Os02t0778200-02
Chr02	irgsp1_rep	CDS	32942969	32943094	.	+	0	Parent=Os02t0778200-02
Chr02	irgsp1_rep	CDS	32943595	32943668	.	+	0	Parent=Os02t0778200-02
Chr02	irgsp1_rep	CDS	32943792	32944041	.	+	1	Parent=Os02t0778200-02
Chr02	irgsp1_rep	CDS	32944382	32944561	.	+	0	Parent=Os02t0778200-02
Chr02	irgsp1_rep	CDS	32944635	32944877	.	+	0	Parent=Os02t0778200-02
Chr02	irgsp1_rep	three_prime_UTR	32944878	32945149	.	+	.	Parent=Os02t0778200-02
Chr02	irgsp1_rep	mRNA	32945678	32950691	.	+	.	ID=Os02t0778300-01;Name=Os02t0778300-01;Locus_id=Os02g0778300;Note=Conserved hypothetical protein.;Transcript_evidence=AK058466 (DDBJ%2C Best hit);ORF_evidence=B8AJH6 (UniProt);NIAS_FLcDNA=001-016-A12;Expression=AK058466;TENOR=Os02t0778300-01;KEGG=Os02t0778300-01
Chr02	irgsp1_rep	five_prime_UTR	32945678	32945996	.	+	.	Parent=Os02t0778300-01
Chr02	irgsp1_rep	CDS	32945997	32946061	.	+	0	Parent=Os02t0778300-01
Chr02	irgsp1_rep	CDS	32946597	32946684	.	+	1	Parent=Os02t0778300-01
Chr02	irgsp1_rep	CDS	32946910	32947018	.	+	0	Parent=Os02t0778300-01
Chr02	irgsp1_rep	CDS	32947146	32947195	.	+	2	Parent=Os02t0778300-01
Chr02	irgsp1_rep	CDS	32947330	32947396	.	+	0	Parent=Os02t0778300-01
Chr02	irgsp1_rep	CDS	32947638	32947710	.	+	2	Parent=Os02t0778300-01
Chr02	irgsp1_rep	CDS	32947900	32947955	.	+	1	Parent=Os02t0778300-01
Chr02	irgsp1_rep	CDS	32948236	32948338	.	+	2	Parent=Os02t0778300-01
Chr02	irgsp1_rep	CDS	32948884	32948965	.	+	1	Parent=Os02t0778300-01
Chr02	irgsp1_rep	CDS	32949224	32949286	.	+	0	Parent=Os02t0778300-01
Chr02	irgsp1_rep	CDS	32949425	32949484	.	+	0	Parent=Os02t0778300-01
Chr02	irgsp1_rep	CDS	32949863	32949955	.	+	0	Parent=Os02t0778300-01
Chr02	irgsp1_rep	CDS	32950068	32950130	.	+	0	Parent=Os02t0778300-01
Chr02	irgsp1_rep	CDS	32950206	32950304	.	+	0	Parent=Os02t0778300-01
Chr02	irgsp1_rep	three_prime_UTR	32950305	32950691	.	+	.	Parent=Os02t0778300-01
Chr02	irgsp1_rep	mRNA	32945682	32950731	.	+	.	ID=Os02t0778300-02;Name=Os02t0778300-02;Locus_id=Os02g0778300;Note=Similar to predicted protein.;Transcript_evidence=AK100242 (DDBJ%2C Best hit);ORF_evidence=B8AJH6 (UniProt);NIAS_FLcDNA=J023055F23;Expression=AK100242;TENOR=Os02t0778300-02;KEGG=Os02t0778300-02
Chr02	irgsp1_rep	five_prime_UTR	32945682	32946561	.	+	.	Parent=Os02t0778300-02
Chr02	irgsp1_rep	CDS	32946562	32946684	.	+	0	Parent=Os02t0778300-02
Chr02	irgsp1_rep	CDS	32946910	32947018	.	+	0	Parent=Os02t0778300-02
Chr02	irgsp1_rep	CDS	32947146	32947195	.	+	2	Parent=Os02t0778300-02
Chr02	irgsp1_rep	CDS	32947330	32947396	.	+	0	Parent=Os02t0778300-02
Chr02	irgsp1_rep	CDS	32947638	32947710	.	+	2	Parent=Os02t0778300-02
Chr02	irgsp1_rep	CDS	32947900	32947955	.	+	1	Parent=Os02t0778300-02
Chr02	irgsp1_rep	CDS	32948236	32948338	.	+	2	Parent=Os02t0778300-02
Chr02	irgsp1_rep	CDS	32948884	32948965	.	+	1	Parent=Os02t0778300-02
Chr02	irgsp1_rep	CDS	32949224	32949286	.	+	0	Parent=Os02t0778300-02
Chr02	irgsp1_rep	CDS	32949425	32949484	.	+	0	Parent=Os02t0778300-02
Chr02	irgsp1_rep	CDS	32949863	32949955	.	+	0	Parent=Os02t0778300-02
Chr02	irgsp1_rep	CDS	32950068	32950130	.	+	0	Parent=Os02t0778300-02
Chr02	irgsp1_rep	CDS	32950206	32950304	.	+	0	Parent=Os02t0778300-02
Chr02	irgsp1_rep	three_prime_UTR	32950305	32950731	.	+	.	Parent=Os02t0778300-02
Chr02	irgsp1_rep	mRNA	32950356	32950690	.	+	.	ID=Os02t0778300-03;Name=Os02t0778300-03;Locus_id=Os02g0778300;Note=Non-protein coding transcript.;Transcript_evidence=AK058586 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-017-G02;TENOR=Os02t0778300-03
Chr02	irgsp1_rep	exon	32950356	32950690	.	+	.	Parent=Os02t0778300-03
Chr02	irgsp1_rep	mRNA	32951771	32955071	.	+	.	ID=Os02t0778400-01;Name=Os02t0778400-01;Locus_id=Os02g0778400;Note=Similar to UMP/CMP kinase a (EC 2.7.1.48).;Transcript_evidence=AK103372 (DDBJ%2C Best hit);ORF_evidence=Q9SE48 (UniProt);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Biological Process: nucleotide phosphorylation (GO:0046939),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphotransferase activity%2C phosphate group as acceptor (GO:0016776),Molecular Function: nucleotide kinase activity (GO:0019201),Molecular Function: nucleobase-containing compound kinase activity (GO:0019205);InterPro=Adenylate kinase (IPR000850),UMP-CMP kinase (IPR006266);NIAS_FLcDNA=J033127A22;Expression=AK103372;TENOR=Os02t0778400-01;KEGG=Os02t0778400-01 (EC:2.7.1.48%2C EC:2.7.4.14)
Chr02	irgsp1_rep	five_prime_UTR	32951771	32951860	.	+	.	Parent=Os02t0778400-01
Chr02	irgsp1_rep	five_prime_UTR	32952042	32952043	.	+	.	Parent=Os02t0778400-01
Chr02	irgsp1_rep	CDS	32952044	32952088	.	+	0	Parent=Os02t0778400-01
Chr02	irgsp1_rep	CDS	32952566	32952620	.	+	0	Parent=Os02t0778400-01
Chr02	irgsp1_rep	CDS	32952807	32952924	.	+	2	Parent=Os02t0778400-01
Chr02	irgsp1_rep	CDS	32953074	32953230	.	+	1	Parent=Os02t0778400-01
Chr02	irgsp1_rep	CDS	32953397	32953477	.	+	0	Parent=Os02t0778400-01
Chr02	irgsp1_rep	CDS	32953581	32953688	.	+	0	Parent=Os02t0778400-01
Chr02	irgsp1_rep	CDS	32953939	32954010	.	+	0	Parent=Os02t0778400-01
Chr02	irgsp1_rep	CDS	32954112	32954120	.	+	0	Parent=Os02t0778400-01
Chr02	irgsp1_rep	three_prime_UTR	32954121	32954170	.	+	.	Parent=Os02t0778400-01
Chr02	irgsp1_rep	three_prime_UTR	32954725	32955071	.	+	.	Parent=Os02t0778400-01
Chr02	irgsp1_rep	mRNA	32957456	32961345	.	+	.	ID=Os02t0778500-01;Name=Os02t0778500-01;Locus_id=Os02g0778500;Note=Chalcone isomerase domain containing protein.;Transcript_evidence=AK107205 (DDBJ%2C Best hit);ORF_evidence=A3ABX6 (UniProt);GO=Biological Process: cellular modified amino acid biosynthetic process (GO:0042398),Molecular Function: intramolecular lyase activity (GO:0016872);InterPro=Chalcone isomerase%2C subgroup (IPR003466),Chalcone isomerase (IPR016087);NIAS_FLcDNA=002-125-B08;Expression=AK107205;TENOR=Os02t0778500-01;KEGG=Os02t0778500-01
Chr02	irgsp1_rep	five_prime_UTR	32957456	32957722	.	+	.	Parent=Os02t0778500-01
Chr02	irgsp1_rep	five_prime_UTR	32958380	32958456	.	+	.	Parent=Os02t0778500-01
Chr02	irgsp1_rep	CDS	32958457	32958971	.	+	0	Parent=Os02t0778500-01
Chr02	irgsp1_rep	CDS	32959093	32959303	.	+	1	Parent=Os02t0778500-01
Chr02	irgsp1_rep	CDS	32959504	32959579	.	+	0	Parent=Os02t0778500-01
Chr02	irgsp1_rep	CDS	32959682	32959784	.	+	2	Parent=Os02t0778500-01
Chr02	irgsp1_rep	CDS	32960108	32960176	.	+	1	Parent=Os02t0778500-01
Chr02	irgsp1_rep	CDS	32960292	32960328	.	+	1	Parent=Os02t0778500-01
Chr02	irgsp1_rep	CDS	32960411	32960485	.	+	0	Parent=Os02t0778500-01
Chr02	irgsp1_rep	CDS	32960559	32960610	.	+	0	Parent=Os02t0778500-01
Chr02	irgsp1_rep	CDS	32960695	32960739	.	+	2	Parent=Os02t0778500-01
Chr02	irgsp1_rep	CDS	32960849	32960949	.	+	2	Parent=Os02t0778500-01
Chr02	irgsp1_rep	three_prime_UTR	32960950	32961345	.	+	.	Parent=Os02t0778500-01
Chr02	irgsp1_rep	mRNA	32961965	32963974	.	+	.	ID=Os02t0778600-01;Name=Os02t0778600-01;Locus_id=Os02g0778600;CGSNL Gene Symbol=GH9B18;CGSNL Gene Name=GLYCOSIDE HYDROLASE 9B18;Oryzabase Gene Symbol Synonym(s)=OsGH9B18;Oryzabase Gene Name Synonym(s)=glycoside hydrolase OsGH9B18%2C glycoside hydrolase 9B18;Note=Similar to CEL5%3DCELLULASE 5 (Fragment).;Transcript_evidence=AK100098 (DDBJ%2C Best hit),AK100190 (DDBJ%2C Best hit),AK106971 (DDBJ%2C Best hit);ORF_evidence=B6U6U5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 9 (IPR001701),Six-hairpin glycosidase-like (IPR008928),Six-hairpin glycosidase (IPR012341),Glycoside hydrolase%2C family 9%2C active site (IPR018221);NIAS_FLcDNA=J023004D19,J023035K01,002-119-G05;Oryzabase=11718;TENOR=Os02t0778600-01
Chr02	irgsp1_rep	five_prime_UTR	32961965	32962046	.	+	.	Parent=Os02t0778600-01
Chr02	irgsp1_rep	CDS	32962047	32962295	.	+	0	Parent=Os02t0778600-01
Chr02	irgsp1_rep	CDS	32962380	32962790	.	+	0	Parent=Os02t0778600-01
Chr02	irgsp1_rep	CDS	32962890	32962967	.	+	0	Parent=Os02t0778600-01
Chr02	irgsp1_rep	CDS	32963058	32963825	.	+	0	Parent=Os02t0778600-01
Chr02	irgsp1_rep	three_prime_UTR	32963826	32963974	.	+	.	Parent=Os02t0778600-01
Chr02	irgsp1_rep	mRNA	32962085	32963763	.	-	.	ID=Os02t0778633-00;Name=Os02t0778633-00;Locus_id=Os02g0778633;Note=Hypothetical protein.;Transcript_evidence=tplb0042g22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0778633-00
Chr02	irgsp1_rep	five_prime_UTR	32963763	32963763	.	-	.	Parent=Os02t0778633-00
Chr02	irgsp1_rep	CDS	32963021	32963762	.	-	0	Parent=Os02t0778633-00
Chr02	irgsp1_rep	CDS	32962888	32962939	.	-	2	Parent=Os02t0778633-00
Chr02	irgsp1_rep	CDS	32962757	32962787	.	-	1	Parent=Os02t0778633-00
Chr02	irgsp1_rep	three_prime_UTR	32962372	32962756	.	-	.	Parent=Os02t0778633-00
Chr02	irgsp1_rep	three_prime_UTR	32962085	32962286	.	-	.	Parent=Os02t0778633-00
Chr02	irgsp1_rep	mRNA	32965751	32968749	.	-	.	ID=Os02t0778666-00;Name=Os02t0778666-00;Locus_id=Os02g0778666;Note=Non-protein coding transcript.;Transcript_evidence=tplb0032c06 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os02t0778666-00
Chr02	irgsp1_rep	exon	32967943	32968749	.	-	.	Parent=Os02t0778666-00
Chr02	irgsp1_rep	exon	32965751	32966156	.	-	.	Parent=Os02t0778666-00
Chr02	irgsp1_rep	mRNA	32965843	32968662	.	+	.	ID=Os02t0778700-01;Name=Os02t0778700-01;Locus_id=Os02g0778700;Note=Similar to MTD1.;Transcript_evidence=AK289225 (DDBJ%2C Best hit);ORF_evidence=B4FRH4 (UniProt);NIAS_FLcDNA=J100068K23;TENOR=Os02t0778700-01;KEGG=Os02t0778700-01
Chr02	irgsp1_rep	five_prime_UTR	32965843	32965872	.	+	.	Parent=Os02t0778700-01
Chr02	irgsp1_rep	CDS	32965873	32966159	.	+	0	Parent=Os02t0778700-01
Chr02	irgsp1_rep	CDS	32967946	32968432	.	+	1	Parent=Os02t0778700-01
Chr02	irgsp1_rep	three_prime_UTR	32968433	32968662	.	+	.	Parent=Os02t0778700-01
Chr02	irgsp1_rep	mRNA	32974958	32975872	.	+	.	ID=Os02t0778800-00;Name=Os02t0778800-00;Locus_id=Os02g0778800;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os02t0778800-00
Chr02	irgsp1_rep	CDS	32974958	32975872	.	+	0	Parent=Os02t0778800-00
Chr02	irgsp1_rep	mRNA	32974693	32975929	.	-	.	ID=Os02t0778801-00;Name=Os02t0778801-00;Locus_id=Os02g0778801;Note=Hypothetical conserved gene.;Transcript_evidence=CT836536 (DDBJ%2C Secondary hit);ORF_evidence=NP_001066697.2 (RefSeq);TENOR=Os02t0778801-00;KEGG=Os02t0778801-00
Chr02	irgsp1_rep	five_prime_UTR	32975542	32975929	.	-	.	Parent=Os02t0778801-00
Chr02	irgsp1_rep	CDS	32975143	32975541	.	-	0	Parent=Os02t0778801-00
Chr02	irgsp1_rep	three_prime_UTR	32974693	32975142	.	-	.	Parent=Os02t0778801-00
Chr02	irgsp1_rep	mRNA	32976864	32977918	.	+	.	ID=Os02t0778900-01;Name=Os02t0778900-01;Locus_id=Os02g0778900;Note=Peptidase S8%2C subtilisin-related domain containing protein.;Transcript_evidence=AK241885 (DDBJ%2C Best hit);ORF_evidence=NP_001048299.2 (RefSeq);GO=Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500);NIAS_FLcDNA=J065219E22;TENOR=Os02t0778900-01;KEGG=Os02t0778900-01
Chr02	irgsp1_rep	five_prime_UTR	32976864	32976918	.	+	.	Parent=Os02t0778900-01
Chr02	irgsp1_rep	CDS	32976919	32977656	.	+	0	Parent=Os02t0778900-01
Chr02	irgsp1_rep	three_prime_UTR	32977657	32977918	.	+	.	Parent=Os02t0778900-01
Chr02	irgsp1_rep	mRNA	32981274	32983228	.	+	.	ID=Os02t0779000-00;Name=Os02t0779000-00;Locus_id=Os02g0779000;Oryzabase Gene Symbol Synonym(s)=OsSub21%2C SUB21;Oryzabase Gene Name Synonym(s)=Subtilisin 21%2C SUBTILISIN 21;Note=Peptidase S8/S53%2C subtilisin/kexin/sedolisin domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001048300.2 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);Oryzabase=20109;TENOR=Os02t0779000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	32981274	32981739	.	+	0	Parent=Os02t0779000-00
Chr02	irgsp1_rep	CDS	32981763	32983228	.	+	2	Parent=Os02t0779000-00
Chr02	irgsp1_rep	mRNA	32985194	32987845	.	-	.	ID=Os02t0779200-01;Name=Os02t0779200-01;Locus_id=Os02g0779200;Oryzabase Gene Symbol Synonym(s)=OsSub22%2C SUB22%2C OsSASP%2C SASP;Oryzabase Gene Name Synonym(s)=Subtilisin 22%2C SUBTILISIN 22%2C Senescence-Associated Subtilisin Protease;Note=Similar to Subtilisin-like protease (Fragment).;Transcript_evidence=AK121728 (DDBJ%2C Best hit);ORF_evidence=B3TZE7 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);NIAS_FLcDNA=J033082C22;Oryzabase=20110;Expression=AK121728;TENOR=Os02t0779200-01;KEGG=Os02t0779200-01
Chr02	irgsp1_rep	five_prime_UTR	32987777	32987845	.	-	.	Parent=Os02t0779200-01
Chr02	irgsp1_rep	CDS	32985428	32987776	.	-	0	Parent=Os02t0779200-01
Chr02	irgsp1_rep	three_prime_UTR	32985194	32985427	.	-	.	Parent=Os02t0779200-01
Chr02	irgsp1_rep	mRNA	32985102	32987749	.	-	.	ID=Os02t0779200-02;Name=Os02t0779200-02;Locus_id=Os02g0779200;Oryzabase Gene Symbol Synonym(s)=OsSub22%2C SUB22%2C OsSASP%2C SASP;Oryzabase Gene Name Synonym(s)=Subtilisin 22%2C SUBTILISIN 22%2C Senescence-Associated Subtilisin Protease;Note=Similar to Subtilisin protease (Fragment).;Transcript_evidence=AK106527 (DDBJ%2C Best hit);ORF_evidence=B3TZE7 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);NIAS_FLcDNA=002-107-F01;Oryzabase=20110;Expression=AK106527;TENOR=Os02t0779200-02;KEGG=Os02t0779200-02
Chr02	irgsp1_rep	CDS	32985428	32987749	.	-	0	Parent=Os02t0779200-02
Chr02	irgsp1_rep	three_prime_UTR	32985102	32985427	.	-	.	Parent=Os02t0779200-02
Chr02	irgsp1_rep	mRNA	32991479	32992210	.	+	.	ID=Os02t0779300-01;Name=Os02t0779300-01;Locus_id=Os02g0779300;Note=Conserved hypothetical protein.;Transcript_evidence=AK062611 (DDBJ%2C Best hit);ORF_evidence=A2XA87 (UniProt);NIAS_FLcDNA=001-105-A09;Expression=AK062611;TENOR=Os02t0779300-01;KEGG=Os02t0779300-01
Chr02	irgsp1_rep	five_prime_UTR	32991479	32991530	.	+	.	Parent=Os02t0779300-01
Chr02	irgsp1_rep	CDS	32991531	32991917	.	+	0	Parent=Os02t0779300-01
Chr02	irgsp1_rep	three_prime_UTR	32991918	32992210	.	+	.	Parent=Os02t0779300-01
Chr02	irgsp1_rep	mRNA	32993460	32993782	.	+	.	ID=Os02t0779400-00;Name=Os02t0779400-00;Locus_id=Os02g0779400;Note=Hypothetical conserved gene.;Transcript_evidence=AK375652 (DDBJ);ORF_evidence=Q6K7G3 (UniProt);TENOR=Os02t0779400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	32993460	32993470	.	+	.	Parent=Os02t0779400-00
Chr02	irgsp1_rep	CDS	32993471	32993782	.	+	0	Parent=Os02t0779400-00
Chr02	irgsp1_rep	mRNA	32994342	32996299	.	-	.	ID=Os02t0779500-01;Name=Os02t0779500-01;Locus_id=Os02g0779500;Note=Conserved hypothetical protein.;Transcript_evidence=AK063877 (DDBJ%2C Best hit);ORF_evidence=NP_001066446.1 (RefSeq);NIAS_FLcDNA=001-122-F04;TENOR=Os02t0779500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	32996186	32996299	.	-	.	Parent=Os02t0779500-01
Chr02	irgsp1_rep	five_prime_UTR	32994432	32994637	.	-	.	Parent=Os02t0779500-01
Chr02	irgsp1_rep	CDS	32994342	32994431	.	-	0	Parent=Os02t0779500-01
Chr02	irgsp1_rep	mRNA	33003012	33004615	.	-	.	ID=Os02t0779650-00;Name=Os02t0779650-00;Locus_id=Os02g0779650;Note=Hypothetical conserved gene.;Transcript_evidence=AK107154 (DDBJ%2C Secondary hit);ORF_evidence=B8AZM6 (UniProt);Expression=AK107154;TENOR=Os02t0779650-00;KEGG=Os02t0779650-00
Chr02	irgsp1_rep	CDS	33004489	33004615	.	-	0	Parent=Os02t0779650-00
Chr02	irgsp1_rep	CDS	33004209	33004363	.	-	2	Parent=Os02t0779650-00
Chr02	irgsp1_rep	three_prime_UTR	33004191	33004208	.	-	.	Parent=Os02t0779650-00
Chr02	irgsp1_rep	three_prime_UTR	33003290	33004071	.	-	.	Parent=Os02t0779650-00
Chr02	irgsp1_rep	three_prime_UTR	33003012	33003271	.	-	.	Parent=Os02t0779650-00
Chr02	irgsp1_rep	mRNA	33008525	33010291	.	+	.	ID=Os02t0779850-00;Name=Os02t0779850-00;Locus_id=Os02g0779850;Note=Hypothetical protein.;Transcript_evidence=tplb0030b01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0779850-00
Chr02	irgsp1_rep	five_prime_UTR	33008525	33008549	.	+	.	Parent=Os02t0779850-00
Chr02	irgsp1_rep	CDS	33008550	33009332	.	+	0	Parent=Os02t0779850-00
Chr02	irgsp1_rep	three_prime_UTR	33009333	33010291	.	+	.	Parent=Os02t0779850-00
Chr02	irgsp1_rep	mRNA	33008514	33010586	.	-	.	ID=Os02t0779900-00;Name=Os02t0779900-00;Locus_id=Os02g0779900;Oryzabase Gene Symbol Synonym(s)=OsSub23%2C SUB23;Oryzabase Gene Name Synonym(s)=Subtilisin 23%2C SUBTILISIN 23;Note=Peptidase S8/S53%2C subtilisin/kexin/sedolisin domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6K7F9 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Peptidase S8%2C subtilisin-related (IPR015500);Oryzabase=20111;TENOR=Os02t0779900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	33008514	33010586	.	-	0	Parent=Os02t0779900-00
Chr02	irgsp1_rep	mRNA	33034282	33034608	.	+	.	ID=Os02t0780000-00;Name=Os02t0780000-00;Locus_id=Os02g0780000;Note=Hypothetical conserved gene.;Transcript_evidence=EU954770 (DDBJ);ORF_evidence=Q6K7F6 (UniProt);TENOR=Os02t0780000-00;KEGG=Os02t0780000-00
Chr02	irgsp1_rep	CDS	33034282	33034608	.	+	0	Parent=Os02t0780000-00
Chr02	irgsp1_rep	mRNA	33045382	33048003	.	-	.	ID=Os02t0780200-01;Name=Os02t0780200-01;Locus_id=Os02g0780200;Oryzabase Gene Symbol Synonym(s)=OsSub24%2C SUB24;Oryzabase Gene Name Synonym(s)=Subtilisin 24%2C SUBTILISIN 24;Note=Peptidase S8%2C subtilisin-related domain containing protein.;Transcript_evidence=AK070669 (DDBJ%2C Best hit);ORF_evidence=A2XA93 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C  Asp-active site (IPR023827),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);NIAS_FLcDNA=J023058P11;Oryzabase=20112;Expression=AK070669;TENOR=Os02t0780200-01;KEGG=Os02t0780200-01
Chr02	irgsp1_rep	five_prime_UTR	33047984	33048003	.	-	.	Parent=Os02t0780200-01
Chr02	irgsp1_rep	CDS	33045611	33047983	.	-	0	Parent=Os02t0780200-01
Chr02	irgsp1_rep	three_prime_UTR	33045382	33045610	.	-	.	Parent=Os02t0780200-01
Chr02	irgsp1_rep	mRNA	33054175	33066629	.	+	.	ID=Os02t0780500-01;Name=Os02t0780500-01;Locus_id=Os02g0780500;Oryzabase Gene Symbol Synonym(s)=OsSTA80;Oryzabase Gene Name Synonym(s)=SRL2-like gene%2C semi-rolled leaf 2-like gene;Note=Conserved hypothetical protein.;Transcript_evidence=AK121143 (DDBJ%2C Best hit),AK072784 (DDBJ%2C Best hit);ORF_evidence=B9F3J8 (UniProt);NIAS_FLcDNA=J023077P14,J023142P06;Oryzabase=19378;TENOR=Os02t0780500-01
Chr02	irgsp1_rep	five_prime_UTR	33054175	33054279	.	+	.	Parent=Os02t0780500-01
Chr02	irgsp1_rep	five_prime_UTR	33054732	33054808	.	+	.	Parent=Os02t0780500-01
Chr02	irgsp1_rep	CDS	33054809	33054949	.	+	0	Parent=Os02t0780500-01
Chr02	irgsp1_rep	CDS	33055346	33055420	.	+	0	Parent=Os02t0780500-01
Chr02	irgsp1_rep	CDS	33055889	33056004	.	+	0	Parent=Os02t0780500-01
Chr02	irgsp1_rep	CDS	33058370	33058484	.	+	1	Parent=Os02t0780500-01
Chr02	irgsp1_rep	CDS	33058607	33058735	.	+	0	Parent=Os02t0780500-01
Chr02	irgsp1_rep	CDS	33060414	33060461	.	+	0	Parent=Os02t0780500-01
Chr02	irgsp1_rep	CDS	33060850	33061049	.	+	0	Parent=Os02t0780500-01
Chr02	irgsp1_rep	CDS	33061141	33061337	.	+	1	Parent=Os02t0780500-01
Chr02	irgsp1_rep	CDS	33061505	33061794	.	+	2	Parent=Os02t0780500-01
Chr02	irgsp1_rep	CDS	33061938	33062087	.	+	0	Parent=Os02t0780500-01
Chr02	irgsp1_rep	CDS	33062167	33062595	.	+	0	Parent=Os02t0780500-01
Chr02	irgsp1_rep	CDS	33062693	33062842	.	+	0	Parent=Os02t0780500-01
Chr02	irgsp1_rep	CDS	33063376	33063448	.	+	0	Parent=Os02t0780500-01
Chr02	irgsp1_rep	CDS	33063671	33063798	.	+	2	Parent=Os02t0780500-01
Chr02	irgsp1_rep	CDS	33064412	33064597	.	+	0	Parent=Os02t0780500-01
Chr02	irgsp1_rep	CDS	33064686	33064823	.	+	0	Parent=Os02t0780500-01
Chr02	irgsp1_rep	CDS	33064901	33065026	.	+	0	Parent=Os02t0780500-01
Chr02	irgsp1_rep	CDS	33065212	33065358	.	+	0	Parent=Os02t0780500-01
Chr02	irgsp1_rep	CDS	33065819	33065974	.	+	0	Parent=Os02t0780500-01
Chr02	irgsp1_rep	three_prime_UTR	33065975	33066629	.	+	.	Parent=Os02t0780500-01
Chr02	irgsp1_rep	mRNA	33062699	33066046	.	-	.	ID=Os02t0780536-01;Name=Os02t0780536-01;Locus_id=Os02g0780536;Note=Hypothetical gene.;Transcript_evidence=AK288231 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090012N14;TENOR=Os02t0780536-01;KEGG=Os02t0780536-01
Chr02	irgsp1_rep	five_prime_UTR	33066045	33066046	.	-	.	Parent=Os02t0780536-01
Chr02	irgsp1_rep	CDS	33065676	33066044	.	-	0	Parent=Os02t0780536-01
Chr02	irgsp1_rep	three_prime_UTR	33062699	33065675	.	-	.	Parent=Os02t0780536-01
Chr02	irgsp1_rep	mRNA	33067716	33071743	.	+	.	ID=Os02t0780550-01;Name=Os02t0780550-01;Locus_id=Os02g0780550;Note=Similar to smr domain containing protein.;Transcript_evidence=AK243308 (DDBJ%2C Best hit);ORF_evidence=NP_001147971.1 (RefSeq);InterPro=Ataxin-2%2C C-terminal (IPR009818),Domain of unknown function DUF1771 (IPR013899);NIAS_FLcDNA=J100055F12;TENOR=Os02t0780550-01;KEGG=Os02t0780550-01
Chr02	irgsp1_rep	five_prime_UTR	33067716	33067911	.	+	.	Parent=Os02t0780550-01
Chr02	irgsp1_rep	five_prime_UTR	33068802	33068814	.	+	.	Parent=Os02t0780550-01
Chr02	irgsp1_rep	CDS	33068815	33069474	.	+	0	Parent=Os02t0780550-01
Chr02	irgsp1_rep	CDS	33070172	33070565	.	+	0	Parent=Os02t0780550-01
Chr02	irgsp1_rep	CDS	33070647	33070717	.	+	2	Parent=Os02t0780550-01
Chr02	irgsp1_rep	CDS	33070880	33071004	.	+	0	Parent=Os02t0780550-01
Chr02	irgsp1_rep	CDS	33071212	33071419	.	+	1	Parent=Os02t0780550-01
Chr02	irgsp1_rep	three_prime_UTR	33071420	33071743	.	+	.	Parent=Os02t0780550-01
Chr02	irgsp1_rep	mRNA	33073135	33077126	.	+	.	ID=Os02t0780600-01;Name=Os02t0780600-01;Locus_id=Os02g0780600;Note=mRNA capping enzyme%2C large subunit domain containing protein.;Transcript_evidence=AK121526 (DDBJ%2C Best hit);ORF_evidence=B7EDQ2 (UniProt);GO=Biological Process: mRNA capping (GO:0006370);InterPro=mRNA capping enzyme%2C large subunit (IPR004971);NIAS_FLcDNA=J033030B10;Expression=AK121526;TENOR=Os02t0780600-01;KEGG=Os02t0780600-01 (EC:2.1.1.56)
Chr02	irgsp1_rep	five_prime_UTR	33073135	33073521	.	+	.	Parent=Os02t0780600-01
Chr02	irgsp1_rep	five_prime_UTR	33073924	33073932	.	+	.	Parent=Os02t0780600-01
Chr02	irgsp1_rep	CDS	33073933	33074013	.	+	0	Parent=Os02t0780600-01
Chr02	irgsp1_rep	CDS	33074138	33074216	.	+	0	Parent=Os02t0780600-01
Chr02	irgsp1_rep	CDS	33074308	33074402	.	+	2	Parent=Os02t0780600-01
Chr02	irgsp1_rep	CDS	33074501	33074569	.	+	0	Parent=Os02t0780600-01
Chr02	irgsp1_rep	CDS	33074656	33074768	.	+	0	Parent=Os02t0780600-01
Chr02	irgsp1_rep	CDS	33075635	33075745	.	+	1	Parent=Os02t0780600-01
Chr02	irgsp1_rep	CDS	33075828	33075920	.	+	1	Parent=Os02t0780600-01
Chr02	irgsp1_rep	CDS	33076006	33076074	.	+	1	Parent=Os02t0780600-01
Chr02	irgsp1_rep	CDS	33076233	33076321	.	+	1	Parent=Os02t0780600-01
Chr02	irgsp1_rep	CDS	33076394	33076491	.	+	2	Parent=Os02t0780600-01
Chr02	irgsp1_rep	CDS	33076574	33076696	.	+	0	Parent=Os02t0780600-01
Chr02	irgsp1_rep	three_prime_UTR	33076697	33077126	.	+	.	Parent=Os02t0780600-01
Chr02	irgsp1_rep	mRNA	33073178	33076881	.	+	.	ID=Os02t0780600-02;Name=Os02t0780600-02;Locus_id=Os02g0780600;Note=mRNA capping enzyme%2C large subunit domain containing protein.;Transcript_evidence=AK067608 (DDBJ%2C Best hit);ORF_evidence=B6TE79 (UniProt);GO=Biological Process: mRNA capping (GO:0006370);InterPro=mRNA capping enzyme%2C large subunit (IPR004971);NIAS_FLcDNA=J013111K12;Expression=AK067608;TENOR=Os02t0780600-02;KEGG=Os02t0780600-02 (EC:2.1.1.56)
Chr02	irgsp1_rep	five_prime_UTR	33073178	33073521	.	+	.	Parent=Os02t0780600-02
Chr02	irgsp1_rep	five_prime_UTR	33073924	33073932	.	+	.	Parent=Os02t0780600-02
Chr02	irgsp1_rep	CDS	33073933	33074013	.	+	0	Parent=Os02t0780600-02
Chr02	irgsp1_rep	CDS	33074138	33074216	.	+	0	Parent=Os02t0780600-02
Chr02	irgsp1_rep	CDS	33074308	33074402	.	+	2	Parent=Os02t0780600-02
Chr02	irgsp1_rep	CDS	33074501	33074569	.	+	0	Parent=Os02t0780600-02
Chr02	irgsp1_rep	CDS	33074656	33074768	.	+	0	Parent=Os02t0780600-02
Chr02	irgsp1_rep	CDS	33075635	33075745	.	+	1	Parent=Os02t0780600-02
Chr02	irgsp1_rep	CDS	33075828	33075920	.	+	1	Parent=Os02t0780600-02
Chr02	irgsp1_rep	CDS	33076006	33076074	.	+	1	Parent=Os02t0780600-02
Chr02	irgsp1_rep	CDS	33076233	33076321	.	+	1	Parent=Os02t0780600-02
Chr02	irgsp1_rep	CDS	33076394	33076491	.	+	2	Parent=Os02t0780600-02
Chr02	irgsp1_rep	CDS	33076574	33076696	.	+	0	Parent=Os02t0780600-02
Chr02	irgsp1_rep	three_prime_UTR	33076697	33076881	.	+	.	Parent=Os02t0780600-02
Chr02	irgsp1_rep	mRNA	33078311	33083556	.	+	.	ID=Os02t0780700-01;Name=Os02t0780700-01;Locus_id=Os02g0780700;Note=Lipase%2C class 3 family protein.;Transcript_evidence=AK063558 (DDBJ%2C Best hit);ORF_evidence=NP_566475.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: lipid catabolic process (GO:0016042),Molecular Function: carboxylesterase activity (GO:0004091),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921),Mono-/di-acylglycerol lipase%2C N-terminal (IPR005592);NIAS_FLcDNA=001-117-E12;Expression=AK063558;TENOR=Os02t0780700-01;KEGG=Os02t0780700-01
Chr02	irgsp1_rep	five_prime_UTR	33078311	33078508	.	+	.	Parent=Os02t0780700-01
Chr02	irgsp1_rep	five_prime_UTR	33078833	33079016	.	+	.	Parent=Os02t0780700-01
Chr02	irgsp1_rep	CDS	33079017	33079328	.	+	0	Parent=Os02t0780700-01
Chr02	irgsp1_rep	CDS	33080353	33080550	.	+	0	Parent=Os02t0780700-01
Chr02	irgsp1_rep	CDS	33080681	33080953	.	+	0	Parent=Os02t0780700-01
Chr02	irgsp1_rep	CDS	33081082	33081184	.	+	0	Parent=Os02t0780700-01
Chr02	irgsp1_rep	CDS	33081804	33081922	.	+	2	Parent=Os02t0780700-01
Chr02	irgsp1_rep	CDS	33082210	33082386	.	+	0	Parent=Os02t0780700-01
Chr02	irgsp1_rep	CDS	33082475	33083266	.	+	0	Parent=Os02t0780700-01
Chr02	irgsp1_rep	three_prime_UTR	33083267	33083556	.	+	.	Parent=Os02t0780700-01
Chr02	irgsp1_rep	mRNA	33084470	33093837	.	-	.	ID=Os02t0780800-01;Name=Os02t0780800-01;Locus_id=Os02g0780800;Note=Hypothetical conserved gene.;Transcript_evidence=AK242973 (DDBJ%2C Best hit);ORF_evidence=Q6K831 (UniProt);GO=Biological Process: DNA recombination (GO:0006310),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=Helicase%2C C-terminal (IPR001650),DNA helicase%2C ATP-dependent%2C RecQ type (IPR004589),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J090091I06;TENOR=Os02t0780800-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	33093709	33093837	.	-	.	Parent=Os02t0780800-01
Chr02	irgsp1_rep	five_prime_UTR	33093254	33093260	.	-	.	Parent=Os02t0780800-01
Chr02	irgsp1_rep	CDS	33093097	33093253	.	-	0	Parent=Os02t0780800-01
Chr02	irgsp1_rep	CDS	33092828	33092935	.	-	2	Parent=Os02t0780800-01
Chr02	irgsp1_rep	CDS	33092715	33092722	.	-	2	Parent=Os02t0780800-01
Chr02	irgsp1_rep	CDS	33092552	33092635	.	-	0	Parent=Os02t0780800-01
Chr02	irgsp1_rep	CDS	33092209	33092349	.	-	0	Parent=Os02t0780800-01
Chr02	irgsp1_rep	CDS	33092071	33092105	.	-	0	Parent=Os02t0780800-01
Chr02	irgsp1_rep	CDS	33091842	33091925	.	-	1	Parent=Os02t0780800-01
Chr02	irgsp1_rep	CDS	33091647	33091735	.	-	1	Parent=Os02t0780800-01
Chr02	irgsp1_rep	CDS	33091181	33091333	.	-	2	Parent=Os02t0780800-01
Chr02	irgsp1_rep	CDS	33090984	33091085	.	-	2	Parent=Os02t0780800-01
Chr02	irgsp1_rep	CDS	33090628	33090635	.	-	2	Parent=Os02t0780800-01
Chr02	irgsp1_rep	three_prime_UTR	33090486	33090627	.	-	.	Parent=Os02t0780800-01
Chr02	irgsp1_rep	three_prime_UTR	33090322	33090414	.	-	.	Parent=Os02t0780800-01
Chr02	irgsp1_rep	three_prime_UTR	33090165	33090230	.	-	.	Parent=Os02t0780800-01
Chr02	irgsp1_rep	three_prime_UTR	33089717	33089844	.	-	.	Parent=Os02t0780800-01
Chr02	irgsp1_rep	three_prime_UTR	33089286	33089377	.	-	.	Parent=Os02t0780800-01
Chr02	irgsp1_rep	three_prime_UTR	33089084	33089214	.	-	.	Parent=Os02t0780800-01
Chr02	irgsp1_rep	three_prime_UTR	33088830	33088939	.	-	.	Parent=Os02t0780800-01
Chr02	irgsp1_rep	three_prime_UTR	33084470	33085062	.	-	.	Parent=Os02t0780800-01
Chr02	irgsp1_rep	mRNA	33097336	33098768	.	+	.	ID=Os02t0781000-01;Name=Os02t0781000-01;Locus_id=Os02g0781000;Oryzabase Gene Symbol Synonym(s)=OsPGL24%2C PGL24;Oryzabase Gene Name Synonym(s)=Polygalacturonases-Like 24%2C PG-like 24;Note=Pectin lyase fold/virulence factor domain containing protein.;Transcript_evidence=AK058942 (DDBJ%2C Best hit);ORF_evidence=XP_002890322.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=001-009-H06;Oryzabase=22301;Expression=AK058942;TENOR=Os02t0781000-01;KEGG=Os02t0781000-01
Chr02	irgsp1_rep	five_prime_UTR	33097336	33097337	.	+	.	Parent=Os02t0781000-01
Chr02	irgsp1_rep	CDS	33097338	33097515	.	+	0	Parent=Os02t0781000-01
Chr02	irgsp1_rep	CDS	33097656	33097809	.	+	2	Parent=Os02t0781000-01
Chr02	irgsp1_rep	CDS	33098000	33098525	.	+	1	Parent=Os02t0781000-01
Chr02	irgsp1_rep	three_prime_UTR	33098526	33098768	.	+	.	Parent=Os02t0781000-01
Chr02	irgsp1_rep	mRNA	33107745	33108527	.	-	.	ID=Os02t0781300-00;Name=Os02t0781300-00;Locus_id=Os02g0781300;CGSNL Gene Symbol=ERF11;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 11;Oryzabase Gene Symbol Synonym(s)=OsERF#011%2C OsERF011%2C OsERF11%2C OsDERF9%2C DERF9%2C AP2/EREBP#083%2C AP2/EREBP83%2C DLN69%2C OsDLN69;Oryzabase Gene Name Synonym(s)=ethylene response factor 11%2C drought-responsive ethylene response factor 9%2C drought-responsive ERF 9%2C APETALA2/ethylene-responsive element binding protein 83%2C DLN repressor 69%2C DLN motif protein 69;Note=Similar to AP2/ERF domain-containing transcription factor.;Transcript_evidence=EU968979 (DDBJ);ORF_evidence=Q6K827 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);Oryzabase=9695;TENOR=Os02t0781300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	33108381	33108527	.	-	.	Parent=Os02t0781300-00
Chr02	irgsp1_rep	CDS	33107745	33108380	.	-	0	Parent=Os02t0781300-00
Chr02	irgsp1_rep	mRNA	33112967	33113582	.	+	.	ID=Os02t0781350-00;Name=Os02t0781350-00;Locus_id=Os02g0781350;Note=Non-protein coding transcript.;Transcript_evidence=CT835361 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os02t0781350-00
Chr02	irgsp1_rep	exon	33112967	33113582	.	+	.	Parent=Os02t0781350-00
Chr02	irgsp1_rep	mRNA	33114782	33117303	.	-	.	ID=Os02t0781400-02;Name=Os02t0781400-02;Locus_id=Os02g0781400;Note=Similar to 20 kDa chaperonin%2C chloroplast precursor (Protein Cpn21) (Chloroplast protein Cpn10) (Chloroplast chaperonin 10) (Ch-CPN10).;Transcript_evidence=AK073762 (DDBJ%2C Best hit),AK060474 (DDBJ%2C Best hit);ORF_evidence=A2XAA0 (UniProt);NIAS_FLcDNA=J033067L06,001-012-F02;Expression=AK073762;TENOR=Os02t0781400-02;KEGG=Os02t0781400-02
Chr02	irgsp1_rep	five_prime_UTR	33117203	33117303	.	-	.	Parent=Os02t0781400-02
Chr02	irgsp1_rep	CDS	33117023	33117202	.	-	0	Parent=Os02t0781400-02
Chr02	irgsp1_rep	CDS	33116192	33116371	.	-	0	Parent=Os02t0781400-02
Chr02	irgsp1_rep	CDS	33115504	33115659	.	-	0	Parent=Os02t0781400-02
Chr02	irgsp1_rep	CDS	33115287	33115364	.	-	0	Parent=Os02t0781400-02
Chr02	irgsp1_rep	CDS	33115023	33115196	.	-	0	Parent=Os02t0781400-02
Chr02	irgsp1_rep	three_prime_UTR	33114782	33115022	.	-	.	Parent=Os02t0781400-02
Chr02	irgsp1_rep	mRNA	33114835	33117303	.	-	.	ID=Os02t0781400-03;Name=Os02t0781400-03;Locus_id=Os02g0781400;Note=Similar to Chaperonin.;Transcript_evidence=AK119213 (DDBJ%2C Best hit);ORF_evidence=A2XAA0 (UniProt);GO=Biological Process: protein folding (GO:0006457),Cellular Component: cytoplasm (GO:0005737),Molecular Function: ATP binding (GO:0005524);InterPro=GroES-like (IPR011032),Chaperonin Cpn10%2C conserved site (IPR018369),Chaperonin Cpn10 (IPR020818);NIAS_FLcDNA=001-041-E07;Expression=AK119213;TENOR=Os02t0781400-03;KEGG=Os02t0781400-03
Chr02	irgsp1_rep	five_prime_UTR	33117203	33117303	.	-	.	Parent=Os02t0781400-03
Chr02	irgsp1_rep	CDS	33117023	33117202	.	-	0	Parent=Os02t0781400-03
Chr02	irgsp1_rep	CDS	33115504	33115659	.	-	0	Parent=Os02t0781400-03
Chr02	irgsp1_rep	CDS	33115287	33115364	.	-	0	Parent=Os02t0781400-03
Chr02	irgsp1_rep	CDS	33115023	33115196	.	-	0	Parent=Os02t0781400-03
Chr02	irgsp1_rep	three_prime_UTR	33114835	33115022	.	-	.	Parent=Os02t0781400-03
Chr02	irgsp1_rep	mRNA	33117861	33124042	.	+	.	ID=Os02t0781600-00;Name=Os02t0781600-00;Locus_id=Os02g0781600;Note=Hypothetical conserved gene.;Transcript_evidence=AK336106 (DDBJ);ORF_evidence=NP_179839.5 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase (IPR002591),Alkaline phosphatase-like%2C alpha/beta/alpha (IPR017849),Alkaline-phosphatase-like%2C core domain (IPR017850);TENOR=Os02t0781600-00;KEGG=Os02t0781600-00
Chr02	irgsp1_rep	five_prime_UTR	33117861	33117879	.	+	.	Parent=Os02t0781600-00
Chr02	irgsp1_rep	CDS	33117880	33118019	.	+	0	Parent=Os02t0781600-00
Chr02	irgsp1_rep	CDS	33118102	33118195	.	+	1	Parent=Os02t0781600-00
Chr02	irgsp1_rep	CDS	33118352	33118396	.	+	0	Parent=Os02t0781600-00
Chr02	irgsp1_rep	CDS	33118514	33118681	.	+	0	Parent=Os02t0781600-00
Chr02	irgsp1_rep	CDS	33118754	33118838	.	+	0	Parent=Os02t0781600-00
Chr02	irgsp1_rep	CDS	33119038	33119144	.	+	2	Parent=Os02t0781600-00
Chr02	irgsp1_rep	CDS	33119425	33119505	.	+	0	Parent=Os02t0781600-00
Chr02	irgsp1_rep	CDS	33119739	33119791	.	+	0	Parent=Os02t0781600-00
Chr02	irgsp1_rep	CDS	33119868	33119967	.	+	1	Parent=Os02t0781600-00
Chr02	irgsp1_rep	CDS	33120418	33120561	.	+	0	Parent=Os02t0781600-00
Chr02	irgsp1_rep	CDS	33120775	33120871	.	+	0	Parent=Os02t0781600-00
Chr02	irgsp1_rep	CDS	33121411	33121630	.	+	2	Parent=Os02t0781600-00
Chr02	irgsp1_rep	CDS	33121711	33121804	.	+	1	Parent=Os02t0781600-00
Chr02	irgsp1_rep	CDS	33121913	33122956	.	+	0	Parent=Os02t0781600-00
Chr02	irgsp1_rep	CDS	33123071	33123163	.	+	0	Parent=Os02t0781600-00
Chr02	irgsp1_rep	CDS	33123238	33123521	.	+	0	Parent=Os02t0781600-00
Chr02	irgsp1_rep	CDS	33123869	33123998	.	+	1	Parent=Os02t0781600-00
Chr02	irgsp1_rep	three_prime_UTR	33123999	33124042	.	+	.	Parent=Os02t0781600-00
Chr02	irgsp1_rep	mRNA	33126721	33127621	.	-	.	ID=Os02t0781700-01;Name=Os02t0781700-01;Locus_id=Os02g0781700;Note=Conserved hypothetical protein.;Transcript_evidence=AK063223 (DDBJ%2C Best hit);ORF_evidence=Q6K818 (UniProt);NIAS_FLcDNA=001-112-E08;TENOR=Os02t0781700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	33127459	33127621	.	-	.	Parent=Os02t0781700-01
Chr02	irgsp1_rep	CDS	33127090	33127458	.	-	0	Parent=Os02t0781700-01
Chr02	irgsp1_rep	three_prime_UTR	33126721	33127089	.	-	.	Parent=Os02t0781700-01
Chr02	irgsp1_rep	mRNA	33124498	33127599	.	-	.	ID=Os02t0781700-02;Name=Os02t0781700-02;Locus_id=Os02g0781700;Note=Conserved hypothetical protein.;Transcript_evidence=AK061791 (DDBJ%2C Best hit);ORF_evidence=Q84P89 (UniProt);NIAS_FLcDNA=001-039-F04;TENOR=Os02t0781700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	33127150	33127599	.	-	0	Parent=Os02t0781700-02
Chr02	irgsp1_rep	CDS	33126283	33126373	.	-	0	Parent=Os02t0781700-02
Chr02	irgsp1_rep	CDS	33125960	33126138	.	-	2	Parent=Os02t0781700-02
Chr02	irgsp1_rep	CDS	33125643	33125670	.	-	0	Parent=Os02t0781700-02
Chr02	irgsp1_rep	CDS	33125453	33125561	.	-	2	Parent=Os02t0781700-02
Chr02	irgsp1_rep	CDS	33124890	33124971	.	-	1	Parent=Os02t0781700-02
Chr02	irgsp1_rep	three_prime_UTR	33124498	33124889	.	-	.	Parent=Os02t0781700-02
Chr02	irgsp1_rep	mRNA	33129588	33134074	.	-	.	ID=Os02t0781800-01;Name=Os02t0781800-01;Locus_id=Os02g0781800;Note=Conserved hypothetical protein.;Transcript_evidence=AK099467 (DDBJ%2C Best hit);ORF_evidence=B8AJJ1 (UniProt);NIAS_FLcDNA=J013023L19;TENOR=Os02t0781800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	33134006	33134074	.	-	.	Parent=Os02t0781800-01
Chr02	irgsp1_rep	five_prime_UTR	33132496	33133729	.	-	.	Parent=Os02t0781800-01
Chr02	irgsp1_rep	CDS	33132283	33132495	.	-	0	Parent=Os02t0781800-01
Chr02	irgsp1_rep	three_prime_UTR	33130902	33132282	.	-	.	Parent=Os02t0781800-01
Chr02	irgsp1_rep	three_prime_UTR	33130751	33130831	.	-	.	Parent=Os02t0781800-01
Chr02	irgsp1_rep	three_prime_UTR	33130109	33130658	.	-	.	Parent=Os02t0781800-01
Chr02	irgsp1_rep	three_prime_UTR	33129588	33130031	.	-	.	Parent=Os02t0781800-01
Chr02	irgsp1_rep	mRNA	33129624	33130901	.	-	.	ID=Os02t0781800-02;Name=Os02t0781800-02;Locus_id=Os02g0781800;Note=Quinonprotein alcohol dehydrogenase-like domain containing protein.;Transcript_evidence=AK099605 (DDBJ%2C Best hit);ORF_evidence=B9F3K6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Quinonprotein alcohol dehydrogenase-like (IPR011047),WD40/YVTN repeat-like-containing domain (IPR015943);NIAS_FLcDNA=J013048C02;TENOR=Os02t0781800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	33130712	33130901	.	-	.	Parent=Os02t0781800-02
Chr02	irgsp1_rep	CDS	33130466	33130711	.	-	0	Parent=Os02t0781800-02
Chr02	irgsp1_rep	CDS	33130109	33130388	.	-	0	Parent=Os02t0781800-02
Chr02	irgsp1_rep	CDS	33129790	33130031	.	-	2	Parent=Os02t0781800-02
Chr02	irgsp1_rep	three_prime_UTR	33129624	33129789	.	-	.	Parent=Os02t0781800-02
Chr02	irgsp1_rep	mRNA	33129794	33131647	.	+	.	ID=Os02t0781850-00;Name=Os02t0781850-00;Locus_id=Os02g0781850;Note=Hypothetical protein.;Transcript_evidence=tplb0051f06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0781850-00
Chr02	irgsp1_rep	five_prime_UTR	33129794	33129871	.	+	.	Parent=Os02t0781850-00
Chr02	irgsp1_rep	CDS	33129872	33130021	.	+	0	Parent=Os02t0781850-00
Chr02	irgsp1_rep	CDS	33130123	33130233	.	+	0	Parent=Os02t0781850-00
Chr02	irgsp1_rep	three_prime_UTR	33130234	33130379	.	+	.	Parent=Os02t0781850-00
Chr02	irgsp1_rep	three_prime_UTR	33130458	33130681	.	+	.	Parent=Os02t0781850-00
Chr02	irgsp1_rep	three_prime_UTR	33130843	33131037	.	+	.	Parent=Os02t0781850-00
Chr02	irgsp1_rep	three_prime_UTR	33131275	33131407	.	+	.	Parent=Os02t0781850-00
Chr02	irgsp1_rep	three_prime_UTR	33131491	33131647	.	+	.	Parent=Os02t0781850-00
Chr02	irgsp1_rep	mRNA	33137650	33141831	.	+	.	ID=Os02t0781900-00;Name=Os02t0781900-00;Locus_id=Os02g0781900;Oryzabase Gene Symbol Synonym(s)=OsSTA81;Note=Conserved hypothetical protein.;Transcript_evidence=AK367274 (DDBJ);ORF_evidence=NP_001173172.1 (RefSeq);Oryzabase=19379;TENOR=Os02t0781900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	33137650	33138448	.	+	0	Parent=Os02t0781900-00
Chr02	irgsp1_rep	CDS	33140021	33140790	.	+	2	Parent=Os02t0781900-00
Chr02	irgsp1_rep	CDS	33140860	33141409	.	+	0	Parent=Os02t0781900-00
Chr02	irgsp1_rep	CDS	33141542	33141625	.	+	2	Parent=Os02t0781900-00
Chr02	irgsp1_rep	CDS	33141723	33141772	.	+	2	Parent=Os02t0781900-00
Chr02	irgsp1_rep	three_prime_UTR	33141773	33141831	.	+	.	Parent=Os02t0781900-00
Chr02	irgsp1_rep	mRNA	33140029	33141318	.	-	.	ID=Os02t0781966-00;Name=Os02t0781966-00;Locus_id=Os02g0781966;Note=Hypothetical protein.;Transcript_evidence=EU948855 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0781966-00
Chr02	irgsp1_rep	CDS	33140992	33141318	.	-	0	Parent=Os02t0781966-00
Chr02	irgsp1_rep	three_prime_UTR	33140029	33140991	.	-	.	Parent=Os02t0781966-00
Chr02	irgsp1_rep	mRNA	33147301	33154105	.	+	.	ID=Os02t0782100-01;Name=Os02t0782100-01;Locus_id=Os02g0782100;Note=Uncharacterised domain NUC173 domain containing protein.;Transcript_evidence=AK065421 (DDBJ%2C Best hit);ORF_evidence=B9F3K8 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Uncharacterised domain NUC173 (IPR012978),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013011O20;TENOR=Os02t0782100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	33147301	33147301	.	+	.	Parent=Os02t0782100-01
Chr02	irgsp1_rep	CDS	33147302	33147442	.	+	0	Parent=Os02t0782100-01
Chr02	irgsp1_rep	CDS	33147859	33148390	.	+	0	Parent=Os02t0782100-01
Chr02	irgsp1_rep	CDS	33148495	33148749	.	+	2	Parent=Os02t0782100-01
Chr02	irgsp1_rep	CDS	33149022	33149113	.	+	2	Parent=Os02t0782100-01
Chr02	irgsp1_rep	CDS	33149252	33149449	.	+	0	Parent=Os02t0782100-01
Chr02	irgsp1_rep	CDS	33149556	33149747	.	+	0	Parent=Os02t0782100-01
Chr02	irgsp1_rep	CDS	33149848	33150069	.	+	0	Parent=Os02t0782100-01
Chr02	irgsp1_rep	CDS	33150365	33150531	.	+	0	Parent=Os02t0782100-01
Chr02	irgsp1_rep	CDS	33150624	33150717	.	+	1	Parent=Os02t0782100-01
Chr02	irgsp1_rep	CDS	33150815	33150871	.	+	0	Parent=Os02t0782100-01
Chr02	irgsp1_rep	CDS	33150966	33151094	.	+	0	Parent=Os02t0782100-01
Chr02	irgsp1_rep	CDS	33151188	33151259	.	+	0	Parent=Os02t0782100-01
Chr02	irgsp1_rep	CDS	33151687	33151800	.	+	0	Parent=Os02t0782100-01
Chr02	irgsp1_rep	CDS	33151926	33152087	.	+	0	Parent=Os02t0782100-01
Chr02	irgsp1_rep	CDS	33152173	33152301	.	+	0	Parent=Os02t0782100-01
Chr02	irgsp1_rep	CDS	33152564	33152665	.	+	0	Parent=Os02t0782100-01
Chr02	irgsp1_rep	CDS	33152773	33152849	.	+	0	Parent=Os02t0782100-01
Chr02	irgsp1_rep	CDS	33152977	33153099	.	+	1	Parent=Os02t0782100-01
Chr02	irgsp1_rep	CDS	33153173	33153734	.	+	1	Parent=Os02t0782100-01
Chr02	irgsp1_rep	three_prime_UTR	33153735	33154105	.	+	.	Parent=Os02t0782100-01
Chr02	irgsp1_rep	mRNA	33162624	33168993	.	-	.	ID=Os02t0782200-01;Name=Os02t0782200-01;Locus_id=Os02g0782200;Note=Similar to NOT2/NOT3/NOT5 family protein%2C expressed.;Transcript_evidence=AK070439 (DDBJ%2C Best hit);ORF_evidence=Q10D98 (UniProt);NIAS_FLcDNA=J023054G23;TENOR=Os02t0782200-01
Chr02	irgsp1_rep	five_prime_UTR	33168790	33168993	.	-	.	Parent=Os02t0782200-01
Chr02	irgsp1_rep	five_prime_UTR	33167993	33168048	.	-	.	Parent=Os02t0782200-01
Chr02	irgsp1_rep	CDS	33167975	33167992	.	-	0	Parent=Os02t0782200-01
Chr02	irgsp1_rep	CDS	33167216	33167324	.	-	0	Parent=Os02t0782200-01
Chr02	irgsp1_rep	CDS	33166970	33167133	.	-	2	Parent=Os02t0782200-01
Chr02	irgsp1_rep	CDS	33166483	33166843	.	-	0	Parent=Os02t0782200-01
Chr02	irgsp1_rep	CDS	33165261	33165467	.	-	2	Parent=Os02t0782200-01
Chr02	irgsp1_rep	CDS	33165095	33165196	.	-	2	Parent=Os02t0782200-01
Chr02	irgsp1_rep	CDS	33163292	33163377	.	-	2	Parent=Os02t0782200-01
Chr02	irgsp1_rep	CDS	33163137	33163214	.	-	0	Parent=Os02t0782200-01
Chr02	irgsp1_rep	CDS	33162624	33162997	.	-	0	Parent=Os02t0782200-01
Chr02	irgsp1_rep	mRNA	33159664	33168957	.	-	.	ID=Os02t0782200-02;Name=Os02t0782200-02;Locus_id=Os02g0782200;Note=NOT2/NOT3/NOT5 domain containing protein.;Transcript_evidence=AK101869 (DDBJ%2C Best hit);ORF_evidence=Q10D98 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634);InterPro=NOT2/NOT3/NOT5 (IPR007282);NIAS_FLcDNA=J033070E05;Expression=AK101869;TENOR=Os02t0782200-02;KEGG=Os02t0782200-02
Chr02	irgsp1_rep	five_prime_UTR	33168790	33168957	.	-	.	Parent=Os02t0782200-02
Chr02	irgsp1_rep	five_prime_UTR	33167993	33168048	.	-	.	Parent=Os02t0782200-02
Chr02	irgsp1_rep	CDS	33167975	33167992	.	-	0	Parent=Os02t0782200-02
Chr02	irgsp1_rep	CDS	33167216	33167324	.	-	0	Parent=Os02t0782200-02
Chr02	irgsp1_rep	CDS	33166970	33167133	.	-	2	Parent=Os02t0782200-02
Chr02	irgsp1_rep	CDS	33166483	33166843	.	-	0	Parent=Os02t0782200-02
Chr02	irgsp1_rep	CDS	33165261	33165467	.	-	2	Parent=Os02t0782200-02
Chr02	irgsp1_rep	CDS	33165095	33165196	.	-	2	Parent=Os02t0782200-02
Chr02	irgsp1_rep	CDS	33163292	33163377	.	-	2	Parent=Os02t0782200-02
Chr02	irgsp1_rep	CDS	33163137	33163214	.	-	0	Parent=Os02t0782200-02
Chr02	irgsp1_rep	CDS	33162566	33162997	.	-	0	Parent=Os02t0782200-02
Chr02	irgsp1_rep	CDS	33162321	33162373	.	-	0	Parent=Os02t0782200-02
Chr02	irgsp1_rep	CDS	33162157	33162198	.	-	1	Parent=Os02t0782200-02
Chr02	irgsp1_rep	CDS	33160804	33160948	.	-	1	Parent=Os02t0782200-02
Chr02	irgsp1_rep	CDS	33160646	33160717	.	-	0	Parent=Os02t0782200-02
Chr02	irgsp1_rep	three_prime_UTR	33160636	33160645	.	-	.	Parent=Os02t0782200-02
Chr02	irgsp1_rep	three_prime_UTR	33160453	33160543	.	-	.	Parent=Os02t0782200-02
Chr02	irgsp1_rep	three_prime_UTR	33159664	33160033	.	-	.	Parent=Os02t0782200-02
Chr02	irgsp1_rep	mRNA	33159684	33166817	.	-	.	ID=Os02t0782200-03;Name=Os02t0782200-03;Locus_id=Os02g0782200;Note=Similar to NOT2/NOT3/NOT5 family protein%2C expressed.;Transcript_evidence=AK060779 (DDBJ%2C Best hit);ORF_evidence=Q10D98 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634);InterPro=NOT2/NOT3/NOT5 (IPR007282);NIAS_FLcDNA=001-033-C04;Expression=AK060779;TENOR=Os02t0782200-03;KEGG=Os02t0782200-03
Chr02	irgsp1_rep	five_prime_UTR	33166817	33166817	.	-	.	Parent=Os02t0782200-03
Chr02	irgsp1_rep	CDS	33166483	33166816	.	-	0	Parent=Os02t0782200-03
Chr02	irgsp1_rep	CDS	33165261	33165467	.	-	2	Parent=Os02t0782200-03
Chr02	irgsp1_rep	CDS	33165095	33165196	.	-	2	Parent=Os02t0782200-03
Chr02	irgsp1_rep	CDS	33163292	33163377	.	-	2	Parent=Os02t0782200-03
Chr02	irgsp1_rep	CDS	33163137	33163214	.	-	0	Parent=Os02t0782200-03
Chr02	irgsp1_rep	CDS	33162566	33162997	.	-	0	Parent=Os02t0782200-03
Chr02	irgsp1_rep	CDS	33162321	33162373	.	-	0	Parent=Os02t0782200-03
Chr02	irgsp1_rep	CDS	33162157	33162198	.	-	1	Parent=Os02t0782200-03
Chr02	irgsp1_rep	CDS	33160804	33160948	.	-	1	Parent=Os02t0782200-03
Chr02	irgsp1_rep	CDS	33160646	33160717	.	-	0	Parent=Os02t0782200-03
Chr02	irgsp1_rep	three_prime_UTR	33160636	33160645	.	-	.	Parent=Os02t0782200-03
Chr02	irgsp1_rep	three_prime_UTR	33160453	33160543	.	-	.	Parent=Os02t0782200-03
Chr02	irgsp1_rep	three_prime_UTR	33159684	33160028	.	-	.	Parent=Os02t0782200-03
Chr02	irgsp1_rep	mRNA	33170108	33175595	.	-	.	ID=Os02t0782300-01;Name=Os02t0782300-01;Locus_id=Os02g0782300;Oryzabase Gene Symbol Synonym(s)=OsDjC23;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C23;Note=Similar to Heat shock-like protein.;Transcript_evidence=AK067047 (DDBJ%2C Best hit);ORF_evidence=A6N118 (UniProt);NIAS_FLcDNA=J013092E02;Oryzabase=12180;Expression=AK067047;TENOR=Os02t0782300-01;KEGG=Os02t0782300-01
Chr02	irgsp1_rep	five_prime_UTR	33175260	33175595	.	-	.	Parent=Os02t0782300-01
Chr02	irgsp1_rep	five_prime_UTR	33173144	33173480	.	-	.	Parent=Os02t0782300-01
Chr02	irgsp1_rep	five_prime_UTR	33173061	33173069	.	-	.	Parent=Os02t0782300-01
Chr02	irgsp1_rep	CDS	33173007	33173060	.	-	0	Parent=Os02t0782300-01
Chr02	irgsp1_rep	CDS	33171913	33172212	.	-	0	Parent=Os02t0782300-01
Chr02	irgsp1_rep	CDS	33170323	33170472	.	-	0	Parent=Os02t0782300-01
Chr02	irgsp1_rep	three_prime_UTR	33170108	33170322	.	-	.	Parent=Os02t0782300-01
Chr02	irgsp1_rep	mRNA	33174881	33175427	.	-	.	ID=Os02t0782300-02;Name=Os02t0782300-02;Locus_id=Os02g0782300;Oryzabase Gene Symbol Synonym(s)=OsDjC23;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C23;Note=Conserved hypothetical protein.;Transcript_evidence=AK109297 (DDBJ%2C Best hit);ORF_evidence=Q5SNM9 (UniProt);NIAS_FLcDNA=002-188-D06;Oryzabase=12180;TENOR=Os02t0782300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	33175067	33175427	.	-	.	Parent=Os02t0782300-02
Chr02	irgsp1_rep	CDS	33174899	33175066	.	-	0	Parent=Os02t0782300-02
Chr02	irgsp1_rep	three_prime_UTR	33174881	33174898	.	-	.	Parent=Os02t0782300-02
Chr02	irgsp1_rep	mRNA	33170168	33170560	.	+	.	ID=Os02t0782366-00;Name=Os02t0782366-00;Locus_id=Os02g0782366;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os02t0782366-00;KEGG=Os02t0782366-00
Chr02	irgsp1_rep	CDS	33170168	33170560	.	+	0	Parent=Os02t0782366-00
Chr02	irgsp1_rep	mRNA	33179489	33180405	.	+	.	ID=Os02t0782500-01;Name=Os02t0782500-01;Locus_id=Os02g0782500;CGSNL Gene Symbol=HSP18.0-CIII;CGSNL Gene Name=18.0-KD CLASS III HEAT SHOCK PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsHSP18.0-CIII;Oryzabase Gene Name Synonym(s)=18.0 kDa class III heat shock protein%2C 18.0-kD class III heat shock protein;Note=Similar to Small heat stress protein class CIII.;Transcript_evidence=AK119261 (DDBJ%2C Best hit);ORF_evidence=Q6K7E9 (UniProt);InterPro=Heat shock protein Hsp20 (IPR002068),HSP20-like chaperone (IPR008978);NIAS_FLcDNA=001-125-H08;Oryzabase=10407;Expression=AK119261;TENOR=Os02t0782500-01;KEGG=Os02t0782500-01
Chr02	irgsp1_rep	five_prime_UTR	33179489	33179541	.	+	.	Parent=Os02t0782500-01
Chr02	irgsp1_rep	CDS	33179542	33179784	.	+	0	Parent=Os02t0782500-01
Chr02	irgsp1_rep	CDS	33179873	33180148	.	+	0	Parent=Os02t0782500-01
Chr02	irgsp1_rep	three_prime_UTR	33180149	33180405	.	+	.	Parent=Os02t0782500-01
Chr02	irgsp1_rep	mRNA	33179492	33180392	.	+	.	ID=Os02t0782500-02;Name=Os02t0782500-02;Locus_id=Os02g0782500;CGSNL Gene Symbol=HSP18.0-CIII;CGSNL Gene Name=18.0-KD CLASS III HEAT SHOCK PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsHSP18.0-CIII;Oryzabase Gene Name Synonym(s)=18.0 kDa class III heat shock protein%2C 18.0-kD class III heat shock protein;Note=Similar to 17.5 kDa class II heat shock protein.;Transcript_evidence=AK063602 (DDBJ%2C Best hit);ORF_evidence=Q6K7E9 (UniProt);NIAS_FLcDNA=001-118-C03;Oryzabase=10407;Expression=AK063602;TENOR=Os02t0782500-02;KEGG=Os02t0782500-02
Chr02	irgsp1_rep	five_prime_UTR	33179492	33179541	.	+	.	Parent=Os02t0782500-02
Chr02	irgsp1_rep	CDS	33179542	33179808	.	+	0	Parent=Os02t0782500-02
Chr02	irgsp1_rep	three_prime_UTR	33179809	33180092	.	+	.	Parent=Os02t0782500-02
Chr02	irgsp1_rep	three_prime_UTR	33180190	33180392	.	+	.	Parent=Os02t0782500-02
Chr02	irgsp1_rep	mRNA	33179607	33180241	.	-	.	ID=Os02t0782550-00;Name=Os02t0782550-00;Locus_id=Os02g0782550;Note=Hypothetical protein.;Transcript_evidence=BT016978 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0782550-00
Chr02	irgsp1_rep	five_prime_UTR	33180154	33180241	.	-	.	Parent=Os02t0782550-00
Chr02	irgsp1_rep	CDS	33179878	33180153	.	-	0	Parent=Os02t0782550-00
Chr02	irgsp1_rep	CDS	33179607	33179765	.	-	0	Parent=Os02t0782550-00
Chr02	irgsp1_rep	mRNA	33194536	33198493	.	+	.	ID=Os02t0782600-01;Name=Os02t0782600-01;Locus_id=Os02g0782600;Note=Synaptojanin%2C N-terminal domain containing protein.;Transcript_evidence=AK065621 (DDBJ%2C Best hit);ORF_evidence=B8AJJ9 (UniProt);GO=Molecular Function: phosphoric ester hydrolase activity (GO:0042578);InterPro=Synaptojanin%2C N-terminal (IPR002013);NIAS_FLcDNA=J013031I20;TENOR=Os02t0782600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	33194536	33194928	.	+	0	Parent=Os02t0782600-01
Chr02	irgsp1_rep	CDS	33195491	33195612	.	+	0	Parent=Os02t0782600-01
Chr02	irgsp1_rep	CDS	33195731	33195820	.	+	1	Parent=Os02t0782600-01
Chr02	irgsp1_rep	CDS	33196599	33196811	.	+	1	Parent=Os02t0782600-01
Chr02	irgsp1_rep	CDS	33196960	33197091	.	+	1	Parent=Os02t0782600-01
Chr02	irgsp1_rep	CDS	33197765	33197840	.	+	1	Parent=Os02t0782600-01
Chr02	irgsp1_rep	CDS	33198029	33198115	.	+	0	Parent=Os02t0782600-01
Chr02	irgsp1_rep	three_prime_UTR	33198116	33198493	.	+	.	Parent=Os02t0782600-01
Chr02	irgsp1_rep	mRNA	33194855	33198569	.	+	.	ID=Os02t0782600-02;Name=Os02t0782600-02;Locus_id=Os02g0782600;Note=Similar to SAC domain protein 1 (FIG4-like protein AtFIG4).;Transcript_evidence=AK059701 (DDBJ%2C Best hit);ORF_evidence=A6N1B2 (UniProt);NIAS_FLcDNA=001-032-C12;Expression=AK059701;TENOR=Os02t0782600-02;KEGG=Os02t0782600-02
Chr02	irgsp1_rep	five_prime_UTR	33194855	33194859	.	+	.	Parent=Os02t0782600-02
Chr02	irgsp1_rep	CDS	33194860	33194928	.	+	0	Parent=Os02t0782600-02
Chr02	irgsp1_rep	CDS	33195491	33195612	.	+	0	Parent=Os02t0782600-02
Chr02	irgsp1_rep	CDS	33195731	33195820	.	+	1	Parent=Os02t0782600-02
Chr02	irgsp1_rep	CDS	33196599	33196811	.	+	1	Parent=Os02t0782600-02
Chr02	irgsp1_rep	CDS	33196960	33197091	.	+	1	Parent=Os02t0782600-02
Chr02	irgsp1_rep	CDS	33197765	33197840	.	+	1	Parent=Os02t0782600-02
Chr02	irgsp1_rep	CDS	33198029	33198115	.	+	0	Parent=Os02t0782600-02
Chr02	irgsp1_rep	three_prime_UTR	33198116	33198569	.	+	.	Parent=Os02t0782600-02
Chr02	irgsp1_rep	mRNA	33199818	33202681	.	-	.	ID=Os02t0782700-01;Name=Os02t0782700-01;Locus_id=Os02g0782700;RAP-DB Gene Symbol Synonym(s)=EREBP1%2C OsEREBP1%2C OsERF#070%2C OsERF070%2C OsERF70%2C ERF70%2C AP2/EREBP#084%2C AP2/EREBP84;RAP-DB Gene Name Synonym(s)=ETHYLENE-RESPONSIVE ELEMENT-BINDING PROTEIN 1%2C ethylene-responsive element-binding protein 1%2C Ethylene-responsive transcription factor 1%2C Ethylene-responsive element-binding factor 1%2C ethylene response factor 70%2C APETALA2/ethylene-responsive element binding protein 84;CGSNL Gene Symbol=EREBP1;CGSNL Gene Name=ETHYLENE-RESPONSIVE ELEMENT-BINDING PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsEREBP1%2C OsERF#070%2C OsERF070%2C OsERF70%2C ERF70%2C AP2/EREBP#084%2C AP2/EREBP84;Oryzabase Gene Name Synonym(s)=ethylene-responsive element-binding protein 1%2C ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN1%2C Ethylene-responsive transcription factor 1%2C Ethylene-responsive element-binding factor 1%2C ethylene response factor 70%2C APETALA2/ethylene-responsive element binding protein 84;Note=AP2/ERF transcription factor%2C Defense response%2C Abiotic stress response;Transcript_evidence=AF193803,AK103783,AK119643;ORF_evidence=Q6K7E6;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700);InterPro=DNA-binding domain (IPR016177),AP2/ERF domain (IPR001471);NIAS_FLcDNA=J033145H23, 002-130-F11;Manual Curation=September 30%2C 2015;Literature_PMID=12913152,23703395;Oryzabase=6137;Expression=AK103783;TENOR=Os02t0782700-01;KEGG=Os02t0782700-01
Chr02	irgsp1_rep	five_prime_UTR	33202520	33202681	.	-	.	Parent=Os02t0782700-01
Chr02	irgsp1_rep	CDS	33202240	33202519	.	-	0	Parent=Os02t0782700-01
Chr02	irgsp1_rep	CDS	33200324	33201141	.	-	2	Parent=Os02t0782700-01
Chr02	irgsp1_rep	three_prime_UTR	33200277	33200323	.	-	.	Parent=Os02t0782700-01
Chr02	irgsp1_rep	three_prime_UTR	33199818	33200196	.	-	.	Parent=Os02t0782700-01
Chr02	irgsp1_rep	mRNA	33199926	33202587	.	-	.	ID=Os02t0782700-02;Name=Os02t0782700-02;Locus_id=Os02g0782700;CGSNL Gene Symbol=EREBP1;CGSNL Gene Name=ETHYLENE-RESPONSIVE ELEMENT-BINDING PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsEREBP1%2C OsERF#070%2C OsERF070%2C OsERF70%2C ERF70%2C AP2/EREBP#084%2C AP2/EREBP84;Oryzabase Gene Name Synonym(s)=ethylene-responsive element-binding protein 1%2C ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN1%2C Ethylene-responsive transcription factor 1%2C Ethylene-responsive element-binding factor 1%2C ethylene response factor 70%2C APETALA2/ethylene-responsive element binding protein 84;Note=Similar to Transcription factor EREBP1.;Transcript_evidence=AK119885 (DDBJ%2C Best hit),AK064027 (DDBJ%2C Best hit);ORF_evidence=Q6K7E6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=002-179-H02,001-125-B02;Oryzabase=6137;TENOR=Os02t0782700-02;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	33202520	33202587	.	-	.	Parent=Os02t0782700-02
Chr02	irgsp1_rep	CDS	33202240	33202519	.	-	0	Parent=Os02t0782700-02
Chr02	irgsp1_rep	CDS	33200324	33201141	.	-	2	Parent=Os02t0782700-02
Chr02	irgsp1_rep	three_prime_UTR	33200277	33200323	.	-	.	Parent=Os02t0782700-02
Chr02	irgsp1_rep	three_prime_UTR	33199926	33200196	.	-	.	Parent=Os02t0782700-02
Chr02	irgsp1_rep	mRNA	33208938	33219652	.	+	.	ID=Os02t0782800-01;Name=Os02t0782800-01;Locus_id=Os02g0782800;RAP-DB Gene Symbol Synonym(s)=DES4;RAP-DB Gene Name Synonym(s)=Decreased Spikelets 4;CGSNL Gene Symbol=DES4;CGSNL Gene Name=DECREASED SPIKELETS 4;Oryzabase Gene Symbol Synonym(s)=OsDES4;Oryzabase Gene Name Synonym(s)=Decreased Spikelets 4;Note=Tetratricopeptide repeat domain-containing protein%2C Close ortholog of Arabidopsis BRU1%2C DNA repair%2C Determination of spikelet number;Transcript_evidence=AK064434 (truncated),Inferred from literature;ORF_evidence=B9F3L2;GO=Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical domain superfamily (IPR011990),Tetratricopeptide repeat-containing domain (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=002-110-D06 (truncated);Manual Curation=October 23%2C 2019;Literature_PMID=30871267;Oryzabase=23141;TENOR=Os02t0782800-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=nucleus (GO:0005634)
Chr02	irgsp1_rep	CDS	33208938	33209237	.	+	0	Parent=Os02t0782800-01
Chr02	irgsp1_rep	CDS	33210390	33211187	.	+	0	Parent=Os02t0782800-01
Chr02	irgsp1_rep	CDS	33212336	33212512	.	+	0	Parent=Os02t0782800-01
Chr02	irgsp1_rep	CDS	33212666	33212757	.	+	0	Parent=Os02t0782800-01
Chr02	irgsp1_rep	CDS	33212929	33213027	.	+	1	Parent=Os02t0782800-01
Chr02	irgsp1_rep	CDS	33213105	33213547	.	+	1	Parent=Os02t0782800-01
Chr02	irgsp1_rep	CDS	33213654	33213691	.	+	2	Parent=Os02t0782800-01
Chr02	irgsp1_rep	CDS	33213850	33214107	.	+	0	Parent=Os02t0782800-01
Chr02	irgsp1_rep	CDS	33214885	33215032	.	+	0	Parent=Os02t0782800-01
Chr02	irgsp1_rep	CDS	33215496	33215615	.	+	2	Parent=Os02t0782800-01
Chr02	irgsp1_rep	CDS	33216391	33216491	.	+	2	Parent=Os02t0782800-01
Chr02	irgsp1_rep	CDS	33216597	33216720	.	+	0	Parent=Os02t0782800-01
Chr02	irgsp1_rep	CDS	33216893	33217005	.	+	2	Parent=Os02t0782800-01
Chr02	irgsp1_rep	CDS	33217610	33217721	.	+	0	Parent=Os02t0782800-01
Chr02	irgsp1_rep	CDS	33217835	33217939	.	+	2	Parent=Os02t0782800-01
Chr02	irgsp1_rep	CDS	33218034	33218100	.	+	2	Parent=Os02t0782800-01
Chr02	irgsp1_rep	CDS	33218192	33218312	.	+	1	Parent=Os02t0782800-01
Chr02	irgsp1_rep	CDS	33218471	33218641	.	+	0	Parent=Os02t0782800-01
Chr02	irgsp1_rep	CDS	33218728	33218845	.	+	0	Parent=Os02t0782800-01
Chr02	irgsp1_rep	CDS	33218925	33219436	.	+	2	Parent=Os02t0782800-01
Chr02	irgsp1_rep	three_prime_UTR	33219437	33219652	.	+	.	Parent=Os02t0782800-01
Chr02	irgsp1_rep	mRNA	33220361	33221120	.	+	.	ID=Os02t0782900-01;Name=Os02t0782900-01;Locus_id=Os02g0782900;Note=Conserved hypothetical protein.;Transcript_evidence=AK062387 (DDBJ%2C Best hit);ORF_evidence=Q6K7E4 (UniProt);NIAS_FLcDNA=001-102-C04;Expression=AK062387;TENOR=Os02t0782900-01;KEGG=Os02t0782900-01
Chr02	irgsp1_rep	CDS	33220361	33220528	.	+	0	Parent=Os02t0782900-01
Chr02	irgsp1_rep	CDS	33220619	33220743	.	+	0	Parent=Os02t0782900-01
Chr02	irgsp1_rep	CDS	33220854	33220959	.	+	1	Parent=Os02t0782900-01
Chr02	irgsp1_rep	three_prime_UTR	33220960	33221120	.	+	.	Parent=Os02t0782900-01
Chr02	irgsp1_rep	mRNA	33221378	33223595	.	-	.	ID=Os02t0783000-01;Name=Os02t0783000-01;Locus_id=Os02g0783000;CGSNL Gene Symbol=PME9;CGSNL Gene Name=PECTIN METHYLESTERASE 9;Oryzabase Gene Symbol Synonym(s)=OsPME9;Oryzabase Gene Name Synonym(s)=pectin methylesterase 9;Note=Similar to Pectin methylesterase 5 (Fragment).;Transcript_evidence=AK105110 (DDBJ%2C Best hit);ORF_evidence=NP_001148248.1 (RefSeq);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectinesterase inhibitor (IPR006501),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),Pectinesterase%2C active site (IPR018040);NIAS_FLcDNA=001-100-F08;Oryzabase=13173;Expression=AK105110;TENOR=Os02t0783000-01;KEGG=Os02t0783000-01
Chr02	irgsp1_rep	five_prime_UTR	33223583	33223595	.	-	.	Parent=Os02t0783000-01
Chr02	irgsp1_rep	CDS	33222517	33223582	.	-	0	Parent=Os02t0783000-01
Chr02	irgsp1_rep	CDS	33221394	33222073	.	-	2	Parent=Os02t0783000-01
Chr02	irgsp1_rep	three_prime_UTR	33221378	33221393	.	-	.	Parent=Os02t0783000-01
Chr02	irgsp1_rep	mRNA	33221713	33223163	.	+	.	ID=Os02t0783050-00;Name=Os02t0783050-00;Locus_id=Os02g0783050;Note=Hypothetical gene.;Transcript_evidence=BT085732 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0783050-00;KEGG=Os02t0783050-00
Chr02	irgsp1_rep	five_prime_UTR	33221713	33221735	.	+	.	Parent=Os02t0783050-00
Chr02	irgsp1_rep	CDS	33221736	33222065	.	+	0	Parent=Os02t0783050-00
Chr02	irgsp1_rep	CDS	33222509	33222835	.	+	0	Parent=Os02t0783050-00
Chr02	irgsp1_rep	three_prime_UTR	33222836	33223163	.	+	.	Parent=Os02t0783050-00
Chr02	irgsp1_rep	mRNA	33224109	33227677	.	-	.	ID=Os02t0783100-01;Name=Os02t0783100-01;Locus_id=Os02g0783100;Note=Mitochodrial transcription termination factor-related family protein.;Transcript_evidence=AK064154 (DDBJ%2C Best hit);ORF_evidence=D8WKY3 (UniProt);InterPro=Mitochodrial transcription termination factor-related (IPR003690);NIAS_FLcDNA=002-103-E12;Expression=AK064154;TENOR=Os02t0783100-01;KEGG=Os02t0783100-01
Chr02	irgsp1_rep	five_prime_UTR	33227591	33227677	.	-	.	Parent=Os02t0783100-01
Chr02	irgsp1_rep	CDS	33226134	33227590	.	-	0	Parent=Os02t0783100-01
Chr02	irgsp1_rep	CDS	33226027	33226027	.	-	1	Parent=Os02t0783100-01
Chr02	irgsp1_rep	three_prime_UTR	33225965	33226026	.	-	.	Parent=Os02t0783100-01
Chr02	irgsp1_rep	three_prime_UTR	33225236	33225345	.	-	.	Parent=Os02t0783100-01
Chr02	irgsp1_rep	three_prime_UTR	33224109	33224495	.	-	.	Parent=Os02t0783100-01
Chr02	irgsp1_rep	mRNA	33224979	33227677	.	-	.	ID=Os02t0783100-02;Name=Os02t0783100-02;Locus_id=Os02g0783100;Note=Mitochodrial transcription termination factor-related family protein.;Transcript_evidence=AK065616 (DDBJ%2C Best hit);ORF_evidence=D8WKY3 (UniProt);InterPro=Mitochodrial transcription termination factor-related (IPR003690);NIAS_FLcDNA=J013027P06;Expression=AK065616;TENOR=Os02t0783100-02;KEGG=Os02t0783100-02
Chr02	irgsp1_rep	five_prime_UTR	33227591	33227677	.	-	.	Parent=Os02t0783100-02
Chr02	irgsp1_rep	CDS	33226134	33227590	.	-	0	Parent=Os02t0783100-02
Chr02	irgsp1_rep	CDS	33226027	33226027	.	-	1	Parent=Os02t0783100-02
Chr02	irgsp1_rep	three_prime_UTR	33225965	33226026	.	-	.	Parent=Os02t0783100-02
Chr02	irgsp1_rep	three_prime_UTR	33224979	33225345	.	-	.	Parent=Os02t0783100-02
Chr02	irgsp1_rep	mRNA	33255933	33264207	.	+	.	ID=Os02t0783650-01;Name=Os02t0783650-01;Locus_id=Os02g0783650;Note=Hypothetical gene.;Transcript_evidence=AK120371 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013070J19;Expression=AK120371;TENOR=Os02t0783650-01;KEGG=Os02t0783650-01
Chr02	irgsp1_rep	five_prime_UTR	33255933	33256006	.	+	.	Parent=Os02t0783650-01
Chr02	irgsp1_rep	five_prime_UTR	33256183	33256300	.	+	.	Parent=Os02t0783650-01
Chr02	irgsp1_rep	five_prime_UTR	33256408	33256473	.	+	.	Parent=Os02t0783650-01
Chr02	irgsp1_rep	five_prime_UTR	33256729	33256809	.	+	.	Parent=Os02t0783650-01
Chr02	irgsp1_rep	five_prime_UTR	33257017	33257334	.	+	.	Parent=Os02t0783650-01
Chr02	irgsp1_rep	five_prime_UTR	33260389	33260529	.	+	.	Parent=Os02t0783650-01
Chr02	irgsp1_rep	five_prime_UTR	33260652	33260706	.	+	.	Parent=Os02t0783650-01
Chr02	irgsp1_rep	five_prime_UTR	33261294	33261356	.	+	.	Parent=Os02t0783650-01
Chr02	irgsp1_rep	CDS	33261357	33261457	.	+	0	Parent=Os02t0783650-01
Chr02	irgsp1_rep	CDS	33261550	33261646	.	+	1	Parent=Os02t0783650-01
Chr02	irgsp1_rep	CDS	33262014	33262185	.	+	0	Parent=Os02t0783650-01
Chr02	irgsp1_rep	CDS	33262614	33262648	.	+	2	Parent=Os02t0783650-01
Chr02	irgsp1_rep	three_prime_UTR	33262649	33262689	.	+	.	Parent=Os02t0783650-01
Chr02	irgsp1_rep	three_prime_UTR	33263052	33263168	.	+	.	Parent=Os02t0783650-01
Chr02	irgsp1_rep	three_prime_UTR	33263435	33263514	.	+	.	Parent=Os02t0783650-01
Chr02	irgsp1_rep	three_prime_UTR	33263732	33263905	.	+	.	Parent=Os02t0783650-01
Chr02	irgsp1_rep	three_prime_UTR	33264143	33264207	.	+	.	Parent=Os02t0783650-01
Chr02	irgsp1_rep	mRNA	33260120	33264235	.	-	.	ID=Os02t0783700-01;Name=Os02t0783700-01;Locus_id=Os02g0783700;Note=Similar to Lysine ketoglutarate reductase/saccharopine dehydrogenase.;Transcript_evidence=AK064521 (DDBJ%2C Best hit);ORF_evidence=E3WF37 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alanine dehydrogenase/PNT%2C C-terminal (IPR007698);NIAS_FLcDNA=002-111-F12;TENOR=Os02t0783700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	33263913	33264235	.	-	.	Parent=Os02t0783700-01
Chr02	irgsp1_rep	CDS	33263732	33263912	.	-	0	Parent=Os02t0783700-01
Chr02	irgsp1_rep	CDS	33263435	33263514	.	-	2	Parent=Os02t0783700-01
Chr02	irgsp1_rep	CDS	33263052	33263168	.	-	0	Parent=Os02t0783700-01
Chr02	irgsp1_rep	CDS	33262614	33262689	.	-	0	Parent=Os02t0783700-01
Chr02	irgsp1_rep	CDS	33262014	33262185	.	-	2	Parent=Os02t0783700-01
Chr02	irgsp1_rep	CDS	33261529	33261646	.	-	1	Parent=Os02t0783700-01
Chr02	irgsp1_rep	three_prime_UTR	33261294	33261528	.	-	.	Parent=Os02t0783700-01
Chr02	irgsp1_rep	three_prime_UTR	33260652	33260706	.	-	.	Parent=Os02t0783700-01
Chr02	irgsp1_rep	three_prime_UTR	33260120	33260529	.	-	.	Parent=Os02t0783700-01
Chr02	irgsp1_rep	mRNA	33253386	33264913	.	-	.	ID=Os02t0783700-02;Name=Os02t0783700-02;Locus_id=Os02g0783700;RAP-DB Gene Symbol Synonym(s)=OsLKR/SDH;RAP-DB Gene Name Synonym(s)=lysine ketoglutarate reductase/saccharopine dehydrogenase;Note=Lysine ketoglutarate reductase/saccharopine dehydrogenase%2C Lysine-degrading enzyme in developing grain;Transcript_evidence=AB574188 (Kita-ake);ORF_evidence=E3WF37;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=NAD(P)-binding domain superfamily (IPR036291),Alanine dehydrogenase/pyridine nucleotide transhydrogenase%2C N-terminal (IPR007886),Alanine dehydrogenase/pyridine nucleotide transhydrogenase%2C NAD(H)-binding domain (IPR007698),LOR/SDH bifunctional enzyme%2C conserved domain (IPR007545),Saccharopine dehydrogenase%2C NADP binding domain (IPR005097),Saccharopine dehydrogenase%2C C-terminal (IPR032095);Manual Curation=September 29%2C 2020;Literature_PMID=21037241
Chr02	irgsp1_rep	CDS	33264893	33264913	.	-	0	Parent=Os02t0783700-02
Chr02	irgsp1_rep	CDS	33264546	33264809	.	-	0	Parent=Os02t0783700-02
Chr02	irgsp1_rep	CDS	33264362	33264448	.	-	0	Parent=Os02t0783700-02
Chr02	irgsp1_rep	CDS	33264143	33264272	.	-	0	Parent=Os02t0783700-02
Chr02	irgsp1_rep	CDS	33263732	33263905	.	-	2	Parent=Os02t0783700-02
Chr02	irgsp1_rep	CDS	33263435	33263514	.	-	2	Parent=Os02t0783700-02
Chr02	irgsp1_rep	CDS	33263052	33263168	.	-	0	Parent=Os02t0783700-02
Chr02	irgsp1_rep	CDS	33262614	33262689	.	-	0	Parent=Os02t0783700-02
Chr02	irgsp1_rep	CDS	33262014	33262185	.	-	2	Parent=Os02t0783700-02
Chr02	irgsp1_rep	CDS	33261550	33261646	.	-	1	Parent=Os02t0783700-02
Chr02	irgsp1_rep	CDS	33261294	33261457	.	-	0	Parent=Os02t0783700-02
Chr02	irgsp1_rep	CDS	33260652	33260706	.	-	1	Parent=Os02t0783700-02
Chr02	irgsp1_rep	CDS	33260389	33260529	.	-	0	Parent=Os02t0783700-02
Chr02	irgsp1_rep	CDS	33257017	33257334	.	-	0	Parent=Os02t0783700-02
Chr02	irgsp1_rep	CDS	33256729	33256809	.	-	0	Parent=Os02t0783700-02
Chr02	irgsp1_rep	CDS	33256408	33256473	.	-	0	Parent=Os02t0783700-02
Chr02	irgsp1_rep	CDS	33256183	33256300	.	-	0	Parent=Os02t0783700-02
Chr02	irgsp1_rep	CDS	33255877	33256006	.	-	2	Parent=Os02t0783700-02
Chr02	irgsp1_rep	CDS	33255700	33255779	.	-	1	Parent=Os02t0783700-02
Chr02	irgsp1_rep	CDS	33255207	33255365	.	-	2	Parent=Os02t0783700-02
Chr02	irgsp1_rep	CDS	33254857	33255115	.	-	2	Parent=Os02t0783700-02
Chr02	irgsp1_rep	CDS	33254294	33254402	.	-	1	Parent=Os02t0783700-02
Chr02	irgsp1_rep	CDS	33253701	33253862	.	-	0	Parent=Os02t0783700-02
Chr02	irgsp1_rep	CDS	33253538	33253607	.	-	0	Parent=Os02t0783700-02
Chr02	irgsp1_rep	CDS	33253386	33253441	.	-	2	Parent=Os02t0783700-02
Chr02	irgsp1_rep	mRNA	33284910	33287792	.	-	.	ID=Os02t0784100-00;Name=Os02t0784100-00;Locus_id=Os02g0784100;Note=Hypothetical conserved gene.;Transcript_evidence=AK064434 (DDBJ%2C Secondary hit);ORF_evidence=B9F3L2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);Expression=AK064434;TENOR=Os02t0784100-00;KEGG=Os02t0784100-00
Chr02	irgsp1_rep	CDS	33287684	33287792	.	-	0	Parent=Os02t0784100-00
Chr02	irgsp1_rep	CDS	33287404	33287516	.	-	2	Parent=Os02t0784100-00
Chr02	irgsp1_rep	CDS	33286693	33286804	.	-	0	Parent=Os02t0784100-00
Chr02	irgsp1_rep	CDS	33286475	33286579	.	-	2	Parent=Os02t0784100-00
Chr02	irgsp1_rep	CDS	33286318	33286384	.	-	2	Parent=Os02t0784100-00
Chr02	irgsp1_rep	CDS	33286113	33286233	.	-	1	Parent=Os02t0784100-00
Chr02	irgsp1_rep	CDS	33285861	33285968	.	-	0	Parent=Os02t0784100-00
Chr02	irgsp1_rep	three_prime_UTR	33285800	33285860	.	-	.	Parent=Os02t0784100-00
Chr02	irgsp1_rep	three_prime_UTR	33285598	33285715	.	-	.	Parent=Os02t0784100-00
Chr02	irgsp1_rep	three_prime_UTR	33284910	33285518	.	-	.	Parent=Os02t0784100-00
Chr02	irgsp1_rep	mRNA	33301587	33303132	.	+	.	ID=Os02t0784400-00;Name=Os02t0784400-00;Locus_id=Os02g0784400;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6K7C9 (UniProt);TENOR=Os02t0784400-00;KEGG=Os02t0784400-00
Chr02	irgsp1_rep	CDS	33301587	33301647	.	+	0	Parent=Os02t0784400-00
Chr02	irgsp1_rep	CDS	33301726	33301911	.	+	2	Parent=Os02t0784400-00
Chr02	irgsp1_rep	CDS	33302278	33302535	.	+	2	Parent=Os02t0784400-00
Chr02	irgsp1_rep	CDS	33302654	33303132	.	+	2	Parent=Os02t0784400-00
Chr02	irgsp1_rep	mRNA	33315563	33316623	.	-	.	ID=Os02t0784700-00;Name=Os02t0784700-00;Locus_id=Os02g0784700;CGSNL Gene Symbol=RPT1B;CGSNL Gene Name=19S REGULATORY PARTICLE ATPASE SUBUNIT 1B;Oryzabase Gene Symbol Synonym(s)=OsRpt1b%2C Rpt1b;Oryzabase Gene Name Synonym(s)=19S regulatory particle ATPase subunit 1b%2C RP triple A-ATPase 1b;Note=Similar to 26S protease regulatory subunit 7 (Fragment).;Transcript_evidence=CT836576 (DDBJ%2C Best hit);ORF_evidence=A6N137 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);Oryzabase=20554;TENOR=Os02t0784700-00;KEGG=Os02t0784700-00
Chr02	irgsp1_rep	five_prime_UTR	33316622	33316623	.	-	.	Parent=Os02t0784700-00
Chr02	irgsp1_rep	CDS	33316571	33316621	.	-	0	Parent=Os02t0784700-00
Chr02	irgsp1_rep	CDS	33316281	33316462	.	-	0	Parent=Os02t0784700-00
Chr02	irgsp1_rep	CDS	33315994	33316169	.	-	1	Parent=Os02t0784700-00
Chr02	irgsp1_rep	CDS	33315712	33315869	.	-	2	Parent=Os02t0784700-00
Chr02	irgsp1_rep	three_prime_UTR	33315563	33315711	.	-	.	Parent=Os02t0784700-00
Chr02	irgsp1_rep	mRNA	33315713	33316650	.	+	.	ID=Os02t0784801-00;Name=Os02t0784801-00;Locus_id=Os02g0784801;Note=Non-protein coding transcript.;Transcript_evidence=BT019240 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0784801-00
Chr02	irgsp1_rep	exon	33315713	33315871	.	+	.	Parent=Os02t0784801-00
Chr02	irgsp1_rep	exon	33315997	33316160	.	+	.	Parent=Os02t0784801-00
Chr02	irgsp1_rep	exon	33316266	33316462	.	+	.	Parent=Os02t0784801-00
Chr02	irgsp1_rep	exon	33316571	33316650	.	+	.	Parent=Os02t0784801-00
Chr02	irgsp1_rep	mRNA	33321822	33322539	.	-	.	ID=Os02t0784900-01;Name=Os02t0784900-01;Locus_id=Os02g0784900;Note=RmlC-like jelly roll fold domain containing protein.;Transcript_evidence=AK288404 (DDBJ%2C Best hit);ORF_evidence=XP_002879405.1 (RefSeq);InterPro=Domain of unknown function DUF861%2C cupin-3 (IPR008579),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710);NIAS_FLcDNA=J090030D05;TENOR=Os02t0784900-01;KEGG=Os02t0784900-01
Chr02	irgsp1_rep	five_prime_UTR	33322461	33322539	.	-	.	Parent=Os02t0784900-01
Chr02	irgsp1_rep	CDS	33321984	33322460	.	-	0	Parent=Os02t0784900-01
Chr02	irgsp1_rep	three_prime_UTR	33321822	33321983	.	-	.	Parent=Os02t0784900-01
Chr02	irgsp1_rep	mRNA	33324540	33325833	.	-	.	ID=Os02t0785000-01;Name=Os02t0785000-01;Locus_id=Os02g0785000;Note=Glycosyl transferase%2C family 31 protein.;Transcript_evidence=AK103670 (DDBJ%2C Best hit);ORF_evidence=NP_200558.1 (RefSeq);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Glycosyl transferase%2C family 31 (IPR002659);NIAS_FLcDNA=J033135M23;Expression=AK103670;TENOR=Os02t0785000-01;KEGG=Os02t0785000-01
Chr02	irgsp1_rep	five_prime_UTR	33325727	33325833	.	-	.	Parent=Os02t0785000-01
Chr02	irgsp1_rep	CDS	33324740	33325726	.	-	0	Parent=Os02t0785000-01
Chr02	irgsp1_rep	three_prime_UTR	33324540	33324739	.	-	.	Parent=Os02t0785000-01
Chr02	irgsp1_rep	mRNA	33330498	33336168	.	-	.	ID=Os02t0785200-00;Name=Os02t0785200-00;Locus_id=Os02g0785200;Note=Glycosyl transferase%2C family 31 domain containing protein.;Transcript_evidence=AK361620 (DDBJ);ORF_evidence=Q6K8V6 (UniProt);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Glycosyl transferase%2C family 31 (IPR002659);TENOR=Os02t0785200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	33335750	33336168	.	-	0	Parent=Os02t0785200-00
Chr02	irgsp1_rep	CDS	33330509	33331310	.	-	1	Parent=Os02t0785200-00
Chr02	irgsp1_rep	three_prime_UTR	33330498	33330508	.	-	.	Parent=Os02t0785200-00
Chr02	irgsp1_rep	mRNA	33349102	33353623	.	-	.	ID=Os02t0785600-00;Name=Os02t0785600-00;Locus_id=Os02g0785600;Note=Hypothetical conserved gene.;Transcript_evidence=AK119927 (DDBJ%2C Secondary hit);ORF_evidence=Q8S0Y0 (UniProt);Expression=AK119927;TENOR=Os02t0785600-00;KEGG=Os02t0785600-00
Chr02	irgsp1_rep	five_prime_UTR	33353442	33353623	.	-	.	Parent=Os02t0785600-00
Chr02	irgsp1_rep	CDS	33353191	33353441	.	-	0	Parent=Os02t0785600-00
Chr02	irgsp1_rep	CDS	33352555	33352600	.	-	1	Parent=Os02t0785600-00
Chr02	irgsp1_rep	three_prime_UTR	33352363	33352554	.	-	.	Parent=Os02t0785600-00
Chr02	irgsp1_rep	three_prime_UTR	33351471	33352266	.	-	.	Parent=Os02t0785600-00
Chr02	irgsp1_rep	three_prime_UTR	33349538	33349594	.	-	.	Parent=Os02t0785600-00
Chr02	irgsp1_rep	three_prime_UTR	33349102	33349340	.	-	.	Parent=Os02t0785600-00
Chr02	irgsp1_rep	mRNA	33353940	33355213	.	-	.	ID=Os02t0785700-00;Name=Os02t0785700-00;Locus_id=Os02g0785700;Note=Hypothetical conserved gene.;Transcript_evidence=CT835382 (DDBJ%2C Best hit);ORF_evidence=Q6K8V2 (UniProt);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Glycosyl transferase%2C family 31 (IPR002659);TENOR=Os02t0785700-00;KEGG=Os02t0785700-00
Chr02	irgsp1_rep	five_prime_UTR	33355118	33355213	.	-	.	Parent=Os02t0785700-00
Chr02	irgsp1_rep	CDS	33354176	33355117	.	-	0	Parent=Os02t0785700-00
Chr02	irgsp1_rep	three_prime_UTR	33353940	33354175	.	-	.	Parent=Os02t0785700-00
Chr02	irgsp1_rep	mRNA	33359344	33361383	.	+	.	ID=Os02t0785800-01;Name=Os02t0785800-01;Locus_id=Os02g0785800;Oryzabase Gene Name Synonym(s)=Ribosomal protein L35a.e;Note=Similar to Ribosomal protein L35A.;Transcript_evidence=AK121768 (DDBJ%2C Best hit);ORF_evidence=A6N1I6 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L35A (IPR001780),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Ribosomal protein L35Ae%2C conserved site (IPR018266);NIAS_FLcDNA=J033092B03;Oryzabase=17678;Expression=AK121768;TENOR=Os02t0785800-01;KEGG=Os02t0785800-01
Chr02	irgsp1_rep	five_prime_UTR	33359344	33359439	.	+	.	Parent=Os02t0785800-01
Chr02	irgsp1_rep	CDS	33359440	33359507	.	+	0	Parent=Os02t0785800-01
Chr02	irgsp1_rep	CDS	33359606	33359834	.	+	1	Parent=Os02t0785800-01
Chr02	irgsp1_rep	CDS	33359917	33359958	.	+	0	Parent=Os02t0785800-01
Chr02	irgsp1_rep	three_prime_UTR	33359959	33359960	.	+	.	Parent=Os02t0785800-01
Chr02	irgsp1_rep	three_prime_UTR	33361114	33361383	.	+	.	Parent=Os02t0785800-01
Chr02	irgsp1_rep	mRNA	33359394	33361394	.	+	.	ID=Os02t0785800-02;Name=Os02t0785800-02;Locus_id=Os02g0785800;Oryzabase Gene Name Synonym(s)=Ribosomal protein L35a.e;Note=Similar to Ribosomal protein L35A.;Transcript_evidence=AK063859 (DDBJ%2C Best hit);ORF_evidence=A6N1I6 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L35A (IPR001780),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Ribosomal protein L35Ae%2C conserved site (IPR018266);NIAS_FLcDNA=001-122-D08;Oryzabase=17678;Expression=AK063859;TENOR=Os02t0785800-02;KEGG=Os02t0785800-02
Chr02	irgsp1_rep	five_prime_UTR	33359394	33359439	.	+	.	Parent=Os02t0785800-02
Chr02	irgsp1_rep	CDS	33359440	33359507	.	+	0	Parent=Os02t0785800-02
Chr02	irgsp1_rep	CDS	33359606	33359834	.	+	1	Parent=Os02t0785800-02
Chr02	irgsp1_rep	CDS	33359917	33359958	.	+	0	Parent=Os02t0785800-02
Chr02	irgsp1_rep	three_prime_UTR	33359959	33359960	.	+	.	Parent=Os02t0785800-02
Chr02	irgsp1_rep	three_prime_UTR	33361114	33361394	.	+	.	Parent=Os02t0785800-02
Chr02	irgsp1_rep	mRNA	33361926	33371022	.	+	.	ID=Os02t0785900-00;Name=Os02t0785900-00;Locus_id=Os02g0785900;Oryzabase Gene Symbol Synonym(s)=APC4%2C OsAPC4;Oryzabase Gene Name Synonym(s)=ANAPHASE PROMOTING COMPLEX 4;Note=Similar to nucleotide binding.;Transcript_evidence=BT060981 (DDBJ);ORF_evidence=NP_001048331.2 (RefSeq);GO=Biological Process: regulation of mitotic metaphase/anaphase transition (GO:0030071),Biological Process: anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process (GO:0031145),Cellular Component: anaphase-promoting complex (GO:0005680),Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),Anaphase-promoting complex subunit 4 (IPR024789);Oryzabase=21056;TENOR=Os02t0785900-00;KEGG=Os02t0785900-00
Chr02	irgsp1_rep	five_prime_UTR	33361926	33361972	.	+	.	Parent=Os02t0785900-00
Chr02	irgsp1_rep	CDS	33361973	33362062	.	+	0	Parent=Os02t0785900-00
Chr02	irgsp1_rep	CDS	33364257	33364368	.	+	0	Parent=Os02t0785900-00
Chr02	irgsp1_rep	CDS	33364577	33364668	.	+	2	Parent=Os02t0785900-00
Chr02	irgsp1_rep	CDS	33365116	33365259	.	+	0	Parent=Os02t0785900-00
Chr02	irgsp1_rep	three_prime_UTR	33365260	33365298	.	+	.	Parent=Os02t0785900-00
Chr02	irgsp1_rep	three_prime_UTR	33365394	33365682	.	+	.	Parent=Os02t0785900-00
Chr02	irgsp1_rep	three_prime_UTR	33366327	33366407	.	+	.	Parent=Os02t0785900-00
Chr02	irgsp1_rep	three_prime_UTR	33366481	33366620	.	+	.	Parent=Os02t0785900-00
Chr02	irgsp1_rep	three_prime_UTR	33366969	33367129	.	+	.	Parent=Os02t0785900-00
Chr02	irgsp1_rep	three_prime_UTR	33367207	33367307	.	+	.	Parent=Os02t0785900-00
Chr02	irgsp1_rep	three_prime_UTR	33367402	33367476	.	+	.	Parent=Os02t0785900-00
Chr02	irgsp1_rep	three_prime_UTR	33367725	33367904	.	+	.	Parent=Os02t0785900-00
Chr02	irgsp1_rep	three_prime_UTR	33368429	33368512	.	+	.	Parent=Os02t0785900-00
Chr02	irgsp1_rep	three_prime_UTR	33368595	33368696	.	+	.	Parent=Os02t0785900-00
Chr02	irgsp1_rep	three_prime_UTR	33369228	33369332	.	+	.	Parent=Os02t0785900-00
Chr02	irgsp1_rep	three_prime_UTR	33369530	33369668	.	+	.	Parent=Os02t0785900-00
Chr02	irgsp1_rep	three_prime_UTR	33369974	33370177	.	+	.	Parent=Os02t0785900-00
Chr02	irgsp1_rep	three_prime_UTR	33370266	33370415	.	+	.	Parent=Os02t0785900-00
Chr02	irgsp1_rep	three_prime_UTR	33370696	33370780	.	+	.	Parent=Os02t0785900-00
Chr02	irgsp1_rep	three_prime_UTR	33370881	33371022	.	+	.	Parent=Os02t0785900-00
Chr02	irgsp1_rep	mRNA	33372431	33380829	.	+	.	ID=Os02t0786000-01;Name=Os02t0786000-01;Locus_id=Os02g0786000;Note=Similar to predicted protein.;Transcript_evidence=AK242931 (DDBJ%2C Best hit);ORF_evidence=Q2HUD0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),Ribosome control protein 1 (IPR009771),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943);NIAS_FLcDNA=J090086E14;TENOR=Os02t0786000-01;KEGG=Os02t0786000-01
Chr02	irgsp1_rep	five_prime_UTR	33372431	33372527	.	+	.	Parent=Os02t0786000-01
Chr02	irgsp1_rep	CDS	33372528	33372773	.	+	0	Parent=Os02t0786000-01
Chr02	irgsp1_rep	CDS	33372861	33373009	.	+	0	Parent=Os02t0786000-01
Chr02	irgsp1_rep	CDS	33373107	33373188	.	+	1	Parent=Os02t0786000-01
Chr02	irgsp1_rep	CDS	33373315	33373730	.	+	0	Parent=Os02t0786000-01
Chr02	irgsp1_rep	CDS	33374117	33374546	.	+	1	Parent=Os02t0786000-01
Chr02	irgsp1_rep	CDS	33374648	33374871	.	+	0	Parent=Os02t0786000-01
Chr02	irgsp1_rep	CDS	33375166	33375361	.	+	1	Parent=Os02t0786000-01
Chr02	irgsp1_rep	CDS	33375442	33375581	.	+	0	Parent=Os02t0786000-01
Chr02	irgsp1_rep	CDS	33375660	33375834	.	+	1	Parent=Os02t0786000-01
Chr02	irgsp1_rep	CDS	33375957	33376010	.	+	0	Parent=Os02t0786000-01
Chr02	irgsp1_rep	CDS	33376208	33376384	.	+	0	Parent=Os02t0786000-01
Chr02	irgsp1_rep	CDS	33377339	33377451	.	+	0	Parent=Os02t0786000-01
Chr02	irgsp1_rep	CDS	33377590	33377772	.	+	1	Parent=Os02t0786000-01
Chr02	irgsp1_rep	CDS	33378077	33378134	.	+	1	Parent=Os02t0786000-01
Chr02	irgsp1_rep	CDS	33378302	33378361	.	+	0	Parent=Os02t0786000-01
Chr02	irgsp1_rep	CDS	33378460	33378501	.	+	0	Parent=Os02t0786000-01
Chr02	irgsp1_rep	CDS	33378583	33378713	.	+	0	Parent=Os02t0786000-01
Chr02	irgsp1_rep	CDS	33378792	33378927	.	+	1	Parent=Os02t0786000-01
Chr02	irgsp1_rep	CDS	33379011	33379088	.	+	0	Parent=Os02t0786000-01
Chr02	irgsp1_rep	CDS	33379653	33379769	.	+	0	Parent=Os02t0786000-01
Chr02	irgsp1_rep	CDS	33379980	33380042	.	+	0	Parent=Os02t0786000-01
Chr02	irgsp1_rep	CDS	33380126	33380227	.	+	0	Parent=Os02t0786000-01
Chr02	irgsp1_rep	three_prime_UTR	33380228	33380466	.	+	.	Parent=Os02t0786000-01
Chr02	irgsp1_rep	three_prime_UTR	33380660	33380829	.	+	.	Parent=Os02t0786000-01
Chr02	irgsp1_rep	mRNA	33387811	33392575	.	+	.	ID=Os02t0786200-01;Name=Os02t0786200-01;Locus_id=Os02g0786200;Note=Serine-threonine/tyrosine-protein kinase domain containing protein.;Transcript_evidence=AK067937 (DDBJ%2C Best hit);ORF_evidence=B8AE14 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J013122E21;TENOR=Os02t0786200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	33387811	33387812	.	+	.	Parent=Os02t0786200-01
Chr02	irgsp1_rep	CDS	33387813	33389786	.	+	0	Parent=Os02t0786200-01
Chr02	irgsp1_rep	CDS	33389863	33389973	.	+	0	Parent=Os02t0786200-01
Chr02	irgsp1_rep	CDS	33390058	33390157	.	+	0	Parent=Os02t0786200-01
Chr02	irgsp1_rep	CDS	33391789	33391958	.	+	2	Parent=Os02t0786200-01
Chr02	irgsp1_rep	three_prime_UTR	33391959	33392156	.	+	.	Parent=Os02t0786200-01
Chr02	irgsp1_rep	three_prime_UTR	33392247	33392575	.	+	.	Parent=Os02t0786200-01
Chr02	irgsp1_rep	mRNA	33400276	33405605	.	+	.	ID=Os02t0786400-00;Name=Os02t0786400-00;Locus_id=Os02g0786400;Note=Similar to DNA-binding transcription factor blind 1.;Transcript_evidence=AK368660 (DDBJ);ORF_evidence=E7D5Q3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: extracellular region (GO:0005576),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Allergen V5/Tpx-1-related (IPR001283),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),CAP domain (IPR014044),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930),Allergen V5/Tpx-1-related%2C conserved site (IPR018244);TENOR=Os02t0786400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	33400276	33400621	.	+	0	Parent=Os02t0786400-00
Chr02	irgsp1_rep	CDS	33401599	33401728	.	+	2	Parent=Os02t0786400-00
Chr02	irgsp1_rep	CDS	33402019	33402418	.	+	1	Parent=Os02t0786400-00
Chr02	irgsp1_rep	CDS	33405171	33405605	.	+	0	Parent=Os02t0786400-00
Chr02	irgsp1_rep	mRNA	33402016	33402420	.	-	.	ID=Os02t0786450-00;Name=Os02t0786450-00;Locus_id=Os02g0786450;Note=Hypothetical protein.;Transcript_evidence=EU971393 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0786450-00
Chr02	irgsp1_rep	five_prime_UTR	33402420	33402420	.	-	.	Parent=Os02t0786450-00
Chr02	irgsp1_rep	CDS	33402066	33402419	.	-	0	Parent=Os02t0786450-00
Chr02	irgsp1_rep	three_prime_UTR	33402016	33402065	.	-	.	Parent=Os02t0786450-00
Chr02	irgsp1_rep	mRNA	33408020	33408939	.	+	.	ID=Os02t0786500-01;Name=Os02t0786500-01;Locus_id=Os02g0786500;CGSNL Gene Symbol=PR1-21;CGSNL Gene Name=PATHOGENESIS-RELATED GENE 1-21;Oryzabase Gene Symbol Synonym(s)=OsPR1#021%2C OsPR1-21;Oryzabase Gene Name Synonym(s)=pathogenesis-related protein 1-21%2C PR protein 1-21;Note=Similar to PR-1a pathogenesis related protein (Hv-1a) precursor.;Transcript_evidence=AK107467 (DDBJ%2C Best hit);ORF_evidence=NP_001152581.1 (RefSeq);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Allergen V5/Tpx-1-related (IPR001283),CAP domain (IPR014044),Allergen V5/Tpx-1-related%2C conserved site (IPR018244);NIAS_FLcDNA=002-129-A12;Oryzabase=13349;Expression=AK107467;TENOR=Os02t0786500-01;KEGG=Os02t0786500-01
Chr02	irgsp1_rep	five_prime_UTR	33408020	33408067	.	+	.	Parent=Os02t0786500-01
Chr02	irgsp1_rep	CDS	33408068	33408586	.	+	0	Parent=Os02t0786500-01
Chr02	irgsp1_rep	three_prime_UTR	33408587	33408939	.	+	.	Parent=Os02t0786500-01
Chr02	irgsp1_rep	mRNA	33424949	33426476	.	+	.	ID=Os02t0786900-01;Name=Os02t0786900-01;Locus_id=Os02g0786900;CGSNL Gene Symbol=PR1-22;CGSNL Gene Name=PATHOGENESIS-RELATED GENE 1-22;Oryzabase Gene Symbol Synonym(s)=OsPR1#022%2C OsPR1-22;Oryzabase Gene Name Synonym(s)=pathogenesis-related protein 1-22%2C PR protein 1-22;Note=Similar to Pathogenesis-related protein PR-1 precursor.;Transcript_evidence=AK105575 (DDBJ%2C Best hit);ORF_evidence=NP_001147051.1 (RefSeq);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Allergen V5/Tpx-1-related (IPR001283),Ves allergen (IPR002413),CAP domain (IPR014044),Allergen V5/Tpx-1-related%2C conserved site (IPR018244);NIAS_FLcDNA=001-128-D06;Oryzabase=13350;Expression=AK105575;TENOR=Os02t0786900-01;KEGG=Os02t0786900-01
Chr02	irgsp1_rep	five_prime_UTR	33424949	33425754	.	+	.	Parent=Os02t0786900-01
Chr02	irgsp1_rep	CDS	33425755	33426354	.	+	0	Parent=Os02t0786900-01
Chr02	irgsp1_rep	three_prime_UTR	33426355	33426476	.	+	.	Parent=Os02t0786900-01
Chr02	irgsp1_rep	mRNA	33427245	33427781	.	-	.	ID=Os02t0787000-00;Name=Os02t0787000-00;Locus_id=Os02g0787000;Note=Allergen V5/Tpx-1 related family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001048338.1 (RefSeq);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Allergen V5/Tpx-1-related (IPR001283),Ves allergen (IPR002413),CAP domain (IPR014044),Allergen V5/Tpx-1-related%2C conserved site (IPR018244);TENOR=Os02t0787000-00;KEGG=Os02t0787000-00
Chr02	irgsp1_rep	CDS	33427245	33427781	.	-	0	Parent=Os02t0787000-00
Chr02	irgsp1_rep	mRNA	33429949	33433751	.	+	.	ID=Os02t0787100-01;Name=Os02t0787100-01;Locus_id=Os02g0787100;Note=Similar to serine esterase family protein.;Transcript_evidence=AK287826 (DDBJ%2C Best hit);ORF_evidence=NP_001152051.1 (RefSeq);InterPro=Domain of unknown function DUF676%2C lipase-like (IPR007751);NIAS_FLcDNA=J065185A07;TENOR=Os02t0787100-01;KEGG=Os02t0787100-01
Chr02	irgsp1_rep	five_prime_UTR	33429949	33429982	.	+	.	Parent=Os02t0787100-01
Chr02	irgsp1_rep	CDS	33429983	33430422	.	+	0	Parent=Os02t0787100-01
Chr02	irgsp1_rep	CDS	33430523	33430590	.	+	1	Parent=Os02t0787100-01
Chr02	irgsp1_rep	CDS	33431188	33431258	.	+	2	Parent=Os02t0787100-01
Chr02	irgsp1_rep	CDS	33431412	33431663	.	+	0	Parent=Os02t0787100-01
Chr02	irgsp1_rep	CDS	33431980	33432143	.	+	0	Parent=Os02t0787100-01
Chr02	irgsp1_rep	CDS	33432238	33432293	.	+	1	Parent=Os02t0787100-01
Chr02	irgsp1_rep	CDS	33432399	33432451	.	+	2	Parent=Os02t0787100-01
Chr02	irgsp1_rep	CDS	33432551	33432668	.	+	0	Parent=Os02t0787100-01
Chr02	irgsp1_rep	CDS	33432891	33432988	.	+	2	Parent=Os02t0787100-01
Chr02	irgsp1_rep	CDS	33433367	33433438	.	+	0	Parent=Os02t0787100-01
Chr02	irgsp1_rep	three_prime_UTR	33433439	33433751	.	+	.	Parent=Os02t0787100-01
Chr02	irgsp1_rep	mRNA	33434089	33439102	.	+	.	ID=Os02t0787200-01;Name=Os02t0787200-01;Locus_id=Os02g0787200;CGSNL Gene Symbol=RLCK87;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 87;Oryzabase Gene Symbol Synonym(s)=OsRLCK87;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 87;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK069654 (DDBJ%2C Best hit);ORF_evidence=Q9ATX1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: response to stress (GO:0006950),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),UspA (IPR006016),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023030L14;Oryzabase=18798;Expression=AK069654;TENOR=Os02t0787200-01;KEGG=Os02t0787200-01
Chr02	irgsp1_rep	five_prime_UTR	33434089	33434280	.	+	.	Parent=Os02t0787200-01
Chr02	irgsp1_rep	CDS	33434281	33434443	.	+	0	Parent=Os02t0787200-01
Chr02	irgsp1_rep	CDS	33434532	33434629	.	+	2	Parent=Os02t0787200-01
Chr02	irgsp1_rep	CDS	33434715	33434836	.	+	0	Parent=Os02t0787200-01
Chr02	irgsp1_rep	CDS	33434944	33435201	.	+	1	Parent=Os02t0787200-01
Chr02	irgsp1_rep	CDS	33436164	33436425	.	+	1	Parent=Os02t0787200-01
Chr02	irgsp1_rep	CDS	33436546	33436647	.	+	0	Parent=Os02t0787200-01
Chr02	irgsp1_rep	CDS	33437438	33438658	.	+	0	Parent=Os02t0787200-01
Chr02	irgsp1_rep	CDS	33438757	33438849	.	+	0	Parent=Os02t0787200-01
Chr02	irgsp1_rep	three_prime_UTR	33438850	33439102	.	+	.	Parent=Os02t0787200-01
Chr02	irgsp1_rep	mRNA	33437315	33439048	.	-	.	ID=Os02t0787250-01;Name=Os02t0787250-01;Locus_id=Os02g0787250;Note=Conserved hypothetical protein.;Transcript_evidence=AK241405 (DDBJ%2C Best hit);ORF_evidence=NP_001173177.1 (RefSeq);NIAS_FLcDNA=J065159E06;TENOR=Os02t0787250-01;KEGG=Os02t0787250-01
Chr02	irgsp1_rep	five_prime_UTR	33438650	33439048	.	-	.	Parent=Os02t0787250-01
Chr02	irgsp1_rep	CDS	33437375	33438649	.	-	0	Parent=Os02t0787250-01
Chr02	irgsp1_rep	three_prime_UTR	33437315	33437374	.	-	.	Parent=Os02t0787250-01
Chr02	irgsp1_rep	mRNA	33442070	33443948	.	-	.	ID=Os02t0787300-01;Name=Os02t0787300-01;Locus_id=Os02g0787300;RAP-DB Gene Symbol Synonym(s)=SMG1%2C OsMKK4%2C MKK4%2C OsMKK4/SMG1;RAP-DB Gene Name Synonym(s)=SMALL GRAIN 1%2C MAPK kinase 4%2C mitogen-activated protein kinase kinase 4%2C small grain1;CGSNL Gene Symbol=SMG1;CGSNL Gene Name=SMALL GRAIN 1;Oryzabase Gene Symbol Synonym(s)=OsMKK4%2C MKK4%2C OsMKK4/SMG1%2C OsMAPKK4%2C MAPKK4%2C OsMEK4%2C MEK4%2C OsSMG1;Oryzabase Gene Name Synonym(s)=MAPK kinase 4%2C mitogen-activated protein kinase kinase 4%2C small grain1%2C LARGE11%2C large grain 11;Note=Mitogen-activated protein kinase kinase 4%2C Defense response%2C Cell proliferation%2C Grain growth;Transcript_evidence=AK120525;ORF_evidence=Q6K4Q0;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine/threonine/dual specificity protein kinase%2C catalytic  domain (IPR002290),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J013126P12;Manual Curation=February 2%2C 2015;Literature_PMID=24320692,20525005;Oryzabase=8831;TENOR=Os02t0787300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	33443842	33443948	.	-	.	Parent=Os02t0787300-01
Chr02	irgsp1_rep	CDS	33442732	33443841	.	-	0	Parent=Os02t0787300-01
Chr02	irgsp1_rep	three_prime_UTR	33442070	33442731	.	-	.	Parent=Os02t0787300-01
Chr02	irgsp1_rep	mRNA	33456998	33457154	.	-	.	ID=Os02t0787400-00;Name=Os02t0787400-00;Locus_id=Os02g0787400;Note=Non-protein coding transcript.;Transcript_evidence=EU947580 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0787400-00
Chr02	irgsp1_rep	exon	33456998	33457154	.	-	.	Parent=Os02t0787400-00
Chr02	irgsp1_rep	mRNA	33459228	33461205	.	+	.	ID=Os02t0787500-01;Name=Os02t0787500-01;Locus_id=Os02g0787500;Oryzabase Gene Symbol Synonym(s)=OsRFPH2-22;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPH2-22%2C RING-H2 protein 22;Note=Conserved hypothetical protein.;Transcript_evidence=AK066424 (DDBJ%2C Best hit);ORF_evidence=A3AC39 (UniProt);NIAS_FLcDNA=J013061F22;Oryzabase=11783;TENOR=Os02t0787500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	33459228	33459369	.	+	.	Parent=Os02t0787500-01
Chr02	irgsp1_rep	CDS	33459370	33459568	.	+	0	Parent=Os02t0787500-01
Chr02	irgsp1_rep	CDS	33459609	33459637	.	+	2	Parent=Os02t0787500-01
Chr02	irgsp1_rep	three_prime_UTR	33459638	33459953	.	+	.	Parent=Os02t0787500-01
Chr02	irgsp1_rep	three_prime_UTR	33460216	33460341	.	+	.	Parent=Os02t0787500-01
Chr02	irgsp1_rep	three_prime_UTR	33460412	33460697	.	+	.	Parent=Os02t0787500-01
Chr02	irgsp1_rep	three_prime_UTR	33460800	33461205	.	+	.	Parent=Os02t0787500-01
Chr02	irgsp1_rep	mRNA	33459490	33460942	.	-	.	ID=Os02t0787533-00;Name=Os02t0787533-00;Locus_id=Os02g0787533;Note=Hypothetical protein.;Transcript_evidence=tplb0030e06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0787533-00
Chr02	irgsp1_rep	five_prime_UTR	33460785	33460942	.	-	.	Parent=Os02t0787533-00
Chr02	irgsp1_rep	five_prime_UTR	33460565	33460683	.	-	.	Parent=Os02t0787533-00
Chr02	irgsp1_rep	CDS	33460397	33460564	.	-	0	Parent=Os02t0787533-00
Chr02	irgsp1_rep	CDS	33460175	33460332	.	-	0	Parent=Os02t0787533-00
Chr02	irgsp1_rep	CDS	33459904	33459922	.	-	1	Parent=Os02t0787533-00
Chr02	irgsp1_rep	three_prime_UTR	33459490	33459903	.	-	.	Parent=Os02t0787533-00
Chr02	irgsp1_rep	mRNA	33469138	33475992	.	+	.	ID=Os02t0787600-01;Name=Os02t0787600-01;Locus_id=Os02g0787600;Oryzabase Gene Symbol Synonym(s)=OsGLR1.2%2C GLR1.2%2C OsGLR1.4%2C GLR1.4;Oryzabase Gene Name Synonym(s)=Glutamate receptor homolog 1.2%2C GLUTAMATE RECEPTOR-LIKE 1.4;Note=Glutamate receptor-related domain containing protein.;Transcript_evidence=AK071978 (DDBJ%2C Best hit);ORF_evidence=A2XAE0 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Cellular Component: outer membrane-bounded periplasmic space (GO:0030288),Molecular Function: ionotropic glutamate receptor activity (GO:0004970),Molecular Function: transporter activity (GO:0005215),Molecular Function: extracellular-glutamate-gated ion channel activity (GO:0005234);InterPro=Ionotropic glutamate receptor (IPR001320),Extracellular solute-binding protein%2C family 3 (IPR001638),Extracellular ligand-binding receptor (IPR001828),Ionotropic glutamate receptor%2C plant (IPR017103);NIAS_FLcDNA=J013088I16;Oryzabase=15492;Expression=AK071978;TENOR=Os02t0787600-01;KEGG=Os02t0787600-01
Chr02	irgsp1_rep	five_prime_UTR	33469138	33469176	.	+	.	Parent=Os02t0787600-01
Chr02	irgsp1_rep	CDS	33469177	33469465	.	+	0	Parent=Os02t0787600-01
Chr02	irgsp1_rep	CDS	33472301	33473607	.	+	2	Parent=Os02t0787600-01
Chr02	irgsp1_rep	CDS	33474048	33474360	.	+	0	Parent=Os02t0787600-01
Chr02	irgsp1_rep	CDS	33474697	33475754	.	+	2	Parent=Os02t0787600-01
Chr02	irgsp1_rep	three_prime_UTR	33475755	33475992	.	+	.	Parent=Os02t0787600-01
Chr02	irgsp1_rep	mRNA	33472257	33475994	.	+	.	ID=Os02t0787600-02;Name=Os02t0787600-02;Locus_id=Os02g0787600;Oryzabase Gene Symbol Synonym(s)=OsGLR1.2%2C GLR1.2%2C OsGLR1.4%2C GLR1.4;Oryzabase Gene Name Synonym(s)=Glutamate receptor homolog 1.2%2C GLUTAMATE RECEPTOR-LIKE 1.4;Note=Hypothetical conserved gene.;Transcript_evidence=AK072337 (DDBJ%2C Best hit);ORF_evidence=A2XAE0 (UniProt);InterPro=Extracellular ligand-binding receptor (IPR001828);NIAS_FLcDNA=J023043H01;Oryzabase=15492;Expression=AK072337;TENOR=Os02t0787600-02;KEGG=Os02t0787600-02
Chr02	irgsp1_rep	five_prime_UTR	33472257	33472257	.	+	.	Parent=Os02t0787600-02
Chr02	irgsp1_rep	CDS	33472258	33473718	.	+	0	Parent=Os02t0787600-02
Chr02	irgsp1_rep	three_prime_UTR	33473719	33474360	.	+	.	Parent=Os02t0787600-02
Chr02	irgsp1_rep	three_prime_UTR	33474697	33475994	.	+	.	Parent=Os02t0787600-02
Chr02	irgsp1_rep	mRNA	33472101	33474009	.	-	.	ID=Os02t0787700-01;Name=Os02t0787700-01;Locus_id=Os02g0787700;Note=Hypothetical protein.;Transcript_evidence=AK070412 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023054E23;Expression=AK070412;TENOR=Os02t0787700-01;KEGG=Os02t0787700-01
Chr02	irgsp1_rep	five_prime_UTR	33473478	33474009	.	-	.	Parent=Os02t0787700-01
Chr02	irgsp1_rep	CDS	33472950	33473477	.	-	0	Parent=Os02t0787700-01
Chr02	irgsp1_rep	three_prime_UTR	33472101	33472949	.	-	.	Parent=Os02t0787700-01
Chr02	irgsp1_rep	mRNA	33476467	33483947	.	-	.	ID=Os02t0787800-01;Name=Os02t0787800-01;Locus_id=Os02g0787800;CGSNL Gene Symbol=DGK3;CGSNL Gene Name=DIACYLGLYCEROL KINASE 3;Oryzabase Gene Symbol Synonym(s)=OsDGK3;Oryzabase Gene Name Synonym(s)=Diacylglycerol kinase 3;Note=Diacylglycerol kinase accessory region domain containing protein.;Transcript_evidence=AK065676 (DDBJ%2C Best hit);ORF_evidence=B6TW73 (UniProt);GO=Biological Process: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway (GO:0007205),Molecular Function: diacylglycerol kinase activity (GO:0004143);InterPro=Diacylglycerol kinase%2C accessory domain (IPR000756),Diacylglycerol kinase%2C catalytic domain (IPR001206),Diacylglycerol kinase%2C plant (IPR016961);NIAS_FLcDNA=J013036I11;Oryzabase=20210;Expression=AK065676;TENOR=Os02t0787800-01;KEGG=Os02t0787800-01 (EC:2.7.1.107)
Chr02	irgsp1_rep	five_prime_UTR	33483887	33483947	.	-	.	Parent=Os02t0787800-01
Chr02	irgsp1_rep	CDS	33483533	33483886	.	-	0	Parent=Os02t0787800-01
Chr02	irgsp1_rep	CDS	33482271	33482393	.	-	0	Parent=Os02t0787800-01
Chr02	irgsp1_rep	CDS	33481874	33482011	.	-	0	Parent=Os02t0787800-01
Chr02	irgsp1_rep	CDS	33481663	33481748	.	-	0	Parent=Os02t0787800-01
Chr02	irgsp1_rep	CDS	33481250	33481346	.	-	1	Parent=Os02t0787800-01
Chr02	irgsp1_rep	CDS	33480446	33480515	.	-	0	Parent=Os02t0787800-01
Chr02	irgsp1_rep	CDS	33479889	33479971	.	-	2	Parent=Os02t0787800-01
Chr02	irgsp1_rep	CDS	33479385	33479455	.	-	0	Parent=Os02t0787800-01
Chr02	irgsp1_rep	CDS	33478613	33478690	.	-	1	Parent=Os02t0787800-01
Chr02	irgsp1_rep	CDS	33477700	33477787	.	-	1	Parent=Os02t0787800-01
Chr02	irgsp1_rep	CDS	33477288	33477404	.	-	0	Parent=Os02t0787800-01
Chr02	irgsp1_rep	CDS	33476832	33476993	.	-	0	Parent=Os02t0787800-01
Chr02	irgsp1_rep	three_prime_UTR	33476810	33476831	.	-	.	Parent=Os02t0787800-01
Chr02	irgsp1_rep	three_prime_UTR	33476467	33476713	.	-	.	Parent=Os02t0787800-01
Chr02	irgsp1_rep	mRNA	33476521	33483860	.	+	.	ID=Os02t0787966-00;Name=Os02t0787966-00;Locus_id=Os02g0787966;Note=Hypothetical protein.;Transcript_evidence=tplb0045d24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0787966-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	33476521	33476992	.	+	.	Parent=Os02t0787966-00
Chr02	irgsp1_rep	five_prime_UTR	33477287	33477404	.	+	.	Parent=Os02t0787966-00
Chr02	irgsp1_rep	five_prime_UTR	33477700	33477792	.	+	.	Parent=Os02t0787966-00
Chr02	irgsp1_rep	five_prime_UTR	33478620	33478675	.	+	.	Parent=Os02t0787966-00
Chr02	irgsp1_rep	CDS	33478676	33478677	.	+	0	Parent=Os02t0787966-00
Chr02	irgsp1_rep	CDS	33479370	33479455	.	+	1	Parent=Os02t0787966-00
Chr02	irgsp1_rep	CDS	33479889	33479973	.	+	2	Parent=Os02t0787966-00
Chr02	irgsp1_rep	CDS	33480440	33480500	.	+	1	Parent=Os02t0787966-00
Chr02	irgsp1_rep	three_prime_UTR	33480501	33480504	.	+	.	Parent=Os02t0787966-00
Chr02	irgsp1_rep	three_prime_UTR	33481243	33481362	.	+	.	Parent=Os02t0787966-00
Chr02	irgsp1_rep	three_prime_UTR	33481678	33481766	.	+	.	Parent=Os02t0787966-00
Chr02	irgsp1_rep	three_prime_UTR	33481895	33481991	.	+	.	Parent=Os02t0787966-00
Chr02	irgsp1_rep	three_prime_UTR	33482255	33482411	.	+	.	Parent=Os02t0787966-00
Chr02	irgsp1_rep	three_prime_UTR	33483551	33483860	.	+	.	Parent=Os02t0787966-00
Chr02	irgsp1_rep	mRNA	33490232	33491122	.	-	.	ID=Os02t0788133-00;Name=Os02t0788133-00;Locus_id=Os02g0788133;Note=Similar to Thioredoxin.;Transcript_evidence=EU964808 (DDBJ);ORF_evidence=B6TIJ3 (UniProt);InterPro=Domain of unknown function DUF862%2C eukaryotic (IPR008580);TENOR=Os02t0788133-00
Chr02	irgsp1_rep	CDS	33490806	33491122	.	-	0	Parent=Os02t0788133-00
Chr02	irgsp1_rep	CDS	33490578	33490710	.	-	1	Parent=Os02t0788133-00
Chr02	irgsp1_rep	three_prime_UTR	33490232	33490577	.	-	.	Parent=Os02t0788133-00
Chr02	irgsp1_rep	mRNA	33491615	33492869	.	+	.	ID=Os02t0788300-00;Name=Os02t0788300-00;Locus_id=Os02g0788300;Note=Similar to Eukaryotic translation initiation factor 3 subunit G.;Transcript_evidence=AK370892 (DDBJ);ORF_evidence=A2XAE3 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677),Translation initiation factor 3%2C  subunit G (IPR017334),Eukaryotic translation initiation factor 3 subunit G%2C N terminal (IPR024675);TENOR=Os02t0788300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	33491615	33492011	.	+	0	Parent=Os02t0788300-00
Chr02	irgsp1_rep	CDS	33492379	33492869	.	+	2	Parent=Os02t0788300-00
Chr02	irgsp1_rep	mRNA	33493421	33495763	.	+	.	ID=Os02t0788400-01;Name=Os02t0788400-01;Locus_id=Os02g0788400;CGSNL Gene Symbol=EIF3G;CGSNL Gene Name=EUKARYOTIC INITIATION FACTOR 3G;Oryzabase Gene Symbol Synonym(s)=eIF-3g%2C OseIF3g%2C RBP-43;Oryzabase Gene Name Synonym(s)="eukaryotic translation initiation factor 3%2C subunit g"%2C RNA-binding RBP-43;Note=Similar to Eukaryotic translation initiation factor 3 subunit-like protein.;Transcript_evidence=AK103497 (DDBJ%2C Best hit),AK060351 (DDBJ%2C Best hit);ORF_evidence=B8AE20 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677),Translation initiation factor 3%2C  subunit G (IPR017334),Eukaryotic translation initiation factor 3 subunit G%2C N terminal (IPR024675);NIAS_FLcDNA=J033131A11,001-008-F12;Oryzabase=21028;Expression=AK103497;TENOR=Os02t0788400-01;KEGG=Os02t0788400-01
Chr02	irgsp1_rep	five_prime_UTR	33493421	33493529	.	+	.	Parent=Os02t0788400-01
Chr02	irgsp1_rep	CDS	33493530	33493866	.	+	0	Parent=Os02t0788400-01
Chr02	irgsp1_rep	CDS	33495057	33495589	.	+	2	Parent=Os02t0788400-01
Chr02	irgsp1_rep	three_prime_UTR	33495590	33495763	.	+	.	Parent=Os02t0788400-01
Chr02	irgsp1_rep	mRNA	33496068	33498162	.	-	.	ID=Os02t0788500-01;Name=Os02t0788500-01;Locus_id=Os02g0788500;Note=Similar to DNA binding / nuclease.;Transcript_evidence=AK104117 (DDBJ%2C Best hit),AK061452 (DDBJ%2C Best hit),AK104526 (DDBJ%2C Best hit);ORF_evidence=NP_566347.1 (RefSeq);GO=Biological Process: nucleotide-excision repair (GO:0006289),Biological Process: protein phosphorylation (GO:0006468),Molecular Function: DNA binding (GO:0003677),Molecular Function: nuclease activity (GO:0004518),Molecular Function: calmodulin-dependent protein kinase activity (GO:0004683),Molecular Function: calmodulin binding (GO:0005516);InterPro=UvrB/UvrC protein (IPR001943),Calcium/calmodulin-dependent protein kinase II%2C association-domain (IPR013543);NIAS_FLcDNA=006-203-A04,006-307-F07,006-303-H04;Expression=AK104117;TENOR=Os02t0788500-01;KEGG=Os02t0788500-01
Chr02	irgsp1_rep	five_prime_UTR	33498143	33498162	.	-	.	Parent=Os02t0788500-01
Chr02	irgsp1_rep	CDS	33498006	33498142	.	-	0	Parent=Os02t0788500-01
Chr02	irgsp1_rep	CDS	33496308	33496893	.	-	1	Parent=Os02t0788500-01
Chr02	irgsp1_rep	three_prime_UTR	33496068	33496307	.	-	.	Parent=Os02t0788500-01
Chr02	irgsp1_rep	mRNA	33502431	33505888	.	-	.	ID=Os02t0788600-01;Name=Os02t0788600-01;Locus_id=Os02g0788600;Note=Hypothetical conserved gene.;Transcript_evidence=AK289239 (DDBJ%2C Best hit);ORF_evidence=NP_001048349.1 (RefSeq);InterPro=Double Clp-N motif (IPR023150);NIAS_FLcDNA=J100075G04;TENOR=Os02t0788600-01;KEGG=Os02t0788600-01
Chr02	irgsp1_rep	five_prime_UTR	33505763	33505888	.	-	.	Parent=Os02t0788600-01
Chr02	irgsp1_rep	CDS	33504585	33505762	.	-	0	Parent=Os02t0788600-01
Chr02	irgsp1_rep	CDS	33504234	33504483	.	-	1	Parent=Os02t0788600-01
Chr02	irgsp1_rep	CDS	33503529	33504111	.	-	0	Parent=Os02t0788600-01
Chr02	irgsp1_rep	CDS	33502642	33502862	.	-	2	Parent=Os02t0788600-01
Chr02	irgsp1_rep	three_prime_UTR	33502431	33502641	.	-	.	Parent=Os02t0788600-01
Chr02	irgsp1_rep	mRNA	33505386	33505754	.	+	.	ID=Os02t0788700-00;Name=Os02t0788700-00;Locus_id=Os02g0788700;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os02t0788700-00
Chr02	irgsp1_rep	CDS	33505386	33505754	.	+	0	Parent=Os02t0788700-00
Chr02	irgsp1_rep	mRNA	33512112	33517881	.	-	.	ID=Os02t0788800-01;Name=Os02t0788800-01;Locus_id=Os02g0788800;Oryzabase Gene Symbol Synonym(s)=OsATL9;Oryzabase Gene Name Synonym(s)=amino acid transporter-like 9;Note=Amino acid transporter%2C transmembrane domain containing protein.;Transcript_evidence=AK066747 (DDBJ%2C Best hit);ORF_evidence=XP_002881760.1 (RefSeq);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=J013088E05;Oryzabase=18526;Expression=AK066747;TENOR=Os02t0788800-01;KEGG=Os02t0788800-01
Chr02	irgsp1_rep	five_prime_UTR	33517718	33517881	.	-	.	Parent=Os02t0788800-01
Chr02	irgsp1_rep	CDS	33517494	33517717	.	-	0	Parent=Os02t0788800-01
Chr02	irgsp1_rep	CDS	33515932	33516212	.	-	1	Parent=Os02t0788800-01
Chr02	irgsp1_rep	CDS	33515634	33515848	.	-	2	Parent=Os02t0788800-01
Chr02	irgsp1_rep	CDS	33515002	33515025	.	-	0	Parent=Os02t0788800-01
Chr02	irgsp1_rep	CDS	33514365	33514592	.	-	0	Parent=Os02t0788800-01
Chr02	irgsp1_rep	three_prime_UTR	33514092	33514364	.	-	.	Parent=Os02t0788800-01
Chr02	irgsp1_rep	three_prime_UTR	33513872	33514007	.	-	.	Parent=Os02t0788800-01
Chr02	irgsp1_rep	three_prime_UTR	33513769	33513788	.	-	.	Parent=Os02t0788800-01
Chr02	irgsp1_rep	three_prime_UTR	33513480	33513625	.	-	.	Parent=Os02t0788800-01
Chr02	irgsp1_rep	three_prime_UTR	33512700	33512743	.	-	.	Parent=Os02t0788800-01
Chr02	irgsp1_rep	three_prime_UTR	33512543	33512605	.	-	.	Parent=Os02t0788800-01
Chr02	irgsp1_rep	three_prime_UTR	33512112	33512433	.	-	.	Parent=Os02t0788800-01
Chr02	irgsp1_rep	mRNA	33511971	33514531	.	-	.	ID=Os02t0788800-02;Name=Os02t0788800-02;Locus_id=Os02g0788800;Oryzabase Gene Symbol Synonym(s)=OsATL9;Oryzabase Gene Name Synonym(s)=amino acid transporter-like 9;Note=Similar to amino acid transporter family protein.;Transcript_evidence=AK060825 (DDBJ%2C Best hit);ORF_evidence=NP_030664.1 (RefSeq);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=001-034-B05;Oryzabase=18526;Expression=AK060825;TENOR=Os02t0788800-02;KEGG=Os02t0788800-02
Chr02	irgsp1_rep	five_prime_UTR	33514530	33514531	.	-	.	Parent=Os02t0788800-02
Chr02	irgsp1_rep	CDS	33514412	33514529	.	-	0	Parent=Os02t0788800-02
Chr02	irgsp1_rep	CDS	33514092	33514311	.	-	2	Parent=Os02t0788800-02
Chr02	irgsp1_rep	CDS	33513872	33514007	.	-	1	Parent=Os02t0788800-02
Chr02	irgsp1_rep	CDS	33513769	33513788	.	-	0	Parent=Os02t0788800-02
Chr02	irgsp1_rep	CDS	33513480	33513625	.	-	1	Parent=Os02t0788800-02
Chr02	irgsp1_rep	CDS	33512700	33512743	.	-	2	Parent=Os02t0788800-02
Chr02	irgsp1_rep	CDS	33512543	33512605	.	-	0	Parent=Os02t0788800-02
Chr02	irgsp1_rep	CDS	33512341	33512433	.	-	0	Parent=Os02t0788800-02
Chr02	irgsp1_rep	three_prime_UTR	33511971	33512340	.	-	.	Parent=Os02t0788800-02
Chr02	irgsp1_rep	mRNA	33530587	33535938	.	-	.	ID=Os02t0789100-01;Name=Os02t0789100-01;Locus_id=Os02g0789100;CGSNL Gene Symbol=CNGC5;CGSNL Gene Name=CYCLIC NUCLEOTIDE GATED CHANNEL 5;Oryzabase Gene Symbol Synonym(s)=OsCNGC5%2C OsCNGC10;Oryzabase Gene Name Synonym(s)=Cyclic nucleotide gated channel 5%2C Cyclic nucleotide-gated ion channel 10;Note=Similar to predicted protein.;Transcript_evidence=AK243602 (DDBJ%2C Best hit);ORF_evidence=NP_194765.2 (RefSeq);GO=Biological Process: ion transport (GO:0006811),Biological Process: potassium ion transport (GO:0006813),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: ion channel activity (GO:0005216),Molecular Function: voltage-gated potassium channel activity (GO:0005249);InterPro=Cyclic nucleotide-binding domain (IPR000595),Potassium channel%2C voltage-dependent%2C EAG/ELK/ERG (IPR003938),Ion transport (IPR005821),RmlC-like jelly roll fold (IPR014710),Cyclic nucleotide-binding-like (IPR018490);NIAS_FLcDNA=J100084P18;Oryzabase=15478;TENOR=Os02t0789100-01;KEGG=Os02t0789100-01
Chr02	irgsp1_rep	five_prime_UTR	33535703	33535938	.	-	.	Parent=Os02t0789100-01
Chr02	irgsp1_rep	CDS	33535644	33535702	.	-	0	Parent=Os02t0789100-01
Chr02	irgsp1_rep	CDS	33534591	33535089	.	-	1	Parent=Os02t0789100-01
Chr02	irgsp1_rep	CDS	33533510	33533722	.	-	0	Parent=Os02t0789100-01
Chr02	irgsp1_rep	CDS	33533074	33533360	.	-	0	Parent=Os02t0789100-01
Chr02	irgsp1_rep	CDS	33532713	33532824	.	-	1	Parent=Os02t0789100-01
Chr02	irgsp1_rep	CDS	33532392	33532628	.	-	0	Parent=Os02t0789100-01
Chr02	irgsp1_rep	CDS	33531083	33531754	.	-	0	Parent=Os02t0789100-01
Chr02	irgsp1_rep	three_prime_UTR	33530587	33531082	.	-	.	Parent=Os02t0789100-01
Chr02	irgsp1_rep	mRNA	33530786	33535705	.	+	.	ID=Os02t0789150-00;Name=Os02t0789150-00;Locus_id=Os02g0789150;Note=Hypothetical protein.;Transcript_evidence=tplb0048d05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0789150-00
Chr02	irgsp1_rep	five_prime_UTR	33530786	33531455	.	+	.	Parent=Os02t0789150-00
Chr02	irgsp1_rep	CDS	33531456	33531728	.	+	0	Parent=Os02t0789150-00
Chr02	irgsp1_rep	three_prime_UTR	33531729	33531764	.	+	.	Parent=Os02t0789150-00
Chr02	irgsp1_rep	three_prime_UTR	33532404	33532628	.	+	.	Parent=Os02t0789150-00
Chr02	irgsp1_rep	three_prime_UTR	33532713	33532826	.	+	.	Parent=Os02t0789150-00
Chr02	irgsp1_rep	three_prime_UTR	33533079	33533357	.	+	.	Parent=Os02t0789150-00
Chr02	irgsp1_rep	three_prime_UTR	33533507	33533726	.	+	.	Parent=Os02t0789150-00
Chr02	irgsp1_rep	three_prime_UTR	33534595	33535091	.	+	.	Parent=Os02t0789150-00
Chr02	irgsp1_rep	three_prime_UTR	33535638	33535705	.	+	.	Parent=Os02t0789150-00
Chr02	irgsp1_rep	mRNA	33541862	33546534	.	-	.	ID=Os02t0789400-01;Name=Os02t0789400-01;Locus_id=Os02g0789400;CGSNL Gene Symbol=RSZP21B;Oryzabase Gene Symbol Synonym(s)=Os-RSZ21%2C OsRSZ21%2C RSZ21%2C Os-RSZp21b%2C OsRSZp21b;Oryzabase Gene Name Synonym(s)=RS domain with zinc knuckle protein 21B%2C RSZ subfamily protein 21B;Note=Similar to 9G8-like SR protein (RSZp22 splicing factor).;Transcript_evidence=AK073359 (DDBJ%2C Best hit);ORF_evidence=B6SJI7 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA recognition motif domain (IPR000504),Zinc finger%2C CCHC-type (IPR001878),Nucleotide-binding%2C alpha-beta plait (IPR012677),Zinc finger%2C CCHC retroviral-type (IPR013084);NIAS_FLcDNA=J033027A21;Oryzabase=22736;Expression=AK073359;TENOR=Os02t0789400-01;KEGG=Os02t0789400-01
Chr02	irgsp1_rep	five_prime_UTR	33546385	33546534	.	-	.	Parent=Os02t0789400-01
Chr02	irgsp1_rep	five_prime_UTR	33545452	33545464	.	-	.	Parent=Os02t0789400-01
Chr02	irgsp1_rep	CDS	33545363	33545451	.	-	0	Parent=Os02t0789400-01
Chr02	irgsp1_rep	CDS	33544793	33544881	.	-	1	Parent=Os02t0789400-01
Chr02	irgsp1_rep	CDS	33543346	33543577	.	-	2	Parent=Os02t0789400-01
Chr02	irgsp1_rep	CDS	33542965	33543075	.	-	1	Parent=Os02t0789400-01
Chr02	irgsp1_rep	CDS	33542824	33542860	.	-	1	Parent=Os02t0789400-01
Chr02	irgsp1_rep	three_prime_UTR	33542735	33542823	.	-	.	Parent=Os02t0789400-01
Chr02	irgsp1_rep	three_prime_UTR	33542424	33542620	.	-	.	Parent=Os02t0789400-01
Chr02	irgsp1_rep	three_prime_UTR	33541862	33542247	.	-	.	Parent=Os02t0789400-01
Chr02	irgsp1_rep	mRNA	33542632	33546529	.	-	.	ID=Os02t0789400-02;Name=Os02t0789400-02;Locus_id=Os02g0789400;CGSNL Gene Symbol=RSZP21B;Oryzabase Gene Symbol Synonym(s)=Os-RSZ21%2C OsRSZ21%2C RSZ21%2C Os-RSZp21b%2C OsRSZp21b;Oryzabase Gene Name Synonym(s)=RS domain with zinc knuckle protein 21B%2C RSZ subfamily protein 21B;Note=Similar to 9G8-like SR protein (RSZp22 splicing factor).;Transcript_evidence=AK073210 (DDBJ%2C Best hit);ORF_evidence=B6SJI7 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA recognition motif domain (IPR000504),Zinc finger%2C CCHC-type (IPR001878),Nucleotide-binding%2C alpha-beta plait (IPR012677),Zinc finger%2C CCHC retroviral-type (IPR013084);NIAS_FLcDNA=J033005C22;Oryzabase=22736;Expression=AK073210;TENOR=Os02t0789400-02;KEGG=Os02t0789400-02
Chr02	irgsp1_rep	five_prime_UTR	33546385	33546529	.	-	.	Parent=Os02t0789400-02
Chr02	irgsp1_rep	five_prime_UTR	33545452	33545464	.	-	.	Parent=Os02t0789400-02
Chr02	irgsp1_rep	CDS	33545363	33545451	.	-	0	Parent=Os02t0789400-02
Chr02	irgsp1_rep	CDS	33544793	33544881	.	-	1	Parent=Os02t0789400-02
Chr02	irgsp1_rep	CDS	33543346	33543577	.	-	2	Parent=Os02t0789400-02
Chr02	irgsp1_rep	CDS	33542965	33543075	.	-	1	Parent=Os02t0789400-02
Chr02	irgsp1_rep	CDS	33542824	33542860	.	-	1	Parent=Os02t0789400-02
Chr02	irgsp1_rep	three_prime_UTR	33542632	33542823	.	-	.	Parent=Os02t0789400-02
Chr02	irgsp1_rep	mRNA	33547296	33550402	.	+	.	ID=Os02t0789600-01;Name=Os02t0789600-01;Locus_id=Os02g0789600;Note=Similar to DEM2.;Transcript_evidence=AK112100 (DDBJ%2C Best hit),AK101046 (DDBJ%2C Best hit);ORF_evidence=NP_001152277.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Vacuolar import/degradation%2C Vid27-related (IPR013863),WD40/YVTN repeat-like-containing domain (IPR015943);NIAS_FLcDNA=002-108-F01,J033005J09;TENOR=Os02t0789600-01
Chr02	irgsp1_rep	five_prime_UTR	33547296	33547372	.	+	.	Parent=Os02t0789600-01
Chr02	irgsp1_rep	CDS	33547373	33548938	.	+	0	Parent=Os02t0789600-01
Chr02	irgsp1_rep	CDS	33549824	33550111	.	+	0	Parent=Os02t0789600-01
Chr02	irgsp1_rep	three_prime_UTR	33550112	33550402	.	+	.	Parent=Os02t0789600-01
Chr02	irgsp1_rep	mRNA	33552726	33556757	.	+	.	ID=Os02t0789700-01;Name=Os02t0789700-01;Locus_id=Os02g0789700;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK070029 (DDBJ%2C Best hit);ORF_evidence=A2ZGN6 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=Nucleotide-binding%2C alpha-beta plait (IPR012677),Protein of unknown function DUF3355 (IPR021790);NIAS_FLcDNA=J023038I03;TENOR=Os02t0789700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	33552726	33552858	.	+	.	Parent=Os02t0789700-01
Chr02	irgsp1_rep	five_prime_UTR	33553232	33553702	.	+	.	Parent=Os02t0789700-01
Chr02	irgsp1_rep	CDS	33553703	33554995	.	+	0	Parent=Os02t0789700-01
Chr02	irgsp1_rep	three_prime_UTR	33554996	33556757	.	+	.	Parent=Os02t0789700-01
Chr02	irgsp1_rep	mRNA	33569391	33573131	.	+	.	ID=Os02t0790500-01;Name=Os02t0790500-01;Locus_id=Os02g0790500;CGSNL Gene Symbol=TPS5;CGSNL Gene Name=TREHALOSE-6-PHOSPHATE SYNTHASE 5;Oryzabase Gene Symbol Synonym(s)=OsTPS5;Note=Hypothetical protein.;Transcript_evidence=AK065160 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013002C03;Oryzabase=9044;TENOR=Os02t0790500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	33569391	33569616	.	+	0	Parent=Os02t0790500-01
Chr02	irgsp1_rep	CDS	33572802	33572956	.	+	2	Parent=Os02t0790500-01
Chr02	irgsp1_rep	three_prime_UTR	33572957	33573131	.	+	.	Parent=Os02t0790500-01
Chr02	irgsp1_rep	mRNA	33570286	33573131	.	+	.	ID=Os02t0790500-02;Name=Os02t0790500-02;Locus_id=Os02g0790500;CGSNL Gene Symbol=TPS5;CGSNL Gene Name=TREHALOSE-6-PHOSPHATE SYNTHASE 5;Oryzabase Gene Symbol Synonym(s)=OsTPS5;Note=Similar to Trehalose-6-phosphate synthase.;Transcript_evidence=AK100050 (DDBJ%2C Best hit);ORF_evidence=B6T0F0 (UniProt);GO=Biological Process: trehalose biosynthetic process (GO:0005992),Molecular Function: catalytic activity (GO:0003824);InterPro=Glycosyl transferase%2C family 20 (IPR001830),Trehalose-phosphatase (IPR003337),HAD-like domain (IPR023214);NIAS_FLcDNA=J013155M03;Oryzabase=9044;TENOR=Os02t0790500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	33570286	33571505	.	+	0	Parent=Os02t0790500-02
Chr02	irgsp1_rep	CDS	33571864	33572170	.	+	1	Parent=Os02t0790500-02
Chr02	irgsp1_rep	three_prime_UTR	33572171	33573131	.	+	.	Parent=Os02t0790500-02
Chr02	irgsp1_rep	mRNA	33572143	33573165	.	+	.	ID=Os02t0790500-03;Name=Os02t0790500-03;Locus_id=Os02g0790500;CGSNL Gene Symbol=TPS5;CGSNL Gene Name=TREHALOSE-6-PHOSPHATE SYNTHASE 5;Oryzabase Gene Symbol Synonym(s)=OsTPS5;Note=Similar to trehalose-6-phosphate synthase.;Transcript_evidence=AK066691 (DDBJ%2C Best hit);ORF_evidence=B6T0F0 (UniProt);GO=Biological Process: trehalose biosynthetic process (GO:0005992),Molecular Function: catalytic activity (GO:0003824);InterPro=Trehalose-phosphatase (IPR003337),HAD-like domain (IPR023214);NIAS_FLcDNA=J013074E05;Oryzabase=9044;Expression=AK066691;TENOR=Os02t0790500-03;KEGG=Os02t0790500-03
Chr02	irgsp1_rep	five_prime_UTR	33572143	33572531	.	+	.	Parent=Os02t0790500-03
Chr02	irgsp1_rep	CDS	33572532	33572861	.	+	0	Parent=Os02t0790500-03
Chr02	irgsp1_rep	three_prime_UTR	33572862	33573165	.	+	.	Parent=Os02t0790500-03
Chr02	irgsp1_rep	mRNA	33579498	33581249	.	-	.	ID=Os02t0790600-01;Name=Os02t0790600-01;Locus_id=Os02g0790600;Note=Similar to RING-H2 finger protein ATL1R (RING-H2 finger protein ATL8).;Transcript_evidence=AK064699 (DDBJ%2C Best hit);ORF_evidence=NP_001149313.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=002-116-G03;Expression=AK064699;TENOR=Os02t0790600-01;KEGG=Os02t0790600-01
Chr02	irgsp1_rep	five_prime_UTR	33581069	33581249	.	-	.	Parent=Os02t0790600-01
Chr02	irgsp1_rep	CDS	33579782	33581068	.	-	0	Parent=Os02t0790600-01
Chr02	irgsp1_rep	three_prime_UTR	33579498	33579781	.	-	.	Parent=Os02t0790600-01
Chr02	irgsp1_rep	mRNA	33579602	33581210	.	-	.	ID=Os02t0790600-02;Name=Os02t0790600-02;Locus_id=Os02g0790600;Note=Similar to RING-H2 finger protein ATL1R (RING-H2 finger protein ATL8).;Transcript_evidence=AK101056 (DDBJ%2C Best hit);ORF_evidence=NP_001149313.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J033021A14;Expression=AK101056;TENOR=Os02t0790600-02;KEGG=Os02t0790600-02
Chr02	irgsp1_rep	five_prime_UTR	33581069	33581210	.	-	.	Parent=Os02t0790600-02
Chr02	irgsp1_rep	CDS	33579782	33581068	.	-	0	Parent=Os02t0790600-02
Chr02	irgsp1_rep	three_prime_UTR	33579602	33579781	.	-	.	Parent=Os02t0790600-02
Chr02	irgsp1_rep	mRNA	33595810	33599442	.	+	.	ID=Os02t0791200-01;Name=Os02t0791200-01;Locus_id=Os02g0791200;Oryzabase Gene Symbol Synonym(s)=XBOS32;Note=Ankyrin domain containing protein.;Transcript_evidence=AK120632 (DDBJ%2C Best hit);ORF_evidence=C7EC57 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Ankyrin repeat (IPR002110),Zinc finger%2C RING-type%2C conserved site (IPR017907),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J013153H21;Oryzabase=11146;Expression=AK120632;TENOR=Os02t0791200-01;KEGG=Os02t0791200-01
Chr02	irgsp1_rep	five_prime_UTR	33595810	33596129	.	+	.	Parent=Os02t0791200-01
Chr02	irgsp1_rep	five_prime_UTR	33596196	33596289	.	+	.	Parent=Os02t0791200-01
Chr02	irgsp1_rep	CDS	33596290	33596589	.	+	0	Parent=Os02t0791200-01
Chr02	irgsp1_rep	CDS	33596691	33596750	.	+	0	Parent=Os02t0791200-01
Chr02	irgsp1_rep	CDS	33596839	33596910	.	+	0	Parent=Os02t0791200-01
Chr02	irgsp1_rep	CDS	33596991	33597166	.	+	0	Parent=Os02t0791200-01
Chr02	irgsp1_rep	CDS	33597256	33597416	.	+	1	Parent=Os02t0791200-01
Chr02	irgsp1_rep	CDS	33597629	33597687	.	+	2	Parent=Os02t0791200-01
Chr02	irgsp1_rep	CDS	33597776	33597822	.	+	0	Parent=Os02t0791200-01
Chr02	irgsp1_rep	CDS	33597956	33598096	.	+	1	Parent=Os02t0791200-01
Chr02	irgsp1_rep	CDS	33598345	33598436	.	+	1	Parent=Os02t0791200-01
Chr02	irgsp1_rep	CDS	33598734	33599221	.	+	2	Parent=Os02t0791200-01
Chr02	irgsp1_rep	three_prime_UTR	33599222	33599442	.	+	.	Parent=Os02t0791200-01
Chr02	irgsp1_rep	mRNA	33604348	33605999	.	+	.	ID=Os02t0791300-01;Name=Os02t0791300-01;Locus_id=Os02g0791300;Oryzabase Gene Symbol Synonym(s)=OsbHLH168%2C bHLH168;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 168;Note=Hypothetical conserved gene.;Transcript_evidence=AK243186 (DDBJ%2C Best hit);ORF_evidence=NP_001173178.1 (RefSeq);NIAS_FLcDNA=J100039D05;Oryzabase=22844;TENOR=Os02t0791300-01;KEGG=Os02t0791300-01
Chr02	irgsp1_rep	five_prime_UTR	33604348	33604878	.	+	.	Parent=Os02t0791300-01
Chr02	irgsp1_rep	CDS	33604879	33605482	.	+	0	Parent=Os02t0791300-01
Chr02	irgsp1_rep	CDS	33605605	33605612	.	+	2	Parent=Os02t0791300-01
Chr02	irgsp1_rep	three_prime_UTR	33605613	33605999	.	+	.	Parent=Os02t0791300-01
Chr02	irgsp1_rep	mRNA	33607645	33609707	.	-	.	ID=Os02t0791400-01;Name=Os02t0791400-01;Locus_id=Os02g0791400;Note=CytoChrome c oxidase%2C subunit VIb domain containing protein.;Transcript_evidence=AK062787 (DDBJ%2C Best hit);ORF_evidence=B6UFG8 (UniProt);GO=Cellular Component: mitochondrion (GO:0005739),Molecular Function: cytoChrome-c oxidase activity (GO:0004129);InterPro=CytoChrome c oxidase%2C subunit VIb (IPR003213);NIAS_FLcDNA=001-107-B10;Expression=AK062787;TENOR=Os02t0791400-01;KEGG=Os02t0791400-01 (EC:1.9.3.1)
Chr02	irgsp1_rep	five_prime_UTR	33609633	33609707	.	-	.	Parent=Os02t0791400-01
Chr02	irgsp1_rep	CDS	33609597	33609632	.	-	0	Parent=Os02t0791400-01
Chr02	irgsp1_rep	CDS	33609279	33609368	.	-	0	Parent=Os02t0791400-01
Chr02	irgsp1_rep	CDS	33608989	33609069	.	-	0	Parent=Os02t0791400-01
Chr02	irgsp1_rep	CDS	33608034	33608087	.	-	0	Parent=Os02t0791400-01
Chr02	irgsp1_rep	three_prime_UTR	33607645	33608033	.	-	.	Parent=Os02t0791400-01
Chr02	irgsp1_rep	mRNA	33618707	33619898	.	-	.	ID=Os02t0791450-00;Name=Os02t0791450-00;Locus_id=Os02g0791450;Note=Hypothetical protein.;Transcript_evidence=tplb0035b24 (Wheat FLcDNA);ORF_evidence=longestORF;Oryzabase=23057;TENOR=Os02t0791450-00
Chr02	irgsp1_rep	CDS	33618708	33619898	.	-	0	Parent=Os02t0791450-00
Chr02	irgsp1_rep	three_prime_UTR	33618707	33618707	.	-	.	Parent=Os02t0791450-00
Chr02	irgsp1_rep	mRNA	33618590	33620085	.	+	.	ID=Os02t0791500-01;Name=Os02t0791500-01;Locus_id=Os02g0791500;Oryzabase Gene Symbol Synonym(s)=OsUGlcAE3;Oryzabase Gene Name Synonym(s)=UDP-glucuronic acid 4-epimerase 3;Note=Similar to Nucleotide sugar epimerase-like protein (UDP-D-glucuronate 4- epimerase) (EC 5.1.3.6).;Transcript_evidence=AK071654 (DDBJ%2C Best hit);ORF_evidence=Q304Y2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: racemase and epimerase activity%2C acting on carbohydrates and derivatives (GO:0016857),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),Nucleotide sugar epimerase (IPR008089),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023103L05;Oryzabase=15784;Expression=AK071654;TENOR=Os02t0791500-01;KEGG=Os02t0791500-01 (EC:5.1.3.6)
Chr02	irgsp1_rep	five_prime_UTR	33618590	33618614	.	+	.	Parent=Os02t0791500-01
Chr02	irgsp1_rep	CDS	33618615	33619928	.	+	0	Parent=Os02t0791500-01
Chr02	irgsp1_rep	three_prime_UTR	33619929	33620085	.	+	.	Parent=Os02t0791500-01
Chr02	irgsp1_rep	mRNA	33619236	33620330	.	+	.	ID=Os02t0791500-02;Name=Os02t0791500-02;Locus_id=Os02g0791500;Oryzabase Gene Symbol Synonym(s)=OsUGlcAE3;Oryzabase Gene Name Synonym(s)=UDP-glucuronic acid 4-epimerase 3;Note=Similar to UDP-glucuronic acid 4-epimerase.;Transcript_evidence=AK069596 (DDBJ%2C Best hit);ORF_evidence=Q304Y2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: racemase and epimerase activity%2C acting on carbohydrates and derivatives (GO:0016857),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),Nucleotide sugar epimerase (IPR008089),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023024B07;Oryzabase=15784;Expression=AK069596;TENOR=Os02t0791500-02;KEGG=Os02t0791500-02 (EC:5.1.3.6)
Chr02	irgsp1_rep	CDS	33619236	33619928	.	+	0	Parent=Os02t0791500-02
Chr02	irgsp1_rep	three_prime_UTR	33619929	33620330	.	+	.	Parent=Os02t0791500-02
Chr02	irgsp1_rep	mRNA	33622947	33623019	.	-	.	ID=Os02t0791650-00;Name=Os02t0791650-00;Locus_id=Os02g0791650;Note=Non-protein coding transcript.;Transcript_evidence=X06283 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0791650-00
Chr02	irgsp1_rep	exon	33622947	33623019	.	-	.	Parent=Os02t0791650-00
Chr02	irgsp1_rep	mRNA	33623986	33629332	.	+	.	ID=Os02t0791700-00;Name=Os02t0791700-00;Locus_id=Os02g0791700;Note=Similar to STE20/SPS1-related proline-alanine-rich protein kinase.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001151604.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os02t0791700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	33623986	33624195	.	+	0	Parent=Os02t0791700-00
Chr02	irgsp1_rep	CDS	33624596	33624850	.	+	0	Parent=Os02t0791700-00
Chr02	irgsp1_rep	CDS	33624986	33625110	.	+	0	Parent=Os02t0791700-00
Chr02	irgsp1_rep	CDS	33625206	33625250	.	+	1	Parent=Os02t0791700-00
Chr02	irgsp1_rep	CDS	33625334	33625415	.	+	1	Parent=Os02t0791700-00
Chr02	irgsp1_rep	CDS	33625515	33625583	.	+	0	Parent=Os02t0791700-00
Chr02	irgsp1_rep	CDS	33625678	33625848	.	+	0	Parent=Os02t0791700-00
Chr02	irgsp1_rep	CDS	33625938	33626003	.	+	0	Parent=Os02t0791700-00
Chr02	irgsp1_rep	CDS	33626594	33626662	.	+	0	Parent=Os02t0791700-00
Chr02	irgsp1_rep	CDS	33626736	33626873	.	+	0	Parent=Os02t0791700-00
Chr02	irgsp1_rep	CDS	33627188	33627261	.	+	0	Parent=Os02t0791700-00
Chr02	irgsp1_rep	CDS	33627653	33627762	.	+	1	Parent=Os02t0791700-00
Chr02	irgsp1_rep	CDS	33627935	33628032	.	+	2	Parent=Os02t0791700-00
Chr02	irgsp1_rep	CDS	33628102	33628140	.	+	0	Parent=Os02t0791700-00
Chr02	irgsp1_rep	CDS	33628278	33628397	.	+	0	Parent=Os02t0791700-00
Chr02	irgsp1_rep	CDS	33628491	33628616	.	+	0	Parent=Os02t0791700-00
Chr02	irgsp1_rep	CDS	33628828	33628889	.	+	0	Parent=Os02t0791700-00
Chr02	irgsp1_rep	CDS	33628974	33629025	.	+	1	Parent=Os02t0791700-00
Chr02	irgsp1_rep	CDS	33629213	33629332	.	+	0	Parent=Os02t0791700-00
Chr02	irgsp1_rep	mRNA	33629638	33633614	.	-	.	ID=Os02t0791800-01;Name=Os02t0791800-01;Locus_id=Os02g0791800;CGSNL Gene Symbol=ATG18A;CGSNL Gene Name=AUTOPHAGY ASSOCIATED GENE 18A;Oryzabase Gene Symbol Synonym(s)=OsATG18a%2C OsWD40-56;Oryzabase Gene Name Synonym(s)=autophagy 18a;Note=WD-40 repeat containing protein.;Transcript_evidence=AK099697 (DDBJ%2C Best hit);ORF_evidence=NP_194780.2 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40 repeat%2C subgroup (IPR019781);NIAS_FLcDNA=J013074J03;Oryzabase=9660;Expression=AK099697;TENOR=Os02t0791800-01;KEGG=Os02t0791800-01
Chr02	irgsp1_rep	five_prime_UTR	33632666	33633614	.	-	.	Parent=Os02t0791800-01
Chr02	irgsp1_rep	CDS	33632598	33632665	.	-	0	Parent=Os02t0791800-01
Chr02	irgsp1_rep	CDS	33632384	33632457	.	-	1	Parent=Os02t0791800-01
Chr02	irgsp1_rep	CDS	33631951	33632024	.	-	2	Parent=Os02t0791800-01
Chr02	irgsp1_rep	CDS	33631719	33631828	.	-	0	Parent=Os02t0791800-01
Chr02	irgsp1_rep	CDS	33631445	33631536	.	-	1	Parent=Os02t0791800-01
Chr02	irgsp1_rep	CDS	33631206	33631318	.	-	2	Parent=Os02t0791800-01
Chr02	irgsp1_rep	CDS	33630695	33630814	.	-	0	Parent=Os02t0791800-01
Chr02	irgsp1_rep	CDS	33630469	33630614	.	-	0	Parent=Os02t0791800-01
Chr02	irgsp1_rep	CDS	33630283	33630393	.	-	1	Parent=Os02t0791800-01
Chr02	irgsp1_rep	CDS	33630147	33630206	.	-	1	Parent=Os02t0791800-01
Chr02	irgsp1_rep	CDS	33629885	33630041	.	-	1	Parent=Os02t0791800-01
Chr02	irgsp1_rep	three_prime_UTR	33629638	33629884	.	-	.	Parent=Os02t0791800-01
Chr02	irgsp1_rep	mRNA	33629573	33632705	.	-	.	ID=Os02t0791800-02;Name=Os02t0791800-02;Locus_id=Os02g0791800;CGSNL Gene Symbol=ATG18A;CGSNL Gene Name=AUTOPHAGY ASSOCIATED GENE 18A;Oryzabase Gene Symbol Synonym(s)=OsATG18a%2C OsWD40-56;Oryzabase Gene Name Synonym(s)=autophagy 18a;Note=WD-40 repeat containing protein.;Transcript_evidence=AK066282 (DDBJ%2C Best hit);ORF_evidence=NP_194780.2 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40 repeat%2C subgroup (IPR019781);NIAS_FLcDNA=J013064O20;Oryzabase=9660;Expression=AK066282;TENOR=Os02t0791800-02;KEGG=Os02t0791800-02
Chr02	irgsp1_rep	five_prime_UTR	33632666	33632705	.	-	.	Parent=Os02t0791800-02
Chr02	irgsp1_rep	CDS	33632598	33632665	.	-	0	Parent=Os02t0791800-02
Chr02	irgsp1_rep	CDS	33632384	33632457	.	-	1	Parent=Os02t0791800-02
Chr02	irgsp1_rep	CDS	33631951	33632024	.	-	2	Parent=Os02t0791800-02
Chr02	irgsp1_rep	CDS	33631719	33631828	.	-	0	Parent=Os02t0791800-02
Chr02	irgsp1_rep	CDS	33631445	33631536	.	-	1	Parent=Os02t0791800-02
Chr02	irgsp1_rep	CDS	33631206	33631318	.	-	2	Parent=Os02t0791800-02
Chr02	irgsp1_rep	CDS	33630695	33630814	.	-	0	Parent=Os02t0791800-02
Chr02	irgsp1_rep	CDS	33630469	33630614	.	-	0	Parent=Os02t0791800-02
Chr02	irgsp1_rep	CDS	33630283	33630393	.	-	1	Parent=Os02t0791800-02
Chr02	irgsp1_rep	CDS	33630147	33630206	.	-	1	Parent=Os02t0791800-02
Chr02	irgsp1_rep	CDS	33629885	33630041	.	-	1	Parent=Os02t0791800-02
Chr02	irgsp1_rep	three_prime_UTR	33629573	33629884	.	-	.	Parent=Os02t0791800-02
Chr02	irgsp1_rep	mRNA	33634958	33635482	.	+	.	ID=Os02t0792000-01;Name=Os02t0792000-01;Locus_id=Os02g0792000;Note=Hypothetical protein.;Transcript_evidence=AK109282 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-188-B11;Expression=AK109282;TENOR=Os02t0792000-01;KEGG=Os02t0792000-01
Chr02	irgsp1_rep	five_prime_UTR	33634958	33635106	.	+	.	Parent=Os02t0792000-01
Chr02	irgsp1_rep	CDS	33635107	33635406	.	+	0	Parent=Os02t0792000-01
Chr02	irgsp1_rep	three_prime_UTR	33635407	33635482	.	+	.	Parent=Os02t0792000-01
Chr02	irgsp1_rep	mRNA	33648500	33651254	.	-	.	ID=Os02t0792100-01;Name=Os02t0792100-01;Locus_id=Os02g0792100;Note=Conserved hypothetical protein.;Transcript_evidence=AK107176 (DDBJ%2C Best hit);ORF_evidence=Q6AT77 (UniProt);NIAS_FLcDNA=002-124-G09;TENOR=Os02t0792100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	33651018	33651254	.	-	.	Parent=Os02t0792100-01
Chr02	irgsp1_rep	five_prime_UTR	33650803	33650884	.	-	.	Parent=Os02t0792100-01
Chr02	irgsp1_rep	five_prime_UTR	33650580	33650710	.	-	.	Parent=Os02t0792100-01
Chr02	irgsp1_rep	five_prime_UTR	33649073	33649394	.	-	.	Parent=Os02t0792100-01
Chr02	irgsp1_rep	CDS	33648944	33649072	.	-	0	Parent=Os02t0792100-01
Chr02	irgsp1_rep	three_prime_UTR	33648500	33648943	.	-	.	Parent=Os02t0792100-01
Chr02	irgsp1_rep	mRNA	33663535	33667409	.	+	.	ID=Os02t0792500-00;Name=Os02t0792500-00;Locus_id=Os02g0792500;Oryzabase Gene Symbol Synonym(s)=OsEnS-42;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 42;Note=Glucoamylase%2C putatuve domain containing protein.;Transcript_evidence=AK376502 (DDBJ);ORF_evidence=B9F3Z1 (UniProt);InterPro=Glucoamylase%2C putatuve (IPR004314);Oryzabase=18372;TENOR=Os02t0792500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	33663535	33663554	.	+	.	Parent=Os02t0792500-00
Chr02	irgsp1_rep	CDS	33663555	33663695	.	+	0	Parent=Os02t0792500-00
Chr02	irgsp1_rep	CDS	33663779	33663865	.	+	0	Parent=Os02t0792500-00
Chr02	irgsp1_rep	CDS	33664650	33664835	.	+	0	Parent=Os02t0792500-00
Chr02	irgsp1_rep	CDS	33665949	33666164	.	+	0	Parent=Os02t0792500-00
Chr02	irgsp1_rep	CDS	33666310	33666456	.	+	0	Parent=Os02t0792500-00
Chr02	irgsp1_rep	CDS	33667032	33667406	.	+	0	Parent=Os02t0792500-00
Chr02	irgsp1_rep	three_prime_UTR	33667407	33667409	.	+	.	Parent=Os02t0792500-00
Chr02	irgsp1_rep	mRNA	33680142	33681521	.	+	.	ID=Os02t0792600-01;Name=Os02t0792600-01;Locus_id=Os02g0792600;Note=Hypothetical conserved gene.;Transcript_evidence=AK102637 (DDBJ%2C Best hit);ORF_evidence=B9F3Z2 (UniProt);NIAS_FLcDNA=J033099O11;Expression=AK102637;TENOR=Os02t0792600-01;KEGG=Os02t0792600-01
Chr02	irgsp1_rep	five_prime_UTR	33680142	33680143	.	+	.	Parent=Os02t0792600-01
Chr02	irgsp1_rep	CDS	33680144	33680346	.	+	0	Parent=Os02t0792600-01
Chr02	irgsp1_rep	CDS	33680547	33680706	.	+	1	Parent=Os02t0792600-01
Chr02	irgsp1_rep	three_prime_UTR	33680707	33681521	.	+	.	Parent=Os02t0792600-01
Chr02	irgsp1_rep	mRNA	33681017	33681521	.	+	.	ID=Os02t0792600-02;Name=Os02t0792600-02;Locus_id=Os02g0792600;Note=Non-protein coding transcript.;Transcript_evidence=AK059575 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-030-A07;TENOR=Os02t0792600-02
Chr02	irgsp1_rep	exon	33681017	33681521	.	+	.	Parent=Os02t0792600-02
Chr02	irgsp1_rep	mRNA	33688668	33690441	.	+	.	ID=Os02t0792800-01;Name=Os02t0792800-01;Locus_id=Os02g0792800;Note=Similar to Rieske iron-sulfur protein Tic55 precursor.;Transcript_evidence=AK105616 (DDBJ%2C Best hit);ORF_evidence=NP_180055.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: chlorophyllide a oxygenase [overall] activity (GO:0010277),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=Pheophorbide a oxygenase (IPR013626),Rieske [2Fe-2S] iron-sulphur domain (IPR017941);NIAS_FLcDNA=001-200-B11;Expression=AK105616;TENOR=Os02t0792800-01;KEGG=Os02t0792800-01
Chr02	irgsp1_rep	five_prime_UTR	33688668	33688702	.	+	.	Parent=Os02t0792800-01
Chr02	irgsp1_rep	CDS	33688703	33690322	.	+	0	Parent=Os02t0792800-01
Chr02	irgsp1_rep	three_prime_UTR	33690323	33690441	.	+	.	Parent=Os02t0792800-01
Chr02	irgsp1_rep	mRNA	33688697	33690465	.	+	.	ID=Os02t0792800-02;Name=Os02t0792800-02;Locus_id=Os02g0792800;Note=Similar to Rieske iron-sulfur protein Tic55 precursor.;Transcript_evidence=AK120704 (DDBJ%2C Best hit);ORF_evidence=NP_180055.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: chlorophyllide a oxygenase [overall] activity (GO:0010277),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=Pheophorbide a oxygenase (IPR013626),Rieske [2Fe-2S] iron-sulphur domain (IPR017941);NIAS_FLcDNA=J013170P20;Expression=AK120704;TENOR=Os02t0792800-02;KEGG=Os02t0792800-02
Chr02	irgsp1_rep	five_prime_UTR	33688697	33688702	.	+	.	Parent=Os02t0792800-02
Chr02	irgsp1_rep	CDS	33688703	33690322	.	+	0	Parent=Os02t0792800-02
Chr02	irgsp1_rep	three_prime_UTR	33690323	33690465	.	+	.	Parent=Os02t0792800-02
Chr02	irgsp1_rep	mRNA	33690791	33694134	.	-	.	ID=Os02t0792900-01;Name=Os02t0792900-01;Locus_id=Os02g0792900;Note=TMS membrane protein/tumour differentially expressed protein family protein.;Transcript_evidence=AK068367 (DDBJ%2C Best hit),AK104731 (DDBJ%2C Best hit),AK106174 (DDBJ%2C Best hit);ORF_evidence=XP_002890152.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=TMS membrane protein/tumour differentially expressed protein (IPR005016);NIAS_FLcDNA=J013147C17,001-038-C07,001-208-C06;Expression=AK068367;TENOR=Os02t0792900-01;KEGG=Os02t0792900-01
Chr02	irgsp1_rep	five_prime_UTR	33693944	33694134	.	-	.	Parent=Os02t0792900-01
Chr02	irgsp1_rep	CDS	33693760	33693943	.	-	0	Parent=Os02t0792900-01
Chr02	irgsp1_rep	CDS	33693413	33693652	.	-	2	Parent=Os02t0792900-01
Chr02	irgsp1_rep	CDS	33692288	33692399	.	-	2	Parent=Os02t0792900-01
Chr02	irgsp1_rep	CDS	33692005	33692179	.	-	1	Parent=Os02t0792900-01
Chr02	irgsp1_rep	CDS	33691467	33691707	.	-	0	Parent=Os02t0792900-01
Chr02	irgsp1_rep	CDS	33691095	33691387	.	-	2	Parent=Os02t0792900-01
Chr02	irgsp1_rep	three_prime_UTR	33690791	33691094	.	-	.	Parent=Os02t0792900-01
Chr02	irgsp1_rep	mRNA	33690863	33694051	.	-	.	ID=Os02t0792900-03;Name=Os02t0792900-03;Locus_id=Os02g0792900;Note=TMS membrane protein/tumour differentially expressed protein family protein.;Transcript_evidence=AK119191 (DDBJ%2C Best hit);ORF_evidence=XP_002890152.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=TMS membrane protein/tumour differentially expressed protein (IPR005016);NIAS_FLcDNA=001-039-H03;Expression=AK119191;TENOR=Os02t0792900-03;KEGG=Os02t0792900-03
Chr02	irgsp1_rep	five_prime_UTR	33693944	33694051	.	-	.	Parent=Os02t0792900-03
Chr02	irgsp1_rep	CDS	33693760	33693943	.	-	0	Parent=Os02t0792900-03
Chr02	irgsp1_rep	CDS	33693413	33693652	.	-	2	Parent=Os02t0792900-03
Chr02	irgsp1_rep	CDS	33692288	33692399	.	-	2	Parent=Os02t0792900-03
Chr02	irgsp1_rep	CDS	33692005	33692179	.	-	1	Parent=Os02t0792900-03
Chr02	irgsp1_rep	CDS	33691467	33691707	.	-	0	Parent=Os02t0792900-03
Chr02	irgsp1_rep	CDS	33691095	33691387	.	-	2	Parent=Os02t0792900-03
Chr02	irgsp1_rep	three_prime_UTR	33690863	33691094	.	-	.	Parent=Os02t0792900-03
Chr02	irgsp1_rep	mRNA	33694803	33698561	.	-	.	ID=Os02t0793000-01;Name=Os02t0793000-01;Locus_id=Os02g0793000;CGSNL Gene Symbol=C3H18;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 18;Oryzabase Gene Symbol Synonym(s)=OsC3H18;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 18;Note=Zinc finger%2C CCCH-type domain containing protein.;Transcript_evidence=AK105863 (DDBJ%2C Best hit);ORF_evidence=Q6K687 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=D111/G-patch (IPR000467),Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=001-204-A04;Oryzabase=8581;Expression=AK105863;TENOR=Os02t0793000-01;KEGG=Os02t0793000-01
Chr02	irgsp1_rep	five_prime_UTR	33698425	33698561	.	-	.	Parent=Os02t0793000-01
Chr02	irgsp1_rep	CDS	33698287	33698424	.	-	0	Parent=Os02t0793000-01
Chr02	irgsp1_rep	CDS	33697147	33697458	.	-	0	Parent=Os02t0793000-01
Chr02	irgsp1_rep	CDS	33696351	33696411	.	-	0	Parent=Os02t0793000-01
Chr02	irgsp1_rep	CDS	33695068	33696071	.	-	2	Parent=Os02t0793000-01
Chr02	irgsp1_rep	three_prime_UTR	33694803	33695067	.	-	.	Parent=Os02t0793000-01
Chr02	irgsp1_rep	mRNA	33694789	33698554	.	-	.	ID=Os02t0793000-02;Name=Os02t0793000-02;Locus_id=Os02g0793000;CGSNL Gene Symbol=C3H18;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 18;Oryzabase Gene Symbol Synonym(s)=OsC3H18;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 18;Note=Similar to cDNA clone:001-204-A04%2C full insert sequence.;Transcript_evidence=AK070242 (DDBJ%2C Best hit),AK099173 (DDBJ%2C Best hit);ORF_evidence=B7EYF2 (UniProt);NIAS_FLcDNA=J023045J12,J023094N01;Oryzabase=8581;TENOR=Os02t0793000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	33697483	33698554	.	-	.	Parent=Os02t0793000-02
Chr02	irgsp1_rep	CDS	33697129	33697482	.	-	0	Parent=Os02t0793000-02
Chr02	irgsp1_rep	three_prime_UTR	33694789	33697128	.	-	.	Parent=Os02t0793000-02
Chr02	irgsp1_rep	mRNA	33700415	33706332	.	+	.	ID=Os02t0793100-01;Name=Os02t0793100-01;Locus_id=Os02g0793100;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=AK121357 (DDBJ%2C Best hit);ORF_evidence=NP_186827.2 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023123B03;Expression=AK121357;TENOR=Os02t0793100-01;KEGG=Os02t0793100-01
Chr02	irgsp1_rep	five_prime_UTR	33700415	33700494	.	+	.	Parent=Os02t0793100-01
Chr02	irgsp1_rep	CDS	33700495	33701619	.	+	0	Parent=Os02t0793100-01
Chr02	irgsp1_rep	CDS	33702216	33702812	.	+	0	Parent=Os02t0793100-01
Chr02	irgsp1_rep	CDS	33703369	33703730	.	+	0	Parent=Os02t0793100-01
Chr02	irgsp1_rep	CDS	33703890	33704190	.	+	1	Parent=Os02t0793100-01
Chr02	irgsp1_rep	CDS	33704656	33704778	.	+	0	Parent=Os02t0793100-01
Chr02	irgsp1_rep	CDS	33705042	33705497	.	+	0	Parent=Os02t0793100-01
Chr02	irgsp1_rep	CDS	33705609	33706109	.	+	0	Parent=Os02t0793100-01
Chr02	irgsp1_rep	three_prime_UTR	33706110	33706332	.	+	.	Parent=Os02t0793100-01
Chr02	irgsp1_rep	mRNA	33704878	33706093	.	-	.	ID=Os02t0793150-01;Name=Os02t0793150-01;Locus_id=Os02g0793150;Note=Hypothetical protein.;Transcript_evidence=AK240745 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J043038N11;TENOR=Os02t0793150-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	33706092	33706093	.	-	.	Parent=Os02t0793150-01
Chr02	irgsp1_rep	CDS	33705771	33706091	.	-	0	Parent=Os02t0793150-01
Chr02	irgsp1_rep	three_prime_UTR	33704878	33705770	.	-	.	Parent=Os02t0793150-01
Chr02	irgsp1_rep	mRNA	33706516	33708721	.	+	.	ID=Os02t0793200-01;Name=Os02t0793200-01;Locus_id=Os02g0793200;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK101158 (DDBJ%2C Best hit);ORF_evidence=Q6K684 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033027K13;Expression=AK101158;TENOR=Os02t0793200-01;KEGG=Os02t0793200-01
Chr02	irgsp1_rep	five_prime_UTR	33706516	33706642	.	+	.	Parent=Os02t0793200-01
Chr02	irgsp1_rep	CDS	33706643	33708064	.	+	0	Parent=Os02t0793200-01
Chr02	irgsp1_rep	three_prime_UTR	33708065	33708395	.	+	.	Parent=Os02t0793200-01
Chr02	irgsp1_rep	three_prime_UTR	33708510	33708721	.	+	.	Parent=Os02t0793200-01
Chr02	irgsp1_rep	mRNA	33710064	33719486	.	+	.	ID=Os02t0793300-01;Name=Os02t0793300-01;Locus_id=Os02g0793300;Note=Similar to Nudix hydrolase 3 (EC 3.6.1.-) (AtNUDT3). Splice isoform 2.;Transcript_evidence=AK072317 (DDBJ%2C Best hit);ORF_evidence=NP_565218.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Cellular Component: cytoplasm (GO:0005737),Molecular Function: dipeptidyl-peptidase activity (GO:0008239),Molecular Function: hydrolase activity (GO:0016787);InterPro=NUDIX hydrolase domain (IPR000086),Peptidase M49%2C dipeptidyl-peptidase III (IPR005317),NUDIX hydrolase domain-like (IPR015797);NIAS_FLcDNA=J023026G15;Expression=AK072317;TENOR=Os02t0793300-01;KEGG=Os02t0793300-01
Chr02	irgsp1_rep	five_prime_UTR	33710064	33710129	.	+	.	Parent=Os02t0793300-01
Chr02	irgsp1_rep	CDS	33710130	33710200	.	+	0	Parent=Os02t0793300-01
Chr02	irgsp1_rep	CDS	33710318	33710500	.	+	1	Parent=Os02t0793300-01
Chr02	irgsp1_rep	CDS	33710953	33711030	.	+	1	Parent=Os02t0793300-01
Chr02	irgsp1_rep	CDS	33711341	33711437	.	+	1	Parent=Os02t0793300-01
Chr02	irgsp1_rep	CDS	33711713	33711846	.	+	0	Parent=Os02t0793300-01
Chr02	irgsp1_rep	CDS	33712451	33712532	.	+	1	Parent=Os02t0793300-01
Chr02	irgsp1_rep	CDS	33713138	33713224	.	+	0	Parent=Os02t0793300-01
Chr02	irgsp1_rep	CDS	33713382	33713488	.	+	0	Parent=Os02t0793300-01
Chr02	irgsp1_rep	CDS	33714181	33714352	.	+	1	Parent=Os02t0793300-01
Chr02	irgsp1_rep	CDS	33714525	33714766	.	+	0	Parent=Os02t0793300-01
Chr02	irgsp1_rep	CDS	33714989	33715070	.	+	1	Parent=Os02t0793300-01
Chr02	irgsp1_rep	CDS	33715461	33715526	.	+	0	Parent=Os02t0793300-01
Chr02	irgsp1_rep	CDS	33716442	33716519	.	+	0	Parent=Os02t0793300-01
Chr02	irgsp1_rep	CDS	33716590	33716685	.	+	0	Parent=Os02t0793300-01
Chr02	irgsp1_rep	CDS	33717298	33717404	.	+	0	Parent=Os02t0793300-01
Chr02	irgsp1_rep	CDS	33717538	33717706	.	+	1	Parent=Os02t0793300-01
Chr02	irgsp1_rep	CDS	33718074	33718157	.	+	0	Parent=Os02t0793300-01
Chr02	irgsp1_rep	CDS	33718453	33718547	.	+	0	Parent=Os02t0793300-01
Chr02	irgsp1_rep	CDS	33718682	33718772	.	+	1	Parent=Os02t0793300-01
Chr02	irgsp1_rep	CDS	33718849	33718995	.	+	0	Parent=Os02t0793300-01
Chr02	irgsp1_rep	CDS	33719121	33719183	.	+	0	Parent=Os02t0793300-01
Chr02	irgsp1_rep	three_prime_UTR	33719184	33719486	.	+	.	Parent=Os02t0793300-01
Chr02	irgsp1_rep	mRNA	33720399	33721844	.	+	.	ID=Os02t0793400-01;Name=Os02t0793400-01;Locus_id=Os02g0793400;Note=Domain of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK109835 (DDBJ%2C Best hit);ORF_evidence=B9F3Z4 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=002-148-D06;TENOR=Os02t0793400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	33720399	33720400	.	+	.	Parent=Os02t0793400-01
Chr02	irgsp1_rep	CDS	33720401	33721498	.	+	0	Parent=Os02t0793400-01
Chr02	irgsp1_rep	three_prime_UTR	33721499	33721844	.	+	.	Parent=Os02t0793400-01
Chr02	irgsp1_rep	mRNA	33722143	33724854	.	-	.	ID=Os02t0793500-01;Name=Os02t0793500-01;Locus_id=Os02g0793500;Oryzabase Gene Symbol Synonym(s)=OsFbox114%2C Os_F0103;Oryzabase Gene Name Synonym(s)=F-box protein 114;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK287814 (DDBJ%2C Best hit);ORF_evidence=NP_001048370.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J065180F24;Oryzabase=16905;TENOR=Os02t0793500-01;KEGG=Os02t0793500-01
Chr02	irgsp1_rep	five_prime_UTR	33724617	33724854	.	-	.	Parent=Os02t0793500-01
Chr02	irgsp1_rep	five_prime_UTR	33724343	33724452	.	-	.	Parent=Os02t0793500-01
Chr02	irgsp1_rep	five_prime_UTR	33724138	33724269	.	-	.	Parent=Os02t0793500-01
Chr02	irgsp1_rep	CDS	33724129	33724137	.	-	0	Parent=Os02t0793500-01
Chr02	irgsp1_rep	CDS	33723090	33723968	.	-	0	Parent=Os02t0793500-01
Chr02	irgsp1_rep	CDS	33722866	33723018	.	-	0	Parent=Os02t0793500-01
Chr02	irgsp1_rep	CDS	33722316	33722708	.	-	0	Parent=Os02t0793500-01
Chr02	irgsp1_rep	three_prime_UTR	33722143	33722315	.	-	.	Parent=Os02t0793500-01
Chr02	irgsp1_rep	mRNA	33722427	33723959	.	+	.	ID=Os02t0793600-00;Name=Os02t0793600-00;Locus_id=Os02g0793600;Note=Hypothetical protein.;Transcript_evidence=tplb0061g20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0793600-00
Chr02	irgsp1_rep	CDS	33722427	33722687	.	+	0	Parent=Os02t0793600-00
Chr02	irgsp1_rep	CDS	33722832	33722909	.	+	0	Parent=Os02t0793600-00
Chr02	irgsp1_rep	three_prime_UTR	33722910	33723018	.	+	.	Parent=Os02t0793600-00
Chr02	irgsp1_rep	three_prime_UTR	33723090	33723959	.	+	.	Parent=Os02t0793600-00
Chr02	irgsp1_rep	mRNA	33727087	33727466	.	+	.	ID=Os02t0793700-01;Name=Os02t0793700-01;Locus_id=Os02g0793700;CGSNL Gene Symbol=SBP;CGSNL Gene Name=STEROID BINDING PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsSBP;Note=Similar to Membrane steroid-binding protein 1.;Transcript_evidence=AK072423 (DDBJ%2C Best hit);ORF_evidence=B6TF18 (UniProt);GO=Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome b5 (IPR001199);NIAS_FLcDNA=J023088H19;Oryzabase=7312;TENOR=Os02t0793700-01
Chr02	irgsp1_rep	five_prime_UTR	33727087	33727162	.	+	.	Parent=Os02t0793700-01
Chr02	irgsp1_rep	CDS	33727163	33727466	.	+	0	Parent=Os02t0793700-01
Chr02	irgsp1_rep	mRNA	33727121	33727811	.	+	.	ID=Os02t0793700-02;Name=Os02t0793700-02;Locus_id=Os02g0793700;CGSNL Gene Symbol=SBP;CGSNL Gene Name=STEROID BINDING PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsSBP;Note=CytoChrome b5 domain containing protein.;Transcript_evidence=AK062552 (DDBJ%2C Best hit);ORF_evidence=B6TF18 (UniProt);GO=Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome b5 (IPR001199);NIAS_FLcDNA=001-104-H03;Oryzabase=7312;Expression=AK062552;TENOR=Os02t0793700-02;KEGG=Os02t0793700-02
Chr02	irgsp1_rep	five_prime_UTR	33727121	33727162	.	+	.	Parent=Os02t0793700-02
Chr02	irgsp1_rep	CDS	33727163	33727471	.	+	0	Parent=Os02t0793700-02
Chr02	irgsp1_rep	three_prime_UTR	33727472	33727811	.	+	.	Parent=Os02t0793700-02
Chr02	irgsp1_rep	mRNA	33731759	33733654	.	+	.	ID=Os02t0793800-00;Name=Os02t0793800-00;Locus_id=Os02g0793800;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001173180.1 (RefSeq);TENOR=Os02t0793800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	33731759	33731878	.	+	0	Parent=Os02t0793800-00
Chr02	irgsp1_rep	CDS	33732009	33732182	.	+	0	Parent=Os02t0793800-00
Chr02	irgsp1_rep	CDS	33732276	33732360	.	+	0	Parent=Os02t0793800-00
Chr02	irgsp1_rep	CDS	33733161	33733654	.	+	2	Parent=Os02t0793800-00
Chr02	irgsp1_rep	mRNA	33731767	33733524	.	-	.	ID=Os02t0793850-00;Name=Os02t0793850-00;Locus_id=Os02g0793850;Note=Non-protein coding transcript.;Transcript_evidence=tplb0045e14 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os02t0793850-00
Chr02	irgsp1_rep	exon	33733124	33733524	.	-	.	Parent=Os02t0793850-00
Chr02	irgsp1_rep	exon	33732752	33733053	.	-	.	Parent=Os02t0793850-00
Chr02	irgsp1_rep	exon	33732286	33732378	.	-	.	Parent=Os02t0793850-00
Chr02	irgsp1_rep	exon	33732019	33732190	.	-	.	Parent=Os02t0793850-00
Chr02	irgsp1_rep	exon	33731767	33731890	.	-	.	Parent=Os02t0793850-00
Chr02	irgsp1_rep	mRNA	33734437	33737329	.	-	.	ID=Os02t0793900-01;Name=Os02t0793900-01;Locus_id=Os02g0793900;RAP-DB Gene Symbol Synonym(s)=HDR1;RAP-DB Gene Name Synonym(s)=HEADING DATE REPRESSOR 1%2C Heading Date Repressor1%2C Heading Date Repressor 1;CGSNL Gene Symbol=HDR1;CGSNL Gene Name=HEADING DATE REPRESSOR 1;Oryzabase Gene Name Synonym(s)=Heading Date Repressor1%2C Heading Date Repressor 1;Note=Ubiquitous nuclear protein%2C Regulation of photoperiodic flowering;Transcript_evidence=AK102581,NM_001054907;ORF_evidence=Q6K678;NIAS_FLcDNA=J033098B13;Manual Curation=March 18%2C 2016;Literature_PMID=26954091;Oryzabase=20952;Expression=AK102581;TENOR=Os02t0793900-01;KEGG=Os02t0793900-01
Chr02	irgsp1_rep	five_prime_UTR	33737069	33737329	.	-	.	Parent=Os02t0793900-01
Chr02	irgsp1_rep	five_prime_UTR	33736878	33736906	.	-	.	Parent=Os02t0793900-01
Chr02	irgsp1_rep	CDS	33736811	33736877	.	-	0	Parent=Os02t0793900-01
Chr02	irgsp1_rep	CDS	33735129	33735478	.	-	2	Parent=Os02t0793900-01
Chr02	irgsp1_rep	CDS	33734668	33734883	.	-	0	Parent=Os02t0793900-01
Chr02	irgsp1_rep	three_prime_UTR	33734437	33734667	.	-	.	Parent=Os02t0793900-01
Chr02	irgsp1_rep	mRNA	33738687	33742250	.	-	.	ID=Os02t0794000-01;Name=Os02t0794000-01;Locus_id=Os02g0794000;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=AK073661 (DDBJ%2C Best hit);ORF_evidence=B9F3Z7 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J033048C06;Expression=AK073661;TENOR=Os02t0794000-01;KEGG=Os02t0794000-01
Chr02	irgsp1_rep	five_prime_UTR	33742065	33742250	.	-	.	Parent=Os02t0794000-01
Chr02	irgsp1_rep	CDS	33742004	33742064	.	-	0	Parent=Os02t0794000-01
Chr02	irgsp1_rep	CDS	33740227	33740616	.	-	2	Parent=Os02t0794000-01
Chr02	irgsp1_rep	CDS	33739274	33740152	.	-	2	Parent=Os02t0794000-01
Chr02	irgsp1_rep	CDS	33738939	33739171	.	-	2	Parent=Os02t0794000-01
Chr02	irgsp1_rep	three_prime_UTR	33738687	33738938	.	-	.	Parent=Os02t0794000-01
Chr02	irgsp1_rep	mRNA	33741365	33742126	.	-	.	ID=Os02t0794000-02;Name=Os02t0794000-02;Locus_id=Os02g0794000;Note=Non-protein coding transcript.;Transcript_evidence=AK107695 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-132-C05;TENOR=Os02t0794000-02
Chr02	irgsp1_rep	exon	33741365	33742126	.	-	.	Parent=Os02t0794000-02
Chr02	irgsp1_rep	mRNA	33755722	33758092	.	+	.	ID=Os02t0794300-01;Name=Os02t0794300-01;Locus_id=Os02g0794300;Note=Protein of unknown function DUF566 family protein.;Transcript_evidence=AK242351 (DDBJ%2C Best hit);ORF_evidence=NP_001048375.2 (RefSeq);InterPro=Protein of unknown function DUF566 (IPR007573);NIAS_FLcDNA=J080014F11;TENOR=Os02t0794300-01;KEGG=Os02t0794300-01
Chr02	irgsp1_rep	five_prime_UTR	33755722	33755723	.	+	.	Parent=Os02t0794300-01
Chr02	irgsp1_rep	CDS	33755724	33755843	.	+	0	Parent=Os02t0794300-01
Chr02	irgsp1_rep	CDS	33756387	33756503	.	+	0	Parent=Os02t0794300-01
Chr02	irgsp1_rep	CDS	33756829	33756918	.	+	0	Parent=Os02t0794300-01
Chr02	irgsp1_rep	CDS	33757478	33757585	.	+	0	Parent=Os02t0794300-01
Chr02	irgsp1_rep	CDS	33757811	33757858	.	+	0	Parent=Os02t0794300-01
Chr02	irgsp1_rep	three_prime_UTR	33757859	33758092	.	+	.	Parent=Os02t0794300-01
Chr02	irgsp1_rep	mRNA	33758966	33762653	.	-	.	ID=Os02t0794400-01;Name=Os02t0794400-01;Locus_id=Os02g0794400;Note=Similar to Translation initiation factor IF-3 (Fragment).;Transcript_evidence=AK065845 (DDBJ%2C Best hit);ORF_evidence=D7U1D4 (UniProt);GO=Biological Process: translational initiation (GO:0006413),Molecular Function: translation initiation factor activity (GO:0003743);InterPro=Translation initiation factor 3 (IPR001288),Translation initiation factor 3%2C N-terminal (IPR019814),Translation initiation factor 3%2C C-terminal (IPR019815);NIAS_FLcDNA=J013042M03;TENOR=Os02t0794400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	33762604	33762653	.	-	.	Parent=Os02t0794400-01
Chr02	irgsp1_rep	CDS	33762593	33762603	.	-	0	Parent=Os02t0794400-01
Chr02	irgsp1_rep	CDS	33762273	33762296	.	-	1	Parent=Os02t0794400-01
Chr02	irgsp1_rep	CDS	33761976	33762015	.	-	1	Parent=Os02t0794400-01
Chr02	irgsp1_rep	CDS	33761789	33761848	.	-	0	Parent=Os02t0794400-01
Chr02	irgsp1_rep	CDS	33761275	33761336	.	-	0	Parent=Os02t0794400-01
Chr02	irgsp1_rep	CDS	33760656	33760711	.	-	1	Parent=Os02t0794400-01
Chr02	irgsp1_rep	CDS	33760536	33760569	.	-	2	Parent=Os02t0794400-01
Chr02	irgsp1_rep	CDS	33760135	33760207	.	-	1	Parent=Os02t0794400-01
Chr02	irgsp1_rep	CDS	33759961	33760053	.	-	0	Parent=Os02t0794400-01
Chr02	irgsp1_rep	CDS	33759564	33759785	.	-	0	Parent=Os02t0794400-01
Chr02	irgsp1_rep	three_prime_UTR	33759521	33759563	.	-	.	Parent=Os02t0794400-01
Chr02	irgsp1_rep	three_prime_UTR	33758966	33759436	.	-	.	Parent=Os02t0794400-01
Chr02	irgsp1_rep	mRNA	33769298	33776066	.	+	.	ID=Os02t0794500-01;Name=Os02t0794500-01;Locus_id=Os02g0794500;CGSNL Gene Symbol=CPD2B;CGSNL Gene Name=TYPE IIB CARBOXYPEPTIDASE;Oryzabase Gene Symbol Synonym(s)=OsSCP10%2C SCP10;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase II B chain%2C Serine carboxypeptidase 10;Note=Similar to Serine carboxypeptidase II precursor (EC 3.4.16.6) (Carboxypeptidase D) (Bri1 suppressor 1) [Contains: Serine carboxypeptidase II chain A%3B Serine carboxypeptidase II chain B].;Transcript_evidence=AK111818 (DDBJ%2C Best hit);ORF_evidence=B6TSK4 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=J023009B06;Oryzabase=17705;Expression=AK111818;TENOR=Os02t0794500-01;KEGG=Os02t0794500-01 (EC:3.4.16.6)
Chr02	irgsp1_rep	five_prime_UTR	33769298	33769750	.	+	.	Parent=Os02t0794500-01
Chr02	irgsp1_rep	CDS	33769751	33770018	.	+	0	Parent=Os02t0794500-01
Chr02	irgsp1_rep	CDS	33773517	33773624	.	+	2	Parent=Os02t0794500-01
Chr02	irgsp1_rep	CDS	33773706	33773801	.	+	2	Parent=Os02t0794500-01
Chr02	irgsp1_rep	CDS	33773913	33774005	.	+	2	Parent=Os02t0794500-01
Chr02	irgsp1_rep	CDS	33774105	33774190	.	+	2	Parent=Os02t0794500-01
Chr02	irgsp1_rep	CDS	33774516	33774940	.	+	0	Parent=Os02t0794500-01
Chr02	irgsp1_rep	CDS	33775041	33775136	.	+	1	Parent=Os02t0794500-01
Chr02	irgsp1_rep	CDS	33775238	33775343	.	+	1	Parent=Os02t0794500-01
Chr02	irgsp1_rep	CDS	33775449	33775592	.	+	0	Parent=Os02t0794500-01
Chr02	irgsp1_rep	three_prime_UTR	33775593	33776066	.	+	.	Parent=Os02t0794500-01
Chr02	irgsp1_rep	mRNA	33769408	33775948	.	+	.	ID=Os02t0794500-02;Name=Os02t0794500-02;Locus_id=Os02g0794500;CGSNL Gene Symbol=CPD2B;CGSNL Gene Name=TYPE IIB CARBOXYPEPTIDASE;Oryzabase Gene Symbol Synonym(s)=OsSCP10%2C SCP10;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase II B chain%2C Serine carboxypeptidase 10;Note=Similar to Serine carboxypeptidase II precursor (EC 3.4.16.6) (Carboxypeptidase D) (Bri1 suppressor 1) [Contains: Serine carboxypeptidase II chain A%3B Serine carboxypeptidase II chain B].;Transcript_evidence=AK112076 (DDBJ%2C Best hit);ORF_evidence=B6TSK4 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=001-124-A08;Oryzabase=17705;Expression=AK112076;TENOR=Os02t0794500-02;KEGG=Os02t0794500-02 (EC:3.4.16.6)
Chr02	irgsp1_rep	five_prime_UTR	33769408	33769750	.	+	.	Parent=Os02t0794500-02
Chr02	irgsp1_rep	CDS	33769751	33770018	.	+	0	Parent=Os02t0794500-02
Chr02	irgsp1_rep	CDS	33773517	33773624	.	+	2	Parent=Os02t0794500-02
Chr02	irgsp1_rep	CDS	33773706	33773801	.	+	2	Parent=Os02t0794500-02
Chr02	irgsp1_rep	CDS	33773913	33774005	.	+	2	Parent=Os02t0794500-02
Chr02	irgsp1_rep	CDS	33774105	33774190	.	+	2	Parent=Os02t0794500-02
Chr02	irgsp1_rep	CDS	33774516	33774940	.	+	0	Parent=Os02t0794500-02
Chr02	irgsp1_rep	CDS	33775041	33775136	.	+	1	Parent=Os02t0794500-02
Chr02	irgsp1_rep	CDS	33775238	33775343	.	+	1	Parent=Os02t0794500-02
Chr02	irgsp1_rep	CDS	33775449	33775592	.	+	0	Parent=Os02t0794500-02
Chr02	irgsp1_rep	three_prime_UTR	33775593	33775948	.	+	.	Parent=Os02t0794500-02
Chr02	irgsp1_rep	mRNA	33769418	33775797	.	+	.	ID=Os02t0794500-03;Name=Os02t0794500-03;Locus_id=Os02g0794500;CGSNL Gene Symbol=CPD2B;CGSNL Gene Name=TYPE IIB CARBOXYPEPTIDASE;Oryzabase Gene Symbol Synonym(s)=OsSCP10%2C SCP10;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase II B chain%2C Serine carboxypeptidase 10;Note=Similar to serine carboxypeptidase K10B2.2.;Transcript_evidence=AK073936 (DDBJ%2C Best hit);ORF_evidence=B6TSK4 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=J033077J01;Oryzabase=17705;Expression=AK073936;TENOR=Os02t0794500-03;KEGG=Os02t0794500-03 (EC:3.4.16.6)
Chr02	irgsp1_rep	five_prime_UTR	33769418	33769750	.	+	.	Parent=Os02t0794500-03
Chr02	irgsp1_rep	CDS	33769751	33770018	.	+	0	Parent=Os02t0794500-03
Chr02	irgsp1_rep	CDS	33773517	33773624	.	+	2	Parent=Os02t0794500-03
Chr02	irgsp1_rep	CDS	33773706	33773801	.	+	2	Parent=Os02t0794500-03
Chr02	irgsp1_rep	CDS	33773913	33774005	.	+	2	Parent=Os02t0794500-03
Chr02	irgsp1_rep	CDS	33774105	33774190	.	+	2	Parent=Os02t0794500-03
Chr02	irgsp1_rep	CDS	33774516	33774940	.	+	0	Parent=Os02t0794500-03
Chr02	irgsp1_rep	CDS	33775041	33775140	.	+	1	Parent=Os02t0794500-03
Chr02	irgsp1_rep	three_prime_UTR	33775141	33775343	.	+	.	Parent=Os02t0794500-03
Chr02	irgsp1_rep	three_prime_UTR	33775449	33775797	.	+	.	Parent=Os02t0794500-03
Chr02	irgsp1_rep	mRNA	33772860	33775801	.	+	.	ID=Os02t0794500-04;Name=Os02t0794500-04;Locus_id=Os02g0794500;CGSNL Gene Symbol=CPD2B;CGSNL Gene Name=TYPE IIB CARBOXYPEPTIDASE;Oryzabase Gene Symbol Synonym(s)=OsSCP10%2C SCP10;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase II B chain%2C Serine carboxypeptidase 10;Note=Similar to serine carboxypeptidase K10B2.2.;Transcript_evidence=AK111801 (DDBJ%2C Best hit);ORF_evidence=B6TSK4 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=J013059J16;Oryzabase=17705;Expression=AK111801;TENOR=Os02t0794500-04;KEGG=Os02t0794500-04 (EC:3.4.16.6)
Chr02	irgsp1_rep	five_prime_UTR	33772860	33773331	.	+	.	Parent=Os02t0794500-04
Chr02	irgsp1_rep	CDS	33773332	33773338	.	+	0	Parent=Os02t0794500-04
Chr02	irgsp1_rep	CDS	33773517	33773624	.	+	2	Parent=Os02t0794500-04
Chr02	irgsp1_rep	CDS	33773706	33773801	.	+	2	Parent=Os02t0794500-04
Chr02	irgsp1_rep	CDS	33773913	33774005	.	+	2	Parent=Os02t0794500-04
Chr02	irgsp1_rep	CDS	33774105	33774190	.	+	2	Parent=Os02t0794500-04
Chr02	irgsp1_rep	CDS	33774516	33774940	.	+	0	Parent=Os02t0794500-04
Chr02	irgsp1_rep	CDS	33775041	33775136	.	+	1	Parent=Os02t0794500-04
Chr02	irgsp1_rep	CDS	33775238	33775343	.	+	1	Parent=Os02t0794500-04
Chr02	irgsp1_rep	CDS	33775449	33775592	.	+	0	Parent=Os02t0794500-04
Chr02	irgsp1_rep	three_prime_UTR	33775593	33775801	.	+	.	Parent=Os02t0794500-04
Chr02	irgsp1_rep	mRNA	33775996	33777583	.	-	.	ID=Os02t0794600-01;Name=Os02t0794600-01;Locus_id=Os02g0794600;Note=Similar to Copper chaperone COX17-1.;Transcript_evidence=AK108336 (DDBJ%2C Best hit);ORF_evidence=B6TDC7 (UniProt);GO=Biological Process: copper ion transport (GO:0006825),Cellular Component: mitochondrial intermembrane space (GO:0005758),Molecular Function: copper ion binding (GO:0005507),Molecular Function: copper chaperone activity (GO:0016531);InterPro=CytoChrome c oxidase copper chaperone (IPR007745),MTCP1 (IPR009069);NIAS_FLcDNA=002-142-A06;Expression=AK108336;TENOR=Os02t0794600-01;KEGG=Os02t0794600-01
Chr02	irgsp1_rep	five_prime_UTR	33777470	33777583	.	-	.	Parent=Os02t0794600-01
Chr02	irgsp1_rep	five_prime_UTR	33776500	33776525	.	-	.	Parent=Os02t0794600-01
Chr02	irgsp1_rep	CDS	33776260	33776499	.	-	0	Parent=Os02t0794600-01
Chr02	irgsp1_rep	three_prime_UTR	33775996	33776259	.	-	.	Parent=Os02t0794600-01
Chr02	irgsp1_rep	mRNA	33779324	33781476	.	-	.	ID=Os02t0794700-01;Name=Os02t0794700-01;Locus_id=Os02g0794700;Note=Similar to Cytosol aminopeptidase (EC 3.4.11.1) (Leucine aminopeptidase) (LAP) (Leucyl aminopeptidase) (Proline aminopeptidase) (EC 3.4.11.5) (Prolyl aminopeptidase).;Transcript_evidence=AK058513 (DDBJ%2C Best hit);ORF_evidence=NP_179997.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Biological Process: protein metabolic process (GO:0019538),Cellular Component: intracellular (GO:0005622),Cellular Component: cytoplasm (GO:0005737),Molecular Function: aminopeptidase activity (GO:0004177),Molecular Function: metalloexopeptidase activity (GO:0008235),Molecular Function: manganese ion binding (GO:0030145);InterPro=Peptidase M17%2C leucyl aminopeptidase%2C C-terminal (IPR000819),Peptidase M17 (IPR011356);NIAS_FLcDNA=001-016-G10;Expression=AK058513;TENOR=Os02t0794700-01;KEGG=Os02t0794700-01 (EC:3.4.11.1%2C EC:3.4.11.5)
Chr02	irgsp1_rep	five_prime_UTR	33781475	33781476	.	-	.	Parent=Os02t0794700-01
Chr02	irgsp1_rep	CDS	33781429	33781474	.	-	0	Parent=Os02t0794700-01
Chr02	irgsp1_rep	CDS	33781106	33781331	.	-	2	Parent=Os02t0794700-01
Chr02	irgsp1_rep	CDS	33780757	33780979	.	-	1	Parent=Os02t0794700-01
Chr02	irgsp1_rep	CDS	33780552	33780629	.	-	0	Parent=Os02t0794700-01
Chr02	irgsp1_rep	CDS	33780214	33780274	.	-	0	Parent=Os02t0794700-01
Chr02	irgsp1_rep	CDS	33779924	33780111	.	-	2	Parent=Os02t0794700-01
Chr02	irgsp1_rep	CDS	33779669	33779797	.	-	0	Parent=Os02t0794700-01
Chr02	irgsp1_rep	three_prime_UTR	33779324	33779668	.	-	.	Parent=Os02t0794700-01
Chr02	irgsp1_rep	mRNA	33779324	33781298	.	-	.	ID=Os02t0794700-02;Name=Os02t0794700-02;Locus_id=Os02g0794700;Note=Similar to Leucine aminopeptidase (Cytosol aminopeptidase) (Fragment).;Transcript_evidence=AK104150 (DDBJ%2C Best hit);ORF_evidence=Q43034 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: protein metabolic process (GO:0019538),Cellular Component: intracellular (GO:0005622),Cellular Component: cytoplasm (GO:0005737),Molecular Function: aminopeptidase activity (GO:0004177),Molecular Function: metalloexopeptidase activity (GO:0008235),Molecular Function: manganese ion binding (GO:0030145);InterPro=Peptidase M17%2C leucyl aminopeptidase%2C C-terminal (IPR000819),Peptidase M17 (IPR011356);NIAS_FLcDNA=006-208-D05;Expression=AK104150;TENOR=Os02t0794700-02;KEGG=Os02t0794700-02 (EC:3.4.11.1%2C EC:3.4.11.5)
Chr02	irgsp1_rep	five_prime_UTR	33781297	33781298	.	-	.	Parent=Os02t0794700-02
Chr02	irgsp1_rep	CDS	33781106	33781296	.	-	0	Parent=Os02t0794700-02
Chr02	irgsp1_rep	CDS	33780757	33780979	.	-	1	Parent=Os02t0794700-02
Chr02	irgsp1_rep	CDS	33780552	33780629	.	-	0	Parent=Os02t0794700-02
Chr02	irgsp1_rep	CDS	33780214	33780274	.	-	0	Parent=Os02t0794700-02
Chr02	irgsp1_rep	CDS	33779924	33780111	.	-	2	Parent=Os02t0794700-02
Chr02	irgsp1_rep	CDS	33779669	33779797	.	-	0	Parent=Os02t0794700-02
Chr02	irgsp1_rep	three_prime_UTR	33779324	33779668	.	-	.	Parent=Os02t0794700-02
Chr02	irgsp1_rep	mRNA	33786224	33794787	.	-	.	ID=Os02t0794900-00;Name=Os02t0794900-00;Locus_id=Os02g0794900;Oryzabase Gene Symbol Synonym(s)=OsFH7%2C FH7;Oryzabase Gene Name Synonym(s)=formin homology 7%2C forming family protein 7%2C FH2 protein 7%2C FH2 domain protein 7Os02g0794700%2C Os02g0794900;Note=Formin-like protein 7.;Transcript_evidence=Q6K8Z4 (UniProt);ORF_evidence=Q6K8Z4 (UniProt);GO=Biological Process: cellular component organization (GO:0016043),Biological Process: actin cytoskeleton organization (GO:0030036),Molecular Function: actin binding (GO:0003779),Molecular Function: protein binding (GO:0005515);InterPro=Actin-binding FH2/DRF autoregulatory (IPR003104),Tensin phosphatase%2C C2 domain (IPR014020),Actin-binding FH2 (IPR015425);Oryzabase=21778;TENOR=Os02t0794900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	33794733	33794787	.	-	0	Parent=Os02t0794900-00
Chr02	irgsp1_rep	CDS	33793579	33794279	.	-	2	Parent=Os02t0794900-00
Chr02	irgsp1_rep	CDS	33793284	33793382	.	-	0	Parent=Os02t0794900-00
Chr02	irgsp1_rep	CDS	33790922	33793083	.	-	0	Parent=Os02t0794900-00
Chr02	irgsp1_rep	CDS	33790715	33790835	.	-	1	Parent=Os02t0794900-00
Chr02	irgsp1_rep	CDS	33790551	33790622	.	-	0	Parent=Os02t0794900-00
Chr02	irgsp1_rep	CDS	33790212	33790310	.	-	0	Parent=Os02t0794900-00
Chr02	irgsp1_rep	CDS	33790041	33790082	.	-	0	Parent=Os02t0794900-00
Chr02	irgsp1_rep	CDS	33789614	33789694	.	-	0	Parent=Os02t0794900-00
Chr02	irgsp1_rep	CDS	33789456	33789506	.	-	0	Parent=Os02t0794900-00
Chr02	irgsp1_rep	CDS	33789285	33789366	.	-	0	Parent=Os02t0794900-00
Chr02	irgsp1_rep	CDS	33788788	33788882	.	-	2	Parent=Os02t0794900-00
Chr02	irgsp1_rep	CDS	33788116	33788187	.	-	0	Parent=Os02t0794900-00
Chr02	irgsp1_rep	CDS	33787921	33788037	.	-	0	Parent=Os02t0794900-00
Chr02	irgsp1_rep	CDS	33787015	33787083	.	-	0	Parent=Os02t0794900-00
Chr02	irgsp1_rep	CDS	33786859	33786925	.	-	0	Parent=Os02t0794900-00
Chr02	irgsp1_rep	CDS	33786224	33786378	.	-	2	Parent=Os02t0794900-00
Chr02	irgsp1_rep	mRNA	33797366	33803760	.	+	.	ID=Os02t0795000-01;Name=Os02t0795000-01;Locus_id=Os02g0795000;CGSNL Gene Symbol=UBP7-2;CGSNL Gene Name=UBIQUITIN-SPECIFIC PROCESSING PROTEASE 7-2;Oryzabase Gene Symbol Synonym(s)=OsUBP7-2%2C OsUBP23%2C UBP23;Oryzabase Gene Name Synonym(s)=ubiquitin-specific processing protease 7-2%2C Ubiquitin-specific protease 23;Note=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 family protein.;Transcript_evidence=AK120097 (DDBJ%2C Best hit);ORF_evidence=B8AE49 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Molecular Function: ubiquitin thiolesterase activity (GO:0004221);InterPro=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (IPR001394),Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2%2C conserved site (IPR018200);NIAS_FLcDNA=J013022C03;Oryzabase=22886;Expression=AK120097;TENOR=Os02t0795000-01;KEGG=Os02t0795000-01 (EC:3.1.2.15)
Chr02	irgsp1_rep	five_prime_UTR	33797366	33797482	.	+	.	Parent=Os02t0795000-01
Chr02	irgsp1_rep	CDS	33797483	33797734	.	+	0	Parent=Os02t0795000-01
Chr02	irgsp1_rep	CDS	33798125	33798239	.	+	0	Parent=Os02t0795000-01
Chr02	irgsp1_rep	CDS	33798656	33798766	.	+	2	Parent=Os02t0795000-01
Chr02	irgsp1_rep	CDS	33798874	33799046	.	+	2	Parent=Os02t0795000-01
Chr02	irgsp1_rep	CDS	33799145	33799471	.	+	0	Parent=Os02t0795000-01
Chr02	irgsp1_rep	CDS	33799574	33799699	.	+	0	Parent=Os02t0795000-01
Chr02	irgsp1_rep	CDS	33800322	33801632	.	+	0	Parent=Os02t0795000-01
Chr02	irgsp1_rep	CDS	33801728	33801889	.	+	0	Parent=Os02t0795000-01
Chr02	irgsp1_rep	CDS	33802056	33802779	.	+	0	Parent=Os02t0795000-01
Chr02	irgsp1_rep	CDS	33802865	33802958	.	+	2	Parent=Os02t0795000-01
Chr02	irgsp1_rep	CDS	33803331	33803493	.	+	1	Parent=Os02t0795000-01
Chr02	irgsp1_rep	three_prime_UTR	33803494	33803760	.	+	.	Parent=Os02t0795000-01
Chr02	irgsp1_rep	mRNA	33804921	33806513	.	-	.	ID=Os02t0795100-01;Name=Os02t0795100-01;Locus_id=Os02g0795100;Note=Eukaryotic transcription factor%2C DNA-binding domain containing protein.;Transcript_evidence=AK106456 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-103-F12;Expression=AK106456;TENOR=Os02t0795100-01;KEGG=Os02t0795100-01
Chr02	irgsp1_rep	five_prime_UTR	33805583	33806513	.	-	.	Parent=Os02t0795100-01
Chr02	irgsp1_rep	CDS	33804992	33805582	.	-	0	Parent=Os02t0795100-01
Chr02	irgsp1_rep	three_prime_UTR	33804921	33804991	.	-	.	Parent=Os02t0795100-01
Chr02	irgsp1_rep	mRNA	33805019	33806485	.	+	.	ID=Os02t0795200-01;Name=Os02t0795200-01;Locus_id=Os02g0795200;Note=Conserved hypothetical protein.;Transcript_evidence=AK059349 (DDBJ%2C Best hit);ORF_evidence=A2XAJ0 (UniProt);NIAS_FLcDNA=001-026-C08;Expression=AK059349;TENOR=Os02t0795200-01;KEGG=Os02t0795200-01
Chr02	irgsp1_rep	five_prime_UTR	33805019	33805105	.	+	.	Parent=Os02t0795200-01
Chr02	irgsp1_rep	CDS	33805106	33805448	.	+	0	Parent=Os02t0795200-01
Chr02	irgsp1_rep	CDS	33805525	33805907	.	+	2	Parent=Os02t0795200-01
Chr02	irgsp1_rep	CDS	33805990	33806310	.	+	0	Parent=Os02t0795200-01
Chr02	irgsp1_rep	three_prime_UTR	33806311	33806485	.	+	.	Parent=Os02t0795200-01
Chr02	irgsp1_rep	mRNA	33807079	33815415	.	-	.	ID=Os02t0795300-01;Name=Os02t0795300-01;Locus_id=Os02g0795300;RAP-DB Gene Symbol Synonym(s)=OsNCA1b;RAP-DB Gene Name Synonym(s)=NO CATALASE ACTIVITY 1b;CGSNL Gene Symbol=NCA1B;CGSNL Gene Name=NO CATALASE ACTIVITY 1B;Oryzabase Gene Symbol Synonym(s)=OsNCA1b%2C NCA1b;Note=Chaperone protein to regulate catalase (CAT) activity;Transcript_evidence=AK070650;ORF_evidence=Q6K8Z1;GO=Molecular Function: protein binding (GO:0005515);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Tetratricopeptide-like helical domain superfamily (IPR011990),Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING-type%2C conserved site (IPR017907);NIAS_FLcDNA=J023061K06;Manual Curation=April 9%2C 2019;Literature_PMID=30885124;Oryzabase=22826;TENOR=Os02t0795300-01;Subcellular location=cytosol (GO:0005829)
Chr02	irgsp1_rep	five_prime_UTR	33815316	33815415	.	-	.	Parent=Os02t0795300-01
Chr02	irgsp1_rep	five_prime_UTR	33810990	33811021	.	-	.	Parent=Os02t0795300-01
Chr02	irgsp1_rep	CDS	33810700	33810989	.	-	0	Parent=Os02t0795300-01
Chr02	irgsp1_rep	CDS	33810368	33810596	.	-	1	Parent=Os02t0795300-01
Chr02	irgsp1_rep	CDS	33810076	33810221	.	-	0	Parent=Os02t0795300-01
Chr02	irgsp1_rep	CDS	33808888	33808975	.	-	1	Parent=Os02t0795300-01
Chr02	irgsp1_rep	CDS	33808661	33808807	.	-	0	Parent=Os02t0795300-01
Chr02	irgsp1_rep	CDS	33807601	33807750	.	-	0	Parent=Os02t0795300-01
Chr02	irgsp1_rep	CDS	33807455	33807502	.	-	0	Parent=Os02t0795300-01
Chr02	irgsp1_rep	three_prime_UTR	33807079	33807454	.	-	.	Parent=Os02t0795300-01
Chr02	irgsp1_rep	mRNA	33807014	33811782	.	-	.	ID=Os02t0795300-02;Name=Os02t0795300-02;Locus_id=Os02g0795300;CGSNL Gene Symbol=NCA1B;CGSNL Gene Name=NO CATALASE ACTIVITY 1B;Oryzabase Gene Symbol Synonym(s)=OsNCA1b%2C NCA1b;Note=Similar to protein binding / zinc ion binding.;Transcript_evidence=AK071071 (DDBJ%2C Best hit);ORF_evidence=NP_191004.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Tetratricopeptide-like helical (IPR011990),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907);NIAS_FLcDNA=J023078L19;Manual Curation=April 9%2C 2019;Oryzabase=22826;TENOR=Os02t0795300-02
Chr02	irgsp1_rep	five_prime_UTR	33811389	33811782	.	-	.	Parent=Os02t0795300-02
Chr02	irgsp1_rep	five_prime_UTR	33810990	33811021	.	-	.	Parent=Os02t0795300-02
Chr02	irgsp1_rep	CDS	33810700	33810989	.	-	0	Parent=Os02t0795300-02
Chr02	irgsp1_rep	CDS	33810368	33810596	.	-	1	Parent=Os02t0795300-02
Chr02	irgsp1_rep	CDS	33810076	33810221	.	-	0	Parent=Os02t0795300-02
Chr02	irgsp1_rep	CDS	33808888	33808975	.	-	1	Parent=Os02t0795300-02
Chr02	irgsp1_rep	CDS	33808661	33808807	.	-	0	Parent=Os02t0795300-02
Chr02	irgsp1_rep	CDS	33807601	33807750	.	-	0	Parent=Os02t0795300-02
Chr02	irgsp1_rep	CDS	33807455	33807502	.	-	0	Parent=Os02t0795300-02
Chr02	irgsp1_rep	three_prime_UTR	33807014	33807454	.	-	.	Parent=Os02t0795300-02
Chr02	irgsp1_rep	mRNA	33821223	33823765	.	-	.	ID=Os02t0795666-00;Name=Os02t0795666-00;Locus_id=Os02g0795666;Note=Conserved hypothetical protein.;Transcript_evidence=AK372725 (DDBJ);ORF_evidence=Q6K8Y7 (UniProt);TENOR=Os02t0795666-00
Chr02	irgsp1_rep	five_prime_UTR	33823757	33823765	.	-	.	Parent=Os02t0795666-00
Chr02	irgsp1_rep	CDS	33823613	33823756	.	-	0	Parent=Os02t0795666-00
Chr02	irgsp1_rep	CDS	33823446	33823532	.	-	0	Parent=Os02t0795666-00
Chr02	irgsp1_rep	CDS	33822819	33823004	.	-	0	Parent=Os02t0795666-00
Chr02	irgsp1_rep	CDS	33822115	33822162	.	-	0	Parent=Os02t0795666-00
Chr02	irgsp1_rep	three_prime_UTR	33821959	33822114	.	-	.	Parent=Os02t0795666-00
Chr02	irgsp1_rep	three_prime_UTR	33821684	33821830	.	-	.	Parent=Os02t0795666-00
Chr02	irgsp1_rep	three_prime_UTR	33821223	33821582	.	-	.	Parent=Os02t0795666-00
Chr02	irgsp1_rep	mRNA	33824467	33828267	.	-	.	ID=Os02t0795732-00;Name=Os02t0795732-00;Locus_id=Os02g0795732;Note=Glucoamylase%2C putatuve domain containing protein.;Transcript_evidence=AK376502 (DDBJ);ORF_evidence=B9F407 (UniProt);InterPro=Glucoamylase%2C putatuve (IPR004314);TENOR=Os02t0795732-00
Chr02	irgsp1_rep	five_prime_UTR	33828249	33828267	.	-	.	Parent=Os02t0795732-00
Chr02	irgsp1_rep	CDS	33828105	33828248	.	-	0	Parent=Os02t0795732-00
Chr02	irgsp1_rep	CDS	33827369	33827455	.	-	0	Parent=Os02t0795732-00
Chr02	irgsp1_rep	CDS	33826752	33826937	.	-	0	Parent=Os02t0795732-00
Chr02	irgsp1_rep	CDS	33825804	33826019	.	-	0	Parent=Os02t0795732-00
Chr02	irgsp1_rep	CDS	33825627	33825683	.	-	0	Parent=Os02t0795732-00
Chr02	irgsp1_rep	three_prime_UTR	33825537	33825626	.	-	.	Parent=Os02t0795732-00
Chr02	irgsp1_rep	three_prime_UTR	33824467	33824851	.	-	.	Parent=Os02t0795732-00
Chr02	irgsp1_rep	mRNA	33835931	33837683	.	+	.	ID=Os02t0795800-00;Name=Os02t0795800-00;Locus_id=Os02g0795800;Oryzabase Gene Symbol Synonym(s)=OsbHLH114;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 114;Note=Similar to BHLH transcription factor.;Transcript_evidence=EU960043 (DDBJ);ORF_evidence=D0PX88 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);Oryzabase=15394;TENOR=Os02t0795800-00;KEGG=Os02t0795800-00
Chr02	irgsp1_rep	CDS	33835931	33836356	.	+	0	Parent=Os02t0795800-00
Chr02	irgsp1_rep	CDS	33836442	33836510	.	+	0	Parent=Os02t0795800-00
Chr02	irgsp1_rep	CDS	33837336	33837683	.	+	0	Parent=Os02t0795800-00
Chr02	irgsp1_rep	mRNA	33836943	33837607	.	-	.	ID=Os02t0795850-00;Name=Os02t0795850-00;Locus_id=Os02g0795850;Note=Hypothetical gene.;Transcript_evidence=EU943900 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0795850-00;KEGG=Os02t0795850-00
Chr02	irgsp1_rep	five_prime_UTR	33837542	33837607	.	-	.	Parent=Os02t0795850-00
Chr02	irgsp1_rep	CDS	33837254	33837541	.	-	0	Parent=Os02t0795850-00
Chr02	irgsp1_rep	CDS	33837097	33837141	.	-	0	Parent=Os02t0795850-00
Chr02	irgsp1_rep	three_prime_UTR	33836943	33837096	.	-	.	Parent=Os02t0795850-00
Chr02	irgsp1_rep	mRNA	33838855	33843632	.	-	.	ID=Os02t0795900-01;Name=Os02t0795900-01;Locus_id=Os02g0795900;Oryzabase Gene Symbol Synonym(s)=OsRH1;Oryzabase Gene Name Synonym(s)=RNA helicase 1;Note=Similar to DEAD box-like RNA helicase (Fragment).;Transcript_evidence=AK105305 (DDBJ%2C Best hit);ORF_evidence=NP_193320.6 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001);NIAS_FLcDNA=001-117-A11;Oryzabase=19124;Expression=AK105305;TENOR=Os02t0795900-01;KEGG=Os02t0795900-01
Chr02	irgsp1_rep	five_prime_UTR	33843493	33843632	.	-	.	Parent=Os02t0795900-01
Chr02	irgsp1_rep	CDS	33843353	33843492	.	-	0	Parent=Os02t0795900-01
Chr02	irgsp1_rep	CDS	33842509	33842743	.	-	1	Parent=Os02t0795900-01
Chr02	irgsp1_rep	CDS	33842126	33842380	.	-	0	Parent=Os02t0795900-01
Chr02	irgsp1_rep	CDS	33841654	33841805	.	-	0	Parent=Os02t0795900-01
Chr02	irgsp1_rep	CDS	33841287	33841464	.	-	1	Parent=Os02t0795900-01
Chr02	irgsp1_rep	CDS	33840970	33841157	.	-	0	Parent=Os02t0795900-01
Chr02	irgsp1_rep	CDS	33840521	33840725	.	-	1	Parent=Os02t0795900-01
Chr02	irgsp1_rep	CDS	33839929	33840034	.	-	0	Parent=Os02t0795900-01
Chr02	irgsp1_rep	CDS	33839722	33839828	.	-	2	Parent=Os02t0795900-01
Chr02	irgsp1_rep	three_prime_UTR	33839652	33839721	.	-	.	Parent=Os02t0795900-01
Chr02	irgsp1_rep	three_prime_UTR	33838855	33839235	.	-	.	Parent=Os02t0795900-01
Chr02	irgsp1_rep	mRNA	33843885	33845213	.	+	.	ID=Os02t0796000-00;Name=Os02t0796000-00;Locus_id=Os02g0796000;Note=Similar to CPL3.;Transcript_evidence=EU964556 (DDBJ);ORF_evidence=NP_001149751.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Cellular Component: nucleus (GO:0005634),Molecular Function: phosphoprotein phosphatase activity (GO:0004721),Molecular Function: protein binding (GO:0005515);InterPro=BRCT (IPR001357),NLI interacting factor (IPR004274),FCP1-like phosphatase%2C phosphatase domain (IPR011947),HAD-like domain (IPR023214);TENOR=Os02t0796000-00;KEGG=Os02t0796000-00 (EC:3.1.3.16)
Chr02	irgsp1_rep	CDS	33843885	33845147	.	+	0	Parent=Os02t0796000-00
Chr02	irgsp1_rep	three_prime_UTR	33845148	33845213	.	+	.	Parent=Os02t0796000-00
Chr02	irgsp1_rep	mRNA	33846328	33847806	.	+	.	ID=Os02t0796100-00;Name=Os02t0796100-00;Locus_id=Os02g0796100;Note=Similar to CPL3.;Transcript_evidence=EU964556 (DDBJ);ORF_evidence=A2XAJ7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=NLI interacting factor (IPR004274),HAD-like domain (IPR023214);TENOR=Os02t0796100-00;KEGG=Os02t0796100-00
Chr02	irgsp1_rep	CDS	33846328	33847299	.	+	0	Parent=Os02t0796100-00
Chr02	irgsp1_rep	three_prime_UTR	33847300	33847806	.	+	.	Parent=Os02t0796100-00
Chr02	irgsp1_rep	mRNA	33854163	33857047	.	+	.	ID=Os02t0796300-01;Name=Os02t0796300-01;Locus_id=Os02g0796300;RAP-DB Gene Symbol Synonym(s)=OsCAF1H%2C OsCAF1-1;RAP-DB Gene Name Synonym(s)=CCR4-associated factor 1H%2C carbon cataboliterepressor 4-associated factor 1H%2C CCR4-associated factor 1-1;Oryzabase Gene Symbol Synonym(s)=OsCAF1H%2C CAF1H%2C OsCAF1-1;Oryzabase Gene Name Synonym(s)=CCR4-associated factor 1H%2C carbon catabolite repressor 4-associated factor 1H%2C CCR4-associated factor 1-1;Note=Component of the CCR4-NOTcomplex%2C Deadenylase%2C Deadenylation (poly(A) tail shortening)%2C Heat stress response;Transcript_evidence=AK119386;ORF_evidence=Q0DWT7;GO=Molecular Function: nucleic acid binding (GO:0003676),Cellular Component: nucleus (GO:0005634);InterPro=Ribonuclease CAF1 (IPR006941),Ribonuclease H-like domain (IPR012337);NIAS_FLcDNA=001-132-B12;Manual Curation=July 27%2C 2015;Literature_PMID=24805883;Oryzabase=18147;Expression=AK119386;TENOR=Os02t0796300-01;KEGG=Os02t0796300-01
Chr02	irgsp1_rep	five_prime_UTR	33854163	33854345	.	+	.	Parent=Os02t0796300-01
Chr02	irgsp1_rep	CDS	33854346	33855233	.	+	0	Parent=Os02t0796300-01
Chr02	irgsp1_rep	three_prime_UTR	33855234	33857047	.	+	.	Parent=Os02t0796300-01
Chr02	irgsp1_rep	mRNA	33854237	33855650	.	+	.	ID=Os02t0796300-02;Name=Os02t0796300-02;Locus_id=Os02g0796300;Oryzabase Gene Symbol Synonym(s)=OsCAF1H%2C CAF1H%2C OsCAF1-1;Oryzabase Gene Name Synonym(s)=CCR4-associated factor 1H%2C carbon catabolite repressor 4-associated factor 1H%2C CCR4-associated factor 1-1;Note=Similar to CCR4-NOT transcription complex subunit 7 (CCR4-associated factor 1) (CAF1) (BTG1 binding factor 1).;Transcript_evidence=AK073025 (DDBJ%2C Best hit),AK061820 (DDBJ%2C Best hit);ORF_evidence=NP_001148663.1 (RefSeq);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676);InterPro=Ribonuclease CAF1 (IPR006941),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J023149N08,001-040-B10;Oryzabase=18147;Expression=AK073025;TENOR=Os02t0796300-02;KEGG=Os02t0796300-02
Chr02	irgsp1_rep	five_prime_UTR	33854237	33854345	.	+	.	Parent=Os02t0796300-02
Chr02	irgsp1_rep	CDS	33854346	33855233	.	+	0	Parent=Os02t0796300-02
Chr02	irgsp1_rep	three_prime_UTR	33855234	33855650	.	+	.	Parent=Os02t0796300-02
Chr02	irgsp1_rep	mRNA	33857413	33859405	.	-	.	ID=Os02t0796400-00;Name=Os02t0796400-00;Locus_id=Os02g0796400;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=BT039847 (DDBJ);ORF_evidence=XP_002872270.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os02t0796400-00;KEGG=Os02t0796400-00
Chr02	irgsp1_rep	CDS	33859100	33859405	.	-	0	Parent=Os02t0796400-00
Chr02	irgsp1_rep	CDS	33857568	33858815	.	-	0	Parent=Os02t0796400-00
Chr02	irgsp1_rep	three_prime_UTR	33857413	33857567	.	-	.	Parent=Os02t0796400-00
Chr02	irgsp1_rep	mRNA	33859978	33864842	.	-	.	ID=Os02t0796500-01;Name=Os02t0796500-01;Locus_id=Os02g0796500;RAP-DB Gene Symbol Synonym(s)=RR23%2C OsRR23%2C Rrb5%2C Orr3%2C OsRR18%2C OsRRB5;RAP-DB Gene Name Synonym(s)=B-TYPE RESPONSE REGULATOR 3%2C B-type response regulator 3%2C B-type RR 5;CGSNL Gene Symbol=RR23;CGSNL Gene Name=B-TYPE RESPONSE REGULATOR 3;Oryzabase Gene Symbol Synonym(s)=OsRR23%2C Rrb5%2C Orr3%2C OsRR18%2C OsRRB5;Oryzabase Gene Name Synonym(s)=B-type response regulator 3%2C B-type RR 5;Note=B-type response regulator%2C Cytokinin signaling;Transcript_evidence=AK065276 (Genbank),BR000252 (Genbank);ORF_evidence=Q6K8X6 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: two-component response regulator activity (GO:0000156),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),CheY-like superfamily (IPR011006),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Response regulator%2C plant B-type (IPR017053),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J013002L12;Manual Curation=May 24%2C 2010;Literature_PMID=16919402,17293362;Oryzabase=8150;Expression=AK065276;TENOR=Os02t0796500-01;KEGG=Os02t0796500-01
Chr02	irgsp1_rep	five_prime_UTR	33863976	33864842	.	-	.	Parent=Os02t0796500-01
Chr02	irgsp1_rep	CDS	33863828	33863975	.	-	0	Parent=Os02t0796500-01
Chr02	irgsp1_rep	CDS	33863288	33863440	.	-	2	Parent=Os02t0796500-01
Chr02	irgsp1_rep	CDS	33862657	33863067	.	-	2	Parent=Os02t0796500-01
Chr02	irgsp1_rep	CDS	33862235	33862311	.	-	2	Parent=Os02t0796500-01
Chr02	irgsp1_rep	CDS	33860433	33861638	.	-	0	Parent=Os02t0796500-01
Chr02	irgsp1_rep	CDS	33860183	33860254	.	-	0	Parent=Os02t0796500-01
Chr02	irgsp1_rep	three_prime_UTR	33859978	33860182	.	-	.	Parent=Os02t0796500-01
Chr02	irgsp1_rep	mRNA	33859976	33864696	.	-	.	ID=Os02t0796500-02;Name=Os02t0796500-02;Locus_id=Os02g0796500;RAP-DB Gene Symbol Synonym(s)=ORR3%2C ORR3%2C B-type RR;RAP-DB Gene Name Synonym(s)=B-TYPE RESPONSE REGULATOR 3%2C B-type response regulator 3;CGSNL Gene Symbol=RR23;CGSNL Gene Name=B-TYPE RESPONSE REGULATOR 3;Oryzabase Gene Symbol Synonym(s)=OsRR23%2C Rrb5%2C Orr3%2C OsRR18%2C OsRRB5;Oryzabase Gene Name Synonym(s)=B-type response regulator 3%2C B-type RR 5;Note=B-type response regulator%2C Cytokinin signaling;Transcript_evidence=AK099581 (Genbank);ORF_evidence=Q6K8X6 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: two-component response regulator activity (GO:0000156),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),CheY-like superfamily (IPR011006),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Response regulator%2C plant B-type (IPR017053),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J013040N16;Manual Curation=May 24%2C 2010;Literature_PMID=16919402,17293362;Oryzabase=8150;Expression=AK099581;TENOR=Os02t0796500-02;KEGG=Os02t0796500-02
Chr02	irgsp1_rep	five_prime_UTR	33863976	33864696	.	-	.	Parent=Os02t0796500-02
Chr02	irgsp1_rep	CDS	33863828	33863975	.	-	0	Parent=Os02t0796500-02
Chr02	irgsp1_rep	CDS	33863288	33863440	.	-	2	Parent=Os02t0796500-02
Chr02	irgsp1_rep	CDS	33862657	33863067	.	-	2	Parent=Os02t0796500-02
Chr02	irgsp1_rep	CDS	33862235	33862311	.	-	2	Parent=Os02t0796500-02
Chr02	irgsp1_rep	CDS	33860433	33861638	.	-	0	Parent=Os02t0796500-02
Chr02	irgsp1_rep	CDS	33860183	33860254	.	-	0	Parent=Os02t0796500-02
Chr02	irgsp1_rep	three_prime_UTR	33859976	33860182	.	-	.	Parent=Os02t0796500-02
Chr02	irgsp1_rep	mRNA	33859825	33864362	.	-	.	ID=Os02t0796500-03;Name=Os02t0796500-03;Locus_id=Os02g0796500;RAP-DB Gene Symbol Synonym(s)=ORR3%2C ORR3%2C B-type RR;RAP-DB Gene Name Synonym(s)=B-TYPE RESPONSE REGULATOR 3%2C B-type response regulator 3;CGSNL Gene Symbol=RR23;CGSNL Gene Name=B-TYPE RESPONSE REGULATOR 3;Oryzabase Gene Symbol Synonym(s)=OsRR23%2C Rrb5%2C Orr3%2C OsRR18%2C OsRRB5;Oryzabase Gene Name Synonym(s)=B-type response regulator 3%2C B-type RR 5;Note=B-type response regulator%2C Cytokinin signaling;Transcript_evidence=AK120648 (Genbank);ORF_evidence=Q6K8X6 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: two-component response regulator activity (GO:0000156),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),CheY-like superfamily (IPR011006),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Response regulator%2C plant B-type (IPR017053),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J013155K09;Manual Curation=May 24%2C 2010;Literature_PMID=16919402,17293362;Oryzabase=8150;Expression=AK120648;TENOR=Os02t0796500-03
Chr02	irgsp1_rep	five_prime_UTR	33863976	33864362	.	-	.	Parent=Os02t0796500-03
Chr02	irgsp1_rep	CDS	33863828	33863975	.	-	0	Parent=Os02t0796500-03
Chr02	irgsp1_rep	CDS	33863288	33863440	.	-	2	Parent=Os02t0796500-03
Chr02	irgsp1_rep	CDS	33862657	33863067	.	-	2	Parent=Os02t0796500-03
Chr02	irgsp1_rep	CDS	33862235	33862311	.	-	2	Parent=Os02t0796500-03
Chr02	irgsp1_rep	CDS	33860433	33861638	.	-	0	Parent=Os02t0796500-03
Chr02	irgsp1_rep	CDS	33860183	33860254	.	-	0	Parent=Os02t0796500-03
Chr02	irgsp1_rep	three_prime_UTR	33859825	33860182	.	-	.	Parent=Os02t0796500-03
Chr02	irgsp1_rep	mRNA	33876653	33880507	.	-	.	ID=Os02t0796600-01;Name=Os02t0796600-01;Locus_id=Os02g0796600;Oryzabase Gene Symbol Synonym(s)=OsSTA82%2C STA82%2C OsPOP6%2C POP6;Oryzabase Gene Name Synonym(s)=Prolyl Oligopeptidase 6%2C PROLYL OLIGOPEPTIDASE 6;Note=Esterase/lipase/thioesterase domain containing protein.;Transcript_evidence=AK067973 (DDBJ%2C Best hit);ORF_evidence=NP_001151903.1 (RefSeq);NIAS_FLcDNA=J013128G24;Oryzabase=19380;Expression=AK067973;TENOR=Os02t0796600-01;KEGG=Os02t0796600-01
Chr02	irgsp1_rep	five_prime_UTR	33880412	33880507	.	-	.	Parent=Os02t0796600-01
Chr02	irgsp1_rep	five_prime_UTR	33880310	33880323	.	-	.	Parent=Os02t0796600-01
Chr02	irgsp1_rep	CDS	33880110	33880309	.	-	0	Parent=Os02t0796600-01
Chr02	irgsp1_rep	CDS	33878740	33878776	.	-	1	Parent=Os02t0796600-01
Chr02	irgsp1_rep	CDS	33877780	33878016	.	-	0	Parent=Os02t0796600-01
Chr02	irgsp1_rep	CDS	33877640	33877687	.	-	0	Parent=Os02t0796600-01
Chr02	irgsp1_rep	CDS	33877115	33877387	.	-	0	Parent=Os02t0796600-01
Chr02	irgsp1_rep	three_prime_UTR	33876653	33877114	.	-	.	Parent=Os02t0796600-01
Chr02	irgsp1_rep	mRNA	33885848	33888095	.	-	.	ID=Os02t0796700-01;Name=Os02t0796700-01;Locus_id=Os02g0796700;Oryzabase Gene Symbol Synonym(s)=OsWD40-57;Note=Similar to protein kinase family protein / WD-40 repeat family protein.;Transcript_evidence=AK112107 (DDBJ%2C Best hit);ORF_evidence=NP_194667.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=002-111-A07;Oryzabase=10738;TENOR=Os02t0796700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	33888002	33888095	.	-	.	Parent=Os02t0796700-01
Chr02	irgsp1_rep	CDS	33887018	33888001	.	-	0	Parent=Os02t0796700-01
Chr02	irgsp1_rep	CDS	33886592	33886818	.	-	0	Parent=Os02t0796700-01
Chr02	irgsp1_rep	CDS	33886393	33886492	.	-	1	Parent=Os02t0796700-01
Chr02	irgsp1_rep	CDS	33886025	33886204	.	-	0	Parent=Os02t0796700-01
Chr02	irgsp1_rep	three_prime_UTR	33885848	33886024	.	-	.	Parent=Os02t0796700-01
Chr02	irgsp1_rep	mRNA	33889645	33889855	.	+	.	ID=Os02t0796750-00;Name=Os02t0796750-00;Locus_id=Os02g0796750;Note=Non-protein coding transcript.;Transcript_evidence=EU943327 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0796750-00
Chr02	irgsp1_rep	exon	33889645	33889855	.	+	.	Parent=Os02t0796750-00
Chr02	irgsp1_rep	mRNA	33914149	33914434	.	+	.	ID=Os02t0796900-00;Name=Os02t0796900-00;Locus_id=Os02g0796900;Note=Similar to 60S ribosomal protein L39.;Transcript_evidence=D29725 (DDBJ%2C Best hit);ORF_evidence=NP_001105473.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L39e (IPR000077),Ribosomal protein L39e%2C conserved site (IPR020083),Ribosomal protein L39e domain (IPR023626);Expression=D29725;TENOR=Os02t0796900-00;KEGG=Os02t0796900-00
Chr02	irgsp1_rep	five_prime_UTR	33914149	33914149	.	+	.	Parent=Os02t0796900-00
Chr02	irgsp1_rep	CDS	33914150	33914253	.	+	0	Parent=Os02t0796900-00
Chr02	irgsp1_rep	CDS	33914366	33914414	.	+	1	Parent=Os02t0796900-00
Chr02	irgsp1_rep	three_prime_UTR	33914415	33914434	.	+	.	Parent=Os02t0796900-00
Chr02	irgsp1_rep	mRNA	33920273	33921039	.	-	.	ID=Os02t0797100-00;Name=Os02t0797100-00;Locus_id=Os02g0797100;CGSNL Gene Symbol=ERF127;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 127;Oryzabase Gene Symbol Synonym(s)=OsWR3%2C WR3%2C OsERF#127%2C OsERF127%2C AP2/EREBP#023%2C AP2/EREBP23;Oryzabase Gene Name Synonym(s)=rice wax synthesis regulatory gene 3%2C wax synthesis regulator 3%2C ethylene response factor 127%2C APETALA2/ethylene-responsive element binding protein 23;Note=Similar to Dehydration responsive element binding protein 2B (DREB2B protein).;Transcript_evidence=EU968112 (DDBJ);ORF_evidence=NP_001152327.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);Oryzabase=10195;TENOR=Os02t0797100-00;KEGG=Os02t0797100-00
Chr02	irgsp1_rep	five_prime_UTR	33920906	33921039	.	-	.	Parent=Os02t0797100-00
Chr02	irgsp1_rep	CDS	33920823	33920905	.	-	0	Parent=Os02t0797100-00
Chr02	irgsp1_rep	CDS	33920273	33920708	.	-	1	Parent=Os02t0797100-00
Chr02	irgsp1_rep	mRNA	33928348	33928995	.	+	.	ID=Os02t0797200-01;Name=Os02t0797200-01;Locus_id=Os02g0797200;Oryzabase Gene Name Synonym(s)=Ribosomal protein L39;Note=Similar to 60S ribosomal protein L39.;Transcript_evidence=AK243036 (DDBJ%2C Best hit),AK120800 (DDBJ%2C Best hit);ORF_evidence=NP_001105473.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L39e (IPR000077),Ribosomal protein L39e%2C conserved site (IPR020083),Ribosomal protein L39e domain (IPR023626);NIAS_FLcDNA=J100007H02,J023012L04;Oryzabase=17752;TENOR=Os02t0797200-01
Chr02	irgsp1_rep	five_prime_UTR	33928348	33928408	.	+	.	Parent=Os02t0797200-01
Chr02	irgsp1_rep	CDS	33928409	33928411	.	+	0	Parent=Os02t0797200-01
Chr02	irgsp1_rep	CDS	33928513	33928616	.	+	0	Parent=Os02t0797200-01
Chr02	irgsp1_rep	CDS	33928713	33928761	.	+	1	Parent=Os02t0797200-01
Chr02	irgsp1_rep	three_prime_UTR	33928762	33928995	.	+	.	Parent=Os02t0797200-01
Chr02	irgsp1_rep	mRNA	33931818	33936154	.	+	.	ID=Os02t0797300-01;Name=Os02t0797300-01;Locus_id=Os02g0797300;CGSNL Gene Symbol=AHA6;CGSNL Gene Name=H+-ATPASE 6;Oryzabase Gene Symbol Synonym(s)=OSA6%2C OsA6%2C osAHA6%2C AHA6;Oryzabase Gene Name Synonym(s)=plasma membrane H+-ATPase 6%2C PM H+-ATPase 6%2C plasma membrane H+ P-Type ATPase 6;Note=Similar to Plasma membrane H+-ATPase.;Transcript_evidence=AK121272 (DDBJ%2C Best hit);ORF_evidence=Q8RW29 (UniProt);GO=Biological Process: ATP catabolic process (GO:0006200),Biological Process: ATP biosynthetic process (GO:0006754),Biological Process: cation transport (GO:0006812),Biological Process: metabolic process (GO:0008152),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662),Molecular Function: ATPase activity (GO:0016887),Molecular Function: metal ion binding (GO:0046872);InterPro=ATPase%2C P-type%2C H+ transporting proton pump (IPR000695),ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),Haloacid dehalogenase-like hydrolase (IPR005834),ATPase%2C P-type%2C plasma-membrane proton-efflux (IPR006534),ATPase%2C P-type%2C ATPase-associated domain (IPR008250),ATPase%2C P-type phosphorylation site (IPR018303),HAD-like domain (IPR023214),ATPase%2C P-type%2C  transmembrane domain (IPR023298),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C  P-type%2C cytoplasmic transduction domain A (IPR023300);NIAS_FLcDNA=J023107A16;Oryzabase=11194;TENOR=Os02t0797300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	33931818	33931844	.	+	.	Parent=Os02t0797300-01
Chr02	irgsp1_rep	five_prime_UTR	33931925	33932074	.	+	.	Parent=Os02t0797300-01
Chr02	irgsp1_rep	CDS	33932075	33934093	.	+	0	Parent=Os02t0797300-01
Chr02	irgsp1_rep	CDS	33934197	33934262	.	+	0	Parent=Os02t0797300-01
Chr02	irgsp1_rep	CDS	33934470	33934942	.	+	0	Parent=Os02t0797300-01
Chr02	irgsp1_rep	CDS	33935756	33935852	.	+	1	Parent=Os02t0797300-01
Chr02	irgsp1_rep	three_prime_UTR	33935853	33936154	.	+	.	Parent=Os02t0797300-01
Chr02	irgsp1_rep	mRNA	33936229	33940506	.	-	.	ID=Os02t0797400-01;Name=Os02t0797400-01;Locus_id=Os02g0797400;CGSNL Gene Symbol=MCM5;CGSNL Gene Name=MINI-CHROMOSOME MAINTENANCE PROTEIN 5;Oryzabase Gene Symbol Synonym(s)=OsMCM5;Note=MCM family protein.;Transcript_evidence=AK073980 (DDBJ%2C Best hit);ORF_evidence=B3GNI3 (UniProt);GO=Biological Process: DNA replication (GO:0006260),Biological Process: DNA-dependent DNA replication initiation (GO:0006270),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP binding (GO:0005524);InterPro=Mini-Chromosome maintenance%2C DNA-dependent ATPase (IPR001208),Mini-Chromosome maintenance complex protein 5 (IPR008048),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),Mini-Chromosome maintenance%2C conserved site (IPR018525);NIAS_FLcDNA=J033076G02;Oryzabase=9199;Expression=AK073980;TENOR=Os02t0797400-01;KEGG=Os02t0797400-01
Chr02	irgsp1_rep	five_prime_UTR	33940413	33940506	.	-	.	Parent=Os02t0797400-01
Chr02	irgsp1_rep	CDS	33940246	33940412	.	-	0	Parent=Os02t0797400-01
Chr02	irgsp1_rep	CDS	33940040	33940154	.	-	1	Parent=Os02t0797400-01
Chr02	irgsp1_rep	CDS	33939810	33939953	.	-	0	Parent=Os02t0797400-01
Chr02	irgsp1_rep	CDS	33939556	33939735	.	-	0	Parent=Os02t0797400-01
Chr02	irgsp1_rep	CDS	33939367	33939465	.	-	0	Parent=Os02t0797400-01
Chr02	irgsp1_rep	CDS	33939128	33939255	.	-	0	Parent=Os02t0797400-01
Chr02	irgsp1_rep	CDS	33938928	33939033	.	-	1	Parent=Os02t0797400-01
Chr02	irgsp1_rep	CDS	33938708	33938842	.	-	0	Parent=Os02t0797400-01
Chr02	irgsp1_rep	CDS	33938526	33938603	.	-	0	Parent=Os02t0797400-01
Chr02	irgsp1_rep	CDS	33938351	33938455	.	-	0	Parent=Os02t0797400-01
Chr02	irgsp1_rep	CDS	33938175	33938266	.	-	0	Parent=Os02t0797400-01
Chr02	irgsp1_rep	CDS	33937926	33938058	.	-	1	Parent=Os02t0797400-01
Chr02	irgsp1_rep	CDS	33937712	33937807	.	-	0	Parent=Os02t0797400-01
Chr02	irgsp1_rep	CDS	33937549	33937643	.	-	0	Parent=Os02t0797400-01
Chr02	irgsp1_rep	CDS	33937367	33937457	.	-	1	Parent=Os02t0797400-01
Chr02	irgsp1_rep	CDS	33937181	33937290	.	-	0	Parent=Os02t0797400-01
Chr02	irgsp1_rep	CDS	33936888	33937017	.	-	1	Parent=Os02t0797400-01
Chr02	irgsp1_rep	CDS	33936706	33936807	.	-	0	Parent=Os02t0797400-01
Chr02	irgsp1_rep	CDS	33936541	33936624	.	-	0	Parent=Os02t0797400-01
Chr02	irgsp1_rep	three_prime_UTR	33936229	33936540	.	-	.	Parent=Os02t0797400-01
Chr02	irgsp1_rep	mRNA	33938977	33940417	.	+	.	ID=Os02t0797425-00;Name=Os02t0797425-00;Locus_id=Os02g0797425;Note=Hypothetical gene.;Transcript_evidence=BT019047 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0797425-00;KEGG=Os02t0797425-00
Chr02	irgsp1_rep	five_prime_UTR	33938977	33939033	.	+	.	Parent=Os02t0797425-00
Chr02	irgsp1_rep	five_prime_UTR	33939128	33939201	.	+	.	Parent=Os02t0797425-00
Chr02	irgsp1_rep	CDS	33939202	33939257	.	+	0	Parent=Os02t0797425-00
Chr02	irgsp1_rep	CDS	33939372	33939465	.	+	1	Parent=Os02t0797425-00
Chr02	irgsp1_rep	CDS	33939556	33939726	.	+	0	Parent=Os02t0797425-00
Chr02	irgsp1_rep	CDS	33939803	33939808	.	+	0	Parent=Os02t0797425-00
Chr02	irgsp1_rep	three_prime_UTR	33939809	33939945	.	+	.	Parent=Os02t0797425-00
Chr02	irgsp1_rep	three_prime_UTR	33940033	33940138	.	+	.	Parent=Os02t0797425-00
Chr02	irgsp1_rep	three_prime_UTR	33940231	33940417	.	+	.	Parent=Os02t0797425-00
Chr02	irgsp1_rep	mRNA	33942024	33946388	.	+	.	ID=Os02t0797500-01;Name=Os02t0797500-01;Locus_id=Os02g0797500;Oryzabase Gene Symbol Synonym(s)=AST;Oryzabase Gene Name Synonym(s)=Aspartate aminotransferase;Note=Similar to Plastidic aspartate aminotransferase.;Transcript_evidence=AK072426 (DDBJ%2C Best hit);ORF_evidence=B8AEH4 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transaminase activity (GO:0008483),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aspartate/other aminotransferase (IPR000796),Aminotransferases%2C class-I%2C pyridoxal-phosphate-binding site (IPR004838),Aminotransferase%2C class I/classII (IPR004839),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J023091M09;Oryzabase=16724;Expression=AK072426;TENOR=Os02t0797500-01;KEGG=Os02t0797500-01 (EC:2.6.1.1)
Chr02	irgsp1_rep	five_prime_UTR	33942024	33942267	.	+	.	Parent=Os02t0797500-01
Chr02	irgsp1_rep	CDS	33942268	33942331	.	+	0	Parent=Os02t0797500-01
Chr02	irgsp1_rep	CDS	33942435	33942496	.	+	2	Parent=Os02t0797500-01
Chr02	irgsp1_rep	CDS	33943143	33943337	.	+	0	Parent=Os02t0797500-01
Chr02	irgsp1_rep	CDS	33943414	33943452	.	+	0	Parent=Os02t0797500-01
Chr02	irgsp1_rep	CDS	33943568	33943657	.	+	0	Parent=Os02t0797500-01
Chr02	irgsp1_rep	CDS	33943787	33943895	.	+	0	Parent=Os02t0797500-01
Chr02	irgsp1_rep	CDS	33944000	33944109	.	+	2	Parent=Os02t0797500-01
Chr02	irgsp1_rep	CDS	33944341	33944484	.	+	0	Parent=Os02t0797500-01
Chr02	irgsp1_rep	CDS	33944566	33944732	.	+	0	Parent=Os02t0797500-01
Chr02	irgsp1_rep	CDS	33945608	33945872	.	+	1	Parent=Os02t0797500-01
Chr02	irgsp1_rep	CDS	33946014	33946145	.	+	0	Parent=Os02t0797500-01
Chr02	irgsp1_rep	three_prime_UTR	33946146	33946388	.	+	.	Parent=Os02t0797500-01
Chr02	irgsp1_rep	mRNA	33942207	33946388	.	+	.	ID=Os02t0797500-02;Name=Os02t0797500-02;Locus_id=Os02g0797500;Oryzabase Gene Symbol Synonym(s)=AST;Oryzabase Gene Name Synonym(s)=Aspartate aminotransferase;Note=Similar to Plastidic aspartate aminotransferase.;Transcript_evidence=AK105059 (DDBJ%2C Best hit);ORF_evidence=B8AEH4 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transaminase activity (GO:0008483),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aspartate/other aminotransferase (IPR000796),Aminotransferases%2C class-I%2C pyridoxal-phosphate-binding site (IPR004838),Aminotransferase%2C class I/classII (IPR004839),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=001-043-G01;Oryzabase=16724;Expression=AK105059;TENOR=Os02t0797500-02;KEGG=Os02t0797500-02 (EC:2.6.1.1)
Chr02	irgsp1_rep	five_prime_UTR	33942207	33942267	.	+	.	Parent=Os02t0797500-02
Chr02	irgsp1_rep	CDS	33942268	33942331	.	+	0	Parent=Os02t0797500-02
Chr02	irgsp1_rep	CDS	33942435	33942496	.	+	2	Parent=Os02t0797500-02
Chr02	irgsp1_rep	CDS	33943143	33943337	.	+	0	Parent=Os02t0797500-02
Chr02	irgsp1_rep	CDS	33943414	33943452	.	+	0	Parent=Os02t0797500-02
Chr02	irgsp1_rep	CDS	33943568	33943657	.	+	0	Parent=Os02t0797500-02
Chr02	irgsp1_rep	CDS	33943787	33943895	.	+	0	Parent=Os02t0797500-02
Chr02	irgsp1_rep	CDS	33944000	33944109	.	+	2	Parent=Os02t0797500-02
Chr02	irgsp1_rep	CDS	33944341	33944484	.	+	0	Parent=Os02t0797500-02
Chr02	irgsp1_rep	CDS	33944566	33944732	.	+	0	Parent=Os02t0797500-02
Chr02	irgsp1_rep	CDS	33945608	33945872	.	+	1	Parent=Os02t0797500-02
Chr02	irgsp1_rep	CDS	33946014	33946145	.	+	0	Parent=Os02t0797500-02
Chr02	irgsp1_rep	three_prime_UTR	33946146	33946388	.	+	.	Parent=Os02t0797500-02
Chr02	irgsp1_rep	mRNA	33953313	33954803	.	+	.	ID=Os02t0797600-03;Name=Os02t0797600-03;Locus_id=Os02g0797600;Note=Conserved hypothetical protein.;Transcript_evidence=AK120644 (DDBJ%2C Best hit),AK060857 (DDBJ%2C Best hit),AK098882 (DDBJ%2C Best hit),AK104474 (DDBJ%2C Best hit);ORF_evidence=A2XAL1 (UniProt);NIAS_FLcDNA=J013155B15,001-034-F05,J013001F21,006-301-E07;Expression=AK120644;TENOR=Os02t0797600-03;KEGG=Os02t0797600-03
Chr02	irgsp1_rep	five_prime_UTR	33953313	33953456	.	+	.	Parent=Os02t0797600-03
Chr02	irgsp1_rep	CDS	33953457	33954113	.	+	0	Parent=Os02t0797600-03
Chr02	irgsp1_rep	three_prime_UTR	33954114	33954803	.	+	.	Parent=Os02t0797600-03
Chr02	irgsp1_rep	mRNA	33957339	33959749	.	-	.	ID=Os02t0797700-01;Name=Os02t0797700-01;Locus_id=Os02g0797700;Note=Nonaspanin (TM9SF) family protein.;Transcript_evidence=AK069053 (DDBJ%2C Best hit);ORF_evidence=B6ST61 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Nonaspanin (TM9SF) (IPR004240);NIAS_FLcDNA=J023004J10;Expression=AK069053;TENOR=Os02t0797700-01;KEGG=Os02t0797700-01
Chr02	irgsp1_rep	five_prime_UTR	33959543	33959749	.	-	.	Parent=Os02t0797700-01
Chr02	irgsp1_rep	CDS	33957545	33959542	.	-	0	Parent=Os02t0797700-01
Chr02	irgsp1_rep	three_prime_UTR	33957339	33957544	.	-	.	Parent=Os02t0797700-01
Chr02	irgsp1_rep	mRNA	33966119	33969274	.	+	.	ID=Os02t0798000-01;Name=Os02t0798000-01;Locus_id=Os02g0798000;Note=Hypothetical conserved gene.;Transcript_evidence=AK102986 (DDBJ%2C Best hit);ORF_evidence=B9F418 (UniProt);NIAS_FLcDNA=J033116C08;Expression=AK102986;TENOR=Os02t0798000-01;KEGG=Os02t0798000-01
Chr02	irgsp1_rep	CDS	33966119	33966339	.	+	0	Parent=Os02t0798000-01
Chr02	irgsp1_rep	CDS	33966516	33966674	.	+	1	Parent=Os02t0798000-01
Chr02	irgsp1_rep	CDS	33966784	33966842	.	+	1	Parent=Os02t0798000-01
Chr02	irgsp1_rep	CDS	33967389	33967496	.	+	2	Parent=Os02t0798000-01
Chr02	irgsp1_rep	CDS	33967680	33967687	.	+	2	Parent=Os02t0798000-01
Chr02	irgsp1_rep	three_prime_UTR	33967688	33967723	.	+	.	Parent=Os02t0798000-01
Chr02	irgsp1_rep	three_prime_UTR	33967840	33968022	.	+	.	Parent=Os02t0798000-01
Chr02	irgsp1_rep	three_prime_UTR	33968122	33968199	.	+	.	Parent=Os02t0798000-01
Chr02	irgsp1_rep	three_prime_UTR	33968564	33968603	.	+	.	Parent=Os02t0798000-01
Chr02	irgsp1_rep	three_prime_UTR	33968687	33968741	.	+	.	Parent=Os02t0798000-01
Chr02	irgsp1_rep	three_prime_UTR	33968964	33969274	.	+	.	Parent=Os02t0798000-01
Chr02	irgsp1_rep	mRNA	33971301	33972910	.	+	.	ID=Os02t0798100-00;Name=Os02t0798100-00;Locus_id=Os02g0798100;Note=Similar to predicted protein.;Transcript_evidence=AK366222 (DDBJ);ORF_evidence=Q599H9 (UniProt);GO=Biological Process: oligosaccharide biosynthetic process (GO:0009312),Cellular Component: Golgi stack (GO:0005795),Cellular Component: integral to membrane (GO:0016021),Molecular Function: alpha-1%2C6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity (GO:0008455);InterPro=N-acetylglucosaminyltransferase II (IPR007754);TENOR=Os02t0798100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	33971301	33971369	.	+	.	Parent=Os02t0798100-00
Chr02	irgsp1_rep	CDS	33971370	33972686	.	+	0	Parent=Os02t0798100-00
Chr02	irgsp1_rep	three_prime_UTR	33972687	33972910	.	+	.	Parent=Os02t0798100-00
Chr02	irgsp1_rep	mRNA	33976614	33978362	.	+	.	ID=Os02t0798200-01;Name=Os02t0798200-01;Locus_id=Os02g0798200;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK061459 (DDBJ%2C Best hit),AK104480 (DDBJ%2C Best hit);ORF_evidence=NP_001150294.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=006-308-A03,006-301-G04;TENOR=Os02t0798200-01
Chr02	irgsp1_rep	five_prime_UTR	33976614	33976947	.	+	.	Parent=Os02t0798200-01
Chr02	irgsp1_rep	CDS	33976948	33977106	.	+	0	Parent=Os02t0798200-01
Chr02	irgsp1_rep	CDS	33977225	33977355	.	+	0	Parent=Os02t0798200-01
Chr02	irgsp1_rep	CDS	33977632	33977974	.	+	1	Parent=Os02t0798200-01
Chr02	irgsp1_rep	three_prime_UTR	33977975	33978362	.	+	.	Parent=Os02t0798200-01
Chr02	irgsp1_rep	mRNA	33982930	33983620	.	-	.	ID=Os02t0798400-01;Name=Os02t0798400-01;Locus_id=Os02g0798400;Note=Similar to Uncharacterized protein OsI_009113.;Transcript_evidence=AK120999 (DDBJ%2C Best hit);ORF_evidence=A2XAM0 (UniProt);NIAS_FLcDNA=J023044J18;Expression=AK120999;TENOR=Os02t0798400-01;KEGG=Os02t0798400-01
Chr02	irgsp1_rep	five_prime_UTR	33983579	33983620	.	-	.	Parent=Os02t0798400-01
Chr02	irgsp1_rep	CDS	33983189	33983578	.	-	0	Parent=Os02t0798400-01
Chr02	irgsp1_rep	three_prime_UTR	33982930	33983188	.	-	.	Parent=Os02t0798400-01
Chr02	irgsp1_rep	mRNA	33987027	33987712	.	-	.	ID=Os02t0798501-00;Name=Os02t0798501-00;Locus_id=Os02g0798501;Note=Similar to Uncharacterized protein OsI_009113.;Transcript_evidence=CT830734 (DDBJ%2C Best hit);ORF_evidence=A2XAM0 (UniProt);TENOR=Os02t0798501-00;KEGG=Os02t0798501-00
Chr02	irgsp1_rep	five_prime_UTR	33987673	33987712	.	-	.	Parent=Os02t0798501-00
Chr02	irgsp1_rep	CDS	33987283	33987672	.	-	0	Parent=Os02t0798501-00
Chr02	irgsp1_rep	three_prime_UTR	33987027	33987282	.	-	.	Parent=Os02t0798501-00
Chr02	irgsp1_rep	mRNA	33991084	33995753	.	-	.	ID=Os02t0798600-01;Name=Os02t0798600-01;Locus_id=Os02g0798600;Note=Similar to Zinc finger%2C C3HC4 type family protein.;Transcript_evidence=AK061689 (DDBJ%2C Best hit);ORF_evidence=B6SKD0 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=001-037-B09;TENOR=Os02t0798600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	33995753	33995753	.	-	.	Parent=Os02t0798600-01
Chr02	irgsp1_rep	CDS	33995024	33995752	.	-	0	Parent=Os02t0798600-01
Chr02	irgsp1_rep	CDS	33994461	33994637	.	-	0	Parent=Os02t0798600-01
Chr02	irgsp1_rep	CDS	33993569	33993708	.	-	0	Parent=Os02t0798600-01
Chr02	irgsp1_rep	CDS	33992343	33992453	.	-	1	Parent=Os02t0798600-01
Chr02	irgsp1_rep	CDS	33991405	33991450	.	-	1	Parent=Os02t0798600-01
Chr02	irgsp1_rep	three_prime_UTR	33991084	33991404	.	-	.	Parent=Os02t0798600-01
Chr02	irgsp1_rep	mRNA	34000557	34007221	.	+	.	ID=Os02t0798700-01;Name=Os02t0798700-01;Locus_id=Os02g0798700;Note=Neurochondrin domain containing protein.;Transcript_evidence=AK101070 (DDBJ%2C Best hit),AK103079 (DDBJ%2C Best hit);ORF_evidence=A3ACB8 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Neurochondrin (IPR008709),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033023P18,J033118E17;TENOR=Os02t0798700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	34000557	34000557	.	+	.	Parent=Os02t0798700-01
Chr02	irgsp1_rep	CDS	34000558	34000671	.	+	0	Parent=Os02t0798700-01
Chr02	irgsp1_rep	CDS	34000756	34000972	.	+	0	Parent=Os02t0798700-01
Chr02	irgsp1_rep	CDS	34001065	34001221	.	+	2	Parent=Os02t0798700-01
Chr02	irgsp1_rep	CDS	34001442	34001578	.	+	1	Parent=Os02t0798700-01
Chr02	irgsp1_rep	CDS	34001894	34001997	.	+	2	Parent=Os02t0798700-01
Chr02	irgsp1_rep	CDS	34002100	34002195	.	+	0	Parent=Os02t0798700-01
Chr02	irgsp1_rep	CDS	34002325	34002415	.	+	0	Parent=Os02t0798700-01
Chr02	irgsp1_rep	CDS	34002891	34003011	.	+	2	Parent=Os02t0798700-01
Chr02	irgsp1_rep	CDS	34003086	34003282	.	+	1	Parent=Os02t0798700-01
Chr02	irgsp1_rep	CDS	34004112	34004212	.	+	2	Parent=Os02t0798700-01
Chr02	irgsp1_rep	CDS	34004285	34004340	.	+	0	Parent=Os02t0798700-01
Chr02	irgsp1_rep	CDS	34005196	34005285	.	+	1	Parent=Os02t0798700-01
Chr02	irgsp1_rep	CDS	34005372	34005471	.	+	1	Parent=Os02t0798700-01
Chr02	irgsp1_rep	CDS	34005701	34005802	.	+	0	Parent=Os02t0798700-01
Chr02	irgsp1_rep	CDS	34005879	34005948	.	+	0	Parent=Os02t0798700-01
Chr02	irgsp1_rep	CDS	34006203	34006357	.	+	2	Parent=Os02t0798700-01
Chr02	irgsp1_rep	CDS	34006451	34006502	.	+	0	Parent=Os02t0798700-01
Chr02	irgsp1_rep	CDS	34006630	34006700	.	+	2	Parent=Os02t0798700-01
Chr02	irgsp1_rep	three_prime_UTR	34006701	34006807	.	+	.	Parent=Os02t0798700-01
Chr02	irgsp1_rep	three_prime_UTR	34006891	34007221	.	+	.	Parent=Os02t0798700-01
Chr02	irgsp1_rep	mRNA	34009244	34010089	.	-	.	ID=Os02t0798800-00;Name=Os02t0798800-00;Locus_id=Os02g0798800;Note=Leucine-rich repeat%2C cysteine-containing subtype containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01LI6 (UniProt);TENOR=Os02t0798800-00;KEGG=Os02t0798800-00
Chr02	irgsp1_rep	CDS	34009244	34010089	.	-	0	Parent=Os02t0798800-00
Chr02	irgsp1_rep	mRNA	34015499	34017287	.	-	.	ID=Os02t0798900-01;Name=Os02t0798900-01;Locus_id=Os02g0798900;Oryzabase Gene Symbol Synonym(s)=Os_F0752;Note=Similar to F-box domain containing protein.;Transcript_evidence=AK068929 (DDBJ%2C Best hit);ORF_evidence=Q2QPJ9 (UniProt);NIAS_FLcDNA=J013169B16;Oryzabase=17491;Expression=AK068929;TENOR=Os02t0798900-01;KEGG=Os02t0798900-01
Chr02	irgsp1_rep	five_prime_UTR	34017057	34017287	.	-	.	Parent=Os02t0798900-01
Chr02	irgsp1_rep	five_prime_UTR	34016365	34016424	.	-	.	Parent=Os02t0798900-01
Chr02	irgsp1_rep	CDS	34015741	34016364	.	-	0	Parent=Os02t0798900-01
Chr02	irgsp1_rep	three_prime_UTR	34015499	34015740	.	-	.	Parent=Os02t0798900-01
Chr02	irgsp1_rep	mRNA	34026274	34030282	.	+	.	ID=Os02t0799000-01;Name=Os02t0799000-01;Locus_id=Os02g0799000;Oryzabase Gene Symbol Synonym(s)=OsPP2C27%2C PP2C27%2C OsPP40;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C27%2C protein phosphatase 2C 27%2C protein phosphatase 40;Note=Similar to DNA-binding protein phosphatase 2C.;Transcript_evidence=AK099720 (DDBJ%2C Best hit);ORF_evidence=NP_001149407.1 (RefSeq);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J013088F12;Oryzabase=17903;Expression=AK099720;TENOR=Os02t0799000-01;KEGG=Os02t0799000-01
Chr02	irgsp1_rep	five_prime_UTR	34026274	34026505	.	+	.	Parent=Os02t0799000-01
Chr02	irgsp1_rep	CDS	34026506	34026589	.	+	0	Parent=Os02t0799000-01
Chr02	irgsp1_rep	CDS	34028355	34028555	.	+	0	Parent=Os02t0799000-01
Chr02	irgsp1_rep	CDS	34028819	34029030	.	+	0	Parent=Os02t0799000-01
Chr02	irgsp1_rep	CDS	34029353	34029920	.	+	1	Parent=Os02t0799000-01
Chr02	irgsp1_rep	three_prime_UTR	34029921	34030282	.	+	.	Parent=Os02t0799000-01
Chr02	irgsp1_rep	mRNA	34030829	34034442	.	-	.	ID=Os02t0799100-01;Name=Os02t0799100-01;Locus_id=Os02g0799100;CGSNL Gene Symbol=SGO1;CGSNL Gene Name=SHUGOSHIN 1;Oryzabase Gene Symbol Synonym(s)=OsSGO1;Oryzabase Gene Name Synonym(s)=shugoshin 1%2C SHUGOSHIN1;Note=Hypothetical conserved gene.;Transcript_evidence=AK240949 (DDBJ%2C Best hit);ORF_evidence=E3VXF2 (UniProt);GO=Biological Process: meiotic Chromosome segregation (GO:0045132),Cellular Component: Chromosome%2C centromeric region (GO:0000775),Cellular Component: nucleus (GO:0005634);InterPro=Shugoshin%2C C-terminal (IPR011515);NIAS_FLcDNA=J065043N05;Oryzabase=11179;TENOR=Os02t0799100-01;KEGG=Os02t0799100-01
Chr02	irgsp1_rep	five_prime_UTR	34034288	34034442	.	-	.	Parent=Os02t0799100-01
Chr02	irgsp1_rep	CDS	34034272	34034287	.	-	0	Parent=Os02t0799100-01
Chr02	irgsp1_rep	CDS	34034031	34034179	.	-	2	Parent=Os02t0799100-01
Chr02	irgsp1_rep	CDS	34033845	34033882	.	-	0	Parent=Os02t0799100-01
Chr02	irgsp1_rep	CDS	34033632	34033740	.	-	1	Parent=Os02t0799100-01
Chr02	irgsp1_rep	CDS	34033388	34033411	.	-	0	Parent=Os02t0799100-01
Chr02	irgsp1_rep	CDS	34033231	34033299	.	-	0	Parent=Os02t0799100-01
Chr02	irgsp1_rep	CDS	34033108	34033155	.	-	0	Parent=Os02t0799100-01
Chr02	irgsp1_rep	CDS	34032919	34033009	.	-	0	Parent=Os02t0799100-01
Chr02	irgsp1_rep	CDS	34032669	34032723	.	-	2	Parent=Os02t0799100-01
Chr02	irgsp1_rep	CDS	34032451	34032567	.	-	1	Parent=Os02t0799100-01
Chr02	irgsp1_rep	CDS	34032206	34032356	.	-	1	Parent=Os02t0799100-01
Chr02	irgsp1_rep	CDS	34032048	34032131	.	-	0	Parent=Os02t0799100-01
Chr02	irgsp1_rep	CDS	34031911	34031952	.	-	0	Parent=Os02t0799100-01
Chr02	irgsp1_rep	CDS	34031736	34031812	.	-	0	Parent=Os02t0799100-01
Chr02	irgsp1_rep	CDS	34031520	34031654	.	-	1	Parent=Os02t0799100-01
Chr02	irgsp1_rep	CDS	34031147	34031441	.	-	1	Parent=Os02t0799100-01
Chr02	irgsp1_rep	three_prime_UTR	34030829	34031146	.	-	.	Parent=Os02t0799100-01
Chr02	irgsp1_rep	mRNA	34030829	34034541	.	-	.	ID=Os02t0799100-02;Name=Os02t0799100-02;Locus_id=Os02g0799100;RAP-DB Gene Symbol Synonym(s)=OsSGO1%2C SGO1;RAP-DB Gene Name Synonym(s)=shugoshin 1;CGSNL Gene Symbol=SGO1;CGSNL Gene Name=SHUGOSHIN 1;Oryzabase Gene Symbol Synonym(s)=OsSGO1;Oryzabase Gene Name Synonym(s)=shugoshin 1%2C SHUGOSHIN1;Note=Shugoshin%2C Synaptonemal complex stabilization%2C Protection of centromeric cohesion in meiosis;Transcript_evidence=HQ333477;ORF_evidence=E3VXF2;GO=Biological Process: meiotic Chromosome segregation (GO:0045132),Cellular Component: Chromosome%2C centromeric region (GO:0000775),Cellular Component: nucleus (GO:0005634);InterPro=Shugoshin%2C C-terminal (IPR011515);Manual Curation=April 9%2C 2015;Literature_PMID=21615569;Oryzabase=11179
Chr02	irgsp1_rep	five_prime_UTR	34034288	34034541	.	-	.	Parent=Os02t0799100-02
Chr02	irgsp1_rep	CDS	34034272	34034287	.	-	0	Parent=Os02t0799100-02
Chr02	irgsp1_rep	CDS	34034031	34034179	.	-	2	Parent=Os02t0799100-02
Chr02	irgsp1_rep	CDS	34033845	34033882	.	-	0	Parent=Os02t0799100-02
Chr02	irgsp1_rep	CDS	34033632	34033740	.	-	1	Parent=Os02t0799100-02
Chr02	irgsp1_rep	CDS	34033388	34033411	.	-	0	Parent=Os02t0799100-02
Chr02	irgsp1_rep	CDS	34033231	34033299	.	-	0	Parent=Os02t0799100-02
Chr02	irgsp1_rep	CDS	34033108	34033155	.	-	0	Parent=Os02t0799100-02
Chr02	irgsp1_rep	CDS	34032919	34033009	.	-	0	Parent=Os02t0799100-02
Chr02	irgsp1_rep	CDS	34032669	34032726	.	-	2	Parent=Os02t0799100-02
Chr02	irgsp1_rep	CDS	34032451	34032567	.	-	1	Parent=Os02t0799100-02
Chr02	irgsp1_rep	CDS	34032206	34032356	.	-	1	Parent=Os02t0799100-02
Chr02	irgsp1_rep	CDS	34032048	34032131	.	-	0	Parent=Os02t0799100-02
Chr02	irgsp1_rep	CDS	34031736	34031812	.	-	0	Parent=Os02t0799100-02
Chr02	irgsp1_rep	CDS	34031520	34031654	.	-	1	Parent=Os02t0799100-02
Chr02	irgsp1_rep	CDS	34031147	34031441	.	-	1	Parent=Os02t0799100-02
Chr02	irgsp1_rep	three_prime_UTR	34030829	34031146	.	-	.	Parent=Os02t0799100-02
Chr02	irgsp1_rep	mRNA	34041661	34046263	.	+	.	ID=Os02t0799300-01;Name=Os02t0799300-01;Locus_id=Os02g0799300;Note=Similar to H0306F03.12 protein.;Transcript_evidence=AK064917 (DDBJ%2C Best hit);ORF_evidence=Q25A63 (UniProt);NIAS_FLcDNA=J013000M19;Expression=AK064917;TENOR=Os02t0799300-01;KEGG=Os02t0799300-01
Chr02	irgsp1_rep	five_prime_UTR	34041661	34041768	.	+	.	Parent=Os02t0799300-01
Chr02	irgsp1_rep	CDS	34041769	34041892	.	+	0	Parent=Os02t0799300-01
Chr02	irgsp1_rep	CDS	34042763	34042935	.	+	2	Parent=Os02t0799300-01
Chr02	irgsp1_rep	CDS	34043012	34043193	.	+	0	Parent=Os02t0799300-01
Chr02	irgsp1_rep	CDS	34043296	34043580	.	+	1	Parent=Os02t0799300-01
Chr02	irgsp1_rep	CDS	34043667	34043725	.	+	1	Parent=Os02t0799300-01
Chr02	irgsp1_rep	CDS	34043856	34043892	.	+	2	Parent=Os02t0799300-01
Chr02	irgsp1_rep	CDS	34043992	34044063	.	+	1	Parent=Os02t0799300-01
Chr02	irgsp1_rep	CDS	34045120	34045444	.	+	1	Parent=Os02t0799300-01
Chr02	irgsp1_rep	CDS	34045534	34045917	.	+	0	Parent=Os02t0799300-01
Chr02	irgsp1_rep	three_prime_UTR	34045918	34046263	.	+	.	Parent=Os02t0799300-01
Chr02	irgsp1_rep	mRNA	34043101	34046206	.	+	.	ID=Os02t0799300-02;Name=Os02t0799300-02;Locus_id=Os02g0799300;Note=Similar to predicted protein.;Transcript_evidence=AK061912 (DDBJ%2C Best hit);ORF_evidence=Q25A63 (UniProt);NIAS_FLcDNA=001-042-A07;Expression=AK061912;TENOR=Os02t0799300-02;KEGG=Os02t0799300-02
Chr02	irgsp1_rep	five_prime_UTR	34043101	34043101	.	+	.	Parent=Os02t0799300-02
Chr02	irgsp1_rep	CDS	34043102	34043193	.	+	0	Parent=Os02t0799300-02
Chr02	irgsp1_rep	CDS	34043296	34043580	.	+	1	Parent=Os02t0799300-02
Chr02	irgsp1_rep	CDS	34043667	34043725	.	+	1	Parent=Os02t0799300-02
Chr02	irgsp1_rep	CDS	34043856	34043892	.	+	2	Parent=Os02t0799300-02
Chr02	irgsp1_rep	CDS	34043992	34044063	.	+	1	Parent=Os02t0799300-02
Chr02	irgsp1_rep	CDS	34045120	34045444	.	+	1	Parent=Os02t0799300-02
Chr02	irgsp1_rep	CDS	34045534	34045917	.	+	0	Parent=Os02t0799300-02
Chr02	irgsp1_rep	three_prime_UTR	34045918	34046206	.	+	.	Parent=Os02t0799300-02
Chr02	irgsp1_rep	mRNA	34052155	34053030	.	+	.	ID=Os02t0799400-01;Name=Os02t0799400-01;Locus_id=Os02g0799400;Note=Conserved hypothetical protein.;Transcript_evidence=AK108294 (DDBJ%2C Best hit);ORF_evidence=B9FDI4 (UniProt);NIAS_FLcDNA=002-141-E04;TENOR=Os02t0799400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	34052155	34052581	.	+	.	Parent=Os02t0799400-01
Chr02	irgsp1_rep	CDS	34052582	34052806	.	+	0	Parent=Os02t0799400-01
Chr02	irgsp1_rep	three_prime_UTR	34052807	34053030	.	+	.	Parent=Os02t0799400-01
Chr02	irgsp1_rep	mRNA	34053182	34053790	.	+	.	ID=Os02t0799600-01;Name=Os02t0799600-01;Locus_id=Os02g0799600;Note=Conserved hypothetical protein.;Transcript_evidence=AK063712 (DDBJ%2C Best hit);ORF_evidence=B8AED7 (UniProt);NIAS_FLcDNA=001-120-B12;Expression=AK063712;TENOR=Os02t0799600-01;KEGG=Os02t0799600-01
Chr02	irgsp1_rep	five_prime_UTR	34053182	34053231	.	+	.	Parent=Os02t0799600-01
Chr02	irgsp1_rep	CDS	34053232	34053567	.	+	0	Parent=Os02t0799600-01
Chr02	irgsp1_rep	three_prime_UTR	34053568	34053790	.	+	.	Parent=Os02t0799600-01
Chr02	irgsp1_rep	mRNA	34058141	34059033	.	-	.	ID=Os02t0799700-01;Name=Os02t0799700-01;Locus_id=Os02g0799700;Note=Similar to serine-rich protein.;Transcript_evidence=AK065260 (DDBJ%2C Best hit);ORF_evidence=NP_001152496.1 (RefSeq);NIAS_FLcDNA=J013002J20;Expression=AK065260;TENOR=Os02t0799700-01;KEGG=Os02t0799700-01
Chr02	irgsp1_rep	five_prime_UTR	34058939	34059033	.	-	.	Parent=Os02t0799700-01
Chr02	irgsp1_rep	CDS	34058417	34058938	.	-	0	Parent=Os02t0799700-01
Chr02	irgsp1_rep	three_prime_UTR	34058141	34058416	.	-	.	Parent=Os02t0799700-01
Chr02	irgsp1_rep	mRNA	34071030	34075500	.	+	.	ID=Os02t0800000-01;Name=Os02t0800000-01;Locus_id=Os02g0800000;Note=PRLI-interacting factor L (Fragment).;Transcript_evidence=AK243402 (DDBJ%2C Best hit);ORF_evidence=NP_178163.1 (RefSeq);InterPro=Cobalamin (vitamin B12) biosynthesis CobW-like (IPR003495),Cobalamin (vitamin B12) biosynthesis CobW-like%2C C-terminal (IPR011629);NIAS_FLcDNA=J100064O18;TENOR=Os02t0800000-01;KEGG=Os02t0800000-01
Chr02	irgsp1_rep	five_prime_UTR	34071030	34071078	.	+	.	Parent=Os02t0800000-01
Chr02	irgsp1_rep	CDS	34071079	34071387	.	+	0	Parent=Os02t0800000-01
Chr02	irgsp1_rep	CDS	34071912	34071977	.	+	0	Parent=Os02t0800000-01
Chr02	irgsp1_rep	CDS	34072230	34072410	.	+	0	Parent=Os02t0800000-01
Chr02	irgsp1_rep	CDS	34072671	34072867	.	+	2	Parent=Os02t0800000-01
Chr02	irgsp1_rep	CDS	34072991	34073041	.	+	0	Parent=Os02t0800000-01
Chr02	irgsp1_rep	CDS	34073116	34073207	.	+	0	Parent=Os02t0800000-01
Chr02	irgsp1_rep	CDS	34073741	34073856	.	+	1	Parent=Os02t0800000-01
Chr02	irgsp1_rep	CDS	34074599	34074681	.	+	2	Parent=Os02t0800000-01
Chr02	irgsp1_rep	CDS	34074833	34074937	.	+	0	Parent=Os02t0800000-01
Chr02	irgsp1_rep	CDS	34075075	34075218	.	+	0	Parent=Os02t0800000-01
Chr02	irgsp1_rep	three_prime_UTR	34075219	34075500	.	+	.	Parent=Os02t0800000-01
Chr02	irgsp1_rep	mRNA	34075838	34078156	.	-	.	ID=Os02t0800100-01;Name=Os02t0800100-01;Locus_id=Os02g0800100;Note=Proteasome maturation factor UMP1 family protein.;Transcript_evidence=AK069830 (DDBJ%2C Best hit);ORF_evidence=B4FLC7 (UniProt);InterPro=Proteasome maturation factor UMP1 (IPR008012);NIAS_FLcDNA=J023030M09;Expression=AK069830;TENOR=Os02t0800100-01;KEGG=Os02t0800100-01
Chr02	irgsp1_rep	five_prime_UTR	34078092	34078156	.	-	.	Parent=Os02t0800100-01
Chr02	irgsp1_rep	CDS	34077966	34078091	.	-	0	Parent=Os02t0800100-01
Chr02	irgsp1_rep	CDS	34077783	34077883	.	-	0	Parent=Os02t0800100-01
Chr02	irgsp1_rep	CDS	34076917	34077014	.	-	1	Parent=Os02t0800100-01
Chr02	irgsp1_rep	CDS	34076124	34076224	.	-	2	Parent=Os02t0800100-01
Chr02	irgsp1_rep	three_prime_UTR	34075838	34076123	.	-	.	Parent=Os02t0800100-01
Chr02	irgsp1_rep	mRNA	34081775	34082447	.	+	.	ID=Os02t0800300-01;Name=Os02t0800300-01;Locus_id=Os02g0800300;Note=Conserved hypothetical protein.;Transcript_evidence=AK064756 (DDBJ%2C Best hit);ORF_evidence=A2XAN2 (UniProt);NIAS_FLcDNA=002-120-G05;Expression=AK064756;TENOR=Os02t0800300-01;KEGG=Os02t0800300-01
Chr02	irgsp1_rep	five_prime_UTR	34081775	34081816	.	+	.	Parent=Os02t0800300-01
Chr02	irgsp1_rep	CDS	34081817	34082200	.	+	0	Parent=Os02t0800300-01
Chr02	irgsp1_rep	three_prime_UTR	34082201	34082447	.	+	.	Parent=Os02t0800300-01
Chr02	irgsp1_rep	mRNA	34084356	34085028	.	+	.	ID=Os02t0800400-01;Name=Os02t0800400-01;Locus_id=Os02g0800400;Note=Conserved hypothetical protein.;Transcript_evidence=AK064756 (DDBJ%2C Best hit);ORF_evidence=A2XAN2 (UniProt);NIAS_FLcDNA=002-120-G05;Expression=AK064756;TENOR=Os02t0800400-01;KEGG=Os02t0800400-01
Chr02	irgsp1_rep	five_prime_UTR	34084356	34084397	.	+	.	Parent=Os02t0800400-01
Chr02	irgsp1_rep	CDS	34084398	34084781	.	+	0	Parent=Os02t0800400-01
Chr02	irgsp1_rep	three_prime_UTR	34084782	34085028	.	+	.	Parent=Os02t0800400-01
Chr02	irgsp1_rep	mRNA	34087936	34089381	.	+	.	ID=Os02t0800433-00;Name=Os02t0800433-00;Locus_id=Os02g0800433;Note=Non-protein coding transcript.;Transcript_evidence=CT831260 (DDBJ%2C Secondary hit);ORF_evidence=NONE;TENOR=Os02t0800433-00
Chr02	irgsp1_rep	exon	34087936	34088414	.	+	.	Parent=Os02t0800433-00
Chr02	irgsp1_rep	exon	34088632	34088825	.	+	.	Parent=Os02t0800433-00
Chr02	irgsp1_rep	exon	34089082	34089381	.	+	.	Parent=Os02t0800433-00
Chr02	irgsp1_rep	mRNA	34114274	34125876	.	-	.	ID=Os02t0800500-01;Name=Os02t0800500-01;Locus_id=Os02g0800500;Note=Similar to Cyclin B.;Transcript_evidence=AK072342 (DDBJ%2C Best hit);ORF_evidence=Q0DWQ7 (UniProt);InterPro=Proteasome maturation factor UMP1 (IPR008012);NIAS_FLcDNA=J023052N08;Expression=AK072342;TENOR=Os02t0800500-01;KEGG=Os02t0800500-01
Chr02	irgsp1_rep	five_prime_UTR	34125831	34125876	.	-	.	Parent=Os02t0800500-01
Chr02	irgsp1_rep	CDS	34125705	34125830	.	-	0	Parent=Os02t0800500-01
Chr02	irgsp1_rep	CDS	34125509	34125609	.	-	0	Parent=Os02t0800500-01
Chr02	irgsp1_rep	CDS	34124656	34124753	.	-	1	Parent=Os02t0800500-01
Chr02	irgsp1_rep	CDS	34124003	34124004	.	-	2	Parent=Os02t0800500-01
Chr02	irgsp1_rep	three_prime_UTR	34123654	34124002	.	-	.	Parent=Os02t0800500-01
Chr02	irgsp1_rep	three_prime_UTR	34123112	34123567	.	-	.	Parent=Os02t0800500-01
Chr02	irgsp1_rep	three_prime_UTR	34122837	34122912	.	-	.	Parent=Os02t0800500-01
Chr02	irgsp1_rep	three_prime_UTR	34122376	34122629	.	-	.	Parent=Os02t0800500-01
Chr02	irgsp1_rep	three_prime_UTR	34119516	34119644	.	-	.	Parent=Os02t0800500-01
Chr02	irgsp1_rep	three_prime_UTR	34119297	34119392	.	-	.	Parent=Os02t0800500-01
Chr02	irgsp1_rep	three_prime_UTR	34118821	34118944	.	-	.	Parent=Os02t0800500-01
Chr02	irgsp1_rep	three_prime_UTR	34118576	34118722	.	-	.	Parent=Os02t0800500-01
Chr02	irgsp1_rep	three_prime_UTR	34118417	34118485	.	-	.	Parent=Os02t0800500-01
Chr02	irgsp1_rep	three_prime_UTR	34118062	34118146	.	-	.	Parent=Os02t0800500-01
Chr02	irgsp1_rep	three_prime_UTR	34117796	34117883	.	-	.	Parent=Os02t0800500-01
Chr02	irgsp1_rep	three_prime_UTR	34117010	34117121	.	-	.	Parent=Os02t0800500-01
Chr02	irgsp1_rep	three_prime_UTR	34116346	34116452	.	-	.	Parent=Os02t0800500-01
Chr02	irgsp1_rep	three_prime_UTR	34115701	34115756	.	-	.	Parent=Os02t0800500-01
Chr02	irgsp1_rep	three_prime_UTR	34114821	34115171	.	-	.	Parent=Os02t0800500-01
Chr02	irgsp1_rep	three_prime_UTR	34114274	34114631	.	-	.	Parent=Os02t0800500-01
Chr02	irgsp1_rep	mRNA	34117382	34124715	.	-	.	ID=Os02t0800500-02;Name=Os02t0800500-02;Locus_id=Os02g0800500;Note=Similar to Cyclin-B1-2.;Transcript_evidence=AK099813 (DDBJ%2C Best hit);ORF_evidence=Q0DWQ7 (UniProt);InterPro=Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763);NIAS_FLcDNA=J013099K24;TENOR=Os02t0800500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	34124656	34124715	.	-	.	Parent=Os02t0800500-02
Chr02	irgsp1_rep	five_prime_UTR	34123855	34124004	.	-	.	Parent=Os02t0800500-02
Chr02	irgsp1_rep	CDS	34123654	34123854	.	-	0	Parent=Os02t0800500-02
Chr02	irgsp1_rep	CDS	34123403	34123567	.	-	0	Parent=Os02t0800500-02
Chr02	irgsp1_rep	CDS	34123184	34123252	.	-	0	Parent=Os02t0800500-02
Chr02	irgsp1_rep	three_prime_UTR	34123112	34123183	.	-	.	Parent=Os02t0800500-02
Chr02	irgsp1_rep	three_prime_UTR	34122837	34122912	.	-	.	Parent=Os02t0800500-02
Chr02	irgsp1_rep	three_prime_UTR	34122376	34122629	.	-	.	Parent=Os02t0800500-02
Chr02	irgsp1_rep	three_prime_UTR	34119516	34119644	.	-	.	Parent=Os02t0800500-02
Chr02	irgsp1_rep	three_prime_UTR	34119297	34119392	.	-	.	Parent=Os02t0800500-02
Chr02	irgsp1_rep	three_prime_UTR	34118821	34118944	.	-	.	Parent=Os02t0800500-02
Chr02	irgsp1_rep	three_prime_UTR	34118576	34118722	.	-	.	Parent=Os02t0800500-02
Chr02	irgsp1_rep	three_prime_UTR	34117382	34118485	.	-	.	Parent=Os02t0800500-02
Chr02	irgsp1_rep	mRNA	34117380	34122934	.	-	.	ID=Os02t0800500-03;Name=Os02t0800500-03;Locus_id=Os02g0800500;Note=Similar to cDNA clone:J033089A08%2C full insert sequence.;Transcript_evidence=AK067830 (DDBJ%2C Best hit);ORF_evidence=B7ESX6 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013122A20;Expression=AK067830;TENOR=Os02t0800500-03;KEGG=Os02t0800500-03 (EC:1.6.5.3%2C EC:1.6.99.3)
Chr02	irgsp1_rep	five_prime_UTR	34122837	34122934	.	-	.	Parent=Os02t0800500-03
Chr02	irgsp1_rep	five_prime_UTR	34119660	34122629	.	-	.	Parent=Os02t0800500-03
Chr02	irgsp1_rep	CDS	34119516	34119659	.	-	0	Parent=Os02t0800500-03
Chr02	irgsp1_rep	CDS	34119333	34119392	.	-	0	Parent=Os02t0800500-03
Chr02	irgsp1_rep	CDS	34118885	34118944	.	-	0	Parent=Os02t0800500-03
Chr02	irgsp1_rep	three_prime_UTR	34118821	34118884	.	-	.	Parent=Os02t0800500-03
Chr02	irgsp1_rep	three_prime_UTR	34118576	34118722	.	-	.	Parent=Os02t0800500-03
Chr02	irgsp1_rep	three_prime_UTR	34117380	34118485	.	-	.	Parent=Os02t0800500-03
Chr02	irgsp1_rep	mRNA	34117380	34118747	.	-	.	ID=Os02t0800500-04;Name=Os02t0800500-04;Locus_id=Os02g0800500;Note=Similar to Cyclin-B1-2.;Transcript_evidence=AK069086 (DDBJ%2C Best hit);ORF_evidence=Q0DWQ7 (UniProt);NIAS_FLcDNA=J023005M23;Expression=AK069086;TENOR=Os02t0800500-04;KEGG=Os02t0800500-04
Chr02	irgsp1_rep	five_prime_UTR	34118741	34118747	.	-	.	Parent=Os02t0800500-04
Chr02	irgsp1_rep	CDS	34118648	34118740	.	-	0	Parent=Os02t0800500-04
Chr02	irgsp1_rep	three_prime_UTR	34117380	34118647	.	-	.	Parent=Os02t0800500-04
Chr02	irgsp1_rep	mRNA	34101931	34104618	.	+	.	ID=Os02t0800600-01;Name=Os02t0800600-01;Locus_id=Os02g0800600;Note=Conserved hypothetical protein.;Transcript_evidence=AK065568 (DDBJ%2C Best hit);ORF_evidence=B9EV06 (UniProt);NIAS_FLcDNA=J013026L03;TENOR=Os02t0800600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	34101931	34103019	.	+	.	Parent=Os02t0800600-01
Chr02	irgsp1_rep	five_prime_UTR	34104066	34104158	.	+	.	Parent=Os02t0800600-01
Chr02	irgsp1_rep	CDS	34104159	34104189	.	+	0	Parent=Os02t0800600-01
Chr02	irgsp1_rep	CDS	34104438	34104568	.	+	2	Parent=Os02t0800600-01
Chr02	irgsp1_rep	three_prime_UTR	34104569	34104618	.	+	.	Parent=Os02t0800600-01
Chr02	irgsp1_rep	mRNA	34108889	34109561	.	+	.	ID=Os02t0800700-01;Name=Os02t0800700-01;Locus_id=Os02g0800700;Note=Conserved hypothetical protein.;Transcript_evidence=AK064756 (DDBJ%2C Best hit);ORF_evidence=A2XAN2 (UniProt);NIAS_FLcDNA=002-120-G05;Expression=AK064756;TENOR=Os02t0800700-01;KEGG=Os02t0800700-01
Chr02	irgsp1_rep	five_prime_UTR	34108889	34108930	.	+	.	Parent=Os02t0800700-01
Chr02	irgsp1_rep	CDS	34108931	34109314	.	+	0	Parent=Os02t0800700-01
Chr02	irgsp1_rep	three_prime_UTR	34109315	34109561	.	+	.	Parent=Os02t0800700-01
Chr02	irgsp1_rep	mRNA	34112476	34113921	.	+	.	ID=Os02t0800750-00;Name=Os02t0800750-00;Locus_id=Os02g0800750;Note=Non-protein coding transcript.;Transcript_evidence=CT831260 (DDBJ%2C Secondary hit);ORF_evidence=NONE;TENOR=Os02t0800750-00
Chr02	irgsp1_rep	exon	34112476	34112954	.	+	.	Parent=Os02t0800750-00
Chr02	irgsp1_rep	exon	34113172	34113365	.	+	.	Parent=Os02t0800750-00
Chr02	irgsp1_rep	exon	34113622	34113921	.	+	.	Parent=Os02t0800750-00
Chr02	irgsp1_rep	mRNA	34126480	34129167	.	+	.	ID=Os02t0800800-01;Name=Os02t0800800-01;Locus_id=Os02g0800800;Note=Conserved hypothetical protein.;Transcript_evidence=AK065568 (DDBJ%2C Best hit);ORF_evidence=B9EV06 (UniProt);NIAS_FLcDNA=J013026L03;TENOR=Os02t0800800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	34126480	34127568	.	+	.	Parent=Os02t0800800-01
Chr02	irgsp1_rep	five_prime_UTR	34128615	34128707	.	+	.	Parent=Os02t0800800-01
Chr02	irgsp1_rep	CDS	34128708	34128738	.	+	0	Parent=Os02t0800800-01
Chr02	irgsp1_rep	CDS	34128987	34129117	.	+	2	Parent=Os02t0800800-01
Chr02	irgsp1_rep	three_prime_UTR	34129118	34129167	.	+	.	Parent=Os02t0800800-01
Chr02	irgsp1_rep	mRNA	34133450	34134122	.	+	.	ID=Os02t0800900-01;Name=Os02t0800900-01;Locus_id=Os02g0800900;Note=Conserved hypothetical protein.;Transcript_evidence=AK064756 (DDBJ%2C Best hit);ORF_evidence=A2XAN2 (UniProt);NIAS_FLcDNA=002-120-G05;Expression=AK064756;TENOR=Os02t0800900-01;KEGG=Os02t0800900-01
Chr02	irgsp1_rep	five_prime_UTR	34133450	34133491	.	+	.	Parent=Os02t0800900-01
Chr02	irgsp1_rep	CDS	34133492	34133875	.	+	0	Parent=Os02t0800900-01
Chr02	irgsp1_rep	three_prime_UTR	34133876	34134122	.	+	.	Parent=Os02t0800900-01
Chr02	irgsp1_rep	mRNA	34136030	34136702	.	+	.	ID=Os02t0801000-01;Name=Os02t0801000-01;Locus_id=Os02g0801000;Note=Conserved hypothetical protein.;Transcript_evidence=AK064756 (DDBJ%2C Best hit);ORF_evidence=A2XAN2 (UniProt);NIAS_FLcDNA=002-120-G05;Expression=AK064756;TENOR=Os02t0801000-01;KEGG=Os02t0801000-01
Chr02	irgsp1_rep	five_prime_UTR	34136030	34136071	.	+	.	Parent=Os02t0801000-01
Chr02	irgsp1_rep	CDS	34136072	34136455	.	+	0	Parent=Os02t0801000-01
Chr02	irgsp1_rep	three_prime_UTR	34136456	34136702	.	+	.	Parent=Os02t0801000-01
Chr02	irgsp1_rep	mRNA	34138611	34139283	.	+	.	ID=Os02t0801100-01;Name=Os02t0801100-01;Locus_id=Os02g0801100;Note=Conserved hypothetical protein.;Transcript_evidence=AK064756 (DDBJ%2C Best hit);ORF_evidence=A2XAN2 (UniProt);NIAS_FLcDNA=002-120-G05;Expression=AK064756;TENOR=Os02t0801100-01;KEGG=Os02t0801100-01
Chr02	irgsp1_rep	five_prime_UTR	34138611	34138652	.	+	.	Parent=Os02t0801100-01
Chr02	irgsp1_rep	CDS	34138653	34139036	.	+	0	Parent=Os02t0801100-01
Chr02	irgsp1_rep	three_prime_UTR	34139037	34139283	.	+	.	Parent=Os02t0801100-01
Chr02	irgsp1_rep	mRNA	34089732	34101310	.	-	.	ID=Os02t0801200-01;Name=Os02t0801200-01;Locus_id=Os02g0801200;Note=Similar to Cyclin B.;Transcript_evidence=AK067815 (DDBJ%2C Best hit);ORF_evidence=Q0DWQ7 (UniProt);InterPro=Proteasome maturation factor UMP1 (IPR008012);NIAS_FLcDNA=J013118P06;Expression=AK067815;TENOR=Os02t0801200-01;KEGG=Os02t0801200-01
Chr02	irgsp1_rep	five_prime_UTR	34101282	34101310	.	-	.	Parent=Os02t0801200-01
Chr02	irgsp1_rep	CDS	34101156	34101281	.	-	0	Parent=Os02t0801200-01
Chr02	irgsp1_rep	CDS	34100957	34101057	.	-	0	Parent=Os02t0801200-01
Chr02	irgsp1_rep	CDS	34100104	34100201	.	-	1	Parent=Os02t0801200-01
Chr02	irgsp1_rep	CDS	34099451	34099452	.	-	2	Parent=Os02t0801200-01
Chr02	irgsp1_rep	three_prime_UTR	34099102	34099450	.	-	.	Parent=Os02t0801200-01
Chr02	irgsp1_rep	three_prime_UTR	34098560	34099015	.	-	.	Parent=Os02t0801200-01
Chr02	irgsp1_rep	three_prime_UTR	34098285	34098360	.	-	.	Parent=Os02t0801200-01
Chr02	irgsp1_rep	three_prime_UTR	34097825	34098078	.	-	.	Parent=Os02t0801200-01
Chr02	irgsp1_rep	three_prime_UTR	34094965	34095093	.	-	.	Parent=Os02t0801200-01
Chr02	irgsp1_rep	three_prime_UTR	34094746	34094841	.	-	.	Parent=Os02t0801200-01
Chr02	irgsp1_rep	three_prime_UTR	34094270	34094393	.	-	.	Parent=Os02t0801200-01
Chr02	irgsp1_rep	three_prime_UTR	34094025	34094171	.	-	.	Parent=Os02t0801200-01
Chr02	irgsp1_rep	three_prime_UTR	34093866	34093934	.	-	.	Parent=Os02t0801200-01
Chr02	irgsp1_rep	three_prime_UTR	34093511	34093595	.	-	.	Parent=Os02t0801200-01
Chr02	irgsp1_rep	three_prime_UTR	34093197	34093274	.	-	.	Parent=Os02t0801200-01
Chr02	irgsp1_rep	three_prime_UTR	34092462	34092573	.	-	.	Parent=Os02t0801200-01
Chr02	irgsp1_rep	three_prime_UTR	34091153	34091208	.	-	.	Parent=Os02t0801200-01
Chr02	irgsp1_rep	three_prime_UTR	34090273	34090623	.	-	.	Parent=Os02t0801200-01
Chr02	irgsp1_rep	three_prime_UTR	34089732	34090007	.	-	.	Parent=Os02t0801200-01
Chr02	irgsp1_rep	mRNA	34092829	34094196	.	-	.	ID=Os02t0801200-02;Name=Os02t0801200-02;Locus_id=Os02g0801200;Note=Similar to Cyclin-B1-2.;Transcript_evidence=AK069086 (DDBJ%2C Best hit);ORF_evidence=Q0DWQ7 (UniProt);NIAS_FLcDNA=J023005M23;Expression=AK069086;TENOR=Os02t0801200-02;KEGG=Os02t0801200-02
Chr02	irgsp1_rep	five_prime_UTR	34094190	34094196	.	-	.	Parent=Os02t0801200-02
Chr02	irgsp1_rep	CDS	34094097	34094189	.	-	0	Parent=Os02t0801200-02
Chr02	irgsp1_rep	three_prime_UTR	34092829	34094096	.	-	.	Parent=Os02t0801200-02
Chr02	irgsp1_rep	mRNA	34142207	34143652	.	+	.	ID=Os02t0801210-00;Name=Os02t0801210-00;Locus_id=Os02g0801210;Note=Non-protein coding transcript.;Transcript_evidence=CT831260 (DDBJ%2C Secondary hit);ORF_evidence=NONE;TENOR=Os02t0801210-00
Chr02	irgsp1_rep	exon	34142207	34142685	.	+	.	Parent=Os02t0801210-00
Chr02	irgsp1_rep	exon	34142903	34143096	.	+	.	Parent=Os02t0801210-00
Chr02	irgsp1_rep	exon	34143353	34143652	.	+	.	Parent=Os02t0801210-00
Chr02	irgsp1_rep	mRNA	34144181	34144648	.	-	.	ID=Os02t0801255-00;Name=Os02t0801255-00;Locus_id=Os02g0801255;Note=Similar to cDNA clone:J013118P06%2C full insert sequence.;Transcript_evidence=ab initio prediction;ORF_evidence=B7EE20 (UniProt);TENOR=Os02t0801255-00
Chr02	irgsp1_rep	CDS	34144540	34144648	.	-	0	Parent=Os02t0801255-00
Chr02	irgsp1_rep	CDS	34144181	34144362	.	-	2	Parent=Os02t0801255-00
Chr02	irgsp1_rep	mRNA	34147099	34154432	.	-	.	ID=Os02t0801300-01;Name=Os02t0801300-01;Locus_id=Os02g0801300;Note=Similar to Cyclin-B1-2.;Transcript_evidence=AK099813 (DDBJ%2C Best hit);ORF_evidence=Q0DWQ7 (UniProt);InterPro=Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763);NIAS_FLcDNA=J013099K24;Expression=AK099813;TENOR=Os02t0801300-01;KEGG=Os02t0801300-01
Chr02	irgsp1_rep	five_prime_UTR	34154373	34154432	.	-	.	Parent=Os02t0801300-01
Chr02	irgsp1_rep	five_prime_UTR	34153572	34153721	.	-	.	Parent=Os02t0801300-01
Chr02	irgsp1_rep	CDS	34153371	34153571	.	-	0	Parent=Os02t0801300-01
Chr02	irgsp1_rep	CDS	34153120	34153284	.	-	0	Parent=Os02t0801300-01
Chr02	irgsp1_rep	CDS	34152901	34152969	.	-	0	Parent=Os02t0801300-01
Chr02	irgsp1_rep	three_prime_UTR	34152829	34152900	.	-	.	Parent=Os02t0801300-01
Chr02	irgsp1_rep	three_prime_UTR	34152554	34152629	.	-	.	Parent=Os02t0801300-01
Chr02	irgsp1_rep	three_prime_UTR	34152093	34152346	.	-	.	Parent=Os02t0801300-01
Chr02	irgsp1_rep	three_prime_UTR	34149233	34149361	.	-	.	Parent=Os02t0801300-01
Chr02	irgsp1_rep	three_prime_UTR	34149014	34149109	.	-	.	Parent=Os02t0801300-01
Chr02	irgsp1_rep	three_prime_UTR	34148538	34148661	.	-	.	Parent=Os02t0801300-01
Chr02	irgsp1_rep	three_prime_UTR	34148293	34148439	.	-	.	Parent=Os02t0801300-01
Chr02	irgsp1_rep	three_prime_UTR	34147099	34148202	.	-	.	Parent=Os02t0801300-01
Chr02	irgsp1_rep	mRNA	34147097	34148464	.	-	.	ID=Os02t0801300-02;Name=Os02t0801300-02;Locus_id=Os02g0801300;Note=Similar to Cyclin-B1-2.;Transcript_evidence=AK069086 (DDBJ%2C Best hit);ORF_evidence=Q0DWQ7 (UniProt);NIAS_FLcDNA=J023005M23;Expression=AK069086;TENOR=Os02t0801300-02;KEGG=Os02t0801300-02
Chr02	irgsp1_rep	five_prime_UTR	34148458	34148464	.	-	.	Parent=Os02t0801300-02
Chr02	irgsp1_rep	CDS	34148365	34148457	.	-	0	Parent=Os02t0801300-02
Chr02	irgsp1_rep	three_prime_UTR	34147097	34148364	.	-	.	Parent=Os02t0801300-02
Chr02	irgsp1_rep	mRNA	34147988	34155580	.	-	.	ID=Os02t0801300-03;Name=Os02t0801300-03;Locus_id=Os02g0801300;Note=Similar to Cyclin B.;Transcript_evidence=AK072332 (DDBJ%2C Best hit);ORF_evidence=Q0DWQ7 (UniProt);InterPro=Proteasome maturation factor UMP1 (IPR008012);NIAS_FLcDNA=J023038L20;TENOR=Os02t0801300-03
Chr02	irgsp1_rep	five_prime_UTR	34155548	34155580	.	-	.	Parent=Os02t0801300-03
Chr02	irgsp1_rep	CDS	34155422	34155547	.	-	0	Parent=Os02t0801300-03
Chr02	irgsp1_rep	CDS	34155226	34155326	.	-	0	Parent=Os02t0801300-03
Chr02	irgsp1_rep	CDS	34154373	34154470	.	-	1	Parent=Os02t0801300-03
Chr02	irgsp1_rep	CDS	34153720	34153721	.	-	2	Parent=Os02t0801300-03
Chr02	irgsp1_rep	three_prime_UTR	34153371	34153719	.	-	.	Parent=Os02t0801300-03
Chr02	irgsp1_rep	three_prime_UTR	34153120	34153284	.	-	.	Parent=Os02t0801300-03
Chr02	irgsp1_rep	three_prime_UTR	34152829	34152969	.	-	.	Parent=Os02t0801300-03
Chr02	irgsp1_rep	three_prime_UTR	34152554	34152629	.	-	.	Parent=Os02t0801300-03
Chr02	irgsp1_rep	three_prime_UTR	34149233	34152346	.	-	.	Parent=Os02t0801300-03
Chr02	irgsp1_rep	three_prime_UTR	34149014	34149109	.	-	.	Parent=Os02t0801300-03
Chr02	irgsp1_rep	three_prime_UTR	34148538	34148661	.	-	.	Parent=Os02t0801300-03
Chr02	irgsp1_rep	three_prime_UTR	34148293	34148439	.	-	.	Parent=Os02t0801300-03
Chr02	irgsp1_rep	three_prime_UTR	34147988	34148202	.	-	.	Parent=Os02t0801300-03
Chr02	irgsp1_rep	mRNA	34155718	34159564	.	+	.	ID=Os02t0801450-01;Name=Os02t0801450-01;Locus_id=Os02g0801450;Note=Similar to OSJNba0093F12.23 protein.;Transcript_evidence=AK065428 (DDBJ%2C Best hit);ORF_evidence=Q5JQR9 (UniProt);NIAS_FLcDNA=J013022F14;TENOR=Os02t0801450-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	34155718	34155718	.	+	.	Parent=Os02t0801450-01
Chr02	irgsp1_rep	CDS	34155719	34155908	.	+	0	Parent=Os02t0801450-01
Chr02	irgsp1_rep	CDS	34156063	34156124	.	+	2	Parent=Os02t0801450-01
Chr02	irgsp1_rep	three_prime_UTR	34156125	34159564	.	+	.	Parent=Os02t0801450-01
Chr02	irgsp1_rep	mRNA	34167662	34168334	.	+	.	ID=Os02t0801600-00;Name=Os02t0801600-00;Locus_id=Os02g0801600;Note=Hypothetical conserved gene.;Transcript_evidence=AK064756 (DDBJ%2C Secondary hit);ORF_evidence=Q69IJ0 (UniProt);Expression=AK064756;TENOR=Os02t0801600-00;KEGG=Os02t0801600-00
Chr02	irgsp1_rep	five_prime_UTR	34167662	34167703	.	+	.	Parent=Os02t0801600-00
Chr02	irgsp1_rep	CDS	34167704	34168087	.	+	0	Parent=Os02t0801600-00
Chr02	irgsp1_rep	three_prime_UTR	34168088	34168334	.	+	.	Parent=Os02t0801600-00
Chr02	irgsp1_rep	mRNA	34170247	34180842	.	+	.	ID=Os02t0801700-01;Name=Os02t0801700-01;Locus_id=Os02g0801700;Note=Zinc finger%2C BED-type predicted domain containing protein.;Transcript_evidence=AK069005 (DDBJ%2C Best hit);ORF_evidence=Q2QYJ5 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Zinc finger%2C BED-type predicted (IPR003656),HAT dimerisation (IPR008906),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J023001C09;Expression=AK069005;TENOR=Os02t0801700-01;KEGG=Os02t0801700-01
Chr02	irgsp1_rep	five_prime_UTR	34170247	34170952	.	+	.	Parent=Os02t0801700-01
Chr02	irgsp1_rep	five_prime_UTR	34173984	34174065	.	+	.	Parent=Os02t0801700-01
Chr02	irgsp1_rep	five_prime_UTR	34174369	34174515	.	+	.	Parent=Os02t0801700-01
Chr02	irgsp1_rep	five_prime_UTR	34174774	34174831	.	+	.	Parent=Os02t0801700-01
Chr02	irgsp1_rep	five_prime_UTR	34174911	34175013	.	+	.	Parent=Os02t0801700-01
Chr02	irgsp1_rep	five_prime_UTR	34175130	34175191	.	+	.	Parent=Os02t0801700-01
Chr02	irgsp1_rep	five_prime_UTR	34178560	34178560	.	+	.	Parent=Os02t0801700-01
Chr02	irgsp1_rep	CDS	34178561	34178971	.	+	0	Parent=Os02t0801700-01
Chr02	irgsp1_rep	CDS	34180193	34180696	.	+	0	Parent=Os02t0801700-01
Chr02	irgsp1_rep	three_prime_UTR	34180697	34180842	.	+	.	Parent=Os02t0801700-01
Chr02	irgsp1_rep	mRNA	34182107	34183667	.	+	.	ID=Os02t0801900-01;Name=Os02t0801900-01;Locus_id=Os02g0801900;Note=Conserved hypothetical protein.;Transcript_evidence=AK109488 (DDBJ%2C Best hit);ORF_evidence=B8AEE1 (UniProt);NIAS_FLcDNA=001-203-G01;Expression=AK109488;TENOR=Os02t0801900-01;KEGG=Os02t0801900-01
Chr02	irgsp1_rep	five_prime_UTR	34182107	34182791	.	+	.	Parent=Os02t0801900-01
Chr02	irgsp1_rep	CDS	34182792	34183143	.	+	0	Parent=Os02t0801900-01
Chr02	irgsp1_rep	CDS	34183352	34183374	.	+	2	Parent=Os02t0801900-01
Chr02	irgsp1_rep	three_prime_UTR	34183375	34183404	.	+	.	Parent=Os02t0801900-01
Chr02	irgsp1_rep	three_prime_UTR	34183503	34183667	.	+	.	Parent=Os02t0801900-01
Chr02	irgsp1_rep	mRNA	34182166	34184584	.	+	.	ID=Os02t0801900-02;Name=Os02t0801900-02;Locus_id=Os02g0801900;Note=Conserved hypothetical protein.;Transcript_evidence=AK109498 (DDBJ%2C Best hit);ORF_evidence=B8AEE1 (UniProt);NIAS_FLcDNA=001-206-H03;Expression=AK109498;TENOR=Os02t0801900-02;KEGG=Os02t0801900-02
Chr02	irgsp1_rep	five_prime_UTR	34182166	34182791	.	+	.	Parent=Os02t0801900-02
Chr02	irgsp1_rep	CDS	34182792	34183143	.	+	0	Parent=Os02t0801900-02
Chr02	irgsp1_rep	CDS	34183352	34183374	.	+	2	Parent=Os02t0801900-02
Chr02	irgsp1_rep	three_prime_UTR	34183375	34183404	.	+	.	Parent=Os02t0801900-02
Chr02	irgsp1_rep	three_prime_UTR	34183503	34183610	.	+	.	Parent=Os02t0801900-02
Chr02	irgsp1_rep	three_prime_UTR	34184293	34184584	.	+	.	Parent=Os02t0801900-02
Chr02	irgsp1_rep	mRNA	34199541	34203704	.	+	.	ID=Os02t0802200-01;Name=Os02t0802200-01;Locus_id=Os02g0802200;Note=Glycoside hydrolase family 79%2C N-terminal protein.;Transcript_evidence=AK107538 (DDBJ%2C Best hit);ORF_evidence=A2XAN8 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C acting on glycosyl bonds (GO:0016798),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 79 (IPR005199),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=002-129-H06;Expression=AK107538;TENOR=Os02t0802200-01;KEGG=Os02t0802200-01
Chr02	irgsp1_rep	five_prime_UTR	34199541	34199724	.	+	.	Parent=Os02t0802200-01
Chr02	irgsp1_rep	CDS	34199725	34199970	.	+	0	Parent=Os02t0802200-01
Chr02	irgsp1_rep	CDS	34200650	34200686	.	+	0	Parent=Os02t0802200-01
Chr02	irgsp1_rep	CDS	34200957	34201140	.	+	2	Parent=Os02t0802200-01
Chr02	irgsp1_rep	CDS	34201232	34201380	.	+	1	Parent=Os02t0802200-01
Chr02	irgsp1_rep	CDS	34201778	34202011	.	+	2	Parent=Os02t0802200-01
Chr02	irgsp1_rep	CDS	34202099	34202288	.	+	2	Parent=Os02t0802200-01
Chr02	irgsp1_rep	CDS	34202370	34202495	.	+	1	Parent=Os02t0802200-01
Chr02	irgsp1_rep	CDS	34202893	34202992	.	+	1	Parent=Os02t0802200-01
Chr02	irgsp1_rep	CDS	34203105	34203464	.	+	0	Parent=Os02t0802200-01
Chr02	irgsp1_rep	three_prime_UTR	34203465	34203704	.	+	.	Parent=Os02t0802200-01
Chr02	irgsp1_rep	mRNA	34199818	34202249	.	-	.	ID=Os02t0802250-00;Name=Os02t0802250-00;Locus_id=Os02g0802250;Note=Hypothetical gene.;Transcript_evidence=BT085373 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0802250-00;KEGG=Os02t0802250-00
Chr02	irgsp1_rep	five_prime_UTR	34202248	34202249	.	-	.	Parent=Os02t0802250-00
Chr02	irgsp1_rep	CDS	34202107	34202247	.	-	0	Parent=Os02t0802250-00
Chr02	irgsp1_rep	CDS	34201949	34202020	.	-	0	Parent=Os02t0802250-00
Chr02	irgsp1_rep	three_prime_UTR	34201767	34201948	.	-	.	Parent=Os02t0802250-00
Chr02	irgsp1_rep	three_prime_UTR	34201219	34201376	.	-	.	Parent=Os02t0802250-00
Chr02	irgsp1_rep	three_prime_UTR	34200922	34201125	.	-	.	Parent=Os02t0802250-00
Chr02	irgsp1_rep	three_prime_UTR	34199818	34199972	.	-	.	Parent=Os02t0802250-00
Chr02	irgsp1_rep	mRNA	34204228	34206620	.	+	.	ID=Os02t0802301-01;Name=Os02t0802301-01;Locus_id=Os02g0802301;Note=Hypothetical conserved gene.;Transcript_evidence=AK287521 (DDBJ%2C Best hit);ORF_evidence=A2XRW8 (UniProt);NIAS_FLcDNA=J053046D11;TENOR=Os02t0802301-01;KEGG=Os02t0802301-01
Chr02	irgsp1_rep	five_prime_UTR	34204228	34204229	.	+	.	Parent=Os02t0802301-01
Chr02	irgsp1_rep	CDS	34204230	34204378	.	+	0	Parent=Os02t0802301-01
Chr02	irgsp1_rep	CDS	34205827	34205926	.	+	1	Parent=Os02t0802301-01
Chr02	irgsp1_rep	CDS	34206279	34206287	.	+	0	Parent=Os02t0802301-01
Chr02	irgsp1_rep	three_prime_UTR	34206288	34206620	.	+	.	Parent=Os02t0802301-01
Chr02	irgsp1_rep	mRNA	34206968	34209799	.	-	.	ID=Os02t0802400-01;Name=Os02t0802400-01;Locus_id=Os02g0802400;Note=Similar to calcineurin subunit B.;Transcript_evidence=AK243336 (DDBJ%2C Best hit);ORF_evidence=NP_001151790.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J100059D20;TENOR=Os02t0802400-01;KEGG=Os02t0802400-01
Chr02	irgsp1_rep	five_prime_UTR	34209648	34209799	.	-	.	Parent=Os02t0802400-01
Chr02	irgsp1_rep	CDS	34209578	34209647	.	-	0	Parent=Os02t0802400-01
Chr02	irgsp1_rep	CDS	34209350	34209474	.	-	2	Parent=Os02t0802400-01
Chr02	irgsp1_rep	CDS	34208524	34208620	.	-	0	Parent=Os02t0802400-01
Chr02	irgsp1_rep	CDS	34208296	34208405	.	-	2	Parent=Os02t0802400-01
Chr02	irgsp1_rep	CDS	34207505	34207579	.	-	0	Parent=Os02t0802400-01
Chr02	irgsp1_rep	CDS	34207300	34207350	.	-	0	Parent=Os02t0802400-01
Chr02	irgsp1_rep	three_prime_UTR	34206968	34207299	.	-	.	Parent=Os02t0802400-01
Chr02	irgsp1_rep	mRNA	34210440	34214885	.	-	.	ID=Os02t0802500-01;Name=Os02t0802500-01;Locus_id=Os02g0802500;Note=Similar to H(+)-translocating (Pyrophosphate-ENERGIZED) inorganic pyrophosphatase beta-1 polypeptide (EC 3.6.1.1) (Fragment).;Transcript_evidence=AK102146 (DDBJ%2C Best hit);ORF_evidence=Q704F4 (UniProt);GO=Biological Process: proton transport (GO:0015992),Cellular Component: membrane (GO:0016020),Molecular Function: inorganic diphosphatase activity (GO:0004427),Molecular Function: hydrogen-translocating pyrophosphatase activity (GO:0009678);InterPro=Pyrophosphate-energised proton pump (IPR004131);NIAS_FLcDNA=J033086B11;Expression=AK102146;TENOR=Os02t0802500-01;KEGG=Os02t0802500-01 (EC:3.6.1.1)
Chr02	irgsp1_rep	five_prime_UTR	34214780	34214885	.	-	.	Parent=Os02t0802500-01
Chr02	irgsp1_rep	CDS	34214542	34214779	.	-	0	Parent=Os02t0802500-01
Chr02	irgsp1_rep	CDS	34213038	34213612	.	-	2	Parent=Os02t0802500-01
Chr02	irgsp1_rep	CDS	34212459	34212838	.	-	0	Parent=Os02t0802500-01
Chr02	irgsp1_rep	CDS	34212288	34212374	.	-	1	Parent=Os02t0802500-01
Chr02	irgsp1_rep	CDS	34211864	34212194	.	-	1	Parent=Os02t0802500-01
Chr02	irgsp1_rep	CDS	34211170	34211580	.	-	0	Parent=Os02t0802500-01
Chr02	irgsp1_rep	CDS	34211041	34211100	.	-	0	Parent=Os02t0802500-01
Chr02	irgsp1_rep	CDS	34210741	34210947	.	-	0	Parent=Os02t0802500-01
Chr02	irgsp1_rep	three_prime_UTR	34210440	34210740	.	-	.	Parent=Os02t0802500-01
Chr02	irgsp1_rep	mRNA	34210424	34213253	.	-	.	ID=Os02t0802500-02;Name=Os02t0802500-02;Locus_id=Os02g0802500;Note=Similar to Proton translocating pyrophosphatase.;Transcript_evidence=AK064361 (DDBJ%2C Best hit);ORF_evidence=Q704F4 (UniProt);GO=Biological Process: proton transport (GO:0015992),Cellular Component: membrane (GO:0016020),Molecular Function: inorganic diphosphatase activity (GO:0004427),Molecular Function: hydrogen-translocating pyrophosphatase activity (GO:0009678);InterPro=Pyrophosphate-energised proton pump (IPR004131);NIAS_FLcDNA=002-108-B10;Expression=AK064361;TENOR=Os02t0802500-02;KEGG=Os02t0802500-02 (EC:3.6.1.1)
Chr02	irgsp1_rep	CDS	34213038	34213253	.	-	0	Parent=Os02t0802500-02
Chr02	irgsp1_rep	CDS	34212459	34212838	.	-	0	Parent=Os02t0802500-02
Chr02	irgsp1_rep	CDS	34212288	34212374	.	-	1	Parent=Os02t0802500-02
Chr02	irgsp1_rep	CDS	34211864	34212194	.	-	1	Parent=Os02t0802500-02
Chr02	irgsp1_rep	CDS	34211170	34211580	.	-	0	Parent=Os02t0802500-02
Chr02	irgsp1_rep	CDS	34211041	34211100	.	-	0	Parent=Os02t0802500-02
Chr02	irgsp1_rep	CDS	34210741	34210947	.	-	0	Parent=Os02t0802500-02
Chr02	irgsp1_rep	three_prime_UTR	34210424	34210740	.	-	.	Parent=Os02t0802500-02
Chr02	irgsp1_rep	mRNA	34210733	34214784	.	+	.	ID=Os02t0802575-00;Name=Os02t0802575-00;Locus_id=Os02g0802575;Note=Hypothetical protein.;Transcript_evidence=tplb0034o06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0802575-00
Chr02	irgsp1_rep	five_prime_UTR	34210733	34210929	.	+	.	Parent=Os02t0802575-00
Chr02	irgsp1_rep	five_prime_UTR	34211016	34211021	.	+	.	Parent=Os02t0802575-00
Chr02	irgsp1_rep	CDS	34211022	34211115	.	+	0	Parent=Os02t0802575-00
Chr02	irgsp1_rep	CDS	34211183	34211565	.	+	2	Parent=Os02t0802575-00
Chr02	irgsp1_rep	three_prime_UTR	34211566	34211593	.	+	.	Parent=Os02t0802575-00
Chr02	irgsp1_rep	three_prime_UTR	34211875	34212193	.	+	.	Parent=Os02t0802575-00
Chr02	irgsp1_rep	three_prime_UTR	34212287	34212364	.	+	.	Parent=Os02t0802575-00
Chr02	irgsp1_rep	three_prime_UTR	34212449	34212826	.	+	.	Parent=Os02t0802575-00
Chr02	irgsp1_rep	three_prime_UTR	34213030	34213605	.	+	.	Parent=Os02t0802575-00
Chr02	irgsp1_rep	three_prime_UTR	34214535	34214784	.	+	.	Parent=Os02t0802575-00
Chr02	irgsp1_rep	mRNA	34219634	34220329	.	+	.	ID=Os02t0802650-01;Name=Os02t0802650-01;Locus_id=Os02g0802650;Note=Non-protein coding transcript.;Transcript_evidence=AK242633 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090022N13;TENOR=Os02t0802650-01
Chr02	irgsp1_rep	exon	34219634	34220329	.	+	.	Parent=Os02t0802650-01
Chr02	irgsp1_rep	mRNA	34223237	34227448	.	+	.	ID=Os02t0802700-01;Name=Os02t0802700-01;Locus_id=Os02g0802700;CGSNL Gene Symbol=MGD2%2C MGD1;CGSNL Gene Name=MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2%2C MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 1;Oryzabase Gene Symbol Synonym(s)=OsMGD%2C MGD%2C OsMGD2%2C OsMGD1;Oryzabase Gene Name Synonym(s)=Monogalactosyldiacylglycerol synthase%2C MGDG synthase%2C MGDG synthase 2%2C Monogalactosyldiacylglycerol synthase 1%2C MGDG synthase 1;Note=Similar to MGDG synthase type A.;Transcript_evidence=AK100941 (DDBJ%2C Best hit);ORF_evidence=B6SV07 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: glycolipid biosynthetic process (GO:0009247),Biological Process: lipid glycosylation (GO:0030259),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Glycosyl transferase%2C family 28%2C C-terminal (IPR007235),Diacylglycerol glucosyltransferase%2C N-terminal (IPR009695);NIAS_FLcDNA=J023138C14;Oryzabase=15712,23401;Expression=AK100941;TENOR=Os02t0802700-01;KEGG=Os02t0802700-01
Chr02	irgsp1_rep	five_prime_UTR	34223237	34223237	.	+	.	Parent=Os02t0802700-01
Chr02	irgsp1_rep	CDS	34223238	34223475	.	+	0	Parent=Os02t0802700-01
Chr02	irgsp1_rep	CDS	34224002	34224029	.	+	2	Parent=Os02t0802700-01
Chr02	irgsp1_rep	CDS	34225006	34225167	.	+	1	Parent=Os02t0802700-01
Chr02	irgsp1_rep	CDS	34225269	34225410	.	+	1	Parent=Os02t0802700-01
Chr02	irgsp1_rep	CDS	34225827	34226051	.	+	0	Parent=Os02t0802700-01
Chr02	irgsp1_rep	CDS	34226156	34226218	.	+	0	Parent=Os02t0802700-01
Chr02	irgsp1_rep	CDS	34226324	34226398	.	+	0	Parent=Os02t0802700-01
Chr02	irgsp1_rep	CDS	34226705	34226992	.	+	0	Parent=Os02t0802700-01
Chr02	irgsp1_rep	three_prime_UTR	34226993	34227448	.	+	.	Parent=Os02t0802700-01
Chr02	irgsp1_rep	mRNA	34223738	34227369	.	+	.	ID=Os02t0802700-02;Name=Os02t0802700-02;Locus_id=Os02g0802700;RAP-DB Gene Symbol Synonym(s)=OsMGD;RAP-DB Gene Name Synonym(s)=Monogalactosyldiacylglycerol synthase;CGSNL Gene Symbol=MGD2%2C MGD1;CGSNL Gene Name=MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2%2C MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 1;Oryzabase Gene Symbol Synonym(s)=OsMGD%2C MGD%2C OsMGD2%2C OsMGD1;Oryzabase Gene Name Synonym(s)=Monogalactosyldiacylglycerol synthase%2C MGDG synthase%2C MGDG synthase 2%2C Monogalactosyldiacylglycerol synthase 1%2C MGDG synthase 1;Note=Monogalactosyldiacylglycerol synthase%2C "Salt%2C drought%2C submergence stress tolerance";Transcript_evidence=AB112060 (FR13A);ORF_evidence=Q7XZR6;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: glycolipid biosynthetic process (GO:0009247),Biological Process: lipid glycosylation (GO:0030259),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Diacylglycerol glucosyltransferase%2C N-terminal (IPR009695),Glycosyl transferase%2C family 28%2C C-terminal (IPR007235);Manual Curation=June 12%2C 2014;Literature_PMID=24843077,15088147;Oryzabase=15712,23401
Chr02	irgsp1_rep	five_prime_UTR	34223738	34223907	.	+	.	Parent=Os02t0802700-02
Chr02	irgsp1_rep	CDS	34223908	34224029	.	+	0	Parent=Os02t0802700-02
Chr02	irgsp1_rep	CDS	34225006	34225167	.	+	1	Parent=Os02t0802700-02
Chr02	irgsp1_rep	CDS	34225269	34225410	.	+	1	Parent=Os02t0802700-02
Chr02	irgsp1_rep	CDS	34225827	34226051	.	+	0	Parent=Os02t0802700-02
Chr02	irgsp1_rep	CDS	34226156	34226218	.	+	0	Parent=Os02t0802700-02
Chr02	irgsp1_rep	CDS	34226324	34226398	.	+	0	Parent=Os02t0802700-02
Chr02	irgsp1_rep	CDS	34226705	34226992	.	+	0	Parent=Os02t0802700-02
Chr02	irgsp1_rep	three_prime_UTR	34226993	34227369	.	+	.	Parent=Os02t0802700-02
Chr02	irgsp1_rep	mRNA	34223117	34227448	.	+	.	ID=Os02t0802700-03;Name=Os02t0802700-03;Locus_id=Os02g0802700;RAP-DB Gene Symbol Synonym(s)=OsMGD2;RAP-DB Gene Name Synonym(s)=MGDG synthase 2;CGSNL Gene Symbol=MGD2%2C MGD1;CGSNL Gene Name=MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2%2C MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 1;Oryzabase Gene Symbol Synonym(s)=OsMGD%2C MGD%2C OsMGD2%2C OsMGD1;Oryzabase Gene Name Synonym(s)=Monogalactosyldiacylglycerol synthase%2C MGDG synthase%2C MGDG synthase 2%2C Monogalactosyldiacylglycerol synthase 1%2C MGDG synthase 1;Note=Monogalactosyldiacylglycerol (MGDG) synthase%2C Plant growth and development%2C Grain quality;Transcript_evidence=Inferred from literature;ORF_evidence=Q0DWQ1;GO=Biological Process: glycolipid biosynthetic process (GO:0009247),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=Diacylglycerol glucosyltransferase%2C N-terminal (IPR009695),Glycosyl transferase%2C family 28%2C C-terminal (IPR007235);Manual Curation=August 30%2C 2019;Literature_PMID=31428115;Oryzabase=15712,23401;Subcellular location=chloroplast (GO:0009507)
Chr02	irgsp1_rep	five_prime_UTR	34223117	34223325	.	+	.	Parent=Os02t0802700-03
Chr02	irgsp1_rep	CDS	34223326	34223724	.	+	0	Parent=Os02t0802700-03
Chr02	irgsp1_rep	CDS	34223857	34224029	.	+	0	Parent=Os02t0802700-03
Chr02	irgsp1_rep	CDS	34225006	34225167	.	+	1	Parent=Os02t0802700-03
Chr02	irgsp1_rep	CDS	34225269	34225410	.	+	1	Parent=Os02t0802700-03
Chr02	irgsp1_rep	CDS	34225827	34226051	.	+	0	Parent=Os02t0802700-03
Chr02	irgsp1_rep	CDS	34226156	34226218	.	+	0	Parent=Os02t0802700-03
Chr02	irgsp1_rep	CDS	34226324	34226398	.	+	0	Parent=Os02t0802700-03
Chr02	irgsp1_rep	CDS	34226705	34226992	.	+	0	Parent=Os02t0802700-03
Chr02	irgsp1_rep	three_prime_UTR	34226993	34227448	.	+	.	Parent=Os02t0802700-03
Chr02	irgsp1_rep	mRNA	34238951	34241990	.	+	.	ID=Os02t0803200-01;Name=Os02t0803200-01;Locus_id=Os02g0803200;Note=Similar to 30S ribosomal protein S15.;Transcript_evidence=AK063404 (DDBJ%2C Best hit);ORF_evidence=B6TK08 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S15 (IPR000589),Ribosomal protein S15%2C bacterial-type (IPR005290),S15/NS1%2C RNA-binding (IPR009068);NIAS_FLcDNA=001-115-A06;Expression=AK063404;TENOR=Os02t0803200-01;KEGG=Os02t0803200-01
Chr02	irgsp1_rep	five_prime_UTR	34238951	34239010	.	+	.	Parent=Os02t0803200-01
Chr02	irgsp1_rep	CDS	34239011	34239881	.	+	0	Parent=Os02t0803200-01
Chr02	irgsp1_rep	CDS	34239990	34240078	.	+	2	Parent=Os02t0803200-01
Chr02	irgsp1_rep	CDS	34240164	34240275	.	+	0	Parent=Os02t0803200-01
Chr02	irgsp1_rep	CDS	34241268	34241320	.	+	2	Parent=Os02t0803200-01
Chr02	irgsp1_rep	CDS	34241440	34241658	.	+	0	Parent=Os02t0803200-01
Chr02	irgsp1_rep	three_prime_UTR	34241659	34241990	.	+	.	Parent=Os02t0803200-01
Chr02	irgsp1_rep	mRNA	34238999	34250985	.	-	.	ID=Os02t0803225-00;Name=Os02t0803225-00;Locus_id=Os02g0803225;Note=Hypothetical protein.;Transcript_evidence=tplb0043g17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0803225-00
Chr02	irgsp1_rep	five_prime_UTR	34250446	34250985	.	-	.	Parent=Os02t0803225-00
Chr02	irgsp1_rep	five_prime_UTR	34250284	34250364	.	-	.	Parent=Os02t0803225-00
Chr02	irgsp1_rep	five_prime_UTR	34250116	34250197	.	-	.	Parent=Os02t0803225-00
Chr02	irgsp1_rep	five_prime_UTR	34249669	34249775	.	-	.	Parent=Os02t0803225-00
Chr02	irgsp1_rep	five_prime_UTR	34249163	34249382	.	-	.	Parent=Os02t0803225-00
Chr02	irgsp1_rep	five_prime_UTR	34249034	34249080	.	-	.	Parent=Os02t0803225-00
Chr02	irgsp1_rep	five_prime_UTR	34248499	34248596	.	-	.	Parent=Os02t0803225-00
Chr02	irgsp1_rep	five_prime_UTR	34248247	34248389	.	-	.	Parent=Os02t0803225-00
Chr02	irgsp1_rep	five_prime_UTR	34247463	34247600	.	-	.	Parent=Os02t0803225-00
Chr02	irgsp1_rep	five_prime_UTR	34247083	34247346	.	-	.	Parent=Os02t0803225-00
Chr02	irgsp1_rep	five_prime_UTR	34246347	34246433	.	-	.	Parent=Os02t0803225-00
Chr02	irgsp1_rep	five_prime_UTR	34245620	34245778	.	-	.	Parent=Os02t0803225-00
Chr02	irgsp1_rep	five_prime_UTR	34244658	34244812	.	-	.	Parent=Os02t0803225-00
Chr02	irgsp1_rep	five_prime_UTR	34244560	34244577	.	-	.	Parent=Os02t0803225-00
Chr02	irgsp1_rep	CDS	34244414	34244559	.	-	0	Parent=Os02t0803225-00
Chr02	irgsp1_rep	CDS	34243635	34243716	.	-	1	Parent=Os02t0803225-00
Chr02	irgsp1_rep	CDS	34242859	34242902	.	-	0	Parent=Os02t0803225-00
Chr02	irgsp1_rep	CDS	34239328	34239397	.	-	1	Parent=Os02t0803225-00
Chr02	irgsp1_rep	three_prime_UTR	34238999	34239327	.	-	.	Parent=Os02t0803225-00
Chr02	irgsp1_rep	mRNA	34242810	34252960	.	+	.	ID=Os02t0803250-00;Name=Os02t0803250-00;Locus_id=Os02g0803250;Note=Similar to predicted protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8AEE4 (UniProt);InterPro=Mak10 subunit%2C NatC N(alpha)-terminal acetyltransferase (IPR007244);TENOR=Os02t0803250-00;KEGG=Os02t0803250-00
Chr02	irgsp1_rep	CDS	34242810	34242921	.	+	0	Parent=Os02t0803250-00
Chr02	irgsp1_rep	CDS	34243651	34243718	.	+	2	Parent=Os02t0803250-00
Chr02	irgsp1_rep	CDS	34244416	34244574	.	+	0	Parent=Os02t0803250-00
Chr02	irgsp1_rep	CDS	34245632	34245785	.	+	0	Parent=Os02t0803250-00
Chr02	irgsp1_rep	CDS	34246352	34246431	.	+	2	Parent=Os02t0803250-00
Chr02	irgsp1_rep	CDS	34247074	34247346	.	+	0	Parent=Os02t0803250-00
Chr02	irgsp1_rep	CDS	34247463	34247606	.	+	0	Parent=Os02t0803250-00
Chr02	irgsp1_rep	CDS	34248257	34248391	.	+	0	Parent=Os02t0803250-00
Chr02	irgsp1_rep	CDS	34250131	34250208	.	+	0	Parent=Os02t0803250-00
Chr02	irgsp1_rep	CDS	34250286	34250384	.	+	0	Parent=Os02t0803250-00
Chr02	irgsp1_rep	CDS	34250471	34250633	.	+	0	Parent=Os02t0803250-00
Chr02	irgsp1_rep	CDS	34252719	34252960	.	+	2	Parent=Os02t0803250-00
Chr02	irgsp1_rep	mRNA	34255764	34260552	.	+	.	ID=Os02t0803300-01;Name=Os02t0803300-01;Locus_id=Os02g0803300;Note=Epsin-like%2C N-terminal domain containing protein.;Transcript_evidence=AK101538 (DDBJ%2C Best hit);ORF_evidence=NP_198370.1 (RefSeq);GO=Biological Process: clathrin coat assembly (GO:0048268),Cellular Component: clathrin coat (GO:0030118),Molecular Function: phospholipid binding (GO:0005543),Molecular Function: 1-phosphatidylinositol binding (GO:0005545),Molecular Function: clathrin binding (GO:0030276);InterPro=ENTH/VHS (IPR008942),ANTH (IPR011417),Epsin-like%2C N-terminal (IPR013809),Clathrin adaptor%2C phosphoinositide-binding%2C GAT-like (IPR014712);NIAS_FLcDNA=J033048F22;Expression=AK101538;TENOR=Os02t0803300-01;KEGG=Os02t0803300-01
Chr02	irgsp1_rep	five_prime_UTR	34255764	34255901	.	+	.	Parent=Os02t0803300-01
Chr02	irgsp1_rep	five_prime_UTR	34256746	34256778	.	+	.	Parent=Os02t0803300-01
Chr02	irgsp1_rep	CDS	34256779	34256871	.	+	0	Parent=Os02t0803300-01
Chr02	irgsp1_rep	CDS	34256958	34257027	.	+	0	Parent=Os02t0803300-01
Chr02	irgsp1_rep	CDS	34257138	34257235	.	+	2	Parent=Os02t0803300-01
Chr02	irgsp1_rep	CDS	34257519	34257660	.	+	0	Parent=Os02t0803300-01
Chr02	irgsp1_rep	CDS	34257768	34257868	.	+	2	Parent=Os02t0803300-01
Chr02	irgsp1_rep	CDS	34258140	34258223	.	+	0	Parent=Os02t0803300-01
Chr02	irgsp1_rep	CDS	34258321	34258371	.	+	0	Parent=Os02t0803300-01
Chr02	irgsp1_rep	CDS	34258456	34258521	.	+	0	Parent=Os02t0803300-01
Chr02	irgsp1_rep	CDS	34258609	34258674	.	+	0	Parent=Os02t0803300-01
Chr02	irgsp1_rep	CDS	34258831	34258911	.	+	0	Parent=Os02t0803300-01
Chr02	irgsp1_rep	CDS	34258996	34259073	.	+	0	Parent=Os02t0803300-01
Chr02	irgsp1_rep	CDS	34259194	34259355	.	+	0	Parent=Os02t0803300-01
Chr02	irgsp1_rep	CDS	34259443	34259518	.	+	0	Parent=Os02t0803300-01
Chr02	irgsp1_rep	CDS	34259618	34259730	.	+	2	Parent=Os02t0803300-01
Chr02	irgsp1_rep	CDS	34259830	34260258	.	+	0	Parent=Os02t0803300-01
Chr02	irgsp1_rep	three_prime_UTR	34260259	34260552	.	+	.	Parent=Os02t0803300-01
Chr02	irgsp1_rep	mRNA	34260822	34263088	.	-	.	ID=Os02t0803400-01;Name=Os02t0803400-01;Locus_id=Os02g0803400;Note=Vacuolar protein sorting 55 family protein.;Transcript_evidence=AK108222 (DDBJ%2C Best hit);ORF_evidence=NP_001077644.1 (RefSeq);InterPro=Vacuolar protein sorting 55 (IPR007262);NIAS_FLcDNA=002-140-E11;Expression=AK108222;TENOR=Os02t0803400-01;KEGG=Os02t0803400-01
Chr02	irgsp1_rep	five_prime_UTR	34262853	34263088	.	-	.	Parent=Os02t0803400-01
Chr02	irgsp1_rep	five_prime_UTR	34261968	34261981	.	-	.	Parent=Os02t0803400-01
Chr02	irgsp1_rep	CDS	34261878	34261967	.	-	0	Parent=Os02t0803400-01
Chr02	irgsp1_rep	CDS	34261743	34261782	.	-	0	Parent=Os02t0803400-01
Chr02	irgsp1_rep	CDS	34261581	34261665	.	-	2	Parent=Os02t0803400-01
Chr02	irgsp1_rep	CDS	34261077	34261272	.	-	1	Parent=Os02t0803400-01
Chr02	irgsp1_rep	three_prime_UTR	34260822	34261076	.	-	.	Parent=Os02t0803400-01
Chr02	irgsp1_rep	mRNA	34260302	34261745	.	-	.	ID=Os02t0803400-02;Name=Os02t0803400-02;Locus_id=Os02g0803400;Note=Similar to vacuolar protein sorting 55 containing protein.;Transcript_evidence=AK107299 (DDBJ%2C Best hit);ORF_evidence=NP_001077644.1 (RefSeq);InterPro=Vacuolar protein sorting 55 (IPR007262);NIAS_FLcDNA=002-126-C07;Expression=AK107299;TENOR=Os02t0803400-02;KEGG=Os02t0803400-02
Chr02	irgsp1_rep	five_prime_UTR	34261284	34261745	.	-	.	Parent=Os02t0803400-02
Chr02	irgsp1_rep	CDS	34261077	34261283	.	-	0	Parent=Os02t0803400-02
Chr02	irgsp1_rep	three_prime_UTR	34260302	34261076	.	-	.	Parent=Os02t0803400-02
Chr02	irgsp1_rep	mRNA	34263983	34265763	.	+	.	ID=Os02t0803600-01;Name=Os02t0803600-01;Locus_id=Os02g0803600;CGSNL Gene Symbol=VAMP71112;CGSNL Gene Name=VESICLE-ASSOCIATED MEMBRANE PROTEIN 7112;Oryzabase Gene Symbol Synonym(s)=OsVAMP7112;Oryzabase Gene Name Synonym(s)=vesicle-associated membrane protein 7112;Note=Longin domain containing protein.;Transcript_evidence=AK064750 (DDBJ%2C Best hit);ORF_evidence=B6U726 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: integral to membrane (GO:0016021);InterPro=Synaptobrevin (IPR001388),Longin (IPR010908),Longin-like (IPR011012);NIAS_FLcDNA=002-120-F06;Oryzabase=21043;Expression=AK064750;TENOR=Os02t0803600-01;KEGG=Os02t0803600-01
Chr02	irgsp1_rep	five_prime_UTR	34263983	34264065	.	+	.	Parent=Os02t0803600-01
Chr02	irgsp1_rep	CDS	34264066	34264303	.	+	0	Parent=Os02t0803600-01
Chr02	irgsp1_rep	CDS	34264754	34264944	.	+	2	Parent=Os02t0803600-01
Chr02	irgsp1_rep	CDS	34265137	34265300	.	+	0	Parent=Os02t0803600-01
Chr02	irgsp1_rep	CDS	34265513	34265600	.	+	1	Parent=Os02t0803600-01
Chr02	irgsp1_rep	three_prime_UTR	34265601	34265763	.	+	.	Parent=Os02t0803600-01
Chr02	irgsp1_rep	mRNA	34266081	34269923	.	-	.	ID=Os02t0803700-01;Name=Os02t0803700-01;Locus_id=Os02g0803700;Oryzabase Gene Symbol Synonym(s)=TBPOs-1%2C OsRpt5a%2C Rpt5a;Oryzabase Gene Name Synonym(s)=rice homolog of HIV-1 Tat binding protein-1%2C homolog of human TBP-1%2C 19S regulatory particle ATPase subunit 5a%2C RP triple A-ATPase 5a;Note=Similar to 26S protease regulatory subunit 6A homolog (TAT-binding protein homolog 1) (TBP-1).;Transcript_evidence=AK101474 (DDBJ%2C Best hit),AK062185 (DDBJ%2C Best hit),AK103936 (DDBJ%2C Best hit);ORF_evidence=P46465 (UniProt);GO=Biological Process: protein catabolic process (GO:0030163),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960),26S proteasome subunit P45 (IPR005937);NIAS_FLcDNA=J033040L18,001-046-E03,001-013-G01;Oryzabase=15762;Expression=AK101474;TENOR=Os02t0803700-01;KEGG=Os02t0803700-01
Chr02	irgsp1_rep	five_prime_UTR	34269856	34269923	.	-	.	Parent=Os02t0803700-01
Chr02	irgsp1_rep	CDS	34269721	34269855	.	-	0	Parent=Os02t0803700-01
Chr02	irgsp1_rep	CDS	34269490	34269606	.	-	0	Parent=Os02t0803700-01
Chr02	irgsp1_rep	CDS	34268816	34268923	.	-	0	Parent=Os02t0803700-01
Chr02	irgsp1_rep	CDS	34268309	34268500	.	-	0	Parent=Os02t0803700-01
Chr02	irgsp1_rep	CDS	34267944	34268135	.	-	0	Parent=Os02t0803700-01
Chr02	irgsp1_rep	CDS	34267469	34267587	.	-	0	Parent=Os02t0803700-01
Chr02	irgsp1_rep	CDS	34267294	34267381	.	-	1	Parent=Os02t0803700-01
Chr02	irgsp1_rep	CDS	34266931	34267050	.	-	0	Parent=Os02t0803700-01
Chr02	irgsp1_rep	CDS	34266658	34266798	.	-	0	Parent=Os02t0803700-01
Chr02	irgsp1_rep	CDS	34266240	34266317	.	-	0	Parent=Os02t0803700-01
Chr02	irgsp1_rep	three_prime_UTR	34266081	34266239	.	-	.	Parent=Os02t0803700-01
Chr02	irgsp1_rep	mRNA	34266075	34269898	.	-	.	ID=Os02t0803700-03;Name=Os02t0803700-03;Locus_id=Os02g0803700;Oryzabase Gene Symbol Synonym(s)=TBPOs-1%2C OsRpt5a%2C Rpt5a;Oryzabase Gene Name Synonym(s)=rice homolog of HIV-1 Tat binding protein-1%2C homolog of human TBP-1%2C 19S regulatory particle ATPase subunit 5a%2C RP triple A-ATPase 5a;Note=Similar to 26S protease regulatory subunit 6A homolog.;Transcript_evidence=AK067051 (DDBJ%2C Best hit);ORF_evidence=P46465 (UniProt);NIAS_FLcDNA=J013093O11;Oryzabase=15762;Expression=AK067051;TENOR=Os02t0803700-03;KEGG=Os02t0803700-03
Chr02	irgsp1_rep	five_prime_UTR	34269856	34269898	.	-	.	Parent=Os02t0803700-03
Chr02	irgsp1_rep	CDS	34269721	34269855	.	-	0	Parent=Os02t0803700-03
Chr02	irgsp1_rep	CDS	34269490	34269606	.	-	0	Parent=Os02t0803700-03
Chr02	irgsp1_rep	CDS	34268866	34268923	.	-	0	Parent=Os02t0803700-03
Chr02	irgsp1_rep	CDS	34268413	34268447	.	-	2	Parent=Os02t0803700-03
Chr02	irgsp1_rep	three_prime_UTR	34268309	34268412	.	-	.	Parent=Os02t0803700-03
Chr02	irgsp1_rep	three_prime_UTR	34267944	34268135	.	-	.	Parent=Os02t0803700-03
Chr02	irgsp1_rep	three_prime_UTR	34267469	34267587	.	-	.	Parent=Os02t0803700-03
Chr02	irgsp1_rep	three_prime_UTR	34267294	34267381	.	-	.	Parent=Os02t0803700-03
Chr02	irgsp1_rep	three_prime_UTR	34266931	34267050	.	-	.	Parent=Os02t0803700-03
Chr02	irgsp1_rep	three_prime_UTR	34266658	34266798	.	-	.	Parent=Os02t0803700-03
Chr02	irgsp1_rep	three_prime_UTR	34266075	34266317	.	-	.	Parent=Os02t0803700-03
Chr02	irgsp1_rep	mRNA	34275373	34276952	.	-	.	ID=Os02t0803800-01;Name=Os02t0803800-01;Locus_id=Os02g0803800;Note=Peptidase S8 and S53%2C subtilisin%2C kexin%2C sedolisin domain containing protein.;Transcript_evidence=AK109780 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-147-B12;Expression=AK109780;TENOR=Os02t0803800-01;KEGG=Os02t0803800-01
Chr02	irgsp1_rep	five_prime_UTR	34276404	34276952	.	-	.	Parent=Os02t0803800-01
Chr02	irgsp1_rep	CDS	34275507	34276403	.	-	0	Parent=Os02t0803800-01
Chr02	irgsp1_rep	three_prime_UTR	34275373	34275506	.	-	.	Parent=Os02t0803800-01
Chr02	irgsp1_rep	mRNA	34275502	34277324	.	+	.	ID=Os02t0803900-01;Name=Os02t0803900-01;Locus_id=Os02g0803900;Note=UDP-glucuronosyl/UDP-glucosyltransferase domain containing protein.;Transcript_evidence=AK106930 (DDBJ%2C Best hit);ORF_evidence=NP_001051624.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=002-119-C02;TENOR=Os02t0803900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	34275502	34276950	.	+	0	Parent=Os02t0803900-01
Chr02	irgsp1_rep	three_prime_UTR	34276951	34277324	.	+	.	Parent=Os02t0803900-01
Chr02	irgsp1_rep	mRNA	34287726	34288325	.	-	.	ID=Os02t0804000-01;Name=Os02t0804000-01;Locus_id=Os02g0804000;RAP-DB Gene Symbol Synonym(s)=OsmiR396c;Note=Primary microRNA of OsmiR396c%3B Target gene(s): OsGRF4 (Os02g0701300)%2C Control of grain size and yield;Transcript_evidence=AK062523;ORF_evidence=NONE;NIAS_FLcDNA=001-104-D07;Manual Curation=December 8%2C 2017;Literature_PMID=27107174;TENOR=Os02t0804000-01
Chr02	irgsp1_rep	exon	34287726	34288325	.	-	.	Parent=Os02t0804000-01
Chr02	irgsp1_rep	mRNA	34287203	34287866	.	-	.	ID=Os02t0804000-02;Name=Os02t0804000-02;Locus_id=Os02g0804000;Note=Non-protein coding transcript.;Transcript_evidence=AK069236 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023012C08;TENOR=Os02t0804000-02
Chr02	irgsp1_rep	exon	34287203	34287866	.	-	.	Parent=Os02t0804000-02
Chr02	irgsp1_rep	mRNA	34295918	34296452	.	-	.	ID=Os02t0804100-01;Name=Os02t0804100-01;Locus_id=Os02g0804100;CGSNL Gene Symbol=RPS30;CGSNL Gene Name=RIBOSOMAL PROTEIN S30;Oryzabase Gene Symbol Synonym(s)=OsRPS30;Oryzabase Gene Name Synonym(s)=ribosomal protein S30%2C ribosomal protein small subunit 30;Note=Similar to predicted protein.;Transcript_evidence=AK243401 (DDBJ%2C Best hit);ORF_evidence=B6SLI1 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S30 (IPR006846);NIAS_FLcDNA=J100064M01;Oryzabase=22189;TENOR=Os02t0804100-01;KEGG=Os02t0804100-01
Chr02	irgsp1_rep	five_prime_UTR	34296385	34296452	.	-	.	Parent=Os02t0804100-01
Chr02	irgsp1_rep	CDS	34296381	34296384	.	-	0	Parent=Os02t0804100-01
Chr02	irgsp1_rep	CDS	34296085	34296269	.	-	2	Parent=Os02t0804100-01
Chr02	irgsp1_rep	three_prime_UTR	34295918	34296084	.	-	.	Parent=Os02t0804100-01
Chr02	irgsp1_rep	mRNA	34296616	34299420	.	+	.	ID=Os02t0804300-01;Name=Os02t0804300-01;Locus_id=Os02g0804300;Note=Methyltransferase type 11 domain containing protein.;Transcript_evidence=AK067584 (DDBJ%2C Best hit);ORF_evidence=B6TAS9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Methyltransferase type 11 (IPR013216),Uncharacterised protein family%2C methyltransferase%2C Williams-Beuren syndrome (IPR022238);NIAS_FLcDNA=J013112C12;Expression=AK067584;TENOR=Os02t0804300-01;KEGG=Os02t0804300-01
Chr02	irgsp1_rep	five_prime_UTR	34296616	34296705	.	+	.	Parent=Os02t0804300-01
Chr02	irgsp1_rep	CDS	34296706	34296801	.	+	0	Parent=Os02t0804300-01
Chr02	irgsp1_rep	CDS	34296872	34296947	.	+	0	Parent=Os02t0804300-01
Chr02	irgsp1_rep	CDS	34297055	34297138	.	+	2	Parent=Os02t0804300-01
Chr02	irgsp1_rep	CDS	34297236	34297291	.	+	2	Parent=Os02t0804300-01
Chr02	irgsp1_rep	CDS	34297809	34297865	.	+	0	Parent=Os02t0804300-01
Chr02	irgsp1_rep	CDS	34297966	34298015	.	+	0	Parent=Os02t0804300-01
Chr02	irgsp1_rep	CDS	34298094	34298246	.	+	1	Parent=Os02t0804300-01
Chr02	irgsp1_rep	CDS	34298349	34298499	.	+	1	Parent=Os02t0804300-01
Chr02	irgsp1_rep	CDS	34298976	34299140	.	+	0	Parent=Os02t0804300-01
Chr02	irgsp1_rep	three_prime_UTR	34299141	34299420	.	+	.	Parent=Os02t0804300-01
Chr02	irgsp1_rep	mRNA	34296738	34299372	.	+	.	ID=Os02t0804300-02;Name=Os02t0804300-02;Locus_id=Os02g0804300;Note=Similar to Methyltransferase WBSCR22.;Transcript_evidence=AK060165 (DDBJ%2C Best hit);ORF_evidence=B6TAS9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Methyltransferase type 11 (IPR013216),Uncharacterised protein family%2C methyltransferase%2C Williams-Beuren syndrome (IPR022238);NIAS_FLcDNA=006-311-C07;Expression=AK060165;TENOR=Os02t0804300-02;KEGG=Os02t0804300-02
Chr02	irgsp1_rep	five_prime_UTR	34296738	34296738	.	+	.	Parent=Os02t0804300-02
Chr02	irgsp1_rep	CDS	34296739	34296801	.	+	0	Parent=Os02t0804300-02
Chr02	irgsp1_rep	CDS	34296872	34296947	.	+	0	Parent=Os02t0804300-02
Chr02	irgsp1_rep	CDS	34297055	34297138	.	+	2	Parent=Os02t0804300-02
Chr02	irgsp1_rep	CDS	34297236	34297291	.	+	2	Parent=Os02t0804300-02
Chr02	irgsp1_rep	CDS	34297809	34297865	.	+	0	Parent=Os02t0804300-02
Chr02	irgsp1_rep	CDS	34297966	34298015	.	+	0	Parent=Os02t0804300-02
Chr02	irgsp1_rep	CDS	34298094	34298246	.	+	1	Parent=Os02t0804300-02
Chr02	irgsp1_rep	CDS	34298349	34298499	.	+	1	Parent=Os02t0804300-02
Chr02	irgsp1_rep	CDS	34298976	34299140	.	+	0	Parent=Os02t0804300-02
Chr02	irgsp1_rep	three_prime_UTR	34299141	34299372	.	+	.	Parent=Os02t0804300-02
Chr02	irgsp1_rep	mRNA	34299464	34300632	.	+	.	ID=Os02t0804400-01;Name=Os02t0804400-01;Locus_id=Os02g0804400;Note=Conserved hypothetical protein.;Transcript_evidence=AK062322 (DDBJ%2C Best hit);ORF_evidence=A2XAQ4 (UniProt);NIAS_FLcDNA=001-101-C12;Expression=AK062322;TENOR=Os02t0804400-01;KEGG=Os02t0804400-01
Chr02	irgsp1_rep	five_prime_UTR	34299464	34299562	.	+	.	Parent=Os02t0804400-01
Chr02	irgsp1_rep	CDS	34299563	34299745	.	+	0	Parent=Os02t0804400-01
Chr02	irgsp1_rep	CDS	34300136	34300321	.	+	0	Parent=Os02t0804400-01
Chr02	irgsp1_rep	three_prime_UTR	34300322	34300632	.	+	.	Parent=Os02t0804400-01
Chr02	irgsp1_rep	mRNA	34300634	34307611	.	-	.	ID=Os02t0804500-01;Name=Os02t0804500-01;Locus_id=Os02g0804500;Oryzabase Gene Symbol Synonym(s)=OsDjA2;Oryzabase Gene Name Synonym(s)=DnaJ domain protein A2%2C rice DJA4 homolog;Note=Molecular chaperone%2C heat shock protein%2C Hsp40%2C DnaJ domain containing protein.;Transcript_evidence=AK068801 (DDBJ%2C Best hit);ORF_evidence=B6U659 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: response to heat (GO:0009408),Molecular Function: ATP binding (GO:0005524),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C cysteine-rich domain (IPR001305),Heat shock protein DnaJ%2C N-terminal (IPR001623),Chaperone DnaJ%2C C-terminal (IPR002939),Heat shock protein DnaJ (IPR003095),HSP40/DnaJ peptide-binding (IPR008971),Chaperone DnaJ (IPR012724),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=J013160I05;Oryzabase=12139;Expression=AK068801;TENOR=Os02t0804500-01;KEGG=Os02t0804500-01
Chr02	irgsp1_rep	five_prime_UTR	34307569	34307611	.	-	.	Parent=Os02t0804500-01
Chr02	irgsp1_rep	CDS	34307278	34307568	.	-	0	Parent=Os02t0804500-01
Chr02	irgsp1_rep	CDS	34306179	34306247	.	-	0	Parent=Os02t0804500-01
Chr02	irgsp1_rep	CDS	34305883	34305975	.	-	0	Parent=Os02t0804500-01
Chr02	irgsp1_rep	CDS	34305275	34305396	.	-	0	Parent=Os02t0804500-01
Chr02	irgsp1_rep	CDS	34304380	34304575	.	-	1	Parent=Os02t0804500-01
Chr02	irgsp1_rep	CDS	34303562	34303737	.	-	0	Parent=Os02t0804500-01
Chr02	irgsp1_rep	CDS	34303109	34303238	.	-	1	Parent=Os02t0804500-01
Chr02	irgsp1_rep	CDS	34302187	34302347	.	-	0	Parent=Os02t0804500-01
Chr02	irgsp1_rep	CDS	34302005	34302084	.	-	1	Parent=Os02t0804500-01
Chr02	irgsp1_rep	CDS	34301743	34301842	.	-	2	Parent=Os02t0804500-01
Chr02	irgsp1_rep	CDS	34301065	34301110	.	-	1	Parent=Os02t0804500-01
Chr02	irgsp1_rep	three_prime_UTR	34300634	34301064	.	-	.	Parent=Os02t0804500-01
Chr02	irgsp1_rep	mRNA	34309668	34324086	.	-	.	ID=Os02t0804600-00;Name=Os02t0804600-00;Locus_id=Os02g0804600;CGSNL Gene Symbol=STR15;CGSNL Gene Name=SULFURTRANSFERASE 15;Oryzabase Gene Symbol Synonym(s)=OsStr15;Oryzabase Gene Name Synonym(s)=Sulfurtransferase 15;Note=Similar to Adenylyltransferase and sulfurtransferase MOCS3.;Transcript_evidence=BT064283 (DDBJ);ORF_evidence=A3ACF3 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824);InterPro=UBA/THIF-type NAD/FAD binding fold (IPR000594),Rhodanese-like (IPR001763),MoeZ/MoeB (IPR007901),Molybdenum cofactor biosynthesis%2C MoeB (IPR009036),NAD(P)-binding domain (IPR016040);Oryzabase=12065;TENOR=Os02t0804600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	34323648	34324086	.	-	0	Parent=Os02t0804600-00
Chr02	irgsp1_rep	CDS	34323357	34323412	.	-	2	Parent=Os02t0804600-00
Chr02	irgsp1_rep	CDS	34322990	34323054	.	-	0	Parent=Os02t0804600-00
Chr02	irgsp1_rep	CDS	34322797	34322871	.	-	1	Parent=Os02t0804600-00
Chr02	irgsp1_rep	CDS	34322632	34322710	.	-	1	Parent=Os02t0804600-00
Chr02	irgsp1_rep	CDS	34311354	34311392	.	-	0	Parent=Os02t0804600-00
Chr02	irgsp1_rep	CDS	34311166	34311274	.	-	0	Parent=Os02t0804600-00
Chr02	irgsp1_rep	CDS	34310574	34310692	.	-	2	Parent=Os02t0804600-00
Chr02	irgsp1_rep	CDS	34310345	34310464	.	-	0	Parent=Os02t0804600-00
Chr02	irgsp1_rep	CDS	34309675	34310064	.	-	0	Parent=Os02t0804600-00
Chr02	irgsp1_rep	three_prime_UTR	34309668	34309674	.	-	.	Parent=Os02t0804600-00
Chr02	irgsp1_rep	mRNA	34325216	34327600	.	+	.	ID=Os02t0804800-01;Name=Os02t0804800-01;Locus_id=Os02g0804800;Note=Conserved hypothetical protein.;Transcript_evidence=AK240735 (DDBJ%2C Best hit);ORF_evidence=Q6K849 (UniProt);NIAS_FLcDNA=J043034A02;TENOR=Os02t0804800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	34325216	34325311	.	+	.	Parent=Os02t0804800-01
Chr02	irgsp1_rep	CDS	34325312	34325347	.	+	0	Parent=Os02t0804800-01
Chr02	irgsp1_rep	CDS	34325490	34325572	.	+	0	Parent=Os02t0804800-01
Chr02	irgsp1_rep	CDS	34326589	34326718	.	+	1	Parent=Os02t0804800-01
Chr02	irgsp1_rep	three_prime_UTR	34326719	34327600	.	+	.	Parent=Os02t0804800-01
Chr02	irgsp1_rep	mRNA	34327974	34333015	.	+	.	ID=Os02t0804900-01;Name=Os02t0804900-01;Locus_id=Os02g0804900;RAP-DB Gene Symbol Synonym(s)=RNRL2;RAP-DB Gene Name Synonym(s)=RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 2;CGSNL Gene Symbol=RNRL2;CGSNL Gene Name=RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 2;Note=Ribonucleotide reductase%2C Chloroplast biogenesis;Transcript_evidence=EU602346 (Genbank);ORF_evidence=Q6K848 (UniProt);GO=Biological Process: DNA replication (GO:0006260),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: ribonucleoside-diphosphate reductase complex (GO:0005971),Molecular Function: ribonucleoside-diphosphate reductase activity (GO:0004748),Molecular Function: ATP binding (GO:0005524);InterPro=Ribonucleotide reductase large subunit%2C C-terminal (IPR000788),ATP-cone (IPR005144),Ribonucleotide reductase R1 subunit%2C N-terminal (IPR008926),Ribonucleoside-diphosphate reductase%2C alpha subunit (IPR013346),Ribonucleotide reductase large subunit%2C N-terminal (IPR013509);Manual Curation=June 8%2C 2009;Literature_PMID=19297585;Oryzabase=9031;TENOR=Os02t0804900-00
Chr02	irgsp1_rep	five_prime_UTR	34327974	34328400	.	+	.	Parent=Os02t0804900-01
Chr02	irgsp1_rep	CDS	34328401	34328628	.	+	0	Parent=Os02t0804900-01
Chr02	irgsp1_rep	CDS	34328729	34328790	.	+	0	Parent=Os02t0804900-01
Chr02	irgsp1_rep	CDS	34328880	34328967	.	+	1	Parent=Os02t0804900-01
Chr02	irgsp1_rep	CDS	34329512	34329775	.	+	0	Parent=Os02t0804900-01
Chr02	irgsp1_rep	CDS	34329853	34330093	.	+	0	Parent=Os02t0804900-01
Chr02	irgsp1_rep	CDS	34330179	34330255	.	+	2	Parent=Os02t0804900-01
Chr02	irgsp1_rep	CDS	34330344	34330514	.	+	0	Parent=Os02t0804900-01
Chr02	irgsp1_rep	CDS	34330591	34330683	.	+	0	Parent=Os02t0804900-01
Chr02	irgsp1_rep	CDS	34330764	34330913	.	+	0	Parent=Os02t0804900-01
Chr02	irgsp1_rep	CDS	34330998	34331084	.	+	0	Parent=Os02t0804900-01
Chr02	irgsp1_rep	CDS	34331163	34331327	.	+	0	Parent=Os02t0804900-01
Chr02	irgsp1_rep	CDS	34331407	34331526	.	+	0	Parent=Os02t0804900-01
Chr02	irgsp1_rep	CDS	34331751	34331953	.	+	0	Parent=Os02t0804900-01
Chr02	irgsp1_rep	CDS	34332054	34332203	.	+	1	Parent=Os02t0804900-01
Chr02	irgsp1_rep	CDS	34332286	34332433	.	+	1	Parent=Os02t0804900-01
Chr02	irgsp1_rep	CDS	34332553	34332636	.	+	0	Parent=Os02t0804900-01
Chr02	irgsp1_rep	CDS	34332714	34332815	.	+	0	Parent=Os02t0804900-01
Chr02	irgsp1_rep	three_prime_UTR	34332816	34333015	.	+	.	Parent=Os02t0804900-01
Chr02	irgsp1_rep	mRNA	34328237	34333069	.	-	.	ID=Os02t0804933-01;Name=Os02t0804933-01;Locus_id=Os02g0804933;Note=Non-protein coding transcript.;Transcript_evidence=AK241849 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065215B06;TENOR=Os02t0804933-01
Chr02	irgsp1_rep	exon	34332714	34333069	.	-	.	Parent=Os02t0804933-01
Chr02	irgsp1_rep	exon	34332553	34332636	.	-	.	Parent=Os02t0804933-01
Chr02	irgsp1_rep	exon	34332286	34332433	.	-	.	Parent=Os02t0804933-01
Chr02	irgsp1_rep	exon	34332054	34332203	.	-	.	Parent=Os02t0804933-01
Chr02	irgsp1_rep	exon	34331751	34331953	.	-	.	Parent=Os02t0804933-01
Chr02	irgsp1_rep	exon	34331407	34331526	.	-	.	Parent=Os02t0804933-01
Chr02	irgsp1_rep	exon	34331163	34331327	.	-	.	Parent=Os02t0804933-01
Chr02	irgsp1_rep	exon	34330998	34331084	.	-	.	Parent=Os02t0804933-01
Chr02	irgsp1_rep	exon	34330764	34330913	.	-	.	Parent=Os02t0804933-01
Chr02	irgsp1_rep	exon	34330591	34330683	.	-	.	Parent=Os02t0804933-01
Chr02	irgsp1_rep	exon	34330344	34330514	.	-	.	Parent=Os02t0804933-01
Chr02	irgsp1_rep	exon	34330179	34330255	.	-	.	Parent=Os02t0804933-01
Chr02	irgsp1_rep	exon	34329853	34330093	.	-	.	Parent=Os02t0804933-01
Chr02	irgsp1_rep	exon	34329512	34329775	.	-	.	Parent=Os02t0804933-01
Chr02	irgsp1_rep	exon	34328880	34328967	.	-	.	Parent=Os02t0804933-01
Chr02	irgsp1_rep	exon	34328729	34328790	.	-	.	Parent=Os02t0804933-01
Chr02	irgsp1_rep	exon	34328237	34328628	.	-	.	Parent=Os02t0804933-01
Chr02	irgsp1_rep	mRNA	34336386	34344186	.	-	.	ID=Os02t0805000-01;Name=Os02t0805000-01;Locus_id=Os02g0805000;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=AK071884 (DDBJ%2C Best hit);ORF_evidence=B6SV75 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: protein transport (GO:0015031),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: Golgi apparatus (GO:0005794),Cellular Component: membrane coat (GO:0030117),Molecular Function: binding (GO:0005488),Molecular Function: protein transporter activity (GO:0008565);InterPro=Clathrin/coatomer adaptor%2C adaptin-like%2C N-terminal (IPR002553),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),Adaptor protein complex AP-1%2C gamma subunit (IPR017107);NIAS_FLcDNA=J013047F12;Expression=AK071884;TENOR=Os02t0805000-01;KEGG=Os02t0805000-01
Chr02	irgsp1_rep	five_prime_UTR	34344030	34344186	.	-	.	Parent=Os02t0805000-01
Chr02	irgsp1_rep	CDS	34343950	34344029	.	-	0	Parent=Os02t0805000-01
Chr02	irgsp1_rep	CDS	34343530	34343832	.	-	1	Parent=Os02t0805000-01
Chr02	irgsp1_rep	CDS	34343283	34343424	.	-	1	Parent=Os02t0805000-01
Chr02	irgsp1_rep	CDS	34342821	34342994	.	-	0	Parent=Os02t0805000-01
Chr02	irgsp1_rep	CDS	34342330	34342509	.	-	0	Parent=Os02t0805000-01
Chr02	irgsp1_rep	CDS	34341687	34341841	.	-	0	Parent=Os02t0805000-01
Chr02	irgsp1_rep	CDS	34341388	34341478	.	-	1	Parent=Os02t0805000-01
Chr02	irgsp1_rep	CDS	34340761	34340924	.	-	0	Parent=Os02t0805000-01
Chr02	irgsp1_rep	CDS	34340627	34340681	.	-	1	Parent=Os02t0805000-01
Chr02	irgsp1_rep	CDS	34340167	34340289	.	-	0	Parent=Os02t0805000-01
Chr02	irgsp1_rep	CDS	34340064	34340066	.	-	0	Parent=Os02t0805000-01
Chr02	irgsp1_rep	three_prime_UTR	34339981	34340063	.	-	.	Parent=Os02t0805000-01
Chr02	irgsp1_rep	three_prime_UTR	34339450	34339577	.	-	.	Parent=Os02t0805000-01
Chr02	irgsp1_rep	three_prime_UTR	34339082	34339186	.	-	.	Parent=Os02t0805000-01
Chr02	irgsp1_rep	three_prime_UTR	34338693	34338982	.	-	.	Parent=Os02t0805000-01
Chr02	irgsp1_rep	three_prime_UTR	34338084	34338188	.	-	.	Parent=Os02t0805000-01
Chr02	irgsp1_rep	three_prime_UTR	34337904	34337969	.	-	.	Parent=Os02t0805000-01
Chr02	irgsp1_rep	three_prime_UTR	34337751	34337825	.	-	.	Parent=Os02t0805000-01
Chr02	irgsp1_rep	three_prime_UTR	34336386	34337668	.	-	.	Parent=Os02t0805000-01
Chr02	irgsp1_rep	mRNA	34348582	34349843	.	+	.	ID=Os02t0805100-01;Name=Os02t0805100-01;Locus_id=Os02g0805100;CGSNL Gene Symbol=IAA9;Oryzabase Gene Symbol Synonym(s)=OsIAA9%2C OsIAA2;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 9;Note=Similar to Auxin-responsive protein IAA12 (Indoleacetic acid-induced protein 12) (BODENLOS protein).;Transcript_evidence=AK073365 (DDBJ%2C Best hit);ORF_evidence=Q6K846 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Aux/IAA-ARF-dimerisation (IPR011525);NIAS_FLcDNA=J033030K18;Oryzabase=10900;Expression=AK073365;TENOR=Os02t0805100-01;KEGG=Os02t0805100-01
Chr02	irgsp1_rep	five_prime_UTR	34348582	34348728	.	+	.	Parent=Os02t0805100-01
Chr02	irgsp1_rep	CDS	34348729	34349128	.	+	0	Parent=Os02t0805100-01
Chr02	irgsp1_rep	CDS	34349263	34349368	.	+	2	Parent=Os02t0805100-01
Chr02	irgsp1_rep	CDS	34349486	34349528	.	+	1	Parent=Os02t0805100-01
Chr02	irgsp1_rep	three_prime_UTR	34349529	34349843	.	+	.	Parent=Os02t0805100-01
Chr02	irgsp1_rep	mRNA	34351407	34353530	.	+	.	ID=Os02t0805200-01;Name=Os02t0805200-01;Locus_id=Os02g0805200;RAP-DB Gene Symbol Synonym(s)=OsPCNA;RAP-DB Gene Name Synonym(s)=proliferating cell nuclear antigen;CGSNL Gene Symbol=PCNA;CGSNL Gene Name=PROLIFERATING CELL NUCLEAR ANTIGEN;Oryzabase Gene Symbol Synonym(s)=OsPCNA;Oryzabase Gene Name Synonym(s)=proliferating cell nuclear antigen%2C Proliferating-cell nuclear antigen%2C DNA polymerase delta auxiliary protein%2C cyclin;Note=Proliferating cell nuclear antigen (PCNA);Transcript_evidence=AK071591,AK243048;ORF_evidence=P17070;GO=Biological Process: regulation of DNA replication (GO:0006275),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA polymerase processivity factor activity (GO:0030337);InterPro=Proliferating cell nuclear antigen%2C PCNA (IPR000730),Proliferating cell nuclear antigen%2C PCNA%2C N-terminal (IPR022648),Proliferating cell nuclear antigen%2C PCNA%2C C-terminal (IPR022649),Proliferating cell nuclear antigen%2C PCNA%2C conserved site (IPR022659);NIAS_FLcDNA=J023105C08,J100010D20;Manual Curation=March 17%2C 2020;Literature_PMID=31200645,27462908;Oryzabase=13034;TENOR=Os02t0805200-01
Chr02	irgsp1_rep	five_prime_UTR	34351407	34351500	.	+	.	Parent=Os02t0805200-01
Chr02	irgsp1_rep	CDS	34351501	34351819	.	+	0	Parent=Os02t0805200-01
Chr02	irgsp1_rep	CDS	34351905	34352057	.	+	2	Parent=Os02t0805200-01
Chr02	irgsp1_rep	CDS	34352155	34352252	.	+	2	Parent=Os02t0805200-01
Chr02	irgsp1_rep	CDS	34353070	34353291	.	+	0	Parent=Os02t0805200-01
Chr02	irgsp1_rep	three_prime_UTR	34353292	34353530	.	+	.	Parent=Os02t0805200-01
Chr02	irgsp1_rep	mRNA	34353730	34356787	.	-	.	ID=Os02t0805250-01;Name=Os02t0805250-01;Locus_id=Os02g0805250;RAP-DB Gene Symbol Synonym(s)=OsbHLH107;RAP-DB Gene Name Synonym(s)=basic helix-loop-helix protein 107;CGSNL Gene Symbol=LGS1;CGSNL Gene Name=LARGER GRAIN SIZE 1;Oryzabase Gene Symbol Synonym(s)=OsbHLH107%2C bHLH107;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 107%2C larger grain size 1;Note=Basic helix-loop-helix transcription factor%2C Regulation of grain size;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Helix-loop-helix DNA-binding domain superfamily (IPR036638),Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);Manual Curation=July 23%2C 2018;Literature_PMID=30030651;Oryzabase=15388;TENOR=Os02t0805250-00;KEGG=Os02t0805250-00;Subcellular location=nucleus (GO:0005634)
Chr02	irgsp1_rep	five_prime_UTR	34356517	34356787	.	-	.	Parent=Os02t0805250-01
Chr02	irgsp1_rep	five_prime_UTR	34356365	34356402	.	-	.	Parent=Os02t0805250-01
Chr02	irgsp1_rep	CDS	34356272	34356364	.	-	0	Parent=Os02t0805250-01
Chr02	irgsp1_rep	CDS	34356091	34356189	.	-	0	Parent=Os02t0805250-01
Chr02	irgsp1_rep	CDS	34355932	34355997	.	-	0	Parent=Os02t0805250-01
Chr02	irgsp1_rep	CDS	34355722	34355787	.	-	0	Parent=Os02t0805250-01
Chr02	irgsp1_rep	CDS	34355028	34355330	.	-	0	Parent=Os02t0805250-01
Chr02	irgsp1_rep	CDS	34354841	34354910	.	-	0	Parent=Os02t0805250-01
Chr02	irgsp1_rep	CDS	34354595	34354736	.	-	2	Parent=Os02t0805250-01
Chr02	irgsp1_rep	CDS	34354147	34354153	.	-	1	Parent=Os02t0805250-01
Chr02	irgsp1_rep	three_prime_UTR	34353730	34354146	.	-	.	Parent=Os02t0805250-01
Chr02	irgsp1_rep	mRNA	34358288	34360428	.	-	.	ID=Os02t0805300-01;Name=Os02t0805300-01;Locus_id=Os02g0805300;Note=Conserved hypothetical protein.;Transcript_evidence=AK100109 (DDBJ%2C Best hit);ORF_evidence=Q948F7 (UniProt);NIAS_FLcDNA=J023004O08;TENOR=Os02t0805300-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	34360075	34360428	.	-	.	Parent=Os02t0805300-01
Chr02	irgsp1_rep	five_prime_UTR	34359896	34359979	.	-	.	Parent=Os02t0805300-01
Chr02	irgsp1_rep	five_prime_UTR	34359099	34359186	.	-	.	Parent=Os02t0805300-01
Chr02	irgsp1_rep	CDS	34358925	34359098	.	-	0	Parent=Os02t0805300-01
Chr02	irgsp1_rep	CDS	34358677	34358829	.	-	0	Parent=Os02t0805300-01
Chr02	irgsp1_rep	CDS	34358388	34358546	.	-	0	Parent=Os02t0805300-01
Chr02	irgsp1_rep	three_prime_UTR	34358288	34358387	.	-	.	Parent=Os02t0805300-01
Chr02	irgsp1_rep	mRNA	34362138	34362686	.	+	.	ID=Os02t0805400-01;Name=Os02t0805400-01;Locus_id=Os02g0805400;Note=Hypothetical conserved gene.;Transcript_evidence=AK288149 (DDBJ%2C Best hit);ORF_evidence=NP_001048440.1 (RefSeq);NIAS_FLcDNA=J080316D02;TENOR=Os02t0805400-01;KEGG=Os02t0805400-01
Chr02	irgsp1_rep	five_prime_UTR	34362138	34362139	.	+	.	Parent=Os02t0805400-01
Chr02	irgsp1_rep	CDS	34362140	34362409	.	+	0	Parent=Os02t0805400-01
Chr02	irgsp1_rep	three_prime_UTR	34362410	34362686	.	+	.	Parent=Os02t0805400-01
Chr02	irgsp1_rep	mRNA	34362624	34365534	.	-	.	ID=Os02t0805500-01;Name=Os02t0805500-01;Locus_id=Os02g0805500;Note=Similar to PAP-specific phosphatase HAL2-like (3'(2')%2C5'-bisphosphate nucleotidase) (EC 3.1.3.7) (3'(2')%2C5-bisphosphonucleoside 3'(2')- phosphohydrolase) (DPNPase) (Halotolerance protein).;Transcript_evidence=AK065057 (DDBJ%2C Best hit);ORF_evidence=NP_001152174.1 (RefSeq);GO=Biological Process: sulfur compound metabolic process (GO:0006790),Molecular Function: inositol or phosphatidylinositol phosphatase activity (GO:0004437),Molecular Function: 3'(2')%2C5'-bisphosphate nucleotidase activity (GO:0008441);InterPro=Inositol monophosphatase (IPR000760),3(2)%2C5 -bisphosphate nucleotidase HAL2 (IPR006239),Inositol monophosphatase%2C conserved site (IPR020550),Inositol monophosphatase%2C metal-binding site (IPR020583);NIAS_FLcDNA=J013001J07;Expression=AK065057;TENOR=Os02t0805500-01;KEGG=Os02t0805500-01 (EC:3.1.3.7)
Chr02	irgsp1_rep	CDS	34365315	34365534	.	-	0	Parent=Os02t0805500-01
Chr02	irgsp1_rep	CDS	34364986	34365210	.	-	2	Parent=Os02t0805500-01
Chr02	irgsp1_rep	CDS	34363688	34364372	.	-	2	Parent=Os02t0805500-01
Chr02	irgsp1_rep	CDS	34363082	34363385	.	-	1	Parent=Os02t0805500-01
Chr02	irgsp1_rep	three_prime_UTR	34362624	34363081	.	-	.	Parent=Os02t0805500-01
Chr02	irgsp1_rep	mRNA	34367480	34369724	.	+	.	ID=Os02t0805600-01;Name=Os02t0805600-01;Locus_id=Os02g0805600;Note=Similar to Alcohol dehydrogenase%2C zinc-containing.;Transcript_evidence=AK099516 (DDBJ%2C Best hit),AK059822 (DDBJ%2C Best hit);ORF_evidence=Q3HVL5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),Quinone oxidoreductase putative%2C PIG3 (IPR014189),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013030C12,006-205-D12;Expression=AK099516;TENOR=Os02t0805600-01;KEGG=Os02t0805600-01 (EC:1.6.5.5)
Chr02	irgsp1_rep	five_prime_UTR	34367480	34367548	.	+	.	Parent=Os02t0805600-01
Chr02	irgsp1_rep	CDS	34367549	34367809	.	+	0	Parent=Os02t0805600-01
Chr02	irgsp1_rep	CDS	34368245	34368424	.	+	0	Parent=Os02t0805600-01
Chr02	irgsp1_rep	CDS	34368506	34368587	.	+	0	Parent=Os02t0805600-01
Chr02	irgsp1_rep	CDS	34368687	34368794	.	+	2	Parent=Os02t0805600-01
Chr02	irgsp1_rep	CDS	34368979	34369137	.	+	2	Parent=Os02t0805600-01
Chr02	irgsp1_rep	CDS	34369321	34369517	.	+	2	Parent=Os02t0805600-01
Chr02	irgsp1_rep	three_prime_UTR	34369518	34369724	.	+	.	Parent=Os02t0805600-01
Chr02	irgsp1_rep	mRNA	34367506	34369719	.	+	.	ID=Os02t0805600-02;Name=Os02t0805600-02;Locus_id=Os02g0805600;Note=Similar to Alcohol dehydrogenase%2C zinc-containing.;Transcript_evidence=AK104587 (DDBJ%2C Best hit);ORF_evidence=Q3HVL5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),Quinone oxidoreductase putative%2C PIG3 (IPR014189),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=006-307-G03;Expression=AK104587;TENOR=Os02t0805600-02;KEGG=Os02t0805600-02 (EC:1.6.5.5)
Chr02	irgsp1_rep	five_prime_UTR	34367506	34367548	.	+	.	Parent=Os02t0805600-02
Chr02	irgsp1_rep	CDS	34367549	34367809	.	+	0	Parent=Os02t0805600-02
Chr02	irgsp1_rep	CDS	34368245	34368424	.	+	0	Parent=Os02t0805600-02
Chr02	irgsp1_rep	CDS	34368506	34368587	.	+	0	Parent=Os02t0805600-02
Chr02	irgsp1_rep	CDS	34368687	34368794	.	+	2	Parent=Os02t0805600-02
Chr02	irgsp1_rep	CDS	34368979	34369137	.	+	2	Parent=Os02t0805600-02
Chr02	irgsp1_rep	CDS	34369321	34369517	.	+	2	Parent=Os02t0805600-02
Chr02	irgsp1_rep	three_prime_UTR	34369518	34369719	.	+	.	Parent=Os02t0805600-02
Chr02	irgsp1_rep	mRNA	34370147	34372049	.	-	.	ID=Os02t0805700-01;Name=Os02t0805700-01;Locus_id=Os02g0805700;Note=Conserved hypothetical protein.;Transcript_evidence=AK073676 (DDBJ%2C Best hit);ORF_evidence=A2XAR5 (UniProt);NIAS_FLcDNA=J033049C20;Expression=AK073676;TENOR=Os02t0805700-01;KEGG=Os02t0805700-01
Chr02	irgsp1_rep	five_prime_UTR	34371997	34372049	.	-	.	Parent=Os02t0805700-01
Chr02	irgsp1_rep	CDS	34371809	34371996	.	-	0	Parent=Os02t0805700-01
Chr02	irgsp1_rep	CDS	34370780	34370891	.	-	1	Parent=Os02t0805700-01
Chr02	irgsp1_rep	CDS	34370646	34370696	.	-	0	Parent=Os02t0805700-01
Chr02	irgsp1_rep	CDS	34370374	34370457	.	-	0	Parent=Os02t0805700-01
Chr02	irgsp1_rep	three_prime_UTR	34370147	34370373	.	-	.	Parent=Os02t0805700-01
Chr02	irgsp1_rep	mRNA	34372439	34378347	.	-	.	ID=Os02t0805800-01;Name=Os02t0805800-01;Locus_id=Os02g0805800;Note=Aminoglycoside phosphotransferase domain containing protein.;Transcript_evidence=AK067109 (DDBJ%2C Best hit);ORF_evidence=NP_565900.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Aminoglycoside phosphotransferase (IPR002575),ABC-1 (IPR004147),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J013094E21;Expression=AK067109;TENOR=Os02t0805800-01;KEGG=Os02t0805800-01
Chr02	irgsp1_rep	five_prime_UTR	34378257	34378347	.	-	.	Parent=Os02t0805800-01
Chr02	irgsp1_rep	CDS	34377848	34378256	.	-	0	Parent=Os02t0805800-01
Chr02	irgsp1_rep	CDS	34377517	34377756	.	-	2	Parent=Os02t0805800-01
Chr02	irgsp1_rep	CDS	34377258	34377424	.	-	2	Parent=Os02t0805800-01
Chr02	irgsp1_rep	CDS	34376986	34377166	.	-	0	Parent=Os02t0805800-01
Chr02	irgsp1_rep	CDS	34376846	34376898	.	-	2	Parent=Os02t0805800-01
Chr02	irgsp1_rep	CDS	34376563	34376706	.	-	0	Parent=Os02t0805800-01
Chr02	irgsp1_rep	CDS	34376307	34376411	.	-	0	Parent=Os02t0805800-01
Chr02	irgsp1_rep	CDS	34375711	34375836	.	-	0	Parent=Os02t0805800-01
Chr02	irgsp1_rep	CDS	34375425	34375622	.	-	0	Parent=Os02t0805800-01
Chr02	irgsp1_rep	CDS	34374948	34375054	.	-	0	Parent=Os02t0805800-01
Chr02	irgsp1_rep	CDS	34374627	34374789	.	-	1	Parent=Os02t0805800-01
Chr02	irgsp1_rep	CDS	34374350	34374415	.	-	0	Parent=Os02t0805800-01
Chr02	irgsp1_rep	CDS	34374163	34374256	.	-	0	Parent=Os02t0805800-01
Chr02	irgsp1_rep	CDS	34373910	34374022	.	-	2	Parent=Os02t0805800-01
Chr02	irgsp1_rep	CDS	34373565	34373635	.	-	0	Parent=Os02t0805800-01
Chr02	irgsp1_rep	CDS	34373222	34373423	.	-	1	Parent=Os02t0805800-01
Chr02	irgsp1_rep	CDS	34372651	34373097	.	-	0	Parent=Os02t0805800-01
Chr02	irgsp1_rep	three_prime_UTR	34372439	34372650	.	-	.	Parent=Os02t0805800-01
Chr02	irgsp1_rep	mRNA	34372417	34373617	.	-	.	ID=Os02t0805800-02;Name=Os02t0805800-02;Locus_id=Os02g0805800;Note=Similar to cDNA clone:J013094E21%2C full insert sequence.;Transcript_evidence=AK105072 (DDBJ%2C Best hit);ORF_evidence=B7ED25 (UniProt);NIAS_FLcDNA=001-045-D11;Expression=AK105072;TENOR=Os02t0805800-02;KEGG=Os02t0805800-02
Chr02	irgsp1_rep	CDS	34373565	34373617	.	-	0	Parent=Os02t0805800-02
Chr02	irgsp1_rep	CDS	34373222	34373423	.	-	1	Parent=Os02t0805800-02
Chr02	irgsp1_rep	CDS	34372651	34373097	.	-	0	Parent=Os02t0805800-02
Chr02	irgsp1_rep	three_prime_UTR	34372417	34372650	.	-	.	Parent=Os02t0805800-02
Chr02	irgsp1_rep	mRNA	34378714	34382107	.	-	.	ID=Os02t0805900-01;Name=Os02t0805900-01;Locus_id=Os02g0805900;Oryzabase Gene Symbol Synonym(s)=OsDCP2%2C DCP2;Note=NUDIX hydrolase%2C core domain containing protein.;Transcript_evidence=AK073740 (DDBJ%2C Best hit);ORF_evidence=NP_001150332.1 (RefSeq);GO=Molecular Function: RNA binding (GO:0003723),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: manganese ion binding (GO:0030145);InterPro=NUDIX hydrolase domain (IPR000086),mRNA decapping protein 2%2C Box A (IPR007722),NUDIX hydrolase domain-like (IPR015797),NUDIX hydrolase%2C conserved site (IPR020084);NIAS_FLcDNA=J033066K03;Oryzabase=19982;Expression=AK073740;TENOR=Os02t0805900-01;KEGG=Os02t0805900-01 (EC:3.-.-.-)
Chr02	irgsp1_rep	five_prime_UTR	34382016	34382107	.	-	.	Parent=Os02t0805900-01
Chr02	irgsp1_rep	CDS	34381930	34382015	.	-	0	Parent=Os02t0805900-01
Chr02	irgsp1_rep	CDS	34381656	34381807	.	-	1	Parent=Os02t0805900-01
Chr02	irgsp1_rep	CDS	34381426	34381553	.	-	2	Parent=Os02t0805900-01
Chr02	irgsp1_rep	CDS	34380979	34381077	.	-	0	Parent=Os02t0805900-01
Chr02	irgsp1_rep	CDS	34380363	34380515	.	-	0	Parent=Os02t0805900-01
Chr02	irgsp1_rep	CDS	34379676	34379779	.	-	0	Parent=Os02t0805900-01
Chr02	irgsp1_rep	CDS	34379442	34379509	.	-	1	Parent=Os02t0805900-01
Chr02	irgsp1_rep	CDS	34378887	34379068	.	-	2	Parent=Os02t0805900-01
Chr02	irgsp1_rep	three_prime_UTR	34378714	34378886	.	-	.	Parent=Os02t0805900-01
Chr02	irgsp1_rep	mRNA	34378712	34379478	.	-	.	ID=Os02t0805900-02;Name=Os02t0805900-02;Locus_id=Os02g0805900;Oryzabase Gene Symbol Synonym(s)=OsDCP2%2C DCP2;Note=Similar to mRNA decapping enzyme 2.;Transcript_evidence=AK063891 (DDBJ%2C Best hit);ORF_evidence=NP_001150332.1 (RefSeq);NIAS_FLcDNA=001-122-G06;Oryzabase=19982;Expression=AK063891;TENOR=Os02t0805900-02;KEGG=Os02t0805900-02 (EC:3.-.-.-)
Chr02	irgsp1_rep	CDS	34379442	34379478	.	-	0	Parent=Os02t0805900-02
Chr02	irgsp1_rep	CDS	34378887	34379068	.	-	2	Parent=Os02t0805900-02
Chr02	irgsp1_rep	three_prime_UTR	34378712	34378886	.	-	.	Parent=Os02t0805900-02
Chr02	irgsp1_rep	mRNA	34382284	34388076	.	+	.	ID=Os02t0806000-01;Name=Os02t0806000-01;Locus_id=Os02g0806000;Note=Acyl-CoA N-acyltransferase domain containing protein.;Transcript_evidence=AK072745 (DDBJ%2C Best hit);ORF_evidence=NP_001151854.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: N-acetyltransferase activity (GO:0008080);InterPro=GCN5-related N-acetyltransferase (GNAT) domain (IPR000182),Acyl-CoA N-acyltransferase (IPR016181);NIAS_FLcDNA=J023135J07;Expression=AK072745;TENOR=Os02t0806000-01;KEGG=Os02t0806000-01
Chr02	irgsp1_rep	five_prime_UTR	34382284	34382312	.	+	.	Parent=Os02t0806000-01
Chr02	irgsp1_rep	CDS	34382313	34382451	.	+	0	Parent=Os02t0806000-01
Chr02	irgsp1_rep	CDS	34382850	34383246	.	+	2	Parent=Os02t0806000-01
Chr02	irgsp1_rep	CDS	34387459	34387738	.	+	1	Parent=Os02t0806000-01
Chr02	irgsp1_rep	three_prime_UTR	34387739	34388076	.	+	.	Parent=Os02t0806000-01
Chr02	irgsp1_rep	mRNA	34383247	34388074	.	+	.	ID=Os02t0806000-02;Name=Os02t0806000-02;Locus_id=Os02g0806000;Note=Similar to N-acetyltransferase.;Transcript_evidence=AK121353 (DDBJ%2C Best hit);ORF_evidence=NP_001151854.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: N-acetyltransferase activity (GO:0008080);InterPro=GCN5-related N-acetyltransferase (GNAT) domain (IPR000182),Acyl-CoA N-acyltransferase (IPR016181);NIAS_FLcDNA=J023122B16;Expression=AK121353;TENOR=Os02t0806000-02;KEGG=Os02t0806000-02
Chr02	irgsp1_rep	five_prime_UTR	34383247	34387429	.	+	.	Parent=Os02t0806000-02
Chr02	irgsp1_rep	CDS	34387430	34387738	.	+	0	Parent=Os02t0806000-02
Chr02	irgsp1_rep	three_prime_UTR	34387739	34388074	.	+	.	Parent=Os02t0806000-02
Chr02	irgsp1_rep	mRNA	34408093	34409549	.	+	.	ID=Os02t0806300-01;Name=Os02t0806300-01;Locus_id=Os02g0806300;Oryzabase Gene Symbol Synonym(s)=OsGATA3%2C GATA3;Oryzabase Gene Name Synonym(s)=GATA transcription factor 3%2C GATA factor 3;Note=Hypothetical protein.;Transcript_evidence=AK099828 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013104B13;Oryzabase=22165;TENOR=Os02t0806300-01;KEGG=Os02t0806300-01
Chr02	irgsp1_rep	five_prime_UTR	34408093	34408965	.	+	.	Parent=Os02t0806300-01
Chr02	irgsp1_rep	CDS	34408966	34409232	.	+	0	Parent=Os02t0806300-01
Chr02	irgsp1_rep	three_prime_UTR	34409233	34409549	.	+	.	Parent=Os02t0806300-01
Chr02	irgsp1_rep	mRNA	34408466	34413247	.	-	.	ID=Os02t0806350-00;Name=Os02t0806350-00;Locus_id=Os02g0806350;Note=Hypothetical protein.;Transcript_evidence=tplb0025n12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0806350-00
Chr02	irgsp1_rep	five_prime_UTR	34412697	34413247	.	-	.	Parent=Os02t0806350-00
Chr02	irgsp1_rep	five_prime_UTR	34412376	34412603	.	-	.	Parent=Os02t0806350-00
Chr02	irgsp1_rep	CDS	34411528	34412375	.	-	0	Parent=Os02t0806350-00
Chr02	irgsp1_rep	CDS	34410535	34410842	.	-	1	Parent=Os02t0806350-00
Chr02	irgsp1_rep	CDS	34408745	34408947	.	-	2	Parent=Os02t0806350-00
Chr02	irgsp1_rep	three_prime_UTR	34408466	34408744	.	-	.	Parent=Os02t0806350-00
Chr02	irgsp1_rep	mRNA	34410557	34413403	.	+	.	ID=Os02t0806400-01;Name=Os02t0806400-01;Locus_id=Os02g0806400;Note=Similar to Gata zn finger family protein.;Transcript_evidence=AK106379 (DDBJ%2C Best hit);ORF_evidence=A6N099 (UniProt);NIAS_FLcDNA=002-102-D09;Expression=AK106379;TENOR=Os02t0806400-01;KEGG=Os02t0806400-01
Chr02	irgsp1_rep	five_prime_UTR	34410557	34410908	.	+	.	Parent=Os02t0806400-01
Chr02	irgsp1_rep	five_prime_UTR	34411560	34411809	.	+	.	Parent=Os02t0806400-01
Chr02	irgsp1_rep	five_prime_UTR	34412594	34412621	.	+	.	Parent=Os02t0806400-01
Chr02	irgsp1_rep	CDS	34412622	34412783	.	+	0	Parent=Os02t0806400-01
Chr02	irgsp1_rep	three_prime_UTR	34412784	34413403	.	+	.	Parent=Os02t0806400-01
Chr02	irgsp1_rep	mRNA	34410562	34412084	.	+	.	ID=Os02t0806400-02;Name=Os02t0806400-02;Locus_id=Os02g0806400;Note=Hypothetical conserved gene.;Transcript_evidence=AK107867 (DDBJ%2C Best hit);ORF_evidence=Q948G4 (UniProt);NIAS_FLcDNA=002-134-C03;Expression=AK107867;TENOR=Os02t0806400-02;KEGG=Os02t0806400-02
Chr02	irgsp1_rep	five_prime_UTR	34410562	34410566	.	+	.	Parent=Os02t0806400-02
Chr02	irgsp1_rep	CDS	34410567	34410908	.	+	0	Parent=Os02t0806400-02
Chr02	irgsp1_rep	CDS	34411560	34412084	.	+	0	Parent=Os02t0806400-02
Chr02	irgsp1_rep	mRNA	34422154	34425403	.	-	.	ID=Os02t0806500-00;Name=Os02t0806500-00;Locus_id=Os02g0806500;Note=Similar to Glycosyl transferase family 2 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B5RHS8 (UniProt);TENOR=Os02t0806500-00;KEGG=Os02t0806500-00
Chr02	irgsp1_rep	CDS	34423645	34425403	.	-	0	Parent=Os02t0806500-00
Chr02	irgsp1_rep	CDS	34422154	34423181	.	-	2	Parent=Os02t0806500-00
Chr02	irgsp1_rep	mRNA	34428663	34434161	.	-	.	ID=Os02t0806600-01;Name=Os02t0806600-01;Locus_id=Os02g0806600;Note=ENTH/VHS domain containing protein.;Transcript_evidence=AK067491 (DDBJ%2C Best hit);ORF_evidence=Q948G6 (UniProt);InterPro=Epsin domain%2C N-terminal (IPR001026),ENTH/VHS (IPR008942),Epsin-like%2C N-terminal (IPR013809);NIAS_FLcDNA=J013110A10;Expression=AK067491;TENOR=Os02t0806600-01;KEGG=Os02t0806600-01
Chr02	irgsp1_rep	five_prime_UTR	34433955	34434161	.	-	.	Parent=Os02t0806600-01
Chr02	irgsp1_rep	five_prime_UTR	34433534	34433603	.	-	.	Parent=Os02t0806600-01
Chr02	irgsp1_rep	CDS	34433499	34433533	.	-	0	Parent=Os02t0806600-01
Chr02	irgsp1_rep	CDS	34433331	34433382	.	-	1	Parent=Os02t0806600-01
Chr02	irgsp1_rep	CDS	34433103	34433182	.	-	0	Parent=Os02t0806600-01
Chr02	irgsp1_rep	CDS	34432931	34433009	.	-	1	Parent=Os02t0806600-01
Chr02	irgsp1_rep	CDS	34432720	34432803	.	-	0	Parent=Os02t0806600-01
Chr02	irgsp1_rep	CDS	34432463	34432608	.	-	0	Parent=Os02t0806600-01
Chr02	irgsp1_rep	CDS	34432023	34432367	.	-	1	Parent=Os02t0806600-01
Chr02	irgsp1_rep	CDS	34431823	34431864	.	-	1	Parent=Os02t0806600-01
Chr02	irgsp1_rep	CDS	34431637	34431735	.	-	1	Parent=Os02t0806600-01
Chr02	irgsp1_rep	CDS	34431374	34431558	.	-	1	Parent=Os02t0806600-01
Chr02	irgsp1_rep	CDS	34430965	34431164	.	-	2	Parent=Os02t0806600-01
Chr02	irgsp1_rep	CDS	34429633	34430599	.	-	0	Parent=Os02t0806600-01
Chr02	irgsp1_rep	CDS	34429026	34429549	.	-	2	Parent=Os02t0806600-01
Chr02	irgsp1_rep	three_prime_UTR	34428663	34429025	.	-	.	Parent=Os02t0806600-01
Chr02	irgsp1_rep	mRNA	34428750	34431633	.	-	.	ID=Os02t0806600-02;Name=Os02t0806600-02;Locus_id=Os02g0806600;Note=Conserved hypothetical protein.;Transcript_evidence=AK120991 (DDBJ%2C Best hit);ORF_evidence=Q948G6 (UniProt);NIAS_FLcDNA=J023043J06;TENOR=Os02t0806600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	34431597	34431633	.	-	.	Parent=Os02t0806600-02
Chr02	irgsp1_rep	CDS	34431374	34431596	.	-	0	Parent=Os02t0806600-02
Chr02	irgsp1_rep	CDS	34430965	34431164	.	-	2	Parent=Os02t0806600-02
Chr02	irgsp1_rep	CDS	34429633	34430599	.	-	0	Parent=Os02t0806600-02
Chr02	irgsp1_rep	CDS	34429026	34429549	.	-	2	Parent=Os02t0806600-02
Chr02	irgsp1_rep	three_prime_UTR	34428750	34429025	.	-	.	Parent=Os02t0806600-02
Chr02	irgsp1_rep	mRNA	34428644	34434091	.	-	.	ID=Os02t0806600-03;Name=Os02t0806600-03;Locus_id=Os02g0806600;Note=ENTH/VHS domain containing protein.;Transcript_evidence=AK121225 (DDBJ%2C Best hit);ORF_evidence=Q948G6 (UniProt);InterPro=Epsin domain%2C N-terminal (IPR001026),ENTH/VHS (IPR008942),Epsin-like%2C N-terminal (IPR013809);NIAS_FLcDNA=J023091E08;TENOR=Os02t0806600-03
Chr02	irgsp1_rep	five_prime_UTR	34433955	34434091	.	-	.	Parent=Os02t0806600-03
Chr02	irgsp1_rep	five_prime_UTR	34433534	34433603	.	-	.	Parent=Os02t0806600-03
Chr02	irgsp1_rep	CDS	34433499	34433533	.	-	0	Parent=Os02t0806600-03
Chr02	irgsp1_rep	CDS	34433331	34433382	.	-	1	Parent=Os02t0806600-03
Chr02	irgsp1_rep	CDS	34433103	34433182	.	-	0	Parent=Os02t0806600-03
Chr02	irgsp1_rep	CDS	34432931	34433009	.	-	1	Parent=Os02t0806600-03
Chr02	irgsp1_rep	CDS	34432720	34432803	.	-	0	Parent=Os02t0806600-03
Chr02	irgsp1_rep	CDS	34432463	34432608	.	-	0	Parent=Os02t0806600-03
Chr02	irgsp1_rep	CDS	34432023	34432367	.	-	1	Parent=Os02t0806600-03
Chr02	irgsp1_rep	CDS	34431823	34431864	.	-	1	Parent=Os02t0806600-03
Chr02	irgsp1_rep	CDS	34431637	34431735	.	-	1	Parent=Os02t0806600-03
Chr02	irgsp1_rep	CDS	34431374	34431558	.	-	1	Parent=Os02t0806600-03
Chr02	irgsp1_rep	CDS	34430965	34431164	.	-	2	Parent=Os02t0806600-03
Chr02	irgsp1_rep	CDS	34429633	34430599	.	-	0	Parent=Os02t0806600-03
Chr02	irgsp1_rep	CDS	34429026	34429549	.	-	2	Parent=Os02t0806600-03
Chr02	irgsp1_rep	three_prime_UTR	34428644	34429025	.	-	.	Parent=Os02t0806600-03
Chr02	irgsp1_rep	mRNA	34439819	34444555	.	-	.	ID=Os02t0806700-01;Name=Os02t0806700-01;Locus_id=Os02g0806700;Note=Similar to Retroelement pol polyprotein-like.;Transcript_evidence=AK072167 (DDBJ%2C Best hit);ORF_evidence=NP_001148048.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),von Willebrand factor%2C type A (IPR002035),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J013130C12;Expression=AK072167;TENOR=Os02t0806700-01;KEGG=Os02t0806700-01
Chr02	irgsp1_rep	five_prime_UTR	34444082	34444555	.	-	.	Parent=Os02t0806700-01
Chr02	irgsp1_rep	CDS	34443806	34444081	.	-	0	Parent=Os02t0806700-01
Chr02	irgsp1_rep	CDS	34440239	34442134	.	-	0	Parent=Os02t0806700-01
Chr02	irgsp1_rep	three_prime_UTR	34439819	34440238	.	-	.	Parent=Os02t0806700-01
Chr02	irgsp1_rep	mRNA	34463040	34467006	.	+	.	ID=Os02t0806900-01;Name=Os02t0806900-01;Locus_id=Os02g0806900;Note=Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 domain containing protein.;Transcript_evidence=AK105851 (DDBJ%2C Best hit),AK073935 (DDBJ%2C Best hit);ORF_evidence=NP_001147940.1 (RefSeq);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferase%2C class I/classII (IPR004839),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=001-203-G09,J033075P19;Expression=AK105851;TENOR=Os02t0806900-01;KEGG=Os02t0806900-01 (EC:2.3.1.50)
Chr02	irgsp1_rep	five_prime_UTR	34463040	34463269	.	+	.	Parent=Os02t0806900-01
Chr02	irgsp1_rep	five_prime_UTR	34463415	34463471	.	+	.	Parent=Os02t0806900-01
Chr02	irgsp1_rep	CDS	34463472	34463583	.	+	0	Parent=Os02t0806900-01
Chr02	irgsp1_rep	CDS	34463681	34463775	.	+	2	Parent=Os02t0806900-01
Chr02	irgsp1_rep	CDS	34463887	34463978	.	+	0	Parent=Os02t0806900-01
Chr02	irgsp1_rep	CDS	34464385	34464478	.	+	1	Parent=Os02t0806900-01
Chr02	irgsp1_rep	CDS	34464553	34464625	.	+	0	Parent=Os02t0806900-01
Chr02	irgsp1_rep	CDS	34464729	34464861	.	+	2	Parent=Os02t0806900-01
Chr02	irgsp1_rep	CDS	34465262	34465436	.	+	1	Parent=Os02t0806900-01
Chr02	irgsp1_rep	CDS	34465524	34465664	.	+	0	Parent=Os02t0806900-01
Chr02	irgsp1_rep	CDS	34465864	34465959	.	+	0	Parent=Os02t0806900-01
Chr02	irgsp1_rep	CDS	34466056	34466197	.	+	0	Parent=Os02t0806900-01
Chr02	irgsp1_rep	CDS	34466460	34466587	.	+	2	Parent=Os02t0806900-01
Chr02	irgsp1_rep	CDS	34466686	34466850	.	+	0	Parent=Os02t0806900-01
Chr02	irgsp1_rep	three_prime_UTR	34466851	34467006	.	+	.	Parent=Os02t0806900-01
Chr02	irgsp1_rep	mRNA	34468754	34470169	.	-	.	ID=Os02t0807000-01;Name=Os02t0807000-01;Locus_id=Os02g0807000;CGSNL Gene Symbol=PPCK1;CGSNL Gene Name=PHOSPHOENOL PYRUVATE CARBOXYLASE KINASE1;Oryzabase Gene Symbol Synonym(s)=OsPPCK1;Oryzabase Gene Name Synonym(s)=phosphoenol pyruvate carboxylase kinase1%2C phosphoenolpyruvate carboxylase kinase 1;Note=Similar to Phosphoenolpyruvate carboxylase kinase 1.;Transcript_evidence=AK101080 (DDBJ%2C Best hit);ORF_evidence=Q2EF47 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033024D05;Oryzabase=6267;Expression=AK101080;TENOR=Os02t0807000-01;KEGG=Os02t0807000-01 (EC:2.7.11.17)
Chr02	irgsp1_rep	five_prime_UTR	34470126	34470169	.	-	.	Parent=Os02t0807000-01
Chr02	irgsp1_rep	CDS	34469303	34470125	.	-	0	Parent=Os02t0807000-01
Chr02	irgsp1_rep	CDS	34469134	34469180	.	-	2	Parent=Os02t0807000-01
Chr02	irgsp1_rep	three_prime_UTR	34468754	34469133	.	-	.	Parent=Os02t0807000-01
Chr02	irgsp1_rep	mRNA	34475749	34483848	.	+	.	ID=Os02t0807100-01;Name=Os02t0807100-01;Locus_id=Os02g0807100;Note=Similar to Starch synthase V.;Transcript_evidence=AK119364 (DDBJ%2C Best hit);ORF_evidence=B2MUU3 (UniProt);InterPro=Starch synthase%2C catalytic domain (IPR013534);NIAS_FLcDNA=001-131-G12;TENOR=Os02t0807100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	34475749	34475929	.	+	.	Parent=Os02t0807100-01
Chr02	irgsp1_rep	CDS	34475930	34476093	.	+	0	Parent=Os02t0807100-01
Chr02	irgsp1_rep	CDS	34476232	34476288	.	+	1	Parent=Os02t0807100-01
Chr02	irgsp1_rep	CDS	34476388	34476415	.	+	1	Parent=Os02t0807100-01
Chr02	irgsp1_rep	CDS	34476526	34476595	.	+	0	Parent=Os02t0807100-01
Chr02	irgsp1_rep	CDS	34476777	34476890	.	+	2	Parent=Os02t0807100-01
Chr02	irgsp1_rep	CDS	34477095	34477317	.	+	2	Parent=Os02t0807100-01
Chr02	irgsp1_rep	CDS	34477619	34477753	.	+	1	Parent=Os02t0807100-01
Chr02	irgsp1_rep	CDS	34478082	34478186	.	+	1	Parent=Os02t0807100-01
Chr02	irgsp1_rep	CDS	34478338	34478374	.	+	1	Parent=Os02t0807100-01
Chr02	irgsp1_rep	three_prime_UTR	34478375	34478508	.	+	.	Parent=Os02t0807100-01
Chr02	irgsp1_rep	three_prime_UTR	34478894	34479023	.	+	.	Parent=Os02t0807100-01
Chr02	irgsp1_rep	three_prime_UTR	34479440	34479490	.	+	.	Parent=Os02t0807100-01
Chr02	irgsp1_rep	three_prime_UTR	34480045	34480155	.	+	.	Parent=Os02t0807100-01
Chr02	irgsp1_rep	three_prime_UTR	34480774	34480883	.	+	.	Parent=Os02t0807100-01
Chr02	irgsp1_rep	three_prime_UTR	34480997	34481162	.	+	.	Parent=Os02t0807100-01
Chr02	irgsp1_rep	three_prime_UTR	34481247	34481327	.	+	.	Parent=Os02t0807100-01
Chr02	irgsp1_rep	three_prime_UTR	34481414	34481482	.	+	.	Parent=Os02t0807100-01
Chr02	irgsp1_rep	three_prime_UTR	34481606	34481719	.	+	.	Parent=Os02t0807100-01
Chr02	irgsp1_rep	three_prime_UTR	34482206	34482267	.	+	.	Parent=Os02t0807100-01
Chr02	irgsp1_rep	three_prime_UTR	34482401	34482497	.	+	.	Parent=Os02t0807100-01
Chr02	irgsp1_rep	three_prime_UTR	34482659	34482859	.	+	.	Parent=Os02t0807100-01
Chr02	irgsp1_rep	three_prime_UTR	34483122	34483222	.	+	.	Parent=Os02t0807100-01
Chr02	irgsp1_rep	three_prime_UTR	34483311	34483848	.	+	.	Parent=Os02t0807100-01
Chr02	irgsp1_rep	mRNA	34482713	34484603	.	+	.	ID=Os02t0807100-02;Name=Os02t0807100-02;Locus_id=Os02g0807100;Note=Hypothetical gene.;Transcript_evidence=AK105477 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-127-A08;Expression=AK105477;TENOR=Os02t0807100-02;KEGG=Os02t0807100-02
Chr02	irgsp1_rep	five_prime_UTR	34482713	34482859	.	+	.	Parent=Os02t0807100-02
Chr02	irgsp1_rep	five_prime_UTR	34483122	34483360	.	+	.	Parent=Os02t0807100-02
Chr02	irgsp1_rep	CDS	34483361	34483648	.	+	0	Parent=Os02t0807100-02
Chr02	irgsp1_rep	three_prime_UTR	34483649	34484603	.	+	.	Parent=Os02t0807100-02
Chr02	irgsp1_rep	mRNA	34483996	34486095	.	+	.	ID=Os02t0807100-03;Name=Os02t0807100-03;Locus_id=Os02g0807100;Note=Hypothetical gene.;Transcript_evidence=AK103831 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033148A20;Expression=AK103831;TENOR=Os02t0807100-03;KEGG=Os02t0807100-03
Chr02	irgsp1_rep	five_prime_UTR	34483996	34485101	.	+	.	Parent=Os02t0807100-03
Chr02	irgsp1_rep	CDS	34485102	34485728	.	+	0	Parent=Os02t0807100-03
Chr02	irgsp1_rep	three_prime_UTR	34485729	34486095	.	+	.	Parent=Os02t0807100-03
Chr02	irgsp1_rep	mRNA	34483285	34485923	.	-	.	ID=Os02t0807200-00;Name=Os02t0807200-00;Locus_id=Os02g0807200;CGSNL Gene Symbol=WAK18;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 18;Oryzabase Gene Symbol Synonym(s)=OsWAK18;Note=Similar to Protein kinase family protein.;Transcript_evidence=DQ177499 (DDBJ);ORF_evidence=B5RHV5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=EGF-type aspartate/asparagine hydroxylation site (IPR000152),Protein kinase%2C catalytic domain (IPR000719),Epidermal growth factor-like%2C type 3 (IPR000742),Serine-threonine/tyrosine-protein kinase (IPR001245),EGF-like calcium-binding (IPR001881),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),EGF-like calcium-binding%2C conserved site (IPR018097),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=6916;TENOR=Os02t0807200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	34484813	34485923	.	-	0	Parent=Os02t0807200-00
Chr02	irgsp1_rep	CDS	34483285	34484726	.	-	2	Parent=Os02t0807200-00
Chr02	irgsp1_rep	mRNA	34488380	34489365	.	+	.	ID=Os02t0807300-01;Name=Os02t0807300-01;Locus_id=Os02g0807300;Note=Hypothetical protein.;Transcript_evidence=AK071841 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J023120H11;TENOR=Os02t0807300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	34488380	34488557	.	+	.	Parent=Os02t0807300-01
Chr02	irgsp1_rep	CDS	34488558	34488944	.	+	0	Parent=Os02t0807300-01
Chr02	irgsp1_rep	three_prime_UTR	34488945	34488998	.	+	.	Parent=Os02t0807300-01
Chr02	irgsp1_rep	three_prime_UTR	34489106	34489365	.	+	.	Parent=Os02t0807300-01
Chr02	irgsp1_rep	mRNA	34493339	34493888	.	+	.	ID=Os02t0807600-01;Name=Os02t0807600-01;Locus_id=Os02g0807600;Note=Hypothetical gene.;Transcript_evidence=AK062825 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=001-107-F07;Expression=AK062825;TENOR=Os02t0807600-01;KEGG=Os02t0807600-01
Chr02	irgsp1_rep	five_prime_UTR	34493339	34493340	.	+	.	Parent=Os02t0807600-01
Chr02	irgsp1_rep	CDS	34493341	34493712	.	+	0	Parent=Os02t0807600-01
Chr02	irgsp1_rep	three_prime_UTR	34493713	34493888	.	+	.	Parent=Os02t0807600-01
Chr02	irgsp1_rep	mRNA	34502218	34504563	.	+	.	ID=Os02t0807700-01;Name=Os02t0807700-01;Locus_id=Os02g0807700;Note=Zinc finger%2C LSD1-type domain containing protein.;Transcript_evidence=AK099623 (DDBJ%2C Best hit);ORF_evidence=Q69UP7 (UniProt);InterPro=Zinc finger%2C LSD1-type (IPR005735);NIAS_FLcDNA=J013053G12;Expression=AK099623;TENOR=Os02t0807700-01;KEGG=Os02t0807700-01
Chr02	irgsp1_rep	five_prime_UTR	34502218	34503281	.	+	.	Parent=Os02t0807700-01
Chr02	irgsp1_rep	CDS	34503282	34503366	.	+	0	Parent=Os02t0807700-01
Chr02	irgsp1_rep	CDS	34503754	34503867	.	+	2	Parent=Os02t0807700-01
Chr02	irgsp1_rep	CDS	34504039	34504046	.	+	2	Parent=Os02t0807700-01
Chr02	irgsp1_rep	three_prime_UTR	34504047	34504148	.	+	.	Parent=Os02t0807700-01
Chr02	irgsp1_rep	three_prime_UTR	34504223	34504563	.	+	.	Parent=Os02t0807700-01
Chr02	irgsp1_rep	mRNA	34505599	34506482	.	+	.	ID=Os02t0807750-01;Name=Os02t0807750-01;Locus_id=Os02g0807750;Note=Conserved hypothetical protein.;Transcript_evidence=AK242078 (DDBJ%2C Best hit);ORF_evidence=B9F450 (UniProt);NIAS_FLcDNA=J075136J04;TENOR=Os02t0807750-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	34505599	34506139	.	+	.	Parent=Os02t0807750-01
Chr02	irgsp1_rep	CDS	34506140	34506400	.	+	0	Parent=Os02t0807750-01
Chr02	irgsp1_rep	three_prime_UTR	34506401	34506482	.	+	.	Parent=Os02t0807750-01
Chr02	irgsp1_rep	mRNA	34509523	34512673	.	-	.	ID=Os02t0807800-01;Name=Os02t0807800-01;Locus_id=Os02g0807800;CGSNL Gene Symbol=WAK20;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 20;Oryzabase Gene Symbol Synonym(s)=OsWAK20;Note=Hypothetical conserved gene.;Transcript_evidence=AK241820 (DDBJ%2C Best hit);ORF_evidence=A3ACH7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=EGF-type aspartate/asparagine hydroxylation site (IPR000152),Protein kinase%2C catalytic domain (IPR000719),EGF-like calcium-binding (IPR001881),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EGF-like calcium-binding%2C conserved site (IPR018097);NIAS_FLcDNA=J065212B02;Oryzabase=6921;TENOR=Os02t0807800-01;KEGG=Os02t0807800-01
Chr02	irgsp1_rep	five_prime_UTR	34512643	34512673	.	-	.	Parent=Os02t0807800-01
Chr02	irgsp1_rep	CDS	34511721	34512642	.	-	0	Parent=Os02t0807800-01
Chr02	irgsp1_rep	CDS	34511489	34511629	.	-	2	Parent=Os02t0807800-01
Chr02	irgsp1_rep	CDS	34509711	34510918	.	-	2	Parent=Os02t0807800-01
Chr02	irgsp1_rep	three_prime_UTR	34509523	34509710	.	-	.	Parent=Os02t0807800-01
Chr02	irgsp1_rep	mRNA	34516622	34519474	.	-	.	ID=Os02t0807900-01;Name=Os02t0807900-01;Locus_id=Os02g0807900;CGSNL Gene Symbol=WAK21;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 21;Oryzabase Gene Symbol Synonym(s)=OsWAK21;Note=Conserved hypothetical protein.;Transcript_evidence=AK119341 (DDBJ%2C Best hit);ORF_evidence=B9F451 (UniProt);NIAS_FLcDNA=001-131-D09;Oryzabase=6922;TENOR=Os02t0807900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	34519464	34519474	.	-	.	Parent=Os02t0807900-01
Chr02	irgsp1_rep	CDS	34518486	34519463	.	-	0	Parent=Os02t0807900-01
Chr02	irgsp1_rep	three_prime_UTR	34516622	34518485	.	-	.	Parent=Os02t0807900-01
Chr02	irgsp1_rep	mRNA	34517133	34519413	.	+	.	ID=Os02t0808000-00;Name=Os02t0808000-00;Locus_id=Os02g0808000;Note=Hypothetical protein.;Transcript_evidence=EU955465 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0808000-00
Chr02	irgsp1_rep	five_prime_UTR	34517133	34517866	.	+	.	Parent=Os02t0808000-00
Chr02	irgsp1_rep	five_prime_UTR	34518196	34518308	.	+	.	Parent=Os02t0808000-00
Chr02	irgsp1_rep	CDS	34518309	34518336	.	+	0	Parent=Os02t0808000-00
Chr02	irgsp1_rep	CDS	34518490	34519403	.	+	2	Parent=Os02t0808000-00
Chr02	irgsp1_rep	three_prime_UTR	34519404	34519413	.	+	.	Parent=Os02t0808000-00
Chr02	irgsp1_rep	mRNA	34531556	34533534	.	-	.	ID=Os02t0808100-00;Name=Os02t0808100-00;Locus_id=Os02g0808100;Note=Similar to Protein kinase family protein.;Transcript_evidence=EU957721 (DDBJ);ORF_evidence=B5RHV5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os02t0808100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	34533330	34533534	.	-	.	Parent=Os02t0808100-00
Chr02	irgsp1_rep	five_prime_UTR	34533003	34533004	.	-	.	Parent=Os02t0808100-00
Chr02	irgsp1_rep	CDS	34532861	34533002	.	-	0	Parent=Os02t0808100-00
Chr02	irgsp1_rep	CDS	34531556	34532748	.	-	2	Parent=Os02t0808100-00
Chr02	irgsp1_rep	mRNA	34545277	34553608	.	+	.	ID=Os02t0808300-01;Name=Os02t0808300-01;Locus_id=Os02g0808300;CGSNL Gene Symbol=WAK23;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 23;Oryzabase Gene Symbol Synonym(s)=OsWAK23;Note=EGF domain containing protein.;Transcript_evidence=AK108554 (DDBJ%2C Best hit);ORF_evidence=A3ACI0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Epidermal growth factor-like (IPR006210);NIAS_FLcDNA=002-144-E09;Oryzabase=6924;Expression=AK108554;TENOR=Os02t0808300-01;KEGG=Os02t0808300-01
Chr02	irgsp1_rep	CDS	34545277	34546222	.	+	0	Parent=Os02t0808300-01
Chr02	irgsp1_rep	CDS	34553191	34553279	.	+	2	Parent=Os02t0808300-01
Chr02	irgsp1_rep	three_prime_UTR	34553280	34553608	.	+	.	Parent=Os02t0808300-01
Chr02	irgsp1_rep	mRNA	34545339	34549729	.	-	.	ID=Os02t0808350-00;Name=Os02t0808350-00;Locus_id=Os02g0808350;Note=Hypothetical protein.;Transcript_evidence=EU955465 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0808350-00
Chr02	irgsp1_rep	five_prime_UTR	34548941	34549729	.	-	.	Parent=Os02t0808350-00
Chr02	irgsp1_rep	five_prime_UTR	34548818	34548831	.	-	.	Parent=Os02t0808350-00
Chr02	irgsp1_rep	CDS	34548738	34548817	.	-	0	Parent=Os02t0808350-00
Chr02	irgsp1_rep	CDS	34545928	34546222	.	-	1	Parent=Os02t0808350-00
Chr02	irgsp1_rep	three_prime_UTR	34545339	34545927	.	-	.	Parent=Os02t0808350-00
Chr02	irgsp1_rep	mRNA	34557782	34558006	.	+	.	ID=Os02t0808475-00;Name=Os02t0808475-00;Locus_id=Os02g0808475;Note=Non-protein coding transcript.;Transcript_evidence=EU949494 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0808475-00
Chr02	irgsp1_rep	exon	34557782	34558006	.	+	.	Parent=Os02t0808475-00
Chr02	irgsp1_rep	mRNA	34559305	34560177	.	-	.	ID=Os02t0808500-01;Name=Os02t0808500-01;Locus_id=Os02g0808500;Note=Hypothetical protein.;Transcript_evidence=AK109650 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-140-A11;Expression=AK109650;TENOR=Os02t0808500-01;KEGG=Os02t0808500-01
Chr02	irgsp1_rep	five_prime_UTR	34559944	34560177	.	-	.	Parent=Os02t0808500-01
Chr02	irgsp1_rep	CDS	34559596	34559943	.	-	0	Parent=Os02t0808500-01
Chr02	irgsp1_rep	three_prime_UTR	34559305	34559595	.	-	.	Parent=Os02t0808500-01
Chr02	irgsp1_rep	mRNA	34561725	34561986	.	+	.	ID=Os02t0808601-00;Name=Os02t0808601-00;Locus_id=Os02g0808601;Note=Similar to predicted protein.;Transcript_evidence=EU940750 (DDBJ);ORF_evidence=XP_002327722.1 (RefSeq);TENOR=Os02t0808601-00;KEGG=Os02t0808601-00
Chr02	irgsp1_rep	five_prime_UTR	34561725	34561782	.	+	.	Parent=Os02t0808601-00
Chr02	irgsp1_rep	CDS	34561783	34561986	.	+	0	Parent=Os02t0808601-00
Chr02	irgsp1_rep	mRNA	34564290	34566122	.	-	.	ID=Os02t0808800-01;Name=Os02t0808800-01;Locus_id=Os02g0808800;CGSNL Gene Symbol=CCR1;CGSNL Gene Name=CINNAMOYL-COA REDUCTASE 1;Oryzabase Gene Symbol Synonym(s)=OsCCR1;Oryzabase Gene Name Synonym(s)=OsCINNAMOYL-COENZYME A REDUCTASE1%2C CINNAMOYL-COENZYME A REDUCTASE 1%2C CINNAMOYL-CoA REDUCTASE 1;Note=Similar to Cinnamoyl-CoA reductase (EC 1.2.1.44).;Transcript_evidence=AK064401 (DDBJ%2C Best hit);ORF_evidence=Q8VXA7 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=002-108-H04;Oryzabase=7100;Expression=AK064401;TENOR=Os02t0808800-01;KEGG=Os02t0808800-01 (EC:1.2.1.44)
Chr02	irgsp1_rep	five_prime_UTR	34566001	34566122	.	-	.	Parent=Os02t0808800-01
Chr02	irgsp1_rep	CDS	34565853	34566000	.	-	0	Parent=Os02t0808800-01
Chr02	irgsp1_rep	CDS	34565603	34565757	.	-	2	Parent=Os02t0808800-01
Chr02	irgsp1_rep	CDS	34565327	34565509	.	-	0	Parent=Os02t0808800-01
Chr02	irgsp1_rep	CDS	34564870	34565222	.	-	0	Parent=Os02t0808800-01
Chr02	irgsp1_rep	CDS	34564579	34564756	.	-	1	Parent=Os02t0808800-01
Chr02	irgsp1_rep	three_prime_UTR	34564290	34564578	.	-	.	Parent=Os02t0808800-01
Chr02	irgsp1_rep	mRNA	34574608	34576261	.	-	.	ID=Os02t0809100-00;Name=Os02t0809100-00;Locus_id=Os02g0809100;Note=Conserved hypothetical protein.;Transcript_evidence=EU969914 (DDBJ);ORF_evidence=NP_001048461.2 (RefSeq);TENOR=Os02t0809100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	34575514	34576261	.	-	0	Parent=Os02t0809100-00
Chr02	irgsp1_rep	CDS	34574608	34575455	.	-	2	Parent=Os02t0809100-00
Chr02	irgsp1_rep	mRNA	34584239	34585223	.	-	.	ID=Os02t0809300-01;Name=Os02t0809300-01;Locus_id=Os02g0809300;Oryzabase Gene Symbol Synonym(s)=OsCLE205%2C CLE205;Oryzabase Gene Name Synonym(s)=CLV3/ESR-related 205%2C CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 205;Note=Conserved hypothetical protein.;Transcript_evidence=AK103377 (DDBJ%2C Best hit);ORF_evidence=NP_001146777.1 (RefSeq);NIAS_FLcDNA=J033127D10;Oryzabase=14226;Expression=AK103377;TENOR=Os02t0809300-01;KEGG=Os02t0809300-01
Chr02	irgsp1_rep	five_prime_UTR	34584798	34585223	.	-	.	Parent=Os02t0809300-01
Chr02	irgsp1_rep	CDS	34584483	34584797	.	-	0	Parent=Os02t0809300-01
Chr02	irgsp1_rep	three_prime_UTR	34584239	34584482	.	-	.	Parent=Os02t0809300-01
Chr02	irgsp1_rep	mRNA	34596638	34599987	.	+	.	ID=Os02t0809500-01;Name=Os02t0809500-01;Locus_id=Os02g0809500;RAP-DB Gene Symbol Synonym(s)=OsSEC24;Oryzabase Gene Symbol Synonym(s)=OsSEC24%2C OsSEC27%2C SEC24%2C SEC27;Note=Functional SEC24-like protein%2C Coat protein%2C Tolerance to iron deficiency and high pH by enhancing H<sup>+</sup>secretion;Transcript_evidence=AK100684;ORF_evidence=Q6K992;NIAS_FLcDNA=J023113M12;Manual Curation=May 22%2C 2020;Literature_PMID=25711814;Oryzabase=19295;Expression=AK100684;TENOR=Os02t0809500-01;KEGG=Os02t0809500-01
Chr02	irgsp1_rep	five_prime_UTR	34596638	34596719	.	+	.	Parent=Os02t0809500-01
Chr02	irgsp1_rep	five_prime_UTR	34596940	34597002	.	+	.	Parent=Os02t0809500-01
Chr02	irgsp1_rep	CDS	34597003	34597240	.	+	0	Parent=Os02t0809500-01
Chr02	irgsp1_rep	CDS	34597373	34597749	.	+	2	Parent=Os02t0809500-01
Chr02	irgsp1_rep	CDS	34597840	34598089	.	+	0	Parent=Os02t0809500-01
Chr02	irgsp1_rep	CDS	34598213	34598378	.	+	2	Parent=Os02t0809500-01
Chr02	irgsp1_rep	CDS	34598762	34598864	.	+	1	Parent=Os02t0809500-01
Chr02	irgsp1_rep	CDS	34598960	34599085	.	+	0	Parent=Os02t0809500-01
Chr02	irgsp1_rep	CDS	34599225	34599438	.	+	0	Parent=Os02t0809500-01
Chr02	irgsp1_rep	CDS	34599535	34599815	.	+	2	Parent=Os02t0809500-01
Chr02	irgsp1_rep	three_prime_UTR	34599816	34599987	.	+	.	Parent=Os02t0809500-01
Chr02	irgsp1_rep	mRNA	34609403	34611324	.	-	.	ID=Os02t0809700-01;Name=Os02t0809700-01;Locus_id=Os02g0809700;RAP-DB Gene Symbol Synonym(s)=PHO1%3B2 CIS-NAT%2C OsPHO1%3B2 cis-NAT%2C cis-NAT PHO1%3B2;RAP-DB Gene Name Synonym(s)=PHOSPHATE TRANSPORTER 1%3B2 CIS-NATURAL ANTISENSE TRANSCRIPT;CGSNL Gene Symbol=PHO1%3B2 CIS-NAT;CGSNL Gene Name=PHOSPHATE TRANSPORTER 1%3B2 CIS-NATURAL ANTISENSE TRANSCRIPT;Oryzabase Gene Symbol Synonym(s)=OsPHO1%3B2 cis-NAT%2C cis-NAT PHO1%3B2;Note=Pi homeostasis;Transcript_evidence=AK071338 (Genbank);ORF_evidence=Q0DWK9 (UniProt);NIAS_FLcDNA=J023090B11;Manual Curation=April 9%2C 2010;Literature_PMID=20081045;Oryzabase=10428;Expression=AK071338;TENOR=Os02t0809700-01;KEGG=Os02t0809700-01
Chr02	irgsp1_rep	five_prime_UTR	34611242	34611324	.	-	.	Parent=Os02t0809700-01
Chr02	irgsp1_rep	CDS	34610759	34611241	.	-	0	Parent=Os02t0809700-01
Chr02	irgsp1_rep	three_prime_UTR	34609403	34610758	.	-	.	Parent=Os02t0809700-01
Chr02	irgsp1_rep	mRNA	34609725	34615015	.	+	.	ID=Os02t0809800-01;Name=Os02t0809800-01;Locus_id=Os02g0809800;RAP-DB Gene Symbol Synonym(s)=PHO1%3B2%2C OsPHO1%3B2;RAP-DB Gene Name Synonym(s)=PHOSPHATE TRANSPORTER 1%3B2%2C PHOSPHATE1%3B2;CGSNL Gene Symbol=PHO1%3B2;CGSNL Gene Name=PHOSPHATE TRANSPORTER 1%3B2;Oryzabase Gene Symbol Synonym(s)=OsPHO1%3B2;Oryzabase Gene Name Synonym(s)=PHOSPHATE1%3B2;Note=Phosphate (Pi) transporter%2C Root-to-shoot Pi transfer;Transcript_evidence=AK100323 (Genbank);ORF_evidence=Q6K991 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=SPX%2C N-terminal (IPR004331),EXS%2C C-terminal (IPR004342);NIAS_FLcDNA=J023079I02;Manual Curation=April 9%2C 2010;Literature_PMID=20081045;Oryzabase=10425;Expression=AK100323;TENOR=Os02t0809800-01;KEGG=Os02t0809800-01
Chr02	irgsp1_rep	five_prime_UTR	34609725	34609897	.	+	.	Parent=Os02t0809800-01
Chr02	irgsp1_rep	CDS	34609898	34610170	.	+	0	Parent=Os02t0809800-01
Chr02	irgsp1_rep	CDS	34610270	34610323	.	+	0	Parent=Os02t0809800-01
Chr02	irgsp1_rep	CDS	34610413	34610704	.	+	0	Parent=Os02t0809800-01
Chr02	irgsp1_rep	CDS	34610823	34611219	.	+	2	Parent=Os02t0809800-01
Chr02	irgsp1_rep	CDS	34611887	34611938	.	+	1	Parent=Os02t0809800-01
Chr02	irgsp1_rep	CDS	34612278	34612352	.	+	0	Parent=Os02t0809800-01
Chr02	irgsp1_rep	CDS	34612484	34612611	.	+	0	Parent=Os02t0809800-01
Chr02	irgsp1_rep	CDS	34612717	34612839	.	+	1	Parent=Os02t0809800-01
Chr02	irgsp1_rep	CDS	34613095	34613338	.	+	1	Parent=Os02t0809800-01
Chr02	irgsp1_rep	CDS	34613429	34613533	.	+	0	Parent=Os02t0809800-01
Chr02	irgsp1_rep	CDS	34613617	34613661	.	+	0	Parent=Os02t0809800-01
Chr02	irgsp1_rep	CDS	34613750	34613902	.	+	0	Parent=Os02t0809800-01
Chr02	irgsp1_rep	CDS	34613988	34614269	.	+	0	Parent=Os02t0809800-01
Chr02	irgsp1_rep	CDS	34614351	34614487	.	+	0	Parent=Os02t0809800-01
Chr02	irgsp1_rep	CDS	34614572	34614659	.	+	1	Parent=Os02t0809800-01
Chr02	irgsp1_rep	three_prime_UTR	34614660	34615015	.	+	.	Parent=Os02t0809800-01
Chr02	irgsp1_rep	mRNA	34615105	34616451	.	-	.	ID=Os02t0809900-01;Name=Os02t0809900-01;Locus_id=Os02g0809900;Note=Quinoprotein amine dehydrogenase%2C beta chain-like domain containing protein.;Transcript_evidence=AK241642 (DDBJ%2C Best hit);ORF_evidence=NP_001048466.2 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943);NIAS_FLcDNA=J065189G09;TENOR=Os02t0809900-01;KEGG=Os02t0809900-01
Chr02	irgsp1_rep	CDS	34616066	34616451	.	-	0	Parent=Os02t0809900-01
Chr02	irgsp1_rep	CDS	34615277	34615808	.	-	1	Parent=Os02t0809900-01
Chr02	irgsp1_rep	three_prime_UTR	34615105	34615276	.	-	.	Parent=Os02t0809900-01
Chr02	irgsp1_rep	mRNA	34619906	34620172	.	-	.	ID=Os02t0810000-01;Name=Os02t0810000-01;Locus_id=Os02g0810000;Note=Non-protein coding transcript.;Transcript_evidence=AK060586 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-024-B03;TENOR=Os02t0810000-01
Chr02	irgsp1_rep	exon	34619906	34620172	.	-	.	Parent=Os02t0810000-01
Chr02	irgsp1_rep	mRNA	34620216	34623665	.	-	.	ID=Os02t0810100-00;Name=Os02t0810100-00;Locus_id=Os02g0810100;Note=Ankyrin repeat containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001148125.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683),Protein of unknown function DUF3424 (IPR021832);TENOR=Os02t0810100-00;KEGG=Os02t0810100-00
Chr02	irgsp1_rep	CDS	34622160	34623665	.	-	0	Parent=Os02t0810100-00
Chr02	irgsp1_rep	CDS	34620216	34620611	.	-	0	Parent=Os02t0810100-00
Chr02	irgsp1_rep	mRNA	34632251	34636612	.	+	.	ID=Os02t0810200-01;Name=Os02t0810200-01;Locus_id=Os02g0810200;RAP-DB Gene Symbol Synonym(s)=STD1;RAP-DB Gene Name Synonym(s)=Stemless Dwarf 1%2C stemless dwarf 1;CGSNL Gene Symbol=STD1;CGSNL Gene Name=STEMLESS DWARF 1;Oryzabase Gene Symbol Synonym(s)=OsSTD1;Oryzabase Gene Name Synonym(s)=Stemless Dwarf 1;Note=Kinesin-related protein%2C Regulation of cell division and plant development;Transcript_evidence=AK059635 (truncated);ORF_evidence=Q6K990;GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524),Molecular Function: microtubule binding (GO:0008017);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),Kinesin motor domain superfamily (IPR036961),Kinesin motor domain (IPR001752);NIAS_FLcDNA=001-031-A08 (truncated);Manual Curation=October 3%2C 2018;Literature_PMID=30071144;Oryzabase=22599;Expression=AK059635;TENOR=Os02t0810200-01;KEGG=Os02t0810200-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=phragmoplast (GO:0009524) [midzone]
Chr02	irgsp1_rep	CDS	34632251	34632931	.	+	0	Parent=Os02t0810200-01
Chr02	irgsp1_rep	CDS	34633490	34633645	.	+	0	Parent=Os02t0810200-01
Chr02	irgsp1_rep	CDS	34633746	34633853	.	+	0	Parent=Os02t0810200-01
Chr02	irgsp1_rep	CDS	34634285	34634395	.	+	0	Parent=Os02t0810200-01
Chr02	irgsp1_rep	CDS	34634492	34635928	.	+	0	Parent=Os02t0810200-01
Chr02	irgsp1_rep	CDS	34636105	34636359	.	+	0	Parent=Os02t0810200-01
Chr02	irgsp1_rep	three_prime_UTR	34636360	34636612	.	+	.	Parent=Os02t0810200-01
Chr02	irgsp1_rep	mRNA	34637887	34641020	.	+	.	ID=Os02t0810300-01;Name=Os02t0810300-01;Locus_id=Os02g0810300;CGSNL Gene Symbol=ABCI14;CGSNL Gene Name=ABC TRANSPORTER I FAMILY MEMBER 14;Oryzabase Gene Symbol Synonym(s)=OsABCI14;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCI subgroup member 14;Note=Similar to NBD-like protein.;Transcript_evidence=AK059363 (DDBJ%2C Best hit),AK099203 (DDBJ%2C Best hit);ORF_evidence=NP_001149302.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593);NIAS_FLcDNA=001-026-E03,J023118L21;Oryzabase=12037;TENOR=Os02t0810300-01
Chr02	irgsp1_rep	five_prime_UTR	34637887	34637956	.	+	.	Parent=Os02t0810300-01
Chr02	irgsp1_rep	CDS	34637957	34638110	.	+	0	Parent=Os02t0810300-01
Chr02	irgsp1_rep	CDS	34638828	34638988	.	+	2	Parent=Os02t0810300-01
Chr02	irgsp1_rep	CDS	34639414	34639465	.	+	0	Parent=Os02t0810300-01
Chr02	irgsp1_rep	CDS	34639796	34639932	.	+	2	Parent=Os02t0810300-01
Chr02	irgsp1_rep	CDS	34640282	34640368	.	+	0	Parent=Os02t0810300-01
Chr02	irgsp1_rep	CDS	34640446	34640733	.	+	0	Parent=Os02t0810300-01
Chr02	irgsp1_rep	three_prime_UTR	34640734	34641020	.	+	.	Parent=Os02t0810300-01
Chr02	irgsp1_rep	mRNA	34644872	34649100	.	+	.	ID=Os02t0810400-01;Name=Os02t0810400-01;Locus_id=Os02g0810400;Note=Similar to Dual specificity kinase 1.;Transcript_evidence=AK111554 (DDBJ%2C Best hit);ORF_evidence=NP_001151631.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013052A13;Expression=AK111554;TENOR=Os02t0810400-01;KEGG=Os02t0810400-01 (EC:2.7.11.1)
Chr02	irgsp1_rep	five_prime_UTR	34644872	34645359	.	+	.	Parent=Os02t0810400-01
Chr02	irgsp1_rep	CDS	34645360	34645435	.	+	0	Parent=Os02t0810400-01
Chr02	irgsp1_rep	CDS	34645545	34645585	.	+	2	Parent=Os02t0810400-01
Chr02	irgsp1_rep	CDS	34645824	34645893	.	+	0	Parent=Os02t0810400-01
Chr02	irgsp1_rep	CDS	34646006	34646154	.	+	2	Parent=Os02t0810400-01
Chr02	irgsp1_rep	CDS	34646291	34646386	.	+	0	Parent=Os02t0810400-01
Chr02	irgsp1_rep	CDS	34646913	34646983	.	+	0	Parent=Os02t0810400-01
Chr02	irgsp1_rep	CDS	34647144	34647205	.	+	1	Parent=Os02t0810400-01
Chr02	irgsp1_rep	CDS	34647285	34647348	.	+	2	Parent=Os02t0810400-01
Chr02	irgsp1_rep	CDS	34647457	34647541	.	+	1	Parent=Os02t0810400-01
Chr02	irgsp1_rep	CDS	34647636	34647762	.	+	0	Parent=Os02t0810400-01
Chr02	irgsp1_rep	CDS	34647888	34647961	.	+	2	Parent=Os02t0810400-01
Chr02	irgsp1_rep	CDS	34648046	34648106	.	+	0	Parent=Os02t0810400-01
Chr02	irgsp1_rep	CDS	34648190	34648278	.	+	2	Parent=Os02t0810400-01
Chr02	irgsp1_rep	CDS	34648404	34648727	.	+	0	Parent=Os02t0810400-01
Chr02	irgsp1_rep	three_prime_UTR	34648728	34649100	.	+	.	Parent=Os02t0810400-01
Chr02	irgsp1_rep	mRNA	34645171	34649125	.	-	.	ID=Os02t0810425-00;Name=Os02t0810425-00;Locus_id=Os02g0810425;Note=Non-protein coding transcript.;Transcript_evidence=tplb0035e01 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os02t0810425-00
Chr02	irgsp1_rep	exon	34648378	34649125	.	-	.	Parent=Os02t0810425-00
Chr02	irgsp1_rep	exon	34648187	34648266	.	-	.	Parent=Os02t0810425-00
Chr02	irgsp1_rep	exon	34648024	34648103	.	-	.	Parent=Os02t0810425-00
Chr02	irgsp1_rep	exon	34647886	34647942	.	-	.	Parent=Os02t0810425-00
Chr02	irgsp1_rep	exon	34647639	34647760	.	-	.	Parent=Os02t0810425-00
Chr02	irgsp1_rep	exon	34647448	34647544	.	-	.	Parent=Os02t0810425-00
Chr02	irgsp1_rep	exon	34647284	34647337	.	-	.	Parent=Os02t0810425-00
Chr02	irgsp1_rep	exon	34647151	34647204	.	-	.	Parent=Os02t0810425-00
Chr02	irgsp1_rep	exon	34646273	34646995	.	-	.	Parent=Os02t0810425-00
Chr02	irgsp1_rep	exon	34646020	34646133	.	-	.	Parent=Os02t0810425-00
Chr02	irgsp1_rep	exon	34645788	34645905	.	-	.	Parent=Os02t0810425-00
Chr02	irgsp1_rep	exon	34645171	34645431	.	-	.	Parent=Os02t0810425-00
Chr02	irgsp1_rep	mRNA	34649425	34653705	.	+	.	ID=Os02t0810450-01;Name=Os02t0810450-01;Locus_id=Os02g0810450;Note=Similar to endoribonuclease.;Transcript_evidence=AK287973 (DDBJ%2C Best hit);ORF_evidence=NP_187098.2 (RefSeq);InterPro=Domain of unknown function DUF71%2C ATP-binding domain (IPR002761),Endoribonuclease L-PSP (IPR006175),Endoribonuclease L-PSP/chorismate mutase-like (IPR013813),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J075077I11;TENOR=Os02t0810450-01;KEGG=Os02t0810450-01
Chr02	irgsp1_rep	five_prime_UTR	34649425	34649645	.	+	.	Parent=Os02t0810450-01
Chr02	irgsp1_rep	CDS	34649646	34649721	.	+	0	Parent=Os02t0810450-01
Chr02	irgsp1_rep	CDS	34649804	34649877	.	+	2	Parent=Os02t0810450-01
Chr02	irgsp1_rep	CDS	34650013	34650090	.	+	0	Parent=Os02t0810450-01
Chr02	irgsp1_rep	CDS	34650194	34650421	.	+	0	Parent=Os02t0810450-01
Chr02	irgsp1_rep	CDS	34650522	34650554	.	+	0	Parent=Os02t0810450-01
Chr02	irgsp1_rep	CDS	34650670	34650752	.	+	0	Parent=Os02t0810450-01
Chr02	irgsp1_rep	CDS	34651029	34651101	.	+	1	Parent=Os02t0810450-01
Chr02	irgsp1_rep	CDS	34651341	34651677	.	+	0	Parent=Os02t0810450-01
Chr02	irgsp1_rep	CDS	34651809	34652140	.	+	2	Parent=Os02t0810450-01
Chr02	irgsp1_rep	CDS	34652323	34652642	.	+	0	Parent=Os02t0810450-01
Chr02	irgsp1_rep	CDS	34652768	34653119	.	+	1	Parent=Os02t0810450-01
Chr02	irgsp1_rep	CDS	34653198	34653413	.	+	0	Parent=Os02t0810450-01
Chr02	irgsp1_rep	three_prime_UTR	34653414	34653705	.	+	.	Parent=Os02t0810450-01
Chr02	irgsp1_rep	mRNA	34654287	34658774	.	+	.	ID=Os02t0810500-01;Name=Os02t0810500-01;Locus_id=Os02g0810500;Note=RabGAP/TBC domain containing protein.;Transcript_evidence=AK071602 (DDBJ%2C Best hit);ORF_evidence=NP_001031730.1 (RefSeq);GO=Biological Process: regulation of Rab GTPase activity (GO:0032313),Cellular Component: intracellular (GO:0005622),Molecular Function: Rab GTPase activator activity (GO:0005097);InterPro=Rab-GAP/TBC domain (IPR000195);NIAS_FLcDNA=J023102D17;Expression=AK071602;TENOR=Os02t0810500-01;KEGG=Os02t0810500-01
Chr02	irgsp1_rep	five_prime_UTR	34654287	34654503	.	+	.	Parent=Os02t0810500-01
Chr02	irgsp1_rep	CDS	34654504	34654629	.	+	0	Parent=Os02t0810500-01
Chr02	irgsp1_rep	CDS	34655007	34655102	.	+	0	Parent=Os02t0810500-01
Chr02	irgsp1_rep	CDS	34655633	34655736	.	+	0	Parent=Os02t0810500-01
Chr02	irgsp1_rep	CDS	34655810	34656009	.	+	1	Parent=Os02t0810500-01
Chr02	irgsp1_rep	CDS	34656150	34656272	.	+	2	Parent=Os02t0810500-01
Chr02	irgsp1_rep	CDS	34656417	34656505	.	+	2	Parent=Os02t0810500-01
Chr02	irgsp1_rep	CDS	34657451	34657556	.	+	0	Parent=Os02t0810500-01
Chr02	irgsp1_rep	CDS	34657680	34657777	.	+	2	Parent=Os02t0810500-01
Chr02	irgsp1_rep	CDS	34657986	34658231	.	+	0	Parent=Os02t0810500-01
Chr02	irgsp1_rep	CDS	34658333	34658416	.	+	0	Parent=Os02t0810500-01
Chr02	irgsp1_rep	CDS	34658518	34658529	.	+	0	Parent=Os02t0810500-01
Chr02	irgsp1_rep	three_prime_UTR	34658530	34658774	.	+	.	Parent=Os02t0810500-01
Chr02	irgsp1_rep	mRNA	34659398	34660954	.	+	.	ID=Os02t0810600-00;Name=Os02t0810600-00;Locus_id=Os02g0810600;Note=Hypothetical conserved gene.;Transcript_evidence=EU973870 (DDBJ);ORF_evidence=NP_001152127.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=PAK-box/P21-Rho-binding (IPR000095);TENOR=Os02t0810600-00;KEGG=Os02t0810600-00
Chr02	irgsp1_rep	five_prime_UTR	34659398	34659598	.	+	.	Parent=Os02t0810600-00
Chr02	irgsp1_rep	five_prime_UTR	34660013	34660096	.	+	.	Parent=Os02t0810600-00
Chr02	irgsp1_rep	CDS	34660097	34660143	.	+	0	Parent=Os02t0810600-00
Chr02	irgsp1_rep	CDS	34660382	34660919	.	+	1	Parent=Os02t0810600-00
Chr02	irgsp1_rep	three_prime_UTR	34660920	34660954	.	+	.	Parent=Os02t0810600-00
Chr02	irgsp1_rep	mRNA	34673360	34676313	.	+	.	ID=Os02t0810900-01;Name=Os02t0810900-01;Locus_id=Os02g0810900;CGSNL Gene Symbol=NAC32;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 32;Oryzabase Gene Symbol Synonym(s)=ONAC032%2C ONAC32%2C ONAC056%2C ONAC56;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 032%2C NAC domain-containing protein 32%2C NAC domain-containing protein 56;Note=Similar to NAC-domain containing protein 21/22 (ANAC021) (ANAC022). Splice isoform 2.;Transcript_evidence=AK070982 (DDBJ%2C Best hit);ORF_evidence=C3PU45 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=J023075A01;Oryzabase=11477;Expression=AK070982;TENOR=Os02t0810900-01;KEGG=Os02t0810900-01
Chr02	irgsp1_rep	five_prime_UTR	34673360	34673591	.	+	.	Parent=Os02t0810900-01
Chr02	irgsp1_rep	CDS	34673592	34673790	.	+	0	Parent=Os02t0810900-01
Chr02	irgsp1_rep	CDS	34674843	34675129	.	+	2	Parent=Os02t0810900-01
Chr02	irgsp1_rep	CDS	34675502	34676011	.	+	0	Parent=Os02t0810900-01
Chr02	irgsp1_rep	three_prime_UTR	34676012	34676313	.	+	.	Parent=Os02t0810900-01
Chr02	irgsp1_rep	mRNA	34673486	34676309	.	+	.	ID=Os02t0810900-02;Name=Os02t0810900-02;Locus_id=Os02g0810900;CGSNL Gene Symbol=NAC32;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 32;Oryzabase Gene Symbol Synonym(s)=ONAC032%2C ONAC32%2C ONAC056%2C ONAC56;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 032%2C NAC domain-containing protein 32%2C NAC domain-containing protein 56;Note=Similar to NAC-domain containing protein 21/22 (ANAC021) (ANAC022). Splice isoform 2.;Transcript_evidence=AK060976 (DDBJ%2C Best hit);ORF_evidence=C3PU45 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=006-202-E09;Oryzabase=11477;Expression=AK060976;TENOR=Os02t0810900-02;KEGG=Os02t0810900-02
Chr02	irgsp1_rep	five_prime_UTR	34673486	34673591	.	+	.	Parent=Os02t0810900-02
Chr02	irgsp1_rep	CDS	34673592	34673790	.	+	0	Parent=Os02t0810900-02
Chr02	irgsp1_rep	CDS	34674843	34675129	.	+	2	Parent=Os02t0810900-02
Chr02	irgsp1_rep	CDS	34675502	34676011	.	+	0	Parent=Os02t0810900-02
Chr02	irgsp1_rep	three_prime_UTR	34676012	34676309	.	+	.	Parent=Os02t0810900-02
Chr02	irgsp1_rep	mRNA	34687624	34689723	.	-	.	ID=Os02t0811000-01;Name=Os02t0811000-01;Locus_id=Os02g0811000;RAP-DB Gene Symbol Synonym(s)=G1L6%2C AFD1%2C OsG1L6%2C TH1;RAP-DB Gene Name Synonym(s)=G1 LIKE PROTEIN 6%2C ABNORMAL FLOWER AND DWARF1%2C TRIANGULAR HULL1;CGSNL Gene Symbol=BLS1;CGSNL Gene Name=BEAK LIKE SPIKELET 1;Oryzabase Gene Symbol Synonym(s)=OsBLS1%2C OsG1L6%2C G1L6%2C TH1%2C OsTH1%2C TH1/BSG1/BLS1/AFD1%2C BSG1%2C OsBSG1%2C AFD1%2C OsAFD1%2C BH1%2C OsBH1;Oryzabase Gene Name Synonym(s)=G1 LIKE PROTEIN 6%2C TRIANGULAR HULL1%2C TRIANGULAR HULL 1%2C BEAK LIKE SPIKELET1%2C abnormal ower and dwarf1%2C beak-shaped grain1%2C BEAK-SHAPED GRAIN 1%2C ABNORMAL FLOWER AND DWARF 1;Note=DUF640 domain containing protein%2C ALOG domain-containing nuclear protein%2C Reguration of plant height%2C floral development and grain yield%2C Spikelet morphogenesis;Transcript_evidence=AB512495,AK111446;ORF_evidence=Q6K5X1;InterPro=ALOG domain (IPR006936);NIAS_FLcDNA=002-183-B03;Manual Curation=December 3%2C 2015;Literature_PMID=26486996,25224972,19901325;Oryzabase=8887;Expression=AK111446;TENOR=Os02t0811000-01;KEGG=Os02t0811000-01
Chr02	irgsp1_rep	five_prime_UTR	34689252	34689723	.	-	.	Parent=Os02t0811000-01
Chr02	irgsp1_rep	five_prime_UTR	34689124	34689154	.	-	.	Parent=Os02t0811000-01
Chr02	irgsp1_rep	CDS	34688377	34689123	.	-	0	Parent=Os02t0811000-01
Chr02	irgsp1_rep	three_prime_UTR	34688142	34688376	.	-	.	Parent=Os02t0811000-01
Chr02	irgsp1_rep	three_prime_UTR	34687624	34687725	.	-	.	Parent=Os02t0811000-01
Chr02	irgsp1_rep	mRNA	34706500	34707283	.	-	.	ID=Os02t0811101-00;Name=Os02t0811101-00;Locus_id=Os02g0811101;Note=Conserved hypothetical protein.;Transcript_evidence=FP095473 (DDBJ);ORF_evidence=NP_001147425.1 (RefSeq);TENOR=Os02t0811101-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	34707262	34707283	.	-	.	Parent=Os02t0811101-00
Chr02	irgsp1_rep	CDS	34707098	34707261	.	-	0	Parent=Os02t0811101-00
Chr02	irgsp1_rep	CDS	34706802	34707024	.	-	1	Parent=Os02t0811101-00
Chr02	irgsp1_rep	three_prime_UTR	34706500	34706801	.	-	.	Parent=Os02t0811101-00
Chr02	irgsp1_rep	mRNA	34720866	34723416	.	+	.	ID=Os02t0811200-00;Name=Os02t0811200-00;Locus_id=Os02g0811200;CGSNL Gene Symbol=WAK24;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 24;Oryzabase Gene Symbol Synonym(s)=OsWAK24;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=BT084280 (DDBJ);ORF_evidence=NP_001048474.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441);Oryzabase=6925;TENOR=Os02t0811200-00;KEGG=Os02t0811200-00
Chr02	irgsp1_rep	CDS	34720866	34721811	.	+	0	Parent=Os02t0811200-00
Chr02	irgsp1_rep	CDS	34721908	34722075	.	+	2	Parent=Os02t0811200-00
Chr02	irgsp1_rep	CDS	34722179	34723359	.	+	2	Parent=Os02t0811200-00
Chr02	irgsp1_rep	three_prime_UTR	34723360	34723416	.	+	.	Parent=Os02t0811200-00
Chr02	irgsp1_rep	mRNA	34742561	34743972	.	+	.	ID=Os02t0811400-00;Name=Os02t0811400-00;Locus_id=Os02g0811400;Oryzabase Gene Symbol Synonym(s)=CCR1%2C OsCCR1%2C OsCCR12%2C CCR12;Oryzabase Gene Name Synonym(s)=cinnamoyl-CoA reductase 1%2C cinnamoyl-CoA reductase 12;Note=Similar to Cinnamoyl CoA reductase.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8VXA7 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);Oryzabase=19683;TENOR=Os02t0811400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	34742561	34742705	.	+	0	Parent=Os02t0811400-00
Chr02	irgsp1_rep	CDS	34742800	34742954	.	+	2	Parent=Os02t0811400-00
Chr02	irgsp1_rep	CDS	34743048	34743230	.	+	0	Parent=Os02t0811400-00
Chr02	irgsp1_rep	CDS	34743332	34743684	.	+	0	Parent=Os02t0811400-00
Chr02	irgsp1_rep	CDS	34743795	34743972	.	+	1	Parent=Os02t0811400-00
Chr02	irgsp1_rep	mRNA	34745304	34745587	.	-	.	ID=Os02t0811501-00;Name=Os02t0811501-00;Locus_id=Os02g0811501;Note=Similar to predicted protein.;Transcript_evidence=EU940750 (DDBJ);ORF_evidence=XP_002327722.1 (RefSeq);TENOR=Os02t0811501-00;KEGG=Os02t0811501-00
Chr02	irgsp1_rep	five_prime_UTR	34745530	34745587	.	-	.	Parent=Os02t0811501-00
Chr02	irgsp1_rep	CDS	34745368	34745529	.	-	0	Parent=Os02t0811501-00
Chr02	irgsp1_rep	three_prime_UTR	34745304	34745367	.	-	.	Parent=Os02t0811501-00
Chr02	irgsp1_rep	mRNA	34757658	34759138	.	+	.	ID=Os02t0811600-00;Name=Os02t0811600-00;Locus_id=Os02g0811600;CGSNL Gene Symbol=CCR13;CGSNL Gene Name=CINNAMOYL-COA REDUCTASE 13;Oryzabase Gene Symbol Synonym(s)=OsCCR13;Oryzabase Gene Name Synonym(s)=Cinnamoyl-CoA reductase 13;Note=Similar to Cinnamoyl CoA reductase.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8VXA7 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);Oryzabase=22245;TENOR=Os02t0811600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	34757658	34757987	.	+	0	Parent=Os02t0811600-00
Chr02	irgsp1_rep	CDS	34758356	34758705	.	+	0	Parent=Os02t0811600-00
Chr02	irgsp1_rep	CDS	34758937	34759138	.	+	1	Parent=Os02t0811600-00
Chr02	irgsp1_rep	mRNA	34759908	34760198	.	-	.	ID=Os02t0811650-00;Name=Os02t0811650-00;Locus_id=Os02g0811650;Note=Similar to predicted protein.;Transcript_evidence=EU941089 (DDBJ);ORF_evidence=XP_002327722.1 (RefSeq);TENOR=Os02t0811650-00;KEGG=Os02t0811650-00
Chr02	irgsp1_rep	five_prime_UTR	34760141	34760198	.	-	.	Parent=Os02t0811650-00
Chr02	irgsp1_rep	CDS	34759937	34760140	.	-	0	Parent=Os02t0811650-00
Chr02	irgsp1_rep	three_prime_UTR	34759908	34759936	.	-	.	Parent=Os02t0811650-00
Chr02	irgsp1_rep	mRNA	34764348	34766529	.	+	.	ID=Os02t0811800-01;Name=Os02t0811800-01;Locus_id=Os02g0811800;CGSNL Gene Symbol=CCR10;CGSNL Gene Name=CINNAMOYL-COA REDUCTASE 10;Oryzabase Gene Symbol Synonym(s)=OsCCR10%2C CCR10;Oryzabase Gene Name Synonym(s)=Dihydrofolate-4-reductase%2C Cinnamoyl-CoA reductase 10%2C OsCINNAMOYL-COENZYME A REDUCTASE10%2C CINNAMOYL-COENZYME A REDUCTASE 10;Note=Similar to Cinnamoyl-CoA reductase (EC 1.2.1.44).;Transcript_evidence=AK119257 (DDBJ%2C Best hit),AK063935 (DDBJ%2C Best hit);ORF_evidence=Q8VXA7 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-123-H06,001-123-D09;Oryzabase=16693;Expression=AK119257;TENOR=Os02t0811800-01;KEGG=Os02t0811800-01 (EC:1.2.1.44)
Chr02	irgsp1_rep	five_prime_UTR	34764348	34764497	.	+	.	Parent=Os02t0811800-01
Chr02	irgsp1_rep	CDS	34764498	34764806	.	+	0	Parent=Os02t0811800-01
Chr02	irgsp1_rep	CDS	34764894	34765076	.	+	0	Parent=Os02t0811800-01
Chr02	irgsp1_rep	CDS	34765163	34765512	.	+	0	Parent=Os02t0811800-01
Chr02	irgsp1_rep	CDS	34766068	34766245	.	+	1	Parent=Os02t0811800-01
Chr02	irgsp1_rep	three_prime_UTR	34766246	34766529	.	+	.	Parent=Os02t0811800-01
Chr02	irgsp1_rep	mRNA	34767380	34768451	.	-	.	ID=Os02t0811902-00;Name=Os02t0811902-00;Locus_id=Os02g0811902;Note=Hypothetical protein.;Transcript_evidence=AK335623 (DDBJ);ORF_evidence=GeneMark;TENOR=Os02t0811902-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	34768377	34768451	.	-	.	Parent=Os02t0811902-00
Chr02	irgsp1_rep	CDS	34768221	34768376	.	-	0	Parent=Os02t0811902-00
Chr02	irgsp1_rep	CDS	34767738	34768091	.	-	0	Parent=Os02t0811902-00
Chr02	irgsp1_rep	three_prime_UTR	34767699	34767737	.	-	.	Parent=Os02t0811902-00
Chr02	irgsp1_rep	three_prime_UTR	34767380	34767583	.	-	.	Parent=Os02t0811902-00
Chr02	irgsp1_rep	mRNA	34769644	34771168	.	+	.	ID=Os02t0812000-01;Name=Os02t0812000-01;Locus_id=Os02g0812000;CGSNL Gene Symbol=CCR11;CGSNL Gene Name=CINNAMOYL-COA REDUCTASE 11;Oryzabase Gene Symbol Synonym(s)=OsCCR11;Oryzabase Gene Name Synonym(s)=Cinnamoyl-CoA reductase 11;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK107665 (DDBJ%2C Best hit);ORF_evidence=Q8VXA7 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=002-131-H02;Oryzabase=22244;Expression=AK107665;TENOR=Os02t0812000-01;KEGG=Os02t0812000-01
Chr02	irgsp1_rep	five_prime_UTR	34769644	34769725	.	+	.	Parent=Os02t0812000-01
Chr02	irgsp1_rep	CDS	34769726	34770040	.	+	0	Parent=Os02t0812000-01
Chr02	irgsp1_rep	CDS	34770240	34770422	.	+	0	Parent=Os02t0812000-01
Chr02	irgsp1_rep	CDS	34770517	34770866	.	+	0	Parent=Os02t0812000-01
Chr02	irgsp1_rep	CDS	34770970	34771126	.	+	1	Parent=Os02t0812000-01
Chr02	irgsp1_rep	three_prime_UTR	34771127	34771168	.	+	.	Parent=Os02t0812000-01
Chr02	irgsp1_rep	mRNA	34784179	34793387	.	+	.	ID=Os02t0812400-01;Name=Os02t0812400-01;Locus_id=Os02g0812400;Note=Trimeric LpxA-like domain containing protein.;Transcript_evidence=AK119450 (DDBJ%2C Best hit),AK065919 (DDBJ%2C Best hit);ORF_evidence=B8AEV8 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Biological Process: RNA metabolic process (GO:0016070),Molecular Function: binding (GO:0005488),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=Bacterial transferase hexapeptide repeat (IPR001451),eIF4-gamma/eIF5/eIF2-epsilon (IPR003307),Nucleotidyl transferase (IPR005835),MIF4-like%2C type 1/2/3 (IPR016021),Armadillo-type fold (IPR016024);NIAS_FLcDNA=001-133-D07,J013049P14;TENOR=Os02t0812400-01
Chr02	irgsp1_rep	five_prime_UTR	34784179	34784255	.	+	.	Parent=Os02t0812400-01
Chr02	irgsp1_rep	CDS	34784256	34784399	.	+	0	Parent=Os02t0812400-01
Chr02	irgsp1_rep	CDS	34784488	34784727	.	+	0	Parent=Os02t0812400-01
Chr02	irgsp1_rep	CDS	34785143	34785457	.	+	0	Parent=Os02t0812400-01
Chr02	irgsp1_rep	CDS	34785609	34785716	.	+	0	Parent=Os02t0812400-01
Chr02	irgsp1_rep	CDS	34785819	34786011	.	+	0	Parent=Os02t0812400-01
Chr02	irgsp1_rep	CDS	34786569	34786831	.	+	2	Parent=Os02t0812400-01
Chr02	irgsp1_rep	CDS	34786968	34787097	.	+	0	Parent=Os02t0812400-01
Chr02	irgsp1_rep	CDS	34787226	34787293	.	+	2	Parent=Os02t0812400-01
Chr02	irgsp1_rep	CDS	34787458	34787706	.	+	0	Parent=Os02t0812400-01
Chr02	irgsp1_rep	CDS	34787791	34787864	.	+	0	Parent=Os02t0812400-01
Chr02	irgsp1_rep	CDS	34789559	34789650	.	+	1	Parent=Os02t0812400-01
Chr02	irgsp1_rep	CDS	34790110	34790192	.	+	2	Parent=Os02t0812400-01
Chr02	irgsp1_rep	CDS	34791844	34791915	.	+	0	Parent=Os02t0812400-01
Chr02	irgsp1_rep	CDS	34792065	34792190	.	+	0	Parent=Os02t0812400-01
Chr02	irgsp1_rep	CDS	34792503	34792544	.	+	0	Parent=Os02t0812400-01
Chr02	irgsp1_rep	three_prime_UTR	34792545	34793387	.	+	.	Parent=Os02t0812400-01
Chr02	irgsp1_rep	mRNA	34794245	34796635	.	+	.	ID=Os02t0812500-01;Name=Os02t0812500-01;Locus_id=Os02g0812500;Oryzabase Gene Symbol Synonym(s)=OsFbox115%2C Os_F0639;Oryzabase Gene Name Synonym(s)=F-box protein 115;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK106918 (DDBJ%2C Best hit);ORF_evidence=A2XAW9 (UniProt);NIAS_FLcDNA=002-119-B02;Oryzabase=16906;Expression=AK106918;TENOR=Os02t0812500-01;KEGG=Os02t0812500-01
Chr02	irgsp1_rep	five_prime_UTR	34794245	34794357	.	+	.	Parent=Os02t0812500-01
Chr02	irgsp1_rep	CDS	34794358	34794651	.	+	0	Parent=Os02t0812500-01
Chr02	irgsp1_rep	CDS	34794843	34794964	.	+	0	Parent=Os02t0812500-01
Chr02	irgsp1_rep	CDS	34795643	34796225	.	+	1	Parent=Os02t0812500-01
Chr02	irgsp1_rep	three_prime_UTR	34796226	34796635	.	+	.	Parent=Os02t0812500-01
Chr02	irgsp1_rep	mRNA	34798281	34801473	.	+	.	ID=Os02t0812600-00;Name=Os02t0812600-00;Locus_id=Os02g0812600;Oryzabase Gene Symbol Synonym(s)=OsFbox116%2C Os_F0291;Oryzabase Gene Name Synonym(s)=F-box protein 116;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6K3F5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=16907;TENOR=Os02t0812600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	34798281	34798562	.	+	0	Parent=Os02t0812600-00
Chr02	irgsp1_rep	CDS	34798723	34798841	.	+	0	Parent=Os02t0812600-00
Chr02	irgsp1_rep	CDS	34799646	34800171	.	+	1	Parent=Os02t0812600-00
Chr02	irgsp1_rep	CDS	34800267	34800382	.	+	0	Parent=Os02t0812600-00
Chr02	irgsp1_rep	CDS	34801146	34801473	.	+	1	Parent=Os02t0812600-00
Chr02	irgsp1_rep	mRNA	34802001	34814925	.	+	.	ID=Os02t0812700-00;Name=Os02t0812700-00;Locus_id=Os02g0812700;Oryzabase Gene Symbol Synonym(s)=OsFbox117%2C Os_F0679;Oryzabase Gene Name Synonym(s)=F-box protein 117;Note=Hypothetical conserved gene.;Transcript_evidence=CT836562 (DDBJ%2C Best hit);ORF_evidence=A2XAX1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=16908;TENOR=Os02t0812700-00;KEGG=Os02t0812700-00
Chr02	irgsp1_rep	five_prime_UTR	34802001	34802083	.	+	.	Parent=Os02t0812700-00
Chr02	irgsp1_rep	CDS	34802084	34802349	.	+	0	Parent=Os02t0812700-00
Chr02	irgsp1_rep	CDS	34802437	34802500	.	+	1	Parent=Os02t0812700-00
Chr02	irgsp1_rep	three_prime_UTR	34802501	34802501	.	+	.	Parent=Os02t0812700-00
Chr02	irgsp1_rep	three_prime_UTR	34813610	34813666	.	+	.	Parent=Os02t0812700-00
Chr02	irgsp1_rep	three_prime_UTR	34814279	34814925	.	+	.	Parent=Os02t0812700-00
Chr02	irgsp1_rep	mRNA	34817687	34822954	.	+	.	ID=Os02t0813000-00;Name=Os02t0813000-00;Locus_id=Os02g0813000;Oryzabase Gene Symbol Synonym(s)=OsFbox118%2C Os_F0460%2C OsFbox119%2C Os_F0693;Oryzabase Gene Name Synonym(s)=F-box protein 118%2C F-box protein 119;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=EU966026 (DDBJ);ORF_evidence=B8AEV9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=16909,16910;TENOR=Os02t0813000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	34817687	34818049	.	+	0	Parent=Os02t0813000-00
Chr02	irgsp1_rep	CDS	34821735	34821853	.	+	0	Parent=Os02t0813000-00
Chr02	irgsp1_rep	CDS	34822532	34822742	.	+	1	Parent=Os02t0813000-00
Chr02	irgsp1_rep	three_prime_UTR	34822743	34822954	.	+	.	Parent=Os02t0813000-00
Chr02	irgsp1_rep	mRNA	34819425	34819769	.	+	.	ID=Os02t0813083-00;Name=Os02t0813083-00;Locus_id=Os02g0813083;Oryzabase Gene Symbol Synonym(s)=OsFbox118%2C Os_F0460;Oryzabase Gene Name Synonym(s)=F-box protein 118;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3ACK8 (UniProt);Oryzabase=16909;TENOR=Os02t0813083-00
Chr02	irgsp1_rep	CDS	34819425	34819769	.	+	0	Parent=Os02t0813083-00
Chr02	irgsp1_rep	mRNA	34824765	34825820	.	+	.	ID=Os02t0813166-00;Name=Os02t0813166-00;Locus_id=Os02g0813166;Oryzabase Gene Symbol Synonym(s)=OsFbox119%2C Os_F0693;Oryzabase Gene Name Synonym(s)=F-box protein 119;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001173205.1 (RefSeq);InterPro=F-box domain%2C Skp2-like (IPR022364);Oryzabase=16910;TENOR=Os02t0813166-00;KEGG=Os02t0813166-00
Chr02	irgsp1_rep	CDS	34824765	34825049	.	+	0	Parent=Os02t0813166-00
Chr02	irgsp1_rep	CDS	34825147	34825265	.	+	0	Parent=Os02t0813166-00
Chr02	irgsp1_rep	CDS	34825436	34825820	.	+	1	Parent=Os02t0813166-00
Chr02	irgsp1_rep	mRNA	34829080	34831267	.	-	.	ID=Os02t0813183-00;Name=Os02t0813183-00;Locus_id=Os02g0813183;Note=Hypothetical protein.;Transcript_evidence=tplb0043a14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0813183-00
Chr02	irgsp1_rep	five_prime_UTR	34831172	34831267	.	-	.	Parent=Os02t0813183-00
Chr02	irgsp1_rep	CDS	34831127	34831171	.	-	0	Parent=Os02t0813183-00
Chr02	irgsp1_rep	CDS	34830714	34831019	.	-	0	Parent=Os02t0813183-00
Chr02	irgsp1_rep	three_prime_UTR	34830689	34830713	.	-	.	Parent=Os02t0813183-00
Chr02	irgsp1_rep	three_prime_UTR	34830510	34830590	.	-	.	Parent=Os02t0813183-00
Chr02	irgsp1_rep	three_prime_UTR	34829997	34830428	.	-	.	Parent=Os02t0813183-00
Chr02	irgsp1_rep	three_prime_UTR	34829080	34829818	.	-	.	Parent=Os02t0813183-00
Chr02	irgsp1_rep	mRNA	34829856	34831322	.	+	.	ID=Os02t0813200-00;Name=Os02t0813200-00;Locus_id=Os02g0813200;Note=Myb/SANT-like domain domain containing protein.;Transcript_evidence=EU975340 (DDBJ);ORF_evidence=NP_001048483.2 (RefSeq);InterPro=Myb/SANT-like domain (IPR024752);TENOR=Os02t0813200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	34829856	34830042	.	+	0	Parent=Os02t0813200-00
Chr02	irgsp1_rep	CDS	34830122	34830429	.	+	2	Parent=Os02t0813200-00
Chr02	irgsp1_rep	CDS	34830511	34830583	.	+	0	Parent=Os02t0813200-00
Chr02	irgsp1_rep	CDS	34830682	34831322	.	+	2	Parent=Os02t0813200-00
Chr02	irgsp1_rep	mRNA	34833967	34835972	.	+	.	ID=Os02t0813350-01;Name=Os02t0813350-01;Locus_id=Os02g0813350;Oryzabase Gene Symbol Synonym(s)=OsFbox120%2C Os_F0441;Oryzabase Gene Name Synonym(s)=F-box protein 120;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK098981 (DDBJ%2C Best hit);ORF_evidence=NP_001150987.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013092F18;Oryzabase=16911;TENOR=Os02t0813350-01
Chr02	irgsp1_rep	five_prime_UTR	34833967	34833973	.	+	.	Parent=Os02t0813350-01
Chr02	irgsp1_rep	CDS	34833974	34834252	.	+	0	Parent=Os02t0813350-01
Chr02	irgsp1_rep	CDS	34834378	34834496	.	+	0	Parent=Os02t0813350-01
Chr02	irgsp1_rep	CDS	34835302	34835797	.	+	1	Parent=Os02t0813350-01
Chr02	irgsp1_rep	three_prime_UTR	34835798	34835972	.	+	.	Parent=Os02t0813350-01
Chr02	irgsp1_rep	mRNA	34837853	34843835	.	+	.	ID=Os02t0813500-01;Name=Os02t0813500-01;Locus_id=Os02g0813500;Oryzabase Gene Symbol Synonym(s)=OsGR2%2C RGRC2%2C GR2%2C OsGR%2C OsGR3%2C OsRGRC2;Oryzabase Gene Name Synonym(s)=glutathione reductase 2%2C glutathione reductase;Note=Glutathione reductase%2C cytosolic (EC 1.8.1.7) (GR) (GRase).;Transcript_evidence=AK100446 (DDBJ%2C Best hit);ORF_evidence=P48642 (UniProt);GO=Biological Process: glutathione metabolic process (GO:0006749),Biological Process: cell redox homeostasis (GO:0045454),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: cytoplasm (GO:0005737),Molecular Function: glutathione-disulfide reductase activity (GO:0004362),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on a sulfur group of donors%2C NAD or NADP as acceptor (GO:0016668),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=Pyridine nucleotide-disulphide oxidoreductase%2C dimerisation (IPR004099),Glutathione-disulphide reductase (IPR006324),Pyridine nucleotide-disulphide oxidoreductase%2C class I%2C active site (IPR012999),FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR013027),FAD/NAD-linked reductase%2C dimerisation (IPR016156),Pyridine nucleotide-disulphide oxidoreductase%2C FAD/NAD(P)-binding domain (IPR023753);NIAS_FLcDNA=J023090G17;Oryzabase=10209;Expression=AK100446;TENOR=Os02t0813500-01;KEGG=Os02t0813500-01 (EC:1.8.1.7)
Chr02	irgsp1_rep	five_prime_UTR	34837853	34837911	.	+	.	Parent=Os02t0813500-01
Chr02	irgsp1_rep	five_prime_UTR	34838116	34838141	.	+	.	Parent=Os02t0813500-01
Chr02	irgsp1_rep	CDS	34838142	34838282	.	+	0	Parent=Os02t0813500-01
Chr02	irgsp1_rep	CDS	34838385	34838449	.	+	0	Parent=Os02t0813500-01
Chr02	irgsp1_rep	CDS	34838603	34838672	.	+	1	Parent=Os02t0813500-01
Chr02	irgsp1_rep	CDS	34839006	34839077	.	+	0	Parent=Os02t0813500-01
Chr02	irgsp1_rep	CDS	34839175	34839378	.	+	0	Parent=Os02t0813500-01
Chr02	irgsp1_rep	CDS	34840300	34840373	.	+	0	Parent=Os02t0813500-01
Chr02	irgsp1_rep	CDS	34840472	34840555	.	+	1	Parent=Os02t0813500-01
Chr02	irgsp1_rep	CDS	34841089	34841176	.	+	1	Parent=Os02t0813500-01
Chr02	irgsp1_rep	CDS	34841270	34841351	.	+	0	Parent=Os02t0813500-01
Chr02	irgsp1_rep	CDS	34841685	34841758	.	+	2	Parent=Os02t0813500-01
Chr02	irgsp1_rep	CDS	34841981	34842088	.	+	0	Parent=Os02t0813500-01
Chr02	irgsp1_rep	CDS	34842190	34842254	.	+	0	Parent=Os02t0813500-01
Chr02	irgsp1_rep	CDS	34842824	34842937	.	+	1	Parent=Os02t0813500-01
Chr02	irgsp1_rep	CDS	34843151	34843250	.	+	1	Parent=Os02t0813500-01
Chr02	irgsp1_rep	CDS	34843347	34843400	.	+	0	Parent=Os02t0813500-01
Chr02	irgsp1_rep	CDS	34843479	34843574	.	+	0	Parent=Os02t0813500-01
Chr02	irgsp1_rep	three_prime_UTR	34843575	34843835	.	+	.	Parent=Os02t0813500-01
Chr02	irgsp1_rep	mRNA	34837869	34842870	.	+	.	ID=Os02t0813500-02;Name=Os02t0813500-02;Locus_id=Os02g0813500;Oryzabase Gene Symbol Synonym(s)=OsGR2%2C RGRC2%2C GR2%2C OsGR%2C OsGR3%2C OsRGRC2;Oryzabase Gene Name Synonym(s)=glutathione reductase 2%2C glutathione reductase;Note=Similar to Glutathione reductase%2C cytosolic.;Transcript_evidence=AK066398 (DDBJ%2C Best hit);ORF_evidence=P48642 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Pyridine nucleotide-disulphide oxidoreductase%2C NAD-binding domain (IPR001327),FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR013027);NIAS_FLcDNA=J013060B04;Oryzabase=10209;Expression=AK066398;TENOR=Os02t0813500-02;KEGG=Os02t0813500-02 (EC:1.8.1.7)
Chr02	irgsp1_rep	five_prime_UTR	34837869	34837869	.	+	.	Parent=Os02t0813500-02
Chr02	irgsp1_rep	CDS	34837870	34837911	.	+	0	Parent=Os02t0813500-02
Chr02	irgsp1_rep	CDS	34839006	34839077	.	+	0	Parent=Os02t0813500-02
Chr02	irgsp1_rep	CDS	34839175	34839378	.	+	0	Parent=Os02t0813500-02
Chr02	irgsp1_rep	CDS	34840300	34840373	.	+	0	Parent=Os02t0813500-02
Chr02	irgsp1_rep	CDS	34840472	34840555	.	+	1	Parent=Os02t0813500-02
Chr02	irgsp1_rep	CDS	34841089	34841185	.	+	1	Parent=Os02t0813500-02
Chr02	irgsp1_rep	three_prime_UTR	34841186	34842088	.	+	.	Parent=Os02t0813500-02
Chr02	irgsp1_rep	three_prime_UTR	34842824	34842870	.	+	.	Parent=Os02t0813500-02
Chr02	irgsp1_rep	mRNA	34842037	34843851	.	+	.	ID=Os02t0813500-03;Name=Os02t0813500-03;Locus_id=Os02g0813500;Oryzabase Gene Symbol Synonym(s)=OsGR2%2C RGRC2%2C GR2%2C OsGR%2C OsGR3%2C OsRGRC2;Oryzabase Gene Name Synonym(s)=glutathione reductase 2%2C glutathione reductase;Note=Similar to Glutathione reductase%2C cytosolic.;Transcript_evidence=AK058270 (DDBJ%2C Best hit);ORF_evidence=P48642 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: cytoplasm (GO:0005737),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Pyridine nucleotide-disulphide oxidoreductase%2C dimerisation (IPR004099),FAD/NAD-linked reductase%2C dimerisation (IPR016156);NIAS_FLcDNA=001-013-B06;Oryzabase=10209;Expression=AK058270;TENOR=Os02t0813500-03;KEGG=Os02t0813500-03 (EC:1.8.1.7)
Chr02	irgsp1_rep	five_prime_UTR	34842037	34842037	.	+	.	Parent=Os02t0813500-03
Chr02	irgsp1_rep	CDS	34842038	34842088	.	+	0	Parent=Os02t0813500-03
Chr02	irgsp1_rep	CDS	34842190	34842254	.	+	0	Parent=Os02t0813500-03
Chr02	irgsp1_rep	CDS	34842824	34842937	.	+	1	Parent=Os02t0813500-03
Chr02	irgsp1_rep	CDS	34843151	34843250	.	+	1	Parent=Os02t0813500-03
Chr02	irgsp1_rep	CDS	34843347	34843400	.	+	0	Parent=Os02t0813500-03
Chr02	irgsp1_rep	CDS	34843479	34843574	.	+	0	Parent=Os02t0813500-03
Chr02	irgsp1_rep	three_prime_UTR	34843575	34843851	.	+	.	Parent=Os02t0813500-03
Chr02	irgsp1_rep	mRNA	34853787	34855494	.	+	.	ID=Os02t0813600-01;Name=Os02t0813600-01;Locus_id=Os02g0813600;Oryzabase Gene Symbol Synonym(s)=KCS;Oryzabase Gene Name Synonym(s)=3-ketoacyl-CoA synthase;Note=Thiolase-like%2C subgroup domain containing protein.;Transcript_evidence=AK107210 (DDBJ%2C Best hit);ORF_evidence=A2XAX6 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: metabolic process (GO:0008152),Biological Process: lipid biosynthetic process (GO:0008610),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Very-long-chain 3-ketoacyl-CoA synthase (IPR012392),FAE1/Type III polyketide synthase-like protein (IPR013601),3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (IPR013747),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);NIAS_FLcDNA=002-125-C01;Oryzabase=23065;Expression=AK107210;TENOR=Os02t0813600-01;KEGG=Os02t0813600-01
Chr02	irgsp1_rep	five_prime_UTR	34853787	34853854	.	+	.	Parent=Os02t0813600-01
Chr02	irgsp1_rep	CDS	34853855	34855246	.	+	0	Parent=Os02t0813600-01
Chr02	irgsp1_rep	three_prime_UTR	34855247	34855494	.	+	.	Parent=Os02t0813600-01
Chr02	irgsp1_rep	mRNA	34862557	34872880	.	-	.	ID=Os02t0813800-01;Name=Os02t0813800-01;Locus_id=Os02g0813800;Oryzabase Gene Symbol Synonym(s)=OsWD40-58;Note=Similar to STYLOSA protein.;Transcript_evidence=AK103520 (DDBJ%2C Best hit);ORF_evidence=F1DJZ8 (UniProt);GO=Molecular Function: single-stranded DNA binding (GO:0003697),Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),LisH dimerisation motif (IPR006594),Sequence-specific single-strand DNA-binding protein (IPR008116),WD40 repeat-like-containing domain (IPR011046),LisH dimerisation motif%2C subgroup (IPR013720),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J033131I05;Oryzabase=10739;Expression=AK103520;TENOR=Os02t0813800-01;KEGG=Os02t0813800-01
Chr02	irgsp1_rep	five_prime_UTR	34872546	34872880	.	-	.	Parent=Os02t0813800-01
Chr02	irgsp1_rep	CDS	34872408	34872439	.	-	0	Parent=Os02t0813800-01
Chr02	irgsp1_rep	CDS	34872226	34872323	.	-	1	Parent=Os02t0813800-01
Chr02	irgsp1_rep	CDS	34870270	34870379	.	-	2	Parent=Os02t0813800-01
Chr02	irgsp1_rep	CDS	34869896	34870191	.	-	0	Parent=Os02t0813800-01
Chr02	irgsp1_rep	CDS	34869711	34869786	.	-	1	Parent=Os02t0813800-01
Chr02	irgsp1_rep	CDS	34869510	34869621	.	-	0	Parent=Os02t0813800-01
Chr02	irgsp1_rep	CDS	34869082	34869131	.	-	2	Parent=Os02t0813800-01
Chr02	irgsp1_rep	CDS	34868694	34868996	.	-	0	Parent=Os02t0813800-01
Chr02	irgsp1_rep	CDS	34868511	34868606	.	-	0	Parent=Os02t0813800-01
Chr02	irgsp1_rep	CDS	34865343	34865561	.	-	0	Parent=Os02t0813800-01
Chr02	irgsp1_rep	CDS	34865096	34865237	.	-	0	Parent=Os02t0813800-01
Chr02	irgsp1_rep	CDS	34864925	34865034	.	-	2	Parent=Os02t0813800-01
Chr02	irgsp1_rep	CDS	34864699	34864848	.	-	0	Parent=Os02t0813800-01
Chr02	irgsp1_rep	CDS	34864260	34864415	.	-	0	Parent=Os02t0813800-01
Chr02	irgsp1_rep	CDS	34864029	34864145	.	-	0	Parent=Os02t0813800-01
Chr02	irgsp1_rep	CDS	34863530	34863727	.	-	0	Parent=Os02t0813800-01
Chr02	irgsp1_rep	CDS	34862957	34863100	.	-	0	Parent=Os02t0813800-01
Chr02	irgsp1_rep	three_prime_UTR	34862557	34862956	.	-	.	Parent=Os02t0813800-01
Chr02	irgsp1_rep	mRNA	34862555	34862959	.	-	.	ID=Os02t0813800-02;Name=Os02t0813800-02;Locus_id=Os02g0813800;Oryzabase Gene Symbol Synonym(s)=OsWD40-58;Note=Non-protein coding transcript.;Transcript_evidence=AK063819 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-121-H11;Oryzabase=10739;TENOR=Os02t0813800-02
Chr02	irgsp1_rep	exon	34862555	34862959	.	-	.	Parent=Os02t0813800-02
Chr02	irgsp1_rep	mRNA	34879586	34880996	.	-	.	ID=Os02t0814000-01;Name=Os02t0814000-01;Locus_id=Os02g0814000;Note=Protein of unknown function DUF862%2C eukaryotic domain containing protein.;Transcript_evidence=AK060071 (DDBJ%2C Best hit),AK102943 (DDBJ%2C Best hit),AK104442 (DDBJ%2C Best hit);ORF_evidence=B6TIJ3 (UniProt);InterPro=Domain of unknown function DUF862%2C eukaryotic (IPR008580);NIAS_FLcDNA=006-306-A06,J033114L12,006-210-B11;Expression=AK060071;TENOR=Os02t0814000-01;KEGG=Os02t0814000-01
Chr02	irgsp1_rep	five_prime_UTR	34880842	34880996	.	-	.	Parent=Os02t0814000-01
Chr02	irgsp1_rep	CDS	34880833	34880841	.	-	0	Parent=Os02t0814000-01
Chr02	irgsp1_rep	CDS	34880630	34880727	.	-	0	Parent=Os02t0814000-01
Chr02	irgsp1_rep	CDS	34879890	34880541	.	-	1	Parent=Os02t0814000-01
Chr02	irgsp1_rep	three_prime_UTR	34879586	34879889	.	-	.	Parent=Os02t0814000-01
Chr02	irgsp1_rep	mRNA	34883096	34885449	.	-	.	ID=Os02t0814100-00;Name=Os02t0814100-00;Locus_id=Os02g0814100;Note=Similar to phosphatidylcholine-sterol O-acyltransferase.;Transcript_evidence=BT069971 (DDBJ);ORF_evidence=NP_171897.2 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: O-acyltransferase activity (GO:0008374);InterPro=Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase (IPR003386);TENOR=Os02t0814100-00;KEGG=Os02t0814100-00
Chr02	irgsp1_rep	CDS	34885211	34885449	.	-	0	Parent=Os02t0814100-00
Chr02	irgsp1_rep	CDS	34884923	34885022	.	-	1	Parent=Os02t0814100-00
Chr02	irgsp1_rep	CDS	34884726	34884824	.	-	0	Parent=Os02t0814100-00
Chr02	irgsp1_rep	CDS	34884295	34884341	.	-	0	Parent=Os02t0814100-00
Chr02	irgsp1_rep	CDS	34884172	34884223	.	-	1	Parent=Os02t0814100-00
Chr02	irgsp1_rep	three_prime_UTR	34884152	34884171	.	-	.	Parent=Os02t0814100-00
Chr02	irgsp1_rep	three_prime_UTR	34883821	34883989	.	-	.	Parent=Os02t0814100-00
Chr02	irgsp1_rep	three_prime_UTR	34883444	34883548	.	-	.	Parent=Os02t0814100-00
Chr02	irgsp1_rep	three_prime_UTR	34883268	34883352	.	-	.	Parent=Os02t0814100-00
Chr02	irgsp1_rep	three_prime_UTR	34883096	34883185	.	-	.	Parent=Os02t0814100-00
Chr02	irgsp1_rep	mRNA	34889675	34893873	.	-	.	ID=Os02t0814200-01;Name=Os02t0814200-01;Locus_id=Os02g0814200;Oryzabase Gene Symbol Synonym(s)=Os0053%2C OsGL1-6%2C GL1-6;Oryzabase Gene Name Synonym(s)=Glossy1-homologous gene 6;Note=Similar to CER1-like gene protein (Fragment).;Transcript_evidence=AK068166 (DDBJ%2C Best hit);ORF_evidence=B6UE76 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Fatty acid hydroxylase (IPR006694),Uncharacterised domain Wax2%2C C-terminal (IPR021940);NIAS_FLcDNA=J013134I09;Oryzabase=14982;Expression=AK068166;TENOR=Os02t0814200-01;KEGG=Os02t0814200-01
Chr02	irgsp1_rep	five_prime_UTR	34893778	34893873	.	-	.	Parent=Os02t0814200-01
Chr02	irgsp1_rep	CDS	34893718	34893777	.	-	0	Parent=Os02t0814200-01
Chr02	irgsp1_rep	CDS	34893375	34893601	.	-	0	Parent=Os02t0814200-01
Chr02	irgsp1_rep	CDS	34892639	34893091	.	-	1	Parent=Os02t0814200-01
Chr02	irgsp1_rep	CDS	34892005	34892389	.	-	1	Parent=Os02t0814200-01
Chr02	irgsp1_rep	CDS	34891736	34891843	.	-	0	Parent=Os02t0814200-01
Chr02	irgsp1_rep	CDS	34890951	34891151	.	-	0	Parent=Os02t0814200-01
Chr02	irgsp1_rep	CDS	34890746	34890844	.	-	0	Parent=Os02t0814200-01
Chr02	irgsp1_rep	CDS	34890171	34890344	.	-	0	Parent=Os02t0814200-01
Chr02	irgsp1_rep	CDS	34889889	34890089	.	-	0	Parent=Os02t0814200-01
Chr02	irgsp1_rep	three_prime_UTR	34889675	34889888	.	-	.	Parent=Os02t0814200-01
Chr02	irgsp1_rep	mRNA	34889693	34890833	.	-	.	ID=Os02t0814200-02;Name=Os02t0814200-02;Locus_id=Os02g0814200;Oryzabase Gene Symbol Synonym(s)=Os0053%2C OsGL1-6%2C GL1-6;Oryzabase Gene Name Synonym(s)=Glossy1-homologous gene 6;Note=Similar to CER1.;Transcript_evidence=AK104915 (DDBJ%2C Best hit);ORF_evidence=B6UE76 (UniProt);InterPro=Uncharacterised domain Wax2%2C C-terminal (IPR021940);NIAS_FLcDNA=001-047-E01;Oryzabase=14982;Expression=AK104915;TENOR=Os02t0814200-02;KEGG=Os02t0814200-02
Chr02	irgsp1_rep	five_prime_UTR	34890833	34890833	.	-	.	Parent=Os02t0814200-02
Chr02	irgsp1_rep	CDS	34890746	34890832	.	-	0	Parent=Os02t0814200-02
Chr02	irgsp1_rep	CDS	34890171	34890344	.	-	0	Parent=Os02t0814200-02
Chr02	irgsp1_rep	CDS	34889889	34890089	.	-	0	Parent=Os02t0814200-02
Chr02	irgsp1_rep	three_prime_UTR	34889693	34889888	.	-	.	Parent=Os02t0814200-02
Chr02	irgsp1_rep	mRNA	34900421	34901249	.	+	.	ID=Os02t0814300-01;Name=Os02t0814300-01;Locus_id=Os02g0814300;Note=CytoChrome c%2C monohaem domain containing protein.;Transcript_evidence=AK111376 (DDBJ%2C Best hit);ORF_evidence=B8AET0 (UniProt);GO=Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome c domain (IPR009056);NIAS_FLcDNA=002-182-A12;Expression=AK111376;TENOR=Os02t0814300-01;KEGG=Os02t0814300-01
Chr02	irgsp1_rep	five_prime_UTR	34900421	34900459	.	+	.	Parent=Os02t0814300-01
Chr02	irgsp1_rep	CDS	34900460	34900533	.	+	0	Parent=Os02t0814300-01
Chr02	irgsp1_rep	CDS	34900658	34900877	.	+	1	Parent=Os02t0814300-01
Chr02	irgsp1_rep	CDS	34900969	34901094	.	+	0	Parent=Os02t0814300-01
Chr02	irgsp1_rep	three_prime_UTR	34901095	34901249	.	+	.	Parent=Os02t0814300-01
Chr02	irgsp1_rep	mRNA	34901670	34903148	.	+	.	ID=Os02t0814400-01;Name=Os02t0814400-01;Locus_id=Os02g0814400;Note=CytoChrome c%2C monohaem domain containing protein.;Transcript_evidence=AK120394 (DDBJ%2C Best hit);ORF_evidence=B8AET1 (UniProt);GO=Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome c1 (IPR002326),CytoChrome c domain (IPR009056);NIAS_FLcDNA=J013075E17;Expression=AK120394;TENOR=Os02t0814400-01;KEGG=Os02t0814400-01
Chr02	irgsp1_rep	five_prime_UTR	34901670	34901746	.	+	.	Parent=Os02t0814400-01
Chr02	irgsp1_rep	CDS	34901747	34901811	.	+	0	Parent=Os02t0814400-01
Chr02	irgsp1_rep	CDS	34901918	34902134	.	+	1	Parent=Os02t0814400-01
Chr02	irgsp1_rep	CDS	34902813	34902926	.	+	0	Parent=Os02t0814400-01
Chr02	irgsp1_rep	three_prime_UTR	34902927	34903148	.	+	.	Parent=Os02t0814400-01
Chr02	irgsp1_rep	mRNA	34907672	34910812	.	-	.	ID=Os02t0814600-01;Name=Os02t0814600-01;Locus_id=Os02g0814600;Note=EF-HAND 1 domain containing protein.;Transcript_evidence=AK066382 (DDBJ%2C Best hit);ORF_evidence=Q6K8P1 (UniProt);NIAS_FLcDNA=J013064K05;Expression=AK066382;TENOR=Os02t0814600-01;KEGG=Os02t0814600-01
Chr02	irgsp1_rep	five_prime_UTR	34910798	34910812	.	-	.	Parent=Os02t0814600-01
Chr02	irgsp1_rep	CDS	34910630	34910797	.	-	0	Parent=Os02t0814600-01
Chr02	irgsp1_rep	CDS	34910293	34910391	.	-	0	Parent=Os02t0814600-01
Chr02	irgsp1_rep	CDS	34909776	34910215	.	-	0	Parent=Os02t0814600-01
Chr02	irgsp1_rep	CDS	34909447	34909648	.	-	1	Parent=Os02t0814600-01
Chr02	irgsp1_rep	CDS	34909196	34909363	.	-	0	Parent=Os02t0814600-01
Chr02	irgsp1_rep	CDS	34908363	34908463	.	-	0	Parent=Os02t0814600-01
Chr02	irgsp1_rep	CDS	34908209	34908277	.	-	1	Parent=Os02t0814600-01
Chr02	irgsp1_rep	CDS	34908084	34908127	.	-	1	Parent=Os02t0814600-01
Chr02	irgsp1_rep	CDS	34907881	34907951	.	-	2	Parent=Os02t0814600-01
Chr02	irgsp1_rep	three_prime_UTR	34907672	34907880	.	-	.	Parent=Os02t0814600-01
Chr02	irgsp1_rep	mRNA	34911047	34913456	.	+	.	ID=Os02t0814700-01;Name=Os02t0814700-01;Locus_id=Os02g0814700;Oryzabase Gene Name Synonym(s)=ribosomal protein 117;Note=Similar to Ribosomal Pr 117 (Fragment).;Transcript_evidence=AK121994 (DDBJ%2C Best hit);ORF_evidence=Q7X9K1 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L14b/L23e (IPR000218),Ribosomal protein L14 conserved site (IPR019972),Ribosomal protein L14 domain (IPR023571);NIAS_FLcDNA=J033109P19;Oryzabase=15725;TENOR=Os02t0814700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	34911047	34911047	.	+	.	Parent=Os02t0814700-01
Chr02	irgsp1_rep	CDS	34911048	34911096	.	+	0	Parent=Os02t0814700-01
Chr02	irgsp1_rep	CDS	34911810	34912094	.	+	2	Parent=Os02t0814700-01
Chr02	irgsp1_rep	CDS	34912885	34912926	.	+	2	Parent=Os02t0814700-01
Chr02	irgsp1_rep	CDS	34913137	34913219	.	+	2	Parent=Os02t0814700-01
Chr02	irgsp1_rep	three_prime_UTR	34913220	34913456	.	+	.	Parent=Os02t0814700-01
Chr02	irgsp1_rep	mRNA	34913714	34915475	.	+	.	ID=Os02t0814800-01;Name=Os02t0814800-01;Locus_id=Os02g0814800;Note=Glutathione S-transferase%2C C-terminal-like domain containing protein.;Transcript_evidence=AK109850 (DDBJ%2C Best hit);ORF_evidence=B6U900 (UniProt);InterPro=Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=002-148-F07;Expression=AK109850;TENOR=Os02t0814800-01;KEGG=Os02t0814800-01
Chr02	irgsp1_rep	five_prime_UTR	34913714	34913797	.	+	.	Parent=Os02t0814800-01
Chr02	irgsp1_rep	CDS	34913798	34914534	.	+	0	Parent=Os02t0814800-01
Chr02	irgsp1_rep	CDS	34914804	34915281	.	+	1	Parent=Os02t0814800-01
Chr02	irgsp1_rep	three_prime_UTR	34915282	34915475	.	+	.	Parent=Os02t0814800-01
Chr02	irgsp1_rep	mRNA	34916323	34917986	.	-	.	ID=Os02t0814900-00;Name=Os02t0814900-00;Locus_id=Os02g0814900;Note=Similar to nicotinamide-nucleotide adenylyltransferase 1.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001150381.1 (RefSeq);GO=Biological Process: biosynthetic process (GO:0009058),Biological Process: NAD biosynthetic process (GO:0009435),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=Cytidylyltransferase (IPR004820),Probable nicotinate-nucleotide adenylyltransferase (IPR005248),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);TENOR=Os02t0814900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	34917733	34917986	.	-	0	Parent=Os02t0814900-00
Chr02	irgsp1_rep	CDS	34917560	34917642	.	-	1	Parent=Os02t0814900-00
Chr02	irgsp1_rep	CDS	34917349	34917434	.	-	2	Parent=Os02t0814900-00
Chr02	irgsp1_rep	CDS	34916981	34917065	.	-	0	Parent=Os02t0814900-00
Chr02	irgsp1_rep	CDS	34916761	34916840	.	-	2	Parent=Os02t0814900-00
Chr02	irgsp1_rep	CDS	34916526	34916627	.	-	0	Parent=Os02t0814900-00
Chr02	irgsp1_rep	CDS	34916323	34916343	.	-	0	Parent=Os02t0814900-00
Chr02	irgsp1_rep	mRNA	34918065	34919918	.	+	.	ID=Os02t0815000-00;Name=Os02t0815000-00;Locus_id=Os02g0815000;CGSNL Gene Symbol=RPL37;CGSNL Gene Name=RIBOSOMAL PROTEIN L37;Oryzabase Gene Symbol Synonym(s)=OsRPL37;Oryzabase Gene Name Synonym(s)=ribosomal protein  L37%2C ribosomal protein large subunit 37;Note=Similar to 60S ribosomal protein L37 (G1.16).;Transcript_evidence=FP097004 (DDBJ);ORF_evidence=A2XAY8 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L37e (IPR001569),Ribosomal protein L37ae/L37e%2C N-terminal (IPR011331),Ribosomal protein%2C zinc-binding domain (IPR011332),Ribosomal protein L37e%2C conserved site (IPR018267);Oryzabase=22206;TENOR=Os02t0815000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	34918065	34918205	.	+	0	Parent=Os02t0815000-00
Chr02	irgsp1_rep	CDS	34918316	34918451	.	+	0	Parent=Os02t0815000-00
Chr02	irgsp1_rep	CDS	34919301	34919402	.	+	2	Parent=Os02t0815000-00
Chr02	irgsp1_rep	CDS	34919660	34919706	.	+	2	Parent=Os02t0815000-00
Chr02	irgsp1_rep	three_prime_UTR	34919707	34919918	.	+	.	Parent=Os02t0815000-00
Chr02	irgsp1_rep	mRNA	34920542	34921736	.	+	.	ID=Os02t0815100-01;Name=Os02t0815100-01;Locus_id=Os02g0815100;Note=C2 membrane targeting protein domain containing protein.;Transcript_evidence=AK108780 (DDBJ%2C Best hit);ORF_evidence=B9F471 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=002-151-A04;Expression=AK108780;TENOR=Os02t0815100-01;KEGG=Os02t0815100-01
Chr02	irgsp1_rep	five_prime_UTR	34920542	34920568	.	+	.	Parent=Os02t0815100-01
Chr02	irgsp1_rep	CDS	34920569	34921426	.	+	0	Parent=Os02t0815100-01
Chr02	irgsp1_rep	three_prime_UTR	34921427	34921736	.	+	.	Parent=Os02t0815100-01
Chr02	irgsp1_rep	mRNA	34922504	34924759	.	+	.	ID=Os02t0815200-01;Name=Os02t0815200-01;Locus_id=Os02g0815200;Note=Similar to 29 kDa ribonucleoprotein%2C chloroplast precursor (RNA-binding protein cp29).;Transcript_evidence=AK067252 (DDBJ%2C Best hit),AK104489 (DDBJ%2C Best hit);ORF_evidence=A2XAZ0 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013098L06,006-302-B08;TENOR=Os02t0815200-01
Chr02	irgsp1_rep	five_prime_UTR	34922504	34922544	.	+	.	Parent=Os02t0815200-01
Chr02	irgsp1_rep	CDS	34922545	34923069	.	+	0	Parent=Os02t0815200-01
Chr02	irgsp1_rep	CDS	34923559	34923660	.	+	0	Parent=Os02t0815200-01
Chr02	irgsp1_rep	CDS	34923756	34924028	.	+	0	Parent=Os02t0815200-01
Chr02	irgsp1_rep	CDS	34924370	34924420	.	+	0	Parent=Os02t0815200-01
Chr02	irgsp1_rep	three_prime_UTR	34924421	34924759	.	+	.	Parent=Os02t0815200-01
Chr02	irgsp1_rep	mRNA	34925371	34926093	.	+	.	ID=Os02t0815300-01;Name=Os02t0815300-01;Locus_id=Os02g0815300;Note=Hypothetical protein.;Transcript_evidence=AK061607 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=001-030-G03;TENOR=Os02t0815300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	34925371	34925371	.	+	.	Parent=Os02t0815300-01
Chr02	irgsp1_rep	CDS	34925372	34925926	.	+	0	Parent=Os02t0815300-01
Chr02	irgsp1_rep	three_prime_UTR	34925927	34926093	.	+	.	Parent=Os02t0815300-01
Chr02	irgsp1_rep	mRNA	34926649	34929340	.	+	.	ID=Os02t0815400-01;Name=Os02t0815400-01;Locus_id=Os02g0815400;Note=Similar to Tfm5 protein.;Transcript_evidence=AK061270 (DDBJ%2C Best hit);ORF_evidence=B8AET5 (UniProt);NIAS_FLcDNA=006-212-D07;Expression=AK061270;TENOR=Os02t0815400-01;KEGG=Os02t0815400-01
Chr02	irgsp1_rep	five_prime_UTR	34926649	34926677	.	+	.	Parent=Os02t0815400-01
Chr02	irgsp1_rep	CDS	34926678	34926908	.	+	0	Parent=Os02t0815400-01
Chr02	irgsp1_rep	CDS	34926982	34927041	.	+	0	Parent=Os02t0815400-01
Chr02	irgsp1_rep	CDS	34927238	34927285	.	+	0	Parent=Os02t0815400-01
Chr02	irgsp1_rep	CDS	34927407	34927537	.	+	0	Parent=Os02t0815400-01
Chr02	irgsp1_rep	CDS	34927637	34927715	.	+	1	Parent=Os02t0815400-01
Chr02	irgsp1_rep	CDS	34928140	34928235	.	+	0	Parent=Os02t0815400-01
Chr02	irgsp1_rep	CDS	34928315	34928385	.	+	0	Parent=Os02t0815400-01
Chr02	irgsp1_rep	CDS	34928867	34928957	.	+	1	Parent=Os02t0815400-01
Chr02	irgsp1_rep	CDS	34929054	34929170	.	+	0	Parent=Os02t0815400-01
Chr02	irgsp1_rep	three_prime_UTR	34929171	34929340	.	+	.	Parent=Os02t0815400-01
Chr02	irgsp1_rep	mRNA	34930323	34934022	.	+	.	ID=Os02t0815500-01;Name=Os02t0815500-01;Locus_id=Os02g0815500;Oryzabase Gene Symbol Synonym(s)=OsGSNOR%2C GSNOR%2C GSNOR1%2C OsGSNOR1;Oryzabase Gene Name Synonym(s)=S-nitrosoglutathione reductase%2C S-nitrosoglutathione reductase 1;Note=Alcohol dehydrogenase class III (EC 1.1.1.1) (Glutathione-dependent formaldehyde dehydrogenase) (EC 1.2.1.1) (FDH) (FALDH) (GSH-FDH).;Transcript_evidence=AK099733 (DDBJ%2C Best hit);ORF_evidence=A2XAZ3 (UniProt);GO=Biological Process: ethanol oxidation (GO:0006069),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: S-(hydroxymethyl)glutathione dehydrogenase activity (GO:0051903);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),Alcohol dehydrogenase%2C zinc-type%2C conserved site (IPR002328),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase (IPR014183),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013089P19;Oryzabase=9917;Expression=AK099733;TENOR=Os02t0815500-01;KEGG=Os02t0815500-01 (EC:1.1.1.1%2C EC:1.1.1.284)
Chr02	irgsp1_rep	five_prime_UTR	34930323	34930405	.	+	.	Parent=Os02t0815500-01
Chr02	irgsp1_rep	CDS	34930406	34930445	.	+	0	Parent=Os02t0815500-01
Chr02	irgsp1_rep	CDS	34930593	34930729	.	+	2	Parent=Os02t0815500-01
Chr02	irgsp1_rep	CDS	34931361	34931407	.	+	0	Parent=Os02t0815500-01
Chr02	irgsp1_rep	CDS	34931497	34931822	.	+	1	Parent=Os02t0815500-01
Chr02	irgsp1_rep	CDS	34932147	34932229	.	+	2	Parent=Os02t0815500-01
Chr02	irgsp1_rep	CDS	34932308	34932383	.	+	0	Parent=Os02t0815500-01
Chr02	irgsp1_rep	CDS	34933006	34933163	.	+	2	Parent=Os02t0815500-01
Chr02	irgsp1_rep	CDS	34933486	34933647	.	+	0	Parent=Os02t0815500-01
Chr02	irgsp1_rep	CDS	34933742	34933858	.	+	0	Parent=Os02t0815500-01
Chr02	irgsp1_rep	three_prime_UTR	34933859	34934022	.	+	.	Parent=Os02t0815500-01
Chr02	irgsp1_rep	mRNA	34934560	34936977	.	-	.	ID=Os02t0815600-01;Name=Os02t0815600-01;Locus_id=Os02g0815600;Note=Diphthamide synthesis%2C DHP1 domain containing protein.;Transcript_evidence=AK059429 (DDBJ%2C Best hit),AK099042 (DDBJ%2C Best hit);ORF_evidence=NP_001151030.1 (RefSeq);GO=Biological Process: peptidyl-diphthamide biosynthetic process from peptidyl-histidine (GO:0017183),Cellular Component: cytoplasm (GO:0005737);InterPro=Diphthamide synthesis%2C DPH1/DHP2 (IPR002728),Diphthamide synthesis%2C DHP1 (IPR016435);NIAS_FLcDNA=001-027-F01,J013135E01;TENOR=Os02t0815600-01
Chr02	irgsp1_rep	five_prime_UTR	34936920	34936977	.	-	.	Parent=Os02t0815600-01
Chr02	irgsp1_rep	CDS	34935533	34936919	.	-	0	Parent=Os02t0815600-01
Chr02	irgsp1_rep	CDS	34934773	34934810	.	-	2	Parent=Os02t0815600-01
Chr02	irgsp1_rep	three_prime_UTR	34934560	34934772	.	-	.	Parent=Os02t0815600-01
Chr02	irgsp1_rep	mRNA	34937314	34941399	.	+	.	ID=Os02t0815700-01;Name=Os02t0815700-01;Locus_id=Os02g0815700;Oryzabase Gene Symbol Synonym(s)=OsCttP2%2C CTTP2;Oryzabase Gene Name Synonym(s)=C-terminal processing peptidase 2%2C C-TERMINAL PROCESSING PEPTIDASE 2;Note=Similar to D1 protease (Fragment).;Transcript_evidence=AK065514 (DDBJ%2C Best hit);ORF_evidence=Q8S3I9 (UniProt);NIAS_FLcDNA=J013031E23;Oryzabase=20055;TENOR=Os02t0815700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	34937314	34937381	.	+	.	Parent=Os02t0815700-01
Chr02	irgsp1_rep	CDS	34937382	34937486	.	+	0	Parent=Os02t0815700-01
Chr02	irgsp1_rep	CDS	34938060	34938357	.	+	0	Parent=Os02t0815700-01
Chr02	irgsp1_rep	CDS	34938457	34938609	.	+	2	Parent=Os02t0815700-01
Chr02	irgsp1_rep	CDS	34939099	34939181	.	+	2	Parent=Os02t0815700-01
Chr02	irgsp1_rep	CDS	34939269	34939316	.	+	0	Parent=Os02t0815700-01
Chr02	irgsp1_rep	three_prime_UTR	34939317	34939481	.	+	.	Parent=Os02t0815700-01
Chr02	irgsp1_rep	three_prime_UTR	34939637	34940084	.	+	.	Parent=Os02t0815700-01
Chr02	irgsp1_rep	three_prime_UTR	34940159	34940200	.	+	.	Parent=Os02t0815700-01
Chr02	irgsp1_rep	three_prime_UTR	34940316	34940424	.	+	.	Parent=Os02t0815700-01
Chr02	irgsp1_rep	three_prime_UTR	34940609	34940706	.	+	.	Parent=Os02t0815700-01
Chr02	irgsp1_rep	three_prime_UTR	34940804	34940897	.	+	.	Parent=Os02t0815700-01
Chr02	irgsp1_rep	three_prime_UTR	34941024	34941399	.	+	.	Parent=Os02t0815700-01
Chr02	irgsp1_rep	mRNA	34941327	34944075	.	-	.	ID=Os02t0815800-01;Name=Os02t0815800-01;Locus_id=Os02g0815800;Note=S1%2C RNA binding domain containing protein.;Transcript_evidence=AK106810 (DDBJ%2C Best hit);ORF_evidence=NP_001148354.1 (RefSeq);InterPro=Exosome complex%2C component CSL4 (IPR019495),RNA-binding domain%2C S1 (IPR022967);NIAS_FLcDNA=002-116-C09;Expression=AK106810;TENOR=Os02t0815800-01;KEGG=Os02t0815800-01
Chr02	irgsp1_rep	five_prime_UTR	34944011	34944075	.	-	.	Parent=Os02t0815800-01
Chr02	irgsp1_rep	CDS	34943837	34944010	.	-	0	Parent=Os02t0815800-01
Chr02	irgsp1_rep	CDS	34943672	34943746	.	-	0	Parent=Os02t0815800-01
Chr02	irgsp1_rep	CDS	34942790	34942878	.	-	0	Parent=Os02t0815800-01
Chr02	irgsp1_rep	CDS	34942520	34942604	.	-	1	Parent=Os02t0815800-01
Chr02	irgsp1_rep	CDS	34942246	34942327	.	-	0	Parent=Os02t0815800-01
Chr02	irgsp1_rep	CDS	34942015	34942103	.	-	2	Parent=Os02t0815800-01
Chr02	irgsp1_rep	three_prime_UTR	34941989	34942014	.	-	.	Parent=Os02t0815800-01
Chr02	irgsp1_rep	three_prime_UTR	34941327	34941646	.	-	.	Parent=Os02t0815800-01
Chr02	irgsp1_rep	mRNA	34945082	34952009	.	-	.	ID=Os02t0815900-01;Name=Os02t0815900-01;Locus_id=Os02g0815900;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK102246 (DDBJ%2C Best hit);ORF_evidence=NP_849998.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033088F01;Expression=AK102246;TENOR=Os02t0815900-01;KEGG=Os02t0815900-01
Chr02	irgsp1_rep	five_prime_UTR	34951526	34952009	.	-	.	Parent=Os02t0815900-01
Chr02	irgsp1_rep	CDS	34951459	34951525	.	-	0	Parent=Os02t0815900-01
Chr02	irgsp1_rep	CDS	34949620	34949733	.	-	2	Parent=Os02t0815900-01
Chr02	irgsp1_rep	CDS	34949438	34949521	.	-	2	Parent=Os02t0815900-01
Chr02	irgsp1_rep	CDS	34948388	34948756	.	-	2	Parent=Os02t0815900-01
Chr02	irgsp1_rep	CDS	34948022	34948288	.	-	2	Parent=Os02t0815900-01
Chr02	irgsp1_rep	CDS	34946854	34947243	.	-	2	Parent=Os02t0815900-01
Chr02	irgsp1_rep	CDS	34946537	34946777	.	-	2	Parent=Os02t0815900-01
Chr02	irgsp1_rep	CDS	34945478	34946165	.	-	1	Parent=Os02t0815900-01
Chr02	irgsp1_rep	three_prime_UTR	34945082	34945477	.	-	.	Parent=Os02t0815900-01
Chr02	irgsp1_rep	mRNA	34945082	34952003	.	-	.	ID=Os02t0815900-02;Name=Os02t0815900-02;Locus_id=Os02g0815900;Note=Similar to ALE2 (Abnormal Leaf Shape 2)%3B kinase.;Transcript_evidence=AK069234 (DDBJ%2C Best hit);ORF_evidence=NP_849998.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023010G02;TENOR=Os02t0815900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	34951921	34952003	.	-	.	Parent=Os02t0815900-02
Chr02	irgsp1_rep	five_prime_UTR	34949639	34949733	.	-	.	Parent=Os02t0815900-02
Chr02	irgsp1_rep	CDS	34949620	34949638	.	-	0	Parent=Os02t0815900-02
Chr02	irgsp1_rep	CDS	34949438	34949521	.	-	2	Parent=Os02t0815900-02
Chr02	irgsp1_rep	CDS	34948388	34948756	.	-	2	Parent=Os02t0815900-02
Chr02	irgsp1_rep	CDS	34948022	34948288	.	-	2	Parent=Os02t0815900-02
Chr02	irgsp1_rep	CDS	34946854	34947243	.	-	2	Parent=Os02t0815900-02
Chr02	irgsp1_rep	CDS	34946537	34946777	.	-	2	Parent=Os02t0815900-02
Chr02	irgsp1_rep	CDS	34945478	34946165	.	-	1	Parent=Os02t0815900-02
Chr02	irgsp1_rep	three_prime_UTR	34945082	34945477	.	-	.	Parent=Os02t0815900-02
Chr02	irgsp1_rep	mRNA	34945183	34951677	.	+	.	ID=Os02t0815950-00;Name=Os02t0815950-00;Locus_id=Os02g0815950;Note=Hypothetical protein.;Transcript_evidence=tplb0042j09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0815950-00
Chr02	irgsp1_rep	five_prime_UTR	34945183	34946167	.	+	.	Parent=Os02t0815950-00
Chr02	irgsp1_rep	five_prime_UTR	34946544	34946775	.	+	.	Parent=Os02t0815950-00
Chr02	irgsp1_rep	five_prime_UTR	34946852	34947230	.	+	.	Parent=Os02t0815950-00
Chr02	irgsp1_rep	five_prime_UTR	34948008	34948254	.	+	.	Parent=Os02t0815950-00
Chr02	irgsp1_rep	five_prime_UTR	34948363	34948742	.	+	.	Parent=Os02t0815950-00
Chr02	irgsp1_rep	five_prime_UTR	34949421	34949507	.	+	.	Parent=Os02t0815950-00
Chr02	irgsp1_rep	five_prime_UTR	34949612	34949704	.	+	.	Parent=Os02t0815950-00
Chr02	irgsp1_rep	CDS	34949705	34949724	.	+	0	Parent=Os02t0815950-00
Chr02	irgsp1_rep	CDS	34951429	34951677	.	+	1	Parent=Os02t0815950-00
Chr02	irgsp1_rep	mRNA	34958012	34961607	.	+	.	ID=Os02t0816000-01;Name=Os02t0816000-01;Locus_id=Os02g0816000;Note=C2 domain containing protein.;Transcript_evidence=AK241702 (DDBJ%2C Best hit);ORF_evidence=NP_171911.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),Phosphoribosyltransferase C-terminal (IPR013583),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=J065196G22;TENOR=Os02t0816000-01;KEGG=Os02t0816000-01
Chr02	irgsp1_rep	five_prime_UTR	34958012	34958320	.	+	.	Parent=Os02t0816000-01
Chr02	irgsp1_rep	CDS	34958321	34961320	.	+	0	Parent=Os02t0816000-01
Chr02	irgsp1_rep	three_prime_UTR	34961321	34961607	.	+	.	Parent=Os02t0816000-01
Chr02	irgsp1_rep	mRNA	34963656	34966602	.	-	.	ID=Os02t0816100-01;Name=Os02t0816100-01;Locus_id=Os02g0816100;Note=HAD-superfamily hydrolase%2C subfamily IA%2C variant 2 protein.;Transcript_evidence=AK058331 (DDBJ%2C Best hit);ORF_evidence=B6UHU7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphoglycolate phosphatase activity (GO:0008967);InterPro=Haloacid dehalogenase-like hydrolase (IPR005834),HAD-superfamily hydrolase%2C subfamily IA%2C variant 1 (IPR006439),HAD-like domain (IPR023214);NIAS_FLcDNA=001-014-C08;Expression=AK058331;TENOR=Os02t0816100-01;KEGG=Os02t0816100-01
Chr02	irgsp1_rep	five_prime_UTR	34966533	34966602	.	-	.	Parent=Os02t0816100-01
Chr02	irgsp1_rep	CDS	34966181	34966532	.	-	0	Parent=Os02t0816100-01
Chr02	irgsp1_rep	CDS	34966022	34966064	.	-	2	Parent=Os02t0816100-01
Chr02	irgsp1_rep	CDS	34964925	34964985	.	-	1	Parent=Os02t0816100-01
Chr02	irgsp1_rep	CDS	34964463	34964597	.	-	0	Parent=Os02t0816100-01
Chr02	irgsp1_rep	CDS	34964013	34964198	.	-	0	Parent=Os02t0816100-01
Chr02	irgsp1_rep	three_prime_UTR	34963656	34964012	.	-	.	Parent=Os02t0816100-01
Chr02	irgsp1_rep	mRNA	34963635	34966559	.	-	.	ID=Os02t0816100-02;Name=Os02t0816100-02;Locus_id=Os02g0816100;Note=HAD-superfamily hydrolase%2C subfamily IA%2C variant 2 protein.;Transcript_evidence=AK060021 (DDBJ%2C Best hit);ORF_evidence=B6UHU7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphoglycolate phosphatase activity (GO:0008967);InterPro=Haloacid dehalogenase-like hydrolase (IPR005834),HAD-superfamily hydrolase%2C subfamily IA%2C variant 1 (IPR006439),HAD-like domain (IPR023214);NIAS_FLcDNA=006-302-H01;TENOR=Os02t0816100-02
Chr02	irgsp1_rep	five_prime_UTR	34966533	34966559	.	-	.	Parent=Os02t0816100-02
Chr02	irgsp1_rep	CDS	34966181	34966532	.	-	0	Parent=Os02t0816100-02
Chr02	irgsp1_rep	CDS	34966022	34966064	.	-	2	Parent=Os02t0816100-02
Chr02	irgsp1_rep	CDS	34964925	34964985	.	-	1	Parent=Os02t0816100-02
Chr02	irgsp1_rep	CDS	34964463	34964597	.	-	0	Parent=Os02t0816100-02
Chr02	irgsp1_rep	CDS	34964013	34964198	.	-	0	Parent=Os02t0816100-02
Chr02	irgsp1_rep	three_prime_UTR	34963635	34964012	.	-	.	Parent=Os02t0816100-02
Chr02	irgsp1_rep	mRNA	34967597	34969261	.	-	.	ID=Os02t0816200-02;Name=Os02t0816200-02;Locus_id=Os02g0816200;CGSNL Gene Symbol=GELP45;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 45;Oryzabase Gene Symbol Synonym(s)=OsGELP45%2C OsGELP45a%2C OsGELP45b;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 45;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK060243 (DDBJ%2C Best hit),AK099251 (DDBJ%2C Best hit),AK106084 (DDBJ%2C Best hit);ORF_evidence=NP_001151440.1 (RefSeq);NIAS_FLcDNA=001-003-G01,J013154O11,001-207-B01;Oryzabase=10995;Expression=AK060243;TENOR=Os02t0816200-02;KEGG=Os02t0816200-02
Chr02	irgsp1_rep	five_prime_UTR	34969184	34969261	.	-	.	Parent=Os02t0816200-02
Chr02	irgsp1_rep	CDS	34968943	34969183	.	-	0	Parent=Os02t0816200-02
Chr02	irgsp1_rep	CDS	34967967	34968835	.	-	2	Parent=Os02t0816200-02
Chr02	irgsp1_rep	three_prime_UTR	34967597	34967966	.	-	.	Parent=Os02t0816200-02
Chr02	irgsp1_rep	mRNA	34982175	34989857	.	+	.	ID=Os02t0816300-01;Name=Os02t0816300-01;Locus_id=Os02g0816300;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=AK071879 (DDBJ%2C Best hit);ORF_evidence=Q6K6B1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),CLASP N-terminal domain (IPR024395);NIAS_FLcDNA=J013042C23;Expression=AK071879;TENOR=Os02t0816300-01;KEGG=Os02t0816300-01
Chr02	irgsp1_rep	five_prime_UTR	34982175	34982176	.	+	.	Parent=Os02t0816300-01
Chr02	irgsp1_rep	CDS	34982177	34982342	.	+	0	Parent=Os02t0816300-01
Chr02	irgsp1_rep	CDS	34983150	34983311	.	+	2	Parent=Os02t0816300-01
Chr02	irgsp1_rep	CDS	34983415	34983512	.	+	2	Parent=Os02t0816300-01
Chr02	irgsp1_rep	CDS	34983752	34983826	.	+	0	Parent=Os02t0816300-01
Chr02	irgsp1_rep	CDS	34983920	34983988	.	+	0	Parent=Os02t0816300-01
Chr02	irgsp1_rep	CDS	34984059	34984144	.	+	0	Parent=Os02t0816300-01
Chr02	irgsp1_rep	CDS	34984217	34984334	.	+	1	Parent=Os02t0816300-01
Chr02	irgsp1_rep	CDS	34984908	34985006	.	+	0	Parent=Os02t0816300-01
Chr02	irgsp1_rep	CDS	34985082	34985409	.	+	0	Parent=Os02t0816300-01
Chr02	irgsp1_rep	CDS	34985502	34987189	.	+	2	Parent=Os02t0816300-01
Chr02	irgsp1_rep	CDS	34987329	34987388	.	+	0	Parent=Os02t0816300-01
Chr02	irgsp1_rep	CDS	34987600	34987704	.	+	0	Parent=Os02t0816300-01
Chr02	irgsp1_rep	CDS	34987805	34987879	.	+	0	Parent=Os02t0816300-01
Chr02	irgsp1_rep	CDS	34987971	34988039	.	+	0	Parent=Os02t0816300-01
Chr02	irgsp1_rep	CDS	34988121	34988189	.	+	0	Parent=Os02t0816300-01
Chr02	irgsp1_rep	CDS	34988501	34988602	.	+	0	Parent=Os02t0816300-01
Chr02	irgsp1_rep	CDS	34989345	34989494	.	+	0	Parent=Os02t0816300-01
Chr02	irgsp1_rep	three_prime_UTR	34989495	34989857	.	+	.	Parent=Os02t0816300-01
Chr02	irgsp1_rep	mRNA	34986919	34989869	.	+	.	ID=Os02t0816300-02;Name=Os02t0816300-02;Locus_id=Os02g0816300;Note=Hypothetical conserved gene.;Transcript_evidence=AK059078 (DDBJ%2C Best hit);ORF_evidence=Q6K6B1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=001-022-A08;Expression=AK059078;TENOR=Os02t0816300-02;KEGG=Os02t0816300-02
Chr02	irgsp1_rep	five_prime_UTR	34986919	34986919	.	+	.	Parent=Os02t0816300-02
Chr02	irgsp1_rep	CDS	34986920	34987189	.	+	0	Parent=Os02t0816300-02
Chr02	irgsp1_rep	CDS	34987329	34987388	.	+	0	Parent=Os02t0816300-02
Chr02	irgsp1_rep	CDS	34987600	34987704	.	+	0	Parent=Os02t0816300-02
Chr02	irgsp1_rep	CDS	34987805	34987879	.	+	0	Parent=Os02t0816300-02
Chr02	irgsp1_rep	CDS	34987971	34988039	.	+	0	Parent=Os02t0816300-02
Chr02	irgsp1_rep	CDS	34988121	34988189	.	+	0	Parent=Os02t0816300-02
Chr02	irgsp1_rep	CDS	34988501	34988602	.	+	0	Parent=Os02t0816300-02
Chr02	irgsp1_rep	CDS	34989345	34989494	.	+	0	Parent=Os02t0816300-02
Chr02	irgsp1_rep	three_prime_UTR	34989495	34989869	.	+	.	Parent=Os02t0816300-02
Chr02	irgsp1_rep	mRNA	34986950	34989864	.	+	.	ID=Os02t0816300-03;Name=Os02t0816300-03;Locus_id=Os02g0816300;Note=Hypothetical conserved gene.;Transcript_evidence=AK104549 (DDBJ%2C Best hit);ORF_evidence=Q6K6B1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=006-305-C12;Expression=AK104549;TENOR=Os02t0816300-03;KEGG=Os02t0816300-03
Chr02	irgsp1_rep	CDS	34986950	34987189	.	+	0	Parent=Os02t0816300-03
Chr02	irgsp1_rep	CDS	34987329	34987388	.	+	0	Parent=Os02t0816300-03
Chr02	irgsp1_rep	CDS	34987600	34987704	.	+	0	Parent=Os02t0816300-03
Chr02	irgsp1_rep	CDS	34987805	34987879	.	+	0	Parent=Os02t0816300-03
Chr02	irgsp1_rep	CDS	34987971	34988039	.	+	0	Parent=Os02t0816300-03
Chr02	irgsp1_rep	CDS	34988121	34988189	.	+	0	Parent=Os02t0816300-03
Chr02	irgsp1_rep	CDS	34988501	34988602	.	+	0	Parent=Os02t0816300-03
Chr02	irgsp1_rep	CDS	34989345	34989494	.	+	0	Parent=Os02t0816300-03
Chr02	irgsp1_rep	three_prime_UTR	34989495	34989864	.	+	.	Parent=Os02t0816300-03
Chr02	irgsp1_rep	mRNA	34987593	34988604	.	-	.	ID=Os02t0816350-00;Name=Os02t0816350-00;Locus_id=Os02g0816350;Note=Non-protein coding transcript.;Transcript_evidence=BT018460 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0816350-00
Chr02	irgsp1_rep	exon	34988209	34988604	.	-	.	Parent=Os02t0816350-00
Chr02	irgsp1_rep	exon	34987593	34988127	.	-	.	Parent=Os02t0816350-00
Chr02	irgsp1_rep	mRNA	34991250	34996461	.	+	.	ID=Os02t0816400-01;Name=Os02t0816400-01;Locus_id=Os02g0816400;Note=Protein of unknown function DUF3741 domain containing protein.;Transcript_evidence=AK101167 (DDBJ%2C Best hit);ORF_evidence=B8AEU2 (UniProt);InterPro=Protein of unknown function DUF3741 (IPR022212);NIAS_FLcDNA=J033028I16;Expression=AK101167;TENOR=Os02t0816400-01;KEGG=Os02t0816400-01
Chr02	irgsp1_rep	five_prime_UTR	34991250	34991644	.	+	.	Parent=Os02t0816400-01
Chr02	irgsp1_rep	five_prime_UTR	34993069	34993077	.	+	.	Parent=Os02t0816400-01
Chr02	irgsp1_rep	CDS	34993078	34993231	.	+	0	Parent=Os02t0816400-01
Chr02	irgsp1_rep	CDS	34993325	34993404	.	+	2	Parent=Os02t0816400-01
Chr02	irgsp1_rep	CDS	34993515	34995287	.	+	0	Parent=Os02t0816400-01
Chr02	irgsp1_rep	CDS	34995422	34995575	.	+	0	Parent=Os02t0816400-01
Chr02	irgsp1_rep	CDS	34995665	34996308	.	+	2	Parent=Os02t0816400-01
Chr02	irgsp1_rep	three_prime_UTR	34996309	34996461	.	+	.	Parent=Os02t0816400-01
Chr02	irgsp1_rep	mRNA	34991838	34996445	.	+	.	ID=Os02t0816400-02;Name=Os02t0816400-02;Locus_id=Os02g0816400;Note=Protein of unknown function DUF3741 domain containing protein.;Transcript_evidence=AK100544 (DDBJ%2C Best hit);ORF_evidence=B8AEU2 (UniProt);InterPro=Protein of unknown function DUF3741 (IPR022212);NIAS_FLcDNA=J023102M09;Expression=AK100544;TENOR=Os02t0816400-02;KEGG=Os02t0816400-02
Chr02	irgsp1_rep	five_prime_UTR	34991838	34992462	.	+	.	Parent=Os02t0816400-02
Chr02	irgsp1_rep	five_prime_UTR	34993069	34993077	.	+	.	Parent=Os02t0816400-02
Chr02	irgsp1_rep	CDS	34993078	34993231	.	+	0	Parent=Os02t0816400-02
Chr02	irgsp1_rep	CDS	34993325	34993404	.	+	2	Parent=Os02t0816400-02
Chr02	irgsp1_rep	CDS	34993515	34995287	.	+	0	Parent=Os02t0816400-02
Chr02	irgsp1_rep	CDS	34995422	34995575	.	+	0	Parent=Os02t0816400-02
Chr02	irgsp1_rep	CDS	34995665	34996308	.	+	2	Parent=Os02t0816400-02
Chr02	irgsp1_rep	three_prime_UTR	34996309	34996445	.	+	.	Parent=Os02t0816400-02
Chr02	irgsp1_rep	mRNA	35002742	35004794	.	+	.	ID=Os02t0816500-01;Name=Os02t0816500-01;Locus_id=Os02g0816500;Note=Tubulin binding cofactor A family protein.;Transcript_evidence=AK120302 (DDBJ%2C Best hit);ORF_evidence=A5CFZ2 (UniProt);GO=Biological Process: tubulin complex assembly (GO:0007021),Cellular Component: microtubule (GO:0005874),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Tubulin binding cofactor A (IPR004226);NIAS_FLcDNA=J013052I03;Expression=AK120302;TENOR=Os02t0816500-01;KEGG=Os02t0816500-01
Chr02	irgsp1_rep	five_prime_UTR	35002742	35002876	.	+	.	Parent=Os02t0816500-01
Chr02	irgsp1_rep	five_prime_UTR	35002983	35003001	.	+	.	Parent=Os02t0816500-01
Chr02	irgsp1_rep	CDS	35003002	35003154	.	+	0	Parent=Os02t0816500-01
Chr02	irgsp1_rep	CDS	35004326	35004445	.	+	0	Parent=Os02t0816500-01
Chr02	irgsp1_rep	three_prime_UTR	35004446	35004794	.	+	.	Parent=Os02t0816500-01
Chr02	irgsp1_rep	mRNA	35004914	35006549	.	-	.	ID=Os02t0816600-01;Name=Os02t0816600-01;Locus_id=Os02g0816600;Note=Similar to ABC(yeast) homolog1.;Transcript_evidence=AK058624 (DDBJ%2C Best hit);ORF_evidence=NP_001159312.1 (RefSeq);NIAS_FLcDNA=001-018-C01;Expression=AK058624;TENOR=Os02t0816600-01;KEGG=Os02t0816600-01
Chr02	irgsp1_rep	CDS	35006352	35006549	.	-	0	Parent=Os02t0816600-01
Chr02	irgsp1_rep	CDS	35005856	35006182	.	-	0	Parent=Os02t0816600-01
Chr02	irgsp1_rep	CDS	35005509	35005724	.	-	0	Parent=Os02t0816600-01
Chr02	irgsp1_rep	CDS	35005241	35005375	.	-	0	Parent=Os02t0816600-01
Chr02	irgsp1_rep	three_prime_UTR	35004914	35005240	.	-	.	Parent=Os02t0816600-01
Chr02	irgsp1_rep	mRNA	35005079	35006406	.	-	.	ID=Os02t0816600-02;Name=Os02t0816600-02;Locus_id=Os02g0816600;Note=Similar to ABC1 family protein.;Transcript_evidence=AK071389 (DDBJ%2C Best hit);ORF_evidence=NP_001159312.1 (RefSeq);NIAS_FLcDNA=J023091P22;Expression=AK071389;TENOR=Os02t0816600-02;KEGG=Os02t0816600-02
Chr02	irgsp1_rep	five_prime_UTR	35006406	35006406	.	-	.	Parent=Os02t0816600-02
Chr02	irgsp1_rep	CDS	35006352	35006405	.	-	0	Parent=Os02t0816600-02
Chr02	irgsp1_rep	CDS	35005856	35006182	.	-	0	Parent=Os02t0816600-02
Chr02	irgsp1_rep	CDS	35005509	35005724	.	-	0	Parent=Os02t0816600-02
Chr02	irgsp1_rep	CDS	35005241	35005375	.	-	0	Parent=Os02t0816600-02
Chr02	irgsp1_rep	three_prime_UTR	35005079	35005240	.	-	.	Parent=Os02t0816600-02
Chr02	irgsp1_rep	mRNA	35011393	35013385	.	-	.	ID=Os02t0816700-01;Name=Os02t0816700-01;Locus_id=Os02g0816700;Note=Conserved hypothetical protein.;Transcript_evidence=AK059572 (DDBJ%2C Best hit);ORF_evidence=A2XB09 (UniProt);NIAS_FLcDNA=001-030-A03;Expression=AK059572;TENOR=Os02t0816700-01;KEGG=Os02t0816700-01
Chr02	irgsp1_rep	five_prime_UTR	35013309	35013385	.	-	.	Parent=Os02t0816700-01
Chr02	irgsp1_rep	CDS	35013140	35013308	.	-	0	Parent=Os02t0816700-01
Chr02	irgsp1_rep	CDS	35012598	35012668	.	-	2	Parent=Os02t0816700-01
Chr02	irgsp1_rep	CDS	35012359	35012494	.	-	0	Parent=Os02t0816700-01
Chr02	irgsp1_rep	CDS	35011593	35011684	.	-	2	Parent=Os02t0816700-01
Chr02	irgsp1_rep	three_prime_UTR	35011393	35011592	.	-	.	Parent=Os02t0816700-01
Chr02	irgsp1_rep	mRNA	35013576	35017647	.	+	.	ID=Os02t0816800-01;Name=Os02t0816800-01;Locus_id=Os02g0816800;RAP-DB Gene Symbol Synonym(s)=OsNDUFA9%2C FLO13;RAP-DB Gene Name Synonym(s)=Mitochondrial complex I subunit%2C NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9;CGSNL Gene Symbol=FLO13;CGSNL Gene Name=FLOURY ENDOSPERM 3;Oryzabase Gene Symbol Synonym(s)=OsNDUFA9%2C NDUFA9;Oryzabase Gene Name Synonym(s)=Mitochondrial complex I accessory subunit OsNDUFA9%2C NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9%2C floury endosperm 3;Note=Mitochondrial complex I subunit%2C Mitochondrial NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit%2C Embryo development%2C Endosperm starch synthesis;Transcript_evidence=AK102271;ORF_evidence=Q6K6A4;InterPro=NAD(P)-binding domain superfamily (IPR036291),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033089A08;Manual Curation=August 31%2C 2018;Literature_PMID=30151559;Oryzabase=22601;Expression=AK102271;TENOR=Os02t0816800-01;KEGG=Os02t0816800-01;Subcellular location=mitochondrion (GO:0005739)
Chr02	irgsp1_rep	five_prime_UTR	35013576	35013640	.	+	.	Parent=Os02t0816800-01
Chr02	irgsp1_rep	CDS	35013641	35013755	.	+	0	Parent=Os02t0816800-01
Chr02	irgsp1_rep	CDS	35013860	35013965	.	+	2	Parent=Os02t0816800-01
Chr02	irgsp1_rep	CDS	35014589	35014653	.	+	1	Parent=Os02t0816800-01
Chr02	irgsp1_rep	CDS	35014775	35014860	.	+	2	Parent=Os02t0816800-01
Chr02	irgsp1_rep	CDS	35014962	35015046	.	+	0	Parent=Os02t0816800-01
Chr02	irgsp1_rep	CDS	35015120	35015190	.	+	2	Parent=Os02t0816800-01
Chr02	irgsp1_rep	CDS	35015907	35016038	.	+	0	Parent=Os02t0816800-01
Chr02	irgsp1_rep	CDS	35016161	35016276	.	+	0	Parent=Os02t0816800-01
Chr02	irgsp1_rep	CDS	35016635	35016758	.	+	1	Parent=Os02t0816800-01
Chr02	irgsp1_rep	CDS	35016856	35016924	.	+	0	Parent=Os02t0816800-01
Chr02	irgsp1_rep	CDS	35017015	35017135	.	+	0	Parent=Os02t0816800-01
Chr02	irgsp1_rep	CDS	35017214	35017350	.	+	2	Parent=Os02t0816800-01
Chr02	irgsp1_rep	three_prime_UTR	35017351	35017647	.	+	.	Parent=Os02t0816800-01
Chr02	irgsp1_rep	mRNA	35028569	35040463	.	+	.	ID=Os02t0816900-01;Name=Os02t0816900-01;Locus_id=Os02g0816900;Oryzabase Gene Symbol Synonym(s)=OSMYOXIB%2C OsMyoXIB;Oryzabase Gene Name Synonym(s)=myosin XI B%2C Myosin class XI B;Note=Myosin XI (Fragment).;Transcript_evidence=AK122154 (DDBJ%2C Best hit);ORF_evidence=Q5ECI1 (UniProt);GO=Cellular Component: myosin complex (GO:0016459),Molecular Function: motor activity (GO:0003774),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=IQ motif%2C EF-hand binding site (IPR000048),Myosin head%2C motor domain (IPR001609),Dilute (IPR002710),Dil domain (IPR018444);NIAS_FLcDNA=J033145D02;Oryzabase=14680;Expression=AK122154;TENOR=Os02t0816900-01;KEGG=Os02t0816900-01
Chr02	irgsp1_rep	five_prime_UTR	35028569	35028569	.	+	.	Parent=Os02t0816900-01
Chr02	irgsp1_rep	CDS	35028570	35028644	.	+	0	Parent=Os02t0816900-01
Chr02	irgsp1_rep	CDS	35029223	35029372	.	+	0	Parent=Os02t0816900-01
Chr02	irgsp1_rep	CDS	35029476	35029612	.	+	0	Parent=Os02t0816900-01
Chr02	irgsp1_rep	CDS	35029693	35029839	.	+	1	Parent=Os02t0816900-01
Chr02	irgsp1_rep	CDS	35029935	35030036	.	+	1	Parent=Os02t0816900-01
Chr02	irgsp1_rep	CDS	35030982	35031036	.	+	1	Parent=Os02t0816900-01
Chr02	irgsp1_rep	CDS	35031141	35031245	.	+	0	Parent=Os02t0816900-01
Chr02	irgsp1_rep	CDS	35031615	35031652	.	+	0	Parent=Os02t0816900-01
Chr02	irgsp1_rep	CDS	35031762	35031888	.	+	1	Parent=Os02t0816900-01
Chr02	irgsp1_rep	CDS	35031969	35032139	.	+	0	Parent=Os02t0816900-01
Chr02	irgsp1_rep	CDS	35032228	35032359	.	+	0	Parent=Os02t0816900-01
Chr02	irgsp1_rep	CDS	35032436	35032545	.	+	0	Parent=Os02t0816900-01
Chr02	irgsp1_rep	CDS	35032625	35032685	.	+	1	Parent=Os02t0816900-01
Chr02	irgsp1_rep	CDS	35033263	35033440	.	+	0	Parent=Os02t0816900-01
Chr02	irgsp1_rep	CDS	35033550	35033755	.	+	2	Parent=Os02t0816900-01
Chr02	irgsp1_rep	CDS	35034350	35034469	.	+	0	Parent=Os02t0816900-01
Chr02	irgsp1_rep	CDS	35034817	35034915	.	+	0	Parent=Os02t0816900-01
Chr02	irgsp1_rep	CDS	35035353	35035565	.	+	0	Parent=Os02t0816900-01
Chr02	irgsp1_rep	CDS	35035761	35035900	.	+	0	Parent=Os02t0816900-01
Chr02	irgsp1_rep	CDS	35035976	35036090	.	+	1	Parent=Os02t0816900-01
Chr02	irgsp1_rep	CDS	35036191	35036229	.	+	0	Parent=Os02t0816900-01
Chr02	irgsp1_rep	CDS	35036323	35036406	.	+	0	Parent=Os02t0816900-01
Chr02	irgsp1_rep	CDS	35036476	35036646	.	+	0	Parent=Os02t0816900-01
Chr02	irgsp1_rep	CDS	35037452	35037607	.	+	0	Parent=Os02t0816900-01
Chr02	irgsp1_rep	CDS	35037700	35037885	.	+	0	Parent=Os02t0816900-01
Chr02	irgsp1_rep	CDS	35037980	35038108	.	+	0	Parent=Os02t0816900-01
Chr02	irgsp1_rep	CDS	35038186	35038256	.	+	0	Parent=Os02t0816900-01
Chr02	irgsp1_rep	CDS	35038341	35038440	.	+	1	Parent=Os02t0816900-01
Chr02	irgsp1_rep	CDS	35038523	35038579	.	+	0	Parent=Os02t0816900-01
Chr02	irgsp1_rep	CDS	35039285	35039341	.	+	0	Parent=Os02t0816900-01
Chr02	irgsp1_rep	CDS	35039447	35039527	.	+	0	Parent=Os02t0816900-01
Chr02	irgsp1_rep	CDS	35039763	35039845	.	+	0	Parent=Os02t0816900-01
Chr02	irgsp1_rep	CDS	35039955	35040069	.	+	1	Parent=Os02t0816900-01
Chr02	irgsp1_rep	three_prime_UTR	35040070	35040463	.	+	.	Parent=Os02t0816900-01
Chr02	irgsp1_rep	mRNA	35041083	35046389	.	+	.	ID=Os02t0817000-01;Name=Os02t0817000-01;Locus_id=Os02g0817000;CGSNL Gene Symbol=DLN70;CGSNL Gene Name=DLN REPRESSOR 70;Oryzabase Gene Symbol Synonym(s)=OsDLN70;Oryzabase Gene Name Synonym(s)=DLN repressor 70%2C DLN motif protein 70;Note=Homeodomain-related domain containing protein.;Transcript_evidence=AK099758 (DDBJ%2C Best hit);ORF_evidence=XP_002453039.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-related (IPR012287),MYB-like (IPR017877);NIAS_FLcDNA=J013093J01;Oryzabase=23177;Expression=AK099758;TENOR=Os02t0817000-01;KEGG=Os02t0817000-01
Chr02	irgsp1_rep	five_prime_UTR	35041083	35041243	.	+	.	Parent=Os02t0817000-01
Chr02	irgsp1_rep	five_prime_UTR	35042147	35042148	.	+	.	Parent=Os02t0817000-01
Chr02	irgsp1_rep	CDS	35042149	35042322	.	+	0	Parent=Os02t0817000-01
Chr02	irgsp1_rep	CDS	35042761	35043309	.	+	0	Parent=Os02t0817000-01
Chr02	irgsp1_rep	CDS	35043791	35043855	.	+	0	Parent=Os02t0817000-01
Chr02	irgsp1_rep	CDS	35043924	35044464	.	+	1	Parent=Os02t0817000-01
Chr02	irgsp1_rep	CDS	35044828	35046117	.	+	0	Parent=Os02t0817000-01
Chr02	irgsp1_rep	three_prime_UTR	35046118	35046389	.	+	.	Parent=Os02t0817000-01
Chr02	irgsp1_rep	mRNA	35042134	35046118	.	-	.	ID=Os02t0817050-00;Name=Os02t0817050-00;Locus_id=Os02g0817050;Note=Hypothetical protein.;Transcript_evidence=tplb0027f11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0817050-00
Chr02	irgsp1_rep	five_prime_UTR	35045660	35046118	.	-	.	Parent=Os02t0817050-00
Chr02	irgsp1_rep	CDS	35045396	35045659	.	-	0	Parent=Os02t0817050-00
Chr02	irgsp1_rep	three_prime_UTR	35044819	35045395	.	-	.	Parent=Os02t0817050-00
Chr02	irgsp1_rep	three_prime_UTR	35044223	35044452	.	-	.	Parent=Os02t0817050-00
Chr02	irgsp1_rep	three_prime_UTR	35043931	35044133	.	-	.	Parent=Os02t0817050-00
Chr02	irgsp1_rep	three_prime_UTR	35043796	35043866	.	-	.	Parent=Os02t0817050-00
Chr02	irgsp1_rep	three_prime_UTR	35042772	35043319	.	-	.	Parent=Os02t0817050-00
Chr02	irgsp1_rep	three_prime_UTR	35042134	35042331	.	-	.	Parent=Os02t0817050-00
Chr02	irgsp1_rep	mRNA	35056989	35062529	.	-	.	ID=Os02t0817200-01;Name=Os02t0817200-01;Locus_id=Os02g0817200;Oryzabase Gene Symbol Synonym(s)=OsWD40-59;Note=WD-40 repeat containing protein.;Transcript_evidence=AK073919 (DDBJ%2C Best hit);ORF_evidence=NP_001149047.1 (RefSeq);GO=Biological Process: regulation of actin filament polymerization (GO:0030833),Cellular Component: cytoskeleton (GO:0005856),Molecular Function: actin binding (GO:0003779),Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40-like Beta Propeller (IPR011659),WD40/YVTN repeat-like-containing domain (IPR015943),Actin-related protein 2/3 complex%2C subunit 1 (IPR017383),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J033071G14;Oryzabase=10740;Expression=AK073919;TENOR=Os02t0817200-01;KEGG=Os02t0817200-01
Chr02	irgsp1_rep	five_prime_UTR	35062441	35062529	.	-	.	Parent=Os02t0817200-01
Chr02	irgsp1_rep	CDS	35062371	35062440	.	-	0	Parent=Os02t0817200-01
Chr02	irgsp1_rep	CDS	35061203	35061288	.	-	2	Parent=Os02t0817200-01
Chr02	irgsp1_rep	CDS	35060980	35061056	.	-	0	Parent=Os02t0817200-01
Chr02	irgsp1_rep	CDS	35060782	35060876	.	-	1	Parent=Os02t0817200-01
Chr02	irgsp1_rep	CDS	35060254	35060323	.	-	2	Parent=Os02t0817200-01
Chr02	irgsp1_rep	CDS	35059999	35060068	.	-	1	Parent=Os02t0817200-01
Chr02	irgsp1_rep	CDS	35059718	35059791	.	-	0	Parent=Os02t0817200-01
Chr02	irgsp1_rep	CDS	35059601	35059643	.	-	1	Parent=Os02t0817200-01
Chr02	irgsp1_rep	CDS	35059192	35059273	.	-	0	Parent=Os02t0817200-01
Chr02	irgsp1_rep	CDS	35058720	35058808	.	-	2	Parent=Os02t0817200-01
Chr02	irgsp1_rep	CDS	35058545	35058630	.	-	0	Parent=Os02t0817200-01
Chr02	irgsp1_rep	CDS	35058244	35058304	.	-	1	Parent=Os02t0817200-01
Chr02	irgsp1_rep	CDS	35057618	35057724	.	-	0	Parent=Os02t0817200-01
Chr02	irgsp1_rep	CDS	35057475	35057533	.	-	1	Parent=Os02t0817200-01
Chr02	irgsp1_rep	CDS	35057328	35057386	.	-	2	Parent=Os02t0817200-01
Chr02	irgsp1_rep	three_prime_UTR	35056989	35057327	.	-	.	Parent=Os02t0817200-01
Chr02	irgsp1_rep	mRNA	35056969	35058273	.	-	.	ID=Os02t0817200-02;Name=Os02t0817200-02;Locus_id=Os02g0817200;Oryzabase Gene Symbol Synonym(s)=OsWD40-59;Note=Similar to actin-related protein 2/3 complex subunit 1B.;Transcript_evidence=AK104007 (DDBJ%2C Best hit);ORF_evidence=NP_001149047.1 (RefSeq);GO=Biological Process: regulation of actin filament polymerization (GO:0030833),Cellular Component: cytoskeleton (GO:0005856),Molecular Function: actin binding (GO:0003779);InterPro=Actin-related protein 2/3 complex%2C subunit 1 (IPR017383);NIAS_FLcDNA=001-002-F12;Oryzabase=10740;Expression=AK104007;TENOR=Os02t0817200-02;KEGG=Os02t0817200-02
Chr02	irgsp1_rep	CDS	35058244	35058273	.	-	0	Parent=Os02t0817200-02
Chr02	irgsp1_rep	CDS	35057618	35057724	.	-	0	Parent=Os02t0817200-02
Chr02	irgsp1_rep	CDS	35057475	35057533	.	-	1	Parent=Os02t0817200-02
Chr02	irgsp1_rep	CDS	35057328	35057386	.	-	2	Parent=Os02t0817200-02
Chr02	irgsp1_rep	three_prime_UTR	35056969	35057327	.	-	.	Parent=Os02t0817200-02
Chr02	irgsp1_rep	mRNA	35057036	35062522	.	+	.	ID=Os02t0817300-00;Name=Os02t0817300-00;Locus_id=Os02g0817300;Note=Hypothetical protein.;Transcript_evidence=tplb0059i13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0817300-00
Chr02	irgsp1_rep	five_prime_UTR	35057036	35057382	.	+	.	Parent=Os02t0817300-00
Chr02	irgsp1_rep	five_prime_UTR	35057471	35057535	.	+	.	Parent=Os02t0817300-00
Chr02	irgsp1_rep	five_prime_UTR	35057615	35057748	.	+	.	Parent=Os02t0817300-00
Chr02	irgsp1_rep	five_prime_UTR	35058514	35058630	.	+	.	Parent=Os02t0817300-00
Chr02	irgsp1_rep	five_prime_UTR	35058720	35058803	.	+	.	Parent=Os02t0817300-00
Chr02	irgsp1_rep	five_prime_UTR	35059185	35059295	.	+	.	Parent=Os02t0817300-00
Chr02	irgsp1_rep	CDS	35059296	35059297	.	+	0	Parent=Os02t0817300-00
Chr02	irgsp1_rep	CDS	35059696	35059787	.	+	1	Parent=Os02t0817300-00
Chr02	irgsp1_rep	CDS	35059991	35060074	.	+	2	Parent=Os02t0817300-00
Chr02	irgsp1_rep	CDS	35060257	35060318	.	+	2	Parent=Os02t0817300-00
Chr02	irgsp1_rep	CDS	35060777	35060806	.	+	0	Parent=Os02t0817300-00
Chr02	irgsp1_rep	three_prime_UTR	35060807	35060862	.	+	.	Parent=Os02t0817300-00
Chr02	irgsp1_rep	three_prime_UTR	35060963	35061056	.	+	.	Parent=Os02t0817300-00
Chr02	irgsp1_rep	three_prime_UTR	35061203	35061288	.	+	.	Parent=Os02t0817300-00
Chr02	irgsp1_rep	three_prime_UTR	35062371	35062522	.	+	.	Parent=Os02t0817300-00
Chr02	irgsp1_rep	mRNA	35067201	35068727	.	-	.	ID=Os02t0817400-01;Name=Os02t0817400-01;Locus_id=Os02g0817400;Note=Conserved hypothetical protein.;Transcript_evidence=AK110894 (DDBJ%2C Best hit);ORF_evidence=Q6K698 (UniProt);NIAS_FLcDNA=002-173-A04;TENOR=Os02t0817400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	35068421	35068727	.	-	.	Parent=Os02t0817400-01
Chr02	irgsp1_rep	CDS	35067923	35068420	.	-	0	Parent=Os02t0817400-01
Chr02	irgsp1_rep	three_prime_UTR	35067201	35067922	.	-	.	Parent=Os02t0817400-01
Chr02	irgsp1_rep	mRNA	35067978	35072576	.	+	.	ID=Os02t0817500-01;Name=Os02t0817500-01;Locus_id=Os02g0817500;Oryzabase Gene Symbol Synonym(s)=KOB1;Oryzabase Gene Name Synonym(s)=K+ channel beta 1 subunit%2C K+ Channel beta Subunit;Note=Potassium channel%2C voltage-dependent%2C beta subunit%2C KCNAB-related domain containing protein.;Transcript_evidence=AK072707 (DDBJ%2C Best hit);ORF_evidence=NP_001148812.1 (RefSeq);GO=Biological Process: potassium ion transport (GO:0006813),Biological Process: transmembrane transport (GO:0055085);InterPro=Aldo/keto reductase (IPR001395),Potassium channel%2C voltage-dependent%2C beta subunit%2C KCNAB-related (IPR005399),NADP-dependent oxidoreductase domain (IPR023210);NIAS_FLcDNA=J023139I11;Oryzabase=12511;Expression=AK072707;TENOR=Os02t0817500-01;KEGG=Os02t0817500-01
Chr02	irgsp1_rep	five_prime_UTR	35067978	35068082	.	+	.	Parent=Os02t0817500-01
Chr02	irgsp1_rep	CDS	35068083	35068646	.	+	0	Parent=Os02t0817500-01
Chr02	irgsp1_rep	CDS	35070632	35070775	.	+	0	Parent=Os02t0817500-01
Chr02	irgsp1_rep	CDS	35071943	35072107	.	+	0	Parent=Os02t0817500-01
Chr02	irgsp1_rep	CDS	35072229	35072342	.	+	0	Parent=Os02t0817500-01
Chr02	irgsp1_rep	three_prime_UTR	35072343	35072576	.	+	.	Parent=Os02t0817500-01
Chr02	irgsp1_rep	mRNA	35068020	35072582	.	+	.	ID=Os02t0817500-02;Name=Os02t0817500-02;Locus_id=Os02g0817500;Oryzabase Gene Symbol Synonym(s)=KOB1;Oryzabase Gene Name Synonym(s)=K+ channel beta 1 subunit%2C K+ Channel beta Subunit;Note=Potassium channel%2C voltage-dependent%2C beta subunit%2C KCNAB-related domain containing protein.;Transcript_evidence=AK104135 (DDBJ%2C Best hit);ORF_evidence=NP_001148812.1 (RefSeq);GO=Biological Process: potassium ion transport (GO:0006813),Biological Process: transmembrane transport (GO:0055085);InterPro=Aldo/keto reductase (IPR001395),Potassium channel%2C voltage-dependent%2C beta subunit%2C KCNAB-related (IPR005399),NADP-dependent oxidoreductase domain (IPR023210);NIAS_FLcDNA=006-204-E11;Oryzabase=12511;Expression=AK104135;TENOR=Os02t0817500-02;KEGG=Os02t0817500-02
Chr02	irgsp1_rep	five_prime_UTR	35068020	35068082	.	+	.	Parent=Os02t0817500-02
Chr02	irgsp1_rep	CDS	35068083	35068646	.	+	0	Parent=Os02t0817500-02
Chr02	irgsp1_rep	CDS	35070632	35070775	.	+	0	Parent=Os02t0817500-02
Chr02	irgsp1_rep	CDS	35071943	35072107	.	+	0	Parent=Os02t0817500-02
Chr02	irgsp1_rep	CDS	35072229	35072342	.	+	0	Parent=Os02t0817500-02
Chr02	irgsp1_rep	three_prime_UTR	35072343	35072582	.	+	.	Parent=Os02t0817500-02
Chr02	irgsp1_rep	mRNA	35073371	35075799	.	-	.	ID=Os02t0817600-01;Name=Os02t0817600-01;Locus_id=Os02g0817600;CGSNL Gene Symbol=IAA10;Oryzabase Gene Symbol Synonym(s)=OsIAA10%2C OsIAA5%2C DLN71%2C OsDLN71;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 10%2C DLN repressor 71%2C DLN motif protein 71%2C Indoleacetic Acid-Induced 10;Note=AUX/IAA protein family protein.;Transcript_evidence=AK069892 (DDBJ%2C Best hit);ORF_evidence=Q0DWF2-2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Aux/IAA-ARF-dimerisation (IPR011525);NIAS_FLcDNA=J023039N11;Oryzabase=10901;Expression=AK069892;TENOR=Os02t0817600-01;KEGG=Os02t0817600-01
Chr02	irgsp1_rep	five_prime_UTR	35075679	35075799	.	-	.	Parent=Os02t0817600-01
Chr02	irgsp1_rep	CDS	35075356	35075678	.	-	0	Parent=Os02t0817600-01
Chr02	irgsp1_rep	CDS	35074521	35074819	.	-	1	Parent=Os02t0817600-01
Chr02	irgsp1_rep	CDS	35074169	35074271	.	-	2	Parent=Os02t0817600-01
Chr02	irgsp1_rep	CDS	35073977	35074038	.	-	1	Parent=Os02t0817600-01
Chr02	irgsp1_rep	CDS	35073704	35073759	.	-	2	Parent=Os02t0817600-01
Chr02	irgsp1_rep	three_prime_UTR	35073371	35073703	.	-	.	Parent=Os02t0817600-01
Chr02	irgsp1_rep	mRNA	35073455	35075763	.	-	.	ID=Os02t0817600-02;Name=Os02t0817600-02;Locus_id=Os02g0817600;CGSNL Gene Symbol=IAA10;Oryzabase Gene Symbol Synonym(s)=OsIAA10%2C OsIAA5%2C DLN71%2C OsDLN71;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 10%2C DLN repressor 71%2C DLN motif protein 71%2C Indoleacetic Acid-Induced 10;Note=Similar to Auxin-responsive protein IAA10.;Transcript_evidence=AK104501 (DDBJ%2C Best hit);ORF_evidence=Q0DWF2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Aux/IAA-ARF-dimerisation (IPR011525);NIAS_FLcDNA=006-302-E07;Oryzabase=10901;Expression=AK104501;TENOR=Os02t0817600-02;KEGG=Os02t0817600-02
Chr02	irgsp1_rep	five_prime_UTR	35075679	35075763	.	-	.	Parent=Os02t0817600-02
Chr02	irgsp1_rep	CDS	35075356	35075678	.	-	0	Parent=Os02t0817600-02
Chr02	irgsp1_rep	CDS	35074521	35074822	.	-	1	Parent=Os02t0817600-02
Chr02	irgsp1_rep	CDS	35074169	35074271	.	-	2	Parent=Os02t0817600-02
Chr02	irgsp1_rep	CDS	35073977	35074038	.	-	1	Parent=Os02t0817600-02
Chr02	irgsp1_rep	CDS	35073704	35073759	.	-	2	Parent=Os02t0817600-02
Chr02	irgsp1_rep	three_prime_UTR	35073455	35073703	.	-	.	Parent=Os02t0817600-02
Chr02	irgsp1_rep	mRNA	35073455	35075761	.	-	.	ID=Os02t0817600-03;Name=Os02t0817600-03;Locus_id=Os02g0817600;CGSNL Gene Symbol=IAA10;Oryzabase Gene Symbol Synonym(s)=OsIAA10%2C OsIAA5%2C DLN71%2C OsDLN71;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 10%2C DLN repressor 71%2C DLN motif protein 71%2C Indoleacetic Acid-Induced 10;Note=AUX/IAA protein family protein.;Transcript_evidence=AK104802 (DDBJ%2C Best hit);ORF_evidence=Q0DWF2-2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Aux/IAA-ARF-dimerisation (IPR011525);NIAS_FLcDNA=001-040-C05;Oryzabase=10901;Expression=AK104802;TENOR=Os02t0817600-03;KEGG=Os02t0817600-03
Chr02	irgsp1_rep	five_prime_UTR	35075679	35075761	.	-	.	Parent=Os02t0817600-03
Chr02	irgsp1_rep	CDS	35075356	35075678	.	-	0	Parent=Os02t0817600-03
Chr02	irgsp1_rep	CDS	35074521	35074819	.	-	1	Parent=Os02t0817600-03
Chr02	irgsp1_rep	CDS	35074169	35074271	.	-	2	Parent=Os02t0817600-03
Chr02	irgsp1_rep	CDS	35073977	35074038	.	-	1	Parent=Os02t0817600-03
Chr02	irgsp1_rep	CDS	35073704	35073759	.	-	2	Parent=Os02t0817600-03
Chr02	irgsp1_rep	three_prime_UTR	35073455	35073703	.	-	.	Parent=Os02t0817600-03
Chr02	irgsp1_rep	mRNA	35080879	35085196	.	-	.	ID=Os02t0817700-02;Name=Os02t0817700-02;Locus_id=Os02g0817700;Oryzabase Gene Symbol Synonym(s)=OsI57%2C I57%2C OsKAT1%2C KAT1;Oryzabase Gene Name Synonym(s)=3-ketoacyl-CoA thiolase%2C 3-ketoacyl-CoA thiolase-like protein;Note=Similar to 3-ketoacyl-CoA thiolase (Fragment).;Transcript_evidence=AK069768 (DDBJ%2C Best hit),AK061948 (DDBJ%2C Best hit);ORF_evidence=B6TIL6 (UniProt);NIAS_FLcDNA=J023030K20,001-042-E07;Oryzabase=13869;Expression=AK069768;TENOR=Os02t0817700-02;KEGG=Os02t0817700-02 (EC:2.3.1.16)
Chr02	irgsp1_rep	five_prime_UTR	35085070	35085196	.	-	.	Parent=Os02t0817700-02
Chr02	irgsp1_rep	CDS	35084989	35085069	.	-	0	Parent=Os02t0817700-02
Chr02	irgsp1_rep	CDS	35084804	35084880	.	-	0	Parent=Os02t0817700-02
Chr02	irgsp1_rep	CDS	35084130	35084214	.	-	1	Parent=Os02t0817700-02
Chr02	irgsp1_rep	CDS	35083886	35084012	.	-	0	Parent=Os02t0817700-02
Chr02	irgsp1_rep	CDS	35083688	35083786	.	-	2	Parent=Os02t0817700-02
Chr02	irgsp1_rep	CDS	35083518	35083585	.	-	2	Parent=Os02t0817700-02
Chr02	irgsp1_rep	CDS	35083328	35083435	.	-	0	Parent=Os02t0817700-02
Chr02	irgsp1_rep	CDS	35083161	35083238	.	-	0	Parent=Os02t0817700-02
Chr02	irgsp1_rep	CDS	35082882	35083014	.	-	0	Parent=Os02t0817700-02
Chr02	irgsp1_rep	CDS	35082664	35082760	.	-	2	Parent=Os02t0817700-02
Chr02	irgsp1_rep	CDS	35082071	35082194	.	-	1	Parent=Os02t0817700-02
Chr02	irgsp1_rep	CDS	35081874	35081982	.	-	0	Parent=Os02t0817700-02
Chr02	irgsp1_rep	CDS	35081645	35081728	.	-	2	Parent=Os02t0817700-02
Chr02	irgsp1_rep	CDS	35081449	35081525	.	-	2	Parent=Os02t0817700-02
Chr02	irgsp1_rep	three_prime_UTR	35080879	35081448	.	-	.	Parent=Os02t0817700-02
Chr02	irgsp1_rep	mRNA	35086090	35090652	.	-	.	ID=Os02t0817800-01;Name=Os02t0817800-01;Locus_id=Os02g0817800;CGSNL Gene Symbol=RTBP1;CGSNL Gene Name=TELOMERE BINDING PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=rtbp1%2C TBP1%2C OsTBP1;Oryzabase Gene Name Synonym(s)=RICE TELOMERE BINDING PROTEIN 1%2C Telomere Binding Protein 1%2C Telomere-binding protein 1%2C Protein RTBP1%2C rice telomere-binding protein 1%2C telomere binding protein-1;Note=Similar to Telomere binding protein-1.;Transcript_evidence=AK068473 (DDBJ%2C Best hit);ORF_evidence=Q9LL45 (UniProt);NIAS_FLcDNA=J013157F01;Oryzabase=7473;Expression=AK068473;TENOR=Os02t0817800-01;KEGG=Os02t0817800-01
Chr02	irgsp1_rep	five_prime_UTR	35090516	35090652	.	-	.	Parent=Os02t0817800-01
Chr02	irgsp1_rep	five_prime_UTR	35090156	35090379	.	-	.	Parent=Os02t0817800-01
Chr02	irgsp1_rep	five_prime_UTR	35089669	35089741	.	-	.	Parent=Os02t0817800-01
Chr02	irgsp1_rep	CDS	35089588	35089668	.	-	0	Parent=Os02t0817800-01
Chr02	irgsp1_rep	CDS	35088657	35089509	.	-	0	Parent=Os02t0817800-01
Chr02	irgsp1_rep	CDS	35088371	35088513	.	-	2	Parent=Os02t0817800-01
Chr02	irgsp1_rep	three_prime_UTR	35087917	35088370	.	-	.	Parent=Os02t0817800-01
Chr02	irgsp1_rep	three_prime_UTR	35086774	35087506	.	-	.	Parent=Os02t0817800-01
Chr02	irgsp1_rep	three_prime_UTR	35086611	35086674	.	-	.	Parent=Os02t0817800-01
Chr02	irgsp1_rep	three_prime_UTR	35086090	35086509	.	-	.	Parent=Os02t0817800-01
Chr02	irgsp1_rep	mRNA	35085667	35090650	.	-	.	ID=Os02t0817800-02;Name=Os02t0817800-02;Locus_id=Os02g0817800;CGSNL Gene Symbol=RTBP1;CGSNL Gene Name=TELOMERE BINDING PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=rtbp1%2C TBP1%2C OsTBP1;Oryzabase Gene Name Synonym(s)=RICE TELOMERE BINDING PROTEIN 1%2C Telomere Binding Protein 1%2C Telomere-binding protein 1%2C Protein RTBP1%2C rice telomere-binding protein 1%2C telomere binding protein-1;Note=Similar to Telomere binding protein-1.;Transcript_evidence=AK100685 (DDBJ%2C Best hit);ORF_evidence=Q9LL45 (UniProt);NIAS_FLcDNA=J023113M24;Oryzabase=7473;Expression=AK100685;TENOR=Os02t0817800-02;KEGG=Os02t0817800-02
Chr02	irgsp1_rep	five_prime_UTR	35090516	35090650	.	-	.	Parent=Os02t0817800-02
Chr02	irgsp1_rep	five_prime_UTR	35090156	35090379	.	-	.	Parent=Os02t0817800-02
Chr02	irgsp1_rep	five_prime_UTR	35089669	35089741	.	-	.	Parent=Os02t0817800-02
Chr02	irgsp1_rep	CDS	35089588	35089668	.	-	0	Parent=Os02t0817800-02
Chr02	irgsp1_rep	CDS	35088657	35089509	.	-	0	Parent=Os02t0817800-02
Chr02	irgsp1_rep	CDS	35088397	35088513	.	-	2	Parent=Os02t0817800-02
Chr02	irgsp1_rep	CDS	35087472	35087506	.	-	2	Parent=Os02t0817800-02
Chr02	irgsp1_rep	three_prime_UTR	35087262	35087471	.	-	.	Parent=Os02t0817800-02
Chr02	irgsp1_rep	three_prime_UTR	35086774	35087064	.	-	.	Parent=Os02t0817800-02
Chr02	irgsp1_rep	three_prime_UTR	35086611	35086674	.	-	.	Parent=Os02t0817800-02
Chr02	irgsp1_rep	three_prime_UTR	35085667	35086509	.	-	.	Parent=Os02t0817800-02
Chr02	irgsp1_rep	mRNA	35086240	35089695	.	-	.	ID=Os02t0817800-03;Name=Os02t0817800-03;Locus_id=Os02g0817800;RAP-DB Gene Symbol Synonym(s)=RTBP1%2C rtbp1%2C TBP1%2C OsTBP1;RAP-DB Gene Name Synonym(s)=TELOMERE BINDING PROTEIN 1%2C RICE TELOMERE BINDING PROTEIN 1%2C Telomere Binding Protein 1%2C Telomere-binding protein 1%2C Protein RTBP1%2C rice telomere-binding protein 1%2C telomere binding protein-1;CGSNL Gene Symbol=RTBP1;CGSNL Gene Name=TELOMERE BINDING PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=rtbp1%2C TBP1%2C OsTBP1;Oryzabase Gene Name Synonym(s)=RICE TELOMERE BINDING PROTEIN 1%2C Telomere Binding Protein 1%2C Telomere-binding protein 1%2C Protein RTBP1%2C rice telomere-binding protein 1%2C telomere binding protein-1;Note=Telomere binding protein %2C Establishing  and /or maintaining an active telomere configuration;Transcript_evidence=AF242298 (Dongjin);ORF_evidence=Q9LL45;GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: Chromatin binding (GO:0003682),Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin-related domain (IPR029071),Ubiquitin-like (IPR000626),Homeodomain-like (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930);Manual Curation=November 9%2C 2009;Literature_PMID=10811811,17586654,19152316;Oryzabase=7473
Chr02	irgsp1_rep	five_prime_UTR	35089669	35089695	.	-	.	Parent=Os02t0817800-03
Chr02	irgsp1_rep	CDS	35089588	35089668	.	-	0	Parent=Os02t0817800-03
Chr02	irgsp1_rep	CDS	35088657	35089509	.	-	0	Parent=Os02t0817800-03
Chr02	irgsp1_rep	CDS	35088397	35088513	.	-	2	Parent=Os02t0817800-03
Chr02	irgsp1_rep	CDS	35087917	35087996	.	-	2	Parent=Os02t0817800-03
Chr02	irgsp1_rep	CDS	35087262	35087506	.	-	0	Parent=Os02t0817800-03
Chr02	irgsp1_rep	CDS	35086774	35087064	.	-	1	Parent=Os02t0817800-03
Chr02	irgsp1_rep	CDS	35086611	35086674	.	-	1	Parent=Os02t0817800-03
Chr02	irgsp1_rep	CDS	35086339	35086509	.	-	0	Parent=Os02t0817800-03
Chr02	irgsp1_rep	three_prime_UTR	35086240	35086338	.	-	.	Parent=Os02t0817800-03
Chr02	irgsp1_rep	mRNA	35086387	35089674	.	+	.	ID=Os02t0817850-00;Name=Os02t0817850-00;Locus_id=Os02g0817850;Note=Non-protein coding transcript.;Transcript_evidence=tplb0037c08 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os02t0817850-00
Chr02	irgsp1_rep	exon	35086387	35086506	.	+	.	Parent=Os02t0817850-00
Chr02	irgsp1_rep	exon	35086605	35086664	.	+	.	Parent=Os02t0817850-00
Chr02	irgsp1_rep	exon	35086766	35087047	.	+	.	Parent=Os02t0817850-00
Chr02	irgsp1_rep	exon	35087216	35087483	.	+	.	Parent=Os02t0817850-00
Chr02	irgsp1_rep	exon	35087897	35088024	.	+	.	Parent=Os02t0817850-00
Chr02	irgsp1_rep	exon	35088350	35088508	.	+	.	Parent=Os02t0817850-00
Chr02	irgsp1_rep	exon	35088647	35089495	.	+	.	Parent=Os02t0817850-00
Chr02	irgsp1_rep	exon	35089570	35089674	.	+	.	Parent=Os02t0817850-00
Chr02	irgsp1_rep	mRNA	35091247	35099291	.	-	.	ID=Os02t0817900-01;Name=Os02t0817900-01;Locus_id=Os02g0817900;CGSNL Gene Symbol=CYP97A4;CGSNL Gene Name=P-450 97A4;Oryzabase Gene Symbol Synonym(s)=CYP97A4%2C OsCYP97A4;Oryzabase Gene Name Synonym(s)=CytoChrome P450 97A4%2C Carotenoid beta-Ring Hydroxylase CYP97A4;Note=CytoChrome P450 family protein.;Transcript_evidence=AK068163 (DDBJ%2C Best hit);ORF_evidence=B6SVI8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J013135B04;Oryzabase=12045;Expression=AK068163;TENOR=Os02t0817900-01;KEGG=Os02t0817900-01
Chr02	irgsp1_rep	five_prime_UTR	35099240	35099291	.	-	.	Parent=Os02t0817900-01
Chr02	irgsp1_rep	CDS	35098929	35099239	.	-	0	Parent=Os02t0817900-01
Chr02	irgsp1_rep	CDS	35098618	35098831	.	-	1	Parent=Os02t0817900-01
Chr02	irgsp1_rep	CDS	35098447	35098518	.	-	0	Parent=Os02t0817900-01
Chr02	irgsp1_rep	CDS	35098249	35098359	.	-	0	Parent=Os02t0817900-01
Chr02	irgsp1_rep	CDS	35097976	35098167	.	-	0	Parent=Os02t0817900-01
Chr02	irgsp1_rep	CDS	35097712	35097873	.	-	0	Parent=Os02t0817900-01
Chr02	irgsp1_rep	CDS	35097530	35097625	.	-	0	Parent=Os02t0817900-01
Chr02	irgsp1_rep	CDS	35097348	35097449	.	-	0	Parent=Os02t0817900-01
Chr02	irgsp1_rep	CDS	35097168	35097200	.	-	0	Parent=Os02t0817900-01
Chr02	irgsp1_rep	CDS	35096990	35097070	.	-	0	Parent=Os02t0817900-01
Chr02	irgsp1_rep	CDS	35096826	35096908	.	-	0	Parent=Os02t0817900-01
Chr02	irgsp1_rep	CDS	35096028	35096159	.	-	1	Parent=Os02t0817900-01
Chr02	irgsp1_rep	CDS	35094729	35094789	.	-	1	Parent=Os02t0817900-01
Chr02	irgsp1_rep	CDS	35094429	35094494	.	-	0	Parent=Os02t0817900-01
Chr02	irgsp1_rep	CDS	35094136	35094351	.	-	0	Parent=Os02t0817900-01
Chr02	irgsp1_rep	three_prime_UTR	35094097	35094135	.	-	.	Parent=Os02t0817900-01
Chr02	irgsp1_rep	three_prime_UTR	35092490	35093672	.	-	.	Parent=Os02t0817900-01
Chr02	irgsp1_rep	three_prime_UTR	35091841	35092339	.	-	.	Parent=Os02t0817900-01
Chr02	irgsp1_rep	three_prime_UTR	35091247	35091757	.	-	.	Parent=Os02t0817900-01
Chr02	irgsp1_rep	mRNA	35092344	35093744	.	+	.	ID=Os02t0818000-01;Name=Os02t0818000-01;Locus_id=Os02g0818000;Oryzabase Gene Symbol Synonym(s)=OsCBSX3%2C OsCBSX3a%2C OsCBSX3b%2C OsCBSX3c%2C OsCBSX3d%2C OsCBSX3e;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSX3%2C CBS domain containing protein OsCBSX3;Note=Similar to Brown planthopper-induced resistance protein 1.;Transcript_evidence=AK065134 (DDBJ%2C Best hit),AK071580 (DDBJ%2C Best hit),AK104103 (DDBJ%2C Best hit),AK104525 (DDBJ%2C Best hit),AK104684 (DDBJ%2C Best hit),AK104947 (DDBJ%2C Best hit);ORF_evidence=Q6V9H6 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein binding (GO:0005515);InterPro=Cystathionine beta-synthase%2C core (IPR000644),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J013001P24,J023106O04,006-202-B08,006-303-H03,001-036-B10,001-108-G08;Oryzabase=10320;TENOR=Os02t0818000-01
Chr02	irgsp1_rep	CDS	35092344	35092661	.	+	0	Parent=Os02t0818000-01
Chr02	irgsp1_rep	CDS	35092779	35092955	.	+	0	Parent=Os02t0818000-01
Chr02	irgsp1_rep	CDS	35093064	35093133	.	+	0	Parent=Os02t0818000-01
Chr02	irgsp1_rep	CDS	35093224	35093295	.	+	2	Parent=Os02t0818000-01
Chr02	irgsp1_rep	CDS	35093428	35093483	.	+	2	Parent=Os02t0818000-01
Chr02	irgsp1_rep	three_prime_UTR	35093484	35093744	.	+	.	Parent=Os02t0818000-01
Chr02	irgsp1_rep	mRNA	35108829	35109683	.	-	.	ID=Os02t0818450-00;Name=Os02t0818450-00;Locus_id=Os02g0818450;Note=Similar to Pib.;Transcript_evidence=ab initio prediction;ORF_evidence=Q9ZNV6 (UniProt);TENOR=Os02t0818450-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	35108829	35109683	.	-	0	Parent=Os02t0818450-00
Chr02	irgsp1_rep	mRNA	35118205	35118793	.	-	.	ID=Os02t0818500-01;Name=Os02t0818500-01;Locus_id=Os02g0818500;Note=Non-protein coding transcript.;Transcript_evidence=AK062881 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-108-D05;TENOR=Os02t0818500-01
Chr02	irgsp1_rep	exon	35118205	35118793	.	-	.	Parent=Os02t0818500-01
Chr02	irgsp1_rep	mRNA	35115995	35118769	.	-	.	ID=Os02t0818500-02;Name=Os02t0818500-02;Locus_id=Os02g0818500;Note=Conserved hypothetical protein.;Transcript_evidence=AK073656 (DDBJ%2C Best hit);ORF_evidence=A2YU57 (UniProt);NIAS_FLcDNA=J033052H14;Expression=AK073656;TENOR=Os02t0818500-02;KEGG=Os02t0818500-02
Chr02	irgsp1_rep	five_prime_UTR	35118620	35118769	.	-	.	Parent=Os02t0818500-02
Chr02	irgsp1_rep	five_prime_UTR	35116695	35116814	.	-	.	Parent=Os02t0818500-02
Chr02	irgsp1_rep	CDS	35116299	35116694	.	-	0	Parent=Os02t0818500-02
Chr02	irgsp1_rep	three_prime_UTR	35115995	35116298	.	-	.	Parent=Os02t0818500-02
Chr02	irgsp1_rep	mRNA	35113637	35116084	.	-	.	ID=Os02t0818500-03;Name=Os02t0818500-03;Locus_id=Os02g0818500;Note=Similar to Pib.;Transcript_evidence=AK067225 (DDBJ%2C Best hit);ORF_evidence=Q9ZNV6 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);NIAS_FLcDNA=J013098J11;Expression=AK067225;TENOR=Os02t0818500-03;KEGG=Os02t0818500-03
Chr02	irgsp1_rep	five_prime_UTR	35115835	35116084	.	-	.	Parent=Os02t0818500-03
Chr02	irgsp1_rep	CDS	35114986	35115834	.	-	0	Parent=Os02t0818500-03
Chr02	irgsp1_rep	three_prime_UTR	35113637	35114985	.	-	.	Parent=Os02t0818500-03
Chr02	irgsp1_rep	mRNA	35114153	35114395	.	+	.	ID=Os02t0818601-00;Name=Os02t0818601-00;Locus_id=Os02g0818601;Note=Similar to H0215A08.3 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01N39 (UniProt);TENOR=Os02t0818601-00
Chr02	irgsp1_rep	CDS	35114153	35114395	.	+	0	Parent=Os02t0818601-00
Chr02	irgsp1_rep	mRNA	35120165	35122630	.	-	.	ID=Os02t0818700-00;Name=Os02t0818700-00;Locus_id=Os02g0818700;Note=Similar to tumor-related protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001147353.1 (RefSeq);InterPro=Nicotinamide N-methyltransferase%2C putative (IPR019410);TENOR=Os02t0818700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	35122572	35122630	.	-	0	Parent=Os02t0818700-00
Chr02	irgsp1_rep	CDS	35122357	35122423	.	-	1	Parent=Os02t0818700-00
Chr02	irgsp1_rep	CDS	35122178	35122243	.	-	0	Parent=Os02t0818700-00
Chr02	irgsp1_rep	CDS	35121807	35121900	.	-	0	Parent=Os02t0818700-00
Chr02	irgsp1_rep	CDS	35121607	35121723	.	-	2	Parent=Os02t0818700-00
Chr02	irgsp1_rep	CDS	35121262	35121362	.	-	2	Parent=Os02t0818700-00
Chr02	irgsp1_rep	CDS	35120735	35120809	.	-	0	Parent=Os02t0818700-00
Chr02	irgsp1_rep	CDS	35120560	35120652	.	-	0	Parent=Os02t0818700-00
Chr02	irgsp1_rep	CDS	35120165	35120443	.	-	0	Parent=Os02t0818700-00
Chr02	irgsp1_rep	mRNA	35122839	35126814	.	+	.	ID=Os02t0818800-01;Name=Os02t0818800-01;Locus_id=Os02g0818800;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK241693 (DDBJ%2C Best hit);ORF_evidence=NP_001048529.2 (RefSeq);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J065195J20;TENOR=Os02t0818800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	35122839	35122910	.	+	.	Parent=Os02t0818800-01
Chr02	irgsp1_rep	CDS	35122911	35124644	.	+	0	Parent=Os02t0818800-01
Chr02	irgsp1_rep	three_prime_UTR	35124645	35125210	.	+	.	Parent=Os02t0818800-01
Chr02	irgsp1_rep	three_prime_UTR	35126003	35126079	.	+	.	Parent=Os02t0818800-01
Chr02	irgsp1_rep	three_prime_UTR	35126205	35126814	.	+	.	Parent=Os02t0818800-01
Chr02	irgsp1_rep	mRNA	35130674	35131877	.	+	.	ID=Os02t0818900-01;Name=Os02t0818900-01;Locus_id=Os02g0818900;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK107997 (DDBJ%2C Best hit);ORF_evidence=B9F4I5 (UniProt);NIAS_FLcDNA=002-135-G02;Expression=AK107997;TENOR=Os02t0818900-01;KEGG=Os02t0818900-01
Chr02	irgsp1_rep	five_prime_UTR	35130674	35130798	.	+	.	Parent=Os02t0818900-01
Chr02	irgsp1_rep	CDS	35130799	35130949	.	+	0	Parent=Os02t0818900-01
Chr02	irgsp1_rep	CDS	35131059	35131513	.	+	2	Parent=Os02t0818900-01
Chr02	irgsp1_rep	three_prime_UTR	35131514	35131877	.	+	.	Parent=Os02t0818900-01
Chr02	irgsp1_rep	mRNA	35134539	35135089	.	+	.	ID=Os02t0819000-00;Name=Os02t0819000-00;Locus_id=Os02g0819000;CGSNL Gene Symbol=HMP16;CGSNL Gene Name=HEAVY METAL-ASSOCIATED PROTEIN 16;Oryzabase Gene Symbol Synonym(s)=OsHMP16;Oryzabase Gene Name Synonym(s)=Heavy metal-associated protein 16;Note=Hypothetical conserved gene.;Transcript_evidence=EU959154 (DDBJ);ORF_evidence=Q6K9R4 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);Oryzabase=23538;TENOR=Os02t0819000-00;KEGG=Os02t0819000-00
Chr02	irgsp1_rep	CDS	35134539	35134662	.	+	0	Parent=Os02t0819000-00
Chr02	irgsp1_rep	CDS	35134751	35135088	.	+	2	Parent=Os02t0819000-00
Chr02	irgsp1_rep	three_prime_UTR	35135089	35135089	.	+	.	Parent=Os02t0819000-00
Chr02	irgsp1_rep	mRNA	35155661	35158722	.	+	.	ID=Os02t0819100-01;Name=Os02t0819100-01;Locus_id=Os02g0819100;CGSNL Gene Symbol=DHHC1;CGSNL Gene Name=DHHC-TYPE ZINC FINGER PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsDHHC1%2C OsPAT15%2C PAT15;Oryzabase Gene Name Synonym(s)=DHHC-type zinc finger protein 1%2C Protein S-acyltransferase 15;Note=DHHC-type zinc finger protein%2C Regulation of plant architecture by altering the tiller;Transcript_evidence=AK100156;ORF_evidence=Q6K9R3;InterPro=Palmitoyltransferase%2C DHHC domain (IPR001594);NIAS_FLcDNA=J023019I03;Manual Curation=January 12%2C 2017;Literature_PMID=27964781;Oryzabase=21641;Expression=AK100156;TENOR=Os02t0819100-01;KEGG=Os02t0819100-01
Chr02	irgsp1_rep	five_prime_UTR	35155661	35155725	.	+	.	Parent=Os02t0819100-01
Chr02	irgsp1_rep	CDS	35155726	35155995	.	+	0	Parent=Os02t0819100-01
Chr02	irgsp1_rep	CDS	35156318	35156410	.	+	0	Parent=Os02t0819100-01
Chr02	irgsp1_rep	CDS	35156508	35156609	.	+	0	Parent=Os02t0819100-01
Chr02	irgsp1_rep	CDS	35156687	35156755	.	+	0	Parent=Os02t0819100-01
Chr02	irgsp1_rep	CDS	35157793	35157891	.	+	0	Parent=Os02t0819100-01
Chr02	irgsp1_rep	CDS	35157973	35158068	.	+	0	Parent=Os02t0819100-01
Chr02	irgsp1_rep	CDS	35158231	35158320	.	+	0	Parent=Os02t0819100-01
Chr02	irgsp1_rep	three_prime_UTR	35158321	35158722	.	+	.	Parent=Os02t0819100-01
Chr02	irgsp1_rep	mRNA	35155726	35158320	.	+	.	ID=Os02t0819100-02;Name=Os02t0819100-02;Locus_id=Os02g0819100;RAP-DB Gene Symbol Synonym(s)=OsDHHC1;CGSNL Gene Symbol=DHHC1;CGSNL Gene Name=DHHC-TYPE ZINC FINGER PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsDHHC1%2C OsPAT15%2C PAT15;Oryzabase Gene Name Synonym(s)=DHHC-type zinc finger protein 1%2C Protein S-acyltransferase 15;Note=DHHC-type zinc finger protein%2C Regulation of plant architecture by altering the tiller;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;InterPro=Palmitoyltransferase%2C DHHC domain (IPR001594);Manual Curation=January 12%2C 2017;Literature_PMID=27964781;Oryzabase=21641
Chr02	irgsp1_rep	CDS	35155726	35155833	.	+	0	Parent=Os02t0819100-02
Chr02	irgsp1_rep	CDS	35155981	35155995	.	+	0	Parent=Os02t0819100-02
Chr02	irgsp1_rep	CDS	35156318	35156410	.	+	0	Parent=Os02t0819100-02
Chr02	irgsp1_rep	CDS	35156508	35156609	.	+	0	Parent=Os02t0819100-02
Chr02	irgsp1_rep	CDS	35156687	35156755	.	+	0	Parent=Os02t0819100-02
Chr02	irgsp1_rep	CDS	35157793	35157891	.	+	0	Parent=Os02t0819100-02
Chr02	irgsp1_rep	CDS	35157973	35158068	.	+	0	Parent=Os02t0819100-02
Chr02	irgsp1_rep	CDS	35158231	35158320	.	+	0	Parent=Os02t0819100-02
Chr02	irgsp1_rep	mRNA	35158967	35161544	.	+	.	ID=Os02t0819200-01;Name=Os02t0819200-01;Locus_id=Os02g0819200;Note=Thioredoxin domain 2 containing protein.;Transcript_evidence=AK102564 (DDBJ%2C Best hit);ORF_evidence=B6TCX1 (UniProt);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Thioredoxin (IPR005746),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766);NIAS_FLcDNA=J033097K15;Expression=AK102564;TENOR=Os02t0819200-01;KEGG=Os02t0819200-01
Chr02	irgsp1_rep	five_prime_UTR	35158967	35159082	.	+	.	Parent=Os02t0819200-01
Chr02	irgsp1_rep	CDS	35159083	35159390	.	+	0	Parent=Os02t0819200-01
Chr02	irgsp1_rep	CDS	35160034	35160108	.	+	1	Parent=Os02t0819200-01
Chr02	irgsp1_rep	CDS	35160190	35160256	.	+	1	Parent=Os02t0819200-01
Chr02	irgsp1_rep	CDS	35160737	35160754	.	+	0	Parent=Os02t0819200-01
Chr02	irgsp1_rep	CDS	35160831	35160929	.	+	0	Parent=Os02t0819200-01
Chr02	irgsp1_rep	three_prime_UTR	35160930	35161544	.	+	.	Parent=Os02t0819200-01
Chr02	irgsp1_rep	mRNA	35162641	35168331	.	+	.	ID=Os02t0819300-01;Name=Os02t0819300-01;Locus_id=Os02g0819300;Note=Hypothetical conserved gene.;Transcript_evidence=AK242989 (DDBJ%2C Best hit);ORF_evidence=Q6K9R1 (UniProt);GO=Molecular Function: RNA binding (GO:0003723),Molecular Function: binding (GO:0005488);InterPro=Pumilio RNA-binding repeat (IPR001313),Armadillo-like helical (IPR011989),Nucleic acid binding NABP (IPR012940),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J090095B13;TENOR=Os02t0819300-01;KEGG=Os02t0819300-01
Chr02	irgsp1_rep	five_prime_UTR	35162641	35162866	.	+	.	Parent=Os02t0819300-01
Chr02	irgsp1_rep	five_prime_UTR	35163419	35163489	.	+	.	Parent=Os02t0819300-01
Chr02	irgsp1_rep	CDS	35163490	35164122	.	+	0	Parent=Os02t0819300-01
Chr02	irgsp1_rep	CDS	35164532	35165363	.	+	0	Parent=Os02t0819300-01
Chr02	irgsp1_rep	CDS	35165443	35166004	.	+	2	Parent=Os02t0819300-01
Chr02	irgsp1_rep	CDS	35166088	35166271	.	+	1	Parent=Os02t0819300-01
Chr02	irgsp1_rep	three_prime_UTR	35166272	35166446	.	+	.	Parent=Os02t0819300-01
Chr02	irgsp1_rep	three_prime_UTR	35166562	35166774	.	+	.	Parent=Os02t0819300-01
Chr02	irgsp1_rep	three_prime_UTR	35166862	35166972	.	+	.	Parent=Os02t0819300-01
Chr02	irgsp1_rep	three_prime_UTR	35167191	35167385	.	+	.	Parent=Os02t0819300-01
Chr02	irgsp1_rep	three_prime_UTR	35167601	35167775	.	+	.	Parent=Os02t0819300-01
Chr02	irgsp1_rep	three_prime_UTR	35167886	35168331	.	+	.	Parent=Os02t0819300-01
Chr02	irgsp1_rep	mRNA	35170411	35175254	.	-	.	ID=Os02t0819400-01;Name=Os02t0819400-01;Locus_id=Os02g0819400;RAP-DB Gene Symbol Synonym(s)=OsLpa1.2%2C Oslpa1%2C Lpa1%2C OsLpa1;RAP-DB Gene Name Synonym(s)=LOW PHYTIC ACID 1%2C Low phytic acid-1%2C low phytic acid 1;CGSNL Gene Symbol=LPA1;CGSNL Gene Name=LOW PHYTIC ACID 1;Oryzabase Gene Symbol Synonym(s)=Lpa1%2C OsLpa1%2C OsLpa1.1%2C OsLpa1.2%2C OsLpa1.3%2C Oslpa1%2C OsLpa1-3.1%2C OsLpa1-3.2%2C OsLpa1-3.3;Oryzabase Gene Name Synonym(s)=Low phytic acid-1%2C low phytic acid 1%2C low PA  1;Note=Phytic acid metabolism;Transcript_evidence=EU366953 (Kaybonnet);ORF_evidence=B5SVV4;InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417);Manual Curation=May 7%2C 2014;Literature_PMID=18566795;Oryzabase=6062;TENOR=Os02t0819400-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	35174857	35175254	.	-	.	Parent=Os02t0819400-01
Chr02	irgsp1_rep	five_prime_UTR	35174611	35174775	.	-	.	Parent=Os02t0819400-01
Chr02	irgsp1_rep	five_prime_UTR	35172687	35173509	.	-	.	Parent=Os02t0819400-01
Chr02	irgsp1_rep	CDS	35172318	35172686	.	-	0	Parent=Os02t0819400-01
Chr02	irgsp1_rep	CDS	35171489	35172220	.	-	0	Parent=Os02t0819400-01
Chr02	irgsp1_rep	CDS	35171111	35171218	.	-	0	Parent=Os02t0819400-01
Chr02	irgsp1_rep	CDS	35170618	35170896	.	-	0	Parent=Os02t0819400-01
Chr02	irgsp1_rep	three_prime_UTR	35170411	35170617	.	-	.	Parent=Os02t0819400-01
Chr02	irgsp1_rep	mRNA	35170411	35175254	.	-	.	ID=Os02t0819400-02;Name=Os02t0819400-02;Locus_id=Os02g0819400;RAP-DB Gene Symbol Synonym(s)=LPA1%2C OsLpa1.1%2C Oslpa1%2C Lpa1%2C OsLpa1;RAP-DB Gene Name Synonym(s)=LOW PHYTIC ACID 1%2C Low phytic acid-1%2C low phytic acid 1;CGSNL Gene Symbol=LPA1;CGSNL Gene Name=LOW PHYTIC ACID 1;Oryzabase Gene Symbol Synonym(s)=Lpa1%2C OsLpa1%2C OsLpa1.1%2C OsLpa1.2%2C OsLpa1.3%2C Oslpa1%2C OsLpa1-3.1%2C OsLpa1-3.2%2C OsLpa1-3.3;Oryzabase Gene Name Synonym(s)=Low phytic acid-1%2C low phytic acid 1%2C low PA  1;Note=Phytic acid metabolism;Transcript_evidence=EU366951 (Kaybonnet);ORF_evidence=B5SVV3;InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417);Manual Curation=May 7%2C 2014;Literature_PMID=18566795;Oryzabase=6062
Chr02	irgsp1_rep	five_prime_UTR	35174857	35175254	.	-	.	Parent=Os02t0819400-02
Chr02	irgsp1_rep	five_prime_UTR	35174764	35174775	.	-	.	Parent=Os02t0819400-02
Chr02	irgsp1_rep	CDS	35174611	35174763	.	-	0	Parent=Os02t0819400-02
Chr02	irgsp1_rep	CDS	35173226	35173509	.	-	0	Parent=Os02t0819400-02
Chr02	irgsp1_rep	CDS	35172991	35173072	.	-	1	Parent=Os02t0819400-02
Chr02	irgsp1_rep	CDS	35172318	35172737	.	-	0	Parent=Os02t0819400-02
Chr02	irgsp1_rep	CDS	35171489	35172220	.	-	0	Parent=Os02t0819400-02
Chr02	irgsp1_rep	CDS	35171111	35171218	.	-	0	Parent=Os02t0819400-02
Chr02	irgsp1_rep	CDS	35170618	35170896	.	-	0	Parent=Os02t0819400-02
Chr02	irgsp1_rep	three_prime_UTR	35170411	35170617	.	-	.	Parent=Os02t0819400-02
Chr02	irgsp1_rep	mRNA	35171248	35175254	.	-	.	ID=Os02t0819400-03;Name=Os02t0819400-03;Locus_id=Os02g0819400;RAP-DB Gene Symbol Synonym(s)=LPA1%2C OsLpa1.3%2C Oslpa1%2C Lpa1%2C OsLpa1;RAP-DB Gene Name Synonym(s)=LOW PHYTIC ACID 1%2C Low phytic acid-1%2C low phytic acid 1;CGSNL Gene Symbol=LPA1;CGSNL Gene Name=LOW PHYTIC ACID 1;Oryzabase Gene Symbol Synonym(s)=Lpa1%2C OsLpa1%2C OsLpa1.1%2C OsLpa1.2%2C OsLpa1.3%2C Oslpa1%2C OsLpa1-3.1%2C OsLpa1-3.2%2C OsLpa1-3.3;Oryzabase Gene Name Synonym(s)=Low phytic acid-1%2C low phytic acid 1%2C low PA  1;Note=Phytic acid metabolism;Transcript_evidence=EU366954 (Kaybonnet);ORF_evidence=B5SVV5;InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417);Manual Curation=May 7%2C 2014;Literature_PMID=18566795;Oryzabase=6062
Chr02	irgsp1_rep	five_prime_UTR	35174857	35175254	.	-	.	Parent=Os02t0819400-03
Chr02	irgsp1_rep	five_prime_UTR	35174611	35174775	.	-	.	Parent=Os02t0819400-03
Chr02	irgsp1_rep	five_prime_UTR	35172687	35173509	.	-	.	Parent=Os02t0819400-03
Chr02	irgsp1_rep	CDS	35172318	35172686	.	-	0	Parent=Os02t0819400-03
Chr02	irgsp1_rep	CDS	35171462	35172220	.	-	0	Parent=Os02t0819400-03
Chr02	irgsp1_rep	three_prime_UTR	35171248	35171461	.	-	.	Parent=Os02t0819400-03
Chr02	irgsp1_rep	mRNA	35170622	35175112	.	+	.	ID=Os02t0819450-00;Name=Os02t0819450-00;Locus_id=Os02g0819450;Note=Hypothetical protein.;Transcript_evidence=tplb0048i15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0819450-00
Chr02	irgsp1_rep	five_prime_UTR	35170622	35170896	.	+	.	Parent=Os02t0819450-00
Chr02	irgsp1_rep	five_prime_UTR	35171111	35171231	.	+	.	Parent=Os02t0819450-00
Chr02	irgsp1_rep	five_prime_UTR	35171500	35172220	.	+	.	Parent=Os02t0819450-00
Chr02	irgsp1_rep	five_prime_UTR	35172318	35172693	.	+	.	Parent=Os02t0819450-00
Chr02	irgsp1_rep	CDS	35172694	35172736	.	+	0	Parent=Os02t0819450-00
Chr02	irgsp1_rep	CDS	35172990	35173072	.	+	2	Parent=Os02t0819450-00
Chr02	irgsp1_rep	CDS	35173226	35173509	.	+	0	Parent=Os02t0819450-00
Chr02	irgsp1_rep	CDS	35174611	35174659	.	+	1	Parent=Os02t0819450-00
Chr02	irgsp1_rep	three_prime_UTR	35174660	35174763	.	+	.	Parent=Os02t0819450-00
Chr02	irgsp1_rep	three_prime_UTR	35174843	35175112	.	+	.	Parent=Os02t0819450-00
Chr02	irgsp1_rep	mRNA	35179248	35184150	.	-	.	ID=Os02t0819500-01;Name=Os02t0819500-01;Locus_id=Os02g0819500;Note=Similar to Cysteine-type peptidase.;Transcript_evidence=AK069427 (DDBJ%2C Best hit),AK119352 (DDBJ%2C Best hit);ORF_evidence=B6UH94 (UniProt);InterPro=Ovarian tumour%2C otubain (IPR003323);NIAS_FLcDNA=J023019L08,001-131-F04;Expression=AK069427;TENOR=Os02t0819500-01;KEGG=Os02t0819500-01
Chr02	irgsp1_rep	five_prime_UTR	35183589	35184150	.	-	.	Parent=Os02t0819500-01
Chr02	irgsp1_rep	five_prime_UTR	35182481	35182513	.	-	.	Parent=Os02t0819500-01
Chr02	irgsp1_rep	CDS	35182345	35182480	.	-	0	Parent=Os02t0819500-01
Chr02	irgsp1_rep	CDS	35182167	35182253	.	-	2	Parent=Os02t0819500-01
Chr02	irgsp1_rep	CDS	35181953	35182086	.	-	2	Parent=Os02t0819500-01
Chr02	irgsp1_rep	CDS	35181081	35181154	.	-	0	Parent=Os02t0819500-01
Chr02	irgsp1_rep	CDS	35180802	35180856	.	-	1	Parent=Os02t0819500-01
Chr02	irgsp1_rep	CDS	35180461	35180535	.	-	0	Parent=Os02t0819500-01
Chr02	irgsp1_rep	CDS	35180287	35180360	.	-	0	Parent=Os02t0819500-01
Chr02	irgsp1_rep	CDS	35180144	35180192	.	-	1	Parent=Os02t0819500-01
Chr02	irgsp1_rep	CDS	35179940	35180024	.	-	0	Parent=Os02t0819500-01
Chr02	irgsp1_rep	CDS	35179783	35179839	.	-	2	Parent=Os02t0819500-01
Chr02	irgsp1_rep	CDS	35179549	35179625	.	-	2	Parent=Os02t0819500-01
Chr02	irgsp1_rep	three_prime_UTR	35179248	35179548	.	-	.	Parent=Os02t0819500-01
Chr02	irgsp1_rep	mRNA	35179147	35184143	.	-	.	ID=Os02t0819500-03;Name=Os02t0819500-03;Locus_id=Os02g0819500;Note=Ovarian tumour%2C otubain domain containing protein.;Transcript_evidence=AK105997 (DDBJ%2C Best hit);ORF_evidence=B6UH94 (UniProt);InterPro=Ovarian tumour%2C otubain (IPR003323);NIAS_FLcDNA=001-205-H07;Expression=AK105997;TENOR=Os02t0819500-03;KEGG=Os02t0819500-03
Chr02	irgsp1_rep	five_prime_UTR	35183762	35184143	.	-	.	Parent=Os02t0819500-03
Chr02	irgsp1_rep	five_prime_UTR	35183589	35183675	.	-	.	Parent=Os02t0819500-03
Chr02	irgsp1_rep	five_prime_UTR	35182481	35182513	.	-	.	Parent=Os02t0819500-03
Chr02	irgsp1_rep	CDS	35182345	35182480	.	-	0	Parent=Os02t0819500-03
Chr02	irgsp1_rep	CDS	35182167	35182253	.	-	2	Parent=Os02t0819500-03
Chr02	irgsp1_rep	CDS	35181953	35182086	.	-	2	Parent=Os02t0819500-03
Chr02	irgsp1_rep	CDS	35181081	35181154	.	-	0	Parent=Os02t0819500-03
Chr02	irgsp1_rep	CDS	35180802	35180856	.	-	1	Parent=Os02t0819500-03
Chr02	irgsp1_rep	CDS	35180461	35180535	.	-	0	Parent=Os02t0819500-03
Chr02	irgsp1_rep	CDS	35180287	35180360	.	-	0	Parent=Os02t0819500-03
Chr02	irgsp1_rep	CDS	35180201	35180207	.	-	1	Parent=Os02t0819500-03
Chr02	irgsp1_rep	three_prime_UTR	35180144	35180200	.	-	.	Parent=Os02t0819500-03
Chr02	irgsp1_rep	three_prime_UTR	35179940	35180024	.	-	.	Parent=Os02t0819500-03
Chr02	irgsp1_rep	three_prime_UTR	35179721	35179839	.	-	.	Parent=Os02t0819500-03
Chr02	irgsp1_rep	three_prime_UTR	35179147	35179625	.	-	.	Parent=Os02t0819500-03
Chr02	irgsp1_rep	mRNA	35179171	35180905	.	-	.	ID=Os02t0819500-04;Name=Os02t0819500-04;Locus_id=Os02g0819500;Note=Similar to Cysteine-type peptidase.;Transcript_evidence=AK058926 (DDBJ%2C Best hit);ORF_evidence=B6UH94 (UniProt);InterPro=Ovarian tumour%2C otubain (IPR003323);NIAS_FLcDNA=001-009-C03;Expression=AK058926;TENOR=Os02t0819500-04;KEGG=Os02t0819500-04
Chr02	irgsp1_rep	five_prime_UTR	35180865	35180905	.	-	.	Parent=Os02t0819500-04
Chr02	irgsp1_rep	CDS	35180802	35180864	.	-	0	Parent=Os02t0819500-04
Chr02	irgsp1_rep	CDS	35180461	35180535	.	-	0	Parent=Os02t0819500-04
Chr02	irgsp1_rep	CDS	35180287	35180360	.	-	0	Parent=Os02t0819500-04
Chr02	irgsp1_rep	CDS	35180075	35180192	.	-	1	Parent=Os02t0819500-04
Chr02	irgsp1_rep	three_prime_UTR	35179940	35180074	.	-	.	Parent=Os02t0819500-04
Chr02	irgsp1_rep	three_prime_UTR	35179721	35179839	.	-	.	Parent=Os02t0819500-04
Chr02	irgsp1_rep	three_prime_UTR	35179171	35179625	.	-	.	Parent=Os02t0819500-04
Chr02	irgsp1_rep	mRNA	35190631	35194311	.	-	.	ID=Os02t0819600-01;Name=Os02t0819600-01;Locus_id=Os02g0819600;CGSNL Gene Symbol=RLCK88;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 88;Oryzabase Gene Symbol Synonym(s)=OsRLCK88;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 88;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK062188 (DDBJ%2C Best hit);ORF_evidence=B6SRI6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-046-E07;Oryzabase=18799;TENOR=Os02t0819600-01
Chr02	irgsp1_rep	five_prime_UTR	35194119	35194311	.	-	.	Parent=Os02t0819600-01
Chr02	irgsp1_rep	five_prime_UTR	35193354	35193355	.	-	.	Parent=Os02t0819600-01
Chr02	irgsp1_rep	CDS	35192975	35193353	.	-	0	Parent=Os02t0819600-01
Chr02	irgsp1_rep	CDS	35192382	35192641	.	-	2	Parent=Os02t0819600-01
Chr02	irgsp1_rep	CDS	35192095	35192217	.	-	0	Parent=Os02t0819600-01
Chr02	irgsp1_rep	CDS	35190924	35191445	.	-	0	Parent=Os02t0819600-01
Chr02	irgsp1_rep	three_prime_UTR	35190631	35190923	.	-	.	Parent=Os02t0819600-01
Chr02	irgsp1_rep	mRNA	35190631	35194224	.	-	.	ID=Os02t0819600-02;Name=Os02t0819600-02;Locus_id=Os02g0819600;CGSNL Gene Symbol=RLCK88;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 88;Oryzabase Gene Symbol Synonym(s)=OsRLCK88;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 88;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK098868 (DDBJ%2C Best hit);ORF_evidence=B6SRI6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013001A15;Oryzabase=18799;TENOR=Os02t0819600-02
Chr02	irgsp1_rep	five_prime_UTR	35194119	35194224	.	-	.	Parent=Os02t0819600-02
Chr02	irgsp1_rep	five_prime_UTR	35193354	35193355	.	-	.	Parent=Os02t0819600-02
Chr02	irgsp1_rep	CDS	35192975	35193353	.	-	0	Parent=Os02t0819600-02
Chr02	irgsp1_rep	CDS	35192382	35192641	.	-	2	Parent=Os02t0819600-02
Chr02	irgsp1_rep	CDS	35192095	35192217	.	-	0	Parent=Os02t0819600-02
Chr02	irgsp1_rep	CDS	35190924	35191445	.	-	0	Parent=Os02t0819600-02
Chr02	irgsp1_rep	three_prime_UTR	35190631	35190923	.	-	.	Parent=Os02t0819600-02
Chr02	irgsp1_rep	mRNA	35190871	35191449	.	+	.	ID=Os02t0819650-00;Name=Os02t0819650-00;Locus_id=Os02g0819650;Note=Non-protein coding transcript.;Transcript_evidence=EU970220 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0819650-00
Chr02	irgsp1_rep	exon	35190871	35191449	.	+	.	Parent=Os02t0819650-00
Chr02	irgsp1_rep	mRNA	35199419	35200921	.	-	.	ID=Os02t0819700-01;Name=Os02t0819700-01;Locus_id=Os02g0819700;Note=Zinc finger%2C Zim17-type family protein.;Transcript_evidence=AK067374 (DDBJ%2C Best hit);ORF_evidence=B6TQA5 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C DNL-type (IPR007853),Mitochondrial import protein TIM15 (IPR024158);NIAS_FLcDNA=J013105L14;TENOR=Os02t0819700-01
Chr02	irgsp1_rep	five_prime_UTR	35200798	35200921	.	-	.	Parent=Os02t0819700-01
Chr02	irgsp1_rep	CDS	35200716	35200797	.	-	0	Parent=Os02t0819700-01
Chr02	irgsp1_rep	CDS	35199727	35200211	.	-	2	Parent=Os02t0819700-01
Chr02	irgsp1_rep	three_prime_UTR	35199419	35199726	.	-	.	Parent=Os02t0819700-01
Chr02	irgsp1_rep	mRNA	35199423	35200895	.	-	.	ID=Os02t0819700-02;Name=Os02t0819700-02;Locus_id=Os02g0819700;Note=Zinc finger%2C Zim17-type family protein.;Transcript_evidence=AK099160 (DDBJ%2C Best hit);ORF_evidence=B6TQA5 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C DNL-type (IPR007853),Mitochondrial import protein TIM15 (IPR024158);NIAS_FLcDNA=J023069I01;TENOR=Os02t0819700-02
Chr02	irgsp1_rep	five_prime_UTR	35200798	35200895	.	-	.	Parent=Os02t0819700-02
Chr02	irgsp1_rep	CDS	35200716	35200797	.	-	0	Parent=Os02t0819700-02
Chr02	irgsp1_rep	CDS	35199727	35200211	.	-	2	Parent=Os02t0819700-02
Chr02	irgsp1_rep	three_prime_UTR	35199423	35199726	.	-	.	Parent=Os02t0819700-02
Chr02	irgsp1_rep	mRNA	35205011	35206349	.	+	.	ID=Os02t0819900-00;Name=Os02t0819900-00;Locus_id=Os02g0819900;CGSNL Gene Symbol=RLCK89;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 89;Oryzabase Gene Symbol Synonym(s)=OsRLCK89;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 89;Note=Tyrosine protein kinase domain containing protein.;Transcript_evidence=AK358506 (DDBJ);ORF_evidence=NP_001147212.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);Oryzabase=18800;TENOR=Os02t0819900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	35205011	35206285	.	+	0	Parent=Os02t0819900-00
Chr02	irgsp1_rep	three_prime_UTR	35206286	35206349	.	+	.	Parent=Os02t0819900-00
Chr02	irgsp1_rep	mRNA	35207707	35211426	.	-	.	ID=Os02t0820000-01;Name=Os02t0820000-01;Locus_id=Os02g0820000;Oryzabase Gene Symbol Synonym(s)=OsPP41;Oryzabase Gene Name Synonym(s)=Protein phosphatase 41;Note=Similar to Serine/threonine protein phosphatase PP1 isozyme 2 (EC 3.1.3.16).;Transcript_evidence=AK120439 (DDBJ%2C Best hit);ORF_evidence=Q94F84 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Metallophosphoesterase domain (IPR004843),Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (IPR006186);NIAS_FLcDNA=J013098H20;Oryzabase=18634;Expression=AK120439;TENOR=Os02t0820000-01;KEGG=Os02t0820000-01 (EC:3.1.3.16)
Chr02	irgsp1_rep	five_prime_UTR	35211221	35211426	.	-	.	Parent=Os02t0820000-01
Chr02	irgsp1_rep	five_prime_UTR	35210984	35211029	.	-	.	Parent=Os02t0820000-01
Chr02	irgsp1_rep	CDS	35210806	35210983	.	-	0	Parent=Os02t0820000-01
Chr02	irgsp1_rep	CDS	35209311	35209870	.	-	2	Parent=Os02t0820000-01
Chr02	irgsp1_rep	CDS	35209028	35209222	.	-	0	Parent=Os02t0820000-01
Chr02	irgsp1_rep	CDS	35208028	35208045	.	-	0	Parent=Os02t0820000-01
Chr02	irgsp1_rep	three_prime_UTR	35207707	35208027	.	-	.	Parent=Os02t0820000-01
Chr02	irgsp1_rep	mRNA	35210917	35211512	.	+	.	ID=Os02t0820100-00;Name=Os02t0820100-00;Locus_id=Os02g0820100;Note=Hypothetical protein.;Transcript_evidence=FP092063 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0820100-00
Chr02	irgsp1_rep	five_prime_UTR	35210917	35211206	.	+	.	Parent=Os02t0820100-00
Chr02	irgsp1_rep	CDS	35211207	35211461	.	+	0	Parent=Os02t0820100-00
Chr02	irgsp1_rep	three_prime_UTR	35211462	35211512	.	+	.	Parent=Os02t0820100-00
Chr02	irgsp1_rep	mRNA	35216593	35217767	.	+	.	ID=Os02t0820200-01;Name=Os02t0820200-01;Locus_id=Os02g0820200;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK059979 (DDBJ%2C Best hit);ORF_evidence=B8AF42 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=006-212-D11;Expression=AK059979;TENOR=Os02t0820200-01;KEGG=Os02t0820200-01
Chr02	irgsp1_rep	five_prime_UTR	35216593	35216651	.	+	.	Parent=Os02t0820200-01
Chr02	irgsp1_rep	CDS	35216652	35217614	.	+	0	Parent=Os02t0820200-01
Chr02	irgsp1_rep	three_prime_UTR	35217615	35217767	.	+	.	Parent=Os02t0820200-01
Chr02	irgsp1_rep	mRNA	35218480	35221097	.	-	.	ID=Os02t0820300-01;Name=Os02t0820300-01;Locus_id=Os02g0820300;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK067708 (DDBJ%2C Best hit);ORF_evidence=NP_850163.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J013118H02;Expression=AK067708;TENOR=Os02t0820300-01;KEGG=Os02t0820300-01
Chr02	irgsp1_rep	five_prime_UTR	35220999	35221097	.	-	.	Parent=Os02t0820300-01
Chr02	irgsp1_rep	CDS	35219350	35220998	.	-	0	Parent=Os02t0820300-01
Chr02	irgsp1_rep	CDS	35218543	35218759	.	-	1	Parent=Os02t0820300-01
Chr02	irgsp1_rep	three_prime_UTR	35218480	35218542	.	-	.	Parent=Os02t0820300-01
Chr02	irgsp1_rep	mRNA	35222061	35223869	.	-	.	ID=Os02t0820400-01;Name=Os02t0820400-01;Locus_id=Os02g0820400;Note=Transferase family protein.;Transcript_evidence=AK100771 (DDBJ%2C Best hit);ORF_evidence=NP_001147570.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J023120A02;Expression=AK100771;TENOR=Os02t0820400-01;KEGG=Os02t0820400-01
Chr02	irgsp1_rep	five_prime_UTR	35223692	35223869	.	-	.	Parent=Os02t0820400-01
Chr02	irgsp1_rep	CDS	35222330	35223691	.	-	0	Parent=Os02t0820400-01
Chr02	irgsp1_rep	three_prime_UTR	35222061	35222329	.	-	.	Parent=Os02t0820400-01
Chr02	irgsp1_rep	mRNA	35222057	35223712	.	-	.	ID=Os02t0820400-02;Name=Os02t0820400-02;Locus_id=Os02g0820400;Note=Transferase family protein.;Transcript_evidence=AK060511 (DDBJ%2C Best hit);ORF_evidence=NP_001147570.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=001-019-D06;Expression=AK060511;TENOR=Os02t0820400-02;KEGG=Os02t0820400-02
Chr02	irgsp1_rep	five_prime_UTR	35223692	35223712	.	-	.	Parent=Os02t0820400-02
Chr02	irgsp1_rep	CDS	35222330	35223691	.	-	0	Parent=Os02t0820400-02
Chr02	irgsp1_rep	three_prime_UTR	35222057	35222329	.	-	.	Parent=Os02t0820400-02
Chr02	irgsp1_rep	mRNA	35227503	35228609	.	-	.	ID=Os02t0820500-01;Name=Os02t0820500-01;Locus_id=Os02g0820500;CGSNL Gene Symbol=DH1;CGSNL Gene Name=DEGENERATED HULL 1;Oryzabase Gene Symbol Synonym(s)=OsDH1%2C OsLBD2-1%2C LBD2-1%2C OsLOB16%2C LOB16;Oryzabase Gene Name Synonym(s)=degenerated hull1%2C lateral organ boundaries domain 2-1;Note=Similar to LOB domain protein 17.;Transcript_evidence=AK064187 (DDBJ%2C Best hit),AK103441 (DDBJ%2C Best hit);ORF_evidence=NP_565973.1 (RefSeq);InterPro=Lateral organ boundaries%2C LOB (IPR004883);NIAS_FLcDNA=002-104-C02,J033129D12;Oryzabase=8738;Expression=AK064187;TENOR=Os02t0820500-01;KEGG=Os02t0820500-01
Chr02	irgsp1_rep	five_prime_UTR	35228502	35228609	.	-	.	Parent=Os02t0820500-01
Chr02	irgsp1_rep	CDS	35228181	35228501	.	-	0	Parent=Os02t0820500-01
Chr02	irgsp1_rep	CDS	35227745	35228074	.	-	0	Parent=Os02t0820500-01
Chr02	irgsp1_rep	three_prime_UTR	35227503	35227744	.	-	.	Parent=Os02t0820500-01
Chr02	irgsp1_rep	mRNA	35230738	35233962	.	-	.	ID=Os02t0820600-01;Name=Os02t0820600-01;Locus_id=Os02g0820600;Note=Conserved hypothetical protein.;Transcript_evidence=AK066549 (DDBJ%2C Best hit);ORF_evidence=A2XB43 (UniProt);NIAS_FLcDNA=J013070F02;Expression=AK066549;TENOR=Os02t0820600-01;KEGG=Os02t0820600-01
Chr02	irgsp1_rep	five_prime_UTR	35233937	35233962	.	-	.	Parent=Os02t0820600-01
Chr02	irgsp1_rep	CDS	35233720	35233936	.	-	0	Parent=Os02t0820600-01
Chr02	irgsp1_rep	CDS	35232179	35232462	.	-	2	Parent=Os02t0820600-01
Chr02	irgsp1_rep	CDS	35231996	35232085	.	-	0	Parent=Os02t0820600-01
Chr02	irgsp1_rep	CDS	35231469	35231854	.	-	0	Parent=Os02t0820600-01
Chr02	irgsp1_rep	CDS	35231057	35231321	.	-	1	Parent=Os02t0820600-01
Chr02	irgsp1_rep	three_prime_UTR	35230738	35231056	.	-	.	Parent=Os02t0820600-01
Chr02	irgsp1_rep	mRNA	35234126	35237958	.	+	.	ID=Os02t0820700-01;Name=Os02t0820700-01;Locus_id=Os02g0820700;Note=Similar to BS14b.;Transcript_evidence=AK103008 (DDBJ%2C Best hit);ORF_evidence=B6TRA5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Target SNARE coiled-coil domain (IPR000727);NIAS_FLcDNA=J033116I15;Expression=AK103008;TENOR=Os02t0820700-01;KEGG=Os02t0820700-01
Chr02	irgsp1_rep	five_prime_UTR	35234126	35234402	.	+	.	Parent=Os02t0820700-01
Chr02	irgsp1_rep	five_prime_UTR	35234543	35234579	.	+	.	Parent=Os02t0820700-01
Chr02	irgsp1_rep	CDS	35234580	35234591	.	+	0	Parent=Os02t0820700-01
Chr02	irgsp1_rep	CDS	35236265	35236414	.	+	0	Parent=Os02t0820700-01
Chr02	irgsp1_rep	CDS	35237277	35237333	.	+	0	Parent=Os02t0820700-01
Chr02	irgsp1_rep	CDS	35237420	35237479	.	+	0	Parent=Os02t0820700-01
Chr02	irgsp1_rep	CDS	35237563	35237652	.	+	0	Parent=Os02t0820700-01
Chr02	irgsp1_rep	three_prime_UTR	35237653	35237958	.	+	.	Parent=Os02t0820700-01
Chr02	irgsp1_rep	mRNA	35234156	35238013	.	+	.	ID=Os02t0820700-02;Name=Os02t0820700-02;Locus_id=Os02g0820700;Note=Similar to BS14b.;Transcript_evidence=AK061365 (DDBJ%2C Best hit);ORF_evidence=B6TRA5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Target SNARE coiled-coil domain (IPR000727);NIAS_FLcDNA=006-304-D04;Expression=AK061365;TENOR=Os02t0820700-02;KEGG=Os02t0820700-02
Chr02	irgsp1_rep	five_prime_UTR	35234156	35234402	.	+	.	Parent=Os02t0820700-02
Chr02	irgsp1_rep	five_prime_UTR	35234543	35234579	.	+	.	Parent=Os02t0820700-02
Chr02	irgsp1_rep	CDS	35234580	35234591	.	+	0	Parent=Os02t0820700-02
Chr02	irgsp1_rep	CDS	35236265	35236414	.	+	0	Parent=Os02t0820700-02
Chr02	irgsp1_rep	CDS	35237277	35237333	.	+	0	Parent=Os02t0820700-02
Chr02	irgsp1_rep	CDS	35237420	35237479	.	+	0	Parent=Os02t0820700-02
Chr02	irgsp1_rep	CDS	35237563	35237652	.	+	0	Parent=Os02t0820700-02
Chr02	irgsp1_rep	three_prime_UTR	35237653	35238013	.	+	.	Parent=Os02t0820700-02
Chr02	irgsp1_rep	mRNA	35234156	35238024	.	+	.	ID=Os02t0820700-03;Name=Os02t0820700-03;Locus_id=Os02g0820700;Note=Similar to BS14b.;Transcript_evidence=AK060869 (DDBJ%2C Best hit),AK104724 (DDBJ%2C Best hit);ORF_evidence=B6TRA5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Target SNARE coiled-coil domain (IPR000727);NIAS_FLcDNA=001-034-H06,001-038-B06;TENOR=Os02t0820700-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	35234156	35234402	.	+	.	Parent=Os02t0820700-03
Chr02	irgsp1_rep	five_prime_UTR	35234543	35234579	.	+	.	Parent=Os02t0820700-03
Chr02	irgsp1_rep	CDS	35234580	35234591	.	+	0	Parent=Os02t0820700-03
Chr02	irgsp1_rep	CDS	35236277	35236414	.	+	0	Parent=Os02t0820700-03
Chr02	irgsp1_rep	CDS	35237277	35237333	.	+	0	Parent=Os02t0820700-03
Chr02	irgsp1_rep	CDS	35237420	35237479	.	+	0	Parent=Os02t0820700-03
Chr02	irgsp1_rep	CDS	35237563	35237652	.	+	0	Parent=Os02t0820700-03
Chr02	irgsp1_rep	three_prime_UTR	35237653	35238024	.	+	.	Parent=Os02t0820700-03
Chr02	irgsp1_rep	mRNA	35242169	35243851	.	+	.	ID=Os02t0820800-01;Name=Os02t0820800-01;Locus_id=Os02g0820800;RAP-DB Gene Symbol Synonym(s)=PTC2;RAP-DB Gene Name Synonym(s)=PERSISTENT TAPETAL CELL2;Note=AT-hook DNA binding protein%2C AHL family protein%2C Tapetal programmed cell death%2C Pollen wall development;Transcript_evidence=CT837915 (Guangluai4);ORF_evidence=Q6K709;InterPro=PPC domain (IPR005175);Manual Curation=November 29%2C 2019;Literature_PMID=31772077;TENOR=Os02t0820800-00;KEGG=Os02t0820800-00;Subcellular location=nucleus (GO:0005634)
Chr02	irgsp1_rep	five_prime_UTR	35242169	35242350	.	+	.	Parent=Os02t0820800-01
Chr02	irgsp1_rep	five_prime_UTR	35242605	35242641	.	+	.	Parent=Os02t0820800-01
Chr02	irgsp1_rep	CDS	35242642	35243442	.	+	0	Parent=Os02t0820800-01
Chr02	irgsp1_rep	three_prime_UTR	35243443	35243851	.	+	.	Parent=Os02t0820800-01
Chr02	irgsp1_rep	mRNA	35251581	35255089	.	+	.	ID=Os02t0820900-01;Name=Os02t0820900-01;Locus_id=Os02g0820900;CGSNL Gene Symbol=ETR3;CGSNL Gene Name=ETHYLENE RESPONSE 3;Oryzabase Gene Symbol Synonym(s)=OsETR3%2C OsERS4%2C OS-ETR3%2C OsETR3a%2C OsETR3b%2C PK2%2C OsPK2;Note=Similar to Ethylene receptor-like protein 2.;Transcript_evidence=AK111520 (DDBJ%2C Best hit);ORF_evidence=Q944U1 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: signal transduction (GO:0007165),Biological Process: ethylene mediated signaling pathway (GO:0009873),Biological Process: peptidyl-histidine phosphorylation (GO:0018106),Cellular Component: endoplasmic reticulum membrane (GO:0005789),Cellular Component: membrane (GO:0016020),Molecular Function: two-component sensor activity (GO:0000155),Molecular Function: two-component response regulator activity (GO:0000156),Molecular Function: protein histidine kinase activity (GO:0004673),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),GAF (IPR003018),ATPase-like%2C ATP-binding domain (IPR003594),Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain (IPR003661),Signal transduction histidine kinase%2C core (IPR005467),Signal transduction histidine kinase%2C homodimeric (IPR009082),CheY-like superfamily (IPR011006),Signal transduction histidine kinase%2C hybrid-type%2C ethylene sensor (IPR014525);NIAS_FLcDNA=J013002K22;Oryzabase=9856;TENOR=Os02t0820900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	35251581	35251643	.	+	.	Parent=Os02t0820900-01
Chr02	irgsp1_rep	five_prime_UTR	35251720	35251804	.	+	.	Parent=Os02t0820900-01
Chr02	irgsp1_rep	five_prime_UTR	35251933	35252001	.	+	.	Parent=Os02t0820900-01
Chr02	irgsp1_rep	five_prime_UTR	35252092	35252182	.	+	.	Parent=Os02t0820900-01
Chr02	irgsp1_rep	CDS	35252183	35252185	.	+	0	Parent=Os02t0820900-01
Chr02	irgsp1_rep	CDS	35252316	35254097	.	+	0	Parent=Os02t0820900-01
Chr02	irgsp1_rep	CDS	35254217	35254744	.	+	0	Parent=Os02t0820900-01
Chr02	irgsp1_rep	three_prime_UTR	35254745	35255089	.	+	.	Parent=Os02t0820900-01
Chr02	irgsp1_rep	mRNA	35252474	35255188	.	+	.	ID=Os02t0820900-02;Name=Os02t0820900-02;Locus_id=Os02g0820900;CGSNL Gene Symbol=ETR3;CGSNL Gene Name=ETHYLENE RESPONSE 3;Oryzabase Gene Symbol Synonym(s)=OsETR3%2C OsERS4%2C OS-ETR3%2C OsETR3a%2C OsETR3b%2C PK2%2C OsPK2;Note=Similar to Ethylene receptor-like protein 2.;Transcript_evidence=AK111581 (DDBJ%2C Best hit);ORF_evidence=Q944U1 (UniProt);GO=Biological Process: signal transduction (GO:0007165),Biological Process: peptidyl-histidine phosphorylation (GO:0018106),Cellular Component: membrane (GO:0016020),Molecular Function: two-component sensor activity (GO:0000155),Molecular Function: protein histidine kinase activity (GO:0004673),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=GAF (IPR003018),ATPase-like%2C ATP-binding domain (IPR003594),Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain (IPR003661),Signal transduction histidine kinase%2C core (IPR005467),Signal transduction histidine kinase%2C homodimeric (IPR009082);NIAS_FLcDNA=J013083A04;Oryzabase=9856;Expression=AK111581;TENOR=Os02t0820900-02;KEGG=Os02t0820900-02
Chr02	irgsp1_rep	five_prime_UTR	35252474	35252474	.	+	.	Parent=Os02t0820900-02
Chr02	irgsp1_rep	CDS	35252475	35254133	.	+	0	Parent=Os02t0820900-02
Chr02	irgsp1_rep	three_prime_UTR	35254134	35255188	.	+	.	Parent=Os02t0820900-02
Chr02	irgsp1_rep	mRNA	35252115	35254744	.	+	.	ID=Os02t0820900-03;Name=Os02t0820900-03;Locus_id=Os02g0820900;RAP-DB Gene Symbol Synonym(s)=ETR3%2C ETR3%2C OsETR3%2C OS-ETR3%2C OsETR3a%2C OsETR3b%2C OsPK2%2C PK2%2C OsERS4;RAP-DB Gene Name Synonym(s)=ETHYLENE RESPONSE 3%2C ETHYLENE RESPONSE3%2C subfamily I ethylene receptor;CGSNL Gene Symbol=ETR3;CGSNL Gene Name=ETHYLENE RESPONSE 3;Oryzabase Gene Symbol Synonym(s)=OsETR3%2C OsERS4%2C OS-ETR3%2C OsETR3a%2C OsETR3b%2C PK2%2C OsPK2;Note=Ethylene receptor%2C Ethylene response%2C Floral transition and starch accumulation;Transcript_evidence=AF420318 (Genbank);ORF_evidence=Q944U1 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: signal transduction (GO:0007165),Biological Process: peptidyl-histidine phosphorylation (GO:0018106),Cellular Component: membrane (GO:0016020),Molecular Function: two-component sensor activity (GO:0000155),Molecular Function: two-component response regulator activity (GO:0000156),Molecular Function: protein histidine kinase activity (GO:0004673),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),GAF domain (IPR003018),ATPase-like%2C ATP-binding domain (IPR003594),Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain (IPR003661),Signal transduction histidine kinase%2C core (IPR005467),Signal transduction histidine kinase%2C homodimeric (IPR009082),CheY-like superfamily (IPR011006);Manual Curation=June 1%2C 2009;Literature_PMID=19417056;Oryzabase=9856
Chr02	irgsp1_rep	CDS	35252115	35254097	.	+	0	Parent=Os02t0820900-03
Chr02	irgsp1_rep	CDS	35254217	35254744	.	+	0	Parent=Os02t0820900-03
Chr02	irgsp1_rep	mRNA	35255363	35256043	.	+	.	ID=Os02t0821100-01;Name=Os02t0821100-01;Locus_id=Os02g0821100;Note=Non-protein coding transcript.;Transcript_evidence=AK110928 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-173-D10;TENOR=Os02t0821100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	exon	35255363	35256043	.	+	.	Parent=Os02t0821100-01
Chr02	irgsp1_rep	mRNA	35256169	35257359	.	-	.	ID=Os02t0821200-01;Name=Os02t0821200-01;Locus_id=Os02g0821200;Note=Ribosomal protein L28e domain containing protein.;Transcript_evidence=AK062099 (DDBJ%2C Best hit);ORF_evidence=A6N0A1 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L28e (IPR002672);NIAS_FLcDNA=001-045-A03;Expression=AK062099;TENOR=Os02t0821200-01;KEGG=Os02t0821200-01
Chr02	irgsp1_rep	five_prime_UTR	35257358	35257359	.	-	.	Parent=Os02t0821200-01
Chr02	irgsp1_rep	CDS	35257208	35257357	.	-	0	Parent=Os02t0821200-01
Chr02	irgsp1_rep	CDS	35256557	35256685	.	-	0	Parent=Os02t0821200-01
Chr02	irgsp1_rep	three_prime_UTR	35256169	35256556	.	-	.	Parent=Os02t0821200-01
Chr02	irgsp1_rep	mRNA	35261577	35261775	.	+	.	ID=Os02t0821301-00;Name=Os02t0821301-00;Locus_id=Os02g0821301;Note=Non-protein coding transcript.;Transcript_evidence=EU947976 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0821301-00
Chr02	irgsp1_rep	exon	35261577	35261775	.	+	.	Parent=Os02t0821301-00
Chr02	irgsp1_rep	mRNA	35263294	35265393	.	-	.	ID=Os02t0821400-01;Name=Os02t0821400-01;Locus_id=Os02g0821400;CGSNL Gene Symbol=RLCK90;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 90;Oryzabase Gene Symbol Synonym(s)=OsRLCK90;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 90;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK112048 (DDBJ%2C Best hit);ORF_evidence=C6ZRW8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-100-D12;Oryzabase=18801;Expression=AK112048;TENOR=Os02t0821400-01;KEGG=Os02t0821400-01
Chr02	irgsp1_rep	five_prime_UTR	35265322	35265393	.	-	.	Parent=Os02t0821400-01
Chr02	irgsp1_rep	CDS	35265015	35265321	.	-	0	Parent=Os02t0821400-01
Chr02	irgsp1_rep	CDS	35264218	35264619	.	-	2	Parent=Os02t0821400-01
Chr02	irgsp1_rep	CDS	35263433	35264142	.	-	2	Parent=Os02t0821400-01
Chr02	irgsp1_rep	three_prime_UTR	35263294	35263432	.	-	.	Parent=Os02t0821400-01
Chr02	irgsp1_rep	mRNA	35263359	35265370	.	-	.	ID=Os02t0821400-02;Name=Os02t0821400-02;Locus_id=Os02g0821400;CGSNL Gene Symbol=RLCK90;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 90;Oryzabase Gene Symbol Synonym(s)=OsRLCK90;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 90;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK099147 (DDBJ%2C Best hit);ORF_evidence=C6ZRW8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023055C13;Oryzabase=18801;Expression=AK099147;TENOR=Os02t0821400-02;KEGG=Os02t0821400-02
Chr02	irgsp1_rep	five_prime_UTR	35265322	35265370	.	-	.	Parent=Os02t0821400-02
Chr02	irgsp1_rep	CDS	35265015	35265321	.	-	0	Parent=Os02t0821400-02
Chr02	irgsp1_rep	CDS	35264218	35264619	.	-	2	Parent=Os02t0821400-02
Chr02	irgsp1_rep	CDS	35263433	35264142	.	-	2	Parent=Os02t0821400-02
Chr02	irgsp1_rep	three_prime_UTR	35263359	35263432	.	-	.	Parent=Os02t0821400-02
Chr02	irgsp1_rep	mRNA	35267660	35270075	.	+	.	ID=Os02t0821600-00;Name=Os02t0821600-00;Locus_id=Os02g0821600;Note=Similar to mate efflux family protein.;Transcript_evidence=BT043311 (DDBJ);ORF_evidence=XP_002875033.1 (RefSeq);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);TENOR=Os02t0821600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	35267660	35268106	.	+	0	Parent=Os02t0821600-00
Chr02	irgsp1_rep	CDS	35268186	35268811	.	+	0	Parent=Os02t0821600-00
Chr02	irgsp1_rep	CDS	35269115	35269400	.	+	1	Parent=Os02t0821600-00
Chr02	irgsp1_rep	CDS	35269748	35269864	.	+	0	Parent=Os02t0821600-00
Chr02	irgsp1_rep	three_prime_UTR	35269865	35269866	.	+	.	Parent=Os02t0821600-00
Chr02	irgsp1_rep	three_prime_UTR	35269976	35270075	.	+	.	Parent=Os02t0821600-00
Chr02	irgsp1_rep	mRNA	35271599	35274767	.	+	.	ID=Os02t0821800-01;Name=Os02t0821800-01;Locus_id=Os02g0821800;Oryzabase Gene Symbol Synonym(s)=OsMed18_1%2C Med18_1%2C OsMed36_1%2C Med36_1;Oryzabase Gene Name Synonym(s)=Mediator 18_1%2C Mediator 36_1;Note=Similar to Fibrillarin-2.;Transcript_evidence=AK103477 (DDBJ%2C Best hit);ORF_evidence=B6T4G7 (UniProt);GO=Biological Process: rRNA processing (GO:0006364),Biological Process: tRNA processing (GO:0008033),Molecular Function: RNA binding (GO:0003723),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Fibrillarin (IPR000692),Fibrillarin%2C conserved site (IPR020813);NIAS_FLcDNA=J033130D23;Oryzabase=20978,20990;TENOR=Os02t0821800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	35271599	35271689	.	+	.	Parent=Os02t0821800-01
Chr02	irgsp1_rep	CDS	35271690	35271705	.	+	0	Parent=Os02t0821800-01
Chr02	irgsp1_rep	CDS	35271799	35272106	.	+	2	Parent=Os02t0821800-01
Chr02	irgsp1_rep	CDS	35272351	35272446	.	+	0	Parent=Os02t0821800-01
Chr02	irgsp1_rep	CDS	35272574	35272651	.	+	0	Parent=Os02t0821800-01
Chr02	irgsp1_rep	CDS	35272731	35272907	.	+	0	Parent=Os02t0821800-01
Chr02	irgsp1_rep	CDS	35273601	35273609	.	+	0	Parent=Os02t0821800-01
Chr02	irgsp1_rep	three_prime_UTR	35273610	35274313	.	+	.	Parent=Os02t0821800-01
Chr02	irgsp1_rep	three_prime_UTR	35274424	35274767	.	+	.	Parent=Os02t0821800-01
Chr02	irgsp1_rep	mRNA	35271805	35274777	.	+	.	ID=Os02t0821800-02;Name=Os02t0821800-02;Locus_id=Os02g0821800;Oryzabase Gene Symbol Synonym(s)=OsMed18_1%2C Med18_1%2C OsMed36_1%2C Med36_1;Oryzabase Gene Name Synonym(s)=Mediator 18_1%2C Mediator 36_1;Note=Similar to Fibrillarin-2.;Transcript_evidence=AK071291 (DDBJ%2C Best hit);ORF_evidence=B6T4G7 (UniProt);GO=Biological Process: rRNA processing (GO:0006364),Biological Process: tRNA processing (GO:0008033),Molecular Function: RNA binding (GO:0003723),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Fibrillarin (IPR000692),Fibrillarin%2C conserved site (IPR020813);NIAS_FLcDNA=J023088O08;Oryzabase=20978,20990;TENOR=Os02t0821800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	35271805	35271965	.	+	.	Parent=Os02t0821800-02
Chr02	irgsp1_rep	CDS	35271966	35272106	.	+	0	Parent=Os02t0821800-02
Chr02	irgsp1_rep	CDS	35272351	35272446	.	+	0	Parent=Os02t0821800-02
Chr02	irgsp1_rep	CDS	35272574	35272651	.	+	0	Parent=Os02t0821800-02
Chr02	irgsp1_rep	CDS	35272731	35272907	.	+	0	Parent=Os02t0821800-02
Chr02	irgsp1_rep	CDS	35274245	35274313	.	+	0	Parent=Os02t0821800-02
Chr02	irgsp1_rep	CDS	35274424	35274600	.	+	0	Parent=Os02t0821800-02
Chr02	irgsp1_rep	three_prime_UTR	35274601	35274777	.	+	.	Parent=Os02t0821800-02
Chr02	irgsp1_rep	mRNA	35272733	35274717	.	-	.	ID=Os02t0821850-00;Name=Os02t0821850-00;Locus_id=Os02g0821850;Note=Non-protein coding transcript.;Transcript_evidence=BT017129 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0821850-00
Chr02	irgsp1_rep	exon	35274430	35274717	.	-	.	Parent=Os02t0821850-00
Chr02	irgsp1_rep	exon	35274241	35274316	.	-	.	Parent=Os02t0821850-00
Chr02	irgsp1_rep	exon	35272733	35272903	.	-	.	Parent=Os02t0821850-00
Chr02	irgsp1_rep	mRNA	35275236	35278555	.	+	.	ID=Os02t0821900-01;Name=Os02t0821900-01;Locus_id=Os02g0821900;Note=Conserved hypothetical protein.;Transcript_evidence=AK071088 (DDBJ%2C Best hit);ORF_evidence=B8AF45 (UniProt);NIAS_FLcDNA=J023080K14;Expression=AK071088;TENOR=Os02t0821900-01;KEGG=Os02t0821900-01
Chr02	irgsp1_rep	five_prime_UTR	35275236	35275339	.	+	.	Parent=Os02t0821900-01
Chr02	irgsp1_rep	five_prime_UTR	35276330	35276333	.	+	.	Parent=Os02t0821900-01
Chr02	irgsp1_rep	CDS	35276334	35277107	.	+	0	Parent=Os02t0821900-01
Chr02	irgsp1_rep	CDS	35277897	35277998	.	+	0	Parent=Os02t0821900-01
Chr02	irgsp1_rep	three_prime_UTR	35277999	35278555	.	+	.	Parent=Os02t0821900-01
Chr02	irgsp1_rep	mRNA	35280533	35284210	.	+	.	ID=Os02t0822000-01;Name=Os02t0822000-01;Locus_id=Os02g0822000;Note=Conserved hypothetical protein.;Transcript_evidence=AK062205 (DDBJ%2C Best hit);ORF_evidence=B8AF46 (UniProt);NIAS_FLcDNA=001-046-H02;Expression=AK062205;TENOR=Os02t0822000-01;KEGG=Os02t0822000-01
Chr02	irgsp1_rep	five_prime_UTR	35280533	35280690	.	+	.	Parent=Os02t0822000-01
Chr02	irgsp1_rep	five_prime_UTR	35280711	35280812	.	+	.	Parent=Os02t0822000-01
Chr02	irgsp1_rep	five_prime_UTR	35281147	35281301	.	+	.	Parent=Os02t0822000-01
Chr02	irgsp1_rep	CDS	35281302	35281412	.	+	0	Parent=Os02t0822000-01
Chr02	irgsp1_rep	CDS	35282688	35283863	.	+	0	Parent=Os02t0822000-01
Chr02	irgsp1_rep	three_prime_UTR	35283864	35284210	.	+	.	Parent=Os02t0822000-01
Chr02	irgsp1_rep	mRNA	35280567	35284478	.	+	.	ID=Os02t0822000-02;Name=Os02t0822000-02;Locus_id=Os02g0822000;Note=Conserved hypothetical protein.;Transcript_evidence=AK071390 (DDBJ%2C Best hit);ORF_evidence=B8AF46 (UniProt);NIAS_FLcDNA=J023093H07;Expression=AK071390;TENOR=Os02t0822000-02;KEGG=Os02t0822000-02
Chr02	irgsp1_rep	five_prime_UTR	35280567	35280812	.	+	.	Parent=Os02t0822000-02
Chr02	irgsp1_rep	five_prime_UTR	35281147	35281301	.	+	.	Parent=Os02t0822000-02
Chr02	irgsp1_rep	CDS	35281302	35281412	.	+	0	Parent=Os02t0822000-02
Chr02	irgsp1_rep	CDS	35282688	35283863	.	+	0	Parent=Os02t0822000-02
Chr02	irgsp1_rep	three_prime_UTR	35283864	35284478	.	+	.	Parent=Os02t0822000-02
Chr02	irgsp1_rep	mRNA	35282880	35284446	.	+	.	ID=Os02t0822000-03;Name=Os02t0822000-03;Locus_id=Os02g0822000;Note=Hypothetical conserved gene.;Transcript_evidence=AK061760 (DDBJ%2C Best hit),AK106216 (DDBJ%2C Best hit);ORF_evidence=B8AF46 (UniProt);NIAS_FLcDNA=001-039-A12,001-208-H02;Expression=AK061760;TENOR=Os02t0822000-03;KEGG=Os02t0822000-03
Chr02	irgsp1_rep	CDS	35282880	35283863	.	+	0	Parent=Os02t0822000-03
Chr02	irgsp1_rep	three_prime_UTR	35283864	35284446	.	+	.	Parent=Os02t0822000-03
Chr02	irgsp1_rep	mRNA	35281301	35284066	.	-	.	ID=Os02t0822050-00;Name=Os02t0822050-00;Locus_id=Os02g0822050;Note=Hypothetical gene.;Transcript_evidence=AK333546 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0822050-00
Chr02	irgsp1_rep	five_prime_UTR	35282984	35284066	.	-	.	Parent=Os02t0822050-00
Chr02	irgsp1_rep	CDS	35282687	35282983	.	-	0	Parent=Os02t0822050-00
Chr02	irgsp1_rep	CDS	35281400	35281411	.	-	0	Parent=Os02t0822050-00
Chr02	irgsp1_rep	three_prime_UTR	35281301	35281399	.	-	.	Parent=Os02t0822050-00
Chr02	irgsp1_rep	mRNA	35286788	35290691	.	+	.	ID=Os02t0822100-01;Name=Os02t0822100-01;Locus_id=Os02g0822100;Oryzabase Gene Symbol Synonym(s)=SIET3;Oryzabase Gene Name Synonym(s)=silicon efflux transporter 3%2C Si efflux transporter 3;Note=Divalent ion symporter domain containing protein.;Transcript_evidence=AK065330 (DDBJ%2C Best hit);ORF_evidence=NP_001148124.1 (RefSeq);GO=Biological Process: citrate transport (GO:0015746),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: citrate transmembrane transporter activity (GO:0015137);InterPro=Divalent ion symporter (IPR004680);NIAS_FLcDNA=J013000A03;Oryzabase=19960;Expression=AK065330;TENOR=Os02t0822100-01;KEGG=Os02t0822100-01
Chr02	irgsp1_rep	five_prime_UTR	35286788	35287415	.	+	.	Parent=Os02t0822100-01
Chr02	irgsp1_rep	CDS	35287416	35288549	.	+	0	Parent=Os02t0822100-01
Chr02	irgsp1_rep	CDS	35289286	35289475	.	+	0	Parent=Os02t0822100-01
Chr02	irgsp1_rep	CDS	35290057	35290325	.	+	2	Parent=Os02t0822100-01
Chr02	irgsp1_rep	three_prime_UTR	35290326	35290691	.	+	.	Parent=Os02t0822100-01
Chr02	irgsp1_rep	mRNA	35287644	35290705	.	+	.	ID=Os02t0822100-02;Name=Os02t0822100-02;Locus_id=Os02g0822100;Oryzabase Gene Symbol Synonym(s)=SIET3;Oryzabase Gene Name Synonym(s)=silicon efflux transporter 3%2C Si efflux transporter 3;Note=Similar to arsenite transport subunit B.;Transcript_evidence=AK099610 (DDBJ%2C Best hit);ORF_evidence=NP_001148124.1 (RefSeq);GO=Biological Process: citrate transport (GO:0015746),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: citrate transmembrane transporter activity (GO:0015137);InterPro=Divalent ion symporter (IPR004680);NIAS_FLcDNA=J013049H16;Oryzabase=19960;TENOR=Os02t0822100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	35287644	35287664	.	+	.	Parent=Os02t0822100-02
Chr02	irgsp1_rep	CDS	35287665	35288549	.	+	0	Parent=Os02t0822100-02
Chr02	irgsp1_rep	CDS	35289286	35289475	.	+	0	Parent=Os02t0822100-02
Chr02	irgsp1_rep	CDS	35290057	35290325	.	+	2	Parent=Os02t0822100-02
Chr02	irgsp1_rep	three_prime_UTR	35290326	35290705	.	+	.	Parent=Os02t0822100-02
Chr02	irgsp1_rep	mRNA	35287416	35290326	.	-	.	ID=Os02t0822150-00;Name=Os02t0822150-00;Locus_id=Os02g0822150;Note=Hypothetical protein.;Transcript_evidence=tplb0042g05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0822150-00
Chr02	irgsp1_rep	five_prime_UTR	35290054	35290326	.	-	.	Parent=Os02t0822150-00
Chr02	irgsp1_rep	five_prime_UTR	35289305	35289472	.	-	.	Parent=Os02t0822150-00
Chr02	irgsp1_rep	five_prime_UTR	35288510	35288569	.	-	.	Parent=Os02t0822150-00
Chr02	irgsp1_rep	CDS	35288021	35288509	.	-	0	Parent=Os02t0822150-00
Chr02	irgsp1_rep	three_prime_UTR	35287416	35288020	.	-	.	Parent=Os02t0822150-00
Chr02	irgsp1_rep	mRNA	35293420	35296454	.	+	.	ID=Os02t0822200-01;Name=Os02t0822200-01;Locus_id=Os02g0822200;Note=Peptidase C12%2C ubiquitin carboxyl-terminal hydrolase 1 family protein.;Transcript_evidence=AK058380 (DDBJ%2C Best hit);ORF_evidence=NP_564858.1 (RefSeq);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Cellular Component: intracellular (GO:0005622),Molecular Function: ubiquitin thiolesterase activity (GO:0004221),Molecular Function: omega peptidase activity (GO:0008242);InterPro=Peptidase C12%2C ubiquitin carboxyl-terminal hydrolase 1 (IPR001578),Ubiquitinyl hydrolase%2C UCH37 type (IPR017390);NIAS_FLcDNA=001-014-H04;Expression=AK058380;TENOR=Os02t0822200-01;KEGG=Os02t0822200-01 (EC:3.4.19.12)
Chr02	irgsp1_rep	five_prime_UTR	35293420	35293541	.	+	.	Parent=Os02t0822200-01
Chr02	irgsp1_rep	five_prime_UTR	35293743	35293819	.	+	.	Parent=Os02t0822200-01
Chr02	irgsp1_rep	CDS	35293820	35293850	.	+	0	Parent=Os02t0822200-01
Chr02	irgsp1_rep	CDS	35294347	35294393	.	+	2	Parent=Os02t0822200-01
Chr02	irgsp1_rep	CDS	35295121	35295167	.	+	0	Parent=Os02t0822200-01
Chr02	irgsp1_rep	CDS	35295247	35295349	.	+	1	Parent=Os02t0822200-01
Chr02	irgsp1_rep	CDS	35295431	35296198	.	+	0	Parent=Os02t0822200-01
Chr02	irgsp1_rep	three_prime_UTR	35296199	35296454	.	+	.	Parent=Os02t0822200-01
Chr02	irgsp1_rep	mRNA	35293567	35296541	.	+	.	ID=Os02t0822200-02;Name=Os02t0822200-02;Locus_id=Os02g0822200;Note=Similar to UCH2%3B ubiquitin thiolesterase/ ubiquitin-specific protease.;Transcript_evidence=AK069150 (DDBJ%2C Best hit);ORF_evidence=NP_564858.1 (RefSeq);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Cellular Component: intracellular (GO:0005622),Molecular Function: ubiquitin thiolesterase activity (GO:0004221),Molecular Function: omega peptidase activity (GO:0008242);InterPro=Peptidase C12%2C ubiquitin carboxyl-terminal hydrolase 1 (IPR001578),Ubiquitinyl hydrolase%2C UCH37 type (IPR017390);NIAS_FLcDNA=J023004L19;TENOR=Os02t0822200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	35293567	35293850	.	+	.	Parent=Os02t0822200-02
Chr02	irgsp1_rep	five_prime_UTR	35294347	35295075	.	+	.	Parent=Os02t0822200-02
Chr02	irgsp1_rep	CDS	35295076	35295167	.	+	0	Parent=Os02t0822200-02
Chr02	irgsp1_rep	CDS	35295247	35295349	.	+	1	Parent=Os02t0822200-02
Chr02	irgsp1_rep	CDS	35295431	35296198	.	+	0	Parent=Os02t0822200-02
Chr02	irgsp1_rep	three_prime_UTR	35296199	35296541	.	+	.	Parent=Os02t0822200-02
Chr02	irgsp1_rep	mRNA	35297501	35302032	.	+	.	ID=Os02t0822300-00;Name=Os02t0822300-00;Locus_id=Os02g0822300;Note=Similar to RNA-binding protein Nova-1.;Transcript_evidence=AK366288 (DDBJ);ORF_evidence=B6UI46 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=K Homology (IPR004087),K Homology%2C type 1 (IPR004088),K Homology%2C type 1%2C subgroup (IPR018111);TENOR=Os02t0822300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	35297501	35297589	.	+	.	Parent=Os02t0822300-00
Chr02	irgsp1_rep	CDS	35297590	35297692	.	+	0	Parent=Os02t0822300-00
Chr02	irgsp1_rep	CDS	35299172	35299410	.	+	2	Parent=Os02t0822300-00
Chr02	irgsp1_rep	CDS	35299496	35299596	.	+	0	Parent=Os02t0822300-00
Chr02	irgsp1_rep	CDS	35299897	35300090	.	+	1	Parent=Os02t0822300-00
Chr02	irgsp1_rep	CDS	35300392	35300537	.	+	2	Parent=Os02t0822300-00
Chr02	irgsp1_rep	CDS	35301131	35301256	.	+	0	Parent=Os02t0822300-00
Chr02	irgsp1_rep	CDS	35301588	35301649	.	+	0	Parent=Os02t0822300-00
Chr02	irgsp1_rep	CDS	35301772	35301859	.	+	1	Parent=Os02t0822300-00
Chr02	irgsp1_rep	three_prime_UTR	35301860	35302032	.	+	.	Parent=Os02t0822300-00
Chr02	irgsp1_rep	mRNA	35303193	35307229	.	+	.	ID=Os02t0822400-01;Name=Os02t0822400-01;Locus_id=Os02g0822400;CGSNL Gene Symbol=NAC70;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 70;Oryzabase Gene Symbol Synonym(s)=ONAC070%2C ONAC70%2C OsNTL6%2C NTL6;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 070%2C NAC domain-containing protein 70%2C NAC membrane-bound transcription factor 6%2C NAC MTF6;Note=No apical meristem (NAM) protein domain containing protein.;Transcript_evidence=AK102173 (DDBJ%2C Best hit);ORF_evidence=Q84PC9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=J033086I18;Oryzabase=11495;Expression=AK102173;TENOR=Os02t0822400-01;KEGG=Os02t0822400-01
Chr02	irgsp1_rep	five_prime_UTR	35303193	35303478	.	+	.	Parent=Os02t0822400-01
Chr02	irgsp1_rep	CDS	35303479	35303955	.	+	0	Parent=Os02t0822400-01
Chr02	irgsp1_rep	CDS	35304529	35304759	.	+	0	Parent=Os02t0822400-01
Chr02	irgsp1_rep	CDS	35305410	35306072	.	+	0	Parent=Os02t0822400-01
Chr02	irgsp1_rep	CDS	35306205	35306313	.	+	0	Parent=Os02t0822400-01
Chr02	irgsp1_rep	CDS	35306472	35306890	.	+	2	Parent=Os02t0822400-01
Chr02	irgsp1_rep	three_prime_UTR	35306891	35307229	.	+	.	Parent=Os02t0822400-01
Chr02	irgsp1_rep	mRNA	35304649	35307257	.	+	.	ID=Os02t0822400-02;Name=Os02t0822400-02;Locus_id=Os02g0822400;CGSNL Gene Symbol=NAC70;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 70;Oryzabase Gene Symbol Synonym(s)=ONAC070%2C ONAC70%2C OsNTL6%2C NTL6;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 070%2C NAC domain-containing protein 70%2C NAC membrane-bound transcription factor 6%2C NAC MTF6;Note=Similar to NAC-like protein.;Transcript_evidence=AK062258 (DDBJ%2C Best hit);ORF_evidence=Q84PC9 (UniProt);NIAS_FLcDNA=001-047-G10;Oryzabase=11495;Expression=AK062258;TENOR=Os02t0822400-02;KEGG=Os02t0822400-02
Chr02	irgsp1_rep	CDS	35304649	35304759	.	+	0	Parent=Os02t0822400-02
Chr02	irgsp1_rep	CDS	35305410	35306072	.	+	0	Parent=Os02t0822400-02
Chr02	irgsp1_rep	CDS	35306205	35306313	.	+	0	Parent=Os02t0822400-02
Chr02	irgsp1_rep	CDS	35306472	35306890	.	+	2	Parent=Os02t0822400-02
Chr02	irgsp1_rep	three_prime_UTR	35306891	35307257	.	+	.	Parent=Os02t0822400-02
Chr02	irgsp1_rep	mRNA	35303332	35307200	.	-	.	ID=Os02t0822450-00;Name=Os02t0822450-00;Locus_id=Os02g0822450;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0041a01 (Wheat FLcDNA);ORF_evidence=NP_001183853.1 (RefSeq);TENOR=Os02t0822450-00
Chr02	irgsp1_rep	five_prime_UTR	35306392	35307200	.	-	.	Parent=Os02t0822450-00
Chr02	irgsp1_rep	five_prime_UTR	35305408	35306077	.	-	.	Parent=Os02t0822450-00
Chr02	irgsp1_rep	five_prime_UTR	35304754	35304770	.	-	.	Parent=Os02t0822450-00
Chr02	irgsp1_rep	CDS	35304526	35304753	.	-	0	Parent=Os02t0822450-00
Chr02	irgsp1_rep	CDS	35303332	35303952	.	-	0	Parent=Os02t0822450-00
Chr02	irgsp1_rep	mRNA	35307893	35313636	.	-	.	ID=Os02t0822500-01;Name=Os02t0822500-01;Locus_id=Os02g0822500;Note=Similar to Junctophilin-2 (Junctophilin type 2) (JP-2).;Transcript_evidence=AK073423 (DDBJ%2C Best hit);ORF_evidence=B6SXI7 (UniProt);GO=Biological Process: phosphatidylinositol metabolic process (GO:0046488),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphatidylinositol phosphate kinase activity (GO:0016307),Molecular Function: 1-phosphatidylinositol-4-phosphate 5-kinase activity (GO:0016308);InterPro=Phosphatidylinositol-4-phosphate 5-kinase%2C core (IPR002498),MORN motif (IPR003409),Phosphatidylinositol-4-phosphate 5-kinase%2C core%2C subgroup (IPR016034),Phosphatidylinositol-4-phosphate 5-kinase%2C plant (IPR017163),Phosphatidylinositol-4-phosphate 5-kinase (IPR023610);NIAS_FLcDNA=J033044H07;Expression=AK073423;TENOR=Os02t0822500-01;KEGG=Os02t0822500-01
Chr02	irgsp1_rep	five_prime_UTR	35313466	35313636	.	-	.	Parent=Os02t0822500-01
Chr02	irgsp1_rep	five_prime_UTR	35313290	35313331	.	-	.	Parent=Os02t0822500-01
Chr02	irgsp1_rep	five_prime_UTR	35312131	35312189	.	-	.	Parent=Os02t0822500-01
Chr02	irgsp1_rep	CDS	35310881	35312130	.	-	0	Parent=Os02t0822500-01
Chr02	irgsp1_rep	CDS	35310225	35310392	.	-	1	Parent=Os02t0822500-01
Chr02	irgsp1_rep	CDS	35309818	35309983	.	-	1	Parent=Os02t0822500-01
Chr02	irgsp1_rep	CDS	35309553	35309663	.	-	0	Parent=Os02t0822500-01
Chr02	irgsp1_rep	CDS	35309286	35309473	.	-	0	Parent=Os02t0822500-01
Chr02	irgsp1_rep	CDS	35308701	35308858	.	-	1	Parent=Os02t0822500-01
Chr02	irgsp1_rep	CDS	35308451	35308616	.	-	2	Parent=Os02t0822500-01
Chr02	irgsp1_rep	CDS	35308013	35308280	.	-	1	Parent=Os02t0822500-01
Chr02	irgsp1_rep	three_prime_UTR	35307893	35308012	.	-	.	Parent=Os02t0822500-01
Chr02	irgsp1_rep	mRNA	35310997	35313608	.	-	.	ID=Os02t0822500-02;Name=Os02t0822500-02;Locus_id=Os02g0822500;Note=Similar to predicted protein.;Transcript_evidence=AK065905 (DDBJ%2C Best hit);ORF_evidence=B6SXI7 (UniProt);InterPro=MORN motif (IPR003409),Phosphatidylinositol-4-phosphate 5-kinase (IPR023610);NIAS_FLcDNA=J013046I17;Expression=AK065905;TENOR=Os02t0822500-02;KEGG=Os02t0822500-02
Chr02	irgsp1_rep	five_prime_UTR	35313290	35313608	.	-	.	Parent=Os02t0822500-02
Chr02	irgsp1_rep	five_prime_UTR	35312131	35312189	.	-	.	Parent=Os02t0822500-02
Chr02	irgsp1_rep	CDS	35310997	35312130	.	-	0	Parent=Os02t0822500-02
Chr02	irgsp1_rep	mRNA	35307400	35313589	.	-	.	ID=Os02t0822500-03;Name=Os02t0822500-03;Locus_id=Os02g0822500;Note=Similar to Junctophilin-2 (Junctophilin type 2) (JP-2).;Transcript_evidence=AK072145 (DDBJ%2C Best hit);ORF_evidence=B6SXI7 (UniProt);GO=Biological Process: phosphatidylinositol metabolic process (GO:0046488),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphatidylinositol phosphate kinase activity (GO:0016307),Molecular Function: 1-phosphatidylinositol-4-phosphate 5-kinase activity (GO:0016308);InterPro=Phosphatidylinositol-4-phosphate 5-kinase%2C core (IPR002498),MORN motif (IPR003409),Phosphatidylinositol-4-phosphate 5-kinase%2C core%2C subgroup (IPR016034),Phosphatidylinositol-4-phosphate 5-kinase%2C plant (IPR017163),Phosphatidylinositol-4-phosphate 5-kinase (IPR023610);NIAS_FLcDNA=J013123O13;Expression=AK072145;TENOR=Os02t0822500-03;KEGG=Os02t0822500-03
Chr02	irgsp1_rep	five_prime_UTR	35313290	35313589	.	-	.	Parent=Os02t0822500-03
Chr02	irgsp1_rep	five_prime_UTR	35312131	35312189	.	-	.	Parent=Os02t0822500-03
Chr02	irgsp1_rep	CDS	35310881	35312130	.	-	0	Parent=Os02t0822500-03
Chr02	irgsp1_rep	CDS	35310225	35310392	.	-	1	Parent=Os02t0822500-03
Chr02	irgsp1_rep	CDS	35309818	35309983	.	-	1	Parent=Os02t0822500-03
Chr02	irgsp1_rep	CDS	35309553	35309663	.	-	0	Parent=Os02t0822500-03
Chr02	irgsp1_rep	CDS	35309286	35309473	.	-	0	Parent=Os02t0822500-03
Chr02	irgsp1_rep	CDS	35308701	35308858	.	-	1	Parent=Os02t0822500-03
Chr02	irgsp1_rep	CDS	35308451	35308616	.	-	2	Parent=Os02t0822500-03
Chr02	irgsp1_rep	CDS	35308013	35308280	.	-	1	Parent=Os02t0822500-03
Chr02	irgsp1_rep	three_prime_UTR	35307400	35308012	.	-	.	Parent=Os02t0822500-03
Chr02	irgsp1_rep	mRNA	35307514	35311920	.	-	.	ID=Os02t0822500-04;Name=Os02t0822500-04;Locus_id=Os02g0822500;Note=Hypothetical conserved gene.;Transcript_evidence=AK065823 (DDBJ%2C Best hit);ORF_evidence=A2XB57 (UniProt);GO=Biological Process: phosphatidylinositol metabolic process (GO:0046488),Molecular Function: phosphatidylinositol phosphate kinase activity (GO:0016307);InterPro=Phosphatidylinositol-4-phosphate 5-kinase%2C core (IPR002498),MORN motif (IPR003409),Phosphatidylinositol-4-phosphate 5-kinase%2C core%2C subgroup (IPR016034),Phosphatidylinositol-4-phosphate 5-kinase (IPR023610);NIAS_FLcDNA=J013041G06;Expression=AK065823;TENOR=Os02t0822500-04;KEGG=Os02t0822500-04 (EC:2.7.1.68)
Chr02	irgsp1_rep	CDS	35310881	35311920	.	-	0	Parent=Os02t0822500-04
Chr02	irgsp1_rep	CDS	35310225	35310392	.	-	1	Parent=Os02t0822500-04
Chr02	irgsp1_rep	CDS	35309800	35309983	.	-	1	Parent=Os02t0822500-04
Chr02	irgsp1_rep	three_prime_UTR	35309553	35309799	.	-	.	Parent=Os02t0822500-04
Chr02	irgsp1_rep	three_prime_UTR	35309286	35309473	.	-	.	Parent=Os02t0822500-04
Chr02	irgsp1_rep	three_prime_UTR	35308701	35308858	.	-	.	Parent=Os02t0822500-04
Chr02	irgsp1_rep	three_prime_UTR	35308451	35308616	.	-	.	Parent=Os02t0822500-04
Chr02	irgsp1_rep	three_prime_UTR	35307514	35308280	.	-	.	Parent=Os02t0822500-04
Chr02	irgsp1_rep	mRNA	35307512	35311393	.	-	.	ID=Os02t0822500-05;Name=Os02t0822500-05;Locus_id=Os02g0822500;Note=Similar to phosphatidylinositol-4-phosphate 5-kinase 9.;Transcript_evidence=AK101621 (DDBJ%2C Best hit);ORF_evidence=B6SXI7 (UniProt);InterPro=Phosphatidylinositol-4-phosphate 5-kinase (IPR023610);NIAS_FLcDNA=J033052J21;Expression=AK101621;TENOR=Os02t0822500-05;KEGG=Os02t0822500-05
Chr02	irgsp1_rep	five_prime_UTR	35311393	35311393	.	-	.	Parent=Os02t0822500-05
Chr02	irgsp1_rep	CDS	35310877	35311392	.	-	0	Parent=Os02t0822500-05
Chr02	irgsp1_rep	three_prime_UTR	35310225	35310876	.	-	.	Parent=Os02t0822500-05
Chr02	irgsp1_rep	three_prime_UTR	35309818	35309983	.	-	.	Parent=Os02t0822500-05
Chr02	irgsp1_rep	three_prime_UTR	35309553	35309663	.	-	.	Parent=Os02t0822500-05
Chr02	irgsp1_rep	three_prime_UTR	35309286	35309473	.	-	.	Parent=Os02t0822500-05
Chr02	irgsp1_rep	three_prime_UTR	35308701	35308858	.	-	.	Parent=Os02t0822500-05
Chr02	irgsp1_rep	three_prime_UTR	35308451	35308616	.	-	.	Parent=Os02t0822500-05
Chr02	irgsp1_rep	three_prime_UTR	35307512	35308280	.	-	.	Parent=Os02t0822500-05
Chr02	irgsp1_rep	mRNA	35320487	35322965	.	-	.	ID=Os02t0822600-01;Name=Os02t0822600-01;Locus_id=Os02g0822600;Note=Similar to 50S ribosomal protein L9.;Transcript_evidence=AK071751 (DDBJ%2C Best hit),AK058369 (DDBJ%2C Best hit),AK104610 (DDBJ%2C Best hit);ORF_evidence=NP_001151379.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L9 (IPR000244),Ribosomal protein L9/RNase H1%2C N-terminal (IPR009027),Ribosomal protein L9%2C C-terminal (IPR020069),Ribosomal protein L9%2C N-terminal (IPR020070),Ribosomal protein L9%2C bacteria/chloroplast (IPR020594);NIAS_FLcDNA=J023111I07,001-014-G04,006-309-C08;TENOR=Os02t0822600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	35322942	35322965	.	-	.	Parent=Os02t0822600-01
Chr02	irgsp1_rep	CDS	35322819	35322941	.	-	0	Parent=Os02t0822600-01
Chr02	irgsp1_rep	CDS	35322024	35322151	.	-	0	Parent=Os02t0822600-01
Chr02	irgsp1_rep	CDS	35321628	35321673	.	-	1	Parent=Os02t0822600-01
Chr02	irgsp1_rep	CDS	35321261	35321358	.	-	0	Parent=Os02t0822600-01
Chr02	irgsp1_rep	CDS	35321129	35321176	.	-	1	Parent=Os02t0822600-01
Chr02	irgsp1_rep	CDS	35320906	35321026	.	-	1	Parent=Os02t0822600-01
Chr02	irgsp1_rep	three_prime_UTR	35320840	35320905	.	-	.	Parent=Os02t0822600-01
Chr02	irgsp1_rep	three_prime_UTR	35320487	35320723	.	-	.	Parent=Os02t0822600-01
Chr02	irgsp1_rep	mRNA	35320316	35320575	.	-	.	ID=Os02t0822600-02;Name=Os02t0822600-02;Locus_id=Os02g0822600;Note=Non-protein coding transcript.;Transcript_evidence=AK060728 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-031-H06;TENOR=Os02t0822600-02
Chr02	irgsp1_rep	exon	35320316	35320575	.	-	.	Parent=Os02t0822600-02
Chr02	irgsp1_rep	mRNA	35325638	35331918	.	-	.	ID=Os02t0822800-01;Name=Os02t0822800-01;Locus_id=Os02g0822800;Note=Galactose oxidase/kelch%2C beta-propeller domain containing protein.;Transcript_evidence=AK068072 (DDBJ%2C Best hit);ORF_evidence=A2XB60 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Kelch repeat type 1 (IPR006652),Kelch repeat type 2 (IPR011498),Kelch-type beta propeller (IPR015915);NIAS_FLcDNA=J013131A18;Expression=AK068072;TENOR=Os02t0822800-01;KEGG=Os02t0822800-01
Chr02	irgsp1_rep	five_prime_UTR	35331728	35331918	.	-	.	Parent=Os02t0822800-01
Chr02	irgsp1_rep	CDS	35331617	35331727	.	-	0	Parent=Os02t0822800-01
Chr02	irgsp1_rep	CDS	35330662	35330739	.	-	0	Parent=Os02t0822800-01
Chr02	irgsp1_rep	CDS	35330454	35330573	.	-	0	Parent=Os02t0822800-01
Chr02	irgsp1_rep	CDS	35330276	35330345	.	-	0	Parent=Os02t0822800-01
Chr02	irgsp1_rep	CDS	35329517	35329578	.	-	2	Parent=Os02t0822800-01
Chr02	irgsp1_rep	CDS	35329250	35329389	.	-	0	Parent=Os02t0822800-01
Chr02	irgsp1_rep	CDS	35329041	35329167	.	-	1	Parent=Os02t0822800-01
Chr02	irgsp1_rep	CDS	35328466	35328580	.	-	0	Parent=Os02t0822800-01
Chr02	irgsp1_rep	CDS	35328291	35328379	.	-	2	Parent=Os02t0822800-01
Chr02	irgsp1_rep	CDS	35327773	35327856	.	-	0	Parent=Os02t0822800-01
Chr02	irgsp1_rep	CDS	35327226	35327549	.	-	0	Parent=Os02t0822800-01
Chr02	irgsp1_rep	CDS	35327084	35327143	.	-	0	Parent=Os02t0822800-01
Chr02	irgsp1_rep	CDS	35326791	35326969	.	-	0	Parent=Os02t0822800-01
Chr02	irgsp1_rep	CDS	35326059	35326059	.	-	1	Parent=Os02t0822800-01
Chr02	irgsp1_rep	three_prime_UTR	35325638	35326058	.	-	.	Parent=Os02t0822800-01
Chr02	irgsp1_rep	mRNA	35334956	35340821	.	+	.	ID=Os02t0822900-01;Name=Os02t0822900-01;Locus_id=Os02g0822900;CGSNL Gene Symbol=RLCK91;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 91;Oryzabase Gene Symbol Synonym(s)=OsPUB62%2C OsRLCK91;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 62%2C U-box protein 62%2C Receptor-like Cytoplasmic Kinase 91;Note=Hypothetical conserved gene.;Transcript_evidence=AK243658 (DDBJ%2C Best hit);ORF_evidence=B9F4K1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),U box domain (IPR003613),Protein kinase-like domain (IPR011009),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J100088O21;Oryzabase=17853;TENOR=Os02t0822900-01;KEGG=Os02t0822900-01
Chr02	irgsp1_rep	five_prime_UTR	35334956	35335219	.	+	.	Parent=Os02t0822900-01
Chr02	irgsp1_rep	CDS	35335220	35335475	.	+	0	Parent=Os02t0822900-01
Chr02	irgsp1_rep	CDS	35336569	35336690	.	+	2	Parent=Os02t0822900-01
Chr02	irgsp1_rep	CDS	35336868	35336989	.	+	0	Parent=Os02t0822900-01
Chr02	irgsp1_rep	CDS	35337158	35337262	.	+	1	Parent=Os02t0822900-01
Chr02	irgsp1_rep	CDS	35337909	35338272	.	+	1	Parent=Os02t0822900-01
Chr02	irgsp1_rep	CDS	35338688	35338828	.	+	0	Parent=Os02t0822900-01
Chr02	irgsp1_rep	CDS	35339126	35340616	.	+	0	Parent=Os02t0822900-01
Chr02	irgsp1_rep	three_prime_UTR	35340617	35340821	.	+	.	Parent=Os02t0822900-01
Chr02	irgsp1_rep	mRNA	35341752	35347359	.	+	.	ID=Os02t0823000-01;Name=Os02t0823000-01;Locus_id=Os02g0823000;Note=Peptidase A22B%2C signal peptide peptidase domain containing protein.;Transcript_evidence=AK122065 (DDBJ%2C Best hit);ORF_evidence=Q945B8 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Protease-associated domain%2C PA (IPR003137),Peptidase A22%2C presenilin signal peptide (IPR006639),Peptidase A22B%2C signal peptide peptidase (IPR007369);NIAS_FLcDNA=J033115L18;Expression=AK122065;TENOR=Os02t0823000-01;KEGG=Os02t0823000-01
Chr02	irgsp1_rep	five_prime_UTR	35341752	35341860	.	+	.	Parent=Os02t0823000-01
Chr02	irgsp1_rep	CDS	35341861	35342001	.	+	0	Parent=Os02t0823000-01
Chr02	irgsp1_rep	CDS	35342868	35343026	.	+	0	Parent=Os02t0823000-01
Chr02	irgsp1_rep	CDS	35343118	35343229	.	+	0	Parent=Os02t0823000-01
Chr02	irgsp1_rep	CDS	35343813	35343929	.	+	2	Parent=Os02t0823000-01
Chr02	irgsp1_rep	CDS	35344077	35344228	.	+	2	Parent=Os02t0823000-01
Chr02	irgsp1_rep	CDS	35344311	35344493	.	+	0	Parent=Os02t0823000-01
Chr02	irgsp1_rep	CDS	35345134	35345168	.	+	0	Parent=Os02t0823000-01
Chr02	irgsp1_rep	CDS	35345316	35345472	.	+	1	Parent=Os02t0823000-01
Chr02	irgsp1_rep	CDS	35345559	35345612	.	+	0	Parent=Os02t0823000-01
Chr02	irgsp1_rep	CDS	35345703	35345795	.	+	0	Parent=Os02t0823000-01
Chr02	irgsp1_rep	CDS	35345880	35346022	.	+	0	Parent=Os02t0823000-01
Chr02	irgsp1_rep	CDS	35346260	35346330	.	+	1	Parent=Os02t0823000-01
Chr02	irgsp1_rep	CDS	35346741	35346824	.	+	2	Parent=Os02t0823000-01
Chr02	irgsp1_rep	CDS	35346915	35347051	.	+	2	Parent=Os02t0823000-01
Chr02	irgsp1_rep	three_prime_UTR	35347052	35347359	.	+	.	Parent=Os02t0823000-01
Chr02	irgsp1_rep	mRNA	35341783	35347068	.	-	.	ID=Os02t0823050-00;Name=Os02t0823050-00;Locus_id=Os02g0823050;Note=Hypothetical protein.;Transcript_evidence=tplb0045c05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0823050-00
Chr02	irgsp1_rep	five_prime_UTR	35346902	35347068	.	-	.	Parent=Os02t0823050-00
Chr02	irgsp1_rep	five_prime_UTR	35346717	35346812	.	-	.	Parent=Os02t0823050-00
Chr02	irgsp1_rep	five_prime_UTR	35345900	35346076	.	-	.	Parent=Os02t0823050-00
Chr02	irgsp1_rep	five_prime_UTR	35345644	35345812	.	-	.	Parent=Os02t0823050-00
Chr02	irgsp1_rep	five_prime_UTR	35345294	35345469	.	-	.	Parent=Os02t0823050-00
Chr02	irgsp1_rep	five_prime_UTR	35344335	35344519	.	-	.	Parent=Os02t0823050-00
Chr02	irgsp1_rep	five_prime_UTR	35344159	35344251	.	-	.	Parent=Os02t0823050-00
Chr02	irgsp1_rep	CDS	35344046	35344158	.	-	0	Parent=Os02t0823050-00
Chr02	irgsp1_rep	CDS	35343821	35343910	.	-	1	Parent=Os02t0823050-00
Chr02	irgsp1_rep	CDS	35343136	35343235	.	-	1	Parent=Os02t0823050-00
Chr02	irgsp1_rep	three_prime_UTR	35343091	35343135	.	-	.	Parent=Os02t0823050-00
Chr02	irgsp1_rep	three_prime_UTR	35342857	35343001	.	-	.	Parent=Os02t0823050-00
Chr02	irgsp1_rep	three_prime_UTR	35341783	35341991	.	-	.	Parent=Os02t0823050-00
Chr02	irgsp1_rep	mRNA	35349673	35351221	.	+	.	ID=Os02t0823100-01;Name=Os02t0823100-01;Locus_id=Os02g0823100;RAP-DB Gene Symbol Synonym(s)=OsPIP1%3B3;RAP-DB Gene Name Synonym(s)=plasma membrane intrinsic protein 1%3B3;CGSNL Gene Symbol=PIP1%3B3;CGSNL Gene Name=PLASMA MEMBRANE INTRINSIC PROTEIN 1%3B3;Oryzabase Gene Symbol Synonym(s)=OsPIP1%3B3. PIP1.3%2C PIP1-3%2C RWC3%2C RWC-3%2C OsPIP1-3;Oryzabase Gene Name Synonym(s)=Aquaporin PIP 1.3%2C Aquaporin PIP 1-3%2C Plasma membrane intrinsic protein 1-3%2C Water channel protein RWC3%2C Aquaporin RWC3;Note=Plasma membrane intrinsic protein%2C Promotion of plant tolerance to water deficit and growth;Transcript_evidence=AK102174;ORF_evidence=Q9SXF8;GO=Biological Process: transmembrane transport (GO:0055085),Molecular Function: channel activity (GO:0015267),Cellular Component: membrane (GO:0016020);InterPro=Aquaporin-like (IPR023271),Major intrinsic protein (IPR000425),Major intrinsic protein%2C conserved site (IPR022357);NIAS_FLcDNA=J033086K14;Manual Curation=January 17%2C 2020;Literature_PMID=31872463;Oryzabase=8511;Expression=AK102174;TENOR=Os02t0823100-01;KEGG=Os02t0823100-01;Subcellular location=plasma membrane (GO:0005886) [co-expressed with OsPIP2%3B2]
Chr02	irgsp1_rep	five_prime_UTR	35349673	35349821	.	+	.	Parent=Os02t0823100-01
Chr02	irgsp1_rep	CDS	35349822	35350592	.	+	0	Parent=Os02t0823100-01
Chr02	irgsp1_rep	CDS	35350826	35350921	.	+	0	Parent=Os02t0823100-01
Chr02	irgsp1_rep	three_prime_UTR	35350922	35351221	.	+	.	Parent=Os02t0823100-01
Chr02	irgsp1_rep	mRNA	35355344	35356907	.	+	.	ID=Os02t0823200-00;Name=Os02t0823200-00;Locus_id=Os02g0823200;Note=Similar to OSIGBa0136O08-OSIGBa0153H12.4 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01HC0 (UniProt);InterPro=Histone deacetylase complex subunit SAP30/SAP30-like (IPR024145);TENOR=Os02t0823200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	35355344	35355538	.	+	0	Parent=Os02t0823200-00
Chr02	irgsp1_rep	CDS	35355850	35355997	.	+	0	Parent=Os02t0823200-00
Chr02	irgsp1_rep	CDS	35356096	35356211	.	+	2	Parent=Os02t0823200-00
Chr02	irgsp1_rep	CDS	35356497	35356628	.	+	0	Parent=Os02t0823200-00
Chr02	irgsp1_rep	CDS	35356776	35356907	.	+	0	Parent=Os02t0823200-00
Chr02	irgsp1_rep	mRNA	35362874	35368879	.	+	.	ID=Os02t0823300-01;Name=Os02t0823300-01;Locus_id=Os02g0823300;Oryzabase Gene Symbol Synonym(s)=OsRFP;Oryzabase Gene Name Synonym(s)=RING Finger Protein;Note=Similar to Neuralized protein.;Transcript_evidence=AK099915 (DDBJ%2C Best hit),AK069544 (DDBJ%2C Best hit);ORF_evidence=B8AF51 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J013116F10,J023022A15;Oryzabase=21085;Expression=AK099915;TENOR=Os02t0823300-01;KEGG=Os02t0823300-01
Chr02	irgsp1_rep	five_prime_UTR	35362874	35363132	.	+	.	Parent=Os02t0823300-01
Chr02	irgsp1_rep	CDS	35363133	35363993	.	+	0	Parent=Os02t0823300-01
Chr02	irgsp1_rep	CDS	35364074	35364198	.	+	0	Parent=Os02t0823300-01
Chr02	irgsp1_rep	CDS	35366358	35366957	.	+	1	Parent=Os02t0823300-01
Chr02	irgsp1_rep	CDS	35367057	35367348	.	+	1	Parent=Os02t0823300-01
Chr02	irgsp1_rep	CDS	35367706	35367871	.	+	0	Parent=Os02t0823300-01
Chr02	irgsp1_rep	CDS	35368171	35368273	.	+	2	Parent=Os02t0823300-01
Chr02	irgsp1_rep	CDS	35368373	35368490	.	+	1	Parent=Os02t0823300-01
Chr02	irgsp1_rep	three_prime_UTR	35368491	35368879	.	+	.	Parent=Os02t0823300-01
Chr02	irgsp1_rep	mRNA	35366383	35368733	.	+	.	ID=Os02t0823300-02;Name=Os02t0823300-02;Locus_id=Os02g0823300;Oryzabase Gene Symbol Synonym(s)=OsRFP;Oryzabase Gene Name Synonym(s)=RING Finger Protein;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=AK104995 (DDBJ%2C Best hit);ORF_evidence=B9F4K4 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=001-003-C12;Oryzabase=21085;TENOR=Os02t0823300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	35366383	35366957	.	+	0	Parent=Os02t0823300-02
Chr02	irgsp1_rep	CDS	35367057	35367348	.	+	1	Parent=Os02t0823300-02
Chr02	irgsp1_rep	CDS	35367706	35367871	.	+	0	Parent=Os02t0823300-02
Chr02	irgsp1_rep	CDS	35368171	35368273	.	+	2	Parent=Os02t0823300-02
Chr02	irgsp1_rep	CDS	35368373	35368490	.	+	1	Parent=Os02t0823300-02
Chr02	irgsp1_rep	three_prime_UTR	35368491	35368733	.	+	.	Parent=Os02t0823300-02
Chr02	irgsp1_rep	mRNA	35370515	35373519	.	+	.	ID=Os02t0823400-01;Name=Os02t0823400-01;Locus_id=Os02g0823400;CGSNL Gene Symbol=COMTL4;CGSNL Gene Name=CAFFEIC ACID 3-O-METHYLTRANSFERASE LIKE 4;Oryzabase Gene Symbol Synonym(s)=OsCOMTL4%2C COMT2;Oryzabase Gene Name Synonym(s)=caffeic acid O-methyltransferase 2;Note=Similar to S-adenosyl-L-methionine: beta-alanine N-methyltransferase (Fragment).;Transcript_evidence=AK105029 (DDBJ%2C Best hit);ORF_evidence=B6TG62 (UniProt);GO=Molecular Function: O-methyltransferase activity (GO:0008171);InterPro=O-methyltransferase%2C family 2 (IPR001077),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),O-methyltransferase%2C COMT%2C eukaryota (IPR016461);NIAS_FLcDNA=001-012-F05;Oryzabase=10444;Expression=AK105029;TENOR=Os02t0823400-01;KEGG=Os02t0823400-01
Chr02	irgsp1_rep	five_prime_UTR	35370515	35370601	.	+	.	Parent=Os02t0823400-01
Chr02	irgsp1_rep	CDS	35370602	35371104	.	+	0	Parent=Os02t0823400-01
Chr02	irgsp1_rep	CDS	35371197	35371426	.	+	1	Parent=Os02t0823400-01
Chr02	irgsp1_rep	CDS	35372857	35372921	.	+	2	Parent=Os02t0823400-01
Chr02	irgsp1_rep	CDS	35373110	35373409	.	+	0	Parent=Os02t0823400-01
Chr02	irgsp1_rep	three_prime_UTR	35373410	35373519	.	+	.	Parent=Os02t0823400-01
Chr02	irgsp1_rep	mRNA	35373524	35373726	.	+	.	ID=Os02t0823500-00;Name=Os02t0823500-00;Locus_id=Os02g0823500;Note=Non-protein coding transcript.;Transcript_evidence=U16257 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os02t0823500-00
Chr02	irgsp1_rep	exon	35373524	35373726	.	+	.	Parent=Os02t0823500-00
Chr02	irgsp1_rep	mRNA	35373539	35375819	.	-	.	ID=Os02t0823600-01;Name=Os02t0823600-01;Locus_id=Os02g0823600;Oryzabase Gene Symbol Synonym(s)=SR3;Oryzabase Gene Name Synonym(s)=sucrose repressed 3;Note=Conserved hypothetical protein.;Transcript_evidence=AK070498 (DDBJ%2C Best hit);ORF_evidence=B6SX58 (UniProt);NIAS_FLcDNA=J023051H09;Oryzabase=14318;Expression=AK070498;TENOR=Os02t0823600-01;KEGG=Os02t0823600-01
Chr02	irgsp1_rep	five_prime_UTR	35375722	35375819	.	-	.	Parent=Os02t0823600-01
Chr02	irgsp1_rep	CDS	35375719	35375721	.	-	0	Parent=Os02t0823600-01
Chr02	irgsp1_rep	CDS	35375517	35375594	.	-	0	Parent=Os02t0823600-01
Chr02	irgsp1_rep	CDS	35374088	35374180	.	-	0	Parent=Os02t0823600-01
Chr02	irgsp1_rep	CDS	35373773	35373856	.	-	0	Parent=Os02t0823600-01
Chr02	irgsp1_rep	three_prime_UTR	35373539	35373772	.	-	.	Parent=Os02t0823600-01
Chr02	irgsp1_rep	mRNA	35376562	35378825	.	-	.	ID=Os02t0823700-00;Name=Os02t0823700-00;Locus_id=Os02g0823700;CGSNL Gene Symbol=XTH22;CGSNL Gene Name=XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 22;Oryzabase Gene Symbol Synonym(s)=OsXTH22;Oryzabase Gene Name Synonym(s)=xyloglucan endotransglucosylase/hydrolase%2C xyloglucan endotransglucosylase 22;Note=Similar to Xyloglucan endotransglucosylase/hydrolase 9.;Transcript_evidence=CT835305 (DDBJ%2C Best hit);ORF_evidence=C5G5Y4 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: cellular glucan metabolic process (GO:0006073),Cellular Component: cell wall (GO:0005618),Cellular Component: apoplast (GO:0048046),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762);InterPro=Glycoside hydrolase%2C family 16 (IPR000757),Concanavalin A-like lectin/glucanase (IPR008985),Xyloglucan endo-transglycosylase%2C C-terminal (IPR010713),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Xyloglucan endotransglucosylase/hydrolase (IPR016455);Oryzabase=6503;TENOR=Os02t0823700-00;KEGG=Os02t0823700-00 (EC:2.4.1.207)
Chr02	irgsp1_rep	five_prime_UTR	35378758	35378825	.	-	.	Parent=Os02t0823700-00
Chr02	irgsp1_rep	CDS	35378189	35378757	.	-	0	Parent=Os02t0823700-00
Chr02	irgsp1_rep	CDS	35376735	35377149	.	-	1	Parent=Os02t0823700-00
Chr02	irgsp1_rep	three_prime_UTR	35376562	35376734	.	-	.	Parent=Os02t0823700-00
Chr02	irgsp1_rep	mRNA	35379378	35384497	.	+	.	ID=Os02t0823800-01;Name=Os02t0823800-01;Locus_id=Os02g0823800;Note=Smg8/Smg9 domain containing protein.;Transcript_evidence=AK120318 (DDBJ%2C Best hit);ORF_evidence=B9F4K6 (UniProt);InterPro=Smg8/Smg9 (IPR019354);NIAS_FLcDNA=J013056G01;Expression=AK120318;TENOR=Os02t0823800-01;KEGG=Os02t0823800-01
Chr02	irgsp1_rep	five_prime_UTR	35379378	35379454	.	+	.	Parent=Os02t0823800-01
Chr02	irgsp1_rep	CDS	35379455	35379805	.	+	0	Parent=Os02t0823800-01
Chr02	irgsp1_rep	CDS	35380444	35383245	.	+	0	Parent=Os02t0823800-01
Chr02	irgsp1_rep	CDS	35383333	35383384	.	+	0	Parent=Os02t0823800-01
Chr02	irgsp1_rep	CDS	35383590	35383849	.	+	2	Parent=Os02t0823800-01
Chr02	irgsp1_rep	three_prime_UTR	35383850	35383922	.	+	.	Parent=Os02t0823800-01
Chr02	irgsp1_rep	three_prime_UTR	35384010	35384205	.	+	.	Parent=Os02t0823800-01
Chr02	irgsp1_rep	three_prime_UTR	35384293	35384497	.	+	.	Parent=Os02t0823800-01
Chr02	irgsp1_rep	mRNA	35382953	35385150	.	+	.	ID=Os02t0823800-02;Name=Os02t0823800-02;Locus_id=Os02g0823800;Note=Hypothetical conserved gene.;Transcript_evidence=AK062275 (DDBJ%2C Best hit);ORF_evidence=B9F4K6 (UniProt);InterPro=Smg8/Smg9 (IPR019354);NIAS_FLcDNA=001-100-B03;Expression=AK062275;TENOR=Os02t0823800-02;KEGG=Os02t0823800-02
Chr02	irgsp1_rep	five_prime_UTR	35382953	35382954	.	+	.	Parent=Os02t0823800-02
Chr02	irgsp1_rep	CDS	35382955	35383245	.	+	0	Parent=Os02t0823800-02
Chr02	irgsp1_rep	CDS	35383333	35383384	.	+	0	Parent=Os02t0823800-02
Chr02	irgsp1_rep	CDS	35383590	35383849	.	+	2	Parent=Os02t0823800-02
Chr02	irgsp1_rep	three_prime_UTR	35383850	35383922	.	+	.	Parent=Os02t0823800-02
Chr02	irgsp1_rep	three_prime_UTR	35384010	35384205	.	+	.	Parent=Os02t0823800-02
Chr02	irgsp1_rep	three_prime_UTR	35384293	35384323	.	+	.	Parent=Os02t0823800-02
Chr02	irgsp1_rep	three_prime_UTR	35384654	35385150	.	+	.	Parent=Os02t0823800-02
Chr02	irgsp1_rep	mRNA	35389604	35390638	.	-	.	ID=Os02t0823900-00;Name=Os02t0823900-00;Locus_id=Os02g0823900;Oryzabase Gene Symbol Synonym(s)=OsSTA83%2C DLN72%2C OsDLN72;Oryzabase Gene Name Synonym(s)=DLN repressor 72%2C DLN motif protein 72;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6K9W9 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);Oryzabase=19381;TENOR=Os02t0823900-00;KEGG=Os02t0823900-00
Chr02	irgsp1_rep	CDS	35389604	35390638	.	-	0	Parent=Os02t0823900-00
Chr02	irgsp1_rep	mRNA	35390332	35390520	.	+	.	ID=Os02t0823950-00;Name=Os02t0823950-00;Locus_id=Os02g0823950;Note=Non-protein coding transcript.;Transcript_evidence=EU942014 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0823950-00
Chr02	irgsp1_rep	exon	35390332	35390520	.	+	.	Parent=Os02t0823950-00
Chr02	irgsp1_rep	mRNA	35400295	35403096	.	-	.	ID=Os02t0824000-00;Name=Os02t0824000-00;Locus_id=Os02g0824000;Note=Hypothetical conserved gene.;Transcript_evidence=AK368575 (DDBJ);ORF_evidence=NP_001048572.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os02t0824000-00;KEGG=Os02t0824000-00
Chr02	irgsp1_rep	CDS	35400295	35403096	.	-	0	Parent=Os02t0824000-00
Chr02	irgsp1_rep	mRNA	35409423	35411018	.	+	.	ID=Os02t0824100-00;Name=Os02t0824100-00;Locus_id=Os02g0824100;Note=CytoChrome P450 family protein.;Transcript_evidence=AK365211 (DDBJ);ORF_evidence=XP_002318814.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os02t0824100-00;KEGG=Os02t0824100-00
Chr02	irgsp1_rep	CDS	35409423	35411018	.	+	0	Parent=Os02t0824100-00
Chr02	irgsp1_rep	mRNA	35415323	35419464	.	-	.	ID=Os02t0824300-01;Name=Os02t0824300-01;Locus_id=Os02g0824300;Note=Protein of unknown function DUF296 domain containing protein.;Transcript_evidence=AK066031 (DDBJ%2C Best hit);ORF_evidence=NP_001151895.1 (RefSeq);GO=Molecular Function: DNA binding (GO:0003677);InterPro=Domain of unknown function DUF296 (IPR005175),AT hook%2C DNA-binding motif (IPR017956),AT hook-like (IPR020478);NIAS_FLcDNA=J013047F17;Expression=AK066031;TENOR=Os02t0824300-01;KEGG=Os02t0824300-01
Chr02	irgsp1_rep	five_prime_UTR	35418821	35419464	.	-	.	Parent=Os02t0824300-01
Chr02	irgsp1_rep	CDS	35418226	35418820	.	-	0	Parent=Os02t0824300-01
Chr02	irgsp1_rep	CDS	35417555	35417622	.	-	2	Parent=Os02t0824300-01
Chr02	irgsp1_rep	CDS	35416748	35416879	.	-	0	Parent=Os02t0824300-01
Chr02	irgsp1_rep	CDS	35416146	35416307	.	-	0	Parent=Os02t0824300-01
Chr02	irgsp1_rep	CDS	35415672	35415899	.	-	0	Parent=Os02t0824300-01
Chr02	irgsp1_rep	three_prime_UTR	35415323	35415671	.	-	.	Parent=Os02t0824300-01
Chr02	irgsp1_rep	mRNA	35415666	35416333	.	+	.	ID=Os02t0824350-00;Name=Os02t0824350-00;Locus_id=Os02g0824350;Note=Hypothetical gene.;Transcript_evidence=EU948829 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0824350-00
Chr02	irgsp1_rep	five_prime_UTR	35415666	35415929	.	+	.	Parent=Os02t0824350-00
Chr02	irgsp1_rep	CDS	35415930	35415969	.	+	0	Parent=Os02t0824350-00
Chr02	irgsp1_rep	CDS	35416160	35416333	.	+	2	Parent=Os02t0824350-00
Chr02	irgsp1_rep	mRNA	35421604	35423687	.	-	.	ID=Os02t0824400-01;Name=Os02t0824400-01;Locus_id=Os02g0824400;Note=Conserved hypothetical protein.;Transcript_evidence=AK121390 (DDBJ%2C Best hit);ORF_evidence=B8AF55 (UniProt);NIAS_FLcDNA=J023128P21;Expression=AK121390;TENOR=Os02t0824400-01;KEGG=Os02t0824400-01
Chr02	irgsp1_rep	five_prime_UTR	35423620	35423687	.	-	.	Parent=Os02t0824400-01
Chr02	irgsp1_rep	CDS	35423562	35423619	.	-	0	Parent=Os02t0824400-01
Chr02	irgsp1_rep	CDS	35423374	35423435	.	-	2	Parent=Os02t0824400-01
Chr02	irgsp1_rep	CDS	35421733	35421852	.	-	0	Parent=Os02t0824400-01
Chr02	irgsp1_rep	three_prime_UTR	35421604	35421732	.	-	.	Parent=Os02t0824400-01
Chr02	irgsp1_rep	mRNA	35424129	35425623	.	+	.	ID=Os02t0824500-01;Name=Os02t0824500-01;Locus_id=Os02g0824500;CGSNL Gene Symbol=REM1.1;CGSNL Gene Name=REMORIN 1.1;Oryzabase Gene Symbol Synonym(s)=OsREM1.1;Oryzabase Gene Name Synonym(s)=Remorin 1.1%2C remorin group 1 member 1;Note=Similar to Remorin.;Transcript_evidence=AK111296 (DDBJ%2C Best hit);ORF_evidence=NP_001159012.1 (RefSeq);InterPro=Remorin%2C C-terminal (IPR005516);NIAS_FLcDNA=002-181-A10;Oryzabase=20269;Expression=AK111296;TENOR=Os02t0824500-01;KEGG=Os02t0824500-01
Chr02	irgsp1_rep	five_prime_UTR	35424129	35424236	.	+	.	Parent=Os02t0824500-01
Chr02	irgsp1_rep	CDS	35424237	35424348	.	+	0	Parent=Os02t0824500-01
Chr02	irgsp1_rep	CDS	35424556	35424612	.	+	2	Parent=Os02t0824500-01
Chr02	irgsp1_rep	CDS	35424702	35424789	.	+	2	Parent=Os02t0824500-01
Chr02	irgsp1_rep	CDS	35424900	35424981	.	+	1	Parent=Os02t0824500-01
Chr02	irgsp1_rep	CDS	35425096	35425296	.	+	0	Parent=Os02t0824500-01
Chr02	irgsp1_rep	three_prime_UTR	35425297	35425623	.	+	.	Parent=Os02t0824500-01
Chr02	irgsp1_rep	mRNA	35426212	35427341	.	-	.	ID=Os02t0824600-00;Name=Os02t0824600-00;Locus_id=Os02g0824600;Note=Hypothetical conserved gene.;Transcript_evidence=EU973419 (DDBJ);ORF_evidence=Q6KAA5 (UniProt);TENOR=Os02t0824600-00;KEGG=Os02t0824600-00
Chr02	irgsp1_rep	CDS	35426932	35427341	.	-	0	Parent=Os02t0824600-00
Chr02	irgsp1_rep	CDS	35426212	35426653	.	-	1	Parent=Os02t0824600-00
Chr02	irgsp1_rep	mRNA	35427553	35430580	.	+	.	ID=Os02t0824700-01;Name=Os02t0824700-01;Locus_id=Os02g0824700;Note=Similar to Vacuolar ATP synthase subunit F (EC 3.6.3.14) (V-ATPase F subunit) (Vacuolar proton pump F subunit) (V-ATPase 14 kDa subunit).;Transcript_evidence=AK240995 (DDBJ%2C Best hit);ORF_evidence=A2XQ09 (UniProt);GO=Biological Process: ATP hydrolysis coupled proton transport (GO:0015991),Cellular Component: proton-transporting two-sector ATPase complex%2C catalytic domain (GO:0033178),Cellular Component: proton-transporting V-type ATPase%2C V1 domain (GO:0033180),Molecular Function: hydrogen ion transporting ATP synthase activity%2C rotational mechanism (GO:0046933),Molecular Function: proton-transporting ATPase activity%2C rotational mechanism (GO:0046961);InterPro=ATPase%2C V1 complex%2C subunit F%2C eukaryotic (IPR005772),ATPase%2C V1/A1 complex%2C subunit F (IPR008218);NIAS_FLcDNA=J065052N02;TENOR=Os02t0824700-01;KEGG=Os02t0824700-01 (EC:3.6.3.14)
Chr02	irgsp1_rep	five_prime_UTR	35427553	35427662	.	+	.	Parent=Os02t0824700-01
Chr02	irgsp1_rep	five_prime_UTR	35427859	35427876	.	+	.	Parent=Os02t0824700-01
Chr02	irgsp1_rep	CDS	35427877	35427939	.	+	0	Parent=Os02t0824700-01
Chr02	irgsp1_rep	CDS	35428732	35428813	.	+	0	Parent=Os02t0824700-01
Chr02	irgsp1_rep	CDS	35429447	35429529	.	+	2	Parent=Os02t0824700-01
Chr02	irgsp1_rep	CDS	35430198	35430362	.	+	0	Parent=Os02t0824700-01
Chr02	irgsp1_rep	three_prime_UTR	35430363	35430580	.	+	.	Parent=Os02t0824700-01
Chr02	irgsp1_rep	mRNA	35431036	35432639	.	+	.	ID=Os02t0824800-00;Name=Os02t0824800-00;Locus_id=Os02g0824800;Note=Hypothetical protein.;Transcript_evidence=tplb0033e11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0824800-00
Chr02	irgsp1_rep	five_prime_UTR	35431036	35431632	.	+	.	Parent=Os02t0824800-00
Chr02	irgsp1_rep	five_prime_UTR	35431762	35432238	.	+	.	Parent=Os02t0824800-00
Chr02	irgsp1_rep	CDS	35432239	35432619	.	+	0	Parent=Os02t0824800-00
Chr02	irgsp1_rep	three_prime_UTR	35432620	35432639	.	+	.	Parent=Os02t0824800-00
Chr02	irgsp1_rep	mRNA	35433664	35435812	.	-	.	ID=Os02t0824900-01;Name=Os02t0824900-01;Locus_id=Os02g0824900;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK103528 (DDBJ%2C Best hit);ORF_evidence=B9F4L1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810);NIAS_FLcDNA=J033131M21;Oryzabase=17576;TENOR=Os02t0824900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	35435555	35435812	.	-	.	Parent=Os02t0824900-01
Chr02	irgsp1_rep	CDS	35435519	35435554	.	-	0	Parent=Os02t0824900-01
Chr02	irgsp1_rep	CDS	35435002	35435256	.	-	0	Parent=Os02t0824900-01
Chr02	irgsp1_rep	three_prime_UTR	35434415	35435001	.	-	.	Parent=Os02t0824900-01
Chr02	irgsp1_rep	three_prime_UTR	35433664	35434296	.	-	.	Parent=Os02t0824900-01
Chr02	irgsp1_rep	mRNA	35433662	35435783	.	-	.	ID=Os02t0824900-02;Name=Os02t0824900-02;Locus_id=Os02g0824900;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK073217 (DDBJ%2C Best hit);ORF_evidence=B9F4L1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810);NIAS_FLcDNA=J033015J21;Oryzabase=17576;TENOR=Os02t0824900-02
Chr02	irgsp1_rep	five_prime_UTR	35435555	35435783	.	-	.	Parent=Os02t0824900-02
Chr02	irgsp1_rep	CDS	35435519	35435554	.	-	0	Parent=Os02t0824900-02
Chr02	irgsp1_rep	CDS	35435002	35435256	.	-	0	Parent=Os02t0824900-02
Chr02	irgsp1_rep	three_prime_UTR	35434415	35435001	.	-	.	Parent=Os02t0824900-02
Chr02	irgsp1_rep	three_prime_UTR	35433662	35434296	.	-	.	Parent=Os02t0824900-02
Chr02	irgsp1_rep	mRNA	35433749	35435099	.	+	.	ID=Os02t0825033-00;Name=Os02t0825033-00;Locus_id=Os02g0825033;Note=Hypothetical protein.;Transcript_evidence=tplb0042k12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0825033-00
Chr02	irgsp1_rep	five_prime_UTR	35433749	35434134	.	+	.	Parent=Os02t0825033-00
Chr02	irgsp1_rep	CDS	35434135	35434308	.	+	0	Parent=Os02t0825033-00
Chr02	irgsp1_rep	CDS	35434431	35434475	.	+	0	Parent=Os02t0825033-00
Chr02	irgsp1_rep	three_prime_UTR	35434476	35435099	.	+	.	Parent=Os02t0825033-00
Chr02	irgsp1_rep	mRNA	35437664	35439476	.	+	.	ID=Os02t0825166-00;Name=Os02t0825166-00;Locus_id=Os02g0825166;Note=Non-protein coding transcript.;Transcript_evidence=tplb0042k12 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os02t0825166-00
Chr02	irgsp1_rep	exon	35437664	35438271	.	+	.	Parent=Os02t0825166-00
Chr02	irgsp1_rep	exon	35438371	35439053	.	+	.	Parent=Os02t0825166-00
Chr02	irgsp1_rep	exon	35439274	35439476	.	+	.	Parent=Os02t0825166-00
Chr02	irgsp1_rep	mRNA	35440900	35442608	.	-	.	ID=Os02t0825301-00;Name=Os02t0825301-00;Locus_id=Os02g0825301;Oryzabase Gene Symbol Synonym(s)=OsFbox122%2C Os_F0288;Oryzabase Gene Name Synonym(s)=F-box protein 122;Note=Hypothetical conserved gene.;Transcript_evidence=FP092797 (DDBJ);ORF_evidence=B9F4L3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=16913;TENOR=Os02t0825301-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	35441550	35442608	.	-	0	Parent=Os02t0825301-00
Chr02	irgsp1_rep	CDS	35440926	35441462	.	-	0	Parent=Os02t0825301-00
Chr02	irgsp1_rep	three_prime_UTR	35440900	35440925	.	-	.	Parent=Os02t0825301-00
Chr02	irgsp1_rep	mRNA	35440926	35442493	.	+	.	ID=Os02t0825367-00;Name=Os02t0825367-00;Locus_id=Os02g0825367;Note=Hypothetical protein.;Transcript_evidence=tplb0031m24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0825367-00
Chr02	irgsp1_rep	five_prime_UTR	35440926	35441297	.	+	.	Parent=Os02t0825367-00
Chr02	irgsp1_rep	CDS	35441298	35441561	.	+	0	Parent=Os02t0825367-00
Chr02	irgsp1_rep	three_prime_UTR	35441562	35442493	.	+	.	Parent=Os02t0825367-00
Chr02	irgsp1_rep	mRNA	35447743	35449938	.	+	.	ID=Os02t0825500-01;Name=Os02t0825500-01;Locus_id=Os02g0825500;Oryzabase Gene Symbol Synonym(s)=OsFbox123%2C Os_F0289;Oryzabase Gene Name Synonym(s)=F-box protein 123;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK068122 (DDBJ%2C Best hit);ORF_evidence=A2XB79 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013135H15;Oryzabase=16914;Expression=AK068122;TENOR=Os02t0825500-01;KEGG=Os02t0825500-01
Chr02	irgsp1_rep	five_prime_UTR	35447743	35448050	.	+	.	Parent=Os02t0825500-01
Chr02	irgsp1_rep	CDS	35448051	35448086	.	+	0	Parent=Os02t0825500-01
Chr02	irgsp1_rep	CDS	35448198	35449097	.	+	0	Parent=Os02t0825500-01
Chr02	irgsp1_rep	CDS	35449202	35449738	.	+	0	Parent=Os02t0825500-01
Chr02	irgsp1_rep	three_prime_UTR	35449739	35449938	.	+	.	Parent=Os02t0825500-01
Chr02	irgsp1_rep	mRNA	35448228	35449814	.	-	.	ID=Os02t0825550-00;Name=Os02t0825550-00;Locus_id=Os02g0825550;Note=Non-protein coding transcript.;Transcript_evidence=tplb0042k12 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os02t0825550-00
Chr02	irgsp1_rep	exon	35449187	35449814	.	-	.	Parent=Os02t0825550-00
Chr02	irgsp1_rep	exon	35448228	35449081	.	-	.	Parent=Os02t0825550-00
Chr02	irgsp1_rep	mRNA	35452274	35459895	.	-	.	ID=Os02t0825600-01;Name=Os02t0825600-01;Locus_id=Os02g0825600;Note=Similar to signal peptide peptidase family protein.;Transcript_evidence=AK066738 (DDBJ%2C Best hit);ORF_evidence=XP_002875188.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A22B%2C signal peptide peptidase (IPR007369),Domain of unknown function DUF2215 (IPR024233);NIAS_FLcDNA=J013087I11;TENOR=Os02t0825600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	35459703	35459895	.	-	.	Parent=Os02t0825600-01
Chr02	irgsp1_rep	five_prime_UTR	35459278	35459455	.	-	.	Parent=Os02t0825600-01
Chr02	irgsp1_rep	five_prime_UTR	35458798	35458887	.	-	.	Parent=Os02t0825600-01
Chr02	irgsp1_rep	five_prime_UTR	35458553	35458689	.	-	.	Parent=Os02t0825600-01
Chr02	irgsp1_rep	five_prime_UTR	35458160	35458460	.	-	.	Parent=Os02t0825600-01
Chr02	irgsp1_rep	five_prime_UTR	35457717	35457850	.	-	.	Parent=Os02t0825600-01
Chr02	irgsp1_rep	five_prime_UTR	35457507	35457598	.	-	.	Parent=Os02t0825600-01
Chr02	irgsp1_rep	five_prime_UTR	35457371	35457413	.	-	.	Parent=Os02t0825600-01
Chr02	irgsp1_rep	five_prime_UTR	35457248	35457275	.	-	.	Parent=Os02t0825600-01
Chr02	irgsp1_rep	CDS	35457190	35457247	.	-	0	Parent=Os02t0825600-01
Chr02	irgsp1_rep	CDS	35456891	35457018	.	-	2	Parent=Os02t0825600-01
Chr02	irgsp1_rep	CDS	35456702	35456752	.	-	0	Parent=Os02t0825600-01
Chr02	irgsp1_rep	CDS	35455215	35455277	.	-	0	Parent=Os02t0825600-01
Chr02	irgsp1_rep	CDS	35455012	35455104	.	-	0	Parent=Os02t0825600-01
Chr02	irgsp1_rep	CDS	35454811	35454900	.	-	0	Parent=Os02t0825600-01
Chr02	irgsp1_rep	three_prime_UTR	35454697	35454810	.	-	.	Parent=Os02t0825600-01
Chr02	irgsp1_rep	three_prime_UTR	35454200	35454276	.	-	.	Parent=Os02t0825600-01
Chr02	irgsp1_rep	three_prime_UTR	35453442	35453505	.	-	.	Parent=Os02t0825600-01
Chr02	irgsp1_rep	three_prime_UTR	35452274	35452615	.	-	.	Parent=Os02t0825600-01
Chr02	irgsp1_rep	mRNA	35452188	35457306	.	-	.	ID=Os02t0825600-02;Name=Os02t0825600-02;Locus_id=Os02g0825600;Note=Peptidase A22B%2C signal peptide peptidase domain containing protein.;Transcript_evidence=AK070772 (DDBJ%2C Best hit);ORF_evidence=NP_001045686.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A22B%2C signal peptide peptidase (IPR007369);NIAS_FLcDNA=J023069C19;TENOR=Os02t0825600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	35457032	35457306	.	-	.	Parent=Os02t0825600-02
Chr02	irgsp1_rep	CDS	35456891	35457031	.	-	0	Parent=Os02t0825600-02
Chr02	irgsp1_rep	CDS	35456621	35456752	.	-	0	Parent=Os02t0825600-02
Chr02	irgsp1_rep	three_prime_UTR	35454697	35456620	.	-	.	Parent=Os02t0825600-02
Chr02	irgsp1_rep	three_prime_UTR	35452188	35453505	.	-	.	Parent=Os02t0825600-02
Chr02	irgsp1_rep	mRNA	35460664	35477612	.	-	.	ID=Os02t0825650-01;Name=Os02t0825650-01;Locus_id=Os02g0825650;Note=Hypothetical conserved gene.;Transcript_evidence=AK242370 (DDBJ%2C Best hit);ORF_evidence=NP_001173212.1 (RefSeq);NIAS_FLcDNA=J080036H03;Oryzabase=20000;TENOR=Os02t0825650-01;KEGG=Os02t0825650-01
Chr02	irgsp1_rep	five_prime_UTR	35477217	35477612	.	-	.	Parent=Os02t0825650-01
Chr02	irgsp1_rep	five_prime_UTR	35462106	35462106	.	-	.	Parent=Os02t0825650-01
Chr02	irgsp1_rep	CDS	35461976	35462105	.	-	0	Parent=Os02t0825650-01
Chr02	irgsp1_rep	CDS	35461824	35461880	.	-	2	Parent=Os02t0825650-01
Chr02	irgsp1_rep	CDS	35460885	35460976	.	-	2	Parent=Os02t0825650-01
Chr02	irgsp1_rep	three_prime_UTR	35460664	35460884	.	-	.	Parent=Os02t0825650-01
Chr02	irgsp1_rep	mRNA	35478791	35485406	.	-	.	ID=Os02t0825675-00;Name=Os02t0825675-00;Locus_id=Os02g0825675;Note=DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal domain containing protein.;Transcript_evidence=AK366679 (DDBJ);ORF_evidence=NP_001048584.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);TENOR=Os02t0825675-00
Chr02	irgsp1_rep	five_prime_UTR	35485239	35485406	.	-	.	Parent=Os02t0825675-00
Chr02	irgsp1_rep	CDS	35485005	35485238	.	-	0	Parent=Os02t0825675-00
Chr02	irgsp1_rep	CDS	35484659	35484796	.	-	0	Parent=Os02t0825675-00
Chr02	irgsp1_rep	CDS	35481075	35481140	.	-	0	Parent=Os02t0825675-00
Chr02	irgsp1_rep	three_prime_UTR	35480984	35481074	.	-	.	Parent=Os02t0825675-00
Chr02	irgsp1_rep	three_prime_UTR	35479942	35480140	.	-	.	Parent=Os02t0825675-00
Chr02	irgsp1_rep	three_prime_UTR	35479753	35479839	.	-	.	Parent=Os02t0825675-00
Chr02	irgsp1_rep	three_prime_UTR	35479095	35479186	.	-	.	Parent=Os02t0825675-00
Chr02	irgsp1_rep	three_prime_UTR	35478791	35479010	.	-	.	Parent=Os02t0825675-00
Chr02	irgsp1_rep	mRNA	35481944	35483956	.	-	.	ID=Os02t0825700-01;Name=Os02t0825700-01;Locus_id=Os02g0825700;Oryzabase Gene Symbol Synonym(s)=OsFbox124%2C Os_F0262;Oryzabase Gene Name Synonym(s)=F-box protein 124;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK073445 (DDBJ%2C Best hit);ORF_evidence=B9F4L1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033044N10;Oryzabase=16915;TENOR=Os02t0825700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	35483602	35483956	.	-	.	Parent=Os02t0825700-01
Chr02	irgsp1_rep	CDS	35483008	35483601	.	-	0	Parent=Os02t0825700-01
Chr02	irgsp1_rep	three_prime_UTR	35481944	35483007	.	-	.	Parent=Os02t0825700-01
Chr02	irgsp1_rep	mRNA	35482017	35483543	.	+	.	ID=Os02t0825850-00;Name=Os02t0825850-00;Locus_id=Os02g0825850;Note=Hypothetical protein.;Transcript_evidence=tplb0047d11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0825850-00
Chr02	irgsp1_rep	five_prime_UTR	35482017	35482393	.	+	.	Parent=Os02t0825850-00
Chr02	irgsp1_rep	CDS	35482394	35482556	.	+	0	Parent=Os02t0825850-00
Chr02	irgsp1_rep	CDS	35482646	35482713	.	+	2	Parent=Os02t0825850-00
Chr02	irgsp1_rep	three_prime_UTR	35482714	35483543	.	+	.	Parent=Os02t0825850-00
Chr02	irgsp1_rep	mRNA	35497369	35500901	.	-	.	ID=Os02t0826000-00;Name=Os02t0826000-00;Locus_id=Os02g0826000;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001048583.2 (RefSeq);TENOR=Os02t0826000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	35500599	35500901	.	-	0	Parent=Os02t0826000-00
Chr02	irgsp1_rep	CDS	35499987	35500516	.	-	0	Parent=Os02t0826000-00
Chr02	irgsp1_rep	CDS	35498846	35499659	.	-	1	Parent=Os02t0826000-00
Chr02	irgsp1_rep	CDS	35498229	35498758	.	-	0	Parent=Os02t0826000-00
Chr02	irgsp1_rep	CDS	35497589	35497676	.	-	1	Parent=Os02t0826000-00
Chr02	irgsp1_rep	CDS	35497369	35497488	.	-	0	Parent=Os02t0826000-00
Chr02	irgsp1_rep	mRNA	35498148	35499676	.	+	.	ID=Os02t0826016-00;Name=Os02t0826016-00;Locus_id=Os02g0826016;Note=Hypothetical protein.;Transcript_evidence=tplb0042k12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0826016-00
Chr02	irgsp1_rep	five_prime_UTR	35498148	35498769	.	+	.	Parent=Os02t0826016-00
Chr02	irgsp1_rep	five_prime_UTR	35498859	35499322	.	+	.	Parent=Os02t0826016-00
Chr02	irgsp1_rep	CDS	35499323	35499607	.	+	0	Parent=Os02t0826016-00
Chr02	irgsp1_rep	three_prime_UTR	35499608	35499676	.	+	.	Parent=Os02t0826016-00
Chr02	irgsp1_rep	mRNA	35499918	35501480	.	+	.	ID=Os02t0826032-00;Name=Os02t0826032-00;Locus_id=Os02g0826032;Note=Hypothetical protein.;Transcript_evidence=tplb0042k12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0826032-00
Chr02	irgsp1_rep	five_prime_UTR	35499918	35500528	.	+	.	Parent=Os02t0826032-00
Chr02	irgsp1_rep	five_prime_UTR	35500615	35500632	.	+	.	Parent=Os02t0826032-00
Chr02	irgsp1_rep	CDS	35500633	35500896	.	+	0	Parent=Os02t0826032-00
Chr02	irgsp1_rep	three_prime_UTR	35500897	35501480	.	+	.	Parent=Os02t0826032-00
Chr02	irgsp1_rep	mRNA	35501040	35501778	.	-	.	ID=Os02t0826050-00;Name=Os02t0826050-00;Locus_id=Os02g0826050;Oryzabase Gene Symbol Synonym(s)=Os_F0240;Note=Similar to cDNA clone:J033044N10%2C full insert sequence.;Transcript_evidence=ab initio prediction;ORF_evidence=B7EM62 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17504;TENOR=Os02t0826050-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	35501743	35501778	.	-	0	Parent=Os02t0826050-00
Chr02	irgsp1_rep	CDS	35501040	35501516	.	-	0	Parent=Os02t0826050-00
Chr02	irgsp1_rep	mRNA	35502083	35507042	.	-	.	ID=Os02t0826100-01;Name=Os02t0826100-01;Locus_id=Os02g0826100;Oryzabase Gene Symbol Synonym(s)=OsRH48;Oryzabase Gene Name Synonym(s)=RNA helicase 48;Note=Similar to RNA helicase (Fragment).;Transcript_evidence=AK101090 (DDBJ%2C Best hit);ORF_evidence=B9F4M0 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=J033024M11;Oryzabase=19155;Expression=AK101090;TENOR=Os02t0826100-01;KEGG=Os02t0826100-01
Chr02	irgsp1_rep	five_prime_UTR	35506978	35507042	.	-	.	Parent=Os02t0826100-01
Chr02	irgsp1_rep	CDS	35505950	35506977	.	-	0	Parent=Os02t0826100-01
Chr02	irgsp1_rep	CDS	35505516	35505622	.	-	1	Parent=Os02t0826100-01
Chr02	irgsp1_rep	CDS	35505250	35505305	.	-	2	Parent=Os02t0826100-01
Chr02	irgsp1_rep	CDS	35504933	35505157	.	-	0	Parent=Os02t0826100-01
Chr02	irgsp1_rep	CDS	35504632	35504838	.	-	0	Parent=Os02t0826100-01
Chr02	irgsp1_rep	CDS	35504443	35504529	.	-	0	Parent=Os02t0826100-01
Chr02	irgsp1_rep	CDS	35503844	35503939	.	-	0	Parent=Os02t0826100-01
Chr02	irgsp1_rep	CDS	35503547	35503762	.	-	0	Parent=Os02t0826100-01
Chr02	irgsp1_rep	CDS	35503203	35503385	.	-	0	Parent=Os02t0826100-01
Chr02	irgsp1_rep	CDS	35502240	35502470	.	-	0	Parent=Os02t0826100-01
Chr02	irgsp1_rep	three_prime_UTR	35502083	35502239	.	-	.	Parent=Os02t0826100-01
Chr02	irgsp1_rep	mRNA	35507201	35510876	.	+	.	ID=Os02t0826200-01;Name=Os02t0826200-01;Locus_id=Os02g0826200;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK070787 (DDBJ%2C Best hit);ORF_evidence=B6TQB4 (UniProt);GO=Biological Process: extracellular polysaccharide biosynthetic process (GO:0045226),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: dTDP-4-dehydrorhamnose reductase activity (GO:0008831);InterPro=dTDP-4-dehydrorhamnose reductase (IPR005913),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023067C07;Expression=AK070787;TENOR=Os02t0826200-01;KEGG=Os02t0826200-01
Chr02	irgsp1_rep	five_prime_UTR	35507201	35507210	.	+	.	Parent=Os02t0826200-01
Chr02	irgsp1_rep	CDS	35507211	35507429	.	+	0	Parent=Os02t0826200-01
Chr02	irgsp1_rep	CDS	35508934	35509093	.	+	0	Parent=Os02t0826200-01
Chr02	irgsp1_rep	CDS	35509324	35509511	.	+	2	Parent=Os02t0826200-01
Chr02	irgsp1_rep	CDS	35509660	35509783	.	+	0	Parent=Os02t0826200-01
Chr02	irgsp1_rep	CDS	35509930	35510060	.	+	2	Parent=Os02t0826200-01
Chr02	irgsp1_rep	CDS	35510516	35510647	.	+	0	Parent=Os02t0826200-01
Chr02	irgsp1_rep	three_prime_UTR	35510648	35510876	.	+	.	Parent=Os02t0826200-01
Chr02	irgsp1_rep	mRNA	35513023	35513771	.	+	.	ID=Os02t0826300-01;Name=Os02t0826300-01;Locus_id=Os02g0826300;Oryzabase Gene Symbol Synonym(s)=OsCLE206%2C CLE206;Oryzabase Gene Name Synonym(s)=CLV3/ESR-related 206%2C CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 206;Note=Conserved hypothetical protein.;Transcript_evidence=AK241845 (DDBJ%2C Best hit);ORF_evidence=NP_001173213.1 (RefSeq);NIAS_FLcDNA=J065214G11;Oryzabase=14227;TENOR=Os02t0826300-01;KEGG=Os02t0826300-01
Chr02	irgsp1_rep	five_prime_UTR	35513023	35513071	.	+	.	Parent=Os02t0826300-01
Chr02	irgsp1_rep	CDS	35513072	35513341	.	+	0	Parent=Os02t0826300-01
Chr02	irgsp1_rep	three_prime_UTR	35513342	35513771	.	+	.	Parent=Os02t0826300-01
Chr02	irgsp1_rep	mRNA	35516584	35517114	.	-	.	ID=Os02t0826400-00;Name=Os02t0826400-00;Locus_id=Os02g0826400;Note=Conserved hypothetical protein.;Transcript_evidence=CT835419 (DDBJ%2C Best hit);ORF_evidence=A6MZB1 (UniProt);TENOR=Os02t0826400-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	35516791	35517114	.	-	0	Parent=Os02t0826400-00
Chr02	irgsp1_rep	three_prime_UTR	35516584	35516790	.	-	.	Parent=Os02t0826400-00
Chr02	irgsp1_rep	mRNA	35517553	35523358	.	-	.	ID=Os02t0826500-01;Name=Os02t0826500-01;Locus_id=Os02g0826500;CGSNL Gene Symbol=ABCF1;CGSNL Gene Name=ABC TRANSPORTER F FAMILY MEMBER 1;Oryzabase Gene Symbol Synonym(s)=OsABCF1%2C OsABCF1_1%2C OsABCF1_2%2C OsABCF1_3;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCF subgroup member 1;Note=ABC transporter-like domain containing protein.;Transcript_evidence=AK100809 (DDBJ%2C Best hit);ORF_evidence=Q6K7R4 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=J023121N24;Oryzabase=11975;TENOR=Os02t0826500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	35523268	35523358	.	-	.	Parent=Os02t0826500-01
Chr02	irgsp1_rep	CDS	35523043	35523267	.	-	0	Parent=Os02t0826500-01
Chr02	irgsp1_rep	CDS	35522199	35522414	.	-	0	Parent=Os02t0826500-01
Chr02	irgsp1_rep	CDS	35521824	35522013	.	-	0	Parent=Os02t0826500-01
Chr02	irgsp1_rep	CDS	35521266	35521474	.	-	2	Parent=Os02t0826500-01
Chr02	irgsp1_rep	CDS	35521013	35521171	.	-	0	Parent=Os02t0826500-01
Chr02	irgsp1_rep	CDS	35520576	35520704	.	-	0	Parent=Os02t0826500-01
Chr02	irgsp1_rep	CDS	35520407	35520508	.	-	0	Parent=Os02t0826500-01
Chr02	irgsp1_rep	CDS	35520111	35520257	.	-	0	Parent=Os02t0826500-01
Chr02	irgsp1_rep	CDS	35519844	35519906	.	-	0	Parent=Os02t0826500-01
Chr02	irgsp1_rep	CDS	35519655	35519701	.	-	0	Parent=Os02t0826500-01
Chr02	irgsp1_rep	CDS	35519512	35519571	.	-	1	Parent=Os02t0826500-01
Chr02	irgsp1_rep	CDS	35519252	35519334	.	-	1	Parent=Os02t0826500-01
Chr02	irgsp1_rep	CDS	35519055	35519149	.	-	2	Parent=Os02t0826500-01
Chr02	irgsp1_rep	CDS	35518605	35518691	.	-	0	Parent=Os02t0826500-01
Chr02	irgsp1_rep	CDS	35518362	35518449	.	-	0	Parent=Os02t0826500-01
Chr02	irgsp1_rep	CDS	35518117	35518202	.	-	2	Parent=Os02t0826500-01
Chr02	irgsp1_rep	CDS	35517882	35517974	.	-	0	Parent=Os02t0826500-01
Chr02	irgsp1_rep	three_prime_UTR	35517553	35517881	.	-	.	Parent=Os02t0826500-01
Chr02	irgsp1_rep	mRNA	35517553	35521296	.	-	.	ID=Os02t0826500-02;Name=Os02t0826500-02;Locus_id=Os02g0826500;CGSNL Gene Symbol=ABCF1;CGSNL Gene Name=ABC TRANSPORTER F FAMILY MEMBER 1;Oryzabase Gene Symbol Synonym(s)=OsABCF1%2C OsABCF1_1%2C OsABCF1_2%2C OsABCF1_3;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCF subgroup member 1;Note=Hypothetical conserved gene.;Transcript_evidence=AK099841 (DDBJ%2C Best hit);ORF_evidence=B9F4M2 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=J013108I04;Oryzabase=11975;Expression=AK099841;TENOR=Os02t0826500-02;KEGG=Os02t0826500-02
Chr02	irgsp1_rep	five_prime_UTR	35521296	35521296	.	-	.	Parent=Os02t0826500-02
Chr02	irgsp1_rep	CDS	35521266	35521295	.	-	0	Parent=Os02t0826500-02
Chr02	irgsp1_rep	CDS	35521013	35521171	.	-	0	Parent=Os02t0826500-02
Chr02	irgsp1_rep	CDS	35520576	35520704	.	-	0	Parent=Os02t0826500-02
Chr02	irgsp1_rep	CDS	35520407	35520508	.	-	0	Parent=Os02t0826500-02
Chr02	irgsp1_rep	CDS	35520111	35520257	.	-	0	Parent=Os02t0826500-02
Chr02	irgsp1_rep	CDS	35519844	35519906	.	-	0	Parent=Os02t0826500-02
Chr02	irgsp1_rep	CDS	35519655	35519701	.	-	0	Parent=Os02t0826500-02
Chr02	irgsp1_rep	CDS	35519512	35519571	.	-	1	Parent=Os02t0826500-02
Chr02	irgsp1_rep	CDS	35519252	35519334	.	-	1	Parent=Os02t0826500-02
Chr02	irgsp1_rep	CDS	35519055	35519149	.	-	2	Parent=Os02t0826500-02
Chr02	irgsp1_rep	CDS	35518605	35518691	.	-	0	Parent=Os02t0826500-02
Chr02	irgsp1_rep	CDS	35518362	35518449	.	-	0	Parent=Os02t0826500-02
Chr02	irgsp1_rep	CDS	35518117	35518202	.	-	2	Parent=Os02t0826500-02
Chr02	irgsp1_rep	CDS	35517912	35517974	.	-	0	Parent=Os02t0826500-02
Chr02	irgsp1_rep	CDS	35517700	35517819	.	-	0	Parent=Os02t0826500-02
Chr02	irgsp1_rep	three_prime_UTR	35517553	35517699	.	-	.	Parent=Os02t0826500-02
Chr02	irgsp1_rep	mRNA	35517551	35520437	.	-	.	ID=Os02t0826500-03;Name=Os02t0826500-03;Locus_id=Os02g0826500;CGSNL Gene Symbol=ABCF1;CGSNL Gene Name=ABC TRANSPORTER F FAMILY MEMBER 1;Oryzabase Gene Symbol Synonym(s)=OsABCF1%2C OsABCF1_1%2C OsABCF1_2%2C OsABCF1_3;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCF subgroup member 1;Note=Hypothetical conserved gene.;Transcript_evidence=AK061860 (DDBJ%2C Best hit);ORF_evidence=Q6K7R5 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=001-040-G10;Oryzabase=11975;Expression=AK061860;TENOR=Os02t0826500-03;KEGG=Os02t0826500-03
Chr02	irgsp1_rep	five_prime_UTR	35520437	35520437	.	-	.	Parent=Os02t0826500-03
Chr02	irgsp1_rep	CDS	35520407	35520436	.	-	0	Parent=Os02t0826500-03
Chr02	irgsp1_rep	CDS	35520111	35520257	.	-	0	Parent=Os02t0826500-03
Chr02	irgsp1_rep	CDS	35519844	35519906	.	-	0	Parent=Os02t0826500-03
Chr02	irgsp1_rep	CDS	35519655	35519701	.	-	0	Parent=Os02t0826500-03
Chr02	irgsp1_rep	CDS	35519512	35519571	.	-	1	Parent=Os02t0826500-03
Chr02	irgsp1_rep	CDS	35519252	35519334	.	-	1	Parent=Os02t0826500-03
Chr02	irgsp1_rep	CDS	35519055	35519149	.	-	2	Parent=Os02t0826500-03
Chr02	irgsp1_rep	CDS	35518605	35518691	.	-	0	Parent=Os02t0826500-03
Chr02	irgsp1_rep	CDS	35518362	35518449	.	-	0	Parent=Os02t0826500-03
Chr02	irgsp1_rep	CDS	35518117	35518202	.	-	2	Parent=Os02t0826500-03
Chr02	irgsp1_rep	CDS	35517912	35517974	.	-	0	Parent=Os02t0826500-03
Chr02	irgsp1_rep	CDS	35517700	35517819	.	-	0	Parent=Os02t0826500-03
Chr02	irgsp1_rep	three_prime_UTR	35517551	35517699	.	-	.	Parent=Os02t0826500-03
Chr02	irgsp1_rep	mRNA	35523774	35525311	.	+	.	ID=Os02t0826533-00;Name=Os02t0826533-00;Locus_id=Os02g0826533;Note=Non-protein coding transcript.;Transcript_evidence=tplb0033e11 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os02t0826533-00
Chr02	irgsp1_rep	exon	35523774	35524370	.	+	.	Parent=Os02t0826533-00
Chr02	irgsp1_rep	exon	35524494	35525311	.	+	.	Parent=Os02t0826533-00
Chr02	irgsp1_rep	mRNA	35523870	35525498	.	-	.	ID=Os02t0826566-00;Name=Os02t0826566-00;Locus_id=Os02g0826566;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK367617 (DDBJ);ORF_evidence=B8AF61 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);TENOR=Os02t0826566-00
Chr02	irgsp1_rep	five_prime_UTR	35525341	35525498	.	-	.	Parent=Os02t0826566-00
Chr02	irgsp1_rep	CDS	35524702	35525340	.	-	0	Parent=Os02t0826566-00
Chr02	irgsp1_rep	three_prime_UTR	35524458	35524701	.	-	.	Parent=Os02t0826566-00
Chr02	irgsp1_rep	three_prime_UTR	35523870	35524338	.	-	.	Parent=Os02t0826566-00
Chr02	irgsp1_rep	mRNA	35526632	35533043	.	-	.	ID=Os02t0826600-01;Name=Os02t0826600-01;Locus_id=Os02g0826600;Oryzabase Gene Symbol Synonym(s)=OsIRL6;Oryzabase Gene Name Synonym(s)=intracellular Ras-group-related LRR protein 6;Note=Leucine-rich repeat%2C typical subtype containing protein.;Transcript_evidence=AK073434 (DDBJ%2C Best hit);ORF_evidence=B9F4M3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591);NIAS_FLcDNA=J033042L19;Oryzabase=17577;Expression=AK073434;TENOR=Os02t0826600-01;KEGG=Os02t0826600-01
Chr02	irgsp1_rep	five_prime_UTR	35532923	35533043	.	-	.	Parent=Os02t0826600-01
Chr02	irgsp1_rep	CDS	35532858	35532922	.	-	0	Parent=Os02t0826600-01
Chr02	irgsp1_rep	CDS	35532507	35532570	.	-	1	Parent=Os02t0826600-01
Chr02	irgsp1_rep	CDS	35532251	35532387	.	-	0	Parent=Os02t0826600-01
Chr02	irgsp1_rep	CDS	35531910	35531996	.	-	1	Parent=Os02t0826600-01
Chr02	irgsp1_rep	CDS	35531626	35531701	.	-	1	Parent=Os02t0826600-01
Chr02	irgsp1_rep	CDS	35531420	35531494	.	-	0	Parent=Os02t0826600-01
Chr02	irgsp1_rep	CDS	35531252	35531321	.	-	0	Parent=Os02t0826600-01
Chr02	irgsp1_rep	CDS	35531083	35531160	.	-	2	Parent=Os02t0826600-01
Chr02	irgsp1_rep	CDS	35530938	35530998	.	-	2	Parent=Os02t0826600-01
Chr02	irgsp1_rep	CDS	35530771	35530849	.	-	1	Parent=Os02t0826600-01
Chr02	irgsp1_rep	CDS	35529989	35530079	.	-	0	Parent=Os02t0826600-01
Chr02	irgsp1_rep	CDS	35529675	35529735	.	-	2	Parent=Os02t0826600-01
Chr02	irgsp1_rep	CDS	35529502	35529572	.	-	1	Parent=Os02t0826600-01
Chr02	irgsp1_rep	CDS	35529265	35529338	.	-	2	Parent=Os02t0826600-01
Chr02	irgsp1_rep	CDS	35528802	35528939	.	-	0	Parent=Os02t0826600-01
Chr02	irgsp1_rep	CDS	35528570	35528674	.	-	0	Parent=Os02t0826600-01
Chr02	irgsp1_rep	CDS	35527929	35528053	.	-	0	Parent=Os02t0826600-01
Chr02	irgsp1_rep	CDS	35527756	35527852	.	-	1	Parent=Os02t0826600-01
Chr02	irgsp1_rep	CDS	35527535	35527609	.	-	0	Parent=Os02t0826600-01
Chr02	irgsp1_rep	CDS	35527352	35527407	.	-	0	Parent=Os02t0826600-01
Chr02	irgsp1_rep	CDS	35526968	35527043	.	-	1	Parent=Os02t0826600-01
Chr02	irgsp1_rep	three_prime_UTR	35526632	35526967	.	-	.	Parent=Os02t0826600-01
Chr02	irgsp1_rep	mRNA	35526978	35533014	.	+	.	ID=Os02t0826625-00;Name=Os02t0826625-00;Locus_id=Os02g0826625;Note=Hypothetical protein.;Transcript_evidence=tplb0028j22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0826625-00
Chr02	irgsp1_rep	five_prime_UTR	35526978	35527085	.	+	.	Parent=Os02t0826625-00
Chr02	irgsp1_rep	five_prime_UTR	35527523	35527617	.	+	.	Parent=Os02t0826625-00
Chr02	irgsp1_rep	five_prime_UTR	35527767	35527850	.	+	.	Parent=Os02t0826625-00
Chr02	irgsp1_rep	five_prime_UTR	35527934	35528042	.	+	.	Parent=Os02t0826625-00
Chr02	irgsp1_rep	five_prime_UTR	35528557	35528686	.	+	.	Parent=Os02t0826625-00
Chr02	irgsp1_rep	five_prime_UTR	35528815	35528935	.	+	.	Parent=Os02t0826625-00
Chr02	irgsp1_rep	five_prime_UTR	35529262	35529340	.	+	.	Parent=Os02t0826625-00
Chr02	irgsp1_rep	five_prime_UTR	35529503	35529513	.	+	.	Parent=Os02t0826625-00
Chr02	irgsp1_rep	CDS	35529514	35529575	.	+	0	Parent=Os02t0826625-00
Chr02	irgsp1_rep	CDS	35529683	35529725	.	+	1	Parent=Os02t0826625-00
Chr02	irgsp1_rep	CDS	35529979	35530079	.	+	0	Parent=Os02t0826625-00
Chr02	irgsp1_rep	CDS	35530771	35530842	.	+	1	Parent=Os02t0826625-00
Chr02	irgsp1_rep	CDS	35530929	35530932	.	+	1	Parent=Os02t0826625-00
Chr02	irgsp1_rep	three_prime_UTR	35530933	35530991	.	+	.	Parent=Os02t0826625-00
Chr02	irgsp1_rep	three_prime_UTR	35531077	35531162	.	+	.	Parent=Os02t0826625-00
Chr02	irgsp1_rep	three_prime_UTR	35531255	35531315	.	+	.	Parent=Os02t0826625-00
Chr02	irgsp1_rep	three_prime_UTR	35531413	35531500	.	+	.	Parent=Os02t0826625-00
Chr02	irgsp1_rep	three_prime_UTR	35531632	35531694	.	+	.	Parent=Os02t0826625-00
Chr02	irgsp1_rep	three_prime_UTR	35531904	35531996	.	+	.	Parent=Os02t0826625-00
Chr02	irgsp1_rep	three_prime_UTR	35532251	35532378	.	+	.	Parent=Os02t0826625-00
Chr02	irgsp1_rep	three_prime_UTR	35532490	35532562	.	+	.	Parent=Os02t0826625-00
Chr02	irgsp1_rep	three_prime_UTR	35532849	35533014	.	+	.	Parent=Os02t0826625-00
Chr02	irgsp1_rep	mRNA	35534131	35535959	.	+	.	ID=Os02t0826650-00;Name=Os02t0826650-00;Locus_id=Os02g0826650;Note=Hypothetical protein.;Transcript_evidence=tplb0031m24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0826650-00
Chr02	irgsp1_rep	five_prime_UTR	35534131	35534694	.	+	.	Parent=Os02t0826650-00
Chr02	irgsp1_rep	five_prime_UTR	35534931	35535314	.	+	.	Parent=Os02t0826650-00
Chr02	irgsp1_rep	CDS	35535315	35535545	.	+	0	Parent=Os02t0826650-00
Chr02	irgsp1_rep	three_prime_UTR	35535546	35535959	.	+	.	Parent=Os02t0826650-00
Chr02	irgsp1_rep	mRNA	35534139	35534690	.	-	.	ID=Os02t0826675-00;Name=Os02t0826675-00;Locus_id=Os02g0826675;Oryzabase Gene Symbol Synonym(s)=OsFbox125%2C Os_F0403;Oryzabase Gene Name Synonym(s)=F-box protein 125;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6K7R1 (UniProt);Oryzabase=16916;TENOR=Os02t0826675-00
Chr02	irgsp1_rep	CDS	35534139	35534690	.	-	0	Parent=Os02t0826675-00
Chr02	irgsp1_rep	mRNA	35535173	35536130	.	-	.	ID=Os02t0826700-00;Name=Os02t0826700-00;Locus_id=Os02g0826700;Oryzabase Gene Symbol Synonym(s)=OsFbox125%2C Os_F0403;Oryzabase Gene Name Synonym(s)=F-box protein 125;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6K7R1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=16916;TENOR=Os02t0826700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	35536101	35536130	.	-	0	Parent=Os02t0826700-00
Chr02	irgsp1_rep	CDS	35535173	35535988	.	-	0	Parent=Os02t0826700-00
Chr02	irgsp1_rep	mRNA	35547153	35548242	.	+	.	ID=Os02t0827100-01;Name=Os02t0827100-01;Locus_id=Os02g0827100;Note=Similar to prolyl 4-hydroxylase alpha-2 subunit.;Transcript_evidence=AK058935 (DDBJ%2C Best hit);ORF_evidence=NP_001159002.1 (RefSeq);NIAS_FLcDNA=001-009-E12;Expression=AK058935;TENOR=Os02t0827100-01;KEGG=Os02t0827100-01
Chr02	irgsp1_rep	five_prime_UTR	35547153	35547153	.	+	.	Parent=Os02t0827100-01
Chr02	irgsp1_rep	CDS	35547154	35547202	.	+	0	Parent=Os02t0827100-01
Chr02	irgsp1_rep	CDS	35547395	35547468	.	+	2	Parent=Os02t0827100-01
Chr02	irgsp1_rep	three_prime_UTR	35547469	35547494	.	+	.	Parent=Os02t0827100-01
Chr02	irgsp1_rep	three_prime_UTR	35547870	35548242	.	+	.	Parent=Os02t0827100-01
Chr02	irgsp1_rep	mRNA	35548813	35553439	.	+	.	ID=Os02t0827200-01;Name=Os02t0827200-01;Locus_id=Os02g0827200;CGSNL Gene Symbol=SUT4;CGSNL Gene Name=SUCROSE TRANSPORTER 4;Oryzabase Gene Symbol Synonym(s)=OsSUT4(t)%2C OsSUT4;Oryzabase Gene Name Synonym(s)=sucrose transporter4(t);Note=Similar to Sucrose transporter.;Transcript_evidence=AK065430 (DDBJ%2C Best hit);ORF_evidence=Q6YK44 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J013023D24;Oryzabase=2210;Expression=AK065430;TENOR=Os02t0827200-01;KEGG=Os02t0827200-01
Chr02	irgsp1_rep	five_prime_UTR	35548813	35549091	.	+	.	Parent=Os02t0827200-01
Chr02	irgsp1_rep	CDS	35549092	35549355	.	+	0	Parent=Os02t0827200-01
Chr02	irgsp1_rep	CDS	35549810	35549875	.	+	0	Parent=Os02t0827200-01
Chr02	irgsp1_rep	CDS	35549982	35550080	.	+	0	Parent=Os02t0827200-01
Chr02	irgsp1_rep	CDS	35550159	35550223	.	+	0	Parent=Os02t0827200-01
Chr02	irgsp1_rep	CDS	35550309	35550393	.	+	1	Parent=Os02t0827200-01
Chr02	irgsp1_rep	CDS	35550535	35550568	.	+	0	Parent=Os02t0827200-01
Chr02	irgsp1_rep	CDS	35550654	35550753	.	+	2	Parent=Os02t0827200-01
Chr02	irgsp1_rep	CDS	35551245	35551395	.	+	1	Parent=Os02t0827200-01
Chr02	irgsp1_rep	three_prime_UTR	35551396	35551822	.	+	.	Parent=Os02t0827200-01
Chr02	irgsp1_rep	three_prime_UTR	35551933	35552076	.	+	.	Parent=Os02t0827200-01
Chr02	irgsp1_rep	three_prime_UTR	35552347	35552580	.	+	.	Parent=Os02t0827200-01
Chr02	irgsp1_rep	three_prime_UTR	35552656	35552719	.	+	.	Parent=Os02t0827200-01
Chr02	irgsp1_rep	three_prime_UTR	35552804	35552847	.	+	.	Parent=Os02t0827200-01
Chr02	irgsp1_rep	three_prime_UTR	35552938	35553439	.	+	.	Parent=Os02t0827200-01
Chr02	irgsp1_rep	mRNA	35553869	35558878	.	+	.	ID=Os02t0827300-01;Name=Os02t0827300-01;Locus_id=Os02g0827300;Note=Protein of unknown function DUF382 domain containing protein.;Transcript_evidence=AK069159 (DDBJ%2C Best hit);ORF_evidence=A2Q200 (UniProt);GO=Cellular Component: nucleus (GO:0005634);InterPro=PSP%2C proline-rich (IPR006568),Domain of unknown function DUF382 (IPR007180);NIAS_FLcDNA=J023007N07;Expression=AK069159;TENOR=Os02t0827300-01;KEGG=Os02t0827300-01
Chr02	irgsp1_rep	five_prime_UTR	35553869	35553909	.	+	.	Parent=Os02t0827300-01
Chr02	irgsp1_rep	CDS	35553910	35554131	.	+	0	Parent=Os02t0827300-01
Chr02	irgsp1_rep	CDS	35554251	35554367	.	+	0	Parent=Os02t0827300-01
Chr02	irgsp1_rep	CDS	35554494	35554619	.	+	0	Parent=Os02t0827300-01
Chr02	irgsp1_rep	CDS	35554724	35554786	.	+	0	Parent=Os02t0827300-01
Chr02	irgsp1_rep	CDS	35555344	35555451	.	+	0	Parent=Os02t0827300-01
Chr02	irgsp1_rep	CDS	35556094	35556171	.	+	0	Parent=Os02t0827300-01
Chr02	irgsp1_rep	CDS	35556279	35556371	.	+	0	Parent=Os02t0827300-01
Chr02	irgsp1_rep	CDS	35556713	35556799	.	+	0	Parent=Os02t0827300-01
Chr02	irgsp1_rep	CDS	35556936	35557037	.	+	0	Parent=Os02t0827300-01
Chr02	irgsp1_rep	CDS	35557124	35557243	.	+	0	Parent=Os02t0827300-01
Chr02	irgsp1_rep	CDS	35557346	35557408	.	+	0	Parent=Os02t0827300-01
Chr02	irgsp1_rep	CDS	35557481	35557626	.	+	0	Parent=Os02t0827300-01
Chr02	irgsp1_rep	CDS	35557710	35557803	.	+	1	Parent=Os02t0827300-01
Chr02	irgsp1_rep	CDS	35557906	35557964	.	+	0	Parent=Os02t0827300-01
Chr02	irgsp1_rep	CDS	35558075	35558114	.	+	1	Parent=Os02t0827300-01
Chr02	irgsp1_rep	CDS	35558201	35558292	.	+	0	Parent=Os02t0827300-01
Chr02	irgsp1_rep	CDS	35558384	35558453	.	+	1	Parent=Os02t0827300-01
Chr02	irgsp1_rep	CDS	35558564	35558632	.	+	0	Parent=Os02t0827300-01
Chr02	irgsp1_rep	three_prime_UTR	35558633	35558878	.	+	.	Parent=Os02t0827300-01
Chr02	irgsp1_rep	mRNA	35560478	35561544	.	+	.	ID=Os02t0827400-00;Name=Os02t0827400-00;Locus_id=Os02g0827400;Note=Similar to predicted protein.;Transcript_evidence=CT835495 (DDBJ%2C Best hit);ORF_evidence=NP_001048593.1 (RefSeq);InterPro=Protein of unknown function DUF789 (IPR008507);TENOR=Os02t0827400-00;KEGG=Os02t0827400-00
Chr02	irgsp1_rep	five_prime_UTR	35560478	35560478	.	+	.	Parent=Os02t0827400-00
Chr02	irgsp1_rep	CDS	35560479	35560577	.	+	0	Parent=Os02t0827400-00
Chr02	irgsp1_rep	CDS	35560680	35560765	.	+	0	Parent=Os02t0827400-00
Chr02	irgsp1_rep	CDS	35560957	35561048	.	+	1	Parent=Os02t0827400-00
Chr02	irgsp1_rep	CDS	35561181	35561377	.	+	2	Parent=Os02t0827400-00
Chr02	irgsp1_rep	three_prime_UTR	35561378	35561544	.	+	.	Parent=Os02t0827400-00
Chr02	irgsp1_rep	mRNA	35564830	35567513	.	+	.	ID=Os02t0827500-01;Name=Os02t0827500-01;Locus_id=Os02g0827500;Note=Hypothetical conserved gene.;Transcript_evidence=AK242677 (DDBJ%2C Best hit);ORF_evidence=Q6K7Q5 (UniProt);InterPro=Domain of unknown function DUF2404 (IPR019411);NIAS_FLcDNA=J090031P06;TENOR=Os02t0827500-01;KEGG=Os02t0827500-01
Chr02	irgsp1_rep	CDS	35564830	35565336	.	+	0	Parent=Os02t0827500-01
Chr02	irgsp1_rep	CDS	35565415	35565769	.	+	0	Parent=Os02t0827500-01
Chr02	irgsp1_rep	CDS	35566065	35566156	.	+	2	Parent=Os02t0827500-01
Chr02	irgsp1_rep	CDS	35566396	35566590	.	+	0	Parent=Os02t0827500-01
Chr02	irgsp1_rep	CDS	35566674	35567390	.	+	0	Parent=Os02t0827500-01
Chr02	irgsp1_rep	three_prime_UTR	35567391	35567513	.	+	.	Parent=Os02t0827500-01
Chr02	irgsp1_rep	mRNA	35567756	35570398	.	-	.	ID=Os02t0827600-01;Name=Os02t0827600-01;Locus_id=Os02g0827600;Note=Protein of unknown function DUF3531 domain containing protein.;Transcript_evidence=AK068455 (DDBJ%2C Best hit);ORF_evidence=B8AF65 (UniProt);InterPro=Protein of unknown function DUF3531 (IPR021920);NIAS_FLcDNA=J013152B13;Expression=AK068455;TENOR=Os02t0827600-01;KEGG=Os02t0827600-01
Chr02	irgsp1_rep	five_prime_UTR	35570381	35570398	.	-	.	Parent=Os02t0827600-01
Chr02	irgsp1_rep	CDS	35570162	35570380	.	-	0	Parent=Os02t0827600-01
Chr02	irgsp1_rep	CDS	35569912	35569998	.	-	0	Parent=Os02t0827600-01
Chr02	irgsp1_rep	CDS	35569726	35569814	.	-	0	Parent=Os02t0827600-01
Chr02	irgsp1_rep	CDS	35569426	35569504	.	-	1	Parent=Os02t0827600-01
Chr02	irgsp1_rep	CDS	35569274	35569333	.	-	0	Parent=Os02t0827600-01
Chr02	irgsp1_rep	CDS	35568618	35568739	.	-	0	Parent=Os02t0827600-01
Chr02	irgsp1_rep	CDS	35568470	35568541	.	-	1	Parent=Os02t0827600-01
Chr02	irgsp1_rep	CDS	35568006	35568108	.	-	1	Parent=Os02t0827600-01
Chr02	irgsp1_rep	three_prime_UTR	35567756	35568005	.	-	.	Parent=Os02t0827600-01
Chr02	irgsp1_rep	mRNA	35572398	35578157	.	-	.	ID=Os02t0827900-01;Name=Os02t0827900-01;Locus_id=Os02g0827900;Oryzabase Gene Symbol Synonym(s)=OsSigP1%2C SIGP1;Oryzabase Gene Name Synonym(s)=Type I Signal Peptidase 1%2C TYPE I SIGNAL PEPTIDASE 1;Note=Similar to Microsomal signal peptidase 21 kDa subunit.;Transcript_evidence=AK099911 (DDBJ%2C Best hit);ORF_evidence=B6T545 (UniProt);GO=Biological Process: signal peptide processing (GO:0006465),Cellular Component: membrane (GO:0016020),Molecular Function: peptidase activity (GO:0008233);InterPro=Peptidase S26B%2C eukaryotic signal peptidase (IPR001733),Peptidase S24/S26A/S26B/S26C%2C beta-ribbon domain (IPR011056),Peptidase S24/S26A/S26B/S26C (IPR015927),Peptidase S24/S26A/S26B (IPR019759);NIAS_FLcDNA=J013116D13;Oryzabase=20042;TENOR=Os02t0827900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	35578074	35578157	.	-	.	Parent=Os02t0827900-01
Chr02	irgsp1_rep	CDS	35578010	35578073	.	-	0	Parent=Os02t0827900-01
Chr02	irgsp1_rep	CDS	35577660	35577772	.	-	2	Parent=Os02t0827900-01
Chr02	irgsp1_rep	CDS	35577452	35577520	.	-	0	Parent=Os02t0827900-01
Chr02	irgsp1_rep	CDS	35577250	35577285	.	-	0	Parent=Os02t0827900-01
Chr02	irgsp1_rep	CDS	35577098	35577143	.	-	0	Parent=Os02t0827900-01
Chr02	irgsp1_rep	CDS	35576832	35576919	.	-	2	Parent=Os02t0827900-01
Chr02	irgsp1_rep	CDS	35576668	35576725	.	-	1	Parent=Os02t0827900-01
Chr02	irgsp1_rep	CDS	35573203	35573328	.	-	0	Parent=Os02t0827900-01
Chr02	irgsp1_rep	three_prime_UTR	35572398	35573202	.	-	.	Parent=Os02t0827900-01
Chr02	irgsp1_rep	mRNA	35573398	35575865	.	-	.	ID=Os02t0827900-02;Name=Os02t0827900-02;Locus_id=Os02g0827900;Oryzabase Gene Symbol Synonym(s)=OsSigP1%2C SIGP1;Oryzabase Gene Name Synonym(s)=Type I Signal Peptidase 1%2C TYPE I SIGNAL PEPTIDASE 1;Note=Hypothetical conserved gene.;Transcript_evidence=AK070500 (DDBJ%2C Best hit);ORF_evidence=Q6K7Q1 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J023051E14;Oryzabase=20042;Expression=AK070500;TENOR=Os02t0827900-02;KEGG=Os02t0827900-02
Chr02	irgsp1_rep	five_prime_UTR	35575859	35575865	.	-	.	Parent=Os02t0827900-02
Chr02	irgsp1_rep	CDS	35574601	35575858	.	-	0	Parent=Os02t0827900-02
Chr02	irgsp1_rep	CDS	35573913	35574397	.	-	2	Parent=Os02t0827900-02
Chr02	irgsp1_rep	three_prime_UTR	35573398	35573912	.	-	.	Parent=Os02t0827900-02
Chr02	irgsp1_rep	mRNA	35572396	35575862	.	-	.	ID=Os02t0827900-03;Name=Os02t0827900-03;Locus_id=Os02g0827900;Oryzabase Gene Symbol Synonym(s)=OsSigP1%2C SIGP1;Oryzabase Gene Name Synonym(s)=Type I Signal Peptidase 1%2C TYPE I SIGNAL PEPTIDASE 1;Note=Hypothetical conserved gene.;Transcript_evidence=AK102344 (DDBJ%2C Best hit);ORF_evidence=Q6K7Q1 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J033091B18;Oryzabase=20042;Expression=AK102344;TENOR=Os02t0827900-03;KEGG=Os02t0827900-03
Chr02	irgsp1_rep	five_prime_UTR	35575859	35575862	.	-	.	Parent=Os02t0827900-03
Chr02	irgsp1_rep	CDS	35574601	35575858	.	-	0	Parent=Os02t0827900-03
Chr02	irgsp1_rep	CDS	35573913	35574397	.	-	2	Parent=Os02t0827900-03
Chr02	irgsp1_rep	three_prime_UTR	35573800	35573912	.	-	.	Parent=Os02t0827900-03
Chr02	irgsp1_rep	three_prime_UTR	35572396	35573328	.	-	.	Parent=Os02t0827900-03
Chr02	irgsp1_rep	mRNA	35572414	35572944	.	-	.	ID=Os02t0827900-04;Name=Os02t0827900-04;Locus_id=Os02g0827900;Oryzabase Gene Symbol Synonym(s)=OsSigP1%2C SIGP1;Oryzabase Gene Name Synonym(s)=Type I Signal Peptidase 1%2C TYPE I SIGNAL PEPTIDASE 1;Note=Non-protein coding transcript.;Transcript_evidence=AK062229 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-047-D03;Oryzabase=20042;TENOR=Os02t0827900-04
Chr02	irgsp1_rep	exon	35572414	35572944	.	-	.	Parent=Os02t0827900-04
Chr02	irgsp1_rep	mRNA	35578591	35582824	.	-	.	ID=Os02t0828100-01;Name=Os02t0828100-01;Locus_id=Os02g0828100;Note=BRO1 domain containing protein.;Transcript_evidence=AK070854 (DDBJ%2C Best hit);ORF_evidence=Q6K7Q0 (UniProt);InterPro=BRO1 domain (IPR004328);NIAS_FLcDNA=J023064O14;Expression=AK070854;TENOR=Os02t0828100-01;KEGG=Os02t0828100-01
Chr02	irgsp1_rep	five_prime_UTR	35582780	35582824	.	-	.	Parent=Os02t0828100-01
Chr02	irgsp1_rep	five_prime_UTR	35581725	35581727	.	-	.	Parent=Os02t0828100-01
Chr02	irgsp1_rep	CDS	35581463	35581724	.	-	0	Parent=Os02t0828100-01
Chr02	irgsp1_rep	CDS	35581302	35581376	.	-	2	Parent=Os02t0828100-01
Chr02	irgsp1_rep	CDS	35581143	35581201	.	-	2	Parent=Os02t0828100-01
Chr02	irgsp1_rep	CDS	35580915	35581050	.	-	0	Parent=Os02t0828100-01
Chr02	irgsp1_rep	CDS	35580646	35580742	.	-	2	Parent=Os02t0828100-01
Chr02	irgsp1_rep	CDS	35580494	35580560	.	-	1	Parent=Os02t0828100-01
Chr02	irgsp1_rep	CDS	35580136	35580234	.	-	0	Parent=Os02t0828100-01
Chr02	irgsp1_rep	CDS	35579563	35579652	.	-	0	Parent=Os02t0828100-01
Chr02	irgsp1_rep	CDS	35579147	35579303	.	-	0	Parent=Os02t0828100-01
Chr02	irgsp1_rep	CDS	35579015	35579040	.	-	2	Parent=Os02t0828100-01
Chr02	irgsp1_rep	three_prime_UTR	35578591	35579014	.	-	.	Parent=Os02t0828100-01
Chr02	irgsp1_rep	mRNA	35584962	35589241	.	+	.	ID=Os02t0828200-01;Name=Os02t0828200-01;Locus_id=Os02g0828200;Note=TPR-like domain containing protein.;Transcript_evidence=AK071199 (DDBJ%2C Best hit);ORF_evidence=XP_002883220.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J023083N21;Expression=AK071199;TENOR=Os02t0828200-01;KEGG=Os02t0828200-01
Chr02	irgsp1_rep	five_prime_UTR	35584962	35585026	.	+	.	Parent=Os02t0828200-01
Chr02	irgsp1_rep	CDS	35585027	35585571	.	+	0	Parent=Os02t0828200-01
Chr02	irgsp1_rep	CDS	35588337	35589051	.	+	1	Parent=Os02t0828200-01
Chr02	irgsp1_rep	three_prime_UTR	35589052	35589241	.	+	.	Parent=Os02t0828200-01
Chr02	irgsp1_rep	mRNA	35585712	35586890	.	-	.	ID=Os02t0828300-01;Name=Os02t0828300-01;Locus_id=Os02g0828300;Note=Conserved hypothetical protein.;Transcript_evidence=AK108744 (DDBJ%2C Best hit);ORF_evidence=B8BG05 (UniProt);NIAS_FLcDNA=002-150-E08;TENOR=Os02t0828300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	35586298	35586890	.	-	.	Parent=Os02t0828300-01
Chr02	irgsp1_rep	CDS	35585824	35586297	.	-	0	Parent=Os02t0828300-01
Chr02	irgsp1_rep	three_prime_UTR	35585712	35585823	.	-	.	Parent=Os02t0828300-01
Chr02	irgsp1_rep	mRNA	35585773	35587148	.	+	.	ID=Os02t0828400-01;Name=Os02t0828400-01;Locus_id=Os02g0828400;Note=Conserved hypothetical protein.;Transcript_evidence=AK107588 (DDBJ%2C Best hit);ORF_evidence=Q6ZAX3 (UniProt);NIAS_FLcDNA=002-131-A03;TENOR=Os02t0828400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	35585773	35586370	.	+	.	Parent=Os02t0828400-01
Chr02	irgsp1_rep	CDS	35586371	35586919	.	+	0	Parent=Os02t0828400-01
Chr02	irgsp1_rep	three_prime_UTR	35586920	35587148	.	+	.	Parent=Os02t0828400-01
Chr02	irgsp1_rep	mRNA	35595533	35596967	.	+	.	ID=Os02t0828500-01;Name=Os02t0828500-01;Locus_id=Os02g0828500;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK105163 (DDBJ%2C Best hit);ORF_evidence=XP_002883220.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-104-D02;Expression=AK105163;TENOR=Os02t0828500-01;KEGG=Os02t0828500-01
Chr02	irgsp1_rep	five_prime_UTR	35595533	35595612	.	+	.	Parent=Os02t0828500-01
Chr02	irgsp1_rep	CDS	35595613	35596857	.	+	0	Parent=Os02t0828500-01
Chr02	irgsp1_rep	three_prime_UTR	35596858	35596967	.	+	.	Parent=Os02t0828500-01
Chr02	irgsp1_rep	mRNA	35598560	35600678	.	+	.	ID=Os02t0828533-01;Name=Os02t0828533-01;Locus_id=Os02g0828533;Note=Similar to HAT family dimerisation domain containing protein.;Transcript_evidence=AK242554 (DDBJ%2C Best hit);ORF_evidence=Q2QPQ7 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein dimerization activity (GO:0046983);InterPro=HAT dimerisation (IPR008906),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J080319M04;TENOR=Os02t0828533-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	35598560	35598853	.	+	.	Parent=Os02t0828533-01
Chr02	irgsp1_rep	five_prime_UTR	35598947	35599162	.	+	.	Parent=Os02t0828533-01
Chr02	irgsp1_rep	five_prime_UTR	35599271	35599320	.	+	.	Parent=Os02t0828533-01
Chr02	irgsp1_rep	CDS	35599321	35599684	.	+	0	Parent=Os02t0828533-01
Chr02	irgsp1_rep	CDS	35599773	35599841	.	+	2	Parent=Os02t0828533-01
Chr02	irgsp1_rep	CDS	35600213	35600220	.	+	2	Parent=Os02t0828533-01
Chr02	irgsp1_rep	three_prime_UTR	35600221	35600678	.	+	.	Parent=Os02t0828533-01
Chr02	irgsp1_rep	mRNA	35608987	35610667	.	-	.	ID=Os02t0828566-01;Name=Os02t0828566-01;Locus_id=Os02g0828566;Note=Transcription factor%2C TCP domain containing protein.;Transcript_evidence=AK240798 (DDBJ%2C Best hit);ORF_evidence=Q9FMX2 (UniProt);InterPro=Transcription factor%2C TCP (IPR005333),Transcription factor TCP subgroup (IPR017887);NIAS_FLcDNA=J065002G04;TENOR=Os02t0828566-01;KEGG=Os02t0828566-01
Chr02	irgsp1_rep	five_prime_UTR	35610599	35610667	.	-	.	Parent=Os02t0828566-01
Chr02	irgsp1_rep	CDS	35609888	35610598	.	-	0	Parent=Os02t0828566-01
Chr02	irgsp1_rep	three_prime_UTR	35608987	35609887	.	-	.	Parent=Os02t0828566-01
Chr02	irgsp1_rep	mRNA	35609003	35609743	.	+	.	ID=Os02t0828600-01;Name=Os02t0828600-01;Locus_id=Os02g0828600;Oryzabase Gene Symbol Synonym(s)=OsTCP11%2C TCP11;Oryzabase Gene Name Synonym(s)=TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 11;Note=Hypothetical conserved gene.;Transcript_evidence=AK062988 (DDBJ%2C Best hit);ORF_evidence=A3ACY4 (UniProt);NIAS_FLcDNA=001-109-F11;Oryzabase=19585;Expression=AK062988;TENOR=Os02t0828600-01;KEGG=Os02t0828600-01
Chr02	irgsp1_rep	five_prime_UTR	35609003	35609055	.	+	.	Parent=Os02t0828600-01
Chr02	irgsp1_rep	CDS	35609056	35609190	.	+	0	Parent=Os02t0828600-01
Chr02	irgsp1_rep	three_prime_UTR	35609191	35609743	.	+	.	Parent=Os02t0828600-01
Chr02	irgsp1_rep	mRNA	35621745	35622236	.	-	.	ID=Os02t0828800-01;Name=Os02t0828800-01;Locus_id=Os02g0828800;Note=Hypothetical protein.;Transcript_evidence=AK062497 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=001-104-A03;TENOR=Os02t0828800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	35621985	35622236	.	-	0	Parent=Os02t0828800-01
Chr02	irgsp1_rep	three_prime_UTR	35621745	35621984	.	-	.	Parent=Os02t0828800-01
Chr02	irgsp1_rep	mRNA	35624137	35630678	.	+	.	ID=Os02t0828900-01;Name=Os02t0828900-01;Locus_id=Os02g0828900;Oryzabase Gene Symbol Synonym(s)=JMJ720;Oryzabase Gene Name Synonym(s)=Jumonji 720;Note=Transcription factor jumonji domain containing protein.;Transcript_evidence=AK073195 (DDBJ%2C Best hit);ORF_evidence=Q10J83 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Transcription factor jumonji/aspartyl beta-hydroxylase (IPR003347),Transcription factor jumonji (IPR013129);NIAS_FLcDNA=J033020J08;Oryzabase=15212;Expression=AK073195;TENOR=Os02t0828900-01;KEGG=Os02t0828900-01
Chr02	irgsp1_rep	five_prime_UTR	35624137	35624193	.	+	.	Parent=Os02t0828900-01
Chr02	irgsp1_rep	CDS	35624194	35624430	.	+	0	Parent=Os02t0828900-01
Chr02	irgsp1_rep	CDS	35625219	35625338	.	+	0	Parent=Os02t0828900-01
Chr02	irgsp1_rep	CDS	35625975	35626079	.	+	0	Parent=Os02t0828900-01
Chr02	irgsp1_rep	CDS	35626180	35626310	.	+	0	Parent=Os02t0828900-01
Chr02	irgsp1_rep	CDS	35626560	35626659	.	+	1	Parent=Os02t0828900-01
Chr02	irgsp1_rep	CDS	35626789	35626921	.	+	0	Parent=Os02t0828900-01
Chr02	irgsp1_rep	CDS	35626990	35627053	.	+	2	Parent=Os02t0828900-01
Chr02	irgsp1_rep	CDS	35627133	35627916	.	+	1	Parent=Os02t0828900-01
Chr02	irgsp1_rep	CDS	35628296	35628628	.	+	0	Parent=Os02t0828900-01
Chr02	irgsp1_rep	CDS	35628844	35629084	.	+	0	Parent=Os02t0828900-01
Chr02	irgsp1_rep	CDS	35629172	35629506	.	+	2	Parent=Os02t0828900-01
Chr02	irgsp1_rep	CDS	35629612	35629684	.	+	0	Parent=Os02t0828900-01
Chr02	irgsp1_rep	CDS	35629778	35629863	.	+	2	Parent=Os02t0828900-01
Chr02	irgsp1_rep	CDS	35629986	35630105	.	+	0	Parent=Os02t0828900-01
Chr02	irgsp1_rep	CDS	35630181	35630248	.	+	0	Parent=Os02t0828900-01
Chr02	irgsp1_rep	CDS	35630332	35630389	.	+	1	Parent=Os02t0828900-01
Chr02	irgsp1_rep	three_prime_UTR	35630390	35630678	.	+	.	Parent=Os02t0828900-01
Chr02	irgsp1_rep	mRNA	35625998	35630750	.	+	.	ID=Os02t0828900-02;Name=Os02t0828900-02;Locus_id=Os02g0828900;Oryzabase Gene Symbol Synonym(s)=JMJ720;Oryzabase Gene Name Synonym(s)=Jumonji 720;Note=Similar to JmjC domain containing protein%2C expressed.;Transcript_evidence=AK105403 (DDBJ%2C Best hit);ORF_evidence=Q10J83 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Transcription factor jumonji/aspartyl beta-hydroxylase (IPR003347),Transcription factor jumonji (IPR013129);NIAS_FLcDNA=001-123-D08;Oryzabase=15212;Expression=AK105403;TENOR=Os02t0828900-02;KEGG=Os02t0828900-02
Chr02	irgsp1_rep	five_prime_UTR	35625998	35626001	.	+	.	Parent=Os02t0828900-02
Chr02	irgsp1_rep	CDS	35626002	35626079	.	+	0	Parent=Os02t0828900-02
Chr02	irgsp1_rep	CDS	35626180	35626310	.	+	0	Parent=Os02t0828900-02
Chr02	irgsp1_rep	CDS	35626560	35626659	.	+	1	Parent=Os02t0828900-02
Chr02	irgsp1_rep	CDS	35626786	35626921	.	+	0	Parent=Os02t0828900-02
Chr02	irgsp1_rep	CDS	35626990	35627053	.	+	2	Parent=Os02t0828900-02
Chr02	irgsp1_rep	CDS	35627133	35627916	.	+	1	Parent=Os02t0828900-02
Chr02	irgsp1_rep	CDS	35628296	35628628	.	+	0	Parent=Os02t0828900-02
Chr02	irgsp1_rep	CDS	35628844	35629084	.	+	0	Parent=Os02t0828900-02
Chr02	irgsp1_rep	CDS	35629172	35629506	.	+	2	Parent=Os02t0828900-02
Chr02	irgsp1_rep	CDS	35629612	35629684	.	+	0	Parent=Os02t0828900-02
Chr02	irgsp1_rep	CDS	35629778	35629863	.	+	2	Parent=Os02t0828900-02
Chr02	irgsp1_rep	CDS	35629986	35630105	.	+	0	Parent=Os02t0828900-02
Chr02	irgsp1_rep	CDS	35630181	35630248	.	+	0	Parent=Os02t0828900-02
Chr02	irgsp1_rep	CDS	35630332	35630389	.	+	1	Parent=Os02t0828900-02
Chr02	irgsp1_rep	three_prime_UTR	35630390	35630750	.	+	.	Parent=Os02t0828900-02
Chr02	irgsp1_rep	mRNA	35633824	35636782	.	-	.	ID=Os02t0829000-01;Name=Os02t0829000-01;Locus_id=Os02g0829000;Note=Hypothetical gene.;Transcript_evidence=AK066292 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013067F15;Expression=AK066292;TENOR=Os02t0829000-01;KEGG=Os02t0829000-01
Chr02	irgsp1_rep	five_prime_UTR	35636381	35636782	.	-	.	Parent=Os02t0829000-01
Chr02	irgsp1_rep	five_prime_UTR	35634736	35635184	.	-	.	Parent=Os02t0829000-01
Chr02	irgsp1_rep	CDS	35634502	35634735	.	-	0	Parent=Os02t0829000-01
Chr02	irgsp1_rep	three_prime_UTR	35633824	35634501	.	-	.	Parent=Os02t0829000-01
Chr02	irgsp1_rep	mRNA	35639878	35642562	.	-	.	ID=Os02t0829100-01;Name=Os02t0829100-01;Locus_id=Os02g0829100;Oryzabase Gene Symbol Synonym(s)=OsRPA32%2C RPA32%2C RPA2A;Oryzabase Gene Name Synonym(s)=Replication protein A 32kDa subunit%2C RPA32kDa subunit%2C replication protein A 32 kDa subunit;Note=Replication protein A 30kDa.;Transcript_evidence=AK103235 (DDBJ%2C Best hit);ORF_evidence=Q9FY12 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Nucleic acid binding%2C OB-fold%2C tRNA/helicase-type (IPR004365),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Nucleic acid-binding%2C OB-fold (IPR012340),Replication protein A%2C subunit RPA32 (IPR014646),Replication protein A%2C C-terminal (IPR014892),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=J033123F02;Oryzabase=14081;Expression=AK103235;TENOR=Os02t0829100-01;KEGG=Os02t0829100-01
Chr02	irgsp1_rep	five_prime_UTR	35642437	35642562	.	-	.	Parent=Os02t0829100-01
Chr02	irgsp1_rep	CDS	35642347	35642436	.	-	0	Parent=Os02t0829100-01
Chr02	irgsp1_rep	CDS	35642135	35642254	.	-	0	Parent=Os02t0829100-01
Chr02	irgsp1_rep	CDS	35641942	35642039	.	-	0	Parent=Os02t0829100-01
Chr02	irgsp1_rep	CDS	35641496	35641537	.	-	1	Parent=Os02t0829100-01
Chr02	irgsp1_rep	CDS	35641282	35641359	.	-	1	Parent=Os02t0829100-01
Chr02	irgsp1_rep	CDS	35641122	35641200	.	-	1	Parent=Os02t0829100-01
Chr02	irgsp1_rep	CDS	35640901	35640996	.	-	0	Parent=Os02t0829100-01
Chr02	irgsp1_rep	CDS	35640738	35640820	.	-	0	Parent=Os02t0829100-01
Chr02	irgsp1_rep	CDS	35640304	35640372	.	-	1	Parent=Os02t0829100-01
Chr02	irgsp1_rep	CDS	35640106	35640190	.	-	1	Parent=Os02t0829100-01
Chr02	irgsp1_rep	three_prime_UTR	35639878	35640105	.	-	.	Parent=Os02t0829100-01
Chr02	irgsp1_rep	mRNA	35643004	35647410	.	-	.	ID=Os02t0829200-01;Name=Os02t0829200-01;Locus_id=Os02g0829200;CGSNL Gene Symbol=NTMC2T5;CGSNL Gene Name=N-TERMINAL-TM-C2 DOMAIN PROTEIN 5;Oryzabase Gene Symbol Synonym(s)=OsNTMC2T5;Oryzabase Gene Name Synonym(s)=N-terminal-TM-C2 domain protein 5%2C N-terminal trans- membrane and C2 domain protein 5%2C NTMC2 type 5 protein%2C NTMC2 family gene 5;Note=C2 calcium-dependent membrane targeting domain containing protein.;Transcript_evidence=AK070520 (DDBJ%2C Best hit);ORF_evidence=XP_002312239.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),C2 membrane targeting protein (IPR018029),Domain of unknown function DUF2404 (IPR019411);NIAS_FLcDNA=J023058O06;Oryzabase=22129;Expression=AK070520;TENOR=Os02t0829200-01;KEGG=Os02t0829200-01
Chr02	irgsp1_rep	CDS	35647169	35647410	.	-	0	Parent=Os02t0829200-01
Chr02	irgsp1_rep	CDS	35646341	35646582	.	-	1	Parent=Os02t0829200-01
Chr02	irgsp1_rep	CDS	35645587	35645605	.	-	2	Parent=Os02t0829200-01
Chr02	irgsp1_rep	CDS	35644770	35645023	.	-	1	Parent=Os02t0829200-01
Chr02	irgsp1_rep	CDS	35644393	35644502	.	-	2	Parent=Os02t0829200-01
Chr02	irgsp1_rep	CDS	35644196	35644294	.	-	0	Parent=Os02t0829200-01
Chr02	irgsp1_rep	CDS	35643538	35643961	.	-	0	Parent=Os02t0829200-01
Chr02	irgsp1_rep	CDS	35643331	35643419	.	-	2	Parent=Os02t0829200-01
Chr02	irgsp1_rep	three_prime_UTR	35643004	35643330	.	-	.	Parent=Os02t0829200-01
Chr02	irgsp1_rep	mRNA	35656792	35660634	.	+	.	ID=Os02t0829400-00;Name=Os02t0829400-00;Locus_id=Os02g0829400;Note=Conserved hypothetical protein.;Transcript_evidence=AK354231 (DDBJ);ORF_evidence=NP_001048606.1 (RefSeq);TENOR=Os02t0829400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	35656792	35658195	.	+	0	Parent=Os02t0829400-00
Chr02	irgsp1_rep	CDS	35658323	35658762	.	+	0	Parent=Os02t0829400-00
Chr02	irgsp1_rep	CDS	35658848	35660291	.	+	1	Parent=Os02t0829400-00
Chr02	irgsp1_rep	three_prime_UTR	35660292	35660634	.	+	.	Parent=Os02t0829400-00
Chr02	irgsp1_rep	mRNA	35660658	35663577	.	-	.	ID=Os02t0829500-01;Name=Os02t0829500-01;Locus_id=Os02g0829500;Note=Beta-lactamase-like domain containing protein.;Transcript_evidence=AK122029 (DDBJ%2C Best hit);ORF_evidence=B7EBH5 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Beta-lactamase-like (IPR001279);NIAS_FLcDNA=J033112F11;TENOR=Os02t0829500-01
Chr02	irgsp1_rep	five_prime_UTR	35663484	35663577	.	-	.	Parent=Os02t0829500-01
Chr02	irgsp1_rep	CDS	35663336	35663483	.	-	0	Parent=Os02t0829500-01
Chr02	irgsp1_rep	CDS	35663204	35663247	.	-	2	Parent=Os02t0829500-01
Chr02	irgsp1_rep	CDS	35663049	35663129	.	-	0	Parent=Os02t0829500-01
Chr02	irgsp1_rep	CDS	35662875	35662982	.	-	0	Parent=Os02t0829500-01
Chr02	irgsp1_rep	CDS	35662689	35662780	.	-	0	Parent=Os02t0829500-01
Chr02	irgsp1_rep	CDS	35662354	35662428	.	-	1	Parent=Os02t0829500-01
Chr02	irgsp1_rep	CDS	35662174	35662243	.	-	1	Parent=Os02t0829500-01
Chr02	irgsp1_rep	CDS	35661778	35661879	.	-	0	Parent=Os02t0829500-01
Chr02	irgsp1_rep	CDS	35661331	35661445	.	-	0	Parent=Os02t0829500-01
Chr02	irgsp1_rep	CDS	35661167	35661229	.	-	2	Parent=Os02t0829500-01
Chr02	irgsp1_rep	CDS	35660963	35661045	.	-	2	Parent=Os02t0829500-01
Chr02	irgsp1_rep	three_prime_UTR	35660658	35660962	.	-	.	Parent=Os02t0829500-01
Chr02	irgsp1_rep	mRNA	35660775	35663532	.	-	.	ID=Os02t0829500-02;Name=Os02t0829500-02;Locus_id=Os02g0829500;Note=Beta-lactamase-like domain containing protein.;Transcript_evidence=AK104364 (DDBJ%2C Best hit),AK064830 (DDBJ%2C Best hit),AK104532 (DDBJ%2C Best hit);ORF_evidence=B7EBH5 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Beta-lactamase-like (IPR001279);NIAS_FLcDNA=001-035-C11,J013000F10,006-304-C07;Expression=AK104364;TENOR=Os02t0829500-02;KEGG=Os02t0829500-02
Chr02	irgsp1_rep	five_prime_UTR	35663484	35663532	.	-	.	Parent=Os02t0829500-02
Chr02	irgsp1_rep	CDS	35663336	35663483	.	-	0	Parent=Os02t0829500-02
Chr02	irgsp1_rep	CDS	35663204	35663247	.	-	2	Parent=Os02t0829500-02
Chr02	irgsp1_rep	CDS	35663049	35663129	.	-	0	Parent=Os02t0829500-02
Chr02	irgsp1_rep	CDS	35662875	35662982	.	-	0	Parent=Os02t0829500-02
Chr02	irgsp1_rep	CDS	35662689	35662780	.	-	0	Parent=Os02t0829500-02
Chr02	irgsp1_rep	CDS	35662354	35662428	.	-	1	Parent=Os02t0829500-02
Chr02	irgsp1_rep	CDS	35662174	35662243	.	-	1	Parent=Os02t0829500-02
Chr02	irgsp1_rep	CDS	35661778	35661879	.	-	0	Parent=Os02t0829500-02
Chr02	irgsp1_rep	CDS	35661331	35661445	.	-	0	Parent=Os02t0829500-02
Chr02	irgsp1_rep	CDS	35661167	35661229	.	-	2	Parent=Os02t0829500-02
Chr02	irgsp1_rep	CDS	35660963	35661045	.	-	2	Parent=Os02t0829500-02
Chr02	irgsp1_rep	three_prime_UTR	35660775	35660962	.	-	.	Parent=Os02t0829500-02
Chr02	irgsp1_rep	mRNA	35660777	35663523	.	-	.	ID=Os02t0829500-03;Name=Os02t0829500-03;Locus_id=Os02g0829500;Note=Similar to Zn-dependent hydrolases%2C including glyoxylases.;Transcript_evidence=AK065244 (DDBJ%2C Best hit);ORF_evidence=B6UI84 (UniProt);NIAS_FLcDNA=J013002I14;Expression=AK065244;TENOR=Os02t0829500-03;KEGG=Os02t0829500-03
Chr02	irgsp1_rep	five_prime_UTR	35663484	35663523	.	-	.	Parent=Os02t0829500-03
Chr02	irgsp1_rep	CDS	35663336	35663483	.	-	0	Parent=Os02t0829500-03
Chr02	irgsp1_rep	CDS	35663204	35663247	.	-	2	Parent=Os02t0829500-03
Chr02	irgsp1_rep	CDS	35663068	35663129	.	-	0	Parent=Os02t0829500-03
Chr02	irgsp1_rep	CDS	35662875	35662934	.	-	1	Parent=Os02t0829500-03
Chr02	irgsp1_rep	CDS	35662720	35662780	.	-	1	Parent=Os02t0829500-03
Chr02	irgsp1_rep	three_prime_UTR	35662689	35662719	.	-	.	Parent=Os02t0829500-03
Chr02	irgsp1_rep	three_prime_UTR	35662354	35662428	.	-	.	Parent=Os02t0829500-03
Chr02	irgsp1_rep	three_prime_UTR	35662174	35662243	.	-	.	Parent=Os02t0829500-03
Chr02	irgsp1_rep	three_prime_UTR	35661778	35661879	.	-	.	Parent=Os02t0829500-03
Chr02	irgsp1_rep	three_prime_UTR	35661331	35661445	.	-	.	Parent=Os02t0829500-03
Chr02	irgsp1_rep	three_prime_UTR	35661167	35661229	.	-	.	Parent=Os02t0829500-03
Chr02	irgsp1_rep	three_prime_UTR	35660777	35661045	.	-	.	Parent=Os02t0829500-03
Chr02	irgsp1_rep	mRNA	35667571	35671732	.	-	.	ID=Os02t0829600-01;Name=Os02t0829600-01;Locus_id=Os02g0829600;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK069290 (DDBJ%2C Best hit);ORF_evidence=Q6K9T7 (UniProt);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J023013J02;Expression=AK069290;TENOR=Os02t0829600-01;KEGG=Os02t0829600-01
Chr02	irgsp1_rep	five_prime_UTR	35671633	35671732	.	-	.	Parent=Os02t0829600-01
Chr02	irgsp1_rep	CDS	35671346	35671632	.	-	0	Parent=Os02t0829600-01
Chr02	irgsp1_rep	CDS	35671150	35671275	.	-	1	Parent=Os02t0829600-01
Chr02	irgsp1_rep	CDS	35670845	35671037	.	-	1	Parent=Os02t0829600-01
Chr02	irgsp1_rep	CDS	35670485	35670627	.	-	0	Parent=Os02t0829600-01
Chr02	irgsp1_rep	CDS	35670164	35670338	.	-	1	Parent=Os02t0829600-01
Chr02	irgsp1_rep	CDS	35669887	35669948	.	-	0	Parent=Os02t0829600-01
Chr02	irgsp1_rep	CDS	35669434	35669515	.	-	1	Parent=Os02t0829600-01
Chr02	irgsp1_rep	CDS	35668833	35668890	.	-	0	Parent=Os02t0829600-01
Chr02	irgsp1_rep	CDS	35668609	35668739	.	-	2	Parent=Os02t0829600-01
Chr02	irgsp1_rep	CDS	35668423	35668515	.	-	0	Parent=Os02t0829600-01
Chr02	irgsp1_rep	CDS	35668263	35668333	.	-	0	Parent=Os02t0829600-01
Chr02	irgsp1_rep	CDS	35668000	35668147	.	-	1	Parent=Os02t0829600-01
Chr02	irgsp1_rep	three_prime_UTR	35667571	35667999	.	-	.	Parent=Os02t0829600-01
Chr02	irgsp1_rep	mRNA	35664929	35671730	.	-	.	ID=Os02t0829600-02;Name=Os02t0829600-02;Locus_id=Os02g0829600;Note=Similar to Sperm protamine P1 (Po1) [Contains: Sperm protamine P2 (Po2) (Main protamine)].;Transcript_evidence=AK065885 (DDBJ%2C Best hit);ORF_evidence=B6UI84 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Beta-lactamase-like (IPR001279);NIAS_FLcDNA=J013045A06;Expression=AK065885;TENOR=Os02t0829600-02;KEGG=Os02t0829600-02
Chr02	irgsp1_rep	five_prime_UTR	35671346	35671730	.	-	.	Parent=Os02t0829600-02
Chr02	irgsp1_rep	five_prime_UTR	35671150	35671275	.	-	.	Parent=Os02t0829600-02
Chr02	irgsp1_rep	five_prime_UTR	35670845	35671037	.	-	.	Parent=Os02t0829600-02
Chr02	irgsp1_rep	five_prime_UTR	35670485	35670627	.	-	.	Parent=Os02t0829600-02
Chr02	irgsp1_rep	five_prime_UTR	35670164	35670338	.	-	.	Parent=Os02t0829600-02
Chr02	irgsp1_rep	five_prime_UTR	35669887	35669948	.	-	.	Parent=Os02t0829600-02
Chr02	irgsp1_rep	five_prime_UTR	35669434	35669515	.	-	.	Parent=Os02t0829600-02
Chr02	irgsp1_rep	five_prime_UTR	35668833	35668890	.	-	.	Parent=Os02t0829600-02
Chr02	irgsp1_rep	five_prime_UTR	35668609	35668739	.	-	.	Parent=Os02t0829600-02
Chr02	irgsp1_rep	five_prime_UTR	35668423	35668515	.	-	.	Parent=Os02t0829600-02
Chr02	irgsp1_rep	five_prime_UTR	35668263	35668333	.	-	.	Parent=Os02t0829600-02
Chr02	irgsp1_rep	five_prime_UTR	35667588	35668147	.	-	.	Parent=Os02t0829600-02
Chr02	irgsp1_rep	CDS	35667365	35667587	.	-	0	Parent=Os02t0829600-02
Chr02	irgsp1_rep	CDS	35667235	35667278	.	-	2	Parent=Os02t0829600-02
Chr02	irgsp1_rep	CDS	35667067	35667147	.	-	0	Parent=Os02t0829600-02
Chr02	irgsp1_rep	CDS	35666893	35667000	.	-	0	Parent=Os02t0829600-02
Chr02	irgsp1_rep	CDS	35666695	35666786	.	-	0	Parent=Os02t0829600-02
Chr02	irgsp1_rep	CDS	35666385	35666459	.	-	1	Parent=Os02t0829600-02
Chr02	irgsp1_rep	CDS	35666194	35666263	.	-	1	Parent=Os02t0829600-02
Chr02	irgsp1_rep	CDS	35665892	35665993	.	-	0	Parent=Os02t0829600-02
Chr02	irgsp1_rep	CDS	35665575	35665689	.	-	0	Parent=Os02t0829600-02
Chr02	irgsp1_rep	CDS	35665411	35665473	.	-	2	Parent=Os02t0829600-02
Chr02	irgsp1_rep	CDS	35665166	35665263	.	-	2	Parent=Os02t0829600-02
Chr02	irgsp1_rep	three_prime_UTR	35664929	35665165	.	-	.	Parent=Os02t0829600-02
Chr02	irgsp1_rep	mRNA	35674827	35676413	.	-	.	ID=Os02t0829800-01;Name=Os02t0829800-01;Locus_id=Os02g0829800;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK242435 (DDBJ%2C Best hit);ORF_evidence=NP_001048609.1 (RefSeq);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J080093E15;TENOR=Os02t0829800-01;KEGG=Os02t0829800-01
Chr02	irgsp1_rep	five_prime_UTR	35676354	35676413	.	-	.	Parent=Os02t0829800-01
Chr02	irgsp1_rep	CDS	35675082	35676353	.	-	0	Parent=Os02t0829800-01
Chr02	irgsp1_rep	three_prime_UTR	35674827	35675081	.	-	.	Parent=Os02t0829800-01
Chr02	irgsp1_rep	mRNA	35676813	35678078	.	-	.	ID=Os02t0829850-00;Name=Os02t0829850-00;Locus_id=Os02g0829850;Note=Conserved hypothetical protein.;Transcript_evidence=CT835499 (DDBJ%2C Best hit);ORF_evidence=Q6K9T4 (UniProt);TENOR=Os02t0829850-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	35678055	35678078	.	-	.	Parent=Os02t0829850-00
Chr02	irgsp1_rep	CDS	35677818	35678054	.	-	0	Parent=Os02t0829850-00
Chr02	irgsp1_rep	three_prime_UTR	35677705	35677817	.	-	.	Parent=Os02t0829850-00
Chr02	irgsp1_rep	three_prime_UTR	35677657	35677690	.	-	.	Parent=Os02t0829850-00
Chr02	irgsp1_rep	three_prime_UTR	35676953	35677644	.	-	.	Parent=Os02t0829850-00
Chr02	irgsp1_rep	three_prime_UTR	35676813	35676941	.	-	.	Parent=Os02t0829850-00
Chr02	irgsp1_rep	mRNA	35679730	35681439	.	-	.	ID=Os02t0829900-01;Name=Os02t0829900-01;Locus_id=Os02g0829900;Note=Similar to BRICK1.;Transcript_evidence=AK120917 (DDBJ%2C Best hit);ORF_evidence=NP_001105190.1 (RefSeq);InterPro=Matrilin%2C coiled-coil trimerisation domain (IPR019466);NIAS_FLcDNA=J023034L01;Expression=AK120917;TENOR=Os02t0829900-01;KEGG=Os02t0829900-01
Chr02	irgsp1_rep	five_prime_UTR	35681331	35681439	.	-	.	Parent=Os02t0829900-01
Chr02	irgsp1_rep	CDS	35681192	35681330	.	-	0	Parent=Os02t0829900-01
Chr02	irgsp1_rep	CDS	35680005	35680126	.	-	2	Parent=Os02t0829900-01
Chr02	irgsp1_rep	three_prime_UTR	35679730	35680004	.	-	.	Parent=Os02t0829900-01
Chr02	irgsp1_rep	mRNA	35681629	35683538	.	+	.	ID=Os02t0830000-01;Name=Os02t0830000-01;Locus_id=Os02g0830000;Oryzabase Gene Symbol Synonym(s)=OsSTA84;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK101841 (DDBJ%2C Best hit);ORF_evidence=A2XBA2 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033069G13;Oryzabase=19382;Expression=AK101841;TENOR=Os02t0830000-01;KEGG=Os02t0830000-01
Chr02	irgsp1_rep	five_prime_UTR	35681629	35681653	.	+	.	Parent=Os02t0830000-01
Chr02	irgsp1_rep	CDS	35681654	35683156	.	+	0	Parent=Os02t0830000-01
Chr02	irgsp1_rep	three_prime_UTR	35683157	35683538	.	+	.	Parent=Os02t0830000-01
Chr02	irgsp1_rep	mRNA	35683512	35688472	.	-	.	ID=Os02t0830100-01;Name=Os02t0830100-01;Locus_id=Os02g0830100;Note=Similar to Oligopeptidase A.;Transcript_evidence=AK065077 (DDBJ%2C Best hit);ORF_evidence=NP_001141422.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: metalloendopeptidase activity (GO:0004222);InterPro=Peptidase M3A/M3B (IPR001567),Neurolysin/Thimet oligopeptidase%2C domain 2 (IPR024077),Metallopeptidase%2C catalytic domain (IPR024079),Neurolysin/Thimet oligopeptidase%2C N-terminal (IPR024080);NIAS_FLcDNA=J013001K16;TENOR=Os02t0830100-01
Chr02	irgsp1_rep	five_prime_UTR	35688456	35688472	.	-	.	Parent=Os02t0830100-01
Chr02	irgsp1_rep	CDS	35688132	35688455	.	-	0	Parent=Os02t0830100-01
Chr02	irgsp1_rep	CDS	35687875	35688042	.	-	0	Parent=Os02t0830100-01
Chr02	irgsp1_rep	CDS	35687665	35687788	.	-	0	Parent=Os02t0830100-01
Chr02	irgsp1_rep	CDS	35687382	35687458	.	-	2	Parent=Os02t0830100-01
Chr02	irgsp1_rep	CDS	35686719	35686862	.	-	0	Parent=Os02t0830100-01
Chr02	irgsp1_rep	CDS	35686410	35686640	.	-	0	Parent=Os02t0830100-01
Chr02	irgsp1_rep	CDS	35686237	35686327	.	-	0	Parent=Os02t0830100-01
Chr02	irgsp1_rep	CDS	35685943	35686064	.	-	2	Parent=Os02t0830100-01
Chr02	irgsp1_rep	CDS	35685659	35685766	.	-	0	Parent=Os02t0830100-01
Chr02	irgsp1_rep	CDS	35685334	35685579	.	-	0	Parent=Os02t0830100-01
Chr02	irgsp1_rep	CDS	35684960	35685105	.	-	0	Parent=Os02t0830100-01
Chr02	irgsp1_rep	CDS	35684761	35684878	.	-	1	Parent=Os02t0830100-01
Chr02	irgsp1_rep	CDS	35684448	35684607	.	-	0	Parent=Os02t0830100-01
Chr02	irgsp1_rep	CDS	35684333	35684364	.	-	2	Parent=Os02t0830100-01
Chr02	irgsp1_rep	CDS	35684182	35684247	.	-	0	Parent=Os02t0830100-01
Chr02	irgsp1_rep	CDS	35683912	35683983	.	-	0	Parent=Os02t0830100-01
Chr02	irgsp1_rep	CDS	35683691	35683774	.	-	0	Parent=Os02t0830100-01
Chr02	irgsp1_rep	three_prime_UTR	35683512	35683690	.	-	.	Parent=Os02t0830100-01
Chr02	irgsp1_rep	mRNA	35683512	35686848	.	-	.	ID=Os02t0830100-02;Name=Os02t0830100-02;Locus_id=Os02g0830100;Note=Similar to Oligopeptidase A.;Transcript_evidence=AK103668 (DDBJ%2C Best hit);ORF_evidence=NP_001141422.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: metalloendopeptidase activity (GO:0004222);InterPro=Peptidase M3A/M3B (IPR001567),Neurolysin/Thimet oligopeptidase%2C domain 2 (IPR024077),Metallopeptidase%2C catalytic domain (IPR024079);NIAS_FLcDNA=J033135L17;Expression=AK103668;TENOR=Os02t0830100-02;KEGG=Os02t0830100-02 (EC:3.4.24.70)
Chr02	irgsp1_rep	five_prime_UTR	35686848	35686848	.	-	.	Parent=Os02t0830100-02
Chr02	irgsp1_rep	CDS	35686719	35686847	.	-	0	Parent=Os02t0830100-02
Chr02	irgsp1_rep	CDS	35686410	35686640	.	-	0	Parent=Os02t0830100-02
Chr02	irgsp1_rep	CDS	35686237	35686327	.	-	0	Parent=Os02t0830100-02
Chr02	irgsp1_rep	CDS	35685943	35686064	.	-	2	Parent=Os02t0830100-02
Chr02	irgsp1_rep	CDS	35685659	35685766	.	-	0	Parent=Os02t0830100-02
Chr02	irgsp1_rep	CDS	35685334	35685579	.	-	0	Parent=Os02t0830100-02
Chr02	irgsp1_rep	CDS	35684960	35685105	.	-	0	Parent=Os02t0830100-02
Chr02	irgsp1_rep	CDS	35684761	35684878	.	-	1	Parent=Os02t0830100-02
Chr02	irgsp1_rep	CDS	35684448	35684607	.	-	0	Parent=Os02t0830100-02
Chr02	irgsp1_rep	CDS	35684333	35684364	.	-	2	Parent=Os02t0830100-02
Chr02	irgsp1_rep	CDS	35684182	35684247	.	-	0	Parent=Os02t0830100-02
Chr02	irgsp1_rep	CDS	35683912	35683983	.	-	0	Parent=Os02t0830100-02
Chr02	irgsp1_rep	CDS	35683691	35683774	.	-	0	Parent=Os02t0830100-02
Chr02	irgsp1_rep	three_prime_UTR	35683512	35683690	.	-	.	Parent=Os02t0830100-02
Chr02	irgsp1_rep	mRNA	35683512	35685695	.	-	.	ID=Os02t0830100-03;Name=Os02t0830100-03;Locus_id=Os02g0830100;Note=Similar to predicted protein.;Transcript_evidence=AK059746 (DDBJ%2C Best hit);ORF_evidence=NP_001141422.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: metalloendopeptidase activity (GO:0004222);InterPro=Peptidase M3A/M3B (IPR001567),Neurolysin/Thimet oligopeptidase%2C domain 2 (IPR024077),Metallopeptidase%2C catalytic domain (IPR024079);NIAS_FLcDNA=006-202-H11;Expression=AK059746;TENOR=Os02t0830100-03;KEGG=Os02t0830100-03 (EC:3.4.24.70)
Chr02	irgsp1_rep	five_prime_UTR	35685695	35685695	.	-	.	Parent=Os02t0830100-03
Chr02	irgsp1_rep	CDS	35685659	35685694	.	-	0	Parent=Os02t0830100-03
Chr02	irgsp1_rep	CDS	35685334	35685579	.	-	0	Parent=Os02t0830100-03
Chr02	irgsp1_rep	CDS	35684960	35685105	.	-	0	Parent=Os02t0830100-03
Chr02	irgsp1_rep	CDS	35684761	35684878	.	-	1	Parent=Os02t0830100-03
Chr02	irgsp1_rep	CDS	35684448	35684607	.	-	0	Parent=Os02t0830100-03
Chr02	irgsp1_rep	CDS	35684333	35684364	.	-	2	Parent=Os02t0830100-03
Chr02	irgsp1_rep	CDS	35684182	35684247	.	-	0	Parent=Os02t0830100-03
Chr02	irgsp1_rep	CDS	35683912	35683983	.	-	0	Parent=Os02t0830100-03
Chr02	irgsp1_rep	CDS	35683691	35683774	.	-	0	Parent=Os02t0830100-03
Chr02	irgsp1_rep	three_prime_UTR	35683512	35683690	.	-	.	Parent=Os02t0830100-03
Chr02	irgsp1_rep	mRNA	35683598	35684599	.	-	.	ID=Os02t0830100-04;Name=Os02t0830100-04;Locus_id=Os02g0830100;Note=Similar to predicted protein.;Transcript_evidence=AK061671 (DDBJ%2C Best hit);ORF_evidence=NP_001141422.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: metalloendopeptidase activity (GO:0004222);InterPro=Peptidase M3A/M3B (IPR001567),Neurolysin/Thimet oligopeptidase%2C domain 2 (IPR024077);NIAS_FLcDNA=001-036-G04;Expression=AK061671;TENOR=Os02t0830100-04;KEGG=Os02t0830100-04 (EC:3.4.24.70)
Chr02	irgsp1_rep	five_prime_UTR	35684599	35684599	.	-	.	Parent=Os02t0830100-04
Chr02	irgsp1_rep	CDS	35684448	35684598	.	-	0	Parent=Os02t0830100-04
Chr02	irgsp1_rep	CDS	35684333	35684364	.	-	2	Parent=Os02t0830100-04
Chr02	irgsp1_rep	CDS	35684182	35684247	.	-	0	Parent=Os02t0830100-04
Chr02	irgsp1_rep	CDS	35683912	35683983	.	-	0	Parent=Os02t0830100-04
Chr02	irgsp1_rep	CDS	35683691	35683774	.	-	0	Parent=Os02t0830100-04
Chr02	irgsp1_rep	three_prime_UTR	35683598	35683690	.	-	.	Parent=Os02t0830100-04
Chr02	irgsp1_rep	mRNA	35683512	35688440	.	-	.	ID=Os02t0830100-05;Name=Os02t0830100-05;Locus_id=Os02g0830100;Note=Similar to protease PrlC candidate1.;Transcript_evidence=AK070094 (DDBJ%2C Best hit);ORF_evidence=NP_001141422.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: metalloendopeptidase activity (GO:0004222);InterPro=Peptidase M3A/M3B (IPR001567),Neurolysin/Thimet oligopeptidase%2C domain 2 (IPR024077),Metallopeptidase%2C catalytic domain (IPR024079),Neurolysin/Thimet oligopeptidase%2C N-terminal (IPR024080);NIAS_FLcDNA=J023040J23;TENOR=Os02t0830100-05
Chr02	irgsp1_rep	five_prime_UTR	35688240	35688440	.	-	.	Parent=Os02t0830100-05
Chr02	irgsp1_rep	CDS	35688132	35688239	.	-	0	Parent=Os02t0830100-05
Chr02	irgsp1_rep	CDS	35687875	35688042	.	-	0	Parent=Os02t0830100-05
Chr02	irgsp1_rep	CDS	35687665	35687788	.	-	0	Parent=Os02t0830100-05
Chr02	irgsp1_rep	CDS	35687382	35687458	.	-	2	Parent=Os02t0830100-05
Chr02	irgsp1_rep	CDS	35686719	35686862	.	-	0	Parent=Os02t0830100-05
Chr02	irgsp1_rep	CDS	35686410	35686640	.	-	0	Parent=Os02t0830100-05
Chr02	irgsp1_rep	CDS	35686237	35686327	.	-	0	Parent=Os02t0830100-05
Chr02	irgsp1_rep	CDS	35685943	35686064	.	-	2	Parent=Os02t0830100-05
Chr02	irgsp1_rep	CDS	35685659	35685766	.	-	0	Parent=Os02t0830100-05
Chr02	irgsp1_rep	CDS	35685334	35685579	.	-	0	Parent=Os02t0830100-05
Chr02	irgsp1_rep	CDS	35684960	35685105	.	-	0	Parent=Os02t0830100-05
Chr02	irgsp1_rep	CDS	35684761	35684878	.	-	1	Parent=Os02t0830100-05
Chr02	irgsp1_rep	CDS	35684448	35684607	.	-	0	Parent=Os02t0830100-05
Chr02	irgsp1_rep	CDS	35684333	35684364	.	-	2	Parent=Os02t0830100-05
Chr02	irgsp1_rep	CDS	35684182	35684247	.	-	0	Parent=Os02t0830100-05
Chr02	irgsp1_rep	CDS	35683912	35683983	.	-	0	Parent=Os02t0830100-05
Chr02	irgsp1_rep	CDS	35683691	35683774	.	-	0	Parent=Os02t0830100-05
Chr02	irgsp1_rep	three_prime_UTR	35683512	35683690	.	-	.	Parent=Os02t0830100-05
Chr02	irgsp1_rep	mRNA	35689553	35690346	.	-	.	ID=Os02t0830200-01;Name=Os02t0830200-01;Locus_id=Os02g0830200;RAP-DB Gene Symbol Synonym(s)=RR3%2C OSRR3%2C OsRR3%2C rr3%2C Rra7%2C OsRRA7;RAP-DB Gene Name Synonym(s)=A-TYPE RESPONSE REGULATOR 3%2C A-TYPE response regulator 3%2C Type A response regulator 3%2C A-type RR 7;CGSNL Gene Symbol=RR3;CGSNL Gene Name=A-TYPE RESPONSE REGULATOR 3;Oryzabase Gene Symbol Synonym(s)=OSRR3%2C OsRR3%2C rr3%2C Rra7%2C OsRRA7;Oryzabase Gene Name Synonym(s)=A-TYPE response regulator 3%2C Type A response regulator 3%2C A-type RR 7;Note=A-type response regulator%2C Cytokinin signaling;Transcript_evidence=AB249655 (Genbank),BR000313 (Genbank);ORF_evidence=Q6K9T0 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: two-component response regulator activity (GO:0000156);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),CheY-like superfamily (IPR011006);Manual Curation=April 20%2C 2010;Literature_PMID=16919402,16472405,17293362;Oryzabase=8160;TENOR=Os02t0830200-01
Chr02	irgsp1_rep	CDS	35690238	35690346	.	-	0	Parent=Os02t0830200-01
Chr02	irgsp1_rep	CDS	35689973	35690019	.	-	2	Parent=Os02t0830200-01
Chr02	irgsp1_rep	CDS	35689804	35689881	.	-	0	Parent=Os02t0830200-01
Chr02	irgsp1_rep	CDS	35689553	35689714	.	-	0	Parent=Os02t0830200-01
Chr02	irgsp1_rep	mRNA	35693609	35699417	.	-	.	ID=Os02t0830300-00;Name=Os02t0830300-00;Locus_id=Os02g0830300;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2XBA5 (UniProt);TENOR=Os02t0830300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	35699199	35699417	.	-	0	Parent=Os02t0830300-00
Chr02	irgsp1_rep	CDS	35698765	35698906	.	-	0	Parent=Os02t0830300-00
Chr02	irgsp1_rep	CDS	35698453	35698556	.	-	2	Parent=Os02t0830300-00
Chr02	irgsp1_rep	CDS	35696648	35698293	.	-	0	Parent=Os02t0830300-00
Chr02	irgsp1_rep	CDS	35695450	35696498	.	-	1	Parent=Os02t0830300-00
Chr02	irgsp1_rep	CDS	35694451	35695269	.	-	2	Parent=Os02t0830300-00
Chr02	irgsp1_rep	CDS	35694115	35694227	.	-	2	Parent=Os02t0830300-00
Chr02	irgsp1_rep	CDS	35693609	35693980	.	-	0	Parent=Os02t0830300-00
Chr02	irgsp1_rep	mRNA	35705713	35710799	.	-	.	ID=Os02t0830700-01;Name=Os02t0830700-01;Locus_id=Os02g0830700;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=AK101172 (DDBJ%2C Best hit);ORF_evidence=B6SW77 (UniProt);InterPro=Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J033028O18;Expression=AK101172;TENOR=Os02t0830700-01;KEGG=Os02t0830700-01
Chr02	irgsp1_rep	five_prime_UTR	35710730	35710799	.	-	.	Parent=Os02t0830700-01
Chr02	irgsp1_rep	five_prime_UTR	35710558	35710721	.	-	.	Parent=Os02t0830700-01
Chr02	irgsp1_rep	CDS	35710071	35710557	.	-	0	Parent=Os02t0830700-01
Chr02	irgsp1_rep	CDS	35709174	35709258	.	-	2	Parent=Os02t0830700-01
Chr02	irgsp1_rep	CDS	35706381	35706762	.	-	1	Parent=Os02t0830700-01
Chr02	irgsp1_rep	three_prime_UTR	35705713	35706380	.	-	.	Parent=Os02t0830700-01
Chr02	irgsp1_rep	mRNA	35709865	35710302	.	+	.	ID=Os02t0830750-00;Name=Os02t0830750-00;Locus_id=Os02g0830750;Note=Hypothetical protein.;Transcript_evidence=BT086967 (DDBJ);ORF_evidence=longestORF;TENOR=Os02t0830750-00
Chr02	irgsp1_rep	five_prime_UTR	35709865	35710074	.	+	.	Parent=Os02t0830750-00
Chr02	irgsp1_rep	CDS	35710075	35710302	.	+	0	Parent=Os02t0830750-00
Chr02	irgsp1_rep	mRNA	35717802	35723808	.	+	.	ID=Os02t0830801-01;Name=Os02t0830801-01;Locus_id=Os02g0830801;Note=Similar to binding.;Transcript_evidence=AK289023 (DDBJ%2C Best hit);ORF_evidence=NP_197072.3 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J090090H19;TENOR=Os02t0830801-01;KEGG=Os02t0830801-01
Chr02	irgsp1_rep	five_prime_UTR	35717802	35718049	.	+	.	Parent=Os02t0830801-01
Chr02	irgsp1_rep	CDS	35718050	35718145	.	+	0	Parent=Os02t0830801-01
Chr02	irgsp1_rep	CDS	35718914	35719032	.	+	0	Parent=Os02t0830801-01
Chr02	irgsp1_rep	CDS	35719177	35719222	.	+	1	Parent=Os02t0830801-01
Chr02	irgsp1_rep	CDS	35719468	35719540	.	+	0	Parent=Os02t0830801-01
Chr02	irgsp1_rep	CDS	35719622	35719679	.	+	2	Parent=Os02t0830801-01
Chr02	irgsp1_rep	CDS	35719959	35720054	.	+	1	Parent=Os02t0830801-01
Chr02	irgsp1_rep	CDS	35720351	35720468	.	+	1	Parent=Os02t0830801-01
Chr02	irgsp1_rep	CDS	35720913	35721179	.	+	0	Parent=Os02t0830801-01
Chr02	irgsp1_rep	CDS	35721530	35721631	.	+	0	Parent=Os02t0830801-01
Chr02	irgsp1_rep	CDS	35721809	35722166	.	+	0	Parent=Os02t0830801-01
Chr02	irgsp1_rep	CDS	35722257	35722370	.	+	2	Parent=Os02t0830801-01
Chr02	irgsp1_rep	CDS	35722552	35723183	.	+	2	Parent=Os02t0830801-01
Chr02	irgsp1_rep	CDS	35723402	35723680	.	+	0	Parent=Os02t0830801-01
Chr02	irgsp1_rep	three_prime_UTR	35723681	35723808	.	+	.	Parent=Os02t0830801-01
Chr02	irgsp1_rep	mRNA	35728887	35730544	.	+	.	ID=Os02t0830900-01;Name=Os02t0830900-01;Locus_id=Os02g0830900;Note=Similar to binding.;Transcript_evidence=AK060482 (DDBJ%2C Best hit);ORF_evidence=NP_197072.3 (RefSeq);NIAS_FLcDNA=001-012-G12;TENOR=Os02t0830900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	35728887	35728887	.	+	.	Parent=Os02t0830900-01
Chr02	irgsp1_rep	CDS	35728888	35730018	.	+	0	Parent=Os02t0830900-01
Chr02	irgsp1_rep	three_prime_UTR	35730019	35730544	.	+	.	Parent=Os02t0830900-01
Chr02	irgsp1_rep	mRNA	35739097	35742494	.	-	.	ID=Os02t0831000-00;Name=Os02t0831000-00;Locus_id=Os02g0831000;Note=Hypothetical protein.;Transcript_evidence=tplb0044a09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0831000-00
Chr02	irgsp1_rep	five_prime_UTR	35740817	35742494	.	-	.	Parent=Os02t0831000-00
Chr02	irgsp1_rep	CDS	35740443	35740816	.	-	0	Parent=Os02t0831000-00
Chr02	irgsp1_rep	CDS	35740213	35740219	.	-	1	Parent=Os02t0831000-00
Chr02	irgsp1_rep	three_prime_UTR	35740117	35740212	.	-	.	Parent=Os02t0831000-00
Chr02	irgsp1_rep	three_prime_UTR	35739097	35739179	.	-	.	Parent=Os02t0831000-00
Chr02	irgsp1_rep	mRNA	35741026	35742581	.	+	.	ID=Os02t0831100-01;Name=Os02t0831100-01;Locus_id=Os02g0831100;CGSNL Gene Symbol=C3H19;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19;Oryzabase Gene Symbol Synonym(s)=OsC3H19;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 19;Note=Conserved hypothetical protein.;Transcript_evidence=AK060600 (DDBJ%2C Best hit);ORF_evidence=Q6K977 (UniProt);NIAS_FLcDNA=001-024-H02;Oryzabase=8582;TENOR=Os02t0831100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	35741026	35741026	.	+	.	Parent=Os02t0831100-01
Chr02	irgsp1_rep	CDS	35741027	35742196	.	+	0	Parent=Os02t0831100-01
Chr02	irgsp1_rep	three_prime_UTR	35742197	35742581	.	+	.	Parent=Os02t0831100-01
Chr02	irgsp1_rep	mRNA	35742798	35744576	.	-	.	ID=Os02t0831200-01;Name=Os02t0831200-01;Locus_id=Os02g0831200;Note=Protein of unknown function DUF177 family protein.;Transcript_evidence=AK098955 (DDBJ%2C Best hit),AK061847 (DDBJ%2C Best hit);ORF_evidence=Q6K976 (UniProt);InterPro=Protein of unknown function DUF177 (IPR003772);NIAS_FLcDNA=J013060F18,001-040-F03;Expression=AK098955;TENOR=Os02t0831200-01;KEGG=Os02t0831200-01
Chr02	irgsp1_rep	five_prime_UTR	35744576	35744576	.	-	.	Parent=Os02t0831200-01
Chr02	irgsp1_rep	CDS	35744058	35744575	.	-	0	Parent=Os02t0831200-01
Chr02	irgsp1_rep	CDS	35742912	35743329	.	-	1	Parent=Os02t0831200-01
Chr02	irgsp1_rep	three_prime_UTR	35742798	35742911	.	-	.	Parent=Os02t0831200-01
Chr02	irgsp1_rep	mRNA	35747235	35751292	.	-	.	ID=Os02t0831300-01;Name=Os02t0831300-01;Locus_id=Os02g0831300;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=AK101449 (DDBJ%2C Best hit);ORF_evidence=NP_001147948.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Domain of unknown function DUF1716%2C eukaryotic (IPR013180),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033039M15;TENOR=Os02t0831300-01
Chr02	irgsp1_rep	five_prime_UTR	35751183	35751292	.	-	.	Parent=Os02t0831300-01
Chr02	irgsp1_rep	CDS	35750151	35751182	.	-	0	Parent=Os02t0831300-01
Chr02	irgsp1_rep	CDS	35749344	35749428	.	-	0	Parent=Os02t0831300-01
Chr02	irgsp1_rep	CDS	35748454	35748550	.	-	2	Parent=Os02t0831300-01
Chr02	irgsp1_rep	CDS	35748302	35748365	.	-	1	Parent=Os02t0831300-01
Chr02	irgsp1_rep	CDS	35748108	35748164	.	-	0	Parent=Os02t0831300-01
Chr02	irgsp1_rep	CDS	35747955	35747992	.	-	0	Parent=Os02t0831300-01
Chr02	irgsp1_rep	CDS	35747779	35747860	.	-	1	Parent=Os02t0831300-01
Chr02	irgsp1_rep	CDS	35747480	35747575	.	-	0	Parent=Os02t0831300-01
Chr02	irgsp1_rep	three_prime_UTR	35747235	35747479	.	-	.	Parent=Os02t0831300-01
Chr02	irgsp1_rep	mRNA	35747235	35751180	.	-	.	ID=Os02t0831300-02;Name=Os02t0831300-02;Locus_id=Os02g0831300;Note=Similar to beta-catenin-like protein 1.;Transcript_evidence=AK106522 (DDBJ%2C Best hit);ORF_evidence=NP_001147948.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Domain of unknown function DUF1716%2C eukaryotic (IPR013180),Armadillo-type fold (IPR016024);NIAS_FLcDNA=002-107-D01;TENOR=Os02t0831300-02
Chr02	irgsp1_rep	five_prime_UTR	35751180	35751180	.	-	.	Parent=Os02t0831300-02
Chr02	irgsp1_rep	CDS	35750151	35751179	.	-	0	Parent=Os02t0831300-02
Chr02	irgsp1_rep	CDS	35749344	35749428	.	-	0	Parent=Os02t0831300-02
Chr02	irgsp1_rep	CDS	35748454	35748550	.	-	2	Parent=Os02t0831300-02
Chr02	irgsp1_rep	CDS	35748302	35748365	.	-	1	Parent=Os02t0831300-02
Chr02	irgsp1_rep	CDS	35748108	35748164	.	-	0	Parent=Os02t0831300-02
Chr02	irgsp1_rep	CDS	35747955	35747992	.	-	0	Parent=Os02t0831300-02
Chr02	irgsp1_rep	CDS	35747779	35747860	.	-	1	Parent=Os02t0831300-02
Chr02	irgsp1_rep	CDS	35747480	35747575	.	-	0	Parent=Os02t0831300-02
Chr02	irgsp1_rep	three_prime_UTR	35747235	35747479	.	-	.	Parent=Os02t0831300-02
Chr02	irgsp1_rep	mRNA	35751488	35753307	.	-	.	ID=Os02t0831400-01;Name=Os02t0831400-01;Locus_id=Os02g0831400;Oryzabase Gene Symbol Synonym(s)=SIP16;Oryzabase Gene Name Synonym(s)=SKIP interacting protein 16%2C SKIPa-interacting protein 16%2C SKIPa-interacting protein 16;Note=Similar to SKIP interacting protein 16.;Transcript_evidence=AK122003 (DDBJ%2C Best hit);ORF_evidence=B8Q8A2 (UniProt);NIAS_FLcDNA=J033110K17;Oryzabase=9948;TENOR=Os02t0831400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	CDS	35753266	35753307	.	-	0	Parent=Os02t0831400-01
Chr02	irgsp1_rep	CDS	35752951	35753163	.	-	0	Parent=Os02t0831400-01
Chr02	irgsp1_rep	CDS	35752366	35752449	.	-	0	Parent=Os02t0831400-01
Chr02	irgsp1_rep	CDS	35752137	35752262	.	-	0	Parent=Os02t0831400-01
Chr02	irgsp1_rep	CDS	35751910	35752050	.	-	0	Parent=Os02t0831400-01
Chr02	irgsp1_rep	three_prime_UTR	35751488	35751909	.	-	.	Parent=Os02t0831400-01
Chr02	irgsp1_rep	mRNA	35754946	35761216	.	+	.	ID=Os02t0831500-01;Name=Os02t0831500-01;Locus_id=Os02g0831500;CGSNL Gene Symbol=RSUS6;CGSNL Gene Name=SUCROSE SYNTHASE 6;Oryzabase Gene Symbol Synonym(s)=SUS6%2C SS6%2C OsScS6%2C RSs6%2C RSus6%2C OsSUS6;Oryzabase Gene Name Synonym(s)=Rice sucrose synthase-6%2C Sucrose synthase 6%2C Sucrose-UDP glucosyltransferase 6%2C Sucrose synthase-6%2C rice SuSy gene 6;Note=Similar to Sucrose synthase.;Transcript_evidence=AK065549 (DDBJ%2C Best hit);ORF_evidence=Q01KW8 (UniProt);GO=Biological Process: sucrose metabolic process (GO:0005985),Biological Process: biosynthetic process (GO:0009058),Molecular Function: sucrose synthase activity (GO:0016157);InterPro=Sucrose synthase (IPR000368),Glycosyl transferase%2C family 1 (IPR001296),Sucrose synthase%2C plant/cyanobacteria (IPR012820);NIAS_FLcDNA=J013028P05;Oryzabase=14342;Expression=AK065549;TENOR=Os02t0831500-01;KEGG=Os02t0831500-01 (EC:2.4.1.13)
Chr02	irgsp1_rep	five_prime_UTR	35754946	35755135	.	+	.	Parent=Os02t0831500-01
Chr02	irgsp1_rep	CDS	35755136	35755363	.	+	0	Parent=Os02t0831500-01
Chr02	irgsp1_rep	CDS	35755438	35755592	.	+	0	Parent=Os02t0831500-01
Chr02	irgsp1_rep	CDS	35755724	35756032	.	+	1	Parent=Os02t0831500-01
Chr02	irgsp1_rep	CDS	35756122	35756434	.	+	1	Parent=Os02t0831500-01
Chr02	irgsp1_rep	CDS	35758499	35758675	.	+	0	Parent=Os02t0831500-01
Chr02	irgsp1_rep	CDS	35758788	35758904	.	+	0	Parent=Os02t0831500-01
Chr02	irgsp1_rep	CDS	35759039	35759205	.	+	0	Parent=Os02t0831500-01
Chr02	irgsp1_rep	CDS	35759307	35759531	.	+	1	Parent=Os02t0831500-01
Chr02	irgsp1_rep	CDS	35759634	35759955	.	+	1	Parent=Os02t0831500-01
Chr02	irgsp1_rep	CDS	35760049	35760293	.	+	0	Parent=Os02t0831500-01
Chr02	irgsp1_rep	CDS	35760500	35760638	.	+	1	Parent=Os02t0831500-01
Chr02	irgsp1_rep	CDS	35760719	35760862	.	+	0	Parent=Os02t0831500-01
Chr02	irgsp1_rep	three_prime_UTR	35760863	35760915	.	+	.	Parent=Os02t0831500-01
Chr02	irgsp1_rep	three_prime_UTR	35761016	35761216	.	+	.	Parent=Os02t0831500-01
Chr02	irgsp1_rep	mRNA	35755026	35756563	.	+	.	ID=Os02t0831500-02;Name=Os02t0831500-02;Locus_id=Os02g0831500;CGSNL Gene Symbol=RSUS6;CGSNL Gene Name=SUCROSE SYNTHASE 6;Oryzabase Gene Symbol Synonym(s)=SUS6%2C SS6%2C OsScS6%2C RSs6%2C RSus6%2C OsSUS6;Oryzabase Gene Name Synonym(s)=Rice sucrose synthase-6%2C Sucrose synthase 6%2C Sucrose-UDP glucosyltransferase 6%2C Sucrose synthase-6%2C rice SuSy gene 6;Note=Similar to H0211A12.6 protein.;Transcript_evidence=AK061268 (DDBJ%2C Best hit);ORF_evidence=Q01KW8 (UniProt);GO=Biological Process: sucrose metabolic process (GO:0005985);InterPro=Sucrose synthase (IPR000368);NIAS_FLcDNA=006-212-D05;Oryzabase=14342;Expression=AK061268;TENOR=Os02t0831500-02;KEGG=Os02t0831500-02 (EC:2.4.1.13)
Chr02	irgsp1_rep	five_prime_UTR	35755026	35755135	.	+	.	Parent=Os02t0831500-02
Chr02	irgsp1_rep	CDS	35755136	35755483	.	+	0	Parent=Os02t0831500-02
Chr02	irgsp1_rep	three_prime_UTR	35755484	35756563	.	+	.	Parent=Os02t0831500-02
Chr02	irgsp1_rep	mRNA	35756121	35760296	.	-	.	ID=Os02t0831550-00;Name=Os02t0831550-00;Locus_id=Os02g0831550;Note=Hypothetical protein.;Transcript_evidence=tplb0054p19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0831550-00
Chr02	irgsp1_rep	five_prime_UTR	35760035	35760296	.	-	.	Parent=Os02t0831550-00
Chr02	irgsp1_rep	five_prime_UTR	35759650	35759945	.	-	.	Parent=Os02t0831550-00
Chr02	irgsp1_rep	five_prime_UTR	35759338	35759543	.	-	.	Parent=Os02t0831550-00
Chr02	irgsp1_rep	five_prime_UTR	35759037	35759237	.	-	.	Parent=Os02t0831550-00
Chr02	irgsp1_rep	five_prime_UTR	35758775	35758899	.	-	.	Parent=Os02t0831550-00
Chr02	irgsp1_rep	five_prime_UTR	35758648	35758657	.	-	.	Parent=Os02t0831550-00
Chr02	irgsp1_rep	CDS	35758490	35758647	.	-	0	Parent=Os02t0831550-00
Chr02	irgsp1_rep	CDS	35756344	35756428	.	-	1	Parent=Os02t0831550-00
Chr02	irgsp1_rep	three_prime_UTR	35756121	35756343	.	-	.	Parent=Os02t0831550-00
Chr02	irgsp1_rep	mRNA	35761332	35768388	.	-	.	ID=Os02t0831600-01;Name=Os02t0831600-01;Locus_id=Os02g0831600;RAP-DB Gene Symbol Synonym(s)=OsAGO1%2C AGO1;RAP-DB Gene Name Synonym(s)=Argonaute1;CGSNL Gene Symbol=AGO1C;CGSNL Gene Name=ARGONAUTE 1C;Oryzabase Gene Symbol Synonym(s)=OsAGO1c%2C OsAGO1%2C AGO1%2C AGO1c;Oryzabase Gene Name Synonym(s)=Protein argonaute 1C%2C Protein argonaute 1%2C argonaute1;Note=Component of the RNA-induced silencing complex (RISC)%2C osa-miR168a target gene%2C Regulation of seed vigor;Transcript_evidence=AK103279;ORF_evidence=Q6K972;GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515);InterPro=PAZ domain superfamily (IPR036085),Ribonuclease H-like superfamily (IPR012337),Ribonuclease H superfamily (IPR036397),Protein argonaute%2C N-terminal (IPR032474),Argonaute%2C linker 1 domain (IPR014811),PAZ domain (IPR003100),Argonaute linker 2 domain (IPR032472),Protein argonaute%2C Mid domain (IPR032473),Piwi domain (IPR003165);NIAS_FLcDNA=J033124L10;Manual Curation=September 24%2C 2019;Literature_PMID=30791202;Oryzabase=8270;Expression=AK103279;TENOR=Os02t0831600-01;KEGG=Os02t0831600-01
Chr02	irgsp1_rep	five_prime_UTR	35768270	35768388	.	-	.	Parent=Os02t0831600-01
Chr02	irgsp1_rep	five_prime_UTR	35768103	35768125	.	-	.	Parent=Os02t0831600-01
Chr02	irgsp1_rep	CDS	35767575	35768102	.	-	0	Parent=Os02t0831600-01
Chr02	irgsp1_rep	CDS	35767281	35767489	.	-	0	Parent=Os02t0831600-01
Chr02	irgsp1_rep	CDS	35767035	35767184	.	-	1	Parent=Os02t0831600-01
Chr02	irgsp1_rep	CDS	35766809	35766942	.	-	1	Parent=Os02t0831600-01
Chr02	irgsp1_rep	CDS	35766403	35766512	.	-	2	Parent=Os02t0831600-01
Chr02	irgsp1_rep	CDS	35765471	35765577	.	-	0	Parent=Os02t0831600-01
Chr02	irgsp1_rep	CDS	35765226	35765355	.	-	1	Parent=Os02t0831600-01
Chr02	irgsp1_rep	CDS	35764953	35765069	.	-	0	Parent=Os02t0831600-01
Chr02	irgsp1_rep	CDS	35764748	35764855	.	-	0	Parent=Os02t0831600-01
Chr02	irgsp1_rep	CDS	35764495	35764566	.	-	0	Parent=Os02t0831600-01
Chr02	irgsp1_rep	CDS	35764036	35764159	.	-	0	Parent=Os02t0831600-01
Chr02	irgsp1_rep	CDS	35763717	35763881	.	-	2	Parent=Os02t0831600-01
Chr02	irgsp1_rep	CDS	35763480	35763601	.	-	2	Parent=Os02t0831600-01
Chr02	irgsp1_rep	CDS	35763259	35763396	.	-	0	Parent=Os02t0831600-01
Chr02	irgsp1_rep	CDS	35763021	35763163	.	-	0	Parent=Os02t0831600-01
Chr02	irgsp1_rep	CDS	35762840	35762902	.	-	1	Parent=Os02t0831600-01
Chr02	irgsp1_rep	CDS	35762579	35762642	.	-	1	Parent=Os02t0831600-01
Chr02	irgsp1_rep	CDS	35762358	35762493	.	-	0	Parent=Os02t0831600-01
Chr02	irgsp1_rep	CDS	35762177	35762250	.	-	2	Parent=Os02t0831600-01
Chr02	irgsp1_rep	CDS	35761997	35762091	.	-	0	Parent=Os02t0831600-01
Chr02	irgsp1_rep	CDS	35761884	35761915	.	-	1	Parent=Os02t0831600-01
Chr02	irgsp1_rep	CDS	35761583	35761797	.	-	2	Parent=Os02t0831600-01
Chr02	irgsp1_rep	three_prime_UTR	35761332	35761582	.	-	.	Parent=Os02t0831600-01
Chr02	irgsp1_rep	mRNA	35761581	35763099	.	+	.	ID=Os02t0831650-00;Name=Os02t0831650-00;Locus_id=Os02g0831650;Note=Non-protein coding transcript.;Transcript_evidence=BT016774 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0831650-00
Chr02	irgsp1_rep	exon	35761581	35761791	.	+	.	Parent=Os02t0831650-00
Chr02	irgsp1_rep	exon	35761962	35762105	.	+	.	Parent=Os02t0831650-00
Chr02	irgsp1_rep	exon	35762188	35762246	.	+	.	Parent=Os02t0831650-00
Chr02	irgsp1_rep	exon	35762352	35762473	.	+	.	Parent=Os02t0831650-00
Chr02	irgsp1_rep	exon	35762561	35762671	.	+	.	Parent=Os02t0831650-00
Chr02	irgsp1_rep	exon	35762980	35763099	.	+	.	Parent=Os02t0831650-00
Chr02	irgsp1_rep	mRNA	35770614	35772124	.	-	.	ID=Os02t0831700-01;Name=Os02t0831700-01;Locus_id=Os02g0831700;RAP-DB Gene Symbol Synonym(s)=PLA2-I;RAP-DB Gene Name Synonym(s)=phospholipase A2-I;Oryzabase Gene Symbol Synonym(s)=PLA2-I;Oryzabase Gene Name Synonym(s)=phospholipase A2-I;Note=Low-molecular-weight calcium-dependent phospholipase A2;Transcript_evidence=AK108410;ORF_evidence=Q9XG80;GO=Biological Process: phospholipid metabolic process (GO:0006644),Biological Process: arachidonic acid secretion (GO:0050482),Molecular Function: phospholipase A2 activity (GO:0004623);InterPro=Phospholipase A2 domain superfamily (IPR036444),Phospholipase A2%2C histidine active site (IPR033113);NIAS_FLcDNA=002-142-H01;Manual Curation=July 10%2C 2020;Literature_PMID=10608658,10673040;Oryzabase=14489;Expression=AK108410;TENOR=Os02t0831700-01;KEGG=Os02t0831700-01 (EC:3.1.1.4)
Chr02	irgsp1_rep	five_prime_UTR	35772084	35772124	.	-	.	Parent=Os02t0831700-01
Chr02	irgsp1_rep	CDS	35771966	35772083	.	-	0	Parent=Os02t0831700-01
Chr02	irgsp1_rep	CDS	35771772	35771891	.	-	2	Parent=Os02t0831700-01
Chr02	irgsp1_rep	CDS	35771130	35771308	.	-	2	Parent=Os02t0831700-01
Chr02	irgsp1_rep	three_prime_UTR	35770614	35771129	.	-	.	Parent=Os02t0831700-01
Chr02	irgsp1_rep	mRNA	35772198	35774768	.	+	.	ID=Os02t0831800-01;Name=Os02t0831800-01;Locus_id=Os02g0831800;Note=Similar to 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2.;Transcript_evidence=AK060519 (DDBJ%2C Best hit);ORF_evidence=B6UB59 (UniProt);GO=Biological Process: threonine metabolic process (GO:0006566),Biological Process: phosphorylation (GO:0016310),Molecular Function: homoserine kinase activity (GO:0004413),Molecular Function: ATP binding (GO:0005524),Molecular Function: kinase activity (GO:0016301);InterPro=Homoserine kinase (IPR000870),GHMP kinase%2C ATP-binding%2C conserved site (IPR006203),GHMP kinase (IPR006204),GHMP kinase%2C C-terminal (IPR013750),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=001-020-B10;Expression=AK060519;TENOR=Os02t0831800-01;KEGG=Os02t0831800-01 (EC:2.7.1.39)
Chr02	irgsp1_rep	five_prime_UTR	35772198	35772232	.	+	.	Parent=Os02t0831800-01
Chr02	irgsp1_rep	CDS	35772233	35773369	.	+	0	Parent=Os02t0831800-01
Chr02	irgsp1_rep	three_prime_UTR	35773370	35773373	.	+	.	Parent=Os02t0831800-01
Chr02	irgsp1_rep	three_prime_UTR	35774472	35774768	.	+	.	Parent=Os02t0831800-01
Chr02	irgsp1_rep	mRNA	35774757	35776478	.	-	.	ID=Os02t0831900-01;Name=Os02t0831900-01;Locus_id=Os02g0831900;Note=Similar to Calcium dependent protein kinase.;Transcript_evidence=AK109754 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-146-F12;Expression=AK109754;TENOR=Os02t0831900-01;KEGG=Os02t0831900-01
Chr02	irgsp1_rep	five_prime_UTR	35776423	35776478	.	-	.	Parent=Os02t0831900-01
Chr02	irgsp1_rep	CDS	35775955	35776422	.	-	0	Parent=Os02t0831900-01
Chr02	irgsp1_rep	three_prime_UTR	35774757	35775954	.	-	.	Parent=Os02t0831900-01
Chr02	irgsp1_rep	mRNA	35775030	35777287	.	+	.	ID=Os02t0832000-01;Name=Os02t0832000-01;Locus_id=Os02g0832000;CGSNL Gene Symbol=CDPK6;CGSNL Gene Name=CALCIUM-DEPENDENT PROTEIN KINASE 6;Oryzabase Gene Symbol Synonym(s)=OsCDPK6%2C OsCPK6;Oryzabase Gene Name Synonym(s)=calcium-dependent protein kinase;Note=Similar to Calmodulin-like-domain protein kinase CPK2.;Transcript_evidence=AK069127 (DDBJ%2C Best hit);ORF_evidence=NP_001170479.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Calcium-binding EF-hand (IPR002048),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),EF-hand-like domain (IPR011992),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J023007M23;Oryzabase=8060;Expression=AK069127;TENOR=Os02t0832000-01;KEGG=Os02t0832000-01 (EC:2.7.11.17)
Chr02	irgsp1_rep	five_prime_UTR	35775030	35775163	.	+	.	Parent=Os02t0832000-01
Chr02	irgsp1_rep	CDS	35775164	35776429	.	+	0	Parent=Os02t0832000-01
Chr02	irgsp1_rep	CDS	35776516	35776740	.	+	0	Parent=Os02t0832000-01
Chr02	irgsp1_rep	CDS	35776821	35776967	.	+	0	Parent=Os02t0832000-01
Chr02	irgsp1_rep	three_prime_UTR	35776968	35777287	.	+	.	Parent=Os02t0832000-01
Chr02	irgsp1_rep	mRNA	35779282	35780860	.	+	.	ID=Os02t0832100-00;Name=Os02t0832100-00;Locus_id=Os02g0832100;Note=Similar to hexose transporter.;Transcript_evidence=CT835402 (DDBJ%2C Best hit);ORF_evidence=NP_001147067.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857);InterPro=General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);TENOR=Os02t0832100-00;KEGG=Os02t0832100-00
Chr02	irgsp1_rep	five_prime_UTR	35779282	35779429	.	+	.	Parent=Os02t0832100-00
Chr02	irgsp1_rep	CDS	35779430	35779435	.	+	0	Parent=Os02t0832100-00
Chr02	irgsp1_rep	CDS	35779508	35780162	.	+	0	Parent=Os02t0832100-00
Chr02	irgsp1_rep	CDS	35780190	35780860	.	+	2	Parent=Os02t0832100-00
Chr02	irgsp1_rep	mRNA	35783494	35784085	.	-	.	ID=Os02t0832150-00;Name=Os02t0832150-00;Locus_id=Os02g0832150;Note=Similar to zinc finger (C3HC4-type RING finger) family protein.;Transcript_evidence=FP098698 (DDBJ);ORF_evidence=NP_173506.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os02t0832150-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	35784049	35784085	.	-	.	Parent=Os02t0832150-00
Chr02	irgsp1_rep	CDS	35783494	35784048	.	-	0	Parent=Os02t0832150-00
Chr02	irgsp1_rep	mRNA	35784843	35787721	.	-	.	ID=Os02t0832200-01;Name=Os02t0832200-01;Locus_id=Os02g0832200;Note=Similar to chloroplast channel forming outer membrane protein.;Transcript_evidence=AK108268 (DDBJ%2C Best hit);ORF_evidence=NP_001149682.1 (RefSeq);NIAS_FLcDNA=002-141-B12;Expression=AK108268;TENOR=Os02t0832200-01;KEGG=Os02t0832200-01
Chr02	irgsp1_rep	five_prime_UTR	35787713	35787721	.	-	.	Parent=Os02t0832200-01
Chr02	irgsp1_rep	CDS	35787596	35787712	.	-	0	Parent=Os02t0832200-01
Chr02	irgsp1_rep	CDS	35787235	35787492	.	-	0	Parent=Os02t0832200-01
Chr02	irgsp1_rep	CDS	35787049	35787147	.	-	0	Parent=Os02t0832200-01
Chr02	irgsp1_rep	CDS	35786124	35786207	.	-	0	Parent=Os02t0832200-01
Chr02	irgsp1_rep	three_prime_UTR	35786104	35786123	.	-	.	Parent=Os02t0832200-01
Chr02	irgsp1_rep	three_prime_UTR	35784843	35785083	.	-	.	Parent=Os02t0832200-01
Chr02	irgsp1_rep	mRNA	35790047	35790768	.	-	.	ID=Os02t0832301-01;Name=Os02t0832301-01;Locus_id=Os02g0832301;Note=Hypothetical gene.;Transcript_evidence=AK121067 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023061B11;Expression=AK121067;TENOR=Os02t0832301-01;KEGG=Os02t0832301-01
Chr02	irgsp1_rep	five_prime_UTR	35790767	35790768	.	-	.	Parent=Os02t0832301-01
Chr02	irgsp1_rep	CDS	35790458	35790766	.	-	0	Parent=Os02t0832301-01
Chr02	irgsp1_rep	three_prime_UTR	35790047	35790457	.	-	.	Parent=Os02t0832301-01
Chr02	irgsp1_rep	mRNA	35790162	35796638	.	+	.	ID=Os02t0832400-01;Name=Os02t0832400-01;Locus_id=Os02g0832400;CGSNL Gene Symbol=GSL7;CGSNL Gene Name=BETA-1%2C3-GLUCANASE ACTIVITY 7;Oryzabase Gene Symbol Synonym(s)=OsGSL7;Oryzabase Gene Name Synonym(s)=Oryza sativa callose synthase 7%2C callose synthase 7;Note=Similar to Callose synthase 1 catalytic subunit.;Transcript_evidence=AK120919 (DDBJ%2C Best hit);ORF_evidence=Q9LXT9 (UniProt);InterPro=Protein of unknown function DUF605 (IPR006745),Vacuolar protein sorting-associate Vta1%2C N-terminal (IPR023175);NIAS_FLcDNA=J023035A16;Oryzabase=8542;TENOR=Os02t0832400-01
Chr02	irgsp1_rep	five_prime_UTR	35790162	35790346	.	+	.	Parent=Os02t0832400-01
Chr02	irgsp1_rep	CDS	35790347	35790822	.	+	0	Parent=Os02t0832400-01
Chr02	irgsp1_rep	CDS	35790942	35791035	.	+	1	Parent=Os02t0832400-01
Chr02	irgsp1_rep	CDS	35791118	35791228	.	+	0	Parent=Os02t0832400-01
Chr02	irgsp1_rep	CDS	35791316	35791432	.	+	0	Parent=Os02t0832400-01
Chr02	irgsp1_rep	CDS	35791532	35791624	.	+	0	Parent=Os02t0832400-01
Chr02	irgsp1_rep	CDS	35791724	35791815	.	+	0	Parent=Os02t0832400-01
Chr02	irgsp1_rep	CDS	35791905	35792031	.	+	1	Parent=Os02t0832400-01
Chr02	irgsp1_rep	CDS	35792509	35792646	.	+	0	Parent=Os02t0832400-01
Chr02	irgsp1_rep	CDS	35792724	35792827	.	+	0	Parent=Os02t0832400-01
Chr02	irgsp1_rep	CDS	35792944	35793037	.	+	1	Parent=Os02t0832400-01
Chr02	irgsp1_rep	CDS	35793246	35793368	.	+	0	Parent=Os02t0832400-01
Chr02	irgsp1_rep	CDS	35793465	35793579	.	+	0	Parent=Os02t0832400-01
Chr02	irgsp1_rep	CDS	35794600	35794934	.	+	2	Parent=Os02t0832400-01
Chr02	irgsp1_rep	CDS	35795020	35795072	.	+	0	Parent=Os02t0832400-01
Chr02	irgsp1_rep	CDS	35795151	35795211	.	+	1	Parent=Os02t0832400-01
Chr02	irgsp1_rep	CDS	35795943	35796024	.	+	0	Parent=Os02t0832400-01
Chr02	irgsp1_rep	CDS	35796101	35796150	.	+	2	Parent=Os02t0832400-01
Chr02	irgsp1_rep	CDS	35796235	35796321	.	+	0	Parent=Os02t0832400-01
Chr02	irgsp1_rep	CDS	35796544	35796638	.	+	0	Parent=Os02t0832400-01
Chr02	irgsp1_rep	mRNA	35790210	35797308	.	+	.	ID=Os02t0832400-02;Name=Os02t0832400-02;Locus_id=Os02g0832400;CGSNL Gene Symbol=GSL7;CGSNL Gene Name=BETA-1%2C3-GLUCANASE ACTIVITY 7;Oryzabase Gene Symbol Synonym(s)=OsGSL7;Oryzabase Gene Name Synonym(s)=Oryza sativa callose synthase 7%2C callose synthase 7;Note=Similar to Callose synthase 1 catalytic subunit.;Transcript_evidence=AK287502 (DDBJ%2C Best hit);ORF_evidence=Q9LXT9 (UniProt);InterPro=Protein of unknown function DUF605 (IPR006745),Vacuolar protein sorting-associate Vta1%2C N-terminal (IPR023175);NIAS_FLcDNA=J043034I09;Oryzabase=8542;TENOR=Os02t0832400-02;KEGG=Os02t0832400-02 (EC:2.4.1.-)
Chr02	irgsp1_rep	five_prime_UTR	35790210	35790346	.	+	.	Parent=Os02t0832400-02
Chr02	irgsp1_rep	CDS	35790347	35790822	.	+	0	Parent=Os02t0832400-02
Chr02	irgsp1_rep	CDS	35790942	35791035	.	+	1	Parent=Os02t0832400-02
Chr02	irgsp1_rep	CDS	35791118	35791228	.	+	0	Parent=Os02t0832400-02
Chr02	irgsp1_rep	CDS	35791316	35791432	.	+	0	Parent=Os02t0832400-02
Chr02	irgsp1_rep	CDS	35791532	35791624	.	+	0	Parent=Os02t0832400-02
Chr02	irgsp1_rep	CDS	35791724	35791815	.	+	0	Parent=Os02t0832400-02
Chr02	irgsp1_rep	CDS	35791905	35792031	.	+	1	Parent=Os02t0832400-02
Chr02	irgsp1_rep	CDS	35792509	35792646	.	+	0	Parent=Os02t0832400-02
Chr02	irgsp1_rep	CDS	35792724	35792827	.	+	0	Parent=Os02t0832400-02
Chr02	irgsp1_rep	CDS	35792944	35793037	.	+	1	Parent=Os02t0832400-02
Chr02	irgsp1_rep	CDS	35793246	35793368	.	+	0	Parent=Os02t0832400-02
Chr02	irgsp1_rep	CDS	35793465	35793579	.	+	0	Parent=Os02t0832400-02
Chr02	irgsp1_rep	CDS	35794600	35794934	.	+	2	Parent=Os02t0832400-02
Chr02	irgsp1_rep	CDS	35795020	35795072	.	+	0	Parent=Os02t0832400-02
Chr02	irgsp1_rep	CDS	35795151	35795211	.	+	1	Parent=Os02t0832400-02
Chr02	irgsp1_rep	CDS	35795943	35796024	.	+	0	Parent=Os02t0832400-02
Chr02	irgsp1_rep	CDS	35796101	35796150	.	+	2	Parent=Os02t0832400-02
Chr02	irgsp1_rep	CDS	35796235	35796321	.	+	0	Parent=Os02t0832400-02
Chr02	irgsp1_rep	CDS	35796544	35796672	.	+	0	Parent=Os02t0832400-02
Chr02	irgsp1_rep	CDS	35796786	35796889	.	+	0	Parent=Os02t0832400-02
Chr02	irgsp1_rep	CDS	35796975	35797059	.	+	1	Parent=Os02t0832400-02
Chr02	irgsp1_rep	CDS	35797156	35797308	.	+	0	Parent=Os02t0832400-02
Chr02	irgsp1_rep	mRNA	35802733	35804494	.	+	.	ID=Os02t0832500-01;Name=Os02t0832500-01;Locus_id=Os02g0832500;CGSNL Gene Symbol=GSL7;CGSNL Gene Name=BETA-1%2C3-GLUCANASE ACTIVITY 7;Oryzabase Gene Symbol Synonym(s)=OsGSL7;Oryzabase Gene Name Synonym(s)=Oryza sativa callose synthase 7%2C callose synthase 7%2C beta-1%2C 3-glucanase;Note=Similar to predicted protein.;Transcript_evidence=AK105109 (DDBJ%2C Best hit);ORF_evidence=C6GFB2 (UniProt);GO=Biological Process: 1%2C3-beta-D-glucan biosynthetic process (GO:0006075),Cellular Component: 1%2C3-beta-D-glucan synthase complex (GO:0000148),Cellular Component: membrane (GO:0016020),Molecular Function: 1%2C3-beta-D-glucan synthase activity (GO:0003843);InterPro=Glycosyl transferase%2C family 48 (IPR003440);NIAS_FLcDNA=001-100-F07;Oryzabase=16697,8542;Expression=AK105109;TENOR=Os02t0832500-01;KEGG=Os02t0832500-01
Chr02	irgsp1_rep	five_prime_UTR	35802733	35802733	.	+	.	Parent=Os02t0832500-01
Chr02	irgsp1_rep	CDS	35802734	35803183	.	+	0	Parent=Os02t0832500-01
Chr02	irgsp1_rep	CDS	35803289	35803339	.	+	0	Parent=Os02t0832500-01
Chr02	irgsp1_rep	CDS	35803628	35803813	.	+	0	Parent=Os02t0832500-01
Chr02	irgsp1_rep	CDS	35803892	35804140	.	+	0	Parent=Os02t0832500-01
Chr02	irgsp1_rep	three_prime_UTR	35804141	35804494	.	+	.	Parent=Os02t0832500-01
Chr02	irgsp1_rep	mRNA	35804950	35806316	.	+	.	ID=Os02t0832600-01;Name=Os02t0832600-01;Locus_id=Os02g0832600;Note=Similar to PRLI-interacting factor A (Fragment).;Transcript_evidence=AK072277 (DDBJ%2C Best hit),AK100140 (DDBJ%2C Best hit);ORF_evidence=Q9FUB4 (UniProt);NIAS_FLcDNA=J023010P11,J023010P10;Expression=AK072277;TENOR=Os02t0832600-01;KEGG=Os02t0832600-01
Chr02	irgsp1_rep	five_prime_UTR	35804950	35805094	.	+	.	Parent=Os02t0832600-01
Chr02	irgsp1_rep	CDS	35805095	35806150	.	+	0	Parent=Os02t0832600-01
Chr02	irgsp1_rep	three_prime_UTR	35806151	35806316	.	+	.	Parent=Os02t0832600-01
Chr02	irgsp1_rep	mRNA	35805016	35806540	.	+	.	ID=Os02t0832600-02;Name=Os02t0832600-02;Locus_id=Os02g0832600;Note=Similar to PRLI-interacting factor A (Fragment).;Transcript_evidence=AK058645 (DDBJ%2C Best hit);ORF_evidence=Q9FUB4 (UniProt);NIAS_FLcDNA=001-018-E08;Expression=AK058645;TENOR=Os02t0832600-02;KEGG=Os02t0832600-02
Chr02	irgsp1_rep	five_prime_UTR	35805016	35805094	.	+	.	Parent=Os02t0832600-02
Chr02	irgsp1_rep	CDS	35805095	35806150	.	+	0	Parent=Os02t0832600-02
Chr02	irgsp1_rep	three_prime_UTR	35806151	35806540	.	+	.	Parent=Os02t0832600-02
Chr02	irgsp1_rep	mRNA	35807067	35812360	.	+	.	ID=Os02t0832700-01;Name=Os02t0832700-01;Locus_id=Os02g0832700;CGSNL Gene Symbol=MTP5;CGSNL Gene Name=METAL TOLERANCE PROTEIN 5;Oryzabase Gene Symbol Synonym(s)=OsMTP5;Oryzabase Gene Name Synonym(s)=metal tolerance protein 5;Note=Similar to Metal tolerance protein C2 (AtMTPc2).;Transcript_evidence=AK099439 (DDBJ%2C Best hit);ORF_evidence=E4MY95 (UniProt);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: cation transmembrane transporter activity (GO:0008324);InterPro=Cation efflux protein (IPR002524);NIAS_FLcDNA=J013020D21;Oryzabase=13408;Expression=AK099439;TENOR=Os02t0832700-01;KEGG=Os02t0832700-01
Chr02	irgsp1_rep	five_prime_UTR	35807067	35807341	.	+	.	Parent=Os02t0832700-01
Chr02	irgsp1_rep	five_prime_UTR	35807421	35807432	.	+	.	Parent=Os02t0832700-01
Chr02	irgsp1_rep	CDS	35807433	35807644	.	+	0	Parent=Os02t0832700-01
Chr02	irgsp1_rep	CDS	35810702	35810782	.	+	1	Parent=Os02t0832700-01
Chr02	irgsp1_rep	CDS	35810882	35810970	.	+	1	Parent=Os02t0832700-01
Chr02	irgsp1_rep	CDS	35811090	35811159	.	+	2	Parent=Os02t0832700-01
Chr02	irgsp1_rep	CDS	35811266	35811304	.	+	1	Parent=Os02t0832700-01
Chr02	irgsp1_rep	CDS	35811405	35811555	.	+	1	Parent=Os02t0832700-01
Chr02	irgsp1_rep	CDS	35811653	35811742	.	+	0	Parent=Os02t0832700-01
Chr02	irgsp1_rep	CDS	35812056	35812154	.	+	0	Parent=Os02t0832700-01
Chr02	irgsp1_rep	three_prime_UTR	35812155	35812360	.	+	.	Parent=Os02t0832700-01
Chr02	irgsp1_rep	mRNA	35807130	35812360	.	+	.	ID=Os02t0832700-02;Name=Os02t0832700-02;Locus_id=Os02g0832700;CGSNL Gene Symbol=MTP5;CGSNL Gene Name=METAL TOLERANCE PROTEIN 5;Oryzabase Gene Symbol Synonym(s)=OsMTP5;Oryzabase Gene Name Synonym(s)=metal tolerance protein 5;Note=Similar to Metal tolerance protein C2.;Transcript_evidence=AK099942 (DDBJ%2C Best hit);ORF_evidence=E4MY95 (UniProt);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: cation transmembrane transporter activity (GO:0008324);InterPro=Cation efflux protein (IPR002524);NIAS_FLcDNA=J013121N13;Oryzabase=13408;Expression=AK099942;TENOR=Os02t0832700-02;KEGG=Os02t0832700-02
Chr02	irgsp1_rep	five_prime_UTR	35807130	35807130	.	+	.	Parent=Os02t0832700-02
Chr02	irgsp1_rep	CDS	35807131	35807341	.	+	0	Parent=Os02t0832700-02
Chr02	irgsp1_rep	CDS	35807421	35807566	.	+	2	Parent=Os02t0832700-02
Chr02	irgsp1_rep	three_prime_UTR	35807567	35807644	.	+	.	Parent=Os02t0832700-02
Chr02	irgsp1_rep	three_prime_UTR	35810706	35810782	.	+	.	Parent=Os02t0832700-02
Chr02	irgsp1_rep	three_prime_UTR	35810882	35810970	.	+	.	Parent=Os02t0832700-02
Chr02	irgsp1_rep	three_prime_UTR	35811090	35811304	.	+	.	Parent=Os02t0832700-02
Chr02	irgsp1_rep	three_prime_UTR	35811405	35811555	.	+	.	Parent=Os02t0832700-02
Chr02	irgsp1_rep	three_prime_UTR	35811653	35811742	.	+	.	Parent=Os02t0832700-02
Chr02	irgsp1_rep	three_prime_UTR	35812056	35812360	.	+	.	Parent=Os02t0832700-02
Chr02	irgsp1_rep	mRNA	35812603	35818178	.	-	.	ID=Os02t0832800-01;Name=Os02t0832800-01;Locus_id=Os02g0832800;RAP-DB Gene Symbol Synonym(s)=GnTI;RAP-DB Gene Name Synonym(s)=N-acetylglucosaminyltransferase I;CGSNL Gene Symbol=GLCNACTI;CGSNL Gene Name=N-ACETYLGLUCOSAMINYLTRANSFERASE I;Oryzabase Gene Symbol Synonym(s)=GlcNAc-TI%2C OsGlcNAc-TI%2C GnTI%2C OsGnTI;Oryzabase Gene Name Synonym(s)=N-acetylglucosaminyltransferase I;Note=N-acetylglucosaminyltransferase I%2C Cytokinin signaling%2C Cellulose biosynthesis;Transcript_evidence=AK101526;ORF_evidence=Q8RW24,Q6K959;GO=Biological Process: protein glycosylation (GO:0006486),Molecular Function: acetylglucosaminyltransferase activity (GO:0008375);InterPro=Nucleotide-diphospho-sugar transferases (IPR029044),Glycosyl transferase%2C family 13 (IPR004139);NIAS_FLcDNA=J033046P17;Manual Curation=August 4%2C 2020;Literature_PMID=23199012;Oryzabase=14656;Expression=AK101526;TENOR=Os02t0832800-01;KEGG=Os02t0832800-01 (EC:2.4.1.101)
Chr02	irgsp1_rep	five_prime_UTR	35817777	35818178	.	-	.	Parent=Os02t0832800-01
Chr02	irgsp1_rep	CDS	35817708	35817776	.	-	0	Parent=Os02t0832800-01
Chr02	irgsp1_rep	CDS	35817534	35817584	.	-	0	Parent=Os02t0832800-01
Chr02	irgsp1_rep	CDS	35817139	35817226	.	-	0	Parent=Os02t0832800-01
Chr02	irgsp1_rep	CDS	35816987	35817049	.	-	2	Parent=Os02t0832800-01
Chr02	irgsp1_rep	CDS	35816197	35816231	.	-	2	Parent=Os02t0832800-01
Chr02	irgsp1_rep	CDS	35816049	35816125	.	-	0	Parent=Os02t0832800-01
Chr02	irgsp1_rep	CDS	35815673	35815718	.	-	1	Parent=Os02t0832800-01
Chr02	irgsp1_rep	CDS	35815528	35815590	.	-	0	Parent=Os02t0832800-01
Chr02	irgsp1_rep	CDS	35814528	35814594	.	-	0	Parent=Os02t0832800-01
Chr02	irgsp1_rep	CDS	35814373	35814441	.	-	2	Parent=Os02t0832800-01
Chr02	irgsp1_rep	CDS	35814216	35814285	.	-	2	Parent=Os02t0832800-01
Chr02	irgsp1_rep	CDS	35814052	35814113	.	-	1	Parent=Os02t0832800-01
Chr02	irgsp1_rep	CDS	35813876	35813966	.	-	2	Parent=Os02t0832800-01
Chr02	irgsp1_rep	CDS	35813695	35813788	.	-	1	Parent=Os02t0832800-01
Chr02	irgsp1_rep	CDS	35813494	35813556	.	-	0	Parent=Os02t0832800-01
Chr02	irgsp1_rep	CDS	35813357	35813395	.	-	0	Parent=Os02t0832800-01
Chr02	irgsp1_rep	CDS	35813116	35813286	.	-	0	Parent=Os02t0832800-01
Chr02	irgsp1_rep	CDS	35812768	35812878	.	-	0	Parent=Os02t0832800-01
Chr02	irgsp1_rep	three_prime_UTR	35812603	35812767	.	-	.	Parent=Os02t0832800-01
Chr02	irgsp1_rep	mRNA	35812639	35814438	.	-	.	ID=Os02t0832800-02;Name=Os02t0832800-02;Locus_id=Os02g0832800;CGSNL Gene Symbol=GLCNACTI;CGSNL Gene Name=N-ACETYLGLUCOSAMINYLTRANSFERASE I;Oryzabase Gene Symbol Synonym(s)=GlcNAc-TI%2C OsGlcNAc-TI%2C GnTI%2C OsGnTI;Oryzabase Gene Name Synonym(s)=N-acetylglucosaminyltransferase I;Note=Similar to N-acetylglucosaminyltransferase 1.;Transcript_evidence=AK058826 (DDBJ%2C Best hit);ORF_evidence=Q8RW24 (UniProt);GO=Biological Process: protein N-linked glycosylation (GO:0006487),Cellular Component: Golgi membrane (GO:0000139),Molecular Function: alpha-1%2C3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity (GO:0003827);InterPro=Glycosyl transferase%2C family 13 (IPR004139);NIAS_FLcDNA=001-003-H05;Oryzabase=14656;Expression=AK058826;TENOR=Os02t0832800-02;KEGG=Os02t0832800-02 (EC:2.4.1.101)
Chr02	irgsp1_rep	five_prime_UTR	35814437	35814438	.	-	.	Parent=Os02t0832800-02
Chr02	irgsp1_rep	CDS	35814373	35814436	.	-	0	Parent=Os02t0832800-02
Chr02	irgsp1_rep	CDS	35814216	35814285	.	-	2	Parent=Os02t0832800-02
Chr02	irgsp1_rep	CDS	35814052	35814113	.	-	1	Parent=Os02t0832800-02
Chr02	irgsp1_rep	CDS	35813876	35813966	.	-	2	Parent=Os02t0832800-02
Chr02	irgsp1_rep	CDS	35813695	35813788	.	-	1	Parent=Os02t0832800-02
Chr02	irgsp1_rep	CDS	35813494	35813556	.	-	0	Parent=Os02t0832800-02
Chr02	irgsp1_rep	CDS	35813357	35813395	.	-	0	Parent=Os02t0832800-02
Chr02	irgsp1_rep	CDS	35813116	35813286	.	-	0	Parent=Os02t0832800-02
Chr02	irgsp1_rep	CDS	35812768	35812878	.	-	0	Parent=Os02t0832800-02
Chr02	irgsp1_rep	three_prime_UTR	35812639	35812767	.	-	.	Parent=Os02t0832800-02
Chr02	irgsp1_rep	mRNA	35812768	35813226	.	+	.	ID=Os02t0832833-00;Name=Os02t0832833-00;Locus_id=Os02g0832833;Note=Non-protein coding transcript.;Transcript_evidence=AK330545 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0832833-00
Chr02	irgsp1_rep	exon	35812768	35812861	.	+	.	Parent=Os02t0832833-00
Chr02	irgsp1_rep	exon	35813108	35813226	.	+	.	Parent=Os02t0832833-00
Chr02	irgsp1_rep	mRNA	35819539	35820309	.	+	.	ID=Os02t0832900-00;Name=Os02t0832900-00;Locus_id=Os02g0832900;Note=Similar to RNA binding protein.;Transcript_evidence=EU947363 (DDBJ);ORF_evidence=NP_001148833.1 (RefSeq);TENOR=Os02t0832900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	35819539	35819629	.	+	.	Parent=Os02t0832900-00
Chr02	irgsp1_rep	CDS	35819630	35819720	.	+	0	Parent=Os02t0832900-00
Chr02	irgsp1_rep	CDS	35819962	35820290	.	+	2	Parent=Os02t0832900-00
Chr02	irgsp1_rep	three_prime_UTR	35820291	35820309	.	+	.	Parent=Os02t0832900-00
Chr02	irgsp1_rep	mRNA	35821686	35822971	.	+	.	ID=Os02t0833000-01;Name=Os02t0833000-01;Locus_id=Os02g0833000;CGSNL Gene Symbol=RLCK92;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 92;Oryzabase Gene Symbol Synonym(s)=OsRLCK92;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 92;Note=Similar to Serine/threonine-protein kinase PBS1 (EC 2.7.1.37) (AvrPphB susceptible protein 1).;Transcript_evidence=AK107147 (DDBJ%2C Best hit);ORF_evidence=XP_002304664.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-124-D10;Oryzabase=18802;Expression=AK107147;TENOR=Os02t0833000-01;KEGG=Os02t0833000-01 (EC:2.7.1.37)
Chr02	irgsp1_rep	five_prime_UTR	35821686	35821691	.	+	.	Parent=Os02t0833000-01
Chr02	irgsp1_rep	CDS	35821692	35822798	.	+	0	Parent=Os02t0833000-01
Chr02	irgsp1_rep	three_prime_UTR	35822799	35822971	.	+	.	Parent=Os02t0833000-01
Chr02	irgsp1_rep	mRNA	35823201	35825384	.	+	.	ID=Os02t0833050-00;Name=Os02t0833050-00;Locus_id=Os02g0833050;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK376054 (DDBJ);ORF_evidence=Q6K957 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);TENOR=Os02t0833050-00
Chr02	irgsp1_rep	CDS	35823201	35825384	.	+	0	Parent=Os02t0833050-00
Chr02	irgsp1_rep	mRNA	35825448	35831318	.	+	.	ID=Os02t0833100-01;Name=Os02t0833100-01;Locus_id=Os02g0833100;Oryzabase Gene Symbol Synonym(s)=OsFRDL3;Oryzabase Gene Name Synonym(s)=FRD3-like protein 3;Note=Similar to antiporter/ drug transporter.;Transcript_evidence=AK066423 (DDBJ%2C Best hit);ORF_evidence=NP_195551.5 (RefSeq);NIAS_FLcDNA=J013061P19;Oryzabase=11141;TENOR=Os02t0833100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	35825448	35825615	.	+	.	Parent=Os02t0833100-01
Chr02	irgsp1_rep	CDS	35825616	35825863	.	+	0	Parent=Os02t0833100-01
Chr02	irgsp1_rep	CDS	35826013	35826131	.	+	1	Parent=Os02t0833100-01
Chr02	irgsp1_rep	CDS	35826315	35826367	.	+	2	Parent=Os02t0833100-01
Chr02	irgsp1_rep	three_prime_UTR	35826368	35826582	.	+	.	Parent=Os02t0833100-01
Chr02	irgsp1_rep	three_prime_UTR	35826696	35826817	.	+	.	Parent=Os02t0833100-01
Chr02	irgsp1_rep	three_prime_UTR	35826981	35827116	.	+	.	Parent=Os02t0833100-01
Chr02	irgsp1_rep	three_prime_UTR	35827368	35827464	.	+	.	Parent=Os02t0833100-01
Chr02	irgsp1_rep	three_prime_UTR	35827847	35828769	.	+	.	Parent=Os02t0833100-01
Chr02	irgsp1_rep	three_prime_UTR	35828973	35829268	.	+	.	Parent=Os02t0833100-01
Chr02	irgsp1_rep	three_prime_UTR	35829340	35829435	.	+	.	Parent=Os02t0833100-01
Chr02	irgsp1_rep	three_prime_UTR	35829506	35829627	.	+	.	Parent=Os02t0833100-01
Chr02	irgsp1_rep	three_prime_UTR	35830393	35830447	.	+	.	Parent=Os02t0833100-01
Chr02	irgsp1_rep	three_prime_UTR	35830971	35831318	.	+	.	Parent=Os02t0833100-01
Chr02	irgsp1_rep	mRNA	35832090	35836364	.	-	.	ID=Os02t0833200-01;Name=Os02t0833200-01;Locus_id=Os02g0833200;Note=Hypothetical conserved gene.;Transcript_evidence=AK119339 (DDBJ%2C Best hit);ORF_evidence=B8AFJ3 (UniProt);NIAS_FLcDNA=001-131-D05;Expression=AK119339;TENOR=Os02t0833200-01;KEGG=Os02t0833200-01
Chr02	irgsp1_rep	five_prime_UTR	35835446	35836364	.	-	.	Parent=Os02t0833200-01
Chr02	irgsp1_rep	CDS	35835212	35835445	.	-	0	Parent=Os02t0833200-01
Chr02	irgsp1_rep	three_prime_UTR	35834733	35835211	.	-	.	Parent=Os02t0833200-01
Chr02	irgsp1_rep	three_prime_UTR	35834506	35834620	.	-	.	Parent=Os02t0833200-01
Chr02	irgsp1_rep	three_prime_UTR	35833129	35833243	.	-	.	Parent=Os02t0833200-01
Chr02	irgsp1_rep	three_prime_UTR	35832470	35832937	.	-	.	Parent=Os02t0833200-01
Chr02	irgsp1_rep	three_prime_UTR	35832090	35832381	.	-	.	Parent=Os02t0833200-01
Chr02	irgsp1_rep	mRNA	35836805	35838365	.	-	.	ID=Os02t0833300-01;Name=Os02t0833300-01;Locus_id=Os02g0833300;Note=Ubiquitin-conjugating enzyme/RWD-like domain containing protein.;Transcript_evidence=AK069209 (DDBJ%2C Best hit),AK102994 (DDBJ%2C Best hit);ORF_evidence=B8AFJ3 (UniProt);GO=Biological Process: protein modification process (GO:0006464),Biological Process: protein transport (GO:0015031);InterPro=Ubiquitin E2 variant%2C N-terminal (IPR008883),Ubiquitin-conjugating enzyme/RWD-like (IPR016135),Steadiness box (IPR017916);NIAS_FLcDNA=J023009E01,J033116E04;TENOR=Os02t0833300-01
Chr02	irgsp1_rep	five_prime_UTR	35838259	35838365	.	-	.	Parent=Os02t0833300-01
Chr02	irgsp1_rep	CDS	35837050	35838258	.	-	0	Parent=Os02t0833300-01
Chr02	irgsp1_rep	three_prime_UTR	35836805	35837049	.	-	.	Parent=Os02t0833300-01
Chr02	irgsp1_rep	mRNA	35840220	35845140	.	-	.	ID=Os02t0833400-01;Name=Os02t0833400-01;Locus_id=Os02g0833400;Note=Conserved hypothetical protein.;Transcript_evidence=AK073112 (DDBJ%2C Best hit);ORF_evidence=B8AFJ4 (UniProt);NIAS_FLcDNA=J033024H02;Expression=AK073112;TENOR=Os02t0833400-01;KEGG=Os02t0833400-01
Chr02	irgsp1_rep	five_prime_UTR	35845031	35845140	.	-	.	Parent=Os02t0833400-01
Chr02	irgsp1_rep	CDS	35844797	35845030	.	-	0	Parent=Os02t0833400-01
Chr02	irgsp1_rep	CDS	35843144	35843233	.	-	0	Parent=Os02t0833400-01
Chr02	irgsp1_rep	CDS	35842772	35842852	.	-	0	Parent=Os02t0833400-01
Chr02	irgsp1_rep	CDS	35842497	35842628	.	-	0	Parent=Os02t0833400-01
Chr02	irgsp1_rep	CDS	35841147	35841365	.	-	0	Parent=Os02t0833400-01
Chr02	irgsp1_rep	CDS	35840909	35841001	.	-	0	Parent=Os02t0833400-01
Chr02	irgsp1_rep	CDS	35840526	35840687	.	-	0	Parent=Os02t0833400-01
Chr02	irgsp1_rep	three_prime_UTR	35840220	35840525	.	-	.	Parent=Os02t0833400-01
Chr02	irgsp1_rep	mRNA	35842510	35845041	.	-	.	ID=Os02t0833400-02;Name=Os02t0833400-02;Locus_id=Os02g0833400;Note=Hypothetical conserved gene.;Transcript_evidence=AK063696 (DDBJ%2C Best hit);ORF_evidence=B8AFJ4 (UniProt);NIAS_FLcDNA=001-119-G02;TENOR=Os02t0833400-02
Chr02	irgsp1_rep	five_prime_UTR	35845031	35845041	.	-	.	Parent=Os02t0833400-02
Chr02	irgsp1_rep	CDS	35844797	35845030	.	-	0	Parent=Os02t0833400-02
Chr02	irgsp1_rep	CDS	35843144	35843233	.	-	0	Parent=Os02t0833400-02
Chr02	irgsp1_rep	CDS	35842772	35842852	.	-	0	Parent=Os02t0833400-02
Chr02	irgsp1_rep	CDS	35842510	35842628	.	-	0	Parent=Os02t0833400-02
Chr02	irgsp1_rep	mRNA	35840156	35841003	.	-	.	ID=Os02t0833400-03;Name=Os02t0833400-03;Locus_id=Os02g0833400;Note=Similar to predicted protein.;Transcript_evidence=AK105388 (DDBJ%2C Best hit);ORF_evidence=B9F4Q3 (UniProt);NIAS_FLcDNA=001-121-H12;Expression=AK105388;TENOR=Os02t0833400-03;KEGG=Os02t0833400-03
Chr02	irgsp1_rep	five_prime_UTR	35841002	35841003	.	-	.	Parent=Os02t0833400-03
Chr02	irgsp1_rep	CDS	35840909	35841001	.	-	0	Parent=Os02t0833400-03
Chr02	irgsp1_rep	CDS	35840526	35840687	.	-	0	Parent=Os02t0833400-03
Chr02	irgsp1_rep	three_prime_UTR	35840156	35840525	.	-	.	Parent=Os02t0833400-03
Chr02	irgsp1_rep	mRNA	35847614	35850596	.	+	.	ID=Os02t0833500-01;Name=Os02t0833500-01;Locus_id=Os02g0833500;CGSNL Gene Symbol=CHX1;CGSNL Gene Name=CATION/H+ EXCHANGER  1;Oryzabase Gene Symbol Synonym(s)=OsSTA85%2C STA85%2C OsCHX01%2C CHX01%2C OsCHX1;Oryzabase Gene Name Synonym(s)=cation/H+ exchanger  1;Note=Cation/H+ exchanger domain containing protein.;Transcript_evidence=AK100741 (DDBJ%2C Best hit);ORF_evidence=A2XBD9 (UniProt);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: solute:hydrogen antiporter activity (GO:0015299);InterPro=Cation/H+ exchanger (IPR006153);NIAS_FLcDNA=J023118E17;Oryzabase=19383;Expression=AK100741;TENOR=Os02t0833500-01;KEGG=Os02t0833500-01
Chr02	irgsp1_rep	five_prime_UTR	35847614	35847636	.	+	.	Parent=Os02t0833500-01
Chr02	irgsp1_rep	CDS	35847637	35847804	.	+	0	Parent=Os02t0833500-01
Chr02	irgsp1_rep	CDS	35847945	35850269	.	+	0	Parent=Os02t0833500-01
Chr02	irgsp1_rep	three_prime_UTR	35850270	35850596	.	+	.	Parent=Os02t0833500-01
Chr02	irgsp1_rep	mRNA	35847616	35850475	.	+	.	ID=Os02t0833500-02;Name=Os02t0833500-02;Locus_id=Os02g0833500;CGSNL Gene Symbol=CHX1;CGSNL Gene Name=CATION/H+ EXCHANGER  1;Oryzabase Gene Symbol Synonym(s)=OsSTA85%2C STA85%2C OsCHX01%2C CHX01%2C OsCHX1;Oryzabase Gene Name Synonym(s)=cation/H+ exchanger  1;Note=Hypothetical conserved gene.;Transcript_evidence=AK100456 (DDBJ%2C Best hit);ORF_evidence=A2XBD9 (UniProt);NIAS_FLcDNA=J023091F20;Oryzabase=19383;Expression=AK100456;TENOR=Os02t0833500-02;KEGG=Os02t0833500-02
Chr02	irgsp1_rep	five_prime_UTR	35847616	35847636	.	+	.	Parent=Os02t0833500-02
Chr02	irgsp1_rep	CDS	35847637	35847804	.	+	0	Parent=Os02t0833500-02
Chr02	irgsp1_rep	CDS	35847940	35848647	.	+	0	Parent=Os02t0833500-02
Chr02	irgsp1_rep	three_prime_UTR	35848648	35850475	.	+	.	Parent=Os02t0833500-02
Chr02	irgsp1_rep	mRNA	35853518	35854691	.	-	.	ID=Os02t0833600-01;Name=Os02t0833600-01;Locus_id=Os02g0833600;CGSNL Gene Symbol=BZIP24;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 24;Oryzabase Gene Symbol Synonym(s)=OsbZIP24%2C OsFD3%2C FD3;Oryzabase Gene Name Synonym(s)=bZIP transcription factor 24%2C FD Transcription Factor 3;Note=Similar to Basic leucine zipper transcription factor (Fragment).;Transcript_evidence=AK061086 (DDBJ%2C Best hit);ORF_evidence=B6SUA9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=cAMP response element binding (CREB) protein (IPR001630),Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);NIAS_FLcDNA=006-206-G05;Oryzabase=10112;Expression=AK061086;TENOR=Os02t0833600-01;KEGG=Os02t0833600-01
Chr02	irgsp1_rep	five_prime_UTR	35854606	35854691	.	-	.	Parent=Os02t0833600-01
Chr02	irgsp1_rep	CDS	35854333	35854605	.	-	0	Parent=Os02t0833600-01
Chr02	irgsp1_rep	CDS	35854097	35854174	.	-	0	Parent=Os02t0833600-01
Chr02	irgsp1_rep	CDS	35853859	35853936	.	-	0	Parent=Os02t0833600-01
Chr02	irgsp1_rep	three_prime_UTR	35853518	35853858	.	-	.	Parent=Os02t0833600-01
Chr02	irgsp1_rep	mRNA	35875161	35876977	.	+	.	ID=Os02t0833900-01;Name=Os02t0833900-01;Locus_id=Os02g0833900;Oryzabase Gene Symbol Synonym(s)=prx32;Oryzabase Gene Name Synonym(s)=class III peroxidase 32;Note=Similar to Peroxidase 64 precursor (EC 1.11.1.7) (Atperox P64) (PRXR4) (ATP17a).;Transcript_evidence=AK106171 (DDBJ%2C Best hit);ORF_evidence=Q5U1R1 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793);NIAS_FLcDNA=001-208-C01;Oryzabase=14559;Expression=AK106171;TENOR=Os02t0833900-01;KEGG=Os02t0833900-01 (EC:1.11.1.7)
Chr02	irgsp1_rep	five_prime_UTR	35875161	35875316	.	+	.	Parent=Os02t0833900-01
Chr02	irgsp1_rep	five_prime_UTR	35875651	35875664	.	+	.	Parent=Os02t0833900-01
Chr02	irgsp1_rep	CDS	35875665	35875904	.	+	0	Parent=Os02t0833900-01
Chr02	irgsp1_rep	CDS	35875982	35876170	.	+	0	Parent=Os02t0833900-01
Chr02	irgsp1_rep	CDS	35876275	35876467	.	+	0	Parent=Os02t0833900-01
Chr02	irgsp1_rep	CDS	35876582	35876826	.	+	2	Parent=Os02t0833900-01
Chr02	irgsp1_rep	three_prime_UTR	35876827	35876977	.	+	.	Parent=Os02t0833900-01
Chr02	irgsp1_rep	mRNA	35875570	35876976	.	+	.	ID=Os02t0833900-02;Name=Os02t0833900-02;Locus_id=Os02g0833900;Oryzabase Gene Symbol Synonym(s)=prx32;Oryzabase Gene Name Synonym(s)=class III peroxidase 32;Note=Similar to Class III peroxidase 32.;Transcript_evidence=AK099584 (DDBJ%2C Best hit);ORF_evidence=Q5U1R1 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793);NIAS_FLcDNA=J013042D08;Oryzabase=14559;Expression=AK099584;TENOR=Os02t0833900-02;KEGG=Os02t0833900-02
Chr02	irgsp1_rep	five_prime_UTR	35875570	35875664	.	+	.	Parent=Os02t0833900-02
Chr02	irgsp1_rep	CDS	35875665	35875904	.	+	0	Parent=Os02t0833900-02
Chr02	irgsp1_rep	CDS	35875982	35876170	.	+	0	Parent=Os02t0833900-02
Chr02	irgsp1_rep	CDS	35876275	35876826	.	+	0	Parent=Os02t0833900-02
Chr02	irgsp1_rep	three_prime_UTR	35876827	35876976	.	+	.	Parent=Os02t0833900-02
Chr02	irgsp1_rep	mRNA	35875624	35876974	.	+	.	ID=Os02t0833900-03;Name=Os02t0833900-03;Locus_id=Os02g0833900;Oryzabase Gene Symbol Synonym(s)=prx32;Oryzabase Gene Name Synonym(s)=class III peroxidase 32;Note=Similar to Class III peroxidase 32.;Transcript_evidence=AK106092 (DDBJ%2C Best hit),AK060083 (DDBJ%2C Best hit);ORF_evidence=Q5U1R1 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793);NIAS_FLcDNA=001-207-B09,006-306-E12;Oryzabase=14559;TENOR=Os02t0833900-03
Chr02	irgsp1_rep	five_prime_UTR	35875624	35875664	.	+	.	Parent=Os02t0833900-03
Chr02	irgsp1_rep	CDS	35875665	35875904	.	+	0	Parent=Os02t0833900-03
Chr02	irgsp1_rep	CDS	35875982	35876170	.	+	0	Parent=Os02t0833900-03
Chr02	irgsp1_rep	CDS	35876275	35876826	.	+	0	Parent=Os02t0833900-03
Chr02	irgsp1_rep	three_prime_UTR	35876827	35876974	.	+	.	Parent=Os02t0833900-03
Chr02	irgsp1_rep	mRNA	35875403	35875680	.	-	.	ID=Os02t0833950-00;Name=Os02t0833950-00;Locus_id=Os02g0833950;Note=Non-protein coding transcript.;Transcript_evidence=CT828504 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os02t0833950-00
Chr02	irgsp1_rep	exon	35875403	35875680	.	-	.	Parent=Os02t0833950-00
Chr02	irgsp1_rep	mRNA	35875726	35876760	.	-	.	ID=Os02t0833975-00;Name=Os02t0833975-00;Locus_id=Os02g0833975;Note=Hypothetical protein.;Transcript_evidence=tplb0038a01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os02t0833975-00
Chr02	irgsp1_rep	CDS	35876353	35876760	.	-	0	Parent=Os02t0833975-00
Chr02	irgsp1_rep	three_prime_UTR	35876249	35876352	.	-	.	Parent=Os02t0833975-00
Chr02	irgsp1_rep	three_prime_UTR	35876009	35876143	.	-	.	Parent=Os02t0833975-00
Chr02	irgsp1_rep	three_prime_UTR	35875726	35875921	.	-	.	Parent=Os02t0833975-00
Chr02	irgsp1_rep	mRNA	35880861	35885485	.	+	.	ID=Os02t0834000-01;Name=Os02t0834000-01;Locus_id=Os02g0834000;CGSNL Gene Symbol=RAC5;CGSNL Gene Name=RAC/ROP-TYPE GTPASE 5;Oryzabase Gene Symbol Synonym(s)=Osrac5%2C OsRac5%2C RACD%2C OsRacD%2C OsRACD;Oryzabase Gene Name Synonym(s)=small GTP-binding protein 5%2C Rac-like GTP-binding protein 5%2C GTPase protein RacD;Note=Rac-like GTP-binding protein 5.;Transcript_evidence=AK067504 (DDBJ%2C Best hit);ORF_evidence=Q6EP31 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Cellular Component: membrane (GO:0016020),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C Ras type (IPR020849);NIAS_FLcDNA=J013108N17;Oryzabase=6291;Expression=AK067504;TENOR=Os02t0834000-01;KEGG=Os02t0834000-01
Chr02	irgsp1_rep	five_prime_UTR	35880861	35880986	.	+	.	Parent=Os02t0834000-01
Chr02	irgsp1_rep	CDS	35880987	35881085	.	+	0	Parent=Os02t0834000-01
Chr02	irgsp1_rep	CDS	35881754	35881841	.	+	0	Parent=Os02t0834000-01
Chr02	irgsp1_rep	CDS	35881945	35882052	.	+	2	Parent=Os02t0834000-01
Chr02	irgsp1_rep	CDS	35882157	35882222	.	+	2	Parent=Os02t0834000-01
Chr02	irgsp1_rep	CDS	35884417	35884481	.	+	2	Parent=Os02t0834000-01
Chr02	irgsp1_rep	CDS	35884568	35884633	.	+	0	Parent=Os02t0834000-01
Chr02	irgsp1_rep	CDS	35885151	35885252	.	+	0	Parent=Os02t0834000-01
Chr02	irgsp1_rep	three_prime_UTR	35885253	35885485	.	+	.	Parent=Os02t0834000-01
Chr02	irgsp1_rep	mRNA	35880895	35885672	.	+	.	ID=Os02t0834000-02;Name=Os02t0834000-02;Locus_id=Os02g0834000;CGSNL Gene Symbol=RAC5;CGSNL Gene Name=RAC/ROP-TYPE GTPASE 5;Oryzabase Gene Symbol Synonym(s)=Osrac5%2C OsRac5%2C RACD%2C OsRacD%2C OsRACD;Oryzabase Gene Name Synonym(s)=small GTP-binding protein 5%2C Rac-like GTP-binding protein 5%2C GTPase protein RacD;Note=Similar to Rop4 small GTP binding protein.;Transcript_evidence=AK067796 (DDBJ%2C Best hit);ORF_evidence=Q6EP31-2 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Cellular Component: membrane (GO:0016020),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C Ras type (IPR020849);NIAS_FLcDNA=J013116I24;Oryzabase=6291;Expression=AK067796;TENOR=Os02t0834000-02;KEGG=Os02t0834000-02
Chr02	irgsp1_rep	five_prime_UTR	35880895	35880986	.	+	.	Parent=Os02t0834000-02
Chr02	irgsp1_rep	CDS	35880987	35881085	.	+	0	Parent=Os02t0834000-02
Chr02	irgsp1_rep	CDS	35881754	35881841	.	+	0	Parent=Os02t0834000-02
Chr02	irgsp1_rep	CDS	35881951	35882052	.	+	2	Parent=Os02t0834000-02
Chr02	irgsp1_rep	CDS	35882157	35882222	.	+	2	Parent=Os02t0834000-02
Chr02	irgsp1_rep	CDS	35884417	35884481	.	+	2	Parent=Os02t0834000-02
Chr02	irgsp1_rep	CDS	35884568	35884633	.	+	0	Parent=Os02t0834000-02
Chr02	irgsp1_rep	CDS	35885151	35885252	.	+	0	Parent=Os02t0834000-02
Chr02	irgsp1_rep	three_prime_UTR	35885253	35885672	.	+	.	Parent=Os02t0834000-02
Chr02	irgsp1_rep	mRNA	35881942	35885265	.	-	.	ID=Os02t0834025-00;Name=Os02t0834025-00;Locus_id=Os02g0834025;Note=Non-protein coding transcript.;Transcript_evidence=BT016448 (DDBJ);ORF_evidence=NONE;TENOR=Os02t0834025-00
Chr02	irgsp1_rep	exon	35885154	35885265	.	-	.	Parent=Os02t0834025-00
Chr02	irgsp1_rep	exon	35884587	35884636	.	-	.	Parent=Os02t0834025-00
Chr02	irgsp1_rep	exon	35884408	35884500	.	-	.	Parent=Os02t0834025-00
Chr02	irgsp1_rep	exon	35882139	35882218	.	-	.	Parent=Os02t0834025-00
Chr02	irgsp1_rep	exon	35881942	35882032	.	-	.	Parent=Os02t0834025-00
Chr02	irgsp1_rep	mRNA	35888179	35888743	.	-	.	ID=Os02t0834050-00;Name=Os02t0834050-00;Locus_id=Os02g0834050;Note=Non-protein coding transcript.;Transcript_evidence=CT835311 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os02t0834050-00
Chr02	irgsp1_rep	exon	35888179	35888743	.	-	.	Parent=Os02t0834050-00
Chr02	irgsp1_rep	mRNA	35889064	35889853	.	-	.	ID=Os02t0834100-01;Name=Os02t0834100-01;Locus_id=Os02g0834100;Note=Hypothetical gene.;Transcript_evidence=AK111005 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-174-F04;Expression=AK111005;TENOR=Os02t0834100-01;KEGG=Os02t0834100-01
Chr02	irgsp1_rep	five_prime_UTR	35889853	35889853	.	-	.	Parent=Os02t0834100-01
Chr02	irgsp1_rep	CDS	35889598	35889852	.	-	0	Parent=Os02t0834100-01
Chr02	irgsp1_rep	three_prime_UTR	35889064	35889597	.	-	.	Parent=Os02t0834100-01
Chr02	irgsp1_rep	mRNA	35890433	35891445	.	-	.	ID=Os02t0834300-01;Name=Os02t0834300-01;Locus_id=Os02g0834300;Note=Beta tubulin%2C autoregulation binding site domain containing protein.;Transcript_evidence=AK119712 (DDBJ%2C Best hit);ORF_evidence=A2XBC0 (UniProt);NIAS_FLcDNA=002-157-F01;Expression=AK119712;TENOR=Os02t0834300-01;KEGG=Os02t0834300-01
Chr02	irgsp1_rep	five_prime_UTR	35891339	35891445	.	-	.	Parent=Os02t0834300-01
Chr02	irgsp1_rep	CDS	35891260	35891338	.	-	0	Parent=Os02t0834300-01
Chr02	irgsp1_rep	CDS	35890509	35891122	.	-	2	Parent=Os02t0834300-01
Chr02	irgsp1_rep	three_prime_UTR	35890433	35890508	.	-	.	Parent=Os02t0834300-01
Chr02	irgsp1_rep	mRNA	35923906	35929717	.	+	.	ID=Os02t0834700-01;Name=Os02t0834700-01;Locus_id=Os02g0834700;Note=Similar to Cell division inhibitor.;Transcript_evidence=AK067965 (DDBJ%2C Best hit);ORF_evidence=NP_565505.1 (RefSeq);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),Sugar nucleotide epimerase YfcH%2C putative (IPR010099),Domain of unknown function DUF1731%2C C-terminal (IPR013549),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013124G04;Expression=AK067965;TENOR=Os02t0834700-01;KEGG=Os02t0834700-01
Chr02	irgsp1_rep	five_prime_UTR	35923906	35923960	.	+	.	Parent=Os02t0834700-01
Chr02	irgsp1_rep	CDS	35923961	35924189	.	+	0	Parent=Os02t0834700-01
Chr02	irgsp1_rep	CDS	35924306	35924365	.	+	2	Parent=Os02t0834700-01
Chr02	irgsp1_rep	CDS	35924606	35924724	.	+	2	Parent=Os02t0834700-01
Chr02	irgsp1_rep	CDS	35926912	35926956	.	+	0	Parent=Os02t0834700-01
Chr02	irgsp1_rep	CDS	35927105	35927183	.	+	0	Parent=Os02t0834700-01
Chr02	irgsp1_rep	CDS	35927284	35927345	.	+	2	Parent=Os02t0834700-01
Chr02	irgsp1_rep	CDS	35927439	35927544	.	+	0	Parent=Os02t0834700-01
Chr02	irgsp1_rep	CDS	35927700	35927760	.	+	2	Parent=Os02t0834700-01
Chr02	irgsp1_rep	CDS	35928604	35928674	.	+	1	Parent=Os02t0834700-01
Chr02	irgsp1_rep	CDS	35928966	35929105	.	+	2	Parent=Os02t0834700-01
Chr02	irgsp1_rep	CDS	35929394	35929501	.	+	0	Parent=Os02t0834700-01
Chr02	irgsp1_rep	three_prime_UTR	35929502	35929717	.	+	.	Parent=Os02t0834700-01
Chr02	irgsp1_rep	mRNA	35924012	35929656	.	+	.	ID=Os02t0834700-02;Name=Os02t0834700-02;Locus_id=Os02g0834700;Note=Similar to cDNA clone:J013124G04%2C full insert sequence.;Transcript_evidence=AK061331 (DDBJ%2C Best hit);ORF_evidence=B7EE89 (UniProt);InterPro=Sugar nucleotide epimerase YfcH%2C putative (IPR010099);NIAS_FLcDNA=006-303-A06;Expression=AK061331;TENOR=Os02t0834700-02;KEGG=Os02t0834700-02
Chr02	irgsp1_rep	five_prime_UTR	35924012	35924189	.	+	.	Parent=Os02t0834700-02
Chr02	irgsp1_rep	five_prime_UTR	35924306	35924375	.	+	.	Parent=Os02t0834700-02
Chr02	irgsp1_rep	five_prime_UTR	35924606	35924694	.	+	.	Parent=Os02t0834700-02
Chr02	irgsp1_rep	CDS	35924695	35924724	.	+	0	Parent=Os02t0834700-02
Chr02	irgsp1_rep	CDS	35926912	35926956	.	+	0	Parent=Os02t0834700-02
Chr02	irgsp1_rep	CDS	35927105	35927183	.	+	0	Parent=Os02t0834700-02
Chr02	irgsp1_rep	CDS	35927284	35927375	.	+	2	Parent=Os02t0834700-02
Chr02	irgsp1_rep	three_prime_UTR	35927376	35927544	.	+	.	Parent=Os02t0834700-02
Chr02	irgsp1_rep	three_prime_UTR	35927700	35927760	.	+	.	Parent=Os02t0834700-02
Chr02	irgsp1_rep	three_prime_UTR	35928604	35928674	.	+	.	Parent=Os02t0834700-02
Chr02	irgsp1_rep	three_prime_UTR	35928966	35929105	.	+	.	Parent=Os02t0834700-02
Chr02	irgsp1_rep	three_prime_UTR	35929394	35929656	.	+	.	Parent=Os02t0834700-02
Chr02	irgsp1_rep	mRNA	35929750	35930592	.	+	.	ID=Os02t0834800-01;Name=Os02t0834800-01;Locus_id=Os02g0834800;Note=Hypothetical protein.;Transcript_evidence=AK107936 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-135-A08;TENOR=Os02t0834800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr02	irgsp1_rep	five_prime_UTR	35929750	35929971	.	+	.	Parent=Os02t0834800-01
Chr02	irgsp1_rep	five_prime_UTR	35930178	35930259	.	+	.	Parent=Os02t0834800-01
Chr02	irgsp1_rep	CDS	35930260	35930592	.	+	0	Parent=Os02t0834800-01
Chr03	irgsp1_rep	mRNA	4583	6476	.	+	.	ID=Os03t0100010-00;Name=Os03t0100010-00;Locus_id=Os03g0100010;Note=Conserved hypothetical protein.;Transcript_evidence=AK333943 (DDBJ);ORF_evidence=A2XBE9 (UniProt);TENOR=Os03t0100010-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	4583	4636	.	+	.	Parent=Os03t0100010-00
Chr03	irgsp1_rep	CDS	4637	5071	.	+	0	Parent=Os03t0100010-00
Chr03	irgsp1_rep	CDS	5174	5422	.	+	0	Parent=Os03t0100010-00
Chr03	irgsp1_rep	CDS	5530	5865	.	+	0	Parent=Os03t0100010-00
Chr03	irgsp1_rep	three_prime_UTR	5866	6136	.	+	.	Parent=Os03t0100010-00
Chr03	irgsp1_rep	three_prime_UTR	6195	6302	.	+	.	Parent=Os03t0100010-00
Chr03	irgsp1_rep	three_prime_UTR	6401	6476	.	+	.	Parent=Os03t0100010-00
Chr03	irgsp1_rep	mRNA	8552	9736	.	-	.	ID=Os03t0100020-01;Name=Os03t0100020-01;Locus_id=Os03g0100020;CGSNL Gene Symbol=TET4;CGSNL Gene Name=TETRASPANIN 4;Oryzabase Gene Symbol Synonym(s)=OsTET4;Oryzabase Gene Name Synonym(s)=tetraspanin 4;Note=Similar to predicted protein.;Transcript_evidence=AK073982 (DDBJ%2C Best hit);ORF_evidence=NP_199482.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Tetraspanin%2C subgroup (IPR000301),Tetraspanin (IPR018499);NIAS_FLcDNA=J033076B15;Oryzabase=20309;TENOR=Os03t0100020-01;KEGG=Os03t0100020-01
Chr03	irgsp1_rep	five_prime_UTR	9496	9736	.	-	.	Parent=Os03t0100020-01
Chr03	irgsp1_rep	CDS	8671	9495	.	-	0	Parent=Os03t0100020-01
Chr03	irgsp1_rep	three_prime_UTR	8552	8670	.	-	.	Parent=Os03t0100020-01
Chr03	irgsp1_rep	mRNA	13259	16541	.	+	.	ID=Os03t0100030-01;Name=Os03t0100030-01;Locus_id=Os03g0100030;RAP-DB Gene Symbol Synonym(s)=OsG;CGSNL Gene Symbol=G;Oryzabase Gene Symbol Synonym(s)=OsG;Note=Rice ortholog of soybean stay-green gene G (GmG)%2C Control of seed dormancy;Transcript_evidence=AK068177;ORF_evidence=A3AD50;GO=Biological Process: CAAX-box protein processing (GO:0071586),Molecular Function: cysteine-type endopeptidase activity (GO:0004197),Cellular Component: membrane (GO:0016020),Cellular Component: integral component of endoplasmic reticulum membrane (GO:0030176);InterPro=CAAX prenyl protease 2 (IPR003675);NIAS_FLcDNA=J013131A16;Manual Curation=November 27%2C 2019;Literature_PMID=30250128;Oryzabase=22678;TENOR=Os03t0100030-01;KEGG=Os03t0100030-01
Chr03	irgsp1_rep	five_prime_UTR	13259	13618	.	+	.	Parent=Os03t0100030-01
Chr03	irgsp1_rep	CDS	13619	13961	.	+	0	Parent=Os03t0100030-01
Chr03	irgsp1_rep	CDS	14082	14233	.	+	2	Parent=Os03t0100030-01
Chr03	irgsp1_rep	CDS	14307	14402	.	+	0	Parent=Os03t0100030-01
Chr03	irgsp1_rep	CDS	15125	15187	.	+	0	Parent=Os03t0100030-01
Chr03	irgsp1_rep	CDS	15378	15446	.	+	0	Parent=Os03t0100030-01
Chr03	irgsp1_rep	CDS	15539	15641	.	+	0	Parent=Os03t0100030-01
Chr03	irgsp1_rep	CDS	15749	15820	.	+	2	Parent=Os03t0100030-01
Chr03	irgsp1_rep	CDS	15940	16028	.	+	2	Parent=Os03t0100030-01
Chr03	irgsp1_rep	CDS	16133	16288	.	+	0	Parent=Os03t0100030-01
Chr03	irgsp1_rep	three_prime_UTR	16289	16541	.	+	.	Parent=Os03t0100030-01
Chr03	irgsp1_rep	mRNA	19107	20472	.	+	.	ID=Os03t0100040-01;Name=Os03t0100040-01;Locus_id=Os03g0100040;Note=Similar to Ribose-phosphate pyrophosphokinase 1 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 1).;Transcript_evidence=AK067951 (DDBJ%2C Best hit);ORF_evidence=Q9XG98 (UniProt);GO=Biological Process: nucleoside metabolic process (GO:0009116),Biological Process: nucleotide biosynthetic process (GO:0009165),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: ribose phosphate diphosphokinase activity (GO:0004749);InterPro=Phosphoribosyltransferase (IPR000836),Ribose-phosphate diphosphokinase (IPR005946);NIAS_FLcDNA=J013128O15;TENOR=Os03t0100040-01;KEGG=Os03t0100040-01 (EC:2.7.6.1)
Chr03	irgsp1_rep	five_prime_UTR	19107	19134	.	+	.	Parent=Os03t0100040-01
Chr03	irgsp1_rep	CDS	19135	20283	.	+	0	Parent=Os03t0100040-01
Chr03	irgsp1_rep	three_prime_UTR	20284	20472	.	+	.	Parent=Os03t0100040-01
Chr03	irgsp1_rep	mRNA	20294	23572	.	-	.	ID=Os03t0100050-01;Name=Os03t0100050-01;Locus_id=Os03g0100050;Note=Inner nuclear membrane protein MAN1 domain containing protein.;Transcript_evidence=AK066383 (DDBJ%2C Best hit);ORF_evidence=Q10T70 (UniProt);GO=Cellular Component: integral to nuclear inner membrane (GO:0005639);InterPro=Inner nuclear membrane protein MAN1 (IPR018996);NIAS_FLcDNA=J013063O13;TENOR=Os03t0100050-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	23503	23572	.	-	.	Parent=Os03t0100050-01
Chr03	irgsp1_rep	CDS	23295	23502	.	-	0	Parent=Os03t0100050-01
Chr03	irgsp1_rep	CDS	22968	23200	.	-	2	Parent=Os03t0100050-01
Chr03	irgsp1_rep	three_prime_UTR	22909	22967	.	-	.	Parent=Os03t0100050-01
Chr03	irgsp1_rep	three_prime_UTR	22652	22797	.	-	.	Parent=Os03t0100050-01
Chr03	irgsp1_rep	three_prime_UTR	22452	22566	.	-	.	Parent=Os03t0100050-01
Chr03	irgsp1_rep	three_prime_UTR	21731	22379	.	-	.	Parent=Os03t0100050-01
Chr03	irgsp1_rep	three_prime_UTR	20704	20791	.	-	.	Parent=Os03t0100050-01
Chr03	irgsp1_rep	three_prime_UTR	20294	20540	.	-	.	Parent=Os03t0100050-01
Chr03	irgsp1_rep	mRNA	26526	27352	.	+	.	ID=Os03t0100100-01;Name=Os03t0100100-01;Locus_id=Os03g0100100;Note=Pectinesterase inhibitor domain containing protein.;Transcript_evidence=AK107110 (DDBJ%2C Best hit),AK120771 (DDBJ%2C Best hit);ORF_evidence=NP_001173225.1 (RefSeq);GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);NIAS_FLcDNA=002-123-A03,J023008H17;Expression=AK107110;TENOR=Os03t0100100-01;KEGG=Os03t0100100-01
Chr03	irgsp1_rep	five_prime_UTR	26526	26562	.	+	.	Parent=Os03t0100100-01
Chr03	irgsp1_rep	CDS	26563	27174	.	+	0	Parent=Os03t0100100-01
Chr03	irgsp1_rep	three_prime_UTR	27175	27352	.	+	.	Parent=Os03t0100100-01
Chr03	irgsp1_rep	mRNA	27179	28059	.	-	.	ID=Os03t0100200-01;Name=Os03t0100200-01;Locus_id=Os03g0100200;Note=Transcriptional coactivator/pterin dehydratase family protein.;Transcript_evidence=AK072547 (DDBJ%2C Best hit),AK104982 (DDBJ%2C Best hit);ORF_evidence=NP_199924.1 (RefSeq);GO=Biological Process: tetrahydrobiopterin biosynthetic process (GO:0006729),Molecular Function: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity (GO:0008124);InterPro=Transcriptional coactivator/pterin dehydratase (IPR001533);NIAS_FLcDNA=J023131F13,001-125-G06;TENOR=Os03t0100200-01
Chr03	irgsp1_rep	five_prime_UTR	28008	28059	.	-	.	Parent=Os03t0100200-01
Chr03	irgsp1_rep	CDS	27396	28007	.	-	0	Parent=Os03t0100200-01
Chr03	irgsp1_rep	three_prime_UTR	27179	27395	.	-	.	Parent=Os03t0100200-01
Chr03	irgsp1_rep	mRNA	28462	28525	.	-	.	ID=Os03t0100225-00;Name=Os03t0100225-00;Locus_id=Os03g0100225;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0100225-00
Chr03	irgsp1_rep	exon	28462	28525	.	-	.	Parent=Os03t0100225-00
Chr03	irgsp1_rep	mRNA	63385	66118	.	+	.	ID=Os03t0100300-01;Name=Os03t0100300-01;Locus_id=Os03g0100300;CGSNL Gene Symbol=CYP35;CGSNL Gene Name=CYCLOPHILIN 35;Oryzabase Gene Symbol Synonym(s)=OsCYP35;Oryzabase Gene Name Synonym(s)=cyclophilin 35;Note=Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type domain containing protein.;Transcript_evidence=AK106235 (DDBJ%2C Best hit);ORF_evidence=NP_567522.5 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);InterPro=Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type (IPR002130),Cyclophilin-like (IPR015891);NIAS_FLcDNA=002-100-C01;Oryzabase=19048;Expression=AK106235;TENOR=Os03t0100300-01;KEGG=Os03t0100300-01
Chr03	irgsp1_rep	five_prime_UTR	63385	63481	.	+	.	Parent=Os03t0100300-01
Chr03	irgsp1_rep	CDS	63482	63856	.	+	0	Parent=Os03t0100300-01
Chr03	irgsp1_rep	CDS	64029	64127	.	+	0	Parent=Os03t0100300-01
Chr03	irgsp1_rep	CDS	64352	64396	.	+	0	Parent=Os03t0100300-01
Chr03	irgsp1_rep	CDS	65257	65394	.	+	0	Parent=Os03t0100300-01
Chr03	irgsp1_rep	CDS	65505	65843	.	+	0	Parent=Os03t0100300-01
Chr03	irgsp1_rep	three_prime_UTR	65844	66118	.	+	.	Parent=Os03t0100300-01
Chr03	irgsp1_rep	mRNA	66406	71674	.	+	.	ID=Os03t0100400-01;Name=Os03t0100400-01;Locus_id=Os03g0100400;Oryzabase Gene Symbol Synonym(s)=XPF (Rad1)%2C XPF%2C Rad1;Note=Similar to DNA repair endonuclease UVH1 (EC 3.1.-.-) (Ultraviolet hypersensitive 1) (AtRAD1) (DNA excision repair protein XP-F homolog).;Transcript_evidence=AK068556 (DDBJ%2C Best hit),AK121880 (DDBJ%2C Best hit);ORF_evidence=NP_198931.1 (RefSeq);GO=Biological Process: DNA metabolic process (GO:0006259),Molecular Function: DNA binding (GO:0003677),Molecular Function: nuclease activity (GO:0004518);InterPro=ERCC4 domain (IPR006166),RuvA domain 2-like (IPR010994),Restriction endonuclease%2C type II-like (IPR011335),DNA repair nuclease%2C XPF-type/Helicase (IPR020819);NIAS_FLcDNA=J013151H20,J033104L13;Oryzabase=21265;Expression=AK068556;TENOR=Os03t0100400-01;KEGG=Os03t0100400-01 (EC:3.1.-.-)
Chr03	irgsp1_rep	five_prime_UTR	66406	66458	.	+	.	Parent=Os03t0100400-01
Chr03	irgsp1_rep	CDS	66459	67342	.	+	0	Parent=Os03t0100400-01
Chr03	irgsp1_rep	CDS	67479	67708	.	+	1	Parent=Os03t0100400-01
Chr03	irgsp1_rep	CDS	68615	68724	.	+	2	Parent=Os03t0100400-01
Chr03	irgsp1_rep	CDS	69034	69198	.	+	0	Parent=Os03t0100400-01
Chr03	irgsp1_rep	CDS	69325	70116	.	+	0	Parent=Os03t0100400-01
Chr03	irgsp1_rep	CDS	70383	70493	.	+	0	Parent=Os03t0100400-01
Chr03	irgsp1_rep	CDS	70588	70848	.	+	0	Parent=Os03t0100400-01
Chr03	irgsp1_rep	CDS	71068	71291	.	+	0	Parent=Os03t0100400-01
Chr03	irgsp1_rep	CDS	71388	71598	.	+	1	Parent=Os03t0100400-01
Chr03	irgsp1_rep	three_prime_UTR	71599	71674	.	+	.	Parent=Os03t0100400-01
Chr03	irgsp1_rep	mRNA	84121	85526	.	+	.	ID=Os03t0100500-01;Name=Os03t0100500-01;Locus_id=Os03g0100500;Note=Similar to TAR RNA loop binding protein (TAR (HIV) RNA binding protein 1).;Transcript_evidence=AK063593 (DDBJ%2C Best hit);ORF_evidence=Q10T58 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Molecular Function: RNA binding (GO:0003723),Molecular Function: RNA methyltransferase activity (GO:0008173);InterPro=tRNA/rRNA methyltransferase%2C SpoU (IPR001537);NIAS_FLcDNA=001-118-B02;Expression=AK063593;TENOR=Os03t0100500-01;KEGG=Os03t0100500-01
Chr03	irgsp1_rep	CDS	84121	84235	.	+	0	Parent=Os03t0100500-01
Chr03	irgsp1_rep	CDS	84483	84634	.	+	2	Parent=Os03t0100500-01
Chr03	irgsp1_rep	CDS	84709	84779	.	+	0	Parent=Os03t0100500-01
Chr03	irgsp1_rep	CDS	84867	85023	.	+	1	Parent=Os03t0100500-01
Chr03	irgsp1_rep	CDS	85173	85340	.	+	0	Parent=Os03t0100500-01
Chr03	irgsp1_rep	three_prime_UTR	85341	85526	.	+	.	Parent=Os03t0100500-01
Chr03	irgsp1_rep	mRNA	89043	99289	.	+	.	ID=Os03t0100800-01;Name=Os03t0100800-01;Locus_id=Os03g0100800;RAP-DB Gene Symbol Synonym(s)=Os-HA1%2C OsA8;RAP-DB Gene Name Synonym(s)=H<sup>+</sup>-ATPase 1%2C plasma membrane H<sup>+</sup>-ATPase 8;CGSNL Gene Symbol=AHA8;CGSNL Gene Name=H+-ATPASE 8;Oryzabase Gene Symbol Synonym(s)=OSA8%2C OsA8%2C A8%2C osAHA8%2C AHA8%2C Os-HA1%2C OsHA1;Oryzabase Gene Name Synonym(s)=plasma membrane H+-ATPase 8%2C PM H+-ATPase 8%2C plasma membrane H+ P-Type ATPase 8%2C H+-ATPase 1;Note=Plasma membrane proton pump ATPase (H<sup>+</sup>-ATPase)%2C Pi acquisition and transport%2C Nutrient uptake during mycorrhizal symbioses;Transcript_evidence=AK068699;ORF_evidence=Q10T57;GO=Biological Process: proton export across plasma membrane (GO:0120029),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: proton-exporting ATPase activity%2C phosphorylative mechanism (GO:0008553),Cellular Component: integral component of membrane (GO:0016021);InterPro=P-type ATPase%2C transmembrane domain superfamily (IPR023298),P-type ATPase%2C A domain superfamily (IPR008250),HAD-like superfamily (IPR036412),P-type ATPase%2C cytoplasmic domain N (IPR023299),P-type ATPase (IPR001757),P-type ATPase%2C subfamily IIIA (IPR006534),Cation-transporting P-type ATPase%2C N-terminal (IPR004014),P-type ATPase%2C phosphorylation site (IPR018303);NIAS_FLcDNA=J013158O09;Manual Curation=May 20%2C 2020;Literature_PMID=24781115,19047499;Oryzabase=11190;Expression=AK068699;TENOR=Os03t0100800-01;KEGG=Os03t0100800-01 (EC:3.6.1.3%2C EC:7.1.2.1);Subcellular location=plasma membrane (GO:0005886)
Chr03	irgsp1_rep	five_prime_UTR	89043	89339	.	+	.	Parent=Os03t0100800-01
Chr03	irgsp1_rep	CDS	89340	89396	.	+	0	Parent=Os03t0100800-01
Chr03	irgsp1_rep	CDS	89943	90179	.	+	0	Parent=Os03t0100800-01
Chr03	irgsp1_rep	CDS	90301	90438	.	+	0	Parent=Os03t0100800-01
Chr03	irgsp1_rep	CDS	90524	90658	.	+	0	Parent=Os03t0100800-01
Chr03	irgsp1_rep	CDS	90784	90963	.	+	0	Parent=Os03t0100800-01
Chr03	irgsp1_rep	CDS	91148	91354	.	+	0	Parent=Os03t0100800-01
Chr03	irgsp1_rep	CDS	91474	91593	.	+	0	Parent=Os03t0100800-01
Chr03	irgsp1_rep	CDS	91893	92012	.	+	0	Parent=Os03t0100800-01
Chr03	irgsp1_rep	CDS	92411	92533	.	+	0	Parent=Os03t0100800-01
Chr03	irgsp1_rep	CDS	93720	93824	.	+	0	Parent=Os03t0100800-01
Chr03	irgsp1_rep	CDS	93907	94051	.	+	0	Parent=Os03t0100800-01
Chr03	irgsp1_rep	CDS	95096	95260	.	+	2	Parent=Os03t0100800-01
Chr03	irgsp1_rep	CDS	95322	95560	.	+	2	Parent=Os03t0100800-01
Chr03	irgsp1_rep	CDS	96105	96137	.	+	0	Parent=Os03t0100800-01
Chr03	irgsp1_rep	CDS	96630	96711	.	+	0	Parent=Os03t0100800-01
Chr03	irgsp1_rep	CDS	96853	97013	.	+	2	Parent=Os03t0100800-01
Chr03	irgsp1_rep	CDS	97392	97604	.	+	0	Parent=Os03t0100800-01
Chr03	irgsp1_rep	CDS	98442	98624	.	+	0	Parent=Os03t0100800-01
Chr03	irgsp1_rep	CDS	98704	98873	.	+	0	Parent=Os03t0100800-01
Chr03	irgsp1_rep	CDS	99028	99127	.	+	1	Parent=Os03t0100800-01
Chr03	irgsp1_rep	three_prime_UTR	99128	99289	.	+	.	Parent=Os03t0100800-01
Chr03	irgsp1_rep	mRNA	89933	98878	.	-	.	ID=Os03t0100850-00;Name=Os03t0100850-00;Locus_id=Os03g0100850;Note=Hypothetical protein.;Transcript_evidence=tplb0039e05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0100850-00
Chr03	irgsp1_rep	five_prime_UTR	98719	98878	.	-	.	Parent=Os03t0100850-00
Chr03	irgsp1_rep	five_prime_UTR	98450	98644	.	-	.	Parent=Os03t0100850-00
Chr03	irgsp1_rep	five_prime_UTR	97436	97611	.	-	.	Parent=Os03t0100850-00
Chr03	irgsp1_rep	five_prime_UTR	96866	97026	.	-	.	Parent=Os03t0100850-00
Chr03	irgsp1_rep	five_prime_UTR	96600	96723	.	-	.	Parent=Os03t0100850-00
Chr03	irgsp1_rep	five_prime_UTR	95506	95559	.	-	.	Parent=Os03t0100850-00
Chr03	irgsp1_rep	CDS	95307	95505	.	-	0	Parent=Os03t0100850-00
Chr03	irgsp1_rep	CDS	95100	95245	.	-	2	Parent=Os03t0100850-00
Chr03	irgsp1_rep	three_prime_UTR	95093	95099	.	-	.	Parent=Os03t0100850-00
Chr03	irgsp1_rep	three_prime_UTR	93914	94048	.	-	.	Parent=Os03t0100850-00
Chr03	irgsp1_rep	three_prime_UTR	93729	93835	.	-	.	Parent=Os03t0100850-00
Chr03	irgsp1_rep	three_prime_UTR	92409	92546	.	-	.	Parent=Os03t0100850-00
Chr03	irgsp1_rep	three_prime_UTR	91860	92010	.	-	.	Parent=Os03t0100850-00
Chr03	irgsp1_rep	three_prime_UTR	91454	91566	.	-	.	Parent=Os03t0100850-00
Chr03	irgsp1_rep	three_prime_UTR	91156	91342	.	-	.	Parent=Os03t0100850-00
Chr03	irgsp1_rep	three_prime_UTR	90773	90969	.	-	.	Parent=Os03t0100850-00
Chr03	irgsp1_rep	three_prime_UTR	90531	90643	.	-	.	Parent=Os03t0100850-00
Chr03	irgsp1_rep	three_prime_UTR	90347	90448	.	-	.	Parent=Os03t0100850-00
Chr03	irgsp1_rep	three_prime_UTR	89933	90206	.	-	.	Parent=Os03t0100850-00
Chr03	irgsp1_rep	mRNA	100746	104014	.	+	.	ID=Os03t0100900-01;Name=Os03t0100900-01;Locus_id=Os03g0100900;Note=Protein of unknown function DUF862%2C eukaryotic domain containing protein.;Transcript_evidence=AK103335 (DDBJ%2C Best hit);ORF_evidence=B4FKS4 (UniProt);InterPro=Domain of unknown function DUF862%2C eukaryotic (IPR008580);NIAS_FLcDNA=J033125P20;Expression=AK103335;TENOR=Os03t0100900-01;KEGG=Os03t0100900-01
Chr03	irgsp1_rep	five_prime_UTR	100746	100854	.	+	.	Parent=Os03t0100900-01
Chr03	irgsp1_rep	CDS	100855	101086	.	+	0	Parent=Os03t0100900-01
Chr03	irgsp1_rep	CDS	102079	102366	.	+	2	Parent=Os03t0100900-01
Chr03	irgsp1_rep	CDS	102443	102523	.	+	2	Parent=Os03t0100900-01
Chr03	irgsp1_rep	CDS	103330	103466	.	+	2	Parent=Os03t0100900-01
Chr03	irgsp1_rep	three_prime_UTR	103467	104014	.	+	.	Parent=Os03t0100900-01
Chr03	irgsp1_rep	mRNA	100784	103899	.	+	.	ID=Os03t0100900-02;Name=Os03t0100900-02;Locus_id=Os03g0100900;Note=Protein of unknown function DUF862%2C eukaryotic domain containing protein.;Transcript_evidence=AK061783 (DDBJ%2C Best hit);ORF_evidence=B4FKS4 (UniProt);InterPro=Domain of unknown function DUF862%2C eukaryotic (IPR008580);NIAS_FLcDNA=001-039-E05;Expression=AK061783;TENOR=Os03t0100900-02;KEGG=Os03t0100900-02
Chr03	irgsp1_rep	five_prime_UTR	100784	100854	.	+	.	Parent=Os03t0100900-02
Chr03	irgsp1_rep	CDS	100855	101086	.	+	0	Parent=Os03t0100900-02
Chr03	irgsp1_rep	CDS	102079	102366	.	+	2	Parent=Os03t0100900-02
Chr03	irgsp1_rep	CDS	102443	102523	.	+	2	Parent=Os03t0100900-02
Chr03	irgsp1_rep	CDS	103330	103466	.	+	2	Parent=Os03t0100900-02
Chr03	irgsp1_rep	three_prime_UTR	103467	103899	.	+	.	Parent=Os03t0100900-02
Chr03	irgsp1_rep	mRNA	104257	105299	.	-	.	ID=Os03t0101000-01;Name=Os03t0101000-01;Locus_id=Os03g0101000;Note=Similar to AMP binding protein.;Transcript_evidence=AK105139 (DDBJ%2C Best hit);ORF_evidence=B6ST13 (UniProt);NIAS_FLcDNA=001-102-F12;TENOR=Os03t0101000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	104980	105299	.	-	.	Parent=Os03t0101000-01
Chr03	irgsp1_rep	CDS	104776	104979	.	-	0	Parent=Os03t0101000-01
Chr03	irgsp1_rep	CDS	104550	104567	.	-	0	Parent=Os03t0101000-01
Chr03	irgsp1_rep	three_prime_UTR	104257	104549	.	-	.	Parent=Os03t0101000-01
Chr03	irgsp1_rep	mRNA	106528	110519	.	+	.	ID=Os03t0101100-01;Name=Os03t0101100-01;Locus_id=Os03g0101100;Note=Similar to Palmitoyl-protein thioesterase-like.;Transcript_evidence=AK120839 (DDBJ%2C Best hit);ORF_evidence=Q10T54 (UniProt);GO=Biological Process: protein modification process (GO:0006464),Molecular Function: palmitoyl-(protein) hydrolase activity (GO:0008474);InterPro=Palmitoyl protein thioesterase (IPR002472);NIAS_FLcDNA=J023022G01;Expression=AK120839;TENOR=Os03t0101100-01;KEGG=Os03t0101100-01 (EC:3.1.2.22)
Chr03	irgsp1_rep	five_prime_UTR	106528	106607	.	+	.	Parent=Os03t0101100-01
Chr03	irgsp1_rep	CDS	106608	106701	.	+	0	Parent=Os03t0101100-01
Chr03	irgsp1_rep	CDS	106818	106878	.	+	2	Parent=Os03t0101100-01
Chr03	irgsp1_rep	CDS	107028	107079	.	+	1	Parent=Os03t0101100-01
Chr03	irgsp1_rep	CDS	107207	107227	.	+	0	Parent=Os03t0101100-01
Chr03	irgsp1_rep	CDS	107315	107368	.	+	0	Parent=Os03t0101100-01
Chr03	irgsp1_rep	CDS	107793	107843	.	+	0	Parent=Os03t0101100-01
Chr03	irgsp1_rep	CDS	108001	108063	.	+	0	Parent=Os03t0101100-01
Chr03	irgsp1_rep	CDS	108701	108766	.	+	0	Parent=Os03t0101100-01
Chr03	irgsp1_rep	CDS	108843	108881	.	+	0	Parent=Os03t0101100-01
Chr03	irgsp1_rep	CDS	109146	109268	.	+	0	Parent=Os03t0101100-01
Chr03	irgsp1_rep	CDS	109904	109996	.	+	0	Parent=Os03t0101100-01
Chr03	irgsp1_rep	CDS	110090	110314	.	+	0	Parent=Os03t0101100-01
Chr03	irgsp1_rep	three_prime_UTR	110315	110519	.	+	.	Parent=Os03t0101100-01
Chr03	irgsp1_rep	mRNA	110522	114247	.	-	.	ID=Os03t0101200-00;Name=Os03t0101200-00;Locus_id=Os03g0101200;CGSNL Gene Symbol=RLCK93;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 93;Oryzabase Gene Symbol Synonym(s)=OsPUB50%2C OsRLCK93;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 50%2C U-box protein 50%2C Receptor-like Cytoplasmic Kinase 93;Note=Similar to U-box domain containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10T52 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),U box domain (IPR003613),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=17841;TENOR=Os03t0101200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	114028	114247	.	-	0	Parent=Os03t0101200-00
Chr03	irgsp1_rep	CDS	113810	113931	.	-	2	Parent=Os03t0101200-00
Chr03	irgsp1_rep	CDS	113552	113664	.	-	0	Parent=Os03t0101200-00
Chr03	irgsp1_rep	CDS	113287	113462	.	-	1	Parent=Os03t0101200-00
Chr03	irgsp1_rep	CDS	112755	113035	.	-	2	Parent=Os03t0101200-00
Chr03	irgsp1_rep	CDS	112259	112369	.	-	0	Parent=Os03t0101200-00
Chr03	irgsp1_rep	CDS	111743	112171	.	-	0	Parent=Os03t0101200-00
Chr03	irgsp1_rep	CDS	110947	111577	.	-	0	Parent=Os03t0101200-00
Chr03	irgsp1_rep	CDS	110522	110736	.	-	2	Parent=Os03t0101200-00
Chr03	irgsp1_rep	mRNA	111357	111725	.	+	.	ID=Os03t0101250-01;Name=Os03t0101250-01;Locus_id=Os03g0101250;Note=Hypothetical gene.;Transcript_evidence=AK241727 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065199G05;TENOR=Os03t0101250-01;KEGG=Os03t0101250-01
Chr03	irgsp1_rep	five_prime_UTR	111357	111357	.	+	.	Parent=Os03t0101250-01
Chr03	irgsp1_rep	CDS	111358	111597	.	+	0	Parent=Os03t0101250-01
Chr03	irgsp1_rep	three_prime_UTR	111598	111725	.	+	.	Parent=Os03t0101250-01
Chr03	irgsp1_rep	mRNA	116257	119092	.	-	.	ID=Os03t0101300-01;Name=Os03t0101300-01;Locus_id=Os03g0101300;Oryzabase Gene Symbol Synonym(s)=FCO10;Oryzabase Gene Name Synonym(s)=Functioning in Cesium Over-transport 10;Note=Similar to Hexose transporter.;Transcript_evidence=AK100524 (DDBJ%2C Best hit);ORF_evidence=NP_001149551.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J023100P07;Oryzabase=21694;Expression=AK100524;TENOR=Os03t0101300-01;KEGG=Os03t0101300-01
Chr03	irgsp1_rep	five_prime_UTR	118937	119092	.	-	.	Parent=Os03t0101300-01
Chr03	irgsp1_rep	CDS	118807	118936	.	-	0	Parent=Os03t0101300-01
Chr03	irgsp1_rep	CDS	117770	118095	.	-	2	Parent=Os03t0101300-01
Chr03	irgsp1_rep	CDS	116584	117687	.	-	0	Parent=Os03t0101300-01
Chr03	irgsp1_rep	three_prime_UTR	116257	116583	.	-	.	Parent=Os03t0101300-01
Chr03	irgsp1_rep	mRNA	115791	118965	.	-	.	ID=Os03t0101300-02;Name=Os03t0101300-02;Locus_id=Os03g0101300;Oryzabase Gene Symbol Synonym(s)=FCO10;Oryzabase Gene Name Synonym(s)=Functioning in Cesium Over-transport 10;Note=Similar to Hexose transporter.;Transcript_evidence=AK069891 (DDBJ%2C Best hit);ORF_evidence=NP_001149551.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J023037O19;Oryzabase=21694;Expression=AK069891;TENOR=Os03t0101300-02;KEGG=Os03t0101300-02
Chr03	irgsp1_rep	five_prime_UTR	118937	118965	.	-	.	Parent=Os03t0101300-02
Chr03	irgsp1_rep	CDS	118807	118936	.	-	0	Parent=Os03t0101300-02
Chr03	irgsp1_rep	CDS	117770	118095	.	-	2	Parent=Os03t0101300-02
Chr03	irgsp1_rep	CDS	116584	117687	.	-	0	Parent=Os03t0101300-02
Chr03	irgsp1_rep	three_prime_UTR	115791	116583	.	-	.	Parent=Os03t0101300-02
Chr03	irgsp1_rep	mRNA	116578	118557	.	+	.	ID=Os03t0101400-01;Name=Os03t0101400-01;Locus_id=Os03g0101400;Note=Hypothetical protein.;Transcript_evidence=AK120679 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013162J03;Expression=AK120679;TENOR=Os03t0101400-01;KEGG=Os03t0101400-01
Chr03	irgsp1_rep	five_prime_UTR	116578	116670	.	+	.	Parent=Os03t0101400-01
Chr03	irgsp1_rep	CDS	116671	117756	.	+	0	Parent=Os03t0101400-01
Chr03	irgsp1_rep	three_prime_UTR	117757	118557	.	+	.	Parent=Os03t0101400-01
Chr03	irgsp1_rep	mRNA	120881	122838	.	-	.	ID=Os03t0101500-01;Name=Os03t0101500-01;Locus_id=Os03g0101500;Note=Similar to Phosphoglycerate mutase family protein.;Transcript_evidence=AK109299 (DDBJ%2C Best hit);ORF_evidence=C3SAD0 (UniProt);InterPro=PRIB5 (IPR012398),Histidine phosphatase superfamily%2C clade-1 (IPR013078);NIAS_FLcDNA=002-188-D09;TENOR=Os03t0101500-01;KEGG=Os03t0101500-01
Chr03	irgsp1_rep	five_prime_UTR	122796	122838	.	-	.	Parent=Os03t0101500-01
Chr03	irgsp1_rep	CDS	122520	122795	.	-	0	Parent=Os03t0101500-01
Chr03	irgsp1_rep	CDS	121704	121871	.	-	0	Parent=Os03t0101500-01
Chr03	irgsp1_rep	CDS	121499	121607	.	-	0	Parent=Os03t0101500-01
Chr03	irgsp1_rep	CDS	121128	121354	.	-	2	Parent=Os03t0101500-01
Chr03	irgsp1_rep	three_prime_UTR	120881	121127	.	-	.	Parent=Os03t0101500-01
Chr03	irgsp1_rep	mRNA	123104	125050	.	-	.	ID=Os03t0101600-01;Name=Os03t0101600-01;Locus_id=Os03g0101600;Oryzabase Gene Symbol Synonym(s)=CAD;Note=Similar to Oxidoreductase%2C zinc-binding dehydrogenase family protein%2C expressed.;Transcript_evidence=AK061143 (DDBJ%2C Best hit),AK069374 (DDBJ%2C Best hit);ORF_evidence=Q10T48 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040),Polyketide synthase%2C enoylreductase (IPR020843);NIAS_FLcDNA=006-208-C09,J023012O14;Oryzabase=23490;TENOR=Os03t0101600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	125050	125050	.	-	.	Parent=Os03t0101600-01
Chr03	irgsp1_rep	CDS	124585	125049	.	-	0	Parent=Os03t0101600-01
Chr03	irgsp1_rep	CDS	123927	124184	.	-	0	Parent=Os03t0101600-01
Chr03	irgsp1_rep	CDS	123237	123551	.	-	0	Parent=Os03t0101600-01
Chr03	irgsp1_rep	three_prime_UTR	123104	123236	.	-	.	Parent=Os03t0101600-01
Chr03	irgsp1_rep	mRNA	125350	132708	.	-	.	ID=Os03t0101700-01;Name=Os03t0101700-01;Locus_id=Os03g0101700;Oryzabase Gene Symbol Synonym(s)=Snf2P%2C OsSnf2P;Oryzabase Gene Name Synonym(s)=SNF2 family protein;Note=Similar to SNF2P.;Transcript_evidence=AK066228 (DDBJ%2C Best hit);ORF_evidence=Q8GSF4 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP binding (GO:0005524);InterPro=SNF2-related (IPR000330);NIAS_FLcDNA=J013058B09;Oryzabase=14519;TENOR=Os03t0101700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	132708	132708	.	-	.	Parent=Os03t0101700-01
Chr03	irgsp1_rep	CDS	132530	132707	.	-	0	Parent=Os03t0101700-01
Chr03	irgsp1_rep	CDS	132252	132454	.	-	2	Parent=Os03t0101700-01
Chr03	irgsp1_rep	three_prime_UTR	132136	132251	.	-	.	Parent=Os03t0101700-01
Chr03	irgsp1_rep	three_prime_UTR	131873	132039	.	-	.	Parent=Os03t0101700-01
Chr03	irgsp1_rep	three_prime_UTR	131663	131788	.	-	.	Parent=Os03t0101700-01
Chr03	irgsp1_rep	three_prime_UTR	130749	130929	.	-	.	Parent=Os03t0101700-01
Chr03	irgsp1_rep	three_prime_UTR	130069	130204	.	-	.	Parent=Os03t0101700-01
Chr03	irgsp1_rep	three_prime_UTR	129880	129997	.	-	.	Parent=Os03t0101700-01
Chr03	irgsp1_rep	three_prime_UTR	129419	129508	.	-	.	Parent=Os03t0101700-01
Chr03	irgsp1_rep	three_prime_UTR	128855	128962	.	-	.	Parent=Os03t0101700-01
Chr03	irgsp1_rep	three_prime_UTR	128567	128767	.	-	.	Parent=Os03t0101700-01
Chr03	irgsp1_rep	three_prime_UTR	128266	128391	.	-	.	Parent=Os03t0101700-01
Chr03	irgsp1_rep	three_prime_UTR	127492	128177	.	-	.	Parent=Os03t0101700-01
Chr03	irgsp1_rep	three_prime_UTR	127077	127222	.	-	.	Parent=Os03t0101700-01
Chr03	irgsp1_rep	three_prime_UTR	126251	126409	.	-	.	Parent=Os03t0101700-01
Chr03	irgsp1_rep	three_prime_UTR	125698	125824	.	-	.	Parent=Os03t0101700-01
Chr03	irgsp1_rep	three_prime_UTR	125350	125608	.	-	.	Parent=Os03t0101700-01
Chr03	irgsp1_rep	mRNA	135249	137516	.	+	.	ID=Os03t0101800-01;Name=Os03t0101800-01;Locus_id=Os03g0101800;Note=Similar to DUF614 containing protein.;Transcript_evidence=AK103196 (DDBJ%2C Best hit),AK061092 (DDBJ%2C Best hit),AK104399 (DDBJ%2C Best hit);ORF_evidence=C3SAD5 (UniProt);InterPro=Uncharacterised protein family Cys-rich (IPR006461);NIAS_FLcDNA=J033121P22,006-206-H10,006-202-D11;TENOR=Os03t0101800-01
Chr03	irgsp1_rep	five_prime_UTR	135249	135290	.	+	.	Parent=Os03t0101800-01
Chr03	irgsp1_rep	CDS	135291	135413	.	+	0	Parent=Os03t0101800-01
Chr03	irgsp1_rep	CDS	135486	135603	.	+	0	Parent=Os03t0101800-01
Chr03	irgsp1_rep	CDS	136223	136488	.	+	2	Parent=Os03t0101800-01
Chr03	irgsp1_rep	CDS	137018	137284	.	+	0	Parent=Os03t0101800-01
Chr03	irgsp1_rep	three_prime_UTR	137285	137516	.	+	.	Parent=Os03t0101800-01
Chr03	irgsp1_rep	mRNA	135252	137565	.	+	.	ID=Os03t0101800-02;Name=Os03t0101800-02;Locus_id=Os03g0101800;Note=Protein of unknown function Cys-rich family protein.;Transcript_evidence=AK061186 (DDBJ%2C Best hit);ORF_evidence=B6SGC5 (UniProt);InterPro=Uncharacterised protein family Cys-rich (IPR006461);NIAS_FLcDNA=006-209-E05;Expression=AK061186;TENOR=Os03t0101800-02;KEGG=Os03t0101800-02
Chr03	irgsp1_rep	five_prime_UTR	135252	135290	.	+	.	Parent=Os03t0101800-02
Chr03	irgsp1_rep	CDS	135291	135413	.	+	0	Parent=Os03t0101800-02
Chr03	irgsp1_rep	CDS	135486	135603	.	+	0	Parent=Os03t0101800-02
Chr03	irgsp1_rep	CDS	136223	136488	.	+	2	Parent=Os03t0101800-02
Chr03	irgsp1_rep	CDS	137018	137228	.	+	0	Parent=Os03t0101800-02
Chr03	irgsp1_rep	CDS	137320	137324	.	+	2	Parent=Os03t0101800-02
Chr03	irgsp1_rep	three_prime_UTR	137325	137565	.	+	.	Parent=Os03t0101800-02
Chr03	irgsp1_rep	mRNA	139453	143360	.	+	.	ID=Os03t0101900-01;Name=Os03t0101900-01;Locus_id=Os03g0101900;Note=Similar to Phosphatidylserine decarboxylase.;Transcript_evidence=AK072180 (DDBJ%2C Best hit);ORF_evidence=Q6RYE5 (UniProt);GO=Biological Process: phospholipid biosynthetic process (GO:0008654),Molecular Function: phosphatidylserine decarboxylase activity (GO:0004609);InterPro=Phosphatidylserine decarboxylase-related (IPR003817),Phosphatidylserine decarboxylase (IPR005221);NIAS_FLcDNA=J013139N24;Expression=AK072180;TENOR=Os03t0101900-01;KEGG=Os03t0101900-01 (EC:4.1.1.65)
Chr03	irgsp1_rep	five_prime_UTR	139453	139518	.	+	.	Parent=Os03t0101900-01
Chr03	irgsp1_rep	CDS	139519	139645	.	+	0	Parent=Os03t0101900-01
Chr03	irgsp1_rep	CDS	140056	140141	.	+	2	Parent=Os03t0101900-01
Chr03	irgsp1_rep	CDS	140376	140429	.	+	0	Parent=Os03t0101900-01
Chr03	irgsp1_rep	CDS	140518	140583	.	+	0	Parent=Os03t0101900-01
Chr03	irgsp1_rep	CDS	140660	140720	.	+	0	Parent=Os03t0101900-01
Chr03	irgsp1_rep	CDS	141110	141219	.	+	2	Parent=Os03t0101900-01
Chr03	irgsp1_rep	CDS	141316	141566	.	+	0	Parent=Os03t0101900-01
Chr03	irgsp1_rep	CDS	141903	142009	.	+	1	Parent=Os03t0101900-01
Chr03	irgsp1_rep	CDS	142095	142162	.	+	2	Parent=Os03t0101900-01
Chr03	irgsp1_rep	CDS	142277	142354	.	+	0	Parent=Os03t0101900-01
Chr03	irgsp1_rep	CDS	142723	142851	.	+	0	Parent=Os03t0101900-01
Chr03	irgsp1_rep	CDS	142994	143173	.	+	0	Parent=Os03t0101900-01
Chr03	irgsp1_rep	three_prime_UTR	143174	143360	.	+	.	Parent=Os03t0101900-01
Chr03	irgsp1_rep	mRNA	139518	143402	.	+	.	ID=Os03t0101900-02;Name=Os03t0101900-02;Locus_id=Os03g0101900;Note=Similar to Phosphatidylserine decarboxylase.;Transcript_evidence=AK098927 (DDBJ%2C Best hit);ORF_evidence=Q6RYE5 (UniProt);GO=Biological Process: phospholipid biosynthetic process (GO:0008654),Molecular Function: phosphatidylserine decarboxylase activity (GO:0004609);InterPro=Phosphatidylserine decarboxylase-related (IPR003817),Phosphatidylserine decarboxylase (IPR005221);NIAS_FLcDNA=J013008I04;Expression=AK098927;TENOR=Os03t0101900-02;KEGG=Os03t0101900-02 (EC:4.1.1.65)
Chr03	irgsp1_rep	five_prime_UTR	139518	139518	.	+	.	Parent=Os03t0101900-02
Chr03	irgsp1_rep	CDS	139519	139645	.	+	0	Parent=Os03t0101900-02
Chr03	irgsp1_rep	CDS	140056	140141	.	+	2	Parent=Os03t0101900-02
Chr03	irgsp1_rep	CDS	140376	140429	.	+	0	Parent=Os03t0101900-02
Chr03	irgsp1_rep	CDS	140518	140583	.	+	0	Parent=Os03t0101900-02
Chr03	irgsp1_rep	CDS	140660	140720	.	+	0	Parent=Os03t0101900-02
Chr03	irgsp1_rep	CDS	141110	141219	.	+	2	Parent=Os03t0101900-02
Chr03	irgsp1_rep	CDS	141316	141566	.	+	0	Parent=Os03t0101900-02
Chr03	irgsp1_rep	CDS	141903	142009	.	+	1	Parent=Os03t0101900-02
Chr03	irgsp1_rep	CDS	142095	142162	.	+	2	Parent=Os03t0101900-02
Chr03	irgsp1_rep	CDS	142277	142354	.	+	0	Parent=Os03t0101900-02
Chr03	irgsp1_rep	CDS	142723	142851	.	+	0	Parent=Os03t0101900-02
Chr03	irgsp1_rep	CDS	142994	143173	.	+	0	Parent=Os03t0101900-02
Chr03	irgsp1_rep	three_prime_UTR	143174	143402	.	+	.	Parent=Os03t0101900-02
Chr03	irgsp1_rep	mRNA	143838	144403	.	-	.	ID=Os03t0102000-01;Name=Os03t0102000-01;Locus_id=Os03g0102000;Note=Conserved hypothetical protein.;Transcript_evidence=AK062867 (DDBJ%2C Best hit);ORF_evidence=B9FA98 (UniProt);NIAS_FLcDNA=001-108-B11;TENOR=Os03t0102000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	144263	144403	.	-	.	Parent=Os03t0102000-01
Chr03	irgsp1_rep	CDS	144089	144262	.	-	0	Parent=Os03t0102000-01
Chr03	irgsp1_rep	three_prime_UTR	143838	143989	.	-	.	Parent=Os03t0102000-01
Chr03	irgsp1_rep	mRNA	144648	147769	.	+	.	ID=Os03t0102100-01;Name=Os03t0102100-01;Locus_id=Os03g0102100;Note=Similar to formyltetrahydrofolate deformylase.;Transcript_evidence=AK071358 (DDBJ%2C Best hit);ORF_evidence=NP_001152471.1 (RefSeq);GO=Biological Process: 'de novo' IMP biosynthetic process (GO:0006189),Biological Process: biosynthetic process (GO:0009058),Molecular Function: formyltetrahydrofolate deformylase activity (GO:0008864),Molecular Function: hydroxymethyl-%2C formyl- and related transferase activity (GO:0016742);InterPro=Formyl transferase%2C N-terminal (IPR002376),Formyltetrahydrofolate deformylase (IPR004810);NIAS_FLcDNA=J023089B21;TENOR=Os03t0102100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	144648	145687	.	+	.	Parent=Os03t0102100-01
Chr03	irgsp1_rep	CDS	145688	145836	.	+	0	Parent=Os03t0102100-01
Chr03	irgsp1_rep	CDS	146094	146244	.	+	1	Parent=Os03t0102100-01
Chr03	irgsp1_rep	CDS	146398	146471	.	+	0	Parent=Os03t0102100-01
Chr03	irgsp1_rep	CDS	146566	146725	.	+	1	Parent=Os03t0102100-01
Chr03	irgsp1_rep	CDS	147009	147107	.	+	0	Parent=Os03t0102100-01
Chr03	irgsp1_rep	CDS	147185	147271	.	+	0	Parent=Os03t0102100-01
Chr03	irgsp1_rep	CDS	147414	147560	.	+	0	Parent=Os03t0102100-01
Chr03	irgsp1_rep	three_prime_UTR	147561	147769	.	+	.	Parent=Os03t0102100-01
Chr03	irgsp1_rep	mRNA	144652	147750	.	+	.	ID=Os03t0102100-02;Name=Os03t0102100-02;Locus_id=Os03g0102100;Note=Formyltetrahydrofolate deformylase family protein.;Transcript_evidence=AK104164 (DDBJ%2C Best hit),AK060329 (DDBJ%2C Best hit);ORF_evidence=Q10T41 (UniProt);GO=Biological Process: 'de novo' IMP biosynthetic process (GO:0006189),Biological Process: biosynthetic process (GO:0009058),Molecular Function: formyltetrahydrofolate deformylase activity (GO:0008864),Molecular Function: hydroxymethyl-%2C formyl- and related transferase activity (GO:0016742);InterPro=Formyl transferase%2C N-terminal (IPR002376),Formyltetrahydrofolate deformylase (IPR004810);NIAS_FLcDNA=006-212-C05,001-008-A11;Expression=AK104164;TENOR=Os03t0102100-02;KEGG=Os03t0102100-02 (EC:3.5.1.10)
Chr03	irgsp1_rep	five_prime_UTR	144652	144697	.	+	.	Parent=Os03t0102100-02
Chr03	irgsp1_rep	CDS	144698	144778	.	+	0	Parent=Os03t0102100-02
Chr03	irgsp1_rep	CDS	145724	145836	.	+	0	Parent=Os03t0102100-02
Chr03	irgsp1_rep	CDS	146094	146244	.	+	1	Parent=Os03t0102100-02
Chr03	irgsp1_rep	CDS	146398	146471	.	+	0	Parent=Os03t0102100-02
Chr03	irgsp1_rep	CDS	146566	146725	.	+	1	Parent=Os03t0102100-02
Chr03	irgsp1_rep	CDS	147009	147107	.	+	0	Parent=Os03t0102100-02
Chr03	irgsp1_rep	CDS	147185	147271	.	+	0	Parent=Os03t0102100-02
Chr03	irgsp1_rep	CDS	147414	147560	.	+	0	Parent=Os03t0102100-02
Chr03	irgsp1_rep	three_prime_UTR	147561	147750	.	+	.	Parent=Os03t0102100-02
Chr03	irgsp1_rep	mRNA	148195	149009	.	+	.	ID=Os03t0102200-01;Name=Os03t0102200-01;Locus_id=Os03g0102200;Oryzabase Gene Symbol Synonym(s)=SDRP;Oryzabase Gene Name Synonym(s)=similar to DNA-directed RNA polymerase;Note=Similar to DNA-directed RNA polymerase II 14.5 kDa polypeptide (EC 2.7.7.6) (RPB9) (RPB14.5).;Transcript_evidence=AK120183 (DDBJ%2C Best hit);ORF_evidence=Q10T39 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C TFIIS-type (IPR001222),DNA-directed RNA polymerase%2C M/15kDa subunit (IPR001529),DNA-directed RNA polymerase M%2C 15kDa subunit%2C conserved site (IPR019761);NIAS_FLcDNA=J013034D10;Oryzabase=9264;Expression=AK120183;TENOR=Os03t0102200-01;KEGG=Os03t0102200-01 (EC:2.7.7.6)
Chr03	irgsp1_rep	five_prime_UTR	148195	148263	.	+	.	Parent=Os03t0102200-01
Chr03	irgsp1_rep	CDS	148264	148292	.	+	0	Parent=Os03t0102200-01
Chr03	irgsp1_rep	CDS	148371	148446	.	+	1	Parent=Os03t0102200-01
Chr03	irgsp1_rep	CDS	148513	148752	.	+	0	Parent=Os03t0102200-01
Chr03	irgsp1_rep	three_prime_UTR	148753	149009	.	+	.	Parent=Os03t0102200-01
Chr03	irgsp1_rep	mRNA	152781	155316	.	+	.	ID=Os03t0102300-00;Name=Os03t0102300-00;Locus_id=Os03g0102300;Note=Hypothetical conserved gene.;Transcript_evidence=BT068414 (DDBJ);ORF_evidence=Q10T37 (UniProt);TENOR=Os03t0102300-00;KEGG=Os03t0102300-00
Chr03	irgsp1_rep	five_prime_UTR	152781	152793	.	+	.	Parent=Os03t0102300-00
Chr03	irgsp1_rep	CDS	152794	152889	.	+	0	Parent=Os03t0102300-00
Chr03	irgsp1_rep	CDS	153396	153696	.	+	0	Parent=Os03t0102300-00
Chr03	irgsp1_rep	CDS	153778	154001	.	+	2	Parent=Os03t0102300-00
Chr03	irgsp1_rep	CDS	154093	154134	.	+	0	Parent=Os03t0102300-00
Chr03	irgsp1_rep	three_prime_UTR	154135	154426	.	+	.	Parent=Os03t0102300-00
Chr03	irgsp1_rep	three_prime_UTR	154536	154649	.	+	.	Parent=Os03t0102300-00
Chr03	irgsp1_rep	three_prime_UTR	154718	154832	.	+	.	Parent=Os03t0102300-00
Chr03	irgsp1_rep	three_prime_UTR	154946	155122	.	+	.	Parent=Os03t0102300-00
Chr03	irgsp1_rep	three_prime_UTR	155208	155316	.	+	.	Parent=Os03t0102300-00
Chr03	irgsp1_rep	mRNA	161519	163576	.	+	.	ID=Os03t0102333-00;Name=Os03t0102333-00;Locus_id=Os03g0102333;Note=Hypothetical conserved gene.;Transcript_evidence=EU971180 (DDBJ);ORF_evidence=Q10T37 (UniProt);InterPro=CCR4-Not complex%2C Not1 subunit%2C domain of unknown function DUF3819 (IPR024557);TENOR=Os03t0102333-00;KEGG=Os03t0102333-00
Chr03	irgsp1_rep	CDS	161519	161653	.	+	0	Parent=Os03t0102333-00
Chr03	irgsp1_rep	CDS	161729	161857	.	+	0	Parent=Os03t0102333-00
Chr03	irgsp1_rep	CDS	161945	162169	.	+	0	Parent=Os03t0102333-00
Chr03	irgsp1_rep	CDS	162239	162391	.	+	0	Parent=Os03t0102333-00
Chr03	irgsp1_rep	CDS	162570	162655	.	+	0	Parent=Os03t0102333-00
Chr03	irgsp1_rep	CDS	162741	162846	.	+	1	Parent=Os03t0102333-00
Chr03	irgsp1_rep	CDS	162931	163026	.	+	0	Parent=Os03t0102333-00
Chr03	irgsp1_rep	CDS	163412	163576	.	+	0	Parent=Os03t0102333-00
Chr03	irgsp1_rep	mRNA	165459	169983	.	+	.	ID=Os03t0102366-00;Name=Os03t0102366-00;Locus_id=Os03g0102366;Note=Similar to transcriptional regulator-related.;Transcript_evidence=AK362299 (DDBJ);ORF_evidence=NP_171710.3 (RefSeq);InterPro=CCR4-Not complex component%2C Not1%2C C-terminal (IPR007196);TENOR=Os03t0102366-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	165459	165481	.	+	.	Parent=Os03t0102366-00
Chr03	irgsp1_rep	CDS	165482	165628	.	+	0	Parent=Os03t0102366-00
Chr03	irgsp1_rep	CDS	165709	165846	.	+	0	Parent=Os03t0102366-00
Chr03	irgsp1_rep	CDS	166201	166248	.	+	0	Parent=Os03t0102366-00
Chr03	irgsp1_rep	CDS	166343	166489	.	+	0	Parent=Os03t0102366-00
Chr03	irgsp1_rep	CDS	166560	166621	.	+	0	Parent=Os03t0102366-00
Chr03	irgsp1_rep	CDS	167859	168012	.	+	1	Parent=Os03t0102366-00
Chr03	irgsp1_rep	CDS	168107	168298	.	+	0	Parent=Os03t0102366-00
Chr03	irgsp1_rep	CDS	169010	169114	.	+	0	Parent=Os03t0102366-00
Chr03	irgsp1_rep	CDS	169201	169446	.	+	0	Parent=Os03t0102366-00
Chr03	irgsp1_rep	three_prime_UTR	169447	169627	.	+	.	Parent=Os03t0102366-00
Chr03	irgsp1_rep	three_prime_UTR	169723	169824	.	+	.	Parent=Os03t0102366-00
Chr03	irgsp1_rep	three_prime_UTR	169914	169983	.	+	.	Parent=Os03t0102366-00
Chr03	irgsp1_rep	mRNA	169880	175129	.	-	.	ID=Os03t0102400-01;Name=Os03t0102400-01;Locus_id=Os03g0102400;Note=Similar to 2-phosphoglycerate kinase-related.;Transcript_evidence=AK121721 (DDBJ%2C Best hit);ORF_evidence=NP_200953.1 (RefSeq);NIAS_FLcDNA=J033081J24;TENOR=Os03t0102400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	174959	175129	.	-	.	Parent=Os03t0102400-01
Chr03	irgsp1_rep	CDS	174827	174958	.	-	0	Parent=Os03t0102400-01
Chr03	irgsp1_rep	CDS	174545	174730	.	-	0	Parent=Os03t0102400-01
Chr03	irgsp1_rep	CDS	174398	174471	.	-	0	Parent=Os03t0102400-01
Chr03	irgsp1_rep	CDS	174089	174122	.	-	1	Parent=Os03t0102400-01
Chr03	irgsp1_rep	CDS	173886	173944	.	-	0	Parent=Os03t0102400-01
Chr03	irgsp1_rep	CDS	173563	173677	.	-	1	Parent=Os03t0102400-01
Chr03	irgsp1_rep	CDS	173429	173466	.	-	0	Parent=Os03t0102400-01
Chr03	irgsp1_rep	CDS	173238	173335	.	-	1	Parent=Os03t0102400-01
Chr03	irgsp1_rep	CDS	173066	173121	.	-	2	Parent=Os03t0102400-01
Chr03	irgsp1_rep	CDS	172474	172756	.	-	0	Parent=Os03t0102400-01
Chr03	irgsp1_rep	CDS	172075	172190	.	-	2	Parent=Os03t0102400-01
Chr03	irgsp1_rep	CDS	171390	171446	.	-	0	Parent=Os03t0102400-01
Chr03	irgsp1_rep	CDS	170996	171061	.	-	0	Parent=Os03t0102400-01
Chr03	irgsp1_rep	CDS	170653	170727	.	-	0	Parent=Os03t0102400-01
Chr03	irgsp1_rep	CDS	170303	170362	.	-	0	Parent=Os03t0102400-01
Chr03	irgsp1_rep	three_prime_UTR	169880	170302	.	-	.	Parent=Os03t0102400-01
Chr03	irgsp1_rep	mRNA	179190	180206	.	-	.	ID=Os03t0102500-01;Name=Os03t0102500-01;Locus_id=Os03g0102500;CGSNL Gene Symbol=EXPB8;CGSNL Gene Name=BETA-EXPANSIN 8;Note=Similar to Beta-expansin precursor (Fragment).;Transcript_evidence=AK070972 (DDBJ%2C Best hit);ORF_evidence=Q10T32 (UniProt);GO=Biological Process: sexual reproduction (GO:0019953),Cellular Component: extracellular region (GO:0005576);InterPro=Major pollen allergen Lol pI (IPR005795),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);NIAS_FLcDNA=J023069H18;Oryzabase=9340;Expression=AK070972;TENOR=Os03t0102500-01;KEGG=Os03t0102500-01
Chr03	irgsp1_rep	five_prime_UTR	180141	180206	.	-	.	Parent=Os03t0102500-01
Chr03	irgsp1_rep	CDS	179310	180140	.	-	0	Parent=Os03t0102500-01
Chr03	irgsp1_rep	three_prime_UTR	179190	179309	.	-	.	Parent=Os03t0102500-01
Chr03	irgsp1_rep	mRNA	182695	186237	.	+	.	ID=Os03t0102600-01;Name=Os03t0102600-01;Locus_id=Os03g0102600;Note=Conserved hypothetical protein.;Transcript_evidence=AK107487 (DDBJ%2C Best hit);ORF_evidence=B8B0X1 (UniProt);NIAS_FLcDNA=002-129-C10;Expression=AK107487;TENOR=Os03t0102600-01;KEGG=Os03t0102600-01
Chr03	irgsp1_rep	five_prime_UTR	182695	182853	.	+	.	Parent=Os03t0102600-01
Chr03	irgsp1_rep	CDS	182854	183117	.	+	0	Parent=Os03t0102600-01
Chr03	irgsp1_rep	three_prime_UTR	183118	183188	.	+	.	Parent=Os03t0102600-01
Chr03	irgsp1_rep	three_prime_UTR	185943	186237	.	+	.	Parent=Os03t0102600-01
Chr03	irgsp1_rep	mRNA	189695	191268	.	+	.	ID=Os03t0102700-01;Name=Os03t0102700-01;Locus_id=Os03g0102700;CGSNL Gene Symbol=EXPB7;CGSNL Gene Name=BETA-EXPANSIN 7;Oryzabase Gene Symbol Synonym(s)=OsEXPB7%2C osaEXPb1.12;Oryzabase Gene Name Synonym(s)=Expansin-B7%2C Beta-expansin-7;Note=Similar to Expansin-B7.;Transcript_evidence=AK061423 (DDBJ%2C Best hit);ORF_evidence=Q9LD07 (UniProt);GO=Biological Process: sexual reproduction (GO:0019953),Cellular Component: extracellular region (GO:0005576);InterPro=Major pollen allergen Lol pI (IPR005795),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);NIAS_FLcDNA=006-306-G02;Oryzabase=9339;Expression=AK061423;TENOR=Os03t0102700-01;KEGG=Os03t0102700-01
Chr03	irgsp1_rep	five_prime_UTR	189695	189696	.	+	.	Parent=Os03t0102700-01
Chr03	irgsp1_rep	CDS	189697	189996	.	+	0	Parent=Os03t0102700-01
Chr03	irgsp1_rep	CDS	190220	190404	.	+	0	Parent=Os03t0102700-01
Chr03	irgsp1_rep	CDS	190729	191083	.	+	1	Parent=Os03t0102700-01
Chr03	irgsp1_rep	three_prime_UTR	191084	191268	.	+	.	Parent=Os03t0102700-01
Chr03	irgsp1_rep	mRNA	190725	191070	.	-	.	ID=Os03t0102775-00;Name=Os03t0102775-00;Locus_id=Os03g0102775;Note=Hypothetical protein.;Transcript_evidence=EU947703 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0102775-00
Chr03	irgsp1_rep	five_prime_UTR	191069	191070	.	-	.	Parent=Os03t0102775-00
Chr03	irgsp1_rep	CDS	190725	191068	.	-	0	Parent=Os03t0102775-00
Chr03	irgsp1_rep	mRNA	202527	205750	.	+	.	ID=Os03t0103000-01;Name=Os03t0103000-01;Locus_id=Os03g0103000;CGSNL Gene Symbol=NRT1.1C;CGSNL Gene Name=NITRATE TRANSPORTER 1.1C;Oryzabase Gene Symbol Synonym(s)=OsNRT1.1C;Oryzabase Gene Name Synonym(s)=nitrate transporter 1.1C;Note=Similar to Nitrate transporter.;Transcript_evidence=AK241823 (DDBJ%2C Best hit);ORF_evidence=C3SAC2 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),PTR2 family proton/oligopeptide symporter%2C conserved site (IPR018456);NIAS_FLcDNA=J065212G21;Oryzabase=19897;TENOR=Os03t0103000-01;KEGG=Os03t0103000-01
Chr03	irgsp1_rep	five_prime_UTR	202527	202615	.	+	.	Parent=Os03t0103000-01
Chr03	irgsp1_rep	CDS	202616	202999	.	+	0	Parent=Os03t0103000-01
Chr03	irgsp1_rep	CDS	203085	203647	.	+	0	Parent=Os03t0103000-01
Chr03	irgsp1_rep	CDS	204653	205475	.	+	1	Parent=Os03t0103000-01
Chr03	irgsp1_rep	three_prime_UTR	205476	205750	.	+	.	Parent=Os03t0103000-01
Chr03	irgsp1_rep	mRNA	202714	205446	.	-	.	ID=Os03t0103033-00;Name=Os03t0103033-00;Locus_id=Os03g0103033;Note=Hypothetical protein.;Transcript_evidence=tplb0038k08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0103033-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	204666	205446	.	-	.	Parent=Os03t0103033-00
Chr03	irgsp1_rep	CDS	204582	204665	.	-	0	Parent=Os03t0103033-00
Chr03	irgsp1_rep	CDS	203102	203576	.	-	0	Parent=Os03t0103033-00
Chr03	irgsp1_rep	CDS	202714	203016	.	-	2	Parent=Os03t0103033-00
Chr03	irgsp1_rep	mRNA	208340	209118	.	+	.	ID=Os03t0103100-01;Name=Os03t0103100-01;Locus_id=Os03g0103100;Oryzabase Gene Symbol Synonym(s)=OsHyPRP03%2C HyP/GRP03%2C OsHyPRP3%2C HyP/GRP3%2C LTP1;Oryzabase Gene Name Synonym(s)=hybrid proline- or glycine-rich protein 3;Note=Similar to Physical impedance induced protein.;Transcript_evidence=AK103618 (DDBJ%2C Best hit);ORF_evidence=A6N0R3 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=J033133L09;Oryzabase=18605;Expression=AK103618;TENOR=Os03t0103100-01;KEGG=Os03t0103100-01
Chr03	irgsp1_rep	five_prime_UTR	208340	208479	.	+	.	Parent=Os03t0103100-01
Chr03	irgsp1_rep	CDS	208480	208896	.	+	0	Parent=Os03t0103100-01
Chr03	irgsp1_rep	three_prime_UTR	208897	209118	.	+	.	Parent=Os03t0103100-01
Chr03	irgsp1_rep	mRNA	211082	211817	.	+	.	ID=Os03t0103200-01;Name=Os03t0103200-01;Locus_id=Os03g0103200;CGSNL Gene Symbol=HYPRP4;CGSNL Gene Name=HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OsHyPRP04%2C HyP/GRP04%2C OsHyPRP4%2C HyP/GRP4;Oryzabase Gene Name Synonym(s)=hybrid proline- or glycine-rich protein 4%2C Hybrid Proline-Rich Protein 4;Note=Similar to Physical impedance induced protein.;Transcript_evidence=AK062654 (DDBJ%2C Best hit);ORF_evidence=A2XBH3 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=001-105-E10;Oryzabase=18606;Expression=AK062654;TENOR=Os03t0103200-01;KEGG=Os03t0103200-01
Chr03	irgsp1_rep	five_prime_UTR	211082	211177	.	+	.	Parent=Os03t0103200-01
Chr03	irgsp1_rep	CDS	211178	211603	.	+	0	Parent=Os03t0103200-01
Chr03	irgsp1_rep	three_prime_UTR	211604	211817	.	+	.	Parent=Os03t0103200-01
Chr03	irgsp1_rep	mRNA	219979	220919	.	+	.	ID=Os03t0103300-01;Name=Os03t0103300-01;Locus_id=Os03g0103300;RAP-DB Gene Symbol Synonym(s)=qLTG-3-1(t)%2C qLTG-3-1(t)%2C qLTG3-1%2C OsHyPRP05%2C OsHyPRP5%2C HyP/GRP05%2C HyP/GRP5;RAP-DB Gene Name Synonym(s)=low-temperature germianability (QTL)-3-1(t)%2C hybrid proline- or glycine-rich protein 5;CGSNL Gene Symbol=HYPRP5;CGSNL Gene Name=HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 5;Oryzabase Gene Symbol Synonym(s)=qLTG-3-1(t)%2C qLTG3-1%2C OsHyPRP05%2C OsHyPRP5%2C HyP/GRP05%2C HyP/GRP5;Oryzabase Gene Name Synonym(s)=low-temperature germianability (QTL)-3-1(t)%2C hybrid proline- or glycine-rich protein 5%2C Hybrid Proline-Rich Protein 5;Note=Hybrid proline- or glycine-rich protein%2C Controll of low-temperature germinability%2C Pre-harvest sprouting resistance;Transcript_evidence=AB510406,AB433794,AB369214 (Italica Livorno);ORF_evidence=Q10T25;InterPro=Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain (IPR016140),Hydrophobic seed protein (IPR027923);Manual Curation=January 13%2C 2016;Literature_PMID=18719107,20145904,20960223,25309566;Oryzabase=2930;TENOR=Os03t0103300-00
Chr03	irgsp1_rep	five_prime_UTR	219979	220066	.	+	.	Parent=Os03t0103300-01
Chr03	irgsp1_rep	CDS	220067	220621	.	+	0	Parent=Os03t0103300-01
Chr03	irgsp1_rep	three_prime_UTR	220622	220919	.	+	.	Parent=Os03t0103300-01
Chr03	irgsp1_rep	mRNA	235340	238039	.	+	.	ID=Os03t0103400-01;Name=Os03t0103400-01;Locus_id=Os03g0103400;Note=GRAS transcription factor domain containing protein.;Transcript_evidence=AK119324 (DDBJ%2C Best hit);ORF_evidence=B8ALG3 (UniProt);InterPro=Transcription factor GRAS (IPR005202);NIAS_FLcDNA=001-131-A10;Expression=AK119324;TENOR=Os03t0103400-01;KEGG=Os03t0103400-01
Chr03	irgsp1_rep	five_prime_UTR	235340	235370	.	+	.	Parent=Os03t0103400-01
Chr03	irgsp1_rep	CDS	235371	236795	.	+	0	Parent=Os03t0103400-01
Chr03	irgsp1_rep	three_prime_UTR	236796	238039	.	+	.	Parent=Os03t0103400-01
Chr03	irgsp1_rep	mRNA	254279	255121	.	-	.	ID=Os03t0103600-00;Name=Os03t0103600-00;Locus_id=Os03g0103600;Note=Hypothetical conserved gene.;Transcript_evidence=AK111357 (DDBJ%2C Secondary hit);ORF_evidence=Q6YXA4 (UniProt);Expression=AK111357;TENOR=Os03t0103600-00;KEGG=Os03t0103600-00
Chr03	irgsp1_rep	five_prime_UTR	255092	255121	.	-	.	Parent=Os03t0103600-00
Chr03	irgsp1_rep	CDS	254911	255091	.	-	0	Parent=Os03t0103600-00
Chr03	irgsp1_rep	CDS	254563	254804	.	-	2	Parent=Os03t0103600-00
Chr03	irgsp1_rep	three_prime_UTR	254425	254562	.	-	.	Parent=Os03t0103600-00
Chr03	irgsp1_rep	three_prime_UTR	254279	254372	.	-	.	Parent=Os03t0103600-00
Chr03	irgsp1_rep	mRNA	262997	264249	.	+	.	ID=Os03t0103700-01;Name=Os03t0103700-01;Locus_id=Os03g0103700;Note=Non-protein coding transcript.;Transcript_evidence=AK060917 (DDBJ%2C Best hit),AK102555 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-035-G08,J033097F14;TENOR=Os03t0103700-01
Chr03	irgsp1_rep	exon	262997	263785	.	+	.	Parent=Os03t0103700-01
Chr03	irgsp1_rep	exon	263872	264249	.	+	.	Parent=Os03t0103700-01
Chr03	irgsp1_rep	mRNA	263054	264452	.	+	.	ID=Os03t0103700-02;Name=Os03t0103700-02;Locus_id=Os03g0103700;Note=Non-protein coding transcript.;Transcript_evidence=AK103900 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J033150K03;TENOR=Os03t0103700-02
Chr03	irgsp1_rep	exon	263054	263785	.	+	.	Parent=Os03t0103700-02
Chr03	irgsp1_rep	exon	263872	264452	.	+	.	Parent=Os03t0103700-02
Chr03	irgsp1_rep	mRNA	268645	272800	.	+	.	ID=Os03t0103800-01;Name=Os03t0103800-01;Locus_id=Os03g0103800;Note=Conserved hypothetical protein.;Transcript_evidence=AK065499 (DDBJ%2C Best hit);ORF_evidence=NP_001048670.1 (RefSeq);NIAS_FLcDNA=J013023N14;TENOR=Os03t0103800-01;KEGG=Os03t0103800-01
Chr03	irgsp1_rep	five_prime_UTR	268645	269358	.	+	.	Parent=Os03t0103800-01
Chr03	irgsp1_rep	five_prime_UTR	269444	269497	.	+	.	Parent=Os03t0103800-01
Chr03	irgsp1_rep	CDS	269498	269568	.	+	0	Parent=Os03t0103800-01
Chr03	irgsp1_rep	CDS	271169	272207	.	+	1	Parent=Os03t0103800-01
Chr03	irgsp1_rep	three_prime_UTR	272208	272214	.	+	.	Parent=Os03t0103800-01
Chr03	irgsp1_rep	three_prime_UTR	272302	272800	.	+	.	Parent=Os03t0103800-01
Chr03	irgsp1_rep	mRNA	269993	270893	.	+	.	ID=Os03t0103900-01;Name=Os03t0103900-01;Locus_id=Os03g0103900;Note=Conserved hypothetical protein.;Transcript_evidence=AK107972 (DDBJ%2C Best hit);ORF_evidence=B8AG65 (UniProt);NIAS_FLcDNA=002-135-D08;TENOR=Os03t0103900-01;KEGG=Os03t0103900-01
Chr03	irgsp1_rep	CDS	269993	270328	.	+	0	Parent=Os03t0103900-01
Chr03	irgsp1_rep	three_prime_UTR	270329	270893	.	+	.	Parent=Os03t0103900-01
Chr03	irgsp1_rep	mRNA	272404	274368	.	-	.	ID=Os03t0103950-00;Name=Os03t0103950-00;Locus_id=Os03g0103950;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FAA7 (UniProt);InterPro=KIP1-like (IPR011684);TENOR=Os03t0103950-00;KEGG=Os03t0103950-00
Chr03	irgsp1_rep	CDS	272404	274368	.	-	0	Parent=Os03t0103950-00
Chr03	irgsp1_rep	mRNA	274345	274762	.	+	.	ID=Os03t0104000-01;Name=Os03t0104000-01;Locus_id=Os03g0104000;Note=Similar to Viral A-type inclusion protein repeat containing protein%2C expressed.;Transcript_evidence=AK063829 (DDBJ%2C Best hit);ORF_evidence=Q10RF6 (UniProt);InterPro=KIP1-like (IPR011684);NIAS_FLcDNA=001-122-A12;TENOR=Os03t0104000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	274345	274401	.	+	.	Parent=Os03t0104000-01
Chr03	irgsp1_rep	CDS	274402	274572	.	+	0	Parent=Os03t0104000-01
Chr03	irgsp1_rep	three_prime_UTR	274573	274762	.	+	.	Parent=Os03t0104000-01
Chr03	irgsp1_rep	mRNA	276806	278906	.	-	.	ID=Os03t0104100-01;Name=Os03t0104100-01;Locus_id=Os03g0104100;Note=Protein phosphatase 2C%2C N-terminal domain containing protein.;Transcript_evidence=AK099959 (DDBJ%2C Best hit);ORF_evidence=B9F5U1 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J013126F07;Expression=AK099959;TENOR=Os03t0104100-01;KEGG=Os03t0104100-01
Chr03	irgsp1_rep	five_prime_UTR	277677	278906	.	-	.	Parent=Os03t0104100-01
Chr03	irgsp1_rep	CDS	277428	277676	.	-	0	Parent=Os03t0104100-01
Chr03	irgsp1_rep	three_prime_UTR	277374	277427	.	-	.	Parent=Os03t0104100-01
Chr03	irgsp1_rep	three_prime_UTR	276806	277255	.	-	.	Parent=Os03t0104100-01
Chr03	irgsp1_rep	mRNA	295731	297898	.	-	.	ID=Os03t0104400-01;Name=Os03t0104400-01;Locus_id=Os03g0104400;Note=Protein of unknown function DUF1677%2C Oryza sativa domain containing protein.;Transcript_evidence=AK061759 (DDBJ%2C Best hit);ORF_evidence=B8ALG5 (UniProt);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);NIAS_FLcDNA=001-039-A11;TENOR=Os03t0104400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	297821	297898	.	-	.	Parent=Os03t0104400-01
Chr03	irgsp1_rep	five_prime_UTR	297601	297659	.	-	.	Parent=Os03t0104400-01
Chr03	irgsp1_rep	five_prime_UTR	297387	297452	.	-	.	Parent=Os03t0104400-01
Chr03	irgsp1_rep	five_prime_UTR	297229	297287	.	-	.	Parent=Os03t0104400-01
Chr03	irgsp1_rep	five_prime_UTR	297090	297110	.	-	.	Parent=Os03t0104400-01
Chr03	irgsp1_rep	CDS	295884	297089	.	-	0	Parent=Os03t0104400-01
Chr03	irgsp1_rep	three_prime_UTR	295731	295883	.	-	.	Parent=Os03t0104400-01
Chr03	irgsp1_rep	mRNA	295403	297895	.	-	.	ID=Os03t0104400-02;Name=Os03t0104400-02;Locus_id=Os03g0104400;Note=Protein of unknown function DUF1677%2C Oryza sativa domain containing protein.;Transcript_evidence=AK121821 (DDBJ%2C Best hit);ORF_evidence=B8ALG5 (UniProt);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);NIAS_FLcDNA=J033099C23;TENOR=Os03t0104400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	297821	297895	.	-	.	Parent=Os03t0104400-02
Chr03	irgsp1_rep	five_prime_UTR	297601	297648	.	-	.	Parent=Os03t0104400-02
Chr03	irgsp1_rep	five_prime_UTR	297387	297452	.	-	.	Parent=Os03t0104400-02
Chr03	irgsp1_rep	five_prime_UTR	297229	297287	.	-	.	Parent=Os03t0104400-02
Chr03	irgsp1_rep	five_prime_UTR	297090	297110	.	-	.	Parent=Os03t0104400-02
Chr03	irgsp1_rep	CDS	295884	297089	.	-	0	Parent=Os03t0104400-02
Chr03	irgsp1_rep	three_prime_UTR	295403	295883	.	-	.	Parent=Os03t0104400-02
Chr03	irgsp1_rep	mRNA	305896	308455	.	-	.	ID=Os03t0104800-01;Name=Os03t0104800-01;Locus_id=Os03g0104800;Note=Hypothetical conserved gene.;Transcript_evidence=AK102558 (DDBJ%2C Best hit);ORF_evidence=B9FAB2 (UniProt);NIAS_FLcDNA=J033097H14;Expression=AK102558;TENOR=Os03t0104800-01;KEGG=Os03t0104800-01
Chr03	irgsp1_rep	five_prime_UTR	307860	308455	.	-	.	Parent=Os03t0104800-01
Chr03	irgsp1_rep	CDS	307656	307859	.	-	0	Parent=Os03t0104800-01
Chr03	irgsp1_rep	three_prime_UTR	305896	307655	.	-	.	Parent=Os03t0104800-01
Chr03	irgsp1_rep	mRNA	309311	314505	.	-	.	ID=Os03t0104901-01;Name=Os03t0104901-01;Locus_id=Os03g0104901;Note=Conserved hypothetical protein.;Transcript_evidence=AK241723 (DDBJ%2C Best hit);ORF_evidence=Q6K3C4 (UniProt);NIAS_FLcDNA=J065198L04;TENOR=Os03t0104901-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	313455	314505	.	-	.	Parent=Os03t0104901-01
Chr03	irgsp1_rep	five_prime_UTR	313213	313340	.	-	.	Parent=Os03t0104901-01
Chr03	irgsp1_rep	five_prime_UTR	310591	310903	.	-	.	Parent=Os03t0104901-01
Chr03	irgsp1_rep	CDS	310285	310590	.	-	0	Parent=Os03t0104901-01
Chr03	irgsp1_rep	three_prime_UTR	309956	310284	.	-	.	Parent=Os03t0104901-01
Chr03	irgsp1_rep	three_prime_UTR	309781	309880	.	-	.	Parent=Os03t0104901-01
Chr03	irgsp1_rep	three_prime_UTR	309311	309700	.	-	.	Parent=Os03t0104901-01
Chr03	irgsp1_rep	mRNA	313806	315321	.	+	.	ID=Os03t0105000-01;Name=Os03t0105000-01;Locus_id=Os03g0105000;Note=Hypothetical protein.;Transcript_evidence=AK119918 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-183-G02;Expression=AK119918;TENOR=Os03t0105000-01;KEGG=Os03t0105000-01
Chr03	irgsp1_rep	five_prime_UTR	313806	313989	.	+	.	Parent=Os03t0105000-01
Chr03	irgsp1_rep	CDS	313990	314499	.	+	0	Parent=Os03t0105000-01
Chr03	irgsp1_rep	three_prime_UTR	314500	315321	.	+	.	Parent=Os03t0105000-01
Chr03	irgsp1_rep	mRNA	321593	323939	.	+	.	ID=Os03t0105300-01;Name=Os03t0105300-01;Locus_id=Os03g0105300;Note=Protein of unknown function DUF1677%2C Oryza sativa domain containing protein.;Transcript_evidence=AK070700 (DDBJ%2C Best hit);ORF_evidence=B8ALG5 (UniProt);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);NIAS_FLcDNA=J023057F15;TENOR=Os03t0105300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	321593	321670	.	+	.	Parent=Os03t0105300-01
Chr03	irgsp1_rep	five_prime_UTR	321782	321890	.	+	.	Parent=Os03t0105300-01
Chr03	irgsp1_rep	five_prime_UTR	322039	322104	.	+	.	Parent=Os03t0105300-01
Chr03	irgsp1_rep	five_prime_UTR	322204	322262	.	+	.	Parent=Os03t0105300-01
Chr03	irgsp1_rep	five_prime_UTR	322381	322401	.	+	.	Parent=Os03t0105300-01
Chr03	irgsp1_rep	CDS	322402	323643	.	+	0	Parent=Os03t0105300-01
Chr03	irgsp1_rep	three_prime_UTR	323644	323939	.	+	.	Parent=Os03t0105300-01
Chr03	irgsp1_rep	mRNA	321593	324469	.	+	.	ID=Os03t0105300-02;Name=Os03t0105300-02;Locus_id=Os03g0105300;Note=Protein of unknown function DUF1677%2C Oryza sativa domain containing protein.;Transcript_evidence=AK069535 (DDBJ%2C Best hit),AK059147 (DDBJ%2C Best hit);ORF_evidence=B8ALG5 (UniProt);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);NIAS_FLcDNA=J023019L20,001-023-B02;TENOR=Os03t0105300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	321593	321670	.	+	.	Parent=Os03t0105300-02
Chr03	irgsp1_rep	five_prime_UTR	321832	321890	.	+	.	Parent=Os03t0105300-02
Chr03	irgsp1_rep	five_prime_UTR	322039	322104	.	+	.	Parent=Os03t0105300-02
Chr03	irgsp1_rep	five_prime_UTR	322204	322262	.	+	.	Parent=Os03t0105300-02
Chr03	irgsp1_rep	five_prime_UTR	322381	322401	.	+	.	Parent=Os03t0105300-02
Chr03	irgsp1_rep	CDS	322402	323643	.	+	0	Parent=Os03t0105300-02
Chr03	irgsp1_rep	three_prime_UTR	323644	324469	.	+	.	Parent=Os03t0105300-02
Chr03	irgsp1_rep	mRNA	324659	337243	.	+	.	ID=Os03t0105401-00;Name=Os03t0105401-00;Locus_id=Os03g0105401;Note=Hypothetical gene.;Transcript_evidence=CT835198 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os03t0105401-00;KEGG=Os03t0105401-00
Chr03	irgsp1_rep	five_prime_UTR	324659	324831	.	+	.	Parent=Os03t0105401-00
Chr03	irgsp1_rep	five_prime_UTR	335446	335742	.	+	.	Parent=Os03t0105401-00
Chr03	irgsp1_rep	five_prime_UTR	335845	335979	.	+	.	Parent=Os03t0105401-00
Chr03	irgsp1_rep	five_prime_UTR	336650	336656	.	+	.	Parent=Os03t0105401-00
Chr03	irgsp1_rep	CDS	336657	336869	.	+	0	Parent=Os03t0105401-00
Chr03	irgsp1_rep	CDS	336972	337178	.	+	0	Parent=Os03t0105401-00
Chr03	irgsp1_rep	three_prime_UTR	337179	337243	.	+	.	Parent=Os03t0105401-00
Chr03	irgsp1_rep	mRNA	337912	339291	.	-	.	ID=Os03t0105500-01;Name=Os03t0105500-01;Locus_id=Os03g0105500;Note=Conserved hypothetical protein.;Transcript_evidence=AK241474 (DDBJ%2C Best hit);ORF_evidence=Q6YWI6 (UniProt);NIAS_FLcDNA=J065165I19;Oryzabase=22554;TENOR=Os03t0105500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	338745	339291	.	-	.	Parent=Os03t0105500-01
Chr03	irgsp1_rep	CDS	338364	338744	.	-	0	Parent=Os03t0105500-01
Chr03	irgsp1_rep	three_prime_UTR	338225	338363	.	-	.	Parent=Os03t0105500-01
Chr03	irgsp1_rep	three_prime_UTR	337912	338132	.	-	.	Parent=Os03t0105500-01
Chr03	irgsp1_rep	mRNA	339986	341757	.	+	.	ID=Os03t0105600-01;Name=Os03t0105600-01;Locus_id=Os03g0105600;CGSNL Gene Symbol=TUB2;CGSNL Gene Name=BETA-TUBULIN 2;Oryzabase Gene Symbol Synonym(s)=OsTUB2%2C TUBB2;Oryzabase Gene Name Synonym(s)=beta tubulin 2%2C Tubulin beta-2 chain%2C Beta-2-tubulin;Note=Tubulin beta-1 chain (Beta-1 tubulin).;Transcript_evidence=AK243618 (DDBJ%2C Best hit);ORF_evidence=Q8H7U1 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: microtubule-based process (GO:0007017),Biological Process: microtubule-based movement (GO:0007018),Biological Process: protein polymerization (GO:0051258),Cellular Component: microtubule (GO:0005874),Cellular Component: protein complex (GO:0043234),Molecular Function: GTPase activity (GO:0003924),Molecular Function: structural molecule activity (GO:0005198),Molecular Function: GTP binding (GO:0005525);InterPro=Tubulin (IPR000217),Beta tubulin (IPR002453),Tubulin/FtsZ%2C GTPase domain (IPR003008),Tubulin/FtsZ%2C C-terminal (IPR008280),Beta tubulin%2C autoregulation binding site (IPR013838),Tubulin%2C conserved site (IPR017975),Tubulin/FtsZ%2C 2-layer sandwich domain (IPR018316),Tubulin%2C C-terminal (IPR023123);NIAS_FLcDNA=J100085O15;Oryzabase=2957;TENOR=Os03t0105600-01;KEGG=Os03t0105600-01
Chr03	irgsp1_rep	five_prime_UTR	339986	340086	.	+	.	Parent=Os03t0105600-01
Chr03	irgsp1_rep	CDS	340087	340480	.	+	0	Parent=Os03t0105600-01
Chr03	irgsp1_rep	CDS	340557	341506	.	+	2	Parent=Os03t0105600-01
Chr03	irgsp1_rep	three_prime_UTR	341507	341757	.	+	.	Parent=Os03t0105600-01
Chr03	irgsp1_rep	mRNA	340081	341505	.	-	.	ID=Os03t0105633-00;Name=Os03t0105633-00;Locus_id=Os03g0105633;Note=Hypothetical protein.;Transcript_evidence=tplb0045b10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0105633-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	341504	341505	.	-	.	Parent=Os03t0105633-00
Chr03	irgsp1_rep	CDS	340574	341503	.	-	0	Parent=Os03t0105633-00
Chr03	irgsp1_rep	CDS	340485	340496	.	-	0	Parent=Os03t0105633-00
Chr03	irgsp1_rep	three_prime_UTR	340081	340484	.	-	.	Parent=Os03t0105633-00
Chr03	irgsp1_rep	mRNA	344309	347004	.	-	.	ID=Os03t0105700-01;Name=Os03t0105700-01;Locus_id=Os03g0105700;Note=Protein of unknown function DUF296 domain containing protein.;Transcript_evidence=AK100031 (DDBJ%2C Best hit);ORF_evidence=B8ALG7 (UniProt);InterPro=Domain of unknown function DUF296 (IPR005175);NIAS_FLcDNA=J013148F02;Expression=AK100031;TENOR=Os03t0105700-01;KEGG=Os03t0105700-01
Chr03	irgsp1_rep	five_prime_UTR	346902	347004	.	-	.	Parent=Os03t0105700-01
Chr03	irgsp1_rep	CDS	346619	346901	.	-	0	Parent=Os03t0105700-01
Chr03	irgsp1_rep	CDS	346482	346537	.	-	2	Parent=Os03t0105700-01
Chr03	irgsp1_rep	CDS	345710	345835	.	-	0	Parent=Os03t0105700-01
Chr03	irgsp1_rep	CDS	345040	345183	.	-	0	Parent=Os03t0105700-01
Chr03	irgsp1_rep	CDS	344648	344935	.	-	0	Parent=Os03t0105700-01
Chr03	irgsp1_rep	three_prime_UTR	344309	344647	.	-	.	Parent=Os03t0105700-01
Chr03	irgsp1_rep	mRNA	348433	352290	.	-	.	ID=Os03t0105800-01;Name=Os03t0105800-01;Locus_id=Os03g0105800;Note=Hypothetical conserved gene.;Transcript_evidence=AK066875 (DDBJ%2C Best hit);ORF_evidence=Q8H7U0 (UniProt);InterPro=Protein of unknown function DUF3527 (IPR021916);NIAS_FLcDNA=J013082I15;Expression=AK066875;TENOR=Os03t0105800-01;KEGG=Os03t0105800-01
Chr03	irgsp1_rep	five_prime_UTR	352172	352290	.	-	.	Parent=Os03t0105800-01
Chr03	irgsp1_rep	five_prime_UTR	351443	351451	.	-	.	Parent=Os03t0105800-01
Chr03	irgsp1_rep	CDS	349439	351442	.	-	0	Parent=Os03t0105800-01
Chr03	irgsp1_rep	three_prime_UTR	348433	349438	.	-	.	Parent=Os03t0105800-01
Chr03	irgsp1_rep	mRNA	348432	350466	.	-	.	ID=Os03t0105800-02;Name=Os03t0105800-02;Locus_id=Os03g0105800;Note=Similar to cDNA clone:J013082I15%2C full insert sequence.;Transcript_evidence=AK064249 (DDBJ%2C Best hit);ORF_evidence=B9FAB7 (UniProt);InterPro=Protein of unknown function DUF3527 (IPR021916);NIAS_FLcDNA=002-105-C03;Expression=AK064249;TENOR=Os03t0105800-02;KEGG=Os03t0105800-02
Chr03	irgsp1_rep	five_prime_UTR	350465	350466	.	-	.	Parent=Os03t0105800-02
Chr03	irgsp1_rep	CDS	349559	350464	.	-	0	Parent=Os03t0105800-02
Chr03	irgsp1_rep	CDS	348746	349075	.	-	0	Parent=Os03t0105800-02
Chr03	irgsp1_rep	three_prime_UTR	348432	348745	.	-	.	Parent=Os03t0105800-02
Chr03	irgsp1_rep	mRNA	356871	359717	.	-	.	ID=Os03t0106000-01;Name=Os03t0106000-01;Locus_id=Os03g0106000;Note=Uncharacterised protein family UPF0187 domain containing protein.;Transcript_evidence=AK063343 (DDBJ%2C Best hit);ORF_evidence=A2XBI8 (UniProt);InterPro=Bestrophin/UPF0187 (IPR021134);NIAS_FLcDNA=001-114-B03;Expression=AK063343;TENOR=Os03t0106000-01;KEGG=Os03t0106000-01
Chr03	irgsp1_rep	five_prime_UTR	359629	359717	.	-	.	Parent=Os03t0106000-01
Chr03	irgsp1_rep	CDS	359032	359628	.	-	0	Parent=Os03t0106000-01
Chr03	irgsp1_rep	CDS	358617	358784	.	-	0	Parent=Os03t0106000-01
Chr03	irgsp1_rep	CDS	358135	358341	.	-	0	Parent=Os03t0106000-01
Chr03	irgsp1_rep	CDS	357301	357510	.	-	0	Parent=Os03t0106000-01
Chr03	irgsp1_rep	three_prime_UTR	356871	357300	.	-	.	Parent=Os03t0106000-01
Chr03	irgsp1_rep	mRNA	360500	366714	.	+	.	ID=Os03t0106100-01;Name=Os03t0106100-01;Locus_id=Os03g0106100;Note=Non-protein coding transcript.;Transcript_evidence=AK101204 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J033030O08;TENOR=Os03t0106100-01
Chr03	irgsp1_rep	exon	360500	360657	.	+	.	Parent=Os03t0106100-01
Chr03	irgsp1_rep	exon	364334	366383	.	+	.	Parent=Os03t0106100-01
Chr03	irgsp1_rep	exon	366471	366714	.	+	.	Parent=Os03t0106100-01
Chr03	irgsp1_rep	mRNA	361705	367014	.	-	.	ID=Os03t0106200-01;Name=Os03t0106200-01;Locus_id=Os03g0106200;Note=Conserved hypothetical protein.;Transcript_evidence=AK120128 (DDBJ%2C Best hit);ORF_evidence=A2XBI9 (UniProt);NIAS_FLcDNA=J013026G14;Expression=AK120128;TENOR=Os03t0106200-01;KEGG=Os03t0106200-01
Chr03	irgsp1_rep	five_prime_UTR	366742	367014	.	-	.	Parent=Os03t0106200-01
Chr03	irgsp1_rep	five_prime_UTR	366384	366494	.	-	.	Parent=Os03t0106200-01
Chr03	irgsp1_rep	CDS	366233	366383	.	-	0	Parent=Os03t0106200-01
Chr03	irgsp1_rep	CDS	365650	365711	.	-	2	Parent=Os03t0106200-01
Chr03	irgsp1_rep	CDS	363383	364910	.	-	0	Parent=Os03t0106200-01
Chr03	irgsp1_rep	CDS	363201	363304	.	-	2	Parent=Os03t0106200-01
Chr03	irgsp1_rep	CDS	362869	363118	.	-	0	Parent=Os03t0106200-01
Chr03	irgsp1_rep	CDS	362219	362763	.	-	2	Parent=Os03t0106200-01
Chr03	irgsp1_rep	three_prime_UTR	361705	362218	.	-	.	Parent=Os03t0106200-01
Chr03	irgsp1_rep	mRNA	362194	363303	.	+	.	ID=Os03t0106250-00;Name=Os03t0106250-00;Locus_id=Os03g0106250;Note=Non-protein coding transcript.;Transcript_evidence=EU948014 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0106250-00
Chr03	irgsp1_rep	exon	362194	363303	.	+	.	Parent=Os03t0106250-00
Chr03	irgsp1_rep	mRNA	370325	374690	.	-	.	ID=Os03t0106300-01;Name=Os03t0106300-01;Locus_id=Os03g0106300;RAP-DB Gene Symbol Synonym(s)=PAIR1%2C Pair1;RAP-DB Gene Name Synonym(s)=HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 1%2C HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS1%2C Homologous pairing aberration in rice meiosis 1%2C Protein PAIR1%2C Protein HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 1;CGSNL Gene Symbol=PAIR1;CGSNL Gene Name=HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 1;Oryzabase Gene Symbol Synonym(s)=Pair1;Oryzabase Gene Name Synonym(s)=HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS1%2C Homologous pairing aberration in rice meiosis 1%2C Protein PAIR1%2C Protein HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 1;Note=Coiled-coil protein%2C Homologous Chromosome pairing in meiosis;Transcript_evidence=AB158462;ORF_evidence=Q75RY2,Q10SZ9;Manual Curation=January 25%2C 2010;Literature_PMID=15031413;Oryzabase=2985;Expression=AB158462;TENOR=Os03t0106300-00;KEGG=Os03t0106300-01
Chr03	irgsp1_rep	five_prime_UTR	374595	374690	.	-	.	Parent=Os03t0106300-01
Chr03	irgsp1_rep	CDS	374536	374594	.	-	0	Parent=Os03t0106300-01
Chr03	irgsp1_rep	CDS	374257	374464	.	-	1	Parent=Os03t0106300-01
Chr03	irgsp1_rep	CDS	373422	373572	.	-	0	Parent=Os03t0106300-01
Chr03	irgsp1_rep	CDS	373012	373152	.	-	2	Parent=Os03t0106300-01
Chr03	irgsp1_rep	CDS	372833	372885	.	-	2	Parent=Os03t0106300-01
Chr03	irgsp1_rep	CDS	372438	372737	.	-	0	Parent=Os03t0106300-01
Chr03	irgsp1_rep	CDS	371970	372029	.	-	0	Parent=Os03t0106300-01
Chr03	irgsp1_rep	CDS	371748	371887	.	-	0	Parent=Os03t0106300-01
Chr03	irgsp1_rep	CDS	371168	371342	.	-	1	Parent=Os03t0106300-01
Chr03	irgsp1_rep	CDS	370856	370934	.	-	0	Parent=Os03t0106300-01
Chr03	irgsp1_rep	CDS	370455	370567	.	-	2	Parent=Os03t0106300-01
Chr03	irgsp1_rep	three_prime_UTR	370325	370454	.	-	.	Parent=Os03t0106300-01
Chr03	irgsp1_rep	mRNA	371160	374461	.	+	.	ID=Os03t0106350-00;Name=Os03t0106350-00;Locus_id=Os03g0106350;Note=Hypothetical protein.;Transcript_evidence=tplb0041c13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0106350-00
Chr03	irgsp1_rep	five_prime_UTR	371160	371364	.	+	.	Parent=Os03t0106350-00
Chr03	irgsp1_rep	five_prime_UTR	371615	371955	.	+	.	Parent=Os03t0106350-00
Chr03	irgsp1_rep	CDS	371956	372079	.	+	0	Parent=Os03t0106350-00
Chr03	irgsp1_rep	CDS	372588	372718	.	+	2	Parent=Os03t0106350-00
Chr03	irgsp1_rep	three_prime_UTR	372719	372739	.	+	.	Parent=Os03t0106350-00
Chr03	irgsp1_rep	three_prime_UTR	372972	373139	.	+	.	Parent=Os03t0106350-00
Chr03	irgsp1_rep	three_prime_UTR	373415	373574	.	+	.	Parent=Os03t0106350-00
Chr03	irgsp1_rep	three_prime_UTR	374277	374461	.	+	.	Parent=Os03t0106350-00
Chr03	irgsp1_rep	mRNA	375321	379793	.	-	.	ID=Os03t0106400-01;Name=Os03t0106400-01;Locus_id=Os03g0106400;Note=Similar to Branched-chain-amino-acid aminotransferase 5%2C chloroplast precursor (EC 2.6.1.42) (Atbcat-5).;Transcript_evidence=AK108687 (DDBJ%2C Best hit);ORF_evidence=A2XBJ1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: branched chain family amino acid metabolic process (GO:0009081),Molecular Function: catalytic activity (GO:0003824),Molecular Function: branched-chain-amino-acid transaminase activity (GO:0004084);InterPro=Aminotransferase%2C class IV (IPR001544),Branched-chain amino acid aminotransferase II (IPR005786),Aminotransferase%2C class IV%2C conserved site (IPR018300);NIAS_FLcDNA=002-149-C06;Expression=AK108687;TENOR=Os03t0106400-01;KEGG=Os03t0106400-01 (EC:2.6.1.42)
Chr03	irgsp1_rep	five_prime_UTR	379735	379793	.	-	.	Parent=Os03t0106400-01
Chr03	irgsp1_rep	CDS	379636	379734	.	-	0	Parent=Os03t0106400-01
Chr03	irgsp1_rep	CDS	378880	378968	.	-	0	Parent=Os03t0106400-01
Chr03	irgsp1_rep	CDS	378604	378778	.	-	1	Parent=Os03t0106400-01
Chr03	irgsp1_rep	CDS	378306	378482	.	-	0	Parent=Os03t0106400-01
Chr03	irgsp1_rep	CDS	378071	378202	.	-	0	Parent=Os03t0106400-01
Chr03	irgsp1_rep	CDS	377726	377824	.	-	0	Parent=Os03t0106400-01
Chr03	irgsp1_rep	CDS	377061	377177	.	-	0	Parent=Os03t0106400-01
Chr03	irgsp1_rep	CDS	376689	376784	.	-	0	Parent=Os03t0106400-01
Chr03	irgsp1_rep	CDS	376273	376385	.	-	0	Parent=Os03t0106400-01
Chr03	irgsp1_rep	CDS	375516	375636	.	-	1	Parent=Os03t0106400-01
Chr03	irgsp1_rep	three_prime_UTR	375321	375515	.	-	.	Parent=Os03t0106400-01
Chr03	irgsp1_rep	mRNA	386875	388037	.	+	.	ID=Os03t0106500-01;Name=Os03t0106500-01;Locus_id=Os03g0106500;CGSNL Gene Symbol=EXPB1A;CGSNL Gene Name=BETA-EXPANSIN 1A;Oryzabase Gene Symbol Synonym(s)=OsEXPB1%2C EXPB1a%2C OsaEXPb1.2%2C Ory s I%2C EXPB1.1%2C Ory s 1;Oryzabase Gene Name Synonym(s)=Major pollen allergen Ory s 1%2C Expansin-B1%2C Beta-expansin-1%2C Expansin-B1A%2C Beta-expansin-1A;Note=Beta-expansin precursor (Beta-expansin 1).;Transcript_evidence=AK072792 (DDBJ%2C Best hit);ORF_evidence=Q40638 (UniProt);GO=Biological Process: sexual reproduction (GO:0019953),Cellular Component: extracellular region (GO:0005576);InterPro=Major pollen allergen Lol pI (IPR005795),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);NIAS_FLcDNA=J023142P17;Oryzabase=14331;Expression=AK072792;TENOR=Os03t0106500-01;KEGG=Os03t0106500-01
Chr03	irgsp1_rep	five_prime_UTR	386875	386907	.	+	.	Parent=Os03t0106500-01
Chr03	irgsp1_rep	CDS	386908	387711	.	+	0	Parent=Os03t0106500-01
Chr03	irgsp1_rep	three_prime_UTR	387712	388037	.	+	.	Parent=Os03t0106500-01
Chr03	irgsp1_rep	mRNA	388271	388906	.	+	.	ID=Os03t0106550-01;Name=Os03t0106550-01;Locus_id=Os03g0106550;Note=Conserved hypothetical protein.;Transcript_evidence=AK242483 (DDBJ%2C Best hit);ORF_evidence=Q2QXF3 (UniProt);NIAS_FLcDNA=J080305D09;TENOR=Os03t0106550-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	388271	388610	.	+	.	Parent=Os03t0106550-01
Chr03	irgsp1_rep	CDS	388611	388841	.	+	0	Parent=Os03t0106550-01
Chr03	irgsp1_rep	three_prime_UTR	388842	388906	.	+	.	Parent=Os03t0106550-01
Chr03	irgsp1_rep	mRNA	391571	392374	.	+	.	ID=Os03t0106700-00;Name=Os03t0106700-00;Locus_id=Os03g0106700;CGSNL Gene Symbol=EXPB13;CGSNL Gene Name=BETA-EXPANSIN 13;Oryzabase Gene Symbol Synonym(s)=OsEXPB13%2C osaEXPb1.4p;Oryzabase Gene Name Synonym(s)=Expansin-B13%2C Beta-expansin-13;Note=Expansin-B13.;Transcript_evidence=Q946J4 (UniProt);ORF_evidence=Q946J4 (UniProt);GO=Biological Process: sexual reproduction (GO:0019953),Cellular Component: extracellular region (GO:0005576);InterPro=Major pollen allergen Lol pI (IPR005795),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);Oryzabase=9345;TENOR=Os03t0106700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	391571	392012	.	+	0	Parent=Os03t0106700-00
Chr03	irgsp1_rep	CDS	392130	392374	.	+	2	Parent=Os03t0106700-00
Chr03	irgsp1_rep	mRNA	397341	398440	.	+	.	ID=Os03t0106800-01;Name=Os03t0106800-01;Locus_id=Os03g0106800;CGSNL Gene Symbol=EXPB10;CGSNL Gene Name=BETA-EXPANSIN 10;Oryzabase Gene Symbol Synonym(s)=OsEXPB10%2C osaEXPb1.5;Oryzabase Gene Name Synonym(s)=Expansin-B10%2C Beta-expansin-10;Note=Beta-expansin precursor (Beta-expansin OsEXPB10).;Transcript_evidence=AK069853 (DDBJ%2C Best hit);ORF_evidence=Q8H7T4 (UniProt);GO=Biological Process: sexual reproduction (GO:0019953),Cellular Component: extracellular region (GO:0005576);InterPro=Major pollen allergen Lol pI (IPR005795),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);NIAS_FLcDNA=J023036C07;Oryzabase=9342;Expression=AK069853;TENOR=Os03t0106800-01;KEGG=Os03t0106800-01
Chr03	irgsp1_rep	five_prime_UTR	397341	397374	.	+	.	Parent=Os03t0106800-01
Chr03	irgsp1_rep	CDS	397375	398178	.	+	0	Parent=Os03t0106800-01
Chr03	irgsp1_rep	three_prime_UTR	398179	398440	.	+	.	Parent=Os03t0106800-01
Chr03	irgsp1_rep	mRNA	400210	400500	.	-	.	ID=Os03t0106850-00;Name=Os03t0106850-00;Locus_id=Os03g0106850;Note=Hypothetical protein.;Transcript_evidence=EU946393 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0106850-00
Chr03	irgsp1_rep	CDS	400210	400500	.	-	0	Parent=Os03t0106850-00
Chr03	irgsp1_rep	mRNA	401132	402293	.	-	.	ID=Os03t0106900-00;Name=Os03t0106900-00;Locus_id=Os03g0106900;CGSNL Gene Symbol=EXPB1B;CGSNL Gene Name=BETA-EXPANSIN 1B;Oryzabase Gene Symbol Synonym(s)=OsEXPB1%2C EXPB1b%2C OsaEXPb1.3%2C Ory s I%2C EXPB1.1;Oryzabase Gene Name Synonym(s)=Expansin-B1%2C Beta-expansin-1%2C Major pollen allergen Ory s 1;Note=Beta-expansin precursor (Beta-expansin 1).;Transcript_evidence=AK072792 (DDBJ%2C Secondary hit);ORF_evidence=Q40638 (UniProt);GO=Biological Process: sexual reproduction (GO:0019953),Cellular Component: extracellular region (GO:0005576);InterPro=Major pollen allergen Lol pI (IPR005795),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);Oryzabase=6138;Expression=AK072792;TENOR=Os03t0106900-00;KEGG=Os03t0106900-00
Chr03	irgsp1_rep	five_prime_UTR	402261	402293	.	-	.	Parent=Os03t0106900-00
Chr03	irgsp1_rep	CDS	401457	402260	.	-	0	Parent=Os03t0106900-00
Chr03	irgsp1_rep	three_prime_UTR	401132	401456	.	-	.	Parent=Os03t0106900-00
Chr03	irgsp1_rep	mRNA	405715	410103	.	-	.	ID=Os03t0107000-01;Name=Os03t0107000-01;Locus_id=Os03g0107000;Note=Similar to ASK20.;Transcript_evidence=AK242173 (DDBJ%2C Best hit);ORF_evidence=B6SWY8 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);InterPro=SKP1 component (IPR001232),BTB/POZ fold (IPR011333),SKP1 component%2C dimerisation (IPR016072),SKP1 component%2C POZ (IPR016073);NIAS_FLcDNA=J075158G19;TENOR=Os03t0107000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	409954	410103	.	-	.	Parent=Os03t0107000-01
Chr03	irgsp1_rep	five_prime_UTR	408768	409014	.	-	.	Parent=Os03t0107000-01
Chr03	irgsp1_rep	CDS	408732	408767	.	-	0	Parent=Os03t0107000-01
Chr03	irgsp1_rep	CDS	408384	408608	.	-	0	Parent=Os03t0107000-01
Chr03	irgsp1_rep	CDS	407820	408011	.	-	0	Parent=Os03t0107000-01
Chr03	irgsp1_rep	CDS	407638	407748	.	-	0	Parent=Os03t0107000-01
Chr03	irgsp1_rep	CDS	407320	407478	.	-	0	Parent=Os03t0107000-01
Chr03	irgsp1_rep	three_prime_UTR	407034	407319	.	-	.	Parent=Os03t0107000-01
Chr03	irgsp1_rep	three_prime_UTR	406799	406956	.	-	.	Parent=Os03t0107000-01
Chr03	irgsp1_rep	three_prime_UTR	406304	406425	.	-	.	Parent=Os03t0107000-01
Chr03	irgsp1_rep	three_prime_UTR	405715	406115	.	-	.	Parent=Os03t0107000-01
Chr03	irgsp1_rep	mRNA	411801	414456	.	+	.	ID=Os03t0107100-00;Name=Os03t0107100-00;Locus_id=Os03g0107100;Note=Hypothetical conserved gene.;Transcript_evidence=EU947968 (DDBJ);ORF_evidence=NP_001173229.1 (RefSeq);GO=Biological Process: ATP catabolic process (GO:0006200),Biological Process: ATP biosynthetic process (GO:0006754),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATPase activity (GO:0016887),Molecular Function: metal ion binding (GO:0046872);InterPro=ATPase%2C P-type%2C plasma-membrane proton-efflux (IPR006534),ATPase%2C P-type%2C ATPase-associated domain (IPR008250),ATPase%2C  P-type%2C cytoplasmic transduction domain A (IPR023300);TENOR=Os03t0107100-00;KEGG=Os03t0107100-00 (EC:3.6.3.6)
Chr03	irgsp1_rep	CDS	411801	411941	.	+	0	Parent=Os03t0107100-00
Chr03	irgsp1_rep	CDS	413338	414456	.	+	0	Parent=Os03t0107100-00
Chr03	irgsp1_rep	mRNA	430697	432874	.	-	.	ID=Os03t0107300-01;Name=Os03t0107300-01;Locus_id=Os03g0107300;RAP-DB Gene Symbol Synonym(s)=LSI2%2C Lsi2%2C SIET1%2C OsLsi2;RAP-DB Gene Name Synonym(s)=LOW SILICON RICE 2%2C low silicon 2%2C silicon efflux transporter 1%2C Si efflux transporter 1%2C Si/arsenite efflux transporter Lsi2;CGSNL Gene Symbol=LSI2;CGSNL Gene Name=LOW SILICON RICE 2;Oryzabase Gene Symbol Synonym(s)=Lsi2%2C SIET1%2C OsLsi2;Oryzabase Gene Name Synonym(s)=low silicon 2%2C silicon efflux transporter 1%2C Si efflux transporter 1%2C Si/arsenite efflux transporter Lsi2;Note=Anion transporter%2C Silicon efflux transporter%2C Arsenic species (As) uptake;Transcript_evidence=AB222273 (Genbank);ORF_evidence=Q10SY9 (UniProt);GO=Biological Process: citrate transport (GO:0015746),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: citrate transmembrane transporter activity (GO:0015137);InterPro=Divalent ion symporter (IPR004680);NIAS_FLcDNA=J033024M24;Manual Curation=September 15%2C 2009;Literature_PMID=18626020,19542298;Oryzabase=7156;Expression=AK101092;TENOR=Os03t0107300-01;KEGG=Os03t0107300-01
Chr03	irgsp1_rep	five_prime_UTR	432726	432874	.	-	.	Parent=Os03t0107300-01
Chr03	irgsp1_rep	CDS	431576	432725	.	-	0	Parent=Os03t0107300-01
Chr03	irgsp1_rep	CDS	431212	431480	.	-	2	Parent=Os03t0107300-01
Chr03	irgsp1_rep	three_prime_UTR	430697	431211	.	-	.	Parent=Os03t0107300-01
Chr03	irgsp1_rep	mRNA	440341	445008	.	+	.	ID=Os03t0107400-01;Name=Os03t0107400-01;Locus_id=Os03g0107400;Note=Prefoldin domain containing protein.;Transcript_evidence=AK063431 (DDBJ%2C Best hit);ORF_evidence=Q8H7Q9 (UniProt);NIAS_FLcDNA=001-115-D10;TENOR=Os03t0107400-01
Chr03	irgsp1_rep	five_prime_UTR	440341	440611	.	+	.	Parent=Os03t0107400-01
Chr03	irgsp1_rep	CDS	440612	440695	.	+	0	Parent=Os03t0107400-01
Chr03	irgsp1_rep	CDS	441254	441451	.	+	0	Parent=Os03t0107400-01
Chr03	irgsp1_rep	CDS	441573	441695	.	+	0	Parent=Os03t0107400-01
Chr03	irgsp1_rep	CDS	441827	441864	.	+	0	Parent=Os03t0107400-01
Chr03	irgsp1_rep	CDS	441989	442157	.	+	1	Parent=Os03t0107400-01
Chr03	irgsp1_rep	CDS	442770	445008	.	+	0	Parent=Os03t0107400-01
Chr03	irgsp1_rep	mRNA	457359	459318	.	+	.	ID=Os03t0107500-00;Name=Os03t0107500-00;Locus_id=Os03g0107500;Oryzabase Gene Symbol Synonym(s)=OsRFP;Oryzabase Gene Name Synonym(s)=RING finger protein;Note=Conserved hypothetical protein.;Transcript_evidence=AK335352 (DDBJ);ORF_evidence=B9FAC7 (UniProt);Oryzabase=21163;TENOR=Os03t0107500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	457359	457758	.	+	0	Parent=Os03t0107500-00
Chr03	irgsp1_rep	CDS	458292	458524	.	+	2	Parent=Os03t0107500-00
Chr03	irgsp1_rep	CDS	458662	459126	.	+	0	Parent=Os03t0107500-00
Chr03	irgsp1_rep	three_prime_UTR	459127	459318	.	+	.	Parent=Os03t0107500-00
Chr03	irgsp1_rep	mRNA	465197	467860	.	+	.	ID=Os03t0107600-01;Name=Os03t0107600-01;Locus_id=Os03g0107600;Note=Similar to H0716A07.6 protein.;Transcript_evidence=AK101392 (DDBJ%2C Best hit);ORF_evidence=Q01MR7 (UniProt);InterPro=Domain of unknown function DUF1990 (IPR018960);NIAS_FLcDNA=J033036L21;Expression=AK101392;TENOR=Os03t0107600-01;KEGG=Os03t0107600-01
Chr03	irgsp1_rep	five_prime_UTR	465197	466602	.	+	.	Parent=Os03t0107600-01
Chr03	irgsp1_rep	CDS	466603	466958	.	+	0	Parent=Os03t0107600-01
Chr03	irgsp1_rep	CDS	467035	467245	.	+	1	Parent=Os03t0107600-01
Chr03	irgsp1_rep	CDS	467392	467589	.	+	0	Parent=Os03t0107600-01
Chr03	irgsp1_rep	three_prime_UTR	467590	467860	.	+	.	Parent=Os03t0107600-01
Chr03	irgsp1_rep	mRNA	465247	468002	.	+	.	ID=Os03t0107600-02;Name=Os03t0107600-02;Locus_id=Os03g0107600;Note=Similar to H0716A07.6 protein.;Transcript_evidence=AK289104 (DDBJ%2C Best hit);ORF_evidence=Q01MR7 (UniProt);InterPro=Domain of unknown function DUF1990 (IPR018960);NIAS_FLcDNA=J090096G16;TENOR=Os03t0107600-02;KEGG=Os03t0107600-02
Chr03	irgsp1_rep	five_prime_UTR	465247	465561	.	+	.	Parent=Os03t0107600-02
Chr03	irgsp1_rep	CDS	465562	465608	.	+	0	Parent=Os03t0107600-02
Chr03	irgsp1_rep	CDS	466680	466958	.	+	1	Parent=Os03t0107600-02
Chr03	irgsp1_rep	CDS	467035	467245	.	+	1	Parent=Os03t0107600-02
Chr03	irgsp1_rep	CDS	467392	467589	.	+	0	Parent=Os03t0107600-02
Chr03	irgsp1_rep	three_prime_UTR	467590	468002	.	+	.	Parent=Os03t0107600-02
Chr03	irgsp1_rep	mRNA	466048	467852	.	+	.	ID=Os03t0107600-03;Name=Os03t0107600-03;Locus_id=Os03g0107600;Note=Similar to H0716A07.6 protein.;Transcript_evidence=AK071651 (DDBJ%2C Best hit);ORF_evidence=Q01MR7 (UniProt);InterPro=Domain of unknown function DUF1990 (IPR018960);NIAS_FLcDNA=J023107C13;Expression=AK071651;TENOR=Os03t0107600-03;KEGG=Os03t0107600-03
Chr03	irgsp1_rep	five_prime_UTR	466048	466187	.	+	.	Parent=Os03t0107600-03
Chr03	irgsp1_rep	five_prime_UTR	466680	466689	.	+	.	Parent=Os03t0107600-03
Chr03	irgsp1_rep	CDS	466690	466958	.	+	0	Parent=Os03t0107600-03
Chr03	irgsp1_rep	CDS	467035	467245	.	+	1	Parent=Os03t0107600-03
Chr03	irgsp1_rep	CDS	467392	467589	.	+	0	Parent=Os03t0107600-03
Chr03	irgsp1_rep	three_prime_UTR	467590	467852	.	+	.	Parent=Os03t0107600-03
Chr03	irgsp1_rep	mRNA	470350	471075	.	+	.	ID=Os03t0107700-01;Name=Os03t0107700-01;Locus_id=Os03g0107700;CGSNL Gene Symbol=EL2;CGSNL Gene Name=D-TYPE CYCLIN-INTERACTING PROTEIN;Oryzabase Gene Symbol Synonym(s)=Orysa%3B EL2;Note=Similar to EL2 protein.;Transcript_evidence=AK063743 (DDBJ%2C Best hit);ORF_evidence=P93406 (UniProt);NIAS_FLcDNA=001-120-F10;Oryzabase=7155;Expression=AK063743;TENOR=Os03t0107700-01;KEGG=Os03t0107700-01
Chr03	irgsp1_rep	five_prime_UTR	470350	470392	.	+	.	Parent=Os03t0107700-01
Chr03	irgsp1_rep	CDS	470393	470713	.	+	0	Parent=Os03t0107700-01
Chr03	irgsp1_rep	three_prime_UTR	470714	471075	.	+	.	Parent=Os03t0107700-01
Chr03	irgsp1_rep	mRNA	471470	476645	.	-	.	ID=Os03t0107800-01;Name=Os03t0107800-01;Locus_id=Os03g0107800;RAP-DB Gene Symbol Synonym(s)=OsSEX4;RAP-DB Gene Name Synonym(s)=Starch Excess 4;CGSNL Gene Symbol=SEX4;CGSNL Gene Name=STARCH EXCESS 4;Oryzabase Gene Symbol Synonym(s)=OsPP42%2C PP42%2C OsSEX4;Oryzabase Gene Name Synonym(s)=Protein phosphatase 42%2C Starch Excess 4;Note=Homolog of Arabidopsis SEX4 encoding glucan phosphatase%2C Degradation of transitory starch;Transcript_evidence=AK062666 (truncated),Inferred from literature;ORF_evidence=Q10SY1;GO=Biological Process: protein dephosphorylation (GO:0006470),Biological Process: dephosphorylation (GO:0016311),Molecular Function: protein tyrosine/serine/threonine phosphatase activity (GO:0008138),Molecular Function: phosphatase activity (GO:0016791);InterPro=Protein-tyrosine phosphatase-like (IPR029021),Immunoglobulin-like fold (IPR013783),Immunoglobulin E-set (IPR014756),Tyrosine specific protein phosphatases domain (IPR000387),Dual specificity protein phosphatase domain (IPR020422),Dual specificity phosphatase%2C catalytic domain (IPR000340),AMP-activated protein kinase%2C glycogen-binding domain (IPR032640);NIAS_FLcDNA=001-105-F11 (truncated);Manual Curation=January 17%2C 2020;Literature_PMID=31889302;Oryzabase=18635;Expression=AK062666;TENOR=Os03t0107800-01;KEGG=Os03t0107800-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	476529	476645	.	-	.	Parent=Os03t0107800-01
Chr03	irgsp1_rep	CDS	476503	476528	.	-	0	Parent=Os03t0107800-01
Chr03	irgsp1_rep	CDS	476335	476389	.	-	1	Parent=Os03t0107800-01
Chr03	irgsp1_rep	CDS	476185	476229	.	-	0	Parent=Os03t0107800-01
Chr03	irgsp1_rep	CDS	475920	476022	.	-	0	Parent=Os03t0107800-01
Chr03	irgsp1_rep	CDS	475107	475183	.	-	2	Parent=Os03t0107800-01
Chr03	irgsp1_rep	CDS	474942	475018	.	-	0	Parent=Os03t0107800-01
Chr03	irgsp1_rep	CDS	474395	474475	.	-	1	Parent=Os03t0107800-01
Chr03	irgsp1_rep	CDS	473930	474062	.	-	1	Parent=Os03t0107800-01
Chr03	irgsp1_rep	CDS	473441	473500	.	-	0	Parent=Os03t0107800-01
Chr03	irgsp1_rep	CDS	473150	473206	.	-	0	Parent=Os03t0107800-01
Chr03	irgsp1_rep	CDS	472936	473031	.	-	0	Parent=Os03t0107800-01
Chr03	irgsp1_rep	CDS	472676	472735	.	-	0	Parent=Os03t0107800-01
Chr03	irgsp1_rep	CDS	472195	472302	.	-	0	Parent=Os03t0107800-01
Chr03	irgsp1_rep	CDS	471984	472112	.	-	0	Parent=Os03t0107800-01
Chr03	irgsp1_rep	three_prime_UTR	471982	471983	.	-	.	Parent=Os03t0107800-01
Chr03	irgsp1_rep	three_prime_UTR	471470	471877	.	-	.	Parent=Os03t0107800-01
Chr03	irgsp1_rep	mRNA	471514	472248	.	-	.	ID=Os03t0107800-02;Name=Os03t0107800-02;Locus_id=Os03g0107800;CGSNL Gene Symbol=SEX4;CGSNL Gene Name=STARCH EXCESS 4;Oryzabase Gene Symbol Synonym(s)=OsPP42%2C PP42%2C OsSEX4;Oryzabase Gene Name Synonym(s)=Protein phosphatase 42%2C Starch Excess 4;Note=Hypothetical conserved gene.;Transcript_evidence=AK063074 (DDBJ%2C Best hit);ORF_evidence=Q10SY1 (UniProt);NIAS_FLcDNA=001-110-H07;Oryzabase=18635;Expression=AK063074;TENOR=Os03t0107800-02;KEGG=Os03t0107800-02
Chr03	irgsp1_rep	CDS	472195	472248	.	-	0	Parent=Os03t0107800-02
Chr03	irgsp1_rep	CDS	471984	472112	.	-	0	Parent=Os03t0107800-02
Chr03	irgsp1_rep	three_prime_UTR	471982	471983	.	-	.	Parent=Os03t0107800-02
Chr03	irgsp1_rep	three_prime_UTR	471514	471831	.	-	.	Parent=Os03t0107800-02
Chr03	irgsp1_rep	mRNA	479276	479848	.	-	.	ID=Os03t0107850-00;Name=Os03t0107850-00;Locus_id=Os03g0107850;Note=Hypothetical gene.;Transcript_evidence=EU948437 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0107850-00;KEGG=Os03t0107850-00
Chr03	irgsp1_rep	five_prime_UTR	479841	479848	.	-	.	Parent=Os03t0107850-00
Chr03	irgsp1_rep	CDS	479319	479840	.	-	0	Parent=Os03t0107850-00
Chr03	irgsp1_rep	three_prime_UTR	479276	479318	.	-	.	Parent=Os03t0107850-00
Chr03	irgsp1_rep	mRNA	479277	481986	.	+	.	ID=Os03t0107900-01;Name=Os03t0107900-01;Locus_id=Os03g0107900;Note=Exostosin-like family protein.;Transcript_evidence=AK109533 (DDBJ%2C Best hit);ORF_evidence=XP_002872025.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);NIAS_FLcDNA=002-119-A02;Expression=AK109533;TENOR=Os03t0107900-01;KEGG=Os03t0107900-01
Chr03	irgsp1_rep	CDS	479277	479846	.	+	0	Parent=Os03t0107900-01
Chr03	irgsp1_rep	CDS	480389	480633	.	+	0	Parent=Os03t0107900-01
Chr03	irgsp1_rep	CDS	481048	481516	.	+	1	Parent=Os03t0107900-01
Chr03	irgsp1_rep	three_prime_UTR	481517	481986	.	+	.	Parent=Os03t0107900-01
Chr03	irgsp1_rep	mRNA	482938	484739	.	-	.	ID=Os03t0108000-01;Name=Os03t0108000-01;Locus_id=Os03g0108000;RAP-DB Gene Symbol Synonym(s)=ACR2.2%2C CDC25.2%2C OsACR2.2%2C OsStr21%2C STR21;RAP-DB Gene Name Synonym(s)=ARSENATE REDUCTASE 2%2C Sulfurtransferase 21;CGSNL Gene Symbol=ACR2.2;CGSNL Gene Name=ARSENATE REDUCTASE 2;Oryzabase Gene Symbol Synonym(s)=CDC25.2%2C OsACR2.2%2C OsStr21%2C STR21;Oryzabase Gene Name Synonym(s)=Sulfurtransferase 21;Note=Dual-specificity tyrosine-phosphatase CDC25%2C Arsenic metabolism;Transcript_evidence=AY860058 (Genbank),AK102520 (Genbank);ORF_evidence=Q10SX6 (UniProt);InterPro=Rhodanese-like (IPR001763);NIAS_FLcDNA=J033095O09;Manual Curation=September 18%2C 2009;Literature_PMID=17388894;Oryzabase=8096;TENOR=Os03t0108000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	484690	484739	.	-	.	Parent=Os03t0108000-01
Chr03	irgsp1_rep	CDS	484607	484689	.	-	0	Parent=Os03t0108000-01
Chr03	irgsp1_rep	CDS	484387	484525	.	-	1	Parent=Os03t0108000-01
Chr03	irgsp1_rep	CDS	483181	483351	.	-	0	Parent=Os03t0108000-01
Chr03	irgsp1_rep	three_prime_UTR	482938	483180	.	-	.	Parent=Os03t0108000-01
Chr03	irgsp1_rep	mRNA	488306	491916	.	+	.	ID=Os03t0108200-00;Name=Os03t0108200-00;Locus_id=Os03g0108200;Note=Similar to Transposon protein.;Transcript_evidence=FP098774 (DDBJ);ORF_evidence=B6UFQ4 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);TENOR=Os03t0108200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	488306	488802	.	+	0	Parent=Os03t0108200-00
Chr03	irgsp1_rep	CDS	488975	489053	.	+	1	Parent=Os03t0108200-00
Chr03	irgsp1_rep	CDS	489156	489245	.	+	0	Parent=Os03t0108200-00
Chr03	irgsp1_rep	CDS	489324	489368	.	+	0	Parent=Os03t0108200-00
Chr03	irgsp1_rep	CDS	489621	489701	.	+	0	Parent=Os03t0108200-00
Chr03	irgsp1_rep	three_prime_UTR	489702	489714	.	+	.	Parent=Os03t0108200-00
Chr03	irgsp1_rep	three_prime_UTR	489791	489889	.	+	.	Parent=Os03t0108200-00
Chr03	irgsp1_rep	three_prime_UTR	490665	490775	.	+	.	Parent=Os03t0108200-00
Chr03	irgsp1_rep	three_prime_UTR	490880	491013	.	+	.	Parent=Os03t0108200-00
Chr03	irgsp1_rep	three_prime_UTR	491093	491132	.	+	.	Parent=Os03t0108200-00
Chr03	irgsp1_rep	three_prime_UTR	491445	491504	.	+	.	Parent=Os03t0108200-00
Chr03	irgsp1_rep	three_prime_UTR	491589	491916	.	+	.	Parent=Os03t0108200-00
Chr03	irgsp1_rep	mRNA	492815	494095	.	-	.	ID=Os03t0108300-01;Name=Os03t0108300-01;Locus_id=Os03g0108300;CGSNL Gene Symbol=XTH19;CGSNL Gene Name=XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 19;Oryzabase Gene Symbol Synonym(s)=OsXTH19;Oryzabase Gene Name Synonym(s)=xyloglucan endotransglucosylase/hydrolase%2C xyloglucan endotransglucosylase 19%2C xyloglucan endotransglucosylase/hydrolase 19;Note=Similar to xyloglucan endotransglucosylase/hydrolase protein 32.;Transcript_evidence=AK119538 (DDBJ%2C Best hit);ORF_evidence=C5IG70 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 16 (IPR000757),Concanavalin A-like lectin/glucanase (IPR008985),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320);NIAS_FLcDNA=001-204-C03;Oryzabase=6499;Expression=AK119538;TENOR=Os03t0108300-01;KEGG=Os03t0108300-01 (EC:2.4.1.207)
Chr03	irgsp1_rep	five_prime_UTR	494019	494095	.	-	.	Parent=Os03t0108300-01
Chr03	irgsp1_rep	CDS	493575	494018	.	-	0	Parent=Os03t0108300-01
Chr03	irgsp1_rep	three_prime_UTR	492815	493574	.	-	.	Parent=Os03t0108300-01
Chr03	irgsp1_rep	mRNA	492815	494093	.	-	.	ID=Os03t0108300-02;Name=Os03t0108300-02;Locus_id=Os03g0108300;RAP-DB Gene Symbol Synonym(s)=OsXTH19;RAP-DB Gene Name Synonym(s)=xyloglucan endotransglucosylase/hydrolase 19;CGSNL Gene Symbol=XTH19;CGSNL Gene Name=XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 19;Oryzabase Gene Symbol Synonym(s)=OsXTH19;Oryzabase Gene Name Synonym(s)=xyloglucan endotransglucosylase/hydrolase%2C xyloglucan endotransglucosylase 19%2C xyloglucan endotransglucosylase/hydrolase 19;Note=Xyloglucan endotransglucosylase/hydrolase%2C Regulation of growth and development;Transcript_evidence=AK061126,AK104060;ORF_evidence=Q10SX3;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: cellular glucan metabolic process (GO:0006073),Biological Process: xyloglucan metabolic process (GO:0010411),Biological Process: cell wall biogenesis (GO:0042546),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762),Cellular Component: cell wall (GO:0005618),Cellular Component: apoplast (GO:0048046);InterPro=Concanavalin A-like lectin/glucanase domain superfamily (IPR013320),Xyloglucan endotransglucosylase/hydrolase (IPR016455),Glycoside hydrolase family 16 (IPR000757),Xyloglucan endo-transglycosylase%2C C-terminal (IPR010713);NIAS_FLcDNA=006-207-G12,001-024-G01;Manual Curation=July 26%2C 2019;Literature_PMID=24363334,14988479;Oryzabase=6499;Expression=AK061126;TENOR=Os03t0108300-02
Chr03	irgsp1_rep	five_prime_UTR	494019	494093	.	-	.	Parent=Os03t0108300-02
Chr03	irgsp1_rep	CDS	493668	494018	.	-	0	Parent=Os03t0108300-02
Chr03	irgsp1_rep	CDS	492993	493574	.	-	0	Parent=Os03t0108300-02
Chr03	irgsp1_rep	three_prime_UTR	492815	492992	.	-	.	Parent=Os03t0108300-02
Chr03	irgsp1_rep	mRNA	497751	499662	.	+	.	ID=Os03t0108400-01;Name=Os03t0108400-01;Locus_id=Os03g0108400;Note=Similar to Charged multivesicular body protein 3.;Transcript_evidence=AK242193 (DDBJ%2C Best hit);ORF_evidence=B6SM72 (UniProt);GO=Biological Process: protein transport (GO:0015031);InterPro=Snf7 (IPR005024);NIAS_FLcDNA=J075164A12;TENOR=Os03t0108400-01;KEGG=Os03t0108400-01
Chr03	irgsp1_rep	five_prime_UTR	497751	497826	.	+	.	Parent=Os03t0108400-01
Chr03	irgsp1_rep	CDS	497827	497938	.	+	0	Parent=Os03t0108400-01
Chr03	irgsp1_rep	CDS	498028	498104	.	+	2	Parent=Os03t0108400-01
Chr03	irgsp1_rep	CDS	498187	498289	.	+	0	Parent=Os03t0108400-01
Chr03	irgsp1_rep	CDS	498744	498865	.	+	2	Parent=Os03t0108400-01
Chr03	irgsp1_rep	CDS	498958	499152	.	+	0	Parent=Os03t0108400-01
Chr03	irgsp1_rep	CDS	499282	499368	.	+	0	Parent=Os03t0108400-01
Chr03	irgsp1_rep	three_prime_UTR	499369	499662	.	+	.	Parent=Os03t0108400-01
Chr03	irgsp1_rep	mRNA	499919	501855	.	-	.	ID=Os03t0108500-01;Name=Os03t0108500-01;Locus_id=Os03g0108500;CGSNL Gene Symbol=FAH2;CGSNL Gene Name=FATTY ACID HYDROXYLASE 2;Oryzabase Gene Symbol Synonym(s)=OsFAH2;Oryzabase Gene Name Synonym(s)=fatty acid hydroxylase 2;Note=Similar to 4%2C4-dimethyl-sterol C4-methyl-oxidase (Fragment).;Transcript_evidence=AK108704 (DDBJ%2C Best hit);ORF_evidence=B4FN64 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Fatty acid hydroxylase (IPR006694);NIAS_FLcDNA=002-150-A02;Oryzabase=23406;Expression=AK108704;TENOR=Os03t0108500-01;KEGG=Os03t0108500-01 (EC:1.14.13.72)
Chr03	irgsp1_rep	five_prime_UTR	501728	501855	.	-	.	Parent=Os03t0108500-01
Chr03	irgsp1_rep	CDS	501078	501727	.	-	0	Parent=Os03t0108500-01
Chr03	irgsp1_rep	CDS	500608	500755	.	-	1	Parent=Os03t0108500-01
Chr03	irgsp1_rep	CDS	500457	500489	.	-	0	Parent=Os03t0108500-01
Chr03	irgsp1_rep	CDS	500164	500235	.	-	0	Parent=Os03t0108500-01
Chr03	irgsp1_rep	three_prime_UTR	499919	500163	.	-	.	Parent=Os03t0108500-01
Chr03	irgsp1_rep	mRNA	505922	509002	.	+	.	ID=Os03t0108600-01;Name=Os03t0108600-01;Locus_id=Os03g0108600;RAP-DB Gene Symbol Synonym(s)=TCD33%2C OsBIRH1;RAP-DB Gene Name Synonym(s)=thermo-sensitive chlorophyll-deficient%2C BTH-induced RNA helicase 1;Oryzabase Gene Symbol Synonym(s)=OsRH50%2C OsBIRH1;Oryzabase Gene Name Synonym(s)=RNA helicase 50%2C BTH-induced RNA helicase 1;Note=DEAD-box RNA helicase%2C Early chloroplast development under cold stress%2C Cold tolerance%2C Defence responses against biotic and abiotic stresses;Transcript_evidence=AK065776;ORF_evidence=Q0DVX2;GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: ATP binding (GO:0005524);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014),Helicase superfamily 1/2%2C ATP-binding domain (IPR014001),DEAD/DEAH box helicase domain (IPR011545),Helicase%2C C-terminal (IPR001650);NIAS_FLcDNA=J013038N14;Manual Curation=April 1%2C 2020;Literature_PMID=32213379,18441339;Oryzabase=19156;TENOR=Os03t0108600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=chloroplast (GO:0009507)
Chr03	irgsp1_rep	five_prime_UTR	505922	505959	.	+	.	Parent=Os03t0108600-01
Chr03	irgsp1_rep	CDS	505960	506272	.	+	0	Parent=Os03t0108600-01
Chr03	irgsp1_rep	CDS	506574	507061	.	+	2	Parent=Os03t0108600-01
Chr03	irgsp1_rep	CDS	507263	507457	.	+	0	Parent=Os03t0108600-01
Chr03	irgsp1_rep	CDS	507560	507747	.	+	0	Parent=Os03t0108600-01
Chr03	irgsp1_rep	CDS	507840	508053	.	+	1	Parent=Os03t0108600-01
Chr03	irgsp1_rep	CDS	508150	508281	.	+	0	Parent=Os03t0108600-01
Chr03	irgsp1_rep	CDS	508376	508548	.	+	0	Parent=Os03t0108600-01
Chr03	irgsp1_rep	CDS	508637	508859	.	+	1	Parent=Os03t0108600-01
Chr03	irgsp1_rep	three_prime_UTR	508860	509002	.	+	.	Parent=Os03t0108600-01
Chr03	irgsp1_rep	mRNA	508894	510314	.	-	.	ID=Os03t0108700-01;Name=Os03t0108700-01;Locus_id=Os03g0108700;Note=Conserved hypothetical protein.;Transcript_evidence=AK105115 (DDBJ%2C Best hit);ORF_evidence=Q8H7P7 (UniProt);NIAS_FLcDNA=001-100-H07;Expression=AK105115;TENOR=Os03t0108700-01;KEGG=Os03t0108700-01
Chr03	irgsp1_rep	five_prime_UTR	510285	510314	.	-	.	Parent=Os03t0108700-01
Chr03	irgsp1_rep	CDS	510225	510284	.	-	0	Parent=Os03t0108700-01
Chr03	irgsp1_rep	CDS	509617	509850	.	-	0	Parent=Os03t0108700-01
Chr03	irgsp1_rep	CDS	509461	509534	.	-	0	Parent=Os03t0108700-01
Chr03	irgsp1_rep	CDS	509215	509356	.	-	1	Parent=Os03t0108700-01
Chr03	irgsp1_rep	three_prime_UTR	508894	509214	.	-	.	Parent=Os03t0108700-01
Chr03	irgsp1_rep	mRNA	510643	514759	.	+	.	ID=Os03t0108800-01;Name=Os03t0108800-01;Locus_id=Os03g0108800;Oryzabase Gene Name Synonym(s)=CDKA%3B1 homolog;Note=Similar to Cyclin-dependent kinase A-1.;Transcript_evidence=AK065932 (DDBJ%2C Best hit);ORF_evidence=P29618 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013045E13;Oryzabase=20364;TENOR=Os03t0108800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	510643	510916	.	+	.	Parent=Os03t0108800-01
Chr03	irgsp1_rep	CDS	510917	510999	.	+	0	Parent=Os03t0108800-01
Chr03	irgsp1_rep	CDS	511424	511700	.	+	1	Parent=Os03t0108800-01
Chr03	irgsp1_rep	CDS	511776	511957	.	+	0	Parent=Os03t0108800-01
Chr03	irgsp1_rep	CDS	512206	512326	.	+	1	Parent=Os03t0108800-01
Chr03	irgsp1_rep	CDS	513709	513720	.	+	0	Parent=Os03t0108800-01
Chr03	irgsp1_rep	three_prime_UTR	513721	513761	.	+	.	Parent=Os03t0108800-01
Chr03	irgsp1_rep	three_prime_UTR	513901	514064	.	+	.	Parent=Os03t0108800-01
Chr03	irgsp1_rep	three_prime_UTR	514161	514248	.	+	.	Parent=Os03t0108800-01
Chr03	irgsp1_rep	three_prime_UTR	514342	514395	.	+	.	Parent=Os03t0108800-01
Chr03	irgsp1_rep	three_prime_UTR	514492	514759	.	+	.	Parent=Os03t0108800-01
Chr03	irgsp1_rep	mRNA	511890	514744	.	-	.	ID=Os03t0108932-00;Name=Os03t0108932-00;Locus_id=Os03g0108932;Note=Non-protein coding transcript.;Transcript_evidence=BT016935 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0108932-00
Chr03	irgsp1_rep	exon	514486	514744	.	-	.	Parent=Os03t0108932-00
Chr03	irgsp1_rep	exon	514166	514288	.	-	.	Parent=Os03t0108932-00
Chr03	irgsp1_rep	exon	513909	514067	.	-	.	Parent=Os03t0108932-00
Chr03	irgsp1_rep	exon	513569	513764	.	-	.	Parent=Os03t0108932-00
Chr03	irgsp1_rep	exon	512211	512315	.	-	.	Parent=Os03t0108932-00
Chr03	irgsp1_rep	exon	511890	511960	.	-	.	Parent=Os03t0108932-00
Chr03	irgsp1_rep	mRNA	524008	525278	.	+	.	ID=Os03t0109000-01;Name=Os03t0109000-01;Locus_id=Os03g0109000;CGSNL Gene Symbol=NAC55;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 55;Oryzabase Gene Symbol Synonym(s)=ONAC055%2C ONAC55;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 055%2C NAC domain-containing protein 55;Note=Similar to NAC domain protein.;Transcript_evidence=AK070416 (DDBJ%2C Best hit);ORF_evidence=D8UUZ6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=J023051N16;Oryzabase=11488;Expression=AK070416;TENOR=Os03t0109000-01;KEGG=Os03t0109000-01
Chr03	irgsp1_rep	five_prime_UTR	524008	524095	.	+	.	Parent=Os03t0109000-01
Chr03	irgsp1_rep	CDS	524096	524312	.	+	0	Parent=Os03t0109000-01
Chr03	irgsp1_rep	CDS	524420	524682	.	+	2	Parent=Os03t0109000-01
Chr03	irgsp1_rep	CDS	524770	525183	.	+	0	Parent=Os03t0109000-01
Chr03	irgsp1_rep	three_prime_UTR	525184	525278	.	+	.	Parent=Os03t0109000-01
Chr03	irgsp1_rep	mRNA	537614	542549	.	+	.	ID=Os03t0109300-01;Name=Os03t0109300-01;Locus_id=Os03g0109300;CGSNL Gene Symbol=LOGL3;CGSNL Gene Name=LONELY GUY LIKE PHOSPHORIBOHYDROLASE 3;Oryzabase Gene Symbol Synonym(s)=LOGL3;Oryzabase Gene Name Synonym(s)=LOG LIKE phosphoribohydrolase 3%2C LOG LIKE 3;Note=Similar to Lysine decarboxylase-like protein.;Transcript_evidence=AK099538 (DDBJ%2C Best hit);ORF_evidence=NP_001148891.1 (RefSeq);InterPro=Cytokinin riboside 5&apos%3B-monophosphate phosphoribohydrolase LOG (IPR005269);NIAS_FLcDNA=J013032C19;Oryzabase=9848;Expression=AK099538;TENOR=Os03t0109300-01;KEGG=Os03t0109300-01
Chr03	irgsp1_rep	five_prime_UTR	537614	537694	.	+	.	Parent=Os03t0109300-01
Chr03	irgsp1_rep	CDS	537695	537817	.	+	0	Parent=Os03t0109300-01
Chr03	irgsp1_rep	CDS	539226	539323	.	+	0	Parent=Os03t0109300-01
Chr03	irgsp1_rep	CDS	539655	539685	.	+	1	Parent=Os03t0109300-01
Chr03	irgsp1_rep	CDS	540706	540805	.	+	0	Parent=Os03t0109300-01
Chr03	irgsp1_rep	CDS	541405	541475	.	+	2	Parent=Os03t0109300-01
Chr03	irgsp1_rep	CDS	541636	541779	.	+	0	Parent=Os03t0109300-01
Chr03	irgsp1_rep	CDS	542196	542264	.	+	0	Parent=Os03t0109300-01
Chr03	irgsp1_rep	three_prime_UTR	542265	542549	.	+	.	Parent=Os03t0109300-01
Chr03	irgsp1_rep	mRNA	537689	539326	.	-	.	ID=Os03t0109350-00;Name=Os03t0109350-00;Locus_id=Os03g0109350;Note=Non-protein coding transcript.;Transcript_evidence=AK374302 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0109350-00
Chr03	irgsp1_rep	exon	539148	539326	.	-	.	Parent=Os03t0109350-00
Chr03	irgsp1_rep	exon	537689	537875	.	-	.	Parent=Os03t0109350-00
Chr03	irgsp1_rep	mRNA	549933	552143	.	+	.	ID=Os03t0109400-01;Name=Os03t0109400-01;Locus_id=Os03g0109400;CGSNL Gene Symbol=LF1;CGSNL Gene Name=LATERAL FLORET 1;Oryzabase Gene Symbol Synonym(s)=HOX10%2C Oshox10%2C OsHox10%2C OsHB1%2C HB1%2C OSHB1%2C LF1/OsHB1;Oryzabase Gene Name Synonym(s)=rice homeobox gene 10%2C Homeobox-leucine zipper protein HOX10%2C Homeodomain transcription factor HOX10%2C HD-ZIP protein HOX10%2C HOMEODOMAIN CONTAINING PROTEIN 1%2C Homeodomain transcription factor HOX10%2C lateral florets 1;Note=Similar to cDNA clone:J033091P14%2C full insert sequence.;Transcript_evidence=AK110678 (DDBJ%2C Best hit);ORF_evidence=B7ET29 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);NIAS_FLcDNA=002-169-H01;Oryzabase=8446;Expression=AK110678;TENOR=Os03t0109400-01;KEGG=Os03t0109400-01
Chr03	irgsp1_rep	five_prime_UTR	549933	550214	.	+	.	Parent=Os03t0109400-01
Chr03	irgsp1_rep	five_prime_UTR	550721	550854	.	+	.	Parent=Os03t0109400-01
Chr03	irgsp1_rep	CDS	550855	551093	.	+	0	Parent=Os03t0109400-01
Chr03	irgsp1_rep	CDS	551425	551584	.	+	1	Parent=Os03t0109400-01
Chr03	irgsp1_rep	CDS	551872	551954	.	+	0	Parent=Os03t0109400-01
Chr03	irgsp1_rep	CDS	552053	552143	.	+	1	Parent=Os03t0109400-01
Chr03	irgsp1_rep	mRNA	549939	557886	.	+	.	ID=Os03t0109400-02;Name=Os03t0109400-02;Locus_id=Os03g0109400;RAP-DB Gene Symbol Synonym(s)=LF1%2C OsHB1%2C LF1/OsHB1;RAP-DB Gene Name Synonym(s)=LATERAL FLORET 1;CGSNL Gene Symbol=LF1;CGSNL Gene Name=LATERAL FLORET 1;Oryzabase Gene Symbol Synonym(s)=HOX10%2C Oshox10%2C OsHox10%2C OsHB1%2C HB1%2C OSHB1%2C LF1/OsHB1;Oryzabase Gene Name Synonym(s)=rice homeobox gene 10%2C Homeobox-leucine zipper protein HOX10%2C Homeodomain transcription factor HOX10%2C HD-ZIP protein HOX10%2C HOMEODOMAIN CONTAINING PROTEIN 1%2C Homeodomain transcription factor HOX10%2C lateral florets 1;Note=Class III homeodomain-leucine zipper (HD-ZIP III) protein%2C Transcriptional activator%2C Initiation of lateral floral meristems;Transcript_evidence=AK102378;ORF_evidence=Q6TAQ6;GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: lipid binding (GO:0008289);InterPro=Homeobox-like domain superfamily (IPR009057),START-like domain superfamily (IPR023393),Homeobox domain (IPR001356),START domain (IPR002913),MEKHLA (IPR013978);NIAS_FLcDNA=J033091P14;Manual Curation=June 2%2C 2020;Literature_PMID=28847935;Oryzabase=8446;Expression=AK102378;TENOR=Os03t0109400-02;Subcellular location=nucleus (GO:0005634)
Chr03	irgsp1_rep	five_prime_UTR	549939	550214	.	+	.	Parent=Os03t0109400-02
Chr03	irgsp1_rep	five_prime_UTR	550721	550854	.	+	.	Parent=Os03t0109400-02
Chr03	irgsp1_rep	CDS	550855	551093	.	+	0	Parent=Os03t0109400-02
Chr03	irgsp1_rep	CDS	551425	551584	.	+	1	Parent=Os03t0109400-02
Chr03	irgsp1_rep	CDS	551872	551954	.	+	0	Parent=Os03t0109400-02
Chr03	irgsp1_rep	CDS	552053	552143	.	+	1	Parent=Os03t0109400-02
Chr03	irgsp1_rep	CDS	552240	552335	.	+	0	Parent=Os03t0109400-02
Chr03	irgsp1_rep	CDS	552762	552875	.	+	0	Parent=Os03t0109400-02
Chr03	irgsp1_rep	CDS	552980	553063	.	+	0	Parent=Os03t0109400-02
Chr03	irgsp1_rep	CDS	553148	553303	.	+	0	Parent=Os03t0109400-02
Chr03	irgsp1_rep	CDS	553410	553484	.	+	0	Parent=Os03t0109400-02
Chr03	irgsp1_rep	CDS	553827	553933	.	+	0	Parent=Os03t0109400-02
Chr03	irgsp1_rep	CDS	554016	554199	.	+	1	Parent=Os03t0109400-02
Chr03	irgsp1_rep	CDS	554625	554813	.	+	0	Parent=Os03t0109400-02
Chr03	irgsp1_rep	CDS	555027	555107	.	+	0	Parent=Os03t0109400-02
Chr03	irgsp1_rep	CDS	555449	555580	.	+	0	Parent=Os03t0109400-02
Chr03	irgsp1_rep	CDS	556139	556464	.	+	0	Parent=Os03t0109400-02
Chr03	irgsp1_rep	CDS	556580	556685	.	+	1	Parent=Os03t0109400-02
Chr03	irgsp1_rep	CDS	557146	557295	.	+	0	Parent=Os03t0109400-02
Chr03	irgsp1_rep	CDS	557418	557564	.	+	0	Parent=Os03t0109400-02
Chr03	irgsp1_rep	three_prime_UTR	557565	557886	.	+	.	Parent=Os03t0109400-02
Chr03	irgsp1_rep	mRNA	554064	557870	.	+	.	ID=Os03t0109400-03;Name=Os03t0109400-03;Locus_id=Os03g0109400;CGSNL Gene Symbol=LF1;CGSNL Gene Name=LATERAL FLORET 1;Oryzabase Gene Symbol Synonym(s)=HOX10%2C Oshox10%2C OsHox10%2C OsHB1%2C HB1%2C OSHB1%2C LF1/OsHB1;Oryzabase Gene Name Synonym(s)=rice homeobox gene 10%2C Homeobox-leucine zipper protein HOX10%2C Homeodomain transcription factor HOX10%2C HD-ZIP protein HOX10%2C HOMEODOMAIN CONTAINING PROTEIN 1%2C Homeodomain transcription factor HOX10%2C lateral florets 1;Note=Similar to cDNA clone:J033091P14%2C full insert sequence.;Transcript_evidence=AK059498 (DDBJ%2C Best hit);ORF_evidence=B7ET29 (UniProt);InterPro=MEKHLA (IPR013978);NIAS_FLcDNA=001-028-H11;Oryzabase=8446;Expression=AK059498;TENOR=Os03t0109400-03;KEGG=Os03t0109400-03
Chr03	irgsp1_rep	five_prime_UTR	554064	554064	.	+	.	Parent=Os03t0109400-03
Chr03	irgsp1_rep	CDS	554065	554199	.	+	0	Parent=Os03t0109400-03
Chr03	irgsp1_rep	CDS	554625	554813	.	+	0	Parent=Os03t0109400-03
Chr03	irgsp1_rep	CDS	555027	555107	.	+	0	Parent=Os03t0109400-03
Chr03	irgsp1_rep	CDS	555449	555580	.	+	0	Parent=Os03t0109400-03
Chr03	irgsp1_rep	CDS	556139	556464	.	+	0	Parent=Os03t0109400-03
Chr03	irgsp1_rep	CDS	556580	556685	.	+	1	Parent=Os03t0109400-03
Chr03	irgsp1_rep	CDS	557146	557295	.	+	0	Parent=Os03t0109400-03
Chr03	irgsp1_rep	CDS	557418	557564	.	+	0	Parent=Os03t0109400-03
Chr03	irgsp1_rep	three_prime_UTR	557565	557870	.	+	.	Parent=Os03t0109400-03
Chr03	irgsp1_rep	mRNA	550922	557560	.	-	.	ID=Os03t0109450-00;Name=Os03t0109450-00;Locus_id=Os03g0109450;Note=Hypothetical protein.;Transcript_evidence=tplb0037d04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0109450-00
Chr03	irgsp1_rep	five_prime_UTR	557430	557560	.	-	.	Parent=Os03t0109450-00
Chr03	irgsp1_rep	five_prime_UTR	557072	557312	.	-	.	Parent=Os03t0109450-00
Chr03	irgsp1_rep	five_prime_UTR	556128	556487	.	-	.	Parent=Os03t0109450-00
Chr03	irgsp1_rep	five_prime_UTR	555537	555565	.	-	.	Parent=Os03t0109450-00
Chr03	irgsp1_rep	CDS	555434	555536	.	-	0	Parent=Os03t0109450-00
Chr03	irgsp1_rep	CDS	554733	554869	.	-	2	Parent=Os03t0109450-00
Chr03	irgsp1_rep	three_prime_UTR	554622	554732	.	-	.	Parent=Os03t0109450-00
Chr03	irgsp1_rep	three_prime_UTR	553996	554196	.	-	.	Parent=Os03t0109450-00
Chr03	irgsp1_rep	three_prime_UTR	553831	553911	.	-	.	Parent=Os03t0109450-00
Chr03	irgsp1_rep	three_prime_UTR	553390	553489	.	-	.	Parent=Os03t0109450-00
Chr03	irgsp1_rep	three_prime_UTR	553076	553291	.	-	.	Parent=Os03t0109450-00
Chr03	irgsp1_rep	three_prime_UTR	552750	552882	.	-	.	Parent=Os03t0109450-00
Chr03	irgsp1_rep	three_prime_UTR	552237	552320	.	-	.	Parent=Os03t0109450-00
Chr03	irgsp1_rep	three_prime_UTR	551916	552140	.	-	.	Parent=Os03t0109450-00
Chr03	irgsp1_rep	three_prime_UTR	551405	551575	.	-	.	Parent=Os03t0109450-00
Chr03	irgsp1_rep	three_prime_UTR	550922	551075	.	-	.	Parent=Os03t0109450-00
Chr03	irgsp1_rep	mRNA	559280	559911	.	-	.	ID=Os03t0109500-00;Name=Os03t0109500-00;Locus_id=Os03g0109500;CGSNL Gene Symbol=RPS17;CGSNL Gene Name=RIBOSOMAL PROTEIN S17;Oryzabase Gene Symbol Synonym(s)=OsRPS17;Oryzabase Gene Name Synonym(s)=ribosomal protein S17%2C ribosomal protein small subunit 17;Note=Similar to 40S ribosomal protein S17-4.;Transcript_evidence=CU861770 (DDBJ%2C Best hit);ORF_evidence=NP_001149330.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S17e (IPR001210);Oryzabase=22179;TENOR=Os03t0109500-00;KEGG=Os03t0109500-00
Chr03	irgsp1_rep	five_prime_UTR	559819	559911	.	-	.	Parent=Os03t0109500-00
Chr03	irgsp1_rep	CDS	559384	559818	.	-	0	Parent=Os03t0109500-00
Chr03	irgsp1_rep	three_prime_UTR	559280	559383	.	-	.	Parent=Os03t0109500-00
Chr03	irgsp1_rep	mRNA	560380	562685	.	-	.	ID=Os03t0109600-01;Name=Os03t0109600-01;Locus_id=Os03g0109600;Oryzabase Gene Symbol Synonym(s)=Osj3g1BTF3%2C BTF3a%2C Os03g1BTF3;Oryzabase Gene Name Synonym(s)=BTF3a RNA pol B%2C BTF3a RNA polymerase B%2C Transcription factor BTF3a;Note=Similar to Transcription factor homolog BTF3-like protein.;Transcript_evidence=AK121478 (DDBJ%2C Best hit);ORF_evidence=NP_001171337.1 (RefSeq);InterPro=Nascent polypeptide-associated complex NAC (IPR002715);NIAS_FLcDNA=J023149H07;Oryzabase=14358;Expression=AK121478;TENOR=Os03t0109600-01;KEGG=Os03t0109600-01
Chr03	irgsp1_rep	five_prime_UTR	562548	562685	.	-	.	Parent=Os03t0109600-01
Chr03	irgsp1_rep	CDS	561953	562020	.	-	0	Parent=Os03t0109600-01
Chr03	irgsp1_rep	CDS	561382	561530	.	-	1	Parent=Os03t0109600-01
Chr03	irgsp1_rep	CDS	561234	561290	.	-	2	Parent=Os03t0109600-01
Chr03	irgsp1_rep	CDS	560961	560999	.	-	2	Parent=Os03t0109600-01
Chr03	irgsp1_rep	CDS	560584	560798	.	-	2	Parent=Os03t0109600-01
Chr03	irgsp1_rep	three_prime_UTR	560380	560583	.	-	.	Parent=Os03t0109600-01
Chr03	irgsp1_rep	mRNA	560366	561952	.	-	.	ID=Os03t0109600-02;Name=Os03t0109600-02;Locus_id=Os03g0109600;Oryzabase Gene Symbol Synonym(s)=Osj3g1BTF3%2C BTF3a%2C Os03g1BTF3;Oryzabase Gene Name Synonym(s)=BTF3a RNA pol B%2C BTF3a RNA polymerase B%2C Transcription factor BTF3a;Note=Similar to transcription factor BTF3.;Transcript_evidence=AK069885 (DDBJ%2C Best hit);ORF_evidence=NP_001171337.1 (RefSeq);InterPro=Nascent polypeptide-associated complex NAC (IPR002715);NIAS_FLcDNA=J023037P03;Oryzabase=14358;Expression=AK069885;TENOR=Os03t0109600-02;KEGG=Os03t0109600-02
Chr03	irgsp1_rep	five_prime_UTR	561554	561952	.	-	.	Parent=Os03t0109600-02
Chr03	irgsp1_rep	CDS	561382	561553	.	-	0	Parent=Os03t0109600-02
Chr03	irgsp1_rep	CDS	561160	561290	.	-	2	Parent=Os03t0109600-02
Chr03	irgsp1_rep	three_prime_UTR	560961	561159	.	-	.	Parent=Os03t0109600-02
Chr03	irgsp1_rep	three_prime_UTR	560366	560798	.	-	.	Parent=Os03t0109600-02
Chr03	irgsp1_rep	mRNA	560387	561521	.	-	.	ID=Os03t0109600-03;Name=Os03t0109600-03;Locus_id=Os03g0109600;Oryzabase Gene Symbol Synonym(s)=Osj3g1BTF3%2C BTF3a%2C Os03g1BTF3;Oryzabase Gene Name Synonym(s)=BTF3a RNA pol B%2C BTF3a RNA polymerase B%2C Transcription factor BTF3a;Note=Similar to transcription factor BTF3.;Transcript_evidence=AK061661 (DDBJ%2C Best hit);ORF_evidence=NP_001171337.1 (RefSeq);InterPro=Nascent polypeptide-associated complex NAC (IPR002715);NIAS_FLcDNA=001-036-E03;Oryzabase=14358;Expression=AK061661;TENOR=Os03t0109600-03;KEGG=Os03t0109600-03
Chr03	irgsp1_rep	five_prime_UTR	561521	561521	.	-	.	Parent=Os03t0109600-03
Chr03	irgsp1_rep	CDS	561382	561520	.	-	0	Parent=Os03t0109600-03
Chr03	irgsp1_rep	CDS	561234	561290	.	-	2	Parent=Os03t0109600-03
Chr03	irgsp1_rep	CDS	560961	560999	.	-	2	Parent=Os03t0109600-03
Chr03	irgsp1_rep	CDS	560584	560798	.	-	2	Parent=Os03t0109600-03
Chr03	irgsp1_rep	three_prime_UTR	560387	560583	.	-	.	Parent=Os03t0109600-03
Chr03	irgsp1_rep	mRNA	563316	564412	.	-	.	ID=Os03t0109650-01;Name=Os03t0109650-01;Locus_id=Os03g0109650;Note=Hypothetical conserved gene.;Transcript_evidence=AK289246 (DDBJ%2C Best hit),AK243040 (DDBJ%2C Best hit);ORF_evidence=Q8H7V1 (UniProt);InterPro=Protein of unknown function DUF3755 (IPR022228);NIAS_FLcDNA=J100077L23,J100008F10;TENOR=Os03t0109650-01;KEGG=Os03t0109650-01
Chr03	irgsp1_rep	five_prime_UTR	564411	564412	.	-	.	Parent=Os03t0109650-01
Chr03	irgsp1_rep	CDS	564267	564410	.	-	0	Parent=Os03t0109650-01
Chr03	irgsp1_rep	CDS	563840	563901	.	-	0	Parent=Os03t0109650-01
Chr03	irgsp1_rep	CDS	563664	563748	.	-	1	Parent=Os03t0109650-01
Chr03	irgsp1_rep	CDS	563483	563551	.	-	0	Parent=Os03t0109650-01
Chr03	irgsp1_rep	three_prime_UTR	563316	563482	.	-	.	Parent=Os03t0109650-01
Chr03	irgsp1_rep	mRNA	569030	570850	.	-	.	ID=Os03t0109700-01;Name=Os03t0109700-01;Locus_id=Os03g0109700;Note=Similar to predicted protein.;Transcript_evidence=AK069551 (DDBJ%2C Best hit);ORF_evidence=Q94JY0 (UniProt);NIAS_FLcDNA=J023025O15;Expression=AK069551;TENOR=Os03t0109700-01;KEGG=Os03t0109700-01
Chr03	irgsp1_rep	five_prime_UTR	570766	570850	.	-	.	Parent=Os03t0109700-01
Chr03	irgsp1_rep	CDS	570636	570765	.	-	0	Parent=Os03t0109700-01
Chr03	irgsp1_rep	CDS	570475	570558	.	-	2	Parent=Os03t0109700-01
Chr03	irgsp1_rep	CDS	570132	570206	.	-	2	Parent=Os03t0109700-01
Chr03	irgsp1_rep	CDS	569974	570016	.	-	2	Parent=Os03t0109700-01
Chr03	irgsp1_rep	CDS	569833	569890	.	-	1	Parent=Os03t0109700-01
Chr03	irgsp1_rep	CDS	569547	569717	.	-	0	Parent=Os03t0109700-01
Chr03	irgsp1_rep	three_prime_UTR	569030	569546	.	-	.	Parent=Os03t0109700-01
Chr03	irgsp1_rep	mRNA	567987	570846	.	-	.	ID=Os03t0109700-02;Name=Os03t0109700-02;Locus_id=Os03g0109700;Note=Similar to Cyclin delta-3.;Transcript_evidence=AK100123 (DDBJ%2C Best hit);ORF_evidence=Q94JY0 (UniProt);NIAS_FLcDNA=J023007O11;Expression=AK100123;TENOR=Os03t0109700-02;KEGG=Os03t0109700-02
Chr03	irgsp1_rep	five_prime_UTR	570766	570846	.	-	.	Parent=Os03t0109700-02
Chr03	irgsp1_rep	CDS	570636	570765	.	-	0	Parent=Os03t0109700-02
Chr03	irgsp1_rep	CDS	570475	570558	.	-	2	Parent=Os03t0109700-02
Chr03	irgsp1_rep	CDS	570132	570206	.	-	2	Parent=Os03t0109700-02
Chr03	irgsp1_rep	CDS	569974	570016	.	-	2	Parent=Os03t0109700-02
Chr03	irgsp1_rep	CDS	569833	569890	.	-	1	Parent=Os03t0109700-02
Chr03	irgsp1_rep	CDS	569559	569717	.	-	0	Parent=Os03t0109700-02
Chr03	irgsp1_rep	CDS	569412	569474	.	-	0	Parent=Os03t0109700-02
Chr03	irgsp1_rep	CDS	569237	569328	.	-	0	Parent=Os03t0109700-02
Chr03	irgsp1_rep	CDS	568590	568671	.	-	1	Parent=Os03t0109700-02
Chr03	irgsp1_rep	CDS	568364	568474	.	-	0	Parent=Os03t0109700-02
Chr03	irgsp1_rep	CDS	568130	568270	.	-	0	Parent=Os03t0109700-02
Chr03	irgsp1_rep	three_prime_UTR	567987	568129	.	-	.	Parent=Os03t0109700-02
Chr03	irgsp1_rep	mRNA	571092	573992	.	+	.	ID=Os03t0109800-01;Name=Os03t0109800-01;Locus_id=Os03g0109800;Note=Hypothetical conserved gene.;Transcript_evidence=AK066015 (DDBJ%2C Best hit);ORF_evidence=Q8H7V3 (UniProt);NIAS_FLcDNA=J013046E13;Expression=AK066015;TENOR=Os03t0109800-01;KEGG=Os03t0109800-01
Chr03	irgsp1_rep	five_prime_UTR	571092	571670	.	+	.	Parent=Os03t0109800-01
Chr03	irgsp1_rep	CDS	571671	571967	.	+	0	Parent=Os03t0109800-01
Chr03	irgsp1_rep	three_prime_UTR	571968	572215	.	+	.	Parent=Os03t0109800-01
Chr03	irgsp1_rep	three_prime_UTR	573644	573992	.	+	.	Parent=Os03t0109800-01
Chr03	irgsp1_rep	mRNA	574269	580537	.	-	.	ID=Os03t0109900-01;Name=Os03t0109900-01;Locus_id=Os03g0109900;Note=Peptidase%2C trypsin-like serine and cysteine domain containing protein.;Transcript_evidence=AK065011 (DDBJ%2C Best hit);ORF_evidence=Q8H7V4 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Peptidase cysteine/serine%2C trypsin-like (IPR009003);NIAS_FLcDNA=J013001F03;Expression=AK065011;TENOR=Os03t0109900-01;KEGG=Os03t0109900-01
Chr03	irgsp1_rep	five_prime_UTR	580432	580537	.	-	.	Parent=Os03t0109900-01
Chr03	irgsp1_rep	five_prime_UTR	579467	579520	.	-	.	Parent=Os03t0109900-01
Chr03	irgsp1_rep	five_prime_UTR	578544	579241	.	-	.	Parent=Os03t0109900-01
Chr03	irgsp1_rep	CDS	578516	578543	.	-	0	Parent=Os03t0109900-01
Chr03	irgsp1_rep	CDS	577980	578087	.	-	2	Parent=Os03t0109900-01
Chr03	irgsp1_rep	CDS	577783	577884	.	-	2	Parent=Os03t0109900-01
Chr03	irgsp1_rep	CDS	577547	577686	.	-	2	Parent=Os03t0109900-01
Chr03	irgsp1_rep	CDS	577186	577452	.	-	0	Parent=Os03t0109900-01
Chr03	irgsp1_rep	CDS	576861	577030	.	-	0	Parent=Os03t0109900-01
Chr03	irgsp1_rep	CDS	576332	576378	.	-	1	Parent=Os03t0109900-01
Chr03	irgsp1_rep	CDS	575901	575981	.	-	2	Parent=Os03t0109900-01
Chr03	irgsp1_rep	CDS	575686	575817	.	-	2	Parent=Os03t0109900-01
Chr03	irgsp1_rep	CDS	575482	575606	.	-	2	Parent=Os03t0109900-01
Chr03	irgsp1_rep	CDS	575081	575350	.	-	0	Parent=Os03t0109900-01
Chr03	irgsp1_rep	CDS	574831	574964	.	-	0	Parent=Os03t0109900-01
Chr03	irgsp1_rep	CDS	574576	574600	.	-	1	Parent=Os03t0109900-01
Chr03	irgsp1_rep	three_prime_UTR	574269	574575	.	-	.	Parent=Os03t0109900-01
Chr03	irgsp1_rep	mRNA	574309	578006	.	-	.	ID=Os03t0109900-02;Name=Os03t0109900-02;Locus_id=Os03g0109900;Note=Hypothetical conserved gene.;Transcript_evidence=AK061655 (DDBJ%2C Best hit);ORF_evidence=Q10SV4 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Peptidase cysteine/serine%2C trypsin-like (IPR009003);NIAS_FLcDNA=001-036-D01;Expression=AK061655;TENOR=Os03t0109900-02;KEGG=Os03t0109900-02
Chr03	irgsp1_rep	five_prime_UTR	578005	578006	.	-	.	Parent=Os03t0109900-02
Chr03	irgsp1_rep	CDS	577980	578004	.	-	0	Parent=Os03t0109900-02
Chr03	irgsp1_rep	CDS	577783	577884	.	-	2	Parent=Os03t0109900-02
Chr03	irgsp1_rep	CDS	577547	577686	.	-	2	Parent=Os03t0109900-02
Chr03	irgsp1_rep	CDS	577186	577452	.	-	0	Parent=Os03t0109900-02
Chr03	irgsp1_rep	CDS	576861	577030	.	-	0	Parent=Os03t0109900-02
Chr03	irgsp1_rep	CDS	576332	576378	.	-	1	Parent=Os03t0109900-02
Chr03	irgsp1_rep	CDS	575901	575981	.	-	2	Parent=Os03t0109900-02
Chr03	irgsp1_rep	CDS	575686	575817	.	-	2	Parent=Os03t0109900-02
Chr03	irgsp1_rep	CDS	575559	575606	.	-	2	Parent=Os03t0109900-02
Chr03	irgsp1_rep	CDS	574933	574964	.	-	2	Parent=Os03t0109900-02
Chr03	irgsp1_rep	three_prime_UTR	574831	574932	.	-	.	Parent=Os03t0109900-02
Chr03	irgsp1_rep	three_prime_UTR	574309	574600	.	-	.	Parent=Os03t0109900-02
Chr03	irgsp1_rep	mRNA	574309	578006	.	-	.	ID=Os03t0109900-03;Name=Os03t0109900-03;Locus_id=Os03g0109900;Note=Peptidase cysteine/serine%2C trypsin-like domain containing protein.;Transcript_evidence=AK071535 (DDBJ%2C Best hit);ORF_evidence=Q10SV5 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Peptidase cysteine/serine%2C trypsin-like (IPR009003);NIAS_FLcDNA=J023099I18;TENOR=Os03t0109900-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	578005	578006	.	-	.	Parent=Os03t0109900-03
Chr03	irgsp1_rep	CDS	577980	578004	.	-	0	Parent=Os03t0109900-03
Chr03	irgsp1_rep	CDS	577783	577884	.	-	2	Parent=Os03t0109900-03
Chr03	irgsp1_rep	CDS	577547	577686	.	-	2	Parent=Os03t0109900-03
Chr03	irgsp1_rep	CDS	577186	577452	.	-	0	Parent=Os03t0109900-03
Chr03	irgsp1_rep	CDS	576861	577030	.	-	0	Parent=Os03t0109900-03
Chr03	irgsp1_rep	CDS	576332	576378	.	-	1	Parent=Os03t0109900-03
Chr03	irgsp1_rep	CDS	575901	575981	.	-	2	Parent=Os03t0109900-03
Chr03	irgsp1_rep	CDS	575686	575817	.	-	2	Parent=Os03t0109900-03
Chr03	irgsp1_rep	CDS	575482	575606	.	-	2	Parent=Os03t0109900-03
Chr03	irgsp1_rep	CDS	575346	575384	.	-	0	Parent=Os03t0109900-03
Chr03	irgsp1_rep	three_prime_UTR	575081	575345	.	-	.	Parent=Os03t0109900-03
Chr03	irgsp1_rep	three_prime_UTR	574831	574964	.	-	.	Parent=Os03t0109900-03
Chr03	irgsp1_rep	three_prime_UTR	574309	574600	.	-	.	Parent=Os03t0109900-03
Chr03	irgsp1_rep	mRNA	598920	599960	.	+	.	ID=Os03t0110300-02;Name=Os03t0110300-02;Locus_id=Os03g0110300;Note=Conserved hypothetical protein.;Transcript_evidence=AK106206 (DDBJ%2C Best hit),AK066190 (DDBJ%2C Best hit),AK066769 (DDBJ%2C Best hit);ORF_evidence=B9FAD8 (UniProt);NIAS_FLcDNA=001-208-G02,J013056G16,J013082M21;Expression=AK106206;TENOR=Os03t0110300-02;KEGG=Os03t0110300-02
Chr03	irgsp1_rep	five_prime_UTR	598920	598982	.	+	.	Parent=Os03t0110300-02
Chr03	irgsp1_rep	CDS	598983	599501	.	+	0	Parent=Os03t0110300-02
Chr03	irgsp1_rep	three_prime_UTR	599502	599960	.	+	.	Parent=Os03t0110300-02
Chr03	irgsp1_rep	mRNA	602507	609330	.	+	.	ID=Os03t0110400-01;Name=Os03t0110400-01;Locus_id=Os03g0110400;Note=Similar to nuclear matrix protein-related.;Transcript_evidence=AK100395 (DDBJ%2C Best hit);ORF_evidence=NP_568219.1 (RefSeq);InterPro=THO complex%2C subunit THOC1 (IPR021861);NIAS_FLcDNA=J023086G02;Expression=AK100395;TENOR=Os03t0110400-01;KEGG=Os03t0110400-01
Chr03	irgsp1_rep	five_prime_UTR	602507	602642	.	+	.	Parent=Os03t0110400-01
Chr03	irgsp1_rep	CDS	602643	602789	.	+	0	Parent=Os03t0110400-01
Chr03	irgsp1_rep	CDS	602931	603014	.	+	0	Parent=Os03t0110400-01
Chr03	irgsp1_rep	CDS	603154	603228	.	+	0	Parent=Os03t0110400-01
Chr03	irgsp1_rep	CDS	603547	603628	.	+	0	Parent=Os03t0110400-01
Chr03	irgsp1_rep	CDS	603733	603878	.	+	2	Parent=Os03t0110400-01
Chr03	irgsp1_rep	CDS	603992	604063	.	+	0	Parent=Os03t0110400-01
Chr03	irgsp1_rep	CDS	604420	604492	.	+	0	Parent=Os03t0110400-01
Chr03	irgsp1_rep	CDS	604588	604653	.	+	2	Parent=Os03t0110400-01
Chr03	irgsp1_rep	CDS	604800	604846	.	+	2	Parent=Os03t0110400-01
Chr03	irgsp1_rep	CDS	604971	605042	.	+	0	Parent=Os03t0110400-01
Chr03	irgsp1_rep	CDS	605149	605277	.	+	0	Parent=Os03t0110400-01
Chr03	irgsp1_rep	CDS	605361	605468	.	+	0	Parent=Os03t0110400-01
Chr03	irgsp1_rep	CDS	605978	606094	.	+	0	Parent=Os03t0110400-01
Chr03	irgsp1_rep	CDS	606185	606267	.	+	0	Parent=Os03t0110400-01
Chr03	irgsp1_rep	CDS	607000	607066	.	+	1	Parent=Os03t0110400-01
Chr03	irgsp1_rep	CDS	607360	607431	.	+	0	Parent=Os03t0110400-01
Chr03	irgsp1_rep	CDS	607529	607579	.	+	0	Parent=Os03t0110400-01
Chr03	irgsp1_rep	CDS	608359	608418	.	+	0	Parent=Os03t0110400-01
Chr03	irgsp1_rep	CDS	608522	608671	.	+	0	Parent=Os03t0110400-01
Chr03	irgsp1_rep	CDS	608762	608977	.	+	0	Parent=Os03t0110400-01
Chr03	irgsp1_rep	three_prime_UTR	608978	609330	.	+	.	Parent=Os03t0110400-01
Chr03	irgsp1_rep	mRNA	603572	609222	.	+	.	ID=Os03t0110400-02;Name=Os03t0110400-02;Locus_id=Os03g0110400;Note=Hypothetical conserved gene.;Transcript_evidence=AK059259 (DDBJ%2C Best hit);ORF_evidence=B8ALF8 (UniProt);InterPro=THO complex%2C subunit THOC1 (IPR021861);NIAS_FLcDNA=001-025-A05;Expression=AK059259;TENOR=Os03t0110400-02;KEGG=Os03t0110400-02
Chr03	irgsp1_rep	five_prime_UTR	603572	603573	.	+	.	Parent=Os03t0110400-02
Chr03	irgsp1_rep	CDS	603574	603628	.	+	0	Parent=Os03t0110400-02
Chr03	irgsp1_rep	CDS	603733	603878	.	+	2	Parent=Os03t0110400-02
Chr03	irgsp1_rep	CDS	603992	604063	.	+	0	Parent=Os03t0110400-02
Chr03	irgsp1_rep	CDS	604420	604492	.	+	0	Parent=Os03t0110400-02
Chr03	irgsp1_rep	CDS	604588	604653	.	+	2	Parent=Os03t0110400-02
Chr03	irgsp1_rep	CDS	604800	604846	.	+	2	Parent=Os03t0110400-02
Chr03	irgsp1_rep	CDS	604971	605042	.	+	0	Parent=Os03t0110400-02
Chr03	irgsp1_rep	CDS	605149	605277	.	+	0	Parent=Os03t0110400-02
Chr03	irgsp1_rep	CDS	605361	605468	.	+	0	Parent=Os03t0110400-02
Chr03	irgsp1_rep	CDS	605978	606094	.	+	0	Parent=Os03t0110400-02
Chr03	irgsp1_rep	CDS	606185	606267	.	+	0	Parent=Os03t0110400-02
Chr03	irgsp1_rep	CDS	607000	607042	.	+	1	Parent=Os03t0110400-02
Chr03	irgsp1_rep	CDS	608403	608418	.	+	0	Parent=Os03t0110400-02
Chr03	irgsp1_rep	CDS	608522	608529	.	+	2	Parent=Os03t0110400-02
Chr03	irgsp1_rep	three_prime_UTR	608530	608671	.	+	.	Parent=Os03t0110400-02
Chr03	irgsp1_rep	three_prime_UTR	608762	609222	.	+	.	Parent=Os03t0110400-02
Chr03	irgsp1_rep	mRNA	609881	614424	.	+	.	ID=Os03t0110500-01;Name=Os03t0110500-01;Locus_id=Os03g0110500;Note=KIP1-like domain containing protein.;Transcript_evidence=AK101157 (DDBJ%2C Best hit);ORF_evidence=NP_001149784.1 (RefSeq);InterPro=KIP1-like (IPR011684);NIAS_FLcDNA=J033027K03;Expression=AK101157;TENOR=Os03t0110500-01;KEGG=Os03t0110500-01
Chr03	irgsp1_rep	five_prime_UTR	609881	610053	.	+	.	Parent=Os03t0110500-01
Chr03	irgsp1_rep	five_prime_UTR	611576	611662	.	+	.	Parent=Os03t0110500-01
Chr03	irgsp1_rep	CDS	611663	611732	.	+	0	Parent=Os03t0110500-01
Chr03	irgsp1_rep	CDS	613176	614161	.	+	2	Parent=Os03t0110500-01
Chr03	irgsp1_rep	three_prime_UTR	614162	614424	.	+	.	Parent=Os03t0110500-01
Chr03	irgsp1_rep	mRNA	616425	623627	.	+	.	ID=Os03t0110600-00;Name=Os03t0110600-00;Locus_id=Os03g0110600;Note=Similar to LysM domain containing protein%2C expressed.;Transcript_evidence=AK356815 (DDBJ);ORF_evidence=Q10SU7 (UniProt);TENOR=Os03t0110600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	616425	616917	.	+	0	Parent=Os03t0110600-00
Chr03	irgsp1_rep	CDS	621395	621511	.	+	2	Parent=Os03t0110600-00
Chr03	irgsp1_rep	CDS	621615	621700	.	+	2	Parent=Os03t0110600-00
Chr03	irgsp1_rep	three_prime_UTR	621701	621713	.	+	.	Parent=Os03t0110600-00
Chr03	irgsp1_rep	three_prime_UTR	622860	623627	.	+	.	Parent=Os03t0110600-00
Chr03	irgsp1_rep	mRNA	632592	636205	.	-	.	ID=Os03t0110700-00;Name=Os03t0110700-00;Locus_id=Os03g0110700;Note=Hypothetical protein.;Transcript_evidence=tplb0029n18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0110700-00
Chr03	irgsp1_rep	five_prime_UTR	635015	636205	.	-	.	Parent=Os03t0110700-00
Chr03	irgsp1_rep	five_prime_UTR	634636	634827	.	-	.	Parent=Os03t0110700-00
Chr03	irgsp1_rep	CDS	634626	634635	.	-	0	Parent=Os03t0110700-00
Chr03	irgsp1_rep	CDS	633926	634055	.	-	2	Parent=Os03t0110700-00
Chr03	irgsp1_rep	CDS	633629	633754	.	-	1	Parent=Os03t0110700-00
Chr03	irgsp1_rep	CDS	633403	633513	.	-	1	Parent=Os03t0110700-00
Chr03	irgsp1_rep	CDS	632594	632846	.	-	1	Parent=Os03t0110700-00
Chr03	irgsp1_rep	three_prime_UTR	632592	632593	.	-	.	Parent=Os03t0110700-00
Chr03	irgsp1_rep	mRNA	632664	636333	.	+	.	ID=Os03t0110800-01;Name=Os03t0110800-01;Locus_id=Os03g0110800;RAP-DB Gene Symbol Synonym(s)=DRM2%2C OsDRM2%2C osdrm2;RAP-DB Gene Name Synonym(s)=DOMAINS REARRANGED METHYLTRANSFERASE 2%2C domains rearranged methyltransferase 2%2C domains rearranged methylase 2;CGSNL Gene Symbol=DRM2;CGSNL Gene Name=DOMAINS REARRANGED METHYLTRANSFERASE 2;Oryzabase Gene Symbol Synonym(s)=OsDRM2%2C osdrm2%2C DRM2-1;Oryzabase Gene Name Synonym(s)=domains rearranged methyltransferase 2%2C domains rearranged methylase 2;Note=DNA methyltransferase%2C Vegetative and reproductive development;Transcript_evidence=AB524355,AK065147;ORF_evidence=Q10SU5,Q10SU4;GO=Biological Process: DNA methylation (GO:0006306);InterPro=S-adenosyl-L-methionine-dependent methyltransferase (IPR029063),SAM-dependent methyltransferase DRM (IPR030380);NIAS_FLcDNA=J013002A23;Manual Curation=March 10%2C 2015;Literature_PMID=22380881;Oryzabase=10396;Expression=AK065147;TENOR=Os03t0110800-01;KEGG=Os03t0110800-01
Chr03	irgsp1_rep	five_prime_UTR	632664	632833	.	+	.	Parent=Os03t0110800-01
Chr03	irgsp1_rep	CDS	632834	632839	.	+	0	Parent=Os03t0110800-01
Chr03	irgsp1_rep	CDS	633400	633522	.	+	0	Parent=Os03t0110800-01
Chr03	irgsp1_rep	CDS	633638	633737	.	+	0	Parent=Os03t0110800-01
Chr03	irgsp1_rep	CDS	633822	633868	.	+	2	Parent=Os03t0110800-01
Chr03	irgsp1_rep	CDS	633947	634105	.	+	0	Parent=Os03t0110800-01
Chr03	irgsp1_rep	CDS	634688	634784	.	+	0	Parent=Os03t0110800-01
Chr03	irgsp1_rep	CDS	634864	634955	.	+	2	Parent=Os03t0110800-01
Chr03	irgsp1_rep	CDS	635045	636214	.	+	0	Parent=Os03t0110800-01
Chr03	irgsp1_rep	three_prime_UTR	636215	636333	.	+	.	Parent=Os03t0110800-01
Chr03	irgsp1_rep	mRNA	636744	639366	.	+	.	ID=Os03t0110900-01;Name=Os03t0110900-01;Locus_id=Os03g0110900;Note=Dimeric alpha-beta barrel domain containing protein.;Transcript_evidence=AK070403 (DDBJ%2C Best hit);ORF_evidence=Q10SU2 (UniProt);InterPro=Dimeric alpha-beta barrel (IPR011008),Stress responsive alpha-beta barrel (IPR013097);NIAS_FLcDNA=J023050B17;TENOR=Os03t0110900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	636744	636857	.	+	.	Parent=Os03t0110900-01
Chr03	irgsp1_rep	CDS	636858	636957	.	+	0	Parent=Os03t0110900-01
Chr03	irgsp1_rep	CDS	637049	637148	.	+	2	Parent=Os03t0110900-01
Chr03	irgsp1_rep	CDS	637401	637528	.	+	1	Parent=Os03t0110900-01
Chr03	irgsp1_rep	CDS	637620	637759	.	+	2	Parent=Os03t0110900-01
Chr03	irgsp1_rep	CDS	637857	637925	.	+	0	Parent=Os03t0110900-01
Chr03	irgsp1_rep	CDS	638035	638173	.	+	0	Parent=Os03t0110900-01
Chr03	irgsp1_rep	CDS	638279	638341	.	+	2	Parent=Os03t0110900-01
Chr03	irgsp1_rep	CDS	638542	638585	.	+	2	Parent=Os03t0110900-01
Chr03	irgsp1_rep	CDS	638994	639080	.	+	0	Parent=Os03t0110900-01
Chr03	irgsp1_rep	three_prime_UTR	639081	639366	.	+	.	Parent=Os03t0110900-01
Chr03	irgsp1_rep	mRNA	639561	640077	.	-	.	ID=Os03t0111000-01;Name=Os03t0111000-01;Locus_id=Os03g0111000;Oryzabase Gene Symbol Synonym(s)=OsCLE301%2C CLE301;Oryzabase Gene Name Synonym(s)=CLV3/ESR-related 301%2C CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 301;Note=Conserved hypothetical protein.;Transcript_evidence=AK062759 (DDBJ%2C Best hit);ORF_evidence=B8ALG1 (UniProt);NIAS_FLcDNA=001-106-G11;Oryzabase=14228;Expression=AK062759;TENOR=Os03t0111000-01;KEGG=Os03t0111000-01
Chr03	irgsp1_rep	five_prime_UTR	639977	640077	.	-	.	Parent=Os03t0111000-01
Chr03	irgsp1_rep	CDS	639689	639976	.	-	0	Parent=Os03t0111000-01
Chr03	irgsp1_rep	three_prime_UTR	639561	639688	.	-	.	Parent=Os03t0111000-01
Chr03	irgsp1_rep	mRNA	640597	645631	.	-	.	ID=Os03t0111100-01;Name=Os03t0111100-01;Locus_id=Os03g0111100;Note=Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase.;Transcript_evidence=AK102025 (DDBJ%2C Best hit);ORF_evidence=B6SW32 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Biological Process: folic acid-containing compound biosynthetic process (GO:0009396),Molecular Function: tetrahydrofolylpolyglutamate synthase activity (GO:0004326),Molecular Function: ATP binding (GO:0005524),Molecular Function: ligase activity (GO:0016874);InterPro=Folylpolyglutamate synthetase (IPR001645),Mur ligase%2C C-terminal (IPR004101),Mur ligase%2C central (IPR013221),Folylpolyglutamate synthetase%2C conserved site (IPR018109),Folylpolyglutamate synthase%2C eukaryota (IPR023600);NIAS_FLcDNA=J033080K13;Expression=AK102025;TENOR=Os03t0111100-01;KEGG=Os03t0111100-01 (EC:6.3.2.17)
Chr03	irgsp1_rep	five_prime_UTR	645502	645631	.	-	.	Parent=Os03t0111100-01
Chr03	irgsp1_rep	CDS	645351	645501	.	-	0	Parent=Os03t0111100-01
Chr03	irgsp1_rep	CDS	645123	645250	.	-	2	Parent=Os03t0111100-01
Chr03	irgsp1_rep	CDS	644947	645012	.	-	0	Parent=Os03t0111100-01
Chr03	irgsp1_rep	CDS	644570	644679	.	-	0	Parent=Os03t0111100-01
Chr03	irgsp1_rep	CDS	644223	644283	.	-	1	Parent=Os03t0111100-01
Chr03	irgsp1_rep	CDS	643958	644041	.	-	0	Parent=Os03t0111100-01
Chr03	irgsp1_rep	CDS	643519	643575	.	-	0	Parent=Os03t0111100-01
Chr03	irgsp1_rep	CDS	643088	643148	.	-	0	Parent=Os03t0111100-01
Chr03	irgsp1_rep	CDS	642959	643005	.	-	2	Parent=Os03t0111100-01
Chr03	irgsp1_rep	CDS	642725	642802	.	-	0	Parent=Os03t0111100-01
Chr03	irgsp1_rep	CDS	642452	642616	.	-	0	Parent=Os03t0111100-01
Chr03	irgsp1_rep	CDS	642087	642338	.	-	0	Parent=Os03t0111100-01
Chr03	irgsp1_rep	CDS	641892	641970	.	-	0	Parent=Os03t0111100-01
Chr03	irgsp1_rep	CDS	641529	641684	.	-	2	Parent=Os03t0111100-01
Chr03	irgsp1_rep	CDS	641297	641406	.	-	2	Parent=Os03t0111100-01
Chr03	irgsp1_rep	CDS	640935	640994	.	-	0	Parent=Os03t0111100-01
Chr03	irgsp1_rep	three_prime_UTR	640597	640934	.	-	.	Parent=Os03t0111100-01
Chr03	irgsp1_rep	mRNA	647000	649463	.	-	.	ID=Os03t0111200-01;Name=Os03t0111200-01;Locus_id=Os03g0111200;CGSNL Gene Symbol=REM1.3;CGSNL Gene Name=REMORIN 1.3;Oryzabase Gene Symbol Synonym(s)=OsREM1.3;Oryzabase Gene Name Synonym(s)=Remorin 1.3%2C remorin group 1 member 3;Note=Similar to Remorin.;Transcript_evidence=AK060379 (DDBJ%2C Best hit);ORF_evidence=B6U3W6 (UniProt);InterPro=Remorin%2C C-terminal (IPR005516),Remorin%2C N-terminal (IPR005518);NIAS_FLcDNA=001-009-D11;Oryzabase=20271;Expression=AK060379;TENOR=Os03t0111200-01;KEGG=Os03t0111200-01
Chr03	irgsp1_rep	five_prime_UTR	649225	649463	.	-	.	Parent=Os03t0111200-01
Chr03	irgsp1_rep	CDS	649101	649224	.	-	0	Parent=Os03t0111200-01
Chr03	irgsp1_rep	CDS	648151	648183	.	-	2	Parent=Os03t0111200-01
Chr03	irgsp1_rep	CDS	647958	648045	.	-	2	Parent=Os03t0111200-01
Chr03	irgsp1_rep	CDS	647574	647655	.	-	1	Parent=Os03t0111200-01
Chr03	irgsp1_rep	CDS	647264	647464	.	-	0	Parent=Os03t0111200-01
Chr03	irgsp1_rep	three_prime_UTR	647000	647263	.	-	.	Parent=Os03t0111200-01
Chr03	irgsp1_rep	mRNA	652323	652798	.	-	.	ID=Os03t0111300-01;Name=Os03t0111300-01;Locus_id=Os03g0111300;CGSNL Gene Symbol=LTP2;CGSNL Gene Name=LIPID TRANSFER PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=nsLTP2%2C OsLTP2.3%2C Ltp2%2C OsLTP2%2C RLTP2%2C OsLtpII.3;Oryzabase Gene Name Synonym(s)=non-specific lipid-transfer protein 2%2C type-2 lipid transfer protein%2C Nonspecific Lipid Transfer Protein-2%2C lipid transfer protein-2;Note=Nonspecific lipid-transfer protein 2 (nsLTP2) (7 kDa lipid transfer protein).;Transcript_evidence=AK062506 (DDBJ%2C Best hit);ORF_evidence=Q10ST8 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=001-104-B07;Oryzabase=9011;Expression=AK062506;TENOR=Os03t0111300-01;KEGG=Os03t0111300-01
Chr03	irgsp1_rep	five_prime_UTR	652753	652798	.	-	.	Parent=Os03t0111300-01
Chr03	irgsp1_rep	CDS	652462	652752	.	-	0	Parent=Os03t0111300-01
Chr03	irgsp1_rep	three_prime_UTR	652323	652461	.	-	.	Parent=Os03t0111300-01
Chr03	irgsp1_rep	mRNA	656536	657827	.	-	.	ID=Os03t0111400-01;Name=Os03t0111400-01;Locus_id=Os03g0111400;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK243276 (DDBJ%2C Best hit);ORF_evidence=Q01II0 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);NIAS_FLcDNA=J100050C22;TENOR=Os03t0111400-01;KEGG=Os03t0111400-01
Chr03	irgsp1_rep	five_prime_UTR	657745	657827	.	-	.	Parent=Os03t0111400-01
Chr03	irgsp1_rep	CDS	657736	657744	.	-	0	Parent=Os03t0111400-01
Chr03	irgsp1_rep	CDS	657508	657589	.	-	0	Parent=Os03t0111400-01
Chr03	irgsp1_rep	CDS	656681	656907	.	-	2	Parent=Os03t0111400-01
Chr03	irgsp1_rep	three_prime_UTR	656536	656680	.	-	.	Parent=Os03t0111400-01
Chr03	irgsp1_rep	mRNA	658654	661346	.	+	.	ID=Os03t0111500-01;Name=Os03t0111500-01;Locus_id=Os03g0111500;Oryzabase Gene Name Synonym(s)=DNA J domain protein;Note=Hypothetical conserved gene.;Transcript_evidence=AK067241 (DDBJ%2C Best hit);ORF_evidence=Q10ST5 (UniProt);NIAS_FLcDNA=J013096G22;Oryzabase=15988;Expression=AK067241;TENOR=Os03t0111500-01;KEGG=Os03t0111500-01
Chr03	irgsp1_rep	five_prime_UTR	658654	658664	.	+	.	Parent=Os03t0111500-01
Chr03	irgsp1_rep	CDS	658665	658883	.	+	0	Parent=Os03t0111500-01
Chr03	irgsp1_rep	three_prime_UTR	658884	660046	.	+	.	Parent=Os03t0111500-01
Chr03	irgsp1_rep	three_prime_UTR	660153	661346	.	+	.	Parent=Os03t0111500-01
Chr03	irgsp1_rep	mRNA	662303	666757	.	-	.	ID=Os03t0111600-01;Name=Os03t0111600-01;Locus_id=Os03g0111600;Note=Protein of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK101020 (DDBJ%2C Best hit);ORF_evidence=A3ADD8 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=J023149K08;Expression=AK101020;TENOR=Os03t0111600-01;KEGG=Os03t0111600-01
Chr03	irgsp1_rep	five_prime_UTR	666718	666757	.	-	.	Parent=Os03t0111600-01
Chr03	irgsp1_rep	CDS	665712	666717	.	-	0	Parent=Os03t0111600-01
Chr03	irgsp1_rep	CDS	664450	664613	.	-	2	Parent=Os03t0111600-01
Chr03	irgsp1_rep	CDS	664139	664355	.	-	0	Parent=Os03t0111600-01
Chr03	irgsp1_rep	CDS	662461	662801	.	-	2	Parent=Os03t0111600-01
Chr03	irgsp1_rep	three_prime_UTR	662303	662460	.	-	.	Parent=Os03t0111600-01
Chr03	irgsp1_rep	mRNA	666268	674025	.	+	.	ID=Os03t0111700-01;Name=Os03t0111700-01;Locus_id=Os03g0111700;Note=Similar to TWN2 (TWIN 2)%3B ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / valine-tRNA ligase.;Transcript_evidence=AK066973 (DDBJ%2C Best hit);ORF_evidence=NP_172913.1 (RefSeq);NIAS_FLcDNA=J013089D01;TENOR=Os03t0111700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	666268	667307	.	+	.	Parent=Os03t0111700-01
Chr03	irgsp1_rep	CDS	667308	667511	.	+	0	Parent=Os03t0111700-01
Chr03	irgsp1_rep	CDS	667628	667797	.	+	0	Parent=Os03t0111700-01
Chr03	irgsp1_rep	CDS	667894	667974	.	+	1	Parent=Os03t0111700-01
Chr03	irgsp1_rep	CDS	668089	668128	.	+	1	Parent=Os03t0111700-01
Chr03	irgsp1_rep	three_prime_UTR	668129	668154	.	+	.	Parent=Os03t0111700-01
Chr03	irgsp1_rep	three_prime_UTR	668259	668342	.	+	.	Parent=Os03t0111700-01
Chr03	irgsp1_rep	three_prime_UTR	668746	668823	.	+	.	Parent=Os03t0111700-01
Chr03	irgsp1_rep	three_prime_UTR	669080	669163	.	+	.	Parent=Os03t0111700-01
Chr03	irgsp1_rep	three_prime_UTR	669263	669342	.	+	.	Parent=Os03t0111700-01
Chr03	irgsp1_rep	three_prime_UTR	669465	669565	.	+	.	Parent=Os03t0111700-01
Chr03	irgsp1_rep	three_prime_UTR	669655	669766	.	+	.	Parent=Os03t0111700-01
Chr03	irgsp1_rep	three_prime_UTR	669867	669957	.	+	.	Parent=Os03t0111700-01
Chr03	irgsp1_rep	three_prime_UTR	670057	670227	.	+	.	Parent=Os03t0111700-01
Chr03	irgsp1_rep	three_prime_UTR	670753	670943	.	+	.	Parent=Os03t0111700-01
Chr03	irgsp1_rep	three_prime_UTR	671061	671463	.	+	.	Parent=Os03t0111700-01
Chr03	irgsp1_rep	three_prime_UTR	672023	672274	.	+	.	Parent=Os03t0111700-01
Chr03	irgsp1_rep	three_prime_UTR	672351	672851	.	+	.	Parent=Os03t0111700-01
Chr03	irgsp1_rep	three_prime_UTR	672961	673058	.	+	.	Parent=Os03t0111700-01
Chr03	irgsp1_rep	three_prime_UTR	673191	673290	.	+	.	Parent=Os03t0111700-01
Chr03	irgsp1_rep	three_prime_UTR	673422	673566	.	+	.	Parent=Os03t0111700-01
Chr03	irgsp1_rep	three_prime_UTR	673671	674025	.	+	.	Parent=Os03t0111700-01
Chr03	irgsp1_rep	mRNA	674687	681881	.	+	.	ID=Os03t0111800-01;Name=Os03t0111800-01;Locus_id=Os03g0111800;Note=WD40/YVTN repeat-like domain containing protein.;Transcript_evidence=AK121627 (DDBJ%2C Best hit);ORF_evidence=B9FAE6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J033049G04;Expression=AK121627;TENOR=Os03t0111800-01;KEGG=Os03t0111800-01
Chr03	irgsp1_rep	five_prime_UTR	674687	674695	.	+	.	Parent=Os03t0111800-01
Chr03	irgsp1_rep	CDS	674696	674792	.	+	0	Parent=Os03t0111800-01
Chr03	irgsp1_rep	CDS	674874	675151	.	+	2	Parent=Os03t0111800-01
Chr03	irgsp1_rep	CDS	675251	675344	.	+	0	Parent=Os03t0111800-01
Chr03	irgsp1_rep	CDS	675459	675541	.	+	2	Parent=Os03t0111800-01
Chr03	irgsp1_rep	CDS	675682	675902	.	+	0	Parent=Os03t0111800-01
Chr03	irgsp1_rep	CDS	676050	676188	.	+	1	Parent=Os03t0111800-01
Chr03	irgsp1_rep	CDS	676283	676365	.	+	0	Parent=Os03t0111800-01
Chr03	irgsp1_rep	CDS	676479	676691	.	+	1	Parent=Os03t0111800-01
Chr03	irgsp1_rep	CDS	676793	677149	.	+	1	Parent=Os03t0111800-01
Chr03	irgsp1_rep	CDS	677242	677413	.	+	1	Parent=Os03t0111800-01
Chr03	irgsp1_rep	CDS	677740	677931	.	+	0	Parent=Os03t0111800-01
Chr03	irgsp1_rep	CDS	678018	678224	.	+	0	Parent=Os03t0111800-01
Chr03	irgsp1_rep	CDS	678316	678408	.	+	0	Parent=Os03t0111800-01
Chr03	irgsp1_rep	CDS	678612	678811	.	+	0	Parent=Os03t0111800-01
Chr03	irgsp1_rep	CDS	678984	679493	.	+	1	Parent=Os03t0111800-01
Chr03	irgsp1_rep	CDS	679606	679686	.	+	1	Parent=Os03t0111800-01
Chr03	irgsp1_rep	CDS	679769	679852	.	+	1	Parent=Os03t0111800-01
Chr03	irgsp1_rep	CDS	679975	680618	.	+	1	Parent=Os03t0111800-01
Chr03	irgsp1_rep	CDS	680712	680862	.	+	2	Parent=Os03t0111800-01
Chr03	irgsp1_rep	CDS	680939	681035	.	+	1	Parent=Os03t0111800-01
Chr03	irgsp1_rep	three_prime_UTR	681036	681881	.	+	.	Parent=Os03t0111800-01
Chr03	irgsp1_rep	mRNA	697964	702761	.	+	.	ID=Os03t0112101-00;Name=Os03t0112101-00;Locus_id=Os03g0112101;Note=Similar to Adaptin N terminal region family protein%2C expressed.;Transcript_evidence=CT835180 (DDBJ%2C Best hit);ORF_evidence=Q10SS6 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: membrane coat (GO:0030117),Molecular Function: binding (GO:0005488);InterPro=Clathrin/coatomer adaptor%2C adaptin-like%2C N-terminal (IPR002553),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);TENOR=Os03t0112101-00
Chr03	irgsp1_rep	five_prime_UTR	697964	698192	.	+	.	Parent=Os03t0112101-00
Chr03	irgsp1_rep	CDS	698193	698324	.	+	0	Parent=Os03t0112101-00
Chr03	irgsp1_rep	CDS	699483	699614	.	+	0	Parent=Os03t0112101-00
Chr03	irgsp1_rep	CDS	699740	699865	.	+	0	Parent=Os03t0112101-00
Chr03	irgsp1_rep	CDS	700475	700537	.	+	0	Parent=Os03t0112101-00
Chr03	irgsp1_rep	CDS	700619	700716	.	+	0	Parent=Os03t0112101-00
Chr03	irgsp1_rep	CDS	700788	700995	.	+	1	Parent=Os03t0112101-00
Chr03	irgsp1_rep	CDS	701514	701585	.	+	0	Parent=Os03t0112101-00
Chr03	irgsp1_rep	CDS	701671	701763	.	+	0	Parent=Os03t0112101-00
Chr03	irgsp1_rep	CDS	701952	702053	.	+	0	Parent=Os03t0112101-00
Chr03	irgsp1_rep	CDS	702223	702320	.	+	0	Parent=Os03t0112101-00
Chr03	irgsp1_rep	CDS	702714	702761	.	+	1	Parent=Os03t0112101-00
Chr03	irgsp1_rep	mRNA	706174	708606	.	+	.	ID=Os03t0112400-01;Name=Os03t0112400-01;Locus_id=Os03g0112400;Note=Clathrin/coatomer adaptor%2C adaptin-like%2C appendage%2C C-terminal subdomain domain containing protein.;Transcript_evidence=AK063082 (DDBJ%2C Best hit);ORF_evidence=Q10SS6 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: membrane coat (GO:0030117),Cellular Component: clathrin adaptor complex (GO:0030131);InterPro=Clathrin adaptor%2C alpha-adaptin%2C appendage%2C C-terminal subdomain (IPR003164),Coatomer/calthrin adaptor appendage%2C C-terminal subdomain (IPR009028),Clathrin alpha-adaptin/coatomer adaptor%2C appendage%2C C-terminal subdomain (IPR015873);NIAS_FLcDNA=001-111-A04;Expression=AK063082;TENOR=Os03t0112400-01;KEGG=Os03t0112400-01
Chr03	irgsp1_rep	five_prime_UTR	706174	706175	.	+	.	Parent=Os03t0112400-01
Chr03	irgsp1_rep	CDS	706176	706256	.	+	0	Parent=Os03t0112400-01
Chr03	irgsp1_rep	CDS	706405	706485	.	+	0	Parent=Os03t0112400-01
Chr03	irgsp1_rep	CDS	706572	706643	.	+	0	Parent=Os03t0112400-01
Chr03	irgsp1_rep	CDS	707864	707943	.	+	0	Parent=Os03t0112400-01
Chr03	irgsp1_rep	CDS	708031	708178	.	+	1	Parent=Os03t0112400-01
Chr03	irgsp1_rep	three_prime_UTR	708179	708606	.	+	.	Parent=Os03t0112400-01
Chr03	irgsp1_rep	mRNA	713808	714995	.	+	.	ID=Os03t0112600-00;Name=Os03t0112600-00;Locus_id=Os03g0112600;Note=Similar to Plus-3 domain containing protein%2C expressed.;Transcript_evidence=EU942983 (DDBJ);ORF_evidence=Q7XCX5 (UniProt);GO=Biological Process: transcription initiation%2C DNA-dependent (GO:0006352),Biological Process: histone modification (GO:0016570),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SWIB/MDM2 domain (IPR003121),Plus-3 (IPR004343),Plus-3 domain%2C subgroup (IPR018144),SWIB domain (IPR019835);TENOR=Os03t0112600-00
Chr03	irgsp1_rep	CDS	713808	714995	.	+	0	Parent=Os03t0112600-00
Chr03	irgsp1_rep	mRNA	717839	720374	.	+	.	ID=Os03t0112700-01;Name=Os03t0112700-01;Locus_id=Os03g0112700;CGSNL Gene Symbol=EHD4;CGSNL Gene Name=EARLY HEADING DATE 4;Oryzabase Gene Symbol Synonym(s)=OsC3H20%2C C3H20%2C Ehd4%2C DLN73%2C DLN73a%2C DLN73b%2C OsDLN73%2C OsDLN73a%2C OsDLN73b;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 20%2C Early heading date 4%2C DLN repressor 73%2C DLN motif protein 73;Note=Zinc finger CCCH domain-containing protein;Transcript_evidence=AK112095;ORF_evidence=Q0DVU4;GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=002-107-G01;Manual Curation=November 18%2C 2015;Literature_PMID=18221561;Oryzabase=8584;Expression=AK112095;TENOR=Os03t0112700-01;KEGG=Os03t0112700-01
Chr03	irgsp1_rep	five_prime_UTR	717839	717870	.	+	.	Parent=Os03t0112700-01
Chr03	irgsp1_rep	CDS	717871	719362	.	+	0	Parent=Os03t0112700-01
Chr03	irgsp1_rep	CDS	719465	719598	.	+	2	Parent=Os03t0112700-01
Chr03	irgsp1_rep	CDS	719684	720181	.	+	0	Parent=Os03t0112700-01
Chr03	irgsp1_rep	three_prime_UTR	720182	720374	.	+	.	Parent=Os03t0112700-01
Chr03	irgsp1_rep	mRNA	717447	720837	.	+	.	ID=Os03t0112700-02;Name=Os03t0112700-02;Locus_id=Os03g0112700;RAP-DB Gene Symbol Synonym(s)=EHD4%2C OsC3H20%2C C3H20%2C Ehd4;RAP-DB Gene Name Synonym(s)=EARLY HEADING DATE 4%2C Zinc finger CCCH domain-containing protein 20%2C Early heading date 4;CGSNL Gene Symbol=EHD4;CGSNL Gene Name=EARLY HEADING DATE 4;Oryzabase Gene Symbol Synonym(s)=OsC3H20%2C C3H20%2C Ehd4%2C DLN73%2C DLN73a%2C DLN73b%2C OsDLN73%2C OsDLN73a%2C OsDLN73b;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 20%2C Early heading date 4%2C DLN repressor 73%2C DLN motif protein 73;Note=CCCH-type zinc finger protein%2C Photoperiodic control of flowering time;Transcript_evidence=JQ828863 (Kita-ake);ORF_evidence=J9R5R9;GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C CCCH-type (IPR000571);Manual Curation=November 18%2C 2015;Literature_PMID=23437005,18221561;Oryzabase=8584
Chr03	irgsp1_rep	five_prime_UTR	717447	717498	.	+	.	Parent=Os03t0112700-02
Chr03	irgsp1_rep	CDS	717499	719362	.	+	0	Parent=Os03t0112700-02
Chr03	irgsp1_rep	CDS	719462	719598	.	+	2	Parent=Os03t0112700-02
Chr03	irgsp1_rep	CDS	719684	720181	.	+	0	Parent=Os03t0112700-02
Chr03	irgsp1_rep	three_prime_UTR	720182	720837	.	+	.	Parent=Os03t0112700-02
Chr03	irgsp1_rep	mRNA	721115	725224	.	-	.	ID=Os03t0112800-01;Name=Os03t0112800-01;Locus_id=Os03g0112800;Note=Protein of unknown function DUF726 family protein.;Transcript_evidence=AK100572 (DDBJ%2C Best hit);ORF_evidence=A2XBP3 (UniProt);InterPro=Protein of unknown function DUF726 (IPR007941);NIAS_FLcDNA=J023105E01;Expression=AK100572;TENOR=Os03t0112800-01;KEGG=Os03t0112800-01
Chr03	irgsp1_rep	five_prime_UTR	725160	725224	.	-	.	Parent=Os03t0112800-01
Chr03	irgsp1_rep	CDS	724900	725159	.	-	0	Parent=Os03t0112800-01
Chr03	irgsp1_rep	CDS	724731	724812	.	-	1	Parent=Os03t0112800-01
Chr03	irgsp1_rep	CDS	724112	724540	.	-	0	Parent=Os03t0112800-01
Chr03	irgsp1_rep	CDS	723801	723966	.	-	0	Parent=Os03t0112800-01
Chr03	irgsp1_rep	CDS	723546	723698	.	-	2	Parent=Os03t0112800-01
Chr03	irgsp1_rep	CDS	723109	723206	.	-	2	Parent=Os03t0112800-01
Chr03	irgsp1_rep	CDS	722903	722994	.	-	0	Parent=Os03t0112800-01
Chr03	irgsp1_rep	CDS	722711	722781	.	-	1	Parent=Os03t0112800-01
Chr03	irgsp1_rep	CDS	722503	722638	.	-	2	Parent=Os03t0112800-01
Chr03	irgsp1_rep	CDS	722200	722259	.	-	1	Parent=Os03t0112800-01
Chr03	irgsp1_rep	CDS	722039	722121	.	-	1	Parent=Os03t0112800-01
Chr03	irgsp1_rep	CDS	721865	721941	.	-	2	Parent=Os03t0112800-01
Chr03	irgsp1_rep	CDS	721653	721723	.	-	0	Parent=Os03t0112800-01
Chr03	irgsp1_rep	CDS	721506	721563	.	-	1	Parent=Os03t0112800-01
Chr03	irgsp1_rep	CDS	721272	721421	.	-	0	Parent=Os03t0112800-01
Chr03	irgsp1_rep	three_prime_UTR	721115	721271	.	-	.	Parent=Os03t0112800-01
Chr03	irgsp1_rep	mRNA	726370	728004	.	-	.	ID=Os03t0112900-00;Name=Os03t0112900-00;Locus_id=Os03g0112900;Oryzabase Gene Symbol Synonym(s)=OsF5HL2%2C F5HL2%2C CYP84A6%2C OsCYP84A6%2C OsF5H1%2C F5H1;Oryzabase Gene Name Synonym(s)=Ferulate-5-hydroxylase 2%2C ferule-5-hydroxylase-like 2%2C CytoChrome P450 84A6;Note=Similar to Aldehyde 5-hydroxylase.;Transcript_evidence=AB207253 (DDBJ%2C Best hit);ORF_evidence=B6SWS3 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);Oryzabase=13675;TENOR=Os03t0112900-00;KEGG=Os03t0112900-00 (EC:1.14.-.-)
Chr03	irgsp1_rep	CDS	727078	728004	.	-	0	Parent=Os03t0112900-00
Chr03	irgsp1_rep	CDS	726370	727002	.	-	0	Parent=Os03t0112900-00
Chr03	irgsp1_rep	mRNA	728791	729846	.	-	.	ID=Os03t0112950-01;Name=Os03t0112950-01;Locus_id=Os03g0112950;Note=Non-protein coding transcript.;Transcript_evidence=AK242233 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J075177B17;TENOR=Os03t0112950-01
Chr03	irgsp1_rep	exon	729771	729846	.	-	.	Parent=Os03t0112950-01
Chr03	irgsp1_rep	exon	728791	729326	.	-	.	Parent=Os03t0112950-01
Chr03	irgsp1_rep	mRNA	732546	734247	.	-	.	ID=Os03t0113000-01;Name=Os03t0113000-01;Locus_id=Os03g0113000;CGSNL Gene Symbol=RLCK95;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 95;Oryzabase Gene Symbol Synonym(s)=OsRLCK95;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 95;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK071309 (DDBJ%2C Best hit);ORF_evidence=NP_001151054.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023085P06;Oryzabase=18804;TENOR=Os03t0113000-01
Chr03	irgsp1_rep	five_prime_UTR	734138	734247	.	-	.	Parent=Os03t0113000-01
Chr03	irgsp1_rep	CDS	733759	734137	.	-	0	Parent=Os03t0113000-01
Chr03	irgsp1_rep	CDS	733013	733665	.	-	2	Parent=Os03t0113000-01
Chr03	irgsp1_rep	three_prime_UTR	732546	733012	.	-	.	Parent=Os03t0113000-01
Chr03	irgsp1_rep	mRNA	732488	734214	.	-	.	ID=Os03t0113000-02;Name=Os03t0113000-02;Locus_id=Os03g0113000;CGSNL Gene Symbol=RLCK95;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 95;Oryzabase Gene Symbol Synonym(s)=OsRLCK95;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 95;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK058286 (DDBJ%2C Best hit),AK104314 (DDBJ%2C Best hit);ORF_evidence=NP_001151054.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-013-E01,001-023-A08;Oryzabase=18804;Expression=AK058286;TENOR=Os03t0113000-02;KEGG=Os03t0113000-02
Chr03	irgsp1_rep	five_prime_UTR	734138	734214	.	-	.	Parent=Os03t0113000-02
Chr03	irgsp1_rep	CDS	733759	734137	.	-	0	Parent=Os03t0113000-02
Chr03	irgsp1_rep	CDS	733013	733665	.	-	2	Parent=Os03t0113000-02
Chr03	irgsp1_rep	three_prime_UTR	732488	733012	.	-	.	Parent=Os03t0113000-02
Chr03	irgsp1_rep	mRNA	736183	739765	.	+	.	ID=Os03t0113100-01;Name=Os03t0113100-01;Locus_id=Os03g0113100;Oryzabase Gene Symbol Synonym(s)=TK;Oryzabase Gene Name Synonym(s)=thymidine kinase;Note=Similar to Thymidine kinase.;Transcript_evidence=AK066124 (DDBJ%2C Best hit);ORF_evidence=O81263 (UniProt);GO=Molecular Function: thymidine kinase activity (GO:0004797),Molecular Function: ATP binding (GO:0005524);InterPro=Thymidine kinase (IPR001267),Thymidine kinase%2C conserved site (IPR020633);NIAS_FLcDNA=J013057I21;Oryzabase=13834;Expression=AK066124;TENOR=Os03t0113100-01;KEGG=Os03t0113100-01 (EC:2.7.1.21)
Chr03	irgsp1_rep	five_prime_UTR	736183	736439	.	+	.	Parent=Os03t0113100-01
Chr03	irgsp1_rep	CDS	736440	736744	.	+	0	Parent=Os03t0113100-01
Chr03	irgsp1_rep	CDS	737593	737740	.	+	1	Parent=Os03t0113100-01
Chr03	irgsp1_rep	CDS	738826	738947	.	+	0	Parent=Os03t0113100-01
Chr03	irgsp1_rep	CDS	739315	739573	.	+	1	Parent=Os03t0113100-01
Chr03	irgsp1_rep	three_prime_UTR	739574	739765	.	+	.	Parent=Os03t0113100-01
Chr03	irgsp1_rep	mRNA	736196	739777	.	+	.	ID=Os03t0113100-02;Name=Os03t0113100-02;Locus_id=Os03g0113100;Oryzabase Gene Symbol Synonym(s)=TK;Oryzabase Gene Name Synonym(s)=thymidine kinase;Note=Thymidine kinase family protein.;Transcript_evidence=AK068779 (DDBJ%2C Best hit);ORF_evidence=Q10SR8 (UniProt);GO=Molecular Function: thymidine kinase activity (GO:0004797),Molecular Function: ATP binding (GO:0005524);InterPro=Thymidine kinase (IPR001267),Thymidine kinase%2C conserved site (IPR020633);NIAS_FLcDNA=J013158G10;Oryzabase=13834;Expression=AK068779;TENOR=Os03t0113100-02;KEGG=Os03t0113100-02 (EC:2.7.1.21)
Chr03	irgsp1_rep	five_prime_UTR	736196	736439	.	+	.	Parent=Os03t0113100-02
Chr03	irgsp1_rep	CDS	736440	736744	.	+	0	Parent=Os03t0113100-02
Chr03	irgsp1_rep	CDS	737596	737740	.	+	1	Parent=Os03t0113100-02
Chr03	irgsp1_rep	CDS	738826	738947	.	+	0	Parent=Os03t0113100-02
Chr03	irgsp1_rep	CDS	739315	739573	.	+	1	Parent=Os03t0113100-02
Chr03	irgsp1_rep	three_prime_UTR	739574	739777	.	+	.	Parent=Os03t0113100-02
Chr03	irgsp1_rep	mRNA	740409	743152	.	+	.	ID=Os03t0113200-01;Name=Os03t0113200-01;Locus_id=Os03g0113200;Oryzabase Gene Symbol Synonym(s)=OsFbox126%2C Os_F0788;Oryzabase Gene Name Synonym(s)=F-box protein 126;Note=Protein of unknown function DUF295 family protein.;Transcript_evidence=AK109767 (DDBJ%2C Best hit);ORF_evidence=Q10SR6 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174);NIAS_FLcDNA=002-146-H12;Oryzabase=16917;Expression=AK109767;TENOR=Os03t0113200-01;KEGG=Os03t0113200-01
Chr03	irgsp1_rep	five_prime_UTR	740409	740409	.	+	.	Parent=Os03t0113200-01
Chr03	irgsp1_rep	CDS	740410	741653	.	+	0	Parent=Os03t0113200-01
Chr03	irgsp1_rep	CDS	741744	741816	.	+	1	Parent=Os03t0113200-01
Chr03	irgsp1_rep	CDS	742784	742789	.	+	0	Parent=Os03t0113200-01
Chr03	irgsp1_rep	three_prime_UTR	742790	743152	.	+	.	Parent=Os03t0113200-01
Chr03	irgsp1_rep	mRNA	752025	756172	.	-	.	ID=Os03t0113500-01;Name=Os03t0113500-01;Locus_id=Os03g0113500;Note=Conserved hypothetical protein.;Transcript_evidence=AK241800 (DDBJ%2C Best hit);ORF_evidence=B9FAE9 (UniProt);NIAS_FLcDNA=J065208I24;TENOR=Os03t0113500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	755782	756172	.	-	.	Parent=Os03t0113500-01
Chr03	irgsp1_rep	CDS	755449	755781	.	-	0	Parent=Os03t0113500-01
Chr03	irgsp1_rep	CDS	753321	754748	.	-	0	Parent=Os03t0113500-01
Chr03	irgsp1_rep	three_prime_UTR	753224	753320	.	-	.	Parent=Os03t0113500-01
Chr03	irgsp1_rep	three_prime_UTR	752025	753089	.	-	.	Parent=Os03t0113500-01
Chr03	irgsp1_rep	mRNA	766760	771257	.	-	.	ID=Os03t0113700-01;Name=Os03t0113700-01;Locus_id=Os03g0113700;CGSNL Gene Symbol=ISC24;CGSNL Gene Name=IRON-SULFUR CLUSTER PROTEIN 24;Oryzabase Gene Symbol Synonym(s)=OsISC24%2C HSP70;Oryzabase Gene Name Synonym(s)=Iron-sulfur cluster protein 24%2C heat shock protein Hsp70;Note=Similar to Heat shock 70 kDa protein%2C mitochondrial precursor.;Transcript_evidence=AK103835 (DDBJ%2C Best hit);ORF_evidence=NP_001151739.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: ATP binding (GO:0005524),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein Hsp70 (IPR001023),Chaperone DnaK (IPR012725),Heat shock protein 70 (IPR013126),Heat shock protein 70%2C conserved site (IPR018181);NIAS_FLcDNA=J033148E17;Oryzabase=13436;Expression=AK103835;TENOR=Os03t0113700-01;KEGG=Os03t0113700-01
Chr03	irgsp1_rep	five_prime_UTR	771134	771257	.	-	.	Parent=Os03t0113700-01
Chr03	irgsp1_rep	CDS	771071	771133	.	-	0	Parent=Os03t0113700-01
Chr03	irgsp1_rep	CDS	769913	769986	.	-	0	Parent=Os03t0113700-01
Chr03	irgsp1_rep	CDS	769525	769603	.	-	1	Parent=Os03t0113700-01
Chr03	irgsp1_rep	CDS	768877	769446	.	-	0	Parent=Os03t0113700-01
Chr03	irgsp1_rep	CDS	768147	768767	.	-	0	Parent=Os03t0113700-01
Chr03	irgsp1_rep	CDS	767089	767712	.	-	0	Parent=Os03t0113700-01
Chr03	irgsp1_rep	three_prime_UTR	766760	767088	.	-	.	Parent=Os03t0113700-01
Chr03	irgsp1_rep	mRNA	767037	769609	.	+	.	ID=Os03t0113750-00;Name=Os03t0113750-00;Locus_id=Os03g0113750;Note=Hypothetical protein.;Transcript_evidence=tplb0023b01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0113750-00
Chr03	irgsp1_rep	five_prime_UTR	767037	767701	.	+	.	Parent=Os03t0113750-00
Chr03	irgsp1_rep	five_prime_UTR	768132	768300	.	+	.	Parent=Os03t0113750-00
Chr03	irgsp1_rep	CDS	768301	768756	.	+	0	Parent=Os03t0113750-00
Chr03	irgsp1_rep	CDS	768861	769004	.	+	0	Parent=Os03t0113750-00
Chr03	irgsp1_rep	three_prime_UTR	769005	769443	.	+	.	Parent=Os03t0113750-00
Chr03	irgsp1_rep	three_prime_UTR	769513	769609	.	+	.	Parent=Os03t0113750-00
Chr03	irgsp1_rep	mRNA	771445	776984	.	+	.	ID=Os03t0113800-01;Name=Os03t0113800-01;Locus_id=Os03g0113800;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK065925 (DDBJ%2C Best hit);ORF_evidence=XP_002870606.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013047E20;Expression=AK065925;TENOR=Os03t0113800-01;KEGG=Os03t0113800-01
Chr03	irgsp1_rep	five_prime_UTR	771445	771560	.	+	.	Parent=Os03t0113800-01
Chr03	irgsp1_rep	CDS	771561	771859	.	+	0	Parent=Os03t0113800-01
Chr03	irgsp1_rep	CDS	772893	773012	.	+	1	Parent=Os03t0113800-01
Chr03	irgsp1_rep	CDS	773107	773176	.	+	1	Parent=Os03t0113800-01
Chr03	irgsp1_rep	CDS	773356	773466	.	+	0	Parent=Os03t0113800-01
Chr03	irgsp1_rep	CDS	773691	773774	.	+	0	Parent=Os03t0113800-01
Chr03	irgsp1_rep	CDS	774375	774425	.	+	0	Parent=Os03t0113800-01
Chr03	irgsp1_rep	CDS	774589	774618	.	+	0	Parent=Os03t0113800-01
Chr03	irgsp1_rep	CDS	774719	774781	.	+	0	Parent=Os03t0113800-01
Chr03	irgsp1_rep	CDS	774889	774954	.	+	0	Parent=Os03t0113800-01
Chr03	irgsp1_rep	CDS	775055	775171	.	+	0	Parent=Os03t0113800-01
Chr03	irgsp1_rep	CDS	775611	775646	.	+	0	Parent=Os03t0113800-01
Chr03	irgsp1_rep	CDS	776042	776161	.	+	0	Parent=Os03t0113800-01
Chr03	irgsp1_rep	CDS	776299	776469	.	+	0	Parent=Os03t0113800-01
Chr03	irgsp1_rep	CDS	776638	776748	.	+	0	Parent=Os03t0113800-01
Chr03	irgsp1_rep	three_prime_UTR	776749	776984	.	+	.	Parent=Os03t0113800-01
Chr03	irgsp1_rep	mRNA	781076	781879	.	+	.	ID=Os03t0113900-02;Name=Os03t0113900-02;Locus_id=Os03g0113900;RAP-DB Gene Symbol Synonym(s)=OsS40-4;RAP-DB Gene Name Synonym(s)=S40 protein 4;CGSNL Gene Symbol=S40-4;CGSNL Gene Name=S40 PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OsS40-4;Oryzabase Gene Name Synonym(s)=S40 protein 4;Note=A member of S40 gene family%2C Leaf senescence%2C Response to pathogen infection;Transcript_evidence=AK107900,AK119700;ORF_evidence=Q8GZX5;InterPro=Senescence regulator S40 (IPR007608);NIAS_FLcDNA=002-134-F07,002-157-D07;Manual Curation=November 8%2C 2019;Literature_PMID=31046677;Oryzabase=22074;Expression=AK107900;TENOR=Os03t0113900-02;KEGG=Os03t0113900-02
Chr03	irgsp1_rep	five_prime_UTR	781076	781184	.	+	.	Parent=Os03t0113900-02
Chr03	irgsp1_rep	CDS	781185	781778	.	+	0	Parent=Os03t0113900-02
Chr03	irgsp1_rep	three_prime_UTR	781779	781879	.	+	.	Parent=Os03t0113900-02
Chr03	irgsp1_rep	mRNA	788208	791569	.	+	.	ID=Os03t0114000-01;Name=Os03t0114000-01;Locus_id=Os03g0114000;Note=Similar to Kinesin.;Transcript_evidence=AK063381 (DDBJ%2C Best hit);ORF_evidence=NP_179846.2 (RefSeq);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752),Kinesin%2C motor region%2C conserved site (IPR019821);NIAS_FLcDNA=001-114-G02;Expression=AK063381;TENOR=Os03t0114000-01;KEGG=Os03t0114000-01
Chr03	irgsp1_rep	five_prime_UTR	788208	788209	.	+	.	Parent=Os03t0114000-01
Chr03	irgsp1_rep	CDS	788210	788336	.	+	0	Parent=Os03t0114000-01
Chr03	irgsp1_rep	CDS	788502	788775	.	+	2	Parent=Os03t0114000-01
Chr03	irgsp1_rep	CDS	788856	789017	.	+	1	Parent=Os03t0114000-01
Chr03	irgsp1_rep	CDS	789105	789320	.	+	1	Parent=Os03t0114000-01
Chr03	irgsp1_rep	CDS	789399	789436	.	+	1	Parent=Os03t0114000-01
Chr03	irgsp1_rep	CDS	789594	789757	.	+	2	Parent=Os03t0114000-01
Chr03	irgsp1_rep	CDS	789869	789994	.	+	0	Parent=Os03t0114000-01
Chr03	irgsp1_rep	CDS	790070	790195	.	+	0	Parent=Os03t0114000-01
Chr03	irgsp1_rep	CDS	790297	790350	.	+	0	Parent=Os03t0114000-01
Chr03	irgsp1_rep	CDS	790444	790506	.	+	0	Parent=Os03t0114000-01
Chr03	irgsp1_rep	CDS	790734	790796	.	+	0	Parent=Os03t0114000-01
Chr03	irgsp1_rep	CDS	790887	791387	.	+	0	Parent=Os03t0114000-01
Chr03	irgsp1_rep	three_prime_UTR	791388	791569	.	+	.	Parent=Os03t0114000-01
Chr03	irgsp1_rep	mRNA	793552	794489	.	+	.	ID=Os03t0114100-01;Name=Os03t0114100-01;Locus_id=Os03g0114100;Note=Conserved hypothetical protein.;Transcript_evidence=AK108265 (DDBJ%2C Best hit);ORF_evidence=B8ALY5 (UniProt);NIAS_FLcDNA=002-141-B09;TENOR=Os03t0114100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	793552	793612	.	+	.	Parent=Os03t0114100-01
Chr03	irgsp1_rep	CDS	793613	793661	.	+	0	Parent=Os03t0114100-01
Chr03	irgsp1_rep	CDS	793686	793780	.	+	2	Parent=Os03t0114100-01
Chr03	irgsp1_rep	CDS	794137	794169	.	+	0	Parent=Os03t0114100-01
Chr03	irgsp1_rep	three_prime_UTR	794170	794489	.	+	.	Parent=Os03t0114100-01
Chr03	irgsp1_rep	mRNA	795385	798116	.	-	.	ID=Os03t0114200-01;Name=Os03t0114200-01;Locus_id=Os03g0114200;Note=Nucleic acid-binding%2C OB-fold domain containing protein.;Transcript_evidence=AK107914 (DDBJ%2C Best hit);ORF_evidence=NP_001149105.1 (RefSeq);GO=Biological Process: translational initiation (GO:0006413),Molecular Function: RNA binding (GO:0003723),Molecular Function: translation initiation factor activity (GO:0003743);InterPro=Translation initiation factor 1A (eIF-1A) (IPR001253),RNA-binding domain%2C S1%2C IF1 type (IPR006196),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=002-134-G09;Expression=AK107914;TENOR=Os03t0114200-01;KEGG=Os03t0114200-01
Chr03	irgsp1_rep	five_prime_UTR	797977	798116	.	-	.	Parent=Os03t0114200-01
Chr03	irgsp1_rep	CDS	797863	797976	.	-	0	Parent=Os03t0114200-01
Chr03	irgsp1_rep	CDS	797668	797743	.	-	0	Parent=Os03t0114200-01
Chr03	irgsp1_rep	CDS	797431	797557	.	-	2	Parent=Os03t0114200-01
Chr03	irgsp1_rep	CDS	795613	795799	.	-	1	Parent=Os03t0114200-01
Chr03	irgsp1_rep	three_prime_UTR	795385	795612	.	-	.	Parent=Os03t0114200-01
Chr03	irgsp1_rep	mRNA	800033	809279	.	+	.	ID=Os03t0114300-01;Name=Os03t0114300-01;Locus_id=Os03g0114300;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK121970 (DDBJ%2C Best hit);ORF_evidence=NP_001151918.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033108H17;Expression=AK121970;TENOR=Os03t0114300-01;KEGG=Os03t0114300-01
Chr03	irgsp1_rep	five_prime_UTR	800033	800175	.	+	.	Parent=Os03t0114300-01
Chr03	irgsp1_rep	CDS	800176	800391	.	+	0	Parent=Os03t0114300-01
Chr03	irgsp1_rep	CDS	801176	801430	.	+	0	Parent=Os03t0114300-01
Chr03	irgsp1_rep	CDS	801501	801625	.	+	0	Parent=Os03t0114300-01
Chr03	irgsp1_rep	CDS	801719	801763	.	+	1	Parent=Os03t0114300-01
Chr03	irgsp1_rep	CDS	802205	802284	.	+	1	Parent=Os03t0114300-01
Chr03	irgsp1_rep	CDS	802744	802814	.	+	2	Parent=Os03t0114300-01
Chr03	irgsp1_rep	CDS	802930	803100	.	+	0	Parent=Os03t0114300-01
Chr03	irgsp1_rep	CDS	803188	803253	.	+	0	Parent=Os03t0114300-01
Chr03	irgsp1_rep	CDS	803990	804058	.	+	0	Parent=Os03t0114300-01
Chr03	irgsp1_rep	CDS	804188	804256	.	+	0	Parent=Os03t0114300-01
Chr03	irgsp1_rep	CDS	804648	804706	.	+	0	Parent=Os03t0114300-01
Chr03	irgsp1_rep	CDS	804963	805244	.	+	1	Parent=Os03t0114300-01
Chr03	irgsp1_rep	CDS	805750	805883	.	+	1	Parent=Os03t0114300-01
Chr03	irgsp1_rep	CDS	806067	806161	.	+	2	Parent=Os03t0114300-01
Chr03	irgsp1_rep	CDS	806255	806299	.	+	0	Parent=Os03t0114300-01
Chr03	irgsp1_rep	CDS	806410	806469	.	+	0	Parent=Os03t0114300-01
Chr03	irgsp1_rep	CDS	806996	807097	.	+	0	Parent=Os03t0114300-01
Chr03	irgsp1_rep	CDS	807203	807254	.	+	0	Parent=Os03t0114300-01
Chr03	irgsp1_rep	CDS	807329	807369	.	+	2	Parent=Os03t0114300-01
Chr03	irgsp1_rep	CDS	807512	807576	.	+	0	Parent=Os03t0114300-01
Chr03	irgsp1_rep	CDS	808359	808410	.	+	1	Parent=Os03t0114300-01
Chr03	irgsp1_rep	CDS	808676	808747	.	+	0	Parent=Os03t0114300-01
Chr03	irgsp1_rep	three_prime_UTR	808748	809279	.	+	.	Parent=Os03t0114300-01
Chr03	irgsp1_rep	mRNA	803639	809256	.	+	.	ID=Os03t0114300-02;Name=Os03t0114300-02;Locus_id=Os03g0114300;Note=Similar to ATP binding protein.;Transcript_evidence=AK121729 (DDBJ%2C Best hit);ORF_evidence=NP_001151918.1 (RefSeq);NIAS_FLcDNA=J033082D12;Expression=AK121729;TENOR=Os03t0114300-02;KEGG=Os03t0114300-02
Chr03	irgsp1_rep	five_prime_UTR	803639	803989	.	+	.	Parent=Os03t0114300-02
Chr03	irgsp1_rep	CDS	803990	804058	.	+	0	Parent=Os03t0114300-02
Chr03	irgsp1_rep	CDS	804188	804256	.	+	0	Parent=Os03t0114300-02
Chr03	irgsp1_rep	CDS	804648	804706	.	+	0	Parent=Os03t0114300-02
Chr03	irgsp1_rep	CDS	804963	805244	.	+	1	Parent=Os03t0114300-02
Chr03	irgsp1_rep	CDS	805750	805883	.	+	1	Parent=Os03t0114300-02
Chr03	irgsp1_rep	CDS	806067	806161	.	+	2	Parent=Os03t0114300-02
Chr03	irgsp1_rep	CDS	806255	806299	.	+	0	Parent=Os03t0114300-02
Chr03	irgsp1_rep	CDS	806410	806469	.	+	0	Parent=Os03t0114300-02
Chr03	irgsp1_rep	CDS	806996	807097	.	+	0	Parent=Os03t0114300-02
Chr03	irgsp1_rep	CDS	807203	807254	.	+	0	Parent=Os03t0114300-02
Chr03	irgsp1_rep	CDS	807329	807369	.	+	2	Parent=Os03t0114300-02
Chr03	irgsp1_rep	CDS	807512	807576	.	+	0	Parent=Os03t0114300-02
Chr03	irgsp1_rep	CDS	808359	808410	.	+	1	Parent=Os03t0114300-02
Chr03	irgsp1_rep	CDS	808676	808747	.	+	0	Parent=Os03t0114300-02
Chr03	irgsp1_rep	three_prime_UTR	808748	809256	.	+	.	Parent=Os03t0114300-02
Chr03	irgsp1_rep	mRNA	812826	814725	.	-	.	ID=Os03t0114400-01;Name=Os03t0114400-01;Locus_id=Os03g0114400;Note=Similar to Avr9/Cf-9 rapidly elicited protein 102 (Fragment).;Transcript_evidence=AK108730 (DDBJ%2C Best hit);ORF_evidence=NP_001150338.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959);NIAS_FLcDNA=002-150-D02;Expression=AK108730;TENOR=Os03t0114400-01;KEGG=Os03t0114400-01
Chr03	irgsp1_rep	five_prime_UTR	814652	814725	.	-	.	Parent=Os03t0114400-01
Chr03	irgsp1_rep	CDS	813080	814651	.	-	0	Parent=Os03t0114400-01
Chr03	irgsp1_rep	three_prime_UTR	812826	813079	.	-	.	Parent=Os03t0114400-01
Chr03	irgsp1_rep	mRNA	813099	814739	.	+	.	ID=Os03t0114550-00;Name=Os03t0114550-00;Locus_id=Os03g0114550;Note=Hypothetical protein.;Transcript_evidence=AK359252 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0114550-00
Chr03	irgsp1_rep	five_prime_UTR	813099	813496	.	+	.	Parent=Os03t0114550-00
Chr03	irgsp1_rep	CDS	813497	814681	.	+	0	Parent=Os03t0114550-00
Chr03	irgsp1_rep	three_prime_UTR	814682	814739	.	+	.	Parent=Os03t0114550-00
Chr03	irgsp1_rep	mRNA	837760	841532	.	-	.	ID=Os03t0114700-01;Name=Os03t0114700-01;Locus_id=Os03g0114700;Note=Non-protein coding transcript.;Transcript_evidence=AK070345 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023053N02;TENOR=Os03t0114700-01
Chr03	irgsp1_rep	exon	841313	841532	.	-	.	Parent=Os03t0114700-01
Chr03	irgsp1_rep	exon	839434	839664	.	-	.	Parent=Os03t0114700-01
Chr03	irgsp1_rep	exon	837760	838135	.	-	.	Parent=Os03t0114700-01
Chr03	irgsp1_rep	mRNA	842577	846401	.	+	.	ID=Os03t0114800-01;Name=Os03t0114800-01;Locus_id=Os03g0114800;RAP-DB Gene Symbol Synonym(s)=OsCd1;CGSNL Gene Symbol=CD1;Oryzabase Gene Symbol Synonym(s)=OsCd1;Note=Major facilitator superfamily protein%2C Cd uptake%2C Grain Cd accumulation;Transcript_evidence=AK065394;ORF_evidence=Q8GZW6;GO=Biological Process: molybdate ion transport (GO:0015689),Molecular Function: molybdate ion transmembrane transporter activity (GO:0015098),Cellular Component: integral component of membrane (GO:0016021);InterPro=MFS transporter superfamily (IPR036259),Molybdate-anion transporter (IPR008509),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J013023A12;Manual Curation=July 8%2C 2019;Literature_PMID=31189898;Oryzabase=23102;Expression=AK065394;TENOR=Os03t0114800-01;KEGG=Os03t0114800-01;Subcellular location=plasma membrane (GO:0005886)
Chr03	irgsp1_rep	five_prime_UTR	842577	842777	.	+	.	Parent=Os03t0114800-01
Chr03	irgsp1_rep	CDS	842778	842928	.	+	0	Parent=Os03t0114800-01
Chr03	irgsp1_rep	CDS	843006	843150	.	+	2	Parent=Os03t0114800-01
Chr03	irgsp1_rep	CDS	843237	843405	.	+	1	Parent=Os03t0114800-01
Chr03	irgsp1_rep	CDS	844801	845071	.	+	0	Parent=Os03t0114800-01
Chr03	irgsp1_rep	CDS	845164	845426	.	+	2	Parent=Os03t0114800-01
Chr03	irgsp1_rep	CDS	845507	845722	.	+	0	Parent=Os03t0114800-01
Chr03	irgsp1_rep	CDS	845809	845923	.	+	0	Parent=Os03t0114800-01
Chr03	irgsp1_rep	CDS	846022	846065	.	+	2	Parent=Os03t0114800-01
Chr03	irgsp1_rep	three_prime_UTR	846066	846401	.	+	.	Parent=Os03t0114800-01
Chr03	irgsp1_rep	mRNA	844808	846408	.	+	.	ID=Os03t0114800-02;Name=Os03t0114800-02;Locus_id=Os03g0114800;CGSNL Gene Symbol=CD1;Oryzabase Gene Symbol Synonym(s)=OsCd1;Note=Similar to Major Facilitator superfamily protein.;Transcript_evidence=AK060853 (DDBJ%2C Best hit);ORF_evidence=B6TBQ0 (UniProt);InterPro=Protein of unknown function DUF791 (IPR008509),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=001-034-E12;Oryzabase=23102;Expression=AK060853;TENOR=Os03t0114800-02;KEGG=Os03t0114800-02
Chr03	irgsp1_rep	five_prime_UTR	844808	844809	.	+	.	Parent=Os03t0114800-02
Chr03	irgsp1_rep	CDS	844810	845071	.	+	0	Parent=Os03t0114800-02
Chr03	irgsp1_rep	CDS	845164	845426	.	+	2	Parent=Os03t0114800-02
Chr03	irgsp1_rep	CDS	845507	845722	.	+	0	Parent=Os03t0114800-02
Chr03	irgsp1_rep	CDS	845809	845923	.	+	0	Parent=Os03t0114800-02
Chr03	irgsp1_rep	CDS	846022	846065	.	+	2	Parent=Os03t0114800-02
Chr03	irgsp1_rep	three_prime_UTR	846066	846408	.	+	.	Parent=Os03t0114800-02
Chr03	irgsp1_rep	mRNA	845255	845921	.	-	.	ID=Os03t0114850-00;Name=Os03t0114850-00;Locus_id=Os03g0114850;Note=Non-protein coding transcript.;Transcript_evidence=BT063951 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0114850-00
Chr03	irgsp1_rep	exon	845829	845921	.	-	.	Parent=Os03t0114850-00
Chr03	irgsp1_rep	exon	845521	845747	.	-	.	Parent=Os03t0114850-00
Chr03	irgsp1_rep	exon	845255	845438	.	-	.	Parent=Os03t0114850-00
Chr03	irgsp1_rep	mRNA	848054	849141	.	-	.	ID=Os03t0114900-01;Name=Os03t0114900-01;Locus_id=Os03g0114900;Note=Similar to putaive mitochondrial inner membrane protein [Oryza sativa (japonica cultivar-group)].;Transcript_evidence=AK103851 (DDBJ%2C Best hit);ORF_evidence=B6SJS3 (UniProt);InterPro=Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 (IPR003397);NIAS_FLcDNA=J033148L11;Expression=AK103851;TENOR=Os03t0114900-01;KEGG=Os03t0114900-01
Chr03	irgsp1_rep	five_prime_UTR	849067	849141	.	-	.	Parent=Os03t0114900-01
Chr03	irgsp1_rep	CDS	848482	849066	.	-	0	Parent=Os03t0114900-01
Chr03	irgsp1_rep	three_prime_UTR	848054	848481	.	-	.	Parent=Os03t0114900-01
Chr03	irgsp1_rep	mRNA	848477	849095	.	+	.	ID=Os03t0114950-00;Name=Os03t0114950-00;Locus_id=Os03g0114950;Note=Hypothetical gene.;Transcript_evidence=EU944584 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0114950-00
Chr03	irgsp1_rep	five_prime_UTR	848477	848478	.	+	.	Parent=Os03t0114950-00
Chr03	irgsp1_rep	CDS	848479	848560	.	+	0	Parent=Os03t0114950-00
Chr03	irgsp1_rep	CDS	848660	849095	.	+	2	Parent=Os03t0114950-00
Chr03	irgsp1_rep	mRNA	850769	851768	.	+	.	ID=Os03t0115000-01;Name=Os03t0115000-01;Locus_id=Os03g0115000;CGSNL Gene Symbol=ENODL10;CGSNL Gene Name=EARLY NODULIN LIKE PROTEIN 10;Oryzabase Gene Symbol Synonym(s)=OsENODL10;Oryzabase Gene Name Synonym(s)=early nodulin-like protein 10;Note=Cupredoxin domain containing protein.;Transcript_evidence=AK107855 (DDBJ%2C Best hit);ORF_evidence=NP_001150504.1 (RefSeq);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);NIAS_FLcDNA=002-134-B01;Oryzabase=9735;Expression=AK107855;TENOR=Os03t0115000-01;KEGG=Os03t0115000-01
Chr03	irgsp1_rep	five_prime_UTR	850769	850770	.	+	.	Parent=Os03t0115000-01
Chr03	irgsp1_rep	CDS	850771	850957	.	+	0	Parent=Os03t0115000-01
Chr03	irgsp1_rep	CDS	851190	851593	.	+	2	Parent=Os03t0115000-01
Chr03	irgsp1_rep	three_prime_UTR	851594	851768	.	+	.	Parent=Os03t0115000-01
Chr03	irgsp1_rep	mRNA	852383	857144	.	-	.	ID=Os03t0115100-01;Name=Os03t0115100-01;Locus_id=Os03g0115100;Note=Mevalonate and galactokinase family protein.;Transcript_evidence=AK121101 (DDBJ%2C Best hit);ORF_evidence=NP_563620.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Biological Process: phosphorylation (GO:0016310),Cellular Component: cytoplasm (GO:0005737),Molecular Function: ATP binding (GO:0005524),Molecular Function: kinase activity (GO:0016301),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=GHMP kinase (IPR006204),Mevalonate/galactokinase (IPR006206),L-fucokinase (IPR012887),GHMP kinase%2C C-terminal (IPR013750),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=J023069I12;Expression=AK121101;TENOR=Os03t0115100-01;KEGG=Os03t0115100-01
Chr03	irgsp1_rep	five_prime_UTR	857122	857144	.	-	.	Parent=Os03t0115100-01
Chr03	irgsp1_rep	CDS	856792	857121	.	-	0	Parent=Os03t0115100-01
Chr03	irgsp1_rep	CDS	856435	856714	.	-	0	Parent=Os03t0115100-01
Chr03	irgsp1_rep	CDS	855997	856364	.	-	2	Parent=Os03t0115100-01
Chr03	irgsp1_rep	CDS	855225	855351	.	-	0	Parent=Os03t0115100-01
Chr03	irgsp1_rep	CDS	854023	855042	.	-	2	Parent=Os03t0115100-01
Chr03	irgsp1_rep	CDS	853166	853860	.	-	2	Parent=Os03t0115100-01
Chr03	irgsp1_rep	CDS	852539	852937	.	-	0	Parent=Os03t0115100-01
Chr03	irgsp1_rep	three_prime_UTR	852383	852538	.	-	.	Parent=Os03t0115100-01
Chr03	irgsp1_rep	mRNA	852400	854705	.	-	.	ID=Os03t0115100-02;Name=Os03t0115100-02;Locus_id=Os03g0115100;Note=Similar to GHMP kinase-related.;Transcript_evidence=AK071945 (DDBJ%2C Best hit);ORF_evidence=NP_563620.1 (RefSeq);GO=Biological Process: phosphorylation (GO:0016310),Molecular Function: ATP binding (GO:0005524),Molecular Function: kinase activity (GO:0016301),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=GHMP kinase (IPR006204),L-fucokinase (IPR012887),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=J013083G13;Expression=AK071945;TENOR=Os03t0115100-02;KEGG=Os03t0115100-02
Chr03	irgsp1_rep	five_prime_UTR	854705	854705	.	-	.	Parent=Os03t0115100-02
Chr03	irgsp1_rep	CDS	854023	854704	.	-	0	Parent=Os03t0115100-02
Chr03	irgsp1_rep	CDS	853142	853860	.	-	2	Parent=Os03t0115100-02
Chr03	irgsp1_rep	three_prime_UTR	852400	853141	.	-	.	Parent=Os03t0115100-02
Chr03	irgsp1_rep	mRNA	857832	859757	.	-	.	ID=Os03t0115200-01;Name=Os03t0115200-01;Locus_id=Os03g0115200;Note=Similar to Partner of Nob1%3B Pno1p%3B Yor145cp like KH domain containing protein%2C transcripts identified by EST.;Transcript_evidence=AK071287 (DDBJ%2C Best hit);ORF_evidence=NP_001149708.1 (RefSeq);GO=Molecular Function: RNA binding (GO:0003723);InterPro=K Homology (IPR004087),K Homology%2C type 1%2C subgroup (IPR018111);NIAS_FLcDNA=J023088J06;Expression=AK071287;TENOR=Os03t0115200-01;KEGG=Os03t0115200-01
Chr03	irgsp1_rep	five_prime_UTR	859656	859757	.	-	.	Parent=Os03t0115200-01
Chr03	irgsp1_rep	CDS	859395	859655	.	-	0	Parent=Os03t0115200-01
Chr03	irgsp1_rep	CDS	858002	858424	.	-	0	Parent=Os03t0115200-01
Chr03	irgsp1_rep	three_prime_UTR	857832	858001	.	-	.	Parent=Os03t0115200-01
Chr03	irgsp1_rep	mRNA	861320	862938	.	-	.	ID=Os03t0115300-00;Name=Os03t0115300-00;Locus_id=Os03g0115300;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=tplb0056b15 (Wheat FLcDNA);ORF_evidence=NP_001048751.1 (RefSeq);InterPro=Pentatricopeptide repeat (IPR002885);TENOR=Os03t0115300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	862868	862938	.	-	.	Parent=Os03t0115300-00
Chr03	irgsp1_rep	CDS	862556	862867	.	-	0	Parent=Os03t0115300-00
Chr03	irgsp1_rep	CDS	861320	862480	.	-	0	Parent=Os03t0115300-00
Chr03	irgsp1_rep	mRNA	870492	871841	.	-	.	ID=Os03t0115350-01;Name=Os03t0115350-01;Locus_id=Os03g0115350;Note=Hypothetical gene.;Transcript_evidence=AK287618 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065065J21;TENOR=Os03t0115350-01;KEGG=Os03t0115350-01
Chr03	irgsp1_rep	five_prime_UTR	871297	871841	.	-	.	Parent=Os03t0115350-01
Chr03	irgsp1_rep	CDS	870877	871296	.	-	0	Parent=Os03t0115350-01
Chr03	irgsp1_rep	three_prime_UTR	870492	870876	.	-	.	Parent=Os03t0115350-01
Chr03	irgsp1_rep	mRNA	870844	875516	.	+	.	ID=Os03t0115400-01;Name=Os03t0115400-01;Locus_id=Os03g0115400;Oryzabase Gene Symbol Synonym(s)=OsWD40-60;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK103522 (DDBJ%2C Best hit),AK103356 (DDBJ%2C Best hit);ORF_evidence=NP_001147943.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J033131K03,J033126K20;Oryzabase=10741;Expression=AK103522;TENOR=Os03t0115400-01;KEGG=Os03t0115400-01
Chr03	irgsp1_rep	five_prime_UTR	870844	871134	.	+	.	Parent=Os03t0115400-01
Chr03	irgsp1_rep	CDS	871135	872307	.	+	0	Parent=Os03t0115400-01
Chr03	irgsp1_rep	CDS	872400	872490	.	+	0	Parent=Os03t0115400-01
Chr03	irgsp1_rep	CDS	872581	872738	.	+	2	Parent=Os03t0115400-01
Chr03	irgsp1_rep	CDS	872835	872886	.	+	0	Parent=Os03t0115400-01
Chr03	irgsp1_rep	CDS	874028	874107	.	+	2	Parent=Os03t0115400-01
Chr03	irgsp1_rep	CDS	874195	874288	.	+	0	Parent=Os03t0115400-01
Chr03	irgsp1_rep	CDS	874366	874958	.	+	2	Parent=Os03t0115400-01
Chr03	irgsp1_rep	three_prime_UTR	874959	875516	.	+	.	Parent=Os03t0115400-01
Chr03	irgsp1_rep	mRNA	878854	881449	.	+	.	ID=Os03t0115500-01;Name=Os03t0115500-01;Locus_id=Os03g0115500;Note=Similar to pyridoxine 5'-phosphate oxidase-related.;Transcript_evidence=AK068891 (DDBJ%2C Best hit);ORF_evidence=NP_566081.1 (RefSeq);GO=Biological Process: pyridoxine biosynthetic process (GO:0008615),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: pyridoxamine-phosphate oxidase activity (GO:0004733),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Pyridoxamine 5&apos%3B-phosphate oxidase (IPR000659),FMN-binding split barrel-related (IPR009002),FMN-binding split barrel (IPR012349),Pyridoxamine 5&apos%3B-phosphate oxidase%2C probable FMN-dependent%2C Alr4036 family (IPR024015),Pyridoxamine 5&apos%3B-phosphate oxidase%2C Alr4036 family%2C FMN-binding domain (IPR024624);NIAS_FLcDNA=J023002H17;TENOR=Os03t0115500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	878854	878916	.	+	.	Parent=Os03t0115500-01
Chr03	irgsp1_rep	CDS	878917	879027	.	+	0	Parent=Os03t0115500-01
Chr03	irgsp1_rep	CDS	879103	879152	.	+	0	Parent=Os03t0115500-01
Chr03	irgsp1_rep	CDS	879232	879289	.	+	1	Parent=Os03t0115500-01
Chr03	irgsp1_rep	CDS	879406	879438	.	+	0	Parent=Os03t0115500-01
Chr03	irgsp1_rep	CDS	879556	879651	.	+	0	Parent=Os03t0115500-01
Chr03	irgsp1_rep	CDS	880090	880257	.	+	0	Parent=Os03t0115500-01
Chr03	irgsp1_rep	CDS	880375	880476	.	+	0	Parent=Os03t0115500-01
Chr03	irgsp1_rep	three_prime_UTR	880477	880526	.	+	.	Parent=Os03t0115500-01
Chr03	irgsp1_rep	three_prime_UTR	881045	881449	.	+	.	Parent=Os03t0115500-01
Chr03	irgsp1_rep	mRNA	878857	881431	.	+	.	ID=Os03t0115500-02;Name=Os03t0115500-02;Locus_id=Os03g0115500;Note=FMN-binding split barrel-related domain containing protein.;Transcript_evidence=AK119615 (DDBJ%2C Best hit);ORF_evidence=Q10SP1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FMN-binding split barrel-related (IPR009002),FMN-binding split barrel (IPR012349),Pyridoxamine 5'-phosphate oxidase%2C Alr4036 family%2C FMN-binding domain (IPR024624);NIAS_FLcDNA=002-117-G07;TENOR=Os03t0115500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	878857	878916	.	+	.	Parent=Os03t0115500-02
Chr03	irgsp1_rep	CDS	878917	879027	.	+	0	Parent=Os03t0115500-02
Chr03	irgsp1_rep	CDS	879103	879152	.	+	0	Parent=Os03t0115500-02
Chr03	irgsp1_rep	CDS	879232	879301	.	+	1	Parent=Os03t0115500-02
Chr03	irgsp1_rep	three_prime_UTR	879302	879651	.	+	.	Parent=Os03t0115500-02
Chr03	irgsp1_rep	three_prime_UTR	880090	880257	.	+	.	Parent=Os03t0115500-02
Chr03	irgsp1_rep	three_prime_UTR	880375	881431	.	+	.	Parent=Os03t0115500-02
Chr03	irgsp1_rep	mRNA	884706	886943	.	-	.	ID=Os03t0115700-01;Name=Os03t0115700-01;Locus_id=Os03g0115700;Note=Short-chain dehydrogenase/reductase SDR family protein.;Transcript_evidence=AK067473 (DDBJ%2C Best hit);ORF_evidence=NP_001152242.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013107I12;Expression=AK067473;TENOR=Os03t0115700-01;KEGG=Os03t0115700-01
Chr03	irgsp1_rep	five_prime_UTR	886802	886943	.	-	.	Parent=Os03t0115700-01
Chr03	irgsp1_rep	CDS	886687	886801	.	-	0	Parent=Os03t0115700-01
Chr03	irgsp1_rep	CDS	886379	886610	.	-	2	Parent=Os03t0115700-01
Chr03	irgsp1_rep	CDS	886156	886238	.	-	1	Parent=Os03t0115700-01
Chr03	irgsp1_rep	CDS	885919	886075	.	-	2	Parent=Os03t0115700-01
Chr03	irgsp1_rep	CDS	885733	885814	.	-	1	Parent=Os03t0115700-01
Chr03	irgsp1_rep	CDS	885548	885635	.	-	0	Parent=Os03t0115700-01
Chr03	irgsp1_rep	CDS	885404	885450	.	-	2	Parent=Os03t0115700-01
Chr03	irgsp1_rep	CDS	885036	885230	.	-	0	Parent=Os03t0115700-01
Chr03	irgsp1_rep	three_prime_UTR	884706	885035	.	-	.	Parent=Os03t0115700-01
Chr03	irgsp1_rep	mRNA	887193	888623	.	-	.	ID=Os03t0115800-01;Name=Os03t0115800-01;Locus_id=Os03g0115800;Note=Conserved hypothetical protein.;Transcript_evidence=AK102606 (DDBJ%2C Best hit);ORF_evidence=B9FAG0 (UniProt);NIAS_FLcDNA=J033098P07;Oryzabase=22069;TENOR=Os03t0115800-01
Chr03	irgsp1_rep	five_prime_UTR	888396	888623	.	-	.	Parent=Os03t0115800-01
Chr03	irgsp1_rep	CDS	887745	888395	.	-	0	Parent=Os03t0115800-01
Chr03	irgsp1_rep	three_prime_UTR	887193	887744	.	-	.	Parent=Os03t0115800-01
Chr03	irgsp1_rep	mRNA	887193	888473	.	-	.	ID=Os03t0115800-02;Name=Os03t0115800-02;Locus_id=Os03g0115800;Note=Conserved hypothetical protein.;Transcript_evidence=AK063981 (DDBJ%2C Best hit);ORF_evidence=B9FAG0 (UniProt);NIAS_FLcDNA=001-124-D04;Oryzabase=22069;TENOR=Os03t0115800-02
Chr03	irgsp1_rep	five_prime_UTR	888396	888473	.	-	.	Parent=Os03t0115800-02
Chr03	irgsp1_rep	CDS	887745	888395	.	-	0	Parent=Os03t0115800-02
Chr03	irgsp1_rep	three_prime_UTR	887193	887744	.	-	.	Parent=Os03t0115800-02
Chr03	irgsp1_rep	mRNA	906127	909697	.	+	.	ID=Os03t0116000-00;Name=Os03t0116000-00;Locus_id=Os03g0116000;Note=Similar to 60Kd inner membrane protein%2C expressed.;Transcript_evidence=AK333486 (DDBJ);ORF_evidence=Q10SN8 (UniProt);GO=Biological Process: protein insertion into membrane (GO:0051205),Cellular Component: integral to membrane (GO:0016021);InterPro=Membrane insertion protein%2C OxaA/YidC (IPR001708);TENOR=Os03t0116000-00;KEGG=Os03t0116000-00
Chr03	irgsp1_rep	five_prime_UTR	906127	906155	.	+	.	Parent=Os03t0116000-00
Chr03	irgsp1_rep	CDS	906156	906625	.	+	0	Parent=Os03t0116000-00
Chr03	irgsp1_rep	CDS	906724	906814	.	+	1	Parent=Os03t0116000-00
Chr03	irgsp1_rep	CDS	907185	907229	.	+	0	Parent=Os03t0116000-00
Chr03	irgsp1_rep	CDS	908017	908075	.	+	0	Parent=Os03t0116000-00
Chr03	irgsp1_rep	CDS	908281	908356	.	+	1	Parent=Os03t0116000-00
Chr03	irgsp1_rep	CDS	908480	908611	.	+	0	Parent=Os03t0116000-00
Chr03	irgsp1_rep	CDS	908701	908808	.	+	0	Parent=Os03t0116000-00
Chr03	irgsp1_rep	CDS	909334	909388	.	+	0	Parent=Os03t0116000-00
Chr03	irgsp1_rep	CDS	909477	909697	.	+	2	Parent=Os03t0116000-00
Chr03	irgsp1_rep	mRNA	922684	928190	.	+	.	ID=Os03t0116300-01;Name=Os03t0116300-01;Locus_id=Os03g0116300;Note=Similar to catalytic/ hydrolase.;Transcript_evidence=AK243247 (DDBJ%2C Best hit),AK243117 (DDBJ%2C Best hit);ORF_evidence=Q10SN5 (UniProt);NIAS_FLcDNA=J100047K06,J100028A19;TENOR=Os03t0116300-01
Chr03	irgsp1_rep	five_prime_UTR	922684	922775	.	+	.	Parent=Os03t0116300-01
Chr03	irgsp1_rep	CDS	922776	923087	.	+	0	Parent=Os03t0116300-01
Chr03	irgsp1_rep	CDS	926918	927129	.	+	0	Parent=Os03t0116300-01
Chr03	irgsp1_rep	CDS	927246	927513	.	+	1	Parent=Os03t0116300-01
Chr03	irgsp1_rep	CDS	927631	927912	.	+	0	Parent=Os03t0116300-01
Chr03	irgsp1_rep	three_prime_UTR	927913	928190	.	+	.	Parent=Os03t0116300-01
Chr03	irgsp1_rep	mRNA	925852	926283	.	+	.	ID=Os03t0116316-00;Name=Os03t0116316-00;Locus_id=Os03g0116316;Note=Similar to Hydrolase%2C alpha/beta fold family protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10SN5 (UniProt);TENOR=Os03t0116316-00
Chr03	irgsp1_rep	CDS	925852	926283	.	+	0	Parent=Os03t0116316-00
Chr03	irgsp1_rep	mRNA	925858	927905	.	-	.	ID=Os03t0116333-00;Name=Os03t0116333-00;Locus_id=Os03g0116333;Note=Hypothetical protein.;Transcript_evidence=tplb0041i10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0116333-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	927835	927905	.	-	.	Parent=Os03t0116333-00
Chr03	irgsp1_rep	CDS	927367	927834	.	-	0	Parent=Os03t0116333-00
Chr03	irgsp1_rep	three_prime_UTR	927241	927366	.	-	.	Parent=Os03t0116333-00
Chr03	irgsp1_rep	three_prime_UTR	926890	927124	.	-	.	Parent=Os03t0116333-00
Chr03	irgsp1_rep	three_prime_UTR	925858	926126	.	-	.	Parent=Os03t0116333-00
Chr03	irgsp1_rep	mRNA	931766	932663	.	-	.	ID=Os03t0116366-00;Name=Os03t0116366-00;Locus_id=Os03g0116366;Note=Hypothetical gene.;Transcript_evidence=CT829173 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os03t0116366-00;KEGG=Os03t0116366-00
Chr03	irgsp1_rep	five_prime_UTR	932554	932663	.	-	.	Parent=Os03t0116366-00
Chr03	irgsp1_rep	CDS	932293	932553	.	-	0	Parent=Os03t0116366-00
Chr03	irgsp1_rep	three_prime_UTR	931766	932292	.	-	.	Parent=Os03t0116366-00
Chr03	irgsp1_rep	mRNA	932241	934775	.	+	.	ID=Os03t0116400-01;Name=Os03t0116400-01;Locus_id=Os03g0116400;Oryzabase Gene Symbol Synonym(s)=OsRhmbd7%2C RHMBD7;Oryzabase Gene Name Synonym(s)=Rhomboid 7%2C RHOMBOID 7;Note=Similar to Membrane protein.;Transcript_evidence=AK061443 (DDBJ%2C Best hit),AK102725 (DDBJ%2C Best hit);ORF_evidence=NP_001149879.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Cellular Component: integral to membrane (GO:0016021),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S54%2C rhomboid (IPR002610),Peptidase S54%2C rhomboid domain (IPR022764);NIAS_FLcDNA=006-307-C10,J033105L05;Oryzabase=20063;TENOR=Os03t0116400-01
Chr03	irgsp1_rep	five_prime_UTR	932241	932341	.	+	.	Parent=Os03t0116400-01
Chr03	irgsp1_rep	CDS	932342	932625	.	+	0	Parent=Os03t0116400-01
Chr03	irgsp1_rep	CDS	932959	933122	.	+	1	Parent=Os03t0116400-01
Chr03	irgsp1_rep	CDS	933234	933397	.	+	2	Parent=Os03t0116400-01
Chr03	irgsp1_rep	CDS	933513	933766	.	+	0	Parent=Os03t0116400-01
Chr03	irgsp1_rep	CDS	934377	934488	.	+	1	Parent=Os03t0116400-01
Chr03	irgsp1_rep	three_prime_UTR	934489	934775	.	+	.	Parent=Os03t0116400-01
Chr03	irgsp1_rep	mRNA	935129	939195	.	-	.	ID=Os03t0116500-01;Name=Os03t0116500-01;Locus_id=Os03g0116500;Note=Constitutive photomorphogenic 11.;Transcript_evidence=AK101870 (DDBJ%2C Best hit);ORF_evidence=Q9M6R3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Proteasome component (PCI) domain (IPR000717),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),26S proteasome%2C regulatory subunit Rpn7 (IPR019585);NIAS_FLcDNA=J033070E21;Expression=AK101870;TENOR=Os03t0116500-01;KEGG=Os03t0116500-01
Chr03	irgsp1_rep	five_prime_UTR	939090	939195	.	-	.	Parent=Os03t0116500-01
Chr03	irgsp1_rep	CDS	938703	939089	.	-	0	Parent=Os03t0116500-01
Chr03	irgsp1_rep	CDS	937588	937908	.	-	0	Parent=Os03t0116500-01
Chr03	irgsp1_rep	CDS	936791	936907	.	-	0	Parent=Os03t0116500-01
Chr03	irgsp1_rep	CDS	936618	936703	.	-	0	Parent=Os03t0116500-01
Chr03	irgsp1_rep	CDS	935714	935948	.	-	1	Parent=Os03t0116500-01
Chr03	irgsp1_rep	CDS	935459	935638	.	-	0	Parent=Os03t0116500-01
Chr03	irgsp1_rep	three_prime_UTR	935129	935458	.	-	.	Parent=Os03t0116500-01
Chr03	irgsp1_rep	mRNA	939351	939886	.	+	.	ID=Os03t0116600-01;Name=Os03t0116600-01;Locus_id=Os03g0116600;Note=Conserved hypothetical protein.;Transcript_evidence=AK242030 (DDBJ%2C Best hit);ORF_evidence=NP_001048761.1 (RefSeq);NIAS_FLcDNA=J075115E19;TENOR=Os03t0116600-01;KEGG=Os03t0116600-01
Chr03	irgsp1_rep	five_prime_UTR	939351	939404	.	+	.	Parent=Os03t0116600-01
Chr03	irgsp1_rep	CDS	939405	939677	.	+	0	Parent=Os03t0116600-01
Chr03	irgsp1_rep	three_prime_UTR	939678	939886	.	+	.	Parent=Os03t0116600-01
Chr03	irgsp1_rep	mRNA	942736	944993	.	+	.	ID=Os03t0116700-01;Name=Os03t0116700-01;Locus_id=Os03g0116700;Oryzabase Gene Symbol Synonym(s)=OsFbox127%2C Os_F0532;Oryzabase Gene Name Synonym(s)=F-box protein 127;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK106276 (DDBJ%2C Best hit);ORF_evidence=NP_001152537.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-100-H04;Oryzabase=16918;Expression=AK106276;TENOR=Os03t0116700-01;KEGG=Os03t0116700-01
Chr03	irgsp1_rep	five_prime_UTR	942736	943164	.	+	.	Parent=Os03t0116700-01
Chr03	irgsp1_rep	CDS	943165	943509	.	+	0	Parent=Os03t0116700-01
Chr03	irgsp1_rep	CDS	943977	944095	.	+	0	Parent=Os03t0116700-01
Chr03	irgsp1_rep	CDS	944266	944695	.	+	1	Parent=Os03t0116700-01
Chr03	irgsp1_rep	three_prime_UTR	944696	944993	.	+	.	Parent=Os03t0116700-01
Chr03	irgsp1_rep	mRNA	946032	948981	.	+	.	ID=Os03t0116800-01;Name=Os03t0116800-01;Locus_id=Os03g0116800;Oryzabase Gene Symbol Synonym(s)=Os_F0716;Note=Similar to F-box protein.;Transcript_evidence=AK066955 (DDBJ%2C Best hit);ORF_evidence=B6UAY8 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013091C10;Oryzabase=17505;Expression=AK066955;TENOR=Os03t0116800-01;KEGG=Os03t0116800-01
Chr03	irgsp1_rep	five_prime_UTR	946032	946151	.	+	.	Parent=Os03t0116800-01
Chr03	irgsp1_rep	CDS	946152	946305	.	+	0	Parent=Os03t0116800-01
Chr03	irgsp1_rep	CDS	946392	946811	.	+	2	Parent=Os03t0116800-01
Chr03	irgsp1_rep	CDS	946924	947102	.	+	2	Parent=Os03t0116800-01
Chr03	irgsp1_rep	CDS	947885	948003	.	+	0	Parent=Os03t0116800-01
Chr03	irgsp1_rep	CDS	948497	948815	.	+	1	Parent=Os03t0116800-01
Chr03	irgsp1_rep	three_prime_UTR	948816	948981	.	+	.	Parent=Os03t0116800-01
Chr03	irgsp1_rep	mRNA	946152	948959	.	+	.	ID=Os03t0116800-02;Name=Os03t0116800-02;Locus_id=Os03g0116800;Oryzabase Gene Symbol Synonym(s)=Os_F0716;Note=Similar to F-box protein.;Transcript_evidence=AK104839 (DDBJ%2C Best hit);ORF_evidence=B6UAY8 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=001-042-F01;Oryzabase=17505;Expression=AK104839;TENOR=Os03t0116800-02;KEGG=Os03t0116800-02
Chr03	irgsp1_rep	CDS	946152	946305	.	+	0	Parent=Os03t0116800-02
Chr03	irgsp1_rep	CDS	946392	946811	.	+	2	Parent=Os03t0116800-02
Chr03	irgsp1_rep	CDS	946924	947102	.	+	2	Parent=Os03t0116800-02
Chr03	irgsp1_rep	CDS	947885	948003	.	+	0	Parent=Os03t0116800-02
Chr03	irgsp1_rep	CDS	948497	948815	.	+	1	Parent=Os03t0116800-02
Chr03	irgsp1_rep	three_prime_UTR	948816	948959	.	+	.	Parent=Os03t0116800-02
Chr03	irgsp1_rep	mRNA	946609	948961	.	-	.	ID=Os03t0116850-01;Name=Os03t0116850-01;Locus_id=Os03g0116850;Note=Hypothetical gene.;Transcript_evidence=AK068678 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013158H22;TENOR=Os03t0116850-01
Chr03	irgsp1_rep	five_prime_UTR	948497	948961	.	-	.	Parent=Os03t0116850-01
Chr03	irgsp1_rep	five_prime_UTR	947885	948003	.	-	.	Parent=Os03t0116850-01
Chr03	irgsp1_rep	five_prime_UTR	946944	947102	.	-	.	Parent=Os03t0116850-01
Chr03	irgsp1_rep	CDS	946924	946943	.	-	0	Parent=Os03t0116850-01
Chr03	irgsp1_rep	CDS	946609	946811	.	-	1	Parent=Os03t0116850-01
Chr03	irgsp1_rep	mRNA	949797	957714	.	+	.	ID=Os03t0116900-01;Name=Os03t0116900-01;Locus_id=Os03g0116900;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK121611 (DDBJ%2C Best hit);ORF_evidence=Q336Z5 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033043A05;Expression=AK121611;TENOR=Os03t0116900-01;KEGG=Os03t0116900-01
Chr03	irgsp1_rep	five_prime_UTR	949797	950072	.	+	.	Parent=Os03t0116900-01
Chr03	irgsp1_rep	five_prime_UTR	951866	952214	.	+	.	Parent=Os03t0116900-01
Chr03	irgsp1_rep	five_prime_UTR	952365	952593	.	+	.	Parent=Os03t0116900-01
Chr03	irgsp1_rep	five_prime_UTR	952776	953049	.	+	.	Parent=Os03t0116900-01
Chr03	irgsp1_rep	five_prime_UTR	953164	955786	.	+	.	Parent=Os03t0116900-01
Chr03	irgsp1_rep	CDS	955787	957478	.	+	0	Parent=Os03t0116900-01
Chr03	irgsp1_rep	three_prime_UTR	957479	957714	.	+	.	Parent=Os03t0116900-01
Chr03	irgsp1_rep	mRNA	955768	957750	.	+	.	ID=Os03t0116900-02;Name=Os03t0116900-02;Locus_id=Os03g0116900;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK100255 (DDBJ%2C Best hit);ORF_evidence=Q10SM8 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023061F22;Expression=AK100255;TENOR=Os03t0116900-02;KEGG=Os03t0116900-02
Chr03	irgsp1_rep	five_prime_UTR	955768	955786	.	+	.	Parent=Os03t0116900-02
Chr03	irgsp1_rep	CDS	955787	957478	.	+	0	Parent=Os03t0116900-02
Chr03	irgsp1_rep	three_prime_UTR	957479	957750	.	+	.	Parent=Os03t0116900-02
Chr03	irgsp1_rep	mRNA	950273	952549	.	-	.	ID=Os03t0117000-00;Name=Os03t0117000-00;Locus_id=Os03g0117000;Note=Similar to Dihydrodipicolinate reductase%2C N-terminus family protein.;Transcript_evidence=AK252745 (DDBJ);ORF_evidence=Q10SM9 (UniProt);GO=Biological Process: lysine biosynthetic process via diaminopimelate (GO:0009089),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: dihydrodipicolinate reductase activity (GO:0008839),Molecular Function: NADPH binding (GO:0070402);InterPro=Dihydrodipicolinate reductase%2C N-terminal (IPR000846),Dihydrodipicolinate reductase%2C bacterial/plant (IPR011770),NAD(P)-binding domain (IPR016040);TENOR=Os03t0117000-00;KEGG=Os03t0117000-00 (EC:1.3.1.26)
Chr03	irgsp1_rep	CDS	952223	952549	.	-	0	Parent=Os03t0117000-00
Chr03	irgsp1_rep	CDS	952033	952107	.	-	0	Parent=Os03t0117000-00
Chr03	irgsp1_rep	CDS	951882	951947	.	-	0	Parent=Os03t0117000-00
Chr03	irgsp1_rep	CDS	951370	951465	.	-	0	Parent=Os03t0117000-00
Chr03	irgsp1_rep	CDS	950839	950919	.	-	0	Parent=Os03t0117000-00
Chr03	irgsp1_rep	three_prime_UTR	950832	950838	.	-	.	Parent=Os03t0117000-00
Chr03	irgsp1_rep	three_prime_UTR	950547	950648	.	-	.	Parent=Os03t0117000-00
Chr03	irgsp1_rep	three_prime_UTR	950376	950462	.	-	.	Parent=Os03t0117000-00
Chr03	irgsp1_rep	three_prime_UTR	950273	950305	.	-	.	Parent=Os03t0117000-00
Chr03	irgsp1_rep	mRNA	957845	958110	.	+	.	ID=Os03t0117050-01;Name=Os03t0117050-01;Locus_id=Os03g0117050;Note=Non-protein coding transcript.;Transcript_evidence=AK241608 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065185I10;TENOR=Os03t0117050-01
Chr03	irgsp1_rep	exon	957845	958110	.	+	.	Parent=Os03t0117050-01
Chr03	irgsp1_rep	mRNA	958133	960101	.	-	.	ID=Os03t0117100-01;Name=Os03t0117100-01;Locus_id=Os03g0117100;RAP-DB Gene Symbol Synonym(s)=PEX11-1%2C OsPEX11-1;RAP-DB Gene Name Synonym(s)=PEROXIN 11-1%2C Peroxisomal membrane protein 11-1%2C Peroxin-11-1;CGSNL Gene Symbol=PEX11-1;CGSNL Gene Name=PEROXIN 11-1;Oryzabase Gene Symbol Synonym(s)=OsPEX11-1%2C OsPEX11;Oryzabase Gene Name Synonym(s)=Peroxisomal membrane protein 11-1%2C Peroxin-11-1%2C peroxisomal biogenesis factor 11;Note=Peroxisomal protein%2C Response to salt and low nitrogen stresses;Transcript_evidence=AK104570;ORF_evidence=Q10SM7;GO=Biological Process: peroxisome fission (GO:0016559),Cellular Component: integral component of peroxisomal membrane (GO:0005779);InterPro=Peroxisomal biogenesis factor 11 (IPR008733);NIAS_FLcDNA=006-306-G06;Manual Curation=October 5%2C 2016;Literature_PMID=18291602;Oryzabase=7182;Expression=AK104570;TENOR=Os03t0117100-01;KEGG=Os03t0117100-01
Chr03	irgsp1_rep	five_prime_UTR	959977	960101	.	-	.	Parent=Os03t0117100-01
Chr03	irgsp1_rep	five_prime_UTR	959739	959747	.	-	.	Parent=Os03t0117100-01
Chr03	irgsp1_rep	CDS	959547	959738	.	-	0	Parent=Os03t0117100-01
Chr03	irgsp1_rep	CDS	959352	959426	.	-	0	Parent=Os03t0117100-01
Chr03	irgsp1_rep	CDS	959189	959263	.	-	0	Parent=Os03t0117100-01
Chr03	irgsp1_rep	CDS	958974	959054	.	-	0	Parent=Os03t0117100-01
Chr03	irgsp1_rep	CDS	958811	958885	.	-	0	Parent=Os03t0117100-01
Chr03	irgsp1_rep	CDS	958521	958694	.	-	0	Parent=Os03t0117100-01
Chr03	irgsp1_rep	CDS	958381	958422	.	-	0	Parent=Os03t0117100-01
Chr03	irgsp1_rep	three_prime_UTR	958133	958380	.	-	.	Parent=Os03t0117100-01
Chr03	irgsp1_rep	mRNA	958129	960004	.	-	.	ID=Os03t0117100-02;Name=Os03t0117100-02;Locus_id=Os03g0117100;CGSNL Gene Symbol=PEX11-1;CGSNL Gene Name=PEROXIN 11-1;Oryzabase Gene Symbol Synonym(s)=OsPEX11-1%2C OsPEX11;Oryzabase Gene Name Synonym(s)=Peroxisomal membrane protein 11-1%2C Peroxin-11-1%2C peroxisomal biogenesis factor 11;Note=Peroxisomal biogenesis factor 11 family protein.;Transcript_evidence=AK104706 (DDBJ%2C Best hit);ORF_evidence=Q10SM7 (UniProt);GO=Biological Process: peroxisome fission (GO:0016559),Cellular Component: peroxisomal membrane (GO:0005778);InterPro=Peroxisomal biogenesis factor 11 (IPR008733);NIAS_FLcDNA=001-037-D09;Oryzabase=7182;Expression=AK070213;TENOR=Os03t0117100-02;KEGG=Os03t0117100-02;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	959977	960004	.	-	.	Parent=Os03t0117100-02
Chr03	irgsp1_rep	five_prime_UTR	959739	959747	.	-	.	Parent=Os03t0117100-02
Chr03	irgsp1_rep	CDS	959547	959738	.	-	0	Parent=Os03t0117100-02
Chr03	irgsp1_rep	CDS	959352	959426	.	-	0	Parent=Os03t0117100-02
Chr03	irgsp1_rep	CDS	959189	959263	.	-	0	Parent=Os03t0117100-02
Chr03	irgsp1_rep	CDS	958974	959054	.	-	0	Parent=Os03t0117100-02
Chr03	irgsp1_rep	CDS	958811	958885	.	-	0	Parent=Os03t0117100-02
Chr03	irgsp1_rep	CDS	958521	958694	.	-	0	Parent=Os03t0117100-02
Chr03	irgsp1_rep	CDS	958381	958422	.	-	0	Parent=Os03t0117100-02
Chr03	irgsp1_rep	three_prime_UTR	958129	958380	.	-	.	Parent=Os03t0117100-02
Chr03	irgsp1_rep	mRNA	960447	962524	.	+	.	ID=Os03t0117200-01;Name=Os03t0117200-01;Locus_id=Os03g0117200;Note=Similar to Riboflavin biosynthesis protein RibD.;Transcript_evidence=AK070281 (DDBJ%2C Best hit);ORF_evidence=B6TRH4 (UniProt);GO=Biological Process: riboflavin biosynthetic process (GO:0009231),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity (GO:0008835),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: hydrolase activity (GO:0016787);InterPro=CMP/dCMP deaminase%2C zinc-binding (IPR002125),Riboflavin biosynthesis protein RibD (IPR004794),APOBEC/CMP deaminase%2C zinc-binding (IPR016192),Cytidine deaminase-like (IPR016193),Dihydrofolate reductase-like domain (IPR024072);NIAS_FLcDNA=J023049O09;Expression=AK070281;TENOR=Os03t0117200-01;KEGG=Os03t0117200-01 (EC:1.1.1.193%2C EC:3.5.4.26)
Chr03	irgsp1_rep	five_prime_UTR	960447	960573	.	+	.	Parent=Os03t0117200-01
Chr03	irgsp1_rep	CDS	960574	960954	.	+	0	Parent=Os03t0117200-01
Chr03	irgsp1_rep	CDS	961340	961641	.	+	0	Parent=Os03t0117200-01
Chr03	irgsp1_rep	CDS	961734	962322	.	+	1	Parent=Os03t0117200-01
Chr03	irgsp1_rep	three_prime_UTR	962323	962524	.	+	.	Parent=Os03t0117200-01
Chr03	irgsp1_rep	mRNA	964180	965301	.	+	.	ID=Os03t0117300-01;Name=Os03t0117300-01;Locus_id=Os03g0117300;Note=Beta-glucanase family protein.;Transcript_evidence=AK073730 (DDBJ%2C Best hit);ORF_evidence=NP_001150346.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 16 (IPR000757),Beta-glucanase (IPR008264),Concanavalin A-like lectin/glucanase (IPR008985),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320);NIAS_FLcDNA=J033058F24;Expression=AK073730;TENOR=Os03t0117300-01;KEGG=Os03t0117300-01 (EC:2.4.1.207)
Chr03	irgsp1_rep	five_prime_UTR	964180	964226	.	+	.	Parent=Os03t0117300-01
Chr03	irgsp1_rep	CDS	964227	965165	.	+	0	Parent=Os03t0117300-01
Chr03	irgsp1_rep	three_prime_UTR	965166	965301	.	+	.	Parent=Os03t0117300-01
Chr03	irgsp1_rep	mRNA	965622	965815	.	+	.	ID=Os03t0117432-00;Name=Os03t0117432-00;Locus_id=Os03g0117432;Note=Non-protein coding transcript.;Transcript_evidence=CT835274 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os03t0117432-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	exon	965622	965815	.	+	.	Parent=Os03t0117432-00
Chr03	irgsp1_rep	mRNA	974606	978412	.	+	.	ID=Os03t0117800-01;Name=Os03t0117800-01;Locus_id=Os03g0117800;Note=Fructosamine/Ketosamine-3-kinase domain containing protein.;Transcript_evidence=AK066948 (DDBJ%2C Best hit);ORF_evidence=NP_191667.2 (RefSeq);GO=Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009),Fructosamine/Ketosamine-3-kinase (IPR016477);NIAS_FLcDNA=J013089A07;Expression=AK066948;TENOR=Os03t0117800-01;KEGG=Os03t0117800-01
Chr03	irgsp1_rep	five_prime_UTR	974606	974672	.	+	.	Parent=Os03t0117800-01
Chr03	irgsp1_rep	CDS	974673	974808	.	+	0	Parent=Os03t0117800-01
Chr03	irgsp1_rep	CDS	975194	975347	.	+	2	Parent=Os03t0117800-01
Chr03	irgsp1_rep	CDS	975458	975548	.	+	1	Parent=Os03t0117800-01
Chr03	irgsp1_rep	CDS	976049	976123	.	+	0	Parent=Os03t0117800-01
Chr03	irgsp1_rep	CDS	976201	976289	.	+	0	Parent=Os03t0117800-01
Chr03	irgsp1_rep	CDS	976401	976519	.	+	1	Parent=Os03t0117800-01
Chr03	irgsp1_rep	CDS	976655	976795	.	+	2	Parent=Os03t0117800-01
Chr03	irgsp1_rep	CDS	977134	977210	.	+	2	Parent=Os03t0117800-01
Chr03	irgsp1_rep	CDS	978029	978175	.	+	0	Parent=Os03t0117800-01
Chr03	irgsp1_rep	three_prime_UTR	978176	978412	.	+	.	Parent=Os03t0117800-01
Chr03	irgsp1_rep	mRNA	978816	979770	.	+	.	ID=Os03t0117900-01;Name=Os03t0117900-01;Locus_id=Os03g0117900;CGSNL Gene Symbol=ERF137;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 137;Oryzabase Gene Symbol Synonym(s)=OsERF#137%2C OsERF137%2C AP2/EREBP136%2C AP2/EREBP#136;Oryzabase Gene Name Synonym(s)=ethylene response factor 137%2C APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 136;Note=Similar to Transcription factor.;Transcript_evidence=AK108930 (DDBJ%2C Best hit);ORF_evidence=Q597Q6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=002-153-A05;Oryzabase=10630;Expression=AK108930;TENOR=Os03t0117900-01;KEGG=Os03t0117900-01
Chr03	irgsp1_rep	five_prime_UTR	978816	978931	.	+	.	Parent=Os03t0117900-01
Chr03	irgsp1_rep	CDS	978932	979534	.	+	0	Parent=Os03t0117900-01
Chr03	irgsp1_rep	three_prime_UTR	979535	979770	.	+	.	Parent=Os03t0117900-01
Chr03	irgsp1_rep	mRNA	985771	989760	.	+	.	ID=Os03t0118100-01;Name=Os03t0118100-01;Locus_id=Os03g0118100;Note=Conserved hypothetical protein.;Transcript_evidence=AK104959 (DDBJ%2C Best hit),AK072029 (DDBJ%2C Best hit);ORF_evidence=B8AMX2 (UniProt);NIAS_FLcDNA=001-115-C01,J013105G11;Expression=AK104959;TENOR=Os03t0118100-01;KEGG=Os03t0118100-01
Chr03	irgsp1_rep	five_prime_UTR	985771	985973	.	+	.	Parent=Os03t0118100-01
Chr03	irgsp1_rep	CDS	985974	986531	.	+	0	Parent=Os03t0118100-01
Chr03	irgsp1_rep	CDS	988144	988312	.	+	0	Parent=Os03t0118100-01
Chr03	irgsp1_rep	CDS	988949	989586	.	+	2	Parent=Os03t0118100-01
Chr03	irgsp1_rep	three_prime_UTR	989587	989760	.	+	.	Parent=Os03t0118100-01
Chr03	irgsp1_rep	mRNA	991125	994684	.	+	.	ID=Os03t0118200-01;Name=Os03t0118200-01;Locus_id=Os03g0118200;Note=UAA transporter family protein.;Transcript_evidence=AK064777 (DDBJ%2C Best hit);ORF_evidence=A2Q3P6 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085);InterPro=UAA transporter (IPR013657);NIAS_FLcDNA=J013000B02;Expression=AK064777;TENOR=Os03t0118200-01;KEGG=Os03t0118200-01
Chr03	irgsp1_rep	five_prime_UTR	991125	991322	.	+	.	Parent=Os03t0118200-01
Chr03	irgsp1_rep	five_prime_UTR	991478	991529	.	+	.	Parent=Os03t0118200-01
Chr03	irgsp1_rep	CDS	991530	991658	.	+	0	Parent=Os03t0118200-01
Chr03	irgsp1_rep	CDS	992058	992086	.	+	0	Parent=Os03t0118200-01
Chr03	irgsp1_rep	CDS	992194	992395	.	+	1	Parent=Os03t0118200-01
Chr03	irgsp1_rep	CDS	993156	993398	.	+	0	Parent=Os03t0118200-01
Chr03	irgsp1_rep	CDS	993489	993590	.	+	0	Parent=Os03t0118200-01
Chr03	irgsp1_rep	CDS	994060	994167	.	+	0	Parent=Os03t0118200-01
Chr03	irgsp1_rep	CDS	994261	994497	.	+	0	Parent=Os03t0118200-01
Chr03	irgsp1_rep	three_prime_UTR	994498	994684	.	+	.	Parent=Os03t0118200-01
Chr03	irgsp1_rep	mRNA	991491	994700	.	+	.	ID=Os03t0118200-02;Name=Os03t0118200-02;Locus_id=Os03g0118200;Note=UAA transporter family protein.;Transcript_evidence=AK104538 (DDBJ%2C Best hit),AK060919 (DDBJ%2C Best hit);ORF_evidence=A2Q3P6 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085);InterPro=UAA transporter (IPR013657);NIAS_FLcDNA=006-304-G11,001-035-H01;Expression=AK104538;TENOR=Os03t0118200-02;KEGG=Os03t0118200-02
Chr03	irgsp1_rep	five_prime_UTR	991491	991529	.	+	.	Parent=Os03t0118200-02
Chr03	irgsp1_rep	CDS	991530	991658	.	+	0	Parent=Os03t0118200-02
Chr03	irgsp1_rep	CDS	992058	992086	.	+	0	Parent=Os03t0118200-02
Chr03	irgsp1_rep	CDS	992194	992395	.	+	1	Parent=Os03t0118200-02
Chr03	irgsp1_rep	CDS	993156	993398	.	+	0	Parent=Os03t0118200-02
Chr03	irgsp1_rep	CDS	993489	993590	.	+	0	Parent=Os03t0118200-02
Chr03	irgsp1_rep	CDS	994060	994167	.	+	0	Parent=Os03t0118200-02
Chr03	irgsp1_rep	CDS	994261	994497	.	+	0	Parent=Os03t0118200-02
Chr03	irgsp1_rep	three_prime_UTR	994498	994700	.	+	.	Parent=Os03t0118200-02
Chr03	irgsp1_rep	mRNA	997661	1000165	.	+	.	ID=Os03t0118400-01;Name=Os03t0118400-01;Locus_id=Os03g0118400;CGSNL Gene Symbol=CDC2-1;CGSNL Gene Name=CELL DIVISION CONTROL PROTEIN 2 HOMOLOG 1;Oryzabase Gene Symbol Synonym(s)=cdc2Os-1%2C CDC2Os-1%2C CDKA-1%2C CDKA%3B1%2C Orysa%3BCDKA%3B1%2C OsCDKA%3B1%2C cdc2Os1%2C Rcdc2-1%2C OsCDKA1%2C CDKA1;Oryzabase Gene Name Synonym(s)=Cell division control protein 2 homolog 1%2C Cyclin-dependent kinase A-1;Note=Similar to Cyclin-dependent kinase A-1.;Transcript_evidence=AK120855 (DDBJ%2C Best hit);ORF_evidence=P29618 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023024C14;Oryzabase=6019;TENOR=Os03t0118400-01
Chr03	irgsp1_rep	five_prime_UTR	997661	997888	.	+	.	Parent=Os03t0118400-01
Chr03	irgsp1_rep	CDS	997889	997897	.	+	0	Parent=Os03t0118400-01
Chr03	irgsp1_rep	CDS	998012	998196	.	+	0	Parent=Os03t0118400-01
Chr03	irgsp1_rep	CDS	998472	998592	.	+	1	Parent=Os03t0118400-01
Chr03	irgsp1_rep	CDS	999990	1000165	.	+	0	Parent=Os03t0118400-01
Chr03	irgsp1_rep	mRNA	997661	1001196	.	+	.	ID=Os03t0118400-02;Name=Os03t0118400-02;Locus_id=Os03g0118400;CGSNL Gene Symbol=CDC2-1;CGSNL Gene Name=CELL DIVISION CONTROL PROTEIN 2 HOMOLOG 1;Oryzabase Gene Symbol Synonym(s)=cdc2Os-1%2C CDC2Os-1%2C CDKA-1%2C CDKA%3B1%2C Orysa%3BCDKA%3B1%2C OsCDKA%3B1%2C cdc2Os1%2C Rcdc2-1%2C OsCDKA1%2C CDKA1;Oryzabase Gene Name Synonym(s)=Cell division control protein 2 homolog 1%2C Cyclin-dependent kinase A-1;Note=Similar to Cyclin-dependent kinase A-1.;Transcript_evidence=AK073961 (DDBJ%2C Best hit);ORF_evidence=P29618 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033074A14;Oryzabase=6019;Expression=AK073961;TENOR=Os03t0118400-02;KEGG=Os03t0118400-02 (EC:2.7.11.22)
Chr03	irgsp1_rep	five_prime_UTR	997661	997888	.	+	.	Parent=Os03t0118400-02
Chr03	irgsp1_rep	CDS	997889	997897	.	+	0	Parent=Os03t0118400-02
Chr03	irgsp1_rep	CDS	998012	998196	.	+	0	Parent=Os03t0118400-02
Chr03	irgsp1_rep	CDS	998472	998592	.	+	1	Parent=Os03t0118400-02
Chr03	irgsp1_rep	CDS	1000111	1000122	.	+	0	Parent=Os03t0118400-02
Chr03	irgsp1_rep	three_prime_UTR	1000123	1000163	.	+	.	Parent=Os03t0118400-02
Chr03	irgsp1_rep	three_prime_UTR	1000302	1000465	.	+	.	Parent=Os03t0118400-02
Chr03	irgsp1_rep	three_prime_UTR	1000562	1000649	.	+	.	Parent=Os03t0118400-02
Chr03	irgsp1_rep	three_prime_UTR	1000743	1000796	.	+	.	Parent=Os03t0118400-02
Chr03	irgsp1_rep	three_prime_UTR	1000888	1001196	.	+	.	Parent=Os03t0118400-02
Chr03	irgsp1_rep	mRNA	1000560	1001181	.	+	.	ID=Os03t0118400-03;Name=Os03t0118400-03;Locus_id=Os03g0118400;CGSNL Gene Symbol=CDC2-1;CGSNL Gene Name=CELL DIVISION CONTROL PROTEIN 2 HOMOLOG 1;Oryzabase Gene Symbol Synonym(s)=cdc2Os-1%2C CDC2Os-1%2C CDKA-1%2C CDKA%3B1%2C Orysa%3BCDKA%3B1%2C OsCDKA%3B1%2C cdc2Os1%2C Rcdc2-1%2C OsCDKA1%2C CDKA1;Oryzabase Gene Name Synonym(s)=Cell division control protein 2 homolog 1%2C Cyclin-dependent kinase A-1;Note=Similar to Cyclin-dependent kinase A-1.;Transcript_evidence=AK062097 (DDBJ%2C Best hit);ORF_evidence=P29618 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-045-A01;Oryzabase=6019;Expression=AK062097;TENOR=Os03t0118400-03;KEGG=Os03t0118400-03 (EC:2.7.11.22)
Chr03	irgsp1_rep	CDS	1000560	1000649	.	+	0	Parent=Os03t0118400-03
Chr03	irgsp1_rep	CDS	1000743	1000796	.	+	0	Parent=Os03t0118400-03
Chr03	irgsp1_rep	CDS	1000888	1000977	.	+	0	Parent=Os03t0118400-03
Chr03	irgsp1_rep	three_prime_UTR	1000978	1001181	.	+	.	Parent=Os03t0118400-03
Chr03	irgsp1_rep	mRNA	998129	1001136	.	-	.	ID=Os03t0118425-00;Name=Os03t0118425-00;Locus_id=Os03g0118425;Note=Hypothetical gene.;Transcript_evidence=BT016935 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0118425-00;KEGG=Os03t0118425-00
Chr03	irgsp1_rep	five_prime_UTR	1001008	1001136	.	-	.	Parent=Os03t0118425-00
Chr03	irgsp1_rep	CDS	1000882	1001007	.	-	0	Parent=Os03t0118425-00
Chr03	irgsp1_rep	CDS	1000600	1000689	.	-	0	Parent=Os03t0118425-00
Chr03	irgsp1_rep	three_prime_UTR	1000567	1000599	.	-	.	Parent=Os03t0118425-00
Chr03	irgsp1_rep	three_prime_UTR	1000310	1000468	.	-	.	Parent=Os03t0118425-00
Chr03	irgsp1_rep	three_prime_UTR	999971	1000166	.	-	.	Parent=Os03t0118425-00
Chr03	irgsp1_rep	three_prime_UTR	998477	998581	.	-	.	Parent=Os03t0118425-00
Chr03	irgsp1_rep	three_prime_UTR	998129	998199	.	-	.	Parent=Os03t0118425-00
Chr03	irgsp1_rep	mRNA	1002803	1003083	.	+	.	ID=Os03t0118450-00;Name=Os03t0118450-00;Locus_id=Os03g0118450;Note=Non-protein coding transcript.;Transcript_evidence=CT835286 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os03t0118450-00
Chr03	irgsp1_rep	exon	1002803	1003083	.	+	.	Parent=Os03t0118450-00
Chr03	irgsp1_rep	mRNA	1004320	1007975	.	-	.	ID=Os03t0118500-01;Name=Os03t0118500-01;Locus_id=Os03g0118500;Note=Non-protein coding transcript.;Transcript_evidence=AK108640 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-147-H12;TENOR=Os03t0118500-01
Chr03	irgsp1_rep	exon	1007579	1007975	.	-	.	Parent=Os03t0118500-01
Chr03	irgsp1_rep	exon	1004320	1005120	.	-	.	Parent=Os03t0118500-01
Chr03	irgsp1_rep	mRNA	1004328	1007269	.	+	.	ID=Os03t0118600-01;Name=Os03t0118600-01;Locus_id=Os03g0118600;Note=Similar to Dihydrodipicolinate reductase-like protein.;Transcript_evidence=AK065477 (DDBJ%2C Best hit);ORF_evidence=Q10SL7 (UniProt);GO=Biological Process: lysine biosynthetic process via diaminopimelate (GO:0009089),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: dihydrodipicolinate reductase activity (GO:0008839),Molecular Function: NADPH binding (GO:0070402);InterPro=Dihydrodipicolinate reductase%2C N-terminal (IPR000846),Dihydrodipicolinate reductase%2C bacterial/plant (IPR011770),NAD(P)-binding domain (IPR016040),Dihydrodipicolinate reductase%2C C-terminal (IPR022663),Dihydrodipicolinate reductase%2C bacterial (IPR023940);NIAS_FLcDNA=J013023L22;Expression=AK065477;TENOR=Os03t0118600-01;KEGG=Os03t0118600-01 (EC:1.3.1.26)
Chr03	irgsp1_rep	five_prime_UTR	1004328	1004425	.	+	.	Parent=Os03t0118600-01
Chr03	irgsp1_rep	CDS	1004426	1004539	.	+	0	Parent=Os03t0118600-01
Chr03	irgsp1_rep	CDS	1004627	1004749	.	+	0	Parent=Os03t0118600-01
Chr03	irgsp1_rep	CDS	1004865	1004939	.	+	0	Parent=Os03t0118600-01
Chr03	irgsp1_rep	CDS	1005042	1005107	.	+	0	Parent=Os03t0118600-01
Chr03	irgsp1_rep	CDS	1005537	1005632	.	+	0	Parent=Os03t0118600-01
Chr03	irgsp1_rep	CDS	1005741	1005857	.	+	0	Parent=Os03t0118600-01
Chr03	irgsp1_rep	CDS	1006094	1006186	.	+	0	Parent=Os03t0118600-01
Chr03	irgsp1_rep	CDS	1006369	1006470	.	+	0	Parent=Os03t0118600-01
Chr03	irgsp1_rep	CDS	1006556	1006642	.	+	0	Parent=Os03t0118600-01
Chr03	irgsp1_rep	CDS	1006718	1006750	.	+	0	Parent=Os03t0118600-01
Chr03	irgsp1_rep	three_prime_UTR	1006751	1006821	.	+	.	Parent=Os03t0118600-01
Chr03	irgsp1_rep	three_prime_UTR	1006930	1007269	.	+	.	Parent=Os03t0118600-01
Chr03	irgsp1_rep	mRNA	1004394	1007269	.	+	.	ID=Os03t0118600-02;Name=Os03t0118600-02;Locus_id=Os03g0118600;Note=Similar to dihydrodipicolinate reductase.;Transcript_evidence=AK062159 (DDBJ%2C Best hit);ORF_evidence=B6TVJ6 (UniProt);GO=Biological Process: lysine biosynthetic process via diaminopimelate (GO:0009089),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: dihydrodipicolinate reductase activity (GO:0008839),Molecular Function: NADPH binding (GO:0070402);InterPro=Dihydrodipicolinate reductase%2C N-terminal (IPR000846),Dihydrodipicolinate reductase%2C bacterial/plant (IPR011770),NAD(P)-binding domain (IPR016040),Dihydrodipicolinate reductase%2C C-terminal (IPR022663);NIAS_FLcDNA=001-046-A07;Expression=AK062159;TENOR=Os03t0118600-02;KEGG=Os03t0118600-02 (EC:1.3.1.26)
Chr03	irgsp1_rep	five_prime_UTR	1004394	1004425	.	+	.	Parent=Os03t0118600-02
Chr03	irgsp1_rep	CDS	1004426	1004539	.	+	0	Parent=Os03t0118600-02
Chr03	irgsp1_rep	CDS	1004627	1004749	.	+	0	Parent=Os03t0118600-02
Chr03	irgsp1_rep	CDS	1004865	1005107	.	+	0	Parent=Os03t0118600-02
Chr03	irgsp1_rep	CDS	1005537	1005632	.	+	0	Parent=Os03t0118600-02
Chr03	irgsp1_rep	CDS	1005741	1005857	.	+	0	Parent=Os03t0118600-02
Chr03	irgsp1_rep	CDS	1006094	1006186	.	+	0	Parent=Os03t0118600-02
Chr03	irgsp1_rep	CDS	1006369	1006470	.	+	0	Parent=Os03t0118600-02
Chr03	irgsp1_rep	CDS	1006556	1006642	.	+	0	Parent=Os03t0118600-02
Chr03	irgsp1_rep	CDS	1006718	1006750	.	+	0	Parent=Os03t0118600-02
Chr03	irgsp1_rep	three_prime_UTR	1006751	1006840	.	+	.	Parent=Os03t0118600-02
Chr03	irgsp1_rep	three_prime_UTR	1006930	1007269	.	+	.	Parent=Os03t0118600-02
Chr03	irgsp1_rep	mRNA	1008493	1010511	.	+	.	ID=Os03t0118700-00;Name=Os03t0118700-00;Locus_id=Os03g0118700;Oryzabase Gene Name Synonym(s)=HTH1-related protein;Note=Similar to predicted protein.;Transcript_evidence=BT085971 (DDBJ);ORF_evidence=Q8H052 (UniProt);GO=Biological Process: alcohol metabolic process (GO:0006066),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: choline dehydrogenase activity (GO:0008812),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Glucose-methanol-choline oxidoreductase%2C N-terminal (IPR000172),Glucose-methanol-choline oxidoreductase%2C C-terminal (IPR007867),Glucose-methanol-choline oxidoreductase (IPR012132);Oryzabase=22385;TENOR=Os03t0118700-00;KEGG=Os03t0118700-00
Chr03	irgsp1_rep	CDS	1008493	1009713	.	+	0	Parent=Os03t0118700-00
Chr03	irgsp1_rep	CDS	1009780	1010354	.	+	0	Parent=Os03t0118700-00
Chr03	irgsp1_rep	CDS	1010454	1010511	.	+	1	Parent=Os03t0118700-00
Chr03	irgsp1_rep	mRNA	1015325	1020066	.	+	.	ID=Os03t0118800-01;Name=Os03t0118800-01;Locus_id=Os03g0118800;Note=Similar to Hydroxymethylglutaryl-CoA synthase.;Transcript_evidence=AK071039 (DDBJ%2C Best hit);ORF_evidence=B6T895 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: isoprenoid biosynthetic process (GO:0008299),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydroxymethylglutaryl-CoA synthase activity (GO:0004421);InterPro=Hydroxymethylglutaryl-coenzyme A synthase%2C active site (IPR000590),Hydroxymethylglutaryl-CoA synthase%2C eukaryotic (IPR010122),Hydroxymethylglutaryl-coenzyme A synthase%2C N-terminal (IPR013528),Hydroxymethylglutaryl-coenzyme A synthase C-terminal (IPR013746),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);NIAS_FLcDNA=J023079L19;TENOR=Os03t0118800-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	1015325	1015419	.	+	.	Parent=Os03t0118800-01
Chr03	irgsp1_rep	CDS	1015420	1015491	.	+	0	Parent=Os03t0118800-01
Chr03	irgsp1_rep	CDS	1016817	1016923	.	+	0	Parent=Os03t0118800-01
Chr03	irgsp1_rep	CDS	1017226	1017358	.	+	1	Parent=Os03t0118800-01
Chr03	irgsp1_rep	CDS	1017444	1017587	.	+	0	Parent=Os03t0118800-01
Chr03	irgsp1_rep	CDS	1017906	1018064	.	+	0	Parent=Os03t0118800-01
Chr03	irgsp1_rep	CDS	1018182	1018255	.	+	0	Parent=Os03t0118800-01
Chr03	irgsp1_rep	CDS	1018341	1018416	.	+	1	Parent=Os03t0118800-01
Chr03	irgsp1_rep	CDS	1018793	1018848	.	+	0	Parent=Os03t0118800-01
Chr03	irgsp1_rep	CDS	1018968	1019055	.	+	1	Parent=Os03t0118800-01
Chr03	irgsp1_rep	CDS	1019141	1019281	.	+	0	Parent=Os03t0118800-01
Chr03	irgsp1_rep	CDS	1019374	1019523	.	+	0	Parent=Os03t0118800-01
Chr03	irgsp1_rep	CDS	1019637	1019828	.	+	0	Parent=Os03t0118800-01
Chr03	irgsp1_rep	three_prime_UTR	1019829	1020066	.	+	.	Parent=Os03t0118800-01
Chr03	irgsp1_rep	mRNA	1021458	1024531	.	+	.	ID=Os03t0118900-01;Name=Os03t0118900-01;Locus_id=Os03g0118900;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=AK073382 (DDBJ%2C Best hit);ORF_evidence=A2XBT8 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),Ataxin-10 domain (IPR019156);NIAS_FLcDNA=J033030H10;Expression=AK073382;TENOR=Os03t0118900-01;KEGG=Os03t0118900-01
Chr03	irgsp1_rep	five_prime_UTR	1021458	1021558	.	+	.	Parent=Os03t0118900-01
Chr03	irgsp1_rep	CDS	1021559	1022090	.	+	0	Parent=Os03t0118900-01
Chr03	irgsp1_rep	CDS	1022990	1023849	.	+	2	Parent=Os03t0118900-01
Chr03	irgsp1_rep	three_prime_UTR	1023850	1023853	.	+	.	Parent=Os03t0118900-01
Chr03	irgsp1_rep	three_prime_UTR	1024224	1024531	.	+	.	Parent=Os03t0118900-01
Chr03	irgsp1_rep	mRNA	1024732	1026761	.	-	.	ID=Os03t0119000-01;Name=Os03t0119000-01;Locus_id=Os03g0119000;Note=Prolyl 4-hydroxylase%2C alpha subunit domain containing protein.;Transcript_evidence=AK071417 (DDBJ%2C Best hit),AK104225 (DDBJ%2C Best hit),AK104441 (DDBJ%2C Best hit);ORF_evidence=NP_568767.2 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706),Molecular Function: L-ascorbic acid binding (GO:0031418);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123),Prolyl 4-hydroxylase%2C alpha subunit (IPR006620);NIAS_FLcDNA=J023091L16,006-306-G01,006-210-A11;TENOR=Os03t0119000-01
Chr03	irgsp1_rep	five_prime_UTR	1026754	1026761	.	-	.	Parent=Os03t0119000-01
Chr03	irgsp1_rep	CDS	1026541	1026753	.	-	0	Parent=Os03t0119000-01
Chr03	irgsp1_rep	CDS	1025833	1026080	.	-	0	Parent=Os03t0119000-01
Chr03	irgsp1_rep	CDS	1025544	1025730	.	-	1	Parent=Os03t0119000-01
Chr03	irgsp1_rep	CDS	1024889	1025011	.	-	0	Parent=Os03t0119000-01
Chr03	irgsp1_rep	three_prime_UTR	1024732	1024888	.	-	.	Parent=Os03t0119000-01
Chr03	irgsp1_rep	mRNA	1027590	1031440	.	-	.	ID=Os03t0119100-01;Name=Os03t0119100-01;Locus_id=Os03g0119100;CGSNL Gene Symbol=PLDbeta2;CGSNL Gene Name=PHOSPHOLIPASE D beta 2;Oryzabase Gene Symbol Synonym(s)=OsPLDbeta2%2C OsSTA86;Note=Similar to Phospholipase D beta 2.;Transcript_evidence=AK069519 (DDBJ%2C Best hit);ORF_evidence=Q8SAG7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: phosphatidylcholine metabolic process (GO:0046470),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phospholipase D activity (GO:0004630),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),Phospholipase D/Transphosphatidylase (IPR001736),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),Phospholipase D%2C plant (IPR011402),Phospholipase D (IPR015679),C2 membrane targeting protein (IPR018029),Phospholipase D%2C C-terminal (IPR024632);NIAS_FLcDNA=J023024E17;Oryzabase=8696;Expression=AK069519;TENOR=Os03t0119100-01;KEGG=Os03t0119100-01 (EC:3.1.4.4)
Chr03	irgsp1_rep	five_prime_UTR	1031440	1031440	.	-	.	Parent=Os03t0119100-01
Chr03	irgsp1_rep	CDS	1030522	1031439	.	-	0	Parent=Os03t0119100-01
Chr03	irgsp1_rep	CDS	1030186	1030302	.	-	0	Parent=Os03t0119100-01
Chr03	irgsp1_rep	CDS	1029833	1030027	.	-	0	Parent=Os03t0119100-01
Chr03	irgsp1_rep	CDS	1029485	1029733	.	-	0	Parent=Os03t0119100-01
Chr03	irgsp1_rep	CDS	1029332	1029400	.	-	0	Parent=Os03t0119100-01
Chr03	irgsp1_rep	CDS	1029097	1029244	.	-	0	Parent=Os03t0119100-01
Chr03	irgsp1_rep	CDS	1028722	1028870	.	-	2	Parent=Os03t0119100-01
Chr03	irgsp1_rep	CDS	1028420	1028590	.	-	0	Parent=Os03t0119100-01
Chr03	irgsp1_rep	CDS	1028121	1028318	.	-	0	Parent=Os03t0119100-01
Chr03	irgsp1_rep	CDS	1027750	1028043	.	-	0	Parent=Os03t0119100-01
Chr03	irgsp1_rep	three_prime_UTR	1027590	1027749	.	-	.	Parent=Os03t0119100-01
Chr03	irgsp1_rep	mRNA	1034068	1036671	.	-	.	ID=Os03t0119300-01;Name=Os03t0119300-01;Locus_id=Os03g0119300;Oryzabase Gene Symbol Synonym(s)=OsSub25%2C SUB25;Oryzabase Gene Name Synonym(s)=Subtilisin 25%2C SUBTILISIN 25;Note=Peptidase S8%2C subtilisin-related domain containing protein.;Transcript_evidence=AK069220 (DDBJ%2C Best hit);ORF_evidence=NP_001148151.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C  Asp-active site (IPR023827);NIAS_FLcDNA=J023012L19;Oryzabase=20113;Expression=AK069220;TENOR=Os03t0119300-01;KEGG=Os03t0119300-01
Chr03	irgsp1_rep	five_prime_UTR	1036564	1036671	.	-	.	Parent=Os03t0119300-01
Chr03	irgsp1_rep	CDS	1034299	1036563	.	-	0	Parent=Os03t0119300-01
Chr03	irgsp1_rep	three_prime_UTR	1034068	1034298	.	-	.	Parent=Os03t0119300-01
Chr03	irgsp1_rep	mRNA	1047123	1047672	.	-	.	ID=Os03t0119400-00;Name=Os03t0119400-00;Locus_id=Os03g0119400;Note=Conserved hypothetical protein.;Transcript_evidence=EU953014 (DDBJ);ORF_evidence=Q5JMG4 (UniProt);TENOR=Os03t0119400-00
Chr03	irgsp1_rep	five_prime_UTR	1047655	1047672	.	-	.	Parent=Os03t0119400-00
Chr03	irgsp1_rep	CDS	1047454	1047654	.	-	0	Parent=Os03t0119400-00
Chr03	irgsp1_rep	three_prime_UTR	1047123	1047453	.	-	.	Parent=Os03t0119400-00
Chr03	irgsp1_rep	mRNA	1049042	1075622	.	+	.	ID=Os03t0119500-01;Name=Os03t0119500-01;Locus_id=Os03g0119500;RAP-DB Gene Symbol Synonym(s)=CRR1;RAP-DB Gene Name Synonym(s)=cannot reach the roof 1;CGSNL Gene Symbol=GSL8;CGSNL Gene Name=BETA-1%2C3-GLUCANASE ACTIVITY 8;Oryzabase Gene Symbol Synonym(s)=OsGSL8%2C OsGSC%2C GSC%2C CRR1%2C OsCRR1;Oryzabase Gene Name Synonym(s)=Oryza sativa callose synthase 8%2C callose synthase 8%2C "1%2C 3-beta-glucan synthase component"%2C cannot reach the roof 1;Note=Callose synthase%2C Ovary expansion by affecting vascular cell patterning;Transcript_evidence=XM_015775139;ORF_evidence=XP_015630625;GO=Biological Process: (1->3)-beta-D-glucan biosynthetic process (GO:0006075),Molecular Function: 1%2C3-beta-D-glucan synthase activity (GO:0003843),Cellular Component: 1%2C3-beta-D-glucan synthase complex (GO:0000148),Cellular Component: membrane (GO:0016020);InterPro=Glycosyl transferase%2C family 48 (IPR003440),1%2C3-beta-glucan synthase subunit FKS1-like%2C domain-1 (IPR026899);NIAS_FLcDNA=J023020O14 (truncated);Manual Curation=November 17%2C 2016;Literature_PMID=27464824;Oryzabase=8543;Expression=AK069531;TENOR=Os03t0119500-01;KEGG=Os03t0119500-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	1049042	1049295	.	+	.	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1049296	1049494	.	+	0	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1050745	1050842	.	+	2	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1051318	1051481	.	+	0	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1051637	1051760	.	+	1	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1052875	1052985	.	+	0	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1053082	1053207	.	+	0	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1054762	1054851	.	+	0	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1055102	1055199	.	+	0	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1055291	1055408	.	+	1	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1056745	1056870	.	+	0	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1056959	1057035	.	+	0	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1057122	1057200	.	+	1	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1057711	1057827	.	+	0	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1058322	1058424	.	+	0	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1058536	1058659	.	+	2	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1058903	1059080	.	+	1	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1059187	1059239	.	+	0	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1059329	1059389	.	+	1	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1059466	1059547	.	+	0	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1059817	1059866	.	+	2	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1060630	1060716	.	+	0	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1061097	1061182	.	+	0	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1061257	1061281	.	+	1	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1062205	1062299	.	+	0	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1062388	1062469	.	+	1	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1062584	1062744	.	+	0	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1062856	1062976	.	+	1	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1064106	1064203	.	+	0	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1064314	1064404	.	+	1	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1064516	1064676	.	+	0	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1065482	1065591	.	+	1	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1065829	1065963	.	+	2	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1066252	1066320	.	+	2	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1066404	1066584	.	+	2	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1066758	1066872	.	+	1	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1067260	1067379	.	+	0	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1067824	1067939	.	+	0	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1068031	1068114	.	+	1	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1068199	1068311	.	+	1	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1068862	1068914	.	+	2	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1069777	1069953	.	+	0	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1071323	1071370	.	+	0	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1071963	1072121	.	+	0	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1072519	1072632	.	+	0	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1072718	1072806	.	+	0	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1072882	1073040	.	+	1	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1073127	1073229	.	+	1	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1073769	1073888	.	+	0	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1074149	1074199	.	+	0	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1074290	1074472	.	+	0	Parent=Os03t0119500-01
Chr03	irgsp1_rep	CDS	1075126	1075362	.	+	0	Parent=Os03t0119500-01
Chr03	irgsp1_rep	three_prime_UTR	1075363	1075622	.	+	.	Parent=Os03t0119500-01
Chr03	irgsp1_rep	mRNA	1076081	1077338	.	-	.	ID=Os03t0119600-01;Name=Os03t0119600-01;Locus_id=Os03g0119600;Note=Hypothetical protein.;Transcript_evidence=AK108623 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-147-D08;Expression=AK108623;TENOR=Os03t0119600-01;KEGG=Os03t0119600-01
Chr03	irgsp1_rep	five_prime_UTR	1076444	1077338	.	-	.	Parent=Os03t0119600-01
Chr03	irgsp1_rep	CDS	1076126	1076443	.	-	0	Parent=Os03t0119600-01
Chr03	irgsp1_rep	three_prime_UTR	1076081	1076125	.	-	.	Parent=Os03t0119600-01
Chr03	irgsp1_rep	mRNA	1076133	1079259	.	+	.	ID=Os03t0119700-01;Name=Os03t0119700-01;Locus_id=Os03g0119700;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK119410 (DDBJ%2C Best hit);ORF_evidence=Q8H046 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-132-F06;Expression=AK119410;TENOR=Os03t0119700-01;KEGG=Os03t0119700-01
Chr03	irgsp1_rep	five_prime_UTR	1076133	1076171	.	+	.	Parent=Os03t0119700-01
Chr03	irgsp1_rep	CDS	1076172	1077482	.	+	0	Parent=Os03t0119700-01
Chr03	irgsp1_rep	three_prime_UTR	1077483	1079259	.	+	.	Parent=Os03t0119700-01
Chr03	irgsp1_rep	mRNA	1076187	1078246	.	+	.	ID=Os03t0119700-02;Name=Os03t0119700-02;Locus_id=Os03g0119700;Note=Hypothetical conserved gene.;Transcript_evidence=AK105249 (DDBJ%2C Best hit);ORF_evidence=Q8H046 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-114-B06;Expression=AK105249;TENOR=Os03t0119700-02;KEGG=Os03t0119700-02
Chr03	irgsp1_rep	CDS	1076187	1077482	.	+	0	Parent=Os03t0119700-02
Chr03	irgsp1_rep	three_prime_UTR	1077483	1078246	.	+	.	Parent=Os03t0119700-02
Chr03	irgsp1_rep	mRNA	1077878	1079254	.	-	.	ID=Os03t0119800-01;Name=Os03t0119800-01;Locus_id=Os03g0119800;Note=Conserved hypothetical protein.;Transcript_evidence=AK107249 (DDBJ%2C Best hit);ORF_evidence=B9FAH8 (UniProt);NIAS_FLcDNA=002-125-G01;Expression=AK107249;TENOR=Os03t0119800-01;KEGG=Os03t0119800-01
Chr03	irgsp1_rep	five_prime_UTR	1078695	1079254	.	-	.	Parent=Os03t0119800-01
Chr03	irgsp1_rep	CDS	1078329	1078694	.	-	0	Parent=Os03t0119800-01
Chr03	irgsp1_rep	three_prime_UTR	1077878	1078328	.	-	.	Parent=Os03t0119800-01
Chr03	irgsp1_rep	mRNA	1080801	1081326	.	+	.	ID=Os03t0119900-01;Name=Os03t0119900-01;Locus_id=Os03g0119900;Note=Similar to Histone H4.;Transcript_evidence=AK058741 (DDBJ%2C Best hit);ORF_evidence=XP_002310853.1 (RefSeq);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H4 (IPR001951),Histone core (IPR007125),Histone-fold (IPR009072),Histone H4%2C conserved site (IPR019809);NIAS_FLcDNA=001-019-G08;Expression=AK058741;TENOR=Os03t0119900-01;KEGG=Os03t0119900-01
Chr03	irgsp1_rep	five_prime_UTR	1080801	1080867	.	+	.	Parent=Os03t0119900-01
Chr03	irgsp1_rep	CDS	1080868	1081179	.	+	0	Parent=Os03t0119900-01
Chr03	irgsp1_rep	three_prime_UTR	1081180	1081326	.	+	.	Parent=Os03t0119900-01
Chr03	irgsp1_rep	mRNA	1089453	1093410	.	+	.	ID=Os03t0119966-01;Name=Os03t0119966-01;Locus_id=Os03g0119966;RAP-DB Gene Symbol Synonym(s)=RIM1%2C ONAC054%2C ONAC54%2C NAC54;RAP-DB Gene Name Synonym(s)=RICE DWARF VIRUS MULTIPLICATION 1%2C NAC domain-containing protein 054%2C NAC domain-containing protein 54;CGSNL Gene Symbol=RIM1;CGSNL Gene Name=RICE DWARF VIRUS MULTIPLICATION 1;Oryzabase Gene Symbol Synonym(s)=ONAC054%2C ONAC54%2C NAC54;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 054%2C NAC domain-containing protein 54;Note=NAC-domain protein%2C Resistance to rice dwarf virus%2C Regulator of jasmonate (JA) signaling;Transcript_evidence=AB265821 (Genbank);ORF_evidence=Q8H045 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);Manual Curation=November 13%2C 2009;Literature_PMID=18980655,20015061;Oryzabase=8754;TENOR=Os03t0119966-01
Chr03	irgsp1_rep	CDS	1089453	1089609	.	+	0	Parent=Os03t0119966-01
Chr03	irgsp1_rep	CDS	1091100	1091377	.	+	2	Parent=Os03t0119966-01
Chr03	irgsp1_rep	CDS	1091563	1091919	.	+	0	Parent=Os03t0119966-01
Chr03	irgsp1_rep	CDS	1092023	1092436	.	+	0	Parent=Os03t0119966-01
Chr03	irgsp1_rep	CDS	1092538	1092619	.	+	0	Parent=Os03t0119966-01
Chr03	irgsp1_rep	CDS	1092746	1093410	.	+	2	Parent=Os03t0119966-01
Chr03	irgsp1_rep	mRNA	1099335	1102869	.	+	.	ID=Os03t0120000-01;Name=Os03t0120000-01;Locus_id=Os03g0120000;Note=Conserved hypothetical protein.;Transcript_evidence=AK101925 (DDBJ%2C Best hit);ORF_evidence=Q10SK1 (UniProt);NIAS_FLcDNA=J033071P08;Expression=AK101925;TENOR=Os03t0120000-01;KEGG=Os03t0120000-01
Chr03	irgsp1_rep	five_prime_UTR	1099335	1099448	.	+	.	Parent=Os03t0120000-01
Chr03	irgsp1_rep	CDS	1099449	1099700	.	+	0	Parent=Os03t0120000-01
Chr03	irgsp1_rep	CDS	1099783	1099885	.	+	0	Parent=Os03t0120000-01
Chr03	irgsp1_rep	CDS	1100238	1100311	.	+	2	Parent=Os03t0120000-01
Chr03	irgsp1_rep	three_prime_UTR	1100312	1100645	.	+	.	Parent=Os03t0120000-01
Chr03	irgsp1_rep	three_prime_UTR	1100735	1100806	.	+	.	Parent=Os03t0120000-01
Chr03	irgsp1_rep	three_prime_UTR	1101146	1101235	.	+	.	Parent=Os03t0120000-01
Chr03	irgsp1_rep	three_prime_UTR	1101337	1102006	.	+	.	Parent=Os03t0120000-01
Chr03	irgsp1_rep	three_prime_UTR	1102165	1102274	.	+	.	Parent=Os03t0120000-01
Chr03	irgsp1_rep	three_prime_UTR	1102379	1102869	.	+	.	Parent=Os03t0120000-01
Chr03	irgsp1_rep	mRNA	1102854	1106636	.	-	.	ID=Os03t0120100-01;Name=Os03t0120100-01;Locus_id=Os03g0120100;Note=Protein of unknown function DUF284%2C transmembrane eukaryotic family protein.;Transcript_evidence=AK110743 (DDBJ%2C Best hit);ORF_evidence=B4FDP2 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Protein of unknown function DUF284%2C transmembrane eukaryotic (IPR005045);NIAS_FLcDNA=002-170-F10;Expression=AK110743;TENOR=Os03t0120100-01;KEGG=Os03t0120100-01
Chr03	irgsp1_rep	five_prime_UTR	1106473	1106636	.	-	.	Parent=Os03t0120100-01
Chr03	irgsp1_rep	CDS	1105869	1105923	.	-	0	Parent=Os03t0120100-01
Chr03	irgsp1_rep	CDS	1105699	1105757	.	-	2	Parent=Os03t0120100-01
Chr03	irgsp1_rep	CDS	1105522	1105596	.	-	0	Parent=Os03t0120100-01
Chr03	irgsp1_rep	CDS	1105325	1105432	.	-	0	Parent=Os03t0120100-01
Chr03	irgsp1_rep	CDS	1105109	1105179	.	-	0	Parent=Os03t0120100-01
Chr03	irgsp1_rep	CDS	1104567	1104867	.	-	1	Parent=Os03t0120100-01
Chr03	irgsp1_rep	CDS	1104167	1104459	.	-	0	Parent=Os03t0120100-01
Chr03	irgsp1_rep	CDS	1103103	1103163	.	-	1	Parent=Os03t0120100-01
Chr03	irgsp1_rep	three_prime_UTR	1102854	1103102	.	-	.	Parent=Os03t0120100-01
Chr03	irgsp1_rep	mRNA	1109246	1113045	.	-	.	ID=Os03t0120200-01;Name=Os03t0120200-01;Locus_id=Os03g0120200;CGSNL Gene Symbol=REM6.2;CGSNL Gene Name=REMORIN 6.2;Oryzabase Gene Symbol Synonym(s)=OsREM6.2;Oryzabase Gene Name Synonym(s)=Remorin 6.2%2C remorin group 6 member 2;Note=Remorin%2C C-terminal region domain containing protein.;Transcript_evidence=AK121787 (DDBJ%2C Best hit);ORF_evidence=Q10SJ7 (UniProt);InterPro=Remorin%2C C-terminal (IPR005516);NIAS_FLcDNA=J033094C20;Oryzabase=20279;Expression=AK121787;TENOR=Os03t0120200-01;KEGG=Os03t0120200-01
Chr03	irgsp1_rep	five_prime_UTR	1112874	1113045	.	-	.	Parent=Os03t0120200-01
Chr03	irgsp1_rep	CDS	1112832	1112873	.	-	0	Parent=Os03t0120200-01
Chr03	irgsp1_rep	CDS	1111867	1111984	.	-	0	Parent=Os03t0120200-01
Chr03	irgsp1_rep	CDS	1111411	1111782	.	-	2	Parent=Os03t0120200-01
Chr03	irgsp1_rep	CDS	1110254	1110707	.	-	2	Parent=Os03t0120200-01
Chr03	irgsp1_rep	CDS	1109907	1109988	.	-	1	Parent=Os03t0120200-01
Chr03	irgsp1_rep	CDS	1109380	1109583	.	-	0	Parent=Os03t0120200-01
Chr03	irgsp1_rep	three_prime_UTR	1109246	1109379	.	-	.	Parent=Os03t0120200-01
Chr03	irgsp1_rep	mRNA	1109246	1112833	.	-	.	ID=Os03t0120200-02;Name=Os03t0120200-02;Locus_id=Os03g0120200;CGSNL Gene Symbol=REM6.2;CGSNL Gene Name=REMORIN 6.2;Oryzabase Gene Symbol Synonym(s)=OsREM6.2;Oryzabase Gene Name Synonym(s)=Remorin 6.2%2C remorin group 6 member 2;Note=Similar to Remorin%2C C-terminal region family protein%2C expressed.;Transcript_evidence=AK102865 (DDBJ%2C Best hit);ORF_evidence=Q10SJ7 (UniProt);InterPro=Remorin%2C C-terminal (IPR005516);NIAS_FLcDNA=J033111K19;Oryzabase=20279;Expression=AK102865;TENOR=Os03t0120200-02;KEGG=Os03t0120200-02
Chr03	irgsp1_rep	five_prime_UTR	1112084	1112833	.	-	.	Parent=Os03t0120200-02
Chr03	irgsp1_rep	five_prime_UTR	1111952	1111984	.	-	.	Parent=Os03t0120200-02
Chr03	irgsp1_rep	CDS	1111867	1111951	.	-	0	Parent=Os03t0120200-02
Chr03	irgsp1_rep	CDS	1111411	1111782	.	-	2	Parent=Os03t0120200-02
Chr03	irgsp1_rep	CDS	1110254	1110707	.	-	2	Parent=Os03t0120200-02
Chr03	irgsp1_rep	CDS	1109907	1109988	.	-	1	Parent=Os03t0120200-02
Chr03	irgsp1_rep	CDS	1109380	1109583	.	-	0	Parent=Os03t0120200-02
Chr03	irgsp1_rep	three_prime_UTR	1109246	1109379	.	-	.	Parent=Os03t0120200-02
Chr03	irgsp1_rep	mRNA	1109242	1112973	.	-	.	ID=Os03t0120200-03;Name=Os03t0120200-03;Locus_id=Os03g0120200;CGSNL Gene Symbol=REM6.2;CGSNL Gene Name=REMORIN 6.2;Oryzabase Gene Symbol Synonym(s)=OsREM6.2;Oryzabase Gene Name Synonym(s)=Remorin 6.2%2C remorin group 6 member 2;Note=Remorin%2C C-terminal region domain containing protein.;Transcript_evidence=AK058771 (DDBJ%2C Best hit);ORF_evidence=Q10SJ7 (UniProt);InterPro=Remorin%2C C-terminal (IPR005516);NIAS_FLcDNA=001-001-H05;Oryzabase=20279;TENOR=Os03t0120200-03
Chr03	irgsp1_rep	five_prime_UTR	1112874	1112973	.	-	.	Parent=Os03t0120200-03
Chr03	irgsp1_rep	CDS	1112832	1112873	.	-	0	Parent=Os03t0120200-03
Chr03	irgsp1_rep	CDS	1111867	1111984	.	-	0	Parent=Os03t0120200-03
Chr03	irgsp1_rep	CDS	1111411	1111782	.	-	2	Parent=Os03t0120200-03
Chr03	irgsp1_rep	CDS	1110254	1110707	.	-	2	Parent=Os03t0120200-03
Chr03	irgsp1_rep	CDS	1109907	1109988	.	-	1	Parent=Os03t0120200-03
Chr03	irgsp1_rep	CDS	1109380	1109583	.	-	0	Parent=Os03t0120200-03
Chr03	irgsp1_rep	three_prime_UTR	1109242	1109379	.	-	.	Parent=Os03t0120200-03
Chr03	irgsp1_rep	mRNA	1119802	1123751	.	-	.	ID=Os03t0120300-01;Name=Os03t0120300-01;Locus_id=Os03g0120300;Note=Protein of unknown function DUF1084 family protein.;Transcript_evidence=AK066854 (DDBJ%2C Best hit);ORF_evidence=Q402F3 (UniProt);InterPro=Domain of unknown function DUF1084 (IPR009457);NIAS_FLcDNA=J013075C10;Expression=AK066854;TENOR=Os03t0120300-01;KEGG=Os03t0120300-01
Chr03	irgsp1_rep	five_prime_UTR	1123485	1123751	.	-	.	Parent=Os03t0120300-01
Chr03	irgsp1_rep	CDS	1123356	1123484	.	-	0	Parent=Os03t0120300-01
Chr03	irgsp1_rep	CDS	1123001	1123091	.	-	0	Parent=Os03t0120300-01
Chr03	irgsp1_rep	CDS	1122856	1122908	.	-	2	Parent=Os03t0120300-01
Chr03	irgsp1_rep	CDS	1122666	1122758	.	-	0	Parent=Os03t0120300-01
Chr03	irgsp1_rep	CDS	1122516	1122587	.	-	0	Parent=Os03t0120300-01
Chr03	irgsp1_rep	CDS	1121872	1121944	.	-	0	Parent=Os03t0120300-01
Chr03	irgsp1_rep	CDS	1121549	1121594	.	-	2	Parent=Os03t0120300-01
Chr03	irgsp1_rep	CDS	1121243	1121306	.	-	1	Parent=Os03t0120300-01
Chr03	irgsp1_rep	CDS	1121107	1121160	.	-	0	Parent=Os03t0120300-01
Chr03	irgsp1_rep	CDS	1120954	1121031	.	-	0	Parent=Os03t0120300-01
Chr03	irgsp1_rep	CDS	1120122	1120214	.	-	0	Parent=Os03t0120300-01
Chr03	irgsp1_rep	three_prime_UTR	1119802	1120121	.	-	.	Parent=Os03t0120300-01
Chr03	irgsp1_rep	mRNA	1119840	1123660	.	-	.	ID=Os03t0120300-02;Name=Os03t0120300-02;Locus_id=Os03g0120300;Note=Protein of unknown function DUF1084 family protein.;Transcript_evidence=AK104882 (DDBJ%2C Best hit);ORF_evidence=Q402F3 (UniProt);InterPro=Domain of unknown function DUF1084 (IPR009457);NIAS_FLcDNA=001-044-H04;Expression=AK104882;TENOR=Os03t0120300-02;KEGG=Os03t0120300-02
Chr03	irgsp1_rep	five_prime_UTR	1123485	1123660	.	-	.	Parent=Os03t0120300-02
Chr03	irgsp1_rep	CDS	1123356	1123484	.	-	0	Parent=Os03t0120300-02
Chr03	irgsp1_rep	CDS	1123001	1123091	.	-	0	Parent=Os03t0120300-02
Chr03	irgsp1_rep	CDS	1122856	1122908	.	-	2	Parent=Os03t0120300-02
Chr03	irgsp1_rep	CDS	1122666	1122758	.	-	0	Parent=Os03t0120300-02
Chr03	irgsp1_rep	CDS	1122516	1122587	.	-	0	Parent=Os03t0120300-02
Chr03	irgsp1_rep	CDS	1121872	1121944	.	-	0	Parent=Os03t0120300-02
Chr03	irgsp1_rep	CDS	1121549	1121594	.	-	2	Parent=Os03t0120300-02
Chr03	irgsp1_rep	CDS	1121243	1121306	.	-	1	Parent=Os03t0120300-02
Chr03	irgsp1_rep	CDS	1121107	1121160	.	-	0	Parent=Os03t0120300-02
Chr03	irgsp1_rep	CDS	1120954	1121031	.	-	0	Parent=Os03t0120300-02
Chr03	irgsp1_rep	CDS	1120122	1120214	.	-	0	Parent=Os03t0120300-02
Chr03	irgsp1_rep	three_prime_UTR	1119840	1120121	.	-	.	Parent=Os03t0120300-02
Chr03	irgsp1_rep	mRNA	1119962	1123541	.	+	.	ID=Os03t0120350-00;Name=Os03t0120350-00;Locus_id=Os03g0120350;Note=Hypothetical protein.;Transcript_evidence=tplb0046l08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0120350-00
Chr03	irgsp1_rep	five_prime_UTR	1119962	1120198	.	+	.	Parent=Os03t0120350-00
Chr03	irgsp1_rep	five_prime_UTR	1120937	1121065	.	+	.	Parent=Os03t0120350-00
Chr03	irgsp1_rep	five_prime_UTR	1121223	1121335	.	+	.	Parent=Os03t0120350-00
Chr03	irgsp1_rep	five_prime_UTR	1121852	1121937	.	+	.	Parent=Os03t0120350-00
Chr03	irgsp1_rep	five_prime_UTR	1122512	1122583	.	+	.	Parent=Os03t0120350-00
Chr03	irgsp1_rep	five_prime_UTR	1122656	1122773	.	+	.	Parent=Os03t0120350-00
Chr03	irgsp1_rep	five_prime_UTR	1122954	1122966	.	+	.	Parent=Os03t0120350-00
Chr03	irgsp1_rep	CDS	1122967	1123089	.	+	0	Parent=Os03t0120350-00
Chr03	irgsp1_rep	CDS	1123354	1123541	.	+	0	Parent=Os03t0120350-00
Chr03	irgsp1_rep	mRNA	1124982	1127056	.	-	.	ID=Os03t0120400-01;Name=Os03t0120400-01;Locus_id=Os03g0120400;CGSNL Gene Symbol=HMP17;CGSNL Gene Name=HEAVY METAL-ASSOCIATED PROTEIN 17;Oryzabase Gene Symbol Synonym(s)=OsHMP17;Oryzabase Gene Name Synonym(s)=Heavy metal-associated protein 17;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK070517 (DDBJ%2C Best hit);ORF_evidence=B6T4Q0 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);NIAS_FLcDNA=J023056A13;Oryzabase=23539;Expression=AK070517;TENOR=Os03t0120400-01;KEGG=Os03t0120400-01
Chr03	irgsp1_rep	five_prime_UTR	1126849	1127056	.	-	.	Parent=Os03t0120400-01
Chr03	irgsp1_rep	CDS	1126660	1126848	.	-	0	Parent=Os03t0120400-01
Chr03	irgsp1_rep	CDS	1126018	1126093	.	-	0	Parent=Os03t0120400-01
Chr03	irgsp1_rep	CDS	1125322	1125638	.	-	2	Parent=Os03t0120400-01
Chr03	irgsp1_rep	three_prime_UTR	1124982	1125321	.	-	.	Parent=Os03t0120400-01
Chr03	irgsp1_rep	mRNA	1125324	1126855	.	+	.	ID=Os03t0120425-00;Name=Os03t0120425-00;Locus_id=Os03g0120425;Note=Non-protein coding transcript.;Transcript_evidence=EU943530 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0120425-00
Chr03	irgsp1_rep	exon	1125324	1125637	.	+	.	Parent=Os03t0120425-00
Chr03	irgsp1_rep	exon	1126017	1126091	.	+	.	Parent=Os03t0120425-00
Chr03	irgsp1_rep	exon	1126197	1126855	.	+	.	Parent=Os03t0120425-00
Chr03	irgsp1_rep	mRNA	1129985	1131399	.	-	.	ID=Os03t0120501-01;Name=Os03t0120501-01;Locus_id=Os03g0120501;Note=Non-protein coding transcript.;Transcript_evidence=AK241344 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065147J03;TENOR=Os03t0120501-01
Chr03	irgsp1_rep	exon	1130368	1131399	.	-	.	Parent=Os03t0120501-01
Chr03	irgsp1_rep	exon	1129985	1130264	.	-	.	Parent=Os03t0120501-01
Chr03	irgsp1_rep	mRNA	1137129	1141062	.	+	.	ID=Os03t0120800-01;Name=Os03t0120800-01;Locus_id=Os03g0120800;Note=Conserved hypothetical protein.;Transcript_evidence=AK101369 (DDBJ%2C Best hit);ORF_evidence=B9FAI2 (UniProt);NIAS_FLcDNA=J033035M16;TENOR=Os03t0120800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	1137129	1137149	.	+	.	Parent=Os03t0120800-01
Chr03	irgsp1_rep	CDS	1137150	1137407	.	+	0	Parent=Os03t0120800-01
Chr03	irgsp1_rep	CDS	1137975	1138124	.	+	0	Parent=Os03t0120800-01
Chr03	irgsp1_rep	three_prime_UTR	1138125	1138891	.	+	.	Parent=Os03t0120800-01
Chr03	irgsp1_rep	three_prime_UTR	1139734	1139896	.	+	.	Parent=Os03t0120800-01
Chr03	irgsp1_rep	three_prime_UTR	1139985	1140814	.	+	.	Parent=Os03t0120800-01
Chr03	irgsp1_rep	three_prime_UTR	1140879	1141062	.	+	.	Parent=Os03t0120800-01
Chr03	irgsp1_rep	mRNA	1152918	1154697	.	+	.	ID=Os03t0120900-01;Name=Os03t0120900-01;Locus_id=Os03g0120900;Note=Similar to AP2 domain containing protein RAP2.8 (Fragment).;Transcript_evidence=AK106367 (DDBJ%2C Best hit);ORF_evidence=D9MNL6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=002-102-B12;Oryzabase=22352;Expression=AK106367;TENOR=Os03t0120900-01;KEGG=Os03t0120900-01
Chr03	irgsp1_rep	five_prime_UTR	1152918	1153380	.	+	.	Parent=Os03t0120900-01
Chr03	irgsp1_rep	CDS	1153381	1154316	.	+	0	Parent=Os03t0120900-01
Chr03	irgsp1_rep	three_prime_UTR	1154317	1154697	.	+	.	Parent=Os03t0120900-01
Chr03	irgsp1_rep	mRNA	1172250	1176178	.	-	.	ID=Os03t0121200-01;Name=Os03t0121200-01;Locus_id=Os03g0121200;Oryzabase Gene Symbol Synonym(s)=prx33;Oryzabase Gene Name Synonym(s)=class III peroxidase 33;Note=Similar to Peroxidase 1.;Transcript_evidence=AK103660 (DDBJ%2C Best hit),AK073847 (DDBJ%2C Best hit);ORF_evidence=Q8LMR7 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J033135H09,J033069F06;Oryzabase=14560;TENOR=Os03t0121200-01
Chr03	irgsp1_rep	five_prime_UTR	1176018	1176178	.	-	.	Parent=Os03t0121200-01
Chr03	irgsp1_rep	CDS	1175790	1176017	.	-	0	Parent=Os03t0121200-01
Chr03	irgsp1_rep	CDS	1175001	1175189	.	-	0	Parent=Os03t0121200-01
Chr03	irgsp1_rep	CDS	1172597	1173175	.	-	0	Parent=Os03t0121200-01
Chr03	irgsp1_rep	three_prime_UTR	1172250	1172596	.	-	.	Parent=Os03t0121200-01
Chr03	irgsp1_rep	mRNA	1173801	1176175	.	-	.	ID=Os03t0121200-02;Name=Os03t0121200-02;Locus_id=Os03g0121200;Oryzabase Gene Symbol Synonym(s)=prx33;Oryzabase Gene Name Synonym(s)=class III peroxidase 33;Note=Similar to Class III peroxidase 33.;Transcript_evidence=AK120013 (DDBJ%2C Best hit);ORF_evidence=Q8LMR7 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=002-186-B02;Oryzabase=14560;Expression=AK120013;TENOR=Os03t0121200-02;KEGG=Os03t0121200-02 (EC:1.11.1.7)
Chr03	irgsp1_rep	five_prime_UTR	1176018	1176175	.	-	.	Parent=Os03t0121200-02
Chr03	irgsp1_rep	CDS	1175733	1176017	.	-	0	Parent=Os03t0121200-02
Chr03	irgsp1_rep	three_prime_UTR	1173801	1175732	.	-	.	Parent=Os03t0121200-02
Chr03	irgsp1_rep	mRNA	1172312	1175883	.	-	.	ID=Os03t0121200-03;Name=Os03t0121200-03;Locus_id=Os03g0121200;Oryzabase Gene Symbol Synonym(s)=prx33;Oryzabase Gene Name Synonym(s)=class III peroxidase 33;Note=Similar to Class III peroxidase 33.;Transcript_evidence=AK060028 (DDBJ%2C Best hit);ORF_evidence=Q8LMR7 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=006-303-F06;Oryzabase=14560;Expression=AK060028;TENOR=Os03t0121200-03;KEGG=Os03t0121200-03
Chr03	irgsp1_rep	five_prime_UTR	1175883	1175883	.	-	.	Parent=Os03t0121200-03
Chr03	irgsp1_rep	CDS	1175790	1175882	.	-	0	Parent=Os03t0121200-03
Chr03	irgsp1_rep	CDS	1175001	1175189	.	-	0	Parent=Os03t0121200-03
Chr03	irgsp1_rep	CDS	1172597	1173175	.	-	0	Parent=Os03t0121200-03
Chr03	irgsp1_rep	three_prime_UTR	1172312	1172596	.	-	.	Parent=Os03t0121200-03
Chr03	irgsp1_rep	mRNA	1172587	1176015	.	+	.	ID=Os03t0121250-00;Name=Os03t0121250-00;Locus_id=Os03g0121250;Note=Hypothetical protein.;Transcript_evidence=tplb0030i03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0121250-00
Chr03	irgsp1_rep	five_prime_UTR	1172587	1172587	.	+	.	Parent=Os03t0121250-00
Chr03	irgsp1_rep	CDS	1172588	1173157	.	+	0	Parent=Os03t0121250-00
Chr03	irgsp1_rep	CDS	1174988	1175098	.	+	0	Parent=Os03t0121250-00
Chr03	irgsp1_rep	three_prime_UTR	1175099	1175180	.	+	.	Parent=Os03t0121250-00
Chr03	irgsp1_rep	three_prime_UTR	1175777	1176015	.	+	.	Parent=Os03t0121250-00
Chr03	irgsp1_rep	mRNA	1178482	1180131	.	-	.	ID=Os03t0121300-01;Name=Os03t0121300-01;Locus_id=Os03g0121300;Oryzabase Gene Symbol Synonym(s)=prx34%2C OsPrx34;Oryzabase Gene Name Synonym(s)=class III peroxidase 34;Note=Similar to Peroxidase 1.;Transcript_evidence=AK064633 (DDBJ%2C Best hit);ORF_evidence=Q8LMR7 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=002-113-H03;Oryzabase=14561;Expression=AK064633;TENOR=Os03t0121300-01;KEGG=Os03t0121300-01
Chr03	irgsp1_rep	five_prime_UTR	1180084	1180131	.	-	.	Parent=Os03t0121300-01
Chr03	irgsp1_rep	CDS	1179871	1180083	.	-	0	Parent=Os03t0121300-01
Chr03	irgsp1_rep	CDS	1179567	1179755	.	-	0	Parent=Os03t0121300-01
Chr03	irgsp1_rep	CDS	1179329	1179494	.	-	0	Parent=Os03t0121300-01
Chr03	irgsp1_rep	CDS	1178623	1179023	.	-	2	Parent=Os03t0121300-01
Chr03	irgsp1_rep	three_prime_UTR	1178482	1178622	.	-	.	Parent=Os03t0121300-01
Chr03	irgsp1_rep	mRNA	1178482	1179001	.	-	.	ID=Os03t0121300-02;Name=Os03t0121300-02;Locus_id=Os03g0121300;Oryzabase Gene Symbol Synonym(s)=prx34%2C OsPrx34;Oryzabase Gene Name Synonym(s)=class III peroxidase 34;Note=Similar to Peroxidase 5.;Transcript_evidence=AK120047 (DDBJ%2C Best hit);ORF_evidence=A7QEU4 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255);NIAS_FLcDNA=002-188-H03;Oryzabase=14561;Expression=AK120047;TENOR=Os03t0121300-02;KEGG=Os03t0121300-02 (EC:1.11.1.7)
Chr03	irgsp1_rep	five_prime_UTR	1179001	1179001	.	-	.	Parent=Os03t0121300-02
Chr03	irgsp1_rep	CDS	1178623	1179000	.	-	0	Parent=Os03t0121300-02
Chr03	irgsp1_rep	three_prime_UTR	1178482	1178622	.	-	.	Parent=Os03t0121300-02
Chr03	irgsp1_rep	mRNA	1194347	1195744	.	+	.	ID=Os03t0121700-01;Name=Os03t0121700-01;Locus_id=Os03g0121700;Oryzabase Gene Name Synonym(s)=NAC-like protein%2C nascent polypeptide-associated complex alpha chain;Note=Similar to Nascent polypeptide-associated complex alpha subunit-like protein 3 (NAC-alpha-like protein 3) (Alpha-NAC-like protein 3).;Transcript_evidence=AK059982 (DDBJ%2C Best hit),AK099300 (DDBJ%2C Best hit);ORF_evidence=NP_001147705.1 (RefSeq);InterPro=Nascent polypeptide-associated complex NAC (IPR002715),Nascent polypeptide-associated complex%2C alpha subunit (IPR016641);NIAS_FLcDNA=006-212-E10,J023142E05;Oryzabase=16039;TENOR=Os03t0121700-01
Chr03	irgsp1_rep	five_prime_UTR	1194347	1194413	.	+	.	Parent=Os03t0121700-01
Chr03	irgsp1_rep	CDS	1194414	1194606	.	+	0	Parent=Os03t0121700-01
Chr03	irgsp1_rep	CDS	1194856	1194989	.	+	2	Parent=Os03t0121700-01
Chr03	irgsp1_rep	CDS	1195077	1195415	.	+	0	Parent=Os03t0121700-01
Chr03	irgsp1_rep	three_prime_UTR	1195416	1195744	.	+	.	Parent=Os03t0121700-01
Chr03	irgsp1_rep	mRNA	1195075	1204839	.	-	.	ID=Os03t0121800-01;Name=Os03t0121800-01;Locus_id=Os03g0121800;RAP-DB Gene Symbol Synonym(s)=DCL1%2C Dcl1%2C OsDCL1%2C osDCL1%2C Os-DCL1;RAP-DB Gene Name Synonym(s)=DICER-LIKE 1%2C Dicer like 1%2C Endoribonuclease Dicer homolog 1%2C Dicer-like protein 1;CGSNL Gene Symbol=DCL1;CGSNL Gene Name=DICER-LIKE 1;Oryzabase Gene Symbol Synonym(s)=Dcl1%2C OsDCL1%2C osDCL1%2C Os-DCL1%2C OsDCL1a%2C DCL1a;Oryzabase Gene Name Synonym(s)=Dicer like 1%2C Dicer-like 1%2C Endoribonuclease Dicer homolog 1%2C Dicer-like protein 1;Note=Dicer-like protein%2C miRNA biogenesis%2C Reguration of development;Transcript_evidence=Inferred from literature;ORF_evidence=Q8LMR2;GO=Biological Process: RNA processing (GO:0006396),Molecular Function: RNA binding (GO:0003723),Molecular Function: ribonuclease III activity (GO:0004525),Molecular Function: protein binding (GO:0005515),Molecular Function: endoribonuclease activity%2C producing 5'-phosphomonoesters (GO:0016891);InterPro=Helicase superfamily 1/2%2C ATP-binding domain (IPR014001),P-loop containing nucleoside triphosphate hydrolase (IPR027417),Helicase%2C C-terminal (IPR001650),Dicer dimerisation domain (IPR005034),PAZ domain (IPR003100),Ribonuclease III domain (IPR000999),Double-stranded RNA-binding domain (IPR014720);Manual Curation=March 24%2C 2015;Literature_PMID=21973320,18826656,16126864;Oryzabase=7188;TENOR=Os03t0121800-00
Chr03	irgsp1_rep	CDS	1203853	1204839	.	-	0	Parent=Os03t0121800-01
Chr03	irgsp1_rep	CDS	1202778	1202988	.	-	0	Parent=Os03t0121800-01
Chr03	irgsp1_rep	CDS	1202269	1202663	.	-	2	Parent=Os03t0121800-01
Chr03	irgsp1_rep	CDS	1201972	1202194	.	-	0	Parent=Os03t0121800-01
Chr03	irgsp1_rep	CDS	1201578	1201738	.	-	2	Parent=Os03t0121800-01
Chr03	irgsp1_rep	CDS	1201358	1201480	.	-	0	Parent=Os03t0121800-01
Chr03	irgsp1_rep	CDS	1201070	1201230	.	-	0	Parent=Os03t0121800-01
Chr03	irgsp1_rep	CDS	1200725	1200958	.	-	1	Parent=Os03t0121800-01
Chr03	irgsp1_rep	CDS	1200490	1200640	.	-	1	Parent=Os03t0121800-01
Chr03	irgsp1_rep	CDS	1200206	1200385	.	-	0	Parent=Os03t0121800-01
Chr03	irgsp1_rep	CDS	1199954	1200115	.	-	0	Parent=Os03t0121800-01
Chr03	irgsp1_rep	CDS	1199768	1199863	.	-	0	Parent=Os03t0121800-01
Chr03	irgsp1_rep	CDS	1199064	1199686	.	-	0	Parent=Os03t0121800-01
Chr03	irgsp1_rep	CDS	1198822	1198922	.	-	1	Parent=Os03t0121800-01
Chr03	irgsp1_rep	CDS	1198496	1198695	.	-	2	Parent=Os03t0121800-01
Chr03	irgsp1_rep	CDS	1196948	1197856	.	-	0	Parent=Os03t0121800-01
Chr03	irgsp1_rep	CDS	1196662	1196826	.	-	0	Parent=Os03t0121800-01
Chr03	irgsp1_rep	CDS	1196006	1196575	.	-	0	Parent=Os03t0121800-01
Chr03	irgsp1_rep	three_prime_UTR	1195075	1196005	.	-	.	Parent=Os03t0121800-01
Chr03	irgsp1_rep	mRNA	1211681	1217858	.	+	.	ID=Os03t0122000-01;Name=Os03t0122000-01;Locus_id=Os03g0122000;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK101458 (DDBJ%2C Best hit);ORF_evidence=B8ALX6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033040C13;Expression=AK101458;TENOR=Os03t0122000-01;KEGG=Os03t0122000-01
Chr03	irgsp1_rep	five_prime_UTR	1211681	1211726	.	+	.	Parent=Os03t0122000-01
Chr03	irgsp1_rep	CDS	1211727	1212014	.	+	0	Parent=Os03t0122000-01
Chr03	irgsp1_rep	CDS	1212135	1212258	.	+	0	Parent=Os03t0122000-01
Chr03	irgsp1_rep	CDS	1212380	1212438	.	+	2	Parent=Os03t0122000-01
Chr03	irgsp1_rep	CDS	1212882	1212946	.	+	0	Parent=Os03t0122000-01
Chr03	irgsp1_rep	CDS	1213155	1213248	.	+	1	Parent=Os03t0122000-01
Chr03	irgsp1_rep	CDS	1213322	1213402	.	+	0	Parent=Os03t0122000-01
Chr03	irgsp1_rep	CDS	1213493	1213604	.	+	0	Parent=Os03t0122000-01
Chr03	irgsp1_rep	CDS	1214266	1214353	.	+	2	Parent=Os03t0122000-01
Chr03	irgsp1_rep	CDS	1214757	1214878	.	+	1	Parent=Os03t0122000-01
Chr03	irgsp1_rep	CDS	1214953	1215290	.	+	2	Parent=Os03t0122000-01
Chr03	irgsp1_rep	CDS	1215896	1216187	.	+	0	Parent=Os03t0122000-01
Chr03	irgsp1_rep	CDS	1216263	1216333	.	+	2	Parent=Os03t0122000-01
Chr03	irgsp1_rep	CDS	1217299	1217523	.	+	0	Parent=Os03t0122000-01
Chr03	irgsp1_rep	three_prime_UTR	1217524	1217858	.	+	.	Parent=Os03t0122000-01
Chr03	irgsp1_rep	mRNA	1213320	1217860	.	+	.	ID=Os03t0122000-02;Name=Os03t0122000-02;Locus_id=Os03g0122000;Note=Hypothetical conserved gene.;Transcript_evidence=AK060784 (DDBJ%2C Best hit);ORF_evidence=B8ALX6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-033-D02;Expression=AK060784;TENOR=Os03t0122000-02;KEGG=Os03t0122000-02
Chr03	irgsp1_rep	five_prime_UTR	1213320	1213321	.	+	.	Parent=Os03t0122000-02
Chr03	irgsp1_rep	CDS	1213322	1213402	.	+	0	Parent=Os03t0122000-02
Chr03	irgsp1_rep	CDS	1213493	1213604	.	+	0	Parent=Os03t0122000-02
Chr03	irgsp1_rep	CDS	1214266	1214353	.	+	2	Parent=Os03t0122000-02
Chr03	irgsp1_rep	CDS	1214757	1214878	.	+	1	Parent=Os03t0122000-02
Chr03	irgsp1_rep	CDS	1214953	1215290	.	+	2	Parent=Os03t0122000-02
Chr03	irgsp1_rep	CDS	1215896	1216187	.	+	0	Parent=Os03t0122000-02
Chr03	irgsp1_rep	CDS	1216263	1216333	.	+	2	Parent=Os03t0122000-02
Chr03	irgsp1_rep	CDS	1217299	1217523	.	+	0	Parent=Os03t0122000-02
Chr03	irgsp1_rep	three_prime_UTR	1217524	1217860	.	+	.	Parent=Os03t0122000-02
Chr03	irgsp1_rep	mRNA	1215879	1216406	.	-	.	ID=Os03t0122034-00;Name=Os03t0122034-00;Locus_id=Os03g0122034;Note=Non-protein coding transcript.;Transcript_evidence=EU950997 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0122034-00
Chr03	irgsp1_rep	exon	1215879	1216406	.	-	.	Parent=Os03t0122034-00
Chr03	irgsp1_rep	mRNA	1226308	1229550	.	+	.	ID=Os03t0122100-00;Name=Os03t0122100-00;Locus_id=Os03g0122100;Oryzabase Gene Symbol Synonym(s)=OsbHLH052;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 052;Note=Similar to Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=tplb0048k24 (Wheat FLcDNA);ORF_evidence=Q8H8H9 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);Oryzabase=15343;TENOR=Os03t0122100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	1226308	1226442	.	+	.	Parent=Os03t0122100-00
Chr03	irgsp1_rep	CDS	1226443	1226481	.	+	0	Parent=Os03t0122100-00
Chr03	irgsp1_rep	CDS	1226881	1227315	.	+	0	Parent=Os03t0122100-00
Chr03	irgsp1_rep	CDS	1227429	1227803	.	+	0	Parent=Os03t0122100-00
Chr03	irgsp1_rep	CDS	1229446	1229532	.	+	0	Parent=Os03t0122100-00
Chr03	irgsp1_rep	three_prime_UTR	1229533	1229550	.	+	.	Parent=Os03t0122100-00
Chr03	irgsp1_rep	mRNA	1232247	1234438	.	-	.	ID=Os03t0122200-01;Name=Os03t0122200-01;Locus_id=Os03g0122200;Note=Similar to 50S ribosomal protein L11.;Transcript_evidence=AK065033 (DDBJ%2C Best hit);ORF_evidence=B6U1J2 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L11 (IPR000911),Ribosomal protein L11%2C bacterial-type (IPR006519),Ribosomal protein L11%2C C-terminal (IPR020783),Ribosomal protein L11%2C N-terminal (IPR020784),Ribosomal protein L11%2C conserved site (IPR020785);NIAS_FLcDNA=J013001H03;TENOR=Os03t0122200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	1234438	1234438	.	-	.	Parent=Os03t0122200-01
Chr03	irgsp1_rep	CDS	1234206	1234437	.	-	0	Parent=Os03t0122200-01
Chr03	irgsp1_rep	CDS	1233947	1234119	.	-	2	Parent=Os03t0122200-01
Chr03	irgsp1_rep	CDS	1233786	1233849	.	-	0	Parent=Os03t0122200-01
Chr03	irgsp1_rep	CDS	1232552	1232760	.	-	2	Parent=Os03t0122200-01
Chr03	irgsp1_rep	three_prime_UTR	1232247	1232551	.	-	.	Parent=Os03t0122200-01
Chr03	irgsp1_rep	mRNA	1235460	1244932	.	-	.	ID=Os03t0122300-01;Name=Os03t0122300-01;Locus_id=Os03g0122300;RAP-DB Gene Symbol Synonym(s)=OsF3H;RAP-DB Gene Name Synonym(s)=flavanone 3-hydroxylase;Oryzabase Gene Symbol Synonym(s)=FLS%2C 2-ODD2%2C Os2-ODD2%2C 2ODD2%2C Os2ODD2%2C OsF3H%2C F3H;Oryzabase Gene Name Synonym(s)=flavonol synthase%2C 2-oxoglutarate-dependent dioxygenase 2%2C flavanone 3-hydroxylase;Note=Flavanone 3-hydroxylase%2C Positive regulation of flavonoid biosynthesis%2C Resistance to brown planthopper (BPH);Transcript_evidence=AK068438,AK104414;ORF_evidence=Q10SI2;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Isopenicillin N synthase-like (IPR027443),Non-haem dioxygenase N-terminal domain (IPR026992),Oxoglutarate/iron-dependent dioxygenase (IPR005123);NIAS_FLcDNA=J013154K17,006-204-B12;Manual Curation=February 13%2C 2019;Literature_PMID=30734457;Oryzabase=16784;TENOR=Os03t0122300-01
Chr03	irgsp1_rep	five_prime_UTR	1244903	1244932	.	-	.	Parent=Os03t0122300-01
Chr03	irgsp1_rep	CDS	1244708	1244902	.	-	0	Parent=Os03t0122300-01
Chr03	irgsp1_rep	CDS	1244344	1244591	.	-	0	Parent=Os03t0122300-01
Chr03	irgsp1_rep	CDS	1236971	1237295	.	-	1	Parent=Os03t0122300-01
Chr03	irgsp1_rep	CDS	1235685	1235945	.	-	0	Parent=Os03t0122300-01
Chr03	irgsp1_rep	three_prime_UTR	1235460	1235684	.	-	.	Parent=Os03t0122300-01
Chr03	irgsp1_rep	mRNA	1242351	1244930	.	-	.	ID=Os03t0122300-02;Name=Os03t0122300-02;Locus_id=Os03g0122300;Oryzabase Gene Symbol Synonym(s)=FLS%2C 2-ODD2%2C Os2-ODD2%2C 2ODD2%2C Os2ODD2%2C OsF3H%2C F3H;Oryzabase Gene Name Synonym(s)=flavonol synthase%2C 2-oxoglutarate-dependent dioxygenase 2%2C flavanone 3-hydroxylase;Note=Similar to Oxidoreductase%2C 2OG-Fe oxygenase family protein%2C expressed.;Transcript_evidence=AK071416 (DDBJ%2C Best hit);ORF_evidence=Q7G1T5 (UniProt);NIAS_FLcDNA=J023093A18;Oryzabase=16784;Expression=AK071416;TENOR=Os03t0122300-02;KEGG=Os03t0122300-02
Chr03	irgsp1_rep	five_prime_UTR	1244903	1244930	.	-	.	Parent=Os03t0122300-02
Chr03	irgsp1_rep	CDS	1244708	1244902	.	-	0	Parent=Os03t0122300-02
Chr03	irgsp1_rep	CDS	1244344	1244591	.	-	0	Parent=Os03t0122300-02
Chr03	irgsp1_rep	CDS	1242679	1242751	.	-	1	Parent=Os03t0122300-02
Chr03	irgsp1_rep	three_prime_UTR	1242351	1242678	.	-	.	Parent=Os03t0122300-02
Chr03	irgsp1_rep	mRNA	1270230	1271217	.	+	.	ID=Os03t0122500-01;Name=Os03t0122500-01;Locus_id=Os03g0122500;RAP-DB Gene Symbol Synonym(s)=Ef-cd;RAP-DB Gene Name Synonym(s)=Early flowering-completely dominant;CGSNL Gene Symbol=EF-CD;CGSNL Gene Name=EARLY FLOWERING-COMPLETELY DOMINANT;Oryzabase Gene Symbol Synonym(s)=Ef-cd;Oryzabase Gene Name Synonym(s)=Early flowering-completely dominant;Note=Long noncoding RNA (lncRNA)%2C Shortening of maturity duration with no yield penalty;Transcript_evidence=AK242050;ORF_evidence=NONE;NIAS_FLcDNA=J075122G05;Manual Curation=September 18%2C 2019;Literature_PMID=31451662;Oryzabase=23300;TENOR=Os03t0122500-01
Chr03	irgsp1_rep	exon	1270230	1270457	.	+	.	Parent=Os03t0122500-01
Chr03	irgsp1_rep	exon	1270541	1270788	.	+	.	Parent=Os03t0122500-01
Chr03	irgsp1_rep	exon	1270983	1271217	.	+	.	Parent=Os03t0122500-01
Chr03	irgsp1_rep	mRNA	1270328	1300273	.	-	.	ID=Os03t0122600-01;Name=Os03t0122600-01;Locus_id=Os03g0122600;RAP-DB Gene Symbol Synonym(s)=OsMADS50%2C OsSOC1%2C AGL20;RAP-DB Gene Name Synonym(s)=MADS-box transcription factor 50%2C Protein SUPPRESSOR OF CONSTANS OVEREXPRESSION 1-like%2C Protein AGAMOUS-like 20;CGSNL Gene Symbol=MADS50;CGSNL Gene Name=MADS BOX GENE 50;Oryzabase Gene Symbol Synonym(s)=OsMADS50%2C AGL20%2C SOC1%2C OsSOC1%2C RMADS208%2C OsSOC1/ OsMADS50/DTH3%2C DTH3%2C OsDTH3;Oryzabase Gene Name Synonym(s)=MADS box gene50%2C MADS-box transcription factor 50%2C Protein SUPPRESSOR OF CONSTANS OVEREXPRESSION 1-like%2C Protein AGAMOUS-like 20;Note=MIKC-type MADS-box protein%2C Flowering activator%2C Short-day/long-day promotion of flowering;Transcript_evidence=AK067641,AB003328;ORF_evidence=Q9XJ60;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein dimerization activity (GO:0046983),Cellular Component: nucleus (GO:0005634);InterPro=Transcription factor%2C MADS-box (IPR002100),Transcription factor%2C K-box (IPR002487);NIAS_FLcDNA=J013108C22;Manual Curation=July 6%2C 2017;Literature_PMID=15144377,10382970;Oryzabase=3103;Expression=AK067641;TENOR=Os03t0122600-01;KEGG=Os03t0122600-01
Chr03	irgsp1_rep	five_prime_UTR	1300137	1300273	.	-	.	Parent=Os03t0122600-01
Chr03	irgsp1_rep	five_prime_UTR	1299957	1300000	.	-	.	Parent=Os03t0122600-01
Chr03	irgsp1_rep	CDS	1299775	1299956	.	-	0	Parent=Os03t0122600-01
Chr03	irgsp1_rep	CDS	1272065	1272143	.	-	1	Parent=Os03t0122600-01
Chr03	irgsp1_rep	CDS	1271442	1271503	.	-	0	Parent=Os03t0122600-01
Chr03	irgsp1_rep	CDS	1271252	1271351	.	-	1	Parent=Os03t0122600-01
Chr03	irgsp1_rep	CDS	1271111	1271152	.	-	0	Parent=Os03t0122600-01
Chr03	irgsp1_rep	CDS	1270950	1270991	.	-	0	Parent=Os03t0122600-01
Chr03	irgsp1_rep	CDS	1270568	1270753	.	-	0	Parent=Os03t0122600-01
Chr03	irgsp1_rep	three_prime_UTR	1270328	1270567	.	-	.	Parent=Os03t0122600-01
Chr03	irgsp1_rep	mRNA	1270320	1300025	.	-	.	ID=Os03t0122600-02;Name=Os03t0122600-02;Locus_id=Os03g0122600;CGSNL Gene Symbol=MADS50;CGSNL Gene Name=MADS BOX GENE 50;Oryzabase Gene Symbol Synonym(s)=OsMADS50%2C AGL20%2C SOC1%2C OsSOC1%2C RMADS208%2C OsSOC1/ OsMADS50/DTH3%2C DTH3%2C OsDTH3;Oryzabase Gene Name Synonym(s)=MADS box gene50%2C MADS-box transcription factor 50%2C Protein SUPPRESSOR OF CONSTANS OVEREXPRESSION 1-like%2C Protein AGAMOUS-like 20;Note=Transcription factor%2C MADS-box domain containing protein.;Transcript_evidence=AK104921 (DDBJ%2C Best hit);ORF_evidence=Q9XJ60 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box (IPR002100),Transcription factor%2C K-box (IPR002487);NIAS_FLcDNA=001-047-H02;Oryzabase=3103;TENOR=Os03t0122600-02;KEGG=Os03t0122600-02
Chr03	irgsp1_rep	five_prime_UTR	1299957	1300025	.	-	.	Parent=Os03t0122600-02
Chr03	irgsp1_rep	CDS	1299775	1299956	.	-	0	Parent=Os03t0122600-02
Chr03	irgsp1_rep	CDS	1272065	1272143	.	-	1	Parent=Os03t0122600-02
Chr03	irgsp1_rep	CDS	1271442	1271503	.	-	0	Parent=Os03t0122600-02
Chr03	irgsp1_rep	CDS	1271252	1271351	.	-	1	Parent=Os03t0122600-02
Chr03	irgsp1_rep	CDS	1271111	1271152	.	-	0	Parent=Os03t0122600-02
Chr03	irgsp1_rep	CDS	1270950	1270991	.	-	0	Parent=Os03t0122600-02
Chr03	irgsp1_rep	CDS	1270568	1270753	.	-	0	Parent=Os03t0122600-02
Chr03	irgsp1_rep	three_prime_UTR	1270320	1270567	.	-	.	Parent=Os03t0122600-02
Chr03	irgsp1_rep	mRNA	1318429	1320822	.	-	.	ID=Os03t0122850-00;Name=Os03t0122850-00;Locus_id=Os03g0122850;Note=Similar to Ubiquitin conjugating enzyme (Fragment).;Transcript_evidence=U49913 (DDBJ);ORF_evidence=Q41762 (UniProt);TENOR=Os03t0122850-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	1320785	1320822	.	-	.	Parent=Os03t0122850-00
Chr03	irgsp1_rep	CDS	1320670	1320784	.	-	0	Parent=Os03t0122850-00
Chr03	irgsp1_rep	CDS	1318429	1318580	.	-	2	Parent=Os03t0122850-00
Chr03	irgsp1_rep	mRNA	1318268	1321639	.	+	.	ID=Os03t0123100-01;Name=Os03t0123100-01;Locus_id=Os03g0123100;RAP-DB Gene Symbol Synonym(s)=OsSCE2;RAP-DB Gene Name Synonym(s)=SUMO-conjugating enzyme 2;Oryzabase Gene Symbol Synonym(s)=OsSce2%2C Sce2%2C OsUBC2%2C UBC2%2C OsSCE1a%2C SCE1a%2C OsSCE1a.1%2C OsSCE1a.2;Oryzabase Gene Name Synonym(s)=SUMO-conjugating enzyme 2%2C Ubiquitin-conjugating enzyme 2%2C E2 SUMO conjugation enzyme 1a%2C SUMO conjugation enzyme 1a%2C E2 protein SCE1a;Note=SUMO conjugating enzyme;Transcript_evidence=AK062161,AK102397;ORF_evidence=Q8H8G9;InterPro=Ubiquitin-conjugating enzyme/RWD-like (IPR016135),Ubiquitin-conjugating enzyme E2 (IPR000608),Ubiquitin-conjugating enzyme%2C active site (IPR023313);NIAS_FLcDNA=001-046-B02,J033092H08;Manual Curation=June 20%2C 2019;Literature_PMID=31212102;Oryzabase=13203;TENOR=Os03t0123100-01;Subcellular location=nucleus (GO:0005634)
Chr03	irgsp1_rep	five_prime_UTR	1318268	1318318	.	+	.	Parent=Os03t0123100-01
Chr03	irgsp1_rep	CDS	1318319	1318387	.	+	0	Parent=Os03t0123100-01
Chr03	irgsp1_rep	CDS	1318498	1318581	.	+	0	Parent=Os03t0123100-01
Chr03	irgsp1_rep	CDS	1320671	1320823	.	+	0	Parent=Os03t0123100-01
Chr03	irgsp1_rep	CDS	1320906	1321019	.	+	0	Parent=Os03t0123100-01
Chr03	irgsp1_rep	CDS	1321131	1321193	.	+	0	Parent=Os03t0123100-01
Chr03	irgsp1_rep	three_prime_UTR	1321194	1321639	.	+	.	Parent=Os03t0123100-01
Chr03	irgsp1_rep	mRNA	1322549	1324314	.	+	.	ID=Os03t0123200-01;Name=Os03t0123200-01;Locus_id=Os03g0123200;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK066740 (DDBJ%2C Best hit);ORF_evidence=NP_001151236.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013082B19;Expression=AK066740;TENOR=Os03t0123200-01;KEGG=Os03t0123200-01
Chr03	irgsp1_rep	five_prime_UTR	1322549	1322682	.	+	.	Parent=Os03t0123200-01
Chr03	irgsp1_rep	CDS	1322683	1323048	.	+	0	Parent=Os03t0123200-01
Chr03	irgsp1_rep	CDS	1323635	1323681	.	+	0	Parent=Os03t0123200-01
Chr03	irgsp1_rep	CDS	1323772	1324117	.	+	1	Parent=Os03t0123200-01
Chr03	irgsp1_rep	three_prime_UTR	1324118	1324314	.	+	.	Parent=Os03t0123200-01
Chr03	irgsp1_rep	mRNA	1327450	1331022	.	+	.	ID=Os03t0123300-01;Name=Os03t0123300-01;Locus_id=Os03g0123300;RAP-DB Gene Symbol Synonym(s)=OsCCS52A%2C TAD1%2C TE;RAP-DB Gene Name Synonym(s)=TILLERING AND DWARF 1%2C Tillering and Dwarf 1%2C cell cycle switch 52 A%2C tiller enhancer;CGSNL Gene Symbol=TAD1;CGSNL Gene Name=TILLERING AND DWARF 1;Oryzabase Gene Symbol Synonym(s)=TAD1%2C OsCCS52A%2C TE%2C OsWD40-61%2C TAD1/TE%2C CCS52A1;Oryzabase Gene Name Synonym(s)=Tillering and Dwarf 1%2C cell cycle switch 52 A%2C cell cycle switch 52A%2C A-type cell cycle switch 52%2C tiller enhancer%2C HOMOLOGUE OF CDH1%2C CELL CYCLE SWITCH PROTEIN 52A 1;Note=Activator of the anaphase promoting complex/cyclosome (APC/C) complex%2C Regulation of cell cycle%2C Regulation of postembryonic shoot branching and tillering%2C Maintenance of endoreduplication during endosperm development;Transcript_evidence=AK070642;ORF_evidence=Q10SH0;GO=Biological Process: positive regulation of ubiquitin protein ligase activity (GO:1904668),Molecular Function: protein binding (GO:0005515),Molecular Function: anaphase-promoting complex binding (GO:0010997),Molecular Function: ubiquitin-protein transferase activator activity (GO:0097027);InterPro=The WD repeat Cdc20/Fizzy family (IPR033010),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),Anaphase-promoting complex subunit 4%2C WD40 domain (IPR024977),WD40 repeat (IPR001680),WD40 repeat%2C conserved site (IPR019775);NIAS_FLcDNA=J023060I01;Manual Curation=May 12%2C 2017;Literature_PMID=22434195,22434193,21927949;Oryzabase=9825;Expression=AK070642;TENOR=Os03t0123300-01;KEGG=Os03t0123300-01;Subcellular location=nucleus (GO:0005634)
Chr03	irgsp1_rep	five_prime_UTR	1327450	1327474	.	+	.	Parent=Os03t0123300-01
Chr03	irgsp1_rep	CDS	1327475	1328086	.	+	0	Parent=Os03t0123300-01
Chr03	irgsp1_rep	CDS	1328296	1328418	.	+	0	Parent=Os03t0123300-01
Chr03	irgsp1_rep	CDS	1328499	1328603	.	+	0	Parent=Os03t0123300-01
Chr03	irgsp1_rep	CDS	1329005	1329184	.	+	0	Parent=Os03t0123300-01
Chr03	irgsp1_rep	CDS	1329305	1329367	.	+	0	Parent=Os03t0123300-01
Chr03	irgsp1_rep	CDS	1329468	1329662	.	+	0	Parent=Os03t0123300-01
Chr03	irgsp1_rep	CDS	1330021	1330122	.	+	0	Parent=Os03t0123300-01
Chr03	irgsp1_rep	CDS	1330202	1330264	.	+	0	Parent=Os03t0123300-01
Chr03	irgsp1_rep	CDS	1330362	1330430	.	+	0	Parent=Os03t0123300-01
Chr03	irgsp1_rep	CDS	1330532	1330591	.	+	0	Parent=Os03t0123300-01
Chr03	irgsp1_rep	three_prime_UTR	1330592	1331022	.	+	.	Parent=Os03t0123300-01
Chr03	irgsp1_rep	mRNA	1327843	1331022	.	+	.	ID=Os03t0123300-02;Name=Os03t0123300-02;Locus_id=Os03g0123300;CGSNL Gene Symbol=TAD1;CGSNL Gene Name=TILLERING AND DWARF 1;Oryzabase Gene Symbol Synonym(s)=TAD1%2C OsCCS52A%2C TE%2C OsWD40-61%2C TAD1/TE%2C CCS52A1;Oryzabase Gene Name Synonym(s)=Tillering and Dwarf 1%2C cell cycle switch 52 A%2C cell cycle switch 52A%2C A-type cell cycle switch 52%2C tiller enhancer%2C HOMOLOGUE OF CDH1%2C CELL CYCLE SWITCH PROTEIN 52A 1;Note=Similar to Cell cycle switch protein CCS52A.;Transcript_evidence=AK058595 (DDBJ%2C Best hit);ORF_evidence=Q4TU48 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=001-017-H02;Oryzabase=9825;Expression=AK058595;TENOR=Os03t0123300-02;KEGG=Os03t0123300-02
Chr03	irgsp1_rep	five_prime_UTR	1327843	1327843	.	+	.	Parent=Os03t0123300-02
Chr03	irgsp1_rep	CDS	1327844	1328086	.	+	0	Parent=Os03t0123300-02
Chr03	irgsp1_rep	CDS	1328296	1328418	.	+	0	Parent=Os03t0123300-02
Chr03	irgsp1_rep	CDS	1328499	1328603	.	+	0	Parent=Os03t0123300-02
Chr03	irgsp1_rep	CDS	1329005	1329184	.	+	0	Parent=Os03t0123300-02
Chr03	irgsp1_rep	CDS	1329305	1329367	.	+	0	Parent=Os03t0123300-02
Chr03	irgsp1_rep	CDS	1329468	1329662	.	+	0	Parent=Os03t0123300-02
Chr03	irgsp1_rep	CDS	1330021	1330122	.	+	0	Parent=Os03t0123300-02
Chr03	irgsp1_rep	CDS	1330202	1330264	.	+	0	Parent=Os03t0123300-02
Chr03	irgsp1_rep	CDS	1330362	1330430	.	+	0	Parent=Os03t0123300-02
Chr03	irgsp1_rep	CDS	1330532	1330591	.	+	0	Parent=Os03t0123300-02
Chr03	irgsp1_rep	three_prime_UTR	1330592	1331022	.	+	.	Parent=Os03t0123300-02
Chr03	irgsp1_rep	mRNA	1340067	1345240	.	+	.	ID=Os03t0123500-01;Name=Os03t0123500-01;Locus_id=Os03g0123500;CGSNL Gene Symbol=KNAT7;CGSNL Gene Name=KNOTTED ARABIDOPSIS THALIANA 7;Oryzabase Gene Symbol Synonym(s)=HOS66%2C HB365%2C OsKNAT7;Oryzabase Gene Name Synonym(s)=HOMEOBOX ORYZA SATIVA 66%2C Homeobox protein knotted-1-like 3%2C Homeobox protein HOS66%2C KNOTTED ARABIDOPSIS THALIANA7%2C KNOX ARABIDOPSIS THALIANA7;Note=Similar to HOS66 protein.;Transcript_evidence=AK060316 (DDBJ%2C Best hit);ORF_evidence=Q94LW3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),ELK (IPR005539),KNOX1 (IPR005540),KNOX2 (IPR005541),Homeobox KN domain (IPR008422),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);NIAS_FLcDNA=001-007-E04;Oryzabase=8708;Expression=AK060316;TENOR=Os03t0123500-01;KEGG=Os03t0123500-01
Chr03	irgsp1_rep	five_prime_UTR	1340067	1340259	.	+	.	Parent=Os03t0123500-01
Chr03	irgsp1_rep	CDS	1340260	1340316	.	+	0	Parent=Os03t0123500-01
Chr03	irgsp1_rep	CDS	1340384	1340605	.	+	0	Parent=Os03t0123500-01
Chr03	irgsp1_rep	CDS	1340805	1340925	.	+	0	Parent=Os03t0123500-01
Chr03	irgsp1_rep	CDS	1343581	1343774	.	+	2	Parent=Os03t0123500-01
Chr03	irgsp1_rep	CDS	1344311	1344442	.	+	0	Parent=Os03t0123500-01
Chr03	irgsp1_rep	CDS	1344692	1344825	.	+	0	Parent=Os03t0123500-01
Chr03	irgsp1_rep	CDS	1344935	1344938	.	+	1	Parent=Os03t0123500-01
Chr03	irgsp1_rep	three_prime_UTR	1344939	1345240	.	+	.	Parent=Os03t0123500-01
Chr03	irgsp1_rep	mRNA	1340068	1345165	.	+	.	ID=Os03t0123500-02;Name=Os03t0123500-02;Locus_id=Os03g0123500;RAP-DB Gene Symbol Synonym(s)=KNAT7%2C HOS66%2C HOS66L;RAP-DB Gene Name Synonym(s)=KNOTTED ARABIDOPSIS THALIANA7;CGSNL Gene Symbol=KNAT7;CGSNL Gene Name=KNOTTED ARABIDOPSIS THALIANA 7;Oryzabase Gene Symbol Synonym(s)=HOS66%2C HB365%2C OsKNAT7;Oryzabase Gene Name Synonym(s)=HOMEOBOX ORYZA SATIVA 66%2C Homeobox protein knotted-1-like 3%2C Homeobox protein HOS66%2C KNOTTED ARABIDOPSIS THALIANA7%2C KNOX ARABIDOPSIS THALIANA7;Note=Class II KNOX-like homeobox protein%2C Regulation of cell expansion and wall thickening;Transcript_evidence=AK120888;ORF_evidence=Q94LW3;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Cellular Component: nucleus (GO:0005634);InterPro=Homeobox-like domain superfamily (IPR009057),KNOX1 (IPR005540),KNOX2 (IPR005541),ELK domain (IPR005539),Homeobox domain (IPR001356),Homeobox KN domain (IPR008422);NIAS_FLcDNA=J023029D13;Manual Curation=July 31%2C 2019;Literature_PMID=31358682,12034492;Oryzabase=8708;Expression=AK120888;TENOR=Os03t0123500-02;Subcellular location=nucleus (GO:0005634)
Chr03	irgsp1_rep	five_prime_UTR	1340068	1340245	.	+	.	Parent=Os03t0123500-02
Chr03	irgsp1_rep	CDS	1340246	1340605	.	+	0	Parent=Os03t0123500-02
Chr03	irgsp1_rep	CDS	1340805	1340925	.	+	0	Parent=Os03t0123500-02
Chr03	irgsp1_rep	CDS	1343581	1343774	.	+	2	Parent=Os03t0123500-02
Chr03	irgsp1_rep	CDS	1344311	1344442	.	+	0	Parent=Os03t0123500-02
Chr03	irgsp1_rep	CDS	1344692	1344825	.	+	0	Parent=Os03t0123500-02
Chr03	irgsp1_rep	CDS	1344935	1344938	.	+	1	Parent=Os03t0123500-02
Chr03	irgsp1_rep	three_prime_UTR	1344939	1345165	.	+	.	Parent=Os03t0123500-02
Chr03	irgsp1_rep	mRNA	1346049	1349514	.	-	.	ID=Os03t0123600-01;Name=Os03t0123600-01;Locus_id=Os03g0123600;Note=Protein of unknown function Cys-rich family protein.;Transcript_evidence=AK105012 (DDBJ%2C Best hit);ORF_evidence=NP_974084.1 (RefSeq);InterPro=Uncharacterised protein family Cys-rich (IPR006461);NIAS_FLcDNA=001-008-B02;Expression=AK105012;TENOR=Os03t0123600-01;KEGG=Os03t0123600-01
Chr03	irgsp1_rep	five_prime_UTR	1349389	1349514	.	-	.	Parent=Os03t0123600-01
Chr03	irgsp1_rep	CDS	1349286	1349388	.	-	0	Parent=Os03t0123600-01
Chr03	irgsp1_rep	CDS	1349151	1349172	.	-	2	Parent=Os03t0123600-01
Chr03	irgsp1_rep	CDS	1347977	1348033	.	-	1	Parent=Os03t0123600-01
Chr03	irgsp1_rep	CDS	1347799	1347880	.	-	1	Parent=Os03t0123600-01
Chr03	irgsp1_rep	CDS	1347073	1347168	.	-	0	Parent=Os03t0123600-01
Chr03	irgsp1_rep	CDS	1346840	1346964	.	-	0	Parent=Os03t0123600-01
Chr03	irgsp1_rep	CDS	1346727	1346745	.	-	1	Parent=Os03t0123600-01
Chr03	irgsp1_rep	CDS	1346319	1346639	.	-	0	Parent=Os03t0123600-01
Chr03	irgsp1_rep	three_prime_UTR	1346049	1346318	.	-	.	Parent=Os03t0123600-01
Chr03	irgsp1_rep	mRNA	1346126	1349480	.	-	.	ID=Os03t0123600-02;Name=Os03t0123600-02;Locus_id=Os03g0123600;Note=Protein of unknown function Cys-rich family protein.;Transcript_evidence=AK109354 (DDBJ%2C Best hit),AK101248 (DDBJ%2C Best hit);ORF_evidence=NP_974084.1 (RefSeq);InterPro=Uncharacterised protein family Cys-rich (IPR006461);NIAS_FLcDNA=006-205-F08,J033032D06;Expression=AK109354;TENOR=Os03t0123600-02;KEGG=Os03t0123600-02
Chr03	irgsp1_rep	five_prime_UTR	1349389	1349480	.	-	.	Parent=Os03t0123600-02
Chr03	irgsp1_rep	CDS	1349286	1349388	.	-	0	Parent=Os03t0123600-02
Chr03	irgsp1_rep	CDS	1349151	1349172	.	-	2	Parent=Os03t0123600-02
Chr03	irgsp1_rep	CDS	1347977	1348033	.	-	1	Parent=Os03t0123600-02
Chr03	irgsp1_rep	CDS	1347799	1347880	.	-	1	Parent=Os03t0123600-02
Chr03	irgsp1_rep	CDS	1347073	1347168	.	-	0	Parent=Os03t0123600-02
Chr03	irgsp1_rep	CDS	1346840	1346964	.	-	0	Parent=Os03t0123600-02
Chr03	irgsp1_rep	CDS	1346727	1346745	.	-	1	Parent=Os03t0123600-02
Chr03	irgsp1_rep	CDS	1346319	1346639	.	-	0	Parent=Os03t0123600-02
Chr03	irgsp1_rep	three_prime_UTR	1346126	1346318	.	-	.	Parent=Os03t0123600-02
Chr03	irgsp1_rep	mRNA	1355516	1358037	.	+	.	ID=Os03t0123800-01;Name=Os03t0123800-01;Locus_id=Os03g0123800;Note=Similar to Hydrolase.;Transcript_evidence=AK061176 (DDBJ%2C Best hit),AK069496 (DDBJ%2C Best hit);ORF_evidence=B6TXT9 (UniProt);NIAS_FLcDNA=006-209-C05,J023025C19;Expression=AK061176;TENOR=Os03t0123800-01;KEGG=Os03t0123800-01
Chr03	irgsp1_rep	five_prime_UTR	1355516	1355760	.	+	.	Parent=Os03t0123800-01
Chr03	irgsp1_rep	CDS	1355761	1356064	.	+	0	Parent=Os03t0123800-01
Chr03	irgsp1_rep	CDS	1356207	1356484	.	+	2	Parent=Os03t0123800-01
Chr03	irgsp1_rep	CDS	1357757	1357813	.	+	0	Parent=Os03t0123800-01
Chr03	irgsp1_rep	three_prime_UTR	1357814	1358037	.	+	.	Parent=Os03t0123800-01
Chr03	irgsp1_rep	mRNA	1394429	1400133	.	+	.	ID=Os03t0124000-01;Name=Os03t0124000-01;Locus_id=Os03g0124000;Note=Homeodomain-related domain containing protein.;Transcript_evidence=AK121207 (DDBJ%2C Best hit);ORF_evidence=B6SZ15 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),POX (IPR006563),Homeobox KN domain (IPR008422),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);NIAS_FLcDNA=J023088C15;Expression=AK121207;TENOR=Os03t0124000-01;KEGG=Os03t0124000-01
Chr03	irgsp1_rep	five_prime_UTR	1394429	1394763	.	+	.	Parent=Os03t0124000-01
Chr03	irgsp1_rep	five_prime_UTR	1394862	1394894	.	+	.	Parent=Os03t0124000-01
Chr03	irgsp1_rep	CDS	1394895	1395560	.	+	0	Parent=Os03t0124000-01
Chr03	irgsp1_rep	CDS	1396212	1396594	.	+	0	Parent=Os03t0124000-01
Chr03	irgsp1_rep	CDS	1398264	1398324	.	+	1	Parent=Os03t0124000-01
Chr03	irgsp1_rep	CDS	1399038	1399703	.	+	0	Parent=Os03t0124000-01
Chr03	irgsp1_rep	three_prime_UTR	1399704	1400133	.	+	.	Parent=Os03t0124000-01
Chr03	irgsp1_rep	mRNA	1396209	1399528	.	-	.	ID=Os03t0124033-00;Name=Os03t0124033-00;Locus_id=Os03g0124033;Note=Hypothetical protein.;Transcript_evidence=tplb0025a22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0124033-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	1399490	1399528	.	-	.	Parent=Os03t0124033-00
Chr03	irgsp1_rep	CDS	1398980	1399489	.	-	0	Parent=Os03t0124033-00
Chr03	irgsp1_rep	CDS	1396209	1396601	.	-	0	Parent=Os03t0124033-00
Chr03	irgsp1_rep	mRNA	1402828	1404996	.	+	.	ID=Os03t0124100-01;Name=Os03t0124100-01;Locus_id=Os03g0124100;Oryzabase Gene Symbol Synonym(s)=OsSTA87;Note=Protein of unknown function DUF604 domain containing protein.;Transcript_evidence=AK107007 (DDBJ%2C Best hit);ORF_evidence=Q01KI0 (UniProt);InterPro=Protein of unknown function DUF604 (IPR006740);NIAS_FLcDNA=002-120-E03;Oryzabase=19384;Expression=AK107007;TENOR=Os03t0124100-01;KEGG=Os03t0124100-01
Chr03	irgsp1_rep	five_prime_UTR	1402828	1402847	.	+	.	Parent=Os03t0124100-01
Chr03	irgsp1_rep	CDS	1402848	1404248	.	+	0	Parent=Os03t0124100-01
Chr03	irgsp1_rep	CDS	1404345	1404455	.	+	0	Parent=Os03t0124100-01
Chr03	irgsp1_rep	CDS	1404548	1404556	.	+	0	Parent=Os03t0124100-01
Chr03	irgsp1_rep	three_prime_UTR	1404557	1404996	.	+	.	Parent=Os03t0124100-01
Chr03	irgsp1_rep	mRNA	1406065	1408788	.	+	.	ID=Os03t0124200-01;Name=Os03t0124200-01;Locus_id=Os03g0124200;Oryzabase Gene Symbol Synonym(s)=OsCrRLK1L6;Oryzabase Gene Name Synonym(s)=Catharanthus roseus receptor-like kinase1-like kinase 6;Note=Similar to Pto-like protein kinase F.;Transcript_evidence=AK102524 (DDBJ%2C Best hit);ORF_evidence=A2XBX8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Malectin-like carbohydrate-binding domain (IPR024788);NIAS_FLcDNA=J033096A14;Oryzabase=18675;Expression=AK102524;TENOR=Os03t0124200-01;KEGG=Os03t0124200-01
Chr03	irgsp1_rep	five_prime_UTR	1406065	1406129	.	+	.	Parent=Os03t0124200-01
Chr03	irgsp1_rep	CDS	1406130	1408676	.	+	0	Parent=Os03t0124200-01
Chr03	irgsp1_rep	three_prime_UTR	1408677	1408788	.	+	.	Parent=Os03t0124200-01
Chr03	irgsp1_rep	mRNA	1406513	1408803	.	+	.	ID=Os03t0124200-02;Name=Os03t0124200-02;Locus_id=Os03g0124200;Oryzabase Gene Symbol Synonym(s)=OsCrRLK1L6;Oryzabase Gene Name Synonym(s)=Catharanthus roseus receptor-like kinase1-like kinase 6;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=AK105735 (DDBJ%2C Best hit);ORF_evidence=A2XBX8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635),Malectin-like carbohydrate-binding domain (IPR024788);NIAS_FLcDNA=001-201-H11;Oryzabase=18675;Expression=AK105735;TENOR=Os03t0124200-02;KEGG=Os03t0124200-02
Chr03	irgsp1_rep	five_prime_UTR	1406513	1406513	.	+	.	Parent=Os03t0124200-02
Chr03	irgsp1_rep	CDS	1406514	1408676	.	+	0	Parent=Os03t0124200-02
Chr03	irgsp1_rep	three_prime_UTR	1408677	1408803	.	+	.	Parent=Os03t0124200-02
Chr03	irgsp1_rep	mRNA	1410020	1411612	.	+	.	ID=Os03t0124300-01;Name=Os03t0124300-01;Locus_id=Os03g0124300;Note=Similar to ATP binding protein.;Transcript_evidence=AK106076 (DDBJ%2C Best hit);ORF_evidence=B6TWY5 (UniProt);InterPro=Malectin-like carbohydrate-binding domain (IPR024788);NIAS_FLcDNA=001-207-A01;TENOR=Os03t0124300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	1410020	1410075	.	+	.	Parent=Os03t0124300-01
Chr03	irgsp1_rep	CDS	1410076	1411476	.	+	0	Parent=Os03t0124300-01
Chr03	irgsp1_rep	three_prime_UTR	1411477	1411612	.	+	.	Parent=Os03t0124300-01
Chr03	irgsp1_rep	mRNA	1410063	1411723	.	+	.	ID=Os03t0124300-02;Name=Os03t0124300-02;Locus_id=Os03g0124300;Note=Similar to ATP binding protein.;Transcript_evidence=AK069148 (DDBJ%2C Best hit);ORF_evidence=B6TWY5 (UniProt);InterPro=Malectin-like carbohydrate-binding domain (IPR024788);NIAS_FLcDNA=J023003G19;Expression=AK069148;TENOR=Os03t0124300-02;KEGG=Os03t0124300-02
Chr03	irgsp1_rep	five_prime_UTR	1410063	1410075	.	+	.	Parent=Os03t0124300-02
Chr03	irgsp1_rep	CDS	1410076	1410263	.	+	0	Parent=Os03t0124300-02
Chr03	irgsp1_rep	CDS	1410387	1411476	.	+	1	Parent=Os03t0124300-02
Chr03	irgsp1_rep	three_prime_UTR	1411477	1411723	.	+	.	Parent=Os03t0124300-02
Chr03	irgsp1_rep	mRNA	1419786	1420939	.	+	.	ID=Os03t0124500-01;Name=Os03t0124500-01;Locus_id=Os03g0124500;Note=Conserved hypothetical protein.;Transcript_evidence=AK119960 (DDBJ%2C Best hit);ORF_evidence=B8ALZ1 (UniProt);NIAS_FLcDNA=002-184-D03;Expression=AK119960;TENOR=Os03t0124500-01;KEGG=Os03t0124500-01
Chr03	irgsp1_rep	five_prime_UTR	1419786	1419868	.	+	.	Parent=Os03t0124500-01
Chr03	irgsp1_rep	CDS	1419869	1420597	.	+	0	Parent=Os03t0124500-01
Chr03	irgsp1_rep	CDS	1420717	1420731	.	+	0	Parent=Os03t0124500-01
Chr03	irgsp1_rep	three_prime_UTR	1420732	1420939	.	+	.	Parent=Os03t0124500-01
Chr03	irgsp1_rep	mRNA	1427658	1428168	.	+	.	ID=Os03t0124800-01;Name=Os03t0124800-01;Locus_id=Os03g0124800;Note=Non-protein coding transcript.;Transcript_evidence=AK121064 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023059C18;TENOR=Os03t0124800-01
Chr03	irgsp1_rep	exon	1427658	1428168	.	+	.	Parent=Os03t0124800-01
Chr03	irgsp1_rep	mRNA	1430583	1433728	.	+	.	ID=Os03t0124900-01;Name=Os03t0124900-01;Locus_id=Os03g0124900;Oryzabase Gene Symbol Synonym(s)=OsPGL29%2C PGL29;Oryzabase Gene Name Synonym(s)=Polygalacturonases-Like 29%2C PG-like 29;Note=Pectin lyase fold/virulence factor domain containing protein.;Transcript_evidence=AK070284 (DDBJ%2C Best hit);ORF_evidence=NP_001151102.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=J023048L01;Oryzabase=22306;Expression=AK070284;TENOR=Os03t0124900-01;KEGG=Os03t0124900-01
Chr03	irgsp1_rep	five_prime_UTR	1430583	1430638	.	+	.	Parent=Os03t0124900-01
Chr03	irgsp1_rep	CDS	1430639	1430662	.	+	0	Parent=Os03t0124900-01
Chr03	irgsp1_rep	CDS	1430775	1431077	.	+	0	Parent=Os03t0124900-01
Chr03	irgsp1_rep	CDS	1432231	1432351	.	+	0	Parent=Os03t0124900-01
Chr03	irgsp1_rep	CDS	1432464	1432638	.	+	2	Parent=Os03t0124900-01
Chr03	irgsp1_rep	CDS	1432734	1432804	.	+	1	Parent=Os03t0124900-01
Chr03	irgsp1_rep	CDS	1432903	1433585	.	+	2	Parent=Os03t0124900-01
Chr03	irgsp1_rep	three_prime_UTR	1433586	1433728	.	+	.	Parent=Os03t0124900-01
Chr03	irgsp1_rep	mRNA	1433749	1435315	.	-	.	ID=Os03t0125000-01;Name=Os03t0125000-01;Locus_id=Os03g0125000;Oryzabase Gene Name Synonym(s)=Chloroplast 50S ribosomal protein;Note=Similar to 50S ribosomal protein L5%2C chloroplast.;Transcript_evidence=AK070779 (DDBJ%2C Best hit);ORF_evidence=Q9ZST0 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L5 (IPR002132),Ribosomal protein L5%2C conserved site (IPR020929),Ribosomal protein L5 domain (IPR022803);NIAS_FLcDNA=J023072F09;Oryzabase=9616;TENOR=Os03t0125000-01
Chr03	irgsp1_rep	five_prime_UTR	1435280	1435315	.	-	.	Parent=Os03t0125000-01
Chr03	irgsp1_rep	CDS	1434977	1435279	.	-	0	Parent=Os03t0125000-01
Chr03	irgsp1_rep	CDS	1434643	1434843	.	-	0	Parent=Os03t0125000-01
Chr03	irgsp1_rep	CDS	1433916	1434251	.	-	0	Parent=Os03t0125000-01
Chr03	irgsp1_rep	three_prime_UTR	1433749	1433915	.	-	.	Parent=Os03t0125000-01
Chr03	irgsp1_rep	mRNA	1433760	1435293	.	-	.	ID=Os03t0125000-02;Name=Os03t0125000-02;Locus_id=Os03g0125000;Oryzabase Gene Name Synonym(s)=Chloroplast 50S ribosomal protein;Note=Similar to 50S ribosomal protein L5%2C chloroplast.;Transcript_evidence=AK098999 (DDBJ%2C Best hit),AK059557 (DDBJ%2C Best hit),AK104137 (DDBJ%2C Best hit);ORF_evidence=Q9ZST0 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L5 (IPR002132),Ribosomal protein L5%2C conserved site (IPR020929),Ribosomal protein L5 domain (IPR022803);NIAS_FLcDNA=J013099N22,001-029-G09,006-204-H07;Oryzabase=9616;TENOR=Os03t0125000-02
Chr03	irgsp1_rep	five_prime_UTR	1435280	1435293	.	-	.	Parent=Os03t0125000-02
Chr03	irgsp1_rep	CDS	1434977	1435279	.	-	0	Parent=Os03t0125000-02
Chr03	irgsp1_rep	CDS	1434643	1434843	.	-	0	Parent=Os03t0125000-02
Chr03	irgsp1_rep	CDS	1433916	1434251	.	-	0	Parent=Os03t0125000-02
Chr03	irgsp1_rep	three_prime_UTR	1433760	1433915	.	-	.	Parent=Os03t0125000-02
Chr03	irgsp1_rep	mRNA	1436356	1439055	.	-	.	ID=Os03t0125100-01;Name=Os03t0125100-01;Locus_id=Os03g0125100;RAP-DB Gene Symbol Synonym(s)=DSM2%2C OsBCH1%2C OsHYD3;RAP-DB Gene Name Synonym(s)=beta-Carotene Hydroxylase 1%2C carotene beta-ring hydroxylase 3;Oryzabase Gene Symbol Synonym(s)=DSM2%2C OsDSM2%2C OsBCH1%2C BCH1%2C OsHYD3;Oryzabase Gene Name Synonym(s)=beta-Carotene Hydroxylase 1%2C carotene beta-ring hydroxylase 3;Note=Beta-carotene hydroxylase%2C Drought and oxidative stress resistance;Transcript_evidence=AK287823 (Genbank);ORF_evidence=Q10SE7 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Fatty acid hydroxylase (IPR006694);NIAS_FLcDNA=J065184D15;Manual Curation=November 24%2C 2010;Literature_PMID=20852032,19767386;Oryzabase=18457;TENOR=Os03t0125100-01;KEGG=Os03t0125100-01
Chr03	irgsp1_rep	five_prime_UTR	1439032	1439055	.	-	.	Parent=Os03t0125100-01
Chr03	irgsp1_rep	CDS	1438717	1439031	.	-	0	Parent=Os03t0125100-01
Chr03	irgsp1_rep	CDS	1438552	1438614	.	-	0	Parent=Os03t0125100-01
Chr03	irgsp1_rep	CDS	1438261	1438467	.	-	0	Parent=Os03t0125100-01
Chr03	irgsp1_rep	CDS	1437202	1437327	.	-	0	Parent=Os03t0125100-01
Chr03	irgsp1_rep	CDS	1437022	1437078	.	-	0	Parent=Os03t0125100-01
Chr03	irgsp1_rep	CDS	1436633	1436722	.	-	0	Parent=Os03t0125100-01
Chr03	irgsp1_rep	three_prime_UTR	1436356	1436632	.	-	.	Parent=Os03t0125100-01
Chr03	irgsp1_rep	mRNA	1444996	1448651	.	+	.	ID=Os03t0125300-01;Name=Os03t0125300-01;Locus_id=Os03g0125300;Note=D111/G-patch domain containing protein.;Transcript_evidence=AK121790 (DDBJ%2C Best hit),AK065004 (DDBJ%2C Best hit);ORF_evidence=B6TBI8 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676);InterPro=D111/G-patch (IPR000467);NIAS_FLcDNA=J033095A12,J013001E10;TENOR=Os03t0125300-01
Chr03	irgsp1_rep	five_prime_UTR	1444996	1445089	.	+	.	Parent=Os03t0125300-01
Chr03	irgsp1_rep	CDS	1445090	1445167	.	+	0	Parent=Os03t0125300-01
Chr03	irgsp1_rep	CDS	1445624	1445708	.	+	0	Parent=Os03t0125300-01
Chr03	irgsp1_rep	CDS	1445815	1445894	.	+	2	Parent=Os03t0125300-01
Chr03	irgsp1_rep	CDS	1446016	1446040	.	+	0	Parent=Os03t0125300-01
Chr03	irgsp1_rep	CDS	1446119	1446215	.	+	2	Parent=Os03t0125300-01
Chr03	irgsp1_rep	CDS	1446300	1446366	.	+	1	Parent=Os03t0125300-01
Chr03	irgsp1_rep	CDS	1446504	1446594	.	+	0	Parent=Os03t0125300-01
Chr03	irgsp1_rep	CDS	1447029	1447198	.	+	2	Parent=Os03t0125300-01
Chr03	irgsp1_rep	CDS	1447468	1447755	.	+	0	Parent=Os03t0125300-01
Chr03	irgsp1_rep	CDS	1447844	1447960	.	+	0	Parent=Os03t0125300-01
Chr03	irgsp1_rep	CDS	1448241	1448297	.	+	0	Parent=Os03t0125300-01
Chr03	irgsp1_rep	three_prime_UTR	1448298	1448651	.	+	.	Parent=Os03t0125300-01
Chr03	irgsp1_rep	mRNA	1449071	1451951	.	+	.	ID=Os03t0125400-01;Name=Os03t0125400-01;Locus_id=Os03g0125400;Note=Similar to D-erythro-sphingosine kinase/ diacylglycerol kinase.;Transcript_evidence=AK101342 (DDBJ%2C Best hit);ORF_evidence=B6TDW8 (UniProt);GO=Biological Process: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway (GO:0007205),Molecular Function: diacylglycerol kinase activity (GO:0004143);InterPro=Diacylglycerol kinase%2C catalytic domain (IPR001206),Diacylglycerol/lipid kinase (IPR005218);NIAS_FLcDNA=J033034J23;Expression=AK101342;TENOR=Os03t0125400-01;KEGG=Os03t0125400-01
Chr03	irgsp1_rep	five_prime_UTR	1449071	1449121	.	+	.	Parent=Os03t0125400-01
Chr03	irgsp1_rep	CDS	1449122	1449281	.	+	0	Parent=Os03t0125400-01
Chr03	irgsp1_rep	CDS	1449359	1449435	.	+	2	Parent=Os03t0125400-01
Chr03	irgsp1_rep	CDS	1449586	1449639	.	+	0	Parent=Os03t0125400-01
Chr03	irgsp1_rep	CDS	1449734	1449793	.	+	0	Parent=Os03t0125400-01
Chr03	irgsp1_rep	CDS	1449898	1449975	.	+	0	Parent=Os03t0125400-01
Chr03	irgsp1_rep	CDS	1450122	1450168	.	+	0	Parent=Os03t0125400-01
Chr03	irgsp1_rep	CDS	1450250	1450290	.	+	1	Parent=Os03t0125400-01
Chr03	irgsp1_rep	CDS	1450597	1450681	.	+	2	Parent=Os03t0125400-01
Chr03	irgsp1_rep	CDS	1450760	1450874	.	+	1	Parent=Os03t0125400-01
Chr03	irgsp1_rep	CDS	1450979	1451101	.	+	0	Parent=Os03t0125400-01
Chr03	irgsp1_rep	CDS	1451186	1451286	.	+	0	Parent=Os03t0125400-01
Chr03	irgsp1_rep	CDS	1451663	1451792	.	+	1	Parent=Os03t0125400-01
Chr03	irgsp1_rep	three_prime_UTR	1451793	1451951	.	+	.	Parent=Os03t0125400-01
Chr03	irgsp1_rep	mRNA	1457515	1461362	.	+	.	ID=Os03t0125600-01;Name=Os03t0125600-01;Locus_id=Os03g0125600;Note=Ser Thr specific protein kinase-like protein.;Transcript_evidence=AK243600 (DDBJ%2C Best hit);ORF_evidence=Q10SE3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J100084O08;TENOR=Os03t0125600-01;KEGG=Os03t0125600-01
Chr03	irgsp1_rep	five_prime_UTR	1457515	1457579	.	+	.	Parent=Os03t0125600-01
Chr03	irgsp1_rep	CDS	1457580	1458334	.	+	0	Parent=Os03t0125600-01
Chr03	irgsp1_rep	CDS	1459071	1459175	.	+	1	Parent=Os03t0125600-01
Chr03	irgsp1_rep	CDS	1459267	1459389	.	+	1	Parent=Os03t0125600-01
Chr03	irgsp1_rep	CDS	1460225	1460395	.	+	1	Parent=Os03t0125600-01
Chr03	irgsp1_rep	CDS	1460480	1460609	.	+	1	Parent=Os03t0125600-01
Chr03	irgsp1_rep	CDS	1460689	1460898	.	+	0	Parent=Os03t0125600-01
Chr03	irgsp1_rep	CDS	1460992	1461090	.	+	0	Parent=Os03t0125600-01
Chr03	irgsp1_rep	three_prime_UTR	1461091	1461362	.	+	.	Parent=Os03t0125600-01
Chr03	irgsp1_rep	mRNA	1462415	1466140	.	+	.	ID=Os03t0125650-01;Name=Os03t0125650-01;Locus_id=Os03g0125650;Note=Hypothetical gene.;Transcript_evidence=AK289045 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090092H03;TENOR=Os03t0125650-01;KEGG=Os03t0125650-01
Chr03	irgsp1_rep	five_prime_UTR	1462415	1463649	.	+	.	Parent=Os03t0125650-01
Chr03	irgsp1_rep	CDS	1463650	1463964	.	+	0	Parent=Os03t0125650-01
Chr03	irgsp1_rep	three_prime_UTR	1463965	1466140	.	+	.	Parent=Os03t0125650-01
Chr03	irgsp1_rep	mRNA	1463556	1466921	.	-	.	ID=Os03t0125700-01;Name=Os03t0125700-01;Locus_id=Os03g0125700;Note=Ubiquitin ligase%2C Det1/DDB1-complexing domain containing protein.;Transcript_evidence=AK062913 (DDBJ%2C Best hit);ORF_evidence=B8ALZ5 (UniProt);InterPro=Ubiquitin ligase%2C Det1/DDB1-complexing (IPR018276);NIAS_FLcDNA=001-108-G11;Expression=AK062913;TENOR=Os03t0125700-01;KEGG=Os03t0125700-01
Chr03	irgsp1_rep	five_prime_UTR	1466847	1466921	.	-	.	Parent=Os03t0125700-01
Chr03	irgsp1_rep	CDS	1466760	1466846	.	-	0	Parent=Os03t0125700-01
Chr03	irgsp1_rep	CDS	1466128	1466185	.	-	0	Parent=Os03t0125700-01
Chr03	irgsp1_rep	CDS	1464029	1464090	.	-	2	Parent=Os03t0125700-01
Chr03	irgsp1_rep	CDS	1463825	1463941	.	-	0	Parent=Os03t0125700-01
Chr03	irgsp1_rep	three_prime_UTR	1463556	1463824	.	-	.	Parent=Os03t0125700-01
Chr03	irgsp1_rep	mRNA	1476335	1483349	.	+	.	ID=Os03t0125800-01;Name=Os03t0125800-01;Locus_id=Os03g0125800;Oryzabase Gene Symbol Synonym(s)=OsCBSDUF3%2C OsSTA88;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSDUF3%2C CBS domain containing protein OsCBSDUF3;Note=Cystathionine beta-synthase%2C core domain containing protein.;Transcript_evidence=AK102496 (DDBJ%2C Best hit),AK100164 (DDBJ%2C Best hit);ORF_evidence=B6SVJ7 (UniProt);InterPro=Domain of unknown function DUF21 (IPR002550);NIAS_FLcDNA=J033095A20,J023021E03;Oryzabase=10344;Expression=AK102496;TENOR=Os03t0125800-01;KEGG=Os03t0125800-01
Chr03	irgsp1_rep	five_prime_UTR	1476335	1476498	.	+	.	Parent=Os03t0125800-01
Chr03	irgsp1_rep	CDS	1476499	1476676	.	+	0	Parent=Os03t0125800-01
Chr03	irgsp1_rep	CDS	1476761	1476837	.	+	2	Parent=Os03t0125800-01
Chr03	irgsp1_rep	CDS	1476926	1477009	.	+	0	Parent=Os03t0125800-01
Chr03	irgsp1_rep	CDS	1477100	1477213	.	+	0	Parent=Os03t0125800-01
Chr03	irgsp1_rep	CDS	1477897	1477983	.	+	0	Parent=Os03t0125800-01
Chr03	irgsp1_rep	CDS	1478357	1478496	.	+	0	Parent=Os03t0125800-01
Chr03	irgsp1_rep	CDS	1478570	1478657	.	+	1	Parent=Os03t0125800-01
Chr03	irgsp1_rep	CDS	1479442	1479515	.	+	0	Parent=Os03t0125800-01
Chr03	irgsp1_rep	CDS	1481464	1481657	.	+	1	Parent=Os03t0125800-01
Chr03	irgsp1_rep	CDS	1481747	1481949	.	+	2	Parent=Os03t0125800-01
Chr03	irgsp1_rep	CDS	1482272	1482318	.	+	0	Parent=Os03t0125800-01
Chr03	irgsp1_rep	CDS	1482401	1482653	.	+	1	Parent=Os03t0125800-01
Chr03	irgsp1_rep	CDS	1482868	1482885	.	+	0	Parent=Os03t0125800-01
Chr03	irgsp1_rep	three_prime_UTR	1482886	1483349	.	+	.	Parent=Os03t0125800-01
Chr03	irgsp1_rep	mRNA	1484212	1485927	.	+	.	ID=Os03t0125900-01;Name=Os03t0125900-01;Locus_id=Os03g0125900;Note=Conserved hypothetical protein.;Transcript_evidence=AK060370 (DDBJ%2C Best hit);ORF_evidence=A2XBY9 (UniProt);NIAS_FLcDNA=001-009-B02;Expression=AK060370;TENOR=Os03t0125900-01;KEGG=Os03t0125900-01
Chr03	irgsp1_rep	five_prime_UTR	1484212	1484398	.	+	.	Parent=Os03t0125900-01
Chr03	irgsp1_rep	CDS	1484399	1484943	.	+	0	Parent=Os03t0125900-01
Chr03	irgsp1_rep	CDS	1485644	1485797	.	+	1	Parent=Os03t0125900-01
Chr03	irgsp1_rep	three_prime_UTR	1485798	1485927	.	+	.	Parent=Os03t0125900-01
Chr03	irgsp1_rep	mRNA	1484367	1486097	.	+	.	ID=Os03t0125900-02;Name=Os03t0125900-02;Locus_id=Os03g0125900;Note=Hypothetical conserved gene.;Transcript_evidence=AK071921 (DDBJ%2C Best hit);ORF_evidence=Q10SD7 (UniProt);NIAS_FLcDNA=J013072E05;Expression=AK071921;TENOR=Os03t0125900-02;KEGG=Os03t0125900-02
Chr03	irgsp1_rep	five_prime_UTR	1484367	1484398	.	+	.	Parent=Os03t0125900-02
Chr03	irgsp1_rep	CDS	1484399	1484947	.	+	0	Parent=Os03t0125900-02
Chr03	irgsp1_rep	three_prime_UTR	1484948	1486097	.	+	.	Parent=Os03t0125900-02
Chr03	irgsp1_rep	mRNA	1486030	1490594	.	-	.	ID=Os03t0126000-01;Name=Os03t0126000-01;Locus_id=Os03g0126000;Oryzabase Gene Name Synonym(s)=Rice binding protein%2C C-terminal binding protein;Note=Similar to Phosphorybosyl anthranilate transferase 1.;Transcript_evidence=AK121680 (DDBJ%2C Best hit);ORF_evidence=NP_001130955.1 (RefSeq);GO=Biological Process: tryptophan biosynthetic process (GO:0000162),Biological Process: metabolic process (GO:0008152),Molecular Function: anthranilate phosphoribosyltransferase activity (GO:0004048),Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 3 (IPR000312),Anthranilate phosphoribosyl transferase (IPR005940),Glycosyl transferase%2C family 3%2C N-terminal (IPR017459),Glycosyl transferase%2C family 3%2C subgroup%2C N-terminal (IPR020072);NIAS_FLcDNA=J033069P19;Oryzabase=21000;Expression=AK121680;TENOR=Os03t0126000-01;KEGG=Os03t0126000-01 (EC:2.4.2.18)
Chr03	irgsp1_rep	five_prime_UTR	1490565	1490594	.	-	.	Parent=Os03t0126000-01
Chr03	irgsp1_rep	CDS	1490370	1490564	.	-	0	Parent=Os03t0126000-01
Chr03	irgsp1_rep	CDS	1490107	1490250	.	-	0	Parent=Os03t0126000-01
Chr03	irgsp1_rep	CDS	1489857	1490018	.	-	0	Parent=Os03t0126000-01
Chr03	irgsp1_rep	CDS	1489627	1489710	.	-	0	Parent=Os03t0126000-01
Chr03	irgsp1_rep	CDS	1488084	1488272	.	-	0	Parent=Os03t0126000-01
Chr03	irgsp1_rep	CDS	1487523	1487613	.	-	0	Parent=Os03t0126000-01
Chr03	irgsp1_rep	CDS	1487322	1487381	.	-	2	Parent=Os03t0126000-01
Chr03	irgsp1_rep	CDS	1486976	1487094	.	-	2	Parent=Os03t0126000-01
Chr03	irgsp1_rep	CDS	1486514	1486648	.	-	0	Parent=Os03t0126000-01
Chr03	irgsp1_rep	CDS	1486414	1486422	.	-	0	Parent=Os03t0126000-01
Chr03	irgsp1_rep	three_prime_UTR	1486030	1486413	.	-	.	Parent=Os03t0126000-01
Chr03	irgsp1_rep	mRNA	1494308	1497245	.	-	.	ID=Os03t0126100-01;Name=Os03t0126100-01;Locus_id=Os03g0126100;Note=Similar to Arabidopsis thaliana DNA%2C 40 kb surrounding ACS1 locus.;Transcript_evidence=AK111921 (DDBJ%2C Best hit);ORF_evidence=NP_001151564.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: cofactor binding (GO:0048037);InterPro=D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding (IPR006140),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-013-A10;Expression=AK111921;TENOR=Os03t0126100-01;KEGG=Os03t0126100-01
Chr03	irgsp1_rep	CDS	1497086	1497245	.	-	0	Parent=Os03t0126100-01
Chr03	irgsp1_rep	CDS	1496833	1496963	.	-	2	Parent=Os03t0126100-01
Chr03	irgsp1_rep	CDS	1495630	1496418	.	-	0	Parent=Os03t0126100-01
Chr03	irgsp1_rep	CDS	1495466	1495513	.	-	0	Parent=Os03t0126100-01
Chr03	irgsp1_rep	CDS	1494828	1494944	.	-	0	Parent=Os03t0126100-01
Chr03	irgsp1_rep	CDS	1494519	1494593	.	-	0	Parent=Os03t0126100-01
Chr03	irgsp1_rep	three_prime_UTR	1494308	1494518	.	-	.	Parent=Os03t0126100-01
Chr03	irgsp1_rep	mRNA	1500447	1504235	.	-	.	ID=Os03t0126300-01;Name=Os03t0126300-01;Locus_id=Os03g0126300;Note=Similar to cDNA clone:001-042-G03%2C full insert sequence.;Transcript_evidence=AK061256 (DDBJ%2C Best hit);ORF_evidence=Q6V9S3 (UniProt);NIAS_FLcDNA=006-212-B03;Expression=AK061256;TENOR=Os03t0126300-01;KEGG=Os03t0126300-01
Chr03	irgsp1_rep	five_prime_UTR	1504213	1504235	.	-	.	Parent=Os03t0126300-01
Chr03	irgsp1_rep	CDS	1503969	1504212	.	-	0	Parent=Os03t0126300-01
Chr03	irgsp1_rep	CDS	1503745	1503773	.	-	2	Parent=Os03t0126300-01
Chr03	irgsp1_rep	CDS	1502900	1502959	.	-	0	Parent=Os03t0126300-01
Chr03	irgsp1_rep	CDS	1502506	1502583	.	-	0	Parent=Os03t0126300-01
Chr03	irgsp1_rep	CDS	1502122	1502251	.	-	0	Parent=Os03t0126300-01
Chr03	irgsp1_rep	CDS	1501604	1501656	.	-	2	Parent=Os03t0126300-01
Chr03	irgsp1_rep	CDS	1500836	1501000	.	-	0	Parent=Os03t0126300-01
Chr03	irgsp1_rep	CDS	1500491	1500637	.	-	0	Parent=Os03t0126300-01
Chr03	irgsp1_rep	three_prime_UTR	1500447	1500490	.	-	.	Parent=Os03t0126300-01
Chr03	irgsp1_rep	mRNA	1499868	1504235	.	-	.	ID=Os03t0126300-02;Name=Os03t0126300-02;Locus_id=Os03g0126300;Note=Similar to cDNA clone:001-042-G03%2C full insert sequence.;Transcript_evidence=AK066493 (DDBJ%2C Best hit);ORF_evidence=Q6V9S3 (UniProt);NIAS_FLcDNA=J013071C12;Expression=AK066493;TENOR=Os03t0126300-02;KEGG=Os03t0126300-02
Chr03	irgsp1_rep	five_prime_UTR	1504213	1504235	.	-	.	Parent=Os03t0126300-02
Chr03	irgsp1_rep	CDS	1503963	1504212	.	-	0	Parent=Os03t0126300-02
Chr03	irgsp1_rep	CDS	1503745	1503797	.	-	2	Parent=Os03t0126300-02
Chr03	irgsp1_rep	CDS	1502900	1502959	.	-	0	Parent=Os03t0126300-02
Chr03	irgsp1_rep	CDS	1502506	1502583	.	-	0	Parent=Os03t0126300-02
Chr03	irgsp1_rep	CDS	1502122	1502251	.	-	0	Parent=Os03t0126300-02
Chr03	irgsp1_rep	CDS	1501604	1501656	.	-	2	Parent=Os03t0126300-02
Chr03	irgsp1_rep	CDS	1500836	1501000	.	-	0	Parent=Os03t0126300-02
Chr03	irgsp1_rep	CDS	1500491	1500637	.	-	0	Parent=Os03t0126300-02
Chr03	irgsp1_rep	three_prime_UTR	1500407	1500490	.	-	.	Parent=Os03t0126300-02
Chr03	irgsp1_rep	three_prime_UTR	1499868	1500265	.	-	.	Parent=Os03t0126300-02
Chr03	irgsp1_rep	mRNA	1499972	1504232	.	-	.	ID=Os03t0126300-03;Name=Os03t0126300-03;Locus_id=Os03g0126300;Note=Similar to RPE1 protein.;Transcript_evidence=AK061961 (DDBJ%2C Best hit);ORF_evidence=Q6V9S3 (UniProt);NIAS_FLcDNA=001-042-G03;Expression=AK061961;TENOR=Os03t0126300-03;KEGG=Os03t0126300-03
Chr03	irgsp1_rep	five_prime_UTR	1504213	1504232	.	-	.	Parent=Os03t0126300-03
Chr03	irgsp1_rep	CDS	1503891	1504212	.	-	0	Parent=Os03t0126300-03
Chr03	irgsp1_rep	CDS	1503745	1503797	.	-	2	Parent=Os03t0126300-03
Chr03	irgsp1_rep	CDS	1502900	1502959	.	-	0	Parent=Os03t0126300-03
Chr03	irgsp1_rep	CDS	1502506	1502583	.	-	0	Parent=Os03t0126300-03
Chr03	irgsp1_rep	CDS	1502122	1502251	.	-	0	Parent=Os03t0126300-03
Chr03	irgsp1_rep	CDS	1501604	1501656	.	-	2	Parent=Os03t0126300-03
Chr03	irgsp1_rep	CDS	1500836	1501000	.	-	0	Parent=Os03t0126300-03
Chr03	irgsp1_rep	CDS	1500491	1500637	.	-	0	Parent=Os03t0126300-03
Chr03	irgsp1_rep	three_prime_UTR	1500407	1500490	.	-	.	Parent=Os03t0126300-03
Chr03	irgsp1_rep	three_prime_UTR	1499972	1500265	.	-	.	Parent=Os03t0126300-03
Chr03	irgsp1_rep	mRNA	1499619	1502121	.	-	.	ID=Os03t0126300-04;Name=Os03t0126300-04;Locus_id=Os03g0126300;Note=Similar to cDNA clone:001-042-G03%2C full insert sequence.;Transcript_evidence=AK100841 (DDBJ%2C Best hit);ORF_evidence=Q10SD2 (UniProt);NIAS_FLcDNA=J023123F06;Expression=AK100841;TENOR=Os03t0126300-04;KEGG=Os03t0126300-04
Chr03	irgsp1_rep	five_prime_UTR	1501151	1502121	.	-	.	Parent=Os03t0126300-04
Chr03	irgsp1_rep	CDS	1500836	1501150	.	-	0	Parent=Os03t0126300-04
Chr03	irgsp1_rep	CDS	1500491	1500637	.	-	0	Parent=Os03t0126300-04
Chr03	irgsp1_rep	three_prime_UTR	1500407	1500490	.	-	.	Parent=Os03t0126300-04
Chr03	irgsp1_rep	three_prime_UTR	1499619	1500265	.	-	.	Parent=Os03t0126300-04
Chr03	irgsp1_rep	mRNA	1505340	1508525	.	-	.	ID=Os03t0126450-00;Name=Os03t0126450-00;Locus_id=Os03g0126450;Oryzabase Gene Symbol Synonym(s)=OsOFP21%2C OsOFP10;Oryzabase Gene Name Synonym(s)=OVATE family protein 21%2C ovate family protein 10%2C OVATE-domain containing protein 10;Note=Domain of unknown function DUF623 domain containing protein.;Transcript_evidence=EU952385 (DDBJ);ORF_evidence=Q8S5W2 (UniProt);InterPro=Domain of unknown function DUF623 (IPR006458);Oryzabase=18317;TENOR=Os03t0126450-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	1508184	1508525	.	-	0	Parent=Os03t0126450-00
Chr03	irgsp1_rep	CDS	1505340	1506011	.	-	0	Parent=Os03t0126450-00
Chr03	irgsp1_rep	mRNA	1508138	1509664	.	+	.	ID=Os03t0126600-01;Name=Os03t0126600-01;Locus_id=Os03g0126600;Note=Conserved hypothetical protein.;Transcript_evidence=AK243575 (DDBJ%2C Best hit);ORF_evidence=Q8S5W1 (UniProt);NIAS_FLcDNA=J100082H15;TENOR=Os03t0126600-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	1508138	1508644	.	+	.	Parent=Os03t0126600-01
Chr03	irgsp1_rep	CDS	1508645	1508890	.	+	0	Parent=Os03t0126600-01
Chr03	irgsp1_rep	CDS	1508987	1509334	.	+	0	Parent=Os03t0126600-01
Chr03	irgsp1_rep	three_prime_UTR	1509335	1509664	.	+	.	Parent=Os03t0126600-01
Chr03	irgsp1_rep	mRNA	1511322	1512573	.	+	.	ID=Os03t0126700-01;Name=Os03t0126700-01;Locus_id=Os03g0126700;Note=Similar to Barley stem rust resistance protein.;Transcript_evidence=AK099929 (DDBJ%2C Best hit);ORF_evidence=Q2QSQ6 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);NIAS_FLcDNA=J013118L13;Oryzabase=23038;Expression=AK099929;TENOR=Os03t0126700-01;KEGG=Os03t0126700-01
Chr03	irgsp1_rep	five_prime_UTR	1511322	1511519	.	+	.	Parent=Os03t0126700-01
Chr03	irgsp1_rep	CDS	1511520	1511528	.	+	0	Parent=Os03t0126700-01
Chr03	irgsp1_rep	CDS	1511719	1511794	.	+	0	Parent=Os03t0126700-01
Chr03	irgsp1_rep	CDS	1511891	1512393	.	+	2	Parent=Os03t0126700-01
Chr03	irgsp1_rep	three_prime_UTR	1512394	1512573	.	+	.	Parent=Os03t0126700-01
Chr03	irgsp1_rep	mRNA	1514622	1519297	.	-	.	ID=Os03t0126800-01;Name=Os03t0126800-01;Locus_id=Os03g0126800;RAP-DB Gene Symbol Synonym(s)=CIPK9;RAP-DB Gene Name Synonym(s)=CALCINEURIN B-LIKE INTERACTING PROTEIN KINASE 9%2C CBL-INTERACTING PROTEIN KINASE 9;CGSNL Gene Symbol=CIPK09;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 9;Oryzabase Gene Symbol Synonym(s)=OsCIPK09%2C CIPK9%2C OsCIPK9;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 9;Note=CBL-interacting protein kinase 9 (EC:2.7.11.1)%2C Regulation of ammonium-dependent root growth;Transcript_evidence=Q10SC8 (UniProt);ORF_evidence=Q10SC8;GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),Protein kinase domain (IPR000719),NAF/FISL domain (IPR018451),NAF domain (IPR004041),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);Manual Curation=June 12%2C 2020;Literature_PMID=30715138;Oryzabase=7396;TENOR=Os03t0126800-00;Subcellular location=nucleus (GO:0005634), cytosol (GO:0005829)
Chr03	irgsp1_rep	five_prime_UTR	1518948	1519297	.	-	.	Parent=Os03t0126800-01
Chr03	irgsp1_rep	CDS	1518735	1518947	.	-	0	Parent=Os03t0126800-01
Chr03	irgsp1_rep	CDS	1517944	1518006	.	-	0	Parent=Os03t0126800-01
Chr03	irgsp1_rep	CDS	1517761	1517832	.	-	0	Parent=Os03t0126800-01
Chr03	irgsp1_rep	CDS	1517465	1517572	.	-	0	Parent=Os03t0126800-01
Chr03	irgsp1_rep	CDS	1517293	1517373	.	-	0	Parent=Os03t0126800-01
Chr03	irgsp1_rep	CDS	1517005	1517058	.	-	0	Parent=Os03t0126800-01
Chr03	irgsp1_rep	CDS	1516798	1516923	.	-	0	Parent=Os03t0126800-01
Chr03	irgsp1_rep	CDS	1516622	1516711	.	-	0	Parent=Os03t0126800-01
Chr03	irgsp1_rep	CDS	1516347	1516469	.	-	0	Parent=Os03t0126800-01
Chr03	irgsp1_rep	CDS	1516123	1516233	.	-	0	Parent=Os03t0126800-01
Chr03	irgsp1_rep	CDS	1515769	1515885	.	-	0	Parent=Os03t0126800-01
Chr03	irgsp1_rep	CDS	1515577	1515633	.	-	0	Parent=Os03t0126800-01
Chr03	irgsp1_rep	CDS	1515404	1515478	.	-	0	Parent=Os03t0126800-01
Chr03	irgsp1_rep	CDS	1515185	1515265	.	-	0	Parent=Os03t0126800-01
Chr03	irgsp1_rep	three_prime_UTR	1514622	1515184	.	-	.	Parent=Os03t0126800-01
Chr03	irgsp1_rep	mRNA	1514817	1519042	.	+	.	ID=Os03t0126825-01;Name=Os03t0126825-01;Locus_id=Os03g0126825;Note=Hypothetical gene.;Transcript_evidence=AK242859 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090073L24;TENOR=Os03t0126825-01;KEGG=Os03t0126825-01
Chr03	irgsp1_rep	five_prime_UTR	1514817	1514964	.	+	.	Parent=Os03t0126825-01
Chr03	irgsp1_rep	CDS	1514965	1515324	.	+	0	Parent=Os03t0126825-01
Chr03	irgsp1_rep	three_prime_UTR	1515325	1515478	.	+	.	Parent=Os03t0126825-01
Chr03	irgsp1_rep	three_prime_UTR	1515577	1515633	.	+	.	Parent=Os03t0126825-01
Chr03	irgsp1_rep	three_prime_UTR	1515769	1515885	.	+	.	Parent=Os03t0126825-01
Chr03	irgsp1_rep	three_prime_UTR	1516123	1516469	.	+	.	Parent=Os03t0126825-01
Chr03	irgsp1_rep	three_prime_UTR	1516622	1516923	.	+	.	Parent=Os03t0126825-01
Chr03	irgsp1_rep	three_prime_UTR	1517005	1517572	.	+	.	Parent=Os03t0126825-01
Chr03	irgsp1_rep	three_prime_UTR	1517761	1517832	.	+	.	Parent=Os03t0126825-01
Chr03	irgsp1_rep	three_prime_UTR	1517944	1518006	.	+	.	Parent=Os03t0126825-01
Chr03	irgsp1_rep	three_prime_UTR	1518735	1519042	.	+	.	Parent=Os03t0126825-01
Chr03	irgsp1_rep	mRNA	1522341	1523328	.	+	.	ID=Os03t0126850-01;Name=Os03t0126850-01;Locus_id=Os03g0126850;Note=Conserved hypothetical protein.;Transcript_evidence=AK241174 (DDBJ%2C Best hit);ORF_evidence=NP_001173247.1 (RefSeq);NIAS_FLcDNA=J065118F01;TENOR=Os03t0126850-01;KEGG=Os03t0126850-01
Chr03	irgsp1_rep	five_prime_UTR	1522341	1522458	.	+	.	Parent=Os03t0126850-01
Chr03	irgsp1_rep	five_prime_UTR	1522526	1522576	.	+	.	Parent=Os03t0126850-01
Chr03	irgsp1_rep	CDS	1522577	1523041	.	+	0	Parent=Os03t0126850-01
Chr03	irgsp1_rep	three_prime_UTR	1523042	1523328	.	+	.	Parent=Os03t0126850-01
Chr03	irgsp1_rep	mRNA	1522404	1523048	.	-	.	ID=Os03t0126900-01;Name=Os03t0126900-01;Locus_id=Os03g0126900;Note=Conserved hypothetical protein.;Transcript_evidence=AK109217 (DDBJ%2C Best hit);ORF_evidence=A2XBZ9 (UniProt);NIAS_FLcDNA=002-156-E01;Expression=AK109217;TENOR=Os03t0126900-01;KEGG=Os03t0126900-01
Chr03	irgsp1_rep	five_prime_UTR	1522979	1523048	.	-	.	Parent=Os03t0126900-01
Chr03	irgsp1_rep	CDS	1522619	1522978	.	-	0	Parent=Os03t0126900-01
Chr03	irgsp1_rep	three_prime_UTR	1522404	1522618	.	-	.	Parent=Os03t0126900-01
Chr03	irgsp1_rep	mRNA	1525222	1527076	.	-	.	ID=Os03t0127000-01;Name=Os03t0127000-01;Locus_id=Os03g0127000;Note=Similar to cell growth defect factor 2.;Transcript_evidence=AK068479 (DDBJ%2C Best hit);ORF_evidence=NP_001148819.1 (RefSeq);NIAS_FLcDNA=J013152D10;Expression=AK068479;TENOR=Os03t0127000-01;KEGG=Os03t0127000-01
Chr03	irgsp1_rep	five_prime_UTR	1527036	1527076	.	-	.	Parent=Os03t0127000-01
Chr03	irgsp1_rep	CDS	1526946	1527035	.	-	0	Parent=Os03t0127000-01
Chr03	irgsp1_rep	CDS	1526291	1526470	.	-	0	Parent=Os03t0127000-01
Chr03	irgsp1_rep	three_prime_UTR	1525222	1526290	.	-	.	Parent=Os03t0127000-01
Chr03	irgsp1_rep	mRNA	1527270	1530877	.	+	.	ID=Os03t0127100-01;Name=Os03t0127100-01;Locus_id=Os03g0127100;Note=Hypothetical gene.;Transcript_evidence=AK120780 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023009O12;Expression=AK120780;TENOR=Os03t0127100-01;KEGG=Os03t0127100-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	1527270	1527527	.	+	0	Parent=Os03t0127100-01
Chr03	irgsp1_rep	three_prime_UTR	1527528	1527553	.	+	.	Parent=Os03t0127100-01
Chr03	irgsp1_rep	three_prime_UTR	1530546	1530877	.	+	.	Parent=Os03t0127100-01
Chr03	irgsp1_rep	mRNA	1551291	1554059	.	+	.	ID=Os03t0127500-00;Name=Os03t0127500-00;Locus_id=Os03g0127500;CGSNL Gene Symbol=BZIP25;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 25;Oryzabase Gene Symbol Synonym(s)=OsbZIP25;Oryzabase Gene Name Synonym(s)=bZIP transcription factor 25;Note=bZIP transcription factor%2C bZIP-1 domain containing protein.;Transcript_evidence=EU971509 (DDBJ);ORF_evidence=NP_001151643.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);Oryzabase=10113;TENOR=Os03t0127500-00;KEGG=Os03t0127500-00
Chr03	irgsp1_rep	five_prime_UTR	1551291	1551425	.	+	.	Parent=Os03t0127500-00
Chr03	irgsp1_rep	CDS	1551426	1552267	.	+	0	Parent=Os03t0127500-00
Chr03	irgsp1_rep	CDS	1552420	1552552	.	+	1	Parent=Os03t0127500-00
Chr03	irgsp1_rep	CDS	1552685	1552769	.	+	0	Parent=Os03t0127500-00
Chr03	irgsp1_rep	CDS	1553601	1553821	.	+	2	Parent=Os03t0127500-00
Chr03	irgsp1_rep	three_prime_UTR	1553822	1554059	.	+	.	Parent=Os03t0127500-00
Chr03	irgsp1_rep	mRNA	1554059	1559153	.	-	.	ID=Os03t0127600-01;Name=Os03t0127600-01;Locus_id=Os03g0127600;CGSNL Gene Symbol=DLN74;CGSNL Gene Name=DLN REPRESSOR 74;Oryzabase Gene Symbol Synonym(s)=OsDLN74;Oryzabase Gene Name Synonym(s)=DLN repressor 74%2C DLN motif protein 74;Note=Forkhead-associated domain containing protein.;Transcript_evidence=AK103695 (DDBJ%2C Best hit);ORF_evidence=Q8S5V4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515);InterPro=Forkhead-associated (FHA) domain (IPR000253),TSC-22 / Dip / Bun (IPR000580),SMAD/FHA domain (IPR008984);NIAS_FLcDNA=J033136J18;Oryzabase=23178;Expression=AK103695;TENOR=Os03t0127600-01;KEGG=Os03t0127600-01
Chr03	irgsp1_rep	five_prime_UTR	1559044	1559153	.	-	.	Parent=Os03t0127600-01
Chr03	irgsp1_rep	CDS	1558816	1559043	.	-	0	Parent=Os03t0127600-01
Chr03	irgsp1_rep	CDS	1558469	1558644	.	-	0	Parent=Os03t0127600-01
Chr03	irgsp1_rep	CDS	1558284	1558387	.	-	1	Parent=Os03t0127600-01
Chr03	irgsp1_rep	CDS	1557959	1558042	.	-	2	Parent=Os03t0127600-01
Chr03	irgsp1_rep	CDS	1557754	1557857	.	-	2	Parent=Os03t0127600-01
Chr03	irgsp1_rep	CDS	1557583	1557669	.	-	0	Parent=Os03t0127600-01
Chr03	irgsp1_rep	CDS	1557028	1557230	.	-	0	Parent=Os03t0127600-01
Chr03	irgsp1_rep	CDS	1556293	1556494	.	-	1	Parent=Os03t0127600-01
Chr03	irgsp1_rep	CDS	1556158	1556208	.	-	0	Parent=Os03t0127600-01
Chr03	irgsp1_rep	CDS	1555985	1556083	.	-	0	Parent=Os03t0127600-01
Chr03	irgsp1_rep	CDS	1555816	1555875	.	-	0	Parent=Os03t0127600-01
Chr03	irgsp1_rep	CDS	1555568	1555689	.	-	0	Parent=Os03t0127600-01
Chr03	irgsp1_rep	CDS	1554332	1555466	.	-	1	Parent=Os03t0127600-01
Chr03	irgsp1_rep	three_prime_UTR	1554059	1554331	.	-	.	Parent=Os03t0127600-01
Chr03	irgsp1_rep	mRNA	1554300	1555677	.	+	.	ID=Os03t0127650-00;Name=Os03t0127650-00;Locus_id=Os03g0127650;Note=Non-protein coding transcript.;Transcript_evidence=BT017530 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0127650-00
Chr03	irgsp1_rep	exon	1554300	1555465	.	+	.	Parent=Os03t0127650-00
Chr03	irgsp1_rep	exon	1555567	1555677	.	+	.	Parent=Os03t0127650-00
Chr03	irgsp1_rep	mRNA	1562044	1565124	.	+	.	ID=Os03t0127700-01;Name=Os03t0127700-01;Locus_id=Os03g0127700;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK101081 (DDBJ%2C Best hit);ORF_evidence=Q9LQ11 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033024D13;Expression=AK101081;TENOR=Os03t0127700-01;KEGG=Os03t0127700-01
Chr03	irgsp1_rep	five_prime_UTR	1562044	1562202	.	+	.	Parent=Os03t0127700-01
Chr03	irgsp1_rep	CDS	1562203	1563383	.	+	0	Parent=Os03t0127700-01
Chr03	irgsp1_rep	CDS	1563472	1564966	.	+	1	Parent=Os03t0127700-01
Chr03	irgsp1_rep	three_prime_UTR	1564967	1565124	.	+	.	Parent=Os03t0127700-01
Chr03	irgsp1_rep	mRNA	1562047	1566735	.	+	.	ID=Os03t0127700-02;Name=Os03t0127700-02;Locus_id=Os03g0127700;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK103401 (DDBJ%2C Best hit);ORF_evidence=Q9LQ11 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033128B10;Expression=AK103401;TENOR=Os03t0127700-02;KEGG=Os03t0127700-02
Chr03	irgsp1_rep	five_prime_UTR	1562047	1562202	.	+	.	Parent=Os03t0127700-02
Chr03	irgsp1_rep	CDS	1562203	1563383	.	+	0	Parent=Os03t0127700-02
Chr03	irgsp1_rep	CDS	1563472	1564966	.	+	1	Parent=Os03t0127700-02
Chr03	irgsp1_rep	three_prime_UTR	1564967	1566122	.	+	.	Parent=Os03t0127700-02
Chr03	irgsp1_rep	three_prime_UTR	1566518	1566735	.	+	.	Parent=Os03t0127700-02
Chr03	irgsp1_rep	mRNA	1566296	1566638	.	-	.	ID=Os03t0127800-00;Name=Os03t0127800-00;Locus_id=Os03g0127800;Note=Non-protein coding transcript.;Transcript_evidence=EU947022 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0127800-00
Chr03	irgsp1_rep	exon	1566296	1566638	.	-	.	Parent=Os03t0127800-00
Chr03	irgsp1_rep	mRNA	1567984	1571080	.	-	.	ID=Os03t0127900-01;Name=Os03t0127900-01;Locus_id=Os03g0127900;Note=Cation/H+ exchanger domain containing protein.;Transcript_evidence=AK062977 (DDBJ%2C Best hit);ORF_evidence=NP_001147290.1 (RefSeq);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: solute:hydrogen antiporter activity (GO:0015299);InterPro=Cation/H+ exchanger (IPR006153);NIAS_FLcDNA=001-109-E11;Expression=AK062977;TENOR=Os03t0127900-01;KEGG=Os03t0127900-01
Chr03	irgsp1_rep	five_prime_UTR	1571080	1571080	.	-	.	Parent=Os03t0127900-01
Chr03	irgsp1_rep	CDS	1571020	1571079	.	-	0	Parent=Os03t0127900-01
Chr03	irgsp1_rep	CDS	1570482	1570535	.	-	0	Parent=Os03t0127900-01
Chr03	irgsp1_rep	CDS	1569831	1569926	.	-	0	Parent=Os03t0127900-01
Chr03	irgsp1_rep	CDS	1569382	1569570	.	-	0	Parent=Os03t0127900-01
Chr03	irgsp1_rep	CDS	1569209	1569286	.	-	0	Parent=Os03t0127900-01
Chr03	irgsp1_rep	CDS	1569045	1569089	.	-	0	Parent=Os03t0127900-01
Chr03	irgsp1_rep	CDS	1568866	1568961	.	-	0	Parent=Os03t0127900-01
Chr03	irgsp1_rep	CDS	1568523	1568564	.	-	0	Parent=Os03t0127900-01
Chr03	irgsp1_rep	three_prime_UTR	1567984	1568522	.	-	.	Parent=Os03t0127900-01
Chr03	irgsp1_rep	mRNA	1573763	1575496	.	-	.	ID=Os03t0127950-00;Name=Os03t0127950-00;Locus_id=Os03g0127950;Note=Similar to inner membrane protein ybaL.;Transcript_evidence=CT835134 (DDBJ%2C Best hit);ORF_evidence=NP_001147290.1 (RefSeq);TENOR=Os03t0127950-00
Chr03	irgsp1_rep	CDS	1575052	1575496	.	-	0	Parent=Os03t0127950-00
Chr03	irgsp1_rep	CDS	1574750	1574793	.	-	2	Parent=Os03t0127950-00
Chr03	irgsp1_rep	CDS	1573763	1573794	.	-	0	Parent=Os03t0127950-00
Chr03	irgsp1_rep	mRNA	1579382	1580910	.	+	.	ID=Os03t0128000-01;Name=Os03t0128000-01;Locus_id=Os03g0128000;CGSNL Gene Symbol=FLA2;CGSNL Gene Name=FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsFLA2;Oryzabase Gene Name Synonym(s)=fasciclin-like AGP 2%2C fasciclin-like arabinogalactan protein 2;Note=FAS1 domain domain containing protein.;Transcript_evidence=AK121246 (DDBJ%2C Best hit);ORF_evidence=Q06IA4 (UniProt);InterPro=FAS1 domain (IPR000782);NIAS_FLcDNA=J023099J16;Oryzabase=11337;Expression=AK121246;TENOR=Os03t0128000-01;KEGG=Os03t0128000-01
Chr03	irgsp1_rep	five_prime_UTR	1579382	1579508	.	+	.	Parent=Os03t0128000-01
Chr03	irgsp1_rep	CDS	1579509	1580714	.	+	0	Parent=Os03t0128000-01
Chr03	irgsp1_rep	three_prime_UTR	1580715	1580910	.	+	.	Parent=Os03t0128000-01
Chr03	irgsp1_rep	mRNA	1579386	1580817	.	+	.	ID=Os03t0128000-02;Name=Os03t0128000-02;Locus_id=Os03g0128000;CGSNL Gene Symbol=FLA2;CGSNL Gene Name=FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsFLA2;Oryzabase Gene Name Synonym(s)=fasciclin-like AGP 2%2C fasciclin-like arabinogalactan protein 2;Note=Similar to Fasciclin-like protein FLA2.;Transcript_evidence=AK062278 (DDBJ%2C Best hit);ORF_evidence=Q06IA4 (UniProt);InterPro=FAS1 domain (IPR000782);NIAS_FLcDNA=001-100-C01;Oryzabase=11337;Expression=AK062278;TENOR=Os03t0128000-02;KEGG=Os03t0128000-02
Chr03	irgsp1_rep	five_prime_UTR	1579386	1579508	.	+	.	Parent=Os03t0128000-02
Chr03	irgsp1_rep	CDS	1579509	1579831	.	+	0	Parent=Os03t0128000-02
Chr03	irgsp1_rep	CDS	1580590	1580758	.	+	1	Parent=Os03t0128000-02
Chr03	irgsp1_rep	three_prime_UTR	1580759	1580817	.	+	.	Parent=Os03t0128000-02
Chr03	irgsp1_rep	mRNA	1582250	1585728	.	-	.	ID=Os03t0128100-01;Name=Os03t0128100-01;Locus_id=Os03g0128100;CGSNL Gene Symbol=GSL10;CGSNL Gene Name=BETA-1%2C3-GLUCANASE ACTIVITY 10;Oryzabase Gene Symbol Synonym(s)=OsGSL10;Oryzabase Gene Name Synonym(s)=Oryza sativa callose synthase 10%2C callose synthase 10;Note=Similar to Callose synthase 1 catalytic subunit.;Transcript_evidence=AK062279 (DDBJ%2C Best hit);ORF_evidence=Q8S5U9 (UniProt);GO=Biological Process: 1%2C3-beta-D-glucan biosynthetic process (GO:0006075),Cellular Component: 1%2C3-beta-D-glucan synthase complex (GO:0000148),Cellular Component: membrane (GO:0016020),Molecular Function: 1%2C3-beta-D-glucan synthase activity (GO:0003843);InterPro=Glycosyl transferase%2C family 48 (IPR003440);NIAS_FLcDNA=001-100-C02;Oryzabase=8545;Expression=AK062279;TENOR=Os03t0128100-01;KEGG=Os03t0128100-01 (EC:2.4.1.-)
Chr03	irgsp1_rep	five_prime_UTR	1585728	1585728	.	-	.	Parent=Os03t0128100-01
Chr03	irgsp1_rep	CDS	1585677	1585727	.	-	0	Parent=Os03t0128100-01
Chr03	irgsp1_rep	CDS	1585457	1585572	.	-	0	Parent=Os03t0128100-01
Chr03	irgsp1_rep	CDS	1585254	1585337	.	-	1	Parent=Os03t0128100-01
Chr03	irgsp1_rep	CDS	1584836	1584948	.	-	1	Parent=Os03t0128100-01
Chr03	irgsp1_rep	CDS	1584422	1584651	.	-	2	Parent=Os03t0128100-01
Chr03	irgsp1_rep	CDS	1583425	1584219	.	-	0	Parent=Os03t0128100-01
Chr03	irgsp1_rep	CDS	1583247	1583297	.	-	0	Parent=Os03t0128100-01
Chr03	irgsp1_rep	CDS	1582924	1583109	.	-	0	Parent=Os03t0128100-01
Chr03	irgsp1_rep	CDS	1582587	1582841	.	-	0	Parent=Os03t0128100-01
Chr03	irgsp1_rep	three_prime_UTR	1582250	1582586	.	-	.	Parent=Os03t0128100-01
Chr03	irgsp1_rep	mRNA	1582178	1584900	.	-	.	ID=Os03t0128100-02;Name=Os03t0128100-02;Locus_id=Os03g0128100;CGSNL Gene Symbol=GSL10;CGSNL Gene Name=BETA-1%2C3-GLUCANASE ACTIVITY 10;Oryzabase Gene Symbol Synonym(s)=OsGSL10;Oryzabase Gene Name Synonym(s)=Oryza sativa callose synthase 10%2C callose synthase 10;Note=Similar to 1%2C3-beta-glucan synthase component family protein%2C expressed.;Transcript_evidence=AK105008 (DDBJ%2C Best hit);ORF_evidence=Q8S5U9 (UniProt);GO=Biological Process: 1%2C3-beta-D-glucan biosynthetic process (GO:0006075),Cellular Component: 1%2C3-beta-D-glucan synthase complex (GO:0000148),Cellular Component: membrane (GO:0016020),Molecular Function: 1%2C3-beta-D-glucan synthase activity (GO:0003843);InterPro=Glycosyl transferase%2C family 48 (IPR003440);NIAS_FLcDNA=001-006-G07;Oryzabase=8545;Expression=AK105008;TENOR=Os03t0128100-02;KEGG=Os03t0128100-02 (EC:2.4.1.-)
Chr03	irgsp1_rep	five_prime_UTR	1584900	1584900	.	-	.	Parent=Os03t0128100-02
Chr03	irgsp1_rep	CDS	1584836	1584899	.	-	0	Parent=Os03t0128100-02
Chr03	irgsp1_rep	CDS	1584422	1584651	.	-	2	Parent=Os03t0128100-02
Chr03	irgsp1_rep	CDS	1583425	1584219	.	-	0	Parent=Os03t0128100-02
Chr03	irgsp1_rep	CDS	1583247	1583297	.	-	0	Parent=Os03t0128100-02
Chr03	irgsp1_rep	CDS	1582924	1583109	.	-	0	Parent=Os03t0128100-02
Chr03	irgsp1_rep	CDS	1582587	1582841	.	-	0	Parent=Os03t0128100-02
Chr03	irgsp1_rep	three_prime_UTR	1582178	1582586	.	-	.	Parent=Os03t0128100-02
Chr03	irgsp1_rep	mRNA	1594653	1602046	.	-	.	ID=Os03t0128200-01;Name=Os03t0128200-01;Locus_id=Os03g0128200;CGSNL Gene Symbol=GSL10;CGSNL Gene Name=BETA-1%2C3-GLUCANASE ACTIVITY 10;Oryzabase Gene Symbol Synonym(s)=OsGSL10;Oryzabase Gene Name Synonym(s)=Oryza sativa callose synthase 10%2C callose synthase 10;Note=Similar to predicted protein.;Transcript_evidence=AK243268 (DDBJ%2C Best hit);ORF_evidence=Q9LXT9 (UniProt);InterPro=Protein of unknown function DUF605 (IPR006745),Vacuolar protein sorting-associate Vta1%2C N-terminal (IPR023175);NIAS_FLcDNA=J100049F13;Oryzabase=8545;TENOR=Os03t0128200-01;KEGG=Os03t0128200-01 (EC:2.4.1.-)
Chr03	irgsp1_rep	five_prime_UTR	1601723	1602046	.	-	.	Parent=Os03t0128200-01
Chr03	irgsp1_rep	five_prime_UTR	1601487	1601626	.	-	.	Parent=Os03t0128200-01
Chr03	irgsp1_rep	five_prime_UTR	1601231	1601303	.	-	.	Parent=Os03t0128200-01
Chr03	irgsp1_rep	five_prime_UTR	1601113	1601142	.	-	.	Parent=Os03t0128200-01
Chr03	irgsp1_rep	CDS	1600908	1601112	.	-	0	Parent=Os03t0128200-01
Chr03	irgsp1_rep	CDS	1600335	1600435	.	-	2	Parent=Os03t0128200-01
Chr03	irgsp1_rep	CDS	1599786	1599910	.	-	0	Parent=Os03t0128200-01
Chr03	irgsp1_rep	CDS	1599622	1599715	.	-	1	Parent=Os03t0128200-01
Chr03	irgsp1_rep	CDS	1599379	1599489	.	-	0	Parent=Os03t0128200-01
Chr03	irgsp1_rep	CDS	1599181	1599297	.	-	0	Parent=Os03t0128200-01
Chr03	irgsp1_rep	CDS	1598963	1599055	.	-	0	Parent=Os03t0128200-01
Chr03	irgsp1_rep	CDS	1598715	1598806	.	-	0	Parent=Os03t0128200-01
Chr03	irgsp1_rep	CDS	1597401	1597527	.	-	1	Parent=Os03t0128200-01
Chr03	irgsp1_rep	CDS	1595699	1595836	.	-	0	Parent=Os03t0128200-01
Chr03	irgsp1_rep	CDS	1595534	1595610	.	-	0	Parent=Os03t0128200-01
Chr03	irgsp1_rep	CDS	1595380	1595470	.	-	1	Parent=Os03t0128200-01
Chr03	irgsp1_rep	CDS	1595180	1595293	.	-	0	Parent=Os03t0128200-01
Chr03	irgsp1_rep	CDS	1594888	1595022	.	-	0	Parent=Os03t0128200-01
Chr03	irgsp1_rep	three_prime_UTR	1594653	1594887	.	-	.	Parent=Os03t0128200-01
Chr03	irgsp1_rep	mRNA	1608031	1609003	.	-	.	ID=Os03t0128300-01;Name=Os03t0128300-01;Locus_id=Os03g0128300;Note=Conserved hypothetical protein.;Transcript_evidence=AK064718 (DDBJ%2C Best hit);ORF_evidence=B8AMD0 (UniProt);NIAS_FLcDNA=002-118-E07;Expression=AK064718;TENOR=Os03t0128300-01;KEGG=Os03t0128300-01
Chr03	irgsp1_rep	five_prime_UTR	1608946	1609003	.	-	.	Parent=Os03t0128300-01
Chr03	irgsp1_rep	CDS	1608547	1608945	.	-	0	Parent=Os03t0128300-01
Chr03	irgsp1_rep	CDS	1608377	1608466	.	-	0	Parent=Os03t0128300-01
Chr03	irgsp1_rep	three_prime_UTR	1608031	1608376	.	-	.	Parent=Os03t0128300-01
Chr03	irgsp1_rep	mRNA	1609911	1611603	.	-	.	ID=Os03t0128400-01;Name=Os03t0128400-01;Locus_id=Os03g0128400;Note=Conserved hypothetical protein.;Transcript_evidence=AK063116 (DDBJ%2C Best hit);ORF_evidence=A2XC10 (UniProt);NIAS_FLcDNA=001-111-E01;Expression=AK063116;TENOR=Os03t0128400-01;KEGG=Os03t0128400-01
Chr03	irgsp1_rep	five_prime_UTR	1611584	1611603	.	-	.	Parent=Os03t0128400-01
Chr03	irgsp1_rep	CDS	1611453	1611583	.	-	0	Parent=Os03t0128400-01
Chr03	irgsp1_rep	CDS	1610087	1610342	.	-	1	Parent=Os03t0128400-01
Chr03	irgsp1_rep	three_prime_UTR	1609911	1610086	.	-	.	Parent=Os03t0128400-01
Chr03	irgsp1_rep	mRNA	1612327	1616443	.	-	.	ID=Os03t0128500-01;Name=Os03t0128500-01;Locus_id=Os03g0128500;CGSNL Gene Symbol=POLD2;CGSNL Gene Name=POLYMERASE (DNA DIRECTED)%2C DELTA 2;Oryzabase Gene Symbol Synonym(s)=OsPoldelta2%2C OspolD2;Oryzabase Gene Name Synonym(s)=pol delta small subunit%2C DNA polymerase delta 2%2C OsPol delta small subunit;Note=Similar to DNA polymerase delta small subunit (EC 2.7.7.7).;Transcript_evidence=AK067991 (DDBJ%2C Best hit);ORF_evidence=Q9LRE5 (UniProt);GO=Biological Process: DNA replication (GO:0006260),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed DNA polymerase activity (GO:0003887);InterPro=DNA polymerase alpha/epsilon%2C subunit B (IPR007185);NIAS_FLcDNA=J013124O04;Oryzabase=14517;Expression=AK067991;TENOR=Os03t0128500-01;KEGG=Os03t0128500-01 (EC:2.7.7.7)
Chr03	irgsp1_rep	five_prime_UTR	1616286	1616443	.	-	.	Parent=Os03t0128500-01
Chr03	irgsp1_rep	CDS	1616253	1616285	.	-	0	Parent=Os03t0128500-01
Chr03	irgsp1_rep	CDS	1616044	1616173	.	-	0	Parent=Os03t0128500-01
Chr03	irgsp1_rep	CDS	1615266	1615372	.	-	2	Parent=Os03t0128500-01
Chr03	irgsp1_rep	CDS	1615071	1615194	.	-	0	Parent=Os03t0128500-01
Chr03	irgsp1_rep	CDS	1614831	1614935	.	-	2	Parent=Os03t0128500-01
Chr03	irgsp1_rep	CDS	1614611	1614726	.	-	2	Parent=Os03t0128500-01
Chr03	irgsp1_rep	CDS	1614435	1614518	.	-	0	Parent=Os03t0128500-01
Chr03	irgsp1_rep	CDS	1614283	1614351	.	-	0	Parent=Os03t0128500-01
Chr03	irgsp1_rep	CDS	1614117	1614188	.	-	0	Parent=Os03t0128500-01
Chr03	irgsp1_rep	CDS	1613921	1614012	.	-	0	Parent=Os03t0128500-01
Chr03	irgsp1_rep	CDS	1613717	1613844	.	-	1	Parent=Os03t0128500-01
Chr03	irgsp1_rep	CDS	1613450	1613551	.	-	2	Parent=Os03t0128500-01
Chr03	irgsp1_rep	CDS	1613316	1613383	.	-	2	Parent=Os03t0128500-01
Chr03	irgsp1_rep	CDS	1612862	1612921	.	-	0	Parent=Os03t0128500-01
Chr03	irgsp1_rep	three_prime_UTR	1612327	1612861	.	-	.	Parent=Os03t0128500-01
Chr03	irgsp1_rep	mRNA	1619517	1620294	.	+	.	ID=Os03t0128600-01;Name=Os03t0128600-01;Locus_id=Os03g0128600;Note=Conserved hypothetical protein.;Transcript_evidence=AK242075 (DDBJ%2C Best hit);ORF_evidence=NP_001173249.1 (RefSeq);NIAS_FLcDNA=J075136G10;TENOR=Os03t0128600-01;KEGG=Os03t0128600-01
Chr03	irgsp1_rep	five_prime_UTR	1619517	1619607	.	+	.	Parent=Os03t0128600-01
Chr03	irgsp1_rep	CDS	1619608	1620198	.	+	0	Parent=Os03t0128600-01
Chr03	irgsp1_rep	three_prime_UTR	1620199	1620294	.	+	.	Parent=Os03t0128600-01
Chr03	irgsp1_rep	mRNA	1625098	1629527	.	+	.	ID=Os03t0128700-01;Name=Os03t0128700-01;Locus_id=Os03g0128700;CGSNL Gene Symbol=CDPK7;CGSNL Gene Name=CALCIUM-DEPENDENT PROTEIN KINASE 7;Oryzabase Gene Symbol Synonym(s)=OsCDPK7%2C OsCPK7%2C CDPK1%2C OsCDPK11%2C CDPK12%2C OsCDPK13;Oryzabase Gene Name Synonym(s)=calcium dependent protein kinase;Note=Calcium-dependent protein kinase%2C isoform 11 (EC 2.7.1.-) (CDPK 11).;Transcript_evidence=AK066500 (DDBJ%2C Best hit);ORF_evidence=P53684 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Calcium-binding EF-hand (IPR002048),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),EF-hand-like domain (IPR011992),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013071K04;Oryzabase=3030;Expression=AK066500;TENOR=Os03t0128700-01;KEGG=Os03t0128700-01 (EC:2.7.11.17)
Chr03	irgsp1_rep	five_prime_UTR	1625098	1625732	.	+	.	Parent=Os03t0128700-01
Chr03	irgsp1_rep	five_prime_UTR	1625841	1626021	.	+	.	Parent=Os03t0128700-01
Chr03	irgsp1_rep	CDS	1626022	1626721	.	+	0	Parent=Os03t0128700-01
Chr03	irgsp1_rep	CDS	1627000	1627143	.	+	2	Parent=Os03t0128700-01
Chr03	irgsp1_rep	CDS	1627230	1627382	.	+	2	Parent=Os03t0128700-01
Chr03	irgsp1_rep	CDS	1627555	1627670	.	+	2	Parent=Os03t0128700-01
Chr03	irgsp1_rep	CDS	1628056	1628223	.	+	0	Parent=Os03t0128700-01
Chr03	irgsp1_rep	CDS	1628309	1628533	.	+	0	Parent=Os03t0128700-01
Chr03	irgsp1_rep	CDS	1629030	1629152	.	+	0	Parent=Os03t0128700-01
Chr03	irgsp1_rep	three_prime_UTR	1629153	1629527	.	+	.	Parent=Os03t0128700-01
Chr03	irgsp1_rep	mRNA	1630177	1631745	.	-	.	ID=Os03t0128800-01;Name=Os03t0128800-01;Locus_id=Os03g0128800;Note=Conserved hypothetical protein.;Transcript_evidence=AK066570 (DDBJ%2C Best hit),AK104313 (DDBJ%2C Best hit);ORF_evidence=B8AMD3 (UniProt);NIAS_FLcDNA=J013071G07,001-021-A07;Expression=AK066570;TENOR=Os03t0128800-01;KEGG=Os03t0128800-01
Chr03	irgsp1_rep	five_prime_UTR	1631728	1631745	.	-	.	Parent=Os03t0128800-01
Chr03	irgsp1_rep	CDS	1631520	1631727	.	-	0	Parent=Os03t0128800-01
Chr03	irgsp1_rep	CDS	1630809	1631443	.	-	2	Parent=Os03t0128800-01
Chr03	irgsp1_rep	CDS	1630528	1630738	.	-	0	Parent=Os03t0128800-01
Chr03	irgsp1_rep	CDS	1630322	1630404	.	-	2	Parent=Os03t0128800-01
Chr03	irgsp1_rep	three_prime_UTR	1630177	1630321	.	-	.	Parent=Os03t0128800-01
Chr03	irgsp1_rep	mRNA	1630213	1631721	.	-	.	ID=Os03t0128800-03;Name=Os03t0128800-03;Locus_id=Os03g0128800;Note=Similar to predicted protein.;Transcript_evidence=AK109497 (DDBJ%2C Best hit);ORF_evidence=Q10SA9 (UniProt);NIAS_FLcDNA=001-206-G12;Expression=AK109497;TENOR=Os03t0128800-03;KEGG=Os03t0128800-03
Chr03	irgsp1_rep	CDS	1631520	1631721	.	-	0	Parent=Os03t0128800-03
Chr03	irgsp1_rep	CDS	1630809	1631443	.	-	2	Parent=Os03t0128800-03
Chr03	irgsp1_rep	CDS	1630528	1630738	.	-	0	Parent=Os03t0128800-03
Chr03	irgsp1_rep	CDS	1630322	1630404	.	-	2	Parent=Os03t0128800-03
Chr03	irgsp1_rep	three_prime_UTR	1630213	1630321	.	-	.	Parent=Os03t0128800-03
Chr03	irgsp1_rep	mRNA	1635847	1638066	.	-	.	ID=Os03t0128866-00;Name=Os03t0128866-00;Locus_id=Os03g0128866;Note=Non-protein coding transcript.;Transcript_evidence=tplb0045g05 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os03t0128866-00
Chr03	irgsp1_rep	exon	1637668	1638066	.	-	.	Parent=Os03t0128866-00
Chr03	irgsp1_rep	exon	1637370	1637587	.	-	.	Parent=Os03t0128866-00
Chr03	irgsp1_rep	exon	1635847	1637269	.	-	.	Parent=Os03t0128866-00
Chr03	irgsp1_rep	mRNA	1636616	1638097	.	+	.	ID=Os03t0128932-00;Name=Os03t0128932-00;Locus_id=Os03g0128932;Note=Similar to Major facilitator superfamily protein%2C expressed.;Transcript_evidence=BT009593 (DDBJ);ORF_evidence=Q8H887 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);TENOR=Os03t0128932-00
Chr03	irgsp1_rep	CDS	1636616	1637278	.	+	0	Parent=Os03t0128932-00
Chr03	irgsp1_rep	CDS	1637384	1637571	.	+	0	Parent=Os03t0128932-00
Chr03	irgsp1_rep	CDS	1637650	1638097	.	+	1	Parent=Os03t0128932-00
Chr03	irgsp1_rep	mRNA	1641654	1645028	.	+	.	ID=Os03t0129000-01;Name=Os03t0129000-01;Locus_id=Os03g0129000;Oryzabase Gene Symbol Synonym(s)=PIGF%2C PIG-F%2C OsPIG-F;Oryzabase Gene Name Synonym(s)=phosphatidylinositol-glycan biosynthesis protein class F;Note=GPI biosynthesis protein Pig-F domain containing protein.;Transcript_evidence=AK073895 (DDBJ%2C Best hit);ORF_evidence=Q0PGJ2 (UniProt);GO=Biological Process: GPI anchor biosynthetic process (GO:0006506),Cellular Component: endoplasmic reticulum membrane (GO:0005789),Cellular Component: integral to membrane (GO:0016021);InterPro=GPI biosynthesis protein Pig-F (IPR009580);NIAS_FLcDNA=J033074N24;Oryzabase=15771;Expression=AK073895;TENOR=Os03t0129000-01;KEGG=Os03t0129000-01
Chr03	irgsp1_rep	five_prime_UTR	1641654	1641831	.	+	.	Parent=Os03t0129000-01
Chr03	irgsp1_rep	five_prime_UTR	1642395	1642506	.	+	.	Parent=Os03t0129000-01
Chr03	irgsp1_rep	CDS	1642507	1642650	.	+	0	Parent=Os03t0129000-01
Chr03	irgsp1_rep	CDS	1642747	1642812	.	+	0	Parent=Os03t0129000-01
Chr03	irgsp1_rep	CDS	1642912	1642954	.	+	0	Parent=Os03t0129000-01
Chr03	irgsp1_rep	CDS	1643174	1643228	.	+	2	Parent=Os03t0129000-01
Chr03	irgsp1_rep	CDS	1643418	1643466	.	+	1	Parent=Os03t0129000-01
Chr03	irgsp1_rep	CDS	1643752	1643819	.	+	0	Parent=Os03t0129000-01
Chr03	irgsp1_rep	CDS	1643942	1644059	.	+	1	Parent=Os03t0129000-01
Chr03	irgsp1_rep	CDS	1644661	1644774	.	+	0	Parent=Os03t0129000-01
Chr03	irgsp1_rep	three_prime_UTR	1644775	1645028	.	+	.	Parent=Os03t0129000-01
Chr03	irgsp1_rep	mRNA	1645164	1648764	.	-	.	ID=Os03t0129100-01;Name=Os03t0129100-01;Locus_id=Os03g0129100;CGSNL Gene Symbol=MLO_;CGSNL Gene Name=POWDERY-MILDEW-RESISTANCE GENE O_;Oryzabase Gene Symbol Synonym(s)=OsMLO2%2C OsMLO3%2C OsMlo2%2C MLO2%2C Mlo2%2C Mlo%2C MLO3;Oryzabase Gene Name Synonym(s)=powdery-MiLdew-resistance gene O2%2C powdery-MiLdew-resistance gene O3%2C MLO homologue%2C Mildew resistance Locus O-3;Note=Seven transmembrane protein MLO2.;Transcript_evidence=AK098993 (DDBJ%2C Best hit),AK111990 (DDBJ%2C Best hit);ORF_evidence=Q94EX3 (UniProt);GO=Biological Process: cell death (GO:0008219),Cellular Component: integral to membrane (GO:0016021);InterPro=Mlo-related protein (IPR004326);NIAS_FLcDNA=J013098A12,001-032-H06;Oryzabase=9186;TENOR=Os03t0129100-01
Chr03	irgsp1_rep	five_prime_UTR	1648604	1648764	.	-	.	Parent=Os03t0129100-01
Chr03	irgsp1_rep	CDS	1648481	1648603	.	-	0	Parent=Os03t0129100-01
Chr03	irgsp1_rep	CDS	1648302	1648359	.	-	0	Parent=Os03t0129100-01
Chr03	irgsp1_rep	CDS	1647627	1647868	.	-	2	Parent=Os03t0129100-01
Chr03	irgsp1_rep	CDS	1647409	1647525	.	-	0	Parent=Os03t0129100-01
Chr03	irgsp1_rep	CDS	1647215	1647275	.	-	0	Parent=Os03t0129100-01
Chr03	irgsp1_rep	CDS	1647040	1647125	.	-	2	Parent=Os03t0129100-01
Chr03	irgsp1_rep	CDS	1646853	1646927	.	-	0	Parent=Os03t0129100-01
Chr03	irgsp1_rep	CDS	1646664	1646752	.	-	0	Parent=Os03t0129100-01
Chr03	irgsp1_rep	CDS	1646504	1646553	.	-	1	Parent=Os03t0129100-01
Chr03	irgsp1_rep	CDS	1646373	1646413	.	-	2	Parent=Os03t0129100-01
Chr03	irgsp1_rep	CDS	1646041	1646250	.	-	0	Parent=Os03t0129100-01
Chr03	irgsp1_rep	CDS	1645810	1645938	.	-	0	Parent=Os03t0129100-01
Chr03	irgsp1_rep	CDS	1645339	1645725	.	-	0	Parent=Os03t0129100-01
Chr03	irgsp1_rep	three_prime_UTR	1645164	1645338	.	-	.	Parent=Os03t0129100-01
Chr03	irgsp1_rep	mRNA	1653394	1661497	.	-	.	ID=Os03t0129200-00;Name=Os03t0129200-00;Locus_id=Os03g0129200;Note=Similar to predicted protein.;Transcript_evidence=BT061562 (DDBJ);ORF_evidence=XP_002303419.1 (RefSeq);InterPro=Nucleotide binding protein%2C PINc (IPR006596);TENOR=Os03t0129200-00;KEGG=Os03t0129200-00 (EC:3.1.13.-)
Chr03	irgsp1_rep	five_prime_UTR	1661443	1661497	.	-	.	Parent=Os03t0129200-00
Chr03	irgsp1_rep	CDS	1661389	1661442	.	-	0	Parent=Os03t0129200-00
Chr03	irgsp1_rep	CDS	1661166	1661303	.	-	0	Parent=Os03t0129200-00
Chr03	irgsp1_rep	CDS	1660929	1661086	.	-	0	Parent=Os03t0129200-00
Chr03	irgsp1_rep	CDS	1660248	1660303	.	-	1	Parent=Os03t0129200-00
Chr03	irgsp1_rep	CDS	1660023	1660145	.	-	2	Parent=Os03t0129200-00
Chr03	irgsp1_rep	CDS	1659794	1659924	.	-	2	Parent=Os03t0129200-00
Chr03	irgsp1_rep	CDS	1659458	1659698	.	-	0	Parent=Os03t0129200-00
Chr03	irgsp1_rep	CDS	1659236	1659392	.	-	2	Parent=Os03t0129200-00
Chr03	irgsp1_rep	CDS	1658496	1658740	.	-	1	Parent=Os03t0129200-00
Chr03	irgsp1_rep	CDS	1658365	1658384	.	-	2	Parent=Os03t0129200-00
Chr03	irgsp1_rep	three_prime_UTR	1658228	1658364	.	-	.	Parent=Os03t0129200-00
Chr03	irgsp1_rep	three_prime_UTR	1658082	1658150	.	-	.	Parent=Os03t0129200-00
Chr03	irgsp1_rep	three_prime_UTR	1657308	1657433	.	-	.	Parent=Os03t0129200-00
Chr03	irgsp1_rep	three_prime_UTR	1657117	1657169	.	-	.	Parent=Os03t0129200-00
Chr03	irgsp1_rep	three_prime_UTR	1656808	1656914	.	-	.	Parent=Os03t0129200-00
Chr03	irgsp1_rep	three_prime_UTR	1656647	1656701	.	-	.	Parent=Os03t0129200-00
Chr03	irgsp1_rep	three_prime_UTR	1656437	1656536	.	-	.	Parent=Os03t0129200-00
Chr03	irgsp1_rep	three_prime_UTR	1656248	1656359	.	-	.	Parent=Os03t0129200-00
Chr03	irgsp1_rep	three_prime_UTR	1655433	1655553	.	-	.	Parent=Os03t0129200-00
Chr03	irgsp1_rep	three_prime_UTR	1654921	1654980	.	-	.	Parent=Os03t0129200-00
Chr03	irgsp1_rep	three_prime_UTR	1654732	1654837	.	-	.	Parent=Os03t0129200-00
Chr03	irgsp1_rep	three_prime_UTR	1654261	1654356	.	-	.	Parent=Os03t0129200-00
Chr03	irgsp1_rep	three_prime_UTR	1654097	1654178	.	-	.	Parent=Os03t0129200-00
Chr03	irgsp1_rep	three_prime_UTR	1653942	1654007	.	-	.	Parent=Os03t0129200-00
Chr03	irgsp1_rep	three_prime_UTR	1653394	1653691	.	-	.	Parent=Os03t0129200-00
Chr03	irgsp1_rep	mRNA	1662306	1665491	.	+	.	ID=Os03t0129300-01;Name=Os03t0129300-01;Locus_id=Os03g0129300;RAP-DB Gene Symbol Synonym(s)=OsGAPB%2C OsGAPDHB;RAP-DB Gene Name Synonym(s)=&beta%3B subunit of glyceraldehyde-3-phosphate dehydrogenase%2C chloroplastic glyceraldehyde-3-phosphate dehydrogenase B;Oryzabase Gene Symbol Synonym(s)=GADPH%2C OsGAPDHB%2C GAPDHB%2C OsGAPB%2C GAPB;Oryzabase Gene Name Synonym(s)=glyceraldehyde-3-phosphate dehydrogenase%2C chloroplastic glyceraldehyde-3-phosphate dehydrogenase B%2C chloroplastic GAPDH B subunit%2C beta subunit of glyceraldehyde-3-phosphate dehydrogenase%2C beta subunit of GAPDH;Note=&beta%3B subunit of glyceraldehyde-3-phosphate dehydrogenase%2C Tolerance to low light stress%2C Contribution to the aroma phenotype;Transcript_evidence=AK067755;ORF_evidence=Q9SNK3;GO=Biological Process: glucose metabolic process (GO:0006006),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620),Molecular Function: NADP binding (GO:0050661),Molecular Function: NAD binding (GO:0051287);InterPro=NAD(P)-binding domain superfamily (IPR036291),Glyceraldehyde/Erythrose phosphate dehydrogenase family (IPR020831),Glyceraldehyde-3-phosphate dehydrogenase%2C type I (IPR006424),Glyceraldehyde 3-phosphate dehydrogenase%2C NAD(P) binding domain (IPR020828),Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain (IPR020829),Domain of unknown function CP12 (IPR003823),Glyceraldehyde 3-phosphate dehydrogenase%2C active site (IPR020830);NIAS_FLcDNA=J013118G18;Manual Curation=June 4%2C 2020;Literature_PMID=32488648,24268160;Oryzabase=9711;Expression=AK067755;TENOR=Os03t0129300-01;KEGG=Os03t0129300-01 (EC:1.2.1.13)
Chr03	irgsp1_rep	five_prime_UTR	1662306	1662359	.	+	.	Parent=Os03t0129300-01
Chr03	irgsp1_rep	CDS	1662360	1662437	.	+	0	Parent=Os03t0129300-01
Chr03	irgsp1_rep	CDS	1662519	1662629	.	+	0	Parent=Os03t0129300-01
Chr03	irgsp1_rep	CDS	1663476	1663637	.	+	0	Parent=Os03t0129300-01
Chr03	irgsp1_rep	CDS	1663752	1663919	.	+	0	Parent=Os03t0129300-01
Chr03	irgsp1_rep	CDS	1664002	1664162	.	+	0	Parent=Os03t0129300-01
Chr03	irgsp1_rep	CDS	1664249	1664310	.	+	1	Parent=Os03t0129300-01
Chr03	irgsp1_rep	CDS	1664397	1664446	.	+	2	Parent=Os03t0129300-01
Chr03	irgsp1_rep	CDS	1664566	1664972	.	+	0	Parent=Os03t0129300-01
Chr03	irgsp1_rep	CDS	1665079	1665214	.	+	1	Parent=Os03t0129300-01
Chr03	irgsp1_rep	three_prime_UTR	1665215	1665491	.	+	.	Parent=Os03t0129300-01
Chr03	irgsp1_rep	mRNA	1664246	1665446	.	+	.	ID=Os03t0129300-02;Name=Os03t0129300-02;Locus_id=Os03g0129300;Oryzabase Gene Symbol Synonym(s)=GADPH%2C OsGAPDHB%2C GAPDHB%2C OsGAPB%2C GAPB;Oryzabase Gene Name Synonym(s)=glyceraldehyde-3-phosphate dehydrogenase%2C chloroplastic glyceraldehyde-3-phosphate dehydrogenase B%2C chloroplastic GAPDH B subunit%2C beta subunit of glyceraldehyde-3-phosphate dehydrogenase%2C beta subunit of GAPDH;Note=Similar to cDNA clone:J013118G18%2C full insert sequence.;Transcript_evidence=AK059014 (DDBJ%2C Best hit);ORF_evidence=B4F8L7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620);InterPro=Domain of unknown function CP12 (IPR003823),Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain (IPR020829),Glyceraldehyde 3-phosphate dehydrogenase%2C active site (IPR020830),Glyceraldehyde/Erythrose phosphate dehydrogenase family (IPR020831);NIAS_FLcDNA=001-021-A08;Oryzabase=9711;Expression=AK059014;TENOR=Os03t0129300-02;KEGG=Os03t0129300-02 (EC:1.2.1.13)
Chr03	irgsp1_rep	five_prime_UTR	1664246	1664246	.	+	.	Parent=Os03t0129300-02
Chr03	irgsp1_rep	CDS	1664247	1664310	.	+	0	Parent=Os03t0129300-02
Chr03	irgsp1_rep	CDS	1664397	1664446	.	+	2	Parent=Os03t0129300-02
Chr03	irgsp1_rep	CDS	1664566	1664972	.	+	0	Parent=Os03t0129300-02
Chr03	irgsp1_rep	CDS	1665079	1665214	.	+	1	Parent=Os03t0129300-02
Chr03	irgsp1_rep	three_prime_UTR	1665215	1665446	.	+	.	Parent=Os03t0129300-02
Chr03	irgsp1_rep	mRNA	1667248	1667899	.	+	.	ID=Os03t0129400-01;Name=Os03t0129400-01;Locus_id=Os03g0129400;Note=Conserved hypothetical protein.;Transcript_evidence=AK063857 (DDBJ%2C Best hit);ORF_evidence=Q9SNK2 (UniProt);NIAS_FLcDNA=001-122-D06;Expression=AK063857;TENOR=Os03t0129400-01;KEGG=Os03t0129400-01
Chr03	irgsp1_rep	five_prime_UTR	1667248	1667367	.	+	.	Parent=Os03t0129400-01
Chr03	irgsp1_rep	CDS	1667368	1667495	.	+	0	Parent=Os03t0129400-01
Chr03	irgsp1_rep	CDS	1667594	1667753	.	+	1	Parent=Os03t0129400-01
Chr03	irgsp1_rep	three_prime_UTR	1667754	1667899	.	+	.	Parent=Os03t0129400-01
Chr03	irgsp1_rep	mRNA	1667248	1667796	.	+	.	ID=Os03t0129400-02;Name=Os03t0129400-02;Locus_id=Os03g0129400;Note=Similar to EST AU078206(E20111) corresponds to a region of the predicted gene.;Transcript_evidence=AK099390 (DDBJ%2C Best hit),AK073820 (DDBJ%2C Best hit);ORF_evidence=Q9SNK2 (UniProt);NIAS_FLcDNA=J033077N09,J033067G23;Expression=AK099390;TENOR=Os03t0129400-02;KEGG=Os03t0129400-02
Chr03	irgsp1_rep	five_prime_UTR	1667248	1667561	.	+	.	Parent=Os03t0129400-02
Chr03	irgsp1_rep	CDS	1667562	1667753	.	+	0	Parent=Os03t0129400-02
Chr03	irgsp1_rep	three_prime_UTR	1667754	1667796	.	+	.	Parent=Os03t0129400-02
Chr03	irgsp1_rep	mRNA	1668201	1673176	.	-	.	ID=Os03t0129800-00;Name=Os03t0129800-00;Locus_id=Os03g0129800;Oryzabase Gene Name Synonym(s)=OsMPH1 homologue;Note=Similar to Putataive InsB from Escherichia coli.;Transcript_evidence=BT037421 (DDBJ);ORF_evidence=Q8H883 (UniProt);InterPro=Nucleotide-diphospho-sugar transferase (IPR005069);Oryzabase=21923;TENOR=Os03t0129800-00;KEGG=Os03t0129800-00
Chr03	irgsp1_rep	CDS	1672903	1673176	.	-	0	Parent=Os03t0129800-00
Chr03	irgsp1_rep	CDS	1671223	1671383	.	-	2	Parent=Os03t0129800-00
Chr03	irgsp1_rep	CDS	1668945	1669313	.	-	0	Parent=Os03t0129800-00
Chr03	irgsp1_rep	CDS	1668201	1668680	.	-	0	Parent=Os03t0129800-00
Chr03	irgsp1_rep	mRNA	1685260	1688385	.	-	.	ID=Os03t0129850-00;Name=Os03t0129850-00;Locus_id=Os03g0129850;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os03t0129850-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	1688297	1688385	.	-	0	Parent=Os03t0129850-00
Chr03	irgsp1_rep	CDS	1687912	1688127	.	-	1	Parent=Os03t0129850-00
Chr03	irgsp1_rep	CDS	1685260	1685323	.	-	1	Parent=Os03t0129850-00
Chr03	irgsp1_rep	mRNA	1685564	1689540	.	-	.	ID=Os03t0129900-01;Name=Os03t0129900-01;Locus_id=Os03g0129900;Note=NADH-ubiquinone oxidoreductase B18 subunit family protein.;Transcript_evidence=AK059624 (DDBJ%2C Best hit);ORF_evidence=Q9SNJ7 (UniProt);GO=Cellular Component: mitochondrion (GO:0005739),Molecular Function: NADH dehydrogenase activity (GO:0003954),Molecular Function: NADH dehydrogenase (ubiquinone) activity (GO:0008137);InterPro=NADH:ubiquinone oxidoreductase%2C B18 subunit (IPR008698);NIAS_FLcDNA=001-030-H06;Expression=AK059624;TENOR=Os03t0129900-01;KEGG=Os03t0129900-01 (EC:1.6.5.3%2C EC:1.6.99.3)
Chr03	irgsp1_rep	five_prime_UTR	1689539	1689540	.	-	.	Parent=Os03t0129900-01
Chr03	irgsp1_rep	CDS	1689095	1689538	.	-	0	Parent=Os03t0129900-01
Chr03	irgsp1_rep	three_prime_UTR	1689064	1689094	.	-	.	Parent=Os03t0129900-01
Chr03	irgsp1_rep	three_prime_UTR	1685564	1685769	.	-	.	Parent=Os03t0129900-01
Chr03	irgsp1_rep	mRNA	1706053	1708135	.	+	.	ID=Os03t0130100-01;Name=Os03t0130100-01;Locus_id=Os03g0130100;Note=Similar to Acyl-activating enzyme 11.;Transcript_evidence=AK110783 (DDBJ%2C Best hit);ORF_evidence=NP_001147787.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873),AMP-binding%2C conserved site (IPR020845);NIAS_FLcDNA=002-171-C04;Expression=AK110783;TENOR=Os03t0130100-01;KEGG=Os03t0130100-01
Chr03	irgsp1_rep	five_prime_UTR	1706053	1706180	.	+	.	Parent=Os03t0130100-01
Chr03	irgsp1_rep	CDS	1706181	1706378	.	+	0	Parent=Os03t0130100-01
Chr03	irgsp1_rep	CDS	1706513	1708051	.	+	0	Parent=Os03t0130100-01
Chr03	irgsp1_rep	three_prime_UTR	1708052	1708135	.	+	.	Parent=Os03t0130100-01
Chr03	irgsp1_rep	mRNA	1706399	1711755	.	-	.	ID=Os03t0130200-00;Name=Os03t0130200-00;Locus_id=Os03g0130200;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0040h06 (Wheat FLcDNA);ORF_evidence=Q10S95 (UniProt);TENOR=Os03t0130200-00
Chr03	irgsp1_rep	five_prime_UTR	1711746	1711755	.	-	.	Parent=Os03t0130200-00
Chr03	irgsp1_rep	CDS	1711320	1711745	.	-	0	Parent=Os03t0130200-00
Chr03	irgsp1_rep	CDS	1706399	1707487	.	-	0	Parent=Os03t0130200-00
Chr03	irgsp1_rep	mRNA	1714575	1715192	.	+	.	ID=Os03t0130300-01;Name=Os03t0130300-01;Locus_id=Os03g0130300;RAP-DB Gene Symbol Synonym(s)=OsDEF8;RAP-DB Gene Name Synonym(s)=defensin 8;Oryzabase Gene Symbol Synonym(s)=DEFL8%2C OsDEFL8%2C OsDf-08%2C Df-08;Oryzabase Gene Name Synonym(s)=defensin-like 8;Note=Defensin%2C Plant antimicrobial peptide%2C Pathogen defense;Transcript_evidence=AK120826;ORF_evidence=Q7F8K7;GO=Biological Process: defense response (GO:0006952);InterPro=Knottin%2C scorpion toxin-like superfamily (IPR036574),Defensin%2C plant (IPR008176),Knottin%2C scorpion toxin-like (IPR003614);NIAS_FLcDNA=J023019E10;Manual Curation=April 15%2C 2020;Literature_PMID=29414311;Oryzabase=21075;Expression=AK120826;TENOR=Os03t0130300-01;KEGG=Os03t0130300-01;Subcellular location=extracellular region (GO:0005576)
Chr03	irgsp1_rep	five_prime_UTR	1714575	1714615	.	+	.	Parent=Os03t0130300-01
Chr03	irgsp1_rep	CDS	1714616	1714679	.	+	0	Parent=Os03t0130300-01
Chr03	irgsp1_rep	CDS	1714760	1714941	.	+	2	Parent=Os03t0130300-01
Chr03	irgsp1_rep	three_prime_UTR	1714942	1715192	.	+	.	Parent=Os03t0130300-01
Chr03	irgsp1_rep	mRNA	1715750	1716022	.	-	.	ID=Os03t0130350-00;Name=Os03t0130350-00;Locus_id=Os03g0130350;Note=Similar to predicted protein.;Transcript_evidence=EU943492 (DDBJ);ORF_evidence=XP_002321824.1 (RefSeq);TENOR=Os03t0130350-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	1715825	1716022	.	-	0	Parent=Os03t0130350-00
Chr03	irgsp1_rep	three_prime_UTR	1715750	1715824	.	-	.	Parent=Os03t0130350-00
Chr03	irgsp1_rep	mRNA	1716495	1719588	.	+	.	ID=Os03t0130400-01;Name=Os03t0130400-01;Locus_id=Os03g0130400;Oryzabase Gene Name Synonym(s)=adenylate kinase;Note=Adenylate kinase%2C subfamily protein.;Transcript_evidence=AK070255 (DDBJ%2C Best hit);ORF_evidence=B6SLP1 (UniProt);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Biological Process: nucleotide phosphorylation (GO:0046939),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphotransferase activity%2C phosphate group as acceptor (GO:0016776),Molecular Function: nucleotide kinase activity (GO:0019201),Molecular Function: nucleobase-containing compound kinase activity (GO:0019205);InterPro=Adenylate kinase (IPR000850),Adenylate kinase%2C subfamily (IPR006259);NIAS_FLcDNA=J023043P14;Oryzabase=16098;Expression=AK070255;TENOR=Os03t0130400-01;KEGG=Os03t0130400-01 (EC:2.7.4.3)
Chr03	irgsp1_rep	five_prime_UTR	1716495	1716568	.	+	.	Parent=Os03t0130400-01
Chr03	irgsp1_rep	CDS	1716569	1716892	.	+	0	Parent=Os03t0130400-01
Chr03	irgsp1_rep	CDS	1717972	1718112	.	+	0	Parent=Os03t0130400-01
Chr03	irgsp1_rep	CDS	1718586	1718858	.	+	0	Parent=Os03t0130400-01
Chr03	irgsp1_rep	CDS	1719209	1719352	.	+	0	Parent=Os03t0130400-01
Chr03	irgsp1_rep	three_prime_UTR	1719353	1719588	.	+	.	Parent=Os03t0130400-01
Chr03	irgsp1_rep	mRNA	1719208	1719588	.	+	.	ID=Os03t0130400-02;Name=Os03t0130400-02;Locus_id=Os03g0130400;Oryzabase Gene Name Synonym(s)=adenylate kinase;Note=Similar to ESTs AU065232(E60855).;Transcript_evidence=AK058635 (DDBJ%2C Best hit);ORF_evidence=Q9SNJ4 (UniProt);NIAS_FLcDNA=001-018-D03;Oryzabase=16098;Expression=AK058635;TENOR=Os03t0130400-02;KEGG=Os03t0130400-02
Chr03	irgsp1_rep	five_prime_UTR	1719208	1719208	.	+	.	Parent=Os03t0130400-02
Chr03	irgsp1_rep	CDS	1719209	1719352	.	+	0	Parent=Os03t0130400-02
Chr03	irgsp1_rep	three_prime_UTR	1719353	1719588	.	+	.	Parent=Os03t0130400-02
Chr03	irgsp1_rep	mRNA	1719303	1719628	.	+	.	ID=Os03t0130400-03;Name=Os03t0130400-03;Locus_id=Os03g0130400;Oryzabase Gene Name Synonym(s)=adenylate kinase;Note=Non-protein coding transcript.;Transcript_evidence=AK059424 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-027-E06;Oryzabase=16098;TENOR=Os03t0130400-03
Chr03	irgsp1_rep	exon	1719303	1719628	.	+	.	Parent=Os03t0130400-03
Chr03	irgsp1_rep	mRNA	1720158	1727907	.	-	.	ID=Os03t0130500-01;Name=Os03t0130500-01;Locus_id=Os03g0130500;Note=EF hand domain containing protein.;Transcript_evidence=AK069816 (DDBJ%2C Best hit);ORF_evidence=Q9SNJ3 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515);InterPro=EPS15 homology (EH) (IPR000261),Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J023034E02;Expression=AK069816;TENOR=Os03t0130500-01;KEGG=Os03t0130500-01
Chr03	irgsp1_rep	five_prime_UTR	1727718	1727907	.	-	.	Parent=Os03t0130500-01
Chr03	irgsp1_rep	CDS	1727589	1727717	.	-	0	Parent=Os03t0130500-01
Chr03	irgsp1_rep	CDS	1726111	1727395	.	-	0	Parent=Os03t0130500-01
Chr03	irgsp1_rep	CDS	1725596	1725814	.	-	2	Parent=Os03t0130500-01
Chr03	irgsp1_rep	CDS	1725259	1725473	.	-	2	Parent=Os03t0130500-01
Chr03	irgsp1_rep	CDS	1723713	1723784	.	-	0	Parent=Os03t0130500-01
Chr03	irgsp1_rep	CDS	1723467	1723538	.	-	0	Parent=Os03t0130500-01
Chr03	irgsp1_rep	CDS	1723237	1723335	.	-	0	Parent=Os03t0130500-01
Chr03	irgsp1_rep	CDS	1723059	1723130	.	-	0	Parent=Os03t0130500-01
Chr03	irgsp1_rep	CDS	1722862	1722976	.	-	0	Parent=Os03t0130500-01
Chr03	irgsp1_rep	CDS	1722677	1722745	.	-	2	Parent=Os03t0130500-01
Chr03	irgsp1_rep	CDS	1721853	1722156	.	-	2	Parent=Os03t0130500-01
Chr03	irgsp1_rep	CDS	1721068	1721179	.	-	1	Parent=Os03t0130500-01
Chr03	irgsp1_rep	CDS	1720542	1720985	.	-	0	Parent=Os03t0130500-01
Chr03	irgsp1_rep	three_prime_UTR	1720158	1720541	.	-	.	Parent=Os03t0130500-01
Chr03	irgsp1_rep	mRNA	1720072	1720807	.	-	.	ID=Os03t0130500-02;Name=Os03t0130500-02;Locus_id=Os03g0130500;Note=Similar to ESTs AU031435(E61570).;Transcript_evidence=AK058465 (DDBJ%2C Best hit);ORF_evidence=Q9SNJ3 (UniProt);NIAS_FLcDNA=001-016-A11;Expression=AK058465;TENOR=Os03t0130500-02;KEGG=Os03t0130500-02
Chr03	irgsp1_rep	five_prime_UTR	1720806	1720807	.	-	.	Parent=Os03t0130500-02
Chr03	irgsp1_rep	CDS	1720542	1720805	.	-	0	Parent=Os03t0130500-02
Chr03	irgsp1_rep	three_prime_UTR	1720072	1720541	.	-	.	Parent=Os03t0130500-02
Chr03	irgsp1_rep	mRNA	1727228	1727770	.	+	.	ID=Os03t0130550-00;Name=Os03t0130550-00;Locus_id=Os03g0130550;Note=Hypothetical gene.;Transcript_evidence=BT086993 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0130550-00
Chr03	irgsp1_rep	CDS	1727228	1727377	.	+	0	Parent=Os03t0130550-00
Chr03	irgsp1_rep	CDS	1727568	1727770	.	+	0	Parent=Os03t0130550-00
Chr03	irgsp1_rep	mRNA	1737303	1742634	.	-	.	ID=Os03t0130700-01;Name=Os03t0130700-01;Locus_id=Os03g0130700;Note=Conserved hypothetical protein.;Transcript_evidence=AK100822 (DDBJ%2C Best hit);ORF_evidence=Q10S89 (UniProt);NIAS_FLcDNA=J023122H21;TENOR=Os03t0130700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	1741904	1742634	.	-	.	Parent=Os03t0130700-01
Chr03	irgsp1_rep	five_prime_UTR	1741324	1741331	.	-	.	Parent=Os03t0130700-01
Chr03	irgsp1_rep	CDS	1741158	1741323	.	-	0	Parent=Os03t0130700-01
Chr03	irgsp1_rep	CDS	1740850	1740929	.	-	2	Parent=Os03t0130700-01
Chr03	irgsp1_rep	CDS	1738581	1740341	.	-	0	Parent=Os03t0130700-01
Chr03	irgsp1_rep	CDS	1738314	1738482	.	-	0	Parent=Os03t0130700-01
Chr03	irgsp1_rep	CDS	1737565	1738211	.	-	2	Parent=Os03t0130700-01
Chr03	irgsp1_rep	three_prime_UTR	1737303	1737564	.	-	.	Parent=Os03t0130700-01
Chr03	irgsp1_rep	mRNA	1737302	1742204	.	-	.	ID=Os03t0130700-02;Name=Os03t0130700-02;Locus_id=Os03g0130700;Note=Conserved hypothetical protein.;Transcript_evidence=AK073872 (DDBJ%2C Best hit);ORF_evidence=Q10S89 (UniProt);NIAS_FLcDNA=J033075P08;TENOR=Os03t0130700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	1741904	1742204	.	-	.	Parent=Os03t0130700-02
Chr03	irgsp1_rep	five_prime_UTR	1741324	1741331	.	-	.	Parent=Os03t0130700-02
Chr03	irgsp1_rep	CDS	1741173	1741323	.	-	0	Parent=Os03t0130700-02
Chr03	irgsp1_rep	CDS	1740850	1740929	.	-	2	Parent=Os03t0130700-02
Chr03	irgsp1_rep	CDS	1738581	1740341	.	-	0	Parent=Os03t0130700-02
Chr03	irgsp1_rep	CDS	1738314	1738482	.	-	0	Parent=Os03t0130700-02
Chr03	irgsp1_rep	CDS	1737565	1738211	.	-	2	Parent=Os03t0130700-02
Chr03	irgsp1_rep	three_prime_UTR	1737302	1737564	.	-	.	Parent=Os03t0130700-02
Chr03	irgsp1_rep	mRNA	1737377	1742088	.	-	.	ID=Os03t0130700-03;Name=Os03t0130700-03;Locus_id=Os03g0130700;Note=Conserved hypothetical protein.;Transcript_evidence=AK119886 (DDBJ%2C Best hit);ORF_evidence=Q10S89 (UniProt);NIAS_FLcDNA=002-179-H04;TENOR=Os03t0130700-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	1741904	1742088	.	-	.	Parent=Os03t0130700-03
Chr03	irgsp1_rep	five_prime_UTR	1741324	1741331	.	-	.	Parent=Os03t0130700-03
Chr03	irgsp1_rep	CDS	1741173	1741323	.	-	0	Parent=Os03t0130700-03
Chr03	irgsp1_rep	CDS	1740850	1740929	.	-	2	Parent=Os03t0130700-03
Chr03	irgsp1_rep	CDS	1738581	1740341	.	-	0	Parent=Os03t0130700-03
Chr03	irgsp1_rep	CDS	1738314	1738482	.	-	0	Parent=Os03t0130700-03
Chr03	irgsp1_rep	CDS	1737565	1738211	.	-	2	Parent=Os03t0130700-03
Chr03	irgsp1_rep	three_prime_UTR	1737377	1737564	.	-	.	Parent=Os03t0130700-03
Chr03	irgsp1_rep	mRNA	1745923	1748501	.	-	.	ID=Os03t0130750-01;Name=Os03t0130750-01;Locus_id=Os03g0130750;Note=Similar to predicted protein.;Transcript_evidence=AK110670 (DDBJ%2C Best hit);ORF_evidence=B9FAX3 (UniProt);GO=Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity (GO:0016740),Molecular Function: nucleotide phosphatase activity (GO:0019204);InterPro=Nucleoside-triphosphatase%2C THEP1 type (IPR004948);NIAS_FLcDNA=002-169-G01;Expression=AK110670;TENOR=Os03t0130750-01;KEGG=Os03t0130750-01
Chr03	irgsp1_rep	five_prime_UTR	1748400	1748501	.	-	.	Parent=Os03t0130750-01
Chr03	irgsp1_rep	CDS	1748317	1748399	.	-	0	Parent=Os03t0130750-01
Chr03	irgsp1_rep	CDS	1746997	1747081	.	-	1	Parent=Os03t0130750-01
Chr03	irgsp1_rep	CDS	1746677	1746833	.	-	0	Parent=Os03t0130750-01
Chr03	irgsp1_rep	CDS	1746206	1746321	.	-	2	Parent=Os03t0130750-01
Chr03	irgsp1_rep	three_prime_UTR	1745923	1746205	.	-	.	Parent=Os03t0130750-01
Chr03	irgsp1_rep	mRNA	1752160	1758159	.	+	.	ID=Os03t0130800-01;Name=Os03t0130800-01;Locus_id=Os03g0130800;Note=Bromodomain containing protein.;Transcript_evidence=AK073008 (DDBJ%2C Best hit);ORF_evidence=Q10S86 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Bromodomain (IPR001487);NIAS_FLcDNA=J023149F07;Expression=AK073008;TENOR=Os03t0130800-01;KEGG=Os03t0130800-01
Chr03	irgsp1_rep	five_prime_UTR	1752160	1752211	.	+	.	Parent=Os03t0130800-01
Chr03	irgsp1_rep	CDS	1752212	1752364	.	+	0	Parent=Os03t0130800-01
Chr03	irgsp1_rep	CDS	1752467	1752554	.	+	0	Parent=Os03t0130800-01
Chr03	irgsp1_rep	CDS	1752649	1752736	.	+	2	Parent=Os03t0130800-01
Chr03	irgsp1_rep	CDS	1752847	1752892	.	+	1	Parent=Os03t0130800-01
Chr03	irgsp1_rep	CDS	1753006	1753104	.	+	0	Parent=Os03t0130800-01
Chr03	irgsp1_rep	CDS	1754682	1754750	.	+	0	Parent=Os03t0130800-01
Chr03	irgsp1_rep	CDS	1756025	1756355	.	+	0	Parent=Os03t0130800-01
Chr03	irgsp1_rep	CDS	1756442	1756575	.	+	2	Parent=Os03t0130800-01
Chr03	irgsp1_rep	CDS	1756719	1757570	.	+	0	Parent=Os03t0130800-01
Chr03	irgsp1_rep	three_prime_UTR	1757571	1758159	.	+	.	Parent=Os03t0130800-01
Chr03	irgsp1_rep	mRNA	1757858	1758211	.	+	.	ID=Os03t0130800-02;Name=Os03t0130800-02;Locus_id=Os03g0130800;Note=Non-protein coding transcript.;Transcript_evidence=AK058647 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-018-E10;TENOR=Os03t0130800-02
Chr03	irgsp1_rep	exon	1757858	1758211	.	+	.	Parent=Os03t0130800-02
Chr03	irgsp1_rep	mRNA	1765350	1770210	.	+	.	ID=Os03t0130900-01;Name=Os03t0130900-01;Locus_id=Os03g0130900;CGSNL Gene Symbol=RLCK96;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 96;Oryzabase Gene Symbol Synonym(s)=OsRLCK96;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 96;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK102717 (DDBJ%2C Best hit);ORF_evidence=NP_173489.2 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033105E05;Oryzabase=18805;Expression=AK102717;TENOR=Os03t0130900-01;KEGG=Os03t0130900-01
Chr03	irgsp1_rep	five_prime_UTR	1765350	1766037	.	+	.	Parent=Os03t0130900-01
Chr03	irgsp1_rep	CDS	1766038	1766125	.	+	0	Parent=Os03t0130900-01
Chr03	irgsp1_rep	CDS	1766212	1766381	.	+	2	Parent=Os03t0130900-01
Chr03	irgsp1_rep	CDS	1766489	1766678	.	+	0	Parent=Os03t0130900-01
Chr03	irgsp1_rep	CDS	1768805	1769196	.	+	2	Parent=Os03t0130900-01
Chr03	irgsp1_rep	CDS	1769537	1769842	.	+	0	Parent=Os03t0130900-01
Chr03	irgsp1_rep	three_prime_UTR	1769843	1770210	.	+	.	Parent=Os03t0130900-01
Chr03	irgsp1_rep	mRNA	1765917	1770199	.	+	.	ID=Os03t0130900-02;Name=Os03t0130900-02;Locus_id=Os03g0130900;CGSNL Gene Symbol=RLCK96;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 96;Oryzabase Gene Symbol Synonym(s)=OsRLCK96;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 96;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK105632 (DDBJ%2C Best hit);ORF_evidence=NP_173489.2 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-200-D07;Oryzabase=18805;Expression=AK105632;TENOR=Os03t0130900-02;KEGG=Os03t0130900-02
Chr03	irgsp1_rep	five_prime_UTR	1765917	1766037	.	+	.	Parent=Os03t0130900-02
Chr03	irgsp1_rep	CDS	1766038	1766125	.	+	0	Parent=Os03t0130900-02
Chr03	irgsp1_rep	CDS	1766212	1766381	.	+	2	Parent=Os03t0130900-02
Chr03	irgsp1_rep	CDS	1766489	1766678	.	+	0	Parent=Os03t0130900-02
Chr03	irgsp1_rep	CDS	1768805	1769196	.	+	2	Parent=Os03t0130900-02
Chr03	irgsp1_rep	CDS	1769537	1769842	.	+	0	Parent=Os03t0130900-02
Chr03	irgsp1_rep	three_prime_UTR	1769843	1770199	.	+	.	Parent=Os03t0130900-02
Chr03	irgsp1_rep	mRNA	1774391	1775646	.	-	.	ID=Os03t0130950-00;Name=Os03t0130950-00;Locus_id=Os03g0130950;Note=Hypothetical protein.;Transcript_evidence=EU943065 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0130950-00
Chr03	irgsp1_rep	five_prime_UTR	1775645	1775646	.	-	.	Parent=Os03t0130950-00
Chr03	irgsp1_rep	CDS	1775336	1775644	.	-	0	Parent=Os03t0130950-00
Chr03	irgsp1_rep	three_prime_UTR	1775302	1775335	.	-	.	Parent=Os03t0130950-00
Chr03	irgsp1_rep	three_prime_UTR	1774391	1774548	.	-	.	Parent=Os03t0130950-00
Chr03	irgsp1_rep	mRNA	1774911	1775816	.	+	.	ID=Os03t0131000-01;Name=Os03t0131000-01;Locus_id=Os03g0131000;CGSNL Gene Symbol=RLCK97;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 97;Oryzabase Gene Symbol Synonym(s)=OsRLCK97;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 97;Note=Similar to H0409D10.5 protein.;Transcript_evidence=AK109138 (DDBJ%2C Best hit);ORF_evidence=Q01KH4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=002-155-E06;Oryzabase=18806;TENOR=Os03t0131000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	1774911	1775121	.	+	.	Parent=Os03t0131000-01
Chr03	irgsp1_rep	CDS	1775122	1775682	.	+	0	Parent=Os03t0131000-01
Chr03	irgsp1_rep	three_prime_UTR	1775683	1775816	.	+	.	Parent=Os03t0131000-01
Chr03	irgsp1_rep	mRNA	1776356	1780897	.	-	.	ID=Os03t0131100-01;Name=Os03t0131100-01;Locus_id=Os03g0131100;RAP-DB Gene Symbol Synonym(s)=OsNLP1;RAP-DB Gene Name Synonym(s)=NIN-LIKE PROTEIN 1;Note=NODULE INCEPTION (NIN)-like protein%2C Regulation of nitrogen (N) utilization;Transcript_evidence=AK100046;ORF_evidence=Q10S83;GO=Molecular Function: protein binding (GO:0005515);InterPro=RWP-RK domain (IPR003035),PB1 domain (IPR000270),Protein NLP%2C PB1 domain (IPR034891);NIAS_FLcDNA=J013153P10;Manual Curation=June 26%2C 2020;Literature_PMID=32585013;Expression=AK100046;TENOR=Os03t0131100-01;KEGG=Os03t0131100-01;Subcellular location=nucleus (GO:0005634)
Chr03	irgsp1_rep	five_prime_UTR	1780800	1780897	.	-	.	Parent=Os03t0131100-01
Chr03	irgsp1_rep	CDS	1779945	1780799	.	-	0	Parent=Os03t0131100-01
Chr03	irgsp1_rep	CDS	1779673	1779720	.	-	0	Parent=Os03t0131100-01
Chr03	irgsp1_rep	CDS	1778563	1779592	.	-	0	Parent=Os03t0131100-01
Chr03	irgsp1_rep	CDS	1777283	1778178	.	-	2	Parent=Os03t0131100-01
Chr03	irgsp1_rep	three_prime_UTR	1776683	1777282	.	-	.	Parent=Os03t0131100-01
Chr03	irgsp1_rep	three_prime_UTR	1776356	1776588	.	-	.	Parent=Os03t0131100-01
Chr03	irgsp1_rep	mRNA	1787679	1790806	.	-	.	ID=Os03t0131200-01;Name=Os03t0131200-01;Locus_id=Os03g0131200;RAP-DB Gene Symbol Synonym(s)=CATC%2C OsCat%2C OsCatC%2C OsCATC%2C NOE1%2C noe1%2C catC%2C OsCATC;RAP-DB Gene Name Synonym(s)=CATALASE C%2C catalase C%2C catalase isozyme C%2C nitric oxide excess1;CGSNL Gene Symbol=CATC;CGSNL Gene Name=CATALASE C;Oryzabase Gene Symbol Synonym(s)=OsCat%2C OsCatC%2C OsCATC%2C NOE1%2C noe1%2C catC%2C OsCATC%2C CAT3%2C OsCAT3;Oryzabase Gene Name Synonym(s)=catalase C%2C catalase isozyme C%2C nitric oxide excess1;Note=Catalase%2C Hydrogen peroxide-induced leaf cell death;Transcript_evidence=AK066378;ORF_evidence=Q10S82;GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalase activity (GO:0004096),Molecular Function: heme binding (GO:0020037);InterPro=Catalase%2C mono-functional%2C haem-containing (IPR018028),Catalase%2C mono-functional%2C haem-containing%2C clades 1 and 3 (IPR024711),Catalase core domain (IPR011614),Catalase-like domain (IPR020835),Catalase immune-responsive domain (IPR010582),Catalase active site (IPR024708),Catalase haem-binding site (IPR002226);NIAS_FLcDNA=J013060B21;Manual Curation=September 17%2C 2014;Literature_PMID=22106097;Oryzabase=8109;TENOR=Os03t0131200-01;KEGG=Os03t0131200-01 (EC:1.11.1.6)
Chr03	irgsp1_rep	five_prime_UTR	1790599	1790806	.	-	.	Parent=Os03t0131200-01
Chr03	irgsp1_rep	CDS	1790584	1790598	.	-	0	Parent=Os03t0131200-01
Chr03	irgsp1_rep	CDS	1790391	1790487	.	-	0	Parent=Os03t0131200-01
Chr03	irgsp1_rep	CDS	1788760	1789904	.	-	2	Parent=Os03t0131200-01
Chr03	irgsp1_rep	CDS	1788323	1788390	.	-	0	Parent=Os03t0131200-01
Chr03	irgsp1_rep	CDS	1788117	1788210	.	-	1	Parent=Os03t0131200-01
Chr03	irgsp1_rep	CDS	1787936	1787995	.	-	0	Parent=Os03t0131200-01
Chr03	irgsp1_rep	three_prime_UTR	1787679	1787935	.	-	.	Parent=Os03t0131200-01
Chr03	irgsp1_rep	mRNA	1787713	1790659	.	-	.	ID=Os03t0131200-02;Name=Os03t0131200-02;Locus_id=Os03g0131200;CGSNL Gene Symbol=CATC;CGSNL Gene Name=CATALASE C;Oryzabase Gene Symbol Synonym(s)=OsCat%2C OsCatC%2C OsCATC%2C NOE1%2C noe1%2C catC%2C OsCATC%2C CAT3%2C OsCAT3;Oryzabase Gene Name Synonym(s)=catalase C%2C catalase isozyme C%2C nitric oxide excess1;Note=Similar to Catalase isozyme 2 (EC 1.11.1.6).;Transcript_evidence=AK062174 (DDBJ%2C Best hit);ORF_evidence=B8AME2 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalase activity (GO:0004096),Molecular Function: heme binding (GO:0020037);InterPro=Catalase haem-binding site (IPR002226),Catalase-related immune responsive (IPR010582),Catalase%2C N-terminal (IPR011614),Catalase%2C mono-functional%2C haem-containing (IPR018028),Catalase domain (IPR020835),Catalase active site (IPR024708);NIAS_FLcDNA=001-046-C11;Oryzabase=8109;TENOR=Os03t0131200-02;KEGG=Os03t0131200-02 (EC:1.11.1.6)
Chr03	irgsp1_rep	five_prime_UTR	1790599	1790659	.	-	.	Parent=Os03t0131200-02
Chr03	irgsp1_rep	CDS	1790584	1790598	.	-	0	Parent=Os03t0131200-02
Chr03	irgsp1_rep	CDS	1790391	1790487	.	-	0	Parent=Os03t0131200-02
Chr03	irgsp1_rep	CDS	1788760	1789904	.	-	2	Parent=Os03t0131200-02
Chr03	irgsp1_rep	CDS	1788323	1788390	.	-	0	Parent=Os03t0131200-02
Chr03	irgsp1_rep	CDS	1788117	1788210	.	-	1	Parent=Os03t0131200-02
Chr03	irgsp1_rep	CDS	1787936	1787995	.	-	0	Parent=Os03t0131200-02
Chr03	irgsp1_rep	three_prime_UTR	1787713	1787935	.	-	.	Parent=Os03t0131200-02
Chr03	irgsp1_rep	mRNA	1791608	1796372	.	-	.	ID=Os03t0131300-01;Name=Os03t0131300-01;Locus_id=Os03g0131300;RAP-DB Gene Symbol Synonym(s)=OsDSK2a;RAP-DB Gene Name Synonym(s)=DOMINANT SUPPRESSOR of KAR2;CGSNL Gene Symbol=DSK2A;CGSNL Gene Name=DOMINANT SUPPRESSOR OF KAR2 A;Oryzabase Gene Symbol Synonym(s)=OsDSK2a;Oryzabase Gene Name Synonym(s)=DOMINANT SUPPRESSOR of KAR2 a;Note=UBL-UBA (ubiquitin-like-ubiquitin-associated) protein%2C Mediation of seedling growth%2C Salt responses;Transcript_evidence=AK100656;ORF_evidence=Q10S80;GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin-like domain superfamily (IPR029071),UBA-like superfamily (IPR009060),Ubiquitin domain (IPR000626),Heat shock chaperonin-binding (IPR006636),Ubiquitin-associated domain (IPR015940),Ubiquitin conserved site (IPR019954);NIAS_FLcDNA=J023111G18;Manual Curation=December 13%2C 2019;Literature_PMID=31826965;Oryzabase=23442;Expression=AK100656;TENOR=Os03t0131300-01;KEGG=Os03t0131300-01
Chr03	irgsp1_rep	five_prime_UTR	1796220	1796372	.	-	.	Parent=Os03t0131300-01
Chr03	irgsp1_rep	CDS	1795997	1796219	.	-	0	Parent=Os03t0131300-01
Chr03	irgsp1_rep	CDS	1793666	1794406	.	-	2	Parent=Os03t0131300-01
Chr03	irgsp1_rep	CDS	1793349	1793557	.	-	2	Parent=Os03t0131300-01
Chr03	irgsp1_rep	CDS	1793135	1793248	.	-	0	Parent=Os03t0131300-01
Chr03	irgsp1_rep	CDS	1793008	1793066	.	-	0	Parent=Os03t0131300-01
Chr03	irgsp1_rep	CDS	1792808	1792836	.	-	1	Parent=Os03t0131300-01
Chr03	irgsp1_rep	CDS	1792174	1792257	.	-	2	Parent=Os03t0131300-01
Chr03	irgsp1_rep	CDS	1791901	1792046	.	-	2	Parent=Os03t0131300-01
Chr03	irgsp1_rep	three_prime_UTR	1791608	1791900	.	-	.	Parent=Os03t0131300-01
Chr03	irgsp1_rep	mRNA	1791662	1794409	.	-	.	ID=Os03t0131300-02;Name=Os03t0131300-02;Locus_id=Os03g0131300;CGSNL Gene Symbol=DSK2A;CGSNL Gene Name=DOMINANT SUPPRESSOR OF KAR2 A;Oryzabase Gene Symbol Synonym(s)=OsDSK2a;Oryzabase Gene Name Synonym(s)=DOMINANT SUPPRESSOR of KAR2 a;Note=Similar to Ubiquitin family protein%2C expressed.;Transcript_evidence=AK105699 (DDBJ%2C Best hit);ORF_evidence=Q10S79 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal (IPR000449),Heat shock chaperonin-binding (IPR006636),UBA-like (IPR009060),Ubiquilin (IPR015496),Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (IPR015940);NIAS_FLcDNA=001-201-D05;Oryzabase=23442;Expression=AK105699;TENOR=Os03t0131300-02;KEGG=Os03t0131300-02
Chr03	irgsp1_rep	five_prime_UTR	1794408	1794409	.	-	.	Parent=Os03t0131300-02
Chr03	irgsp1_rep	CDS	1793666	1794407	.	-	0	Parent=Os03t0131300-02
Chr03	irgsp1_rep	CDS	1793349	1793557	.	-	2	Parent=Os03t0131300-02
Chr03	irgsp1_rep	CDS	1793135	1793248	.	-	0	Parent=Os03t0131300-02
Chr03	irgsp1_rep	CDS	1793008	1793066	.	-	0	Parent=Os03t0131300-02
Chr03	irgsp1_rep	CDS	1792808	1792836	.	-	1	Parent=Os03t0131300-02
Chr03	irgsp1_rep	CDS	1792174	1792257	.	-	2	Parent=Os03t0131300-02
Chr03	irgsp1_rep	CDS	1791901	1792046	.	-	2	Parent=Os03t0131300-02
Chr03	irgsp1_rep	three_prime_UTR	1791662	1791900	.	-	.	Parent=Os03t0131300-02
Chr03	irgsp1_rep	mRNA	1791678	1794014	.	+	.	ID=Os03t0131333-00;Name=Os03t0131333-00;Locus_id=Os03g0131333;Note=Conserved hypothetical protein.;Transcript_evidence=BT016881 (DDBJ);ORF_evidence=C4J8J4 (UniProt);TENOR=Os03t0131333-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	1791678	1791867	.	+	.	Parent=Os03t0131333-00
Chr03	irgsp1_rep	CDS	1791868	1792017	.	+	0	Parent=Os03t0131333-00
Chr03	irgsp1_rep	three_prime_UTR	1792018	1792040	.	+	.	Parent=Os03t0131333-00
Chr03	irgsp1_rep	three_prime_UTR	1792162	1792280	.	+	.	Parent=Os03t0131333-00
Chr03	irgsp1_rep	three_prime_UTR	1793059	1793233	.	+	.	Parent=Os03t0131333-00
Chr03	irgsp1_rep	three_prime_UTR	1793334	1794014	.	+	.	Parent=Os03t0131333-00
Chr03	irgsp1_rep	mRNA	1798724	1804320	.	-	.	ID=Os03t0131400-01;Name=Os03t0131400-01;Locus_id=Os03g0131400;Note=Polynucleotide adenylyltransferase region domain containing protein.;Transcript_evidence=AK103714 (DDBJ%2C Best hit);ORF_evidence=B8AME4 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Molecular Function: RNA binding (GO:0003723),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=Poly A polymerase%2C head domain (IPR002646);NIAS_FLcDNA=J033137H24;Expression=AK103714;TENOR=Os03t0131400-01;KEGG=Os03t0131400-01
Chr03	irgsp1_rep	five_prime_UTR	1804289	1804320	.	-	.	Parent=Os03t0131400-01
Chr03	irgsp1_rep	CDS	1804199	1804288	.	-	0	Parent=Os03t0131400-01
Chr03	irgsp1_rep	CDS	1804004	1804088	.	-	0	Parent=Os03t0131400-01
Chr03	irgsp1_rep	CDS	1803578	1803688	.	-	2	Parent=Os03t0131400-01
Chr03	irgsp1_rep	CDS	1802943	1803040	.	-	2	Parent=Os03t0131400-01
Chr03	irgsp1_rep	CDS	1802760	1802846	.	-	0	Parent=Os03t0131400-01
Chr03	irgsp1_rep	CDS	1802528	1802664	.	-	0	Parent=Os03t0131400-01
Chr03	irgsp1_rep	CDS	1802343	1802415	.	-	1	Parent=Os03t0131400-01
Chr03	irgsp1_rep	CDS	1802203	1802248	.	-	0	Parent=Os03t0131400-01
Chr03	irgsp1_rep	CDS	1802022	1802131	.	-	2	Parent=Os03t0131400-01
Chr03	irgsp1_rep	CDS	1801431	1801538	.	-	0	Parent=Os03t0131400-01
Chr03	irgsp1_rep	CDS	1801263	1801322	.	-	0	Parent=Os03t0131400-01
Chr03	irgsp1_rep	CDS	1800850	1800911	.	-	0	Parent=Os03t0131400-01
Chr03	irgsp1_rep	CDS	1799790	1800102	.	-	1	Parent=Os03t0131400-01
Chr03	irgsp1_rep	CDS	1799201	1799497	.	-	0	Parent=Os03t0131400-01
Chr03	irgsp1_rep	three_prime_UTR	1798724	1799200	.	-	.	Parent=Os03t0131400-01
Chr03	irgsp1_rep	mRNA	1799216	1803691	.	+	.	ID=Os03t0131450-00;Name=Os03t0131450-00;Locus_id=Os03g0131450;Note=Non-protein coding transcript.;Transcript_evidence=tplb0042e14 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os03t0131450-00
Chr03	irgsp1_rep	exon	1799216	1799493	.	+	.	Parent=Os03t0131450-00
Chr03	irgsp1_rep	exon	1799786	1800094	.	+	.	Parent=Os03t0131450-00
Chr03	irgsp1_rep	exon	1800842	1800919	.	+	.	Parent=Os03t0131450-00
Chr03	irgsp1_rep	exon	1801377	1801537	.	+	.	Parent=Os03t0131450-00
Chr03	irgsp1_rep	exon	1802021	1802159	.	+	.	Parent=Os03t0131450-00
Chr03	irgsp1_rep	exon	1802322	1802393	.	+	.	Parent=Os03t0131450-00
Chr03	irgsp1_rep	exon	1802509	1802666	.	+	.	Parent=Os03t0131450-00
Chr03	irgsp1_rep	exon	1802861	1803061	.	+	.	Parent=Os03t0131450-00
Chr03	irgsp1_rep	exon	1803600	1803691	.	+	.	Parent=Os03t0131450-00
Chr03	irgsp1_rep	mRNA	1804488	1813229	.	+	.	ID=Os03t0131500-01;Name=Os03t0131500-01;Locus_id=Os03g0131500;Note=Vitamin K epoxide reductase domain containing protein.;Transcript_evidence=AK109755 (DDBJ%2C Best hit);ORF_evidence=B8AME5 (UniProt);InterPro=Thioredoxin-like fold (IPR012336),Vitamin K epoxide reductase (IPR012932);NIAS_FLcDNA=002-146-G02;Expression=AK109755;TENOR=Os03t0131500-01;KEGG=Os03t0131500-01
Chr03	irgsp1_rep	five_prime_UTR	1804488	1804529	.	+	.	Parent=Os03t0131500-01
Chr03	irgsp1_rep	CDS	1804530	1804643	.	+	0	Parent=Os03t0131500-01
Chr03	irgsp1_rep	CDS	1804717	1804987	.	+	0	Parent=Os03t0131500-01
Chr03	irgsp1_rep	CDS	1805311	1805567	.	+	2	Parent=Os03t0131500-01
Chr03	irgsp1_rep	CDS	1805657	1805769	.	+	0	Parent=Os03t0131500-01
Chr03	irgsp1_rep	CDS	1811918	1812065	.	+	1	Parent=Os03t0131500-01
Chr03	irgsp1_rep	CDS	1812262	1812399	.	+	0	Parent=Os03t0131500-01
Chr03	irgsp1_rep	CDS	1812767	1812844	.	+	0	Parent=Os03t0131500-01
Chr03	irgsp1_rep	three_prime_UTR	1812845	1813229	.	+	.	Parent=Os03t0131500-01
Chr03	irgsp1_rep	mRNA	1815345	1816503	.	+	.	ID=Os03t0131800-00;Name=Os03t0131800-00;Locus_id=Os03g0131800;Note=Similar to H0211B05.1 protein.;Transcript_evidence=BT087939 (DDBJ);ORF_evidence=Q01JB1 (UniProt);InterPro=Protein of unknown function DUF1014 (IPR010422);TENOR=Os03t0131800-00;KEGG=Os03t0131800-00
Chr03	irgsp1_rep	five_prime_UTR	1815345	1815438	.	+	.	Parent=Os03t0131800-00
Chr03	irgsp1_rep	CDS	1815439	1816005	.	+	0	Parent=Os03t0131800-00
Chr03	irgsp1_rep	CDS	1816359	1816490	.	+	0	Parent=Os03t0131800-00
Chr03	irgsp1_rep	three_prime_UTR	1816491	1816503	.	+	.	Parent=Os03t0131800-00
Chr03	irgsp1_rep	mRNA	1815383	1816503	.	-	.	ID=Os03t0131825-00;Name=Os03t0131825-00;Locus_id=Os03g0131825;Note=Hypothetical protein.;Transcript_evidence=BT019239 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0131825-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	1816354	1816503	.	-	.	Parent=Os03t0131825-00
Chr03	irgsp1_rep	five_prime_UTR	1815942	1816000	.	-	.	Parent=Os03t0131825-00
Chr03	irgsp1_rep	CDS	1815546	1815941	.	-	0	Parent=Os03t0131825-00
Chr03	irgsp1_rep	three_prime_UTR	1815383	1815545	.	-	.	Parent=Os03t0131825-00
Chr03	irgsp1_rep	mRNA	1817533	1818855	.	-	.	ID=Os03t0131900-01;Name=Os03t0131900-01;Locus_id=Os03g0131900;RAP-DB Gene Symbol Synonym(s)=OscpSRP43%2C cpSRP43;RAP-DB Gene Name Synonym(s)=Chloroplast Signal Recognition Particle 43%2C chloroplast signal recognition particle 43 KD protein;CGSNL Gene Symbol=YGL9;CGSNL Gene Name=YELLOW-GREEN LEAF 9;Oryzabase Gene Symbol Synonym(s)=OscpSRP43%2C cpSRP43%2C PGL3;Oryzabase Gene Name Synonym(s)=Chloroplast Signal Recognition Particle 43%2C chloroplast signal recognition particle 43 KD protein%2C chloroplast signal recognition particle 43 kDa protein%2C yellow green leaf 9%2C pale- green leaf 3;Note=Chloroplast signal recognition particle 43 KD protein%2C Chloroplast development and photosynthesis;Transcript_evidence=Inferred from literature;ORF_evidence=Q8LSQ2;GO=Biological Process: response to light stimulus (GO:0009416),Biological Process: protein import into chloroplast thylakoid membrane (GO:0045038),Molecular Function: protein binding (GO:0005515),Cellular Component: chloroplast (GO:0009507),Cellular Component: signal recognition particle%2C chloroplast targeting (GO:0080085);InterPro=Signal recognition particle 43 kDa protein (IPR030300),Chromo domain-like (IPR016197),Chromo/Chromo shadow domain (IPR000953),Ankyrin repeat-containing domain (IPR020683),Chromo domain (IPR023780),Ankyrin repeat (IPR002110);NIAS_FLcDNA=J013114D14;Manual Curation=November 26%2C 2015;Literature_PMID=26600124;Oryzabase=20299;Expression=AK099900;TENOR=Os03t0131900-01;KEGG=Os03t0131900-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	1818839	1818855	.	-	.	Parent=Os03t0131900-01
Chr03	irgsp1_rep	CDS	1817672	1818838	.	-	0	Parent=Os03t0131900-01
Chr03	irgsp1_rep	three_prime_UTR	1817533	1817671	.	-	.	Parent=Os03t0131900-01
Chr03	irgsp1_rep	mRNA	1817620	1818990	.	+	.	ID=Os03t0131950-00;Name=Os03t0131950-00;Locus_id=Os03g0131950;Note=Hypothetical protein.;Transcript_evidence=AK363670 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0131950-00
Chr03	irgsp1_rep	five_prime_UTR	1817620	1817795	.	+	.	Parent=Os03t0131950-00
Chr03	irgsp1_rep	CDS	1817796	1818779	.	+	0	Parent=Os03t0131950-00
Chr03	irgsp1_rep	three_prime_UTR	1818780	1818990	.	+	.	Parent=Os03t0131950-00
Chr03	irgsp1_rep	mRNA	1822255	1825976	.	+	.	ID=Os03t0132000-01;Name=Os03t0132000-01;Locus_id=Os03g0132000;Oryzabase Gene Symbol Synonym(s)=OsACS4%2C ACS4;Oryzabase Gene Name Synonym(s)=acyl-CoA synthetase 4;Note=Similar to 4-coumarate-CoA ligase-like protein.;Transcript_evidence=AK105769 (DDBJ%2C Best hit),AK121384 (DDBJ%2C Best hit);ORF_evidence=Q10S72 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873),AMP-binding%2C conserved site (IPR020845);NIAS_FLcDNA=001-202-E07,J023127I23;Oryzabase=15669;TENOR=Os03t0132000-01
Chr03	irgsp1_rep	five_prime_UTR	1822255	1822356	.	+	.	Parent=Os03t0132000-01
Chr03	irgsp1_rep	CDS	1822357	1823584	.	+	0	Parent=Os03t0132000-01
Chr03	irgsp1_rep	CDS	1824957	1825102	.	+	2	Parent=Os03t0132000-01
Chr03	irgsp1_rep	CDS	1825210	1825277	.	+	0	Parent=Os03t0132000-01
Chr03	irgsp1_rep	CDS	1825364	1825466	.	+	1	Parent=Os03t0132000-01
Chr03	irgsp1_rep	CDS	1825606	1825719	.	+	0	Parent=Os03t0132000-01
Chr03	irgsp1_rep	three_prime_UTR	1825720	1825976	.	+	.	Parent=Os03t0132000-01
Chr03	irgsp1_rep	mRNA	1831332	1833035	.	+	.	ID=Os03t0132200-01;Name=Os03t0132200-01;Locus_id=Os03g0132200;Oryzabase Gene Symbol Synonym(s)=OsEXPLA1%2C EXPLA1%2C RIP3;Oryzabase Gene Name Synonym(s)=expansion-like A1%2C REL1-interacting protein 3;Note=Expansin-like protein A.;Transcript_evidence=AK061453 (DDBJ%2C Best hit),AK067081 (DDBJ%2C Best hit),AK099870 (DDBJ%2C Best hit);ORF_evidence=Q10S70 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);NIAS_FLcDNA=006-307-G06,J013094I23,J013111F04;Oryzabase=21852;Expression=AK061453;TENOR=Os03t0132200-01;KEGG=Os03t0132200-01
Chr03	irgsp1_rep	five_prime_UTR	1831332	1831389	.	+	.	Parent=Os03t0132200-01
Chr03	irgsp1_rep	CDS	1831390	1831555	.	+	0	Parent=Os03t0132200-01
Chr03	irgsp1_rep	CDS	1831665	1831777	.	+	2	Parent=Os03t0132200-01
Chr03	irgsp1_rep	CDS	1831885	1832063	.	+	0	Parent=Os03t0132200-01
Chr03	irgsp1_rep	CDS	1832343	1832475	.	+	1	Parent=Os03t0132200-01
Chr03	irgsp1_rep	CDS	1832565	1832813	.	+	0	Parent=Os03t0132200-01
Chr03	irgsp1_rep	three_prime_UTR	1832814	1833035	.	+	.	Parent=Os03t0132200-01
Chr03	irgsp1_rep	mRNA	1831422	1832828	.	-	.	ID=Os03t0132250-00;Name=Os03t0132250-00;Locus_id=Os03g0132250;Note=Hypothetical protein.;Transcript_evidence=AK367754 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0132250-00
Chr03	irgsp1_rep	five_prime_UTR	1832563	1832828	.	-	.	Parent=Os03t0132250-00
Chr03	irgsp1_rep	five_prime_UTR	1832194	1832477	.	-	.	Parent=Os03t0132250-00
Chr03	irgsp1_rep	five_prime_UTR	1832016	1832103	.	-	.	Parent=Os03t0132250-00
Chr03	irgsp1_rep	CDS	1831869	1832015	.	-	0	Parent=Os03t0132250-00
Chr03	irgsp1_rep	CDS	1831447	1831758	.	-	0	Parent=Os03t0132250-00
Chr03	irgsp1_rep	three_prime_UTR	1831422	1831446	.	-	.	Parent=Os03t0132250-00
Chr03	irgsp1_rep	mRNA	1836607	1839772	.	-	.	ID=Os03t0132300-01;Name=Os03t0132300-01;Locus_id=Os03g0132300;Note=TB2/DP1 and HVA22 related protein family protein.;Transcript_evidence=AK065483 (DDBJ%2C Best hit);ORF_evidence=B6TB01 (UniProt);InterPro=TB2/DP1/HVA22-related protein (IPR004345);NIAS_FLcDNA=J013008G03;Expression=AK065483;TENOR=Os03t0132300-01;KEGG=Os03t0132300-01
Chr03	irgsp1_rep	five_prime_UTR	1839537	1839772	.	-	.	Parent=Os03t0132300-01
Chr03	irgsp1_rep	five_prime_UTR	1838766	1838780	.	-	.	Parent=Os03t0132300-01
Chr03	irgsp1_rep	CDS	1838734	1838765	.	-	0	Parent=Os03t0132300-01
Chr03	irgsp1_rep	CDS	1838550	1838648	.	-	1	Parent=Os03t0132300-01
Chr03	irgsp1_rep	CDS	1838402	1838458	.	-	1	Parent=Os03t0132300-01
Chr03	irgsp1_rep	CDS	1838245	1838308	.	-	1	Parent=Os03t0132300-01
Chr03	irgsp1_rep	CDS	1837962	1838171	.	-	0	Parent=Os03t0132300-01
Chr03	irgsp1_rep	CDS	1837019	1837423	.	-	0	Parent=Os03t0132300-01
Chr03	irgsp1_rep	three_prime_UTR	1836607	1837018	.	-	.	Parent=Os03t0132300-01
Chr03	irgsp1_rep	mRNA	1844173	1845058	.	-	.	ID=Os03t0132550-00;Name=Os03t0132550-00;Locus_id=Os03g0132550;Note=Hypothetical protein.;Transcript_evidence=EU942482 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0132550-00
Chr03	irgsp1_rep	five_prime_UTR	1844891	1845058	.	-	.	Parent=Os03t0132550-00
Chr03	irgsp1_rep	CDS	1844468	1844890	.	-	0	Parent=Os03t0132550-00
Chr03	irgsp1_rep	three_prime_UTR	1844173	1844467	.	-	.	Parent=Os03t0132550-00
Chr03	irgsp1_rep	mRNA	1852910	1857693	.	+	.	ID=Os03t0132800-01;Name=Os03t0132800-01;Locus_id=Os03g0132800;CGSNL Gene Symbol=RLCK98;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 98;Oryzabase Gene Symbol Synonym(s)=OsRLCK98%2C OsBSK1%2C BSK1%2C OsBSK1-1%2C BSK1-1;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 98%2C BR-signaling kinase 1%2C brassinosteroid-signaling kinase 1%2C brassinosteroid-SIGNALING KINASE 1-1;Note=Similar to protein kinase-like protein [Oryza sativa (japonica cultivar-group)].;Transcript_evidence=AK122069 (DDBJ%2C Best hit),AK104997 (DDBJ%2C Best hit);ORF_evidence=NP_001151339.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Tetratricopeptide-like helical (IPR011990),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033117I10,001-003-D10;Oryzabase=18807;TENOR=Os03t0132800-01
Chr03	irgsp1_rep	five_prime_UTR	1852910	1853023	.	+	.	Parent=Os03t0132800-01
Chr03	irgsp1_rep	CDS	1853024	1853365	.	+	0	Parent=Os03t0132800-01
Chr03	irgsp1_rep	CDS	1853461	1853596	.	+	0	Parent=Os03t0132800-01
Chr03	irgsp1_rep	CDS	1854371	1854504	.	+	2	Parent=Os03t0132800-01
Chr03	irgsp1_rep	CDS	1854930	1855035	.	+	0	Parent=Os03t0132800-01
Chr03	irgsp1_rep	CDS	1855890	1855975	.	+	2	Parent=Os03t0132800-01
Chr03	irgsp1_rep	CDS	1856367	1856555	.	+	0	Parent=Os03t0132800-01
Chr03	irgsp1_rep	CDS	1856682	1856873	.	+	0	Parent=Os03t0132800-01
Chr03	irgsp1_rep	CDS	1856958	1857071	.	+	0	Parent=Os03t0132800-01
Chr03	irgsp1_rep	CDS	1857165	1857461	.	+	0	Parent=Os03t0132800-01
Chr03	irgsp1_rep	three_prime_UTR	1857462	1857693	.	+	.	Parent=Os03t0132800-01
Chr03	irgsp1_rep	mRNA	1860429	1861772	.	+	.	ID=Os03t0132900-01;Name=Os03t0132900-01;Locus_id=Os03g0132900;CGSNL Gene Symbol=CHT11;CGSNL Gene Name=CHITINASE 11;Oryzabase Gene Symbol Synonym(s)=Cht11;Oryzabase Gene Name Synonym(s)=Chitinase11%2C Chitinase 11%2C Pathogenesis related (PR)-3 chitinase 11%2C Pathogenesis related-3 chitinase 11%2C PR-3 chitinase 11;Note=Similar to Chitinase 11.;Transcript_evidence=AK059871 (DDBJ%2C Best hit),AK099355 (DDBJ%2C Best hit);ORF_evidence=Q10S66 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: chitin catabolic process (GO:0006032),Biological Process: cell wall macromolecule catabolic process (GO:0016998),Molecular Function: chitinase activity (GO:0004568);InterPro=Glycoside hydrolase%2C family 19%2C catalytic (IPR000726),Glycoside hydrolase%2C family 19 (IPR016283),Lysozyme-like domain (IPR023346);NIAS_FLcDNA=006-207-E11,J033044P19;Oryzabase=8125;TENOR=Os03t0132900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	1860429	1860493	.	+	.	Parent=Os03t0132900-01
Chr03	irgsp1_rep	CDS	1860494	1860773	.	+	0	Parent=Os03t0132900-01
Chr03	irgsp1_rep	CDS	1860876	1860987	.	+	2	Parent=Os03t0132900-01
Chr03	irgsp1_rep	CDS	1861144	1861522	.	+	1	Parent=Os03t0132900-01
Chr03	irgsp1_rep	three_prime_UTR	1861523	1861772	.	+	.	Parent=Os03t0132900-01
Chr03	irgsp1_rep	mRNA	1862381	1864245	.	-	.	ID=Os03t0133000-01;Name=Os03t0133000-01;Locus_id=Os03g0133000;RAP-DB Gene Symbol Synonym(s)=NAC22%2C ONAC022;RAP-DB Gene Name Synonym(s)=NAC DOMAIN-CONTAINING PROTEIN 22;CGSNL Gene Symbol=NAC22;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 22;Oryzabase Gene Symbol Synonym(s)=ONAC022%2C ONAC22;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 022%2C NAC domain-containing protein 22;Note=NAC transcription factor%2C Drought and salt stress tolerance%2C Modulation of ABA-mediated pathway;Transcript_evidence=AK107090;ORF_evidence=Q10S65;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=NAC domain (IPR003441);NIAS_FLcDNA=002-121-G12;Manual Curation=June 15%2C 2017;Literature_PMID=26834774;Oryzabase=11470;Expression=AK107090;TENOR=Os03t0133000-01;KEGG=Os03t0133000-01;Subcellular location=nucleus (GO:0005634)
Chr03	irgsp1_rep	five_prime_UTR	1864121	1864245	.	-	.	Parent=Os03t0133000-01
Chr03	irgsp1_rep	CDS	1863931	1864120	.	-	0	Parent=Os03t0133000-01
Chr03	irgsp1_rep	CDS	1863542	1863828	.	-	2	Parent=Os03t0133000-01
Chr03	irgsp1_rep	CDS	1862576	1863049	.	-	0	Parent=Os03t0133000-01
Chr03	irgsp1_rep	three_prime_UTR	1862381	1862575	.	-	.	Parent=Os03t0133000-01
Chr03	irgsp1_rep	mRNA	1863550	1864094	.	+	.	ID=Os03t0133050-00;Name=Os03t0133050-00;Locus_id=Os03g0133050;Note=Non-protein coding transcript.;Transcript_evidence=FP093663 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0133050-00
Chr03	irgsp1_rep	exon	1863550	1864094	.	+	.	Parent=Os03t0133050-00
Chr03	irgsp1_rep	mRNA	1870804	1871499	.	+	.	ID=Os03t0133100-01;Name=Os03t0133100-01;Locus_id=Os03g0133100;Note=Conserved hypothetical protein.;Transcript_evidence=AK063608 (DDBJ%2C Best hit),AK119680 (DDBJ%2C Best hit);ORF_evidence=A2XC50 (UniProt);NIAS_FLcDNA=001-118-C12,002-156-H10;TENOR=Os03t0133100-01
Chr03	irgsp1_rep	five_prime_UTR	1870804	1870886	.	+	.	Parent=Os03t0133100-01
Chr03	irgsp1_rep	CDS	1870887	1871234	.	+	0	Parent=Os03t0133100-01
Chr03	irgsp1_rep	three_prime_UTR	1871235	1871499	.	+	.	Parent=Os03t0133100-01
Chr03	irgsp1_rep	mRNA	1873291	1878362	.	+	.	ID=Os03t0133300-01;Name=Os03t0133300-01;Locus_id=Os03g0133300;Note=Similar to F7F22.5.;Transcript_evidence=AK064510 (DDBJ%2C Best hit);ORF_evidence=Q9SHN5 (UniProt);NIAS_FLcDNA=002-111-E05;TENOR=Os03t0133300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	1873291	1873575	.	+	.	Parent=Os03t0133300-01
Chr03	irgsp1_rep	five_prime_UTR	1873854	1873866	.	+	.	Parent=Os03t0133300-01
Chr03	irgsp1_rep	CDS	1873867	1873895	.	+	0	Parent=Os03t0133300-01
Chr03	irgsp1_rep	CDS	1874172	1874263	.	+	1	Parent=Os03t0133300-01
Chr03	irgsp1_rep	CDS	1874403	1874596	.	+	2	Parent=Os03t0133300-01
Chr03	irgsp1_rep	CDS	1875080	1875119	.	+	0	Parent=Os03t0133300-01
Chr03	irgsp1_rep	CDS	1875285	1875366	.	+	2	Parent=Os03t0133300-01
Chr03	irgsp1_rep	CDS	1876523	1876600	.	+	1	Parent=Os03t0133300-01
Chr03	irgsp1_rep	CDS	1876695	1876820	.	+	1	Parent=Os03t0133300-01
Chr03	irgsp1_rep	CDS	1877095	1877216	.	+	1	Parent=Os03t0133300-01
Chr03	irgsp1_rep	CDS	1877569	1877608	.	+	2	Parent=Os03t0133300-01
Chr03	irgsp1_rep	CDS	1877801	1877875	.	+	1	Parent=Os03t0133300-01
Chr03	irgsp1_rep	CDS	1877965	1878136	.	+	1	Parent=Os03t0133300-01
Chr03	irgsp1_rep	three_prime_UTR	1878137	1878362	.	+	.	Parent=Os03t0133300-01
Chr03	irgsp1_rep	mRNA	1878911	1881709	.	+	.	ID=Os03t0133400-01;Name=Os03t0133400-01;Locus_id=Os03g0133400;RAP-DB Gene Symbol Synonym(s)=CEBiP%2C OsCEBiP;RAP-DB Gene Name Synonym(s)=chitin-elicitor binding protein;CGSNL Gene Symbol=CEBiP;CGSNL Gene Name=CHITIN ELICITOR BINDING PROTEIN;Oryzabase Gene Symbol Synonym(s)=CEBIP%2C Os-LYP1%2C LYP1%2C OsCEBiP;Oryzabase Gene Name Synonym(s)=Chitin elicitor-binding protein%2C chitin-elicitor binding protein%2C lysin motif-containing protein 1%2C chitin oligosaccharide elicitor-binding protein;Note=Lysine motif (LysM) receptor-like protein (RLP)%2C Chitin oligosaccharide elicitor-binding protein%2C Perception and transduction of chitin elicitor signal for defense responses;Transcript_evidence=AK073032;ORF_evidence=Q8H8C7;InterPro=LysM domain superfamily (IPR036779),LysM domain (IPR018392);NIAS_FLcDNA=J023146H06;Manual Curation=July 14%2C 2020;Literature_PMID=27238968,24395781,16829581;Oryzabase=7114;Expression=AK073032;TENOR=Os03t0133400-01;KEGG=Os03t0133400-01
Chr03	irgsp1_rep	five_prime_UTR	1878911	1878996	.	+	.	Parent=Os03t0133400-01
Chr03	irgsp1_rep	CDS	1878997	1879663	.	+	0	Parent=Os03t0133400-01
Chr03	irgsp1_rep	CDS	1880769	1880889	.	+	2	Parent=Os03t0133400-01
Chr03	irgsp1_rep	CDS	1880982	1881169	.	+	1	Parent=Os03t0133400-01
Chr03	irgsp1_rep	CDS	1881261	1881355	.	+	2	Parent=Os03t0133400-01
Chr03	irgsp1_rep	three_prime_UTR	1881356	1881709	.	+	.	Parent=Os03t0133400-01
Chr03	irgsp1_rep	mRNA	1882042	1884078	.	-	.	ID=Os03t0133500-01;Name=Os03t0133500-01;Locus_id=Os03g0133500;Oryzabase Gene Symbol Synonym(s)=OsACS;Oryzabase Gene Name Synonym(s)=Acyl-CoA synthetase;Note=Similar to Adenosine monophosphate binding protein 1 AMPBP1.;Transcript_evidence=AK066406 (DDBJ%2C Best hit);ORF_evidence=XP_002893118.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873),AMP-binding%2C conserved site (IPR020845);NIAS_FLcDNA=J013060C21;Oryzabase=13560;Expression=AK066406;TENOR=Os03t0133500-01;KEGG=Os03t0133500-01
Chr03	irgsp1_rep	five_prime_UTR	1883994	1884078	.	-	.	Parent=Os03t0133500-01
Chr03	irgsp1_rep	CDS	1883796	1883993	.	-	0	Parent=Os03t0133500-01
Chr03	irgsp1_rep	CDS	1882250	1883704	.	-	0	Parent=Os03t0133500-01
Chr03	irgsp1_rep	three_prime_UTR	1882042	1882249	.	-	.	Parent=Os03t0133500-01
Chr03	irgsp1_rep	mRNA	1882278	1883708	.	+	.	ID=Os03t0133650-00;Name=Os03t0133650-00;Locus_id=Os03g0133650;Note=Hypothetical gene.;Transcript_evidence=EU941562 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0133650-00;KEGG=Os03t0133650-00
Chr03	irgsp1_rep	five_prime_UTR	1882278	1882279	.	+	.	Parent=Os03t0133650-00
Chr03	irgsp1_rep	CDS	1882280	1883428	.	+	0	Parent=Os03t0133650-00
Chr03	irgsp1_rep	three_prime_UTR	1883429	1883708	.	+	.	Parent=Os03t0133650-00
Chr03	irgsp1_rep	mRNA	1885977	1891066	.	-	.	ID=Os03t0133800-01;Name=Os03t0133800-01;Locus_id=Os03g0133800;Note=Similar to predicted protein.;Transcript_evidence=AK243551 (DDBJ%2C Best hit);ORF_evidence=XP_002893118.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873),AMP-binding%2C conserved site (IPR020845);NIAS_FLcDNA=J100079G23;TENOR=Os03t0133800-01;KEGG=Os03t0133800-01
Chr03	irgsp1_rep	five_prime_UTR	1891064	1891066	.	-	.	Parent=Os03t0133800-01
Chr03	irgsp1_rep	CDS	1890602	1891063	.	-	0	Parent=Os03t0133800-01
Chr03	irgsp1_rep	CDS	1886176	1887633	.	-	0	Parent=Os03t0133800-01
Chr03	irgsp1_rep	three_prime_UTR	1885977	1886175	.	-	.	Parent=Os03t0133800-01
Chr03	irgsp1_rep	mRNA	1886173	1887657	.	+	.	ID=Os03t0133825-00;Name=Os03t0133825-00;Locus_id=Os03g0133825;Note=Hypothetical gene.;Transcript_evidence=EU941562 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0133825-00;KEGG=Os03t0133825-00
Chr03	irgsp1_rep	five_prime_UTR	1886173	1886307	.	+	.	Parent=Os03t0133825-00
Chr03	irgsp1_rep	CDS	1886308	1887399	.	+	0	Parent=Os03t0133825-00
Chr03	irgsp1_rep	three_prime_UTR	1887400	1887657	.	+	.	Parent=Os03t0133825-00
Chr03	irgsp1_rep	mRNA	1890575	1891309	.	+	.	ID=Os03t0133850-01;Name=Os03t0133850-01;Locus_id=Os03g0133850;Note=Hypothetical gene.;Transcript_evidence=AK109312 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-188-F07;Expression=AK109312;TENOR=Os03t0133850-01;KEGG=Os03t0133850-01
Chr03	irgsp1_rep	CDS	1890575	1890859	.	+	0	Parent=Os03t0133850-01
Chr03	irgsp1_rep	three_prime_UTR	1890860	1891309	.	+	.	Parent=Os03t0133850-01
Chr03	irgsp1_rep	mRNA	1892260	1892480	.	-	.	ID=Os03t0133875-00;Name=Os03t0133875-00;Locus_id=Os03g0133875;Note=Conserved hypothetical protein.;Transcript_evidence=EU942030 (DDBJ);ORF_evidence=B6TW49 (UniProt);TENOR=Os03t0133875-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	1892404	1892480	.	-	.	Parent=Os03t0133875-00
Chr03	irgsp1_rep	CDS	1892260	1892403	.	-	0	Parent=Os03t0133875-00
Chr03	irgsp1_rep	mRNA	1892829	1897309	.	-	.	ID=Os03t0133900-01;Name=Os03t0133900-01;Locus_id=Os03g0133900;Oryzabase Gene Symbol Synonym(s)=OsSAT%2C SAT;Oryzabase Gene Name Synonym(s)=serine acetyl transferase;Note=Similar to Serine acetyltransferase (EC 2.3.1.30) (Sat-106).;Transcript_evidence=AK067089 (DDBJ%2C Best hit);ORF_evidence=NP_195289.3 (RefSeq);GO=Biological Process: cysteine biosynthetic process from serine (GO:0006535),Cellular Component: cytoplasm (GO:0005737),Molecular Function: serine O-acetyltransferase activity (GO:0009001),Molecular Function: transferase activity (GO:0016740);InterPro=Bacterial transferase hexapeptide repeat (IPR001451),Serine O-acetyltransferase (IPR005881),Serine acetyltransferase%2C N-terminal (IPR010493),Trimeric LpxA-like (IPR011004),Hexapeptide transferase%2C conserved site (IPR018357);NIAS_FLcDNA=J013095F21;Oryzabase=21103;Expression=AK067089;TENOR=Os03t0133900-01;KEGG=Os03t0133900-01 (EC:2.3.1.30)
Chr03	irgsp1_rep	five_prime_UTR	1897178	1897309	.	-	.	Parent=Os03t0133900-01
Chr03	irgsp1_rep	CDS	1896905	1897177	.	-	0	Parent=Os03t0133900-01
Chr03	irgsp1_rep	CDS	1895939	1896136	.	-	0	Parent=Os03t0133900-01
Chr03	irgsp1_rep	CDS	1895755	1895814	.	-	0	Parent=Os03t0133900-01
Chr03	irgsp1_rep	CDS	1895539	1895634	.	-	0	Parent=Os03t0133900-01
Chr03	irgsp1_rep	CDS	1895424	1895448	.	-	0	Parent=Os03t0133900-01
Chr03	irgsp1_rep	CDS	1895038	1895132	.	-	2	Parent=Os03t0133900-01
Chr03	irgsp1_rep	CDS	1894649	1894815	.	-	0	Parent=Os03t0133900-01
Chr03	irgsp1_rep	CDS	1893837	1893910	.	-	1	Parent=Os03t0133900-01
Chr03	irgsp1_rep	CDS	1893678	1893737	.	-	2	Parent=Os03t0133900-01
Chr03	irgsp1_rep	CDS	1893323	1893339	.	-	2	Parent=Os03t0133900-01
Chr03	irgsp1_rep	three_prime_UTR	1892829	1893322	.	-	.	Parent=Os03t0133900-01
Chr03	irgsp1_rep	mRNA	1909201	1919394	.	+	.	ID=Os03t0134300-01;Name=Os03t0134300-01;Locus_id=Os03g0134300;Note=Similar to ATP phosphoribosyl transferase.;Transcript_evidence=AK102053 (DDBJ%2C Best hit);ORF_evidence=Q56UT2 (UniProt);GO=Biological Process: histidine biosynthetic process (GO:0000105),Cellular Component: cytoplasm (GO:0005737),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: ATP phosphoribosyltransferase activity (GO:0003879);InterPro=Histidine biosynthesis HisG: ATP phosphoribosyltransferase (IPR001348),Nitrogen regulatory PII-like%2C alpha/beta (IPR011322),Histidine biosynthesis HisG%2C C-terminal (IPR013115),ATP phosphoribosyltransferase%2C catalytic domain (IPR013820),Nitrogen regulatory protein PII/ATP phosphoribosyltransferase%2C C-terminal (IPR015867),ATP phosphoribosyltransferase%2C conserved site (IPR018198);NIAS_FLcDNA=J033082C14;Expression=AK102053;TENOR=Os03t0134300-01;KEGG=Os03t0134300-01 (EC:2.4.2.17)
Chr03	irgsp1_rep	five_prime_UTR	1909201	1909330	.	+	.	Parent=Os03t0134300-01
Chr03	irgsp1_rep	CDS	1909331	1909600	.	+	0	Parent=Os03t0134300-01
Chr03	irgsp1_rep	CDS	1909709	1909768	.	+	0	Parent=Os03t0134300-01
Chr03	irgsp1_rep	CDS	1910664	1910777	.	+	0	Parent=Os03t0134300-01
Chr03	irgsp1_rep	CDS	1916668	1916733	.	+	0	Parent=Os03t0134300-01
Chr03	irgsp1_rep	CDS	1916823	1916930	.	+	0	Parent=Os03t0134300-01
Chr03	irgsp1_rep	CDS	1917027	1917110	.	+	0	Parent=Os03t0134300-01
Chr03	irgsp1_rep	CDS	1917593	1917694	.	+	0	Parent=Os03t0134300-01
Chr03	irgsp1_rep	CDS	1917833	1917946	.	+	0	Parent=Os03t0134300-01
Chr03	irgsp1_rep	CDS	1918025	1918105	.	+	0	Parent=Os03t0134300-01
Chr03	irgsp1_rep	CDS	1918482	1918601	.	+	0	Parent=Os03t0134300-01
Chr03	irgsp1_rep	CDS	1918949	1919044	.	+	0	Parent=Os03t0134300-01
Chr03	irgsp1_rep	three_prime_UTR	1919045	1919394	.	+	.	Parent=Os03t0134300-01
Chr03	irgsp1_rep	mRNA	1919768	1922021	.	-	.	ID=Os03t0134500-00;Name=Os03t0134500-00;Locus_id=Os03g0134500;Note=CytoChrome p450 (CYP78A9).;Transcript_evidence=AK354603 (DDBJ);ORF_evidence=B6SXJ4 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os03t0134500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	1921993	1922021	.	-	.	Parent=Os03t0134500-00
Chr03	irgsp1_rep	CDS	1920967	1921992	.	-	0	Parent=Os03t0134500-00
Chr03	irgsp1_rep	CDS	1920043	1920660	.	-	0	Parent=Os03t0134500-00
Chr03	irgsp1_rep	three_prime_UTR	1919768	1920042	.	-	.	Parent=Os03t0134500-00
Chr03	irgsp1_rep	mRNA	1920124	1920663	.	+	.	ID=Os03t0134550-00;Name=Os03t0134550-00;Locus_id=Os03g0134550;Note=Hypothetical protein.;Transcript_evidence=EU942896 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0134550-00
Chr03	irgsp1_rep	five_prime_UTR	1920124	1920125	.	+	.	Parent=Os03t0134550-00
Chr03	irgsp1_rep	CDS	1920126	1920482	.	+	0	Parent=Os03t0134550-00
Chr03	irgsp1_rep	three_prime_UTR	1920483	1920663	.	+	.	Parent=Os03t0134550-00
Chr03	irgsp1_rep	mRNA	1926259	1929765	.	+	.	ID=Os03t0134600-01;Name=Os03t0134600-01;Locus_id=Os03g0134600;Note=Hypothetical gene.;Transcript_evidence=AK288675 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090059E06;TENOR=Os03t0134600-01;KEGG=Os03t0134600-01
Chr03	irgsp1_rep	five_prime_UTR	1926259	1928416	.	+	.	Parent=Os03t0134600-01
Chr03	irgsp1_rep	CDS	1928417	1928806	.	+	0	Parent=Os03t0134600-01
Chr03	irgsp1_rep	three_prime_UTR	1928807	1929765	.	+	.	Parent=Os03t0134600-01
Chr03	irgsp1_rep	mRNA	1936269	1937270	.	+	.	ID=Os03t0134800-00;Name=Os03t0134800-00;Locus_id=Os03g0134800;Note=Similar to IQ calmodulin-binding motif family protein%2C expressed.;Transcript_evidence=BT084812 (DDBJ);ORF_evidence=Q8H8D5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);TENOR=Os03t0134800-00
Chr03	irgsp1_rep	CDS	1936269	1936994	.	+	0	Parent=Os03t0134800-00
Chr03	irgsp1_rep	CDS	1937085	1937270	.	+	0	Parent=Os03t0134800-00
Chr03	irgsp1_rep	mRNA	1938240	1939691	.	-	.	ID=Os03t0134900-01;Name=Os03t0134900-01;Locus_id=Os03g0134900;CGSNL Gene Symbol=GSTF14;CGSNL Gene Name=PHI GLUTATHIONE S-TRANSFERASE 14;Oryzabase Gene Symbol Synonym(s)=OsGSTF14%2C GST14;Oryzabase Gene Name Synonym(s)=glutathione S-transferase 14;Note=Similar to Glutathione S-transferase GSTF14 (Fragment).;Transcript_evidence=AK102889 (DDBJ%2C Best hit);ORF_evidence=Q6QN20 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=J033112M16;Oryzabase=9516;Expression=AK102889;TENOR=Os03t0134900-01;KEGG=Os03t0134900-01
Chr03	irgsp1_rep	five_prime_UTR	1939601	1939691	.	-	.	Parent=Os03t0134900-01
Chr03	irgsp1_rep	CDS	1939445	1939600	.	-	0	Parent=Os03t0134900-01
Chr03	irgsp1_rep	CDS	1939322	1939370	.	-	0	Parent=Os03t0134900-01
Chr03	irgsp1_rep	CDS	1938486	1939240	.	-	2	Parent=Os03t0134900-01
Chr03	irgsp1_rep	three_prime_UTR	1938240	1938485	.	-	.	Parent=Os03t0134900-01
Chr03	irgsp1_rep	mRNA	1948386	1949543	.	-	.	ID=Os03t0135100-01;Name=Os03t0135100-01;Locus_id=Os03g0135100;CGSNL Gene Symbol=GSTF15;CGSNL Gene Name=PHI GLUTATHIONE S-TRANSFERASE 15;Oryzabase Gene Symbol Synonym(s)=OsGSTF15;Note=Glutathione S-transferase GSTF15.;Transcript_evidence=AK059955 (DDBJ%2C Best hit);ORF_evidence=NP_001104982.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=006-211-D02;Oryzabase=9517;Expression=AK059955;TENOR=Os03t0135100-01;KEGG=Os03t0135100-01
Chr03	irgsp1_rep	five_prime_UTR	1949436	1949543	.	-	.	Parent=Os03t0135100-01
Chr03	irgsp1_rep	CDS	1949283	1949435	.	-	0	Parent=Os03t0135100-01
Chr03	irgsp1_rep	CDS	1949117	1949165	.	-	0	Parent=Os03t0135100-01
Chr03	irgsp1_rep	CDS	1948551	1949026	.	-	2	Parent=Os03t0135100-01
Chr03	irgsp1_rep	three_prime_UTR	1948386	1948550	.	-	.	Parent=Os03t0135100-01
Chr03	irgsp1_rep	mRNA	1948605	1949028	.	+	.	ID=Os03t0135150-00;Name=Os03t0135150-00;Locus_id=Os03g0135150;Note=Hypothetical protein.;Transcript_evidence=EU947713 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0135150-00
Chr03	irgsp1_rep	CDS	1948605	1949024	.	+	0	Parent=Os03t0135150-00
Chr03	irgsp1_rep	three_prime_UTR	1949025	1949028	.	+	.	Parent=Os03t0135150-00
Chr03	irgsp1_rep	mRNA	1952302	1952932	.	-	.	ID=Os03t0135200-01;Name=Os03t0135200-01;Locus_id=Os03g0135200;CGSNL Gene Symbol=GSTF16;CGSNL Gene Name=PHI GLUTATHIONE S-TRANSFERASE 16;Oryzabase Gene Symbol Synonym(s)=OsGSTF16;Note=Similar to Glutathione S-transferase GST 9 (EC 2.5.1.18).;Transcript_evidence=AK059226 (DDBJ%2C Best hit);ORF_evidence=Q10S49 (UniProt);InterPro=Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=001-024-D08;Oryzabase=9518;Expression=AK059226;TENOR=Os03t0135200-01;KEGG=Os03t0135200-01 (EC:2.5.1.18)
Chr03	irgsp1_rep	CDS	1952543	1952932	.	-	0	Parent=Os03t0135200-01
Chr03	irgsp1_rep	three_prime_UTR	1952302	1952542	.	-	.	Parent=Os03t0135200-01
Chr03	irgsp1_rep	mRNA	1954717	1955959	.	-	.	ID=Os03t0135300-01;Name=Os03t0135300-01;Locus_id=Os03g0135300;CGSNL Gene Symbol=GSTF3;CGSNL Gene Name=PHI GLUTATHIONE S-TRANSFERASE 3;Oryzabase Gene Symbol Synonym(s)=OsGSTF3%2C gstf3;Note=Similar to Glutathione S-transferase GST 10 (EC 2.5.1.18).;Transcript_evidence=AK071745 (DDBJ%2C Best hit),AK104680 (DDBJ%2C Best hit);ORF_evidence=B4FTF8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=J023107J18,001-035-F06;Oryzabase=9505;TENOR=Os03t0135300-01
Chr03	irgsp1_rep	five_prime_UTR	1955882	1955959	.	-	.	Parent=Os03t0135300-01
Chr03	irgsp1_rep	CDS	1955680	1955881	.	-	0	Parent=Os03t0135300-01
Chr03	irgsp1_rep	CDS	1954906	1955378	.	-	2	Parent=Os03t0135300-01
Chr03	irgsp1_rep	three_prime_UTR	1954717	1954905	.	-	.	Parent=Os03t0135300-01
Chr03	irgsp1_rep	mRNA	1956859	1959763	.	-	.	ID=Os03t0135400-01;Name=Os03t0135400-01;Locus_id=Os03g0135400;Oryzabase Gene Symbol Synonym(s)=OsFbox128%2C Os_F0506;Oryzabase Gene Name Synonym(s)=F-box protein 128;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK100737 (DDBJ%2C Best hit);ORF_evidence=XP_002312937.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810);NIAS_FLcDNA=J023118C14;Oryzabase=16919;Expression=AK100737;TENOR=Os03t0135400-01;KEGG=Os03t0135400-01
Chr03	irgsp1_rep	five_prime_UTR	1959732	1959763	.	-	.	Parent=Os03t0135400-01
Chr03	irgsp1_rep	CDS	1959537	1959731	.	-	0	Parent=Os03t0135400-01
Chr03	irgsp1_rep	CDS	1959216	1959421	.	-	0	Parent=Os03t0135400-01
Chr03	irgsp1_rep	CDS	1958926	1959019	.	-	1	Parent=Os03t0135400-01
Chr03	irgsp1_rep	CDS	1957201	1958622	.	-	0	Parent=Os03t0135400-01
Chr03	irgsp1_rep	three_prime_UTR	1956859	1957200	.	-	.	Parent=Os03t0135400-01
Chr03	irgsp1_rep	mRNA	1970292	1971508	.	+	.	ID=Os03t0135550-01;Name=Os03t0135550-01;Locus_id=Os03g0135550;Note=Hypothetical gene.;Transcript_evidence=AK242565 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090004L04;TENOR=Os03t0135550-01;KEGG=Os03t0135550-01
Chr03	irgsp1_rep	five_prime_UTR	1970292	1970975	.	+	.	Parent=Os03t0135550-01
Chr03	irgsp1_rep	CDS	1970976	1971197	.	+	0	Parent=Os03t0135550-01
Chr03	irgsp1_rep	three_prime_UTR	1971198	1971508	.	+	.	Parent=Os03t0135550-01
Chr03	irgsp1_rep	mRNA	1970948	1979567	.	-	.	ID=Os03t0135600-01;Name=Os03t0135600-01;Locus_id=Os03g0135600;Note=Similar to Ankyrin repeat protein.;Transcript_evidence=AK241598 (DDBJ%2C Best hit);ORF_evidence=B6THC5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J065183G03;TENOR=Os03t0135600-01;KEGG=Os03t0135600-01
Chr03	irgsp1_rep	five_prime_UTR	1979504	1979567	.	-	.	Parent=Os03t0135600-01
Chr03	irgsp1_rep	CDS	1978783	1979503	.	-	0	Parent=Os03t0135600-01
Chr03	irgsp1_rep	CDS	1978295	1978371	.	-	2	Parent=Os03t0135600-01
Chr03	irgsp1_rep	CDS	1977857	1977955	.	-	0	Parent=Os03t0135600-01
Chr03	irgsp1_rep	CDS	1977648	1977746	.	-	0	Parent=Os03t0135600-01
Chr03	irgsp1_rep	CDS	1977372	1977470	.	-	0	Parent=Os03t0135600-01
Chr03	irgsp1_rep	CDS	1977197	1977295	.	-	0	Parent=Os03t0135600-01
Chr03	irgsp1_rep	CDS	1976781	1976912	.	-	0	Parent=Os03t0135600-01
Chr03	irgsp1_rep	three_prime_UTR	1976685	1976780	.	-	.	Parent=Os03t0135600-01
Chr03	irgsp1_rep	three_prime_UTR	1976511	1976609	.	-	.	Parent=Os03t0135600-01
Chr03	irgsp1_rep	three_prime_UTR	1970948	1971145	.	-	.	Parent=Os03t0135600-01
Chr03	irgsp1_rep	mRNA	1983566	1985563	.	-	.	ID=Os03t0135700-01;Name=Os03t0135700-01;Locus_id=Os03g0135700;RAP-DB Gene Symbol Synonym(s)=RAI1;RAP-DB Gene Name Synonym(s)=Rac Immunity1;Oryzabase Gene Symbol Synonym(s)=OsRAI1%2C RAI1%2C OsbHLH003%2C bHLH003%2C bHLH3;Oryzabase Gene Name Synonym(s)=Rac Immunity1%2C Rac Immunity 1%2C basic helix-loop-helix protein 003;Note=Basic helix-loop-helix transcription factor%2C Nucleotide-binding site leucine-rich repeat (NLR) protein-mediated resistance to rice blast disease;Transcript_evidence=AK103779;ORF_evidence=Q10S44;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Helix-loop-helix DNA-binding domain superfamily (IPR036638),Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);NIAS_FLcDNA=J033145C17;Manual Curation=May 16%2C 2019;Literature_PMID=30919975,22437844;Oryzabase=10918;Expression=AK103779;TENOR=Os03t0135700-01;KEGG=Os03t0135700-01;Subcellular location=nucleus (GO:0005634) [mainly], cytoplasm (GO:0005737)
Chr03	irgsp1_rep	five_prime_UTR	1985484	1985563	.	-	.	Parent=Os03t0135700-01
Chr03	irgsp1_rep	CDS	1984854	1985483	.	-	0	Parent=Os03t0135700-01
Chr03	irgsp1_rep	CDS	1984535	1984711	.	-	0	Parent=Os03t0135700-01
Chr03	irgsp1_rep	CDS	1984180	1984350	.	-	0	Parent=Os03t0135700-01
Chr03	irgsp1_rep	CDS	1983888	1983974	.	-	0	Parent=Os03t0135700-01
Chr03	irgsp1_rep	three_prime_UTR	1983566	1983887	.	-	.	Parent=Os03t0135700-01
Chr03	irgsp1_rep	mRNA	1983591	1985503	.	-	.	ID=Os03t0135700-02;Name=Os03t0135700-02;Locus_id=Os03g0135700;Oryzabase Gene Symbol Synonym(s)=OsRAI1%2C RAI1%2C OsbHLH003%2C bHLH003%2C bHLH3;Oryzabase Gene Name Synonym(s)=Rac Immunity1%2C Rac Immunity 1%2C basic helix-loop-helix protein 003;Note=Transcriptional activator Rb homolog (Fragment).;Transcript_evidence=AK060029 (DDBJ%2C Best hit);ORF_evidence=F1DK91 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=006-303-F08;Oryzabase=10918;Expression=AK060029;TENOR=Os03t0135700-02;KEGG=Os03t0135700-02
Chr03	irgsp1_rep	five_prime_UTR	1985484	1985503	.	-	.	Parent=Os03t0135700-02
Chr03	irgsp1_rep	CDS	1984854	1985483	.	-	0	Parent=Os03t0135700-02
Chr03	irgsp1_rep	CDS	1984535	1984711	.	-	0	Parent=Os03t0135700-02
Chr03	irgsp1_rep	CDS	1984180	1984350	.	-	0	Parent=Os03t0135700-02
Chr03	irgsp1_rep	CDS	1983888	1983974	.	-	0	Parent=Os03t0135700-02
Chr03	irgsp1_rep	three_prime_UTR	1983591	1983887	.	-	.	Parent=Os03t0135700-02
Chr03	irgsp1_rep	mRNA	1990495	1995980	.	-	.	ID=Os03t0135800-01;Name=Os03t0135800-01;Locus_id=Os03g0135800;Note=Conserved hypothetical protein.;Transcript_evidence=AK072160 (DDBJ%2C Best hit);ORF_evidence=B9FAY5 (UniProt);NIAS_FLcDNA=J013130K19;Expression=AK072160;TENOR=Os03t0135800-01;KEGG=Os03t0135800-01
Chr03	irgsp1_rep	five_prime_UTR	1995614	1995980	.	-	.	Parent=Os03t0135800-01
Chr03	irgsp1_rep	five_prime_UTR	1992633	1993749	.	-	.	Parent=Os03t0135800-01
Chr03	irgsp1_rep	CDS	1992433	1992632	.	-	0	Parent=Os03t0135800-01
Chr03	irgsp1_rep	CDS	1991784	1991853	.	-	1	Parent=Os03t0135800-01
Chr03	irgsp1_rep	three_prime_UTR	1990495	1991783	.	-	.	Parent=Os03t0135800-01
Chr03	irgsp1_rep	mRNA	2003246	2004830	.	+	.	ID=Os03t0136200-01;Name=Os03t0136200-01;Locus_id=Os03g0136200;Oryzabase Gene Symbol Synonym(s)=Ossmt2-1;Oryzabase Gene Name Synonym(s)=sterol methyltransferase 2-1;Note=24-methylenesterol C-methyltransferase 2 (EC 2.1.1.143) (24-sterol C- methyltransferase 2) (Sterol-C-methyltransferase 2).;Transcript_evidence=AK060887 (DDBJ%2C Best hit),AK121681 (DDBJ%2C Best hit);ORF_evidence=O82427 (UniProt);GO=Biological Process: steroid biosynthetic process (GO:0006694),Biological Process: metabolic process (GO:0008152),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Methyltransferase type 11 (IPR013216),Sterol methyltransferase C-terminal (IPR013705);NIAS_FLcDNA=001-035-B06,J033070A11;Oryzabase=13803;Expression=AK060887;TENOR=Os03t0136200-01;KEGG=Os03t0136200-01 (EC:2.1.1.143)
Chr03	irgsp1_rep	five_prime_UTR	2003246	2003341	.	+	.	Parent=Os03t0136200-01
Chr03	irgsp1_rep	CDS	2003342	2004433	.	+	0	Parent=Os03t0136200-01
Chr03	irgsp1_rep	three_prime_UTR	2004434	2004830	.	+	.	Parent=Os03t0136200-01
Chr03	irgsp1_rep	mRNA	2010988	2013532	.	-	.	ID=Os03t0136400-01;Name=Os03t0136400-01;Locus_id=Os03g0136400;CGSNL Gene Symbol=PT7;CGSNL Gene Name=PHOSPHATE TRANSPORTER 7;Oryzabase Gene Symbol Synonym(s)=OsPT7%2C PHT1-7%2C OsPht1%3B7;Oryzabase Gene Name Synonym(s)=Probable inorganic phosphate transporter 1-7;Note=Similar to Inorganic phosphate transporter 1.;Transcript_evidence=AK107027 (DDBJ%2C Best hit),AK121484 (DDBJ%2C Best hit);ORF_evidence=Q84VI6 (UniProt);GO=Biological Process: phosphate ion transport (GO:0006817),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: inorganic phosphate transmembrane transporter activity (GO:0005315),Molecular Function: transmembrane transporter activity (GO:0022857);InterPro=Phosphate permease (IPR004738),General substrate transporter (IPR005828),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=002-121-A08,J023149P03;Oryzabase=8222;Expression=AK107027;TENOR=Os03t0136400-01;KEGG=Os03t0136400-01
Chr03	irgsp1_rep	five_prime_UTR	2013430	2013532	.	-	.	Parent=Os03t0136400-01
Chr03	irgsp1_rep	CDS	2011849	2013429	.	-	0	Parent=Os03t0136400-01
Chr03	irgsp1_rep	three_prime_UTR	2010988	2011848	.	-	.	Parent=Os03t0136400-01
Chr03	irgsp1_rep	mRNA	2011852	2013468	.	+	.	ID=Os03t0136450-00;Name=Os03t0136450-00;Locus_id=Os03g0136450;Note=Hypothetical gene.;Transcript_evidence=BT086156 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0136450-00;KEGG=Os03t0136450-00
Chr03	irgsp1_rep	five_prime_UTR	2011852	2012143	.	+	.	Parent=Os03t0136450-00
Chr03	irgsp1_rep	CDS	2012144	2012185	.	+	0	Parent=Os03t0136450-00
Chr03	irgsp1_rep	CDS	2012476	2013468	.	+	0	Parent=Os03t0136450-00
Chr03	irgsp1_rep	mRNA	2014048	2014743	.	+	.	ID=Os03t0136500-01;Name=Os03t0136500-01;Locus_id=Os03g0136500;Note=Similar to protein-methionine-s-oxide reductase.;Transcript_evidence=AK107476 (DDBJ%2C Best hit);ORF_evidence=XP_002884077.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peptide-methionine-(S)-S-oxide reductase activity (GO:0008113);InterPro=Methionine sulphoxide reductase B (IPR002579);NIAS_FLcDNA=002-129-B09;TENOR=Os03t0136500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	2014048	2014195	.	+	.	Parent=Os03t0136500-01
Chr03	irgsp1_rep	CDS	2014196	2014612	.	+	0	Parent=Os03t0136500-01
Chr03	irgsp1_rep	three_prime_UTR	2014613	2014743	.	+	.	Parent=Os03t0136500-01
Chr03	irgsp1_rep	mRNA	2014957	2015602	.	+	.	ID=Os03t0136600-01;Name=Os03t0136600-01;Locus_id=Os03g0136600;Note=Complex 1 LYR protein family protein.;Transcript_evidence=AK062705 (DDBJ%2C Best hit);ORF_evidence=XP_002889054.1 (RefSeq);InterPro=Complex 1 LYR protein (IPR008011);NIAS_FLcDNA=001-106-B07;Expression=AK062705;TENOR=Os03t0136600-01;KEGG=Os03t0136600-01
Chr03	irgsp1_rep	five_prime_UTR	2014957	2014960	.	+	.	Parent=Os03t0136600-01
Chr03	irgsp1_rep	CDS	2014961	2015440	.	+	0	Parent=Os03t0136600-01
Chr03	irgsp1_rep	three_prime_UTR	2015441	2015602	.	+	.	Parent=Os03t0136600-01
Chr03	irgsp1_rep	mRNA	2015648	2016273	.	-	.	ID=Os03t0136700-01;Name=Os03t0136700-01;Locus_id=Os03g0136700;Note=Similar to pentatricopeptide (PPR) repeat-containing protein.;Transcript_evidence=AK059547 (DDBJ%2C Best hit);ORF_evidence=NP_195239.1 (RefSeq);NIAS_FLcDNA=001-029-F06;TENOR=Os03t0136700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	2016272	2016273	.	-	.	Parent=Os03t0136700-01
Chr03	irgsp1_rep	CDS	2015978	2016271	.	-	0	Parent=Os03t0136700-01
Chr03	irgsp1_rep	three_prime_UTR	2015648	2015977	.	-	.	Parent=Os03t0136700-01
Chr03	irgsp1_rep	mRNA	2018736	2021964	.	-	.	ID=Os03t0136800-01;Name=Os03t0136800-01;Locus_id=Os03g0136800;Oryzabase Gene Symbol Synonym(s)=OsDjC24;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C24;Note=Heat shock protein DnaJ%2C N-terminal domain containing protein.;Transcript_evidence=AK068822 (DDBJ%2C Best hit);ORF_evidence=NP_001150437.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: heat shock protein binding (GO:0031072);InterPro=RNA recognition motif domain (IPR000504),Heat shock protein DnaJ%2C N-terminal (IPR001623),Nucleotide-binding%2C alpha-beta plait (IPR012677),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=J013168H14;Oryzabase=12181;Expression=AK068822;TENOR=Os03t0136800-01;KEGG=Os03t0136800-01
Chr03	irgsp1_rep	five_prime_UTR	2021920	2021964	.	-	.	Parent=Os03t0136800-01
Chr03	irgsp1_rep	CDS	2021446	2021919	.	-	0	Parent=Os03t0136800-01
Chr03	irgsp1_rep	CDS	2020491	2020697	.	-	0	Parent=Os03t0136800-01
Chr03	irgsp1_rep	CDS	2019299	2019481	.	-	0	Parent=Os03t0136800-01
Chr03	irgsp1_rep	CDS	2019013	2019039	.	-	0	Parent=Os03t0136800-01
Chr03	irgsp1_rep	three_prime_UTR	2018736	2019012	.	-	.	Parent=Os03t0136800-01
Chr03	irgsp1_rep	mRNA	2026831	2033506	.	-	.	ID=Os03t0136900-01;Name=Os03t0136900-01;Locus_id=Os03g0136900;RAP-DB Gene Symbol Synonym(s)=OsACO1;RAP-DB Gene Name Synonym(s)=aconitase 1;Note=Aconitase%2C Regulation of iron deficiency response;Transcript_evidence=AK067183;ORF_evidence=Q10S34;InterPro=Aconitase%2C iron-sulfur domain (IPR036008),Aconitase/3-isopropylmalate dehydratase large subunit%2C alpha/beta/alpha%2C subdomain 1/3 (IPR015931),Aconitase/3-isopropylmalate dehydratase%2C swivel (IPR015928),Aconitase/Iron-responsive element-binding protein 2 (IPR006249),Aconitase/3-isopropylmalate dehydratase large subunit%2C alpha/beta/alpha domain (IPR001030),Aconitase A/isopropylmalate dehydratase small subunit%2C swivel domain (IPR000573),Aconitase family%2C 4Fe-4S cluster binding site (IPR018136);NIAS_FLcDNA=J013095L01;Manual Curation=September 24%2C 2020;Literature_PMID=32909184;Expression=AK067183;TENOR=Os03t0136900-01;KEGG=Os03t0136900-01 (EC:4.2.1.3);Subcellular location=cytosol (GO:0005829) [mainly]
Chr03	irgsp1_rep	five_prime_UTR	2033480	2033506	.	-	.	Parent=Os03t0136900-01
Chr03	irgsp1_rep	CDS	2033215	2033479	.	-	0	Parent=Os03t0136900-01
Chr03	irgsp1_rep	CDS	2032991	2033098	.	-	2	Parent=Os03t0136900-01
Chr03	irgsp1_rep	CDS	2032444	2032604	.	-	2	Parent=Os03t0136900-01
Chr03	irgsp1_rep	CDS	2031824	2031916	.	-	0	Parent=Os03t0136900-01
Chr03	irgsp1_rep	CDS	2031310	2031495	.	-	0	Parent=Os03t0136900-01
Chr03	irgsp1_rep	CDS	2031052	2031213	.	-	0	Parent=Os03t0136900-01
Chr03	irgsp1_rep	CDS	2030539	2030683	.	-	0	Parent=Os03t0136900-01
Chr03	irgsp1_rep	CDS	2030322	2030464	.	-	2	Parent=Os03t0136900-01
Chr03	irgsp1_rep	CDS	2030189	2030245	.	-	0	Parent=Os03t0136900-01
Chr03	irgsp1_rep	CDS	2030028	2030107	.	-	0	Parent=Os03t0136900-01
Chr03	irgsp1_rep	CDS	2029874	2029949	.	-	1	Parent=Os03t0136900-01
Chr03	irgsp1_rep	CDS	2029383	2029568	.	-	0	Parent=Os03t0136900-01
Chr03	irgsp1_rep	CDS	2029043	2029110	.	-	0	Parent=Os03t0136900-01
Chr03	irgsp1_rep	CDS	2028847	2028965	.	-	1	Parent=Os03t0136900-01
Chr03	irgsp1_rep	CDS	2028648	2028769	.	-	2	Parent=Os03t0136900-01
Chr03	irgsp1_rep	CDS	2028357	2028455	.	-	0	Parent=Os03t0136900-01
Chr03	irgsp1_rep	CDS	2027765	2028244	.	-	0	Parent=Os03t0136900-01
Chr03	irgsp1_rep	CDS	2027559	2027657	.	-	0	Parent=Os03t0136900-01
Chr03	irgsp1_rep	CDS	2027235	2027477	.	-	0	Parent=Os03t0136900-01
Chr03	irgsp1_rep	CDS	2027073	2027141	.	-	0	Parent=Os03t0136900-01
Chr03	irgsp1_rep	three_prime_UTR	2026831	2027072	.	-	.	Parent=Os03t0136900-01
Chr03	irgsp1_rep	mRNA	2026817	2028395	.	-	.	ID=Os03t0136900-02;Name=Os03t0136900-02;Locus_id=Os03g0136900;Note=Similar to Aconitate hydratase 2%2C mitochondrial.;Transcript_evidence=AK061677 (DDBJ%2C Best hit);ORF_evidence=Q9SIB9 (UniProt);GO=Biological Process: metabolic process (GO:0008152);InterPro=Aconitase A/isopropylmalate dehydratase small subunit%2C swivel (IPR000573),Aconitase/3-isopropylmalate dehydratase large subunit%2C alpha/beta/alpha (IPR001030),Aconitase/3-isopropylmalate dehydratase%2C swivel (IPR015928),Aconitase/Iron regulatory protein 2/2-methylisocitrate dehydratase (IPR015934),Aconitase/isopropylmalate dehydratase (IPR015937);NIAS_FLcDNA=001-036-H07;Expression=AK061677;TENOR=Os03t0136900-02;KEGG=Os03t0136900-02 (EC:4.2.1.3)
Chr03	irgsp1_rep	CDS	2028357	2028395	.	-	0	Parent=Os03t0136900-02
Chr03	irgsp1_rep	CDS	2027765	2028244	.	-	0	Parent=Os03t0136900-02
Chr03	irgsp1_rep	CDS	2027559	2027657	.	-	0	Parent=Os03t0136900-02
Chr03	irgsp1_rep	CDS	2027235	2027477	.	-	0	Parent=Os03t0136900-02
Chr03	irgsp1_rep	CDS	2027073	2027141	.	-	0	Parent=Os03t0136900-02
Chr03	irgsp1_rep	three_prime_UTR	2026817	2027072	.	-	.	Parent=Os03t0136900-02
Chr03	irgsp1_rep	mRNA	2027864	2028771	.	+	.	ID=Os03t0136975-00;Name=Os03t0136975-00;Locus_id=Os03g0136975;Note=Non-protein coding transcript.;Transcript_evidence=EU944133 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0136975-00
Chr03	irgsp1_rep	exon	2027864	2028112	.	+	.	Parent=Os03t0136975-00
Chr03	irgsp1_rep	exon	2028350	2028504	.	+	.	Parent=Os03t0136975-00
Chr03	irgsp1_rep	exon	2028605	2028771	.	+	.	Parent=Os03t0136975-00
Chr03	irgsp1_rep	mRNA	2055495	2056386	.	-	.	ID=Os03t0137050-00;Name=Os03t0137050-00;Locus_id=Os03g0137050;Note=Non-protein coding transcript.;Transcript_evidence=BT086855 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0137050-00
Chr03	irgsp1_rep	exon	2056189	2056386	.	-	.	Parent=Os03t0137050-00
Chr03	irgsp1_rep	exon	2055495	2055935	.	-	.	Parent=Os03t0137050-00
Chr03	irgsp1_rep	mRNA	2055599	2058939	.	+	.	ID=Os03t0137200-01;Name=Os03t0137200-01;Locus_id=Os03g0137200;Oryzabase Gene Symbol Synonym(s)=OsPP2C28%2C PP2C28%2C OsPP43;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C28%2C protein phosphatase 2C 28%2C protein phosphatase 43;Note=Protein phosphatase 2C domain containing protein.;Transcript_evidence=AK065303 (DDBJ%2C Best hit);ORF_evidence=B6T5D8 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J013002N24;Oryzabase=17904;Expression=AK065303;TENOR=Os03t0137200-01;KEGG=Os03t0137200-01
Chr03	irgsp1_rep	five_prime_UTR	2055599	2055953	.	+	.	Parent=Os03t0137200-01
Chr03	irgsp1_rep	five_prime_UTR	2056228	2056336	.	+	.	Parent=Os03t0137200-01
Chr03	irgsp1_rep	CDS	2056337	2056658	.	+	0	Parent=Os03t0137200-01
Chr03	irgsp1_rep	CDS	2056972	2057339	.	+	2	Parent=Os03t0137200-01
Chr03	irgsp1_rep	CDS	2057937	2058173	.	+	0	Parent=Os03t0137200-01
Chr03	irgsp1_rep	CDS	2058353	2058625	.	+	0	Parent=Os03t0137200-01
Chr03	irgsp1_rep	three_prime_UTR	2058626	2058939	.	+	.	Parent=Os03t0137200-01
Chr03	irgsp1_rep	mRNA	2057243	2058910	.	+	.	ID=Os03t0137200-02;Name=Os03t0137200-02;Locus_id=Os03g0137200;Oryzabase Gene Symbol Synonym(s)=OsPP2C28%2C PP2C28%2C OsPP43;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C28%2C protein phosphatase 2C 28%2C protein phosphatase 43;Note=Similar to Protein phosphatase 2C.;Transcript_evidence=AK061618 (DDBJ%2C Best hit);ORF_evidence=B6T5D8 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=001-033-D01;Oryzabase=17904;Expression=AK061618;TENOR=Os03t0137200-02;KEGG=Os03t0137200-02
Chr03	irgsp1_rep	five_prime_UTR	2057243	2057243	.	+	.	Parent=Os03t0137200-02
Chr03	irgsp1_rep	CDS	2057244	2057339	.	+	0	Parent=Os03t0137200-02
Chr03	irgsp1_rep	CDS	2057937	2058173	.	+	0	Parent=Os03t0137200-02
Chr03	irgsp1_rep	CDS	2058353	2058625	.	+	0	Parent=Os03t0137200-02
Chr03	irgsp1_rep	three_prime_UTR	2058626	2058910	.	+	.	Parent=Os03t0137200-02
Chr03	irgsp1_rep	mRNA	2058349	2058633	.	-	.	ID=Os03t0137250-00;Name=Os03t0137250-00;Locus_id=Os03g0137250;Note=Non-protein coding transcript.;Transcript_evidence=EU943254 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0137250-00
Chr03	irgsp1_rep	exon	2058349	2058633	.	-	.	Parent=Os03t0137250-00
Chr03	irgsp1_rep	mRNA	2059793	2062965	.	-	.	ID=Os03t0137300-01;Name=Os03t0137300-01;Locus_id=Os03g0137300;Note=Protein of unknown function DUF3353 domain containing protein.;Transcript_evidence=AK120282 (DDBJ%2C Best hit);ORF_evidence=Q10S29 (UniProt);InterPro=Protein of unknown function DUF3353 (IPR021788);NIAS_FLcDNA=J013049K09;Expression=AK120282;TENOR=Os03t0137300-01;KEGG=Os03t0137300-01
Chr03	irgsp1_rep	CDS	2062879	2062965	.	-	0	Parent=Os03t0137300-01
Chr03	irgsp1_rep	CDS	2061654	2062014	.	-	0	Parent=Os03t0137300-01
Chr03	irgsp1_rep	CDS	2059991	2060166	.	-	2	Parent=Os03t0137300-01
Chr03	irgsp1_rep	three_prime_UTR	2059793	2059990	.	-	.	Parent=Os03t0137300-01
Chr03	irgsp1_rep	mRNA	2059823	2062999	.	+	.	ID=Os03t0137350-00;Name=Os03t0137350-00;Locus_id=Os03g0137350;Note=Non-protein coding transcript.;Transcript_evidence=BT017631 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0137350-00
Chr03	irgsp1_rep	exon	2059823	2060147	.	+	.	Parent=Os03t0137350-00
Chr03	irgsp1_rep	exon	2061637	2061996	.	+	.	Parent=Os03t0137350-00
Chr03	irgsp1_rep	exon	2062856	2062999	.	+	.	Parent=Os03t0137350-00
Chr03	irgsp1_rep	mRNA	2065049	2067737	.	+	.	ID=Os03t0137400-01;Name=Os03t0137400-01;Locus_id=Os03g0137400;CGSNL Gene Symbol=OSCA4.1;CGSNL Gene Name=HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 4.1;Oryzabase Gene Symbol Synonym(s)=OsOSCA4.1%2C OsIOSCA4.1;Oryzabase Gene Name Synonym(s)=Hyperosmolality-gated calcium-permeable channel 4.1;Note=Protein of unknown function DUF221 domain containing protein.;Transcript_evidence=AK101118 (DDBJ%2C Best hit);ORF_evidence=B8AMU4 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Domain of unknown function DUF221 (IPR003864);NIAS_FLcDNA=J033025H22;Oryzabase=19659;Expression=AK101118;TENOR=Os03t0137400-01;KEGG=Os03t0137400-01
Chr03	irgsp1_rep	five_prime_UTR	2065049	2065130	.	+	.	Parent=Os03t0137400-01
Chr03	irgsp1_rep	CDS	2065131	2067509	.	+	0	Parent=Os03t0137400-01
Chr03	irgsp1_rep	three_prime_UTR	2067510	2067737	.	+	.	Parent=Os03t0137400-01
Chr03	irgsp1_rep	mRNA	2065101	2067726	.	+	.	ID=Os03t0137400-02;Name=Os03t0137400-02;Locus_id=Os03g0137400;CGSNL Gene Symbol=OSCA4.1;CGSNL Gene Name=HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 4.1;Oryzabase Gene Symbol Synonym(s)=OsOSCA4.1%2C OsIOSCA4.1;Oryzabase Gene Name Synonym(s)=Hyperosmolality-gated calcium-permeable channel 4.1;Note=Protein of unknown function DUF221 domain containing protein.;Transcript_evidence=AK072057 (DDBJ%2C Best hit);ORF_evidence=B8AMU4 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Domain of unknown function DUF221 (IPR003864);NIAS_FLcDNA=J013108G06;Oryzabase=19659;Expression=AK072057;TENOR=Os03t0137400-02;KEGG=Os03t0137400-02
Chr03	irgsp1_rep	five_prime_UTR	2065101	2065130	.	+	.	Parent=Os03t0137400-02
Chr03	irgsp1_rep	CDS	2065131	2067509	.	+	0	Parent=Os03t0137400-02
Chr03	irgsp1_rep	three_prime_UTR	2067510	2067726	.	+	.	Parent=Os03t0137400-02
Chr03	irgsp1_rep	mRNA	2069458	2073230	.	+	.	ID=Os03t0137500-01;Name=Os03t0137500-01;Locus_id=Os03g0137500;Oryzabase Gene Symbol Synonym(s)=OSVDAC6%2C osvdac6%2C OsVDAC6%2C VDAC6;Oryzabase Gene Name Synonym(s)=voltage-dependent anion channel 6%2C voltage-dependent anion-selective channel 6;Note=Similar to VDAC3.1.;Transcript_evidence=AK100231 (DDBJ%2C Best hit);ORF_evidence=NP_001149101.1 (RefSeq);GO=Biological Process: anion transport (GO:0006820),Biological Process: regulation of anion transport (GO:0044070),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial outer membrane (GO:0005741),Molecular Function: voltage-gated anion channel activity (GO:0008308);InterPro=Porin%2C eukaryotic type (IPR001925);NIAS_FLcDNA=J023049J19;Oryzabase=20303;Expression=AK100231;TENOR=Os03t0137500-01;KEGG=Os03t0137500-01
Chr03	irgsp1_rep	five_prime_UTR	2069458	2069603	.	+	.	Parent=Os03t0137500-01
Chr03	irgsp1_rep	five_prime_UTR	2069863	2069893	.	+	.	Parent=Os03t0137500-01
Chr03	irgsp1_rep	CDS	2069894	2069940	.	+	0	Parent=Os03t0137500-01
Chr03	irgsp1_rep	CDS	2070596	2070665	.	+	1	Parent=Os03t0137500-01
Chr03	irgsp1_rep	CDS	2070755	2070865	.	+	0	Parent=Os03t0137500-01
Chr03	irgsp1_rep	CDS	2071377	2071463	.	+	0	Parent=Os03t0137500-01
Chr03	irgsp1_rep	CDS	2071689	2071897	.	+	0	Parent=Os03t0137500-01
Chr03	irgsp1_rep	CDS	2072328	2072634	.	+	1	Parent=Os03t0137500-01
Chr03	irgsp1_rep	three_prime_UTR	2072635	2073230	.	+	.	Parent=Os03t0137500-01
Chr03	irgsp1_rep	mRNA	2069488	2070196	.	+	.	ID=Os03t0137500-02;Name=Os03t0137500-02;Locus_id=Os03g0137500;Oryzabase Gene Symbol Synonym(s)=OSVDAC6%2C osvdac6%2C OsVDAC6%2C VDAC6;Oryzabase Gene Name Synonym(s)=voltage-dependent anion channel 6%2C voltage-dependent anion-selective channel 6;Note=Hypothetical conserved gene.;Transcript_evidence=AK107864 (DDBJ%2C Best hit);ORF_evidence=B9FAZ1 (UniProt);NIAS_FLcDNA=002-134-B12;Oryzabase=20303;Expression=AK107864;TENOR=Os03t0137500-02;KEGG=Os03t0137500-02
Chr03	irgsp1_rep	five_prime_UTR	2069488	2069489	.	+	.	Parent=Os03t0137500-02
Chr03	irgsp1_rep	CDS	2069490	2069603	.	+	0	Parent=Os03t0137500-02
Chr03	irgsp1_rep	CDS	2069863	2070036	.	+	0	Parent=Os03t0137500-02
Chr03	irgsp1_rep	three_prime_UTR	2070037	2070196	.	+	.	Parent=Os03t0137500-02
Chr03	irgsp1_rep	mRNA	2069503	2072912	.	+	.	ID=Os03t0137500-03;Name=Os03t0137500-03;Locus_id=Os03g0137500;Oryzabase Gene Symbol Synonym(s)=OSVDAC6%2C osvdac6%2C OsVDAC6%2C VDAC6;Oryzabase Gene Name Synonym(s)=voltage-dependent anion channel 6%2C voltage-dependent anion-selective channel 6;Note=Similar to VDAC3.1.;Transcript_evidence=AK073584 (DDBJ%2C Best hit),AK060148 (DDBJ%2C Best hit);ORF_evidence=NP_001149101.1 (RefSeq);GO=Biological Process: anion transport (GO:0006820),Biological Process: regulation of anion transport (GO:0044070),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial outer membrane (GO:0005741),Molecular Function: voltage-gated anion channel activity (GO:0008308);InterPro=Porin%2C eukaryotic type (IPR001925);NIAS_FLcDNA=J033050N14,006-310-C01;Oryzabase=20303;TENOR=Os03t0137500-03
Chr03	irgsp1_rep	five_prime_UTR	2069503	2069603	.	+	.	Parent=Os03t0137500-03
Chr03	irgsp1_rep	five_prime_UTR	2069863	2069893	.	+	.	Parent=Os03t0137500-03
Chr03	irgsp1_rep	CDS	2069894	2069940	.	+	0	Parent=Os03t0137500-03
Chr03	irgsp1_rep	CDS	2070596	2070665	.	+	1	Parent=Os03t0137500-03
Chr03	irgsp1_rep	CDS	2070755	2070865	.	+	0	Parent=Os03t0137500-03
Chr03	irgsp1_rep	CDS	2071377	2071463	.	+	0	Parent=Os03t0137500-03
Chr03	irgsp1_rep	CDS	2071689	2071897	.	+	0	Parent=Os03t0137500-03
Chr03	irgsp1_rep	CDS	2072328	2072634	.	+	1	Parent=Os03t0137500-03
Chr03	irgsp1_rep	three_prime_UTR	2072635	2072912	.	+	.	Parent=Os03t0137500-03
Chr03	irgsp1_rep	mRNA	2073420	2074942	.	+	.	ID=Os03t0137600-01;Name=Os03t0137600-01;Locus_id=Os03g0137600;Note=Conserved hypothetical protein.;Transcript_evidence=AK061189 (DDBJ%2C Best hit);ORF_evidence=B9FAZ2 (UniProt);NIAS_FLcDNA=006-209-F01;Expression=AK061189;TENOR=Os03t0137600-01;KEGG=Os03t0137600-01
Chr03	irgsp1_rep	five_prime_UTR	2073420	2073584	.	+	.	Parent=Os03t0137600-01
Chr03	irgsp1_rep	CDS	2073585	2073965	.	+	0	Parent=Os03t0137600-01
Chr03	irgsp1_rep	CDS	2074045	2074116	.	+	0	Parent=Os03t0137600-01
Chr03	irgsp1_rep	CDS	2074201	2074325	.	+	0	Parent=Os03t0137600-01
Chr03	irgsp1_rep	CDS	2074453	2074525	.	+	1	Parent=Os03t0137600-01
Chr03	irgsp1_rep	CDS	2074630	2074734	.	+	0	Parent=Os03t0137600-01
Chr03	irgsp1_rep	three_prime_UTR	2074735	2074942	.	+	.	Parent=Os03t0137600-01
Chr03	irgsp1_rep	mRNA	2073482	2074942	.	+	.	ID=Os03t0137600-02;Name=Os03t0137600-02;Locus_id=Os03g0137600;Note=Conserved hypothetical protein.;Transcript_evidence=AK099311 (DDBJ%2C Best hit),AK058690 (DDBJ%2C Best hit),AK104115 (DDBJ%2C Best hit);ORF_evidence=B9FAZ2 (UniProt);NIAS_FLcDNA=J023149H01,001-019-B03,006-202-H12;TENOR=Os03t0137600-02
Chr03	irgsp1_rep	five_prime_UTR	2073482	2073584	.	+	.	Parent=Os03t0137600-02
Chr03	irgsp1_rep	CDS	2073585	2073965	.	+	0	Parent=Os03t0137600-02
Chr03	irgsp1_rep	CDS	2074045	2074116	.	+	0	Parent=Os03t0137600-02
Chr03	irgsp1_rep	CDS	2074201	2074325	.	+	0	Parent=Os03t0137600-02
Chr03	irgsp1_rep	CDS	2074453	2074525	.	+	1	Parent=Os03t0137600-02
Chr03	irgsp1_rep	CDS	2074630	2074734	.	+	0	Parent=Os03t0137600-02
Chr03	irgsp1_rep	three_prime_UTR	2074735	2074942	.	+	.	Parent=Os03t0137600-02
Chr03	irgsp1_rep	mRNA	2075322	2077636	.	-	.	ID=Os03t0137700-01;Name=Os03t0137700-01;Locus_id=Os03g0137700;Oryzabase Gene Symbol Synonym(s)=OsMRS2-5;Oryzabase Gene Name Synonym(s)=MRS2/MGT family member 5;Note=Mg2+ transporter protein%2C CorA-like domain containing protein.;Transcript_evidence=AK069498 (DDBJ%2C Best hit);ORF_evidence=Q10S25 (UniProt);NIAS_FLcDNA=J023022F21;Oryzabase=14376;Expression=AK069498;TENOR=Os03t0137700-01;KEGG=Os03t0137700-01
Chr03	irgsp1_rep	five_prime_UTR	2077427	2077636	.	-	.	Parent=Os03t0137700-01
Chr03	irgsp1_rep	CDS	2077102	2077426	.	-	0	Parent=Os03t0137700-01
Chr03	irgsp1_rep	CDS	2076555	2076991	.	-	2	Parent=Os03t0137700-01
Chr03	irgsp1_rep	CDS	2075975	2076235	.	-	0	Parent=Os03t0137700-01
Chr03	irgsp1_rep	CDS	2075567	2075851	.	-	0	Parent=Os03t0137700-01
Chr03	irgsp1_rep	three_prime_UTR	2075322	2075566	.	-	.	Parent=Os03t0137700-01
Chr03	irgsp1_rep	mRNA	2075564	2077454	.	+	.	ID=Os03t0137750-00;Name=Os03t0137750-00;Locus_id=Os03g0137750;Note=Hypothetical protein.;Transcript_evidence=tplb0043b08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0137750-00
Chr03	irgsp1_rep	five_prime_UTR	2075564	2075853	.	+	.	Parent=Os03t0137750-00
Chr03	irgsp1_rep	five_prime_UTR	2075979	2076233	.	+	.	Parent=Os03t0137750-00
Chr03	irgsp1_rep	five_prime_UTR	2076553	2076989	.	+	.	Parent=Os03t0137750-00
Chr03	irgsp1_rep	five_prime_UTR	2077100	2077106	.	+	.	Parent=Os03t0137750-00
Chr03	irgsp1_rep	CDS	2077107	2077454	.	+	0	Parent=Os03t0137750-00
Chr03	irgsp1_rep	mRNA	2088673	2091654	.	+	.	ID=Os03t0137800-01;Name=Os03t0137800-01;Locus_id=Os03g0137800;CGSNL Gene Symbol=KRP5;CGSNL Gene Name=KIP-RELATED PROTEIN 5;Oryzabase Gene Symbol Synonym(s)=OsiICK5%2C Orysa%3BKRP5%2C OrysaICK5%2C Orysa%3BICK5%2C OsKRP5%2C OsICK5%2C ICK5;Oryzabase Gene Name Synonym(s)=Cyclin-dependent kinase inhibitor 5%2C KIP-related protein 5%2C inhibitor of cyclin-dependent kinase 5;Note=Cyclin-dependent kinase inhibitor family protein.;Transcript_evidence=AK064723 (DDBJ%2C Best hit);ORF_evidence=Q283L0 (UniProt);GO=Biological Process: cell cycle arrest (GO:0007050),Cellular Component: nucleus (GO:0005634),Molecular Function: cyclin-dependent protein kinase inhibitor activity (GO:0004861);InterPro=Cyclin-dependent kinase inhibitor (IPR003175),Cyclin-dependent kinase inhibitor%2C plant (IPR016701);NIAS_FLcDNA=002-118-F09;Oryzabase=12358;Expression=AK064723;TENOR=Os03t0137800-01;KEGG=Os03t0137800-01
Chr03	irgsp1_rep	five_prime_UTR	2088673	2088759	.	+	.	Parent=Os03t0137800-01
Chr03	irgsp1_rep	CDS	2088760	2089151	.	+	0	Parent=Os03t0137800-01
Chr03	irgsp1_rep	CDS	2090950	2091153	.	+	1	Parent=Os03t0137800-01
Chr03	irgsp1_rep	CDS	2091293	2091362	.	+	1	Parent=Os03t0137800-01
Chr03	irgsp1_rep	three_prime_UTR	2091363	2091654	.	+	.	Parent=Os03t0137800-01
Chr03	irgsp1_rep	mRNA	2097607	2101999	.	+	.	ID=Os03t0138000-01;Name=Os03t0138000-01;Locus_id=Os03g0138000;Note=Conserved hypothetical protein.;Transcript_evidence=AK069986 (DDBJ%2C Best hit);ORF_evidence=B9FAZ3 (UniProt);NIAS_FLcDNA=J023039B08;TENOR=Os03t0138000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	2097607	2097921	.	+	.	Parent=Os03t0138000-01
Chr03	irgsp1_rep	five_prime_UTR	2098471	2098550	.	+	.	Parent=Os03t0138000-01
Chr03	irgsp1_rep	CDS	2098551	2098716	.	+	0	Parent=Os03t0138000-01
Chr03	irgsp1_rep	CDS	2099299	2099348	.	+	2	Parent=Os03t0138000-01
Chr03	irgsp1_rep	three_prime_UTR	2099349	2099548	.	+	.	Parent=Os03t0138000-01
Chr03	irgsp1_rep	three_prime_UTR	2099645	2100861	.	+	.	Parent=Os03t0138000-01
Chr03	irgsp1_rep	three_prime_UTR	2101146	2101296	.	+	.	Parent=Os03t0138000-01
Chr03	irgsp1_rep	three_prime_UTR	2101460	2101999	.	+	.	Parent=Os03t0138000-01
Chr03	irgsp1_rep	mRNA	2103191	2112148	.	-	.	ID=Os03t0138100-01;Name=Os03t0138100-01;Locus_id=Os03g0138100;Note=Similar to RNA recognition motif family protein%2C expressed.;Transcript_evidence=AK066407 (DDBJ%2C Best hit);ORF_evidence=Q10S21 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013063J08;TENOR=Os03t0138100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	2112002	2112148	.	-	.	Parent=Os03t0138100-01
Chr03	irgsp1_rep	five_prime_UTR	2110838	2110943	.	-	.	Parent=Os03t0138100-01
Chr03	irgsp1_rep	CDS	2109287	2110837	.	-	0	Parent=Os03t0138100-01
Chr03	irgsp1_rep	CDS	2109061	2109198	.	-	0	Parent=Os03t0138100-01
Chr03	irgsp1_rep	CDS	2107335	2107537	.	-	0	Parent=Os03t0138100-01
Chr03	irgsp1_rep	CDS	2105761	2105800	.	-	1	Parent=Os03t0138100-01
Chr03	irgsp1_rep	three_prime_UTR	2105729	2105760	.	-	.	Parent=Os03t0138100-01
Chr03	irgsp1_rep	three_prime_UTR	2105447	2105488	.	-	.	Parent=Os03t0138100-01
Chr03	irgsp1_rep	three_prime_UTR	2105225	2105314	.	-	.	Parent=Os03t0138100-01
Chr03	irgsp1_rep	three_prime_UTR	2104987	2105094	.	-	.	Parent=Os03t0138100-01
Chr03	irgsp1_rep	three_prime_UTR	2104811	2104903	.	-	.	Parent=Os03t0138100-01
Chr03	irgsp1_rep	three_prime_UTR	2104473	2104552	.	-	.	Parent=Os03t0138100-01
Chr03	irgsp1_rep	three_prime_UTR	2103191	2104394	.	-	.	Parent=Os03t0138100-01
Chr03	irgsp1_rep	mRNA	2115174	2116896	.	+	.	ID=Os03t0138200-01;Name=Os03t0138200-01;Locus_id=Os03g0138200;CGSNL Gene Symbol=CYP96B6;CGSNL Gene Name=P-450 96B6;Oryzabase Gene Symbol Synonym(s)=OsCYP96B6;Oryzabase Gene Name Synonym(s)=CytoChrome P450 96B6;Note=CytoChrome P450 family protein.;Transcript_evidence=AK105857 (DDBJ%2C Best hit);ORF_evidence=A3ADX2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=001-203-H07;Oryzabase=19312;Expression=AK105857;TENOR=Os03t0138200-01;KEGG=Os03t0138200-01
Chr03	irgsp1_rep	five_prime_UTR	2115174	2115227	.	+	.	Parent=Os03t0138200-01
Chr03	irgsp1_rep	CDS	2115228	2116796	.	+	0	Parent=Os03t0138200-01
Chr03	irgsp1_rep	three_prime_UTR	2116797	2116896	.	+	.	Parent=Os03t0138200-01
Chr03	irgsp1_rep	mRNA	2118865	2123085	.	+	.	ID=Os03t0138400-01;Name=Os03t0138400-01;Locus_id=Os03g0138400;Note=Conserved hypothetical protein.;Transcript_evidence=AK241963 (DDBJ%2C Best hit);ORF_evidence=NP_001173255.1 (RefSeq);NIAS_FLcDNA=J075094F14;TENOR=Os03t0138400-01;KEGG=Os03t0138400-01
Chr03	irgsp1_rep	five_prime_UTR	2118865	2119138	.	+	.	Parent=Os03t0138400-01
Chr03	irgsp1_rep	five_prime_UTR	2119294	2119409	.	+	.	Parent=Os03t0138400-01
Chr03	irgsp1_rep	CDS	2119410	2119678	.	+	0	Parent=Os03t0138400-01
Chr03	irgsp1_rep	CDS	2122815	2122872	.	+	1	Parent=Os03t0138400-01
Chr03	irgsp1_rep	three_prime_UTR	2122873	2123085	.	+	.	Parent=Os03t0138400-01
Chr03	irgsp1_rep	mRNA	2123692	2125645	.	+	.	ID=Os03t0138500-01;Name=Os03t0138500-01;Locus_id=Os03g0138500;Note=Conserved hypothetical protein.;Transcript_evidence=AK102410 (DDBJ%2C Best hit);ORF_evidence=A3ADX4 (UniProt);NIAS_FLcDNA=J033092N11;Expression=AK102410;TENOR=Os03t0138500-01;KEGG=Os03t0138500-01
Chr03	irgsp1_rep	five_prime_UTR	2123692	2123791	.	+	.	Parent=Os03t0138500-01
Chr03	irgsp1_rep	CDS	2123792	2123884	.	+	0	Parent=Os03t0138500-01
Chr03	irgsp1_rep	CDS	2123992	2124095	.	+	0	Parent=Os03t0138500-01
Chr03	irgsp1_rep	CDS	2124219	2125227	.	+	1	Parent=Os03t0138500-01
Chr03	irgsp1_rep	CDS	2125333	2125347	.	+	0	Parent=Os03t0138500-01
Chr03	irgsp1_rep	three_prime_UTR	2125348	2125645	.	+	.	Parent=Os03t0138500-01
Chr03	irgsp1_rep	mRNA	2125787	2129505	.	-	.	ID=Os03t0138600-01;Name=Os03t0138600-01;Locus_id=Os03g0138600;Oryzabase Gene Symbol Synonym(s)=OsSTA89%2C STA89%2C OsDUF810.1%2C DUF810.1;Oryzabase Gene Name Synonym(s)=domains of unknown function 810.1%2C DUF810 family member 1;Note=Hypothetical conserved gene.;Transcript_evidence=AK288194 (DDBJ%2C Best hit);ORF_evidence=B9FAZ4 (UniProt);InterPro=Protein of unknown function DUF810 (IPR008528),Munc13 homology 1 (IPR014770),Mammalian uncoordinated homology 13%2C domain 2 (IPR014772);NIAS_FLcDNA=J090007H07;Oryzabase=19385;TENOR=Os03t0138600-01;KEGG=Os03t0138600-01
Chr03	irgsp1_rep	five_prime_UTR	2129505	2129505	.	-	.	Parent=Os03t0138600-01
Chr03	irgsp1_rep	CDS	2129224	2129504	.	-	0	Parent=Os03t0138600-01
Chr03	irgsp1_rep	CDS	2128883	2129039	.	-	1	Parent=Os03t0138600-01
Chr03	irgsp1_rep	CDS	2127874	2128788	.	-	0	Parent=Os03t0138600-01
Chr03	irgsp1_rep	CDS	2127334	2127801	.	-	0	Parent=Os03t0138600-01
Chr03	irgsp1_rep	CDS	2127070	2127256	.	-	0	Parent=Os03t0138600-01
Chr03	irgsp1_rep	CDS	2125991	2126985	.	-	2	Parent=Os03t0138600-01
Chr03	irgsp1_rep	three_prime_UTR	2125787	2125990	.	-	.	Parent=Os03t0138600-01
Chr03	irgsp1_rep	mRNA	2131982	2136725	.	-	.	ID=Os03t0138700-01;Name=Os03t0138700-01;Locus_id=Os03g0138700;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=TGF-beta receptor%2C type I/II extracellular region family protein.;Transcript_evidence=AK072119 (DDBJ%2C Best hit);ORF_evidence=NP_001147986.1 (RefSeq);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J013123D02;Oryzabase=23645;Expression=AK072119;TENOR=Os03t0138700-01;KEGG=Os03t0138700-01
Chr03	irgsp1_rep	five_prime_UTR	2136618	2136725	.	-	.	Parent=Os03t0138700-01
Chr03	irgsp1_rep	CDS	2136464	2136617	.	-	0	Parent=Os03t0138700-01
Chr03	irgsp1_rep	CDS	2136110	2136327	.	-	2	Parent=Os03t0138700-01
Chr03	irgsp1_rep	CDS	2132289	2133719	.	-	0	Parent=Os03t0138700-01
Chr03	irgsp1_rep	three_prime_UTR	2131982	2132288	.	-	.	Parent=Os03t0138700-01
Chr03	irgsp1_rep	mRNA	2139916	2141093	.	+	.	ID=Os03t0138900-01;Name=Os03t0138900-01;Locus_id=Os03g0138900;Note=Conserved hypothetical protein.;Transcript_evidence=AK103850 (DDBJ%2C Best hit),AK060973 (DDBJ%2C Best hit);ORF_evidence=A2XCA8 (UniProt);NIAS_FLcDNA=J033148L04,006-202-E02;Expression=AK103850;TENOR=Os03t0138900-01;KEGG=Os03t0138900-01
Chr03	irgsp1_rep	five_prime_UTR	2139916	2139970	.	+	.	Parent=Os03t0138900-01
Chr03	irgsp1_rep	CDS	2139971	2140906	.	+	0	Parent=Os03t0138900-01
Chr03	irgsp1_rep	three_prime_UTR	2140907	2141093	.	+	.	Parent=Os03t0138900-01
Chr03	irgsp1_rep	mRNA	2142726	2145398	.	+	.	ID=Os03t0139100-00;Name=Os03t0139100-00;Locus_id=Os03g0139100;Oryzabase Gene Name Synonym(s)=Ribosomal protein L23;Note=Similar to Ribosomal Pr 117 (Fragment).;Transcript_evidence=CU406873 (DDBJ%2C Best hit);ORF_evidence=Q7X9K1 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L14b/L23e (IPR000218),Ribosomal protein L14 conserved site (IPR019972),Ribosomal protein L14 domain (IPR023571);Oryzabase=17667;TENOR=Os03t0139100-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	2142726	2142726	.	+	.	Parent=Os03t0139100-00
Chr03	irgsp1_rep	CDS	2142727	2142763	.	+	0	Parent=Os03t0139100-00
Chr03	irgsp1_rep	CDS	2142891	2143175	.	+	2	Parent=Os03t0139100-00
Chr03	irgsp1_rep	CDS	2145026	2145067	.	+	2	Parent=Os03t0139100-00
Chr03	irgsp1_rep	CDS	2145156	2145238	.	+	2	Parent=Os03t0139100-00
Chr03	irgsp1_rep	three_prime_UTR	2145239	2145398	.	+	.	Parent=Os03t0139100-00
Chr03	irgsp1_rep	mRNA	2145765	2150519	.	-	.	ID=Os03t0139200-01;Name=Os03t0139200-01;Locus_id=Os03g0139200;Note=CytoChrome c region domain containing protein.;Transcript_evidence=AK069718 (DDBJ%2C Best hit);ORF_evidence=B8AMV4 (UniProt);InterPro=Protein of unknown function DUF3527 (IPR021916);NIAS_FLcDNA=J023027F09;Expression=AK069718;TENOR=Os03t0139200-01;KEGG=Os03t0139200-01
Chr03	irgsp1_rep	five_prime_UTR	2149454	2150519	.	-	.	Parent=Os03t0139200-01
Chr03	irgsp1_rep	five_prime_UTR	2147943	2147998	.	-	.	Parent=Os03t0139200-01
Chr03	irgsp1_rep	CDS	2146347	2147942	.	-	0	Parent=Os03t0139200-01
Chr03	irgsp1_rep	CDS	2146087	2146239	.	-	0	Parent=Os03t0139200-01
Chr03	irgsp1_rep	three_prime_UTR	2145765	2146086	.	-	.	Parent=Os03t0139200-01
Chr03	irgsp1_rep	mRNA	2145884	2149675	.	-	.	ID=Os03t0139200-02;Name=Os03t0139200-02;Locus_id=Os03g0139200;Note=CytoChrome c region domain containing protein.;Transcript_evidence=AK067098 (DDBJ%2C Best hit);ORF_evidence=B8AMV4 (UniProt);InterPro=Protein of unknown function DUF3527 (IPR021916);NIAS_FLcDNA=J013098N06;Expression=AK067098;TENOR=Os03t0139200-02;KEGG=Os03t0139200-02
Chr03	irgsp1_rep	five_prime_UTR	2149454	2149675	.	-	.	Parent=Os03t0139200-02
Chr03	irgsp1_rep	five_prime_UTR	2147943	2147998	.	-	.	Parent=Os03t0139200-02
Chr03	irgsp1_rep	CDS	2146347	2147942	.	-	0	Parent=Os03t0139200-02
Chr03	irgsp1_rep	CDS	2146087	2146239	.	-	0	Parent=Os03t0139200-02
Chr03	irgsp1_rep	three_prime_UTR	2145884	2146086	.	-	.	Parent=Os03t0139200-02
Chr03	irgsp1_rep	mRNA	2154645	2155581	.	+	.	ID=Os03t0139400-01;Name=Os03t0139400-01;Locus_id=Os03g0139400;Note=Conserved hypothetical protein.;Transcript_evidence=AK070427 (DDBJ%2C Best hit);ORF_evidence=A2XCB2 (UniProt);NIAS_FLcDNA=J023050D10;Expression=AK070427;TENOR=Os03t0139400-01;KEGG=Os03t0139400-01
Chr03	irgsp1_rep	five_prime_UTR	2154645	2154734	.	+	.	Parent=Os03t0139400-01
Chr03	irgsp1_rep	CDS	2154735	2155499	.	+	0	Parent=Os03t0139400-01
Chr03	irgsp1_rep	three_prime_UTR	2155500	2155581	.	+	.	Parent=Os03t0139400-01
Chr03	irgsp1_rep	mRNA	2159337	2161733	.	-	.	ID=Os03t0139500-01;Name=Os03t0139500-01;Locus_id=Os03g0139500;Oryzabase Gene Symbol Synonym(s)=OsCCT10%2C OsCMF4%2C CCT10%2C CMF4%2C DLN75%2C OsDLN75;Oryzabase Gene Name Synonym(s)=CCT domain-containing gene 10%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 10%2C CCT domain protein 10%2C CCT MOTIF FAMILY (CMF) gene 4%2C DLN repressor 75%2C DLN motif protein 75;Note=Similar to CONSTANS-like protein CO9 (Fragment).;Transcript_evidence=AK071184 (DDBJ%2C Best hit);ORF_evidence=Q10S07 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=CCT domain (IPR010402);NIAS_FLcDNA=J023082N23;Oryzabase=19171;Expression=AK071184;TENOR=Os03t0139500-01;KEGG=Os03t0139500-01
Chr03	irgsp1_rep	five_prime_UTR	2161673	2161733	.	-	.	Parent=Os03t0139500-01
Chr03	irgsp1_rep	CDS	2161649	2161672	.	-	0	Parent=Os03t0139500-01
Chr03	irgsp1_rep	CDS	2160483	2161202	.	-	0	Parent=Os03t0139500-01
Chr03	irgsp1_rep	CDS	2160082	2160270	.	-	0	Parent=Os03t0139500-01
Chr03	irgsp1_rep	CDS	2159880	2160002	.	-	0	Parent=Os03t0139500-01
Chr03	irgsp1_rep	CDS	2159540	2159650	.	-	0	Parent=Os03t0139500-01
Chr03	irgsp1_rep	three_prime_UTR	2159337	2159539	.	-	.	Parent=Os03t0139500-01
Chr03	irgsp1_rep	mRNA	2170144	2171794	.	+	.	ID=Os03t0139600-00;Name=Os03t0139600-00;Locus_id=Os03g0139600;CGSNL Gene Symbol=CYP96B2;CGSNL Gene Name=P-450 96B2;Oryzabase Gene Symbol Synonym(s)=OsCYP96B2;Oryzabase Gene Name Synonym(s)=CytoChrome P450 96B2;Note=Similar to CytoChrome P450 family protein.;Transcript_evidence=BT040099 (DDBJ);ORF_evidence=Q10S04 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);Oryzabase=19309;TENOR=Os03t0139600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	2170144	2171727	.	+	0	Parent=Os03t0139600-00
Chr03	irgsp1_rep	three_prime_UTR	2171728	2171794	.	+	.	Parent=Os03t0139600-00
Chr03	irgsp1_rep	mRNA	2199772	2201429	.	+	.	ID=Os03t0140100-01;Name=Os03t0140100-01;Locus_id=Os03g0140100;Oryzabase Gene Symbol Synonym(s)=MAH1%2C OsMAH1%2C OsCYP96B3%2C CYP96B3;Oryzabase Gene Name Synonym(s)=midchain alkane hydroxylase 1%2C CytoChrome P450 96B5%2C P-450 96B5;Note=CytoChrome P450 family protein.;Transcript_evidence=AK119195 (DDBJ%2C Best hit);ORF_evidence=A2XCB6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=001-041-C06;Oryzabase=18141;Expression=AK119195;TENOR=Os03t0140100-01;KEGG=Os03t0140100-01
Chr03	irgsp1_rep	five_prime_UTR	2199772	2199810	.	+	.	Parent=Os03t0140100-01
Chr03	irgsp1_rep	CDS	2199811	2201337	.	+	0	Parent=Os03t0140100-01
Chr03	irgsp1_rep	three_prime_UTR	2201338	2201429	.	+	.	Parent=Os03t0140100-01
Chr03	irgsp1_rep	mRNA	2199910	2201456	.	+	.	ID=Os03t0140100-02;Name=Os03t0140100-02;Locus_id=Os03g0140100;Oryzabase Gene Symbol Synonym(s)=MAH1%2C OsMAH1%2C OsCYP96B3%2C CYP96B3;Oryzabase Gene Name Synonym(s)=midchain alkane hydroxylase 1%2C CytoChrome P450 96B5%2C P-450 96B5;Note=Similar to CytoChrome P450 family protein.;Transcript_evidence=AK067844 (DDBJ%2C Best hit);ORF_evidence=A2XCB6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J013125N12;Oryzabase=18141;Expression=AK067844;TENOR=Os03t0140100-02;KEGG=Os03t0140100-02
Chr03	irgsp1_rep	CDS	2199910	2201337	.	+	0	Parent=Os03t0140100-02
Chr03	irgsp1_rep	three_prime_UTR	2201338	2201456	.	+	.	Parent=Os03t0140100-02
Chr03	irgsp1_rep	mRNA	2211807	2213793	.	+	.	ID=Os03t0140200-01;Name=Os03t0140200-01;Locus_id=Os03g0140200;CGSNL Gene Symbol=CYP96B5;CGSNL Gene Name=P-450 96B5;Oryzabase Gene Symbol Synonym(s)=OsCYP96B5;Oryzabase Gene Name Synonym(s)=CytoChrome P450 96B5;Note=Similar to CytoChrome P450 86A1 (EC 1.14.-.-) (CYPLXXXVI) (P450-dependent fatty acid omega-hydroxylase).;Transcript_evidence=AK061292 (DDBJ%2C Best hit);ORF_evidence=Q10S01 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: monooxygenase activity (GO:0004497),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C B-class (IPR002397),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=006-301-B03;Oryzabase=19310;Expression=AK061292;TENOR=Os03t0140200-01;KEGG=Os03t0140200-01
Chr03	irgsp1_rep	five_prime_UTR	2211807	2211844	.	+	.	Parent=Os03t0140200-01
Chr03	irgsp1_rep	CDS	2211845	2212029	.	+	0	Parent=Os03t0140200-01
Chr03	irgsp1_rep	CDS	2212897	2213395	.	+	1	Parent=Os03t0140200-01
Chr03	irgsp1_rep	three_prime_UTR	2213396	2213793	.	+	.	Parent=Os03t0140200-01
Chr03	irgsp1_rep	mRNA	2211807	2213941	.	+	.	ID=Os03t0140200-02;Name=Os03t0140200-02;Locus_id=Os03g0140200;RAP-DB Gene Symbol Synonym(s)=CYP96B5%2C WSL5;RAP-DB Gene Name Synonym(s)=CytoChrome P450 96B5%2C wax crystal-sparse leaf 5;CGSNL Gene Symbol=CYP96B5;CGSNL Gene Name=P-450 96B5;Oryzabase Gene Symbol Synonym(s)=OsCYP96B5;Oryzabase Gene Name Synonym(s)=CytoChrome P450 96B5;Note=CytoChrome P450 family member%2C Leaf cuticular wax synthesis;Transcript_evidence=Inferred from literature;ORF_evidence=Q10S01;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 superfamily (IPR036396),CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);Manual Curation=October 18%2C 2019;Literature_PMID=31618451;Oryzabase=19310;Subcellular location=endoplasmic reticulum (GO:0005783)
Chr03	irgsp1_rep	five_prime_UTR	2211807	2211844	.	+	.	Parent=Os03t0140200-02
Chr03	irgsp1_rep	CDS	2211845	2213395	.	+	0	Parent=Os03t0140200-02
Chr03	irgsp1_rep	three_prime_UTR	2213396	2213941	.	+	.	Parent=Os03t0140200-02
Chr03	irgsp1_rep	mRNA	2223105	2225039	.	-	.	ID=Os03t0140300-01;Name=Os03t0140300-01;Locus_id=Os03g0140300;Note=Conserved hypothetical protein.;Transcript_evidence=AK107532 (DDBJ%2C Best hit);ORF_evidence=NP_001183162.1 (RefSeq);NIAS_FLcDNA=002-129-G12;TENOR=Os03t0140300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	2224328	2225039	.	-	.	Parent=Os03t0140300-01
Chr03	irgsp1_rep	CDS	2223704	2224327	.	-	0	Parent=Os03t0140300-01
Chr03	irgsp1_rep	three_prime_UTR	2223105	2223703	.	-	.	Parent=Os03t0140300-01
Chr03	irgsp1_rep	mRNA	2223309	2225202	.	+	.	ID=Os03t0140400-01;Name=Os03t0140400-01;Locus_id=Os03g0140400;RAP-DB Gene Symbol Synonym(s)=SD37%2C OsCYP96B4%2C CYP96B4%2C CYP96B4/SD37%2C OsDSS1%2C DSS1;RAP-DB Gene Name Synonym(s)=SEMIDWARF 37%2C CytoChrome P450 96B4%2C P-450 96B4%2C semi-dwarf 37;CGSNL Gene Symbol=SD37;CGSNL Gene Name=SEMIDWARF 37;Oryzabase Gene Symbol Synonym(s)=OsCYP96B4%2C CYP96B4%2C CYP96B4/SD37%2C OsDSS1%2C DSS1;Oryzabase Gene Name Synonym(s)=CytoChrome P450 96B4%2C P-450 96B4%2C semi-dwarf 37;Note=CytoChrome P450 protein CYP96B4%2C Growth regulation%2C Drought stress response;Transcript_evidence=AK240742;ORF_evidence=Q10RZ9;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J043036O19;Manual Curation=June 9%2C 2015;Literature_PMID=25800365,24498428,22140509;Oryzabase=9791;TENOR=Os03t0140400-01;KEGG=Os03t0140400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	2223309	2223377	.	+	.	Parent=Os03t0140400-01
Chr03	irgsp1_rep	CDS	2223378	2224994	.	+	0	Parent=Os03t0140400-01
Chr03	irgsp1_rep	three_prime_UTR	2224995	2225202	.	+	.	Parent=Os03t0140400-01
Chr03	irgsp1_rep	mRNA	2225971	2228510	.	-	.	ID=Os03t0140500-01;Name=Os03t0140500-01;Locus_id=Os03g0140500;Note=Protein of unknown function DUF26 domain containing protein.;Transcript_evidence=AK106342 (DDBJ%2C Best hit);ORF_evidence=B9FAZ8 (UniProt);InterPro=Gnk2-homologous domain (IPR002902);NIAS_FLcDNA=002-101-G10;Expression=AK106342;TENOR=Os03t0140500-01;KEGG=Os03t0140500-01
Chr03	irgsp1_rep	five_prime_UTR	2228440	2228510	.	-	.	Parent=Os03t0140500-01
Chr03	irgsp1_rep	CDS	2227695	2228439	.	-	0	Parent=Os03t0140500-01
Chr03	irgsp1_rep	CDS	2226612	2226719	.	-	2	Parent=Os03t0140500-01
Chr03	irgsp1_rep	CDS	2226455	2226462	.	-	2	Parent=Os03t0140500-01
Chr03	irgsp1_rep	three_prime_UTR	2225971	2226454	.	-	.	Parent=Os03t0140500-01
Chr03	irgsp1_rep	mRNA	2226479	2228466	.	-	.	ID=Os03t0140500-02;Name=Os03t0140500-02;Locus_id=Os03g0140500;Note=Hypothetical conserved gene.;Transcript_evidence=AK071009 (DDBJ%2C Best hit);ORF_evidence=NP_565764.1 (RefSeq);InterPro=Gnk2-homologous domain (IPR002902);NIAS_FLcDNA=J023080L10;Expression=AK071009;TENOR=Os03t0140500-02;KEGG=Os03t0140500-02
Chr03	irgsp1_rep	five_prime_UTR	2228440	2228466	.	-	.	Parent=Os03t0140500-02
Chr03	irgsp1_rep	CDS	2227695	2228439	.	-	0	Parent=Os03t0140500-02
Chr03	irgsp1_rep	CDS	2226608	2226714	.	-	2	Parent=Os03t0140500-02
Chr03	irgsp1_rep	three_prime_UTR	2226479	2226607	.	-	.	Parent=Os03t0140500-02
Chr03	irgsp1_rep	mRNA	2231857	2233049	.	+	.	ID=Os03t0140551-01;Name=Os03t0140551-01;Locus_id=Os03g0140551;Note=Non-protein coding transcript.;Transcript_evidence=AK288184 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090005P17;TENOR=Os03t0140551-01
Chr03	irgsp1_rep	exon	2231857	2233049	.	+	.	Parent=Os03t0140551-01
Chr03	irgsp1_rep	mRNA	2243720	2245675	.	-	.	ID=Os03t0140650-00;Name=Os03t0140650-00;Locus_id=Os03g0140650;Note=Hypothetical gene.;Transcript_evidence=EU956731 (DDBJ);ORF_evidence=GeneMark;TENOR=Os03t0140650-00;KEGG=Os03t0140650-00
Chr03	irgsp1_rep	five_prime_UTR	2244626	2245675	.	-	.	Parent=Os03t0140650-00
Chr03	irgsp1_rep	CDS	2244565	2244625	.	-	0	Parent=Os03t0140650-00
Chr03	irgsp1_rep	CDS	2244234	2244412	.	-	2	Parent=Os03t0140650-00
Chr03	irgsp1_rep	three_prime_UTR	2243720	2244233	.	-	.	Parent=Os03t0140650-00
Chr03	irgsp1_rep	mRNA	2248907	2250627	.	+	.	ID=Os03t0140700-01;Name=Os03t0140700-01;Locus_id=Os03g0140700;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK070000 (DDBJ%2C Best hit);ORF_evidence=A2XCC2 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026);NIAS_FLcDNA=J023039B07;Expression=AK070000;TENOR=Os03t0140700-01;KEGG=Os03t0140700-01
Chr03	irgsp1_rep	five_prime_UTR	2248907	2249139	.	+	.	Parent=Os03t0140700-01
Chr03	irgsp1_rep	CDS	2249140	2249844	.	+	0	Parent=Os03t0140700-01
Chr03	irgsp1_rep	CDS	2249948	2250120	.	+	0	Parent=Os03t0140700-01
Chr03	irgsp1_rep	CDS	2250260	2250401	.	+	1	Parent=Os03t0140700-01
Chr03	irgsp1_rep	three_prime_UTR	2250402	2250627	.	+	.	Parent=Os03t0140700-01
Chr03	irgsp1_rep	mRNA	2260797	2263995	.	+	.	ID=Os03t0140900-00;Name=Os03t0140900-00;Locus_id=Os03g0140900;Note=Conserved hypothetical protein.;Transcript_evidence=EU971468 (DDBJ);ORF_evidence=NP_001048923.2 (RefSeq);TENOR=Os03t0140900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	2260797	2261144	.	+	0	Parent=Os03t0140900-00
Chr03	irgsp1_rep	CDS	2262371	2262454	.	+	0	Parent=Os03t0140900-00
Chr03	irgsp1_rep	CDS	2262853	2263407	.	+	0	Parent=Os03t0140900-00
Chr03	irgsp1_rep	CDS	2263552	2263995	.	+	0	Parent=Os03t0140900-00
Chr03	irgsp1_rep	mRNA	2264925	2266928	.	+	.	ID=Os03t0141000-01;Name=Os03t0141000-01;Locus_id=Os03g0141000;Oryzabase Gene Name Synonym(s)=Ribosomal protein L21;Note=60S ribosomal protein L21.;Transcript_evidence=AK120267 (DDBJ%2C Best hit);ORF_evidence=Q9ZSU8 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L21e (IPR001147),Translation protein SH3-like (IPR008991),Ribosomal protein L21e%2C conserved site (IPR018259);NIAS_FLcDNA=J013047I10;Oryzabase=17724;Expression=AK120267;TENOR=Os03t0141000-01;KEGG=Os03t0141000-01
Chr03	irgsp1_rep	five_prime_UTR	2264925	2265003	.	+	.	Parent=Os03t0141000-01
Chr03	irgsp1_rep	CDS	2265004	2265246	.	+	0	Parent=Os03t0141000-01
Chr03	irgsp1_rep	three_prime_UTR	2265247	2266928	.	+	.	Parent=Os03t0141000-01
Chr03	irgsp1_rep	mRNA	2268313	2271657	.	-	.	ID=Os03t0141100-01;Name=Os03t0141100-01;Locus_id=Os03g0141100;Note=Myb/SANT-like domain domain containing protein.;Transcript_evidence=AK110816 (DDBJ%2C Best hit);ORF_evidence=B9FN25 (UniProt);InterPro=Myb/SANT-like domain (IPR024752);NIAS_FLcDNA=002-171-G04;Expression=AK110816;TENOR=Os03t0141100-01;KEGG=Os03t0141100-01
Chr03	irgsp1_rep	five_prime_UTR	2271393	2271657	.	-	.	Parent=Os03t0141100-01
Chr03	irgsp1_rep	five_prime_UTR	2269623	2269623	.	-	.	Parent=Os03t0141100-01
Chr03	irgsp1_rep	CDS	2269275	2269622	.	-	0	Parent=Os03t0141100-01
Chr03	irgsp1_rep	CDS	2268562	2269179	.	-	0	Parent=Os03t0141100-01
Chr03	irgsp1_rep	three_prime_UTR	2268313	2268561	.	-	.	Parent=Os03t0141100-01
Chr03	irgsp1_rep	mRNA	2272966	2276161	.	+	.	ID=Os03t0141200-01;Name=Os03t0141200-01;Locus_id=Os03g0141200;Oryzabase Gene Symbol Synonym(s)=OsBamy2%2C Bamy2;Oryzabase Gene Name Synonym(s)=beta-amylase 2;Note=Similar to Beta-amylase PCT-BMYI (EC 3.2.1.2).;Transcript_evidence=AK068968 (DDBJ%2C Best hit),AK100092 (DDBJ%2C Best hit);ORF_evidence=A3ADZ2 (UniProt);GO=Biological Process: polysaccharide catabolic process (GO:0000272),Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: beta-amylase activity (GO:0016161),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 14B%2C plant (IPR001371),Glycoside hydrolase%2C family 14 (IPR001554),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 14%2C conserved site (IPR018238);NIAS_FLcDNA=J023002J01,J023003L18;Oryzabase=21705;Expression=AK068968;TENOR=Os03t0141200-01;KEGG=Os03t0141200-01 (EC:3.2.1.2)
Chr03	irgsp1_rep	five_prime_UTR	2272966	2273220	.	+	.	Parent=Os03t0141200-01
Chr03	irgsp1_rep	CDS	2273221	2273777	.	+	0	Parent=Os03t0141200-01
Chr03	irgsp1_rep	CDS	2274704	2274914	.	+	1	Parent=Os03t0141200-01
Chr03	irgsp1_rep	CDS	2275005	2275115	.	+	0	Parent=Os03t0141200-01
Chr03	irgsp1_rep	CDS	2275233	2276027	.	+	0	Parent=Os03t0141200-01
Chr03	irgsp1_rep	three_prime_UTR	2276028	2276161	.	+	.	Parent=Os03t0141200-01
Chr03	irgsp1_rep	mRNA	2295350	2299785	.	+	.	ID=Os03t0141700-01;Name=Os03t0141700-01;Locus_id=Os03g0141700;Note=Conserved hypothetical protein.;Transcript_evidence=AK102965 (DDBJ%2C Best hit);ORF_evidence=A2XCC9 (UniProt);NIAS_FLcDNA=J033115I21;Expression=AK102965;TENOR=Os03t0141700-01;KEGG=Os03t0141700-01
Chr03	irgsp1_rep	five_prime_UTR	2295350	2295790	.	+	.	Parent=Os03t0141700-01
Chr03	irgsp1_rep	five_prime_UTR	2297390	2297397	.	+	.	Parent=Os03t0141700-01
Chr03	irgsp1_rep	CDS	2297398	2297581	.	+	0	Parent=Os03t0141700-01
Chr03	irgsp1_rep	CDS	2297712	2298062	.	+	2	Parent=Os03t0141700-01
Chr03	irgsp1_rep	CDS	2298173	2298390	.	+	2	Parent=Os03t0141700-01
Chr03	irgsp1_rep	CDS	2298960	2299580	.	+	0	Parent=Os03t0141700-01
Chr03	irgsp1_rep	three_prime_UTR	2299581	2299785	.	+	.	Parent=Os03t0141700-01
Chr03	irgsp1_rep	mRNA	2302598	2306807	.	+	.	ID=Os03t0141800-00;Name=Os03t0141800-00;Locus_id=Os03g0141800;Note=Protein of unknown function DUF594 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001048928.2 (RefSeq);InterPro=Protein of unknown function DUF594 (IPR007658);TENOR=Os03t0141800-00
Chr03	irgsp1_rep	CDS	2302598	2303842	.	+	0	Parent=Os03t0141800-00
Chr03	irgsp1_rep	CDS	2305845	2306807	.	+	0	Parent=Os03t0141800-00
Chr03	irgsp1_rep	mRNA	2330581	2331600	.	+	.	ID=Os03t0142200-01;Name=Os03t0142200-01;Locus_id=Os03g0142200;Note=Protein of unknown function DUF594 domain containing protein.;Transcript_evidence=AK108534 (DDBJ%2C Best hit);ORF_evidence=Q10RY1 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);NIAS_FLcDNA=002-144-C06;TENOR=Os03t0142200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	2330581	2331429	.	+	0	Parent=Os03t0142200-01
Chr03	irgsp1_rep	three_prime_UTR	2331430	2331600	.	+	.	Parent=Os03t0142200-01
Chr03	irgsp1_rep	mRNA	2336789	2341656	.	+	.	ID=Os03t0142500-01;Name=Os03t0142500-01;Locus_id=Os03g0142500;Oryzabase Gene Symbol Synonym(s)=OsRFPH2-9;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPH2-9%2C RING-H2 protein 9;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK100238 (DDBJ%2C Best hit);ORF_evidence=NP_001148048.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),von Willebrand factor%2C type A (IPR002035),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J023052J15;Oryzabase=11770;Expression=AK100238;TENOR=Os03t0142500-01;KEGG=Os03t0142500-01
Chr03	irgsp1_rep	five_prime_UTR	2336789	2337048	.	+	.	Parent=Os03t0142500-01
Chr03	irgsp1_rep	CDS	2337049	2337264	.	+	0	Parent=Os03t0142500-01
Chr03	irgsp1_rep	CDS	2339451	2341319	.	+	0	Parent=Os03t0142500-01
Chr03	irgsp1_rep	three_prime_UTR	2341320	2341656	.	+	.	Parent=Os03t0142500-01
Chr03	irgsp1_rep	mRNA	2341955	2343111	.	-	.	ID=Os03t0142600-00;Name=Os03t0142600-00;Locus_id=Os03g0142600;Note=Myb transcription factor domain containing protein.;Transcript_evidence=EU960450 (DDBJ);ORF_evidence=NP_001148697.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);TENOR=Os03t0142600-00;KEGG=Os03t0142600-00
Chr03	irgsp1_rep	CDS	2342976	2343111	.	-	0	Parent=Os03t0142600-00
Chr03	irgsp1_rep	CDS	2342755	2342884	.	-	2	Parent=Os03t0142600-00
Chr03	irgsp1_rep	CDS	2342158	2342635	.	-	1	Parent=Os03t0142600-00
Chr03	irgsp1_rep	three_prime_UTR	2341955	2342157	.	-	.	Parent=Os03t0142600-00
Chr03	irgsp1_rep	mRNA	2353582	2353690	.	+	.	ID=Os03t0142666-00;Name=Os03t0142666-00;Locus_id=Os03g0142666;Note=Non-protein coding transcript.;Transcript_evidence=EU942149 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0142666-00
Chr03	irgsp1_rep	exon	2353582	2353690	.	+	.	Parent=Os03t0142666-00
Chr03	irgsp1_rep	mRNA	2367856	2374434	.	+	.	ID=Os03t0142800-01;Name=Os03t0142800-01;Locus_id=Os03g0142800;CGSNL Gene Symbol=MRP13;CGSNL Gene Name=MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 13;Oryzabase Gene Symbol Synonym(s)=OsABCC13%2C OsMRP13%2C OsMRP5;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCC subgroup member 13%2C multidrug resistance-associated protein 13;Note=Similar to MRP-like ABC transporter.;Transcript_evidence=AK121451 (DDBJ%2C Best hit);ORF_evidence=A7KVC2 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);NIAS_FLcDNA=J023142K21;Oryzabase=11964;Expression=AK121451;TENOR=Os03t0142800-01;KEGG=Os03t0142800-01
Chr03	irgsp1_rep	five_prime_UTR	2367856	2368444	.	+	.	Parent=Os03t0142800-01
Chr03	irgsp1_rep	CDS	2368445	2370487	.	+	0	Parent=Os03t0142800-01
Chr03	irgsp1_rep	CDS	2370562	2370882	.	+	0	Parent=Os03t0142800-01
Chr03	irgsp1_rep	CDS	2370965	2371051	.	+	0	Parent=Os03t0142800-01
Chr03	irgsp1_rep	CDS	2371244	2371921	.	+	0	Parent=Os03t0142800-01
Chr03	irgsp1_rep	CDS	2372013	2372177	.	+	0	Parent=Os03t0142800-01
Chr03	irgsp1_rep	CDS	2372352	2372646	.	+	0	Parent=Os03t0142800-01
Chr03	irgsp1_rep	CDS	2372794	2373008	.	+	2	Parent=Os03t0142800-01
Chr03	irgsp1_rep	CDS	2373098	2373403	.	+	0	Parent=Os03t0142800-01
Chr03	irgsp1_rep	CDS	2373482	2373545	.	+	0	Parent=Os03t0142800-01
Chr03	irgsp1_rep	CDS	2373639	2373878	.	+	2	Parent=Os03t0142800-01
Chr03	irgsp1_rep	CDS	2373996	2374099	.	+	2	Parent=Os03t0142800-01
Chr03	irgsp1_rep	three_prime_UTR	2374100	2374434	.	+	.	Parent=Os03t0142800-01
Chr03	irgsp1_rep	mRNA	2371786	2374437	.	+	.	ID=Os03t0142800-02;Name=Os03t0142800-02;Locus_id=Os03g0142800;CGSNL Gene Symbol=MRP13;CGSNL Gene Name=MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 13;Oryzabase Gene Symbol Synonym(s)=OsABCC13%2C OsMRP13%2C OsMRP5;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCC subgroup member 13%2C multidrug resistance-associated protein 13;Note=Hypothetical conserved gene.;Transcript_evidence=AK064325 (DDBJ%2C Best hit);ORF_evidence=B9FB03 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C integral membrane type 1 (IPR017940);NIAS_FLcDNA=002-107-F05;Oryzabase=11964;Expression=AK064325;TENOR=Os03t0142800-02;KEGG=Os03t0142800-02
Chr03	irgsp1_rep	five_prime_UTR	2371786	2371786	.	+	.	Parent=Os03t0142800-02
Chr03	irgsp1_rep	CDS	2371787	2371921	.	+	0	Parent=Os03t0142800-02
Chr03	irgsp1_rep	CDS	2372013	2372177	.	+	0	Parent=Os03t0142800-02
Chr03	irgsp1_rep	CDS	2372352	2372646	.	+	0	Parent=Os03t0142800-02
Chr03	irgsp1_rep	CDS	2372794	2373008	.	+	2	Parent=Os03t0142800-02
Chr03	irgsp1_rep	CDS	2373098	2373403	.	+	0	Parent=Os03t0142800-02
Chr03	irgsp1_rep	CDS	2373482	2373545	.	+	0	Parent=Os03t0142800-02
Chr03	irgsp1_rep	CDS	2373639	2373878	.	+	2	Parent=Os03t0142800-02
Chr03	irgsp1_rep	CDS	2373996	2374099	.	+	2	Parent=Os03t0142800-02
Chr03	irgsp1_rep	three_prime_UTR	2374100	2374437	.	+	.	Parent=Os03t0142800-02
Chr03	irgsp1_rep	mRNA	2375216	2378035	.	-	.	ID=Os03t0142900-01;Name=Os03t0142900-01;Locus_id=Os03g0142900;Note=Protein of unknown function DUF946%2C plant family protein.;Transcript_evidence=AK120438 (DDBJ%2C Best hit),AK067103 (DDBJ%2C Best hit);ORF_evidence=O64496 (UniProt);NIAS_FLcDNA=J013098E18,J013097D18;TENOR=Os03t0142900-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	2377875	2378035	.	-	.	Parent=Os03t0142900-01
Chr03	irgsp1_rep	CDS	2377766	2377874	.	-	0	Parent=Os03t0142900-01
Chr03	irgsp1_rep	CDS	2375537	2377074	.	-	2	Parent=Os03t0142900-01
Chr03	irgsp1_rep	three_prime_UTR	2375216	2375536	.	-	.	Parent=Os03t0142900-01
Chr03	irgsp1_rep	mRNA	2380055	2384722	.	-	.	ID=Os03t0143000-01;Name=Os03t0143000-01;Locus_id=Os03g0143000;Note=Conserved hypothetical protein.;Transcript_evidence=AK073102 (DDBJ%2C Best hit);ORF_evidence=Q10RX4 (UniProt);NIAS_FLcDNA=J033022E04;TENOR=Os03t0143000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	2384719	2384722	.	-	.	Parent=Os03t0143000-01
Chr03	irgsp1_rep	CDS	2384565	2384718	.	-	0	Parent=Os03t0143000-01
Chr03	irgsp1_rep	CDS	2384323	2384471	.	-	2	Parent=Os03t0143000-01
Chr03	irgsp1_rep	three_prime_UTR	2383718	2384322	.	-	.	Parent=Os03t0143000-01
Chr03	irgsp1_rep	three_prime_UTR	2383599	2383631	.	-	.	Parent=Os03t0143000-01
Chr03	irgsp1_rep	three_prime_UTR	2383244	2383348	.	-	.	Parent=Os03t0143000-01
Chr03	irgsp1_rep	three_prime_UTR	2382992	2383099	.	-	.	Parent=Os03t0143000-01
Chr03	irgsp1_rep	three_prime_UTR	2382810	2382881	.	-	.	Parent=Os03t0143000-01
Chr03	irgsp1_rep	three_prime_UTR	2382658	2382708	.	-	.	Parent=Os03t0143000-01
Chr03	irgsp1_rep	three_prime_UTR	2382320	2382393	.	-	.	Parent=Os03t0143000-01
Chr03	irgsp1_rep	three_prime_UTR	2382086	2382210	.	-	.	Parent=Os03t0143000-01
Chr03	irgsp1_rep	three_prime_UTR	2381635	2381830	.	-	.	Parent=Os03t0143000-01
Chr03	irgsp1_rep	three_prime_UTR	2381081	2381213	.	-	.	Parent=Os03t0143000-01
Chr03	irgsp1_rep	three_prime_UTR	2380055	2380862	.	-	.	Parent=Os03t0143000-01
Chr03	irgsp1_rep	mRNA	2387820	2390171	.	+	.	ID=Os03t0143100-00;Name=Os03t0143100-00;Locus_id=Os03g0143100;Oryzabase Gene Symbol Synonym(s)=OsSDD1%2C SDD1%2C OsSub26%2C SUB26;Oryzabase Gene Name Synonym(s)=Subtilisin 26%2C SUBTILISIN 26%2C STOMATA DENSITY AND DISTRIBUTION1%2C STOMATA DENSITY AND DISTRIBUTION 1;Note=Similar to SDD1 (STOMATAL DENSITY AND DISTRIBUTION)%3B subtilase.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_563701.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Proteinase inhibitor%2C propeptide (IPR009020),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C  Asp-active site (IPR023827),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);Oryzabase=19854;TENOR=Os03t0143100-00;KEGG=Os03t0143100-00
Chr03	irgsp1_rep	CDS	2387820	2390171	.	+	0	Parent=Os03t0143100-00
Chr03	irgsp1_rep	mRNA	2387925	2390102	.	-	.	ID=Os03t0143150-00;Name=Os03t0143150-00;Locus_id=Os03g0143150;Note=Hypothetical protein.;Transcript_evidence=EU955468 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0143150-00
Chr03	irgsp1_rep	five_prime_UTR	2389206	2390102	.	-	.	Parent=Os03t0143150-00
Chr03	irgsp1_rep	CDS	2387925	2389205	.	-	0	Parent=Os03t0143150-00
Chr03	irgsp1_rep	mRNA	2394571	2394947	.	+	.	ID=Os03t0143200-01;Name=Os03t0143200-01;Locus_id=Os03g0143200;Note=Non-protein coding transcript.;Transcript_evidence=AK062932 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-109-A09;TENOR=Os03t0143200-01
Chr03	irgsp1_rep	exon	2394571	2394947	.	+	.	Parent=Os03t0143200-01
Chr03	irgsp1_rep	mRNA	2396768	2400551	.	-	.	ID=Os03t0143300-01;Name=Os03t0143300-01;Locus_id=Os03g0143300;Note=Similar to Cysteinyl-tRNA synthetase.;Transcript_evidence=AK066607 (DDBJ%2C Best hit);ORF_evidence=B6SH65 (UniProt);GO=Biological Process: cysteinyl-tRNA aminoacylation (GO:0006423),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: cysteine-tRNA ligase activity (GO:0004817),Molecular Function: ATP binding (GO:0005524);InterPro=Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Cysteinyl-tRNA synthetase%2C class Ia (IPR015803);NIAS_FLcDNA=J013071P10;TENOR=Os03t0143300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	2400253	2400551	.	-	0	Parent=Os03t0143300-01
Chr03	irgsp1_rep	CDS	2399714	2399777	.	-	1	Parent=Os03t0143300-01
Chr03	irgsp1_rep	CDS	2399519	2399569	.	-	0	Parent=Os03t0143300-01
Chr03	irgsp1_rep	three_prime_UTR	2399041	2399518	.	-	.	Parent=Os03t0143300-01
Chr03	irgsp1_rep	three_prime_UTR	2398539	2398709	.	-	.	Parent=Os03t0143300-01
Chr03	irgsp1_rep	three_prime_UTR	2398177	2398458	.	-	.	Parent=Os03t0143300-01
Chr03	irgsp1_rep	three_prime_UTR	2397961	2398086	.	-	.	Parent=Os03t0143300-01
Chr03	irgsp1_rep	three_prime_UTR	2397642	2397845	.	-	.	Parent=Os03t0143300-01
Chr03	irgsp1_rep	three_prime_UTR	2397358	2397540	.	-	.	Parent=Os03t0143300-01
Chr03	irgsp1_rep	three_prime_UTR	2396768	2397252	.	-	.	Parent=Os03t0143300-01
Chr03	irgsp1_rep	mRNA	2401014	2406713	.	-	.	ID=Os03t0143400-01;Name=Os03t0143400-01;Locus_id=Os03g0143400;Oryzabase Gene Symbol Synonym(s)=htpB;Oryzabase Gene Name Synonym(s)=heat-shock protein 60;Note=Similar to mitochondrial chaperonin-60 [Oryza sativa (japonica cultivar-group)].;Transcript_evidence=AK073999 (DDBJ%2C Best hit);ORF_evidence=NP_001105716.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Biological Process: protein refolding (GO:0042026),Biological Process: cellular protein metabolic process (GO:0044267),Cellular Component: cytoplasm (GO:0005737),Molecular Function: ATP binding (GO:0005524);InterPro=Chaperonin Cpn60 (IPR001844),Chaperonin Cpn60/TCP-1 (IPR002423),Chaperonin Cpn60%2C conserved site (IPR018370);NIAS_FLcDNA=J033073C08;Oryzabase=17625;Expression=AK073999;TENOR=Os03t0143400-01;KEGG=Os03t0143400-01
Chr03	irgsp1_rep	five_prime_UTR	2406612	2406713	.	-	.	Parent=Os03t0143400-01
Chr03	irgsp1_rep	CDS	2406574	2406611	.	-	0	Parent=Os03t0143400-01
Chr03	irgsp1_rep	CDS	2406449	2406473	.	-	1	Parent=Os03t0143400-01
Chr03	irgsp1_rep	CDS	2406111	2406242	.	-	0	Parent=Os03t0143400-01
Chr03	irgsp1_rep	CDS	2405438	2405597	.	-	0	Parent=Os03t0143400-01
Chr03	irgsp1_rep	CDS	2405009	2405184	.	-	2	Parent=Os03t0143400-01
Chr03	irgsp1_rep	CDS	2404804	2404899	.	-	0	Parent=Os03t0143400-01
Chr03	irgsp1_rep	CDS	2404235	2404339	.	-	0	Parent=Os03t0143400-01
Chr03	irgsp1_rep	CDS	2404072	2404158	.	-	0	Parent=Os03t0143400-01
Chr03	irgsp1_rep	CDS	2403883	2403972	.	-	0	Parent=Os03t0143400-01
Chr03	irgsp1_rep	CDS	2403724	2403804	.	-	0	Parent=Os03t0143400-01
Chr03	irgsp1_rep	CDS	2403568	2403636	.	-	0	Parent=Os03t0143400-01
Chr03	irgsp1_rep	CDS	2402937	2403014	.	-	0	Parent=Os03t0143400-01
Chr03	irgsp1_rep	CDS	2402746	2402841	.	-	0	Parent=Os03t0143400-01
Chr03	irgsp1_rep	CDS	2402354	2402453	.	-	0	Parent=Os03t0143400-01
Chr03	irgsp1_rep	CDS	2402154	2402257	.	-	2	Parent=Os03t0143400-01
Chr03	irgsp1_rep	CDS	2401975	2402080	.	-	0	Parent=Os03t0143400-01
Chr03	irgsp1_rep	CDS	2401819	2401897	.	-	2	Parent=Os03t0143400-01
Chr03	irgsp1_rep	CDS	2401400	2401511	.	-	1	Parent=Os03t0143400-01
Chr03	irgsp1_rep	three_prime_UTR	2401014	2401399	.	-	.	Parent=Os03t0143400-01
Chr03	irgsp1_rep	mRNA	2401401	2402441	.	+	.	ID=Os03t0143466-00;Name=Os03t0143466-00;Locus_id=Os03g0143466;Note=Non-protein coding transcript.;Transcript_evidence=BT016176 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0143466-00
Chr03	irgsp1_rep	exon	2401401	2401490	.	+	.	Parent=Os03t0143466-00
Chr03	irgsp1_rep	exon	2401798	2401901	.	+	.	Parent=Os03t0143466-00
Chr03	irgsp1_rep	exon	2401981	2402080	.	+	.	Parent=Os03t0143466-00
Chr03	irgsp1_rep	exon	2402154	2402261	.	+	.	Parent=Os03t0143466-00
Chr03	irgsp1_rep	exon	2402351	2402441	.	+	.	Parent=Os03t0143466-00
Chr03	irgsp1_rep	mRNA	2404986	2406245	.	+	.	ID=Os03t0143532-00;Name=Os03t0143532-00;Locus_id=Os03g0143532;Note=Hypothetical gene.;Transcript_evidence=BT087018 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0143532-00;KEGG=Os03t0143532-00
Chr03	irgsp1_rep	five_prime_UTR	2404986	2405175	.	+	.	Parent=Os03t0143532-00
Chr03	irgsp1_rep	CDS	2405176	2405180	.	+	0	Parent=Os03t0143532-00
Chr03	irgsp1_rep	CDS	2405432	2405589	.	+	1	Parent=Os03t0143532-00
Chr03	irgsp1_rep	CDS	2406104	2406213	.	+	2	Parent=Os03t0143532-00
Chr03	irgsp1_rep	three_prime_UTR	2406214	2406245	.	+	.	Parent=Os03t0143532-00
Chr03	irgsp1_rep	mRNA	2409889	2413431	.	+	.	ID=Os03t0143600-01;Name=Os03t0143600-01;Locus_id=Os03g0143600;Oryzabase Gene Name Synonym(s)=PHD zinc finger protein;Note=Similar to Inhibitor of growth protein 1. Splice isoform 2.;Transcript_evidence=AK068424 (DDBJ%2C Best hit);ORF_evidence=NP_001148845.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-type%2C conserved site (IPR019786),Zinc finger%2C PHD-finger (IPR019787),Inhibitor of growth protein%2C N-terminal (IPR024610);NIAS_FLcDNA=J013154F02;Oryzabase=16279;Expression=AK068424;TENOR=Os03t0143600-01;KEGG=Os03t0143600-01
Chr03	irgsp1_rep	five_prime_UTR	2409889	2410043	.	+	.	Parent=Os03t0143600-01
Chr03	irgsp1_rep	CDS	2410044	2410071	.	+	0	Parent=Os03t0143600-01
Chr03	irgsp1_rep	CDS	2411044	2411115	.	+	2	Parent=Os03t0143600-01
Chr03	irgsp1_rep	CDS	2411724	2411911	.	+	2	Parent=Os03t0143600-01
Chr03	irgsp1_rep	CDS	2412356	2412416	.	+	0	Parent=Os03t0143600-01
Chr03	irgsp1_rep	CDS	2412519	2412687	.	+	2	Parent=Os03t0143600-01
Chr03	irgsp1_rep	CDS	2412770	2412902	.	+	1	Parent=Os03t0143600-01
Chr03	irgsp1_rep	CDS	2413013	2413123	.	+	0	Parent=Os03t0143600-01
Chr03	irgsp1_rep	three_prime_UTR	2413124	2413431	.	+	.	Parent=Os03t0143600-01
Chr03	irgsp1_rep	mRNA	2415606	2419559	.	+	.	ID=Os03t0143700-01;Name=Os03t0143700-01;Locus_id=Os03g0143700;Note=Protein of unknown function DUF3741 domain containing protein.;Transcript_evidence=AK066360 (DDBJ%2C Best hit);ORF_evidence=A2XCE1 (UniProt);InterPro=Protein of unknown function DUF3741 (IPR022212);NIAS_FLcDNA=J013066M09;Expression=AK066360;TENOR=Os03t0143700-01;KEGG=Os03t0143700-01
Chr03	irgsp1_rep	five_prime_UTR	2415606	2415748	.	+	.	Parent=Os03t0143700-01
Chr03	irgsp1_rep	five_prime_UTR	2415993	2416069	.	+	.	Parent=Os03t0143700-01
Chr03	irgsp1_rep	CDS	2416070	2416127	.	+	0	Parent=Os03t0143700-01
Chr03	irgsp1_rep	CDS	2416301	2416356	.	+	2	Parent=Os03t0143700-01
Chr03	irgsp1_rep	CDS	2416465	2418243	.	+	0	Parent=Os03t0143700-01
Chr03	irgsp1_rep	CDS	2418341	2418494	.	+	0	Parent=Os03t0143700-01
Chr03	irgsp1_rep	CDS	2418680	2419338	.	+	2	Parent=Os03t0143700-01
Chr03	irgsp1_rep	three_prime_UTR	2419339	2419559	.	+	.	Parent=Os03t0143700-01
Chr03	irgsp1_rep	mRNA	2417244	2419564	.	+	.	ID=Os03t0143700-02;Name=Os03t0143700-02;Locus_id=Os03g0143700;Note=Hypothetical conserved gene.;Transcript_evidence=AK060736 (DDBJ%2C Best hit);ORF_evidence=A2XCE1 (UniProt);NIAS_FLcDNA=001-032-C06;Expression=AK060736;TENOR=Os03t0143700-02;KEGG=Os03t0143700-02
Chr03	irgsp1_rep	five_prime_UTR	2417244	2417244	.	+	.	Parent=Os03t0143700-02
Chr03	irgsp1_rep	CDS	2417245	2418243	.	+	0	Parent=Os03t0143700-02
Chr03	irgsp1_rep	CDS	2418341	2418494	.	+	0	Parent=Os03t0143700-02
Chr03	irgsp1_rep	CDS	2418680	2419338	.	+	2	Parent=Os03t0143700-02
Chr03	irgsp1_rep	three_prime_UTR	2419339	2419564	.	+	.	Parent=Os03t0143700-02
Chr03	irgsp1_rep	mRNA	2432922	2448897	.	+	.	ID=Os03t0143800-01;Name=Os03t0143800-01;Locus_id=Os03g0143800;RAP-DB Gene Symbol Synonym(s)=LPL2;RAP-DB Gene Name Synonym(s)=less pronounced lobe epidermal cell2;CGSNL Gene Symbol=LPL2;CGSNL Gene Name=LESS PRONOUNCED LOBE EPIDERMAL CELL 2;Oryzabase Gene Name Synonym(s)=less pronounced lobe epidermal cell2%2C PIROGI/Specifically Rac1-associated protein 1 (PIR/SRA1)-like protein;Note=PIROGI/Specifically Rac1-associated protein 1 (PIR/SRA1)-like protein%2C Homolog of SCAR/WAVE complex components%2C Control of epidermal cell morphogenesis;Transcript_evidence=Inferred from literature (Zhonghua 11);ORF_evidence=Inferred from literature;InterPro=Protein of unknown function DUF1394 (IPR009828),Cytoplasmic FMR1-interacting (IPR008081);NIAS_FLcDNA=J075099N09 (truncated);Manual Curation=June 22%2C 2017;Literature_PMID=27252469;Oryzabase=22381;TENOR=Os03t0143800-00;KEGG=Os03t0143800-00
Chr03	irgsp1_rep	CDS	2432922	2432975	.	+	0	Parent=Os03t0143800-01
Chr03	irgsp1_rep	CDS	2433982	2434054	.	+	0	Parent=Os03t0143800-01
Chr03	irgsp1_rep	CDS	2434303	2434367	.	+	2	Parent=Os03t0143800-01
Chr03	irgsp1_rep	CDS	2434501	2434578	.	+	0	Parent=Os03t0143800-01
Chr03	irgsp1_rep	CDS	2435093	2435212	.	+	0	Parent=Os03t0143800-01
Chr03	irgsp1_rep	CDS	2436234	2436304	.	+	0	Parent=Os03t0143800-01
Chr03	irgsp1_rep	CDS	2437021	2437113	.	+	1	Parent=Os03t0143800-01
Chr03	irgsp1_rep	CDS	2437455	2437524	.	+	1	Parent=Os03t0143800-01
Chr03	irgsp1_rep	CDS	2437889	2437953	.	+	0	Parent=Os03t0143800-01
Chr03	irgsp1_rep	CDS	2438454	2438649	.	+	1	Parent=Os03t0143800-01
Chr03	irgsp1_rep	CDS	2438771	2438922	.	+	0	Parent=Os03t0143800-01
Chr03	irgsp1_rep	CDS	2439148	2439241	.	+	1	Parent=Os03t0143800-01
Chr03	irgsp1_rep	CDS	2439558	2439770	.	+	0	Parent=Os03t0143800-01
Chr03	irgsp1_rep	CDS	2440654	2440865	.	+	0	Parent=Os03t0143800-01
Chr03	irgsp1_rep	CDS	2441114	2441255	.	+	1	Parent=Os03t0143800-01
Chr03	irgsp1_rep	CDS	2441637	2441805	.	+	0	Parent=Os03t0143800-01
Chr03	irgsp1_rep	CDS	2442263	2442339	.	+	2	Parent=Os03t0143800-01
Chr03	irgsp1_rep	CDS	2442606	2442776	.	+	0	Parent=Os03t0143800-01
Chr03	irgsp1_rep	CDS	2443308	2443384	.	+	0	Parent=Os03t0143800-01
Chr03	irgsp1_rep	CDS	2443512	2443614	.	+	1	Parent=Os03t0143800-01
Chr03	irgsp1_rep	CDS	2444279	2444398	.	+	0	Parent=Os03t0143800-01
Chr03	irgsp1_rep	CDS	2444514	2444657	.	+	0	Parent=Os03t0143800-01
Chr03	irgsp1_rep	CDS	2445039	2445188	.	+	0	Parent=Os03t0143800-01
Chr03	irgsp1_rep	CDS	2445611	2445754	.	+	0	Parent=Os03t0143800-01
Chr03	irgsp1_rep	CDS	2446029	2446116	.	+	0	Parent=Os03t0143800-01
Chr03	irgsp1_rep	CDS	2446885	2447012	.	+	2	Parent=Os03t0143800-01
Chr03	irgsp1_rep	CDS	2447542	2447746	.	+	0	Parent=Os03t0143800-01
Chr03	irgsp1_rep	CDS	2448056	2448228	.	+	2	Parent=Os03t0143800-01
Chr03	irgsp1_rep	CDS	2448387	2448605	.	+	0	Parent=Os03t0143800-01
Chr03	irgsp1_rep	CDS	2448703	2448897	.	+	0	Parent=Os03t0143800-01
Chr03	irgsp1_rep	mRNA	2449426	2450253	.	+	.	ID=Os03t0143900-00;Name=Os03t0143900-00;Locus_id=Os03g0143900;Note=Plant disease resistance response protein family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=XP_002870373.1 (RefSeq);InterPro=Plant disease resistance response protein (IPR004265);TENOR=Os03t0143900-00;KEGG=Os03t0143900-00
Chr03	irgsp1_rep	CDS	2449426	2450253	.	+	0	Parent=Os03t0143900-00
Chr03	irgsp1_rep	mRNA	2450455	2454468	.	-	.	ID=Os03t0144000-01;Name=Os03t0144000-01;Locus_id=Os03g0144000;CGSNL Gene Symbol=MEICA1;CGSNL Gene Name=MEIOTIC CHROMOSOME ASSOCIATION 1;Oryzabase Gene Name Synonym(s)=Meiotic Chromosome Association 1;Note=Conserved hypothetical protein.;Transcript_evidence=AK065797 (DDBJ%2C Best hit);ORF_evidence=B9FB12 (UniProt);NIAS_FLcDNA=J013041K05;Oryzabase=21767;TENOR=Os03t0144000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	2454467	2454468	.	-	.	Parent=Os03t0144000-01
Chr03	irgsp1_rep	CDS	2454263	2454466	.	-	0	Parent=Os03t0144000-01
Chr03	irgsp1_rep	CDS	2453792	2453929	.	-	0	Parent=Os03t0144000-01
Chr03	irgsp1_rep	CDS	2451664	2453286	.	-	0	Parent=Os03t0144000-01
Chr03	irgsp1_rep	three_prime_UTR	2450455	2451663	.	-	.	Parent=Os03t0144000-01
Chr03	irgsp1_rep	mRNA	2450608	2455276	.	-	.	ID=Os03t0144000-02;Name=Os03t0144000-02;Locus_id=Os03g0144000;RAP-DB Gene Symbol Synonym(s)=MEICA1;RAP-DB Gene Name Synonym(s)=meiotic Chromosome association 1;CGSNL Gene Symbol=MEICA1;CGSNL Gene Name=MEIOTIC CHROMOSOME ASSOCIATION 1;Oryzabase Gene Name Synonym(s)=Meiotic Chromosome Association 1;Note=DUF4487 domain containing protein%2C Regulation of meiotic recombination%2C Prevention of aberrant meiotic recombination%2C Regulation of crossover formation;Transcript_evidence=MF32161;ORF_evidence=Inferred from literature;InterPro=Protein of unknown function DUF4487 (IPR027902);Manual Curation=August 17%2C 2017;Literature_PMID=28696221;Oryzabase=21767
Chr03	irgsp1_rep	CDS	2455181	2455276	.	-	0	Parent=Os03t0144000-02
Chr03	irgsp1_rep	CDS	2454784	2454876	.	-	0	Parent=Os03t0144000-02
Chr03	irgsp1_rep	CDS	2454491	2454625	.	-	0	Parent=Os03t0144000-02
Chr03	irgsp1_rep	CDS	2454263	2454361	.	-	0	Parent=Os03t0144000-02
Chr03	irgsp1_rep	CDS	2453792	2453929	.	-	0	Parent=Os03t0144000-02
Chr03	irgsp1_rep	CDS	2451668	2453286	.	-	0	Parent=Os03t0144000-02
Chr03	irgsp1_rep	CDS	2450608	2451565	.	-	1	Parent=Os03t0144000-02
Chr03	irgsp1_rep	mRNA	2459016	2459570	.	+	.	ID=Os03t0144100-00;Name=Os03t0144100-00;Locus_id=Os03g0144100;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os03t0144100-00;KEGG=Os03t0144100-00
Chr03	irgsp1_rep	CDS	2459016	2459570	.	+	0	Parent=Os03t0144100-00
Chr03	irgsp1_rep	mRNA	2459610	2459843	.	+	.	ID=Os03t0144150-00;Name=Os03t0144150-00;Locus_id=Os03g0144150;Note=Non-protein coding transcript.;Transcript_evidence=CT835211 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os03t0144150-00
Chr03	irgsp1_rep	exon	2459610	2459843	.	+	.	Parent=Os03t0144150-00
Chr03	irgsp1_rep	mRNA	2460733	2462179	.	+	.	ID=Os03t0144200-01;Name=Os03t0144200-01;Locus_id=Os03g0144200;Note=Non-protein coding transcript.;Transcript_evidence=AK071449 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023098C01;TENOR=Os03t0144200-01
Chr03	irgsp1_rep	exon	2460733	2462179	.	+	.	Parent=Os03t0144200-01
Chr03	irgsp1_rep	mRNA	2466460	2468340	.	+	.	ID=Os03t0144300-01;Name=Os03t0144300-01;Locus_id=Os03g0144300;Note=Similar to Xyloglucan galactosyltransferase KATAMARI 1 (EC 2.4.1.-) (MURUS3 protein).;Transcript_evidence=AK073950 (DDBJ%2C Best hit);ORF_evidence=D0V2A6 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);NIAS_FLcDNA=J033072L14;Expression=AK073950;TENOR=Os03t0144300-01;KEGG=Os03t0144300-01
Chr03	irgsp1_rep	five_prime_UTR	2466460	2466563	.	+	.	Parent=Os03t0144300-01
Chr03	irgsp1_rep	CDS	2466564	2468078	.	+	0	Parent=Os03t0144300-01
Chr03	irgsp1_rep	three_prime_UTR	2468079	2468340	.	+	.	Parent=Os03t0144300-01
Chr03	irgsp1_rep	mRNA	2471481	2473021	.	+	.	ID=Os03t0144500-01;Name=Os03t0144500-01;Locus_id=Os03g0144500;Note=Similar to Xyloglucan galactosyltransferase KATAMARI 1 (EC 2.4.1.-) (MURUS3 protein).;Transcript_evidence=AK122034 (DDBJ%2C Best hit);ORF_evidence=B6SS28 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);NIAS_FLcDNA=J033112K10;Expression=AK122034;TENOR=Os03t0144500-01;KEGG=Os03t0144500-01
Chr03	irgsp1_rep	five_prime_UTR	2471481	2471482	.	+	.	Parent=Os03t0144500-01
Chr03	irgsp1_rep	CDS	2471483	2472823	.	+	0	Parent=Os03t0144500-01
Chr03	irgsp1_rep	three_prime_UTR	2472824	2473021	.	+	.	Parent=Os03t0144500-01
Chr03	irgsp1_rep	mRNA	2482205	2483338	.	+	.	ID=Os03t0144700-00;Name=Os03t0144700-00;Locus_id=Os03g0144700;Note=Similar to Histone H2A.;Transcript_evidence=EU946920 (DDBJ);ORF_evidence=Q43214 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H2A (IPR002119),Histone-fold (IPR009072);TENOR=Os03t0144700-00;KEGG=Os03t0144700-00
Chr03	irgsp1_rep	CDS	2482205	2483338	.	+	0	Parent=Os03t0144700-00
Chr03	irgsp1_rep	mRNA	2486920	2489480	.	+	.	ID=Os03t0144800-01;Name=Os03t0144800-01;Locus_id=Os03g0144800;Note=Similar to Xyloglucan galactosyltransferase KATAMARI 1 (EC 2.4.1.-) (MURUS3 protein).;Transcript_evidence=AK103041 (DDBJ%2C Best hit);ORF_evidence=B6SS28 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);NIAS_FLcDNA=J033117F03;Expression=AK103041;TENOR=Os03t0144800-01;KEGG=Os03t0144800-01
Chr03	irgsp1_rep	five_prime_UTR	2486920	2487260	.	+	.	Parent=Os03t0144800-01
Chr03	irgsp1_rep	CDS	2487261	2489075	.	+	0	Parent=Os03t0144800-01
Chr03	irgsp1_rep	three_prime_UTR	2489076	2489480	.	+	.	Parent=Os03t0144800-01
Chr03	irgsp1_rep	mRNA	2492199	2495209	.	+	.	ID=Os03t0144951-00;Name=Os03t0144951-00;Locus_id=Os03g0144951;Note=Similar to BZIP transcription factor ABI5.;Transcript_evidence=EU964768 (DDBJ);ORF_evidence=B4FRB4 (UniProt);TENOR=Os03t0144951-00
Chr03	irgsp1_rep	five_prime_UTR	2492199	2492495	.	+	.	Parent=Os03t0144951-00
Chr03	irgsp1_rep	CDS	2492496	2492608	.	+	0	Parent=Os03t0144951-00
Chr03	irgsp1_rep	CDS	2494960	2495209	.	+	1	Parent=Os03t0144951-00
Chr03	irgsp1_rep	mRNA	2495553	2499016	.	+	.	ID=Os03t0145050-01;Name=Os03t0145050-01;Locus_id=Os03g0145050;Note=Hypothetical gene.;Transcript_evidence=AK241590 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065182N07;TENOR=Os03t0145050-01;KEGG=Os03t0145050-01
Chr03	irgsp1_rep	five_prime_UTR	2495553	2496553	.	+	.	Parent=Os03t0145050-01
Chr03	irgsp1_rep	CDS	2496554	2498098	.	+	0	Parent=Os03t0145050-01
Chr03	irgsp1_rep	three_prime_UTR	2498099	2499016	.	+	.	Parent=Os03t0145050-01
Chr03	irgsp1_rep	mRNA	2494796	2498898	.	-	.	ID=Os03t0145102-00;Name=Os03t0145102-00;Locus_id=Os03g0145102;CGSNL Gene Symbol=RLCK99;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 99;Oryzabase Gene Symbol Synonym(s)=OsRLCK99;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 99;Note=Similar to Leucine Rich Repeat family protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8H037 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18808;TENOR=Os03t0145102-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	2496431	2498898	.	-	0	Parent=Os03t0145102-00
Chr03	irgsp1_rep	CDS	2494796	2495300	.	-	1	Parent=Os03t0145102-00
Chr03	irgsp1_rep	mRNA	2505803	2506940	.	-	.	ID=Os03t0145150-00;Name=Os03t0145150-00;Locus_id=Os03g0145150;Note=Hypothetical gene.;Transcript_evidence=tplb0016n22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0145150-00;KEGG=Os03t0145150-00
Chr03	irgsp1_rep	CDS	2506095	2506940	.	-	0	Parent=Os03t0145150-00
Chr03	irgsp1_rep	three_prime_UTR	2505803	2506094	.	-	.	Parent=Os03t0145150-00
Chr03	irgsp1_rep	mRNA	2506064	2507170	.	+	.	ID=Os03t0145200-01;Name=Os03t0145200-01;Locus_id=Os03g0145200;CGSNL Gene Symbol=GATA4;CGSNL Gene Name=GATA TRANSCRIPTION FACTOR 4;Oryzabase Gene Symbol Synonym(s)=OsGATA4;Oryzabase Gene Name Synonym(s)=GATA transcription factor 4%2C GATA factor 4;Note=Zinc finger%2C NHR/GATA-type domain containing protein.;Transcript_evidence=AK242735 (DDBJ%2C Best hit);ORF_evidence=Q76DY2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Zinc finger%2C GATA-type (IPR000679),Zinc finger%2C NHR/GATA-type (IPR013088);NIAS_FLcDNA=J090048J08;Oryzabase=20489;TENOR=Os03t0145200-01;KEGG=Os03t0145200-01
Chr03	irgsp1_rep	five_prime_UTR	2506064	2506129	.	+	.	Parent=Os03t0145200-01
Chr03	irgsp1_rep	CDS	2506130	2506216	.	+	0	Parent=Os03t0145200-01
Chr03	irgsp1_rep	CDS	2506317	2506889	.	+	0	Parent=Os03t0145200-01
Chr03	irgsp1_rep	three_prime_UTR	2506890	2507170	.	+	.	Parent=Os03t0145200-01
Chr03	irgsp1_rep	mRNA	2512872	2516234	.	+	.	ID=Os03t0145300-01;Name=Os03t0145300-01;Locus_id=Os03g0145300;Note=Glycosyl transferase%2C family 14 domain containing protein.;Transcript_evidence=AK110150 (DDBJ%2C Best hit);ORF_evidence=Q10RU9 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: acetylglucosaminyltransferase activity (GO:0008375);InterPro=Glycosyl transferase%2C family 14 (IPR003406);NIAS_FLcDNA=002-161-E04;TENOR=Os03t0145300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	2512872	2512948	.	+	.	Parent=Os03t0145300-01
Chr03	irgsp1_rep	CDS	2512949	2513279	.	+	0	Parent=Os03t0145300-01
Chr03	irgsp1_rep	CDS	2513823	2514313	.	+	2	Parent=Os03t0145300-01
Chr03	irgsp1_rep	three_prime_UTR	2514314	2516234	.	+	.	Parent=Os03t0145300-01
Chr03	irgsp1_rep	mRNA	2516859	2525960	.	-	.	ID=Os03t0145500-01;Name=Os03t0145500-01;Locus_id=Os03g0145500;Note=DENN domain containing protein.;Transcript_evidence=AK066503 (DDBJ%2C Best hit);ORF_evidence=Q10RU7 (UniProt);InterPro=DENN (IPR001194),dDENN (IPR005112),uDENN (IPR005113);NIAS_FLcDNA=J013074H13;Expression=AK066503;TENOR=Os03t0145500-01;KEGG=Os03t0145500-01
Chr03	irgsp1_rep	five_prime_UTR	2525881	2525960	.	-	.	Parent=Os03t0145500-01
Chr03	irgsp1_rep	CDS	2525173	2525880	.	-	0	Parent=Os03t0145500-01
Chr03	irgsp1_rep	CDS	2524334	2524531	.	-	0	Parent=Os03t0145500-01
Chr03	irgsp1_rep	CDS	2524071	2524154	.	-	0	Parent=Os03t0145500-01
Chr03	irgsp1_rep	CDS	2523236	2523295	.	-	0	Parent=Os03t0145500-01
Chr03	irgsp1_rep	CDS	2522925	2522969	.	-	0	Parent=Os03t0145500-01
Chr03	irgsp1_rep	CDS	2522628	2522827	.	-	0	Parent=Os03t0145500-01
Chr03	irgsp1_rep	CDS	2521989	2522492	.	-	1	Parent=Os03t0145500-01
Chr03	irgsp1_rep	CDS	2521711	2521804	.	-	1	Parent=Os03t0145500-01
Chr03	irgsp1_rep	CDS	2521428	2521619	.	-	0	Parent=Os03t0145500-01
Chr03	irgsp1_rep	CDS	2521261	2521350	.	-	0	Parent=Os03t0145500-01
Chr03	irgsp1_rep	CDS	2520188	2520250	.	-	0	Parent=Os03t0145500-01
Chr03	irgsp1_rep	CDS	2520018	2520092	.	-	0	Parent=Os03t0145500-01
Chr03	irgsp1_rep	CDS	2519207	2519257	.	-	0	Parent=Os03t0145500-01
Chr03	irgsp1_rep	CDS	2518976	2519053	.	-	0	Parent=Os03t0145500-01
Chr03	irgsp1_rep	CDS	2518338	2518472	.	-	0	Parent=Os03t0145500-01
Chr03	irgsp1_rep	CDS	2518043	2518150	.	-	0	Parent=Os03t0145500-01
Chr03	irgsp1_rep	CDS	2517894	2517959	.	-	0	Parent=Os03t0145500-01
Chr03	irgsp1_rep	CDS	2517372	2517446	.	-	0	Parent=Os03t0145500-01
Chr03	irgsp1_rep	three_prime_UTR	2516859	2517371	.	-	.	Parent=Os03t0145500-01
Chr03	irgsp1_rep	mRNA	2528998	2530420	.	-	.	ID=Os03t0145600-01;Name=Os03t0145600-01;Locus_id=Os03g0145600;Oryzabase Gene Symbol Synonym(s)=OsWD40-62;Note=WD40/YVTN repeat-like domain containing protein.;Transcript_evidence=AK106243 (DDBJ%2C Best hit);ORF_evidence=Q947X5 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571),WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=002-100-D01;Oryzabase=10743;Expression=AK106243;TENOR=Os03t0145600-01;KEGG=Os03t0145600-01
Chr03	irgsp1_rep	five_prime_UTR	2530404	2530420	.	-	.	Parent=Os03t0145600-01
Chr03	irgsp1_rep	CDS	2529120	2530403	.	-	0	Parent=Os03t0145600-01
Chr03	irgsp1_rep	three_prime_UTR	2528998	2529119	.	-	.	Parent=Os03t0145600-01
Chr03	irgsp1_rep	mRNA	2531001	2533387	.	+	.	ID=Os03t0145700-01;Name=Os03t0145700-01;Locus_id=Os03g0145700;Note=Hypothetical conserved gene.;Transcript_evidence=AK065716 (DDBJ%2C Best hit);ORF_evidence=B8ANA7 (UniProt);NIAS_FLcDNA=J013039F14;Expression=AK065716;TENOR=Os03t0145700-01;KEGG=Os03t0145700-01
Chr03	irgsp1_rep	five_prime_UTR	2531001	2531042	.	+	.	Parent=Os03t0145700-01
Chr03	irgsp1_rep	CDS	2531043	2531327	.	+	0	Parent=Os03t0145700-01
Chr03	irgsp1_rep	CDS	2531411	2531449	.	+	0	Parent=Os03t0145700-01
Chr03	irgsp1_rep	three_prime_UTR	2531450	2531496	.	+	.	Parent=Os03t0145700-01
Chr03	irgsp1_rep	three_prime_UTR	2531603	2532188	.	+	.	Parent=Os03t0145700-01
Chr03	irgsp1_rep	three_prime_UTR	2532317	2532357	.	+	.	Parent=Os03t0145700-01
Chr03	irgsp1_rep	three_prime_UTR	2532465	2533387	.	+	.	Parent=Os03t0145700-01
Chr03	irgsp1_rep	mRNA	2531008	2537847	.	+	.	ID=Os03t0145700-02;Name=Os03t0145700-02;Locus_id=Os03g0145700;Note=Conserved hypothetical protein.;Transcript_evidence=AK102483 (DDBJ%2C Best hit);ORF_evidence=B9FB18 (UniProt);NIAS_FLcDNA=J033094L18;Expression=AK102483;TENOR=Os03t0145700-02;KEGG=Os03t0145700-02
Chr03	irgsp1_rep	five_prime_UTR	2531008	2531327	.	+	.	Parent=Os03t0145700-02
Chr03	irgsp1_rep	five_prime_UTR	2531411	2531496	.	+	.	Parent=Os03t0145700-02
Chr03	irgsp1_rep	five_prime_UTR	2531603	2531637	.	+	.	Parent=Os03t0145700-02
Chr03	irgsp1_rep	five_prime_UTR	2532106	2532188	.	+	.	Parent=Os03t0145700-02
Chr03	irgsp1_rep	five_prime_UTR	2532317	2532357	.	+	.	Parent=Os03t0145700-02
Chr03	irgsp1_rep	five_prime_UTR	2532465	2533179	.	+	.	Parent=Os03t0145700-02
Chr03	irgsp1_rep	five_prime_UTR	2533834	2534161	.	+	.	Parent=Os03t0145700-02
Chr03	irgsp1_rep	CDS	2534162	2534543	.	+	0	Parent=Os03t0145700-02
Chr03	irgsp1_rep	CDS	2534631	2534792	.	+	2	Parent=Os03t0145700-02
Chr03	irgsp1_rep	CDS	2535113	2535153	.	+	2	Parent=Os03t0145700-02
Chr03	irgsp1_rep	CDS	2535268	2535299	.	+	0	Parent=Os03t0145700-02
Chr03	irgsp1_rep	CDS	2537524	2537680	.	+	1	Parent=Os03t0145700-02
Chr03	irgsp1_rep	three_prime_UTR	2537681	2537847	.	+	.	Parent=Os03t0145700-02
Chr03	irgsp1_rep	mRNA	2534050	2534463	.	-	.	ID=Os03t0145751-00;Name=Os03t0145751-00;Locus_id=Os03g0145751;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os03t0145751-00;KEGG=Os03t0145751-00
Chr03	irgsp1_rep	CDS	2534050	2534463	.	-	0	Parent=Os03t0145751-00
Chr03	irgsp1_rep	mRNA	2542773	2543266	.	-	.	ID=Os03t0145775-01;Name=Os03t0145775-01;Locus_id=Os03g0145775;Note=Conserved hypothetical protein.;Transcript_evidence=AK242504 (DDBJ%2C Best hit);ORF_evidence=Q947X8 (UniProt);NIAS_FLcDNA=J080309M14;TENOR=Os03t0145775-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	2543265	2543266	.	-	.	Parent=Os03t0145775-01
Chr03	irgsp1_rep	CDS	2542926	2543264	.	-	0	Parent=Os03t0145775-01
Chr03	irgsp1_rep	three_prime_UTR	2542773	2542925	.	-	.	Parent=Os03t0145775-01
Chr03	irgsp1_rep	mRNA	2543686	2546338	.	-	.	ID=Os03t0145800-01;Name=Os03t0145800-01;Locus_id=Os03g0145800;Note=Ankyrin repeat containing protein.;Transcript_evidence=AK065520 (DDBJ%2C Best hit);ORF_evidence=B6UDX0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J013026K01;Expression=AK065520;TENOR=Os03t0145800-01;KEGG=Os03t0145800-01 (EC:6.3.2.19)
Chr03	irgsp1_rep	five_prime_UTR	2544648	2546338	.	-	.	Parent=Os03t0145800-01
Chr03	irgsp1_rep	CDS	2544543	2544647	.	-	0	Parent=Os03t0145800-01
Chr03	irgsp1_rep	CDS	2544394	2544472	.	-	0	Parent=Os03t0145800-01
Chr03	irgsp1_rep	CDS	2544204	2544301	.	-	2	Parent=Os03t0145800-01
Chr03	irgsp1_rep	CDS	2543925	2544110	.	-	0	Parent=Os03t0145800-01
Chr03	irgsp1_rep	three_prime_UTR	2543686	2543924	.	-	.	Parent=Os03t0145800-01
Chr03	irgsp1_rep	mRNA	2543680	2544274	.	-	.	ID=Os03t0145800-02;Name=Os03t0145800-02;Locus_id=Os03g0145800;Note=Similar to tankyrase 1.;Transcript_evidence=AK062087 (DDBJ%2C Best hit);ORF_evidence=B6UDX0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=001-044-G06;Expression=AK062087;TENOR=Os03t0145800-02;KEGG=Os03t0145800-02
Chr03	irgsp1_rep	five_prime_UTR	2544273	2544274	.	-	.	Parent=Os03t0145800-02
Chr03	irgsp1_rep	CDS	2544204	2544272	.	-	0	Parent=Os03t0145800-02
Chr03	irgsp1_rep	CDS	2543925	2544110	.	-	0	Parent=Os03t0145800-02
Chr03	irgsp1_rep	three_prime_UTR	2543680	2543924	.	-	.	Parent=Os03t0145800-02
Chr03	irgsp1_rep	mRNA	2548699	2552574	.	+	.	ID=Os03t0145900-01;Name=Os03t0145900-01;Locus_id=Os03g0145900;Note=Similar to CHY zinc finger family protein%2C expressed.;Transcript_evidence=AK120297 (DDBJ%2C Best hit);ORF_evidence=Q10RT9 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CHY-type (IPR008913);NIAS_FLcDNA=J013051O08;Oryzabase=19590;TENOR=Os03t0145900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	2548699	2548890	.	+	.	Parent=Os03t0145900-01
Chr03	irgsp1_rep	five_prime_UTR	2549171	2549236	.	+	.	Parent=Os03t0145900-01
Chr03	irgsp1_rep	CDS	2549237	2549268	.	+	0	Parent=Os03t0145900-01
Chr03	irgsp1_rep	CDS	2549385	2549472	.	+	1	Parent=Os03t0145900-01
Chr03	irgsp1_rep	CDS	2549567	2549872	.	+	0	Parent=Os03t0145900-01
Chr03	irgsp1_rep	three_prime_UTR	2549873	2550897	.	+	.	Parent=Os03t0145900-01
Chr03	irgsp1_rep	three_prime_UTR	2551026	2551103	.	+	.	Parent=Os03t0145900-01
Chr03	irgsp1_rep	three_prime_UTR	2551228	2551268	.	+	.	Parent=Os03t0145900-01
Chr03	irgsp1_rep	three_prime_UTR	2551353	2551396	.	+	.	Parent=Os03t0145900-01
Chr03	irgsp1_rep	three_prime_UTR	2551480	2551562	.	+	.	Parent=Os03t0145900-01
Chr03	irgsp1_rep	three_prime_UTR	2551649	2551740	.	+	.	Parent=Os03t0145900-01
Chr03	irgsp1_rep	three_prime_UTR	2551824	2551893	.	+	.	Parent=Os03t0145900-01
Chr03	irgsp1_rep	three_prime_UTR	2552001	2552042	.	+	.	Parent=Os03t0145900-01
Chr03	irgsp1_rep	three_prime_UTR	2552132	2552574	.	+	.	Parent=Os03t0145900-01
Chr03	irgsp1_rep	mRNA	2553395	2553589	.	+	.	ID=Os03t0145950-00;Name=Os03t0145950-00;Locus_id=Os03g0145950;Note=Non-protein coding transcript.;Transcript_evidence=AK370789 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0145950-00
Chr03	irgsp1_rep	exon	2553395	2553589	.	+	.	Parent=Os03t0145950-00
Chr03	irgsp1_rep	mRNA	2553889	2559108	.	+	.	ID=Os03t0146000-01;Name=Os03t0146000-01;Locus_id=Os03g0146000;Oryzabase Gene Symbol Synonym(s)=OsRab18B2%2C Q10RT8;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab18B2%2C Ras-related protein RAB-18;Note=Similar to RAB1X.;Transcript_evidence=AK061250 (DDBJ%2C Best hit),AK099130 (DDBJ%2C Best hit);ORF_evidence=NP_001150695.1 (RefSeq);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: intracellular protein transport (GO:0006886),Biological Process: nucleocytoplasmic transport (GO:0006913),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Cellular Component: membrane (GO:0016020),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Ran GTPase (IPR002041),Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C Ras type (IPR020849),Small GTPase superfamily%2C ARF type (IPR024156);NIAS_FLcDNA=006-211-F09,J023043D11;Oryzabase=11112;TENOR=Os03t0146000-01
Chr03	irgsp1_rep	five_prime_UTR	2553889	2554012	.	+	.	Parent=Os03t0146000-01
Chr03	irgsp1_rep	CDS	2554013	2554151	.	+	0	Parent=Os03t0146000-01
Chr03	irgsp1_rep	CDS	2555104	2555172	.	+	2	Parent=Os03t0146000-01
Chr03	irgsp1_rep	CDS	2555523	2555588	.	+	2	Parent=Os03t0146000-01
Chr03	irgsp1_rep	CDS	2556192	2556313	.	+	2	Parent=Os03t0146000-01
Chr03	irgsp1_rep	CDS	2556714	2556842	.	+	0	Parent=Os03t0146000-01
Chr03	irgsp1_rep	CDS	2558675	2558782	.	+	0	Parent=Os03t0146000-01
Chr03	irgsp1_rep	three_prime_UTR	2558783	2559108	.	+	.	Parent=Os03t0146000-01
Chr03	irgsp1_rep	mRNA	2562812	2564646	.	-	.	ID=Os03t0146100-01;Name=Os03t0146100-01;Locus_id=Os03g0146100;CGSNL Gene Symbol=TIP1%3B1;CGSNL Gene Name=TONOPLAST INTRINSIC PROTEIN 1%3B1;Oryzabase Gene Symbol Synonym(s)=OsTIP1%3B1%2C TIP1-1%2C rTIP1;Oryzabase Gene Name Synonym(s)=tonoplast intrinsic protein 1%3B1%2C Probable aquaporin TIP1-1%2C Tonoplast intrinsic protein 1-1%2C rice Tip 1%2C tonoplast intrinsic protein 1;Note=Tonoplast intrinsic protein (Tonoplast water channel).;Transcript_evidence=AK068986 (DDBJ%2C Best hit),AK058322 (DDBJ%2C Best hit),AK104123 (DDBJ%2C Best hit);ORF_evidence=NP_001104896.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Major intrinsic protein%2C conserved site (IPR022357),Aquaporin-like (IPR023271);NIAS_FLcDNA=J023003E16,001-014-B06,006-203-C12;Oryzabase=7313;Expression=AK068986;TENOR=Os03t0146100-01;KEGG=Os03t0146100-01
Chr03	irgsp1_rep	five_prime_UTR	2564559	2564646	.	-	.	Parent=Os03t0146100-01
Chr03	irgsp1_rep	CDS	2564426	2564558	.	-	0	Parent=Os03t0146100-01
Chr03	irgsp1_rep	CDS	2563052	2563671	.	-	2	Parent=Os03t0146100-01
Chr03	irgsp1_rep	three_prime_UTR	2562812	2563051	.	-	.	Parent=Os03t0146100-01
Chr03	irgsp1_rep	mRNA	2562858	2564643	.	-	.	ID=Os03t0146100-03;Name=Os03t0146100-03;Locus_id=Os03g0146100;CGSNL Gene Symbol=TIP1%3B1;CGSNL Gene Name=TONOPLAST INTRINSIC PROTEIN 1%3B1;Oryzabase Gene Symbol Synonym(s)=OsTIP1%3B1%2C TIP1-1%2C rTIP1;Oryzabase Gene Name Synonym(s)=tonoplast intrinsic protein 1%3B1%2C Probable aquaporin TIP1-1%2C Tonoplast intrinsic protein 1-1%2C rice Tip 1%2C tonoplast intrinsic protein 1;Note=Similar to Tonoplast intrinsic protein.;Transcript_evidence=AK060994 (DDBJ%2C Best hit);ORF_evidence=A4ZYN4 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Major intrinsic protein%2C conserved site (IPR022357),Aquaporin-like (IPR023271);NIAS_FLcDNA=006-203-E02;Oryzabase=7313;Expression=AK060994;TENOR=Os03t0146100-03;KEGG=Os03t0146100-03
Chr03	irgsp1_rep	five_prime_UTR	2564559	2564643	.	-	.	Parent=Os03t0146100-03
Chr03	irgsp1_rep	CDS	2564426	2564558	.	-	0	Parent=Os03t0146100-03
Chr03	irgsp1_rep	CDS	2563298	2563671	.	-	2	Parent=Os03t0146100-03
Chr03	irgsp1_rep	CDS	2563052	2563135	.	-	0	Parent=Os03t0146100-03
Chr03	irgsp1_rep	three_prime_UTR	2562858	2563051	.	-	.	Parent=Os03t0146100-03
Chr03	irgsp1_rep	mRNA	2562867	2563417	.	-	.	ID=Os03t0146100-05;Name=Os03t0146100-05;Locus_id=Os03g0146100;CGSNL Gene Symbol=TIP1%3B1;CGSNL Gene Name=TONOPLAST INTRINSIC PROTEIN 1%3B1;Oryzabase Gene Symbol Synonym(s)=OsTIP1%3B1%2C TIP1-1%2C rTIP1;Oryzabase Gene Name Synonym(s)=tonoplast intrinsic protein 1%3B1%2C Probable aquaporin TIP1-1%2C Tonoplast intrinsic protein 1-1%2C rice Tip 1%2C tonoplast intrinsic protein 1;Note=Similar to cDNA clone:001-014-B06%2C full insert sequence.;Transcript_evidence=AK059438 (DDBJ%2C Best hit);ORF_evidence=A4ZYN4 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Aquaporin-like (IPR023271);NIAS_FLcDNA=001-027-G11;Oryzabase=7313;Expression=AK059438;TENOR=Os03t0146100-05;KEGG=Os03t0146100-05
Chr03	irgsp1_rep	CDS	2563052	2563417	.	-	0	Parent=Os03t0146100-05
Chr03	irgsp1_rep	three_prime_UTR	2562867	2563051	.	-	.	Parent=Os03t0146100-05
Chr03	irgsp1_rep	mRNA	2562873	2564200	.	+	.	ID=Os03t0146200-01;Name=Os03t0146200-01;Locus_id=Os03g0146200;Note=Conserved hypothetical protein.;Transcript_evidence=AK110727 (DDBJ%2C Best hit);ORF_evidence=C0P955 (UniProt);NIAS_FLcDNA=002-170-E06;TENOR=Os03t0146200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	2562873	2563090	.	+	.	Parent=Os03t0146200-01
Chr03	irgsp1_rep	five_prime_UTR	2563133	2563133	.	+	.	Parent=Os03t0146200-01
Chr03	irgsp1_rep	CDS	2563134	2563340	.	+	0	Parent=Os03t0146200-01
Chr03	irgsp1_rep	three_prime_UTR	2563341	2563726	.	+	.	Parent=Os03t0146200-01
Chr03	irgsp1_rep	three_prime_UTR	2563990	2564200	.	+	.	Parent=Os03t0146200-01
Chr03	irgsp1_rep	mRNA	2571794	2572787	.	+	.	ID=Os03t0146300-01;Name=Os03t0146300-01;Locus_id=Os03g0146300;Oryzabase Gene Symbol Synonym(s)=Orysa%3BCKS1;Oryzabase Gene Name Synonym(s)=CDK subunit protein 1;Note=Similar to Cyclin-dependent kinases regulatory subunit.;Transcript_evidence=AK121395 (DDBJ%2C Best hit);ORF_evidence=Q6PS57 (UniProt);GO=Biological Process: cell cycle (GO:0007049),Molecular Function: cyclin-dependent protein kinase regulator activity (GO:0016538);InterPro=Cyclin-dependent kinase%2C regulatory subunit (IPR000789);NIAS_FLcDNA=J023130M16;Oryzabase=13309;Expression=AK121395;TENOR=Os03t0146300-01;KEGG=Os03t0146300-01
Chr03	irgsp1_rep	five_prime_UTR	2571794	2571880	.	+	.	Parent=Os03t0146300-01
Chr03	irgsp1_rep	five_prime_UTR	2572035	2572062	.	+	.	Parent=Os03t0146300-01
Chr03	irgsp1_rep	CDS	2572063	2572115	.	+	0	Parent=Os03t0146300-01
Chr03	irgsp1_rep	CDS	2572203	2572263	.	+	1	Parent=Os03t0146300-01
Chr03	irgsp1_rep	CDS	2572376	2572534	.	+	0	Parent=Os03t0146300-01
Chr03	irgsp1_rep	three_prime_UTR	2572535	2572787	.	+	.	Parent=Os03t0146300-01
Chr03	irgsp1_rep	mRNA	2576609	2580404	.	+	.	ID=Os03t0146400-01;Name=Os03t0146400-01;Locus_id=Os03g0146400;RAP-DB Gene Symbol Synonym(s)=OsPAO%2C PAO;RAP-DB Gene Name Synonym(s)=Pheophorbide a oxygenase;CGSNL Gene Symbol=ACD1;CGSNL Gene Name=ACCELERATED CELL-DEATH 1;Oryzabase Gene Symbol Synonym(s)=OsPAO%2C PAO%2C OsACD1;Oryzabase Gene Name Synonym(s)=Pheophorbide a oxygenase%2C accelerated cell-death 1;Note=Pheophorbide a oxygenase%2C Leaf senescence%2C Wound responses;Transcript_evidence=AK111974;ORF_evidence=Q0DV66;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: chlorophyllide a oxygenase [overall] activity (GO:0010277),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=Rieske [2Fe-2S] iron-sulphur domain (IPR017941),Pheophorbide a oxygenase (IPR013626);NIAS_FLcDNA=001-003-D01;Manual Curation=May 26%2C 2017;Literature_PMID=21807436;Oryzabase=14754;Expression=AK111974;TENOR=Os03t0146400-01;KEGG=Os03t0146400-01 (EC:1.14.15.17)
Chr03	irgsp1_rep	five_prime_UTR	2576609	2576929	.	+	.	Parent=Os03t0146400-01
Chr03	irgsp1_rep	CDS	2576930	2577325	.	+	0	Parent=Os03t0146400-01
Chr03	irgsp1_rep	CDS	2577427	2577662	.	+	0	Parent=Os03t0146400-01
Chr03	irgsp1_rep	CDS	2577750	2577876	.	+	1	Parent=Os03t0146400-01
Chr03	irgsp1_rep	CDS	2578403	2578539	.	+	0	Parent=Os03t0146400-01
Chr03	irgsp1_rep	CDS	2578680	2578839	.	+	1	Parent=Os03t0146400-01
Chr03	irgsp1_rep	CDS	2579041	2579319	.	+	0	Parent=Os03t0146400-01
Chr03	irgsp1_rep	CDS	2579963	2580217	.	+	0	Parent=Os03t0146400-01
Chr03	irgsp1_rep	three_prime_UTR	2580218	2580404	.	+	.	Parent=Os03t0146400-01
Chr03	irgsp1_rep	mRNA	2576653	2580404	.	+	.	ID=Os03t0146400-02;Name=Os03t0146400-02;Locus_id=Os03g0146400;CGSNL Gene Symbol=ACD1;CGSNL Gene Name=ACCELERATED CELL-DEATH 1;Oryzabase Gene Symbol Synonym(s)=OsPAO%2C PAO%2C OsACD1;Oryzabase Gene Name Synonym(s)=Pheophorbide a oxygenase%2C accelerated cell-death 1;Note=Similar to Lethal leaf-spot 1 (Fragment).;Transcript_evidence=AK120554 (DDBJ%2C Best hit);ORF_evidence=O04127 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: chlorophyllide a oxygenase [overall] activity (GO:0010277),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=Pheophorbide a oxygenase (IPR013626),Rieske [2Fe-2S] iron-sulphur domain (IPR017941);NIAS_FLcDNA=J013130M21;Oryzabase=14754;Expression=AK120554;TENOR=Os03t0146400-02;KEGG=Os03t0146400-02
Chr03	irgsp1_rep	five_prime_UTR	2576653	2576929	.	+	.	Parent=Os03t0146400-02
Chr03	irgsp1_rep	CDS	2576930	2577325	.	+	0	Parent=Os03t0146400-02
Chr03	irgsp1_rep	CDS	2577427	2577662	.	+	0	Parent=Os03t0146400-02
Chr03	irgsp1_rep	CDS	2577750	2577876	.	+	1	Parent=Os03t0146400-02
Chr03	irgsp1_rep	CDS	2578403	2578539	.	+	0	Parent=Os03t0146400-02
Chr03	irgsp1_rep	CDS	2578680	2578839	.	+	1	Parent=Os03t0146400-02
Chr03	irgsp1_rep	CDS	2579041	2579319	.	+	0	Parent=Os03t0146400-02
Chr03	irgsp1_rep	CDS	2579963	2580217	.	+	0	Parent=Os03t0146400-02
Chr03	irgsp1_rep	three_prime_UTR	2580218	2580404	.	+	.	Parent=Os03t0146400-02
Chr03	irgsp1_rep	mRNA	2581186	2583486	.	+	.	ID=Os03t0146500-01;Name=Os03t0146500-01;Locus_id=Os03g0146500;Note=Similar to (RAP Annotation release2) Galactose-binding like domain containing protein.;Transcript_evidence=AK071628 (DDBJ%2C Best hit);ORF_evidence=B7E421 (UniProt);InterPro=Protein of unknown function DUF1997 (IPR018971);NIAS_FLcDNA=J023107C08;Expression=AK071628;TENOR=Os03t0146500-01;KEGG=Os03t0146500-01
Chr03	irgsp1_rep	five_prime_UTR	2581186	2581617	.	+	.	Parent=Os03t0146500-01
Chr03	irgsp1_rep	CDS	2581618	2581800	.	+	0	Parent=Os03t0146500-01
Chr03	irgsp1_rep	CDS	2581895	2581940	.	+	0	Parent=Os03t0146500-01
Chr03	irgsp1_rep	CDS	2582379	2582389	.	+	2	Parent=Os03t0146500-01
Chr03	irgsp1_rep	three_prime_UTR	2582390	2582494	.	+	.	Parent=Os03t0146500-01
Chr03	irgsp1_rep	three_prime_UTR	2582589	2582705	.	+	.	Parent=Os03t0146500-01
Chr03	irgsp1_rep	three_prime_UTR	2583178	2583486	.	+	.	Parent=Os03t0146500-01
Chr03	irgsp1_rep	mRNA	2581205	2583481	.	+	.	ID=Os03t0146500-02;Name=Os03t0146500-02;Locus_id=Os03g0146500;Note=Galactose-binding like domain containing protein.;Transcript_evidence=AK104105 (DDBJ%2C Best hit),AK059776 (DDBJ%2C Best hit),AK104220 (DDBJ%2C Best hit);ORF_evidence=Q947Y3 (UniProt);InterPro=Protein of unknown function DUF1997 (IPR018971);NIAS_FLcDNA=006-202-C02,006-204-A11,006-306-E01;Expression=AK104105;TENOR=Os03t0146500-02;KEGG=Os03t0146500-02
Chr03	irgsp1_rep	five_prime_UTR	2581205	2581285	.	+	.	Parent=Os03t0146500-02
Chr03	irgsp1_rep	CDS	2581286	2581469	.	+	0	Parent=Os03t0146500-02
Chr03	irgsp1_rep	CDS	2581610	2581800	.	+	2	Parent=Os03t0146500-02
Chr03	irgsp1_rep	CDS	2581895	2581940	.	+	0	Parent=Os03t0146500-02
Chr03	irgsp1_rep	CDS	2582412	2582494	.	+	2	Parent=Os03t0146500-02
Chr03	irgsp1_rep	CDS	2582589	2582705	.	+	0	Parent=Os03t0146500-02
Chr03	irgsp1_rep	CDS	2583178	2583249	.	+	0	Parent=Os03t0146500-02
Chr03	irgsp1_rep	three_prime_UTR	2583250	2583481	.	+	.	Parent=Os03t0146500-02
Chr03	irgsp1_rep	mRNA	2605032	2605475	.	+	.	ID=Os03t0146600-01;Name=Os03t0146600-01;Locus_id=Os03g0146600;Note=Similar to HEAT repeat family protein%2C expressed.;Transcript_evidence=AK062333 (DDBJ%2C Best hit);ORF_evidence=Q10RT3 (UniProt);NIAS_FLcDNA=001-101-D12;Expression=AK062333;TENOR=Os03t0146600-01;KEGG=Os03t0146600-01
Chr03	irgsp1_rep	five_prime_UTR	2605032	2605033	.	+	.	Parent=Os03t0146600-01
Chr03	irgsp1_rep	CDS	2605034	2605234	.	+	0	Parent=Os03t0146600-01
Chr03	irgsp1_rep	three_prime_UTR	2605235	2605475	.	+	.	Parent=Os03t0146600-01
Chr03	irgsp1_rep	mRNA	2609009	2609572	.	+	.	ID=Os03t0146800-01;Name=Os03t0146800-01;Locus_id=Os03g0146800;CGSNL Gene Symbol=IPS1;CGSNL Gene Name=INDUCED BY PHOSPHATE STARVATION 1;Oryzabase Gene Symbol Synonym(s)=OsIPS1%2C IPS1;Oryzabase Gene Name Synonym(s)=induced by phosphate starvation 1%2C Phosphate starvation 1;Note=Non-protein coding transcript.;Transcript_evidence=AK063904 (DDBJ%2C Best hit),AK121746 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-122-H10,J033086J24;Oryzabase=9626;TENOR=Os03t0146800-01
Chr03	irgsp1_rep	exon	2609009	2609572	.	+	.	Parent=Os03t0146800-01
Chr03	irgsp1_rep	mRNA	2609710	2611671	.	-	.	ID=Os03t0146900-00;Name=Os03t0146900-00;Locus_id=Os03g0146900;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10RT2 (UniProt);TENOR=Os03t0146900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	2610874	2611671	.	-	0	Parent=Os03t0146900-00
Chr03	irgsp1_rep	CDS	2610635	2610778	.	-	0	Parent=Os03t0146900-00
Chr03	irgsp1_rep	CDS	2610259	2610483	.	-	0	Parent=Os03t0146900-00
Chr03	irgsp1_rep	CDS	2609710	2609754	.	-	0	Parent=Os03t0146900-00
Chr03	irgsp1_rep	mRNA	2613684	2615443	.	-	.	ID=Os03t0147001-00;Name=Os03t0147001-00;Locus_id=Os03g0147001;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0057k03 (Wheat FLcDNA);ORF_evidence=A2XCI3 (UniProt);TENOR=Os03t0147001-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	2615282	2615443	.	-	.	Parent=Os03t0147001-00
Chr03	irgsp1_rep	CDS	2614730	2615281	.	-	0	Parent=Os03t0147001-00
Chr03	irgsp1_rep	three_prime_UTR	2614339	2614729	.	-	.	Parent=Os03t0147001-00
Chr03	irgsp1_rep	three_prime_UTR	2614019	2614246	.	-	.	Parent=Os03t0147001-00
Chr03	irgsp1_rep	three_prime_UTR	2613684	2613952	.	-	.	Parent=Os03t0147001-00
Chr03	irgsp1_rep	mRNA	2626993	2628503	.	-	.	ID=Os03t0147150-00;Name=Os03t0147150-00;Locus_id=Os03g0147150;Note=Similar to UDP-glucose 6-dehydrogenase.;Transcript_evidence=AK101692 (DDBJ%2C Secondary hit);ORF_evidence=NP_001151861.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: NAD binding (GO:0051287);InterPro=UDP-glucose/GDP-mannose dehydrogenase%2C N-terminal (IPR001732),NAD(P)-binding domain (IPR016040);Expression=AK101692;TENOR=Os03t0147150-00;KEGG=Os03t0147150-00 (EC:1.1.1.22)
Chr03	irgsp1_rep	five_prime_UTR	2628493	2628503	.	-	.	Parent=Os03t0147150-00
Chr03	irgsp1_rep	CDS	2628439	2628492	.	-	0	Parent=Os03t0147150-00
Chr03	irgsp1_rep	CDS	2627908	2628413	.	-	0	Parent=Os03t0147150-00
Chr03	irgsp1_rep	CDS	2627714	2627888	.	-	1	Parent=Os03t0147150-00
Chr03	irgsp1_rep	three_prime_UTR	2626993	2627713	.	-	.	Parent=Os03t0147150-00
Chr03	irgsp1_rep	mRNA	2651951	2661701	.	-	.	ID=Os03t0147400-01;Name=Os03t0147400-01;Locus_id=Os03g0147400;RAP-DB Gene Symbol Synonym(s)=Z3;RAP-DB Gene Name Synonym(s)=zebra3;CGSNL Gene Symbol=Z3;CGSNL Gene Name=ZEBRA 3;Oryzabase Gene Symbol Synonym(s)=OsZ3%2C z3%2C SIET4%2C OsSIET4;Oryzabase Gene Name Synonym(s)=zebra3%2C zebra 3%2C zebra-3%2C silicon efflux transporter 4%2C Si efflux transporter 4;Note=Putative citrate transporter%2C Citrate-metal hydrogen symport (CitMHS) family protein%2C Citrate transport and distribution during leaf development;Transcript_evidence=AK071480;ORF_evidence=Q10RS7;GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral component of membrane (GO:0016021);InterPro=Citrate transporter-like domain (IPR004680);NIAS_FLcDNA=J023091E03;Manual Curation=December 24%2C 2019;Literature_PMID=29305728;Oryzabase=548;Expression=AK071480;TENOR=Os03t0147400-01;KEGG=Os03t0147400-01;Subcellular location=plasma membrane (GO:0005886)
Chr03	irgsp1_rep	five_prime_UTR	2661472	2661701	.	-	.	Parent=Os03t0147400-01
Chr03	irgsp1_rep	five_prime_UTR	2654795	2654802	.	-	.	Parent=Os03t0147400-01
Chr03	irgsp1_rep	five_prime_UTR	2654285	2654529	.	-	.	Parent=Os03t0147400-01
Chr03	irgsp1_rep	CDS	2653070	2654284	.	-	0	Parent=Os03t0147400-01
Chr03	irgsp1_rep	CDS	2652784	2652973	.	-	0	Parent=Os03t0147400-01
Chr03	irgsp1_rep	CDS	2652405	2652673	.	-	2	Parent=Os03t0147400-01
Chr03	irgsp1_rep	three_prime_UTR	2651951	2652404	.	-	.	Parent=Os03t0147400-01
Chr03	irgsp1_rep	mRNA	2652072	2654022	.	-	.	ID=Os03t0147400-02;Name=Os03t0147400-02;Locus_id=Os03g0147400;CGSNL Gene Symbol=Z3;CGSNL Gene Name=ZEBRA 3;Oryzabase Gene Symbol Synonym(s)=OsZ3%2C z3%2C SIET4%2C OsSIET4;Oryzabase Gene Name Synonym(s)=zebra3%2C zebra 3%2C zebra-3%2C silicon efflux transporter 4%2C Si efflux transporter 4;Note=Similar to cDNA clone:J023091E03%2C full insert sequence.;Transcript_evidence=AK062160 (DDBJ%2C Best hit);ORF_evidence=B6U1B5 (UniProt);GO=Biological Process: citrate transport (GO:0015746),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: citrate transmembrane transporter activity (GO:0015137);InterPro=Divalent ion symporter (IPR004680);NIAS_FLcDNA=001-046-A12;Oryzabase=548;Expression=AK062160;TENOR=Os03t0147400-02;KEGG=Os03t0147400-02
Chr03	irgsp1_rep	five_prime_UTR	2654021	2654022	.	-	.	Parent=Os03t0147400-02
Chr03	irgsp1_rep	CDS	2653070	2654020	.	-	0	Parent=Os03t0147400-02
Chr03	irgsp1_rep	CDS	2652784	2652973	.	-	0	Parent=Os03t0147400-02
Chr03	irgsp1_rep	CDS	2652405	2652673	.	-	2	Parent=Os03t0147400-02
Chr03	irgsp1_rep	three_prime_UTR	2652072	2652404	.	-	.	Parent=Os03t0147400-02
Chr03	irgsp1_rep	mRNA	2652066	2654298	.	+	.	ID=Os03t0147550-00;Name=Os03t0147550-00;Locus_id=Os03g0147550;Note=Hypothetical protein.;Transcript_evidence=tplb0042g05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0147550-00
Chr03	irgsp1_rep	five_prime_UTR	2652066	2652667	.	+	.	Parent=Os03t0147550-00
Chr03	irgsp1_rep	five_prime_UTR	2652778	2652964	.	+	.	Parent=Os03t0147550-00
Chr03	irgsp1_rep	five_prime_UTR	2653059	2653691	.	+	.	Parent=Os03t0147550-00
Chr03	irgsp1_rep	CDS	2653692	2654114	.	+	0	Parent=Os03t0147550-00
Chr03	irgsp1_rep	three_prime_UTR	2654115	2654298	.	+	.	Parent=Os03t0147550-00
Chr03	irgsp1_rep	mRNA	2678302	2682146	.	-	.	ID=Os03t0147700-01;Name=Os03t0147700-01;Locus_id=Os03g0147700;CGSNL Gene Symbol=MTA3;CGSNL Gene Name=MRNA ADENOSINE METHYLASE 3;Oryzabase Gene Symbol Synonym(s)=OsMTA3;Oryzabase Gene Name Synonym(s)=mRNA adenosine methylase 3;Note=Similar to EMB1691 (EMBRYO DEFECTIVE 1691)%3B S-adenosylmethionine-dependent methyltransferase/ methyltransferase/ nucleic acid binding.;Transcript_evidence=AK070974 (DDBJ%2C Best hit);ORF_evidence=NP_001078365.1 (RefSeq);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Biological Process: methylation (GO:0032259),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: methyltransferase activity (GO:0008168);InterPro=DNA methylase%2C N-6 adenine-specific%2C conserved site (IPR002052),MT-A70 (IPR007757);NIAS_FLcDNA=J023070F02;Oryzabase=23094;TENOR=Os03t0147700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	2682005	2682146	.	-	.	Parent=Os03t0147700-01
Chr03	irgsp1_rep	five_prime_UTR	2680959	2681061	.	-	.	Parent=Os03t0147700-01
Chr03	irgsp1_rep	CDS	2679285	2680958	.	-	0	Parent=Os03t0147700-01
Chr03	irgsp1_rep	CDS	2679087	2679170	.	-	0	Parent=Os03t0147700-01
Chr03	irgsp1_rep	CDS	2678672	2678776	.	-	0	Parent=Os03t0147700-01
Chr03	irgsp1_rep	CDS	2678408	2678578	.	-	0	Parent=Os03t0147700-01
Chr03	irgsp1_rep	three_prime_UTR	2678302	2678407	.	-	.	Parent=Os03t0147700-01
Chr03	irgsp1_rep	mRNA	2677259	2680659	.	-	.	ID=Os03t0147700-02;Name=Os03t0147700-02;Locus_id=Os03g0147700;CGSNL Gene Symbol=MTA3;CGSNL Gene Name=MRNA ADENOSINE METHYLASE 3;Oryzabase Gene Symbol Synonym(s)=OsMTA3;Oryzabase Gene Name Synonym(s)=mRNA adenosine methylase 3;Note=Similar to MT-A70 family protein%2C expressed.;Transcript_evidence=AK063281 (DDBJ%2C Best hit);ORF_evidence=Q10RS1 (UniProt);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Biological Process: methylation (GO:0032259),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: methyltransferase activity (GO:0008168);InterPro=DNA methylase%2C N-6 adenine-specific%2C conserved site (IPR002052),MT-A70 (IPR007757);NIAS_FLcDNA=001-113-C12;Oryzabase=23094;TENOR=Os03t0147700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	2680659	2680659	.	-	.	Parent=Os03t0147700-02
Chr03	irgsp1_rep	CDS	2679285	2680658	.	-	0	Parent=Os03t0147700-02
Chr03	irgsp1_rep	CDS	2679087	2679170	.	-	0	Parent=Os03t0147700-02
Chr03	irgsp1_rep	CDS	2678672	2678776	.	-	0	Parent=Os03t0147700-02
Chr03	irgsp1_rep	CDS	2678470	2678578	.	-	0	Parent=Os03t0147700-02
Chr03	irgsp1_rep	CDS	2677820	2677971	.	-	2	Parent=Os03t0147700-02
Chr03	irgsp1_rep	CDS	2677562	2677699	.	-	0	Parent=Os03t0147700-02
Chr03	irgsp1_rep	three_prime_UTR	2677259	2677561	.	-	.	Parent=Os03t0147700-02
Chr03	irgsp1_rep	mRNA	2682324	2685442	.	+	.	ID=Os03t0147900-01;Name=Os03t0147900-01;Locus_id=Os03g0147900;Note=Peptidase S26A%2C signal peptidase I domain containing protein.;Transcript_evidence=AK241242 (DDBJ%2C Best hit);ORF_evidence=NP_001173267.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: serine-type peptidase activity (GO:0008236);InterPro=Peptidase S26A%2C signal peptidase I (IPR000223),Peptidase S24/S26A/S26B/S26C%2C beta-ribbon domain (IPR011056),Peptidase S24/S26A/S26B/S26C (IPR015927),Peptidase S26A%2C signal peptidase I%2C lysine active site (IPR019757),Peptidase S24/S26A/S26B (IPR019759);NIAS_FLcDNA=J065128L13;TENOR=Os03t0147900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	2682324	2682516	.	+	.	Parent=Os03t0147900-01
Chr03	irgsp1_rep	five_prime_UTR	2682632	2682847	.	+	.	Parent=Os03t0147900-01
Chr03	irgsp1_rep	CDS	2682848	2682858	.	+	0	Parent=Os03t0147900-01
Chr03	irgsp1_rep	CDS	2682965	2683051	.	+	1	Parent=Os03t0147900-01
Chr03	irgsp1_rep	CDS	2683143	2683308	.	+	1	Parent=Os03t0147900-01
Chr03	irgsp1_rep	CDS	2685144	2685251	.	+	0	Parent=Os03t0147900-01
Chr03	irgsp1_rep	three_prime_UTR	2685252	2685442	.	+	.	Parent=Os03t0147900-01
Chr03	irgsp1_rep	mRNA	2685582	2688291	.	-	.	ID=Os03t0148000-01;Name=Os03t0148000-01;Locus_id=Os03g0148000;Note=Protein of unknown function DUF677 family protein.;Transcript_evidence=AK110468 (DDBJ%2C Best hit);ORF_evidence=A2XCJ1 (UniProt);InterPro=Protein of unknown function DUF677 (IPR007749);NIAS_FLcDNA=002-166-G10;Expression=AK110468;TENOR=Os03t0148000-01;KEGG=Os03t0148000-01
Chr03	irgsp1_rep	five_prime_UTR	2688072	2688291	.	-	.	Parent=Os03t0148000-01
Chr03	irgsp1_rep	CDS	2688017	2688071	.	-	0	Parent=Os03t0148000-01
Chr03	irgsp1_rep	CDS	2685791	2686872	.	-	2	Parent=Os03t0148000-01
Chr03	irgsp1_rep	three_prime_UTR	2685582	2685790	.	-	.	Parent=Os03t0148000-01
Chr03	irgsp1_rep	mRNA	2695582	2696627	.	-	.	ID=Os03t0148300-00;Name=Os03t0148300-00;Locus_id=Os03g0148300;Note=Hypothetical conserved gene.;Transcript_evidence=EU952468 (DDBJ);ORF_evidence=Q8H087 (UniProt);TENOR=Os03t0148300-00;KEGG=Os03t0148300-00
Chr03	irgsp1_rep	CDS	2696199	2696627	.	-	0	Parent=Os03t0148300-00
Chr03	irgsp1_rep	CDS	2695979	2696107	.	-	0	Parent=Os03t0148300-00
Chr03	irgsp1_rep	CDS	2695582	2695761	.	-	0	Parent=Os03t0148300-00
Chr03	irgsp1_rep	mRNA	2698774	2700402	.	-	.	ID=Os03t0148400-01;Name=Os03t0148400-01;Locus_id=Os03g0148400;Note=Protein of unknown function DUF740 family protein.;Transcript_evidence=AK072852 (DDBJ%2C Best hit);ORF_evidence=Q8H086 (UniProt);InterPro=Uncharacterised protein family UPF0503 (IPR008004);NIAS_FLcDNA=J023138H13;Expression=AK072852;TENOR=Os03t0148400-01;KEGG=Os03t0148400-01
Chr03	irgsp1_rep	five_prime_UTR	2700402	2700402	.	-	.	Parent=Os03t0148400-01
Chr03	irgsp1_rep	CDS	2699073	2700401	.	-	0	Parent=Os03t0148400-01
Chr03	irgsp1_rep	three_prime_UTR	2698774	2699072	.	-	.	Parent=Os03t0148400-01
Chr03	irgsp1_rep	mRNA	2707497	2710821	.	+	.	ID=Os03t0148700-01;Name=Os03t0148700-01;Locus_id=Os03g0148700;CGSNL Gene Symbol=RLCK100;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 100;Oryzabase Gene Symbol Synonym(s)=OsRLCK100;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 100;Note=Similar to Calcium/calmodulin-regulated receptor-like kinase.;Transcript_evidence=AK065978 (DDBJ%2C Best hit);ORF_evidence=NP_001151810.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013049K21;Oryzabase=18809;Expression=AK065978;TENOR=Os03t0148700-01;KEGG=Os03t0148700-01
Chr03	irgsp1_rep	five_prime_UTR	2707497	2707579	.	+	.	Parent=Os03t0148700-01
Chr03	irgsp1_rep	CDS	2707580	2707832	.	+	0	Parent=Os03t0148700-01
Chr03	irgsp1_rep	CDS	2708733	2708995	.	+	2	Parent=Os03t0148700-01
Chr03	irgsp1_rep	CDS	2709078	2709246	.	+	0	Parent=Os03t0148700-01
Chr03	irgsp1_rep	CDS	2709342	2709431	.	+	2	Parent=Os03t0148700-01
Chr03	irgsp1_rep	CDS	2709871	2710163	.	+	2	Parent=Os03t0148700-01
Chr03	irgsp1_rep	CDS	2710250	2710474	.	+	0	Parent=Os03t0148700-01
Chr03	irgsp1_rep	three_prime_UTR	2710475	2710821	.	+	.	Parent=Os03t0148700-01
Chr03	irgsp1_rep	mRNA	2709920	2710758	.	+	.	ID=Os03t0148700-02;Name=Os03t0148700-02;Locus_id=Os03g0148700;CGSNL Gene Symbol=RLCK100;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 100;Oryzabase Gene Symbol Synonym(s)=OsRLCK100;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 100;Note=Similar to nodulation receptor kinase.;Transcript_evidence=AK105035 (DDBJ%2C Best hit);ORF_evidence=NP_001151810.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-032-B04;Oryzabase=18809;Expression=AK105035;TENOR=Os03t0148700-02;KEGG=Os03t0148700-02 (EC:2.7.11.1)
Chr03	irgsp1_rep	five_prime_UTR	2709920	2709920	.	+	.	Parent=Os03t0148700-02
Chr03	irgsp1_rep	CDS	2709921	2710163	.	+	0	Parent=Os03t0148700-02
Chr03	irgsp1_rep	CDS	2710250	2710474	.	+	0	Parent=Os03t0148700-02
Chr03	irgsp1_rep	three_prime_UTR	2710475	2710758	.	+	.	Parent=Os03t0148700-02
Chr03	irgsp1_rep	mRNA	2713317	2715918	.	-	.	ID=Os03t0148800-01;Name=Os03t0148800-01;Locus_id=Os03g0148800;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK068803 (DDBJ%2C Best hit);ORF_evidence=A2XCJ6 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J013161F12;Expression=AK068803;TENOR=Os03t0148800-01;KEGG=Os03t0148800-01
Chr03	irgsp1_rep	five_prime_UTR	2715738	2715918	.	-	.	Parent=Os03t0148800-01
Chr03	irgsp1_rep	CDS	2715582	2715737	.	-	0	Parent=Os03t0148800-01
Chr03	irgsp1_rep	CDS	2715347	2715461	.	-	0	Parent=Os03t0148800-01
Chr03	irgsp1_rep	CDS	2713536	2715220	.	-	2	Parent=Os03t0148800-01
Chr03	irgsp1_rep	three_prime_UTR	2713317	2713535	.	-	.	Parent=Os03t0148800-01
Chr03	irgsp1_rep	mRNA	2718103	2718273	.	+	.	ID=Os03t0148950-00;Name=Os03t0148950-00;Locus_id=Os03g0148950;Note=Non-protein coding transcript.;Transcript_evidence=EU947976 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0148950-00
Chr03	irgsp1_rep	exon	2718103	2718273	.	+	.	Parent=Os03t0148950-00
Chr03	irgsp1_rep	mRNA	2723037	2723835	.	+	.	ID=Os03t0149000-01;Name=Os03t0149000-01;Locus_id=Os03g0149000;CGSNL Gene Symbol=CRL1L1;Oryzabase Gene Symbol Synonym(s)=OsCrll1%2C OsLBD3-1%2C LBD3-1;Oryzabase Gene Name Synonym(s)=Crl1-like 1%2C lateral organ boundaries domain 3-1;Note=Similar to LOB domain protein 31.;Transcript_evidence=AK107949 (DDBJ%2C Best hit);ORF_evidence=A5H450 (UniProt);InterPro=Lateral organ boundaries%2C LOB (IPR004883);NIAS_FLcDNA=002-135-B09;Oryzabase=10454;Expression=AK107949;TENOR=Os03t0149000-01;KEGG=Os03t0149000-01
Chr03	irgsp1_rep	five_prime_UTR	2723037	2723072	.	+	.	Parent=Os03t0149000-01
Chr03	irgsp1_rep	CDS	2723073	2723369	.	+	0	Parent=Os03t0149000-01
Chr03	irgsp1_rep	CDS	2723447	2723707	.	+	0	Parent=Os03t0149000-01
Chr03	irgsp1_rep	three_prime_UTR	2723708	2723835	.	+	.	Parent=Os03t0149000-01
Chr03	irgsp1_rep	mRNA	2723080	2723585	.	-	.	ID=Os03t0149050-00;Name=Os03t0149050-00;Locus_id=Os03g0149050;Note=Non-protein coding transcript.;Transcript_evidence=BT037311 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0149050-00
Chr03	irgsp1_rep	exon	2723080	2723585	.	-	.	Parent=Os03t0149050-00
Chr03	irgsp1_rep	mRNA	2726696	2727559	.	-	.	ID=Os03t0149100-01;Name=Os03t0149100-01;Locus_id=Os03g0149100;RAP-DB Gene Symbol Synonym(s)=CRL1%2C crl1%2C crl1*%2C ARL1%2C ARL1/CRL1;RAP-DB Gene Name Synonym(s)=CROWN ROOTLESS 1%2C crown rootless-1%2C CROWN ROOTLESS1%2C Crown rootless1%2C ADVENTITIOUS ROOTLESS1%2C ADVENTITIOUS ROOTLESS 1;CGSNL Gene Symbol=CRL1;CGSNL Gene Name=CROWN ROOTLESS 1;Oryzabase Gene Symbol Synonym(s)=crl1%2C crl1*%2C ARL1%2C ARL1/CRL1%2C OsLBD3-2%2C LBD3-2%2C OsCRL1;Oryzabase Gene Name Synonym(s)=crown rootless-1%2C CROWN ROOTLESS1%2C Crown rootless1%2C ADVENTITIOUS ROOTLESS1%2C ADVENTITIOUS ROOTLESS 1%2C lateral organ boundaries domain 3-2;Note=ASYMMETRIC LEAVES2 (AS2)/LATERAL ORGAN BOUNDARIES (LOB) domain transcription factor%2C Crown root formation;Transcript_evidence=AB200234,AY736375;ORF_evidence=Q5UG13;InterPro=Lateral organ boundaries%2C LOB (IPR004883);Manual Curation=January 15%2C 2015;Literature_PMID=15829602,15960615;Oryzabase=2016;TENOR=Os03t0149100-00
Chr03	irgsp1_rep	CDS	2727281	2727559	.	-	0	Parent=Os03t0149100-01
Chr03	irgsp1_rep	CDS	2726696	2727196	.	-	0	Parent=Os03t0149100-01
Chr03	irgsp1_rep	mRNA	2739653	2743118	.	-	.	ID=Os03t0149200-01;Name=Os03t0149200-01;Locus_id=Os03g0149200;Note=HR-like lesion-inducer family protein.;Transcript_evidence=AK243567 (DDBJ%2C Best hit);ORF_evidence=E6Y8C3 (UniProt);InterPro=HR-like lesion-inducer (IPR008637);NIAS_FLcDNA=J100081K13;TENOR=Os03t0149200-01;KEGG=Os03t0149200-01
Chr03	irgsp1_rep	five_prime_UTR	2743001	2743118	.	-	.	Parent=Os03t0149200-01
Chr03	irgsp1_rep	CDS	2742933	2743000	.	-	0	Parent=Os03t0149200-01
Chr03	irgsp1_rep	CDS	2741250	2741364	.	-	1	Parent=Os03t0149200-01
Chr03	irgsp1_rep	CDS	2741081	2741170	.	-	0	Parent=Os03t0149200-01
Chr03	irgsp1_rep	CDS	2740066	2740164	.	-	0	Parent=Os03t0149200-01
Chr03	irgsp1_rep	CDS	2739880	2739981	.	-	0	Parent=Os03t0149200-01
Chr03	irgsp1_rep	three_prime_UTR	2739653	2739879	.	-	.	Parent=Os03t0149200-01
Chr03	irgsp1_rep	mRNA	2748162	2753327	.	-	.	ID=Os03t0149300-01;Name=Os03t0149300-01;Locus_id=Os03g0149300;Note=Protein of unknown function DUF6%2C transmembrane domain containing protein.;Transcript_evidence=AK242783 (DDBJ%2C Best hit);ORF_evidence=B8ANC3 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=J090056E21;TENOR=Os03t0149300-01;KEGG=Os03t0149300-01
Chr03	irgsp1_rep	five_prime_UTR	2753292	2753327	.	-	.	Parent=Os03t0149300-01
Chr03	irgsp1_rep	CDS	2753083	2753291	.	-	0	Parent=Os03t0149300-01
Chr03	irgsp1_rep	CDS	2752926	2752988	.	-	1	Parent=Os03t0149300-01
Chr03	irgsp1_rep	CDS	2752715	2752831	.	-	1	Parent=Os03t0149300-01
Chr03	irgsp1_rep	CDS	2752357	2752597	.	-	1	Parent=Os03t0149300-01
Chr03	irgsp1_rep	CDS	2748995	2749153	.	-	0	Parent=Os03t0149300-01
Chr03	irgsp1_rep	CDS	2748754	2748905	.	-	0	Parent=Os03t0149300-01
Chr03	irgsp1_rep	CDS	2748455	2748638	.	-	1	Parent=Os03t0149300-01
Chr03	irgsp1_rep	three_prime_UTR	2748162	2748454	.	-	.	Parent=Os03t0149300-01
Chr03	irgsp1_rep	mRNA	2757617	2760567	.	+	.	ID=Os03t0149400-01;Name=Os03t0149400-01;Locus_id=Os03g0149400;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK111396 (DDBJ%2C Best hit);ORF_evidence=Q8H078 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=002-182-D06;Expression=AK111396;TENOR=Os03t0149400-01;KEGG=Os03t0149400-01
Chr03	irgsp1_rep	five_prime_UTR	2757617	2757735	.	+	.	Parent=Os03t0149400-01
Chr03	irgsp1_rep	CDS	2757736	2758067	.	+	0	Parent=Os03t0149400-01
Chr03	irgsp1_rep	CDS	2758242	2759219	.	+	1	Parent=Os03t0149400-01
Chr03	irgsp1_rep	CDS	2760259	2760445	.	+	1	Parent=Os03t0149400-01
Chr03	irgsp1_rep	three_prime_UTR	2760446	2760567	.	+	.	Parent=Os03t0149400-01
Chr03	irgsp1_rep	mRNA	2771187	2772433	.	-	.	ID=Os03t0149700-00;Name=Os03t0149700-00;Locus_id=Os03g0149700;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=CT835217 (DDBJ%2C Best hit);ORF_evidence=NP_001173269.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os03t0149700-00;KEGG=Os03t0149700-00
Chr03	irgsp1_rep	five_prime_UTR	2772366	2772433	.	-	.	Parent=Os03t0149700-00
Chr03	irgsp1_rep	CDS	2771430	2772365	.	-	0	Parent=Os03t0149700-00
Chr03	irgsp1_rep	three_prime_UTR	2771402	2771429	.	-	.	Parent=Os03t0149700-00
Chr03	irgsp1_rep	three_prime_UTR	2771187	2771395	.	-	.	Parent=Os03t0149700-00
Chr03	irgsp1_rep	mRNA	2776626	2777769	.	-	.	ID=Os03t0149800-01;Name=Os03t0149800-01;Locus_id=Os03g0149800;Note=Similar to RING-H2 finger protein ATL1D.;Transcript_evidence=AK109394 (DDBJ%2C Best hit);ORF_evidence=Q8H076 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=006-212-E06;Expression=AK109394;TENOR=Os03t0149800-01;KEGG=Os03t0149800-01
Chr03	irgsp1_rep	five_prime_UTR	2777762	2777769	.	-	.	Parent=Os03t0149800-01
Chr03	irgsp1_rep	CDS	2776859	2777761	.	-	0	Parent=Os03t0149800-01
Chr03	irgsp1_rep	three_prime_UTR	2776626	2776858	.	-	.	Parent=Os03t0149800-01
Chr03	irgsp1_rep	mRNA	2800290	2800922	.	+	.	ID=Os03t0150200-00;Name=Os03t0150200-00;Locus_id=Os03g0150200;CGSNL Gene Symbol=ERF88;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 88;Oryzabase Gene Symbol Synonym(s)=OsERF#088%2C OsERF088%2C OsERF88%2C AP2/EREBP#024%2C AP2/EREBP24%2C OsAP23;Oryzabase Gene Name Synonym(s)=ethylene response factor 88%2C APETALA2/ethylene-responsive element binding protein 24%2C AP2/ERF Transcription Factor 23;Note=Similar to Ethylene-responsive transcription factor 5 (Ethylene-responsive element binding factor 5 homolog) (EREBP-4) (NtERF4).;Transcript_evidence=AY339376 (DDBJ%2C Best hit);ORF_evidence=A3AE61 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);Oryzabase=10593;Expression=AY339376;TENOR=Os03t0150200-00;KEGG=Os03t0150200-00
Chr03	irgsp1_rep	five_prime_UTR	2800290	2800337	.	+	.	Parent=Os03t0150200-00
Chr03	irgsp1_rep	CDS	2800338	2800763	.	+	0	Parent=Os03t0150200-00
Chr03	irgsp1_rep	three_prime_UTR	2800764	2800922	.	+	.	Parent=Os03t0150200-00
Chr03	irgsp1_rep	mRNA	2804141	2805941	.	+	.	ID=Os03t0150500-01;Name=Os03t0150500-01;Locus_id=Os03g0150500;CGSNL Gene Symbol=PT12;CGSNL Gene Name=PHOSPHATE TRANSPORTER 12;Oryzabase Gene Symbol Synonym(s)=OsPT12%2C PHT1-12%2C OsPht1%3B12;Oryzabase Gene Name Synonym(s)=Probable inorganic phosphate transporter 1-12;Note=Similar to Phosphate transporter 6.;Transcript_evidence=AK106694 (DDBJ%2C Best hit);ORF_evidence=Q84VI7 (UniProt);GO=Biological Process: phosphate ion transport (GO:0006817),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: inorganic phosphate transmembrane transporter activity (GO:0005315),Molecular Function: transmembrane transporter activity (GO:0022857);InterPro=Phosphate permease (IPR004738),General substrate transporter (IPR005828),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=002-114-C12;Oryzabase=8227;Expression=AK106694;TENOR=Os03t0150500-01;KEGG=Os03t0150500-01
Chr03	irgsp1_rep	five_prime_UTR	2804141	2804210	.	+	.	Parent=Os03t0150500-01
Chr03	irgsp1_rep	CDS	2804211	2805836	.	+	0	Parent=Os03t0150500-01
Chr03	irgsp1_rep	three_prime_UTR	2805837	2805941	.	+	.	Parent=Os03t0150500-01
Chr03	irgsp1_rep	mRNA	2804202	2805769	.	-	.	ID=Os03t0150550-00;Name=Os03t0150550-00;Locus_id=Os03g0150550;Note=Hypothetical gene.;Transcript_evidence=BT086156 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0150550-00;KEGG=Os03t0150550-00
Chr03	irgsp1_rep	five_prime_UTR	2805393	2805769	.	-	.	Parent=Os03t0150550-00
Chr03	irgsp1_rep	five_prime_UTR	2805093	2805158	.	-	.	Parent=Os03t0150550-00
Chr03	irgsp1_rep	CDS	2804559	2805092	.	-	0	Parent=Os03t0150550-00
Chr03	irgsp1_rep	three_prime_UTR	2804202	2804558	.	-	.	Parent=Os03t0150550-00
Chr03	irgsp1_rep	mRNA	2807709	2809539	.	-	.	ID=Os03t0150600-01;Name=Os03t0150600-01;Locus_id=Os03g0150600;RAP-DB Gene Symbol Synonym(s)=PT1%2C OsPT1%2C PHT1-1%2C OsPht1%3B1%2C Pht1%3B1;RAP-DB Gene Name Synonym(s)=PHOSPHATE TRANSPORTER 1%2C Inorganic phosphate transporter 1-1;CGSNL Gene Symbol=PT1;CGSNL Gene Name=PHOSPHATE TRANSPORTER 1;Oryzabase Gene Symbol Synonym(s)=OsPT1%2C PHT1-1%2C OsPht1%3B1%2C Pht1%3B1;Oryzabase Gene Name Synonym(s)=Inorganic phosphate transporter 1-1%2C phosphate transporter 1;Note=Pi transporter%2C Pi homeostasis;Transcript_evidence=AF536961 (Genbank),AK066911 (Genbank),AK071903 (Genbank);ORF_evidence=Q8H6H4 (UniProt);GO=Biological Process: phosphate ion transport (GO:0006817),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: inorganic phosphate transmembrane transporter activity (GO:0005315),Molecular Function: transmembrane transporter activity (GO:0022857);InterPro=Phosphate permease (IPR004738),General substrate transporter (IPR005828),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J013066K08,J013091A14;Manual Curation=June 21%2C 2010;Literature_PMID=12271140,18563580;Oryzabase=8216;TENOR=Os03t0150600-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	2809477	2809539	.	-	.	Parent=Os03t0150600-01
Chr03	irgsp1_rep	CDS	2807893	2809476	.	-	0	Parent=Os03t0150600-01
Chr03	irgsp1_rep	three_prime_UTR	2807709	2807892	.	-	.	Parent=Os03t0150600-01
Chr03	irgsp1_rep	mRNA	2807616	2809540	.	-	.	ID=Os03t0150600-02;Name=Os03t0150600-02;Locus_id=Os03g0150600;CGSNL Gene Symbol=PT1;CGSNL Gene Name=PHOSPHATE TRANSPORTER 1;Oryzabase Gene Symbol Synonym(s)=OsPT1%2C PHT1-1%2C OsPht1%3B1%2C Pht1%3B1;Oryzabase Gene Name Synonym(s)=Inorganic phosphate transporter 1-1%2C phosphate transporter 1;Note=Similar to Isoform 2 of Inorganic phosphate transporter 1-1.;Transcript_evidence=AK065075 (DDBJ%2C Best hit);ORF_evidence=Q8H6H4-2 (UniProt);GO=Biological Process: phosphate ion transport (GO:0006817),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: inorganic phosphate transmembrane transporter activity (GO:0005315),Molecular Function: transmembrane transporter activity (GO:0022857);InterPro=Phosphate permease (IPR004738),General substrate transporter (IPR005828),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J013001K12;Oryzabase=8216;TENOR=Os03t0150600-02;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	2809477	2809540	.	-	.	Parent=Os03t0150600-02
Chr03	irgsp1_rep	CDS	2808148	2809476	.	-	0	Parent=Os03t0150600-02
Chr03	irgsp1_rep	CDS	2807893	2808039	.	-	0	Parent=Os03t0150600-02
Chr03	irgsp1_rep	three_prime_UTR	2807616	2807892	.	-	.	Parent=Os03t0150600-02
Chr03	irgsp1_rep	mRNA	2811754	2814873	.	+	.	ID=Os03t0150700-00;Name=Os03t0150700-00;Locus_id=Os03g0150700;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B8ANC4 (UniProt);TENOR=Os03t0150700-00;KEGG=Os03t0150700-00
Chr03	irgsp1_rep	CDS	2811754	2812024	.	+	0	Parent=Os03t0150700-00
Chr03	irgsp1_rep	CDS	2812600	2812821	.	+	2	Parent=Os03t0150700-00
Chr03	irgsp1_rep	CDS	2813448	2813510	.	+	2	Parent=Os03t0150700-00
Chr03	irgsp1_rep	CDS	2813657	2813984	.	+	2	Parent=Os03t0150700-00
Chr03	irgsp1_rep	CDS	2814552	2814873	.	+	1	Parent=Os03t0150700-00
Chr03	irgsp1_rep	mRNA	2815502	2817322	.	-	.	ID=Os03t0150800-01;Name=Os03t0150800-01;Locus_id=Os03g0150800;RAP-DB Gene Symbol Synonym(s)=PT2%2C OsPT2%2C PTH1-2%2C OsPht1%3B2;RAP-DB Gene Name Synonym(s)=PHOSPHATE TRANSPORTER 2%2C High affinity phosphate transporter 2%2C Inorganic phosphate transporter 1-2;CGSNL Gene Symbol=PT2;CGSNL Gene Name=PHOSPHATE TRANSPORTER 2;Oryzabase Gene Symbol Synonym(s)=OsPT2%2C PTH1-2%2C OsPht1%3B2%2C PHT1%3B2;Oryzabase Gene Name Synonym(s)=High affinity phosphate transporter 2%2C Inorganic phosphate transporter 1-2;Note=Pi transporter%2C Pi homeostasis%2C Selenite uptake;Transcript_evidence=AF536962,AF536959;ORF_evidence=Q8GSD9;GO=Biological Process: phosphate ion transport (GO:0006817),Biological Process: transmembrane transport (GO:0055085),Molecular Function: inorganic phosphate transmembrane transporter activity (GO:0005315),Molecular Function: transmembrane transporter activity (GO:0022857),Cellular Component: integral component of membrane (GO:0016021);InterPro=General substrate transporter (IPR005828),Phosphate permease (IPR004738),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);Manual Curation=February 6%2C 2014;Literature_PMID=12271140,18980647,20149131,24491113;Oryzabase=8217;TENOR=Os03t0150800-01
Chr03	irgsp1_rep	CDS	2815736	2817322	.	-	0	Parent=Os03t0150800-01
Chr03	irgsp1_rep	three_prime_UTR	2815502	2815735	.	-	.	Parent=Os03t0150800-01
Chr03	irgsp1_rep	mRNA	2815744	2817289	.	+	.	ID=Os03t0150901-00;Name=Os03t0150901-00;Locus_id=Os03g0150901;Note=Hypothetical gene.;Transcript_evidence=BT086132 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0150901-00;KEGG=Os03t0150901-00
Chr03	irgsp1_rep	five_prime_UTR	2815744	2815744	.	+	.	Parent=Os03t0150901-00
Chr03	irgsp1_rep	CDS	2815745	2816467	.	+	0	Parent=Os03t0150901-00
Chr03	irgsp1_rep	three_prime_UTR	2816468	2817289	.	+	.	Parent=Os03t0150901-00
Chr03	irgsp1_rep	mRNA	2819265	2820118	.	-	.	ID=Os03t0151000-00;Name=Os03t0151000-00;Locus_id=Os03g0151000;Note=Conserved hypothetical protein.;Transcript_evidence=AF216531 (DDBJ%2C Best hit);ORF_evidence=Q5NAS3 (UniProt);TENOR=Os03t0151000-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	2819860	2820118	.	-	.	Parent=Os03t0151000-00
Chr03	irgsp1_rep	CDS	2819265	2819859	.	-	0	Parent=Os03t0151000-00
Chr03	irgsp1_rep	mRNA	2823077	2828037	.	-	.	ID=Os03t0151100-01;Name=Os03t0151100-01;Locus_id=Os03g0151100;Note=Appr-1-p processing domain containing protein.;Transcript_evidence=AK099979 (DDBJ%2C Best hit);ORF_evidence=NP_001152046.1 (RefSeq);InterPro=Appr-1-p processing (IPR002589);NIAS_FLcDNA=J013129C24;Expression=AK099979;TENOR=Os03t0151100-01;KEGG=Os03t0151100-01
Chr03	irgsp1_rep	five_prime_UTR	2827947	2828037	.	-	.	Parent=Os03t0151100-01
Chr03	irgsp1_rep	CDS	2827587	2827946	.	-	0	Parent=Os03t0151100-01
Chr03	irgsp1_rep	CDS	2827423	2827500	.	-	0	Parent=Os03t0151100-01
Chr03	irgsp1_rep	CDS	2827273	2827328	.	-	0	Parent=Os03t0151100-01
Chr03	irgsp1_rep	CDS	2826383	2826502	.	-	1	Parent=Os03t0151100-01
Chr03	irgsp1_rep	CDS	2826180	2826250	.	-	1	Parent=Os03t0151100-01
Chr03	irgsp1_rep	CDS	2825901	2825994	.	-	2	Parent=Os03t0151100-01
Chr03	irgsp1_rep	CDS	2825610	2825822	.	-	1	Parent=Os03t0151100-01
Chr03	irgsp1_rep	CDS	2825270	2825465	.	-	1	Parent=Os03t0151100-01
Chr03	irgsp1_rep	three_prime_UTR	2825214	2825269	.	-	.	Parent=Os03t0151100-01
Chr03	irgsp1_rep	three_prime_UTR	2824990	2825098	.	-	.	Parent=Os03t0151100-01
Chr03	irgsp1_rep	three_prime_UTR	2823982	2824049	.	-	.	Parent=Os03t0151100-01
Chr03	irgsp1_rep	three_prime_UTR	2823819	2823888	.	-	.	Parent=Os03t0151100-01
Chr03	irgsp1_rep	three_prime_UTR	2823656	2823730	.	-	.	Parent=Os03t0151100-01
Chr03	irgsp1_rep	three_prime_UTR	2823469	2823560	.	-	.	Parent=Os03t0151100-01
Chr03	irgsp1_rep	three_prime_UTR	2823077	2823388	.	-	.	Parent=Os03t0151100-01
Chr03	irgsp1_rep	mRNA	2823275	2825432	.	+	.	ID=Os03t0151201-01;Name=Os03t0151201-01;Locus_id=Os03g0151201;Note=Non-protein coding transcript.;Transcript_evidence=AK288979 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090085M18;TENOR=Os03t0151201-01
Chr03	irgsp1_rep	exon	2823275	2825432	.	+	.	Parent=Os03t0151201-01
Chr03	irgsp1_rep	mRNA	2833133	2837268	.	+	.	ID=Os03t0151300-01;Name=Os03t0151300-01;Locus_id=Os03g0151300;CGSNL Gene Symbol=SE14;CGSNL Gene Name=PHOTOSENSITIVITY 14;Oryzabase Gene Symbol Synonym(s)=JMJ701%2C Os JMJ701%2C Se14;Oryzabase Gene Name Synonym(s)=Jumonji 701%2C Photoperiod-sensitivity-14;Note=Similar to JmjC domain containing protein%2C expressed.;Transcript_evidence=AK110927 (DDBJ%2C Best hit);ORF_evidence=Q10RP5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Transcription factor jumonji/aspartyl beta-hydroxylase (IPR003347),Transcription factor jumonji%2C JmjN (IPR003349),Transcription factor jumonji (IPR013129);NIAS_FLcDNA=002-173-D09;Oryzabase=23311;TENOR=Os03t0151300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	2833133	2833279	.	+	.	Parent=Os03t0151300-01
Chr03	irgsp1_rep	CDS	2833280	2834246	.	+	0	Parent=Os03t0151300-01
Chr03	irgsp1_rep	CDS	2834333	2834395	.	+	2	Parent=Os03t0151300-01
Chr03	irgsp1_rep	CDS	2834488	2834519	.	+	2	Parent=Os03t0151300-01
Chr03	irgsp1_rep	three_prime_UTR	2834520	2834555	.	+	.	Parent=Os03t0151300-01
Chr03	irgsp1_rep	three_prime_UTR	2835270	2835420	.	+	.	Parent=Os03t0151300-01
Chr03	irgsp1_rep	three_prime_UTR	2837131	2837268	.	+	.	Parent=Os03t0151300-01
Chr03	irgsp1_rep	mRNA	2833113	2841685	.	+	.	ID=Os03t0151300-02;Name=Os03t0151300-02;Locus_id=Os03g0151300;RAP-DB Gene Symbol Synonym(s)=Se14;RAP-DB Gene Name Synonym(s)=photoperiod sensitivity-14;CGSNL Gene Symbol=SE14;CGSNL Gene Name=PHOTOSENSITIVITY 14;Oryzabase Gene Symbol Synonym(s)=JMJ701%2C Os JMJ701%2C Se14;Oryzabase Gene Name Synonym(s)=Jumonji 701%2C Photoperiod-sensitivity-14;Note=JmjC domain-containing protein with a zinc-finger (ZnF) domain%2C Demethylase of H3K4 methylation%2C Suppression of flowering time under long day conditions;Transcript_evidence=XM_015774994,AK110807 (truncated);ORF_evidence=Q10RP4;GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Zinc finger C2H2 superfamily (IPR036236),JmjN domain (IPR003349),JmjC domain (IPR003347),Zinc finger C2H2-type (IPR013087);NIAS_FLcDNA=002-171-F01 (truncated);Manual Curation=February 13%2C 2020;Literature_PMID=24759811;Oryzabase=23311
Chr03	irgsp1_rep	five_prime_UTR	2833113	2833279	.	+	.	Parent=Os03t0151300-02
Chr03	irgsp1_rep	CDS	2833280	2834246	.	+	0	Parent=Os03t0151300-02
Chr03	irgsp1_rep	CDS	2834333	2834411	.	+	2	Parent=Os03t0151300-02
Chr03	irgsp1_rep	CDS	2834488	2834555	.	+	1	Parent=Os03t0151300-02
Chr03	irgsp1_rep	CDS	2835270	2835420	.	+	2	Parent=Os03t0151300-02
Chr03	irgsp1_rep	CDS	2837131	2837738	.	+	1	Parent=Os03t0151300-02
Chr03	irgsp1_rep	CDS	2838402	2838821	.	+	2	Parent=Os03t0151300-02
Chr03	irgsp1_rep	CDS	2839126	2841296	.	+	2	Parent=Os03t0151300-02
Chr03	irgsp1_rep	three_prime_UTR	2841297	2841685	.	+	.	Parent=Os03t0151300-02
Chr03	irgsp1_rep	mRNA	2841790	2842391	.	-	.	ID=Os03t0151500-01;Name=Os03t0151500-01;Locus_id=Os03g0151500;Note=Conserved hypothetical protein.;Transcript_evidence=AK109181 (DDBJ%2C Best hit);ORF_evidence=A3AE69 (UniProt);NIAS_FLcDNA=002-156-A04;Expression=AK109181;TENOR=Os03t0151500-01;KEGG=Os03t0151500-01
Chr03	irgsp1_rep	five_prime_UTR	2842312	2842391	.	-	.	Parent=Os03t0151500-01
Chr03	irgsp1_rep	CDS	2842003	2842311	.	-	0	Parent=Os03t0151500-01
Chr03	irgsp1_rep	three_prime_UTR	2841790	2842002	.	-	.	Parent=Os03t0151500-01
Chr03	irgsp1_rep	mRNA	2843857	2844839	.	-	.	ID=Os03t0151600-01;Name=Os03t0151600-01;Locus_id=Os03g0151600;Note=Acyl-CoA N-acyltransferase domain containing protein.;Transcript_evidence=AK066845 (DDBJ%2C Best hit);ORF_evidence=B6T916 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: N-acetyltransferase activity (GO:0008080);InterPro=GCN5-related N-acetyltransferase (GNAT) domain (IPR000182),Acyl-CoA N-acyltransferase (IPR016181);NIAS_FLcDNA=J013082M03;Expression=AK066845;TENOR=Os03t0151600-01;KEGG=Os03t0151600-01
Chr03	irgsp1_rep	five_prime_UTR	2844777	2844839	.	-	.	Parent=Os03t0151600-01
Chr03	irgsp1_rep	CDS	2844681	2844776	.	-	0	Parent=Os03t0151600-01
Chr03	irgsp1_rep	CDS	2844093	2844494	.	-	0	Parent=Os03t0151600-01
Chr03	irgsp1_rep	three_prime_UTR	2843857	2844092	.	-	.	Parent=Os03t0151600-01
Chr03	irgsp1_rep	mRNA	2843857	2844826	.	-	.	ID=Os03t0151600-02;Name=Os03t0151600-02;Locus_id=Os03g0151600;Note=Similar to N-acetyltransferase.;Transcript_evidence=AK073240 (DDBJ%2C Best hit);ORF_evidence=B6T916 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: N-acetyltransferase activity (GO:0008080);InterPro=GCN5-related N-acetyltransferase (GNAT) domain (IPR000182),Acyl-CoA N-acyltransferase (IPR016181);NIAS_FLcDNA=J033012G12;Expression=AK073240;TENOR=Os03t0151600-02;KEGG=Os03t0151600-02 (EC:2.3.1.57)
Chr03	irgsp1_rep	five_prime_UTR	2844777	2844826	.	-	.	Parent=Os03t0151600-02
Chr03	irgsp1_rep	CDS	2844093	2844776	.	-	0	Parent=Os03t0151600-02
Chr03	irgsp1_rep	three_prime_UTR	2843857	2844092	.	-	.	Parent=Os03t0151600-02
Chr03	irgsp1_rep	mRNA	2845714	2851680	.	+	.	ID=Os03t0151700-01;Name=Os03t0151700-01;Locus_id=Os03g0151700;Oryzabase Gene Symbol Synonym(s)=OsWD40-63;Note=Similar to WD repeat protein (Fragment).;Transcript_evidence=AK101270 (DDBJ%2C Best hit);ORF_evidence=NP_188791.3 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),Small-subunit processome%2C Utp12 (IPR007148),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J033032N04;Oryzabase=10744;Expression=AK101270;TENOR=Os03t0151700-01;KEGG=Os03t0151700-01
Chr03	irgsp1_rep	five_prime_UTR	2845714	2845781	.	+	.	Parent=Os03t0151700-01
Chr03	irgsp1_rep	CDS	2845782	2846027	.	+	0	Parent=Os03t0151700-01
Chr03	irgsp1_rep	CDS	2846130	2846345	.	+	0	Parent=Os03t0151700-01
Chr03	irgsp1_rep	CDS	2846428	2847519	.	+	0	Parent=Os03t0151700-01
Chr03	irgsp1_rep	CDS	2847928	2848050	.	+	0	Parent=Os03t0151700-01
Chr03	irgsp1_rep	CDS	2848461	2848642	.	+	0	Parent=Os03t0151700-01
Chr03	irgsp1_rep	CDS	2848726	2848957	.	+	1	Parent=Os03t0151700-01
Chr03	irgsp1_rep	CDS	2849059	2849268	.	+	0	Parent=Os03t0151700-01
Chr03	irgsp1_rep	CDS	2849390	2849518	.	+	0	Parent=Os03t0151700-01
Chr03	irgsp1_rep	CDS	2850392	2850460	.	+	0	Parent=Os03t0151700-01
Chr03	irgsp1_rep	CDS	2850964	2851086	.	+	0	Parent=Os03t0151700-01
Chr03	irgsp1_rep	CDS	2851170	2851220	.	+	0	Parent=Os03t0151700-01
Chr03	irgsp1_rep	CDS	2851314	2851463	.	+	0	Parent=Os03t0151700-01
Chr03	irgsp1_rep	three_prime_UTR	2851464	2851680	.	+	.	Parent=Os03t0151700-01
Chr03	irgsp1_rep	mRNA	2848017	2851613	.	+	.	ID=Os03t0151700-02;Name=Os03t0151700-02;Locus_id=Os03g0151700;Oryzabase Gene Symbol Synonym(s)=OsWD40-63;Note=Hypothetical conserved gene.;Transcript_evidence=AK111951 (DDBJ%2C Best hit);ORF_evidence=B8ANC7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),Small-subunit processome%2C Utp12 (IPR007148),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=001-027-E04;Oryzabase=10744;Expression=AK111951;TENOR=Os03t0151700-02;KEGG=Os03t0151700-02
Chr03	irgsp1_rep	five_prime_UTR	2848017	2848017	.	+	.	Parent=Os03t0151700-02
Chr03	irgsp1_rep	CDS	2848018	2848050	.	+	0	Parent=Os03t0151700-02
Chr03	irgsp1_rep	CDS	2848461	2848642	.	+	0	Parent=Os03t0151700-02
Chr03	irgsp1_rep	CDS	2848726	2848957	.	+	1	Parent=Os03t0151700-02
Chr03	irgsp1_rep	CDS	2849059	2849268	.	+	0	Parent=Os03t0151700-02
Chr03	irgsp1_rep	CDS	2849390	2849518	.	+	0	Parent=Os03t0151700-02
Chr03	irgsp1_rep	CDS	2850392	2850460	.	+	0	Parent=Os03t0151700-02
Chr03	irgsp1_rep	CDS	2850964	2851086	.	+	0	Parent=Os03t0151700-02
Chr03	irgsp1_rep	CDS	2851170	2851220	.	+	0	Parent=Os03t0151700-02
Chr03	irgsp1_rep	CDS	2851314	2851463	.	+	0	Parent=Os03t0151700-02
Chr03	irgsp1_rep	three_prime_UTR	2851464	2851613	.	+	.	Parent=Os03t0151700-02
Chr03	irgsp1_rep	mRNA	2852295	2856681	.	-	.	ID=Os03t0151800-02;Name=Os03t0151800-02;Locus_id=Os03g0151800;RAP-DB Gene Symbol Synonym(s)=OsCDC48%2C PSD128;RAP-DB Gene Name Synonym(s)=cell division cycle 48%2C premature senescence and death 128;CGSNL Gene Symbol=PSD128;CGSNL Gene Name=PREMATURE SENESCENCE AND DEATH 128;Oryzabase Gene Symbol Synonym(s)=OsCDC48%2C CDC48%2C OsCDC48-1%2C CDC48-1;Oryzabase Gene Name Synonym(s)=cell division cycle 48%2C premature senescence and death 128;Note=AAA-type ATPase%2C Modulation of cellular processes%2C Control of plant survival;Transcript_evidence=AK121641,AK064955,AK098874,AK098980,AK099712,AK099889;ORF_evidence=Q10RP0;GO=Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity (GO:0016787);InterPro=Aspartate decarboxylase-like domain superfamily (IPR009010),CDC48 domain 2-like superfamily (IPR029067),P-loop containing nucleoside triphosphate hydrolase (IPR027417),AAA ATPase%2C CDC48 family (IPR005938),CDC48%2C N-terminal subdomain (IPR003338),CDC48%2C domain 2 (IPR004201),AAA+ ATPase domain (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);NIAS_FLcDNA=J033055F21,J013001A05,J013001D04,J013093N05,J013082G14,J013112O07;Manual Curation=April 5%2C 2019;Literature_PMID=30937701,26040493;Oryzabase=19832;Expression=AK121641;TENOR=Os03t0151800-02;KEGG=Os03t0151800-02;Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737)
Chr03	irgsp1_rep	five_prime_UTR	2856564	2856681	.	-	.	Parent=Os03t0151800-02
Chr03	irgsp1_rep	CDS	2856526	2856563	.	-	0	Parent=Os03t0151800-02
Chr03	irgsp1_rep	CDS	2856240	2856402	.	-	1	Parent=Os03t0151800-02
Chr03	irgsp1_rep	CDS	2855419	2855647	.	-	0	Parent=Os03t0151800-02
Chr03	irgsp1_rep	CDS	2854318	2855084	.	-	2	Parent=Os03t0151800-02
Chr03	irgsp1_rep	CDS	2854011	2854232	.	-	0	Parent=Os03t0151800-02
Chr03	irgsp1_rep	CDS	2853847	2853918	.	-	0	Parent=Os03t0151800-02
Chr03	irgsp1_rep	CDS	2853494	2853775	.	-	0	Parent=Os03t0151800-02
Chr03	irgsp1_rep	CDS	2853051	2853410	.	-	0	Parent=Os03t0151800-02
Chr03	irgsp1_rep	CDS	2852659	2852955	.	-	0	Parent=Os03t0151800-02
Chr03	irgsp1_rep	three_prime_UTR	2852295	2852658	.	-	.	Parent=Os03t0151800-02
Chr03	irgsp1_rep	mRNA	2852528	2854100	.	-	.	ID=Os03t0151800-03;Name=Os03t0151800-03;Locus_id=Os03g0151800;CGSNL Gene Symbol=PSD128;CGSNL Gene Name=PREMATURE SENESCENCE AND DEATH 128;Oryzabase Gene Symbol Synonym(s)=OsCDC48%2C CDC48%2C OsCDC48-1%2C CDC48-1;Oryzabase Gene Name Synonym(s)=cell division cycle 48%2C premature senescence and death 128;Note=Hypothetical conserved gene.;Transcript_evidence=AK059991 (DDBJ%2C Best hit);ORF_evidence=XP_002465842.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960),ATPase%2C AAA-type%2C CDC48 (IPR005938);NIAS_FLcDNA=006-301-B06;Oryzabase=19832;Expression=AK059991;TENOR=Os03t0151800-03;KEGG=Os03t0151800-03
Chr03	irgsp1_rep	CDS	2854011	2854100	.	-	0	Parent=Os03t0151800-03
Chr03	irgsp1_rep	CDS	2853847	2853918	.	-	0	Parent=Os03t0151800-03
Chr03	irgsp1_rep	CDS	2853494	2853775	.	-	0	Parent=Os03t0151800-03
Chr03	irgsp1_rep	CDS	2853051	2853410	.	-	0	Parent=Os03t0151800-03
Chr03	irgsp1_rep	CDS	2852659	2852955	.	-	0	Parent=Os03t0151800-03
Chr03	irgsp1_rep	three_prime_UTR	2852528	2852658	.	-	.	Parent=Os03t0151800-03
Chr03	irgsp1_rep	mRNA	2853050	2856382	.	+	.	ID=Os03t0151850-00;Name=Os03t0151850-00;Locus_id=Os03g0151850;Note=Hypothetical gene.;Transcript_evidence=AK373447 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0151850-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	2853050	2853420	.	+	.	Parent=Os03t0151850-00
Chr03	irgsp1_rep	five_prime_UTR	2853502	2853773	.	+	.	Parent=Os03t0151850-00
Chr03	irgsp1_rep	five_prime_UTR	2853844	2853916	.	+	.	Parent=Os03t0151850-00
Chr03	irgsp1_rep	five_prime_UTR	2854009	2854217	.	+	.	Parent=Os03t0151850-00
Chr03	irgsp1_rep	five_prime_UTR	2854304	2854390	.	+	.	Parent=Os03t0151850-00
Chr03	irgsp1_rep	CDS	2854391	2854768	.	+	0	Parent=Os03t0151850-00
Chr03	irgsp1_rep	three_prime_UTR	2854769	2855091	.	+	.	Parent=Os03t0151850-00
Chr03	irgsp1_rep	three_prime_UTR	2855426	2855629	.	+	.	Parent=Os03t0151850-00
Chr03	irgsp1_rep	three_prime_UTR	2856224	2856382	.	+	.	Parent=Os03t0151850-00
Chr03	irgsp1_rep	mRNA	2857196	2860218	.	-	.	ID=Os03t0151900-01;Name=Os03t0151900-01;Locus_id=Os03g0151900;Oryzabase Gene Symbol Synonym(s)=OsRab5A1%2C OsRab5b%2C Rab5b;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab5A1;Note=Similar to Small GTP-binding protein.;Transcript_evidence=AK121527 (DDBJ%2C Best hit);ORF_evidence=Q9FPK1 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: intracellular protein transport (GO:0006886),Biological Process: nucleocytoplasmic transport (GO:0006913),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Cellular Component: membrane (GO:0016020),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Ran GTPase (IPR002041),Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C Ras type (IPR020849);NIAS_FLcDNA=J033030F24;Oryzabase=11078;Expression=AK121527;TENOR=Os03t0151900-01;KEGG=Os03t0151900-01
Chr03	irgsp1_rep	five_prime_UTR	2860041	2860218	.	-	.	Parent=Os03t0151900-01
Chr03	irgsp1_rep	CDS	2860016	2860040	.	-	0	Parent=Os03t0151900-01
Chr03	irgsp1_rep	CDS	2859483	2859556	.	-	2	Parent=Os03t0151900-01
Chr03	irgsp1_rep	CDS	2859303	2859386	.	-	0	Parent=Os03t0151900-01
Chr03	irgsp1_rep	CDS	2859090	2859184	.	-	0	Parent=Os03t0151900-01
Chr03	irgsp1_rep	CDS	2858788	2858893	.	-	1	Parent=Os03t0151900-01
Chr03	irgsp1_rep	CDS	2858330	2858419	.	-	0	Parent=Os03t0151900-01
Chr03	irgsp1_rep	CDS	2858159	2858245	.	-	0	Parent=Os03t0151900-01
Chr03	irgsp1_rep	CDS	2857426	2857464	.	-	0	Parent=Os03t0151900-01
Chr03	irgsp1_rep	three_prime_UTR	2857196	2857425	.	-	.	Parent=Os03t0151900-01
Chr03	irgsp1_rep	mRNA	2857179	2860184	.	-	.	ID=Os03t0151900-02;Name=Os03t0151900-02;Locus_id=Os03g0151900;Oryzabase Gene Symbol Synonym(s)=OsRab5A1%2C OsRab5b%2C Rab5b;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab5A1;Note=Similar to Small GTP-binding protein.;Transcript_evidence=AK105389 (DDBJ%2C Best hit);ORF_evidence=Q9FPK1 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: intracellular protein transport (GO:0006886),Biological Process: nucleocytoplasmic transport (GO:0006913),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Cellular Component: membrane (GO:0016020),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Ran GTPase (IPR002041),Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C Ras type (IPR020849);NIAS_FLcDNA=001-122-A01;Oryzabase=11078;TENOR=Os03t0151900-02
Chr03	irgsp1_rep	five_prime_UTR	2860041	2860184	.	-	.	Parent=Os03t0151900-02
Chr03	irgsp1_rep	CDS	2860016	2860040	.	-	0	Parent=Os03t0151900-02
Chr03	irgsp1_rep	CDS	2859483	2859556	.	-	2	Parent=Os03t0151900-02
Chr03	irgsp1_rep	CDS	2859303	2859386	.	-	0	Parent=Os03t0151900-02
Chr03	irgsp1_rep	CDS	2859090	2859184	.	-	0	Parent=Os03t0151900-02
Chr03	irgsp1_rep	CDS	2858788	2858893	.	-	1	Parent=Os03t0151900-02
Chr03	irgsp1_rep	CDS	2858330	2858419	.	-	0	Parent=Os03t0151900-02
Chr03	irgsp1_rep	CDS	2858159	2858245	.	-	0	Parent=Os03t0151900-02
Chr03	irgsp1_rep	CDS	2857426	2857464	.	-	0	Parent=Os03t0151900-02
Chr03	irgsp1_rep	three_prime_UTR	2857179	2857425	.	-	.	Parent=Os03t0151900-02
Chr03	irgsp1_rep	mRNA	2866379	2868145	.	-	.	ID=Os03t0152000-01;Name=Os03t0152000-01;Locus_id=Os03g0152000;CGSNL Gene Symbol=HMP18;CGSNL Gene Name=HEAVY METAL-ASSOCIATED PROTEIN 18;Oryzabase Gene Symbol Synonym(s)=OsHMP18;Oryzabase Gene Name Synonym(s)=Heavy metal-associated protein 18;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK102357 (DDBJ%2C Best hit);ORF_evidence=A2XCL8 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);NIAS_FLcDNA=J033091H19;Oryzabase=23540;Expression=AK102357;TENOR=Os03t0152000-01;KEGG=Os03t0152000-01
Chr03	irgsp1_rep	five_prime_UTR	2868076	2868145	.	-	.	Parent=Os03t0152000-01
Chr03	irgsp1_rep	CDS	2867955	2868075	.	-	0	Parent=Os03t0152000-01
Chr03	irgsp1_rep	CDS	2867559	2867821	.	-	2	Parent=Os03t0152000-01
Chr03	irgsp1_rep	CDS	2867368	2867446	.	-	0	Parent=Os03t0152000-01
Chr03	irgsp1_rep	CDS	2866662	2867245	.	-	2	Parent=Os03t0152000-01
Chr03	irgsp1_rep	three_prime_UTR	2866379	2866661	.	-	.	Parent=Os03t0152000-01
Chr03	irgsp1_rep	mRNA	2870376	2875830	.	+	.	ID=Os03t0152100-01;Name=Os03t0152100-01;Locus_id=Os03g0152100;Oryzabase Gene Symbol Synonym(s)=Orysa%3BDP3;Oryzabase Gene Name Synonym(s)=E2F dimerization factor;Note=Similar to E2F-DP transcription factor.;Transcript_evidence=AK242229 (DDBJ%2C Best hit);ORF_evidence=B4FHH8 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: transcription factor complex (GO:0005667),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Transcription factor E2F/dimerisation partner (TDP) (IPR003316),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Transcription factor DP (IPR015648);NIAS_FLcDNA=J075175O16;Oryzabase=13318;TENOR=Os03t0152100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	2870376	2870481	.	+	.	Parent=Os03t0152100-01
Chr03	irgsp1_rep	five_prime_UTR	2870623	2870703	.	+	.	Parent=Os03t0152100-01
Chr03	irgsp1_rep	CDS	2870704	2870816	.	+	0	Parent=Os03t0152100-01
Chr03	irgsp1_rep	CDS	2871415	2871491	.	+	1	Parent=Os03t0152100-01
Chr03	irgsp1_rep	CDS	2871601	2871644	.	+	2	Parent=Os03t0152100-01
Chr03	irgsp1_rep	CDS	2872356	2872445	.	+	0	Parent=Os03t0152100-01
Chr03	irgsp1_rep	three_prime_UTR	2872446	2872653	.	+	.	Parent=Os03t0152100-01
Chr03	irgsp1_rep	three_prime_UTR	2872741	2872809	.	+	.	Parent=Os03t0152100-01
Chr03	irgsp1_rep	three_prime_UTR	2872983	2873081	.	+	.	Parent=Os03t0152100-01
Chr03	irgsp1_rep	three_prime_UTR	2873180	2873250	.	+	.	Parent=Os03t0152100-01
Chr03	irgsp1_rep	three_prime_UTR	2874816	2874916	.	+	.	Parent=Os03t0152100-01
Chr03	irgsp1_rep	three_prime_UTR	2875490	2875830	.	+	.	Parent=Os03t0152100-01
Chr03	irgsp1_rep	mRNA	2872974	2875186	.	-	.	ID=Os03t0152200-00;Name=Os03t0152200-00;Locus_id=Os03g0152200;Note=Non-protein coding transcript.;Transcript_evidence=BT009415 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0152200-00
Chr03	irgsp1_rep	exon	2874811	2875186	.	-	.	Parent=Os03t0152200-00
Chr03	irgsp1_rep	exon	2873163	2873241	.	-	.	Parent=Os03t0152200-00
Chr03	irgsp1_rep	exon	2872974	2873072	.	-	.	Parent=Os03t0152200-00
Chr03	irgsp1_rep	mRNA	2878831	2880830	.	+	.	ID=Os03t0152300-01;Name=Os03t0152300-01;Locus_id=Os03g0152300;Oryzabase Gene Symbol Synonym(s)=prx36;Oryzabase Gene Name Synonym(s)=class III peroxidase 36;Note=Haem peroxidase family protein.;Transcript_evidence=AK070875 (DDBJ%2C Best hit);ORF_evidence=A2XCM0 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J023075H05;Oryzabase=14563;Expression=AK070875;TENOR=Os03t0152300-01;KEGG=Os03t0152300-01
Chr03	irgsp1_rep	five_prime_UTR	2878831	2878852	.	+	.	Parent=Os03t0152300-01
Chr03	irgsp1_rep	CDS	2878853	2879068	.	+	0	Parent=Os03t0152300-01
Chr03	irgsp1_rep	CDS	2879172	2880416	.	+	0	Parent=Os03t0152300-01
Chr03	irgsp1_rep	three_prime_UTR	2880417	2880830	.	+	.	Parent=Os03t0152300-01
Chr03	irgsp1_rep	mRNA	2883005	2887887	.	-	.	ID=Os03t0152400-01;Name=Os03t0152400-01;Locus_id=Os03g0152400;Oryzabase Gene Symbol Synonym(s)=OsACS1;Oryzabase Gene Name Synonym(s)=acyl-CoA synthetase 1;Note=Similar to 4-coumarate--CoA ligase-like 1.;Transcript_evidence=AK242087 (DDBJ%2C Best hit);ORF_evidence=Q0DV32 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873),AMP-binding%2C conserved site (IPR020845);NIAS_FLcDNA=J075140K23;Oryzabase=15666;TENOR=Os03t0152400-01;KEGG=Os03t0152400-01
Chr03	irgsp1_rep	five_prime_UTR	2887865	2887887	.	-	.	Parent=Os03t0152400-01
Chr03	irgsp1_rep	CDS	2886830	2887864	.	-	0	Parent=Os03t0152400-01
Chr03	irgsp1_rep	CDS	2885263	2885455	.	-	0	Parent=Os03t0152400-01
Chr03	irgsp1_rep	CDS	2884783	2884925	.	-	2	Parent=Os03t0152400-01
Chr03	irgsp1_rep	CDS	2883984	2884051	.	-	0	Parent=Os03t0152400-01
Chr03	irgsp1_rep	CDS	2883743	2883845	.	-	1	Parent=Os03t0152400-01
Chr03	irgsp1_rep	CDS	2883237	2883353	.	-	0	Parent=Os03t0152400-01
Chr03	irgsp1_rep	three_prime_UTR	2883005	2883236	.	-	.	Parent=Os03t0152400-01
Chr03	irgsp1_rep	mRNA	2886826	2887778	.	+	.	ID=Os03t0152500-00;Name=Os03t0152500-00;Locus_id=Os03g0152500;Note=Hypothetical protein.;Transcript_evidence=BT062457 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0152500-00
Chr03	irgsp1_rep	five_prime_UTR	2886826	2887072	.	+	.	Parent=Os03t0152500-00
Chr03	irgsp1_rep	CDS	2887073	2887778	.	+	0	Parent=Os03t0152500-00
Chr03	irgsp1_rep	mRNA	2897477	2900285	.	-	.	ID=Os03t0152600-01;Name=Os03t0152600-01;Locus_id=Os03g0152600;Note=Conserved hypothetical protein.;Transcript_evidence=AK109525 (DDBJ%2C Best hit);ORF_evidence=B8AND6 (UniProt);NIAS_FLcDNA=002-115-G08;Expression=AK109525;TENOR=Os03t0152600-01;KEGG=Os03t0152600-01
Chr03	irgsp1_rep	five_prime_UTR	2900230	2900285	.	-	.	Parent=Os03t0152600-01
Chr03	irgsp1_rep	CDS	2900001	2900229	.	-	0	Parent=Os03t0152600-01
Chr03	irgsp1_rep	CDS	2899628	2899728	.	-	2	Parent=Os03t0152600-01
Chr03	irgsp1_rep	CDS	2898458	2898574	.	-	0	Parent=Os03t0152600-01
Chr03	irgsp1_rep	CDS	2898284	2898385	.	-	0	Parent=Os03t0152600-01
Chr03	irgsp1_rep	CDS	2897682	2897852	.	-	0	Parent=Os03t0152600-01
Chr03	irgsp1_rep	three_prime_UTR	2897477	2897681	.	-	.	Parent=Os03t0152600-01
Chr03	irgsp1_rep	mRNA	2901596	2906614	.	+	.	ID=Os03t0152700-01;Name=Os03t0152700-01;Locus_id=Os03g0152700;RAP-DB Gene Symbol Synonym(s)=TCD3;RAP-DB Gene Name Synonym(s)=thermo-sensitive chlorophyll-deficient 3;Note=Pseudouridine (&Psi%3B) synthase%2C Chloroplast development at low temperature;Transcript_evidence=AK067387;ORF_evidence=Q10RN1;GO=Biological Process: pseudouridine synthesis (GO:0001522),Biological Process: RNA modification (GO:0009451),Molecular Function: RNA binding (GO:0003723),Molecular Function: pseudouridine synthase activity (GO:0009982),Molecular Function: intramolecular transferase activity (GO:0016866);InterPro=RNA-binding S4 domain superfamily (IPR036986),Pseudouridine synthase%2C catalytic domain superfamily (IPR020103),Pseudouridine synthase%2C RsuA/RluB/E/F%2C catalytic domain (IPR042092),RNA-binding S4 domain (IPR002942),Pseudouridine synthase%2C RsuA/RluA (IPR006145),Pseudouridine synthase%2C RsuA/RluB/E/F%2C conserved site (IPR018496);NIAS_FLcDNA=J013099O15;Manual Curation=May 27%2C 2020;Literature_PMID=32444695;Expression=AK067387;TENOR=Os03t0152700-01;KEGG=Os03t0152700-01;Subcellular location=chloroplast (GO:0009507)
Chr03	irgsp1_rep	five_prime_UTR	2901596	2901630	.	+	.	Parent=Os03t0152700-01
Chr03	irgsp1_rep	CDS	2901631	2902180	.	+	0	Parent=Os03t0152700-01
Chr03	irgsp1_rep	CDS	2902310	2902389	.	+	2	Parent=Os03t0152700-01
Chr03	irgsp1_rep	CDS	2902651	2902751	.	+	0	Parent=Os03t0152700-01
Chr03	irgsp1_rep	CDS	2902868	2902934	.	+	1	Parent=Os03t0152700-01
Chr03	irgsp1_rep	CDS	2903048	2903141	.	+	0	Parent=Os03t0152700-01
Chr03	irgsp1_rep	CDS	2903227	2903275	.	+	2	Parent=Os03t0152700-01
Chr03	irgsp1_rep	CDS	2903646	2903796	.	+	1	Parent=Os03t0152700-01
Chr03	irgsp1_rep	CDS	2904496	2904651	.	+	0	Parent=Os03t0152700-01
Chr03	irgsp1_rep	three_prime_UTR	2904652	2906614	.	+	.	Parent=Os03t0152700-01
Chr03	irgsp1_rep	mRNA	2907115	2912658	.	+	.	ID=Os03t0152800-01;Name=Os03t0152800-01;Locus_id=Os03g0152800;Note=Conserved hypothetical protein.;Transcript_evidence=AK066205 (DDBJ%2C Best hit);ORF_evidence=B9FBD7 (UniProt);NIAS_FLcDNA=J013059O10;TENOR=Os03t0152800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	2907115	2907115	.	+	.	Parent=Os03t0152800-01
Chr03	irgsp1_rep	CDS	2907116	2907359	.	+	0	Parent=Os03t0152800-01
Chr03	irgsp1_rep	CDS	2907724	2907725	.	+	2	Parent=Os03t0152800-01
Chr03	irgsp1_rep	three_prime_UTR	2907726	2908011	.	+	.	Parent=Os03t0152800-01
Chr03	irgsp1_rep	three_prime_UTR	2908256	2908333	.	+	.	Parent=Os03t0152800-01
Chr03	irgsp1_rep	three_prime_UTR	2908431	2909095	.	+	.	Parent=Os03t0152800-01
Chr03	irgsp1_rep	three_prime_UTR	2909528	2910115	.	+	.	Parent=Os03t0152800-01
Chr03	irgsp1_rep	three_prime_UTR	2910196	2910350	.	+	.	Parent=Os03t0152800-01
Chr03	irgsp1_rep	three_prime_UTR	2910690	2910895	.	+	.	Parent=Os03t0152800-01
Chr03	irgsp1_rep	three_prime_UTR	2910981	2911114	.	+	.	Parent=Os03t0152800-01
Chr03	irgsp1_rep	three_prime_UTR	2911196	2911497	.	+	.	Parent=Os03t0152800-01
Chr03	irgsp1_rep	three_prime_UTR	2911727	2911830	.	+	.	Parent=Os03t0152800-01
Chr03	irgsp1_rep	three_prime_UTR	2912071	2912658	.	+	.	Parent=Os03t0152800-01
Chr03	irgsp1_rep	mRNA	2907212	2912042	.	+	.	ID=Os03t0152800-02;Name=Os03t0152800-02;Locus_id=Os03g0152800;Note=Hypothetical conserved gene.;Transcript_evidence=AK100518 (DDBJ%2C Best hit);ORF_evidence=Q10RM9 (UniProt);NIAS_FLcDNA=J023100H08;Expression=AK100518;TENOR=Os03t0152800-02;KEGG=Os03t0152800-02
Chr03	irgsp1_rep	five_prime_UTR	2907212	2907359	.	+	.	Parent=Os03t0152800-02
Chr03	irgsp1_rep	five_prime_UTR	2907724	2907734	.	+	.	Parent=Os03t0152800-02
Chr03	irgsp1_rep	CDS	2907735	2908011	.	+	0	Parent=Os03t0152800-02
Chr03	irgsp1_rep	CDS	2908256	2908333	.	+	2	Parent=Os03t0152800-02
Chr03	irgsp1_rep	CDS	2908431	2909095	.	+	2	Parent=Os03t0152800-02
Chr03	irgsp1_rep	CDS	2909528	2910115	.	+	0	Parent=Os03t0152800-02
Chr03	irgsp1_rep	CDS	2910196	2910350	.	+	0	Parent=Os03t0152800-02
Chr03	irgsp1_rep	CDS	2910690	2910895	.	+	1	Parent=Os03t0152800-02
Chr03	irgsp1_rep	CDS	2910981	2911114	.	+	2	Parent=Os03t0152800-02
Chr03	irgsp1_rep	CDS	2911196	2911497	.	+	0	Parent=Os03t0152800-02
Chr03	irgsp1_rep	CDS	2911727	2911913	.	+	1	Parent=Os03t0152800-02
Chr03	irgsp1_rep	three_prime_UTR	2911914	2912042	.	+	.	Parent=Os03t0152800-02
Chr03	irgsp1_rep	mRNA	2909533	2912610	.	+	.	ID=Os03t0152800-03;Name=Os03t0152800-03;Locus_id=Os03g0152800;Note=Similar to predicted protein.;Transcript_evidence=AK062056 (DDBJ%2C Best hit);ORF_evidence=Q10RM8 (UniProt);NIAS_FLcDNA=001-044-C05;Expression=AK062056;TENOR=Os03t0152800-03;KEGG=Os03t0152800-03
Chr03	irgsp1_rep	five_prime_UTR	2909533	2909533	.	+	.	Parent=Os03t0152800-03
Chr03	irgsp1_rep	CDS	2909534	2910115	.	+	0	Parent=Os03t0152800-03
Chr03	irgsp1_rep	CDS	2910196	2910350	.	+	0	Parent=Os03t0152800-03
Chr03	irgsp1_rep	CDS	2910690	2910895	.	+	1	Parent=Os03t0152800-03
Chr03	irgsp1_rep	CDS	2910981	2911114	.	+	2	Parent=Os03t0152800-03
Chr03	irgsp1_rep	CDS	2911196	2911497	.	+	0	Parent=Os03t0152800-03
Chr03	irgsp1_rep	CDS	2911727	2911830	.	+	1	Parent=Os03t0152800-03
Chr03	irgsp1_rep	CDS	2912071	2912141	.	+	2	Parent=Os03t0152800-03
Chr03	irgsp1_rep	three_prime_UTR	2912142	2912610	.	+	.	Parent=Os03t0152800-03
Chr03	irgsp1_rep	mRNA	2913921	2922883	.	+	.	ID=Os03t0152900-01;Name=Os03t0152900-01;Locus_id=Os03g0152900;Note=Similar to predicted protein.;Transcript_evidence=AK288414 (DDBJ%2C Best hit);ORF_evidence=XP_002876276.1 (RefSeq);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=Armadillo (IPR000225),Kinesin%2C motor domain (IPR001752),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),Kinesin%2C motor region%2C conserved site (IPR019821);NIAS_FLcDNA=J090031D01;TENOR=Os03t0152900-01;KEGG=Os03t0152900-01
Chr03	irgsp1_rep	five_prime_UTR	2913921	2914019	.	+	.	Parent=Os03t0152900-01
Chr03	irgsp1_rep	CDS	2914020	2914179	.	+	0	Parent=Os03t0152900-01
Chr03	irgsp1_rep	CDS	2914760	2914860	.	+	2	Parent=Os03t0152900-01
Chr03	irgsp1_rep	CDS	2914954	2915074	.	+	0	Parent=Os03t0152900-01
Chr03	irgsp1_rep	CDS	2915431	2915618	.	+	2	Parent=Os03t0152900-01
Chr03	irgsp1_rep	CDS	2916240	2916461	.	+	0	Parent=Os03t0152900-01
Chr03	irgsp1_rep	CDS	2916548	2916701	.	+	0	Parent=Os03t0152900-01
Chr03	irgsp1_rep	CDS	2916787	2916936	.	+	2	Parent=Os03t0152900-01
Chr03	irgsp1_rep	CDS	2917103	2917191	.	+	2	Parent=Os03t0152900-01
Chr03	irgsp1_rep	CDS	2917845	2918057	.	+	0	Parent=Os03t0152900-01
Chr03	irgsp1_rep	CDS	2918393	2918527	.	+	0	Parent=Os03t0152900-01
Chr03	irgsp1_rep	CDS	2918674	2918853	.	+	0	Parent=Os03t0152900-01
Chr03	irgsp1_rep	CDS	2919217	2919324	.	+	0	Parent=Os03t0152900-01
Chr03	irgsp1_rep	CDS	2919428	2919553	.	+	0	Parent=Os03t0152900-01
Chr03	irgsp1_rep	CDS	2919634	2919763	.	+	0	Parent=Os03t0152900-01
Chr03	irgsp1_rep	CDS	2919850	2919942	.	+	2	Parent=Os03t0152900-01
Chr03	irgsp1_rep	CDS	2920280	2920405	.	+	2	Parent=Os03t0152900-01
Chr03	irgsp1_rep	CDS	2920739	2920864	.	+	2	Parent=Os03t0152900-01
Chr03	irgsp1_rep	CDS	2921626	2921769	.	+	2	Parent=Os03t0152900-01
Chr03	irgsp1_rep	CDS	2922324	2922452	.	+	2	Parent=Os03t0152900-01
Chr03	irgsp1_rep	CDS	2922571	2922713	.	+	2	Parent=Os03t0152900-01
Chr03	irgsp1_rep	three_prime_UTR	2922714	2922883	.	+	.	Parent=Os03t0152900-01
Chr03	irgsp1_rep	mRNA	2914758	2917205	.	-	.	ID=Os03t0152950-00;Name=Os03t0152950-00;Locus_id=Os03g0152950;Note=Non-protein coding transcript.;Transcript_evidence=BT085237 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0152950-00
Chr03	irgsp1_rep	exon	2917116	2917205	.	-	.	Parent=Os03t0152950-00
Chr03	irgsp1_rep	exon	2916636	2916946	.	-	.	Parent=Os03t0152950-00
Chr03	irgsp1_rep	exon	2916246	2916469	.	-	.	Parent=Os03t0152950-00
Chr03	irgsp1_rep	exon	2915413	2915626	.	-	.	Parent=Os03t0152950-00
Chr03	irgsp1_rep	exon	2914925	2915065	.	-	.	Parent=Os03t0152950-00
Chr03	irgsp1_rep	exon	2914758	2914829	.	-	.	Parent=Os03t0152950-00
Chr03	irgsp1_rep	mRNA	2922849	2924744	.	-	.	ID=Os03t0153000-00;Name=Os03t0153000-00;Locus_id=Os03g0153000;Note=Similar to cDNA clone:001-019-C07%2C full insert sequence.;Transcript_evidence=CT835172 (DDBJ%2C Best hit);ORF_evidence=Q337U3 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);TENOR=Os03t0153000-00;KEGG=Os03t0153000-00
Chr03	irgsp1_rep	CDS	2924659	2924744	.	-	0	Parent=Os03t0153000-00
Chr03	irgsp1_rep	CDS	2923243	2923357	.	-	1	Parent=Os03t0153000-00
Chr03	irgsp1_rep	CDS	2923127	2923162	.	-	0	Parent=Os03t0153000-00
Chr03	irgsp1_rep	three_prime_UTR	2922849	2923126	.	-	.	Parent=Os03t0153000-00
Chr03	irgsp1_rep	mRNA	2934839	2943217	.	+	.	ID=Os03t0153100-00;Name=Os03t0153100-00;Locus_id=Os03g0153100;Note=Similar to FAD binding domain containing protein%2C expressed.;Transcript_evidence=BT054188 (DDBJ);ORF_evidence=Q10RM1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Monooxygenase%2C FAD-binding (IPR002938),Aromatic-ring hydroxylase-like (IPR003042);TENOR=Os03t0153100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	2934839	2934945	.	+	0	Parent=Os03t0153100-00
Chr03	irgsp1_rep	CDS	2935095	2935241	.	+	1	Parent=Os03t0153100-00
Chr03	irgsp1_rep	CDS	2935934	2936002	.	+	1	Parent=Os03t0153100-00
Chr03	irgsp1_rep	CDS	2936079	2936244	.	+	1	Parent=Os03t0153100-00
Chr03	irgsp1_rep	CDS	2937111	2937279	.	+	0	Parent=Os03t0153100-00
Chr03	irgsp1_rep	CDS	2942558	2942617	.	+	2	Parent=Os03t0153100-00
Chr03	irgsp1_rep	CDS	2942699	2943216	.	+	2	Parent=Os03t0153100-00
Chr03	irgsp1_rep	three_prime_UTR	2943217	2943217	.	+	.	Parent=Os03t0153100-00
Chr03	irgsp1_rep	mRNA	2947355	2948285	.	-	.	ID=Os03t0153400-01;Name=Os03t0153400-01;Locus_id=Os03g0153400;Note=Similar to EMB1374.;Transcript_evidence=AK069915 (DDBJ%2C Best hit);ORF_evidence=B6UE68 (UniProt);InterPro=BolA protein (IPR002634),Fe-S metabolism associated domain%2C SufE-like (IPR003808);NIAS_FLcDNA=J023040L12;TENOR=Os03t0153400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	2948000	2948285	.	-	.	Parent=Os03t0153400-01
Chr03	irgsp1_rep	CDS	2947517	2947999	.	-	0	Parent=Os03t0153400-01
Chr03	irgsp1_rep	three_prime_UTR	2947355	2947516	.	-	.	Parent=Os03t0153400-01
Chr03	irgsp1_rep	mRNA	2951457	2952612	.	+	.	ID=Os03t0153500-00;Name=Os03t0153500-00;Locus_id=Os03g0153500;Note=Similar to FAD binding domain containing protein%2C expressed.;Transcript_evidence=CT837851 (DDBJ%2C Best hit);ORF_evidence=Q10RM1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Monooxygenase%2C FAD-binding (IPR002938),Aromatic-ring hydroxylase-like (IPR003042);TENOR=Os03t0153500-00;KEGG=Os03t0153500-00
Chr03	irgsp1_rep	five_prime_UTR	2951457	2951457	.	+	.	Parent=Os03t0153500-00
Chr03	irgsp1_rep	CDS	2951458	2951640	.	+	0	Parent=Os03t0153500-00
Chr03	irgsp1_rep	CDS	2951718	2951946	.	+	0	Parent=Os03t0153500-00
Chr03	irgsp1_rep	CDS	2952039	2952556	.	+	2	Parent=Os03t0153500-00
Chr03	irgsp1_rep	three_prime_UTR	2952557	2952612	.	+	.	Parent=Os03t0153500-00
Chr03	irgsp1_rep	mRNA	2958312	2960398	.	+	.	ID=Os03t0153900-01;Name=Os03t0153900-01;Locus_id=Os03g0153900;Note=Aromatic-ring hydroxylase family protein.;Transcript_evidence=AK106420 (DDBJ%2C Best hit);ORF_evidence=B6SZZ4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Monooxygenase%2C FAD-binding (IPR002938),Aromatic-ring hydroxylase-like (IPR003042);NIAS_FLcDNA=002-103-B02;Expression=AK106420;TENOR=Os03t0153900-01;KEGG=Os03t0153900-01
Chr03	irgsp1_rep	five_prime_UTR	2958312	2958545	.	+	.	Parent=Os03t0153900-01
Chr03	irgsp1_rep	CDS	2958546	2958631	.	+	0	Parent=Os03t0153900-01
Chr03	irgsp1_rep	CDS	2958725	2958871	.	+	1	Parent=Os03t0153900-01
Chr03	irgsp1_rep	CDS	2958954	2959022	.	+	1	Parent=Os03t0153900-01
Chr03	irgsp1_rep	CDS	2959171	2959336	.	+	1	Parent=Os03t0153900-01
Chr03	irgsp1_rep	CDS	2959421	2959649	.	+	0	Parent=Os03t0153900-01
Chr03	irgsp1_rep	CDS	2959741	2960267	.	+	2	Parent=Os03t0153900-01
Chr03	irgsp1_rep	three_prime_UTR	2960268	2960398	.	+	.	Parent=Os03t0153900-01
Chr03	irgsp1_rep	mRNA	2961746	2964295	.	+	.	ID=Os03t0154000-01;Name=Os03t0154000-01;Locus_id=Os03g0154000;Oryzabase Gene Name Synonym(s)=Aromatic-ring hydroxylase family protein;Note=Aromatic-ring hydroxylase family protein.;Transcript_evidence=AK103088 (DDBJ%2C Best hit);ORF_evidence=Q10RL7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Monooxygenase%2C FAD-binding (IPR002938),Aromatic-ring hydroxylase-like (IPR003042);NIAS_FLcDNA=J033118I15;Oryzabase=22039;Expression=AK103088;TENOR=Os03t0154000-01;KEGG=Os03t0154000-01
Chr03	irgsp1_rep	five_prime_UTR	2961746	2961817	.	+	.	Parent=Os03t0154000-01
Chr03	irgsp1_rep	CDS	2961818	2961903	.	+	0	Parent=Os03t0154000-01
Chr03	irgsp1_rep	CDS	2961987	2962133	.	+	1	Parent=Os03t0154000-01
Chr03	irgsp1_rep	CDS	2962820	2962888	.	+	1	Parent=Os03t0154000-01
Chr03	irgsp1_rep	CDS	2962971	2963136	.	+	1	Parent=Os03t0154000-01
Chr03	irgsp1_rep	CDS	2963213	2963441	.	+	0	Parent=Os03t0154000-01
Chr03	irgsp1_rep	CDS	2963548	2964101	.	+	2	Parent=Os03t0154000-01
Chr03	irgsp1_rep	three_prime_UTR	2964102	2964295	.	+	.	Parent=Os03t0154000-01
Chr03	irgsp1_rep	mRNA	2964716	2967286	.	+	.	ID=Os03t0154100-01;Name=Os03t0154100-01;Locus_id=Os03g0154100;Note=Aromatic-ring hydroxylase family protein.;Transcript_evidence=AK106358 (DDBJ%2C Best hit);ORF_evidence=B6SZZ4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Monooxygenase%2C FAD-binding (IPR002938),Aromatic-ring hydroxylase-like (IPR003042);NIAS_FLcDNA=002-102-A09;Expression=AK106358;TENOR=Os03t0154100-01;KEGG=Os03t0154100-01
Chr03	irgsp1_rep	five_prime_UTR	2964716	2964817	.	+	.	Parent=Os03t0154100-01
Chr03	irgsp1_rep	CDS	2964818	2964897	.	+	0	Parent=Os03t0154100-01
Chr03	irgsp1_rep	CDS	2965011	2965157	.	+	1	Parent=Os03t0154100-01
Chr03	irgsp1_rep	CDS	2965633	2965701	.	+	1	Parent=Os03t0154100-01
Chr03	irgsp1_rep	CDS	2965821	2965986	.	+	1	Parent=Os03t0154100-01
Chr03	irgsp1_rep	CDS	2966102	2966330	.	+	0	Parent=Os03t0154100-01
Chr03	irgsp1_rep	CDS	2966419	2966948	.	+	2	Parent=Os03t0154100-01
Chr03	irgsp1_rep	three_prime_UTR	2966949	2967286	.	+	.	Parent=Os03t0154100-01
Chr03	irgsp1_rep	mRNA	2968984	2982526	.	+	.	ID=Os03t0154300-01;Name=Os03t0154300-01;Locus_id=Os03g0154300;Note=Conserved hypothetical protein.;Transcript_evidence=AK241144 (DDBJ%2C Best hit);ORF_evidence=NP_001173272.1 (RefSeq);NIAS_FLcDNA=J065112A07;TENOR=Os03t0154300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	2968984	2969503	.	+	.	Parent=Os03t0154300-01
Chr03	irgsp1_rep	CDS	2969504	2970734	.	+	0	Parent=Os03t0154300-01
Chr03	irgsp1_rep	CDS	2970828	2970944	.	+	2	Parent=Os03t0154300-01
Chr03	irgsp1_rep	CDS	2971468	2971532	.	+	2	Parent=Os03t0154300-01
Chr03	irgsp1_rep	three_prime_UTR	2971533	2971539	.	+	.	Parent=Os03t0154300-01
Chr03	irgsp1_rep	three_prime_UTR	2981352	2981599	.	+	.	Parent=Os03t0154300-01
Chr03	irgsp1_rep	three_prime_UTR	2981783	2982526	.	+	.	Parent=Os03t0154300-01
Chr03	irgsp1_rep	mRNA	2986050	2989232	.	+	.	ID=Os03t0154700-01;Name=Os03t0154700-01;Locus_id=Os03g0154700;CGSNL Gene Symbol=RPS9-2;CGSNL Gene Name=RIBOSOMAL PROTEIN S9-2;Oryzabase Gene Symbol Synonym(s)=OsRPS9-2;Oryzabase Gene Name Synonym(s)=ribosomal protein S9-2%2C ribosomal protein small subunit 9-2;Note=Similar to 40S ribosomal protein S9.;Transcript_evidence=AK104111 (DDBJ%2C Best hit),AK061350 (DDBJ%2C Best hit),AK104265 (DDBJ%2C Best hit),AK104761 (DDBJ%2C Best hit);ORF_evidence=A2ZFU3 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: small ribosomal subunit (GO:0015935),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735),Molecular Function: rRNA binding (GO:0019843);InterPro=Ribosomal protein S4/S9%2C N-terminal (IPR001912),RNA-binding S4 (IPR002942),Ribosomal protein S4/S9%2C eukaryotic/archaeal (IPR005710),Ribosomal protein S4%2C conserved site (IPR018079),Ribosomal protein S4/S9 (IPR022801);NIAS_FLcDNA=006-202-G08,006-303-F09,006-310-G01,001-038-H02;Oryzabase=22174;TENOR=Os03t0154700-01
Chr03	irgsp1_rep	five_prime_UTR	2986050	2986115	.	+	.	Parent=Os03t0154700-01
Chr03	irgsp1_rep	CDS	2986116	2986143	.	+	0	Parent=Os03t0154700-01
Chr03	irgsp1_rep	CDS	2987483	2987864	.	+	2	Parent=Os03t0154700-01
Chr03	irgsp1_rep	CDS	2988740	2988917	.	+	1	Parent=Os03t0154700-01
Chr03	irgsp1_rep	three_prime_UTR	2988918	2989232	.	+	.	Parent=Os03t0154700-01
Chr03	irgsp1_rep	mRNA	2987483	2988911	.	-	.	ID=Os03t0154750-00;Name=Os03t0154750-00;Locus_id=Os03g0154750;Note=Hypothetical gene.;Transcript_evidence=BT016876 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0154750-00
Chr03	irgsp1_rep	five_prime_UTR	2988737	2988911	.	-	.	Parent=Os03t0154750-00
Chr03	irgsp1_rep	five_prime_UTR	2987833	2987861	.	-	.	Parent=Os03t0154750-00
Chr03	irgsp1_rep	CDS	2987548	2987832	.	-	0	Parent=Os03t0154750-00
Chr03	irgsp1_rep	three_prime_UTR	2987483	2987547	.	-	.	Parent=Os03t0154750-00
Chr03	irgsp1_rep	mRNA	2994392	2995344	.	+	.	ID=Os03t0155000-00;Name=Os03t0155000-00;Locus_id=Os03g0155000;Note=Monooxygenase%2C FAD-binding domain containing protein.;Transcript_evidence=FP097760 (DDBJ);ORF_evidence=Q10RK8 (UniProt);InterPro=Monooxygenase%2C FAD-binding (IPR002938);TENOR=Os03t0155000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	2994392	2994563	.	+	.	Parent=Os03t0155000-00
Chr03	irgsp1_rep	five_prime_UTR	2994657	2994798	.	+	.	Parent=Os03t0155000-00
Chr03	irgsp1_rep	CDS	2994799	2995344	.	+	0	Parent=Os03t0155000-00
Chr03	irgsp1_rep	mRNA	2998855	2999999	.	+	.	ID=Os03t0155300-00;Name=Os03t0155300-00;Locus_id=Os03g0155300;CGSNL Gene Symbol=EXPA12;CGSNL Gene Name=ALPHA-EXPANSIN 12;Oryzabase Gene Symbol Synonym(s)=OsEXPA12%2C OsEXP12%2C osaEXPa1.15;Oryzabase Gene Name Synonym(s)=expansin A12%2C Rice expansin-12%2C Expansin-A12%2C Alpha-expansin-12;Note=Similar to Alpha-expansin precursor.;Transcript_evidence=AY046929 (DDBJ%2C Best hit);ORF_evidence=Q7G6Z2 (UniProt);GO=Biological Process: plant-type cell wall organization (GO:0009664),Cellular Component: extracellular region (GO:0005576);InterPro=Expansin (IPR002963),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);Oryzabase=9375;Expression=AY046929;TENOR=Os03t0155300-00;KEGG=Os03t0155300-00
Chr03	irgsp1_rep	five_prime_UTR	2998855	2998905	.	+	.	Parent=Os03t0155300-00
Chr03	irgsp1_rep	CDS	2998906	2999029	.	+	0	Parent=Os03t0155300-00
Chr03	irgsp1_rep	CDS	2999121	2999439	.	+	2	Parent=Os03t0155300-00
Chr03	irgsp1_rep	CDS	2999528	2999837	.	+	1	Parent=Os03t0155300-00
Chr03	irgsp1_rep	three_prime_UTR	2999838	2999999	.	+	.	Parent=Os03t0155300-00
Chr03	irgsp1_rep	mRNA	2999161	2999885	.	-	.	ID=Os03t0155400-00;Name=Os03t0155400-00;Locus_id=Os03g0155400;Note=Non-protein coding transcript.;Transcript_evidence=BT016845 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0155400-00
Chr03	irgsp1_rep	exon	2999524	2999885	.	-	.	Parent=Os03t0155400-00
Chr03	irgsp1_rep	exon	2999161	2999435	.	-	.	Parent=Os03t0155400-00
Chr03	irgsp1_rep	mRNA	3003413	3004537	.	-	.	ID=Os03t0155500-00;Name=Os03t0155500-00;Locus_id=Os03g0155500;CGSNL Gene Symbol=EXPA25;CGSNL Gene Name=ALPHA-EXPANSIN 25;Oryzabase Gene Symbol Synonym(s)=OsEXPA25%2C OsEXP25%2C osaEXPa1.6;Oryzabase Gene Name Synonym(s)=Rice expansin-25%2C Expansin-A25%2C Alpha-expansin-25;Note=Similar to Expansin-A25.;Transcript_evidence=DQ061066 (DDBJ%2C Best hit);ORF_evidence=Q4PR41 (UniProt);GO=Biological Process: plant-type cell wall organization (GO:0009664),Cellular Component: extracellular region (GO:0005576);InterPro=Expansin (IPR002963),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);Oryzabase=9389;TENOR=Os03t0155500-00;KEGG=Os03t0155500-00
Chr03	irgsp1_rep	five_prime_UTR	3004537	3004537	.	-	.	Parent=Os03t0155500-00
Chr03	irgsp1_rep	CDS	3004443	3004536	.	-	0	Parent=Os03t0155500-00
Chr03	irgsp1_rep	CDS	3004010	3004331	.	-	2	Parent=Os03t0155500-00
Chr03	irgsp1_rep	CDS	3003463	3003775	.	-	1	Parent=Os03t0155500-00
Chr03	irgsp1_rep	three_prime_UTR	3003413	3003462	.	-	.	Parent=Os03t0155500-00
Chr03	irgsp1_rep	mRNA	3003478	3004291	.	+	.	ID=Os03t0155566-00;Name=Os03t0155566-00;Locus_id=Os03g0155566;Note=Hypothetical protein.;Transcript_evidence=BT016845 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0155566-00
Chr03	irgsp1_rep	CDS	3003478	3003779	.	+	0	Parent=Os03t0155566-00
Chr03	irgsp1_rep	CDS	3004014	3004291	.	+	1	Parent=Os03t0155566-00
Chr03	irgsp1_rep	mRNA	3006357	3007060	.	+	.	ID=Os03t0155632-00;Name=Os03t0155632-00;Locus_id=Os03g0155632;Note=Non-protein coding transcript.;Transcript_evidence=BT016845 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0155632-00
Chr03	irgsp1_rep	exon	3006357	3006650	.	+	.	Parent=Os03t0155632-00
Chr03	irgsp1_rep	exon	3006790	3007060	.	+	.	Parent=Os03t0155632-00
Chr03	irgsp1_rep	mRNA	3006419	3007309	.	-	.	ID=Os03t0155700-00;Name=Os03t0155700-00;Locus_id=Os03g0155700;CGSNL Gene Symbol=EXPA15;CGSNL Gene Name=ALPHA-EXPANSIN 15;Oryzabase Gene Symbol Synonym(s)=OsEXPA15%2C OsEXP15%2C osaEXPa1.8;Oryzabase Gene Name Synonym(s)=expansin A15%2C Rice expansin-15%2C Expansin-A15%2C Alpha-expansin-15;Note=Similar to Expansin-A15.;Transcript_evidence=DQ061057 (DDBJ%2C Best hit);ORF_evidence=Q4PR50 (UniProt);GO=Biological Process: plant-type cell wall organization (GO:0009664),Cellular Component: extracellular region (GO:0005576);InterPro=Expansin (IPR002963),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);Oryzabase=9378;TENOR=Os03t0155700-00
Chr03	irgsp1_rep	five_prime_UTR	3007308	3007309	.	-	.	Parent=Os03t0155700-00
Chr03	irgsp1_rep	CDS	3007190	3007307	.	-	0	Parent=Os03t0155700-00
Chr03	irgsp1_rep	CDS	3006779	3007100	.	-	2	Parent=Os03t0155700-00
Chr03	irgsp1_rep	CDS	3006419	3006642	.	-	1	Parent=Os03t0155700-00
Chr03	irgsp1_rep	mRNA	3021246	3022564	.	+	.	ID=Os03t0155900-01;Name=Os03t0155900-01;Locus_id=Os03g0155900;CGSNL Gene Symbol=EXPA18;CGSNL Gene Name=ALPHA-EXPANSIN 18;Oryzabase Gene Symbol Synonym(s)=OsEXPA18%2C OsEXP18%2C osaEXPa1.3;Oryzabase Gene Name Synonym(s)=Rice expansin-18%2C Expansin-A18%2C Alpha-expansin-18;Note=Alpha-expansin OsEXPA18.;Transcript_evidence=AK243246 (DDBJ%2C Best hit);ORF_evidence=Q4PR48 (UniProt);GO=Biological Process: plant-type cell wall organization (GO:0009664),Cellular Component: extracellular region (GO:0005576);InterPro=Expansin (IPR002963),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);NIAS_FLcDNA=J100047F23;Oryzabase=9381;TENOR=Os03t0155900-01;KEGG=Os03t0155900-01
Chr03	irgsp1_rep	five_prime_UTR	3021246	3021265	.	+	.	Parent=Os03t0155900-01
Chr03	irgsp1_rep	CDS	3021266	3021386	.	+	0	Parent=Os03t0155900-01
Chr03	irgsp1_rep	CDS	3021564	3021879	.	+	2	Parent=Os03t0155900-01
Chr03	irgsp1_rep	CDS	3022060	3022372	.	+	1	Parent=Os03t0155900-01
Chr03	irgsp1_rep	three_prime_UTR	3022373	3022564	.	+	.	Parent=Os03t0155900-01
Chr03	irgsp1_rep	mRNA	3021284	3021392	.	-	.	ID=Os03t0155933-00;Name=Os03t0155933-00;Locus_id=Os03g0155933;Note=Non-protein coding transcript.;Transcript_evidence=BT084397 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0155933-00
Chr03	irgsp1_rep	exon	3021284	3021392	.	-	.	Parent=Os03t0155933-00
Chr03	irgsp1_rep	mRNA	3021604	3022348	.	-	.	ID=Os03t0155966-00;Name=Os03t0155966-00;Locus_id=Os03g0155966;Note=Non-protein coding transcript.;Transcript_evidence=BT016845 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0155966-00
Chr03	irgsp1_rep	exon	3022033	3022348	.	-	.	Parent=Os03t0155966-00
Chr03	irgsp1_rep	exon	3021604	3021851	.	-	.	Parent=Os03t0155966-00
Chr03	irgsp1_rep	mRNA	3026522	3027521	.	+	.	ID=Os03t0156000-00;Name=Os03t0156000-00;Locus_id=Os03g0156000;CGSNL Gene Symbol=EXPA19;CGSNL Gene Name=ALPHA-EXPANSIN 19;Oryzabase Gene Symbol Synonym(s)=OsEXPA19%2C OsEXP19%2C osaEXPa1.2;Oryzabase Gene Name Synonym(s)=Rice expansin-19%2C Expansin-A19%2C Alpha-expansin-19;Note=Alpha-expansin OsEXPA19.;Transcript_evidence=DQ061060 (DDBJ%2C Best hit);ORF_evidence=Q7G6Z5 (UniProt);GO=Biological Process: plant-type cell wall organization (GO:0009664),Cellular Component: extracellular region (GO:0005576);InterPro=Expansin (IPR002963),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);Oryzabase=9382;TENOR=Os03t0156000-00;KEGG=Os03t0156000-00
Chr03	irgsp1_rep	five_prime_UTR	3026522	3026535	.	+	.	Parent=Os03t0156000-00
Chr03	irgsp1_rep	CDS	3026536	3026656	.	+	0	Parent=Os03t0156000-00
Chr03	irgsp1_rep	CDS	3026774	3027089	.	+	2	Parent=Os03t0156000-00
Chr03	irgsp1_rep	CDS	3027195	3027507	.	+	1	Parent=Os03t0156000-00
Chr03	irgsp1_rep	three_prime_UTR	3027508	3027521	.	+	.	Parent=Os03t0156000-00
Chr03	irgsp1_rep	mRNA	3026554	3026662	.	-	.	ID=Os03t0156100-00;Name=Os03t0156100-00;Locus_id=Os03g0156100;Note=Non-protein coding transcript.;Transcript_evidence=BT084397 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0156100-00
Chr03	irgsp1_rep	exon	3026554	3026662	.	-	.	Parent=Os03t0156100-00
Chr03	irgsp1_rep	mRNA	3026814	3027483	.	-	.	ID=Os03t0156200-00;Name=Os03t0156200-00;Locus_id=Os03g0156200;Note=Non-protein coding transcript.;Transcript_evidence=BT016845 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0156200-00
Chr03	irgsp1_rep	exon	3027175	3027483	.	-	.	Parent=Os03t0156200-00
Chr03	irgsp1_rep	exon	3026814	3027078	.	-	.	Parent=Os03t0156200-00
Chr03	irgsp1_rep	mRNA	3036386	3037894	.	+	.	ID=Os03t0156300-00;Name=Os03t0156300-00;Locus_id=Os03g0156300;CGSNL Gene Symbol=EXPA20;CGSNL Gene Name=ALPHA-EXPANSIN 20;Oryzabase Gene Symbol Synonym(s)=OsEXPA20%2C OsEXP20%2C osaEXPa1.1;Oryzabase Gene Name Synonym(s)=Rice expansin-20%2C Expansin-A20%2C Alpha-expansin-20;Note=Alpha-expansin OsEXPA20.;Transcript_evidence=DQ061061 (DDBJ%2C Best hit);ORF_evidence=Q10RK1 (UniProt);GO=Biological Process: plant-type cell wall organization (GO:0009664),Cellular Component: extracellular region (GO:0005576);InterPro=Expansin (IPR002963),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);Oryzabase=9383;TENOR=Os03t0156300-00;KEGG=Os03t0156300-00
Chr03	irgsp1_rep	five_prime_UTR	3036386	3036404	.	+	.	Parent=Os03t0156300-00
Chr03	irgsp1_rep	CDS	3036405	3036525	.	+	0	Parent=Os03t0156300-00
Chr03	irgsp1_rep	CDS	3037182	3037470	.	+	2	Parent=Os03t0156300-00
Chr03	irgsp1_rep	CDS	3037577	3037889	.	+	1	Parent=Os03t0156300-00
Chr03	irgsp1_rep	three_prime_UTR	3037890	3037894	.	+	.	Parent=Os03t0156300-00
Chr03	irgsp1_rep	mRNA	3036423	3036531	.	-	.	ID=Os03t0156366-00;Name=Os03t0156366-00;Locus_id=Os03g0156366;Note=Non-protein coding transcript.;Transcript_evidence=BT084397 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0156366-00
Chr03	irgsp1_rep	exon	3036423	3036531	.	-	.	Parent=Os03t0156366-00
Chr03	irgsp1_rep	mRNA	3037227	3037865	.	-	.	ID=Os03t0156432-00;Name=Os03t0156432-00;Locus_id=Os03g0156432;Note=Non-protein coding transcript.;Transcript_evidence=BT016845 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0156432-00
Chr03	irgsp1_rep	exon	3037573	3037865	.	-	.	Parent=Os03t0156432-00
Chr03	irgsp1_rep	exon	3037227	3037466	.	-	.	Parent=Os03t0156432-00
Chr03	irgsp1_rep	mRNA	3039764	3045332	.	+	.	ID=Os03t0156500-01;Name=Os03t0156500-01;Locus_id=Os03g0156500;Note=RNA-binding protein Lupus La domain containing protein.;Transcript_evidence=AK103466 (DDBJ%2C Best hit);ORF_evidence=A2XCP4 (UniProt);InterPro=RNA-binding protein Lupus La (IPR006630),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=J033129N23;Expression=AK103466;TENOR=Os03t0156500-01;KEGG=Os03t0156500-01
Chr03	irgsp1_rep	five_prime_UTR	3039764	3040061	.	+	.	Parent=Os03t0156500-01
Chr03	irgsp1_rep	CDS	3040062	3040349	.	+	0	Parent=Os03t0156500-01
Chr03	irgsp1_rep	CDS	3040450	3040966	.	+	0	Parent=Os03t0156500-01
Chr03	irgsp1_rep	CDS	3041048	3041201	.	+	2	Parent=Os03t0156500-01
Chr03	irgsp1_rep	CDS	3041289	3041379	.	+	1	Parent=Os03t0156500-01
Chr03	irgsp1_rep	CDS	3042769	3042840	.	+	0	Parent=Os03t0156500-01
Chr03	irgsp1_rep	CDS	3044579	3044902	.	+	0	Parent=Os03t0156500-01
Chr03	irgsp1_rep	three_prime_UTR	3044903	3045332	.	+	.	Parent=Os03t0156500-01
Chr03	irgsp1_rep	mRNA	3046791	3047782	.	-	.	ID=Os03t0156600-01;Name=Os03t0156600-01;Locus_id=Os03g0156600;CGSNL Gene Symbol=HMP19;CGSNL Gene Name=HEAVY METAL-ASSOCIATED PROTEIN 19;Oryzabase Gene Symbol Synonym(s)=OsHMP19;Oryzabase Gene Name Synonym(s)=Heavy metal-associated protein 19;Note=Similar to Farnesylated protein (ATFP6).;Transcript_evidence=AK105367 (DDBJ%2C Best hit);ORF_evidence=Q01HL4 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);NIAS_FLcDNA=001-119-G06;Oryzabase=23541;Expression=AK105367;TENOR=Os03t0156600-01;KEGG=Os03t0156600-01
Chr03	irgsp1_rep	five_prime_UTR	3047704	3047782	.	-	.	Parent=Os03t0156600-01
Chr03	irgsp1_rep	CDS	3047623	3047703	.	-	0	Parent=Os03t0156600-01
Chr03	irgsp1_rep	CDS	3047066	3047452	.	-	0	Parent=Os03t0156600-01
Chr03	irgsp1_rep	three_prime_UTR	3046791	3047065	.	-	.	Parent=Os03t0156600-01
Chr03	irgsp1_rep	mRNA	3048617	3051742	.	-	.	ID=Os03t0156700-01;Name=Os03t0156700-01;Locus_id=Os03g0156700;RAP-DB Gene Symbol Synonym(s)=OsZNL;RAP-DB Gene Name Synonym(s)=ZN-like%2C zebra-necrosis like protein;Oryzabase Gene Symbol Synonym(s)=OsZNL;Oryzabase Gene Name Synonym(s)=zebra-necrosis like protein;Note=Zebra-necrosis like protein%2C Nickel/cobalt transporter%2C high-affinity domain containing protein;Transcript_evidence=AK108804;ORF_evidence=B1A8U0;InterPro=Urease accessory protein UreH-like%2C transmembrane domain (IPR039447);NIAS_FLcDNA=002-151-C12;Manual Curation=October 6%2C 2020;Literature_PMID=20202171;Oryzabase=14284;Expression=AK108804;TENOR=Os03t0156700-01;KEGG=Os03t0156700-01
Chr03	irgsp1_rep	five_prime_UTR	3051648	3051742	.	-	.	Parent=Os03t0156700-01
Chr03	irgsp1_rep	CDS	3051390	3051647	.	-	0	Parent=Os03t0156700-01
Chr03	irgsp1_rep	CDS	3048745	3049557	.	-	0	Parent=Os03t0156700-01
Chr03	irgsp1_rep	three_prime_UTR	3048617	3048744	.	-	.	Parent=Os03t0156700-01
Chr03	irgsp1_rep	mRNA	3053315	3064760	.	-	.	ID=Os03t0157000-00;Name=Os03t0157000-00;Locus_id=Os03g0157000;Oryzabase Gene Symbol Synonym(s)=Os_F0404;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8LMQ2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17492;TENOR=Os03t0157000-00
Chr03	irgsp1_rep	CDS	3064659	3064760	.	-	0	Parent=Os03t0157000-00
Chr03	irgsp1_rep	CDS	3054012	3055115	.	-	0	Parent=Os03t0157000-00
Chr03	irgsp1_rep	CDS	3053745	3053888	.	-	0	Parent=Os03t0157000-00
Chr03	irgsp1_rep	CDS	3053315	3053647	.	-	0	Parent=Os03t0157000-00
Chr03	irgsp1_rep	mRNA	3068969	3074023	.	+	.	ID=Os03t0157300-01;Name=Os03t0157300-01;Locus_id=Os03g0157300;RAP-DB Gene Symbol Synonym(s)=OsMCA1;RAP-DB Gene Name Synonym(s)=Mid1-complementing activity1%2C Plasma membrane protein OsMCA1;CGSNL Gene Symbol=DMT1;CGSNL Gene Name=DWARF AND MULTI-TILLERING1;Oryzabase Gene Symbol Synonym(s)=OsMCA1%2C MCA1%2C OsDMT1%2C OsDMT1/OsMCA1;Oryzabase Gene Name Synonym(s)=Plasma membrane protein OsMCA1%2C Mid1-complementing activity1%2C dwarf and multi-tillering 1;Note=Ca2+-permeable mechanosensitive channel%2C Regulation of plasma membrane Ca2+ influx%2C ROS generation induced by hypo-osmotic stress;Transcript_evidence=AB601973,AK103362;ORF_evidence=Q10RJ5;InterPro=PLAC8 motif-containing protein (IPR006461);NIAS_FLcDNA=J033126N07;Manual Curation=September 18%2C 2015;Literature_PMID=22264357,25307286;Oryzabase=9792;Expression=AK103362;TENOR=Os03t0157300-01;KEGG=Os03t0157300-01
Chr03	irgsp1_rep	five_prime_UTR	3068969	3069373	.	+	.	Parent=Os03t0157300-01
Chr03	irgsp1_rep	five_prime_UTR	3069464	3069681	.	+	.	Parent=Os03t0157300-01
Chr03	irgsp1_rep	CDS	3069682	3070089	.	+	0	Parent=Os03t0157300-01
Chr03	irgsp1_rep	CDS	3070627	3071045	.	+	0	Parent=Os03t0157300-01
Chr03	irgsp1_rep	CDS	3071382	3071488	.	+	1	Parent=Os03t0157300-01
Chr03	irgsp1_rep	CDS	3072205	3072276	.	+	2	Parent=Os03t0157300-01
Chr03	irgsp1_rep	CDS	3072646	3072752	.	+	2	Parent=Os03t0157300-01
Chr03	irgsp1_rep	CDS	3073136	3073229	.	+	0	Parent=Os03t0157300-01
Chr03	irgsp1_rep	CDS	3073753	3073802	.	+	2	Parent=Os03t0157300-01
Chr03	irgsp1_rep	three_prime_UTR	3073803	3074023	.	+	.	Parent=Os03t0157300-01
Chr03	irgsp1_rep	mRNA	3069193	3074025	.	+	.	ID=Os03t0157300-02;Name=Os03t0157300-02;Locus_id=Os03g0157300;CGSNL Gene Symbol=DMT1;CGSNL Gene Name=DWARF AND MULTI-TILLERING1;Oryzabase Gene Symbol Synonym(s)=OsMCA1%2C MCA1%2C OsDMT1%2C OsDMT1/OsMCA1;Oryzabase Gene Name Synonym(s)=Plasma membrane protein OsMCA1%2C Mid1-complementing activity1%2C dwarf and multi-tillering 1;Note=Protein of unknown function Cys-rich family protein.;Transcript_evidence=AK063160 (DDBJ%2C Best hit);ORF_evidence=NP_001182136.1 (RefSeq);InterPro=Uncharacterised protein family Cys-rich (IPR006461);NIAS_FLcDNA=001-044-H09;Oryzabase=9792;Expression=AK063160;TENOR=Os03t0157300-02;KEGG=Os03t0157300-02
Chr03	irgsp1_rep	five_prime_UTR	3069193	3069373	.	+	.	Parent=Os03t0157300-02
Chr03	irgsp1_rep	five_prime_UTR	3069464	3069681	.	+	.	Parent=Os03t0157300-02
Chr03	irgsp1_rep	CDS	3069682	3070089	.	+	0	Parent=Os03t0157300-02
Chr03	irgsp1_rep	CDS	3070627	3071045	.	+	0	Parent=Os03t0157300-02
Chr03	irgsp1_rep	CDS	3071382	3071488	.	+	1	Parent=Os03t0157300-02
Chr03	irgsp1_rep	CDS	3072205	3072276	.	+	2	Parent=Os03t0157300-02
Chr03	irgsp1_rep	CDS	3072646	3072752	.	+	2	Parent=Os03t0157300-02
Chr03	irgsp1_rep	CDS	3073136	3073229	.	+	0	Parent=Os03t0157300-02
Chr03	irgsp1_rep	CDS	3073753	3073802	.	+	2	Parent=Os03t0157300-02
Chr03	irgsp1_rep	three_prime_UTR	3073803	3074025	.	+	.	Parent=Os03t0157300-02
Chr03	irgsp1_rep	mRNA	3076031	3085989	.	-	.	ID=Os03t0157400-01;Name=Os03t0157400-01;Locus_id=Os03g0157400;CGSNL Gene Symbol=ABCG4;CGSNL Gene Name=ABC TRANSPORTER G FAMILY MEMBER 4;Oryzabase Gene Symbol Synonym(s)=OsABCG4;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 4;Note=ABC transporter-like domain containing protein.;Transcript_evidence=AK066035 (DDBJ%2C Best hit);ORF_evidence=XP_002322764.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC-2 type transporter (IPR013525),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=J013047J21;Oryzabase=11983;Expression=AK066035;TENOR=Os03t0157400-01;KEGG=Os03t0157400-01
Chr03	irgsp1_rep	five_prime_UTR	3085760	3085989	.	-	.	Parent=Os03t0157400-01
Chr03	irgsp1_rep	CDS	3085303	3085759	.	-	0	Parent=Os03t0157400-01
Chr03	irgsp1_rep	CDS	3084947	3085017	.	-	2	Parent=Os03t0157400-01
Chr03	irgsp1_rep	CDS	3084607	3084833	.	-	0	Parent=Os03t0157400-01
Chr03	irgsp1_rep	CDS	3082717	3082872	.	-	1	Parent=Os03t0157400-01
Chr03	irgsp1_rep	CDS	3082445	3082628	.	-	1	Parent=Os03t0157400-01
Chr03	irgsp1_rep	CDS	3082057	3082374	.	-	0	Parent=Os03t0157400-01
Chr03	irgsp1_rep	CDS	3081685	3081972	.	-	0	Parent=Os03t0157400-01
Chr03	irgsp1_rep	CDS	3081240	3081524	.	-	0	Parent=Os03t0157400-01
Chr03	irgsp1_rep	CDS	3076605	3076712	.	-	0	Parent=Os03t0157400-01
Chr03	irgsp1_rep	CDS	3076273	3076494	.	-	0	Parent=Os03t0157400-01
Chr03	irgsp1_rep	three_prime_UTR	3076031	3076272	.	-	.	Parent=Os03t0157400-01
Chr03	irgsp1_rep	mRNA	3076026	3083674	.	-	.	ID=Os03t0157400-02;Name=Os03t0157400-02;Locus_id=Os03g0157400;CGSNL Gene Symbol=ABCG4;CGSNL Gene Name=ABC TRANSPORTER G FAMILY MEMBER 4;Oryzabase Gene Symbol Synonym(s)=OsABCG4;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 4;Note=Similar to white-brown-complex ABC transporter family.;Transcript_evidence=AK121798 (DDBJ%2C Best hit);ORF_evidence=XP_002322764.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887);InterPro=ABC transporter-like (IPR003439),ABC-2 type transporter (IPR013525),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=J033096H22;Oryzabase=11983;Expression=AK121798;TENOR=Os03t0157400-02;KEGG=Os03t0157400-02
Chr03	irgsp1_rep	five_prime_UTR	3083524	3083674	.	-	.	Parent=Os03t0157400-02
Chr03	irgsp1_rep	CDS	3083510	3083523	.	-	0	Parent=Os03t0157400-02
Chr03	irgsp1_rep	CDS	3082717	3082872	.	-	1	Parent=Os03t0157400-02
Chr03	irgsp1_rep	CDS	3082445	3082628	.	-	1	Parent=Os03t0157400-02
Chr03	irgsp1_rep	CDS	3082057	3082374	.	-	0	Parent=Os03t0157400-02
Chr03	irgsp1_rep	CDS	3081685	3081972	.	-	0	Parent=Os03t0157400-02
Chr03	irgsp1_rep	CDS	3081186	3081524	.	-	0	Parent=Os03t0157400-02
Chr03	irgsp1_rep	three_prime_UTR	3076605	3081185	.	-	.	Parent=Os03t0157400-02
Chr03	irgsp1_rep	three_prime_UTR	3076026	3076494	.	-	.	Parent=Os03t0157400-02
Chr03	irgsp1_rep	mRNA	3079168	3080570	.	+	.	ID=Os03t0157450-00;Name=Os03t0157450-00;Locus_id=Os03g0157450;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8LMQ4 (UniProt);InterPro=Myb/SANT-like domain (IPR024752);TENOR=Os03t0157450-00;KEGG=Os03t0157450-00
Chr03	irgsp1_rep	CDS	3079168	3079310	.	+	0	Parent=Os03t0157450-00
Chr03	irgsp1_rep	CDS	3079524	3079872	.	+	1	Parent=Os03t0157450-00
Chr03	irgsp1_rep	CDS	3079968	3080570	.	+	0	Parent=Os03t0157450-00
Chr03	irgsp1_rep	mRNA	3091858	3095644	.	+	.	ID=Os03t0157500-01;Name=Os03t0157500-01;Locus_id=Os03g0157500;Note=Similar to FH protein interacting protein FIP2.;Transcript_evidence=AK073432 (DDBJ%2C Best hit);ORF_evidence=B6TKK7 (UniProt);GO=Biological Process: potassium ion transport (GO:0006813),Cellular Component: voltage-gated potassium channel complex (GO:0008076),Cellular Component: membrane (GO:0016020),Molecular Function: voltage-gated potassium channel activity (GO:0005249),Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),Pentapeptide repeat (IPR001646),Potassium channel%2C voltage dependent%2C Kv%2C tetramerisation (IPR003131),BTB/POZ fold (IPR011333);NIAS_FLcDNA=J033041M08;Expression=AK073432;TENOR=Os03t0157500-01;KEGG=Os03t0157500-01
Chr03	irgsp1_rep	five_prime_UTR	3091858	3092115	.	+	.	Parent=Os03t0157500-01
Chr03	irgsp1_rep	CDS	3092116	3092167	.	+	0	Parent=Os03t0157500-01
Chr03	irgsp1_rep	CDS	3092265	3092374	.	+	2	Parent=Os03t0157500-01
Chr03	irgsp1_rep	CDS	3092447	3092581	.	+	0	Parent=Os03t0157500-01
Chr03	irgsp1_rep	CDS	3092674	3092829	.	+	0	Parent=Os03t0157500-01
Chr03	irgsp1_rep	CDS	3093006	3093089	.	+	0	Parent=Os03t0157500-01
Chr03	irgsp1_rep	CDS	3093282	3093328	.	+	0	Parent=Os03t0157500-01
Chr03	irgsp1_rep	CDS	3093518	3093591	.	+	1	Parent=Os03t0157500-01
Chr03	irgsp1_rep	CDS	3093847	3093905	.	+	2	Parent=Os03t0157500-01
Chr03	irgsp1_rep	CDS	3094362	3094421	.	+	0	Parent=Os03t0157500-01
Chr03	irgsp1_rep	CDS	3095039	3095119	.	+	0	Parent=Os03t0157500-01
Chr03	irgsp1_rep	CDS	3095246	3095299	.	+	0	Parent=Os03t0157500-01
Chr03	irgsp1_rep	three_prime_UTR	3095300	3095644	.	+	.	Parent=Os03t0157500-01
Chr03	irgsp1_rep	mRNA	3096030	3096880	.	-	.	ID=Os03t0157600-00;Name=Os03t0157600-00;Locus_id=Os03g0157600;Note=Heat shock protein Hsp20 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8LMQ7 (UniProt);InterPro=Heat shock protein Hsp20 (IPR002068),HSP20-like chaperone (IPR008978);TENOR=Os03t0157600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	3096791	3096880	.	-	0	Parent=Os03t0157600-00
Chr03	irgsp1_rep	CDS	3096675	3096762	.	-	0	Parent=Os03t0157600-00
Chr03	irgsp1_rep	CDS	3096030	3096550	.	-	2	Parent=Os03t0157600-00
Chr03	irgsp1_rep	mRNA	3097965	3102110	.	+	.	ID=Os03t0157700-01;Name=Os03t0157700-01;Locus_id=Os03g0157700;Note=Protein of unknown function DUF639 family protein.;Transcript_evidence=AK102075 (DDBJ%2C Best hit);ORF_evidence=Q8LMQ8 (UniProt);InterPro=Protein of unknown function DUF639 (IPR006927);NIAS_FLcDNA=J033082H02;Expression=AK102075;TENOR=Os03t0157700-01;KEGG=Os03t0157700-01
Chr03	irgsp1_rep	five_prime_UTR	3097965	3098052	.	+	.	Parent=Os03t0157700-01
Chr03	irgsp1_rep	CDS	3098053	3098159	.	+	0	Parent=Os03t0157700-01
Chr03	irgsp1_rep	CDS	3098716	3098950	.	+	1	Parent=Os03t0157700-01
Chr03	irgsp1_rep	CDS	3099039	3099146	.	+	0	Parent=Os03t0157700-01
Chr03	irgsp1_rep	CDS	3099222	3099391	.	+	0	Parent=Os03t0157700-01
Chr03	irgsp1_rep	CDS	3099820	3099953	.	+	1	Parent=Os03t0157700-01
Chr03	irgsp1_rep	CDS	3100069	3100240	.	+	2	Parent=Os03t0157700-01
Chr03	irgsp1_rep	CDS	3100373	3100925	.	+	1	Parent=Os03t0157700-01
Chr03	irgsp1_rep	CDS	3101049	3101161	.	+	0	Parent=Os03t0157700-01
Chr03	irgsp1_rep	CDS	3101264	3101506	.	+	1	Parent=Os03t0157700-01
Chr03	irgsp1_rep	CDS	3101613	3101865	.	+	1	Parent=Os03t0157700-01
Chr03	irgsp1_rep	three_prime_UTR	3101866	3102110	.	+	.	Parent=Os03t0157700-01
Chr03	irgsp1_rep	mRNA	3097965	3102105	.	+	.	ID=Os03t0157700-02;Name=Os03t0157700-02;Locus_id=Os03g0157700;Note=Hypothetical conserved gene.;Transcript_evidence=AK106245 (DDBJ%2C Best hit);ORF_evidence=A2XCQ2 (UniProt);InterPro=Protein of unknown function DUF639 (IPR006927);NIAS_FLcDNA=002-100-D05;Expression=AK106245;TENOR=Os03t0157700-02;KEGG=Os03t0157700-02
Chr03	irgsp1_rep	five_prime_UTR	3097965	3098052	.	+	.	Parent=Os03t0157700-02
Chr03	irgsp1_rep	CDS	3098053	3098159	.	+	0	Parent=Os03t0157700-02
Chr03	irgsp1_rep	CDS	3098716	3098950	.	+	1	Parent=Os03t0157700-02
Chr03	irgsp1_rep	CDS	3099039	3099146	.	+	0	Parent=Os03t0157700-02
Chr03	irgsp1_rep	CDS	3099222	3099391	.	+	0	Parent=Os03t0157700-02
Chr03	irgsp1_rep	CDS	3099820	3099953	.	+	1	Parent=Os03t0157700-02
Chr03	irgsp1_rep	CDS	3100069	3100240	.	+	2	Parent=Os03t0157700-02
Chr03	irgsp1_rep	CDS	3100373	3100925	.	+	1	Parent=Os03t0157700-02
Chr03	irgsp1_rep	CDS	3101049	3101161	.	+	0	Parent=Os03t0157700-02
Chr03	irgsp1_rep	CDS	3101264	3101507	.	+	1	Parent=Os03t0157700-02
Chr03	irgsp1_rep	CDS	3101647	3101865	.	+	0	Parent=Os03t0157700-02
Chr03	irgsp1_rep	three_prime_UTR	3101866	3102105	.	+	.	Parent=Os03t0157700-02
Chr03	irgsp1_rep	mRNA	3103834	3109735	.	+	.	ID=Os03t0157800-01;Name=Os03t0157800-01;Locus_id=Os03g0157800;Note=Hypothetical conserved gene.;Transcript_evidence=AK070248 (DDBJ%2C Best hit);ORF_evidence=B8ANU3 (UniProt);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: 3'-5' exonuclease activity (GO:0008408);InterPro=3'-5' exonuclease (IPR002562),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J023041O06;Expression=AK070248;TENOR=Os03t0157800-01;KEGG=Os03t0157800-01 (EC:3.1.13.-)
Chr03	irgsp1_rep	five_prime_UTR	3103834	3104354	.	+	.	Parent=Os03t0157800-01
Chr03	irgsp1_rep	CDS	3104355	3104702	.	+	0	Parent=Os03t0157800-01
Chr03	irgsp1_rep	CDS	3105310	3105465	.	+	0	Parent=Os03t0157800-01
Chr03	irgsp1_rep	CDS	3106256	3106414	.	+	0	Parent=Os03t0157800-01
Chr03	irgsp1_rep	CDS	3106518	3106601	.	+	0	Parent=Os03t0157800-01
Chr03	irgsp1_rep	CDS	3106753	3106832	.	+	0	Parent=Os03t0157800-01
Chr03	irgsp1_rep	CDS	3106932	3107025	.	+	1	Parent=Os03t0157800-01
Chr03	irgsp1_rep	three_prime_UTR	3107026	3107199	.	+	.	Parent=Os03t0157800-01
Chr03	irgsp1_rep	three_prime_UTR	3107479	3107561	.	+	.	Parent=Os03t0157800-01
Chr03	irgsp1_rep	three_prime_UTR	3107699	3107744	.	+	.	Parent=Os03t0157800-01
Chr03	irgsp1_rep	three_prime_UTR	3108038	3108125	.	+	.	Parent=Os03t0157800-01
Chr03	irgsp1_rep	three_prime_UTR	3108222	3108391	.	+	.	Parent=Os03t0157800-01
Chr03	irgsp1_rep	three_prime_UTR	3108530	3108643	.	+	.	Parent=Os03t0157800-01
Chr03	irgsp1_rep	three_prime_UTR	3108710	3108817	.	+	.	Parent=Os03t0157800-01
Chr03	irgsp1_rep	three_prime_UTR	3109200	3109735	.	+	.	Parent=Os03t0157800-01
Chr03	irgsp1_rep	mRNA	3103895	3109735	.	+	.	ID=Os03t0157800-02;Name=Os03t0157800-02;Locus_id=Os03g0157800;Note=Helicase and RNase D C-terminal%2C HRDC domain containing protein.;Transcript_evidence=AK067375 (DDBJ%2C Best hit);ORF_evidence=B8ANU3 (UniProt);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Biological Process: cellular metabolic process (GO:0044237),Cellular Component: intracellular (GO:0005622),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: catalytic activity (GO:0003824),Molecular Function: 3'-5' exonuclease activity (GO:0008408);InterPro=Helicase/RNase D C-terminal%2C HRDC domain (IPR002121),3&apos%3B-5&apos%3B exonuclease (IPR002562),HRDC-like (IPR010997),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J013104L22;Expression=AK067375;TENOR=Os03t0157800-02;KEGG=Os03t0157800-02 (EC:3.1.13.-)
Chr03	irgsp1_rep	five_prime_UTR	3103895	3104354	.	+	.	Parent=Os03t0157800-02
Chr03	irgsp1_rep	CDS	3104355	3104702	.	+	0	Parent=Os03t0157800-02
Chr03	irgsp1_rep	CDS	3105310	3105465	.	+	0	Parent=Os03t0157800-02
Chr03	irgsp1_rep	CDS	3106256	3106414	.	+	0	Parent=Os03t0157800-02
Chr03	irgsp1_rep	CDS	3106518	3106601	.	+	0	Parent=Os03t0157800-02
Chr03	irgsp1_rep	CDS	3106753	3106832	.	+	0	Parent=Os03t0157800-02
Chr03	irgsp1_rep	CDS	3106932	3106982	.	+	1	Parent=Os03t0157800-02
Chr03	irgsp1_rep	CDS	3107100	3107199	.	+	1	Parent=Os03t0157800-02
Chr03	irgsp1_rep	CDS	3107479	3107561	.	+	0	Parent=Os03t0157800-02
Chr03	irgsp1_rep	CDS	3107699	3107744	.	+	1	Parent=Os03t0157800-02
Chr03	irgsp1_rep	CDS	3108038	3108125	.	+	0	Parent=Os03t0157800-02
Chr03	irgsp1_rep	CDS	3108222	3108391	.	+	2	Parent=Os03t0157800-02
Chr03	irgsp1_rep	CDS	3108530	3108643	.	+	0	Parent=Os03t0157800-02
Chr03	irgsp1_rep	CDS	3108710	3108817	.	+	0	Parent=Os03t0157800-02
Chr03	irgsp1_rep	CDS	3109200	3109415	.	+	0	Parent=Os03t0157800-02
Chr03	irgsp1_rep	three_prime_UTR	3109416	3109735	.	+	.	Parent=Os03t0157800-02
Chr03	irgsp1_rep	mRNA	3109455	3109737	.	+	.	ID=Os03t0157800-03;Name=Os03t0157800-03;Locus_id=Os03g0157800;Note=Non-protein coding transcript.;Transcript_evidence=AK058261 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-012-G06;TENOR=Os03t0157800-03
Chr03	irgsp1_rep	exon	3109455	3109737	.	+	.	Parent=Os03t0157800-03
Chr03	irgsp1_rep	mRNA	3110725	3112384	.	+	.	ID=Os03t0157900-01;Name=Os03t0157900-01;Locus_id=Os03g0157900;Note=Phosphoserine aminotransferase%2C chloroplast precursor (EC 2.6.1.52) (PSAT).;Transcript_evidence=AK120725 (DDBJ%2C Best hit),AK060677 (DDBJ%2C Best hit),AK109385 (DDBJ%2C Best hit),AK122101 (DDBJ%2C Best hit);ORF_evidence=A2XCQ4 (UniProt);GO=Biological Process: L-serine biosynthetic process (GO:0006564),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: O-phospho-L-serine:2-oxoglutarate aminotransferase activity (GO:0004648),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferase%2C class V/Cysteine desulfurase (IPR000192),Phosphoserine aminotransferase%2C subgroup (IPR003248),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424),Aminotransferase class-V pyridoxal-phosphate binding site (IPR020578),Phosphoserine aminotransferase (IPR022278);NIAS_FLcDNA=J023002L20,001-029-B10,006-211-A07,J033125K05;TENOR=Os03t0157900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	3110725	3110789	.	+	.	Parent=Os03t0157900-01
Chr03	irgsp1_rep	CDS	3110790	3112070	.	+	0	Parent=Os03t0157900-01
Chr03	irgsp1_rep	three_prime_UTR	3112071	3112384	.	+	.	Parent=Os03t0157900-01
Chr03	irgsp1_rep	mRNA	3114416	3115461	.	-	.	ID=Os03t0158000-01;Name=Os03t0158000-01;Locus_id=Os03g0158000;Note=Hypothetical protein.;Transcript_evidence=AK062544 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-104-G05;TENOR=Os03t0158000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	3115098	3115461	.	-	.	Parent=Os03t0158000-01
Chr03	irgsp1_rep	CDS	3114732	3115097	.	-	0	Parent=Os03t0158000-01
Chr03	irgsp1_rep	three_prime_UTR	3114416	3114731	.	-	.	Parent=Os03t0158000-01
Chr03	irgsp1_rep	mRNA	3115986	3120267	.	+	.	ID=Os03t0158200-01;Name=Os03t0158200-01;Locus_id=Os03g0158200;Oryzabase Gene Symbol Synonym(s)=OsRH38;Oryzabase Gene Name Synonym(s)=RNA helicase 38;Note=DEAD-like helicase%2C N-terminal domain containing protein.;Transcript_evidence=AK242248 (DDBJ%2C Best hit);ORF_evidence=B6SLS0 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=J075181G20;Oryzabase=19148;TENOR=Os03t0158200-01;KEGG=Os03t0158200-01
Chr03	irgsp1_rep	five_prime_UTR	3115986	3116090	.	+	.	Parent=Os03t0158200-01
Chr03	irgsp1_rep	CDS	3116091	3116354	.	+	0	Parent=Os03t0158200-01
Chr03	irgsp1_rep	CDS	3116467	3116760	.	+	0	Parent=Os03t0158200-01
Chr03	irgsp1_rep	CDS	3116872	3117099	.	+	0	Parent=Os03t0158200-01
Chr03	irgsp1_rep	CDS	3117950	3118015	.	+	0	Parent=Os03t0158200-01
Chr03	irgsp1_rep	CDS	3118518	3118919	.	+	0	Parent=Os03t0158200-01
Chr03	irgsp1_rep	CDS	3118990	3119101	.	+	0	Parent=Os03t0158200-01
Chr03	irgsp1_rep	CDS	3119658	3119743	.	+	2	Parent=Os03t0158200-01
Chr03	irgsp1_rep	CDS	3119820	3119885	.	+	0	Parent=Os03t0158200-01
Chr03	irgsp1_rep	three_prime_UTR	3119886	3120267	.	+	.	Parent=Os03t0158200-01
Chr03	irgsp1_rep	mRNA	3116032	3119791	.	-	.	ID=Os03t0158250-00;Name=Os03t0158250-00;Locus_id=Os03g0158250;Note=Hypothetical protein.;Transcript_evidence=tplb0037g18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0158250-00
Chr03	irgsp1_rep	five_prime_UTR	3119656	3119791	.	-	.	Parent=Os03t0158250-00
Chr03	irgsp1_rep	five_prime_UTR	3118996	3119099	.	-	.	Parent=Os03t0158250-00
Chr03	irgsp1_rep	five_prime_UTR	3118505	3118922	.	-	.	Parent=Os03t0158250-00
Chr03	irgsp1_rep	five_prime_UTR	3117948	3118008	.	-	.	Parent=Os03t0158250-00
Chr03	irgsp1_rep	five_prime_UTR	3117088	3117097	.	-	.	Parent=Os03t0158250-00
Chr03	irgsp1_rep	CDS	3116868	3117087	.	-	0	Parent=Os03t0158250-00
Chr03	irgsp1_rep	CDS	3116416	3116756	.	-	2	Parent=Os03t0158250-00
Chr03	irgsp1_rep	three_prime_UTR	3116032	3116415	.	-	.	Parent=Os03t0158250-00
Chr03	irgsp1_rep	mRNA	3120322	3123758	.	-	.	ID=Os03t0158300-01;Name=Os03t0158300-01;Locus_id=Os03g0158300;Note=Glycoside hydrolase-type carbohydrate-binding domain containing protein.;Transcript_evidence=AK066591 (DDBJ%2C Best hit);ORF_evidence=B9FBE8 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Glycoside hydrolase-type carbohydrate-binding (IPR011013),Glycoside hydrolase-type carbohydrate-binding%2C subgroup (IPR014718);NIAS_FLcDNA=J013073D03;Expression=AK066591;TENOR=Os03t0158300-01;KEGG=Os03t0158300-01
Chr03	irgsp1_rep	five_prime_UTR	3123714	3123758	.	-	.	Parent=Os03t0158300-01
Chr03	irgsp1_rep	CDS	3123276	3123713	.	-	0	Parent=Os03t0158300-01
Chr03	irgsp1_rep	CDS	3121222	3121668	.	-	0	Parent=Os03t0158300-01
Chr03	irgsp1_rep	CDS	3120538	3120732	.	-	0	Parent=Os03t0158300-01
Chr03	irgsp1_rep	three_prime_UTR	3120322	3120537	.	-	.	Parent=Os03t0158300-01
Chr03	irgsp1_rep	mRNA	3126216	3130478	.	-	.	ID=Os03t0158500-01;Name=Os03t0158500-01;Locus_id=Os03g0158500;Oryzabase Gene Name Synonym(s)=YT521-B domain protein;Note=YT521-B-like protein family protein.;Transcript_evidence=AK111578 (DDBJ%2C Best hit);ORF_evidence=Q10RI3 (UniProt);InterPro=YTH domain (IPR007275);NIAS_FLcDNA=J013075E22;Oryzabase=21062;Expression=AK111578;TENOR=Os03t0158500-01;KEGG=Os03t0158500-01
Chr03	irgsp1_rep	five_prime_UTR	3130216	3130478	.	-	.	Parent=Os03t0158500-01
Chr03	irgsp1_rep	CDS	3130101	3130215	.	-	0	Parent=Os03t0158500-01
Chr03	irgsp1_rep	CDS	3129663	3129748	.	-	2	Parent=Os03t0158500-01
Chr03	irgsp1_rep	CDS	3129421	3129538	.	-	0	Parent=Os03t0158500-01
Chr03	irgsp1_rep	CDS	3129154	3129227	.	-	2	Parent=Os03t0158500-01
Chr03	irgsp1_rep	CDS	3128258	3128797	.	-	0	Parent=Os03t0158500-01
Chr03	irgsp1_rep	CDS	3127534	3128151	.	-	0	Parent=Os03t0158500-01
Chr03	irgsp1_rep	CDS	3127235	3127447	.	-	0	Parent=Os03t0158500-01
Chr03	irgsp1_rep	CDS	3127000	3127146	.	-	0	Parent=Os03t0158500-01
Chr03	irgsp1_rep	CDS	3126690	3126902	.	-	0	Parent=Os03t0158500-01
Chr03	irgsp1_rep	three_prime_UTR	3126216	3126689	.	-	.	Parent=Os03t0158500-01
Chr03	irgsp1_rep	mRNA	3126323	3129225	.	-	.	ID=Os03t0158500-02;Name=Os03t0158500-02;Locus_id=Os03g0158500;Oryzabase Gene Name Synonym(s)=YT521-B domain protein;Note=Similar to YT521-B-like family protein%2C expressed.;Transcript_evidence=AK119641 (DDBJ%2C Best hit);ORF_evidence=Q10RI3 (UniProt);InterPro=YTH domain (IPR007275);NIAS_FLcDNA=002-130-F09;Oryzabase=21062;Expression=AK119641;TENOR=Os03t0158500-02;KEGG=Os03t0158500-02
Chr03	irgsp1_rep	CDS	3129154	3129225	.	-	0	Parent=Os03t0158500-02
Chr03	irgsp1_rep	CDS	3128258	3128797	.	-	0	Parent=Os03t0158500-02
Chr03	irgsp1_rep	CDS	3127534	3128151	.	-	0	Parent=Os03t0158500-02
Chr03	irgsp1_rep	CDS	3127235	3127447	.	-	0	Parent=Os03t0158500-02
Chr03	irgsp1_rep	CDS	3127000	3127146	.	-	0	Parent=Os03t0158500-02
Chr03	irgsp1_rep	CDS	3126690	3126902	.	-	0	Parent=Os03t0158500-02
Chr03	irgsp1_rep	three_prime_UTR	3126323	3126689	.	-	.	Parent=Os03t0158500-02
Chr03	irgsp1_rep	mRNA	3126219	3128366	.	-	.	ID=Os03t0158500-03;Name=Os03t0158500-03;Locus_id=Os03g0158500;Oryzabase Gene Name Synonym(s)=YT521-B domain protein;Note=Similar to YT521-B-like family protein%2C expressed.;Transcript_evidence=AK062076 (DDBJ%2C Best hit);ORF_evidence=Q10RI3 (UniProt);InterPro=YTH domain (IPR007275);NIAS_FLcDNA=001-044-F04;Oryzabase=21062;Expression=AK062076;TENOR=Os03t0158500-03;KEGG=Os03t0158500-03
Chr03	irgsp1_rep	five_prime_UTR	3128366	3128366	.	-	.	Parent=Os03t0158500-03
Chr03	irgsp1_rep	CDS	3128258	3128365	.	-	0	Parent=Os03t0158500-03
Chr03	irgsp1_rep	CDS	3127534	3128151	.	-	0	Parent=Os03t0158500-03
Chr03	irgsp1_rep	CDS	3127235	3127447	.	-	0	Parent=Os03t0158500-03
Chr03	irgsp1_rep	CDS	3127000	3127146	.	-	0	Parent=Os03t0158500-03
Chr03	irgsp1_rep	CDS	3126690	3126902	.	-	0	Parent=Os03t0158500-03
Chr03	irgsp1_rep	three_prime_UTR	3126219	3126689	.	-	.	Parent=Os03t0158500-03
Chr03	irgsp1_rep	mRNA	3126385	3127924	.	-	.	ID=Os03t0158500-04;Name=Os03t0158500-04;Locus_id=Os03g0158500;Oryzabase Gene Name Synonym(s)=YT521-B domain protein;Note=Similar to YT521-B-like family protein%2C expressed.;Transcript_evidence=AK103405 (DDBJ%2C Best hit);ORF_evidence=Q10RI3 (UniProt);InterPro=YTH domain (IPR007275);NIAS_FLcDNA=J033128D05;Oryzabase=21062;Expression=AK103405;TENOR=Os03t0158500-04;KEGG=Os03t0158500-04
Chr03	irgsp1_rep	five_prime_UTR	3127924	3127924	.	-	.	Parent=Os03t0158500-04
Chr03	irgsp1_rep	CDS	3127534	3127923	.	-	0	Parent=Os03t0158500-04
Chr03	irgsp1_rep	CDS	3127235	3127447	.	-	0	Parent=Os03t0158500-04
Chr03	irgsp1_rep	CDS	3127000	3127146	.	-	0	Parent=Os03t0158500-04
Chr03	irgsp1_rep	CDS	3126690	3126902	.	-	0	Parent=Os03t0158500-04
Chr03	irgsp1_rep	three_prime_UTR	3126385	3126689	.	-	.	Parent=Os03t0158500-04
Chr03	irgsp1_rep	mRNA	3126417	3127680	.	+	.	ID=Os03t0158550-00;Name=Os03t0158550-00;Locus_id=Os03g0158550;Note=Hypothetical gene.;Transcript_evidence=BT016473 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0158550-00;KEGG=Os03t0158550-00
Chr03	irgsp1_rep	five_prime_UTR	3126417	3126893	.	+	.	Parent=Os03t0158550-00
Chr03	irgsp1_rep	five_prime_UTR	3126988	3127140	.	+	.	Parent=Os03t0158550-00
Chr03	irgsp1_rep	five_prime_UTR	3127231	3127286	.	+	.	Parent=Os03t0158550-00
Chr03	irgsp1_rep	CDS	3127287	3127452	.	+	0	Parent=Os03t0158550-00
Chr03	irgsp1_rep	CDS	3127538	3127674	.	+	2	Parent=Os03t0158550-00
Chr03	irgsp1_rep	three_prime_UTR	3127675	3127680	.	+	.	Parent=Os03t0158550-00
Chr03	irgsp1_rep	mRNA	3132124	3132741	.	+	.	ID=Os03t0158600-00;Name=Os03t0158600-00;Locus_id=Os03g0158600;Note=Hypothetical conserved gene.;Transcript_evidence=BT064868 (DDBJ);ORF_evidence=NP_001049023.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Ribonuclease H-like (IPR012337);TENOR=Os03t0158600-00;KEGG=Os03t0158600-00
Chr03	irgsp1_rep	CDS	3132124	3132741	.	+	0	Parent=Os03t0158600-00
Chr03	irgsp1_rep	mRNA	3151603	3165238	.	-	.	ID=Os03t0158700-01;Name=Os03t0158700-01;Locus_id=Os03g0158700;Oryzabase Gene Symbol Synonym(s)=OsSub27%2C SUB27;Oryzabase Gene Name Synonym(s)=Subtilisin 27%2C SUBTILISIN 27;Note=Similar to PA domain containing protein%2C expressed.;Transcript_evidence=AK288251 (DDBJ%2C Best hit);ORF_evidence=Q8H8B6 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);NIAS_FLcDNA=J090015E09;Oryzabase=20114;TENOR=Os03t0158700-01;KEGG=Os03t0158700-01
Chr03	irgsp1_rep	five_prime_UTR	3164971	3165238	.	-	.	Parent=Os03t0158700-01
Chr03	irgsp1_rep	five_prime_UTR	3161788	3162470	.	-	.	Parent=Os03t0158700-01
Chr03	irgsp1_rep	CDS	3161776	3161787	.	-	0	Parent=Os03t0158700-01
Chr03	irgsp1_rep	CDS	3161601	3161663	.	-	0	Parent=Os03t0158700-01
Chr03	irgsp1_rep	CDS	3160123	3160214	.	-	0	Parent=Os03t0158700-01
Chr03	irgsp1_rep	CDS	3159734	3159831	.	-	1	Parent=Os03t0158700-01
Chr03	irgsp1_rep	CDS	3159464	3159625	.	-	2	Parent=Os03t0158700-01
Chr03	irgsp1_rep	CDS	3155397	3156070	.	-	2	Parent=Os03t0158700-01
Chr03	irgsp1_rep	CDS	3154554	3154621	.	-	0	Parent=Os03t0158700-01
Chr03	irgsp1_rep	CDS	3153344	3153707	.	-	1	Parent=Os03t0158700-01
Chr03	irgsp1_rep	CDS	3151781	3152653	.	-	0	Parent=Os03t0158700-01
Chr03	irgsp1_rep	three_prime_UTR	3151603	3151780	.	-	.	Parent=Os03t0158700-01
Chr03	irgsp1_rep	mRNA	3151514	3152661	.	-	.	ID=Os03t0158700-02;Name=Os03t0158700-02;Locus_id=Os03g0158700;Oryzabase Gene Symbol Synonym(s)=OsSub27%2C SUB27;Oryzabase Gene Name Synonym(s)=Subtilisin 27%2C SUBTILISIN 27;Note=Similar to P69C protein.;Transcript_evidence=AK071242 (DDBJ%2C Best hit);ORF_evidence=Q8H8B6 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);NIAS_FLcDNA=J023084K04;Oryzabase=20114;Expression=AK071242;TENOR=Os03t0158700-02;KEGG=Os03t0158700-02
Chr03	irgsp1_rep	five_prime_UTR	3152660	3152661	.	-	.	Parent=Os03t0158700-02
Chr03	irgsp1_rep	CDS	3151781	3152659	.	-	0	Parent=Os03t0158700-02
Chr03	irgsp1_rep	three_prime_UTR	3151514	3151780	.	-	.	Parent=Os03t0158700-02
Chr03	irgsp1_rep	mRNA	3151773	3152850	.	+	.	ID=Os03t0158800-01;Name=Os03t0158800-01;Locus_id=Os03g0158800;Note=Similar to P69C protein.;Transcript_evidence=AK108516 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-144-A10;Expression=AK108516;TENOR=Os03t0158800-01;KEGG=Os03t0158800-01
Chr03	irgsp1_rep	five_prime_UTR	3151773	3152432	.	+	.	Parent=Os03t0158800-01
Chr03	irgsp1_rep	CDS	3152433	3152723	.	+	0	Parent=Os03t0158800-01
Chr03	irgsp1_rep	three_prime_UTR	3152724	3152850	.	+	.	Parent=Os03t0158800-01
Chr03	irgsp1_rep	mRNA	3156837	3158309	.	+	.	ID=Os03t0158900-00;Name=Os03t0158900-00;Locus_id=Os03g0158900;Note=Similar to Pentatricopeptide (PPR) repeat-containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B3VTB1 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);TENOR=Os03t0158900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	3156837	3158309	.	+	0	Parent=Os03t0158900-00
Chr03	irgsp1_rep	mRNA	3165801	3168806	.	+	.	ID=Os03t0159100-01;Name=Os03t0159100-01;Locus_id=Os03g0159100;CGSNL Gene Symbol=RLCK101;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 101;Oryzabase Gene Symbol Synonym(s)=OsRLCK101%2C PTK3%2C OsPTK3;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 101%2C Protein Tyrosine Kinase 3;Note=Similar to Protein kinase APK1B%2C chloroplast precursor (EC 2.7.1.-).;Transcript_evidence=AK065635 (DDBJ%2C Best hit);ORF_evidence=C6ZRP4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013030N19;Oryzabase=18810;Expression=AK065635;TENOR=Os03t0159100-01;KEGG=Os03t0159100-01
Chr03	irgsp1_rep	five_prime_UTR	3165801	3165969	.	+	.	Parent=Os03t0159100-01
Chr03	irgsp1_rep	CDS	3165970	3166036	.	+	0	Parent=Os03t0159100-01
Chr03	irgsp1_rep	CDS	3166484	3166800	.	+	2	Parent=Os03t0159100-01
Chr03	irgsp1_rep	CDS	3166928	3167063	.	+	0	Parent=Os03t0159100-01
Chr03	irgsp1_rep	CDS	3167443	3167579	.	+	2	Parent=Os03t0159100-01
Chr03	irgsp1_rep	CDS	3167877	3168000	.	+	0	Parent=Os03t0159100-01
Chr03	irgsp1_rep	CDS	3168258	3168607	.	+	2	Parent=Os03t0159100-01
Chr03	irgsp1_rep	three_prime_UTR	3168608	3168806	.	+	.	Parent=Os03t0159100-01
Chr03	irgsp1_rep	mRNA	3170081	3176302	.	-	.	ID=Os03t0159150-00;Name=Os03t0159150-00;Locus_id=Os03g0159150;Note=Hypothetical protein.;Transcript_evidence=tplb0061e10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0159150-00
Chr03	irgsp1_rep	five_prime_UTR	3174266	3176302	.	-	.	Parent=Os03t0159150-00
Chr03	irgsp1_rep	five_prime_UTR	3170755	3170870	.	-	.	Parent=Os03t0159150-00
Chr03	irgsp1_rep	CDS	3170081	3170754	.	-	0	Parent=Os03t0159150-00
Chr03	irgsp1_rep	mRNA	3170103	3176292	.	+	.	ID=Os03t0159200-01;Name=Os03t0159200-01;Locus_id=Os03g0159200;Note=Region of unknown function XS domain containing protein.;Transcript_evidence=AK060572 (DDBJ%2C Best hit);ORF_evidence=Q8H8B2 (UniProt);InterPro=XS domain (IPR005380);NIAS_FLcDNA=001-023-C08;Expression=AK060572;TENOR=Os03t0159200-01;KEGG=Os03t0159200-01
Chr03	irgsp1_rep	five_prime_UTR	3170103	3170136	.	+	.	Parent=Os03t0159200-01
Chr03	irgsp1_rep	CDS	3170137	3170879	.	+	0	Parent=Os03t0159200-01
Chr03	irgsp1_rep	CDS	3174274	3174581	.	+	1	Parent=Os03t0159200-01
Chr03	irgsp1_rep	CDS	3175807	3176159	.	+	2	Parent=Os03t0159200-01
Chr03	irgsp1_rep	three_prime_UTR	3176160	3176292	.	+	.	Parent=Os03t0159200-01
Chr03	irgsp1_rep	mRNA	3178572	3179590	.	-	.	ID=Os03t0159400-01;Name=Os03t0159400-01;Locus_id=Os03g0159400;Oryzabase Gene Symbol Synonym(s)=OsOFP7%2C OsOFP11;Oryzabase Gene Name Synonym(s)=OVATE family protein 7%2C ovate family protein 11%2C OVATE-domain containing protein 11;Note=Protein of unknown function DUF623%2C plant domain containing protein.;Transcript_evidence=AK108557 (DDBJ%2C Best hit);ORF_evidence=Q8H8B1 (UniProt);InterPro=Domain of unknown function DUF623 (IPR006458);NIAS_FLcDNA=002-144-E12;Oryzabase=18303;Expression=AK108557;TENOR=Os03t0159400-01;KEGG=Os03t0159400-01
Chr03	irgsp1_rep	five_prime_UTR	3179480	3179590	.	-	.	Parent=Os03t0159400-01
Chr03	irgsp1_rep	CDS	3178835	3179479	.	-	0	Parent=Os03t0159400-01
Chr03	irgsp1_rep	three_prime_UTR	3178572	3178834	.	-	.	Parent=Os03t0159400-01
Chr03	irgsp1_rep	mRNA	3184496	3185936	.	-	.	ID=Os03t0159600-01;Name=Os03t0159600-01;Locus_id=Os03g0159600;CGSNL Gene Symbol=LEA30;CGSNL Gene Name=LATE EMBRYOGENESIS ABUNDANT PROTEIN 30;Oryzabase Gene Symbol Synonym(s)=OsLEA30%2C OsEnS-43;Oryzabase Gene Name Synonym(s)=late embryogenesis abundant protein 30%2C endosperm-specific gene 43;Note=Similar to Rab28 protein.;Transcript_evidence=AK106743 (DDBJ%2C Best hit);ORF_evidence=Q41850 (UniProt);InterPro=Seed maturation protein (IPR007011);NIAS_FLcDNA=002-115-B06;Oryzabase=10189;Expression=AK106743;TENOR=Os03t0159600-01;KEGG=Os03t0159600-01
Chr03	irgsp1_rep	five_prime_UTR	3185866	3185936	.	-	.	Parent=Os03t0159600-01
Chr03	irgsp1_rep	CDS	3185518	3185865	.	-	0	Parent=Os03t0159600-01
Chr03	irgsp1_rep	CDS	3185114	3185431	.	-	0	Parent=Os03t0159600-01
Chr03	irgsp1_rep	CDS	3184864	3185028	.	-	0	Parent=Os03t0159600-01
Chr03	irgsp1_rep	three_prime_UTR	3184496	3184863	.	-	.	Parent=Os03t0159600-01
Chr03	irgsp1_rep	mRNA	3186782	3189325	.	+	.	ID=Os03t0159700-01;Name=Os03t0159700-01;Locus_id=Os03g0159700;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK063559 (DDBJ%2C Best hit);ORF_evidence=A2XCR8 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=001-117-F01;Expression=AK063559;TENOR=Os03t0159700-01;KEGG=Os03t0159700-01
Chr03	irgsp1_rep	five_prime_UTR	3186782	3186805	.	+	.	Parent=Os03t0159700-01
Chr03	irgsp1_rep	CDS	3186806	3187042	.	+	0	Parent=Os03t0159700-01
Chr03	irgsp1_rep	CDS	3187430	3188422	.	+	0	Parent=Os03t0159700-01
Chr03	irgsp1_rep	three_prime_UTR	3188423	3188491	.	+	.	Parent=Os03t0159700-01
Chr03	irgsp1_rep	three_prime_UTR	3189086	3189325	.	+	.	Parent=Os03t0159700-01
Chr03	irgsp1_rep	mRNA	3192052	3194414	.	+	.	ID=Os03t0159800-01;Name=Os03t0159800-01;Locus_id=Os03g0159800;Note=Complex 1 LYR protein family protein.;Transcript_evidence=AK072198 (DDBJ%2C Best hit);ORF_evidence=NP_001047678.1 (RefSeq);InterPro=Complex 1 LYR protein (IPR008011);NIAS_FLcDNA=J013158C01;Expression=AK072198;TENOR=Os03t0159800-01;KEGG=Os03t0159800-01
Chr03	irgsp1_rep	five_prime_UTR	3192052	3192243	.	+	.	Parent=Os03t0159800-01
Chr03	irgsp1_rep	five_prime_UTR	3193184	3193228	.	+	.	Parent=Os03t0159800-01
Chr03	irgsp1_rep	five_prime_UTR	3193338	3193400	.	+	.	Parent=Os03t0159800-01
Chr03	irgsp1_rep	CDS	3193401	3193506	.	+	0	Parent=Os03t0159800-01
Chr03	irgsp1_rep	CDS	3193603	3193745	.	+	2	Parent=Os03t0159800-01
Chr03	irgsp1_rep	three_prime_UTR	3193746	3194414	.	+	.	Parent=Os03t0159800-01
Chr03	irgsp1_rep	mRNA	3192106	3195531	.	+	.	ID=Os03t0159800-02;Name=Os03t0159800-02;Locus_id=Os03g0159800;Note=Similar to predicted protein.;Transcript_evidence=AK067149 (DDBJ%2C Best hit);ORF_evidence=NP_001047678.1 (RefSeq);NIAS_FLcDNA=J013097G10;Expression=AK067149;TENOR=Os03t0159800-02;KEGG=Os03t0159800-02
Chr03	irgsp1_rep	five_prime_UTR	3192106	3192243	.	+	.	Parent=Os03t0159800-02
Chr03	irgsp1_rep	five_prime_UTR	3192412	3192449	.	+	.	Parent=Os03t0159800-02
Chr03	irgsp1_rep	five_prime_UTR	3193184	3193577	.	+	.	Parent=Os03t0159800-02
Chr03	irgsp1_rep	CDS	3193578	3193745	.	+	0	Parent=Os03t0159800-02
Chr03	irgsp1_rep	three_prime_UTR	3193746	3195531	.	+	.	Parent=Os03t0159800-02
Chr03	irgsp1_rep	mRNA	3195766	3196656	.	-	.	ID=Os03t0159900-01;Name=Os03t0159900-01;Locus_id=Os03g0159900;Note=Hypothetical conserved gene.;Transcript_evidence=AK120519 (DDBJ%2C Best hit);ORF_evidence=Q10RG6 (UniProt);NIAS_FLcDNA=J013124C22;Expression=AK120519;TENOR=Os03t0159900-01;KEGG=Os03t0159900-01
Chr03	irgsp1_rep	five_prime_UTR	3196569	3196656	.	-	.	Parent=Os03t0159900-01
Chr03	irgsp1_rep	CDS	3196080	3196568	.	-	0	Parent=Os03t0159900-01
Chr03	irgsp1_rep	three_prime_UTR	3195766	3196079	.	-	.	Parent=Os03t0159900-01
Chr03	irgsp1_rep	mRNA	3195772	3196616	.	-	.	ID=Os03t0159900-02;Name=Os03t0159900-02;Locus_id=Os03g0159900;Note=Hypothetical conserved gene.;Transcript_evidence=AK099400 (DDBJ%2C Best hit);ORF_evidence=A2XCR9 (UniProt);NIAS_FLcDNA=J013001B14;Expression=AK099400;TENOR=Os03t0159900-02;KEGG=Os03t0159900-02
Chr03	irgsp1_rep	five_prime_UTR	3196569	3196616	.	-	.	Parent=Os03t0159900-02
Chr03	irgsp1_rep	CDS	3196080	3196568	.	-	0	Parent=Os03t0159900-02
Chr03	irgsp1_rep	three_prime_UTR	3195772	3196079	.	-	.	Parent=Os03t0159900-02
Chr03	irgsp1_rep	mRNA	3197694	3199982	.	+	.	ID=Os03t0160000-01;Name=Os03t0160000-01;Locus_id=Os03g0160000;Note=Conserved hypothetical protein.;Transcript_evidence=AK068259 (DDBJ%2C Best hit);ORF_evidence=B9FBF7 (UniProt);NIAS_FLcDNA=J013149O16;TENOR=Os03t0160000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	3197694	3199192	.	+	.	Parent=Os03t0160000-01
Chr03	irgsp1_rep	CDS	3199193	3199387	.	+	0	Parent=Os03t0160000-01
Chr03	irgsp1_rep	three_prime_UTR	3199388	3199982	.	+	.	Parent=Os03t0160000-01
Chr03	irgsp1_rep	mRNA	3201345	3208276	.	+	.	ID=Os03t0160100-01;Name=Os03t0160100-01;Locus_id=Os03g0160100;RAP-DB Gene Symbol Synonym(s)=ACDR1%2C SPL3%2C OsEDR1%2C OsACDR1%2C EDR1;RAP-DB Gene Name Synonym(s)=ACCELERATED CELL DEATH AND RESISTANCE 1%2C SPOTTED LEAF 3%2C Oryza sativa accelerated cell death and resistance 1%2C accelerated cell death and resistance 1%2C enhanced disease resistance 1%2C EDR1 ortholog;CGSNL Gene Symbol=ACDR1;CGSNL Gene Name=ACCELERATED CELL DEATH AND RESISTANCE 1;Oryzabase Gene Symbol Synonym(s)=OsEDR1%2C OsACDR1%2C EDR1;Oryzabase Gene Name Synonym(s)=Oryza sativa accelerated cell death and resistance 1%2C accelerated cell death and resistance 1%2C enhanced disease resistance 1%2C EDR1 ortholog;Note=Mitogen-activated protein kinase kinase kinase (MAPKKK)%2C Disease resistance%2C Defense/stress response;Transcript_evidence=NM_001055570.1,AY167575;ORF_evidence=Q10RG4;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine/threonine/dual specificity protein kinase%2C catalytic  domain (IPR002290),Serine-threonine/tyrosine-protein kinase catalytic domain (IPR001245),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J013091G05;Manual Curation=November 13%2C 2015;Literature_PMID=26276867,19904499,12559953;Oryzabase=10228;Expression=AK111595;TENOR=Os03t0160100-01;KEGG=Os03t0160100-01
Chr03	irgsp1_rep	five_prime_UTR	3201345	3201504	.	+	.	Parent=Os03t0160100-01
Chr03	irgsp1_rep	CDS	3201505	3201948	.	+	0	Parent=Os03t0160100-01
Chr03	irgsp1_rep	CDS	3202760	3203182	.	+	0	Parent=Os03t0160100-01
Chr03	irgsp1_rep	CDS	3203648	3203748	.	+	0	Parent=Os03t0160100-01
Chr03	irgsp1_rep	CDS	3204391	3205652	.	+	1	Parent=Os03t0160100-01
Chr03	irgsp1_rep	CDS	3205838	3205878	.	+	2	Parent=Os03t0160100-01
Chr03	irgsp1_rep	CDS	3205990	3206058	.	+	0	Parent=Os03t0160100-01
Chr03	irgsp1_rep	CDS	3206188	3206288	.	+	0	Parent=Os03t0160100-01
Chr03	irgsp1_rep	CDS	3206626	3206704	.	+	1	Parent=Os03t0160100-01
Chr03	irgsp1_rep	CDS	3206783	3206881	.	+	0	Parent=Os03t0160100-01
Chr03	irgsp1_rep	CDS	3206970	3207038	.	+	0	Parent=Os03t0160100-01
Chr03	irgsp1_rep	CDS	3207131	3207180	.	+	0	Parent=Os03t0160100-01
Chr03	irgsp1_rep	CDS	3207424	3207600	.	+	1	Parent=Os03t0160100-01
Chr03	irgsp1_rep	CDS	3207709	3207847	.	+	1	Parent=Os03t0160100-01
Chr03	irgsp1_rep	three_prime_UTR	3207848	3208276	.	+	.	Parent=Os03t0160100-01
Chr03	irgsp1_rep	mRNA	3208862	3210711	.	+	.	ID=Os03t0160200-01;Name=Os03t0160200-01;Locus_id=Os03g0160200;Note=Conserved hypothetical protein.;Transcript_evidence=AK071081 (DDBJ%2C Best hit);ORF_evidence=A2XCS2 (UniProt);NIAS_FLcDNA=J023076I11;Expression=AK071081;TENOR=Os03t0160200-01;KEGG=Os03t0160200-01
Chr03	irgsp1_rep	five_prime_UTR	3208862	3209129	.	+	.	Parent=Os03t0160200-01
Chr03	irgsp1_rep	five_prime_UTR	3209221	3209349	.	+	.	Parent=Os03t0160200-01
Chr03	irgsp1_rep	five_prime_UTR	3209509	3209604	.	+	.	Parent=Os03t0160200-01
Chr03	irgsp1_rep	CDS	3209605	3210165	.	+	0	Parent=Os03t0160200-01
Chr03	irgsp1_rep	three_prime_UTR	3210166	3210711	.	+	.	Parent=Os03t0160200-01
Chr03	irgsp1_rep	mRNA	3208899	3211539	.	+	.	ID=Os03t0160200-02;Name=Os03t0160200-02;Locus_id=Os03g0160200;Note=Conserved hypothetical protein.;Transcript_evidence=AK064836 (DDBJ%2C Best hit),AK100712 (DDBJ%2C Best hit),AK104859 (DDBJ%2C Best hit);ORF_evidence=A2XCS2 (UniProt);NIAS_FLcDNA=J013000F21,J023115H15,001-043-D09;TENOR=Os03t0160200-02
Chr03	irgsp1_rep	five_prime_UTR	3208899	3209129	.	+	.	Parent=Os03t0160200-02
Chr03	irgsp1_rep	five_prime_UTR	3209221	3209349	.	+	.	Parent=Os03t0160200-02
Chr03	irgsp1_rep	five_prime_UTR	3209509	3209604	.	+	.	Parent=Os03t0160200-02
Chr03	irgsp1_rep	CDS	3209605	3210165	.	+	0	Parent=Os03t0160200-02
Chr03	irgsp1_rep	three_prime_UTR	3210166	3211093	.	+	.	Parent=Os03t0160200-02
Chr03	irgsp1_rep	three_prime_UTR	3211180	3211539	.	+	.	Parent=Os03t0160200-02
Chr03	irgsp1_rep	mRNA	3212791	3213075	.	-	.	ID=Os03t0160300-00;Name=Os03t0160300-00;Locus_id=Os03g0160300;Note=Protein of unknown function DUF1677%2C plant family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001173277.1 (RefSeq);InterPro=Protein of unknown function DUF1677%2C plant (IPR012876);TENOR=Os03t0160300-00;KEGG=Os03t0160300-00
Chr03	irgsp1_rep	CDS	3212791	3213075	.	-	0	Parent=Os03t0160300-00
Chr03	irgsp1_rep	mRNA	3215854	3220186	.	-	.	ID=Os03t0160400-01;Name=Os03t0160400-01;Locus_id=Os03g0160400;Note=Similar to ACL098Cp.;Transcript_evidence=AK068372 (DDBJ%2C Best hit);ORF_evidence=NP_172037.1 (RefSeq);NIAS_FLcDNA=J013151B11;Expression=AK068372;TENOR=Os03t0160400-01;KEGG=Os03t0160400-01
Chr03	irgsp1_rep	five_prime_UTR	3219743	3220186	.	-	.	Parent=Os03t0160400-01
Chr03	irgsp1_rep	five_prime_UTR	3219347	3219354	.	-	.	Parent=Os03t0160400-01
Chr03	irgsp1_rep	CDS	3218564	3219346	.	-	0	Parent=Os03t0160400-01
Chr03	irgsp1_rep	CDS	3218329	3218490	.	-	0	Parent=Os03t0160400-01
Chr03	irgsp1_rep	CDS	3216763	3218214	.	-	0	Parent=Os03t0160400-01
Chr03	irgsp1_rep	CDS	3216169	3216651	.	-	0	Parent=Os03t0160400-01
Chr03	irgsp1_rep	three_prime_UTR	3215854	3216168	.	-	.	Parent=Os03t0160400-01
Chr03	irgsp1_rep	mRNA	3216178	3216835	.	+	.	ID=Os03t0160502-00;Name=Os03t0160502-00;Locus_id=Os03g0160502;Note=Non-protein coding transcript.;Transcript_evidence=EU944825 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0160502-00
Chr03	irgsp1_rep	exon	3216178	3216397	.	+	.	Parent=Os03t0160502-00
Chr03	irgsp1_rep	exon	3216485	3216835	.	+	.	Parent=Os03t0160502-00
Chr03	irgsp1_rep	mRNA	3229040	3233510	.	-	.	ID=Os03t0160600-01;Name=Os03t0160600-01;Locus_id=Os03g0160600;Note=Similar to type I inositol-1%2C4%2C5-trisphosphate 5-phosphatase CVP2.;Transcript_evidence=AK241821 (DDBJ%2C Best hit);ORF_evidence=NP_001151627.1 (RefSeq);GO=Molecular Function: inositol or phosphatidylinositol phosphatase activity (GO:0004437);InterPro=Inositol polyphosphate-related phosphatase (IPR000300),Endonuclease/exonuclease/phosphatase (IPR005135);NIAS_FLcDNA=J065212G04;TENOR=Os03t0160600-01;KEGG=Os03t0160600-01 (EC:3.1.3.36)
Chr03	irgsp1_rep	five_prime_UTR	3232941	3233510	.	-	.	Parent=Os03t0160600-01
Chr03	irgsp1_rep	CDS	3232905	3232940	.	-	0	Parent=Os03t0160600-01
Chr03	irgsp1_rep	CDS	3232700	3232796	.	-	0	Parent=Os03t0160600-01
Chr03	irgsp1_rep	CDS	3232408	3232479	.	-	2	Parent=Os03t0160600-01
Chr03	irgsp1_rep	CDS	3232221	3232308	.	-	2	Parent=Os03t0160600-01
Chr03	irgsp1_rep	CDS	3232032	3232136	.	-	1	Parent=Os03t0160600-01
Chr03	irgsp1_rep	CDS	3231429	3231929	.	-	1	Parent=Os03t0160600-01
Chr03	irgsp1_rep	CDS	3231180	3231315	.	-	1	Parent=Os03t0160600-01
Chr03	irgsp1_rep	CDS	3230863	3231053	.	-	0	Parent=Os03t0160600-01
Chr03	irgsp1_rep	CDS	3230656	3230764	.	-	1	Parent=Os03t0160600-01
Chr03	irgsp1_rep	CDS	3230229	3230377	.	-	0	Parent=Os03t0160600-01
Chr03	irgsp1_rep	CDS	3229900	3230146	.	-	1	Parent=Os03t0160600-01
Chr03	irgsp1_rep	three_prime_UTR	3229837	3229899	.	-	.	Parent=Os03t0160600-01
Chr03	irgsp1_rep	three_prime_UTR	3229615	3229755	.	-	.	Parent=Os03t0160600-01
Chr03	irgsp1_rep	three_prime_UTR	3229040	3229514	.	-	.	Parent=Os03t0160600-01
Chr03	irgsp1_rep	mRNA	3241745	3242616	.	-	.	ID=Os03t0160900-01;Name=Os03t0160900-01;Locus_id=Os03g0160900;Note=Conserved hypothetical protein.;Transcript_evidence=AK242286 (DDBJ%2C Best hit);ORF_evidence=Q10RF8 (UniProt);NIAS_FLcDNA=J075189L19;TENOR=Os03t0160900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	3241897	3242616	.	-	0	Parent=Os03t0160900-01
Chr03	irgsp1_rep	three_prime_UTR	3241745	3241896	.	-	.	Parent=Os03t0160900-01
Chr03	irgsp1_rep	mRNA	3252987	3257807	.	+	.	ID=Os03t0161000-01;Name=Os03t0161000-01;Locus_id=Os03g0161000;Note=Conserved hypothetical protein.;Transcript_evidence=AK120446 (DDBJ%2C Best hit);ORF_evidence=B8ANV6 (UniProt);NIAS_FLcDNA=J013099P14;Expression=AK120446;TENOR=Os03t0161000-01;KEGG=Os03t0161000-01
Chr03	irgsp1_rep	five_prime_UTR	3252987	3253599	.	+	.	Parent=Os03t0161000-01
Chr03	irgsp1_rep	CDS	3253600	3253701	.	+	0	Parent=Os03t0161000-01
Chr03	irgsp1_rep	CDS	3253787	3253881	.	+	0	Parent=Os03t0161000-01
Chr03	irgsp1_rep	CDS	3254327	3254489	.	+	1	Parent=Os03t0161000-01
Chr03	irgsp1_rep	three_prime_UTR	3254490	3257118	.	+	.	Parent=Os03t0161000-01
Chr03	irgsp1_rep	three_prime_UTR	3257212	3257807	.	+	.	Parent=Os03t0161000-01
Chr03	irgsp1_rep	mRNA	3253637	3257778	.	+	.	ID=Os03t0161000-02;Name=Os03t0161000-02;Locus_id=Os03g0161000;Note=Hypothetical conserved gene.;Transcript_evidence=AK121425 (DDBJ%2C Best hit);ORF_evidence=B8ANV6 (UniProt);NIAS_FLcDNA=J023135K12;Expression=AK121425;TENOR=Os03t0161000-02;KEGG=Os03t0161000-02
Chr03	irgsp1_rep	CDS	3253637	3253701	.	+	0	Parent=Os03t0161000-02
Chr03	irgsp1_rep	CDS	3253787	3253881	.	+	1	Parent=Os03t0161000-02
Chr03	irgsp1_rep	CDS	3254327	3254613	.	+	2	Parent=Os03t0161000-02
Chr03	irgsp1_rep	three_prime_UTR	3254614	3257118	.	+	.	Parent=Os03t0161000-02
Chr03	irgsp1_rep	three_prime_UTR	3257212	3257778	.	+	.	Parent=Os03t0161000-02
Chr03	irgsp1_rep	mRNA	3260107	3270386	.	+	.	ID=Os03t0161100-00;Name=Os03t0161100-00;Locus_id=Os03g0161100;Note=Similar to Viral A-type inclusion protein repeat containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10RF6 (UniProt);InterPro=Prefoldin (IPR009053),KIP1-like (IPR011684);TENOR=Os03t0161100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	3260107	3260127	.	+	0	Parent=Os03t0161100-00
Chr03	irgsp1_rep	CDS	3260707	3261049	.	+	0	Parent=Os03t0161100-00
Chr03	irgsp1_rep	CDS	3262351	3266753	.	+	2	Parent=Os03t0161100-00
Chr03	irgsp1_rep	CDS	3267141	3269105	.	+	0	Parent=Os03t0161100-00
Chr03	irgsp1_rep	CDS	3269268	3270386	.	+	0	Parent=Os03t0161100-00
Chr03	irgsp1_rep	mRNA	3269319	3270225	.	-	.	ID=Os03t0161150-00;Name=Os03t0161150-00;Locus_id=Os03g0161150;Note=Non-protein coding transcript.;Transcript_evidence=AK360519 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0161150-00
Chr03	irgsp1_rep	exon	3270078	3270225	.	-	.	Parent=Os03t0161150-00
Chr03	irgsp1_rep	exon	3269769	3270002	.	-	.	Parent=Os03t0161150-00
Chr03	irgsp1_rep	exon	3269319	3269679	.	-	.	Parent=Os03t0161150-00
Chr03	irgsp1_rep	mRNA	3271150	3276878	.	-	.	ID=Os03t0161200-01;Name=Os03t0161200-01;Locus_id=Os03g0161200;CGSNL Gene Symbol=SULTR3%3B2;CGSNL Gene Name=SULPHATE TRANSPORTER 3%3B2;Oryzabase Gene Symbol Synonym(s)=OsSultr3%3B2%2C OsSul3%3B2;Oryzabase Gene Name Synonym(s)=sulphate transporter 3%3B2;Note=Similar to Sulphate transporter.;Transcript_evidence=AK066932 (DDBJ%2C Best hit);ORF_evidence=C7C5T9 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: sulfate transport (GO:0008272),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: secondary active sulfate transmembrane transporter activity (GO:0008271);InterPro=Sulphate anion transporter (IPR001902),Sulphate transporter/antisigma-factor antagonist STAS (IPR002645),Sulphate transporter (IPR011547),Sulphate anion transporter%2C conserved site (IPR018045);NIAS_FLcDNA=J013093F02;Oryzabase=9321;TENOR=Os03t0161200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	3276824	3276878	.	-	.	Parent=Os03t0161200-01
Chr03	irgsp1_rep	CDS	3276430	3276823	.	-	0	Parent=Os03t0161200-01
Chr03	irgsp1_rep	CDS	3275951	3276330	.	-	2	Parent=Os03t0161200-01
Chr03	irgsp1_rep	CDS	3274863	3274928	.	-	0	Parent=Os03t0161200-01
Chr03	irgsp1_rep	CDS	3273066	3273179	.	-	0	Parent=Os03t0161200-01
Chr03	irgsp1_rep	CDS	3272837	3272953	.	-	0	Parent=Os03t0161200-01
Chr03	irgsp1_rep	CDS	3272606	3272732	.	-	0	Parent=Os03t0161200-01
Chr03	irgsp1_rep	CDS	3272057	3272534	.	-	2	Parent=Os03t0161200-01
Chr03	irgsp1_rep	CDS	3271867	3271952	.	-	1	Parent=Os03t0161200-01
Chr03	irgsp1_rep	CDS	3271693	3271769	.	-	2	Parent=Os03t0161200-01
Chr03	irgsp1_rep	CDS	3271392	3271580	.	-	0	Parent=Os03t0161200-01
Chr03	irgsp1_rep	three_prime_UTR	3271150	3271391	.	-	.	Parent=Os03t0161200-01
Chr03	irgsp1_rep	mRNA	3271246	3276760	.	+	.	ID=Os03t0161302-00;Name=Os03t0161302-00;Locus_id=Os03g0161302;Note=Hypothetical protein.;Transcript_evidence=tplb0050b20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0161302-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	3271246	3271565	.	+	.	Parent=Os03t0161302-00
Chr03	irgsp1_rep	five_prime_UTR	3271682	3271752	.	+	.	Parent=Os03t0161302-00
Chr03	irgsp1_rep	five_prime_UTR	3271850	3271950	.	+	.	Parent=Os03t0161302-00
Chr03	irgsp1_rep	five_prime_UTR	3272055	3272549	.	+	.	Parent=Os03t0161302-00
Chr03	irgsp1_rep	five_prime_UTR	3272624	3272740	.	+	.	Parent=Os03t0161302-00
Chr03	irgsp1_rep	five_prime_UTR	3272843	3272846	.	+	.	Parent=Os03t0161302-00
Chr03	irgsp1_rep	CDS	3272847	3272944	.	+	0	Parent=Os03t0161302-00
Chr03	irgsp1_rep	CDS	3273053	3273179	.	+	1	Parent=Os03t0161302-00
Chr03	irgsp1_rep	CDS	3274863	3274930	.	+	0	Parent=Os03t0161302-00
Chr03	irgsp1_rep	CDS	3275953	3276330	.	+	1	Parent=Os03t0161302-00
Chr03	irgsp1_rep	CDS	3276430	3276760	.	+	1	Parent=Os03t0161302-00
Chr03	irgsp1_rep	mRNA	3310338	3312548	.	+	.	ID=Os03t0161400-01;Name=Os03t0161400-01;Locus_id=Os03g0161400;Note=Similar to IQ calmodulin-binding motif family protein%2C expressed.;Transcript_evidence=AK287910 (DDBJ%2C Best hit);ORF_evidence=Q10RF0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);NIAS_FLcDNA=J065213A15;TENOR=Os03t0161400-01;KEGG=Os03t0161400-01
Chr03	irgsp1_rep	five_prime_UTR	3310338	3310438	.	+	.	Parent=Os03t0161400-01
Chr03	irgsp1_rep	five_prime_UTR	3310548	3310570	.	+	.	Parent=Os03t0161400-01
Chr03	irgsp1_rep	CDS	3310571	3310993	.	+	0	Parent=Os03t0161400-01
Chr03	irgsp1_rep	CDS	3311071	3311307	.	+	0	Parent=Os03t0161400-01
Chr03	irgsp1_rep	CDS	3311379	3311930	.	+	0	Parent=Os03t0161400-01
Chr03	irgsp1_rep	CDS	3312310	3312330	.	+	0	Parent=Os03t0161400-01
Chr03	irgsp1_rep	three_prime_UTR	3312331	3312548	.	+	.	Parent=Os03t0161400-01
Chr03	irgsp1_rep	mRNA	3311378	3311898	.	-	.	ID=Os03t0161450-00;Name=Os03t0161450-00;Locus_id=Os03g0161450;Note=Hypothetical protein.;Transcript_evidence=EU948900 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0161450-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	3311809	3311898	.	-	.	Parent=Os03t0161450-00
Chr03	irgsp1_rep	CDS	3311378	3311808	.	-	0	Parent=Os03t0161450-00
Chr03	irgsp1_rep	mRNA	3314782	3317408	.	+	.	ID=Os03t0161500-01;Name=Os03t0161500-01;Locus_id=Os03g0161500;Note=EGF domain containing protein.;Transcript_evidence=AK059911 (DDBJ%2C Best hit);ORF_evidence=NP_001158958.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Epidermal growth factor-like (IPR006210);NIAS_FLcDNA=006-209-C11;Expression=AK059911;TENOR=Os03t0161500-01;KEGG=Os03t0161500-01
Chr03	irgsp1_rep	five_prime_UTR	3314782	3314929	.	+	.	Parent=Os03t0161500-01
Chr03	irgsp1_rep	CDS	3314930	3315074	.	+	0	Parent=Os03t0161500-01
Chr03	irgsp1_rep	CDS	3315179	3315325	.	+	2	Parent=Os03t0161500-01
Chr03	irgsp1_rep	CDS	3316463	3316590	.	+	2	Parent=Os03t0161500-01
Chr03	irgsp1_rep	three_prime_UTR	3316591	3316817	.	+	.	Parent=Os03t0161500-01
Chr03	irgsp1_rep	three_prime_UTR	3316903	3317001	.	+	.	Parent=Os03t0161500-01
Chr03	irgsp1_rep	three_prime_UTR	3317131	3317408	.	+	.	Parent=Os03t0161500-01
Chr03	irgsp1_rep	mRNA	3323449	3324598	.	-	.	ID=Os03t0161600-01;Name=Os03t0161600-01;Locus_id=Os03g0161600;Note=Similar to EPIDERMAL PATTERNING FACTOR-like protein 4.;Transcript_evidence=AK107770 (DDBJ%2C Best hit);ORF_evidence=Q2V3I3 (UniProt);NIAS_FLcDNA=002-133-B06;Expression=AK107770;TENOR=Os03t0161600-01;KEGG=Os03t0161600-01
Chr03	irgsp1_rep	five_prime_UTR	3324345	3324598	.	-	.	Parent=Os03t0161600-01
Chr03	irgsp1_rep	CDS	3324251	3324344	.	-	0	Parent=Os03t0161600-01
Chr03	irgsp1_rep	CDS	3323889	3324163	.	-	2	Parent=Os03t0161600-01
Chr03	irgsp1_rep	three_prime_UTR	3323449	3323888	.	-	.	Parent=Os03t0161600-01
Chr03	irgsp1_rep	mRNA	3338349	3341034	.	+	.	ID=Os03t0161800-01;Name=Os03t0161800-01;Locus_id=Os03g0161800;CGSNL Gene Symbol=SIP2A;CGSNL Gene Name=SUBMERGENCE-INDUCED PROTEIN 2A;Oryzabase Gene Symbol Synonym(s)=Sip2A%2C ARD 2%2C ARD2%2C OsARD2%2C OsARD%2C IDI1%2C OsIDI1;Oryzabase Gene Name Synonym(s)=submergence-induced protein 2A%2C 1%2C 2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2%2C Aci-reductone dioxygenase 2%2C Submergence-induced protein 2A%2C acireductone dioxygenase 2%2C submergence-induced protein2A%2C aci-reductone-dioxygenase-like protein%2C Fe-deficiency-induced protein 1;Note=Similar to SIPL.;Transcript_evidence=AK099497 (DDBJ%2C Best hit);ORF_evidence=Q10RE5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: acireductone dioxygenase [iron(II)-requiring] activity (GO:0010309);InterPro=Acireductone dioxygenase ARD family (IPR004313),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710);NIAS_FLcDNA=J013027P03;Oryzabase=6440;Expression=AK099497;TENOR=Os03t0161800-01;KEGG=Os03t0161800-01 (EC:1.13.11.53%2C EC:1.13.11.54)
Chr03	irgsp1_rep	five_prime_UTR	3338349	3338410	.	+	.	Parent=Os03t0161800-01
Chr03	irgsp1_rep	CDS	3338411	3338428	.	+	0	Parent=Os03t0161800-01
Chr03	irgsp1_rep	CDS	3339370	3339481	.	+	0	Parent=Os03t0161800-01
Chr03	irgsp1_rep	CDS	3339602	3339696	.	+	2	Parent=Os03t0161800-01
Chr03	irgsp1_rep	CDS	3339770	3339884	.	+	0	Parent=Os03t0161800-01
Chr03	irgsp1_rep	CDS	3340004	3340128	.	+	2	Parent=Os03t0161800-01
Chr03	irgsp1_rep	CDS	3340358	3340428	.	+	0	Parent=Os03t0161800-01
Chr03	irgsp1_rep	CDS	3340521	3340581	.	+	1	Parent=Os03t0161800-01
Chr03	irgsp1_rep	three_prime_UTR	3340582	3341034	.	+	.	Parent=Os03t0161800-01
Chr03	irgsp1_rep	mRNA	3339840	3340891	.	+	.	ID=Os03t0161800-02;Name=Os03t0161800-02;Locus_id=Os03g0161800;CGSNL Gene Symbol=SIP2A;CGSNL Gene Name=SUBMERGENCE-INDUCED PROTEIN 2A;Oryzabase Gene Symbol Synonym(s)=Sip2A%2C ARD 2%2C ARD2%2C OsARD2%2C OsARD%2C IDI1%2C OsIDI1;Oryzabase Gene Name Synonym(s)=submergence-induced protein 2A%2C 1%2C 2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2%2C Aci-reductone dioxygenase 2%2C Submergence-induced protein 2A%2C acireductone dioxygenase 2%2C submergence-induced protein2A%2C aci-reductone-dioxygenase-like protein%2C Fe-deficiency-induced protein 1;Note=Similar to 1%2C2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2.;Transcript_evidence=AK061653 (DDBJ%2C Best hit);ORF_evidence=Q10RE5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: acireductone dioxygenase [iron(II)-requiring] activity (GO:0010309);InterPro=Acireductone dioxygenase ARD family (IPR004313),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710);NIAS_FLcDNA=001-036-C08;Oryzabase=6440;Expression=AK061653;TENOR=Os03t0161800-02;KEGG=Os03t0161800-02 (EC:1.13.11.53%2C EC:1.13.11.54)
Chr03	irgsp1_rep	five_prime_UTR	3339840	3339841	.	+	.	Parent=Os03t0161800-02
Chr03	irgsp1_rep	CDS	3339842	3339884	.	+	0	Parent=Os03t0161800-02
Chr03	irgsp1_rep	CDS	3340004	3340128	.	+	2	Parent=Os03t0161800-02
Chr03	irgsp1_rep	CDS	3340358	3340428	.	+	0	Parent=Os03t0161800-02
Chr03	irgsp1_rep	CDS	3340521	3340581	.	+	1	Parent=Os03t0161800-02
Chr03	irgsp1_rep	three_prime_UTR	3340582	3340891	.	+	.	Parent=Os03t0161800-02
Chr03	irgsp1_rep	mRNA	3342277	3344547	.	+	.	ID=Os03t0161900-01;Name=Os03t0161900-01;Locus_id=Os03g0161900;CGSNL Gene Symbol=HSFA2D;CGSNL Gene Name=HEAT STRESS TRANSCRIPTION FACTOR A2D;Oryzabase Gene Symbol Synonym(s)=HSfA2d%2C OsHsfA2d%2C OsHsf-08%2C rHsf7%2C HSF08%2C OsHSF8%2C HSF8%2C HSF7%2C OsHSF7%2C OsHSFA2dI%2C OsHSFA2dII%2C OsHSFA2dIII%2C OsHsfA6b%2C HsfA6b;Oryzabase Gene Name Synonym(s)=Heat stress transcription factor A2d%2C Heat stress transcription factor A-2d%2C Heat stress transcription factor 8%2C Heat stress transcription factor 7;Note=Similar to Isoform 2 of Heat stress transcription factor A-2d.;Transcript_evidence=AK066844 (DDBJ%2C Best hit);ORF_evidence=Q8H7Y6-2 (UniProt);NIAS_FLcDNA=J013088J01;Oryzabase=8551;TENOR=Os03t0161900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	3342277	3342278	.	+	.	Parent=Os03t0161900-01
Chr03	irgsp1_rep	CDS	3342279	3342806	.	+	0	Parent=Os03t0161900-01
Chr03	irgsp1_rep	three_prime_UTR	3342807	3344547	.	+	.	Parent=Os03t0161900-01
Chr03	irgsp1_rep	mRNA	3342254	3344542	.	+	.	ID=Os03t0161900-02;Name=Os03t0161900-02;Locus_id=Os03g0161900;RAP-DB Gene Symbol Synonym(s)=HSFA2D%2C HSfA2d%2C OsHsfA2d%2C OsHsf-08%2C rHsf7%2C HSF08%2C HSF7%2C OsHSF7%2C OsHSFA2dI%2C OsHSFA2dII%2C OsHSFA2dIII;RAP-DB Gene Name Synonym(s)=HEAT STRESS TRANSCRIPTION FACTOR A2D%2C Heat stress transcription factor A2d%2C Heat stress transcription factor A-2d%2C Heat stress transcription factor 8%2C Heat stress transcription factor 7;CGSNL Gene Symbol=HSFA2D;CGSNL Gene Name=HEAT STRESS TRANSCRIPTION FACTOR A2D;Oryzabase Gene Symbol Synonym(s)=HSfA2d%2C OsHsfA2d%2C OsHsf-08%2C rHsf7%2C HSF08%2C OsHSF8%2C HSF8%2C HSF7%2C OsHSF7%2C OsHSFA2dI%2C OsHSFA2dII%2C OsHSFA2dIII%2C OsHsfA6b%2C HsfA6b;Oryzabase Gene Name Synonym(s)=Heat stress transcription factor A2d%2C Heat stress transcription factor A-2d%2C Heat stress transcription factor 8%2C Heat stress transcription factor 7;Note=Heat stress transcriptioon factor%2C High-temperature stress tolerance;Transcript_evidence=AY344489;ORF_evidence=Q8H7Y6-2;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Biological Process: response to heat (GO:0009408),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Cellular Component: nucleus (GO:0005634);InterPro=Heat shock transcription factor family (IPR027725),Heat shock transcription factor%2C plant (IPR027709),Winged helix-turn-helix DNA-binding domain (IPR011991),Heat shock factor (HSF)-type%2C DNA-binding (IPR000232);Manual Curation=April 20%2C 2015;Literature_PMID=19192388,21792744;Oryzabase=8551
Chr03	irgsp1_rep	five_prime_UTR	3342254	3342330	.	+	.	Parent=Os03t0161900-02
Chr03	irgsp1_rep	CDS	3342331	3342618	.	+	0	Parent=Os03t0161900-02
Chr03	irgsp1_rep	CDS	3342726	3342785	.	+	0	Parent=Os03t0161900-02
Chr03	irgsp1_rep	CDS	3343565	3344356	.	+	0	Parent=Os03t0161900-02
Chr03	irgsp1_rep	three_prime_UTR	3344357	3344542	.	+	.	Parent=Os03t0161900-02
Chr03	irgsp1_rep	mRNA	3347543	3349320	.	+	.	ID=Os03t0161950-00;Name=Os03t0161950-00;Locus_id=Os03g0161950;Note=Hypothetical conserved gene.;Transcript_evidence=CT835245 (DDBJ%2C Best hit);ORF_evidence=Q10RE3 (UniProt);TENOR=Os03t0161950-00;KEGG=Os03t0161950-00
Chr03	irgsp1_rep	five_prime_UTR	3347543	3347802	.	+	.	Parent=Os03t0161950-00
Chr03	irgsp1_rep	CDS	3347803	3347886	.	+	0	Parent=Os03t0161950-00
Chr03	irgsp1_rep	CDS	3348155	3348175	.	+	0	Parent=Os03t0161950-00
Chr03	irgsp1_rep	three_prime_UTR	3348176	3348242	.	+	.	Parent=Os03t0161950-00
Chr03	irgsp1_rep	three_prime_UTR	3348923	3349090	.	+	.	Parent=Os03t0161950-00
Chr03	irgsp1_rep	three_prime_UTR	3349209	3349320	.	+	.	Parent=Os03t0161950-00
Chr03	irgsp1_rep	mRNA	3355041	3360448	.	+	.	ID=Os03t0162000-01;Name=Os03t0162000-01;Locus_id=Os03g0162000;RAP-DB Gene Symbol Synonym(s)=COW1%2C OsCOW1%2C oscow1%2C OsYUC8%2C NAL7%2C OsYUCCA8%2C FMO%2C OsFMO(t);RAP-DB Gene Name Synonym(s)=CONSTITUTIVELY WILTED 1%2C CONSTITUTIVELY WILTED1%2C Constitutively wilted 1%2C NARROW LEAF7%2C YUCCA-LIKE GENE 8%2C flavin monooxygenase;CGSNL Gene Symbol=COW1;CGSNL Gene Name=CONSTITUTIVELY WILTED 1;Oryzabase Gene Symbol Synonym(s)=OsCOW1%2C oscow1%2C OsYUC8%2C YUC8%2C NAL7%2C OsYUCCA8%2C YUCCA8%2C FMO%2C OsFMO(t)%2C REIN7%2C YUC8/REIN7;Oryzabase Gene Name Synonym(s)=CONSTITUTIVELY WILTED1%2C Constitutively wilted 1%2C NARROW LEAF7%2C NARROW LEAF 7%2C YUCCA-LIKE GENE 8%2C flavin monooxygenase%2C rice ethylene-insensitive 7;Note=Flavin-containing monooxygenase (FMO)%2C Auxin biosynthesis;Transcript_evidence=AK072466 (Genbank);ORF_evidence=Q10RE2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: flavin-containing monooxygenase activity (GO:0004499),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=Pyridine nucleotide-disulphide oxidoreductase%2C class-II (IPR000103),FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR013027),Flavin monooxygenase-like (IPR020946);NIAS_FLcDNA=J023118H21;Manual Curation=July 31%2C 2009;Literature_PMID=17619151,18293011;Oryzabase=8132;Expression=AK072466;TENOR=Os03t0162000-01;KEGG=Os03t0162000-01 (EC:1.14.13.-)
Chr03	irgsp1_rep	five_prime_UTR	3355041	3355325	.	+	.	Parent=Os03t0162000-01
Chr03	irgsp1_rep	five_prime_UTR	3355409	3355475	.	+	.	Parent=Os03t0162000-01
Chr03	irgsp1_rep	five_prime_UTR	3355704	3356170	.	+	.	Parent=Os03t0162000-01
Chr03	irgsp1_rep	five_prime_UTR	3356311	3357447	.	+	.	Parent=Os03t0162000-01
Chr03	irgsp1_rep	CDS	3357448	3358128	.	+	0	Parent=Os03t0162000-01
Chr03	irgsp1_rep	CDS	3358526	3358774	.	+	0	Parent=Os03t0162000-01
Chr03	irgsp1_rep	CDS	3359505	3359627	.	+	0	Parent=Os03t0162000-01
Chr03	irgsp1_rep	CDS	3359739	3359951	.	+	0	Parent=Os03t0162000-01
Chr03	irgsp1_rep	three_prime_UTR	3359952	3360448	.	+	.	Parent=Os03t0162000-01
Chr03	irgsp1_rep	mRNA	3371375	3372344	.	+	.	ID=Os03t0162200-01;Name=Os03t0162200-01;Locus_id=Os03g0162200;Note=Similar to Histone H2A.;Transcript_evidence=AK121533 (DDBJ%2C Best hit),AK061605 (DDBJ%2C Best hit);ORF_evidence=C5XX54 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H2A (IPR002119),Histone core (IPR007125),Histone-fold (IPR009072);NIAS_FLcDNA=J033030P21,001-030-C05;TENOR=Os03t0162200-01
Chr03	irgsp1_rep	five_prime_UTR	3371375	3371467	.	+	.	Parent=Os03t0162200-01
Chr03	irgsp1_rep	CDS	3371468	3371587	.	+	0	Parent=Os03t0162200-01
Chr03	irgsp1_rep	CDS	3371745	3372041	.	+	0	Parent=Os03t0162200-01
Chr03	irgsp1_rep	three_prime_UTR	3372042	3372344	.	+	.	Parent=Os03t0162200-01
Chr03	irgsp1_rep	mRNA	3378485	3379340	.	-	.	ID=Os03t0162300-01;Name=Os03t0162300-01;Locus_id=Os03g0162300;Note=Conserved hypothetical protein.;Transcript_evidence=AK110675 (DDBJ%2C Best hit);ORF_evidence=B8A7R2 (UniProt);NIAS_FLcDNA=002-169-G08;Expression=AK110675;TENOR=Os03t0162300-01;KEGG=Os03t0162300-01
Chr03	irgsp1_rep	five_prime_UTR	3379339	3379340	.	-	.	Parent=Os03t0162300-01
Chr03	irgsp1_rep	CDS	3379030	3379338	.	-	0	Parent=Os03t0162300-01
Chr03	irgsp1_rep	three_prime_UTR	3378485	3379029	.	-	.	Parent=Os03t0162300-01
Chr03	irgsp1_rep	mRNA	3379748	3381609	.	-	.	ID=Os03t0162400-01;Name=Os03t0162400-01;Locus_id=Os03g0162400;Note=Hypothetical protein.;Transcript_evidence=AK109464 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-127-F05;Expression=AK109464;TENOR=Os03t0162400-01;KEGG=Os03t0162400-01
Chr03	irgsp1_rep	five_prime_UTR	3380730	3381609	.	-	.	Parent=Os03t0162400-01
Chr03	irgsp1_rep	CDS	3380289	3380729	.	-	0	Parent=Os03t0162400-01
Chr03	irgsp1_rep	three_prime_UTR	3379748	3380288	.	-	.	Parent=Os03t0162400-01
Chr03	irgsp1_rep	mRNA	3380200	3381695	.	+	.	ID=Os03t0162500-01;Name=Os03t0162500-01;Locus_id=Os03g0162500;Note=Protein of unknown function DUF506%2C plant family protein.;Transcript_evidence=AK064886 (DDBJ%2C Best hit);ORF_evidence=B6TU09 (UniProt);InterPro=Protein of unknown function DUF506%2C plant (IPR006502);NIAS_FLcDNA=J013000K11;Expression=AK064886;TENOR=Os03t0162500-01;KEGG=Os03t0162500-01
Chr03	irgsp1_rep	five_prime_UTR	3380200	3380385	.	+	.	Parent=Os03t0162500-01
Chr03	irgsp1_rep	CDS	3380386	3380733	.	+	0	Parent=Os03t0162500-01
Chr03	irgsp1_rep	CDS	3380846	3381421	.	+	0	Parent=Os03t0162500-01
Chr03	irgsp1_rep	three_prime_UTR	3381422	3381695	.	+	.	Parent=Os03t0162500-01
Chr03	irgsp1_rep	mRNA	3402625	3404254	.	+	.	ID=Os03t0162650-01;Name=Os03t0162650-01;Locus_id=Os03g0162650;Note=Similar to fatty acid elongase.;Transcript_evidence=AK287634 (DDBJ%2C Best hit);ORF_evidence=Q8H7Z0 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: metabolic process (GO:0008152),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=FAE1/Type III polyketide synthase-like protein (IPR013601),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);NIAS_FLcDNA=J065076C17;TENOR=Os03t0162650-01;KEGG=Os03t0162650-01
Chr03	irgsp1_rep	five_prime_UTR	3402625	3402738	.	+	.	Parent=Os03t0162650-01
Chr03	irgsp1_rep	CDS	3402739	3403554	.	+	0	Parent=Os03t0162650-01
Chr03	irgsp1_rep	three_prime_UTR	3403555	3404254	.	+	.	Parent=Os03t0162650-01
Chr03	irgsp1_rep	mRNA	3402705	3406888	.	-	.	ID=Os03t0162725-00;Name=Os03t0162725-00;Locus_id=Os03g0162725;Note=Hypothetical protein.;Transcript_evidence=tplb0030b11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0162725-00
Chr03	irgsp1_rep	CDS	3406064	3406888	.	-	0	Parent=Os03t0162725-00
Chr03	irgsp1_rep	CDS	3402705	3403443	.	-	0	Parent=Os03t0162725-00
Chr03	irgsp1_rep	mRNA	3405791	3407198	.	+	.	ID=Os03t0162800-01;Name=Os03t0162800-01;Locus_id=Os03g0162800;Note=Similar to Beta-ketoacyl-CoA-synthase.;Transcript_evidence=AK064127 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: metabolic process (GO:0008152),Biological Process: lipid biosynthetic process (GO:0008610),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=FAE1/Type III polyketide synthase-like protein (IPR013601),3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (IPR013747),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);NIAS_FLcDNA=002-102-E01;Expression=AK064127;TENOR=Os03t0162800-01;KEGG=Os03t0162800-01
Chr03	irgsp1_rep	five_prime_UTR	3405791	3406009	.	+	.	Parent=Os03t0162800-01
Chr03	irgsp1_rep	CDS	3406010	3406933	.	+	0	Parent=Os03t0162800-01
Chr03	irgsp1_rep	three_prime_UTR	3406934	3407198	.	+	.	Parent=Os03t0162800-01
Chr03	irgsp1_rep	mRNA	3407989	3413958	.	+	.	ID=Os03t0162900-01;Name=Os03t0162900-01;Locus_id=Os03g0162900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK099687 (DDBJ%2C Best hit);ORF_evidence=XP_002885540.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013072I04;Expression=AK099687;TENOR=Os03t0162900-01;KEGG=Os03t0162900-01
Chr03	irgsp1_rep	five_prime_UTR	3407989	3408117	.	+	.	Parent=Os03t0162900-01
Chr03	irgsp1_rep	five_prime_UTR	3408240	3408311	.	+	.	Parent=Os03t0162900-01
Chr03	irgsp1_rep	CDS	3408312	3410783	.	+	0	Parent=Os03t0162900-01
Chr03	irgsp1_rep	three_prime_UTR	3410784	3410971	.	+	.	Parent=Os03t0162900-01
Chr03	irgsp1_rep	three_prime_UTR	3413687	3413958	.	+	.	Parent=Os03t0162900-01
Chr03	irgsp1_rep	mRNA	3414481	3416562	.	+	.	ID=Os03t0163000-01;Name=Os03t0163000-01;Locus_id=Os03g0163000;Note=Hypothetical conserved gene.;Transcript_evidence=AK103454 (DDBJ%2C Best hit);ORF_evidence=B8ANW3 (UniProt);NIAS_FLcDNA=J033129J03;Expression=AK103454;TENOR=Os03t0163000-01;KEGG=Os03t0163000-01
Chr03	irgsp1_rep	five_prime_UTR	3414481	3414597	.	+	.	Parent=Os03t0163000-01
Chr03	irgsp1_rep	CDS	3414598	3414627	.	+	0	Parent=Os03t0163000-01
Chr03	irgsp1_rep	CDS	3416087	3416233	.	+	0	Parent=Os03t0163000-01
Chr03	irgsp1_rep	three_prime_UTR	3416234	3416562	.	+	.	Parent=Os03t0163000-01
Chr03	irgsp1_rep	mRNA	3417333	3424868	.	+	.	ID=Os03t0163100-01;Name=Os03t0163100-01;Locus_id=Os03g0163100;Note=Protein of unknown function DUF1012 family protein.;Transcript_evidence=AK065571 (DDBJ%2C Best hit);ORF_evidence=NP_568628.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=CASTOR/POLLUX/SYM8 ion channels (IPR010420),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013026K16;Expression=AK065571;TENOR=Os03t0163100-01;KEGG=Os03t0163100-01
Chr03	irgsp1_rep	five_prime_UTR	3417333	3417415	.	+	.	Parent=Os03t0163100-01
Chr03	irgsp1_rep	CDS	3417416	3417510	.	+	0	Parent=Os03t0163100-01
Chr03	irgsp1_rep	CDS	3417602	3417693	.	+	1	Parent=Os03t0163100-01
Chr03	irgsp1_rep	CDS	3417851	3417963	.	+	2	Parent=Os03t0163100-01
Chr03	irgsp1_rep	CDS	3418558	3418823	.	+	0	Parent=Os03t0163100-01
Chr03	irgsp1_rep	CDS	3419006	3419077	.	+	1	Parent=Os03t0163100-01
Chr03	irgsp1_rep	CDS	3419236	3419311	.	+	1	Parent=Os03t0163100-01
Chr03	irgsp1_rep	CDS	3419454	3419552	.	+	0	Parent=Os03t0163100-01
Chr03	irgsp1_rep	CDS	3419645	3419799	.	+	0	Parent=Os03t0163100-01
Chr03	irgsp1_rep	CDS	3419892	3419996	.	+	1	Parent=Os03t0163100-01
Chr03	irgsp1_rep	CDS	3420093	3420179	.	+	1	Parent=Os03t0163100-01
Chr03	irgsp1_rep	CDS	3420672	3420756	.	+	1	Parent=Os03t0163100-01
Chr03	irgsp1_rep	CDS	3420839	3420986	.	+	0	Parent=Os03t0163100-01
Chr03	irgsp1_rep	CDS	3421681	3421757	.	+	2	Parent=Os03t0163100-01
Chr03	irgsp1_rep	CDS	3421848	3421928	.	+	0	Parent=Os03t0163100-01
Chr03	irgsp1_rep	CDS	3422350	3422541	.	+	0	Parent=Os03t0163100-01
Chr03	irgsp1_rep	CDS	3422628	3422741	.	+	0	Parent=Os03t0163100-01
Chr03	irgsp1_rep	CDS	3422863	3422955	.	+	0	Parent=Os03t0163100-01
Chr03	irgsp1_rep	CDS	3423077	3423203	.	+	0	Parent=Os03t0163100-01
Chr03	irgsp1_rep	CDS	3423288	3423364	.	+	2	Parent=Os03t0163100-01
Chr03	irgsp1_rep	CDS	3423668	3423715	.	+	0	Parent=Os03t0163100-01
Chr03	irgsp1_rep	CDS	3423801	3423870	.	+	0	Parent=Os03t0163100-01
Chr03	irgsp1_rep	CDS	3423950	3424023	.	+	2	Parent=Os03t0163100-01
Chr03	irgsp1_rep	CDS	3424108	3424218	.	+	0	Parent=Os03t0163100-01
Chr03	irgsp1_rep	CDS	3424435	3424554	.	+	0	Parent=Os03t0163100-01
Chr03	irgsp1_rep	three_prime_UTR	3424555	3424868	.	+	.	Parent=Os03t0163100-01
Chr03	irgsp1_rep	mRNA	3417849	3424584	.	-	.	ID=Os03t0163150-00;Name=Os03t0163150-00;Locus_id=Os03g0163150;Note=Hypothetical protein.;Transcript_evidence=tplb0032i20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0163150-00
Chr03	irgsp1_rep	five_prime_UTR	3424449	3424584	.	-	.	Parent=Os03t0163150-00
Chr03	irgsp1_rep	five_prime_UTR	3424099	3424229	.	-	.	Parent=Os03t0163150-00
Chr03	irgsp1_rep	five_prime_UTR	3423948	3424013	.	-	.	Parent=Os03t0163150-00
Chr03	irgsp1_rep	five_prime_UTR	3423817	3423868	.	-	.	Parent=Os03t0163150-00
Chr03	irgsp1_rep	five_prime_UTR	3423666	3423726	.	-	.	Parent=Os03t0163150-00
Chr03	irgsp1_rep	five_prime_UTR	3423269	3423362	.	-	.	Parent=Os03t0163150-00
Chr03	irgsp1_rep	five_prime_UTR	3423074	3423189	.	-	.	Parent=Os03t0163150-00
Chr03	irgsp1_rep	five_prime_UTR	3422851	3422952	.	-	.	Parent=Os03t0163150-00
Chr03	irgsp1_rep	five_prime_UTR	3422640	3422727	.	-	.	Parent=Os03t0163150-00
Chr03	irgsp1_rep	five_prime_UTR	3422357	3422548	.	-	.	Parent=Os03t0163150-00
Chr03	irgsp1_rep	five_prime_UTR	3421848	3421938	.	-	.	Parent=Os03t0163150-00
Chr03	irgsp1_rep	five_prime_UTR	3421686	3421757	.	-	.	Parent=Os03t0163150-00
Chr03	irgsp1_rep	five_prime_UTR	3420853	3420994	.	-	.	Parent=Os03t0163150-00
Chr03	irgsp1_rep	five_prime_UTR	3420650	3420770	.	-	.	Parent=Os03t0163150-00
Chr03	irgsp1_rep	five_prime_UTR	3420086	3420159	.	-	.	Parent=Os03t0163150-00
Chr03	irgsp1_rep	five_prime_UTR	3419883	3419984	.	-	.	Parent=Os03t0163150-00
Chr03	irgsp1_rep	five_prime_UTR	3419645	3419792	.	-	.	Parent=Os03t0163150-00
Chr03	irgsp1_rep	five_prime_UTR	3419452	3419552	.	-	.	Parent=Os03t0163150-00
Chr03	irgsp1_rep	five_prime_UTR	3419243	3419305	.	-	.	Parent=Os03t0163150-00
Chr03	irgsp1_rep	five_prime_UTR	3418994	3419079	.	-	.	Parent=Os03t0163150-00
Chr03	irgsp1_rep	five_prime_UTR	3418773	3418820	.	-	.	Parent=Os03t0163150-00
Chr03	irgsp1_rep	CDS	3418564	3418772	.	-	0	Parent=Os03t0163150-00
Chr03	irgsp1_rep	CDS	3417910	3417958	.	-	1	Parent=Os03t0163150-00
Chr03	irgsp1_rep	three_prime_UTR	3417849	3417909	.	-	.	Parent=Os03t0163150-00
Chr03	irgsp1_rep	mRNA	3424904	3426962	.	+	.	ID=Os03t0163200-01;Name=Os03t0163200-01;Locus_id=Os03g0163200;Note=Protein of unknown function DUF247%2C plant family protein.;Transcript_evidence=AK108613 (DDBJ%2C Best hit);ORF_evidence=Q8H7Z2 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);NIAS_FLcDNA=002-147-A12;Expression=AK108613;TENOR=Os03t0163200-01;KEGG=Os03t0163200-01
Chr03	irgsp1_rep	five_prime_UTR	3424904	3425047	.	+	.	Parent=Os03t0163200-01
Chr03	irgsp1_rep	CDS	3425048	3425072	.	+	0	Parent=Os03t0163200-01
Chr03	irgsp1_rep	CDS	3425149	3426533	.	+	2	Parent=Os03t0163200-01
Chr03	irgsp1_rep	three_prime_UTR	3426534	3426962	.	+	.	Parent=Os03t0163200-01
Chr03	irgsp1_rep	mRNA	3427553	3432223	.	+	.	ID=Os03t0163300-01;Name=Os03t0163300-01;Locus_id=Os03g0163300;Oryzabase Gene Symbol Synonym(s)=OsGR1%2C GR1%2C OsGR2;Oryzabase Gene Name Synonym(s)=glutathione reductase 1;Note=Similar to Glutathione reductase (Fragment).;Transcript_evidence=AK103418 (DDBJ%2C Best hit);ORF_evidence=A8CCK2 (UniProt);GO=Biological Process: glutathione metabolic process (GO:0006749),Biological Process: cell redox homeostasis (GO:0045454),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: cytoplasm (GO:0005737),Molecular Function: glutathione-disulfide reductase activity (GO:0004362),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on a sulfur group of donors%2C NAD or NADP as acceptor (GO:0016668),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=Pyridine nucleotide-disulphide oxidoreductase%2C dimerisation (IPR004099),Glutathione-disulphide reductase (IPR006324),Pyridine nucleotide-disulphide oxidoreductase%2C class I%2C active site (IPR012999),FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR013027),FAD/NAD-linked reductase%2C dimerisation (IPR016156),Pyridine nucleotide-disulphide oxidoreductase%2C FAD/NAD(P)-binding domain (IPR023753);NIAS_FLcDNA=J033128J11;Oryzabase=10208;Expression=AK103418;TENOR=Os03t0163300-01;KEGG=Os03t0163300-01 (EC:1.8.1.7)
Chr03	irgsp1_rep	five_prime_UTR	3427553	3427634	.	+	.	Parent=Os03t0163300-01
Chr03	irgsp1_rep	CDS	3427635	3428008	.	+	0	Parent=Os03t0163300-01
Chr03	irgsp1_rep	CDS	3428885	3429110	.	+	1	Parent=Os03t0163300-01
Chr03	irgsp1_rep	CDS	3429217	3429495	.	+	0	Parent=Os03t0163300-01
Chr03	irgsp1_rep	CDS	3429587	3429763	.	+	0	Parent=Os03t0163300-01
Chr03	irgsp1_rep	CDS	3429866	3429919	.	+	0	Parent=Os03t0163300-01
Chr03	irgsp1_rep	CDS	3430019	3430167	.	+	0	Parent=Os03t0163300-01
Chr03	irgsp1_rep	CDS	3430747	3430810	.	+	1	Parent=Os03t0163300-01
Chr03	irgsp1_rep	CDS	3430883	3431053	.	+	0	Parent=Os03t0163300-01
Chr03	irgsp1_rep	CDS	3431135	3431272	.	+	0	Parent=Os03t0163300-01
Chr03	irgsp1_rep	CDS	3431393	3431428	.	+	0	Parent=Os03t0163300-01
Chr03	irgsp1_rep	three_prime_UTR	3431429	3431440	.	+	.	Parent=Os03t0163300-01
Chr03	irgsp1_rep	three_prime_UTR	3431885	3432223	.	+	.	Parent=Os03t0163300-01
Chr03	irgsp1_rep	mRNA	3433024	3434082	.	-	.	ID=Os03t0163400-00;Name=Os03t0163400-00;Locus_id=Os03g0163400;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8S5T2 (UniProt);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);TENOR=Os03t0163400-00;KEGG=Os03t0163400-00
Chr03	irgsp1_rep	CDS	3433024	3434082	.	-	0	Parent=Os03t0163400-00
Chr03	irgsp1_rep	mRNA	3435024	3439329	.	+	.	ID=Os03t0163500-01;Name=Os03t0163500-01;Locus_id=Os03g0163500;Note=Exocyst complex subunit Sec15-like family protein.;Transcript_evidence=AK067219 (DDBJ%2C Best hit);ORF_evidence=NP_191223.1 (RefSeq);GO=Biological Process: vesicle docking involved in exocytosis (GO:0006904),Cellular Component: exocyst (GO:0000145);InterPro=Exocyst complex subunit Sec15-like (IPR007225);NIAS_FLcDNA=J013098I02;Expression=AK067219;TENOR=Os03t0163500-01;KEGG=Os03t0163500-01
Chr03	irgsp1_rep	five_prime_UTR	3435024	3436834	.	+	.	Parent=Os03t0163500-01
Chr03	irgsp1_rep	CDS	3436835	3439201	.	+	0	Parent=Os03t0163500-01
Chr03	irgsp1_rep	three_prime_UTR	3439202	3439329	.	+	.	Parent=Os03t0163500-01
Chr03	irgsp1_rep	mRNA	3435736	3439334	.	+	.	ID=Os03t0163500-02;Name=Os03t0163500-02;Locus_id=Os03g0163500;Note=Exocyst complex subunit Sec15-like family protein.;Transcript_evidence=AK072441 (DDBJ%2C Best hit);ORF_evidence=NP_191223.1 (RefSeq);GO=Biological Process: vesicle docking involved in exocytosis (GO:0006904),Cellular Component: exocyst (GO:0000145);InterPro=Exocyst complex subunit Sec15-like (IPR007225);NIAS_FLcDNA=J023111E14;Expression=AK072441;TENOR=Os03t0163500-02;KEGG=Os03t0163500-02
Chr03	irgsp1_rep	five_prime_UTR	3435736	3435907	.	+	.	Parent=Os03t0163500-02
Chr03	irgsp1_rep	five_prime_UTR	3436828	3436834	.	+	.	Parent=Os03t0163500-02
Chr03	irgsp1_rep	CDS	3436835	3439201	.	+	0	Parent=Os03t0163500-02
Chr03	irgsp1_rep	three_prime_UTR	3439202	3439334	.	+	.	Parent=Os03t0163500-02
Chr03	irgsp1_rep	mRNA	3444764	3445006	.	-	.	ID=Os03t0163600-00;Name=Os03t0163600-00;Locus_id=Os03g0163600;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8ANW7 (UniProt);TENOR=Os03t0163600-00
Chr03	irgsp1_rep	CDS	3444764	3445006	.	-	0	Parent=Os03t0163600-00
Chr03	irgsp1_rep	mRNA	3452742	3453008	.	-	.	ID=Os03t0163900-00;Name=Os03t0163900-00;Locus_id=Os03g0163900;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8S5T7 (UniProt);TENOR=Os03t0163900-00
Chr03	irgsp1_rep	CDS	3452742	3453008	.	-	0	Parent=Os03t0163900-00
Chr03	irgsp1_rep	mRNA	3463704	3467094	.	+	.	ID=Os03t0164100-01;Name=Os03t0164100-01;Locus_id=Os03g0164100;Note=Hypothetical protein.;Transcript_evidence=AK071902 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013061H24;Expression=AK071902;TENOR=Os03t0164100-01;KEGG=Os03t0164100-01
Chr03	irgsp1_rep	five_prime_UTR	3463704	3463813	.	+	.	Parent=Os03t0164100-01
Chr03	irgsp1_rep	five_prime_UTR	3463913	3464031	.	+	.	Parent=Os03t0164100-01
Chr03	irgsp1_rep	CDS	3464032	3464295	.	+	0	Parent=Os03t0164100-01
Chr03	irgsp1_rep	three_prime_UTR	3464296	3467094	.	+	.	Parent=Os03t0164100-01
Chr03	irgsp1_rep	mRNA	3463728	3467281	.	+	.	ID=Os03t0164100-02;Name=Os03t0164100-02;Locus_id=Os03g0164100;Note=Hypothetical protein.;Transcript_evidence=AK073082 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033010P19;Expression=AK073082;TENOR=Os03t0164100-02;KEGG=Os03t0164100-02
Chr03	irgsp1_rep	five_prime_UTR	3463728	3464031	.	+	.	Parent=Os03t0164100-02
Chr03	irgsp1_rep	CDS	3464032	3464295	.	+	0	Parent=Os03t0164100-02
Chr03	irgsp1_rep	three_prime_UTR	3464296	3467281	.	+	.	Parent=Os03t0164100-02
Chr03	irgsp1_rep	mRNA	3468343	3469139	.	-	.	ID=Os03t0164200-01;Name=Os03t0164200-01;Locus_id=Os03g0164200;Note=Zinc finger%2C GRF-type domain containing protein.;Transcript_evidence=AK121785 (DDBJ%2C Best hit),AK064056 (DDBJ%2C Best hit);ORF_evidence=Q8S5U0 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C GRF-type (IPR010666);NIAS_FLcDNA=J033094A22,001-125-F05;Expression=AK121785;TENOR=Os03t0164200-01;KEGG=Os03t0164200-01
Chr03	irgsp1_rep	five_prime_UTR	3469093	3469139	.	-	.	Parent=Os03t0164200-01
Chr03	irgsp1_rep	CDS	3469033	3469092	.	-	0	Parent=Os03t0164200-01
Chr03	irgsp1_rep	CDS	3468792	3468962	.	-	0	Parent=Os03t0164200-01
Chr03	irgsp1_rep	CDS	3468483	3468719	.	-	0	Parent=Os03t0164200-01
Chr03	irgsp1_rep	three_prime_UTR	3468343	3468482	.	-	.	Parent=Os03t0164200-01
Chr03	irgsp1_rep	mRNA	3469731	3470961	.	+	.	ID=Os03t0164300-01;Name=Os03t0164300-01;Locus_id=Os03g0164300;Note=Conserved hypothetical protein.;Transcript_evidence=AK070845 (DDBJ%2C Best hit);ORF_evidence=B8ANX3 (UniProt);NIAS_FLcDNA=J023070F17;TENOR=Os03t0164300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	3469731	3469902	.	+	.	Parent=Os03t0164300-01
Chr03	irgsp1_rep	five_prime_UTR	3470003	3470020	.	+	.	Parent=Os03t0164300-01
Chr03	irgsp1_rep	CDS	3470021	3470069	.	+	0	Parent=Os03t0164300-01
Chr03	irgsp1_rep	CDS	3470146	3470208	.	+	2	Parent=Os03t0164300-01
Chr03	irgsp1_rep	CDS	3470297	3470436	.	+	2	Parent=Os03t0164300-01
Chr03	irgsp1_rep	three_prime_UTR	3470437	3470450	.	+	.	Parent=Os03t0164300-01
Chr03	irgsp1_rep	three_prime_UTR	3470514	3470961	.	+	.	Parent=Os03t0164300-01
Chr03	irgsp1_rep	mRNA	3471177	3473588	.	-	.	ID=Os03t0164400-01;Name=Os03t0164400-01;Locus_id=Os03g0164400;Note=Hypothetical conserved gene.;Transcript_evidence=AK063366 (DDBJ%2C Best hit);ORF_evidence=Q8S5U2 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=FAR1 DNA binding domain (IPR004330),Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);NIAS_FLcDNA=001-114-D10;Expression=AK063366;TENOR=Os03t0164400-01;KEGG=Os03t0164400-01
Chr03	irgsp1_rep	five_prime_UTR	3473587	3473588	.	-	.	Parent=Os03t0164400-01
Chr03	irgsp1_rep	CDS	3471895	3473586	.	-	0	Parent=Os03t0164400-01
Chr03	irgsp1_rep	three_prime_UTR	3471477	3471894	.	-	.	Parent=Os03t0164400-01
Chr03	irgsp1_rep	three_prime_UTR	3471177	3471390	.	-	.	Parent=Os03t0164400-01
Chr03	irgsp1_rep	mRNA	3479411	3482159	.	+	.	ID=Os03t0164700-01;Name=Os03t0164700-01;Locus_id=Os03g0164700;Note=Carbohydrate/purine kinase domain containing protein.;Transcript_evidence=AK289019 (DDBJ%2C Best hit);ORF_evidence=B6SW58 (UniProt);InterPro=Carbohydrate/purine kinase (IPR011611);NIAS_FLcDNA=J090090B03;TENOR=Os03t0164700-01;KEGG=Os03t0164700-01
Chr03	irgsp1_rep	five_prime_UTR	3479411	3479441	.	+	.	Parent=Os03t0164700-01
Chr03	irgsp1_rep	CDS	3479442	3479774	.	+	0	Parent=Os03t0164700-01
Chr03	irgsp1_rep	CDS	3480256	3480503	.	+	0	Parent=Os03t0164700-01
Chr03	irgsp1_rep	CDS	3480638	3480929	.	+	1	Parent=Os03t0164700-01
Chr03	irgsp1_rep	CDS	3481270	3481422	.	+	0	Parent=Os03t0164700-01
Chr03	irgsp1_rep	CDS	3481501	3481887	.	+	0	Parent=Os03t0164700-01
Chr03	irgsp1_rep	three_prime_UTR	3481888	3482159	.	+	.	Parent=Os03t0164700-01
Chr03	irgsp1_rep	mRNA	3483353	3485708	.	-	.	ID=Os03t0164800-00;Name=Os03t0164800-00;Locus_id=Os03g0164800;Oryzabase Gene Symbol Synonym(s)=OsSTA90;Note=Similar to SKIP interacting protein 8 (Fragment).;Transcript_evidence=ab initio prediction;ORF_evidence=B8Q894 (UniProt);InterPro=Protein of unknown function DUF593 (IPR007656);Oryzabase=19386;TENOR=Os03t0164800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	3485363	3485708	.	-	0	Parent=Os03t0164800-00
Chr03	irgsp1_rep	CDS	3484694	3485269	.	-	2	Parent=Os03t0164800-00
Chr03	irgsp1_rep	CDS	3483353	3484617	.	-	2	Parent=Os03t0164800-00
Chr03	irgsp1_rep	mRNA	3487755	3488340	.	+	.	ID=Os03t0164901-00;Name=Os03t0164901-00;Locus_id=Os03g0164901;Note=Hypothetical gene.;Transcript_evidence=CT835285 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os03t0164901-00;KEGG=Os03t0164901-00
Chr03	irgsp1_rep	five_prime_UTR	3487755	3487835	.	+	.	Parent=Os03t0164901-00
Chr03	irgsp1_rep	CDS	3487836	3488063	.	+	0	Parent=Os03t0164901-00
Chr03	irgsp1_rep	three_prime_UTR	3488064	3488340	.	+	.	Parent=Os03t0164901-00
Chr03	irgsp1_rep	mRNA	3489726	3496319	.	-	.	ID=Os03t0165000-00;Name=Os03t0165000-00;Locus_id=Os03g0165000;Oryzabase Gene Symbol Synonym(s)=TOP3%2C TOP3alpha;Oryzabase Gene Name Synonym(s)=topoisomerase 3%2C Topoisomerase 3alpha;Note=Similar to DNA topoisomerase family protein%2C expressed.;Transcript_evidence=BT041437 (DDBJ);ORF_evidence=B9FBH7 (UniProt);GO=Biological Process: DNA topological change (GO:0006265),Cellular Component: Chromosome (GO:0005694),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA topoisomerase activity (GO:0003916),Molecular Function: DNA topoisomerase type I activity (GO:0003917);InterPro=DNA topoisomerase%2C type IA (IPR000380),DNA topoisomerase%2C type IA%2C DNA-binding (IPR003602),DNA topoisomerase%2C type IA%2C central (IPR013497),DNA topoisomerase%2C type IA%2C zn finger (IPR013498),DNA topoisomerase%2C type IA%2C central region%2C subdomain 1 (IPR013824),DNA topoisomerase%2C type IA%2C central region%2C subdomain 2 (IPR013825),DNA topoisomerase%2C type IA%2C central region%2C subdomain 3 (IPR013826),DNA topoisomerase%2C type IA%2C core domain (IPR023405);Oryzabase=21310;TENOR=Os03t0165000-00;KEGG=Os03t0165000-00 (EC:5.99.1.2)
Chr03	irgsp1_rep	five_prime_UTR	3496311	3496319	.	-	.	Parent=Os03t0165000-00
Chr03	irgsp1_rep	CDS	3496131	3496310	.	-	0	Parent=Os03t0165000-00
Chr03	irgsp1_rep	CDS	3495884	3496012	.	-	0	Parent=Os03t0165000-00
Chr03	irgsp1_rep	CDS	3494972	3495046	.	-	0	Parent=Os03t0165000-00
Chr03	irgsp1_rep	CDS	3494533	3494622	.	-	0	Parent=Os03t0165000-00
Chr03	irgsp1_rep	CDS	3494321	3494425	.	-	0	Parent=Os03t0165000-00
Chr03	irgsp1_rep	CDS	3492677	3492711	.	-	0	Parent=Os03t0165000-00
Chr03	irgsp1_rep	CDS	3492470	3492599	.	-	1	Parent=Os03t0165000-00
Chr03	irgsp1_rep	CDS	3492277	3492329	.	-	0	Parent=Os03t0165000-00
Chr03	irgsp1_rep	CDS	3492107	3492203	.	-	1	Parent=Os03t0165000-00
Chr03	irgsp1_rep	CDS	3491958	3491996	.	-	0	Parent=Os03t0165000-00
Chr03	irgsp1_rep	CDS	3491709	3491787	.	-	0	Parent=Os03t0165000-00
Chr03	irgsp1_rep	CDS	3491517	3491588	.	-	2	Parent=Os03t0165000-00
Chr03	irgsp1_rep	CDS	3491262	3491358	.	-	2	Parent=Os03t0165000-00
Chr03	irgsp1_rep	CDS	3490761	3490776	.	-	1	Parent=Os03t0165000-00
Chr03	irgsp1_rep	three_prime_UTR	3490623	3490760	.	-	.	Parent=Os03t0165000-00
Chr03	irgsp1_rep	three_prime_UTR	3490391	3490505	.	-	.	Parent=Os03t0165000-00
Chr03	irgsp1_rep	three_prime_UTR	3489726	3490032	.	-	.	Parent=Os03t0165000-00
Chr03	irgsp1_rep	mRNA	3489771	3500181	.	+	.	ID=Os03t0165025-00;Name=Os03t0165025-00;Locus_id=Os03g0165025;Note=Hypothetical protein.;Transcript_evidence=tplb0023f20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0165025-00
Chr03	irgsp1_rep	five_prime_UTR	3489771	3489870	.	+	.	Parent=Os03t0165025-00
Chr03	irgsp1_rep	CDS	3489871	3490010	.	+	0	Parent=Os03t0165025-00
Chr03	irgsp1_rep	CDS	3490380	3490488	.	+	1	Parent=Os03t0165025-00
Chr03	irgsp1_rep	three_prime_UTR	3490489	3490509	.	+	.	Parent=Os03t0165025-00
Chr03	irgsp1_rep	three_prime_UTR	3490620	3490795	.	+	.	Parent=Os03t0165025-00
Chr03	irgsp1_rep	three_prime_UTR	3491131	3491392	.	+	.	Parent=Os03t0165025-00
Chr03	irgsp1_rep	three_prime_UTR	3491671	3491793	.	+	.	Parent=Os03t0165025-00
Chr03	irgsp1_rep	three_prime_UTR	3492076	3492214	.	+	.	Parent=Os03t0165025-00
Chr03	irgsp1_rep	three_prime_UTR	3492286	3492328	.	+	.	Parent=Os03t0165025-00
Chr03	irgsp1_rep	three_prime_UTR	3492469	3492644	.	+	.	Parent=Os03t0165025-00
Chr03	irgsp1_rep	three_prime_UTR	3494337	3494411	.	+	.	Parent=Os03t0165025-00
Chr03	irgsp1_rep	three_prime_UTR	3494516	3494608	.	+	.	Parent=Os03t0165025-00
Chr03	irgsp1_rep	three_prime_UTR	3494950	3495031	.	+	.	Parent=Os03t0165025-00
Chr03	irgsp1_rep	three_prime_UTR	3495868	3496013	.	+	.	Parent=Os03t0165025-00
Chr03	irgsp1_rep	three_prime_UTR	3496132	3496294	.	+	.	Parent=Os03t0165025-00
Chr03	irgsp1_rep	three_prime_UTR	3496933	3497020	.	+	.	Parent=Os03t0165025-00
Chr03	irgsp1_rep	three_prime_UTR	3497141	3497269	.	+	.	Parent=Os03t0165025-00
Chr03	irgsp1_rep	three_prime_UTR	3497380	3497453	.	+	.	Parent=Os03t0165025-00
Chr03	irgsp1_rep	three_prime_UTR	3497519	3497642	.	+	.	Parent=Os03t0165025-00
Chr03	irgsp1_rep	three_prime_UTR	3497724	3497853	.	+	.	Parent=Os03t0165025-00
Chr03	irgsp1_rep	three_prime_UTR	3498129	3498201	.	+	.	Parent=Os03t0165025-00
Chr03	irgsp1_rep	three_prime_UTR	3498430	3498597	.	+	.	Parent=Os03t0165025-00
Chr03	irgsp1_rep	three_prime_UTR	3499775	3500181	.	+	.	Parent=Os03t0165025-00
Chr03	irgsp1_rep	mRNA	3500612	3501013	.	+	.	ID=Os03t0165050-00;Name=Os03t0165050-00;Locus_id=Os03g0165050;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os03t0165050-00;KEGG=Os03t0165050-00
Chr03	irgsp1_rep	CDS	3500612	3501013	.	+	0	Parent=Os03t0165050-00
Chr03	irgsp1_rep	mRNA	3501294	3504478	.	-	.	ID=Os03t0165100-00;Name=Os03t0165100-00;Locus_id=Os03g0165100;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001049065.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os03t0165100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	3502557	3504478	.	-	0	Parent=Os03t0165100-00
Chr03	irgsp1_rep	CDS	3502389	3502479	.	-	1	Parent=Os03t0165100-00
Chr03	irgsp1_rep	CDS	3501780	3501887	.	-	0	Parent=Os03t0165100-00
Chr03	irgsp1_rep	CDS	3501294	3501359	.	-	0	Parent=Os03t0165100-00
Chr03	irgsp1_rep	mRNA	3506365	3512883	.	+	.	ID=Os03t0165266-00;Name=Os03t0165266-00;Locus_id=Os03g0165266;CGSNL Gene Symbol=AP2/EREBP85;CGSNL Gene Name=APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 85;Oryzabase Gene Symbol Synonym(s)=AP2/EREBP#085%2C DRD1%2C OsDRD1;Oryzabase Gene Name Synonym(s)=APETALA2/ethylene-responsive element binding protein 85;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001173279.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524);InterPro=SNF2-related (IPR000330),Helicase%2C C-terminal (IPR001650),DEAD-like helicase (IPR014001);Oryzabase=10651;TENOR=Os03t0165266-00
Chr03	irgsp1_rep	CDS	3506365	3506522	.	+	0	Parent=Os03t0165266-00
Chr03	irgsp1_rep	CDS	3506913	3507122	.	+	1	Parent=Os03t0165266-00
Chr03	irgsp1_rep	CDS	3507385	3507468	.	+	1	Parent=Os03t0165266-00
Chr03	irgsp1_rep	CDS	3508155	3508767	.	+	1	Parent=Os03t0165266-00
Chr03	irgsp1_rep	CDS	3509569	3509796	.	+	0	Parent=Os03t0165266-00
Chr03	irgsp1_rep	CDS	3510483	3510650	.	+	0	Parent=Os03t0165266-00
Chr03	irgsp1_rep	CDS	3511041	3512800	.	+	0	Parent=Os03t0165266-00
Chr03	irgsp1_rep	CDS	3512880	3512883	.	+	1	Parent=Os03t0165266-00
Chr03	irgsp1_rep	mRNA	3513371	3517214	.	-	.	ID=Os03t0165300-01;Name=Os03t0165300-01;Locus_id=Os03g0165300;RAP-DB Gene Symbol Synonym(s)=OsBLH6;RAP-DB Gene Name Synonym(s)=bell-like homeodomain-containing transcription factor 6;Oryzabase Gene Symbol Synonym(s)=OsBLH6;Oryzabase Gene Name Synonym(s)=BEL1-like homeodomain gene 6%2C bell-like homeodomain-containing transcription factor 6;Note=Bell-like homeodomain-containing transcription factor%2C Secondary cell wall formation;Transcript_evidence=AK099829;ORF_evidence=Q10RB5;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Homeobox-like domain superfamily (IPR009057),POX domain (IPR006563),Homeobox domain (IPR001356),Homeobox KN domain (IPR008422);NIAS_FLcDNA=J013104D06;Manual Curation=October 20%2C 2020;Literature_PMID=24089432;Oryzabase=15020;TENOR=Os03t0165300-01;Subcellular location=nucleus (GO:0005634)
Chr03	irgsp1_rep	three_prime_UTR	3516911	3517214	.	-	.	Parent=Os03t0165300-01
Chr03	irgsp1_rep	three_prime_UTR	3516404	3516467	.	-	.	Parent=Os03t0165300-01
Chr03	irgsp1_rep	three_prime_UTR	3515827	3515973	.	-	.	Parent=Os03t0165300-01
Chr03	irgsp1_rep	CDS	3515137	3515826	.	-	0	Parent=Os03t0165300-01
Chr03	irgsp1_rep	CDS	3514660	3515042	.	-	0	Parent=Os03t0165300-01
Chr03	irgsp1_rep	CDS	3514517	3514577	.	-	1	Parent=Os03t0165300-01
Chr03	irgsp1_rep	CDS	3513750	3514418	.	-	0	Parent=Os03t0165300-01
Chr03	irgsp1_rep	three_prime_UTR	3513371	3513749	.	-	.	Parent=Os03t0165300-01
Chr03	irgsp1_rep	mRNA	3513413	3516973	.	-	.	ID=Os03t0165300-02;Name=Os03t0165300-02;Locus_id=Os03g0165300;Oryzabase Gene Symbol Synonym(s)=OsBLH6;Oryzabase Gene Name Synonym(s)=BEL1-like homeodomain gene 6%2C bell-like homeodomain-containing transcription factor 6;Note=Homeobox domain containing protein.;Transcript_evidence=AK105752 (DDBJ%2C Best hit);ORF_evidence=Q8S5U8 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),POX (IPR006563),Homeobox KN domain (IPR008422),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);NIAS_FLcDNA=001-202-C01;Manual Curation=October 20%2C 2020;Oryzabase=15020;TENOR=Os03t0165300-02
Chr03	irgsp1_rep	five_prime_UTR	3516911	3516973	.	-	.	Parent=Os03t0165300-02
Chr03	irgsp1_rep	five_prime_UTR	3516404	3516467	.	-	.	Parent=Os03t0165300-02
Chr03	irgsp1_rep	five_prime_UTR	3515827	3515973	.	-	.	Parent=Os03t0165300-02
Chr03	irgsp1_rep	CDS	3515137	3515826	.	-	0	Parent=Os03t0165300-02
Chr03	irgsp1_rep	CDS	3514660	3515042	.	-	0	Parent=Os03t0165300-02
Chr03	irgsp1_rep	CDS	3514517	3514577	.	-	1	Parent=Os03t0165300-02
Chr03	irgsp1_rep	CDS	3513750	3514418	.	-	0	Parent=Os03t0165300-02
Chr03	irgsp1_rep	three_prime_UTR	3513413	3513749	.	-	.	Parent=Os03t0165300-02
Chr03	irgsp1_rep	mRNA	3513371	3517151	.	-	.	ID=Os03t0165300-03;Name=Os03t0165300-03;Locus_id=Os03g0165300;Oryzabase Gene Symbol Synonym(s)=OsBLH6;Oryzabase Gene Name Synonym(s)=BEL1-like homeodomain gene 6%2C bell-like homeodomain-containing transcription factor 6;Note=Conserved hypothetical protein.;Transcript_evidence=AK068034 (DDBJ%2C Best hit);ORF_evidence=Q8S5U8 (UniProt);NIAS_FLcDNA=J013131E13;Manual Curation=October 20%2C 2020;Oryzabase=15020;TENOR=Os03t0165300-03
Chr03	irgsp1_rep	five_prime_UTR	3516911	3517151	.	-	.	Parent=Os03t0165300-03
Chr03	irgsp1_rep	five_prime_UTR	3516404	3516467	.	-	.	Parent=Os03t0165300-03
Chr03	irgsp1_rep	five_prime_UTR	3515827	3515973	.	-	.	Parent=Os03t0165300-03
Chr03	irgsp1_rep	CDS	3515137	3515826	.	-	0	Parent=Os03t0165300-03
Chr03	irgsp1_rep	CDS	3514660	3515042	.	-	0	Parent=Os03t0165300-03
Chr03	irgsp1_rep	CDS	3514517	3514577	.	-	1	Parent=Os03t0165300-03
Chr03	irgsp1_rep	CDS	3513750	3514418	.	-	0	Parent=Os03t0165300-03
Chr03	irgsp1_rep	three_prime_UTR	3513371	3513749	.	-	.	Parent=Os03t0165300-03
Chr03	irgsp1_rep	mRNA	3513423	3515847	.	+	.	ID=Os03t0165350-00;Name=Os03t0165350-00;Locus_id=Os03g0165350;Note=Hypothetical protein.;Transcript_evidence=tplb0025a22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0165350-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	3513423	3514098	.	+	.	Parent=Os03t0165350-00
Chr03	irgsp1_rep	CDS	3514099	3514409	.	+	0	Parent=Os03t0165350-00
Chr03	irgsp1_rep	CDS	3514506	3514573	.	+	1	Parent=Os03t0165350-00
Chr03	irgsp1_rep	CDS	3514656	3515027	.	+	2	Parent=Os03t0165350-00
Chr03	irgsp1_rep	CDS	3515124	3515140	.	+	2	Parent=Os03t0165350-00
Chr03	irgsp1_rep	three_prime_UTR	3515141	3515847	.	+	.	Parent=Os03t0165350-00
Chr03	irgsp1_rep	mRNA	3521804	3522235	.	+	.	ID=Os03t0165375-00;Name=Os03t0165375-00;Locus_id=Os03g0165375;Note=Similar to Chlorophyll a-b binding protein 2%2C chloroplastic.;Transcript_evidence=AJ234427 (DDBJ);ORF_evidence=P12331 (UniProt);TENOR=Os03t0165375-00
Chr03	irgsp1_rep	CDS	3521804	3522235	.	+	0	Parent=Os03t0165375-00
Chr03	irgsp1_rep	mRNA	3525115	3531350	.	-	.	ID=Os03t0165400-01;Name=Os03t0165400-01;Locus_id=Os03g0165400;CGSNL Gene Symbol=BGAL1;CGSNL Gene Name=BETA-GALACTOSIDASE 1;Oryzabase Gene Symbol Synonym(s)=OsBgal1%2C beta-gal%2C OsBGal1;Oryzabase Gene Name Synonym(s)=Beta-galactosidase 5%2C Lactase 5;Note=Similar to Relative to SR12 protein (Fragment).;Transcript_evidence=AK102192 (DDBJ%2C Best hit);ORF_evidence=Q10RB3 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: sugar binding (GO:0005529),Molecular Function: cation binding (GO:0043169);InterPro=D-galactoside/L-rhamnose binding SUEL lectin domain (IPR000922),Glycoside hydrolase%2C family 35 (IPR001944),Galactose-binding domain-like (IPR008979),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 35%2C conserved site (IPR019801);NIAS_FLcDNA=J033087B02;Oryzabase=8283;Expression=AK102192;TENOR=Os03t0165400-01;KEGG=Os03t0165400-01
Chr03	irgsp1_rep	five_prime_UTR	3531032	3531350	.	-	.	Parent=Os03t0165400-01
Chr03	irgsp1_rep	CDS	3530864	3531031	.	-	0	Parent=Os03t0165400-01
Chr03	irgsp1_rep	CDS	3530353	3530448	.	-	0	Parent=Os03t0165400-01
Chr03	irgsp1_rep	CDS	3530154	3530266	.	-	0	Parent=Os03t0165400-01
Chr03	irgsp1_rep	CDS	3529958	3530024	.	-	1	Parent=Os03t0165400-01
Chr03	irgsp1_rep	CDS	3529777	3529869	.	-	0	Parent=Os03t0165400-01
Chr03	irgsp1_rep	CDS	3529424	3529567	.	-	0	Parent=Os03t0165400-01
Chr03	irgsp1_rep	CDS	3528982	3529070	.	-	0	Parent=Os03t0165400-01
Chr03	irgsp1_rep	CDS	3528733	3528838	.	-	1	Parent=Os03t0165400-01
Chr03	irgsp1_rep	CDS	3528549	3528636	.	-	0	Parent=Os03t0165400-01
Chr03	irgsp1_rep	CDS	3528209	3528327	.	-	2	Parent=Os03t0165400-01
Chr03	irgsp1_rep	CDS	3527959	3528120	.	-	0	Parent=Os03t0165400-01
Chr03	irgsp1_rep	CDS	3527663	3527841	.	-	0	Parent=Os03t0165400-01
Chr03	irgsp1_rep	CDS	3527345	3527454	.	-	1	Parent=Os03t0165400-01
Chr03	irgsp1_rep	CDS	3527120	3527229	.	-	2	Parent=Os03t0165400-01
Chr03	irgsp1_rep	CDS	3526920	3527030	.	-	0	Parent=Os03t0165400-01
Chr03	irgsp1_rep	CDS	3526732	3526845	.	-	0	Parent=Os03t0165400-01
Chr03	irgsp1_rep	CDS	3526454	3526656	.	-	0	Parent=Os03t0165400-01
Chr03	irgsp1_rep	CDS	3525914	3526247	.	-	1	Parent=Os03t0165400-01
Chr03	irgsp1_rep	CDS	3525578	3525697	.	-	0	Parent=Os03t0165400-01
Chr03	irgsp1_rep	three_prime_UTR	3525115	3525577	.	-	.	Parent=Os03t0165400-01
Chr03	irgsp1_rep	mRNA	3525128	3527710	.	-	.	ID=Os03t0165400-02;Name=Os03t0165400-02;Locus_id=Os03g0165400;CGSNL Gene Symbol=BGAL1;CGSNL Gene Name=BETA-GALACTOSIDASE 1;Oryzabase Gene Symbol Synonym(s)=OsBgal1%2C beta-gal%2C OsBGal1;Oryzabase Gene Name Synonym(s)=Beta-galactosidase 5%2C Lactase 5;Note=Similar to Beta-galactosidase.;Transcript_evidence=AK060645 (DDBJ%2C Best hit);ORF_evidence=B7EST9 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: sugar binding (GO:0005529);InterPro=D-galactoside/L-rhamnose binding SUEL lectin domain (IPR000922),Glycoside hydrolase%2C family 35 (IPR001944),Galactose-binding domain-like (IPR008979);NIAS_FLcDNA=001-027-G03;Oryzabase=8283;Expression=AK060645;TENOR=Os03t0165400-02;KEGG=Os03t0165400-02
Chr03	irgsp1_rep	five_prime_UTR	3527710	3527710	.	-	.	Parent=Os03t0165400-02
Chr03	irgsp1_rep	CDS	3527663	3527709	.	-	0	Parent=Os03t0165400-02
Chr03	irgsp1_rep	CDS	3527345	3527454	.	-	1	Parent=Os03t0165400-02
Chr03	irgsp1_rep	CDS	3527120	3527229	.	-	2	Parent=Os03t0165400-02
Chr03	irgsp1_rep	CDS	3526920	3527030	.	-	0	Parent=Os03t0165400-02
Chr03	irgsp1_rep	CDS	3526732	3526845	.	-	0	Parent=Os03t0165400-02
Chr03	irgsp1_rep	CDS	3526454	3526656	.	-	0	Parent=Os03t0165400-02
Chr03	irgsp1_rep	CDS	3525914	3526247	.	-	1	Parent=Os03t0165400-02
Chr03	irgsp1_rep	CDS	3525578	3525697	.	-	0	Parent=Os03t0165400-02
Chr03	irgsp1_rep	three_prime_UTR	3525128	3525577	.	-	.	Parent=Os03t0165400-02
Chr03	irgsp1_rep	mRNA	3539613	3544723	.	-	.	ID=Os03t0165600-01;Name=Os03t0165600-01;Locus_id=Os03g0165600;CGSNL Gene Symbol=UBP14-2;CGSNL Gene Name=UBIQUITIN-SPECIFIC PROCESSING PROTEASE 14-2;Oryzabase Gene Symbol Synonym(s)=OsUBP14-2%2C OsUBP24%2C UBP24;Oryzabase Gene Name Synonym(s)=ubiquitin-specific processing protease 14-2%2C Ubiquitin-specific protease 24;Note=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 family protein.;Transcript_evidence=AK062304 (DDBJ%2C Best hit);ORF_evidence=Q10RB2 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Molecular Function: ubiquitin thiolesterase activity (GO:0004221);InterPro=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (IPR001394);NIAS_FLcDNA=001-101-A04;Oryzabase=22898;Expression=AK062304;TENOR=Os03t0165600-01;KEGG=Os03t0165600-01
Chr03	irgsp1_rep	five_prime_UTR	3544723	3544723	.	-	.	Parent=Os03t0165600-01
Chr03	irgsp1_rep	CDS	3544533	3544722	.	-	0	Parent=Os03t0165600-01
Chr03	irgsp1_rep	CDS	3544216	3544431	.	-	2	Parent=Os03t0165600-01
Chr03	irgsp1_rep	CDS	3543410	3543502	.	-	2	Parent=Os03t0165600-01
Chr03	irgsp1_rep	CDS	3542465	3542550	.	-	2	Parent=Os03t0165600-01
Chr03	irgsp1_rep	CDS	3542166	3542375	.	-	0	Parent=Os03t0165600-01
Chr03	irgsp1_rep	CDS	3541633	3541905	.	-	0	Parent=Os03t0165600-01
Chr03	irgsp1_rep	CDS	3541336	3541483	.	-	0	Parent=Os03t0165600-01
Chr03	irgsp1_rep	CDS	3540886	3541019	.	-	2	Parent=Os03t0165600-01
Chr03	irgsp1_rep	CDS	3540346	3540426	.	-	0	Parent=Os03t0165600-01
Chr03	irgsp1_rep	CDS	3540151	3540237	.	-	0	Parent=Os03t0165600-01
Chr03	irgsp1_rep	three_prime_UTR	3539613	3540150	.	-	.	Parent=Os03t0165600-01
Chr03	irgsp1_rep	mRNA	3551775	3554415	.	+	.	ID=Os03t0165800-01;Name=Os03t0165800-01;Locus_id=Os03g0165800;Note=Similar to Vesicle-associated membrane protein 725 (AtVAMP725).;Transcript_evidence=AK069165 (DDBJ%2C Best hit);ORF_evidence=E0A8M9 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: integral to membrane (GO:0016021);InterPro=Synaptobrevin (IPR001388),Longin (IPR010908),Longin-like (IPR011012);NIAS_FLcDNA=J023008N15;Expression=AK069165;TENOR=Os03t0165800-01;KEGG=Os03t0165800-01
Chr03	irgsp1_rep	five_prime_UTR	3551775	3551930	.	+	.	Parent=Os03t0165800-01
Chr03	irgsp1_rep	CDS	3551931	3552129	.	+	0	Parent=Os03t0165800-01
Chr03	irgsp1_rep	CDS	3553222	3553363	.	+	2	Parent=Os03t0165800-01
Chr03	irgsp1_rep	CDS	3553503	3553623	.	+	1	Parent=Os03t0165800-01
Chr03	irgsp1_rep	CDS	3553726	3553788	.	+	0	Parent=Os03t0165800-01
Chr03	irgsp1_rep	CDS	3553890	3554036	.	+	0	Parent=Os03t0165800-01
Chr03	irgsp1_rep	three_prime_UTR	3554037	3554415	.	+	.	Parent=Os03t0165800-01
Chr03	irgsp1_rep	mRNA	3555510	3558352	.	-	.	ID=Os03t0165900-01;Name=Os03t0165900-01;Locus_id=Os03g0165900;CGSNL Gene Symbol=SDI1;CGSNL Gene Name=SULPHUR-DEFICIENCY-INDUCIBLE 1;Oryzabase Gene Symbol Synonym(s)=OsSDI1;Oryzabase Gene Name Synonym(s)=sulphur-deficiency-inducible 1;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK102116 (DDBJ%2C Best hit);ORF_evidence=NP_001151272.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide TPR-1 (IPR001440),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J033084J17;Oryzabase=23472;Expression=AK102116;TENOR=Os03t0165900-01;KEGG=Os03t0165900-01
Chr03	irgsp1_rep	five_prime_UTR	3558265	3558352	.	-	.	Parent=Os03t0165900-01
Chr03	irgsp1_rep	CDS	3558151	3558264	.	-	0	Parent=Os03t0165900-01
Chr03	irgsp1_rep	CDS	3556670	3556882	.	-	0	Parent=Os03t0165900-01
Chr03	irgsp1_rep	CDS	3555821	3556441	.	-	0	Parent=Os03t0165900-01
Chr03	irgsp1_rep	three_prime_UTR	3555510	3555820	.	-	.	Parent=Os03t0165900-01
Chr03	irgsp1_rep	mRNA	3555490	3556832	.	-	.	ID=Os03t0165900-02;Name=Os03t0165900-02;Locus_id=Os03g0165900;CGSNL Gene Symbol=SDI1;CGSNL Gene Name=SULPHUR-DEFICIENCY-INDUCIBLE 1;Oryzabase Gene Symbol Synonym(s)=OsSDI1;Oryzabase Gene Name Synonym(s)=sulphur-deficiency-inducible 1;Note=Similar to pollenless3.;Transcript_evidence=AK063721 (DDBJ%2C Best hit);ORF_evidence=NP_001151272.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide TPR-1 (IPR001440),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=001-120-D01;Oryzabase=23472;Expression=AK063721;TENOR=Os03t0165900-02;KEGG=Os03t0165900-02
Chr03	irgsp1_rep	five_prime_UTR	3556832	3556832	.	-	.	Parent=Os03t0165900-02
Chr03	irgsp1_rep	CDS	3556670	3556831	.	-	0	Parent=Os03t0165900-02
Chr03	irgsp1_rep	CDS	3555821	3556441	.	-	0	Parent=Os03t0165900-02
Chr03	irgsp1_rep	three_prime_UTR	3555490	3555820	.	-	.	Parent=Os03t0165900-02
Chr03	irgsp1_rep	mRNA	3561596	3565365	.	-	.	ID=Os03t0166000-01;Name=Os03t0166000-01;Locus_id=Os03g0166000;CGSNL Gene Symbol=ALBA4;CGSNL Gene Name=ACETYLATION LOWERS BINDING AFFINITY 4;Oryzabase Gene Symbol Synonym(s)=OsAlba4%2C Alba4;Oryzabase Gene Name Synonym(s)=acetylation lowers binding affinity protein 4%2C acetylation lowers binding affinity 4%2C Alba family protein 4;Note=Alba%2C DNA/RNA-binding protein family protein.;Transcript_evidence=AK072498 (DDBJ%2C Best hit);ORF_evidence=NP_187359.2 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=DNA/RNA-binding protein Alba-like (IPR002775);NIAS_FLcDNA=J023127O11;Oryzabase=22404;Expression=AK072498;TENOR=Os03t0166000-01;KEGG=Os03t0166000-01
Chr03	irgsp1_rep	five_prime_UTR	3565242	3565365	.	-	.	Parent=Os03t0166000-01
Chr03	irgsp1_rep	CDS	3565116	3565241	.	-	0	Parent=Os03t0166000-01
Chr03	irgsp1_rep	CDS	3563548	3563628	.	-	0	Parent=Os03t0166000-01
Chr03	irgsp1_rep	CDS	3563375	3563463	.	-	0	Parent=Os03t0166000-01
Chr03	irgsp1_rep	CDS	3563212	3563286	.	-	1	Parent=Os03t0166000-01
Chr03	irgsp1_rep	CDS	3563006	3563112	.	-	1	Parent=Os03t0166000-01
Chr03	irgsp1_rep	CDS	3562694	3562927	.	-	2	Parent=Os03t0166000-01
Chr03	irgsp1_rep	CDS	3562500	3562580	.	-	2	Parent=Os03t0166000-01
Chr03	irgsp1_rep	CDS	3561858	3561994	.	-	2	Parent=Os03t0166000-01
Chr03	irgsp1_rep	three_prime_UTR	3561596	3561857	.	-	.	Parent=Os03t0166000-01
Chr03	irgsp1_rep	mRNA	3567001	3568783	.	-	.	ID=Os03t0166050-00;Name=Os03t0166050-00;Locus_id=Os03g0166050;Note=Non-protein coding transcript.;Transcript_evidence=BT084776 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0166050-00
Chr03	irgsp1_rep	exon	3568576	3568783	.	-	.	Parent=Os03t0166050-00
Chr03	irgsp1_rep	exon	3568338	3568503	.	-	.	Parent=Os03t0166050-00
Chr03	irgsp1_rep	exon	3567994	3568284	.	-	.	Parent=Os03t0166050-00
Chr03	irgsp1_rep	exon	3567739	3567872	.	-	.	Parent=Os03t0166050-00
Chr03	irgsp1_rep	exon	3567001	3567291	.	-	.	Parent=Os03t0166050-00
Chr03	irgsp1_rep	mRNA	3567173	3568821	.	+	.	ID=Os03t0166100-00;Name=Os03t0166100-00;Locus_id=Os03g0166100;Note=Similar to Prolyl 4-hydroxylase.;Transcript_evidence=ab initio prediction;ORF_evidence=B6TED5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706),Molecular Function: L-ascorbic acid binding (GO:0031418);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123),Prolyl 4-hydroxylase%2C alpha subunit (IPR006620);TENOR=Os03t0166100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	3567173	3567265	.	+	0	Parent=Os03t0166100-00
Chr03	irgsp1_rep	CDS	3567825	3567882	.	+	0	Parent=Os03t0166100-00
Chr03	irgsp1_rep	CDS	3567949	3568149	.	+	2	Parent=Os03t0166100-00
Chr03	irgsp1_rep	CDS	3568340	3568417	.	+	2	Parent=Os03t0166100-00
Chr03	irgsp1_rep	CDS	3568640	3568821	.	+	2	Parent=Os03t0166100-00
Chr03	irgsp1_rep	mRNA	3570194	3571828	.	+	.	ID=Os03t0166200-00;Name=Os03t0166200-00;Locus_id=Os03g0166200;Note=Similar to Oxidoreductase.;Transcript_evidence=BT041559 (DDBJ);ORF_evidence=B6TAV1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706),Molecular Function: L-ascorbic acid binding (GO:0031418);InterPro=Metridin-like ShK toxin (IPR003582),Oxoglutarate/iron-dependent oxygenase (IPR005123),Prolyl 4-hydroxylase%2C alpha subunit (IPR006620);TENOR=Os03t0166200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	3570194	3570259	.	+	0	Parent=Os03t0166200-00
Chr03	irgsp1_rep	CDS	3570361	3570468	.	+	0	Parent=Os03t0166200-00
Chr03	irgsp1_rep	CDS	3570877	3570934	.	+	0	Parent=Os03t0166200-00
Chr03	irgsp1_rep	CDS	3571052	3571227	.	+	2	Parent=Os03t0166200-00
Chr03	irgsp1_rep	CDS	3571298	3571828	.	+	0	Parent=Os03t0166200-00
Chr03	irgsp1_rep	mRNA	3599796	3602736	.	-	.	ID=Os03t0166600-00;Name=Os03t0166600-00;Locus_id=Os03g0166600;Note=Similar to ER glycerol-phosphate acyltransferase.;Transcript_evidence=EU956512 (DDBJ);ORF_evidence=XP_002520171.1 (RefSeq);TENOR=Os03t0166600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	3602728	3602736	.	-	.	Parent=Os03t0166600-00
Chr03	irgsp1_rep	CDS	3602065	3602727	.	-	0	Parent=Os03t0166600-00
Chr03	irgsp1_rep	CDS	3600217	3600309	.	-	0	Parent=Os03t0166600-00
Chr03	irgsp1_rep	three_prime_UTR	3599796	3600216	.	-	.	Parent=Os03t0166600-00
Chr03	irgsp1_rep	mRNA	3616611	3622202	.	+	.	ID=Os03t0166800-01;Name=Os03t0166800-01;Locus_id=Os03g0166800;RAP-DB Gene Symbol Synonym(s)=OsCCR4b;RAP-DB Gene Name Synonym(s)=Carbon catabolite repressor 4b;CGSNL Gene Symbol=CCR4B;CGSNL Gene Name=CARBON CATABOLITE REPRESSOR 4B;Oryzabase Gene Symbol Synonym(s)=OsCCR4b;Oryzabase Gene Name Synonym(s)=Carbon catabolite repressor 4b;Note=Carbon catabolite repressor 4%2C Exonuclease-endonuclease-phosphatase (EEP)%2C mRNA deadenylation;Transcript_evidence=AK100637;ORF_evidence=Q10R99;InterPro=MYND-like zinc finger%2C mRNA-binding (IPR031615),Endonuclease/exonuclease/phosphatase (IPR005135);NIAS_FLcDNA=J023110E13;Manual Curation=October 13%2C 2016;Literature_PMID=27714489;Oryzabase=21535;Expression=AK100637;TENOR=Os03t0166800-01;KEGG=Os03t0166800-01 (EC:3.1.-.-)
Chr03	irgsp1_rep	five_prime_UTR	3616611	3617027	.	+	.	Parent=Os03t0166800-01
Chr03	irgsp1_rep	CDS	3617028	3617185	.	+	0	Parent=Os03t0166800-01
Chr03	irgsp1_rep	CDS	3618162	3618924	.	+	1	Parent=Os03t0166800-01
Chr03	irgsp1_rep	CDS	3619286	3619372	.	+	0	Parent=Os03t0166800-01
Chr03	irgsp1_rep	CDS	3619476	3619559	.	+	0	Parent=Os03t0166800-01
Chr03	irgsp1_rep	CDS	3619641	3619727	.	+	0	Parent=Os03t0166800-01
Chr03	irgsp1_rep	CDS	3619821	3619907	.	+	0	Parent=Os03t0166800-01
Chr03	irgsp1_rep	CDS	3620452	3620505	.	+	0	Parent=Os03t0166800-01
Chr03	irgsp1_rep	CDS	3620593	3620684	.	+	0	Parent=Os03t0166800-01
Chr03	irgsp1_rep	CDS	3620777	3620891	.	+	1	Parent=Os03t0166800-01
Chr03	irgsp1_rep	CDS	3620976	3621126	.	+	0	Parent=Os03t0166800-01
Chr03	irgsp1_rep	CDS	3621223	3621368	.	+	2	Parent=Os03t0166800-01
Chr03	irgsp1_rep	three_prime_UTR	3621369	3621376	.	+	.	Parent=Os03t0166800-01
Chr03	irgsp1_rep	three_prime_UTR	3621732	3622202	.	+	.	Parent=Os03t0166800-01
Chr03	irgsp1_rep	mRNA	3618385	3622202	.	+	.	ID=Os03t0166800-02;Name=Os03t0166800-02;Locus_id=Os03g0166800;CGSNL Gene Symbol=CCR4B;CGSNL Gene Name=CARBON CATABOLITE REPRESSOR 4B;Oryzabase Gene Symbol Synonym(s)=OsCCR4b;Oryzabase Gene Name Synonym(s)=Carbon catabolite repressor 4b;Note=Similar to Endonuclease/Exonuclease/phosphatase family protein%2C expressed.;Transcript_evidence=AK101617 (DDBJ%2C Best hit);ORF_evidence=Q10R98 (UniProt);InterPro=Endonuclease/exonuclease/phosphatase (IPR005135);NIAS_FLcDNA=J033052H02;Oryzabase=21535;Expression=AK101617;TENOR=Os03t0166800-02;KEGG=Os03t0166800-02 (EC:3.1.-.-)
Chr03	irgsp1_rep	CDS	3618385	3618924	.	+	0	Parent=Os03t0166800-02
Chr03	irgsp1_rep	CDS	3619286	3619372	.	+	0	Parent=Os03t0166800-02
Chr03	irgsp1_rep	CDS	3619476	3619559	.	+	0	Parent=Os03t0166800-02
Chr03	irgsp1_rep	CDS	3619641	3619727	.	+	0	Parent=Os03t0166800-02
Chr03	irgsp1_rep	CDS	3619821	3619907	.	+	0	Parent=Os03t0166800-02
Chr03	irgsp1_rep	CDS	3620452	3620505	.	+	0	Parent=Os03t0166800-02
Chr03	irgsp1_rep	CDS	3620593	3620684	.	+	0	Parent=Os03t0166800-02
Chr03	irgsp1_rep	CDS	3620777	3620891	.	+	1	Parent=Os03t0166800-02
Chr03	irgsp1_rep	CDS	3620976	3621126	.	+	0	Parent=Os03t0166800-02
Chr03	irgsp1_rep	CDS	3621223	3621368	.	+	2	Parent=Os03t0166800-02
Chr03	irgsp1_rep	three_prime_UTR	3621369	3621376	.	+	.	Parent=Os03t0166800-02
Chr03	irgsp1_rep	three_prime_UTR	3621732	3622202	.	+	.	Parent=Os03t0166800-02
Chr03	irgsp1_rep	mRNA	3624851	3625983	.	-	.	ID=Os03t0166900-00;Name=Os03t0166900-00;Locus_id=Os03g0166900;Note=Hypothetical conserved gene.;Transcript_evidence=BT062221 (DDBJ);ORF_evidence=Q10R97 (UniProt);TENOR=Os03t0166900-00;KEGG=Os03t0166900-00
Chr03	irgsp1_rep	CDS	3625393	3625983	.	-	0	Parent=Os03t0166900-00
Chr03	irgsp1_rep	three_prime_UTR	3625261	3625392	.	-	.	Parent=Os03t0166900-00
Chr03	irgsp1_rep	three_prime_UTR	3624851	3625167	.	-	.	Parent=Os03t0166900-00
Chr03	irgsp1_rep	mRNA	3626392	3628578	.	+	.	ID=Os03t0167000-01;Name=Os03t0167000-01;Locus_id=Os03g0167000;Oryzabase Gene Symbol Synonym(s)=OsLTPG2%2C OsLTPg2%2C LTPL82;Oryzabase Gene Name Synonym(s)=GPI-anchored non-specific lipid transfer protein 2%2C type G nsLTP 2%2C type G non-specific lipid transfer protein 2;Note=Similar to Non-specific lipid-transfer protein.;Transcript_evidence=AK107307 (DDBJ%2C Best hit);ORF_evidence=Q10R96 (UniProt);GO=Biological Process: lipid transport (GO:0006869),Molecular Function: lipid binding (GO:0008289);InterPro=Plant lipid transfer protein/Par allergen (IPR000528),Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=002-126-D03;Oryzabase=13489;TENOR=Os03t0167000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	3626392	3626432	.	+	.	Parent=Os03t0167000-01
Chr03	irgsp1_rep	CDS	3626433	3626754	.	+	0	Parent=Os03t0167000-01
Chr03	irgsp1_rep	CDS	3627489	3627569	.	+	2	Parent=Os03t0167000-01
Chr03	irgsp1_rep	CDS	3628122	3628282	.	+	2	Parent=Os03t0167000-01
Chr03	irgsp1_rep	three_prime_UTR	3628283	3628578	.	+	.	Parent=Os03t0167000-01
Chr03	irgsp1_rep	mRNA	3631027	3631197	.	+	.	ID=Os03t0167100-00;Name=Os03t0167100-00;Locus_id=Os03g0167100;Note=Non-protein coding transcript.;Transcript_evidence=CT835143 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os03t0167100-00
Chr03	irgsp1_rep	exon	3631027	3631197	.	+	.	Parent=Os03t0167100-00
Chr03	irgsp1_rep	mRNA	3631183	3635525	.	-	.	ID=Os03t0167200-01;Name=Os03t0167200-01;Locus_id=Os03g0167200;Oryzabase Gene Symbol Synonym(s)=OsSTA91;Note=IQ calmodulin-binding region domain containing protein.;Transcript_evidence=AK066554 (DDBJ%2C Best hit);ORF_evidence=B9FBI6 (UniProt);NIAS_FLcDNA=J013073I08;Oryzabase=19387;Expression=AK066554;TENOR=Os03t0167200-01;KEGG=Os03t0167200-01
Chr03	irgsp1_rep	five_prime_UTR	3635223	3635525	.	-	.	Parent=Os03t0167200-01
Chr03	irgsp1_rep	five_prime_UTR	3634623	3634820	.	-	.	Parent=Os03t0167200-01
Chr03	irgsp1_rep	five_prime_UTR	3634180	3634277	.	-	.	Parent=Os03t0167200-01
Chr03	irgsp1_rep	CDS	3633734	3634179	.	-	0	Parent=Os03t0167200-01
Chr03	irgsp1_rep	CDS	3633522	3633636	.	-	1	Parent=Os03t0167200-01
Chr03	irgsp1_rep	CDS	3633175	3633240	.	-	0	Parent=Os03t0167200-01
Chr03	irgsp1_rep	CDS	3632995	3633083	.	-	0	Parent=Os03t0167200-01
Chr03	irgsp1_rep	CDS	3632813	3632903	.	-	1	Parent=Os03t0167200-01
Chr03	irgsp1_rep	CDS	3632579	3632725	.	-	0	Parent=Os03t0167200-01
Chr03	irgsp1_rep	CDS	3632357	3632449	.	-	0	Parent=Os03t0167200-01
Chr03	irgsp1_rep	CDS	3632165	3632266	.	-	0	Parent=Os03t0167200-01
Chr03	irgsp1_rep	CDS	3631275	3631958	.	-	0	Parent=Os03t0167200-01
Chr03	irgsp1_rep	three_prime_UTR	3631183	3631274	.	-	.	Parent=Os03t0167200-01
Chr03	irgsp1_rep	mRNA	3631277	3632275	.	+	.	ID=Os03t0167302-00;Name=Os03t0167302-00;Locus_id=Os03g0167302;Note=Hypothetical gene.;Transcript_evidence=EU947431 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0167302-00;KEGG=Os03t0167302-00
Chr03	irgsp1_rep	five_prime_UTR	3631277	3631277	.	+	.	Parent=Os03t0167302-00
Chr03	irgsp1_rep	CDS	3631278	3631760	.	+	0	Parent=Os03t0167302-00
Chr03	irgsp1_rep	three_prime_UTR	3631761	3631960	.	+	.	Parent=Os03t0167302-00
Chr03	irgsp1_rep	three_prime_UTR	3632085	3632275	.	+	.	Parent=Os03t0167302-00
Chr03	irgsp1_rep	mRNA	3638615	3642337	.	+	.	ID=Os03t0167400-00;Name=Os03t0167400-00;Locus_id=Os03g0167400;Note=Protein of unknown function DUF620 family protein.;Transcript_evidence=AK358357 (DDBJ);ORF_evidence=NP_001049081.1 (RefSeq);InterPro=Protein of unknown function DUF620 (IPR006873);TENOR=Os03t0167400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	3638615	3638681	.	+	.	Parent=Os03t0167400-00
Chr03	irgsp1_rep	CDS	3638682	3638912	.	+	0	Parent=Os03t0167400-00
Chr03	irgsp1_rep	CDS	3639017	3639361	.	+	0	Parent=Os03t0167400-00
Chr03	irgsp1_rep	CDS	3641805	3642329	.	+	0	Parent=Os03t0167400-00
Chr03	irgsp1_rep	three_prime_UTR	3642330	3642337	.	+	.	Parent=Os03t0167400-00
Chr03	irgsp1_rep	mRNA	3641803	3642315	.	-	.	ID=Os03t0167450-00;Name=Os03t0167450-00;Locus_id=Os03g0167450;Note=Hypothetical protein.;Transcript_evidence=BT017174 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0167450-00
Chr03	irgsp1_rep	five_prime_UTR	3642315	3642315	.	-	.	Parent=Os03t0167450-00
Chr03	irgsp1_rep	CDS	3641803	3642314	.	-	0	Parent=Os03t0167450-00
Chr03	irgsp1_rep	mRNA	3647017	3651575	.	+	.	ID=Os03t0167500-01;Name=Os03t0167500-01;Locus_id=Os03g0167500;Oryzabase Gene Symbol Synonym(s)=OsRMR3%2C OsRMR1%2C RMR1;Oryzabase Gene Name Synonym(s)=receptor-like membrane Ring-H2 3%2C receptor homology region-transmembrane domain-RING-H2 (RMR) protein 1%2C ReMembR-H2 Protein 1;Note=Splicing isoform of OsRMR1;Transcript_evidence=AK070468;ORF_evidence=Q10R93-2;GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=PA domain (IPR003137),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841);NIAS_FLcDNA=J023052D05;Manual Curation=May 6%2C 2016;Oryzabase=15535;Expression=AK070468;TENOR=Os03t0167500-01;KEGG=Os03t0167500-01
Chr03	irgsp1_rep	five_prime_UTR	3647017	3647230	.	+	.	Parent=Os03t0167500-01
Chr03	irgsp1_rep	five_prime_UTR	3648240	3648418	.	+	.	Parent=Os03t0167500-01
Chr03	irgsp1_rep	CDS	3648419	3648557	.	+	0	Parent=Os03t0167500-01
Chr03	irgsp1_rep	CDS	3648958	3649182	.	+	2	Parent=Os03t0167500-01
Chr03	irgsp1_rep	CDS	3649598	3650002	.	+	2	Parent=Os03t0167500-01
Chr03	irgsp1_rep	CDS	3650499	3650913	.	+	2	Parent=Os03t0167500-01
Chr03	irgsp1_rep	CDS	3651010	3651331	.	+	1	Parent=Os03t0167500-01
Chr03	irgsp1_rep	three_prime_UTR	3651332	3651575	.	+	.	Parent=Os03t0167500-01
Chr03	irgsp1_rep	mRNA	3646873	3651577	.	+	.	ID=Os03t0167500-02;Name=Os03t0167500-02;Locus_id=Os03g0167500;RAP-DB Gene Symbol Synonym(s)=OsRMR3%2C OsRMR1%2C RMR1;RAP-DB Gene Name Synonym(s)=receptor-like membrane Ring-H2 3%2C receptor homology region-transmembrane domain-RING-H2 (RMR) protein 1%2C ReMembR-H2 Protein 1;Oryzabase Gene Symbol Synonym(s)=OsRMR3%2C OsRMR1%2C RMR1;Oryzabase Gene Name Synonym(s)=receptor-like membrane Ring-H2 3%2C receptor homology region-transmembrane domain-RING-H2 (RMR) protein 1%2C ReMembR-H2 Protein 1;Note=Receptor-like membrane Ring-H2 (RMR) protein%2C Sorting receptor in transporting vicilin-like storage proteins;Transcript_evidence=Inferred from literature;ORF_evidence=Q10R93;GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=PA domain (IPR003137),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841);Manual Curation=May 6%2C 2016;Literature_PMID=21493745;Oryzabase=15535;TENOR=Os03t0167500-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	3646873	3647230	.	+	.	Parent=Os03t0167500-02
Chr03	irgsp1_rep	five_prime_UTR	3648240	3648418	.	+	.	Parent=Os03t0167500-02
Chr03	irgsp1_rep	CDS	3648419	3648557	.	+	0	Parent=Os03t0167500-02
Chr03	irgsp1_rep	CDS	3648958	3649182	.	+	2	Parent=Os03t0167500-02
Chr03	irgsp1_rep	CDS	3649598	3650002	.	+	2	Parent=Os03t0167500-02
Chr03	irgsp1_rep	CDS	3650499	3651331	.	+	2	Parent=Os03t0167500-02
Chr03	irgsp1_rep	three_prime_UTR	3651332	3651577	.	+	.	Parent=Os03t0167500-02
Chr03	irgsp1_rep	mRNA	3647830	3649876	.	-	.	ID=Os03t0167550-01;Name=Os03t0167550-01;Locus_id=Os03g0167550;Note=Hypothetical gene.;Transcript_evidence=AK288716 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090062F02;TENOR=Os03t0167550-01;KEGG=Os03t0167550-01
Chr03	irgsp1_rep	five_prime_UTR	3648478	3649876	.	-	.	Parent=Os03t0167550-01
Chr03	irgsp1_rep	CDS	3648199	3648477	.	-	0	Parent=Os03t0167550-01
Chr03	irgsp1_rep	three_prime_UTR	3647830	3648198	.	-	.	Parent=Os03t0167550-01
Chr03	irgsp1_rep	mRNA	3653709	3657069	.	+	.	ID=Os03t0167600-01;Name=Os03t0167600-01;Locus_id=Os03g0167600;Oryzabase Gene Symbol Synonym(s)=OsMS2%2C MS2%2C OsDPW%2C DPW%2C DPW1%2C OsDPW1;Oryzabase Gene Name Synonym(s)=MALE STERILITY 2%2C male sterility protein 2%2C defective pollen wall;Note=Similar to Male sterility protein 2.;Transcript_evidence=AK121254 (DDBJ%2C Best hit);ORF_evidence=B1PAT2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620);InterPro=Male sterility (IPR004262),Male sterility%2C NAD-binding (IPR013120),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023102A19;Oryzabase=13558;Expression=AK121254;TENOR=Os03t0167600-01;KEGG=Os03t0167600-01
Chr03	irgsp1_rep	five_prime_UTR	3653709	3654076	.	+	.	Parent=Os03t0167600-01
Chr03	irgsp1_rep	CDS	3654077	3654392	.	+	0	Parent=Os03t0167600-01
Chr03	irgsp1_rep	CDS	3654486	3654589	.	+	2	Parent=Os03t0167600-01
Chr03	irgsp1_rep	CDS	3654700	3654899	.	+	0	Parent=Os03t0167600-01
Chr03	irgsp1_rep	CDS	3655017	3655117	.	+	1	Parent=Os03t0167600-01
Chr03	irgsp1_rep	CDS	3655236	3655449	.	+	2	Parent=Os03t0167600-01
Chr03	irgsp1_rep	CDS	3655563	3655724	.	+	1	Parent=Os03t0167600-01
Chr03	irgsp1_rep	CDS	3655837	3655918	.	+	1	Parent=Os03t0167600-01
Chr03	irgsp1_rep	CDS	3655998	3656425	.	+	0	Parent=Os03t0167600-01
Chr03	irgsp1_rep	CDS	3656708	3656927	.	+	1	Parent=Os03t0167600-01
Chr03	irgsp1_rep	three_prime_UTR	3656928	3657069	.	+	.	Parent=Os03t0167600-01
Chr03	irgsp1_rep	mRNA	3654073	3656422	.	-	.	ID=Os03t0167650-00;Name=Os03t0167650-00;Locus_id=Os03g0167650;Note=Hypothetical gene.;Transcript_evidence=BT086400 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0167650-00
Chr03	irgsp1_rep	five_prime_UTR	3655997	3656422	.	-	.	Parent=Os03t0167650-00
Chr03	irgsp1_rep	five_prime_UTR	3655835	3655917	.	-	.	Parent=Os03t0167650-00
Chr03	irgsp1_rep	five_prime_UTR	3655677	3655722	.	-	.	Parent=Os03t0167650-00
Chr03	irgsp1_rep	CDS	3655561	3655676	.	-	0	Parent=Os03t0167650-00
Chr03	irgsp1_rep	CDS	3655233	3655447	.	-	1	Parent=Os03t0167650-00
Chr03	irgsp1_rep	CDS	3655036	3655114	.	-	2	Parent=Os03t0167650-00
Chr03	irgsp1_rep	CDS	3654866	3654917	.	-	1	Parent=Os03t0167650-00
Chr03	irgsp1_rep	three_prime_UTR	3654709	3654865	.	-	.	Parent=Os03t0167650-00
Chr03	irgsp1_rep	three_prime_UTR	3654073	3654595	.	-	.	Parent=Os03t0167650-00
Chr03	irgsp1_rep	mRNA	3657127	3661833	.	-	.	ID=Os03t0167700-01;Name=Os03t0167700-01;Locus_id=Os03g0167700;Oryzabase Gene Symbol Synonym(s)=OsPP44%2C PP44;Oryzabase Gene Name Synonym(s)=Protein phosphatase 44;Note=Similar to Serine/threonine protein phosphatase PP2A-3 catalytic subunit (EC 3.1.3.16).;Transcript_evidence=AK069884 (DDBJ%2C Best hit),AK072010 (DDBJ%2C Best hit);ORF_evidence=A5H7F0 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Metallophosphoesterase domain (IPR004843),Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (IPR006186);NIAS_FLcDNA=J023038E01,J013102E23;Oryzabase=18636;Expression=AK069884;TENOR=Os03t0167700-01;KEGG=Os03t0167700-01 (EC:3.1.3.16)
Chr03	irgsp1_rep	five_prime_UTR	3661683	3661833	.	-	.	Parent=Os03t0167700-01
Chr03	irgsp1_rep	CDS	3661587	3661682	.	-	0	Parent=Os03t0167700-01
Chr03	irgsp1_rep	CDS	3660916	3660972	.	-	0	Parent=Os03t0167700-01
Chr03	irgsp1_rep	CDS	3660367	3660450	.	-	0	Parent=Os03t0167700-01
Chr03	irgsp1_rep	CDS	3660197	3660268	.	-	0	Parent=Os03t0167700-01
Chr03	irgsp1_rep	CDS	3659921	3659992	.	-	0	Parent=Os03t0167700-01
Chr03	irgsp1_rep	CDS	3659685	3659725	.	-	0	Parent=Os03t0167700-01
Chr03	irgsp1_rep	CDS	3659165	3659231	.	-	1	Parent=Os03t0167700-01
Chr03	irgsp1_rep	CDS	3658416	3658607	.	-	0	Parent=Os03t0167700-01
Chr03	irgsp1_rep	CDS	3658250	3658339	.	-	0	Parent=Os03t0167700-01
Chr03	irgsp1_rep	CDS	3658061	3658168	.	-	0	Parent=Os03t0167700-01
Chr03	irgsp1_rep	CDS	3657746	3657811	.	-	0	Parent=Os03t0167700-01
Chr03	irgsp1_rep	three_prime_UTR	3657127	3657745	.	-	.	Parent=Os03t0167700-01
Chr03	irgsp1_rep	mRNA	3657385	3659234	.	+	.	ID=Os03t0167750-00;Name=Os03t0167750-00;Locus_id=Os03g0167750;Note=Hypothetical gene.;Transcript_evidence=BT018461 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0167750-00;KEGG=Os03t0167750-00
Chr03	irgsp1_rep	five_prime_UTR	3657385	3657475	.	+	.	Parent=Os03t0167750-00
Chr03	irgsp1_rep	CDS	3657476	3657804	.	+	0	Parent=Os03t0167750-00
Chr03	irgsp1_rep	CDS	3658054	3658174	.	+	1	Parent=Os03t0167750-00
Chr03	irgsp1_rep	CDS	3658255	3658275	.	+	0	Parent=Os03t0167750-00
Chr03	irgsp1_rep	three_prime_UTR	3658276	3658343	.	+	.	Parent=Os03t0167750-00
Chr03	irgsp1_rep	three_prime_UTR	3658420	3658605	.	+	.	Parent=Os03t0167750-00
Chr03	irgsp1_rep	three_prime_UTR	3659163	3659234	.	+	.	Parent=Os03t0167750-00
Chr03	irgsp1_rep	mRNA	3661520	3661905	.	+	.	ID=Os03t0167775-00;Name=Os03t0167775-00;Locus_id=Os03g0167775;Note=Hypothetical protein.;Transcript_evidence=EU950588 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0167775-00
Chr03	irgsp1_rep	five_prime_UTR	3661520	3661520	.	+	.	Parent=Os03t0167775-00
Chr03	irgsp1_rep	CDS	3661521	3661796	.	+	0	Parent=Os03t0167775-00
Chr03	irgsp1_rep	three_prime_UTR	3661797	3661905	.	+	.	Parent=Os03t0167775-00
Chr03	irgsp1_rep	mRNA	3664640	3669277	.	+	.	ID=Os03t0167800-01;Name=Os03t0167800-01;Locus_id=Os03g0167800;Oryzabase Gene Symbol Synonym(s)=OsFbox129%2C Os_F0178;Oryzabase Gene Name Synonym(s)=F-box protein 129;Note=Kelch-type beta propeller domain containing protein.;Transcript_evidence=AK071501 (DDBJ%2C Best hit);ORF_evidence=B6U1Z3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Kelch repeat type 1 (IPR006652),Galactose oxidase%2C beta-propeller (IPR015916),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023093H18;Oryzabase=16921;Expression=AK071501;TENOR=Os03t0167800-01;KEGG=Os03t0167800-01
Chr03	irgsp1_rep	five_prime_UTR	3664640	3664936	.	+	.	Parent=Os03t0167800-01
Chr03	irgsp1_rep	CDS	3664937	3665002	.	+	0	Parent=Os03t0167800-01
Chr03	irgsp1_rep	CDS	3667956	3669206	.	+	0	Parent=Os03t0167800-01
Chr03	irgsp1_rep	three_prime_UTR	3669207	3669277	.	+	.	Parent=Os03t0167800-01
Chr03	irgsp1_rep	mRNA	3664712	3669746	.	+	.	ID=Os03t0167800-02;Name=Os03t0167800-02;Locus_id=Os03g0167800;Oryzabase Gene Symbol Synonym(s)=OsFbox129%2C Os_F0178;Oryzabase Gene Name Synonym(s)=F-box protein 129;Note=Kelch-type beta propeller domain containing protein.;Transcript_evidence=AK121310 (DDBJ%2C Best hit);ORF_evidence=B6U1Z3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Kelch repeat type 1 (IPR006652),Galactose oxidase%2C beta-propeller (IPR015916),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023112E08;Oryzabase=16921;Expression=AK121310;TENOR=Os03t0167800-02;KEGG=Os03t0167800-02
Chr03	irgsp1_rep	five_prime_UTR	3664712	3664936	.	+	.	Parent=Os03t0167800-02
Chr03	irgsp1_rep	CDS	3664937	3665002	.	+	0	Parent=Os03t0167800-02
Chr03	irgsp1_rep	CDS	3667956	3669206	.	+	0	Parent=Os03t0167800-02
Chr03	irgsp1_rep	three_prime_UTR	3669207	3669746	.	+	.	Parent=Os03t0167800-02
Chr03	irgsp1_rep	mRNA	3674285	3678314	.	+	.	ID=Os03t0168000-01;Name=Os03t0168000-01;Locus_id=Os03g0168000;Note=Major facilitator superfamily%2C general substrate transporter domain containing protein.;Transcript_evidence=AK072898 (DDBJ%2C Best hit);ORF_evidence=A2XCY5 (UniProt);InterPro=Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J023144O03;Expression=AK072898;TENOR=Os03t0168000-01;KEGG=Os03t0168000-01
Chr03	irgsp1_rep	five_prime_UTR	3674285	3674342	.	+	.	Parent=Os03t0168000-01
Chr03	irgsp1_rep	five_prime_UTR	3674765	3674840	.	+	.	Parent=Os03t0168000-01
Chr03	irgsp1_rep	CDS	3674841	3675004	.	+	0	Parent=Os03t0168000-01
Chr03	irgsp1_rep	CDS	3675157	3675226	.	+	1	Parent=Os03t0168000-01
Chr03	irgsp1_rep	CDS	3675327	3675523	.	+	0	Parent=Os03t0168000-01
Chr03	irgsp1_rep	CDS	3675622	3675697	.	+	1	Parent=Os03t0168000-01
Chr03	irgsp1_rep	CDS	3676007	3676090	.	+	0	Parent=Os03t0168000-01
Chr03	irgsp1_rep	CDS	3676460	3676539	.	+	0	Parent=Os03t0168000-01
Chr03	irgsp1_rep	CDS	3676635	3676761	.	+	1	Parent=Os03t0168000-01
Chr03	irgsp1_rep	CDS	3676940	3676999	.	+	0	Parent=Os03t0168000-01
Chr03	irgsp1_rep	CDS	3677087	3677137	.	+	0	Parent=Os03t0168000-01
Chr03	irgsp1_rep	CDS	3677226	3677384	.	+	0	Parent=Os03t0168000-01
Chr03	irgsp1_rep	CDS	3677509	3677641	.	+	0	Parent=Os03t0168000-01
Chr03	irgsp1_rep	CDS	3677758	3677930	.	+	2	Parent=Os03t0168000-01
Chr03	irgsp1_rep	three_prime_UTR	3677931	3678314	.	+	.	Parent=Os03t0168000-01
Chr03	irgsp1_rep	mRNA	3678292	3679969	.	-	.	ID=Os03t0168100-01;Name=Os03t0168100-01;Locus_id=Os03g0168100;CGSNL Gene Symbol=LEA16;CGSNL Gene Name=LATE EMBRYOGENESIS ABUNDANT PROTEIN 16;Oryzabase Gene Symbol Synonym(s)=OsLEA16;Oryzabase Gene Name Synonym(s)=late embryogenesis abundant protein 16;Note=Late embryogenesis abundant protein repeat containing protein.;Transcript_evidence=AK121575 (DDBJ%2C Best hit);ORF_evidence=NP_001150012.1 (RefSeq);InterPro=Late embryogenesis abundant protein%2C LEA-3 (IPR004238);NIAS_FLcDNA=J033036H02;Oryzabase=10183;Expression=AK121575;TENOR=Os03t0168100-01;KEGG=Os03t0168100-01
Chr03	irgsp1_rep	five_prime_UTR	3679882	3679969	.	-	.	Parent=Os03t0168100-01
Chr03	irgsp1_rep	CDS	3679614	3679881	.	-	0	Parent=Os03t0168100-01
Chr03	irgsp1_rep	CDS	3678540	3679474	.	-	2	Parent=Os03t0168100-01
Chr03	irgsp1_rep	three_prime_UTR	3678292	3678539	.	-	.	Parent=Os03t0168100-01
Chr03	irgsp1_rep	mRNA	3681100	3683235	.	+	.	ID=Os03t0168200-01;Name=Os03t0168200-01;Locus_id=Os03g0168200;Note=Similar to F16A14.21.;Transcript_evidence=AK099530 (DDBJ%2C Best hit);ORF_evidence=Q9LMF9 (UniProt);InterPro=Protein of unknown function DUF3110 (IPR021503);NIAS_FLcDNA=J013031J20;Expression=AK099530;TENOR=Os03t0168200-01;KEGG=Os03t0168200-01
Chr03	irgsp1_rep	five_prime_UTR	3681100	3681211	.	+	.	Parent=Os03t0168200-01
Chr03	irgsp1_rep	CDS	3681212	3681569	.	+	0	Parent=Os03t0168200-01
Chr03	irgsp1_rep	CDS	3682225	3682324	.	+	2	Parent=Os03t0168200-01
Chr03	irgsp1_rep	CDS	3682417	3682537	.	+	1	Parent=Os03t0168200-01
Chr03	irgsp1_rep	CDS	3682681	3682776	.	+	0	Parent=Os03t0168200-01
Chr03	irgsp1_rep	CDS	3682882	3683004	.	+	0	Parent=Os03t0168200-01
Chr03	irgsp1_rep	three_prime_UTR	3683005	3683235	.	+	.	Parent=Os03t0168200-01
Chr03	irgsp1_rep	mRNA	3683172	3685295	.	-	.	ID=Os03t0168300-01;Name=Os03t0168300-01;Locus_id=Os03g0168300;Note=Protein of unknown function DUF1997 domain containing protein.;Transcript_evidence=AK069941 (DDBJ%2C Best hit);ORF_evidence=B8APA2 (UniProt);InterPro=Protein of unknown function DUF1997 (IPR018971);NIAS_FLcDNA=J023037E14;Expression=AK069941;TENOR=Os03t0168300-01;KEGG=Os03t0168300-01
Chr03	irgsp1_rep	five_prime_UTR	3685241	3685295	.	-	.	Parent=Os03t0168300-01
Chr03	irgsp1_rep	CDS	3685195	3685240	.	-	0	Parent=Os03t0168300-01
Chr03	irgsp1_rep	CDS	3684839	3685092	.	-	2	Parent=Os03t0168300-01
Chr03	irgsp1_rep	CDS	3684650	3684736	.	-	0	Parent=Os03t0168300-01
Chr03	irgsp1_rep	CDS	3684280	3684429	.	-	0	Parent=Os03t0168300-01
Chr03	irgsp1_rep	CDS	3683983	3684177	.	-	0	Parent=Os03t0168300-01
Chr03	irgsp1_rep	CDS	3683459	3683569	.	-	0	Parent=Os03t0168300-01
Chr03	irgsp1_rep	three_prime_UTR	3683172	3683458	.	-	.	Parent=Os03t0168300-01
Chr03	irgsp1_rep	mRNA	3692500	3697299	.	+	.	ID=Os03t0168400-01;Name=Os03t0168400-01;Locus_id=Os03g0168400;CGSNL Gene Symbol=FLO10;CGSNL Gene Name=FLOURY ENDOSPERM 10;Oryzabase Gene Symbol Synonym(s)=OsFLO10;Oryzabase Gene Name Synonym(s)=floury endosperm10;Note=Hypothetical conserved gene.;Transcript_evidence=AK287426 (DDBJ%2C Best hit);ORF_evidence=NP_001049090.1 (RefSeq);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J043008J01;Oryzabase=23127;TENOR=Os03t0168400-01;KEGG=Os03t0168400-01
Chr03	irgsp1_rep	five_prime_UTR	3692500	3692500	.	+	.	Parent=Os03t0168400-01
Chr03	irgsp1_rep	CDS	3692501	3693919	.	+	0	Parent=Os03t0168400-01
Chr03	irgsp1_rep	three_prime_UTR	3693920	3694108	.	+	.	Parent=Os03t0168400-01
Chr03	irgsp1_rep	three_prime_UTR	3694186	3694255	.	+	.	Parent=Os03t0168400-01
Chr03	irgsp1_rep	three_prime_UTR	3694996	3695167	.	+	.	Parent=Os03t0168400-01
Chr03	irgsp1_rep	three_prime_UTR	3695262	3695311	.	+	.	Parent=Os03t0168400-01
Chr03	irgsp1_rep	three_prime_UTR	3696406	3696738	.	+	.	Parent=Os03t0168400-01
Chr03	irgsp1_rep	three_prime_UTR	3696833	3697299	.	+	.	Parent=Os03t0168400-01
Chr03	irgsp1_rep	mRNA	3690005	3693916	.	+	.	ID=Os03t0168400-02;Name=Os03t0168400-02;Locus_id=Os03g0168400;RAP-DB Gene Symbol Synonym(s)=FLO10;RAP-DB Gene Name Synonym(s)=FLOURY ENDOSPERM10;CGSNL Gene Symbol=FLO10;CGSNL Gene Name=FLOURY ENDOSPERM 10;Oryzabase Gene Symbol Synonym(s)=OsFLO10;Oryzabase Gene Name Synonym(s)=floury endosperm10;Note=P-type pentatricopeptide repeat (PPR) protein%2C Maintenance of mitochondrial function and endosperm development%2C Trans-splicing of the mitochondrial nad1 intron1;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical domain superfamily (IPR011990),Pentatricopeptide repeat (IPR002885);Manual Curation=May 16%2C 2019;Literature_PMID=30916395;Oryzabase=23127;Subcellular location=mitochondrion (GO:0005739)
Chr03	irgsp1_rep	CDS	3690005	3690057	.	+	0	Parent=Os03t0168400-02
Chr03	irgsp1_rep	CDS	3690163	3693916	.	+	1	Parent=Os03t0168400-02
Chr03	irgsp1_rep	mRNA	3694742	3696580	.	-	.	ID=Os03t0168500-00;Name=Os03t0168500-00;Locus_id=Os03g0168500;Oryzabase Gene Symbol Synonym(s)=OsEnS-44%2C EnS-44%2C OsEnS44%2C EnS44;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 44;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8S7U8 (UniProt);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Thioredoxin (IPR005746),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766);Oryzabase=18373;TENOR=Os03t0168500-00;KEGG=Os03t0168500-00
Chr03	irgsp1_rep	CDS	3696383	3696580	.	-	0	Parent=Os03t0168500-00
Chr03	irgsp1_rep	CDS	3695257	3695433	.	-	0	Parent=Os03t0168500-00
Chr03	irgsp1_rep	CDS	3694742	3694900	.	-	0	Parent=Os03t0168500-00
Chr03	irgsp1_rep	mRNA	3700039	3701677	.	-	.	ID=Os03t0168550-00;Name=Os03t0168550-00;Locus_id=Os03g0168550;Note=Similar to predicted protein.;Transcript_evidence=BT054912 (DDBJ);ORF_evidence=NP_197034.2 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os03t0168550-00;KEGG=Os03t0168550-00
Chr03	irgsp1_rep	five_prime_UTR	3701677	3701677	.	-	.	Parent=Os03t0168550-00
Chr03	irgsp1_rep	CDS	3700039	3701676	.	-	0	Parent=Os03t0168550-00
Chr03	irgsp1_rep	mRNA	3702125	3704085	.	-	.	ID=Os03t0168600-01;Name=Os03t0168600-01;Locus_id=Os03g0168600;RAP-DB Gene Symbol Synonym(s)=CYP704B2%2C OsCYP704B2;RAP-DB Gene Name Synonym(s)=CYTOCHROME P450 HYDROXYLASE 704B2%2C CytoChrome P450 704B2;CGSNL Gene Symbol=CYP704B2;CGSNL Gene Name=CYTOCHROME P450 HYDROXYLASE 704B2;Oryzabase Gene Symbol Synonym(s)=OsCYP704B2;Oryzabase Gene Name Synonym(s)=CytoChrome P450 704B2;Note=CytoChrome P450 protein%2C Anther cutin biosynthesis and pollen exine formation;Transcript_evidence=NM_001055627 (Genbank);ORF_evidence=Q8S7V0 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);Manual Curation=February 16%2C 2010;Literature_PMID=20086189;Oryzabase=10297;TENOR=Os03t0168600-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	3704055	3704085	.	-	.	Parent=Os03t0168600-01
Chr03	irgsp1_rep	CDS	3703716	3704054	.	-	0	Parent=Os03t0168600-01
Chr03	irgsp1_rep	CDS	3703412	3703627	.	-	0	Parent=Os03t0168600-01
Chr03	irgsp1_rep	CDS	3703024	3703320	.	-	0	Parent=Os03t0168600-01
Chr03	irgsp1_rep	CDS	3702125	3702907	.	-	0	Parent=Os03t0168600-01
Chr03	irgsp1_rep	mRNA	3702511	3703608	.	+	.	ID=Os03t0168650-00;Name=Os03t0168650-00;Locus_id=Os03g0168650;Note=Hypothetical protein.;Transcript_evidence=BT065154 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0168650-00
Chr03	irgsp1_rep	five_prime_UTR	3702511	3702511	.	+	.	Parent=Os03t0168650-00
Chr03	irgsp1_rep	CDS	3702512	3702646	.	+	0	Parent=Os03t0168650-00
Chr03	irgsp1_rep	CDS	3702701	3702961	.	+	0	Parent=Os03t0168650-00
Chr03	irgsp1_rep	three_prime_UTR	3702962	3703298	.	+	.	Parent=Os03t0168650-00
Chr03	irgsp1_rep	three_prime_UTR	3703404	3703608	.	+	.	Parent=Os03t0168650-00
Chr03	irgsp1_rep	mRNA	3705167	3706777	.	-	.	ID=Os03t0168700-00;Name=Os03t0168700-00;Locus_id=Os03g0168700;Oryzabase Gene Symbol Synonym(s)=OsSET14%2C SDG739;Oryzabase Gene Name Synonym(s)=SET protein 14;Note=SET domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001049093.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=SET domain (IPR001214),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026);Oryzabase=13380;TENOR=Os03t0168700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	3705167	3706777	.	-	0	Parent=Os03t0168700-00
Chr03	irgsp1_rep	mRNA	3707189	3708497	.	+	.	ID=Os03t0168800-00;Name=Os03t0168800-00;Locus_id=Os03g0168800;Note=Hypothetical conserved gene.;Transcript_evidence=AK288126 (DDBJ%2C Secondary hit);ORF_evidence=NP_001044440.2 (RefSeq);TENOR=Os03t0168800-00;KEGG=Os03t0168800-00
Chr03	irgsp1_rep	five_prime_UTR	3707189	3707361	.	+	.	Parent=Os03t0168800-00
Chr03	irgsp1_rep	CDS	3707362	3707544	.	+	0	Parent=Os03t0168800-00
Chr03	irgsp1_rep	CDS	3707602	3708027	.	+	0	Parent=Os03t0168800-00
Chr03	irgsp1_rep	three_prime_UTR	3708028	3708497	.	+	.	Parent=Os03t0168800-00
Chr03	irgsp1_rep	mRNA	3711147	3713253	.	+	.	ID=Os03t0168900-01;Name=Os03t0168900-01;Locus_id=Os03g0168900;Note=Ribosomal protein L32p domain containing protein.;Transcript_evidence=AK121913 (DDBJ%2C Best hit);ORF_evidence=NP_001148673.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: large ribosomal subunit (GO:0015934),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L32p (IPR002677),Ribosomal protein%2C zinc-binding domain (IPR011332);NIAS_FLcDNA=J033106A15;Expression=AK121913;TENOR=Os03t0168900-01;KEGG=Os03t0168900-01
Chr03	irgsp1_rep	five_prime_UTR	3711147	3711169	.	+	.	Parent=Os03t0168900-01
Chr03	irgsp1_rep	CDS	3711170	3711358	.	+	0	Parent=Os03t0168900-01
Chr03	irgsp1_rep	CDS	3712283	3712356	.	+	0	Parent=Os03t0168900-01
Chr03	irgsp1_rep	CDS	3712881	3712959	.	+	1	Parent=Os03t0168900-01
Chr03	irgsp1_rep	three_prime_UTR	3712960	3713253	.	+	.	Parent=Os03t0168900-01
Chr03	irgsp1_rep	mRNA	3717384	3721105	.	-	.	ID=Os03t0169000-01;Name=Os03t0169000-01;Locus_id=Os03g0169000;Note=Similar to F16A14.24.;Transcript_evidence=AK107189 (DDBJ%2C Best hit);ORF_evidence=Q9LMF6 (UniProt);InterPro=GDP-fucose protein O-fucosyltransferase (IPR019378),O-fucosyltransferase%2C plant (IPR024709);NIAS_FLcDNA=002-124-H12;TENOR=Os03t0169000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	3720936	3721105	.	-	.	Parent=Os03t0169000-01
Chr03	irgsp1_rep	CDS	3720773	3720935	.	-	0	Parent=Os03t0169000-01
Chr03	irgsp1_rep	CDS	3720299	3720366	.	-	2	Parent=Os03t0169000-01
Chr03	irgsp1_rep	CDS	3720110	3720198	.	-	0	Parent=Os03t0169000-01
Chr03	irgsp1_rep	CDS	3719861	3720023	.	-	1	Parent=Os03t0169000-01
Chr03	irgsp1_rep	CDS	3719498	3719787	.	-	0	Parent=Os03t0169000-01
Chr03	irgsp1_rep	CDS	3718478	3718682	.	-	1	Parent=Os03t0169000-01
Chr03	irgsp1_rep	CDS	3718102	3718259	.	-	0	Parent=Os03t0169000-01
Chr03	irgsp1_rep	CDS	3717694	3717958	.	-	1	Parent=Os03t0169000-01
Chr03	irgsp1_rep	three_prime_UTR	3717384	3717693	.	-	.	Parent=Os03t0169000-01
Chr03	irgsp1_rep	mRNA	3713492	3718519	.	-	.	ID=Os03t0169000-02;Name=Os03t0169000-02;Locus_id=Os03g0169000;Note=Similar to predicted protein.;Transcript_evidence=AK064675 (DDBJ%2C Best hit);ORF_evidence=Q9XI85 (UniProt);InterPro=GDP-fucose protein O-fucosyltransferase (IPR019378);NIAS_FLcDNA=002-115-F02;Expression=AK064675;TENOR=Os03t0169000-02;KEGG=Os03t0169000-02
Chr03	irgsp1_rep	CDS	3718478	3718519	.	-	0	Parent=Os03t0169000-02
Chr03	irgsp1_rep	CDS	3718102	3718259	.	-	0	Parent=Os03t0169000-02
Chr03	irgsp1_rep	CDS	3717694	3717958	.	-	1	Parent=Os03t0169000-02
Chr03	irgsp1_rep	three_prime_UTR	3717564	3717693	.	-	.	Parent=Os03t0169000-02
Chr03	irgsp1_rep	three_prime_UTR	3714643	3714812	.	-	.	Parent=Os03t0169000-02
Chr03	irgsp1_rep	three_prime_UTR	3714360	3714521	.	-	.	Parent=Os03t0169000-02
Chr03	irgsp1_rep	three_prime_UTR	3713492	3714253	.	-	.	Parent=Os03t0169000-02
Chr03	irgsp1_rep	mRNA	3713990	3717346	.	+	.	ID=Os03t0169100-01;Name=Os03t0169100-01;Locus_id=Os03g0169100;Oryzabase Gene Symbol Synonym(s)=RPE;Oryzabase Gene Name Synonym(s)=D-ribulose-5-phosphate 3-epimerase%2C chl-RPEase%2C chloroplast RPEase%2C chloroplast D-Ribulose-5-phosphate 3-Epimerase;Note=Ribulose-phosphate 3-epimerase%2C chloroplast precursor (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (RPE) (R5P3E).;Transcript_evidence=AK066306 (DDBJ%2C Best hit),AK061772 (DDBJ%2C Best hit),AK099215 (DDBJ%2C Best hit);ORF_evidence=B8APA6 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ribulose-phosphate 3-epimerase activity (GO:0004750);InterPro=Ribulose-phosphate 3-epimerase (IPR000056),Ribulose-phosphate binding barrel (IPR011060),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J013061C21,001-039-C12,J013084F18;Oryzabase=13805;TENOR=Os03t0169100-01
Chr03	irgsp1_rep	five_prime_UTR	3713990	3714069	.	+	.	Parent=Os03t0169100-01
Chr03	irgsp1_rep	CDS	3714070	3714164	.	+	0	Parent=Os03t0169100-01
Chr03	irgsp1_rep	CDS	3714702	3714810	.	+	1	Parent=Os03t0169100-01
Chr03	irgsp1_rep	CDS	3714959	3715099	.	+	0	Parent=Os03t0169100-01
Chr03	irgsp1_rep	CDS	3715199	3715312	.	+	0	Parent=Os03t0169100-01
Chr03	irgsp1_rep	CDS	3715771	3715849	.	+	0	Parent=Os03t0169100-01
Chr03	irgsp1_rep	CDS	3716376	3716485	.	+	2	Parent=Os03t0169100-01
Chr03	irgsp1_rep	CDS	3716557	3716613	.	+	0	Parent=Os03t0169100-01
Chr03	irgsp1_rep	CDS	3716733	3716800	.	+	0	Parent=Os03t0169100-01
Chr03	irgsp1_rep	CDS	3716926	3716977	.	+	1	Parent=Os03t0169100-01
Chr03	irgsp1_rep	three_prime_UTR	3716978	3717346	.	+	.	Parent=Os03t0169100-01
Chr03	irgsp1_rep	mRNA	3724584	3726496	.	+	.	ID=Os03t0169300-01;Name=Os03t0169300-01;Locus_id=Os03g0169300;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK242896 (DDBJ%2C Best hit);ORF_evidence=NP_001173281.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J090081F08;TENOR=Os03t0169300-01;KEGG=Os03t0169300-01
Chr03	irgsp1_rep	five_prime_UTR	3724584	3724628	.	+	.	Parent=Os03t0169300-01
Chr03	irgsp1_rep	CDS	3724629	3726161	.	+	0	Parent=Os03t0169300-01
Chr03	irgsp1_rep	three_prime_UTR	3726162	3726496	.	+	.	Parent=Os03t0169300-01
Chr03	irgsp1_rep	mRNA	3727764	3728922	.	-	.	ID=Os03t0169400-01;Name=Os03t0169400-01;Locus_id=Os03g0169400;Note=Ribosomal protein L18/L5 domain containing protein.;Transcript_evidence=AK068500 (DDBJ%2C Best hit);ORF_evidence=XP_002890043.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L18/L5 (IPR005484);NIAS_FLcDNA=J013155L14;Expression=AK068500;TENOR=Os03t0169400-01;KEGG=Os03t0169400-01
Chr03	irgsp1_rep	five_prime_UTR	3728840	3728922	.	-	.	Parent=Os03t0169400-01
Chr03	irgsp1_rep	CDS	3728621	3728839	.	-	0	Parent=Os03t0169400-01
Chr03	irgsp1_rep	CDS	3728379	3728531	.	-	0	Parent=Os03t0169400-01
Chr03	irgsp1_rep	CDS	3727922	3728077	.	-	0	Parent=Os03t0169400-01
Chr03	irgsp1_rep	three_prime_UTR	3727764	3727921	.	-	.	Parent=Os03t0169400-01
Chr03	irgsp1_rep	mRNA	3729174	3733685	.	+	.	ID=Os03t0169500-01;Name=Os03t0169500-01;Locus_id=Os03g0169500;CGSNL Gene Symbol=CSLA4;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE A4;Oryzabase Gene Symbol Synonym(s)=OsCslA4%2C OsCSLA4;Note=Similar to Cellulose synthase-like A1.;Transcript_evidence=AK287855 (DDBJ%2C Best hit);ORF_evidence=Q8S7W0 (UniProt);InterPro=Glycosyl transferase%2C family 2 (IPR001173);NIAS_FLcDNA=J065196O16;Oryzabase=13882;TENOR=Os03t0169500-01;KEGG=Os03t0169500-01
Chr03	irgsp1_rep	five_prime_UTR	3729174	3729221	.	+	.	Parent=Os03t0169500-01
Chr03	irgsp1_rep	CDS	3729222	3729596	.	+	0	Parent=Os03t0169500-01
Chr03	irgsp1_rep	CDS	3730317	3730415	.	+	0	Parent=Os03t0169500-01
Chr03	irgsp1_rep	CDS	3731422	3731674	.	+	0	Parent=Os03t0169500-01
Chr03	irgsp1_rep	CDS	3732121	3732231	.	+	2	Parent=Os03t0169500-01
Chr03	irgsp1_rep	CDS	3732304	3732440	.	+	2	Parent=Os03t0169500-01
Chr03	irgsp1_rep	CDS	3732528	3732639	.	+	0	Parent=Os03t0169500-01
Chr03	irgsp1_rep	CDS	3732722	3732923	.	+	2	Parent=Os03t0169500-01
Chr03	irgsp1_rep	CDS	3733010	3733207	.	+	1	Parent=Os03t0169500-01
Chr03	irgsp1_rep	CDS	3733322	3733484	.	+	1	Parent=Os03t0169500-01
Chr03	irgsp1_rep	three_prime_UTR	3733485	3733685	.	+	.	Parent=Os03t0169500-01
Chr03	irgsp1_rep	mRNA	3732514	3733369	.	-	.	ID=Os03t0169550-00;Name=Os03t0169550-00;Locus_id=Os03g0169550;Note=Hypothetical gene.;Transcript_evidence=EU946219 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0169550-00;KEGG=Os03t0169550-00
Chr03	irgsp1_rep	five_prime_UTR	3732970	3733369	.	-	.	Parent=Os03t0169550-00
Chr03	irgsp1_rep	CDS	3732751	3732969	.	-	0	Parent=Os03t0169550-00
Chr03	irgsp1_rep	three_prime_UTR	3732514	3732750	.	-	.	Parent=Os03t0169550-00
Chr03	irgsp1_rep	mRNA	3738868	3741611	.	+	.	ID=Os03t0169600-01;Name=Os03t0169600-01;Locus_id=Os03g0169600;RAP-DB Gene Symbol Synonym(s)=RDD4%2C OsDof12%2C Dof12%2C OsDof-12%2C OsCDF1%2C OsCDF1/OsDOF12%2C OsDOF12%2C CDF1%2C DOF12;RAP-DB Gene Name Synonym(s)=RICE DOF DAILY FLUCTUATIONS 4%2C CYCLING DOF FACTOR 1%2C Dof zinc factor 12%2C Dof transcription factor 12;CGSNL Gene Symbol=RDD4;CGSNL Gene Name=RICE DOF DAILY FLUCTUATIONS 4;Oryzabase Gene Symbol Synonym(s)=OsDof12%2C Dof12%2C OsDof-12%2C OsCDF1%2C OsCDF1/OsDOF12%2C OsDOF12%2C CDF1%2C DOF12;Oryzabase Gene Name Synonym(s)=CYCLING DOF FACTOR 1%2C Dof zinc factor 12%2C Dof transcription factor 12;Note=Dof (DNA binding with one finger) transcription factor%2C Regulation of Flowering time%2C Brassinosteroid (BR) signaling to modulate plant architecture;Transcript_evidence=AK060900,AK104523;ORF_evidence=Q8S7W1;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Zinc finger%2C Dof-type (IPR003851);NIAS_FLcDNA=001-035-D05, 006-303-F03;Manual Curation=February 19%2C 2016;Literature_PMID=26500670,19198875;Oryzabase=8793;TENOR=Os03t0169600-01
Chr03	irgsp1_rep	five_prime_UTR	3738868	3739054	.	+	.	Parent=Os03t0169600-01
Chr03	irgsp1_rep	CDS	3739055	3739171	.	+	0	Parent=Os03t0169600-01
Chr03	irgsp1_rep	CDS	3740117	3741322	.	+	0	Parent=Os03t0169600-01
Chr03	irgsp1_rep	three_prime_UTR	3741323	3741611	.	+	.	Parent=Os03t0169600-01
Chr03	irgsp1_rep	mRNA	3739843	3741336	.	-	.	ID=Os03t0169700-01;Name=Os03t0169700-01;Locus_id=Os03g0169700;RAP-DB Gene Symbol Synonym(s)=OsDof12os;CGSNL Gene Symbol=DOF12OS;CGSNL Gene Name=DOF12 OPPOSITE STRAND;Oryzabase Gene Symbol Synonym(s)=OsDof12os%2C Dof12os;Oryzabase Gene Name Synonym(s)=antisense OsDof12 transcripts%2C opposite strand of OsDof12%2C OsDof12 opposite strand;Note=Antisense transcript of OsDof12%2C Functionally unknown protein;Transcript_evidence=AK066912;ORF_evidence=Q0DUS2;NIAS_FLcDNA=J013089G12;Manual Curation=February 22%2C 2016;Literature_PMID=18796165;Oryzabase=22363;Expression=AK066912;TENOR=Os03t0169700-01
Chr03	irgsp1_rep	five_prime_UTR	3740973	3741336	.	-	.	Parent=Os03t0169700-01
Chr03	irgsp1_rep	CDS	3740658	3740972	.	-	0	Parent=Os03t0169700-01
Chr03	irgsp1_rep	three_prime_UTR	3739843	3740657	.	-	.	Parent=Os03t0169700-01
Chr03	irgsp1_rep	mRNA	3744487	3746086	.	-	.	ID=Os03t0169800-01;Name=Os03t0169800-01;Locus_id=Os03g0169800;RAP-DB Gene Symbol Synonym(s)=WSL9;RAP-DB Gene Name Synonym(s)=white stripe leaf 9;CGSNL Gene Symbol=WSL9;CGSNL Gene Name=WHITE STRIPE LEAF 9;Oryzabase Gene Symbol Synonym(s)=OsWSL9;Oryzabase Gene Name Synonym(s)=white stripe leaf 9;Note=HNH endonuclease domain-containing protein%2C Early chloroplast development;Transcript_evidence=AK068278;ORF_evidence=Q8S7W2;GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: endonuclease activity (GO:0004519);InterPro=HNH nuclease (IPR003615),HNH endonuclease (IPR002711);NIAS_FLcDNA=J013136C11;Manual Curation=July 13%2C 2020;Literature_PMID=32654074;Oryzabase=23742;Expression=AK068278;TENOR=Os03t0169800-01;KEGG=Os03t0169800-01
Chr03	irgsp1_rep	five_prime_UTR	3746061	3746086	.	-	.	Parent=Os03t0169800-01
Chr03	irgsp1_rep	CDS	3745704	3746060	.	-	0	Parent=Os03t0169800-01
Chr03	irgsp1_rep	CDS	3745451	3745489	.	-	0	Parent=Os03t0169800-01
Chr03	irgsp1_rep	CDS	3744980	3745064	.	-	0	Parent=Os03t0169800-01
Chr03	irgsp1_rep	CDS	3744795	3744877	.	-	2	Parent=Os03t0169800-01
Chr03	irgsp1_rep	three_prime_UTR	3744487	3744794	.	-	.	Parent=Os03t0169800-01
Chr03	irgsp1_rep	mRNA	3747934	3750271	.	-	.	ID=Os03t0169900-01;Name=Os03t0169900-01;Locus_id=Os03g0169900;Note=Pathogenic type III effector avirulence factor Avr cleavage site domain containing protein.;Transcript_evidence=AK063222 (DDBJ%2C Best hit);ORF_evidence=Q10R68 (UniProt);InterPro=Pathogenic type III effector avirulence factor Avr cleavage site (IPR008700);NIAS_FLcDNA=001-112-E07;Expression=AK063222;TENOR=Os03t0169900-01;KEGG=Os03t0169900-01
Chr03	irgsp1_rep	five_prime_UTR	3750271	3750271	.	-	.	Parent=Os03t0169900-01
Chr03	irgsp1_rep	CDS	3749968	3750270	.	-	0	Parent=Os03t0169900-01
Chr03	irgsp1_rep	CDS	3748178	3748225	.	-	0	Parent=Os03t0169900-01
Chr03	irgsp1_rep	three_prime_UTR	3747934	3748177	.	-	.	Parent=Os03t0169900-01
Chr03	irgsp1_rep	mRNA	3751182	3753905	.	+	.	ID=Os03t0170000-01;Name=Os03t0170000-01;Locus_id=Os03g0170000;Note=Conserved hypothetical protein.;Transcript_evidence=AK288238 (DDBJ%2C Best hit);ORF_evidence=Q8LMQ5 (UniProt);NIAS_FLcDNA=J090013H18;TENOR=Os03t0170000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	3751182	3753615	.	+	.	Parent=Os03t0170000-01
Chr03	irgsp1_rep	CDS	3753616	3753729	.	+	0	Parent=Os03t0170000-01
Chr03	irgsp1_rep	three_prime_UTR	3753730	3753905	.	+	.	Parent=Os03t0170000-01
Chr03	irgsp1_rep	mRNA	3757543	3758135	.	-	.	ID=Os03t0170100-00;Name=Os03t0170100-00;Locus_id=Os03g0170100;Note=Conserved hypothetical protein.;Transcript_evidence=CT835103 (DDBJ%2C Best hit);ORF_evidence=NP_001049105.1 (RefSeq);TENOR=Os03t0170100-00;KEGG=Os03t0170100-00
Chr03	irgsp1_rep	five_prime_UTR	3758062	3758135	.	-	.	Parent=Os03t0170100-00
Chr03	irgsp1_rep	CDS	3757702	3758061	.	-	0	Parent=Os03t0170100-00
Chr03	irgsp1_rep	three_prime_UTR	3757543	3757701	.	-	.	Parent=Os03t0170100-00
Chr03	irgsp1_rep	mRNA	3760652	3762362	.	-	.	ID=Os03t0170200-01;Name=Os03t0170200-01;Locus_id=Os03g0170200;Note=Similar to MADS-box transcription factor 30.;Transcript_evidence=AK067518 (DDBJ%2C Best hit);ORF_evidence=Q655V4 (UniProt);NIAS_FLcDNA=J013110N09;TENOR=Os03t0170200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	3761976	3762362	.	-	.	Parent=Os03t0170200-01
Chr03	irgsp1_rep	five_prime_UTR	3761218	3761857	.	-	.	Parent=Os03t0170200-01
Chr03	irgsp1_rep	CDS	3760999	3761217	.	-	0	Parent=Os03t0170200-01
Chr03	irgsp1_rep	three_prime_UTR	3760652	3760998	.	-	.	Parent=Os03t0170200-01
Chr03	irgsp1_rep	mRNA	3760520	3762293	.	-	.	ID=Os03t0170200-02;Name=Os03t0170200-02;Locus_id=Os03g0170200;Note=Conserved hypothetical protein.;Transcript_evidence=AK060801 (DDBJ%2C Best hit);ORF_evidence=NP_001174894.1 (RefSeq);NIAS_FLcDNA=001-033-F05;TENOR=Os03t0170200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	3761968	3762293	.	-	.	Parent=Os03t0170200-02
Chr03	irgsp1_rep	CDS	3761650	3761967	.	-	0	Parent=Os03t0170200-02
Chr03	irgsp1_rep	three_prime_UTR	3761121	3761649	.	-	.	Parent=Os03t0170200-02
Chr03	irgsp1_rep	three_prime_UTR	3760520	3760876	.	-	.	Parent=Os03t0170200-02
Chr03	irgsp1_rep	mRNA	3763827	3767153	.	+	.	ID=Os03t0170300-01;Name=Os03t0170300-01;Locus_id=Os03g0170300;Note=3-dehydroquinate synthase family protein.;Transcript_evidence=AK067530 (DDBJ%2C Best hit);ORF_evidence=B4FYZ3 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=3-dehydroquinate synthase%2C prokaryotic-type (IPR002812);NIAS_FLcDNA=J013107M24;Expression=AK067530;TENOR=Os03t0170300-01;KEGG=Os03t0170300-01
Chr03	irgsp1_rep	five_prime_UTR	3763827	3763843	.	+	.	Parent=Os03t0170300-01
Chr03	irgsp1_rep	CDS	3763844	3763901	.	+	0	Parent=Os03t0170300-01
Chr03	irgsp1_rep	CDS	3764287	3764463	.	+	2	Parent=Os03t0170300-01
Chr03	irgsp1_rep	CDS	3764803	3764972	.	+	2	Parent=Os03t0170300-01
Chr03	irgsp1_rep	CDS	3765307	3765405	.	+	0	Parent=Os03t0170300-01
Chr03	irgsp1_rep	CDS	3765521	3765589	.	+	0	Parent=Os03t0170300-01
Chr03	irgsp1_rep	CDS	3765824	3765964	.	+	0	Parent=Os03t0170300-01
Chr03	irgsp1_rep	CDS	3766148	3766237	.	+	0	Parent=Os03t0170300-01
Chr03	irgsp1_rep	CDS	3766336	3766503	.	+	0	Parent=Os03t0170300-01
Chr03	irgsp1_rep	CDS	3766588	3766663	.	+	0	Parent=Os03t0170300-01
Chr03	irgsp1_rep	CDS	3766825	3766949	.	+	2	Parent=Os03t0170300-01
Chr03	irgsp1_rep	three_prime_UTR	3766950	3767153	.	+	.	Parent=Os03t0170300-01
Chr03	irgsp1_rep	mRNA	3767426	3771538	.	-	.	ID=Os03t0170400-01;Name=Os03t0170400-01;Locus_id=Os03g0170400;CGSNL Gene Symbol=RLCK102;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 102;Oryzabase Gene Symbol Synonym(s)=OsRLCK102;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 102;Note=Similar to serine/threonine-protein kinase NAK.;Transcript_evidence=AK243489 (DDBJ%2C Best hit);ORF_evidence=NP_001147807.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J100073M12;Oryzabase=18811;TENOR=Os03t0170400-01;KEGG=Os03t0170400-01 (EC:2.7.11.1)
Chr03	irgsp1_rep	five_prime_UTR	3770744	3771538	.	-	.	Parent=Os03t0170400-01
Chr03	irgsp1_rep	CDS	3770686	3770743	.	-	0	Parent=Os03t0170400-01
Chr03	irgsp1_rep	CDS	3769579	3769937	.	-	2	Parent=Os03t0170400-01
Chr03	irgsp1_rep	CDS	3769356	3769491	.	-	0	Parent=Os03t0170400-01
Chr03	irgsp1_rep	CDS	3769063	3769253	.	-	2	Parent=Os03t0170400-01
Chr03	irgsp1_rep	three_prime_UTR	3768901	3769062	.	-	.	Parent=Os03t0170400-01
Chr03	irgsp1_rep	three_prime_UTR	3767426	3768373	.	-	.	Parent=Os03t0170400-01
Chr03	irgsp1_rep	mRNA	3767753	3771331	.	-	.	ID=Os03t0170400-02;Name=Os03t0170400-02;Locus_id=Os03g0170400;CGSNL Gene Symbol=RLCK102;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 102;Oryzabase Gene Symbol Synonym(s)=OsRLCK102;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 102;Note=Similar to serine/threonine-protein kinase NAK.;Transcript_evidence=AK242042 (DDBJ%2C Best hit);ORF_evidence=NP_001147807.1 (RefSeq);NIAS_FLcDNA=J075119F12;Oryzabase=18811;TENOR=Os03t0170400-02;KEGG=Os03t0170400-02
Chr03	irgsp1_rep	five_prime_UTR	3770744	3771331	.	-	.	Parent=Os03t0170400-02
Chr03	irgsp1_rep	CDS	3770686	3770743	.	-	0	Parent=Os03t0170400-02
Chr03	irgsp1_rep	CDS	3769833	3769940	.	-	2	Parent=Os03t0170400-02
Chr03	irgsp1_rep	CDS	3769579	3769753	.	-	2	Parent=Os03t0170400-02
Chr03	irgsp1_rep	CDS	3769491	3769491	.	-	1	Parent=Os03t0170400-02
Chr03	irgsp1_rep	three_prime_UTR	3769356	3769490	.	-	.	Parent=Os03t0170400-02
Chr03	irgsp1_rep	three_prime_UTR	3769117	3769253	.	-	.	Parent=Os03t0170400-02
Chr03	irgsp1_rep	three_prime_UTR	3768901	3769024	.	-	.	Parent=Os03t0170400-02
Chr03	irgsp1_rep	three_prime_UTR	3767753	3768373	.	-	.	Parent=Os03t0170400-02
Chr03	irgsp1_rep	mRNA	3768083	3769769	.	+	.	ID=Os03t0170450-00;Name=Os03t0170450-00;Locus_id=Os03g0170450;Note=Hypothetical protein.;Transcript_evidence=tplb0027d05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0170450-00
Chr03	irgsp1_rep	five_prime_UTR	3768083	3768387	.	+	.	Parent=Os03t0170450-00
Chr03	irgsp1_rep	five_prime_UTR	3768922	3769029	.	+	.	Parent=Os03t0170450-00
Chr03	irgsp1_rep	five_prime_UTR	3769121	3769129	.	+	.	Parent=Os03t0170450-00
Chr03	irgsp1_rep	CDS	3769130	3769253	.	+	0	Parent=Os03t0170450-00
Chr03	irgsp1_rep	CDS	3769358	3769489	.	+	2	Parent=Os03t0170450-00
Chr03	irgsp1_rep	CDS	3769582	3769616	.	+	2	Parent=Os03t0170450-00
Chr03	irgsp1_rep	three_prime_UTR	3769617	3769769	.	+	.	Parent=Os03t0170450-00
Chr03	irgsp1_rep	mRNA	3776809	3777621	.	-	.	ID=Os03t0170500-00;Name=Os03t0170500-00;Locus_id=Os03g0170500;Note=Similar to Putativ eribonuclease P.;Transcript_evidence=CT835093 (DDBJ%2C Best hit);ORF_evidence=B6SR38 (UniProt);TENOR=Os03t0170500-00;KEGG=Os03t0170500-00
Chr03	irgsp1_rep	five_prime_UTR	3777518	3777621	.	-	.	Parent=Os03t0170500-00
Chr03	irgsp1_rep	CDS	3776960	3777517	.	-	0	Parent=Os03t0170500-00
Chr03	irgsp1_rep	three_prime_UTR	3776809	3776959	.	-	.	Parent=Os03t0170500-00
Chr03	irgsp1_rep	mRNA	3784341	3785140	.	-	.	ID=Os03t0170600-01;Name=Os03t0170600-01;Locus_id=Os03g0170600;CGSNL Gene Symbol=HOX21;CGSNL Gene Name=HOMEOBOX GENE 21;Oryzabase Gene Symbol Synonym(s)=Oshox21%2C OsHox21;Oryzabase Gene Name Synonym(s)=rice homeobox gene 21%2C Homeobox-leucine zipper protein HOX21%2C Homeodomain transcription factor HOX21%2C HD-ZIP protein HOX21;Note=Similar to Homeobox-leucine zipper protein HOX21.;Transcript_evidence=AK108366 (DDBJ%2C Best hit);ORF_evidence=Q8S7W9 (UniProt);NIAS_FLcDNA=002-142-D03;Oryzabase=8458;Expression=AK108366;TENOR=Os03t0170600-01;KEGG=Os03t0170600-01
Chr03	irgsp1_rep	five_prime_UTR	3785139	3785140	.	-	.	Parent=Os03t0170600-01
Chr03	irgsp1_rep	CDS	3784926	3785138	.	-	0	Parent=Os03t0170600-01
Chr03	irgsp1_rep	three_prime_UTR	3784341	3784925	.	-	.	Parent=Os03t0170600-01
Chr03	irgsp1_rep	mRNA	3786235	3787068	.	+	.	ID=Os03t0170701-00;Name=Os03t0170701-00;Locus_id=Os03g0170701;Note=Hypothetical gene.;Transcript_evidence=CT837907 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os03t0170701-00;KEGG=Os03t0170701-00
Chr03	irgsp1_rep	five_prime_UTR	3786235	3786699	.	+	.	Parent=Os03t0170701-00
Chr03	irgsp1_rep	CDS	3786700	3787023	.	+	0	Parent=Os03t0170701-00
Chr03	irgsp1_rep	three_prime_UTR	3787024	3787068	.	+	.	Parent=Os03t0170701-00
Chr03	irgsp1_rep	mRNA	3794582	3795566	.	+	.	ID=Os03t0170800-00;Name=Os03t0170800-00;Locus_id=Os03g0170800;Oryzabase Gene Symbol Synonym(s)=OsGRL5;Oryzabase Gene Name Synonym(s)=GRX-like protein 5%2C glutaredoxin-like protein 5;Note=Hypothetical conserved gene.;Transcript_evidence=EU955695 (DDBJ);ORF_evidence=Q8S7X1 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin (IPR002109),Thioredoxin-like fold (IPR012336);Oryzabase=13595;TENOR=Os03t0170800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	3794582	3795550	.	+	0	Parent=Os03t0170800-00
Chr03	irgsp1_rep	three_prime_UTR	3795551	3795566	.	+	.	Parent=Os03t0170800-00
Chr03	irgsp1_rep	mRNA	3797807	3804132	.	-	.	ID=Os03t0170900-01;Name=Os03t0170900-01;Locus_id=Os03g0170900;RAP-DB Gene Symbol Synonym(s)=OsSUT1;RAP-DB Gene Name Synonym(s)=Sucrose transporter 1;CGSNL Gene Symbol=SUT1;CGSNL Gene Name=SUCROSE TRANSPORTER 1;Oryzabase Gene Symbol Synonym(s)=OsSUT1%2C OsSUT2;Oryzabase Gene Name Synonym(s)=Sucrose transporter-1%2C Sucrose transporter 1;Note=Sucrose transporter%2C Required for apoplastic phloem sucrose loading%2C Essential for normal pollen germination;Transcript_evidence=AK100027;ORF_evidence=Q10R54;GO=Biological Process: sucrose transport (GO:0015770),Molecular Function: sucrose transmembrane transporter activity (GO:0008515),Cellular Component: integral component of plasma membrane (GO:0005887);InterPro=MFS transporter superfamily (IPR036259),Sucrose/H+ symporter%2C plant (IPR005989);NIAS_FLcDNA=J013146J01;Manual Curation=March 18%2C 2019;Literature_PMID=20603282,17138625,9522469;Oryzabase=6297;Expression=AK100027;TENOR=Os03t0170900-01;KEGG=Os03t0170900-01
Chr03	irgsp1_rep	five_prime_UTR	3803935	3804132	.	-	.	Parent=Os03t0170900-01
Chr03	irgsp1_rep	CDS	3803698	3803934	.	-	0	Parent=Os03t0170900-01
Chr03	irgsp1_rep	CDS	3801023	3801088	.	-	0	Parent=Os03t0170900-01
Chr03	irgsp1_rep	CDS	3800593	3800691	.	-	0	Parent=Os03t0170900-01
Chr03	irgsp1_rep	CDS	3800439	3800503	.	-	0	Parent=Os03t0170900-01
Chr03	irgsp1_rep	CDS	3800289	3800373	.	-	1	Parent=Os03t0170900-01
Chr03	irgsp1_rep	CDS	3800168	3800201	.	-	0	Parent=Os03t0170900-01
Chr03	irgsp1_rep	CDS	3799902	3800001	.	-	2	Parent=Os03t0170900-01
Chr03	irgsp1_rep	CDS	3799660	3799735	.	-	1	Parent=Os03t0170900-01
Chr03	irgsp1_rep	CDS	3799240	3799434	.	-	0	Parent=Os03t0170900-01
Chr03	irgsp1_rep	CDS	3798978	3799121	.	-	0	Parent=Os03t0170900-01
Chr03	irgsp1_rep	CDS	3798635	3798868	.	-	0	Parent=Os03t0170900-01
Chr03	irgsp1_rep	CDS	3798469	3798532	.	-	0	Parent=Os03t0170900-01
Chr03	irgsp1_rep	CDS	3798342	3798385	.	-	2	Parent=Os03t0170900-01
Chr03	irgsp1_rep	CDS	3798052	3798225	.	-	0	Parent=Os03t0170900-01
Chr03	irgsp1_rep	three_prime_UTR	3797807	3798051	.	-	.	Parent=Os03t0170900-01
Chr03	irgsp1_rep	mRNA	3797698	3799435	.	-	.	ID=Os03t0170900-02;Name=Os03t0170900-02;Locus_id=Os03g0170900;CGSNL Gene Symbol=SUT1;CGSNL Gene Name=SUCROSE TRANSPORTER 1;Oryzabase Gene Symbol Synonym(s)=OsSUT1%2C OsSUT2;Oryzabase Gene Name Synonym(s)=Sucrose transporter-1%2C Sucrose transporter 1;Note=Similar to Sucrose transporter.;Transcript_evidence=AK109355 (DDBJ%2C Best hit);ORF_evidence=Q10R54 (UniProt);InterPro=Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=006-205-F11;Oryzabase=6297;Expression=AK109355;TENOR=Os03t0170900-02;KEGG=Os03t0170900-02
Chr03	irgsp1_rep	five_prime_UTR	3799435	3799435	.	-	.	Parent=Os03t0170900-02
Chr03	irgsp1_rep	CDS	3799240	3799434	.	-	0	Parent=Os03t0170900-02
Chr03	irgsp1_rep	CDS	3798978	3799121	.	-	0	Parent=Os03t0170900-02
Chr03	irgsp1_rep	CDS	3798635	3798868	.	-	0	Parent=Os03t0170900-02
Chr03	irgsp1_rep	CDS	3798469	3798532	.	-	0	Parent=Os03t0170900-02
Chr03	irgsp1_rep	CDS	3798342	3798385	.	-	2	Parent=Os03t0170900-02
Chr03	irgsp1_rep	CDS	3798052	3798225	.	-	0	Parent=Os03t0170900-02
Chr03	irgsp1_rep	three_prime_UTR	3797698	3798051	.	-	.	Parent=Os03t0170900-02
Chr03	irgsp1_rep	mRNA	3814378	3823216	.	-	.	ID=Os03t0171300-01;Name=Os03t0171300-01;Locus_id=Os03g0171300;RAP-DB Gene Symbol Synonym(s)=PGL1%2C ILI6;RAP-DB Gene Name Synonym(s)=POSITIVE REGULATOR OF GRAIN LENGTH 1%2C Increased Leaf Inclination6;CGSNL Gene Symbol=ILI6;CGSNL Gene Name=INCREASED LEAF INCLINATION 6;Oryzabase Gene Symbol Synonym(s)=ILI6%2C OsILI6%2C PGL1%2C OsPGL1;Oryzabase Gene Name Synonym(s)=Increased Leaf Inclination6%2C POSITIVE REGULATOR OF GRAIN LENGTH 1;Note=Atypical non-DNA-binding bHLH protein%2C Inhibitor of a typical bHLH%2C Positive regulation of grain length and weight;Transcript_evidence=AK069569;ORF_evidence=Q0DUR2;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Helix-loop-helix DNA-binding domain superfamily (IPR036638),Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);NIAS_FLcDNA=J023022K12;Manual Curation=January 16%2C 2019;Literature_PMID=22363621;Oryzabase=10949;Expression=AK069569;TENOR=Os03t0171300-01;KEGG=Os03t0171300-01;Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737)
Chr03	irgsp1_rep	five_prime_UTR	3823125	3823216	.	-	.	Parent=Os03t0171300-01
Chr03	irgsp1_rep	five_prime_UTR	3818190	3818292	.	-	.	Parent=Os03t0171300-01
Chr03	irgsp1_rep	five_prime_UTR	3817579	3817666	.	-	.	Parent=Os03t0171300-01
Chr03	irgsp1_rep	five_prime_UTR	3817318	3817407	.	-	.	Parent=Os03t0171300-01
Chr03	irgsp1_rep	five_prime_UTR	3815266	3815810	.	-	.	Parent=Os03t0171300-01
Chr03	irgsp1_rep	CDS	3815140	3815265	.	-	0	Parent=Os03t0171300-01
Chr03	irgsp1_rep	CDS	3814603	3814755	.	-	0	Parent=Os03t0171300-01
Chr03	irgsp1_rep	three_prime_UTR	3814378	3814602	.	-	.	Parent=Os03t0171300-01
Chr03	irgsp1_rep	mRNA	3834150	3836591	.	+	.	ID=Os03t0171600-01;Name=Os03t0171600-01;Locus_id=Os03g0171600;RAP-DB Gene Symbol Synonym(s)=OsFBK12%2C OsFbox130%2C Os_F0642;RAP-DB Gene Name Synonym(s)=F-Box Protein 12%2C F-box protein 130%2C F-box protein containing kelch motif 12;Oryzabase Gene Symbol Synonym(s)=OsFBK12%2C OsFbox130%2C Os_F0642;Oryzabase Gene Name Synonym(s)=F-Box Protein 12%2C F-box protein 130%2C F-box protein containing kelch motif 12;Note=F-box protein containing a Kelch repeat motif%2C Reguration of leaf senescence%2C seed size and grain number;Transcript_evidence=AK072716;ORF_evidence=Q10R48;GO=Molecular Function: protein binding (GO:0005515);InterPro=Galactose oxidase%2C beta-propeller (IPR015916),Kelch repeat type 1 (IPR006652);NIAS_FLcDNA=J023139I09;Manual Curation=December 12%2C 2013;Literature_PMID=24144792;Oryzabase=15028;TENOR=Os03t0171600-01;KEGG=Os03t0171600-01
Chr03	irgsp1_rep	five_prime_UTR	3834150	3834231	.	+	.	Parent=Os03t0171600-01
Chr03	irgsp1_rep	five_prime_UTR	3834775	3834888	.	+	.	Parent=Os03t0171600-01
Chr03	irgsp1_rep	CDS	3834889	3836184	.	+	0	Parent=Os03t0171600-01
Chr03	irgsp1_rep	three_prime_UTR	3836185	3836591	.	+	.	Parent=Os03t0171600-01
Chr03	irgsp1_rep	mRNA	3834827	3836572	.	+	.	ID=Os03t0171600-02;Name=Os03t0171600-02;Locus_id=Os03g0171600;Oryzabase Gene Symbol Synonym(s)=OsFBK12%2C OsFbox130%2C Os_F0642;Oryzabase Gene Name Synonym(s)=F-Box Protein 12%2C F-box protein 130%2C F-box protein containing kelch motif 12;Note=Kelch-type beta propeller domain containing protein.;Transcript_evidence=AK061344 (DDBJ%2C Best hit);ORF_evidence=NP_001148653.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Kelch repeat type 1 (IPR006652),Galactose oxidase%2C beta-propeller (IPR015916);NIAS_FLcDNA=006-303-E07;Oryzabase=15028;TENOR=Os03t0171600-02;KEGG=Os03t0171600-02
Chr03	irgsp1_rep	five_prime_UTR	3834827	3834888	.	+	.	Parent=Os03t0171600-02
Chr03	irgsp1_rep	CDS	3834889	3836184	.	+	0	Parent=Os03t0171600-02
Chr03	irgsp1_rep	three_prime_UTR	3836185	3836572	.	+	.	Parent=Os03t0171600-02
Chr03	irgsp1_rep	mRNA	3834959	3836735	.	+	.	ID=Os03t0171600-03;Name=Os03t0171600-03;Locus_id=Os03g0171600;Oryzabase Gene Symbol Synonym(s)=OsFBK12%2C OsFbox130%2C Os_F0642;Oryzabase Gene Name Synonym(s)=F-Box Protein 12%2C F-box protein 130%2C F-box protein containing kelch motif 12;Note=Similar to kelch motif family protein.;Transcript_evidence=AK062570 (DDBJ%2C Best hit);ORF_evidence=NP_001148653.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Kelch repeat type 1 (IPR006652),Galactose oxidase%2C beta-propeller (IPR015916);NIAS_FLcDNA=001-046-A09;Oryzabase=15028;TENOR=Os03t0171600-03;KEGG=Os03t0171600-03
Chr03	irgsp1_rep	five_prime_UTR	3834959	3834960	.	+	.	Parent=Os03t0171600-03
Chr03	irgsp1_rep	CDS	3834961	3836184	.	+	0	Parent=Os03t0171600-03
Chr03	irgsp1_rep	three_prime_UTR	3836185	3836735	.	+	.	Parent=Os03t0171600-03
Chr03	irgsp1_rep	mRNA	3845564	3846658	.	+	.	ID=Os03t0171700-01;Name=Os03t0171700-01;Locus_id=Os03g0171700;CGSNL Gene Symbol=ILI3;CGSNL Gene Name=INCREASED LEAF INCLINATION 3;Oryzabase Gene Symbol Synonym(s)=OsILI3%2C OsbHLH153%2C bHLH153%2C OsBUL2%2C BUL2;Oryzabase Gene Name Synonym(s)=Increased Leaf Inclination3%2C basic helix-loop-helix protein 153%2C BRASSINOSTEROID UPREGULATED 1-LIKE2%2C BRASSINOSTEROID UPREGULATED 1-LIKE 2;Note=Basic helix-loop-helix dimerisation region bHLH domain containing protein.;Transcript_evidence=AK241674 (DDBJ%2C Best hit);ORF_evidence=NP_001149761.1 (RefSeq);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J065192H12;Oryzabase=10947;TENOR=Os03t0171700-01;KEGG=Os03t0171700-01
Chr03	irgsp1_rep	five_prime_UTR	3845564	3845712	.	+	.	Parent=Os03t0171700-01
Chr03	irgsp1_rep	CDS	3845713	3845835	.	+	0	Parent=Os03t0171700-01
Chr03	irgsp1_rep	CDS	3846125	3846277	.	+	0	Parent=Os03t0171700-01
Chr03	irgsp1_rep	three_prime_UTR	3846278	3846658	.	+	.	Parent=Os03t0171700-01
Chr03	irgsp1_rep	mRNA	3854304	3858338	.	+	.	ID=Os03t0171900-01;Name=Os03t0171900-01;Locus_id=Os03g0171900;Note=Similar to Alanine:glyoxylate aminotransferase-like protein (Fragment).;Transcript_evidence=AK105642 (DDBJ%2C Best hit);ORF_evidence=D2KZ10 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: transaminase activity (GO:0008483),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferase class-III (IPR005814),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=001-200-E11;Expression=AK105642;TENOR=Os03t0171900-01;KEGG=Os03t0171900-01 (EC:2.6.1.40%2C EC:2.6.1.44)
Chr03	irgsp1_rep	five_prime_UTR	3854304	3854496	.	+	.	Parent=Os03t0171900-01
Chr03	irgsp1_rep	CDS	3854497	3854760	.	+	0	Parent=Os03t0171900-01
Chr03	irgsp1_rep	CDS	3855140	3855370	.	+	0	Parent=Os03t0171900-01
Chr03	irgsp1_rep	CDS	3855466	3855636	.	+	0	Parent=Os03t0171900-01
Chr03	irgsp1_rep	CDS	3856592	3856735	.	+	0	Parent=Os03t0171900-01
Chr03	irgsp1_rep	CDS	3856853	3857032	.	+	0	Parent=Os03t0171900-01
Chr03	irgsp1_rep	CDS	3857139	3857364	.	+	0	Parent=Os03t0171900-01
Chr03	irgsp1_rep	CDS	3857539	3857652	.	+	2	Parent=Os03t0171900-01
Chr03	irgsp1_rep	CDS	3857754	3857840	.	+	2	Parent=Os03t0171900-01
Chr03	irgsp1_rep	CDS	3857924	3857967	.	+	2	Parent=Os03t0171900-01
Chr03	irgsp1_rep	three_prime_UTR	3857968	3858338	.	+	.	Parent=Os03t0171900-01
Chr03	irgsp1_rep	mRNA	3854439	3858293	.	+	.	ID=Os03t0171900-02;Name=Os03t0171900-02;Locus_id=Os03g0171900;Note=Similar to Alanine:glyoxylate aminotransferase-like protein (Fragment).;Transcript_evidence=AK061079 (DDBJ%2C Best hit);ORF_evidence=D2KZ10 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: transaminase activity (GO:0008483),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferase class-III (IPR005814),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=006-206-E11;Expression=AK061079;TENOR=Os03t0171900-02;KEGG=Os03t0171900-02 (EC:2.6.1.40%2C EC:2.6.1.44)
Chr03	irgsp1_rep	five_prime_UTR	3854439	3854496	.	+	.	Parent=Os03t0171900-02
Chr03	irgsp1_rep	CDS	3854497	3854760	.	+	0	Parent=Os03t0171900-02
Chr03	irgsp1_rep	CDS	3855140	3855370	.	+	0	Parent=Os03t0171900-02
Chr03	irgsp1_rep	CDS	3855466	3855636	.	+	0	Parent=Os03t0171900-02
Chr03	irgsp1_rep	CDS	3856592	3856735	.	+	0	Parent=Os03t0171900-02
Chr03	irgsp1_rep	CDS	3856853	3857032	.	+	0	Parent=Os03t0171900-02
Chr03	irgsp1_rep	CDS	3857139	3857364	.	+	0	Parent=Os03t0171900-02
Chr03	irgsp1_rep	CDS	3857539	3857652	.	+	2	Parent=Os03t0171900-02
Chr03	irgsp1_rep	CDS	3857754	3857840	.	+	2	Parent=Os03t0171900-02
Chr03	irgsp1_rep	CDS	3857924	3857967	.	+	2	Parent=Os03t0171900-02
Chr03	irgsp1_rep	three_prime_UTR	3857968	3858293	.	+	.	Parent=Os03t0171900-02
Chr03	irgsp1_rep	mRNA	3855141	3857362	.	-	.	ID=Os03t0171950-00;Name=Os03t0171950-00;Locus_id=Os03g0171950;Note=Non-protein coding transcript.;Transcript_evidence=BT083955 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0171950-00
Chr03	irgsp1_rep	exon	3857137	3857362	.	-	.	Parent=Os03t0171950-00
Chr03	irgsp1_rep	exon	3856843	3857030	.	-	.	Parent=Os03t0171950-00
Chr03	irgsp1_rep	exon	3856602	3856727	.	-	.	Parent=Os03t0171950-00
Chr03	irgsp1_rep	exon	3855470	3855645	.	-	.	Parent=Os03t0171950-00
Chr03	irgsp1_rep	exon	3855141	3855372	.	-	.	Parent=Os03t0171950-00
Chr03	irgsp1_rep	mRNA	3859447	3864370	.	+	.	ID=Os03t0172000-01;Name=Os03t0172000-01;Locus_id=Os03g0172000;Oryzabase Gene Symbol Synonym(s)=MOS3/SAR3%2C MOS3%2C SAR3%2C OsNucAP1%2C NUCAP1%2C OsNup96%2C Nup96;Oryzabase Gene Name Synonym(s)="MODIFIER OF SNC1%2C 3/SUPPRESSOR OF AUXIN RESISTANCE 3"%2C "MODIFIER OF SNC1%2C 3"%2C SUPPRESSOR OF AUXIN RESISTANCE 3%2C Nucleoporin Autopeptidase 1%2C nucleoporin 96;Note=Peptidase S59%2C nucleoporin family protein.;Transcript_evidence=AK122024 (DDBJ%2C Best hit);ORF_evidence=NP_178183.2 (RefSeq);GO=Biological Process: transport (GO:0006810),Cellular Component: nuclear pore (GO:0005643);InterPro=Peptidase S59%2C nucleoporin (IPR007230),Nuclear protein 96 (IPR021967);NIAS_FLcDNA=J033111P14;Oryzabase=19095;Expression=AK122024;TENOR=Os03t0172000-01;KEGG=Os03t0172000-01
Chr03	irgsp1_rep	five_prime_UTR	3859447	3859547	.	+	.	Parent=Os03t0172000-01
Chr03	irgsp1_rep	five_prime_UTR	3859680	3859842	.	+	.	Parent=Os03t0172000-01
Chr03	irgsp1_rep	CDS	3859843	3862302	.	+	0	Parent=Os03t0172000-01
Chr03	irgsp1_rep	CDS	3862448	3862571	.	+	0	Parent=Os03t0172000-01
Chr03	irgsp1_rep	CDS	3862854	3862999	.	+	2	Parent=Os03t0172000-01
Chr03	irgsp1_rep	CDS	3863074	3863171	.	+	0	Parent=Os03t0172000-01
Chr03	irgsp1_rep	CDS	3863526	3863715	.	+	1	Parent=Os03t0172000-01
Chr03	irgsp1_rep	three_prime_UTR	3863716	3864370	.	+	.	Parent=Os03t0172000-01
Chr03	irgsp1_rep	mRNA	3860925	3864548	.	+	.	ID=Os03t0172000-02;Name=Os03t0172000-02;Locus_id=Os03g0172000;Oryzabase Gene Symbol Synonym(s)=MOS3/SAR3%2C MOS3%2C SAR3%2C OsNucAP1%2C NUCAP1%2C OsNup96%2C Nup96;Oryzabase Gene Name Synonym(s)="MODIFIER OF SNC1%2C 3/SUPPRESSOR OF AUXIN RESISTANCE 3"%2C "MODIFIER OF SNC1%2C 3"%2C SUPPRESSOR OF AUXIN RESISTANCE 3%2C Nucleoporin Autopeptidase 1%2C nucleoporin 96;Note=Similar to predicted protein.;Transcript_evidence=AK073393 (DDBJ%2C Best hit);ORF_evidence=NP_178183.2 (RefSeq);InterPro=Nuclear protein 96 (IPR021967);NIAS_FLcDNA=J033041M14;Oryzabase=19095;Expression=AK073393;TENOR=Os03t0172000-02;KEGG=Os03t0172000-02
Chr03	irgsp1_rep	five_prime_UTR	3860925	3860925	.	+	.	Parent=Os03t0172000-02
Chr03	irgsp1_rep	CDS	3860926	3862302	.	+	0	Parent=Os03t0172000-02
Chr03	irgsp1_rep	CDS	3862448	3862571	.	+	0	Parent=Os03t0172000-02
Chr03	irgsp1_rep	CDS	3862854	3862999	.	+	2	Parent=Os03t0172000-02
Chr03	irgsp1_rep	CDS	3863074	3863171	.	+	0	Parent=Os03t0172000-02
Chr03	irgsp1_rep	CDS	3863526	3863715	.	+	1	Parent=Os03t0172000-02
Chr03	irgsp1_rep	three_prime_UTR	3863716	3864548	.	+	.	Parent=Os03t0172000-02
Chr03	irgsp1_rep	mRNA	3866613	3867121	.	+	.	ID=Os03t0172100-01;Name=Os03t0172100-01;Locus_id=Os03g0172100;Oryzabase Gene Name Synonym(s)="Protein CHUP1%2C chloroplastic";Note=Similar to Leucine zipper protein.;Transcript_evidence=AK121297 (DDBJ%2C Best hit);ORF_evidence=P93427 (UniProt);NIAS_FLcDNA=J023110J24;Oryzabase=22526;Expression=AK121297;TENOR=Os03t0172100-01;KEGG=Os03t0172100-01
Chr03	irgsp1_rep	five_prime_UTR	3866613	3866686	.	+	.	Parent=Os03t0172100-01
Chr03	irgsp1_rep	CDS	3866687	3866935	.	+	0	Parent=Os03t0172100-01
Chr03	irgsp1_rep	three_prime_UTR	3866936	3867121	.	+	.	Parent=Os03t0172100-01
Chr03	irgsp1_rep	mRNA	3867253	3871354	.	-	.	ID=Os03t0172200-01;Name=Os03t0172200-01;Locus_id=Os03g0172200;Note=Mo25-like domain containing protein.;Transcript_evidence=AK069130 (DDBJ%2C Best hit);ORF_evidence=NP_001151860.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Mo25-like (IPR013878),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023008H01;Expression=AK069130;TENOR=Os03t0172200-01;KEGG=Os03t0172200-01
Chr03	irgsp1_rep	five_prime_UTR	3871142	3871354	.	-	.	Parent=Os03t0172200-01
Chr03	irgsp1_rep	CDS	3870956	3871141	.	-	0	Parent=Os03t0172200-01
Chr03	irgsp1_rep	CDS	3869646	3869813	.	-	0	Parent=Os03t0172200-01
Chr03	irgsp1_rep	CDS	3869314	3869432	.	-	0	Parent=Os03t0172200-01
Chr03	irgsp1_rep	CDS	3869088	3869162	.	-	1	Parent=Os03t0172200-01
Chr03	irgsp1_rep	CDS	3868753	3868846	.	-	1	Parent=Os03t0172200-01
Chr03	irgsp1_rep	CDS	3868464	3868523	.	-	0	Parent=Os03t0172200-01
Chr03	irgsp1_rep	CDS	3868291	3868359	.	-	0	Parent=Os03t0172200-01
Chr03	irgsp1_rep	CDS	3868089	3868187	.	-	0	Parent=Os03t0172200-01
Chr03	irgsp1_rep	CDS	3867823	3867867	.	-	0	Parent=Os03t0172200-01
Chr03	irgsp1_rep	CDS	3867642	3867744	.	-	0	Parent=Os03t0172200-01
Chr03	irgsp1_rep	CDS	3867488	3867546	.	-	2	Parent=Os03t0172200-01
Chr03	irgsp1_rep	three_prime_UTR	3867253	3867487	.	-	.	Parent=Os03t0172200-01
Chr03	irgsp1_rep	mRNA	3874153	3874548	.	-	.	ID=Os03t0172400-00;Name=Os03t0172400-00;Locus_id=Os03g0172400;Note=Proteinase inhibitor I25%2C cystatin%2C conserved region domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001049119.1 (RefSeq);InterPro=Proteinase inhibitor I25%2C cystatin%2C conserved region (IPR020381);TENOR=Os03t0172400-00
Chr03	irgsp1_rep	CDS	3874153	3874548	.	-	0	Parent=Os03t0172400-00
Chr03	irgsp1_rep	mRNA	3889565	3890307	.	-	.	ID=Os03t0172700-01;Name=Os03t0172700-01;Locus_id=Os03g0172700;Note=Conserved hypothetical protein.;Transcript_evidence=AK111307 (DDBJ%2C Best hit);ORF_evidence=A2XD26 (UniProt);NIAS_FLcDNA=002-181-B10;Expression=AK111307;TENOR=Os03t0172700-01;KEGG=Os03t0172700-01
Chr03	irgsp1_rep	five_prime_UTR	3890255	3890307	.	-	.	Parent=Os03t0172700-01
Chr03	irgsp1_rep	CDS	3889871	3890254	.	-	0	Parent=Os03t0172700-01
Chr03	irgsp1_rep	three_prime_UTR	3889565	3889870	.	-	.	Parent=Os03t0172700-01
Chr03	irgsp1_rep	mRNA	3893027	3893580	.	-	.	ID=Os03t0172850-00;Name=Os03t0172850-00;Locus_id=Os03g0172850;Note=Proteinase inhibitor I25%2C cystatin%2C conserved region domain containing protein.;Transcript_evidence=EU961152 (DDBJ);ORF_evidence=B9FBK7 (UniProt);InterPro=Proteinase inhibitor I25%2C cystatin%2C conserved region (IPR020381);TENOR=Os03t0172850-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	3893047	3893580	.	-	0	Parent=Os03t0172850-00
Chr03	irgsp1_rep	three_prime_UTR	3893027	3893046	.	-	.	Parent=Os03t0172850-00
Chr03	irgsp1_rep	mRNA	3929685	3935653	.	-	.	ID=Os03t0173500-01;Name=Os03t0173500-01;Locus_id=Os03g0173500;Note=Similar to Kinase associated protein phosphatase.;Transcript_evidence=AK099854 (DDBJ%2C Best hit);ORF_evidence=O81444 (UniProt);NIAS_FLcDNA=J013110J04;Expression=AK099854;TENOR=Os03t0173500-01;KEGG=Os03t0173500-01
Chr03	irgsp1_rep	five_prime_UTR	3935059	3935653	.	-	.	Parent=Os03t0173500-01
Chr03	irgsp1_rep	CDS	3934670	3935058	.	-	0	Parent=Os03t0173500-01
Chr03	irgsp1_rep	CDS	3934342	3934477	.	-	1	Parent=Os03t0173500-01
Chr03	irgsp1_rep	CDS	3934058	3934063	.	-	0	Parent=Os03t0173500-01
Chr03	irgsp1_rep	three_prime_UTR	3933938	3934057	.	-	.	Parent=Os03t0173500-01
Chr03	irgsp1_rep	three_prime_UTR	3933605	3933649	.	-	.	Parent=Os03t0173500-01
Chr03	irgsp1_rep	three_prime_UTR	3932939	3933186	.	-	.	Parent=Os03t0173500-01
Chr03	irgsp1_rep	three_prime_UTR	3932802	3932866	.	-	.	Parent=Os03t0173500-01
Chr03	irgsp1_rep	three_prime_UTR	3931755	3931833	.	-	.	Parent=Os03t0173500-01
Chr03	irgsp1_rep	three_prime_UTR	3929685	3929969	.	-	.	Parent=Os03t0173500-01
Chr03	irgsp1_rep	mRNA	3931394	3935649	.	-	.	ID=Os03t0173500-02;Name=Os03t0173500-02;Locus_id=Os03g0173500;Note=Similar to Kinase associated protein phosphatase.;Transcript_evidence=AK065074 (DDBJ%2C Best hit);ORF_evidence=O81444 (UniProt);InterPro=Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J013001K11;TENOR=Os03t0173500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	3934504	3935649	.	-	.	Parent=Os03t0173500-02
Chr03	irgsp1_rep	CDS	3934342	3934503	.	-	0	Parent=Os03t0173500-02
Chr03	irgsp1_rep	CDS	3934058	3934063	.	-	0	Parent=Os03t0173500-02
Chr03	irgsp1_rep	three_prime_UTR	3933938	3934057	.	-	.	Parent=Os03t0173500-02
Chr03	irgsp1_rep	three_prime_UTR	3933605	3933649	.	-	.	Parent=Os03t0173500-02
Chr03	irgsp1_rep	three_prime_UTR	3932939	3933186	.	-	.	Parent=Os03t0173500-02
Chr03	irgsp1_rep	three_prime_UTR	3932802	3932866	.	-	.	Parent=Os03t0173500-02
Chr03	irgsp1_rep	three_prime_UTR	3931394	3931833	.	-	.	Parent=Os03t0173500-02
Chr03	irgsp1_rep	mRNA	3936681	3940818	.	-	.	ID=Os03t0173700-01;Name=Os03t0173700-01;Locus_id=Os03g0173700;Note=Domain of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK111195 (DDBJ%2C Best hit);ORF_evidence=Q10R27 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=002-178-C02;TENOR=Os03t0173700-01
Chr03	irgsp1_rep	five_prime_UTR	3940593	3940818	.	-	.	Parent=Os03t0173700-01
Chr03	irgsp1_rep	CDS	3939236	3940592	.	-	0	Parent=Os03t0173700-01
Chr03	irgsp1_rep	CDS	3938484	3938551	.	-	2	Parent=Os03t0173700-01
Chr03	irgsp1_rep	CDS	3938250	3938412	.	-	0	Parent=Os03t0173700-01
Chr03	irgsp1_rep	CDS	3938048	3938132	.	-	2	Parent=Os03t0173700-01
Chr03	irgsp1_rep	CDS	3937477	3937909	.	-	1	Parent=Os03t0173700-01
Chr03	irgsp1_rep	CDS	3936879	3936887	.	-	0	Parent=Os03t0173700-01
Chr03	irgsp1_rep	three_prime_UTR	3936681	3936878	.	-	.	Parent=Os03t0173700-01
Chr03	irgsp1_rep	mRNA	3936681	3940785	.	-	.	ID=Os03t0173700-02;Name=Os03t0173700-02;Locus_id=Os03g0173700;Note=Domain of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK101161 (DDBJ%2C Best hit);ORF_evidence=Q10R27 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=J033027P11;TENOR=Os03t0173700-02
Chr03	irgsp1_rep	five_prime_UTR	3940593	3940785	.	-	.	Parent=Os03t0173700-02
Chr03	irgsp1_rep	CDS	3939236	3940592	.	-	0	Parent=Os03t0173700-02
Chr03	irgsp1_rep	CDS	3938484	3938551	.	-	2	Parent=Os03t0173700-02
Chr03	irgsp1_rep	CDS	3938250	3938412	.	-	0	Parent=Os03t0173700-02
Chr03	irgsp1_rep	CDS	3938048	3938132	.	-	2	Parent=Os03t0173700-02
Chr03	irgsp1_rep	CDS	3937477	3937909	.	-	1	Parent=Os03t0173700-02
Chr03	irgsp1_rep	CDS	3936879	3936887	.	-	0	Parent=Os03t0173700-02
Chr03	irgsp1_rep	three_prime_UTR	3936681	3936878	.	-	.	Parent=Os03t0173700-02
Chr03	irgsp1_rep	mRNA	3961041	3966305	.	+	.	ID=Os03t0173900-01;Name=Os03t0173900-01;Locus_id=Os03g0173900;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK063978 (DDBJ%2C Best hit);ORF_evidence=B6T6D5 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=001-124-C08;Expression=AK063978;TENOR=Os03t0173900-01;KEGG=Os03t0173900-01
Chr03	irgsp1_rep	five_prime_UTR	3961041	3961147	.	+	.	Parent=Os03t0173900-01
Chr03	irgsp1_rep	five_prime_UTR	3962102	3962122	.	+	.	Parent=Os03t0173900-01
Chr03	irgsp1_rep	CDS	3962123	3962263	.	+	0	Parent=Os03t0173900-01
Chr03	irgsp1_rep	CDS	3962616	3962850	.	+	0	Parent=Os03t0173900-01
Chr03	irgsp1_rep	CDS	3963839	3963879	.	+	2	Parent=Os03t0173900-01
Chr03	irgsp1_rep	CDS	3964314	3964358	.	+	0	Parent=Os03t0173900-01
Chr03	irgsp1_rep	CDS	3965332	3965459	.	+	0	Parent=Os03t0173900-01
Chr03	irgsp1_rep	CDS	3965659	3965767	.	+	1	Parent=Os03t0173900-01
Chr03	irgsp1_rep	CDS	3965854	3965907	.	+	0	Parent=Os03t0173900-01
Chr03	irgsp1_rep	three_prime_UTR	3965908	3966305	.	+	.	Parent=Os03t0173900-01
Chr03	irgsp1_rep	mRNA	3970216	3974472	.	+	.	ID=Os03t0174100-01;Name=Os03t0174100-01;Locus_id=Os03g0174100;Note=Similar to RNA Binding Protein 45.;Transcript_evidence=AK065337 (DDBJ%2C Best hit);ORF_evidence=B6UA93 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013000M06;Expression=AK065337;TENOR=Os03t0174100-01;KEGG=Os03t0174100-01
Chr03	irgsp1_rep	five_prime_UTR	3970216	3970307	.	+	.	Parent=Os03t0174100-01
Chr03	irgsp1_rep	CDS	3970308	3970430	.	+	0	Parent=Os03t0174100-01
Chr03	irgsp1_rep	CDS	3971344	3971827	.	+	0	Parent=Os03t0174100-01
Chr03	irgsp1_rep	CDS	3972155	3972231	.	+	2	Parent=Os03t0174100-01
Chr03	irgsp1_rep	CDS	3972304	3972434	.	+	0	Parent=Os03t0174100-01
Chr03	irgsp1_rep	CDS	3973075	3973171	.	+	1	Parent=Os03t0174100-01
Chr03	irgsp1_rep	CDS	3973487	3973630	.	+	0	Parent=Os03t0174100-01
Chr03	irgsp1_rep	CDS	3973970	3974073	.	+	0	Parent=Os03t0174100-01
Chr03	irgsp1_rep	CDS	3974167	3974257	.	+	1	Parent=Os03t0174100-01
Chr03	irgsp1_rep	three_prime_UTR	3974258	3974472	.	+	.	Parent=Os03t0174100-01
Chr03	irgsp1_rep	mRNA	3970241	3974508	.	+	.	ID=Os03t0174100-02;Name=Os03t0174100-02;Locus_id=Os03g0174100;Note=Similar to RNA Binding Protein 45.;Transcript_evidence=AK104916 (DDBJ%2C Best hit);ORF_evidence=Q10R21 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-047-E08;Expression=AK104916;TENOR=Os03t0174100-02;KEGG=Os03t0174100-02
Chr03	irgsp1_rep	five_prime_UTR	3970241	3970307	.	+	.	Parent=Os03t0174100-02
Chr03	irgsp1_rep	CDS	3970308	3970430	.	+	0	Parent=Os03t0174100-02
Chr03	irgsp1_rep	CDS	3971344	3971827	.	+	0	Parent=Os03t0174100-02
Chr03	irgsp1_rep	CDS	3972155	3972231	.	+	2	Parent=Os03t0174100-02
Chr03	irgsp1_rep	CDS	3972304	3972434	.	+	0	Parent=Os03t0174100-02
Chr03	irgsp1_rep	CDS	3973075	3973171	.	+	1	Parent=Os03t0174100-02
Chr03	irgsp1_rep	CDS	3973487	3973630	.	+	0	Parent=Os03t0174100-02
Chr03	irgsp1_rep	CDS	3973970	3974073	.	+	0	Parent=Os03t0174100-02
Chr03	irgsp1_rep	CDS	3974167	3974257	.	+	1	Parent=Os03t0174100-02
Chr03	irgsp1_rep	three_prime_UTR	3974258	3974508	.	+	.	Parent=Os03t0174100-02
Chr03	irgsp1_rep	mRNA	3974957	3977413	.	+	.	ID=Os03t0174200-01;Name=Os03t0174200-01;Locus_id=Os03g0174200;Note=Conserved hypothetical protein.;Transcript_evidence=AK103762 (DDBJ%2C Best hit),AK060616 (DDBJ%2C Best hit);ORF_evidence=A2XD32 (UniProt);NIAS_FLcDNA=J033143G15,001-026-B08;TENOR=Os03t0174200-01
Chr03	irgsp1_rep	five_prime_UTR	3974957	3975121	.	+	.	Parent=Os03t0174200-01
Chr03	irgsp1_rep	CDS	3975122	3975284	.	+	0	Parent=Os03t0174200-01
Chr03	irgsp1_rep	CDS	3975475	3975530	.	+	2	Parent=Os03t0174200-01
Chr03	irgsp1_rep	CDS	3975611	3975675	.	+	0	Parent=Os03t0174200-01
Chr03	irgsp1_rep	CDS	3975773	3976219	.	+	1	Parent=Os03t0174200-01
Chr03	irgsp1_rep	CDS	3976315	3976440	.	+	1	Parent=Os03t0174200-01
Chr03	irgsp1_rep	CDS	3976541	3976724	.	+	1	Parent=Os03t0174200-01
Chr03	irgsp1_rep	CDS	3977001	3977156	.	+	0	Parent=Os03t0174200-01
Chr03	irgsp1_rep	three_prime_UTR	3977157	3977413	.	+	.	Parent=Os03t0174200-01
Chr03	irgsp1_rep	mRNA	3978668	3983475	.	+	.	ID=Os03t0174300-01;Name=Os03t0174300-01;Locus_id=Os03g0174300;Note=Exostosin-like family protein.;Transcript_evidence=AK067994 (DDBJ%2C Best hit);ORF_evidence=A5B050 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);NIAS_FLcDNA=J013123J15;Expression=AK067994;TENOR=Os03t0174300-01;KEGG=Os03t0174300-01
Chr03	irgsp1_rep	five_prime_UTR	3978668	3978934	.	+	.	Parent=Os03t0174300-01
Chr03	irgsp1_rep	five_prime_UTR	3979022	3979088	.	+	.	Parent=Os03t0174300-01
Chr03	irgsp1_rep	five_prime_UTR	3979172	3979503	.	+	.	Parent=Os03t0174300-01
Chr03	irgsp1_rep	five_prime_UTR	3979584	3979651	.	+	.	Parent=Os03t0174300-01
Chr03	irgsp1_rep	CDS	3979652	3979677	.	+	0	Parent=Os03t0174300-01
Chr03	irgsp1_rep	CDS	3980097	3980297	.	+	1	Parent=Os03t0174300-01
Chr03	irgsp1_rep	CDS	3980407	3980662	.	+	1	Parent=Os03t0174300-01
Chr03	irgsp1_rep	CDS	3980774	3980986	.	+	0	Parent=Os03t0174300-01
Chr03	irgsp1_rep	CDS	3981069	3981155	.	+	0	Parent=Os03t0174300-01
Chr03	irgsp1_rep	CDS	3981302	3981436	.	+	0	Parent=Os03t0174300-01
Chr03	irgsp1_rep	CDS	3981509	3981622	.	+	0	Parent=Os03t0174300-01
Chr03	irgsp1_rep	CDS	3981720	3981967	.	+	0	Parent=Os03t0174300-01
Chr03	irgsp1_rep	CDS	3982037	3982117	.	+	1	Parent=Os03t0174300-01
Chr03	irgsp1_rep	CDS	3982192	3982423	.	+	1	Parent=Os03t0174300-01
Chr03	irgsp1_rep	CDS	3982553	3982690	.	+	0	Parent=Os03t0174300-01
Chr03	irgsp1_rep	three_prime_UTR	3982691	3982914	.	+	.	Parent=Os03t0174300-01
Chr03	irgsp1_rep	three_prime_UTR	3983141	3983475	.	+	.	Parent=Os03t0174300-01
Chr03	irgsp1_rep	mRNA	3984892	3985856	.	+	.	ID=Os03t0174400-00;Name=Os03t0174400-00;Locus_id=Os03g0174400;CGSNL Gene Symbol=ERF41;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 41;Oryzabase Gene Symbol Synonym(s)=OsERF#041%2C OsERF041%2C OsERF41%2C AP2/EREBP#025%2C AP2/EREBP25%2C OsDREB2E;Oryzabase Gene Name Synonym(s)=ethylene response factor 41%2C APETALA2/ethylene-responsive element binding protein 25%2C dehydration-responsive element-binding protein 2E;Note=Hypothetical conserved gene.;Transcript_evidence=EF028768 (DDBJ);ORF_evidence=Q10R18 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);Oryzabase=10558;TENOR=Os03t0174400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	3984892	3984899	.	+	.	Parent=Os03t0174400-00
Chr03	irgsp1_rep	CDS	3984900	3985856	.	+	0	Parent=Os03t0174400-00
Chr03	irgsp1_rep	mRNA	3986852	3989994	.	-	.	ID=Os03t0174500-01;Name=Os03t0174500-01;Locus_id=Os03g0174500;CGSNL Gene Symbol=ADSS;CGSNL Gene Name=ADENYLOSUCCINATE SYNTHETASE;Oryzabase Gene Symbol Synonym(s)=OsAdSS%2C AdSS%2C ASS2%2C OsASS2;Oryzabase Gene Name Synonym(s)=adenylosuccinate synthetase%2C SAMP synthetase 2;Note=Similar to Adenylosuccinate synthetase%2C chloroplast precursor (EC 6.3.4.4) (IMP-- aspartate ligase) (AdSS) (AMPSase) (Fragment).;Transcript_evidence=AK066881 (DDBJ%2C Best hit);ORF_evidence=Q10R17 (UniProt);GO=Biological Process: purine nucleotide biosynthetic process (GO:0006164),Cellular Component: cytoplasm (GO:0005737),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: adenylosuccinate synthase activity (GO:0004019),Molecular Function: GTP binding (GO:0005525);InterPro=Adenylosuccinate synthetase (IPR001114),Adenylosuccinate synthase%2C active site (IPR018220);NIAS_FLcDNA=J013088J03;Oryzabase=22462;Expression=AK066881;TENOR=Os03t0174500-01;KEGG=Os03t0174500-01 (EC:6.3.4.4)
Chr03	irgsp1_rep	five_prime_UTR	3989977	3989994	.	-	.	Parent=Os03t0174500-01
Chr03	irgsp1_rep	CDS	3989686	3989976	.	-	0	Parent=Os03t0174500-01
Chr03	irgsp1_rep	CDS	3987819	3988511	.	-	0	Parent=Os03t0174500-01
Chr03	irgsp1_rep	CDS	3987428	3987739	.	-	0	Parent=Os03t0174500-01
Chr03	irgsp1_rep	CDS	3987026	3987196	.	-	0	Parent=Os03t0174500-01
Chr03	irgsp1_rep	three_prime_UTR	3986852	3987025	.	-	.	Parent=Os03t0174500-01
Chr03	irgsp1_rep	mRNA	3990111	3997757	.	+	.	ID=Os03t0174600-01;Name=Os03t0174600-01;Locus_id=Os03g0174600;Note=Rossmann-like alpha/beta/alpha sandwich fold domain containing protein.;Transcript_evidence=AK103276 (DDBJ%2C Best hit);ORF_evidence=B6U875 (UniProt);GO=Biological Process: tRNA processing (GO:0008033),Cellular Component: cytoplasm (GO:0005737),Molecular Function: transferase activity (GO:0016740),Molecular Function: sulfurtransferase activity (GO:0016783);InterPro=tRNA-specific 2-thiouridylase (IPR004506),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Adenine nucleotide alpha hydrolase-like domains (IPR023382);NIAS_FLcDNA=J033124K13;Expression=AK103276;TENOR=Os03t0174600-01;KEGG=Os03t0174600-01 (EC:2.8.1.-)
Chr03	irgsp1_rep	five_prime_UTR	3990111	3990202	.	+	.	Parent=Os03t0174600-01
Chr03	irgsp1_rep	CDS	3990203	3990544	.	+	0	Parent=Os03t0174600-01
Chr03	irgsp1_rep	CDS	3990628	3990702	.	+	0	Parent=Os03t0174600-01
Chr03	irgsp1_rep	CDS	3990821	3990874	.	+	0	Parent=Os03t0174600-01
Chr03	irgsp1_rep	CDS	3990960	3991038	.	+	0	Parent=Os03t0174600-01
Chr03	irgsp1_rep	CDS	3991140	3991267	.	+	2	Parent=Os03t0174600-01
Chr03	irgsp1_rep	CDS	3991391	3991474	.	+	0	Parent=Os03t0174600-01
Chr03	irgsp1_rep	CDS	3991557	3991640	.	+	0	Parent=Os03t0174600-01
Chr03	irgsp1_rep	CDS	3991731	3991882	.	+	0	Parent=Os03t0174600-01
Chr03	irgsp1_rep	CDS	3992023	3992173	.	+	1	Parent=Os03t0174600-01
Chr03	irgsp1_rep	CDS	3996956	3997273	.	+	0	Parent=Os03t0174600-01
Chr03	irgsp1_rep	three_prime_UTR	3997274	3997757	.	+	.	Parent=Os03t0174600-01
Chr03	irgsp1_rep	mRNA	3990819	3997812	.	+	.	ID=Os03t0174600-02;Name=Os03t0174600-02;Locus_id=Os03g0174600;Note=Similar to tRNA methyltransferase.;Transcript_evidence=AK059155 (DDBJ%2C Best hit);ORF_evidence=B6U875 (UniProt);GO=Biological Process: tRNA processing (GO:0008033),Cellular Component: cytoplasm (GO:0005737),Molecular Function: transferase activity (GO:0016740),Molecular Function: sulfurtransferase activity (GO:0016783);InterPro=tRNA-specific 2-thiouridylase (IPR004506),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Adenine nucleotide alpha hydrolase-like domains (IPR023382);NIAS_FLcDNA=001-023-C05;TENOR=Os03t0174600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	3990819	3990858	.	+	.	Parent=Os03t0174600-02
Chr03	irgsp1_rep	CDS	3990859	3990874	.	+	0	Parent=Os03t0174600-02
Chr03	irgsp1_rep	CDS	3991140	3991267	.	+	2	Parent=Os03t0174600-02
Chr03	irgsp1_rep	CDS	3991391	3991474	.	+	0	Parent=Os03t0174600-02
Chr03	irgsp1_rep	CDS	3991557	3991640	.	+	0	Parent=Os03t0174600-02
Chr03	irgsp1_rep	CDS	3991731	3991882	.	+	0	Parent=Os03t0174600-02
Chr03	irgsp1_rep	CDS	3992023	3992173	.	+	1	Parent=Os03t0174600-02
Chr03	irgsp1_rep	CDS	3996956	3997273	.	+	0	Parent=Os03t0174600-02
Chr03	irgsp1_rep	three_prime_UTR	3997274	3997812	.	+	.	Parent=Os03t0174600-02
Chr03	irgsp1_rep	mRNA	3999092	4000029	.	-	.	ID=Os03t0174800-01;Name=Os03t0174800-01;Locus_id=Os03g0174800;Note=Conserved hypothetical protein.;Transcript_evidence=AK069179 (DDBJ%2C Best hit);ORF_evidence=B9FBL5 (UniProt);NIAS_FLcDNA=J023009A03;TENOR=Os03t0174800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	3999713	4000029	.	-	.	Parent=Os03t0174800-01
Chr03	irgsp1_rep	CDS	3999479	3999712	.	-	0	Parent=Os03t0174800-01
Chr03	irgsp1_rep	three_prime_UTR	3999092	3999478	.	-	.	Parent=Os03t0174800-01
Chr03	irgsp1_rep	mRNA	4002089	4005420	.	-	.	ID=Os03t0174900-01;Name=Os03t0174900-01;Locus_id=Os03g0174900;CGSNL Gene Symbol=HAP2C;CGSNL Gene Name=HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX;Oryzabase Gene Symbol Synonym(s)=OsHAP2C%2C NF-YA%2C CBF-B%2C NF-YA1%2C OsNF-YA1%2C NFYA1;Oryzabase Gene Name Synonym(s)=NUCLEAR FACTOR-Y subunit A1%2C NUCLEAR FACTOR-Y subunit NF-YA1%2C NF-YA transcription factor 1%2C NF-YA subunit 1%2C NF-YA family 1;Note=Similar to RAPB protein.;Transcript_evidence=AK069348 (DDBJ%2C Best hit);ORF_evidence=O49915 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Cellular Component: CCAAT-binding factor complex (GO:0016602),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=CCAAT-binding transcription factor%2C subunit B (IPR001289),CCAAT-binding factor%2C conserved site (IPR018362);NIAS_FLcDNA=J023014B08;Oryzabase=8475;TENOR=Os03t0174900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	4005303	4005420	.	-	.	Parent=Os03t0174900-01
Chr03	irgsp1_rep	five_prime_UTR	4003712	4003936	.	-	.	Parent=Os03t0174900-01
Chr03	irgsp1_rep	CDS	4003529	4003711	.	-	0	Parent=Os03t0174900-01
Chr03	irgsp1_rep	CDS	4003371	4003439	.	-	0	Parent=Os03t0174900-01
Chr03	irgsp1_rep	CDS	4002754	4002924	.	-	0	Parent=Os03t0174900-01
Chr03	irgsp1_rep	CDS	4002371	4002577	.	-	0	Parent=Os03t0174900-01
Chr03	irgsp1_rep	three_prime_UTR	4002089	4002370	.	-	.	Parent=Os03t0174900-01
Chr03	irgsp1_rep	mRNA	4015428	4016017	.	+	.	ID=Os03t0175200-01;Name=Os03t0175200-01;Locus_id=Os03g0175200;Note=Similar to predicted protein.;Transcript_evidence=AK242803 (DDBJ%2C Best hit);ORF_evidence=NP_001147647.1 (RefSeq);InterPro=Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J090059M15;TENOR=Os03t0175200-01;KEGG=Os03t0175200-01
Chr03	irgsp1_rep	five_prime_UTR	4015428	4015429	.	+	.	Parent=Os03t0175200-01
Chr03	irgsp1_rep	CDS	4015430	4015684	.	+	0	Parent=Os03t0175200-01
Chr03	irgsp1_rep	three_prime_UTR	4015685	4016017	.	+	.	Parent=Os03t0175200-01
Chr03	irgsp1_rep	mRNA	4024383	4028509	.	+	.	ID=Os03t0175600-01;Name=Os03t0175600-01;Locus_id=Os03g0175600;CGSNL Gene Symbol=CPA2;CGSNL Gene Name=CARBAMOYLPUTRESCINE AMIDASE 2;Oryzabase Gene Symbol Synonym(s)=OsCPA2;Oryzabase Gene Name Synonym(s)=N-carbamoyl-Put amidohydrolase 2;Note=Similar to Nit protein 2 (CUA002).;Transcript_evidence=AK059981 (DDBJ%2C Best hit);ORF_evidence=NP_196765.2 (RefSeq);GO=Biological Process: nitrogen compound metabolic process (GO:0006807),Molecular Function: hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds (GO:0016810);InterPro=Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (IPR003010);NIAS_FLcDNA=006-212-E08;Oryzabase=21663;Expression=AK059981;TENOR=Os03t0175600-01;KEGG=Os03t0175600-01
Chr03	irgsp1_rep	five_prime_UTR	4024383	4024496	.	+	.	Parent=Os03t0175600-01
Chr03	irgsp1_rep	CDS	4024497	4024577	.	+	0	Parent=Os03t0175600-01
Chr03	irgsp1_rep	CDS	4024696	4024812	.	+	0	Parent=Os03t0175600-01
Chr03	irgsp1_rep	CDS	4025576	4025800	.	+	0	Parent=Os03t0175600-01
Chr03	irgsp1_rep	CDS	4026325	4026418	.	+	0	Parent=Os03t0175600-01
Chr03	irgsp1_rep	CDS	4026800	4026874	.	+	2	Parent=Os03t0175600-01
Chr03	irgsp1_rep	CDS	4027258	4027336	.	+	2	Parent=Os03t0175600-01
Chr03	irgsp1_rep	CDS	4027598	4027613	.	+	1	Parent=Os03t0175600-01
Chr03	irgsp1_rep	CDS	4027717	4027797	.	+	0	Parent=Os03t0175600-01
Chr03	irgsp1_rep	CDS	4028035	4028117	.	+	0	Parent=Os03t0175600-01
Chr03	irgsp1_rep	CDS	4028225	4028306	.	+	1	Parent=Os03t0175600-01
Chr03	irgsp1_rep	three_prime_UTR	4028307	4028509	.	+	.	Parent=Os03t0175600-01
Chr03	irgsp1_rep	mRNA	4038341	4039509	.	-	.	ID=Os03t0175800-01;Name=Os03t0175800-01;Locus_id=Os03g0175800;RAP-DB Gene Symbol Synonym(s)=BG1;RAP-DB Gene Name Synonym(s)=BIG GRAIN1%2C big grain1%2C big grain 1;CGSNL Gene Symbol=BG1;CGSNL Gene Name=BIG GRAIN1;Oryzabase Gene Symbol Synonym(s)=OsaBG1%2C OsBG1;Oryzabase Gene Name Synonym(s)=big grain1%2C big grain 1;Note=Positive regulator of auxin response and transport%2C Regulation of grain size;Transcript_evidence=AK109502;ORF_evidence=Q10R09;NIAS_FLcDNA=001-208-A02;Manual Curation=February 29%2C 2016;Literature_PMID=26283354;Oryzabase=19858;Expression=AK109502;TENOR=Os03t0175800-01;KEGG=Os03t0175800-01
Chr03	irgsp1_rep	five_prime_UTR	4039381	4039509	.	-	.	Parent=Os03t0175800-01
Chr03	irgsp1_rep	CDS	4038448	4039380	.	-	0	Parent=Os03t0175800-01
Chr03	irgsp1_rep	three_prime_UTR	4038341	4038447	.	-	.	Parent=Os03t0175800-01
Chr03	irgsp1_rep	mRNA	4047742	4050253	.	+	.	ID=Os03t0176100-00;Name=Os03t0176100-00;Locus_id=Os03g0176100;Note=Similar to predicted protein.;Transcript_evidence=AK330814 (DDBJ);ORF_evidence=NP_193766.1 (RefSeq);GO=Biological Process: transcription initiation from RNA polymerase II promoter (GO:0006367),Cellular Component: transcription factor TFIIE complex (GO:0005673);InterPro=Transcription factor TFIIE beta subunit%2C DNA-binding domain (IPR003166);TENOR=Os03t0176100-00;KEGG=Os03t0176100-00
Chr03	irgsp1_rep	five_prime_UTR	4047742	4047824	.	+	.	Parent=Os03t0176100-00
Chr03	irgsp1_rep	CDS	4048704	4048967	.	+	0	Parent=Os03t0176100-00
Chr03	irgsp1_rep	CDS	4049060	4049191	.	+	0	Parent=Os03t0176100-00
Chr03	irgsp1_rep	CDS	4049281	4049397	.	+	0	Parent=Os03t0176100-00
Chr03	irgsp1_rep	CDS	4049900	4050253	.	+	0	Parent=Os03t0176100-00
Chr03	irgsp1_rep	mRNA	4057213	4057661	.	+	.	ID=Os03t0176200-00;Name=Os03t0176200-00;Locus_id=Os03g0176200;Note=Hypothetical protein.;Transcript_evidence=EU949353 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0176200-00
Chr03	irgsp1_rep	five_prime_UTR	4057213	4057218	.	+	.	Parent=Os03t0176200-00
Chr03	irgsp1_rep	CDS	4057219	4057661	.	+	0	Parent=Os03t0176200-00
Chr03	irgsp1_rep	mRNA	4057561	4059890	.	-	.	ID=Os03t0176300-00;Name=Os03t0176300-00;Locus_id=Os03g0176300;CGSNL Gene Symbol=PLT10;CGSNL Gene Name=PLETHORA 10;Oryzabase Gene Symbol Synonym(s)=OsPLT10%2C AP2/EREBP26%2C AP2/EREBP#026;Oryzabase Gene Name Synonym(s)=Plethora 10%2C APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 26;Note=Hypothetical conserved gene.;Transcript_evidence=AY685115 (DDBJ%2C Best hit);ORF_evidence=B9FBM1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);Oryzabase=10472;TENOR=Os03t0176300-00
Chr03	irgsp1_rep	five_prime_UTR	4059890	4059890	.	-	.	Parent=Os03t0176300-00
Chr03	irgsp1_rep	CDS	4059858	4059889	.	-	0	Parent=Os03t0176300-00
Chr03	irgsp1_rep	CDS	4059694	4059776	.	-	1	Parent=Os03t0176300-00
Chr03	irgsp1_rep	CDS	4059542	4059550	.	-	2	Parent=Os03t0176300-00
Chr03	irgsp1_rep	CDS	4059328	4059416	.	-	2	Parent=Os03t0176300-00
Chr03	irgsp1_rep	CDS	4059051	4059124	.	-	0	Parent=Os03t0176300-00
Chr03	irgsp1_rep	CDS	4058644	4058694	.	-	1	Parent=Os03t0176300-00
Chr03	irgsp1_rep	CDS	4058385	4058461	.	-	1	Parent=Os03t0176300-00
Chr03	irgsp1_rep	CDS	4057561	4057657	.	-	2	Parent=Os03t0176300-00
Chr03	irgsp1_rep	mRNA	4066159	4067080	.	+	.	ID=Os03t0176500-01;Name=Os03t0176500-01;Locus_id=Os03g0176500;Note=Hypothetical protein.;Transcript_evidence=AK101385 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033036F11;Expression=AK101385;TENOR=Os03t0176500-01;KEGG=Os03t0176500-01
Chr03	irgsp1_rep	five_prime_UTR	4066159	4066347	.	+	.	Parent=Os03t0176500-01
Chr03	irgsp1_rep	CDS	4066348	4066650	.	+	0	Parent=Os03t0176500-01
Chr03	irgsp1_rep	three_prime_UTR	4066651	4067080	.	+	.	Parent=Os03t0176500-01
Chr03	irgsp1_rep	mRNA	4069860	4072360	.	-	.	ID=Os03t0176700-00;Name=Os03t0176700-00;Locus_id=Os03g0176700;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001173283.1 (RefSeq);TENOR=Os03t0176700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	4072189	4072360	.	-	0	Parent=Os03t0176700-00
Chr03	irgsp1_rep	CDS	4072016	4072052	.	-	2	Parent=Os03t0176700-00
Chr03	irgsp1_rep	CDS	4071819	4071889	.	-	1	Parent=Os03t0176700-00
Chr03	irgsp1_rep	CDS	4071183	4071277	.	-	2	Parent=Os03t0176700-00
Chr03	irgsp1_rep	CDS	4070325	4070392	.	-	0	Parent=Os03t0176700-00
Chr03	irgsp1_rep	CDS	4070094	4070204	.	-	1	Parent=Os03t0176700-00
Chr03	irgsp1_rep	CDS	4069860	4070001	.	-	1	Parent=Os03t0176700-00
Chr03	irgsp1_rep	mRNA	4073587	4077624	.	-	.	ID=Os03t0176800-01;Name=Os03t0176800-01;Locus_id=Os03g0176800;Oryzabase Gene Symbol Synonym(s)=OsSTA92;Note=Domain of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK103848 (DDBJ%2C Best hit);ORF_evidence=B8APR4 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=J033148K19;Oryzabase=19388;TENOR=Os03t0176800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	4077274	4077624	.	-	.	Parent=Os03t0176800-01
Chr03	irgsp1_rep	CDS	4076337	4077273	.	-	0	Parent=Os03t0176800-01
Chr03	irgsp1_rep	CDS	4075584	4075623	.	-	2	Parent=Os03t0176800-01
Chr03	irgsp1_rep	CDS	4075393	4075454	.	-	1	Parent=Os03t0176800-01
Chr03	irgsp1_rep	CDS	4074699	4074793	.	-	2	Parent=Os03t0176800-01
Chr03	irgsp1_rep	CDS	4074250	4074317	.	-	0	Parent=Os03t0176800-01
Chr03	irgsp1_rep	CDS	4074042	4074149	.	-	1	Parent=Os03t0176800-01
Chr03	irgsp1_rep	CDS	4073848	4073956	.	-	1	Parent=Os03t0176800-01
Chr03	irgsp1_rep	three_prime_UTR	4073587	4073847	.	-	.	Parent=Os03t0176800-01
Chr03	irgsp1_rep	mRNA	4079447	4080084	.	-	.	ID=Os03t0176900-01;Name=Os03t0176900-01;Locus_id=Os03g0176900;Note=Conserved hypothetical protein.;Transcript_evidence=AK073509 (DDBJ%2C Best hit);ORF_evidence=B8APR6 (UniProt);NIAS_FLcDNA=J033044N03;Expression=AK073509;TENOR=Os03t0176900-01;KEGG=Os03t0176900-01
Chr03	irgsp1_rep	five_prime_UTR	4079933	4080084	.	-	.	Parent=Os03t0176900-01
Chr03	irgsp1_rep	CDS	4079612	4079932	.	-	0	Parent=Os03t0176900-01
Chr03	irgsp1_rep	three_prime_UTR	4079447	4079611	.	-	.	Parent=Os03t0176900-01
Chr03	irgsp1_rep	mRNA	4081667	4085041	.	+	.	ID=Os03t0177000-01;Name=Os03t0177000-01;Locus_id=Os03g0177000;Note=Acyl-CoA N-acyltransferase domain containing protein.;Transcript_evidence=AK071368 (DDBJ%2C Best hit);ORF_evidence=NP_671784.2 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: N-acetyltransferase activity (GO:0008080);InterPro=GCN5-related N-acetyltransferase (GNAT) domain (IPR000182),Acyl-CoA N-acyltransferase (IPR016181);NIAS_FLcDNA=J023092E16;Expression=AK071368;TENOR=Os03t0177000-01;KEGG=Os03t0177000-01
Chr03	irgsp1_rep	five_prime_UTR	4081667	4081791	.	+	.	Parent=Os03t0177000-01
Chr03	irgsp1_rep	CDS	4081792	4081895	.	+	0	Parent=Os03t0177000-01
Chr03	irgsp1_rep	CDS	4082661	4082928	.	+	1	Parent=Os03t0177000-01
Chr03	irgsp1_rep	CDS	4083231	4083283	.	+	0	Parent=Os03t0177000-01
Chr03	irgsp1_rep	CDS	4083403	4083439	.	+	1	Parent=Os03t0177000-01
Chr03	irgsp1_rep	CDS	4083622	4083687	.	+	0	Parent=Os03t0177000-01
Chr03	irgsp1_rep	CDS	4084022	4084120	.	+	0	Parent=Os03t0177000-01
Chr03	irgsp1_rep	CDS	4084213	4084366	.	+	0	Parent=Os03t0177000-01
Chr03	irgsp1_rep	CDS	4084480	4084556	.	+	2	Parent=Os03t0177000-01
Chr03	irgsp1_rep	CDS	4084651	4084713	.	+	0	Parent=Os03t0177000-01
Chr03	irgsp1_rep	three_prime_UTR	4084714	4085041	.	+	.	Parent=Os03t0177000-01
Chr03	irgsp1_rep	mRNA	4087004	4089734	.	-	.	ID=Os03t0177100-01;Name=Os03t0177100-01;Locus_id=Os03g0177100;Note=Conserved hypothetical protein.;Transcript_evidence=AK068092 (DDBJ%2C Best hit);ORF_evidence=Q5QL13 (UniProt);NIAS_FLcDNA=J013131B21;TENOR=Os03t0177100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	4089156	4089734	.	-	0	Parent=Os03t0177100-01
Chr03	irgsp1_rep	three_prime_UTR	4087310	4089155	.	-	.	Parent=Os03t0177100-01
Chr03	irgsp1_rep	three_prime_UTR	4087004	4087245	.	-	.	Parent=Os03t0177100-01
Chr03	irgsp1_rep	mRNA	4090005	4093914	.	+	.	ID=Os03t0177300-01;Name=Os03t0177300-01;Locus_id=Os03g0177300;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK067953 (DDBJ%2C Best hit);ORF_evidence=B8APR8 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),E3 Ubiquitin ligase (IPR022170);NIAS_FLcDNA=J013128J19;Expression=AK067953;TENOR=Os03t0177300-01;KEGG=Os03t0177300-01
Chr03	irgsp1_rep	five_prime_UTR	4090005	4090118	.	+	.	Parent=Os03t0177300-01
Chr03	irgsp1_rep	CDS	4090119	4090454	.	+	0	Parent=Os03t0177300-01
Chr03	irgsp1_rep	CDS	4091814	4091915	.	+	0	Parent=Os03t0177300-01
Chr03	irgsp1_rep	CDS	4091998	4092162	.	+	0	Parent=Os03t0177300-01
Chr03	irgsp1_rep	CDS	4092255	4092376	.	+	0	Parent=Os03t0177300-01
Chr03	irgsp1_rep	CDS	4092570	4092689	.	+	1	Parent=Os03t0177300-01
Chr03	irgsp1_rep	CDS	4092858	4093149	.	+	1	Parent=Os03t0177300-01
Chr03	irgsp1_rep	three_prime_UTR	4093150	4093150	.	+	.	Parent=Os03t0177300-01
Chr03	irgsp1_rep	three_prime_UTR	4093541	4093914	.	+	.	Parent=Os03t0177300-01
Chr03	irgsp1_rep	mRNA	4094567	4097432	.	+	.	ID=Os03t0177400-01;Name=Os03t0177400-01;Locus_id=Os03g0177400;CGSNL Gene Symbol=RFA1;CGSNL Gene Name=ELONGATION FACTOR 1A1;Oryzabase Gene Symbol Synonym(s)=rfa1*%2C REFA1%2C refa1%2C OseEF-1A%2C eEF-1A%2C Osef1a1;Oryzabase Gene Name Synonym(s)=rice elongation factor 1A (eEFIA)-1%2C rice elongation factor 1A-1%2C ELONGATION FACTOR 1A%2C Elongation factor 1-alpha%2C EF-1-alpha%2C eukaryotic translation elongation factor 1A;Note=EF-1 alpha.;Transcript_evidence=AK105030 (DDBJ%2C Best hit),AK072648 (DDBJ%2C Best hit),AK119172 (DDBJ%2C Best hit);ORF_evidence=B8APM5 (UniProt);GO=Biological Process: translational elongation (GO:0006414),Cellular Component: cytoplasm (GO:0005737),Molecular Function: translation elongation factor activity (GO:0003746),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Protein synthesis factor%2C GTP-binding (IPR000795),Translation elongation factor EFTu/EF1A%2C C-terminal (IPR004160),Translation elongation factor EFTu/EF1A%2C domain 2 (IPR004161),Translation elongation factor EF1A%2C eukaryotic/archaeal (IPR004539),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Translation elongation factor EF1A/initiation factor IF2gamma%2C C-terminal (IPR009001);NIAS_FLcDNA=001-012-F06,J023126K23,001-037-A11;Oryzabase=2069;Expression=AK105030;TENOR=Os03t0177400-01;KEGG=Os03t0177400-01 (EC:3.6.5.3)
Chr03	irgsp1_rep	five_prime_UTR	4094567	4094639	.	+	.	Parent=Os03t0177400-01
Chr03	irgsp1_rep	five_prime_UTR	4095172	4095193	.	+	.	Parent=Os03t0177400-01
Chr03	irgsp1_rep	CDS	4095194	4095655	.	+	0	Parent=Os03t0177400-01
Chr03	irgsp1_rep	CDS	4096358	4097239	.	+	0	Parent=Os03t0177400-01
Chr03	irgsp1_rep	three_prime_UTR	4097240	4097432	.	+	.	Parent=Os03t0177400-01
Chr03	irgsp1_rep	mRNA	4095378	4097436	.	+	.	ID=Os03t0177400-02;Name=Os03t0177400-02;Locus_id=Os03g0177400;CGSNL Gene Symbol=RFA1;CGSNL Gene Name=ELONGATION FACTOR 1A1;Oryzabase Gene Symbol Synonym(s)=rfa1*%2C REFA1%2C refa1%2C OseEF-1A%2C eEF-1A%2C Osef1a1;Oryzabase Gene Name Synonym(s)=rice elongation factor 1A (eEFIA)-1%2C rice elongation factor 1A-1%2C ELONGATION FACTOR 1A%2C Elongation factor 1-alpha%2C EF-1-alpha%2C eukaryotic translation elongation factor 1A;Note=Similar to Elongation factor 1-alpha.;Transcript_evidence=AK062030 (DDBJ%2C Best hit);ORF_evidence=Q10QZ4 (UniProt);GO=Biological Process: translational elongation (GO:0006414),Cellular Component: cytoplasm (GO:0005737),Molecular Function: translation elongation factor activity (GO:0003746),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Protein synthesis factor%2C GTP-binding (IPR000795),Translation elongation factor EFTu/EF1A%2C C-terminal (IPR004160),Translation elongation factor EFTu/EF1A%2C domain 2 (IPR004161),Translation elongation factor EF1A%2C eukaryotic/archaeal (IPR004539),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Translation elongation factor EF1A/initiation factor IF2gamma%2C C-terminal (IPR009001);NIAS_FLcDNA=001-043-G10;Oryzabase=2069;Expression=AK062030;TENOR=Os03t0177400-02;KEGG=Os03t0177400-02 (EC:3.6.5.3)
Chr03	irgsp1_rep	five_prime_UTR	4095378	4095379	.	+	.	Parent=Os03t0177400-02
Chr03	irgsp1_rep	CDS	4095380	4095655	.	+	0	Parent=Os03t0177400-02
Chr03	irgsp1_rep	CDS	4096358	4097239	.	+	0	Parent=Os03t0177400-02
Chr03	irgsp1_rep	three_prime_UTR	4097240	4097436	.	+	.	Parent=Os03t0177400-02
Chr03	irgsp1_rep	mRNA	4099985	4102960	.	+	.	ID=Os03t0177500-01;Name=Os03t0177500-01;Locus_id=Os03g0177500;CGSNL Gene Symbol=RFA4;CGSNL Gene Name=ELONGATION FACTOR 1A4;Oryzabase Gene Symbol Synonym(s)=rfa4*%2C REFA4%2C refa4%2C eEF-1a%2C OsEF-1a%2C OsEF1A%2C EF1A%2C eIF-1-alpha;Oryzabase Gene Name Synonym(s)=rice elongation factor 1A (eEFIA)-4%2C rice elongation factor 1A-4%2C ELONGATION FACTOR 1A%2C Elongation factor 1-alpha%2C EF-1-alpha%2C Eukaryotic elongation factor 1-alpha%2C elongation factor 1 alpha;Note=EF-1 alpha.;Transcript_evidence=AK119537 (DDBJ%2C Best hit),AK061464 (DDBJ%2C Best hit);ORF_evidence=B8APM5 (UniProt);GO=Biological Process: translational elongation (GO:0006414),Cellular Component: cytoplasm (GO:0005737),Molecular Function: translation elongation factor activity (GO:0003746),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Protein synthesis factor%2C GTP-binding (IPR000795),Translation elongation factor EFTu/EF1A%2C C-terminal (IPR004160),Translation elongation factor EFTu/EF1A%2C domain 2 (IPR004161),Translation elongation factor EF1A%2C eukaryotic/archaeal (IPR004539),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Translation elongation factor EF1A/initiation factor IF2gamma%2C C-terminal (IPR009001);NIAS_FLcDNA=001-204-B11,006-308-C01;Oryzabase=2072;TENOR=Os03t0177500-01
Chr03	irgsp1_rep	five_prime_UTR	4099985	4100059	.	+	.	Parent=Os03t0177500-01
Chr03	irgsp1_rep	five_prime_UTR	4100719	4100740	.	+	.	Parent=Os03t0177500-01
Chr03	irgsp1_rep	CDS	4100741	4101202	.	+	0	Parent=Os03t0177500-01
Chr03	irgsp1_rep	CDS	4101798	4102679	.	+	0	Parent=Os03t0177500-01
Chr03	irgsp1_rep	three_prime_UTR	4102680	4102960	.	+	.	Parent=Os03t0177500-01
Chr03	irgsp1_rep	mRNA	4110375	4113589	.	+	.	ID=Os03t0177900-01;Name=Os03t0177900-01;Locus_id=Os03g0177900;CGSNL Gene Symbol=RFA3;CGSNL Gene Name=ELONGATION FACTOR 1A3;Oryzabase Gene Symbol Synonym(s)=rfa3*%2C REFA3%2C refa3;Oryzabase Gene Name Synonym(s)=rice elongation factor 1A (eEFIA)-3%2C rice elongation factor 1A-3%2C ELONGATION FACTOR 1A%2C Elongation factor 1-alpha%2C EF-1-alpha;Note=EF-1 alpha.;Transcript_evidence=AK119647 (DDBJ%2C Best hit),AK119528 (DDBJ%2C Best hit),AK071343 (DDBJ%2C Best hit);ORF_evidence=B8APM5 (UniProt);GO=Biological Process: translational elongation (GO:0006414),Cellular Component: cytoplasm (GO:0005737),Molecular Function: translation elongation factor activity (GO:0003746),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Protein synthesis factor%2C GTP-binding (IPR000795),Translation elongation factor EFTu/EF1A%2C C-terminal (IPR004160),Translation elongation factor EFTu/EF1A%2C domain 2 (IPR004161),Translation elongation factor EF1A%2C eukaryotic/archaeal (IPR004539),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Translation elongation factor EF1A/initiation factor IF2gamma%2C C-terminal (IPR009001);NIAS_FLcDNA=002-130-G07,001-203-C04,J023091A02;Oryzabase=2071;TENOR=Os03t0177900-01
Chr03	irgsp1_rep	five_prime_UTR	4110375	4110440	.	+	.	Parent=Os03t0177900-01
Chr03	irgsp1_rep	five_prime_UTR	4111387	4111408	.	+	.	Parent=Os03t0177900-01
Chr03	irgsp1_rep	CDS	4111409	4111870	.	+	0	Parent=Os03t0177900-01
Chr03	irgsp1_rep	CDS	4112480	4113361	.	+	0	Parent=Os03t0177900-01
Chr03	irgsp1_rep	three_prime_UTR	4113362	4113589	.	+	.	Parent=Os03t0177900-01
Chr03	irgsp1_rep	mRNA	4112478	4113592	.	+	.	ID=Os03t0177900-02;Name=Os03t0177900-02;Locus_id=Os03g0177900;CGSNL Gene Symbol=RFA3;CGSNL Gene Name=ELONGATION FACTOR 1A3;Oryzabase Gene Symbol Synonym(s)=rfa3*%2C REFA3%2C refa3;Oryzabase Gene Name Synonym(s)=rice elongation factor 1A (eEFIA)-3%2C rice elongation factor 1A-3%2C ELONGATION FACTOR 1A%2C Elongation factor 1-alpha%2C EF-1-alpha;Note=Similar to Elongation factor 1-alpha.;Transcript_evidence=AK119194 (DDBJ%2C Best hit);ORF_evidence=Q10QZ4 (UniProt);GO=Molecular Function: GTP binding (GO:0005525);InterPro=Translation elongation factor EFTu/EF1A%2C C-terminal (IPR004160),Translation elongation factor EFTu/EF1A%2C domain 2 (IPR004161),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Translation elongation factor EF1A/initiation factor IF2gamma%2C C-terminal (IPR009001);NIAS_FLcDNA=001-041-C03;Oryzabase=2071;TENOR=Os03t0177900-02;KEGG=Os03t0177900-02 (EC:3.6.5.3)
Chr03	irgsp1_rep	five_prime_UTR	4112478	4112479	.	+	.	Parent=Os03t0177900-02
Chr03	irgsp1_rep	CDS	4112480	4113361	.	+	0	Parent=Os03t0177900-02
Chr03	irgsp1_rep	three_prime_UTR	4113362	4113592	.	+	.	Parent=Os03t0177900-02
Chr03	irgsp1_rep	mRNA	4113497	4113701	.	+	.	ID=Os03t0177900-03;Name=Os03t0177900-03;Locus_id=Os03g0177900;CGSNL Gene Symbol=RFA3;CGSNL Gene Name=ELONGATION FACTOR 1A3;Oryzabase Gene Symbol Synonym(s)=rfa3*%2C REFA3%2C refa3;Oryzabase Gene Name Synonym(s)=rice elongation factor 1A (eEFIA)-3%2C rice elongation factor 1A-3%2C ELONGATION FACTOR 1A%2C Elongation factor 1-alpha%2C EF-1-alpha;Note=Non-protein coding transcript.;Transcript_evidence=AK058454 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-015-H06;Oryzabase=2071;TENOR=Os03t0177900-03
Chr03	irgsp1_rep	exon	4113497	4113701	.	+	.	Parent=Os03t0177900-03
Chr03	irgsp1_rep	mRNA	4116058	4118887	.	-	.	ID=Os03t0177966-01;Name=Os03t0177966-01;Locus_id=Os03g0177966;Note=Hypothetical gene.;Transcript_evidence=AK288933 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090082I18;TENOR=Os03t0177966-01;KEGG=Os03t0177966-01
Chr03	irgsp1_rep	five_prime_UTR	4118121	4118887	.	-	.	Parent=Os03t0177966-01
Chr03	irgsp1_rep	CDS	4117593	4118120	.	-	0	Parent=Os03t0177966-01
Chr03	irgsp1_rep	three_prime_UTR	4116058	4117592	.	-	.	Parent=Os03t0177966-01
Chr03	irgsp1_rep	mRNA	4116932	4119755	.	+	.	ID=Os03t0178000-01;Name=Os03t0178000-01;Locus_id=Os03g0178000;CGSNL Gene Symbol=RFA2;CGSNL Gene Name=ELONGATION FACTOR 1A2;Oryzabase Gene Symbol Synonym(s)=rfa2*%2C REFA2%2C refa2%2C OsEF1alpna%2C EF1alpna;Oryzabase Gene Name Synonym(s)=rice elongation factor 1A (eEFIA)-2%2C rice elongation factor 1A-2%2C ELONGATION FACTOR 1A%2C Elongation factor 1-alpha%2C EF-1-alpha;Note=EF-1 alpha.;Transcript_evidence=AK072285 (DDBJ%2C Best hit);ORF_evidence=B8APM5 (UniProt);GO=Biological Process: translational elongation (GO:0006414),Cellular Component: cytoplasm (GO:0005737),Molecular Function: translation elongation factor activity (GO:0003746),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Protein synthesis factor%2C GTP-binding (IPR000795),Translation elongation factor EFTu/EF1A%2C C-terminal (IPR004160),Translation elongation factor EFTu/EF1A%2C domain 2 (IPR004161),Translation elongation factor EF1A%2C eukaryotic/archaeal (IPR004539),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Translation elongation factor EF1A/initiation factor IF2gamma%2C C-terminal (IPR009001);NIAS_FLcDNA=J023016F09;Oryzabase=2070;TENOR=Os03t0178000-01;KEGG=Os03t0178000-01 (EC:3.6.5.3)
Chr03	irgsp1_rep	five_prime_UTR	4116932	4116987	.	+	.	Parent=Os03t0178000-01
Chr03	irgsp1_rep	five_prime_UTR	4117574	4117598	.	+	.	Parent=Os03t0178000-01
Chr03	irgsp1_rep	CDS	4117599	4118060	.	+	0	Parent=Os03t0178000-01
Chr03	irgsp1_rep	CDS	4118648	4119529	.	+	0	Parent=Os03t0178000-01
Chr03	irgsp1_rep	three_prime_UTR	4119530	4119755	.	+	.	Parent=Os03t0178000-01
Chr03	irgsp1_rep	mRNA	4116944	4119686	.	+	.	ID=Os03t0178000-02;Name=Os03t0178000-02;Locus_id=Os03g0178000;CGSNL Gene Symbol=RFA2;CGSNL Gene Name=ELONGATION FACTOR 1A2;Oryzabase Gene Symbol Synonym(s)=rfa2*%2C REFA2%2C refa2%2C OsEF1alpna%2C EF1alpna;Oryzabase Gene Name Synonym(s)=rice elongation factor 1A (eEFIA)-2%2C rice elongation factor 1A-2%2C ELONGATION FACTOR 1A%2C Elongation factor 1-alpha%2C EF-1-alpha;Note=EF-1 alpha.;Transcript_evidence=AK073196 (DDBJ%2C Best hit);ORF_evidence=B8APM5 (UniProt);GO=Biological Process: translational elongation (GO:0006414),Cellular Component: cytoplasm (GO:0005737),Molecular Function: translation elongation factor activity (GO:0003746),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Protein synthesis factor%2C GTP-binding (IPR000795),Translation elongation factor EFTu/EF1A%2C C-terminal (IPR004160),Translation elongation factor EFTu/EF1A%2C domain 2 (IPR004161),Translation elongation factor EF1A%2C eukaryotic/archaeal (IPR004539),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Translation elongation factor EF1A/initiation factor IF2gamma%2C C-terminal (IPR009001);NIAS_FLcDNA=J033024M04;Oryzabase=2070;TENOR=Os03t0178000-02;KEGG=Os03t0178000-02 (EC:3.6.5.3)
Chr03	irgsp1_rep	five_prime_UTR	4116944	4117598	.	+	.	Parent=Os03t0178000-02
Chr03	irgsp1_rep	CDS	4117599	4118060	.	+	0	Parent=Os03t0178000-02
Chr03	irgsp1_rep	CDS	4118648	4119529	.	+	0	Parent=Os03t0178000-02
Chr03	irgsp1_rep	three_prime_UTR	4119530	4119686	.	+	.	Parent=Os03t0178000-02
Chr03	irgsp1_rep	mRNA	4119985	4122323	.	+	.	ID=Os03t0178066-01;Name=Os03t0178066-01;Locus_id=Os03g0178066;Note=Hypothetical gene.;Transcript_evidence=AK243029 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100003G05;TENOR=Os03t0178066-01;KEGG=Os03t0178066-01
Chr03	irgsp1_rep	five_prime_UTR	4119985	4120485	.	+	.	Parent=Os03t0178066-01
Chr03	irgsp1_rep	five_prime_UTR	4120607	4120757	.	+	.	Parent=Os03t0178066-01
Chr03	irgsp1_rep	five_prime_UTR	4120842	4120973	.	+	.	Parent=Os03t0178066-01
Chr03	irgsp1_rep	five_prime_UTR	4121201	4121240	.	+	.	Parent=Os03t0178066-01
Chr03	irgsp1_rep	CDS	4121241	4121375	.	+	0	Parent=Os03t0178066-01
Chr03	irgsp1_rep	CDS	4121707	4121793	.	+	0	Parent=Os03t0178066-01
Chr03	irgsp1_rep	three_prime_UTR	4121794	4122158	.	+	.	Parent=Os03t0178066-01
Chr03	irgsp1_rep	three_prime_UTR	4122255	4122323	.	+	.	Parent=Os03t0178066-01
Chr03	irgsp1_rep	mRNA	4120367	4126939	.	-	.	ID=Os03t0178100-00;Name=Os03t0178100-00;Locus_id=Os03g0178100;CGSNL Gene Symbol=HMA8;CGSNL Gene Name=HEAVY METAL ATPASE 8;Oryzabase Gene Symbol Synonym(s)=OsHMA6%2C osHMA8%2C HMA6%2C OsHMP20%2C HMP20;Oryzabase Gene Name Synonym(s)=heavy metal ATPase 6%2C heavy metal ATPase 8%2C heavy metal P-Type ATPase 8%2C Heavy metal-associated protein 20;Note=Similar to Copper-translocating P-type ATPase family protein%2C expressed.;Transcript_evidence=AK333538 (DDBJ);ORF_evidence=Q10QZ3 (UniProt);GO=Biological Process: ATP biosynthetic process (GO:0006754),Biological Process: cation transport (GO:0006812),Biological Process: metabolic process (GO:0008152),Biological Process: metal ion transport (GO:0030001),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662),Molecular Function: metal ion binding (GO:0046872);InterPro=ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),Haloacid dehalogenase-like hydrolase (IPR005834),Heavy metal-associated domain%2C HMA (IPR006121),ATPase%2C P-type%2C heavy metal translocating (IPR006416),ATPase%2C P-type%2C ATPase-associated domain (IPR008250),Heavy-metal-associated%2C conserved site (IPR017969),ATPase%2C P-type phosphorylation site (IPR018303),HAD-like domain (IPR023214),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C  P-type%2C cytoplasmic transduction domain A (IPR023300);Oryzabase=13009;TENOR=Os03t0178100-00;KEGG=Os03t0178100-00
Chr03	irgsp1_rep	five_prime_UTR	4126934	4126939	.	-	.	Parent=Os03t0178100-00
Chr03	irgsp1_rep	CDS	4126279	4126933	.	-	0	Parent=Os03t0178100-00
Chr03	irgsp1_rep	CDS	4126033	4126110	.	-	2	Parent=Os03t0178100-00
Chr03	irgsp1_rep	CDS	4125314	4125411	.	-	2	Parent=Os03t0178100-00
Chr03	irgsp1_rep	CDS	4125187	4125240	.	-	0	Parent=Os03t0178100-00
Chr03	irgsp1_rep	CDS	4124852	4124938	.	-	0	Parent=Os03t0178100-00
Chr03	irgsp1_rep	CDS	4124476	4124640	.	-	0	Parent=Os03t0178100-00
Chr03	irgsp1_rep	CDS	4123874	4123984	.	-	0	Parent=Os03t0178100-00
Chr03	irgsp1_rep	CDS	4123346	4123414	.	-	0	Parent=Os03t0178100-00
Chr03	irgsp1_rep	CDS	4123137	4123246	.	-	0	Parent=Os03t0178100-00
Chr03	irgsp1_rep	CDS	4122922	4123027	.	-	1	Parent=Os03t0178100-00
Chr03	irgsp1_rep	CDS	4122555	4122621	.	-	0	Parent=Os03t0178100-00
Chr03	irgsp1_rep	CDS	4122255	4122334	.	-	2	Parent=Os03t0178100-00
Chr03	irgsp1_rep	CDS	4121707	4122158	.	-	0	Parent=Os03t0178100-00
Chr03	irgsp1_rep	CDS	4121201	4121375	.	-	1	Parent=Os03t0178100-00
Chr03	irgsp1_rep	CDS	4120842	4120973	.	-	0	Parent=Os03t0178100-00
Chr03	irgsp1_rep	CDS	4120607	4120757	.	-	0	Parent=Os03t0178100-00
Chr03	irgsp1_rep	CDS	4120367	4120485	.	-	2	Parent=Os03t0178100-00
Chr03	irgsp1_rep	mRNA	4126045	4126445	.	+	.	ID=Os03t0178150-00;Name=Os03t0178150-00;Locus_id=Os03g0178150;Note=Hypothetical gene.;Transcript_evidence=BT086892 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0178150-00
Chr03	irgsp1_rep	five_prime_UTR	4126045	4126064	.	+	.	Parent=Os03t0178150-00
Chr03	irgsp1_rep	CDS	4126065	4126109	.	+	0	Parent=Os03t0178150-00
Chr03	irgsp1_rep	CDS	4126278	4126445	.	+	0	Parent=Os03t0178150-00
Chr03	irgsp1_rep	mRNA	4129653	4131131	.	+	.	ID=Os03t0178200-01;Name=Os03t0178200-01;Locus_id=Os03g0178200;Note=Protein of unknown function YGGT family protein.;Transcript_evidence=AK106024 (DDBJ%2C Best hit);ORF_evidence=A6MZH3 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Uncharacterised protein family Ycf19 (IPR003425);NIAS_FLcDNA=001-206-C08;Expression=AK106024;TENOR=Os03t0178200-01;KEGG=Os03t0178200-01
Chr03	irgsp1_rep	five_prime_UTR	4129653	4129718	.	+	.	Parent=Os03t0178200-01
Chr03	irgsp1_rep	CDS	4129719	4129946	.	+	0	Parent=Os03t0178200-01
Chr03	irgsp1_rep	CDS	4130045	4130268	.	+	0	Parent=Os03t0178200-01
Chr03	irgsp1_rep	CDS	4130579	4130843	.	+	1	Parent=Os03t0178200-01
Chr03	irgsp1_rep	three_prime_UTR	4130844	4131131	.	+	.	Parent=Os03t0178200-01
Chr03	irgsp1_rep	mRNA	4129684	4131091	.	+	.	ID=Os03t0178200-02;Name=Os03t0178200-02;Locus_id=Os03g0178200;Note=Protein of unknown function YGGT family protein.;Transcript_evidence=AK060013 (DDBJ%2C Best hit),AK071755 (DDBJ%2C Best hit),AK106221 (DDBJ%2C Best hit);ORF_evidence=A6MZH3 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Uncharacterised protein family Ycf19 (IPR003425);NIAS_FLcDNA=006-302-E12,J023110G09,001-208-H08;Expression=AK060013;TENOR=Os03t0178200-02;KEGG=Os03t0178200-02
Chr03	irgsp1_rep	five_prime_UTR	4129684	4129718	.	+	.	Parent=Os03t0178200-02
Chr03	irgsp1_rep	CDS	4129719	4129946	.	+	0	Parent=Os03t0178200-02
Chr03	irgsp1_rep	CDS	4130045	4130268	.	+	0	Parent=Os03t0178200-02
Chr03	irgsp1_rep	CDS	4130579	4130843	.	+	1	Parent=Os03t0178200-02
Chr03	irgsp1_rep	three_prime_UTR	4130844	4131091	.	+	.	Parent=Os03t0178200-02
Chr03	irgsp1_rep	mRNA	4131128	4132544	.	-	.	ID=Os03t0178300-01;Name=Os03t0178300-01;Locus_id=Os03g0178300;Note=Hypothetical conserved gene.;Transcript_evidence=AK121217 (DDBJ%2C Best hit);ORF_evidence=A2XD59 (UniProt);NIAS_FLcDNA=J023090C05;Expression=AK121217;TENOR=Os03t0178300-01;KEGG=Os03t0178300-01
Chr03	irgsp1_rep	five_prime_UTR	4132533	4132544	.	-	.	Parent=Os03t0178300-01
Chr03	irgsp1_rep	CDS	4131756	4132532	.	-	0	Parent=Os03t0178300-01
Chr03	irgsp1_rep	three_prime_UTR	4131128	4131755	.	-	.	Parent=Os03t0178300-01
Chr03	irgsp1_rep	mRNA	4133458	4136490	.	-	.	ID=Os03t0178400-01;Name=Os03t0178400-01;Locus_id=Os03g0178400;Note=Alpha/beta hydrolase fold-1 domain containing protein.;Transcript_evidence=AK108257 (DDBJ%2C Best hit);ORF_evidence=NP_001152422.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Alpha/beta hydrolase fold-1 (IPR000073),Epoxide hydrolase-like (IPR000639);NIAS_FLcDNA=002-141-A10;Expression=AK108257;TENOR=Os03t0178400-01;KEGG=Os03t0178400-01
Chr03	irgsp1_rep	five_prime_UTR	4136452	4136490	.	-	.	Parent=Os03t0178400-01
Chr03	irgsp1_rep	CDS	4135777	4136451	.	-	0	Parent=Os03t0178400-01
Chr03	irgsp1_rep	CDS	4134007	4134099	.	-	0	Parent=Os03t0178400-01
Chr03	irgsp1_rep	CDS	4133849	4133916	.	-	0	Parent=Os03t0178400-01
Chr03	irgsp1_rep	CDS	4133605	4133755	.	-	1	Parent=Os03t0178400-01
Chr03	irgsp1_rep	three_prime_UTR	4133458	4133604	.	-	.	Parent=Os03t0178400-01
Chr03	irgsp1_rep	mRNA	4136960	4142715	.	-	.	ID=Os03t0178500-01;Name=Os03t0178500-01;Locus_id=Os03g0178500;Note=Alpha/beta hydrolase family protein.;Transcript_evidence=AK109678 (DDBJ%2C Best hit);ORF_evidence=NP_001152530.1 (RefSeq);InterPro=Alpha/beta hydrolase fold-1 (IPR000073);NIAS_FLcDNA=002-145-C05;Expression=AK109678;TENOR=Os03t0178500-01;KEGG=Os03t0178500-01
Chr03	irgsp1_rep	five_prime_UTR	4142683	4142715	.	-	.	Parent=Os03t0178500-01
Chr03	irgsp1_rep	CDS	4141969	4142682	.	-	0	Parent=Os03t0178500-01
Chr03	irgsp1_rep	CDS	4138388	4138483	.	-	0	Parent=Os03t0178500-01
Chr03	irgsp1_rep	CDS	4137520	4137587	.	-	0	Parent=Os03t0178500-01
Chr03	irgsp1_rep	CDS	4137281	4137395	.	-	1	Parent=Os03t0178500-01
Chr03	irgsp1_rep	three_prime_UTR	4136960	4137280	.	-	.	Parent=Os03t0178500-01
Chr03	irgsp1_rep	mRNA	4141936	4143332	.	+	.	ID=Os03t0178550-01;Name=Os03t0178550-01;Locus_id=Os03g0178550;Note=Hypothetical gene.;Transcript_evidence=AK289159 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100001P13;TENOR=Os03t0178550-01;KEGG=Os03t0178550-01
Chr03	irgsp1_rep	five_prime_UTR	4141936	4142524	.	+	.	Parent=Os03t0178550-01
Chr03	irgsp1_rep	CDS	4142525	4142785	.	+	0	Parent=Os03t0178550-01
Chr03	irgsp1_rep	three_prime_UTR	4142786	4143332	.	+	.	Parent=Os03t0178550-01
Chr03	irgsp1_rep	mRNA	4144020	4144383	.	-	.	ID=Os03t0178600-01;Name=Os03t0178600-01;Locus_id=Os03g0178600;Note=Non-protein coding transcript.;Transcript_evidence=AK058677 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-018-H09;TENOR=Os03t0178600-01
Chr03	irgsp1_rep	exon	4144020	4144383	.	-	.	Parent=Os03t0178600-01
Chr03	irgsp1_rep	mRNA	4150750	4157411	.	+	.	ID=Os03t0179000-01;Name=Os03t0179000-01;Locus_id=Os03g0179000;Note=Similar to Tubulin-tyrosine ligase family protein%2C expressed.;Transcript_evidence=AK069518 (DDBJ%2C Best hit);ORF_evidence=Q10QY3 (UniProt);GO=Biological Process: protein modification process (GO:0006464),Molecular Function: tubulin-tyrosine ligase activity (GO:0004835);InterPro=Tubulin-tyrosine ligase (IPR004344);NIAS_FLcDNA=J023024A16;Expression=AK069518;TENOR=Os03t0179000-01;KEGG=Os03t0179000-01
Chr03	irgsp1_rep	five_prime_UTR	4150750	4150842	.	+	.	Parent=Os03t0179000-01
Chr03	irgsp1_rep	CDS	4150843	4151136	.	+	0	Parent=Os03t0179000-01
Chr03	irgsp1_rep	CDS	4151727	4151984	.	+	0	Parent=Os03t0179000-01
Chr03	irgsp1_rep	CDS	4152338	4152462	.	+	0	Parent=Os03t0179000-01
Chr03	irgsp1_rep	CDS	4153002	4153203	.	+	1	Parent=Os03t0179000-01
Chr03	irgsp1_rep	CDS	4153385	4153510	.	+	0	Parent=Os03t0179000-01
Chr03	irgsp1_rep	CDS	4153617	4153873	.	+	0	Parent=Os03t0179000-01
Chr03	irgsp1_rep	CDS	4154181	4154288	.	+	1	Parent=Os03t0179000-01
Chr03	irgsp1_rep	CDS	4154355	4154494	.	+	1	Parent=Os03t0179000-01
Chr03	irgsp1_rep	CDS	4154589	4154756	.	+	2	Parent=Os03t0179000-01
Chr03	irgsp1_rep	CDS	4155180	4155337	.	+	2	Parent=Os03t0179000-01
Chr03	irgsp1_rep	CDS	4155469	4155792	.	+	0	Parent=Os03t0179000-01
Chr03	irgsp1_rep	CDS	4155896	4155970	.	+	0	Parent=Os03t0179000-01
Chr03	irgsp1_rep	CDS	4156306	4156428	.	+	0	Parent=Os03t0179000-01
Chr03	irgsp1_rep	three_prime_UTR	4156429	4156598	.	+	.	Parent=Os03t0179000-01
Chr03	irgsp1_rep	three_prime_UTR	4157085	4157411	.	+	.	Parent=Os03t0179000-01
Chr03	irgsp1_rep	mRNA	4157591	4158512	.	+	.	ID=Os03t0179100-00;Name=Os03t0179100-00;Locus_id=Os03g0179100;CGSNL Gene Symbol=GLP3-1;CGSNL Gene Name=GERMIN-LIKE PROTEIN 3-1;Oryzabase Gene Symbol Synonym(s)=OsGLP3-1;Oryzabase Gene Name Synonym(s)=Germin-like protein 3-1;Note=Similar to predicted protein.;Transcript_evidence=CT835279 (DDBJ%2C Best hit);ORF_evidence=Q8H021 (UniProt);GO=Cellular Component: apoplast (GO:0048046),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710);Oryzabase=21423;TENOR=Os03t0179100-00;KEGG=Os03t0179100-00
Chr03	irgsp1_rep	five_prime_UTR	4157591	4157669	.	+	.	Parent=Os03t0179100-00
Chr03	irgsp1_rep	CDS	4157670	4158347	.	+	0	Parent=Os03t0179100-00
Chr03	irgsp1_rep	three_prime_UTR	4158348	4158512	.	+	.	Parent=Os03t0179100-00
Chr03	irgsp1_rep	mRNA	4161347	4163473	.	+	.	ID=Os03t0179200-01;Name=Os03t0179200-01;Locus_id=Os03g0179200;Note=Conserved hypothetical protein.;Transcript_evidence=AK242281 (DDBJ%2C Best hit);ORF_evidence=B8APN2 (UniProt);NIAS_FLcDNA=J075189D01;TENOR=Os03t0179200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	4161347	4161551	.	+	.	Parent=Os03t0179200-01
Chr03	irgsp1_rep	CDS	4161552	4161953	.	+	0	Parent=Os03t0179200-01
Chr03	irgsp1_rep	three_prime_UTR	4161954	4163473	.	+	.	Parent=Os03t0179200-01
Chr03	irgsp1_rep	mRNA	4173178	4179068	.	+	.	ID=Os03t0179400-01;Name=Os03t0179400-01;Locus_id=Os03g0179400;RAP-DB Gene Symbol Synonym(s)=RLCK103%2C GUDK%2C OsRLCK103;RAP-DB Gene Name Synonym(s)=RECEPTOR-LIKE CYTOPLASMIC KINASE 103%2C GROWTH UNDER DROUGHT KINASE%2C Receptor-like Cytoplasmic Kinase 103;CGSNL Gene Symbol=RLCK103;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 103;Oryzabase Gene Symbol Synonym(s)=GUDK%2C OsRLCK103;Oryzabase Gene Name Synonym(s)=GROWTH UNDER DROUGHT KINASE%2C Receptor-like Cytoplasmic Kinase 103;Note=Drought-inducible receptor-like cytoplasmic kinase%2C Drought tolerance%2C Regulator of grain yield;Transcript_evidence=AK107046;ORF_evidence=Q10QY0;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase domain (IPR013320),Protein kinase domain (IPR000719),Serine-threonine/tyrosine-protein kinase catalytic domain (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=002-121-C09;Manual Curation=November 17%2C 2014;Literature_PMID=25209982;Oryzabase=18557;TENOR=Os03t0179400-01;KEGG=Os03t0179400-01
Chr03	irgsp1_rep	five_prime_UTR	4173178	4173432	.	+	.	Parent=Os03t0179400-01
Chr03	irgsp1_rep	CDS	4173433	4173855	.	+	0	Parent=Os03t0179400-01
Chr03	irgsp1_rep	CDS	4175243	4175378	.	+	0	Parent=Os03t0179400-01
Chr03	irgsp1_rep	CDS	4176591	4176727	.	+	2	Parent=Os03t0179400-01
Chr03	irgsp1_rep	CDS	4177722	4177845	.	+	0	Parent=Os03t0179400-01
Chr03	irgsp1_rep	CDS	4178324	4178781	.	+	2	Parent=Os03t0179400-01
Chr03	irgsp1_rep	three_prime_UTR	4178782	4179068	.	+	.	Parent=Os03t0179400-01
Chr03	irgsp1_rep	mRNA	4181381	4182557	.	-	.	ID=Os03t0179700-00;Name=Os03t0179700-00;Locus_id=Os03g0179700;Note=Similar to OSIGBa0140O07.11 protein.;Transcript_evidence=CT835157 (DDBJ%2C Best hit);ORF_evidence=Q01J32 (UniProt);InterPro=Tubby%2C C-terminal (IPR000007),Protein of unknown function DUF567 (IPR007612);TENOR=Os03t0179700-00;KEGG=Os03t0179700-00
Chr03	irgsp1_rep	five_prime_UTR	4182487	4182557	.	-	.	Parent=Os03t0179700-00
Chr03	irgsp1_rep	CDS	4182253	4182486	.	-	0	Parent=Os03t0179700-00
Chr03	irgsp1_rep	CDS	4181907	4182149	.	-	0	Parent=Os03t0179700-00
Chr03	irgsp1_rep	CDS	4181662	4181793	.	-	0	Parent=Os03t0179700-00
Chr03	irgsp1_rep	three_prime_UTR	4181381	4181661	.	-	.	Parent=Os03t0179700-00
Chr03	irgsp1_rep	mRNA	4186865	4188444	.	-	.	ID=Os03t0179750-01;Name=Os03t0179750-01;Locus_id=Os03g0179750;Note=Hypothetical gene.;Transcript_evidence=AK287533 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065003J22;TENOR=Os03t0179750-01;KEGG=Os03t0179750-01
Chr03	irgsp1_rep	five_prime_UTR	4188273	4188444	.	-	.	Parent=Os03t0179750-01
Chr03	irgsp1_rep	five_prime_UTR	4187710	4187958	.	-	.	Parent=Os03t0179750-01
Chr03	irgsp1_rep	CDS	4187272	4187709	.	-	0	Parent=Os03t0179750-01
Chr03	irgsp1_rep	three_prime_UTR	4186865	4187271	.	-	.	Parent=Os03t0179750-01
Chr03	irgsp1_rep	mRNA	4187158	4193200	.	+	.	ID=Os03t0179900-01;Name=Os03t0179900-01;Locus_id=Os03g0179900;CGSNL Gene Symbol=LOX2;CGSNL Gene Name=LIPOXYGENASE 2;Oryzabase Gene Symbol Synonym(s)=OsLOX2;Oryzabase Gene Name Synonym(s)=lipoxygenase 2;Note=Similar to Avr9/Cf-9 rapidly elicited protein 44 (Fragment).;Transcript_evidence=AK121637 (DDBJ%2C Best hit);ORF_evidence=A2XD68 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: protein binding (GO:0005515),Molecular Function: lipoxygenase activity (GO:0016165),Molecular Function: oxidoreductase activity%2C acting on single donors with incorporation of molecular oxygen%2C incorporation of two atoms of oxygen (GO:0016702),Molecular Function: metal ion binding (GO:0046872);InterPro=Lipoxygenase (IPR000907),Lipoxygenase%2C LH2 (IPR001024),Lipoxygenase%2C plant (IPR001246),Lipase/lipooxygenase%2C PLAT/LH2 (IPR008976),Lipoxygenase%2C C-terminal (IPR013819),Lipoxygenase%2C iron binding site (IPR020833),Lipoxygenase%2C conserved site (IPR020834);NIAS_FLcDNA=J033052A03;Oryzabase=10388;Expression=AK121637;TENOR=Os03t0179900-01;KEGG=Os03t0179900-01 (EC:1.13.11.12)
Chr03	irgsp1_rep	five_prime_UTR	4187158	4187356	.	+	.	Parent=Os03t0179900-01
Chr03	irgsp1_rep	CDS	4187357	4187729	.	+	0	Parent=Os03t0179900-01
Chr03	irgsp1_rep	CDS	4188575	4188861	.	+	2	Parent=Os03t0179900-01
Chr03	irgsp1_rep	CDS	4189552	4189789	.	+	0	Parent=Os03t0179900-01
Chr03	irgsp1_rep	CDS	4190686	4191009	.	+	2	Parent=Os03t0179900-01
Chr03	irgsp1_rep	CDS	4191127	4191212	.	+	2	Parent=Os03t0179900-01
Chr03	irgsp1_rep	CDS	4191337	4191444	.	+	0	Parent=Os03t0179900-01
Chr03	irgsp1_rep	CDS	4191528	4191832	.	+	0	Parent=Os03t0179900-01
Chr03	irgsp1_rep	CDS	4191946	4192209	.	+	1	Parent=Os03t0179900-01
Chr03	irgsp1_rep	CDS	4192319	4193090	.	+	1	Parent=Os03t0179900-01
Chr03	irgsp1_rep	three_prime_UTR	4193091	4193200	.	+	.	Parent=Os03t0179900-01
Chr03	irgsp1_rep	mRNA	4191747	4193180	.	+	.	ID=Os03t0179900-02;Name=Os03t0179900-02;Locus_id=Os03g0179900;CGSNL Gene Symbol=LOX2;CGSNL Gene Name=LIPOXYGENASE 2;Oryzabase Gene Symbol Synonym(s)=OsLOX2;Oryzabase Gene Name Synonym(s)=lipoxygenase 2;Note=Similar to Lipoxygenase.;Transcript_evidence=AK109440 (DDBJ%2C Best hit);ORF_evidence=A2XD68 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on single donors with incorporation of molecular oxygen%2C incorporation of two atoms of oxygen (GO:0016702),Molecular Function: metal ion binding (GO:0046872);InterPro=Lipoxygenase (IPR000907),Lipoxygenase%2C C-terminal (IPR013819),Lipoxygenase%2C iron binding site (IPR020833),Lipoxygenase%2C conserved site (IPR020834);NIAS_FLcDNA=006-311-A07;Oryzabase=10388;Expression=AK109440;TENOR=Os03t0179900-02;KEGG=Os03t0179900-02 (EC:1.13.11.12)
Chr03	irgsp1_rep	CDS	4191747	4191832	.	+	0	Parent=Os03t0179900-02
Chr03	irgsp1_rep	CDS	4191946	4192209	.	+	1	Parent=Os03t0179900-02
Chr03	irgsp1_rep	CDS	4192319	4193090	.	+	1	Parent=Os03t0179900-02
Chr03	irgsp1_rep	three_prime_UTR	4193091	4193180	.	+	.	Parent=Os03t0179900-02
Chr03	irgsp1_rep	mRNA	4193294	4193538	.	+	.	ID=Os03t0179950-00;Name=Os03t0179950-00;Locus_id=Os03g0179950;Note=Non-protein coding transcript.;Transcript_evidence=CT835230 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os03t0179950-00
Chr03	irgsp1_rep	exon	4193294	4193538	.	+	.	Parent=Os03t0179950-00
Chr03	irgsp1_rep	mRNA	4194372	4196475	.	-	.	ID=Os03t0180000-00;Name=Os03t0180000-00;Locus_id=Os03g0180000;CGSNL Gene Symbol=CCX1;CGSNL Gene Name=CATION/CA2+ EXCHANGER 1;Oryzabase Gene Symbol Synonym(s)=OsCCX1%2C OsNCX6%2C NCX6;Oryzabase Gene Name Synonym(s)=cation/Ca2+ exchanger 1%2C Na+/Ca2+ Exchanger 6%2C Sodium/calcium exchanger 6;Note=Sodium/calcium exchanger membrane region domain containing protein.;Transcript_evidence=AK360521 (DDBJ);ORF_evidence=NP_564650.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Sodium/calcium exchanger membrane region (IPR004837);Oryzabase=15457;TENOR=Os03t0180000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	4196310	4196475	.	-	.	Parent=Os03t0180000-00
Chr03	irgsp1_rep	CDS	4194390	4196309	.	-	0	Parent=Os03t0180000-00
Chr03	irgsp1_rep	three_prime_UTR	4194372	4194389	.	-	.	Parent=Os03t0180000-00
Chr03	irgsp1_rep	mRNA	4199851	4200735	.	-	.	ID=Os03t0180100-01;Name=Os03t0180100-01;Locus_id=Os03g0180100;Note=Protein of unknown function DUF1677%2C plant domain containing protein.;Transcript_evidence=AK108326 (DDBJ%2C Best hit);ORF_evidence=B8APN4 (UniProt);InterPro=Protein of unknown function DUF1677%2C plant (IPR012876);NIAS_FLcDNA=002-141-H07;TENOR=Os03t0180100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	4200112	4200735	.	-	0	Parent=Os03t0180100-01
Chr03	irgsp1_rep	three_prime_UTR	4199851	4200111	.	-	.	Parent=Os03t0180100-01
Chr03	irgsp1_rep	mRNA	4203524	4210236	.	+	.	ID=Os03t0180300-01;Name=Os03t0180300-01;Locus_id=Os03g0180300;Note=Similar to Ataxin-2 C-terminal region family protein%2C expressed.;Transcript_evidence=AK070967 (DDBJ%2C Best hit);ORF_evidence=Q10QX0 (UniProt);InterPro=Smr protein/MutS2 C-terminal (IPR002625),Ataxin-2%2C C-terminal (IPR009818);NIAS_FLcDNA=J023067F09;TENOR=Os03t0180300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	4203524	4205547	.	+	.	Parent=Os03t0180300-01
Chr03	irgsp1_rep	CDS	4205548	4206145	.	+	0	Parent=Os03t0180300-01
Chr03	irgsp1_rep	CDS	4206222	4206307	.	+	2	Parent=Os03t0180300-01
Chr03	irgsp1_rep	CDS	4207833	4208223	.	+	0	Parent=Os03t0180300-01
Chr03	irgsp1_rep	CDS	4208315	4208385	.	+	2	Parent=Os03t0180300-01
Chr03	irgsp1_rep	CDS	4208951	4209069	.	+	0	Parent=Os03t0180300-01
Chr03	irgsp1_rep	CDS	4209730	4210006	.	+	1	Parent=Os03t0180300-01
Chr03	irgsp1_rep	three_prime_UTR	4210007	4210236	.	+	.	Parent=Os03t0180300-01
Chr03	irgsp1_rep	mRNA	4203530	4210234	.	+	.	ID=Os03t0180300-02;Name=Os03t0180300-02;Locus_id=Os03g0180300;Note=Similar to Ataxin-2 C-terminal region family protein%2C expressed.;Transcript_evidence=AK068487 (DDBJ%2C Best hit);ORF_evidence=Q10QX0 (UniProt);InterPro=Smr protein/MutS2 C-terminal (IPR002625),Ataxin-2%2C C-terminal (IPR009818);NIAS_FLcDNA=J013156N12;TENOR=Os03t0180300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	4203530	4203803	.	+	.	Parent=Os03t0180300-02
Chr03	irgsp1_rep	five_prime_UTR	4204229	4204304	.	+	.	Parent=Os03t0180300-02
Chr03	irgsp1_rep	five_prime_UTR	4205500	4205547	.	+	.	Parent=Os03t0180300-02
Chr03	irgsp1_rep	CDS	4205548	4206145	.	+	0	Parent=Os03t0180300-02
Chr03	irgsp1_rep	CDS	4206222	4206307	.	+	2	Parent=Os03t0180300-02
Chr03	irgsp1_rep	CDS	4207833	4208223	.	+	0	Parent=Os03t0180300-02
Chr03	irgsp1_rep	CDS	4208315	4208385	.	+	2	Parent=Os03t0180300-02
Chr03	irgsp1_rep	CDS	4208951	4209069	.	+	0	Parent=Os03t0180300-02
Chr03	irgsp1_rep	CDS	4209730	4210006	.	+	1	Parent=Os03t0180300-02
Chr03	irgsp1_rep	three_prime_UTR	4210007	4210234	.	+	.	Parent=Os03t0180300-02
Chr03	irgsp1_rep	mRNA	4207312	4210236	.	+	.	ID=Os03t0180300-03;Name=Os03t0180300-03;Locus_id=Os03g0180300;Note=Hypothetical conserved gene.;Transcript_evidence=AK060766 (DDBJ%2C Best hit);ORF_evidence=Q10QX0 (UniProt);InterPro=Smr protein/MutS2 C-terminal (IPR002625);NIAS_FLcDNA=001-033-A09;Expression=AK060766;TENOR=Os03t0180300-03;KEGG=Os03t0180300-03
Chr03	irgsp1_rep	five_prime_UTR	4207312	4207829	.	+	.	Parent=Os03t0180300-03
Chr03	irgsp1_rep	CDS	4207830	4208223	.	+	0	Parent=Os03t0180300-03
Chr03	irgsp1_rep	CDS	4208315	4208385	.	+	2	Parent=Os03t0180300-03
Chr03	irgsp1_rep	CDS	4208951	4209069	.	+	0	Parent=Os03t0180300-03
Chr03	irgsp1_rep	CDS	4209730	4210006	.	+	1	Parent=Os03t0180300-03
Chr03	irgsp1_rep	three_prime_UTR	4210007	4210236	.	+	.	Parent=Os03t0180300-03
Chr03	irgsp1_rep	mRNA	4208154	4210048	.	+	.	ID=Os03t0180300-04;Name=Os03t0180300-04;Locus_id=Os03g0180300;Note=Hypothetical conserved gene.;Transcript_evidence=AK061621 (DDBJ%2C Best hit);ORF_evidence=Q10QX0 (UniProt);InterPro=Smr protein/MutS2 C-terminal (IPR002625);NIAS_FLcDNA=001-033-H10;Expression=AK061621;TENOR=Os03t0180300-04;KEGG=Os03t0180300-04
Chr03	irgsp1_rep	CDS	4208154	4208223	.	+	0	Parent=Os03t0180300-04
Chr03	irgsp1_rep	CDS	4208315	4208385	.	+	2	Parent=Os03t0180300-04
Chr03	irgsp1_rep	CDS	4208951	4209069	.	+	0	Parent=Os03t0180300-04
Chr03	irgsp1_rep	CDS	4209730	4210006	.	+	1	Parent=Os03t0180300-04
Chr03	irgsp1_rep	three_prime_UTR	4210007	4210048	.	+	.	Parent=Os03t0180300-04
Chr03	irgsp1_rep	mRNA	4210533	4212985	.	-	.	ID=Os03t0180400-01;Name=Os03t0180400-01;Locus_id=Os03g0180400;Oryzabase Gene Symbol Synonym(s)=OsPAA1%2C PAA1;Oryzabase Gene Name Synonym(s)=20S proteasome alpha1 subunit;Note=Proteasome subunit alpha type 6 (EC 3.4.25.1) (20S proteasome alpha subunit A) (20S proteasome subunit alpha-1).;Transcript_evidence=AK101031 (DDBJ%2C Best hit),AK059929 (DDBJ%2C Best hit),AK060026 (DDBJ%2C Best hit),AK104324 (DDBJ%2C Best hit);ORF_evidence=A2XD75 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603),Cellular Component: proteasome core complex (GO:0005839),Cellular Component: proteasome core complex%2C alpha-subunit complex (GO:0019773),Molecular Function: endopeptidase activity (GO:0004175),Molecular Function: threonine-type endopeptidase activity (GO:0004298);InterPro=Proteasome%2C alpha-subunit%2C conserved site (IPR000426),Proteasome%2C subunit alpha/beta (IPR001353),Proteasome A-type subunit (IPR023332);NIAS_FLcDNA=J023150K05,006-210-A07,006-303-C02,001-027-G09;Oryzabase=14494;TENOR=Os03t0180400-01
Chr03	irgsp1_rep	five_prime_UTR	4212874	4212985	.	-	.	Parent=Os03t0180400-01
Chr03	irgsp1_rep	CDS	4212798	4212873	.	-	0	Parent=Os03t0180400-01
Chr03	irgsp1_rep	CDS	4212566	4212660	.	-	2	Parent=Os03t0180400-01
Chr03	irgsp1_rep	CDS	4212364	4212445	.	-	0	Parent=Os03t0180400-01
Chr03	irgsp1_rep	CDS	4211676	4211772	.	-	2	Parent=Os03t0180400-01
Chr03	irgsp1_rep	CDS	4211502	4211560	.	-	1	Parent=Os03t0180400-01
Chr03	irgsp1_rep	CDS	4211301	4211383	.	-	2	Parent=Os03t0180400-01
Chr03	irgsp1_rep	CDS	4211050	4211145	.	-	0	Parent=Os03t0180400-01
Chr03	irgsp1_rep	CDS	4210907	4210966	.	-	0	Parent=Os03t0180400-01
Chr03	irgsp1_rep	CDS	4210727	4210819	.	-	0	Parent=Os03t0180400-01
Chr03	irgsp1_rep	three_prime_UTR	4210533	4210726	.	-	.	Parent=Os03t0180400-01
Chr03	irgsp1_rep	mRNA	4217189	4219053	.	-	.	ID=Os03t0180500-01;Name=Os03t0180500-01;Locus_id=Os03g0180500;Note=Conserved hypothetical protein.;Transcript_evidence=AK070949 (DDBJ%2C Best hit);ORF_evidence=Q6Z8Y9 (UniProt);NIAS_FLcDNA=J023073N14;TENOR=Os03t0180500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	4218698	4219053	.	-	.	Parent=Os03t0180500-01
Chr03	irgsp1_rep	CDS	4218313	4218697	.	-	0	Parent=Os03t0180500-01
Chr03	irgsp1_rep	CDS	4218199	4218251	.	-	2	Parent=Os03t0180500-01
Chr03	irgsp1_rep	three_prime_UTR	4217911	4218114	.	-	.	Parent=Os03t0180500-01
Chr03	irgsp1_rep	three_prime_UTR	4217189	4217755	.	-	.	Parent=Os03t0180500-01
Chr03	irgsp1_rep	mRNA	4216734	4219023	.	-	.	ID=Os03t0180500-02;Name=Os03t0180500-02;Locus_id=Os03g0180500;Note=Conserved hypothetical protein.;Transcript_evidence=AK069362 (DDBJ%2C Best hit);ORF_evidence=Q6Z8Y9 (UniProt);NIAS_FLcDNA=J023014K23;TENOR=Os03t0180500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	4218698	4219023	.	-	.	Parent=Os03t0180500-02
Chr03	irgsp1_rep	CDS	4218313	4218697	.	-	0	Parent=Os03t0180500-02
Chr03	irgsp1_rep	CDS	4218199	4218239	.	-	2	Parent=Os03t0180500-02
Chr03	irgsp1_rep	three_prime_UTR	4217911	4218066	.	-	.	Parent=Os03t0180500-02
Chr03	irgsp1_rep	three_prime_UTR	4216734	4217755	.	-	.	Parent=Os03t0180500-02
Chr03	irgsp1_rep	mRNA	4222085	4223728	.	+	.	ID=Os03t0180600-01;Name=Os03t0180600-01;Locus_id=Os03g0180600;Note=Conserved hypothetical protein.;Transcript_evidence=AK101997 (DDBJ%2C Best hit);ORF_evidence=Q8GSG6 (UniProt);NIAS_FLcDNA=J033079K20;Expression=AK101997;TENOR=Os03t0180600-01;KEGG=Os03t0180600-01
Chr03	irgsp1_rep	five_prime_UTR	4222085	4222280	.	+	.	Parent=Os03t0180600-01
Chr03	irgsp1_rep	CDS	4222281	4222487	.	+	0	Parent=Os03t0180600-01
Chr03	irgsp1_rep	CDS	4222587	4222656	.	+	0	Parent=Os03t0180600-01
Chr03	irgsp1_rep	CDS	4222752	4223161	.	+	2	Parent=Os03t0180600-01
Chr03	irgsp1_rep	CDS	4223275	4223416	.	+	0	Parent=Os03t0180600-01
Chr03	irgsp1_rep	CDS	4223525	4223550	.	+	2	Parent=Os03t0180600-01
Chr03	irgsp1_rep	three_prime_UTR	4223551	4223728	.	+	.	Parent=Os03t0180600-01
Chr03	irgsp1_rep	mRNA	4223430	4228423	.	-	.	ID=Os03t0180700-01;Name=Os03t0180700-01;Locus_id=Os03g0180700;Note=Glycosyl transferase%2C group 1 domain containing protein.;Transcript_evidence=AK069776 (DDBJ%2C Best hit);ORF_evidence=NP_001149006.1 (RefSeq);GO=Biological Process: biosynthetic process (GO:0009058);InterPro=Glycosyl transferase%2C family 1 (IPR001296);NIAS_FLcDNA=J023029I02;Expression=AK069776;TENOR=Os03t0180700-01;KEGG=Os03t0180700-01 (EC:2.4.1.142)
Chr03	irgsp1_rep	five_prime_UTR	4228290	4228423	.	-	.	Parent=Os03t0180700-01
Chr03	irgsp1_rep	five_prime_UTR	4227733	4227793	.	-	.	Parent=Os03t0180700-01
Chr03	irgsp1_rep	CDS	4227622	4227732	.	-	0	Parent=Os03t0180700-01
Chr03	irgsp1_rep	CDS	4227003	4227036	.	-	0	Parent=Os03t0180700-01
Chr03	irgsp1_rep	CDS	4226788	4226843	.	-	2	Parent=Os03t0180700-01
Chr03	irgsp1_rep	CDS	4226580	4226714	.	-	0	Parent=Os03t0180700-01
Chr03	irgsp1_rep	CDS	4225986	4226134	.	-	0	Parent=Os03t0180700-01
Chr03	irgsp1_rep	CDS	4225811	4225900	.	-	1	Parent=Os03t0180700-01
Chr03	irgsp1_rep	CDS	4225627	4225693	.	-	1	Parent=Os03t0180700-01
Chr03	irgsp1_rep	CDS	4225495	4225558	.	-	0	Parent=Os03t0180700-01
Chr03	irgsp1_rep	CDS	4225302	4225407	.	-	2	Parent=Os03t0180700-01
Chr03	irgsp1_rep	CDS	4225026	4225192	.	-	1	Parent=Os03t0180700-01
Chr03	irgsp1_rep	CDS	4224837	4224947	.	-	2	Parent=Os03t0180700-01
Chr03	irgsp1_rep	CDS	4224707	4224768	.	-	2	Parent=Os03t0180700-01
Chr03	irgsp1_rep	CDS	4224573	4224625	.	-	0	Parent=Os03t0180700-01
Chr03	irgsp1_rep	CDS	4224396	4224471	.	-	1	Parent=Os03t0180700-01
Chr03	irgsp1_rep	CDS	4224152	4224280	.	-	0	Parent=Os03t0180700-01
Chr03	irgsp1_rep	CDS	4223978	4223989	.	-	0	Parent=Os03t0180700-01
Chr03	irgsp1_rep	three_prime_UTR	4223430	4223977	.	-	.	Parent=Os03t0180700-01
Chr03	irgsp1_rep	mRNA	4232004	4233038	.	-	.	ID=Os03t0180800-01;Name=Os03t0180800-01;Locus_id=Os03g0180800;RAP-DB Gene Symbol Synonym(s)=TIFY11A%2C OsJAZ3%2C OsJAZ 9%2C OsJAZ9%2C OsTIFY11a%2C JAZ9;RAP-DB Gene Name Synonym(s)=TIFY GENE 11A%2C Jasmonate ZIM-domain protein 3%2C Jasmonate ZIM-domain protein 9.;CGSNL Gene Symbol=TIFY11A;CGSNL Gene Name=TIFY GENE 11A;Oryzabase Gene Symbol Synonym(s)=OsJAZ3%2C JAZ3%2C OsJAZ 9%2C OsJAZ9%2C Os-JAZ9%2C JAZ9%2C OsTIFY11a%2C OsJAZ6%2C JAZ6;Oryzabase Gene Name Synonym(s)=Jasmonate ZIM-domain protein 3%2C Jasmonate ZIM-domain protein 9;Note=TIFY domain-containing transcriptional regulator%2C Salt and dehydration stress tolerance;Transcript_evidence=AK070649;ORF_evidence=Q8GSI0;InterPro=Tify (IPR010399),CO/COL/TOC1%2C conserved site (IPR018467);NIAS_FLcDNA=J023062P07;Manual Curation=June 11%2C 2015;Literature_PMID=25617318,19618278;Oryzabase=9489;TENOR=Os03t0180800-01
Chr03	irgsp1_rep	five_prime_UTR	4232939	4233038	.	-	.	Parent=Os03t0180800-01
Chr03	irgsp1_rep	CDS	4232399	4232938	.	-	0	Parent=Os03t0180800-01
Chr03	irgsp1_rep	three_prime_UTR	4232004	4232398	.	-	.	Parent=Os03t0180800-01
Chr03	irgsp1_rep	mRNA	4236724	4238058	.	+	.	ID=Os03t0180900-01;Name=Os03t0180900-01;Locus_id=Os03g0180900;CGSNL Gene Symbol=TIFY11C;CGSNL Gene Name=TIFY GENE 11C;Oryzabase Gene Symbol Synonym(s)=OsJAZ2%2C JAZ2%2C OsJAZ 11%2C OsJAZ11%2C Os-JAZ11%2C JAZ11%2C OsTIFY11c. OsJAZ1%2C JAZ1;Oryzabase Gene Name Synonym(s)=Jasmonate ZIM-domain protein 2%2C Jasmonate ZIM-domain protein 11;Note=Tify domain containing protein.;Transcript_evidence=AK073589 (DDBJ%2C Best hit);ORF_evidence=NP_001148303.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Tify (IPR010399),CO/COL/TOC1%2C conserved site (IPR018467);NIAS_FLcDNA=J033051K03;Oryzabase=9488;Expression=AK073589;TENOR=Os03t0180900-01;KEGG=Os03t0180900-01
Chr03	irgsp1_rep	five_prime_UTR	4236724	4236822	.	+	.	Parent=Os03t0180900-01
Chr03	irgsp1_rep	CDS	4236823	4237094	.	+	0	Parent=Os03t0180900-01
Chr03	irgsp1_rep	CDS	4237204	4237382	.	+	1	Parent=Os03t0180900-01
Chr03	irgsp1_rep	CDS	4237499	4237677	.	+	2	Parent=Os03t0180900-01
Chr03	irgsp1_rep	three_prime_UTR	4237678	4238058	.	+	.	Parent=Os03t0180900-01
Chr03	irgsp1_rep	mRNA	4248884	4249820	.	+	.	ID=Os03t0181100-01;Name=Os03t0181100-01;Locus_id=Os03g0181100;CGSNL Gene Symbol=TIFY11B;CGSNL Gene Name=TIFY GENE 11B;Oryzabase Gene Symbol Synonym(s)=OsJAZ4%2C JAZ4%2C OsJAZ 10%2C OsJAZ10%2C JAZ10%2C OsTIFY11b;Oryzabase Gene Name Synonym(s)=Jasmonate ZIM-domain protein 4%2C Jasmonate ZIM-domain protein 10;Note=Tify domain containing protein.;Transcript_evidence=AK120087 (DDBJ%2C Best hit);ORF_evidence=NP_001149525.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Tify (IPR010399),CO/COL/TOC1%2C conserved site (IPR018467);NIAS_FLcDNA=J013020K01;Oryzabase=9490;Expression=AK120087;TENOR=Os03t0181100-01;KEGG=Os03t0181100-01
Chr03	irgsp1_rep	five_prime_UTR	4248884	4249081	.	+	.	Parent=Os03t0181100-01
Chr03	irgsp1_rep	CDS	4249082	4249645	.	+	0	Parent=Os03t0181100-01
Chr03	irgsp1_rep	three_prime_UTR	4249646	4249820	.	+	.	Parent=Os03t0181100-01
Chr03	irgsp1_rep	mRNA	4248976	4249816	.	+	.	ID=Os03t0181100-02;Name=Os03t0181100-02;Locus_id=Os03g0181100;CGSNL Gene Symbol=TIFY11B;CGSNL Gene Name=TIFY GENE 11B;Oryzabase Gene Symbol Synonym(s)=OsJAZ4%2C JAZ4%2C OsJAZ 10%2C OsJAZ10%2C JAZ10%2C OsTIFY11b;Oryzabase Gene Name Synonym(s)=Jasmonate ZIM-domain protein 4%2C Jasmonate ZIM-domain protein 10;Note=Tify domain containing protein.;Transcript_evidence=AK067971 (DDBJ%2C Best hit);ORF_evidence=NP_001149525.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Tify (IPR010399),CO/COL/TOC1%2C conserved site (IPR018467);NIAS_FLcDNA=J013123K19;Oryzabase=9490;Expression=AK067971;TENOR=Os03t0181100-02;KEGG=Os03t0181100-02
Chr03	irgsp1_rep	five_prime_UTR	4248976	4249081	.	+	.	Parent=Os03t0181100-02
Chr03	irgsp1_rep	CDS	4249082	4249645	.	+	0	Parent=Os03t0181100-02
Chr03	irgsp1_rep	three_prime_UTR	4249646	4249816	.	+	.	Parent=Os03t0181100-02
Chr03	irgsp1_rep	mRNA	4260935	4262845	.	+	.	ID=Os03t0181400-01;Name=Os03t0181400-01;Locus_id=Os03g0181400;Note=Similar to ubiquitin thiolesterase.;Transcript_evidence=AK064006 (DDBJ%2C Best hit);ORF_evidence=NP_680185.1 (RefSeq);InterPro=Plant organelle RNA recognition domain (IPR021099);NIAS_FLcDNA=001-124-G07;TENOR=Os03t0181400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	4260935	4261195	.	+	.	Parent=Os03t0181400-01
Chr03	irgsp1_rep	CDS	4261196	4262497	.	+	0	Parent=Os03t0181400-01
Chr03	irgsp1_rep	three_prime_UTR	4262498	4262845	.	+	.	Parent=Os03t0181400-01
Chr03	irgsp1_rep	mRNA	4266978	4271778	.	+	.	ID=Os03t0181500-01;Name=Os03t0181500-01;Locus_id=Os03g0181500;RAP-DB Gene Symbol Synonym(s)=ONI1;RAP-DB Gene Name Synonym(s)=ONION1;CGSNL Gene Symbol=ONI1;CGSNL Gene Name=ONION 1;Oryzabase Gene Symbol Synonym(s)=OsONI1;Oryzabase Gene Name Synonym(s)=ONION1;Note=Fatty acid elongase (beta-ketoacyl-CoA synthase)%2C Shoot development;Transcript_evidence=AK099232,AK060840,AK061335,AK119228;ORF_evidence=Q10QW1;GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: metabolic process (GO:0008152),Biological Process: lipid biosynthetic process (GO:0008610),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747),Cellular Component: membrane (GO:0016020);InterPro=Very-long-chain 3-ketoacyl-CoA synthase (IPR012392),Thiolase-like (IPR016039),Thiolase-like%2C subgroup (IPR016038),FAE1/Type III polyketide synthase-like protein (IPR013601),3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (IPR013747);NIAS_FLcDNA=006-303-B10,001-034-D04,J013094M20,001-101-A08;Manual Curation=December 5%2C 2014;Literature_PMID=21309865;Oryzabase=12365;TENOR=Os03t0181500-01;KEGG=Os03t0181500-01
Chr03	irgsp1_rep	five_prime_UTR	4266978	4267031	.	+	.	Parent=Os03t0181500-01
Chr03	irgsp1_rep	CDS	4267032	4267442	.	+	0	Parent=Os03t0181500-01
Chr03	irgsp1_rep	CDS	4270335	4271552	.	+	0	Parent=Os03t0181500-01
Chr03	irgsp1_rep	three_prime_UTR	4271553	4271778	.	+	.	Parent=Os03t0181500-01
Chr03	irgsp1_rep	mRNA	4271120	4271781	.	+	.	ID=Os03t0181500-02;Name=Os03t0181500-02;Locus_id=Os03g0181500;CGSNL Gene Symbol=ONI1;CGSNL Gene Name=ONION 1;Oryzabase Gene Symbol Synonym(s)=OsONI1;Oryzabase Gene Name Synonym(s)=ONION1;Note=Similar to (Rice Genome Annotation Project) fiddlehead-like protein.;Transcript_evidence=AK100798 (DDBJ%2C Best hit);ORF_evidence=Q10QW0 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: lipid biosynthetic process (GO:0008610),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (IPR013747),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);NIAS_FLcDNA=J023121F20;Oryzabase=12365;TENOR=Os03t0181500-02;KEGG=Os03t0181500-02
Chr03	irgsp1_rep	five_prime_UTR	4271120	4271120	.	+	.	Parent=Os03t0181500-02
Chr03	irgsp1_rep	CDS	4271121	4271552	.	+	0	Parent=Os03t0181500-02
Chr03	irgsp1_rep	three_prime_UTR	4271553	4271781	.	+	.	Parent=Os03t0181500-02
Chr03	irgsp1_rep	mRNA	4267130	4271539	.	-	.	ID=Os03t0181550-00;Name=Os03t0181550-00;Locus_id=Os03g0181550;Note=Hypothetical protein.;Transcript_evidence=tplb0055l20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0181550-00
Chr03	irgsp1_rep	five_prime_UTR	4271538	4271539	.	-	.	Parent=Os03t0181550-00
Chr03	irgsp1_rep	CDS	4271184	4271537	.	-	0	Parent=Os03t0181550-00
Chr03	irgsp1_rep	CDS	4270323	4271132	.	-	0	Parent=Os03t0181550-00
Chr03	irgsp1_rep	CDS	4267130	4267436	.	-	0	Parent=Os03t0181550-00
Chr03	irgsp1_rep	mRNA	4272872	4275642	.	+	.	ID=Os03t0181600-01;Name=Os03t0181600-01;Locus_id=Os03g0181600;CGSNL Gene Symbol=GATA22;CGSNL Gene Name=GATA TRANSCRIPTION FACTOR 22;Oryzabase Gene Symbol Synonym(s)=OsGATA22;Oryzabase Gene Name Synonym(s)=GATA transcription factor 22%2C GATA factor 22;Note=Similar to cDNA clone:J033068D01%2C full insert sequence.;Transcript_evidence=AK101197 (DDBJ%2C Best hit);ORF_evidence=B8A2M6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Zinc finger%2C GATA-type (IPR000679),FAR1 DNA binding domain (IPR004330),Zinc finger%2C NHR/GATA-type (IPR013088),MULE transposase domain (IPR018289);NIAS_FLcDNA=J033030K10;Oryzabase=20501;TENOR=Os03t0181600-01
Chr03	irgsp1_rep	five_prime_UTR	4272872	4273365	.	+	.	Parent=Os03t0181600-01
Chr03	irgsp1_rep	CDS	4273366	4273451	.	+	0	Parent=Os03t0181600-01
Chr03	irgsp1_rep	CDS	4274264	4274366	.	+	1	Parent=Os03t0181600-01
Chr03	irgsp1_rep	CDS	4274448	4275642	.	+	0	Parent=Os03t0181600-01
Chr03	irgsp1_rep	mRNA	4272873	4277466	.	+	.	ID=Os03t0181600-02;Name=Os03t0181600-02;Locus_id=Os03g0181600;CGSNL Gene Symbol=GATA22;CGSNL Gene Name=GATA TRANSCRIPTION FACTOR 22;Oryzabase Gene Symbol Synonym(s)=OsGATA22;Oryzabase Gene Name Synonym(s)=GATA transcription factor 22%2C GATA factor 22;Note=Similar to GATA transcription factor 25 (ZIM-like 2 protein).;Transcript_evidence=AK067807 (DDBJ%2C Best hit);ORF_evidence=B8A2M6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Zinc finger%2C GATA-type (IPR000679),FAR1 DNA binding domain (IPR004330),Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527),Zinc finger%2C NHR/GATA-type (IPR013088),MULE transposase domain (IPR018289);NIAS_FLcDNA=J013120L22;Oryzabase=20501;Expression=AK067807;TENOR=Os03t0181600-02;KEGG=Os03t0181600-02
Chr03	irgsp1_rep	five_prime_UTR	4272873	4273365	.	+	.	Parent=Os03t0181600-02
Chr03	irgsp1_rep	CDS	4273366	4273451	.	+	0	Parent=Os03t0181600-02
Chr03	irgsp1_rep	CDS	4274264	4274366	.	+	1	Parent=Os03t0181600-02
Chr03	irgsp1_rep	CDS	4274448	4276316	.	+	0	Parent=Os03t0181600-02
Chr03	irgsp1_rep	CDS	4276402	4276461	.	+	0	Parent=Os03t0181600-02
Chr03	irgsp1_rep	CDS	4276980	4277060	.	+	0	Parent=Os03t0181600-02
Chr03	irgsp1_rep	three_prime_UTR	4277061	4277466	.	+	.	Parent=Os03t0181600-02
Chr03	irgsp1_rep	mRNA	4279300	4281410	.	+	.	ID=Os03t0181675-00;Name=Os03t0181675-00;Locus_id=Os03g0181675;CGSNL Gene Symbol=ABCB12;CGSNL Gene Name=ABC TRANSPORTER B FAMILY MEMBER 12;Oryzabase Gene Symbol Synonym(s)=OsABCB12%2C OsPGP12%2C PGP12;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCB subgroup member 12%2C P-Glycoprotein 12;Note=ABC transporter%2C transmembrane domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8APN9 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C integral membrane type 1 (IPR017940);Oryzabase=11931;TENOR=Os03t0181675-00
Chr03	irgsp1_rep	CDS	4279300	4280268	.	+	0	Parent=Os03t0181675-00
Chr03	irgsp1_rep	CDS	4280362	4280416	.	+	0	Parent=Os03t0181675-00
Chr03	irgsp1_rep	CDS	4280506	4280681	.	+	2	Parent=Os03t0181675-00
Chr03	irgsp1_rep	CDS	4280767	4280931	.	+	0	Parent=Os03t0181675-00
Chr03	irgsp1_rep	CDS	4281024	4281410	.	+	0	Parent=Os03t0181675-00
Chr03	irgsp1_rep	mRNA	4281418	4284885	.	+	.	ID=Os03t0181750-00;Name=Os03t0181750-00;Locus_id=Os03g0181750;CGSNL Gene Symbol=ABCB12;CGSNL Gene Name=ABC TRANSPORTER B FAMILY MEMBER 12;Oryzabase Gene Symbol Synonym(s)=OsABCB12%2C OsPGP12%2C PGP12;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCB subgroup member 12%2C P-Glycoprotein 12;Note=ABC transporter%2C transmembrane domain domain containing protein.;Transcript_evidence=BT066367 (DDBJ);ORF_evidence=Q8H7L0 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);Oryzabase=11931;TENOR=Os03t0181750-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	4281418	4282074	.	+	0	Parent=Os03t0181750-00
Chr03	irgsp1_rep	CDS	4282165	4284057	.	+	0	Parent=Os03t0181750-00
Chr03	irgsp1_rep	CDS	4284538	4284885	.	+	0	Parent=Os03t0181750-00
Chr03	irgsp1_rep	mRNA	4287354	4291792	.	+	.	ID=Os03t0181800-01;Name=Os03t0181800-01;Locus_id=Os03g0181800;Note=Protein of unknown function DUF936%2C plant family protein.;Transcript_evidence=AK070399 (DDBJ%2C Best hit);ORF_evidence=A2XD85 (UniProt);InterPro=Protein of unknown function DUF936%2C plant (IPR010341);NIAS_FLcDNA=J023049M11;Expression=AK070399;TENOR=Os03t0181800-01;KEGG=Os03t0181800-01
Chr03	irgsp1_rep	five_prime_UTR	4287354	4287431	.	+	.	Parent=Os03t0181800-01
Chr03	irgsp1_rep	five_prime_UTR	4289016	4289047	.	+	.	Parent=Os03t0181800-01
Chr03	irgsp1_rep	CDS	4289048	4289695	.	+	0	Parent=Os03t0181800-01
Chr03	irgsp1_rep	CDS	4289976	4290353	.	+	0	Parent=Os03t0181800-01
Chr03	irgsp1_rep	CDS	4290566	4290657	.	+	0	Parent=Os03t0181800-01
Chr03	irgsp1_rep	CDS	4290850	4291453	.	+	1	Parent=Os03t0181800-01
Chr03	irgsp1_rep	three_prime_UTR	4291454	4291792	.	+	.	Parent=Os03t0181800-01
Chr03	irgsp1_rep	mRNA	4289543	4291799	.	+	.	ID=Os03t0181800-02;Name=Os03t0181800-02;Locus_id=Os03g0181800;Note=Hypothetical conserved gene.;Transcript_evidence=AK058391 (DDBJ%2C Best hit);ORF_evidence=A2XD85 (UniProt);InterPro=Protein of unknown function DUF936%2C plant (IPR010341);NIAS_FLcDNA=001-015-A07;Expression=AK058391;TENOR=Os03t0181800-02;KEGG=Os03t0181800-02
Chr03	irgsp1_rep	CDS	4289543	4289695	.	+	0	Parent=Os03t0181800-02
Chr03	irgsp1_rep	CDS	4289976	4290353	.	+	0	Parent=Os03t0181800-02
Chr03	irgsp1_rep	CDS	4290566	4290657	.	+	0	Parent=Os03t0181800-02
Chr03	irgsp1_rep	CDS	4290850	4291453	.	+	1	Parent=Os03t0181800-02
Chr03	irgsp1_rep	three_prime_UTR	4291454	4291799	.	+	.	Parent=Os03t0181800-02
Chr03	irgsp1_rep	mRNA	4311292	4314363	.	+	.	ID=Os03t0182000-00;Name=Os03t0182000-00;Locus_id=Os03g0182000;Note=Similar to flavin-dependent monooxygenase 1.;Transcript_evidence=BT040713 (DDBJ);ORF_evidence=XP_002893036.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: flavin-containing monooxygenase activity (GO:0004499),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=Flavin monooxygenase-like (IPR020946);TENOR=Os03t0182000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	4311292	4311795	.	+	0	Parent=Os03t0182000-00
Chr03	irgsp1_rep	CDS	4312010	4312250	.	+	0	Parent=Os03t0182000-00
Chr03	irgsp1_rep	CDS	4313200	4313373	.	+	2	Parent=Os03t0182000-00
Chr03	irgsp1_rep	CDS	4313532	4313887	.	+	2	Parent=Os03t0182000-00
Chr03	irgsp1_rep	CDS	4313974	4314363	.	+	0	Parent=Os03t0182000-00
Chr03	irgsp1_rep	mRNA	4327386	4328205	.	-	.	ID=Os03t0182350-01;Name=Os03t0182350-01;Locus_id=Os03g0182350;Note=Non-protein coding transcript.;Transcript_evidence=AK241509 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065168G18;TENOR=Os03t0182350-01
Chr03	irgsp1_rep	exon	4327386	4328205	.	-	.	Parent=Os03t0182350-01
Chr03	irgsp1_rep	mRNA	4327773	4336225	.	+	.	ID=Os03t0182400-01;Name=Os03t0182400-01;Locus_id=Os03g0182400;Note=Similar to SAC domain protein 1 (FIG4-like protein AtFIG4).;Transcript_evidence=AK100037 (DDBJ%2C Best hit);ORF_evidence=Q10QV0 (UniProt);GO=Molecular Function: phosphoric ester hydrolase activity (GO:0042578);InterPro=Synaptojanin%2C N-terminal (IPR002013);NIAS_FLcDNA=J013151A15;Expression=AK100037;TENOR=Os03t0182400-01;KEGG=Os03t0182400-01
Chr03	irgsp1_rep	five_prime_UTR	4327773	4328339	.	+	.	Parent=Os03t0182400-01
Chr03	irgsp1_rep	CDS	4328340	4328399	.	+	0	Parent=Os03t0182400-01
Chr03	irgsp1_rep	CDS	4329153	4329357	.	+	0	Parent=Os03t0182400-01
Chr03	irgsp1_rep	CDS	4329458	4329623	.	+	2	Parent=Os03t0182400-01
Chr03	irgsp1_rep	CDS	4330248	4330470	.	+	1	Parent=Os03t0182400-01
Chr03	irgsp1_rep	CDS	4331104	4331180	.	+	0	Parent=Os03t0182400-01
Chr03	irgsp1_rep	CDS	4331304	4331491	.	+	1	Parent=Os03t0182400-01
Chr03	irgsp1_rep	CDS	4331576	4331670	.	+	2	Parent=Os03t0182400-01
Chr03	irgsp1_rep	CDS	4331887	4332020	.	+	0	Parent=Os03t0182400-01
Chr03	irgsp1_rep	CDS	4332127	4332237	.	+	1	Parent=Os03t0182400-01
Chr03	irgsp1_rep	CDS	4332517	4332832	.	+	1	Parent=Os03t0182400-01
Chr03	irgsp1_rep	CDS	4333132	4333253	.	+	0	Parent=Os03t0182400-01
Chr03	irgsp1_rep	CDS	4333396	4333506	.	+	1	Parent=Os03t0182400-01
Chr03	irgsp1_rep	CDS	4334037	4334225	.	+	1	Parent=Os03t0182400-01
Chr03	irgsp1_rep	CDS	4334318	4334476	.	+	1	Parent=Os03t0182400-01
Chr03	irgsp1_rep	CDS	4334662	4334743	.	+	1	Parent=Os03t0182400-01
Chr03	irgsp1_rep	CDS	4335290	4335403	.	+	0	Parent=Os03t0182400-01
Chr03	irgsp1_rep	three_prime_UTR	4335404	4336225	.	+	.	Parent=Os03t0182400-01
Chr03	irgsp1_rep	mRNA	4336829	4338901	.	-	.	ID=Os03t0182600-01;Name=Os03t0182600-01;Locus_id=Os03g0182600;Oryzabase Gene Name Synonym(s)=Laminin receptor;Note=Ribosomal protein S2 family protein.;Transcript_evidence=AK061289 (DDBJ%2C Best hit);ORF_evidence=Q10QU9 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: small ribosomal subunit (GO:0015935),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S2 (IPR001865),Ribosomal protein S2%2C eukaryotic/archaeal (IPR005707),Ribosomal protein S2%2C flavodoxin-like domain (IPR023591);NIAS_FLcDNA=006-301-A03;Oryzabase=17639;Expression=AK061289;TENOR=Os03t0182600-01;KEGG=Os03t0182600-01
Chr03	irgsp1_rep	five_prime_UTR	4338811	4338901	.	-	.	Parent=Os03t0182600-01
Chr03	irgsp1_rep	CDS	4338736	4338810	.	-	0	Parent=Os03t0182600-01
Chr03	irgsp1_rep	CDS	4338666	4338690	.	-	0	Parent=Os03t0182600-01
Chr03	irgsp1_rep	CDS	4338120	4338266	.	-	2	Parent=Os03t0182600-01
Chr03	irgsp1_rep	CDS	4338023	4338078	.	-	2	Parent=Os03t0182600-01
Chr03	irgsp1_rep	three_prime_UTR	4338004	4338022	.	-	.	Parent=Os03t0182600-01
Chr03	irgsp1_rep	three_prime_UTR	4337717	4337914	.	-	.	Parent=Os03t0182600-01
Chr03	irgsp1_rep	three_prime_UTR	4337432	4337612	.	-	.	Parent=Os03t0182600-01
Chr03	irgsp1_rep	three_prime_UTR	4336829	4337180	.	-	.	Parent=Os03t0182600-01
Chr03	irgsp1_rep	mRNA	4336742	4338899	.	-	.	ID=Os03t0182600-02;Name=Os03t0182600-02;Locus_id=Os03g0182600;Oryzabase Gene Name Synonym(s)=Laminin receptor;Note=Similar to 40S ribosomal protein SA.;Transcript_evidence=AK070905 (DDBJ%2C Best hit),AK104286 (DDBJ%2C Best hit),AK104620 (DDBJ%2C Best hit),AK104842 (DDBJ%2C Best hit);ORF_evidence=NP_001149295.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: small ribosomal subunit (GO:0015935),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S2 (IPR001865),Ribosomal protein S2%2C eukaryotic/archaeal (IPR005707),Ribosomal protein S2%2C conserved site (IPR018130),Ribosomal protein S2%2C flavodoxin-like domain (IPR023591);NIAS_FLcDNA=J023065M10,001-007-D06,006-309-F12,001-042-F12;Oryzabase=17639;TENOR=Os03t0182600-02
Chr03	irgsp1_rep	five_prime_UTR	4338811	4338899	.	-	.	Parent=Os03t0182600-02
Chr03	irgsp1_rep	CDS	4338666	4338810	.	-	0	Parent=Os03t0182600-02
Chr03	irgsp1_rep	CDS	4338004	4338266	.	-	2	Parent=Os03t0182600-02
Chr03	irgsp1_rep	CDS	4337717	4337914	.	-	0	Parent=Os03t0182600-02
Chr03	irgsp1_rep	CDS	4337432	4337612	.	-	0	Parent=Os03t0182600-02
Chr03	irgsp1_rep	CDS	4337050	4337180	.	-	2	Parent=Os03t0182600-02
Chr03	irgsp1_rep	three_prime_UTR	4336742	4337049	.	-	.	Parent=Os03t0182600-02
Chr03	irgsp1_rep	mRNA	4336818	4338894	.	-	.	ID=Os03t0182600-03;Name=Os03t0182600-03;Locus_id=Os03g0182600;Oryzabase Gene Name Synonym(s)=Laminin receptor;Note=Similar to 40S ribosomal protein SA.;Transcript_evidence=AK066899 (DDBJ%2C Best hit);ORF_evidence=Q10QU9 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: small ribosomal subunit (GO:0015935),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S2 (IPR001865),Ribosomal protein S2%2C eukaryotic/archaeal (IPR005707),Ribosomal protein S2%2C flavodoxin-like domain (IPR023591);NIAS_FLcDNA=J013091K05;Oryzabase=17639;Expression=AK066899;TENOR=Os03t0182600-03;KEGG=Os03t0182600-03
Chr03	irgsp1_rep	five_prime_UTR	4338811	4338894	.	-	.	Parent=Os03t0182600-03
Chr03	irgsp1_rep	CDS	4338666	4338810	.	-	0	Parent=Os03t0182600-03
Chr03	irgsp1_rep	CDS	4338159	4338266	.	-	2	Parent=Os03t0182600-03
Chr03	irgsp1_rep	CDS	4338023	4338105	.	-	2	Parent=Os03t0182600-03
Chr03	irgsp1_rep	three_prime_UTR	4338004	4338022	.	-	.	Parent=Os03t0182600-03
Chr03	irgsp1_rep	three_prime_UTR	4337717	4337914	.	-	.	Parent=Os03t0182600-03
Chr03	irgsp1_rep	three_prime_UTR	4337432	4337612	.	-	.	Parent=Os03t0182600-03
Chr03	irgsp1_rep	three_prime_UTR	4336818	4337180	.	-	.	Parent=Os03t0182600-03
Chr03	irgsp1_rep	mRNA	4339485	4342714	.	-	.	ID=Os03t0182700-02;Name=Os03t0182700-02;Locus_id=Os03g0182700;CGSNL Gene Symbol=EIF3K;CGSNL Gene Name=EUKARYOTIC INITIATION FACTOR 3K;Oryzabase Gene Symbol Synonym(s)=eIF-3k%2C OseIF3k;Oryzabase Gene Name Synonym(s)="eukaryotic translation initiation factor 3%2C subunit k"%2C Eukaryotic translation initiation factor 3 subunit k;Note=Eukaryotic translation initiation factor 3 subunit 12 (eIF-3 p25) (eIF3k).;Transcript_evidence=AK073293 (DDBJ%2C Best hit),AK120235 (DDBJ%2C Best hit);ORF_evidence=Q94HF1 (UniProt);NIAS_FLcDNA=J033024B21,J013043M05;Oryzabase=21029;Expression=AK073293;TENOR=Os03t0182700-02;KEGG=Os03t0182700-02
Chr03	irgsp1_rep	five_prime_UTR	4342582	4342714	.	-	.	Parent=Os03t0182700-02
Chr03	irgsp1_rep	CDS	4342474	4342581	.	-	0	Parent=Os03t0182700-02
Chr03	irgsp1_rep	CDS	4341713	4341769	.	-	0	Parent=Os03t0182700-02
Chr03	irgsp1_rep	CDS	4341576	4341626	.	-	0	Parent=Os03t0182700-02
Chr03	irgsp1_rep	CDS	4341416	4341478	.	-	0	Parent=Os03t0182700-02
Chr03	irgsp1_rep	CDS	4340943	4340993	.	-	0	Parent=Os03t0182700-02
Chr03	irgsp1_rep	CDS	4340794	4340860	.	-	0	Parent=Os03t0182700-02
Chr03	irgsp1_rep	CDS	4340173	4340255	.	-	2	Parent=Os03t0182700-02
Chr03	irgsp1_rep	CDS	4339715	4339915	.	-	0	Parent=Os03t0182700-02
Chr03	irgsp1_rep	three_prime_UTR	4339485	4339714	.	-	.	Parent=Os03t0182700-02
Chr03	irgsp1_rep	mRNA	4343807	4345689	.	-	.	ID=Os03t0182800-01;Name=Os03t0182800-01;Locus_id=Os03g0182800;RAP-DB Gene Symbol Synonym(s)=OsEBP89;RAP-DB Gene Name Synonym(s)=Ethylene-responsive element binding protein%2C clone 89;CGSNL Gene Symbol=EBP-89;CGSNL Gene Name=EREBP TRANSCRIPTION FACTOR;Oryzabase Gene Symbol Synonym(s)=OsEBP-89%2C ebp-89%2C OsERF#060%2C OsERF060%2C OsERF60%2C ERF60%2C AP2/EREBP#027%2C AP2/EREBP27%2C OsEBP89%2C DLN76%2C OsDLN76;Oryzabase Gene Name Synonym(s)=EREBP transcription factor%2C ethylene response factor 60%2C APETALA2/ethylene-responsive element binding protein 27%2C DLN repressor 76%2C DLN motif protein 76;Note=APETALA2/ethylene responsive factor%2C ERF transcription factor%2C Tolerance to drought and submergence stress;Transcript_evidence=AK073133;ORF_evidence=Q7XBH8;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-binding transcription factor activity (GO:0003700);InterPro=DNA-binding domain superfamily (IPR016177),AP2/ERF domain superfamily (IPR036955),AP2/ERF domain (IPR001471);NIAS_FLcDNA=J033023E13;Manual Curation=May 1%2C 2020;Literature_PMID=32350607;Oryzabase=6124;Expression=AK073133;TENOR=Os03t0182800-01;KEGG=Os03t0182800-01;Subcellular location=nucleus (GO:0005634)
Chr03	irgsp1_rep	five_prime_UTR	4345663	4345689	.	-	.	Parent=Os03t0182800-01
Chr03	irgsp1_rep	CDS	4345389	4345662	.	-	0	Parent=Os03t0182800-01
Chr03	irgsp1_rep	CDS	4344851	4345273	.	-	2	Parent=Os03t0182800-01
Chr03	irgsp1_rep	CDS	4344120	4344403	.	-	2	Parent=Os03t0182800-01
Chr03	irgsp1_rep	three_prime_UTR	4343807	4344119	.	-	.	Parent=Os03t0182800-01
Chr03	irgsp1_rep	mRNA	4347084	4348127	.	+	.	ID=Os03t0182900-01;Name=Os03t0182900-01;Locus_id=Os03g0182900;Note=Non-protein coding transcript.;Transcript_evidence=AK103663 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J033135I20;TENOR=Os03t0182900-01
Chr03	irgsp1_rep	exon	4347084	4347327	.	+	.	Parent=Os03t0182900-01
Chr03	irgsp1_rep	exon	4347472	4348127	.	+	.	Parent=Os03t0182900-01
Chr03	irgsp1_rep	mRNA	4349174	4350531	.	-	.	ID=Os03t0183000-01;Name=Os03t0183000-01;Locus_id=Os03g0183000;RAP-DB Gene Symbol Synonym(s)=OsLG3%2C OsAP2-125%2C OsLG3/OsAP2-125;RAP-DB Gene Name Synonym(s)=APETALA2/ethylene-responsive element binding protein 125;CGSNL Gene Symbol=ERF62;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 62;Oryzabase Gene Symbol Synonym(s)=OsERF#062%2C OsERF062%2C OsERF62%2C AP2/EREBP#125%2C AP2/EREBP125%2C AP2-125%2C OsLG3%2C LG3%2C OsLG3/OsAP2-125%2C OsAP2-125%2C WAP1%2C OsWAP1;Oryzabase Gene Name Synonym(s)=ethylene response factor 62%2C APETALA2/ethylene-responsive element binding protein 125%2C Wall-Associated regulator WAP1;Note=APETALA2/ethylene-responsive element binding protein 125%2C Transcription regulator%2C Positive regulator of grain length;Transcript_evidence=AK060527;ORF_evidence=Q10QU5;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700);InterPro=AP2/ERF domain superfamily (IPR036955),DNA-binding domain superfamily (IPR016177),AP2/ERF domain (IPR001471);NIAS_FLcDNA=001-020-F02;Manual Curation=January 9%2C 2018;Literature_PMID=28385155;Oryzabase=10576;Expression=AK060527;TENOR=Os03t0183000-01;KEGG=Os03t0183000-01;Subcellular location=nucleus (GO:0005634)
Chr03	irgsp1_rep	five_prime_UTR	4350438	4350531	.	-	.	Parent=Os03t0183000-01
Chr03	irgsp1_rep	CDS	4350173	4350437	.	-	0	Parent=Os03t0183000-01
Chr03	irgsp1_rep	CDS	4349324	4350063	.	-	2	Parent=Os03t0183000-01
Chr03	irgsp1_rep	three_prime_UTR	4349174	4349323	.	-	.	Parent=Os03t0183000-01
Chr03	irgsp1_rep	mRNA	4348736	4350529	.	-	.	ID=Os03t0183000-02;Name=Os03t0183000-02;Locus_id=Os03g0183000;CGSNL Gene Symbol=ERF62;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 62;Oryzabase Gene Symbol Synonym(s)=OsERF#062%2C OsERF062%2C OsERF62%2C AP2/EREBP#125%2C AP2/EREBP125%2C AP2-125%2C OsLG3%2C LG3%2C OsLG3/OsAP2-125%2C OsAP2-125%2C WAP1%2C OsWAP1;Oryzabase Gene Name Synonym(s)=ethylene response factor 62%2C APETALA2/ethylene-responsive element binding protein 125%2C Wall-Associated regulator WAP1;Note=Similar to AP2 domain containing protein RAP2.6 (Fragment).;Transcript_evidence=AK101949 (DDBJ%2C Best hit);ORF_evidence=Q94HF3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J033075D23;Oryzabase=10576;Expression=AK101949;TENOR=Os03t0183000-02;KEGG=Os03t0183000-02
Chr03	irgsp1_rep	five_prime_UTR	4350438	4350529	.	-	.	Parent=Os03t0183000-02
Chr03	irgsp1_rep	CDS	4350173	4350437	.	-	0	Parent=Os03t0183000-02
Chr03	irgsp1_rep	CDS	4349324	4350063	.	-	2	Parent=Os03t0183000-02
Chr03	irgsp1_rep	three_prime_UTR	4349288	4349323	.	-	.	Parent=Os03t0183000-02
Chr03	irgsp1_rep	three_prime_UTR	4348736	4349176	.	-	.	Parent=Os03t0183000-02
Chr03	irgsp1_rep	mRNA	4348742	4350503	.	-	.	ID=Os03t0183000-03;Name=Os03t0183000-03;Locus_id=Os03g0183000;CGSNL Gene Symbol=ERF62;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 62;Oryzabase Gene Symbol Synonym(s)=OsERF#062%2C OsERF062%2C OsERF62%2C AP2/EREBP#125%2C AP2/EREBP125%2C AP2-125%2C OsLG3%2C LG3%2C OsLG3/OsAP2-125%2C OsAP2-125%2C WAP1%2C OsWAP1;Oryzabase Gene Name Synonym(s)=ethylene response factor 62%2C APETALA2/ethylene-responsive element binding protein 125%2C Wall-Associated regulator WAP1;Note=Similar to Root abundant factor.;Transcript_evidence=AK060929 (DDBJ%2C Best hit);ORF_evidence=Q4F8A4 (UniProt);NIAS_FLcDNA=006-201-A09;Oryzabase=10576;TENOR=Os03t0183000-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	4350242	4350503	.	-	.	Parent=Os03t0183000-03
Chr03	irgsp1_rep	CDS	4350172	4350241	.	-	0	Parent=Os03t0183000-03
Chr03	irgsp1_rep	CDS	4349747	4349819	.	-	2	Parent=Os03t0183000-03
Chr03	irgsp1_rep	CDS	4349324	4349642	.	-	1	Parent=Os03t0183000-03
Chr03	irgsp1_rep	three_prime_UTR	4349288	4349323	.	-	.	Parent=Os03t0183000-03
Chr03	irgsp1_rep	three_prime_UTR	4348742	4349176	.	-	.	Parent=Os03t0183000-03
Chr03	irgsp1_rep	mRNA	4349764	4350447	.	+	.	ID=Os03t0183050-00;Name=Os03t0183050-00;Locus_id=Os03g0183050;Note=Hypothetical gene.;Transcript_evidence=EU941438 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0183050-00;KEGG=Os03t0183050-00
Chr03	irgsp1_rep	five_prime_UTR	4349764	4349764	.	+	.	Parent=Os03t0183050-00
Chr03	irgsp1_rep	CDS	4349765	4350409	.	+	0	Parent=Os03t0183050-00
Chr03	irgsp1_rep	three_prime_UTR	4350410	4350447	.	+	.	Parent=Os03t0183050-00
Chr03	irgsp1_rep	mRNA	4359085	4363219	.	-	.	ID=Os03t0183100-01;Name=Os03t0183100-01;Locus_id=Os03g0183100;CGSNL Gene Symbol=BP73;CGSNL Gene Name=BINDING PROTEIN 73;Oryzabase Gene Symbol Synonym(s)=BP-73%2C OsBP-73%2C Riaa1%2C Os-BP-73;Oryzabase Gene Name Synonym(s)=binding protein-73%2C SAP-like protein BP-73;Note=SAP-like protein BP-73 (OsBP-73) (Riaa1).;Transcript_evidence=AK065516 (DDBJ%2C Best hit);ORF_evidence=Q8L4E7 (UniProt);GO=Biological Process: transcription termination%2C DNA-dependent (GO:0006353);InterPro=Rho termination factor%2C N-terminal (IPR011112);NIAS_FLcDNA=J013026O15;Oryzabase=6092;Expression=AK065516;TENOR=Os03t0183100-01;KEGG=Os03t0183100-01
Chr03	irgsp1_rep	five_prime_UTR	4363124	4363219	.	-	.	Parent=Os03t0183100-01
Chr03	irgsp1_rep	CDS	4363102	4363123	.	-	0	Parent=Os03t0183100-01
Chr03	irgsp1_rep	CDS	4359528	4360633	.	-	2	Parent=Os03t0183100-01
Chr03	irgsp1_rep	three_prime_UTR	4359085	4359527	.	-	.	Parent=Os03t0183100-01
Chr03	irgsp1_rep	mRNA	4356629	4363207	.	-	.	ID=Os03t0183100-02;Name=Os03t0183100-02;Locus_id=Os03g0183100;CGSNL Gene Symbol=BP73;CGSNL Gene Name=BINDING PROTEIN 73;Oryzabase Gene Symbol Synonym(s)=BP-73%2C OsBP-73%2C Riaa1%2C Os-BP-73;Oryzabase Gene Name Synonym(s)=binding protein-73%2C SAP-like protein BP-73;Note=SAP-like protein BP-73 (OsBP-73) (Riaa1).;Transcript_evidence=AK067631 (DDBJ%2C Best hit);ORF_evidence=Q8L4E7 (UniProt);GO=Biological Process: transcription termination%2C DNA-dependent (GO:0006353);InterPro=Rho termination factor%2C N-terminal (IPR011112);NIAS_FLcDNA=J013112F11;Oryzabase=6092;Expression=AK067631;TENOR=Os03t0183100-02;KEGG=Os03t0183100-02
Chr03	irgsp1_rep	five_prime_UTR	4363124	4363207	.	-	.	Parent=Os03t0183100-02
Chr03	irgsp1_rep	CDS	4363102	4363123	.	-	0	Parent=Os03t0183100-02
Chr03	irgsp1_rep	CDS	4359528	4360633	.	-	2	Parent=Os03t0183100-02
Chr03	irgsp1_rep	three_prime_UTR	4358902	4359527	.	-	.	Parent=Os03t0183100-02
Chr03	irgsp1_rep	three_prime_UTR	4358399	4358814	.	-	.	Parent=Os03t0183100-02
Chr03	irgsp1_rep	three_prime_UTR	4357857	4358293	.	-	.	Parent=Os03t0183100-02
Chr03	irgsp1_rep	three_prime_UTR	4357606	4357780	.	-	.	Parent=Os03t0183100-02
Chr03	irgsp1_rep	three_prime_UTR	4356629	4357059	.	-	.	Parent=Os03t0183100-02
Chr03	irgsp1_rep	mRNA	4367273	4368453	.	-	.	ID=Os03t0183200-01;Name=Os03t0183200-01;Locus_id=Os03g0183200;CGSNL Gene Symbol=ERF69;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 69;Oryzabase Gene Symbol Synonym(s)=OsERF#069%2C OsERF069%2C OsERF69%2C AP2/EREBP#028%2C AP2/EREBP28%2C DLN77%2C OsDLN77;Oryzabase Gene Name Synonym(s)=ethylene response factor 69%2C APETALA2/ethylene-responsive element binding protein 28%2C DLN repressor 77%2C DLN motif protein 77;Note=Similar to AP2 domain containing protein%2C expressed.;Transcript_evidence=AK106987 (DDBJ%2C Best hit);ORF_evidence=Q10QU3 (UniProt);NIAS_FLcDNA=002-120-A04;Oryzabase=10582;Expression=AK106987;TENOR=Os03t0183200-01;KEGG=Os03t0183200-01
Chr03	irgsp1_rep	five_prime_UTR	4368329	4368453	.	-	.	Parent=Os03t0183200-01
Chr03	irgsp1_rep	CDS	4368288	4368328	.	-	0	Parent=Os03t0183200-01
Chr03	irgsp1_rep	CDS	4367363	4367855	.	-	1	Parent=Os03t0183200-01
Chr03	irgsp1_rep	three_prime_UTR	4367273	4367362	.	-	.	Parent=Os03t0183200-01
Chr03	irgsp1_rep	mRNA	4372269	4373460	.	-	.	ID=Os03t0183300-01;Name=Os03t0183300-01;Locus_id=Os03g0183300;CGSNL Gene Symbol=ERF64;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 64;Oryzabase Gene Symbol Synonym(s)=OsERF#064%2C OsERF064%2C OsERF64%2C AP2/EREBP#029%2C AP2/EREBP29%2C OsBIERF4%2C BIERF4;Oryzabase Gene Name Synonym(s)=ethylene response factor 64%2C APETALA2/ethylene-responsive element binding protein 29%2C benzothiadiazole (BTH)-induced ethylene responsive transcriptional factor 4%2C benzothiadiazole-induced ethylene responsive transcriptional factor 4%2C BTH-induced ethylene responsive transcriptional factor 4%2C BTH-induced ERF transcriptional factor 4;Note=Pathogenesis-related transcriptional factor and ERF domain containing protein.;Transcript_evidence=AK106163 (DDBJ%2C Best hit),AK105922 (DDBJ%2C Best hit),AK119553 (DDBJ%2C Best hit);ORF_evidence=Q5MFV0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=001-208-B04,001-205-A05,001-208-C04;Oryzabase=10577;Expression=AK106163;TENOR=Os03t0183300-01;KEGG=Os03t0183300-01
Chr03	irgsp1_rep	five_prime_UTR	4373398	4373460	.	-	.	Parent=Os03t0183300-01
Chr03	irgsp1_rep	CDS	4372408	4373397	.	-	0	Parent=Os03t0183300-01
Chr03	irgsp1_rep	three_prime_UTR	4372269	4372407	.	-	.	Parent=Os03t0183300-01
Chr03	irgsp1_rep	mRNA	4372266	4373458	.	-	.	ID=Os03t0183300-02;Name=Os03t0183300-02;Locus_id=Os03g0183300;CGSNL Gene Symbol=ERF64;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 64;Oryzabase Gene Symbol Synonym(s)=OsERF#064%2C OsERF064%2C OsERF64%2C AP2/EREBP#029%2C AP2/EREBP29%2C OsBIERF4%2C BIERF4;Oryzabase Gene Name Synonym(s)=ethylene response factor 64%2C APETALA2/ethylene-responsive element binding protein 29%2C benzothiadiazole (BTH)-induced ethylene responsive transcriptional factor 4%2C benzothiadiazole-induced ethylene responsive transcriptional factor 4%2C BTH-induced ethylene responsive transcriptional factor 4%2C BTH-induced ERF transcriptional factor 4;Note=Similar to BTH-induced ERF transcriptional factor 4.;Transcript_evidence=AK058349 (DDBJ%2C Best hit);ORF_evidence=Q5MFV0 (UniProt);NIAS_FLcDNA=001-014-E05;Oryzabase=10577;TENOR=Os03t0183300-02
Chr03	irgsp1_rep	five_prime_UTR	4373398	4373458	.	-	.	Parent=Os03t0183300-02
Chr03	irgsp1_rep	CDS	4373161	4373397	.	-	0	Parent=Os03t0183300-02
Chr03	irgsp1_rep	CDS	4372266	4372492	.	-	0	Parent=Os03t0183300-02
Chr03	irgsp1_rep	mRNA	4379668	4380736	.	-	.	ID=Os03t0183500-01;Name=Os03t0183500-01;Locus_id=Os03g0183500;Note=Protein of unknown function DUF581 family protein.;Transcript_evidence=AK063042 (DDBJ%2C Best hit);ORF_evidence=NP_197570.1 (RefSeq);InterPro=Protein of unknown function DUF581 (IPR007650);NIAS_FLcDNA=001-110-D07;Expression=AK063042;TENOR=Os03t0183500-01;KEGG=Os03t0183500-01
Chr03	irgsp1_rep	five_prime_UTR	4380616	4380736	.	-	.	Parent=Os03t0183500-01
Chr03	irgsp1_rep	CDS	4380296	4380615	.	-	0	Parent=Os03t0183500-01
Chr03	irgsp1_rep	CDS	4379959	4380130	.	-	1	Parent=Os03t0183500-01
Chr03	irgsp1_rep	three_prime_UTR	4379668	4379958	.	-	.	Parent=Os03t0183500-01
Chr03	irgsp1_rep	mRNA	4384585	4389310	.	-	.	ID=Os03t0183600-00;Name=Os03t0183600-00;Locus_id=Os03g0183600;CGSNL Gene Symbol=ALAAT2;CGSNL Gene Name=ALANINE AMINOTRANSFERASE 2;Oryzabase Gene Symbol Synonym(s)=OsAlaAT2%2C AlaAT2;Oryzabase Gene Name Synonym(s)=Alanine transaminase 2%2C alanine-aminotransferase2;Note=Similar to Alanine aminotransferase.;Transcript_evidence=Z26322 (DDBJ);ORF_evidence=Q9S768 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Biological Process: 1-aminocyclopropane-1-carboxylate biosynthetic process (GO:0042218),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: 1-aminocyclopropane-1-carboxylate synthase activity (GO:0016847),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=1-aminocyclopropane-1-carboxylate synthase (IPR001176),Aminotransferase%2C class I/classII (IPR004839),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);Oryzabase=20399;TENOR=Os03t0183600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	4389209	4389310	.	-	0	Parent=Os03t0183600-00
Chr03	irgsp1_rep	CDS	4389053	4389103	.	-	0	Parent=Os03t0183600-00
Chr03	irgsp1_rep	CDS	4388911	4388976	.	-	0	Parent=Os03t0183600-00
Chr03	irgsp1_rep	CDS	4388774	4388835	.	-	0	Parent=Os03t0183600-00
Chr03	irgsp1_rep	CDS	4388540	4388618	.	-	1	Parent=Os03t0183600-00
Chr03	irgsp1_rep	CDS	4388057	4388161	.	-	0	Parent=Os03t0183600-00
Chr03	irgsp1_rep	CDS	4387868	4387978	.	-	0	Parent=Os03t0183600-00
Chr03	irgsp1_rep	CDS	4387648	4387785	.	-	0	Parent=Os03t0183600-00
Chr03	irgsp1_rep	CDS	4385933	4386007	.	-	0	Parent=Os03t0183600-00
Chr03	irgsp1_rep	CDS	4385689	4385809	.	-	0	Parent=Os03t0183600-00
Chr03	irgsp1_rep	CDS	4385453	4385607	.	-	2	Parent=Os03t0183600-00
Chr03	irgsp1_rep	CDS	4385291	4385365	.	-	0	Parent=Os03t0183600-00
Chr03	irgsp1_rep	CDS	4384995	4385198	.	-	0	Parent=Os03t0183600-00
Chr03	irgsp1_rep	CDS	4384585	4384701	.	-	0	Parent=Os03t0183600-00
Chr03	irgsp1_rep	mRNA	4397245	4402938	.	+	.	ID=Os03t0183800-01;Name=Os03t0183800-01;Locus_id=Os03g0183800;Note=Similar to Leucine-rich repeat transmembrane protein kinase 1 (Fragment).;Transcript_evidence=AK100621 (DDBJ%2C Best hit);ORF_evidence=O81105 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023108F23;Expression=AK100621;TENOR=Os03t0183800-01;KEGG=Os03t0183800-01
Chr03	irgsp1_rep	five_prime_UTR	4397245	4397475	.	+	.	Parent=Os03t0183800-01
Chr03	irgsp1_rep	CDS	4397476	4397590	.	+	0	Parent=Os03t0183800-01
Chr03	irgsp1_rep	CDS	4398572	4398704	.	+	2	Parent=Os03t0183800-01
Chr03	irgsp1_rep	CDS	4398798	4398869	.	+	1	Parent=Os03t0183800-01
Chr03	irgsp1_rep	CDS	4398952	4399026	.	+	1	Parent=Os03t0183800-01
Chr03	irgsp1_rep	CDS	4399109	4399180	.	+	1	Parent=Os03t0183800-01
Chr03	irgsp1_rep	CDS	4399268	4399339	.	+	1	Parent=Os03t0183800-01
Chr03	irgsp1_rep	CDS	4399464	4399535	.	+	1	Parent=Os03t0183800-01
Chr03	irgsp1_rep	CDS	4399616	4399681	.	+	1	Parent=Os03t0183800-01
Chr03	irgsp1_rep	CDS	4399760	4399825	.	+	1	Parent=Os03t0183800-01
Chr03	irgsp1_rep	CDS	4399902	4400191	.	+	1	Parent=Os03t0183800-01
Chr03	irgsp1_rep	CDS	4400285	4400568	.	+	2	Parent=Os03t0183800-01
Chr03	irgsp1_rep	CDS	4400903	4401174	.	+	0	Parent=Os03t0183800-01
Chr03	irgsp1_rep	CDS	4401624	4401759	.	+	1	Parent=Os03t0183800-01
Chr03	irgsp1_rep	CDS	4402053	4402183	.	+	0	Parent=Os03t0183800-01
Chr03	irgsp1_rep	CDS	4402291	4402447	.	+	1	Parent=Os03t0183800-01
Chr03	irgsp1_rep	CDS	4402547	4402690	.	+	0	Parent=Os03t0183800-01
Chr03	irgsp1_rep	three_prime_UTR	4402691	4402938	.	+	.	Parent=Os03t0183800-01
Chr03	irgsp1_rep	mRNA	4399762	4402933	.	+	.	ID=Os03t0183800-02;Name=Os03t0183800-02;Locus_id=Os03g0183800;Note=Similar to Leucine-rich repeat transmembrane protein kinase 1 (Fragment).;Transcript_evidence=AK112046 (DDBJ%2C Best hit);ORF_evidence=O81105 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-047-C09;Expression=AK112046;TENOR=Os03t0183800-02;KEGG=Os03t0183800-02
Chr03	irgsp1_rep	five_prime_UTR	4399762	4399763	.	+	.	Parent=Os03t0183800-02
Chr03	irgsp1_rep	CDS	4399764	4399825	.	+	0	Parent=Os03t0183800-02
Chr03	irgsp1_rep	CDS	4399902	4400191	.	+	1	Parent=Os03t0183800-02
Chr03	irgsp1_rep	CDS	4400285	4400568	.	+	2	Parent=Os03t0183800-02
Chr03	irgsp1_rep	CDS	4400903	4401174	.	+	0	Parent=Os03t0183800-02
Chr03	irgsp1_rep	CDS	4401624	4401759	.	+	1	Parent=Os03t0183800-02
Chr03	irgsp1_rep	CDS	4402053	4402183	.	+	0	Parent=Os03t0183800-02
Chr03	irgsp1_rep	CDS	4402291	4402447	.	+	1	Parent=Os03t0183800-02
Chr03	irgsp1_rep	CDS	4402547	4402690	.	+	0	Parent=Os03t0183800-02
Chr03	irgsp1_rep	three_prime_UTR	4402691	4402933	.	+	.	Parent=Os03t0183800-02
Chr03	irgsp1_rep	mRNA	4397436	4402841	.	-	.	ID=Os03t0183850-00;Name=Os03t0183850-00;Locus_id=Os03g0183850;Note=Hypothetical protein.;Transcript_evidence=tplb0047d04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0183850-00
Chr03	irgsp1_rep	five_prime_UTR	4402532	4402841	.	-	.	Parent=Os03t0183850-00
Chr03	irgsp1_rep	five_prime_UTR	4402294	4402433	.	-	.	Parent=Os03t0183850-00
Chr03	irgsp1_rep	five_prime_UTR	4402063	4402187	.	-	.	Parent=Os03t0183850-00
Chr03	irgsp1_rep	five_prime_UTR	4401625	4401767	.	-	.	Parent=Os03t0183850-00
Chr03	irgsp1_rep	five_prime_UTR	4400894	4401175	.	-	.	Parent=Os03t0183850-00
Chr03	irgsp1_rep	five_prime_UTR	4400287	4400557	.	-	.	Parent=Os03t0183850-00
Chr03	irgsp1_rep	five_prime_UTR	4399900	4400193	.	-	.	Parent=Os03t0183850-00
Chr03	irgsp1_rep	five_prime_UTR	4399735	4399820	.	-	.	Parent=Os03t0183850-00
Chr03	irgsp1_rep	five_prime_UTR	4399603	4399655	.	-	.	Parent=Os03t0183850-00
Chr03	irgsp1_rep	five_prime_UTR	4399464	4399524	.	-	.	Parent=Os03t0183850-00
Chr03	irgsp1_rep	five_prime_UTR	4399268	4399339	.	-	.	Parent=Os03t0183850-00
Chr03	irgsp1_rep	five_prime_UTR	4399109	4399180	.	-	.	Parent=Os03t0183850-00
Chr03	irgsp1_rep	five_prime_UTR	4398952	4399026	.	-	.	Parent=Os03t0183850-00
Chr03	irgsp1_rep	five_prime_UTR	4398860	4398869	.	-	.	Parent=Os03t0183850-00
Chr03	irgsp1_rep	CDS	4398806	4398859	.	-	0	Parent=Os03t0183850-00
Chr03	irgsp1_rep	CDS	4398576	4398710	.	-	0	Parent=Os03t0183850-00
Chr03	irgsp1_rep	CDS	4397436	4397595	.	-	0	Parent=Os03t0183850-00
Chr03	irgsp1_rep	mRNA	4403063	4405969	.	-	.	ID=Os03t0183900-01;Name=Os03t0183900-01;Locus_id=Os03g0183900;CGSNL Gene Symbol=AHA9;CGSNL Gene Name=H+-ATPASE 9;Oryzabase Gene Symbol Synonym(s)=OSA9%2C OsA9%2C osAHA9%2C AHA9;Oryzabase Gene Name Synonym(s)=plasma membrane H+-ATPase 9%2C PM H+-ATPase 9%2C plasma membrane H+ P-Type ATPase 9;Note=Similar to Plasma membrane H+-ATPase.;Transcript_evidence=AK242894 (DDBJ%2C Best hit);ORF_evidence=Q8RW26 (UniProt);GO=Biological Process: ATP catabolic process (GO:0006200),Biological Process: ATP biosynthetic process (GO:0006754),Biological Process: cation transport (GO:0006812),Biological Process: metabolic process (GO:0008152),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662),Molecular Function: ATPase activity (GO:0016887);InterPro=ATPase%2C P-type%2C H+ transporting proton pump (IPR000695),ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),Haloacid dehalogenase-like hydrolase (IPR005834),ATPase%2C P-type%2C plasma-membrane proton-efflux (IPR006534),HAD-like domain (IPR023214),ATPase%2C P-type%2C  transmembrane domain (IPR023298),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299);NIAS_FLcDNA=J090080L10;Oryzabase=11191;TENOR=Os03t0183900-01;KEGG=Os03t0183900-01 (EC:3.6.3.6)
Chr03	irgsp1_rep	five_prime_UTR	4405968	4405969	.	-	.	Parent=Os03t0183900-01
Chr03	irgsp1_rep	CDS	4405917	4405967	.	-	0	Parent=Os03t0183900-01
Chr03	irgsp1_rep	CDS	4405696	4405800	.	-	0	Parent=Os03t0183900-01
Chr03	irgsp1_rep	CDS	4405450	4405594	.	-	0	Parent=Os03t0183900-01
Chr03	irgsp1_rep	CDS	4404968	4405374	.	-	2	Parent=Os03t0183900-01
Chr03	irgsp1_rep	CDS	4404839	4404871	.	-	0	Parent=Os03t0183900-01
Chr03	irgsp1_rep	CDS	4404683	4404764	.	-	0	Parent=Os03t0183900-01
Chr03	irgsp1_rep	CDS	4404426	4404586	.	-	2	Parent=Os03t0183900-01
Chr03	irgsp1_rep	CDS	4404157	4404330	.	-	0	Parent=Os03t0183900-01
Chr03	irgsp1_rep	CDS	4403860	4404042	.	-	0	Parent=Os03t0183900-01
Chr03	irgsp1_rep	CDS	4403555	4403733	.	-	0	Parent=Os03t0183900-01
Chr03	irgsp1_rep	CDS	4403211	4403307	.	-	1	Parent=Os03t0183900-01
Chr03	irgsp1_rep	three_prime_UTR	4403063	4403210	.	-	.	Parent=Os03t0183900-01
Chr03	irgsp1_rep	mRNA	4403876	4407943	.	+	.	ID=Os03t0183950-00;Name=Os03t0183950-00;Locus_id=Os03g0183950;Note=Hypothetical protein.;Transcript_evidence=tplb0039e05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0183950-00
Chr03	irgsp1_rep	five_prime_UTR	4403876	4404034	.	+	.	Parent=Os03t0183950-00
Chr03	irgsp1_rep	five_prime_UTR	4404151	4404324	.	+	.	Parent=Os03t0183950-00
Chr03	irgsp1_rep	five_prime_UTR	4404400	4404595	.	+	.	Parent=Os03t0183950-00
Chr03	irgsp1_rep	five_prime_UTR	4404693	4404693	.	+	.	Parent=Os03t0183950-00
Chr03	irgsp1_rep	CDS	4404694	4404772	.	+	0	Parent=Os03t0183950-00
Chr03	irgsp1_rep	CDS	4404948	4405373	.	+	2	Parent=Os03t0183950-00
Chr03	irgsp1_rep	CDS	4405449	4405621	.	+	2	Parent=Os03t0183950-00
Chr03	irgsp1_rep	three_prime_UTR	4405622	4405698	.	+	.	Parent=Os03t0183950-00
Chr03	irgsp1_rep	three_prime_UTR	4405910	4406035	.	+	.	Parent=Os03t0183950-00
Chr03	irgsp1_rep	three_prime_UTR	4406118	4406239	.	+	.	Parent=Os03t0183950-00
Chr03	irgsp1_rep	three_prime_UTR	4406331	4406427	.	+	.	Parent=Os03t0183950-00
Chr03	irgsp1_rep	three_prime_UTR	4406755	4406980	.	+	.	Parent=Os03t0183950-00
Chr03	irgsp1_rep	three_prime_UTR	4407057	4407238	.	+	.	Parent=Os03t0183950-00
Chr03	irgsp1_rep	three_prime_UTR	4407360	4407449	.	+	.	Parent=Os03t0183950-00
Chr03	irgsp1_rep	three_prime_UTR	4407540	4407721	.	+	.	Parent=Os03t0183950-00
Chr03	irgsp1_rep	three_prime_UTR	4407832	4407943	.	+	.	Parent=Os03t0183950-00
Chr03	irgsp1_rep	mRNA	4410090	4414779	.	+	.	ID=Os03t0184000-01;Name=Os03t0184000-01;Locus_id=Os03g0184000;RAP-DB Gene Symbol Synonym(s)=OsPDS;RAP-DB Gene Name Synonym(s)=phytoene desaturase;CGSNL Gene Symbol=PDA;CGSNL Gene Name=PHYTOENE DESATURASE;Oryzabase Gene Symbol Synonym(s)=PDS1%2C PDS%2C OsPDS%2C Pds;Oryzabase Gene Name Synonym(s)="Phytoene dehydrogenase%2C chloroplastic/Chromoplastic"%2C Phytoene desaturase;Note=Phytoene desaturase%2C Carotenoid biosynthesis;Transcript_evidence=AK058668 (truncated),Inferred from literature;ORF_evidence=Q0DUI8;GO=Biological Process: carotenoid biosynthetic process (GO:0016117),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: phytoene dehydrogenase activity (GO:0016166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FAD/NAD(P)-binding domain superfamily (IPR036188),Phytoene desaturase (IPR014102),Amine oxidase (IPR002937);NIAS_FLcDNA=001-018-G12 (truncated);Manual Curation=January 24%2C 2020;Literature_PMID=31965382;Oryzabase=6771;TENOR=Os03t0184000-00
Chr03	irgsp1_rep	CDS	4410090	4410293	.	+	0	Parent=Os03t0184000-01
Chr03	irgsp1_rep	CDS	4410368	4410500	.	+	0	Parent=Os03t0184000-01
Chr03	irgsp1_rep	CDS	4410615	4410703	.	+	2	Parent=Os03t0184000-01
Chr03	irgsp1_rep	CDS	4410852	4410909	.	+	0	Parent=Os03t0184000-01
Chr03	irgsp1_rep	CDS	4411395	4411550	.	+	2	Parent=Os03t0184000-01
Chr03	irgsp1_rep	CDS	4411769	4411917	.	+	2	Parent=Os03t0184000-01
Chr03	irgsp1_rep	CDS	4412421	4412540	.	+	0	Parent=Os03t0184000-01
Chr03	irgsp1_rep	CDS	4412726	4412939	.	+	0	Parent=Os03t0184000-01
Chr03	irgsp1_rep	CDS	4413026	4413128	.	+	2	Parent=Os03t0184000-01
Chr03	irgsp1_rep	CDS	4413235	4413282	.	+	1	Parent=Os03t0184000-01
Chr03	irgsp1_rep	CDS	4413480	4413525	.	+	1	Parent=Os03t0184000-01
Chr03	irgsp1_rep	CDS	4413860	4414047	.	+	0	Parent=Os03t0184000-01
Chr03	irgsp1_rep	CDS	4414156	4414318	.	+	1	Parent=Os03t0184000-01
Chr03	irgsp1_rep	CDS	4414440	4414505	.	+	0	Parent=Os03t0184000-01
Chr03	irgsp1_rep	three_prime_UTR	4414506	4414779	.	+	.	Parent=Os03t0184000-01
Chr03	irgsp1_rep	mRNA	4416654	4419091	.	+	.	ID=Os03t0184100-01;Name=Os03t0184100-01;Locus_id=Os03g0184100;Note=Conserved hypothetical protein.;Transcript_evidence=AK067400 (DDBJ%2C Best hit);ORF_evidence=A2XDA2 (UniProt);NIAS_FLcDNA=J013106B15;Expression=AK067400;TENOR=Os03t0184100-01;KEGG=Os03t0184100-01
Chr03	irgsp1_rep	five_prime_UTR	4416654	4416843	.	+	.	Parent=Os03t0184100-01
Chr03	irgsp1_rep	five_prime_UTR	4416982	4417132	.	+	.	Parent=Os03t0184100-01
Chr03	irgsp1_rep	CDS	4417133	4417195	.	+	0	Parent=Os03t0184100-01
Chr03	irgsp1_rep	CDS	4417608	4418010	.	+	0	Parent=Os03t0184100-01
Chr03	irgsp1_rep	CDS	4418447	4418553	.	+	2	Parent=Os03t0184100-01
Chr03	irgsp1_rep	CDS	4418671	4418736	.	+	0	Parent=Os03t0184100-01
Chr03	irgsp1_rep	three_prime_UTR	4418737	4419091	.	+	.	Parent=Os03t0184100-01
Chr03	irgsp1_rep	mRNA	4420240	4420995	.	+	.	ID=Os03t0184201-00;Name=Os03t0184201-00;Locus_id=Os03g0184201;Note=Hypothetical conserved gene.;Transcript_evidence=AK111071 (DDBJ%2C Secondary hit);ORF_evidence=B9G5B6 (UniProt);Expression=AK111071;TENOR=Os03t0184201-00;KEGG=Os03t0184201-00
Chr03	irgsp1_rep	five_prime_UTR	4420240	4420240	.	+	.	Parent=Os03t0184201-00
Chr03	irgsp1_rep	CDS	4420241	4420572	.	+	0	Parent=Os03t0184201-00
Chr03	irgsp1_rep	CDS	4420666	4420690	.	+	1	Parent=Os03t0184201-00
Chr03	irgsp1_rep	three_prime_UTR	4420691	4420995	.	+	.	Parent=Os03t0184201-00
Chr03	irgsp1_rep	mRNA	4428838	4434161	.	+	.	ID=Os03t0184300-01;Name=Os03t0184300-01;Locus_id=Os03g0184300;CGSNL Gene Symbol=PGSIP-A2;CGSNL Gene Name=PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN A2;Oryzabase Gene Symbol Synonym(s)=OsPGSIP-A2;Oryzabase Gene Name Synonym(s)=plant glycogenin-like starch initiation protein A2;Note=Conserved hypothetical protein.;Transcript_evidence=AK120569 (DDBJ%2C Best hit);ORF_evidence=Q94HG3 (UniProt);NIAS_FLcDNA=J013134B09;Oryzabase=23272;TENOR=Os03t0184300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	4428838	4428934	.	+	.	Parent=Os03t0184300-01
Chr03	irgsp1_rep	CDS	4428935	4429206	.	+	0	Parent=Os03t0184300-01
Chr03	irgsp1_rep	CDS	4429325	4429379	.	+	1	Parent=Os03t0184300-01
Chr03	irgsp1_rep	three_prime_UTR	4429380	4429958	.	+	.	Parent=Os03t0184300-01
Chr03	irgsp1_rep	three_prime_UTR	4432825	4434161	.	+	.	Parent=Os03t0184300-01
Chr03	irgsp1_rep	mRNA	4428848	4433996	.	+	.	ID=Os03t0184300-02;Name=Os03t0184300-02;Locus_id=Os03g0184300;CGSNL Gene Symbol=PGSIP-A2;CGSNL Gene Name=PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN A2;Oryzabase Gene Symbol Synonym(s)=OsPGSIP-A2;Oryzabase Gene Name Synonym(s)=plant glycogenin-like starch initiation protein A2;Note=Glycosyl transferase%2C family 8 protein.;Transcript_evidence=AK119613 (DDBJ%2C Best hit);ORF_evidence=Q94HG3 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 8 (IPR002495);NIAS_FLcDNA=002-117-G04;Oryzabase=23272;Expression=AK119613;TENOR=Os03t0184300-02;KEGG=Os03t0184300-02 (EC:2.4.1.186)
Chr03	irgsp1_rep	five_prime_UTR	4428848	4428934	.	+	.	Parent=Os03t0184300-02
Chr03	irgsp1_rep	CDS	4428935	4429201	.	+	0	Parent=Os03t0184300-02
Chr03	irgsp1_rep	CDS	4429325	4429958	.	+	0	Parent=Os03t0184300-02
Chr03	irgsp1_rep	CDS	4432825	4433768	.	+	2	Parent=Os03t0184300-02
Chr03	irgsp1_rep	three_prime_UTR	4433769	4433996	.	+	.	Parent=Os03t0184300-02
Chr03	irgsp1_rep	mRNA	4434560	4437813	.	+	.	ID=Os03t0184400-01;Name=Os03t0184400-01;Locus_id=Os03g0184400;Note=Leucine-rich repeat%2C plant specific containing protein.;Transcript_evidence=AK100729 (DDBJ%2C Best hit);ORF_evidence=NP_188554.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Malectin-like carbohydrate-binding domain (IPR024788);NIAS_FLcDNA=J023117I04;Expression=AK100729;TENOR=Os03t0184400-01;KEGG=Os03t0184400-01
Chr03	irgsp1_rep	five_prime_UTR	4434560	4434653	.	+	.	Parent=Os03t0184400-01
Chr03	irgsp1_rep	CDS	4434654	4434762	.	+	0	Parent=Os03t0184400-01
Chr03	irgsp1_rep	CDS	4435067	4435607	.	+	2	Parent=Os03t0184400-01
Chr03	irgsp1_rep	CDS	4435689	4436152	.	+	1	Parent=Os03t0184400-01
Chr03	irgsp1_rep	CDS	4436574	4436709	.	+	2	Parent=Os03t0184400-01
Chr03	irgsp1_rep	CDS	4436829	4436900	.	+	1	Parent=Os03t0184400-01
Chr03	irgsp1_rep	CDS	4436990	4437058	.	+	1	Parent=Os03t0184400-01
Chr03	irgsp1_rep	CDS	4437153	4437224	.	+	1	Parent=Os03t0184400-01
Chr03	irgsp1_rep	CDS	4437314	4437385	.	+	1	Parent=Os03t0184400-01
Chr03	irgsp1_rep	CDS	4437485	4437509	.	+	1	Parent=Os03t0184400-01
Chr03	irgsp1_rep	three_prime_UTR	4437510	4437813	.	+	.	Parent=Os03t0184400-01
Chr03	irgsp1_rep	mRNA	4437782	4439874	.	-	.	ID=Os03t0184500-01;Name=Os03t0184500-01;Locus_id=Os03g0184500;Note=Transcriptional factor B3 family protein.;Transcript_evidence=AK122017 (DDBJ%2C Best hit);ORF_evidence=F1DJX4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=J033111M07;Expression=AK122017;TENOR=Os03t0184500-01;KEGG=Os03t0184500-01
Chr03	irgsp1_rep	five_prime_UTR	4439766	4439874	.	-	.	Parent=Os03t0184500-01
Chr03	irgsp1_rep	CDS	4439619	4439765	.	-	0	Parent=Os03t0184500-01
Chr03	irgsp1_rep	CDS	4439392	4439493	.	-	0	Parent=Os03t0184500-01
Chr03	irgsp1_rep	CDS	4438890	4438921	.	-	0	Parent=Os03t0184500-01
Chr03	irgsp1_rep	CDS	4438599	4438773	.	-	1	Parent=Os03t0184500-01
Chr03	irgsp1_rep	CDS	4438294	4438500	.	-	0	Parent=Os03t0184500-01
Chr03	irgsp1_rep	CDS	4438130	4438180	.	-	0	Parent=Os03t0184500-01
Chr03	irgsp1_rep	three_prime_UTR	4437782	4438129	.	-	.	Parent=Os03t0184500-01
Chr03	irgsp1_rep	mRNA	4441960	4443828	.	+	.	ID=Os03t0184550-01;Name=Os03t0184550-01;Locus_id=Os03g0184550;Note=Similar to Dihydroflavonol-4-reductase.;Transcript_evidence=AK243288 (DDBJ%2C Best hit);ORF_evidence=B4FED4 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J100052J15;TENOR=Os03t0184550-01;KEGG=Os03t0184550-01 (EC:1.1.1.170)
Chr03	irgsp1_rep	five_prime_UTR	4441960	4442043	.	+	.	Parent=Os03t0184550-01
Chr03	irgsp1_rep	CDS	4442044	4442328	.	+	0	Parent=Os03t0184550-01
Chr03	irgsp1_rep	CDS	4442491	4442619	.	+	0	Parent=Os03t0184550-01
Chr03	irgsp1_rep	CDS	4442828	4442992	.	+	0	Parent=Os03t0184550-01
Chr03	irgsp1_rep	CDS	4443138	4443443	.	+	0	Parent=Os03t0184550-01
Chr03	irgsp1_rep	CDS	4443600	4443740	.	+	0	Parent=Os03t0184550-01
Chr03	irgsp1_rep	three_prime_UTR	4443741	4443828	.	+	.	Parent=Os03t0184550-01
Chr03	irgsp1_rep	mRNA	4444015	4446466	.	+	.	ID=Os03t0184600-01;Name=Os03t0184600-01;Locus_id=Os03g0184600;Note=Similar to Dihydroflavonol-4-reductase.;Transcript_evidence=AK065264 (DDBJ%2C Best hit);ORF_evidence=B4FED4 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013002K08;TENOR=Os03t0184600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	4444015	4444088	.	+	.	Parent=Os03t0184600-01
Chr03	irgsp1_rep	CDS	4444089	4444382	.	+	0	Parent=Os03t0184600-01
Chr03	irgsp1_rep	three_prime_UTR	4444383	4444768	.	+	.	Parent=Os03t0184600-01
Chr03	irgsp1_rep	three_prime_UTR	4445446	4446052	.	+	.	Parent=Os03t0184600-01
Chr03	irgsp1_rep	three_prime_UTR	4446141	4446466	.	+	.	Parent=Os03t0184600-01
Chr03	irgsp1_rep	mRNA	4446728	4449163	.	-	.	ID=Os03t0184700-01;Name=Os03t0184700-01;Locus_id=Os03g0184700;CGSNL Gene Symbol=ORC2;CGSNL Gene Name=ORIGIN RECOGNITION COMPLEX 2;Oryzabase Gene Symbol Synonym(s)=OsORC2;Oryzabase Gene Name Synonym(s)=Origin recognition complex subunit 2%2C ORC subunit 2;Note=Origin recognition complex subunit 2 (Origin recognition complex2).;Transcript_evidence=AK242821 (DDBJ%2C Best hit);ORF_evidence=Q9XFD6 (UniProt);GO=Biological Process: DNA replication (GO:0006260),Cellular Component: origin recognition complex (GO:0000808),Cellular Component: nucleus (GO:0005634);InterPro=Origin recognition complex%2C subunit 2 (IPR007220);NIAS_FLcDNA=J090063M04;Oryzabase=9122;TENOR=Os03t0184700-01;KEGG=Os03t0184700-01
Chr03	irgsp1_rep	five_prime_UTR	4449101	4449163	.	-	.	Parent=Os03t0184700-01
Chr03	irgsp1_rep	five_prime_UTR	4448886	4448974	.	-	.	Parent=Os03t0184700-01
Chr03	irgsp1_rep	CDS	4448703	4448885	.	-	0	Parent=Os03t0184700-01
Chr03	irgsp1_rep	CDS	4448511	4448617	.	-	0	Parent=Os03t0184700-01
Chr03	irgsp1_rep	CDS	4448297	4448429	.	-	1	Parent=Os03t0184700-01
Chr03	irgsp1_rep	CDS	4447439	4447730	.	-	0	Parent=Os03t0184700-01
Chr03	irgsp1_rep	CDS	4447135	4447363	.	-	2	Parent=Os03t0184700-01
Chr03	irgsp1_rep	CDS	4446864	4447059	.	-	1	Parent=Os03t0184700-01
Chr03	irgsp1_rep	three_prime_UTR	4446728	4446863	.	-	.	Parent=Os03t0184700-01
Chr03	irgsp1_rep	mRNA	4464190	4465095	.	+	.	ID=Os03t0185000-00;Name=Os03t0185000-00;Locus_id=Os03g0185000;Oryzabase Gene Name Synonym(s)=Probable serine acetyltransferase 3;Note=Similar to Chloroplast serine acetyltransferase.;Transcript_evidence=Q0DUI1 (UniProt);ORF_evidence=Q0DUI1 (UniProt);GO=Biological Process: cysteine biosynthetic process from serine (GO:0006535),Cellular Component: cytoplasm (GO:0005737),Molecular Function: serine O-acetyltransferase activity (GO:0009001),Molecular Function: transferase activity (GO:0016740);InterPro=Bacterial transferase hexapeptide repeat (IPR001451),Serine acetyltransferase%2C N-terminal (IPR010493),Trimeric LpxA-like (IPR011004),Hexapeptide transferase%2C conserved site (IPR018357);Oryzabase=21969;TENOR=Os03t0185000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	4464190	4465095	.	+	0	Parent=Os03t0185000-00
Chr03	irgsp1_rep	mRNA	4470567	4476128	.	-	.	ID=Os03t0185200-01;Name=Os03t0185200-01;Locus_id=Os03g0185200;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK069314 (DDBJ%2C Best hit);ORF_evidence=Q10QS4 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J023011A15;Expression=AK069314;TENOR=Os03t0185200-01;KEGG=Os03t0185200-01
Chr03	irgsp1_rep	five_prime_UTR	4476110	4476128	.	-	.	Parent=Os03t0185200-01
Chr03	irgsp1_rep	CDS	4474688	4476109	.	-	0	Parent=Os03t0185200-01
Chr03	irgsp1_rep	three_prime_UTR	4474684	4474687	.	-	.	Parent=Os03t0185200-01
Chr03	irgsp1_rep	three_prime_UTR	4473766	4474264	.	-	.	Parent=Os03t0185200-01
Chr03	irgsp1_rep	three_prime_UTR	4473078	4473141	.	-	.	Parent=Os03t0185200-01
Chr03	irgsp1_rep	three_prime_UTR	4472919	4472989	.	-	.	Parent=Os03t0185200-01
Chr03	irgsp1_rep	three_prime_UTR	4472754	4472807	.	-	.	Parent=Os03t0185200-01
Chr03	irgsp1_rep	three_prime_UTR	4470567	4470712	.	-	.	Parent=Os03t0185200-01
Chr03	irgsp1_rep	mRNA	4471002	4471950	.	-	.	ID=Os03t0185300-01;Name=Os03t0185300-01;Locus_id=Os03g0185300;Note=Similar to Mitochondrial import inner membrane translocase subunit Tim17 family protein%2C expressed.;Transcript_evidence=AK061059 (DDBJ%2C Best hit);ORF_evidence=Q10QS4 (UniProt);NIAS_FLcDNA=006-205-H10;TENOR=Os03t0185300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	4471949	4471950	.	-	.	Parent=Os03t0185300-01
Chr03	irgsp1_rep	CDS	4471622	4471948	.	-	0	Parent=Os03t0185300-01
Chr03	irgsp1_rep	three_prime_UTR	4471002	4471621	.	-	.	Parent=Os03t0185300-01
Chr03	irgsp1_rep	mRNA	4479676	4481247	.	-	.	ID=Os03t0185400-01;Name=Os03t0185400-01;Locus_id=Os03g0185400;Note=Protein of unknown function DUF1677%2C Oryza sativa family protein.;Transcript_evidence=AK121937 (DDBJ%2C Best hit);ORF_evidence=A3AEW3 (UniProt);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);NIAS_FLcDNA=J033107C12;Expression=AK121937;TENOR=Os03t0185400-01;KEGG=Os03t0185400-01
Chr03	irgsp1_rep	five_prime_UTR	4481212	4481247	.	-	.	Parent=Os03t0185400-01
Chr03	irgsp1_rep	CDS	4480963	4481211	.	-	0	Parent=Os03t0185400-01
Chr03	irgsp1_rep	CDS	4479859	4480890	.	-	0	Parent=Os03t0185400-01
Chr03	irgsp1_rep	three_prime_UTR	4479676	4479858	.	-	.	Parent=Os03t0185400-01
Chr03	irgsp1_rep	mRNA	4486362	4489500	.	+	.	ID=Os03t0185500-01;Name=Os03t0185500-01;Locus_id=Os03g0185500;Note=Similar to binding protein.;Transcript_evidence=AK106310 (DDBJ%2C Best hit);ORF_evidence=XP_002869156.1 (RefSeq);GO=Biological Process: GPI anchor metabolic process (GO:0006505),Biological Process: intracellular protein transport (GO:0006886),Cellular Component: intrinsic to endoplasmic reticulum membrane (GO:0031227),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=GPI inositol-deacylase PGAP1-like (IPR012908);NIAS_FLcDNA=002-101-D02;TENOR=Os03t0185500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	4486362	4487327	.	+	0	Parent=Os03t0185500-01
Chr03	irgsp1_rep	CDS	4487486	4487527	.	+	0	Parent=Os03t0185500-01
Chr03	irgsp1_rep	CDS	4487709	4487785	.	+	0	Parent=Os03t0185500-01
Chr03	irgsp1_rep	CDS	4487884	4487968	.	+	1	Parent=Os03t0185500-01
Chr03	irgsp1_rep	CDS	4488031	4488114	.	+	0	Parent=Os03t0185500-01
Chr03	irgsp1_rep	CDS	4488201	4488302	.	+	0	Parent=Os03t0185500-01
Chr03	irgsp1_rep	CDS	4488394	4488492	.	+	0	Parent=Os03t0185500-01
Chr03	irgsp1_rep	CDS	4489007	4489132	.	+	0	Parent=Os03t0185500-01
Chr03	irgsp1_rep	three_prime_UTR	4489133	4489500	.	+	.	Parent=Os03t0185500-01
Chr03	irgsp1_rep	mRNA	4489695	4490510	.	+	.	ID=Os03t0185600-01;Name=Os03t0185600-01;Locus_id=Os03g0185600;CGSNL Gene Symbol=THI26;CGSNL Gene Name=THIONIN 26;Oryzabase Gene Symbol Synonym(s)=OsTHI26%2C OsTHION26%2C THION26;Oryzabase Gene Name Synonym(s)=Thionin 26;Note=Conserved hypothetical protein.;Transcript_evidence=AK240954 (DDBJ%2C Best hit);ORF_evidence=NP_001049198.1 (RefSeq);NIAS_FLcDNA=J065044H12;Oryzabase=19267;TENOR=Os03t0185600-01;KEGG=Os03t0185600-01
Chr03	irgsp1_rep	five_prime_UTR	4489695	4489950	.	+	.	Parent=Os03t0185600-01
Chr03	irgsp1_rep	CDS	4489951	4490328	.	+	0	Parent=Os03t0185600-01
Chr03	irgsp1_rep	three_prime_UTR	4490329	4490510	.	+	.	Parent=Os03t0185600-01
Chr03	irgsp1_rep	mRNA	4492084	4494048	.	-	.	ID=Os03t0185700-01;Name=Os03t0185700-01;Locus_id=Os03g0185700;Note=Transferase family protein.;Transcript_evidence=AK108939 (DDBJ%2C Best hit);ORF_evidence=A2XDB3 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=002-153-B05;Expression=AK108939;TENOR=Os03t0185700-01;KEGG=Os03t0185700-01
Chr03	irgsp1_rep	five_prime_UTR	4494018	4494048	.	-	.	Parent=Os03t0185700-01
Chr03	irgsp1_rep	CDS	4492647	4494017	.	-	0	Parent=Os03t0185700-01
Chr03	irgsp1_rep	three_prime_UTR	4492084	4492646	.	-	.	Parent=Os03t0185700-01
Chr03	irgsp1_rep	mRNA	4494724	4495491	.	+	.	ID=Os03t0185800-01;Name=Os03t0185800-01;Locus_id=Os03g0185800;Note=Conserved hypothetical protein.;Transcript_evidence=AK108006 (DDBJ%2C Best hit);ORF_evidence=Q8H503 (UniProt);NIAS_FLcDNA=002-135-G11;TENOR=Os03t0185800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	4494724	4495013	.	+	.	Parent=Os03t0185800-01
Chr03	irgsp1_rep	CDS	4495014	4495334	.	+	0	Parent=Os03t0185800-01
Chr03	irgsp1_rep	three_prime_UTR	4495335	4495491	.	+	.	Parent=Os03t0185800-01
Chr03	irgsp1_rep	mRNA	4495522	4496049	.	-	.	ID=Os03t0185950-00;Name=Os03t0185950-00;Locus_id=Os03g0185950;Note=Conserved hypothetical protein.;Transcript_evidence=EU968703 (DDBJ);ORF_evidence=B9EVQ7 (UniProt);TENOR=Os03t0185950-00
Chr03	irgsp1_rep	five_prime_UTR	4496003	4496049	.	-	.	Parent=Os03t0185950-00
Chr03	irgsp1_rep	CDS	4495679	4496002	.	-	0	Parent=Os03t0185950-00
Chr03	irgsp1_rep	three_prime_UTR	4495522	4495678	.	-	.	Parent=Os03t0185950-00
Chr03	irgsp1_rep	mRNA	4496734	4500824	.	+	.	ID=Os03t0186100-01;Name=Os03t0186100-01;Locus_id=Os03g0186100;Oryzabase Gene Symbol Synonym(s)=UroS;Oryzabase Gene Name Synonym(s)=Uroporphyrinogen-III synthase;Note=Similar to Uroporphyrinogen III synthase.;Transcript_evidence=AK107127 (DDBJ%2C Best hit);ORF_evidence=Q10QR9 (UniProt);GO=Biological Process: tetrapyrrole biosynthetic process (GO:0033014),Molecular Function: uroporphyrinogen-III synthase activity (GO:0004852);InterPro=Tetrapyrrole biosynthesis%2C uroporphyrinogen III synthase (IPR003754);NIAS_FLcDNA=002-124-B12;Oryzabase=19970;Expression=AK107127;TENOR=Os03t0186100-01;KEGG=Os03t0186100-01 (EC:4.2.1.75)
Chr03	irgsp1_rep	CDS	4496734	4496928	.	+	0	Parent=Os03t0186100-01
Chr03	irgsp1_rep	CDS	4498216	4498303	.	+	0	Parent=Os03t0186100-01
Chr03	irgsp1_rep	CDS	4498468	4498534	.	+	2	Parent=Os03t0186100-01
Chr03	irgsp1_rep	CDS	4498774	4498892	.	+	1	Parent=Os03t0186100-01
Chr03	irgsp1_rep	CDS	4499022	4499117	.	+	2	Parent=Os03t0186100-01
Chr03	irgsp1_rep	CDS	4499232	4499287	.	+	2	Parent=Os03t0186100-01
Chr03	irgsp1_rep	CDS	4499613	4499698	.	+	0	Parent=Os03t0186100-01
Chr03	irgsp1_rep	CDS	4500127	4500261	.	+	1	Parent=Os03t0186100-01
Chr03	irgsp1_rep	CDS	4500429	4500480	.	+	1	Parent=Os03t0186100-01
Chr03	irgsp1_rep	CDS	4500559	4500573	.	+	0	Parent=Os03t0186100-01
Chr03	irgsp1_rep	three_prime_UTR	4500574	4500824	.	+	.	Parent=Os03t0186100-01
Chr03	irgsp1_rep	mRNA	4513398	4518517	.	+	.	ID=Os03t0186500-01;Name=Os03t0186500-01;Locus_id=Os03g0186500;Note=Myoactive tetradecapeptides family protein.;Transcript_evidence=AK111688 (DDBJ%2C Best hit);ORF_evidence=B9F5K5 (UniProt);InterPro=PapD-like (IPR008962),Protein of unknown function DUF3651%2C TMEM131 (IPR022113);NIAS_FLcDNA=J013170G06;Expression=AK111688;TENOR=Os03t0186500-01;KEGG=Os03t0186500-01
Chr03	irgsp1_rep	five_prime_UTR	4513398	4513457	.	+	.	Parent=Os03t0186500-01
Chr03	irgsp1_rep	CDS	4513458	4513639	.	+	0	Parent=Os03t0186500-01
Chr03	irgsp1_rep	CDS	4513971	4515684	.	+	1	Parent=Os03t0186500-01
Chr03	irgsp1_rep	CDS	4516392	4517476	.	+	0	Parent=Os03t0186500-01
Chr03	irgsp1_rep	CDS	4517564	4518509	.	+	1	Parent=Os03t0186500-01
Chr03	irgsp1_rep	three_prime_UTR	4518510	4518517	.	+	.	Parent=Os03t0186500-01
Chr03	irgsp1_rep	mRNA	4513485	4517715	.	+	.	ID=Os03t0186500-02;Name=Os03t0186500-02;Locus_id=Os03g0186500;Note=Hypothetical conserved gene.;Transcript_evidence=AK111695 (DDBJ%2C Best hit);ORF_evidence=B9F5K5 (UniProt);InterPro=Protein of unknown function DUF3651%2C TMEM131 (IPR022113);NIAS_FLcDNA=J023007A04;TENOR=Os03t0186500-02
Chr03	irgsp1_rep	five_prime_UTR	4513485	4513493	.	+	.	Parent=Os03t0186500-02
Chr03	irgsp1_rep	CDS	4513494	4513639	.	+	0	Parent=Os03t0186500-02
Chr03	irgsp1_rep	CDS	4513971	4515684	.	+	1	Parent=Os03t0186500-02
Chr03	irgsp1_rep	CDS	4516392	4517476	.	+	0	Parent=Os03t0186500-02
Chr03	irgsp1_rep	CDS	4517564	4517715	.	+	1	Parent=Os03t0186500-02
Chr03	irgsp1_rep	mRNA	4516646	4518521	.	+	.	ID=Os03t0186500-03;Name=Os03t0186500-03;Locus_id=Os03g0186500;Note=Hypothetical conserved gene.;Transcript_evidence=AK112037 (DDBJ%2C Best hit);ORF_evidence=B9F5K5 (UniProt);NIAS_FLcDNA=001-042-D02;Expression=AK112037;TENOR=Os03t0186500-03;KEGG=Os03t0186500-03
Chr03	irgsp1_rep	five_prime_UTR	4516646	4516646	.	+	.	Parent=Os03t0186500-03
Chr03	irgsp1_rep	CDS	4516647	4517476	.	+	0	Parent=Os03t0186500-03
Chr03	irgsp1_rep	CDS	4517564	4518509	.	+	1	Parent=Os03t0186500-03
Chr03	irgsp1_rep	three_prime_UTR	4518510	4518521	.	+	.	Parent=Os03t0186500-03
Chr03	irgsp1_rep	mRNA	4519405	4525692	.	-	.	ID=Os03t0186600-01;Name=Os03t0186600-01;Locus_id=Os03g0186600;CGSNL Gene Symbol=MADS47;CGSNL Gene Name=MADS BOX GENE 47;Oryzabase Gene Symbol Synonym(s)=OsMADS47%2C OsMDP1%2C MDP%2C MDP1;Oryzabase Gene Name Synonym(s)=MADS box gene47%2C MADS-domain-contaiing protein1%2C MADS-domain-containing protein 1%2C MADS-box transcription factor 47%2C MADS-DOMAIN-CONTAIING PROTEIN1%2C MADS domain protein 1;Note=Transcription factor%2C MADS-box domain containing protein.;Transcript_evidence=AK242211 (DDBJ%2C Best hit);ORF_evidence=Q5K4R0-2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box (IPR002100),Transcription factor%2C K-box (IPR002487);NIAS_FLcDNA=J075171C16;Oryzabase=3102;TENOR=Os03t0186600-01;KEGG=Os03t0186600-01
Chr03	irgsp1_rep	five_prime_UTR	4525475	4525692	.	-	.	Parent=Os03t0186600-01
Chr03	irgsp1_rep	CDS	4525236	4525474	.	-	0	Parent=Os03t0186600-01
Chr03	irgsp1_rep	CDS	4521353	4521431	.	-	1	Parent=Os03t0186600-01
Chr03	irgsp1_rep	CDS	4521038	4521102	.	-	0	Parent=Os03t0186600-01
Chr03	irgsp1_rep	CDS	4520578	4520677	.	-	1	Parent=Os03t0186600-01
Chr03	irgsp1_rep	CDS	4520451	4520492	.	-	0	Parent=Os03t0186600-01
Chr03	irgsp1_rep	CDS	4520264	4520305	.	-	0	Parent=Os03t0186600-01
Chr03	irgsp1_rep	CDS	4519965	4520119	.	-	0	Parent=Os03t0186600-01
Chr03	irgsp1_rep	CDS	4519808	4519832	.	-	1	Parent=Os03t0186600-01
Chr03	irgsp1_rep	three_prime_UTR	4519405	4519807	.	-	.	Parent=Os03t0186600-01
Chr03	irgsp1_rep	mRNA	4532886	4536584	.	+	.	ID=Os03t0186800-01;Name=Os03t0186800-01;Locus_id=Os03g0186800;Note=Modifier of rudimentary%2C Modr family protein.;Transcript_evidence=AK100356 (DDBJ%2C Best hit);ORF_evidence=Q10QR5 (UniProt);InterPro=Modifier of rudimentary%2C Modr (IPR009851);NIAS_FLcDNA=J023083K06;Expression=AK100356;TENOR=Os03t0186800-01;KEGG=Os03t0186800-01
Chr03	irgsp1_rep	five_prime_UTR	4532886	4533071	.	+	.	Parent=Os03t0186800-01
Chr03	irgsp1_rep	five_prime_UTR	4533714	4533727	.	+	.	Parent=Os03t0186800-01
Chr03	irgsp1_rep	CDS	4533728	4533753	.	+	0	Parent=Os03t0186800-01
Chr03	irgsp1_rep	CDS	4534204	4534422	.	+	1	Parent=Os03t0186800-01
Chr03	irgsp1_rep	CDS	4534894	4534981	.	+	1	Parent=Os03t0186800-01
Chr03	irgsp1_rep	CDS	4535297	4535336	.	+	0	Parent=Os03t0186800-01
Chr03	irgsp1_rep	CDS	4535472	4535518	.	+	2	Parent=Os03t0186800-01
Chr03	irgsp1_rep	CDS	4535677	4535797	.	+	0	Parent=Os03t0186800-01
Chr03	irgsp1_rep	CDS	4536144	4536304	.	+	2	Parent=Os03t0186800-01
Chr03	irgsp1_rep	three_prime_UTR	4536305	4536584	.	+	.	Parent=Os03t0186800-01
Chr03	irgsp1_rep	mRNA	4541351	4543092	.	+	.	ID=Os03t0186900-01;Name=Os03t0186900-01;Locus_id=Os03g0186900;RAP-DB Gene Symbol Synonym(s)=OsAP25;RAP-DB Gene Name Synonym(s)=aspartic protease 25;CGSNL Gene Symbol=RADC1;CGSNL Gene Name=RICE ANTHER DOWN-REGULATED BY CHILLING 1;Oryzabase Gene Symbol Synonym(s)=OsAP25%2C Radc1%2C OsRADC1%2C AP25;Oryzabase Gene Name Synonym(s)=aspartic protease 25%2C Aspartic Protease25%2C rice anther down-regulated by chilling 1;Note=Aspartic proteinase%2C Promotion of programmed cell death;Transcript_evidence=AK062232,AK120050;ORF_evidence=Q6F4N5;InterPro=Aspartic peptidase domain superfamily (IPR021109),Xylanase inhibitor%2C N-terminal (IPR032861),Peptidase family A1 domain (IPR033121),Xylanase inhibitor%2C C-terminal (IPR032799);NIAS_FLcDNA=001-047-D08,J013000A21;Manual Curation=October 2%2C 2020;Literature_PMID=32995857,23385589;Oryzabase=13453;Expression=AK062232;TENOR=Os03t0186900-01;KEGG=Os03t0186900-01
Chr03	irgsp1_rep	five_prime_UTR	4541351	4541414	.	+	.	Parent=Os03t0186900-01
Chr03	irgsp1_rep	CDS	4541415	4542731	.	+	0	Parent=Os03t0186900-01
Chr03	irgsp1_rep	three_prime_UTR	4542732	4543092	.	+	.	Parent=Os03t0186900-01
Chr03	irgsp1_rep	mRNA	4543174	4545072	.	-	.	ID=Os03t0186950-01;Name=Os03t0186950-01;Locus_id=Os03g0186950;Note=Similar to CUTA.;Transcript_evidence=AK242141 (DDBJ%2C Best hit);ORF_evidence=Q109R6 (UniProt);GO=Biological Process: response to metal ion (GO:0010038);InterPro=Divalent ion tolerance protein%2C CutA (IPR004323),Nitrogen regulatory PII-like%2C alpha/beta (IPR011322);NIAS_FLcDNA=J075150I19;TENOR=Os03t0186950-01;KEGG=Os03t0186950-01
Chr03	irgsp1_rep	five_prime_UTR	4545071	4545072	.	-	.	Parent=Os03t0186950-01
Chr03	irgsp1_rep	CDS	4544907	4545070	.	-	0	Parent=Os03t0186950-01
Chr03	irgsp1_rep	CDS	4544580	4544671	.	-	1	Parent=Os03t0186950-01
Chr03	irgsp1_rep	CDS	4544256	4544318	.	-	2	Parent=Os03t0186950-01
Chr03	irgsp1_rep	CDS	4543812	4543843	.	-	2	Parent=Os03t0186950-01
Chr03	irgsp1_rep	CDS	4543569	4543663	.	-	0	Parent=Os03t0186950-01
Chr03	irgsp1_rep	CDS	4543317	4543401	.	-	1	Parent=Os03t0186950-01
Chr03	irgsp1_rep	three_prime_UTR	4543174	4543316	.	-	.	Parent=Os03t0186950-01
Chr03	irgsp1_rep	mRNA	4545306	4547966	.	+	.	ID=Os03t0187000-01;Name=Os03t0187000-01;Locus_id=Os03g0187000;Note=Similar to EMB514.;Transcript_evidence=AK059827 (DDBJ%2C Best hit);ORF_evidence=Q8L557 (UniProt);GO=Biological Process: amine metabolic process (GO:0009308),Molecular Function: copper ion binding (GO:0005507),Molecular Function: quinone binding (GO:0048038);InterPro=Copper amine oxidase%2C N2/N3-terminal (IPR015801),Protein of unknown function DUF3223 (IPR021602);NIAS_FLcDNA=006-205-G11;Expression=AK059827;TENOR=Os03t0187000-01;KEGG=Os03t0187000-01
Chr03	irgsp1_rep	five_prime_UTR	4545306	4545360	.	+	.	Parent=Os03t0187000-01
Chr03	irgsp1_rep	CDS	4545361	4545720	.	+	0	Parent=Os03t0187000-01
Chr03	irgsp1_rep	CDS	4547373	4547711	.	+	0	Parent=Os03t0187000-01
Chr03	irgsp1_rep	three_prime_UTR	4547712	4547966	.	+	.	Parent=Os03t0187000-01
Chr03	irgsp1_rep	mRNA	4555660	4559410	.	+	.	ID=Os03t0187100-00;Name=Os03t0187100-00;Locus_id=Os03g0187100;Note=Hypothetical conserved gene.;Transcript_evidence=BT018563 (DDBJ);ORF_evidence=Q10QQ9 (UniProt);InterPro=Occludin/RNA polymerase II elongation factor%2C ELL domain (IPR010844);TENOR=Os03t0187100-00;KEGG=Os03t0187100-00
Chr03	irgsp1_rep	CDS	4555660	4557782	.	+	0	Parent=Os03t0187100-00
Chr03	irgsp1_rep	CDS	4558314	4558391	.	+	1	Parent=Os03t0187100-00
Chr03	irgsp1_rep	CDS	4558539	4558650	.	+	1	Parent=Os03t0187100-00
Chr03	irgsp1_rep	CDS	4558935	4558985	.	+	0	Parent=Os03t0187100-00
Chr03	irgsp1_rep	CDS	4559099	4559149	.	+	0	Parent=Os03t0187100-00
Chr03	irgsp1_rep	three_prime_UTR	4559150	4559179	.	+	.	Parent=Os03t0187100-00
Chr03	irgsp1_rep	three_prime_UTR	4559299	4559410	.	+	.	Parent=Os03t0187100-00
Chr03	irgsp1_rep	mRNA	4559624	4559829	.	+	.	ID=Os03t0187200-01;Name=Os03t0187200-01;Locus_id=Os03g0187200;Note=Non-protein coding transcript.;Transcript_evidence=AK060541 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-021-E05;TENOR=Os03t0187200-01
Chr03	irgsp1_rep	exon	4559624	4559829	.	+	.	Parent=Os03t0187200-01
Chr03	irgsp1_rep	mRNA	4561080	4569082	.	+	.	ID=Os03t0187300-01;Name=Os03t0187300-01;Locus_id=Os03g0187300;Oryzabase Gene Symbol Synonym(s)=OsWD40-64;Note=Similar to transducin family protein / WD-40 repeat family protein.;Transcript_evidence=AK106710 (DDBJ%2C Best hit);ORF_evidence=NP_568242.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=002-114-F03;Oryzabase=10745;TENOR=Os03t0187300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	4561080	4561225	.	+	.	Parent=Os03t0187300-01
Chr03	irgsp1_rep	CDS	4561226	4561324	.	+	0	Parent=Os03t0187300-01
Chr03	irgsp1_rep	CDS	4562069	4562137	.	+	0	Parent=Os03t0187300-01
Chr03	irgsp1_rep	CDS	4562313	4562390	.	+	0	Parent=Os03t0187300-01
Chr03	irgsp1_rep	CDS	4562952	4563086	.	+	0	Parent=Os03t0187300-01
Chr03	irgsp1_rep	CDS	4563184	4563291	.	+	0	Parent=Os03t0187300-01
Chr03	irgsp1_rep	CDS	4563610	4563738	.	+	0	Parent=Os03t0187300-01
Chr03	irgsp1_rep	CDS	4564404	4564519	.	+	0	Parent=Os03t0187300-01
Chr03	irgsp1_rep	CDS	4564605	4564896	.	+	1	Parent=Os03t0187300-01
Chr03	irgsp1_rep	three_prime_UTR	4564897	4565592	.	+	.	Parent=Os03t0187300-01
Chr03	irgsp1_rep	three_prime_UTR	4565705	4566118	.	+	.	Parent=Os03t0187300-01
Chr03	irgsp1_rep	three_prime_UTR	4566197	4566307	.	+	.	Parent=Os03t0187300-01
Chr03	irgsp1_rep	three_prime_UTR	4566419	4566530	.	+	.	Parent=Os03t0187300-01
Chr03	irgsp1_rep	three_prime_UTR	4566828	4567156	.	+	.	Parent=Os03t0187300-01
Chr03	irgsp1_rep	three_prime_UTR	4567277	4567367	.	+	.	Parent=Os03t0187300-01
Chr03	irgsp1_rep	three_prime_UTR	4567755	4567850	.	+	.	Parent=Os03t0187300-01
Chr03	irgsp1_rep	three_prime_UTR	4567923	4567993	.	+	.	Parent=Os03t0187300-01
Chr03	irgsp1_rep	three_prime_UTR	4568081	4568193	.	+	.	Parent=Os03t0187300-01
Chr03	irgsp1_rep	three_prime_UTR	4568566	4568673	.	+	.	Parent=Os03t0187300-01
Chr03	irgsp1_rep	three_prime_UTR	4568867	4569082	.	+	.	Parent=Os03t0187300-01
Chr03	irgsp1_rep	mRNA	4569626	4571038	.	-	.	ID=Os03t0187350-01;Name=Os03t0187350-01;Locus_id=Os03g0187350;Note=Conserved hypothetical protein.;Transcript_evidence=AK241156 (DDBJ%2C Best hit);ORF_evidence=NP_001173293.1 (RefSeq);NIAS_FLcDNA=J065114I10;TENOR=Os03t0187350-01;KEGG=Os03t0187350-01
Chr03	irgsp1_rep	five_prime_UTR	4570853	4571038	.	-	.	Parent=Os03t0187350-01
Chr03	irgsp1_rep	five_prime_UTR	4570163	4570231	.	-	.	Parent=Os03t0187350-01
Chr03	irgsp1_rep	five_prime_UTR	4570067	4570087	.	-	.	Parent=Os03t0187350-01
Chr03	irgsp1_rep	CDS	4569761	4570066	.	-	0	Parent=Os03t0187350-01
Chr03	irgsp1_rep	three_prime_UTR	4569626	4569760	.	-	.	Parent=Os03t0187350-01
Chr03	irgsp1_rep	mRNA	4573148	4575550	.	+	.	ID=Os03t0187400-01;Name=Os03t0187400-01;Locus_id=Os03g0187400;Note=Zinc finger%2C FYVE/PHD-type domain containing protein.;Transcript_evidence=AK100103 (DDBJ%2C Best hit);ORF_evidence=Q01JG8 (UniProt);NIAS_FLcDNA=J023004K09;Expression=AK100103;TENOR=Os03t0187400-01;KEGG=Os03t0187400-01
Chr03	irgsp1_rep	five_prime_UTR	4573148	4573454	.	+	.	Parent=Os03t0187400-01
Chr03	irgsp1_rep	CDS	4573455	4573606	.	+	0	Parent=Os03t0187400-01
Chr03	irgsp1_rep	CDS	4574895	4575345	.	+	1	Parent=Os03t0187400-01
Chr03	irgsp1_rep	three_prime_UTR	4575346	4575550	.	+	.	Parent=Os03t0187400-01
Chr03	irgsp1_rep	mRNA	4584427	4586848	.	-	.	ID=Os03t0187500-01;Name=Os03t0187500-01;Locus_id=Os03g0187500;RAP-DB Gene Symbol Synonym(s)=OsAFB6%2C OsAFB5;RAP-DB Gene Name Synonym(s)=Auxin-signaling F-Box 6;Oryzabase Gene Symbol Synonym(s)=Os_F0701%2C OsAFB6%2C AFB6;Oryzabase Gene Name Synonym(s)=Auxin-signaling F-Box 6;Note=Auxin receptor%2C F-Box protein%2C Regulation of key genes involved in flowering pathways and panicle formation-related hormone pathways;Transcript_evidence=AK059536 (truncated),Inferred from literature;ORF_evidence=Q8H7P5;GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box-like domain superfamily (IPR036047),Leucine-rich repeat domain superfamily (IPR032675),COI1%2C F-box (IPR041567),Transport inhibitor response 1 domain (IPR041101),Leucine-rich repeat%2C cysteine-containing subtype (IPR006553);NIAS_FLcDNA=001-029-E02 (truncated);Manual Curation=November 4%2C 2020;Literature_PMID=33135782,30232356;Oryzabase=17506;Expression=AK059536;TENOR=Os03t0187500-01;KEGG=Os03t0187500-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=nucleus (GO:0005634)
Chr03	irgsp1_rep	CDS	4586319	4586848	.	-	0	Parent=Os03t0187500-01
Chr03	irgsp1_rep	CDS	4585668	4586190	.	-	1	Parent=Os03t0187500-01
Chr03	irgsp1_rep	CDS	4584829	4585587	.	-	0	Parent=Os03t0187500-01
Chr03	irgsp1_rep	three_prime_UTR	4584427	4584828	.	-	.	Parent=Os03t0187500-01
Chr03	irgsp1_rep	mRNA	4584681	4585444	.	-	.	ID=Os03t0187500-02;Name=Os03t0187500-02;Locus_id=Os03g0187500;Oryzabase Gene Symbol Synonym(s)=Os_F0701%2C OsAFB6%2C AFB6;Oryzabase Gene Name Synonym(s)=Auxin-signaling F-Box 6;Note=Similar to Leucine Rich Repeat family protein%2C expressed.;Transcript_evidence=AK059002 (DDBJ%2C Best hit);ORF_evidence=Q8H7P5 (UniProt);InterPro=Leucine-rich repeat%2C cysteine-containing subtype (IPR006553);NIAS_FLcDNA=001-020-H01;Oryzabase=17506;Expression=AK059002;TENOR=Os03t0187500-02;KEGG=Os03t0187500-02
Chr03	irgsp1_rep	five_prime_UTR	4585444	4585444	.	-	.	Parent=Os03t0187500-02
Chr03	irgsp1_rep	CDS	4584829	4585443	.	-	0	Parent=Os03t0187500-02
Chr03	irgsp1_rep	three_prime_UTR	4584681	4584828	.	-	.	Parent=Os03t0187500-02
Chr03	irgsp1_rep	mRNA	4584815	4587005	.	+	.	ID=Os03t0187525-00;Name=Os03t0187525-00;Locus_id=Os03g0187525;Note=Hypothetical protein.;Transcript_evidence=tplb0032b19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0187525-00
Chr03	irgsp1_rep	five_prime_UTR	4584815	4585631	.	+	.	Parent=Os03t0187525-00
Chr03	irgsp1_rep	five_prime_UTR	4585710	4586150	.	+	.	Parent=Os03t0187525-00
Chr03	irgsp1_rep	five_prime_UTR	4586290	4586309	.	+	.	Parent=Os03t0187525-00
Chr03	irgsp1_rep	CDS	4586310	4586972	.	+	0	Parent=Os03t0187525-00
Chr03	irgsp1_rep	three_prime_UTR	4586973	4587005	.	+	.	Parent=Os03t0187525-00
Chr03	irgsp1_rep	mRNA	4592219	4594344	.	-	.	ID=Os03t0187550-01;Name=Os03t0187550-01;Locus_id=Os03g0187550;Note=Hypothetical gene.;Transcript_evidence=AK288840 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090074H14;TENOR=Os03t0187550-01;KEGG=Os03t0187550-01
Chr03	irgsp1_rep	five_prime_UTR	4593662	4594344	.	-	.	Parent=Os03t0187550-01
Chr03	irgsp1_rep	CDS	4593446	4593661	.	-	0	Parent=Os03t0187550-01
Chr03	irgsp1_rep	three_prime_UTR	4592219	4593445	.	-	.	Parent=Os03t0187550-01
Chr03	irgsp1_rep	mRNA	4592489	4594797	.	+	.	ID=Os03t0187600-01;Name=Os03t0187600-01;Locus_id=Os03g0187600;RAP-DB Gene Symbol Synonym(s)=OsGRAM;RAP-DB Gene Name Synonym(s)=GRAM domain containing protein;CGSNL Gene Symbol=GRAM;CGSNL Gene Name=GRAM DOMAIN CONTAINING PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsGRAM;Oryzabase Gene Name Synonym(s)=GRAM domain containing protein;Note=GRAM domain containing protein%2C Tolerance to abiotic stresses;Transcript_evidence=AK068057;ORF_evidence=Q8H7P4;InterPro=PH-like domain superfamily (IPR011993),GRAM domain (IPR004182);NIAS_FLcDNA=J013130C18;Manual Curation=July 9%2C 2020;Literature_PMID=31417134;Oryzabase=23398;Expression=AK068057;TENOR=Os03t0187600-01;KEGG=Os03t0187600-01
Chr03	irgsp1_rep	five_prime_UTR	4592489	4592638	.	+	.	Parent=Os03t0187600-01
Chr03	irgsp1_rep	CDS	4592639	4592870	.	+	0	Parent=Os03t0187600-01
Chr03	irgsp1_rep	CDS	4592964	4593065	.	+	2	Parent=Os03t0187600-01
Chr03	irgsp1_rep	CDS	4593850	4594121	.	+	2	Parent=Os03t0187600-01
Chr03	irgsp1_rep	CDS	4594420	4594608	.	+	0	Parent=Os03t0187600-01
Chr03	irgsp1_rep	three_prime_UTR	4594609	4594797	.	+	.	Parent=Os03t0187600-01
Chr03	irgsp1_rep	mRNA	4596108	4598257	.	+	.	ID=Os03t0187700-01;Name=Os03t0187700-01;Locus_id=Os03g0187700;Note=Target SNARE coiled-coil region domain containing protein.;Transcript_evidence=AK242095 (DDBJ%2C Best hit);ORF_evidence=NP_001049212.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Target SNARE coiled-coil domain (IPR000727);NIAS_FLcDNA=J075142H08;TENOR=Os03t0187700-01;KEGG=Os03t0187700-01
Chr03	irgsp1_rep	five_prime_UTR	4596108	4596230	.	+	.	Parent=Os03t0187700-01
Chr03	irgsp1_rep	CDS	4596231	4596256	.	+	0	Parent=Os03t0187700-01
Chr03	irgsp1_rep	CDS	4596610	4596739	.	+	1	Parent=Os03t0187700-01
Chr03	irgsp1_rep	CDS	4596951	4597007	.	+	0	Parent=Os03t0187700-01
Chr03	irgsp1_rep	CDS	4597879	4598040	.	+	0	Parent=Os03t0187700-01
Chr03	irgsp1_rep	three_prime_UTR	4598041	4598257	.	+	.	Parent=Os03t0187700-01
Chr03	irgsp1_rep	mRNA	4598924	4600430	.	-	.	ID=Os03t0187800-01;Name=Os03t0187800-01;Locus_id=Os03g0187800;CGSNL Gene Symbol=PUP1;CGSNL Gene Name=PURINE PERMEASE 1;Oryzabase Gene Symbol Synonym(s)=OsPUP1;Oryzabase Gene Name Synonym(s)=purine permease 1%2C PUP-type cytokinin transporter 1;Note=Protein of unknown function DUF250 domain containing protein.;Transcript_evidence=AK105352 (DDBJ%2C Best hit);ORF_evidence=B4FET6 (UniProt);InterPro=Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=001-119-A09;Oryzabase=15002;Expression=AK105352;TENOR=Os03t0187800-01;KEGG=Os03t0187800-01
Chr03	irgsp1_rep	five_prime_UTR	4600321	4600430	.	-	.	Parent=Os03t0187800-01
Chr03	irgsp1_rep	CDS	4599121	4600320	.	-	0	Parent=Os03t0187800-01
Chr03	irgsp1_rep	three_prime_UTR	4598924	4599120	.	-	.	Parent=Os03t0187800-01
Chr03	irgsp1_rep	mRNA	4606945	4616239	.	+	.	ID=Os03t0188100-01;Name=Os03t0188100-01;Locus_id=Os03g0188100;CGSNL Gene Symbol=MATE1;CGSNL Gene Name=MULTIDRUG AND TOXIC COMPOUND EXTRUSION PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsMATE1;Oryzabase Gene Name Synonym(s)=Multidrug and Toxic compound Extrusion protein 1;Note=Similar to transparent testa 12 protein.;Transcript_evidence=AK242068 (DDBJ%2C Best hit),AK240698 (DDBJ%2C Best hit);ORF_evidence=NP_001147792.1 (RefSeq);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);NIAS_FLcDNA=J075131A06,J043012N12;Oryzabase=15520;TENOR=Os03t0188100-01
Chr03	irgsp1_rep	five_prime_UTR	4606945	4607073	.	+	.	Parent=Os03t0188100-01
Chr03	irgsp1_rep	CDS	4607074	4607367	.	+	0	Parent=Os03t0188100-01
Chr03	irgsp1_rep	CDS	4614169	4614675	.	+	0	Parent=Os03t0188100-01
Chr03	irgsp1_rep	CDS	4614794	4614838	.	+	0	Parent=Os03t0188100-01
Chr03	irgsp1_rep	three_prime_UTR	4614839	4614880	.	+	.	Parent=Os03t0188100-01
Chr03	irgsp1_rep	three_prime_UTR	4614958	4615014	.	+	.	Parent=Os03t0188100-01
Chr03	irgsp1_rep	three_prime_UTR	4615134	4615372	.	+	.	Parent=Os03t0188100-01
Chr03	irgsp1_rep	three_prime_UTR	4615474	4615592	.	+	.	Parent=Os03t0188100-01
Chr03	irgsp1_rep	three_prime_UTR	4615701	4615787	.	+	.	Parent=Os03t0188100-01
Chr03	irgsp1_rep	three_prime_UTR	4615886	4616239	.	+	.	Parent=Os03t0188100-01
Chr03	irgsp1_rep	mRNA	4606945	4616239	.	+	.	ID=Os03t0188100-02;Name=Os03t0188100-02;Locus_id=Os03g0188100;RAP-DB Gene Symbol Synonym(s)=OsMATE1;RAP-DB Gene Name Synonym(s)=Multidrug and Toxic compound Extrusion protein 1;CGSNL Gene Symbol=MATE1;CGSNL Gene Name=MULTIDRUG AND TOXIC COMPOUND EXTRUSION PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsMATE1;Oryzabase Gene Name Synonym(s)=Multidrug and Toxic compound Extrusion protein 1;Note=Multidrug and toxic compound extrusion (MATE) protein family transporter%2C Regulation of plant growth and development%2C Disease resistance;Transcript_evidence=Inferred from literature;ORF_evidence=B9F5L0;GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297),Cellular Component: membrane (GO:0016020);InterPro=Multi antimicrobial extrusion protein (IPR002528);Manual Curation=August 22%2C 2018;Literature_PMID=24492654;Oryzabase=15520;Subcellular location=plasma membrane (GO:0005886)
Chr03	irgsp1_rep	five_prime_UTR	4606945	4607073	.	+	.	Parent=Os03t0188100-02
Chr03	irgsp1_rep	CDS	4607074	4607367	.	+	0	Parent=Os03t0188100-02
Chr03	irgsp1_rep	CDS	4614169	4614675	.	+	0	Parent=Os03t0188100-02
Chr03	irgsp1_rep	CDS	4614762	4614880	.	+	0	Parent=Os03t0188100-02
Chr03	irgsp1_rep	CDS	4614958	4615014	.	+	1	Parent=Os03t0188100-02
Chr03	irgsp1_rep	CDS	4615134	4615372	.	+	1	Parent=Os03t0188100-02
Chr03	irgsp1_rep	CDS	4615474	4615592	.	+	2	Parent=Os03t0188100-02
Chr03	irgsp1_rep	CDS	4615701	4615787	.	+	0	Parent=Os03t0188100-02
Chr03	irgsp1_rep	CDS	4615886	4615933	.	+	0	Parent=Os03t0188100-02
Chr03	irgsp1_rep	three_prime_UTR	4615934	4616239	.	+	.	Parent=Os03t0188100-02
Chr03	irgsp1_rep	mRNA	4616778	4618026	.	-	.	ID=Os03t0188200-01;Name=Os03t0188200-01;Locus_id=Os03g0188200;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK058578 (DDBJ%2C Best hit);ORF_evidence=NP_001149891.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=001-017-F04;Expression=AK058578;TENOR=Os03t0188200-01;KEGG=Os03t0188200-01
Chr03	irgsp1_rep	five_prime_UTR	4617930	4618026	.	-	.	Parent=Os03t0188200-01
Chr03	irgsp1_rep	CDS	4616868	4617929	.	-	0	Parent=Os03t0188200-01
Chr03	irgsp1_rep	three_prime_UTR	4616778	4616867	.	-	.	Parent=Os03t0188200-01
Chr03	irgsp1_rep	mRNA	4628935	4630514	.	+	.	ID=Os03t0188400-01;Name=Os03t0188400-01;Locus_id=Os03g0188400;RAP-DB Gene Symbol Synonym(s)=OsbHLH96;Oryzabase Gene Symbol Synonym(s)=OsbHLH044%2C bHLH044%2C OsbHLH96%2C bHLH96%2C bHLH096;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 044;Note=Basic helix-loop-helix (bHLH) protein%2C Defense to brown planthopper;Transcript_evidence=AK107555;ORF_evidence=Q8H7N8;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Helix-loop-helix DNA-binding domain superfamily (IPR036638),Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);NIAS_FLcDNA=002-130-B03;Manual Curation=June 8%2C 2020;Literature_PMID=30796564;Oryzabase=15335;Expression=AK107555;TENOR=Os03t0188400-01;KEGG=Os03t0188400-01
Chr03	irgsp1_rep	five_prime_UTR	4628935	4629039	.	+	.	Parent=Os03t0188400-01
Chr03	irgsp1_rep	CDS	4629040	4629465	.	+	0	Parent=Os03t0188400-01
Chr03	irgsp1_rep	CDS	4629561	4630019	.	+	0	Parent=Os03t0188400-01
Chr03	irgsp1_rep	CDS	4630193	4630297	.	+	0	Parent=Os03t0188400-01
Chr03	irgsp1_rep	three_prime_UTR	4630298	4630514	.	+	.	Parent=Os03t0188400-01
Chr03	irgsp1_rep	mRNA	4634963	4635591	.	-	.	ID=Os03t0188500-01;Name=Os03t0188500-01;Locus_id=Os03g0188500;CGSNL Gene Symbol=AGP3;CGSNL Gene Name=ARABINOGALACTAN PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsAGP3;Oryzabase Gene Name Synonym(s)=Arabinogalactan protein 3;Note=Glutelin family protein.;Transcript_evidence=AK107983 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-135-E08;Oryzabase=11296;Expression=AK107983;TENOR=Os03t0188500-01;KEGG=Os03t0188500-01
Chr03	irgsp1_rep	five_prime_UTR	4635503	4635591	.	-	.	Parent=Os03t0188500-01
Chr03	irgsp1_rep	CDS	4635128	4635502	.	-	0	Parent=Os03t0188500-01
Chr03	irgsp1_rep	three_prime_UTR	4634963	4635127	.	-	.	Parent=Os03t0188500-01
Chr03	irgsp1_rep	mRNA	4652930	4654781	.	+	.	ID=Os03t0188900-01;Name=Os03t0188900-01;Locus_id=Os03g0188900;CGSNL Gene Symbol=HOX13;CGSNL Gene Name=HOMEOBOX GENE 13;Oryzabase Gene Symbol Synonym(s)=Oshox13%2C OsHox13;Oryzabase Gene Name Synonym(s)=rice homeobox gene 13%2C Homeobox-leucine zipper protein HOX13%2C Homeodomain transcription factor HOX13%2C HD-ZIP protein HOX13;Note=Similar to HAHB-7 (Fragment).;Transcript_evidence=AK105644 (DDBJ%2C Best hit),AK101522 (DDBJ%2C Best hit),AK101601 (DDBJ%2C Best hit);ORF_evidence=Q10QP3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: transcription regulatory region sequence-specific DNA binding (GO:0000976),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Helix-turn-helix motif%2C lambda-like repressor (IPR000047),Homeobox (IPR001356),Leucine zipper%2C homeobox-associated (IPR003106),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Homeobox%2C conserved site (IPR017970);NIAS_FLcDNA=001-200-F05,J033046N04,J033051J21;Oryzabase=8449;TENOR=Os03t0188900-01
Chr03	irgsp1_rep	five_prime_UTR	4652930	4653218	.	+	.	Parent=Os03t0188900-01
Chr03	irgsp1_rep	CDS	4653219	4653261	.	+	0	Parent=Os03t0188900-01
Chr03	irgsp1_rep	CDS	4653463	4653899	.	+	2	Parent=Os03t0188900-01
Chr03	irgsp1_rep	CDS	4653978	4654433	.	+	0	Parent=Os03t0188900-01
Chr03	irgsp1_rep	three_prime_UTR	4654434	4654781	.	+	.	Parent=Os03t0188900-01
Chr03	irgsp1_rep	mRNA	4653461	4654743	.	+	.	ID=Os03t0188900-02;Name=Os03t0188900-02;Locus_id=Os03g0188900;CGSNL Gene Symbol=HOX13;CGSNL Gene Name=HOMEOBOX GENE 13;Oryzabase Gene Symbol Synonym(s)=Oshox13%2C OsHox13;Oryzabase Gene Name Synonym(s)=rice homeobox gene 13%2C Homeobox-leucine zipper protein HOX13%2C Homeodomain transcription factor HOX13%2C HD-ZIP protein HOX13;Note=Similar to cDNA clone:001-200-F05%2C full insert sequence.;Transcript_evidence=AK060119 (DDBJ%2C Best hit);ORF_evidence=B7ERV3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: transcription regulatory region sequence-specific DNA binding (GO:0000976),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Helix-turn-helix motif%2C lambda-like repressor (IPR000047),Homeobox (IPR001356),Leucine zipper%2C homeobox-associated (IPR003106),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Homeobox%2C conserved site (IPR017970);NIAS_FLcDNA=006-308-F01;Oryzabase=8449;Expression=AK060119;TENOR=Os03t0188900-02;KEGG=Os03t0188900-02
Chr03	irgsp1_rep	five_prime_UTR	4653461	4653461	.	+	.	Parent=Os03t0188900-02
Chr03	irgsp1_rep	CDS	4653462	4653899	.	+	0	Parent=Os03t0188900-02
Chr03	irgsp1_rep	CDS	4653978	4654433	.	+	0	Parent=Os03t0188900-02
Chr03	irgsp1_rep	three_prime_UTR	4654434	4654743	.	+	.	Parent=Os03t0188900-02
Chr03	irgsp1_rep	mRNA	4660862	4661923	.	+	.	ID=Os03t0189100-01;Name=Os03t0189100-01;Locus_id=Os03g0189100;Note=Uncharacterised protein family UPF0503 domain containing protein.;Transcript_evidence=AK066877 (DDBJ%2C Best hit);ORF_evidence=A2XDD7 (UniProt);InterPro=Uncharacterised protein family UPF0503 (IPR008004);NIAS_FLcDNA=J013087C18;Expression=AK066877;TENOR=Os03t0189100-01;KEGG=Os03t0189100-01
Chr03	irgsp1_rep	five_prime_UTR	4660862	4661029	.	+	.	Parent=Os03t0189100-01
Chr03	irgsp1_rep	CDS	4661030	4661560	.	+	0	Parent=Os03t0189100-01
Chr03	irgsp1_rep	three_prime_UTR	4661561	4661923	.	+	.	Parent=Os03t0189100-01
Chr03	irgsp1_rep	mRNA	4665311	4666944	.	-	.	ID=Os03t0189300-01;Name=Os03t0189300-01;Locus_id=Os03g0189300;Note=Conserved hypothetical protein.;Transcript_evidence=AK069700 (DDBJ%2C Best hit);ORF_evidence=B8APR1 (UniProt);NIAS_FLcDNA=J023027B20;Expression=AK069700;TENOR=Os03t0189300-01;KEGG=Os03t0189300-01
Chr03	irgsp1_rep	five_prime_UTR	4666918	4666944	.	-	.	Parent=Os03t0189300-01
Chr03	irgsp1_rep	CDS	4665484	4666917	.	-	0	Parent=Os03t0189300-01
Chr03	irgsp1_rep	three_prime_UTR	4665311	4665483	.	-	.	Parent=Os03t0189300-01
Chr03	irgsp1_rep	mRNA	4665457	4666919	.	-	.	ID=Os03t0189300-02;Name=Os03t0189300-02;Locus_id=Os03g0189300;Note=Conserved hypothetical protein.;Transcript_evidence=AK072254 (DDBJ%2C Best hit);ORF_evidence=B8APR1 (UniProt);NIAS_FLcDNA=J023004E23;Expression=AK072254;TENOR=Os03t0189300-02;KEGG=Os03t0189300-02
Chr03	irgsp1_rep	five_prime_UTR	4666918	4666919	.	-	.	Parent=Os03t0189300-02
Chr03	irgsp1_rep	CDS	4665484	4666917	.	-	0	Parent=Os03t0189300-02
Chr03	irgsp1_rep	three_prime_UTR	4665457	4665483	.	-	.	Parent=Os03t0189300-02
Chr03	irgsp1_rep	mRNA	4667276	4679965	.	-	.	ID=Os03t0189400-01;Name=Os03t0189400-01;Locus_id=Os03g0189400;Note=Similar to Alcohol dehydrogenase ADH.;Transcript_evidence=AK067720 (DDBJ%2C Best hit);ORF_evidence=B6TD57 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),Alcohol dehydrogenase%2C zinc-type%2C conserved site (IPR002328),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013121M03;Expression=AK067720;TENOR=Os03t0189400-01;KEGG=Os03t0189400-01 (EC:1.1.1.1%2C EC:1.1.1.284)
Chr03	irgsp1_rep	five_prime_UTR	4679911	4679965	.	-	.	Parent=Os03t0189400-01
Chr03	irgsp1_rep	CDS	4679874	4679910	.	-	0	Parent=Os03t0189400-01
Chr03	irgsp1_rep	CDS	4679584	4679720	.	-	2	Parent=Os03t0189400-01
Chr03	irgsp1_rep	CDS	4678996	4679042	.	-	0	Parent=Os03t0189400-01
Chr03	irgsp1_rep	CDS	4668545	4668870	.	-	1	Parent=Os03t0189400-01
Chr03	irgsp1_rep	CDS	4668368	4668450	.	-	2	Parent=Os03t0189400-01
Chr03	irgsp1_rep	CDS	4668217	4668293	.	-	0	Parent=Os03t0189400-01
Chr03	irgsp1_rep	CDS	4667948	4668107	.	-	1	Parent=Os03t0189400-01
Chr03	irgsp1_rep	CDS	4667693	4667854	.	-	0	Parent=Os03t0189400-01
Chr03	irgsp1_rep	CDS	4667480	4667596	.	-	0	Parent=Os03t0189400-01
Chr03	irgsp1_rep	three_prime_UTR	4667276	4667479	.	-	.	Parent=Os03t0189400-01
Chr03	irgsp1_rep	mRNA	4682354	4685319	.	-	.	ID=Os03t0189600-01;Name=Os03t0189600-01;Locus_id=Os03g0189600;Note=Similar to Alcohol dehydrogenase.;Transcript_evidence=AK066331 (DDBJ%2C Best hit);ORF_evidence=Q10QN8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),Alcohol dehydrogenase%2C zinc-type%2C conserved site (IPR002328),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013062F20;Expression=AK066331;TENOR=Os03t0189600-01;KEGG=Os03t0189600-01 (EC:1.1.1.1%2C EC:1.1.1.284)
Chr03	irgsp1_rep	five_prime_UTR	4685131	4685319	.	-	.	Parent=Os03t0189600-01
Chr03	irgsp1_rep	CDS	4685094	4685130	.	-	0	Parent=Os03t0189600-01
Chr03	irgsp1_rep	CDS	4684845	4684978	.	-	2	Parent=Os03t0189600-01
Chr03	irgsp1_rep	CDS	4684725	4684768	.	-	0	Parent=Os03t0189600-01
Chr03	irgsp1_rep	CDS	4684302	4684627	.	-	1	Parent=Os03t0189600-01
Chr03	irgsp1_rep	CDS	4683689	4683771	.	-	2	Parent=Os03t0189600-01
Chr03	irgsp1_rep	CDS	4683525	4683601	.	-	0	Parent=Os03t0189600-01
Chr03	irgsp1_rep	CDS	4683370	4683433	.	-	1	Parent=Os03t0189600-01
Chr03	irgsp1_rep	CDS	4683179	4683274	.	-	0	Parent=Os03t0189600-01
Chr03	irgsp1_rep	CDS	4682908	4683069	.	-	0	Parent=Os03t0189600-01
Chr03	irgsp1_rep	CDS	4682685	4682801	.	-	0	Parent=Os03t0189600-01
Chr03	irgsp1_rep	three_prime_UTR	4682354	4682684	.	-	.	Parent=Os03t0189600-01
Chr03	irgsp1_rep	mRNA	4682466	4685170	.	-	.	ID=Os03t0189600-02;Name=Os03t0189600-02;Locus_id=Os03g0189600;Note=Similar to Alcohol dehydrogenase.;Transcript_evidence=AK061930 (DDBJ%2C Best hit);ORF_evidence=Q10QN8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),Alcohol dehydrogenase%2C zinc-type%2C conserved site (IPR002328),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-042-C10;Expression=AK061930;TENOR=Os03t0189600-02;KEGG=Os03t0189600-02 (EC:1.1.1.1%2C EC:1.1.1.284)
Chr03	irgsp1_rep	five_prime_UTR	4685131	4685170	.	-	.	Parent=Os03t0189600-02
Chr03	irgsp1_rep	CDS	4685094	4685130	.	-	0	Parent=Os03t0189600-02
Chr03	irgsp1_rep	CDS	4684845	4684978	.	-	2	Parent=Os03t0189600-02
Chr03	irgsp1_rep	CDS	4684725	4684768	.	-	0	Parent=Os03t0189600-02
Chr03	irgsp1_rep	CDS	4684302	4684627	.	-	1	Parent=Os03t0189600-02
Chr03	irgsp1_rep	CDS	4683689	4683771	.	-	2	Parent=Os03t0189600-02
Chr03	irgsp1_rep	CDS	4683525	4683601	.	-	0	Parent=Os03t0189600-02
Chr03	irgsp1_rep	CDS	4683370	4683433	.	-	1	Parent=Os03t0189600-02
Chr03	irgsp1_rep	CDS	4683179	4683274	.	-	0	Parent=Os03t0189600-02
Chr03	irgsp1_rep	CDS	4682908	4683069	.	-	0	Parent=Os03t0189600-02
Chr03	irgsp1_rep	CDS	4682685	4682801	.	-	0	Parent=Os03t0189600-02
Chr03	irgsp1_rep	three_prime_UTR	4682466	4682684	.	-	.	Parent=Os03t0189600-02
Chr03	irgsp1_rep	mRNA	4694814	4695941	.	+	.	ID=Os03t0190000-01;Name=Os03t0190000-01;Locus_id=Os03g0190000;Note=VQ domain containing protein.;Transcript_evidence=AK108273 (DDBJ%2C Best hit);ORF_evidence=NP_565177.1 (RefSeq);InterPro=VQ (IPR008889);NIAS_FLcDNA=002-141-C05;Expression=AK108273;TENOR=Os03t0190000-01;KEGG=Os03t0190000-01
Chr03	irgsp1_rep	five_prime_UTR	4694814	4694879	.	+	.	Parent=Os03t0190000-01
Chr03	irgsp1_rep	CDS	4694880	4695626	.	+	0	Parent=Os03t0190000-01
Chr03	irgsp1_rep	three_prime_UTR	4695627	4695941	.	+	.	Parent=Os03t0190000-01
Chr03	irgsp1_rep	mRNA	4697347	4700133	.	-	.	ID=Os03t0190100-01;Name=Os03t0190100-01;Locus_id=Os03g0190100;Oryzabase Gene Symbol Synonym(s)=OsPPT1%2C PPT1;Oryzabase Gene Name Synonym(s)=prenyltransferase 1;Note=UbiA prenyltransferase family protein.;Transcript_evidence=AK061907 (DDBJ%2C Best hit),AK066332 (DDBJ%2C Best hit);ORF_evidence=B6UA12 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021),Molecular Function: prenyltransferase activity (GO:0004659);InterPro=UbiA prenyltransferase family (IPR000537),1%2C4-dihydroxy-2-naphthoate phytyltransferase (IPR011937);NIAS_FLcDNA=001-041-H11,J013060C07;Oryzabase=19246;Expression=AK061907;TENOR=Os03t0190100-01;KEGG=Os03t0190100-01 (EC:2.5.1.74)
Chr03	irgsp1_rep	five_prime_UTR	4700081	4700133	.	-	.	Parent=Os03t0190100-01
Chr03	irgsp1_rep	CDS	4699829	4700080	.	-	0	Parent=Os03t0190100-01
Chr03	irgsp1_rep	CDS	4699544	4699647	.	-	0	Parent=Os03t0190100-01
Chr03	irgsp1_rep	CDS	4699364	4699435	.	-	1	Parent=Os03t0190100-01
Chr03	irgsp1_rep	CDS	4699110	4699248	.	-	1	Parent=Os03t0190100-01
Chr03	irgsp1_rep	CDS	4698810	4698925	.	-	0	Parent=Os03t0190100-01
Chr03	irgsp1_rep	CDS	4698607	4698706	.	-	1	Parent=Os03t0190100-01
Chr03	irgsp1_rep	CDS	4698479	4698517	.	-	0	Parent=Os03t0190100-01
Chr03	irgsp1_rep	CDS	4698253	4698363	.	-	0	Parent=Os03t0190100-01
Chr03	irgsp1_rep	CDS	4698093	4698158	.	-	0	Parent=Os03t0190100-01
Chr03	irgsp1_rep	CDS	4697888	4697998	.	-	0	Parent=Os03t0190100-01
Chr03	irgsp1_rep	three_prime_UTR	4697347	4697887	.	-	.	Parent=Os03t0190100-01
Chr03	irgsp1_rep	mRNA	4702183	4705151	.	-	.	ID=Os03t0190300-00;Name=Os03t0190300-00;Locus_id=Os03g0190300;Note=Similar to protein binding protein.;Transcript_evidence=AK375450 (DDBJ);ORF_evidence=NP_001147116.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591);TENOR=Os03t0190300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	4705121	4705151	.	-	.	Parent=Os03t0190300-00
Chr03	irgsp1_rep	CDS	4705064	4705120	.	-	0	Parent=Os03t0190300-00
Chr03	irgsp1_rep	CDS	4703819	4704977	.	-	0	Parent=Os03t0190300-00
Chr03	irgsp1_rep	CDS	4703410	4703556	.	-	2	Parent=Os03t0190300-00
Chr03	irgsp1_rep	CDS	4702183	4702694	.	-	2	Parent=Os03t0190300-00
Chr03	irgsp1_rep	mRNA	4701663	4701727	.	+	.	ID=Os03t0190301-00;Name=Os03t0190301-00;Locus_id=Os03g0190301;Note=Non-protein coding transcript.;Transcript_evidence=EU943375 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0190301-00
Chr03	irgsp1_rep	exon	4701663	4701727	.	+	.	Parent=Os03t0190301-00
Chr03	irgsp1_rep	mRNA	4702039	4705495	.	+	.	ID=Os03t0190400-01;Name=Os03t0190400-01;Locus_id=Os03g0190400;Note=Hypothetical gene.;Transcript_evidence=AK318536 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065194A15;TENOR=Os03t0190400-01;KEGG=Os03t0190400-01
Chr03	irgsp1_rep	five_prime_UTR	4702039	4702694	.	+	.	Parent=Os03t0190400-01
Chr03	irgsp1_rep	five_prime_UTR	4703410	4703556	.	+	.	Parent=Os03t0190400-01
Chr03	irgsp1_rep	five_prime_UTR	4703819	4703820	.	+	.	Parent=Os03t0190400-01
Chr03	irgsp1_rep	CDS	4703821	4704531	.	+	0	Parent=Os03t0190400-01
Chr03	irgsp1_rep	three_prime_UTR	4704532	4704977	.	+	.	Parent=Os03t0190400-01
Chr03	irgsp1_rep	three_prime_UTR	4705064	4705495	.	+	.	Parent=Os03t0190400-01
Chr03	irgsp1_rep	mRNA	4706388	4707829	.	-	.	ID=Os03t0190500-01;Name=Os03t0190500-01;Locus_id=Os03g0190500;Note=Hypothetical gene.;Transcript_evidence=AK110854 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-172-C09;Expression=AK110854;TENOR=Os03t0190500-01;KEGG=Os03t0190500-01
Chr03	irgsp1_rep	five_prime_UTR	4707042	4707829	.	-	.	Parent=Os03t0190500-01
Chr03	irgsp1_rep	CDS	4706805	4707041	.	-	0	Parent=Os03t0190500-01
Chr03	irgsp1_rep	three_prime_UTR	4706388	4706804	.	-	.	Parent=Os03t0190500-01
Chr03	irgsp1_rep	mRNA	4715169	4719205	.	-	.	ID=Os03t0190800-01;Name=Os03t0190800-01;Locus_id=Os03g0190800;CGSNL Gene Symbol=UBP2-2;CGSNL Gene Name=UBIQUITIN-SPECIFIC PROCESSING PROTEASE 2-2;Oryzabase Gene Symbol Synonym(s)=OsUBP2-2%2C OsUBP4%2C UBP4;Oryzabase Gene Name Synonym(s)=ubiquitin-specific processing protease 2-2%2C Ubiquitin-specific protease 4;Note=Similar to Ubiquitin carboxyl-terminal hydrolase 3 (EC 3.1.2.15) (Ubiquitin- specific processing protease 3) (AtUBP3).;Transcript_evidence=AK069100 (DDBJ%2C Best hit);ORF_evidence=A2XDE6 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Molecular Function: ubiquitin thiolesterase activity (GO:0004221);InterPro=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (IPR001394),Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2%2C conserved site (IPR018200);NIAS_FLcDNA=J023004H19;Oryzabase=22873;Expression=AK069100;TENOR=Os03t0190800-01;KEGG=Os03t0190800-01 (EC:3.1.2.15)
Chr03	irgsp1_rep	five_prime_UTR	4719028	4719205	.	-	.	Parent=Os03t0190800-01
Chr03	irgsp1_rep	CDS	4718911	4719027	.	-	0	Parent=Os03t0190800-01
Chr03	irgsp1_rep	CDS	4718241	4718357	.	-	0	Parent=Os03t0190800-01
Chr03	irgsp1_rep	CDS	4717500	4717598	.	-	0	Parent=Os03t0190800-01
Chr03	irgsp1_rep	CDS	4716431	4716616	.	-	0	Parent=Os03t0190800-01
Chr03	irgsp1_rep	CDS	4716134	4716315	.	-	0	Parent=Os03t0190800-01
Chr03	irgsp1_rep	CDS	4715486	4715885	.	-	1	Parent=Os03t0190800-01
Chr03	irgsp1_rep	three_prime_UTR	4715169	4715485	.	-	.	Parent=Os03t0190800-01
Chr03	irgsp1_rep	mRNA	4720699	4724099	.	-	.	ID=Os03t0190900-01;Name=Os03t0190900-01;Locus_id=Os03g0190900;Note=Similar to F12K21.3.;Transcript_evidence=AK288138 (DDBJ%2C Best hit);ORF_evidence=Q9LNM5 (UniProt);NIAS_FLcDNA=J080306J08;TENOR=Os03t0190900-01;KEGG=Os03t0190900-01
Chr03	irgsp1_rep	five_prime_UTR	4724008	4724099	.	-	.	Parent=Os03t0190900-01
Chr03	irgsp1_rep	CDS	4723751	4724007	.	-	0	Parent=Os03t0190900-01
Chr03	irgsp1_rep	CDS	4723523	4723663	.	-	1	Parent=Os03t0190900-01
Chr03	irgsp1_rep	CDS	4722877	4723104	.	-	1	Parent=Os03t0190900-01
Chr03	irgsp1_rep	CDS	4722149	4722356	.	-	1	Parent=Os03t0190900-01
Chr03	irgsp1_rep	CDS	4721795	4721931	.	-	0	Parent=Os03t0190900-01
Chr03	irgsp1_rep	CDS	4721493	4721573	.	-	1	Parent=Os03t0190900-01
Chr03	irgsp1_rep	CDS	4721340	4721406	.	-	1	Parent=Os03t0190900-01
Chr03	irgsp1_rep	CDS	4720939	4721265	.	-	0	Parent=Os03t0190900-01
Chr03	irgsp1_rep	three_prime_UTR	4720699	4720938	.	-	.	Parent=Os03t0190900-01
Chr03	irgsp1_rep	mRNA	4726165	4734003	.	-	.	ID=Os03t0191000-01;Name=Os03t0191000-01;Locus_id=Os03g0191000;Oryzabase Gene Name Synonym(s)=CaM-binding transcription factor homolog%2C OsCBT homolog%2C CBT homolog;Note=Similar to CG-1 protein (Fragment).;Transcript_evidence=AK066651 (DDBJ%2C Best hit);ORF_evidence=Q10QM9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein binding (GO:0005515),Molecular Function: calmodulin binding (GO:0005516);InterPro=IQ motif%2C EF-hand binding site (IPR000048),Ankyrin repeat (IPR002110),Cell surface receptor IPT/TIG (IPR002909),CG-1 (IPR005559),Immunoglobulin-like fold (IPR013783),Immunoglobulin E-set (IPR014756),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J013074G10;Oryzabase=19600;Expression=AK066651;TENOR=Os03t0191000-01;KEGG=Os03t0191000-01
Chr03	irgsp1_rep	five_prime_UTR	4733791	4734003	.	-	.	Parent=Os03t0191000-01
Chr03	irgsp1_rep	CDS	4733751	4733790	.	-	0	Parent=Os03t0191000-01
Chr03	irgsp1_rep	CDS	4733029	4733148	.	-	2	Parent=Os03t0191000-01
Chr03	irgsp1_rep	CDS	4732399	4732514	.	-	2	Parent=Os03t0191000-01
Chr03	irgsp1_rep	CDS	4732177	4732265	.	-	0	Parent=Os03t0191000-01
Chr03	irgsp1_rep	CDS	4731961	4732003	.	-	1	Parent=Os03t0191000-01
Chr03	irgsp1_rep	CDS	4731069	4731219	.	-	0	Parent=Os03t0191000-01
Chr03	irgsp1_rep	CDS	4730833	4730956	.	-	2	Parent=Os03t0191000-01
Chr03	irgsp1_rep	CDS	4730412	4730739	.	-	1	Parent=Os03t0191000-01
Chr03	irgsp1_rep	CDS	4728831	4729193	.	-	0	Parent=Os03t0191000-01
Chr03	irgsp1_rep	CDS	4727993	4728675	.	-	0	Parent=Os03t0191000-01
Chr03	irgsp1_rep	CDS	4727337	4727913	.	-	1	Parent=Os03t0191000-01
Chr03	irgsp1_rep	CDS	4726669	4727013	.	-	0	Parent=Os03t0191000-01
Chr03	irgsp1_rep	CDS	4726458	4726568	.	-	0	Parent=Os03t0191000-01
Chr03	irgsp1_rep	three_prime_UTR	4726165	4726457	.	-	.	Parent=Os03t0191000-01
Chr03	irgsp1_rep	mRNA	4733027	4733150	.	+	.	ID=Os03t0191050-00;Name=Os03t0191050-00;Locus_id=Os03g0191050;Note=Non-protein coding transcript.;Transcript_evidence=BT087030 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0191050-00
Chr03	irgsp1_rep	exon	4733027	4733150	.	+	.	Parent=Os03t0191050-00
Chr03	irgsp1_rep	mRNA	4737753	4741311	.	-	.	ID=Os03t0191100-01;Name=Os03t0191100-01;Locus_id=Os03g0191100;Note=Mitochondrial carrier protein domain containing protein.;Transcript_evidence=AK070661 (DDBJ%2C Best hit);ORF_evidence=NP_201302.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial inner membrane (GO:0005743),Molecular Function: binding (GO:0005488);InterPro=Mitochondrial carrier protein (IPR002067),Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J023056F17;TENOR=Os03t0191100-01
Chr03	irgsp1_rep	five_prime_UTR	4740959	4741311	.	-	.	Parent=Os03t0191100-01
Chr03	irgsp1_rep	CDS	4740534	4740958	.	-	0	Parent=Os03t0191100-01
Chr03	irgsp1_rep	CDS	4739222	4739525	.	-	1	Parent=Os03t0191100-01
Chr03	irgsp1_rep	CDS	4738658	4739125	.	-	0	Parent=Os03t0191100-01
Chr03	irgsp1_rep	CDS	4738167	4738235	.	-	0	Parent=Os03t0191100-01
Chr03	irgsp1_rep	three_prime_UTR	4737753	4738166	.	-	.	Parent=Os03t0191100-01
Chr03	irgsp1_rep	mRNA	4737788	4741030	.	-	.	ID=Os03t0191100-02;Name=Os03t0191100-02;Locus_id=Os03g0191100;Note=Mitochondrial carrier protein domain containing protein.;Transcript_evidence=AK066434 (DDBJ%2C Best hit);ORF_evidence=NP_201302.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial inner membrane (GO:0005743),Molecular Function: binding (GO:0005488);InterPro=Mitochondrial carrier protein (IPR002067),Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J013064M16;Expression=AK066434;TENOR=Os03t0191100-02;KEGG=Os03t0191100-02
Chr03	irgsp1_rep	five_prime_UTR	4740959	4741030	.	-	.	Parent=Os03t0191100-02
Chr03	irgsp1_rep	CDS	4740534	4740958	.	-	0	Parent=Os03t0191100-02
Chr03	irgsp1_rep	CDS	4739222	4739525	.	-	1	Parent=Os03t0191100-02
Chr03	irgsp1_rep	CDS	4738658	4739125	.	-	0	Parent=Os03t0191100-02
Chr03	irgsp1_rep	CDS	4738167	4738235	.	-	0	Parent=Os03t0191100-02
Chr03	irgsp1_rep	three_prime_UTR	4737788	4738166	.	-	.	Parent=Os03t0191100-02
Chr03	irgsp1_rep	mRNA	4737765	4741208	.	-	.	ID=Os03t0191100-03;Name=Os03t0191100-03;Locus_id=Os03g0191100;Note=Mitochondrial carrier protein domain containing protein.;Transcript_evidence=AK103991 (DDBJ%2C Best hit);ORF_evidence=NP_201302.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial inner membrane (GO:0005743),Molecular Function: binding (GO:0005488);InterPro=Mitochondrial carrier protein (IPR002067),Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=001-018-C07;TENOR=Os03t0191100-03
Chr03	irgsp1_rep	five_prime_UTR	4740959	4741208	.	-	.	Parent=Os03t0191100-03
Chr03	irgsp1_rep	CDS	4740534	4740958	.	-	0	Parent=Os03t0191100-03
Chr03	irgsp1_rep	CDS	4739222	4739525	.	-	1	Parent=Os03t0191100-03
Chr03	irgsp1_rep	CDS	4738658	4739125	.	-	0	Parent=Os03t0191100-03
Chr03	irgsp1_rep	CDS	4738167	4738235	.	-	0	Parent=Os03t0191100-03
Chr03	irgsp1_rep	three_prime_UTR	4737765	4738166	.	-	.	Parent=Os03t0191100-03
Chr03	irgsp1_rep	mRNA	4748704	4750253	.	-	.	ID=Os03t0191200-01;Name=Os03t0191200-01;Locus_id=Os03g0191200;Note=WW/Rsp5/WWP domain containing protein.;Transcript_evidence=AK070228 (DDBJ%2C Best hit);ORF_evidence=A2XDF1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WW/Rsp5/WWP (IPR001202);NIAS_FLcDNA=J023042L16;Expression=AK070228;TENOR=Os03t0191200-01;KEGG=Os03t0191200-01
Chr03	irgsp1_rep	five_prime_UTR	4750147	4750253	.	-	.	Parent=Os03t0191200-01
Chr03	irgsp1_rep	CDS	4749919	4750146	.	-	0	Parent=Os03t0191200-01
Chr03	irgsp1_rep	CDS	4749250	4749756	.	-	0	Parent=Os03t0191200-01
Chr03	irgsp1_rep	three_prime_UTR	4748704	4749249	.	-	.	Parent=Os03t0191200-01
Chr03	irgsp1_rep	mRNA	4763790	4766335	.	+	.	ID=Os03t0191400-01;Name=Os03t0191400-01;Locus_id=Os03g0191400;RAP-DB Gene Symbol Synonym(s)=OsRab6B2%2C OsRab6a;RAP-DB Gene Name Synonym(s)=small GTP-binding protein OsRab6B2;Oryzabase Gene Symbol Synonym(s)=OsRab6B2%2C Rab6B2%2C OsRab6a%2C Rab6a;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab6B2;Note=Small GTPase%2C Regulation of iron homeostasis;Transcript_evidence=CT836572 (Guang Lu Ai 4%2C indica);ORF_evidence=Q10QM5;GO=Biological Process: small GTPase mediated signal transduction (GO:0007264),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),P-loop containing nucleoside triphosphate hydrolase (IPR027417),Small GTP-binding protein domain (IPR005225);Manual Curation=June 21%2C 2016;Literature_PMID=27257291;Oryzabase=11085;TENOR=Os03t0191400-00
Chr03	irgsp1_rep	five_prime_UTR	4763790	4764000	.	+	.	Parent=Os03t0191400-01
Chr03	irgsp1_rep	CDS	4764001	4764120	.	+	0	Parent=Os03t0191400-01
Chr03	irgsp1_rep	CDS	4764261	4764331	.	+	0	Parent=Os03t0191400-01
Chr03	irgsp1_rep	CDS	4764723	4764815	.	+	1	Parent=Os03t0191400-01
Chr03	irgsp1_rep	CDS	4765064	4765171	.	+	1	Parent=Os03t0191400-01
Chr03	irgsp1_rep	CDS	4765820	4765910	.	+	1	Parent=Os03t0191400-01
Chr03	irgsp1_rep	CDS	4766018	4766182	.	+	0	Parent=Os03t0191400-01
Chr03	irgsp1_rep	three_prime_UTR	4766183	4766335	.	+	.	Parent=Os03t0191400-01
Chr03	irgsp1_rep	mRNA	4766424	4766491	.	-	.	ID=Os03t0191550-00;Name=Os03t0191550-00;Locus_id=Os03g0191550;Note=Non-protein coding transcript.;Transcript_evidence=X06284 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0191550-00
Chr03	irgsp1_rep	exon	4766424	4766491	.	-	.	Parent=Os03t0191550-00
Chr03	irgsp1_rep	mRNA	4768568	4773074	.	-	.	ID=Os03t0191700-01;Name=Os03t0191700-01;Locus_id=Os03g0191700;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK106885 (DDBJ%2C Best hit);ORF_evidence=B8APS4 (UniProt);GO=Molecular Function: RNA binding (GO:0003723),Molecular Function: binding (GO:0005488);InterPro=Pumilio RNA-binding repeat (IPR001313),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=002-118-F08;Expression=AK106885;TENOR=Os03t0191700-01;KEGG=Os03t0191700-01
Chr03	irgsp1_rep	five_prime_UTR	4772830	4773074	.	-	.	Parent=Os03t0191700-01
Chr03	irgsp1_rep	CDS	4771394	4772829	.	-	0	Parent=Os03t0191700-01
Chr03	irgsp1_rep	CDS	4771041	4771203	.	-	1	Parent=Os03t0191700-01
Chr03	irgsp1_rep	CDS	4770266	4770429	.	-	0	Parent=Os03t0191700-01
Chr03	irgsp1_rep	CDS	4769146	4769404	.	-	1	Parent=Os03t0191700-01
Chr03	irgsp1_rep	CDS	4768970	4769074	.	-	0	Parent=Os03t0191700-01
Chr03	irgsp1_rep	three_prime_UTR	4768568	4768969	.	-	.	Parent=Os03t0191700-01
Chr03	irgsp1_rep	mRNA	4775506	4776380	.	+	.	ID=Os03t0191800-00;Name=Os03t0191800-00;Locus_id=Os03g0191800;Oryzabase Gene Symbol Synonym(s)=OsSTA93;Note=Conserved hypothetical protein.;Transcript_evidence=BT066638 (DDBJ);ORF_evidence=Q10QM2 (UniProt);Oryzabase=19389;TENOR=Os03t0191800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	4775506	4775564	.	+	.	Parent=Os03t0191800-00
Chr03	irgsp1_rep	CDS	4775565	4776380	.	+	0	Parent=Os03t0191800-00
Chr03	irgsp1_rep	mRNA	4780247	4781570	.	+	.	ID=Os03t0191850-01;Name=Os03t0191850-01;Locus_id=Os03g0191850;Note=Hypothetical gene.;Transcript_evidence=AK287694 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065128M14;TENOR=Os03t0191850-01;KEGG=Os03t0191850-01
Chr03	irgsp1_rep	five_prime_UTR	4780247	4780885	.	+	.	Parent=Os03t0191850-01
Chr03	irgsp1_rep	CDS	4780886	4781293	.	+	0	Parent=Os03t0191850-01
Chr03	irgsp1_rep	three_prime_UTR	4781294	4781570	.	+	.	Parent=Os03t0191850-01
Chr03	irgsp1_rep	mRNA	4780248	4781570	.	-	.	ID=Os03t0191900-01;Name=Os03t0191900-01;Locus_id=Os03g0191900;CGSNL Gene Symbol=ERF47;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 47;Oryzabase Gene Symbol Synonym(s)=OsERF#047%2C OsERF047%2C OsERF47%2C AP2/EREBP#121%2C AP2/EREBP121;Oryzabase Gene Name Synonym(s)=ethylene response factor 47%2C APETALA2/ethylene-responsive element binding protein 121;Note=Pathogenesis-related transcriptional factor and ERF domain containing protein.;Transcript_evidence=AK241243 (DDBJ%2C Best hit);ORF_evidence=A0MAU3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J065128M14;Oryzabase=10564;TENOR=Os03t0191900-01;KEGG=Os03t0191900-01
Chr03	irgsp1_rep	five_prime_UTR	4781461	4781570	.	-	.	Parent=Os03t0191900-01
Chr03	irgsp1_rep	CDS	4780567	4781460	.	-	0	Parent=Os03t0191900-01
Chr03	irgsp1_rep	three_prime_UTR	4780248	4780566	.	-	.	Parent=Os03t0191900-01
Chr03	irgsp1_rep	mRNA	4786226	4789319	.	-	.	ID=Os03t0192000-01;Name=Os03t0192000-01;Locus_id=Os03g0192000;Note=Polymerase and histidinol phosphatase-like domain containing protein.;Transcript_evidence=AK066502 (DDBJ%2C Best hit);ORF_evidence=NP_001148541.1 (RefSeq);GO=Biological Process: DNA replication (GO:0006260),Molecular Function: DNA binding (GO:0003677),Molecular Function: catalytic activity (GO:0003824),Molecular Function: DNA-directed DNA polymerase activity (GO:0003887);InterPro=Polymerase/histidinol phosphatase%2C N-terminal (IPR003141),PHP%2C C-terminal (IPR004013),Polymerase/histidinol phosphatase-like (IPR016195);NIAS_FLcDNA=J013074E12;Expression=AK066502;TENOR=Os03t0192000-01;KEGG=Os03t0192000-01
Chr03	irgsp1_rep	five_prime_UTR	4789250	4789319	.	-	.	Parent=Os03t0192000-01
Chr03	irgsp1_rep	CDS	4788956	4789249	.	-	0	Parent=Os03t0192000-01
Chr03	irgsp1_rep	CDS	4787971	4788095	.	-	0	Parent=Os03t0192000-01
Chr03	irgsp1_rep	CDS	4787061	4787375	.	-	1	Parent=Os03t0192000-01
Chr03	irgsp1_rep	CDS	4786795	4786964	.	-	1	Parent=Os03t0192000-01
Chr03	irgsp1_rep	CDS	4786285	4786670	.	-	2	Parent=Os03t0192000-01
Chr03	irgsp1_rep	three_prime_UTR	4786226	4786284	.	-	.	Parent=Os03t0192000-01
Chr03	irgsp1_rep	mRNA	4789625	4793058	.	+	.	ID=Os03t0192100-01;Name=Os03t0192100-01;Locus_id=Os03g0192100;CGSNL Gene Symbol=SCP11;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 11;Oryzabase Gene Symbol Synonym(s)=OsSCP11;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 11;Note=Similar to Serine carboxypeptidase family protein%2C expressed.;Transcript_evidence=AK105523 (DDBJ%2C Best hit);ORF_evidence=Q10QL8 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=001-127-F12;Oryzabase=19194;TENOR=Os03t0192100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	4789625	4789670	.	+	.	Parent=Os03t0192100-01
Chr03	irgsp1_rep	five_prime_UTR	4789780	4790034	.	+	.	Parent=Os03t0192100-01
Chr03	irgsp1_rep	five_prime_UTR	4790144	4790160	.	+	.	Parent=Os03t0192100-01
Chr03	irgsp1_rep	CDS	4790161	4790251	.	+	0	Parent=Os03t0192100-01
Chr03	irgsp1_rep	CDS	4790957	4791237	.	+	2	Parent=Os03t0192100-01
Chr03	irgsp1_rep	CDS	4791328	4791582	.	+	0	Parent=Os03t0192100-01
Chr03	irgsp1_rep	CDS	4791664	4791776	.	+	0	Parent=Os03t0192100-01
Chr03	irgsp1_rep	CDS	4791853	4791948	.	+	1	Parent=Os03t0192100-01
Chr03	irgsp1_rep	CDS	4792057	4792330	.	+	1	Parent=Os03t0192100-01
Chr03	irgsp1_rep	three_prime_UTR	4792331	4793058	.	+	.	Parent=Os03t0192100-01
Chr03	irgsp1_rep	mRNA	4789725	4792547	.	+	.	ID=Os03t0192100-02;Name=Os03t0192100-02;Locus_id=Os03g0192100;CGSNL Gene Symbol=SCP11;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 11;Oryzabase Gene Symbol Synonym(s)=OsSCP11;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 11;Note=Similar to Serine carboxypeptidase family protein%2C expressed.;Transcript_evidence=AK064747 (DDBJ%2C Best hit);ORF_evidence=Q10QL8 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=002-120-E08;Oryzabase=19194;Expression=AK064747;TENOR=Os03t0192100-02;KEGG=Os03t0192100-02
Chr03	irgsp1_rep	five_prime_UTR	4789725	4789763	.	+	.	Parent=Os03t0192100-02
Chr03	irgsp1_rep	CDS	4789764	4790034	.	+	0	Parent=Os03t0192100-02
Chr03	irgsp1_rep	CDS	4790144	4790251	.	+	2	Parent=Os03t0192100-02
Chr03	irgsp1_rep	CDS	4790957	4791237	.	+	2	Parent=Os03t0192100-02
Chr03	irgsp1_rep	CDS	4791328	4791582	.	+	0	Parent=Os03t0192100-02
Chr03	irgsp1_rep	CDS	4791664	4791776	.	+	0	Parent=Os03t0192100-02
Chr03	irgsp1_rep	CDS	4791853	4791948	.	+	1	Parent=Os03t0192100-02
Chr03	irgsp1_rep	CDS	4792057	4792330	.	+	1	Parent=Os03t0192100-02
Chr03	irgsp1_rep	three_prime_UTR	4792331	4792547	.	+	.	Parent=Os03t0192100-02
Chr03	irgsp1_rep	mRNA	4793070	4798661	.	-	.	ID=Os03t0192300-00;Name=Os03t0192300-00;Locus_id=Os03g0192300;Oryzabase Gene Symbol Synonym(s)=OsDSR4;Oryzabase Gene Name Synonym(s)=DUF966-stress repressive gene 4;Note=Hypothetical conserved gene.;Transcript_evidence=EU970802 (DDBJ);ORF_evidence=Q10QL7 (UniProt);InterPro=Protein of unknown function DUF966 (IPR010369);Oryzabase=15441;TENOR=Os03t0192300-00;KEGG=Os03t0192300-00
Chr03	irgsp1_rep	five_prime_UTR	4798616	4798661	.	-	.	Parent=Os03t0192300-00
Chr03	irgsp1_rep	CDS	4798402	4798615	.	-	0	Parent=Os03t0192300-00
Chr03	irgsp1_rep	CDS	4798195	4798264	.	-	2	Parent=Os03t0192300-00
Chr03	irgsp1_rep	CDS	4797951	4798066	.	-	1	Parent=Os03t0192300-00
Chr03	irgsp1_rep	CDS	4796482	4797115	.	-	2	Parent=Os03t0192300-00
Chr03	irgsp1_rep	CDS	4793070	4793184	.	-	1	Parent=Os03t0192300-00
Chr03	irgsp1_rep	mRNA	4808253	4810821	.	-	.	ID=Os03t0192400-01;Name=Os03t0192400-01;Locus_id=Os03g0192400;Note=GRIM-19 family protein.;Transcript_evidence=AK070573 (DDBJ%2C Best hit);ORF_evidence=NP_001151782.1 (RefSeq);InterPro=GRIM-19 (IPR009346);NIAS_FLcDNA=J023056B01;Expression=AK070573;TENOR=Os03t0192400-01;KEGG=Os03t0192400-01
Chr03	irgsp1_rep	five_prime_UTR	4810678	4810821	.	-	.	Parent=Os03t0192400-01
Chr03	irgsp1_rep	CDS	4810463	4810677	.	-	0	Parent=Os03t0192400-01
Chr03	irgsp1_rep	CDS	4808841	4808912	.	-	1	Parent=Os03t0192400-01
Chr03	irgsp1_rep	CDS	4808609	4808750	.	-	1	Parent=Os03t0192400-01
Chr03	irgsp1_rep	three_prime_UTR	4808253	4808608	.	-	.	Parent=Os03t0192400-01
Chr03	irgsp1_rep	mRNA	4815464	4820358	.	+	.	ID=Os03t0192500-01;Name=Os03t0192500-01;Locus_id=Os03g0192500;RAP-DB Gene Symbol Synonym(s)=PP45%2C OsPP45%2C BIPP2C1;RAP-DB Gene Name Synonym(s)=Protein Phosphatase 2C 45%2C Benzothiadiazole-Induced Protein Phosphatase 2C1;CGSNL Gene Symbol=BIPP2C1;CGSNL Gene Name=BTH-INDUCED PROTEIN PHOSPHATASE 2C 1;Oryzabase Gene Symbol Synonym(s)=OsBIPP2C1%2C OsPP45%2C PP45;Oryzabase Gene Name Synonym(s)=Protein phosphatase 45%2C BTH-induced protein phosphatase 2C 1;Note=Type 2C protein phosphatase%2C Negative regulation of ABA signaling%2C Response to biotic and abiotic stresses;Transcript_evidence=AK068957;ORF_evidence=Q10QL5;GO=Molecular Function: catalytic activity (GO:0003824);InterPro=PPM-type phosphatase domain superfamily (IPR036457),PPM-type phosphatase domain (IPR001932);NIAS_FLcDNA=J023003M17;Manual Curation=April 28%2C 2020;Literature_PMID=30538152;Oryzabase=13450;Expression=AK068957;TENOR=Os03t0192500-01;KEGG=Os03t0192500-01;Subcellular location=nucleus (GO:0005634), cytosol (GO:0005829), plasma membrane (GO:0005886)
Chr03	irgsp1_rep	five_prime_UTR	4815464	4815728	.	+	.	Parent=Os03t0192500-01
Chr03	irgsp1_rep	CDS	4815729	4815837	.	+	0	Parent=Os03t0192500-01
Chr03	irgsp1_rep	CDS	4815929	4816698	.	+	2	Parent=Os03t0192500-01
Chr03	irgsp1_rep	CDS	4817201	4817262	.	+	0	Parent=Os03t0192500-01
Chr03	irgsp1_rep	CDS	4817480	4817549	.	+	1	Parent=Os03t0192500-01
Chr03	irgsp1_rep	CDS	4818184	4818271	.	+	0	Parent=Os03t0192500-01
Chr03	irgsp1_rep	CDS	4819271	4819440	.	+	2	Parent=Os03t0192500-01
Chr03	irgsp1_rep	CDS	4819529	4819672	.	+	0	Parent=Os03t0192500-01
Chr03	irgsp1_rep	CDS	4819774	4819902	.	+	0	Parent=Os03t0192500-01
Chr03	irgsp1_rep	CDS	4820010	4820177	.	+	0	Parent=Os03t0192500-01
Chr03	irgsp1_rep	three_prime_UTR	4820178	4820358	.	+	.	Parent=Os03t0192500-01
Chr03	irgsp1_rep	mRNA	4820592	4821406	.	+	.	ID=Os03t0192550-01;Name=Os03t0192550-01;Locus_id=Os03g0192550;Note=Hypothetical gene.;Transcript_evidence=AK111026 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-174-H04;Expression=AK111026;TENOR=Os03t0192550-01;KEGG=Os03t0192550-01
Chr03	irgsp1_rep	five_prime_UTR	4820592	4820953	.	+	.	Parent=Os03t0192550-01
Chr03	irgsp1_rep	CDS	4820954	4821169	.	+	0	Parent=Os03t0192550-01
Chr03	irgsp1_rep	three_prime_UTR	4821170	4821406	.	+	.	Parent=Os03t0192550-01
Chr03	irgsp1_rep	mRNA	4820699	4822659	.	-	.	ID=Os03t0192600-02;Name=Os03t0192600-02;Locus_id=Os03g0192600;Oryzabase Gene Symbol Synonym(s)=OsLTPG3%2C OsLTPg3;Oryzabase Gene Name Synonym(s)=GPI-anchored non-specific lipid transfer protein 3%2C type G nsLTP 3%2C type G non-specific lipid transfer protein 3;Note=Plant lipid transfer protein/Par allergen family protein.;Transcript_evidence=AK105970 (DDBJ%2C Best hit),AK061461 (DDBJ%2C Best hit);ORF_evidence=Q10QK9 (UniProt);NIAS_FLcDNA=001-205-E12,006-308-B10;Oryzabase=13490;Expression=AK105970;TENOR=Os03t0192600-02;KEGG=Os03t0192600-02
Chr03	irgsp1_rep	five_prime_UTR	4822382	4822659	.	-	.	Parent=Os03t0192600-02
Chr03	irgsp1_rep	CDS	4821985	4822381	.	-	0	Parent=Os03t0192600-02
Chr03	irgsp1_rep	CDS	4821822	4821854	.	-	2	Parent=Os03t0192600-02
Chr03	irgsp1_rep	CDS	4820859	4821064	.	-	2	Parent=Os03t0192600-02
Chr03	irgsp1_rep	three_prime_UTR	4820699	4820858	.	-	.	Parent=Os03t0192600-02
Chr03	irgsp1_rep	mRNA	4821888	4822280	.	+	.	ID=Os03t0192633-00;Name=Os03t0192633-00;Locus_id=Os03g0192633;Note=Conserved hypothetical protein.;Transcript_evidence=EU948204 (DDBJ);ORF_evidence=C0PJW3 (UniProt);TENOR=Os03t0192633-00
Chr03	irgsp1_rep	CDS	4821888	4822187	.	+	0	Parent=Os03t0192633-00
Chr03	irgsp1_rep	three_prime_UTR	4822188	4822280	.	+	.	Parent=Os03t0192633-00
Chr03	irgsp1_rep	mRNA	4825697	4829533	.	-	.	ID=Os03t0192700-01;Name=Os03t0192700-01;Locus_id=Os03g0192700;RAP-DB Gene Symbol Synonym(s)=INO1%2C RINO1;RAP-DB Gene Name Synonym(s)=myo-inositol 3-phosphate synthase 1%2C 1D-myo-inositol 3-phosphate synthase 1;CGSNL Gene Symbol=INO1;CGSNL Gene Name=INOSITOL 1-PHOSPHATE SYNTHASE-1;Oryzabase Gene Symbol Synonym(s)=OsINO1%2C MIPS%2C IPS%2C RINO1%2C OsINO1-1%2C OsRINO1%2C OsMIPS1%2C MIPS1;Oryzabase Gene Name Synonym(s)=inositol 1-phosphate synthase-1%2C Inositol-3-phosphate synthase%2C Myo-inositol-1-phosphate synthase%2C MI-1-P synthase%2C 1D-myo-inositol 3-phosphate synthase 1%2C rice myo-inositol-1-phosphate synthase%2C Ins(1)P1 synthase 1%2C 1L-myo-inositol-1-phosphate synthase 1%2C myo-inositol-1-phosphate synthase 1%2C L-myo-inositol 1-phosphate synthase 1;Note=Myo-inositol 3-phosphate synthase 1%2C Phytic acid biosynthesis%2C Determination of phytic acid accumulation in grain;Transcript_evidence=AK058750,AK103501;ORF_evidence=O64437;GO=Biological Process: inositol biosynthetic process (GO:0006021),Biological Process: phospholipid biosynthetic process (GO:0008654),Molecular Function: inositol-3-phosphate synthase activity (GO:0004512);InterPro=NAD(P)-binding domain superfamily (IPR036291),Myo-inositol-1-phosphate synthase (IPR002587),Myo-inositol-1-phosphate synthase%2C GAPDH-like (IPR013021);NIAS_FLcDNA=001-019-H08,J033131B11;Manual Curation=October 21%2C 2019;Literature_PMID=31619750,19021878;Oryzabase=6170;TENOR=Os03t0192700-01
Chr03	irgsp1_rep	five_prime_UTR	4829424	4829533	.	-	.	Parent=Os03t0192700-01
Chr03	irgsp1_rep	CDS	4829236	4829423	.	-	0	Parent=Os03t0192700-01
Chr03	irgsp1_rep	CDS	4828603	4828671	.	-	1	Parent=Os03t0192700-01
Chr03	irgsp1_rep	CDS	4828372	4828507	.	-	1	Parent=Os03t0192700-01
Chr03	irgsp1_rep	CDS	4827705	4827952	.	-	0	Parent=Os03t0192700-01
Chr03	irgsp1_rep	CDS	4827127	4827353	.	-	1	Parent=Os03t0192700-01
Chr03	irgsp1_rep	CDS	4826936	4827051	.	-	2	Parent=Os03t0192700-01
Chr03	irgsp1_rep	CDS	4826644	4826820	.	-	0	Parent=Os03t0192700-01
Chr03	irgsp1_rep	CDS	4826362	4826550	.	-	0	Parent=Os03t0192700-01
Chr03	irgsp1_rep	CDS	4826189	4826251	.	-	0	Parent=Os03t0192700-01
Chr03	irgsp1_rep	CDS	4825967	4826086	.	-	0	Parent=Os03t0192700-01
Chr03	irgsp1_rep	three_prime_UTR	4825697	4825966	.	-	.	Parent=Os03t0192700-01
Chr03	irgsp1_rep	mRNA	4825723	4827060	.	+	.	ID=Os03t0192750-00;Name=Os03t0192750-00;Locus_id=Os03g0192750;Note=Hypothetical gene.;Transcript_evidence=BT019116 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0192750-00;KEGG=Os03t0192750-00
Chr03	irgsp1_rep	five_prime_UTR	4825723	4826088	.	+	.	Parent=Os03t0192750-00
Chr03	irgsp1_rep	five_prime_UTR	4826192	4826253	.	+	.	Parent=Os03t0192750-00
Chr03	irgsp1_rep	five_prime_UTR	4826365	4826422	.	+	.	Parent=Os03t0192750-00
Chr03	irgsp1_rep	CDS	4826423	4826572	.	+	0	Parent=Os03t0192750-00
Chr03	irgsp1_rep	CDS	4826667	4826807	.	+	0	Parent=Os03t0192750-00
Chr03	irgsp1_rep	three_prime_UTR	4826808	4826820	.	+	.	Parent=Os03t0192750-00
Chr03	irgsp1_rep	three_prime_UTR	4826936	4827060	.	+	.	Parent=Os03t0192750-00
Chr03	irgsp1_rep	mRNA	4836142	4838183	.	+	.	ID=Os03t0192800-01;Name=Os03t0192800-01;Locus_id=Os03g0192800;CGSNL Gene Symbol=UBP11;CGSNL Gene Name=UBIQUITIN-SPECIFIC PROCESSING PROTEASE 11;Oryzabase Gene Symbol Synonym(s)=OsUBP11%2C OsUBP26%2C UBP26;Oryzabase Gene Name Synonym(s)=ubiquitin-specific processing protease 11%2C Ubiquitin-specific protease 26;Note=Similar to Ubiquitin-specific protease 26.;Transcript_evidence=AK110648 (DDBJ%2C Best hit);ORF_evidence=B9F5M9 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Molecular Function: ubiquitin thiolesterase activity (GO:0004221);InterPro=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (IPR001394),Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2%2C conserved site (IPR018200);NIAS_FLcDNA=002-169-D10;Oryzabase=22895;Expression=AK110648;TENOR=Os03t0192800-01;KEGG=Os03t0192800-01 (EC:3.1.2.15)
Chr03	irgsp1_rep	five_prime_UTR	4836142	4836385	.	+	.	Parent=Os03t0192800-01
Chr03	irgsp1_rep	five_prime_UTR	4836554	4836613	.	+	.	Parent=Os03t0192800-01
Chr03	irgsp1_rep	CDS	4836614	4836690	.	+	0	Parent=Os03t0192800-01
Chr03	irgsp1_rep	CDS	4836818	4837414	.	+	1	Parent=Os03t0192800-01
Chr03	irgsp1_rep	CDS	4837907	4838168	.	+	1	Parent=Os03t0192800-01
Chr03	irgsp1_rep	three_prime_UTR	4838169	4838183	.	+	.	Parent=Os03t0192800-01
Chr03	irgsp1_rep	mRNA	4842276	4844355	.	+	.	ID=Os03t0192900-01;Name=Os03t0192900-01;Locus_id=Os03g0192900;Note=Similar to Ubiquitin-specific protease 26.;Transcript_evidence=AK105104 (DDBJ%2C Best hit);ORF_evidence=B9F5M9 (UniProt);NIAS_FLcDNA=001-100-D11;Expression=AK105104;TENOR=Os03t0192900-01;KEGG=Os03t0192900-01 (EC:3.1.2.15)
Chr03	irgsp1_rep	five_prime_UTR	4842276	4842481	.	+	.	Parent=Os03t0192900-01
Chr03	irgsp1_rep	CDS	4842482	4842751	.	+	0	Parent=Os03t0192900-01
Chr03	irgsp1_rep	three_prime_UTR	4842752	4843481	.	+	.	Parent=Os03t0192900-01
Chr03	irgsp1_rep	three_prime_UTR	4843568	4844355	.	+	.	Parent=Os03t0192900-01
Chr03	irgsp1_rep	mRNA	4847241	4853828	.	+	.	ID=Os03t0193000-01;Name=Os03t0193000-01;Locus_id=Os03g0193000;CGSNL Gene Symbol=GRAS12;CGSNL Gene Name=GRAS PROTEIN 12;Oryzabase Gene Symbol Synonym(s)=OsGRAS-12%2C OsGRAS12%2C GRAS-12;Oryzabase Gene Name Synonym(s)=GRAS protein 12;Note=GRAS transcription factor domain containing protein.;Transcript_evidence=AK073386 (DDBJ%2C Best hit);ORF_evidence=F1DK08 (UniProt);InterPro=Transcription factor GRAS (IPR005202);NIAS_FLcDNA=J033041E22;Oryzabase=22786;Expression=AK073386;TENOR=Os03t0193000-01;KEGG=Os03t0193000-01
Chr03	irgsp1_rep	five_prime_UTR	4847241	4847524	.	+	.	Parent=Os03t0193000-01
Chr03	irgsp1_rep	five_prime_UTR	4850210	4850279	.	+	.	Parent=Os03t0193000-01
Chr03	irgsp1_rep	five_prime_UTR	4850711	4850842	.	+	.	Parent=Os03t0193000-01
Chr03	irgsp1_rep	CDS	4850843	4852450	.	+	0	Parent=Os03t0193000-01
Chr03	irgsp1_rep	three_prime_UTR	4852451	4852484	.	+	.	Parent=Os03t0193000-01
Chr03	irgsp1_rep	three_prime_UTR	4853376	4853828	.	+	.	Parent=Os03t0193000-01
Chr03	irgsp1_rep	mRNA	4854990	4857531	.	+	.	ID=Os03t0193075-01;Name=Os03t0193075-01;Locus_id=Os03g0193075;Note=Similar to Yippee-like protein OJ1003C07.11.;Transcript_evidence=AK242374 (DDBJ%2C Best hit);ORF_evidence=NP_001149192.1 (RefSeq);InterPro=Yippee-like protein (IPR004910);NIAS_FLcDNA=J080038H08;TENOR=Os03t0193075-01;KEGG=Os03t0193075-01
Chr03	irgsp1_rep	five_prime_UTR	4854990	4855215	.	+	.	Parent=Os03t0193075-01
Chr03	irgsp1_rep	CDS	4855216	4855358	.	+	0	Parent=Os03t0193075-01
Chr03	irgsp1_rep	CDS	4856101	4856209	.	+	1	Parent=Os03t0193075-01
Chr03	irgsp1_rep	CDS	4857261	4857341	.	+	0	Parent=Os03t0193075-01
Chr03	irgsp1_rep	three_prime_UTR	4857342	4857531	.	+	.	Parent=Os03t0193075-01
Chr03	irgsp1_rep	mRNA	4862250	4866734	.	-	.	ID=Os03t0193225-01;Name=Os03t0193225-01;Locus_id=Os03g0193225;Note=Frigida-like family protein.;Transcript_evidence=AK069459 (DDBJ%2C Best hit);ORF_evidence=B6U6J6 (UniProt);InterPro=Frigida-like (IPR012474);NIAS_FLcDNA=J023019D20;TENOR=Os03t0193225-01;KEGG=Os03t0193225-01
Chr03	irgsp1_rep	five_prime_UTR	4866700	4866734	.	-	.	Parent=Os03t0193225-01
Chr03	irgsp1_rep	CDS	4866015	4866699	.	-	0	Parent=Os03t0193225-01
Chr03	irgsp1_rep	CDS	4863154	4863326	.	-	2	Parent=Os03t0193225-01
Chr03	irgsp1_rep	CDS	4862383	4863069	.	-	0	Parent=Os03t0193225-01
Chr03	irgsp1_rep	three_prime_UTR	4862250	4862382	.	-	.	Parent=Os03t0193225-01
Chr03	irgsp1_rep	mRNA	4873378	4877257	.	-	.	ID=Os03t0193300-01;Name=Os03t0193300-01;Locus_id=Os03g0193300;Note=Conserved hypothetical protein.;Transcript_evidence=AK099998 (DDBJ%2C Best hit);ORF_evidence=B9F5N6 (UniProt);NIAS_FLcDNA=J013134C19;TENOR=Os03t0193300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	4876930	4877257	.	-	.	Parent=Os03t0193300-01
Chr03	irgsp1_rep	five_prime_UTR	4876707	4876913	.	-	.	Parent=Os03t0193300-01
Chr03	irgsp1_rep	CDS	4876434	4876706	.	-	0	Parent=Os03t0193300-01
Chr03	irgsp1_rep	three_prime_UTR	4876430	4876433	.	-	.	Parent=Os03t0193300-01
Chr03	irgsp1_rep	three_prime_UTR	4875654	4876013	.	-	.	Parent=Os03t0193300-01
Chr03	irgsp1_rep	three_prime_UTR	4875168	4875270	.	-	.	Parent=Os03t0193300-01
Chr03	irgsp1_rep	three_prime_UTR	4874820	4875075	.	-	.	Parent=Os03t0193300-01
Chr03	irgsp1_rep	three_prime_UTR	4874599	4874714	.	-	.	Parent=Os03t0193300-01
Chr03	irgsp1_rep	three_prime_UTR	4874404	4874466	.	-	.	Parent=Os03t0193300-01
Chr03	irgsp1_rep	three_prime_UTR	4873378	4873761	.	-	.	Parent=Os03t0193300-01
Chr03	irgsp1_rep	mRNA	4873834	4877133	.	-	.	ID=Os03t0193300-02;Name=Os03t0193300-02;Locus_id=Os03g0193300;Note=Conserved hypothetical protein.;Transcript_evidence=AK069156 (DDBJ%2C Best hit);ORF_evidence=B9F5N6 (UniProt);NIAS_FLcDNA=J023007L22;TENOR=Os03t0193300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	4876707	4877133	.	-	.	Parent=Os03t0193300-02
Chr03	irgsp1_rep	CDS	4876434	4876706	.	-	0	Parent=Os03t0193300-02
Chr03	irgsp1_rep	three_prime_UTR	4876430	4876433	.	-	.	Parent=Os03t0193300-02
Chr03	irgsp1_rep	three_prime_UTR	4875654	4876013	.	-	.	Parent=Os03t0193300-02
Chr03	irgsp1_rep	three_prime_UTR	4875168	4875270	.	-	.	Parent=Os03t0193300-02
Chr03	irgsp1_rep	three_prime_UTR	4874820	4875075	.	-	.	Parent=Os03t0193300-02
Chr03	irgsp1_rep	three_prime_UTR	4874599	4874714	.	-	.	Parent=Os03t0193300-02
Chr03	irgsp1_rep	three_prime_UTR	4873834	4874497	.	-	.	Parent=Os03t0193300-02
Chr03	irgsp1_rep	mRNA	4868172	4880170	.	+	.	ID=Os03t0193400-00;Name=Os03t0193400-00;Locus_id=Os03g0193400;CGSNL Gene Symbol=PAOA;CGSNL Gene Name=POLYAMINE OXIDASE A;Oryzabase Gene Symbol Synonym(s)=PAOa%2C OsPAO2%2C PAO2%2C OsPAOa;Oryzabase Gene Name Synonym(s)=Polyamine oxidase a%2C Polyamine oxidase 2;Note=Similar to polyamine oxidase precursor.;Transcript_evidence=AJ298131 (DDBJ);ORF_evidence=NP_001105106.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Amine oxidase (IPR002937);Oryzabase=11222;TENOR=Os03t0193400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	4868172	4868230	.	+	0	Parent=Os03t0193400-00
Chr03	irgsp1_rep	CDS	4868498	4868644	.	+	1	Parent=Os03t0193400-00
Chr03	irgsp1_rep	CDS	4877657	4877912	.	+	1	Parent=Os03t0193400-00
Chr03	irgsp1_rep	CDS	4878062	4878206	.	+	0	Parent=Os03t0193400-00
Chr03	irgsp1_rep	CDS	4878284	4878285	.	+	2	Parent=Os03t0193400-00
Chr03	irgsp1_rep	three_prime_UTR	4878286	4878433	.	+	.	Parent=Os03t0193400-00
Chr03	irgsp1_rep	three_prime_UTR	4879513	4879770	.	+	.	Parent=Os03t0193400-00
Chr03	irgsp1_rep	three_prime_UTR	4879897	4879978	.	+	.	Parent=Os03t0193400-00
Chr03	irgsp1_rep	three_prime_UTR	4880064	4880170	.	+	.	Parent=Os03t0193400-00
Chr03	irgsp1_rep	mRNA	4877659	4880015	.	-	.	ID=Os03t0193450-00;Name=Os03t0193450-00;Locus_id=Os03g0193450;Note=Non-protein coding transcript.;Transcript_evidence=tplb0036e02 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os03t0193450-00
Chr03	irgsp1_rep	exon	4879892	4880015	.	-	.	Parent=Os03t0193450-00
Chr03	irgsp1_rep	exon	4879484	4879764	.	-	.	Parent=Os03t0193450-00
Chr03	irgsp1_rep	exon	4878308	4878417	.	-	.	Parent=Os03t0193450-00
Chr03	irgsp1_rep	exon	4878060	4878227	.	-	.	Parent=Os03t0193450-00
Chr03	irgsp1_rep	exon	4877659	4877910	.	-	.	Parent=Os03t0193450-00
Chr03	irgsp1_rep	mRNA	4886388	4887435	.	+	.	ID=Os03t0193600-00;Name=Os03t0193600-00;Locus_id=Os03g0193600;Note=Transcription factor TFIIB domain containing protein.;Transcript_evidence=AK375156 (DDBJ);ORF_evidence=Q8H7W1 (UniProt);GO=Biological Process: transcription initiation%2C DNA-dependent (GO:0006352),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: translational initiation (GO:0006413),Molecular Function: translation initiation factor activity (GO:0003743),Molecular Function: zinc ion binding (GO:0008270);InterPro=Transcription factor TFIIB (IPR000812),Zinc finger%2C TFIIB-type (IPR013137),Transcription factor TFIIB%2C cyclin-related (IPR013150),Cyclin-like (IPR013763);TENOR=Os03t0193600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	4886388	4887314	.	+	0	Parent=Os03t0193600-00
Chr03	irgsp1_rep	three_prime_UTR	4887315	4887435	.	+	.	Parent=Os03t0193600-00
Chr03	irgsp1_rep	mRNA	4888551	4889232	.	+	.	ID=Os03t0193700-00;Name=Os03t0193700-00;Locus_id=Os03g0193700;Note=Terpenoid cylases/protein prenyltransferase alpha-alpha toroid domain containing protein.;Transcript_evidence=CT828183 (DDBJ%2C Best hit);ORF_evidence=NP_001173298.1 (RefSeq);TENOR=Os03t0193700-00
Chr03	irgsp1_rep	five_prime_UTR	4888551	4888610	.	+	.	Parent=Os03t0193700-00
Chr03	irgsp1_rep	CDS	4888611	4888940	.	+	0	Parent=Os03t0193700-00
Chr03	irgsp1_rep	three_prime_UTR	4888941	4889232	.	+	.	Parent=Os03t0193700-00
Chr03	irgsp1_rep	mRNA	4888584	4889614	.	-	.	ID=Os03t0193901-00;Name=Os03t0193901-00;Locus_id=Os03g0193901;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8BKS9 (UniProt);TENOR=Os03t0193901-00
Chr03	irgsp1_rep	CDS	4889244	4889614	.	-	0	Parent=Os03t0193901-00
Chr03	irgsp1_rep	CDS	4889051	4889174	.	-	1	Parent=Os03t0193901-00
Chr03	irgsp1_rep	CDS	4888584	4889012	.	-	0	Parent=Os03t0193901-00
Chr03	irgsp1_rep	mRNA	4894537	4897016	.	-	.	ID=Os03t0194100-01;Name=Os03t0194100-01;Locus_id=Os03g0194100;Note=C2 calcium-dependent membrane targeting domain containing protein.;Transcript_evidence=AK073045 (DDBJ%2C Best hit);ORF_evidence=A2XDH5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973);NIAS_FLcDNA=J033007C02;Expression=AK073045;TENOR=Os03t0194100-01;KEGG=Os03t0194100-01
Chr03	irgsp1_rep	five_prime_UTR	4896943	4897016	.	-	.	Parent=Os03t0194100-01
Chr03	irgsp1_rep	five_prime_UTR	4896191	4896261	.	-	.	Parent=Os03t0194100-01
Chr03	irgsp1_rep	five_prime_UTR	4895931	4895946	.	-	.	Parent=Os03t0194100-01
Chr03	irgsp1_rep	CDS	4894722	4895930	.	-	0	Parent=Os03t0194100-01
Chr03	irgsp1_rep	three_prime_UTR	4894537	4894721	.	-	.	Parent=Os03t0194100-01
Chr03	irgsp1_rep	mRNA	4901969	4903749	.	-	.	ID=Os03t0194300-01;Name=Os03t0194300-01;Locus_id=Os03g0194300;Note=Uncharacterised conserved protein UCP037471 domain containing protein.;Transcript_evidence=AK242163 (DDBJ%2C Best hit);ORF_evidence=NP_001152259.1 (RefSeq);InterPro=DOMON domain (IPR005018),CytoChrome b561/ferric reductase transmembrane (IPR006593),Uncharacterised conserved protein UCP037471 (IPR017214);NIAS_FLcDNA=J075156H17;TENOR=Os03t0194300-01;KEGG=Os03t0194300-01
Chr03	irgsp1_rep	five_prime_UTR	4903609	4903749	.	-	.	Parent=Os03t0194300-01
Chr03	irgsp1_rep	CDS	4902355	4903608	.	-	0	Parent=Os03t0194300-01
Chr03	irgsp1_rep	three_prime_UTR	4901969	4902354	.	-	.	Parent=Os03t0194300-01
Chr03	irgsp1_rep	mRNA	4902355	4903820	.	+	.	ID=Os03t0194350-00;Name=Os03t0194350-00;Locus_id=Os03g0194350;Note=Hypothetical protein.;Transcript_evidence=AK358044 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0194350-00
Chr03	irgsp1_rep	five_prime_UTR	4902355	4903099	.	+	.	Parent=Os03t0194350-00
Chr03	irgsp1_rep	CDS	4903100	4903624	.	+	0	Parent=Os03t0194350-00
Chr03	irgsp1_rep	CDS	4903685	4903726	.	+	0	Parent=Os03t0194350-00
Chr03	irgsp1_rep	three_prime_UTR	4903727	4903820	.	+	.	Parent=Os03t0194350-00
Chr03	irgsp1_rep	mRNA	4906251	4908791	.	+	.	ID=Os03t0194400-01;Name=Os03t0194400-01;Locus_id=Os03g0194400;Note=Similar to Acetyltransferase%2C GNAT family protein%2C expressed.;Transcript_evidence=AK103687 (DDBJ%2C Best hit);ORF_evidence=Q10QJ2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: N-acetyltransferase activity (GO:0008080);InterPro=GCN5-related N-acetyltransferase (GNAT) domain (IPR000182),Acyl-CoA N-acyltransferase (IPR016181);NIAS_FLcDNA=J033136F22;TENOR=Os03t0194400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	4906251	4906303	.	+	.	Parent=Os03t0194400-01
Chr03	irgsp1_rep	CDS	4906304	4906538	.	+	0	Parent=Os03t0194400-01
Chr03	irgsp1_rep	CDS	4906658	4906729	.	+	2	Parent=Os03t0194400-01
Chr03	irgsp1_rep	CDS	4907230	4907317	.	+	2	Parent=Os03t0194400-01
Chr03	irgsp1_rep	CDS	4907694	4907841	.	+	1	Parent=Os03t0194400-01
Chr03	irgsp1_rep	CDS	4907931	4907969	.	+	0	Parent=Os03t0194400-01
Chr03	irgsp1_rep	CDS	4908283	4908348	.	+	0	Parent=Os03t0194400-01
Chr03	irgsp1_rep	three_prime_UTR	4908349	4908791	.	+	.	Parent=Os03t0194400-01
Chr03	irgsp1_rep	mRNA	4909646	4912104	.	-	.	ID=Os03t0194450-00;Name=Os03t0194450-00;Locus_id=Os03g0194450;Note=Hypothetical gene.;Transcript_evidence=BT019071 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0194450-00;KEGG=Os03t0194450-00
Chr03	irgsp1_rep	five_prime_UTR	4911883	4912104	.	-	.	Parent=Os03t0194450-00
Chr03	irgsp1_rep	CDS	4911829	4911882	.	-	0	Parent=Os03t0194450-00
Chr03	irgsp1_rep	CDS	4910654	4910699	.	-	0	Parent=Os03t0194450-00
Chr03	irgsp1_rep	CDS	4910473	4910543	.	-	2	Parent=Os03t0194450-00
Chr03	irgsp1_rep	CDS	4910314	4910391	.	-	0	Parent=Os03t0194450-00
Chr03	irgsp1_rep	three_prime_UTR	4910306	4910313	.	-	.	Parent=Os03t0194450-00
Chr03	irgsp1_rep	three_prime_UTR	4909646	4909873	.	-	.	Parent=Os03t0194450-00
Chr03	irgsp1_rep	mRNA	4909687	4912354	.	+	.	ID=Os03t0194500-01;Name=Os03t0194500-01;Locus_id=Os03g0194500;Note=Similar to Protein translocase/ protein transporter.;Transcript_evidence=AK242198 (DDBJ%2C Best hit);ORF_evidence=B6T215 (UniProt);InterPro=Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 (IPR003397);NIAS_FLcDNA=J075166C21;TENOR=Os03t0194500-01;KEGG=Os03t0194500-01
Chr03	irgsp1_rep	five_prime_UTR	4909687	4909701	.	+	.	Parent=Os03t0194500-01
Chr03	irgsp1_rep	CDS	4909702	4909888	.	+	0	Parent=Os03t0194500-01
Chr03	irgsp1_rep	CDS	4910322	4910386	.	+	2	Parent=Os03t0194500-01
Chr03	irgsp1_rep	CDS	4910471	4910543	.	+	0	Parent=Os03t0194500-01
Chr03	irgsp1_rep	CDS	4910654	4910707	.	+	2	Parent=Os03t0194500-01
Chr03	irgsp1_rep	CDS	4911832	4912064	.	+	2	Parent=Os03t0194500-01
Chr03	irgsp1_rep	three_prime_UTR	4912065	4912354	.	+	.	Parent=Os03t0194500-01
Chr03	irgsp1_rep	mRNA	4913314	4914063	.	+	.	ID=Os03t0194600-01;Name=Os03t0194600-01;Locus_id=Os03g0194600;Note=Protein of unknown function DUF568%2C DOMON-like domain containing protein.;Transcript_evidence=AK062839 (DDBJ%2C Best hit);ORF_evidence=NP_001152720.1 (RefSeq);InterPro=DOMON domain (IPR005018),Uncharacterised conserved protein UCP037471 (IPR017214);NIAS_FLcDNA=001-107-H03;Expression=AK062839;TENOR=Os03t0194600-01;KEGG=Os03t0194600-01
Chr03	irgsp1_rep	five_prime_UTR	4913314	4913365	.	+	.	Parent=Os03t0194600-01
Chr03	irgsp1_rep	CDS	4913366	4913947	.	+	0	Parent=Os03t0194600-01
Chr03	irgsp1_rep	three_prime_UTR	4913948	4914063	.	+	.	Parent=Os03t0194600-01
Chr03	irgsp1_rep	mRNA	4923937	4926075	.	+	.	ID=Os03t0194900-01;Name=Os03t0194900-01;Locus_id=Os03g0194900;Note=Uncharacterised conserved protein UCP037471 domain containing protein.;Transcript_evidence=AK104041 (DDBJ%2C Best hit),AK070149 (DDBJ%2C Best hit);ORF_evidence=NP_001151876.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=CytoChrome b561%2C eukaryote (IPR004877),DOMON domain (IPR005018),CytoChrome b561/ferric reductase transmembrane (IPR006593),Uncharacterised conserved protein UCP037471 (IPR017214);NIAS_FLcDNA=001-021-H11,J023042P18;Expression=AK104041;TENOR=Os03t0194900-01;KEGG=Os03t0194900-01
Chr03	irgsp1_rep	five_prime_UTR	4923937	4924046	.	+	.	Parent=Os03t0194900-01
Chr03	irgsp1_rep	CDS	4924047	4924649	.	+	0	Parent=Os03t0194900-01
Chr03	irgsp1_rep	CDS	4925259	4925810	.	+	0	Parent=Os03t0194900-01
Chr03	irgsp1_rep	three_prime_UTR	4925811	4926075	.	+	.	Parent=Os03t0194900-01
Chr03	irgsp1_rep	mRNA	4923937	4925041	.	+	.	ID=Os03t0194900-02;Name=Os03t0194900-02;Locus_id=Os03g0194900;Note=Similar to membrane protein.;Transcript_evidence=AK061389 (DDBJ%2C Best hit);ORF_evidence=NP_001151876.1 (RefSeq);InterPro=DOMON domain (IPR005018),Uncharacterised conserved protein UCP037471 (IPR017214);NIAS_FLcDNA=006-305-B12;Expression=AK061389;TENOR=Os03t0194900-02;KEGG=Os03t0194900-02
Chr03	irgsp1_rep	five_prime_UTR	4923937	4924046	.	+	.	Parent=Os03t0194900-02
Chr03	irgsp1_rep	CDS	4924047	4924676	.	+	0	Parent=Os03t0194900-02
Chr03	irgsp1_rep	three_prime_UTR	4924677	4925041	.	+	.	Parent=Os03t0194900-02
Chr03	irgsp1_rep	mRNA	4923971	4926075	.	+	.	ID=Os03t0194900-03;Name=Os03t0194900-03;Locus_id=Os03g0194900;Note=Uncharacterised conserved protein UCP037471 domain containing protein.;Transcript_evidence=AK104413 (DDBJ%2C Best hit);ORF_evidence=NP_001151876.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=CytoChrome b561%2C eukaryote (IPR004877),DOMON domain (IPR005018),CytoChrome b561/ferric reductase transmembrane (IPR006593),Uncharacterised conserved protein UCP037471 (IPR017214);NIAS_FLcDNA=006-204-B05;Expression=AK104413;TENOR=Os03t0194900-03;KEGG=Os03t0194900-03
Chr03	irgsp1_rep	five_prime_UTR	4923971	4924046	.	+	.	Parent=Os03t0194900-03
Chr03	irgsp1_rep	CDS	4924047	4924649	.	+	0	Parent=Os03t0194900-03
Chr03	irgsp1_rep	CDS	4925259	4925810	.	+	0	Parent=Os03t0194900-03
Chr03	irgsp1_rep	three_prime_UTR	4925811	4926075	.	+	.	Parent=Os03t0194900-03
Chr03	irgsp1_rep	mRNA	4936472	4941037	.	+	.	ID=Os03t0195100-01;Name=Os03t0195100-01;Locus_id=Os03g0195100;RAP-DB Gene Symbol Synonym(s)=OsALD1;RAP-DB Gene Name Synonym(s)=AGD2-LIKE DEFENSE RESPONSE PROTEIN1%2C ABERRANT GROWTH AND DEATH2 [AGD2]-LIKE DEFENSE1;Oryzabase Gene Symbol Synonym(s)=OsALD1%2C ALD1;Oryzabase Gene Name Synonym(s)=AGD2-LIKE DEFENSE RESPONSE PROTEIN1%2C ABERRANT GROWTH AND DEATH2 [AGD2]-LIKE DEFENSE1%2C AGD2-LIKE DEFENSE 1;Note=Putative aminotransferase%2C Disease resistance response against infection with rice blast fungus;Transcript_evidence=AY338236;ORF_evidence=Q6VMN7;GO=Biological Process: biosynthetic process (GO:0009058),Biological Process: lysine biosynthetic process via diaminopimelate (GO:0009089),Molecular Function: catalytic activity (GO:0003824),Molecular Function: L%2CL-diaminopimelate aminotransferase activity (GO:0010285),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=LL-diaminopimelate aminotransferase (IPR019942),Pyridoxal phosphate-dependent transferase (IPR015424),Aminotransferase%2C class I/classII (IPR004839),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422);Manual Curation=August 25%2C 2016;Literature_PMID=27493611,14729919;Oryzabase=13985;TENOR=Os03t0195100-00;KEGG=Os03t0195100-00 (EC:2.6.1.83)
Chr03	irgsp1_rep	CDS	4936472	4936494	.	+	0	Parent=Os03t0195100-01
Chr03	irgsp1_rep	CDS	4936619	4936677	.	+	1	Parent=Os03t0195100-01
Chr03	irgsp1_rep	CDS	4936787	4936857	.	+	2	Parent=Os03t0195100-01
Chr03	irgsp1_rep	CDS	4936971	4937087	.	+	0	Parent=Os03t0195100-01
Chr03	irgsp1_rep	CDS	4939557	4939619	.	+	0	Parent=Os03t0195100-01
Chr03	irgsp1_rep	CDS	4939805	4939909	.	+	0	Parent=Os03t0195100-01
Chr03	irgsp1_rep	CDS	4940054	4940104	.	+	0	Parent=Os03t0195100-01
Chr03	irgsp1_rep	CDS	4940204	4941037	.	+	0	Parent=Os03t0195100-01
Chr03	irgsp1_rep	mRNA	4941404	4945558	.	-	.	ID=Os03t0195200-01;Name=Os03t0195200-01;Locus_id=Os03g0195200;Note=Protein of unknown function DUF367 domain containing protein.;Transcript_evidence=AK068949 (DDBJ%2C Best hit);ORF_evidence=Q10QI5 (UniProt);InterPro=Domain of unknown function DUF367 (IPR007177),RNase L inhibitor RLI%2C possible metal-binding domain (IPR007209);NIAS_FLcDNA=J023003M16;Expression=AK068949;TENOR=Os03t0195200-01;KEGG=Os03t0195200-01
Chr03	irgsp1_rep	five_prime_UTR	4945335	4945558	.	-	.	Parent=Os03t0195200-01
Chr03	irgsp1_rep	CDS	4945258	4945334	.	-	0	Parent=Os03t0195200-01
Chr03	irgsp1_rep	CDS	4944660	4944697	.	-	1	Parent=Os03t0195200-01
Chr03	irgsp1_rep	CDS	4944335	4944381	.	-	2	Parent=Os03t0195200-01
Chr03	irgsp1_rep	CDS	4944183	4944248	.	-	0	Parent=Os03t0195200-01
Chr03	irgsp1_rep	CDS	4943879	4943919	.	-	0	Parent=Os03t0195200-01
Chr03	irgsp1_rep	CDS	4943638	4943774	.	-	1	Parent=Os03t0195200-01
Chr03	irgsp1_rep	CDS	4943215	4943305	.	-	2	Parent=Os03t0195200-01
Chr03	irgsp1_rep	CDS	4942602	4942673	.	-	1	Parent=Os03t0195200-01
Chr03	irgsp1_rep	CDS	4942022	4942128	.	-	1	Parent=Os03t0195200-01
Chr03	irgsp1_rep	CDS	4941794	4941936	.	-	2	Parent=Os03t0195200-01
Chr03	irgsp1_rep	three_prime_UTR	4941404	4941793	.	-	.	Parent=Os03t0195200-01
Chr03	irgsp1_rep	mRNA	4946360	4950941	.	-	.	ID=Os03t0195300-01;Name=Os03t0195300-01;Locus_id=Os03g0195300;CGSNL Gene Symbol=SULTR2%3B2;CGSNL Gene Name=SULPHATE TRANSPORTER 2%3B2;Oryzabase Gene Symbol Synonym(s)=OsSultr2%3B2%2C OsSul2%3B2%2C OsaSULTR2%3B1%2C SULTR2%3B1%2C OsSULTR2%3B1;Oryzabase Gene Name Synonym(s)=sulphate transporter 2%3B2;Note=Similar to Low affinity sulphate transporter 3.;Transcript_evidence=AK067353 (DDBJ%2C Best hit);ORF_evidence=XP_002302276.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: sulfate transport (GO:0008272),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: secondary active sulfate transmembrane transporter activity (GO:0008271);InterPro=Sulphate anion transporter (IPR001902),Sulphate transporter/antisigma-factor antagonist STAS (IPR002645),Sulphate transporter (IPR011547),Sulphate anion transporter%2C conserved site (IPR018045);NIAS_FLcDNA=J013100L12;Oryzabase=9319;Expression=AK067353;TENOR=Os03t0195300-01;KEGG=Os03t0195300-01
Chr03	irgsp1_rep	five_prime_UTR	4950857	4950941	.	-	.	Parent=Os03t0195300-01
Chr03	irgsp1_rep	CDS	4950518	4950856	.	-	0	Parent=Os03t0195300-01
Chr03	irgsp1_rep	CDS	4950247	4950295	.	-	0	Parent=Os03t0195300-01
Chr03	irgsp1_rep	CDS	4949963	4950170	.	-	2	Parent=Os03t0195300-01
Chr03	irgsp1_rep	CDS	4949712	4949886	.	-	1	Parent=Os03t0195300-01
Chr03	irgsp1_rep	CDS	4949052	4949117	.	-	0	Parent=Os03t0195300-01
Chr03	irgsp1_rep	CDS	4948718	4948948	.	-	0	Parent=Os03t0195300-01
Chr03	irgsp1_rep	CDS	4948022	4948148	.	-	0	Parent=Os03t0195300-01
Chr03	irgsp1_rep	CDS	4947655	4947941	.	-	2	Parent=Os03t0195300-01
Chr03	irgsp1_rep	CDS	4947327	4947520	.	-	0	Parent=Os03t0195300-01
Chr03	irgsp1_rep	CDS	4947173	4947234	.	-	1	Parent=Os03t0195300-01
Chr03	irgsp1_rep	CDS	4947013	4947089	.	-	2	Parent=Os03t0195300-01
Chr03	irgsp1_rep	CDS	4946725	4946880	.	-	0	Parent=Os03t0195300-01
Chr03	irgsp1_rep	three_prime_UTR	4946360	4946724	.	-	.	Parent=Os03t0195300-01
Chr03	irgsp1_rep	mRNA	4946751	4950744	.	+	.	ID=Os03t0195350-00;Name=Os03t0195350-00;Locus_id=Os03g0195350;Note=Non-protein coding transcript.;Transcript_evidence=tplb0023b09 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os03t0195350-00
Chr03	irgsp1_rep	exon	4946751	4946891	.	+	.	Parent=Os03t0195350-00
Chr03	irgsp1_rep	exon	4947025	4947126	.	+	.	Parent=Os03t0195350-00
Chr03	irgsp1_rep	exon	4947282	4947521	.	+	.	Parent=Os03t0195350-00
Chr03	irgsp1_rep	exon	4947656	4947964	.	+	.	Parent=Os03t0195350-00
Chr03	irgsp1_rep	exon	4948048	4948150	.	+	.	Parent=Os03t0195350-00
Chr03	irgsp1_rep	exon	4948724	4948960	.	+	.	Parent=Os03t0195350-00
Chr03	irgsp1_rep	exon	4949659	4949884	.	+	.	Parent=Os03t0195350-00
Chr03	irgsp1_rep	exon	4949956	4950193	.	+	.	Parent=Os03t0195350-00
Chr03	irgsp1_rep	exon	4950494	4950744	.	+	.	Parent=Os03t0195350-00
Chr03	irgsp1_rep	mRNA	4951886	4953344	.	-	.	ID=Os03t0195400-01;Name=Os03t0195400-01;Locus_id=Os03g0195400;Note=Hypothetical gene.;Transcript_evidence=AK064567 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-112-D05;Expression=AK064567;TENOR=Os03t0195400-01;KEGG=Os03t0195400-01
Chr03	irgsp1_rep	five_prime_UTR	4953054	4953344	.	-	.	Parent=Os03t0195400-01
Chr03	irgsp1_rep	CDS	4952832	4953053	.	-	0	Parent=Os03t0195400-01
Chr03	irgsp1_rep	three_prime_UTR	4951886	4952831	.	-	.	Parent=Os03t0195400-01
Chr03	irgsp1_rep	mRNA	4954143	4954913	.	-	.	ID=Os03t0195450-00;Name=Os03t0195450-00;Locus_id=Os03g0195450;CGSNL Gene Symbol=SULTR2%3B1;CGSNL Gene Name=SULPHATE TRANSPORTER 2%3B1;Oryzabase Gene Symbol Synonym(s)=OsSultr2%3B1%2C OsSul2%3B1%2C OsaSULTR2%2C SULTR2;Oryzabase Gene Name Synonym(s)=sulphate transporter 2%3B1;Note=Similar to sulfate/bicarbonate/oxalate exchanger and transporter sat-1.;Transcript_evidence=CT835280 (DDBJ%2C Best hit);ORF_evidence=D4IIA9 (UniProt);InterPro=Sulphate transporter/antisigma-factor antagonist STAS (IPR002645);Oryzabase=9318;TENOR=Os03t0195450-00;KEGG=Os03t0195450-00
Chr03	irgsp1_rep	CDS	4954862	4954913	.	-	0	Parent=Os03t0195450-00
Chr03	irgsp1_rep	CDS	4954678	4954754	.	-	2	Parent=Os03t0195450-00
Chr03	irgsp1_rep	CDS	4954427	4954579	.	-	0	Parent=Os03t0195450-00
Chr03	irgsp1_rep	three_prime_UTR	4954143	4954426	.	-	.	Parent=Os03t0195450-00
Chr03	irgsp1_rep	mRNA	4954410	4959369	.	+	.	ID=Os03t0195475-00;Name=Os03t0195475-00;Locus_id=Os03g0195475;Note=Hypothetical protein.;Transcript_evidence=tplb0023b09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0195475-00
Chr03	irgsp1_rep	five_prime_UTR	4954410	4954597	.	+	.	Parent=Os03t0195475-00
Chr03	irgsp1_rep	five_prime_UTR	4954692	4954773	.	+	.	Parent=Os03t0195475-00
Chr03	irgsp1_rep	five_prime_UTR	4954883	4954930	.	+	.	Parent=Os03t0195475-00
Chr03	irgsp1_rep	five_prime_UTR	4955014	4955222	.	+	.	Parent=Os03t0195475-00
Chr03	irgsp1_rep	five_prime_UTR	4955331	4955601	.	+	.	Parent=Os03t0195475-00
Chr03	irgsp1_rep	five_prime_UTR	4955701	4955770	.	+	.	Parent=Os03t0195475-00
Chr03	irgsp1_rep	CDS	4955771	4955856	.	+	0	Parent=Os03t0195475-00
Chr03	irgsp1_rep	CDS	4956094	4956317	.	+	1	Parent=Os03t0195475-00
Chr03	irgsp1_rep	CDS	4956483	4956543	.	+	2	Parent=Os03t0195475-00
Chr03	irgsp1_rep	CDS	4957796	4957983	.	+	1	Parent=Os03t0195475-00
Chr03	irgsp1_rep	CDS	4958074	4958270	.	+	2	Parent=Os03t0195475-00
Chr03	irgsp1_rep	CDS	4958392	4958424	.	+	0	Parent=Os03t0195475-00
Chr03	irgsp1_rep	CDS	4958740	4958754	.	+	0	Parent=Os03t0195475-00
Chr03	irgsp1_rep	three_prime_UTR	4958755	4959369	.	+	.	Parent=Os03t0195475-00
Chr03	irgsp1_rep	mRNA	4957502	4959448	.	-	.	ID=Os03t0195500-01;Name=Os03t0195500-01;Locus_id=Os03g0195500;CGSNL Gene Symbol=SULTR2%3B1;CGSNL Gene Name=SULPHATE TRANSPORTER 2%3B1;Oryzabase Gene Symbol Synonym(s)=OsSultr2%3B1%2C OsSul2%3B1%2C OsaSULTR2%2C SULTR2;Oryzabase Gene Name Synonym(s)=sulphate transporter 2%3B1;Note=Similar to Sulfate permease (Fragment).;Transcript_evidence=AK111395 (DDBJ%2C Best hit);ORF_evidence=XP_002302276.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: sulfate transport (GO:0008272),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: secondary active sulfate transmembrane transporter activity (GO:0008271);InterPro=Sulphate transporter (IPR011547),Sulphate anion transporter%2C conserved site (IPR018045);NIAS_FLcDNA=002-182-D04;Oryzabase=9318;Expression=AK111395;TENOR=Os03t0195500-01;KEGG=Os03t0195500-01
Chr03	irgsp1_rep	five_prime_UTR	4959081	4959448	.	-	.	Parent=Os03t0195500-01
Chr03	irgsp1_rep	CDS	4958751	4959080	.	-	0	Parent=Os03t0195500-01
Chr03	irgsp1_rep	CDS	4958388	4958436	.	-	0	Parent=Os03t0195500-01
Chr03	irgsp1_rep	CDS	4958065	4958272	.	-	2	Parent=Os03t0195500-01
Chr03	irgsp1_rep	CDS	4957712	4957976	.	-	1	Parent=Os03t0195500-01
Chr03	irgsp1_rep	three_prime_UTR	4957502	4957711	.	-	.	Parent=Os03t0195500-01
Chr03	irgsp1_rep	mRNA	4987877	4992392	.	+	.	ID=Os03t0195800-01;Name=Os03t0195800-01;Locus_id=Os03g0195800;CGSNL Gene Symbol=SULTR1%3B1;CGSNL Gene Name=SULPHATE TRANSPORTER 1%3B1;Oryzabase Gene Symbol Synonym(s)=OsSultr1%3B1%2C OsSul1%3B1%2C Sul1%3B1%2C OsSultr1%3B1(a)%2C OsSultr1%3B1(b);Oryzabase Gene Name Synonym(s)=sulphate transporter 1%3B1%2C arsenic-responsive high affinity sulfate transporter%2C sulfate transporter 1%3B1;Note=Similar to Sulfate transporter (Fragment).;Transcript_evidence=AK103007 (DDBJ%2C Best hit);ORF_evidence=A7YF68 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: sulfate transport (GO:0008272),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: secondary active sulfate transmembrane transporter activity (GO:0008271);InterPro=Sulphate anion transporter (IPR001902),Sulphate transporter/antisigma-factor antagonist STAS (IPR002645),Sulphate transporter (IPR011547),Sulphate anion transporter%2C conserved site (IPR018045);NIAS_FLcDNA=J033116I10;Oryzabase=9314;Expression=AK103007;TENOR=Os03t0195800-01;KEGG=Os03t0195800-01
Chr03	irgsp1_rep	five_prime_UTR	4987877	4988260	.	+	.	Parent=Os03t0195800-01
Chr03	irgsp1_rep	CDS	4988261	4988608	.	+	0	Parent=Os03t0195800-01
Chr03	irgsp1_rep	CDS	4988731	4988779	.	+	0	Parent=Os03t0195800-01
Chr03	irgsp1_rep	CDS	4988874	4989081	.	+	2	Parent=Os03t0195800-01
Chr03	irgsp1_rep	CDS	4989202	4989376	.	+	1	Parent=Os03t0195800-01
Chr03	irgsp1_rep	CDS	4989483	4989548	.	+	0	Parent=Os03t0195800-01
Chr03	irgsp1_rep	CDS	4989652	4989765	.	+	0	Parent=Os03t0195800-01
Chr03	irgsp1_rep	CDS	4989868	4989984	.	+	0	Parent=Os03t0195800-01
Chr03	irgsp1_rep	CDS	4990091	4990217	.	+	0	Parent=Os03t0195800-01
Chr03	irgsp1_rep	CDS	4990328	4990614	.	+	2	Parent=Os03t0195800-01
Chr03	irgsp1_rep	CDS	4990711	4990901	.	+	0	Parent=Os03t0195800-01
Chr03	irgsp1_rep	CDS	4991439	4991524	.	+	1	Parent=Os03t0195800-01
Chr03	irgsp1_rep	CDS	4991619	4991695	.	+	2	Parent=Os03t0195800-01
Chr03	irgsp1_rep	CDS	4991832	4991975	.	+	0	Parent=Os03t0195800-01
Chr03	irgsp1_rep	three_prime_UTR	4991976	4992392	.	+	.	Parent=Os03t0195800-01
Chr03	irgsp1_rep	mRNA	4987947	4992864	.	-	.	ID=Os03t0195900-01;Name=Os03t0195900-01;Locus_id=Os03g0195900;Note=Hypothetical protein.;Transcript_evidence=AK102458 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033094B17;TENOR=Os03t0195900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	4992863	4992864	.	-	.	Parent=Os03t0195900-01
Chr03	irgsp1_rep	CDS	4992613	4992862	.	-	0	Parent=Os03t0195900-01
Chr03	irgsp1_rep	CDS	4991877	4991971	.	-	2	Parent=Os03t0195900-01
Chr03	irgsp1_rep	three_prime_UTR	4991830	4991876	.	-	.	Parent=Os03t0195900-01
Chr03	irgsp1_rep	three_prime_UTR	4989174	4989530	.	-	.	Parent=Os03t0195900-01
Chr03	irgsp1_rep	three_prime_UTR	4988803	4989093	.	-	.	Parent=Os03t0195900-01
Chr03	irgsp1_rep	three_prime_UTR	4988191	4988670	.	-	.	Parent=Os03t0195900-01
Chr03	irgsp1_rep	three_prime_UTR	4987947	4988105	.	-	.	Parent=Os03t0195900-01
Chr03	irgsp1_rep	mRNA	4987932	4992861	.	-	.	ID=Os03t0195900-02;Name=Os03t0195900-02;Locus_id=Os03g0195900;Note=Hypothetical protein.;Transcript_evidence=AK106552 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-108-G06;TENOR=Os03t0195900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	4992860	4992861	.	-	.	Parent=Os03t0195900-02
Chr03	irgsp1_rep	CDS	4992613	4992859	.	-	0	Parent=Os03t0195900-02
Chr03	irgsp1_rep	CDS	4991877	4991971	.	-	2	Parent=Os03t0195900-02
Chr03	irgsp1_rep	three_prime_UTR	4991830	4991876	.	-	.	Parent=Os03t0195900-02
Chr03	irgsp1_rep	three_prime_UTR	4989174	4989530	.	-	.	Parent=Os03t0195900-02
Chr03	irgsp1_rep	three_prime_UTR	4988803	4989093	.	-	.	Parent=Os03t0195900-02
Chr03	irgsp1_rep	three_prime_UTR	4987932	4988670	.	-	.	Parent=Os03t0195900-02
Chr03	irgsp1_rep	mRNA	4998396	5001806	.	+	.	ID=Os03t0196000-00;Name=Os03t0196000-00;Locus_id=Os03g0196000;CGSNL Gene Symbol=SULTR1%3B2;CGSNL Gene Name=SULPHATE TRANSPORTER 1%3B2;Oryzabase Gene Symbol Synonym(s)=OsSultr1%3B2%2C OsSul1%3B2;Oryzabase Gene Name Synonym(s)=sulphate transporter 1%3B2;Note=Similar to Sulfate transporter.;Transcript_evidence=ab initio prediction;ORF_evidence=A7YF68 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: sulfate transport (GO:0008272),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: secondary active sulfate transmembrane transporter activity (GO:0008271);InterPro=Sulphate anion transporter (IPR001902),Sulphate transporter/antisigma-factor antagonist STAS (IPR002645),Sulphate transporter (IPR011547);Oryzabase=9315;TENOR=Os03t0196000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	4998396	4998716	.	+	0	Parent=Os03t0196000-00
Chr03	irgsp1_rep	CDS	4998841	4998889	.	+	0	Parent=Os03t0196000-00
Chr03	irgsp1_rep	CDS	4999006	4999392	.	+	2	Parent=Os03t0196000-00
Chr03	irgsp1_rep	CDS	4999478	4999536	.	+	2	Parent=Os03t0196000-00
Chr03	irgsp1_rep	CDS	4999630	4999743	.	+	0	Parent=Os03t0196000-00
Chr03	irgsp1_rep	CDS	4999846	4999962	.	+	0	Parent=Os03t0196000-00
Chr03	irgsp1_rep	CDS	5000060	5000186	.	+	0	Parent=Os03t0196000-00
Chr03	irgsp1_rep	CDS	5000266	5000552	.	+	2	Parent=Os03t0196000-00
Chr03	irgsp1_rep	CDS	5000650	5000840	.	+	0	Parent=Os03t0196000-00
Chr03	irgsp1_rep	CDS	5001303	5001388	.	+	1	Parent=Os03t0196000-00
Chr03	irgsp1_rep	CDS	5001477	5001553	.	+	2	Parent=Os03t0196000-00
Chr03	irgsp1_rep	CDS	5001663	5001806	.	+	0	Parent=Os03t0196000-00
Chr03	irgsp1_rep	mRNA	5002407	5003175	.	-	.	ID=Os03t0196100-01;Name=Os03t0196100-01;Locus_id=Os03g0196100;Note=Hypothetical protein.;Transcript_evidence=AK107004 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-120-D03;TENOR=Os03t0196100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	5003175	5003175	.	-	.	Parent=Os03t0196100-01
Chr03	irgsp1_rep	CDS	5002701	5003174	.	-	0	Parent=Os03t0196100-01
Chr03	irgsp1_rep	three_prime_UTR	5002407	5002700	.	-	.	Parent=Os03t0196100-01
Chr03	irgsp1_rep	mRNA	5014119	5014675	.	-	.	ID=Os03t0196250-00;Name=Os03t0196250-00;Locus_id=Os03g0196250;Note=Conserved hypothetical protein.;Transcript_evidence=BT087419 (DDBJ);ORF_evidence=NP_001173300.1 (RefSeq);TENOR=Os03t0196250-00;KEGG=Os03t0196250-00
Chr03	irgsp1_rep	five_prime_UTR	5014644	5014675	.	-	.	Parent=Os03t0196250-00
Chr03	irgsp1_rep	CDS	5014227	5014643	.	-	0	Parent=Os03t0196250-00
Chr03	irgsp1_rep	three_prime_UTR	5014119	5014226	.	-	.	Parent=Os03t0196250-00
Chr03	irgsp1_rep	mRNA	5034168	5040417	.	+	.	ID=Os03t0196400-01;Name=Os03t0196400-01;Locus_id=Os03g0196400;Note=Similar to UPF0497 membrane protein 12.;Transcript_evidence=AK241434 (DDBJ%2C Best hit);ORF_evidence=C5WUP3 (UniProt);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup (IPR006459),Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);NIAS_FLcDNA=J065162C06;TENOR=Os03t0196400-01;KEGG=Os03t0196400-01
Chr03	irgsp1_rep	five_prime_UTR	5034168	5034313	.	+	.	Parent=Os03t0196400-01
Chr03	irgsp1_rep	CDS	5034314	5034564	.	+	0	Parent=Os03t0196400-01
Chr03	irgsp1_rep	CDS	5037547	5037676	.	+	1	Parent=Os03t0196400-01
Chr03	irgsp1_rep	CDS	5039728	5040003	.	+	0	Parent=Os03t0196400-01
Chr03	irgsp1_rep	three_prime_UTR	5040004	5040417	.	+	.	Parent=Os03t0196400-01
Chr03	irgsp1_rep	mRNA	5043401	5044077	.	-	.	ID=Os03t0196450-00;Name=Os03t0196450-00;Locus_id=Os03g0196450;Note=Similar to kelch motif family protein.;Transcript_evidence=BT041614 (DDBJ);ORF_evidence=NP_001149151.1 (RefSeq);TENOR=Os03t0196450-00;KEGG=Os03t0196450-00
Chr03	irgsp1_rep	CDS	5043526	5044077	.	-	0	Parent=Os03t0196450-00
Chr03	irgsp1_rep	three_prime_UTR	5043401	5043525	.	-	.	Parent=Os03t0196450-00
Chr03	irgsp1_rep	mRNA	5049125	5049901	.	-	.	ID=Os03t0196500-00;Name=Os03t0196500-00;Locus_id=Os03g0196500;Oryzabase Gene Symbol Synonym(s)=OsFbox131%2C Os_F0292;Oryzabase Gene Name Synonym(s)=F-box protein 131;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=EU956221 (DDBJ);ORF_evidence=NP_001150591.1 (RefSeq);InterPro=F-box domain%2C Skp2-like (IPR022364);Oryzabase=16922;TENOR=Os03t0196500-00;KEGG=Os03t0196500-00
Chr03	irgsp1_rep	five_prime_UTR	5049791	5049901	.	-	.	Parent=Os03t0196500-00
Chr03	irgsp1_rep	CDS	5049254	5049790	.	-	0	Parent=Os03t0196500-00
Chr03	irgsp1_rep	three_prime_UTR	5049125	5049253	.	-	.	Parent=Os03t0196500-00
Chr03	irgsp1_rep	mRNA	5063818	5065197	.	-	.	ID=Os03t0196600-01;Name=Os03t0196600-01;Locus_id=Os03g0196600;Note=Similar to satase isoform II.;Transcript_evidence=AK288017 (DDBJ%2C Best hit);ORF_evidence=NP_001105083.1 (RefSeq);GO=Biological Process: cysteine biosynthetic process from serine (GO:0006535),Cellular Component: cytoplasm (GO:0005737),Molecular Function: serine O-acetyltransferase activity (GO:0009001),Molecular Function: transferase activity (GO:0016740);InterPro=Bacterial transferase hexapeptide repeat (IPR001451),Serine O-acetyltransferase (IPR005881),Serine acetyltransferase%2C N-terminal (IPR010493),Trimeric LpxA-like (IPR011004),Hexapeptide transferase%2C conserved site (IPR018357);NIAS_FLcDNA=J075122K03;TENOR=Os03t0196600-01;KEGG=Os03t0196600-01 (EC:2.3.1.30)
Chr03	irgsp1_rep	five_prime_UTR	5065117	5065197	.	-	.	Parent=Os03t0196600-01
Chr03	irgsp1_rep	CDS	5064169	5065116	.	-	0	Parent=Os03t0196600-01
Chr03	irgsp1_rep	three_prime_UTR	5063818	5064168	.	-	.	Parent=Os03t0196600-01
Chr03	irgsp1_rep	mRNA	5078248	5081710	.	-	.	ID=Os03t0196800-01;Name=Os03t0196800-01;Locus_id=Os03g0196800;Oryzabase Gene Symbol Synonym(s)=RPS10%2C OsRPS10%2C rps10;Oryzabase Gene Name Synonym(s)=ribosomal protein S10%2C ribosomal protein small subunit 10;Note=Similar to Cyanelle 30S ribosomal protein S10.;Transcript_evidence=AK058535 (DDBJ%2C Best hit),AK104108 (DDBJ%2C Best hit);ORF_evidence=B6TFQ9 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: small ribosomal subunit (GO:0015935),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S10 (IPR001848),Ribosomal protein S10 subgroup (IPR005731),Ribosomal protein S10%2C conserved site (IPR018268);NIAS_FLcDNA=001-017-A12,006-202-F06;Oryzabase=22693;Expression=AK058535;TENOR=Os03t0196800-01;KEGG=Os03t0196800-01
Chr03	irgsp1_rep	five_prime_UTR	5081643	5081710	.	-	.	Parent=Os03t0196800-01
Chr03	irgsp1_rep	CDS	5081454	5081642	.	-	0	Parent=Os03t0196800-01
Chr03	irgsp1_rep	CDS	5081174	5081230	.	-	0	Parent=Os03t0196800-01
Chr03	irgsp1_rep	CDS	5078402	5078713	.	-	0	Parent=Os03t0196800-01
Chr03	irgsp1_rep	three_prime_UTR	5078248	5078401	.	-	.	Parent=Os03t0196800-01
Chr03	irgsp1_rep	mRNA	5082430	5083486	.	-	.	ID=Os03t0196900-01;Name=Os03t0196900-01;Locus_id=Os03g0196900;CGSNL Gene Symbol=DLN78;CGSNL Gene Name=DLN REPRESSOR 78;Oryzabase Gene Symbol Synonym(s)=OsDLN78;Oryzabase Gene Name Synonym(s)=DLN repressor 78%2C DLN motif protein 78;Note=Similar to TFIIB-related protein (Fragment).;Transcript_evidence=AK110751 (DDBJ%2C Best hit);ORF_evidence=Q93WQ2 (UniProt);GO=Biological Process: transcription initiation%2C DNA-dependent (GO:0006352),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: translational initiation (GO:0006413),Molecular Function: translation initiation factor activity (GO:0003743),Molecular Function: zinc ion binding (GO:0008270);InterPro=Transcription factor TFIIB (IPR000812),Transcription factor TFIIB%2C cyclin-related (IPR013150),Cyclin-like (IPR013763);NIAS_FLcDNA=002-170-G07;Oryzabase=23179;Expression=AK110751;TENOR=Os03t0196900-01;KEGG=Os03t0196900-01
Chr03	irgsp1_rep	five_prime_UTR	5083486	5083486	.	-	.	Parent=Os03t0196900-01
Chr03	irgsp1_rep	CDS	5083390	5083485	.	-	0	Parent=Os03t0196900-01
Chr03	irgsp1_rep	CDS	5082517	5083308	.	-	0	Parent=Os03t0196900-01
Chr03	irgsp1_rep	three_prime_UTR	5082430	5082516	.	-	.	Parent=Os03t0196900-01
Chr03	irgsp1_rep	mRNA	5085664	5090353	.	-	.	ID=Os03t0197000-01;Name=Os03t0197000-01;Locus_id=Os03g0197000;Note=Di-trans-poly-cis-decaprenylcistransferase-like domain containing protein.;Transcript_evidence=AK071163 (DDBJ%2C Best hit);ORF_evidence=Q10QG7 (UniProt);GO=Molecular Function: transferase activity%2C transferring alkyl or aryl (other than methyl) groups (GO:0016765);InterPro=Di-trans-poly-cis-decaprenylcistransferase-like (IPR001441);NIAS_FLcDNA=J023079A07;Expression=AK071163;TENOR=Os03t0197000-01;KEGG=Os03t0197000-01
Chr03	irgsp1_rep	five_prime_UTR	5090143	5090353	.	-	.	Parent=Os03t0197000-01
Chr03	irgsp1_rep	CDS	5090134	5090142	.	-	0	Parent=Os03t0197000-01
Chr03	irgsp1_rep	CDS	5088075	5088363	.	-	0	Parent=Os03t0197000-01
Chr03	irgsp1_rep	CDS	5087696	5087763	.	-	2	Parent=Os03t0197000-01
Chr03	irgsp1_rep	CDS	5087401	5087605	.	-	0	Parent=Os03t0197000-01
Chr03	irgsp1_rep	CDS	5087193	5087289	.	-	2	Parent=Os03t0197000-01
Chr03	irgsp1_rep	CDS	5086353	5086435	.	-	1	Parent=Os03t0197000-01
Chr03	irgsp1_rep	CDS	5085930	5085937	.	-	2	Parent=Os03t0197000-01
Chr03	irgsp1_rep	three_prime_UTR	5085664	5085929	.	-	.	Parent=Os03t0197000-01
Chr03	irgsp1_rep	mRNA	5088416	5089103	.	-	.	ID=Os03t0197050-00;Name=Os03t0197050-00;Locus_id=Os03g0197050;Note=Non-protein coding transcript.;Transcript_evidence=CT835219 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os03t0197050-00
Chr03	irgsp1_rep	exon	5088416	5089103	.	-	.	Parent=Os03t0197050-00
Chr03	irgsp1_rep	mRNA	5098241	5100592	.	+	.	ID=Os03t0197100-01;Name=Os03t0197100-01;Locus_id=Os03g0197100;Note=Similar to Sugar transporter protein.;Transcript_evidence=AK099273 (DDBJ%2C Best hit),AK070417 (DDBJ%2C Best hit),AK103915 (DDBJ%2C Best hit);ORF_evidence=B6TSL9 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J023058J16,J023048F11,001-013-A02;TENOR=Os03t0197100-01
Chr03	irgsp1_rep	five_prime_UTR	5098241	5098463	.	+	.	Parent=Os03t0197100-01
Chr03	irgsp1_rep	CDS	5098464	5098581	.	+	0	Parent=Os03t0197100-01
Chr03	irgsp1_rep	CDS	5098681	5100116	.	+	2	Parent=Os03t0197100-01
Chr03	irgsp1_rep	three_prime_UTR	5100117	5100592	.	+	.	Parent=Os03t0197100-01
Chr03	irgsp1_rep	mRNA	5098479	5100036	.	-	.	ID=Os03t0197125-00;Name=Os03t0197125-00;Locus_id=Os03g0197125;Note=Hypothetical gene.;Transcript_evidence=tplb0043f10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0197125-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	5099735	5100036	.	-	.	Parent=Os03t0197125-00
Chr03	irgsp1_rep	CDS	5099057	5099734	.	-	0	Parent=Os03t0197125-00
Chr03	irgsp1_rep	three_prime_UTR	5098678	5099056	.	-	.	Parent=Os03t0197125-00
Chr03	irgsp1_rep	three_prime_UTR	5098479	5098579	.	-	.	Parent=Os03t0197125-00
Chr03	irgsp1_rep	mRNA	5112590	5113777	.	-	.	ID=Os03t0197175-00;Name=Os03t0197175-00;Locus_id=Os03g0197175;Note=Hypothetical gene.;Transcript_evidence=BT085041 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0197175-00;KEGG=Os03t0197175-00
Chr03	irgsp1_rep	five_prime_UTR	5113776	5113777	.	-	.	Parent=Os03t0197175-00
Chr03	irgsp1_rep	CDS	5112849	5113775	.	-	0	Parent=Os03t0197175-00
Chr03	irgsp1_rep	three_prime_UTR	5112590	5112848	.	-	.	Parent=Os03t0197175-00
Chr03	irgsp1_rep	mRNA	5112964	5114038	.	+	.	ID=Os03t0197200-01;Name=Os03t0197200-01;Locus_id=Os03g0197200;Note=Similar to Sorbitol transporter.;Transcript_evidence=AK073216 (DDBJ%2C Best hit);ORF_evidence=Q10QG4 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J033004D04;Expression=AK073216;TENOR=Os03t0197200-01;KEGG=Os03t0197200-01
Chr03	irgsp1_rep	five_prime_UTR	5112964	5112965	.	+	.	Parent=Os03t0197200-01
Chr03	irgsp1_rep	CDS	5112966	5113853	.	+	0	Parent=Os03t0197200-01
Chr03	irgsp1_rep	three_prime_UTR	5113854	5114038	.	+	.	Parent=Os03t0197200-01
Chr03	irgsp1_rep	mRNA	5116435	5119048	.	+	.	ID=Os03t0197300-01;Name=Os03t0197300-01;Locus_id=Os03g0197300;Oryzabase Gene Name Synonym(s)=cupin domain containing protein%2C cupin;Note=Similar to Cupin family protein%2C expressed.;Transcript_evidence=AK102651 (DDBJ%2C Best hit);ORF_evidence=Q10QG3 (UniProt);GO=Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710);NIAS_FLcDNA=J033101B21;Oryzabase=22713;TENOR=Os03t0197300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	5116435	5116435	.	+	.	Parent=Os03t0197300-01
Chr03	irgsp1_rep	CDS	5116436	5116805	.	+	0	Parent=Os03t0197300-01
Chr03	irgsp1_rep	CDS	5116951	5117141	.	+	2	Parent=Os03t0197300-01
Chr03	irgsp1_rep	CDS	5117295	5117375	.	+	0	Parent=Os03t0197300-01
Chr03	irgsp1_rep	CDS	5117474	5117821	.	+	0	Parent=Os03t0197300-01
Chr03	irgsp1_rep	CDS	5117911	5118795	.	+	0	Parent=Os03t0197300-01
Chr03	irgsp1_rep	three_prime_UTR	5118796	5119048	.	+	.	Parent=Os03t0197300-01
Chr03	irgsp1_rep	mRNA	5119305	5124613	.	-	.	ID=Os03t0197400-01;Name=Os03t0197400-01;Locus_id=Os03g0197400;Note=Similar to COP9 signalosome complex subunit 4 (Signalosome subunit 4) (Constitutive photomorphogenesis protein 8) (FUSCA protein 4) (FUSCA4) (AtS4).;Transcript_evidence=AK071413 (DDBJ%2C Best hit);ORF_evidence=B4FCA4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Proteasome component (PCI) domain (IPR000717),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=J023092I05;TENOR=Os03t0197400-01
Chr03	irgsp1_rep	five_prime_UTR	5124475	5124613	.	-	.	Parent=Os03t0197400-01
Chr03	irgsp1_rep	CDS	5124339	5124474	.	-	0	Parent=Os03t0197400-01
Chr03	irgsp1_rep	CDS	5124094	5124245	.	-	2	Parent=Os03t0197400-01
Chr03	irgsp1_rep	CDS	5122586	5122689	.	-	0	Parent=Os03t0197400-01
Chr03	irgsp1_rep	CDS	5122438	5122498	.	-	1	Parent=Os03t0197400-01
Chr03	irgsp1_rep	CDS	5122271	5122363	.	-	0	Parent=Os03t0197400-01
Chr03	irgsp1_rep	CDS	5122081	5122181	.	-	0	Parent=Os03t0197400-01
Chr03	irgsp1_rep	CDS	5121711	5121819	.	-	1	Parent=Os03t0197400-01
Chr03	irgsp1_rep	CDS	5120960	5121004	.	-	0	Parent=Os03t0197400-01
Chr03	irgsp1_rep	CDS	5120806	5120874	.	-	0	Parent=Os03t0197400-01
Chr03	irgsp1_rep	CDS	5120632	5120723	.	-	0	Parent=Os03t0197400-01
Chr03	irgsp1_rep	CDS	5120514	5120556	.	-	1	Parent=Os03t0197400-01
Chr03	irgsp1_rep	CDS	5120127	5120186	.	-	0	Parent=Os03t0197400-01
Chr03	irgsp1_rep	CDS	5119909	5119968	.	-	0	Parent=Os03t0197400-01
Chr03	irgsp1_rep	CDS	5119533	5119607	.	-	0	Parent=Os03t0197400-01
Chr03	irgsp1_rep	three_prime_UTR	5119305	5119532	.	-	.	Parent=Os03t0197400-01
Chr03	irgsp1_rep	mRNA	5119308	5124569	.	-	.	ID=Os03t0197400-02;Name=Os03t0197400-02;Locus_id=Os03g0197400;Note=Similar to COP9 signalosome complex subunit 4 (Signalosome subunit 4) (Constitutive photomorphogenesis protein 8) (FUSCA protein 4) (FUSCA4) (AtS4).;Transcript_evidence=AK104905 (DDBJ%2C Best hit);ORF_evidence=B4FCA4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Proteasome component (PCI) domain (IPR000717),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=001-046-G04;TENOR=Os03t0197400-02
Chr03	irgsp1_rep	five_prime_UTR	5124475	5124569	.	-	.	Parent=Os03t0197400-02
Chr03	irgsp1_rep	CDS	5124339	5124474	.	-	0	Parent=Os03t0197400-02
Chr03	irgsp1_rep	CDS	5124094	5124245	.	-	2	Parent=Os03t0197400-02
Chr03	irgsp1_rep	CDS	5122586	5122689	.	-	0	Parent=Os03t0197400-02
Chr03	irgsp1_rep	CDS	5122438	5122498	.	-	1	Parent=Os03t0197400-02
Chr03	irgsp1_rep	CDS	5122271	5122363	.	-	0	Parent=Os03t0197400-02
Chr03	irgsp1_rep	CDS	5122081	5122181	.	-	0	Parent=Os03t0197400-02
Chr03	irgsp1_rep	CDS	5121711	5121819	.	-	1	Parent=Os03t0197400-02
Chr03	irgsp1_rep	CDS	5120960	5121004	.	-	0	Parent=Os03t0197400-02
Chr03	irgsp1_rep	CDS	5120806	5120874	.	-	0	Parent=Os03t0197400-02
Chr03	irgsp1_rep	CDS	5120632	5120723	.	-	0	Parent=Os03t0197400-02
Chr03	irgsp1_rep	CDS	5120514	5120556	.	-	1	Parent=Os03t0197400-02
Chr03	irgsp1_rep	CDS	5120127	5120186	.	-	0	Parent=Os03t0197400-02
Chr03	irgsp1_rep	CDS	5119909	5119968	.	-	0	Parent=Os03t0197400-02
Chr03	irgsp1_rep	CDS	5119533	5119607	.	-	0	Parent=Os03t0197400-02
Chr03	irgsp1_rep	three_prime_UTR	5119308	5119532	.	-	.	Parent=Os03t0197400-02
Chr03	irgsp1_rep	mRNA	5134409	5137441	.	+	.	ID=Os03t0197800-00;Name=Os03t0197800-00;Locus_id=Os03g0197800;CGSNL Gene Symbol=IDD1;CGSNL Gene Name=INDETERMINATE DOMAIN 1;Oryzabase Gene Symbol Synonym(s)=OsIDD1;Oryzabase Gene Name Synonym(s)=indeterminate domain 1;Note=Similar to Zinc finger%2C C2H2 type family protein%2C expressed.;Transcript_evidence=BT054618 (DDBJ);ORF_evidence=Q10QG1 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880),Zinc finger%2C double-stranded RNA binding (IPR022755);Oryzabase=13149;TENOR=Os03t0197800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	5134409	5134573	.	+	.	Parent=Os03t0197800-00
Chr03	irgsp1_rep	CDS	5134574	5134700	.	+	0	Parent=Os03t0197800-00
Chr03	irgsp1_rep	CDS	5134814	5135210	.	+	2	Parent=Os03t0197800-00
Chr03	irgsp1_rep	CDS	5135297	5135523	.	+	1	Parent=Os03t0197800-00
Chr03	irgsp1_rep	CDS	5136172	5137079	.	+	2	Parent=Os03t0197800-00
Chr03	irgsp1_rep	three_prime_UTR	5137080	5137441	.	+	.	Parent=Os03t0197800-00
Chr03	irgsp1_rep	mRNA	5134811	5135106	.	-	.	ID=Os03t0197825-00;Name=Os03t0197825-00;Locus_id=Os03g0197825;Note=Hypothetical protein.;Transcript_evidence=BT086922 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0197825-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	5134811	5135106	.	-	0	Parent=Os03t0197825-00
Chr03	irgsp1_rep	mRNA	5135959	5137366	.	-	.	ID=Os03t0197850-00;Name=Os03t0197850-00;Locus_id=Os03g0197850;Note=Hypothetical gene.;Transcript_evidence=EU945312 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0197850-00;KEGG=Os03t0197850-00
Chr03	irgsp1_rep	five_prime_UTR	5136402	5137366	.	-	.	Parent=Os03t0197850-00
Chr03	irgsp1_rep	CDS	5136126	5136401	.	-	0	Parent=Os03t0197850-00
Chr03	irgsp1_rep	three_prime_UTR	5135959	5136125	.	-	.	Parent=Os03t0197850-00
Chr03	irgsp1_rep	mRNA	5143551	5143598	.	+	.	ID=Os03t0197875-00;Name=Os03t0197875-00;Locus_id=Os03g0197875;Note=Non-protein coding transcript.;Transcript_evidence=X02683 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0197875-00
Chr03	irgsp1_rep	exon	5143551	5143598	.	+	.	Parent=Os03t0197875-00
Chr03	irgsp1_rep	mRNA	5150966	5152038	.	-	.	ID=Os03t0197900-01;Name=Os03t0197900-01;Locus_id=Os03g0197900;Oryzabase Gene Symbol Synonym(s)=OsOFP8%2C OsOFP12;Oryzabase Gene Name Synonym(s)=OVATE family protein 8%2C ovate family protein 12%2C OVATE-domain containing protein 12;Note=Protein of unknown function DUF623%2C plant domain containing protein.;Transcript_evidence=AK111079 (DDBJ%2C Best hit);ORF_evidence=A2XDK0 (UniProt);InterPro=Domain of unknown function DUF623 (IPR006458);NIAS_FLcDNA=002-175-F02;Oryzabase=18304;Expression=AK111079;TENOR=Os03t0197900-01;KEGG=Os03t0197900-01
Chr03	irgsp1_rep	five_prime_UTR	5151951	5152038	.	-	.	Parent=Os03t0197900-01
Chr03	irgsp1_rep	CDS	5151123	5151950	.	-	0	Parent=Os03t0197900-01
Chr03	irgsp1_rep	three_prime_UTR	5150966	5151122	.	-	.	Parent=Os03t0197900-01
Chr03	irgsp1_rep	mRNA	5159637	5160262	.	-	.	ID=Os03t0198200-01;Name=Os03t0198200-01;Locus_id=Os03g0198200;Note=Hypothetical protein.;Transcript_evidence=AK071600 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023105E08;Expression=AK071600;TENOR=Os03t0198200-01;KEGG=Os03t0198200-01
Chr03	irgsp1_rep	five_prime_UTR	5160042	5160262	.	-	.	Parent=Os03t0198200-01
Chr03	irgsp1_rep	CDS	5159772	5160041	.	-	0	Parent=Os03t0198200-01
Chr03	irgsp1_rep	three_prime_UTR	5159637	5159771	.	-	.	Parent=Os03t0198200-01
Chr03	irgsp1_rep	mRNA	5161642	5166571	.	+	.	ID=Os03t0198300-01;Name=Os03t0198300-01;Locus_id=Os03g0198300;Oryzabase Gene Symbol Synonym(s)=OsDjC25;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C25;Note=Heat shock protein DnaJ%2C N-terminal domain containing protein.;Transcript_evidence=AK099437 (DDBJ%2C Best hit);ORF_evidence=B8AQ37 (UniProt);GO=Molecular Function: heat shock protein binding (GO:0031072);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623);NIAS_FLcDNA=J013020D08;Oryzabase=12182;Expression=AK099437;TENOR=Os03t0198300-01;KEGG=Os03t0198300-01
Chr03	irgsp1_rep	five_prime_UTR	5161642	5161735	.	+	.	Parent=Os03t0198300-01
Chr03	irgsp1_rep	CDS	5161736	5162070	.	+	0	Parent=Os03t0198300-01
Chr03	irgsp1_rep	CDS	5162522	5163153	.	+	1	Parent=Os03t0198300-01
Chr03	irgsp1_rep	CDS	5163438	5163745	.	+	2	Parent=Os03t0198300-01
Chr03	irgsp1_rep	CDS	5163898	5164006	.	+	0	Parent=Os03t0198300-01
Chr03	irgsp1_rep	CDS	5164373	5164458	.	+	2	Parent=Os03t0198300-01
Chr03	irgsp1_rep	CDS	5164675	5164734	.	+	0	Parent=Os03t0198300-01
Chr03	irgsp1_rep	CDS	5164831	5164908	.	+	0	Parent=Os03t0198300-01
Chr03	irgsp1_rep	CDS	5165666	5165842	.	+	0	Parent=Os03t0198300-01
Chr03	irgsp1_rep	CDS	5166244	5166282	.	+	0	Parent=Os03t0198300-01
Chr03	irgsp1_rep	three_prime_UTR	5166283	5166571	.	+	.	Parent=Os03t0198300-01
Chr03	irgsp1_rep	mRNA	5161669	5166608	.	+	.	ID=Os03t0198300-02;Name=Os03t0198300-02;Locus_id=Os03g0198300;Oryzabase Gene Symbol Synonym(s)=OsDjC25;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C25;Note=Heat shock protein DnaJ%2C N-terminal domain containing protein.;Transcript_evidence=AK071995 (DDBJ%2C Best hit);ORF_evidence=B8AQ37 (UniProt);GO=Molecular Function: heat shock protein binding (GO:0031072);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623);NIAS_FLcDNA=J013089P22;Oryzabase=12182;Expression=AK071995;TENOR=Os03t0198300-02;KEGG=Os03t0198300-02
Chr03	irgsp1_rep	five_prime_UTR	5161669	5161735	.	+	.	Parent=Os03t0198300-02
Chr03	irgsp1_rep	CDS	5161736	5162070	.	+	0	Parent=Os03t0198300-02
Chr03	irgsp1_rep	CDS	5162522	5163153	.	+	1	Parent=Os03t0198300-02
Chr03	irgsp1_rep	CDS	5163438	5163745	.	+	2	Parent=Os03t0198300-02
Chr03	irgsp1_rep	CDS	5163898	5164006	.	+	0	Parent=Os03t0198300-02
Chr03	irgsp1_rep	CDS	5164373	5164458	.	+	2	Parent=Os03t0198300-02
Chr03	irgsp1_rep	CDS	5164675	5164734	.	+	0	Parent=Os03t0198300-02
Chr03	irgsp1_rep	CDS	5164831	5164908	.	+	0	Parent=Os03t0198300-02
Chr03	irgsp1_rep	CDS	5165666	5165842	.	+	0	Parent=Os03t0198300-02
Chr03	irgsp1_rep	CDS	5166244	5166282	.	+	0	Parent=Os03t0198300-02
Chr03	irgsp1_rep	three_prime_UTR	5166283	5166608	.	+	.	Parent=Os03t0198300-02
Chr03	irgsp1_rep	mRNA	5167307	5170694	.	+	.	ID=Os03t0198400-01;Name=Os03t0198400-01;Locus_id=Os03g0198400;Note=Similar to Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS) (Fragment).;Transcript_evidence=AK103101 (DDBJ%2C Best hit),AK059522 (DDBJ%2C Best hit);ORF_evidence=B4FRC4 (UniProt);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: seryl-tRNA aminoacylation (GO:0006434),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: serine-tRNA ligase activity (GO:0004828),Molecular Function: ATP binding (GO:0005524);InterPro=Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved domain (IPR002314),Seryl-tRNA synthetase%2C class IIa (IPR002317),Aminoacyl-tRNA synthetase%2C class II (IPR006195),tRNA-binding arm (IPR010978),Seryl-tRNA synthetase%2C class IIa%2C N-terminal (IPR015866);NIAS_FLcDNA=J033118N18,001-029-C08;Expression=AK103101;TENOR=Os03t0198400-01;KEGG=Os03t0198400-01 (EC:6.1.1.11)
Chr03	irgsp1_rep	five_prime_UTR	5167307	5167390	.	+	.	Parent=Os03t0198400-01
Chr03	irgsp1_rep	CDS	5167391	5167523	.	+	0	Parent=Os03t0198400-01
Chr03	irgsp1_rep	CDS	5167611	5167681	.	+	2	Parent=Os03t0198400-01
Chr03	irgsp1_rep	CDS	5167769	5167930	.	+	0	Parent=Os03t0198400-01
Chr03	irgsp1_rep	CDS	5168288	5168393	.	+	0	Parent=Os03t0198400-01
Chr03	irgsp1_rep	CDS	5168887	5169078	.	+	2	Parent=Os03t0198400-01
Chr03	irgsp1_rep	CDS	5169343	5169448	.	+	2	Parent=Os03t0198400-01
Chr03	irgsp1_rep	CDS	5169529	5169712	.	+	1	Parent=Os03t0198400-01
Chr03	irgsp1_rep	CDS	5169806	5169985	.	+	0	Parent=Os03t0198400-01
Chr03	irgsp1_rep	CDS	5170069	5170272	.	+	0	Parent=Os03t0198400-01
Chr03	irgsp1_rep	three_prime_UTR	5170273	5170694	.	+	.	Parent=Os03t0198400-01
Chr03	irgsp1_rep	mRNA	5167339	5170273	.	-	.	ID=Os03t0198433-00;Name=Os03t0198433-00;Locus_id=Os03g0198433;Note=Non-protein coding transcript.;Transcript_evidence=tplb0033a05 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os03t0198433-00
Chr03	irgsp1_rep	exon	5170079	5170273	.	-	.	Parent=Os03t0198433-00
Chr03	irgsp1_rep	exon	5169804	5169996	.	-	.	Parent=Os03t0198433-00
Chr03	irgsp1_rep	exon	5169516	5169702	.	-	.	Parent=Os03t0198433-00
Chr03	irgsp1_rep	exon	5169343	5169436	.	-	.	Parent=Os03t0198433-00
Chr03	irgsp1_rep	exon	5168885	5169079	.	-	.	Parent=Os03t0198433-00
Chr03	irgsp1_rep	exon	5168286	5168391	.	-	.	Parent=Os03t0198433-00
Chr03	irgsp1_rep	exon	5167768	5167928	.	-	.	Parent=Os03t0198433-00
Chr03	irgsp1_rep	exon	5167611	5167680	.	-	.	Parent=Os03t0198433-00
Chr03	irgsp1_rep	exon	5167339	5167523	.	-	.	Parent=Os03t0198433-00
Chr03	irgsp1_rep	mRNA	5175138	5179203	.	+	.	ID=Os03t0198500-01;Name=Os03t0198500-01;Locus_id=Os03g0198500;Note=Protein of unknown function DUF862%2C eukaryotic domain containing protein.;Transcript_evidence=AK071509 (DDBJ%2C Best hit);ORF_evidence=Q9FZF0 (UniProt);InterPro=Domain of unknown function DUF862%2C eukaryotic (IPR008580);NIAS_FLcDNA=J023097C09;Expression=AK071509;TENOR=Os03t0198500-01;KEGG=Os03t0198500-01
Chr03	irgsp1_rep	five_prime_UTR	5175138	5175384	.	+	.	Parent=Os03t0198500-01
Chr03	irgsp1_rep	five_prime_UTR	5176579	5176582	.	+	.	Parent=Os03t0198500-01
Chr03	irgsp1_rep	CDS	5176583	5176796	.	+	0	Parent=Os03t0198500-01
Chr03	irgsp1_rep	CDS	5177774	5178061	.	+	2	Parent=Os03t0198500-01
Chr03	irgsp1_rep	CDS	5178663	5178904	.	+	2	Parent=Os03t0198500-01
Chr03	irgsp1_rep	three_prime_UTR	5178905	5179203	.	+	.	Parent=Os03t0198500-01
Chr03	irgsp1_rep	mRNA	5175186	5179221	.	+	.	ID=Os03t0198500-02;Name=Os03t0198500-02;Locus_id=Os03g0198500;Note=Protein of unknown function DUF862%2C eukaryotic domain containing protein.;Transcript_evidence=AK104430 (DDBJ%2C Best hit);ORF_evidence=Q9FZF0 (UniProt);InterPro=Domain of unknown function DUF862%2C eukaryotic (IPR008580);NIAS_FLcDNA=006-206-H02;Expression=AK104430;TENOR=Os03t0198500-02;KEGG=Os03t0198500-02
Chr03	irgsp1_rep	five_prime_UTR	5175186	5175384	.	+	.	Parent=Os03t0198500-02
Chr03	irgsp1_rep	five_prime_UTR	5176579	5176582	.	+	.	Parent=Os03t0198500-02
Chr03	irgsp1_rep	CDS	5176583	5176796	.	+	0	Parent=Os03t0198500-02
Chr03	irgsp1_rep	CDS	5177774	5178061	.	+	2	Parent=Os03t0198500-02
Chr03	irgsp1_rep	CDS	5178663	5178904	.	+	2	Parent=Os03t0198500-02
Chr03	irgsp1_rep	three_prime_UTR	5178905	5179221	.	+	.	Parent=Os03t0198500-02
Chr03	irgsp1_rep	mRNA	5175264	5179192	.	+	.	ID=Os03t0198500-03;Name=Os03t0198500-03;Locus_id=Os03g0198500;Note=Protein of unknown function DUF862%2C eukaryotic domain containing protein.;Transcript_evidence=AK060325 (DDBJ%2C Best hit);ORF_evidence=Q9FZF0 (UniProt);InterPro=Domain of unknown function DUF862%2C eukaryotic (IPR008580);NIAS_FLcDNA=001-007-H08;Expression=AK060325;TENOR=Os03t0198500-03;KEGG=Os03t0198500-03
Chr03	irgsp1_rep	five_prime_UTR	5175264	5175384	.	+	.	Parent=Os03t0198500-03
Chr03	irgsp1_rep	five_prime_UTR	5176579	5176582	.	+	.	Parent=Os03t0198500-03
Chr03	irgsp1_rep	CDS	5176583	5176796	.	+	0	Parent=Os03t0198500-03
Chr03	irgsp1_rep	CDS	5177774	5178061	.	+	2	Parent=Os03t0198500-03
Chr03	irgsp1_rep	CDS	5178663	5178904	.	+	2	Parent=Os03t0198500-03
Chr03	irgsp1_rep	three_prime_UTR	5178905	5179192	.	+	.	Parent=Os03t0198500-03
Chr03	irgsp1_rep	mRNA	5180779	5182185	.	-	.	ID=Os03t0198600-01;Name=Os03t0198600-01;Locus_id=Os03g0198600;RAP-DB Gene Symbol Synonym(s)=HOX12%2C Oshox12%2C OsHox12;RAP-DB Gene Name Synonym(s)=HOMEOBOX GENE 12%2C rice homeobox gene 12%2C Homeobox-leucine zipper protein HOX12%2C Homeodomain transcription factor HOX12%2C HD-ZIP protein HOX12;CGSNL Gene Symbol=HOX12;CGSNL Gene Name=HOMEOBOX GENE 12;Oryzabase Gene Symbol Synonym(s)=Oshox12%2C OsHox12;Oryzabase Gene Name Synonym(s)=rice homeobox gene 12%2C Homeobox-leucine zipper protein HOX12%2C Homeodomain transcription factor HOX12%2C HD-ZIP protein HOX12;Note=Homeodomain-leucine zipper transcription factor%2C Regulation of panicle exsertion;Transcript_evidence=AK073446;ORF_evidence=Q10QF2;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeodomain-like (IPR009057),Homeobox domain (IPR001356),Helix-turn-helix motif (IPR000047),Homeobox%2C conserved site (IPR017970);NIAS_FLcDNA=J033043C24;Manual Curation=April 19%2C 2016;Literature_PMID=26977084,17999151;Oryzabase=8448;Expression=AK073446;TENOR=Os03t0198600-01;KEGG=Os03t0198600-01
Chr03	irgsp1_rep	five_prime_UTR	5181975	5182185	.	-	.	Parent=Os03t0198600-01
Chr03	irgsp1_rep	CDS	5181893	5181974	.	-	0	Parent=Os03t0198600-01
Chr03	irgsp1_rep	CDS	5181430	5181773	.	-	2	Parent=Os03t0198600-01
Chr03	irgsp1_rep	CDS	5181015	5181308	.	-	0	Parent=Os03t0198600-01
Chr03	irgsp1_rep	three_prime_UTR	5180779	5181014	.	-	.	Parent=Os03t0198600-01
Chr03	irgsp1_rep	mRNA	5202662	5206428	.	-	.	ID=Os03t0198900-01;Name=Os03t0198900-01;Locus_id=Os03g0198900;Oryzabase Gene Symbol Synonym(s)=TagI;Note=Hypothetical conserved gene.;Transcript_evidence=AK109740 (DDBJ%2C Best hit);ORF_evidence=B9F5Q9 (UniProt);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Biological Process: methylation (GO:0032259),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: methyltransferase activity (GO:0008168);InterPro=DNA methylase%2C N-6 adenine-specific%2C conserved site (IPR002052),MT-A70 (IPR007757);NIAS_FLcDNA=002-146-D11;Oryzabase=21273;Expression=AK109740;TENOR=Os03t0198900-01;KEGG=Os03t0198900-01
Chr03	irgsp1_rep	five_prime_UTR	5206414	5206428	.	-	.	Parent=Os03t0198900-01
Chr03	irgsp1_rep	CDS	5206108	5206413	.	-	0	Parent=Os03t0198900-01
Chr03	irgsp1_rep	CDS	5205522	5205738	.	-	0	Parent=Os03t0198900-01
Chr03	irgsp1_rep	CDS	5205301	5205425	.	-	2	Parent=Os03t0198900-01
Chr03	irgsp1_rep	CDS	5205164	5205197	.	-	0	Parent=Os03t0198900-01
Chr03	irgsp1_rep	CDS	5204957	5205032	.	-	2	Parent=Os03t0198900-01
Chr03	irgsp1_rep	CDS	5204091	5204268	.	-	1	Parent=Os03t0198900-01
Chr03	irgsp1_rep	CDS	5203878	5203964	.	-	0	Parent=Os03t0198900-01
Chr03	irgsp1_rep	CDS	5203673	5203772	.	-	0	Parent=Os03t0198900-01
Chr03	irgsp1_rep	CDS	5203364	5203524	.	-	2	Parent=Os03t0198900-01
Chr03	irgsp1_rep	three_prime_UTR	5203289	5203363	.	-	.	Parent=Os03t0198900-01
Chr03	irgsp1_rep	three_prime_UTR	5202662	5203151	.	-	.	Parent=Os03t0198900-01
Chr03	irgsp1_rep	mRNA	5200218	5202852	.	-	.	ID=Os03t0198900-02;Name=Os03t0198900-02;Locus_id=Os03g0198900;Oryzabase Gene Symbol Synonym(s)=TagI;Note=Methyladenine glycosylase domain containing protein.;Transcript_evidence=AK063273 (DDBJ%2C Best hit);ORF_evidence=NP_565100.1 (RefSeq);GO=Biological Process: DNA repair (GO:0006281),Biological Process: base-excision repair (GO:0006284),Molecular Function: catalytic activity (GO:0003824),Molecular Function: DNA-3-methyladenine glycosylase I activity (GO:0008725);InterPro=Methyladenine glycosylase (IPR005019),DNA glycosylase (IPR011257);NIAS_FLcDNA=001-113-C01;Oryzabase=21273;Expression=AK063273;TENOR=Os03t0198900-02;KEGG=Os03t0198900-02 (EC:3.2.2.20)
Chr03	irgsp1_rep	five_prime_UTR	5202558	5202852	.	-	.	Parent=Os03t0198900-02
Chr03	irgsp1_rep	CDS	5201936	5202557	.	-	0	Parent=Os03t0198900-02
Chr03	irgsp1_rep	CDS	5201418	5201559	.	-	2	Parent=Os03t0198900-02
Chr03	irgsp1_rep	CDS	5201189	5201333	.	-	1	Parent=Os03t0198900-02
Chr03	irgsp1_rep	CDS	5200523	5200867	.	-	0	Parent=Os03t0198900-02
Chr03	irgsp1_rep	three_prime_UTR	5200218	5200522	.	-	.	Parent=Os03t0198900-02
Chr03	irgsp1_rep	mRNA	5206265	5211363	.	+	.	ID=Os03t0199000-01;Name=Os03t0199000-01;Locus_id=Os03g0199000;Note=UAA transporter domain containing protein.;Transcript_evidence=AK072933 (DDBJ%2C Best hit);ORF_evidence=B8AQ42 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085);InterPro=UAA transporter (IPR013657);NIAS_FLcDNA=J023145E02;TENOR=Os03t0199000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	5206265	5206589	.	+	.	Parent=Os03t0199000-01
Chr03	irgsp1_rep	CDS	5206590	5206966	.	+	0	Parent=Os03t0199000-01
Chr03	irgsp1_rep	CDS	5208026	5208171	.	+	1	Parent=Os03t0199000-01
Chr03	irgsp1_rep	CDS	5208502	5208539	.	+	2	Parent=Os03t0199000-01
Chr03	irgsp1_rep	CDS	5208890	5209005	.	+	0	Parent=Os03t0199000-01
Chr03	irgsp1_rep	CDS	5209180	5209279	.	+	1	Parent=Os03t0199000-01
Chr03	irgsp1_rep	CDS	5209356	5209414	.	+	0	Parent=Os03t0199000-01
Chr03	irgsp1_rep	CDS	5209585	5209635	.	+	1	Parent=Os03t0199000-01
Chr03	irgsp1_rep	CDS	5209827	5209869	.	+	1	Parent=Os03t0199000-01
Chr03	irgsp1_rep	three_prime_UTR	5209870	5209950	.	+	.	Parent=Os03t0199000-01
Chr03	irgsp1_rep	three_prime_UTR	5210459	5210584	.	+	.	Parent=Os03t0199000-01
Chr03	irgsp1_rep	three_prime_UTR	5210796	5211363	.	+	.	Parent=Os03t0199000-01
Chr03	irgsp1_rep	mRNA	5206587	5211073	.	-	.	ID=Os03t0199050-00;Name=Os03t0199050-00;Locus_id=Os03g0199050;Note=Hypothetical protein.;Transcript_evidence=tplb0042h03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0199050-00
Chr03	irgsp1_rep	five_prime_UTR	5210777	5211073	.	-	.	Parent=Os03t0199050-00
Chr03	irgsp1_rep	five_prime_UTR	5210457	5210565	.	-	.	Parent=Os03t0199050-00
Chr03	irgsp1_rep	five_prime_UTR	5209799	5209948	.	-	.	Parent=Os03t0199050-00
Chr03	irgsp1_rep	five_prime_UTR	5209190	5209346	.	-	.	Parent=Os03t0199050-00
Chr03	irgsp1_rep	five_prime_UTR	5208863	5209012	.	-	.	Parent=Os03t0199050-00
Chr03	irgsp1_rep	five_prime_UTR	5208069	5208185	.	-	.	Parent=Os03t0199050-00
Chr03	irgsp1_rep	CDS	5208025	5208068	.	-	0	Parent=Os03t0199050-00
Chr03	irgsp1_rep	CDS	5206587	5206965	.	-	1	Parent=Os03t0199050-00
Chr03	irgsp1_rep	mRNA	5214115	5217654	.	+	.	ID=Os03t0199100-01;Name=Os03t0199100-01;Locus_id=Os03g0199100;Note=Protein of unknown function DUF677 family protein.;Transcript_evidence=AK069890 (DDBJ%2C Best hit);ORF_evidence=A2XDK8 (UniProt);InterPro=Protein of unknown function DUF677 (IPR007749);NIAS_FLcDNA=J023038J09;Expression=AK069890;TENOR=Os03t0199100-01;KEGG=Os03t0199100-01
Chr03	irgsp1_rep	five_prime_UTR	5214115	5214848	.	+	.	Parent=Os03t0199100-01
Chr03	irgsp1_rep	CDS	5214849	5216015	.	+	0	Parent=Os03t0199100-01
Chr03	irgsp1_rep	three_prime_UTR	5216016	5216050	.	+	.	Parent=Os03t0199100-01
Chr03	irgsp1_rep	three_prime_UTR	5217467	5217654	.	+	.	Parent=Os03t0199100-01
Chr03	irgsp1_rep	mRNA	5218194	5219643	.	-	.	ID=Os03t0199200-01;Name=Os03t0199200-01;Locus_id=Os03g0199200;Note=Conserved hypothetical protein.;Transcript_evidence=AK109717 (DDBJ%2C Best hit);ORF_evidence=Q2QZP8 (UniProt);NIAS_FLcDNA=002-146-A01;TENOR=Os03t0199200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	5218803	5219643	.	-	.	Parent=Os03t0199200-01
Chr03	irgsp1_rep	CDS	5218566	5218802	.	-	0	Parent=Os03t0199200-01
Chr03	irgsp1_rep	three_prime_UTR	5218194	5218565	.	-	.	Parent=Os03t0199200-01
Chr03	irgsp1_rep	mRNA	5218609	5219719	.	+	.	ID=Os03t0199300-01;Name=Os03t0199300-01;Locus_id=Os03g0199300;Note=Conserved hypothetical protein.;Transcript_evidence=AK111388 (DDBJ%2C Best hit);ORF_evidence=Q10QE8 (UniProt);NIAS_FLcDNA=002-182-C02;TENOR=Os03t0199300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	5218609	5218850	.	+	.	Parent=Os03t0199300-01
Chr03	irgsp1_rep	CDS	5218851	5219576	.	+	0	Parent=Os03t0199300-01
Chr03	irgsp1_rep	three_prime_UTR	5219577	5219719	.	+	.	Parent=Os03t0199300-01
Chr03	irgsp1_rep	mRNA	5225077	5226496	.	-	.	ID=Os03t0199500-01;Name=Os03t0199500-01;Locus_id=Os03g0199500;Note=Conserved hypothetical protein.;Transcript_evidence=AK242345 (DDBJ%2C Best hit);ORF_evidence=B8AQ43 (UniProt);NIAS_FLcDNA=J080009C14;TENOR=Os03t0199500-01;KEGG=Os03t0199500-01
Chr03	irgsp1_rep	five_prime_UTR	5226369	5226496	.	-	.	Parent=Os03t0199500-01
Chr03	irgsp1_rep	CDS	5225964	5226368	.	-	0	Parent=Os03t0199500-01
Chr03	irgsp1_rep	CDS	5225765	5225875	.	-	0	Parent=Os03t0199500-01
Chr03	irgsp1_rep	CDS	5225561	5225644	.	-	0	Parent=Os03t0199500-01
Chr03	irgsp1_rep	CDS	5225439	5225474	.	-	0	Parent=Os03t0199500-01
Chr03	irgsp1_rep	three_prime_UTR	5225077	5225438	.	-	.	Parent=Os03t0199500-01
Chr03	irgsp1_rep	mRNA	5232956	5233654	.	+	.	ID=Os03t0199800-00;Name=Os03t0199800-00;Locus_id=Os03g0199800;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);InterPro=Ribonuclease H1%2C N-terminal (IPR011320);TENOR=Os03t0199800-00
Chr03	irgsp1_rep	CDS	5232956	5233654	.	+	0	Parent=Os03t0199800-00
Chr03	irgsp1_rep	mRNA	5253519	5254758	.	+	.	ID=Os03t0200000-00;Name=Os03t0200000-00;Locus_id=Os03g0200000;Note=Similar to Haemolysin-III related family protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10QE3 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Hly-III-related (IPR004254);TENOR=Os03t0200000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	5253519	5253826	.	+	0	Parent=Os03t0200000-00
Chr03	irgsp1_rep	CDS	5253927	5254758	.	+	1	Parent=Os03t0200000-00
Chr03	irgsp1_rep	mRNA	5253727	5254710	.	-	.	ID=Os03t0200100-00;Name=Os03t0200100-00;Locus_id=Os03g0200100;Note=Hypothetical protein.;Transcript_evidence=BT019264 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0200100-00
Chr03	irgsp1_rep	CDS	5254486	5254710	.	-	0	Parent=Os03t0200100-00
Chr03	irgsp1_rep	three_prime_UTR	5254005	5254485	.	-	.	Parent=Os03t0200100-00
Chr03	irgsp1_rep	three_prime_UTR	5253727	5253889	.	-	.	Parent=Os03t0200100-00
Chr03	irgsp1_rep	mRNA	5261710	5263669	.	+	.	ID=Os03t0200200-01;Name=Os03t0200200-01;Locus_id=Os03g0200200;Note=Conserved hypothetical protein.;Transcript_evidence=AK066091 (DDBJ%2C Best hit);ORF_evidence=A3AF58 (UniProt);NIAS_FLcDNA=J013055M21;Expression=AK066091;TENOR=Os03t0200200-01;KEGG=Os03t0200200-01
Chr03	irgsp1_rep	five_prime_UTR	5261710	5261811	.	+	.	Parent=Os03t0200200-01
Chr03	irgsp1_rep	CDS	5261812	5262079	.	+	0	Parent=Os03t0200200-01
Chr03	irgsp1_rep	CDS	5262478	5262644	.	+	2	Parent=Os03t0200200-01
Chr03	irgsp1_rep	CDS	5263198	5263410	.	+	0	Parent=Os03t0200200-01
Chr03	irgsp1_rep	three_prime_UTR	5263411	5263669	.	+	.	Parent=Os03t0200200-01
Chr03	irgsp1_rep	mRNA	5271246	5272329	.	+	.	ID=Os03t0200400-01;Name=Os03t0200400-01;Locus_id=Os03g0200400;Note=Conserved hypothetical protein.;Transcript_evidence=AK107086 (DDBJ%2C Best hit);ORF_evidence=B8AQ50 (UniProt);NIAS_FLcDNA=002-121-G06;TENOR=Os03t0200400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	5271246	5271404	.	+	.	Parent=Os03t0200400-01
Chr03	irgsp1_rep	CDS	5271405	5271428	.	+	0	Parent=Os03t0200400-01
Chr03	irgsp1_rep	CDS	5271515	5271848	.	+	0	Parent=Os03t0200400-01
Chr03	irgsp1_rep	CDS	5272027	5272187	.	+	2	Parent=Os03t0200400-01
Chr03	irgsp1_rep	three_prime_UTR	5272188	5272329	.	+	.	Parent=Os03t0200400-01
Chr03	irgsp1_rep	mRNA	5274929	5277136	.	+	.	ID=Os03t0200500-01;Name=Os03t0200500-01;Locus_id=Os03g0200500;Oryzabase Gene Symbol Synonym(s)=cyc07%2C T151;Note=40S ribosomal protein S3a (CYC07 protein).;Transcript_evidence=AK104243 (DDBJ%2C Best hit),AK069251 (DDBJ%2C Best hit);ORF_evidence=P49397 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S3Ae (IPR001593),Ribosomal protein S3Ae%2C conserved site (IPR018281);NIAS_FLcDNA=006-308-D02,J023013H23;Oryzabase=14442;Expression=AK104243;TENOR=Os03t0200500-01;KEGG=Os03t0200500-01
Chr03	irgsp1_rep	five_prime_UTR	5274929	5274999	.	+	.	Parent=Os03t0200500-01
Chr03	irgsp1_rep	CDS	5275000	5275058	.	+	0	Parent=Os03t0200500-01
Chr03	irgsp1_rep	CDS	5275177	5275282	.	+	1	Parent=Os03t0200500-01
Chr03	irgsp1_rep	CDS	5276090	5276227	.	+	0	Parent=Os03t0200500-01
Chr03	irgsp1_rep	CDS	5276298	5276483	.	+	0	Parent=Os03t0200500-01
Chr03	irgsp1_rep	CDS	5276579	5276779	.	+	0	Parent=Os03t0200500-01
Chr03	irgsp1_rep	CDS	5276866	5276964	.	+	0	Parent=Os03t0200500-01
Chr03	irgsp1_rep	three_prime_UTR	5276965	5277136	.	+	.	Parent=Os03t0200500-01
Chr03	irgsp1_rep	mRNA	5275019	5277136	.	+	.	ID=Os03t0200500-02;Name=Os03t0200500-02;Locus_id=Os03g0200500;Oryzabase Gene Symbol Synonym(s)=cyc07%2C T151;Note=Similar to 40S ribosomal protein S3a.;Transcript_evidence=AK104699 (DDBJ%2C Best hit);ORF_evidence=P49397 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S3Ae (IPR001593),Ribosomal protein S3Ae%2C conserved site (IPR018281);NIAS_FLcDNA=001-037-C03;Oryzabase=14442;Expression=AK104699;TENOR=Os03t0200500-02;KEGG=Os03t0200500-02
Chr03	irgsp1_rep	five_prime_UTR	5275019	5275020	.	+	.	Parent=Os03t0200500-02
Chr03	irgsp1_rep	CDS	5275021	5275058	.	+	0	Parent=Os03t0200500-02
Chr03	irgsp1_rep	CDS	5275177	5275282	.	+	1	Parent=Os03t0200500-02
Chr03	irgsp1_rep	CDS	5276090	5276227	.	+	0	Parent=Os03t0200500-02
Chr03	irgsp1_rep	CDS	5276298	5276483	.	+	0	Parent=Os03t0200500-02
Chr03	irgsp1_rep	CDS	5276579	5276779	.	+	0	Parent=Os03t0200500-02
Chr03	irgsp1_rep	CDS	5276866	5276964	.	+	0	Parent=Os03t0200500-02
Chr03	irgsp1_rep	three_prime_UTR	5276965	5277136	.	+	.	Parent=Os03t0200500-02
Chr03	irgsp1_rep	mRNA	5277687	5280831	.	-	.	ID=Os03t0200600-00;Name=Os03t0200600-00;Locus_id=Os03g0200600;Note=Similar to predicted protein.;Transcript_evidence=BT060530 (DDBJ);ORF_evidence=Q10QD7 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);TENOR=Os03t0200600-00;KEGG=Os03t0200600-00
Chr03	irgsp1_rep	five_prime_UTR	5280798	5280831	.	-	.	Parent=Os03t0200600-00
Chr03	irgsp1_rep	CDS	5280594	5280797	.	-	0	Parent=Os03t0200600-00
Chr03	irgsp1_rep	CDS	5280234	5280507	.	-	0	Parent=Os03t0200600-00
Chr03	irgsp1_rep	CDS	5278686	5279899	.	-	2	Parent=Os03t0200600-00
Chr03	irgsp1_rep	CDS	5278450	5278597	.	-	0	Parent=Os03t0200600-00
Chr03	irgsp1_rep	CDS	5277708	5278042	.	-	2	Parent=Os03t0200600-00
Chr03	irgsp1_rep	three_prime_UTR	5277687	5277707	.	-	.	Parent=Os03t0200600-00
Chr03	irgsp1_rep	mRNA	5283459	5286844	.	-	.	ID=Os03t0200700-01;Name=Os03t0200700-01;Locus_id=Os03g0200700;Note=Similar to Surfeit 1 homolog.;Transcript_evidence=AK103392 (DDBJ%2C Best hit);ORF_evidence=NP_001152069.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Surfeit locus 1 (IPR002994);NIAS_FLcDNA=J033127M05;Expression=AK103392;TENOR=Os03t0200700-01;KEGG=Os03t0200700-01
Chr03	irgsp1_rep	five_prime_UTR	5286786	5286844	.	-	.	Parent=Os03t0200700-01
Chr03	irgsp1_rep	CDS	5286647	5286785	.	-	0	Parent=Os03t0200700-01
Chr03	irgsp1_rep	CDS	5286425	5286528	.	-	2	Parent=Os03t0200700-01
Chr03	irgsp1_rep	CDS	5286068	5286318	.	-	0	Parent=Os03t0200700-01
Chr03	irgsp1_rep	CDS	5285340	5285523	.	-	1	Parent=Os03t0200700-01
Chr03	irgsp1_rep	CDS	5284760	5285043	.	-	0	Parent=Os03t0200700-01
Chr03	irgsp1_rep	CDS	5283854	5283923	.	-	1	Parent=Os03t0200700-01
Chr03	irgsp1_rep	three_prime_UTR	5283459	5283853	.	-	.	Parent=Os03t0200700-01
Chr03	irgsp1_rep	mRNA	5283554	5286527	.	-	.	ID=Os03t0200700-02;Name=Os03t0200700-02;Locus_id=Os03g0200700;Note=Similar to SURF1.;Transcript_evidence=AK061432 (DDBJ%2C Best hit);ORF_evidence=NP_001152069.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Surfeit locus 1 (IPR002994);NIAS_FLcDNA=006-306-H09;Expression=AK061432;TENOR=Os03t0200700-02;KEGG=Os03t0200700-02
Chr03	irgsp1_rep	five_prime_UTR	5286527	5286527	.	-	.	Parent=Os03t0200700-02
Chr03	irgsp1_rep	CDS	5286425	5286526	.	-	0	Parent=Os03t0200700-02
Chr03	irgsp1_rep	CDS	5286068	5286318	.	-	0	Parent=Os03t0200700-02
Chr03	irgsp1_rep	CDS	5285340	5285523	.	-	1	Parent=Os03t0200700-02
Chr03	irgsp1_rep	CDS	5284760	5285043	.	-	0	Parent=Os03t0200700-02
Chr03	irgsp1_rep	CDS	5283854	5283923	.	-	1	Parent=Os03t0200700-02
Chr03	irgsp1_rep	three_prime_UTR	5283554	5283853	.	-	.	Parent=Os03t0200700-02
Chr03	irgsp1_rep	mRNA	5287681	5290481	.	-	.	ID=Os03t0200800-01;Name=Os03t0200800-01;Locus_id=Os03g0200800;Oryzabase Gene Symbol Synonym(s)=OsARL1a%2C ARL1a;Oryzabase Gene Name Synonym(s)=ARF-like protein 1a;Note=ARF/SAR superfamily domain containing protein.;Transcript_evidence=AK112007 (DDBJ%2C Best hit);ORF_evidence=NP_001149042.1 (RefSeq);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: intracellular protein transport (GO:0006886),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Cellular Component: membrane (GO:0016020),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C SAR1-type (IPR006687),Small GTPase superfamily%2C ARF/SAR type (IPR006689),Small GTPase superfamily%2C Ras type (IPR020849),Small GTPase superfamily%2C ARF type (IPR024156);NIAS_FLcDNA=006-206-H08;Oryzabase=21016;Expression=AK112007;TENOR=Os03t0200800-01;KEGG=Os03t0200800-01
Chr03	irgsp1_rep	five_prime_UTR	5290332	5290481	.	-	.	Parent=Os03t0200800-01
Chr03	irgsp1_rep	CDS	5290294	5290331	.	-	0	Parent=Os03t0200800-01
Chr03	irgsp1_rep	CDS	5289315	5289396	.	-	1	Parent=Os03t0200800-01
Chr03	irgsp1_rep	CDS	5289083	5289237	.	-	0	Parent=Os03t0200800-01
Chr03	irgsp1_rep	CDS	5288219	5288380	.	-	1	Parent=Os03t0200800-01
Chr03	irgsp1_rep	CDS	5288017	5288134	.	-	1	Parent=Os03t0200800-01
Chr03	irgsp1_rep	three_prime_UTR	5287681	5288016	.	-	.	Parent=Os03t0200800-01
Chr03	irgsp1_rep	mRNA	5294523	5297017	.	+	.	ID=Os03t0201000-01;Name=Os03t0201000-01;Locus_id=Os03g0201000;Note=Conserved hypothetical protein.;Transcript_evidence=AK069273 (DDBJ%2C Best hit);ORF_evidence=A2XDL8 (UniProt);NIAS_FLcDNA=J023013K23;Expression=AK069273;TENOR=Os03t0201000-01;KEGG=Os03t0201000-01
Chr03	irgsp1_rep	five_prime_UTR	5294523	5294601	.	+	.	Parent=Os03t0201000-01
Chr03	irgsp1_rep	CDS	5294602	5294864	.	+	0	Parent=Os03t0201000-01
Chr03	irgsp1_rep	CDS	5295570	5295894	.	+	1	Parent=Os03t0201000-01
Chr03	irgsp1_rep	CDS	5296273	5296366	.	+	0	Parent=Os03t0201000-01
Chr03	irgsp1_rep	CDS	5296468	5296769	.	+	2	Parent=Os03t0201000-01
Chr03	irgsp1_rep	three_prime_UTR	5296770	5297017	.	+	.	Parent=Os03t0201000-01
Chr03	irgsp1_rep	mRNA	5297336	5301348	.	-	.	ID=Os03t0201100-01;Name=Os03t0201100-01;Locus_id=Os03g0201100;CGSNL Gene Symbol=CYP65;CGSNL Gene Name=CYCLOPHILIN 65;Oryzabase Gene Symbol Synonym(s)=OsCYP65%2C OsCYP-9;Oryzabase Gene Name Synonym(s)=cyclophilin 65%2C cyclophilin 9;Note=Similar to Cyclophilin-like protein PPIL3b.;Transcript_evidence=AK102337 (DDBJ%2C Best hit);ORF_evidence=XP_002866699.1 (RefSeq);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842);InterPro=U box domain (IPR003613),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J033091A16;Oryzabase=10076;Expression=AK102337;TENOR=Os03t0201100-01;KEGG=Os03t0201100-01 (EC:5.2.1.8)
Chr03	irgsp1_rep	five_prime_UTR	5301241	5301348	.	-	.	Parent=Os03t0201100-01
Chr03	irgsp1_rep	CDS	5301113	5301240	.	-	0	Parent=Os03t0201100-01
Chr03	irgsp1_rep	CDS	5300695	5300757	.	-	1	Parent=Os03t0201100-01
Chr03	irgsp1_rep	CDS	5300499	5300602	.	-	1	Parent=Os03t0201100-01
Chr03	irgsp1_rep	CDS	5300294	5300395	.	-	2	Parent=Os03t0201100-01
Chr03	irgsp1_rep	CDS	5300159	5300211	.	-	2	Parent=Os03t0201100-01
Chr03	irgsp1_rep	three_prime_UTR	5300122	5300158	.	-	.	Parent=Os03t0201100-01
Chr03	irgsp1_rep	three_prime_UTR	5299951	5300026	.	-	.	Parent=Os03t0201100-01
Chr03	irgsp1_rep	three_prime_UTR	5299499	5299860	.	-	.	Parent=Os03t0201100-01
Chr03	irgsp1_rep	three_prime_UTR	5299151	5299407	.	-	.	Parent=Os03t0201100-01
Chr03	irgsp1_rep	three_prime_UTR	5298763	5299051	.	-	.	Parent=Os03t0201100-01
Chr03	irgsp1_rep	three_prime_UTR	5298386	5298496	.	-	.	Parent=Os03t0201100-01
Chr03	irgsp1_rep	three_prime_UTR	5297908	5298287	.	-	.	Parent=Os03t0201100-01
Chr03	irgsp1_rep	three_prime_UTR	5297336	5297639	.	-	.	Parent=Os03t0201100-01
Chr03	irgsp1_rep	mRNA	5302428	5304763	.	+	.	ID=Os03t0201200-01;Name=Os03t0201200-01;Locus_id=Os03g0201200;Note=Conserved hypothetical protein.;Transcript_evidence=AK069630 (DDBJ%2C Best hit);ORF_evidence=B8AQ53 (UniProt);NIAS_FLcDNA=J023025I16;Expression=AK069630;TENOR=Os03t0201200-01;KEGG=Os03t0201200-01
Chr03	irgsp1_rep	five_prime_UTR	5302428	5302431	.	+	.	Parent=Os03t0201200-01
Chr03	irgsp1_rep	CDS	5302432	5302683	.	+	0	Parent=Os03t0201200-01
Chr03	irgsp1_rep	CDS	5303582	5303726	.	+	0	Parent=Os03t0201200-01
Chr03	irgsp1_rep	CDS	5303817	5303887	.	+	2	Parent=Os03t0201200-01
Chr03	irgsp1_rep	CDS	5303981	5304184	.	+	0	Parent=Os03t0201200-01
Chr03	irgsp1_rep	CDS	5304449	5304478	.	+	0	Parent=Os03t0201200-01
Chr03	irgsp1_rep	three_prime_UTR	5304479	5304763	.	+	.	Parent=Os03t0201200-01
Chr03	irgsp1_rep	mRNA	5302559	5304749	.	+	.	ID=Os03t0201200-02;Name=Os03t0201200-02;Locus_id=Os03g0201200;Note=Hypothetical conserved gene.;Transcript_evidence=AK099768 (DDBJ%2C Best hit);ORF_evidence=B8AQ53 (UniProt);NIAS_FLcDNA=J013095B16;Expression=AK099768;TENOR=Os03t0201200-02;KEGG=Os03t0201200-02
Chr03	irgsp1_rep	five_prime_UTR	5302559	5302560	.	+	.	Parent=Os03t0201200-02
Chr03	irgsp1_rep	CDS	5302561	5302683	.	+	0	Parent=Os03t0201200-02
Chr03	irgsp1_rep	CDS	5303582	5303726	.	+	0	Parent=Os03t0201200-02
Chr03	irgsp1_rep	CDS	5303817	5303887	.	+	2	Parent=Os03t0201200-02
Chr03	irgsp1_rep	CDS	5303981	5304184	.	+	0	Parent=Os03t0201200-02
Chr03	irgsp1_rep	CDS	5304449	5304478	.	+	0	Parent=Os03t0201200-02
Chr03	irgsp1_rep	three_prime_UTR	5304479	5304749	.	+	.	Parent=Os03t0201200-02
Chr03	irgsp1_rep	mRNA	5304942	5307612	.	+	.	ID=Os03t0201400-01;Name=Os03t0201400-01;Locus_id=Os03g0201400;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK101497 (DDBJ%2C Best hit);ORF_evidence=A2XDM1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033043G02;Expression=AK101497;TENOR=Os03t0201400-01;KEGG=Os03t0201400-01
Chr03	irgsp1_rep	five_prime_UTR	5304942	5304974	.	+	.	Parent=Os03t0201400-01
Chr03	irgsp1_rep	CDS	5304975	5307365	.	+	0	Parent=Os03t0201400-01
Chr03	irgsp1_rep	three_prime_UTR	5307366	5307612	.	+	.	Parent=Os03t0201400-01
Chr03	irgsp1_rep	mRNA	5304947	5314273	.	+	.	ID=Os03t0201400-02;Name=Os03t0201400-02;Locus_id=Os03g0201400;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK288935 (DDBJ%2C Best hit);ORF_evidence=NP_001173302.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J090082J19;TENOR=Os03t0201400-02;KEGG=Os03t0201400-02
Chr03	irgsp1_rep	five_prime_UTR	5304947	5304974	.	+	.	Parent=Os03t0201400-02
Chr03	irgsp1_rep	CDS	5304975	5307365	.	+	0	Parent=Os03t0201400-02
Chr03	irgsp1_rep	three_prime_UTR	5307366	5309116	.	+	.	Parent=Os03t0201400-02
Chr03	irgsp1_rep	three_prime_UTR	5309599	5309669	.	+	.	Parent=Os03t0201400-02
Chr03	irgsp1_rep	three_prime_UTR	5310269	5310789	.	+	.	Parent=Os03t0201400-02
Chr03	irgsp1_rep	three_prime_UTR	5310871	5310953	.	+	.	Parent=Os03t0201400-02
Chr03	irgsp1_rep	three_prime_UTR	5311045	5311123	.	+	.	Parent=Os03t0201400-02
Chr03	irgsp1_rep	three_prime_UTR	5311550	5312794	.	+	.	Parent=Os03t0201400-02
Chr03	irgsp1_rep	three_prime_UTR	5312959	5313199	.	+	.	Parent=Os03t0201400-02
Chr03	irgsp1_rep	three_prime_UTR	5313758	5313923	.	+	.	Parent=Os03t0201400-02
Chr03	irgsp1_rep	three_prime_UTR	5313998	5314273	.	+	.	Parent=Os03t0201400-02
Chr03	irgsp1_rep	mRNA	5317215	5321081	.	+	.	ID=Os03t0201500-01;Name=Os03t0201500-01;Locus_id=Os03g0201500;Note=Glycoside hydrolase%2C family 10 protein.;Transcript_evidence=AK318612 (DDBJ%2C Best hit);ORF_evidence=Q10QC6 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: hydrolase activity%2C acting on glycosyl bonds (GO:0016798),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 10 (IPR001000),Carbohydrate-binding%2C CenC-like (IPR003305),Galactose-binding domain-like (IPR008979),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J100087M15;TENOR=Os03t0201500-01;KEGG=Os03t0201500-01
Chr03	irgsp1_rep	five_prime_UTR	5317215	5317351	.	+	.	Parent=Os03t0201500-01
Chr03	irgsp1_rep	five_prime_UTR	5317528	5317549	.	+	.	Parent=Os03t0201500-01
Chr03	irgsp1_rep	CDS	5317550	5317610	.	+	0	Parent=Os03t0201500-01
Chr03	irgsp1_rep	CDS	5317824	5317871	.	+	2	Parent=Os03t0201500-01
Chr03	irgsp1_rep	CDS	5318819	5319043	.	+	2	Parent=Os03t0201500-01
Chr03	irgsp1_rep	CDS	5319168	5319331	.	+	2	Parent=Os03t0201500-01
Chr03	irgsp1_rep	CDS	5319422	5320648	.	+	0	Parent=Os03t0201500-01
Chr03	irgsp1_rep	three_prime_UTR	5320649	5321081	.	+	.	Parent=Os03t0201500-01
Chr03	irgsp1_rep	mRNA	5320785	5323969	.	-	.	ID=Os03t0201600-01;Name=Os03t0201600-01;Locus_id=Os03g0201600;Note=Similar to ischemia/reperfusion inducible protein.;Transcript_evidence=AK065564 (DDBJ%2C Best hit);ORF_evidence=NP_001148954.1 (RefSeq);InterPro=Sua5/YciO/YrdC%2C N-terminal (IPR006070),DHBP synthase RibB-like alpha/beta domain (IPR017945);NIAS_FLcDNA=J013032C08;TENOR=Os03t0201600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	5323842	5323969	.	-	.	Parent=Os03t0201600-01
Chr03	irgsp1_rep	CDS	5323765	5323841	.	-	0	Parent=Os03t0201600-01
Chr03	irgsp1_rep	CDS	5322664	5322997	.	-	1	Parent=Os03t0201600-01
Chr03	irgsp1_rep	three_prime_UTR	5322193	5322663	.	-	.	Parent=Os03t0201600-01
Chr03	irgsp1_rep	three_prime_UTR	5321806	5322097	.	-	.	Parent=Os03t0201600-01
Chr03	irgsp1_rep	three_prime_UTR	5321599	5321680	.	-	.	Parent=Os03t0201600-01
Chr03	irgsp1_rep	three_prime_UTR	5320785	5321148	.	-	.	Parent=Os03t0201600-01
Chr03	irgsp1_rep	mRNA	5321345	5323968	.	-	.	ID=Os03t0201600-02;Name=Os03t0201600-02;Locus_id=Os03g0201600;Note=Similar to ischemia/reperfusion inducible protein.;Transcript_evidence=AK067825 (DDBJ%2C Best hit);ORF_evidence=NP_001148954.1 (RefSeq);InterPro=Sua5/YciO/YrdC/YwlC (IPR004388),Sua5/YciO/YrdC%2C N-terminal (IPR006070),DHBP synthase RibB-like alpha/beta domain (IPR017945);NIAS_FLcDNA=J013119A09;Expression=AK067825;TENOR=Os03t0201600-02;KEGG=Os03t0201600-02
Chr03	irgsp1_rep	five_prime_UTR	5323842	5323968	.	-	.	Parent=Os03t0201600-02
Chr03	irgsp1_rep	CDS	5323765	5323841	.	-	0	Parent=Os03t0201600-02
Chr03	irgsp1_rep	CDS	5322776	5322997	.	-	1	Parent=Os03t0201600-02
Chr03	irgsp1_rep	CDS	5322193	5322368	.	-	1	Parent=Os03t0201600-02
Chr03	irgsp1_rep	CDS	5321806	5322097	.	-	2	Parent=Os03t0201600-02
Chr03	irgsp1_rep	CDS	5321623	5321680	.	-	1	Parent=Os03t0201600-02
Chr03	irgsp1_rep	three_prime_UTR	5321345	5321622	.	-	.	Parent=Os03t0201600-02
Chr03	irgsp1_rep	mRNA	5324635	5327751	.	+	.	ID=Os03t0201700-01;Name=Os03t0201700-01;Locus_id=Os03g0201700;Note=Histone acetylation protein 2 domain containing protein.;Transcript_evidence=AK102580 (DDBJ%2C Best hit);ORF_evidence=B8AQ54 (UniProt);InterPro=Histone acetylation protein 2 (IPR019519);NIAS_FLcDNA=J033098B09;Expression=AK102580;TENOR=Os03t0201700-01;KEGG=Os03t0201700-01
Chr03	irgsp1_rep	five_prime_UTR	5324635	5324670	.	+	.	Parent=Os03t0201700-01
Chr03	irgsp1_rep	CDS	5324671	5324840	.	+	0	Parent=Os03t0201700-01
Chr03	irgsp1_rep	CDS	5324938	5325030	.	+	1	Parent=Os03t0201700-01
Chr03	irgsp1_rep	CDS	5325332	5325507	.	+	1	Parent=Os03t0201700-01
Chr03	irgsp1_rep	CDS	5325580	5325626	.	+	2	Parent=Os03t0201700-01
Chr03	irgsp1_rep	CDS	5326236	5326305	.	+	0	Parent=Os03t0201700-01
Chr03	irgsp1_rep	CDS	5326464	5326690	.	+	2	Parent=Os03t0201700-01
Chr03	irgsp1_rep	CDS	5326778	5326867	.	+	0	Parent=Os03t0201700-01
Chr03	irgsp1_rep	CDS	5326974	5327049	.	+	0	Parent=Os03t0201700-01
Chr03	irgsp1_rep	CDS	5327183	5327388	.	+	2	Parent=Os03t0201700-01
Chr03	irgsp1_rep	three_prime_UTR	5327389	5327751	.	+	.	Parent=Os03t0201700-01
Chr03	irgsp1_rep	mRNA	5326713	5330590	.	-	.	ID=Os03t0201800-01;Name=Os03t0201800-01;Locus_id=Os03g0201800;Note=Similar to Tapetum specific protein (Tapetum-specific endoxylanase).;Transcript_evidence=AK105496 (DDBJ%2C Best hit);ORF_evidence=Q10QC1 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 10 (IPR001000),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-127-C10;Expression=AK105496;TENOR=Os03t0201800-01;KEGG=Os03t0201800-01
Chr03	irgsp1_rep	five_prime_UTR	5330563	5330590	.	-	.	Parent=Os03t0201800-01
Chr03	irgsp1_rep	CDS	5330508	5330562	.	-	0	Parent=Os03t0201800-01
Chr03	irgsp1_rep	CDS	5330151	5330203	.	-	2	Parent=Os03t0201800-01
Chr03	irgsp1_rep	CDS	5329849	5330023	.	-	0	Parent=Os03t0201800-01
Chr03	irgsp1_rep	CDS	5329601	5329767	.	-	2	Parent=Os03t0201800-01
Chr03	irgsp1_rep	CDS	5329264	5329359	.	-	0	Parent=Os03t0201800-01
Chr03	irgsp1_rep	CDS	5328023	5329139	.	-	0	Parent=Os03t0201800-01
Chr03	irgsp1_rep	CDS	5327348	5327415	.	-	2	Parent=Os03t0201800-01
Chr03	irgsp1_rep	CDS	5327251	5327268	.	-	0	Parent=Os03t0201800-01
Chr03	irgsp1_rep	three_prime_UTR	5326713	5327250	.	-	.	Parent=Os03t0201800-01
Chr03	irgsp1_rep	mRNA	5327677	5330571	.	-	.	ID=Os03t0201800-02;Name=Os03t0201800-02;Locus_id=Os03g0201800;Note=Similar to Glycosyl hydrolase family 10 protein%2C expressed.;Transcript_evidence=AK121289 (DDBJ%2C Best hit);ORF_evidence=Q10QC1 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 10 (IPR001000),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J023109C11;Expression=AK121289;TENOR=Os03t0201800-02;KEGG=Os03t0201800-02
Chr03	irgsp1_rep	five_prime_UTR	5330563	5330571	.	-	.	Parent=Os03t0201800-02
Chr03	irgsp1_rep	CDS	5330508	5330562	.	-	0	Parent=Os03t0201800-02
Chr03	irgsp1_rep	CDS	5330151	5330203	.	-	2	Parent=Os03t0201800-02
Chr03	irgsp1_rep	CDS	5329849	5330023	.	-	0	Parent=Os03t0201800-02
Chr03	irgsp1_rep	CDS	5329601	5329767	.	-	2	Parent=Os03t0201800-02
Chr03	irgsp1_rep	CDS	5329264	5329359	.	-	0	Parent=Os03t0201800-02
Chr03	irgsp1_rep	CDS	5328012	5329139	.	-	0	Parent=Os03t0201800-02
Chr03	irgsp1_rep	three_prime_UTR	5327677	5328011	.	-	.	Parent=Os03t0201800-02
Chr03	irgsp1_rep	mRNA	5331153	5335603	.	-	.	ID=Os03t0201901-00;Name=Os03t0201901-00;Locus_id=Os03g0201901;Note=Glycoside hydrolase%2C family 10 domain containing protein.;Transcript_evidence=AK363770 (DDBJ);ORF_evidence=Q10QC0 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 10 (IPR001000),Galactose-binding domain-like (IPR008979),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);TENOR=Os03t0201901-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	5335508	5335603	.	-	0	Parent=Os03t0201901-00
Chr03	irgsp1_rep	CDS	5332899	5333121	.	-	0	Parent=Os03t0201901-00
Chr03	irgsp1_rep	CDS	5332636	5332802	.	-	2	Parent=Os03t0201901-00
Chr03	irgsp1_rep	CDS	5331311	5332537	.	-	0	Parent=Os03t0201901-00
Chr03	irgsp1_rep	three_prime_UTR	5331153	5331310	.	-	.	Parent=Os03t0201901-00
Chr03	irgsp1_rep	mRNA	5341103	5347082	.	-	.	ID=Os03t0202001-01;Name=Os03t0202001-01;Locus_id=Os03g0202001;Note=Similar to Adenylyl-sulfate kinase.;Transcript_evidence=AK241470 (DDBJ%2C Best hit);ORF_evidence=A3AF71 (UniProt);GO=Biological Process: sulfate assimilation (GO:0000103),Molecular Function: ATP binding (GO:0005524),Molecular Function: kinase activity (GO:0016301),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Adenylylsulphate kinase%2C C-terminal (IPR002891);NIAS_FLcDNA=J065165C13;TENOR=Os03t0202001-01;KEGG=Os03t0202001-01 (EC:2.7.1.25)
Chr03	irgsp1_rep	five_prime_UTR	5346850	5347082	.	-	.	Parent=Os03t0202001-01
Chr03	irgsp1_rep	CDS	5346663	5346849	.	-	0	Parent=Os03t0202001-01
Chr03	irgsp1_rep	CDS	5345565	5345705	.	-	2	Parent=Os03t0202001-01
Chr03	irgsp1_rep	CDS	5342686	5342835	.	-	2	Parent=Os03t0202001-01
Chr03	irgsp1_rep	CDS	5342499	5342617	.	-	2	Parent=Os03t0202001-01
Chr03	irgsp1_rep	CDS	5342345	5342429	.	-	0	Parent=Os03t0202001-01
Chr03	irgsp1_rep	CDS	5342167	5342213	.	-	2	Parent=Os03t0202001-01
Chr03	irgsp1_rep	CDS	5341389	5341487	.	-	0	Parent=Os03t0202001-01
Chr03	irgsp1_rep	three_prime_UTR	5341103	5341388	.	-	.	Parent=Os03t0202001-01
Chr03	irgsp1_rep	mRNA	5348313	5351951	.	-	.	ID=Os03t0202200-01;Name=Os03t0202200-01;Locus_id=Os03g0202200;Oryzabase Gene Symbol Synonym(s)=OsVDAC4%2C OsVDAC5%2C VDAC5;Oryzabase Gene Name Synonym(s)=voltage-dependent anion-selective channel 4%2C voltage-dependent anion channel 5;Note=Porin-like protein.;Transcript_evidence=AK121020 (DDBJ%2C Best hit);ORF_evidence=Q10QB6 (UniProt);GO=Biological Process: anion transport (GO:0006820),Biological Process: regulation of anion transport (GO:0044070),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial outer membrane (GO:0005741),Molecular Function: voltage-gated anion channel activity (GO:0008308);InterPro=Porin%2C eukaryotic type (IPR001925);NIAS_FLcDNA=J023049E21;Oryzabase=10169;Expression=AK121020;TENOR=Os03t0202200-01;KEGG=Os03t0202200-01
Chr03	irgsp1_rep	five_prime_UTR	5351825	5351951	.	-	.	Parent=Os03t0202200-01
Chr03	irgsp1_rep	CDS	5351773	5351824	.	-	0	Parent=Os03t0202200-01
Chr03	irgsp1_rep	CDS	5351586	5351653	.	-	2	Parent=Os03t0202200-01
Chr03	irgsp1_rep	CDS	5349449	5349559	.	-	0	Parent=Os03t0202200-01
Chr03	irgsp1_rep	CDS	5349277	5349363	.	-	0	Parent=Os03t0202200-01
Chr03	irgsp1_rep	CDS	5349001	5349209	.	-	0	Parent=Os03t0202200-01
Chr03	irgsp1_rep	CDS	5348616	5348922	.	-	1	Parent=Os03t0202200-01
Chr03	irgsp1_rep	three_prime_UTR	5348313	5348615	.	-	.	Parent=Os03t0202200-01
Chr03	irgsp1_rep	mRNA	5348398	5351838	.	+	.	ID=Os03t0202250-00;Name=Os03t0202250-00;Locus_id=Os03g0202250;Note=Hypothetical gene.;Transcript_evidence=BT083674 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0202250-00;KEGG=Os03t0202250-00
Chr03	irgsp1_rep	five_prime_UTR	5348398	5348915	.	+	.	Parent=Os03t0202250-00
Chr03	irgsp1_rep	five_prime_UTR	5348990	5348990	.	+	.	Parent=Os03t0202250-00
Chr03	irgsp1_rep	CDS	5348991	5349211	.	+	0	Parent=Os03t0202250-00
Chr03	irgsp1_rep	CDS	5349285	5349363	.	+	1	Parent=Os03t0202250-00
Chr03	irgsp1_rep	CDS	5349449	5349505	.	+	0	Parent=Os03t0202250-00
Chr03	irgsp1_rep	three_prime_UTR	5349506	5349558	.	+	.	Parent=Os03t0202250-00
Chr03	irgsp1_rep	three_prime_UTR	5351585	5351643	.	+	.	Parent=Os03t0202250-00
Chr03	irgsp1_rep	three_prime_UTR	5351762	5351838	.	+	.	Parent=Os03t0202250-00
Chr03	irgsp1_rep	mRNA	5352944	5357283	.	-	.	ID=Os03t0202300-01;Name=Os03t0202300-01;Locus_id=Os03g0202300;Note=Similar to radical SAM domain-containing protein.;Transcript_evidence=AK071317 (DDBJ%2C Best hit);ORF_evidence=NP_188597.1 (RefSeq);GO=Biological Process: rRNA processing (GO:0006364),Cellular Component: cytoplasm (GO:0005737),Molecular Function: catalytic activity (GO:0003824),Molecular Function: RNA methyltransferase activity (GO:0008173),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=Ribosomal RNA large subunit methyltransferase RlmN%3B (IPR004383),Radical SAM (IPR007197);NIAS_FLcDNA=J023084C07;Expression=AK071317;TENOR=Os03t0202300-01;KEGG=Os03t0202300-01
Chr03	irgsp1_rep	five_prime_UTR	5357211	5357283	.	-	.	Parent=Os03t0202300-01
Chr03	irgsp1_rep	CDS	5357074	5357210	.	-	0	Parent=Os03t0202300-01
Chr03	irgsp1_rep	CDS	5356777	5356942	.	-	1	Parent=Os03t0202300-01
Chr03	irgsp1_rep	CDS	5355903	5356013	.	-	0	Parent=Os03t0202300-01
Chr03	irgsp1_rep	CDS	5355572	5355706	.	-	0	Parent=Os03t0202300-01
Chr03	irgsp1_rep	CDS	5354838	5354942	.	-	0	Parent=Os03t0202300-01
Chr03	irgsp1_rep	CDS	5354012	5354181	.	-	0	Parent=Os03t0202300-01
Chr03	irgsp1_rep	CDS	5353820	5353919	.	-	1	Parent=Os03t0202300-01
Chr03	irgsp1_rep	CDS	5353226	5353468	.	-	0	Parent=Os03t0202300-01
Chr03	irgsp1_rep	three_prime_UTR	5352944	5353225	.	-	.	Parent=Os03t0202300-01
Chr03	irgsp1_rep	mRNA	5373013	5379417	.	+	.	ID=Os03t0202500-01;Name=Os03t0202500-01;Locus_id=Os03g0202500;Oryzabase Gene Symbol Synonym(s)=OsFbox132%2C Os_F0228;Oryzabase Gene Name Synonym(s)=F-box protein 132;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK071140 (DDBJ%2C Best hit);ORF_evidence=Q10QB2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810);NIAS_FLcDNA=J023081B16;Oryzabase=16923;Expression=AK071140;TENOR=Os03t0202500-01;KEGG=Os03t0202500-01
Chr03	irgsp1_rep	five_prime_UTR	5373013	5373057	.	+	.	Parent=Os03t0202500-01
Chr03	irgsp1_rep	CDS	5373058	5373145	.	+	0	Parent=Os03t0202500-01
Chr03	irgsp1_rep	CDS	5375529	5375635	.	+	2	Parent=Os03t0202500-01
Chr03	irgsp1_rep	CDS	5377775	5378593	.	+	0	Parent=Os03t0202500-01
Chr03	irgsp1_rep	CDS	5378693	5378842	.	+	0	Parent=Os03t0202500-01
Chr03	irgsp1_rep	CDS	5378933	5379301	.	+	0	Parent=Os03t0202500-01
Chr03	irgsp1_rep	three_prime_UTR	5379302	5379417	.	+	.	Parent=Os03t0202500-01
Chr03	irgsp1_rep	mRNA	5393933	5396987	.	-	.	ID=Os03t0203000-01;Name=Os03t0203000-01;Locus_id=Os03g0203000;Note=Similar to somatic embryogenesis related protein.;Transcript_evidence=AK065462 (DDBJ%2C Best hit);ORF_evidence=NP_001149854.1 (RefSeq);InterPro=CASC3/Barentsz eIF4AIII binding (IPR018545);NIAS_FLcDNA=J013021H17;Expression=AK065462;TENOR=Os03t0203000-01;KEGG=Os03t0203000-01
Chr03	irgsp1_rep	five_prime_UTR	5396914	5396987	.	-	.	Parent=Os03t0203000-01
Chr03	irgsp1_rep	CDS	5396768	5396913	.	-	0	Parent=Os03t0203000-01
Chr03	irgsp1_rep	CDS	5396301	5396577	.	-	1	Parent=Os03t0203000-01
Chr03	irgsp1_rep	CDS	5394926	5394983	.	-	0	Parent=Os03t0203000-01
Chr03	irgsp1_rep	CDS	5394228	5394838	.	-	2	Parent=Os03t0203000-01
Chr03	irgsp1_rep	three_prime_UTR	5393933	5394227	.	-	.	Parent=Os03t0203000-01
Chr03	irgsp1_rep	mRNA	5400960	5406847	.	+	.	ID=Os03t0203100-01;Name=Os03t0203100-01;Locus_id=Os03g0203100;Note=Nucleolar 27S pre-rRNA processing%2C Urb2/Npa2%2C C-terminal domain containing protein.;Transcript_evidence=AK102234 (DDBJ%2C Best hit);ORF_evidence=B9F615 (UniProt);InterPro=Nucleolar 27S pre-rRNA processing%2C Urb2/Npa2%2C C-terminal (IPR018849);NIAS_FLcDNA=J033088B05;TENOR=Os03t0203100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	5400960	5400961	.	+	.	Parent=Os03t0203100-01
Chr03	irgsp1_rep	CDS	5400962	5401081	.	+	0	Parent=Os03t0203100-01
Chr03	irgsp1_rep	CDS	5401271	5401572	.	+	0	Parent=Os03t0203100-01
Chr03	irgsp1_rep	CDS	5402223	5403901	.	+	1	Parent=Os03t0203100-01
Chr03	irgsp1_rep	CDS	5404945	5405362	.	+	2	Parent=Os03t0203100-01
Chr03	irgsp1_rep	CDS	5405453	5405615	.	+	1	Parent=Os03t0203100-01
Chr03	irgsp1_rep	CDS	5405867	5405970	.	+	0	Parent=Os03t0203100-01
Chr03	irgsp1_rep	CDS	5406041	5406132	.	+	1	Parent=Os03t0203100-01
Chr03	irgsp1_rep	CDS	5406257	5406333	.	+	2	Parent=Os03t0203100-01
Chr03	irgsp1_rep	three_prime_UTR	5406334	5406508	.	+	.	Parent=Os03t0203100-01
Chr03	irgsp1_rep	three_prime_UTR	5406583	5406847	.	+	.	Parent=Os03t0203100-01
Chr03	irgsp1_rep	mRNA	5422206	5423780	.	+	.	ID=Os03t0203200-01;Name=Os03t0203200-01;Locus_id=Os03g0203200;RAP-DB Gene Symbol Synonym(s)=D14%2C d14(d10)%2C dwf13%2C d10%2C d14%2C D88%2C HTD2%2C OsD14%2C qPPB3%2C D88/D14;RAP-DB Gene Name Synonym(s)=DWARF KAMIKAWABUNWAI TILLERING%2C kamikawabunwai tillering dwarf%2C dwarf-14%2C DWARF14%2C dwarf 14%2C Dwarf 88%2C HIGH-TILLERING DWARF 2%2C Primary panicle branch number 3;CGSNL Gene Symbol=D14;CGSNL Gene Name=DWARF KAMIKAWABUNWAI TILLERING;Oryzabase Gene Symbol Synonym(s)=d14(d10)%2C dwf13%2C d10%2C d14%2C D88%2C HTD2%2C OsD14%2C qPPB3%2C D88/D14%2C HTD4;Oryzabase Gene Name Synonym(s)=kamikawabunwai tillering dwarf%2C dwarf-14%2C DWARF14%2C dwarf 14%2C Dwarf 88%2C HIGH-TILLERING DWARF 2%2C Primary panicle branch number 3%2C high-tillering dwarf 4;Note=Alpha/beta hydrolase%2C Strigolactone receptor%2C Strigolactone perception%2C Reguration of shoot branching;Transcript_evidence=AK070827;ORF_evidence=Q10QA5;InterPro=Alpha/Beta hydrolase fold (IPR029058),Alpha/beta hydrolase fold-1 (IPR000073);NIAS_FLcDNA=J023064N24;Manual Curation=November 20%2C 2014;Literature_PMID=24616269,19542179;Oryzabase=523;TENOR=Os03t0203200-01;KEGG=Os03t0203200-01
Chr03	irgsp1_rep	five_prime_UTR	5422206	5422405	.	+	.	Parent=Os03t0203200-01
Chr03	irgsp1_rep	CDS	5422406	5422929	.	+	0	Parent=Os03t0203200-01
Chr03	irgsp1_rep	CDS	5423021	5423453	.	+	1	Parent=Os03t0203200-01
Chr03	irgsp1_rep	three_prime_UTR	5423454	5423780	.	+	.	Parent=Os03t0203200-01
Chr03	irgsp1_rep	mRNA	5422148	5426577	.	+	.	ID=Os03t0203200-02;Name=Os03t0203200-02;Locus_id=Os03g0203200;RAP-DB Gene Symbol Synonym(s)=D14%2C D88%2C D88/D14%2C qPPB3%2C HTD4;RAP-DB Gene Name Synonym(s)=Dwarf 14%2C Dwarf 88%2C Primary panicle branch number 3%2C high-tillering dwarf mutant 4;CGSNL Gene Symbol=D14;CGSNL Gene Name=DWARF KAMIKAWABUNWAI TILLERING;Oryzabase Gene Symbol Synonym(s)=d14(d10)%2C dwf13%2C d10%2C d14%2C D88%2C HTD2%2C OsD14%2C qPPB3%2C D88/D14%2C HTD4;Oryzabase Gene Name Synonym(s)=kamikawabunwai tillering dwarf%2C dwarf-14%2C DWARF14%2C dwarf 14%2C Dwarf 88%2C HIGH-TILLERING DWARF 2%2C Primary panicle branch number 3%2C high-tillering dwarf 4;Note=Esterase%2C Alpha/beta fold hydrolase superfamily protein%2C Regulation of panicle structure;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Biological Process: secondary shoot formation (GO:0010223),Biological Process: strigolactone biosynthetic process (GO:1901601);InterPro=Strigolactone esterase D14 family (IPR031143),Alpha/Beta hydrolase fold (IPR029058),Alpha/beta hydrolase fold-1 (IPR000073);Manual Curation=August 17%2C 2017;Literature_PMID=28787541,25079308;Oryzabase=523;Subcellular location=nucleus (GO:0005634) [mainly], cytoplasm (GO:0005737) [mainly], plasma membrane (GO:0005886)
Chr03	irgsp1_rep	five_prime_UTR	5422148	5422405	.	+	.	Parent=Os03t0203200-02
Chr03	irgsp1_rep	CDS	5422406	5422929	.	+	0	Parent=Os03t0203200-02
Chr03	irgsp1_rep	CDS	5423021	5423446	.	+	1	Parent=Os03t0203200-02
Chr03	irgsp1_rep	CDS	5425895	5425913	.	+	1	Parent=Os03t0203200-02
Chr03	irgsp1_rep	three_prime_UTR	5425914	5426577	.	+	.	Parent=Os03t0203200-02
Chr03	irgsp1_rep	mRNA	5433914	5440182	.	+	.	ID=Os03t0203700-01;Name=Os03t0203700-01;Locus_id=Os03g0203700;CGSNL Gene Symbol=ACA1;CGSNL Gene Name=CA2+-ATPASE 1;Oryzabase Gene Symbol Synonym(s)=osACA1%2C OsACA1%2C OsACA3%2C OsPM3ATP2;Oryzabase Gene Name Synonym(s)=Ca2+ P-Type ATPase 1;Note=Similar to Calcium-transporting ATPase 2%2C plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 2).;Transcript_evidence=AK100415 (DDBJ%2C Best hit);ORF_evidence=Q8L8A0 (UniProt);GO=Biological Process: ATP biosynthetic process (GO:0006754),Biological Process: cation transport (GO:0006812),Biological Process: metabolic process (GO:0008152),Biological Process: calcium ion transmembrane transport (GO:0070588),Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: calcium-transporting ATPase activity (GO:0005388),Molecular Function: calmodulin binding (GO:0005516),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C catalyzing transmembrane movement of substances (GO:0016820),Molecular Function: metal ion binding (GO:0046872);InterPro=ATPase%2C P-type%2C H+ transporting proton pump (IPR000695),ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),ATPase%2C P-type cation-transporter%2C N-terminal (IPR004014),Haloacid dehalogenase-like hydrolase (IPR005834),ATPase%2C P-type cation-transporter%2C C-terminal (IPR006068),ATPase%2C P-type%2C calcium-transporting%2C PMCA-type (IPR006408),ATPase%2C P-type%2C ATPase-associated domain (IPR008250),ATPase%2C P-type phosphorylation site (IPR018303),HAD-like domain (IPR023214),ATPase%2C P-type%2C  transmembrane domain (IPR023298),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C  P-type%2C cytoplasmic transduction domain A (IPR023300),ATPase%2C cation-transporting%2C domain N (IPR023306),Calcium-transporting ATPase%2C N-terminal autoinhibitory domain (IPR024750);NIAS_FLcDNA=J023087M18;Oryzabase=13233;Expression=AK100415;TENOR=Os03t0203700-01;KEGG=Os03t0203700-01 (EC:3.6.3.8)
Chr03	irgsp1_rep	five_prime_UTR	5433914	5434292	.	+	.	Parent=Os03t0203700-01
Chr03	irgsp1_rep	CDS	5434293	5434469	.	+	0	Parent=Os03t0203700-01
Chr03	irgsp1_rep	CDS	5436018	5436072	.	+	0	Parent=Os03t0203700-01
Chr03	irgsp1_rep	CDS	5436178	5438129	.	+	2	Parent=Os03t0203700-01
Chr03	irgsp1_rep	CDS	5438214	5438372	.	+	0	Parent=Os03t0203700-01
Chr03	irgsp1_rep	CDS	5438585	5438756	.	+	0	Parent=Os03t0203700-01
Chr03	irgsp1_rep	CDS	5439121	5439419	.	+	2	Parent=Os03t0203700-01
Chr03	irgsp1_rep	CDS	5439651	5439896	.	+	0	Parent=Os03t0203700-01
Chr03	irgsp1_rep	three_prime_UTR	5439897	5440182	.	+	.	Parent=Os03t0203700-01
Chr03	irgsp1_rep	mRNA	5434232	5440324	.	+	.	ID=Os03t0203700-02;Name=Os03t0203700-02;Locus_id=Os03g0203700;CGSNL Gene Symbol=ACA1;CGSNL Gene Name=CA2+-ATPASE 1;Oryzabase Gene Symbol Synonym(s)=osACA1%2C OsACA1%2C OsACA3%2C OsPM3ATP2;Oryzabase Gene Name Synonym(s)=Ca2+ P-Type ATPase 1;Note=Similar to Calcium-transporting ATPase 2%2C plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 2).;Transcript_evidence=AK121250 (DDBJ%2C Best hit);ORF_evidence=Q8L8A0 (UniProt);GO=Biological Process: ATP biosynthetic process (GO:0006754),Biological Process: cation transport (GO:0006812),Biological Process: metabolic process (GO:0008152),Biological Process: calcium ion transmembrane transport (GO:0070588),Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: calcium-transporting ATPase activity (GO:0005388),Molecular Function: calmodulin binding (GO:0005516),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C catalyzing transmembrane movement of substances (GO:0016820),Molecular Function: metal ion binding (GO:0046872);InterPro=ATPase%2C P-type%2C H+ transporting proton pump (IPR000695),ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),ATPase%2C P-type cation-transporter%2C N-terminal (IPR004014),Haloacid dehalogenase-like hydrolase (IPR005834),ATPase%2C P-type cation-transporter%2C C-terminal (IPR006068),ATPase%2C P-type%2C calcium-transporting%2C PMCA-type (IPR006408),ATPase%2C P-type%2C ATPase-associated domain (IPR008250),ATPase%2C P-type phosphorylation site (IPR018303),HAD-like domain (IPR023214),ATPase%2C P-type%2C  transmembrane domain (IPR023298),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C  P-type%2C cytoplasmic transduction domain A (IPR023300),ATPase%2C cation-transporting%2C domain N (IPR023306),Calcium-transporting ATPase%2C N-terminal autoinhibitory domain (IPR024750);NIAS_FLcDNA=J023101G05;Oryzabase=13233;Expression=AK121250;TENOR=Os03t0203700-02;KEGG=Os03t0203700-02 (EC:3.6.3.8)
Chr03	irgsp1_rep	five_prime_UTR	5434232	5434292	.	+	.	Parent=Os03t0203700-02
Chr03	irgsp1_rep	CDS	5434293	5434469	.	+	0	Parent=Os03t0203700-02
Chr03	irgsp1_rep	CDS	5436018	5436072	.	+	0	Parent=Os03t0203700-02
Chr03	irgsp1_rep	CDS	5436178	5438129	.	+	2	Parent=Os03t0203700-02
Chr03	irgsp1_rep	CDS	5438214	5438372	.	+	0	Parent=Os03t0203700-02
Chr03	irgsp1_rep	CDS	5438585	5438756	.	+	0	Parent=Os03t0203700-02
Chr03	irgsp1_rep	CDS	5439121	5439419	.	+	2	Parent=Os03t0203700-02
Chr03	irgsp1_rep	CDS	5439651	5439896	.	+	0	Parent=Os03t0203700-02
Chr03	irgsp1_rep	three_prime_UTR	5439897	5440324	.	+	.	Parent=Os03t0203700-02
Chr03	irgsp1_rep	mRNA	5438603	5439236	.	-	.	ID=Os03t0203750-00;Name=Os03t0203750-00;Locus_id=Os03g0203750;Note=Non-protein coding transcript.;Transcript_evidence=EU971904 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0203750-00
Chr03	irgsp1_rep	exon	5439030	5439236	.	-	.	Parent=Os03t0203750-00
Chr03	irgsp1_rep	exon	5438603	5438789	.	-	.	Parent=Os03t0203750-00
Chr03	irgsp1_rep	mRNA	5441845	5444188	.	-	.	ID=Os03t0203800-01;Name=Os03t0203800-01;Locus_id=Os03g0203800;CGSNL Gene Symbol=CYCD5%3B3;CGSNL Gene Name=D-TYPE CYCLIN 5%3B3;Oryzabase Gene Symbol Synonym(s)=CycD5%3B3%2C CYCD5-3%2C Orysa%3BCycD5%3B3%2C Orysa%3BCYCD5%3B3;Oryzabase Gene Name Synonym(s)=Cyclin-D5-3%2C G1/S-specific cyclin-D5-3;Note=Cyclin D domain containing protein.;Transcript_evidence=AK070370 (DDBJ%2C Best hit);ORF_evidence=Q10QA2 (UniProt);GO=Cellular Component: nucleus (GO:0005634);InterPro=Cyclin%2C C-terminal (IPR004367),Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763);NIAS_FLcDNA=J023049F22;Oryzabase=7154;Expression=AK070370;TENOR=Os03t0203800-01;KEGG=Os03t0203800-01
Chr03	irgsp1_rep	five_prime_UTR	5443917	5444188	.	-	.	Parent=Os03t0203800-01
Chr03	irgsp1_rep	CDS	5443590	5443916	.	-	0	Parent=Os03t0203800-01
Chr03	irgsp1_rep	CDS	5443359	5443445	.	-	0	Parent=Os03t0203800-01
Chr03	irgsp1_rep	CDS	5442944	5443226	.	-	0	Parent=Os03t0203800-01
Chr03	irgsp1_rep	CDS	5442732	5442865	.	-	2	Parent=Os03t0203800-01
Chr03	irgsp1_rep	CDS	5442414	5442620	.	-	0	Parent=Os03t0203800-01
Chr03	irgsp1_rep	three_prime_UTR	5441845	5442413	.	-	.	Parent=Os03t0203800-01
Chr03	irgsp1_rep	mRNA	5458099	5462322	.	+	.	ID=Os03t0204100-01;Name=Os03t0204100-01;Locus_id=Os03g0204100;Oryzabase Gene Symbol Synonym(s)=OsFH8%2C FH8;Oryzabase Gene Name Synonym(s)=formin homology 8%2C forming family protein 8%2C FH2 protein 8%2C FH2 domain protein 8;Note=Actin-binding FH2 domain containing protein.;Transcript_evidence=AK121042 (DDBJ%2C Best hit);ORF_evidence=Q10Q99 (UniProt);GO=Biological Process: cellular component organization (GO:0016043),Biological Process: actin cytoskeleton organization (GO:0030036),Molecular Function: actin binding (GO:0003779);InterPro=Actin-binding FH2/DRF autoregulatory (IPR003104),Actin-binding FH2 (IPR015425);NIAS_FLcDNA=J023052I24;Oryzabase=21779;Expression=AK121042;TENOR=Os03t0204100-01;KEGG=Os03t0204100-01
Chr03	irgsp1_rep	five_prime_UTR	5458099	5458225	.	+	.	Parent=Os03t0204100-01
Chr03	irgsp1_rep	CDS	5458226	5459673	.	+	0	Parent=Os03t0204100-01
Chr03	irgsp1_rep	CDS	5459763	5459968	.	+	1	Parent=Os03t0204100-01
Chr03	irgsp1_rep	CDS	5460949	5461190	.	+	2	Parent=Os03t0204100-01
Chr03	irgsp1_rep	CDS	5461292	5462074	.	+	0	Parent=Os03t0204100-01
Chr03	irgsp1_rep	three_prime_UTR	5462075	5462322	.	+	.	Parent=Os03t0204100-01
Chr03	irgsp1_rep	mRNA	5466785	5468445	.	-	.	ID=Os03t0204300-01;Name=Os03t0204300-01;Locus_id=Os03g0204300;Note=Conserved hypothetical protein.;Transcript_evidence=AK243647 (DDBJ%2C Best hit);ORF_evidence=NP_001173306.1 (RefSeq);NIAS_FLcDNA=J100088E01;TENOR=Os03t0204300-01;KEGG=Os03t0204300-01
Chr03	irgsp1_rep	five_prime_UTR	5467429	5468445	.	-	.	Parent=Os03t0204300-01
Chr03	irgsp1_rep	CDS	5467087	5467428	.	-	0	Parent=Os03t0204300-01
Chr03	irgsp1_rep	three_prime_UTR	5466785	5467086	.	-	.	Parent=Os03t0204300-01
Chr03	irgsp1_rep	mRNA	5467138	5467740	.	+	.	ID=Os03t0204366-00;Name=Os03t0204366-00;Locus_id=Os03g0204366;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001172855.1 (RefSeq);TENOR=Os03t0204366-00
Chr03	irgsp1_rep	CDS	5467138	5467740	.	+	0	Parent=Os03t0204366-00
Chr03	irgsp1_rep	mRNA	5472719	5472939	.	-	.	ID=Os03t0204432-00;Name=Os03t0204432-00;Locus_id=Os03g0204432;Note=Non-protein coding transcript.;Transcript_evidence=AF190302 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0204432-00
Chr03	irgsp1_rep	exon	5472907	5472939	.	-	.	Parent=Os03t0204432-00
Chr03	irgsp1_rep	exon	5472719	5472820	.	-	.	Parent=Os03t0204432-00
Chr03	irgsp1_rep	mRNA	5474355	5474766	.	-	.	ID=Os03t0204500-00;Name=Os03t0204500-00;Locus_id=Os03g0204500;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001173307.1 (RefSeq);TENOR=Os03t0204500-00;KEGG=Os03t0204500-00
Chr03	irgsp1_rep	CDS	5474738	5474766	.	-	0	Parent=Os03t0204500-00
Chr03	irgsp1_rep	CDS	5474355	5474646	.	-	1	Parent=Os03t0204500-00
Chr03	irgsp1_rep	mRNA	5476440	5477287	.	+	.	ID=Os03t0204600-00;Name=Os03t0204600-00;Locus_id=Os03g0204600;Note=Conserved hypothetical protein.;Transcript_evidence=AK369551 (DDBJ);ORF_evidence=A2ZQ28 (UniProt);TENOR=Os03t0204600-00
Chr03	irgsp1_rep	CDS	5476440	5477126	.	+	0	Parent=Os03t0204600-00
Chr03	irgsp1_rep	three_prime_UTR	5477127	5477287	.	+	.	Parent=Os03t0204600-00
Chr03	irgsp1_rep	mRNA	5481504	5482358	.	-	.	ID=Os03t0204900-01;Name=Os03t0204900-01;Locus_id=Os03g0204900;Note=Conserved hypothetical protein.;Transcript_evidence=AK062601 (DDBJ%2C Best hit);ORF_evidence=A3AF92 (UniProt);NIAS_FLcDNA=001-103-D06;TENOR=Os03t0204900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	5482235	5482358	.	-	.	Parent=Os03t0204900-01
Chr03	irgsp1_rep	CDS	5482206	5482234	.	-	0	Parent=Os03t0204900-01
Chr03	irgsp1_rep	CDS	5481817	5482123	.	-	1	Parent=Os03t0204900-01
Chr03	irgsp1_rep	three_prime_UTR	5481504	5481816	.	-	.	Parent=Os03t0204900-01
Chr03	irgsp1_rep	mRNA	5483405	5489241	.	-	.	ID=Os03t0205000-01;Name=Os03t0205000-01;Locus_id=Os03g0205000;RAP-DB Gene Symbol Synonym(s)=SPL35;RAP-DB Gene Name Synonym(s)=spotted leaf 35;CGSNL Gene Symbol=SPL35;CGSNL Gene Name=SPOTTED LEAF 35;Oryzabase Gene Symbol Synonym(s)=OsSPL35;Oryzabase Gene Name Synonym(s)=spotted leaf 35;Note=CUE (coupling of ubiquitin conjugation to ER degradation) domain-containing protein%2C Regulation of cell death and defense response;Transcript_evidence=AK069442;ORF_evidence=Q10Q92;GO=Molecular Function: protein binding (GO:0005515);InterPro=UBA-like superfamily (IPR009060),Ubiquitin system component Cue (IPR003892);NIAS_FLcDNA=J023025N13;Manual Curation=February 20%2C 2019;Literature_PMID=30771255;Oryzabase=23033;Expression=AK069442;TENOR=Os03t0205000-01;KEGG=Os03t0205000-01;Subcellular location=cytosol (GO:0005829), endoplasmic reticulum (GO:0005783)
Chr03	irgsp1_rep	five_prime_UTR	5489148	5489241	.	-	.	Parent=Os03t0205000-01
Chr03	irgsp1_rep	CDS	5488751	5489147	.	-	0	Parent=Os03t0205000-01
Chr03	irgsp1_rep	CDS	5487902	5488061	.	-	2	Parent=Os03t0205000-01
Chr03	irgsp1_rep	CDS	5487726	5487787	.	-	1	Parent=Os03t0205000-01
Chr03	irgsp1_rep	CDS	5487521	5487615	.	-	2	Parent=Os03t0205000-01
Chr03	irgsp1_rep	CDS	5487227	5487340	.	-	0	Parent=Os03t0205000-01
Chr03	irgsp1_rep	CDS	5486640	5486703	.	-	0	Parent=Os03t0205000-01
Chr03	irgsp1_rep	CDS	5486453	5486549	.	-	2	Parent=Os03t0205000-01
Chr03	irgsp1_rep	CDS	5485943	5486370	.	-	1	Parent=Os03t0205000-01
Chr03	irgsp1_rep	CDS	5483641	5485007	.	-	2	Parent=Os03t0205000-01
Chr03	irgsp1_rep	three_prime_UTR	5483405	5483640	.	-	.	Parent=Os03t0205000-01
Chr03	irgsp1_rep	mRNA	5491325	5494409	.	-	.	ID=Os03t0205150-01;Name=Os03t0205150-01;Locus_id=Os03g0205150;Note=Hypothetical conserved gene.;Transcript_evidence=AK241595 (DDBJ%2C Best hit),AK241577 (DDBJ%2C Best hit);ORF_evidence=B9F623 (UniProt);NIAS_FLcDNA=J065183D02,J065181C03;TENOR=Os03t0205150-01;KEGG=Os03t0205150-01
Chr03	irgsp1_rep	five_prime_UTR	5494217	5494409	.	-	.	Parent=Os03t0205150-01
Chr03	irgsp1_rep	CDS	5494216	5494216	.	-	0	Parent=Os03t0205150-01
Chr03	irgsp1_rep	CDS	5493316	5493373	.	-	2	Parent=Os03t0205150-01
Chr03	irgsp1_rep	CDS	5493171	5493243	.	-	1	Parent=Os03t0205150-01
Chr03	irgsp1_rep	CDS	5493008	5493073	.	-	0	Parent=Os03t0205150-01
Chr03	irgsp1_rep	CDS	5491814	5491882	.	-	0	Parent=Os03t0205150-01
Chr03	irgsp1_rep	three_prime_UTR	5491325	5491813	.	-	.	Parent=Os03t0205150-01
Chr03	irgsp1_rep	mRNA	5495851	5497269	.	-	.	ID=Os03t0205300-00;Name=Os03t0205300-00;Locus_id=Os03g0205300;Oryzabase Gene Symbol Synonym(s)=OsbHLH129%2C bHLH129%2C OsRSL4%2C RSL4%2C DLN79%2C OsDLN79;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 129%2C ROOT HAIR DEFECTIVE-SIX LIKE 4%2C DLN repressor 79%2C DLN motif protein 79;Note=Similar to Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10Q90 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355);InterPro=Helix-loop-helix DNA-binding (IPR011598),Basic helix-loop-helix leucine zipper transcription factor (IPR024097),Basic helix-loop-helix leucine zipper transcription factor%2C plant (IPR024102);Oryzabase=15407;TENOR=Os03t0205300-00
Chr03	irgsp1_rep	CDS	5496772	5497269	.	-	0	Parent=Os03t0205300-00
Chr03	irgsp1_rep	CDS	5496390	5496686	.	-	0	Parent=Os03t0205300-00
Chr03	irgsp1_rep	CDS	5496240	5496305	.	-	0	Parent=Os03t0205300-00
Chr03	irgsp1_rep	CDS	5496061	5496126	.	-	0	Parent=Os03t0205300-00
Chr03	irgsp1_rep	CDS	5495851	5495949	.	-	0	Parent=Os03t0205300-00
Chr03	irgsp1_rep	mRNA	5508753	5516754	.	+	.	ID=Os03t0205400-00;Name=Os03t0205400-00;Locus_id=Os03g0205400;Note=Similar to XPG I-region family protein%2C expressed.;Transcript_evidence=AK376826 (DDBJ);ORF_evidence=Q10Q89 (UniProt);GO=Biological Process: DNA repair (GO:0006281),Biological Process: nucleotide-excision repair (GO:0006289),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: single-stranded DNA binding (GO:0003697),Molecular Function: catalytic activity (GO:0003824),Molecular Function: nuclease activity (GO:0004518),Molecular Function: endonuclease activity (GO:0004519),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Xeroderma pigmentosum group G protein (IPR001044),DNA repair protein (XPGC)/yeast Rad (IPR006084),XPG N-terminal (IPR006085),XPG/RAD2 endonuclease (IPR006086),Helix-hairpin-helix motif%2C class 2 (IPR008918),XPG conserved site (IPR019974),5'-3' exonuclease%2C C-terminal domain (IPR020045);TENOR=Os03t0205400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	5508753	5508791	.	+	.	Parent=Os03t0205400-00
Chr03	irgsp1_rep	CDS	5508792	5509130	.	+	0	Parent=Os03t0205400-00
Chr03	irgsp1_rep	CDS	5509978	5510174	.	+	0	Parent=Os03t0205400-00
Chr03	irgsp1_rep	CDS	5510254	5510389	.	+	1	Parent=Os03t0205400-00
Chr03	irgsp1_rep	CDS	5510559	5510636	.	+	0	Parent=Os03t0205400-00
Chr03	irgsp1_rep	CDS	5510731	5510784	.	+	0	Parent=Os03t0205400-00
Chr03	irgsp1_rep	CDS	5510970	5511154	.	+	0	Parent=Os03t0205400-00
Chr03	irgsp1_rep	CDS	5511285	5512878	.	+	1	Parent=Os03t0205400-00
Chr03	irgsp1_rep	CDS	5513010	5513204	.	+	0	Parent=Os03t0205400-00
Chr03	irgsp1_rep	CDS	5513323	5513408	.	+	0	Parent=Os03t0205400-00
Chr03	irgsp1_rep	CDS	5513717	5513990	.	+	1	Parent=Os03t0205400-00
Chr03	irgsp1_rep	CDS	5514101	5514237	.	+	0	Parent=Os03t0205400-00
Chr03	irgsp1_rep	CDS	5514748	5514832	.	+	1	Parent=Os03t0205400-00
Chr03	irgsp1_rep	CDS	5515277	5515769	.	+	0	Parent=Os03t0205400-00
Chr03	irgsp1_rep	CDS	5516067	5516071	.	+	2	Parent=Os03t0205400-00
Chr03	irgsp1_rep	three_prime_UTR	5516072	5516754	.	+	.	Parent=Os03t0205400-00
Chr03	irgsp1_rep	mRNA	5517532	5522391	.	+	.	ID=Os03t0205500-01;Name=Os03t0205500-01;Locus_id=Os03g0205500;Note=Similar to fiber protein Fb38.;Transcript_evidence=AK287752 (DDBJ%2C Best hit);ORF_evidence=NP_001152719.1 (RefSeq);GO=Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome b5 (IPR001199);NIAS_FLcDNA=J065156P08;TENOR=Os03t0205500-01;KEGG=Os03t0205500-01
Chr03	irgsp1_rep	five_prime_UTR	5517532	5517593	.	+	.	Parent=Os03t0205500-01
Chr03	irgsp1_rep	CDS	5517594	5517683	.	+	0	Parent=Os03t0205500-01
Chr03	irgsp1_rep	CDS	5518188	5518264	.	+	0	Parent=Os03t0205500-01
Chr03	irgsp1_rep	CDS	5518570	5518641	.	+	1	Parent=Os03t0205500-01
Chr03	irgsp1_rep	CDS	5518812	5518849	.	+	1	Parent=Os03t0205500-01
Chr03	irgsp1_rep	CDS	5519450	5519493	.	+	2	Parent=Os03t0205500-01
Chr03	irgsp1_rep	CDS	5520144	5520190	.	+	0	Parent=Os03t0205500-01
Chr03	irgsp1_rep	CDS	5520514	5520688	.	+	1	Parent=Os03t0205500-01
Chr03	irgsp1_rep	CDS	5522005	5522175	.	+	0	Parent=Os03t0205500-01
Chr03	irgsp1_rep	three_prime_UTR	5522176	5522391	.	+	.	Parent=Os03t0205500-01
Chr03	irgsp1_rep	mRNA	5530670	5534198	.	+	.	ID=Os03t0205700-01;Name=Os03t0205700-01;Locus_id=Os03g0205700;Note=BTB domain containing protein.;Transcript_evidence=AK103674 (DDBJ%2C Best hit);ORF_evidence=NP_001151545.1 (RefSeq);GO=Biological Process: response to light stimulus (GO:0009416),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),NPH3 (IPR004249),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069);NIAS_FLcDNA=J033136A15;Expression=AK103674;TENOR=Os03t0205700-01;KEGG=Os03t0205700-01
Chr03	irgsp1_rep	five_prime_UTR	5530670	5531141	.	+	.	Parent=Os03t0205700-01
Chr03	irgsp1_rep	CDS	5531142	5531203	.	+	0	Parent=Os03t0205700-01
Chr03	irgsp1_rep	CDS	5531625	5531694	.	+	1	Parent=Os03t0205700-01
Chr03	irgsp1_rep	CDS	5532055	5533215	.	+	0	Parent=Os03t0205700-01
Chr03	irgsp1_rep	CDS	5533444	5533968	.	+	0	Parent=Os03t0205700-01
Chr03	irgsp1_rep	three_prime_UTR	5533969	5534198	.	+	.	Parent=Os03t0205700-01
Chr03	irgsp1_rep	mRNA	5531021	5534319	.	+	.	ID=Os03t0205700-02;Name=Os03t0205700-02;Locus_id=Os03g0205700;Note=Photoreceptor-interacting protein-like.;Transcript_evidence=AK105404 (DDBJ%2C Best hit);ORF_evidence=NP_001151545.1 (RefSeq);GO=Biological Process: response to light stimulus (GO:0009416),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),NPH3 (IPR004249),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069);NIAS_FLcDNA=001-123-E02;Expression=AK105404;TENOR=Os03t0205700-02;KEGG=Os03t0205700-02
Chr03	irgsp1_rep	five_prime_UTR	5531021	5531141	.	+	.	Parent=Os03t0205700-02
Chr03	irgsp1_rep	CDS	5531142	5531203	.	+	0	Parent=Os03t0205700-02
Chr03	irgsp1_rep	CDS	5531625	5531694	.	+	1	Parent=Os03t0205700-02
Chr03	irgsp1_rep	CDS	5532055	5533284	.	+	0	Parent=Os03t0205700-02
Chr03	irgsp1_rep	three_prime_UTR	5533285	5534319	.	+	.	Parent=Os03t0205700-02
Chr03	irgsp1_rep	mRNA	5538810	5540247	.	-	.	ID=Os03t0205800-00;Name=Os03t0205800-00;Locus_id=Os03g0205800;Note=Similar to Acetyltransferase%2C GNAT family protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10Q85 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: N-acetyltransferase activity (GO:0008080);InterPro=GCN5-related N-acetyltransferase (GNAT) domain (IPR000182),Acyl-CoA N-acyltransferase (IPR016181);TENOR=Os03t0205800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	5540053	5540247	.	-	0	Parent=Os03t0205800-00
Chr03	irgsp1_rep	CDS	5539803	5539960	.	-	0	Parent=Os03t0205800-00
Chr03	irgsp1_rep	CDS	5538810	5539674	.	-	1	Parent=Os03t0205800-00
Chr03	irgsp1_rep	mRNA	5547251	5547731	.	-	.	ID=Os03t0206100-01;Name=Os03t0206100-01;Locus_id=Os03g0206100;Note=Conserved hypothetical protein.;Transcript_evidence=AK242567 (DDBJ%2C Best hit);ORF_evidence=NP_001049317.2 (RefSeq);NIAS_FLcDNA=J090005M24;TENOR=Os03t0206100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	5547682	5547731	.	-	.	Parent=Os03t0206100-01
Chr03	irgsp1_rep	five_prime_UTR	5547578	5547591	.	-	.	Parent=Os03t0206100-01
Chr03	irgsp1_rep	CDS	5547413	5547577	.	-	0	Parent=Os03t0206100-01
Chr03	irgsp1_rep	three_prime_UTR	5547251	5547412	.	-	.	Parent=Os03t0206100-01
Chr03	irgsp1_rep	mRNA	5547117	5551963	.	+	.	ID=Os03t0206150-00;Name=Os03t0206150-00;Locus_id=Os03g0206150;Note=Hypothetical protein.;Transcript_evidence=tplb0054f13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0206150-00
Chr03	irgsp1_rep	five_prime_UTR	5547117	5547584	.	+	.	Parent=Os03t0206150-00
Chr03	irgsp1_rep	five_prime_UTR	5547669	5547778	.	+	.	Parent=Os03t0206150-00
Chr03	irgsp1_rep	five_prime_UTR	5548348	5548447	.	+	.	Parent=Os03t0206150-00
Chr03	irgsp1_rep	five_prime_UTR	5548535	5548660	.	+	.	Parent=Os03t0206150-00
Chr03	irgsp1_rep	five_prime_UTR	5548779	5548874	.	+	.	Parent=Os03t0206150-00
Chr03	irgsp1_rep	five_prime_UTR	5550527	5550990	.	+	.	Parent=Os03t0206150-00
Chr03	irgsp1_rep	CDS	5550991	5551665	.	+	0	Parent=Os03t0206150-00
Chr03	irgsp1_rep	three_prime_UTR	5551666	5551963	.	+	.	Parent=Os03t0206150-00
Chr03	irgsp1_rep	mRNA	5571692	5572760	.	-	.	ID=Os03t0206201-00;Name=Os03t0206201-00;Locus_id=Os03g0206201;Note=Similar to predicted protein.;Transcript_evidence=EU953990 (DDBJ);ORF_evidence=B9F630 (UniProt);TENOR=Os03t0206201-00;KEGG=Os03t0206201-00
Chr03	irgsp1_rep	five_prime_UTR	5572642	5572760	.	-	.	Parent=Os03t0206201-00
Chr03	irgsp1_rep	CDS	5572579	5572641	.	-	0	Parent=Os03t0206201-00
Chr03	irgsp1_rep	CDS	5571692	5571892	.	-	0	Parent=Os03t0206201-00
Chr03	irgsp1_rep	mRNA	5573373	5576434	.	-	.	ID=Os03t0206300-01;Name=Os03t0206300-01;Locus_id=Os03g0206300;CGSNL Gene Symbol=ISC35;CGSNL Gene Name=IRON-SULFUR CLUSTER PROTEIN 35;Oryzabase Gene Symbol Synonym(s)=OsISC35;Oryzabase Gene Name Synonym(s)=Iron-sulfur cluster protein 35;Note=Similar to augmenter of liver regeneration.;Transcript_evidence=AK102625 (DDBJ%2C Best hit);ORF_evidence=NP_001148317.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: thiol oxidase activity (GO:0016972);InterPro=Erv1/Alr (IPR006863),ERV/ALR sulphydryl oxidase (IPR017905);NIAS_FLcDNA=J033099I24;Oryzabase=13437;TENOR=Os03t0206300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	5576288	5576434	.	-	.	Parent=Os03t0206300-01
Chr03	irgsp1_rep	CDS	5576090	5576287	.	-	0	Parent=Os03t0206300-01
Chr03	irgsp1_rep	CDS	5575897	5575977	.	-	0	Parent=Os03t0206300-01
Chr03	irgsp1_rep	CDS	5575570	5575659	.	-	0	Parent=Os03t0206300-01
Chr03	irgsp1_rep	three_prime_UTR	5573954	5575569	.	-	.	Parent=Os03t0206300-01
Chr03	irgsp1_rep	three_prime_UTR	5573373	5573669	.	-	.	Parent=Os03t0206300-01
Chr03	irgsp1_rep	mRNA	5582059	5582713	.	-	.	ID=Os03t0206400-01;Name=Os03t0206400-01;Locus_id=Os03g0206400;Note=Conserved hypothetical protein.;Transcript_evidence=AK107011 (DDBJ%2C Best hit);ORF_evidence=A2XDQ7 (UniProt);NIAS_FLcDNA=002-120-F03;TENOR=Os03t0206400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	5582481	5582713	.	-	.	Parent=Os03t0206400-01
Chr03	irgsp1_rep	CDS	5582262	5582480	.	-	0	Parent=Os03t0206400-01
Chr03	irgsp1_rep	three_prime_UTR	5582059	5582261	.	-	.	Parent=Os03t0206400-01
Chr03	irgsp1_rep	mRNA	5582059	5582712	.	-	.	ID=Os03t0206400-02;Name=Os03t0206400-02;Locus_id=Os03g0206400;Note=Conserved hypothetical protein.;Transcript_evidence=AK066494 (DDBJ%2C Best hit);ORF_evidence=A2XDQ7 (UniProt);NIAS_FLcDNA=J013072H16;Expression=AK066494;TENOR=Os03t0206400-02;KEGG=Os03t0206400-02
Chr03	irgsp1_rep	five_prime_UTR	5582642	5582712	.	-	.	Parent=Os03t0206400-02
Chr03	irgsp1_rep	CDS	5582557	5582641	.	-	0	Parent=Os03t0206400-02
Chr03	irgsp1_rep	CDS	5582262	5582452	.	-	2	Parent=Os03t0206400-02
Chr03	irgsp1_rep	three_prime_UTR	5582059	5582261	.	-	.	Parent=Os03t0206400-02
Chr03	irgsp1_rep	mRNA	5586002	5588859	.	+	.	ID=Os03t0206600-01;Name=Os03t0206600-01;Locus_id=Os03g0206600;Note=Uncharacterised protein family UPF0497%2C trans-membrane plant domain containing protein.;Transcript_evidence=AK058618 (DDBJ%2C Best hit);ORF_evidence=F2EIJ0 (UniProt);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);NIAS_FLcDNA=001-018-B05;Expression=AK058618;TENOR=Os03t0206600-01;KEGG=Os03t0206600-01
Chr03	irgsp1_rep	five_prime_UTR	5586002	5586134	.	+	.	Parent=Os03t0206600-01
Chr03	irgsp1_rep	CDS	5586135	5586346	.	+	0	Parent=Os03t0206600-01
Chr03	irgsp1_rep	CDS	5587725	5587857	.	+	1	Parent=Os03t0206600-01
Chr03	irgsp1_rep	CDS	5588391	5588582	.	+	0	Parent=Os03t0206600-01
Chr03	irgsp1_rep	three_prime_UTR	5588583	5588859	.	+	.	Parent=Os03t0206600-01
Chr03	irgsp1_rep	mRNA	5589846	5592643	.	-	.	ID=Os03t0206700-00;Name=Os03t0206700-00;Locus_id=Os03g0206700;Note=BTB/POZ fold domain containing protein.;Transcript_evidence=BT053887 (DDBJ);ORF_evidence=NP_001152299.1 (RefSeq);GO=Biological Process: response to light stimulus (GO:0009416),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),NPH3 (IPR004249),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069);TENOR=Os03t0206700-00;KEGG=Os03t0206700-00
Chr03	irgsp1_rep	five_prime_UTR	5592462	5592643	.	-	.	Parent=Os03t0206700-00
Chr03	irgsp1_rep	CDS	5592409	5592461	.	-	0	Parent=Os03t0206700-00
Chr03	irgsp1_rep	CDS	5591994	5592063	.	-	1	Parent=Os03t0206700-00
Chr03	irgsp1_rep	CDS	5591266	5591892	.	-	0	Parent=Os03t0206700-00
Chr03	irgsp1_rep	CDS	5590601	5591167	.	-	0	Parent=Os03t0206700-00
Chr03	irgsp1_rep	CDS	5589944	5590507	.	-	0	Parent=Os03t0206700-00
Chr03	irgsp1_rep	three_prime_UTR	5589846	5589943	.	-	.	Parent=Os03t0206700-00
Chr03	irgsp1_rep	mRNA	5590068	5591830	.	+	.	ID=Os03t0206750-00;Name=Os03t0206750-00;Locus_id=Os03g0206750;Note=Hypothetical protein.;Transcript_evidence=BT060652 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0206750-00
Chr03	irgsp1_rep	five_prime_UTR	5590068	5590579	.	+	.	Parent=Os03t0206750-00
Chr03	irgsp1_rep	CDS	5590580	5591158	.	+	0	Parent=Os03t0206750-00
Chr03	irgsp1_rep	CDS	5591296	5591830	.	+	0	Parent=Os03t0206750-00
Chr03	irgsp1_rep	mRNA	5593822	5594320	.	-	.	ID=Os03t0206800-01;Name=Os03t0206800-01;Locus_id=Os03g0206800;Note=Hypothetical protein.;Transcript_evidence=AK111081 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-175-F04;Expression=AK111081;TENOR=Os03t0206800-01;KEGG=Os03t0206800-01
Chr03	irgsp1_rep	five_prime_UTR	5594225	5594320	.	-	.	Parent=Os03t0206800-01
Chr03	irgsp1_rep	CDS	5593979	5594224	.	-	0	Parent=Os03t0206800-01
Chr03	irgsp1_rep	three_prime_UTR	5593822	5593978	.	-	.	Parent=Os03t0206800-01
Chr03	irgsp1_rep	mRNA	5594051	5595994	.	+	.	ID=Os03t0206900-01;Name=Os03t0206900-01;Locus_id=Os03g0206900;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK108941 (DDBJ%2C Best hit);ORF_evidence=B6TJA7 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=002-153-B07;Expression=AK108941;TENOR=Os03t0206900-01;KEGG=Os03t0206900-01
Chr03	irgsp1_rep	five_prime_UTR	5594051	5594125	.	+	.	Parent=Os03t0206900-01
Chr03	irgsp1_rep	CDS	5594126	5594359	.	+	0	Parent=Os03t0206900-01
Chr03	irgsp1_rep	CDS	5595252	5595836	.	+	0	Parent=Os03t0206900-01
Chr03	irgsp1_rep	three_prime_UTR	5595837	5595994	.	+	.	Parent=Os03t0206900-01
Chr03	irgsp1_rep	mRNA	5609827	5612733	.	-	.	ID=Os03t0207200-01;Name=Os03t0207200-01;Locus_id=Os03g0207200;Note=Syntaxin 6%2C N-terminal domain containing protein.;Transcript_evidence=AK071256 (DDBJ%2C Best hit);ORF_evidence=Q8H066 (UniProt);GO=Biological Process: vesicle-mediated transport (GO:0016192),Biological Process: Golgi vesicle transport (GO:0048193),Cellular Component: membrane (GO:0016020);InterPro=t-SNARE (IPR010989),Syntaxin 6%2C N-terminal (IPR015260);NIAS_FLcDNA=J023082L22;Expression=AK071256;TENOR=Os03t0207200-01;KEGG=Os03t0207200-01
Chr03	irgsp1_rep	five_prime_UTR	5612686	5612733	.	-	.	Parent=Os03t0207200-01
Chr03	irgsp1_rep	CDS	5612609	5612685	.	-	0	Parent=Os03t0207200-01
Chr03	irgsp1_rep	CDS	5612354	5612510	.	-	1	Parent=Os03t0207200-01
Chr03	irgsp1_rep	CDS	5611220	5611867	.	-	0	Parent=Os03t0207200-01
Chr03	irgsp1_rep	CDS	5610933	5611116	.	-	0	Parent=Os03t0207200-01
Chr03	irgsp1_rep	CDS	5610399	5610427	.	-	2	Parent=Os03t0207200-01
Chr03	irgsp1_rep	three_prime_UTR	5609827	5610398	.	-	.	Parent=Os03t0207200-01
Chr03	irgsp1_rep	mRNA	5613333	5615437	.	-	.	ID=Os03t0207250-01;Name=Os03t0207250-01;Locus_id=Os03g0207250;CGSNL Gene Symbol=RPL51;CGSNL Gene Name=RIBOSOMAL PROTEIN L51;Oryzabase Gene Symbol Synonym(s)=OsRPL51;Oryzabase Gene Name Synonym(s)=ribosomal protein  L51%2C ribosomal protein large subunit 51;Note=Ribosomal protein/NADH  dehydrogenase domain domain containing protein.;Transcript_evidence=AK241743 (DDBJ%2C Best hit);ORF_evidence=B6T6X8 (UniProt);InterPro=Ribosomal protein/NADH dehydrogenase domain (IPR007741),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=J065201P12;Oryzabase=22209;TENOR=Os03t0207250-01;KEGG=Os03t0207250-01
Chr03	irgsp1_rep	five_prime_UTR	5615363	5615437	.	-	.	Parent=Os03t0207250-01
Chr03	irgsp1_rep	five_prime_UTR	5615228	5615285	.	-	.	Parent=Os03t0207250-01
Chr03	irgsp1_rep	CDS	5615148	5615227	.	-	0	Parent=Os03t0207250-01
Chr03	irgsp1_rep	CDS	5614460	5614566	.	-	1	Parent=Os03t0207250-01
Chr03	irgsp1_rep	CDS	5613591	5613763	.	-	2	Parent=Os03t0207250-01
Chr03	irgsp1_rep	three_prime_UTR	5613333	5613590	.	-	.	Parent=Os03t0207250-01
Chr03	irgsp1_rep	mRNA	5616064	5620692	.	-	.	ID=Os03t0207300-01;Name=Os03t0207300-01;Locus_id=Os03g0207300;RAP-DB Gene Symbol Synonym(s)=OsCK2&alpha%3B3%2C OsCK2alpha3;RAP-DB Gene Name Synonym(s)=casein kinase 2 alpha subunit 3;CGSNL Gene Symbol=CK2ALPHA3;Oryzabase Gene Symbol Synonym(s)=OsCK2alpha3%2C CK2alpha3%2C OsCKA2-3%2C CKA2-3;Oryzabase Gene Name Synonym(s)=casein kinase II alpha-subunit 3%2C CK2 alpha-subunit 3%2C CK2 alpha subunit 3;Note=Casein kinase 2 catalytic subunit%2C Casein kinase 2 alpha subunit%2C Modulation of phosphate homeostasis;Transcript_evidence=AK120259;ORF_evidence=Q10Q71;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),Protein kinase domain (IPR000719),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J013046C24;Manual Curation=March 13%2C 2020;Literature_PMID=32161109,25724641;Oryzabase=19296;Expression=AK120259;TENOR=Os03t0207300-01;KEGG=Os03t0207300-01 (EC:2.7.11.1);Subcellular location=endoplasmic reticulum (GO:0005783)
Chr03	irgsp1_rep	five_prime_UTR	5620463	5620692	.	-	.	Parent=Os03t0207300-01
Chr03	irgsp1_rep	CDS	5620377	5620462	.	-	0	Parent=Os03t0207300-01
Chr03	irgsp1_rep	CDS	5619390	5619519	.	-	1	Parent=Os03t0207300-01
Chr03	irgsp1_rep	CDS	5618723	5618917	.	-	0	Parent=Os03t0207300-01
Chr03	irgsp1_rep	CDS	5617739	5617896	.	-	0	Parent=Os03t0207300-01
Chr03	irgsp1_rep	CDS	5617215	5617305	.	-	1	Parent=Os03t0207300-01
Chr03	irgsp1_rep	CDS	5617027	5617092	.	-	0	Parent=Os03t0207300-01
Chr03	irgsp1_rep	CDS	5616809	5616891	.	-	0	Parent=Os03t0207300-01
Chr03	irgsp1_rep	CDS	5616641	5616704	.	-	1	Parent=Os03t0207300-01
Chr03	irgsp1_rep	CDS	5616472	5616540	.	-	0	Parent=Os03t0207300-01
Chr03	irgsp1_rep	CDS	5616282	5616338	.	-	0	Parent=Os03t0207300-01
Chr03	irgsp1_rep	three_prime_UTR	5616064	5616281	.	-	.	Parent=Os03t0207300-01
Chr03	irgsp1_rep	mRNA	5616064	5618830	.	-	.	ID=Os03t0207300-02;Name=Os03t0207300-02;Locus_id=Os03g0207300;CGSNL Gene Symbol=CK2ALPHA3;Oryzabase Gene Symbol Synonym(s)=OsCK2alpha3%2C CK2alpha3%2C OsCKA2-3%2C CKA2-3;Oryzabase Gene Name Synonym(s)=casein kinase II alpha-subunit 3%2C CK2 alpha-subunit 3%2C CK2 alpha subunit 3;Note=Similar to predicted protein.;Transcript_evidence=AK058359 (DDBJ%2C Best hit);ORF_evidence=B3TLM4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-014-F03;Oryzabase=19296;Expression=AK058359;TENOR=Os03t0207300-02;KEGG=Os03t0207300-02 (EC:2.7.11.1)
Chr03	irgsp1_rep	CDS	5618723	5618830	.	-	0	Parent=Os03t0207300-02
Chr03	irgsp1_rep	CDS	5617739	5617896	.	-	0	Parent=Os03t0207300-02
Chr03	irgsp1_rep	CDS	5617215	5617305	.	-	1	Parent=Os03t0207300-02
Chr03	irgsp1_rep	CDS	5617027	5617092	.	-	0	Parent=Os03t0207300-02
Chr03	irgsp1_rep	CDS	5616809	5616891	.	-	0	Parent=Os03t0207300-02
Chr03	irgsp1_rep	CDS	5616641	5616704	.	-	1	Parent=Os03t0207300-02
Chr03	irgsp1_rep	CDS	5616472	5616540	.	-	0	Parent=Os03t0207300-02
Chr03	irgsp1_rep	CDS	5616282	5616338	.	-	0	Parent=Os03t0207300-02
Chr03	irgsp1_rep	three_prime_UTR	5616064	5616281	.	-	.	Parent=Os03t0207300-02
Chr03	irgsp1_rep	mRNA	5625733	5627711	.	+	.	ID=Os03t0207400-01;Name=Os03t0207400-01;Locus_id=Os03g0207400;Oryzabase Gene Symbol Synonym(s)=OsPP2C29%2C PP2C29%2C OsPP46;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C29%2C protein phosphatase 2C 29%2C protein phosphatase 46;Note=Similar to Protein phosphatase 2C-like.;Transcript_evidence=AK072292 (DDBJ%2C Best hit);ORF_evidence=E4MYB6 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J023016C20;Oryzabase=17905;Expression=AK072292;TENOR=Os03t0207400-01;KEGG=Os03t0207400-01
Chr03	irgsp1_rep	five_prime_UTR	5625733	5625856	.	+	.	Parent=Os03t0207400-01
Chr03	irgsp1_rep	CDS	5625857	5626142	.	+	0	Parent=Os03t0207400-01
Chr03	irgsp1_rep	CDS	5626243	5626634	.	+	2	Parent=Os03t0207400-01
Chr03	irgsp1_rep	CDS	5626820	5627320	.	+	0	Parent=Os03t0207400-01
Chr03	irgsp1_rep	three_prime_UTR	5627321	5627711	.	+	.	Parent=Os03t0207400-01
Chr03	irgsp1_rep	mRNA	5629573	5633166	.	-	.	ID=Os03t0207475-00;Name=Os03t0207475-00;Locus_id=Os03g0207475;Note=Hypothetical gene.;Transcript_evidence=CT835193 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os03t0207475-00;KEGG=Os03t0207475-00
Chr03	irgsp1_rep	five_prime_UTR	5632951	5633166	.	-	.	Parent=Os03t0207475-00
Chr03	irgsp1_rep	CDS	5632828	5632950	.	-	0	Parent=Os03t0207475-00
Chr03	irgsp1_rep	CDS	5630809	5630913	.	-	0	Parent=Os03t0207475-00
Chr03	irgsp1_rep	three_prime_UTR	5630645	5630808	.	-	.	Parent=Os03t0207475-00
Chr03	irgsp1_rep	three_prime_UTR	5630381	5630558	.	-	.	Parent=Os03t0207475-00
Chr03	irgsp1_rep	three_prime_UTR	5629899	5629974	.	-	.	Parent=Os03t0207475-00
Chr03	irgsp1_rep	three_prime_UTR	5629573	5629806	.	-	.	Parent=Os03t0207475-00
Chr03	irgsp1_rep	mRNA	5636938	5638605	.	+	.	ID=Os03t0207700-00;Name=Os03t0207700-00;Locus_id=Os03g0207700;Note=Similar to Ribonuclease.;Transcript_evidence=CT835199 (DDBJ%2C Best hit);ORF_evidence=A2ZBK3 (UniProt);TENOR=Os03t0207700-00;KEGG=Os03t0207700-00
Chr03	irgsp1_rep	five_prime_UTR	5636938	5636998	.	+	.	Parent=Os03t0207700-00
Chr03	irgsp1_rep	CDS	5636999	5637005	.	+	0	Parent=Os03t0207700-00
Chr03	irgsp1_rep	CDS	5637103	5637230	.	+	2	Parent=Os03t0207700-00
Chr03	irgsp1_rep	three_prime_UTR	5637231	5638605	.	+	.	Parent=Os03t0207700-00
Chr03	irgsp1_rep	mRNA	5641293	5643559	.	+	.	ID=Os03t0207800-00;Name=Os03t0207800-00;Locus_id=Os03g0207800;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8H061 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo-like helical (IPR011989),Tetratricopeptide-like helical (IPR011990),Armadillo-type fold (IPR016024),Tetratricopeptide repeat (IPR019734);TENOR=Os03t0207800-00
Chr03	irgsp1_rep	CDS	5641293	5643318	.	+	0	Parent=Os03t0207800-00
Chr03	irgsp1_rep	CDS	5643462	5643559	.	+	2	Parent=Os03t0207800-00
Chr03	irgsp1_rep	mRNA	5646348	5650212	.	-	.	ID=Os03t0207900-01;Name=Os03t0207900-01;Locus_id=Os03g0207900;Oryzabase Gene Symbol Synonym(s)=OsWD40-65;Note=WD-40 repeat containing protein.;Transcript_evidence=AK111713 (DDBJ%2C Best hit);ORF_evidence=B6SH81 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J023020E17;Oryzabase=10746;Expression=AK111713;TENOR=Os03t0207900-01;KEGG=Os03t0207900-01
Chr03	irgsp1_rep	five_prime_UTR	5649896	5650212	.	-	.	Parent=Os03t0207900-01
Chr03	irgsp1_rep	CDS	5649877	5649895	.	-	0	Parent=Os03t0207900-01
Chr03	irgsp1_rep	CDS	5649180	5649278	.	-	2	Parent=Os03t0207900-01
Chr03	irgsp1_rep	CDS	5647592	5648685	.	-	2	Parent=Os03t0207900-01
Chr03	irgsp1_rep	CDS	5647231	5647504	.	-	0	Parent=Os03t0207900-01
Chr03	irgsp1_rep	CDS	5646513	5646739	.	-	2	Parent=Os03t0207900-01
Chr03	irgsp1_rep	three_prime_UTR	5646348	5646512	.	-	.	Parent=Os03t0207900-01
Chr03	irgsp1_rep	mRNA	5647273	5650093	.	-	.	ID=Os03t0207900-02;Name=Os03t0207900-02;Locus_id=Os03g0207900;Oryzabase Gene Symbol Synonym(s)=OsWD40-65;Note=Similar to retinoblastoma-binding protein-like.;Transcript_evidence=AK111888 (DDBJ%2C Best hit);ORF_evidence=B6SH81 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J033074E21;Oryzabase=10746;TENOR=Os03t0207900-02
Chr03	irgsp1_rep	five_prime_UTR	5649896	5650093	.	-	.	Parent=Os03t0207900-02
Chr03	irgsp1_rep	CDS	5649877	5649895	.	-	0	Parent=Os03t0207900-02
Chr03	irgsp1_rep	CDS	5649180	5649278	.	-	2	Parent=Os03t0207900-02
Chr03	irgsp1_rep	CDS	5647592	5648685	.	-	2	Parent=Os03t0207900-02
Chr03	irgsp1_rep	CDS	5647273	5647504	.	-	0	Parent=Os03t0207900-02
Chr03	irgsp1_rep	mRNA	5655157	5659147	.	-	.	ID=Os03t0208500-01;Name=Os03t0208500-01;Locus_id=Os03g0208500;CGSNL Gene Symbol=NRAMP2;CGSNL Gene Name=BACTERIOCIDE EFFECT 2;Oryzabase Gene Symbol Synonym(s)=OsNramp2%2C OsNRAMP2;Oryzabase Gene Name Synonym(s)=homologues of mammalian Nramp2 gene;Note=Integral membrane protein.;Transcript_evidence=AK065481 (DDBJ%2C Best hit);ORF_evidence=Q10Q65 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Natural resistance-associated macrophage protein (IPR001046);NIAS_FLcDNA=J013007J10;Oryzabase=6244;Expression=AK065481;TENOR=Os03t0208500-01;KEGG=Os03t0208500-01
Chr03	irgsp1_rep	five_prime_UTR	5659116	5659147	.	-	.	Parent=Os03t0208500-01
Chr03	irgsp1_rep	CDS	5658538	5659115	.	-	0	Parent=Os03t0208500-01
Chr03	irgsp1_rep	CDS	5657010	5657146	.	-	1	Parent=Os03t0208500-01
Chr03	irgsp1_rep	CDS	5656262	5656914	.	-	2	Parent=Os03t0208500-01
Chr03	irgsp1_rep	CDS	5655557	5655763	.	-	0	Parent=Os03t0208500-01
Chr03	irgsp1_rep	three_prime_UTR	5655157	5655556	.	-	.	Parent=Os03t0208500-01
Chr03	irgsp1_rep	mRNA	5655206	5659172	.	-	.	ID=Os03t0208500-02;Name=Os03t0208500-02;Locus_id=Os03g0208500;RAP-DB Gene Symbol Synonym(s)=NRAMP2%2C OsNramp2%2C OsNRAMP2;RAP-DB Gene Name Synonym(s)=BACTERIOCIDE EFFECT 2%2C Oryza sativa natural resistance-associated macrophage protein 2%2C homologues of mammalian Nramp2 gene;CGSNL Gene Symbol=NRAMP2;CGSNL Gene Name=BACTERIOCIDE EFFECT 2;Oryzabase Gene Symbol Synonym(s)=OsNramp2%2C OsNRAMP2;Oryzabase Gene Name Synonym(s)=homologues of mammalian Nramp2 gene;Note=Integral membrane protein%2C Metal ion transport;Transcript_evidence=L81152 (Genbank);ORF_evidence=O24209 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Natural resistance-associated macrophage protein (IPR001046);Manual Curation=August 2%2C 2009;Literature_PMID=9154989;Oryzabase=6244
Chr03	irgsp1_rep	five_prime_UTR	5658936	5659172	.	-	.	Parent=Os03t0208500-02
Chr03	irgsp1_rep	CDS	5658538	5658935	.	-	0	Parent=Os03t0208500-02
Chr03	irgsp1_rep	CDS	5657010	5657146	.	-	1	Parent=Os03t0208500-02
Chr03	irgsp1_rep	CDS	5656262	5656914	.	-	2	Parent=Os03t0208500-02
Chr03	irgsp1_rep	CDS	5655557	5655763	.	-	0	Parent=Os03t0208500-02
Chr03	irgsp1_rep	three_prime_UTR	5655206	5655556	.	-	.	Parent=Os03t0208500-02
Chr03	irgsp1_rep	mRNA	5669927	5671969	.	+	.	ID=Os03t0208600-01;Name=Os03t0208600-01;Locus_id=Os03g0208600;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK107638 (DDBJ%2C Best hit);ORF_evidence=NP_171744.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-131-E11;Expression=AK107638;TENOR=Os03t0208600-01;KEGG=Os03t0208600-01
Chr03	irgsp1_rep	five_prime_UTR	5669927	5669974	.	+	.	Parent=Os03t0208600-01
Chr03	irgsp1_rep	CDS	5669975	5671570	.	+	0	Parent=Os03t0208600-01
Chr03	irgsp1_rep	three_prime_UTR	5671571	5671647	.	+	.	Parent=Os03t0208600-01
Chr03	irgsp1_rep	three_prime_UTR	5671741	5671969	.	+	.	Parent=Os03t0208600-01
Chr03	irgsp1_rep	mRNA	5672848	5675991	.	+	.	ID=Os03t0208700-00;Name=Os03t0208700-00;Locus_id=Os03g0208700;Note=Similar to cyclin-A2.;Transcript_evidence=BT085986 (DDBJ);ORF_evidence=NP_001147065.1 (RefSeq);GO=Cellular Component: nucleus (GO:0005634);InterPro=Cyclin%2C C-terminal (IPR004367),Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763);TENOR=Os03t0208700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	5672848	5673099	.	+	.	Parent=Os03t0208700-00
Chr03	irgsp1_rep	CDS	5673100	5673211	.	+	0	Parent=Os03t0208700-00
Chr03	irgsp1_rep	CDS	5673450	5673535	.	+	2	Parent=Os03t0208700-00
Chr03	irgsp1_rep	CDS	5673964	5674199	.	+	0	Parent=Os03t0208700-00
Chr03	irgsp1_rep	CDS	5674798	5674873	.	+	1	Parent=Os03t0208700-00
Chr03	irgsp1_rep	CDS	5674956	5675032	.	+	0	Parent=Os03t0208700-00
Chr03	irgsp1_rep	CDS	5675178	5675208	.	+	1	Parent=Os03t0208700-00
Chr03	irgsp1_rep	CDS	5675304	5675456	.	+	0	Parent=Os03t0208700-00
Chr03	irgsp1_rep	CDS	5675533	5675991	.	+	0	Parent=Os03t0208700-00
Chr03	irgsp1_rep	mRNA	5673111	5677868	.	-	.	ID=Os03t0208750-00;Name=Os03t0208750-00;Locus_id=Os03g0208750;Note=Hypothetical protein.;Transcript_evidence=EU960361 (DDBJ);ORF_evidence=GeneMark;TENOR=Os03t0208750-00
Chr03	irgsp1_rep	five_prime_UTR	5677868	5677868	.	-	.	Parent=Os03t0208750-00
Chr03	irgsp1_rep	CDS	5677759	5677867	.	-	0	Parent=Os03t0208750-00
Chr03	irgsp1_rep	CDS	5673310	5673416	.	-	2	Parent=Os03t0208750-00
Chr03	irgsp1_rep	three_prime_UTR	5673111	5673309	.	-	.	Parent=Os03t0208750-00
Chr03	irgsp1_rep	mRNA	5677791	5680026	.	+	.	ID=Os03t0208800-00;Name=Os03t0208800-00;Locus_id=Os03g0208800;Note=Cyclin%2C C-terminal domain containing protein.;Transcript_evidence=AK374906 (DDBJ);ORF_evidence=B9F640 (UniProt);GO=Biological Process: regulation of cyclin-dependent protein kinase activity (GO:0000079),Biological Process: regulation of cell cycle (GO:0051726),Cellular Component: nucleus (GO:0005634),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin%2C C-terminal (IPR004367),Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763),Cyclin A/B/D/E (IPR014400);TENOR=Os03t0208800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	5677791	5678183	.	+	0	Parent=Os03t0208800-00
Chr03	irgsp1_rep	CDS	5678731	5678960	.	+	0	Parent=Os03t0208800-00
Chr03	irgsp1_rep	CDS	5679055	5679130	.	+	1	Parent=Os03t0208800-00
Chr03	irgsp1_rep	CDS	5679211	5679287	.	+	0	Parent=Os03t0208800-00
Chr03	irgsp1_rep	CDS	5679466	5679496	.	+	1	Parent=Os03t0208800-00
Chr03	irgsp1_rep	CDS	5679564	5679716	.	+	0	Parent=Os03t0208800-00
Chr03	irgsp1_rep	CDS	5679793	5680026	.	+	0	Parent=Os03t0208800-00
Chr03	irgsp1_rep	mRNA	5680647	5685342	.	-	.	ID=Os03t0208900-01;Name=Os03t0208900-01;Locus_id=Os03g0208900;Oryzabase Gene Symbol Synonym(s)=OsMPG2;Oryzabase Gene Name Synonym(s)=mannose-1-phosphate guanyl transferase 2;Note=Similar to ADP-glucose pyrophosphorylase (Fragment).;Transcript_evidence=AK070806 (DDBJ%2C Best hit);ORF_evidence=B6TBA0 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=Bacterial transferase hexapeptide repeat (IPR001451),Nucleotidyl transferase (IPR005835);NIAS_FLcDNA=J023072C15;Oryzabase=11516;Expression=AK070806;TENOR=Os03t0208900-01;KEGG=Os03t0208900-01
Chr03	irgsp1_rep	five_prime_UTR	5685157	5685342	.	-	.	Parent=Os03t0208900-01
Chr03	irgsp1_rep	CDS	5685099	5685156	.	-	0	Parent=Os03t0208900-01
Chr03	irgsp1_rep	CDS	5684885	5684982	.	-	2	Parent=Os03t0208900-01
Chr03	irgsp1_rep	CDS	5684690	5684790	.	-	0	Parent=Os03t0208900-01
Chr03	irgsp1_rep	CDS	5684479	5684557	.	-	1	Parent=Os03t0208900-01
Chr03	irgsp1_rep	CDS	5684225	5684285	.	-	0	Parent=Os03t0208900-01
Chr03	irgsp1_rep	CDS	5684071	5684117	.	-	2	Parent=Os03t0208900-01
Chr03	irgsp1_rep	CDS	5683887	5683979	.	-	0	Parent=Os03t0208900-01
Chr03	irgsp1_rep	CDS	5683645	5683735	.	-	0	Parent=Os03t0208900-01
Chr03	irgsp1_rep	CDS	5683173	5683221	.	-	2	Parent=Os03t0208900-01
Chr03	irgsp1_rep	CDS	5682137	5682253	.	-	1	Parent=Os03t0208900-01
Chr03	irgsp1_rep	CDS	5681912	5682059	.	-	1	Parent=Os03t0208900-01
Chr03	irgsp1_rep	CDS	5681658	5681750	.	-	0	Parent=Os03t0208900-01
Chr03	irgsp1_rep	CDS	5681515	5681584	.	-	0	Parent=Os03t0208900-01
Chr03	irgsp1_rep	CDS	5681156	5681197	.	-	2	Parent=Os03t0208900-01
Chr03	irgsp1_rep	CDS	5680942	5681042	.	-	2	Parent=Os03t0208900-01
Chr03	irgsp1_rep	three_prime_UTR	5680647	5680941	.	-	.	Parent=Os03t0208900-01
Chr03	irgsp1_rep	mRNA	5686617	5687556	.	+	.	ID=Os03t0209000-01;Name=Os03t0209000-01;Locus_id=Os03g0209000;Note=Similar to MFP1 attachment factor 1.;Transcript_evidence=AK107769 (DDBJ%2C Best hit);ORF_evidence=B6SJL1 (UniProt);NIAS_FLcDNA=002-133-B05;Expression=AK107769;TENOR=Os03t0209000-01;KEGG=Os03t0209000-01
Chr03	irgsp1_rep	five_prime_UTR	5686617	5686838	.	+	.	Parent=Os03t0209000-01
Chr03	irgsp1_rep	CDS	5686839	5687306	.	+	0	Parent=Os03t0209000-01
Chr03	irgsp1_rep	three_prime_UTR	5687307	5687556	.	+	.	Parent=Os03t0209000-01
Chr03	irgsp1_rep	mRNA	5707404	5710078	.	+	.	ID=Os03t0209400-01;Name=Os03t0209400-01;Locus_id=Os03g0209400;RAP-DB Gene Symbol Synonym(s)=GOT1B%2C GLUP2/GOT1B%2C GPA4;RAP-DB Gene Name Synonym(s)=Golgi Transport 1%2C glutelin precursor accumulation4%2C GOLGI TRANSPORT 1B;CGSNL Gene Symbol=GPA4;CGSNL Gene Name=GLUTELIN PRECURSOR ACCUMULATION 4;Oryzabase Gene Symbol Synonym(s)=GOT1B%2C GLUP2;Oryzabase Gene Name Synonym(s)=glutelin precursor accumulation4%2C glutelin precursor accumulation%2C GOLGI TRANSPORT 1B;Note=Vesicle transport protein%2C Regulation of protein export from ER in developing endosperm cells;Transcript_evidence=AK059829;ORF_evidence=Q10Q55;GO=Biological Process: vesicle-mediated transport (GO:0016192);InterPro=Vesicle transport protein%2C Got1/SFT2-like (IPR007305);NIAS_FLcDNA=006-205-H12;Manual Curation=November 21%2C 2016;Literature_PMID=27565205,27803308;Oryzabase=21453;Expression=AK059829;TENOR=Os03t0209400-01;KEGG=Os03t0209400-01
Chr03	irgsp1_rep	five_prime_UTR	5707404	5707538	.	+	.	Parent=Os03t0209400-01
Chr03	irgsp1_rep	five_prime_UTR	5708116	5708165	.	+	.	Parent=Os03t0209400-01
Chr03	irgsp1_rep	CDS	5708166	5708196	.	+	0	Parent=Os03t0209400-01
Chr03	irgsp1_rep	CDS	5708755	5708846	.	+	2	Parent=Os03t0209400-01
Chr03	irgsp1_rep	CDS	5708939	5709019	.	+	0	Parent=Os03t0209400-01
Chr03	irgsp1_rep	CDS	5709100	5709197	.	+	0	Parent=Os03t0209400-01
Chr03	irgsp1_rep	CDS	5709378	5709459	.	+	1	Parent=Os03t0209400-01
Chr03	irgsp1_rep	CDS	5709556	5709594	.	+	0	Parent=Os03t0209400-01
Chr03	irgsp1_rep	three_prime_UTR	5709595	5710078	.	+	.	Parent=Os03t0209400-01
Chr03	irgsp1_rep	mRNA	5710240	5715009	.	-	.	ID=Os03t0209500-01;Name=Os03t0209500-01;Locus_id=Os03g0209500;Note=Zinc finger%2C DHHC-type domain containing protein.;Transcript_evidence=AK121902 (DDBJ%2C Best hit);ORF_evidence=B6SXJ3 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C DHHC-type%2C palmitoyltransferase (IPR001594);NIAS_FLcDNA=J033105H03;Expression=AK121902;TENOR=Os03t0209500-01;KEGG=Os03t0209500-01
Chr03	irgsp1_rep	five_prime_UTR	5714706	5715009	.	-	.	Parent=Os03t0209500-01
Chr03	irgsp1_rep	CDS	5714664	5714705	.	-	0	Parent=Os03t0209500-01
Chr03	irgsp1_rep	CDS	5714450	5714563	.	-	0	Parent=Os03t0209500-01
Chr03	irgsp1_rep	CDS	5713592	5713951	.	-	0	Parent=Os03t0209500-01
Chr03	irgsp1_rep	CDS	5713007	5713075	.	-	0	Parent=Os03t0209500-01
Chr03	irgsp1_rep	CDS	5712837	5712908	.	-	0	Parent=Os03t0209500-01
Chr03	irgsp1_rep	CDS	5712477	5712605	.	-	0	Parent=Os03t0209500-01
Chr03	irgsp1_rep	CDS	5712252	5712333	.	-	0	Parent=Os03t0209500-01
Chr03	irgsp1_rep	CDS	5711785	5711975	.	-	2	Parent=Os03t0209500-01
Chr03	irgsp1_rep	CDS	5710563	5711300	.	-	0	Parent=Os03t0209500-01
Chr03	irgsp1_rep	three_prime_UTR	5710240	5710562	.	-	.	Parent=Os03t0209500-01
Chr03	irgsp1_rep	mRNA	5721104	5728581	.	+	.	ID=Os03t0209600-01;Name=Os03t0209600-01;Locus_id=Os03g0209600;Note=Similar to MEtRS (EC 6.1.1.10).;Transcript_evidence=AK068726 (DDBJ%2C Best hit);ORF_evidence=NP_191100.1 (RefSeq);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: methionyl-tRNA aminoacylation (GO:0006431),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: methionine-tRNA ligase activity (GO:0004825),Molecular Function: ATP binding (GO:0005524);InterPro=Aminoacyl-tRNA synthetase%2C class 1a%2C anticodon-binding (IPR009080),Valyl/Leucyl/Isoleucyl-tRNA synthetase%2C class I%2C anticodon-binding (IPR013155),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Methionyl-tRNA synthetase (IPR014758),Aminoacyl-tRNA synthetase%2C class I (M) (IPR015413);NIAS_FLcDNA=J013160O09;Expression=AK068726;TENOR=Os03t0209600-01;KEGG=Os03t0209600-01 (EC:6.1.1.10)
Chr03	irgsp1_rep	five_prime_UTR	5721104	5721154	.	+	.	Parent=Os03t0209600-01
Chr03	irgsp1_rep	CDS	5721155	5721433	.	+	0	Parent=Os03t0209600-01
Chr03	irgsp1_rep	CDS	5721896	5722042	.	+	0	Parent=Os03t0209600-01
Chr03	irgsp1_rep	CDS	5722135	5722284	.	+	0	Parent=Os03t0209600-01
Chr03	irgsp1_rep	CDS	5722700	5722867	.	+	0	Parent=Os03t0209600-01
Chr03	irgsp1_rep	CDS	5723840	5723964	.	+	0	Parent=Os03t0209600-01
Chr03	irgsp1_rep	CDS	5724420	5724513	.	+	1	Parent=Os03t0209600-01
Chr03	irgsp1_rep	CDS	5725350	5725448	.	+	0	Parent=Os03t0209600-01
Chr03	irgsp1_rep	CDS	5726236	5726416	.	+	0	Parent=Os03t0209600-01
Chr03	irgsp1_rep	CDS	5726557	5726672	.	+	2	Parent=Os03t0209600-01
Chr03	irgsp1_rep	CDS	5727264	5727419	.	+	0	Parent=Os03t0209600-01
Chr03	irgsp1_rep	CDS	5727732	5727860	.	+	0	Parent=Os03t0209600-01
Chr03	irgsp1_rep	CDS	5728060	5728224	.	+	0	Parent=Os03t0209600-01
Chr03	irgsp1_rep	three_prime_UTR	5728225	5728581	.	+	.	Parent=Os03t0209600-01
Chr03	irgsp1_rep	mRNA	5722824	5728506	.	+	.	ID=Os03t0209600-02;Name=Os03t0209600-02;Locus_id=Os03g0209600;Note=Similar to predicted protein.;Transcript_evidence=AK059109 (DDBJ%2C Best hit);ORF_evidence=NP_191100.1 (RefSeq);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: methionyl-tRNA aminoacylation (GO:0006431),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: methionine-tRNA ligase activity (GO:0004825),Molecular Function: ATP binding (GO:0005524);InterPro=Aminoacyl-tRNA synthetase%2C class 1a%2C anticodon-binding (IPR009080),Valyl/Leucyl/Isoleucyl-tRNA synthetase%2C class I%2C anticodon-binding (IPR013155),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Methionyl-tRNA synthetase (IPR014758),Aminoacyl-tRNA synthetase%2C class I (M) (IPR015413);NIAS_FLcDNA=001-022-D12;Expression=AK059109;TENOR=Os03t0209600-02;KEGG=Os03t0209600-02 (EC:6.1.1.10)
Chr03	irgsp1_rep	five_prime_UTR	5722824	5722825	.	+	.	Parent=Os03t0209600-02
Chr03	irgsp1_rep	CDS	5722826	5722867	.	+	0	Parent=Os03t0209600-02
Chr03	irgsp1_rep	CDS	5723840	5723964	.	+	0	Parent=Os03t0209600-02
Chr03	irgsp1_rep	CDS	5724420	5724513	.	+	1	Parent=Os03t0209600-02
Chr03	irgsp1_rep	CDS	5725350	5725448	.	+	0	Parent=Os03t0209600-02
Chr03	irgsp1_rep	CDS	5726236	5726416	.	+	0	Parent=Os03t0209600-02
Chr03	irgsp1_rep	CDS	5726557	5726672	.	+	2	Parent=Os03t0209600-02
Chr03	irgsp1_rep	CDS	5727264	5727419	.	+	0	Parent=Os03t0209600-02
Chr03	irgsp1_rep	CDS	5727732	5727860	.	+	0	Parent=Os03t0209600-02
Chr03	irgsp1_rep	CDS	5728060	5728224	.	+	0	Parent=Os03t0209600-02
Chr03	irgsp1_rep	three_prime_UTR	5728225	5728506	.	+	.	Parent=Os03t0209600-02
Chr03	irgsp1_rep	mRNA	5729595	5732123	.	+	.	ID=Os03t0209700-00;Name=Os03t0209700-00;Locus_id=Os03g0209700;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3AFC5 (UniProt);TENOR=Os03t0209700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	5729595	5729751	.	+	0	Parent=Os03t0209700-00
Chr03	irgsp1_rep	CDS	5730489	5730562	.	+	2	Parent=Os03t0209700-00
Chr03	irgsp1_rep	CDS	5730723	5730802	.	+	0	Parent=Os03t0209700-00
Chr03	irgsp1_rep	CDS	5731523	5731674	.	+	1	Parent=Os03t0209700-00
Chr03	irgsp1_rep	CDS	5732053	5732123	.	+	2	Parent=Os03t0209700-00
Chr03	irgsp1_rep	mRNA	5735003	5746155	.	+	.	ID=Os03t0209800-01;Name=Os03t0209800-01;Locus_id=Os03g0209800;Oryzabase Gene Symbol Synonym(s)=Spin6.3;Note=RhoGAP domain containing protein.;Transcript_evidence=AK100680 (DDBJ%2C Best hit);ORF_evidence=Q10Q50 (UniProt);GO=Biological Process: signal transduction (GO:0007165),Cellular Component: intracellular (GO:0005622),Molecular Function: protein binding (GO:0005515);InterPro=Rho GTPase-activating protein domain (IPR000198),Pleckstrin homology domain (IPR001849),Rho GTPase activation protein (IPR008936),Pleckstrin homology-type (IPR011993);NIAS_FLcDNA=J023113J17;Oryzabase=20007;Expression=AK100680;TENOR=Os03t0209800-01;KEGG=Os03t0209800-01
Chr03	irgsp1_rep	five_prime_UTR	5735003	5735145	.	+	.	Parent=Os03t0209800-01
Chr03	irgsp1_rep	five_prime_UTR	5736028	5736151	.	+	.	Parent=Os03t0209800-01
Chr03	irgsp1_rep	five_prime_UTR	5736430	5736507	.	+	.	Parent=Os03t0209800-01
Chr03	irgsp1_rep	CDS	5736508	5736543	.	+	0	Parent=Os03t0209800-01
Chr03	irgsp1_rep	CDS	5737053	5737172	.	+	0	Parent=Os03t0209800-01
Chr03	irgsp1_rep	CDS	5737546	5737582	.	+	0	Parent=Os03t0209800-01
Chr03	irgsp1_rep	CDS	5738411	5738487	.	+	2	Parent=Os03t0209800-01
Chr03	irgsp1_rep	CDS	5739408	5739475	.	+	0	Parent=Os03t0209800-01
Chr03	irgsp1_rep	CDS	5739557	5739635	.	+	1	Parent=Os03t0209800-01
Chr03	irgsp1_rep	CDS	5739873	5740017	.	+	0	Parent=Os03t0209800-01
Chr03	irgsp1_rep	CDS	5740133	5740237	.	+	2	Parent=Os03t0209800-01
Chr03	irgsp1_rep	CDS	5740423	5740500	.	+	2	Parent=Os03t0209800-01
Chr03	irgsp1_rep	CDS	5740698	5740753	.	+	2	Parent=Os03t0209800-01
Chr03	irgsp1_rep	CDS	5740843	5740912	.	+	0	Parent=Os03t0209800-01
Chr03	irgsp1_rep	CDS	5741073	5741157	.	+	2	Parent=Os03t0209800-01
Chr03	irgsp1_rep	CDS	5741359	5741602	.	+	1	Parent=Os03t0209800-01
Chr03	irgsp1_rep	CDS	5741709	5741891	.	+	0	Parent=Os03t0209800-01
Chr03	irgsp1_rep	CDS	5742462	5742495	.	+	0	Parent=Os03t0209800-01
Chr03	irgsp1_rep	CDS	5742592	5742770	.	+	2	Parent=Os03t0209800-01
Chr03	irgsp1_rep	CDS	5742856	5742905	.	+	0	Parent=Os03t0209800-01
Chr03	irgsp1_rep	CDS	5743548	5743608	.	+	1	Parent=Os03t0209800-01
Chr03	irgsp1_rep	CDS	5743690	5743773	.	+	0	Parent=Os03t0209800-01
Chr03	irgsp1_rep	CDS	5743967	5744083	.	+	0	Parent=Os03t0209800-01
Chr03	irgsp1_rep	CDS	5744171	5744337	.	+	0	Parent=Os03t0209800-01
Chr03	irgsp1_rep	CDS	5744444	5744516	.	+	1	Parent=Os03t0209800-01
Chr03	irgsp1_rep	CDS	5745003	5745087	.	+	0	Parent=Os03t0209800-01
Chr03	irgsp1_rep	CDS	5745199	5745392	.	+	2	Parent=Os03t0209800-01
Chr03	irgsp1_rep	CDS	5745579	5745734	.	+	0	Parent=Os03t0209800-01
Chr03	irgsp1_rep	three_prime_UTR	5745735	5746155	.	+	.	Parent=Os03t0209800-01
Chr03	irgsp1_rep	mRNA	5749954	5750298	.	-	.	ID=Os03t0210000-00;Name=Os03t0210000-00;Locus_id=Os03g0210000;Note=Putative cysteine proteinase inhibitor 9.;Transcript_evidence=Q10Q48 (UniProt);ORF_evidence=Q10Q48 (UniProt);TENOR=Os03t0210000-00
Chr03	irgsp1_rep	CDS	5749954	5750298	.	-	0	Parent=Os03t0210000-00
Chr03	irgsp1_rep	mRNA	5751427	5751798	.	+	.	ID=Os03t0210050-00;Name=Os03t0210050-00;Locus_id=Os03g0210050;Note=Non-protein coding transcript.;Transcript_evidence=EU955068 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0210050-00
Chr03	irgsp1_rep	exon	5751427	5751798	.	+	.	Parent=Os03t0210050-00
Chr03	irgsp1_rep	mRNA	5753283	5753636	.	-	.	ID=Os03t0210100-00;Name=Os03t0210100-00;Locus_id=Os03g0210100;Note=Hypothetical conserved gene.;Transcript_evidence=Q10Q47 (UniProt);ORF_evidence=Q10Q47 (UniProt);GO=Molecular Function: cysteine-type endopeptidase inhibitor activity (GO:0004869);InterPro=Proteinase inhibitor I25%2C cystatin (IPR000010),Proteinase inhibitor I25%2C cystatin%2C conserved site (IPR018073),Proteinase inhibitor I25%2C cystatin%2C conserved region (IPR020381);TENOR=Os03t0210100-00
Chr03	irgsp1_rep	CDS	5753283	5753636	.	-	0	Parent=Os03t0210100-00
Chr03	irgsp1_rep	mRNA	5755354	5755913	.	-	.	ID=Os03t0210200-01;Name=Os03t0210200-01;Locus_id=Os03g0210200;Oryzabase Gene Name Synonym(s)=cystatin;Note=Similar to cystatin6.;Transcript_evidence=AK111138 (DDBJ%2C Best hit);ORF_evidence=NP_001105948.1 (RefSeq);GO=Molecular Function: cysteine-type endopeptidase inhibitor activity (GO:0004869);InterPro=Proteinase inhibitor I25%2C cystatin (IPR000010),Proteinase inhibitor I25%2C cystatin%2C conserved site (IPR018073),Proteinase inhibitor I25%2C cystatin%2C conserved region (IPR020381);NIAS_FLcDNA=002-176-D11;Oryzabase=12115;TENOR=Os03t0210200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	5755494	5755913	.	-	0	Parent=Os03t0210200-01
Chr03	irgsp1_rep	three_prime_UTR	5755354	5755493	.	-	.	Parent=Os03t0210200-01
Chr03	irgsp1_rep	mRNA	5758654	5759005	.	+	.	ID=Os03t0210350-00;Name=Os03t0210350-00;Locus_id=Os03g0210350;Note=Hypothetical gene.;Transcript_evidence=EU949298 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0210350-00;KEGG=Os03t0210350-00
Chr03	irgsp1_rep	five_prime_UTR	5758654	5758654	.	+	.	Parent=Os03t0210350-00
Chr03	irgsp1_rep	CDS	5758655	5759005	.	+	0	Parent=Os03t0210350-00
Chr03	irgsp1_rep	mRNA	5760848	5767440	.	-	.	ID=Os03t0210400-01;Name=Os03t0210400-01;Locus_id=Os03g0210400;Note=RNA-processing protein%2C HAT helix domain containing protein.;Transcript_evidence=AK065966 (DDBJ%2C Best hit);ORF_evidence=NP_563700.1 (RefSeq);GO=Biological Process: RNA processing (GO:0006396),Cellular Component: intracellular (GO:0005622),Molecular Function: binding (GO:0005488);InterPro=RNA-processing protein%2C HAT helix (IPR003107),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013047E12;Expression=AK065966;TENOR=Os03t0210400-01;KEGG=Os03t0210400-01
Chr03	irgsp1_rep	five_prime_UTR	5767283	5767440	.	-	.	Parent=Os03t0210400-01
Chr03	irgsp1_rep	five_prime_UTR	5767130	5767167	.	-	.	Parent=Os03t0210400-01
Chr03	irgsp1_rep	CDS	5766781	5767129	.	-	0	Parent=Os03t0210400-01
Chr03	irgsp1_rep	CDS	5766594	5766700	.	-	2	Parent=Os03t0210400-01
Chr03	irgsp1_rep	CDS	5765877	5766106	.	-	0	Parent=Os03t0210400-01
Chr03	irgsp1_rep	CDS	5765188	5765355	.	-	1	Parent=Os03t0210400-01
Chr03	irgsp1_rep	CDS	5764576	5764936	.	-	1	Parent=Os03t0210400-01
Chr03	irgsp1_rep	CDS	5763932	5764075	.	-	0	Parent=Os03t0210400-01
Chr03	irgsp1_rep	CDS	5763185	5763337	.	-	0	Parent=Os03t0210400-01
Chr03	irgsp1_rep	CDS	5762987	5763103	.	-	0	Parent=Os03t0210400-01
Chr03	irgsp1_rep	CDS	5762576	5762656	.	-	0	Parent=Os03t0210400-01
Chr03	irgsp1_rep	CDS	5762315	5762464	.	-	0	Parent=Os03t0210400-01
Chr03	irgsp1_rep	CDS	5761684	5761947	.	-	0	Parent=Os03t0210400-01
Chr03	irgsp1_rep	CDS	5761318	5761422	.	-	0	Parent=Os03t0210400-01
Chr03	irgsp1_rep	CDS	5761078	5761218	.	-	0	Parent=Os03t0210400-01
Chr03	irgsp1_rep	three_prime_UTR	5760848	5761077	.	-	.	Parent=Os03t0210400-01
Chr03	irgsp1_rep	mRNA	5761012	5764113	.	+	.	ID=Os03t0210450-00;Name=Os03t0210450-00;Locus_id=Os03g0210450;Note=Hypothetical gene.;Transcript_evidence=BT084513 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0210450-00;KEGG=Os03t0210450-00
Chr03	irgsp1_rep	five_prime_UTR	5761012	5761085	.	+	.	Parent=Os03t0210450-00
Chr03	irgsp1_rep	CDS	5761086	5761212	.	+	0	Parent=Os03t0210450-00
Chr03	irgsp1_rep	CDS	5761315	5761437	.	+	2	Parent=Os03t0210450-00
Chr03	irgsp1_rep	CDS	5761698	5761756	.	+	2	Parent=Os03t0210450-00
Chr03	irgsp1_rep	three_prime_UTR	5761757	5761949	.	+	.	Parent=Os03t0210450-00
Chr03	irgsp1_rep	three_prime_UTR	5762309	5762451	.	+	.	Parent=Os03t0210450-00
Chr03	irgsp1_rep	three_prime_UTR	5762562	5762644	.	+	.	Parent=Os03t0210450-00
Chr03	irgsp1_rep	three_prime_UTR	5762977	5763078	.	+	.	Parent=Os03t0210450-00
Chr03	irgsp1_rep	three_prime_UTR	5763185	5763337	.	+	.	Parent=Os03t0210450-00
Chr03	irgsp1_rep	three_prime_UTR	5763932	5764113	.	+	.	Parent=Os03t0210450-00
Chr03	irgsp1_rep	mRNA	5771944	5772406	.	+	.	ID=Os03t0210500-01;Name=Os03t0210500-01;Locus_id=Os03g0210500;Note=Protein of unknown function DUF538 family protein.;Transcript_evidence=AK058684 (DDBJ%2C Best hit);ORF_evidence=NP_001148446.1 (RefSeq);InterPro=Protein of unknown function DUF538 (IPR007493);NIAS_FLcDNA=001-019-A07;Expression=AK058684;TENOR=Os03t0210500-01;KEGG=Os03t0210500-01
Chr03	irgsp1_rep	five_prime_UTR	5771944	5771945	.	+	.	Parent=Os03t0210500-01
Chr03	irgsp1_rep	CDS	5771946	5772251	.	+	0	Parent=Os03t0210500-01
Chr03	irgsp1_rep	three_prime_UTR	5772252	5772406	.	+	.	Parent=Os03t0210500-01
Chr03	irgsp1_rep	mRNA	5774735	5775940	.	-	.	ID=Os03t0210600-01;Name=Os03t0210600-01;Locus_id=Os03g0210600;Note=Conserved hypothetical protein.;Transcript_evidence=AK070125 (DDBJ%2C Best hit);ORF_evidence=Q10Q42 (UniProt);NIAS_FLcDNA=J023043P22;TENOR=Os03t0210600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	5775939	5775940	.	-	.	Parent=Os03t0210600-01
Chr03	irgsp1_rep	CDS	5775036	5775938	.	-	0	Parent=Os03t0210600-01
Chr03	irgsp1_rep	three_prime_UTR	5774735	5775035	.	-	.	Parent=Os03t0210600-01
Chr03	irgsp1_rep	mRNA	5777776	5779292	.	+	.	ID=Os03t0210700-01;Name=Os03t0210700-01;Locus_id=Os03g0210700;Note=Conserved hypothetical protein.;Transcript_evidence=AK099456 (DDBJ%2C Best hit);ORF_evidence=Q10Q41 (UniProt);NIAS_FLcDNA=J013022M22;TENOR=Os03t0210700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	5777776	5777895	.	+	.	Parent=Os03t0210700-01
Chr03	irgsp1_rep	CDS	5777896	5778082	.	+	0	Parent=Os03t0210700-01
Chr03	irgsp1_rep	CDS	5778499	5778593	.	+	2	Parent=Os03t0210700-01
Chr03	irgsp1_rep	three_prime_UTR	5778594	5779292	.	+	.	Parent=Os03t0210700-01
Chr03	irgsp1_rep	mRNA	5779625	5784938	.	-	.	ID=Os03t0210800-01;Name=Os03t0210800-01;Locus_id=Os03g0210800;CGSNL Gene Symbol=NTP5;CGSNL Gene Name=NUCLEOTIDYL TRANSFERASE PROTEIN 5;Oryzabase Gene Symbol Synonym(s)=OsNTP5;Oryzabase Gene Name Synonym(s)=nucleotidyl transferase protein 5;Note=Similar to Nucleotidyltransferase domain containing protein%2C expressed.;Transcript_evidence=AK242640 (DDBJ%2C Best hit);ORF_evidence=Q10Q39 (UniProt);NIAS_FLcDNA=J090024C01;Oryzabase=21888;TENOR=Os03t0210800-01;KEGG=Os03t0210800-01
Chr03	irgsp1_rep	five_prime_UTR	5784937	5784938	.	-	.	Parent=Os03t0210800-01
Chr03	irgsp1_rep	CDS	5783134	5784936	.	-	0	Parent=Os03t0210800-01
Chr03	irgsp1_rep	CDS	5781693	5782279	.	-	0	Parent=Os03t0210800-01
Chr03	irgsp1_rep	CDS	5780220	5780223	.	-	1	Parent=Os03t0210800-01
Chr03	irgsp1_rep	three_prime_UTR	5779625	5780219	.	-	.	Parent=Os03t0210800-01
Chr03	irgsp1_rep	mRNA	5796303	5796813	.	-	.	ID=Os03t0210883-00;Name=Os03t0210883-00;Locus_id=Os03g0210883;Note=Hypothetical gene.;Transcript_evidence=EU948607 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0210883-00;KEGG=Os03t0210883-00
Chr03	irgsp1_rep	five_prime_UTR	5796740	5796813	.	-	.	Parent=Os03t0210883-00
Chr03	irgsp1_rep	CDS	5796347	5796739	.	-	0	Parent=Os03t0210883-00
Chr03	irgsp1_rep	three_prime_UTR	5796303	5796346	.	-	.	Parent=Os03t0210883-00
Chr03	irgsp1_rep	mRNA	5796329	5797044	.	+	.	ID=Os03t0210900-01;Name=Os03t0210900-01;Locus_id=Os03g0210900;Note=Similar to predicted protein.;Transcript_evidence=AK063086 (DDBJ%2C Best hit);ORF_evidence=E4MVI4 (UniProt);NIAS_FLcDNA=001-111-A08;Expression=AK063086;TENOR=Os03t0210900-01;KEGG=Os03t0210900-01
Chr03	irgsp1_rep	five_prime_UTR	5796329	5796330	.	+	.	Parent=Os03t0210900-01
Chr03	irgsp1_rep	CDS	5796331	5796374	.	+	0	Parent=Os03t0210900-01
Chr03	irgsp1_rep	CDS	5796529	5796600	.	+	1	Parent=Os03t0210900-01
Chr03	irgsp1_rep	CDS	5796707	5796848	.	+	1	Parent=Os03t0210900-01
Chr03	irgsp1_rep	three_prime_UTR	5796849	5797044	.	+	.	Parent=Os03t0210900-01
Chr03	irgsp1_rep	mRNA	5798558	5801146	.	+	.	ID=Os03t0211100-01;Name=Os03t0211100-01;Locus_id=Os03g0211100;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK111910 (DDBJ%2C Best hit),AK111964 (DDBJ%2C Best hit);ORF_evidence=NP_974376.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907);NIAS_FLcDNA=J033090H12,006-201-H12;TENOR=Os03t0211100-01
Chr03	irgsp1_rep	five_prime_UTR	5798558	5798730	.	+	.	Parent=Os03t0211100-01
Chr03	irgsp1_rep	five_prime_UTR	5800123	5800169	.	+	.	Parent=Os03t0211100-01
Chr03	irgsp1_rep	CDS	5800170	5800952	.	+	0	Parent=Os03t0211100-01
Chr03	irgsp1_rep	three_prime_UTR	5800953	5801146	.	+	.	Parent=Os03t0211100-01
Chr03	irgsp1_rep	mRNA	5807868	5812643	.	+	.	ID=Os03t0211400-01;Name=Os03t0211400-01;Locus_id=Os03g0211400;Note=Calmodulin-binding%2C plant family protein.;Transcript_evidence=AK070892 (DDBJ%2C Best hit);ORF_evidence=A2XDV0 (UniProt);InterPro=Calmodulin-binding protein%2C plant (IPR012417);NIAS_FLcDNA=J023073N11;Expression=AK070892;TENOR=Os03t0211400-01;KEGG=Os03t0211400-01
Chr03	irgsp1_rep	five_prime_UTR	5807868	5808024	.	+	.	Parent=Os03t0211400-01
Chr03	irgsp1_rep	five_prime_UTR	5810011	5810069	.	+	.	Parent=Os03t0211400-01
Chr03	irgsp1_rep	CDS	5810070	5812385	.	+	0	Parent=Os03t0211400-01
Chr03	irgsp1_rep	three_prime_UTR	5812386	5812643	.	+	.	Parent=Os03t0211400-01
Chr03	irgsp1_rep	mRNA	5814166	5816687	.	-	.	ID=Os03t0211500-01;Name=Os03t0211500-01;Locus_id=Os03g0211500;Note=Hypothetical conserved gene.;Transcript_evidence=AK240719 (DDBJ%2C Best hit);ORF_evidence=Q10Q33 (UniProt);InterPro=Remorin%2C C-terminal (IPR005516);NIAS_FLcDNA=J043024L24;TENOR=Os03t0211500-01;KEGG=Os03t0211500-01
Chr03	irgsp1_rep	five_prime_UTR	5816499	5816687	.	-	.	Parent=Os03t0211500-01
Chr03	irgsp1_rep	CDS	5816473	5816498	.	-	0	Parent=Os03t0211500-01
Chr03	irgsp1_rep	CDS	5816001	5816089	.	-	1	Parent=Os03t0211500-01
Chr03	irgsp1_rep	CDS	5815376	5815630	.	-	2	Parent=Os03t0211500-01
Chr03	irgsp1_rep	CDS	5814958	5815285	.	-	2	Parent=Os03t0211500-01
Chr03	irgsp1_rep	CDS	5814835	5814883	.	-	1	Parent=Os03t0211500-01
Chr03	irgsp1_rep	CDS	5814438	5814629	.	-	0	Parent=Os03t0211500-01
Chr03	irgsp1_rep	three_prime_UTR	5814166	5814437	.	-	.	Parent=Os03t0211500-01
Chr03	irgsp1_rep	mRNA	5817877	5819374	.	+	.	ID=Os03t0211600-01;Name=Os03t0211600-01;Locus_id=Os03g0211600;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK059620 (DDBJ%2C Best hit);ORF_evidence=Q10Q32 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=001-030-G12;TENOR=Os03t0211600-01
Chr03	irgsp1_rep	five_prime_UTR	5817877	5818088	.	+	.	Parent=Os03t0211600-01
Chr03	irgsp1_rep	CDS	5818089	5819374	.	+	0	Parent=Os03t0211600-01
Chr03	irgsp1_rep	mRNA	5823655	5828110	.	+	.	ID=Os03t0211700-01;Name=Os03t0211700-01;Locus_id=Os03g0211700;Note=Glycoside hydrolase family 79%2C N-terminal protein.;Transcript_evidence=AK072765 (DDBJ%2C Best hit);ORF_evidence=C9E7B7 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: hydrolase activity%2C acting on glycosyl bonds (GO:0016798);InterPro=Glycoside hydrolase%2C family 79 (IPR005199),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J023139K11;Expression=AK072765;TENOR=Os03t0211700-01;KEGG=Os03t0211700-01
Chr03	irgsp1_rep	five_prime_UTR	5823655	5824087	.	+	.	Parent=Os03t0211700-01
Chr03	irgsp1_rep	five_prime_UTR	5824422	5824430	.	+	.	Parent=Os03t0211700-01
Chr03	irgsp1_rep	CDS	5824431	5824649	.	+	0	Parent=Os03t0211700-01
Chr03	irgsp1_rep	CDS	5824758	5824794	.	+	0	Parent=Os03t0211700-01
Chr03	irgsp1_rep	CDS	5825309	5825489	.	+	2	Parent=Os03t0211700-01
Chr03	irgsp1_rep	CDS	5825662	5825810	.	+	1	Parent=Os03t0211700-01
Chr03	irgsp1_rep	CDS	5825939	5826172	.	+	2	Parent=Os03t0211700-01
Chr03	irgsp1_rep	CDS	5826588	5826777	.	+	2	Parent=Os03t0211700-01
Chr03	irgsp1_rep	CDS	5826904	5827029	.	+	1	Parent=Os03t0211700-01
Chr03	irgsp1_rep	CDS	5827109	5827208	.	+	1	Parent=Os03t0211700-01
Chr03	irgsp1_rep	CDS	5827406	5827795	.	+	0	Parent=Os03t0211700-01
Chr03	irgsp1_rep	three_prime_UTR	5827796	5828110	.	+	.	Parent=Os03t0211700-01
Chr03	irgsp1_rep	mRNA	5823729	5826942	.	+	.	ID=Os03t0211700-02;Name=Os03t0211700-02;Locus_id=Os03g0211700;Note=Similar to Heparanase-like protein 2.;Transcript_evidence=AK105099 (DDBJ%2C Best hit);ORF_evidence=C9E7B7 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: hydrolase activity%2C acting on glycosyl bonds (GO:0016798);InterPro=Glycoside hydrolase%2C family 79 (IPR005199),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-100-C07;TENOR=Os03t0211700-02
Chr03	irgsp1_rep	five_prime_UTR	5823729	5824087	.	+	.	Parent=Os03t0211700-02
Chr03	irgsp1_rep	five_prime_UTR	5824422	5824430	.	+	.	Parent=Os03t0211700-02
Chr03	irgsp1_rep	CDS	5824431	5824649	.	+	0	Parent=Os03t0211700-02
Chr03	irgsp1_rep	CDS	5824758	5824794	.	+	0	Parent=Os03t0211700-02
Chr03	irgsp1_rep	CDS	5825309	5825489	.	+	2	Parent=Os03t0211700-02
Chr03	irgsp1_rep	CDS	5825662	5825810	.	+	1	Parent=Os03t0211700-02
Chr03	irgsp1_rep	CDS	5825939	5826172	.	+	2	Parent=Os03t0211700-02
Chr03	irgsp1_rep	CDS	5826588	5826777	.	+	2	Parent=Os03t0211700-02
Chr03	irgsp1_rep	CDS	5826904	5826942	.	+	1	Parent=Os03t0211700-02
Chr03	irgsp1_rep	mRNA	5829016	5835122	.	-	.	ID=Os03t0211800-01;Name=Os03t0211800-01;Locus_id=Os03g0211800;RAP-DB Gene Symbol Synonym(s)=OsGAUT21;RAP-DB Gene Name Synonym(s)=galacturonosyltransferase 21;CGSNL Gene Symbol=GAUT21;CGSNL Gene Name=GALACTURONOSYLTRANSFERASE 21;Oryzabase Gene Symbol Synonym(s)=OsGAUT21;Oryzabase Gene Name Synonym(s)=galacturonosyltransferase 21;Note=Galacturonosyltransferase%2C glycosyltransferase family 8 (GT8) protein%2C Salt and cold stress response;Transcript_evidence=AK243252;ORF_evidence=Q10Q30;GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Nucleotide-diphospho-sugar transferases (IPR029044),Glycosyl transferase%2C family 8 (IPR002495);NIAS_FLcDNA=J100048D21;Manual Curation=March 12%2C 2020;Literature_PMID=31096659;Oryzabase=23263;TENOR=Os03t0211800-01;KEGG=Os03t0211800-01
Chr03	irgsp1_rep	five_prime_UTR	5834769	5835122	.	-	.	Parent=Os03t0211800-01
Chr03	irgsp1_rep	CDS	5834441	5834768	.	-	0	Parent=Os03t0211800-01
Chr03	irgsp1_rep	CDS	5833367	5833425	.	-	2	Parent=Os03t0211800-01
Chr03	irgsp1_rep	CDS	5833100	5833255	.	-	0	Parent=Os03t0211800-01
Chr03	irgsp1_rep	CDS	5831766	5832353	.	-	0	Parent=Os03t0211800-01
Chr03	irgsp1_rep	CDS	5830921	5831223	.	-	0	Parent=Os03t0211800-01
Chr03	irgsp1_rep	CDS	5829628	5829927	.	-	0	Parent=Os03t0211800-01
Chr03	irgsp1_rep	three_prime_UTR	5829016	5829627	.	-	.	Parent=Os03t0211800-01
Chr03	irgsp1_rep	mRNA	5836350	5836787	.	+	.	ID=Os03t0211850-00;Name=Os03t0211850-00;Locus_id=Os03g0211850;Note=Hypothetical gene.;Transcript_evidence=CT835248 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os03t0211850-00;KEGG=Os03t0211850-00
Chr03	irgsp1_rep	five_prime_UTR	5836350	5836376	.	+	.	Parent=Os03t0211850-00
Chr03	irgsp1_rep	CDS	5836377	5836634	.	+	0	Parent=Os03t0211850-00
Chr03	irgsp1_rep	three_prime_UTR	5836635	5836787	.	+	.	Parent=Os03t0211850-00
Chr03	irgsp1_rep	mRNA	5840929	5844831	.	-	.	ID=Os03t0211900-01;Name=Os03t0211900-01;Locus_id=Os03g0211900;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=AK059280 (DDBJ%2C Best hit);ORF_evidence=B4FI01 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=001-025-C11;Expression=AK059280;TENOR=Os03t0211900-01;KEGG=Os03t0211900-01
Chr03	irgsp1_rep	five_prime_UTR	5844738	5844831	.	-	.	Parent=Os03t0211900-01
Chr03	irgsp1_rep	CDS	5844626	5844737	.	-	0	Parent=Os03t0211900-01
Chr03	irgsp1_rep	CDS	5843968	5844115	.	-	2	Parent=Os03t0211900-01
Chr03	irgsp1_rep	CDS	5843190	5843261	.	-	1	Parent=Os03t0211900-01
Chr03	irgsp1_rep	CDS	5842533	5842604	.	-	1	Parent=Os03t0211900-01
Chr03	irgsp1_rep	CDS	5842214	5842285	.	-	1	Parent=Os03t0211900-01
Chr03	irgsp1_rep	CDS	5841981	5842124	.	-	1	Parent=Os03t0211900-01
Chr03	irgsp1_rep	CDS	5841805	5841885	.	-	1	Parent=Os03t0211900-01
Chr03	irgsp1_rep	CDS	5841639	5841710	.	-	1	Parent=Os03t0211900-01
Chr03	irgsp1_rep	CDS	5841482	5841553	.	-	1	Parent=Os03t0211900-01
Chr03	irgsp1_rep	CDS	5841310	5841381	.	-	1	Parent=Os03t0211900-01
Chr03	irgsp1_rep	CDS	5841112	5841202	.	-	1	Parent=Os03t0211900-01
Chr03	irgsp1_rep	three_prime_UTR	5840929	5841111	.	-	.	Parent=Os03t0211900-01
Chr03	irgsp1_rep	mRNA	5840714	5844806	.	-	.	ID=Os03t0211900-02;Name=Os03t0211900-02;Locus_id=Os03g0211900;Note=Hypothetical conserved gene.;Transcript_evidence=AK121380 (DDBJ%2C Best hit);ORF_evidence=B8AQV8 (UniProt);InterPro=Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J023127G18;Expression=AK121380;TENOR=Os03t0211900-02;KEGG=Os03t0211900-02
Chr03	irgsp1_rep	five_prime_UTR	5844738	5844806	.	-	.	Parent=Os03t0211900-02
Chr03	irgsp1_rep	CDS	5844626	5844737	.	-	0	Parent=Os03t0211900-02
Chr03	irgsp1_rep	CDS	5843968	5844115	.	-	2	Parent=Os03t0211900-02
Chr03	irgsp1_rep	CDS	5843186	5843261	.	-	1	Parent=Os03t0211900-02
Chr03	irgsp1_rep	three_prime_UTR	5842533	5843185	.	-	.	Parent=Os03t0211900-02
Chr03	irgsp1_rep	three_prime_UTR	5842214	5842285	.	-	.	Parent=Os03t0211900-02
Chr03	irgsp1_rep	three_prime_UTR	5841981	5842124	.	-	.	Parent=Os03t0211900-02
Chr03	irgsp1_rep	three_prime_UTR	5841805	5841885	.	-	.	Parent=Os03t0211900-02
Chr03	irgsp1_rep	three_prime_UTR	5841639	5841710	.	-	.	Parent=Os03t0211900-02
Chr03	irgsp1_rep	three_prime_UTR	5841482	5841553	.	-	.	Parent=Os03t0211900-02
Chr03	irgsp1_rep	three_prime_UTR	5840714	5841381	.	-	.	Parent=Os03t0211900-02
Chr03	irgsp1_rep	mRNA	5848833	5850383	.	+	.	ID=Os03t0212000-00;Name=Os03t0212000-00;Locus_id=Os03g0212000;Note=Hypothetical conserved gene.;Transcript_evidence=tplb0013k21 (Wheat FLcDNA);ORF_evidence=Q00RR9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os03t0212000-00;KEGG=Os03t0212000-00
Chr03	irgsp1_rep	five_prime_UTR	5848833	5848898	.	+	.	Parent=Os03t0212000-00
Chr03	irgsp1_rep	CDS	5848899	5850383	.	+	0	Parent=Os03t0212000-00
Chr03	irgsp1_rep	mRNA	5853962	5857465	.	+	.	ID=Os03t0212200-01;Name=Os03t0212200-01;Locus_id=Os03g0212200;Oryzabase Gene Symbol Synonym(s)=OsIRL7;Oryzabase Gene Name Synonym(s)=intracellular Ras-group-related LRR protein 7;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=AK069951 (DDBJ%2C Best hit);ORF_evidence=B9F655 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591);NIAS_FLcDNA=J023036E24;Oryzabase=14437;TENOR=Os03t0212200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	5853962	5854003	.	+	.	Parent=Os03t0212200-01
Chr03	irgsp1_rep	CDS	5854004	5854102	.	+	0	Parent=Os03t0212200-01
Chr03	irgsp1_rep	CDS	5854945	5855014	.	+	0	Parent=Os03t0212200-01
Chr03	irgsp1_rep	CDS	5855399	5855445	.	+	2	Parent=Os03t0212200-01
Chr03	irgsp1_rep	CDS	5855573	5855681	.	+	0	Parent=Os03t0212200-01
Chr03	irgsp1_rep	CDS	5855861	5855946	.	+	2	Parent=Os03t0212200-01
Chr03	irgsp1_rep	CDS	5856108	5856125	.	+	0	Parent=Os03t0212200-01
Chr03	irgsp1_rep	three_prime_UTR	5856126	5856189	.	+	.	Parent=Os03t0212200-01
Chr03	irgsp1_rep	three_prime_UTR	5856274	5856364	.	+	.	Parent=Os03t0212200-01
Chr03	irgsp1_rep	three_prime_UTR	5856710	5856795	.	+	.	Parent=Os03t0212200-01
Chr03	irgsp1_rep	three_prime_UTR	5856983	5857069	.	+	.	Parent=Os03t0212200-01
Chr03	irgsp1_rep	three_prime_UTR	5857155	5857465	.	+	.	Parent=Os03t0212200-01
Chr03	irgsp1_rep	mRNA	5858227	5859977	.	+	.	ID=Os03t0212300-01;Name=Os03t0212300-01;Locus_id=Os03g0212300;Note=Transcriptional factor B3 family protein.;Transcript_evidence=AK070861 (DDBJ%2C Best hit);ORF_evidence=Q10Q26 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=J023073O05;Expression=AK070861;TENOR=Os03t0212300-01;KEGG=Os03t0212300-01
Chr03	irgsp1_rep	five_prime_UTR	5858227	5858352	.	+	.	Parent=Os03t0212300-01
Chr03	irgsp1_rep	five_prime_UTR	5858467	5858519	.	+	.	Parent=Os03t0212300-01
Chr03	irgsp1_rep	CDS	5858520	5858603	.	+	0	Parent=Os03t0212300-01
Chr03	irgsp1_rep	CDS	5858681	5858965	.	+	0	Parent=Os03t0212300-01
Chr03	irgsp1_rep	CDS	5859046	5859195	.	+	0	Parent=Os03t0212300-01
Chr03	irgsp1_rep	CDS	5859303	5859596	.	+	0	Parent=Os03t0212300-01
Chr03	irgsp1_rep	three_prime_UTR	5859597	5859977	.	+	.	Parent=Os03t0212300-01
Chr03	irgsp1_rep	mRNA	5860717	5863891	.	+	.	ID=Os03t0212400-01;Name=Os03t0212400-01;Locus_id=Os03g0212400;Note=Similar to SNAP25 homologous protein SNAP29.;Transcript_evidence=AK064327 (DDBJ%2C Best hit),AK102778 (DDBJ%2C Best hit);ORF_evidence=B6SUS9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Target SNARE coiled-coil domain (IPR000727);NIAS_FLcDNA=002-107-F07,J033107I23;TENOR=Os03t0212400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	5860717	5860918	.	+	.	Parent=Os03t0212400-01
Chr03	irgsp1_rep	five_prime_UTR	5862051	5862098	.	+	.	Parent=Os03t0212400-01
Chr03	irgsp1_rep	CDS	5862099	5862419	.	+	0	Parent=Os03t0212400-01
Chr03	irgsp1_rep	CDS	5862878	5862968	.	+	0	Parent=Os03t0212400-01
Chr03	irgsp1_rep	CDS	5863047	5863171	.	+	2	Parent=Os03t0212400-01
Chr03	irgsp1_rep	CDS	5863248	5863345	.	+	0	Parent=Os03t0212400-01
Chr03	irgsp1_rep	CDS	5863454	5863553	.	+	1	Parent=Os03t0212400-01
Chr03	irgsp1_rep	three_prime_UTR	5863554	5863891	.	+	.	Parent=Os03t0212400-01
Chr03	irgsp1_rep	mRNA	5865638	5869191	.	+	.	ID=Os03t0212600-01;Name=Os03t0212600-01;Locus_id=Os03g0212600;Note=Targeting for Xklp2 family protein.;Transcript_evidence=AK064500 (DDBJ%2C Best hit);ORF_evidence=Q10Q22 (UniProt);InterPro=Xklp2 targeting protein (IPR009675);NIAS_FLcDNA=002-111-D04;Expression=AK064500;TENOR=Os03t0212600-01;KEGG=Os03t0212600-01
Chr03	irgsp1_rep	five_prime_UTR	5865638	5865824	.	+	.	Parent=Os03t0212600-01
Chr03	irgsp1_rep	CDS	5865825	5866096	.	+	0	Parent=Os03t0212600-01
Chr03	irgsp1_rep	CDS	5866186	5866237	.	+	1	Parent=Os03t0212600-01
Chr03	irgsp1_rep	CDS	5866333	5866410	.	+	0	Parent=Os03t0212600-01
Chr03	irgsp1_rep	CDS	5867734	5867853	.	+	0	Parent=Os03t0212600-01
Chr03	irgsp1_rep	CDS	5868124	5868222	.	+	0	Parent=Os03t0212600-01
Chr03	irgsp1_rep	CDS	5868327	5868481	.	+	0	Parent=Os03t0212600-01
Chr03	irgsp1_rep	CDS	5868698	5868763	.	+	1	Parent=Os03t0212600-01
Chr03	irgsp1_rep	CDS	5868901	5869009	.	+	1	Parent=Os03t0212600-01
Chr03	irgsp1_rep	three_prime_UTR	5869010	5869191	.	+	.	Parent=Os03t0212600-01
Chr03	irgsp1_rep	mRNA	5870156	5874811	.	+	.	ID=Os03t0212700-01;Name=Os03t0212700-01;Locus_id=Os03g0212700;Note=Similar to CytoChrome C reductase-processing peptidase subunit I%2C MPP subunit I%2C P55.;Transcript_evidence=AK120113 (DDBJ%2C Best hit);ORF_evidence=B6TG70 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: catalytic activity (GO:0003824),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: metal ion binding (GO:0046872);InterPro=Peptidase M16%2C zinc-binding site (IPR001431),Peptidase M16%2C C-terminal (IPR007863),Peptidase M16%2C core (IPR011237),Metalloenzyme%2C LuxS/M16 peptidase-like%2C metal-binding (IPR011249),Peptidase M16%2C N-terminal (IPR011765);NIAS_FLcDNA=J013025E12;Expression=AK120113;TENOR=Os03t0212700-01;KEGG=Os03t0212700-01 (EC:3.4.24.64)
Chr03	irgsp1_rep	five_prime_UTR	5870156	5870318	.	+	.	Parent=Os03t0212700-01
Chr03	irgsp1_rep	CDS	5870319	5870996	.	+	0	Parent=Os03t0212700-01
Chr03	irgsp1_rep	CDS	5871506	5871670	.	+	0	Parent=Os03t0212700-01
Chr03	irgsp1_rep	CDS	5871795	5871932	.	+	0	Parent=Os03t0212700-01
Chr03	irgsp1_rep	CDS	5872002	5872153	.	+	0	Parent=Os03t0212700-01
Chr03	irgsp1_rep	CDS	5872260	5872368	.	+	1	Parent=Os03t0212700-01
Chr03	irgsp1_rep	CDS	5873057	5873155	.	+	0	Parent=Os03t0212700-01
Chr03	irgsp1_rep	CDS	5873245	5873310	.	+	0	Parent=Os03t0212700-01
Chr03	irgsp1_rep	CDS	5873397	5873504	.	+	0	Parent=Os03t0212700-01
Chr03	irgsp1_rep	CDS	5874326	5874412	.	+	0	Parent=Os03t0212700-01
Chr03	irgsp1_rep	three_prime_UTR	5874413	5874811	.	+	.	Parent=Os03t0212700-01
Chr03	irgsp1_rep	mRNA	5870912	5874813	.	+	.	ID=Os03t0212700-02;Name=Os03t0212700-02;Locus_id=Os03g0212700;Note=Similar to mitochondrial-processing peptidase beta subunit.;Transcript_evidence=AK060718 (DDBJ%2C Best hit);ORF_evidence=B6TG70 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: catalytic activity (GO:0003824),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: metal ion binding (GO:0046872);InterPro=Peptidase M16%2C C-terminal (IPR007863),Peptidase M16%2C core (IPR011237),Metalloenzyme%2C LuxS/M16 peptidase-like%2C metal-binding (IPR011249),Peptidase M16%2C N-terminal (IPR011765);NIAS_FLcDNA=001-031-E10;Expression=AK060718;TENOR=Os03t0212700-02;KEGG=Os03t0212700-02 (EC:3.4.24.64)
Chr03	irgsp1_rep	five_prime_UTR	5870912	5870912	.	+	.	Parent=Os03t0212700-02
Chr03	irgsp1_rep	CDS	5870913	5870996	.	+	0	Parent=Os03t0212700-02
Chr03	irgsp1_rep	CDS	5871506	5871670	.	+	0	Parent=Os03t0212700-02
Chr03	irgsp1_rep	CDS	5871795	5871932	.	+	0	Parent=Os03t0212700-02
Chr03	irgsp1_rep	CDS	5872002	5872153	.	+	0	Parent=Os03t0212700-02
Chr03	irgsp1_rep	CDS	5872260	5872368	.	+	1	Parent=Os03t0212700-02
Chr03	irgsp1_rep	CDS	5873057	5873155	.	+	0	Parent=Os03t0212700-02
Chr03	irgsp1_rep	CDS	5873245	5873310	.	+	0	Parent=Os03t0212700-02
Chr03	irgsp1_rep	CDS	5873397	5873504	.	+	0	Parent=Os03t0212700-02
Chr03	irgsp1_rep	CDS	5874326	5874412	.	+	0	Parent=Os03t0212700-02
Chr03	irgsp1_rep	three_prime_UTR	5874413	5874813	.	+	.	Parent=Os03t0212700-02
Chr03	irgsp1_rep	mRNA	5876410	5883222	.	-	.	ID=Os03t0212800-01;Name=Os03t0212800-01;Locus_id=Os03g0212800;RAP-DB Gene Symbol Synonym(s)=Os3BGlu6;RAP-DB Gene Name Synonym(s)=beta-glucosidase 6%2C &beta%3B-glucosidase 6;CGSNL Gene Symbol=BGLU6;CGSNL Gene Name=BETA-GLUCOSIDASE 6;Oryzabase Gene Symbol Synonym(s)=Os3bglu6%2C Os3BGlu6%2C 3BGlu6;Oryzabase Gene Name Synonym(s)=beta-glucosidase 6;Note=Beta-glucosidase%2C ABA recycling%2C Drought tolerance%2C Control of photosynthesis;Transcript_evidence=AK119546;ORF_evidence=Q8L7J2;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase superfamily (IPR017853),Glycoside hydrolase family 1 (IPR001360),Glycosyl hydrolases family 1%2C N-terminal conserved site (IPR033132);NIAS_FLcDNA=001-207-A05;Manual Curation=January 17%2C 2020;Literature_PMID=31917861;Oryzabase=12080;Expression=AK119546;TENOR=Os03t0212800-01;KEGG=Os03t0212800-01 (EC:3.2.1.21);Subcellular location=chloroplast (GO:0009507)
Chr03	irgsp1_rep	five_prime_UTR	5883164	5883222	.	-	.	Parent=Os03t0212800-01
Chr03	irgsp1_rep	CDS	5882972	5883163	.	-	0	Parent=Os03t0212800-01
Chr03	irgsp1_rep	CDS	5880708	5880774	.	-	0	Parent=Os03t0212800-01
Chr03	irgsp1_rep	CDS	5879808	5879866	.	-	2	Parent=Os03t0212800-01
Chr03	irgsp1_rep	CDS	5879602	5879677	.	-	0	Parent=Os03t0212800-01
Chr03	irgsp1_rep	CDS	5879397	5879468	.	-	2	Parent=Os03t0212800-01
Chr03	irgsp1_rep	CDS	5879226	5879313	.	-	2	Parent=Os03t0212800-01
Chr03	irgsp1_rep	CDS	5878503	5878758	.	-	1	Parent=Os03t0212800-01
Chr03	irgsp1_rep	CDS	5878280	5878395	.	-	0	Parent=Os03t0212800-01
Chr03	irgsp1_rep	CDS	5877717	5877940	.	-	1	Parent=Os03t0212800-01
Chr03	irgsp1_rep	CDS	5877340	5877371	.	-	2	Parent=Os03t0212800-01
Chr03	irgsp1_rep	CDS	5877136	5877238	.	-	0	Parent=Os03t0212800-01
Chr03	irgsp1_rep	CDS	5876919	5877027	.	-	2	Parent=Os03t0212800-01
Chr03	irgsp1_rep	CDS	5876613	5876784	.	-	1	Parent=Os03t0212800-01
Chr03	irgsp1_rep	three_prime_UTR	5876410	5876612	.	-	.	Parent=Os03t0212800-01
Chr03	irgsp1_rep	mRNA	5876647	5879307	.	+	.	ID=Os03t0212950-00;Name=Os03t0212950-00;Locus_id=Os03g0212950;Note=Hypothetical protein.;Transcript_evidence=tplb0037o13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0212950-00
Chr03	irgsp1_rep	five_prime_UTR	5876647	5876777	.	+	.	Parent=Os03t0212950-00
Chr03	irgsp1_rep	five_prime_UTR	5876913	5876993	.	+	.	Parent=Os03t0212950-00
Chr03	irgsp1_rep	CDS	5876994	5877016	.	+	0	Parent=Os03t0212950-00
Chr03	irgsp1_rep	CDS	5877121	5877274	.	+	1	Parent=Os03t0212950-00
Chr03	irgsp1_rep	CDS	5877721	5877912	.	+	0	Parent=Os03t0212950-00
Chr03	irgsp1_rep	CDS	5878256	5878291	.	+	0	Parent=Os03t0212950-00
Chr03	irgsp1_rep	three_prime_UTR	5878292	5878390	.	+	.	Parent=Os03t0212950-00
Chr03	irgsp1_rep	three_prime_UTR	5878495	5878774	.	+	.	Parent=Os03t0212950-00
Chr03	irgsp1_rep	three_prime_UTR	5879243	5879307	.	+	.	Parent=Os03t0212950-00
Chr03	irgsp1_rep	mRNA	5896038	5899522	.	+	.	ID=Os03t0213100-01;Name=Os03t0213100-01;Locus_id=Os03g0213100;Oryzabase Gene Name Synonym(s)=SEC61 alpha subunit;Note=Similar to Sec61p.;Transcript_evidence=AK073633 (DDBJ%2C Best hit);ORF_evidence=Q9LLR4 (UniProt);GO=Biological Process: protein transport (GO:0015031),Cellular Component: membrane (GO:0016020),Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450);InterPro=SecY protein (IPR002208),Translocon Sec61/SecY%2C plug domain (IPR019561),SecY subunit domain (IPR023201);NIAS_FLcDNA=J033048G12;Oryzabase=16018;Expression=AK073633;TENOR=Os03t0213100-01;KEGG=Os03t0213100-01
Chr03	irgsp1_rep	five_prime_UTR	5896038	5896177	.	+	.	Parent=Os03t0213100-01
Chr03	irgsp1_rep	five_prime_UTR	5897112	5897117	.	+	.	Parent=Os03t0213100-01
Chr03	irgsp1_rep	CDS	5897118	5897461	.	+	0	Parent=Os03t0213100-01
Chr03	irgsp1_rep	CDS	5897660	5897887	.	+	1	Parent=Os03t0213100-01
Chr03	irgsp1_rep	CDS	5897966	5898320	.	+	1	Parent=Os03t0213100-01
Chr03	irgsp1_rep	CDS	5898405	5898529	.	+	0	Parent=Os03t0213100-01
Chr03	irgsp1_rep	CDS	5898656	5898791	.	+	1	Parent=Os03t0213100-01
Chr03	irgsp1_rep	CDS	5898888	5899127	.	+	0	Parent=Os03t0213100-01
Chr03	irgsp1_rep	three_prime_UTR	5899128	5899522	.	+	.	Parent=Os03t0213100-01
Chr03	irgsp1_rep	mRNA	5897211	5899413	.	+	.	ID=Os03t0213100-02;Name=Os03t0213100-02;Locus_id=Os03g0213100;Oryzabase Gene Name Synonym(s)=SEC61 alpha subunit;Note=Similar to Sec61p.;Transcript_evidence=AK062070 (DDBJ%2C Best hit);ORF_evidence=Q9LLR4 (UniProt);GO=Biological Process: protein transport (GO:0015031),Cellular Component: membrane (GO:0016020),Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450);InterPro=SecY protein (IPR002208),Translocon Sec61/SecY%2C plug domain (IPR019561),SecY subunit domain (IPR023201);NIAS_FLcDNA=001-044-E03;Oryzabase=16018;Expression=AK062070;TENOR=Os03t0213100-02;KEGG=Os03t0213100-02
Chr03	irgsp1_rep	CDS	5897211	5897461	.	+	0	Parent=Os03t0213100-02
Chr03	irgsp1_rep	CDS	5897660	5897887	.	+	1	Parent=Os03t0213100-02
Chr03	irgsp1_rep	CDS	5897966	5898320	.	+	1	Parent=Os03t0213100-02
Chr03	irgsp1_rep	CDS	5898405	5898529	.	+	0	Parent=Os03t0213100-02
Chr03	irgsp1_rep	CDS	5898656	5898791	.	+	1	Parent=Os03t0213100-02
Chr03	irgsp1_rep	CDS	5898888	5899127	.	+	0	Parent=Os03t0213100-02
Chr03	irgsp1_rep	three_prime_UTR	5899128	5899413	.	+	.	Parent=Os03t0213100-02
Chr03	irgsp1_rep	mRNA	5896045	5899167	.	-	.	ID=Os03t0213150-00;Name=Os03t0213150-00;Locus_id=Os03g0213150;Note=Hypothetical protein.;Transcript_evidence=tplb0043d18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0213150-00
Chr03	irgsp1_rep	five_prime_UTR	5898872	5899167	.	-	.	Parent=Os03t0213150-00
Chr03	irgsp1_rep	five_prime_UTR	5898642	5898777	.	-	.	Parent=Os03t0213150-00
Chr03	irgsp1_rep	five_prime_UTR	5898414	5898516	.	-	.	Parent=Os03t0213150-00
Chr03	irgsp1_rep	five_prime_UTR	5898044	5898327	.	-	.	Parent=Os03t0213150-00
Chr03	irgsp1_rep	CDS	5897944	5898043	.	-	0	Parent=Os03t0213150-00
Chr03	irgsp1_rep	CDS	5897676	5897866	.	-	2	Parent=Os03t0213150-00
Chr03	irgsp1_rep	three_prime_UTR	5897656	5897675	.	-	.	Parent=Os03t0213150-00
Chr03	irgsp1_rep	three_prime_UTR	5897110	5897459	.	-	.	Parent=Os03t0213150-00
Chr03	irgsp1_rep	three_prime_UTR	5896045	5896170	.	-	.	Parent=Os03t0213150-00
Chr03	irgsp1_rep	mRNA	5900087	5902461	.	+	.	ID=Os03t0213200-01;Name=Os03t0213200-01;Locus_id=Os03g0213200;Note=Hypothetical conserved gene.;Transcript_evidence=AK287646 (DDBJ%2C Best hit);ORF_evidence=B9F661 (UniProt);NIAS_FLcDNA=J065090O08;TENOR=Os03t0213200-01;KEGG=Os03t0213200-01
Chr03	irgsp1_rep	five_prime_UTR	5900087	5900096	.	+	.	Parent=Os03t0213200-01
Chr03	irgsp1_rep	CDS	5900097	5900308	.	+	0	Parent=Os03t0213200-01
Chr03	irgsp1_rep	CDS	5900429	5900516	.	+	1	Parent=Os03t0213200-01
Chr03	irgsp1_rep	CDS	5900602	5900643	.	+	0	Parent=Os03t0213200-01
Chr03	irgsp1_rep	CDS	5900761	5900929	.	+	0	Parent=Os03t0213200-01
Chr03	irgsp1_rep	CDS	5901298	5901350	.	+	2	Parent=Os03t0213200-01
Chr03	irgsp1_rep	CDS	5901528	5901746	.	+	0	Parent=Os03t0213200-01
Chr03	irgsp1_rep	CDS	5902013	5902059	.	+	0	Parent=Os03t0213200-01
Chr03	irgsp1_rep	CDS	5902238	5902292	.	+	1	Parent=Os03t0213200-01
Chr03	irgsp1_rep	three_prime_UTR	5902293	5902461	.	+	.	Parent=Os03t0213200-01
Chr03	irgsp1_rep	mRNA	5907703	5916982	.	+	.	ID=Os03t0213300-01;Name=Os03t0213300-01;Locus_id=Os03g0213300;Note=Phosphopantetheine attachment site domain containing protein.;Transcript_evidence=AK121507 (DDBJ%2C Best hit);ORF_evidence=A2XDW6 (UniProt);NIAS_FLcDNA=J033023A02;Expression=AK121507;TENOR=Os03t0213300-01;KEGG=Os03t0213300-01
Chr03	irgsp1_rep	five_prime_UTR	5907703	5907922	.	+	.	Parent=Os03t0213300-01
Chr03	irgsp1_rep	five_prime_UTR	5909753	5909985	.	+	.	Parent=Os03t0213300-01
Chr03	irgsp1_rep	CDS	5909986	5912169	.	+	0	Parent=Os03t0213300-01
Chr03	irgsp1_rep	CDS	5912289	5912404	.	+	0	Parent=Os03t0213300-01
Chr03	irgsp1_rep	CDS	5913255	5914925	.	+	1	Parent=Os03t0213300-01
Chr03	irgsp1_rep	CDS	5915076	5915124	.	+	1	Parent=Os03t0213300-01
Chr03	irgsp1_rep	CDS	5915209	5915447	.	+	0	Parent=Os03t0213300-01
Chr03	irgsp1_rep	CDS	5915579	5915680	.	+	1	Parent=Os03t0213300-01
Chr03	irgsp1_rep	CDS	5916140	5916368	.	+	1	Parent=Os03t0213300-01
Chr03	irgsp1_rep	three_prime_UTR	5916369	5916982	.	+	.	Parent=Os03t0213300-01
Chr03	irgsp1_rep	mRNA	5914573	5917030	.	+	.	ID=Os03t0213300-02;Name=Os03t0213300-02;Locus_id=Os03g0213300;Note=Hypothetical conserved gene.;Transcript_evidence=AK058608 (DDBJ%2C Best hit);ORF_evidence=A2XDW6 (UniProt);NIAS_FLcDNA=001-018-A06;Expression=AK058608;TENOR=Os03t0213300-02;KEGG=Os03t0213300-02
Chr03	irgsp1_rep	CDS	5914573	5914925	.	+	0	Parent=Os03t0213300-02
Chr03	irgsp1_rep	CDS	5915076	5915124	.	+	1	Parent=Os03t0213300-02
Chr03	irgsp1_rep	CDS	5915209	5915447	.	+	0	Parent=Os03t0213300-02
Chr03	irgsp1_rep	CDS	5915579	5915680	.	+	1	Parent=Os03t0213300-02
Chr03	irgsp1_rep	CDS	5916140	5916368	.	+	1	Parent=Os03t0213300-02
Chr03	irgsp1_rep	three_prime_UTR	5916369	5917030	.	+	.	Parent=Os03t0213300-02
Chr03	irgsp1_rep	mRNA	5920140	5931373	.	-	.	ID=Os03t0213400-01;Name=Os03t0213400-01;Locus_id=Os03g0213400;Note=Similar to RNA helicase.;Transcript_evidence=AK099757 (DDBJ%2C Best hit);ORF_evidence=B9F662 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=Helicase%2C C-terminal (IPR001650),Sec63 domain (IPR004179),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J013093D24;Expression=AK099757;TENOR=Os03t0213400-01;KEGG=Os03t0213400-01
Chr03	irgsp1_rep	five_prime_UTR	5931373	5931373	.	-	.	Parent=Os03t0213400-01
Chr03	irgsp1_rep	CDS	5931304	5931372	.	-	0	Parent=Os03t0213400-01
Chr03	irgsp1_rep	CDS	5931077	5931232	.	-	0	Parent=Os03t0213400-01
Chr03	irgsp1_rep	CDS	5930770	5930994	.	-	0	Parent=Os03t0213400-01
Chr03	irgsp1_rep	CDS	5930589	5930690	.	-	0	Parent=Os03t0213400-01
Chr03	irgsp1_rep	CDS	5930403	5930483	.	-	0	Parent=Os03t0213400-01
Chr03	irgsp1_rep	CDS	5930149	5930229	.	-	0	Parent=Os03t0213400-01
Chr03	irgsp1_rep	CDS	5929210	5929410	.	-	0	Parent=Os03t0213400-01
Chr03	irgsp1_rep	CDS	5929009	5929125	.	-	0	Parent=Os03t0213400-01
Chr03	irgsp1_rep	CDS	5928565	5928687	.	-	0	Parent=Os03t0213400-01
Chr03	irgsp1_rep	CDS	5928408	5928497	.	-	0	Parent=Os03t0213400-01
Chr03	irgsp1_rep	CDS	5928204	5928329	.	-	0	Parent=Os03t0213400-01
Chr03	irgsp1_rep	CDS	5928027	5928089	.	-	0	Parent=Os03t0213400-01
Chr03	irgsp1_rep	CDS	5927747	5927835	.	-	0	Parent=Os03t0213400-01
Chr03	irgsp1_rep	CDS	5927073	5927163	.	-	1	Parent=Os03t0213400-01
Chr03	irgsp1_rep	CDS	5926108	5926257	.	-	0	Parent=Os03t0213400-01
Chr03	irgsp1_rep	CDS	5925835	5926026	.	-	0	Parent=Os03t0213400-01
Chr03	irgsp1_rep	CDS	5925617	5925682	.	-	0	Parent=Os03t0213400-01
Chr03	irgsp1_rep	CDS	5925387	5925542	.	-	0	Parent=Os03t0213400-01
Chr03	irgsp1_rep	CDS	5925152	5925295	.	-	0	Parent=Os03t0213400-01
Chr03	irgsp1_rep	CDS	5924713	5924780	.	-	0	Parent=Os03t0213400-01
Chr03	irgsp1_rep	CDS	5924455	5924620	.	-	1	Parent=Os03t0213400-01
Chr03	irgsp1_rep	CDS	5924283	5924345	.	-	0	Parent=Os03t0213400-01
Chr03	irgsp1_rep	CDS	5923645	5923740	.	-	0	Parent=Os03t0213400-01
Chr03	irgsp1_rep	CDS	5923346	5923513	.	-	0	Parent=Os03t0213400-01
Chr03	irgsp1_rep	CDS	5923046	5923216	.	-	0	Parent=Os03t0213400-01
Chr03	irgsp1_rep	CDS	5921991	5922140	.	-	0	Parent=Os03t0213400-01
Chr03	irgsp1_rep	CDS	5921324	5921455	.	-	0	Parent=Os03t0213400-01
Chr03	irgsp1_rep	CDS	5920511	5920594	.	-	0	Parent=Os03t0213400-01
Chr03	irgsp1_rep	three_prime_UTR	5920140	5920510	.	-	.	Parent=Os03t0213400-01
Chr03	irgsp1_rep	mRNA	5920111	5930658	.	-	.	ID=Os03t0213400-02;Name=Os03t0213400-02;Locus_id=Os03g0213400;Note=Similar to cDNA clone:J013093D24%2C full insert sequence.;Transcript_evidence=AK120639 (DDBJ%2C Best hit);ORF_evidence=Q10Q15 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=Sec63 domain (IPR004179),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J013153O16;Expression=AK120639;TENOR=Os03t0213400-02;KEGG=Os03t0213400-02
Chr03	irgsp1_rep	five_prime_UTR	5930658	5930658	.	-	.	Parent=Os03t0213400-02
Chr03	irgsp1_rep	CDS	5930589	5930657	.	-	0	Parent=Os03t0213400-02
Chr03	irgsp1_rep	CDS	5930403	5930483	.	-	0	Parent=Os03t0213400-02
Chr03	irgsp1_rep	CDS	5930149	5930229	.	-	0	Parent=Os03t0213400-02
Chr03	irgsp1_rep	CDS	5929210	5929410	.	-	0	Parent=Os03t0213400-02
Chr03	irgsp1_rep	CDS	5929009	5929125	.	-	0	Parent=Os03t0213400-02
Chr03	irgsp1_rep	CDS	5928565	5928687	.	-	0	Parent=Os03t0213400-02
Chr03	irgsp1_rep	CDS	5928408	5928497	.	-	0	Parent=Os03t0213400-02
Chr03	irgsp1_rep	CDS	5928204	5928329	.	-	0	Parent=Os03t0213400-02
Chr03	irgsp1_rep	CDS	5928077	5928100	.	-	0	Parent=Os03t0213400-02
Chr03	irgsp1_rep	three_prime_UTR	5928027	5928076	.	-	.	Parent=Os03t0213400-02
Chr03	irgsp1_rep	three_prime_UTR	5927747	5927835	.	-	.	Parent=Os03t0213400-02
Chr03	irgsp1_rep	three_prime_UTR	5927073	5927163	.	-	.	Parent=Os03t0213400-02
Chr03	irgsp1_rep	three_prime_UTR	5926108	5926257	.	-	.	Parent=Os03t0213400-02
Chr03	irgsp1_rep	three_prime_UTR	5925835	5926026	.	-	.	Parent=Os03t0213400-02
Chr03	irgsp1_rep	three_prime_UTR	5925617	5925682	.	-	.	Parent=Os03t0213400-02
Chr03	irgsp1_rep	three_prime_UTR	5925387	5925542	.	-	.	Parent=Os03t0213400-02
Chr03	irgsp1_rep	three_prime_UTR	5925152	5925295	.	-	.	Parent=Os03t0213400-02
Chr03	irgsp1_rep	three_prime_UTR	5924713	5924780	.	-	.	Parent=Os03t0213400-02
Chr03	irgsp1_rep	three_prime_UTR	5924455	5924620	.	-	.	Parent=Os03t0213400-02
Chr03	irgsp1_rep	three_prime_UTR	5924283	5924345	.	-	.	Parent=Os03t0213400-02
Chr03	irgsp1_rep	three_prime_UTR	5923645	5923740	.	-	.	Parent=Os03t0213400-02
Chr03	irgsp1_rep	three_prime_UTR	5923346	5923513	.	-	.	Parent=Os03t0213400-02
Chr03	irgsp1_rep	three_prime_UTR	5923046	5923216	.	-	.	Parent=Os03t0213400-02
Chr03	irgsp1_rep	three_prime_UTR	5921991	5922140	.	-	.	Parent=Os03t0213400-02
Chr03	irgsp1_rep	three_prime_UTR	5921324	5921455	.	-	.	Parent=Os03t0213400-02
Chr03	irgsp1_rep	three_prime_UTR	5920111	5920594	.	-	.	Parent=Os03t0213400-02
Chr03	irgsp1_rep	mRNA	5941804	5943541	.	+	.	ID=Os03t0213500-01;Name=Os03t0213500-01;Locus_id=Os03g0213500;Note=Conserved hypothetical protein.;Transcript_evidence=AK066426 (DDBJ%2C Best hit);ORF_evidence=A2XDW8 (UniProt);NIAS_FLcDNA=J013063F19;Expression=AK066426;TENOR=Os03t0213500-01;KEGG=Os03t0213500-01
Chr03	irgsp1_rep	five_prime_UTR	5941804	5941887	.	+	.	Parent=Os03t0213500-01
Chr03	irgsp1_rep	five_prime_UTR	5942649	5942751	.	+	.	Parent=Os03t0213500-01
Chr03	irgsp1_rep	CDS	5942752	5943240	.	+	0	Parent=Os03t0213500-01
Chr03	irgsp1_rep	three_prime_UTR	5943241	5943541	.	+	.	Parent=Os03t0213500-01
Chr03	irgsp1_rep	mRNA	5946380	5955447	.	+	.	ID=Os03t0213600-01;Name=Os03t0213600-01;Locus_id=Os03g0213600;Note=Conserved hypothetical protein.;Transcript_evidence=AK100407 (DDBJ%2C Best hit);ORF_evidence=B9F663 (UniProt);NIAS_FLcDNA=J023087D12;Expression=AK100407;TENOR=Os03t0213600-01;KEGG=Os03t0213600-01
Chr03	irgsp1_rep	five_prime_UTR	5946380	5946505	.	+	.	Parent=Os03t0213600-01
Chr03	irgsp1_rep	CDS	5946506	5946649	.	+	0	Parent=Os03t0213600-01
Chr03	irgsp1_rep	CDS	5947844	5947926	.	+	0	Parent=Os03t0213600-01
Chr03	irgsp1_rep	CDS	5949167	5950437	.	+	1	Parent=Os03t0213600-01
Chr03	irgsp1_rep	CDS	5950704	5950767	.	+	2	Parent=Os03t0213600-01
Chr03	irgsp1_rep	CDS	5951342	5951563	.	+	1	Parent=Os03t0213600-01
Chr03	irgsp1_rep	CDS	5952132	5952253	.	+	1	Parent=Os03t0213600-01
Chr03	irgsp1_rep	CDS	5952611	5952892	.	+	2	Parent=Os03t0213600-01
Chr03	irgsp1_rep	CDS	5952992	5953563	.	+	2	Parent=Os03t0213600-01
Chr03	irgsp1_rep	CDS	5954351	5954474	.	+	0	Parent=Os03t0213600-01
Chr03	irgsp1_rep	CDS	5954971	5955221	.	+	2	Parent=Os03t0213600-01
Chr03	irgsp1_rep	three_prime_UTR	5955222	5955447	.	+	.	Parent=Os03t0213600-01
Chr03	irgsp1_rep	mRNA	5955407	5960532	.	-	.	ID=Os03t0213700-01;Name=Os03t0213700-01;Locus_id=Os03g0213700;CGSNL Gene Symbol=RUS3;CGSNL Gene Name=ROOT UV-B SENSITIVE 3;Oryzabase Gene Symbol Synonym(s)=OsRUS3;Note=Protein of unknown function DUF647 domain containing protein.;Transcript_evidence=AK067637 (DDBJ%2C Best hit);ORF_evidence=B9F664 (UniProt);InterPro=Protein of unknown function DUF647 (IPR006968);NIAS_FLcDNA=J013109I22;Oryzabase=21449;TENOR=Os03t0213700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	5960375	5960532	.	-	.	Parent=Os03t0213700-01
Chr03	irgsp1_rep	CDS	5960214	5960374	.	-	0	Parent=Os03t0213700-01
Chr03	irgsp1_rep	CDS	5960073	5960130	.	-	1	Parent=Os03t0213700-01
Chr03	irgsp1_rep	CDS	5959632	5959691	.	-	0	Parent=Os03t0213700-01
Chr03	irgsp1_rep	CDS	5959474	5959512	.	-	0	Parent=Os03t0213700-01
Chr03	irgsp1_rep	CDS	5959229	5959369	.	-	0	Parent=Os03t0213700-01
Chr03	irgsp1_rep	three_prime_UTR	5958399	5959228	.	-	.	Parent=Os03t0213700-01
Chr03	irgsp1_rep	three_prime_UTR	5958226	5958308	.	-	.	Parent=Os03t0213700-01
Chr03	irgsp1_rep	three_prime_UTR	5958005	5958160	.	-	.	Parent=Os03t0213700-01
Chr03	irgsp1_rep	three_prime_UTR	5957391	5957483	.	-	.	Parent=Os03t0213700-01
Chr03	irgsp1_rep	three_prime_UTR	5956388	5956915	.	-	.	Parent=Os03t0213700-01
Chr03	irgsp1_rep	three_prime_UTR	5955407	5955721	.	-	.	Parent=Os03t0213700-01
Chr03	irgsp1_rep	mRNA	5955596	5960344	.	+	.	ID=Os03t0213750-00;Name=Os03t0213750-00;Locus_id=Os03g0213750;Note=Non-protein coding transcript.;Transcript_evidence=tplb0056b08 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os03t0213750-00
Chr03	irgsp1_rep	exon	5955596	5955716	.	+	.	Parent=Os03t0213750-00
Chr03	irgsp1_rep	exon	5956383	5956592	.	+	.	Parent=Os03t0213750-00
Chr03	irgsp1_rep	exon	5956770	5956908	.	+	.	Parent=Os03t0213750-00
Chr03	irgsp1_rep	exon	5957382	5957483	.	+	.	Parent=Os03t0213750-00
Chr03	irgsp1_rep	exon	5958005	5958141	.	+	.	Parent=Os03t0213750-00
Chr03	irgsp1_rep	exon	5958234	5958319	.	+	.	Parent=Os03t0213750-00
Chr03	irgsp1_rep	exon	5958411	5958479	.	+	.	Parent=Os03t0213750-00
Chr03	irgsp1_rep	exon	5958756	5958813	.	+	.	Parent=Os03t0213750-00
Chr03	irgsp1_rep	exon	5958955	5959021	.	+	.	Parent=Os03t0213750-00
Chr03	irgsp1_rep	exon	5959307	5959396	.	+	.	Parent=Os03t0213750-00
Chr03	irgsp1_rep	exon	5959625	5959718	.	+	.	Parent=Os03t0213750-00
Chr03	irgsp1_rep	exon	5960097	5960149	.	+	.	Parent=Os03t0213750-00
Chr03	irgsp1_rep	exon	5960235	5960344	.	+	.	Parent=Os03t0213750-00
Chr03	irgsp1_rep	mRNA	5960793	5964717	.	-	.	ID=Os03t0213800-01;Name=Os03t0213800-01;Locus_id=Os03g0213800;CGSNL Gene Symbol=MSCP;CGSNL Gene Name=MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsMSCP;Oryzabase Gene Name Synonym(s)=mitochondrial substrate carrier family protein;Note=Mitochondrial substrate carrier family protein.;Transcript_evidence=AK103114 (DDBJ%2C Best hit);ORF_evidence=B6T2V1 (UniProt);InterPro=Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J033119F13;Oryzabase=23700;Expression=AK103114;TENOR=Os03t0213800-01;KEGG=Os03t0213800-01
Chr03	irgsp1_rep	five_prime_UTR	5964598	5964717	.	-	.	Parent=Os03t0213800-01
Chr03	irgsp1_rep	CDS	5964492	5964597	.	-	0	Parent=Os03t0213800-01
Chr03	irgsp1_rep	CDS	5963791	5963906	.	-	2	Parent=Os03t0213800-01
Chr03	irgsp1_rep	CDS	5963628	5963685	.	-	0	Parent=Os03t0213800-01
Chr03	irgsp1_rep	CDS	5963343	5963492	.	-	2	Parent=Os03t0213800-01
Chr03	irgsp1_rep	CDS	5962867	5963077	.	-	2	Parent=Os03t0213800-01
Chr03	irgsp1_rep	CDS	5962413	5962458	.	-	1	Parent=Os03t0213800-01
Chr03	irgsp1_rep	CDS	5961794	5961914	.	-	0	Parent=Os03t0213800-01
Chr03	irgsp1_rep	CDS	5961605	5961677	.	-	2	Parent=Os03t0213800-01
Chr03	irgsp1_rep	CDS	5961209	5961437	.	-	1	Parent=Os03t0213800-01
Chr03	irgsp1_rep	three_prime_UTR	5960793	5961208	.	-	.	Parent=Os03t0213800-01
Chr03	irgsp1_rep	mRNA	5967215	5973703	.	+	.	ID=Os03t0213900-01;Name=Os03t0213900-01;Locus_id=Os03g0213900;Note=Conserved hypothetical protein.;Transcript_evidence=AK066543 (DDBJ%2C Best hit);ORF_evidence=Q10Q10 (UniProt);NIAS_FLcDNA=J013069G15;Expression=AK066543;TENOR=Os03t0213900-01;KEGG=Os03t0213900-01
Chr03	irgsp1_rep	five_prime_UTR	5967215	5967341	.	+	.	Parent=Os03t0213900-01
Chr03	irgsp1_rep	CDS	5967342	5967403	.	+	0	Parent=Os03t0213900-01
Chr03	irgsp1_rep	CDS	5967545	5967773	.	+	1	Parent=Os03t0213900-01
Chr03	irgsp1_rep	CDS	5967876	5967974	.	+	0	Parent=Os03t0213900-01
Chr03	irgsp1_rep	CDS	5968088	5968122	.	+	0	Parent=Os03t0213900-01
Chr03	irgsp1_rep	CDS	5968200	5968275	.	+	1	Parent=Os03t0213900-01
Chr03	irgsp1_rep	CDS	5969058	5969168	.	+	0	Parent=Os03t0213900-01
Chr03	irgsp1_rep	CDS	5969553	5969636	.	+	0	Parent=Os03t0213900-01
Chr03	irgsp1_rep	three_prime_UTR	5969637	5969901	.	+	.	Parent=Os03t0213900-01
Chr03	irgsp1_rep	three_prime_UTR	5969995	5970112	.	+	.	Parent=Os03t0213900-01
Chr03	irgsp1_rep	three_prime_UTR	5970553	5971048	.	+	.	Parent=Os03t0213900-01
Chr03	irgsp1_rep	three_prime_UTR	5971769	5973084	.	+	.	Parent=Os03t0213900-01
Chr03	irgsp1_rep	three_prime_UTR	5973174	5973703	.	+	.	Parent=Os03t0213900-01
Chr03	irgsp1_rep	mRNA	5969993	5973703	.	+	.	ID=Os03t0213900-02;Name=Os03t0213900-02;Locus_id=Os03g0213900;Note=Similar to ROUGH SHEATH2-interacting KH-domain protein.;Transcript_evidence=AK061935 (DDBJ%2C Best hit);ORF_evidence=B6SV11 (UniProt);NIAS_FLcDNA=001-042-D04;Expression=AK061935;TENOR=Os03t0213900-02;KEGG=Os03t0213900-02
Chr03	irgsp1_rep	five_prime_UTR	5969993	5969993	.	+	.	Parent=Os03t0213900-02
Chr03	irgsp1_rep	CDS	5969994	5970112	.	+	0	Parent=Os03t0213900-02
Chr03	irgsp1_rep	CDS	5970553	5971048	.	+	1	Parent=Os03t0213900-02
Chr03	irgsp1_rep	CDS	5972553	5972827	.	+	0	Parent=Os03t0213900-02
Chr03	irgsp1_rep	CDS	5972948	5973084	.	+	1	Parent=Os03t0213900-02
Chr03	irgsp1_rep	CDS	5973174	5973298	.	+	2	Parent=Os03t0213900-02
Chr03	irgsp1_rep	three_prime_UTR	5973299	5973703	.	+	.	Parent=Os03t0213900-02
Chr03	irgsp1_rep	mRNA	5973919	5979059	.	+	.	ID=Os03t0214000-01;Name=Os03t0214000-01;Locus_id=Os03g0214000;CGSNL Gene Symbol=PAP1A;CGSNL Gene Name=PURPLE ACID PHOSPHATASE 1A;Oryzabase Gene Symbol Synonym(s)=OsPAP1a%2C NPP3%2C OsNPP3;Oryzabase Gene Name Synonym(s)=purple acid phosphatase 1a%2C Nucleotide pyrophosphatase/phosphodiesterase 3;Note=Similar to Diphosphonucleotide phosphatase 1 precursor.;Transcript_evidence=AK101976 (DDBJ%2C Best hit);ORF_evidence=NP_001152048.1 (RefSeq);GO=Molecular Function: acid phosphatase activity (GO:0003993),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: metal ion binding (GO:0046872);InterPro=Metallophosphoesterase domain (IPR004843),Purple acid phosphatase-like%2C N-terminal (IPR008963),Purple acid phosphatase%2C N-terminal (IPR015914);NIAS_FLcDNA=J033076O10;Oryzabase=11372;Expression=AK101976;TENOR=Os03t0214000-01;KEGG=Os03t0214000-01
Chr03	irgsp1_rep	five_prime_UTR	5973919	5974065	.	+	.	Parent=Os03t0214000-01
Chr03	irgsp1_rep	CDS	5974066	5974245	.	+	0	Parent=Os03t0214000-01
Chr03	irgsp1_rep	CDS	5974533	5974624	.	+	0	Parent=Os03t0214000-01
Chr03	irgsp1_rep	CDS	5974738	5974804	.	+	1	Parent=Os03t0214000-01
Chr03	irgsp1_rep	CDS	5974907	5975029	.	+	0	Parent=Os03t0214000-01
Chr03	irgsp1_rep	CDS	5975198	5975290	.	+	0	Parent=Os03t0214000-01
Chr03	irgsp1_rep	CDS	5975655	5975784	.	+	0	Parent=Os03t0214000-01
Chr03	irgsp1_rep	CDS	5975989	5976070	.	+	2	Parent=Os03t0214000-01
Chr03	irgsp1_rep	CDS	5976188	5976320	.	+	1	Parent=Os03t0214000-01
Chr03	irgsp1_rep	CDS	5976752	5976957	.	+	0	Parent=Os03t0214000-01
Chr03	irgsp1_rep	CDS	5977044	5977169	.	+	1	Parent=Os03t0214000-01
Chr03	irgsp1_rep	CDS	5977530	5977839	.	+	1	Parent=Os03t0214000-01
Chr03	irgsp1_rep	CDS	5978657	5978962	.	+	0	Parent=Os03t0214000-01
Chr03	irgsp1_rep	three_prime_UTR	5978963	5979059	.	+	.	Parent=Os03t0214000-01
Chr03	irgsp1_rep	mRNA	5974913	5979076	.	+	.	ID=Os03t0214000-02;Name=Os03t0214000-02;Locus_id=Os03g0214000;CGSNL Gene Symbol=PAP1A;CGSNL Gene Name=PURPLE ACID PHOSPHATASE 1A;Oryzabase Gene Symbol Synonym(s)=OsPAP1a%2C NPP3%2C OsNPP3;Oryzabase Gene Name Synonym(s)=purple acid phosphatase 1a%2C Nucleotide pyrophosphatase/phosphodiesterase 3;Note=Similar to nucleotide pyrophosphatase/phosphodiesterase.;Transcript_evidence=AK063756 (DDBJ%2C Best hit);ORF_evidence=NP_001152048.1 (RefSeq);GO=Molecular Function: acid phosphatase activity (GO:0003993),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: metal ion binding (GO:0046872);InterPro=Metallophosphoesterase domain (IPR004843),Purple acid phosphatase-like%2C N-terminal (IPR008963),Purple acid phosphatase%2C N-terminal (IPR015914);NIAS_FLcDNA=001-121-A07;Oryzabase=11372;TENOR=Os03t0214000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	5974913	5974960	.	+	.	Parent=Os03t0214000-02
Chr03	irgsp1_rep	CDS	5974961	5975029	.	+	0	Parent=Os03t0214000-02
Chr03	irgsp1_rep	CDS	5975198	5975290	.	+	0	Parent=Os03t0214000-02
Chr03	irgsp1_rep	CDS	5975655	5975784	.	+	0	Parent=Os03t0214000-02
Chr03	irgsp1_rep	CDS	5975989	5976070	.	+	2	Parent=Os03t0214000-02
Chr03	irgsp1_rep	CDS	5976188	5976320	.	+	1	Parent=Os03t0214000-02
Chr03	irgsp1_rep	CDS	5976752	5976957	.	+	0	Parent=Os03t0214000-02
Chr03	irgsp1_rep	CDS	5977044	5977169	.	+	1	Parent=Os03t0214000-02
Chr03	irgsp1_rep	CDS	5977530	5977839	.	+	1	Parent=Os03t0214000-02
Chr03	irgsp1_rep	CDS	5978657	5978962	.	+	0	Parent=Os03t0214000-02
Chr03	irgsp1_rep	three_prime_UTR	5978963	5979076	.	+	.	Parent=Os03t0214000-02
Chr03	irgsp1_rep	mRNA	5976750	5978974	.	-	.	ID=Os03t0214050-00;Name=Os03t0214050-00;Locus_id=Os03g0214050;Note=Hypothetical protein.;Transcript_evidence=tplb0049m13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0214050-00
Chr03	irgsp1_rep	CDS	5978633	5978974	.	-	0	Parent=Os03t0214050-00
Chr03	irgsp1_rep	CDS	5977812	5977823	.	-	0	Parent=Os03t0214050-00
Chr03	irgsp1_rep	three_prime_UTR	5977546	5977811	.	-	.	Parent=Os03t0214050-00
Chr03	irgsp1_rep	three_prime_UTR	5977051	5977186	.	-	.	Parent=Os03t0214050-00
Chr03	irgsp1_rep	three_prime_UTR	5976750	5976960	.	-	.	Parent=Os03t0214050-00
Chr03	irgsp1_rep	mRNA	5979594	5983020	.	+	.	ID=Os03t0214100-01;Name=Os03t0214100-01;Locus_id=Os03g0214100;CGSNL Gene Symbol=RPA1;CGSNL Gene Name=REPLICATION PROTEIN A 1;Oryzabase Gene Symbol Synonym(s)=OsRPA1%2C OsRPA70b%2C RPA70b;Oryzabase Gene Name Synonym(s)=replication protein A1%2C Replication protein A 70kDa subunit b%2C RPA70kDa subunit b;Note=Replication protein A1.;Transcript_evidence=AK060582 (DDBJ%2C Best hit);ORF_evidence=O24183 (UniProt);GO=Biological Process: DNA replication (GO:0006260),Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677);InterPro=Nucleic acid binding%2C OB-fold%2C tRNA/helicase-type (IPR004365),Replication factor-a protein 1 Rpa1 (IPR004591),Replication factor-A protein 1%2C N-terminal (IPR007199),Nucleic acid-binding%2C OB-fold (IPR012340),Replication factor A%2C C-terminal (IPR013955),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=001-023-H05;Oryzabase=2986;Expression=AK060582;TENOR=Os03t0214100-01;KEGG=Os03t0214100-01
Chr03	irgsp1_rep	five_prime_UTR	5979594	5979682	.	+	.	Parent=Os03t0214100-01
Chr03	irgsp1_rep	CDS	5979683	5979828	.	+	0	Parent=Os03t0214100-01
Chr03	irgsp1_rep	CDS	5979967	5980113	.	+	1	Parent=Os03t0214100-01
Chr03	irgsp1_rep	CDS	5980213	5980437	.	+	1	Parent=Os03t0214100-01
Chr03	irgsp1_rep	CDS	5980542	5980719	.	+	1	Parent=Os03t0214100-01
Chr03	irgsp1_rep	CDS	5980834	5981101	.	+	0	Parent=Os03t0214100-01
Chr03	irgsp1_rep	CDS	5981190	5981292	.	+	2	Parent=Os03t0214100-01
Chr03	irgsp1_rep	CDS	5981388	5981512	.	+	1	Parent=Os03t0214100-01
Chr03	irgsp1_rep	CDS	5981597	5981675	.	+	2	Parent=Os03t0214100-01
Chr03	irgsp1_rep	CDS	5981756	5981900	.	+	1	Parent=Os03t0214100-01
Chr03	irgsp1_rep	CDS	5982006	5982166	.	+	0	Parent=Os03t0214100-01
Chr03	irgsp1_rep	CDS	5982256	5982376	.	+	1	Parent=Os03t0214100-01
Chr03	irgsp1_rep	CDS	5982587	5982781	.	+	0	Parent=Os03t0214100-01
Chr03	irgsp1_rep	three_prime_UTR	5982782	5983020	.	+	.	Parent=Os03t0214100-01
Chr03	irgsp1_rep	mRNA	5983514	5988740	.	-	.	ID=Os03t0214200-01;Name=Os03t0214200-01;Locus_id=Os03g0214200;RAP-DB Gene Symbol Synonym(s)=MODD;RAP-DB Gene Name Synonym(s)=Mediator of OsbZIP46 deactivation and degradation;Oryzabase Gene Symbol Synonym(s)=MODD;Oryzabase Gene Name Synonym(s)=Mediator of OsbZIP46 deactivation and degradation;Note=Mediator of OsbZIP46 deactivation and degradation%2C Negative regulation of ABA signaling and drought tolerance;Transcript_evidence=AK100623;ORF_evidence=Q10Q07;GO=Biological Process: signal transduction (GO:0007165);InterPro=Ninja family (IPR031307),Ethylene-responsive binding factor-associated repression (IPR012463),Putative nuclear localisation signal (IPR032310),Jas TPL-binding domain (IPR032308);NIAS_FLcDNA=J023108I10;Manual Curation=October 17%2C 2016;Literature_PMID=27468891;Oryzabase=21330;Expression=AK100623;TENOR=Os03t0214200-01;KEGG=Os03t0214200-01
Chr03	irgsp1_rep	five_prime_UTR	5988673	5988740	.	-	.	Parent=Os03t0214200-01
Chr03	irgsp1_rep	five_prime_UTR	5988455	5988520	.	-	.	Parent=Os03t0214200-01
Chr03	irgsp1_rep	CDS	5988040	5988454	.	-	0	Parent=Os03t0214200-01
Chr03	irgsp1_rep	CDS	5984734	5985108	.	-	2	Parent=Os03t0214200-01
Chr03	irgsp1_rep	CDS	5983707	5984122	.	-	2	Parent=Os03t0214200-01
Chr03	irgsp1_rep	three_prime_UTR	5983514	5983706	.	-	.	Parent=Os03t0214200-01
Chr03	irgsp1_rep	mRNA	5983462	5988738	.	-	.	ID=Os03t0214200-02;Name=Os03t0214200-02;Locus_id=Os03g0214200;Oryzabase Gene Symbol Synonym(s)=MODD;Oryzabase Gene Name Synonym(s)=Mediator of OsbZIP46 deactivation and degradation;Note=Similar to Ninja-family protein 1.;Transcript_evidence=AK068799 (DDBJ%2C Best hit);ORF_evidence=B4FAF3 (UniProt);InterPro=Protein of unknown function DUF1675 (IPR012463);NIAS_FLcDNA=J013161C22;Oryzabase=21330;TENOR=Os03t0214200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	5988455	5988738	.	-	.	Parent=Os03t0214200-02
Chr03	irgsp1_rep	CDS	5988040	5988454	.	-	0	Parent=Os03t0214200-02
Chr03	irgsp1_rep	CDS	5984734	5985108	.	-	2	Parent=Os03t0214200-02
Chr03	irgsp1_rep	CDS	5983961	5984122	.	-	2	Parent=Os03t0214200-02
Chr03	irgsp1_rep	CDS	5983835	5983878	.	-	2	Parent=Os03t0214200-02
Chr03	irgsp1_rep	three_prime_UTR	5983462	5983834	.	-	.	Parent=Os03t0214200-02
Chr03	irgsp1_rep	mRNA	5994179	5997434	.	-	.	ID=Os03t0214400-01;Name=Os03t0214400-01;Locus_id=Os03g0214400;CGSNL Gene Symbol=DGD2A;CGSNL Gene Name=DIGALACTOSYLDIACYLGLYCEROL SYNTHASE 2 ALPHA;Oryzabase Gene Symbol Synonym(s)=OsDGD2alpha DGD2alpha%2C OsDGD2A;Oryzabase Gene Name Synonym(s)=Digalactosyldiacylglycerol synthase 2 alpha%2C DGDG synthase 2 alpha;Note=Similar to Digalactosyldiacylglycerol synthase 2.;Transcript_evidence=AK067931 (DDBJ%2C Best hit);ORF_evidence=Q6DW73 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058);InterPro=Glycosyl transferase%2C family 1 (IPR001296);NIAS_FLcDNA=J013127L22;Oryzabase=23296;Expression=AK067931;TENOR=Os03t0214400-01;KEGG=Os03t0214400-01 (EC:2.4.1.241)
Chr03	irgsp1_rep	five_prime_UTR	5997333	5997434	.	-	.	Parent=Os03t0214400-01
Chr03	irgsp1_rep	five_prime_UTR	5996937	5996990	.	-	.	Parent=Os03t0214400-01
Chr03	irgsp1_rep	CDS	5996655	5996936	.	-	0	Parent=Os03t0214400-01
Chr03	irgsp1_rep	CDS	5995921	5996187	.	-	0	Parent=Os03t0214400-01
Chr03	irgsp1_rep	CDS	5995285	5995634	.	-	0	Parent=Os03t0214400-01
Chr03	irgsp1_rep	CDS	5994416	5994947	.	-	1	Parent=Os03t0214400-01
Chr03	irgsp1_rep	three_prime_UTR	5994179	5994415	.	-	.	Parent=Os03t0214400-01
Chr03	irgsp1_rep	mRNA	5999908	6003675	.	+	.	ID=Os03t0214600-01;Name=Os03t0214600-01;Locus_id=Os03g0214600;CGSNL Gene Symbol=RPN9B;CGSNL Gene Name=19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 9B;Oryzabase Gene Symbol Synonym(s)=OsRpn9b%2C Rpn9b;Oryzabase Gene Name Synonym(s)=19S regulatory particle non-ATPase subunit 9b%2C RP non-ATPase 9b;Note=Similar to 26S proteasome subunit-like protein (26S proteasome subunit RPN9a).;Transcript_evidence=AK101240 (DDBJ%2C Best hit),AK064850 (DDBJ%2C Best hit),AK068605 (DDBJ%2C Best hit);ORF_evidence=NP_001152194.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Proteasome component (PCI) domain (IPR000717);NIAS_FLcDNA=J033031O16,J013000H02,J013157F16;Oryzabase=20569;TENOR=Os03t0214600-01
Chr03	irgsp1_rep	five_prime_UTR	5999908	6000017	.	+	.	Parent=Os03t0214600-01
Chr03	irgsp1_rep	CDS	6000018	6000164	.	+	0	Parent=Os03t0214600-01
Chr03	irgsp1_rep	CDS	6000712	6001158	.	+	0	Parent=Os03t0214600-01
Chr03	irgsp1_rep	CDS	6001272	6001352	.	+	0	Parent=Os03t0214600-01
Chr03	irgsp1_rep	CDS	6002058	6002254	.	+	0	Parent=Os03t0214600-01
Chr03	irgsp1_rep	CDS	6002350	6002449	.	+	1	Parent=Os03t0214600-01
Chr03	irgsp1_rep	CDS	6003182	6003367	.	+	0	Parent=Os03t0214600-01
Chr03	irgsp1_rep	three_prime_UTR	6003368	6003675	.	+	.	Parent=Os03t0214600-01
Chr03	irgsp1_rep	mRNA	6000734	6003768	.	+	.	ID=Os03t0214600-02;Name=Os03t0214600-02;Locus_id=Os03g0214600;CGSNL Gene Symbol=RPN9B;CGSNL Gene Name=19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 9B;Oryzabase Gene Symbol Synonym(s)=OsRpn9b%2C Rpn9b;Oryzabase Gene Name Synonym(s)=19S regulatory particle non-ATPase subunit 9b%2C RP non-ATPase 9b;Note=Similar to 26S proteasome non-ATPase regulatory subunit 13.;Transcript_evidence=AK061942 (DDBJ%2C Best hit);ORF_evidence=NP_001152194.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Proteasome component (PCI) domain (IPR000717);NIAS_FLcDNA=001-042-D11;Oryzabase=20569;Expression=AK061942;TENOR=Os03t0214600-02;KEGG=Os03t0214600-02
Chr03	irgsp1_rep	five_prime_UTR	6000734	6000735	.	+	.	Parent=Os03t0214600-02
Chr03	irgsp1_rep	CDS	6000736	6001158	.	+	0	Parent=Os03t0214600-02
Chr03	irgsp1_rep	CDS	6001272	6001352	.	+	0	Parent=Os03t0214600-02
Chr03	irgsp1_rep	CDS	6002058	6002254	.	+	0	Parent=Os03t0214600-02
Chr03	irgsp1_rep	CDS	6002350	6002449	.	+	1	Parent=Os03t0214600-02
Chr03	irgsp1_rep	CDS	6003182	6003367	.	+	0	Parent=Os03t0214600-02
Chr03	irgsp1_rep	three_prime_UTR	6003368	6003768	.	+	.	Parent=Os03t0214600-02
Chr03	irgsp1_rep	mRNA	6006751	6011719	.	-	.	ID=Os03t0214900-01;Name=Os03t0214900-01;Locus_id=Os03g0214900;Note=Conserved hypothetical protein.;Transcript_evidence=AK100534 (DDBJ%2C Best hit);ORF_evidence=B9F667 (UniProt);NIAS_FLcDNA=J023101N06;Expression=AK100534;TENOR=Os03t0214900-01;KEGG=Os03t0214900-01
Chr03	irgsp1_rep	five_prime_UTR	6011431	6011719	.	-	.	Parent=Os03t0214900-01
Chr03	irgsp1_rep	five_prime_UTR	6011142	6011177	.	-	.	Parent=Os03t0214900-01
Chr03	irgsp1_rep	CDS	6010514	6011141	.	-	0	Parent=Os03t0214900-01
Chr03	irgsp1_rep	CDS	6009571	6010126	.	-	2	Parent=Os03t0214900-01
Chr03	irgsp1_rep	CDS	6007695	6009420	.	-	1	Parent=Os03t0214900-01
Chr03	irgsp1_rep	CDS	6007150	6007179	.	-	0	Parent=Os03t0214900-01
Chr03	irgsp1_rep	three_prime_UTR	6006751	6007149	.	-	.	Parent=Os03t0214900-01
Chr03	irgsp1_rep	mRNA	6013161	6017199	.	-	.	ID=Os03t0215000-01;Name=Os03t0215000-01;Locus_id=Os03g0215000;Note=Similar to integral membrane family protein.;Transcript_evidence=AK067049 (DDBJ%2C Best hit);ORF_evidence=XP_002889076.1 (RefSeq);InterPro=Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=J013092A05;TENOR=Os03t0215000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	6016748	6017199	.	-	.	Parent=Os03t0215000-01
Chr03	irgsp1_rep	five_prime_UTR	6016278	6016401	.	-	.	Parent=Os03t0215000-01
Chr03	irgsp1_rep	CDS	6016233	6016277	.	-	0	Parent=Os03t0215000-01
Chr03	irgsp1_rep	CDS	6013586	6014695	.	-	0	Parent=Os03t0215000-01
Chr03	irgsp1_rep	three_prime_UTR	6013161	6013585	.	-	.	Parent=Os03t0215000-01
Chr03	irgsp1_rep	mRNA	6013373	6017086	.	-	.	ID=Os03t0215000-02;Name=Os03t0215000-02;Locus_id=Os03g0215000;Note=Similar to integral membrane family protein.;Transcript_evidence=AK068345 (DDBJ%2C Best hit);ORF_evidence=XP_002889076.1 (RefSeq);InterPro=Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=J013151N10;TENOR=Os03t0215000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	6016748	6017086	.	-	.	Parent=Os03t0215000-02
Chr03	irgsp1_rep	five_prime_UTR	6016278	6016404	.	-	.	Parent=Os03t0215000-02
Chr03	irgsp1_rep	CDS	6016233	6016277	.	-	0	Parent=Os03t0215000-02
Chr03	irgsp1_rep	CDS	6013586	6014695	.	-	0	Parent=Os03t0215000-02
Chr03	irgsp1_rep	three_prime_UTR	6013373	6013585	.	-	.	Parent=Os03t0215000-02
Chr03	irgsp1_rep	mRNA	6013167	6016004	.	-	.	ID=Os03t0215000-03;Name=Os03t0215000-03;Locus_id=Os03g0215000;Note=Similar to integral membrane family protein.;Transcript_evidence=AK100038 (DDBJ%2C Best hit);ORF_evidence=NP_177760.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085);InterPro=UAA transporter (IPR013657);NIAS_FLcDNA=J013151D12;Expression=AK100038;TENOR=Os03t0215000-03;KEGG=Os03t0215000-03
Chr03	irgsp1_rep	five_prime_UTR	6015844	6016004	.	-	.	Parent=Os03t0215000-03
Chr03	irgsp1_rep	CDS	6015814	6015843	.	-	0	Parent=Os03t0215000-03
Chr03	irgsp1_rep	CDS	6013586	6014695	.	-	0	Parent=Os03t0215000-03
Chr03	irgsp1_rep	three_prime_UTR	6013167	6013585	.	-	.	Parent=Os03t0215000-03
Chr03	irgsp1_rep	mRNA	6041245	6048687	.	+	.	ID=Os03t0215200-01;Name=Os03t0215200-01;Locus_id=Os03g0215200;RAP-DB Gene Symbol Synonym(s)=DL%2C dl(lop)%2C lop%2C dl%2C dl1;RAP-DB Gene Name Synonym(s)=DROOPING LEAF%2C drooping leaf%2C drooping leaf-1%2C DL protein%2C Protein DROOPING LEAF%2C Protein CRABS CLAW homolog%2C Protein CRC homolog;CGSNL Gene Symbol=DL;CGSNL Gene Name=DROOPING LEAF;Oryzabase Gene Symbol Synonym(s)=DL%2C dl(lop)%2C lop%2C dl%2C dl1;Oryzabase Gene Name Synonym(s)=drooping leaf%2C drooping leaf-1%2C DL protein%2C Protein DROOPING LEAF%2C Protein CRABS CLAW homolog%2C Protein CRC homolog;Note=Putative transcription factor%2C Carpel specification%2C  Midrib formation;Transcript_evidence=AB106553 (Taichung 65);ORF_evidence=Q76EJ0;InterPro=YABBY protein (IPR006780),High mobility group box domain (IPR009071);Manual Curation=February 3%2C 2015;Literature_PMID=14729915;Oryzabase=2126;TENOR=Os03t0215200-00
Chr03	irgsp1_rep	five_prime_UTR	6041245	6041345	.	+	.	Parent=Os03t0215200-01
Chr03	irgsp1_rep	CDS	6041346	6041414	.	+	0	Parent=Os03t0215200-01
Chr03	irgsp1_rep	CDS	6042295	6042438	.	+	0	Parent=Os03t0215200-01
Chr03	irgsp1_rep	CDS	6043427	6043520	.	+	0	Parent=Os03t0215200-01
Chr03	irgsp1_rep	CDS	6043819	6043867	.	+	2	Parent=Os03t0215200-01
Chr03	irgsp1_rep	CDS	6047696	6047771	.	+	1	Parent=Os03t0215200-01
Chr03	irgsp1_rep	CDS	6047972	6048064	.	+	0	Parent=Os03t0215200-01
Chr03	irgsp1_rep	CDS	6048292	6048357	.	+	0	Parent=Os03t0215200-01
Chr03	irgsp1_rep	three_prime_UTR	6048358	6048687	.	+	.	Parent=Os03t0215200-01
Chr03	irgsp1_rep	mRNA	6052902	6061365	.	-	.	ID=Os03t0215400-01;Name=Os03t0215400-01;Locus_id=Os03g0215400;RAP-DB Gene Symbol Synonym(s)=LHS1%2C OsMADS1%2C LHS%2C lhs1%2C lhs%2C lhs2%2C op%2C nsr%2C MADS1%2C LHS1/OsMADS1%2C Lhs1%2C AFO;RAP-DB Gene Name Synonym(s)=LEAFY HULL STERILE 1%2C MADS box gene1%2C leafy hull sterile1%2C leafy hull sterile 1%2C naked seed rice%2C over developed palea%2C MADS-box transcription factor 1%2C Protein LEAFY HULL STERILE 1%2C Protein SEPALLATA-like%2C abnormal floral organs;CGSNL Gene Symbol=LHS1;CGSNL Gene Name=LEAFY HULL STERILE 1;Oryzabase Gene Symbol Synonym(s)=OsMADS1%2C LHS%2C lhs1%2C lhs%2C lhs2%2C op%2C nsr%2C MADS1%2C LHS1/OsMADS1%2C Lhs1%2C AFO%2C OsLHS1%2C OsLG3b%2C LG3b%2C qLGY3%2C LGY3%2C DLN80%2C OsDLN80;Oryzabase Gene Name Synonym(s)=MADS box gene1%2C leafy hull sterile1%2C leafy hull sterile 1%2C LEAFY HULL STERILE1%2C naked seed rice%2C over developed palea%2C MADS-box transcription factor 1%2C Protein LEAFY HULL STERILE 1%2C Protein SEPALLATA-like%2C abnormal floral organs%2C long grain 3b%2C DLN repressor 80%2C DLN motif protein 80;Note=MADS-domain-containing protein%2C Sexual reproduction;Transcript_evidence=L34271 (Genbank),AK069728 (Genbank),AK070981 (Genbank);ORF_evidence=Q10PZ9 (UniProt),B7EGS6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box (IPR002100),Transcription factor%2C K-box (IPR002487);NIAS_FLcDNA=J023029M13,J023073O08;Manual Curation=February 12%2C 2010;Literature_PMID=7948920,10852934,20107517;Oryzabase=2969;Expression=AK069728;TENOR=Os03t0215400-01;KEGG=Os03t0215400-01
Chr03	irgsp1_rep	five_prime_UTR	6061275	6061365	.	-	.	Parent=Os03t0215400-01
Chr03	irgsp1_rep	CDS	6061090	6061274	.	-	0	Parent=Os03t0215400-01
Chr03	irgsp1_rep	CDS	6055487	6055559	.	-	1	Parent=Os03t0215400-01
Chr03	irgsp1_rep	CDS	6054655	6054716	.	-	0	Parent=Os03t0215400-01
Chr03	irgsp1_rep	CDS	6054435	6054534	.	-	1	Parent=Os03t0215400-01
Chr03	irgsp1_rep	CDS	6054186	6054227	.	-	0	Parent=Os03t0215400-01
Chr03	irgsp1_rep	CDS	6054054	6054095	.	-	0	Parent=Os03t0215400-01
Chr03	irgsp1_rep	CDS	6053681	6053835	.	-	0	Parent=Os03t0215400-01
Chr03	irgsp1_rep	CDS	6053188	6053302	.	-	1	Parent=Os03t0215400-01
Chr03	irgsp1_rep	three_prime_UTR	6052902	6053187	.	-	.	Parent=Os03t0215400-01
Chr03	irgsp1_rep	mRNA	6069091	6069426	.	+	.	ID=Os03t0215600-00;Name=Os03t0215600-00;Locus_id=Os03g0215600;Note=Zinc finger%2C CCHC retroviral-type domain containing protein.;Transcript_evidence=EU950651 (DDBJ);ORF_evidence=longestORF;GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC retroviral-type (IPR013084);TENOR=Os03t0215600-00
Chr03	irgsp1_rep	five_prime_UTR	6069091	6069105	.	+	.	Parent=Os03t0215600-00
Chr03	irgsp1_rep	CDS	6069106	6069287	.	+	0	Parent=Os03t0215600-00
Chr03	irgsp1_rep	CDS	6069373	6069426	.	+	1	Parent=Os03t0215600-00
Chr03	irgsp1_rep	mRNA	6079161	6084477	.	+	.	ID=Os03t0215700-01;Name=Os03t0215700-01;Locus_id=Os03g0215700;Note=Myosin II heavy chain-like family protein.;Transcript_evidence=AK099772 (DDBJ%2C Best hit);ORF_evidence=Q10PZ6 (UniProt);InterPro=Myosin II heavy chain-like (IPR009768);NIAS_FLcDNA=J013095D24;Expression=AK099772;TENOR=Os03t0215700-01;KEGG=Os03t0215700-01
Chr03	irgsp1_rep	five_prime_UTR	6079161	6079239	.	+	.	Parent=Os03t0215700-01
Chr03	irgsp1_rep	five_prime_UTR	6079372	6079454	.	+	.	Parent=Os03t0215700-01
Chr03	irgsp1_rep	CDS	6079455	6079569	.	+	0	Parent=Os03t0215700-01
Chr03	irgsp1_rep	CDS	6081265	6081350	.	+	2	Parent=Os03t0215700-01
Chr03	irgsp1_rep	CDS	6081535	6081600	.	+	0	Parent=Os03t0215700-01
Chr03	irgsp1_rep	CDS	6081914	6082084	.	+	0	Parent=Os03t0215700-01
Chr03	irgsp1_rep	CDS	6082196	6082366	.	+	0	Parent=Os03t0215700-01
Chr03	irgsp1_rep	CDS	6082466	6082621	.	+	0	Parent=Os03t0215700-01
Chr03	irgsp1_rep	CDS	6082825	6082971	.	+	0	Parent=Os03t0215700-01
Chr03	irgsp1_rep	CDS	6083076	6083147	.	+	0	Parent=Os03t0215700-01
Chr03	irgsp1_rep	CDS	6083236	6083799	.	+	0	Parent=Os03t0215700-01
Chr03	irgsp1_rep	three_prime_UTR	6083800	6083861	.	+	.	Parent=Os03t0215700-01
Chr03	irgsp1_rep	three_prime_UTR	6084018	6084477	.	+	.	Parent=Os03t0215700-01
Chr03	irgsp1_rep	mRNA	6085640	6089018	.	+	.	ID=Os03t0215800-01;Name=Os03t0215800-01;Locus_id=Os03g0215800;Note=Pyridoxal phosphate-dependent enzyme%2C beta subunit domain containing protein.;Transcript_evidence=AK071308 (DDBJ%2C Best hit);ORF_evidence=B9F673 (UniProt);GO=Biological Process: cysteine biosynthetic process from serine (GO:0006535),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (IPR001216),Pyridoxal phosphate-dependent enzyme%2C beta subunit (IPR001926);NIAS_FLcDNA=J023083K22;Expression=AK071308;TENOR=Os03t0215800-01;KEGG=Os03t0215800-01 (EC:2.5.1.47)
Chr03	irgsp1_rep	five_prime_UTR	6085640	6085649	.	+	.	Parent=Os03t0215800-01
Chr03	irgsp1_rep	CDS	6085650	6085871	.	+	0	Parent=Os03t0215800-01
Chr03	irgsp1_rep	CDS	6085980	6086054	.	+	0	Parent=Os03t0215800-01
Chr03	irgsp1_rep	CDS	6086983	6087126	.	+	0	Parent=Os03t0215800-01
Chr03	irgsp1_rep	CDS	6087348	6087806	.	+	0	Parent=Os03t0215800-01
Chr03	irgsp1_rep	CDS	6087893	6088128	.	+	0	Parent=Os03t0215800-01
Chr03	irgsp1_rep	CDS	6088420	6088636	.	+	1	Parent=Os03t0215800-01
Chr03	irgsp1_rep	three_prime_UTR	6088637	6089018	.	+	.	Parent=Os03t0215800-01
Chr03	irgsp1_rep	mRNA	6089248	6091523	.	-	.	ID=Os03t0215900-01;Name=Os03t0215900-01;Locus_id=Os03g0215900;RAP-DB Gene Symbol Synonym(s)=OsPPR676%2C OsATP4;RAP-DB Gene Name Synonym(s)=pentatricopeptide repeat protein 676;Oryzabase Gene Symbol Synonym(s)=OsPPR676%2C PPR676;Oryzabase Gene Name Synonym(s)=pentatricopeptide repeat protein 676;Note=Plastid-localized pentatricopeptide repeat (PPR) protein%2C Plant growth and pollen development%2C RNA editing of chloroplast rps8 mRNA;Transcript_evidence=Inferred from literature;ORF_evidence=Q10PZ4;GO=Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical domain superfamily (IPR011990),Pentacotripeptide-repeat region of PRORP (IPR033443),Smr domain (IPR002625),Pentatricopeptide repeat (IPR002885);Manual Curation=September 23%2C 2020;Literature_PMID=32928899,28904339;Oryzabase=14362;TENOR=Os03t0215900-00;Subcellular location=plastid (GO:0009536),chloroplast (GO:0009507)
Chr03	irgsp1_rep	five_prime_UTR	6091496	6091523	.	-	.	Parent=Os03t0215900-01
Chr03	irgsp1_rep	CDS	6089465	6091495	.	-	0	Parent=Os03t0215900-01
Chr03	irgsp1_rep	three_prime_UTR	6089248	6089464	.	-	.	Parent=Os03t0215900-01
Chr03	irgsp1_rep	mRNA	6098433	6100341	.	-	.	ID=Os03t0216000-01;Name=Os03t0216000-01;Locus_id=Os03g0216000;Note=Similar to Zinc-finger protein KNUCKLES.;Transcript_evidence=AK109827 (DDBJ%2C Best hit);ORF_evidence=XP_002465640.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=002-148-B06;Expression=AK109827;TENOR=Os03t0216000-01;KEGG=Os03t0216000-01
Chr03	irgsp1_rep	five_prime_UTR	6100144	6100341	.	-	.	Parent=Os03t0216000-01
Chr03	irgsp1_rep	CDS	6099250	6100143	.	-	0	Parent=Os03t0216000-01
Chr03	irgsp1_rep	three_prime_UTR	6098433	6099249	.	-	.	Parent=Os03t0216000-01
Chr03	irgsp1_rep	mRNA	6115338	6118762	.	+	.	ID=Os03t0216300-01;Name=Os03t0216300-01;Locus_id=Os03g0216300;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK102781 (DDBJ%2C Best hit);ORF_evidence=B8AQT9 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033107K05;Expression=AK102781;TENOR=Os03t0216300-01;KEGG=Os03t0216300-01
Chr03	irgsp1_rep	five_prime_UTR	6115338	6115393	.	+	.	Parent=Os03t0216300-01
Chr03	irgsp1_rep	CDS	6115394	6116995	.	+	0	Parent=Os03t0216300-01
Chr03	irgsp1_rep	three_prime_UTR	6116996	6117101	.	+	.	Parent=Os03t0216300-01
Chr03	irgsp1_rep	three_prime_UTR	6117178	6117278	.	+	.	Parent=Os03t0216300-01
Chr03	irgsp1_rep	three_prime_UTR	6117558	6117635	.	+	.	Parent=Os03t0216300-01
Chr03	irgsp1_rep	three_prime_UTR	6118183	6118762	.	+	.	Parent=Os03t0216300-01
Chr03	irgsp1_rep	mRNA	6115552	6118730	.	+	.	ID=Os03t0216300-02;Name=Os03t0216300-02;Locus_id=Os03g0216300;Note=Hypothetical conserved gene.;Transcript_evidence=AK106411 (DDBJ%2C Best hit);ORF_evidence=B8AQT9 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=002-103-A01;Expression=AK106411;TENOR=Os03t0216300-02;KEGG=Os03t0216300-02
Chr03	irgsp1_rep	five_prime_UTR	6115552	6115552	.	+	.	Parent=Os03t0216300-02
Chr03	irgsp1_rep	CDS	6115553	6116995	.	+	0	Parent=Os03t0216300-02
Chr03	irgsp1_rep	three_prime_UTR	6116996	6117635	.	+	.	Parent=Os03t0216300-02
Chr03	irgsp1_rep	three_prime_UTR	6118183	6118730	.	+	.	Parent=Os03t0216300-02
Chr03	irgsp1_rep	mRNA	6118856	6120196	.	-	.	ID=Os03t0216400-01;Name=Os03t0216400-01;Locus_id=Os03g0216400;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK106498 (DDBJ%2C Best hit);ORF_evidence=B8AQU0 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-105-E05;Expression=AK106498;TENOR=Os03t0216400-01;KEGG=Os03t0216400-01
Chr03	irgsp1_rep	five_prime_UTR	6120171	6120196	.	-	.	Parent=Os03t0216400-01
Chr03	irgsp1_rep	CDS	6118992	6120170	.	-	0	Parent=Os03t0216400-01
Chr03	irgsp1_rep	three_prime_UTR	6118856	6118991	.	-	.	Parent=Os03t0216400-01
Chr03	irgsp1_rep	mRNA	6121324	6122376	.	-	.	ID=Os03t0216500-00;Name=Os03t0216500-00;Locus_id=Os03g0216500;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001049384.1 (RefSeq);TENOR=Os03t0216500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	6121324	6122376	.	-	0	Parent=Os03t0216500-00
Chr03	irgsp1_rep	mRNA	6127334	6131136	.	+	.	ID=Os03t0216600-01;Name=Os03t0216600-01;Locus_id=Os03g0216600;Note=Similar to Alpha-glucosidase (EC 3.2.1.20).;Transcript_evidence=AK066051 (DDBJ%2C Best hit);ORF_evidence=B5U8Z1 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Glycoside hydrolase%2C family 31 (IPR000322),Glycoside hydrolase-type carbohydrate-binding (IPR011013),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J013051B02;Expression=AK066051;TENOR=Os03t0216600-01;KEGG=Os03t0216600-01 (EC:3.2.1.20%2C EC:3.2.1.84)
Chr03	irgsp1_rep	five_prime_UTR	6127334	6127334	.	+	.	Parent=Os03t0216600-01
Chr03	irgsp1_rep	CDS	6127335	6128726	.	+	0	Parent=Os03t0216600-01
Chr03	irgsp1_rep	CDS	6128841	6129114	.	+	0	Parent=Os03t0216600-01
Chr03	irgsp1_rep	CDS	6129192	6129327	.	+	2	Parent=Os03t0216600-01
Chr03	irgsp1_rep	CDS	6129558	6129768	.	+	1	Parent=Os03t0216600-01
Chr03	irgsp1_rep	CDS	6129850	6130056	.	+	0	Parent=Os03t0216600-01
Chr03	irgsp1_rep	CDS	6130488	6130856	.	+	0	Parent=Os03t0216600-01
Chr03	irgsp1_rep	three_prime_UTR	6130857	6131136	.	+	.	Parent=Os03t0216600-01
Chr03	irgsp1_rep	mRNA	6128597	6131133	.	+	.	ID=Os03t0216600-02;Name=Os03t0216600-02;Locus_id=Os03g0216600;Note=Similar to Alpha-glucosidase like protein.;Transcript_evidence=AK121428 (DDBJ%2C Best hit);ORF_evidence=B5U8Z1 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 31 (IPR000322),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J023136H14;Expression=AK121428;TENOR=Os03t0216600-02;KEGG=Os03t0216600-02 (EC:3.2.1.84)
Chr03	irgsp1_rep	five_prime_UTR	6128597	6128597	.	+	.	Parent=Os03t0216600-02
Chr03	irgsp1_rep	CDS	6128598	6128726	.	+	0	Parent=Os03t0216600-02
Chr03	irgsp1_rep	CDS	6128841	6129114	.	+	0	Parent=Os03t0216600-02
Chr03	irgsp1_rep	CDS	6129192	6129327	.	+	2	Parent=Os03t0216600-02
Chr03	irgsp1_rep	CDS	6129558	6129768	.	+	1	Parent=Os03t0216600-02
Chr03	irgsp1_rep	CDS	6129850	6130056	.	+	0	Parent=Os03t0216600-02
Chr03	irgsp1_rep	CDS	6130488	6130856	.	+	0	Parent=Os03t0216600-02
Chr03	irgsp1_rep	three_prime_UTR	6130857	6131133	.	+	.	Parent=Os03t0216600-02
Chr03	irgsp1_rep	mRNA	6129674	6131074	.	+	.	ID=Os03t0216600-03;Name=Os03t0216600-03;Locus_id=Os03g0216600;Note=Similar to Alpha-glucosidase like protein.;Transcript_evidence=AK101307 (DDBJ%2C Best hit);ORF_evidence=B5U8Z1 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 31 (IPR000322);NIAS_FLcDNA=J033033M11;Expression=AK101307;TENOR=Os03t0216600-03;KEGG=Os03t0216600-03 (EC:3.2.1.84)
Chr03	irgsp1_rep	five_prime_UTR	6129674	6129675	.	+	.	Parent=Os03t0216600-03
Chr03	irgsp1_rep	CDS	6129676	6129768	.	+	0	Parent=Os03t0216600-03
Chr03	irgsp1_rep	CDS	6129850	6130056	.	+	0	Parent=Os03t0216600-03
Chr03	irgsp1_rep	CDS	6130488	6130856	.	+	0	Parent=Os03t0216600-03
Chr03	irgsp1_rep	three_prime_UTR	6130857	6131074	.	+	.	Parent=Os03t0216600-03
Chr03	irgsp1_rep	mRNA	6131846	6142781	.	-	.	ID=Os03t0216700-01;Name=Os03t0216700-01;Locus_id=Os03g0216700;RAP-DB Gene Symbol Synonym(s)=OsFRDL1;RAP-DB Gene Name Synonym(s)=FRD3-like protein 1;Oryzabase Gene Symbol Synonym(s)=OsFRDL1%2C FRDL1;Oryzabase Gene Name Synonym(s)=FRD3-like protein 1;Note=Citrate transporter%2C Efficient translocation of Fe;Transcript_evidence=AK101556;ORF_evidence=Q10PY7;GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297),Cellular Component: membrane (GO:0016020);InterPro=Multi antimicrobial extrusion protein (IPR002528);NIAS_FLcDNA=J033050B03;Manual Curation=May 18%2C 2016;Literature_PMID=19011004;Oryzabase=11139;Expression=AK101556;TENOR=Os03t0216700-01;KEGG=Os03t0216700-01
Chr03	irgsp1_rep	five_prime_UTR	6142636	6142781	.	-	.	Parent=Os03t0216700-01
Chr03	irgsp1_rep	five_prime_UTR	6140387	6140448	.	-	.	Parent=Os03t0216700-01
Chr03	irgsp1_rep	five_prime_UTR	6136376	6136539	.	-	.	Parent=Os03t0216700-01
Chr03	irgsp1_rep	CDS	6136131	6136375	.	-	0	Parent=Os03t0216700-01
Chr03	irgsp1_rep	CDS	6135907	6136028	.	-	1	Parent=Os03t0216700-01
Chr03	irgsp1_rep	CDS	6134603	6134809	.	-	2	Parent=Os03t0216700-01
Chr03	irgsp1_rep	CDS	6134046	6134239	.	-	2	Parent=Os03t0216700-01
Chr03	irgsp1_rep	CDS	6133804	6133939	.	-	0	Parent=Os03t0216700-01
Chr03	irgsp1_rep	CDS	6133589	6133685	.	-	2	Parent=Os03t0216700-01
Chr03	irgsp1_rep	CDS	6133384	6133484	.	-	1	Parent=Os03t0216700-01
Chr03	irgsp1_rep	CDS	6133133	6133296	.	-	2	Parent=Os03t0216700-01
Chr03	irgsp1_rep	CDS	6132937	6133008	.	-	0	Parent=Os03t0216700-01
Chr03	irgsp1_rep	CDS	6132717	6132833	.	-	0	Parent=Os03t0216700-01
Chr03	irgsp1_rep	CDS	6132526	6132621	.	-	0	Parent=Os03t0216700-01
Chr03	irgsp1_rep	CDS	6132300	6132421	.	-	0	Parent=Os03t0216700-01
Chr03	irgsp1_rep	CDS	6132127	6132169	.	-	1	Parent=Os03t0216700-01
Chr03	irgsp1_rep	three_prime_UTR	6131846	6132126	.	-	.	Parent=Os03t0216700-01
Chr03	irgsp1_rep	mRNA	6131843	6136255	.	+	.	ID=Os03t0216733-00;Name=Os03t0216733-00;Locus_id=Os03g0216733;Note=Hypothetical protein.;Transcript_evidence=tplb0059f16 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0216733-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	6131843	6132168	.	+	.	Parent=Os03t0216733-00
Chr03	irgsp1_rep	five_prime_UTR	6132299	6132419	.	+	.	Parent=Os03t0216733-00
Chr03	irgsp1_rep	five_prime_UTR	6132524	6132622	.	+	.	Parent=Os03t0216733-00
Chr03	irgsp1_rep	five_prime_UTR	6132718	6132732	.	+	.	Parent=Os03t0216733-00
Chr03	irgsp1_rep	CDS	6132733	6132840	.	+	0	Parent=Os03t0216733-00
Chr03	irgsp1_rep	CDS	6132943	6133007	.	+	0	Parent=Os03t0216733-00
Chr03	irgsp1_rep	CDS	6133132	6133237	.	+	1	Parent=Os03t0216733-00
Chr03	irgsp1_rep	three_prime_UTR	6133238	6133294	.	+	.	Parent=Os03t0216733-00
Chr03	irgsp1_rep	three_prime_UTR	6133382	6133481	.	+	.	Parent=Os03t0216733-00
Chr03	irgsp1_rep	three_prime_UTR	6133586	6133685	.	+	.	Parent=Os03t0216733-00
Chr03	irgsp1_rep	three_prime_UTR	6133804	6133932	.	+	.	Parent=Os03t0216733-00
Chr03	irgsp1_rep	three_prime_UTR	6134039	6134250	.	+	.	Parent=Os03t0216733-00
Chr03	irgsp1_rep	three_prime_UTR	6134612	6134811	.	+	.	Parent=Os03t0216733-00
Chr03	irgsp1_rep	three_prime_UTR	6135910	6136009	.	+	.	Parent=Os03t0216733-00
Chr03	irgsp1_rep	three_prime_UTR	6136115	6136255	.	+	.	Parent=Os03t0216733-00
Chr03	irgsp1_rep	mRNA	6147473	6152948	.	-	.	ID=Os03t0216766-01;Name=Os03t0216766-01;Locus_id=Os03g0216766;Note=Hypothetical gene.;Transcript_evidence=AK288737 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090063M20;TENOR=Os03t0216766-01;KEGG=Os03t0216766-01
Chr03	irgsp1_rep	five_prime_UTR	6152617	6152948	.	-	.	Parent=Os03t0216766-01
Chr03	irgsp1_rep	CDS	6152317	6152616	.	-	0	Parent=Os03t0216766-01
Chr03	irgsp1_rep	three_prime_UTR	6147473	6152316	.	-	.	Parent=Os03t0216766-01
Chr03	irgsp1_rep	mRNA	6152114	6155182	.	+	.	ID=Os03t0216800-01;Name=Os03t0216800-01;Locus_id=Os03g0216800;Oryzabase Gene Symbol Synonym(s)=OsPGL18%2C PGL18;Oryzabase Gene Name Synonym(s)=Polygalacturonases-Like 18%2C PG-like 18;Note=Similar to Polygalacturonase B (Fragment).;Transcript_evidence=AK105520 (DDBJ%2C Best hit);ORF_evidence=NP_001150245.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=001-127-F09;Oryzabase=22295;Expression=AK105520;TENOR=Os03t0216800-01;KEGG=Os03t0216800-01
Chr03	irgsp1_rep	five_prime_UTR	6152114	6152172	.	+	.	Parent=Os03t0216800-01
Chr03	irgsp1_rep	CDS	6152173	6152418	.	+	0	Parent=Os03t0216800-01
Chr03	irgsp1_rep	CDS	6152538	6152675	.	+	0	Parent=Os03t0216800-01
Chr03	irgsp1_rep	CDS	6152757	6152927	.	+	0	Parent=Os03t0216800-01
Chr03	irgsp1_rep	CDS	6153033	6153053	.	+	0	Parent=Os03t0216800-01
Chr03	irgsp1_rep	CDS	6153127	6153334	.	+	0	Parent=Os03t0216800-01
Chr03	irgsp1_rep	CDS	6153444	6153525	.	+	2	Parent=Os03t0216800-01
Chr03	irgsp1_rep	CDS	6153745	6153853	.	+	1	Parent=Os03t0216800-01
Chr03	irgsp1_rep	CDS	6154681	6154797	.	+	0	Parent=Os03t0216800-01
Chr03	irgsp1_rep	CDS	6154884	6155108	.	+	0	Parent=Os03t0216800-01
Chr03	irgsp1_rep	three_prime_UTR	6155109	6155182	.	+	.	Parent=Os03t0216800-01
Chr03	irgsp1_rep	mRNA	6159948	6163869	.	+	.	ID=Os03t0216900-01;Name=Os03t0216900-01;Locus_id=Os03g0216900;Note=Prefoldin domain containing protein.;Transcript_evidence=AK073615 (DDBJ%2C Best hit);ORF_evidence=B8AQU4 (UniProt);NIAS_FLcDNA=J033050E12;Expression=AK073615;TENOR=Os03t0216900-01;KEGG=Os03t0216900-01
Chr03	irgsp1_rep	five_prime_UTR	6159948	6159949	.	+	.	Parent=Os03t0216900-01
Chr03	irgsp1_rep	CDS	6159950	6160087	.	+	0	Parent=Os03t0216900-01
Chr03	irgsp1_rep	CDS	6160207	6160503	.	+	0	Parent=Os03t0216900-01
Chr03	irgsp1_rep	CDS	6162269	6162496	.	+	0	Parent=Os03t0216900-01
Chr03	irgsp1_rep	CDS	6163195	6163542	.	+	0	Parent=Os03t0216900-01
Chr03	irgsp1_rep	three_prime_UTR	6163543	6163869	.	+	.	Parent=Os03t0216900-01
Chr03	irgsp1_rep	mRNA	6163963	6164560	.	-	.	ID=Os03t0217000-01;Name=Os03t0217000-01;Locus_id=Os03g0217000;Note=Similar to Inhibin beta B chain precursor (Activin beta-B chain).;Transcript_evidence=AK120090 (DDBJ%2C Best hit);ORF_evidence=A2XDZ6 (UniProt);NIAS_FLcDNA=J013021A09;Expression=AK120090;TENOR=Os03t0217000-01;KEGG=Os03t0217000-01
Chr03	irgsp1_rep	five_prime_UTR	6164497	6164560	.	-	.	Parent=Os03t0217000-01
Chr03	irgsp1_rep	CDS	6164065	6164496	.	-	0	Parent=Os03t0217000-01
Chr03	irgsp1_rep	three_prime_UTR	6163963	6164064	.	-	.	Parent=Os03t0217000-01
Chr03	irgsp1_rep	mRNA	6167007	6173938	.	+	.	ID=Os03t0217200-01;Name=Os03t0217200-01;Locus_id=Os03g0217200;Oryzabase Gene Symbol Synonym(s)=OsFbox133%2C Os_F0449;Oryzabase Gene Name Synonym(s)=F-box protein 133;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK069930 (DDBJ%2C Best hit);ORF_evidence=Q10PY0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023035D04;Oryzabase=16924;Expression=AK069930;TENOR=Os03t0217200-01;KEGG=Os03t0217200-01
Chr03	irgsp1_rep	five_prime_UTR	6167007	6167195	.	+	.	Parent=Os03t0217200-01
Chr03	irgsp1_rep	CDS	6167196	6167265	.	+	0	Parent=Os03t0217200-01
Chr03	irgsp1_rep	CDS	6167932	6168035	.	+	2	Parent=Os03t0217200-01
Chr03	irgsp1_rep	CDS	6172275	6173114	.	+	0	Parent=Os03t0217200-01
Chr03	irgsp1_rep	CDS	6173188	6173340	.	+	0	Parent=Os03t0217200-01
Chr03	irgsp1_rep	CDS	6173428	6173796	.	+	0	Parent=Os03t0217200-01
Chr03	irgsp1_rep	three_prime_UTR	6173797	6173938	.	+	.	Parent=Os03t0217200-01
Chr03	irgsp1_rep	mRNA	6179834	6181773	.	-	.	ID=Os03t0217400-01;Name=Os03t0217400-01;Locus_id=Os03g0217400;Note=Conserved hypothetical protein.;Transcript_evidence=AK099649 (DDBJ%2C Best hit);ORF_evidence=B9F682 (UniProt);NIAS_FLcDNA=J013065B14;Expression=AK099649;TENOR=Os03t0217400-01;KEGG=Os03t0217400-01
Chr03	irgsp1_rep	five_prime_UTR	6180641	6181773	.	-	.	Parent=Os03t0217400-01
Chr03	irgsp1_rep	CDS	6180600	6180640	.	-	0	Parent=Os03t0217400-01
Chr03	irgsp1_rep	CDS	6180320	6180481	.	-	1	Parent=Os03t0217400-01
Chr03	irgsp1_rep	CDS	6180096	6180183	.	-	1	Parent=Os03t0217400-01
Chr03	irgsp1_rep	three_prime_UTR	6179834	6180095	.	-	.	Parent=Os03t0217400-01
Chr03	irgsp1_rep	mRNA	6197270	6201232	.	-	.	ID=Os03t0217801-01;Name=Os03t0217801-01;Locus_id=Os03g0217801;Note=Hypothetical gene.;Transcript_evidence=AK243550 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100079G22;TENOR=Os03t0217801-01;KEGG=Os03t0217801-01
Chr03	irgsp1_rep	five_prime_UTR	6201232	6201232	.	-	.	Parent=Os03t0217801-01
Chr03	irgsp1_rep	CDS	6200655	6201231	.	-	0	Parent=Os03t0217801-01
Chr03	irgsp1_rep	CDS	6200294	6200316	.	-	2	Parent=Os03t0217801-01
Chr03	irgsp1_rep	three_prime_UTR	6200244	6200293	.	-	.	Parent=Os03t0217801-01
Chr03	irgsp1_rep	three_prime_UTR	6197270	6197789	.	-	.	Parent=Os03t0217801-01
Chr03	irgsp1_rep	mRNA	6203132	6203995	.	+	.	ID=Os03t0217900-01;Name=Os03t0217900-01;Locus_id=Os03g0217900;Note=Hypothetical protein.;Transcript_evidence=AK119980 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-184-F06;Expression=AK119980;TENOR=Os03t0217900-01;KEGG=Os03t0217900-01
Chr03	irgsp1_rep	five_prime_UTR	6203132	6203166	.	+	.	Parent=Os03t0217900-01
Chr03	irgsp1_rep	CDS	6203167	6203652	.	+	0	Parent=Os03t0217900-01
Chr03	irgsp1_rep	three_prime_UTR	6203653	6203995	.	+	.	Parent=Os03t0217900-01
Chr03	irgsp1_rep	mRNA	6212658	6218550	.	+	.	ID=Os03t0218100-01;Name=Os03t0218100-01;Locus_id=Os03g0218100;Note=Sec63 domain domain containing protein.;Transcript_evidence=AK288903 (DDBJ%2C Best hit);ORF_evidence=Q10PX2 (UniProt);InterPro=Sec63 domain (IPR004179);NIAS_FLcDNA=J090080M15;TENOR=Os03t0218100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	6212658	6213016	.	+	.	Parent=Os03t0218100-01
Chr03	irgsp1_rep	CDS	6213017	6213238	.	+	0	Parent=Os03t0218100-01
Chr03	irgsp1_rep	three_prime_UTR	6213239	6218550	.	+	.	Parent=Os03t0218100-01
Chr03	irgsp1_rep	mRNA	6218055	6225071	.	-	.	ID=Os03t0218200-01;Name=Os03t0218200-01;Locus_id=Os03g0218200;Note=Similar to F-box domain containing protein%2C expressed.;Transcript_evidence=AK073971 (DDBJ%2C Best hit);ORF_evidence=Q10PX9 (UniProt);NIAS_FLcDNA=J033075D05;TENOR=Os03t0218200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	6224746	6225071	.	-	.	Parent=Os03t0218200-01
Chr03	irgsp1_rep	five_prime_UTR	6224098	6224158	.	-	.	Parent=Os03t0218200-01
Chr03	irgsp1_rep	CDS	6224055	6224097	.	-	0	Parent=Os03t0218200-01
Chr03	irgsp1_rep	CDS	6223396	6223484	.	-	2	Parent=Os03t0218200-01
Chr03	irgsp1_rep	CDS	6218686	6218838	.	-	0	Parent=Os03t0218200-01
Chr03	irgsp1_rep	CDS	6218227	6218595	.	-	0	Parent=Os03t0218200-01
Chr03	irgsp1_rep	three_prime_UTR	6218055	6218226	.	-	.	Parent=Os03t0218200-01
Chr03	irgsp1_rep	mRNA	6227695	6229743	.	+	.	ID=Os03t0218300-01;Name=Os03t0218300-01;Locus_id=Os03g0218300;Note=Conserved hypothetical protein.;Transcript_evidence=AK242996 (DDBJ%2C Best hit);ORF_evidence=Q10PX0 (UniProt);NIAS_FLcDNA=J090095I10;TENOR=Os03t0218300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	6227695	6227907	.	+	.	Parent=Os03t0218300-01
Chr03	irgsp1_rep	CDS	6227908	6229743	.	+	0	Parent=Os03t0218300-01
Chr03	irgsp1_rep	mRNA	6233563	6238297	.	-	.	ID=Os03t0218400-01;Name=Os03t0218400-01;Locus_id=Os03g0218400;CGSNL Gene Symbol=MST4;CGSNL Gene Name=MONOSACCHARIDE TRANSPORTER 4;Oryzabase Gene Symbol Synonym(s)=OsMST4;Oryzabase Gene Name Synonym(s)=monosaccharide transporter 4;Note=Similar to Hexose transporter.;Transcript_evidence=AK099306 (DDBJ%2C Best hit),AK069202 (DDBJ%2C Best hit);ORF_evidence=Q6VEF2 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J023140P21,J023009G17;Oryzabase=14691;Expression=AK099306;TENOR=Os03t0218400-01;KEGG=Os03t0218400-01
Chr03	irgsp1_rep	five_prime_UTR	6238203	6238297	.	-	.	Parent=Os03t0218400-01
Chr03	irgsp1_rep	CDS	6238073	6238202	.	-	0	Parent=Os03t0218400-01
Chr03	irgsp1_rep	CDS	6236976	6237297	.	-	2	Parent=Os03t0218400-01
Chr03	irgsp1_rep	CDS	6234976	6235098	.	-	1	Parent=Os03t0218400-01
Chr03	irgsp1_rep	CDS	6233899	6234871	.	-	1	Parent=Os03t0218400-01
Chr03	irgsp1_rep	three_prime_UTR	6233563	6233898	.	-	.	Parent=Os03t0218400-01
Chr03	irgsp1_rep	mRNA	6244085	6247317	.	-	.	ID=Os03t0218500-01;Name=Os03t0218500-01;Locus_id=Os03g0218500;Note=Similar to 70kD heat shock protein.;Transcript_evidence=AK102685 (DDBJ%2C Best hit);ORF_evidence=NP_001148098.1 (RefSeq);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Heat shock protein Hsp70 (IPR001023),Heat shock protein 70 (IPR013126),Heat shock protein 70%2C conserved site (IPR018181);NIAS_FLcDNA=J033102M24;Expression=AK102685;TENOR=Os03t0218500-01;KEGG=Os03t0218500-01
Chr03	irgsp1_rep	five_prime_UTR	6247075	6247317	.	-	.	Parent=Os03t0218500-01
Chr03	irgsp1_rep	five_prime_UTR	6246066	6246066	.	-	.	Parent=Os03t0218500-01
Chr03	irgsp1_rep	CDS	6244329	6246065	.	-	0	Parent=Os03t0218500-01
Chr03	irgsp1_rep	three_prime_UTR	6244085	6244328	.	-	.	Parent=Os03t0218500-01
Chr03	irgsp1_rep	mRNA	6264770	6267856	.	+	.	ID=Os03t0219100-01;Name=Os03t0219100-01;Locus_id=Os03g0219100;Note=Cellular retinaldehyde-binding/triple function%2C C-terminal domain containing protein.;Transcript_evidence=AK107170 (DDBJ%2C Best hit);ORF_evidence=B6UD95 (UniProt);InterPro=Cellular retinaldehyde-binding/triple function%2C C-terminal (IPR001251),Phosphatidylinositol transfer protein-like%2C N-terminal (IPR011074);NIAS_FLcDNA=002-124-G02;Expression=AK107170;TENOR=Os03t0219100-01;KEGG=Os03t0219100-01
Chr03	irgsp1_rep	five_prime_UTR	6264770	6264928	.	+	.	Parent=Os03t0219100-01
Chr03	irgsp1_rep	CDS	6264929	6265021	.	+	0	Parent=Os03t0219100-01
Chr03	irgsp1_rep	CDS	6265140	6265257	.	+	0	Parent=Os03t0219100-01
Chr03	irgsp1_rep	CDS	6265704	6265792	.	+	2	Parent=Os03t0219100-01
Chr03	irgsp1_rep	CDS	6265888	6265934	.	+	0	Parent=Os03t0219100-01
Chr03	irgsp1_rep	CDS	6266026	6266114	.	+	1	Parent=Os03t0219100-01
Chr03	irgsp1_rep	CDS	6266673	6266806	.	+	2	Parent=Os03t0219100-01
Chr03	irgsp1_rep	CDS	6266893	6267639	.	+	0	Parent=Os03t0219100-01
Chr03	irgsp1_rep	three_prime_UTR	6267640	6267856	.	+	.	Parent=Os03t0219100-01
Chr03	irgsp1_rep	mRNA	6271959	6275334	.	-	.	ID=Os03t0219200-01;Name=Os03t0219200-01;Locus_id=Os03g0219200;CGSNL Gene Symbol=SOD2;CGSNL Gene Name=SUPEROXIDE DISMUTASE 2;Oryzabase Gene Symbol Synonym(s)=OsSOD2%2C OsSOD2-Cu/Zn%2C SOD2-Cu/Zn;Oryzabase Gene Name Synonym(s)=superoxide dismutase 2;Note=Similar to Superoxide dismutase (EC 1.15.1.1).;Transcript_evidence=AK073785 (DDBJ%2C Best hit);ORF_evidence=Q10PW4 (UniProt);GO=Biological Process: superoxide metabolic process (GO:0006801),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: superoxide dismutase activity (GO:0004784),Molecular Function: metal ion binding (GO:0046872);InterPro=Superoxide dismutase%2C copper/zinc binding domain (IPR001424),Superoxide dismutase%2C copper/zinc%2C binding site (IPR018152),Superoxide dismutase (Cu/Zn) / chaperones (IPR024134);NIAS_FLcDNA=J033068D19;Oryzabase=11521;Expression=AK073785;TENOR=Os03t0219200-01;KEGG=Os03t0219200-01 (EC:1.15.1.1)
Chr03	irgsp1_rep	five_prime_UTR	6275334	6275334	.	-	.	Parent=Os03t0219200-01
Chr03	irgsp1_rep	CDS	6275234	6275333	.	-	0	Parent=Os03t0219200-01
Chr03	irgsp1_rep	CDS	6275004	6275105	.	-	2	Parent=Os03t0219200-01
Chr03	irgsp1_rep	CDS	6273927	6274022	.	-	2	Parent=Os03t0219200-01
Chr03	irgsp1_rep	CDS	6273782	6273813	.	-	2	Parent=Os03t0219200-01
Chr03	irgsp1_rep	CDS	6273614	6273689	.	-	0	Parent=Os03t0219200-01
Chr03	irgsp1_rep	CDS	6272477	6272530	.	-	2	Parent=Os03t0219200-01
Chr03	irgsp1_rep	CDS	6272267	6272295	.	-	2	Parent=Os03t0219200-01
Chr03	irgsp1_rep	three_prime_UTR	6271959	6272266	.	-	.	Parent=Os03t0219200-01
Chr03	irgsp1_rep	mRNA	6275829	6279463	.	-	.	ID=Os03t0219300-01;Name=Os03t0219300-01;Locus_id=Os03g0219300;Note=Similar to Tubulin alpha-2 chain (Alpha-2 tubulin).;Transcript_evidence=AK071837 (DDBJ%2C Best hit);ORF_evidence=O22348 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: microtubule-based process (GO:0007017),Biological Process: microtubule-based movement (GO:0007018),Biological Process: protein polymerization (GO:0051258),Cellular Component: microtubule (GO:0005874),Cellular Component: protein complex (GO:0043234),Molecular Function: GTPase activity (GO:0003924),Molecular Function: structural molecule activity (GO:0005198),Molecular Function: GTP binding (GO:0005525);InterPro=Tubulin (IPR000217),Alpha tubulin (IPR002452),Tubulin/FtsZ%2C GTPase domain (IPR003008),Tubulin/FtsZ%2C C-terminal (IPR008280),Beta tubulin%2C autoregulation binding site (IPR013838),Tubulin%2C conserved site (IPR017975),Tubulin/FtsZ%2C 2-layer sandwich domain (IPR018316),Tubulin%2C C-terminal (IPR023123);NIAS_FLcDNA=J023117K20;Expression=AK071837;TENOR=Os03t0219300-01;KEGG=Os03t0219300-01
Chr03	irgsp1_rep	five_prime_UTR	6279395	6279463	.	-	.	Parent=Os03t0219300-01
Chr03	irgsp1_rep	CDS	6279282	6279394	.	-	0	Parent=Os03t0219300-01
Chr03	irgsp1_rep	CDS	6278631	6278845	.	-	1	Parent=Os03t0219300-01
Chr03	irgsp1_rep	CDS	6277988	6278187	.	-	2	Parent=Os03t0219300-01
Chr03	irgsp1_rep	CDS	6276398	6276906	.	-	0	Parent=Os03t0219300-01
Chr03	irgsp1_rep	CDS	6275993	6276305	.	-	1	Parent=Os03t0219300-01
Chr03	irgsp1_rep	three_prime_UTR	6275829	6275992	.	-	.	Parent=Os03t0219300-01
Chr03	irgsp1_rep	mRNA	6276002	6276306	.	+	.	ID=Os03t0219350-00;Name=Os03t0219350-00;Locus_id=Os03g0219350;Note=Hypothetical gene.;Transcript_evidence=BT016903 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0219350-00
Chr03	irgsp1_rep	CDS	6276002	6276306	.	+	0	Parent=Os03t0219350-00
Chr03	irgsp1_rep	mRNA	6280458	6282712	.	-	.	ID=Os03t0219400-01;Name=Os03t0219400-01;Locus_id=Os03g0219400;Note=Glycoside hydrolase%2C family 20 protein.;Transcript_evidence=AK121985 (DDBJ%2C Best hit),AK100702 (DDBJ%2C Best hit);ORF_evidence=B4FYZ2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: beta-N-acetylhexosaminidase activity (GO:0004563),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 20 (IPR001540),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Acetylhexosaminidase%2C subunit a/b (IPR015882),Glycoside hydrolase%2C family 20%2C catalytic core (IPR015883),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J033108O18,J023114O06;Expression=AK121985;TENOR=Os03t0219400-01;KEGG=Os03t0219400-01 (EC:3.2.1.52)
Chr03	irgsp1_rep	five_prime_UTR	6282655	6282712	.	-	.	Parent=Os03t0219400-01
Chr03	irgsp1_rep	CDS	6281802	6282654	.	-	0	Parent=Os03t0219400-01
Chr03	irgsp1_rep	CDS	6280732	6281696	.	-	2	Parent=Os03t0219400-01
Chr03	irgsp1_rep	three_prime_UTR	6280458	6280731	.	-	.	Parent=Os03t0219400-01
Chr03	irgsp1_rep	mRNA	6280968	6282513	.	+	.	ID=Os03t0219450-00;Name=Os03t0219450-00;Locus_id=Os03g0219450;Note=Hypothetical protein.;Transcript_evidence=AK376451 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0219450-00
Chr03	irgsp1_rep	five_prime_UTR	6280968	6281395	.	+	.	Parent=Os03t0219450-00
Chr03	irgsp1_rep	CDS	6281396	6281884	.	+	0	Parent=Os03t0219450-00
Chr03	irgsp1_rep	three_prime_UTR	6281885	6282513	.	+	.	Parent=Os03t0219450-00
Chr03	irgsp1_rep	mRNA	6282872	6284348	.	+	.	ID=Os03t0219500-01;Name=Os03t0219500-01;Locus_id=Os03g0219500;CGSNL Gene Symbol=ISC4;CGSNL Gene Name=IRON-SULFUR CLUSTER PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OsISC4;Oryzabase Gene Name Synonym(s)=Iron-sulfur cluster protein 4;Note=Similar to Uv-induced protein uvi31.;Transcript_evidence=AK059646 (DDBJ%2C Best hit);ORF_evidence=A6N0A8 (UniProt);InterPro=BolA protein (IPR002634);NIAS_FLcDNA=001-031-C02;Oryzabase=13419;TENOR=Os03t0219500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	6282872	6282952	.	+	.	Parent=Os03t0219500-01
Chr03	irgsp1_rep	five_prime_UTR	6283730	6283758	.	+	.	Parent=Os03t0219500-01
Chr03	irgsp1_rep	CDS	6283759	6284067	.	+	0	Parent=Os03t0219500-01
Chr03	irgsp1_rep	three_prime_UTR	6284068	6284348	.	+	.	Parent=Os03t0219500-01
Chr03	irgsp1_rep	mRNA	6286013	6288421	.	-	.	ID=Os03t0219700-01;Name=Os03t0219700-01;Locus_id=Os03g0219700;Oryzabase Gene Symbol Synonym(s)=OsRH47B;Oryzabase Gene Name Synonym(s)=RNA helicase 47B;Note=DEAD-like helicase%2C N-terminal domain containing protein.;Transcript_evidence=AK071610 (DDBJ%2C Best hit);ORF_evidence=B7EQR1 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=J023104M07;Oryzabase=19154;Expression=AK071610;TENOR=Os03t0219700-01;KEGG=Os03t0219700-01
Chr03	irgsp1_rep	five_prime_UTR	6288288	6288421	.	-	.	Parent=Os03t0219700-01
Chr03	irgsp1_rep	five_prime_UTR	6287887	6287976	.	-	.	Parent=Os03t0219700-01
Chr03	irgsp1_rep	CDS	6286165	6287886	.	-	0	Parent=Os03t0219700-01
Chr03	irgsp1_rep	three_prime_UTR	6286013	6286164	.	-	.	Parent=Os03t0219700-01
Chr03	irgsp1_rep	mRNA	6290732	6294638	.	+	.	ID=Os03t0219800-01;Name=Os03t0219800-01;Locus_id=Os03g0219800;Note=Conserved hypothetical protein.;Transcript_evidence=AK066608 (DDBJ%2C Best hit);ORF_evidence=Q10PV8 (UniProt);NIAS_FLcDNA=J013074L04;TENOR=Os03t0219800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	6290732	6292832	.	+	.	Parent=Os03t0219800-01
Chr03	irgsp1_rep	five_prime_UTR	6292918	6293958	.	+	.	Parent=Os03t0219800-01
Chr03	irgsp1_rep	CDS	6293959	6294043	.	+	0	Parent=Os03t0219800-01
Chr03	irgsp1_rep	CDS	6294225	6294638	.	+	2	Parent=Os03t0219800-01
Chr03	irgsp1_rep	mRNA	6290732	6295218	.	+	.	ID=Os03t0219800-02;Name=Os03t0219800-02;Locus_id=Os03g0219800;Note=Conserved hypothetical protein.;Transcript_evidence=AK100742 (DDBJ%2C Best hit);ORF_evidence=Q10PV8 (UniProt);NIAS_FLcDNA=J023118E24;TENOR=Os03t0219800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	6290732	6292832	.	+	.	Parent=Os03t0219800-02
Chr03	irgsp1_rep	five_prime_UTR	6292918	6294199	.	+	.	Parent=Os03t0219800-02
Chr03	irgsp1_rep	CDS	6294200	6294946	.	+	0	Parent=Os03t0219800-02
Chr03	irgsp1_rep	three_prime_UTR	6294947	6295218	.	+	.	Parent=Os03t0219800-02
Chr03	irgsp1_rep	mRNA	6291435	6295238	.	+	.	ID=Os03t0219800-03;Name=Os03t0219800-03;Locus_id=Os03g0219800;Note=Conserved hypothetical protein.;Transcript_evidence=AK067307 (DDBJ%2C Best hit);ORF_evidence=Q10PV8 (UniProt);NIAS_FLcDNA=J013104A16;TENOR=Os03t0219800-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	6291435	6292832	.	+	.	Parent=Os03t0219800-03
Chr03	irgsp1_rep	five_prime_UTR	6292918	6293958	.	+	.	Parent=Os03t0219800-03
Chr03	irgsp1_rep	CDS	6293959	6294043	.	+	0	Parent=Os03t0219800-03
Chr03	irgsp1_rep	CDS	6294213	6294946	.	+	2	Parent=Os03t0219800-03
Chr03	irgsp1_rep	three_prime_UTR	6294947	6295238	.	+	.	Parent=Os03t0219800-03
Chr03	irgsp1_rep	mRNA	6295480	6297596	.	+	.	ID=Os03t0219900-01;Name=Os03t0219900-01;Locus_id=Os03g0219900;Note=Similar to 50S ribosomal protein L15%2C chloroplast precursor (CL15) (Fragment).;Transcript_evidence=AK066527 (DDBJ%2C Best hit);ORF_evidence=P31165 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: large ribosomal subunit (GO:0015934),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L15%2C conserved site (IPR001196),Ribosomal protein L15%2C bacterial-type (IPR005749),Ribosomal protein L18e/L15P (IPR021131);NIAS_FLcDNA=J013071N20;Expression=AK066527;TENOR=Os03t0219900-01;KEGG=Os03t0219900-01
Chr03	irgsp1_rep	five_prime_UTR	6295480	6295537	.	+	.	Parent=Os03t0219900-01
Chr03	irgsp1_rep	CDS	6295538	6295955	.	+	0	Parent=Os03t0219900-01
Chr03	irgsp1_rep	CDS	6296122	6296273	.	+	2	Parent=Os03t0219900-01
Chr03	irgsp1_rep	CDS	6297260	6297481	.	+	0	Parent=Os03t0219900-01
Chr03	irgsp1_rep	three_prime_UTR	6297482	6297596	.	+	.	Parent=Os03t0219900-01
Chr03	irgsp1_rep	mRNA	6302865	6304849	.	-	.	ID=Os03t0220100-01;Name=Os03t0220100-01;Locus_id=Os03g0220100;RAP-DB Gene Symbol Synonym(s)=WSL4%2C CER6/CUT1%2C CER6%2C CUT1%2C OsCER6;RAP-DB Gene Name Synonym(s)=wax crystal-sparse leaf 4%2C eceriferum6%2C eceriferum 6%2C cuticular 1;Oryzabase Gene Symbol Synonym(s)=CER6/CUT1%2C CER6%2C CUT1%2C OsCER6%2C WSL4%2C KCS6%2C OsKCS6%2C CER6/CUT1/KCS6;Oryzabase Gene Name Synonym(s)=eceriferum6%2C eceriferum 6%2C cuticular 1%2C wax crystal-sparse leaf 4%2C beta-ketoacyl-coenzyme A synthase 6%2C beta-ketoacyl-CoA synthase 6;Note=beta-ketoacyl-CoA synthase%2C Homolog of Arabidopsis CER6%2C Leaf cuticular wax synthesis%2C Very-long-chain fatty acid (VLCFA) elongation;Transcript_evidence=AK106150,AK066587,AK104714;ORF_evidence=Q10PV5;GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747),Cellular Component: membrane (GO:0016020);InterPro=Very-long-chain 3-ketoacyl-CoA synthase (IPR012392),Thiolase-like (IPR016039),FAE1/Type III polyketide synthase-like protein (IPR013601),3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III%2C C-terminal (IPR013747);NIAS_FLcDNA=001-207-H08, J013074H08, 001-037-H10;Manual Curation=February 7%2C 2017;Literature_PMID=27913740;Oryzabase=18131;Expression=AK106150;TENOR=Os03t0220100-01;KEGG=Os03t0220100-01;Subcellular location=endoplasmic reticulum (GO:0005783)
Chr03	irgsp1_rep	five_prime_UTR	6304675	6304849	.	-	.	Parent=Os03t0220100-01
Chr03	irgsp1_rep	CDS	6303964	6304674	.	-	0	Parent=Os03t0220100-01
Chr03	irgsp1_rep	CDS	6303097	6303870	.	-	0	Parent=Os03t0220100-01
Chr03	irgsp1_rep	three_prime_UTR	6302865	6303096	.	-	.	Parent=Os03t0220100-01
Chr03	irgsp1_rep	mRNA	6303103	6304706	.	+	.	ID=Os03t0220200-00;Name=Os03t0220200-00;Locus_id=Os03g0220200;Note=Hypothetical protein.;Transcript_evidence=tplb0055l20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0220200-00
Chr03	irgsp1_rep	five_prime_UTR	6303103	6303864	.	+	.	Parent=Os03t0220200-00
Chr03	irgsp1_rep	CDS	6303865	6303876	.	+	0	Parent=Os03t0220200-00
Chr03	irgsp1_rep	CDS	6303970	6304706	.	+	0	Parent=Os03t0220200-00
Chr03	irgsp1_rep	mRNA	6320342	6324013	.	-	.	ID=Os03t0220300-01;Name=Os03t0220300-01;Locus_id=Os03g0220300;Note=Hypothetical conserved gene.;Transcript_evidence=AK120487 (DDBJ%2C Best hit);ORF_evidence=Q10PV3 (UniProt);NIAS_FLcDNA=J013114B13;TENOR=Os03t0220300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	6323554	6324013	.	-	.	Parent=Os03t0220300-01
Chr03	irgsp1_rep	CDS	6323500	6323553	.	-	0	Parent=Os03t0220300-01
Chr03	irgsp1_rep	CDS	6323097	6323393	.	-	0	Parent=Os03t0220300-01
Chr03	irgsp1_rep	three_prime_UTR	6322242	6323096	.	-	.	Parent=Os03t0220300-01
Chr03	irgsp1_rep	three_prime_UTR	6320342	6320695	.	-	.	Parent=Os03t0220300-01
Chr03	irgsp1_rep	mRNA	6323070	6323980	.	-	.	ID=Os03t0220300-02;Name=Os03t0220300-02;Locus_id=Os03g0220300;Note=Hypothetical conserved gene.;Transcript_evidence=AK064657 (DDBJ%2C Best hit);ORF_evidence=Q10PV3 (UniProt);NIAS_FLcDNA=002-114-G04;Expression=AK064657;TENOR=Os03t0220300-02;KEGG=Os03t0220300-02
Chr03	irgsp1_rep	five_prime_UTR	6323554	6323980	.	-	.	Parent=Os03t0220300-02
Chr03	irgsp1_rep	CDS	6323500	6323553	.	-	0	Parent=Os03t0220300-02
Chr03	irgsp1_rep	CDS	6323097	6323393	.	-	0	Parent=Os03t0220300-02
Chr03	irgsp1_rep	three_prime_UTR	6323070	6323096	.	-	.	Parent=Os03t0220300-02
Chr03	irgsp1_rep	mRNA	6322191	6323852	.	-	.	ID=Os03t0220300-03;Name=Os03t0220300-03;Locus_id=Os03g0220300;Note=Conserved hypothetical protein.;Transcript_evidence=AK070005 (DDBJ%2C Best hit);ORF_evidence=Q10PV3 (UniProt);NIAS_FLcDNA=J023034L22;TENOR=Os03t0220300-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	6323409	6323852	.	-	.	Parent=Os03t0220300-03
Chr03	irgsp1_rep	CDS	6323097	6323408	.	-	0	Parent=Os03t0220300-03
Chr03	irgsp1_rep	three_prime_UTR	6322191	6323096	.	-	.	Parent=Os03t0220300-03
Chr03	irgsp1_rep	mRNA	6321983	6323189	.	-	.	ID=Os03t0220300-04;Name=Os03t0220300-04;Locus_id=Os03g0220300;Note=Conserved hypothetical protein.;Transcript_evidence=AK061070 (DDBJ%2C Best hit);ORF_evidence=Q5JJR5 (UniProt);NIAS_FLcDNA=006-206-C04;Expression=AK061070;TENOR=Os03t0220300-04;KEGG=Os03t0220300-04
Chr03	irgsp1_rep	five_prime_UTR	6322732	6323189	.	-	.	Parent=Os03t0220300-04
Chr03	irgsp1_rep	CDS	6322435	6322731	.	-	0	Parent=Os03t0220300-04
Chr03	irgsp1_rep	three_prime_UTR	6321983	6322434	.	-	.	Parent=Os03t0220300-04
Chr03	irgsp1_rep	mRNA	6327307	6328473	.	+	.	ID=Os03t0220700-01;Name=Os03t0220700-01;Locus_id=Os03g0220700;Note=Similar to (RAP Annotation release2) Peptidase.;Transcript_evidence=AK064093 (DDBJ%2C Best hit);ORF_evidence=Q10PV1 (UniProt);NIAS_FLcDNA=002-100-E09;TENOR=Os03t0220700-01
Chr03	irgsp1_rep	five_prime_UTR	6327307	6327744	.	+	.	Parent=Os03t0220700-01
Chr03	irgsp1_rep	CDS	6327745	6327785	.	+	0	Parent=Os03t0220700-01
Chr03	irgsp1_rep	CDS	6328345	6328473	.	+	1	Parent=Os03t0220700-01
Chr03	irgsp1_rep	mRNA	6327307	6334713	.	+	.	ID=Os03t0220700-02;Name=Os03t0220700-02;Locus_id=Os03g0220700;Note=Conserved hypothetical protein.;Transcript_evidence=AK069004 (DDBJ%2C Best hit);ORF_evidence=B9F694 (UniProt);NIAS_FLcDNA=J023003G04;TENOR=Os03t0220700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	6327307	6327744	.	+	.	Parent=Os03t0220700-02
Chr03	irgsp1_rep	CDS	6327745	6327785	.	+	0	Parent=Os03t0220700-02
Chr03	irgsp1_rep	CDS	6328345	6328573	.	+	1	Parent=Os03t0220700-02
Chr03	irgsp1_rep	CDS	6328876	6328920	.	+	0	Parent=Os03t0220700-02
Chr03	irgsp1_rep	CDS	6329037	6329174	.	+	0	Parent=Os03t0220700-02
Chr03	irgsp1_rep	three_prime_UTR	6329175	6329178	.	+	.	Parent=Os03t0220700-02
Chr03	irgsp1_rep	three_prime_UTR	6334006	6334281	.	+	.	Parent=Os03t0220700-02
Chr03	irgsp1_rep	three_prime_UTR	6334385	6334713	.	+	.	Parent=Os03t0220700-02
Chr03	irgsp1_rep	mRNA	6344978	6351569	.	+	.	ID=Os03t0221100-00;Name=Os03t0221100-00;Locus_id=Os03g0221100;Note=Peptidase S1C%2C HrtA/DegP2/Q/S domain containing protein.;Transcript_evidence=AK360477 (DDBJ);ORF_evidence=Q10PU7 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: catalytic activity (GO:0003824),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S1C%2C HrtA/DegP2/Q/S (IPR001940),Peptidase cysteine/serine%2C trypsin-like (IPR009003);TENOR=Os03t0221100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	6344978	6345087	.	+	.	Parent=Os03t0221100-00
Chr03	irgsp1_rep	five_prime_UTR	6345360	6345386	.	+	.	Parent=Os03t0221100-00
Chr03	irgsp1_rep	CDS	6345387	6345597	.	+	0	Parent=Os03t0221100-00
Chr03	irgsp1_rep	CDS	6345720	6345874	.	+	2	Parent=Os03t0221100-00
Chr03	irgsp1_rep	CDS	6346102	6346377	.	+	0	Parent=Os03t0221100-00
Chr03	irgsp1_rep	CDS	6346463	6346587	.	+	0	Parent=Os03t0221100-00
Chr03	irgsp1_rep	CDS	6346740	6346857	.	+	1	Parent=Os03t0221100-00
Chr03	irgsp1_rep	CDS	6346949	6347017	.	+	0	Parent=Os03t0221100-00
Chr03	irgsp1_rep	three_prime_UTR	6347018	6347041	.	+	.	Parent=Os03t0221100-00
Chr03	irgsp1_rep	three_prime_UTR	6347169	6347246	.	+	.	Parent=Os03t0221100-00
Chr03	irgsp1_rep	three_prime_UTR	6351478	6351569	.	+	.	Parent=Os03t0221100-00
Chr03	irgsp1_rep	mRNA	6353265	6353484	.	+	.	ID=Os03t0221150-01;Name=Os03t0221150-01;Locus_id=Os03g0221150;Note=Non-protein coding transcript.;Transcript_evidence=AK242342 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080005A17;TENOR=Os03t0221150-01
Chr03	irgsp1_rep	exon	6353265	6353484	.	+	.	Parent=Os03t0221150-01
Chr03	irgsp1_rep	mRNA	6354859	6357792	.	+	.	ID=Os03t0221200-01;Name=Os03t0221200-01;Locus_id=Os03g0221200;CGSNL Gene Symbol=HMT3;CGSNL Gene Name=HOMOCYSTEINE METHYLTRANSFERASE 3;Oryzabase Gene Symbol Synonym(s)=OsaHMT3%2C OsHMT3;Oryzabase Gene Name Synonym(s)=homocysteine methyltransferase 3;Note=Similar to Homocysteine S-methyltransferase 1 (EC 2.1.1.10) (S- methylmethionine:homocysteine methyltransferase 1) (SMM:Hcy S- methyltransferase 1) (ZmHMT-1).;Transcript_evidence=AK068002 (DDBJ%2C Best hit);ORF_evidence=NP_001105011.1 (RefSeq);GO=Molecular Function: homocysteine S-methyltransferase activity (GO:0008898);InterPro=Homocysteine S-methyltransferase (IPR003726);NIAS_FLcDNA=J013128N24;Oryzabase=22912;Expression=AK068002;TENOR=Os03t0221200-01;KEGG=Os03t0221200-01 (EC:2.1.1.10)
Chr03	irgsp1_rep	five_prime_UTR	6354859	6355004	.	+	.	Parent=Os03t0221200-01
Chr03	irgsp1_rep	CDS	6355005	6355160	.	+	0	Parent=Os03t0221200-01
Chr03	irgsp1_rep	CDS	6356046	6356102	.	+	0	Parent=Os03t0221200-01
Chr03	irgsp1_rep	CDS	6356208	6356413	.	+	0	Parent=Os03t0221200-01
Chr03	irgsp1_rep	CDS	6356534	6356663	.	+	1	Parent=Os03t0221200-01
Chr03	irgsp1_rep	CDS	6356791	6356994	.	+	0	Parent=Os03t0221200-01
Chr03	irgsp1_rep	CDS	6357105	6357200	.	+	0	Parent=Os03t0221200-01
Chr03	irgsp1_rep	three_prime_UTR	6357201	6357792	.	+	.	Parent=Os03t0221200-01
Chr03	irgsp1_rep	mRNA	6358095	6364239	.	-	.	ID=Os03t0221300-01;Name=Os03t0221300-01;Locus_id=Os03g0221300;CGSNL Gene Symbol=NAC57;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 57;Oryzabase Gene Symbol Synonym(s)=ONAC057%2C ONAC57;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 057%2C NAC domain-containing protein 57;Note=Similar to No apical meristem protein%2C expressed.;Transcript_evidence=AK105283 (DDBJ%2C Best hit);ORF_evidence=Q8H824 (UniProt);NIAS_FLcDNA=001-116-E01;Oryzabase=15841;Expression=AK105283;TENOR=Os03t0221300-01;KEGG=Os03t0221300-01
Chr03	irgsp1_rep	five_prime_UTR	6364238	6364239	.	-	.	Parent=Os03t0221300-01
Chr03	irgsp1_rep	CDS	6364169	6364237	.	-	0	Parent=Os03t0221300-01
Chr03	irgsp1_rep	CDS	6363376	6363466	.	-	0	Parent=Os03t0221300-01
Chr03	irgsp1_rep	CDS	6363025	6363298	.	-	2	Parent=Os03t0221300-01
Chr03	irgsp1_rep	CDS	6362650	6362698	.	-	1	Parent=Os03t0221300-01
Chr03	irgsp1_rep	CDS	6362265	6362370	.	-	0	Parent=Os03t0221300-01
Chr03	irgsp1_rep	CDS	6361934	6362149	.	-	2	Parent=Os03t0221300-01
Chr03	irgsp1_rep	CDS	6361443	6361782	.	-	2	Parent=Os03t0221300-01
Chr03	irgsp1_rep	CDS	6361265	6361360	.	-	1	Parent=Os03t0221300-01
Chr03	irgsp1_rep	CDS	6361141	6361189	.	-	1	Parent=Os03t0221300-01
Chr03	irgsp1_rep	CDS	6360912	6361034	.	-	0	Parent=Os03t0221300-01
Chr03	irgsp1_rep	CDS	6359939	6360040	.	-	0	Parent=Os03t0221300-01
Chr03	irgsp1_rep	CDS	6359751	6359842	.	-	0	Parent=Os03t0221300-01
Chr03	irgsp1_rep	CDS	6359502	6359655	.	-	1	Parent=Os03t0221300-01
Chr03	irgsp1_rep	CDS	6358413	6358679	.	-	0	Parent=Os03t0221300-01
Chr03	irgsp1_rep	three_prime_UTR	6358095	6358412	.	-	.	Parent=Os03t0221300-01
Chr03	irgsp1_rep	mRNA	6369452	6373695	.	+	.	ID=Os03t0221500-01;Name=Os03t0221500-01;Locus_id=Os03g0221500;Note=Glycoside hydrolase%2C family 17 protein.;Transcript_evidence=AK103138 (DDBJ%2C Best hit);ORF_evidence=NP_001150141.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J033120F09;Expression=AK103138;TENOR=Os03t0221500-01;KEGG=Os03t0221500-01
Chr03	irgsp1_rep	five_prime_UTR	6369452	6369717	.	+	.	Parent=Os03t0221500-01
Chr03	irgsp1_rep	CDS	6369718	6369784	.	+	0	Parent=Os03t0221500-01
Chr03	irgsp1_rep	CDS	6371767	6373023	.	+	2	Parent=Os03t0221500-01
Chr03	irgsp1_rep	CDS	6373105	6373132	.	+	2	Parent=Os03t0221500-01
Chr03	irgsp1_rep	CDS	6373241	6373403	.	+	1	Parent=Os03t0221500-01
Chr03	irgsp1_rep	three_prime_UTR	6373404	6373695	.	+	.	Parent=Os03t0221500-01
Chr03	irgsp1_rep	mRNA	6369476	6373695	.	+	.	ID=Os03t0221500-02;Name=Os03t0221500-02;Locus_id=Os03g0221500;Note=Glycoside hydrolase%2C family 17 protein.;Transcript_evidence=AK119620 (DDBJ%2C Best hit);ORF_evidence=NP_001150141.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=002-117-H02;Expression=AK119620;TENOR=Os03t0221500-02;KEGG=Os03t0221500-02
Chr03	irgsp1_rep	five_prime_UTR	6369476	6369717	.	+	.	Parent=Os03t0221500-02
Chr03	irgsp1_rep	CDS	6369718	6369784	.	+	0	Parent=Os03t0221500-02
Chr03	irgsp1_rep	CDS	6371767	6373023	.	+	2	Parent=Os03t0221500-02
Chr03	irgsp1_rep	CDS	6373105	6373132	.	+	2	Parent=Os03t0221500-02
Chr03	irgsp1_rep	CDS	6373241	6373403	.	+	1	Parent=Os03t0221500-02
Chr03	irgsp1_rep	three_prime_UTR	6373404	6373695	.	+	.	Parent=Os03t0221500-02
Chr03	irgsp1_rep	mRNA	6369696	6373704	.	+	.	ID=Os03t0221500-03;Name=Os03t0221500-03;Locus_id=Os03g0221500;Note=Glycoside hydrolase%2C family 17 protein.;Transcript_evidence=AK109516 (DDBJ%2C Best hit);ORF_evidence=NP_001150141.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=002-108-H10;Expression=AK109516;TENOR=Os03t0221500-03;KEGG=Os03t0221500-03
Chr03	irgsp1_rep	five_prime_UTR	6369696	6369717	.	+	.	Parent=Os03t0221500-03
Chr03	irgsp1_rep	CDS	6369718	6369784	.	+	0	Parent=Os03t0221500-03
Chr03	irgsp1_rep	CDS	6371767	6373023	.	+	2	Parent=Os03t0221500-03
Chr03	irgsp1_rep	CDS	6373105	6373132	.	+	2	Parent=Os03t0221500-03
Chr03	irgsp1_rep	CDS	6373241	6373403	.	+	1	Parent=Os03t0221500-03
Chr03	irgsp1_rep	three_prime_UTR	6373404	6373704	.	+	.	Parent=Os03t0221500-03
Chr03	irgsp1_rep	mRNA	6377132	6379856	.	-	.	ID=Os03t0221600-01;Name=Os03t0221600-01;Locus_id=Os03g0221600;Note=Hypothetical protein.;Transcript_evidence=AK067131 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013095L11;Expression=AK067131;TENOR=Os03t0221600-01;KEGG=Os03t0221600-01
Chr03	irgsp1_rep	five_prime_UTR	6378976	6379856	.	-	.	Parent=Os03t0221600-01
Chr03	irgsp1_rep	CDS	6377533	6378975	.	-	0	Parent=Os03t0221600-01
Chr03	irgsp1_rep	three_prime_UTR	6377132	6377532	.	-	.	Parent=Os03t0221600-01
Chr03	irgsp1_rep	mRNA	6377414	6380243	.	+	.	ID=Os03t0221700-02;Name=Os03t0221700-02;Locus_id=Os03g0221700;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK060765 (DDBJ%2C Best hit),AK098866 (DDBJ%2C Best hit),AK098871 (DDBJ%2C Best hit);ORF_evidence=A2XE17 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Epidermal growth factor-like%2C type 3 (IPR000742),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-033-A08,J013001A09,J013001B07;Expression=AK060765;TENOR=Os03t0221700-02;KEGG=Os03t0221700-02
Chr03	irgsp1_rep	five_prime_UTR	6377414	6377457	.	+	.	Parent=Os03t0221700-02
Chr03	irgsp1_rep	CDS	6377458	6379989	.	+	0	Parent=Os03t0221700-02
Chr03	irgsp1_rep	three_prime_UTR	6379990	6380243	.	+	.	Parent=Os03t0221700-02
Chr03	irgsp1_rep	mRNA	6380281	6388758	.	-	.	ID=Os03t0221800-01;Name=Os03t0221800-01;Locus_id=Os03g0221800;Note=Similar to Leucine Rich Repeat family protein%2C expressed.;Transcript_evidence=AK243079 (DDBJ%2C Best hit);ORF_evidence=Q10PT8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=J100020A09;TENOR=Os03t0221800-01;KEGG=Os03t0221800-01
Chr03	irgsp1_rep	five_prime_UTR	6388522	6388758	.	-	.	Parent=Os03t0221800-01
Chr03	irgsp1_rep	CDS	6388060	6388521	.	-	0	Parent=Os03t0221800-01
Chr03	irgsp1_rep	CDS	6386515	6386772	.	-	0	Parent=Os03t0221800-01
Chr03	irgsp1_rep	CDS	6386170	6386412	.	-	0	Parent=Os03t0221800-01
Chr03	irgsp1_rep	CDS	6385897	6386046	.	-	0	Parent=Os03t0221800-01
Chr03	irgsp1_rep	CDS	6383690	6385137	.	-	0	Parent=Os03t0221800-01
Chr03	irgsp1_rep	CDS	6382563	6382636	.	-	1	Parent=Os03t0221800-01
Chr03	irgsp1_rep	CDS	6382315	6382396	.	-	2	Parent=Os03t0221800-01
Chr03	irgsp1_rep	CDS	6382114	6382239	.	-	1	Parent=Os03t0221800-01
Chr03	irgsp1_rep	CDS	6381875	6381981	.	-	1	Parent=Os03t0221800-01
Chr03	irgsp1_rep	CDS	6381330	6381484	.	-	2	Parent=Os03t0221800-01
Chr03	irgsp1_rep	CDS	6380486	6380731	.	-	0	Parent=Os03t0221800-01
Chr03	irgsp1_rep	three_prime_UTR	6380281	6380485	.	-	.	Parent=Os03t0221800-01
Chr03	irgsp1_rep	mRNA	6392811	6395478	.	-	.	ID=Os03t0222100-01;Name=Os03t0222100-01;Locus_id=Os03g0222100;Note=Similar to Topoisomerase-like protein.;Transcript_evidence=AK070688 (DDBJ%2C Best hit);ORF_evidence=Q8H818 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Initiation factor eIF-4 gamma%2C MA3 (IPR003891),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023057E15;Expression=AK070688;TENOR=Os03t0222100-01;KEGG=Os03t0222100-01
Chr03	irgsp1_rep	five_prime_UTR	6395186	6395478	.	-	.	Parent=Os03t0222100-01
Chr03	irgsp1_rep	CDS	6395105	6395185	.	-	0	Parent=Os03t0222100-01
Chr03	irgsp1_rep	CDS	6393188	6395023	.	-	0	Parent=Os03t0222100-01
Chr03	irgsp1_rep	three_prime_UTR	6392811	6393187	.	-	.	Parent=Os03t0222100-01
Chr03	irgsp1_rep	mRNA	6403950	6404477	.	-	.	ID=Os03t0222401-00;Name=Os03t0222401-00;Locus_id=Os03g0222401;Note=Non-protein coding transcript.;Transcript_evidence=EU946195 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0222401-00
Chr03	irgsp1_rep	exon	6403950	6404477	.	-	.	Parent=Os03t0222401-00
Chr03	irgsp1_rep	mRNA	6405347	6406081	.	+	.	ID=Os03t0222500-00;Name=Os03t0222500-00;Locus_id=Os03g0222500;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8H816 (UniProt);TENOR=Os03t0222500-00;KEGG=Os03t0222500-00
Chr03	irgsp1_rep	CDS	6405347	6406081	.	+	0	Parent=Os03t0222500-00
Chr03	irgsp1_rep	mRNA	6418114	6420549	.	+	.	ID=Os03t0222600-01;Name=Os03t0222600-01;Locus_id=Os03g0222600;Note=Similar to caleosin.;Transcript_evidence=AK243437 (DDBJ%2C Best hit);ORF_evidence=NP_001151906.1 (RefSeq);InterPro=Caleosin (IPR007736);NIAS_FLcDNA=J100068E06;TENOR=Os03t0222600-01;KEGG=Os03t0222600-01
Chr03	irgsp1_rep	five_prime_UTR	6418114	6418244	.	+	.	Parent=Os03t0222600-01
Chr03	irgsp1_rep	CDS	6418245	6418371	.	+	0	Parent=Os03t0222600-01
Chr03	irgsp1_rep	CDS	6418911	6419060	.	+	2	Parent=Os03t0222600-01
Chr03	irgsp1_rep	CDS	6419358	6419443	.	+	2	Parent=Os03t0222600-01
Chr03	irgsp1_rep	CDS	6419841	6419935	.	+	0	Parent=Os03t0222600-01
Chr03	irgsp1_rep	CDS	6420042	6420167	.	+	1	Parent=Os03t0222600-01
Chr03	irgsp1_rep	CDS	6420262	6420400	.	+	1	Parent=Os03t0222600-01
Chr03	irgsp1_rep	three_prime_UTR	6420401	6420549	.	+	.	Parent=Os03t0222600-01
Chr03	irgsp1_rep	mRNA	6421790	6422412	.	+	.	ID=Os03t0222700-01;Name=Os03t0222700-01;Locus_id=Os03g0222700;Oryzabase Gene Name Synonym(s)=rice DJA5 homolog;Note=Molecular chaperone%2C heat shock protein%2C Hsp40%2C DnaJ domain containing protein.;Transcript_evidence=AK109454 (DDBJ%2C Best hit);ORF_evidence=XP_002883090.1 (RefSeq);GO=Molecular Function: heat shock protein binding (GO:0031072);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623);NIAS_FLcDNA=001-118-F07;Oryzabase=19668;TENOR=Os03t0222700-01;KEGG=Os03t0222700-01
Chr03	irgsp1_rep	five_prime_UTR	6421790	6421848	.	+	.	Parent=Os03t0222700-01
Chr03	irgsp1_rep	CDS	6421849	6422175	.	+	0	Parent=Os03t0222700-01
Chr03	irgsp1_rep	three_prime_UTR	6422176	6422412	.	+	.	Parent=Os03t0222700-01
Chr03	irgsp1_rep	mRNA	6424393	6426901	.	+	.	ID=Os03t0222800-01;Name=Os03t0222800-01;Locus_id=Os03g0222800;Note=Conserved hypothetical protein.;Transcript_evidence=AK063432 (DDBJ%2C Best hit);ORF_evidence=Q10PS9 (UniProt);NIAS_FLcDNA=001-115-D11;TENOR=Os03t0222800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	6424393	6425070	.	+	.	Parent=Os03t0222800-01
Chr03	irgsp1_rep	five_prime_UTR	6425367	6425498	.	+	.	Parent=Os03t0222800-01
Chr03	irgsp1_rep	five_prime_UTR	6425573	6425951	.	+	.	Parent=Os03t0222800-01
Chr03	irgsp1_rep	CDS	6425952	6426042	.	+	0	Parent=Os03t0222800-01
Chr03	irgsp1_rep	CDS	6426115	6426208	.	+	2	Parent=Os03t0222800-01
Chr03	irgsp1_rep	CDS	6426375	6426594	.	+	1	Parent=Os03t0222800-01
Chr03	irgsp1_rep	three_prime_UTR	6426595	6426901	.	+	.	Parent=Os03t0222800-01
Chr03	irgsp1_rep	mRNA	6428279	6438500	.	+	.	ID=Os03t0223000-01;Name=Os03t0223000-01;Locus_id=Os03g0223000;CGSNL Gene Symbol=RLCK377;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 377;Oryzabase Gene Symbol Synonym(s)=OsRLCK377;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 377;Note=Similar to atypical receptor-like kinase MARK.;Transcript_evidence=AK070591 (DDBJ%2C Best hit);ORF_evidence=Q8H811 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023055M11;Oryzabase=16288;Expression=AK070591;TENOR=Os03t0223000-01;KEGG=Os03t0223000-01
Chr03	irgsp1_rep	five_prime_UTR	6428279	6428493	.	+	.	Parent=Os03t0223000-01
Chr03	irgsp1_rep	five_prime_UTR	6428578	6428627	.	+	.	Parent=Os03t0223000-01
Chr03	irgsp1_rep	five_prime_UTR	6428740	6428845	.	+	.	Parent=Os03t0223000-01
Chr03	irgsp1_rep	five_prime_UTR	6428954	6429012	.	+	.	Parent=Os03t0223000-01
Chr03	irgsp1_rep	five_prime_UTR	6430331	6430421	.	+	.	Parent=Os03t0223000-01
Chr03	irgsp1_rep	CDS	6430422	6430448	.	+	0	Parent=Os03t0223000-01
Chr03	irgsp1_rep	CDS	6430770	6430809	.	+	0	Parent=Os03t0223000-01
Chr03	irgsp1_rep	CDS	6437524	6438143	.	+	2	Parent=Os03t0223000-01
Chr03	irgsp1_rep	three_prime_UTR	6438144	6438500	.	+	.	Parent=Os03t0223000-01
Chr03	irgsp1_rep	mRNA	6434902	6438435	.	+	.	ID=Os03t0223000-02;Name=Os03t0223000-02;Locus_id=Os03g0223000;CGSNL Gene Symbol=RLCK377;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 377;Oryzabase Gene Symbol Synonym(s)=OsRLCK377;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 377;Note=Similar to Atypical receptor-like kinase MARK.;Transcript_evidence=AK065199 (DDBJ%2C Best hit);ORF_evidence=B6UCN1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013002E20;Oryzabase=16288;TENOR=Os03t0223000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	6434902	6435031	.	+	.	Parent=Os03t0223000-02
Chr03	irgsp1_rep	CDS	6435032	6436439	.	+	0	Parent=Os03t0223000-02
Chr03	irgsp1_rep	CDS	6437524	6438143	.	+	2	Parent=Os03t0223000-02
Chr03	irgsp1_rep	three_prime_UTR	6438144	6438435	.	+	.	Parent=Os03t0223000-02
Chr03	irgsp1_rep	mRNA	6437310	6438432	.	+	.	ID=Os03t0223000-03;Name=Os03t0223000-03;Locus_id=Os03g0223000;CGSNL Gene Symbol=RLCK377;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 377;Oryzabase Gene Symbol Synonym(s)=OsRLCK377;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 377;Note=Similar to atypical receptor-like kinase MARK.;Transcript_evidence=AK061811 (DDBJ%2C Best hit);ORF_evidence=Q8H811 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-040-A12;Oryzabase=16288;Expression=AK061811;TENOR=Os03t0223000-03;KEGG=Os03t0223000-03
Chr03	irgsp1_rep	five_prime_UTR	6437310	6437510	.	+	.	Parent=Os03t0223000-03
Chr03	irgsp1_rep	CDS	6437511	6438143	.	+	0	Parent=Os03t0223000-03
Chr03	irgsp1_rep	three_prime_UTR	6438144	6438432	.	+	.	Parent=Os03t0223000-03
Chr03	irgsp1_rep	mRNA	6443453	6445461	.	-	.	ID=Os03t0223100-02;Name=Os03t0223100-02;Locus_id=Os03g0223100;CGSNL Gene Symbol=CYP94D15;CGSNL Gene Name=CYTOCHROME P450 94D15;Oryzabase Gene Symbol Synonym(s)=OsCYP94D15;Oryzabase Gene Name Synonym(s)=CytoChrome P450 94D15;Note=CytoChrome P450 family protein.;Transcript_evidence=AK109504 (DDBJ%2C Best hit),AK062585 (DDBJ%2C Best hit),AK105985 (DDBJ%2C Best hit);ORF_evidence=Q8H810 (UniProt);NIAS_FLcDNA=001-208-D01,001-100-E07,001-205-G07;Oryzabase=23111;Expression=AK109504;TENOR=Os03t0223100-02;KEGG=Os03t0223100-02
Chr03	irgsp1_rep	five_prime_UTR	6445453	6445461	.	-	.	Parent=Os03t0223100-02
Chr03	irgsp1_rep	CDS	6443830	6445452	.	-	0	Parent=Os03t0223100-02
Chr03	irgsp1_rep	three_prime_UTR	6443453	6443829	.	-	.	Parent=Os03t0223100-02
Chr03	irgsp1_rep	mRNA	6453022	6455453	.	+	.	ID=Os03t0223200-00;Name=Os03t0223200-00;Locus_id=Os03g0223200;CGSNL Gene Symbol=CAD9;CGSNL Gene Name=CINNAMYL ALCOHOL DEHYDROGENASE 9;Oryzabase Gene Symbol Synonym(s)=OsCAD9;Oryzabase Gene Name Synonym(s)=Cinnamyl alcohol dehydrogenase 9;Note=Similar to Cinnamyl alcohol dehydrogenase.;Transcript_evidence=AJ231135 (DDBJ);ORF_evidence=C1M2W0 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),Alcohol dehydrogenase%2C zinc-type%2C conserved site (IPR002328),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040),Polyketide synthase%2C enoylreductase (IPR020843);Oryzabase=10440;TENOR=Os03t0223200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	6453022	6453164	.	+	0	Parent=Os03t0223200-00
Chr03	irgsp1_rep	CDS	6454146	6454259	.	+	1	Parent=Os03t0223200-00
Chr03	irgsp1_rep	CDS	6454354	6454885	.	+	1	Parent=Os03t0223200-00
Chr03	irgsp1_rep	CDS	6454958	6455111	.	+	0	Parent=Os03t0223200-00
Chr03	irgsp1_rep	CDS	6455248	6455453	.	+	2	Parent=Os03t0223200-00
Chr03	irgsp1_rep	mRNA	6456086	6457732	.	+	.	ID=Os03t0223301-01;Name=Os03t0223301-01;Locus_id=Os03g0223301;Note=Hypothetical gene.;Transcript_evidence=AK287612 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065059E09;TENOR=Os03t0223301-01;KEGG=Os03t0223301-01
Chr03	irgsp1_rep	five_prime_UTR	6456086	6456087	.	+	.	Parent=Os03t0223301-01
Chr03	irgsp1_rep	CDS	6456088	6456870	.	+	0	Parent=Os03t0223301-01
Chr03	irgsp1_rep	three_prime_UTR	6456871	6457732	.	+	.	Parent=Os03t0223301-01
Chr03	irgsp1_rep	mRNA	6457915	6462146	.	-	.	ID=Os03t0223400-01;Name=Os03t0223400-01;Locus_id=Os03g0223400;RAP-DB Gene Symbol Synonym(s)=GLN1%3B2%2C OsGLN1%3B2%2C GSr%2C RGS8%2C OsGS1%3B2%2C GS1%3B2%2C GS1;RAP-DB Gene Name Synonym(s)=GLUTAMINE SYNTHETASE 1%3B2%2C cytosolic glutamine synthethase 1%3B2%2C cytosolic glutamine synthase 2%2C glutamine synthetase 1%3B2%2C glutamine synthetase 1;CGSNL Gene Symbol=GLN1%3B2;CGSNL Gene Name=GLUTAMINE SYNTHETASE 1%3B2;Oryzabase Gene Symbol Synonym(s)=OsGLN1%3B2%2C GSr%2C RGS8%2C OsGS1%3B2%2C GS1%3B2%2C GS1%2C OsGS1-2%2C GS1-2%2C OsGS1.2%2C GS1.2;Oryzabase Gene Name Synonym(s)=cytosolic glutamine synthethase 1%3B2%2C cytosolic glutamine synthase 2%2C glutamine synthetase 1%3B2%2C glutamine synthetase 1;Note=Cytosolic glutamine synthetase%2C Ammonium assimilation;Transcript_evidence=AB180688 (Sasanishiki),X14244 (Kinmaze),AK243037;ORF_evidence=P14654;GO=Biological Process: glutamine biosynthetic process (GO:0006542),Biological Process: nitrogen compound metabolic process (GO:0006807),Molecular Function: catalytic activity (GO:0003824),Molecular Function: glutamate-ammonia ligase activity (GO:0004356);InterPro=Glutamine synthetase%2C beta-Grasp (IPR008147),Glutamine synthetase/guanido kinase%2C catalytic domain (IPR014746),Glutamine synthetase%2C catalytic domain (IPR008146),Glutamine synthetase%2C N-terminal conserved site (IPR027302),Glutamine synthetase%2C glycine-rich site (IPR027303);NIAS_FLcDNA=J100007H13;Manual Curation=November 26%2C 2014;Literature_PMID=2577497,15574840;Oryzabase=8995;TENOR=Os03t0223400-01;KEGG=Os03t0223400-01 (EC:6.3.1.2)
Chr03	irgsp1_rep	five_prime_UTR	6462072	6462146	.	-	.	Parent=Os03t0223400-01
Chr03	irgsp1_rep	CDS	6461998	6462071	.	-	0	Parent=Os03t0223400-01
Chr03	irgsp1_rep	CDS	6461672	6461711	.	-	1	Parent=Os03t0223400-01
Chr03	irgsp1_rep	CDS	6461461	6461564	.	-	0	Parent=Os03t0223400-01
Chr03	irgsp1_rep	CDS	6461301	6461349	.	-	1	Parent=Os03t0223400-01
Chr03	irgsp1_rep	CDS	6460267	6460373	.	-	0	Parent=Os03t0223400-01
Chr03	irgsp1_rep	CDS	6459793	6459881	.	-	1	Parent=Os03t0223400-01
Chr03	irgsp1_rep	CDS	6459207	6459334	.	-	2	Parent=Os03t0223400-01
Chr03	irgsp1_rep	CDS	6458996	6459070	.	-	0	Parent=Os03t0223400-01
Chr03	irgsp1_rep	CDS	6458710	6458801	.	-	0	Parent=Os03t0223400-01
Chr03	irgsp1_rep	CDS	6458461	6458620	.	-	1	Parent=Os03t0223400-01
Chr03	irgsp1_rep	CDS	6458214	6458369	.	-	0	Parent=Os03t0223400-01
Chr03	irgsp1_rep	three_prime_UTR	6457915	6458213	.	-	.	Parent=Os03t0223400-01
Chr03	irgsp1_rep	mRNA	6466218	6466493	.	+	.	ID=Os03t0223550-00;Name=Os03t0223550-00;Locus_id=Os03g0223550;Note=Non-protein coding transcript.;Transcript_evidence=EU946994 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0223550-00
Chr03	irgsp1_rep	exon	6466218	6466493	.	+	.	Parent=Os03t0223550-00
Chr03	irgsp1_rep	mRNA	6468343	6476409	.	-	.	ID=Os03t0223700-01;Name=Os03t0223700-01;Locus_id=Os03g0223700;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK068416 (DDBJ%2C Best hit);ORF_evidence=NP_565275.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),HEAT%2C type 2 (IPR021133),Protein of unknown function DUF3434 (IPR021841);NIAS_FLcDNA=J013154C20;Expression=AK068416;TENOR=Os03t0223700-01;KEGG=Os03t0223700-01
Chr03	irgsp1_rep	five_prime_UTR	6476081	6476409	.	-	.	Parent=Os03t0223700-01
Chr03	irgsp1_rep	CDS	6475988	6476080	.	-	0	Parent=Os03t0223700-01
Chr03	irgsp1_rep	CDS	6475773	6475886	.	-	0	Parent=Os03t0223700-01
Chr03	irgsp1_rep	CDS	6475622	6475687	.	-	0	Parent=Os03t0223700-01
Chr03	irgsp1_rep	CDS	6475151	6475240	.	-	0	Parent=Os03t0223700-01
Chr03	irgsp1_rep	CDS	6474958	6475077	.	-	0	Parent=Os03t0223700-01
Chr03	irgsp1_rep	CDS	6474842	6474870	.	-	0	Parent=Os03t0223700-01
Chr03	irgsp1_rep	CDS	6474598	6474740	.	-	1	Parent=Os03t0223700-01
Chr03	irgsp1_rep	CDS	6474425	6474519	.	-	2	Parent=Os03t0223700-01
Chr03	irgsp1_rep	CDS	6474150	6474236	.	-	0	Parent=Os03t0223700-01
Chr03	irgsp1_rep	CDS	6473936	6474043	.	-	0	Parent=Os03t0223700-01
Chr03	irgsp1_rep	CDS	6473742	6473833	.	-	0	Parent=Os03t0223700-01
Chr03	irgsp1_rep	CDS	6473516	6473597	.	-	1	Parent=Os03t0223700-01
Chr03	irgsp1_rep	CDS	6473203	6473268	.	-	0	Parent=Os03t0223700-01
Chr03	irgsp1_rep	CDS	6472319	6472434	.	-	0	Parent=Os03t0223700-01
Chr03	irgsp1_rep	CDS	6472064	6472184	.	-	1	Parent=Os03t0223700-01
Chr03	irgsp1_rep	CDS	6471825	6471986	.	-	0	Parent=Os03t0223700-01
Chr03	irgsp1_rep	CDS	6471614	6471742	.	-	0	Parent=Os03t0223700-01
Chr03	irgsp1_rep	CDS	6470981	6471049	.	-	0	Parent=Os03t0223700-01
Chr03	irgsp1_rep	CDS	6469475	6469741	.	-	0	Parent=Os03t0223700-01
Chr03	irgsp1_rep	CDS	6468781	6468867	.	-	0	Parent=Os03t0223700-01
Chr03	irgsp1_rep	three_prime_UTR	6468343	6468780	.	-	.	Parent=Os03t0223700-01
Chr03	irgsp1_rep	mRNA	6480311	6480663	.	+	.	ID=Os03t0223800-00;Name=Os03t0223800-00;Locus_id=Os03g0223800;Note=Hypothetical conserved gene.;Transcript_evidence=EU974477 (DDBJ);ORF_evidence=B8AJN5 (UniProt);TENOR=Os03t0223800-00;KEGG=Os03t0223800-00
Chr03	irgsp1_rep	five_prime_UTR	6480311	6480423	.	+	.	Parent=Os03t0223800-00
Chr03	irgsp1_rep	CDS	6480424	6480648	.	+	0	Parent=Os03t0223800-00
Chr03	irgsp1_rep	three_prime_UTR	6480649	6480663	.	+	.	Parent=Os03t0223800-00
Chr03	irgsp1_rep	mRNA	6493908	6498974	.	+	.	ID=Os03t0223900-01;Name=Os03t0223900-01;Locus_id=Os03g0223900;Note=UDP-3-O-acyl N-acetylglucosamine deacetylase domain containing protein.;Transcript_evidence=AK066490 (DDBJ%2C Best hit);ORF_evidence=Q10PS0 (UniProt);GO=Biological Process: lipid A biosynthetic process (GO:0009245),Molecular Function: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity (GO:0008759);InterPro=UDP-3-O-acyl N-acetylglucosamine deacetylase (IPR004463),UDP-3-O-acyl N-acetylglucosamine deacetylase%2C C-terminal (IPR011334),UDP-3-O-acyl N-acetylglucosamine deacetylase%2C N-terminal (IPR015870),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=J013071N01;Expression=AK066490;TENOR=Os03t0223900-01;KEGG=Os03t0223900-01 (EC:3.5.1.-)
Chr03	irgsp1_rep	five_prime_UTR	6493908	6494016	.	+	.	Parent=Os03t0223900-01
Chr03	irgsp1_rep	CDS	6494017	6494079	.	+	0	Parent=Os03t0223900-01
Chr03	irgsp1_rep	CDS	6494149	6494448	.	+	0	Parent=Os03t0223900-01
Chr03	irgsp1_rep	CDS	6494571	6494777	.	+	0	Parent=Os03t0223900-01
Chr03	irgsp1_rep	CDS	6495693	6495791	.	+	0	Parent=Os03t0223900-01
Chr03	irgsp1_rep	CDS	6496155	6496219	.	+	0	Parent=Os03t0223900-01
Chr03	irgsp1_rep	CDS	6496833	6496977	.	+	1	Parent=Os03t0223900-01
Chr03	irgsp1_rep	CDS	6498571	6498657	.	+	0	Parent=Os03t0223900-01
Chr03	irgsp1_rep	three_prime_UTR	6498658	6498974	.	+	.	Parent=Os03t0223900-01
Chr03	irgsp1_rep	mRNA	6512771	6518511	.	+	.	ID=Os03t0224200-01;Name=Os03t0224200-01;Locus_id=Os03g0224200;RAP-DB Gene Symbol Synonym(s)=RR21%2C OsRR21%2C Rrb1%2C Orr1%2C OsRR19%2C OsRRB1%2C ORR1;RAP-DB Gene Name Synonym(s)=B-TYPE RESPONSE REGULATOR 1%2C B-type response regulator 1%2C B-type RR 1%2C ORYZA SATIVA RESPONSE REGULATOR 1;CGSNL Gene Symbol=RR21;CGSNL Gene Name=B-TYPE RESPONSE REGULATOR 1;Oryzabase Gene Symbol Synonym(s)=OsRR21%2C Rrb1%2C Orr1%2C OsRR19%2C OsRRB1%2C ORR1;Oryzabase Gene Name Synonym(s)=B-type response regulator 1%2C B-type RR 1%2C ORYZA SATIVA RESPONSE REGULATOR 1;Note=B-type response regulator%2C Cytokinin signaling;Transcript_evidence=BR000250 (DDBJ),AK111864 (DDBJ),AK111899 (DDBJ);ORF_evidence=Q8H7S7 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: two-component response regulator activity (GO:0000156),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),CheY-like superfamily (IPR011006),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Response regulator%2C plant B-type (IPR017053),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J033025G23,J023034P21;Manual Curation=May 20%2C 2010;Literature_PMID=16919402,17293362;Oryzabase=8148;TENOR=Os03t0224200-01
Chr03	irgsp1_rep	five_prime_UTR	6512771	6513026	.	+	.	Parent=Os03t0224200-01
Chr03	irgsp1_rep	CDS	6513027	6513150	.	+	0	Parent=Os03t0224200-01
Chr03	irgsp1_rep	CDS	6514853	6515005	.	+	2	Parent=Os03t0224200-01
Chr03	irgsp1_rep	CDS	6515088	6515486	.	+	2	Parent=Os03t0224200-01
Chr03	irgsp1_rep	CDS	6515664	6515740	.	+	2	Parent=Os03t0224200-01
Chr03	irgsp1_rep	CDS	6516496	6517818	.	+	0	Parent=Os03t0224200-01
Chr03	irgsp1_rep	three_prime_UTR	6517819	6517841	.	+	.	Parent=Os03t0224200-01
Chr03	irgsp1_rep	three_prime_UTR	6518260	6518511	.	+	.	Parent=Os03t0224200-01
Chr03	irgsp1_rep	mRNA	6512918	6518415	.	+	.	ID=Os03t0224200-02;Name=Os03t0224200-02;Locus_id=Os03g0224200;RAP-DB Gene Symbol Synonym(s)=ORR1%2C ORR1%2C Orr1%2C OsRR21%2C Rrb1%2C OsRR19%2C OsRRB1;RAP-DB Gene Name Synonym(s)=B-TYPE RESPONSE REGULATOR 1%2C B-type response regulator 1%2C B-type RR 1;CGSNL Gene Symbol=RR21;CGSNL Gene Name=B-TYPE RESPONSE REGULATOR 1;Oryzabase Gene Symbol Synonym(s)=OsRR21%2C Rrb1%2C Orr1%2C OsRR19%2C OsRRB1%2C ORR1;Oryzabase Gene Name Synonym(s)=B-type response regulator 1%2C B-type RR 1%2C ORYZA SATIVA RESPONSE REGULATOR 1;Note=B-type response regulator%2C Cytokinin signaling;Transcript_evidence=AB246780 (DDBJ);ORF_evidence=Q8H7S7 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: two-component response regulator activity (GO:0000156),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT/Myb domain (IPR001005),Signal transduction response regulator%2C receiver domain (IPR001789),Myb DNA-binding domain%2C plants (IPR006447),Homeodomain-like (IPR009057),CheY-like superfamily (IPR011006),Response regulator%2C plant B-type (IPR017053),Myb domain%2C DNA-binding (IPR017930);Manual Curation=May 20%2C 2010;Literature_PMID=16919402,17293362;Oryzabase=8148;TENOR=Os03t0224200-02
Chr03	irgsp1_rep	five_prime_UTR	6512918	6513026	.	+	.	Parent=Os03t0224200-02
Chr03	irgsp1_rep	CDS	6513027	6513150	.	+	0	Parent=Os03t0224200-02
Chr03	irgsp1_rep	CDS	6514853	6515005	.	+	2	Parent=Os03t0224200-02
Chr03	irgsp1_rep	CDS	6515088	6515486	.	+	2	Parent=Os03t0224200-02
Chr03	irgsp1_rep	CDS	6515664	6515740	.	+	2	Parent=Os03t0224200-02
Chr03	irgsp1_rep	CDS	6516496	6517818	.	+	0	Parent=Os03t0224200-02
Chr03	irgsp1_rep	three_prime_UTR	6517819	6517841	.	+	.	Parent=Os03t0224200-02
Chr03	irgsp1_rep	three_prime_UTR	6518260	6518415	.	+	.	Parent=Os03t0224200-02
Chr03	irgsp1_rep	mRNA	6515664	6518426	.	+	.	ID=Os03t0224200-03;Name=Os03t0224200-03;Locus_id=Os03g0224200;CGSNL Gene Symbol=RR21;CGSNL Gene Name=B-TYPE RESPONSE REGULATOR 1;Oryzabase Gene Symbol Synonym(s)=OsRR21%2C Rrb1%2C Orr1%2C OsRR19%2C OsRRB1%2C ORR1;Oryzabase Gene Name Synonym(s)=B-type response regulator 1%2C B-type RR 1%2C ORYZA SATIVA RESPONSE REGULATOR 1;Note=Similar to response regulator 8.;Transcript_evidence=AK112039 (DDBJ%2C Best hit);ORF_evidence=NP_001104861.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);NIAS_FLcDNA=001-044-C11;Oryzabase=8148;Expression=AK112039;TENOR=Os03t0224200-03
Chr03	irgsp1_rep	five_prime_UTR	6515664	6515665	.	+	.	Parent=Os03t0224200-03
Chr03	irgsp1_rep	CDS	6515666	6515740	.	+	0	Parent=Os03t0224200-03
Chr03	irgsp1_rep	CDS	6516496	6517818	.	+	0	Parent=Os03t0224200-03
Chr03	irgsp1_rep	three_prime_UTR	6517819	6517841	.	+	.	Parent=Os03t0224200-03
Chr03	irgsp1_rep	three_prime_UTR	6518260	6518426	.	+	.	Parent=Os03t0224200-03
Chr03	irgsp1_rep	mRNA	6519054	6522132	.	-	.	ID=Os03t0224300-01;Name=Os03t0224300-01;Locus_id=Os03g0224300;CGSNL Gene Symbol=TPS4;CGSNL Gene Name=TREHALOSE-6-PHOSPHATE SYNTHASE 4;Oryzabase Gene Symbol Synonym(s)=OsTPS4;Note=HAD-superfamily hydrolase subfamily IIB protein.;Transcript_evidence=AK100541 (DDBJ%2C Best hit);ORF_evidence=D2KLI5 (UniProt);GO=Biological Process: trehalose biosynthetic process (GO:0005992),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Glycosyl transferase%2C family 20 (IPR001830),Trehalose-phosphatase (IPR003337),HAD-superfamily hydrolase%2C subfamily IIB (IPR006379),HAD-like domain (IPR023214);NIAS_FLcDNA=J023102I04;Oryzabase=9043;Expression=AK100541;TENOR=Os03t0224300-01;KEGG=Os03t0224300-01
Chr03	irgsp1_rep	five_prime_UTR	6522132	6522132	.	-	.	Parent=Os03t0224300-01
Chr03	irgsp1_rep	CDS	6520450	6522131	.	-	0	Parent=Os03t0224300-01
Chr03	irgsp1_rep	CDS	6519812	6520085	.	-	1	Parent=Os03t0224300-01
Chr03	irgsp1_rep	CDS	6519405	6519719	.	-	0	Parent=Os03t0224300-01
Chr03	irgsp1_rep	three_prime_UTR	6519054	6519404	.	-	.	Parent=Os03t0224300-01
Chr03	irgsp1_rep	mRNA	6537573	6541381	.	+	.	ID=Os03t0224700-01;Name=Os03t0224700-01;Locus_id=Os03g0224700;CGSNL Gene Symbol=HSFA9;CGSNL Gene Name=HEAT STRESS TRANSCRIPTION FACTOR A9;Oryzabase Gene Symbol Synonym(s)=HSfA9%2C OsHsfA9%2C OsHsf-09%2C rHsf8%2C HSF09%2C OsHSF9%2C HSF9%2C HSF8%2C OsHsfA8%2C HsfA8;Oryzabase Gene Name Synonym(s)=Heat stress transcription factor A9%2C Heat stress transcription factor A-9%2C Heat stress transcription factor 9%2C Heat stress transcription factor 8;Note=Similar to HSP protein (Fragment).;Transcript_evidence=AK072571 (DDBJ%2C Best hit);ORF_evidence=Q10PR4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Heat shock factor (HSF)-type%2C DNA-binding (IPR000232),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=J023131M03;Oryzabase=8559;Expression=AK072571;TENOR=Os03t0224700-01;KEGG=Os03t0224700-01
Chr03	irgsp1_rep	five_prime_UTR	6537573	6537736	.	+	.	Parent=Os03t0224700-01
Chr03	irgsp1_rep	CDS	6537737	6538060	.	+	0	Parent=Os03t0224700-01
Chr03	irgsp1_rep	CDS	6539292	6540177	.	+	0	Parent=Os03t0224700-01
Chr03	irgsp1_rep	CDS	6540654	6540676	.	+	2	Parent=Os03t0224700-01
Chr03	irgsp1_rep	three_prime_UTR	6540677	6540711	.	+	.	Parent=Os03t0224700-01
Chr03	irgsp1_rep	three_prime_UTR	6541111	6541381	.	+	.	Parent=Os03t0224700-01
Chr03	irgsp1_rep	mRNA	6545153	6546478	.	-	.	ID=Os03t0225100-02;Name=Os03t0225100-02;Locus_id=Os03g0225100;RAP-DB Gene Symbol Synonym(s)=MPKK10.2%2C OsMKK10-2%2C MKK10-2D;RAP-DB Gene Name Synonym(s)=MAPK kinase 10.2;CGSNL Gene Symbol=MKK10-2;CGSNL Gene Name=MITOGEN-ACTIVATED PROTEIN KINASE KINASE 10-2;Oryzabase Gene Symbol Synonym(s)=OsMKK10-2%2C MKK10-2D%2C OsMPKK10-2%2C MPKK10-2%2C OsMPKK10-2D%2C MPKK10-2D%2C MPKK10.2;Oryzabase Gene Name Synonym(s)=MAPK kinase 10.2;Note=Mitogen-activated protein kinase (MAPK) kinase%2C Disease resistance%2C Drought tolerance;Transcript_evidence=AK070170,AK104423,EF666056 (Pusa Basmati-1);ORF_evidence=Q8H7S4,A2XE35 (indica);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),Protein kinase domain (IPR000719),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J023041A11,006-205-E09;Manual Curation=November 13%2C 2017;Literature_PMID=28857351,26485146,18619847;Oryzabase=8833;Expression=AK070170;TENOR=Os03t0225100-02;KEGG=Os03t0225100-02
Chr03	irgsp1_rep	five_prime_UTR	6546415	6546478	.	-	.	Parent=Os03t0225100-02
Chr03	irgsp1_rep	CDS	6545395	6546414	.	-	0	Parent=Os03t0225100-02
Chr03	irgsp1_rep	three_prime_UTR	6545153	6545394	.	-	.	Parent=Os03t0225100-02
Chr03	irgsp1_rep	mRNA	6545960	6546361	.	+	.	ID=Os03t0225150-00;Name=Os03t0225150-00;Locus_id=Os03g0225150;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os03t0225150-00
Chr03	irgsp1_rep	CDS	6545960	6546361	.	+	0	Parent=Os03t0225150-00
Chr03	irgsp1_rep	mRNA	6556389	6562025	.	-	.	ID=Os03t0225200-01;Name=Os03t0225200-01;Locus_id=Os03g0225200;CGSNL Gene Symbol=SDS;CGSNL Gene Name=SOLO DANCERS;Oryzabase Gene Symbol Synonym(s)=OsSDS%2C Orysa%3BSDS;Note=Cyclin%2C A/B/D/E domain containing protein.;Transcript_evidence=AK074008 (DDBJ%2C Best hit);ORF_evidence=NP_001149734.1 (RefSeq);GO=Biological Process: regulation of cyclin-dependent protein kinase activity (GO:0000079),Biological Process: regulation of cell cycle (GO:0051726),Cellular Component: nucleus (GO:0005634),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin%2C C-terminal (IPR004367),Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763),Cyclin A/B/D/E (IPR014400);NIAS_FLcDNA=J033078M15;Oryzabase=9119;Expression=AK074008;TENOR=Os03t0225200-01;KEGG=Os03t0225200-01
Chr03	irgsp1_rep	five_prime_UTR	6561966	6562025	.	-	.	Parent=Os03t0225200-01
Chr03	irgsp1_rep	CDS	6561282	6561965	.	-	0	Parent=Os03t0225200-01
Chr03	irgsp1_rep	CDS	6561007	6561177	.	-	0	Parent=Os03t0225200-01
Chr03	irgsp1_rep	CDS	6559777	6559943	.	-	0	Parent=Os03t0225200-01
Chr03	irgsp1_rep	CDS	6558429	6558557	.	-	1	Parent=Os03t0225200-01
Chr03	irgsp1_rep	CDS	6558161	6558341	.	-	1	Parent=Os03t0225200-01
Chr03	irgsp1_rep	CDS	6557859	6557903	.	-	0	Parent=Os03t0225200-01
Chr03	irgsp1_rep	CDS	6557703	6557735	.	-	0	Parent=Os03t0225200-01
Chr03	irgsp1_rep	three_prime_UTR	6557125	6557702	.	-	.	Parent=Os03t0225200-01
Chr03	irgsp1_rep	three_prime_UTR	6556876	6557049	.	-	.	Parent=Os03t0225200-01
Chr03	irgsp1_rep	three_prime_UTR	6556389	6556764	.	-	.	Parent=Os03t0225200-01
Chr03	irgsp1_rep	mRNA	6557321	6562023	.	-	.	ID=Os03t0225200-02;Name=Os03t0225200-02;Locus_id=Os03g0225200;CGSNL Gene Symbol=SDS;CGSNL Gene Name=SOLO DANCERS;Oryzabase Gene Symbol Synonym(s)=OsSDS%2C Orysa%3BSDS;Note=Similar to cyclin%2C N-terminal domain containing protein.;Transcript_evidence=AK065907 (DDBJ%2C Best hit);ORF_evidence=B7EN10 (UniProt);GO=Biological Process: regulation of cyclin-dependent protein kinase activity (GO:0000079),Biological Process: regulation of cell cycle (GO:0051726),Cellular Component: nucleus (GO:0005634),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin%2C C-terminal (IPR004367),Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763),Cyclin A/B/D/E (IPR014400);NIAS_FLcDNA=J013044F04;Oryzabase=9119;Expression=AK065907;TENOR=Os03t0225200-02;KEGG=Os03t0225200-02
Chr03	irgsp1_rep	five_prime_UTR	6561966	6562023	.	-	.	Parent=Os03t0225200-02
Chr03	irgsp1_rep	CDS	6561753	6561965	.	-	0	Parent=Os03t0225200-02
Chr03	irgsp1_rep	CDS	6561282	6561569	.	-	0	Parent=Os03t0225200-02
Chr03	irgsp1_rep	CDS	6561007	6561177	.	-	0	Parent=Os03t0225200-02
Chr03	irgsp1_rep	CDS	6559777	6559943	.	-	0	Parent=Os03t0225200-02
Chr03	irgsp1_rep	CDS	6558429	6558557	.	-	1	Parent=Os03t0225200-02
Chr03	irgsp1_rep	CDS	6558161	6558341	.	-	1	Parent=Os03t0225200-02
Chr03	irgsp1_rep	CDS	6557859	6557903	.	-	0	Parent=Os03t0225200-02
Chr03	irgsp1_rep	CDS	6557703	6557735	.	-	0	Parent=Os03t0225200-02
Chr03	irgsp1_rep	three_prime_UTR	6557321	6557702	.	-	.	Parent=Os03t0225200-02
Chr03	irgsp1_rep	mRNA	6563392	6565219	.	-	.	ID=Os03t0225300-01;Name=Os03t0225300-01;Locus_id=Os03g0225300;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK067384 (DDBJ%2C Best hit);ORF_evidence=A2XE38 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J013102E15;Expression=AK067384;TENOR=Os03t0225300-01;KEGG=Os03t0225300-01
Chr03	irgsp1_rep	five_prime_UTR	6565174	6565219	.	-	.	Parent=Os03t0225300-01
Chr03	irgsp1_rep	CDS	6563761	6565173	.	-	0	Parent=Os03t0225300-01
Chr03	irgsp1_rep	three_prime_UTR	6563392	6563760	.	-	.	Parent=Os03t0225300-01
Chr03	irgsp1_rep	mRNA	6573239	6580610	.	+	.	ID=Os03t0225500-01;Name=Os03t0225500-01;Locus_id=Os03g0225500;RAP-DB Gene Symbol Synonym(s)=NUP133;RAP-DB Gene Name Synonym(s)=NUCLEAR PORIN 133;CGSNL Gene Symbol=NUP133;CGSNL Gene Name=NUCLEAR PORIN 133;Oryzabase Gene Symbol Synonym(s)=NUP133;Note=Nucleoporin%2C Common symbiosis signaling (SYM) pathway;Transcript_evidence=AK073981 (Genbank);ORF_evidence=Q10PQ6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Nucleoporin%2C Nup133/Nup155-like%2C C-terminal (IPR007187),Nucleoporin%2C Nup133/Nup155-like%2C N-terminal (IPR014908),WD40/YVTN repeat-like-containing domain (IPR015943);NIAS_FLcDNA=J033076C04;Manual Curation=June 26%2C 2009;Literature_PMID=19033527,18794914;Oryzabase=8205;Expression=AK073981;TENOR=Os03t0225500-01;KEGG=Os03t0225500-01
Chr03	irgsp1_rep	five_prime_UTR	6573239	6573340	.	+	.	Parent=Os03t0225500-01
Chr03	irgsp1_rep	CDS	6573341	6573516	.	+	0	Parent=Os03t0225500-01
Chr03	irgsp1_rep	CDS	6573721	6573845	.	+	1	Parent=Os03t0225500-01
Chr03	irgsp1_rep	CDS	6573946	6575721	.	+	2	Parent=Os03t0225500-01
Chr03	irgsp1_rep	CDS	6576306	6577021	.	+	2	Parent=Os03t0225500-01
Chr03	irgsp1_rep	CDS	6578055	6578213	.	+	0	Parent=Os03t0225500-01
Chr03	irgsp1_rep	CDS	6578383	6578692	.	+	0	Parent=Os03t0225500-01
Chr03	irgsp1_rep	CDS	6579300	6579367	.	+	2	Parent=Os03t0225500-01
Chr03	irgsp1_rep	CDS	6579860	6580402	.	+	0	Parent=Os03t0225500-01
Chr03	irgsp1_rep	three_prime_UTR	6580403	6580610	.	+	.	Parent=Os03t0225500-01
Chr03	irgsp1_rep	mRNA	6573239	6575471	.	+	.	ID=Os03t0225500-02;Name=Os03t0225500-02;Locus_id=Os03g0225500;CGSNL Gene Symbol=NUP133;CGSNL Gene Name=NUCLEAR PORIN 133;Oryzabase Gene Symbol Synonym(s)=NUP133;Note=Nucleoporin%2C Nup133/Nup155-like%2C N-terminal domain containing protein.;Transcript_evidence=AK102984 (DDBJ%2C Best hit);ORF_evidence=B8AJK4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Nucleoporin%2C Nup133/Nup155-like%2C N-terminal (IPR014908),WD40/YVTN repeat-like-containing domain (IPR015943);NIAS_FLcDNA=J033116A08;Oryzabase=8205;Expression=AK102984;TENOR=Os03t0225500-02;KEGG=Os03t0225500-02
Chr03	irgsp1_rep	five_prime_UTR	6573239	6573340	.	+	.	Parent=Os03t0225500-02
Chr03	irgsp1_rep	CDS	6573341	6573516	.	+	0	Parent=Os03t0225500-02
Chr03	irgsp1_rep	CDS	6573721	6573845	.	+	1	Parent=Os03t0225500-02
Chr03	irgsp1_rep	CDS	6573946	6575471	.	+	2	Parent=Os03t0225500-02
Chr03	irgsp1_rep	mRNA	6587240	6587714	.	+	.	ID=Os03t0225600-01;Name=Os03t0225600-01;Locus_id=Os03g0225600;Note=Conserved oligomeric complex COG6 family protein.;Transcript_evidence=AK058500 (DDBJ%2C Best hit);ORF_evidence=B9F6B2 (UniProt);InterPro=Conserved oligomeric Golgi complex%2C subunit 6 (IPR010490);NIAS_FLcDNA=001-016-F03;Expression=AK058500;TENOR=Os03t0225600-01;KEGG=Os03t0225600-01
Chr03	irgsp1_rep	five_prime_UTR	6587240	6587241	.	+	.	Parent=Os03t0225600-01
Chr03	irgsp1_rep	CDS	6587242	6587586	.	+	0	Parent=Os03t0225600-01
Chr03	irgsp1_rep	three_prime_UTR	6587587	6587714	.	+	.	Parent=Os03t0225600-01
Chr03	irgsp1_rep	mRNA	6589784	6594037	.	+	.	ID=Os03t0225700-01;Name=Os03t0225700-01;Locus_id=Os03g0225700;RAP-DB Gene Symbol Synonym(s)=WAK25%2C OsWAK25;RAP-DB Gene Name Synonym(s)=WALL-ASSOCIATED KINASE GENE 25;CGSNL Gene Symbol=WAK25;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 25;Oryzabase Gene Symbol Synonym(s)=OsWAK25;Oryzabase Gene Name Synonym(s)=Wall-Associated Kinase 25;Note=Wall-associated kinase%2C Biotic stress response;Transcript_evidence=AK101690;ORF_evidence=Q8H7R6;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: polysaccharide binding (GO:0030247);InterPro=Wall-associated receptor kinase%2C galacturonan-binding domain (IPR025287),Concanavalin A-like lectin/glucanase domain (IPR013320),Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine/threonine/dual specificity protein kinase%2C catalytic  domain (IPR002290),Serine-threonine/tyrosine-protein kinase catalytic domain (IPR001245),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J033059I12;Manual Curation=January 29%2C 2016;Literature_PMID=26795719;Oryzabase=6926;Expression=AK101690;TENOR=Os03t0225700-01;KEGG=Os03t0225700-01
Chr03	irgsp1_rep	five_prime_UTR	6589784	6589789	.	+	.	Parent=Os03t0225700-01
Chr03	irgsp1_rep	CDS	6589790	6590558	.	+	0	Parent=Os03t0225700-01
Chr03	irgsp1_rep	CDS	6591563	6591637	.	+	2	Parent=Os03t0225700-01
Chr03	irgsp1_rep	CDS	6592631	6593901	.	+	2	Parent=Os03t0225700-01
Chr03	irgsp1_rep	three_prime_UTR	6593902	6594037	.	+	.	Parent=Os03t0225700-01
Chr03	irgsp1_rep	mRNA	6608577	6610549	.	+	.	ID=Os03t0225900-01;Name=Os03t0225900-01;Locus_id=Os03g0225900;RAP-DB Gene Symbol Synonym(s)=AOS2%2C OsAOS2%2C CYP74A2%2C OsAOS%2C OsAOS1;RAP-DB Gene Name Synonym(s)=ALLENE OXIDE SYNTHASE 2%2C Allene oxide synthase 2%2C CytoChrome P450 74A2%2C Hydroperoxide dehydrase 2%2C allene oxide synthase-1;CGSNL Gene Symbol=AOS2;CGSNL Gene Name=ALLENE OXIDE SYNTHASE 2;Oryzabase Gene Symbol Synonym(s)=OsAOS2%2C CYP74A2%2C OsAOS%2C OsAOS1;Oryzabase Gene Name Synonym(s)=Allene oxide synthase 2%2C CytoChrome P450 74A2%2C Hydroperoxide dehydrase 2%2C allene oxide synthase-1;Note=Allene oxide synthase (CYP74A2)%2C Biosynthesis of jasmonic acid (JA);Transcript_evidence=AY062258,AY310358,AY055775;ORF_evidence=Q7XYS3,Q10PQ1;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);Manual Curation=February 16%2C 2010;Literature_PMID=14988482,17022177,12596875;Oryzabase=8765;TENOR=Os03t0225900-01
Chr03	irgsp1_rep	five_prime_UTR	6608577	6608838	.	+	.	Parent=Os03t0225900-01
Chr03	irgsp1_rep	CDS	6608839	6610275	.	+	0	Parent=Os03t0225900-01
Chr03	irgsp1_rep	three_prime_UTR	6610276	6610549	.	+	.	Parent=Os03t0225900-01
Chr03	irgsp1_rep	mRNA	6608699	6610541	.	+	.	ID=Os03t0225900-02;Name=Os03t0225900-02;Locus_id=Os03g0225900;CGSNL Gene Symbol=AOS2;CGSNL Gene Name=ALLENE OXIDE SYNTHASE 2;Oryzabase Gene Symbol Synonym(s)=OsAOS2%2C CYP74A2%2C OsAOS%2C OsAOS1;Oryzabase Gene Name Synonym(s)=Allene oxide synthase 2%2C CytoChrome P450 74A2%2C Hydroperoxide dehydrase 2%2C allene oxide synthase-1;Note=Allene oxide synthase.;Transcript_evidence=AK061758 (DDBJ%2C Best hit);ORF_evidence=Q7XYS3 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);NIAS_FLcDNA=001-039-A10;Oryzabase=8765;Expression=AK061758;TENOR=Os03t0225900-02;KEGG=Os03t0225900-02
Chr03	irgsp1_rep	five_prime_UTR	6608699	6608838	.	+	.	Parent=Os03t0225900-02
Chr03	irgsp1_rep	CDS	6608839	6610275	.	+	0	Parent=Os03t0225900-02
Chr03	irgsp1_rep	three_prime_UTR	6610276	6610541	.	+	.	Parent=Os03t0225900-02
Chr03	irgsp1_rep	mRNA	6624980	6626080	.	-	.	ID=Os03t0226200-01;Name=Os03t0226200-01;Locus_id=Os03g0226200;RAP-DB Gene Symbol Synonym(s)=Hb2%2C OsPgb1.2;RAP-DB Gene Name Synonym(s)=non-symbiotic hemoglobin 2%2C phytoglobin 1.2;CGSNL Gene Symbol=Hb2;CGSNL Gene Name=HEMOGLOBIN 2;Oryzabase Gene Symbol Synonym(s)=HB2%2C OsHB2%2C OsNSHB2%2C hb2%2C GLB1b%2C ORYsa GLB1b%2C OsPgb1.2%2C Pgb1.2;Oryzabase Gene Name Synonym(s)=non-symbiotic hemoglobin 2%2C Non-legume hemoglobin%2C Phytogb1.2%2C phytoglobin 1.2;Note=Non-symbiotic hemoglobin%2C Phytoglobin%2C Response to low mineral nutrients and abiotic stresses;Transcript_evidence=AK121522;ORF_evidence=O04985;GO=Molecular Function: oxygen binding (GO:0019825),Molecular Function: heme binding (GO:0020037);InterPro=Globin-like superfamily (IPR009050),Globin/Protoglobin (IPR012292),Leghaemoglobin (IPR001032),Globin (IPR000971),Leghaemoglobin%2C iron-binding site (IPR019824);NIAS_FLcDNA=J033028N03;Manual Curation=October 1%2C 2020;Literature_PMID=29044557,21966570;Oryzabase=10194;Expression=AK121522;TENOR=Os03t0226200-01;KEGG=Os03t0226200-01;Subcellular location=cytosol (GO:0005829),nucleus (GO:0005634)
Chr03	irgsp1_rep	five_prime_UTR	6625996	6626080	.	-	.	Parent=Os03t0226200-01
Chr03	irgsp1_rep	CDS	6625859	6625995	.	-	0	Parent=Os03t0226200-01
Chr03	irgsp1_rep	CDS	6625613	6625727	.	-	1	Parent=Os03t0226200-01
Chr03	irgsp1_rep	CDS	6625396	6625512	.	-	0	Parent=Os03t0226200-01
Chr03	irgsp1_rep	CDS	6625163	6625303	.	-	0	Parent=Os03t0226200-01
Chr03	irgsp1_rep	three_prime_UTR	6624980	6625162	.	-	.	Parent=Os03t0226200-01
Chr03	irgsp1_rep	mRNA	6626961	6630244	.	+	.	ID=Os03t0226300-01;Name=Os03t0226300-01;Locus_id=Os03g0226300;CGSNL Gene Symbol=RLCK104;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 104;Oryzabase Gene Symbol Synonym(s)=OsRLCK104;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 104;Note=Similar to Pto kinase interactor 1.;Transcript_evidence=AK111731 (DDBJ%2C Best hit);ORF_evidence=Q709M1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Tyrosine-protein kinase%2C active site (IPR008266),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J023038I10;Oryzabase=18812;Expression=AK111731;TENOR=Os03t0226300-01;KEGG=Os03t0226300-01
Chr03	irgsp1_rep	five_prime_UTR	6626961	6627080	.	+	.	Parent=Os03t0226300-01
Chr03	irgsp1_rep	five_prime_UTR	6627322	6627436	.	+	.	Parent=Os03t0226300-01
Chr03	irgsp1_rep	CDS	6627437	6627536	.	+	0	Parent=Os03t0226300-01
Chr03	irgsp1_rep	CDS	6628079	6628332	.	+	2	Parent=Os03t0226300-01
Chr03	irgsp1_rep	CDS	6628441	6628567	.	+	0	Parent=Os03t0226300-01
Chr03	irgsp1_rep	CDS	6628703	6628976	.	+	2	Parent=Os03t0226300-01
Chr03	irgsp1_rep	CDS	6629122	6629254	.	+	1	Parent=Os03t0226300-01
Chr03	irgsp1_rep	CDS	6629404	6629490	.	+	0	Parent=Os03t0226300-01
Chr03	irgsp1_rep	CDS	6629573	6629692	.	+	0	Parent=Os03t0226300-01
Chr03	irgsp1_rep	three_prime_UTR	6629693	6630244	.	+	.	Parent=Os03t0226300-01
Chr03	irgsp1_rep	mRNA	6636675	6641550	.	+	.	ID=Os03t0226400-01;Name=Os03t0226400-01;Locus_id=Os03g0226400;RAP-DB Gene Symbol Synonym(s)=OsMTP8.1;RAP-DB Gene Name Synonym(s)=metal tolerance protein 8.1;CGSNL Gene Symbol=MTP8.1;CGSNL Gene Name=METAL TOLERANCE PROTEIN 8.1;Oryzabase Gene Symbol Synonym(s)=OsMTP8.1;Oryzabase Gene Name Synonym(s)=metal tolerance protein 8.1;Note=Manganese transporter%2C Cation diffusion facilitator (CDF) family member%2C Mn tolerance;Transcript_evidence=AK065961;ORF_evidence=Q10PP8;GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Molecular Function: cation transmembrane transporter activity (GO:0008324),Cellular Component: integral component of membrane (GO:0016021);InterPro=Cation efflux protein (IPR002524),Cation efflux protein transmembrane domain (IPR027469),Cation efflux protein%2C cytoplasmic domain (IPR027470);NIAS_FLcDNA=J013043M15;Manual Curation=September 8%2C 2016;Literature_PMID=27555514,23963678;Oryzabase=13407;TENOR=Os03t0226400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	6636675	6636807	.	+	.	Parent=Os03t0226400-01
Chr03	irgsp1_rep	CDS	6636808	6636985	.	+	0	Parent=Os03t0226400-01
Chr03	irgsp1_rep	CDS	6638972	6639144	.	+	2	Parent=Os03t0226400-01
Chr03	irgsp1_rep	CDS	6639226	6639424	.	+	0	Parent=Os03t0226400-01
Chr03	irgsp1_rep	CDS	6639605	6639783	.	+	2	Parent=Os03t0226400-01
Chr03	irgsp1_rep	CDS	6639876	6640026	.	+	0	Parent=Os03t0226400-01
Chr03	irgsp1_rep	CDS	6640365	6640498	.	+	2	Parent=Os03t0226400-01
Chr03	irgsp1_rep	CDS	6640594	6640773	.	+	0	Parent=Os03t0226400-01
Chr03	irgsp1_rep	three_prime_UTR	6640774	6641550	.	+	.	Parent=Os03t0226400-01
Chr03	irgsp1_rep	mRNA	6636721	6641174	.	+	.	ID=Os03t0226400-02;Name=Os03t0226400-02;Locus_id=Os03g0226400;CGSNL Gene Symbol=MTP8.1;CGSNL Gene Name=METAL TOLERANCE PROTEIN 8.1;Oryzabase Gene Symbol Synonym(s)=OsMTP8.1;Oryzabase Gene Name Synonym(s)=metal tolerance protein 8.1;Note=Similar to Metal tolerance protein 4.;Transcript_evidence=AK070223 (DDBJ%2C Best hit);ORF_evidence=Q10PP8 (UniProt);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: cation transmembrane transporter activity (GO:0008324);InterPro=Cation efflux protein (IPR002524);NIAS_FLcDNA=J023041B15;Oryzabase=13407;TENOR=Os03t0226400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	6636721	6636807	.	+	.	Parent=Os03t0226400-02
Chr03	irgsp1_rep	CDS	6636808	6636985	.	+	0	Parent=Os03t0226400-02
Chr03	irgsp1_rep	CDS	6638972	6639144	.	+	2	Parent=Os03t0226400-02
Chr03	irgsp1_rep	CDS	6639226	6639424	.	+	0	Parent=Os03t0226400-02
Chr03	irgsp1_rep	CDS	6639605	6639783	.	+	2	Parent=Os03t0226400-02
Chr03	irgsp1_rep	CDS	6639876	6640026	.	+	0	Parent=Os03t0226400-02
Chr03	irgsp1_rep	CDS	6640365	6640498	.	+	2	Parent=Os03t0226400-02
Chr03	irgsp1_rep	CDS	6640594	6640773	.	+	0	Parent=Os03t0226400-02
Chr03	irgsp1_rep	three_prime_UTR	6640774	6641174	.	+	.	Parent=Os03t0226400-02
Chr03	irgsp1_rep	mRNA	6636837	6640774	.	-	.	ID=Os03t0226501-00;Name=Os03t0226501-00;Locus_id=Os03g0226501;Note=Hypothetical protein.;Transcript_evidence=tplb0026c09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0226501-00
Chr03	irgsp1_rep	five_prime_UTR	6640584	6640774	.	-	.	Parent=Os03t0226501-00
Chr03	irgsp1_rep	five_prime_UTR	6640371	6640488	.	-	.	Parent=Os03t0226501-00
Chr03	irgsp1_rep	five_prime_UTR	6639874	6640036	.	-	.	Parent=Os03t0226501-00
Chr03	irgsp1_rep	five_prime_UTR	6639600	6639778	.	-	.	Parent=Os03t0226501-00
Chr03	irgsp1_rep	five_prime_UTR	6639209	6639419	.	-	.	Parent=Os03t0226501-00
Chr03	irgsp1_rep	five_prime_UTR	6639102	6639129	.	-	.	Parent=Os03t0226501-00
Chr03	irgsp1_rep	CDS	6638996	6639101	.	-	0	Parent=Os03t0226501-00
Chr03	irgsp1_rep	CDS	6636837	6637015	.	-	2	Parent=Os03t0226501-00
Chr03	irgsp1_rep	mRNA	6647026	6653918	.	+	.	ID=Os03t0226600-01;Name=Os03t0226600-01;Locus_id=Os03g0226600;Note=Similar to cDNA clone:J023007A11%2C full insert sequence.;Transcript_evidence=AK121288 (DDBJ%2C Best hit);ORF_evidence=B7EG01 (UniProt);NIAS_FLcDNA=J023109B15;Expression=AK121288;TENOR=Os03t0226600-01;KEGG=Os03t0226600-01
Chr03	irgsp1_rep	five_prime_UTR	6647026	6647388	.	+	.	Parent=Os03t0226600-01
Chr03	irgsp1_rep	five_prime_UTR	6648651	6648983	.	+	.	Parent=Os03t0226600-01
Chr03	irgsp1_rep	five_prime_UTR	6649214	6649473	.	+	.	Parent=Os03t0226600-01
Chr03	irgsp1_rep	five_prime_UTR	6649834	6649975	.	+	.	Parent=Os03t0226600-01
Chr03	irgsp1_rep	five_prime_UTR	6650073	6650444	.	+	.	Parent=Os03t0226600-01
Chr03	irgsp1_rep	five_prime_UTR	6650562	6651541	.	+	.	Parent=Os03t0226600-01
Chr03	irgsp1_rep	five_prime_UTR	6651631	6651684	.	+	.	Parent=Os03t0226600-01
Chr03	irgsp1_rep	CDS	6651685	6653694	.	+	0	Parent=Os03t0226600-01
Chr03	irgsp1_rep	three_prime_UTR	6653695	6653918	.	+	.	Parent=Os03t0226600-01
Chr03	irgsp1_rep	mRNA	6650052	6653807	.	+	.	ID=Os03t0226600-02;Name=Os03t0226600-02;Locus_id=Os03g0226600;Note=Hypothetical conserved gene.;Transcript_evidence=AK069173 (DDBJ%2C Best hit);ORF_evidence=A2XE49 (UniProt);NIAS_FLcDNA=J023007A11;Expression=AK069173;TENOR=Os03t0226600-02;KEGG=Os03t0226600-02
Chr03	irgsp1_rep	five_prime_UTR	6650052	6650072	.	+	.	Parent=Os03t0226600-02
Chr03	irgsp1_rep	CDS	6650073	6650444	.	+	0	Parent=Os03t0226600-02
Chr03	irgsp1_rep	CDS	6650562	6650693	.	+	0	Parent=Os03t0226600-02
Chr03	irgsp1_rep	CDS	6651413	6651541	.	+	0	Parent=Os03t0226600-02
Chr03	irgsp1_rep	CDS	6651631	6653694	.	+	0	Parent=Os03t0226600-02
Chr03	irgsp1_rep	three_prime_UTR	6653695	6653807	.	+	.	Parent=Os03t0226600-02
Chr03	irgsp1_rep	mRNA	6654751	6656679	.	-	.	ID=Os03t0226700-01;Name=Os03t0226700-01;Locus_id=Os03g0226700;Note=Conserved hypothetical protein.;Transcript_evidence=AK287950 (DDBJ%2C Best hit);ORF_evidence=NP_001049441.1 (RefSeq);NIAS_FLcDNA=J075030F02;TENOR=Os03t0226700-01;KEGG=Os03t0226700-01
Chr03	irgsp1_rep	five_prime_UTR	6656627	6656679	.	-	.	Parent=Os03t0226700-01
Chr03	irgsp1_rep	CDS	6656032	6656626	.	-	0	Parent=Os03t0226700-01
Chr03	irgsp1_rep	CDS	6654851	6655044	.	-	2	Parent=Os03t0226700-01
Chr03	irgsp1_rep	three_prime_UTR	6654751	6654850	.	-	.	Parent=Os03t0226700-01
Chr03	irgsp1_rep	mRNA	6657601	6663830	.	+	.	ID=Os03t0226800-01;Name=Os03t0226800-01;Locus_id=Os03g0226800;CGSNL Gene Symbol=CMT1;CGSNL Gene Name=CHROMOMETHYLTRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=OsCMT1%2C OsCMT3b;Oryzabase Gene Name Synonym(s)=Chromomethyltransferase 1%2C Chromomethylase 3b;Note=Similar to Cytosine-specific methyltransferase.;Transcript_evidence=AK242575 (DDBJ%2C Best hit);ORF_evidence=Q8H854 (UniProt);GO=Biological Process: DNA methylation (GO:0006306),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Chromo domain/shadow (IPR000953),Bromo adjacent homology (BAH) domain (IPR001025),C-5 cytosine methyltransferase (IPR001525),Chromo domain-like (IPR016197),DNA methylase%2C C-5 cytosine-specific%2C active site (IPR018117),Chromo domain%2C conserved site (IPR023779),Chromo domain (IPR023780);NIAS_FLcDNA=J090008P19;Oryzabase=10400;TENOR=Os03t0226800-01;KEGG=Os03t0226800-01 (EC:2.1.1.37)
Chr03	irgsp1_rep	five_prime_UTR	6657601	6657844	.	+	.	Parent=Os03t0226800-01
Chr03	irgsp1_rep	CDS	6657845	6658690	.	+	0	Parent=Os03t0226800-01
Chr03	irgsp1_rep	CDS	6658820	6658845	.	+	0	Parent=Os03t0226800-01
Chr03	irgsp1_rep	CDS	6658941	6659037	.	+	1	Parent=Os03t0226800-01
Chr03	irgsp1_rep	CDS	6659515	6659622	.	+	0	Parent=Os03t0226800-01
Chr03	irgsp1_rep	CDS	6659700	6659834	.	+	0	Parent=Os03t0226800-01
Chr03	irgsp1_rep	CDS	6659935	6660034	.	+	0	Parent=Os03t0226800-01
Chr03	irgsp1_rep	CDS	6660269	6660480	.	+	2	Parent=Os03t0226800-01
Chr03	irgsp1_rep	CDS	6660566	6660631	.	+	0	Parent=Os03t0226800-01
Chr03	irgsp1_rep	CDS	6660737	6660970	.	+	0	Parent=Os03t0226800-01
Chr03	irgsp1_rep	CDS	6661089	6661147	.	+	0	Parent=Os03t0226800-01
Chr03	irgsp1_rep	CDS	6661222	6661288	.	+	1	Parent=Os03t0226800-01
Chr03	irgsp1_rep	CDS	6661369	6661698	.	+	0	Parent=Os03t0226800-01
Chr03	irgsp1_rep	CDS	6661773	6661841	.	+	0	Parent=Os03t0226800-01
Chr03	irgsp1_rep	CDS	6661923	6662009	.	+	0	Parent=Os03t0226800-01
Chr03	irgsp1_rep	CDS	6662111	6662198	.	+	0	Parent=Os03t0226800-01
Chr03	irgsp1_rep	CDS	6662563	6662684	.	+	2	Parent=Os03t0226800-01
Chr03	irgsp1_rep	CDS	6662757	6662861	.	+	0	Parent=Os03t0226800-01
Chr03	irgsp1_rep	CDS	6662948	6662991	.	+	0	Parent=Os03t0226800-01
Chr03	irgsp1_rep	CDS	6663064	6663133	.	+	1	Parent=Os03t0226800-01
Chr03	irgsp1_rep	CDS	6663217	6663320	.	+	0	Parent=Os03t0226800-01
Chr03	irgsp1_rep	CDS	6663486	6663696	.	+	1	Parent=Os03t0226800-01
Chr03	irgsp1_rep	three_prime_UTR	6663697	6663830	.	+	.	Parent=Os03t0226800-01
Chr03	irgsp1_rep	mRNA	6665660	6668464	.	+	.	ID=Os03t0226901-00;Name=Os03t0226901-00;Locus_id=Os03g0226901;CGSNL Gene Symbol=CMT1;CGSNL Gene Name=CHROMOMETHYLTRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=OsCMT1%2C OsCMT3b;Oryzabase Gene Name Synonym(s)=Chromomethyltransferase 1%2C Chromomethylase 3b;Note=Similar to C-5 cytosine-specific DNA methylase family protein%2C expressed.;Transcript_evidence=AK372631 (DDBJ);ORF_evidence=Q8H854 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=10400;TENOR=Os03t0226901-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	6665660	6666509	.	+	0	Parent=Os03t0226901-00
Chr03	irgsp1_rep	CDS	6666621	6667106	.	+	2	Parent=Os03t0226901-00
Chr03	irgsp1_rep	CDS	6667209	6667295	.	+	2	Parent=Os03t0226901-00
Chr03	irgsp1_rep	CDS	6667406	6667476	.	+	2	Parent=Os03t0226901-00
Chr03	irgsp1_rep	CDS	6667555	6667631	.	+	0	Parent=Os03t0226901-00
Chr03	irgsp1_rep	CDS	6667721	6667865	.	+	1	Parent=Os03t0226901-00
Chr03	irgsp1_rep	CDS	6667968	6668132	.	+	0	Parent=Os03t0226901-00
Chr03	irgsp1_rep	CDS	6668231	6668464	.	+	0	Parent=Os03t0226901-00
Chr03	irgsp1_rep	mRNA	6676410	6683840	.	+	.	ID=Os03t0227000-01;Name=Os03t0227000-01;Locus_id=Os03g0227000;Note=Similar to Coatomer gamma subunit (Gamma-coat protein) (Gamma-COP).;Transcript_evidence=AK068454 (DDBJ%2C Best hit);ORF_evidence=B8AJK8 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: Golgi-associated vesicle (GO:0005798),Cellular Component: membrane coat (GO:0030117),Cellular Component: COPI vesicle coat (GO:0030126),Molecular Function: structural molecule activity (GO:0005198),Molecular Function: binding (GO:0005488);InterPro=Clathrin/coatomer adaptor%2C adaptin-like%2C N-terminal (IPR002553),Coatomer/calthrin adaptor appendage%2C C-terminal subdomain (IPR009028),Armadillo-like helical (IPR011989),Coatomer%2C gamma subunit%2C appendage%2C Ig-like subdomain (IPR013040),Coatomer/clathrin adaptor appendage%2C Ig-like subdomain (IPR013041),Coatomer%2C gamma subunit %2C appendage (IPR014863),Clathrin alpha-adaptin/coatomer adaptor%2C appendage%2C C-terminal subdomain (IPR015873),Armadillo-type fold (IPR016024),Coatomer%2C gamma subunit (IPR017106);NIAS_FLcDNA=J013155G01;Expression=AK068454;TENOR=Os03t0227000-01;KEGG=Os03t0227000-01
Chr03	irgsp1_rep	five_prime_UTR	6676410	6676549	.	+	.	Parent=Os03t0227000-01
Chr03	irgsp1_rep	CDS	6676550	6676631	.	+	0	Parent=Os03t0227000-01
Chr03	irgsp1_rep	CDS	6677724	6677821	.	+	2	Parent=Os03t0227000-01
Chr03	irgsp1_rep	CDS	6677954	6678004	.	+	0	Parent=Os03t0227000-01
Chr03	irgsp1_rep	CDS	6678079	6678192	.	+	0	Parent=Os03t0227000-01
Chr03	irgsp1_rep	CDS	6678277	6678477	.	+	0	Parent=Os03t0227000-01
Chr03	irgsp1_rep	CDS	6678553	6678654	.	+	0	Parent=Os03t0227000-01
Chr03	irgsp1_rep	CDS	6679751	6679858	.	+	0	Parent=Os03t0227000-01
Chr03	irgsp1_rep	CDS	6679937	6680167	.	+	0	Parent=Os03t0227000-01
Chr03	irgsp1_rep	CDS	6680251	6680501	.	+	0	Parent=Os03t0227000-01
Chr03	irgsp1_rep	CDS	6680614	6680785	.	+	1	Parent=Os03t0227000-01
Chr03	irgsp1_rep	CDS	6681061	6681216	.	+	0	Parent=Os03t0227000-01
Chr03	irgsp1_rep	CDS	6681313	6681363	.	+	0	Parent=Os03t0227000-01
Chr03	irgsp1_rep	CDS	6681559	6681699	.	+	0	Parent=Os03t0227000-01
Chr03	irgsp1_rep	CDS	6681776	6681970	.	+	0	Parent=Os03t0227000-01
Chr03	irgsp1_rep	CDS	6682040	6682171	.	+	0	Parent=Os03t0227000-01
Chr03	irgsp1_rep	CDS	6682274	6682447	.	+	0	Parent=Os03t0227000-01
Chr03	irgsp1_rep	CDS	6682902	6683141	.	+	0	Parent=Os03t0227000-01
Chr03	irgsp1_rep	CDS	6683267	6683461	.	+	0	Parent=Os03t0227000-01
Chr03	irgsp1_rep	three_prime_UTR	6683462	6683840	.	+	.	Parent=Os03t0227000-01
Chr03	irgsp1_rep	mRNA	6683993	6684066	.	-	.	ID=Os03t0227075-00;Name=Os03t0227075-00;Locus_id=Os03g0227075;Note=Non-protein coding transcript.;Transcript_evidence=X06284 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0227075-00
Chr03	irgsp1_rep	exon	6683993	6684066	.	-	.	Parent=Os03t0227075-00
Chr03	irgsp1_rep	mRNA	6698297	6706333	.	+	.	ID=Os03t0227300-01;Name=Os03t0227300-01;Locus_id=Os03g0227300;Note=5'-3' exonuclease domain containing protein.;Transcript_evidence=AK072579 (DDBJ%2C Best hit);ORF_evidence=Q10PN8 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: catalytic activity (GO:0003824),Molecular Function: 5'-3' exonuclease activity (GO:0008409);InterPro=5&apos%3B-3&apos%3B exonuclease%2C N-terminal (IPR002421),Helix-hairpin-helix motif%2C class 2 (IPR008918),5&apos%3B-3&apos%3B exonuclease%2C C-terminal domain (IPR020045),5&apos%3B-3&apos%3B exonuclease%2C alpha-helical arch%2C N-terminal (IPR020046);NIAS_FLcDNA=J023130B17;Expression=AK072579;TENOR=Os03t0227300-01;KEGG=Os03t0227300-01
Chr03	irgsp1_rep	five_prime_UTR	6698297	6698609	.	+	.	Parent=Os03t0227300-01
Chr03	irgsp1_rep	CDS	6698610	6698708	.	+	0	Parent=Os03t0227300-01
Chr03	irgsp1_rep	CDS	6699036	6699267	.	+	0	Parent=Os03t0227300-01
Chr03	irgsp1_rep	CDS	6699977	6700056	.	+	2	Parent=Os03t0227300-01
Chr03	irgsp1_rep	CDS	6700835	6700873	.	+	0	Parent=Os03t0227300-01
Chr03	irgsp1_rep	CDS	6701411	6701429	.	+	0	Parent=Os03t0227300-01
Chr03	irgsp1_rep	CDS	6702302	6702358	.	+	2	Parent=Os03t0227300-01
Chr03	irgsp1_rep	CDS	6702938	6703065	.	+	2	Parent=Os03t0227300-01
Chr03	irgsp1_rep	CDS	6703150	6703218	.	+	0	Parent=Os03t0227300-01
Chr03	irgsp1_rep	CDS	6703622	6703707	.	+	0	Parent=Os03t0227300-01
Chr03	irgsp1_rep	CDS	6703791	6703900	.	+	1	Parent=Os03t0227300-01
Chr03	irgsp1_rep	CDS	6704566	6704616	.	+	2	Parent=Os03t0227300-01
Chr03	irgsp1_rep	CDS	6705108	6705166	.	+	2	Parent=Os03t0227300-01
Chr03	irgsp1_rep	CDS	6705459	6705503	.	+	0	Parent=Os03t0227300-01
Chr03	irgsp1_rep	CDS	6705638	6705712	.	+	0	Parent=Os03t0227300-01
Chr03	irgsp1_rep	CDS	6705820	6705936	.	+	0	Parent=Os03t0227300-01
Chr03	irgsp1_rep	three_prime_UTR	6705937	6706333	.	+	.	Parent=Os03t0227300-01
Chr03	irgsp1_rep	mRNA	6706278	6708143	.	-	.	ID=Os03t0227400-01;Name=Os03t0227400-01;Locus_id=Os03g0227400;Note=Similar to glucan endo-1%2C3-beta-glucosidase 7.;Transcript_evidence=AK242028 (DDBJ%2C Best hit);ORF_evidence=B4FYP4 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J075115C11;TENOR=Os03t0227400-01;KEGG=Os03t0227400-01
Chr03	irgsp1_rep	five_prime_UTR	6708061	6708143	.	-	.	Parent=Os03t0227400-01
Chr03	irgsp1_rep	CDS	6707668	6708060	.	-	0	Parent=Os03t0227400-01
Chr03	irgsp1_rep	CDS	6706889	6707593	.	-	0	Parent=Os03t0227400-01
Chr03	irgsp1_rep	three_prime_UTR	6706278	6706888	.	-	.	Parent=Os03t0227400-01
Chr03	irgsp1_rep	mRNA	6716409	6720022	.	+	.	ID=Os03t0227500-01;Name=Os03t0227500-01;Locus_id=Os03g0227500;Note=Conserved hypothetical protein.;Transcript_evidence=AK063077 (DDBJ%2C Best hit);ORF_evidence=B8AJL2 (UniProt);NIAS_FLcDNA=001-110-H10;Expression=AK063077;TENOR=Os03t0227500-01;KEGG=Os03t0227500-01
Chr03	irgsp1_rep	five_prime_UTR	6716409	6716514	.	+	.	Parent=Os03t0227500-01
Chr03	irgsp1_rep	CDS	6716515	6716627	.	+	0	Parent=Os03t0227500-01
Chr03	irgsp1_rep	CDS	6719768	6719975	.	+	1	Parent=Os03t0227500-01
Chr03	irgsp1_rep	three_prime_UTR	6719976	6720022	.	+	.	Parent=Os03t0227500-01
Chr03	irgsp1_rep	mRNA	6716431	6720052	.	+	.	ID=Os03t0227500-02;Name=Os03t0227500-02;Locus_id=Os03g0227500;Note=Conserved hypothetical protein.;Transcript_evidence=AK072301 (DDBJ%2C Best hit);ORF_evidence=B8AJL2 (UniProt);NIAS_FLcDNA=J023022A03;TENOR=Os03t0227500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	6716431	6719744	.	+	.	Parent=Os03t0227500-02
Chr03	irgsp1_rep	CDS	6719745	6719975	.	+	0	Parent=Os03t0227500-02
Chr03	irgsp1_rep	three_prime_UTR	6719976	6720052	.	+	.	Parent=Os03t0227500-02
Chr03	irgsp1_rep	mRNA	6735224	6740082	.	-	.	ID=Os03t0227601-01;Name=Os03t0227601-01;Locus_id=Os03g0227601;Note=Hypothetical gene.;Transcript_evidence=AK288782 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090069D21;TENOR=Os03t0227601-01;KEGG=Os03t0227601-01
Chr03	irgsp1_rep	five_prime_UTR	6738571	6740082	.	-	.	Parent=Os03t0227601-01
Chr03	irgsp1_rep	CDS	6738115	6738570	.	-	0	Parent=Os03t0227601-01
Chr03	irgsp1_rep	three_prime_UTR	6735224	6738114	.	-	.	Parent=Os03t0227601-01
Chr03	irgsp1_rep	mRNA	6737549	6744486	.	+	.	ID=Os03t0227700-01;Name=Os03t0227700-01;Locus_id=Os03g0227700;RAP-DB Gene Symbol Synonym(s)=OsDWF4%2C OsDWARF4%2C CYP90B2;RAP-DB Gene Name Synonym(s)=DWARF4;CGSNL Gene Symbol=DWARF4;CGSNL Gene Name=DWARF4;Oryzabase Gene Symbol Synonym(s)=OsDWARF4%2C osdwarf4%2C OsDWF4%2C DWF4%2C CYP90B2%2C OsCYP90B2%2C D4%2C OsD4;Oryzabase Gene Name Synonym(s)=brassinosteroid C-22 hydroxylase%2C CytoChrome P450 90B2;Note=CytoChrome P450 90B2%2C Brassinosteroid C-22 hydroxylase%2C Brassinosteroids biosynthesis;Transcript_evidence=AK243298,AB206579;ORF_evidence=Q5CCK3;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 superfamily (IPR036396),CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);NIAS_FLcDNA=J100053J04;Manual Curation=April 20%2C 2018;Literature_PMID=29613784,16369540;Oryzabase=9061;TENOR=Os03t0227700-01;KEGG=Os03t0227700-01 (EC:1.14.13.-)
Chr03	irgsp1_rep	five_prime_UTR	6737549	6737772	.	+	.	Parent=Os03t0227700-01
Chr03	irgsp1_rep	CDS	6737773	6738038	.	+	0	Parent=Os03t0227700-01
Chr03	irgsp1_rep	CDS	6738207	6738531	.	+	1	Parent=Os03t0227700-01
Chr03	irgsp1_rep	CDS	6738635	6738787	.	+	0	Parent=Os03t0227700-01
Chr03	irgsp1_rep	CDS	6741601	6741852	.	+	0	Parent=Os03t0227700-01
Chr03	irgsp1_rep	CDS	6742001	6742093	.	+	0	Parent=Os03t0227700-01
Chr03	irgsp1_rep	CDS	6742886	6742964	.	+	0	Parent=Os03t0227700-01
Chr03	irgsp1_rep	CDS	6743062	6743168	.	+	2	Parent=Os03t0227700-01
Chr03	irgsp1_rep	CDS	6744056	6744301	.	+	0	Parent=Os03t0227700-01
Chr03	irgsp1_rep	three_prime_UTR	6744302	6744486	.	+	.	Parent=Os03t0227700-01
Chr03	irgsp1_rep	mRNA	6753995	6754315	.	-	.	ID=Os03t0227750-00;Name=Os03t0227750-00;Locus_id=Os03g0227750;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os03t0227750-00;KEGG=Os03t0227750-00
Chr03	irgsp1_rep	CDS	6753995	6754315	.	-	0	Parent=Os03t0227750-00
Chr03	irgsp1_rep	mRNA	6754275	6754977	.	+	.	ID=Os03t0227800-01;Name=Os03t0227800-01;Locus_id=Os03g0227800;Note=Conserved hypothetical protein.;Transcript_evidence=AK063571 (DDBJ%2C Best hit),AK103846 (DDBJ%2C Best hit);ORF_evidence=Q8H847 (UniProt);NIAS_FLcDNA=001-117-G06,J033148J22;TENOR=Os03t0227800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	6754275	6754579	.	+	.	Parent=Os03t0227800-01
Chr03	irgsp1_rep	five_prime_UTR	6754698	6754703	.	+	.	Parent=Os03t0227800-01
Chr03	irgsp1_rep	CDS	6754704	6754835	.	+	0	Parent=Os03t0227800-01
Chr03	irgsp1_rep	three_prime_UTR	6754836	6754977	.	+	.	Parent=Os03t0227800-01
Chr03	irgsp1_rep	mRNA	6754275	6756589	.	+	.	ID=Os03t0227800-02;Name=Os03t0227800-02;Locus_id=Os03g0227800;Note=Similar to cDNA clone:001-004-G07%2C full insert sequence.;Transcript_evidence=AK061960 (DDBJ%2C Best hit);ORF_evidence=B7E365 (UniProt);NIAS_FLcDNA=001-042-G02;TENOR=Os03t0227800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	6754275	6754579	.	+	.	Parent=Os03t0227800-02
Chr03	irgsp1_rep	five_prime_UTR	6754698	6755037	.	+	.	Parent=Os03t0227800-02
Chr03	irgsp1_rep	CDS	6755038	6755233	.	+	0	Parent=Os03t0227800-02
Chr03	irgsp1_rep	CDS	6756046	6756083	.	+	2	Parent=Os03t0227800-02
Chr03	irgsp1_rep	three_prime_UTR	6756084	6756589	.	+	.	Parent=Os03t0227800-02
Chr03	irgsp1_rep	mRNA	6754987	6755681	.	+	.	ID=Os03t0227800-03;Name=Os03t0227800-03;Locus_id=Os03g0227800;Note=Similar to cDNA clone:001-042-G02%2C full insert sequence.;Transcript_evidence=AK058847 (DDBJ%2C Best hit);ORF_evidence=B7E735 (UniProt);NIAS_FLcDNA=001-004-G07;Expression=AK058847;TENOR=Os03t0227800-03;KEGG=Os03t0227800-03
Chr03	irgsp1_rep	five_prime_UTR	6754987	6755037	.	+	.	Parent=Os03t0227800-03
Chr03	irgsp1_rep	CDS	6755038	6755265	.	+	0	Parent=Os03t0227800-03
Chr03	irgsp1_rep	three_prime_UTR	6755266	6755681	.	+	.	Parent=Os03t0227800-03
Chr03	irgsp1_rep	mRNA	6763115	6767691	.	-	.	ID=Os03t0227900-00;Name=Os03t0227900-00;Locus_id=Os03g0227900;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=tplb0007p05 (Wheat FLcDNA);ORF_evidence=Q8H846 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);TENOR=Os03t0227900-00;KEGG=Os03t0227900-00
Chr03	irgsp1_rep	five_prime_UTR	6767621	6767691	.	-	.	Parent=Os03t0227900-00
Chr03	irgsp1_rep	CDS	6767031	6767620	.	-	0	Parent=Os03t0227900-00
Chr03	irgsp1_rep	CDS	6764744	6764848	.	-	1	Parent=Os03t0227900-00
Chr03	irgsp1_rep	CDS	6764497	6764619	.	-	1	Parent=Os03t0227900-00
Chr03	irgsp1_rep	CDS	6764225	6764395	.	-	1	Parent=Os03t0227900-00
Chr03	irgsp1_rep	CDS	6764009	6764138	.	-	1	Parent=Os03t0227900-00
Chr03	irgsp1_rep	CDS	6763706	6763915	.	-	0	Parent=Os03t0227900-00
Chr03	irgsp1_rep	CDS	6763177	6763287	.	-	0	Parent=Os03t0227900-00
Chr03	irgsp1_rep	three_prime_UTR	6763115	6763176	.	-	.	Parent=Os03t0227900-00
Chr03	irgsp1_rep	mRNA	6776463	6778596	.	-	.	ID=Os03t0228200-01;Name=Os03t0228200-01;Locus_id=Os03g0228200;Note=Conserved hypothetical protein.;Transcript_evidence=AK059414 (DDBJ%2C Best hit);ORF_evidence=Q8L654 (UniProt);NIAS_FLcDNA=001-027-D04;Expression=AK059414;TENOR=Os03t0228200-01;KEGG=Os03t0228200-01
Chr03	irgsp1_rep	five_prime_UTR	6778501	6778596	.	-	.	Parent=Os03t0228200-01
Chr03	irgsp1_rep	five_prime_UTR	6777672	6777783	.	-	.	Parent=Os03t0228200-01
Chr03	irgsp1_rep	CDS	6777024	6777671	.	-	0	Parent=Os03t0228200-01
Chr03	irgsp1_rep	CDS	6776670	6776921	.	-	0	Parent=Os03t0228200-01
Chr03	irgsp1_rep	three_prime_UTR	6776463	6776669	.	-	.	Parent=Os03t0228200-01
Chr03	irgsp1_rep	mRNA	6782702	6785978	.	+	.	ID=Os03t0228400-01;Name=Os03t0228400-01;Locus_id=Os03g0228400;Note=Similar to Adapter-related protein complex 3 sigma 2 subunit (Sigma-adaptin 3b) (AP-3 complex sigma-3B subunit) (Sigma-3B-adaptin).;Transcript_evidence=AK103703 (DDBJ%2C Best hit);ORF_evidence=B4FA26 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: intracellular protein transport (GO:0006886),Biological Process: protein transport (GO:0015031),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: membrane coat (GO:0030117),Molecular Function: protein transporter activity (GO:0008565);InterPro=Clathrin adaptor complex%2C small chain (IPR000804),Longin-like (IPR011012),Adaptor protein complex%2C sigma subunit (IPR016635),AP complex%2C mu/sigma subunit (IPR022775);NIAS_FLcDNA=J033136N08;Expression=AK103703;TENOR=Os03t0228400-01;KEGG=Os03t0228400-01
Chr03	irgsp1_rep	five_prime_UTR	6782702	6782963	.	+	.	Parent=Os03t0228400-01
Chr03	irgsp1_rep	five_prime_UTR	6783421	6783478	.	+	.	Parent=Os03t0228400-01
Chr03	irgsp1_rep	CDS	6783479	6783547	.	+	0	Parent=Os03t0228400-01
Chr03	irgsp1_rep	CDS	6783722	6783764	.	+	0	Parent=Os03t0228400-01
Chr03	irgsp1_rep	CDS	6783855	6783916	.	+	2	Parent=Os03t0228400-01
Chr03	irgsp1_rep	CDS	6784285	6784381	.	+	0	Parent=Os03t0228400-01
Chr03	irgsp1_rep	CDS	6784886	6784956	.	+	2	Parent=Os03t0228400-01
Chr03	irgsp1_rep	CDS	6785370	6785461	.	+	0	Parent=Os03t0228400-01
Chr03	irgsp1_rep	CDS	6785546	6785612	.	+	1	Parent=Os03t0228400-01
Chr03	irgsp1_rep	three_prime_UTR	6785613	6785978	.	+	.	Parent=Os03t0228400-01
Chr03	irgsp1_rep	mRNA	6786712	6790137	.	+	.	ID=Os03t0228500-01;Name=Os03t0228500-01;Locus_id=Os03g0228500;Note=Conserved hypothetical protein.;Transcript_evidence=AK101799 (DDBJ%2C Best hit);ORF_evidence=B8AJL5 (UniProt);NIAS_FLcDNA=J033066F19;Expression=AK101799;TENOR=Os03t0228500-01;KEGG=Os03t0228500-01
Chr03	irgsp1_rep	five_prime_UTR	6786712	6786886	.	+	.	Parent=Os03t0228500-01
Chr03	irgsp1_rep	CDS	6786887	6787012	.	+	0	Parent=Os03t0228500-01
Chr03	irgsp1_rep	CDS	6789312	6789427	.	+	0	Parent=Os03t0228500-01
Chr03	irgsp1_rep	CDS	6789533	6789941	.	+	1	Parent=Os03t0228500-01
Chr03	irgsp1_rep	three_prime_UTR	6789942	6790137	.	+	.	Parent=Os03t0228500-01
Chr03	irgsp1_rep	mRNA	6804619	6808346	.	-	.	ID=Os03t0228800-01;Name=Os03t0228800-01;Locus_id=Os03g0228800;RAP-DB Gene Symbol Synonym(s)=OsBRR1;RAP-DB Gene Name Synonym(s)=blast resistance-related gene;Note=Leucine-rich repeat receptor-like kinase%2C Rice blast resistance;Transcript_evidence=AK121286;ORF_evidence=Q10PM6;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=Leucine-rich repeat domain superfamily (IPR032675),Protein kinase-like domain superfamily (IPR011009),Leucine-rich repeat-containing N-terminal%2C plant-type (IPR013210),Protein kinase domain (IPR000719),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat (IPR001611),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J023108P09;Manual Curation=November 2%2C 2020;Literature_PMID=19468748;Expression=AK121286;TENOR=Os03t0228800-01;KEGG=Os03t0228800-01
Chr03	irgsp1_rep	five_prime_UTR	6808313	6808346	.	-	.	Parent=Os03t0228800-01
Chr03	irgsp1_rep	CDS	6805729	6808312	.	-	0	Parent=Os03t0228800-01
Chr03	irgsp1_rep	CDS	6804875	6805314	.	-	2	Parent=Os03t0228800-01
Chr03	irgsp1_rep	three_prime_UTR	6804619	6804874	.	-	.	Parent=Os03t0228800-01
Chr03	irgsp1_rep	mRNA	6805727	6806290	.	+	.	ID=Os03t0228901-00;Name=Os03t0228901-00;Locus_id=Os03g0228901;Note=Hypothetical protein.;Transcript_evidence=EU951884 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0228901-00
Chr03	irgsp1_rep	CDS	6805727	6806224	.	+	0	Parent=Os03t0228901-00
Chr03	irgsp1_rep	three_prime_UTR	6806225	6806290	.	+	.	Parent=Os03t0228901-00
Chr03	irgsp1_rep	mRNA	6814731	6817574	.	+	.	ID=Os03t0229000-01;Name=Os03t0229000-01;Locus_id=Os03g0229000;Note=Conserved hypothetical protein.;Transcript_evidence=AK241228 (DDBJ%2C Best hit);ORF_evidence=NP_001173326.1 (RefSeq);NIAS_FLcDNA=J065127B04;TENOR=Os03t0229000-01;KEGG=Os03t0229000-01
Chr03	irgsp1_rep	five_prime_UTR	6814731	6814816	.	+	.	Parent=Os03t0229000-01
Chr03	irgsp1_rep	CDS	6814817	6815167	.	+	0	Parent=Os03t0229000-01
Chr03	irgsp1_rep	three_prime_UTR	6815168	6817574	.	+	.	Parent=Os03t0229000-01
Chr03	irgsp1_rep	mRNA	6826703	6832274	.	-	.	ID=Os03t0229100-00;Name=Os03t0229100-00;Locus_id=Os03g0229100;Oryzabase Gene Symbol Synonym(s)=OsbHLH019;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 019;Note=Similar to Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=AK364345 (DDBJ);ORF_evidence=Q8LSP3 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);Oryzabase=15310;TENOR=Os03t0229100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	6832153	6832274	.	-	.	Parent=Os03t0229100-00
Chr03	irgsp1_rep	CDS	6831952	6832152	.	-	0	Parent=Os03t0229100-00
Chr03	irgsp1_rep	CDS	6827194	6827446	.	-	0	Parent=Os03t0229100-00
Chr03	irgsp1_rep	CDS	6826703	6827109	.	-	2	Parent=Os03t0229100-00
Chr03	irgsp1_rep	mRNA	6854085	6856064	.	-	.	ID=Os03t0229500-00;Name=Os03t0229500-00;Locus_id=Os03g0229500;Oryzabase Gene Name Synonym(s)=MATE efflux family protein;Note=Similar to MATE efflux family protein%2C expressed.;Transcript_evidence=EU955386 (DDBJ);ORF_evidence=Q8LSP4 (UniProt);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);Oryzabase=22537;TENOR=Os03t0229500-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	6855927	6856064	.	-	.	Parent=Os03t0229500-00
Chr03	irgsp1_rep	CDS	6854118	6855926	.	-	0	Parent=Os03t0229500-00
Chr03	irgsp1_rep	three_prime_UTR	6854085	6854117	.	-	.	Parent=Os03t0229500-00
Chr03	irgsp1_rep	mRNA	6859922	6862489	.	-	.	ID=Os03t0229551-01;Name=Os03t0229551-01;Locus_id=Os03g0229551;Note=Hypothetical gene.;Transcript_evidence=AK288696 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090060O14;TENOR=Os03t0229551-01;KEGG=Os03t0229551-01
Chr03	irgsp1_rep	five_prime_UTR	6861918	6862489	.	-	.	Parent=Os03t0229551-01
Chr03	irgsp1_rep	CDS	6861618	6861917	.	-	0	Parent=Os03t0229551-01
Chr03	irgsp1_rep	three_prime_UTR	6859922	6861617	.	-	.	Parent=Os03t0229551-01
Chr03	irgsp1_rep	mRNA	6863023	6871173	.	-	.	ID=Os03t0229575-01;Name=Os03t0229575-01;Locus_id=Os03g0229575;Note=Hypothetical gene.;Transcript_evidence=AK318573 (DDBJ%2C Best hit);ORF_evidence=NP_001173328.1 (RefSeq);NIAS_FLcDNA=J090044A16;TENOR=Os03t0229575-01;KEGG=Os03t0229575-01
Chr03	irgsp1_rep	five_prime_UTR	6871060	6871173	.	-	.	Parent=Os03t0229575-01
Chr03	irgsp1_rep	five_prime_UTR	6865268	6865485	.	-	.	Parent=Os03t0229575-01
Chr03	irgsp1_rep	five_prime_UTR	6864030	6865225	.	-	.	Parent=Os03t0229575-01
Chr03	irgsp1_rep	CDS	6863760	6864029	.	-	0	Parent=Os03t0229575-01
Chr03	irgsp1_rep	three_prime_UTR	6863023	6863759	.	-	.	Parent=Os03t0229575-01
Chr03	irgsp1_rep	mRNA	6871825	6875383	.	-	.	ID=Os03t0229600-01;Name=Os03t0229600-01;Locus_id=Os03g0229600;Note=Similar to Maf-like protein CV_0124.;Transcript_evidence=AK072434 (DDBJ%2C Best hit);ORF_evidence=B6TNZ3 (UniProt);GO=Cellular Component: cytoplasm (GO:0005737);InterPro=Maf-like protein (IPR003697);NIAS_FLcDNA=J023099I05;TENOR=Os03t0229600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	6875307	6875383	.	-	.	Parent=Os03t0229600-01
Chr03	irgsp1_rep	CDS	6875283	6875306	.	-	0	Parent=Os03t0229600-01
Chr03	irgsp1_rep	CDS	6875124	6875195	.	-	0	Parent=Os03t0229600-01
Chr03	irgsp1_rep	CDS	6874856	6875002	.	-	0	Parent=Os03t0229600-01
Chr03	irgsp1_rep	three_prime_UTR	6873295	6874855	.	-	.	Parent=Os03t0229600-01
Chr03	irgsp1_rep	three_prime_UTR	6873110	6873201	.	-	.	Parent=Os03t0229600-01
Chr03	irgsp1_rep	three_prime_UTR	6872441	6872482	.	-	.	Parent=Os03t0229600-01
Chr03	irgsp1_rep	three_prime_UTR	6872231	6872311	.	-	.	Parent=Os03t0229600-01
Chr03	irgsp1_rep	three_prime_UTR	6871825	6872129	.	-	.	Parent=Os03t0229600-01
Chr03	irgsp1_rep	mRNA	6876093	6876874	.	+	.	ID=Os03t0229801-01;Name=Os03t0229801-01;Locus_id=Os03g0229801;Note=Conserved hypothetical protein.;Transcript_evidence=AK242025 (DDBJ%2C Best hit);ORF_evidence=Q7FA02 (UniProt);NIAS_FLcDNA=J075112L09;TENOR=Os03t0229801-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	6876093	6876583	.	+	.	Parent=Os03t0229801-01
Chr03	irgsp1_rep	CDS	6876584	6876754	.	+	0	Parent=Os03t0229801-01
Chr03	irgsp1_rep	three_prime_UTR	6876755	6876874	.	+	.	Parent=Os03t0229801-01
Chr03	irgsp1_rep	mRNA	6880218	6880905	.	+	.	ID=Os03t0230000-01;Name=Os03t0230000-01;Locus_id=Os03g0230000;Note=Non-protein coding transcript.;Transcript_evidence=AK105124 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-101-D08;TENOR=Os03t0230000-01
Chr03	irgsp1_rep	exon	6880218	6880905	.	+	.	Parent=Os03t0230000-01
Chr03	irgsp1_rep	mRNA	6895178	6898348	.	+	.	ID=Os03t0230300-01;Name=Os03t0230300-01;Locus_id=Os03g0230300;RAP-DB Gene Symbol Synonym(s)=OsSRO1c;RAP-DB Gene Name Synonym(s)=SRO protein 1c;CGSNL Gene Symbol=BOC1;CGSNL Gene Name=BROWNING OF CALLUS1;Oryzabase Gene Symbol Synonym(s)=OsSRO1c%2C SRO1c%2C OsBOC1;Oryzabase Gene Name Synonym(s)=SRO protein 1c%2C SIMILAR to RCD1 c%2C BROWNING OF CALLUS 1;Note=Homologue of SRO (similar to RCD one)%2C Regulation of stomatal closure%2C Abiotic stress response;Transcript_evidence=NM_001055991.1.;ORF_evidence=Q10PL7;GO=Molecular Function: NAD+ ADP-ribosyltransferase activity (GO:0003950);InterPro=Poly(ADP-ribose) polymerase%2C catalytic domain (IPR012317),RST domain of plant C-terminal (IPR022003);NIAS_FLcDNA=J033089O13;Manual Curation=September 25%2C 2015;Literature_PMID=23202132,24337801;Oryzabase=11662;Expression=AK102303;TENOR=Os03t0230300-01;KEGG=Os03t0230300-01
Chr03	irgsp1_rep	five_prime_UTR	6895178	6895269	.	+	.	Parent=Os03t0230300-01
Chr03	irgsp1_rep	CDS	6895270	6896171	.	+	0	Parent=Os03t0230300-01
Chr03	irgsp1_rep	CDS	6896502	6896749	.	+	1	Parent=Os03t0230300-01
Chr03	irgsp1_rep	CDS	6896831	6896973	.	+	2	Parent=Os03t0230300-01
Chr03	irgsp1_rep	CDS	6897911	6898009	.	+	0	Parent=Os03t0230300-01
Chr03	irgsp1_rep	three_prime_UTR	6898010	6898348	.	+	.	Parent=Os03t0230300-01
Chr03	irgsp1_rep	mRNA	6898096	6898355	.	+	.	ID=Os03t0230300-02;Name=Os03t0230300-02;Locus_id=Os03g0230300;CGSNL Gene Symbol=BOC1;CGSNL Gene Name=BROWNING OF CALLUS1;Oryzabase Gene Symbol Synonym(s)=OsSRO1c%2C SRO1c%2C OsBOC1;Oryzabase Gene Name Synonym(s)=SRO protein 1c%2C SIMILAR to RCD1 c%2C BROWNING OF CALLUS 1;Note=Non-protein coding transcript.;Transcript_evidence=AK058934 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-009-E09;Oryzabase=11662;TENOR=Os03t0230300-02
Chr03	irgsp1_rep	exon	6898096	6898355	.	+	.	Parent=Os03t0230300-02
Chr03	irgsp1_rep	mRNA	6902118	6907409	.	+	.	ID=Os03t0230500-01;Name=Os03t0230500-01;Locus_id=Os03g0230500;RAP-DB Gene Symbol Synonym(s)=DSM3%2C DSM3/OsITPK2%2C OsITL1%2C OsITPK2;RAP-DB Gene Name Synonym(s)=3%2C 4-trisphosphate 5/6-kinase 2%2C DROUGHT- AND SALT-SENSITIVE MUTANT 3%2C drought- and salt-hypersensitive mutant 3%2C inositol 1;CGSNL Gene Symbol=DSM3;CGSNL Gene Name=DROUGHT- AND SALT-SENSITIVE MUTANT 3;Oryzabase Gene Symbol Synonym(s)=OsITPK2%2C ITPK2%2C OsDSM3%2C OsITP5/6K-2%2C OsITL1;Oryzabase Gene Name Synonym(s)=inositol 1%2C 3%2C 4-trisphosphate 5/6-kinase 2%2C drought- and salt-sensitive mutant 3;Note=Inositol 1%2C3%2C4-trisphosphate 5/6-kinase%2C Drought and salt tolerance%2C Negative regulator of osmotic stress signaling;Transcript_evidence=AK100971,AY323825 (Zhongzuo93);ORF_evidence=Q10PL5;GO=Biological Process: inositol trisphosphate metabolic process (GO:0032957),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: ATP binding (GO:0005524),Molecular Function: inositol tetrakisphosphate 1-kinase activity (GO:0047325),Molecular Function: inositol-1%2C3%2C4-trisphosphate 6-kinase activity (GO:0052725),Molecular Function: inositol-1%2C3%2C4-trisphosphate 5-kinase activity (GO:0052726),Cellular Component: intracellular (GO:0005622);InterPro=Inositol-tetrakisphosphate 1-kinase (IPR008656);NIAS_FLcDNA=J023143C13;Manual Curation=May 8%2C 2017;Literature_PMID=22038091,18421420;Oryzabase=11437;Expression=AK100971;TENOR=Os03t0230500-01;KEGG=Os03t0230500-01 (EC:2.7.1.134, EC:2.7.1.159);Subcellular location=endoplasmic reticulum (GO:0005783)
Chr03	irgsp1_rep	five_prime_UTR	6902118	6902359	.	+	.	Parent=Os03t0230500-01
Chr03	irgsp1_rep	CDS	6902360	6902547	.	+	0	Parent=Os03t0230500-01
Chr03	irgsp1_rep	CDS	6903962	6904043	.	+	1	Parent=Os03t0230500-01
Chr03	irgsp1_rep	CDS	6904230	6904262	.	+	0	Parent=Os03t0230500-01
Chr03	irgsp1_rep	CDS	6904562	6904682	.	+	0	Parent=Os03t0230500-01
Chr03	irgsp1_rep	CDS	6905453	6905545	.	+	2	Parent=Os03t0230500-01
Chr03	irgsp1_rep	CDS	6905832	6905951	.	+	2	Parent=Os03t0230500-01
Chr03	irgsp1_rep	CDS	6906051	6906227	.	+	2	Parent=Os03t0230500-01
Chr03	irgsp1_rep	CDS	6906512	6906567	.	+	2	Parent=Os03t0230500-01
Chr03	irgsp1_rep	CDS	6906640	6906724	.	+	0	Parent=Os03t0230500-01
Chr03	irgsp1_rep	CDS	6907021	6907115	.	+	2	Parent=Os03t0230500-01
Chr03	irgsp1_rep	three_prime_UTR	6907116	6907409	.	+	.	Parent=Os03t0230500-01
Chr03	irgsp1_rep	mRNA	6931709	6932134	.	+	.	ID=Os03t0231000-00;Name=Os03t0231000-00;Locus_id=Os03g0231000;CGSNL Gene Symbol=HOX19;CGSNL Gene Name=HOMEOBOX GENE 19;Oryzabase Gene Symbol Synonym(s)=Oshox19%2C OsHox19;Oryzabase Gene Name Synonym(s)=rice homeobox gene 19%2C Homeobox-leucine zipper protein HOX19%2C Homeodomain transcription factor HOX19%2C HD-ZIP protein HOX19;Note=Conserved hypothetical protein.;Transcript_evidence=AY554031 (DDBJ%2C Best hit);ORF_evidence=A3AFR6 (UniProt);Oryzabase=8455;TENOR=Os03t0231000-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	6931709	6931730	.	+	.	Parent=Os03t0231000-00
Chr03	irgsp1_rep	CDS	6931731	6932134	.	+	0	Parent=Os03t0231000-00
Chr03	irgsp1_rep	mRNA	6933005	6933836	.	+	.	ID=Os03t0231150-00;Name=Os03t0231150-00;Locus_id=Os03g0231150;Note=Similar to Hox19 (Fragment).;Transcript_evidence=CU406260 (DDBJ%2C Best hit);ORF_evidence=Q6Q7D4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Leucine zipper%2C homeobox-associated (IPR003106);TENOR=Os03t0231150-00;KEGG=Os03t0231150-00
Chr03	irgsp1_rep	CDS	6933005	6933328	.	+	0	Parent=Os03t0231150-00
Chr03	irgsp1_rep	three_prime_UTR	6933329	6933836	.	+	.	Parent=Os03t0231150-00
Chr03	irgsp1_rep	mRNA	6943194	6943974	.	+	.	ID=Os03t0231400-01;Name=Os03t0231400-01;Locus_id=Os03g0231400;Note=Hypothetical protein.;Transcript_evidence=AK099954 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013124D06;TENOR=Os03t0231400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	6943194	6943195	.	+	.	Parent=Os03t0231400-01
Chr03	irgsp1_rep	CDS	6943196	6943477	.	+	0	Parent=Os03t0231400-01
Chr03	irgsp1_rep	three_prime_UTR	6943478	6943974	.	+	.	Parent=Os03t0231400-01
Chr03	irgsp1_rep	mRNA	6948035	6950951	.	+	.	ID=Os03t0231600-01;Name=Os03t0231600-01;Locus_id=Os03g0231600;Note=Similar to Branched-chain-amino-acid aminotransferase 3%2C chloroplast precursor (EC 2.6.1.42) (Atbcat-3).;Transcript_evidence=AK120579 (DDBJ%2C Best hit),AK105963 (DDBJ%2C Best hit);ORF_evidence=A2XE78 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: branched chain family amino acid metabolic process (GO:0009081),Molecular Function: catalytic activity (GO:0003824),Molecular Function: branched-chain-amino-acid transaminase activity (GO:0004084);InterPro=Aminotransferase%2C class IV (IPR001544),Branched-chain amino acid aminotransferase II (IPR005786),Aminotransferase%2C class IV%2C conserved site (IPR018300);NIAS_FLcDNA=J013135J09,001-205-E04;TENOR=Os03t0231600-01
Chr03	irgsp1_rep	five_prime_UTR	6948035	6948152	.	+	.	Parent=Os03t0231600-01
Chr03	irgsp1_rep	CDS	6948153	6948293	.	+	0	Parent=Os03t0231600-01
Chr03	irgsp1_rep	CDS	6948458	6948528	.	+	0	Parent=Os03t0231600-01
Chr03	irgsp1_rep	CDS	6948665	6948845	.	+	1	Parent=Os03t0231600-01
Chr03	irgsp1_rep	CDS	6948969	6949151	.	+	0	Parent=Os03t0231600-01
Chr03	irgsp1_rep	CDS	6949261	6949392	.	+	0	Parent=Os03t0231600-01
Chr03	irgsp1_rep	CDS	6949494	6949592	.	+	0	Parent=Os03t0231600-01
Chr03	irgsp1_rep	CDS	6949889	6950101	.	+	0	Parent=Os03t0231600-01
Chr03	irgsp1_rep	CDS	6950254	6950366	.	+	0	Parent=Os03t0231600-01
Chr03	irgsp1_rep	CDS	6950467	6950581	.	+	1	Parent=Os03t0231600-01
Chr03	irgsp1_rep	three_prime_UTR	6950582	6950951	.	+	.	Parent=Os03t0231600-01
Chr03	irgsp1_rep	mRNA	6948411	6950589	.	-	.	ID=Os03t0231650-00;Name=Os03t0231650-00;Locus_id=Os03g0231650;Note=Hypothetical protein.;Transcript_evidence=tplb0043l14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0231650-00
Chr03	irgsp1_rep	five_prime_UTR	6950489	6950589	.	-	.	Parent=Os03t0231650-00
Chr03	irgsp1_rep	CDS	6950471	6950488	.	-	0	Parent=Os03t0231650-00
Chr03	irgsp1_rep	CDS	6950264	6950373	.	-	0	Parent=Os03t0231650-00
Chr03	irgsp1_rep	CDS	6949873	6950114	.	-	1	Parent=Os03t0231650-00
Chr03	irgsp1_rep	CDS	6949500	6949582	.	-	2	Parent=Os03t0231650-00
Chr03	irgsp1_rep	three_prime_UTR	6949492	6949499	.	-	.	Parent=Os03t0231650-00
Chr03	irgsp1_rep	three_prime_UTR	6949260	6949390	.	-	.	Parent=Os03t0231650-00
Chr03	irgsp1_rep	three_prime_UTR	6948946	6949150	.	-	.	Parent=Os03t0231650-00
Chr03	irgsp1_rep	three_prime_UTR	6948651	6948820	.	-	.	Parent=Os03t0231650-00
Chr03	irgsp1_rep	three_prime_UTR	6948411	6948516	.	-	.	Parent=Os03t0231650-00
Chr03	irgsp1_rep	mRNA	6952710	6957390	.	-	.	ID=Os03t0231700-01;Name=Os03t0231700-01;Locus_id=Os03g0231700;Note=Similar to squalene monooxygenase.;Transcript_evidence=AK068401 (DDBJ%2C Best hit);ORF_evidence=B6U6N2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: integral to membrane (GO:0016021),Molecular Function: squalene monooxygenase activity (GO:0004506),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Aromatic-ring hydroxylase-like (IPR003042),FAD dependent oxidoreductase (IPR006076),Squalene epoxidase (IPR013698);NIAS_FLcDNA=J013149F23;Expression=AK068401;TENOR=Os03t0231700-01;KEGG=Os03t0231700-01 (EC:1.14.99.7)
Chr03	irgsp1_rep	five_prime_UTR	6956082	6957390	.	-	.	Parent=Os03t0231700-01
Chr03	irgsp1_rep	CDS	6955851	6956081	.	-	0	Parent=Os03t0231700-01
Chr03	irgsp1_rep	CDS	6954998	6955109	.	-	0	Parent=Os03t0231700-01
Chr03	irgsp1_rep	CDS	6954756	6954930	.	-	2	Parent=Os03t0231700-01
Chr03	irgsp1_rep	CDS	6954303	6954471	.	-	1	Parent=Os03t0231700-01
Chr03	irgsp1_rep	CDS	6953981	6954199	.	-	0	Parent=Os03t0231700-01
Chr03	irgsp1_rep	CDS	6953623	6953898	.	-	0	Parent=Os03t0231700-01
Chr03	irgsp1_rep	CDS	6953252	6953530	.	-	0	Parent=Os03t0231700-01
Chr03	irgsp1_rep	CDS	6952980	6953087	.	-	0	Parent=Os03t0231700-01
Chr03	irgsp1_rep	three_prime_UTR	6952710	6952979	.	-	.	Parent=Os03t0231700-01
Chr03	irgsp1_rep	mRNA	6950861	6956156	.	-	.	ID=Os03t0231700-02;Name=Os03t0231700-02;Locus_id=Os03g0231700;Note=Similar to Squalene monooxygenase 2 (EC 1.14.99.7).;Transcript_evidence=AK073426 (DDBJ%2C Best hit);ORF_evidence=B6U6N2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: integral to membrane (GO:0016021),Molecular Function: squalene monooxygenase activity (GO:0004506),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Aromatic-ring hydroxylase-like (IPR003042),FAD dependent oxidoreductase (IPR006076),Squalene epoxidase (IPR013698);NIAS_FLcDNA=J033045D18;Expression=AK073426;TENOR=Os03t0231700-02;KEGG=Os03t0231700-02 (EC:1.14.99.7)
Chr03	irgsp1_rep	five_prime_UTR	6956082	6956156	.	-	.	Parent=Os03t0231700-02
Chr03	irgsp1_rep	CDS	6955851	6956081	.	-	0	Parent=Os03t0231700-02
Chr03	irgsp1_rep	CDS	6954998	6955109	.	-	0	Parent=Os03t0231700-02
Chr03	irgsp1_rep	CDS	6954756	6954930	.	-	2	Parent=Os03t0231700-02
Chr03	irgsp1_rep	CDS	6954303	6954471	.	-	1	Parent=Os03t0231700-02
Chr03	irgsp1_rep	CDS	6953981	6954199	.	-	0	Parent=Os03t0231700-02
Chr03	irgsp1_rep	CDS	6953623	6953898	.	-	0	Parent=Os03t0231700-02
Chr03	irgsp1_rep	CDS	6953252	6953530	.	-	0	Parent=Os03t0231700-02
Chr03	irgsp1_rep	CDS	6952984	6953087	.	-	0	Parent=Os03t0231700-02
Chr03	irgsp1_rep	CDS	6951374	6951383	.	-	1	Parent=Os03t0231700-02
Chr03	irgsp1_rep	three_prime_UTR	6950861	6951373	.	-	.	Parent=Os03t0231700-02
Chr03	irgsp1_rep	mRNA	6952982	6956081	.	+	.	ID=Os03t0231750-00;Name=Os03t0231750-00;Locus_id=Os03g0231750;Note=Hypothetical protein.;Transcript_evidence=tplb0059f06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0231750-00
Chr03	irgsp1_rep	five_prime_UTR	6952982	6953092	.	+	.	Parent=Os03t0231750-00
Chr03	irgsp1_rep	five_prime_UTR	6953261	6953516	.	+	.	Parent=Os03t0231750-00
Chr03	irgsp1_rep	five_prime_UTR	6953610	6953885	.	+	.	Parent=Os03t0231750-00
Chr03	irgsp1_rep	five_prime_UTR	6953966	6954209	.	+	.	Parent=Os03t0231750-00
Chr03	irgsp1_rep	five_prime_UTR	6954313	6954483	.	+	.	Parent=Os03t0231750-00
Chr03	irgsp1_rep	five_prime_UTR	6954766	6954930	.	+	.	Parent=Os03t0231750-00
Chr03	irgsp1_rep	five_prime_UTR	6954998	6955091	.	+	.	Parent=Os03t0231750-00
Chr03	irgsp1_rep	CDS	6955092	6955099	.	+	0	Parent=Os03t0231750-00
Chr03	irgsp1_rep	CDS	6955847	6956081	.	+	1	Parent=Os03t0231750-00
Chr03	irgsp1_rep	mRNA	6957671	6962492	.	-	.	ID=Os03t0231800-02;Name=Os03t0231800-02;Locus_id=Os03g0231800;Note=Similar to Squalene monooxygenase 1 (EC 1.14.99.7).;Transcript_evidence=AK065032 (DDBJ%2C Best hit),AK098895 (DDBJ%2C Best hit);ORF_evidence=B6U6N2 (UniProt);NIAS_FLcDNA=J013001H02,J013001P20;Expression=AK065032;TENOR=Os03t0231800-02;KEGG=Os03t0231800-02 (EC:1.14.99.7)
Chr03	irgsp1_rep	five_prime_UTR	6962329	6962492	.	-	.	Parent=Os03t0231800-02
Chr03	irgsp1_rep	CDS	6962074	6962328	.	-	0	Parent=Os03t0231800-02
Chr03	irgsp1_rep	CDS	6959997	6960108	.	-	0	Parent=Os03t0231800-02
Chr03	irgsp1_rep	CDS	6959716	6959890	.	-	2	Parent=Os03t0231800-02
Chr03	irgsp1_rep	CDS	6959266	6959434	.	-	1	Parent=Os03t0231800-02
Chr03	irgsp1_rep	CDS	6958968	6959186	.	-	0	Parent=Os03t0231800-02
Chr03	irgsp1_rep	CDS	6958601	6958876	.	-	0	Parent=Os03t0231800-02
Chr03	irgsp1_rep	CDS	6958237	6958515	.	-	0	Parent=Os03t0231800-02
Chr03	irgsp1_rep	CDS	6957947	6958054	.	-	0	Parent=Os03t0231800-02
Chr03	irgsp1_rep	three_prime_UTR	6957671	6957946	.	-	.	Parent=Os03t0231800-02
Chr03	irgsp1_rep	mRNA	6957677	6959386	.	-	.	ID=Os03t0231800-03;Name=Os03t0231800-03;Locus_id=Os03g0231800;Note=Similar to squalene monooxygenase.;Transcript_evidence=AK061945 (DDBJ%2C Best hit);ORF_evidence=B6U6N2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: integral to membrane (GO:0016021),Molecular Function: squalene monooxygenase activity (GO:0004506),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Squalene epoxidase (IPR013698);NIAS_FLcDNA=001-042-E03;Expression=AK061945;TENOR=Os03t0231800-03;KEGG=Os03t0231800-03 (EC:1.14.99.7)
Chr03	irgsp1_rep	five_prime_UTR	6959386	6959386	.	-	.	Parent=Os03t0231800-03
Chr03	irgsp1_rep	CDS	6959266	6959385	.	-	0	Parent=Os03t0231800-03
Chr03	irgsp1_rep	CDS	6958968	6959186	.	-	0	Parent=Os03t0231800-03
Chr03	irgsp1_rep	CDS	6958601	6958876	.	-	0	Parent=Os03t0231800-03
Chr03	irgsp1_rep	CDS	6958237	6958515	.	-	0	Parent=Os03t0231800-03
Chr03	irgsp1_rep	CDS	6957947	6958054	.	-	0	Parent=Os03t0231800-03
Chr03	irgsp1_rep	three_prime_UTR	6957677	6957946	.	-	.	Parent=Os03t0231800-03
Chr03	irgsp1_rep	mRNA	6957949	6962502	.	+	.	ID=Os03t0231850-00;Name=Os03t0231850-00;Locus_id=Os03g0231850;Note=Hypothetical protein.;Transcript_evidence=tplb0059f06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0231850-00
Chr03	irgsp1_rep	five_prime_UTR	6957949	6958059	.	+	.	Parent=Os03t0231850-00
Chr03	irgsp1_rep	five_prime_UTR	6958246	6958517	.	+	.	Parent=Os03t0231850-00
Chr03	irgsp1_rep	five_prime_UTR	6958595	6958878	.	+	.	Parent=Os03t0231850-00
Chr03	irgsp1_rep	five_prime_UTR	6958973	6959184	.	+	.	Parent=Os03t0231850-00
Chr03	irgsp1_rep	five_prime_UTR	6959264	6959434	.	+	.	Parent=Os03t0231850-00
Chr03	irgsp1_rep	five_prime_UTR	6959716	6959899	.	+	.	Parent=Os03t0231850-00
Chr03	irgsp1_rep	five_prime_UTR	6960004	6960112	.	+	.	Parent=Os03t0231850-00
Chr03	irgsp1_rep	five_prime_UTR	6962083	6962125	.	+	.	Parent=Os03t0231850-00
Chr03	irgsp1_rep	CDS	6962126	6962341	.	+	0	Parent=Os03t0231850-00
Chr03	irgsp1_rep	three_prime_UTR	6962342	6962502	.	+	.	Parent=Os03t0231850-00
Chr03	irgsp1_rep	mRNA	6974763	6978108	.	-	.	ID=Os03t0231900-01;Name=Os03t0231900-01;Locus_id=Os03g0231900;Note=Conserved hypothetical protein.;Transcript_evidence=AK105780 (DDBJ%2C Best hit);ORF_evidence=Q10PK0 (UniProt);NIAS_FLcDNA=001-202-G03;Expression=AK105780;TENOR=Os03t0231900-01;KEGG=Os03t0231900-01
Chr03	irgsp1_rep	five_prime_UTR	6978079	6978108	.	-	.	Parent=Os03t0231900-01
Chr03	irgsp1_rep	CDS	6977723	6978078	.	-	0	Parent=Os03t0231900-01
Chr03	irgsp1_rep	CDS	6977566	6977569	.	-	1	Parent=Os03t0231900-01
Chr03	irgsp1_rep	three_prime_UTR	6977504	6977565	.	-	.	Parent=Os03t0231900-01
Chr03	irgsp1_rep	three_prime_UTR	6974763	6975368	.	-	.	Parent=Os03t0231900-01
Chr03	irgsp1_rep	mRNA	6980640	6982645	.	-	.	ID=Os03t0231950-01;Name=Os03t0231950-01;Locus_id=Os03g0231950;Oryzabase Gene Symbol Synonym(s)=OsbHLH088;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 088;Note=Similar to Helix-loop-helix DNA-binding domain containing protein%2C expressed.;Transcript_evidence=AK242003 (DDBJ%2C Best hit);ORF_evidence=Q10PJ7 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J075103H14;Oryzabase=15375;TENOR=Os03t0231950-01;KEGG=Os03t0231950-01
Chr03	irgsp1_rep	five_prime_UTR	6982601	6982645	.	-	.	Parent=Os03t0231950-01
Chr03	irgsp1_rep	CDS	6982353	6982524	.	-	0	Parent=Os03t0231950-01
Chr03	irgsp1_rep	CDS	6982116	6982210	.	-	2	Parent=Os03t0231950-01
Chr03	irgsp1_rep	CDS	6981888	6982034	.	-	0	Parent=Os03t0231950-01
Chr03	irgsp1_rep	CDS	6981740	6981805	.	-	0	Parent=Os03t0231950-01
Chr03	irgsp1_rep	CDS	6981586	6981654	.	-	0	Parent=Os03t0231950-01
Chr03	irgsp1_rep	CDS	6981417	6981479	.	-	0	Parent=Os03t0231950-01
Chr03	irgsp1_rep	CDS	6981138	6981326	.	-	0	Parent=Os03t0231950-01
Chr03	irgsp1_rep	CDS	6980964	6981057	.	-	0	Parent=Os03t0231950-01
Chr03	irgsp1_rep	CDS	6980858	6980877	.	-	2	Parent=Os03t0231950-01
Chr03	irgsp1_rep	three_prime_UTR	6980640	6980857	.	-	.	Parent=Os03t0231950-01
Chr03	irgsp1_rep	mRNA	6987949	6989544	.	-	.	ID=Os03t0232000-01;Name=Os03t0232000-01;Locus_id=Os03g0232000;Oryzabase Gene Symbol Synonym(s)=OsFbox136%2C Os_F0187;Oryzabase Gene Name Synonym(s)=F-box protein 136;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK068324 (DDBJ%2C Best hit);ORF_evidence=Q10PJ6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013151J01;Oryzabase=16927;Expression=AK068324;TENOR=Os03t0232000-01;KEGG=Os03t0232000-01
Chr03	irgsp1_rep	CDS	6988117	6989544	.	-	0	Parent=Os03t0232000-01
Chr03	irgsp1_rep	three_prime_UTR	6987949	6988116	.	-	.	Parent=Os03t0232000-01
Chr03	irgsp1_rep	mRNA	6988082	6989556	.	+	.	ID=Os03t0232050-00;Name=Os03t0232050-00;Locus_id=Os03g0232050;Note=Hypothetical protein.;Transcript_evidence=tplb0040l13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0232050-00
Chr03	irgsp1_rep	five_prime_UTR	6988082	6988260	.	+	.	Parent=Os03t0232050-00
Chr03	irgsp1_rep	CDS	6988261	6988827	.	+	0	Parent=Os03t0232050-00
Chr03	irgsp1_rep	three_prime_UTR	6988828	6989556	.	+	.	Parent=Os03t0232050-00
Chr03	irgsp1_rep	mRNA	6991327	6992249	.	+	.	ID=Os03t0232101-01;Name=Os03t0232101-01;Locus_id=Os03g0232101;Note=Conserved hypothetical protein.;Transcript_evidence=AK242199 (DDBJ%2C Best hit);ORF_evidence=NP_001173332.1 (RefSeq);NIAS_FLcDNA=J075166F13;TENOR=Os03t0232101-01;KEGG=Os03t0232101-01
Chr03	irgsp1_rep	five_prime_UTR	6991327	6991363	.	+	.	Parent=Os03t0232101-01
Chr03	irgsp1_rep	CDS	6991364	6991747	.	+	0	Parent=Os03t0232101-01
Chr03	irgsp1_rep	three_prime_UTR	6991748	6992249	.	+	.	Parent=Os03t0232101-01
Chr03	irgsp1_rep	mRNA	6992879	6997181	.	-	.	ID=Os03t0232200-01;Name=Os03t0232200-01;Locus_id=Os03g0232200;CGSNL Gene Symbol=PLT9;CGSNL Gene Name=PLETHORA 9;Oryzabase Gene Symbol Synonym(s)=OsPLT9%2C AP2/EREBP#137%2C AP2/EREBP137%2C OsANT;Oryzabase Gene Name Synonym(s)=Plethora 9%2C APETALA2/ethylene-responsive element binding protein 137;Note=Similar to BABY BOOM.;Transcript_evidence=AK106306 (DDBJ%2C Best hit);ORF_evidence=C1PH83 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=002-101-C10;Oryzabase=10473;Expression=AK106306;TENOR=Os03t0232200-01;KEGG=Os03t0232200-01
Chr03	irgsp1_rep	five_prime_UTR	6997001	6997181	.	-	.	Parent=Os03t0232200-01
Chr03	irgsp1_rep	CDS	6996652	6997000	.	-	0	Parent=Os03t0232200-01
Chr03	irgsp1_rep	CDS	6996030	6996570	.	-	2	Parent=Os03t0232200-01
Chr03	irgsp1_rep	CDS	6995288	6995370	.	-	1	Parent=Os03t0232200-01
Chr03	irgsp1_rep	CDS	6995145	6995153	.	-	2	Parent=Os03t0232200-01
Chr03	irgsp1_rep	CDS	6994971	6995059	.	-	2	Parent=Os03t0232200-01
Chr03	irgsp1_rep	CDS	6994802	6994875	.	-	0	Parent=Os03t0232200-01
Chr03	irgsp1_rep	CDS	6994630	6994680	.	-	1	Parent=Os03t0232200-01
Chr03	irgsp1_rep	CDS	6994443	6994519	.	-	1	Parent=Os03t0232200-01
Chr03	irgsp1_rep	CDS	6993279	6993934	.	-	2	Parent=Os03t0232200-01
Chr03	irgsp1_rep	three_prime_UTR	6992879	6993278	.	-	.	Parent=Os03t0232200-01
Chr03	irgsp1_rep	mRNA	6996027	6996317	.	+	.	ID=Os03t0232250-00;Name=Os03t0232250-00;Locus_id=Os03g0232250;Note=Non-protein coding transcript.;Transcript_evidence=EU942577 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0232250-00
Chr03	irgsp1_rep	exon	6996027	6996317	.	+	.	Parent=Os03t0232250-00
Chr03	irgsp1_rep	mRNA	7018347	7019179	.	+	.	ID=Os03t0232400-00;Name=Os03t0232400-00;Locus_id=Os03g0232400;Note=Phytosulfokine family protein.;Transcript_evidence=CU406739 (DDBJ%2C Best hit);ORF_evidence=NP_001049467.2 (RefSeq);GO=Biological Process: cell proliferation (GO:0008283),Cellular Component: extracellular region (GO:0005576),Molecular Function: growth factor activity (GO:0008083);InterPro=Phytosulfokine (IPR009438);TENOR=Os03t0232400-00;KEGG=Os03t0232400-00
Chr03	irgsp1_rep	five_prime_UTR	7018347	7018412	.	+	.	Parent=Os03t0232400-00
Chr03	irgsp1_rep	CDS	7018413	7018529	.	+	0	Parent=Os03t0232400-00
Chr03	irgsp1_rep	CDS	7018653	7018841	.	+	0	Parent=Os03t0232400-00
Chr03	irgsp1_rep	three_prime_UTR	7018842	7019179	.	+	.	Parent=Os03t0232400-00
Chr03	irgsp1_rep	mRNA	7022844	7026172	.	+	.	ID=Os03t0232500-01;Name=Os03t0232500-01;Locus_id=Os03g0232500;Note=GTP-binding protein%2C HSR1-related domain containing protein.;Transcript_evidence=AK110980 (DDBJ%2C Best hit);ORF_evidence=NP_001151819.1 (RefSeq);GO=Biological Process: barrier septum formation (GO:0000917),Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=GTP-binding domain%2C HSR1-related (IPR002917),GTP-binding protein%2C ribosome biogenesis%2C YsxC (IPR019987);NIAS_FLcDNA=002-174-C08;Expression=AK110980;TENOR=Os03t0232500-01;KEGG=Os03t0232500-01
Chr03	irgsp1_rep	five_prime_UTR	7022844	7022902	.	+	.	Parent=Os03t0232500-01
Chr03	irgsp1_rep	CDS	7022903	7023398	.	+	0	Parent=Os03t0232500-01
Chr03	irgsp1_rep	CDS	7024200	7024269	.	+	2	Parent=Os03t0232500-01
Chr03	irgsp1_rep	CDS	7025143	7025305	.	+	1	Parent=Os03t0232500-01
Chr03	irgsp1_rep	CDS	7025418	7025645	.	+	0	Parent=Os03t0232500-01
Chr03	irgsp1_rep	three_prime_UTR	7025646	7025852	.	+	.	Parent=Os03t0232500-01
Chr03	irgsp1_rep	three_prime_UTR	7025940	7026172	.	+	.	Parent=Os03t0232500-01
Chr03	irgsp1_rep	mRNA	7029174	7031611	.	-	.	ID=Os03t0232600-01;Name=Os03t0232600-01;Locus_id=Os03g0232600;RAP-DB Gene Symbol Synonym(s)=ELF1%2C OsPUB31%2C OsPUB75%2C TUD1%2C OsTUD1;RAP-DB Gene Name Synonym(s)=ERECT LEAF1%2C erect leaf1%2C plant U-box-containing protein 75%2C U-box protein 75%2C Taihu Dwarf1;CGSNL Gene Symbol=ELF1;CGSNL Gene Name=ERECT LEAF 1;Oryzabase Gene Symbol Synonym(s)=OsPUB31%2C PUB31%2C OsPUB75%2C PUB75%2C TUD1%2C OsTUD1%2C DSG1;Oryzabase Gene Name Synonym(s)=ERECT LEAF1%2C erect leaf1%2C plant U-box-containing protein 75%2C U-box protein 75%2C Taihu Dwarf1%2C Dwarf and short grain 1;Note=U-Box E3 ubiquitin ligase%2C Regulation of brassinosteroid-mediated growth;Transcript_evidence=AK068218;ORF_evidence=Q10PI9;GO=Biological Process: protein ubiquitination (GO:0016567),Molecular Function: ubiquitin-protein transferase activity (GO:0004842),Molecular Function: binding (GO:0005488);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),U box domain (IPR003613),Armadillo-type fold (IPR016024),Armadillo-like helical (IPR011989);NIAS_FLcDNA=J013146E12;Manual Curation=November 19%2C 2015;Literature_PMID=24299927,23526892;Oryzabase=17788;Expression=AK068218;TENOR=Os03t0232600-01;KEGG=Os03t0232600-01
Chr03	irgsp1_rep	five_prime_UTR	7031121	7031611	.	-	.	Parent=Os03t0232600-01
Chr03	irgsp1_rep	CDS	7029741	7031120	.	-	0	Parent=Os03t0232600-01
Chr03	irgsp1_rep	three_prime_UTR	7029174	7029740	.	-	.	Parent=Os03t0232600-01
Chr03	irgsp1_rep	mRNA	7043271	7046128	.	-	.	ID=Os03t0232800-01;Name=Os03t0232800-01;Locus_id=Os03g0232800;Note=Similar to Lecithin:cholesterol acyltransferase family protein%2C expressed.;Transcript_evidence=AK072207 (DDBJ%2C Best hit);ORF_evidence=Q10PI6 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: O-acyltransferase activity (GO:0008374);InterPro=Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase (IPR003386);NIAS_FLcDNA=J013158G18;TENOR=Os03t0232800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	7046110	7046128	.	-	.	Parent=Os03t0232800-01
Chr03	irgsp1_rep	CDS	7045745	7046109	.	-	0	Parent=Os03t0232800-01
Chr03	irgsp1_rep	CDS	7043946	7044810	.	-	1	Parent=Os03t0232800-01
Chr03	irgsp1_rep	CDS	7043704	7043706	.	-	0	Parent=Os03t0232800-01
Chr03	irgsp1_rep	three_prime_UTR	7043271	7043703	.	-	.	Parent=Os03t0232800-01
Chr03	irgsp1_rep	mRNA	7043812	7046128	.	-	.	ID=Os03t0232800-02;Name=Os03t0232800-02;Locus_id=Os03g0232800;Note=Similar to Lecithin:cholesterol acyltransferase family protein%2C expressed.;Transcript_evidence=AK060669 (DDBJ%2C Best hit),AK121004 (DDBJ%2C Best hit);ORF_evidence=Q10PI6 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: O-acyltransferase activity (GO:0008374);InterPro=Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase (IPR003386);NIAS_FLcDNA=001-028-G03,J023045D13;Expression=AK060669;TENOR=Os03t0232800-02;KEGG=Os03t0232800-02
Chr03	irgsp1_rep	five_prime_UTR	7046110	7046128	.	-	.	Parent=Os03t0232800-02
Chr03	irgsp1_rep	CDS	7045745	7046109	.	-	0	Parent=Os03t0232800-02
Chr03	irgsp1_rep	CDS	7043871	7044810	.	-	1	Parent=Os03t0232800-02
Chr03	irgsp1_rep	three_prime_UTR	7043812	7043870	.	-	.	Parent=Os03t0232800-02
Chr03	irgsp1_rep	mRNA	7046913	7051263	.	-	.	ID=Os03t0232900-01;Name=Os03t0232900-01;Locus_id=Os03g0232900;Note=Hly-III related domain containing protein.;Transcript_evidence=AK072709 (DDBJ%2C Best hit);ORF_evidence=A6MH02 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Hly-III-related (IPR004254);NIAS_FLcDNA=J023138G24;Expression=AK072709;TENOR=Os03t0232900-01;KEGG=Os03t0232900-01
Chr03	irgsp1_rep	five_prime_UTR	7050801	7051263	.	-	.	Parent=Os03t0232900-01
Chr03	irgsp1_rep	CDS	7050568	7050800	.	-	0	Parent=Os03t0232900-01
Chr03	irgsp1_rep	CDS	7048467	7048791	.	-	1	Parent=Os03t0232900-01
Chr03	irgsp1_rep	CDS	7047186	7047839	.	-	0	Parent=Os03t0232900-01
Chr03	irgsp1_rep	three_prime_UTR	7046913	7047185	.	-	.	Parent=Os03t0232900-01
Chr03	irgsp1_rep	mRNA	7061772	7063303	.	+	.	ID=Os03t0233000-01;Name=Os03t0233000-01;Locus_id=Os03g0233000;Note=Protein of unknown function DUF607 family protein.;Transcript_evidence=AK069495 (DDBJ%2C Best hit);ORF_evidence=A2XE92 (UniProt);InterPro=Coiled-coil domain containing protein 109%2C C-terminal (IPR006769);NIAS_FLcDNA=J023021I18;Expression=AK069495;TENOR=Os03t0233000-01;KEGG=Os03t0233000-01
Chr03	irgsp1_rep	five_prime_UTR	7061772	7061917	.	+	.	Parent=Os03t0233000-01
Chr03	irgsp1_rep	CDS	7061918	7062457	.	+	0	Parent=Os03t0233000-01
Chr03	irgsp1_rep	CDS	7062562	7063074	.	+	0	Parent=Os03t0233000-01
Chr03	irgsp1_rep	three_prime_UTR	7063075	7063303	.	+	.	Parent=Os03t0233000-01
Chr03	irgsp1_rep	mRNA	7066551	7067714	.	-	.	ID=Os03t0233200-00;Name=Os03t0233200-00;Locus_id=Os03g0233200;Note=Similar to Thaumatin-like protein%3B 23251-22305.;Transcript_evidence=ab initio prediction;ORF_evidence=Q9C9Q0 (UniProt);InterPro=Thaumatin%2C pathogenesis-related (IPR001938);TENOR=Os03t0233200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	7067555	7067714	.	-	0	Parent=Os03t0233200-00
Chr03	irgsp1_rep	CDS	7066551	7067308	.	-	2	Parent=Os03t0233200-00
Chr03	irgsp1_rep	mRNA	7066564	7067291	.	+	.	ID=Os03t0233251-00;Name=Os03t0233251-00;Locus_id=Os03g0233251;Note=Hypothetical protein.;Transcript_evidence=EU967040 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0233251-00
Chr03	irgsp1_rep	five_prime_UTR	7066564	7066565	.	+	.	Parent=Os03t0233251-00
Chr03	irgsp1_rep	CDS	7066566	7067291	.	+	0	Parent=Os03t0233251-00
Chr03	irgsp1_rep	mRNA	7067985	7070574	.	-	.	ID=Os03t0233300-01;Name=Os03t0233300-01;Locus_id=Os03g0233300;RAP-DB Gene Symbol Synonym(s)=OsLysM-RLK2%2C OsLYK5%2C OsNFR5/OsRLK2;RAP-DB Gene Name Synonym(s)=LysM receptor-like kinase 2%2C LysM-type receptor-like kinase5;Oryzabase Gene Symbol Synonym(s)=OsLysM-RLK2%2C LysM-RLK2%2C OsLYK5%2C LYK5%2C OsNFR5%2C NFR5;Oryzabase Gene Name Synonym(s)=LysM receptor-like kinase 2%2C LysM-type receptor-like kinase5%2C Nod-Factor Receptor 5;Note=LysM receptor-like kinase%2C Arbuscular mycorrhizal (AM) symbiosis;Transcript_evidence=XM_015774288.1.;ORF_evidence=Q8S5X8;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine-threonine/tyrosine-protein kinase catalytic domain (IPR001245),Tyrosine-protein kinase%2C active site (IPR008266);Manual Curation=September 30%2C 2016;Literature_PMID=27519312;Oryzabase=10921;TENOR=Os03t0233300-00;KEGG=Os03t0233300-00 (EC:2.7.11.1)
Chr03	irgsp1_rep	five_prime_UTR	7070508	7070574	.	-	.	Parent=Os03t0233300-01
Chr03	irgsp1_rep	CDS	7068633	7070507	.	-	0	Parent=Os03t0233300-01
Chr03	irgsp1_rep	three_prime_UTR	7067985	7068632	.	-	.	Parent=Os03t0233300-01
Chr03	irgsp1_rep	mRNA	7074684	7078859	.	+	.	ID=Os03t0233500-01;Name=Os03t0233500-01;Locus_id=Os03g0233500;Note=Zinc finger%2C C6HC-type domain containing protein.;Transcript_evidence=AK073139 (DDBJ%2C Best hit);ORF_evidence=NP_567966.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C C6HC-type (IPR002867),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J033023K06;Expression=AK073139;TENOR=Os03t0233500-01;KEGG=Os03t0233500-01
Chr03	irgsp1_rep	five_prime_UTR	7074684	7074940	.	+	.	Parent=Os03t0233500-01
Chr03	irgsp1_rep	CDS	7074941	7075114	.	+	0	Parent=Os03t0233500-01
Chr03	irgsp1_rep	CDS	7075208	7075240	.	+	0	Parent=Os03t0233500-01
Chr03	irgsp1_rep	CDS	7075372	7075648	.	+	0	Parent=Os03t0233500-01
Chr03	irgsp1_rep	CDS	7076259	7076739	.	+	2	Parent=Os03t0233500-01
Chr03	irgsp1_rep	CDS	7077451	7077999	.	+	1	Parent=Os03t0233500-01
Chr03	irgsp1_rep	CDS	7078064	7078245	.	+	1	Parent=Os03t0233500-01
Chr03	irgsp1_rep	CDS	7078332	7078474	.	+	2	Parent=Os03t0233500-01
Chr03	irgsp1_rep	three_prime_UTR	7078475	7078859	.	+	.	Parent=Os03t0233500-01
Chr03	irgsp1_rep	mRNA	7082665	7084749	.	-	.	ID=Os03t0233700-00;Name=Os03t0233700-00;Locus_id=Os03g0233700;Note=Conserved hypothetical protein.;Transcript_evidence=AK071617 (DDBJ%2C Secondary hit);ORF_evidence=B9FV20 (UniProt);TENOR=Os03t0233700-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	7084603	7084749	.	-	.	Parent=Os03t0233700-00
Chr03	irgsp1_rep	five_prime_UTR	7084576	7084589	.	-	.	Parent=Os03t0233700-00
Chr03	irgsp1_rep	CDS	7084421	7084575	.	-	0	Parent=Os03t0233700-00
Chr03	irgsp1_rep	CDS	7083512	7083767	.	-	1	Parent=Os03t0233700-00
Chr03	irgsp1_rep	three_prime_UTR	7083384	7083511	.	-	.	Parent=Os03t0233700-00
Chr03	irgsp1_rep	three_prime_UTR	7082932	7083278	.	-	.	Parent=Os03t0233700-00
Chr03	irgsp1_rep	three_prime_UTR	7082665	7082887	.	-	.	Parent=Os03t0233700-00
Chr03	irgsp1_rep	mRNA	7090845	7092016	.	-	.	ID=Os03t0233750-00;Name=Os03t0233750-00;Locus_id=Os03g0233750;Note=Hypothetical gene.;Transcript_evidence=BT068520 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0233750-00;KEGG=Os03t0233750-00
Chr03	irgsp1_rep	five_prime_UTR	7092015	7092016	.	-	.	Parent=Os03t0233750-00
Chr03	irgsp1_rep	CDS	7091436	7092014	.	-	0	Parent=Os03t0233750-00
Chr03	irgsp1_rep	three_prime_UTR	7090845	7091435	.	-	.	Parent=Os03t0233750-00
Chr03	irgsp1_rep	mRNA	7088357	7092160	.	+	.	ID=Os03t0233800-01;Name=Os03t0233800-01;Locus_id=Os03g0233800;Note=Protein of unknown function DUF547 domain containing protein.;Transcript_evidence=AK072396 (DDBJ%2C Best hit);ORF_evidence=NP_001147902.1 (RefSeq);InterPro=Domain of unknown function DUF547 (IPR006869);NIAS_FLcDNA=J023081G15;Expression=AK072396;TENOR=Os03t0233800-01;KEGG=Os03t0233800-01
Chr03	irgsp1_rep	five_prime_UTR	7088357	7088392	.	+	.	Parent=Os03t0233800-01
Chr03	irgsp1_rep	five_prime_UTR	7088475	7088637	.	+	.	Parent=Os03t0233800-01
Chr03	irgsp1_rep	five_prime_UTR	7088773	7088839	.	+	.	Parent=Os03t0233800-01
Chr03	irgsp1_rep	CDS	7088840	7088899	.	+	0	Parent=Os03t0233800-01
Chr03	irgsp1_rep	CDS	7089189	7089272	.	+	0	Parent=Os03t0233800-01
Chr03	irgsp1_rep	CDS	7089615	7089731	.	+	0	Parent=Os03t0233800-01
Chr03	irgsp1_rep	CDS	7089843	7090280	.	+	0	Parent=Os03t0233800-01
Chr03	irgsp1_rep	CDS	7090397	7090803	.	+	0	Parent=Os03t0233800-01
Chr03	irgsp1_rep	CDS	7090879	7090978	.	+	1	Parent=Os03t0233800-01
Chr03	irgsp1_rep	CDS	7091058	7091114	.	+	0	Parent=Os03t0233800-01
Chr03	irgsp1_rep	CDS	7091215	7091301	.	+	0	Parent=Os03t0233800-01
Chr03	irgsp1_rep	CDS	7091564	7092052	.	+	0	Parent=Os03t0233800-01
Chr03	irgsp1_rep	three_prime_UTR	7092053	7092160	.	+	.	Parent=Os03t0233800-01
Chr03	irgsp1_rep	mRNA	7088573	7092494	.	+	.	ID=Os03t0233800-02;Name=Os03t0233800-02;Locus_id=Os03g0233800;Note=Protein of unknown function DUF547 domain containing protein.;Transcript_evidence=AK108855 (DDBJ%2C Best hit);ORF_evidence=NP_001147902.1 (RefSeq);InterPro=Domain of unknown function DUF547 (IPR006869);NIAS_FLcDNA=002-152-B01;Expression=AK108855;TENOR=Os03t0233800-02;KEGG=Os03t0233800-02
Chr03	irgsp1_rep	five_prime_UTR	7088573	7088637	.	+	.	Parent=Os03t0233800-02
Chr03	irgsp1_rep	five_prime_UTR	7088773	7088839	.	+	.	Parent=Os03t0233800-02
Chr03	irgsp1_rep	CDS	7088840	7088899	.	+	0	Parent=Os03t0233800-02
Chr03	irgsp1_rep	CDS	7089189	7089272	.	+	0	Parent=Os03t0233800-02
Chr03	irgsp1_rep	CDS	7089615	7089731	.	+	0	Parent=Os03t0233800-02
Chr03	irgsp1_rep	CDS	7089843	7090280	.	+	0	Parent=Os03t0233800-02
Chr03	irgsp1_rep	CDS	7090397	7090803	.	+	0	Parent=Os03t0233800-02
Chr03	irgsp1_rep	CDS	7090879	7090978	.	+	1	Parent=Os03t0233800-02
Chr03	irgsp1_rep	CDS	7091058	7091114	.	+	0	Parent=Os03t0233800-02
Chr03	irgsp1_rep	CDS	7091215	7091301	.	+	0	Parent=Os03t0233800-02
Chr03	irgsp1_rep	CDS	7091564	7092052	.	+	0	Parent=Os03t0233800-02
Chr03	irgsp1_rep	three_prime_UTR	7092053	7092494	.	+	.	Parent=Os03t0233800-02
Chr03	irgsp1_rep	mRNA	7092864	7093988	.	+	.	ID=Os03t0233900-01;Name=Os03t0233900-01;Locus_id=Os03g0233900;RAP-DB Gene Symbol Synonym(s)=Hb1%2C OsPgb1.1;RAP-DB Gene Name Synonym(s)=non-symbiotic hemoglobin 1%2C phytoglobin 1.1;CGSNL Gene Symbol=Hb1;CGSNL Gene Name=HEMOGLOBIN 1;Oryzabase Gene Symbol Synonym(s)=HB1%2C OsHB1%2C GLB1A%2C rHb1%2C ORYsa GLB1a%2C nsHb1%2C OsNSHB1%2C hb1%2C nsHb%2C OsPgb1.1%2C Pgb1.1;Oryzabase Gene Name Synonym(s)=Non-symbiotic hemoglobin 1%2C class 1 rice nonsymbiotic hemoglobin%2C class 1 nonsymbiotic hemoglobin%2C Non-legume hemoglobin%2C Phytogb1.1%2C phytoglobin 1.1;Note=Non-symbiotic hemoglobin%2C Phytoglobin%2C Response to low mineral nutrients and abiotic stresses;Transcript_evidence=AK064054;ORF_evidence=O04986;GO=Molecular Function: oxygen binding (GO:0019825),Molecular Function: heme binding (GO:0020037);InterPro=Globin-like superfamily (IPR009050),Globin/Protoglobin (IPR012292),Leghaemoglobin (IPR001032),Globin (IPR000971),Leghaemoglobin%2C iron-binding site (IPR019824);NIAS_FLcDNA=001-125-F02;Manual Curation=October 1%2C 2020;Literature_PMID=29044557,21966570;Oryzabase=7139;Expression=AK064054;TENOR=Os03t0233900-01;KEGG=Os03t0233900-01;Subcellular location=cytosol (GO:0005829),nucleus (GO:0005634)
Chr03	irgsp1_rep	five_prime_UTR	7092864	7092963	.	+	.	Parent=Os03t0233900-01
Chr03	irgsp1_rep	CDS	7092964	7093091	.	+	0	Parent=Os03t0233900-01
Chr03	irgsp1_rep	CDS	7093208	7093322	.	+	1	Parent=Os03t0233900-01
Chr03	irgsp1_rep	CDS	7093418	7093534	.	+	0	Parent=Os03t0233900-01
Chr03	irgsp1_rep	CDS	7093650	7093790	.	+	0	Parent=Os03t0233900-01
Chr03	irgsp1_rep	three_prime_UTR	7093791	7093988	.	+	.	Parent=Os03t0233900-01
Chr03	irgsp1_rep	mRNA	7096670	7097510	.	+	.	ID=Os03t0234000-00;Name=Os03t0234000-00;Locus_id=Os03g0234000;CGSNL Gene Symbol=Hb3;CGSNL Gene Name=HEMOGLOBIN 3;Oryzabase Gene Symbol Synonym(s)=HB3%2C OsNSHB3%2C NSHB3%2C OsPgb1.3%2C Pgb1.3;Oryzabase Gene Name Synonym(s)=non-symbiotic hemoglobin 3%2C Phytogb1.3%2C phytoglobin 1.3;Note=Non-symbiotic hemoglobin 3 (rHb3) (ORYsa GLB1c).;Transcript_evidence=Q94FT8 (UniProt);ORF_evidence=Q94FT8 (UniProt);GO=Biological Process: oxygen transport (GO:0015671),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxygen binding (GO:0019825),Molecular Function: heme binding (GO:0020037);InterPro=Globin%2C subset (IPR000971),Leghaemoglobin (IPR001032),Globin-like (IPR009050),Globin%2C structural domain (IPR012292),Leghaemoglobin%2C iron-binding site (IPR019824);Oryzabase=12414;TENOR=Os03t0234000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	7096670	7096803	.	+	0	Parent=Os03t0234000-00
Chr03	irgsp1_rep	CDS	7096954	7097068	.	+	1	Parent=Os03t0234000-00
Chr03	irgsp1_rep	CDS	7097162	7097278	.	+	0	Parent=Os03t0234000-00
Chr03	irgsp1_rep	CDS	7097367	7097510	.	+	0	Parent=Os03t0234000-00
Chr03	irgsp1_rep	mRNA	7100048	7101570	.	+	.	ID=Os03t0234100-01;Name=Os03t0234100-01;Locus_id=Os03g0234100;CGSNL Gene Symbol=Hb4;CGSNL Gene Name=HEMOGLOBIN 4;Oryzabase Gene Symbol Synonym(s)=OsHB4%2C HB4%2C OsNSHB4%2C NSHB4%2C OsPgb1.4%2C Pgb1.4;Oryzabase Gene Name Synonym(s)=non-symbiotic hemoglobin 4%2C Phytogb1.4%2C phytoglobin 1.4;Note=Similar to Non-symbiotic hemoglobin 4 (rHb4) (ORYsa GLB1d).;Transcript_evidence=AK240885 (DDBJ%2C Best hit);ORF_evidence=Q94FT7 (UniProt);GO=Biological Process: oxygen transport (GO:0015671),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxygen binding (GO:0019825),Molecular Function: heme binding (GO:0020037);InterPro=Globin%2C subset (IPR000971),Leghaemoglobin (IPR001032),Globin-like (IPR009050),Globin%2C structural domain (IPR012292),Leghaemoglobin%2C iron-binding site (IPR019824);NIAS_FLcDNA=J065029A17;Oryzabase=12415;TENOR=Os03t0234100-01;KEGG=Os03t0234100-01
Chr03	irgsp1_rep	five_prime_UTR	7100048	7100176	.	+	.	Parent=Os03t0234100-01
Chr03	irgsp1_rep	CDS	7100177	7100301	.	+	0	Parent=Os03t0234100-01
Chr03	irgsp1_rep	CDS	7100394	7100508	.	+	1	Parent=Os03t0234100-01
Chr03	irgsp1_rep	CDS	7100619	7100735	.	+	0	Parent=Os03t0234100-01
Chr03	irgsp1_rep	CDS	7101063	7101209	.	+	0	Parent=Os03t0234100-01
Chr03	irgsp1_rep	three_prime_UTR	7101210	7101570	.	+	.	Parent=Os03t0234100-01
Chr03	irgsp1_rep	mRNA	7102183	7104288	.	-	.	ID=Os03t0234200-01;Name=Os03t0234200-01;Locus_id=Os03g0234200;Oryzabase Gene Symbol Synonym(s)=ZIURP1%2C Ub-CEP52-1;Oryzabase Gene Name Synonym(s)=ubiquitin fused to CEP52 gene-1;Note=Similar to Ubiquitin fusion protein (Fragment).;Transcript_evidence=AK059011 (DDBJ%2C Best hit);ORF_evidence=A6N0G0 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L40e (IPR001975);NIAS_FLcDNA=001-020-H11;Oryzabase=12116;Expression=AK059011;TENOR=Os03t0234200-01;KEGG=Os03t0234200-01
Chr03	irgsp1_rep	five_prime_UTR	7104288	7104288	.	-	.	Parent=Os03t0234200-01
Chr03	irgsp1_rep	CDS	7104235	7104287	.	-	0	Parent=Os03t0234200-01
Chr03	irgsp1_rep	CDS	7102660	7102726	.	-	1	Parent=Os03t0234200-01
Chr03	irgsp1_rep	CDS	7102355	7102384	.	-	0	Parent=Os03t0234200-01
Chr03	irgsp1_rep	three_prime_UTR	7102183	7102354	.	-	.	Parent=Os03t0234200-01
Chr03	irgsp1_rep	mRNA	7102655	7104625	.	+	.	ID=Os03t0234350-00;Name=Os03t0234350-00;Locus_id=Os03g0234350;Note=Non-protein coding transcript.;Transcript_evidence=BT016508 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0234350-00
Chr03	irgsp1_rep	exon	7102655	7102728	.	+	.	Parent=Os03t0234350-00
Chr03	irgsp1_rep	exon	7104230	7104410	.	+	.	Parent=Os03t0234350-00
Chr03	irgsp1_rep	exon	7104505	7104625	.	+	.	Parent=Os03t0234350-00
Chr03	irgsp1_rep	mRNA	7107129	7108588	.	+	.	ID=Os03t0234500-01;Name=Os03t0234500-01;Locus_id=Os03g0234500;Oryzabase Gene Symbol Synonym(s)=prx37;Oryzabase Gene Name Synonym(s)=class III peroxidase 37;Note=Haem peroxidase%2C plant/fungal/bacterial family protein.;Transcript_evidence=AK241166 (DDBJ%2C Best hit);ORF_evidence=Q8S5Y4 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255);NIAS_FLcDNA=J065116J09;Oryzabase=14564;TENOR=Os03t0234500-01;KEGG=Os03t0234500-01
Chr03	irgsp1_rep	five_prime_UTR	7107129	7107252	.	+	.	Parent=Os03t0234500-01
Chr03	irgsp1_rep	CDS	7107253	7107471	.	+	0	Parent=Os03t0234500-01
Chr03	irgsp1_rep	CDS	7107558	7107749	.	+	0	Parent=Os03t0234500-01
Chr03	irgsp1_rep	CDS	7107847	7108440	.	+	0	Parent=Os03t0234500-01
Chr03	irgsp1_rep	three_prime_UTR	7108441	7108588	.	+	.	Parent=Os03t0234500-01
Chr03	irgsp1_rep	mRNA	7111305	7115133	.	-	.	ID=Os03t0234600-00;Name=Os03t0234600-00;Locus_id=Os03g0234600;Note=Hypothetical conserved gene.;Transcript_evidence=EU965445 (DDBJ);ORF_evidence=Q10PG9 (UniProt);TENOR=Os03t0234600-00;KEGG=Os03t0234600-00
Chr03	irgsp1_rep	five_prime_UTR	7115129	7115133	.	-	.	Parent=Os03t0234600-00
Chr03	irgsp1_rep	CDS	7114649	7115128	.	-	0	Parent=Os03t0234600-00
Chr03	irgsp1_rep	CDS	7114138	7114196	.	-	0	Parent=Os03t0234600-00
Chr03	irgsp1_rep	CDS	7113966	7114014	.	-	1	Parent=Os03t0234600-00
Chr03	irgsp1_rep	CDS	7113364	7113447	.	-	0	Parent=Os03t0234600-00
Chr03	irgsp1_rep	CDS	7112646	7112769	.	-	0	Parent=Os03t0234600-00
Chr03	irgsp1_rep	CDS	7111938	7111939	.	-	2	Parent=Os03t0234600-00
Chr03	irgsp1_rep	three_prime_UTR	7111866	7111937	.	-	.	Parent=Os03t0234600-00
Chr03	irgsp1_rep	three_prime_UTR	7111305	7111364	.	-	.	Parent=Os03t0234600-00
Chr03	irgsp1_rep	mRNA	7124925	7127129	.	-	.	ID=Os03t0234900-01;Name=Os03t0234900-01;Locus_id=Os03g0234900;Oryzabase Gene Symbol Synonym(s)=prx39;Oryzabase Gene Name Synonym(s)=class III peroxidase 39;Note=Similar to Peroxidase (EC 1.11.1.7).;Transcript_evidence=AK104936 (DDBJ%2C Best hit),AK068353 (DDBJ%2C Best hit);ORF_evidence=B4FKV6 (UniProt);NIAS_FLcDNA=001-105-G10,J013142D12;Oryzabase=14565;TENOR=Os03t0234900-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	7127019	7127129	.	-	.	Parent=Os03t0234900-01
Chr03	irgsp1_rep	CDS	7126797	7127018	.	-	0	Parent=Os03t0234900-01
Chr03	irgsp1_rep	CDS	7126504	7126695	.	-	0	Parent=Os03t0234900-01
Chr03	irgsp1_rep	CDS	7125757	7125922	.	-	0	Parent=Os03t0234900-01
Chr03	irgsp1_rep	CDS	7125014	7125435	.	-	2	Parent=Os03t0234900-01
Chr03	irgsp1_rep	three_prime_UTR	7124925	7125013	.	-	.	Parent=Os03t0234900-01
Chr03	irgsp1_rep	mRNA	7128273	7129609	.	-	.	ID=Os03t0235000-01;Name=Os03t0235000-01;Locus_id=Os03g0235000;CGSNL Gene Symbol=POXN;CGSNL Gene Name=PEROXIDASE N;Oryzabase Gene Symbol Synonym(s)=poxN%2C prx38%2C prxRPN%2C RPN%2C poxN/PRX38;Oryzabase Gene Name Synonym(s)=Peroxidase N%2C class III peroxidase 38;Note=Similar to Peroxidase.;Transcript_evidence=AK103019 (DDBJ%2C Best hit);ORF_evidence=Q43004 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793);NIAS_FLcDNA=J033116N23;Oryzabase=13038;Expression=AK103019;TENOR=Os03t0235000-01;KEGG=Os03t0235000-01 (EC:1.11.1.7)
Chr03	irgsp1_rep	five_prime_UTR	7129608	7129609	.	-	.	Parent=Os03t0235000-01
Chr03	irgsp1_rep	CDS	7129575	7129607	.	-	0	Parent=Os03t0235000-01
Chr03	irgsp1_rep	CDS	7129325	7129490	.	-	0	Parent=Os03t0235000-01
Chr03	irgsp1_rep	CDS	7128596	7129014	.	-	2	Parent=Os03t0235000-01
Chr03	irgsp1_rep	three_prime_UTR	7128273	7128595	.	-	.	Parent=Os03t0235000-01
Chr03	irgsp1_rep	mRNA	7132567	7135975	.	+	.	ID=Os03t0235100-01;Name=Os03t0235100-01;Locus_id=Os03g0235100;Note=Similar to Pg4.;Transcript_evidence=AK070766 (DDBJ%2C Best hit);ORF_evidence=Q5EXM1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=LisH dimerisation motif (IPR006594),CTLH%2C C-terminal LisH motif (IPR006595),Ran binding protein-like%2C CRA domain (IPR013144),LisH dimerisation motif%2C subgroup (IPR013720),Ran binding protein%2C CRA domain (IPR019589);NIAS_FLcDNA=J023073F07;Expression=AK070766;TENOR=Os03t0235100-01;KEGG=Os03t0235100-01
Chr03	irgsp1_rep	five_prime_UTR	7132567	7132789	.	+	.	Parent=Os03t0235100-01
Chr03	irgsp1_rep	CDS	7132790	7133012	.	+	0	Parent=Os03t0235100-01
Chr03	irgsp1_rep	CDS	7133121	7133227	.	+	2	Parent=Os03t0235100-01
Chr03	irgsp1_rep	CDS	7134617	7134748	.	+	0	Parent=Os03t0235100-01
Chr03	irgsp1_rep	CDS	7134891	7135047	.	+	0	Parent=Os03t0235100-01
Chr03	irgsp1_rep	CDS	7135607	7135728	.	+	2	Parent=Os03t0235100-01
Chr03	irgsp1_rep	three_prime_UTR	7135729	7135975	.	+	.	Parent=Os03t0235100-01
Chr03	irgsp1_rep	mRNA	7132617	7135981	.	+	.	ID=Os03t0235100-02;Name=Os03t0235100-02;Locus_id=Os03g0235100;Note=Similar to Pg4.;Transcript_evidence=AK060384 (DDBJ%2C Best hit);ORF_evidence=Q5EXM1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=LisH dimerisation motif (IPR006594),CTLH%2C C-terminal LisH motif (IPR006595),Ran binding protein-like%2C CRA domain (IPR013144),LisH dimerisation motif%2C subgroup (IPR013720),Ran binding protein%2C CRA domain (IPR019589);NIAS_FLcDNA=001-009-F04;Expression=AK060384;TENOR=Os03t0235100-02;KEGG=Os03t0235100-02
Chr03	irgsp1_rep	five_prime_UTR	7132617	7132789	.	+	.	Parent=Os03t0235100-02
Chr03	irgsp1_rep	CDS	7132790	7133012	.	+	0	Parent=Os03t0235100-02
Chr03	irgsp1_rep	CDS	7133121	7133227	.	+	2	Parent=Os03t0235100-02
Chr03	irgsp1_rep	CDS	7134617	7134748	.	+	0	Parent=Os03t0235100-02
Chr03	irgsp1_rep	CDS	7134891	7135047	.	+	0	Parent=Os03t0235100-02
Chr03	irgsp1_rep	CDS	7135607	7135728	.	+	2	Parent=Os03t0235100-02
Chr03	irgsp1_rep	three_prime_UTR	7135729	7135981	.	+	.	Parent=Os03t0235100-02
Chr03	irgsp1_rep	mRNA	7136651	7138895	.	+	.	ID=Os03t0235200-01;Name=Os03t0235200-01;Locus_id=Os03g0235200;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK073159 (DDBJ%2C Best hit);ORF_evidence=B8AJP0 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033003F09;Expression=AK073159;TENOR=Os03t0235200-01;KEGG=Os03t0235200-01
Chr03	irgsp1_rep	five_prime_UTR	7136651	7136651	.	+	.	Parent=Os03t0235200-01
Chr03	irgsp1_rep	CDS	7136652	7138577	.	+	0	Parent=Os03t0235200-01
Chr03	irgsp1_rep	three_prime_UTR	7138578	7138895	.	+	.	Parent=Os03t0235200-01
Chr03	irgsp1_rep	mRNA	7139074	7140886	.	-	.	ID=Os03t0235300-01;Name=Os03t0235300-01;Locus_id=Os03g0235300;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Similar to Peptide transporter PTR2.;Transcript_evidence=AK318551 (DDBJ%2C Best hit);ORF_evidence=B6TVK5 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),PTR2 family proton/oligopeptide symporter%2C conserved site (IPR018456);NIAS_FLcDNA=J075138M12;Oryzabase=23646;TENOR=Os03t0235300-01;KEGG=Os03t0235300-01
Chr03	irgsp1_rep	five_prime_UTR	7140886	7140886	.	-	.	Parent=Os03t0235300-01
Chr03	irgsp1_rep	CDS	7140536	7140885	.	-	0	Parent=Os03t0235300-01
Chr03	irgsp1_rep	CDS	7139976	7140063	.	-	1	Parent=Os03t0235300-01
Chr03	irgsp1_rep	CDS	7139753	7139878	.	-	0	Parent=Os03t0235300-01
Chr03	irgsp1_rep	three_prime_UTR	7139074	7139752	.	-	.	Parent=Os03t0235300-01
Chr03	irgsp1_rep	mRNA	7143619	7146865	.	-	.	ID=Os03t0235400-01;Name=Os03t0235400-01;Locus_id=Os03g0235400;Note=Hypothetical protein.;Transcript_evidence=AK070511 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023057E03;Expression=AK070511;TENOR=Os03t0235400-01;KEGG=Os03t0235400-01
Chr03	irgsp1_rep	five_prime_UTR	7146427	7146865	.	-	.	Parent=Os03t0235400-01
Chr03	irgsp1_rep	five_prime_UTR	7144187	7146312	.	-	.	Parent=Os03t0235400-01
Chr03	irgsp1_rep	CDS	7143944	7144186	.	-	0	Parent=Os03t0235400-01
Chr03	irgsp1_rep	three_prime_UTR	7143619	7143943	.	-	.	Parent=Os03t0235400-01
Chr03	irgsp1_rep	mRNA	7147366	7151263	.	-	.	ID=Os03t0235700-01;Name=Os03t0235700-01;Locus_id=Os03g0235700;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Similar to Peptide transporter 1.;Transcript_evidence=AK100552 (DDBJ%2C Best hit);ORF_evidence=B6TVK5 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),PTR2 family proton/oligopeptide symporter%2C conserved site (IPR018456);NIAS_FLcDNA=J023103K13;Oryzabase=23647;Expression=AK100552;TENOR=Os03t0235700-01;KEGG=Os03t0235700-01
Chr03	irgsp1_rep	five_prime_UTR	7151233	7151263	.	-	.	Parent=Os03t0235700-01
Chr03	irgsp1_rep	CDS	7151173	7151232	.	-	0	Parent=Os03t0235700-01
Chr03	irgsp1_rep	CDS	7150337	7150436	.	-	0	Parent=Os03t0235700-01
Chr03	irgsp1_rep	CDS	7149835	7150052	.	-	2	Parent=Os03t0235700-01
Chr03	irgsp1_rep	CDS	7148881	7149437	.	-	0	Parent=Os03t0235700-01
Chr03	irgsp1_rep	CDS	7147553	7148375	.	-	1	Parent=Os03t0235700-01
Chr03	irgsp1_rep	three_prime_UTR	7147366	7147552	.	-	.	Parent=Os03t0235700-01
Chr03	irgsp1_rep	mRNA	7163390	7168860	.	-	.	ID=Os03t0235900-01;Name=Os03t0235900-01;Locus_id=Os03g0235900;CGSNL Gene Symbol=NRT1;CGSNL Gene Name=NITRATE TRANSPORTER 1;Oryzabase Gene Symbol Synonym(s)=OsNRT1%2C OsNRT1%3B1%2C OsNRT1.1%2C OsNRT1.1a%2C OsNRT1.1b%2C NRT1.1%2C NRT1.1a%2C NRT1.1b%2C OsNPF8.9%2C NPF8.9%2C OsNRT1.1B;Oryzabase Gene Name Synonym(s)=nitrate transporter gene 1%2C NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 8.9;Note=Similar to Low affinity nitrate transporter NRT1.2.;Transcript_evidence=AK066920 (DDBJ%2C Best hit);ORF_evidence=Q9SPU1 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J013090P16;Oryzabase=6246;Expression=AK066920;TENOR=Os03t0235900-01;KEGG=Os03t0235900-01
Chr03	irgsp1_rep	five_prime_UTR	7168754	7168860	.	-	.	Parent=Os03t0235900-01
Chr03	irgsp1_rep	five_prime_UTR	7168227	7168356	.	-	.	Parent=Os03t0235900-01
Chr03	irgsp1_rep	five_prime_UTR	7167382	7167417	.	-	.	Parent=Os03t0235900-01
Chr03	irgsp1_rep	CDS	7167322	7167381	.	-	0	Parent=Os03t0235900-01
Chr03	irgsp1_rep	CDS	7166599	7166695	.	-	0	Parent=Os03t0235900-01
Chr03	irgsp1_rep	CDS	7166167	7166384	.	-	2	Parent=Os03t0235900-01
Chr03	irgsp1_rep	CDS	7165491	7165794	.	-	0	Parent=Os03t0235900-01
Chr03	irgsp1_rep	CDS	7165238	7165408	.	-	2	Parent=Os03t0235900-01
Chr03	irgsp1_rep	CDS	7164287	7164312	.	-	2	Parent=Os03t0235900-01
Chr03	irgsp1_rep	three_prime_UTR	7163390	7164286	.	-	.	Parent=Os03t0235900-01
Chr03	irgsp1_rep	mRNA	7170208	7170645	.	-	.	ID=Os03t0236050-00;Name=Os03t0236050-00;Locus_id=Os03g0236050;Note=Conserved hypothetical protein.;Transcript_evidence=AK062402 (DDBJ%2C Secondary hit);ORF_evidence=Q10PF7 (UniProt);TENOR=Os03t0236050-00
Chr03	irgsp1_rep	five_prime_UTR	7170644	7170645	.	-	.	Parent=Os03t0236050-00
Chr03	irgsp1_rep	CDS	7170532	7170643	.	-	0	Parent=Os03t0236050-00
Chr03	irgsp1_rep	CDS	7170299	7170513	.	-	2	Parent=Os03t0236050-00
Chr03	irgsp1_rep	three_prime_UTR	7170208	7170298	.	-	.	Parent=Os03t0236050-00
Chr03	irgsp1_rep	mRNA	7181080	7184036	.	+	.	ID=Os03t0236200-01;Name=Os03t0236200-01;Locus_id=Os03g0236200;RAP-DB Gene Symbol Synonym(s)=OsGAD3;RAP-DB Gene Name Synonym(s)=glutamate decarboxylase 3;CGSNL Gene Symbol=GAD3;CGSNL Gene Name=GLUTAMATE DECARBOXYLASE;Oryzabase Gene Symbol Synonym(s)=OsGAD3;Oryzabase Gene Name Synonym(s)=glutamate decarboxylase 3;Note=Glutamate decarboxylase;Transcript_evidence=AK071556;ORF_evidence=Q84U04;GO=Biological Process: glutamate metabolic process (GO:0006536),Biological Process: carboxylic acid metabolic process (GO:0019752),Molecular Function: catalytic activity (GO:0003824),Molecular Function: glutamate decarboxylase activity (GO:0004351),Molecular Function: carboxy-lyase activity (GO:0016831),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent transferase (IPR015424),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015421),Pyridoxal phosphate-dependent decarboxylase (IPR002129),Glutamate decarboxylase (IPR010107);NIAS_FLcDNA=J023101A16;Manual Curation=April 9%2C 2020;Literature_PMID=32180062;Oryzabase=7055;Expression=AK071556;TENOR=Os03t0236200-01;KEGG=Os03t0236200-01 (EC:4.1.1.15)
Chr03	irgsp1_rep	five_prime_UTR	7181080	7181275	.	+	.	Parent=Os03t0236200-01
Chr03	irgsp1_rep	CDS	7181276	7181361	.	+	0	Parent=Os03t0236200-01
Chr03	irgsp1_rep	CDS	7181474	7181678	.	+	1	Parent=Os03t0236200-01
Chr03	irgsp1_rep	CDS	7182331	7182746	.	+	0	Parent=Os03t0236200-01
Chr03	irgsp1_rep	CDS	7182833	7183139	.	+	1	Parent=Os03t0236200-01
Chr03	irgsp1_rep	CDS	7183230	7183694	.	+	0	Parent=Os03t0236200-01
Chr03	irgsp1_rep	three_prime_UTR	7183695	7184036	.	+	.	Parent=Os03t0236200-01
Chr03	irgsp1_rep	mRNA	7184393	7189221	.	+	.	ID=Os03t0236300-00;Name=Os03t0236300-00;Locus_id=Os03g0236300;Note=Similar to Myb-like DNA-binding domain containing protein%2C expressed.;Transcript_evidence=AK376836 (DDBJ);ORF_evidence=Q10PF5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);TENOR=Os03t0236300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	7184393	7184874	.	+	0	Parent=Os03t0236300-00
Chr03	irgsp1_rep	CDS	7188654	7189221	.	+	1	Parent=Os03t0236300-00
Chr03	irgsp1_rep	mRNA	7198978	7200126	.	-	.	ID=Os03t0236675-00;Name=Os03t0236675-00;Locus_id=Os03g0236675;Note=Protein of unknown function DUF1677%2C Oryza sativa domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10PF3 (UniProt);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);TENOR=Os03t0236675-00
Chr03	irgsp1_rep	CDS	7198978	7200126	.	-	0	Parent=Os03t0236675-00
Chr03	irgsp1_rep	mRNA	7209408	7210040	.	+	.	ID=Os03t0236800-00;Name=Os03t0236800-00;Locus_id=Os03g0236800;Note=Conserved hypothetical protein.;Transcript_evidence=BT055603 (DDBJ);ORF_evidence=Q8H014 (UniProt);TENOR=Os03t0236800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	7209408	7209413	.	+	.	Parent=Os03t0236800-00
Chr03	irgsp1_rep	CDS	7209414	7210040	.	+	0	Parent=Os03t0236800-00
Chr03	irgsp1_rep	mRNA	7211426	7212113	.	+	.	ID=Os03t0236900-00;Name=Os03t0236900-00;Locus_id=Os03g0236900;Oryzabase Gene Symbol Synonym(s)=OsAPC6%2C APC6;Oryzabase Gene Name Synonym(s)=Oryza sativa anaphase-promoting complex 6%2C anaphase-promoting complex 6%2C anaphase promoting complex/Cyclosome subunit APC6%2C ANAPHASE PROMOTING COMPLEX 6;Note=Similar to TPR Domain containing protein%2C expressed.;Transcript_evidence=EU957984 (DDBJ);ORF_evidence=Q10PF0 (UniProt);Oryzabase=10207;TENOR=Os03t0236900-00;KEGG=Os03t0236900-00
Chr03	irgsp1_rep	five_prime_UTR	7211426	7211428	.	+	.	Parent=Os03t0236900-00
Chr03	irgsp1_rep	CDS	7211429	7212076	.	+	0	Parent=Os03t0236900-00
Chr03	irgsp1_rep	three_prime_UTR	7212077	7212113	.	+	.	Parent=Os03t0236900-00
Chr03	irgsp1_rep	mRNA	7212586	7221029	.	+	.	ID=Os03t0236966-00;Name=Os03t0236966-00;Locus_id=Os03g0236966;Oryzabase Gene Symbol Synonym(s)=OsAPC6%2C APC6;Oryzabase Gene Name Synonym(s)=Oryza sativa anaphase-promoting complex 6%2C anaphase-promoting complex 6%2C anaphase promoting complex/Cyclosome subunit APC6%2C ANAPHASE PROMOTING COMPLEX 6;Note=Similar to TPR Domain containing protein%2C expressed.;Transcript_evidence=BT041498 (DDBJ);ORF_evidence=Q10PF0 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide TPR-1 (IPR001440),Tetratricopeptide TPR-3 (IPR011716),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);Oryzabase=10207;TENOR=Os03t0236966-00;KEGG=Os03t0236966-00
Chr03	irgsp1_rep	five_prime_UTR	7212586	7212590	.	+	.	Parent=Os03t0236966-00
Chr03	irgsp1_rep	CDS	7212591	7212956	.	+	0	Parent=Os03t0236966-00
Chr03	irgsp1_rep	CDS	7213824	7213958	.	+	0	Parent=Os03t0236966-00
Chr03	irgsp1_rep	CDS	7214041	7214114	.	+	0	Parent=Os03t0236966-00
Chr03	irgsp1_rep	CDS	7214468	7214507	.	+	1	Parent=Os03t0236966-00
Chr03	irgsp1_rep	CDS	7214686	7214731	.	+	0	Parent=Os03t0236966-00
Chr03	irgsp1_rep	CDS	7214906	7214985	.	+	2	Parent=Os03t0236966-00
Chr03	irgsp1_rep	CDS	7215093	7215268	.	+	0	Parent=Os03t0236966-00
Chr03	irgsp1_rep	CDS	7215356	7215481	.	+	1	Parent=Os03t0236966-00
Chr03	irgsp1_rep	CDS	7215864	7215938	.	+	1	Parent=Os03t0236966-00
Chr03	irgsp1_rep	CDS	7216643	7216768	.	+	1	Parent=Os03t0236966-00
Chr03	irgsp1_rep	CDS	7217323	7217392	.	+	1	Parent=Os03t0236966-00
Chr03	irgsp1_rep	CDS	7217770	7217852	.	+	0	Parent=Os03t0236966-00
Chr03	irgsp1_rep	CDS	7218724	7218837	.	+	1	Parent=Os03t0236966-00
Chr03	irgsp1_rep	CDS	7219392	7219491	.	+	1	Parent=Os03t0236966-00
Chr03	irgsp1_rep	CDS	7220133	7220168	.	+	0	Parent=Os03t0236966-00
Chr03	irgsp1_rep	CDS	7220809	7220901	.	+	0	Parent=Os03t0236966-00
Chr03	irgsp1_rep	three_prime_UTR	7220902	7221029	.	+	.	Parent=Os03t0236966-00
Chr03	irgsp1_rep	mRNA	7212592	7221230	.	-	.	ID=Os03t0236983-01;Name=Os03t0236983-01;Locus_id=Os03g0236983;Note=Hypothetical gene.;Transcript_evidence=AK243414 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100066C08;TENOR=Os03t0236983-01
Chr03	irgsp1_rep	five_prime_UTR	7221107	7221230	.	-	.	Parent=Os03t0236983-01
Chr03	irgsp1_rep	five_prime_UTR	7218724	7218796	.	-	.	Parent=Os03t0236983-01
Chr03	irgsp1_rep	five_prime_UTR	7217770	7217852	.	-	.	Parent=Os03t0236983-01
Chr03	irgsp1_rep	five_prime_UTR	7217323	7217392	.	-	.	Parent=Os03t0236983-01
Chr03	irgsp1_rep	five_prime_UTR	7216643	7216768	.	-	.	Parent=Os03t0236983-01
Chr03	irgsp1_rep	five_prime_UTR	7215864	7215938	.	-	.	Parent=Os03t0236983-01
Chr03	irgsp1_rep	five_prime_UTR	7215356	7215481	.	-	.	Parent=Os03t0236983-01
Chr03	irgsp1_rep	five_prime_UTR	7215093	7215268	.	-	.	Parent=Os03t0236983-01
Chr03	irgsp1_rep	five_prime_UTR	7214906	7214985	.	-	.	Parent=Os03t0236983-01
Chr03	irgsp1_rep	five_prime_UTR	7214686	7214731	.	-	.	Parent=Os03t0236983-01
Chr03	irgsp1_rep	five_prime_UTR	7214468	7214507	.	-	.	Parent=Os03t0236983-01
Chr03	irgsp1_rep	five_prime_UTR	7214041	7214114	.	-	.	Parent=Os03t0236983-01
Chr03	irgsp1_rep	five_prime_UTR	7213950	7213958	.	-	.	Parent=Os03t0236983-01
Chr03	irgsp1_rep	CDS	7213824	7213949	.	-	0	Parent=Os03t0236983-01
Chr03	irgsp1_rep	CDS	7212592	7212956	.	-	0	Parent=Os03t0236983-01
Chr03	irgsp1_rep	mRNA	7223777	7228021	.	+	.	ID=Os03t0237000-01;Name=Os03t0237000-01;Locus_id=Os03g0237000;Note=Nonaspanin (TM9SF) family protein.;Transcript_evidence=AK064791 (DDBJ%2C Best hit);ORF_evidence=NP_001151315.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Nonaspanin (TM9SF) (IPR004240);NIAS_FLcDNA=J013000C08;Expression=AK064791;TENOR=Os03t0237000-01;KEGG=Os03t0237000-01
Chr03	irgsp1_rep	five_prime_UTR	7223777	7223962	.	+	.	Parent=Os03t0237000-01
Chr03	irgsp1_rep	CDS	7223963	7224123	.	+	0	Parent=Os03t0237000-01
Chr03	irgsp1_rep	CDS	7224539	7224579	.	+	1	Parent=Os03t0237000-01
Chr03	irgsp1_rep	CDS	7224664	7225249	.	+	2	Parent=Os03t0237000-01
Chr03	irgsp1_rep	CDS	7225815	7225952	.	+	1	Parent=Os03t0237000-01
Chr03	irgsp1_rep	CDS	7226080	7226236	.	+	1	Parent=Os03t0237000-01
Chr03	irgsp1_rep	CDS	7226356	7226840	.	+	0	Parent=Os03t0237000-01
Chr03	irgsp1_rep	CDS	7227375	7227594	.	+	1	Parent=Os03t0237000-01
Chr03	irgsp1_rep	three_prime_UTR	7227595	7228021	.	+	.	Parent=Os03t0237000-01
Chr03	irgsp1_rep	mRNA	7229093	7231670	.	+	.	ID=Os03t0237100-01;Name=Os03t0237100-01;Locus_id=Os03g0237100;CGSNL Gene Symbol=DMAS1;CGSNL Gene Name=DEOXYMUGINEIC ACID SYNTHASE 1;Oryzabase Gene Symbol Synonym(s)=OsDMAS1;Oryzabase Gene Name Synonym(s)=sativa deoxymugineic acid synthase1%2C Deoxymugineic acid synthase1%2C Deoxymugineic acid synthase 1%2C deoxymugineic acid synthase1;Note=Similar to NADPH-dependent codeinone reductase (EC 1.1.1.247).;Transcript_evidence=AK073738 (DDBJ%2C Best hit);ORF_evidence=Q0PCF5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldo/keto reductase (IPR001395),Aldo/keto reductase%2C conserved site (IPR018170),Aldo/keto reductase subgroup (IPR020471),NADP-dependent oxidoreductase domain (IPR023210);NIAS_FLcDNA=J033064L19;Oryzabase=8312;Expression=AK073738;TENOR=Os03t0237100-01;KEGG=Os03t0237100-01 (EC:1.1.1.247)
Chr03	irgsp1_rep	five_prime_UTR	7229093	7229131	.	+	.	Parent=Os03t0237100-01
Chr03	irgsp1_rep	CDS	7229132	7229439	.	+	0	Parent=Os03t0237100-01
Chr03	irgsp1_rep	CDS	7230523	7230766	.	+	1	Parent=Os03t0237100-01
Chr03	irgsp1_rep	CDS	7230893	7231069	.	+	0	Parent=Os03t0237100-01
Chr03	irgsp1_rep	CDS	7231155	7231382	.	+	0	Parent=Os03t0237100-01
Chr03	irgsp1_rep	three_prime_UTR	7231383	7231670	.	+	.	Parent=Os03t0237100-01
Chr03	irgsp1_rep	mRNA	7229093	7231307	.	-	.	ID=Os03t0237201-00;Name=Os03t0237201-00;Locus_id=Os03g0237201;Note=Hypothetical protein.;Transcript_evidence=AK375890 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0237201-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	7231292	7231307	.	-	.	Parent=Os03t0237201-00
Chr03	irgsp1_rep	CDS	7230821	7231291	.	-	0	Parent=Os03t0237201-00
Chr03	irgsp1_rep	three_prime_UTR	7230473	7230820	.	-	.	Parent=Os03t0237201-00
Chr03	irgsp1_rep	three_prime_UTR	7229093	7229469	.	-	.	Parent=Os03t0237201-00
Chr03	irgsp1_rep	mRNA	7237162	7241445	.	-	.	ID=Os03t0237250-01;Name=Os03t0237250-01;Locus_id=Os03g0237250;RAP-DB Gene Symbol Synonym(s)=OsIDD14%2C LPA1;RAP-DB Gene Name Synonym(s)=indeterminate domain 14%2C Loose Plant Architecture1;Oryzabase Gene Symbol Synonym(s)=OsIDD14%2C LPA1;Oryzabase Gene Name Synonym(s)=indeterminate domain 14%2C Loose Plant Architecture1;Note=Indeterminate domain protein%2C Shoot gravitropism;Transcript_evidence=JQ681528 (Zhongxian3037);ORF_evidence=L7PBL4;GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger C2H2-type/integrase DNA-binding domain (IPR013087),Zinc finger%2C C2H2-like (IPR015880),Zinc finger%2C C2H2 (IPR007087);Manual Curation=April 24%2C 2014;Literature_PMID=23124325;Oryzabase=13161;TENOR=Os03t0237250-00
Chr03	irgsp1_rep	five_prime_UTR	7241181	7241445	.	-	.	Parent=Os03t0237250-01
Chr03	irgsp1_rep	CDS	7241003	7241180	.	-	0	Parent=Os03t0237250-01
Chr03	irgsp1_rep	CDS	7240453	7240921	.	-	2	Parent=Os03t0237250-01
Chr03	irgsp1_rep	CDS	7237316	7237985	.	-	1	Parent=Os03t0237250-01
Chr03	irgsp1_rep	three_prime_UTR	7237162	7237315	.	-	.	Parent=Os03t0237250-01
Chr03	irgsp1_rep	mRNA	7240577	7240923	.	+	.	ID=Os03t0237267-00;Name=Os03t0237267-00;Locus_id=Os03g0237267;Note=Hypothetical protein.;Transcript_evidence=BT086922 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0237267-00
Chr03	irgsp1_rep	five_prime_UTR	7240577	7240605	.	+	.	Parent=Os03t0237267-00
Chr03	irgsp1_rep	CDS	7240606	7240679	.	+	0	Parent=Os03t0237267-00
Chr03	irgsp1_rep	CDS	7240748	7240923	.	+	1	Parent=Os03t0237267-00
Chr03	irgsp1_rep	mRNA	7272999	7273747	.	-	.	ID=Os03t0237401-00;Name=Os03t0237401-00;Locus_id=Os03g0237401;Note=Similar to GAGA-binding protein.;Transcript_evidence=FP098331 (DDBJ);ORF_evidence=NP_001152265.1 (RefSeq);InterPro=GAGA binding-like (IPR010409);TENOR=Os03t0237401-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	7273661	7273747	.	-	.	Parent=Os03t0237401-00
Chr03	irgsp1_rep	CDS	7273523	7273660	.	-	0	Parent=Os03t0237401-00
Chr03	irgsp1_rep	three_prime_UTR	7273497	7273522	.	-	.	Parent=Os03t0237401-00
Chr03	irgsp1_rep	three_prime_UTR	7272999	7273379	.	-	.	Parent=Os03t0237401-00
Chr03	irgsp1_rep	mRNA	7274601	7277422	.	+	.	ID=Os03t0237500-01;Name=Os03t0237500-01;Locus_id=Os03g0237500;Note=Similar to predicted protein.;Transcript_evidence=AK058844 (DDBJ%2C Best hit);ORF_evidence=Q10PE1 (UniProt);InterPro=Protein of unknown function DUF775 (IPR008493);NIAS_FLcDNA=001-004-F11;Expression=AK058844;TENOR=Os03t0237500-01;KEGG=Os03t0237500-01
Chr03	irgsp1_rep	five_prime_UTR	7274601	7274609	.	+	.	Parent=Os03t0237500-01
Chr03	irgsp1_rep	CDS	7274610	7275257	.	+	0	Parent=Os03t0237500-01
Chr03	irgsp1_rep	three_prime_UTR	7275258	7275265	.	+	.	Parent=Os03t0237500-01
Chr03	irgsp1_rep	three_prime_UTR	7277083	7277422	.	+	.	Parent=Os03t0237500-01
Chr03	irgsp1_rep	mRNA	7274609	7277364	.	+	.	ID=Os03t0237500-02;Name=Os03t0237500-02;Locus_id=Os03g0237500;Note=Protein of unknown function DUF775 family protein.;Transcript_evidence=AK068960 (DDBJ%2C Best hit);ORF_evidence=XP_003079806.1 (RefSeq);InterPro=Protein of unknown function DUF775 (IPR008493);NIAS_FLcDNA=J023003N17;Expression=AK068960;TENOR=Os03t0237500-02;KEGG=Os03t0237500-02
Chr03	irgsp1_rep	five_prime_UTR	7274609	7274609	.	+	.	Parent=Os03t0237500-02
Chr03	irgsp1_rep	CDS	7274610	7274856	.	+	0	Parent=Os03t0237500-02
Chr03	irgsp1_rep	CDS	7275052	7275257	.	+	2	Parent=Os03t0237500-02
Chr03	irgsp1_rep	three_prime_UTR	7275258	7275265	.	+	.	Parent=Os03t0237500-02
Chr03	irgsp1_rep	three_prime_UTR	7277083	7277364	.	+	.	Parent=Os03t0237500-02
Chr03	irgsp1_rep	mRNA	7279296	7284276	.	-	.	ID=Os03t0237600-01;Name=Os03t0237600-01;Locus_id=Os03g0237600;Note=Similar to ATMAP65-6%3B microtubule binding.;Transcript_evidence=AK066517 (DDBJ%2C Best hit);ORF_evidence=XP_002875099.1 (RefSeq);InterPro=Microtubule-associated protein%2C MAP65/ASE1-type (IPR007145);NIAS_FLcDNA=J013069B13;TENOR=Os03t0237600-01
Chr03	irgsp1_rep	five_prime_UTR	7283941	7284276	.	-	.	Parent=Os03t0237600-01
Chr03	irgsp1_rep	CDS	7283842	7283940	.	-	0	Parent=Os03t0237600-01
Chr03	irgsp1_rep	CDS	7282324	7282527	.	-	0	Parent=Os03t0237600-01
Chr03	irgsp1_rep	CDS	7281316	7281573	.	-	0	Parent=Os03t0237600-01
Chr03	irgsp1_rep	CDS	7280689	7280904	.	-	0	Parent=Os03t0237600-01
Chr03	irgsp1_rep	CDS	7280448	7280603	.	-	0	Parent=Os03t0237600-01
Chr03	irgsp1_rep	CDS	7280210	7280369	.	-	0	Parent=Os03t0237600-01
Chr03	irgsp1_rep	CDS	7279972	7280123	.	-	2	Parent=Os03t0237600-01
Chr03	irgsp1_rep	CDS	7279755	7279842	.	-	0	Parent=Os03t0237600-01
Chr03	irgsp1_rep	CDS	7279428	7279501	.	-	2	Parent=Os03t0237600-01
Chr03	irgsp1_rep	CDS	7279296	7279339	.	-	0	Parent=Os03t0237600-01
Chr03	irgsp1_rep	mRNA	7277370	7284233	.	-	.	ID=Os03t0237600-02;Name=Os03t0237600-02;Locus_id=Os03g0237600;Note=MAP65/ASE1 family protein.;Transcript_evidence=AK064951 (DDBJ%2C Best hit);ORF_evidence=XP_002875099.1 (RefSeq);InterPro=Microtubule-associated protein%2C MAP65/ASE1-type (IPR007145);NIAS_FLcDNA=J013000P23;Expression=AK064951;TENOR=Os03t0237600-02;KEGG=Os03t0237600-02
Chr03	irgsp1_rep	five_prime_UTR	7283941	7284233	.	-	.	Parent=Os03t0237600-02
Chr03	irgsp1_rep	CDS	7283842	7283940	.	-	0	Parent=Os03t0237600-02
Chr03	irgsp1_rep	CDS	7282324	7282527	.	-	0	Parent=Os03t0237600-02
Chr03	irgsp1_rep	CDS	7281316	7281573	.	-	0	Parent=Os03t0237600-02
Chr03	irgsp1_rep	CDS	7280689	7280904	.	-	0	Parent=Os03t0237600-02
Chr03	irgsp1_rep	CDS	7280448	7280603	.	-	0	Parent=Os03t0237600-02
Chr03	irgsp1_rep	CDS	7280210	7280369	.	-	0	Parent=Os03t0237600-02
Chr03	irgsp1_rep	CDS	7279972	7280123	.	-	2	Parent=Os03t0237600-02
Chr03	irgsp1_rep	CDS	7279755	7279842	.	-	0	Parent=Os03t0237600-02
Chr03	irgsp1_rep	CDS	7279428	7279501	.	-	2	Parent=Os03t0237600-02
Chr03	irgsp1_rep	CDS	7279265	7279339	.	-	0	Parent=Os03t0237600-02
Chr03	irgsp1_rep	CDS	7278820	7279170	.	-	0	Parent=Os03t0237600-02
Chr03	irgsp1_rep	three_prime_UTR	7278318	7278819	.	-	.	Parent=Os03t0237600-02
Chr03	irgsp1_rep	three_prime_UTR	7277370	7277893	.	-	.	Parent=Os03t0237600-02
Chr03	irgsp1_rep	mRNA	7277308	7284232	.	-	.	ID=Os03t0237600-04;Name=Os03t0237600-04;Locus_id=Os03g0237600;Note=MAP65/ASE1 family protein.;Transcript_evidence=AK067660 (DDBJ%2C Best hit),AK065181 (DDBJ%2C Best hit);ORF_evidence=XP_002875099.1 (RefSeq);NIAS_FLcDNA=J013116C06,J013002D18;Expression=AK067660;TENOR=Os03t0237600-04;KEGG=Os03t0237600-04
Chr03	irgsp1_rep	five_prime_UTR	7283941	7284232	.	-	.	Parent=Os03t0237600-04
Chr03	irgsp1_rep	CDS	7283842	7283940	.	-	0	Parent=Os03t0237600-04
Chr03	irgsp1_rep	CDS	7282324	7282527	.	-	0	Parent=Os03t0237600-04
Chr03	irgsp1_rep	CDS	7281316	7281573	.	-	0	Parent=Os03t0237600-04
Chr03	irgsp1_rep	CDS	7280689	7280904	.	-	0	Parent=Os03t0237600-04
Chr03	irgsp1_rep	CDS	7280448	7280603	.	-	0	Parent=Os03t0237600-04
Chr03	irgsp1_rep	CDS	7280210	7280369	.	-	0	Parent=Os03t0237600-04
Chr03	irgsp1_rep	CDS	7279972	7280123	.	-	2	Parent=Os03t0237600-04
Chr03	irgsp1_rep	CDS	7279755	7279842	.	-	0	Parent=Os03t0237600-04
Chr03	irgsp1_rep	CDS	7279428	7279501	.	-	2	Parent=Os03t0237600-04
Chr03	irgsp1_rep	CDS	7279265	7279339	.	-	0	Parent=Os03t0237600-04
Chr03	irgsp1_rep	CDS	7278820	7279170	.	-	0	Parent=Os03t0237600-04
Chr03	irgsp1_rep	three_prime_UTR	7277308	7278819	.	-	.	Parent=Os03t0237600-04
Chr03	irgsp1_rep	mRNA	7290796	7293226	.	-	.	ID=Os03t0237900-01;Name=Os03t0237900-01;Locus_id=Os03g0237900;Note=Hypothetical conserved gene.;Transcript_evidence=AK287718 (DDBJ%2C Best hit);ORF_evidence=NP_001173338.1 (RefSeq);NIAS_FLcDNA=J065135M08;TENOR=Os03t0237900-01;KEGG=Os03t0237900-01
Chr03	irgsp1_rep	five_prime_UTR	7293188	7293226	.	-	.	Parent=Os03t0237900-01
Chr03	irgsp1_rep	CDS	7292921	7293187	.	-	0	Parent=Os03t0237900-01
Chr03	irgsp1_rep	CDS	7292717	7292834	.	-	0	Parent=Os03t0237900-01
Chr03	irgsp1_rep	CDS	7292567	7292616	.	-	2	Parent=Os03t0237900-01
Chr03	irgsp1_rep	three_prime_UTR	7292518	7292566	.	-	.	Parent=Os03t0237900-01
Chr03	irgsp1_rep	three_prime_UTR	7291261	7292438	.	-	.	Parent=Os03t0237900-01
Chr03	irgsp1_rep	three_prime_UTR	7290796	7291112	.	-	.	Parent=Os03t0237900-01
Chr03	irgsp1_rep	mRNA	7293721	7293988	.	-	.	ID=Os03t0237950-00;Name=Os03t0237950-00;Locus_id=Os03g0237950;Note=Similar to fasciclin domain-containing protein.;Transcript_evidence=CT835289 (DDBJ%2C Best hit);ORF_evidence=XP_002316229.1 (RefSeq);TENOR=Os03t0237950-00;KEGG=Os03t0237950-00
Chr03	irgsp1_rep	CDS	7293848	7293988	.	-	0	Parent=Os03t0237950-00
Chr03	irgsp1_rep	three_prime_UTR	7293721	7293847	.	-	.	Parent=Os03t0237950-00
Chr03	irgsp1_rep	mRNA	7293944	7294856	.	+	.	ID=Os03t0238000-01;Name=Os03t0238000-01;Locus_id=Os03g0238000;Note=Hypothetical protein.;Transcript_evidence=AK108984 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-153-F04;Expression=AK108984;TENOR=Os03t0238000-01;KEGG=Os03t0238000-01
Chr03	irgsp1_rep	five_prime_UTR	7293944	7294271	.	+	.	Parent=Os03t0238000-01
Chr03	irgsp1_rep	CDS	7294272	7294787	.	+	0	Parent=Os03t0238000-01
Chr03	irgsp1_rep	three_prime_UTR	7294788	7294856	.	+	.	Parent=Os03t0238000-01
Chr03	irgsp1_rep	mRNA	7305284	7308499	.	-	.	ID=Os03t0238300-01;Name=Os03t0238300-01;Locus_id=Os03g0238300;Note=Endonuclease/exonuclease/phosphatase domain containing protein.;Transcript_evidence=AK122075 (DDBJ%2C Best hit),AK059494 (DDBJ%2C Best hit);ORF_evidence=NP_001147113.1 (RefSeq);GO=Molecular Function: inositol or phosphatidylinositol phosphatase activity (GO:0004437);InterPro=Inositol polyphosphate-related phosphatase (IPR000300),Endonuclease/exonuclease/phosphatase (IPR005135);NIAS_FLcDNA=J033118P13,001-028-H05;Expression=AK122075;TENOR=Os03t0238300-01;KEGG=Os03t0238300-01 (EC:3.1.3.36)
Chr03	irgsp1_rep	five_prime_UTR	7308423	7308499	.	-	.	Parent=Os03t0238300-01
Chr03	irgsp1_rep	CDS	7308396	7308422	.	-	0	Parent=Os03t0238300-01
Chr03	irgsp1_rep	CDS	7308065	7308300	.	-	0	Parent=Os03t0238300-01
Chr03	irgsp1_rep	CDS	7307819	7307926	.	-	1	Parent=Os03t0238300-01
Chr03	irgsp1_rep	CDS	7307309	7307723	.	-	1	Parent=Os03t0238300-01
Chr03	irgsp1_rep	CDS	7306969	7307153	.	-	0	Parent=Os03t0238300-01
Chr03	irgsp1_rep	CDS	7306134	7306242	.	-	1	Parent=Os03t0238300-01
Chr03	irgsp1_rep	CDS	7305875	7306032	.	-	0	Parent=Os03t0238300-01
Chr03	irgsp1_rep	CDS	7305516	7305765	.	-	1	Parent=Os03t0238300-01
Chr03	irgsp1_rep	three_prime_UTR	7305284	7305515	.	-	.	Parent=Os03t0238300-01
Chr03	irgsp1_rep	mRNA	7305284	7306054	.	-	.	ID=Os03t0238300-02;Name=Os03t0238300-02;Locus_id=Os03g0238300;Note=Similar to type I inositol-1%2C4%2C5-trisphosphate 5-phosphatase CVP2.;Transcript_evidence=AK070402 (DDBJ%2C Best hit);ORF_evidence=NP_001147113.1 (RefSeq);InterPro=Endonuclease/exonuclease/phosphatase (IPR005135);NIAS_FLcDNA=J023048M10;Expression=AK070402;TENOR=Os03t0238300-02;KEGG=Os03t0238300-02 (EC:3.1.3.36)
Chr03	irgsp1_rep	five_prime_UTR	7306054	7306054	.	-	.	Parent=Os03t0238300-02
Chr03	irgsp1_rep	CDS	7305875	7306053	.	-	0	Parent=Os03t0238300-02
Chr03	irgsp1_rep	CDS	7305516	7305765	.	-	1	Parent=Os03t0238300-02
Chr03	irgsp1_rep	three_prime_UTR	7305284	7305515	.	-	.	Parent=Os03t0238300-02
Chr03	irgsp1_rep	mRNA	7322529	7325182	.	+	.	ID=Os03t0238600-01;Name=Os03t0238600-01;Locus_id=Os03g0238600;CGSNL Gene Symbol=PAP3C;CGSNL Gene Name=PURPLE ACID PHOSPHATASE 3C;Oryzabase Gene Symbol Synonym(s)=OsPAP3c;Oryzabase Gene Name Synonym(s)=purple acid phosphatase 3c;Note=Similar to Purple acid phosphatase.;Transcript_evidence=AK070684 (DDBJ%2C Best hit),AK104621 (DDBJ%2C Best hit),AK104751 (DDBJ%2C Best hit),AK119619 (DDBJ%2C Best hit);ORF_evidence=D3KVP3 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Metallophosphoesterase domain (IPR004843);NIAS_FLcDNA=J023062L13,006-309-G08,001-038-F06,002-117-H01;Oryzabase=11378;TENOR=Os03t0238600-01
Chr03	irgsp1_rep	five_prime_UTR	7322529	7322593	.	+	.	Parent=Os03t0238600-01
Chr03	irgsp1_rep	CDS	7322594	7322791	.	+	0	Parent=Os03t0238600-01
Chr03	irgsp1_rep	CDS	7323506	7323662	.	+	0	Parent=Os03t0238600-01
Chr03	irgsp1_rep	CDS	7323778	7323885	.	+	2	Parent=Os03t0238600-01
Chr03	irgsp1_rep	CDS	7324002	7324129	.	+	2	Parent=Os03t0238600-01
Chr03	irgsp1_rep	CDS	7324241	7324369	.	+	0	Parent=Os03t0238600-01
Chr03	irgsp1_rep	CDS	7324453	7324520	.	+	0	Parent=Os03t0238600-01
Chr03	irgsp1_rep	CDS	7324638	7324869	.	+	1	Parent=Os03t0238600-01
Chr03	irgsp1_rep	three_prime_UTR	7324870	7325182	.	+	.	Parent=Os03t0238600-01
Chr03	irgsp1_rep	mRNA	7324024	7328856	.	-	.	ID=Os03t0238700-01;Name=Os03t0238700-01;Locus_id=Os03g0238700;Note=Similar to Acid phosphatase type 5.;Transcript_evidence=AK073387 (DDBJ%2C Best hit);ORF_evidence=B9F6P1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706),Molecular Function: L-ascorbic acid binding (GO:0031418);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123),Prolyl 4-hydroxylase%2C alpha subunit (IPR006620);NIAS_FLcDNA=J033043K11;Expression=AK073387;TENOR=Os03t0238700-01;KEGG=Os03t0238700-01
Chr03	irgsp1_rep	five_prime_UTR	7328832	7328856	.	-	.	Parent=Os03t0238700-01
Chr03	irgsp1_rep	CDS	7328736	7328831	.	-	0	Parent=Os03t0238700-01
Chr03	irgsp1_rep	CDS	7328439	7328641	.	-	0	Parent=Os03t0238700-01
Chr03	irgsp1_rep	CDS	7327801	7327873	.	-	1	Parent=Os03t0238700-01
Chr03	irgsp1_rep	CDS	7327302	7327397	.	-	0	Parent=Os03t0238700-01
Chr03	irgsp1_rep	CDS	7327148	7327198	.	-	0	Parent=Os03t0238700-01
Chr03	irgsp1_rep	CDS	7326319	7326756	.	-	0	Parent=Os03t0238700-01
Chr03	irgsp1_rep	three_prime_UTR	7325679	7326318	.	-	.	Parent=Os03t0238700-01
Chr03	irgsp1_rep	three_prime_UTR	7324610	7324858	.	-	.	Parent=Os03t0238700-01
Chr03	irgsp1_rep	three_prime_UTR	7324024	7324494	.	-	.	Parent=Os03t0238700-01
Chr03	irgsp1_rep	mRNA	7328435	7328831	.	+	.	ID=Os03t0238750-00;Name=Os03t0238750-00;Locus_id=Os03g0238750;Note=Hypothetical gene.;Transcript_evidence=EU948181 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0238750-00;KEGG=Os03t0238750-00
Chr03	irgsp1_rep	five_prime_UTR	7328435	7328441	.	+	.	Parent=Os03t0238750-00
Chr03	irgsp1_rep	CDS	7328442	7328831	.	+	0	Parent=Os03t0238750-00
Chr03	irgsp1_rep	mRNA	7329417	7335053	.	-	.	ID=Os03t0238800-01;Name=Os03t0238800-01;Locus_id=Os03g0238800;Note=Conserved hypothetical protein.;Transcript_evidence=AK288560 (DDBJ%2C Best hit);ORF_evidence=Q10PC8 (UniProt);NIAS_FLcDNA=J090047K12;TENOR=Os03t0238800-01;KEGG=Os03t0238800-01
Chr03	irgsp1_rep	five_prime_UTR	7334816	7335053	.	-	.	Parent=Os03t0238800-01
Chr03	irgsp1_rep	CDS	7334314	7334815	.	-	0	Parent=Os03t0238800-01
Chr03	irgsp1_rep	CDS	7333078	7333173	.	-	2	Parent=Os03t0238800-01
Chr03	irgsp1_rep	CDS	7332214	7332317	.	-	2	Parent=Os03t0238800-01
Chr03	irgsp1_rep	CDS	7331988	7332105	.	-	0	Parent=Os03t0238800-01
Chr03	irgsp1_rep	CDS	7331432	7331542	.	-	2	Parent=Os03t0238800-01
Chr03	irgsp1_rep	CDS	7331231	7331343	.	-	2	Parent=Os03t0238800-01
Chr03	irgsp1_rep	CDS	7331003	7331154	.	-	0	Parent=Os03t0238800-01
Chr03	irgsp1_rep	CDS	7329736	7330516	.	-	1	Parent=Os03t0238800-01
Chr03	irgsp1_rep	three_prime_UTR	7329417	7329735	.	-	.	Parent=Os03t0238800-01
Chr03	irgsp1_rep	mRNA	7339645	7342730	.	-	.	ID=Os03t0239000-01;Name=Os03t0239000-01;Locus_id=Os03g0239000;CGSNL Gene Symbol=XTH28;CGSNL Gene Name=XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 28;Oryzabase Gene Symbol Synonym(s)=OsXTH28;Oryzabase Gene Name Synonym(s)=xyloglucan endotransglucosylase/hydrolase%2C xyloglucan endotransglucosylase 28;Note=Concanavalin A-like lectin/glucanase%2C subgroup domain containing protein.;Transcript_evidence=AK061284 (DDBJ%2C Best hit);ORF_evidence=Q7XH71 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: cellular glucan metabolic process (GO:0006073),Cellular Component: cell wall (GO:0005618),Cellular Component: apoplast (GO:0048046),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762);InterPro=Glycoside hydrolase%2C family 16 (IPR000757),Concanavalin A-like lectin/glucanase (IPR008985),Xyloglucan endo-transglycosylase%2C C-terminal (IPR010713),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Xyloglucan endotransglucosylase/hydrolase (IPR016455);NIAS_FLcDNA=006-212-G03;Oryzabase=6509;Expression=AK061284;TENOR=Os03t0239000-01;KEGG=Os03t0239000-01
Chr03	irgsp1_rep	five_prime_UTR	7342658	7342730	.	-	.	Parent=Os03t0239000-01
Chr03	irgsp1_rep	CDS	7342426	7342657	.	-	0	Parent=Os03t0239000-01
Chr03	irgsp1_rep	CDS	7342238	7342338	.	-	2	Parent=Os03t0239000-01
Chr03	irgsp1_rep	CDS	7341891	7342099	.	-	0	Parent=Os03t0239000-01
Chr03	irgsp1_rep	CDS	7339749	7340223	.	-	1	Parent=Os03t0239000-01
Chr03	irgsp1_rep	three_prime_UTR	7339645	7339748	.	-	.	Parent=Os03t0239000-01
Chr03	irgsp1_rep	mRNA	7347523	7351625	.	+	.	ID=Os03t0239200-01;Name=Os03t0239200-01;Locus_id=Os03g0239200;CGSNL Gene Symbol=LC5;CGSNL Gene Name=LOW CADMIUM 5;Oryzabase Gene Symbol Synonym(s)=OsLC5%2C OsTTA%2C TTA;Oryzabase Gene Name Synonym(s)=OsTITANIA%2C TITANIA;Note=Similar to CONSTANS interacting protein 6.;Transcript_evidence=AK060803 (DDBJ%2C Best hit);ORF_evidence=NP_001147112.1 (RefSeq);InterPro=Protein of unknown function DUF1423%2C plant (IPR004082);NIAS_FLcDNA=001-033-F07;Oryzabase=23000;Expression=AK060803;TENOR=Os03t0239200-01;KEGG=Os03t0239200-01
Chr03	irgsp1_rep	five_prime_UTR	7347523	7347692	.	+	.	Parent=Os03t0239200-01
Chr03	irgsp1_rep	CDS	7347693	7349095	.	+	0	Parent=Os03t0239200-01
Chr03	irgsp1_rep	CDS	7350959	7351091	.	+	1	Parent=Os03t0239200-01
Chr03	irgsp1_rep	three_prime_UTR	7351092	7351625	.	+	.	Parent=Os03t0239200-01
Chr03	irgsp1_rep	mRNA	7347524	7351581	.	+	.	ID=Os03t0239200-02;Name=Os03t0239200-02;Locus_id=Os03g0239200;RAP-DB Gene Symbol Synonym(s)=OsTTA%2C LC5;RAP-DB Gene Name Synonym(s)=OsTITANIA%2C LOW CADMIUM 5;CGSNL Gene Symbol=LC5;CGSNL Gene Name=LOW CADMIUM 5;Oryzabase Gene Symbol Synonym(s)=OsLC5%2C OsTTA%2C TTA;Oryzabase Gene Name Synonym(s)=OsTITANIA%2C TITANIA;Note=PHD-finger (plant homeodomain-finger) protein%2C Growth regulator%2C Transcriptional regulator%2C Regulator of multiple metal transporter genes;Transcript_evidence=AK068650,AK068684;ORF_evidence=Q10PC5;InterPro=Protein OBERON (IPR004082),Oberon%2C PHD finger domain (IPR032881),Oberon%2C coiled-coil region (IPR032535);NIAS_FLcDNA=J013159C13,J013159E06;Manual Curation=December 6%2C 2018;Literature_PMID=30194869;Oryzabase=23000;TENOR=Os03t0239200-02;Subcellular location=nucleus (GO:0005634)
Chr03	irgsp1_rep	five_prime_UTR	7347524	7347692	.	+	.	Parent=Os03t0239200-02
Chr03	irgsp1_rep	CDS	7347693	7349328	.	+	0	Parent=Os03t0239200-02
Chr03	irgsp1_rep	CDS	7350840	7351387	.	+	2	Parent=Os03t0239200-02
Chr03	irgsp1_rep	three_prime_UTR	7351388	7351581	.	+	.	Parent=Os03t0239200-02
Chr03	irgsp1_rep	mRNA	7347559	7351581	.	+	.	ID=Os03t0239200-03;Name=Os03t0239200-03;Locus_id=Os03g0239200;CGSNL Gene Symbol=LC5;CGSNL Gene Name=LOW CADMIUM 5;Oryzabase Gene Symbol Synonym(s)=OsLC5%2C OsTTA%2C TTA;Oryzabase Gene Name Synonym(s)=OsTITANIA%2C TITANIA;Note=Protein of unknown function DUF1423%2C plant domain containing protein.;Transcript_evidence=AK099748 (DDBJ%2C Best hit);ORF_evidence=NP_001147112.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Protein of unknown function DUF1423%2C plant (IPR004082);NIAS_FLcDNA=J013091O20;Oryzabase=23000;Expression=AK099748;TENOR=Os03t0239200-03;KEGG=Os03t0239200-03
Chr03	irgsp1_rep	five_prime_UTR	7347559	7347692	.	+	.	Parent=Os03t0239200-03
Chr03	irgsp1_rep	CDS	7347693	7349328	.	+	0	Parent=Os03t0239200-03
Chr03	irgsp1_rep	CDS	7350840	7351387	.	+	2	Parent=Os03t0239200-03
Chr03	irgsp1_rep	three_prime_UTR	7351388	7351581	.	+	.	Parent=Os03t0239200-03
Chr03	irgsp1_rep	mRNA	7347583	7351722	.	+	.	ID=Os03t0239200-04;Name=Os03t0239200-04;Locus_id=Os03g0239200;CGSNL Gene Symbol=LC5;CGSNL Gene Name=LOW CADMIUM 5;Oryzabase Gene Symbol Synonym(s)=OsLC5%2C OsTTA%2C TTA;Oryzabase Gene Name Synonym(s)=OsTITANIA%2C TITANIA;Note=Protein of unknown function DUF1423%2C plant domain containing protein.;Transcript_evidence=AK100953 (DDBJ%2C Best hit);ORF_evidence=NP_001147112.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Protein of unknown function DUF1423%2C plant (IPR004082);NIAS_FLcDNA=J023139M22;Oryzabase=23000;Expression=AK100953;TENOR=Os03t0239200-04;KEGG=Os03t0239200-04
Chr03	irgsp1_rep	five_prime_UTR	7347583	7347692	.	+	.	Parent=Os03t0239200-04
Chr03	irgsp1_rep	CDS	7347693	7349328	.	+	0	Parent=Os03t0239200-04
Chr03	irgsp1_rep	CDS	7350840	7351387	.	+	2	Parent=Os03t0239200-04
Chr03	irgsp1_rep	three_prime_UTR	7351388	7351722	.	+	.	Parent=Os03t0239200-04
Chr03	irgsp1_rep	mRNA	7353103	7354368	.	-	.	ID=Os03t0239300-01;Name=Os03t0239300-01;Locus_id=Os03g0239300;Oryzabase Gene Name Synonym(s)=C2H2 transcription factor;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK066038 (DDBJ%2C Best hit);ORF_evidence=A2XED3 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087);NIAS_FLcDNA=J013047G22;Oryzabase=16187;Expression=AK066038;TENOR=Os03t0239300-01;KEGG=Os03t0239300-01
Chr03	irgsp1_rep	five_prime_UTR	7354063	7354368	.	-	.	Parent=Os03t0239300-01
Chr03	irgsp1_rep	CDS	7353340	7354062	.	-	0	Parent=Os03t0239300-01
Chr03	irgsp1_rep	three_prime_UTR	7353103	7353339	.	-	.	Parent=Os03t0239300-01
Chr03	irgsp1_rep	mRNA	7353076	7354301	.	-	.	ID=Os03t0239300-02;Name=Os03t0239300-02;Locus_id=Os03g0239300;Oryzabase Gene Name Synonym(s)=C2H2 transcription factor;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK068149 (DDBJ%2C Best hit);ORF_evidence=A2XED3 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087);NIAS_FLcDNA=J013131M23;Oryzabase=16187;Expression=AK068149;TENOR=Os03t0239300-02;KEGG=Os03t0239300-02
Chr03	irgsp1_rep	five_prime_UTR	7354063	7354301	.	-	.	Parent=Os03t0239300-02
Chr03	irgsp1_rep	CDS	7353340	7354062	.	-	0	Parent=Os03t0239300-02
Chr03	irgsp1_rep	three_prime_UTR	7353076	7353339	.	-	.	Parent=Os03t0239300-02
Chr03	irgsp1_rep	mRNA	7353147	7354138	.	-	.	ID=Os03t0239300-03;Name=Os03t0239300-03;Locus_id=Os03g0239300;Oryzabase Gene Name Synonym(s)=C2H2 transcription factor;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK071768 (DDBJ%2C Best hit);ORF_evidence=A2XED3 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087);NIAS_FLcDNA=J023110G13;Oryzabase=16187;Expression=AK071768;TENOR=Os03t0239300-03;KEGG=Os03t0239300-03
Chr03	irgsp1_rep	five_prime_UTR	7354063	7354138	.	-	.	Parent=Os03t0239300-03
Chr03	irgsp1_rep	CDS	7353340	7354062	.	-	0	Parent=Os03t0239300-03
Chr03	irgsp1_rep	three_prime_UTR	7353147	7353339	.	-	.	Parent=Os03t0239300-03
Chr03	irgsp1_rep	mRNA	7358092	7369614	.	-	.	ID=Os03t0239400-01;Name=Os03t0239400-01;Locus_id=Os03g0239400;CGSNL Gene Symbol=BZIP26;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 26;Oryzabase Gene Symbol Synonym(s)=OsbZIP26;Oryzabase Gene Name Synonym(s)=bZIP transcription factor 26;Note=Similar to Transcription factor HBP-1a(C14).;Transcript_evidence=AK066563 (DDBJ%2C Best hit);ORF_evidence=Q41556 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616),G-box binding%2C MFMR (IPR012900);NIAS_FLcDNA=J013071G08;Oryzabase=10114;Expression=AK066563;TENOR=Os03t0239400-01;KEGG=Os03t0239400-01
Chr03	irgsp1_rep	five_prime_UTR	7369277	7369614	.	-	.	Parent=Os03t0239400-01
Chr03	irgsp1_rep	five_prime_UTR	7363894	7363992	.	-	.	Parent=Os03t0239400-01
Chr03	irgsp1_rep	five_prime_UTR	7363541	7363586	.	-	.	Parent=Os03t0239400-01
Chr03	irgsp1_rep	CDS	7363484	7363540	.	-	0	Parent=Os03t0239400-01
Chr03	irgsp1_rep	CDS	7363348	7363407	.	-	0	Parent=Os03t0239400-01
Chr03	irgsp1_rep	CDS	7363162	7363266	.	-	0	Parent=Os03t0239400-01
Chr03	irgsp1_rep	CDS	7362799	7362882	.	-	0	Parent=Os03t0239400-01
Chr03	irgsp1_rep	CDS	7362643	7362702	.	-	0	Parent=Os03t0239400-01
Chr03	irgsp1_rep	CDS	7362213	7362379	.	-	0	Parent=Os03t0239400-01
Chr03	irgsp1_rep	CDS	7362089	7362140	.	-	1	Parent=Os03t0239400-01
Chr03	irgsp1_rep	CDS	7361207	7361249	.	-	0	Parent=Os03t0239400-01
Chr03	irgsp1_rep	CDS	7360424	7360686	.	-	2	Parent=Os03t0239400-01
Chr03	irgsp1_rep	CDS	7360252	7360329	.	-	0	Parent=Os03t0239400-01
Chr03	irgsp1_rep	CDS	7358923	7359048	.	-	0	Parent=Os03t0239400-01
Chr03	irgsp1_rep	CDS	7358600	7358656	.	-	0	Parent=Os03t0239400-01
Chr03	irgsp1_rep	three_prime_UTR	7358567	7358599	.	-	.	Parent=Os03t0239400-01
Chr03	irgsp1_rep	three_prime_UTR	7358092	7358482	.	-	.	Parent=Os03t0239400-01
Chr03	irgsp1_rep	mRNA	7408551	7408750	.	-	.	ID=Os03t0240166-00;Name=Os03t0240166-00;Locus_id=Os03g0240166;Note=Non-protein coding transcript.;Transcript_evidence=EU942606 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0240166-00
Chr03	irgsp1_rep	exon	7408551	7408750	.	-	.	Parent=Os03t0240166-00
Chr03	irgsp1_rep	mRNA	7430659	7433595	.	+	.	ID=Os03t0240400-01;Name=Os03t0240400-01;Locus_id=Os03g0240400;Note=Conserved hypothetical protein.;Transcript_evidence=AK100490 (DDBJ%2C Best hit);ORF_evidence=Q10PB4 (UniProt);NIAS_FLcDNA=J023098G01;TENOR=Os03t0240400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	7430659	7430814	.	+	.	Parent=Os03t0240400-01
Chr03	irgsp1_rep	CDS	7430815	7433445	.	+	0	Parent=Os03t0240400-01
Chr03	irgsp1_rep	three_prime_UTR	7433446	7433595	.	+	.	Parent=Os03t0240400-01
Chr03	irgsp1_rep	mRNA	7434060	7438082	.	-	.	ID=Os03t0240500-01;Name=Os03t0240500-01;Locus_id=Os03g0240500;Note=Similar to Toc34-2 protein.;Transcript_evidence=AK058676 (DDBJ%2C Best hit);ORF_evidence=NP_001105522.1 (RefSeq);GO=Biological Process: intracellular protein transport (GO:0006886),Cellular Component: chloroplast outer membrane (GO:0009707),Molecular Function: GTP binding (GO:0005525),Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450);InterPro=Chloroplast protein import component Toc34 (IPR005688),AIG1 (IPR006703);NIAS_FLcDNA=001-018-H08;TENOR=Os03t0240500-01
Chr03	irgsp1_rep	five_prime_UTR	7437923	7438082	.	-	.	Parent=Os03t0240500-01
Chr03	irgsp1_rep	five_prime_UTR	7437772	7437817	.	-	.	Parent=Os03t0240500-01
Chr03	irgsp1_rep	CDS	7437670	7437771	.	-	0	Parent=Os03t0240500-01
Chr03	irgsp1_rep	CDS	7437394	7437501	.	-	0	Parent=Os03t0240500-01
Chr03	irgsp1_rep	CDS	7437181	7437305	.	-	0	Parent=Os03t0240500-01
Chr03	irgsp1_rep	CDS	7435900	7436164	.	-	1	Parent=Os03t0240500-01
Chr03	irgsp1_rep	CDS	7434779	7434847	.	-	0	Parent=Os03t0240500-01
Chr03	irgsp1_rep	CDS	7434530	7434691	.	-	0	Parent=Os03t0240500-01
Chr03	irgsp1_rep	CDS	7434276	7434428	.	-	0	Parent=Os03t0240500-01
Chr03	irgsp1_rep	three_prime_UTR	7434060	7434275	.	-	.	Parent=Os03t0240500-01
Chr03	irgsp1_rep	mRNA	7434069	7438005	.	-	.	ID=Os03t0240500-02;Name=Os03t0240500-02;Locus_id=Os03g0240500;Note=Similar to Toc34-2 protein.;Transcript_evidence=AK099032 (DDBJ%2C Best hit);ORF_evidence=NP_001105522.1 (RefSeq);GO=Biological Process: intracellular protein transport (GO:0006886),Cellular Component: chloroplast outer membrane (GO:0009707),Molecular Function: GTP binding (GO:0005525),Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450);InterPro=Chloroplast protein import component Toc34 (IPR005688),AIG1 (IPR006703);NIAS_FLcDNA=J013128A13;TENOR=Os03t0240500-02
Chr03	irgsp1_rep	five_prime_UTR	7437923	7438005	.	-	.	Parent=Os03t0240500-02
Chr03	irgsp1_rep	five_prime_UTR	7437772	7437817	.	-	.	Parent=Os03t0240500-02
Chr03	irgsp1_rep	CDS	7437670	7437771	.	-	0	Parent=Os03t0240500-02
Chr03	irgsp1_rep	CDS	7437394	7437501	.	-	0	Parent=Os03t0240500-02
Chr03	irgsp1_rep	CDS	7437181	7437305	.	-	0	Parent=Os03t0240500-02
Chr03	irgsp1_rep	CDS	7435900	7436164	.	-	1	Parent=Os03t0240500-02
Chr03	irgsp1_rep	CDS	7434779	7434847	.	-	0	Parent=Os03t0240500-02
Chr03	irgsp1_rep	CDS	7434530	7434691	.	-	0	Parent=Os03t0240500-02
Chr03	irgsp1_rep	CDS	7434276	7434428	.	-	0	Parent=Os03t0240500-02
Chr03	irgsp1_rep	three_prime_UTR	7434069	7434275	.	-	.	Parent=Os03t0240500-02
Chr03	irgsp1_rep	mRNA	7440402	7442007	.	-	.	ID=Os03t0240600-01;Name=Os03t0240600-01;Locus_id=Os03g0240600;RAP-DB Gene Symbol Synonym(s)=OsUPS;RAP-DB Gene Name Synonym(s)=U-box containing E3 ligase induced by phosphate starvation;Oryzabase Gene Symbol Synonym(s)=OsUPS%2C OsPUB41;Oryzabase Gene Name Synonym(s)=U-box containing E3 ligase induced by phosphate starvation%2C plant U-box-containing protein 41%2C U-box protein 41;Note=U-box containing E3 ligase%2C Response to phosphate starvation;Transcript_evidence=AK109161,JN162673 (Dongjin);ORF_evidence=Q10PB1;GO=Biological Process: protein ubiquitination (GO:0016567),Molecular Function: ubiquitin-protein transferase activity (GO:0004842),Molecular Function: binding (GO:0005488);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),U box domain (IPR003613),Armadillo-type fold (IPR016024),Armadillo-like helical (IPR011989);NIAS_FLcDNA=002-155-G08;Manual Curation=April 25%2C 2017;Literature_PMID=22201023;Oryzabase=10220;Expression=AK109161;TENOR=Os03t0240600-01;KEGG=Os03t0240600-01;Subcellular location=chloroplast (GO:0009507)
Chr03	irgsp1_rep	five_prime_UTR	7441909	7442007	.	-	.	Parent=Os03t0240600-01
Chr03	irgsp1_rep	CDS	7440571	7441908	.	-	0	Parent=Os03t0240600-01
Chr03	irgsp1_rep	three_prime_UTR	7440402	7440570	.	-	.	Parent=Os03t0240600-01
Chr03	irgsp1_rep	mRNA	7446000	7449581	.	-	.	ID=Os03t0240700-01;Name=Os03t0240700-01;Locus_id=Os03g0240700;Note=Similar to Erwinia induced protein 2.;Transcript_evidence=AK071799 (DDBJ%2C Best hit);ORF_evidence=B4FAP8 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Cellular Component: endoplasmic reticulum (GO:0005783),Cellular Component: integral to membrane (GO:0016021);InterPro=B-cell receptor-associated 31-like (IPR008417);NIAS_FLcDNA=J023112A13;Expression=AK071799;TENOR=Os03t0240700-01;KEGG=Os03t0240700-01
Chr03	irgsp1_rep	five_prime_UTR	7449447	7449581	.	-	.	Parent=Os03t0240700-01
Chr03	irgsp1_rep	CDS	7449275	7449446	.	-	0	Parent=Os03t0240700-01
Chr03	irgsp1_rep	CDS	7449080	7449162	.	-	2	Parent=Os03t0240700-01
Chr03	irgsp1_rep	CDS	7447214	7447269	.	-	0	Parent=Os03t0240700-01
Chr03	irgsp1_rep	CDS	7447045	7447123	.	-	1	Parent=Os03t0240700-01
Chr03	irgsp1_rep	three_prime_UTR	7447028	7447044	.	-	.	Parent=Os03t0240700-01
Chr03	irgsp1_rep	three_prime_UTR	7446000	7446328	.	-	.	Parent=Os03t0240700-01
Chr03	irgsp1_rep	mRNA	7449797	7453031	.	+	.	ID=Os03t0240800-01;Name=Os03t0240800-01;Locus_id=Os03g0240800;Oryzabase Gene Name Synonym(s)=Sm gene%2C Sm family protein;Note=Similar to AGL157Cp.;Transcript_evidence=AK061178 (DDBJ%2C Best hit);ORF_evidence=B6UGP6 (UniProt);InterPro=Like-Sm ribonucleoprotein (LSM) domain (IPR001163),Like-Sm ribonucleoprotein (LSM) domain%2C eukaryotic/archaea-type (IPR006649),Like-Sm ribonucleoprotein (LSM)-related domain (IPR010920);NIAS_FLcDNA=006-209-D01;Oryzabase=15642;Expression=AK061178;TENOR=Os03t0240800-01;KEGG=Os03t0240800-01
Chr03	irgsp1_rep	five_prime_UTR	7449797	7449928	.	+	.	Parent=Os03t0240800-01
Chr03	irgsp1_rep	CDS	7449929	7450087	.	+	0	Parent=Os03t0240800-01
Chr03	irgsp1_rep	CDS	7450206	7450258	.	+	0	Parent=Os03t0240800-01
Chr03	irgsp1_rep	CDS	7450338	7450404	.	+	1	Parent=Os03t0240800-01
Chr03	irgsp1_rep	CDS	7450493	7450549	.	+	0	Parent=Os03t0240800-01
Chr03	irgsp1_rep	CDS	7452573	7452635	.	+	0	Parent=Os03t0240800-01
Chr03	irgsp1_rep	three_prime_UTR	7452636	7453031	.	+	.	Parent=Os03t0240800-01
Chr03	irgsp1_rep	mRNA	7449822	7453038	.	+	.	ID=Os03t0240800-02;Name=Os03t0240800-02;Locus_id=Os03g0240800;Oryzabase Gene Name Synonym(s)=Sm gene%2C Sm family protein;Note=Similar to AGL157Cp.;Transcript_evidence=AK121552 (DDBJ%2C Best hit),AK059292 (DDBJ%2C Best hit);ORF_evidence=B6UGP6 (UniProt);InterPro=Like-Sm ribonucleoprotein (LSM) domain (IPR001163),Like-Sm ribonucleoprotein (LSM) domain%2C eukaryotic/archaea-type (IPR006649),Like-Sm ribonucleoprotein (LSM)-related domain (IPR010920);NIAS_FLcDNA=J033033E14,001-025-E05;Oryzabase=15642;TENOR=Os03t0240800-02
Chr03	irgsp1_rep	five_prime_UTR	7449822	7449928	.	+	.	Parent=Os03t0240800-02
Chr03	irgsp1_rep	CDS	7449929	7450087	.	+	0	Parent=Os03t0240800-02
Chr03	irgsp1_rep	CDS	7450206	7450258	.	+	0	Parent=Os03t0240800-02
Chr03	irgsp1_rep	CDS	7450338	7450404	.	+	1	Parent=Os03t0240800-02
Chr03	irgsp1_rep	CDS	7450493	7450549	.	+	0	Parent=Os03t0240800-02
Chr03	irgsp1_rep	CDS	7452573	7452635	.	+	0	Parent=Os03t0240800-02
Chr03	irgsp1_rep	three_prime_UTR	7452636	7453038	.	+	.	Parent=Os03t0240800-02
Chr03	irgsp1_rep	mRNA	7453731	7457759	.	-	.	ID=Os03t0240900-01;Name=Os03t0240900-01;Locus_id=Os03g0240900;Note=Tubulin/FtsZ%2C GTPase domain containing protein.;Transcript_evidence=AK073420 (DDBJ%2C Best hit);ORF_evidence=B8AJZ6 (UniProt);GO=Biological Process: protein polymerization (GO:0051258),Cellular Component: protein complex (GO:0043234);InterPro=Tubulin/FtsZ%2C GTPase domain (IPR003008),Misato Segment II%2C myosin-like (IPR019605);NIAS_FLcDNA=J033044H05;Expression=AK073420;TENOR=Os03t0240900-01;KEGG=Os03t0240900-01
Chr03	irgsp1_rep	five_prime_UTR	7457551	7457759	.	-	.	Parent=Os03t0240900-01
Chr03	irgsp1_rep	CDS	7457479	7457550	.	-	0	Parent=Os03t0240900-01
Chr03	irgsp1_rep	CDS	7457263	7457364	.	-	0	Parent=Os03t0240900-01
Chr03	irgsp1_rep	CDS	7457115	7457160	.	-	0	Parent=Os03t0240900-01
Chr03	irgsp1_rep	CDS	7456936	7457015	.	-	2	Parent=Os03t0240900-01
Chr03	irgsp1_rep	CDS	7456036	7456386	.	-	0	Parent=Os03t0240900-01
Chr03	irgsp1_rep	CDS	7455640	7455892	.	-	0	Parent=Os03t0240900-01
Chr03	irgsp1_rep	CDS	7454987	7455229	.	-	2	Parent=Os03t0240900-01
Chr03	irgsp1_rep	CDS	7454779	7454898	.	-	2	Parent=Os03t0240900-01
Chr03	irgsp1_rep	CDS	7453925	7454373	.	-	2	Parent=Os03t0240900-01
Chr03	irgsp1_rep	three_prime_UTR	7453731	7453924	.	-	.	Parent=Os03t0240900-01
Chr03	irgsp1_rep	mRNA	7467714	7468855	.	-	.	ID=Os03t0241001-00;Name=Os03t0241001-00;Locus_id=Os03g0241001;Note=Similar to DNA binding protein.;Transcript_evidence=AK375760 (DDBJ);ORF_evidence=NP_001149103.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);TENOR=Os03t0241001-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	7468540	7468855	.	-	0	Parent=Os03t0241001-00
Chr03	irgsp1_rep	CDS	7468232	7468309	.	-	2	Parent=Os03t0241001-00
Chr03	irgsp1_rep	CDS	7468072	7468112	.	-	2	Parent=Os03t0241001-00
Chr03	irgsp1_rep	three_prime_UTR	7467714	7468071	.	-	.	Parent=Os03t0241001-00
Chr03	irgsp1_rep	mRNA	7469617	7475442	.	+	.	ID=Os03t0241100-01;Name=Os03t0241100-01;Locus_id=Os03g0241100;Note=Myb%2C DNA-binding domain containing protein.;Transcript_evidence=AK103029 (DDBJ%2C Best hit);ORF_evidence=A2XEE4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),SANT%2C eukarya (IPR017884);NIAS_FLcDNA=J033117C04;Expression=AK103029;TENOR=Os03t0241100-01;KEGG=Os03t0241100-01
Chr03	irgsp1_rep	five_prime_UTR	7469617	7469901	.	+	.	Parent=Os03t0241100-01
Chr03	irgsp1_rep	five_prime_UTR	7470071	7470095	.	+	.	Parent=Os03t0241100-01
Chr03	irgsp1_rep	CDS	7470096	7470191	.	+	0	Parent=Os03t0241100-01
Chr03	irgsp1_rep	CDS	7470293	7470340	.	+	0	Parent=Os03t0241100-01
Chr03	irgsp1_rep	CDS	7471453	7471562	.	+	0	Parent=Os03t0241100-01
Chr03	irgsp1_rep	CDS	7472219	7472303	.	+	1	Parent=Os03t0241100-01
Chr03	irgsp1_rep	CDS	7472407	7472683	.	+	0	Parent=Os03t0241100-01
Chr03	irgsp1_rep	CDS	7472864	7473022	.	+	2	Parent=Os03t0241100-01
Chr03	irgsp1_rep	CDS	7473131	7473234	.	+	2	Parent=Os03t0241100-01
Chr03	irgsp1_rep	CDS	7473498	7473736	.	+	0	Parent=Os03t0241100-01
Chr03	irgsp1_rep	CDS	7473833	7474151	.	+	1	Parent=Os03t0241100-01
Chr03	irgsp1_rep	CDS	7474233	7474637	.	+	0	Parent=Os03t0241100-01
Chr03	irgsp1_rep	CDS	7474725	7474862	.	+	0	Parent=Os03t0241100-01
Chr03	irgsp1_rep	CDS	7474944	7475123	.	+	0	Parent=Os03t0241100-01
Chr03	irgsp1_rep	three_prime_UTR	7475124	7475442	.	+	.	Parent=Os03t0241100-01
Chr03	irgsp1_rep	mRNA	7469731	7474612	.	+	.	ID=Os03t0241100-02;Name=Os03t0241100-02;Locus_id=Os03g0241100;Note=Hypothetical conserved gene.;Transcript_evidence=AK103791 (DDBJ%2C Best hit);ORF_evidence=A2XEE4 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Myb%2C DNA-binding (IPR014778),SANT%2C eukarya (IPR017884);NIAS_FLcDNA=J033145L18;TENOR=Os03t0241100-02
Chr03	irgsp1_rep	five_prime_UTR	7469731	7469901	.	+	.	Parent=Os03t0241100-02
Chr03	irgsp1_rep	five_prime_UTR	7470071	7470095	.	+	.	Parent=Os03t0241100-02
Chr03	irgsp1_rep	CDS	7470096	7470191	.	+	0	Parent=Os03t0241100-02
Chr03	irgsp1_rep	CDS	7470293	7470340	.	+	0	Parent=Os03t0241100-02
Chr03	irgsp1_rep	CDS	7471453	7471562	.	+	0	Parent=Os03t0241100-02
Chr03	irgsp1_rep	CDS	7472219	7472303	.	+	1	Parent=Os03t0241100-02
Chr03	irgsp1_rep	CDS	7472407	7472683	.	+	0	Parent=Os03t0241100-02
Chr03	irgsp1_rep	CDS	7472864	7473022	.	+	2	Parent=Os03t0241100-02
Chr03	irgsp1_rep	CDS	7473131	7473234	.	+	2	Parent=Os03t0241100-02
Chr03	irgsp1_rep	CDS	7473498	7473736	.	+	0	Parent=Os03t0241100-02
Chr03	irgsp1_rep	CDS	7473833	7474151	.	+	1	Parent=Os03t0241100-02
Chr03	irgsp1_rep	CDS	7474233	7474612	.	+	0	Parent=Os03t0241100-02
Chr03	irgsp1_rep	mRNA	7469781	7475442	.	+	.	ID=Os03t0241100-03;Name=Os03t0241100-03;Locus_id=Os03g0241100;Note=Myb%2C DNA-binding domain containing protein.;Transcript_evidence=AK102688 (DDBJ%2C Best hit);ORF_evidence=A2XEE4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),SANT%2C eukarya (IPR017884);NIAS_FLcDNA=J033102O16;Expression=AK102688;TENOR=Os03t0241100-03;KEGG=Os03t0241100-03
Chr03	irgsp1_rep	five_prime_UTR	7469781	7469901	.	+	.	Parent=Os03t0241100-03
Chr03	irgsp1_rep	five_prime_UTR	7470071	7470095	.	+	.	Parent=Os03t0241100-03
Chr03	irgsp1_rep	CDS	7470096	7470191	.	+	0	Parent=Os03t0241100-03
Chr03	irgsp1_rep	CDS	7470293	7470340	.	+	0	Parent=Os03t0241100-03
Chr03	irgsp1_rep	CDS	7471453	7471562	.	+	0	Parent=Os03t0241100-03
Chr03	irgsp1_rep	CDS	7472219	7472303	.	+	1	Parent=Os03t0241100-03
Chr03	irgsp1_rep	CDS	7472407	7472683	.	+	0	Parent=Os03t0241100-03
Chr03	irgsp1_rep	CDS	7472864	7473022	.	+	2	Parent=Os03t0241100-03
Chr03	irgsp1_rep	CDS	7473131	7473234	.	+	2	Parent=Os03t0241100-03
Chr03	irgsp1_rep	CDS	7473498	7473736	.	+	0	Parent=Os03t0241100-03
Chr03	irgsp1_rep	CDS	7473833	7474151	.	+	1	Parent=Os03t0241100-03
Chr03	irgsp1_rep	CDS	7474233	7474637	.	+	0	Parent=Os03t0241100-03
Chr03	irgsp1_rep	CDS	7474725	7474862	.	+	0	Parent=Os03t0241100-03
Chr03	irgsp1_rep	CDS	7474944	7475123	.	+	0	Parent=Os03t0241100-03
Chr03	irgsp1_rep	three_prime_UTR	7475124	7475442	.	+	.	Parent=Os03t0241100-03
Chr03	irgsp1_rep	mRNA	7476238	7478159	.	+	.	ID=Os03t0241200-00;Name=Os03t0241200-00;Locus_id=Os03g0241200;Note=Similar to NHP2-like protein 1 (High mobility group-like nuclear protein 2 homolog 1) ([U4/U6.U5] tri-snRNP 15.5 kDa protein) (OTK27).;Transcript_evidence=CT837966 (DDBJ%2C Best hit);ORF_evidence=NP_197516.1 (RefSeq);GO=Biological Process: ribosome biogenesis (GO:0042254),Cellular Component: nucleolus (GO:0005730),Cellular Component: ribonucleoprotein complex (GO:0030529),Molecular Function: RNA binding (GO:0003723);InterPro=H/ACA ribonucleoprotein complex%2C subunit Nhp2%2C eukaryote (IPR002415),Ribosomal protein L7Ae conserved site (IPR004037),Ribosomal protein L7Ae/L30e/S12e/Gadd45 (IPR004038),Ribosomal protein L7Ae/L8/Nhp2 family (IPR018492);TENOR=Os03t0241200-00;KEGG=Os03t0241200-00
Chr03	irgsp1_rep	five_prime_UTR	7476238	7476402	.	+	.	Parent=Os03t0241200-00
Chr03	irgsp1_rep	CDS	7476403	7476405	.	+	0	Parent=Os03t0241200-00
Chr03	irgsp1_rep	CDS	7476525	7476645	.	+	0	Parent=Os03t0241200-00
Chr03	irgsp1_rep	CDS	7476736	7476839	.	+	2	Parent=Os03t0241200-00
Chr03	irgsp1_rep	CDS	7477624	7477755	.	+	0	Parent=Os03t0241200-00
Chr03	irgsp1_rep	CDS	7477853	7477879	.	+	0	Parent=Os03t0241200-00
Chr03	irgsp1_rep	three_prime_UTR	7477880	7478159	.	+	.	Parent=Os03t0241200-00
Chr03	irgsp1_rep	mRNA	7480379	7483214	.	+	.	ID=Os03t0241300-01;Name=Os03t0241300-01;Locus_id=Os03g0241300;Oryzabase Gene Symbol Synonym(s)=OsPE;Oryzabase Gene Name Synonym(s)=polyembryo%2C Polyembryony%2C polyembryonic mutant;Note=Conserved hypothetical protein.;Transcript_evidence=AK064767 (DDBJ%2C Best hit);ORF_evidence=Q10PA4 (UniProt);NIAS_FLcDNA=J013000A02;Oryzabase=11531;TENOR=Os03t0241300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	7480379	7481665	.	+	.	Parent=Os03t0241300-01
Chr03	irgsp1_rep	CDS	7481666	7482005	.	+	0	Parent=Os03t0241300-01
Chr03	irgsp1_rep	CDS	7482087	7483021	.	+	2	Parent=Os03t0241300-01
Chr03	irgsp1_rep	three_prime_UTR	7483022	7483214	.	+	.	Parent=Os03t0241300-01
Chr03	irgsp1_rep	mRNA	7480380	7481111	.	+	.	ID=Os03t0241300-02;Name=Os03t0241300-02;Locus_id=Os03g0241300;Oryzabase Gene Symbol Synonym(s)=OsPE;Oryzabase Gene Name Synonym(s)=polyembryo%2C Polyembryony%2C polyembryonic mutant;Note=Similar to Stress inducible protein coi6.1.;Transcript_evidence=AK062662 (DDBJ%2C Best hit),AK072703 (DDBJ%2C Best hit);ORF_evidence=Q461D5 (UniProt);NIAS_FLcDNA=001-105-F06,J023135J11;Oryzabase=11531;Expression=AK062662;TENOR=Os03t0241300-02;KEGG=Os03t0241300-02
Chr03	irgsp1_rep	five_prime_UTR	7480380	7480613	.	+	.	Parent=Os03t0241300-02
Chr03	irgsp1_rep	CDS	7480614	7480712	.	+	0	Parent=Os03t0241300-02
Chr03	irgsp1_rep	three_prime_UTR	7480713	7481111	.	+	.	Parent=Os03t0241300-02
Chr03	irgsp1_rep	mRNA	7482105	7483234	.	+	.	ID=Os03t0241300-04;Name=Os03t0241300-04;Locus_id=Os03g0241300;Oryzabase Gene Symbol Synonym(s)=OsPE;Oryzabase Gene Name Synonym(s)=polyembryo%2C Polyembryony%2C polyembryonic mutant;Note=Hypothetical conserved gene.;Transcript_evidence=AK058297 (DDBJ%2C Best hit);ORF_evidence=Q10PA4 (UniProt);NIAS_FLcDNA=001-013-F05;Oryzabase=11531;TENOR=Os03t0241300-04;KEGG=Os03t0241300-04
Chr03	irgsp1_rep	five_prime_UTR	7482105	7482106	.	+	.	Parent=Os03t0241300-04
Chr03	irgsp1_rep	CDS	7482107	7483021	.	+	0	Parent=Os03t0241300-04
Chr03	irgsp1_rep	three_prime_UTR	7483022	7483234	.	+	.	Parent=Os03t0241300-04
Chr03	irgsp1_rep	mRNA	7480381	7483180	.	-	.	ID=Os03t0241400-00;Name=Os03t0241400-00;Locus_id=Os03g0241400;Note=Hypothetical protein.;Transcript_evidence=tplb0054a07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0241400-00
Chr03	irgsp1_rep	five_prime_UTR	7480979	7483180	.	-	.	Parent=Os03t0241400-00
Chr03	irgsp1_rep	CDS	7480631	7480978	.	-	0	Parent=Os03t0241400-00
Chr03	irgsp1_rep	three_prime_UTR	7480381	7480630	.	-	.	Parent=Os03t0241400-00
Chr03	irgsp1_rep	mRNA	7483344	7487296	.	-	.	ID=Os03t0241600-01;Name=Os03t0241600-01;Locus_id=Os03g0241600;CGSNL Gene Symbol=RLCK105;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 105;Oryzabase Gene Symbol Synonym(s)=OsRLCK105;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 105;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK120688 (DDBJ%2C Best hit);ORF_evidence=Q10PA1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: response to stress (GO:0006950),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),UspA (IPR006016),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013169B22;Oryzabase=18813;Expression=AK120688;TENOR=Os03t0241600-01;KEGG=Os03t0241600-01
Chr03	irgsp1_rep	five_prime_UTR	7486689	7487296	.	-	.	Parent=Os03t0241600-01
Chr03	irgsp1_rep	CDS	7486538	7486688	.	-	0	Parent=Os03t0241600-01
Chr03	irgsp1_rep	CDS	7486317	7486402	.	-	2	Parent=Os03t0241600-01
Chr03	irgsp1_rep	CDS	7486097	7486215	.	-	0	Parent=Os03t0241600-01
Chr03	irgsp1_rep	CDS	7485874	7485989	.	-	1	Parent=Os03t0241600-01
Chr03	irgsp1_rep	CDS	7485315	7485779	.	-	2	Parent=Os03t0241600-01
Chr03	irgsp1_rep	CDS	7484985	7485233	.	-	2	Parent=Os03t0241600-01
Chr03	irgsp1_rep	CDS	7484558	7484718	.	-	2	Parent=Os03t0241600-01
Chr03	irgsp1_rep	CDS	7484384	7484463	.	-	0	Parent=Os03t0241600-01
Chr03	irgsp1_rep	CDS	7484139	7484286	.	-	1	Parent=Os03t0241600-01
Chr03	irgsp1_rep	CDS	7483888	7484037	.	-	0	Parent=Os03t0241600-01
Chr03	irgsp1_rep	CDS	7483564	7483797	.	-	0	Parent=Os03t0241600-01
Chr03	irgsp1_rep	three_prime_UTR	7483344	7483563	.	-	.	Parent=Os03t0241600-01
Chr03	irgsp1_rep	mRNA	7483349	7484709	.	-	.	ID=Os03t0241600-02;Name=Os03t0241600-02;Locus_id=Os03g0241600;CGSNL Gene Symbol=RLCK105;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 105;Oryzabase Gene Symbol Synonym(s)=OsRLCK105;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 105;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK060019 (DDBJ%2C Best hit);ORF_evidence=NP_177852.2 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=006-302-G10;Oryzabase=18813;Expression=AK060019;TENOR=Os03t0241600-02;KEGG=Os03t0241600-02
Chr03	irgsp1_rep	five_prime_UTR	7484708	7484709	.	-	.	Parent=Os03t0241600-02
Chr03	irgsp1_rep	CDS	7484558	7484707	.	-	0	Parent=Os03t0241600-02
Chr03	irgsp1_rep	CDS	7484384	7484463	.	-	0	Parent=Os03t0241600-02
Chr03	irgsp1_rep	CDS	7484139	7484286	.	-	1	Parent=Os03t0241600-02
Chr03	irgsp1_rep	CDS	7483888	7484037	.	-	0	Parent=Os03t0241600-02
Chr03	irgsp1_rep	CDS	7483564	7483797	.	-	0	Parent=Os03t0241600-02
Chr03	irgsp1_rep	three_prime_UTR	7483349	7483563	.	-	.	Parent=Os03t0241600-02
Chr03	irgsp1_rep	mRNA	7497368	7499362	.	-	.	ID=Os03t0241800-00;Name=Os03t0241800-00;Locus_id=Os03g0241800;Note=Similar to predicted protein.;Transcript_evidence=BT084276 (DDBJ);ORF_evidence=NP_001049519.2 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os03t0241800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	7497368	7499362	.	-	0	Parent=Os03t0241800-00
Chr03	irgsp1_rep	mRNA	7500164	7503768	.	-	.	ID=Os03t0241900-02;Name=Os03t0241900-02;Locus_id=Os03g0241900;Note=Similar to Senescence-associated protein 12.;Transcript_evidence=AK111568 (DDBJ%2C Best hit),AK098994 (DDBJ%2C Best hit);ORF_evidence=Q10P98 (UniProt);NIAS_FLcDNA=J013072L11,J013096B20;Expression=AK111568;TENOR=Os03t0241900-02;KEGG=Os03t0241900-02
Chr03	irgsp1_rep	five_prime_UTR	7503702	7503768	.	-	.	Parent=Os03t0241900-02
Chr03	irgsp1_rep	CDS	7502698	7503701	.	-	0	Parent=Os03t0241900-02
Chr03	irgsp1_rep	CDS	7501692	7501858	.	-	1	Parent=Os03t0241900-02
Chr03	irgsp1_rep	CDS	7501236	7501320	.	-	2	Parent=Os03t0241900-02
Chr03	irgsp1_rep	CDS	7500430	7500622	.	-	1	Parent=Os03t0241900-02
Chr03	irgsp1_rep	three_prime_UTR	7500164	7500429	.	-	.	Parent=Os03t0241900-02
Chr03	irgsp1_rep	mRNA	7500167	7501320	.	-	.	ID=Os03t0241900-03;Name=Os03t0241900-03;Locus_id=Os03g0241900;Note=Similar to Senescence-associated protein%2C expressed.;Transcript_evidence=AK104874 (DDBJ%2C Best hit);ORF_evidence=Q10P98 (UniProt);InterPro=Senescence/spartin-associated (IPR009686);NIAS_FLcDNA=001-044-D10;Expression=AK104874;TENOR=Os03t0241900-03;KEGG=Os03t0241900-03
Chr03	irgsp1_rep	five_prime_UTR	7501319	7501320	.	-	.	Parent=Os03t0241900-03
Chr03	irgsp1_rep	CDS	7501236	7501318	.	-	0	Parent=Os03t0241900-03
Chr03	irgsp1_rep	CDS	7500430	7500622	.	-	1	Parent=Os03t0241900-03
Chr03	irgsp1_rep	three_prime_UTR	7500167	7500429	.	-	.	Parent=Os03t0241900-03
Chr03	irgsp1_rep	mRNA	7505884	7513338	.	+	.	ID=Os03t0242100-00;Name=Os03t0242100-00;Locus_id=Os03g0242100;CGSNL Gene Symbol=RAD17;CGSNL Gene Name=RADIATION SENSITIVE 17;Oryzabase Gene Symbol Synonym(s)=OsRAD17;Oryzabase Gene Name Synonym(s)=Radiation sensitive 17;Note=Conserved hypothetical protein.;Transcript_evidence=CT835146 (DDBJ%2C Best hit);ORF_evidence=Q10P97 (UniProt);Oryzabase=22651;TENOR=Os03t0242100-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	7505884	7506012	.	+	.	Parent=Os03t0242100-00
Chr03	irgsp1_rep	CDS	7506013	7506243	.	+	0	Parent=Os03t0242100-00
Chr03	irgsp1_rep	CDS	7506956	7507016	.	+	0	Parent=Os03t0242100-00
Chr03	irgsp1_rep	CDS	7507673	7507710	.	+	2	Parent=Os03t0242100-00
Chr03	irgsp1_rep	three_prime_UTR	7507711	7507759	.	+	.	Parent=Os03t0242100-00
Chr03	irgsp1_rep	three_prime_UTR	7507961	7508008	.	+	.	Parent=Os03t0242100-00
Chr03	irgsp1_rep	three_prime_UTR	7508654	7508710	.	+	.	Parent=Os03t0242100-00
Chr03	irgsp1_rep	three_prime_UTR	7509156	7509255	.	+	.	Parent=Os03t0242100-00
Chr03	irgsp1_rep	three_prime_UTR	7509443	7509753	.	+	.	Parent=Os03t0242100-00
Chr03	irgsp1_rep	three_prime_UTR	7509866	7510235	.	+	.	Parent=Os03t0242100-00
Chr03	irgsp1_rep	three_prime_UTR	7511313	7511444	.	+	.	Parent=Os03t0242100-00
Chr03	irgsp1_rep	three_prime_UTR	7511930	7512143	.	+	.	Parent=Os03t0242100-00
Chr03	irgsp1_rep	three_prime_UTR	7512218	7512278	.	+	.	Parent=Os03t0242100-00
Chr03	irgsp1_rep	three_prime_UTR	7512666	7513338	.	+	.	Parent=Os03t0242100-00
Chr03	irgsp1_rep	mRNA	7514225	7517543	.	+	.	ID=Os03t0242200-01;Name=Os03t0242200-01;Locus_id=Os03g0242200;Note=Ras GTPase family protein.;Transcript_evidence=AK071529 (DDBJ%2C Best hit);ORF_evidence=NP_001150916.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: small GTPase mediated signal transduction (GO:0007264),Cellular Component: intracellular (GO:0005622),Molecular Function: ATP binding (GO:0005524),Molecular Function: GTP binding (GO:0005525),Molecular Function: transcription factor binding (GO:0008134);InterPro=Small GTPase superfamily (IPR001806),RNA polymerase sigma factor 54%2C interaction (IPR002078),Small GTP-binding protein domain (IPR005225);NIAS_FLcDNA=J023104E16;Expression=AK071529;TENOR=Os03t0242200-01;KEGG=Os03t0242200-01
Chr03	irgsp1_rep	five_prime_UTR	7514225	7514389	.	+	.	Parent=Os03t0242200-01
Chr03	irgsp1_rep	CDS	7514390	7514498	.	+	0	Parent=Os03t0242200-01
Chr03	irgsp1_rep	CDS	7515538	7515629	.	+	2	Parent=Os03t0242200-01
Chr03	irgsp1_rep	CDS	7515712	7515853	.	+	0	Parent=Os03t0242200-01
Chr03	irgsp1_rep	CDS	7516193	7516497	.	+	2	Parent=Os03t0242200-01
Chr03	irgsp1_rep	CDS	7516688	7516741	.	+	0	Parent=Os03t0242200-01
Chr03	irgsp1_rep	CDS	7516821	7516948	.	+	0	Parent=Os03t0242200-01
Chr03	irgsp1_rep	CDS	7517104	7517290	.	+	1	Parent=Os03t0242200-01
Chr03	irgsp1_rep	three_prime_UTR	7517291	7517543	.	+	.	Parent=Os03t0242200-01
Chr03	irgsp1_rep	mRNA	7519754	7521478	.	-	.	ID=Os03t0242300-01;Name=Os03t0242300-01;Locus_id=Os03g0242300;Note=Hypothetical protein.;Transcript_evidence=AK065146 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J013002A22;Expression=AK065146;TENOR=Os03t0242300-01;KEGG=Os03t0242300-01
Chr03	irgsp1_rep	five_prime_UTR	7521014	7521478	.	-	.	Parent=Os03t0242300-01
Chr03	irgsp1_rep	CDS	7520327	7521013	.	-	0	Parent=Os03t0242300-01
Chr03	irgsp1_rep	three_prime_UTR	7519754	7520326	.	-	.	Parent=Os03t0242300-01
Chr03	irgsp1_rep	mRNA	7520304	7521305	.	+	.	ID=Os03t0242350-01;Name=Os03t0242350-01;Locus_id=Os03g0242350;Note=Non-protein coding transcript.;Transcript_evidence=AK069304 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023010M20;TENOR=Os03t0242350-01
Chr03	irgsp1_rep	exon	7520304	7521305	.	+	.	Parent=Os03t0242350-01
Chr03	irgsp1_rep	mRNA	7559117	7561984	.	-	.	ID=Os03t0242900-01;Name=Os03t0242900-01;Locus_id=Os03g0242900;Oryzabase Gene Symbol Synonym(s)=OsSub28%2C SUB28;Oryzabase Gene Name Synonym(s)=Subtilisin 28%2C SUBTILISIN 28;Note=Similar to SBT2 protein (Subtilisin-like protease).;Transcript_evidence=AK242948 (DDBJ%2C Best hit);ORF_evidence=NP_567972.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Proteinase inhibitor%2C propeptide (IPR009020),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);NIAS_FLcDNA=J090088C21;Oryzabase=20115;TENOR=Os03t0242900-01;KEGG=Os03t0242900-01
Chr03	irgsp1_rep	five_prime_UTR	7561921	7561984	.	-	.	Parent=Os03t0242900-01
Chr03	irgsp1_rep	CDS	7559578	7561920	.	-	0	Parent=Os03t0242900-01
Chr03	irgsp1_rep	three_prime_UTR	7559117	7559577	.	-	.	Parent=Os03t0242900-01
Chr03	irgsp1_rep	mRNA	7565328	7567774	.	-	.	ID=Os03t0243100-01;Name=Os03t0243100-01;Locus_id=Os03g0243100;CGSNL Gene Symbol=ADF5;CGSNL Gene Name=ACTIN DEPOLYMERIZING FACTOR 5;Oryzabase Gene Symbol Synonym(s)=OsADF5;Oryzabase Gene Name Synonym(s)=actin depolymerizing factor 5;Note=Similar to Actin-depolymerizing factor 5 (ADF-5) (AtADF5).;Transcript_evidence=AK104056 (DDBJ%2C Best hit),AK068859 (DDBJ%2C Best hit);ORF_evidence=Q10P87 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: actin binding (GO:0003779);InterPro=Actin-binding%2C cofilin/tropomyosin type (IPR002108);NIAS_FLcDNA=001-024-C02,J013170K24;Oryzabase=12504;TENOR=Os03t0243100-01
Chr03	irgsp1_rep	five_prime_UTR	7567610	7567774	.	-	.	Parent=Os03t0243100-01
Chr03	irgsp1_rep	CDS	7567589	7567609	.	-	0	Parent=Os03t0243100-01
Chr03	irgsp1_rep	CDS	7567233	7567492	.	-	0	Parent=Os03t0243100-01
Chr03	irgsp1_rep	CDS	7565742	7565892	.	-	1	Parent=Os03t0243100-01
Chr03	irgsp1_rep	three_prime_UTR	7565328	7565741	.	-	.	Parent=Os03t0243100-01
Chr03	irgsp1_rep	mRNA	7573271	7577555	.	-	.	ID=Os03t0243200-01;Name=Os03t0243200-01;Locus_id=Os03g0243200;Note=Conserved hypothetical protein.;Transcript_evidence=AK065972 (DDBJ%2C Best hit);ORF_evidence=Q10P86 (UniProt);NIAS_FLcDNA=J013049G06;TENOR=Os03t0243200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	7577429	7577555	.	-	.	Parent=Os03t0243200-01
Chr03	irgsp1_rep	CDS	7577420	7577428	.	-	0	Parent=Os03t0243200-01
Chr03	irgsp1_rep	CDS	7577024	7577338	.	-	0	Parent=Os03t0243200-01
Chr03	irgsp1_rep	CDS	7576433	7576687	.	-	0	Parent=Os03t0243200-01
Chr03	irgsp1_rep	three_prime_UTR	7575628	7576432	.	-	.	Parent=Os03t0243200-01
Chr03	irgsp1_rep	three_prime_UTR	7575300	7575510	.	-	.	Parent=Os03t0243200-01
Chr03	irgsp1_rep	three_prime_UTR	7574812	7575161	.	-	.	Parent=Os03t0243200-01
Chr03	irgsp1_rep	three_prime_UTR	7574638	7574729	.	-	.	Parent=Os03t0243200-01
Chr03	irgsp1_rep	three_prime_UTR	7574256	7574368	.	-	.	Parent=Os03t0243200-01
Chr03	irgsp1_rep	three_prime_UTR	7574079	7574164	.	-	.	Parent=Os03t0243200-01
Chr03	irgsp1_rep	three_prime_UTR	7573939	7573990	.	-	.	Parent=Os03t0243200-01
Chr03	irgsp1_rep	three_prime_UTR	7573271	7573855	.	-	.	Parent=Os03t0243200-01
Chr03	irgsp1_rep	mRNA	7573321	7577349	.	+	.	ID=Os03t0243250-00;Name=Os03t0243250-00;Locus_id=Os03g0243250;Note=Hypothetical protein.;Transcript_evidence=tplb0044a18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0243250-00
Chr03	irgsp1_rep	five_prime_UTR	7573321	7573862	.	+	.	Parent=Os03t0243250-00
Chr03	irgsp1_rep	five_prime_UTR	7574029	7574164	.	+	.	Parent=Os03t0243250-00
Chr03	irgsp1_rep	five_prime_UTR	7574256	7574372	.	+	.	Parent=Os03t0243250-00
Chr03	irgsp1_rep	five_prime_UTR	7574637	7574719	.	+	.	Parent=Os03t0243250-00
Chr03	irgsp1_rep	five_prime_UTR	7574798	7574922	.	+	.	Parent=Os03t0243250-00
Chr03	irgsp1_rep	five_prime_UTR	7575321	7575408	.	+	.	Parent=Os03t0243250-00
Chr03	irgsp1_rep	CDS	7575409	7575525	.	+	0	Parent=Os03t0243250-00
Chr03	irgsp1_rep	CDS	7575662	7575880	.	+	0	Parent=Os03t0243250-00
Chr03	irgsp1_rep	three_prime_UTR	7575881	7575961	.	+	.	Parent=Os03t0243250-00
Chr03	irgsp1_rep	three_prime_UTR	7576459	7576676	.	+	.	Parent=Os03t0243250-00
Chr03	irgsp1_rep	three_prime_UTR	7577008	7577349	.	+	.	Parent=Os03t0243250-00
Chr03	irgsp1_rep	mRNA	7579448	7583738	.	-	.	ID=Os03t0243300-01;Name=Os03t0243300-01;Locus_id=Os03g0243300;Oryzabase Gene Symbol Synonym(s)=OsS5a%2C S5a%2C OsRpn10%2C Rpn10;Oryzabase Gene Name Synonym(s)=Subunit 5 a%2C 26S proteasome subunit 5a%2C 19S regulatory particle non-ATPase subunit 10%2C RP non-ATPase 10%2C Regulatory Particle Non-ATPase 10%2C 26S prote- asome non-ATPase regulatory subunit 4;Note=Similar to 26S proteasome non-ATPase regulatory subunit 4 (26S proteasome regulatory subunit S5A) (Multiubiquitin chain binding protein).;Transcript_evidence=AK073601 (DDBJ%2C Best hit);ORF_evidence=NP_001150010.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=von Willebrand factor%2C type A (IPR002035),Ubiquitin interacting motif (IPR003903);NIAS_FLcDNA=J033046D23;Oryzabase=13667;Expression=AK073601;TENOR=Os03t0243300-01;KEGG=Os03t0243300-01
Chr03	irgsp1_rep	five_prime_UTR	7583669	7583738	.	-	.	Parent=Os03t0243300-01
Chr03	irgsp1_rep	CDS	7583657	7583668	.	-	0	Parent=Os03t0243300-01
Chr03	irgsp1_rep	CDS	7583443	7583556	.	-	0	Parent=Os03t0243300-01
Chr03	irgsp1_rep	CDS	7583233	7583338	.	-	0	Parent=Os03t0243300-01
Chr03	irgsp1_rep	CDS	7582883	7582997	.	-	2	Parent=Os03t0243300-01
Chr03	irgsp1_rep	CDS	7582607	7582816	.	-	1	Parent=Os03t0243300-01
Chr03	irgsp1_rep	CDS	7582217	7582523	.	-	1	Parent=Os03t0243300-01
Chr03	irgsp1_rep	CDS	7581196	7581322	.	-	0	Parent=Os03t0243300-01
Chr03	irgsp1_rep	CDS	7580861	7580958	.	-	2	Parent=Os03t0243300-01
Chr03	irgsp1_rep	CDS	7580699	7580767	.	-	0	Parent=Os03t0243300-01
Chr03	irgsp1_rep	CDS	7580067	7580117	.	-	0	Parent=Os03t0243300-01
Chr03	irgsp1_rep	three_prime_UTR	7579448	7580066	.	-	.	Parent=Os03t0243300-01
Chr03	irgsp1_rep	mRNA	7584049	7584916	.	+	.	ID=Os03t0243350-01;Name=Os03t0243350-01;Locus_id=Os03g0243350;Note=Conserved hypothetical protein.;Transcript_evidence=AK241336 (DDBJ%2C Best hit);ORF_evidence=NP_001173342.1 (RefSeq);NIAS_FLcDNA=J065144K02;TENOR=Os03t0243350-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	7584049	7584143	.	+	.	Parent=Os03t0243350-01
Chr03	irgsp1_rep	five_prime_UTR	7584214	7584426	.	+	.	Parent=Os03t0243350-01
Chr03	irgsp1_rep	five_prime_UTR	7584544	7584620	.	+	.	Parent=Os03t0243350-01
Chr03	irgsp1_rep	CDS	7584621	7584916	.	+	0	Parent=Os03t0243350-01
Chr03	irgsp1_rep	mRNA	7591870	7597405	.	+	.	ID=Os03t0243600-01;Name=Os03t0243600-01;Locus_id=Os03g0243600;RAP-DB Gene Symbol Synonym(s)=OsACBP5;RAP-DB Gene Name Synonym(s)=Acyl-CoA-binding protein 5;CGSNL Gene Symbol=ACBP5;CGSNL Gene Name=ACYL-COA-BINDING PROTEIN5;Oryzabase Gene Symbol Synonym(s)=OsACBP5;Oryzabase Gene Name Synonym(s)=Acyl-CoA-binding protein 5;Note=Acyl-CoA-binding protein %2C Stress response;Transcript_evidence=AK072916;ORF_evidence=Q10P83;GO=Molecular Function: fatty-acyl-CoA binding (GO:0000062);InterPro=FERM/acyl-CoA-binding protein%2C 3-helical bundle (IPR014352),Acyl-CoA-binding protein%2C ACBP (IPR000582);NIAS_FLcDNA=J023149A14;Manual Curation=February 16%2C 2015;Literature_PMID=24738983,21128943;Oryzabase=18295;TENOR=Os03t0243600-01;KEGG=Os03t0243600-01
Chr03	irgsp1_rep	five_prime_UTR	7591870	7592036	.	+	.	Parent=Os03t0243600-01
Chr03	irgsp1_rep	CDS	7592037	7593460	.	+	0	Parent=Os03t0243600-01
Chr03	irgsp1_rep	CDS	7595761	7595866	.	+	1	Parent=Os03t0243600-01
Chr03	irgsp1_rep	CDS	7595971	7596059	.	+	0	Parent=Os03t0243600-01
Chr03	irgsp1_rep	CDS	7596348	7596409	.	+	1	Parent=Os03t0243600-01
Chr03	irgsp1_rep	CDS	7597051	7597079	.	+	2	Parent=Os03t0243600-01
Chr03	irgsp1_rep	three_prime_UTR	7597080	7597405	.	+	.	Parent=Os03t0243600-01
Chr03	irgsp1_rep	mRNA	7601448	7603037	.	+	.	ID=Os03t0243700-01;Name=Os03t0243700-01;Locus_id=Os03g0243700;Note=Similar to Glycosyl hydrolase family 10 protein%2C expressed.;Transcript_evidence=AK059149 (DDBJ%2C Best hit);ORF_evidence=Q10P81 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 10 (IPR001000),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-023-B07;TENOR=Os03t0243700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	7601448	7601448	.	+	.	Parent=Os03t0243700-01
Chr03	irgsp1_rep	CDS	7601449	7601541	.	+	0	Parent=Os03t0243700-01
Chr03	irgsp1_rep	CDS	7601621	7601767	.	+	0	Parent=Os03t0243700-01
Chr03	irgsp1_rep	CDS	7601842	7602816	.	+	0	Parent=Os03t0243700-01
Chr03	irgsp1_rep	three_prime_UTR	7602817	7603037	.	+	.	Parent=Os03t0243700-01
Chr03	irgsp1_rep	mRNA	7601860	7602728	.	-	.	ID=Os03t0243750-00;Name=Os03t0243750-00;Locus_id=Os03g0243750;Note=Hypothetical protein.;Transcript_evidence=tplb0048l17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0243750-00
Chr03	irgsp1_rep	five_prime_UTR	7602727	7602728	.	-	.	Parent=Os03t0243750-00
Chr03	irgsp1_rep	CDS	7602043	7602726	.	-	0	Parent=Os03t0243750-00
Chr03	irgsp1_rep	three_prime_UTR	7601860	7602042	.	-	.	Parent=Os03t0243750-00
Chr03	irgsp1_rep	mRNA	7603131	7607537	.	+	.	ID=Os03t0243800-00;Name=Os03t0243800-00;Locus_id=Os03g0243800;Note=Nicotinamide N-methyltransferase%2C putative domain containing protein.;Transcript_evidence=tplb0014c18 (Wheat FLcDNA);ORF_evidence=Q10P78 (UniProt);InterPro=Nicotinamide N-methyltransferase%2C putative (IPR019410);TENOR=Os03t0243800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	7603131	7603135	.	+	.	Parent=Os03t0243800-00
Chr03	irgsp1_rep	CDS	7603136	7603277	.	+	0	Parent=Os03t0243800-00
Chr03	irgsp1_rep	CDS	7604190	7604412	.	+	2	Parent=Os03t0243800-00
Chr03	irgsp1_rep	CDS	7604746	7604825	.	+	1	Parent=Os03t0243800-00
Chr03	irgsp1_rep	CDS	7605437	7605497	.	+	2	Parent=Os03t0243800-00
Chr03	irgsp1_rep	CDS	7606238	7606353	.	+	1	Parent=Os03t0243800-00
Chr03	irgsp1_rep	CDS	7606519	7606651	.	+	2	Parent=Os03t0243800-00
Chr03	irgsp1_rep	CDS	7607110	7607401	.	+	1	Parent=Os03t0243800-00
Chr03	irgsp1_rep	three_prime_UTR	7607402	7607537	.	+	.	Parent=Os03t0243800-00
Chr03	irgsp1_rep	mRNA	7611453	7614083	.	-	.	ID=Os03t0243900-01;Name=Os03t0243900-01;Locus_id=Os03g0243900;Note=Similar to Thaumatin-like protein.;Transcript_evidence=AK100431 (DDBJ%2C Best hit);ORF_evidence=NP_001149439.1 (RefSeq);InterPro=Thaumatin%2C pathogenesis-related (IPR001938);NIAS_FLcDNA=J023088H12;Expression=AK100431;TENOR=Os03t0243900-01;KEGG=Os03t0243900-01
Chr03	irgsp1_rep	five_prime_UTR	7613809	7614083	.	-	.	Parent=Os03t0243900-01
Chr03	irgsp1_rep	CDS	7613751	7613808	.	-	0	Parent=Os03t0243900-01
Chr03	irgsp1_rep	CDS	7612952	7613642	.	-	2	Parent=Os03t0243900-01
Chr03	irgsp1_rep	CDS	7611887	7612148	.	-	1	Parent=Os03t0243900-01
Chr03	irgsp1_rep	three_prime_UTR	7611453	7611886	.	-	.	Parent=Os03t0243900-01
Chr03	irgsp1_rep	mRNA	7611919	7612989	.	+	.	ID=Os03t0243950-00;Name=Os03t0243950-00;Locus_id=Os03g0243950;Note=Hypothetical gene.;Transcript_evidence=BT085418 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0243950-00;KEGG=Os03t0243950-00
Chr03	irgsp1_rep	five_prime_UTR	7611919	7611919	.	+	.	Parent=Os03t0243950-00
Chr03	irgsp1_rep	CDS	7611920	7612174	.	+	0	Parent=Os03t0243950-00
Chr03	irgsp1_rep	three_prime_UTR	7612175	7612217	.	+	.	Parent=Os03t0243950-00
Chr03	irgsp1_rep	three_prime_UTR	7612330	7612989	.	+	.	Parent=Os03t0243950-00
Chr03	irgsp1_rep	mRNA	7615918	7618902	.	+	.	ID=Os03t0244000-01;Name=Os03t0244000-01;Locus_id=Os03g0244000;Note=Heat shock protein DnaJ%2C cysteine-rich region domain containing protein.;Transcript_evidence=AK061036 (DDBJ%2C Best hit);ORF_evidence=NP_177698.1 (RefSeq);GO=Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C cysteine-rich domain (IPR001305);NIAS_FLcDNA=006-205-B02;Oryzabase=23051;Expression=AK061036;TENOR=Os03t0244000-01;KEGG=Os03t0244000-01
Chr03	irgsp1_rep	five_prime_UTR	7615918	7616165	.	+	.	Parent=Os03t0244000-01
Chr03	irgsp1_rep	five_prime_UTR	7616257	7616274	.	+	.	Parent=Os03t0244000-01
Chr03	irgsp1_rep	CDS	7616275	7616424	.	+	0	Parent=Os03t0244000-01
Chr03	irgsp1_rep	CDS	7616507	7616590	.	+	0	Parent=Os03t0244000-01
Chr03	irgsp1_rep	CDS	7616775	7616826	.	+	0	Parent=Os03t0244000-01
Chr03	irgsp1_rep	CDS	7616935	7617091	.	+	2	Parent=Os03t0244000-01
Chr03	irgsp1_rep	CDS	7618542	7618563	.	+	1	Parent=Os03t0244000-01
Chr03	irgsp1_rep	three_prime_UTR	7618564	7618902	.	+	.	Parent=Os03t0244000-01
Chr03	irgsp1_rep	mRNA	7615960	7618902	.	+	.	ID=Os03t0244000-02;Name=Os03t0244000-02;Locus_id=Os03g0244000;Note=Heat shock protein DnaJ%2C cysteine-rich region domain containing protein.;Transcript_evidence=AK104109 (DDBJ%2C Best hit);ORF_evidence=NP_177698.1 (RefSeq);GO=Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C cysteine-rich domain (IPR001305);NIAS_FLcDNA=006-202-G02;Oryzabase=23051;Expression=AK104109;TENOR=Os03t0244000-02;KEGG=Os03t0244000-02
Chr03	irgsp1_rep	five_prime_UTR	7615960	7616165	.	+	.	Parent=Os03t0244000-02
Chr03	irgsp1_rep	five_prime_UTR	7616257	7616274	.	+	.	Parent=Os03t0244000-02
Chr03	irgsp1_rep	CDS	7616275	7616424	.	+	0	Parent=Os03t0244000-02
Chr03	irgsp1_rep	CDS	7616507	7616590	.	+	0	Parent=Os03t0244000-02
Chr03	irgsp1_rep	CDS	7616775	7616826	.	+	0	Parent=Os03t0244000-02
Chr03	irgsp1_rep	CDS	7616935	7617091	.	+	2	Parent=Os03t0244000-02
Chr03	irgsp1_rep	CDS	7618542	7618563	.	+	1	Parent=Os03t0244000-02
Chr03	irgsp1_rep	three_prime_UTR	7618564	7618902	.	+	.	Parent=Os03t0244000-02
Chr03	irgsp1_rep	mRNA	7626455	7628048	.	+	.	ID=Os03t0244200-01;Name=Os03t0244200-01;Locus_id=Os03g0244200;Note=Similar to thaumatin-like protein 1.;Transcript_evidence=AK107182 (DDBJ%2C Best hit);ORF_evidence=NP_001151120.1 (RefSeq);InterPro=Thaumatin%2C pathogenesis-related (IPR001938),Thaumatin%2C conserved site (IPR017949);NIAS_FLcDNA=002-124-H05;TENOR=Os03t0244200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	7626455	7626790	.	+	.	Parent=Os03t0244200-01
Chr03	irgsp1_rep	CDS	7626791	7626887	.	+	0	Parent=Os03t0244200-01
Chr03	irgsp1_rep	CDS	7627023	7627777	.	+	2	Parent=Os03t0244200-01
Chr03	irgsp1_rep	three_prime_UTR	7627778	7628048	.	+	.	Parent=Os03t0244200-01
Chr03	irgsp1_rep	mRNA	7626734	7629565	.	+	.	ID=Os03t0244200-02;Name=Os03t0244200-02;Locus_id=Os03g0244200;Note=Similar to Thaumatin-like protein.;Transcript_evidence=AK101837 (DDBJ%2C Best hit),AK105771 (DDBJ%2C Best hit);ORF_evidence=B6TTJ7 (UniProt);InterPro=Thaumatin%2C pathogenesis-related (IPR001938),Thaumatin%2C conserved site (IPR017949);NIAS_FLcDNA=J033069D02,001-202-E10;TENOR=Os03t0244200-02
Chr03	irgsp1_rep	five_prime_UTR	7626734	7626826	.	+	.	Parent=Os03t0244200-02
Chr03	irgsp1_rep	CDS	7626827	7626887	.	+	0	Parent=Os03t0244200-02
Chr03	irgsp1_rep	CDS	7627023	7627773	.	+	2	Parent=Os03t0244200-02
Chr03	irgsp1_rep	CDS	7628891	7629077	.	+	1	Parent=Os03t0244200-02
Chr03	irgsp1_rep	three_prime_UTR	7629078	7629565	.	+	.	Parent=Os03t0244200-02
Chr03	irgsp1_rep	mRNA	7627019	7627813	.	-	.	ID=Os03t0244333-00;Name=Os03t0244333-00;Locus_id=Os03g0244333;Note=Hypothetical gene.;Transcript_evidence=EU967040 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0244333-00;KEGG=Os03t0244333-00
Chr03	irgsp1_rep	five_prime_UTR	7627522	7627813	.	-	.	Parent=Os03t0244333-00
Chr03	irgsp1_rep	five_prime_UTR	7627453	7627465	.	-	.	Parent=Os03t0244333-00
Chr03	irgsp1_rep	CDS	7627063	7627452	.	-	0	Parent=Os03t0244333-00
Chr03	irgsp1_rep	three_prime_UTR	7627019	7627062	.	-	.	Parent=Os03t0244333-00
Chr03	irgsp1_rep	mRNA	7628831	7629070	.	-	.	ID=Os03t0244466-00;Name=Os03t0244466-00;Locus_id=Os03g0244466;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os03t0244466-00;KEGG=Os03t0244466-00
Chr03	irgsp1_rep	CDS	7628831	7629070	.	-	0	Parent=Os03t0244466-00
Chr03	irgsp1_rep	mRNA	7646649	7650520	.	+	.	ID=Os03t0244600-01;Name=Os03t0244600-01;Locus_id=Os03g0244600;Oryzabase Gene Symbol Synonym(s)=OsLAX2%2C OsRAU2%2C OsAUX3%2C LAX2%2C RAU2%2C AUX3;Oryzabase Gene Name Synonym(s)=like aux1-2%2C related to AUX1-2%2C auxin transporter 3;Note=Similar to AUX1-like protein.;Transcript_evidence=AK103524 (DDBJ%2C Best hit);ORF_evidence=B6TPT6 (UniProt);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=J033131K12;Oryzabase=11917;Expression=AK103524;TENOR=Os03t0244600-01;KEGG=Os03t0244600-01
Chr03	irgsp1_rep	five_prime_UTR	7646649	7646766	.	+	.	Parent=Os03t0244600-01
Chr03	irgsp1_rep	CDS	7646767	7646952	.	+	0	Parent=Os03t0244600-01
Chr03	irgsp1_rep	CDS	7647086	7647271	.	+	0	Parent=Os03t0244600-01
Chr03	irgsp1_rep	CDS	7647383	7647495	.	+	0	Parent=Os03t0244600-01
Chr03	irgsp1_rep	CDS	7647591	7647774	.	+	1	Parent=Os03t0244600-01
Chr03	irgsp1_rep	CDS	7647911	7648008	.	+	0	Parent=Os03t0244600-01
Chr03	irgsp1_rep	CDS	7648681	7649146	.	+	1	Parent=Os03t0244600-01
Chr03	irgsp1_rep	CDS	7649910	7650251	.	+	0	Parent=Os03t0244600-01
Chr03	irgsp1_rep	three_prime_UTR	7650252	7650520	.	+	.	Parent=Os03t0244600-01
Chr03	irgsp1_rep	mRNA	7648591	7650502	.	+	.	ID=Os03t0244600-02;Name=Os03t0244600-02;Locus_id=Os03g0244600;Oryzabase Gene Symbol Synonym(s)=OsLAX2%2C OsRAU2%2C OsAUX3%2C LAX2%2C RAU2%2C AUX3;Oryzabase Gene Name Synonym(s)=like aux1-2%2C related to AUX1-2%2C auxin transporter 3;Note=Similar to auxin transporter-like protein 3.;Transcript_evidence=AK101329 (DDBJ%2C Best hit);ORF_evidence=B6TPT6 (UniProt);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=J033034G17;Oryzabase=11917;Expression=AK101329;TENOR=Os03t0244600-02;KEGG=Os03t0244600-02
Chr03	irgsp1_rep	five_prime_UTR	7648591	7648591	.	+	.	Parent=Os03t0244600-02
Chr03	irgsp1_rep	CDS	7648592	7649146	.	+	0	Parent=Os03t0244600-02
Chr03	irgsp1_rep	CDS	7649910	7650251	.	+	0	Parent=Os03t0244600-02
Chr03	irgsp1_rep	three_prime_UTR	7650252	7650502	.	+	.	Parent=Os03t0244600-02
Chr03	irgsp1_rep	mRNA	7646760	7650156	.	-	.	ID=Os03t0244650-00;Name=Os03t0244650-00;Locus_id=Os03g0244650;Note=Hypothetical protein.;Transcript_evidence=tplb0034o11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0244650-00
Chr03	irgsp1_rep	five_prime_UTR	7650156	7650156	.	-	.	Parent=Os03t0244650-00
Chr03	irgsp1_rep	CDS	7649905	7650155	.	-	0	Parent=Os03t0244650-00
Chr03	irgsp1_rep	CDS	7648694	7649138	.	-	1	Parent=Os03t0244650-00
Chr03	irgsp1_rep	CDS	7647979	7648023	.	-	0	Parent=Os03t0244650-00
Chr03	irgsp1_rep	three_prime_UTR	7647887	7647978	.	-	.	Parent=Os03t0244650-00
Chr03	irgsp1_rep	three_prime_UTR	7647601	7647755	.	-	.	Parent=Os03t0244650-00
Chr03	irgsp1_rep	three_prime_UTR	7647380	7647503	.	-	.	Parent=Os03t0244650-00
Chr03	irgsp1_rep	three_prime_UTR	7647106	7647268	.	-	.	Parent=Os03t0244650-00
Chr03	irgsp1_rep	three_prime_UTR	7646760	7646975	.	-	.	Parent=Os03t0244650-00
Chr03	irgsp1_rep	mRNA	7656198	7658476	.	-	.	ID=Os03t0244700-01;Name=Os03t0244700-01;Locus_id=Os03g0244700;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK100620 (DDBJ%2C Best hit),AK100399 (DDBJ%2C Best hit);ORF_evidence=B6ST20 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023108F15,J023086N09;Expression=AK100620;TENOR=Os03t0244700-01;KEGG=Os03t0244700-01
Chr03	irgsp1_rep	five_prime_UTR	7658406	7658476	.	-	.	Parent=Os03t0244700-01
Chr03	irgsp1_rep	CDS	7656465	7658405	.	-	0	Parent=Os03t0244700-01
Chr03	irgsp1_rep	three_prime_UTR	7656198	7656464	.	-	.	Parent=Os03t0244700-01
Chr03	irgsp1_rep	mRNA	7658050	7658493	.	+	.	ID=Os03t0244750-00;Name=Os03t0244750-00;Locus_id=Os03g0244750;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001183257.1 (RefSeq);TENOR=Os03t0244750-00
Chr03	irgsp1_rep	CDS	7658050	7658493	.	+	0	Parent=Os03t0244750-00
Chr03	irgsp1_rep	mRNA	7660840	7661506	.	+	.	ID=Os03t0244800-00;Name=Os03t0244800-00;Locus_id=Os03g0244800;Note=Non-protein coding transcript.;Transcript_evidence=AK242633 (DDBJ%2C Secondary hit);ORF_evidence=NONE;TENOR=Os03t0244800-00
Chr03	irgsp1_rep	exon	7660840	7661506	.	+	.	Parent=Os03t0244800-00
Chr03	irgsp1_rep	mRNA	7669855	7670370	.	-	.	ID=Os03t0244950-00;Name=Os03t0244950-00;Locus_id=Os03g0244950;Note=Heat shock protein DnaJ%2C N-terminal domain containing protein.;Transcript_evidence=FP100687 (DDBJ);ORF_evidence=GeneMark;GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Heat shock protein DnaJ%2C conserved site (IPR018253);TENOR=Os03t0244950-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	7669855	7670370	.	-	0	Parent=Os03t0244950-00
Chr03	irgsp1_rep	mRNA	7671601	7675885	.	+	.	ID=Os03t0245100-01;Name=Os03t0245100-01;Locus_id=Os03g0245100;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK102253 (DDBJ%2C Best hit);ORF_evidence=B7E3L9 (UniProt);GO=Biological Process: lysine biosynthetic process via diaminopimelate (GO:0009089),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: chloroplast (GO:0009507),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: dihydrodipicolinate reductase activity (GO:0008839),Molecular Function: NADPH binding (GO:0070402);InterPro=Dihydrodipicolinate reductase%2C N-terminal (IPR000846),Dihydrodipicolinate reductase%2C bacterial/plant (IPR011770),Dihydrodipicolinate reductase%2C plant (IPR011859),NAD(P)-binding domain (IPR016040),Dihydrodipicolinate reductase%2C C-terminal (IPR022663);NIAS_FLcDNA=J033088H16;Expression=AK102253;TENOR=Os03t0245100-01;KEGG=Os03t0245100-01 (EC:1.3.1.26)
Chr03	irgsp1_rep	five_prime_UTR	7671601	7671680	.	+	.	Parent=Os03t0245100-01
Chr03	irgsp1_rep	CDS	7671681	7671842	.	+	0	Parent=Os03t0245100-01
Chr03	irgsp1_rep	CDS	7672772	7673009	.	+	0	Parent=Os03t0245100-01
Chr03	irgsp1_rep	CDS	7673663	7673796	.	+	2	Parent=Os03t0245100-01
Chr03	irgsp1_rep	CDS	7673908	7673982	.	+	0	Parent=Os03t0245100-01
Chr03	irgsp1_rep	CDS	7674243	7674344	.	+	0	Parent=Os03t0245100-01
Chr03	irgsp1_rep	CDS	7674722	7674831	.	+	0	Parent=Os03t0245100-01
Chr03	irgsp1_rep	CDS	7674902	7674989	.	+	1	Parent=Os03t0245100-01
Chr03	irgsp1_rep	CDS	7675079	7675147	.	+	0	Parent=Os03t0245100-01
Chr03	irgsp1_rep	three_prime_UTR	7675148	7675364	.	+	.	Parent=Os03t0245100-01
Chr03	irgsp1_rep	three_prime_UTR	7675603	7675885	.	+	.	Parent=Os03t0245100-01
Chr03	irgsp1_rep	mRNA	7671608	7675542	.	+	.	ID=Os03t0245100-02;Name=Os03t0245100-02;Locus_id=Os03g0245100;Note=Similar to Dihydrodipicolinate reductase.;Transcript_evidence=AK059346 (DDBJ%2C Best hit);ORF_evidence=B6TNS3 (UniProt);GO=Biological Process: lysine biosynthetic process via diaminopimelate (GO:0009089),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: dihydrodipicolinate reductase activity (GO:0008839),Molecular Function: NADPH binding (GO:0070402);InterPro=Dihydrodipicolinate reductase%2C N-terminal (IPR000846),Dihydrodipicolinate reductase%2C bacterial/plant (IPR011770),NAD(P)-binding domain (IPR016040),Dihydrodipicolinate reductase%2C C-terminal (IPR022663);NIAS_FLcDNA=001-026-C01;Expression=AK059346;TENOR=Os03t0245100-02;KEGG=Os03t0245100-02 (EC:1.3.1.26)
Chr03	irgsp1_rep	five_prime_UTR	7671608	7671680	.	+	.	Parent=Os03t0245100-02
Chr03	irgsp1_rep	CDS	7671681	7671842	.	+	0	Parent=Os03t0245100-02
Chr03	irgsp1_rep	CDS	7672772	7673009	.	+	0	Parent=Os03t0245100-02
Chr03	irgsp1_rep	CDS	7673663	7673796	.	+	2	Parent=Os03t0245100-02
Chr03	irgsp1_rep	CDS	7674243	7674344	.	+	0	Parent=Os03t0245100-02
Chr03	irgsp1_rep	CDS	7674722	7674831	.	+	0	Parent=Os03t0245100-02
Chr03	irgsp1_rep	CDS	7674902	7674989	.	+	1	Parent=Os03t0245100-02
Chr03	irgsp1_rep	CDS	7675079	7675147	.	+	0	Parent=Os03t0245100-02
Chr03	irgsp1_rep	three_prime_UTR	7675148	7675542	.	+	.	Parent=Os03t0245100-02
Chr03	irgsp1_rep	mRNA	7671683	7676854	.	+	.	ID=Os03t0245100-03;Name=Os03t0245100-03;Locus_id=Os03g0245100;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK069529 (DDBJ%2C Best hit);ORF_evidence=B7E3L9 (UniProt);GO=Biological Process: lysine biosynthetic process via diaminopimelate (GO:0009089),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: chloroplast (GO:0009507),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: dihydrodipicolinate reductase activity (GO:0008839),Molecular Function: NADPH binding (GO:0070402);InterPro=Dihydrodipicolinate reductase%2C N-terminal (IPR000846),Dihydrodipicolinate reductase%2C bacterial/plant (IPR011770),Dihydrodipicolinate reductase%2C plant (IPR011859),NAD(P)-binding domain (IPR016040),Dihydrodipicolinate reductase%2C C-terminal (IPR022663);NIAS_FLcDNA=J023019A15;Expression=AK069529;TENOR=Os03t0245100-03;KEGG=Os03t0245100-03 (EC:1.3.1.26)
Chr03	irgsp1_rep	five_prime_UTR	7671683	7671683	.	+	.	Parent=Os03t0245100-03
Chr03	irgsp1_rep	CDS	7671684	7671842	.	+	0	Parent=Os03t0245100-03
Chr03	irgsp1_rep	CDS	7672772	7673009	.	+	0	Parent=Os03t0245100-03
Chr03	irgsp1_rep	CDS	7673663	7673796	.	+	2	Parent=Os03t0245100-03
Chr03	irgsp1_rep	CDS	7673908	7673982	.	+	0	Parent=Os03t0245100-03
Chr03	irgsp1_rep	CDS	7674243	7674344	.	+	0	Parent=Os03t0245100-03
Chr03	irgsp1_rep	CDS	7674722	7674831	.	+	0	Parent=Os03t0245100-03
Chr03	irgsp1_rep	CDS	7674902	7674989	.	+	1	Parent=Os03t0245100-03
Chr03	irgsp1_rep	CDS	7675079	7675147	.	+	0	Parent=Os03t0245100-03
Chr03	irgsp1_rep	three_prime_UTR	7675148	7675364	.	+	.	Parent=Os03t0245100-03
Chr03	irgsp1_rep	three_prime_UTR	7675603	7675750	.	+	.	Parent=Os03t0245100-03
Chr03	irgsp1_rep	three_prime_UTR	7675972	7676854	.	+	.	Parent=Os03t0245100-03
Chr03	irgsp1_rep	mRNA	7675772	7677111	.	-	.	ID=Os03t0245200-01;Name=Os03t0245200-01;Locus_id=Os03g0245200;Note=Protein of unknown function DUF1210 family protein.;Transcript_evidence=AK062288 (DDBJ%2C Best hit);ORF_evidence=NP_001148616.1 (RefSeq);InterPro=Pollen Ole e 1 allergen/extensin (IPR006041);NIAS_FLcDNA=001-100-E04;Expression=AK062288;TENOR=Os03t0245200-01;KEGG=Os03t0245200-01
Chr03	irgsp1_rep	five_prime_UTR	7677074	7677111	.	-	.	Parent=Os03t0245200-01
Chr03	irgsp1_rep	CDS	7676908	7677073	.	-	0	Parent=Os03t0245200-01
Chr03	irgsp1_rep	CDS	7675994	7676541	.	-	2	Parent=Os03t0245200-01
Chr03	irgsp1_rep	three_prime_UTR	7675772	7675993	.	-	.	Parent=Os03t0245200-01
Chr03	irgsp1_rep	mRNA	7677693	7679130	.	-	.	ID=Os03t0245300-01;Name=Os03t0245300-01;Locus_id=Os03g0245300;Oryzabase Gene Symbol Synonym(s)=AGP%2C OsAGP;Oryzabase Gene Name Synonym(s)=Arabinogalactan protein;Note=Similar to Hydroxyproline-rich glycoprotein DZ-HRGP precursor.;Transcript_evidence=AK059409 (DDBJ%2C Best hit);ORF_evidence=NP_001149940.1 (RefSeq);InterPro=Pollen Ole e 1 allergen/extensin (IPR006041);NIAS_FLcDNA=001-027-C05;Oryzabase=23016;Expression=AK059409;TENOR=Os03t0245300-01;KEGG=Os03t0245300-01
Chr03	irgsp1_rep	five_prime_UTR	7679060	7679130	.	-	.	Parent=Os03t0245300-01
Chr03	irgsp1_rep	CDS	7678891	7679059	.	-	0	Parent=Os03t0245300-01
Chr03	irgsp1_rep	CDS	7677891	7678477	.	-	2	Parent=Os03t0245300-01
Chr03	irgsp1_rep	three_prime_UTR	7677693	7677890	.	-	.	Parent=Os03t0245300-01
Chr03	irgsp1_rep	mRNA	7681570	7682838	.	-	.	ID=Os03t0245500-01;Name=Os03t0245500-01;Locus_id=Os03g0245500;Note=Curculin-like (mannose-binding) lectin domain containing protein.;Transcript_evidence=AK064707 (DDBJ%2C Best hit);ORF_evidence=C8XPR9 (UniProt);GO=Molecular Function: sugar binding (GO:0005529);InterPro=Bulb-type lectin domain (IPR001480);NIAS_FLcDNA=002-118-A07;Expression=AK064707;TENOR=Os03t0245500-01;KEGG=Os03t0245500-01
Chr03	irgsp1_rep	five_prime_UTR	7682723	7682838	.	-	.	Parent=Os03t0245500-01
Chr03	irgsp1_rep	CDS	7681778	7682722	.	-	0	Parent=Os03t0245500-01
Chr03	irgsp1_rep	three_prime_UTR	7681570	7681777	.	-	.	Parent=Os03t0245500-01
Chr03	irgsp1_rep	mRNA	7686746	7688842	.	-	.	ID=Os03t0245700-02;Name=Os03t0245700-02;Locus_id=Os03g0245700;Note=Thiolase-like%2C subgroup domain containing protein.;Transcript_evidence=AK119222 (DDBJ%2C Best hit),AK112059 (DDBJ%2C Best hit);ORF_evidence=A2XEH5 (UniProt);NIAS_FLcDNA=001-047-E03,001-047-A11;Expression=AK119222;TENOR=Os03t0245700-02;KEGG=Os03t0245700-02
Chr03	irgsp1_rep	five_prime_UTR	7688718	7688842	.	-	.	Parent=Os03t0245700-02
Chr03	irgsp1_rep	CDS	7687119	7688717	.	-	0	Parent=Os03t0245700-02
Chr03	irgsp1_rep	three_prime_UTR	7686746	7687118	.	-	.	Parent=Os03t0245700-02
Chr03	irgsp1_rep	mRNA	7686713	7688840	.	-	.	ID=Os03t0245700-03;Name=Os03t0245700-03;Locus_id=Os03g0245700;Note=Similar to senescence-associated protein 15.;Transcript_evidence=AK111566 (DDBJ%2C Best hit);ORF_evidence=A2XEH5 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: metabolic process (GO:0008152),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=FAE1/Type III polyketide synthase-like protein (IPR013601),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);NIAS_FLcDNA=J013074J05;Expression=AK111566;TENOR=Os03t0245700-03;KEGG=Os03t0245700-03
Chr03	irgsp1_rep	five_prime_UTR	7688718	7688840	.	-	.	Parent=Os03t0245700-03
Chr03	irgsp1_rep	CDS	7687805	7688717	.	-	0	Parent=Os03t0245700-03
Chr03	irgsp1_rep	CDS	7687119	7687231	.	-	2	Parent=Os03t0245700-03
Chr03	irgsp1_rep	three_prime_UTR	7686713	7687118	.	-	.	Parent=Os03t0245700-03
Chr03	irgsp1_rep	mRNA	7697015	7698027	.	+	.	ID=Os03t0245800-02;Name=Os03t0245800-02;Locus_id=Os03g0245800;CGSNL Gene Symbol=HSP26;CGSNL Gene Name=26 KDA HEAT SHOCK PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsHSP26%2C Oshsp26%2C OsHSP26.7%2C HSP26.7;Oryzabase Gene Name Synonym(s)=26kDa heat shock protein;Note=Similar to Heat shock protein 26.;Transcript_evidence=AK120048 (DDBJ%2C Best hit),AK063618 (DDBJ%2C Best hit),AK120045 (DDBJ%2C Best hit);ORF_evidence=Q10P60 (UniProt);InterPro=Heat shock protein Hsp20 (IPR002068),HSP20-like chaperone (IPR008978);NIAS_FLcDNA=002-188-H09,001-118-E01,002-188-F09;Oryzabase=6749;Expression=AK120048;TENOR=Os03t0245800-02;KEGG=Os03t0245800-02
Chr03	irgsp1_rep	five_prime_UTR	7697015	7697131	.	+	.	Parent=Os03t0245800-02
Chr03	irgsp1_rep	CDS	7697132	7697854	.	+	0	Parent=Os03t0245800-02
Chr03	irgsp1_rep	three_prime_UTR	7697855	7698027	.	+	.	Parent=Os03t0245800-02
Chr03	irgsp1_rep	mRNA	7699096	7699502	.	+	.	ID=Os03t0245901-00;Name=Os03t0245901-00;Locus_id=Os03g0245901;Note=Hypothetical protein.;Transcript_evidence=EU941520 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0245901-00
Chr03	irgsp1_rep	five_prime_UTR	7699096	7699097	.	+	.	Parent=Os03t0245901-00
Chr03	irgsp1_rep	CDS	7699098	7699355	.	+	0	Parent=Os03t0245901-00
Chr03	irgsp1_rep	three_prime_UTR	7699356	7699502	.	+	.	Parent=Os03t0245901-00
Chr03	irgsp1_rep	mRNA	7706013	7707072	.	+	.	ID=Os03t0246050-01;Name=Os03t0246050-01;Locus_id=Os03g0246050;Note=Hypothetical gene.;Transcript_evidence=AK243572 (DDBJ%2C Best hit);ORF_evidence=NP_001173345.1 (RefSeq);NIAS_FLcDNA=J100082B16;TENOR=Os03t0246050-01
Chr03	irgsp1_rep	five_prime_UTR	7706013	7706725	.	+	.	Parent=Os03t0246050-01
Chr03	irgsp1_rep	CDS	7706726	7707072	.	+	0	Parent=Os03t0246050-01
Chr03	irgsp1_rep	mRNA	7707769	7710526	.	-	.	ID=Os03t0246100-01;Name=Os03t0246100-01;Locus_id=Os03g0246100;Note=Glycoside hydrolase%2C family 17 protein.;Transcript_evidence=AK106861 (DDBJ%2C Best hit);ORF_evidence=longestORF;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=002-118-C04;Expression=AK106861;TENOR=Os03t0246100-01;KEGG=Os03t0246100-01
Chr03	irgsp1_rep	five_prime_UTR	7710401	7710526	.	-	.	Parent=Os03t0246100-01
Chr03	irgsp1_rep	CDS	7709174	7710400	.	-	0	Parent=Os03t0246100-01
Chr03	irgsp1_rep	CDS	7707960	7708025	.	-	0	Parent=Os03t0246100-01
Chr03	irgsp1_rep	three_prime_UTR	7707769	7707959	.	-	.	Parent=Os03t0246100-01
Chr03	irgsp1_rep	mRNA	7713202	7715191	.	+	.	ID=Os03t0246150-00;Name=Os03t0246150-00;Locus_id=Os03g0246150;Note=Conserved hypothetical protein.;Transcript_evidence=AK331479 (DDBJ);ORF_evidence=B9F6R6 (UniProt);TENOR=Os03t0246150-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	7713202	7713339	.	+	.	Parent=Os03t0246150-00
Chr03	irgsp1_rep	five_prime_UTR	7714871	7714873	.	+	.	Parent=Os03t0246150-00
Chr03	irgsp1_rep	CDS	7714874	7715191	.	+	0	Parent=Os03t0246150-00
Chr03	irgsp1_rep	mRNA	7740991	7749358	.	+	.	ID=Os03t0246500-01;Name=Os03t0246500-01;Locus_id=Os03g0246500;Note=Protein of unknown function DUF869%2C plant family protein.;Transcript_evidence=AK066916 (DDBJ%2C Best hit);ORF_evidence=B9F6R7 (UniProt);InterPro=Protein of unknown function DUF869%2C plant (IPR008587);NIAS_FLcDNA=J013089E02;Expression=AK066916;TENOR=Os03t0246500-01;KEGG=Os03t0246500-01
Chr03	irgsp1_rep	five_prime_UTR	7740991	7741484	.	+	.	Parent=Os03t0246500-01
Chr03	irgsp1_rep	five_prime_UTR	7743742	7743755	.	+	.	Parent=Os03t0246500-01
Chr03	irgsp1_rep	CDS	7743756	7743845	.	+	0	Parent=Os03t0246500-01
Chr03	irgsp1_rep	CDS	7744587	7744782	.	+	0	Parent=Os03t0246500-01
Chr03	irgsp1_rep	CDS	7745017	7747372	.	+	2	Parent=Os03t0246500-01
Chr03	irgsp1_rep	CDS	7747474	7747534	.	+	1	Parent=Os03t0246500-01
Chr03	irgsp1_rep	CDS	7748520	7748939	.	+	0	Parent=Os03t0246500-01
Chr03	irgsp1_rep	three_prime_UTR	7748940	7749358	.	+	.	Parent=Os03t0246500-01
Chr03	irgsp1_rep	mRNA	7748945	7749267	.	+	.	ID=Os03t0246500-02;Name=Os03t0246500-02;Locus_id=Os03g0246500;Note=Non-protein coding transcript.;Transcript_evidence=AK105056 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-043-C06;TENOR=Os03t0246500-02
Chr03	irgsp1_rep	exon	7748945	7749267	.	+	.	Parent=Os03t0246500-02
Chr03	irgsp1_rep	mRNA	7749017	7749346	.	+	.	ID=Os03t0246500-03;Name=Os03t0246500-03;Locus_id=Os03g0246500;Note=Non-protein coding transcript.;Transcript_evidence=AK105050 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-042-B06;TENOR=Os03t0246500-03
Chr03	irgsp1_rep	exon	7749017	7749346	.	+	.	Parent=Os03t0246500-03
Chr03	irgsp1_rep	mRNA	7753164	7763728	.	-	.	ID=Os03t0246800-01;Name=Os03t0246800-01;Locus_id=Os03g0246800;Note=Similar to Guanine nucleotide-exchange protein GEP2.;Transcript_evidence=AK068209 (DDBJ%2C Best hit);ORF_evidence=Q8S565 (UniProt);GO=Biological Process: regulation of ARF protein signal transduction (GO:0032012),Cellular Component: intracellular (GO:0005622),Molecular Function: ARF guanyl-nucleotide exchange factor activity (GO:0005086);InterPro=SEC7-like (IPR000904);NIAS_FLcDNA=J013149H23;Expression=AK068209;TENOR=Os03t0246800-01;KEGG=Os03t0246800-01
Chr03	irgsp1_rep	five_prime_UTR	7763650	7763728	.	-	.	Parent=Os03t0246800-01
Chr03	irgsp1_rep	CDS	7762385	7763649	.	-	0	Parent=Os03t0246800-01
Chr03	irgsp1_rep	CDS	7760579	7760896	.	-	1	Parent=Os03t0246800-01
Chr03	irgsp1_rep	CDS	7760113	7760458	.	-	1	Parent=Os03t0246800-01
Chr03	irgsp1_rep	CDS	7759865	7759956	.	-	0	Parent=Os03t0246800-01
Chr03	irgsp1_rep	CDS	7755319	7755352	.	-	1	Parent=Os03t0246800-01
Chr03	irgsp1_rep	three_prime_UTR	7754990	7755318	.	-	.	Parent=Os03t0246800-01
Chr03	irgsp1_rep	three_prime_UTR	7753164	7753273	.	-	.	Parent=Os03t0246800-01
Chr03	irgsp1_rep	mRNA	7759662	7763564	.	-	.	ID=Os03t0246800-02;Name=Os03t0246800-02;Locus_id=Os03g0246800;Note=Similar to Guanine nucleotide-exchange protein GEP2.;Transcript_evidence=AK102770 (DDBJ%2C Best hit);ORF_evidence=Q8S565 (UniProt);GO=Biological Process: regulation of ARF protein signal transduction (GO:0032012),Cellular Component: intracellular (GO:0005622),Molecular Function: ARF guanyl-nucleotide exchange factor activity (GO:0005086);InterPro=SEC7-like (IPR000904),SEC7-like%2C alpha orthogonal bundle (IPR023394);NIAS_FLcDNA=J033107G10;TENOR=Os03t0246800-02
Chr03	irgsp1_rep	five_prime_UTR	7763563	7763564	.	-	.	Parent=Os03t0246800-02
Chr03	irgsp1_rep	CDS	7762385	7763562	.	-	0	Parent=Os03t0246800-02
Chr03	irgsp1_rep	CDS	7760579	7760896	.	-	1	Parent=Os03t0246800-02
Chr03	irgsp1_rep	CDS	7760113	7760458	.	-	1	Parent=Os03t0246800-02
Chr03	irgsp1_rep	CDS	7759662	7759956	.	-	0	Parent=Os03t0246800-02
Chr03	irgsp1_rep	mRNA	7760578	7763564	.	-	.	ID=Os03t0246800-03;Name=Os03t0246800-03;Locus_id=Os03g0246800;Note=Similar to Guanine nucleotide-exchange protein GEP2.;Transcript_evidence=AK070145 (DDBJ%2C Best hit);ORF_evidence=Q8S565 (UniProt);NIAS_FLcDNA=J023042O16;Expression=AK070145;TENOR=Os03t0246800-03;KEGG=Os03t0246800-03
Chr03	irgsp1_rep	five_prime_UTR	7763563	7763564	.	-	.	Parent=Os03t0246800-03
Chr03	irgsp1_rep	CDS	7762385	7763562	.	-	0	Parent=Os03t0246800-03
Chr03	irgsp1_rep	CDS	7760578	7760896	.	-	1	Parent=Os03t0246800-03
Chr03	irgsp1_rep	mRNA	7754762	7756545	.	-	.	ID=Os03t0246800-04;Name=Os03t0246800-04;Locus_id=Os03g0246800;Note=Similar to Guanine nucleotide-exchange protein GEP2.;Transcript_evidence=AK119229 (DDBJ%2C Best hit);ORF_evidence=Q8S565 (UniProt);NIAS_FLcDNA=001-101-A10;Expression=AK119229;TENOR=Os03t0246800-04;KEGG=Os03t0246800-04
Chr03	irgsp1_rep	five_prime_UTR	7756545	7756545	.	-	.	Parent=Os03t0246800-04
Chr03	irgsp1_rep	CDS	7756062	7756544	.	-	0	Parent=Os03t0246800-04
Chr03	irgsp1_rep	CDS	7755029	7755637	.	-	0	Parent=Os03t0246800-04
Chr03	irgsp1_rep	three_prime_UTR	7754762	7755028	.	-	.	Parent=Os03t0246800-04
Chr03	irgsp1_rep	mRNA	7767062	7768701	.	-	.	ID=Os03t0246900-00;Name=Os03t0246900-00;Locus_id=Os03g0246900;Note=Similar to LOB domain protein 16.;Transcript_evidence=ab initio prediction;ORF_evidence=XP_002875043.1 (RefSeq);InterPro=Lateral organ boundaries%2C LOB (IPR004883),Uncharacterised conserved protein UCP038127%2C LOB (IPR017394);TENOR=Os03t0246900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	7768333	7768701	.	-	0	Parent=Os03t0246900-00
Chr03	irgsp1_rep	CDS	7767062	7767520	.	-	0	Parent=Os03t0246900-00
Chr03	irgsp1_rep	mRNA	7773866	7779865	.	-	.	ID=Os03t0247000-01;Name=Os03t0247000-01;Locus_id=Os03g0247000;CGSNL Gene Symbol=CLPT;CGSNL Gene Name=CHLOROPLAST PROTEASE T;Oryzabase Gene Symbol Synonym(s)=OsClpT%2C ClpT;Oryzabase Gene Name Synonym(s)=plastidic caseinolytic protease T%2C chloroplast Clp T;Note=Clp%2C N-terminal domain containing protein.;Transcript_evidence=AK100847 (DDBJ%2C Best hit);ORF_evidence=B4G1I6 (UniProt);GO=Biological Process: protein metabolic process (GO:0019538);InterPro=Clp%2C N-terminal (IPR004176),Double Clp-N motif (IPR023150);NIAS_FLcDNA=J023123H08;Oryzabase=13362;Expression=AK100847;TENOR=Os03t0247000-01;KEGG=Os03t0247000-01
Chr03	irgsp1_rep	five_prime_UTR	7779792	7779865	.	-	.	Parent=Os03t0247000-01
Chr03	irgsp1_rep	CDS	7779580	7779791	.	-	0	Parent=Os03t0247000-01
Chr03	irgsp1_rep	CDS	7779345	7779380	.	-	1	Parent=Os03t0247000-01
Chr03	irgsp1_rep	CDS	7779169	7779278	.	-	1	Parent=Os03t0247000-01
Chr03	irgsp1_rep	CDS	7777944	7778123	.	-	2	Parent=Os03t0247000-01
Chr03	irgsp1_rep	CDS	7774309	7774436	.	-	2	Parent=Os03t0247000-01
Chr03	irgsp1_rep	CDS	7774186	7774218	.	-	0	Parent=Os03t0247000-01
Chr03	irgsp1_rep	three_prime_UTR	7773866	7774185	.	-	.	Parent=Os03t0247000-01
Chr03	irgsp1_rep	mRNA	7782444	7784795	.	+	.	ID=Os03t0247100-01;Name=Os03t0247100-01;Locus_id=Os03g0247100;Note=Conserved hypothetical protein.;Transcript_evidence=AK067733 (DDBJ%2C Best hit);ORF_evidence=B8AK14 (UniProt);NIAS_FLcDNA=J013114C24;Expression=AK067733;TENOR=Os03t0247100-01;KEGG=Os03t0247100-01
Chr03	irgsp1_rep	five_prime_UTR	7782444	7782469	.	+	.	Parent=Os03t0247100-01
Chr03	irgsp1_rep	CDS	7782470	7784416	.	+	0	Parent=Os03t0247100-01
Chr03	irgsp1_rep	three_prime_UTR	7784417	7784795	.	+	.	Parent=Os03t0247100-01
Chr03	irgsp1_rep	mRNA	7788798	7789593	.	+	.	ID=Os03t0247200-01;Name=Os03t0247200-01;Locus_id=Os03g0247200;CGSNL Gene Symbol=THI29;CGSNL Gene Name=THIONIN 29;Oryzabase Gene Symbol Synonym(s)=OsTHI29%2C OsTHION29%2C THION29;Oryzabase Gene Name Synonym(s)=Thionin 29;Note=Conserved hypothetical protein.;Transcript_evidence=AK121719 (DDBJ%2C Best hit);ORF_evidence=B9F6S3 (UniProt);NIAS_FLcDNA=J033079O20;Oryzabase=19269;Expression=AK121719;TENOR=Os03t0247200-01;KEGG=Os03t0247200-01
Chr03	irgsp1_rep	five_prime_UTR	7788798	7788866	.	+	.	Parent=Os03t0247200-01
Chr03	irgsp1_rep	CDS	7788867	7789304	.	+	0	Parent=Os03t0247200-01
Chr03	irgsp1_rep	three_prime_UTR	7789305	7789593	.	+	.	Parent=Os03t0247200-01
Chr03	irgsp1_rep	mRNA	7792692	7795626	.	+	.	ID=Os03t0247300-00;Name=Os03t0247300-00;Locus_id=Os03g0247300;Note=Protein of unknown function DUF1618 domain containing protein.;Transcript_evidence=CT835281 (DDBJ%2C Best hit);ORF_evidence=NP_001049550.1 (RefSeq);InterPro=Domain of unknown function DUF1618 (IPR011676);TENOR=Os03t0247300-00;KEGG=Os03t0247300-00
Chr03	irgsp1_rep	CDS	7792692	7793975	.	+	0	Parent=Os03t0247300-00
Chr03	irgsp1_rep	CDS	7795370	7795426	.	+	0	Parent=Os03t0247300-00
Chr03	irgsp1_rep	three_prime_UTR	7795427	7795626	.	+	.	Parent=Os03t0247300-00
Chr03	irgsp1_rep	mRNA	7796611	7796874	.	+	.	ID=Os03t0247400-00;Name=Os03t0247400-00;Locus_id=Os03g0247400;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9F6S4 (UniProt);TENOR=Os03t0247400-00;KEGG=Os03t0247400-00
Chr03	irgsp1_rep	CDS	7796611	7796874	.	+	0	Parent=Os03t0247400-00
Chr03	irgsp1_rep	mRNA	7800206	7801860	.	+	.	ID=Os03t0247600-01;Name=Os03t0247600-01;Locus_id=Os03g0247600;Note=Hypothetical conserved gene.;Transcript_evidence=AK065489 (DDBJ%2C Best hit);ORF_evidence=B8AK18 (UniProt);NIAS_FLcDNA=J013014C16;Expression=AK065489;TENOR=Os03t0247600-01;KEGG=Os03t0247600-01
Chr03	irgsp1_rep	five_prime_UTR	7800206	7801206	.	+	.	Parent=Os03t0247600-01
Chr03	irgsp1_rep	CDS	7801207	7801419	.	+	0	Parent=Os03t0247600-01
Chr03	irgsp1_rep	three_prime_UTR	7801420	7801860	.	+	.	Parent=Os03t0247600-01
Chr03	irgsp1_rep	mRNA	7800372	7801862	.	+	.	ID=Os03t0247600-02;Name=Os03t0247600-02;Locus_id=Os03g0247600;Note=Hypothetical conserved gene.;Transcript_evidence=AK059508 (DDBJ%2C Best hit);ORF_evidence=B8AK18 (UniProt);NIAS_FLcDNA=001-029-B01;TENOR=Os03t0247600-02;KEGG=Os03t0247600-02
Chr03	irgsp1_rep	five_prime_UTR	7800372	7800572	.	+	.	Parent=Os03t0247600-02
Chr03	irgsp1_rep	five_prime_UTR	7801085	7801206	.	+	.	Parent=Os03t0247600-02
Chr03	irgsp1_rep	CDS	7801207	7801419	.	+	0	Parent=Os03t0247600-02
Chr03	irgsp1_rep	three_prime_UTR	7801420	7801862	.	+	.	Parent=Os03t0247600-02
Chr03	irgsp1_rep	mRNA	7802434	7802697	.	+	.	ID=Os03t0247750-00;Name=Os03t0247750-00;Locus_id=Os03g0247750;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9F6S5 (UniProt);TENOR=Os03t0247750-00;KEGG=Os03t0247750-00
Chr03	irgsp1_rep	CDS	7802434	7802697	.	+	0	Parent=Os03t0247750-00
Chr03	irgsp1_rep	mRNA	7815147	7817732	.	+	.	ID=Os03t0247900-01;Name=Os03t0247900-01;Locus_id=Os03g0247900;CGSNL Gene Symbol=ACR9;CGSNL Gene Name=ACT DOMAIN REPEAT PROTEIN 9;Oryzabase Gene Symbol Synonym(s)=OsACR9;Oryzabase Gene Name Synonym(s)=ACT-domain repeat protein 9;Note=F5O11.14 (ACR8).;Transcript_evidence=AK243425 (DDBJ%2C Best hit);ORF_evidence=Q10P44 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: amino acid binding (GO:0016597);InterPro=Amino acid-binding ACT (IPR002912);NIAS_FLcDNA=J100067F18;Oryzabase=7259;TENOR=Os03t0247900-01;KEGG=Os03t0247900-01
Chr03	irgsp1_rep	five_prime_UTR	7815147	7815296	.	+	.	Parent=Os03t0247900-01
Chr03	irgsp1_rep	CDS	7815297	7815358	.	+	0	Parent=Os03t0247900-01
Chr03	irgsp1_rep	CDS	7815469	7816270	.	+	1	Parent=Os03t0247900-01
Chr03	irgsp1_rep	CDS	7816743	7816847	.	+	0	Parent=Os03t0247900-01
Chr03	irgsp1_rep	CDS	7817065	7817424	.	+	0	Parent=Os03t0247900-01
Chr03	irgsp1_rep	three_prime_UTR	7817425	7817732	.	+	.	Parent=Os03t0247900-01
Chr03	irgsp1_rep	mRNA	7819901	7827315	.	-	.	ID=Os03t0248000-02;Name=Os03t0248000-02;Locus_id=Os03g0248000;CGSNL Gene Symbol=ATG9A;CGSNL Gene Name=AUTOPHAGY ASSOCIATED GENE 9A;Oryzabase Gene Symbol Synonym(s)=OsATG9a;Oryzabase Gene Name Synonym(s)=autophagy 9a;Note=Autophagy protein 9 domain containing protein.;Transcript_evidence=AK100304 (DDBJ%2C Best hit),AK070612 (DDBJ%2C Best hit);ORF_evidence=Q3T8Z1 (UniProt);NIAS_FLcDNA=J023078D06,J023060I16;Oryzabase=9652;Expression=AK100304;TENOR=Os03t0248000-02;KEGG=Os03t0248000-02
Chr03	irgsp1_rep	five_prime_UTR	7827110	7827315	.	-	.	Parent=Os03t0248000-02
Chr03	irgsp1_rep	five_prime_UTR	7826343	7826398	.	-	.	Parent=Os03t0248000-02
Chr03	irgsp1_rep	CDS	7825768	7826342	.	-	0	Parent=Os03t0248000-02
Chr03	irgsp1_rep	CDS	7825363	7825683	.	-	1	Parent=Os03t0248000-02
Chr03	irgsp1_rep	CDS	7824479	7824701	.	-	1	Parent=Os03t0248000-02
Chr03	irgsp1_rep	CDS	7824097	7824276	.	-	0	Parent=Os03t0248000-02
Chr03	irgsp1_rep	CDS	7823794	7824000	.	-	0	Parent=Os03t0248000-02
Chr03	irgsp1_rep	CDS	7822812	7822889	.	-	0	Parent=Os03t0248000-02
Chr03	irgsp1_rep	CDS	7822667	7822737	.	-	0	Parent=Os03t0248000-02
Chr03	irgsp1_rep	CDS	7822457	7822567	.	-	1	Parent=Os03t0248000-02
Chr03	irgsp1_rep	CDS	7820125	7821067	.	-	1	Parent=Os03t0248000-02
Chr03	irgsp1_rep	three_prime_UTR	7819901	7820124	.	-	.	Parent=Os03t0248000-02
Chr03	irgsp1_rep	mRNA	7822349	7827203	.	-	.	ID=Os03t0248000-03;Name=Os03t0248000-03;Locus_id=Os03g0248000;CGSNL Gene Symbol=ATG9A;CGSNL Gene Name=AUTOPHAGY ASSOCIATED GENE 9A;Oryzabase Gene Symbol Synonym(s)=OsATG9a;Oryzabase Gene Name Synonym(s)=autophagy 9a;Note=Similar to Autophagy protein 9.;Transcript_evidence=AK071419 (DDBJ%2C Best hit);ORF_evidence=Q3T8Z4 (UniProt);InterPro=Autophagy-related protein 9 (IPR007241);NIAS_FLcDNA=J023093B20;Oryzabase=9652;Expression=AK071419;TENOR=Os03t0248000-03;KEGG=Os03t0248000-03
Chr03	irgsp1_rep	five_prime_UTR	7827110	7827203	.	-	.	Parent=Os03t0248000-03
Chr03	irgsp1_rep	five_prime_UTR	7826343	7826398	.	-	.	Parent=Os03t0248000-03
Chr03	irgsp1_rep	CDS	7825768	7826342	.	-	0	Parent=Os03t0248000-03
Chr03	irgsp1_rep	CDS	7825363	7825683	.	-	1	Parent=Os03t0248000-03
Chr03	irgsp1_rep	CDS	7824479	7824701	.	-	1	Parent=Os03t0248000-03
Chr03	irgsp1_rep	CDS	7824097	7824276	.	-	0	Parent=Os03t0248000-03
Chr03	irgsp1_rep	CDS	7823794	7824000	.	-	0	Parent=Os03t0248000-03
Chr03	irgsp1_rep	CDS	7822812	7822889	.	-	0	Parent=Os03t0248000-03
Chr03	irgsp1_rep	CDS	7822667	7822737	.	-	0	Parent=Os03t0248000-03
Chr03	irgsp1_rep	CDS	7822447	7822567	.	-	1	Parent=Os03t0248000-03
Chr03	irgsp1_rep	three_prime_UTR	7822349	7822446	.	-	.	Parent=Os03t0248000-03
Chr03	irgsp1_rep	mRNA	7832016	7833726	.	-	.	ID=Os03t0248200-01;Name=Os03t0248200-01;Locus_id=Os03g0248200;Note=Similar to CytoChrome P450 family protein%2C expressed.;Transcript_evidence=AK070050 (DDBJ%2C Best hit);ORF_evidence=Q10P40 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J023040I08;TENOR=Os03t0248200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	7833726	7833726	.	-	.	Parent=Os03t0248200-01
Chr03	irgsp1_rep	CDS	7832844	7833725	.	-	0	Parent=Os03t0248200-01
Chr03	irgsp1_rep	CDS	7832109	7832714	.	-	0	Parent=Os03t0248200-01
Chr03	irgsp1_rep	three_prime_UTR	7832016	7832108	.	-	.	Parent=Os03t0248200-01
Chr03	irgsp1_rep	mRNA	7832158	7833712	.	+	.	ID=Os03t0248225-00;Name=Os03t0248225-00;Locus_id=Os03g0248225;Note=Hypothetical protein.;Transcript_evidence=tplb0024g24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0248225-00
Chr03	irgsp1_rep	five_prime_UTR	7832158	7832723	.	+	.	Parent=Os03t0248225-00
Chr03	irgsp1_rep	five_prime_UTR	7832862	7832973	.	+	.	Parent=Os03t0248225-00
Chr03	irgsp1_rep	CDS	7832974	7833561	.	+	0	Parent=Os03t0248225-00
Chr03	irgsp1_rep	three_prime_UTR	7833562	7833712	.	+	.	Parent=Os03t0248225-00
Chr03	irgsp1_rep	mRNA	7834136	7839572	.	+	.	ID=Os03t0248250-00;Name=Os03t0248250-00;Locus_id=Os03g0248250;Note=Hypothetical conserved gene.;Transcript_evidence=tplb0015f16 (Wheat FLcDNA);ORF_evidence=Q9XHW2 (UniProt);TENOR=Os03t0248250-00;KEGG=Os03t0248250-00 (EC:3.2.2.21)
Chr03	irgsp1_rep	CDS	7834136	7834284	.	+	0	Parent=Os03t0248250-00
Chr03	irgsp1_rep	CDS	7839055	7839421	.	+	1	Parent=Os03t0248250-00
Chr03	irgsp1_rep	three_prime_UTR	7839422	7839572	.	+	.	Parent=Os03t0248250-00
Chr03	irgsp1_rep	mRNA	7840812	7841454	.	-	.	ID=Os03t0248300-01;Name=Os03t0248300-01;Locus_id=Os03g0248300;Note=Similar to CytoChrome P450 76C4 (EC 1.14.-.-).;Transcript_evidence=AK062535 (DDBJ%2C Best hit);ORF_evidence=Q10P38 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=001-104-F01;Expression=AK062535;TENOR=Os03t0248300-01;KEGG=Os03t0248300-01
Chr03	irgsp1_rep	five_prime_UTR	7841453	7841454	.	-	.	Parent=Os03t0248300-01
Chr03	irgsp1_rep	CDS	7840982	7841452	.	-	0	Parent=Os03t0248300-01
Chr03	irgsp1_rep	three_prime_UTR	7840812	7840981	.	-	.	Parent=Os03t0248300-01
Chr03	irgsp1_rep	mRNA	7840989	7841604	.	+	.	ID=Os03t0248400-00;Name=Os03t0248400-00;Locus_id=Os03g0248400;Note=Hypothetical protein.;Transcript_evidence=EU942896 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0248400-00
Chr03	irgsp1_rep	five_prime_UTR	7840989	7841122	.	+	.	Parent=Os03t0248400-00
Chr03	irgsp1_rep	CDS	7841123	7841512	.	+	0	Parent=Os03t0248400-00
Chr03	irgsp1_rep	three_prime_UTR	7841513	7841604	.	+	.	Parent=Os03t0248400-00
Chr03	irgsp1_rep	mRNA	7844778	7845420	.	-	.	ID=Os03t0248500-01;Name=Os03t0248500-01;Locus_id=Os03g0248500;Note=Cupredoxin domain containing protein.;Transcript_evidence=AK243476 (DDBJ%2C Best hit);ORF_evidence=NP_001173348.1 (RefSeq);NIAS_FLcDNA=J100072G22;TENOR=Os03t0248500-01;KEGG=Os03t0248500-01
Chr03	irgsp1_rep	five_prime_UTR	7845385	7845420	.	-	.	Parent=Os03t0248500-01
Chr03	irgsp1_rep	CDS	7844911	7845384	.	-	0	Parent=Os03t0248500-01
Chr03	irgsp1_rep	three_prime_UTR	7844778	7844910	.	-	.	Parent=Os03t0248500-01
Chr03	irgsp1_rep	mRNA	7848008	7852714	.	-	.	ID=Os03t0248600-01;Name=Os03t0248600-01;Locus_id=Os03g0248600;Oryzabase Gene Symbol Synonym(s)=OsEno2%2C Eno2;Oryzabase Gene Name Synonym(s)=enolase%2C enolase 2;Note=Similar to Enolase 2 (EC 4.2.1.11) (2-phosphoglycerate dehydratase 2) (2-phospho- D-glycerate hydro-lyase 2).;Transcript_evidence=AK073611 (DDBJ%2C Best hit);ORF_evidence=B8AK24 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Cellular Component: phosphopyruvate hydratase complex (GO:0000015),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: phosphopyruvate hydratase activity (GO:0004634);InterPro=Enolase (IPR000941),Enolase%2C conserved site (IPR020809),Enolase%2C C-terminal (IPR020810),Enolase%2C N-terminal (IPR020811);NIAS_FLcDNA=J033048H19;Oryzabase=16694;TENOR=Os03t0248600-01
Chr03	irgsp1_rep	five_prime_UTR	7852553	7852714	.	-	.	Parent=Os03t0248600-01
Chr03	irgsp1_rep	CDS	7852484	7852552	.	-	0	Parent=Os03t0248600-01
Chr03	irgsp1_rep	CDS	7851796	7851859	.	-	0	Parent=Os03t0248600-01
Chr03	irgsp1_rep	CDS	7851547	7851611	.	-	2	Parent=Os03t0248600-01
Chr03	irgsp1_rep	CDS	7850912	7850959	.	-	0	Parent=Os03t0248600-01
Chr03	irgsp1_rep	CDS	7850746	7850832	.	-	0	Parent=Os03t0248600-01
Chr03	irgsp1_rep	CDS	7850559	7850639	.	-	0	Parent=Os03t0248600-01
Chr03	irgsp1_rep	CDS	7850355	7850457	.	-	0	Parent=Os03t0248600-01
Chr03	irgsp1_rep	CDS	7850188	7850267	.	-	2	Parent=Os03t0248600-01
Chr03	irgsp1_rep	CDS	7850036	7850110	.	-	0	Parent=Os03t0248600-01
Chr03	irgsp1_rep	CDS	7849583	7849645	.	-	0	Parent=Os03t0248600-01
Chr03	irgsp1_rep	CDS	7849402	7849479	.	-	0	Parent=Os03t0248600-01
Chr03	irgsp1_rep	CDS	7849130	7849324	.	-	0	Parent=Os03t0248600-01
Chr03	irgsp1_rep	CDS	7848992	7849042	.	-	0	Parent=Os03t0248600-01
Chr03	irgsp1_rep	CDS	7848820	7848908	.	-	0	Parent=Os03t0248600-01
Chr03	irgsp1_rep	CDS	7848671	7848722	.	-	1	Parent=Os03t0248600-01
Chr03	irgsp1_rep	CDS	7848482	7848538	.	-	0	Parent=Os03t0248600-01
Chr03	irgsp1_rep	CDS	7848196	7848276	.	-	0	Parent=Os03t0248600-01
Chr03	irgsp1_rep	three_prime_UTR	7848008	7848195	.	-	.	Parent=Os03t0248600-01
Chr03	irgsp1_rep	mRNA	7847997	7852637	.	-	.	ID=Os03t0248600-02;Name=Os03t0248600-02;Locus_id=Os03g0248600;Oryzabase Gene Symbol Synonym(s)=OsEno2%2C Eno2;Oryzabase Gene Name Synonym(s)=enolase%2C enolase 2;Note=Similar to Enolase 2 (EC 4.2.1.11) (2-phosphoglycerate dehydratase 2) (2-phospho- D-glycerate hydro-lyase 2).;Transcript_evidence=AK099342 (DDBJ%2C Best hit),AK104877 (DDBJ%2C Best hit);ORF_evidence=B8AK24 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Cellular Component: phosphopyruvate hydratase complex (GO:0000015),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: phosphopyruvate hydratase activity (GO:0004634);InterPro=Enolase (IPR000941),Enolase%2C conserved site (IPR020809),Enolase%2C C-terminal (IPR020810),Enolase%2C N-terminal (IPR020811);NIAS_FLcDNA=J033025E02,001-044-E09;Oryzabase=16694;TENOR=Os03t0248600-02
Chr03	irgsp1_rep	five_prime_UTR	7852553	7852637	.	-	.	Parent=Os03t0248600-02
Chr03	irgsp1_rep	CDS	7852484	7852552	.	-	0	Parent=Os03t0248600-02
Chr03	irgsp1_rep	CDS	7851796	7851859	.	-	0	Parent=Os03t0248600-02
Chr03	irgsp1_rep	CDS	7851547	7851611	.	-	2	Parent=Os03t0248600-02
Chr03	irgsp1_rep	CDS	7850912	7850959	.	-	0	Parent=Os03t0248600-02
Chr03	irgsp1_rep	CDS	7850746	7850832	.	-	0	Parent=Os03t0248600-02
Chr03	irgsp1_rep	CDS	7850559	7850639	.	-	0	Parent=Os03t0248600-02
Chr03	irgsp1_rep	CDS	7850355	7850457	.	-	0	Parent=Os03t0248600-02
Chr03	irgsp1_rep	CDS	7850188	7850267	.	-	2	Parent=Os03t0248600-02
Chr03	irgsp1_rep	CDS	7850036	7850110	.	-	0	Parent=Os03t0248600-02
Chr03	irgsp1_rep	CDS	7849583	7849645	.	-	0	Parent=Os03t0248600-02
Chr03	irgsp1_rep	CDS	7849402	7849479	.	-	0	Parent=Os03t0248600-02
Chr03	irgsp1_rep	CDS	7849130	7849324	.	-	0	Parent=Os03t0248600-02
Chr03	irgsp1_rep	CDS	7848992	7849042	.	-	0	Parent=Os03t0248600-02
Chr03	irgsp1_rep	CDS	7848820	7848908	.	-	0	Parent=Os03t0248600-02
Chr03	irgsp1_rep	CDS	7848671	7848722	.	-	1	Parent=Os03t0248600-02
Chr03	irgsp1_rep	CDS	7848482	7848538	.	-	0	Parent=Os03t0248600-02
Chr03	irgsp1_rep	CDS	7848196	7848276	.	-	0	Parent=Os03t0248600-02
Chr03	irgsp1_rep	three_prime_UTR	7847997	7848195	.	-	.	Parent=Os03t0248600-02
Chr03	irgsp1_rep	mRNA	7850035	7850484	.	+	.	ID=Os03t0248766-00;Name=Os03t0248766-00;Locus_id=Os03g0248766;Note=Non-protein coding transcript.;Transcript_evidence=BT084318 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0248766-00
Chr03	irgsp1_rep	exon	7850035	7850112	.	+	.	Parent=Os03t0248766-00
Chr03	irgsp1_rep	exon	7850195	7850270	.	+	.	Parent=Os03t0248766-00
Chr03	irgsp1_rep	exon	7850364	7850484	.	+	.	Parent=Os03t0248766-00
Chr03	irgsp1_rep	mRNA	7871494	7873366	.	+	.	ID=Os03t0249100-01;Name=Os03t0249100-01;Locus_id=Os03g0249100;Note=Conserved hypothetical protein.;Transcript_evidence=AK106841 (DDBJ%2C Best hit);ORF_evidence=B8AK25 (UniProt);NIAS_FLcDNA=002-116-H06;Expression=AK106841;TENOR=Os03t0249100-01;KEGG=Os03t0249100-01
Chr03	irgsp1_rep	five_prime_UTR	7871494	7871789	.	+	.	Parent=Os03t0249100-01
Chr03	irgsp1_rep	CDS	7871790	7871834	.	+	0	Parent=Os03t0249100-01
Chr03	irgsp1_rep	CDS	7871913	7873205	.	+	0	Parent=Os03t0249100-01
Chr03	irgsp1_rep	three_prime_UTR	7873206	7873366	.	+	.	Parent=Os03t0249100-01
Chr03	irgsp1_rep	mRNA	7874537	7878425	.	+	.	ID=Os03t0249200-01;Name=Os03t0249200-01;Locus_id=Os03g0249200;Note=Class I peptide chain release factor domain containing protein.;Transcript_evidence=AK069944 (DDBJ%2C Best hit);ORF_evidence=NP_001148646.1 (RefSeq);GO=Biological Process: translational termination (GO:0006415),Molecular Function: translation release factor activity (GO:0003747);InterPro=Peptide chain release factor class I/class II (IPR000352);NIAS_FLcDNA=J023035H14;Expression=AK069944;TENOR=Os03t0249200-01;KEGG=Os03t0249200-01
Chr03	irgsp1_rep	five_prime_UTR	7874537	7874581	.	+	.	Parent=Os03t0249200-01
Chr03	irgsp1_rep	CDS	7874582	7874861	.	+	0	Parent=Os03t0249200-01
Chr03	irgsp1_rep	CDS	7876224	7876283	.	+	2	Parent=Os03t0249200-01
Chr03	irgsp1_rep	CDS	7876889	7876971	.	+	2	Parent=Os03t0249200-01
Chr03	irgsp1_rep	CDS	7877064	7877128	.	+	0	Parent=Os03t0249200-01
Chr03	irgsp1_rep	CDS	7877195	7877228	.	+	1	Parent=Os03t0249200-01
Chr03	irgsp1_rep	CDS	7877332	7877402	.	+	0	Parent=Os03t0249200-01
Chr03	irgsp1_rep	CDS	7877865	7877955	.	+	1	Parent=Os03t0249200-01
Chr03	irgsp1_rep	three_prime_UTR	7877956	7878025	.	+	.	Parent=Os03t0249200-01
Chr03	irgsp1_rep	three_prime_UTR	7878106	7878425	.	+	.	Parent=Os03t0249200-01
Chr03	irgsp1_rep	mRNA	7881242	7884214	.	+	.	ID=Os03t0249300-01;Name=Os03t0249300-01;Locus_id=Os03g0249300;Note=Nucleotide-sensitive chloride conductance regulator family protein.;Transcript_evidence=AK070179 (DDBJ%2C Best hit);ORF_evidence=B4FU22 (UniProt);GO=Biological Process: chloride transport (GO:0006821),Biological Process: cell volume homeostasis (GO:0006884);InterPro=Nucleotide-sensitive chloride conductance regulator (IPR003521);NIAS_FLcDNA=J023044M21;Expression=AK070179;TENOR=Os03t0249300-01;KEGG=Os03t0249300-01
Chr03	irgsp1_rep	five_prime_UTR	7881242	7881376	.	+	.	Parent=Os03t0249300-01
Chr03	irgsp1_rep	CDS	7881377	7881537	.	+	0	Parent=Os03t0249300-01
Chr03	irgsp1_rep	CDS	7881639	7881762	.	+	1	Parent=Os03t0249300-01
Chr03	irgsp1_rep	CDS	7882381	7882498	.	+	0	Parent=Os03t0249300-01
Chr03	irgsp1_rep	CDS	7883060	7883119	.	+	2	Parent=Os03t0249300-01
Chr03	irgsp1_rep	CDS	7883202	7883285	.	+	2	Parent=Os03t0249300-01
Chr03	irgsp1_rep	CDS	7883357	7883439	.	+	2	Parent=Os03t0249300-01
Chr03	irgsp1_rep	CDS	7883786	7883854	.	+	0	Parent=Os03t0249300-01
Chr03	irgsp1_rep	three_prime_UTR	7883855	7884214	.	+	.	Parent=Os03t0249300-01
Chr03	irgsp1_rep	mRNA	7884815	7886786	.	+	.	ID=Os03t0249400-01;Name=Os03t0249400-01;Locus_id=Os03g0249400;Oryzabase Gene Name Synonym(s)=Ribosomal protein S20;Note=Similar to 40S ribosomal protein S20 (S22) (Fragment).;Transcript_evidence=AK062522 (DDBJ%2C Best hit);ORF_evidence=B6T6T3 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: small ribosomal subunit (GO:0015935),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S10 (IPR001848),Ribosomal protein S10%2C eukaryotic/archaeal (IPR005729);NIAS_FLcDNA=001-104-D06;Oryzabase=17690;Expression=AK062522;TENOR=Os03t0249400-01;KEGG=Os03t0249400-01
Chr03	irgsp1_rep	five_prime_UTR	7884815	7884875	.	+	.	Parent=Os03t0249400-01
Chr03	irgsp1_rep	CDS	7884876	7885002	.	+	0	Parent=Os03t0249400-01
Chr03	irgsp1_rep	CDS	7885738	7885851	.	+	2	Parent=Os03t0249400-01
Chr03	irgsp1_rep	CDS	7886382	7886524	.	+	2	Parent=Os03t0249400-01
Chr03	irgsp1_rep	three_prime_UTR	7886525	7886786	.	+	.	Parent=Os03t0249400-01
Chr03	irgsp1_rep	mRNA	7889338	7891292	.	+	.	ID=Os03t0249500-01;Name=Os03t0249500-01;Locus_id=Os03g0249500;Oryzabase Gene Symbol Synonym(s)=OsUGlcAE1;Oryzabase Gene Name Synonym(s)=UDP-glucuronic acid 4-epimerase 1;Note=Similar to Nucleotide sugar epimerase-like protein (UDP-D-glucuronate 4- epimerase) (EC 5.1.3.6).;Transcript_evidence=AK121154 (DDBJ%2C Best hit);ORF_evidence=NP_182056.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: racemase and epimerase activity%2C acting on carbohydrates and derivatives (GO:0016857),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),Nucleotide sugar epimerase (IPR008089),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023078O05;Oryzabase=15782;Expression=AK121154;TENOR=Os03t0249500-01;KEGG=Os03t0249500-01 (EC:5.1.3.6)
Chr03	irgsp1_rep	five_prime_UTR	7889338	7889399	.	+	.	Parent=Os03t0249500-01
Chr03	irgsp1_rep	CDS	7889400	7890854	.	+	0	Parent=Os03t0249500-01
Chr03	irgsp1_rep	three_prime_UTR	7890855	7891292	.	+	.	Parent=Os03t0249500-01
Chr03	irgsp1_rep	mRNA	7907082	7907812	.	-	.	ID=Os03t0249700-01;Name=Os03t0249700-01;Locus_id=Os03g0249700;Note=Conserved hypothetical protein.;Transcript_evidence=AK120462 (DDBJ%2C Best hit);ORF_evidence=A2XEK7 (UniProt);NIAS_FLcDNA=J013107I18;TENOR=Os03t0249700-01
Chr03	irgsp1_rep	five_prime_UTR	7907656	7907812	.	-	.	Parent=Os03t0249700-01
Chr03	irgsp1_rep	CDS	7907263	7907655	.	-	0	Parent=Os03t0249700-01
Chr03	irgsp1_rep	three_prime_UTR	7907082	7907262	.	-	.	Parent=Os03t0249700-01
Chr03	irgsp1_rep	mRNA	7907082	7907675	.	-	.	ID=Os03t0249700-02;Name=Os03t0249700-02;Locus_id=Os03g0249700;Note=Conserved hypothetical protein.;Transcript_evidence=AK121219 (DDBJ%2C Best hit);ORF_evidence=A2XEK7 (UniProt);NIAS_FLcDNA=J023090G01;TENOR=Os03t0249700-02
Chr03	irgsp1_rep	five_prime_UTR	7907656	7907675	.	-	.	Parent=Os03t0249700-02
Chr03	irgsp1_rep	CDS	7907263	7907655	.	-	0	Parent=Os03t0249700-02
Chr03	irgsp1_rep	three_prime_UTR	7907082	7907262	.	-	.	Parent=Os03t0249700-02
Chr03	irgsp1_rep	mRNA	7911693	7914268	.	+	.	ID=Os03t0249900-01;Name=Os03t0249900-01;Locus_id=Os03g0249900;Note=Conserved hypothetical protein.;Transcript_evidence=AK058379 (DDBJ%2C Best hit);ORF_evidence=A2XEK8 (UniProt);NIAS_FLcDNA=001-014-H02;Expression=AK058379;TENOR=Os03t0249900-01;KEGG=Os03t0249900-01
Chr03	irgsp1_rep	five_prime_UTR	7911693	7911772	.	+	.	Parent=Os03t0249900-01
Chr03	irgsp1_rep	CDS	7911773	7912102	.	+	0	Parent=Os03t0249900-01
Chr03	irgsp1_rep	CDS	7912521	7912595	.	+	0	Parent=Os03t0249900-01
Chr03	irgsp1_rep	CDS	7912675	7912761	.	+	0	Parent=Os03t0249900-01
Chr03	irgsp1_rep	CDS	7912849	7912953	.	+	0	Parent=Os03t0249900-01
Chr03	irgsp1_rep	CDS	7913036	7913106	.	+	0	Parent=Os03t0249900-01
Chr03	irgsp1_rep	CDS	7913782	7914070	.	+	1	Parent=Os03t0249900-01
Chr03	irgsp1_rep	three_prime_UTR	7914071	7914268	.	+	.	Parent=Os03t0249900-01
Chr03	irgsp1_rep	mRNA	7913954	7914268	.	+	.	ID=Os03t0249900-02;Name=Os03t0249900-02;Locus_id=Os03g0249900;Note=Hypothetical conserved gene.;Transcript_evidence=AK059080 (DDBJ%2C Best hit);ORF_evidence=A2XEK8 (UniProt);NIAS_FLcDNA=001-022-A10;Expression=AK059080;TENOR=Os03t0249900-02;KEGG=Os03t0249900-02
Chr03	irgsp1_rep	CDS	7913954	7914070	.	+	0	Parent=Os03t0249900-02
Chr03	irgsp1_rep	three_prime_UTR	7914071	7914268	.	+	.	Parent=Os03t0249900-02
Chr03	irgsp1_rep	mRNA	7914611	7918255	.	-	.	ID=Os03t0250000-01;Name=Os03t0250000-01;Locus_id=Os03g0250000;CGSNL Gene Symbol=SCS1;CGSNL Gene Name=SNRK2-CALCIUM SENSOR 1;Oryzabase Gene Symbol Synonym(s)=OsSCS1;Oryzabase Gene Name Synonym(s)=SnRK2-calcium sensor 1;Note=Conserved hypothetical protein.;Transcript_evidence=AK121051 (DDBJ%2C Best hit);ORF_evidence=Q10P20 (UniProt);NIAS_FLcDNA=J023055G22;Oryzabase=21634;TENOR=Os03t0250000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	7916038	7918255	.	-	.	Parent=Os03t0250000-01
Chr03	irgsp1_rep	CDS	7915735	7916037	.	-	0	Parent=Os03t0250000-01
Chr03	irgsp1_rep	CDS	7915402	7915620	.	-	0	Parent=Os03t0250000-01
Chr03	irgsp1_rep	CDS	7915171	7915299	.	-	0	Parent=Os03t0250000-01
Chr03	irgsp1_rep	CDS	7914861	7915088	.	-	0	Parent=Os03t0250000-01
Chr03	irgsp1_rep	three_prime_UTR	7914611	7914860	.	-	.	Parent=Os03t0250000-01
Chr03	irgsp1_rep	mRNA	7914641	7916074	.	-	.	ID=Os03t0250000-02;Name=Os03t0250000-02;Locus_id=Os03g0250000;CGSNL Gene Symbol=SCS1;CGSNL Gene Name=SNRK2-CALCIUM SENSOR 1;Oryzabase Gene Symbol Synonym(s)=OsSCS1;Oryzabase Gene Name Synonym(s)=SnRK2-calcium sensor 1;Note=Conserved hypothetical protein.;Transcript_evidence=AK061120 (DDBJ%2C Best hit);ORF_evidence=Q10P21 (UniProt);NIAS_FLcDNA=006-207-G02;Oryzabase=21634;Expression=AK061120;TENOR=Os03t0250000-02;KEGG=Os03t0250000-02
Chr03	irgsp1_rep	five_prime_UTR	7916038	7916074	.	-	.	Parent=Os03t0250000-02
Chr03	irgsp1_rep	CDS	7915735	7916037	.	-	0	Parent=Os03t0250000-02
Chr03	irgsp1_rep	CDS	7915402	7915620	.	-	0	Parent=Os03t0250000-02
Chr03	irgsp1_rep	CDS	7915171	7915299	.	-	0	Parent=Os03t0250000-02
Chr03	irgsp1_rep	CDS	7914861	7915088	.	-	0	Parent=Os03t0250000-02
Chr03	irgsp1_rep	three_prime_UTR	7914641	7914860	.	-	.	Parent=Os03t0250000-02
Chr03	irgsp1_rep	mRNA	7929012	7933985	.	-	.	ID=Os03t0250200-01;Name=Os03t0250200-01;Locus_id=Os03g0250200;Note=TB2/DP1 and HVA22 related protein family protein.;Transcript_evidence=AK068940 (DDBJ%2C Best hit);ORF_evidence=Q10P18 (UniProt);InterPro=TB2/DP1/HVA22-related protein (IPR004345);NIAS_FLcDNA=J013169D22;Expression=AK068940;TENOR=Os03t0250200-01;KEGG=Os03t0250200-01
Chr03	irgsp1_rep	five_prime_UTR	7933753	7933985	.	-	.	Parent=Os03t0250200-01
Chr03	irgsp1_rep	five_prime_UTR	7933640	7933652	.	-	.	Parent=Os03t0250200-01
Chr03	irgsp1_rep	CDS	7933608	7933639	.	-	0	Parent=Os03t0250200-01
Chr03	irgsp1_rep	CDS	7932603	7932701	.	-	1	Parent=Os03t0250200-01
Chr03	irgsp1_rep	CDS	7932456	7932512	.	-	1	Parent=Os03t0250200-01
Chr03	irgsp1_rep	CDS	7932309	7932372	.	-	1	Parent=Os03t0250200-01
Chr03	irgsp1_rep	CDS	7931730	7932230	.	-	0	Parent=Os03t0250200-01
Chr03	irgsp1_rep	three_prime_UTR	7929669	7931729	.	-	.	Parent=Os03t0250200-01
Chr03	irgsp1_rep	three_prime_UTR	7929012	7929607	.	-	.	Parent=Os03t0250200-01
Chr03	irgsp1_rep	mRNA	7929031	7933882	.	-	.	ID=Os03t0250200-02;Name=Os03t0250200-02;Locus_id=Os03g0250200;Note=Similar to TB2/DP1%2C HVA22 family protein%2C expressed.;Transcript_evidence=AK058393 (DDBJ%2C Best hit);ORF_evidence=Q10P18 (UniProt);InterPro=TB2/DP1/HVA22-related protein (IPR004345);NIAS_FLcDNA=001-015-A09;Expression=AK058393;TENOR=Os03t0250200-02;KEGG=Os03t0250200-02
Chr03	irgsp1_rep	five_prime_UTR	7933753	7933882	.	-	.	Parent=Os03t0250200-02
Chr03	irgsp1_rep	five_prime_UTR	7933640	7933652	.	-	.	Parent=Os03t0250200-02
Chr03	irgsp1_rep	CDS	7933608	7933639	.	-	0	Parent=Os03t0250200-02
Chr03	irgsp1_rep	CDS	7932603	7932701	.	-	1	Parent=Os03t0250200-02
Chr03	irgsp1_rep	CDS	7932456	7932512	.	-	1	Parent=Os03t0250200-02
Chr03	irgsp1_rep	CDS	7932309	7932372	.	-	1	Parent=Os03t0250200-02
Chr03	irgsp1_rep	CDS	7932012	7932230	.	-	0	Parent=Os03t0250200-02
Chr03	irgsp1_rep	CDS	7929305	7929835	.	-	0	Parent=Os03t0250200-02
Chr03	irgsp1_rep	three_prime_UTR	7929031	7929304	.	-	.	Parent=Os03t0250200-02
Chr03	irgsp1_rep	mRNA	7938935	7939534	.	-	.	ID=Os03t0250301-00;Name=Os03t0250301-00;Locus_id=Os03g0250301;Oryzabase Gene Symbol Synonym(s)=OsHyPRP6%2C HyPRP6;Oryzabase Gene Name Synonym(s)=Extensin family protein%2C Hybrid Proline-Rich Protein 6;Note=Plant lipid transfer protein/hydrophobic protein%2C helical domain domain containing protein.;Transcript_evidence=FP098007 (DDBJ);ORF_evidence=longestORF;GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770);Oryzabase=21933;TENOR=Os03t0250301-00
Chr03	irgsp1_rep	five_prime_UTR	7939518	7939534	.	-	.	Parent=Os03t0250301-00
Chr03	irgsp1_rep	CDS	7938935	7939517	.	-	0	Parent=Os03t0250301-00
Chr03	irgsp1_rep	mRNA	7946478	7947180	.	-	.	ID=Os03t0250400-01;Name=Os03t0250400-01;Locus_id=Os03g0250400;Oryzabase Gene Symbol Synonym(s)=OsHyPRP7%2C HyPRP7;Oryzabase Gene Name Synonym(s)=Hybrid Proline-Rich Protein 7;Note=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor domain containing protein.;Transcript_evidence=AK121385 (DDBJ%2C Best hit);ORF_evidence=A2XEL2 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770);NIAS_FLcDNA=J023127J05;Oryzabase=23408;Expression=AK121385;TENOR=Os03t0250400-01;KEGG=Os03t0250400-01
Chr03	irgsp1_rep	five_prime_UTR	7947131	7947180	.	-	.	Parent=Os03t0250400-01
Chr03	irgsp1_rep	CDS	7946744	7947130	.	-	0	Parent=Os03t0250400-01
Chr03	irgsp1_rep	three_prime_UTR	7946478	7946743	.	-	.	Parent=Os03t0250400-01
Chr03	irgsp1_rep	mRNA	7965176	7966095	.	-	.	ID=Os03t0251000-03;Name=Os03t0251000-03;Locus_id=Os03g0251000;Oryzabase Gene Symbol Synonym(s)=OsHyPRP9%2C HyPRP9;Oryzabase Gene Name Synonym(s)=Hybrid Proline-Rich Protein 9;Note=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor domain containing protein.;Transcript_evidence=AK061370 (DDBJ%2C Best hit),AK100004 (DDBJ%2C Best hit),AK104253 (DDBJ%2C Best hit),AK104668 (DDBJ%2C Best hit),AK119184 (DDBJ%2C Best hit);ORF_evidence=A6N124 (UniProt);NIAS_FLcDNA=006-304-E01,J013135J02,006-309-B03,006-312-B01,001-039-G02;Oryzabase=23410;Expression=AK061370;TENOR=Os03t0251000-03;KEGG=Os03t0251000-03
Chr03	irgsp1_rep	five_prime_UTR	7966069	7966095	.	-	.	Parent=Os03t0251000-03
Chr03	irgsp1_rep	CDS	7965592	7966068	.	-	0	Parent=Os03t0251000-03
Chr03	irgsp1_rep	three_prime_UTR	7965176	7965591	.	-	.	Parent=Os03t0251000-03
Chr03	irgsp1_rep	mRNA	7976995	7979371	.	-	.	ID=Os03t0251350-01;Name=Os03t0251350-01;Locus_id=Os03g0251350;RAP-DB Gene Symbol Synonym(s)=OsHAP5C%2C OsNF-YC2;RAP-DB Gene Name Synonym(s)=Nuclear factor Y C2 subunit;CGSNL Gene Symbol=HAP5C;CGSNL Gene Name=HAP5C SUBUNIT OF CCAAT-BOX BINDING COMPLEX;Oryzabase Gene Symbol Synonym(s)=OsHAP5C%2C NF-YC%2C CBF-C%2C OsNF-YC2%2C Os-NF-YC2%2C NF-YC2%2C NFYC2%2C OsNF-YC4-1%2C NF-YC4-1;Oryzabase Gene Name Synonym(s)=Nuclear factor Y C2 subunit%2C Nuclear factor Y C subunit 2%2C NUCLEAR FACTOR-Y subunit C2%2C NUCLEAR FACTOR-Y subunit NF-YC2%2C NF-YC subunit 2%2C NF-YC family 2;Note=NUCLEAR FACTOR Y (NF-Y) transcription factor%2C Control of heading date;Transcript_evidence=CT836539 (Guangluai4);ORF_evidence=A6BLW4;GO=Molecular Function: protein heterodimerization activity (GO:0046982);InterPro=Histone-fold (IPR009072),Transcription factor CBF/NF-Y/archaeal histone domain (IPR003958);Manual Curation=January 25%2C 2019;Literature_PMID=30107076,26542958;Oryzabase=8493;TENOR=Os03t0251350-00;KEGG=Os03t0251350-00;Subcellular location=nucleus (GO:0005634)
Chr03	irgsp1_rep	five_prime_UTR	7979147	7979371	.	-	.	Parent=Os03t0251350-01
Chr03	irgsp1_rep	five_prime_UTR	7977930	7977986	.	-	.	Parent=Os03t0251350-01
Chr03	irgsp1_rep	CDS	7977189	7977929	.	-	0	Parent=Os03t0251350-01
Chr03	irgsp1_rep	three_prime_UTR	7976995	7977188	.	-	.	Parent=Os03t0251350-01
Chr03	irgsp1_rep	mRNA	7980614	7982643	.	-	.	ID=Os03t0251425-00;Name=Os03t0251425-00;Locus_id=Os03g0251425;Note=Similar to Histone-like transcription factor and archaeal histone family protein%2C expressed.;Transcript_evidence=AK374252 (DDBJ);ORF_evidence=Q10P13 (UniProt);TENOR=Os03t0251425-00
Chr03	irgsp1_rep	five_prime_UTR	7982292	7982643	.	-	.	Parent=Os03t0251425-00
Chr03	irgsp1_rep	CDS	7982290	7982291	.	-	0	Parent=Os03t0251425-00
Chr03	irgsp1_rep	CDS	7980614	7981046	.	-	1	Parent=Os03t0251425-00
Chr03	irgsp1_rep	mRNA	7982396	7989433	.	+	.	ID=Os03t0251500-01;Name=Os03t0251500-01;Locus_id=Os03g0251500;Note=Similar to T-cell immune regulator 1 transcript variant 3 (Fragment).;Transcript_evidence=AK119298 (DDBJ%2C Best hit),AK101151 (DDBJ%2C Best hit);ORF_evidence=Q33AF5 (UniProt);GO=Biological Process: ATP hydrolysis coupled proton transport (GO:0015991),Cellular Component: proton-transporting two-sector ATPase complex%2C proton-transporting domain (GO:0033177),Molecular Function: hydrogen ion transmembrane transporter activity (GO:0015078);InterPro=ATPase%2C V0/A0 complex%2C 116kDa subunit (IPR002490);NIAS_FLcDNA=001-130-E09,J033027C12;TENOR=Os03t0251500-01
Chr03	irgsp1_rep	five_prime_UTR	7982396	7982589	.	+	.	Parent=Os03t0251500-01
Chr03	irgsp1_rep	CDS	7982590	7982739	.	+	0	Parent=Os03t0251500-01
Chr03	irgsp1_rep	CDS	7983355	7983399	.	+	0	Parent=Os03t0251500-01
Chr03	irgsp1_rep	CDS	7983855	7983974	.	+	0	Parent=Os03t0251500-01
Chr03	irgsp1_rep	CDS	7984053	7984160	.	+	0	Parent=Os03t0251500-01
Chr03	irgsp1_rep	CDS	7984486	7984593	.	+	0	Parent=Os03t0251500-01
Chr03	irgsp1_rep	CDS	7984865	7985038	.	+	0	Parent=Os03t0251500-01
Chr03	irgsp1_rep	CDS	7985284	7985421	.	+	0	Parent=Os03t0251500-01
Chr03	irgsp1_rep	CDS	7985873	7985980	.	+	0	Parent=Os03t0251500-01
Chr03	irgsp1_rep	CDS	7986096	7986203	.	+	0	Parent=Os03t0251500-01
Chr03	irgsp1_rep	CDS	7986316	7986464	.	+	0	Parent=Os03t0251500-01
Chr03	irgsp1_rep	CDS	7987046	7987199	.	+	1	Parent=Os03t0251500-01
Chr03	irgsp1_rep	CDS	7987373	7987533	.	+	0	Parent=Os03t0251500-01
Chr03	irgsp1_rep	CDS	7987621	7987827	.	+	1	Parent=Os03t0251500-01
Chr03	irgsp1_rep	CDS	7987933	7988116	.	+	1	Parent=Os03t0251500-01
Chr03	irgsp1_rep	CDS	7988204	7988287	.	+	0	Parent=Os03t0251500-01
Chr03	irgsp1_rep	CDS	7988376	7988575	.	+	0	Parent=Os03t0251500-01
Chr03	irgsp1_rep	CDS	7988706	7988765	.	+	1	Parent=Os03t0251500-01
Chr03	irgsp1_rep	CDS	7988861	7989065	.	+	1	Parent=Os03t0251500-01
Chr03	irgsp1_rep	three_prime_UTR	7989066	7989433	.	+	.	Parent=Os03t0251500-01
Chr03	irgsp1_rep	mRNA	7989864	7992993	.	-	.	ID=Os03t0251600-00;Name=Os03t0251600-00;Locus_id=Os03g0251600;CGSNL Gene Symbol=NTMC2T4.2;CGSNL Gene Name=N-TERMINAL-TM-C2 DOMAIN PROTEIN 4.2;Oryzabase Gene Symbol Synonym(s)=OsNTMC2T4.2;Oryzabase Gene Name Synonym(s)=N-terminal-TM-C2 domain protein 4.2%2C N-terminal trans- membrane and C2 domain protein 4.2%2C NTMC2 type 4.2 protein%2C NTMC2 family gene 4.2;Note=Similar to integral membrane single C2 domain protein.;Transcript_evidence=EU946429 (DDBJ);ORF_evidence=XP_002465551.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),C2 membrane targeting protein (IPR018029),C2 region (IPR020477);Oryzabase=22128;TENOR=Os03t0251600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	7992960	7992993	.	-	.	Parent=Os03t0251600-00
Chr03	irgsp1_rep	CDS	7992897	7992959	.	-	0	Parent=Os03t0251600-00
Chr03	irgsp1_rep	CDS	7992271	7992372	.	-	0	Parent=Os03t0251600-00
Chr03	irgsp1_rep	CDS	7992061	7992111	.	-	0	Parent=Os03t0251600-00
Chr03	irgsp1_rep	CDS	7991787	7991907	.	-	0	Parent=Os03t0251600-00
Chr03	irgsp1_rep	CDS	7991578	7991696	.	-	2	Parent=Os03t0251600-00
Chr03	irgsp1_rep	CDS	7991332	7991430	.	-	0	Parent=Os03t0251600-00
Chr03	irgsp1_rep	CDS	7991139	7991219	.	-	0	Parent=Os03t0251600-00
Chr03	irgsp1_rep	CDS	7990955	7991040	.	-	0	Parent=Os03t0251600-00
Chr03	irgsp1_rep	CDS	7990588	7990813	.	-	1	Parent=Os03t0251600-00
Chr03	irgsp1_rep	CDS	7989864	7990502	.	-	0	Parent=Os03t0251600-00
Chr03	irgsp1_rep	mRNA	7998159	8000400	.	+	.	ID=Os03t0251700-00;Name=Os03t0251700-00;Locus_id=Os03g0251700;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=EU944300 (DDBJ);ORF_evidence=Q10P10 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os03t0251700-00;KEGG=Os03t0251700-00
Chr03	irgsp1_rep	CDS	7998159	8000189	.	+	0	Parent=Os03t0251700-00
Chr03	irgsp1_rep	three_prime_UTR	8000190	8000400	.	+	.	Parent=Os03t0251700-00
Chr03	irgsp1_rep	mRNA	8003090	8008237	.	-	.	ID=Os03t0251800-01;Name=Os03t0251800-01;Locus_id=Os03g0251800;Note=Conserved hypothetical protein.;Transcript_evidence=AK067333 (DDBJ%2C Best hit);ORF_evidence=Q6H623 (UniProt);NIAS_FLcDNA=J013104O03;Expression=AK067333;TENOR=Os03t0251800-01;KEGG=Os03t0251800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	8008063	8008237	.	-	.	Parent=Os03t0251800-01
Chr03	irgsp1_rep	CDS	8007700	8008062	.	-	0	Parent=Os03t0251800-01
Chr03	irgsp1_rep	three_prime_UTR	8006492	8007699	.	-	.	Parent=Os03t0251800-01
Chr03	irgsp1_rep	three_prime_UTR	8006178	8006339	.	-	.	Parent=Os03t0251800-01
Chr03	irgsp1_rep	three_prime_UTR	8005722	8005876	.	-	.	Parent=Os03t0251800-01
Chr03	irgsp1_rep	three_prime_UTR	8005231	8005571	.	-	.	Parent=Os03t0251800-01
Chr03	irgsp1_rep	three_prime_UTR	8004922	8005040	.	-	.	Parent=Os03t0251800-01
Chr03	irgsp1_rep	three_prime_UTR	8004611	8004727	.	-	.	Parent=Os03t0251800-01
Chr03	irgsp1_rep	three_prime_UTR	8004313	8004516	.	-	.	Parent=Os03t0251800-01
Chr03	irgsp1_rep	three_prime_UTR	8004006	8004215	.	-	.	Parent=Os03t0251800-01
Chr03	irgsp1_rep	three_prime_UTR	8003090	8003392	.	-	.	Parent=Os03t0251800-01
Chr03	irgsp1_rep	mRNA	8003074	8006766	.	-	.	ID=Os03t0251800-02;Name=Os03t0251800-02;Locus_id=Os03g0251800;Note=Similar to Possible OmpA family member precursor.;Transcript_evidence=AK073337 (DDBJ%2C Best hit);ORF_evidence=B6T7E5 (UniProt);GO=Biological Process: transcription initiation from RNA polymerase II promoter (GO:0006367),Biological Process: positive regulation of transcription%2C DNA-dependent (GO:0045893),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Transcription initiation factor IIF%2C alpha subunit (IPR008851),Transcription Factor IIF%2C Rap30/Rap74%2C interaction (IPR011039);NIAS_FLcDNA=J033025I20;TENOR=Os03t0251800-02
Chr03	irgsp1_rep	five_prime_UTR	8006672	8006766	.	-	.	Parent=Os03t0251800-02
Chr03	irgsp1_rep	CDS	8006492	8006671	.	-	0	Parent=Os03t0251800-02
Chr03	irgsp1_rep	CDS	8006178	8006339	.	-	0	Parent=Os03t0251800-02
Chr03	irgsp1_rep	CDS	8005722	8005876	.	-	0	Parent=Os03t0251800-02
Chr03	irgsp1_rep	CDS	8005231	8005571	.	-	1	Parent=Os03t0251800-02
Chr03	irgsp1_rep	CDS	8004922	8005040	.	-	2	Parent=Os03t0251800-02
Chr03	irgsp1_rep	CDS	8004611	8004727	.	-	0	Parent=Os03t0251800-02
Chr03	irgsp1_rep	CDS	8004313	8004516	.	-	0	Parent=Os03t0251800-02
Chr03	irgsp1_rep	CDS	8004006	8004215	.	-	0	Parent=Os03t0251800-02
Chr03	irgsp1_rep	CDS	8003297	8003392	.	-	0	Parent=Os03t0251800-02
Chr03	irgsp1_rep	three_prime_UTR	8003074	8003296	.	-	.	Parent=Os03t0251800-02
Chr03	irgsp1_rep	mRNA	8004057	8004729	.	+	.	ID=Os03t0251950-00;Name=Os03t0251950-00;Locus_id=Os03g0251950;Note=Hypothetical protein.;Transcript_evidence=BT016922 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0251950-00
Chr03	irgsp1_rep	five_prime_UTR	8004057	8004057	.	+	.	Parent=Os03t0251950-00
Chr03	irgsp1_rep	CDS	8004058	8004217	.	+	0	Parent=Os03t0251950-00
Chr03	irgsp1_rep	CDS	8004315	8004382	.	+	2	Parent=Os03t0251950-00
Chr03	irgsp1_rep	three_prime_UTR	8004383	8004503	.	+	.	Parent=Os03t0251950-00
Chr03	irgsp1_rep	three_prime_UTR	8004588	8004729	.	+	.	Parent=Os03t0251950-00
Chr03	irgsp1_rep	mRNA	8010885	8012566	.	-	.	ID=Os03t0252100-01;Name=Os03t0252100-01;Locus_id=Os03g0252100;Note=Alpha/beta hydrolase fold-3 domain containing protein.;Transcript_evidence=AK241082 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=J065073H04;TENOR=Os03t0252100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	8011517	8012566	.	-	0	Parent=Os03t0252100-01
Chr03	irgsp1_rep	three_prime_UTR	8010885	8011516	.	-	.	Parent=Os03t0252100-01
Chr03	irgsp1_rep	mRNA	8047380	8052536	.	-	.	ID=Os03t0252800-01;Name=Os03t0252800-01;Locus_id=Os03g0252800;Note=Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 domain containing protein.;Transcript_evidence=AK065537 (DDBJ%2C Best hit),AK067765 (DDBJ%2C Best hit);ORF_evidence=Q10P02 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferase%2C class I/classII (IPR004839),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J013026J17,J013120O07;Expression=AK065537;TENOR=Os03t0252800-01;KEGG=Os03t0252800-01 (EC:2.3.1.50)
Chr03	irgsp1_rep	five_prime_UTR	8052354	8052536	.	-	.	Parent=Os03t0252800-01
Chr03	irgsp1_rep	five_prime_UTR	8051609	8051659	.	-	.	Parent=Os03t0252800-01
Chr03	irgsp1_rep	CDS	8051497	8051608	.	-	0	Parent=Os03t0252800-01
Chr03	irgsp1_rep	CDS	8051321	8051415	.	-	2	Parent=Os03t0252800-01
Chr03	irgsp1_rep	CDS	8051120	8051211	.	-	0	Parent=Os03t0252800-01
Chr03	irgsp1_rep	CDS	8050037	8050130	.	-	1	Parent=Os03t0252800-01
Chr03	irgsp1_rep	CDS	8049891	8049963	.	-	0	Parent=Os03t0252800-01
Chr03	irgsp1_rep	CDS	8049673	8049805	.	-	2	Parent=Os03t0252800-01
Chr03	irgsp1_rep	CDS	8049087	8049261	.	-	1	Parent=Os03t0252800-01
Chr03	irgsp1_rep	CDS	8048802	8048942	.	-	0	Parent=Os03t0252800-01
Chr03	irgsp1_rep	CDS	8048531	8048626	.	-	0	Parent=Os03t0252800-01
Chr03	irgsp1_rep	CDS	8048303	8048444	.	-	0	Parent=Os03t0252800-01
Chr03	irgsp1_rep	CDS	8047891	8048018	.	-	2	Parent=Os03t0252800-01
Chr03	irgsp1_rep	CDS	8047629	8047805	.	-	0	Parent=Os03t0252800-01
Chr03	irgsp1_rep	three_prime_UTR	8047380	8047628	.	-	.	Parent=Os03t0252800-01
Chr03	irgsp1_rep	mRNA	8061598	8061988	.	-	.	ID=Os03t0252900-00;Name=Os03t0252900-00;Locus_id=Os03g0252900;Note=Similar to MYB-like transcription factor DIVARICATA.;Transcript_evidence=EU959169 (DDBJ);ORF_evidence=NP_001150749.1 (RefSeq);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),MYB-like (IPR017877);TENOR=Os03t0252900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	8061889	8061988	.	-	.	Parent=Os03t0252900-00
Chr03	irgsp1_rep	CDS	8061598	8061888	.	-	0	Parent=Os03t0252900-00
Chr03	irgsp1_rep	mRNA	8067630	8071826	.	-	.	ID=Os03t0253100-01;Name=Os03t0253100-01;Locus_id=Os03g0253100;Note=Phosphomevalonate kinase%2C  ERG8 domain containing protein.;Transcript_evidence=AK119618 (DDBJ%2C Best hit);ORF_evidence=NP_001149345.1 (RefSeq);GO=Biological Process: phosphorylation (GO:0016310),Molecular Function: ATP binding (GO:0005524),Molecular Function: kinase activity (GO:0016301);InterPro=Phosphomevalonate kinase%2C eukaryotic (IPR005916),GHMP kinase (IPR006204),GHMP kinase%2C C-terminal (IPR013750),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Phosphomevalonate kinase%2C ERG8 (IPR016005),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=002-117-G12;Expression=AK119618;TENOR=Os03t0253100-01;KEGG=Os03t0253100-01 (EC:2.7.4.2)
Chr03	irgsp1_rep	five_prime_UTR	8071695	8071826	.	-	.	Parent=Os03t0253100-01
Chr03	irgsp1_rep	CDS	8071687	8071694	.	-	0	Parent=Os03t0253100-01
Chr03	irgsp1_rep	CDS	8071450	8071600	.	-	1	Parent=Os03t0253100-01
Chr03	irgsp1_rep	CDS	8071258	8071356	.	-	0	Parent=Os03t0253100-01
Chr03	irgsp1_rep	CDS	8071043	8071154	.	-	0	Parent=Os03t0253100-01
Chr03	irgsp1_rep	CDS	8070877	8070929	.	-	2	Parent=Os03t0253100-01
Chr03	irgsp1_rep	CDS	8069786	8070181	.	-	0	Parent=Os03t0253100-01
Chr03	irgsp1_rep	CDS	8069574	8069675	.	-	0	Parent=Os03t0253100-01
Chr03	irgsp1_rep	CDS	8068746	8068973	.	-	0	Parent=Os03t0253100-01
Chr03	irgsp1_rep	CDS	8068241	8068363	.	-	0	Parent=Os03t0253100-01
Chr03	irgsp1_rep	CDS	8067805	8068071	.	-	0	Parent=Os03t0253100-01
Chr03	irgsp1_rep	three_prime_UTR	8067630	8067804	.	-	.	Parent=Os03t0253100-01
Chr03	irgsp1_rep	mRNA	8087161	8088952	.	+	.	ID=Os03t0253200-01;Name=Os03t0253200-01;Locus_id=Os03g0253200;CGSNL Gene Symbol=WAG;CGSNL Gene Name=WAVY ROOT GROWTH 1;Oryzabase Gene Symbol Synonym(s)=OsWAG;Oryzabase Gene Name Synonym(s)=WAVY ROOT GROWTH1;Note=Similar to WAG1%3B kinase.;Transcript_evidence=AK287631 (DDBJ%2C Best hit);ORF_evidence=Q43619 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J065073J24;Oryzabase=22830;TENOR=Os03t0253200-01;KEGG=Os03t0253200-01 (EC:2.7.11.1)
Chr03	irgsp1_rep	five_prime_UTR	8087161	8087205	.	+	.	Parent=Os03t0253200-01
Chr03	irgsp1_rep	CDS	8087206	8088732	.	+	0	Parent=Os03t0253200-01
Chr03	irgsp1_rep	three_prime_UTR	8088733	8088952	.	+	.	Parent=Os03t0253200-01
Chr03	irgsp1_rep	mRNA	8101572	8102858	.	-	.	ID=Os03t0253500-00;Name=Os03t0253500-00;Locus_id=Os03g0253500;Note=D111/G-patch domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001049580.2 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676);InterPro=D111/G-patch (IPR000467);TENOR=Os03t0253500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	8101572	8102858	.	-	0	Parent=Os03t0253500-00
Chr03	irgsp1_rep	mRNA	8106340	8108381	.	-	.	ID=Os03t0253600-01;Name=Os03t0253600-01;Locus_id=Os03g0253600;Note=Conserved hypothetical protein.;Transcript_evidence=AK119506 (DDBJ%2C Best hit);ORF_evidence=A2XEN0 (UniProt);NIAS_FLcDNA=001-134-F05;Expression=AK119506;TENOR=Os03t0253600-01;KEGG=Os03t0253600-01
Chr03	irgsp1_rep	five_prime_UTR	8108220	8108381	.	-	.	Parent=Os03t0253600-01
Chr03	irgsp1_rep	CDS	8107212	8108219	.	-	0	Parent=Os03t0253600-01
Chr03	irgsp1_rep	three_prime_UTR	8106340	8107211	.	-	.	Parent=Os03t0253600-01
Chr03	irgsp1_rep	mRNA	8107052	8108260	.	-	.	ID=Os03t0253600-02;Name=Os03t0253600-02;Locus_id=Os03g0253600;Note=Conserved hypothetical protein.;Transcript_evidence=AK061138 (DDBJ%2C Best hit);ORF_evidence=A2XEN0 (UniProt);NIAS_FLcDNA=006-208-B07;TENOR=Os03t0253600-02;KEGG=Os03t0253600-02
Chr03	irgsp1_rep	five_prime_UTR	8108220	8108260	.	-	.	Parent=Os03t0253600-02
Chr03	irgsp1_rep	CDS	8107212	8108219	.	-	0	Parent=Os03t0253600-02
Chr03	irgsp1_rep	three_prime_UTR	8107052	8107211	.	-	.	Parent=Os03t0253600-02
Chr03	irgsp1_rep	mRNA	8111200	8111425	.	+	.	ID=Os03t0253701-00;Name=Os03t0253701-00;Locus_id=Os03g0253701;Note=Non-protein coding transcript.;Transcript_evidence=CT835288 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os03t0253701-00
Chr03	irgsp1_rep	exon	8111200	8111425	.	+	.	Parent=Os03t0253701-00
Chr03	irgsp1_rep	mRNA	8112292	8117742	.	-	.	ID=Os03t0253800-01;Name=Os03t0253800-01;Locus_id=Os03g0253800;Note=Mitochondrial import inner membrane translocase%2C subunit Tim21 domain containing protein.;Transcript_evidence=AK073753 (DDBJ%2C Best hit);ORF_evidence=Q10NZ1 (UniProt);InterPro=Mitochondrial inner membrane translocase complex%2C subunit Tim21 (IPR013261);NIAS_FLcDNA=J033069J06;Expression=AK073753;TENOR=Os03t0253800-01;KEGG=Os03t0253800-01
Chr03	irgsp1_rep	five_prime_UTR	8117661	8117742	.	-	.	Parent=Os03t0253800-01
Chr03	irgsp1_rep	CDS	8117544	8117660	.	-	0	Parent=Os03t0253800-01
Chr03	irgsp1_rep	CDS	8116924	8116945	.	-	0	Parent=Os03t0253800-01
Chr03	irgsp1_rep	CDS	8115710	8115861	.	-	2	Parent=Os03t0253800-01
Chr03	irgsp1_rep	CDS	8114423	8114601	.	-	0	Parent=Os03t0253800-01
Chr03	irgsp1_rep	CDS	8113453	8113501	.	-	1	Parent=Os03t0253800-01
Chr03	irgsp1_rep	CDS	8113245	8113364	.	-	0	Parent=Os03t0253800-01
Chr03	irgsp1_rep	CDS	8112402	8112560	.	-	0	Parent=Os03t0253800-01
Chr03	irgsp1_rep	three_prime_UTR	8112292	8112401	.	-	.	Parent=Os03t0253800-01
Chr03	irgsp1_rep	mRNA	8112267	8117741	.	-	.	ID=Os03t0253800-02;Name=Os03t0253800-02;Locus_id=Os03g0253800;Note=Conserved hypothetical protein.;Transcript_evidence=AK120111 (DDBJ%2C Best hit);ORF_evidence=Q10NZ1 (UniProt);NIAS_FLcDNA=J013024I20;TENOR=Os03t0253800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	8116866	8117741	.	-	.	Parent=Os03t0253800-02
Chr03	irgsp1_rep	five_prime_UTR	8115833	8115861	.	-	.	Parent=Os03t0253800-02
Chr03	irgsp1_rep	CDS	8115710	8115832	.	-	0	Parent=Os03t0253800-02
Chr03	irgsp1_rep	CDS	8114419	8114601	.	-	0	Parent=Os03t0253800-02
Chr03	irgsp1_rep	three_prime_UTR	8113453	8114418	.	-	.	Parent=Os03t0253800-02
Chr03	irgsp1_rep	three_prime_UTR	8113245	8113364	.	-	.	Parent=Os03t0253800-02
Chr03	irgsp1_rep	three_prime_UTR	8112267	8112560	.	-	.	Parent=Os03t0253800-02
Chr03	irgsp1_rep	mRNA	8112292	8117261	.	-	.	ID=Os03t0253800-03;Name=Os03t0253800-03;Locus_id=Os03g0253800;Note=Mitochondrial inner membrane translocase complex%2C subunit Tim21 domain containing protein.;Transcript_evidence=AK070739 (DDBJ%2C Best hit);ORF_evidence=Q10NZ1 (UniProt);InterPro=Mitochondrial inner membrane translocase complex%2C subunit Tim21 (IPR013261);NIAS_FLcDNA=J023061J10;TENOR=Os03t0253800-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	8115833	8117261	.	-	.	Parent=Os03t0253800-03
Chr03	irgsp1_rep	CDS	8115710	8115832	.	-	0	Parent=Os03t0253800-03
Chr03	irgsp1_rep	CDS	8114423	8114601	.	-	0	Parent=Os03t0253800-03
Chr03	irgsp1_rep	CDS	8113453	8113501	.	-	1	Parent=Os03t0253800-03
Chr03	irgsp1_rep	CDS	8113245	8113364	.	-	0	Parent=Os03t0253800-03
Chr03	irgsp1_rep	CDS	8112402	8112560	.	-	0	Parent=Os03t0253800-03
Chr03	irgsp1_rep	three_prime_UTR	8112292	8112401	.	-	.	Parent=Os03t0253800-03
Chr03	irgsp1_rep	mRNA	8122290	8126074	.	-	.	ID=Os03t0254000-01;Name=Os03t0254000-01;Locus_id=Os03g0254000;Note=NB-ARC domain containing protein.;Transcript_evidence=AK242939 (DDBJ%2C Best hit);ORF_evidence=B8AKA0 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: protein binding (GO:0005515),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),Leucine-rich repeat (IPR001611),NB-ARC (IPR002182);NIAS_FLcDNA=J090087F12;TENOR=Os03t0254000-01;KEGG=Os03t0254000-01
Chr03	irgsp1_rep	five_prime_UTR	8126004	8126074	.	-	.	Parent=Os03t0254000-01
Chr03	irgsp1_rep	CDS	8124984	8126003	.	-	0	Parent=Os03t0254000-01
Chr03	irgsp1_rep	CDS	8122619	8124349	.	-	0	Parent=Os03t0254000-01
Chr03	irgsp1_rep	three_prime_UTR	8122290	8122618	.	-	.	Parent=Os03t0254000-01
Chr03	irgsp1_rep	mRNA	8130378	8132030	.	+	.	ID=Os03t0254200-00;Name=Os03t0254200-00;Locus_id=Os03g0254200;Note=Similar to predicted protein.;Transcript_evidence=CT835241 (DDBJ%2C Best hit);ORF_evidence=NP_001049585.1 (RefSeq);InterPro=Tryptophan/tyrosine permease (IPR018227);TENOR=Os03t0254200-00
Chr03	irgsp1_rep	five_prime_UTR	8130378	8130411	.	+	.	Parent=Os03t0254200-00
Chr03	irgsp1_rep	CDS	8130412	8130795	.	+	0	Parent=Os03t0254200-00
Chr03	irgsp1_rep	CDS	8131852	8132030	.	+	0	Parent=Os03t0254200-00
Chr03	irgsp1_rep	mRNA	8134007	8134226	.	+	.	ID=Os03t0254250-00;Name=Os03t0254250-00;Locus_id=Os03g0254250;Note=Non-protein coding transcript.;Transcript_evidence=CT835220 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os03t0254250-00
Chr03	irgsp1_rep	exon	8134007	8134226	.	+	.	Parent=Os03t0254250-00
Chr03	irgsp1_rep	mRNA	8152539	8154731	.	+	.	ID=Os03t0254400-01;Name=Os03t0254400-01;Locus_id=Os03g0254400;RAP-DB Gene Symbol Synonym(s)=OspPLAIIIalpha%2C pPLAIIIalpha;RAP-DB Gene Name Synonym(s)=Patatin-related phospholipase A III alpha;Oryzabase Gene Symbol Synonym(s)=OspPLAIIIalpha%2C pPLAIIIalpha;Oryzabase Gene Name Synonym(s)=Patatin-related phospholipase A III alpha;Note=Patatin-related phospholipase A%2C Modulation of longitudinal growth of vegetative tissues and seeds;Transcript_evidence=XM_015772654;ORF_evidence=Q10NY5;GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: metabolic process (GO:0008152);InterPro=Acyl transferase/acyl hydrolase/lysophospholipase (IPR016035),Patatin/Phospholipase A2-related (IPR002641);Manual Curation=June 3%2C 2016;Literature_PMID=26290597;Oryzabase=19872
Chr03	irgsp1_rep	five_prime_UTR	8152539	8152977	.	+	.	Parent=Os03t0254400-01
Chr03	irgsp1_rep	CDS	8152978	8154090	.	+	0	Parent=Os03t0254400-01
Chr03	irgsp1_rep	CDS	8154176	8154472	.	+	0	Parent=Os03t0254400-01
Chr03	irgsp1_rep	three_prime_UTR	8154473	8154731	.	+	.	Parent=Os03t0254400-01
Chr03	irgsp1_rep	mRNA	8152544	8154323	.	+	.	ID=Os03t0254400-02;Name=Os03t0254400-02;Locus_id=Os03g0254400;Oryzabase Gene Symbol Synonym(s)=OspPLAIIIalpha%2C pPLAIIIalpha;Oryzabase Gene Name Synonym(s)=Patatin-related phospholipase A III alpha;Note=Similar to patatin-like protein 3.;Transcript_evidence=CT835191 (DDBJ%2C Best hit);ORF_evidence=NP_001150435.1 (RefSeq);Oryzabase=19872
Chr03	irgsp1_rep	five_prime_UTR	8152544	8152977	.	+	.	Parent=Os03t0254400-02
Chr03	irgsp1_rep	CDS	8152978	8153206	.	+	0	Parent=Os03t0254400-02
Chr03	irgsp1_rep	CDS	8153814	8154090	.	+	2	Parent=Os03t0254400-02
Chr03	irgsp1_rep	CDS	8154176	8154275	.	+	1	Parent=Os03t0254400-02
Chr03	irgsp1_rep	three_prime_UTR	8154276	8154323	.	+	.	Parent=Os03t0254400-02
Chr03	irgsp1_rep	mRNA	8165841	8174895	.	-	.	ID=Os03t0254700-01;Name=Os03t0254700-01;Locus_id=Os03g0254700;Oryzabase Gene Symbol Synonym(s)=OsWD40-66%2C TPR3%2C OsTPR3%2C TPR1%2C OsTRP1%2C OsTPR3%2C OsTPL2%2C TPL2%2C OsTPL%2C TPL;Oryzabase Gene Name Synonym(s)=TOPLESS-RELATED PROTEIN 3%2C TOPLESS 2%2C topless-related 1%2C TOPLESS;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK111518 (DDBJ%2C Best hit);ORF_evidence=Q8H6S5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),LisH dimerisation motif (IPR006594),CTLH%2C C-terminal LisH motif (IPR006595),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J013002H05;Oryzabase=10747;Expression=AK111518;TENOR=Os03t0254700-01;KEGG=Os03t0254700-01
Chr03	irgsp1_rep	five_prime_UTR	8174618	8174895	.	-	.	Parent=Os03t0254700-01
Chr03	irgsp1_rep	five_prime_UTR	8174408	8174530	.	-	.	Parent=Os03t0254700-01
Chr03	irgsp1_rep	CDS	8174328	8174407	.	-	0	Parent=Os03t0254700-01
Chr03	irgsp1_rep	CDS	8174051	8174230	.	-	1	Parent=Os03t0254700-01
Chr03	irgsp1_rep	CDS	8173849	8173962	.	-	1	Parent=Os03t0254700-01
Chr03	irgsp1_rep	CDS	8173561	8173719	.	-	1	Parent=Os03t0254700-01
Chr03	irgsp1_rep	CDS	8172694	8172871	.	-	1	Parent=Os03t0254700-01
Chr03	irgsp1_rep	CDS	8172489	8172609	.	-	0	Parent=Os03t0254700-01
Chr03	irgsp1_rep	CDS	8172270	8172385	.	-	2	Parent=Os03t0254700-01
Chr03	irgsp1_rep	CDS	8171983	8172136	.	-	0	Parent=Os03t0254700-01
Chr03	irgsp1_rep	CDS	8171786	8171895	.	-	2	Parent=Os03t0254700-01
Chr03	irgsp1_rep	CDS	8171623	8171692	.	-	0	Parent=Os03t0254700-01
Chr03	irgsp1_rep	CDS	8171482	8171555	.	-	2	Parent=Os03t0254700-01
Chr03	irgsp1_rep	CDS	8171247	8171342	.	-	0	Parent=Os03t0254700-01
Chr03	irgsp1_rep	CDS	8171063	8171158	.	-	0	Parent=Os03t0254700-01
Chr03	irgsp1_rep	CDS	8170848	8170975	.	-	0	Parent=Os03t0254700-01
Chr03	irgsp1_rep	CDS	8170523	8170757	.	-	1	Parent=Os03t0254700-01
Chr03	irgsp1_rep	CDS	8170252	8170416	.	-	0	Parent=Os03t0254700-01
Chr03	irgsp1_rep	CDS	8170074	8170175	.	-	0	Parent=Os03t0254700-01
Chr03	irgsp1_rep	CDS	8169822	8169968	.	-	0	Parent=Os03t0254700-01
Chr03	irgsp1_rep	CDS	8168486	8168596	.	-	0	Parent=Os03t0254700-01
Chr03	irgsp1_rep	CDS	8168177	8168353	.	-	0	Parent=Os03t0254700-01
Chr03	irgsp1_rep	CDS	8167976	8168104	.	-	0	Parent=Os03t0254700-01
Chr03	irgsp1_rep	CDS	8167790	8167885	.	-	0	Parent=Os03t0254700-01
Chr03	irgsp1_rep	CDS	8167519	8167707	.	-	0	Parent=Os03t0254700-01
Chr03	irgsp1_rep	CDS	8167277	8167443	.	-	0	Parent=Os03t0254700-01
Chr03	irgsp1_rep	CDS	8166513	8166720	.	-	1	Parent=Os03t0254700-01
Chr03	irgsp1_rep	three_prime_UTR	8166452	8166512	.	-	.	Parent=Os03t0254700-01
Chr03	irgsp1_rep	three_prime_UTR	8165841	8166121	.	-	.	Parent=Os03t0254700-01
Chr03	irgsp1_rep	mRNA	8165827	8168532	.	-	.	ID=Os03t0254700-02;Name=Os03t0254700-02;Locus_id=Os03g0254700;Oryzabase Gene Symbol Synonym(s)=OsWD40-66%2C TPR3%2C OsTPR3%2C TPR1%2C OsTRP1%2C OsTPR3%2C OsTPL2%2C TPL2%2C OsTPL%2C TPL;Oryzabase Gene Name Synonym(s)=TOPLESS-RELATED PROTEIN 3%2C TOPLESS 2%2C topless-related 1%2C TOPLESS;Note=Similar to predicted protein.;Transcript_evidence=AK112052 (DDBJ%2C Best hit);ORF_evidence=Q8H6S5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=001-046-B01;Oryzabase=10747;Expression=AK112052;TENOR=Os03t0254700-02;KEGG=Os03t0254700-02
Chr03	irgsp1_rep	five_prime_UTR	8168531	8168532	.	-	.	Parent=Os03t0254700-02
Chr03	irgsp1_rep	CDS	8168486	8168530	.	-	0	Parent=Os03t0254700-02
Chr03	irgsp1_rep	CDS	8168177	8168353	.	-	0	Parent=Os03t0254700-02
Chr03	irgsp1_rep	CDS	8167976	8168104	.	-	0	Parent=Os03t0254700-02
Chr03	irgsp1_rep	CDS	8167790	8167885	.	-	0	Parent=Os03t0254700-02
Chr03	irgsp1_rep	CDS	8167519	8167707	.	-	0	Parent=Os03t0254700-02
Chr03	irgsp1_rep	CDS	8167277	8167443	.	-	0	Parent=Os03t0254700-02
Chr03	irgsp1_rep	CDS	8166513	8166720	.	-	1	Parent=Os03t0254700-02
Chr03	irgsp1_rep	three_prime_UTR	8166452	8166512	.	-	.	Parent=Os03t0254700-02
Chr03	irgsp1_rep	three_prime_UTR	8165827	8166121	.	-	.	Parent=Os03t0254700-02
Chr03	irgsp1_rep	mRNA	8177756	8181722	.	-	.	ID=Os03t0254800-01;Name=Os03t0254800-01;Locus_id=Os03g0254800;Oryzabase Gene Symbol Synonym(s)=CS%2C OsCS;Oryzabase Gene Name Synonym(s)=chorismate synthase;Note=Similar to Chorismate synthase 1%2C chloroplast precursor (EC 4.2.3.5) (5- enolpyruvylshikimate-3-phosphate phospholyase 1).;Transcript_evidence=AK099850 (DDBJ%2C Best hit);ORF_evidence=B8AKA5 (UniProt);GO=Biological Process: aromatic amino acid family biosynthetic process (GO:0009073),Molecular Function: chorismate synthase activity (GO:0004107);InterPro=Chorismate synthase (IPR000453),Chorismate synthase%2C conserved site (IPR020541);NIAS_FLcDNA=J013110C10;Oryzabase=16772;Expression=AK099850;TENOR=Os03t0254800-01;KEGG=Os03t0254800-01 (EC:4.2.3.5)
Chr03	irgsp1_rep	five_prime_UTR	8181668	8181722	.	-	.	Parent=Os03t0254800-01
Chr03	irgsp1_rep	CDS	8181532	8181667	.	-	0	Parent=Os03t0254800-01
Chr03	irgsp1_rep	CDS	8180869	8181019	.	-	2	Parent=Os03t0254800-01
Chr03	irgsp1_rep	CDS	8180635	8180711	.	-	1	Parent=Os03t0254800-01
Chr03	irgsp1_rep	CDS	8180472	8180530	.	-	2	Parent=Os03t0254800-01
Chr03	irgsp1_rep	CDS	8180208	8180291	.	-	0	Parent=Os03t0254800-01
Chr03	irgsp1_rep	CDS	8179959	8180051	.	-	0	Parent=Os03t0254800-01
Chr03	irgsp1_rep	CDS	8179677	8179757	.	-	0	Parent=Os03t0254800-01
Chr03	irgsp1_rep	CDS	8179457	8179588	.	-	0	Parent=Os03t0254800-01
Chr03	irgsp1_rep	CDS	8179141	8179243	.	-	0	Parent=Os03t0254800-01
Chr03	irgsp1_rep	CDS	8178938	8179032	.	-	2	Parent=Os03t0254800-01
Chr03	irgsp1_rep	CDS	8178732	8178797	.	-	0	Parent=Os03t0254800-01
Chr03	irgsp1_rep	CDS	8178381	8178465	.	-	0	Parent=Os03t0254800-01
Chr03	irgsp1_rep	CDS	8177988	8178142	.	-	2	Parent=Os03t0254800-01
Chr03	irgsp1_rep	three_prime_UTR	8177756	8177987	.	-	.	Parent=Os03t0254800-01
Chr03	irgsp1_rep	mRNA	8182249	8186746	.	-	.	ID=Os03t0254900-01;Name=Os03t0254900-01;Locus_id=Os03g0254900;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK100160 (DDBJ%2C Best hit);ORF_evidence=NP_566356.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J023020P04;Expression=AK100160;TENOR=Os03t0254900-01;KEGG=Os03t0254900-01
Chr03	irgsp1_rep	five_prime_UTR	8186336	8186746	.	-	.	Parent=Os03t0254900-01
Chr03	irgsp1_rep	CDS	8185767	8186335	.	-	0	Parent=Os03t0254900-01
Chr03	irgsp1_rep	CDS	8183146	8183647	.	-	1	Parent=Os03t0254900-01
Chr03	irgsp1_rep	CDS	8182678	8182899	.	-	0	Parent=Os03t0254900-01
Chr03	irgsp1_rep	three_prime_UTR	8182249	8182677	.	-	.	Parent=Os03t0254900-01
Chr03	irgsp1_rep	mRNA	8182277	8186633	.	-	.	ID=Os03t0254900-02;Name=Os03t0254900-02;Locus_id=Os03g0254900;Note=Similar to zinc finger (C3HC4-type RING finger) family protein.;Transcript_evidence=AK072343 (DDBJ%2C Best hit);ORF_evidence=NP_566356.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J023047F14;TENOR=Os03t0254900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	8186616	8186633	.	-	.	Parent=Os03t0254900-02
Chr03	irgsp1_rep	CDS	8186437	8186615	.	-	0	Parent=Os03t0254900-02
Chr03	irgsp1_rep	CDS	8185767	8186309	.	-	1	Parent=Os03t0254900-02
Chr03	irgsp1_rep	CDS	8183146	8183647	.	-	1	Parent=Os03t0254900-02
Chr03	irgsp1_rep	CDS	8182678	8182899	.	-	0	Parent=Os03t0254900-02
Chr03	irgsp1_rep	three_prime_UTR	8182277	8182677	.	-	.	Parent=Os03t0254900-02
Chr03	irgsp1_rep	mRNA	8191896	8195080	.	+	.	ID=Os03t0255000-01;Name=Os03t0255000-01;Locus_id=Os03g0255000;Note=FAR1 DNA binding domain domain containing protein.;Transcript_evidence=AK101625 (DDBJ%2C Best hit);ORF_evidence=Q10NX9 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=FAR1 DNA binding domain (IPR004330),Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);NIAS_FLcDNA=J033052M07;TENOR=Os03t0255000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	8191896	8191896	.	+	.	Parent=Os03t0255000-01
Chr03	irgsp1_rep	CDS	8191897	8194920	.	+	0	Parent=Os03t0255000-01
Chr03	irgsp1_rep	three_prime_UTR	8194921	8195080	.	+	.	Parent=Os03t0255000-01
Chr03	irgsp1_rep	mRNA	8196070	8201999	.	-	.	ID=Os03t0255100-01;Name=Os03t0255100-01;Locus_id=Os03g0255100;CGSNL Gene Symbol=BGAL8;CGSNL Gene Name=BETA-GALACTOSIDASE 8;Oryzabase Gene Symbol Synonym(s)=OsBgal8%2C OsBGal8;Oryzabase Gene Name Synonym(s)=Beta-galactosidase 6%2C Lactase 6;Note=Similar to Relative to SR12 protein (Fragment).;Transcript_evidence=AK067479 (DDBJ%2C Best hit);ORF_evidence=A3ABI3 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: sugar binding (GO:0005529),Molecular Function: cation binding (GO:0043169);InterPro=D-galactoside/L-rhamnose binding SUEL lectin domain (IPR000922),Glycoside hydrolase%2C family 35 (IPR001944),Galactose-binding domain-like (IPR008979),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 35%2C conserved site (IPR019801);NIAS_FLcDNA=J013107M10;Oryzabase=8296;Expression=AK067479;TENOR=Os03t0255100-01;KEGG=Os03t0255100-01
Chr03	irgsp1_rep	five_prime_UTR	8201993	8201999	.	-	.	Parent=Os03t0255100-01
Chr03	irgsp1_rep	CDS	8201513	8201992	.	-	0	Parent=Os03t0255100-01
Chr03	irgsp1_rep	CDS	8201268	8201363	.	-	0	Parent=Os03t0255100-01
Chr03	irgsp1_rep	CDS	8200593	8200705	.	-	0	Parent=Os03t0255100-01
Chr03	irgsp1_rep	CDS	8200198	8200501	.	-	1	Parent=Os03t0255100-01
Chr03	irgsp1_rep	CDS	8199885	8200079	.	-	0	Parent=Os03t0255100-01
Chr03	irgsp1_rep	CDS	8199668	8199755	.	-	0	Parent=Os03t0255100-01
Chr03	irgsp1_rep	CDS	8199263	8199381	.	-	2	Parent=Os03t0255100-01
Chr03	irgsp1_rep	CDS	8198904	8199071	.	-	0	Parent=Os03t0255100-01
Chr03	irgsp1_rep	CDS	8198579	8198796	.	-	0	Parent=Os03t0255100-01
Chr03	irgsp1_rep	CDS	8198352	8198458	.	-	1	Parent=Os03t0255100-01
Chr03	irgsp1_rep	CDS	8198114	8198223	.	-	2	Parent=Os03t0255100-01
Chr03	irgsp1_rep	CDS	8197906	8198013	.	-	0	Parent=Os03t0255100-01
Chr03	irgsp1_rep	CDS	8197649	8197756	.	-	0	Parent=Os03t0255100-01
Chr03	irgsp1_rep	CDS	8197261	8197472	.	-	0	Parent=Os03t0255100-01
Chr03	irgsp1_rep	CDS	8196627	8196963	.	-	1	Parent=Os03t0255100-01
Chr03	irgsp1_rep	CDS	8196441	8196548	.	-	0	Parent=Os03t0255100-01
Chr03	irgsp1_rep	three_prime_UTR	8196070	8196440	.	-	.	Parent=Os03t0255100-01
Chr03	irgsp1_rep	mRNA	8196137	8199033	.	-	.	ID=Os03t0255100-02;Name=Os03t0255100-02;Locus_id=Os03g0255100;CGSNL Gene Symbol=BGAL8;CGSNL Gene Name=BETA-GALACTOSIDASE 8;Oryzabase Gene Symbol Synonym(s)=OsBgal8%2C OsBGal8;Oryzabase Gene Name Synonym(s)=Beta-galactosidase 6%2C Lactase 6;Note=Similar to Beta-galactosidase.;Transcript_evidence=AK061989 (DDBJ%2C Best hit);ORF_evidence=Q10NX7 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: sugar binding (GO:0005529);InterPro=D-galactoside/L-rhamnose binding SUEL lectin domain (IPR000922),Glycoside hydrolase%2C family 35 (IPR001944),Galactose-binding domain-like (IPR008979);NIAS_FLcDNA=001-043-B09;Oryzabase=8296;Expression=AK061989;TENOR=Os03t0255100-02;KEGG=Os03t0255100-02
Chr03	irgsp1_rep	five_prime_UTR	8199033	8199033	.	-	.	Parent=Os03t0255100-02
Chr03	irgsp1_rep	CDS	8198904	8199032	.	-	0	Parent=Os03t0255100-02
Chr03	irgsp1_rep	CDS	8198579	8198796	.	-	0	Parent=Os03t0255100-02
Chr03	irgsp1_rep	CDS	8198352	8198458	.	-	1	Parent=Os03t0255100-02
Chr03	irgsp1_rep	CDS	8198114	8198223	.	-	2	Parent=Os03t0255100-02
Chr03	irgsp1_rep	CDS	8197906	8198013	.	-	0	Parent=Os03t0255100-02
Chr03	irgsp1_rep	CDS	8197649	8197756	.	-	0	Parent=Os03t0255100-02
Chr03	irgsp1_rep	CDS	8197261	8197472	.	-	0	Parent=Os03t0255100-02
Chr03	irgsp1_rep	CDS	8196627	8196963	.	-	1	Parent=Os03t0255100-02
Chr03	irgsp1_rep	CDS	8196441	8196548	.	-	0	Parent=Os03t0255100-02
Chr03	irgsp1_rep	three_prime_UTR	8196137	8196440	.	-	.	Parent=Os03t0255100-02
Chr03	irgsp1_rep	mRNA	8207714	8211913	.	-	.	ID=Os03t0255200-01;Name=Os03t0255200-01;Locus_id=Os03g0255200;Oryzabase Gene Name Synonym(s)=Young Leaf Chlorosis 1-like gene%2C YCL1-like gene;Note=Heat shock protein DnaJ%2C N-terminal domain containing protein.;Transcript_evidence=AK058212 (DDBJ%2C Best hit);ORF_evidence=B8AKA7 (UniProt);InterPro=Protein of unknown function DUF3353 (IPR021788);NIAS_FLcDNA=001-010-C10;Oryzabase=18437;Expression=AK058212;TENOR=Os03t0255200-01;KEGG=Os03t0255200-01
Chr03	irgsp1_rep	five_prime_UTR	8211754	8211913	.	-	.	Parent=Os03t0255200-01
Chr03	irgsp1_rep	five_prime_UTR	8211264	8211306	.	-	.	Parent=Os03t0255200-01
Chr03	irgsp1_rep	CDS	8211112	8211263	.	-	0	Parent=Os03t0255200-01
Chr03	irgsp1_rep	CDS	8210915	8211015	.	-	1	Parent=Os03t0255200-01
Chr03	irgsp1_rep	CDS	8210033	8210477	.	-	2	Parent=Os03t0255200-01
Chr03	irgsp1_rep	CDS	8208013	8208163	.	-	1	Parent=Os03t0255200-01
Chr03	irgsp1_rep	three_prime_UTR	8207714	8208012	.	-	.	Parent=Os03t0255200-01
Chr03	irgsp1_rep	mRNA	8207583	8211857	.	-	.	ID=Os03t0255200-02;Name=Os03t0255200-02;Locus_id=Os03g0255200;Oryzabase Gene Name Synonym(s)=Young Leaf Chlorosis 1-like gene%2C YCL1-like gene;Note=Heat shock protein DnaJ%2C N-terminal domain containing protein.;Transcript_evidence=AK071625 (DDBJ%2C Best hit);ORF_evidence=B8AKA7 (UniProt);InterPro=Protein of unknown function DUF3353 (IPR021788);NIAS_FLcDNA=J023106F16;Oryzabase=18437;Expression=AK071625;TENOR=Os03t0255200-02;KEGG=Os03t0255200-02
Chr03	irgsp1_rep	five_prime_UTR	8211754	8211857	.	-	.	Parent=Os03t0255200-02
Chr03	irgsp1_rep	five_prime_UTR	8211264	8211306	.	-	.	Parent=Os03t0255200-02
Chr03	irgsp1_rep	CDS	8211112	8211263	.	-	0	Parent=Os03t0255200-02
Chr03	irgsp1_rep	CDS	8210915	8211015	.	-	1	Parent=Os03t0255200-02
Chr03	irgsp1_rep	CDS	8210033	8210477	.	-	2	Parent=Os03t0255200-02
Chr03	irgsp1_rep	CDS	8208013	8208163	.	-	1	Parent=Os03t0255200-02
Chr03	irgsp1_rep	three_prime_UTR	8207583	8208012	.	-	.	Parent=Os03t0255200-02
Chr03	irgsp1_rep	mRNA	8212498	8217658	.	+	.	ID=Os03t0255400-01;Name=Os03t0255400-01;Locus_id=Os03g0255400;Note=FAR1 domain containing protein.;Transcript_evidence=AK066641 (DDBJ%2C Best hit);ORF_evidence=Q10NX3 (UniProt);InterPro=FAR1 DNA binding domain (IPR004330);NIAS_FLcDNA=J013072M14;Expression=AK066641;TENOR=Os03t0255400-01;KEGG=Os03t0255400-01
Chr03	irgsp1_rep	five_prime_UTR	8212498	8212847	.	+	.	Parent=Os03t0255400-01
Chr03	irgsp1_rep	five_prime_UTR	8213961	8214099	.	+	.	Parent=Os03t0255400-01
Chr03	irgsp1_rep	CDS	8214100	8215492	.	+	0	Parent=Os03t0255400-01
Chr03	irgsp1_rep	CDS	8215606	8215682	.	+	2	Parent=Os03t0255400-01
Chr03	irgsp1_rep	CDS	8216039	8216150	.	+	0	Parent=Os03t0255400-01
Chr03	irgsp1_rep	CDS	8216933	8217447	.	+	2	Parent=Os03t0255400-01
Chr03	irgsp1_rep	three_prime_UTR	8217448	8217658	.	+	.	Parent=Os03t0255400-01
Chr03	irgsp1_rep	mRNA	8218898	8224127	.	-	.	ID=Os03t0255500-01;Name=Os03t0255500-01;Locus_id=Os03g0255500;Oryzabase Gene Name Synonym(s)=Phosphoenolpyruvate carboxykinase;Note=Similar to Phosphoenolpyruvate carboxykinase 4 (EC 4.1.1.49) (Fragment).;Transcript_evidence=AK102392 (DDBJ%2C Best hit);ORF_evidence=NP_001146178.1 (RefSeq);GO=Biological Process: gluconeogenesis (GO:0006094),Molecular Function: phosphoenolpyruvate carboxykinase activity (GO:0004611),Molecular Function: phosphoenolpyruvate carboxykinase (ATP) activity (GO:0004612),Molecular Function: ATP binding (GO:0005524),Molecular Function: purine nucleotide binding (GO:0017076);InterPro=Phosphoenolpyruvate carboxykinase%2C ATP-utilising (IPR001272),Phosphoenolpyruvate carboxykinase%2C N-terminal (IPR008210),Phosphoenolpyruvate carboxykinase%2C C-terminal (IPR013035),Phosphoenolpyruvate carboxykinase (ATP)%2C conserved site (IPR015994);NIAS_FLcDNA=J033092F07;Oryzabase=21683;Expression=AK102392;TENOR=Os03t0255500-01;KEGG=Os03t0255500-01 (EC:4.1.1.49)
Chr03	irgsp1_rep	five_prime_UTR	8224055	8224127	.	-	.	Parent=Os03t0255500-01
Chr03	irgsp1_rep	five_prime_UTR	8223878	8223900	.	-	.	Parent=Os03t0255500-01
Chr03	irgsp1_rep	CDS	8223633	8223877	.	-	0	Parent=Os03t0255500-01
Chr03	irgsp1_rep	CDS	8222011	8222216	.	-	1	Parent=Os03t0255500-01
Chr03	irgsp1_rep	CDS	8221757	8221910	.	-	2	Parent=Os03t0255500-01
Chr03	irgsp1_rep	CDS	8221558	8221642	.	-	1	Parent=Os03t0255500-01
Chr03	irgsp1_rep	CDS	8221366	8221466	.	-	0	Parent=Os03t0255500-01
Chr03	irgsp1_rep	CDS	8220823	8221121	.	-	1	Parent=Os03t0255500-01
Chr03	irgsp1_rep	CDS	8220401	8220574	.	-	2	Parent=Os03t0255500-01
Chr03	irgsp1_rep	CDS	8220244	8220309	.	-	2	Parent=Os03t0255500-01
Chr03	irgsp1_rep	CDS	8219967	8220145	.	-	2	Parent=Os03t0255500-01
Chr03	irgsp1_rep	CDS	8219686	8219855	.	-	0	Parent=Os03t0255500-01
Chr03	irgsp1_rep	CDS	8219433	8219601	.	-	1	Parent=Os03t0255500-01
Chr03	irgsp1_rep	CDS	8219186	8219329	.	-	0	Parent=Os03t0255500-01
Chr03	irgsp1_rep	three_prime_UTR	8218898	8219185	.	-	.	Parent=Os03t0255500-01
Chr03	irgsp1_rep	mRNA	8218898	8219785	.	-	.	ID=Os03t0255500-02;Name=Os03t0255500-02;Locus_id=Os03g0255500;Oryzabase Gene Name Synonym(s)=Phosphoenolpyruvate carboxykinase;Note=Similar to Phosphoenolpyruvate carboxykinase.;Transcript_evidence=AK061620 (DDBJ%2C Best hit);ORF_evidence=Q7XAU8 (UniProt);GO=Biological Process: gluconeogenesis (GO:0006094),Molecular Function: phosphoenolpyruvate carboxykinase activity (GO:0004611),Molecular Function: phosphoenolpyruvate carboxykinase (ATP) activity (GO:0004612),Molecular Function: ATP binding (GO:0005524),Molecular Function: purine nucleotide binding (GO:0017076);InterPro=Phosphoenolpyruvate carboxykinase%2C ATP-utilising (IPR001272),Phosphoenolpyruvate carboxykinase%2C C-terminal (IPR013035);NIAS_FLcDNA=001-033-H02;Oryzabase=21683;Expression=AK061620;TENOR=Os03t0255500-02;KEGG=Os03t0255500-02 (EC:4.1.1.49)
Chr03	irgsp1_rep	five_prime_UTR	8219784	8219785	.	-	.	Parent=Os03t0255500-02
Chr03	irgsp1_rep	CDS	8219686	8219783	.	-	0	Parent=Os03t0255500-02
Chr03	irgsp1_rep	CDS	8219433	8219601	.	-	1	Parent=Os03t0255500-02
Chr03	irgsp1_rep	CDS	8219186	8219329	.	-	0	Parent=Os03t0255500-02
Chr03	irgsp1_rep	three_prime_UTR	8218898	8219185	.	-	.	Parent=Os03t0255500-02
Chr03	irgsp1_rep	mRNA	8241532	8242113	.	-	.	ID=Os03t0255900-01;Name=Os03t0255900-01;Locus_id=Os03g0255900;Note=Conserved hypothetical protein.;Transcript_evidence=AK063057 (DDBJ%2C Best hit);ORF_evidence=Q10NW5 (UniProt);NIAS_FLcDNA=001-110-F05;Expression=AK063057;TENOR=Os03t0255900-01;KEGG=Os03t0255900-01
Chr03	irgsp1_rep	five_prime_UTR	8242009	8242113	.	-	.	Parent=Os03t0255900-01
Chr03	irgsp1_rep	CDS	8241712	8242008	.	-	0	Parent=Os03t0255900-01
Chr03	irgsp1_rep	three_prime_UTR	8241532	8241711	.	-	.	Parent=Os03t0255900-01
Chr03	irgsp1_rep	mRNA	8255582	8260796	.	-	.	ID=Os03t0256400-01;Name=Os03t0256400-01;Locus_id=Os03g0256400;Note=Similar to Imidazole glycerol phosphate synthase hisHF%2C chloroplast precursor (IGP synthase) (ImGP synthase) (IGPS) [Includes: Glutamine amidotransferase (EC 2.4.2.-)%3B Cyclase (EC 4.1.3.-)].;Transcript_evidence=AK073854 (DDBJ%2C Best hit);ORF_evidence=B8AKB1 (UniProt);GO=Biological Process: histidine biosynthetic process (GO:0000105),Biological Process: metabolic process (GO:0008152),Cellular Component: cytoplasm (GO:0005737),Molecular Function: imidazoleglycerol-phosphate synthase activity (GO:0000107),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring pentosyl groups (GO:0016763),Molecular Function: oxo-acid-lyase activity (GO:0016833);InterPro=Histidine biosynthesis%2C HisF (IPR004651),Histidine biosynthesis (IPR006062),Imidazole glycerol phosphate synthase%2C subunit H (IPR010139),Ribulose-phosphate binding barrel (IPR011060),Aldolase-type TIM barrel (IPR013785),Imidazole glycerol phosphate synthase HisHF (IPR014640),Glutamine amidotransferase type 1 (IPR017926);NIAS_FLcDNA=J033072A12;Expression=AK073854;TENOR=Os03t0256400-01;KEGG=Os03t0256400-01 (EC:2.4.2.-%2C EC:4.1.3.-)
Chr03	irgsp1_rep	five_prime_UTR	8260735	8260796	.	-	.	Parent=Os03t0256400-01
Chr03	irgsp1_rep	CDS	8260620	8260734	.	-	0	Parent=Os03t0256400-01
Chr03	irgsp1_rep	CDS	8260208	8260489	.	-	2	Parent=Os03t0256400-01
Chr03	irgsp1_rep	CDS	8259871	8260040	.	-	2	Parent=Os03t0256400-01
Chr03	irgsp1_rep	CDS	8259674	8259788	.	-	0	Parent=Os03t0256400-01
Chr03	irgsp1_rep	CDS	8259412	8259467	.	-	2	Parent=Os03t0256400-01
Chr03	irgsp1_rep	CDS	8259286	8259324	.	-	0	Parent=Os03t0256400-01
Chr03	irgsp1_rep	CDS	8259109	8259207	.	-	0	Parent=Os03t0256400-01
Chr03	irgsp1_rep	CDS	8258815	8258877	.	-	0	Parent=Os03t0256400-01
Chr03	irgsp1_rep	CDS	8258674	8258736	.	-	0	Parent=Os03t0256400-01
Chr03	irgsp1_rep	CDS	8258510	8258592	.	-	0	Parent=Os03t0256400-01
Chr03	irgsp1_rep	CDS	8258040	8258148	.	-	1	Parent=Os03t0256400-01
Chr03	irgsp1_rep	CDS	8257918	8257971	.	-	0	Parent=Os03t0256400-01
Chr03	irgsp1_rep	CDS	8257407	8257494	.	-	0	Parent=Os03t0256400-01
Chr03	irgsp1_rep	CDS	8257298	8257335	.	-	2	Parent=Os03t0256400-01
Chr03	irgsp1_rep	CDS	8256896	8257001	.	-	0	Parent=Os03t0256400-01
Chr03	irgsp1_rep	CDS	8256068	8256234	.	-	2	Parent=Os03t0256400-01
Chr03	irgsp1_rep	CDS	8255724	8255783	.	-	0	Parent=Os03t0256400-01
Chr03	irgsp1_rep	three_prime_UTR	8255582	8255723	.	-	.	Parent=Os03t0256400-01
Chr03	irgsp1_rep	mRNA	8294652	8306315	.	-	.	ID=Os03t0256800-00;Name=Os03t0256800-00;Locus_id=Os03g0256800;Note=Similar to RhoGAP domain containing protein%2C expressed.;Transcript_evidence=tplb0001l08 (Wheat FLcDNA);ORF_evidence=Q10Q50 (UniProt);GO=Biological Process: signal transduction (GO:0007165),Cellular Component: intracellular (GO:0005622),Molecular Function: protein binding (GO:0005515);InterPro=Rho GTPase-activating protein domain (IPR000198),Pleckstrin homology domain (IPR001849),Rho GTPase activation protein (IPR008936),Pleckstrin homology-type (IPR011993);TENOR=Os03t0256800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	8306107	8306315	.	-	.	Parent=Os03t0256800-00
Chr03	irgsp1_rep	five_prime_UTR	8305423	8305518	.	-	.	Parent=Os03t0256800-00
Chr03	irgsp1_rep	five_prime_UTR	8305036	8305112	.	-	.	Parent=Os03t0256800-00
Chr03	irgsp1_rep	CDS	8305000	8305035	.	-	0	Parent=Os03t0256800-00
Chr03	irgsp1_rep	CDS	8304337	8304462	.	-	0	Parent=Os03t0256800-00
Chr03	irgsp1_rep	CDS	8303906	8303942	.	-	0	Parent=Os03t0256800-00
Chr03	irgsp1_rep	CDS	8302780	8302856	.	-	2	Parent=Os03t0256800-00
Chr03	irgsp1_rep	CDS	8301700	8301767	.	-	0	Parent=Os03t0256800-00
Chr03	irgsp1_rep	CDS	8301540	8301618	.	-	1	Parent=Os03t0256800-00
Chr03	irgsp1_rep	CDS	8301155	8301299	.	-	0	Parent=Os03t0256800-00
Chr03	irgsp1_rep	CDS	8300937	8301041	.	-	2	Parent=Os03t0256800-00
Chr03	irgsp1_rep	CDS	8300699	8300776	.	-	2	Parent=Os03t0256800-00
Chr03	irgsp1_rep	CDS	8300437	8300492	.	-	2	Parent=Os03t0256800-00
Chr03	irgsp1_rep	CDS	8300275	8300344	.	-	0	Parent=Os03t0256800-00
Chr03	irgsp1_rep	CDS	8299804	8299888	.	-	2	Parent=Os03t0256800-00
Chr03	irgsp1_rep	CDS	8299094	8299337	.	-	1	Parent=Os03t0256800-00
Chr03	irgsp1_rep	CDS	8298784	8298987	.	-	0	Parent=Os03t0256800-00
Chr03	irgsp1_rep	CDS	8297683	8297763	.	-	0	Parent=Os03t0256800-00
Chr03	irgsp1_rep	three_prime_UTR	8297582	8297682	.	-	.	Parent=Os03t0256800-00
Chr03	irgsp1_rep	three_prime_UTR	8297447	8297496	.	-	.	Parent=Os03t0256800-00
Chr03	irgsp1_rep	three_prime_UTR	8296747	8296807	.	-	.	Parent=Os03t0256800-00
Chr03	irgsp1_rep	three_prime_UTR	8296582	8296665	.	-	.	Parent=Os03t0256800-00
Chr03	irgsp1_rep	three_prime_UTR	8296251	8296367	.	-	.	Parent=Os03t0256800-00
Chr03	irgsp1_rep	three_prime_UTR	8295752	8296166	.	-	.	Parent=Os03t0256800-00
Chr03	irgsp1_rep	three_prime_UTR	8294652	8294841	.	-	.	Parent=Os03t0256800-00
Chr03	irgsp1_rep	mRNA	8307296	8311472	.	-	.	ID=Os03t0257000-01;Name=Os03t0257000-01;Locus_id=Os03g0257000;Note=Conserved hypothetical protein.;Transcript_evidence=AK121738 (DDBJ%2C Best hit);ORF_evidence=Q10NV3 (UniProt);NIAS_FLcDNA=J033084N15;TENOR=Os03t0257000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	8311472	8311472	.	-	.	Parent=Os03t0257000-01
Chr03	irgsp1_rep	CDS	8311276	8311471	.	-	0	Parent=Os03t0257000-01
Chr03	irgsp1_rep	CDS	8309143	8309216	.	-	2	Parent=Os03t0257000-01
Chr03	irgsp1_rep	CDS	8308926	8309005	.	-	0	Parent=Os03t0257000-01
Chr03	irgsp1_rep	CDS	8308024	8308175	.	-	1	Parent=Os03t0257000-01
Chr03	irgsp1_rep	CDS	8307663	8307733	.	-	2	Parent=Os03t0257000-01
Chr03	irgsp1_rep	three_prime_UTR	8307296	8307662	.	-	.	Parent=Os03t0257000-01
Chr03	irgsp1_rep	mRNA	8327284	8328581	.	-	.	ID=Os03t0257500-01;Name=Os03t0257500-01;Locus_id=Os03g0257500;Note=Protein of unknown function DUF292%2C eukaryotic domain containing protein.;Transcript_evidence=AK058775 (DDBJ%2C Best hit);ORF_evidence=A2XEP8 (UniProt);InterPro=Domain of unknown function DUF292%2C eukaryotic (IPR005061);NIAS_FLcDNA=001-002-A09;Expression=AK058775;TENOR=Os03t0257500-01;KEGG=Os03t0257500-01
Chr03	irgsp1_rep	five_prime_UTR	8328407	8328581	.	-	.	Parent=Os03t0257500-01
Chr03	irgsp1_rep	CDS	8328230	8328406	.	-	0	Parent=Os03t0257500-01
Chr03	irgsp1_rep	CDS	8328029	8328132	.	-	0	Parent=Os03t0257500-01
Chr03	irgsp1_rep	CDS	8327776	8327941	.	-	1	Parent=Os03t0257500-01
Chr03	irgsp1_rep	CDS	8327544	8327678	.	-	0	Parent=Os03t0257500-01
Chr03	irgsp1_rep	three_prime_UTR	8327284	8327543	.	-	.	Parent=Os03t0257500-01
Chr03	irgsp1_rep	mRNA	8329118	8331769	.	-	.	ID=Os03t0257600-01;Name=Os03t0257600-01;Locus_id=Os03g0257600;CGSNL Gene Symbol=DUF292;CGSNL Gene Name=DOMAINS OF UNKNOWN FUNCTION PROTEIN 292;Oryzabase Gene Symbol Synonym(s)=OsDUF292;Oryzabase Gene Name Synonym(s)=domains of unknown function protein 292;Note=Hypothetical conserved gene.;Transcript_evidence=AK287802 (DDBJ%2C Best hit);ORF_evidence=B9F744 (UniProt);InterPro=Domain of unknown function DUF292%2C eukaryotic (IPR005061);NIAS_FLcDNA=J065177L24;Oryzabase=23757;TENOR=Os03t0257600-01;KEGG=Os03t0257600-01
Chr03	irgsp1_rep	five_prime_UTR	8331709	8331769	.	-	.	Parent=Os03t0257600-01
Chr03	irgsp1_rep	CDS	8331526	8331708	.	-	0	Parent=Os03t0257600-01
Chr03	irgsp1_rep	CDS	8331338	8331441	.	-	0	Parent=Os03t0257600-01
Chr03	irgsp1_rep	CDS	8331045	8331213	.	-	1	Parent=Os03t0257600-01
Chr03	irgsp1_rep	CDS	8330776	8330898	.	-	0	Parent=Os03t0257600-01
Chr03	irgsp1_rep	CDS	8330581	8330661	.	-	0	Parent=Os03t0257600-01
Chr03	irgsp1_rep	CDS	8329533	8330495	.	-	0	Parent=Os03t0257600-01
Chr03	irgsp1_rep	three_prime_UTR	8329118	8329532	.	-	.	Parent=Os03t0257600-01
Chr03	irgsp1_rep	mRNA	8330604	8331988	.	+	.	ID=Os03t0257700-01;Name=Os03t0257700-01;Locus_id=Os03g0257700;Note=Hypothetical protein.;Transcript_evidence=AK110865 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-172-D12;Expression=AK110865;TENOR=Os03t0257700-01;KEGG=Os03t0257700-01
Chr03	irgsp1_rep	five_prime_UTR	8330604	8331394	.	+	.	Parent=Os03t0257700-01
Chr03	irgsp1_rep	CDS	8331395	8331982	.	+	0	Parent=Os03t0257700-01
Chr03	irgsp1_rep	three_prime_UTR	8331983	8331988	.	+	.	Parent=Os03t0257700-01
Chr03	irgsp1_rep	mRNA	8337473	8339678	.	+	.	ID=Os03t0257900-01;Name=Os03t0257900-01;Locus_id=Os03g0257900;Note=Similar to Lectin-like receptor kinase 7%3B2.;Transcript_evidence=AK103486 (DDBJ%2C Best hit);ORF_evidence=A2XEQ0 (UniProt);InterPro=CytoChrome c oxidase biogenesis protein Cmc1-like (IPR013892);NIAS_FLcDNA=J033130M07;Oryzabase=20451;Expression=AK103486;TENOR=Os03t0257900-01;KEGG=Os03t0257900-01
Chr03	irgsp1_rep	five_prime_UTR	8337473	8337592	.	+	.	Parent=Os03t0257900-01
Chr03	irgsp1_rep	CDS	8337593	8337647	.	+	0	Parent=Os03t0257900-01
Chr03	irgsp1_rep	CDS	8338496	8338643	.	+	2	Parent=Os03t0257900-01
Chr03	irgsp1_rep	CDS	8339422	8339497	.	+	1	Parent=Os03t0257900-01
Chr03	irgsp1_rep	three_prime_UTR	8339498	8339678	.	+	.	Parent=Os03t0257900-01
Chr03	irgsp1_rep	mRNA	8337478	8342481	.	+	.	ID=Os03t0257900-02;Name=Os03t0257900-02;Locus_id=Os03g0257900;Note=Similar to Lectin-like receptor kinase 7%3B2.;Transcript_evidence=AK100114 (DDBJ%2C Best hit);ORF_evidence=A2XEQ0 (UniProt);InterPro=CytoChrome c oxidase biogenesis protein Cmc1-like (IPR013892);NIAS_FLcDNA=J023006K11;Oryzabase=20451;Expression=AK100114;TENOR=Os03t0257900-02;KEGG=Os03t0257900-02
Chr03	irgsp1_rep	five_prime_UTR	8337478	8337592	.	+	.	Parent=Os03t0257900-02
Chr03	irgsp1_rep	CDS	8337593	8337647	.	+	0	Parent=Os03t0257900-02
Chr03	irgsp1_rep	CDS	8338496	8338643	.	+	2	Parent=Os03t0257900-02
Chr03	irgsp1_rep	CDS	8339422	8339497	.	+	1	Parent=Os03t0257900-02
Chr03	irgsp1_rep	three_prime_UTR	8339498	8339539	.	+	.	Parent=Os03t0257900-02
Chr03	irgsp1_rep	three_prime_UTR	8340037	8342481	.	+	.	Parent=Os03t0257900-02
Chr03	irgsp1_rep	mRNA	8337501	8339681	.	+	.	ID=Os03t0257900-03;Name=Os03t0257900-03;Locus_id=Os03g0257900;Note=Similar to Lectin-like receptor kinase 7%3B2.;Transcript_evidence=AK063892 (DDBJ%2C Best hit);ORF_evidence=A2XEQ0 (UniProt);InterPro=CytoChrome c oxidase biogenesis protein Cmc1-like (IPR013892);NIAS_FLcDNA=001-122-G07;Oryzabase=20451;Expression=AK063892;TENOR=Os03t0257900-03;KEGG=Os03t0257900-03
Chr03	irgsp1_rep	five_prime_UTR	8337501	8337592	.	+	.	Parent=Os03t0257900-03
Chr03	irgsp1_rep	CDS	8337593	8337647	.	+	0	Parent=Os03t0257900-03
Chr03	irgsp1_rep	CDS	8338496	8338643	.	+	2	Parent=Os03t0257900-03
Chr03	irgsp1_rep	CDS	8339422	8339497	.	+	1	Parent=Os03t0257900-03
Chr03	irgsp1_rep	three_prime_UTR	8339498	8339681	.	+	.	Parent=Os03t0257900-03
Chr03	irgsp1_rep	mRNA	8339827	8342028	.	-	.	ID=Os03t0258000-01;Name=Os03t0258000-01;Locus_id=Os03g0258000;Note=Similar to Resistance protein candidate (Fragment).;Transcript_evidence=AK107444 (DDBJ%2C Best hit);ORF_evidence=B9F746 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-128-B09;Expression=AK107444;TENOR=Os03t0258000-01;KEGG=Os03t0258000-01
Chr03	irgsp1_rep	five_prime_UTR	8341969	8342028	.	-	.	Parent=Os03t0258000-01
Chr03	irgsp1_rep	CDS	8341764	8341968	.	-	0	Parent=Os03t0258000-01
Chr03	irgsp1_rep	CDS	8340397	8341706	.	-	2	Parent=Os03t0258000-01
Chr03	irgsp1_rep	three_prime_UTR	8339827	8340396	.	-	.	Parent=Os03t0258000-01
Chr03	irgsp1_rep	mRNA	8352195	8353718	.	+	.	ID=Os03t0258200-01;Name=Os03t0258200-01;Locus_id=Os03g0258200;Note=Alpha/beta hydrolase fold-3 domain containing protein.;Transcript_evidence=AK100934 (DDBJ%2C Best hit);ORF_evidence=B6THR7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Lipase%2C GDXG%2C active site (IPR002168),Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=J023136E13;Expression=AK100934;TENOR=Os03t0258200-01;KEGG=Os03t0258200-01
Chr03	irgsp1_rep	five_prime_UTR	8352195	8352290	.	+	.	Parent=Os03t0258200-01
Chr03	irgsp1_rep	CDS	8352291	8353394	.	+	0	Parent=Os03t0258200-01
Chr03	irgsp1_rep	three_prime_UTR	8353395	8353718	.	+	.	Parent=Os03t0258200-01
Chr03	irgsp1_rep	mRNA	8369347	8370978	.	+	.	ID=Os03t0258500-01;Name=Os03t0258500-01;Locus_id=Os03g0258500;RAP-DB Gene Symbol Synonym(s)=ATG6C%2C OsATG6c%2C OsATG6b;RAP-DB Gene Name Synonym(s)=AUTOPHAGY ASSOCIATED GENE 6C%2C autophagy 6c;CGSNL Gene Symbol=ATG6C;CGSNL Gene Name=AUTOPHAGY ASSOCIATED GENE 6C;Oryzabase Gene Symbol Synonym(s)=OsATG6c%2C OsATG6b;Oryzabase Gene Name Synonym(s)=autophagy 6c;Note=ATG6/Beclin-1 protein%2C Abiotic stresses (heat%2Ccold and drought) and hormone (abscisic acid) response;Transcript_evidence=Inferred from literature;ORF_evidence=Q10NU3;GO=Biological Process: autophagy (GO:0006914);InterPro=Atg6/Beclin (IPR007243);Manual Curation=March 7%2C 2017;Literature_PMID=22930426;Oryzabase=9642;TENOR=Os03t0258500-00
Chr03	irgsp1_rep	CDS	8369347	8370978	.	+	0	Parent=Os03t0258500-01
Chr03	irgsp1_rep	mRNA	8384206	8386087	.	+	.	ID=Os03t0258900-01;Name=Os03t0258900-01;Locus_id=Os03g0258900;Note=Galactose oxidase%2C beta-propeller domain containing protein.;Transcript_evidence=AK121313 (DDBJ%2C Best hit);ORF_evidence=NP_001149941.1 (RefSeq);InterPro=Glyoxal oxidase%2C N-terminal (IPR009880),Galactose oxidase/kelch%2C beta-propeller (IPR011043),Immunoglobulin-like fold (IPR013783),Immunoglobulin E-set (IPR014756),Domain of unknown function DUF1929 (IPR015202),Galactose oxidase%2C beta-propeller (IPR015916);NIAS_FLcDNA=J023112O15;Expression=AK121313;TENOR=Os03t0258900-01;KEGG=Os03t0258900-01
Chr03	irgsp1_rep	five_prime_UTR	8384206	8384238	.	+	.	Parent=Os03t0258900-01
Chr03	irgsp1_rep	CDS	8384239	8385933	.	+	0	Parent=Os03t0258900-01
Chr03	irgsp1_rep	three_prime_UTR	8385934	8386087	.	+	.	Parent=Os03t0258900-01
Chr03	irgsp1_rep	mRNA	8386677	8389176	.	+	.	ID=Os03t0259001-00;Name=Os03t0259001-00;Locus_id=Os03g0259001;Note=Hypothetical gene.;Transcript_evidence=CT835144 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os03t0259001-00;KEGG=Os03t0259001-00
Chr03	irgsp1_rep	five_prime_UTR	8386677	8388749	.	+	.	Parent=Os03t0259001-00
Chr03	irgsp1_rep	CDS	8388750	8388974	.	+	0	Parent=Os03t0259001-00
Chr03	irgsp1_rep	three_prime_UTR	8388975	8389176	.	+	.	Parent=Os03t0259001-00
Chr03	irgsp1_rep	mRNA	8396569	8397410	.	+	.	ID=Os03t0259100-01;Name=Os03t0259100-01;Locus_id=Os03g0259100;CGSNL Gene Symbol=UCL7;CGSNL Gene Name=UCLACYANIN-LIKE PROTEIN 7;Oryzabase Gene Symbol Synonym(s)=OsUCL7;Oryzabase Gene Name Synonym(s)=uclacyanin-like protein 7;Note=Similar to Basic blue protein (Cusacyanin) (Plantacyanin) (CBP).;Transcript_evidence=AK107381 (DDBJ%2C Best hit);ORF_evidence=NP_001149612.1 (RefSeq);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);NIAS_FLcDNA=002-127-C02;Oryzabase=9756;Expression=AK107381;TENOR=Os03t0259100-01;KEGG=Os03t0259100-01
Chr03	irgsp1_rep	five_prime_UTR	8396569	8396648	.	+	.	Parent=Os03t0259100-01
Chr03	irgsp1_rep	CDS	8396649	8396817	.	+	0	Parent=Os03t0259100-01
Chr03	irgsp1_rep	CDS	8396927	8397120	.	+	2	Parent=Os03t0259100-01
Chr03	irgsp1_rep	three_prime_UTR	8397121	8397410	.	+	.	Parent=Os03t0259100-01
Chr03	irgsp1_rep	mRNA	8398817	8405867	.	+	.	ID=Os03t0259300-01;Name=Os03t0259300-01;Locus_id=Os03g0259300;RAP-DB Gene Symbol Synonym(s)=OsHrd3%2C Hrd3;RAP-DB Gene Name Synonym(s)=a homologue of yeast Hrd3/mammalian SEL1L;CGSNL Gene Symbol=HRD3;Oryzabase Gene Symbol Synonym(s)=OsHrd3%2C Hrd3;Oryzabase Gene Name Synonym(s)=a homologue of yeast Hrd3/mammalian SEL1L;Note=Homologue of yeast Hrd3/mammalian SEL1L%2C ER-resident type I membrane protein%2C Polyubiquitination of unfolded proteins%2C Quality control of endoplasmic reticulum-derived protein bodies in rice endosperm;Transcript_evidence=AK063394;ORF_evidence=Q10NT7;GO=Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical domain (IPR011990),Sel1-like repeat (IPR006597),Tetratricopeptide TPR-3 (IPR011716);NIAS_FLcDNA=001-114-H06;Manual Curation=June 1%2C 2016;Literature_PMID=25977235;Oryzabase=19801;Expression=AK063394;TENOR=Os03t0259300-01;KEGG=Os03t0259300-01
Chr03	irgsp1_rep	five_prime_UTR	8398817	8398820	.	+	.	Parent=Os03t0259300-01
Chr03	irgsp1_rep	CDS	8398821	8399435	.	+	0	Parent=Os03t0259300-01
Chr03	irgsp1_rep	CDS	8400548	8401039	.	+	0	Parent=Os03t0259300-01
Chr03	irgsp1_rep	CDS	8401832	8402047	.	+	0	Parent=Os03t0259300-01
Chr03	irgsp1_rep	CDS	8403144	8403467	.	+	0	Parent=Os03t0259300-01
Chr03	irgsp1_rep	CDS	8404221	8404463	.	+	0	Parent=Os03t0259300-01
Chr03	irgsp1_rep	CDS	8405286	8405480	.	+	0	Parent=Os03t0259300-01
Chr03	irgsp1_rep	three_prime_UTR	8405481	8405867	.	+	.	Parent=Os03t0259300-01
Chr03	irgsp1_rep	mRNA	8405734	8406410	.	+	.	ID=Os03t0259300-02;Name=Os03t0259300-02;Locus_id=Os03g0259300;CGSNL Gene Symbol=HRD3;Oryzabase Gene Symbol Synonym(s)=OsHrd3%2C Hrd3;Oryzabase Gene Name Synonym(s)=a homologue of yeast Hrd3/mammalian SEL1L;Note=Non-protein coding transcript.;Transcript_evidence=AK109167 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-155-H02;Oryzabase=19801;TENOR=Os03t0259300-02
Chr03	irgsp1_rep	exon	8405734	8405815	.	+	.	Parent=Os03t0259300-02
Chr03	irgsp1_rep	exon	8406071	8406410	.	+	.	Parent=Os03t0259300-02
Chr03	irgsp1_rep	mRNA	8406809	8408296	.	-	.	ID=Os03t0259400-00;Name=Os03t0259400-00;Locus_id=Os03g0259400;CGSNL Gene Symbol=LAR;CGSNL Gene Name=LEUCOANTHOCYANIDIN REDUCTASE;Oryzabase Gene Symbol Synonym(s)=OsLAR;Oryzabase Gene Name Synonym(s)=leucoanthocyanidin reductase;Note=Similar to Leucoanthocyanidin reductase (EC 1.17.1.3) (Leucocyanidin reductase).;Transcript_evidence=AK376794 (DDBJ);ORF_evidence=Q3KN74 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NmrA-like (IPR008030),NAD(P)-binding domain (IPR016040);Oryzabase=14088;TENOR=Os03t0259400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	8408072	8408296	.	-	0	Parent=Os03t0259400-00
Chr03	irgsp1_rep	CDS	8407836	8407985	.	-	0	Parent=Os03t0259400-00
Chr03	irgsp1_rep	CDS	8407490	8407727	.	-	0	Parent=Os03t0259400-00
Chr03	irgsp1_rep	CDS	8407195	8407398	.	-	2	Parent=Os03t0259400-00
Chr03	irgsp1_rep	CDS	8406853	8407112	.	-	2	Parent=Os03t0259400-00
Chr03	irgsp1_rep	three_prime_UTR	8406809	8406852	.	-	.	Parent=Os03t0259400-00
Chr03	irgsp1_rep	mRNA	8409910	8411407	.	+	.	ID=Os03t0259500-00;Name=Os03t0259500-00;Locus_id=Os03g0259500;CGSNL Gene Symbol=UBL40-2;CGSNL Gene Name=UBIQUITIN FUSION RIBOSOMAL PROTEIN L40-2;Oryzabase Gene Symbol Synonym(s)=UbL40-2%2C OsUbL40-2;Oryzabase Gene Name Synonym(s)=Ubiquitin fusion protein%2C ubiquitin fusion ribosomal protein L40-2;Note=Similar to Ubiquitin.;Transcript_evidence=EU952795 (DDBJ);ORF_evidence=P0CH35 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L40e (IPR001975);Oryzabase=17713;TENOR=Os03t0259500-00;KEGG=Os03t0259500-00
Chr03	irgsp1_rep	CDS	8409910	8410151	.	+	0	Parent=Os03t0259500-00
Chr03	irgsp1_rep	CDS	8410328	8410554	.	+	1	Parent=Os03t0259500-00
Chr03	irgsp1_rep	CDS	8411199	8411407	.	+	2	Parent=Os03t0259500-00
Chr03	irgsp1_rep	mRNA	8410048	8411355	.	-	.	ID=Os03t0259551-00;Name=Os03t0259551-00;Locus_id=Os03g0259551;Note=Non-protein coding transcript.;Transcript_evidence=BT016508 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0259551-00
Chr03	irgsp1_rep	exon	8411269	8411355	.	-	.	Parent=Os03t0259551-00
Chr03	irgsp1_rep	exon	8410342	8410514	.	-	.	Parent=Os03t0259551-00
Chr03	irgsp1_rep	exon	8410048	8410164	.	-	.	Parent=Os03t0259551-00
Chr03	irgsp1_rep	mRNA	8413198	8414964	.	+	.	ID=Os03t0259600-01;Name=Os03t0259600-01;Locus_id=Os03g0259600;Note=Ubiquitin domain containing protein.;Transcript_evidence=AK108532 (DDBJ%2C Best hit);ORF_evidence=B9F749 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin (IPR000626),Ubiquitin supergroup (IPR019955);NIAS_FLcDNA=002-144-C04;TENOR=Os03t0259600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	8413198	8413198	.	+	.	Parent=Os03t0259600-01
Chr03	irgsp1_rep	CDS	8413199	8413528	.	+	0	Parent=Os03t0259600-01
Chr03	irgsp1_rep	CDS	8414029	8414253	.	+	0	Parent=Os03t0259600-01
Chr03	irgsp1_rep	CDS	8414647	8414697	.	+	0	Parent=Os03t0259600-01
Chr03	irgsp1_rep	three_prime_UTR	8414698	8414964	.	+	.	Parent=Os03t0259600-01
Chr03	irgsp1_rep	mRNA	8415745	8419093	.	-	.	ID=Os03t0259700-01;Name=Os03t0259700-01;Locus_id=Os03g0259700;Note=Protein of unknown function DUF1630 family protein.;Transcript_evidence=AK243127 (DDBJ%2C Best hit);ORF_evidence=A3AG88 (UniProt);InterPro=Afi1%2C N-terminal (IPR012860),Uncharacterised protein family FAM116 (IPR024224);NIAS_FLcDNA=J100029H23;TENOR=Os03t0259700-01;KEGG=Os03t0259700-01
Chr03	irgsp1_rep	five_prime_UTR	8418933	8419093	.	-	.	Parent=Os03t0259700-01
Chr03	irgsp1_rep	CDS	8417410	8418932	.	-	0	Parent=Os03t0259700-01
Chr03	irgsp1_rep	CDS	8417105	8417297	.	-	1	Parent=Os03t0259700-01
Chr03	irgsp1_rep	CDS	8415823	8416017	.	-	0	Parent=Os03t0259700-01
Chr03	irgsp1_rep	three_prime_UTR	8415745	8415822	.	-	.	Parent=Os03t0259700-01
Chr03	irgsp1_rep	mRNA	8429310	8433531	.	+	.	ID=Os03t0259900-01;Name=Os03t0259900-01;Locus_id=Os03g0259900;Note=Protein of unknown function DUF593 family protein.;Transcript_evidence=AK069483 (DDBJ%2C Best hit);ORF_evidence=A3AG89 (UniProt);InterPro=Protein of unknown function DUF593 (IPR007656);NIAS_FLcDNA=J023020K23;Expression=AK069483;TENOR=Os03t0259900-01;KEGG=Os03t0259900-01
Chr03	irgsp1_rep	five_prime_UTR	8429310	8429684	.	+	.	Parent=Os03t0259900-01
Chr03	irgsp1_rep	CDS	8429685	8430831	.	+	0	Parent=Os03t0259900-01
Chr03	irgsp1_rep	CDS	8430988	8431206	.	+	2	Parent=Os03t0259900-01
Chr03	irgsp1_rep	CDS	8431315	8432651	.	+	2	Parent=Os03t0259900-01
Chr03	irgsp1_rep	three_prime_UTR	8432652	8432677	.	+	.	Parent=Os03t0259900-01
Chr03	irgsp1_rep	three_prime_UTR	8433008	8433531	.	+	.	Parent=Os03t0259900-01
Chr03	irgsp1_rep	mRNA	8434789	8437195	.	+	.	ID=Os03t0260000-01;Name=Os03t0260000-01;Locus_id=Os03g0260000;Note=Dynamin family protein.;Transcript_evidence=AK064198 (DDBJ%2C Best hit);ORF_evidence=Q01MZ7 (UniProt);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Dynamin central domain (IPR000375),Dynamin%2C GTPase domain (IPR001401),Dynamin GTPase effector (IPR003130),GTPase effector domain%2C GED (IPR020850),Dynamin (IPR022812);NIAS_FLcDNA=002-104-D07;Expression=AK064198;TENOR=Os03t0260000-01;KEGG=Os03t0260000-01
Chr03	irgsp1_rep	five_prime_UTR	8434789	8434859	.	+	.	Parent=Os03t0260000-01
Chr03	irgsp1_rep	CDS	8434860	8436896	.	+	0	Parent=Os03t0260000-01
Chr03	irgsp1_rep	three_prime_UTR	8436897	8437195	.	+	.	Parent=Os03t0260000-01
Chr03	irgsp1_rep	mRNA	8437361	8441906	.	-	.	ID=Os03t0260100-01;Name=Os03t0260100-01;Locus_id=Os03g0260100;Note=Metallophosphoesterase domain domain containing protein.;Transcript_evidence=AK066143 (DDBJ%2C Best hit);ORF_evidence=Q10NS8 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Metallophosphoesterase domain (IPR004843);NIAS_FLcDNA=J013059J10;Expression=AK066143;TENOR=Os03t0260100-01;KEGG=Os03t0260100-01
Chr03	irgsp1_rep	five_prime_UTR	8441847	8441906	.	-	.	Parent=Os03t0260100-01
Chr03	irgsp1_rep	CDS	8441576	8441846	.	-	0	Parent=Os03t0260100-01
Chr03	irgsp1_rep	CDS	8440206	8440447	.	-	2	Parent=Os03t0260100-01
Chr03	irgsp1_rep	CDS	8439250	8439258	.	-	0	Parent=Os03t0260100-01
Chr03	irgsp1_rep	three_prime_UTR	8437729	8439249	.	-	.	Parent=Os03t0260100-01
Chr03	irgsp1_rep	three_prime_UTR	8437361	8437649	.	-	.	Parent=Os03t0260100-01
Chr03	irgsp1_rep	mRNA	8437541	8441853	.	+	.	ID=Os03t0260266-00;Name=Os03t0260266-00;Locus_id=Os03g0260266;Note=Hypothetical protein.;Transcript_evidence=tplb0027d19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0260266-00
Chr03	irgsp1_rep	five_prime_UTR	8437541	8437649	.	+	.	Parent=Os03t0260266-00
Chr03	irgsp1_rep	five_prime_UTR	8437729	8437747	.	+	.	Parent=Os03t0260266-00
Chr03	irgsp1_rep	CDS	8437748	8438101	.	+	0	Parent=Os03t0260266-00
Chr03	irgsp1_rep	three_prime_UTR	8438102	8439245	.	+	.	Parent=Os03t0260266-00
Chr03	irgsp1_rep	three_prime_UTR	8440203	8440447	.	+	.	Parent=Os03t0260266-00
Chr03	irgsp1_rep	three_prime_UTR	8441576	8441853	.	+	.	Parent=Os03t0260266-00
Chr03	irgsp1_rep	mRNA	8445623	8446519	.	-	.	ID=Os03t0260432-01;Name=Os03t0260432-01;Locus_id=Os03g0260432;Oryzabase Gene Symbol Synonym(s)=OsCLE302%2C CLE302;Oryzabase Gene Name Synonym(s)=CLV3/ESR-related 302%2C CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 302;Note=Similar to CLE family OsCLE302 protein.;Transcript_evidence=AK241847 (DDBJ%2C Best hit);ORF_evidence=A8R3M9 (UniProt);NIAS_FLcDNA=J065214M10;Oryzabase=14229;TENOR=Os03t0260432-01;KEGG=Os03t0260432-01
Chr03	irgsp1_rep	five_prime_UTR	8446330	8446519	.	-	.	Parent=Os03t0260432-01
Chr03	irgsp1_rep	CDS	8446069	8446329	.	-	0	Parent=Os03t0260432-01
Chr03	irgsp1_rep	three_prime_UTR	8445623	8446068	.	-	.	Parent=Os03t0260432-01
Chr03	irgsp1_rep	mRNA	8458131	8461066	.	+	.	ID=Os03t0260600-01;Name=Os03t0260600-01;Locus_id=Os03g0260600;Oryzabase Gene Symbol Synonym(s)=OsbHLH040%2C bHLH40;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 040;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=AK106649 (DDBJ%2C Best hit);ORF_evidence=NP_564944.1 (RefSeq);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=002-113-F07;Oryzabase=15331;Expression=AK106649;TENOR=Os03t0260600-01;KEGG=Os03t0260600-01
Chr03	irgsp1_rep	five_prime_UTR	8458131	8458247	.	+	.	Parent=Os03t0260600-01
Chr03	irgsp1_rep	CDS	8458248	8458937	.	+	0	Parent=Os03t0260600-01
Chr03	irgsp1_rep	CDS	8460235	8460774	.	+	0	Parent=Os03t0260600-01
Chr03	irgsp1_rep	three_prime_UTR	8460775	8461066	.	+	.	Parent=Os03t0260600-01
Chr03	irgsp1_rep	mRNA	8487523	8489366	.	+	.	ID=Os03t0261100-01;Name=Os03t0261100-01;Locus_id=Os03g0261100;RAP-DB Gene Symbol Synonym(s)=PLA2-II;RAP-DB Gene Name Synonym(s)=phospholipase A2-II;Oryzabase Gene Symbol Synonym(s)=PLA2-II;Oryzabase Gene Name Synonym(s)=phospholipase A2-II;Note=Low-molecular-weight calcium-dependent phospholipase A2;Transcript_evidence=AK071135,AJ238117;ORF_evidence=Q9XG81;GO=Biological Process: phospholipid metabolic process (GO:0006644),Biological Process: arachidonic acid secretion (GO:0050482),Molecular Function: phospholipase A2 activity (GO:0004623);InterPro=Phospholipase A2 domain superfamily (IPR036444),Phospholipase A2%2C histidine active site (IPR033113);NIAS_FLcDNA=J023076N15;Manual Curation=July 10%2C 2020;Literature_PMID=10608658,10673040;Oryzabase=14490;Expression=AK071135;TENOR=Os03t0261100-01;KEGG=Os03t0261100-01
Chr03	irgsp1_rep	five_prime_UTR	8487523	8487624	.	+	.	Parent=Os03t0261100-01
Chr03	irgsp1_rep	CDS	8487625	8487735	.	+	0	Parent=Os03t0261100-01
Chr03	irgsp1_rep	CDS	8487842	8487887	.	+	0	Parent=Os03t0261100-01
Chr03	irgsp1_rep	CDS	8488206	8488331	.	+	2	Parent=Os03t0261100-01
Chr03	irgsp1_rep	CDS	8488858	8489036	.	+	2	Parent=Os03t0261100-01
Chr03	irgsp1_rep	three_prime_UTR	8489037	8489366	.	+	.	Parent=Os03t0261100-01
Chr03	irgsp1_rep	mRNA	8501364	8505645	.	+	.	ID=Os03t0261500-01;Name=Os03t0261500-01;Locus_id=Os03g0261500;Oryzabase Gene Symbol Synonym(s)=OsDjC26;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C26;Note=Heat shock protein DnaJ%2C N-terminal domain containing protein.;Transcript_evidence=AK064904 (DDBJ%2C Best hit);ORF_evidence=B4FTV3 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095);NIAS_FLcDNA=J013000L19;Oryzabase=12183;Expression=AK064904;TENOR=Os03t0261500-01;KEGG=Os03t0261500-01
Chr03	irgsp1_rep	CDS	8501364	8501608	.	+	0	Parent=Os03t0261500-01
Chr03	irgsp1_rep	CDS	8502130	8502220	.	+	1	Parent=Os03t0261500-01
Chr03	irgsp1_rep	CDS	8502304	8502364	.	+	0	Parent=Os03t0261500-01
Chr03	irgsp1_rep	CDS	8502908	8502985	.	+	2	Parent=Os03t0261500-01
Chr03	irgsp1_rep	CDS	8503121	8503194	.	+	2	Parent=Os03t0261500-01
Chr03	irgsp1_rep	CDS	8503919	8504032	.	+	0	Parent=Os03t0261500-01
Chr03	irgsp1_rep	CDS	8504111	8504218	.	+	0	Parent=Os03t0261500-01
Chr03	irgsp1_rep	CDS	8505167	8505205	.	+	0	Parent=Os03t0261500-01
Chr03	irgsp1_rep	CDS	8505276	8505362	.	+	0	Parent=Os03t0261500-01
Chr03	irgsp1_rep	three_prime_UTR	8505363	8505645	.	+	.	Parent=Os03t0261500-01
Chr03	irgsp1_rep	mRNA	8501479	8505625	.	+	.	ID=Os03t0261500-02;Name=Os03t0261500-02;Locus_id=Os03g0261500;Oryzabase Gene Symbol Synonym(s)=OsDjC26;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C26;Note=Similar to dnaJ subfamily C member 8.;Transcript_evidence=AK061995 (DDBJ%2C Best hit);ORF_evidence=B4FTV3 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095);NIAS_FLcDNA=001-043-C10;Oryzabase=12183;Expression=AK061995;TENOR=Os03t0261500-02;KEGG=Os03t0261500-02
Chr03	irgsp1_rep	five_prime_UTR	8501479	8501519	.	+	.	Parent=Os03t0261500-02
Chr03	irgsp1_rep	CDS	8501520	8501608	.	+	0	Parent=Os03t0261500-02
Chr03	irgsp1_rep	CDS	8502130	8502220	.	+	1	Parent=Os03t0261500-02
Chr03	irgsp1_rep	CDS	8502304	8502364	.	+	0	Parent=Os03t0261500-02
Chr03	irgsp1_rep	CDS	8502908	8502985	.	+	2	Parent=Os03t0261500-02
Chr03	irgsp1_rep	CDS	8503121	8503194	.	+	2	Parent=Os03t0261500-02
Chr03	irgsp1_rep	CDS	8503919	8504032	.	+	0	Parent=Os03t0261500-02
Chr03	irgsp1_rep	CDS	8504111	8504218	.	+	0	Parent=Os03t0261500-02
Chr03	irgsp1_rep	CDS	8505167	8505205	.	+	0	Parent=Os03t0261500-02
Chr03	irgsp1_rep	CDS	8505276	8505362	.	+	0	Parent=Os03t0261500-02
Chr03	irgsp1_rep	three_prime_UTR	8505363	8505625	.	+	.	Parent=Os03t0261500-02
Chr03	irgsp1_rep	mRNA	8531154	8533071	.	-	.	ID=Os03t0261800-01;Name=Os03t0261800-01;Locus_id=Os03g0261800;Note=Protein of unknown function DUF3049 domain containing protein.;Transcript_evidence=AK121181 (DDBJ%2C Best hit);ORF_evidence=A3AG96 (UniProt);InterPro=Protein of unknown function DUF3049 (IPR021410);NIAS_FLcDNA=J023084D19;Expression=AK121181;TENOR=Os03t0261800-01;KEGG=Os03t0261800-01
Chr03	irgsp1_rep	five_prime_UTR	8532483	8533071	.	-	.	Parent=Os03t0261800-01
Chr03	irgsp1_rep	CDS	8531298	8532482	.	-	0	Parent=Os03t0261800-01
Chr03	irgsp1_rep	three_prime_UTR	8531154	8531297	.	-	.	Parent=Os03t0261800-01
Chr03	irgsp1_rep	mRNA	8531062	8532385	.	-	.	ID=Os03t0261800-02;Name=Os03t0261800-02;Locus_id=Os03g0261800;Note=Hypothetical conserved gene.;Transcript_evidence=AK060717 (DDBJ%2C Best hit);ORF_evidence=A3AG96 (UniProt);InterPro=Protein of unknown function DUF3049 (IPR021410);NIAS_FLcDNA=001-031-E06;Expression=AK060717;TENOR=Os03t0261800-02;KEGG=Os03t0261800-02
Chr03	irgsp1_rep	five_prime_UTR	8532384	8532385	.	-	.	Parent=Os03t0261800-02
Chr03	irgsp1_rep	CDS	8531298	8532383	.	-	0	Parent=Os03t0261800-02
Chr03	irgsp1_rep	three_prime_UTR	8531062	8531297	.	-	.	Parent=Os03t0261800-02
Chr03	irgsp1_rep	mRNA	8546973	8552114	.	-	.	ID=Os03t0261900-01;Name=Os03t0261900-01;Locus_id=Os03g0261900;Note=Similar to HEAT repeat family protein%2C expressed.;Transcript_evidence=AK059232 (DDBJ%2C Best hit);ORF_evidence=Q10NR5 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=001-024-E07;TENOR=Os03t0261900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	8552077	8552114	.	-	.	Parent=Os03t0261900-01
Chr03	irgsp1_rep	five_prime_UTR	8551757	8551998	.	-	.	Parent=Os03t0261900-01
Chr03	irgsp1_rep	five_prime_UTR	8551662	8551681	.	-	.	Parent=Os03t0261900-01
Chr03	irgsp1_rep	CDS	8550268	8550285	.	-	0	Parent=Os03t0261900-01
Chr03	irgsp1_rep	CDS	8550081	8550176	.	-	0	Parent=Os03t0261900-01
Chr03	irgsp1_rep	CDS	8549887	8549999	.	-	0	Parent=Os03t0261900-01
Chr03	irgsp1_rep	CDS	8547896	8548031	.	-	1	Parent=Os03t0261900-01
Chr03	irgsp1_rep	CDS	8547699	8547803	.	-	0	Parent=Os03t0261900-01
Chr03	irgsp1_rep	CDS	8547393	8547593	.	-	0	Parent=Os03t0261900-01
Chr03	irgsp1_rep	three_prime_UTR	8546973	8547392	.	-	.	Parent=Os03t0261900-01
Chr03	irgsp1_rep	mRNA	8546948	8551592	.	-	.	ID=Os03t0261900-02;Name=Os03t0261900-02;Locus_id=Os03g0261900;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK100569 (DDBJ%2C Best hit);ORF_evidence=Q10NR4 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023105A03;Expression=AK100569;TENOR=Os03t0261900-02;KEGG=Os03t0261900-02
Chr03	irgsp1_rep	five_prime_UTR	8550912	8551592	.	-	.	Parent=Os03t0261900-02
Chr03	irgsp1_rep	five_prime_UTR	8550779	8550809	.	-	.	Parent=Os03t0261900-02
Chr03	irgsp1_rep	five_prime_UTR	8550682	8550689	.	-	.	Parent=Os03t0261900-02
Chr03	irgsp1_rep	CDS	8550567	8550681	.	-	0	Parent=Os03t0261900-02
Chr03	irgsp1_rep	CDS	8550268	8550482	.	-	2	Parent=Os03t0261900-02
Chr03	irgsp1_rep	CDS	8550081	8550176	.	-	0	Parent=Os03t0261900-02
Chr03	irgsp1_rep	CDS	8549887	8549999	.	-	0	Parent=Os03t0261900-02
Chr03	irgsp1_rep	CDS	8547896	8548031	.	-	1	Parent=Os03t0261900-02
Chr03	irgsp1_rep	CDS	8547699	8547803	.	-	0	Parent=Os03t0261900-02
Chr03	irgsp1_rep	CDS	8547393	8547593	.	-	0	Parent=Os03t0261900-02
Chr03	irgsp1_rep	three_prime_UTR	8546948	8547392	.	-	.	Parent=Os03t0261900-02
Chr03	irgsp1_rep	mRNA	8555879	8556257	.	-	.	ID=Os03t0261950-00;Name=Os03t0261950-00;Locus_id=Os03g0261950;Note=Similar to predicted protein.;Transcript_evidence=EU976184 (DDBJ);ORF_evidence=NP_194494.2 (RefSeq);GO=Biological Process: intracellular protein transport (GO:0006886),Molecular Function: binding (GO:0005488),Molecular Function: protein transporter activity (GO:0008565);InterPro=Importin-beta%2C N-terminal (IPR001494),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);TENOR=Os03t0261950-00;KEGG=Os03t0261950-00
Chr03	irgsp1_rep	five_prime_UTR	8556251	8556257	.	-	.	Parent=Os03t0261950-00
Chr03	irgsp1_rep	CDS	8555879	8556250	.	-	0	Parent=Os03t0261950-00
Chr03	irgsp1_rep	mRNA	8558993	8562806	.	+	.	ID=Os03t0262000-01;Name=Os03t0262000-01;Locus_id=Os03g0262000;Note=Similar to AtPIP5K1.;Transcript_evidence=AK063495 (DDBJ%2C Best hit);ORF_evidence=XP_002890482.1 (RefSeq);GO=Biological Process: phosphatidylinositol metabolic process (GO:0046488),Molecular Function: phosphatidylinositol phosphate kinase activity (GO:0016307);InterPro=Phosphatidylinositol-4-phosphate 5-kinase%2C core (IPR002498),Phosphatidylinositol-4-phosphate 5-kinase%2C core%2C subgroup (IPR016034),Phosphatidylinositol-4-phosphate 5-kinase (IPR023610);NIAS_FLcDNA=001-116-D04;Expression=AK063495;TENOR=Os03t0262000-01;KEGG=Os03t0262000-01 (EC:2.7.1.68)
Chr03	irgsp1_rep	five_prime_UTR	8558993	8559126	.	+	.	Parent=Os03t0262000-01
Chr03	irgsp1_rep	CDS	8559127	8559203	.	+	0	Parent=Os03t0262000-01
Chr03	irgsp1_rep	CDS	8559450	8559512	.	+	1	Parent=Os03t0262000-01
Chr03	irgsp1_rep	CDS	8559613	8559780	.	+	1	Parent=Os03t0262000-01
Chr03	irgsp1_rep	CDS	8559885	8560050	.	+	1	Parent=Os03t0262000-01
Chr03	irgsp1_rep	CDS	8560471	8560581	.	+	0	Parent=Os03t0262000-01
Chr03	irgsp1_rep	CDS	8560692	8560885	.	+	0	Parent=Os03t0262000-01
Chr03	irgsp1_rep	CDS	8560979	8561109	.	+	1	Parent=Os03t0262000-01
Chr03	irgsp1_rep	CDS	8561214	8561313	.	+	2	Parent=Os03t0262000-01
Chr03	irgsp1_rep	CDS	8561952	8562258	.	+	1	Parent=Os03t0262000-01
Chr03	irgsp1_rep	three_prime_UTR	8562259	8562806	.	+	.	Parent=Os03t0262000-01
Chr03	irgsp1_rep	mRNA	8568445	8571825	.	+	.	ID=Os03t0262100-01;Name=Os03t0262100-01;Locus_id=Os03g0262100;Oryzabase Gene Symbol Synonym(s)=OsMed9_2%2C Med9_2;Oryzabase Gene Name Synonym(s)=Mediator 9_2;Note=Exon junction complex%2C Pym domain containing protein.;Transcript_evidence=AK067490 (DDBJ%2C Best hit);ORF_evidence=NP_001150166.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Exon junction complex%2C Pym (IPR015362);NIAS_FLcDNA=J013108L08;Oryzabase=20995;Expression=AK067490;TENOR=Os03t0262100-01;KEGG=Os03t0262100-01
Chr03	irgsp1_rep	five_prime_UTR	8568445	8568573	.	+	.	Parent=Os03t0262100-01
Chr03	irgsp1_rep	CDS	8568574	8568762	.	+	0	Parent=Os03t0262100-01
Chr03	irgsp1_rep	CDS	8568851	8568961	.	+	0	Parent=Os03t0262100-01
Chr03	irgsp1_rep	CDS	8570524	8570751	.	+	0	Parent=Os03t0262100-01
Chr03	irgsp1_rep	CDS	8571278	8571415	.	+	0	Parent=Os03t0262100-01
Chr03	irgsp1_rep	three_prime_UTR	8571416	8571825	.	+	.	Parent=Os03t0262100-01
Chr03	irgsp1_rep	mRNA	8573021	8577500	.	+	.	ID=Os03t0262150-01;Name=Os03t0262150-01;Locus_id=Os03g0262150;Note=Hypothetical gene.;Transcript_evidence=AK242766 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090052O21;TENOR=Os03t0262150-01;KEGG=Os03t0262150-01
Chr03	irgsp1_rep	five_prime_UTR	8573021	8573527	.	+	.	Parent=Os03t0262150-01
Chr03	irgsp1_rep	five_prime_UTR	8573783	8574043	.	+	.	Parent=Os03t0262150-01
Chr03	irgsp1_rep	five_prime_UTR	8574185	8574292	.	+	.	Parent=Os03t0262150-01
Chr03	irgsp1_rep	five_prime_UTR	8574636	8574695	.	+	.	Parent=Os03t0262150-01
Chr03	irgsp1_rep	five_prime_UTR	8574806	8574881	.	+	.	Parent=Os03t0262150-01
Chr03	irgsp1_rep	five_prime_UTR	8575082	8575239	.	+	.	Parent=Os03t0262150-01
Chr03	irgsp1_rep	five_prime_UTR	8575371	8575403	.	+	.	Parent=Os03t0262150-01
Chr03	irgsp1_rep	CDS	8575404	8575433	.	+	0	Parent=Os03t0262150-01
Chr03	irgsp1_rep	CDS	8575545	8575629	.	+	0	Parent=Os03t0262150-01
Chr03	irgsp1_rep	CDS	8576315	8576511	.	+	2	Parent=Os03t0262150-01
Chr03	irgsp1_rep	three_prime_UTR	8576512	8577500	.	+	.	Parent=Os03t0262150-01
Chr03	irgsp1_rep	mRNA	8573083	8577492	.	-	.	ID=Os03t0262200-00;Name=Os03t0262200-00;Locus_id=Os03g0262200;Note=Similar to predicted protein.;Transcript_evidence=CT835203 (DDBJ%2C Best hit);ORF_evidence=Q84QA1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os03t0262200-00;KEGG=Os03t0262200-00
Chr03	irgsp1_rep	five_prime_UTR	8577331	8577492	.	-	.	Parent=Os03t0262200-00
Chr03	irgsp1_rep	CDS	8576315	8577330	.	-	0	Parent=Os03t0262200-00
Chr03	irgsp1_rep	CDS	8575545	8575629	.	-	1	Parent=Os03t0262200-00
Chr03	irgsp1_rep	CDS	8575371	8575433	.	-	0	Parent=Os03t0262200-00
Chr03	irgsp1_rep	CDS	8575082	8575239	.	-	0	Parent=Os03t0262200-00
Chr03	irgsp1_rep	CDS	8574806	8574881	.	-	1	Parent=Os03t0262200-00
Chr03	irgsp1_rep	CDS	8574636	8574695	.	-	0	Parent=Os03t0262200-00
Chr03	irgsp1_rep	CDS	8574185	8574292	.	-	0	Parent=Os03t0262200-00
Chr03	irgsp1_rep	CDS	8573816	8574043	.	-	0	Parent=Os03t0262200-00
Chr03	irgsp1_rep	three_prime_UTR	8573783	8573815	.	-	.	Parent=Os03t0262200-00
Chr03	irgsp1_rep	three_prime_UTR	8573083	8573527	.	-	.	Parent=Os03t0262200-00
Chr03	irgsp1_rep	mRNA	8581503	8596767	.	-	.	ID=Os03t0262300-01;Name=Os03t0262300-01;Locus_id=Os03g0262300;Note=Hypothetical conserved gene.;Transcript_evidence=AK243361 (DDBJ%2C Best hit);ORF_evidence=B8AKC3 (UniProt);GO=Biological Process: DNA repair (GO:0006281),Biological Process: cell cycle (GO:0007049),Cellular Component: nucleus (GO:0005634),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: DNA binding (GO:0003677),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),Checkpoint protein Rad24 (IPR004582),AT hook%2C DNA-binding motif (IPR017956);NIAS_FLcDNA=J100061K16;TENOR=Os03t0262300-01;KEGG=Os03t0262300-01
Chr03	irgsp1_rep	five_prime_UTR	8596611	8596767	.	-	.	Parent=Os03t0262300-01
Chr03	irgsp1_rep	CDS	8596344	8596610	.	-	0	Parent=Os03t0262300-01
Chr03	irgsp1_rep	CDS	8594955	8595018	.	-	0	Parent=Os03t0262300-01
Chr03	irgsp1_rep	CDS	8594670	8594774	.	-	2	Parent=Os03t0262300-01
Chr03	irgsp1_rep	CDS	8594026	8594225	.	-	2	Parent=Os03t0262300-01
Chr03	irgsp1_rep	CDS	8593202	8593375	.	-	0	Parent=Os03t0262300-01
Chr03	irgsp1_rep	CDS	8592904	8593068	.	-	0	Parent=Os03t0262300-01
Chr03	irgsp1_rep	CDS	8592632	8592747	.	-	0	Parent=Os03t0262300-01
Chr03	irgsp1_rep	CDS	8591377	8591431	.	-	1	Parent=Os03t0262300-01
Chr03	irgsp1_rep	CDS	8590984	8591181	.	-	0	Parent=Os03t0262300-01
Chr03	irgsp1_rep	CDS	8590449	8590508	.	-	0	Parent=Os03t0262300-01
Chr03	irgsp1_rep	CDS	8588433	8588515	.	-	0	Parent=Os03t0262300-01
Chr03	irgsp1_rep	CDS	8587161	8587372	.	-	1	Parent=Os03t0262300-01
Chr03	irgsp1_rep	CDS	8586951	8587042	.	-	2	Parent=Os03t0262300-01
Chr03	irgsp1_rep	CDS	8586730	8586859	.	-	0	Parent=Os03t0262300-01
Chr03	irgsp1_rep	CDS	8584035	8585278	.	-	2	Parent=Os03t0262300-01
Chr03	irgsp1_rep	CDS	8583677	8583960	.	-	0	Parent=Os03t0262300-01
Chr03	irgsp1_rep	CDS	8582621	8582788	.	-	1	Parent=Os03t0262300-01
Chr03	irgsp1_rep	CDS	8581804	8581939	.	-	1	Parent=Os03t0262300-01
Chr03	irgsp1_rep	three_prime_UTR	8581503	8581803	.	-	.	Parent=Os03t0262300-01
Chr03	irgsp1_rep	mRNA	8597173	8600595	.	-	.	ID=Os03t0262400-01;Name=Os03t0262400-01;Locus_id=Os03g0262400;Note=Similar to Eukaryotic translation initiation factor 4E type 3 (eIF4E type 3) (eIF-4E type 3) (mRNA cap-binding protein type 3) (Novel cap-binding protein) (nCBP).;Transcript_evidence=AK059989 (DDBJ%2C Best hit);ORF_evidence=A3RCV9 (UniProt);GO=Biological Process: translational initiation (GO:0006413),Cellular Component: cytoplasm (GO:0005737),Molecular Function: RNA binding (GO:0003723),Molecular Function: translation initiation factor activity (GO:0003743);InterPro=Translation Initiation factor eIF- 4e (IPR001040),Eukaryotic translation initiation factor 4E (eIF-4E)%2C conserved site (IPR019770),Translation Initiation factor eIF- 4e-like  domain (IPR023398);NIAS_FLcDNA=006-301-A08;Expression=AK059989;TENOR=Os03t0262400-01;KEGG=Os03t0262400-01
Chr03	irgsp1_rep	five_prime_UTR	8600512	8600595	.	-	.	Parent=Os03t0262400-01
Chr03	irgsp1_rep	CDS	8600356	8600511	.	-	0	Parent=Os03t0262400-01
Chr03	irgsp1_rep	CDS	8600106	8600198	.	-	0	Parent=Os03t0262400-01
Chr03	irgsp1_rep	CDS	8599910	8600014	.	-	0	Parent=Os03t0262400-01
Chr03	irgsp1_rep	CDS	8599729	8599806	.	-	0	Parent=Os03t0262400-01
Chr03	irgsp1_rep	CDS	8597541	8597660	.	-	0	Parent=Os03t0262400-01
Chr03	irgsp1_rep	CDS	8597328	8597459	.	-	0	Parent=Os03t0262400-01
Chr03	irgsp1_rep	three_prime_UTR	8597173	8597327	.	-	.	Parent=Os03t0262400-01
Chr03	irgsp1_rep	mRNA	8607999	8609105	.	-	.	ID=Os03t0262500-01;Name=Os03t0262500-01;Locus_id=Os03g0262500;Note=Hypothetical conserved gene.;Transcript_evidence=AK071153 (DDBJ%2C Best hit);ORF_evidence=B9GDD2 (UniProt);NIAS_FLcDNA=J023078H24;Expression=AK071153;TENOR=Os03t0262500-01;KEGG=Os03t0262500-01
Chr03	irgsp1_rep	five_prime_UTR	8608952	8609105	.	-	.	Parent=Os03t0262500-01
Chr03	irgsp1_rep	CDS	8608388	8608951	.	-	0	Parent=Os03t0262500-01
Chr03	irgsp1_rep	three_prime_UTR	8607999	8608387	.	-	.	Parent=Os03t0262500-01
Chr03	irgsp1_rep	mRNA	8603939	8609100	.	-	.	ID=Os03t0262500-02;Name=Os03t0262500-02;Locus_id=Os03g0262500;Note=Molecular chaperone%2C heat shock protein%2C Hsp40%2C DnaJ domain containing protein.;Transcript_evidence=AK120384 (DDBJ%2C Best hit);ORF_evidence=B4FR07 (UniProt);NIAS_FLcDNA=J013073E14;Expression=AK120384;TENOR=Os03t0262500-02;KEGG=Os03t0262500-02
Chr03	irgsp1_rep	five_prime_UTR	8608148	8609100	.	-	.	Parent=Os03t0262500-02
Chr03	irgsp1_rep	CDS	8608007	8608147	.	-	0	Parent=Os03t0262500-02
Chr03	irgsp1_rep	CDS	8607831	8607935	.	-	0	Parent=Os03t0262500-02
Chr03	irgsp1_rep	CDS	8607663	8607713	.	-	0	Parent=Os03t0262500-02
Chr03	irgsp1_rep	CDS	8606930	8606947	.	-	0	Parent=Os03t0262500-02
Chr03	irgsp1_rep	three_prime_UTR	8606704	8606929	.	-	.	Parent=Os03t0262500-02
Chr03	irgsp1_rep	three_prime_UTR	8603939	8606613	.	-	.	Parent=Os03t0262500-02
Chr03	irgsp1_rep	mRNA	8623321	8624555	.	+	.	ID=Os03t0262700-01;Name=Os03t0262700-01;Locus_id=Os03g0262700;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK061109 (DDBJ%2C Best hit),AK099159 (DDBJ%2C Best hit);ORF_evidence=B4FP99 (UniProt);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=006-207-C07,J023074F15;TENOR=Os03t0262700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	8623321	8623465	.	+	.	Parent=Os03t0262700-01
Chr03	irgsp1_rep	CDS	8623466	8624095	.	+	0	Parent=Os03t0262700-01
Chr03	irgsp1_rep	CDS	8624197	8624283	.	+	0	Parent=Os03t0262700-01
Chr03	irgsp1_rep	three_prime_UTR	8624284	8624555	.	+	.	Parent=Os03t0262700-01
Chr03	irgsp1_rep	mRNA	8623354	8624549	.	+	.	ID=Os03t0262700-02;Name=Os03t0262700-02;Locus_id=Os03g0262700;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK099322 (DDBJ%2C Best hit),AK104530 (DDBJ%2C Best hit);ORF_evidence=B4FP99 (UniProt);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=J033014L15,006-304-A05;TENOR=Os03t0262700-02
Chr03	irgsp1_rep	five_prime_UTR	8623354	8623465	.	+	.	Parent=Os03t0262700-02
Chr03	irgsp1_rep	CDS	8623466	8624095	.	+	0	Parent=Os03t0262700-02
Chr03	irgsp1_rep	CDS	8624197	8624283	.	+	0	Parent=Os03t0262700-02
Chr03	irgsp1_rep	three_prime_UTR	8624284	8624549	.	+	.	Parent=Os03t0262700-02
Chr03	irgsp1_rep	mRNA	8629862	8635160	.	+	.	ID=Os03t0262900-01;Name=Os03t0262900-01;Locus_id=Os03g0262900;CGSNL Gene Symbol=GLUP6;CGSNL Gene Name=GLUTELIN PRECURSOR 6;Oryzabase Gene Symbol Synonym(s)=glup6(t)%2C Glup6(t)%2C Glup6%2C OsVPS9A%2C VPS9a%2C GPA2/VPS9a%2C GPA2%2C GLUP6/GEF;Oryzabase Gene Name Synonym(s)=glutelin precursor6%2C glutelin precursor 6%2C Glutelin precursor-6%2C GLUTELIN PRECURSOR ACCUMULATION2%2C glutelin precursor accumulation 2%2C Vacuolar sorting protein9 domain-containing protein%2C Rab5-GEF%2C glutelin precursor mutant6%2C Rab5a-guanine exchange factor;Note=Hypothetical conserved gene.;Transcript_evidence=AK070551 (DDBJ%2C Best hit);ORF_evidence=Q10NQ3 (UniProt);NIAS_FLcDNA=J023061L19;Oryzabase=707;Expression=AK070551;TENOR=Os03t0262900-01;KEGG=Os03t0262900-01
Chr03	irgsp1_rep	five_prime_UTR	8629862	8629969	.	+	.	Parent=Os03t0262900-01
Chr03	irgsp1_rep	CDS	8629970	8630088	.	+	0	Parent=Os03t0262900-01
Chr03	irgsp1_rep	CDS	8630986	8631128	.	+	1	Parent=Os03t0262900-01
Chr03	irgsp1_rep	CDS	8632118	8632125	.	+	2	Parent=Os03t0262900-01
Chr03	irgsp1_rep	three_prime_UTR	8632126	8632288	.	+	.	Parent=Os03t0262900-01
Chr03	irgsp1_rep	three_prime_UTR	8632671	8635160	.	+	.	Parent=Os03t0262900-01
Chr03	irgsp1_rep	mRNA	8629862	8635160	.	+	.	ID=Os03t0262900-02;Name=Os03t0262900-02;Locus_id=Os03g0262900;RAP-DB Gene Symbol Synonym(s)=GLUP6/GEF%2C OsVPS9A%2C VPS9a%2C GPA2/VPS9a%2C GPA2%2C GLUP6;RAP-DB Gene Name Synonym(s)=GLUTELIN PRECURSOR ACCUMULATION2%2C glutelin precursor accumulation 2%2C Vacuolar sorting protein9 domain-containing protein%2C GLUTELIN PRECURSOR 6;CGSNL Gene Symbol=GLUP6;CGSNL Gene Name=GLUTELIN PRECURSOR 6;Oryzabase Gene Symbol Synonym(s)=glup6(t)%2C Glup6(t)%2C Glup6%2C OsVPS9A%2C VPS9a%2C GPA2/VPS9a%2C GPA2%2C GLUP6/GEF;Oryzabase Gene Name Synonym(s)=glutelin precursor6%2C glutelin precursor 6%2C Glutelin precursor-6%2C GLUTELIN PRECURSOR ACCUMULATION2%2C glutelin precursor accumulation 2%2C Vacuolar sorting protein9 domain-containing protein%2C Rab5-GEF%2C glutelin precursor mutant6%2C Rab5a-guanine exchange factor;Note=Activator of Rab5 GTPase%2C Intracellular transport of the proglutelin;Transcript_evidence=Inferred from literature;ORF_evidence=Q10NQ3;InterPro=Vacuolar sorting protein 9 (IPR003123),Vacuolar sorting protein 9%2C subgroup (IPR013995);Manual Curation=June 29%2C 2016;Literature_PMID=24488962,23723154,23580596;Oryzabase=707
Chr03	irgsp1_rep	five_prime_UTR	8629862	8629969	.	+	.	Parent=Os03t0262900-02
Chr03	irgsp1_rep	CDS	8629970	8630088	.	+	0	Parent=Os03t0262900-02
Chr03	irgsp1_rep	CDS	8630986	8631133	.	+	1	Parent=Os03t0262900-02
Chr03	irgsp1_rep	CDS	8632118	8632288	.	+	0	Parent=Os03t0262900-02
Chr03	irgsp1_rep	CDS	8632671	8632850	.	+	0	Parent=Os03t0262900-02
Chr03	irgsp1_rep	CDS	8633775	8634599	.	+	0	Parent=Os03t0262900-02
Chr03	irgsp1_rep	three_prime_UTR	8634600	8635160	.	+	.	Parent=Os03t0262900-02
Chr03	irgsp1_rep	mRNA	8635965	8637099	.	-	.	ID=Os03t0263000-01;Name=Os03t0263000-01;Locus_id=Os03g0263000;CGSNL Gene Symbol=ERF9;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 9;Oryzabase Gene Symbol Synonym(s)=OsERF#009%2C OsERF009%2C OsERF9%2C AP2/EREBP#135%2C AP2/EREBP135;Oryzabase Gene Name Synonym(s)=ethylene response factor 9%2C APETALA2/ethylene-responsive element binding protein 135;Note=Similar to TINY-like protein.;Transcript_evidence=AK068934 (DDBJ%2C Best hit);ORF_evidence=C9WA62 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J023003E11;Oryzabase=10535;Expression=AK068934;TENOR=Os03t0263000-01;KEGG=Os03t0263000-01
Chr03	irgsp1_rep	five_prime_UTR	8637045	8637099	.	-	.	Parent=Os03t0263000-01
Chr03	irgsp1_rep	CDS	8636268	8637044	.	-	0	Parent=Os03t0263000-01
Chr03	irgsp1_rep	three_prime_UTR	8635965	8636267	.	-	.	Parent=Os03t0263000-01
Chr03	irgsp1_rep	mRNA	8651497	8653224	.	+	.	ID=Os03t0263300-01;Name=Os03t0263300-01;Locus_id=Os03g0263300;RAP-DB Gene Symbol Synonym(s)=NSP2%2C Os NSP2%2C NSP2;RAP-DB Gene Name Synonym(s)=NODULATION SIGNALING PATHWAY 2%2C NODULATION SIGNALING PATHWAY2%2C Symbiotic GRAS-Type Transcription Factor NSP2;CGSNL Gene Symbol=NSP2;CGSNL Gene Name=NODULATION SIGNALING PATHWAY 2;Oryzabase Gene Symbol Synonym(s)=Os NSP2%2C OsNSP2%2C OsGRAS-13%2C OsGRAS13%2C GRAS-13%2C GRAS13;Oryzabase Gene Name Synonym(s)=Nodulation Signalling Pathway2%2C Symbiotic GRAS-Type Transcription Factor NSP2%2C GRAS protein 13;Note=GRAS-domain transcription factor%2C Strigolactone (SL) biosynthesis;Transcript_evidence=Inferred from literature;ORF_evidence=Q84Q92;InterPro=Transcription factor GRAS (IPR005202);Manual Curation=September 26%2C 2014;Literature_PMID=22039214,20719766;Oryzabase=9725;TENOR=Os03t0263300-00
Chr03	irgsp1_rep	CDS	8651497	8653224	.	+	0	Parent=Os03t0263300-01
Chr03	irgsp1_rep	mRNA	8652008	8652440	.	-	.	ID=Os03t0263350-00;Name=Os03t0263350-00;Locus_id=Os03g0263350;Note=Hypothetical protein.;Transcript_evidence=BT085249 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0263350-00
Chr03	irgsp1_rep	five_prime_UTR	8652258	8652440	.	-	.	Parent=Os03t0263350-00
Chr03	irgsp1_rep	CDS	8652008	8652257	.	-	0	Parent=Os03t0263350-00
Chr03	irgsp1_rep	mRNA	8656444	8660017	.	+	.	ID=Os03t0263400-01;Name=Os03t0263400-01;Locus_id=Os03g0263400;CGSNL Gene Symbol=PT16;CGSNL Gene Name=POSPHATE TRANSPORTER 16;Oryzabase Gene Symbol Synonym(s)=OsPT16;Oryzabase Gene Name Synonym(s)=phosphate transporter 16;Note=Similar to mitochondrial phosphate transporter.;Transcript_evidence=AK058971 (DDBJ%2C Best hit);ORF_evidence=NP_001104842.1 (RefSeq);InterPro=Mitochondrial substrate/solute carrier (IPR018108);NIAS_FLcDNA=001-020-D01;Oryzabase=21399;TENOR=Os03t0263400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	8656444	8656723	.	+	.	Parent=Os03t0263400-01
Chr03	irgsp1_rep	CDS	8656724	8657077	.	+	0	Parent=Os03t0263400-01
Chr03	irgsp1_rep	three_prime_UTR	8657078	8657508	.	+	.	Parent=Os03t0263400-01
Chr03	irgsp1_rep	three_prime_UTR	8657597	8657640	.	+	.	Parent=Os03t0263400-01
Chr03	irgsp1_rep	three_prime_UTR	8659073	8659242	.	+	.	Parent=Os03t0263400-01
Chr03	irgsp1_rep	three_prime_UTR	8659360	8659484	.	+	.	Parent=Os03t0263400-01
Chr03	irgsp1_rep	three_prime_UTR	8659573	8660017	.	+	.	Parent=Os03t0263400-01
Chr03	irgsp1_rep	mRNA	8660232	8663021	.	-	.	ID=Os03t0263500-01;Name=Os03t0263500-01;Locus_id=Os03g0263500;Note=Similar to Splicing factor 3A subunit 2 (Spliceosome associated protein 62) (SAP 62) (SF3a66).;Transcript_evidence=AK106060 (DDBJ%2C Best hit);ORF_evidence=XP_002881233.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2-type matrin (IPR000690),Zinc finger%2C U1-type (IPR003604),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=001-206-F12;Expression=AK106060;TENOR=Os03t0263500-01;KEGG=Os03t0263500-01
Chr03	irgsp1_rep	five_prime_UTR	8662963	8663021	.	-	.	Parent=Os03t0263500-01
Chr03	irgsp1_rep	CDS	8662811	8662962	.	-	0	Parent=Os03t0263500-01
Chr03	irgsp1_rep	CDS	8662551	8662720	.	-	1	Parent=Os03t0263500-01
Chr03	irgsp1_rep	CDS	8661783	8661859	.	-	2	Parent=Os03t0263500-01
Chr03	irgsp1_rep	CDS	8661224	8661289	.	-	0	Parent=Os03t0263500-01
Chr03	irgsp1_rep	CDS	8661041	8661115	.	-	0	Parent=Os03t0263500-01
Chr03	irgsp1_rep	CDS	8660886	8660960	.	-	0	Parent=Os03t0263500-01
Chr03	irgsp1_rep	CDS	8660435	8660785	.	-	0	Parent=Os03t0263500-01
Chr03	irgsp1_rep	three_prime_UTR	8660232	8660434	.	-	.	Parent=Os03t0263500-01
Chr03	irgsp1_rep	mRNA	8664268	8666146	.	-	.	ID=Os03t0263600-01;Name=Os03t0263600-01;Locus_id=Os03g0263600;RAP-DB Gene Symbol Synonym(s)=OsSTRL2;RAP-DB Gene Name Synonym(s)=STR-like 2;Oryzabase Gene Symbol Synonym(s)=OsSTRL2%2C STRL2;Oryzabase Gene Name Synonym(s)=STR-like 2;Note=Atypical strictosidine synthase%2C Regulation of anther development and pollen wall formation;Transcript_evidence=AK100452;ORF_evidence=Q84Q89;GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: strictosidine synthase activity (GO:0016844);InterPro=Six-bladed beta-propeller%2C TolB-like (IPR011042),Strictosidine synthase%2C conserved region (IPR018119);NIAS_FLcDNA=J023091D01;Manual Curation=February 27%2C 2018;Literature_PMID=28761138;Oryzabase=21789;Expression=AK100452;TENOR=Os03t0263600-01;KEGG=Os03t0263600-01;Subcellular location=endoplasmic reticulum (GO:0005783)
Chr03	irgsp1_rep	five_prime_UTR	8666071	8666146	.	-	.	Parent=Os03t0263600-01
Chr03	irgsp1_rep	CDS	8665685	8666070	.	-	0	Parent=Os03t0263600-01
Chr03	irgsp1_rep	CDS	8665306	8665590	.	-	1	Parent=Os03t0263600-01
Chr03	irgsp1_rep	CDS	8665047	8665214	.	-	1	Parent=Os03t0263600-01
Chr03	irgsp1_rep	CDS	8664510	8664954	.	-	1	Parent=Os03t0263600-01
Chr03	irgsp1_rep	three_prime_UTR	8664268	8664509	.	-	.	Parent=Os03t0263600-01
Chr03	irgsp1_rep	mRNA	8668092	8671028	.	+	.	ID=Os03t0263700-01;Name=Os03t0263700-01;Locus_id=Os03g0263700;Note=Similar to glycine-rich protein.;Transcript_evidence=AK071748 (DDBJ%2C Best hit);ORF_evidence=NP_192563.2 (RefSeq);InterPro=Selenoprotein SelK/SelG (IPR024491);NIAS_FLcDNA=J023110K01;Expression=AK071748;TENOR=Os03t0263700-01;KEGG=Os03t0263700-01
Chr03	irgsp1_rep	five_prime_UTR	8668092	8668209	.	+	.	Parent=Os03t0263700-01
Chr03	irgsp1_rep	CDS	8668210	8668228	.	+	0	Parent=Os03t0263700-01
Chr03	irgsp1_rep	CDS	8670286	8670389	.	+	2	Parent=Os03t0263700-01
Chr03	irgsp1_rep	CDS	8670505	8670670	.	+	0	Parent=Os03t0263700-01
Chr03	irgsp1_rep	CDS	8670753	8670787	.	+	2	Parent=Os03t0263700-01
Chr03	irgsp1_rep	three_prime_UTR	8670788	8671028	.	+	.	Parent=Os03t0263700-01
Chr03	irgsp1_rep	mRNA	8673598	8676464	.	+	.	ID=Os03t0263800-01;Name=Os03t0263800-01;Locus_id=Os03g0263800;Note=S-ribonuclease binding protein%2C SBP1%2C pollen domain containing protein.;Transcript_evidence=AK061795 (DDBJ%2C Best hit);ORF_evidence=B6TK55 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),S-ribonuclease binding protein%2C SBP1%2C pollen (IPR017066);NIAS_FLcDNA=001-039-G03;Expression=AK061795;TENOR=Os03t0263800-01;KEGG=Os03t0263800-01
Chr03	irgsp1_rep	five_prime_UTR	8673598	8673695	.	+	.	Parent=Os03t0263800-01
Chr03	irgsp1_rep	CDS	8673696	8673796	.	+	0	Parent=Os03t0263800-01
Chr03	irgsp1_rep	CDS	8673886	8673983	.	+	1	Parent=Os03t0263800-01
Chr03	irgsp1_rep	CDS	8674098	8674396	.	+	2	Parent=Os03t0263800-01
Chr03	irgsp1_rep	CDS	8675822	8676352	.	+	0	Parent=Os03t0263800-01
Chr03	irgsp1_rep	three_prime_UTR	8676353	8676464	.	+	.	Parent=Os03t0263800-01
Chr03	irgsp1_rep	mRNA	8673686	8676510	.	+	.	ID=Os03t0263800-02;Name=Os03t0263800-02;Locus_id=Os03g0263800;Note=S-ribonuclease binding protein%2C SBP1%2C pollen domain containing protein.;Transcript_evidence=AK099103 (DDBJ%2C Best hit);ORF_evidence=B6TK55 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),S-ribonuclease binding protein%2C SBP1%2C pollen (IPR017066);NIAS_FLcDNA=J023031B11;Expression=AK099103;TENOR=Os03t0263800-02;KEGG=Os03t0263800-02
Chr03	irgsp1_rep	five_prime_UTR	8673686	8673695	.	+	.	Parent=Os03t0263800-02
Chr03	irgsp1_rep	CDS	8673696	8673796	.	+	0	Parent=Os03t0263800-02
Chr03	irgsp1_rep	CDS	8673886	8673983	.	+	1	Parent=Os03t0263800-02
Chr03	irgsp1_rep	CDS	8674098	8674396	.	+	2	Parent=Os03t0263800-02
Chr03	irgsp1_rep	CDS	8675822	8676352	.	+	0	Parent=Os03t0263800-02
Chr03	irgsp1_rep	three_prime_UTR	8676353	8676510	.	+	.	Parent=Os03t0263800-02
Chr03	irgsp1_rep	mRNA	8679164	8682334	.	+	.	ID=Os03t0263900-01;Name=Os03t0263900-01;Locus_id=Os03g0263900;Note=EF-HAND 2 domain containing protein.;Transcript_evidence=AK121215 (DDBJ%2C Best hit);ORF_evidence=NP_001147573.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C ZZ-type (IPR000433),Tetratricopeptide-like helical (IPR011990),EF-hand-like domain (IPR011992),Tetratricopeptide repeat-containing (IPR013026),EF-HAND 2 (IPR018249),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J023089O12;Expression=AK121215;TENOR=Os03t0263900-01;KEGG=Os03t0263900-01
Chr03	irgsp1_rep	five_prime_UTR	8679164	8679339	.	+	.	Parent=Os03t0263900-01
Chr03	irgsp1_rep	CDS	8679340	8681886	.	+	0	Parent=Os03t0263900-01
Chr03	irgsp1_rep	three_prime_UTR	8681887	8682334	.	+	.	Parent=Os03t0263900-01
Chr03	irgsp1_rep	mRNA	8679830	8680692	.	-	.	ID=Os03t0263950-00;Name=Os03t0263950-00;Locus_id=Os03g0263950;Note=Non-protein coding transcript.;Transcript_evidence=EU941128 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0263950-00
Chr03	irgsp1_rep	exon	8680456	8680692	.	-	.	Parent=Os03t0263950-00
Chr03	irgsp1_rep	exon	8679830	8680107	.	-	.	Parent=Os03t0263950-00
Chr03	irgsp1_rep	mRNA	8683771	8687476	.	-	.	ID=Os03t0264000-01;Name=Os03t0264000-01;Locus_id=Os03g0264000;Note=ASC1-like protein 3 (Alternaria stem canker resistance-like protein 3).;Transcript_evidence=AK101372 (DDBJ%2C Best hit);ORF_evidence=B4FBX8 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=TRAM/LAG1/CLN8 homology domain (IPR006634),Longevity assurance%2C LAG1/LAC1 (IPR016439);NIAS_FLcDNA=J033035N13;Expression=AK101372;TENOR=Os03t0264000-01;KEGG=Os03t0264000-01
Chr03	irgsp1_rep	five_prime_UTR	8687251	8687476	.	-	.	Parent=Os03t0264000-01
Chr03	irgsp1_rep	CDS	8687146	8687250	.	-	0	Parent=Os03t0264000-01
Chr03	irgsp1_rep	CDS	8686115	8686323	.	-	0	Parent=Os03t0264000-01
Chr03	irgsp1_rep	CDS	8685518	8685673	.	-	1	Parent=Os03t0264000-01
Chr03	irgsp1_rep	CDS	8684832	8685017	.	-	1	Parent=Os03t0264000-01
Chr03	irgsp1_rep	CDS	8684561	8684739	.	-	1	Parent=Os03t0264000-01
Chr03	irgsp1_rep	CDS	8684175	8684194	.	-	2	Parent=Os03t0264000-01
Chr03	irgsp1_rep	three_prime_UTR	8683771	8684174	.	-	.	Parent=Os03t0264000-01
Chr03	irgsp1_rep	mRNA	8691493	8692335	.	-	.	ID=Os03t0264075-00;Name=Os03t0264075-00;Locus_id=Os03g0264075;Note=Conserved hypothetical protein.;Transcript_evidence=AK369629 (DDBJ);ORF_evidence=Q84QB9 (UniProt);TENOR=Os03t0264075-00
Chr03	irgsp1_rep	CDS	8691493	8692335	.	-	0	Parent=Os03t0264075-00
Chr03	irgsp1_rep	mRNA	8698346	8702233	.	-	.	ID=Os03t0264150-01;Name=Os03t0264150-01;Locus_id=Os03g0264150;Note=Hypothetical gene.;Transcript_evidence=AK240704 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J043017C19;TENOR=Os03t0264150-01;KEGG=Os03t0264150-01
Chr03	irgsp1_rep	five_prime_UTR	8701385	8702233	.	-	.	Parent=Os03t0264150-01
Chr03	irgsp1_rep	CDS	8701245	8701384	.	-	0	Parent=Os03t0264150-01
Chr03	irgsp1_rep	CDS	8700899	8701046	.	-	1	Parent=Os03t0264150-01
Chr03	irgsp1_rep	three_prime_UTR	8700896	8700898	.	-	.	Parent=Os03t0264150-01
Chr03	irgsp1_rep	three_prime_UTR	8700407	8700644	.	-	.	Parent=Os03t0264150-01
Chr03	irgsp1_rep	three_prime_UTR	8700119	8700329	.	-	.	Parent=Os03t0264150-01
Chr03	irgsp1_rep	three_prime_UTR	8699814	8699938	.	-	.	Parent=Os03t0264150-01
Chr03	irgsp1_rep	three_prime_UTR	8698768	8699028	.	-	.	Parent=Os03t0264150-01
Chr03	irgsp1_rep	three_prime_UTR	8698346	8698605	.	-	.	Parent=Os03t0264150-01
Chr03	irgsp1_rep	mRNA	8698844	8701934	.	+	.	ID=Os03t0264300-00;Name=Os03t0264300-00;Locus_id=Os03g0264300;CGSNL Gene Symbol=RLCK106;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 106;Oryzabase Gene Symbol Synonym(s)=OsRLCK106;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 106;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=AK251566 (DDBJ);ORF_evidence=Q84QB8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);Oryzabase=18814;TENOR=Os03t0264300-00;KEGG=Os03t0264300-00
Chr03	irgsp1_rep	five_prime_UTR	8698844	8698940	.	+	.	Parent=Os03t0264300-00
Chr03	irgsp1_rep	CDS	8698941	8699028	.	+	0	Parent=Os03t0264300-00
Chr03	irgsp1_rep	CDS	8699814	8699938	.	+	2	Parent=Os03t0264300-00
Chr03	irgsp1_rep	CDS	8700119	8700329	.	+	0	Parent=Os03t0264300-00
Chr03	irgsp1_rep	CDS	8700407	8700644	.	+	2	Parent=Os03t0264300-00
Chr03	irgsp1_rep	CDS	8700896	8701046	.	+	1	Parent=Os03t0264300-00
Chr03	irgsp1_rep	CDS	8701245	8701610	.	+	0	Parent=Os03t0264300-00
Chr03	irgsp1_rep	three_prime_UTR	8701611	8701934	.	+	.	Parent=Os03t0264300-00
Chr03	irgsp1_rep	mRNA	8702881	8707258	.	-	.	ID=Os03t0264400-01;Name=Os03t0264400-01;Locus_id=Os03g0264400;RAP-DB Gene Symbol Synonym(s)=OASA2;RAP-DB Gene Name Synonym(s)=anthranilate synthase alpha subunit 2;CGSNL Gene Symbol=ASA2;CGSNL Gene Name=ANTHRANILATE SYNTHASE ALPHA-SUBUNIT 2;Oryzabase Gene Symbol Synonym(s)=OASA2 (%3DASA2)%2C OsASA2%2C OASA2%2C ASalpha2%2C OsASalpha2;Oryzabase Gene Name Synonym(s)=anthranilate synthase alpha subunit 2%2C Anthranilate synthase alpha 2 subunit;Note=&alpha%3B-subunit of anthranilate synthase%2C Tryptophan biosynthesis;Transcript_evidence=AK105648;ORF_evidence=Q9XJ29;GO=Biological Process: tryptophan biosynthetic process (GO:0000162),Biological Process: biosynthetic process (GO:0009058),Molecular Function: anthranilate synthase activity (GO:0004049);InterPro=ADC synthase (IPR005801),Anthranilate synthase component I-like (IPR019999),Anthranilate synthase component I%2C PabB-like (IPR005256),Anthranilate synthase component I%2C N-terminal (IPR006805),Chorismate-utilising enzyme%2C C-terminal (IPR015890);NIAS_FLcDNA=001-200-F09;Manual Curation=September 7%2C 2020;Literature_PMID=21543727;Oryzabase=6743;Expression=AK105648;TENOR=Os03t0264400-01;KEGG=Os03t0264400-01 (EC:4.1.3.27)
Chr03	irgsp1_rep	five_prime_UTR	8707238	8707258	.	-	.	Parent=Os03t0264400-01
Chr03	irgsp1_rep	CDS	8706827	8707237	.	-	0	Parent=Os03t0264400-01
Chr03	irgsp1_rep	CDS	8706519	8706708	.	-	0	Parent=Os03t0264400-01
Chr03	irgsp1_rep	CDS	8706264	8706415	.	-	2	Parent=Os03t0264400-01
Chr03	irgsp1_rep	CDS	8705526	8705641	.	-	0	Parent=Os03t0264400-01
Chr03	irgsp1_rep	CDS	8705185	8705431	.	-	1	Parent=Os03t0264400-01
Chr03	irgsp1_rep	CDS	8705021	8705077	.	-	0	Parent=Os03t0264400-01
Chr03	irgsp1_rep	CDS	8704788	8704940	.	-	0	Parent=Os03t0264400-01
Chr03	irgsp1_rep	CDS	8704602	8704682	.	-	0	Parent=Os03t0264400-01
Chr03	irgsp1_rep	CDS	8703932	8704018	.	-	0	Parent=Os03t0264400-01
Chr03	irgsp1_rep	CDS	8703205	8703531	.	-	0	Parent=Os03t0264400-01
Chr03	irgsp1_rep	three_prime_UTR	8702881	8703204	.	-	.	Parent=Os03t0264400-01
Chr03	irgsp1_rep	mRNA	8703034	8706666	.	-	.	ID=Os03t0264400-02;Name=Os03t0264400-02;Locus_id=Os03g0264400;CGSNL Gene Symbol=ASA2;CGSNL Gene Name=ANTHRANILATE SYNTHASE ALPHA-SUBUNIT 2;Oryzabase Gene Symbol Synonym(s)=OASA2 (%3DASA2)%2C OsASA2%2C OASA2%2C ASalpha2%2C OsASalpha2%2C OASA2;Oryzabase Gene Name Synonym(s)=anthranilate synthase alpha subunit 2%2C Anthranilate synthase alpha 2 subunit;Note=Similar to Anthranilate synthase component I family protein%2C expressed.;Transcript_evidence=AK073501 (DDBJ%2C Best hit);ORF_evidence=Q10NN5 (UniProt);GO=Biological Process: tryptophan biosynthetic process (GO:0000162),Biological Process: biosynthetic process (GO:0009058),Molecular Function: anthranilate synthase activity (GO:0004049),Molecular Function: oxo-acid-lyase activity (GO:0016833);InterPro=Anthranilate synthase component I%2C PabB-like (IPR005256),ADC synthase (IPR005801),Anthranilate synthase component I%2C N-terminal (IPR006805),Chorismate binding%2C C-terminal (IPR015890),Anthranilate synthase component I (IPR019999);NIAS_FLcDNA=J033046N16;Oryzabase=6743;Expression=AK073501;TENOR=Os03t0264400-02;KEGG=Os03t0264400-02 (EC:4.1.3.27)
Chr03	irgsp1_rep	CDS	8706519	8706666	.	-	0	Parent=Os03t0264400-02
Chr03	irgsp1_rep	CDS	8706264	8706415	.	-	2	Parent=Os03t0264400-02
Chr03	irgsp1_rep	CDS	8705526	8705641	.	-	0	Parent=Os03t0264400-02
Chr03	irgsp1_rep	CDS	8705185	8705431	.	-	1	Parent=Os03t0264400-02
Chr03	irgsp1_rep	CDS	8705021	8705077	.	-	0	Parent=Os03t0264400-02
Chr03	irgsp1_rep	CDS	8704788	8704940	.	-	0	Parent=Os03t0264400-02
Chr03	irgsp1_rep	CDS	8704602	8704682	.	-	0	Parent=Os03t0264400-02
Chr03	irgsp1_rep	CDS	8703932	8704018	.	-	0	Parent=Os03t0264400-02
Chr03	irgsp1_rep	CDS	8703205	8703531	.	-	0	Parent=Os03t0264400-02
Chr03	irgsp1_rep	three_prime_UTR	8703034	8703204	.	-	.	Parent=Os03t0264400-02
Chr03	irgsp1_rep	mRNA	8702305	8705020	.	-	.	ID=Os03t0264400-03;Name=Os03t0264400-03;Locus_id=Os03g0264400;CGSNL Gene Symbol=ASA2;CGSNL Gene Name=ANTHRANILATE SYNTHASE ALPHA-SUBUNIT 2;Oryzabase Gene Symbol Synonym(s)=OASA2 (%3DASA2)%2C OsASA2%2C OASA2%2C ASalpha2%2C OsASalpha2%2C OASA2;Oryzabase Gene Name Synonym(s)=anthranilate synthase alpha subunit 2%2C Anthranilate synthase alpha 2 subunit;Note=Similar to Anthranilate synthase component I family protein%2C expressed.;Transcript_evidence=AK069180 (DDBJ%2C Best hit);ORF_evidence=Q10NN8 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058);InterPro=ADC synthase (IPR005801),Chorismate binding%2C C-terminal (IPR015890),Anthranilate synthase component I (IPR019999);NIAS_FLcDNA=J023009M07;Oryzabase=6743;Expression=AK069180;TENOR=Os03t0264400-03;KEGG=Os03t0264400-03 (EC:4.1.3.27)
Chr03	irgsp1_rep	five_prime_UTR	8705001	8705020	.	-	.	Parent=Os03t0264400-03
Chr03	irgsp1_rep	CDS	8704716	8705000	.	-	0	Parent=Os03t0264400-03
Chr03	irgsp1_rep	three_prime_UTR	8702305	8704715	.	-	.	Parent=Os03t0264400-03
Chr03	irgsp1_rep	mRNA	8713068	8714646	.	-	.	ID=Os03t0264600-00;Name=Os03t0264600-00;Locus_id=Os03g0264600;Note=Similar to Nucleic acid binding protein.;Transcript_evidence=EU954611 (DDBJ);ORF_evidence=B6SPE6 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087);TENOR=Os03t0264600-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	8714525	8714646	.	-	.	Parent=Os03t0264600-00
Chr03	irgsp1_rep	CDS	8713124	8714524	.	-	0	Parent=Os03t0264600-00
Chr03	irgsp1_rep	three_prime_UTR	8713068	8713123	.	-	.	Parent=Os03t0264600-00
Chr03	irgsp1_rep	mRNA	8718148	8719815	.	-	.	ID=Os03t0264700-01;Name=Os03t0264700-01;Locus_id=Os03g0264700;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK111791 (DDBJ%2C Best hit);ORF_evidence=A2XEU4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Quinoprotein amine dehydrogenase%2C beta chain-like (IPR011044),WD40/YVTN repeat-like-containing domain (IPR015943);NIAS_FLcDNA=J023099E06;Expression=AK111791;TENOR=Os03t0264700-01;KEGG=Os03t0264700-01
Chr03	irgsp1_rep	five_prime_UTR	8719792	8719815	.	-	.	Parent=Os03t0264700-01
Chr03	irgsp1_rep	CDS	8718346	8719791	.	-	0	Parent=Os03t0264700-01
Chr03	irgsp1_rep	three_prime_UTR	8718148	8718345	.	-	.	Parent=Os03t0264700-01
Chr03	irgsp1_rep	mRNA	8720259	8728315	.	-	.	ID=Os03t0264800-00;Name=Os03t0264800-00;Locus_id=Os03g0264800;Note=Similar to ATPase%2C AAA family protein%2C expressed.;Transcript_evidence=AK374520 (DDBJ);ORF_evidence=Q10NN1 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959);TENOR=Os03t0264800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	8727835	8728315	.	-	0	Parent=Os03t0264800-00
Chr03	irgsp1_rep	CDS	8727409	8727741	.	-	2	Parent=Os03t0264800-00
Chr03	irgsp1_rep	CDS	8727229	8727290	.	-	2	Parent=Os03t0264800-00
Chr03	irgsp1_rep	CDS	8726869	8727006	.	-	0	Parent=Os03t0264800-00
Chr03	irgsp1_rep	CDS	8726452	8726715	.	-	0	Parent=Os03t0264800-00
Chr03	irgsp1_rep	CDS	8726254	8726340	.	-	0	Parent=Os03t0264800-00
Chr03	irgsp1_rep	CDS	8725735	8725836	.	-	0	Parent=Os03t0264800-00
Chr03	irgsp1_rep	CDS	8725596	8725661	.	-	0	Parent=Os03t0264800-00
Chr03	irgsp1_rep	CDS	8725317	8725424	.	-	0	Parent=Os03t0264800-00
Chr03	irgsp1_rep	CDS	8725178	8725239	.	-	0	Parent=Os03t0264800-00
Chr03	irgsp1_rep	CDS	8725044	8725088	.	-	1	Parent=Os03t0264800-00
Chr03	irgsp1_rep	CDS	8724858	8724931	.	-	1	Parent=Os03t0264800-00
Chr03	irgsp1_rep	CDS	8723907	8723974	.	-	2	Parent=Os03t0264800-00
Chr03	irgsp1_rep	CDS	8723760	8723828	.	-	0	Parent=Os03t0264800-00
Chr03	irgsp1_rep	CDS	8723458	8723555	.	-	0	Parent=Os03t0264800-00
Chr03	irgsp1_rep	CDS	8723300	8723381	.	-	1	Parent=Os03t0264800-00
Chr03	irgsp1_rep	CDS	8723113	8723191	.	-	0	Parent=Os03t0264800-00
Chr03	irgsp1_rep	CDS	8722950	8723037	.	-	2	Parent=Os03t0264800-00
Chr03	irgsp1_rep	CDS	8722728	8722881	.	-	1	Parent=Os03t0264800-00
Chr03	irgsp1_rep	CDS	8722166	8722357	.	-	0	Parent=Os03t0264800-00
Chr03	irgsp1_rep	CDS	8722030	8722089	.	-	0	Parent=Os03t0264800-00
Chr03	irgsp1_rep	CDS	8721108	8721349	.	-	0	Parent=Os03t0264800-00
Chr03	irgsp1_rep	CDS	8720900	8721005	.	-	1	Parent=Os03t0264800-00
Chr03	irgsp1_rep	CDS	8720361	8720414	.	-	0	Parent=Os03t0264800-00
Chr03	irgsp1_rep	three_prime_UTR	8720259	8720360	.	-	.	Parent=Os03t0264800-00
Chr03	irgsp1_rep	mRNA	8733820	8735710	.	+	.	ID=Os03t0264950-00;Name=Os03t0264950-00;Locus_id=Os03g0264950;Note=Similar to HAT family dimerisation domain containing protein.;Transcript_evidence=BT033929 (DDBJ);ORF_evidence=Q53RM1 (UniProt);GO=Molecular Function: DNA binding (GO:0003677);InterPro=Zinc finger%2C BED-type predicted (IPR003656);TENOR=Os03t0264950-00
Chr03	irgsp1_rep	CDS	8733820	8734182	.	+	0	Parent=Os03t0264950-00
Chr03	irgsp1_rep	three_prime_UTR	8734183	8735710	.	+	.	Parent=Os03t0264950-00
Chr03	irgsp1_rep	mRNA	8736592	8740712	.	-	.	ID=Os03t0265001-01;Name=Os03t0265001-01;Locus_id=Os03g0265001;Note=Hypothetical gene.;Transcript_evidence=AK288957 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090084B06;TENOR=Os03t0265001-01;KEGG=Os03t0265001-01
Chr03	irgsp1_rep	five_prime_UTR	8737755	8740712	.	-	.	Parent=Os03t0265001-01
Chr03	irgsp1_rep	CDS	8737293	8737754	.	-	0	Parent=Os03t0265001-01
Chr03	irgsp1_rep	three_prime_UTR	8736592	8737292	.	-	.	Parent=Os03t0265001-01
Chr03	irgsp1_rep	mRNA	8737129	8741179	.	+	.	ID=Os03t0265100-01;Name=Os03t0265100-01;Locus_id=Os03g0265100;RAP-DB Gene Symbol Synonym(s)=PLS2%2C OsSQD2.3;RAP-DB Gene Name Synonym(s)=Premature Leaf Senescence 2%2C sulfoquinovosyl transferase-like protein 2.3;CGSNL Gene Symbol=PLS2;CGSNL Gene Name=PREMATURE LEAF SENESCENT 2;Oryzabase Gene Symbol Synonym(s)=SQD2.3%2C OsSQD2.3;Oryzabase Gene Name Synonym(s)=sulfoquinovosyl transferase-like protein 2.3%2C Sulfoquinovosyldiacylglycerol synthase 2.3%2C Premature Leaf Senescent 2%2C premature leaf senescence 2;Note=Glycosyltransferase%2C Leaf senescence;Transcript_evidence=AK105267;ORF_evidence=Q84QB1;InterPro=Glycosyltransferase subfamily 4-like%2C N-terminal domain (IPR028098),Glycosyl transferase%2C family 1 (IPR001296);NIAS_FLcDNA=001-115-D07;Manual Curation=May 22%2C 2018;Literature_PMID=29755498,28680100;Oryzabase=21766;Expression=AK105267;TENOR=Os03t0265100-01;KEGG=Os03t0265100-01;Subcellular location=endoplasmic reticulum (GO:0005783)
Chr03	irgsp1_rep	five_prime_UTR	8737129	8737668	.	+	.	Parent=Os03t0265100-01
Chr03	irgsp1_rep	CDS	8737669	8737784	.	+	0	Parent=Os03t0265100-01
Chr03	irgsp1_rep	CDS	8737922	8737988	.	+	1	Parent=Os03t0265100-01
Chr03	irgsp1_rep	CDS	8738082	8738152	.	+	0	Parent=Os03t0265100-01
Chr03	irgsp1_rep	CDS	8738521	8738638	.	+	1	Parent=Os03t0265100-01
Chr03	irgsp1_rep	CDS	8738712	8738785	.	+	0	Parent=Os03t0265100-01
Chr03	irgsp1_rep	CDS	8739170	8739225	.	+	1	Parent=Os03t0265100-01
Chr03	irgsp1_rep	CDS	8739340	8739423	.	+	2	Parent=Os03t0265100-01
Chr03	irgsp1_rep	CDS	8739503	8739590	.	+	2	Parent=Os03t0265100-01
Chr03	irgsp1_rep	CDS	8739678	8739755	.	+	1	Parent=Os03t0265100-01
Chr03	irgsp1_rep	CDS	8740227	8740283	.	+	1	Parent=Os03t0265100-01
Chr03	irgsp1_rep	CDS	8740498	8740936	.	+	1	Parent=Os03t0265100-01
Chr03	irgsp1_rep	three_prime_UTR	8740937	8741179	.	+	.	Parent=Os03t0265100-01
Chr03	irgsp1_rep	mRNA	8741914	8744127	.	-	.	ID=Os03t0265200-01;Name=Os03t0265200-01;Locus_id=Os03g0265200;Note=Similar to Josephin-like protein.;Transcript_evidence=AK100867 (DDBJ%2C Best hit);ORF_evidence=B6T783 (UniProt);GO=Molecular Function: omega peptidase activity (GO:0008242);InterPro=Machado-Joseph disease protein MJD (IPR006155);NIAS_FLcDNA=J023124E13;Expression=AK100867;TENOR=Os03t0265200-01;KEGG=Os03t0265200-01
Chr03	irgsp1_rep	five_prime_UTR	8743978	8744127	.	-	.	Parent=Os03t0265200-01
Chr03	irgsp1_rep	CDS	8743825	8743977	.	-	0	Parent=Os03t0265200-01
Chr03	irgsp1_rep	CDS	8742599	8743054	.	-	0	Parent=Os03t0265200-01
Chr03	irgsp1_rep	three_prime_UTR	8741914	8742598	.	-	.	Parent=Os03t0265200-01
Chr03	irgsp1_rep	mRNA	8749943	8752907	.	+	.	ID=Os03t0265300-01;Name=Os03t0265300-01;Locus_id=Os03g0265300;Note=Mitochondrial substrate carrier family protein.;Transcript_evidence=AK101498 (DDBJ%2C Best hit);ORF_evidence=NP_001152063.1 (RefSeq);InterPro=Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J033043H11;Expression=AK101498;TENOR=Os03t0265300-01;KEGG=Os03t0265300-01
Chr03	irgsp1_rep	five_prime_UTR	8749943	8750010	.	+	.	Parent=Os03t0265300-01
Chr03	irgsp1_rep	CDS	8750011	8750091	.	+	0	Parent=Os03t0265300-01
Chr03	irgsp1_rep	CDS	8750187	8750264	.	+	0	Parent=Os03t0265300-01
Chr03	irgsp1_rep	CDS	8750388	8750462	.	+	0	Parent=Os03t0265300-01
Chr03	irgsp1_rep	CDS	8750558	8750688	.	+	0	Parent=Os03t0265300-01
Chr03	irgsp1_rep	CDS	8750840	8750894	.	+	1	Parent=Os03t0265300-01
Chr03	irgsp1_rep	CDS	8750999	8751109	.	+	0	Parent=Os03t0265300-01
Chr03	irgsp1_rep	CDS	8751430	8751498	.	+	0	Parent=Os03t0265300-01
Chr03	irgsp1_rep	CDS	8751579	8751686	.	+	0	Parent=Os03t0265300-01
Chr03	irgsp1_rep	CDS	8751998	8752066	.	+	0	Parent=Os03t0265300-01
Chr03	irgsp1_rep	CDS	8752158	8752212	.	+	0	Parent=Os03t0265300-01
Chr03	irgsp1_rep	CDS	8752391	8752593	.	+	2	Parent=Os03t0265300-01
Chr03	irgsp1_rep	three_prime_UTR	8752594	8752907	.	+	.	Parent=Os03t0265300-01
Chr03	irgsp1_rep	mRNA	8753551	8756010	.	+	.	ID=Os03t0265400-01;Name=Os03t0265400-01;Locus_id=Os03g0265400;Note=Similar to 50S ribosomal protein L4%2C chloroplast precursor (R-protein L4).;Transcript_evidence=AK120527 (DDBJ%2C Best hit);ORF_evidence=NP_001149608.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L4/L1e (IPR002136),Ribosomal protein L4/L1e%2C bacterial-type (IPR013005),Ribosomal protein L4 domain (IPR023574);NIAS_FLcDNA=J013127C20;Expression=AK120527;TENOR=Os03t0265400-01;KEGG=Os03t0265400-01
Chr03	irgsp1_rep	five_prime_UTR	8753551	8753663	.	+	.	Parent=Os03t0265400-01
Chr03	irgsp1_rep	CDS	8753664	8754597	.	+	0	Parent=Os03t0265400-01
Chr03	irgsp1_rep	CDS	8755758	8755795	.	+	2	Parent=Os03t0265400-01
Chr03	irgsp1_rep	three_prime_UTR	8755796	8756010	.	+	.	Parent=Os03t0265400-01
Chr03	irgsp1_rep	mRNA	8753600	8755986	.	+	.	ID=Os03t0265400-02;Name=Os03t0265400-02;Locus_id=Os03g0265400;Note=Similar to 50S ribosomal protein L4%2C chloroplast precursor (R-protein L4).;Transcript_evidence=AK104116 (DDBJ%2C Best hit),AK061468 (DDBJ%2C Best hit),AK104424 (DDBJ%2C Best hit);ORF_evidence=NP_001149608.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L4/L1e (IPR002136),Ribosomal protein L4/L1e%2C bacterial-type (IPR013005),Ribosomal protein L4 domain (IPR023574);NIAS_FLcDNA=006-203-A01,006-308-D01,006-205-F06;TENOR=Os03t0265400-02
Chr03	irgsp1_rep	five_prime_UTR	8753600	8753663	.	+	.	Parent=Os03t0265400-02
Chr03	irgsp1_rep	CDS	8753664	8754597	.	+	0	Parent=Os03t0265400-02
Chr03	irgsp1_rep	CDS	8755758	8755795	.	+	2	Parent=Os03t0265400-02
Chr03	irgsp1_rep	three_prime_UTR	8755796	8755986	.	+	.	Parent=Os03t0265400-02
Chr03	irgsp1_rep	mRNA	8761804	8766894	.	+	.	ID=Os03t0265500-01;Name=Os03t0265500-01;Locus_id=Os03g0265500;RAP-DB Gene Symbol Synonym(s)=OsCOI2;RAP-DB Gene Name Synonym(s)=coronatine insensitive 2;Oryzabase Gene Symbol Synonym(s)=OsCOI2;Oryzabase Gene Name Synonym(s)=coronatine insensitive 2;Note=COI1 homolog%2C Jasmonate signaling;Transcript_evidence=AK100694;ORF_evidence=Q84QA7;NIAS_FLcDNA=J023114I18;Manual Curation=June 12%2C 2015;Literature_PMID=23320078;Oryzabase=11725;Expression=AK100694;TENOR=Os03t0265500-01;KEGG=Os03t0265500-01
Chr03	irgsp1_rep	five_prime_UTR	8761804	8761907	.	+	.	Parent=Os03t0265500-01
Chr03	irgsp1_rep	five_prime_UTR	8763585	8764183	.	+	.	Parent=Os03t0265500-01
Chr03	irgsp1_rep	CDS	8764184	8764680	.	+	0	Parent=Os03t0265500-01
Chr03	irgsp1_rep	CDS	8765060	8765546	.	+	1	Parent=Os03t0265500-01
Chr03	irgsp1_rep	CDS	8765658	8766443	.	+	0	Parent=Os03t0265500-01
Chr03	irgsp1_rep	three_prime_UTR	8766444	8766894	.	+	.	Parent=Os03t0265500-01
Chr03	irgsp1_rep	mRNA	8764065	8766853	.	+	.	ID=Os03t0265500-02;Name=Os03t0265500-02;Locus_id=Os03g0265500;Oryzabase Gene Symbol Synonym(s)=OsCOI2;Oryzabase Gene Name Synonym(s)=coronatine insensitive 2;Note=Similar to Coronatine-insensitive 1.;Transcript_evidence=AK066392 (DDBJ%2C Best hit);ORF_evidence=E2I9G4 (UniProt);NIAS_FLcDNA=J013065E20;Oryzabase=11725;Expression=AK066392;TENOR=Os03t0265500-02;KEGG=Os03t0265500-02
Chr03	irgsp1_rep	five_prime_UTR	8764065	8764183	.	+	.	Parent=Os03t0265500-02
Chr03	irgsp1_rep	CDS	8764184	8764680	.	+	0	Parent=Os03t0265500-02
Chr03	irgsp1_rep	CDS	8765060	8765546	.	+	1	Parent=Os03t0265500-02
Chr03	irgsp1_rep	CDS	8765658	8766443	.	+	0	Parent=Os03t0265500-02
Chr03	irgsp1_rep	three_prime_UTR	8766444	8766853	.	+	.	Parent=Os03t0265500-02
Chr03	irgsp1_rep	mRNA	8767643	8770548	.	-	.	ID=Os03t0265600-01;Name=Os03t0265600-01;Locus_id=Os03g0265600;Note=Similar to Transformer-2-like protein.;Transcript_evidence=AK065578 (DDBJ%2C Best hit);ORF_evidence=Q10NM2 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013026M08;Expression=AK065578;TENOR=Os03t0265600-01;KEGG=Os03t0265600-01
Chr03	irgsp1_rep	five_prime_UTR	8770458	8770548	.	-	.	Parent=Os03t0265600-01
Chr03	irgsp1_rep	CDS	8769578	8769600	.	-	0	Parent=Os03t0265600-01
Chr03	irgsp1_rep	CDS	8769430	8769498	.	-	1	Parent=Os03t0265600-01
Chr03	irgsp1_rep	CDS	8769203	8769314	.	-	1	Parent=Os03t0265600-01
Chr03	irgsp1_rep	CDS	8768982	8769131	.	-	0	Parent=Os03t0265600-01
Chr03	irgsp1_rep	CDS	8768851	8768874	.	-	0	Parent=Os03t0265600-01
Chr03	irgsp1_rep	three_prime_UTR	8768777	8768850	.	-	.	Parent=Os03t0265600-01
Chr03	irgsp1_rep	three_prime_UTR	8768596	8768659	.	-	.	Parent=Os03t0265600-01
Chr03	irgsp1_rep	three_prime_UTR	8767643	8768472	.	-	.	Parent=Os03t0265600-01
Chr03	irgsp1_rep	mRNA	8775613	8775945	.	+	.	ID=Os03t0265666-00;Name=Os03t0265666-00;Locus_id=Os03g0265666;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B8AKQ9 (UniProt);TENOR=Os03t0265666-00;KEGG=Os03t0265666-00
Chr03	irgsp1_rep	CDS	8775613	8775945	.	+	0	Parent=Os03t0265666-00
Chr03	irgsp1_rep	mRNA	8776183	8786052	.	+	.	ID=Os03t0265700-01;Name=Os03t0265700-01;Locus_id=Os03g0265700;Note=Similar to SH3 domain containing protein%2C expressed.;Transcript_evidence=AK068453 (DDBJ%2C Best hit);ORF_evidence=Q10NL9 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Src homology-3 domain (IPR001452),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013151K19;TENOR=Os03t0265700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	8776183	8776213	.	+	.	Parent=Os03t0265700-01
Chr03	irgsp1_rep	CDS	8776214	8776216	.	+	0	Parent=Os03t0265700-01
Chr03	irgsp1_rep	CDS	8776557	8776785	.	+	0	Parent=Os03t0265700-01
Chr03	irgsp1_rep	CDS	8777206	8777312	.	+	2	Parent=Os03t0265700-01
Chr03	irgsp1_rep	CDS	8777452	8777514	.	+	0	Parent=Os03t0265700-01
Chr03	irgsp1_rep	CDS	8777775	8777875	.	+	0	Parent=Os03t0265700-01
Chr03	irgsp1_rep	CDS	8778888	8778982	.	+	1	Parent=Os03t0265700-01
Chr03	irgsp1_rep	CDS	8779222	8779242	.	+	2	Parent=Os03t0265700-01
Chr03	irgsp1_rep	CDS	8779879	8779974	.	+	2	Parent=Os03t0265700-01
Chr03	irgsp1_rep	CDS	8780080	8780200	.	+	2	Parent=Os03t0265700-01
Chr03	irgsp1_rep	CDS	8780307	8780462	.	+	1	Parent=Os03t0265700-01
Chr03	irgsp1_rep	CDS	8780571	8780761	.	+	1	Parent=Os03t0265700-01
Chr03	irgsp1_rep	CDS	8781099	8781370	.	+	2	Parent=Os03t0265700-01
Chr03	irgsp1_rep	CDS	8781745	8781846	.	+	0	Parent=Os03t0265700-01
Chr03	irgsp1_rep	CDS	8782024	8782200	.	+	0	Parent=Os03t0265700-01
Chr03	irgsp1_rep	CDS	8782289	8782477	.	+	0	Parent=Os03t0265700-01
Chr03	irgsp1_rep	CDS	8782559	8782800	.	+	0	Parent=Os03t0265700-01
Chr03	irgsp1_rep	CDS	8782875	8783021	.	+	1	Parent=Os03t0265700-01
Chr03	irgsp1_rep	CDS	8783418	8783643	.	+	1	Parent=Os03t0265700-01
Chr03	irgsp1_rep	CDS	8783785	8783914	.	+	0	Parent=Os03t0265700-01
Chr03	irgsp1_rep	CDS	8784268	8784413	.	+	2	Parent=Os03t0265700-01
Chr03	irgsp1_rep	CDS	8784721	8784900	.	+	0	Parent=Os03t0265700-01
Chr03	irgsp1_rep	CDS	8785227	8785286	.	+	0	Parent=Os03t0265700-01
Chr03	irgsp1_rep	CDS	8785376	8785447	.	+	0	Parent=Os03t0265700-01
Chr03	irgsp1_rep	three_prime_UTR	8785448	8786052	.	+	.	Parent=Os03t0265700-01
Chr03	irgsp1_rep	mRNA	8781253	8785791	.	+	.	ID=Os03t0265700-02;Name=Os03t0265700-02;Locus_id=Os03g0265700;Note=Similar to SH3 domain containing protein%2C expressed.;Transcript_evidence=AK070221 (DDBJ%2C Best hit);ORF_evidence=Q10NL9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Src homology-3 domain (IPR001452);NIAS_FLcDNA=J023043H04;Expression=AK070221;TENOR=Os03t0265700-02;KEGG=Os03t0265700-02
Chr03	irgsp1_rep	five_prime_UTR	8781253	8781253	.	+	.	Parent=Os03t0265700-02
Chr03	irgsp1_rep	CDS	8781254	8781370	.	+	0	Parent=Os03t0265700-02
Chr03	irgsp1_rep	CDS	8781745	8781846	.	+	0	Parent=Os03t0265700-02
Chr03	irgsp1_rep	CDS	8782024	8782200	.	+	0	Parent=Os03t0265700-02
Chr03	irgsp1_rep	CDS	8782289	8782477	.	+	0	Parent=Os03t0265700-02
Chr03	irgsp1_rep	CDS	8782559	8782800	.	+	0	Parent=Os03t0265700-02
Chr03	irgsp1_rep	CDS	8782875	8783021	.	+	1	Parent=Os03t0265700-02
Chr03	irgsp1_rep	CDS	8783418	8783643	.	+	1	Parent=Os03t0265700-02
Chr03	irgsp1_rep	CDS	8783785	8783914	.	+	0	Parent=Os03t0265700-02
Chr03	irgsp1_rep	CDS	8784268	8784413	.	+	2	Parent=Os03t0265700-02
Chr03	irgsp1_rep	CDS	8784721	8784900	.	+	0	Parent=Os03t0265700-02
Chr03	irgsp1_rep	CDS	8785227	8785286	.	+	0	Parent=Os03t0265700-02
Chr03	irgsp1_rep	CDS	8785376	8785447	.	+	0	Parent=Os03t0265700-02
Chr03	irgsp1_rep	three_prime_UTR	8785448	8785791	.	+	.	Parent=Os03t0265700-02
Chr03	irgsp1_rep	mRNA	8788679	8789277	.	+	.	ID=Os03t0265800-01;Name=Os03t0265800-01;Locus_id=Os03g0265800;Note=Protein of unknown function DUF2253%2C membrane domain containing protein.;Transcript_evidence=AK058803 (DDBJ%2C Best hit);ORF_evidence=B6TSG7 (UniProt);InterPro=Protein of unknown function DUF962 (IPR009305);NIAS_FLcDNA=001-003-B05;Expression=AK058803;TENOR=Os03t0265800-01;KEGG=Os03t0265800-01
Chr03	irgsp1_rep	CDS	8788679	8789029	.	+	0	Parent=Os03t0265800-01
Chr03	irgsp1_rep	three_prime_UTR	8789030	8789277	.	+	.	Parent=Os03t0265800-01
Chr03	irgsp1_rep	mRNA	8789242	8790378	.	-	.	ID=Os03t0265900-01;Name=Os03t0265900-01;Locus_id=Os03g0265900;Note=Conserved hypothetical protein.;Transcript_evidence=AK120374 (DDBJ%2C Best hit),AK099963 (DDBJ%2C Best hit);ORF_evidence=B8AKM7 (UniProt);NIAS_FLcDNA=J013071C06,J013126L15;TENOR=Os03t0265900-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	8790299	8790378	.	-	.	Parent=Os03t0265900-01
Chr03	irgsp1_rep	CDS	8790086	8790298	.	-	0	Parent=Os03t0265900-01
Chr03	irgsp1_rep	CDS	8789893	8789985	.	-	0	Parent=Os03t0265900-01
Chr03	irgsp1_rep	CDS	8789645	8789785	.	-	0	Parent=Os03t0265900-01
Chr03	irgsp1_rep	CDS	8789477	8789518	.	-	0	Parent=Os03t0265900-01
Chr03	irgsp1_rep	three_prime_UTR	8789242	8789476	.	-	.	Parent=Os03t0265900-01
Chr03	irgsp1_rep	mRNA	8790747	8795463	.	+	.	ID=Os03t0266000-01;Name=Os03t0266000-01;Locus_id=Os03g0266000;Note=Ovarian tumour%2C otubain domain containing protein.;Transcript_evidence=AK068775 (DDBJ%2C Best hit),AK104949 (DDBJ%2C Best hit);ORF_evidence=Q10NL2 (UniProt);InterPro=Ovarian tumour%2C otubain (IPR003323);NIAS_FLcDNA=J013160P06,001-109-H02;TENOR=Os03t0266000-01
Chr03	irgsp1_rep	five_prime_UTR	8790747	8790814	.	+	.	Parent=Os03t0266000-01
Chr03	irgsp1_rep	CDS	8790815	8790842	.	+	0	Parent=Os03t0266000-01
Chr03	irgsp1_rep	CDS	8790935	8791073	.	+	2	Parent=Os03t0266000-01
Chr03	irgsp1_rep	CDS	8791160	8791250	.	+	1	Parent=Os03t0266000-01
Chr03	irgsp1_rep	CDS	8791328	8791391	.	+	0	Parent=Os03t0266000-01
Chr03	irgsp1_rep	CDS	8792729	8792834	.	+	2	Parent=Os03t0266000-01
Chr03	irgsp1_rep	CDS	8792910	8792964	.	+	1	Parent=Os03t0266000-01
Chr03	irgsp1_rep	CDS	8794269	8794322	.	+	0	Parent=Os03t0266000-01
Chr03	irgsp1_rep	CDS	8795115	8795252	.	+	0	Parent=Os03t0266000-01
Chr03	irgsp1_rep	three_prime_UTR	8795253	8795463	.	+	.	Parent=Os03t0266000-01
Chr03	irgsp1_rep	mRNA	8797898	8799782	.	+	.	ID=Os03t0266100-01;Name=Os03t0266100-01;Locus_id=Os03g0266100;Note=Zinc finger%2C LIM-type domain containing protein.;Transcript_evidence=AK058507 (DDBJ%2C Best hit);ORF_evidence=NP_001147673.1 (RefSeq);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C LIM-type (IPR001781);NIAS_FLcDNA=001-016-G03;Expression=AK058507;TENOR=Os03t0266100-01;KEGG=Os03t0266100-01
Chr03	irgsp1_rep	five_prime_UTR	8797898	8798073	.	+	.	Parent=Os03t0266100-01
Chr03	irgsp1_rep	CDS	8798074	8798205	.	+	0	Parent=Os03t0266100-01
Chr03	irgsp1_rep	CDS	8798626	8798725	.	+	0	Parent=Os03t0266100-01
Chr03	irgsp1_rep	CDS	8798841	8798878	.	+	2	Parent=Os03t0266100-01
Chr03	irgsp1_rep	CDS	8798994	8799083	.	+	0	Parent=Os03t0266100-01
Chr03	irgsp1_rep	CDS	8799357	8799587	.	+	0	Parent=Os03t0266100-01
Chr03	irgsp1_rep	three_prime_UTR	8799588	8799782	.	+	.	Parent=Os03t0266100-01
Chr03	irgsp1_rep	mRNA	8800461	8803575	.	-	.	ID=Os03t0266200-01;Name=Os03t0266200-01;Locus_id=Os03g0266200;Oryzabase Gene Symbol Synonym(s)=OsEno3%2C Eno3;Oryzabase Gene Name Synonym(s)=enolase 3;Note=Similar to Enolase (EC 4.2.1.11) (Fragment).;Transcript_evidence=AK058348 (DDBJ%2C Best hit);ORF_evidence=B9F777 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Cellular Component: phosphopyruvate hydratase complex (GO:0000015),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: phosphopyruvate hydratase activity (GO:0004634);InterPro=Enolase (IPR000941),Enolase%2C conserved site (IPR020809),Enolase%2C C-terminal (IPR020810);NIAS_FLcDNA=001-014-E04;Oryzabase=21727;Expression=AK058348;TENOR=Os03t0266200-01;KEGG=Os03t0266200-01 (EC:4.2.1.11)
Chr03	irgsp1_rep	five_prime_UTR	8803574	8803575	.	-	.	Parent=Os03t0266200-01
Chr03	irgsp1_rep	CDS	8803535	8803573	.	-	0	Parent=Os03t0266200-01
Chr03	irgsp1_rep	CDS	8803147	8803223	.	-	0	Parent=Os03t0266200-01
Chr03	irgsp1_rep	CDS	8802938	8803041	.	-	1	Parent=Os03t0266200-01
Chr03	irgsp1_rep	CDS	8802162	8802260	.	-	2	Parent=Os03t0266200-01
Chr03	irgsp1_rep	CDS	8801986	8802071	.	-	2	Parent=Os03t0266200-01
Chr03	irgsp1_rep	CDS	8801831	8801917	.	-	0	Parent=Os03t0266200-01
Chr03	irgsp1_rep	CDS	8801056	8801253	.	-	0	Parent=Os03t0266200-01
Chr03	irgsp1_rep	CDS	8800797	8800877	.	-	0	Parent=Os03t0266200-01
Chr03	irgsp1_rep	three_prime_UTR	8800461	8800796	.	-	.	Parent=Os03t0266200-01
Chr03	irgsp1_rep	mRNA	8805567	8806556	.	+	.	ID=Os03t0266300-01;Name=Os03t0266300-01;Locus_id=Os03g0266300;CGSNL Gene Symbol=HSP17.9A;CGSNL Gene Name=17.9 KDA CLASS I HEAT SHOCK PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=Oshsp17.9A%2C OsHsp17.9A%2C OsHSP17.9A-CI%2C Oshsp17.9;Oryzabase Gene Name Synonym(s)=17.9 kDa class I heat shock protein%2C 17.9 kDa heat shock protein 1%2C 17.9-kD class I heat shock protein;Note=Class I low-molecular-weight heat shock protein 17.9.;Transcript_evidence=AK104129 (DDBJ%2C Best hit);ORF_evidence=Q84Q77 (UniProt);InterPro=Heat shock protein Hsp20 (IPR002068),HSP20-like chaperone (IPR008978);NIAS_FLcDNA=006-203-F10;Oryzabase=6167;Expression=AK104129;TENOR=Os03t0266300-01;KEGG=Os03t0266300-01
Chr03	irgsp1_rep	five_prime_UTR	8805567	8805783	.	+	.	Parent=Os03t0266300-01
Chr03	irgsp1_rep	CDS	8805784	8806269	.	+	0	Parent=Os03t0266300-01
Chr03	irgsp1_rep	three_prime_UTR	8806270	8806556	.	+	.	Parent=Os03t0266300-01
Chr03	irgsp1_rep	mRNA	8805676	8806526	.	+	.	ID=Os03t0266300-03;Name=Os03t0266300-03;Locus_id=Os03g0266300;CGSNL Gene Symbol=HSP17.9A;CGSNL Gene Name=17.9 KDA CLASS I HEAT SHOCK PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=Oshsp17.9A%2C OsHsp17.9A%2C OsHSP17.9A-CI%2C Oshsp17.9;Oryzabase Gene Name Synonym(s)=17.9 kDa class I heat shock protein%2C 17.9 kDa heat shock protein 1%2C 17.9-kD class I heat shock protein;Note=Class I low-molecular-weight heat shock protein 17.9.;Transcript_evidence=AK119616 (DDBJ%2C Best hit),AK073671 (DDBJ%2C Best hit),AK119239 (DDBJ%2C Best hit),AK119664 (DDBJ%2C Best hit),AK119675 (DDBJ%2C Best hit);ORF_evidence=Q84Q77 (UniProt);InterPro=Heat shock protein Hsp20 (IPR002068),HSP20-like chaperone (IPR008978);NIAS_FLcDNA=002-117-G08,J033051H23,001-120-A01,002-144-D02,002-156-G10;Oryzabase=6167;TENOR=Os03t0266300-03
Chr03	irgsp1_rep	five_prime_UTR	8805676	8805783	.	+	.	Parent=Os03t0266300-03
Chr03	irgsp1_rep	CDS	8805784	8806269	.	+	0	Parent=Os03t0266300-03
Chr03	irgsp1_rep	three_prime_UTR	8806270	8806526	.	+	.	Parent=Os03t0266300-03
Chr03	irgsp1_rep	mRNA	8819434	8824333	.	+	.	ID=Os03t0266700-01;Name=Os03t0266700-01;Locus_id=Os03g0266700;Note=Src homology-3 domain containing protein.;Transcript_evidence=AK072831 (DDBJ%2C Best hit);ORF_evidence=NP_001149747.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Src homology-3 domain (IPR001452);NIAS_FLcDNA=J023138M07;Expression=AK072831;TENOR=Os03t0266700-01;KEGG=Os03t0266700-01
Chr03	irgsp1_rep	five_prime_UTR	8819434	8819781	.	+	.	Parent=Os03t0266700-01
Chr03	irgsp1_rep	CDS	8819782	8819841	.	+	0	Parent=Os03t0266700-01
Chr03	irgsp1_rep	CDS	8820217	8820333	.	+	0	Parent=Os03t0266700-01
Chr03	irgsp1_rep	CDS	8820424	8820493	.	+	0	Parent=Os03t0266700-01
Chr03	irgsp1_rep	CDS	8820580	8820728	.	+	2	Parent=Os03t0266700-01
Chr03	irgsp1_rep	CDS	8821412	8821513	.	+	0	Parent=Os03t0266700-01
Chr03	irgsp1_rep	CDS	8821584	8821784	.	+	0	Parent=Os03t0266700-01
Chr03	irgsp1_rep	CDS	8822481	8822543	.	+	0	Parent=Os03t0266700-01
Chr03	irgsp1_rep	CDS	8822683	8822901	.	+	0	Parent=Os03t0266700-01
Chr03	irgsp1_rep	CDS	8823573	8823647	.	+	0	Parent=Os03t0266700-01
Chr03	irgsp1_rep	CDS	8823895	8824023	.	+	0	Parent=Os03t0266700-01
Chr03	irgsp1_rep	three_prime_UTR	8824024	8824333	.	+	.	Parent=Os03t0266700-01
Chr03	irgsp1_rep	mRNA	8827752	8833517	.	+	.	ID=Os03t0266800-01;Name=Os03t0266800-01;Locus_id=Os03g0266800;Oryzabase Gene Symbol Synonym(s)=OsBAK1-10;Oryzabase Gene Name Synonym(s)=bri1-associated receptor kinase 1 (BAK1) homologue 10;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK100780 (DDBJ%2C Best hit);ORF_evidence=B6SW87 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023120G02;Oryzabase=19185;Expression=AK100780;TENOR=Os03t0266800-01;KEGG=Os03t0266800-01
Chr03	irgsp1_rep	five_prime_UTR	8827752	8827988	.	+	.	Parent=Os03t0266800-01
Chr03	irgsp1_rep	five_prime_UTR	8828681	8828822	.	+	.	Parent=Os03t0266800-01
Chr03	irgsp1_rep	CDS	8828823	8828916	.	+	0	Parent=Os03t0266800-01
Chr03	irgsp1_rep	CDS	8829010	8829145	.	+	2	Parent=Os03t0266800-01
Chr03	irgsp1_rep	CDS	8829327	8829398	.	+	1	Parent=Os03t0266800-01
Chr03	irgsp1_rep	CDS	8829475	8829546	.	+	1	Parent=Os03t0266800-01
Chr03	irgsp1_rep	CDS	8829690	8829761	.	+	1	Parent=Os03t0266800-01
Chr03	irgsp1_rep	CDS	8830025	8830096	.	+	1	Parent=Os03t0266800-01
Chr03	irgsp1_rep	CDS	8830182	8830253	.	+	1	Parent=Os03t0266800-01
Chr03	irgsp1_rep	CDS	8830422	8830519	.	+	1	Parent=Os03t0266800-01
Chr03	irgsp1_rep	CDS	8830784	8830954	.	+	2	Parent=Os03t0266800-01
Chr03	irgsp1_rep	CDS	8831033	8831365	.	+	2	Parent=Os03t0266800-01
Chr03	irgsp1_rep	CDS	8832386	8832631	.	+	2	Parent=Os03t0266800-01
Chr03	irgsp1_rep	CDS	8832776	8832909	.	+	2	Parent=Os03t0266800-01
Chr03	irgsp1_rep	CDS	8833024	8833236	.	+	0	Parent=Os03t0266800-01
Chr03	irgsp1_rep	three_prime_UTR	8833237	8833517	.	+	.	Parent=Os03t0266800-01
Chr03	irgsp1_rep	mRNA	8830812	8833478	.	+	.	ID=Os03t0266800-02;Name=Os03t0266800-02;Locus_id=Os03g0266800;Oryzabase Gene Symbol Synonym(s)=OsBAK1-10;Oryzabase Gene Name Synonym(s)=bri1-associated receptor kinase 1 (BAK1) homologue 10;Note=Similar to BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1.;Transcript_evidence=AK060798 (DDBJ%2C Best hit);ORF_evidence=B6SW87 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-033-F02;Oryzabase=19185;Expression=AK060798;TENOR=Os03t0266800-02;KEGG=Os03t0266800-02
Chr03	irgsp1_rep	five_prime_UTR	8830812	8830812	.	+	.	Parent=Os03t0266800-02
Chr03	irgsp1_rep	CDS	8830813	8830954	.	+	0	Parent=Os03t0266800-02
Chr03	irgsp1_rep	CDS	8831033	8831365	.	+	2	Parent=Os03t0266800-02
Chr03	irgsp1_rep	CDS	8832386	8832631	.	+	2	Parent=Os03t0266800-02
Chr03	irgsp1_rep	CDS	8832776	8832909	.	+	2	Parent=Os03t0266800-02
Chr03	irgsp1_rep	CDS	8833024	8833236	.	+	0	Parent=Os03t0266800-02
Chr03	irgsp1_rep	three_prime_UTR	8833237	8833478	.	+	.	Parent=Os03t0266800-02
Chr03	irgsp1_rep	mRNA	8833718	8834470	.	-	.	ID=Os03t0266900-02;Name=Os03t0266900-02;Locus_id=Os03g0266900;CGSNL Gene Symbol=HSP17.3;CGSNL Gene Name=17.3 KDA CLASS I HEAT SHOCK PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsHsp17.3%2C OsHSP17.3%2C Oshsp17.3;Oryzabase Gene Name Synonym(s)=17.3 kDa class I heat shock protein%2C 17.3 kDa heat shock protein%2C 17.3-kD class I heat shock protein;Note=Low molecular mass heat shock protein Oshsp17.3.;Transcript_evidence=AK119243 (DDBJ%2C Best hit),AK119717 (DDBJ%2C Best hit);ORF_evidence=P31673 (UniProt);NIAS_FLcDNA=001-120-B05,002-157-F11;Oryzabase=6165;Expression=AK119243;TENOR=Os03t0266900-02;KEGG=Os03t0266900-02
Chr03	irgsp1_rep	five_prime_UTR	8834378	8834470	.	-	.	Parent=Os03t0266900-02
Chr03	irgsp1_rep	CDS	8833913	8834377	.	-	0	Parent=Os03t0266900-02
Chr03	irgsp1_rep	three_prime_UTR	8833718	8833912	.	-	.	Parent=Os03t0266900-02
Chr03	irgsp1_rep	mRNA	8834869	8835576	.	+	.	ID=Os03t0267000-01;Name=Os03t0267000-01;Locus_id=Os03g0267000;RAP-DB Gene Symbol Synonym(s)=OsMSR3%2C OsHsp18.0-CI;RAP-DB Gene Name Synonym(s)=multiple stress-responsive gene 3;CGSNL Gene Symbol=HSP18.0;CGSNL Gene Name=18.0-KD CLASS I HEAT SHOCK PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsHSP18.0-CI%2C HSP18.0-CI%2C OsHsp18.0%2C OsHSP18.0%2C Oshsp18.0%2C OsSHSP1%2C SHSP1%2C OsMSR3%2C MSR3%2C OsHSP20%2C HSP20%2C OsHSP18.6%2C HSP18.6;Oryzabase Gene Name Synonym(s)=18.0 kDa class I heat shock protein%2C 18.0 kDa heat shock protein%2C 18.0-kD class I heat shock protein%2C multiple stress responsive gene 3%2C small heat shock protein 20;Note=Small heat shock protein%2C Heavy metal resistance%2C Regulation of Cu tolerance%2C Regulation of bacterial leaf streak (BLS) and bacterial blight (BB) resistance;Transcript_evidence=X75616 (Tainung 67);ORF_evidence=Q84Q72;InterPro=HSP20-like chaperone (IPR008978),Alpha crystallin/Hsp20 domain (IPR002068);Manual Curation=May 29%2C 2020;Literature_PMID=32462553,31816902,8522180;Oryzabase=10406;Expression=X75616;TENOR=Os03t0267000-00;KEGG=Os03t0267000-00
Chr03	irgsp1_rep	five_prime_UTR	8834869	8834944	.	+	.	Parent=Os03t0267000-01
Chr03	irgsp1_rep	CDS	8834945	8835430	.	+	0	Parent=Os03t0267000-01
Chr03	irgsp1_rep	three_prime_UTR	8835431	8835576	.	+	.	Parent=Os03t0267000-01
Chr03	irgsp1_rep	mRNA	8837183	8841204	.	+	.	ID=Os03t0267100-01;Name=Os03t0267100-01;Locus_id=Os03g0267100;Note=Hypothetical protein.;Transcript_evidence=AK120655 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013157L10;Expression=AK120655;TENOR=Os03t0267100-01;KEGG=Os03t0267100-01
Chr03	irgsp1_rep	five_prime_UTR	8837183	8838046	.	+	.	Parent=Os03t0267100-01
Chr03	irgsp1_rep	CDS	8838047	8838550	.	+	0	Parent=Os03t0267100-01
Chr03	irgsp1_rep	three_prime_UTR	8838551	8841204	.	+	.	Parent=Os03t0267100-01
Chr03	irgsp1_rep	mRNA	8837821	8838527	.	-	.	ID=Os03t0267200-01;Name=Os03t0267200-01;Locus_id=Os03g0267200;CGSNL Gene Symbol=HSP17.7;CGSNL Gene Name=17.7 KDA CLASS I HEAT SHOCK PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsHsp17.7%2C OsHSP17.4-CI%2C OsHSP17.7%2C Oshsp17.7;Oryzabase Gene Name Synonym(s)=17.7 kDa class I heat shock protein%2C 17.7 kDa heat shock protein%2C 17.7-kD class I heat shock protein;Note=Low molecular mass heat shock protein Oshsp17.7.;Transcript_evidence=AK069547 (DDBJ%2C Best hit);ORF_evidence=E5D3J9 (UniProt);InterPro=Heat shock protein Hsp20 (IPR002068),HSP20-like chaperone (IPR008978);NIAS_FLcDNA=J023021P13;Oryzabase=6166;Expression=AK069547;TENOR=Os03t0267200-01;KEGG=Os03t0267200-01
Chr03	irgsp1_rep	five_prime_UTR	8838511	8838527	.	-	.	Parent=Os03t0267200-01
Chr03	irgsp1_rep	CDS	8838031	8838510	.	-	0	Parent=Os03t0267200-01
Chr03	irgsp1_rep	three_prime_UTR	8837821	8838030	.	-	.	Parent=Os03t0267200-01
Chr03	irgsp1_rep	mRNA	8841320	8843028	.	-	.	ID=Os03t0267300-01;Name=Os03t0267300-01;Locus_id=Os03g0267300;Oryzabase Gene Symbol Synonym(s)=OsCFR;Oryzabase Gene Name Synonym(s)="chloroplastic fructose 1%2C 6-bisphosphatase"%2C chloroplastic FruP2ase%2C "fructose-1%2C 6-bisphosphatase plastidic isoform"%2C "Plastidic Fructose-1%2C 6-Bisphosphatase";Note=Similar to Fructose-1%2C6-bisphosphatase%2C chloroplast precursor (EC 3.1.3.11) (D- fructose-1%2C6-bisphosphate 1-phosphohydrolase) (FBPase).;Transcript_evidence=AK062233 (DDBJ%2C Best hit);ORF_evidence=B0LSR2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: phosphoric ester hydrolase activity (GO:0042578);InterPro=Fructose-1%2C6-bisphosphatase class 1/Sedoheputulose-1%2C7-bisphosphatase (IPR000146),Fructose-1%2C6-bisphosphatase%2C active site (IPR020548);NIAS_FLcDNA=001-047-D10;Oryzabase=15539;Expression=AK062233;TENOR=Os03t0267300-01;KEGG=Os03t0267300-01 (EC:3.1.3.11)
Chr03	irgsp1_rep	five_prime_UTR	8842957	8843028	.	-	.	Parent=Os03t0267300-01
Chr03	irgsp1_rep	CDS	8842540	8842956	.	-	0	Parent=Os03t0267300-01
Chr03	irgsp1_rep	CDS	8842219	8842443	.	-	0	Parent=Os03t0267300-01
Chr03	irgsp1_rep	CDS	8841617	8842123	.	-	0	Parent=Os03t0267300-01
Chr03	irgsp1_rep	CDS	8841431	8841502	.	-	0	Parent=Os03t0267300-01
Chr03	irgsp1_rep	three_prime_UTR	8841320	8841430	.	-	.	Parent=Os03t0267300-01
Chr03	irgsp1_rep	mRNA	8841311	8843013	.	-	.	ID=Os03t0267300-02;Name=Os03t0267300-02;Locus_id=Os03g0267300;Oryzabase Gene Symbol Synonym(s)=OsCFR;Oryzabase Gene Name Synonym(s)="chloroplastic fructose 1%2C 6-bisphosphatase"%2C chloroplastic FruP2ase%2C "fructose-1%2C 6-bisphosphatase plastidic isoform"%2C "Plastidic Fructose-1%2C 6-Bisphosphatase";Note=Similar to Chloroplast fructose-1%2C6-bisphosphatase.;Transcript_evidence=AK065201 (DDBJ%2C Best hit);ORF_evidence=B0LSR2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: phosphoric ester hydrolase activity (GO:0042578);InterPro=Fructose-1%2C6-bisphosphatase class 1/Sedoheputulose-1%2C7-bisphosphatase (IPR000146);NIAS_FLcDNA=J013002E24;Oryzabase=15539;Expression=AK065201;TENOR=Os03t0267300-02;KEGG=Os03t0267300-02 (EC:3.1.3.11)
Chr03	irgsp1_rep	five_prime_UTR	8842957	8843013	.	-	.	Parent=Os03t0267300-02
Chr03	irgsp1_rep	CDS	8842540	8842956	.	-	0	Parent=Os03t0267300-02
Chr03	irgsp1_rep	CDS	8842174	8842443	.	-	0	Parent=Os03t0267300-02
Chr03	irgsp1_rep	three_prime_UTR	8841617	8842173	.	-	.	Parent=Os03t0267300-02
Chr03	irgsp1_rep	three_prime_UTR	8841311	8841502	.	-	.	Parent=Os03t0267300-02
Chr03	irgsp1_rep	mRNA	8844360	8844856	.	+	.	ID=Os03t0267400-00;Name=Os03t0267400-00;Locus_id=Os03g0267400;Note=Conserved hypothetical protein.;Transcript_evidence=EU948725 (DDBJ);ORF_evidence=NP_001173012.1 (RefSeq);TENOR=Os03t0267400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	8844360	8844398	.	+	.	Parent=Os03t0267400-00
Chr03	irgsp1_rep	CDS	8844399	8844692	.	+	0	Parent=Os03t0267400-00
Chr03	irgsp1_rep	three_prime_UTR	8844693	8844856	.	+	.	Parent=Os03t0267400-00
Chr03	irgsp1_rep	mRNA	8851332	8854390	.	+	.	ID=Os03t0267500-01;Name=Os03t0267500-01;Locus_id=Os03g0267500;Note=Protein of unknown function DUF620 family protein.;Transcript_evidence=AK061753 (DDBJ%2C Best hit);ORF_evidence=Q84K85 (UniProt);InterPro=Protein of unknown function DUF620 (IPR006873);NIAS_FLcDNA=001-038-H10;Expression=AK061753;TENOR=Os03t0267500-01;KEGG=Os03t0267500-01
Chr03	irgsp1_rep	five_prime_UTR	8851332	8851434	.	+	.	Parent=Os03t0267500-01
Chr03	irgsp1_rep	CDS	8851435	8851758	.	+	0	Parent=Os03t0267500-01
Chr03	irgsp1_rep	CDS	8851850	8852227	.	+	0	Parent=Os03t0267500-01
Chr03	irgsp1_rep	CDS	8853505	8854128	.	+	0	Parent=Os03t0267500-01
Chr03	irgsp1_rep	three_prime_UTR	8854129	8854390	.	+	.	Parent=Os03t0267500-01
Chr03	irgsp1_rep	mRNA	8851383	8854426	.	+	.	ID=Os03t0267500-02;Name=Os03t0267500-02;Locus_id=Os03g0267500;Note=Protein of unknown function DUF620 family protein.;Transcript_evidence=AK120179 (DDBJ%2C Best hit);ORF_evidence=Q84K85 (UniProt);InterPro=Protein of unknown function DUF620 (IPR006873);NIAS_FLcDNA=J013033K02;Expression=AK120179;TENOR=Os03t0267500-02;KEGG=Os03t0267500-02
Chr03	irgsp1_rep	five_prime_UTR	8851383	8851434	.	+	.	Parent=Os03t0267500-02
Chr03	irgsp1_rep	CDS	8851435	8851758	.	+	0	Parent=Os03t0267500-02
Chr03	irgsp1_rep	CDS	8851850	8852227	.	+	0	Parent=Os03t0267500-02
Chr03	irgsp1_rep	CDS	8853505	8854128	.	+	0	Parent=Os03t0267500-02
Chr03	irgsp1_rep	three_prime_UTR	8854129	8854426	.	+	.	Parent=Os03t0267500-02
Chr03	irgsp1_rep	mRNA	8853502	8853978	.	-	.	ID=Os03t0267550-00;Name=Os03t0267550-00;Locus_id=Os03g0267550;Note=Hypothetical protein.;Transcript_evidence=BT017174 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0267550-00
Chr03	irgsp1_rep	CDS	8853502	8853978	.	-	0	Parent=Os03t0267550-00
Chr03	irgsp1_rep	mRNA	8854646	8859005	.	-	.	ID=Os03t0267600-01;Name=Os03t0267600-01;Locus_id=Os03g0267600;Note=Protein of unknown function DUF3527 domain containing protein.;Transcript_evidence=AK072790 (DDBJ%2C Best hit);ORF_evidence=F2DU30 (UniProt);InterPro=Protein of unknown function DUF3527 (IPR021916);NIAS_FLcDNA=J023142F14;Expression=AK072790;TENOR=Os03t0267600-01;KEGG=Os03t0267600-01
Chr03	irgsp1_rep	five_prime_UTR	8858900	8859005	.	-	.	Parent=Os03t0267600-01
Chr03	irgsp1_rep	five_prime_UTR	8858735	8858826	.	-	.	Parent=Os03t0267600-01
Chr03	irgsp1_rep	five_prime_UTR	8857668	8857769	.	-	.	Parent=Os03t0267600-01
Chr03	irgsp1_rep	CDS	8855256	8857667	.	-	0	Parent=Os03t0267600-01
Chr03	irgsp1_rep	CDS	8854872	8855159	.	-	0	Parent=Os03t0267600-01
Chr03	irgsp1_rep	three_prime_UTR	8854646	8854871	.	-	.	Parent=Os03t0267600-01
Chr03	irgsp1_rep	mRNA	8865964	8869087	.	+	.	ID=Os03t0267700-01;Name=Os03t0267700-01;Locus_id=Os03g0267700;Note=Adenine nucleotide translocator 1 domain containing protein.;Transcript_evidence=AK071979 (DDBJ%2C Best hit),AK105349 (DDBJ%2C Best hit);ORF_evidence=Q84J51 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial inner membrane (GO:0005743),Molecular Function: binding (GO:0005488);InterPro=Mitochondrial carrier protein (IPR002067),Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J013087F10,001-119-A04;TENOR=Os03t0267700-01
Chr03	irgsp1_rep	five_prime_UTR	8865964	8866158	.	+	.	Parent=Os03t0267700-01
Chr03	irgsp1_rep	CDS	8866159	8866392	.	+	0	Parent=Os03t0267700-01
Chr03	irgsp1_rep	CDS	8866798	8866974	.	+	0	Parent=Os03t0267700-01
Chr03	irgsp1_rep	CDS	8867067	8867213	.	+	0	Parent=Os03t0267700-01
Chr03	irgsp1_rep	CDS	8867528	8867629	.	+	0	Parent=Os03t0267700-01
Chr03	irgsp1_rep	CDS	8867716	8867786	.	+	0	Parent=Os03t0267700-01
Chr03	irgsp1_rep	CDS	8867884	8867951	.	+	1	Parent=Os03t0267700-01
Chr03	irgsp1_rep	CDS	8868487	8868728	.	+	2	Parent=Os03t0267700-01
Chr03	irgsp1_rep	three_prime_UTR	8868729	8869087	.	+	.	Parent=Os03t0267700-01
Chr03	irgsp1_rep	mRNA	8870192	8875401	.	-	.	ID=Os03t0267800-01;Name=Os03t0267800-01;Locus_id=Os03g0267800;Note=Zinc finger%2C LIM-type domain containing protein.;Transcript_evidence=AK069586 (DDBJ%2C Best hit);ORF_evidence=XP_002881681.1 (RefSeq);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C LIM-type (IPR001781),Protein of unknown function DUF3633 (IPR022087);NIAS_FLcDNA=J023020C05;Expression=AK069586;TENOR=Os03t0267800-01;KEGG=Os03t0267800-01
Chr03	irgsp1_rep	five_prime_UTR	8875230	8875401	.	-	.	Parent=Os03t0267800-01
Chr03	irgsp1_rep	CDS	8875190	8875229	.	-	0	Parent=Os03t0267800-01
Chr03	irgsp1_rep	CDS	8873197	8873330	.	-	2	Parent=Os03t0267800-01
Chr03	irgsp1_rep	CDS	8872946	8873030	.	-	0	Parent=Os03t0267800-01
Chr03	irgsp1_rep	CDS	8872722	8872854	.	-	2	Parent=Os03t0267800-01
Chr03	irgsp1_rep	CDS	8872521	8872641	.	-	1	Parent=Os03t0267800-01
Chr03	irgsp1_rep	CDS	8872345	8872428	.	-	0	Parent=Os03t0267800-01
Chr03	irgsp1_rep	CDS	8872103	8872222	.	-	0	Parent=Os03t0267800-01
Chr03	irgsp1_rep	CDS	8871718	8871930	.	-	0	Parent=Os03t0267800-01
Chr03	irgsp1_rep	CDS	8871470	8871532	.	-	0	Parent=Os03t0267800-01
Chr03	irgsp1_rep	CDS	8871060	8871175	.	-	0	Parent=Os03t0267800-01
Chr03	irgsp1_rep	CDS	8870901	8870959	.	-	1	Parent=Os03t0267800-01
Chr03	irgsp1_rep	CDS	8870469	8870806	.	-	2	Parent=Os03t0267800-01
Chr03	irgsp1_rep	three_prime_UTR	8870192	8870468	.	-	.	Parent=Os03t0267800-01
Chr03	irgsp1_rep	mRNA	8870459	8871807	.	+	.	ID=Os03t0267850-00;Name=Os03t0267850-00;Locus_id=Os03g0267850;Note=Hypothetical protein.;Transcript_evidence=BT016955 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0267850-00
Chr03	irgsp1_rep	five_prime_UTR	8870459	8870801	.	+	.	Parent=Os03t0267850-00
Chr03	irgsp1_rep	CDS	8870893	8870950	.	+	0	Parent=Os03t0267850-00
Chr03	irgsp1_rep	CDS	8871049	8871205	.	+	2	Parent=Os03t0267850-00
Chr03	irgsp1_rep	CDS	8871694	8871754	.	+	1	Parent=Os03t0267850-00
Chr03	irgsp1_rep	three_prime_UTR	8871755	8871807	.	+	.	Parent=Os03t0267850-00
Chr03	irgsp1_rep	mRNA	8884203	8889672	.	+	.	ID=Os03t0268000-01;Name=Os03t0268000-01;Locus_id=Os03g0268000;RAP-DB Gene Symbol Synonym(s)=OsPP1;RAP-DB Gene Name Synonym(s)=protein phosphatase 1;Oryzabase Gene Symbol Synonym(s)=OsPP47%2C PP47;Oryzabase Gene Name Synonym(s)=Protein phosphatase 47;Note=Protein phosphatase;Transcript_evidence=AK073140;ORF_evidence=P48489;GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Metallo-dependent phosphatase-like (IPR029052),Serine-threonine protein phosphatase%2C N-terminal (IPR031675),Calcineurin-like phosphoesterase domain%2C ApaH type (IPR004843),Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (IPR006186);NIAS_FLcDNA=J033022I01;Manual Curation=February 27%2C 2018;Literature_PMID=23041461,21505434,10080713;Oryzabase=18637;Expression=AK073140;TENOR=Os03t0268000-01;KEGG=Os03t0268000-01 (EC:3.1.3.16);Subcellular location=nucleus (GO:0005634), cytosol (GO:0005829)
Chr03	irgsp1_rep	five_prime_UTR	8884203	8884329	.	+	.	Parent=Os03t0268000-01
Chr03	irgsp1_rep	CDS	8884330	8884549	.	+	0	Parent=Os03t0268000-01
Chr03	irgsp1_rep	CDS	8886928	8887487	.	+	2	Parent=Os03t0268000-01
Chr03	irgsp1_rep	CDS	8887573	8887761	.	+	0	Parent=Os03t0268000-01
Chr03	irgsp1_rep	three_prime_UTR	8887762	8887797	.	+	.	Parent=Os03t0268000-01
Chr03	irgsp1_rep	three_prime_UTR	8889185	8889672	.	+	.	Parent=Os03t0268000-01
Chr03	irgsp1_rep	mRNA	8887288	8889781	.	+	.	ID=Os03t0268000-02;Name=Os03t0268000-02;Locus_id=Os03g0268000;Oryzabase Gene Symbol Synonym(s)=OsPP47%2C PP47;Oryzabase Gene Name Synonym(s)=Protein phosphatase 47;Note=Similar to Serine/threonine protein phosphatase.;Transcript_evidence=AK063856 (DDBJ%2C Best hit);ORF_evidence=B9F783 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (IPR006186);NIAS_FLcDNA=001-122-D05;Oryzabase=18637;Expression=AK063856;TENOR=Os03t0268000-02;KEGG=Os03t0268000-02 (EC:3.1.3.16)
Chr03	irgsp1_rep	five_prime_UTR	8887288	8887289	.	+	.	Parent=Os03t0268000-02
Chr03	irgsp1_rep	CDS	8887290	8887487	.	+	0	Parent=Os03t0268000-02
Chr03	irgsp1_rep	CDS	8887573	8887761	.	+	0	Parent=Os03t0268000-02
Chr03	irgsp1_rep	three_prime_UTR	8887762	8887797	.	+	.	Parent=Os03t0268000-02
Chr03	irgsp1_rep	three_prime_UTR	8889185	8889781	.	+	.	Parent=Os03t0268000-02
Chr03	irgsp1_rep	mRNA	8887710	8889633	.	+	.	ID=Os03t0268000-03;Name=Os03t0268000-03;Locus_id=Os03g0268000;Oryzabase Gene Symbol Synonym(s)=OsPP47%2C PP47;Oryzabase Gene Name Synonym(s)=Protein phosphatase 47;Note=Non-protein coding transcript.;Transcript_evidence=AK058806 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-003-C02;Oryzabase=18637;TENOR=Os03t0268000-03
Chr03	irgsp1_rep	exon	8887710	8887797	.	+	.	Parent=Os03t0268000-03
Chr03	irgsp1_rep	exon	8889185	8889633	.	+	.	Parent=Os03t0268000-03
Chr03	irgsp1_rep	mRNA	8887334	8889515	.	-	.	ID=Os03t0268050-00;Name=Os03t0268050-00;Locus_id=Os03g0268050;Note=Non-protein coding transcript.;Transcript_evidence=BT016437 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0268050-00
Chr03	irgsp1_rep	exon	8889180	8889515	.	-	.	Parent=Os03t0268050-00
Chr03	irgsp1_rep	exon	8887538	8887792	.	-	.	Parent=Os03t0268050-00
Chr03	irgsp1_rep	exon	8887334	8887445	.	-	.	Parent=Os03t0268050-00
Chr03	irgsp1_rep	mRNA	8892244	8895472	.	-	.	ID=Os03t0268100-01;Name=Os03t0268100-01;Locus_id=Os03g0268100;Note=Similar to T-snare.;Transcript_evidence=AK065357 (DDBJ%2C Best hit);ORF_evidence=B6TEY6 (UniProt);NIAS_FLcDNA=J013022G07;Expression=AK065357;TENOR=Os03t0268100-01;KEGG=Os03t0268100-01
Chr03	irgsp1_rep	five_prime_UTR	8895325	8895472	.	-	.	Parent=Os03t0268100-01
Chr03	irgsp1_rep	CDS	8895289	8895324	.	-	0	Parent=Os03t0268100-01
Chr03	irgsp1_rep	CDS	8895073	8895160	.	-	0	Parent=Os03t0268100-01
Chr03	irgsp1_rep	CDS	8894968	8894990	.	-	2	Parent=Os03t0268100-01
Chr03	irgsp1_rep	CDS	8894775	8894849	.	-	0	Parent=Os03t0268100-01
Chr03	irgsp1_rep	CDS	8894639	8894692	.	-	0	Parent=Os03t0268100-01
Chr03	irgsp1_rep	CDS	8894454	8894531	.	-	0	Parent=Os03t0268100-01
Chr03	irgsp1_rep	CDS	8894300	8894368	.	-	0	Parent=Os03t0268100-01
Chr03	irgsp1_rep	CDS	8894085	8894237	.	-	0	Parent=Os03t0268100-01
Chr03	irgsp1_rep	CDS	8893825	8893993	.	-	0	Parent=Os03t0268100-01
Chr03	irgsp1_rep	CDS	8893611	8893651	.	-	2	Parent=Os03t0268100-01
Chr03	irgsp1_rep	CDS	8893234	8893323	.	-	0	Parent=Os03t0268100-01
Chr03	irgsp1_rep	CDS	8893050	8893154	.	-	0	Parent=Os03t0268100-01
Chr03	irgsp1_rep	CDS	8892781	8892951	.	-	0	Parent=Os03t0268100-01
Chr03	irgsp1_rep	CDS	8892564	8892673	.	-	0	Parent=Os03t0268100-01
Chr03	irgsp1_rep	CDS	8892401	8892476	.	-	1	Parent=Os03t0268100-01
Chr03	irgsp1_rep	three_prime_UTR	8892244	8892400	.	-	.	Parent=Os03t0268100-01
Chr03	irgsp1_rep	mRNA	8896444	8901979	.	-	.	ID=Os03t0268200-01;Name=Os03t0268200-01;Locus_id=Os03g0268200;CGSNL Gene Symbol=ATG1A;CGSNL Gene Name=AUTOPHAGY ASSOCIATED GENE 1A;Oryzabase Gene Symbol Synonym(s)=OsATG1a;Oryzabase Gene Name Synonym(s)=autophagy 1a;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK101486 (DDBJ%2C Best hit);ORF_evidence=Q10NJ0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033041M21;Oryzabase=9632;Expression=AK101486;TENOR=Os03t0268200-01;KEGG=Os03t0268200-01 (EC:2.7.11.1)
Chr03	irgsp1_rep	five_prime_UTR	8901820	8901979	.	-	.	Parent=Os03t0268200-01
Chr03	irgsp1_rep	CDS	8901547	8901819	.	-	0	Parent=Os03t0268200-01
Chr03	irgsp1_rep	CDS	8900861	8900978	.	-	0	Parent=Os03t0268200-01
Chr03	irgsp1_rep	CDS	8900713	8900771	.	-	2	Parent=Os03t0268200-01
Chr03	irgsp1_rep	CDS	8900508	8900572	.	-	0	Parent=Os03t0268200-01
Chr03	irgsp1_rep	CDS	8899559	8899652	.	-	1	Parent=Os03t0268200-01
Chr03	irgsp1_rep	CDS	8899443	8899472	.	-	0	Parent=Os03t0268200-01
Chr03	irgsp1_rep	three_prime_UTR	8899387	8899442	.	-	.	Parent=Os03t0268200-01
Chr03	irgsp1_rep	three_prime_UTR	8899199	8899304	.	-	.	Parent=Os03t0268200-01
Chr03	irgsp1_rep	three_prime_UTR	8898450	8898522	.	-	.	Parent=Os03t0268200-01
Chr03	irgsp1_rep	three_prime_UTR	8898019	8898374	.	-	.	Parent=Os03t0268200-01
Chr03	irgsp1_rep	three_prime_UTR	8897558	8897928	.	-	.	Parent=Os03t0268200-01
Chr03	irgsp1_rep	three_prime_UTR	8897035	8897308	.	-	.	Parent=Os03t0268200-01
Chr03	irgsp1_rep	three_prime_UTR	8896881	8896951	.	-	.	Parent=Os03t0268200-01
Chr03	irgsp1_rep	three_prime_UTR	8896444	8896780	.	-	.	Parent=Os03t0268200-01
Chr03	irgsp1_rep	mRNA	8896186	8901979	.	-	.	ID=Os03t0268200-02;Name=Os03t0268200-02;Locus_id=Os03g0268200;CGSNL Gene Symbol=ATG1A;CGSNL Gene Name=AUTOPHAGY ASSOCIATED GENE 1A;Oryzabase Gene Symbol Synonym(s)=OsATG1a;Oryzabase Gene Name Synonym(s)=autophagy 1a;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=AK069243 (DDBJ%2C Best hit);ORF_evidence=Q10NJ0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Serine/threonine-protein kinase%2C C-terminal (IPR022708);NIAS_FLcDNA=J023010P21;Oryzabase=9632;Expression=AK069243;TENOR=Os03t0268200-02;KEGG=Os03t0268200-02 (EC:2.7.11.1)
Chr03	irgsp1_rep	five_prime_UTR	8901820	8901979	.	-	.	Parent=Os03t0268200-02
Chr03	irgsp1_rep	CDS	8901547	8901819	.	-	0	Parent=Os03t0268200-02
Chr03	irgsp1_rep	CDS	8900861	8900978	.	-	0	Parent=Os03t0268200-02
Chr03	irgsp1_rep	CDS	8900713	8900771	.	-	2	Parent=Os03t0268200-02
Chr03	irgsp1_rep	CDS	8900508	8900572	.	-	0	Parent=Os03t0268200-02
Chr03	irgsp1_rep	CDS	8899559	8899652	.	-	1	Parent=Os03t0268200-02
Chr03	irgsp1_rep	CDS	8899387	8899467	.	-	0	Parent=Os03t0268200-02
Chr03	irgsp1_rep	CDS	8899199	8899304	.	-	0	Parent=Os03t0268200-02
Chr03	irgsp1_rep	CDS	8898450	8898522	.	-	2	Parent=Os03t0268200-02
Chr03	irgsp1_rep	CDS	8898019	8898374	.	-	1	Parent=Os03t0268200-02
Chr03	irgsp1_rep	CDS	8897558	8897928	.	-	2	Parent=Os03t0268200-02
Chr03	irgsp1_rep	CDS	8897035	8897308	.	-	0	Parent=Os03t0268200-02
Chr03	irgsp1_rep	CDS	8896881	8896951	.	-	2	Parent=Os03t0268200-02
Chr03	irgsp1_rep	CDS	8896577	8896780	.	-	0	Parent=Os03t0268200-02
Chr03	irgsp1_rep	three_prime_UTR	8896186	8896576	.	-	.	Parent=Os03t0268200-02
Chr03	irgsp1_rep	mRNA	8897890	8901979	.	-	.	ID=Os03t0268200-03;Name=Os03t0268200-03;Locus_id=Os03g0268200;CGSNL Gene Symbol=ATG1A;CGSNL Gene Name=AUTOPHAGY ASSOCIATED GENE 1A;Oryzabase Gene Symbol Synonym(s)=OsATG1a;Oryzabase Gene Name Synonym(s)=autophagy 1a;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=AK121160 (DDBJ%2C Best hit);ORF_evidence=Q10NJ0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023079P09;Oryzabase=9632;Expression=AK121160;TENOR=Os03t0268200-03;KEGG=Os03t0268200-03 (EC:2.7.11.1)
Chr03	irgsp1_rep	five_prime_UTR	8901820	8901979	.	-	.	Parent=Os03t0268200-03
Chr03	irgsp1_rep	CDS	8901439	8901819	.	-	0	Parent=Os03t0268200-03
Chr03	irgsp1_rep	three_prime_UTR	8897890	8901438	.	-	.	Parent=Os03t0268200-03
Chr03	irgsp1_rep	mRNA	8896282	8901941	.	-	.	ID=Os03t0268200-04;Name=Os03t0268200-04;Locus_id=Os03g0268200;CGSNL Gene Symbol=ATG1A;CGSNL Gene Name=AUTOPHAGY ASSOCIATED GENE 1A;Oryzabase Gene Symbol Synonym(s)=OsATG1a;Oryzabase Gene Name Synonym(s)=autophagy 1a;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=AK099658 (DDBJ%2C Best hit);ORF_evidence=Q10NJ0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Serine/threonine-protein kinase%2C C-terminal (IPR022708);NIAS_FLcDNA=J013066E23;Oryzabase=9632;Expression=AK099658;TENOR=Os03t0268200-04;KEGG=Os03t0268200-04 (EC:2.7.11.1)
Chr03	irgsp1_rep	five_prime_UTR	8901820	8901941	.	-	.	Parent=Os03t0268200-04
Chr03	irgsp1_rep	CDS	8901547	8901819	.	-	0	Parent=Os03t0268200-04
Chr03	irgsp1_rep	CDS	8900861	8900978	.	-	0	Parent=Os03t0268200-04
Chr03	irgsp1_rep	CDS	8900713	8900771	.	-	2	Parent=Os03t0268200-04
Chr03	irgsp1_rep	CDS	8900508	8900572	.	-	0	Parent=Os03t0268200-04
Chr03	irgsp1_rep	CDS	8899559	8899652	.	-	1	Parent=Os03t0268200-04
Chr03	irgsp1_rep	CDS	8899387	8899467	.	-	0	Parent=Os03t0268200-04
Chr03	irgsp1_rep	CDS	8899199	8899304	.	-	0	Parent=Os03t0268200-04
Chr03	irgsp1_rep	CDS	8898450	8898522	.	-	2	Parent=Os03t0268200-04
Chr03	irgsp1_rep	CDS	8898019	8898374	.	-	1	Parent=Os03t0268200-04
Chr03	irgsp1_rep	CDS	8897558	8897928	.	-	2	Parent=Os03t0268200-04
Chr03	irgsp1_rep	CDS	8897035	8897308	.	-	0	Parent=Os03t0268200-04
Chr03	irgsp1_rep	CDS	8896881	8896951	.	-	2	Parent=Os03t0268200-04
Chr03	irgsp1_rep	CDS	8896577	8896780	.	-	0	Parent=Os03t0268200-04
Chr03	irgsp1_rep	three_prime_UTR	8896282	8896576	.	-	.	Parent=Os03t0268200-04
Chr03	irgsp1_rep	mRNA	8896282	8897471	.	-	.	ID=Os03t0268200-05;Name=Os03t0268200-05;Locus_id=Os03g0268200;CGSNL Gene Symbol=ATG1A;CGSNL Gene Name=AUTOPHAGY ASSOCIATED GENE 1A;Oryzabase Gene Symbol Synonym(s)=OsATG1a;Oryzabase Gene Name Synonym(s)=autophagy 1a;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=AK058854 (DDBJ%2C Best hit);ORF_evidence=Q10NJ0 (UniProt);GO=Molecular Function: protein serine/threonine kinase activity (GO:0004674);InterPro=Serine/threonine-protein kinase%2C C-terminal (IPR022708);NIAS_FLcDNA=001-005-B01;Oryzabase=9632;Expression=AK058854;TENOR=Os03t0268200-05;KEGG=Os03t0268200-05
Chr03	irgsp1_rep	five_prime_UTR	8897309	8897471	.	-	.	Parent=Os03t0268200-05
Chr03	irgsp1_rep	CDS	8897035	8897308	.	-	0	Parent=Os03t0268200-05
Chr03	irgsp1_rep	CDS	8896881	8896951	.	-	2	Parent=Os03t0268200-05
Chr03	irgsp1_rep	CDS	8896577	8896780	.	-	0	Parent=Os03t0268200-05
Chr03	irgsp1_rep	three_prime_UTR	8896282	8896576	.	-	.	Parent=Os03t0268200-05
Chr03	irgsp1_rep	mRNA	8896382	8901919	.	+	.	ID=Os03t0268250-00;Name=Os03t0268250-00;Locus_id=Os03g0268250;Note=Hypothetical protein.;Transcript_evidence=tplb0026l19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0268250-00
Chr03	irgsp1_rep	five_prime_UTR	8896382	8896813	.	+	.	Parent=Os03t0268250-00
Chr03	irgsp1_rep	five_prime_UTR	8896995	8897290	.	+	.	Parent=Os03t0268250-00
Chr03	irgsp1_rep	five_prime_UTR	8897538	8897928	.	+	.	Parent=Os03t0268250-00
Chr03	irgsp1_rep	five_prime_UTR	8898019	8898376	.	+	.	Parent=Os03t0268250-00
Chr03	irgsp1_rep	five_prime_UTR	8898456	8898516	.	+	.	Parent=Os03t0268250-00
Chr03	irgsp1_rep	five_prime_UTR	8899190	8899281	.	+	.	Parent=Os03t0268250-00
Chr03	irgsp1_rep	five_prime_UTR	8899363	8899469	.	+	.	Parent=Os03t0268250-00
Chr03	irgsp1_rep	five_prime_UTR	8899552	8899641	.	+	.	Parent=Os03t0268250-00
Chr03	irgsp1_rep	five_prime_UTR	8900500	8900572	.	+	.	Parent=Os03t0268250-00
Chr03	irgsp1_rep	five_prime_UTR	8900713	8900771	.	+	.	Parent=Os03t0268250-00
Chr03	irgsp1_rep	five_prime_UTR	8900861	8900977	.	+	.	Parent=Os03t0268250-00
Chr03	irgsp1_rep	five_prime_UTR	8901546	8901579	.	+	.	Parent=Os03t0268250-00
Chr03	irgsp1_rep	CDS	8901580	8901867	.	+	0	Parent=Os03t0268250-00
Chr03	irgsp1_rep	three_prime_UTR	8901868	8901919	.	+	.	Parent=Os03t0268250-00
Chr03	irgsp1_rep	mRNA	8902743	8906318	.	-	.	ID=Os03t0268300-01;Name=Os03t0268300-01;Locus_id=Os03g0268300;RAP-DB Gene Symbol Synonym(s)=OsDGD2&beta%3B%2C OsDGD2b;CGSNL Gene Symbol=DGD2B;CGSNL Gene Name=DIGALACTOSYLDIACYLGLYCEROL SYNTHASE 2 BETA;Oryzabase Gene Symbol Synonym(s)=OsDGD2beta DGD2beta%2C OsDGD2B;Oryzabase Gene Name Synonym(s)=Digalactosyldiacylglycerol synthase 2 beta%2C DGDG synthase 2 beta;Note=Digalactosyldiacylglycerol (DGDG) synthase%2C Anther and pollen development;Transcript_evidence=AK102684;ORF_evidence=Q84JT4;InterPro=Glycosyl transferase%2C family 1 (IPR001296);NIAS_FLcDNA=J033102K23;Manual Curation=August 29%2C 2019;Literature_PMID=31414258;Oryzabase=23297;Expression=AK102684;TENOR=Os03t0268300-01;KEGG=Os03t0268300-01 (EC:2.4.1.241);Subcellular location=chloroplast (GO:0009507)
Chr03	irgsp1_rep	five_prime_UTR	8906245	8906318	.	-	.	Parent=Os03t0268300-01
Chr03	irgsp1_rep	five_prime_UTR	8905790	8905822	.	-	.	Parent=Os03t0268300-01
Chr03	irgsp1_rep	CDS	8905508	8905789	.	-	0	Parent=Os03t0268300-01
Chr03	irgsp1_rep	CDS	8904734	8905000	.	-	0	Parent=Os03t0268300-01
Chr03	irgsp1_rep	CDS	8903818	8904167	.	-	0	Parent=Os03t0268300-01
Chr03	irgsp1_rep	CDS	8903177	8903669	.	-	1	Parent=Os03t0268300-01
Chr03	irgsp1_rep	three_prime_UTR	8902743	8903176	.	-	.	Parent=Os03t0268300-01
Chr03	irgsp1_rep	mRNA	8902812	8904795	.	-	.	ID=Os03t0268300-02;Name=Os03t0268300-02;Locus_id=Os03g0268300;CGSNL Gene Symbol=DGD2B;CGSNL Gene Name=DIGALACTOSYLDIACYLGLYCEROL SYNTHASE 2 BETA;Oryzabase Gene Symbol Synonym(s)=OsDGD2beta DGD2beta%2C OsDGD2B;Oryzabase Gene Name Synonym(s)=Digalactosyldiacylglycerol synthase 2 beta%2C DGDG synthase 2 beta;Note=Similar to DGD2 (digalactosyldiacylglycerol synthase 2)%3B digalactosyldiacylglycerol synthase / transferase%2C transferring glycosyl groups.;Transcript_evidence=AK062265 (DDBJ%2C Best hit);ORF_evidence=NP_191964.2 (RefSeq);GO=Biological Process: biosynthetic process (GO:0009058);InterPro=Glycosyl transferase%2C family 1 (IPR001296);NIAS_FLcDNA=001-047-H10;Oryzabase=23297;Expression=AK062265;TENOR=Os03t0268300-02;KEGG=Os03t0268300-02 (EC:2.4.1.241)
Chr03	irgsp1_rep	five_prime_UTR	8904794	8904795	.	-	.	Parent=Os03t0268300-02
Chr03	irgsp1_rep	CDS	8904734	8904793	.	-	0	Parent=Os03t0268300-02
Chr03	irgsp1_rep	CDS	8903818	8904167	.	-	0	Parent=Os03t0268300-02
Chr03	irgsp1_rep	CDS	8903177	8903669	.	-	1	Parent=Os03t0268300-02
Chr03	irgsp1_rep	three_prime_UTR	8902812	8903176	.	-	.	Parent=Os03t0268300-02
Chr03	irgsp1_rep	mRNA	8909302	8912790	.	-	.	ID=Os03t0268400-01;Name=Os03t0268400-01;Locus_id=Os03g0268400;Oryzabase Gene Symbol Synonym(s)=OsMPG3%2C MPG3%2C OsVTC1-3%2C VTC1-3;Oryzabase Gene Name Synonym(s)=mannose-1-phosphate guanyl transferase 3;Note=Similar to Mannose-1-phosphate guanyltransferase (EC 2.7.7.13) (ATP-mannose-1- phosphate guanylyltransferase) (GDP-mannose pyrophosphorylase) (NDP- hexose pyrophosphorylase).;Transcript_evidence=AK121972 (DDBJ%2C Best hit);ORF_evidence=C0KWD9 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: transferase activity (GO:0016740),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=Bacterial transferase hexapeptide repeat (IPR001451),Nucleotidyl transferase (IPR005835),Trimeric LpxA-like (IPR011004);NIAS_FLcDNA=J033108I03;Oryzabase=11517;Expression=AK121972;TENOR=Os03t0268400-01;KEGG=Os03t0268400-01 (EC:2.7.7.13)
Chr03	irgsp1_rep	five_prime_UTR	8912641	8912790	.	-	.	Parent=Os03t0268400-01
Chr03	irgsp1_rep	five_prime_UTR	8911513	8911546	.	-	.	Parent=Os03t0268400-01
Chr03	irgsp1_rep	CDS	8911402	8911512	.	-	0	Parent=Os03t0268400-01
Chr03	irgsp1_rep	CDS	8910605	8910667	.	-	0	Parent=Os03t0268400-01
Chr03	irgsp1_rep	CDS	8910261	8910500	.	-	0	Parent=Os03t0268400-01
Chr03	irgsp1_rep	CDS	8909504	8910175	.	-	0	Parent=Os03t0268400-01
Chr03	irgsp1_rep	three_prime_UTR	8909302	8909503	.	-	.	Parent=Os03t0268400-01
Chr03	irgsp1_rep	mRNA	8911021	8912718	.	-	.	ID=Os03t0268400-02;Name=Os03t0268400-02;Locus_id=Os03g0268400;Oryzabase Gene Symbol Synonym(s)=OsMPG3%2C MPG3%2C OsVTC1-3%2C VTC1-3;Oryzabase Gene Name Synonym(s)=mannose-1-phosphate guanyl transferase 3;Note=Similar to GDP-D-mannose pyrophosphorylase.;Transcript_evidence=AK109598 (DDBJ%2C Best hit);ORF_evidence=C0KWD9 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=Nucleotidyl transferase (IPR005835);NIAS_FLcDNA=002-137-D09;Oryzabase=11517;Expression=AK109598;TENOR=Os03t0268400-02;KEGG=Os03t0268400-02 (EC:2.7.7.22)
Chr03	irgsp1_rep	five_prime_UTR	8911513	8912718	.	-	.	Parent=Os03t0268400-02
Chr03	irgsp1_rep	CDS	8911339	8911512	.	-	0	Parent=Os03t0268400-02
Chr03	irgsp1_rep	three_prime_UTR	8911021	8911338	.	-	.	Parent=Os03t0268400-02
Chr03	irgsp1_rep	mRNA	8909462	8912972	.	+	.	ID=Os03t0268450-00;Name=Os03t0268450-00;Locus_id=Os03g0268450;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0049h19 (Wheat FLcDNA);ORF_evidence=C0P431 (UniProt);TENOR=Os03t0268450-00
Chr03	irgsp1_rep	CDS	8909462	8910154	.	+	0	Parent=Os03t0268450-00
Chr03	irgsp1_rep	CDS	8910239	8910268	.	+	0	Parent=Os03t0268450-00
Chr03	irgsp1_rep	three_prime_UTR	8910269	8910488	.	+	.	Parent=Os03t0268450-00
Chr03	irgsp1_rep	three_prime_UTR	8910600	8910677	.	+	.	Parent=Os03t0268450-00
Chr03	irgsp1_rep	three_prime_UTR	8911411	8911651	.	+	.	Parent=Os03t0268450-00
Chr03	irgsp1_rep	three_prime_UTR	8912724	8912972	.	+	.	Parent=Os03t0268450-00
Chr03	irgsp1_rep	mRNA	8921424	8923437	.	-	.	ID=Os03t0268600-01;Name=Os03t0268600-01;Locus_id=Os03g0268600;Oryzabase Gene Symbol Synonym(s)=OsPP2C30%2C PP2C30%2C OsPP48%2C PP48;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C30%2C protein phosphatase 2C 30%2C protein phosphatase 48;Note=Similar to Protein phosphatase type 2C.;Transcript_evidence=AK069274 (DDBJ%2C Best hit);ORF_evidence=B6TRT3 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J023012K18;Oryzabase=17879;Expression=AK069274;TENOR=Os03t0268600-01;KEGG=Os03t0268600-01
Chr03	irgsp1_rep	five_prime_UTR	8923308	8923437	.	-	.	Parent=Os03t0268600-01
Chr03	irgsp1_rep	CDS	8922957	8923307	.	-	0	Parent=Os03t0268600-01
Chr03	irgsp1_rep	CDS	8922465	8922803	.	-	0	Parent=Os03t0268600-01
Chr03	irgsp1_rep	CDS	8922260	8922365	.	-	0	Parent=Os03t0268600-01
Chr03	irgsp1_rep	CDS	8921744	8922162	.	-	2	Parent=Os03t0268600-01
Chr03	irgsp1_rep	three_prime_UTR	8921424	8921743	.	-	.	Parent=Os03t0268600-01
Chr03	irgsp1_rep	mRNA	8921754	8923310	.	+	.	ID=Os03t0268750-00;Name=Os03t0268750-00;Locus_id=Os03g0268750;Note=Hypothetical gene.;Transcript_evidence=BT086014 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0268750-00;KEGG=Os03t0268750-00
Chr03	irgsp1_rep	five_prime_UTR	8921754	8922157	.	+	.	Parent=Os03t0268750-00
Chr03	irgsp1_rep	five_prime_UTR	8922255	8922486	.	+	.	Parent=Os03t0268750-00
Chr03	irgsp1_rep	CDS	8922487	8922877	.	+	0	Parent=Os03t0268750-00
Chr03	irgsp1_rep	CDS	8922941	8922960	.	+	2	Parent=Os03t0268750-00
Chr03	irgsp1_rep	three_prime_UTR	8922961	8923310	.	+	.	Parent=Os03t0268750-00
Chr03	irgsp1_rep	mRNA	8939417	8941311	.	-	.	ID=Os03t0268900-01;Name=Os03t0268900-01;Locus_id=Os03g0268900;Note=Similar to tropinone reductase.;Transcript_evidence=AK109304 (DDBJ%2C Best hit);ORF_evidence=B6TAE7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);NIAS_FLcDNA=002-188-E03;Expression=AK109304;TENOR=Os03t0268900-01;KEGG=Os03t0268900-01 (EC:1.1.1.206)
Chr03	irgsp1_rep	five_prime_UTR	8941251	8941311	.	-	.	Parent=Os03t0268900-01
Chr03	irgsp1_rep	CDS	8941153	8941250	.	-	0	Parent=Os03t0268900-01
Chr03	irgsp1_rep	CDS	8940833	8941040	.	-	1	Parent=Os03t0268900-01
Chr03	irgsp1_rep	CDS	8939846	8940062	.	-	0	Parent=Os03t0268900-01
Chr03	irgsp1_rep	CDS	8939632	8939759	.	-	2	Parent=Os03t0268900-01
Chr03	irgsp1_rep	three_prime_UTR	8939417	8939631	.	-	.	Parent=Os03t0268900-01
Chr03	irgsp1_rep	mRNA	8938481	8941287	.	-	.	ID=Os03t0268900-02;Name=Os03t0268900-02;Locus_id=Os03g0268900;Note=Similar to Short chain alcohol dehydrogenase-like.;Transcript_evidence=AK099430 (DDBJ%2C Best hit);ORF_evidence=B6TAE7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);NIAS_FLcDNA=J013012E01;Expression=AK099430;TENOR=Os03t0268900-02;KEGG=Os03t0268900-02 (EC:1.1.1.206)
Chr03	irgsp1_rep	five_prime_UTR	8941251	8941287	.	-	.	Parent=Os03t0268900-02
Chr03	irgsp1_rep	CDS	8941153	8941250	.	-	0	Parent=Os03t0268900-02
Chr03	irgsp1_rep	CDS	8940833	8941040	.	-	1	Parent=Os03t0268900-02
Chr03	irgsp1_rep	CDS	8939846	8940062	.	-	0	Parent=Os03t0268900-02
Chr03	irgsp1_rep	CDS	8939653	8939759	.	-	2	Parent=Os03t0268900-02
Chr03	irgsp1_rep	CDS	8938682	8938864	.	-	0	Parent=Os03t0268900-02
Chr03	irgsp1_rep	three_prime_UTR	8938481	8938681	.	-	.	Parent=Os03t0268900-02
Chr03	irgsp1_rep	mRNA	8945289	8947912	.	-	.	ID=Os03t0269000-01;Name=Os03t0269000-01;Locus_id=Os03g0269000;Note=Short chain alcohol dehydrogenase-like.;Transcript_evidence=AK062166 (DDBJ%2C Best hit);ORF_evidence=B6TAE7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);NIAS_FLcDNA=001-046-B08;TENOR=Os03t0269000-01
Chr03	irgsp1_rep	five_prime_UTR	8947832	8947912	.	-	.	Parent=Os03t0269000-01
Chr03	irgsp1_rep	CDS	8947731	8947831	.	-	0	Parent=Os03t0269000-01
Chr03	irgsp1_rep	CDS	8947407	8947614	.	-	1	Parent=Os03t0269000-01
Chr03	irgsp1_rep	CDS	8946484	8946700	.	-	0	Parent=Os03t0269000-01
Chr03	irgsp1_rep	CDS	8946330	8946408	.	-	2	Parent=Os03t0269000-01
Chr03	irgsp1_rep	CDS	8945573	8945609	.	-	1	Parent=Os03t0269000-01
Chr03	irgsp1_rep	three_prime_UTR	8945289	8945572	.	-	.	Parent=Os03t0269000-01
Chr03	irgsp1_rep	mRNA	8945292	8947844	.	-	.	ID=Os03t0269000-02;Name=Os03t0269000-02;Locus_id=Os03g0269000;Note=Short chain alcohol dehydrogenase-like.;Transcript_evidence=AK098913 (DDBJ%2C Best hit);ORF_evidence=B6TAE7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);NIAS_FLcDNA=J013002I11;TENOR=Os03t0269000-02
Chr03	irgsp1_rep	five_prime_UTR	8947832	8947844	.	-	.	Parent=Os03t0269000-02
Chr03	irgsp1_rep	CDS	8947731	8947831	.	-	0	Parent=Os03t0269000-02
Chr03	irgsp1_rep	CDS	8947407	8947614	.	-	1	Parent=Os03t0269000-02
Chr03	irgsp1_rep	CDS	8946484	8946700	.	-	0	Parent=Os03t0269000-02
Chr03	irgsp1_rep	CDS	8946330	8946408	.	-	2	Parent=Os03t0269000-02
Chr03	irgsp1_rep	CDS	8945573	8945609	.	-	1	Parent=Os03t0269000-02
Chr03	irgsp1_rep	three_prime_UTR	8945292	8945572	.	-	.	Parent=Os03t0269000-02
Chr03	irgsp1_rep	mRNA	8950027	8952082	.	-	.	ID=Os03t0269100-01;Name=Os03t0269100-01;Locus_id=Os03g0269100;Oryzabase Gene Symbol Synonym(s)=OsSAG13;Oryzabase Gene Name Synonym(s)=Senescence-associated Gene13;Note=Short chain alcohol dehydrogenase-like.;Transcript_evidence=AK058655 (DDBJ%2C Best hit);ORF_evidence=B6TAE7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);NIAS_FLcDNA=001-018-F07;Oryzabase=11670;TENOR=Os03t0269100-01;KEGG=Os03t0269100-01 (EC:1.1.1.206)
Chr03	irgsp1_rep	five_prime_UTR	8952050	8952082	.	-	.	Parent=Os03t0269100-01
Chr03	irgsp1_rep	CDS	8951961	8952049	.	-	0	Parent=Os03t0269100-01
Chr03	irgsp1_rep	CDS	8951636	8951843	.	-	1	Parent=Os03t0269100-01
Chr03	irgsp1_rep	CDS	8951028	8951244	.	-	0	Parent=Os03t0269100-01
Chr03	irgsp1_rep	CDS	8950810	8950916	.	-	2	Parent=Os03t0269100-01
Chr03	irgsp1_rep	CDS	8950350	8950538	.	-	0	Parent=Os03t0269100-01
Chr03	irgsp1_rep	three_prime_UTR	8950027	8950349	.	-	.	Parent=Os03t0269100-01
Chr03	irgsp1_rep	mRNA	8950039	8952082	.	-	.	ID=Os03t0269100-02;Name=Os03t0269100-02;Locus_id=Os03g0269100;Oryzabase Gene Symbol Synonym(s)=OsSAG13;Oryzabase Gene Name Synonym(s)=Senescence-associated Gene13;Note=Similar to tropinone reductase.;Transcript_evidence=AK069762 (DDBJ%2C Best hit);ORF_evidence=B6TAE7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);NIAS_FLcDNA=J023027K22;Oryzabase=11670;TENOR=Os03t0269100-02;KEGG=Os03t0269100-02 (EC:1.1.1.206)
Chr03	irgsp1_rep	five_prime_UTR	8952050	8952082	.	-	.	Parent=Os03t0269100-02
Chr03	irgsp1_rep	CDS	8951636	8952049	.	-	0	Parent=Os03t0269100-02
Chr03	irgsp1_rep	CDS	8951028	8951244	.	-	0	Parent=Os03t0269100-02
Chr03	irgsp1_rep	CDS	8950810	8950916	.	-	2	Parent=Os03t0269100-02
Chr03	irgsp1_rep	CDS	8950350	8950538	.	-	0	Parent=Os03t0269100-02
Chr03	irgsp1_rep	three_prime_UTR	8950039	8950349	.	-	.	Parent=Os03t0269100-02
Chr03	irgsp1_rep	mRNA	8964025	8966806	.	-	.	ID=Os03t0269300-01;Name=Os03t0269300-01;Locus_id=Os03g0269300;Note=Protein kinase-like domain containing protein.;Transcript_evidence=AK111884 (DDBJ%2C Best hit);ORF_evidence=B6SXS9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033059J17;Expression=AK111884;TENOR=Os03t0269300-01;KEGG=Os03t0269300-01
Chr03	irgsp1_rep	five_prime_UTR	8966773	8966806	.	-	.	Parent=Os03t0269300-01
Chr03	irgsp1_rep	CDS	8966298	8966772	.	-	0	Parent=Os03t0269300-01
Chr03	irgsp1_rep	CDS	8965744	8966208	.	-	2	Parent=Os03t0269300-01
Chr03	irgsp1_rep	CDS	8965486	8965572	.	-	2	Parent=Os03t0269300-01
Chr03	irgsp1_rep	CDS	8965319	8965389	.	-	2	Parent=Os03t0269300-01
Chr03	irgsp1_rep	CDS	8965120	8965196	.	-	0	Parent=Os03t0269300-01
Chr03	irgsp1_rep	CDS	8964866	8965013	.	-	1	Parent=Os03t0269300-01
Chr03	irgsp1_rep	CDS	8964565	8964726	.	-	0	Parent=Os03t0269300-01
Chr03	irgsp1_rep	CDS	8964133	8964354	.	-	0	Parent=Os03t0269300-01
Chr03	irgsp1_rep	three_prime_UTR	8964025	8964132	.	-	.	Parent=Os03t0269300-01
Chr03	irgsp1_rep	mRNA	8964027	8966806	.	-	.	ID=Os03t0269300-02;Name=Os03t0269300-02;Locus_id=Os03g0269300;Note=Hypothetical conserved gene.;Transcript_evidence=AK111855 (DDBJ%2C Best hit);ORF_evidence=Q84Q68 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J033016N09;Expression=AK111855;TENOR=Os03t0269300-02;KEGG=Os03t0269300-02
Chr03	irgsp1_rep	five_prime_UTR	8966773	8966806	.	-	.	Parent=Os03t0269300-02
Chr03	irgsp1_rep	CDS	8966298	8966772	.	-	0	Parent=Os03t0269300-02
Chr03	irgsp1_rep	CDS	8965661	8966208	.	-	2	Parent=Os03t0269300-02
Chr03	irgsp1_rep	three_prime_UTR	8964027	8965660	.	-	.	Parent=Os03t0269300-02
Chr03	irgsp1_rep	mRNA	8968837	8969846	.	+	.	ID=Os03t0269500-01;Name=Os03t0269500-01;Locus_id=Os03g0269500;Note=Hypothetical protein.;Transcript_evidence=AK106776 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=002-115-G09;TENOR=Os03t0269500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	8968837	8969561	.	+	.	Parent=Os03t0269500-01
Chr03	irgsp1_rep	CDS	8969562	8969783	.	+	0	Parent=Os03t0269500-01
Chr03	irgsp1_rep	three_prime_UTR	8969784	8969846	.	+	.	Parent=Os03t0269500-01
Chr03	irgsp1_rep	mRNA	8981683	8982582	.	+	.	ID=Os03t0269601-00;Name=Os03t0269601-00;Locus_id=Os03g0269601;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q84Q65 (UniProt);InterPro=Protein of unknown function DUF604 (IPR006740);TENOR=Os03t0269601-00;KEGG=Os03t0269601-00
Chr03	irgsp1_rep	CDS	8981683	8982582	.	+	0	Parent=Os03t0269601-00
Chr03	irgsp1_rep	mRNA	8983003	8984178	.	+	.	ID=Os03t0269700-01;Name=Os03t0269700-01;Locus_id=Os03g0269700;Note=Protein of unknown function DUF604 family protein.;Transcript_evidence=AK104544 (DDBJ%2C Best hit),AK060334 (DDBJ%2C Best hit);ORF_evidence=A3AGF9 (UniProt);InterPro=Protein of unknown function DUF604 (IPR006740);NIAS_FLcDNA=006-305-B09,001-008-B09;Expression=AK104544;TENOR=Os03t0269700-01;KEGG=Os03t0269700-01
Chr03	irgsp1_rep	CDS	8983003	8983662	.	+	0	Parent=Os03t0269700-01
Chr03	irgsp1_rep	CDS	8983830	8983934	.	+	0	Parent=Os03t0269700-01
Chr03	irgsp1_rep	three_prime_UTR	8983935	8984178	.	+	.	Parent=Os03t0269700-01
Chr03	irgsp1_rep	mRNA	9011629	9016463	.	+	.	ID=Os03t0269900-01;Name=Os03t0269900-01;Locus_id=Os03g0269900;Note=Protein of unknown function DUF604 family protein.;Transcript_evidence=AK101153 (DDBJ%2C Best hit);ORF_evidence=A2XEZ4 (UniProt);InterPro=Protein of unknown function DUF604 (IPR006740);NIAS_FLcDNA=J033027D03;Expression=AK101153;TENOR=Os03t0269900-01;KEGG=Os03t0269900-01
Chr03	irgsp1_rep	five_prime_UTR	9011629	9011747	.	+	.	Parent=Os03t0269900-01
Chr03	irgsp1_rep	CDS	9011748	9012641	.	+	0	Parent=Os03t0269900-01
Chr03	irgsp1_rep	CDS	9015299	9015886	.	+	0	Parent=Os03t0269900-01
Chr03	irgsp1_rep	CDS	9015983	9016084	.	+	0	Parent=Os03t0269900-01
Chr03	irgsp1_rep	three_prime_UTR	9016085	9016463	.	+	.	Parent=Os03t0269900-01
Chr03	irgsp1_rep	mRNA	9015107	9015929	.	-	.	ID=Os03t0269950-01;Name=Os03t0269950-01;Locus_id=Os03g0269950;Note=Non-protein coding transcript.;Transcript_evidence=AK108258 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-141-A11;TENOR=Os03t0269950-01
Chr03	irgsp1_rep	exon	9015107	9015929	.	-	.	Parent=Os03t0269950-01
Chr03	irgsp1_rep	mRNA	9022593	9023708	.	+	.	ID=Os03t0270000-01;Name=Os03t0270000-01;Locus_id=Os03g0270000;Note=Protein of unknown function DUF296 domain containing protein.;Transcript_evidence=AK061579 (DDBJ%2C Best hit),AK106069 (DDBJ%2C Best hit);ORF_evidence=NP_001152652.1 (RefSeq);InterPro=Domain of unknown function DUF296 (IPR005175),Predicted AT-hook DNA-binding (IPR014476);NIAS_FLcDNA=006-311-H06,001-206-H05;Expression=AK061579;TENOR=Os03t0270000-01;KEGG=Os03t0270000-01
Chr03	irgsp1_rep	five_prime_UTR	9022593	9022784	.	+	.	Parent=Os03t0270000-01
Chr03	irgsp1_rep	CDS	9022785	9023561	.	+	0	Parent=Os03t0270000-01
Chr03	irgsp1_rep	three_prime_UTR	9023562	9023708	.	+	.	Parent=Os03t0270000-01
Chr03	irgsp1_rep	mRNA	9029544	9035291	.	-	.	ID=Os03t0270200-01;Name=Os03t0270200-01;Locus_id=Os03g0270200;Note=Hypothetical conserved gene.;Transcript_evidence=AK066896 (DDBJ%2C Best hit);ORF_evidence=Q84JX7 (UniProt);GO=Biological Process: mRNA processing (GO:0006397);InterPro=Splicing factor PWI (IPR002483);NIAS_FLcDNA=J013091L22;Oryzabase=23052;Expression=AK066896;TENOR=Os03t0270200-01;KEGG=Os03t0270200-01
Chr03	irgsp1_rep	five_prime_UTR	9035188	9035291	.	-	.	Parent=Os03t0270200-01
Chr03	irgsp1_rep	CDS	9035167	9035187	.	-	0	Parent=Os03t0270200-01
Chr03	irgsp1_rep	CDS	9034973	9035062	.	-	0	Parent=Os03t0270200-01
Chr03	irgsp1_rep	CDS	9034727	9034849	.	-	0	Parent=Os03t0270200-01
Chr03	irgsp1_rep	CDS	9034005	9034172	.	-	0	Parent=Os03t0270200-01
Chr03	irgsp1_rep	CDS	9033479	9033565	.	-	0	Parent=Os03t0270200-01
Chr03	irgsp1_rep	CDS	9033241	9033338	.	-	0	Parent=Os03t0270200-01
Chr03	irgsp1_rep	CDS	9031809	9032543	.	-	1	Parent=Os03t0270200-01
Chr03	irgsp1_rep	CDS	9031604	9031717	.	-	1	Parent=Os03t0270200-01
Chr03	irgsp1_rep	CDS	9031388	9031525	.	-	1	Parent=Os03t0270200-01
Chr03	irgsp1_rep	CDS	9031206	9031286	.	-	1	Parent=Os03t0270200-01
Chr03	irgsp1_rep	CDS	9030998	9031117	.	-	1	Parent=Os03t0270200-01
Chr03	irgsp1_rep	CDS	9029794	9030541	.	-	1	Parent=Os03t0270200-01
Chr03	irgsp1_rep	three_prime_UTR	9029544	9029793	.	-	.	Parent=Os03t0270200-01
Chr03	irgsp1_rep	mRNA	9028771	9035256	.	-	.	ID=Os03t0270200-02;Name=Os03t0270200-02;Locus_id=Os03g0270200;Note=Splicing factor PWI domain containing protein.;Transcript_evidence=AK102826 (DDBJ%2C Best hit);ORF_evidence=Q84JX7 (UniProt);GO=Biological Process: mRNA processing (GO:0006397);InterPro=Splicing factor PWI (IPR002483);NIAS_FLcDNA=J033109C10;Oryzabase=23052;Expression=AK102826;TENOR=Os03t0270200-02;KEGG=Os03t0270200-02
Chr03	irgsp1_rep	five_prime_UTR	9035188	9035256	.	-	.	Parent=Os03t0270200-02
Chr03	irgsp1_rep	CDS	9035167	9035187	.	-	0	Parent=Os03t0270200-02
Chr03	irgsp1_rep	CDS	9034973	9035062	.	-	0	Parent=Os03t0270200-02
Chr03	irgsp1_rep	CDS	9034727	9034849	.	-	0	Parent=Os03t0270200-02
Chr03	irgsp1_rep	CDS	9034005	9034172	.	-	0	Parent=Os03t0270200-02
Chr03	irgsp1_rep	CDS	9033479	9033565	.	-	0	Parent=Os03t0270200-02
Chr03	irgsp1_rep	CDS	9033322	9033393	.	-	0	Parent=Os03t0270200-02
Chr03	irgsp1_rep	three_prime_UTR	9033241	9033321	.	-	.	Parent=Os03t0270200-02
Chr03	irgsp1_rep	three_prime_UTR	9031809	9032543	.	-	.	Parent=Os03t0270200-02
Chr03	irgsp1_rep	three_prime_UTR	9031604	9031717	.	-	.	Parent=Os03t0270200-02
Chr03	irgsp1_rep	three_prime_UTR	9031388	9031525	.	-	.	Parent=Os03t0270200-02
Chr03	irgsp1_rep	three_prime_UTR	9031206	9031286	.	-	.	Parent=Os03t0270200-02
Chr03	irgsp1_rep	three_prime_UTR	9030998	9031117	.	-	.	Parent=Os03t0270200-02
Chr03	irgsp1_rep	three_prime_UTR	9029601	9030541	.	-	.	Parent=Os03t0270200-02
Chr03	irgsp1_rep	three_prime_UTR	9028771	9029113	.	-	.	Parent=Os03t0270200-02
Chr03	irgsp1_rep	mRNA	9029542	9032524	.	-	.	ID=Os03t0270200-03;Name=Os03t0270200-03;Locus_id=Os03g0270200;Note=Conserved hypothetical protein.;Transcript_evidence=AK060809 (DDBJ%2C Best hit);ORF_evidence=Q10NF9 (UniProt);NIAS_FLcDNA=001-033-G06;Oryzabase=23052;TENOR=Os03t0270200-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	9032351	9032524	.	-	.	Parent=Os03t0270200-03
Chr03	irgsp1_rep	CDS	9031809	9032350	.	-	0	Parent=Os03t0270200-03
Chr03	irgsp1_rep	CDS	9031604	9031717	.	-	1	Parent=Os03t0270200-03
Chr03	irgsp1_rep	CDS	9031388	9031525	.	-	1	Parent=Os03t0270200-03
Chr03	irgsp1_rep	CDS	9031206	9031286	.	-	1	Parent=Os03t0270200-03
Chr03	irgsp1_rep	CDS	9030998	9031117	.	-	1	Parent=Os03t0270200-03
Chr03	irgsp1_rep	CDS	9029794	9030541	.	-	1	Parent=Os03t0270200-03
Chr03	irgsp1_rep	three_prime_UTR	9029542	9029793	.	-	.	Parent=Os03t0270200-03
Chr03	irgsp1_rep	mRNA	9031969	9032400	.	+	.	ID=Os03t0270300-00;Name=Os03t0270300-00;Locus_id=Os03g0270300;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001049683.1 (RefSeq);TENOR=Os03t0270300-00;KEGG=Os03t0270300-00
Chr03	irgsp1_rep	CDS	9031969	9032400	.	+	0	Parent=Os03t0270300-00
Chr03	irgsp1_rep	mRNA	9039598	9040733	.	-	.	ID=Os03t0270500-01;Name=Os03t0270500-01;Locus_id=Os03g0270500;CGSNL Gene Symbol=DUF668-4;CGSNL Gene Name=DUF668 FAMILY MEMBER 4;Oryzabase Gene Symbol Synonym(s)=OsDUF668-4;Oryzabase Gene Name Synonym(s)=DUF668 family member 4;Note=Protein of unknown function DUF668 family protein.;Transcript_evidence=AK108185 (DDBJ%2C Best hit);ORF_evidence=Q84JV9 (UniProt);InterPro=Protein of unknown function DUF668 (IPR007700);NIAS_FLcDNA=002-140-B08;Oryzabase=23477;Expression=AK108185;TENOR=Os03t0270500-01;KEGG=Os03t0270500-01
Chr03	irgsp1_rep	five_prime_UTR	9040733	9040733	.	-	.	Parent=Os03t0270500-01
Chr03	irgsp1_rep	CDS	9039872	9040732	.	-	0	Parent=Os03t0270500-01
Chr03	irgsp1_rep	three_prime_UTR	9039598	9039871	.	-	.	Parent=Os03t0270500-01
Chr03	irgsp1_rep	mRNA	9039754	9041273	.	+	.	ID=Os03t0270600-00;Name=Os03t0270600-00;Locus_id=Os03g0270600;Note=CytoChrome c domain domain containing protein.;Transcript_evidence=tplb0021m07 (Wheat FLcDNA);ORF_evidence=longestORF;GO=Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome c domain (IPR009056);TENOR=Os03t0270600-00
Chr03	irgsp1_rep	five_prime_UTR	9039754	9039941	.	+	.	Parent=Os03t0270600-00
Chr03	irgsp1_rep	CDS	9039942	9040883	.	+	0	Parent=Os03t0270600-00
Chr03	irgsp1_rep	three_prime_UTR	9040884	9041273	.	+	.	Parent=Os03t0270600-00
Chr03	irgsp1_rep	mRNA	9047645	9051456	.	+	.	ID=Os03t0270700-01;Name=Os03t0270700-01;Locus_id=Os03g0270700;Oryzabase Gene Symbol Synonym(s)=OsDW1-03g;Note=Conserved hypothetical protein.;Transcript_evidence=AK070218 (DDBJ%2C Best hit),AK099207 (DDBJ%2C Best hit);ORF_evidence=B8AKP7 (UniProt);NIAS_FLcDNA=J023045D22,J013052F02;Oryzabase=21688;TENOR=Os03t0270700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	9047645	9047773	.	+	0	Parent=Os03t0270700-01
Chr03	irgsp1_rep	CDS	9048293	9048541	.	+	0	Parent=Os03t0270700-01
Chr03	irgsp1_rep	three_prime_UTR	9048542	9048542	.	+	.	Parent=Os03t0270700-01
Chr03	irgsp1_rep	three_prime_UTR	9049489	9050692	.	+	.	Parent=Os03t0270700-01
Chr03	irgsp1_rep	three_prime_UTR	9050916	9051456	.	+	.	Parent=Os03t0270700-01
Chr03	irgsp1_rep	mRNA	9049896	9051388	.	+	.	ID=Os03t0270700-02;Name=Os03t0270700-02;Locus_id=Os03g0270700;Oryzabase Gene Symbol Synonym(s)=OsDW1-03g;Note=Hypothetical conserved gene.;Transcript_evidence=AK119531 (DDBJ%2C Best hit);ORF_evidence=Q10NF7 (UniProt);NIAS_FLcDNA=001-203-D11;Oryzabase=21688;Expression=AK119531;TENOR=Os03t0270700-02;KEGG=Os03t0270700-02
Chr03	irgsp1_rep	five_prime_UTR	9049896	9049896	.	+	.	Parent=Os03t0270700-02
Chr03	irgsp1_rep	CDS	9049897	9050692	.	+	0	Parent=Os03t0270700-02
Chr03	irgsp1_rep	CDS	9050916	9051145	.	+	2	Parent=Os03t0270700-02
Chr03	irgsp1_rep	three_prime_UTR	9051146	9051388	.	+	.	Parent=Os03t0270700-02
Chr03	irgsp1_rep	mRNA	9051853	9052532	.	-	.	ID=Os03t0270800-00;Name=Os03t0270800-00;Locus_id=Os03g0270800;Note=Conserved hypothetical protein.;Transcript_evidence=EU953158 (DDBJ);ORF_evidence=NP_001049687.1 (RefSeq);TENOR=Os03t0270800-00;KEGG=Os03t0270800-00
Chr03	irgsp1_rep	five_prime_UTR	9052434	9052532	.	-	.	Parent=Os03t0270800-00
Chr03	irgsp1_rep	CDS	9051855	9052433	.	-	0	Parent=Os03t0270800-00
Chr03	irgsp1_rep	three_prime_UTR	9051853	9051854	.	-	.	Parent=Os03t0270800-00
Chr03	irgsp1_rep	mRNA	9061199	9061833	.	+	.	ID=Os03t0270900-00;Name=Os03t0270900-00;Locus_id=Os03g0270900;Note=Conserved hypothetical protein.;Transcript_evidence=AK064660 (DDBJ%2C Secondary hit);ORF_evidence=B8B3T4 (UniProt);TENOR=Os03t0270900-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	9061199	9061608	.	+	.	Parent=Os03t0270900-00
Chr03	irgsp1_rep	CDS	9061609	9061833	.	+	0	Parent=Os03t0270900-00
Chr03	irgsp1_rep	mRNA	9064856	9068046	.	+	.	ID=Os03t0271100-01;Name=Os03t0271100-01;Locus_id=Os03g0271100;CGSNL Gene Symbol=SIG2B;CGSNL Gene Name=SIGMA FACTOR 2B;Oryzabase Gene Symbol Synonym(s)=OsSIG2B;Oryzabase Gene Name Synonym(s)=Sigma factor SIG2B;Note=Similar to Sigma factor SIG2B.;Transcript_evidence=AK060821 (DDBJ%2C Best hit);ORF_evidence=Q10NF3 (UniProt);GO=Biological Process: transcription initiation%2C DNA-dependent (GO:0006352),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sigma factor activity (GO:0016987);InterPro=RNA polymerase sigma-70 factor (IPR000943),RNA polymerase sigma-70 region 3 (IPR007624),RNA polymerase sigma-70 region 2 (IPR007627),RNA polymerase sigma-70 region 4 (IPR007630),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),RNA polymerase sigma factor%2C region 3/4 (IPR013324),RNA polymerase sigma factor%2C region 2 (IPR013325),RNA polymerase sigma-70 (IPR014284),RNA polymerase sigma factor%2C SigB/SigC/SigD%2C plastid (IPR016262);NIAS_FLcDNA=001-034-B01;Oryzabase=9716;Expression=AK060821;TENOR=Os03t0271100-01;KEGG=Os03t0271100-01
Chr03	irgsp1_rep	five_prime_UTR	9064856	9065097	.	+	.	Parent=Os03t0271100-01
Chr03	irgsp1_rep	CDS	9065098	9065316	.	+	0	Parent=Os03t0271100-01
Chr03	irgsp1_rep	CDS	9065446	9065985	.	+	0	Parent=Os03t0271100-01
Chr03	irgsp1_rep	CDS	9066406	9066636	.	+	0	Parent=Os03t0271100-01
Chr03	irgsp1_rep	CDS	9066723	9066863	.	+	0	Parent=Os03t0271100-01
Chr03	irgsp1_rep	CDS	9067238	9067435	.	+	0	Parent=Os03t0271100-01
Chr03	irgsp1_rep	CDS	9067538	9067831	.	+	0	Parent=Os03t0271100-01
Chr03	irgsp1_rep	three_prime_UTR	9067832	9068046	.	+	.	Parent=Os03t0271100-01
Chr03	irgsp1_rep	mRNA	9064942	9068044	.	+	.	ID=Os03t0271100-02;Name=Os03t0271100-02;Locus_id=Os03g0271100;CGSNL Gene Symbol=SIG2B;CGSNL Gene Name=SIGMA FACTOR 2B;Oryzabase Gene Symbol Synonym(s)=OsSIG2B;Oryzabase Gene Name Synonym(s)=Sigma factor SIG2B;Note=Similar to Sigma factor SIG2B.;Transcript_evidence=AK099036 (DDBJ%2C Best hit);ORF_evidence=Q10NF3 (UniProt);GO=Biological Process: transcription initiation%2C DNA-dependent (GO:0006352),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sigma factor activity (GO:0016987);InterPro=RNA polymerase sigma-70 factor (IPR000943),RNA polymerase sigma-70 region 3 (IPR007624),RNA polymerase sigma-70 region 2 (IPR007627),RNA polymerase sigma-70 region 4 (IPR007630),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),RNA polymerase sigma factor%2C region 3/4 (IPR013324),RNA polymerase sigma factor%2C region 2 (IPR013325),RNA polymerase sigma-70 (IPR014284),RNA polymerase sigma factor%2C SigB/SigC/SigD%2C plastid (IPR016262);NIAS_FLcDNA=J013134F21;Oryzabase=9716;Expression=AK099036;TENOR=Os03t0271100-02;KEGG=Os03t0271100-02
Chr03	irgsp1_rep	five_prime_UTR	9064942	9065097	.	+	.	Parent=Os03t0271100-02
Chr03	irgsp1_rep	CDS	9065098	9065316	.	+	0	Parent=Os03t0271100-02
Chr03	irgsp1_rep	CDS	9065446	9065985	.	+	0	Parent=Os03t0271100-02
Chr03	irgsp1_rep	CDS	9066406	9066636	.	+	0	Parent=Os03t0271100-02
Chr03	irgsp1_rep	CDS	9066723	9066863	.	+	0	Parent=Os03t0271100-02
Chr03	irgsp1_rep	CDS	9067238	9067435	.	+	0	Parent=Os03t0271100-02
Chr03	irgsp1_rep	CDS	9067538	9067831	.	+	0	Parent=Os03t0271100-02
Chr03	irgsp1_rep	three_prime_UTR	9067832	9068044	.	+	.	Parent=Os03t0271100-02
Chr03	irgsp1_rep	mRNA	9065039	9068046	.	+	.	ID=Os03t0271100-03;Name=Os03t0271100-03;Locus_id=Os03g0271100;CGSNL Gene Symbol=SIG2B;CGSNL Gene Name=SIGMA FACTOR 2B;Oryzabase Gene Symbol Synonym(s)=OsSIG2B;Oryzabase Gene Name Synonym(s)=Sigma factor SIG2B;Note=Similar to Sigma factor SIG2B.;Transcript_evidence=AK067693 (DDBJ%2C Best hit);ORF_evidence=NP_001104924.1 (RefSeq);GO=Biological Process: transcription initiation%2C DNA-dependent (GO:0006352),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sigma factor activity (GO:0016987);InterPro=RNA polymerase sigma-70 factor (IPR000943),RNA polymerase sigma-70 region 3 (IPR007624),RNA polymerase sigma-70 region 2 (IPR007627),RNA polymerase sigma-70 region 4 (IPR007630),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),RNA polymerase sigma factor%2C region 3/4 (IPR013324),RNA polymerase sigma factor%2C region 2 (IPR013325),RNA polymerase sigma-70 (IPR014284),RNA polymerase sigma factor%2C SigB/SigC/SigD%2C plastid (IPR016262);NIAS_FLcDNA=J013116E16;Oryzabase=9716;Expression=AK067693;TENOR=Os03t0271100-03;KEGG=Os03t0271100-03
Chr03	irgsp1_rep	five_prime_UTR	9065039	9065097	.	+	.	Parent=Os03t0271100-03
Chr03	irgsp1_rep	CDS	9065098	9065316	.	+	0	Parent=Os03t0271100-03
Chr03	irgsp1_rep	CDS	9065446	9065985	.	+	0	Parent=Os03t0271100-03
Chr03	irgsp1_rep	CDS	9066406	9066636	.	+	0	Parent=Os03t0271100-03
Chr03	irgsp1_rep	CDS	9066723	9066863	.	+	0	Parent=Os03t0271100-03
Chr03	irgsp1_rep	CDS	9067238	9067435	.	+	0	Parent=Os03t0271100-03
Chr03	irgsp1_rep	CDS	9067538	9067831	.	+	0	Parent=Os03t0271100-03
Chr03	irgsp1_rep	three_prime_UTR	9067832	9068046	.	+	.	Parent=Os03t0271100-03
Chr03	irgsp1_rep	mRNA	9068392	9073951	.	+	.	ID=Os03t0271200-01;Name=Os03t0271200-01;Locus_id=Os03g0271200;Note=Similar to Chloroplastic outer envelope membrane protein (OEP75) precursor (Outer membrane protein).;Transcript_evidence=AK120241 (DDBJ%2C Best hit);ORF_evidence=Q84Q83 (UniProt);GO=Cellular Component: outer membrane (GO:0019867);InterPro=Bacterial surface antigen (D15) (IPR000184);NIAS_FLcDNA=J013044F20;Expression=AK120241;TENOR=Os03t0271200-01;KEGG=Os03t0271200-01
Chr03	irgsp1_rep	five_prime_UTR	9068392	9068499	.	+	.	Parent=Os03t0271200-01
Chr03	irgsp1_rep	CDS	9068500	9069684	.	+	0	Parent=Os03t0271200-01
Chr03	irgsp1_rep	CDS	9070105	9070326	.	+	0	Parent=Os03t0271200-01
Chr03	irgsp1_rep	CDS	9070442	9070549	.	+	0	Parent=Os03t0271200-01
Chr03	irgsp1_rep	CDS	9071502	9071696	.	+	0	Parent=Os03t0271200-01
Chr03	irgsp1_rep	CDS	9071799	9072047	.	+	0	Parent=Os03t0271200-01
Chr03	irgsp1_rep	CDS	9072419	9072673	.	+	0	Parent=Os03t0271200-01
Chr03	irgsp1_rep	CDS	9073205	9073444	.	+	0	Parent=Os03t0271200-01
Chr03	irgsp1_rep	three_prime_UTR	9073445	9073951	.	+	.	Parent=Os03t0271200-01
Chr03	irgsp1_rep	mRNA	9070244	9073875	.	+	.	ID=Os03t0271200-02;Name=Os03t0271200-02;Locus_id=Os03g0271200;Note=Similar to Protein TOC75%2C chloroplastic.;Transcript_evidence=AK062000 (DDBJ%2C Best hit);ORF_evidence=Q84Q83 (UniProt);GO=Cellular Component: outer membrane (GO:0019867);InterPro=Bacterial surface antigen (D15) (IPR000184);NIAS_FLcDNA=001-043-D04;Expression=AK062000;TENOR=Os03t0271200-02;KEGG=Os03t0271200-02
Chr03	irgsp1_rep	five_prime_UTR	9070244	9070245	.	+	.	Parent=Os03t0271200-02
Chr03	irgsp1_rep	CDS	9070246	9070326	.	+	0	Parent=Os03t0271200-02
Chr03	irgsp1_rep	CDS	9070442	9070549	.	+	0	Parent=Os03t0271200-02
Chr03	irgsp1_rep	CDS	9071502	9071696	.	+	0	Parent=Os03t0271200-02
Chr03	irgsp1_rep	CDS	9071799	9072047	.	+	0	Parent=Os03t0271200-02
Chr03	irgsp1_rep	CDS	9072419	9072673	.	+	0	Parent=Os03t0271200-02
Chr03	irgsp1_rep	CDS	9073205	9073444	.	+	0	Parent=Os03t0271200-02
Chr03	irgsp1_rep	three_prime_UTR	9073445	9073875	.	+	.	Parent=Os03t0271200-02
Chr03	irgsp1_rep	mRNA	9074313	9076182	.	+	.	ID=Os03t0271300-01;Name=Os03t0271300-01;Locus_id=Os03g0271300;Note=Similar to Pentatricopeptide repeat protein PPR868-14.;Transcript_evidence=AK105094 (DDBJ%2C Best hit);ORF_evidence=B6TNQ6 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-100-A08;TENOR=Os03t0271300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	9074313	9074432	.	+	.	Parent=Os03t0271300-01
Chr03	irgsp1_rep	CDS	9074433	9075842	.	+	0	Parent=Os03t0271300-01
Chr03	irgsp1_rep	three_prime_UTR	9075843	9076182	.	+	.	Parent=Os03t0271300-01
Chr03	irgsp1_rep	mRNA	9074669	9075729	.	-	.	ID=Os03t0271350-00;Name=Os03t0271350-00;Locus_id=Os03g0271350;Note=Hypothetical protein.;Transcript_evidence=BT085496 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0271350-00
Chr03	irgsp1_rep	five_prime_UTR	9075645	9075729	.	-	.	Parent=Os03t0271350-00
Chr03	irgsp1_rep	CDS	9075296	9075644	.	-	0	Parent=Os03t0271350-00
Chr03	irgsp1_rep	CDS	9074669	9074782	.	-	2	Parent=Os03t0271350-00
Chr03	irgsp1_rep	mRNA	9076047	9079383	.	-	.	ID=Os03t0271400-01;Name=Os03t0271400-01;Locus_id=Os03g0271400;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK066433 (DDBJ%2C Best hit);ORF_evidence=XP_002882614.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013059F23;Expression=AK066433;TENOR=Os03t0271400-01;KEGG=Os03t0271400-01
Chr03	irgsp1_rep	five_prime_UTR	9079256	9079383	.	-	.	Parent=Os03t0271400-01
Chr03	irgsp1_rep	CDS	9079170	9079255	.	-	0	Parent=Os03t0271400-01
Chr03	irgsp1_rep	CDS	9078860	9079005	.	-	1	Parent=Os03t0271400-01
Chr03	irgsp1_rep	CDS	9078244	9078294	.	-	2	Parent=Os03t0271400-01
Chr03	irgsp1_rep	CDS	9077213	9077434	.	-	2	Parent=Os03t0271400-01
Chr03	irgsp1_rep	CDS	9077019	9077121	.	-	2	Parent=Os03t0271400-01
Chr03	irgsp1_rep	CDS	9076344	9076890	.	-	1	Parent=Os03t0271400-01
Chr03	irgsp1_rep	three_prime_UTR	9076047	9076343	.	-	.	Parent=Os03t0271400-01
Chr03	irgsp1_rep	mRNA	9079602	9080939	.	+	.	ID=Os03t0271500-01;Name=Os03t0271500-01;Locus_id=Os03g0271500;Note=Conserved hypothetical protein.;Transcript_evidence=AK068546 (DDBJ%2C Best hit);ORF_evidence=B8AKQ3 (UniProt);NIAS_FLcDNA=J013157P04;Expression=AK068546;TENOR=Os03t0271500-01;KEGG=Os03t0271500-01
Chr03	irgsp1_rep	five_prime_UTR	9079602	9079674	.	+	.	Parent=Os03t0271500-01
Chr03	irgsp1_rep	CDS	9079675	9079992	.	+	0	Parent=Os03t0271500-01
Chr03	irgsp1_rep	CDS	9080101	9080235	.	+	0	Parent=Os03t0271500-01
Chr03	irgsp1_rep	three_prime_UTR	9080236	9080249	.	+	.	Parent=Os03t0271500-01
Chr03	irgsp1_rep	three_prime_UTR	9080685	9080939	.	+	.	Parent=Os03t0271500-01
Chr03	irgsp1_rep	mRNA	9079621	9081544	.	+	.	ID=Os03t0271500-02;Name=Os03t0271500-02;Locus_id=Os03g0271500;Note=Conserved hypothetical protein.;Transcript_evidence=AK109239 (DDBJ%2C Best hit);ORF_evidence=B8AKQ3 (UniProt);NIAS_FLcDNA=002-156-F11;Expression=AK109239;TENOR=Os03t0271500-02;KEGG=Os03t0271500-02
Chr03	irgsp1_rep	five_prime_UTR	9079621	9079674	.	+	.	Parent=Os03t0271500-02
Chr03	irgsp1_rep	CDS	9079675	9079992	.	+	0	Parent=Os03t0271500-02
Chr03	irgsp1_rep	CDS	9080101	9080235	.	+	0	Parent=Os03t0271500-02
Chr03	irgsp1_rep	three_prime_UTR	9080236	9080277	.	+	.	Parent=Os03t0271500-02
Chr03	irgsp1_rep	three_prime_UTR	9081037	9081544	.	+	.	Parent=Os03t0271500-02
Chr03	irgsp1_rep	mRNA	9084480	9085918	.	+	.	ID=Os03t0271600-01;Name=Os03t0271600-01;Locus_id=Os03g0271600;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK099268 (DDBJ%2C Best hit),AK067221 (DDBJ%2C Best hit);ORF_evidence=B6UHH0 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Domain of unknown function DUF1117 (IPR010543),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J023018C07,J013097C11;Expression=AK099268;TENOR=Os03t0271600-01;KEGG=Os03t0271600-01 (EC:6.3.2.19)
Chr03	irgsp1_rep	five_prime_UTR	9084480	9084709	.	+	.	Parent=Os03t0271600-01
Chr03	irgsp1_rep	CDS	9084710	9085549	.	+	0	Parent=Os03t0271600-01
Chr03	irgsp1_rep	three_prime_UTR	9085550	9085918	.	+	.	Parent=Os03t0271600-01
Chr03	irgsp1_rep	mRNA	9096263	9098273	.	-	.	ID=Os03t0271800-01;Name=Os03t0271800-01;Locus_id=Os03g0271800;Note=Hypothetical protein.;Transcript_evidence=AK102985 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033116C01;Expression=AK102985;TENOR=Os03t0271800-01;KEGG=Os03t0271800-01
Chr03	irgsp1_rep	five_prime_UTR	9098187	9098273	.	-	.	Parent=Os03t0271800-01
Chr03	irgsp1_rep	CDS	9097758	9098186	.	-	0	Parent=Os03t0271800-01
Chr03	irgsp1_rep	three_prime_UTR	9096263	9097757	.	-	.	Parent=Os03t0271800-01
Chr03	irgsp1_rep	mRNA	9096403	9098366	.	+	.	ID=Os03t0271900-01;Name=Os03t0271900-01;Locus_id=Os03g0271900;Note=Peptidase aspartic%2C catalytic domain containing protein.;Transcript_evidence=AK101206 (DDBJ%2C Best hit);ORF_evidence=NP_001152414.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J033030P16;Expression=AK101206;TENOR=Os03t0271900-01;KEGG=Os03t0271900-01
Chr03	irgsp1_rep	five_prime_UTR	9096403	9096811	.	+	.	Parent=Os03t0271900-01
Chr03	irgsp1_rep	CDS	9096812	9098155	.	+	0	Parent=Os03t0271900-01
Chr03	irgsp1_rep	three_prime_UTR	9098156	9098366	.	+	.	Parent=Os03t0271900-01
Chr03	irgsp1_rep	mRNA	9096436	9098423	.	+	.	ID=Os03t0271900-02;Name=Os03t0271900-02;Locus_id=Os03g0271900;Note=Peptidase aspartic%2C catalytic domain containing protein.;Transcript_evidence=AK103225 (DDBJ%2C Best hit);ORF_evidence=NP_001152414.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J033123A19;Expression=AK103225;TENOR=Os03t0271900-02;KEGG=Os03t0271900-02
Chr03	irgsp1_rep	five_prime_UTR	9096436	9096811	.	+	.	Parent=Os03t0271900-02
Chr03	irgsp1_rep	CDS	9096812	9098155	.	+	0	Parent=Os03t0271900-02
Chr03	irgsp1_rep	three_prime_UTR	9098156	9098423	.	+	.	Parent=Os03t0271900-02
Chr03	irgsp1_rep	mRNA	9096696	9098430	.	+	.	ID=Os03t0271900-03;Name=Os03t0271900-03;Locus_id=Os03g0271900;Note=Peptidase aspartic%2C catalytic domain containing protein.;Transcript_evidence=AK105994 (DDBJ%2C Best hit);ORF_evidence=NP_001152414.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=001-205-H04;Expression=AK105994;TENOR=Os03t0271900-03;KEGG=Os03t0271900-03
Chr03	irgsp1_rep	five_prime_UTR	9096696	9096811	.	+	.	Parent=Os03t0271900-03
Chr03	irgsp1_rep	CDS	9096812	9098155	.	+	0	Parent=Os03t0271900-03
Chr03	irgsp1_rep	three_prime_UTR	9098156	9098430	.	+	.	Parent=Os03t0271900-03
Chr03	irgsp1_rep	mRNA	9132796	9136377	.	+	.	ID=Os03t0272300-01;Name=Os03t0272300-01;Locus_id=Os03g0272300;Oryzabase Gene Symbol Synonym(s)=OsSDIR1%2C SDIR1;Oryzabase Gene Name Synonym(s)=SALT-AND DROUGHT-INDUCED RING FINGER 1;Note=Similar to protein binding protein.;Transcript_evidence=AK071865 (DDBJ%2C Best hit);ORF_evidence=Q10NE0;GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J023124E09;Manual Curation=September 10%2C 2020;Oryzabase=9293;TENOR=Os03t0272300-01
Chr03	irgsp1_rep	five_prime_UTR	9132796	9132901	.	+	.	Parent=Os03t0272300-01
Chr03	irgsp1_rep	five_prime_UTR	9133141	9133351	.	+	.	Parent=Os03t0272300-01
Chr03	irgsp1_rep	five_prime_UTR	9133432	9133486	.	+	.	Parent=Os03t0272300-01
Chr03	irgsp1_rep	five_prime_UTR	9133581	9133585	.	+	.	Parent=Os03t0272300-01
Chr03	irgsp1_rep	CDS	9133586	9133633	.	+	0	Parent=Os03t0272300-01
Chr03	irgsp1_rep	CDS	9133726	9133954	.	+	0	Parent=Os03t0272300-01
Chr03	irgsp1_rep	CDS	9134043	9134178	.	+	2	Parent=Os03t0272300-01
Chr03	irgsp1_rep	CDS	9134342	9134390	.	+	1	Parent=Os03t0272300-01
Chr03	irgsp1_rep	CDS	9135017	9135142	.	+	0	Parent=Os03t0272300-01
Chr03	irgsp1_rep	CDS	9135897	9136010	.	+	0	Parent=Os03t0272300-01
Chr03	irgsp1_rep	three_prime_UTR	9136011	9136377	.	+	.	Parent=Os03t0272300-01
Chr03	irgsp1_rep	mRNA	9133117	9136698	.	+	.	ID=Os03t0272300-02;Name=Os03t0272300-02;Locus_id=Os03g0272300;RAP-DB Gene Symbol Synonym(s)=OsSDIR1;RAP-DB Gene Name Synonym(s)=SALT-AND DROUGHT-INDUCED RING FINGER 1;Oryzabase Gene Symbol Synonym(s)=OsSDIR1%2C SDIR1;Oryzabase Gene Name Synonym(s)=SALT-AND DROUGHT-INDUCED RING FINGER 1;Note=RING-finger containing E3 ubiquitin ligase%2C Ortholog of Arabidopsis SDIR1%2C Drought tolerance;Transcript_evidence=AK060183;ORF_evidence=Q10NE1;InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841);NIAS_FLcDNA=001-001-C07;Manual Curation=September 10%2C 2020;Literature_PMID=21499841;Oryzabase=9293;Expression=AK060183;TENOR=Os03t0272300-02;Subcellular location=plasma membrane (GO:0005886), intracellular membrane (GO:0031090), nuclear membrane (GO:0031965)
Chr03	irgsp1_rep	five_prime_UTR	9133117	9133250	.	+	.	Parent=Os03t0272300-02
Chr03	irgsp1_rep	CDS	9133251	9133331	.	+	0	Parent=Os03t0272300-02
Chr03	irgsp1_rep	CDS	9133432	9133486	.	+	0	Parent=Os03t0272300-02
Chr03	irgsp1_rep	CDS	9133581	9133633	.	+	2	Parent=Os03t0272300-02
Chr03	irgsp1_rep	CDS	9133726	9133954	.	+	0	Parent=Os03t0272300-02
Chr03	irgsp1_rep	CDS	9134043	9134178	.	+	2	Parent=Os03t0272300-02
Chr03	irgsp1_rep	CDS	9134342	9134390	.	+	1	Parent=Os03t0272300-02
Chr03	irgsp1_rep	CDS	9135017	9135142	.	+	0	Parent=Os03t0272300-02
Chr03	irgsp1_rep	CDS	9135897	9136010	.	+	0	Parent=Os03t0272300-02
Chr03	irgsp1_rep	three_prime_UTR	9136011	9136698	.	+	.	Parent=Os03t0272300-02
Chr03	irgsp1_rep	mRNA	9138612	9143528	.	+	.	ID=Os03t0272400-01;Name=Os03t0272400-01;Locus_id=Os03g0272400;Note=Conserved hypothetical protein.;Transcript_evidence=AK070454 (DDBJ%2C Best hit);ORF_evidence=B8AKR1 (UniProt);NIAS_FLcDNA=J023050K07;Expression=AK070454;TENOR=Os03t0272400-01;KEGG=Os03t0272400-01
Chr03	irgsp1_rep	five_prime_UTR	9138612	9138680	.	+	.	Parent=Os03t0272400-01
Chr03	irgsp1_rep	CDS	9138681	9138787	.	+	0	Parent=Os03t0272400-01
Chr03	irgsp1_rep	CDS	9142520	9143145	.	+	1	Parent=Os03t0272400-01
Chr03	irgsp1_rep	CDS	9143252	9143316	.	+	2	Parent=Os03t0272400-01
Chr03	irgsp1_rep	three_prime_UTR	9143317	9143528	.	+	.	Parent=Os03t0272400-01
Chr03	irgsp1_rep	mRNA	9156318	9156656	.	-	.	ID=Os03t0272650-00;Name=Os03t0272650-00;Locus_id=Os03g0272650;Note=Non-protein coding transcript.;Transcript_evidence=CT835210 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os03t0272650-00
Chr03	irgsp1_rep	exon	9156318	9156656	.	-	.	Parent=Os03t0272650-00
Chr03	irgsp1_rep	mRNA	9157102	9157955	.	-	.	ID=Os03t0272900-02;Name=Os03t0272900-02;Locus_id=Os03g0272900;Note=DVL family protein.;Transcript_evidence=AK066807 (DDBJ%2C Best hit),AK063186 (DDBJ%2C Best hit);ORF_evidence=A2XF19 (UniProt);NIAS_FLcDNA=J013079P07,001-112-B04;Expression=AK066807;TENOR=Os03t0272900-02;KEGG=Os03t0272900-02
Chr03	irgsp1_rep	five_prime_UTR	9157886	9157955	.	-	.	Parent=Os03t0272900-02
Chr03	irgsp1_rep	CDS	9157589	9157885	.	-	0	Parent=Os03t0272900-02
Chr03	irgsp1_rep	three_prime_UTR	9157102	9157588	.	-	.	Parent=Os03t0272900-02
Chr03	irgsp1_rep	mRNA	9167619	9170326	.	-	.	ID=Os03t0273200-01;Name=Os03t0273200-01;Locus_id=Os03g0273200;CGSNL Gene Symbol=LAC11;CGSNL Gene Name=LACCASE 11;Oryzabase Gene Symbol Synonym(s)=Lac%2C OsLAC11%2C LAC10%2C OsLAC10;Oryzabase Gene Name Synonym(s)=lactase%2C laccase 11%2C laccase-10;Note=Similar to Laccase (EC 1.10.3.2).;Transcript_evidence=AK072397 (DDBJ%2C Best hit);ORF_evidence=Q10ND7 (UniProt);GO=Biological Process: lignin catabolic process (GO:0046274),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: apoplast (GO:0048046),Molecular Function: copper ion binding (GO:0005507),Molecular Function: laccase activity (GO:0008471),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Multicopper oxidase%2C type 1 (IPR001117),Multicopper oxidase%2C copper-binding site (IPR002355),Cupredoxin (IPR008972),Multicopper oxidase%2C type 2 (IPR011706),Multicopper oxidase%2C type 3 (IPR011707),Laccase (IPR017761);NIAS_FLcDNA=J023078P12;Oryzabase=16698;Expression=AK072397;TENOR=Os03t0273200-01;KEGG=Os03t0273200-01 (EC:1.10.3.2)
Chr03	irgsp1_rep	five_prime_UTR	9170241	9170326	.	-	.	Parent=Os03t0273200-01
Chr03	irgsp1_rep	CDS	9170130	9170240	.	-	0	Parent=Os03t0273200-01
Chr03	irgsp1_rep	CDS	9169880	9170031	.	-	0	Parent=Os03t0273200-01
Chr03	irgsp1_rep	CDS	9169517	9169761	.	-	1	Parent=Os03t0273200-01
Chr03	irgsp1_rep	CDS	9169273	9169401	.	-	2	Parent=Os03t0273200-01
Chr03	irgsp1_rep	CDS	9168221	9169189	.	-	2	Parent=Os03t0273200-01
Chr03	irgsp1_rep	CDS	9168001	9168131	.	-	2	Parent=Os03t0273200-01
Chr03	irgsp1_rep	three_prime_UTR	9167619	9168000	.	-	.	Parent=Os03t0273200-01
Chr03	irgsp1_rep	mRNA	9167743	9170251	.	-	.	ID=Os03t0273200-02;Name=Os03t0273200-02;Locus_id=Os03g0273200;CGSNL Gene Symbol=LAC11;CGSNL Gene Name=LACCASE 11;Oryzabase Gene Symbol Synonym(s)=Lac%2C OsLAC11%2C LAC10%2C OsLAC10;Oryzabase Gene Name Synonym(s)=lactase%2C laccase 11%2C laccase-10;Note=Similar to Laccase (EC 1.10.3.2).;Transcript_evidence=AK060579 (DDBJ%2C Best hit);ORF_evidence=Q10ND7 (UniProt);GO=Biological Process: lignin catabolic process (GO:0046274),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: apoplast (GO:0048046),Molecular Function: copper ion binding (GO:0005507),Molecular Function: laccase activity (GO:0008471),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Multicopper oxidase%2C type 1 (IPR001117),Multicopper oxidase%2C copper-binding site (IPR002355),Cupredoxin (IPR008972),Multicopper oxidase%2C type 2 (IPR011706),Multicopper oxidase%2C type 3 (IPR011707),Laccase (IPR017761);NIAS_FLcDNA=001-023-F09;Oryzabase=16698;Expression=AK060579;TENOR=Os03t0273200-02;KEGG=Os03t0273200-02 (EC:1.10.3.2)
Chr03	irgsp1_rep	five_prime_UTR	9170241	9170251	.	-	.	Parent=Os03t0273200-02
Chr03	irgsp1_rep	CDS	9170130	9170240	.	-	0	Parent=Os03t0273200-02
Chr03	irgsp1_rep	CDS	9169880	9170031	.	-	0	Parent=Os03t0273200-02
Chr03	irgsp1_rep	CDS	9169517	9169761	.	-	1	Parent=Os03t0273200-02
Chr03	irgsp1_rep	CDS	9169273	9169401	.	-	2	Parent=Os03t0273200-02
Chr03	irgsp1_rep	CDS	9168221	9169189	.	-	2	Parent=Os03t0273200-02
Chr03	irgsp1_rep	CDS	9168001	9168131	.	-	2	Parent=Os03t0273200-02
Chr03	irgsp1_rep	three_prime_UTR	9167743	9168000	.	-	.	Parent=Os03t0273200-02
Chr03	irgsp1_rep	mRNA	9202541	9204642	.	+	.	ID=Os03t0273800-01;Name=Os03t0273800-01;Locus_id=Os03g0273800;Note=HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 domain containing protein.;Transcript_evidence=AK067356 (DDBJ%2C Best hit),AK059223 (DDBJ%2C Best hit),AK100173 (DDBJ%2C Best hit);ORF_evidence=NP_001150070.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity (GO:0016787);InterPro=Haloacid dehalogenase-like hydrolase (IPR005834),HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 (IPR006402),Pyrimidine 5-nucleotidase (IPR010237),HAD-like domain (IPR023214);NIAS_FLcDNA=J013103J23,001-024-D05,J023026N03;Expression=AK067356;TENOR=Os03t0273800-01;KEGG=Os03t0273800-01
Chr03	irgsp1_rep	five_prime_UTR	9202541	9202674	.	+	.	Parent=Os03t0273800-01
Chr03	irgsp1_rep	five_prime_UTR	9202873	9202896	.	+	.	Parent=Os03t0273800-01
Chr03	irgsp1_rep	CDS	9202897	9202957	.	+	0	Parent=Os03t0273800-01
Chr03	irgsp1_rep	CDS	9203084	9203149	.	+	2	Parent=Os03t0273800-01
Chr03	irgsp1_rep	CDS	9203243	9203340	.	+	2	Parent=Os03t0273800-01
Chr03	irgsp1_rep	CDS	9203449	9203486	.	+	0	Parent=Os03t0273800-01
Chr03	irgsp1_rep	CDS	9203573	9203660	.	+	1	Parent=Os03t0273800-01
Chr03	irgsp1_rep	CDS	9203748	9204023	.	+	0	Parent=Os03t0273800-01
Chr03	irgsp1_rep	CDS	9204126	9204350	.	+	0	Parent=Os03t0273800-01
Chr03	irgsp1_rep	three_prime_UTR	9204351	9204642	.	+	.	Parent=Os03t0273800-01
Chr03	irgsp1_rep	mRNA	9218819	9224101	.	+	.	ID=Os03t0274000-01;Name=Os03t0274000-01;Locus_id=Os03g0274000;Note=Oxysterol-binding protein family protein.;Transcript_evidence=AK060769 (DDBJ%2C Best hit);ORF_evidence=B6U9K5 (UniProt);InterPro=Oxysterol-binding protein (IPR000648),Oxysterol-binding protein%2C conserved site (IPR018494);NIAS_FLcDNA=001-033-B01;Expression=AK060769;TENOR=Os03t0274000-01;KEGG=Os03t0274000-01
Chr03	irgsp1_rep	five_prime_UTR	9218819	9219108	.	+	.	Parent=Os03t0274000-01
Chr03	irgsp1_rep	CDS	9219109	9219224	.	+	0	Parent=Os03t0274000-01
Chr03	irgsp1_rep	CDS	9220005	9220098	.	+	1	Parent=Os03t0274000-01
Chr03	irgsp1_rep	CDS	9221495	9221611	.	+	0	Parent=Os03t0274000-01
Chr03	irgsp1_rep	CDS	9222081	9222153	.	+	0	Parent=Os03t0274000-01
Chr03	irgsp1_rep	CDS	9222229	9222347	.	+	2	Parent=Os03t0274000-01
Chr03	irgsp1_rep	CDS	9222463	9222584	.	+	0	Parent=Os03t0274000-01
Chr03	irgsp1_rep	CDS	9222671	9222847	.	+	1	Parent=Os03t0274000-01
Chr03	irgsp1_rep	CDS	9223083	9223227	.	+	1	Parent=Os03t0274000-01
Chr03	irgsp1_rep	CDS	9223352	9223530	.	+	0	Parent=Os03t0274000-01
Chr03	irgsp1_rep	CDS	9223636	9223885	.	+	1	Parent=Os03t0274000-01
Chr03	irgsp1_rep	three_prime_UTR	9223886	9224101	.	+	.	Parent=Os03t0274000-01
Chr03	irgsp1_rep	mRNA	9222817	9224101	.	+	.	ID=Os03t0274000-02;Name=Os03t0274000-02;Locus_id=Os03g0274000;Note=Similar to oxysterol-binding protein.;Transcript_evidence=AK119251 (DDBJ%2C Best hit);ORF_evidence=B6U9K5 (UniProt);InterPro=Oxysterol-binding protein (IPR000648);NIAS_FLcDNA=001-122-D09;Expression=AK119251;TENOR=Os03t0274000-02;KEGG=Os03t0274000-02
Chr03	irgsp1_rep	five_prime_UTR	9222817	9222818	.	+	.	Parent=Os03t0274000-02
Chr03	irgsp1_rep	CDS	9222819	9222847	.	+	0	Parent=Os03t0274000-02
Chr03	irgsp1_rep	CDS	9223083	9223227	.	+	1	Parent=Os03t0274000-02
Chr03	irgsp1_rep	CDS	9223352	9223530	.	+	0	Parent=Os03t0274000-02
Chr03	irgsp1_rep	CDS	9223636	9223885	.	+	1	Parent=Os03t0274000-02
Chr03	irgsp1_rep	three_prime_UTR	9223886	9224101	.	+	.	Parent=Os03t0274000-02
Chr03	irgsp1_rep	mRNA	9247336	9252590	.	+	.	ID=Os03t0274300-01;Name=Os03t0274300-01;Locus_id=Os03g0274300;Note=Similar to Initiator-binding protein.;Transcript_evidence=AK243267 (DDBJ%2C Best hit);ORF_evidence=C0PH41 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930),Ubiquitin supergroup (IPR019955);NIAS_FLcDNA=J100049F09;TENOR=Os03t0274300-01;KEGG=Os03t0274300-01
Chr03	irgsp1_rep	five_prime_UTR	9247336	9247561	.	+	.	Parent=Os03t0274300-01
Chr03	irgsp1_rep	five_prime_UTR	9248500	9248597	.	+	.	Parent=Os03t0274300-01
Chr03	irgsp1_rep	CDS	9248598	9248687	.	+	0	Parent=Os03t0274300-01
Chr03	irgsp1_rep	CDS	9248792	9249650	.	+	0	Parent=Os03t0274300-01
Chr03	irgsp1_rep	CDS	9249765	9249944	.	+	2	Parent=Os03t0274300-01
Chr03	irgsp1_rep	CDS	9250027	9250086	.	+	2	Parent=Os03t0274300-01
Chr03	irgsp1_rep	CDS	9250178	9250257	.	+	2	Parent=Os03t0274300-01
Chr03	irgsp1_rep	CDS	9250380	9250624	.	+	0	Parent=Os03t0274300-01
Chr03	irgsp1_rep	CDS	9250709	9251032	.	+	1	Parent=Os03t0274300-01
Chr03	irgsp1_rep	CDS	9251105	9251168	.	+	1	Parent=Os03t0274300-01
Chr03	irgsp1_rep	CDS	9251862	9252038	.	+	0	Parent=Os03t0274300-01
Chr03	irgsp1_rep	three_prime_UTR	9252039	9252590	.	+	.	Parent=Os03t0274300-01
Chr03	irgsp1_rep	mRNA	9259812	9260747	.	+	.	ID=Os03t0274400-01;Name=Os03t0274400-01;Locus_id=Os03g0274400;Note=Similar to GRF zinc finger family protein%2C expressed.;Transcript_evidence=AK242971 (DDBJ%2C Best hit);ORF_evidence=Q7XDU8 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C GRF-type (IPR010666);NIAS_FLcDNA=J090091H17;TENOR=Os03t0274400-01;KEGG=Os03t0274400-01
Chr03	irgsp1_rep	five_prime_UTR	9259812	9260031	.	+	.	Parent=Os03t0274400-01
Chr03	irgsp1_rep	CDS	9260032	9260181	.	+	0	Parent=Os03t0274400-01
Chr03	irgsp1_rep	CDS	9260269	9260325	.	+	0	Parent=Os03t0274400-01
Chr03	irgsp1_rep	three_prime_UTR	9260326	9260747	.	+	.	Parent=Os03t0274400-01
Chr03	irgsp1_rep	mRNA	9266080	9270202	.	+	.	ID=Os03t0274700-01;Name=Os03t0274700-01;Locus_id=Os03g0274700;Note=Conserved hypothetical protein.;Transcript_evidence=AK071533 (DDBJ%2C Best hit);ORF_evidence=B8AL27 (UniProt);NIAS_FLcDNA=J023104C07;TENOR=Os03t0274700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	9266080	9266080	.	+	.	Parent=Os03t0274700-01
Chr03	irgsp1_rep	CDS	9266081	9266140	.	+	0	Parent=Os03t0274700-01
Chr03	irgsp1_rep	CDS	9266827	9267079	.	+	0	Parent=Os03t0274700-01
Chr03	irgsp1_rep	CDS	9267766	9268013	.	+	2	Parent=Os03t0274700-01
Chr03	irgsp1_rep	CDS	9269459	9269866	.	+	0	Parent=Os03t0274700-01
Chr03	irgsp1_rep	three_prime_UTR	9269867	9270202	.	+	.	Parent=Os03t0274700-01
Chr03	irgsp1_rep	mRNA	9270240	9273393	.	-	.	ID=Os03t0274800-01;Name=Os03t0274800-01;Locus_id=Os03g0274800;RAP-DB Gene Symbol Synonym(s)=OsRLCK107;RAP-DB Gene Name Synonym(s)=Receptor-Like Cytoplasmic Kinase 107;CGSNL Gene Symbol=RLCK107;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 107;Oryzabase Gene Symbol Synonym(s)=OsRLCK107;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 107;Note=Receptor-like cytoplasmic kinase%2C Positive regulation of chitin- and PGN induced immunity%2C Positive regulation of seed set rate;Transcript_evidence=AK102905;ORF_evidence=Q10NC1;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),Protein kinase domain (IPR000719),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J033113F11;Manual Curation=July 20%2C 2020;Literature_PMID=28220451,26679011;Oryzabase=18815;Expression=AK102905;TENOR=Os03t0274800-01;KEGG=Os03t0274800-01;Subcellular location=plasma membrane (GO:0005886)
Chr03	irgsp1_rep	five_prime_UTR	9273200	9273393	.	-	.	Parent=Os03t0274800-01
Chr03	irgsp1_rep	CDS	9273130	9273199	.	-	0	Parent=Os03t0274800-01
Chr03	irgsp1_rep	CDS	9272362	9272690	.	-	2	Parent=Os03t0274800-01
Chr03	irgsp1_rep	CDS	9272099	9272234	.	-	0	Parent=Os03t0274800-01
Chr03	irgsp1_rep	CDS	9271855	9271997	.	-	2	Parent=Os03t0274800-01
Chr03	irgsp1_rep	CDS	9271636	9271759	.	-	0	Parent=Os03t0274800-01
Chr03	irgsp1_rep	CDS	9270529	9270851	.	-	2	Parent=Os03t0274800-01
Chr03	irgsp1_rep	three_prime_UTR	9270240	9270528	.	-	.	Parent=Os03t0274800-01
Chr03	irgsp1_rep	mRNA	9270543	9272556	.	+	.	ID=Os03t0274950-00;Name=Os03t0274950-00;Locus_id=Os03g0274950;Note=Hypothetical protein.;Transcript_evidence=tplb0027d05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0274950-00
Chr03	irgsp1_rep	five_prime_UTR	9270543	9270862	.	+	.	Parent=Os03t0274950-00
Chr03	irgsp1_rep	five_prime_UTR	9271646	9271763	.	+	.	Parent=Os03t0274950-00
Chr03	irgsp1_rep	five_prime_UTR	9271864	9271985	.	+	.	Parent=Os03t0274950-00
Chr03	irgsp1_rep	five_prime_UTR	9272097	9272181	.	+	.	Parent=Os03t0274950-00
Chr03	irgsp1_rep	CDS	9272182	9272219	.	+	0	Parent=Os03t0274950-00
Chr03	irgsp1_rep	CDS	9272343	9272556	.	+	1	Parent=Os03t0274950-00
Chr03	irgsp1_rep	mRNA	9285328	9288541	.	+	.	ID=Os03t0275100-01;Name=Os03t0275100-01;Locus_id=Os03g0275100;Oryzabase Gene Symbol Synonym(s)=OsPP2C31%2C PP2C31%2C OsPP49;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C31%2C protein phosphatase 2C 31%2C protein phosphatase 49;Note=Similar to TA11 protein (Fragment).;Transcript_evidence=AK107380 (DDBJ%2C Best hit);ORF_evidence=Q10NB9 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=002-127-C01;Oryzabase=17906;Expression=AK107380;TENOR=Os03t0275100-01;KEGG=Os03t0275100-01
Chr03	irgsp1_rep	five_prime_UTR	9285328	9285527	.	+	.	Parent=Os03t0275100-01
Chr03	irgsp1_rep	CDS	9285528	9286928	.	+	0	Parent=Os03t0275100-01
Chr03	irgsp1_rep	CDS	9287128	9287241	.	+	0	Parent=Os03t0275100-01
Chr03	irgsp1_rep	CDS	9287869	9288133	.	+	0	Parent=Os03t0275100-01
Chr03	irgsp1_rep	CDS	9288240	9288355	.	+	2	Parent=Os03t0275100-01
Chr03	irgsp1_rep	three_prime_UTR	9288356	9288541	.	+	.	Parent=Os03t0275100-01
Chr03	irgsp1_rep	mRNA	9285413	9288857	.	+	.	ID=Os03t0275100-02;Name=Os03t0275100-02;Locus_id=Os03g0275100;Oryzabase Gene Symbol Synonym(s)=OsPP2C31%2C PP2C31%2C OsPP49;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C31%2C protein phosphatase 2C 31%2C protein phosphatase 49;Note=Similar to TA11 protein (Fragment).;Transcript_evidence=AK107250 (DDBJ%2C Best hit);ORF_evidence=Q10NB9 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=002-125-G02;Oryzabase=17906;Expression=AK107250;TENOR=Os03t0275100-02;KEGG=Os03t0275100-02
Chr03	irgsp1_rep	five_prime_UTR	9285413	9285527	.	+	.	Parent=Os03t0275100-02
Chr03	irgsp1_rep	CDS	9285528	9286928	.	+	0	Parent=Os03t0275100-02
Chr03	irgsp1_rep	CDS	9287128	9287241	.	+	0	Parent=Os03t0275100-02
Chr03	irgsp1_rep	CDS	9287869	9288133	.	+	0	Parent=Os03t0275100-02
Chr03	irgsp1_rep	CDS	9288240	9288355	.	+	2	Parent=Os03t0275100-02
Chr03	irgsp1_rep	three_prime_UTR	9288356	9288857	.	+	.	Parent=Os03t0275100-02
Chr03	irgsp1_rep	mRNA	9296962	9300002	.	-	.	ID=Os03t0275300-01;Name=Os03t0275300-01;Locus_id=Os03g0275300;Note=Hypothetical conserved gene.;Transcript_evidence=AK243581 (DDBJ%2C Best hit);ORF_evidence=Q65XV2 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Ankyrin repeat (IPR002110),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J100082M05;TENOR=Os03t0275300-01;KEGG=Os03t0275300-01
Chr03	irgsp1_rep	five_prime_UTR	9299889	9300002	.	-	.	Parent=Os03t0275300-01
Chr03	irgsp1_rep	CDS	9299706	9299888	.	-	0	Parent=Os03t0275300-01
Chr03	irgsp1_rep	CDS	9299546	9299605	.	-	0	Parent=Os03t0275300-01
Chr03	irgsp1_rep	CDS	9299390	9299461	.	-	0	Parent=Os03t0275300-01
Chr03	irgsp1_rep	CDS	9299169	9299290	.	-	0	Parent=Os03t0275300-01
Chr03	irgsp1_rep	CDS	9298913	9299053	.	-	1	Parent=Os03t0275300-01
Chr03	irgsp1_rep	CDS	9298676	9298783	.	-	1	Parent=Os03t0275300-01
Chr03	irgsp1_rep	CDS	9298270	9298543	.	-	1	Parent=Os03t0275300-01
Chr03	irgsp1_rep	CDS	9297191	9297628	.	-	0	Parent=Os03t0275300-01
Chr03	irgsp1_rep	three_prime_UTR	9296962	9297190	.	-	.	Parent=Os03t0275300-01
Chr03	irgsp1_rep	mRNA	9299703	9299894	.	+	.	ID=Os03t0275350-00;Name=Os03t0275350-00;Locus_id=Os03g0275350;Note=Non-protein coding transcript.;Transcript_evidence=EU948346 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0275350-00
Chr03	irgsp1_rep	exon	9299703	9299894	.	+	.	Parent=Os03t0275350-00
Chr03	irgsp1_rep	mRNA	9307510	9312238	.	+	.	ID=Os03t0275400-01;Name=Os03t0275400-01;Locus_id=Os03g0275400;Note=Zinc finger%2C DHHC-type domain containing protein.;Transcript_evidence=AK120743 (DDBJ%2C Best hit);ORF_evidence=Q10NB5 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C DHHC-type%2C palmitoyltransferase (IPR001594);NIAS_FLcDNA=J023004D13;Expression=AK120743;TENOR=Os03t0275400-01;KEGG=Os03t0275400-01
Chr03	irgsp1_rep	five_prime_UTR	9307510	9307771	.	+	.	Parent=Os03t0275400-01
Chr03	irgsp1_rep	CDS	9307772	9307943	.	+	0	Parent=Os03t0275400-01
Chr03	irgsp1_rep	CDS	9308034	9308168	.	+	2	Parent=Os03t0275400-01
Chr03	irgsp1_rep	CDS	9308616	9308682	.	+	2	Parent=Os03t0275400-01
Chr03	irgsp1_rep	CDS	9308842	9308938	.	+	1	Parent=Os03t0275400-01
Chr03	irgsp1_rep	CDS	9309050	9309146	.	+	0	Parent=Os03t0275400-01
Chr03	irgsp1_rep	CDS	9309231	9309314	.	+	2	Parent=Os03t0275400-01
Chr03	irgsp1_rep	CDS	9309534	9309574	.	+	2	Parent=Os03t0275400-01
Chr03	irgsp1_rep	CDS	9310208	9310273	.	+	0	Parent=Os03t0275400-01
Chr03	irgsp1_rep	CDS	9311533	9311673	.	+	0	Parent=Os03t0275400-01
Chr03	irgsp1_rep	three_prime_UTR	9311674	9311742	.	+	.	Parent=Os03t0275400-01
Chr03	irgsp1_rep	three_prime_UTR	9311820	9312238	.	+	.	Parent=Os03t0275400-01
Chr03	irgsp1_rep	mRNA	9307583	9312143	.	-	.	ID=Os03t0275450-00;Name=Os03t0275450-00;Locus_id=Os03g0275450;Note=Hypothetical protein.;Transcript_evidence=tplb0058f09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0275450-00
Chr03	irgsp1_rep	five_prime_UTR	9311268	9312143	.	-	.	Parent=Os03t0275450-00
Chr03	irgsp1_rep	five_prime_UTR	9310007	9310694	.	-	.	Parent=Os03t0275450-00
Chr03	irgsp1_rep	five_prime_UTR	9309229	9309819	.	-	.	Parent=Os03t0275450-00
Chr03	irgsp1_rep	five_prime_UTR	9309018	9309144	.	-	.	Parent=Os03t0275450-00
Chr03	irgsp1_rep	five_prime_UTR	9308186	9308198	.	-	.	Parent=Os03t0275450-00
Chr03	irgsp1_rep	CDS	9308037	9308185	.	-	0	Parent=Os03t0275450-00
Chr03	irgsp1_rep	CDS	9307583	9307946	.	-	1	Parent=Os03t0275450-00
Chr03	irgsp1_rep	mRNA	9313824	9316626	.	-	.	ID=Os03t0275500-01;Name=Os03t0275500-01;Locus_id=Os03g0275500;Note=Epsin-like%2C N-terminal domain containing protein.;Transcript_evidence=AK065232 (DDBJ%2C Best hit);ORF_evidence=B2D2J2 (UniProt);GO=Biological Process: clathrin coat assembly (GO:0048268),Cellular Component: clathrin coat (GO:0030118),Molecular Function: phospholipid binding (GO:0005543),Molecular Function: 1-phosphatidylinositol binding (GO:0005545),Molecular Function: clathrin binding (GO:0030276);InterPro=ENTH/VHS (IPR008942),ANTH (IPR011417),Epsin-like%2C N-terminal (IPR013809),Clathrin adaptor%2C phosphoinositide-binding%2C GAT-like (IPR014712);NIAS_FLcDNA=J013002H14;Expression=AK065232;TENOR=Os03t0275500-01;KEGG=Os03t0275500-01
Chr03	irgsp1_rep	five_prime_UTR	9316469	9316626	.	-	.	Parent=Os03t0275500-01
Chr03	irgsp1_rep	five_prime_UTR	9315929	9316043	.	-	.	Parent=Os03t0275500-01
Chr03	irgsp1_rep	CDS	9313973	9315928	.	-	0	Parent=Os03t0275500-01
Chr03	irgsp1_rep	three_prime_UTR	9313824	9313972	.	-	.	Parent=Os03t0275500-01
Chr03	irgsp1_rep	mRNA	9313767	9315311	.	-	.	ID=Os03t0275500-02;Name=Os03t0275500-02;Locus_id=Os03g0275500;Note=Similar to predicted protein.;Transcript_evidence=AK060774 (DDBJ%2C Best hit);ORF_evidence=B2D2J2 (UniProt);GO=Biological Process: clathrin coat assembly (GO:0048268),Cellular Component: clathrin coat (GO:0030118),Molecular Function: phospholipid binding (GO:0005543),Molecular Function: 1-phosphatidylinositol binding (GO:0005545),Molecular Function: clathrin binding (GO:0030276);InterPro=ANTH (IPR011417),Clathrin adaptor%2C phosphoinositide-binding%2C GAT-like (IPR014712);NIAS_FLcDNA=001-033-B09;Expression=AK060774;TENOR=Os03t0275500-02;KEGG=Os03t0275500-02
Chr03	irgsp1_rep	five_prime_UTR	9315311	9315311	.	-	.	Parent=Os03t0275500-02
Chr03	irgsp1_rep	CDS	9313973	9315310	.	-	0	Parent=Os03t0275500-02
Chr03	irgsp1_rep	three_prime_UTR	9313767	9313972	.	-	.	Parent=Os03t0275500-02
Chr03	irgsp1_rep	mRNA	9317320	9317558	.	-	.	ID=Os03t0275600-00;Name=Os03t0275600-00;Locus_id=Os03g0275600;Note=Non-protein coding transcript.;Transcript_evidence=AF348493 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0275600-00
Chr03	irgsp1_rep	exon	9317320	9317558	.	-	.	Parent=Os03t0275600-00
Chr03	irgsp1_rep	mRNA	9325520	9326447	.	-	.	ID=Os03t0275700-01;Name=Os03t0275700-01;Locus_id=Os03g0275700;Note=Conserved hypothetical protein.;Transcript_evidence=AK111329 (DDBJ%2C Best hit);ORF_evidence=A3BPI8 (UniProt);NIAS_FLcDNA=002-181-E01;TENOR=Os03t0275700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	9326440	9326447	.	-	.	Parent=Os03t0275700-01
Chr03	irgsp1_rep	CDS	9325813	9326439	.	-	0	Parent=Os03t0275700-01
Chr03	irgsp1_rep	three_prime_UTR	9325520	9325812	.	-	.	Parent=Os03t0275700-01
Chr03	irgsp1_rep	mRNA	9326230	9328311	.	+	.	ID=Os03t0275800-01;Name=Os03t0275800-01;Locus_id=Os03g0275800;Note=Hypothetical protein.;Transcript_evidence=AK121565 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033034M12;Expression=AK121565;TENOR=Os03t0275800-01;KEGG=Os03t0275800-01
Chr03	irgsp1_rep	five_prime_UTR	9326230	9327334	.	+	.	Parent=Os03t0275800-01
Chr03	irgsp1_rep	CDS	9327335	9327613	.	+	0	Parent=Os03t0275800-01
Chr03	irgsp1_rep	three_prime_UTR	9327614	9328311	.	+	.	Parent=Os03t0275800-01
Chr03	irgsp1_rep	mRNA	9329407	9335088	.	+	.	ID=Os03t0275900-01;Name=Os03t0275900-01;Locus_id=Os03g0275900;Oryzabase Gene Symbol Synonym(s)=OsPUB10;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 10%2C U-box protein 10;Note=Similar to Spotted leaf protein 11 (Spotted leaf11) (Cell death-related protein SPL11).;Transcript_evidence=AK121978 (DDBJ%2C Best hit);ORF_evidence=Q0IMG9 (UniProt);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),U box domain (IPR003613),Armadillo-like helical (IPR011989),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033108K08;Oryzabase=17803;Expression=AK121978;TENOR=Os03t0275900-01;KEGG=Os03t0275900-01
Chr03	irgsp1_rep	five_prime_UTR	9329407	9329532	.	+	.	Parent=Os03t0275900-01
Chr03	irgsp1_rep	CDS	9329533	9329940	.	+	0	Parent=Os03t0275900-01
Chr03	irgsp1_rep	CDS	9332507	9332623	.	+	0	Parent=Os03t0275900-01
Chr03	irgsp1_rep	CDS	9332759	9333184	.	+	0	Parent=Os03t0275900-01
Chr03	irgsp1_rep	CDS	9333273	9334502	.	+	0	Parent=Os03t0275900-01
Chr03	irgsp1_rep	three_prime_UTR	9334503	9335088	.	+	.	Parent=Os03t0275900-01
Chr03	irgsp1_rep	mRNA	9329414	9330208	.	+	.	ID=Os03t0275900-02;Name=Os03t0275900-02;Locus_id=Os03g0275900;Oryzabase Gene Symbol Synonym(s)=OsPUB10;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 10%2C U-box protein 10;Note=Hypothetical conserved gene.;Transcript_evidence=AK109303 (DDBJ%2C Best hit);ORF_evidence=B8AL18 (UniProt);NIAS_FLcDNA=002-188-E02;Oryzabase=17803;Expression=AK109303;TENOR=Os03t0275900-02;KEGG=Os03t0275900-02
Chr03	irgsp1_rep	five_prime_UTR	9329414	9329532	.	+	.	Parent=Os03t0275900-02
Chr03	irgsp1_rep	CDS	9329533	9329991	.	+	0	Parent=Os03t0275900-02
Chr03	irgsp1_rep	three_prime_UTR	9329992	9330208	.	+	.	Parent=Os03t0275900-02
Chr03	irgsp1_rep	mRNA	9333013	9334872	.	+	.	ID=Os03t0275900-03;Name=Os03t0275900-03;Locus_id=Os03g0275900;Oryzabase Gene Symbol Synonym(s)=OsPUB10;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 10%2C U-box protein 10;Note=Similar to Protein spotted leaf 11.;Transcript_evidence=AK060190 (DDBJ%2C Best hit);ORF_evidence=Q0IMG9 (UniProt);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),U box domain (IPR003613),Armadillo-like helical (IPR011989),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Armadillo-type fold (IPR016024);NIAS_FLcDNA=001-001-E03;Oryzabase=17803;Expression=AK060190;TENOR=Os03t0275900-03;KEGG=Os03t0275900-03
Chr03	irgsp1_rep	five_prime_UTR	9333013	9333013	.	+	.	Parent=Os03t0275900-03
Chr03	irgsp1_rep	CDS	9333014	9333184	.	+	0	Parent=Os03t0275900-03
Chr03	irgsp1_rep	CDS	9333273	9334502	.	+	0	Parent=Os03t0275900-03
Chr03	irgsp1_rep	three_prime_UTR	9334503	9334872	.	+	.	Parent=Os03t0275900-03
Chr03	irgsp1_rep	mRNA	9329468	9334857	.	-	.	ID=Os03t0275950-00;Name=Os03t0275950-00;Locus_id=Os03g0275950;Note=Hypothetical protein.;Transcript_evidence=tplb0025i19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0275950-00
Chr03	irgsp1_rep	five_prime_UTR	9333267	9334857	.	-	.	Parent=Os03t0275950-00
Chr03	irgsp1_rep	five_prime_UTR	9332756	9333176	.	-	.	Parent=Os03t0275950-00
Chr03	irgsp1_rep	five_prime_UTR	9332602	9332620	.	-	.	Parent=Os03t0275950-00
Chr03	irgsp1_rep	CDS	9332506	9332601	.	-	0	Parent=Os03t0275950-00
Chr03	irgsp1_rep	CDS	9329502	9329939	.	-	0	Parent=Os03t0275950-00
Chr03	irgsp1_rep	three_prime_UTR	9329468	9329501	.	-	.	Parent=Os03t0275950-00
Chr03	irgsp1_rep	mRNA	9359575	9359994	.	-	.	ID=Os03t0276300-00;Name=Os03t0276300-00;Locus_id=Os03g0276300;CGSNL Gene Symbol=DOF14;CGSNL Gene Name=DNA BINDING WITH ONE FINGER 14;Oryzabase Gene Symbol Synonym(s)=OsDof14%2C Dof14%2C OsDof-14;Oryzabase Gene Name Synonym(s)=Dof zinc factor 14%2C Dof transcription factor 14;Note=Similar to Dof domain%2C zinc finger family protein%2C expressed.;Transcript_evidence=GQ183534 (DDBJ%2C Best hit);ORF_evidence=Q10NB0 (UniProt);Oryzabase=8804;TENOR=Os03t0276300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	9359994	9359994	.	-	.	Parent=Os03t0276300-00
Chr03	irgsp1_rep	CDS	9359575	9359993	.	-	0	Parent=Os03t0276300-00
Chr03	irgsp1_rep	mRNA	9370160	9373067	.	+	.	ID=Os03t0276500-01;Name=Os03t0276500-01;Locus_id=Os03g0276500;CGSNL Gene Symbol=HSP71.1;CGSNL Gene Name=71.1 KDA CLASS I HEAT SHOCK PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsHsp71.1%2C OsHSP71.1%2C OsMED37_3%2C MED37_3;Oryzabase Gene Name Synonym(s)=71.1 kDa heat shock protein%2C 71.1-kD heat shock protein%2C Mediator 37_3;Note=Similar to Heat shock protein 70.;Transcript_evidence=AK072830 (DDBJ%2C Best hit),AK099275 (DDBJ%2C Best hit),AK109474 (DDBJ%2C Best hit);ORF_evidence=NP_001148198.1 (RefSeq);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Heat shock protein Hsp70 (IPR001023),Heat shock protein 70 (IPR013126),Heat shock protein 70%2C conserved site (IPR018181);NIAS_FLcDNA=J023139H01,J023078D02,001-129-B01;Oryzabase=11892;TENOR=Os03t0276500-01
Chr03	irgsp1_rep	five_prime_UTR	9370160	9370272	.	+	.	Parent=Os03t0276500-01
Chr03	irgsp1_rep	CDS	9370273	9370486	.	+	0	Parent=Os03t0276500-01
Chr03	irgsp1_rep	CDS	9371144	9372882	.	+	2	Parent=Os03t0276500-01
Chr03	irgsp1_rep	three_prime_UTR	9372883	9373067	.	+	.	Parent=Os03t0276500-01
Chr03	irgsp1_rep	mRNA	9373380	9375758	.	-	.	ID=Os03t0276600-01;Name=Os03t0276600-01;Locus_id=Os03g0276600;Note=FMN-binding split barrel-related domain containing protein.;Transcript_evidence=AK066437 (DDBJ%2C Best hit);ORF_evidence=B8AL20 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FMN-binding split barrel-related (IPR009002),FMN-binding split barrel (IPR012349);NIAS_FLcDNA=J013067M23;Expression=AK066437;TENOR=Os03t0276600-01;KEGG=Os03t0276600-01
Chr03	irgsp1_rep	five_prime_UTR	9375521	9375758	.	-	.	Parent=Os03t0276600-01
Chr03	irgsp1_rep	CDS	9375467	9375520	.	-	0	Parent=Os03t0276600-01
Chr03	irgsp1_rep	CDS	9375319	9375380	.	-	0	Parent=Os03t0276600-01
Chr03	irgsp1_rep	CDS	9375140	9375230	.	-	1	Parent=Os03t0276600-01
Chr03	irgsp1_rep	CDS	9374944	9375030	.	-	0	Parent=Os03t0276600-01
Chr03	irgsp1_rep	CDS	9374781	9374834	.	-	0	Parent=Os03t0276600-01
Chr03	irgsp1_rep	CDS	9374344	9374528	.	-	0	Parent=Os03t0276600-01
Chr03	irgsp1_rep	CDS	9374137	9374219	.	-	1	Parent=Os03t0276600-01
Chr03	irgsp1_rep	CDS	9373902	9374002	.	-	2	Parent=Os03t0276600-01
Chr03	irgsp1_rep	CDS	9373512	9373727	.	-	0	Parent=Os03t0276600-01
Chr03	irgsp1_rep	three_prime_UTR	9373380	9373511	.	-	.	Parent=Os03t0276600-01
Chr03	irgsp1_rep	mRNA	9375984	9377688	.	+	.	ID=Os03t0276700-01;Name=Os03t0276700-01;Locus_id=Os03g0276700;Note=Conserved hypothetical protein.;Transcript_evidence=AK063885 (DDBJ%2C Best hit);ORF_evidence=B8AL21 (UniProt);NIAS_FLcDNA=001-122-F12;Expression=AK063885;TENOR=Os03t0276700-01;KEGG=Os03t0276700-01
Chr03	irgsp1_rep	five_prime_UTR	9375984	9376072	.	+	.	Parent=Os03t0276700-01
Chr03	irgsp1_rep	five_prime_UTR	9377154	9377166	.	+	.	Parent=Os03t0276700-01
Chr03	irgsp1_rep	CDS	9377167	9377337	.	+	0	Parent=Os03t0276700-01
Chr03	irgsp1_rep	CDS	9377433	9377507	.	+	0	Parent=Os03t0276700-01
Chr03	irgsp1_rep	three_prime_UTR	9377508	9377688	.	+	.	Parent=Os03t0276700-01
Chr03	irgsp1_rep	mRNA	9377893	9382592	.	-	.	ID=Os03t0276800-01;Name=Os03t0276800-01;Locus_id=Os03g0276800;Oryzabase Gene Symbol Synonym(s)=OsHSP70%2C hsp70;Oryzabase Gene Name Synonym(s)=heat shock protein 70%2C heat-shock protein 70%2C HEAT SHOCK PROTEIN 70KD;Note=Heat shock protein Hsp70 family protein.;Transcript_evidence=AK106371 (DDBJ%2C Best hit);ORF_evidence=P09189 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Heat shock protein Hsp70 (IPR001023),Heat shock protein 70 (IPR013126),Heat shock protein 70%2C conserved site (IPR018181);NIAS_FLcDNA=002-102-C09;Oryzabase=18150;Expression=AK106371;TENOR=Os03t0276800-01;KEGG=Os03t0276800-01
Chr03	irgsp1_rep	five_prime_UTR	9382550	9382592	.	-	.	Parent=Os03t0276800-01
Chr03	irgsp1_rep	CDS	9382327	9382549	.	-	0	Parent=Os03t0276800-01
Chr03	irgsp1_rep	CDS	9378020	9379479	.	-	2	Parent=Os03t0276800-01
Chr03	irgsp1_rep	three_prime_UTR	9377893	9378019	.	-	.	Parent=Os03t0276800-01
Chr03	irgsp1_rep	mRNA	9378059	9382519	.	+	.	ID=Os03t0276850-00;Name=Os03t0276850-00;Locus_id=Os03g0276850;Note=Glutamate dehydrogenase%2C NAD-specific domain containing protein.;Transcript_evidence=tplb0044f08 (Wheat FLcDNA);ORF_evidence=longestORF;InterPro=Glutamate dehydrogenase%2C NAD-specific (IPR019651);TENOR=Os03t0276850-00
Chr03	irgsp1_rep	CDS	9378059	9379420	.	+	0	Parent=Os03t0276850-00
Chr03	irgsp1_rep	three_prime_UTR	9379421	9379479	.	+	.	Parent=Os03t0276850-00
Chr03	irgsp1_rep	three_prime_UTR	9382327	9382519	.	+	.	Parent=Os03t0276850-00
Chr03	irgsp1_rep	mRNA	9383048	9387390	.	-	.	ID=Os03t0276900-00;Name=Os03t0276900-00;Locus_id=Os03g0276900;Note=Similar to BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein.;Transcript_evidence=CT835185 (DDBJ%2C Best hit);ORF_evidence=NP_001152358.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020),Molecular Function: acetylglucosaminyltransferase activity (GO:0008375);InterPro=Glycosyl transferase%2C family 14 (IPR003406);TENOR=Os03t0276900-00;KEGG=Os03t0276900-00 (EC:2.4.2.26)
Chr03	irgsp1_rep	five_prime_UTR	9387261	9387390	.	-	.	Parent=Os03t0276900-00
Chr03	irgsp1_rep	CDS	9386759	9387260	.	-	0	Parent=Os03t0276900-00
Chr03	irgsp1_rep	CDS	9384918	9384993	.	-	2	Parent=Os03t0276900-00
Chr03	irgsp1_rep	CDS	9384722	9384837	.	-	1	Parent=Os03t0276900-00
Chr03	irgsp1_rep	CDS	9383109	9383623	.	-	2	Parent=Os03t0276900-00
Chr03	irgsp1_rep	three_prime_UTR	9383048	9383108	.	-	.	Parent=Os03t0276900-00
Chr03	irgsp1_rep	mRNA	9392349	9395747	.	-	.	ID=Os03t0277000-01;Name=Os03t0277000-01;Locus_id=Os03g0277000;RAP-DB Gene Symbol Synonym(s)=OsGDI3;RAP-DB Gene Name Synonym(s)=GDP dissociation inhibitor 3;Oryzabase Gene Symbol Synonym(s)=OsGDI3;Oryzabase Gene Name Synonym(s)=GDP dissociation inhibitor 3%2C GDP dissociation inhibitor3%2C GDP dissociation inhibitor protein OsGDI3;Note=GDP dissociation inhibitor%2C Negative regulator for Rab%2C Negative feedback between Rab GDP-GTP cycle and MAPK pathways;Transcript_evidence=AK100522;ORF_evidence=Q10NA3;GO=Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: GDP-dissociation inhibitor activity (GO:0005092),Molecular Function: Rab GDP-dissociation inhibitor activity (GO:0005093),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=GDP dissociation inhibitor (IPR018203),Rab GDI protein (IPR000806),FAD/NAD(P)-binding domain (IPR023753);NIAS_FLcDNA=J023100O09;Manual Curation=May 9%2C 2017;Literature_PMID=22020099;Oryzabase=11434;Expression=AK100522;TENOR=Os03t0277000-01;KEGG=Os03t0277000-01
Chr03	irgsp1_rep	five_prime_UTR	9395633	9395747	.	-	.	Parent=Os03t0277000-01
Chr03	irgsp1_rep	CDS	9395546	9395632	.	-	0	Parent=Os03t0277000-01
Chr03	irgsp1_rep	CDS	9395025	9395087	.	-	0	Parent=Os03t0277000-01
Chr03	irgsp1_rep	CDS	9394803	9394886	.	-	0	Parent=Os03t0277000-01
Chr03	irgsp1_rep	CDS	9394616	9394723	.	-	0	Parent=Os03t0277000-01
Chr03	irgsp1_rep	CDS	9394348	9394520	.	-	0	Parent=Os03t0277000-01
Chr03	irgsp1_rep	CDS	9394142	9394253	.	-	1	Parent=Os03t0277000-01
Chr03	irgsp1_rep	CDS	9393711	9393791	.	-	0	Parent=Os03t0277000-01
Chr03	irgsp1_rep	CDS	9393570	9393632	.	-	0	Parent=Os03t0277000-01
Chr03	irgsp1_rep	CDS	9393386	9393487	.	-	0	Parent=Os03t0277000-01
Chr03	irgsp1_rep	CDS	9393173	9393297	.	-	0	Parent=Os03t0277000-01
Chr03	irgsp1_rep	CDS	9392828	9393038	.	-	1	Parent=Os03t0277000-01
Chr03	irgsp1_rep	CDS	9392677	9392751	.	-	0	Parent=Os03t0277000-01
Chr03	irgsp1_rep	CDS	9392509	9392568	.	-	0	Parent=Os03t0277000-01
Chr03	irgsp1_rep	three_prime_UTR	9392349	9392508	.	-	.	Parent=Os03t0277000-01
Chr03	irgsp1_rep	mRNA	9404128	9405129	.	+	.	ID=Os03t0277100-01;Name=Os03t0277100-01;Locus_id=Os03g0277100;Note=HSP20-like chaperone domain containing protein.;Transcript_evidence=AK058992 (DDBJ%2C Best hit);ORF_evidence=B6SW94 (UniProt);NIAS_FLcDNA=001-020-F09;Expression=AK058992;TENOR=Os03t0277100-01;KEGG=Os03t0277100-01
Chr03	irgsp1_rep	five_prime_UTR	9404128	9404128	.	+	.	Parent=Os03t0277100-01
Chr03	irgsp1_rep	CDS	9404129	9404857	.	+	0	Parent=Os03t0277100-01
Chr03	irgsp1_rep	three_prime_UTR	9404858	9405129	.	+	.	Parent=Os03t0277100-01
Chr03	irgsp1_rep	mRNA	9411494	9416082	.	-	.	ID=Os03t0277300-01;Name=Os03t0277300-01;Locus_id=Os03g0277300;CGSNL Gene Symbol=HSP70;CGSNL Gene Name=HEAT SHOCK PROTEIN 70KD;Oryzabase Gene Symbol Synonym(s)=OsHSP70%2C OsEnS-45%2C EnS-45;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 45;Note=Heat shock protein 70.;Transcript_evidence=AK287481 (DDBJ%2C Best hit);ORF_evidence=C6F1K2 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Heat shock protein Hsp70 (IPR001023),Heat shock protein 70 (IPR013126),Heat shock protein 70%2C conserved site (IPR018181);NIAS_FLcDNA=J043024K11;Oryzabase=7356;TENOR=Os03t0277300-01;KEGG=Os03t0277300-01
Chr03	irgsp1_rep	five_prime_UTR	9415949	9416082	.	-	.	Parent=Os03t0277300-01
Chr03	irgsp1_rep	CDS	9415732	9415948	.	-	0	Parent=Os03t0277300-01
Chr03	irgsp1_rep	CDS	9411883	9413627	.	-	2	Parent=Os03t0277300-01
Chr03	irgsp1_rep	three_prime_UTR	9411494	9411882	.	-	.	Parent=Os03t0277300-01
Chr03	irgsp1_rep	mRNA	9418945	9419670	.	-	.	ID=Os03t0277500-01;Name=Os03t0277500-01;Locus_id=Os03g0277500;CGSNL Gene Symbol=GLYI3;CGSNL Gene Name=GLYOXALASE I-3;Oryzabase Gene Symbol Synonym(s)=OsGLYI3;Oryzabase Gene Name Synonym(s)=glyoxalase I-3;Note=Similar to Glyoxalase family protein%2C expressed.;Transcript_evidence=AK063650 (DDBJ%2C Best hit);ORF_evidence=Q10N99 (UniProt);NIAS_FLcDNA=001-119-A11;Oryzabase=9353;TENOR=Os03t0277500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	9419471	9419670	.	-	0	Parent=Os03t0277500-01
Chr03	irgsp1_rep	CDS	9419082	9419370	.	-	1	Parent=Os03t0277500-01
Chr03	irgsp1_rep	three_prime_UTR	9418945	9419081	.	-	.	Parent=Os03t0277500-01
Chr03	irgsp1_rep	mRNA	9421699	9422925	.	-	.	ID=Os03t0277600-01;Name=Os03t0277600-01;Locus_id=Os03g0277600;Oryzabase Gene Symbol Synonym(s)=OsDUF26%2C CRRSP%2C OsCRRSP55%2C CRRSP55;Oryzabase Gene Name Synonym(s)=domain unknown function 26%2C Cys Rich Repeat Secretory Protein 55%2C cysteine-rich repeat secretory protein 55;Note=Similar to (clone wusl1032) mRNA sequence.;Transcript_evidence=AK061425 (DDBJ%2C Best hit);ORF_evidence=B6SUE5 (UniProt);InterPro=Gnk2-homologous domain (IPR002902);NIAS_FLcDNA=006-306-G05;Oryzabase=10232;Expression=AK061425;TENOR=Os03t0277600-01;KEGG=Os03t0277600-01
Chr03	irgsp1_rep	five_prime_UTR	9422834	9422925	.	-	.	Parent=Os03t0277600-01
Chr03	irgsp1_rep	CDS	9422490	9422833	.	-	0	Parent=Os03t0277600-01
Chr03	irgsp1_rep	CDS	9421942	9422395	.	-	1	Parent=Os03t0277600-01
Chr03	irgsp1_rep	three_prime_UTR	9421699	9421941	.	-	.	Parent=Os03t0277600-01
Chr03	irgsp1_rep	mRNA	9421942	9422836	.	+	.	ID=Os03t0277650-00;Name=Os03t0277650-00;Locus_id=Os03g0277650;Note=Similar to (clone wusl1032) mRNA sequence.;Transcript_evidence=L14835 (DDBJ);ORF_evidence=Q43707 (UniProt);TENOR=Os03t0277650-00;KEGG=Os03t0277650-00
Chr03	irgsp1_rep	five_prime_UTR	9421942	9422238	.	+	.	Parent=Os03t0277650-00
Chr03	irgsp1_rep	CDS	9422239	9422401	.	+	0	Parent=Os03t0277650-00
Chr03	irgsp1_rep	CDS	9422502	9422737	.	+	2	Parent=Os03t0277650-00
Chr03	irgsp1_rep	three_prime_UTR	9422738	9422836	.	+	.	Parent=Os03t0277650-00
Chr03	irgsp1_rep	mRNA	9425601	9426838	.	-	.	ID=Os03t0277700-01;Name=Os03t0277700-01;Locus_id=Os03g0277700;Note=Protein of unknown function DUF26 domain containing protein.;Transcript_evidence=AK061148 (DDBJ%2C Best hit);ORF_evidence=B6SUE5 (UniProt);InterPro=Gnk2-homologous domain (IPR002902);NIAS_FLcDNA=006-208-D09;Expression=AK061148;TENOR=Os03t0277700-01;KEGG=Os03t0277700-01
Chr03	irgsp1_rep	five_prime_UTR	9426758	9426838	.	-	.	Parent=Os03t0277700-01
Chr03	irgsp1_rep	CDS	9426411	9426757	.	-	0	Parent=Os03t0277700-01
Chr03	irgsp1_rep	CDS	9425872	9426322	.	-	1	Parent=Os03t0277700-01
Chr03	irgsp1_rep	three_prime_UTR	9425601	9425871	.	-	.	Parent=Os03t0277700-01
Chr03	irgsp1_rep	mRNA	9429144	9429874	.	-	.	ID=Os03t0277800-00;Name=Os03t0277800-00;Locus_id=Os03g0277800;Note=Similar to glycine-rich protein 2b.;Transcript_evidence=EU971110 (DDBJ);ORF_evidence=B6TP60 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677);InterPro=Cold-shock protein%2C DNA-binding (IPR002059),Cold shock protein (IPR011129),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),Cold-shock conserved site (IPR019844);TENOR=Os03t0277800-00;KEGG=Os03t0277800-00
Chr03	irgsp1_rep	five_prime_UTR	9429846	9429874	.	-	.	Parent=Os03t0277800-00
Chr03	irgsp1_rep	CDS	9429144	9429845	.	-	0	Parent=Os03t0277800-00
Chr03	irgsp1_rep	mRNA	9436483	9440576	.	+	.	ID=Os03t0278000-01;Name=Os03t0278000-01;Locus_id=Os03g0278000;Oryzabase Gene Symbol Synonym(s)=UXS%2C UXS-3%2C OsUXS3;Oryzabase Gene Name Synonym(s)=UDP-D-glucuronic acid decarboxylase%2C UDP-glucuronic acid decarboxylase 3%2C UDP-xylose synthase 3;Note=UDP-glucuronic acid decarboxylase.;Transcript_evidence=AK100908 (DDBJ%2C Best hit);ORF_evidence=Q9FSE2 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023132F05;Oryzabase=13974;Expression=AK100908;TENOR=Os03t0278000-01;KEGG=Os03t0278000-01 (EC:4.2.1.46)
Chr03	irgsp1_rep	five_prime_UTR	9436483	9436957	.	+	.	Parent=Os03t0278000-01
Chr03	irgsp1_rep	five_prime_UTR	9437162	9437173	.	+	.	Parent=Os03t0278000-01
Chr03	irgsp1_rep	CDS	9437174	9437269	.	+	0	Parent=Os03t0278000-01
Chr03	irgsp1_rep	CDS	9437368	9437454	.	+	0	Parent=Os03t0278000-01
Chr03	irgsp1_rep	CDS	9438124	9438211	.	+	0	Parent=Os03t0278000-01
Chr03	irgsp1_rep	CDS	9438765	9438856	.	+	2	Parent=Os03t0278000-01
Chr03	irgsp1_rep	CDS	9438962	9439026	.	+	0	Parent=Os03t0278000-01
Chr03	irgsp1_rep	CDS	9439114	9439202	.	+	1	Parent=Os03t0278000-01
Chr03	irgsp1_rep	CDS	9439296	9439373	.	+	2	Parent=Os03t0278000-01
Chr03	irgsp1_rep	CDS	9439461	9439554	.	+	2	Parent=Os03t0278000-01
Chr03	irgsp1_rep	CDS	9439639	9439705	.	+	1	Parent=Os03t0278000-01
Chr03	irgsp1_rep	CDS	9439801	9439864	.	+	0	Parent=Os03t0278000-01
Chr03	irgsp1_rep	CDS	9439990	9440030	.	+	2	Parent=Os03t0278000-01
Chr03	irgsp1_rep	CDS	9440115	9440306	.	+	0	Parent=Os03t0278000-01
Chr03	irgsp1_rep	three_prime_UTR	9440307	9440576	.	+	.	Parent=Os03t0278000-01
Chr03	irgsp1_rep	mRNA	9436871	9440565	.	+	.	ID=Os03t0278000-02;Name=Os03t0278000-02;Locus_id=Os03g0278000;Oryzabase Gene Symbol Synonym(s)=UXS%2C UXS-3%2C OsUXS3;Oryzabase Gene Name Synonym(s)=UDP-D-glucuronic acid decarboxylase%2C UDP-glucuronic acid decarboxylase 3%2C UDP-xylose synthase 3;Note=UDP-glucuronic acid decarboxylase.;Transcript_evidence=AK060031 (DDBJ%2C Best hit);ORF_evidence=Q9FSE2 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=006-303-H02;Oryzabase=13974;Expression=AK060031;TENOR=Os03t0278000-02;KEGG=Os03t0278000-02 (EC:4.2.1.46)
Chr03	irgsp1_rep	five_prime_UTR	9436871	9436957	.	+	.	Parent=Os03t0278000-02
Chr03	irgsp1_rep	five_prime_UTR	9437162	9437173	.	+	.	Parent=Os03t0278000-02
Chr03	irgsp1_rep	CDS	9437174	9437269	.	+	0	Parent=Os03t0278000-02
Chr03	irgsp1_rep	CDS	9437368	9437454	.	+	0	Parent=Os03t0278000-02
Chr03	irgsp1_rep	CDS	9438124	9438211	.	+	0	Parent=Os03t0278000-02
Chr03	irgsp1_rep	CDS	9438765	9438856	.	+	2	Parent=Os03t0278000-02
Chr03	irgsp1_rep	CDS	9438962	9439026	.	+	0	Parent=Os03t0278000-02
Chr03	irgsp1_rep	CDS	9439114	9439202	.	+	1	Parent=Os03t0278000-02
Chr03	irgsp1_rep	CDS	9439296	9439373	.	+	2	Parent=Os03t0278000-02
Chr03	irgsp1_rep	CDS	9439461	9439554	.	+	2	Parent=Os03t0278000-02
Chr03	irgsp1_rep	CDS	9439639	9439705	.	+	1	Parent=Os03t0278000-02
Chr03	irgsp1_rep	CDS	9439801	9439864	.	+	0	Parent=Os03t0278000-02
Chr03	irgsp1_rep	CDS	9439990	9440030	.	+	2	Parent=Os03t0278000-02
Chr03	irgsp1_rep	CDS	9440115	9440306	.	+	0	Parent=Os03t0278000-02
Chr03	irgsp1_rep	three_prime_UTR	9440307	9440565	.	+	.	Parent=Os03t0278000-02
Chr03	irgsp1_rep	mRNA	9440113	9440572	.	+	.	ID=Os03t0278000-03;Name=Os03t0278000-03;Locus_id=Os03g0278000;Oryzabase Gene Symbol Synonym(s)=UXS%2C UXS-3%2C OsUXS3;Oryzabase Gene Name Synonym(s)=UDP-D-glucuronic acid decarboxylase%2C UDP-glucuronic acid decarboxylase 3%2C UDP-xylose synthase 3;Note=Similar to D-TDP-glucose dehydratase.;Transcript_evidence=AK061632 (DDBJ%2C Best hit);ORF_evidence=Q9FSE2 (UniProt);NIAS_FLcDNA=001-036-A03;Oryzabase=13974;Expression=AK061632;TENOR=Os03t0278000-03;KEGG=Os03t0278000-03 (EC:4.2.1.46)
Chr03	irgsp1_rep	five_prime_UTR	9440113	9440114	.	+	.	Parent=Os03t0278000-03
Chr03	irgsp1_rep	CDS	9440115	9440306	.	+	0	Parent=Os03t0278000-03
Chr03	irgsp1_rep	three_prime_UTR	9440307	9440572	.	+	.	Parent=Os03t0278000-03
Chr03	irgsp1_rep	mRNA	9438764	9440299	.	-	.	ID=Os03t0278066-00;Name=Os03t0278066-00;Locus_id=Os03g0278066;Note=Non-protein coding transcript.;Transcript_evidence=tplb0036f05 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os03t0278066-00
Chr03	irgsp1_rep	exon	9440108	9440299	.	-	.	Parent=Os03t0278066-00
Chr03	irgsp1_rep	exon	9439753	9439897	.	-	.	Parent=Os03t0278066-00
Chr03	irgsp1_rep	exon	9439414	9439572	.	-	.	Parent=Os03t0278066-00
Chr03	irgsp1_rep	exon	9439109	9439227	.	-	.	Parent=Os03t0278066-00
Chr03	irgsp1_rep	exon	9438964	9439022	.	-	.	Parent=Os03t0278066-00
Chr03	irgsp1_rep	exon	9438764	9438863	.	-	.	Parent=Os03t0278066-00
Chr03	irgsp1_rep	mRNA	9445434	9448694	.	+	.	ID=Os03t0278200-01;Name=Os03t0278200-01;Locus_id=Os03g0278200;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK103544 (DDBJ%2C Best hit);ORF_evidence=NP_001151455.1 (RefSeq);GO=Biological Process: cellular metabolic process (GO:0044237),Biological Process: extracellular polysaccharide biosynthetic process (GO:0045226),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: dTDP-4-dehydrorhamnose reductase activity (GO:0008831),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),dTDP-4-dehydrorhamnose reductase (IPR005913),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033132E05;Expression=AK103544;TENOR=Os03t0278200-01;KEGG=Os03t0278200-01 (EC:4.2.1.76)
Chr03	irgsp1_rep	five_prime_UTR	9445434	9445577	.	+	.	Parent=Os03t0278200-01
Chr03	irgsp1_rep	five_prime_UTR	9446247	9446255	.	+	.	Parent=Os03t0278200-01
Chr03	irgsp1_rep	CDS	9446256	9447830	.	+	0	Parent=Os03t0278200-01
Chr03	irgsp1_rep	CDS	9447926	9448378	.	+	0	Parent=Os03t0278200-01
Chr03	irgsp1_rep	three_prime_UTR	9448379	9448694	.	+	.	Parent=Os03t0278200-01
Chr03	irgsp1_rep	mRNA	9446710	9448696	.	+	.	ID=Os03t0278200-02;Name=Os03t0278200-02;Locus_id=Os03g0278200;Note=Similar to RHM1.;Transcript_evidence=AK064303 (DDBJ%2C Best hit);ORF_evidence=NP_001151455.1 (RefSeq);GO=Biological Process: cellular metabolic process (GO:0044237),Biological Process: extracellular polysaccharide biosynthetic process (GO:0045226),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: dTDP-4-dehydrorhamnose reductase activity (GO:0008831),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),dTDP-4-dehydrorhamnose reductase (IPR005913),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=002-107-B05;Expression=AK064303;TENOR=Os03t0278200-02;KEGG=Os03t0278200-02 (EC:4.2.1.76)
Chr03	irgsp1_rep	five_prime_UTR	9446710	9446711	.	+	.	Parent=Os03t0278200-02
Chr03	irgsp1_rep	CDS	9446712	9447830	.	+	0	Parent=Os03t0278200-02
Chr03	irgsp1_rep	CDS	9447926	9448378	.	+	0	Parent=Os03t0278200-02
Chr03	irgsp1_rep	three_prime_UTR	9448379	9448696	.	+	.	Parent=Os03t0278200-02
Chr03	irgsp1_rep	mRNA	9446247	9448379	.	-	.	ID=Os03t0278250-00;Name=Os03t0278250-00;Locus_id=Os03g0278250;Note=Hypothetical protein.;Transcript_evidence=tplb0036h19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0278250-00
Chr03	irgsp1_rep	five_prime_UTR	9448321	9448379	.	-	.	Parent=Os03t0278250-00
Chr03	irgsp1_rep	CDS	9448033	9448320	.	-	0	Parent=Os03t0278250-00
Chr03	irgsp1_rep	three_prime_UTR	9447956	9448032	.	-	.	Parent=Os03t0278250-00
Chr03	irgsp1_rep	three_prime_UTR	9446247	9447865	.	-	.	Parent=Os03t0278250-00
Chr03	irgsp1_rep	mRNA	9449955	9453031	.	-	.	ID=Os03t0278300-01;Name=Os03t0278300-01;Locus_id=Os03g0278300;Note=Similar to ALY protein.;Transcript_evidence=AK064165 (DDBJ%2C Best hit);ORF_evidence=B6TMR7 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=002-103-H02;Expression=AK064165;TENOR=Os03t0278300-01;KEGG=Os03t0278300-01
Chr03	irgsp1_rep	five_prime_UTR	9452979	9453031	.	-	.	Parent=Os03t0278300-01
Chr03	irgsp1_rep	CDS	9452892	9452978	.	-	0	Parent=Os03t0278300-01
Chr03	irgsp1_rep	CDS	9452650	9452670	.	-	0	Parent=Os03t0278300-01
Chr03	irgsp1_rep	CDS	9452346	9452501	.	-	0	Parent=Os03t0278300-01
Chr03	irgsp1_rep	CDS	9451796	9451864	.	-	0	Parent=Os03t0278300-01
Chr03	irgsp1_rep	CDS	9451528	9451706	.	-	0	Parent=Os03t0278300-01
Chr03	irgsp1_rep	CDS	9450854	9451058	.	-	1	Parent=Os03t0278300-01
Chr03	irgsp1_rep	three_prime_UTR	9450455	9450853	.	-	.	Parent=Os03t0278300-01
Chr03	irgsp1_rep	three_prime_UTR	9449955	9450344	.	-	.	Parent=Os03t0278300-01
Chr03	irgsp1_rep	mRNA	9450641	9453006	.	-	.	ID=Os03t0278300-02;Name=Os03t0278300-02;Locus_id=Os03g0278300;Note=Transcriptional coactivator-like protein.;Transcript_evidence=AK071965 (DDBJ%2C Best hit),AK060280 (DDBJ%2C Best hit),AK100762 (DDBJ%2C Best hit),AK119667 (DDBJ%2C Best hit);ORF_evidence=B6TMR7 (UniProt);NIAS_FLcDNA=J013081B11,001-006-B02,J023119I24,002-144-D05;TENOR=Os03t0278300-02;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	9452863	9453006	.	-	.	Parent=Os03t0278300-02
Chr03	irgsp1_rep	CDS	9452650	9452862	.	-	0	Parent=Os03t0278300-02
Chr03	irgsp1_rep	CDS	9452346	9452501	.	-	0	Parent=Os03t0278300-02
Chr03	irgsp1_rep	CDS	9451796	9451864	.	-	0	Parent=Os03t0278300-02
Chr03	irgsp1_rep	CDS	9451528	9451706	.	-	0	Parent=Os03t0278300-02
Chr03	irgsp1_rep	CDS	9450854	9451058	.	-	1	Parent=Os03t0278300-02
Chr03	irgsp1_rep	three_prime_UTR	9450641	9450853	.	-	.	Parent=Os03t0278300-02
Chr03	irgsp1_rep	mRNA	9449358	9452530	.	-	.	ID=Os03t0278300-04;Name=Os03t0278300-04;Locus_id=Os03g0278300;Note=Similar to THO complex subunit 4.;Transcript_evidence=AK072759 (DDBJ%2C Best hit);ORF_evidence=B6TMR7 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023140G09;Expression=AK072759;TENOR=Os03t0278300-04;KEGG=Os03t0278300-04
Chr03	irgsp1_rep	five_prime_UTR	9452529	9452530	.	-	.	Parent=Os03t0278300-04
Chr03	irgsp1_rep	CDS	9452346	9452528	.	-	0	Parent=Os03t0278300-04
Chr03	irgsp1_rep	CDS	9451796	9451864	.	-	0	Parent=Os03t0278300-04
Chr03	irgsp1_rep	CDS	9451528	9451706	.	-	0	Parent=Os03t0278300-04
Chr03	irgsp1_rep	CDS	9450854	9451058	.	-	1	Parent=Os03t0278300-04
Chr03	irgsp1_rep	three_prime_UTR	9449358	9450853	.	-	.	Parent=Os03t0278300-04
Chr03	irgsp1_rep	mRNA	9450566	9452512	.	+	.	ID=Os03t0278333-00;Name=Os03t0278333-00;Locus_id=Os03g0278333;Note=Hypothetical gene.;Transcript_evidence=BT009294 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0278333-00;KEGG=Os03t0278333-00
Chr03	irgsp1_rep	five_prime_UTR	9450566	9450596	.	+	.	Parent=Os03t0278333-00
Chr03	irgsp1_rep	CDS	9450597	9450833	.	+	0	Parent=Os03t0278333-00
Chr03	irgsp1_rep	three_prime_UTR	9450834	9451060	.	+	.	Parent=Os03t0278333-00
Chr03	irgsp1_rep	three_prime_UTR	9451535	9451701	.	+	.	Parent=Os03t0278333-00
Chr03	irgsp1_rep	three_prime_UTR	9451783	9451863	.	+	.	Parent=Os03t0278333-00
Chr03	irgsp1_rep	three_prime_UTR	9452345	9452512	.	+	.	Parent=Os03t0278333-00
Chr03	irgsp1_rep	mRNA	9454991	9458143	.	+	.	ID=Os03t0278366-01;Name=Os03t0278366-01;Locus_id=Os03g0278366;Note=Hypothetical conserved gene.;Transcript_evidence=AK288381 (DDBJ%2C Best hit);ORF_evidence=B9F7C0 (UniProt);NIAS_FLcDNA=J090026M09;TENOR=Os03t0278366-01;KEGG=Os03t0278366-01
Chr03	irgsp1_rep	five_prime_UTR	9454991	9455453	.	+	.	Parent=Os03t0278366-01
Chr03	irgsp1_rep	CDS	9455454	9455777	.	+	0	Parent=Os03t0278366-01
Chr03	irgsp1_rep	three_prime_UTR	9455778	9458143	.	+	.	Parent=Os03t0278366-01
Chr03	irgsp1_rep	mRNA	9455580	9458843	.	-	.	ID=Os03t0278400-01;Name=Os03t0278400-01;Locus_id=Os03g0278400;Note=Similar to ADP ribosylation GTPase-like protein (Fragment).;Transcript_evidence=AK070052 (DDBJ%2C Best hit);ORF_evidence=Q84PA3 (UniProt);GO=Biological Process: regulation of ARF GTPase activity (GO:0032312),Molecular Function: ARF GTPase activator activity (GO:0008060),Molecular Function: zinc ion binding (GO:0008270);InterPro=Arf GTPase activating protein (IPR001164);NIAS_FLcDNA=J023040P09;Expression=AK070052;TENOR=Os03t0278400-01;KEGG=Os03t0278400-01
Chr03	irgsp1_rep	five_prime_UTR	9458829	9458843	.	-	.	Parent=Os03t0278400-01
Chr03	irgsp1_rep	CDS	9458037	9458828	.	-	0	Parent=Os03t0278400-01
Chr03	irgsp1_rep	CDS	9457057	9457146	.	-	0	Parent=Os03t0278400-01
Chr03	irgsp1_rep	CDS	9456089	9456568	.	-	0	Parent=Os03t0278400-01
Chr03	irgsp1_rep	three_prime_UTR	9455580	9456088	.	-	.	Parent=Os03t0278400-01
Chr03	irgsp1_rep	mRNA	9461167	9465395	.	+	.	ID=Os03t0278500-01;Name=Os03t0278500-01;Locus_id=Os03g0278500;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK070850 (DDBJ%2C Best hit);ORF_evidence=B8AL31 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723);InterPro=RNA recognition motif domain (IPR000504),Polyadenylate-binding protein/Hyperplastic disc protein (IPR002004),Polyadenylate binding protein%2C human types 1%2C 2%2C 3%2C 4 (IPR006515),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023066B20;Expression=AK070850;TENOR=Os03t0278500-01;KEGG=Os03t0278500-01
Chr03	irgsp1_rep	five_prime_UTR	9461167	9461308	.	+	.	Parent=Os03t0278500-01
Chr03	irgsp1_rep	CDS	9461309	9461582	.	+	0	Parent=Os03t0278500-01
Chr03	irgsp1_rep	CDS	9462579	9462697	.	+	2	Parent=Os03t0278500-01
Chr03	irgsp1_rep	CDS	9462780	9462973	.	+	0	Parent=Os03t0278500-01
Chr03	irgsp1_rep	CDS	9463068	9463324	.	+	1	Parent=Os03t0278500-01
Chr03	irgsp1_rep	CDS	9463438	9463544	.	+	2	Parent=Os03t0278500-01
Chr03	irgsp1_rep	CDS	9463609	9463798	.	+	0	Parent=Os03t0278500-01
Chr03	irgsp1_rep	CDS	9463889	9464175	.	+	2	Parent=Os03t0278500-01
Chr03	irgsp1_rep	CDS	9464253	9464384	.	+	0	Parent=Os03t0278500-01
Chr03	irgsp1_rep	CDS	9464670	9464849	.	+	0	Parent=Os03t0278500-01
Chr03	irgsp1_rep	CDS	9464956	9465159	.	+	0	Parent=Os03t0278500-01
Chr03	irgsp1_rep	three_prime_UTR	9465160	9465395	.	+	.	Parent=Os03t0278500-01
Chr03	irgsp1_rep	mRNA	9461415	9462992	.	-	.	ID=Os03t0278533-00;Name=Os03t0278533-00;Locus_id=Os03g0278533;Note=Non-protein coding transcript.;Transcript_evidence=BT086926 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0278533-00
Chr03	irgsp1_rep	exon	9462801	9462992	.	-	.	Parent=Os03t0278533-00
Chr03	irgsp1_rep	exon	9462600	9462713	.	-	.	Parent=Os03t0278533-00
Chr03	irgsp1_rep	exon	9461415	9461606	.	-	.	Parent=Os03t0278533-00
Chr03	irgsp1_rep	mRNA	9478633	9479242	.	-	.	ID=Os03t0278566-00;Name=Os03t0278566-00;Locus_id=Os03g0278566;Note=Conserved hypothetical protein.;Transcript_evidence=EU975270 (DDBJ);ORF_evidence=Q9LIY4 (UniProt);TENOR=Os03t0278566-00
Chr03	irgsp1_rep	CDS	9478871	9479242	.	-	0	Parent=Os03t0278566-00
Chr03	irgsp1_rep	three_prime_UTR	9478633	9478870	.	-	.	Parent=Os03t0278566-00
Chr03	irgsp1_rep	mRNA	9480447	9488909	.	+	.	ID=Os03t0278700-01;Name=Os03t0278700-01;Locus_id=Os03g0278700;Note=Hypothetical conserved gene.;Transcript_evidence=AK287594 (DDBJ%2C Best hit);ORF_evidence=Q10N85 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: protein binding (GO:0005515),Molecular Function: N-acetyltransferase activity (GO:0008080),Molecular Function: zinc ion binding (GO:0008270);InterPro=GCN5-related N-acetyltransferase (GNAT) domain (IPR000182),Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Acyl-CoA N-acyltransferase (IPR016181);NIAS_FLcDNA=J065046M01;TENOR=Os03t0278700-01;KEGG=Os03t0278700-01
Chr03	irgsp1_rep	CDS	9480447	9480527	.	+	0	Parent=Os03t0278700-01
Chr03	irgsp1_rep	CDS	9480662	9481008	.	+	0	Parent=Os03t0278700-01
Chr03	irgsp1_rep	CDS	9481239	9481839	.	+	1	Parent=Os03t0278700-01
Chr03	irgsp1_rep	CDS	9481931	9481999	.	+	0	Parent=Os03t0278700-01
Chr03	irgsp1_rep	CDS	9482100	9482298	.	+	0	Parent=Os03t0278700-01
Chr03	irgsp1_rep	CDS	9482408	9482471	.	+	2	Parent=Os03t0278700-01
Chr03	irgsp1_rep	CDS	9482803	9483050	.	+	1	Parent=Os03t0278700-01
Chr03	irgsp1_rep	CDS	9483144	9483219	.	+	2	Parent=Os03t0278700-01
Chr03	irgsp1_rep	CDS	9483333	9483417	.	+	1	Parent=Os03t0278700-01
Chr03	irgsp1_rep	CDS	9483511	9483570	.	+	0	Parent=Os03t0278700-01
Chr03	irgsp1_rep	CDS	9483667	9483725	.	+	0	Parent=Os03t0278700-01
Chr03	irgsp1_rep	CDS	9483825	9483937	.	+	1	Parent=Os03t0278700-01
Chr03	irgsp1_rep	CDS	9486301	9486403	.	+	2	Parent=Os03t0278700-01
Chr03	irgsp1_rep	CDS	9486491	9486548	.	+	1	Parent=Os03t0278700-01
Chr03	irgsp1_rep	CDS	9486675	9486728	.	+	0	Parent=Os03t0278700-01
Chr03	irgsp1_rep	CDS	9486816	9487025	.	+	0	Parent=Os03t0278700-01
Chr03	irgsp1_rep	CDS	9487148	9487206	.	+	0	Parent=Os03t0278700-01
Chr03	irgsp1_rep	CDS	9487330	9487389	.	+	1	Parent=Os03t0278700-01
Chr03	irgsp1_rep	CDS	9487603	9487696	.	+	1	Parent=Os03t0278700-01
Chr03	irgsp1_rep	CDS	9488260	9488400	.	+	0	Parent=Os03t0278700-01
Chr03	irgsp1_rep	CDS	9488532	9488606	.	+	0	Parent=Os03t0278700-01
Chr03	irgsp1_rep	three_prime_UTR	9488607	9488909	.	+	.	Parent=Os03t0278700-01
Chr03	irgsp1_rep	mRNA	9489475	9490784	.	-	.	ID=Os03t0278800-00;Name=Os03t0278800-00;Locus_id=Os03g0278800;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=CU406634 (DDBJ%2C Best hit);ORF_evidence=NP_001150360.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);TENOR=Os03t0278800-00;KEGG=Os03t0278800-00
Chr03	irgsp1_rep	five_prime_UTR	9490741	9490784	.	-	.	Parent=Os03t0278800-00
Chr03	irgsp1_rep	CDS	9490524	9490740	.	-	0	Parent=Os03t0278800-00
Chr03	irgsp1_rep	CDS	9489983	9490051	.	-	2	Parent=Os03t0278800-00
Chr03	irgsp1_rep	CDS	9489639	9489874	.	-	2	Parent=Os03t0278800-00
Chr03	irgsp1_rep	three_prime_UTR	9489475	9489638	.	-	.	Parent=Os03t0278800-00
Chr03	irgsp1_rep	mRNA	9491526	9492494	.	-	.	ID=Os03t0278900-01;Name=Os03t0278900-01;Locus_id=Os03g0278900;Oryzabase Gene Name Synonym(s)=F-type ATPase b%2C ATP synthase subunit b;Note=ATPase%2C F0 complex%2C subunit B/B'%2C bacterial and chloroplast family protein.;Transcript_evidence=AK105925 (DDBJ%2C Best hit),AK066019 (DDBJ%2C Best hit);ORF_evidence=B6T908 (UniProt);GO=Biological Process: ATP synthesis coupled proton transport (GO:0015986),Cellular Component: proton-transporting ATP synthase complex%2C coupling factor F(o) (GO:0045263),Molecular Function: DNA binding (GO:0003677),Molecular Function: hydrogen ion transmembrane transporter activity (GO:0015078);InterPro=ATPase%2C F0 complex%2C subunit B/B&apos%3B%2C bacterial/chloroplast (IPR002146),Tetracycline transcriptional regulator%2C TetR-like%2C C-terminal (IPR015893);NIAS_FLcDNA=001-205-A08,J013049M17;Oryzabase=23756;Expression=AK105925;TENOR=Os03t0278900-01;KEGG=Os03t0278900-01 (EC:3.6.3.14)
Chr03	irgsp1_rep	five_prime_UTR	9492319	9492494	.	-	.	Parent=Os03t0278900-01
Chr03	irgsp1_rep	CDS	9491683	9492318	.	-	0	Parent=Os03t0278900-01
Chr03	irgsp1_rep	three_prime_UTR	9491526	9491682	.	-	.	Parent=Os03t0278900-01
Chr03	irgsp1_rep	mRNA	9492827	9493512	.	+	.	ID=Os03t0279000-00;Name=Os03t0279000-00;Locus_id=Os03g0279000;Note=Similar to Histone H2B.1.;Transcript_evidence=CU406820 (DDBJ%2C Best hit);ORF_evidence=A3AGM4 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H2B (IPR000558),Histone core (IPR007125),Histone-fold (IPR009072);TENOR=Os03t0279000-00;KEGG=Os03t0279000-00
Chr03	irgsp1_rep	five_prime_UTR	9492827	9492889	.	+	.	Parent=Os03t0279000-00
Chr03	irgsp1_rep	CDS	9492890	9493348	.	+	0	Parent=Os03t0279000-00
Chr03	irgsp1_rep	three_prime_UTR	9493349	9493512	.	+	.	Parent=Os03t0279000-00
Chr03	irgsp1_rep	mRNA	9498973	9499826	.	-	.	ID=Os03t0279200-01;Name=Os03t0279200-01;Locus_id=Os03g0279200;Oryzabase Gene Name Synonym(s)=Histone H2A;Note=Similar to Histone H2A.;Transcript_evidence=AK121750 (DDBJ%2C Best hit);ORF_evidence=B7EN17 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H2A (IPR002119),Histone core (IPR007125),Histone-fold (IPR009072);NIAS_FLcDNA=J033087I02;Oryzabase=17629;Expression=AK121750;TENOR=Os03t0279200-01;KEGG=Os03t0279200-01
Chr03	irgsp1_rep	five_prime_UTR	9499738	9499826	.	-	.	Parent=Os03t0279200-01
Chr03	irgsp1_rep	CDS	9499513	9499737	.	-	0	Parent=Os03t0279200-01
Chr03	irgsp1_rep	CDS	9499157	9499411	.	-	0	Parent=Os03t0279200-01
Chr03	irgsp1_rep	three_prime_UTR	9498973	9499156	.	-	.	Parent=Os03t0279200-01
Chr03	irgsp1_rep	mRNA	9507749	9510932	.	-	.	ID=Os03t0279400-01;Name=Os03t0279400-01;Locus_id=Os03g0279400;Note=Similar to predicted protein.;Transcript_evidence=AK106253 (DDBJ%2C Best hit);ORF_evidence=B8AL33 (UniProt);GO=Biological Process: arginine biosynthetic process (GO:0006526),Molecular Function: acetyl-CoA:L-glutamate N-acetyltransferase activity (GO:0004042),Molecular Function: glutamate N-acetyltransferase activity (GO:0004358);InterPro=Arginine biosynthesis protein ArgJ (IPR002813),Peptidase S58 DmpA/arginine biosynthesis protein ArgJ (IPR016117);NIAS_FLcDNA=002-100-E06;Expression=AK106253;TENOR=Os03t0279400-01;KEGG=Os03t0279400-01 (EC:2.3.1.1%2C EC:2.3.1.35)
Chr03	irgsp1_rep	five_prime_UTR	9510835	9510932	.	-	.	Parent=Os03t0279400-01
Chr03	irgsp1_rep	CDS	9510667	9510834	.	-	0	Parent=Os03t0279400-01
Chr03	irgsp1_rep	CDS	9510438	9510561	.	-	0	Parent=Os03t0279400-01
Chr03	irgsp1_rep	CDS	9510097	9510170	.	-	2	Parent=Os03t0279400-01
Chr03	irgsp1_rep	CDS	9509957	9510001	.	-	0	Parent=Os03t0279400-01
Chr03	irgsp1_rep	CDS	9509806	9509856	.	-	0	Parent=Os03t0279400-01
Chr03	irgsp1_rep	CDS	9509657	9509725	.	-	0	Parent=Os03t0279400-01
Chr03	irgsp1_rep	CDS	9509498	9509556	.	-	0	Parent=Os03t0279400-01
Chr03	irgsp1_rep	CDS	9509337	9509406	.	-	1	Parent=Os03t0279400-01
Chr03	irgsp1_rep	CDS	9509166	9509246	.	-	0	Parent=Os03t0279400-01
Chr03	irgsp1_rep	CDS	9508979	9509065	.	-	0	Parent=Os03t0279400-01
Chr03	irgsp1_rep	CDS	9508541	9508663	.	-	0	Parent=Os03t0279400-01
Chr03	irgsp1_rep	CDS	9508220	9508282	.	-	0	Parent=Os03t0279400-01
Chr03	irgsp1_rep	CDS	9507939	9508022	.	-	0	Parent=Os03t0279400-01
Chr03	irgsp1_rep	three_prime_UTR	9507749	9507938	.	-	.	Parent=Os03t0279400-01
Chr03	irgsp1_rep	mRNA	9506763	9510924	.	-	.	ID=Os03t0279400-02;Name=Os03t0279400-02;Locus_id=Os03g0279400;Note=Similar to Arginine biosynthesis bifunctional protein argJ 1 [Includes: Glutamate N-acetyltransferase (EC 2.3.1.35) (Ornithine acetyltransferase) (Ornithine transacetylase) (OATase)%3B Amino-acid acetyltransferase (EC 2.3.1.1) (N-acetylglutamate synthase) (AGS)] [Contains: Arginine biosynthesis bifunctional protein argJ1 alpha chain%3B Arginine biosynthesis bifunctional protein argJ1 beta chain].;Transcript_evidence=AK101851 (DDBJ%2C Best hit);ORF_evidence=B8AL33 (UniProt);GO=Biological Process: arginine biosynthetic process (GO:0006526),Molecular Function: acetyl-CoA:L-glutamate N-acetyltransferase activity (GO:0004042),Molecular Function: glutamate N-acetyltransferase activity (GO:0004358);InterPro=Arginine biosynthesis protein ArgJ (IPR002813),Peptidase S58 DmpA/arginine biosynthesis protein ArgJ (IPR016117);NIAS_FLcDNA=J033069K09;Expression=AK101851;TENOR=Os03t0279400-02;KEGG=Os03t0279400-02 (EC:2.3.1.1%2C EC:2.3.1.35)
Chr03	irgsp1_rep	five_prime_UTR	9510835	9510924	.	-	.	Parent=Os03t0279400-02
Chr03	irgsp1_rep	CDS	9510667	9510834	.	-	0	Parent=Os03t0279400-02
Chr03	irgsp1_rep	CDS	9510438	9510561	.	-	0	Parent=Os03t0279400-02
Chr03	irgsp1_rep	CDS	9510097	9510170	.	-	2	Parent=Os03t0279400-02
Chr03	irgsp1_rep	CDS	9509957	9510001	.	-	0	Parent=Os03t0279400-02
Chr03	irgsp1_rep	CDS	9509806	9509856	.	-	0	Parent=Os03t0279400-02
Chr03	irgsp1_rep	CDS	9509657	9509725	.	-	0	Parent=Os03t0279400-02
Chr03	irgsp1_rep	CDS	9509498	9509556	.	-	0	Parent=Os03t0279400-02
Chr03	irgsp1_rep	CDS	9509337	9509406	.	-	1	Parent=Os03t0279400-02
Chr03	irgsp1_rep	CDS	9509166	9509246	.	-	0	Parent=Os03t0279400-02
Chr03	irgsp1_rep	CDS	9508979	9509065	.	-	0	Parent=Os03t0279400-02
Chr03	irgsp1_rep	CDS	9508541	9508663	.	-	0	Parent=Os03t0279400-02
Chr03	irgsp1_rep	CDS	9508220	9508282	.	-	0	Parent=Os03t0279400-02
Chr03	irgsp1_rep	CDS	9507945	9508022	.	-	0	Parent=Os03t0279400-02
Chr03	irgsp1_rep	CDS	9507693	9507838	.	-	0	Parent=Os03t0279400-02
Chr03	irgsp1_rep	CDS	9507511	9507581	.	-	1	Parent=Os03t0279400-02
Chr03	irgsp1_rep	CDS	9507012	9507094	.	-	2	Parent=Os03t0279400-02
Chr03	irgsp1_rep	three_prime_UTR	9506763	9507011	.	-	.	Parent=Os03t0279400-02
Chr03	irgsp1_rep	mRNA	9513940	9515292	.	-	.	ID=Os03t0279500-00;Name=Os03t0279500-00;Locus_id=Os03g0279500;Oryzabase Gene Symbol Synonym(s)=OsbHLH078;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 078;Note=Similar to Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=EU975058 (DDBJ);ORF_evidence=NP_001173364.1 (RefSeq);InterPro=Helix-loop-helix DNA-binding (IPR011598);Oryzabase=15365;TENOR=Os03t0279500-00;KEGG=Os03t0279500-00
Chr03	irgsp1_rep	five_prime_UTR	9515282	9515292	.	-	.	Parent=Os03t0279500-00
Chr03	irgsp1_rep	CDS	9515165	9515281	.	-	0	Parent=Os03t0279500-00
Chr03	irgsp1_rep	CDS	9514896	9515051	.	-	0	Parent=Os03t0279500-00
Chr03	irgsp1_rep	CDS	9514684	9514761	.	-	0	Parent=Os03t0279500-00
Chr03	irgsp1_rep	CDS	9514491	9514580	.	-	0	Parent=Os03t0279500-00
Chr03	irgsp1_rep	three_prime_UTR	9514465	9514490	.	-	.	Parent=Os03t0279500-00
Chr03	irgsp1_rep	three_prime_UTR	9513940	9514084	.	-	.	Parent=Os03t0279500-00
Chr03	irgsp1_rep	mRNA	9520046	9521110	.	-	.	ID=Os03t0279600-01;Name=Os03t0279600-01;Locus_id=Os03g0279600;Note=Conserved hypothetical protein.;Transcript_evidence=AK103191 (DDBJ%2C Best hit);ORF_evidence=B9F7C5 (UniProt);NIAS_FLcDNA=J033121O10;TENOR=Os03t0279600-01
Chr03	irgsp1_rep	five_prime_UTR	9521008	9521110	.	-	.	Parent=Os03t0279600-01
Chr03	irgsp1_rep	CDS	9520264	9521007	.	-	0	Parent=Os03t0279600-01
Chr03	irgsp1_rep	three_prime_UTR	9520046	9520263	.	-	.	Parent=Os03t0279600-01
Chr03	irgsp1_rep	mRNA	9520046	9521042	.	-	.	ID=Os03t0279600-02;Name=Os03t0279600-02;Locus_id=Os03g0279600;Note=Conserved hypothetical protein.;Transcript_evidence=AK071043 (DDBJ%2C Best hit),AK061080 (DDBJ%2C Best hit);ORF_evidence=B9F7C5 (UniProt);NIAS_FLcDNA=J023079J04,006-206-F02;Expression=AK061080;TENOR=Os03t0279600-02;KEGG=Os03t0279600-02;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	9521008	9521042	.	-	.	Parent=Os03t0279600-02
Chr03	irgsp1_rep	CDS	9520264	9521007	.	-	0	Parent=Os03t0279600-02
Chr03	irgsp1_rep	three_prime_UTR	9520046	9520263	.	-	.	Parent=Os03t0279600-02
Chr03	irgsp1_rep	mRNA	9524919	9525850	.	-	.	ID=Os03t0279700-01;Name=Os03t0279700-01;Locus_id=Os03g0279700;CGSNL Gene Symbol=DLN81;CGSNL Gene Name=DLN REPRESSOR 81;Oryzabase Gene Symbol Synonym(s)=OsDLN81;Oryzabase Gene Name Synonym(s)=DLN repressor 81%2C DLN motif protein 81;Note=Similar to ZPT2-12.;Transcript_evidence=AK111338 (DDBJ%2C Best hit);ORF_evidence=A2XF72 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=002-181-F05;Oryzabase=23180;Expression=AK111338;TENOR=Os03t0279700-01;KEGG=Os03t0279700-01
Chr03	irgsp1_rep	five_prime_UTR	9525760	9525850	.	-	.	Parent=Os03t0279700-01
Chr03	irgsp1_rep	CDS	9525184	9525759	.	-	0	Parent=Os03t0279700-01
Chr03	irgsp1_rep	three_prime_UTR	9524919	9525183	.	-	.	Parent=Os03t0279700-01
Chr03	irgsp1_rep	mRNA	9542963	9547420	.	-	.	ID=Os03t0279801-01;Name=Os03t0279801-01;Locus_id=Os03g0279801;Note=Non-protein coding transcript.;Transcript_evidence=AK318580 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090089L06;TENOR=Os03t0279801-01
Chr03	irgsp1_rep	exon	9542963	9547420	.	-	.	Parent=Os03t0279801-01
Chr03	irgsp1_rep	mRNA	9550310	9550642	.	+	.	ID=Os03t0279816-00;Name=Os03t0279816-00;Locus_id=Os03g0279816;Note=Conserved hypothetical protein.;Transcript_evidence=BT083747 (DDBJ);ORF_evidence=XP_002468079.1 (RefSeq);TENOR=Os03t0279816-00
Chr03	irgsp1_rep	CDS	9550310	9550489	.	+	0	Parent=Os03t0279816-00
Chr03	irgsp1_rep	three_prime_UTR	9550490	9550642	.	+	.	Parent=Os03t0279816-00
Chr03	irgsp1_rep	mRNA	9551782	9552498	.	+	.	ID=Os03t0279832-00;Name=Os03t0279832-00;Locus_id=Os03g0279832;Note=Conserved hypothetical protein.;Transcript_evidence=EU948323 (DDBJ);ORF_evidence=B9F7C8 (UniProt);TENOR=Os03t0279832-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	9551782	9552498	.	+	0	Parent=Os03t0279832-00
Chr03	irgsp1_rep	mRNA	9553187	9555112	.	+	.	ID=Os03t0279900-01;Name=Os03t0279900-01;Locus_id=Os03g0279900;Note=Nitric oxide synthase-interacting domain containing protein.;Transcript_evidence=AK067213 (DDBJ%2C Best hit),AK061631 (DDBJ%2C Best hit);ORF_evidence=B6TCA5 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Nitric oxide synthase-interacting (IPR016818);NIAS_FLcDNA=J013098O13,001-036-A02;Expression=AK067213;TENOR=Os03t0279900-01;KEGG=Os03t0279900-01
Chr03	irgsp1_rep	five_prime_UTR	9553187	9553303	.	+	.	Parent=Os03t0279900-01
Chr03	irgsp1_rep	CDS	9553304	9553542	.	+	0	Parent=Os03t0279900-01
Chr03	irgsp1_rep	CDS	9554290	9554968	.	+	1	Parent=Os03t0279900-01
Chr03	irgsp1_rep	three_prime_UTR	9554969	9555112	.	+	.	Parent=Os03t0279900-01
Chr03	irgsp1_rep	mRNA	9555529	9557358	.	+	.	ID=Os03t0279950-01;Name=Os03t0279950-01;Locus_id=Os03g0279950;Oryzabase Gene Symbol Synonym(s)=PsbP;Oryzabase Gene Name Synonym(s)=Oxygen-evolving complex protein PsbP;Note=Similar to Kinase binding protein (Fragment).;Transcript_evidence=AK241858 (DDBJ%2C Best hit);ORF_evidence=Q0KIW5 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: oxygen evolving complex (GO:0009654),Cellular Component: extrinsic to membrane (GO:0019898),Molecular Function: calcium ion binding (GO:0005509);InterPro=Photosystem II PsbP%2C oxygen evolving complex (IPR002683),Mog1/PsbP%2C alpha/beta/alpha sandwich (IPR016123),Mog1/PsbP/DUF1795%2C alpha/beta/alpha sandwich (IPR016124);NIAS_FLcDNA=J065216D09;Oryzabase=12437;TENOR=Os03t0279950-01;KEGG=Os03t0279950-01
Chr03	irgsp1_rep	five_prime_UTR	9555529	9555593	.	+	.	Parent=Os03t0279950-01
Chr03	irgsp1_rep	CDS	9555594	9555635	.	+	0	Parent=Os03t0279950-01
Chr03	irgsp1_rep	CDS	9555712	9555808	.	+	0	Parent=Os03t0279950-01
Chr03	irgsp1_rep	CDS	9555895	9555976	.	+	2	Parent=Os03t0279950-01
Chr03	irgsp1_rep	CDS	9556120	9556195	.	+	1	Parent=Os03t0279950-01
Chr03	irgsp1_rep	CDS	9556306	9556428	.	+	0	Parent=Os03t0279950-01
Chr03	irgsp1_rep	CDS	9556561	9556632	.	+	0	Parent=Os03t0279950-01
Chr03	irgsp1_rep	CDS	9556766	9556792	.	+	0	Parent=Os03t0279950-01
Chr03	irgsp1_rep	three_prime_UTR	9556793	9556914	.	+	.	Parent=Os03t0279950-01
Chr03	irgsp1_rep	three_prime_UTR	9557068	9557358	.	+	.	Parent=Os03t0279950-01
Chr03	irgsp1_rep	mRNA	9557535	9566491	.	-	.	ID=Os03t0280000-01;Name=Os03t0280000-01;Locus_id=Os03g0280000;CGSNL Gene Symbol=ABCB13;CGSNL Gene Name=ABC TRANSPORTER B FAMILY MEMBER 13;Oryzabase Gene Symbol Synonym(s)=OsABCB13%2C OsPGP13;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCB subgroup member 13%2C P-Glycoprotein 13;Note=Similar to MDR-like ABC transporter.;Transcript_evidence=AK120269 (DDBJ%2C Best hit);ORF_evidence=Q8GU74 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C integral membrane type 1 (IPR017940);NIAS_FLcDNA=J013047J23;Oryzabase=11932;TENOR=Os03t0280000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	9566044	9566491	.	-	.	Parent=Os03t0280000-01
Chr03	irgsp1_rep	CDS	9565633	9566043	.	-	0	Parent=Os03t0280000-01
Chr03	irgsp1_rep	CDS	9564136	9564190	.	-	0	Parent=Os03t0280000-01
Chr03	irgsp1_rep	CDS	9563886	9564061	.	-	2	Parent=Os03t0280000-01
Chr03	irgsp1_rep	CDS	9563585	9563785	.	-	0	Parent=Os03t0280000-01
Chr03	irgsp1_rep	CDS	9562673	9562932	.	-	0	Parent=Os03t0280000-01
Chr03	irgsp1_rep	CDS	9562286	9562596	.	-	1	Parent=Os03t0280000-01
Chr03	irgsp1_rep	CDS	9561984	9562204	.	-	2	Parent=Os03t0280000-01
Chr03	irgsp1_rep	CDS	9561507	9561847	.	-	0	Parent=Os03t0280000-01
Chr03	irgsp1_rep	CDS	9560268	9561055	.	-	1	Parent=Os03t0280000-01
Chr03	irgsp1_rep	CDS	9559913	9560154	.	-	2	Parent=Os03t0280000-01
Chr03	irgsp1_rep	CDS	9557921	9559150	.	-	0	Parent=Os03t0280000-01
Chr03	irgsp1_rep	three_prime_UTR	9557535	9557920	.	-	.	Parent=Os03t0280000-01
Chr03	irgsp1_rep	mRNA	9575359	9576627	.	+	.	ID=Os03t0280400-01;Name=Os03t0280400-01;Locus_id=Os03g0280400;Note=Similar to plant-specific domain TIGR01589 family protein.;Transcript_evidence=AK063845 (DDBJ%2C Best hit);ORF_evidence=NP_001148858.1 (RefSeq);InterPro=Conserved hypothetical protein CHP01589%2C plant (IPR006476);NIAS_FLcDNA=001-122-C05;Expression=AK063845;TENOR=Os03t0280400-01;KEGG=Os03t0280400-01
Chr03	irgsp1_rep	five_prime_UTR	9575359	9575541	.	+	.	Parent=Os03t0280400-01
Chr03	irgsp1_rep	CDS	9575542	9575583	.	+	0	Parent=Os03t0280400-01
Chr03	irgsp1_rep	CDS	9576021	9576126	.	+	0	Parent=Os03t0280400-01
Chr03	irgsp1_rep	CDS	9576244	9576332	.	+	2	Parent=Os03t0280400-01
Chr03	irgsp1_rep	three_prime_UTR	9576333	9576627	.	+	.	Parent=Os03t0280400-01
Chr03	irgsp1_rep	mRNA	9591835	9598423	.	+	.	ID=Os03t0280700-01;Name=Os03t0280700-01;Locus_id=Os03g0280700;Note=Hypothetical conserved gene.;Transcript_evidence=AK242590 (DDBJ%2C Best hit);ORF_evidence=B9F7D1 (UniProt);InterPro=Protein of unknown function DUF3741 (IPR022212);NIAS_FLcDNA=J090011I23;TENOR=Os03t0280700-01;KEGG=Os03t0280700-01
Chr03	irgsp1_rep	five_prime_UTR	9591835	9591981	.	+	.	Parent=Os03t0280700-01
Chr03	irgsp1_rep	CDS	9591982	9592156	.	+	0	Parent=Os03t0280700-01
Chr03	irgsp1_rep	CDS	9594192	9594244	.	+	2	Parent=Os03t0280700-01
Chr03	irgsp1_rep	CDS	9594871	9596898	.	+	0	Parent=Os03t0280700-01
Chr03	irgsp1_rep	CDS	9597160	9597416	.	+	0	Parent=Os03t0280700-01
Chr03	irgsp1_rep	CDS	9597497	9598157	.	+	1	Parent=Os03t0280700-01
Chr03	irgsp1_rep	three_prime_UTR	9598158	9598423	.	+	.	Parent=Os03t0280700-01
Chr03	irgsp1_rep	mRNA	9599365	9600675	.	+	.	ID=Os03t0280750-01;Name=Os03t0280750-01;Locus_id=Os03g0280750;Note=Plant disease resistance response protein family protein.;Transcript_evidence=AK110597 (DDBJ%2C Best hit);ORF_evidence=NP_001150958.1 (RefSeq);InterPro=Plant disease resistance response protein (IPR004265);NIAS_FLcDNA=002-168-G01;Expression=AK110597;TENOR=Os03t0280750-01;KEGG=Os03t0280750-01
Chr03	irgsp1_rep	five_prime_UTR	9599365	9599471	.	+	.	Parent=Os03t0280750-01
Chr03	irgsp1_rep	CDS	9599472	9600428	.	+	0	Parent=Os03t0280750-01
Chr03	irgsp1_rep	three_prime_UTR	9600429	9600675	.	+	.	Parent=Os03t0280750-01
Chr03	irgsp1_rep	mRNA	9600671	9603553	.	-	.	ID=Os03t0280800-01;Name=Os03t0280800-01;Locus_id=Os03g0280800;Oryzabase Gene Symbol Synonym(s)=OsUXS1%2C UXS-1;Oryzabase Gene Name Synonym(s)=UDP-xylose synthase 1%2C UDP-glucuronic acid decarboxylase 1;Note=Similar to UDP-D-glucuronate decarboxylase.;Transcript_evidence=AK071034 (DDBJ%2C Best hit);ORF_evidence=NP_001151221.1 (RefSeq);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023075I12;Oryzabase=18088;Expression=AK071034;TENOR=Os03t0280800-01;KEGG=Os03t0280800-01 (EC:4.2.1.46)
Chr03	irgsp1_rep	five_prime_UTR	9603474	9603553	.	-	.	Parent=Os03t0280800-01
Chr03	irgsp1_rep	CDS	9602888	9603473	.	-	0	Parent=Os03t0280800-01
Chr03	irgsp1_rep	CDS	9602503	9602649	.	-	2	Parent=Os03t0280800-01
Chr03	irgsp1_rep	CDS	9602295	9602374	.	-	2	Parent=Os03t0280800-01
Chr03	irgsp1_rep	CDS	9601629	9601712	.	-	0	Parent=Os03t0280800-01
Chr03	irgsp1_rep	CDS	9601459	9601533	.	-	0	Parent=Os03t0280800-01
Chr03	irgsp1_rep	CDS	9601246	9601338	.	-	0	Parent=Os03t0280800-01
Chr03	irgsp1_rep	CDS	9600934	9601128	.	-	0	Parent=Os03t0280800-01
Chr03	irgsp1_rep	three_prime_UTR	9600671	9600933	.	-	.	Parent=Os03t0280800-01
Chr03	irgsp1_rep	mRNA	9600935	9603459	.	+	.	ID=Os03t0280900-00;Name=Os03t0280900-00;Locus_id=Os03g0280900;Note=Hypothetical protein.;Transcript_evidence=tplb0036f05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0280900-00
Chr03	irgsp1_rep	five_prime_UTR	9600935	9601114	.	+	.	Parent=Os03t0280900-00
Chr03	irgsp1_rep	five_prime_UTR	9601232	9601321	.	+	.	Parent=Os03t0280900-00
Chr03	irgsp1_rep	five_prime_UTR	9601444	9601520	.	+	.	Parent=Os03t0280900-00
Chr03	irgsp1_rep	five_prime_UTR	9601609	9601737	.	+	.	Parent=Os03t0280900-00
Chr03	irgsp1_rep	five_prime_UTR	9602454	9602645	.	+	.	Parent=Os03t0280900-00
Chr03	irgsp1_rep	five_prime_UTR	9602884	9602970	.	+	.	Parent=Os03t0280900-00
Chr03	irgsp1_rep	CDS	9602971	9603315	.	+	0	Parent=Os03t0280900-00
Chr03	irgsp1_rep	three_prime_UTR	9603316	9603459	.	+	.	Parent=Os03t0280900-00
Chr03	irgsp1_rep	mRNA	9605184	9608335	.	+	.	ID=Os03t0281000-01;Name=Os03t0281000-01;Locus_id=Os03g0281000;Note=Similar to Ankyrin-like protein.;Transcript_evidence=AK100495 (DDBJ%2C Best hit);ORF_evidence=NP_001147449.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J023099A04;Expression=AK100495;TENOR=Os03t0281000-01;KEGG=Os03t0281000-01
Chr03	irgsp1_rep	five_prime_UTR	9605184	9605389	.	+	.	Parent=Os03t0281000-01
Chr03	irgsp1_rep	CDS	9605390	9605411	.	+	0	Parent=Os03t0281000-01
Chr03	irgsp1_rep	CDS	9605530	9606312	.	+	2	Parent=Os03t0281000-01
Chr03	irgsp1_rep	CDS	9606648	9607057	.	+	2	Parent=Os03t0281000-01
Chr03	irgsp1_rep	CDS	9607140	9607973	.	+	0	Parent=Os03t0281000-01
Chr03	irgsp1_rep	three_prime_UTR	9607974	9608335	.	+	.	Parent=Os03t0281000-01
Chr03	irgsp1_rep	mRNA	9611073	9612943	.	+	.	ID=Os03t0281100-00;Name=Os03t0281100-00;Locus_id=Os03g0281100;Oryzabase Gene Symbol Synonym(s)=OsSTA96;Note=Ankyrin repeat containing protein.;Transcript_evidence=BT086250 (DDBJ);ORF_evidence=NP_172250.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);Oryzabase=19392;TENOR=Os03t0281100-00;KEGG=Os03t0281100-00
Chr03	irgsp1_rep	five_prime_UTR	9611073	9611113	.	+	.	Parent=Os03t0281100-00
Chr03	irgsp1_rep	CDS	9611114	9611516	.	+	0	Parent=Os03t0281100-00
Chr03	irgsp1_rep	CDS	9611635	9612929	.	+	2	Parent=Os03t0281100-00
Chr03	irgsp1_rep	three_prime_UTR	9612930	9612943	.	+	.	Parent=Os03t0281100-00
Chr03	irgsp1_rep	mRNA	9617509	9618641	.	-	.	ID=Os03t0281201-01;Name=Os03t0281201-01;Locus_id=Os03g0281201;Note=Conserved hypothetical protein.;Transcript_evidence=AK287938 (DDBJ%2C Best hit);ORF_evidence=Q10N64 (UniProt);NIAS_FLcDNA=J075006M22;TENOR=Os03t0281201-01;KEGG=Os03t0281201-01
Chr03	irgsp1_rep	five_prime_UTR	9618549	9618641	.	-	.	Parent=Os03t0281201-01
Chr03	irgsp1_rep	CDS	9617592	9618548	.	-	0	Parent=Os03t0281201-01
Chr03	irgsp1_rep	three_prime_UTR	9617509	9617591	.	-	.	Parent=Os03t0281201-01
Chr03	irgsp1_rep	mRNA	9619836	9628261	.	-	.	ID=Os03t0281300-01;Name=Os03t0281300-01;Locus_id=Os03g0281300;Note=phosphotransferase system%2C PEP-utilising enzyme%2C N-terminal domain containing protein.;Transcript_evidence=AK072918 (DDBJ%2C Best hit),AK107060 (DDBJ%2C Best hit);ORF_evidence=B8ALH8 (UniProt);NIAS_FLcDNA=J023149C16,002-121-D12;TENOR=Os03t0281300-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	9628095	9628261	.	-	.	Parent=Os03t0281300-01
Chr03	irgsp1_rep	CDS	9627945	9628094	.	-	0	Parent=Os03t0281300-01
Chr03	irgsp1_rep	CDS	9627675	9627866	.	-	0	Parent=Os03t0281300-01
Chr03	irgsp1_rep	CDS	9627481	9627576	.	-	0	Parent=Os03t0281300-01
Chr03	irgsp1_rep	CDS	9627315	9627367	.	-	0	Parent=Os03t0281300-01
Chr03	irgsp1_rep	CDS	9627093	9627189	.	-	1	Parent=Os03t0281300-01
Chr03	irgsp1_rep	CDS	9626800	9626873	.	-	0	Parent=Os03t0281300-01
Chr03	irgsp1_rep	CDS	9626595	9626700	.	-	1	Parent=Os03t0281300-01
Chr03	irgsp1_rep	CDS	9625924	9626035	.	-	0	Parent=Os03t0281300-01
Chr03	irgsp1_rep	CDS	9625679	9625754	.	-	2	Parent=Os03t0281300-01
Chr03	irgsp1_rep	CDS	9625326	9625392	.	-	1	Parent=Os03t0281300-01
Chr03	irgsp1_rep	CDS	9623976	9624041	.	-	0	Parent=Os03t0281300-01
Chr03	irgsp1_rep	CDS	9621560	9621667	.	-	0	Parent=Os03t0281300-01
Chr03	irgsp1_rep	CDS	9621330	9621460	.	-	0	Parent=Os03t0281300-01
Chr03	irgsp1_rep	CDS	9621124	9621190	.	-	1	Parent=Os03t0281300-01
Chr03	irgsp1_rep	CDS	9620964	9621031	.	-	0	Parent=Os03t0281300-01
Chr03	irgsp1_rep	CDS	9620784	9620877	.	-	1	Parent=Os03t0281300-01
Chr03	irgsp1_rep	CDS	9620574	9620644	.	-	0	Parent=Os03t0281300-01
Chr03	irgsp1_rep	CDS	9619990	9620326	.	-	1	Parent=Os03t0281300-01
Chr03	irgsp1_rep	three_prime_UTR	9619836	9619989	.	-	.	Parent=Os03t0281300-01
Chr03	irgsp1_rep	mRNA	9632645	9635529	.	-	.	ID=Os03t0281466-01;Name=Os03t0281466-01;Locus_id=Os03g0281466;CGSNL Gene Symbol=PI68;CGSNL Gene Name=PYRICULARIA ORYZAE RESISTANCE 68;Oryzabase Gene Symbol Synonym(s)=Pi68(t)%2C Pi68;Oryzabase Gene Name Synonym(s)=Magnaporthe grisea resistance-68%2C Blast resistance 68%2C malectin-serine threonine kinase;Note=Hypothetical protein;Transcript_evidence=AK241347 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065148C15;Manual Curation=September 28%2C 2017;Oryzabase=23619;TENOR=Os03t0281466-01;KEGG=Os03t0281466-01
Chr03	irgsp1_rep	five_prime_UTR	9634718	9635529	.	-	.	Parent=Os03t0281466-01
Chr03	irgsp1_rep	CDS	9634079	9634717	.	-	0	Parent=Os03t0281466-01
Chr03	irgsp1_rep	three_prime_UTR	9632645	9634078	.	-	.	Parent=Os03t0281466-01
Chr03	irgsp1_rep	mRNA	9632806	9635793	.	+	.	ID=Os03t0281500-01;Name=Os03t0281500-01;Locus_id=Os03g0281500;RAP-DB Gene Symbol Synonym(s)=OsCrRLK1L7;RAP-DB Gene Name Synonym(s)=Catharanthus roseus receptor-like kinase1-like kinase 7;Oryzabase Gene Symbol Synonym(s)=OsCrRLK1L7;Oryzabase Gene Name Synonym(s)=Catharanthus roseus receptor-like kinase1-like kinase 7;Note=Catharanthus roseus receptor-like kinase1-like kinase;Transcript_evidence=AK100137;ORF_evidence=Q10N60;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=CytoChrome c1%2C transmembrane anchor%2C C-terminal (IPR021157),Protein kinase-like domain superfamily (IPR011009),Malectin-like carbohydrate-binding domain (IPR024788),Protein kinase domain (IPR000719),Serine-threonine/tyrosine-protein kinase%2C catalytic domain (IPR001245),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J023010L23;Manual Curation=October 2%2C 2017;Literature_PMID=25399351;Oryzabase=18676;Expression=AK100137;TENOR=Os03t0281500-01;KEGG=Os03t0281500-01
Chr03	irgsp1_rep	five_prime_UTR	9632806	9633011	.	+	.	Parent=Os03t0281500-01
Chr03	irgsp1_rep	CDS	9633012	9635531	.	+	0	Parent=Os03t0281500-01
Chr03	irgsp1_rep	three_prime_UTR	9635532	9635793	.	+	.	Parent=Os03t0281500-01
Chr03	irgsp1_rep	mRNA	9635957	9642093	.	-	.	ID=Os03t0281600-01;Name=Os03t0281600-01;Locus_id=Os03g0281600;RAP-DB Gene Symbol Synonym(s)=OsECA1;RAP-DB Gene Name Synonym(s)=endoplasmic reticulum-type Ca<sup>2+</sup> -ATPase 1;CGSNL Gene Symbol=ECA1;CGSNL Gene Name=ENDOPLASMIC RETICULUM-TYPE CA2+-ATPASE1;Oryzabase Gene Symbol Synonym(s)=osECA1%2C OsECA1;Oryzabase Gene Name Synonym(s)=endoplasmic reticulum-type Ca2+ P-Type ATPase 1;Note=Endoplasmic reticulum-type Ca<sup>2+</sup> -ATPase;Transcript_evidence=AK070260 (truncated),AK105840 (truncated),Inferred from literature;ORF_evidence=Q8H8W1;GO=Molecular Function: nucleotide binding (GO:0000166),Cellular Component: integral component of membrane (GO:0016021);InterPro=P-type ATPase%2C transmembrane domain superfamily (IPR023298),P-type ATPase%2C A domain superfamily (IPR008250),P-type ATPase%2C cytoplasmic domain N (IPR023299),HAD-like superfamily (IPR036412),P-type ATPase (IPR001757),Cation-transporting P-type ATPase%2C N-terminal (IPR004014),Cation-transporting P-type ATPase%2C C-terminal (IPR006068),P-type ATPase%2C phosphorylation site (IPR018303);NIAS_FLcDNA=J023045A10 (truncated),001-203-F07 (truncated);Manual Curation=September 28%2C 2017;Literature_PMID=12805592;Oryzabase=13231;Expression=AK105840;TENOR=Os03t0281600-01;KEGG=Os03t0281600-01 (EC:3.6.3.8);B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	9641901	9642093	.	-	.	Parent=Os03t0281600-01
Chr03	irgsp1_rep	CDS	9640476	9641900	.	-	0	Parent=Os03t0281600-01
Chr03	irgsp1_rep	CDS	9640163	9640229	.	-	0	Parent=Os03t0281600-01
Chr03	irgsp1_rep	CDS	9639938	9640062	.	-	2	Parent=Os03t0281600-01
Chr03	irgsp1_rep	CDS	9639274	9639552	.	-	0	Parent=Os03t0281600-01
Chr03	irgsp1_rep	CDS	9638792	9639169	.	-	0	Parent=Os03t0281600-01
Chr03	irgsp1_rep	CDS	9637796	9637905	.	-	0	Parent=Os03t0281600-01
Chr03	irgsp1_rep	CDS	9637465	9637693	.	-	1	Parent=Os03t0281600-01
Chr03	irgsp1_rep	CDS	9636211	9636786	.	-	0	Parent=Os03t0281600-01
Chr03	irgsp1_rep	five_prime_UTR	9635957	9636210	.	-	.	Parent=Os03t0281600-01
Chr03	irgsp1_rep	mRNA	9646913	9651687	.	-	.	ID=Os03t0281800-01;Name=Os03t0281800-01;Locus_id=Os03g0281800;Note=Conserved hypothetical protein.;Transcript_evidence=AK067596 (DDBJ%2C Best hit);ORF_evidence=Q8H8V8 (UniProt);NIAS_FLcDNA=J013111G02;TENOR=Os03t0281800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	9651601	9651687	.	-	.	Parent=Os03t0281800-01
Chr03	irgsp1_rep	CDS	9651223	9651600	.	-	0	Parent=Os03t0281800-01
Chr03	irgsp1_rep	CDS	9651069	9651089	.	-	0	Parent=Os03t0281800-01
Chr03	irgsp1_rep	three_prime_UTR	9651010	9651068	.	-	.	Parent=Os03t0281800-01
Chr03	irgsp1_rep	three_prime_UTR	9650408	9650618	.	-	.	Parent=Os03t0281800-01
Chr03	irgsp1_rep	three_prime_UTR	9650114	9650305	.	-	.	Parent=Os03t0281800-01
Chr03	irgsp1_rep	three_prime_UTR	9649170	9649310	.	-	.	Parent=Os03t0281800-01
Chr03	irgsp1_rep	three_prime_UTR	9648879	9648965	.	-	.	Parent=Os03t0281800-01
Chr03	irgsp1_rep	three_prime_UTR	9647951	9648396	.	-	.	Parent=Os03t0281800-01
Chr03	irgsp1_rep	three_prime_UTR	9647311	9647830	.	-	.	Parent=Os03t0281800-01
Chr03	irgsp1_rep	three_prime_UTR	9646913	9647218	.	-	.	Parent=Os03t0281800-01
Chr03	irgsp1_rep	mRNA	9654333	9657024	.	+	.	ID=Os03t0281900-01;Name=Os03t0281900-01;Locus_id=Os03g0281900;RAP-DB Gene Symbol Synonym(s)=ABCG5%2C OsABCG5%2C RCN1/OsABCG5;RAP-DB Gene Name Synonym(s)=ABC TRANSPORTER G FAMILY MEMBER 5%2C ATP-binding cassette protein subfamily G member 5%2C ABC transporter superfamily ABCG subgroup member 5;CGSNL Gene Symbol=ABCG5;CGSNL Gene Name=ABC TRANSPORTER G FAMILY MEMBER 5;Oryzabase Gene Symbol Synonym(s)=OsABCG5;Oryzabase Gene Name Synonym(s)=ATP-binding cassette protein subfamily G member 5%2C ABC transporter superfamily ABCG subgroup member 5;Note=ATP-binding cassette (ABC) transporter%2C Hypodermal suberization of roots%2C Salt stress tolerance;Transcript_evidence=AK072135;ORF_evidence=Q8H8V7;GO=Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Cellular Component: membrane (GO:0016020);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),ABC transporter-like (IPR003439),AAA+ ATPase domain (IPR003593),ABC-2 type transporter (IPR013525),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=J013128L10;Manual Curation=January 15%2C 2015;Literature_PMID=25041515,24908511;Oryzabase=9703;TENOR=Os03t0281900-01;KEGG=Os03t0281900-01
Chr03	irgsp1_rep	five_prime_UTR	9654333	9654374	.	+	.	Parent=Os03t0281900-01
Chr03	irgsp1_rep	CDS	9654375	9656738	.	+	0	Parent=Os03t0281900-01
Chr03	irgsp1_rep	three_prime_UTR	9656739	9657024	.	+	.	Parent=Os03t0281900-01
Chr03	irgsp1_rep	mRNA	9664896	9667255	.	+	.	ID=Os03t0282100-00;Name=Os03t0282100-00;Locus_id=Os03g0282100;CGSNL Gene Symbol=ABCG6;CGSNL Gene Name=ABC TRANSPORTER G FAMILY MEMBER 6;Oryzabase Gene Symbol Synonym(s)=OsABCG6;Oryzabase Gene Name Synonym(s)=ATP-binding cassette protein subfamily G member 6%2C ABC transporter superfamily ABCG subgroup member 6;Note=Similar to ATPase%2C coupled to transmembrane movement of substances.;Transcript_evidence=AK331396 (DDBJ);ORF_evidence=NP_001151504.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C conserved site (IPR017871);Oryzabase=9704;TENOR=Os03t0282100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	9664896	9666078	.	+	0	Parent=Os03t0282100-00
Chr03	irgsp1_rep	CDS	9666138	9667255	.	+	2	Parent=Os03t0282100-00
Chr03	irgsp1_rep	mRNA	9665319	9666999	.	-	.	ID=Os03t0282166-00;Name=Os03t0282166-00;Locus_id=Os03g0282166;Note=Hypothetical protein.;Transcript_evidence=AK361241 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0282166-00
Chr03	irgsp1_rep	five_prime_UTR	9666455	9666999	.	-	.	Parent=Os03t0282166-00
Chr03	irgsp1_rep	CDS	9666104	9666454	.	-	0	Parent=Os03t0282166-00
Chr03	irgsp1_rep	CDS	9665319	9666005	.	-	0	Parent=Os03t0282166-00
Chr03	irgsp1_rep	mRNA	9680890	9681390	.	-	.	ID=Os03t0282232-00;Name=Os03t0282232-00;Locus_id=Os03g0282232;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9F7D7 (UniProt);TENOR=Os03t0282232-00
Chr03	irgsp1_rep	CDS	9680890	9681390	.	-	0	Parent=Os03t0282232-00
Chr03	irgsp1_rep	mRNA	9683383	9684918	.	-	.	ID=Os03t0282300-00;Name=Os03t0282300-00;Locus_id=Os03g0282300;Note=Hypothetical conserved gene.;Transcript_evidence=BT038365 (DDBJ);ORF_evidence=B9F7D7 (UniProt);TENOR=Os03t0282300-00;KEGG=Os03t0282300-00
Chr03	irgsp1_rep	five_prime_UTR	9684864	9684918	.	-	.	Parent=Os03t0282300-00
Chr03	irgsp1_rep	CDS	9684840	9684863	.	-	0	Parent=Os03t0282300-00
Chr03	irgsp1_rep	CDS	9683591	9684748	.	-	0	Parent=Os03t0282300-00
Chr03	irgsp1_rep	three_prime_UTR	9683383	9683590	.	-	.	Parent=Os03t0282300-00
Chr03	irgsp1_rep	mRNA	9699177	9700391	.	+	.	ID=Os03t0282700-00;Name=Os03t0282700-00;Locus_id=Os03g0282700;Oryzabase Gene Symbol Synonym(s)=mog-4;Note=DEAD-like helicase%2C N-terminal domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8H8U9 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524);InterPro=Helicase%2C C-terminal (IPR001650),DEAD-like helicase (IPR014001);Oryzabase=19164;TENOR=Os03t0282700-00;KEGG=Os03t0282700-00 (EC:3.6.4.13)
Chr03	irgsp1_rep	CDS	9699177	9700391	.	+	0	Parent=Os03t0282700-00
Chr03	irgsp1_rep	mRNA	9700521	9703425	.	-	.	ID=Os03t0282800-01;Name=Os03t0282800-01;Locus_id=Os03g0282800;Note=Conserved hypothetical protein.;Transcript_evidence=AK101658 (DDBJ%2C Best hit);ORF_evidence=B8ALI3 (UniProt);NIAS_FLcDNA=J033057I20;Expression=AK101658;TENOR=Os03t0282800-01;KEGG=Os03t0282800-01
Chr03	irgsp1_rep	five_prime_UTR	9703273	9703425	.	-	.	Parent=Os03t0282800-01
Chr03	irgsp1_rep	CDS	9703191	9703272	.	-	0	Parent=Os03t0282800-01
Chr03	irgsp1_rep	CDS	9701478	9701653	.	-	2	Parent=Os03t0282800-01
Chr03	irgsp1_rep	CDS	9701200	9701386	.	-	0	Parent=Os03t0282800-01
Chr03	irgsp1_rep	CDS	9700756	9700985	.	-	2	Parent=Os03t0282800-01
Chr03	irgsp1_rep	three_prime_UTR	9700521	9700755	.	-	.	Parent=Os03t0282800-01
Chr03	irgsp1_rep	mRNA	9703697	9707178	.	+	.	ID=Os03t0282900-01;Name=Os03t0282900-01;Locus_id=Os03g0282900;Note=Conserved hypothetical protein.;Transcript_evidence=AK102161 (DDBJ%2C Best hit),AK061166 (DDBJ%2C Best hit);ORF_evidence=B8ALI4 (UniProt);NIAS_FLcDNA=J033086G07,006-209-A08;TENOR=Os03t0282900-01
Chr03	irgsp1_rep	five_prime_UTR	9703697	9703821	.	+	.	Parent=Os03t0282900-01
Chr03	irgsp1_rep	CDS	9703822	9704017	.	+	0	Parent=Os03t0282900-01
Chr03	irgsp1_rep	CDS	9704451	9704607	.	+	2	Parent=Os03t0282900-01
Chr03	irgsp1_rep	CDS	9705482	9705563	.	+	1	Parent=Os03t0282900-01
Chr03	irgsp1_rep	CDS	9705653	9705700	.	+	0	Parent=Os03t0282900-01
Chr03	irgsp1_rep	CDS	9706460	9706560	.	+	0	Parent=Os03t0282900-01
Chr03	irgsp1_rep	CDS	9706765	9706897	.	+	1	Parent=Os03t0282900-01
Chr03	irgsp1_rep	three_prime_UTR	9706898	9707178	.	+	.	Parent=Os03t0282900-01
Chr03	irgsp1_rep	mRNA	9703719	9707167	.	+	.	ID=Os03t0282900-02;Name=Os03t0282900-02;Locus_id=Os03g0282900;Note=Conserved hypothetical protein.;Transcript_evidence=AK104514 (DDBJ%2C Best hit);ORF_evidence=B8ALI4 (UniProt);NIAS_FLcDNA=006-303-B01;Expression=AK104514;TENOR=Os03t0282900-02;KEGG=Os03t0282900-02
Chr03	irgsp1_rep	five_prime_UTR	9703719	9703821	.	+	.	Parent=Os03t0282900-02
Chr03	irgsp1_rep	CDS	9703822	9704017	.	+	0	Parent=Os03t0282900-02
Chr03	irgsp1_rep	CDS	9704451	9704607	.	+	2	Parent=Os03t0282900-02
Chr03	irgsp1_rep	CDS	9705482	9705563	.	+	1	Parent=Os03t0282900-02
Chr03	irgsp1_rep	CDS	9705653	9705700	.	+	0	Parent=Os03t0282900-02
Chr03	irgsp1_rep	CDS	9706460	9706560	.	+	0	Parent=Os03t0282900-02
Chr03	irgsp1_rep	CDS	9706765	9706897	.	+	1	Parent=Os03t0282900-02
Chr03	irgsp1_rep	three_prime_UTR	9706898	9707167	.	+	.	Parent=Os03t0282900-02
Chr03	irgsp1_rep	mRNA	9708208	9710092	.	-	.	ID=Os03t0283000-00;Name=Os03t0283000-00;Locus_id=Os03g0283000;CGSNL Gene Symbol=GSTL3;CGSNL Gene Name=LAMBDA GLUTATHIONE S-TRANSFERASE 3;Oryzabase Gene Symbol Synonym(s)=OsGSTL3;Oryzabase Gene Name Synonym(s)=lambda class glutathione S-transferase 3;Note=Similar to In2-1 protein.;Transcript_evidence=AY332468 (DDBJ%2C Best hit);ORF_evidence=Q8H8U5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336);Oryzabase=9461;Expression=AY332468;TENOR=Os03t0283000-00;KEGG=Os03t0283000-00
Chr03	irgsp1_rep	five_prime_UTR	9710055	9710092	.	-	.	Parent=Os03t0283000-00
Chr03	irgsp1_rep	CDS	9709908	9710054	.	-	0	Parent=Os03t0283000-00
Chr03	irgsp1_rep	CDS	9709721	9709804	.	-	0	Parent=Os03t0283000-00
Chr03	irgsp1_rep	CDS	9709546	9709644	.	-	0	Parent=Os03t0283000-00
Chr03	irgsp1_rep	CDS	9709358	9709466	.	-	0	Parent=Os03t0283000-00
Chr03	irgsp1_rep	CDS	9709183	9709259	.	-	2	Parent=Os03t0283000-00
Chr03	irgsp1_rep	CDS	9708987	9709094	.	-	0	Parent=Os03t0283000-00
Chr03	irgsp1_rep	CDS	9708807	9708887	.	-	0	Parent=Os03t0283000-00
Chr03	irgsp1_rep	CDS	9708366	9708545	.	-	0	Parent=Os03t0283000-00
Chr03	irgsp1_rep	three_prime_UTR	9708208	9708365	.	-	.	Parent=Os03t0283000-00
Chr03	irgsp1_rep	mRNA	9712224	9714920	.	-	.	ID=Os03t0283100-01;Name=Os03t0283100-01;Locus_id=Os03g0283100;RAP-DB Gene Symbol Synonym(s)=OsGSTL2;RAP-DB Gene Name Synonym(s)=lambda class glutathione S-transferase 2;CGSNL Gene Symbol=GSTL2;CGSNL Gene Name=LAMBDA GLUTATHIONE S-TRANSFERASE 2;Oryzabase Gene Symbol Synonym(s)=OsGSTL2;Oryzabase Gene Name Synonym(s)=lambda class glutathione S-transferase 2;Note=Lambda class glutathione S-transferase%2C Maize In2-1 homologue%2C Detoxification of some chemical compounds;Transcript_evidence=AK065887;ORF_evidence=Q8H8U5;GO=Molecular Function: protein binding (GO:0005515);InterPro=Thioredoxin-like superfamily (IPR036249),Glutathione S-transferase%2C C-terminal domain superfamily (IPR036282),Glutathione Transferase family (IPR040079),Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal-like (IPR010987);NIAS_FLcDNA=J013044J05;Manual Curation=September 1%2C 2020;Literature_PMID=21899054;Oryzabase=9460;Expression=AK065887;TENOR=Os03t0283100-01;KEGG=Os03t0283100-01
Chr03	irgsp1_rep	five_prime_UTR	9714749	9714920	.	-	.	Parent=Os03t0283100-01
Chr03	irgsp1_rep	CDS	9714720	9714748	.	-	0	Parent=Os03t0283100-01
Chr03	irgsp1_rep	CDS	9714540	9714614	.	-	1	Parent=Os03t0283100-01
Chr03	irgsp1_rep	CDS	9714348	9714408	.	-	1	Parent=Os03t0283100-01
Chr03	irgsp1_rep	CDS	9714102	9714188	.	-	0	Parent=Os03t0283100-01
Chr03	irgsp1_rep	CDS	9713590	9713688	.	-	0	Parent=Os03t0283100-01
Chr03	irgsp1_rep	CDS	9713389	9713497	.	-	0	Parent=Os03t0283100-01
Chr03	irgsp1_rep	CDS	9713201	9713277	.	-	2	Parent=Os03t0283100-01
Chr03	irgsp1_rep	CDS	9712979	9713086	.	-	0	Parent=Os03t0283100-01
Chr03	irgsp1_rep	CDS	9712699	9712779	.	-	0	Parent=Os03t0283100-01
Chr03	irgsp1_rep	CDS	9712567	9712575	.	-	0	Parent=Os03t0283100-01
Chr03	irgsp1_rep	three_prime_UTR	9712224	9712566	.	-	.	Parent=Os03t0283100-01
Chr03	irgsp1_rep	mRNA	9712322	9714797	.	-	.	ID=Os03t0283100-02;Name=Os03t0283100-02;Locus_id=Os03g0283100;CGSNL Gene Symbol=GSTL2;CGSNL Gene Name=LAMBDA GLUTATHIONE S-TRANSFERASE 2;Oryzabase Gene Symbol Synonym(s)=OsGSTL2;Oryzabase Gene Name Synonym(s)=lambda class glutathione S-transferase 2;Note=Similar to In2-1 protein.;Transcript_evidence=AK061849 (DDBJ%2C Best hit);ORF_evidence=Q8H8U5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=001-040-F06;Oryzabase=9460;Expression=AK061849;TENOR=Os03t0283100-02;KEGG=Os03t0283100-02
Chr03	irgsp1_rep	five_prime_UTR	9714749	9714797	.	-	.	Parent=Os03t0283100-02
Chr03	irgsp1_rep	CDS	9714720	9714748	.	-	0	Parent=Os03t0283100-02
Chr03	irgsp1_rep	CDS	9714540	9714614	.	-	1	Parent=Os03t0283100-02
Chr03	irgsp1_rep	CDS	9714348	9714408	.	-	1	Parent=Os03t0283100-02
Chr03	irgsp1_rep	CDS	9714102	9714188	.	-	0	Parent=Os03t0283100-02
Chr03	irgsp1_rep	CDS	9713590	9713688	.	-	0	Parent=Os03t0283100-02
Chr03	irgsp1_rep	CDS	9713389	9713497	.	-	0	Parent=Os03t0283100-02
Chr03	irgsp1_rep	CDS	9713201	9713277	.	-	2	Parent=Os03t0283100-02
Chr03	irgsp1_rep	CDS	9712979	9713086	.	-	0	Parent=Os03t0283100-02
Chr03	irgsp1_rep	CDS	9712699	9712779	.	-	0	Parent=Os03t0283100-02
Chr03	irgsp1_rep	CDS	9712567	9712575	.	-	0	Parent=Os03t0283100-02
Chr03	irgsp1_rep	three_prime_UTR	9712322	9712566	.	-	.	Parent=Os03t0283100-02
Chr03	irgsp1_rep	mRNA	9717253	9719884	.	-	.	ID=Os03t0283200-00;Name=Os03t0283200-00;Locus_id=Os03g0283200;CGSNL Gene Symbol=GSTL1;CGSNL Gene Name=LAMBDA GLUTATHIONE S-TRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=OsGSTL1;Oryzabase Gene Name Synonym(s)=lambda class glutathione S-transferase 1%2C glutathione S-transferase lambda 1;Note=Similar to IN2-1 protein.;Transcript_evidence=AF237487 (DDBJ%2C Best hit);ORF_evidence=NP_001105433.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);Oryzabase=9459;Expression=AF237487;TENOR=Os03t0283200-00;KEGG=Os03t0283200-00 (EC:2.5.1.18)
Chr03	irgsp1_rep	five_prime_UTR	9719856	9719884	.	-	.	Parent=Os03t0283200-00
Chr03	irgsp1_rep	CDS	9719830	9719855	.	-	0	Parent=Os03t0283200-00
Chr03	irgsp1_rep	CDS	9719633	9719707	.	-	1	Parent=Os03t0283200-00
Chr03	irgsp1_rep	CDS	9719464	9719524	.	-	1	Parent=Os03t0283200-00
Chr03	irgsp1_rep	CDS	9719262	9719348	.	-	0	Parent=Os03t0283200-00
Chr03	irgsp1_rep	CDS	9719056	9719154	.	-	0	Parent=Os03t0283200-00
Chr03	irgsp1_rep	CDS	9718785	9718893	.	-	0	Parent=Os03t0283200-00
Chr03	irgsp1_rep	CDS	9718409	9718485	.	-	2	Parent=Os03t0283200-00
Chr03	irgsp1_rep	CDS	9717638	9717827	.	-	0	Parent=Os03t0283200-00
Chr03	irgsp1_rep	CDS	9717537	9717544	.	-	2	Parent=Os03t0283200-00
Chr03	irgsp1_rep	three_prime_UTR	9717253	9717536	.	-	.	Parent=Os03t0283200-00
Chr03	irgsp1_rep	mRNA	9721925	9725003	.	+	.	ID=Os03t0283300-01;Name=Os03t0283300-01;Locus_id=Os03g0283300;Note=Conserved hypothetical protein.;Transcript_evidence=AK070169 (DDBJ%2C Best hit);ORF_evidence=Q10N42 (UniProt);NIAS_FLcDNA=J023042P16;Expression=AK070169;TENOR=Os03t0283300-01;KEGG=Os03t0283300-01
Chr03	irgsp1_rep	five_prime_UTR	9721925	9722024	.	+	.	Parent=Os03t0283300-01
Chr03	irgsp1_rep	CDS	9722025	9722278	.	+	0	Parent=Os03t0283300-01
Chr03	irgsp1_rep	CDS	9723967	9724029	.	+	1	Parent=Os03t0283300-01
Chr03	irgsp1_rep	CDS	9724129	9724251	.	+	1	Parent=Os03t0283300-01
Chr03	irgsp1_rep	CDS	9724342	9724399	.	+	1	Parent=Os03t0283300-01
Chr03	irgsp1_rep	CDS	9724478	9724513	.	+	0	Parent=Os03t0283300-01
Chr03	irgsp1_rep	three_prime_UTR	9724514	9724539	.	+	.	Parent=Os03t0283300-01
Chr03	irgsp1_rep	three_prime_UTR	9724627	9725003	.	+	.	Parent=Os03t0283300-01
Chr03	irgsp1_rep	mRNA	9725291	9727472	.	-	.	ID=Os03t0283400-01;Name=Os03t0283400-01;Locus_id=Os03g0283400;Note=Conserved hypothetical protein.;Transcript_evidence=AK064670 (DDBJ%2C Best hit);ORF_evidence=B9F7E1 (UniProt);NIAS_FLcDNA=002-115-E02;Expression=AK064670;TENOR=Os03t0283400-01;KEGG=Os03t0283400-01
Chr03	irgsp1_rep	five_prime_UTR	9727459	9727472	.	-	.	Parent=Os03t0283400-01
Chr03	irgsp1_rep	CDS	9727304	9727458	.	-	0	Parent=Os03t0283400-01
Chr03	irgsp1_rep	CDS	9727025	9727154	.	-	1	Parent=Os03t0283400-01
Chr03	irgsp1_rep	CDS	9726540	9726919	.	-	0	Parent=Os03t0283400-01
Chr03	irgsp1_rep	CDS	9725510	9725936	.	-	1	Parent=Os03t0283400-01
Chr03	irgsp1_rep	three_prime_UTR	9725291	9725509	.	-	.	Parent=Os03t0283400-01
Chr03	irgsp1_rep	mRNA	9730441	9732958	.	-	.	ID=Os03t0283500-01;Name=Os03t0283500-01;Locus_id=Os03g0283500;Oryzabase Gene Symbol Synonym(s)=PPR;Oryzabase Gene Name Synonym(s)=Pentatricopeptide repeat (PPR) protein;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK103244 (DDBJ%2C Best hit);ORF_evidence=B8ALI6 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033123I23;Oryzabase=22518;Expression=AK103244;TENOR=Os03t0283500-01;KEGG=Os03t0283500-01
Chr03	irgsp1_rep	five_prime_UTR	9732923	9732958	.	-	.	Parent=Os03t0283500-01
Chr03	irgsp1_rep	CDS	9731126	9732922	.	-	0	Parent=Os03t0283500-01
Chr03	irgsp1_rep	three_prime_UTR	9730441	9731125	.	-	.	Parent=Os03t0283500-01
Chr03	irgsp1_rep	mRNA	9733147	9737559	.	-	.	ID=Os03t0283600-01;Name=Os03t0283600-01;Locus_id=Os03g0283600;Note=CDP-alcohol phosphatidyltransferase domain containing protein.;Transcript_evidence=AK070093 (DDBJ%2C Best hit);ORF_evidence=B6SU69 (UniProt);GO=Biological Process: phospholipid biosynthetic process (GO:0008654),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity (GO:0008444),Molecular Function: phosphotransferase activity%2C for other substituted phosphate groups (GO:0016780);InterPro=CDP-alcohol phosphatidyltransferase (IPR000462),CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (IPR004570);NIAS_FLcDNA=J023041M10;Expression=AK070093;TENOR=Os03t0283600-01;KEGG=Os03t0283600-01 (EC:2.7.8.5)
Chr03	irgsp1_rep	five_prime_UTR	9737441	9737559	.	-	.	Parent=Os03t0283600-01
Chr03	irgsp1_rep	CDS	9736978	9737440	.	-	0	Parent=Os03t0283600-01
Chr03	irgsp1_rep	CDS	9735155	9735252	.	-	2	Parent=Os03t0283600-01
Chr03	irgsp1_rep	CDS	9735007	9735057	.	-	0	Parent=Os03t0283600-01
Chr03	irgsp1_rep	CDS	9734749	9734862	.	-	0	Parent=Os03t0283600-01
Chr03	irgsp1_rep	CDS	9734031	9734087	.	-	0	Parent=Os03t0283600-01
Chr03	irgsp1_rep	CDS	9733866	9733951	.	-	0	Parent=Os03t0283600-01
Chr03	irgsp1_rep	CDS	9733644	9733764	.	-	1	Parent=Os03t0283600-01
Chr03	irgsp1_rep	three_prime_UTR	9733147	9733643	.	-	.	Parent=Os03t0283600-01
Chr03	irgsp1_rep	mRNA	9733200	9737043	.	-	.	ID=Os03t0283600-02;Name=Os03t0283600-02;Locus_id=Os03g0283600;Note=Similar to CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase.;Transcript_evidence=AK060009 (DDBJ%2C Best hit);ORF_evidence=NP_001151070.1 (RefSeq);GO=Biological Process: phospholipid biosynthetic process (GO:0008654),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity (GO:0008444),Molecular Function: phosphotransferase activity%2C for other substituted phosphate groups (GO:0016780);InterPro=CDP-alcohol phosphatidyltransferase (IPR000462),CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (IPR004570);NIAS_FLcDNA=006-302-D03;Expression=AK060009;TENOR=Os03t0283600-02;KEGG=Os03t0283600-02 (EC:2.7.8.5)
Chr03	irgsp1_rep	five_prime_UTR	9737042	9737043	.	-	.	Parent=Os03t0283600-02
Chr03	irgsp1_rep	CDS	9736978	9737041	.	-	0	Parent=Os03t0283600-02
Chr03	irgsp1_rep	CDS	9735155	9735252	.	-	2	Parent=Os03t0283600-02
Chr03	irgsp1_rep	CDS	9735007	9735057	.	-	0	Parent=Os03t0283600-02
Chr03	irgsp1_rep	CDS	9734749	9734862	.	-	0	Parent=Os03t0283600-02
Chr03	irgsp1_rep	CDS	9734031	9734087	.	-	0	Parent=Os03t0283600-02
Chr03	irgsp1_rep	CDS	9733866	9733951	.	-	0	Parent=Os03t0283600-02
Chr03	irgsp1_rep	CDS	9733644	9733764	.	-	1	Parent=Os03t0283600-02
Chr03	irgsp1_rep	three_prime_UTR	9733200	9733643	.	-	.	Parent=Os03t0283600-02
Chr03	irgsp1_rep	mRNA	9737013	9737291	.	+	.	ID=Os03t0283650-00;Name=Os03t0283650-00;Locus_id=Os03g0283650;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os03t0283650-00
Chr03	irgsp1_rep	CDS	9737013	9737291	.	+	0	Parent=Os03t0283650-00
Chr03	irgsp1_rep	mRNA	9743501	9744152	.	-	.	ID=Os03t0283750-01;Name=Os03t0283750-01;Locus_id=Os03g0283750;Note=Conserved hypothetical protein.;Transcript_evidence=AK241622 (DDBJ%2C Best hit);ORF_evidence=NP_001173371.1 (RefSeq);NIAS_FLcDNA=J065186L24;TENOR=Os03t0283750-01;KEGG=Os03t0283750-01
Chr03	irgsp1_rep	five_prime_UTR	9744066	9744152	.	-	.	Parent=Os03t0283750-01
Chr03	irgsp1_rep	CDS	9743751	9744065	.	-	0	Parent=Os03t0283750-01
Chr03	irgsp1_rep	three_prime_UTR	9743501	9743750	.	-	.	Parent=Os03t0283750-01
Chr03	irgsp1_rep	mRNA	9744220	9751248	.	+	.	ID=Os03t0283800-01;Name=Os03t0283800-01;Locus_id=Os03g0283800;Note=Similar to TBC domain containing protein%2C expressed.;Transcript_evidence=AK072879 (DDBJ%2C Best hit);ORF_evidence=Q10N37 (UniProt);NIAS_FLcDNA=J023146C19;TENOR=Os03t0283800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	9744220	9744487	.	+	.	Parent=Os03t0283800-01
Chr03	irgsp1_rep	CDS	9744488	9744504	.	+	0	Parent=Os03t0283800-01
Chr03	irgsp1_rep	CDS	9744693	9744762	.	+	1	Parent=Os03t0283800-01
Chr03	irgsp1_rep	CDS	9744872	9745777	.	+	0	Parent=Os03t0283800-01
Chr03	irgsp1_rep	CDS	9745867	9746052	.	+	0	Parent=Os03t0283800-01
Chr03	irgsp1_rep	three_prime_UTR	9746053	9746267	.	+	.	Parent=Os03t0283800-01
Chr03	irgsp1_rep	three_prime_UTR	9746869	9746927	.	+	.	Parent=Os03t0283800-01
Chr03	irgsp1_rep	three_prime_UTR	9747064	9747130	.	+	.	Parent=Os03t0283800-01
Chr03	irgsp1_rep	three_prime_UTR	9747199	9747250	.	+	.	Parent=Os03t0283800-01
Chr03	irgsp1_rep	three_prime_UTR	9747451	9747853	.	+	.	Parent=Os03t0283800-01
Chr03	irgsp1_rep	three_prime_UTR	9747964	9748382	.	+	.	Parent=Os03t0283800-01
Chr03	irgsp1_rep	three_prime_UTR	9748680	9748741	.	+	.	Parent=Os03t0283800-01
Chr03	irgsp1_rep	three_prime_UTR	9749199	9749268	.	+	.	Parent=Os03t0283800-01
Chr03	irgsp1_rep	three_prime_UTR	9749462	9749542	.	+	.	Parent=Os03t0283800-01
Chr03	irgsp1_rep	three_prime_UTR	9749624	9749725	.	+	.	Parent=Os03t0283800-01
Chr03	irgsp1_rep	three_prime_UTR	9749827	9749957	.	+	.	Parent=Os03t0283800-01
Chr03	irgsp1_rep	three_prime_UTR	9750386	9750500	.	+	.	Parent=Os03t0283800-01
Chr03	irgsp1_rep	three_prime_UTR	9750686	9751248	.	+	.	Parent=Os03t0283800-01
Chr03	irgsp1_rep	mRNA	9746152	9749918	.	-	.	ID=Os03t0283850-00;Name=Os03t0283850-00;Locus_id=Os03g0283850;Note=Hypothetical protein.;Transcript_evidence=tplb0061a18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0283850-00
Chr03	irgsp1_rep	five_prime_UTR	9749917	9749918	.	-	.	Parent=Os03t0283850-00
Chr03	irgsp1_rep	CDS	9749804	9749916	.	-	0	Parent=Os03t0283850-00
Chr03	irgsp1_rep	CDS	9749612	9749708	.	-	1	Parent=Os03t0283850-00
Chr03	irgsp1_rep	CDS	9748766	9748876	.	-	0	Parent=Os03t0283850-00
Chr03	irgsp1_rep	three_prime_UTR	9748621	9748765	.	-	.	Parent=Os03t0283850-00
Chr03	irgsp1_rep	three_prime_UTR	9747936	9748325	.	-	.	Parent=Os03t0283850-00
Chr03	irgsp1_rep	three_prime_UTR	9747441	9747587	.	-	.	Parent=Os03t0283850-00
Chr03	irgsp1_rep	three_prime_UTR	9747205	9747246	.	-	.	Parent=Os03t0283850-00
Chr03	irgsp1_rep	three_prime_UTR	9747013	9747136	.	-	.	Parent=Os03t0283850-00
Chr03	irgsp1_rep	three_prime_UTR	9746152	9746278	.	-	.	Parent=Os03t0283850-00
Chr03	irgsp1_rep	mRNA	9751802	9755757	.	-	.	ID=Os03t0283900-01;Name=Os03t0283900-01;Locus_id=Os03g0283900;CGSNL Gene Symbol=RLCK108;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 108;Oryzabase Gene Symbol Synonym(s)=OsRLCK108;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 108;Note=Similar to Serine/threonine-protein kinase PBS1 (EC 2.7.1.37) (AvrPphB susceptible protein 1).;Transcript_evidence=AK105569 (DDBJ%2C Best hit);ORF_evidence=Q32SF8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-128-C11;Oryzabase=18816;Expression=AK105569;TENOR=Os03t0283900-01;KEGG=Os03t0283900-01 (EC:2.7.1.37)
Chr03	irgsp1_rep	five_prime_UTR	9755614	9755757	.	-	.	Parent=Os03t0283900-01
Chr03	irgsp1_rep	CDS	9755520	9755613	.	-	0	Parent=Os03t0283900-01
Chr03	irgsp1_rep	CDS	9754310	9754497	.	-	2	Parent=Os03t0283900-01
Chr03	irgsp1_rep	CDS	9753490	9753679	.	-	0	Parent=Os03t0283900-01
Chr03	irgsp1_rep	CDS	9752989	9753380	.	-	2	Parent=Os03t0283900-01
Chr03	irgsp1_rep	CDS	9752234	9752533	.	-	0	Parent=Os03t0283900-01
Chr03	irgsp1_rep	three_prime_UTR	9751802	9752233	.	-	.	Parent=Os03t0283900-01
Chr03	irgsp1_rep	mRNA	9756908	9759147	.	+	.	ID=Os03t0284000-00;Name=Os03t0284000-00;Locus_id=Os03g0284000;Note=Hypothetical conserved gene.;Transcript_evidence=EU970944 (DDBJ);ORF_evidence=B8ALI9 (UniProt);InterPro=Uncharacterised protein family UPF0405 (IPR018627);TENOR=Os03t0284000-00;KEGG=Os03t0284000-00
Chr03	irgsp1_rep	five_prime_UTR	9756908	9757005	.	+	.	Parent=Os03t0284000-00
Chr03	irgsp1_rep	CDS	9757006	9757209	.	+	0	Parent=Os03t0284000-00
Chr03	irgsp1_rep	CDS	9758282	9758345	.	+	0	Parent=Os03t0284000-00
Chr03	irgsp1_rep	CDS	9758441	9758652	.	+	2	Parent=Os03t0284000-00
Chr03	irgsp1_rep	CDS	9758744	9758890	.	+	0	Parent=Os03t0284000-00
Chr03	irgsp1_rep	CDS	9759025	9759147	.	+	0	Parent=Os03t0284000-00
Chr03	irgsp1_rep	mRNA	9759666	9768689	.	-	.	ID=Os03t0284100-01;Name=Os03t0284100-01;Locus_id=Os03g0284100;CGSNL Gene Symbol=PRR73;CGSNL Gene Name=PSEUDO-RESPONSE REGULATOR 73;Oryzabase Gene Symbol Synonym(s)=OsPRR73%2C Os-PRR73%2C Prr3%2C OsPRR3%2C OsRRA20%2C OsCCT11;Oryzabase Gene Name Synonym(s)=A-type RR 20%2C pseudo-response regulator 3%2C CCT domain-containing gene 11%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 11%2C CCT domain protein 11;Note=Similar to Two-component response regulator-like PRR73.;Transcript_evidence=AK121136 (DDBJ%2C Best hit);ORF_evidence=Q10N34 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: two-component response regulator activity (GO:0000156);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),CheY-like superfamily (IPR011006);NIAS_FLcDNA=J023077E22;Oryzabase=8820;Expression=AK121136;TENOR=Os03t0284100-01;KEGG=Os03t0284100-01
Chr03	irgsp1_rep	five_prime_UTR	9768511	9768689	.	-	.	Parent=Os03t0284100-01
Chr03	irgsp1_rep	five_prime_UTR	9768283	9768407	.	-	.	Parent=Os03t0284100-01
Chr03	irgsp1_rep	five_prime_UTR	9768106	9768181	.	-	.	Parent=Os03t0284100-01
Chr03	irgsp1_rep	five_prime_UTR	9767720	9768025	.	-	.	Parent=Os03t0284100-01
Chr03	irgsp1_rep	CDS	9767401	9767719	.	-	0	Parent=Os03t0284100-01
Chr03	irgsp1_rep	CDS	9764210	9764371	.	-	2	Parent=Os03t0284100-01
Chr03	irgsp1_rep	CDS	9763965	9764098	.	-	2	Parent=Os03t0284100-01
Chr03	irgsp1_rep	CDS	9763624	9763815	.	-	0	Parent=Os03t0284100-01
Chr03	irgsp1_rep	CDS	9762033	9762213	.	-	0	Parent=Os03t0284100-01
Chr03	irgsp1_rep	CDS	9761525	9761945	.	-	2	Parent=Os03t0284100-01
Chr03	irgsp1_rep	CDS	9760615	9761443	.	-	1	Parent=Os03t0284100-01
Chr03	irgsp1_rep	three_prime_UTR	9759666	9760614	.	-	.	Parent=Os03t0284100-01
Chr03	irgsp1_rep	mRNA	9761284	9764048	.	-	.	ID=Os03t0284100-02;Name=Os03t0284100-02;Locus_id=Os03g0284100;CGSNL Gene Symbol=PRR73;CGSNL Gene Name=PSEUDO-RESPONSE REGULATOR 73;Oryzabase Gene Symbol Synonym(s)=OsPRR73%2C Os-PRR73%2C Prr3%2C OsPRR3%2C OsRRA20%2C OsCCT11;Oryzabase Gene Name Synonym(s)=A-type RR 20%2C pseudo-response regulator 3%2C CCT domain-containing gene 11%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 11%2C CCT domain protein 11;Note=Similar to Two-component response regulator-like PRR73.;Transcript_evidence=AK099526 (DDBJ%2C Best hit);ORF_evidence=Q10N34 (UniProt);NIAS_FLcDNA=J013030P09;Oryzabase=8820;Expression=AK099526;TENOR=Os03t0284100-02;KEGG=Os03t0284100-02
Chr03	irgsp1_rep	CDS	9763965	9764048	.	-	0	Parent=Os03t0284100-02
Chr03	irgsp1_rep	CDS	9763624	9763815	.	-	0	Parent=Os03t0284100-02
Chr03	irgsp1_rep	CDS	9762033	9762213	.	-	0	Parent=Os03t0284100-02
Chr03	irgsp1_rep	CDS	9761512	9761945	.	-	2	Parent=Os03t0284100-02
Chr03	irgsp1_rep	three_prime_UTR	9761284	9761511	.	-	.	Parent=Os03t0284100-02
Chr03	irgsp1_rep	mRNA	9759666	9761524	.	-	.	ID=Os03t0284100-03;Name=Os03t0284100-03;Locus_id=Os03g0284100;CGSNL Gene Symbol=PRR73;CGSNL Gene Name=PSEUDO-RESPONSE REGULATOR 73;Oryzabase Gene Symbol Synonym(s)=OsPRR73%2C Os-PRR73%2C Prr3%2C OsPRR3%2C OsRRA20%2C OsCCT11;Oryzabase Gene Name Synonym(s)=A-type RR 20%2C pseudo-response regulator 3%2C CCT domain-containing gene 11%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 11%2C CCT domain protein 11;Note=Similar to Two-component response regulator-like PRR73.;Transcript_evidence=AK068603 (DDBJ%2C Best hit);ORF_evidence=Q10N34 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=CCT domain (IPR010402);NIAS_FLcDNA=J013157G11;Oryzabase=8820;Expression=AK068603;TENOR=Os03t0284100-03;KEGG=Os03t0284100-03
Chr03	irgsp1_rep	five_prime_UTR	9761491	9761524	.	-	.	Parent=Os03t0284100-03
Chr03	irgsp1_rep	CDS	9760660	9761490	.	-	0	Parent=Os03t0284100-03
Chr03	irgsp1_rep	CDS	9760098	9760208	.	-	0	Parent=Os03t0284100-03
Chr03	irgsp1_rep	three_prime_UTR	9759666	9760097	.	-	.	Parent=Os03t0284100-03
Chr03	irgsp1_rep	mRNA	9760098	9767719	.	-	.	ID=Os03t0284100-04;Name=Os03t0284100-04;Locus_id=Os03g0284100;RAP-DB Gene Symbol Synonym(s)=OsPRR73;RAP-DB Gene Name Synonym(s)=Pseudo-Response Regulator 73;CGSNL Gene Symbol=PRR73;CGSNL Gene Name=PSEUDO-RESPONSE REGULATOR 73;Oryzabase Gene Symbol Synonym(s)=OsPRR73%2C Os-PRR73%2C Prr3%2C OsPRR3%2C OsRRA20%2C OsCCT11;Oryzabase Gene Name Synonym(s)=A-type RR 20%2C pseudo-response regulator 3%2C CCT domain-containing gene 11%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 11%2C CCT domain protein 11;Note=Circadian-associated rice pseudo response regulator%2C Control of flowering time;Transcript_evidence=AB189040;ORF_evidence=Q10N34;GO=Biological Process: phosphorelay signal transduction system (GO:0000160),Molecular Function: protein binding (GO:0005515);InterPro=CheY-like superfamily (IPR011006),Signal transduction response regulator%2C receiver domain (IPR001789),CCT domain (IPR010402);Manual Curation=September 7%2C 2017;Literature_PMID=17132630,15725670,14634161;Oryzabase=8820;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	9767401	9767719	.	-	0	Parent=Os03t0284100-04
Chr03	irgsp1_rep	CDS	9764210	9764371	.	-	2	Parent=Os03t0284100-04
Chr03	irgsp1_rep	CDS	9763965	9764098	.	-	2	Parent=Os03t0284100-04
Chr03	irgsp1_rep	CDS	9763624	9763815	.	-	0	Parent=Os03t0284100-04
Chr03	irgsp1_rep	CDS	9762033	9762213	.	-	0	Parent=Os03t0284100-04
Chr03	irgsp1_rep	CDS	9761525	9761945	.	-	2	Parent=Os03t0284100-04
Chr03	irgsp1_rep	CDS	9760660	9761443	.	-	1	Parent=Os03t0284100-04
Chr03	irgsp1_rep	CDS	9760098	9760208	.	-	0	Parent=Os03t0284100-04
Chr03	irgsp1_rep	mRNA	9759931	9767728	.	+	.	ID=Os03t0284150-00;Name=Os03t0284150-00;Locus_id=Os03g0284150;Note=Hypothetical protein.;Transcript_evidence=tplb0030a07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0284150-00
Chr03	irgsp1_rep	five_prime_UTR	9759931	9760206	.	+	.	Parent=Os03t0284150-00
Chr03	irgsp1_rep	five_prime_UTR	9760658	9761441	.	+	.	Parent=Os03t0284150-00
Chr03	irgsp1_rep	five_prime_UTR	9761523	9761940	.	+	.	Parent=Os03t0284150-00
Chr03	irgsp1_rep	five_prime_UTR	9762030	9762217	.	+	.	Parent=Os03t0284150-00
Chr03	irgsp1_rep	five_prime_UTR	9763629	9763786	.	+	.	Parent=Os03t0284150-00
Chr03	irgsp1_rep	CDS	9763787	9763807	.	+	0	Parent=Os03t0284150-00
Chr03	irgsp1_rep	CDS	9763963	9764098	.	+	0	Parent=Os03t0284150-00
Chr03	irgsp1_rep	CDS	9764210	9764371	.	+	2	Parent=Os03t0284150-00
Chr03	irgsp1_rep	CDS	9767401	9767408	.	+	2	Parent=Os03t0284150-00
Chr03	irgsp1_rep	three_prime_UTR	9767409	9767728	.	+	.	Parent=Os03t0284150-00
Chr03	irgsp1_rep	mRNA	9764932	9765922	.	-	.	ID=Os03t0284200-01;Name=Os03t0284200-01;Locus_id=Os03g0284200;Note=Non-protein coding transcript.;Transcript_evidence=AK062789 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-107-B12;TENOR=Os03t0284200-01
Chr03	irgsp1_rep	exon	9764932	9765922	.	-	.	Parent=Os03t0284200-01
Chr03	irgsp1_rep	mRNA	9781436	9782524	.	-	.	ID=Os03t0284400-01;Name=Os03t0284400-01;Locus_id=Os03g0284400;Note=Similar to Ribosomal protein L10-like.;Transcript_evidence=AK069064 (DDBJ%2C Best hit),AK061592 (DDBJ%2C Best hit);ORF_evidence=Q9ZSS9 (UniProt);GO=Biological Process: ribosome biogenesis (GO:0042254),Cellular Component: intracellular (GO:0005622);InterPro=Ribosomal protein L10/acidic P0 (IPR001790),Ribosomal protein L10 (IPR022973);NIAS_FLcDNA=J023009H08,001-022-H11;Expression=AK069064;TENOR=Os03t0284400-01;KEGG=Os03t0284400-01
Chr03	irgsp1_rep	five_prime_UTR	9782497	9782524	.	-	.	Parent=Os03t0284400-01
Chr03	irgsp1_rep	CDS	9781834	9782496	.	-	0	Parent=Os03t0284400-01
Chr03	irgsp1_rep	three_prime_UTR	9781436	9781833	.	-	.	Parent=Os03t0284400-01
Chr03	irgsp1_rep	mRNA	9783786	9788821	.	-	.	ID=Os03t0284500-01;Name=Os03t0284500-01;Locus_id=Os03g0284500;Note=HAD-superfamily subfamily IIA hydrolase%2C CECR5 protein.;Transcript_evidence=AK121300 (DDBJ%2C Best hit);ORF_evidence=NP_001152161.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=HAD-superfamily hydrolase%2C subfamily IIA%2C CECR5 (IPR006353),HAD-superfamily hydrolase%2C subfamily IIA (IPR006357),HAD-like domain (IPR023214);NIAS_FLcDNA=J023110L17;Expression=AK121300;TENOR=Os03t0284500-01;KEGG=Os03t0284500-01
Chr03	irgsp1_rep	five_prime_UTR	9788615	9788821	.	-	.	Parent=Os03t0284500-01
Chr03	irgsp1_rep	CDS	9788380	9788614	.	-	0	Parent=Os03t0284500-01
Chr03	irgsp1_rep	CDS	9787885	9787920	.	-	2	Parent=Os03t0284500-01
Chr03	irgsp1_rep	CDS	9786910	9786983	.	-	2	Parent=Os03t0284500-01
Chr03	irgsp1_rep	CDS	9786680	9786720	.	-	0	Parent=Os03t0284500-01
Chr03	irgsp1_rep	CDS	9786484	9786555	.	-	1	Parent=Os03t0284500-01
Chr03	irgsp1_rep	CDS	9786201	9786402	.	-	1	Parent=Os03t0284500-01
Chr03	irgsp1_rep	CDS	9785893	9785988	.	-	0	Parent=Os03t0284500-01
Chr03	irgsp1_rep	CDS	9785557	9785624	.	-	0	Parent=Os03t0284500-01
Chr03	irgsp1_rep	CDS	9785278	9785479	.	-	1	Parent=Os03t0284500-01
Chr03	irgsp1_rep	CDS	9784872	9784955	.	-	0	Parent=Os03t0284500-01
Chr03	irgsp1_rep	CDS	9784175	9784234	.	-	0	Parent=Os03t0284500-01
Chr03	irgsp1_rep	three_prime_UTR	9783786	9784174	.	-	.	Parent=Os03t0284500-01
Chr03	irgsp1_rep	mRNA	9783827	9788736	.	-	.	ID=Os03t0284500-02;Name=Os03t0284500-02;Locus_id=Os03g0284500;Note=Similar to cat eye syndrome critical region protein 5.;Transcript_evidence=AK105295 (DDBJ%2C Best hit);ORF_evidence=NP_001152161.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=HAD-superfamily hydrolase%2C subfamily IIA%2C CECR5 (IPR006353),HAD-superfamily hydrolase%2C subfamily IIA (IPR006357),HAD-like domain (IPR023214);NIAS_FLcDNA=001-116-G11;Expression=AK105295;TENOR=Os03t0284500-02;KEGG=Os03t0284500-02
Chr03	irgsp1_rep	five_prime_UTR	9788615	9788736	.	-	.	Parent=Os03t0284500-02
Chr03	irgsp1_rep	CDS	9788380	9788614	.	-	0	Parent=Os03t0284500-02
Chr03	irgsp1_rep	CDS	9787885	9787920	.	-	2	Parent=Os03t0284500-02
Chr03	irgsp1_rep	CDS	9786910	9786983	.	-	2	Parent=Os03t0284500-02
Chr03	irgsp1_rep	CDS	9786680	9786720	.	-	0	Parent=Os03t0284500-02
Chr03	irgsp1_rep	CDS	9786484	9786555	.	-	1	Parent=Os03t0284500-02
Chr03	irgsp1_rep	CDS	9786117	9786402	.	-	1	Parent=Os03t0284500-02
Chr03	irgsp1_rep	three_prime_UTR	9785893	9786116	.	-	.	Parent=Os03t0284500-02
Chr03	irgsp1_rep	three_prime_UTR	9785557	9785624	.	-	.	Parent=Os03t0284500-02
Chr03	irgsp1_rep	three_prime_UTR	9784872	9784955	.	-	.	Parent=Os03t0284500-02
Chr03	irgsp1_rep	three_prime_UTR	9783827	9784234	.	-	.	Parent=Os03t0284500-02
Chr03	irgsp1_rep	mRNA	9788873	9791847	.	+	.	ID=Os03t0284600-01;Name=Os03t0284600-01;Locus_id=Os03g0284600;Note=Thioredoxin-like fold domain containing protein.;Transcript_evidence=AK110712 (DDBJ%2C Best hit);ORF_evidence=B8ALJ3 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: antioxidant activity (GO:0016209),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant (IPR000866),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=002-170-D02;Expression=AK110712;TENOR=Os03t0284600-01;KEGG=Os03t0284600-01
Chr03	irgsp1_rep	five_prime_UTR	9788873	9788948	.	+	.	Parent=Os03t0284600-01
Chr03	irgsp1_rep	CDS	9788949	9789117	.	+	0	Parent=Os03t0284600-01
Chr03	irgsp1_rep	CDS	9789199	9789349	.	+	2	Parent=Os03t0284600-01
Chr03	irgsp1_rep	CDS	9789442	9789487	.	+	1	Parent=Os03t0284600-01
Chr03	irgsp1_rep	CDS	9789868	9789927	.	+	0	Parent=Os03t0284600-01
Chr03	irgsp1_rep	CDS	9790413	9790449	.	+	0	Parent=Os03t0284600-01
Chr03	irgsp1_rep	CDS	9791162	9791241	.	+	2	Parent=Os03t0284600-01
Chr03	irgsp1_rep	CDS	9791319	9791410	.	+	0	Parent=Os03t0284600-01
Chr03	irgsp1_rep	CDS	9791507	9791567	.	+	1	Parent=Os03t0284600-01
Chr03	irgsp1_rep	CDS	9791703	9791762	.	+	0	Parent=Os03t0284600-01
Chr03	irgsp1_rep	three_prime_UTR	9791763	9791847	.	+	.	Parent=Os03t0284600-01
Chr03	irgsp1_rep	mRNA	9794230	9795285	.	+	.	ID=Os03t0284650-00;Name=Os03t0284650-00;Locus_id=Os03g0284650;Note=Gnk2-homologous domain domain containing protein.;Transcript_evidence=tplb0041l12 (Wheat FLcDNA);ORF_evidence=Q8GZY4 (UniProt);InterPro=Gnk2-homologous domain (IPR002902);TENOR=Os03t0284650-00
Chr03	irgsp1_rep	CDS	9794230	9795285	.	+	0	Parent=Os03t0284650-00
Chr03	irgsp1_rep	mRNA	9795501	9796381	.	+	.	ID=Os03t0284700-01;Name=Os03t0284700-01;Locus_id=Os03g0284700;Note=Conserved hypothetical protein.;Transcript_evidence=AK069841 (DDBJ%2C Best hit);ORF_evidence=B9F7P5 (UniProt);NIAS_FLcDNA=J023031G23;Expression=AK069841;TENOR=Os03t0284700-01;KEGG=Os03t0284700-01
Chr03	irgsp1_rep	five_prime_UTR	9795501	9795750	.	+	.	Parent=Os03t0284700-01
Chr03	irgsp1_rep	CDS	9795751	9795909	.	+	0	Parent=Os03t0284700-01
Chr03	irgsp1_rep	CDS	9796024	9796107	.	+	0	Parent=Os03t0284700-01
Chr03	irgsp1_rep	three_prime_UTR	9796108	9796381	.	+	.	Parent=Os03t0284700-01
Chr03	irgsp1_rep	mRNA	9797238	9799120	.	+	.	ID=Os03t0284800-01;Name=Os03t0284800-01;Locus_id=Os03g0284800;CGSNL Gene Symbol=TOP6A3;CGSNL Gene Name=TOPOISOMERASE 6 SUBUNIT A3;Oryzabase Gene Symbol Synonym(s)=OsTOP6A3%2C OsSPO11-3%2C OsSPO11C;Oryzabase Gene Name Synonym(s)=topoisomerase 6 subunit A3;Note=Spo11/DNA topoisomerase VI%2C subunit A family protein.;Transcript_evidence=AK073184 (DDBJ%2C Best hit);ORF_evidence=Q5ZPV7 (UniProt);GO=Biological Process: DNA metabolic process (GO:0006259),Biological Process: DNA topological change (GO:0006265),Cellular Component: Chromosome (GO:0005694),Molecular Function: DNA binding (GO:0003677),Molecular Function: catalytic activity (GO:0003824),Molecular Function: DNA topoisomerase (ATP-hydrolyzing) activity (GO:0003918),Molecular Function: ATP binding (GO:0005524);InterPro=Spo11/DNA topoisomerase VI%2C subunit A (IPR002815),DNA topoisomerase VI%2C subunit A (IPR004085),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Spo11/DNA topoisomerase VI%2C subunit A%2C N-terminal (IPR013049);NIAS_FLcDNA=J033010B03;Oryzabase=8390;Expression=AK073184;TENOR=Os03t0284800-01;KEGG=Os03t0284800-01
Chr03	irgsp1_rep	five_prime_UTR	9797238	9797351	.	+	.	Parent=Os03t0284800-01
Chr03	irgsp1_rep	CDS	9797352	9798680	.	+	0	Parent=Os03t0284800-01
Chr03	irgsp1_rep	three_prime_UTR	9798681	9799120	.	+	.	Parent=Os03t0284800-01
Chr03	irgsp1_rep	mRNA	9799120	9822067	.	-	.	ID=Os03t0284900-01;Name=Os03t0284900-01;Locus_id=Os03g0284900;Note=Annexin repeat%2C conserved site domain containing protein.;Transcript_evidence=AK068146 (DDBJ%2C Best hit);ORF_evidence=XP_002465430.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013135M09;Expression=AK068146;TENOR=Os03t0284900-01;KEGG=Os03t0284900-01
Chr03	irgsp1_rep	five_prime_UTR	9822004	9822067	.	-	.	Parent=Os03t0284900-01
Chr03	irgsp1_rep	CDS	9821484	9822003	.	-	0	Parent=Os03t0284900-01
Chr03	irgsp1_rep	CDS	9820241	9820328	.	-	2	Parent=Os03t0284900-01
Chr03	irgsp1_rep	CDS	9819799	9820003	.	-	1	Parent=Os03t0284900-01
Chr03	irgsp1_rep	CDS	9819004	9819111	.	-	0	Parent=Os03t0284900-01
Chr03	irgsp1_rep	CDS	9818587	9818751	.	-	0	Parent=Os03t0284900-01
Chr03	irgsp1_rep	CDS	9817950	9818504	.	-	0	Parent=Os03t0284900-01
Chr03	irgsp1_rep	CDS	9817260	9817325	.	-	0	Parent=Os03t0284900-01
Chr03	irgsp1_rep	CDS	9817083	9817163	.	-	0	Parent=Os03t0284900-01
Chr03	irgsp1_rep	CDS	9800889	9800986	.	-	0	Parent=Os03t0284900-01
Chr03	irgsp1_rep	CDS	9800340	9800541	.	-	1	Parent=Os03t0284900-01
Chr03	irgsp1_rep	CDS	9800011	9800071	.	-	0	Parent=Os03t0284900-01
Chr03	irgsp1_rep	CDS	9799618	9799928	.	-	2	Parent=Os03t0284900-01
Chr03	irgsp1_rep	three_prime_UTR	9799120	9799617	.	-	.	Parent=Os03t0284900-01
Chr03	irgsp1_rep	mRNA	9799297	9822037	.	-	.	ID=Os03t0284900-02;Name=Os03t0284900-02;Locus_id=Os03g0284900;Note=Annexin repeat%2C conserved site domain containing protein.;Transcript_evidence=AK099067 (DDBJ%2C Best hit);ORF_evidence=XP_002465430.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013159K04;Expression=AK099067;TENOR=Os03t0284900-02;KEGG=Os03t0284900-02
Chr03	irgsp1_rep	five_prime_UTR	9822004	9822037	.	-	.	Parent=Os03t0284900-02
Chr03	irgsp1_rep	CDS	9821484	9822003	.	-	0	Parent=Os03t0284900-02
Chr03	irgsp1_rep	CDS	9820241	9820328	.	-	2	Parent=Os03t0284900-02
Chr03	irgsp1_rep	CDS	9819799	9820003	.	-	1	Parent=Os03t0284900-02
Chr03	irgsp1_rep	CDS	9819004	9819111	.	-	0	Parent=Os03t0284900-02
Chr03	irgsp1_rep	CDS	9818587	9818751	.	-	0	Parent=Os03t0284900-02
Chr03	irgsp1_rep	CDS	9817950	9818504	.	-	0	Parent=Os03t0284900-02
Chr03	irgsp1_rep	CDS	9817260	9817325	.	-	0	Parent=Os03t0284900-02
Chr03	irgsp1_rep	CDS	9817083	9817163	.	-	0	Parent=Os03t0284900-02
Chr03	irgsp1_rep	CDS	9800889	9800986	.	-	0	Parent=Os03t0284900-02
Chr03	irgsp1_rep	CDS	9800340	9800541	.	-	1	Parent=Os03t0284900-02
Chr03	irgsp1_rep	CDS	9800011	9800071	.	-	0	Parent=Os03t0284900-02
Chr03	irgsp1_rep	CDS	9799618	9799928	.	-	2	Parent=Os03t0284900-02
Chr03	irgsp1_rep	three_prime_UTR	9799297	9799617	.	-	.	Parent=Os03t0284900-02
Chr03	irgsp1_rep	mRNA	9799317	9819822	.	-	.	ID=Os03t0284900-03;Name=Os03t0284900-03;Locus_id=Os03g0284900;Note=Hypothetical conserved gene.;Transcript_evidence=AK060735 (DDBJ%2C Best hit);ORF_evidence=XP_002465430.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-032-C02;Expression=AK060735;TENOR=Os03t0284900-03;KEGG=Os03t0284900-03
Chr03	irgsp1_rep	CDS	9819799	9819822	.	-	0	Parent=Os03t0284900-03
Chr03	irgsp1_rep	CDS	9819004	9819111	.	-	0	Parent=Os03t0284900-03
Chr03	irgsp1_rep	CDS	9818587	9818751	.	-	0	Parent=Os03t0284900-03
Chr03	irgsp1_rep	CDS	9817950	9818504	.	-	0	Parent=Os03t0284900-03
Chr03	irgsp1_rep	CDS	9817260	9817325	.	-	0	Parent=Os03t0284900-03
Chr03	irgsp1_rep	CDS	9817083	9817163	.	-	0	Parent=Os03t0284900-03
Chr03	irgsp1_rep	CDS	9800889	9800986	.	-	0	Parent=Os03t0284900-03
Chr03	irgsp1_rep	CDS	9800340	9800541	.	-	1	Parent=Os03t0284900-03
Chr03	irgsp1_rep	CDS	9800011	9800071	.	-	0	Parent=Os03t0284900-03
Chr03	irgsp1_rep	CDS	9799618	9799928	.	-	2	Parent=Os03t0284900-03
Chr03	irgsp1_rep	three_prime_UTR	9799317	9799617	.	-	.	Parent=Os03t0284900-03
Chr03	irgsp1_rep	mRNA	9799309	9818361	.	-	.	ID=Os03t0284900-04;Name=Os03t0284900-04;Locus_id=Os03g0284900;Note=Similar to cDNA clone:001-032-C02%2C full insert sequence.;Transcript_evidence=AK065726 (DDBJ%2C Best hit);ORF_evidence=Q10N25 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J013036N08;Expression=AK065726;TENOR=Os03t0284900-04;KEGG=Os03t0284900-04
Chr03	irgsp1_rep	five_prime_UTR	9818361	9818361	.	-	.	Parent=Os03t0284900-04
Chr03	irgsp1_rep	CDS	9817950	9818360	.	-	0	Parent=Os03t0284900-04
Chr03	irgsp1_rep	CDS	9817260	9817325	.	-	0	Parent=Os03t0284900-04
Chr03	irgsp1_rep	CDS	9817083	9817163	.	-	0	Parent=Os03t0284900-04
Chr03	irgsp1_rep	CDS	9800889	9800986	.	-	0	Parent=Os03t0284900-04
Chr03	irgsp1_rep	CDS	9800340	9800541	.	-	1	Parent=Os03t0284900-04
Chr03	irgsp1_rep	CDS	9800011	9800071	.	-	0	Parent=Os03t0284900-04
Chr03	irgsp1_rep	CDS	9799618	9799928	.	-	2	Parent=Os03t0284900-04
Chr03	irgsp1_rep	three_prime_UTR	9799309	9799617	.	-	.	Parent=Os03t0284900-04
Chr03	irgsp1_rep	mRNA	9822842	9826639	.	+	.	ID=Os03t0285100-01;Name=Os03t0285100-01;Locus_id=Os03g0285100;Note=Conserved hypothetical protein.;Transcript_evidence=AK071764 (DDBJ%2C Best hit);ORF_evidence=B8ALJ5 (UniProt);NIAS_FLcDNA=J023110L01;Expression=AK071764;TENOR=Os03t0285100-01;KEGG=Os03t0285100-01
Chr03	irgsp1_rep	five_prime_UTR	9822842	9822950	.	+	.	Parent=Os03t0285100-01
Chr03	irgsp1_rep	CDS	9822951	9823059	.	+	0	Parent=Os03t0285100-01
Chr03	irgsp1_rep	CDS	9825361	9825629	.	+	2	Parent=Os03t0285100-01
Chr03	irgsp1_rep	three_prime_UTR	9825630	9826639	.	+	.	Parent=Os03t0285100-01
Chr03	irgsp1_rep	mRNA	9825338	9825583	.	-	.	ID=Os03t0285133-00;Name=Os03t0285133-00;Locus_id=Os03g0285133;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=C4J6P4 (UniProt);TENOR=Os03t0285133-00;KEGG=Os03t0285133-00
Chr03	irgsp1_rep	CDS	9825338	9825583	.	-	0	Parent=Os03t0285133-00
Chr03	irgsp1_rep	mRNA	9826797	9826974	.	+	.	ID=Os03t0285166-00;Name=Os03t0285166-00;Locus_id=Os03g0285166;Note=Non-protein coding transcript.;Transcript_evidence=CT835216 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os03t0285166-00
Chr03	irgsp1_rep	exon	9826797	9826974	.	+	.	Parent=Os03t0285166-00
Chr03	irgsp1_rep	mRNA	9827520	9828763	.	+	.	ID=Os03t0285200-01;Name=Os03t0285200-01;Locus_id=Os03g0285200;Note=Conserved hypothetical protein.;Transcript_evidence=AK241197 (DDBJ%2C Best hit);ORF_evidence=NP_001173373.1 (RefSeq);NIAS_FLcDNA=J065121H18;TENOR=Os03t0285200-01;KEGG=Os03t0285200-01
Chr03	irgsp1_rep	five_prime_UTR	9827520	9828147	.	+	.	Parent=Os03t0285200-01
Chr03	irgsp1_rep	CDS	9828148	9828327	.	+	0	Parent=Os03t0285200-01
Chr03	irgsp1_rep	three_prime_UTR	9828328	9828763	.	+	.	Parent=Os03t0285200-01
Chr03	irgsp1_rep	mRNA	9832684	9833183	.	+	.	ID=Os03t0285300-01;Name=Os03t0285300-01;Locus_id=Os03g0285300;Note=Conserved hypothetical protein.;Transcript_evidence=AK242231 (DDBJ%2C Best hit);ORF_evidence=NP_001173374.1 (RefSeq);NIAS_FLcDNA=J075176F18;TENOR=Os03t0285300-01;KEGG=Os03t0285300-01
Chr03	irgsp1_rep	five_prime_UTR	9832684	9832773	.	+	.	Parent=Os03t0285300-01
Chr03	irgsp1_rep	CDS	9832774	9832977	.	+	0	Parent=Os03t0285300-01
Chr03	irgsp1_rep	three_prime_UTR	9832978	9833183	.	+	.	Parent=Os03t0285300-01
Chr03	irgsp1_rep	mRNA	9843336	9846670	.	+	.	ID=Os03t0285700-01;Name=Os03t0285700-01;Locus_id=Os03g0285700;CGSNL Gene Symbol=APX1;CGSNL Gene Name=ASCORBATE PEROXIDASE 1;Oryzabase Gene Symbol Synonym(s)=OsAPX1%2C APXa%2C OsAPx01%2C OsAPx1%2C OSAPX1%2C APx1%2C cAPX;Oryzabase Gene Name Synonym(s)="L-ascorbate peroxidase 1%2C cytosolic"%2C Ascorbate peroxidase%2C cytosolic Ascorbate Peroxidase%2C ascorbate peroxidase 1%2C ascorbate peroxidase a;Note=Similar to L-ascorbate peroxidase.;Transcript_evidence=AK061841 (DDBJ%2C Best hit);ORF_evidence=Q10N21 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Plant ascorbate peroxidase (IPR002207),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=001-040-E04;Oryzabase=7166;Expression=AK061841;TENOR=Os03t0285700-01;KEGG=Os03t0285700-01 (EC:1.11.1.11)
Chr03	irgsp1_rep	five_prime_UTR	9843336	9843403	.	+	.	Parent=Os03t0285700-01
Chr03	irgsp1_rep	CDS	9843404	9843522	.	+	0	Parent=Os03t0285700-01
Chr03	irgsp1_rep	CDS	9843618	9843792	.	+	1	Parent=Os03t0285700-01
Chr03	irgsp1_rep	CDS	9843887	9843952	.	+	0	Parent=Os03t0285700-01
Chr03	irgsp1_rep	CDS	9845309	9845357	.	+	0	Parent=Os03t0285700-01
Chr03	irgsp1_rep	CDS	9845691	9845776	.	+	2	Parent=Os03t0285700-01
Chr03	irgsp1_rep	CDS	9845863	9845942	.	+	0	Parent=Os03t0285700-01
Chr03	irgsp1_rep	CDS	9846038	9846140	.	+	1	Parent=Os03t0285700-01
Chr03	irgsp1_rep	CDS	9846258	9846316	.	+	0	Parent=Os03t0285700-01
Chr03	irgsp1_rep	CDS	9846403	9846418	.	+	1	Parent=Os03t0285700-01
Chr03	irgsp1_rep	three_prime_UTR	9846419	9846670	.	+	.	Parent=Os03t0285700-01
Chr03	irgsp1_rep	mRNA	9847723	9850384	.	-	.	ID=Os03t0285800-01;Name=Os03t0285800-01;Locus_id=Os03g0285800;CGSNL Gene Symbol=MSRMK2;CGSNL Gene Name=MULTIPLE STRESS RESPONSIVE MAP KINASE 2;Oryzabase Gene Symbol Synonym(s)=OsMSRMK2%2C OsMAPK5%2C OsMAP1%2C OsMPK3%2C OsBIMK1%2C OsMAPK2%2C MPK5%2C BIMK1%2C MAPK2%2C MAPK5%2C MPK3%2C OsMPK5%2C OsMAPK3%2C OsMAPK5b%2C MAPK3;Oryzabase Gene Name Synonym(s)=multiple stress responsive MAP kinase 2%2C Mitogen-activated protein kinase 5%2C MAP kinase 5%2C Benzothiadiazole-induced MAP kinase 1%2C BTH-induced MAPK 1%2C MAP kinase 2%2C Multiple stress-responsive MAP kinase 2%2C MAP kinase 3;Note=MAP Kinase.;Transcript_evidence=AK067339 (DDBJ%2C Best hit);ORF_evidence=Q10N20 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: MAP kinase activity (GO:0004707),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),MAP kinase%2C conserved site (IPR003527),Serine/threonine-protein kinase%2C active site (IPR008271),JNK MAP kinase (IPR008351),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013102O17;Oryzabase=6224;TENOR=Os03t0285800-01
Chr03	irgsp1_rep	five_prime_UTR	9850197	9850384	.	-	.	Parent=Os03t0285800-01
Chr03	irgsp1_rep	CDS	9850045	9850196	.	-	0	Parent=Os03t0285800-01
Chr03	irgsp1_rep	CDS	9849601	9849730	.	-	1	Parent=Os03t0285800-01
Chr03	irgsp1_rep	CDS	9849349	9849486	.	-	0	Parent=Os03t0285800-01
Chr03	irgsp1_rep	CDS	9848885	9849217	.	-	0	Parent=Os03t0285800-01
Chr03	irgsp1_rep	CDS	9848617	9848800	.	-	0	Parent=Os03t0285800-01
Chr03	irgsp1_rep	CDS	9847914	9848086	.	-	2	Parent=Os03t0285800-01
Chr03	irgsp1_rep	three_prime_UTR	9847723	9847913	.	-	.	Parent=Os03t0285800-01
Chr03	irgsp1_rep	mRNA	9847723	9850305	.	-	.	ID=Os03t0285800-02;Name=Os03t0285800-02;Locus_id=Os03g0285800;CGSNL Gene Symbol=MSRMK2;CGSNL Gene Name=MULTIPLE STRESS RESPONSIVE MAP KINASE 2;Oryzabase Gene Symbol Synonym(s)=OsMSRMK2%2C OsMAPK5%2C OsMAP1%2C OsMPK3%2C OsBIMK1%2C OsMAPK2%2C MPK5%2C BIMK1%2C MAPK2%2C MAPK5%2C MPK3%2C OsMPK5%2C OsMAPK3%2C OsMAPK5b%2C MAPK3;Oryzabase Gene Name Synonym(s)=multiple stress responsive MAP kinase 2%2C Mitogen-activated protein kinase 5%2C MAP kinase 5%2C Benzothiadiazole-induced MAP kinase 1%2C BTH-induced MAPK 1%2C MAP kinase 2%2C Multiple stress-responsive MAP kinase 2%2C MAP kinase 3;Note=MAP Kinase.;Transcript_evidence=AK104834 (DDBJ%2C Best hit);ORF_evidence=Q10N20 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: MAP kinase activity (GO:0004707),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),MAP kinase%2C conserved site (IPR003527),Serine/threonine-protein kinase%2C active site (IPR008271),JNK MAP kinase (IPR008351),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-042-B07;Oryzabase=6224;TENOR=Os03t0285800-02
Chr03	irgsp1_rep	five_prime_UTR	9850197	9850305	.	-	.	Parent=Os03t0285800-02
Chr03	irgsp1_rep	CDS	9850045	9850196	.	-	0	Parent=Os03t0285800-02
Chr03	irgsp1_rep	CDS	9849601	9849730	.	-	1	Parent=Os03t0285800-02
Chr03	irgsp1_rep	CDS	9849349	9849486	.	-	0	Parent=Os03t0285800-02
Chr03	irgsp1_rep	CDS	9848885	9849217	.	-	0	Parent=Os03t0285800-02
Chr03	irgsp1_rep	CDS	9848617	9848800	.	-	0	Parent=Os03t0285800-02
Chr03	irgsp1_rep	CDS	9847914	9848086	.	-	2	Parent=Os03t0285800-02
Chr03	irgsp1_rep	three_prime_UTR	9847723	9847913	.	-	.	Parent=Os03t0285800-02
Chr03	irgsp1_rep	mRNA	9849591	9850194	.	+	.	ID=Os03t0285850-00;Name=Os03t0285850-00;Locus_id=Os03g0285850;Note=Non-protein coding transcript.;Transcript_evidence=EU950357 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0285850-00
Chr03	irgsp1_rep	exon	9849591	9849813	.	+	.	Parent=Os03t0285850-00
Chr03	irgsp1_rep	exon	9850048	9850194	.	+	.	Parent=Os03t0285850-00
Chr03	irgsp1_rep	mRNA	9852813	9856006	.	-	.	ID=Os03t0285900-01;Name=Os03t0285900-01;Locus_id=Os03g0285900;CGSNL Gene Symbol=RSZP37B;Oryzabase Gene Symbol Synonym(s)=Os-RS2Z38%2C OsRS2Z38%2C Os-RSZ37b%2C OsRSZ37b;Oryzabase Gene Name Synonym(s)=RS domain with zinc knuckle protein 37b%2C RSZ subfamily protein 37b%2C RS2Z subfamily protein 38;Note=Similar to Splicing factor RSZ33.;Transcript_evidence=AK073348 (DDBJ%2C Best hit);ORF_evidence=Q2QKC1 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA recognition motif domain (IPR000504),Zinc finger%2C CCHC-type (IPR001878),Nucleotide-binding%2C alpha-beta plait (IPR012677),Zinc finger%2C CCHC retroviral-type (IPR013084);NIAS_FLcDNA=J033025D08;Oryzabase=22748;Expression=AK073348;TENOR=Os03t0285900-01;KEGG=Os03t0285900-01
Chr03	irgsp1_rep	five_prime_UTR	9855901	9856006	.	-	.	Parent=Os03t0285900-01
Chr03	irgsp1_rep	five_prime_UTR	9855207	9855209	.	-	.	Parent=Os03t0285900-01
Chr03	irgsp1_rep	CDS	9855100	9855206	.	-	0	Parent=Os03t0285900-01
Chr03	irgsp1_rep	CDS	9854348	9854387	.	-	1	Parent=Os03t0285900-01
Chr03	irgsp1_rep	CDS	9854134	9854229	.	-	0	Parent=Os03t0285900-01
Chr03	irgsp1_rep	CDS	9853797	9853996	.	-	0	Parent=Os03t0285900-01
Chr03	irgsp1_rep	CDS	9853600	9853695	.	-	1	Parent=Os03t0285900-01
Chr03	irgsp1_rep	CDS	9853014	9853467	.	-	1	Parent=Os03t0285900-01
Chr03	irgsp1_rep	three_prime_UTR	9852813	9853013	.	-	.	Parent=Os03t0285900-01
Chr03	irgsp1_rep	mRNA	9856618	9860947	.	+	.	ID=Os03t0286100-00;Name=Os03t0286100-00;Locus_id=Os03g0286100;Note=Similar to protein binding protein.;Transcript_evidence=AK359867 (DDBJ);ORF_evidence=NP_001148003.1 (RefSeq);TENOR=Os03t0286100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	9856618	9857066	.	+	0	Parent=Os03t0286100-00
Chr03	irgsp1_rep	CDS	9860566	9860872	.	+	1	Parent=Os03t0286100-00
Chr03	irgsp1_rep	three_prime_UTR	9860873	9860947	.	+	.	Parent=Os03t0286100-00
Chr03	irgsp1_rep	mRNA	9863844	9868595	.	+	.	ID=Os03t0286200-01;Name=Os03t0286200-01;Locus_id=Os03g0286200;Note=Similar to Prephenate dehydratase-like.;Transcript_evidence=AK066644 (DDBJ%2C Best hit);ORF_evidence=B6SYB7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: L-phenylalanine biosynthetic process (GO:0009094),Molecular Function: prephenate dehydratase activity (GO:0004664),Molecular Function: amino acid binding (GO:0016597);InterPro=Prephenate dehydratase (IPR001086),Amino acid-binding ACT (IPR002912),Prephenate dehydratase%2C conserved site (IPR018528);NIAS_FLcDNA=J013071M17;Expression=AK066644;TENOR=Os03t0286200-01;KEGG=Os03t0286200-01 (EC:4.2.1.51)
Chr03	irgsp1_rep	five_prime_UTR	9863844	9863976	.	+	.	Parent=Os03t0286200-01
Chr03	irgsp1_rep	CDS	9863977	9864262	.	+	0	Parent=Os03t0286200-01
Chr03	irgsp1_rep	CDS	9864389	9864450	.	+	2	Parent=Os03t0286200-01
Chr03	irgsp1_rep	CDS	9864589	9864681	.	+	0	Parent=Os03t0286200-01
Chr03	irgsp1_rep	CDS	9865583	9865783	.	+	0	Parent=Os03t0286200-01
Chr03	irgsp1_rep	CDS	9865866	9865949	.	+	0	Parent=Os03t0286200-01
Chr03	irgsp1_rep	CDS	9866092	9866187	.	+	0	Parent=Os03t0286200-01
Chr03	irgsp1_rep	CDS	9866262	9866339	.	+	0	Parent=Os03t0286200-01
Chr03	irgsp1_rep	CDS	9866442	9866531	.	+	0	Parent=Os03t0286200-01
Chr03	irgsp1_rep	CDS	9866627	9866694	.	+	0	Parent=Os03t0286200-01
Chr03	irgsp1_rep	CDS	9866834	9866915	.	+	1	Parent=Os03t0286200-01
Chr03	irgsp1_rep	CDS	9866984	9867043	.	+	0	Parent=Os03t0286200-01
Chr03	irgsp1_rep	three_prime_UTR	9867044	9867074	.	+	.	Parent=Os03t0286200-01
Chr03	irgsp1_rep	three_prime_UTR	9868097	9868595	.	+	.	Parent=Os03t0286200-01
Chr03	irgsp1_rep	mRNA	9865656	9868646	.	+	.	ID=Os03t0286200-02;Name=Os03t0286200-02;Locus_id=Os03g0286200;Note=Similar to P-protein.;Transcript_evidence=AK105065 (DDBJ%2C Best hit);ORF_evidence=B6SYB7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: L-phenylalanine biosynthetic process (GO:0009094),Molecular Function: prephenate dehydratase activity (GO:0004664),Molecular Function: amino acid binding (GO:0016597);InterPro=Prephenate dehydratase (IPR001086),Amino acid-binding ACT (IPR002912),Prephenate dehydratase%2C conserved site (IPR018528);NIAS_FLcDNA=001-044-F05;Expression=AK105065;TENOR=Os03t0286200-02;KEGG=Os03t0286200-02 (EC:4.2.1.51)
Chr03	irgsp1_rep	five_prime_UTR	9865656	9865657	.	+	.	Parent=Os03t0286200-02
Chr03	irgsp1_rep	CDS	9865658	9865783	.	+	0	Parent=Os03t0286200-02
Chr03	irgsp1_rep	CDS	9865866	9865949	.	+	0	Parent=Os03t0286200-02
Chr03	irgsp1_rep	CDS	9866092	9866187	.	+	0	Parent=Os03t0286200-02
Chr03	irgsp1_rep	CDS	9866262	9866339	.	+	0	Parent=Os03t0286200-02
Chr03	irgsp1_rep	CDS	9866442	9866531	.	+	0	Parent=Os03t0286200-02
Chr03	irgsp1_rep	CDS	9866627	9866694	.	+	0	Parent=Os03t0286200-02
Chr03	irgsp1_rep	CDS	9866834	9866915	.	+	1	Parent=Os03t0286200-02
Chr03	irgsp1_rep	CDS	9866984	9867043	.	+	0	Parent=Os03t0286200-02
Chr03	irgsp1_rep	three_prime_UTR	9867044	9867074	.	+	.	Parent=Os03t0286200-02
Chr03	irgsp1_rep	three_prime_UTR	9868097	9868646	.	+	.	Parent=Os03t0286200-02
Chr03	irgsp1_rep	mRNA	9872301	9876576	.	+	.	ID=Os03t0286300-01;Name=Os03t0286300-01;Locus_id=Os03g0286300;Note=Similar to Phosphate/phosphoenolpyruvate translocator protein-like.;Transcript_evidence=AK058710 (DDBJ%2C Best hit);ORF_evidence=NP_001151135.1 (RefSeq);InterPro=Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=001-019-D05;Expression=AK058710;TENOR=Os03t0286300-01;KEGG=Os03t0286300-01
Chr03	irgsp1_rep	five_prime_UTR	9872301	9872443	.	+	.	Parent=Os03t0286300-01
Chr03	irgsp1_rep	CDS	9872444	9872929	.	+	0	Parent=Os03t0286300-01
Chr03	irgsp1_rep	CDS	9874207	9874310	.	+	0	Parent=Os03t0286300-01
Chr03	irgsp1_rep	CDS	9874480	9874708	.	+	1	Parent=Os03t0286300-01
Chr03	irgsp1_rep	CDS	9876015	9876164	.	+	0	Parent=Os03t0286300-01
Chr03	irgsp1_rep	three_prime_UTR	9876165	9876576	.	+	.	Parent=Os03t0286300-01
Chr03	irgsp1_rep	mRNA	9872456	9876576	.	+	.	ID=Os03t0286300-02;Name=Os03t0286300-02;Locus_id=Os03g0286300;Note=Similar to organic anion transporter.;Transcript_evidence=AK101724 (DDBJ%2C Best hit);ORF_evidence=NP_001151135.1 (RefSeq);InterPro=Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=J033061B10;Expression=AK101724;TENOR=Os03t0286300-02;KEGG=Os03t0286300-02
Chr03	irgsp1_rep	CDS	9872456	9872929	.	+	0	Parent=Os03t0286300-02
Chr03	irgsp1_rep	CDS	9874207	9874310	.	+	0	Parent=Os03t0286300-02
Chr03	irgsp1_rep	CDS	9874480	9874708	.	+	1	Parent=Os03t0286300-02
Chr03	irgsp1_rep	CDS	9876015	9876164	.	+	0	Parent=Os03t0286300-02
Chr03	irgsp1_rep	three_prime_UTR	9876165	9876576	.	+	.	Parent=Os03t0286300-02
Chr03	irgsp1_rep	mRNA	9878106	9880793	.	-	.	ID=Os03t0286500-01;Name=Os03t0286500-01;Locus_id=Os03g0286500;Note=Similar to RNA-binding region containing protein 1 (HSRNASEB) (ssDNA binding protein SEB4) (CLL-associated antigen KW-5). Splice isoform 2.;Transcript_evidence=AK060649 (DDBJ%2C Best hit);ORF_evidence=Q8GZZ8 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-027-H01;Expression=AK060649;TENOR=Os03t0286500-01;KEGG=Os03t0286500-01
Chr03	irgsp1_rep	five_prime_UTR	9880651	9880793	.	-	.	Parent=Os03t0286500-01
Chr03	irgsp1_rep	CDS	9880417	9880650	.	-	0	Parent=Os03t0286500-01
Chr03	irgsp1_rep	CDS	9880122	9880329	.	-	0	Parent=Os03t0286500-01
Chr03	irgsp1_rep	CDS	9879846	9880011	.	-	2	Parent=Os03t0286500-01
Chr03	irgsp1_rep	CDS	9879220	9879259	.	-	1	Parent=Os03t0286500-01
Chr03	irgsp1_rep	CDS	9878836	9879094	.	-	0	Parent=Os03t0286500-01
Chr03	irgsp1_rep	CDS	9878408	9878433	.	-	2	Parent=Os03t0286500-01
Chr03	irgsp1_rep	three_prime_UTR	9878106	9878407	.	-	.	Parent=Os03t0286500-01
Chr03	irgsp1_rep	mRNA	9893421	9896598	.	+	.	ID=Os03t0286800-01;Name=Os03t0286800-01;Locus_id=Os03g0286800;Oryzabase Gene Symbol Synonym(s)=OsWD40-67;Note=Similar to WD and tetratricopeptide repeats protein 1.;Transcript_evidence=AK111707 (DDBJ%2C Best hit);ORF_evidence=XP_002875736.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J023012L17;Oryzabase=10748;Expression=AK111707;TENOR=Os03t0286800-01;KEGG=Os03t0286800-01
Chr03	irgsp1_rep	five_prime_UTR	9893421	9893515	.	+	.	Parent=Os03t0286800-01
Chr03	irgsp1_rep	CDS	9893516	9893635	.	+	0	Parent=Os03t0286800-01
Chr03	irgsp1_rep	CDS	9894247	9894498	.	+	0	Parent=Os03t0286800-01
Chr03	irgsp1_rep	CDS	9895019	9895162	.	+	0	Parent=Os03t0286800-01
Chr03	irgsp1_rep	CDS	9895244	9895918	.	+	0	Parent=Os03t0286800-01
Chr03	irgsp1_rep	CDS	9896011	9896253	.	+	0	Parent=Os03t0286800-01
Chr03	irgsp1_rep	three_prime_UTR	9896254	9896598	.	+	.	Parent=Os03t0286800-01
Chr03	irgsp1_rep	mRNA	9899776	9900385	.	-	.	ID=Os03t0286900-01;Name=Os03t0286900-01;Locus_id=Os03g0286900;RAP-DB Gene Symbol Synonym(s)=OsRCI2-5;RAP-DB Gene Name Synonym(s)=rare cold-inducible 2-5;Oryzabase Gene Symbol Synonym(s)=OsRCI2-5;Oryzabase Gene Name Synonym(s)=rare cold-inducible 2-5;Note=RCI2 (rare cold-inducible 2) family protein%2C Drought resistance;Transcript_evidence=AK070872;ORF_evidence=Q8H001;GO=Cellular Component: integral component of membrane (GO:0016021);InterPro=Proteolipid membrane potential modulator (IPR000612);NIAS_FLcDNA=J023071K01;Manual Curation=December 9%2C 2016;Literature_PMID=24938613;Oryzabase=18166;Expression=AK070872;TENOR=Os03t0286900-01;KEGG=Os03t0286900-01
Chr03	irgsp1_rep	five_prime_UTR	9900293	9900385	.	-	.	Parent=Os03t0286900-01
Chr03	irgsp1_rep	CDS	9900212	9900292	.	-	0	Parent=Os03t0286900-01
Chr03	irgsp1_rep	CDS	9900004	9900087	.	-	0	Parent=Os03t0286900-01
Chr03	irgsp1_rep	three_prime_UTR	9899776	9900003	.	-	.	Parent=Os03t0286900-01
Chr03	irgsp1_rep	mRNA	9904631	9907008	.	-	.	ID=Os03t0287100-01;Name=Os03t0287100-01;Locus_id=Os03g0287100;Note=Similar to Phosphatidylinositol transfer protein%2C expressed.;Transcript_evidence=AK100125 (DDBJ%2C Best hit);ORF_evidence=Q10N10 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: intracellular (GO:0005622);InterPro=Phosphatidylinositol transfer protein (IPR001666),START-like domain (IPR023393);NIAS_FLcDNA=J023008D01;TENOR=Os03t0287100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	9906875	9907008	.	-	.	Parent=Os03t0287100-01
Chr03	irgsp1_rep	CDS	9906855	9906874	.	-	0	Parent=Os03t0287100-01
Chr03	irgsp1_rep	CDS	9906692	9906722	.	-	1	Parent=Os03t0287100-01
Chr03	irgsp1_rep	CDS	9906433	9906581	.	-	0	Parent=Os03t0287100-01
Chr03	irgsp1_rep	CDS	9905926	9906017	.	-	1	Parent=Os03t0287100-01
Chr03	irgsp1_rep	CDS	9905656	9905690	.	-	2	Parent=Os03t0287100-01
Chr03	irgsp1_rep	three_prime_UTR	9905612	9905655	.	-	.	Parent=Os03t0287100-01
Chr03	irgsp1_rep	three_prime_UTR	9905351	9905518	.	-	.	Parent=Os03t0287100-01
Chr03	irgsp1_rep	three_prime_UTR	9905178	9905273	.	-	.	Parent=Os03t0287100-01
Chr03	irgsp1_rep	three_prime_UTR	9904961	9905083	.	-	.	Parent=Os03t0287100-01
Chr03	irgsp1_rep	three_prime_UTR	9904631	9904868	.	-	.	Parent=Os03t0287100-01
Chr03	irgsp1_rep	mRNA	9916095	9917286	.	-	.	ID=Os03t0287400-01;Name=Os03t0287400-01;Locus_id=Os03g0287400;Note=Similar to LOB domain protein 4.;Transcript_evidence=AK072515 (DDBJ%2C Best hit);ORF_evidence=NP_001147202.1 (RefSeq);InterPro=Lateral organ boundaries%2C LOB (IPR004883);NIAS_FLcDNA=J023131K07;Expression=AK072515;TENOR=Os03t0287400-01;KEGG=Os03t0287400-01
Chr03	irgsp1_rep	five_prime_UTR	9917205	9917286	.	-	.	Parent=Os03t0287400-01
Chr03	irgsp1_rep	CDS	9916878	9917204	.	-	0	Parent=Os03t0287400-01
Chr03	irgsp1_rep	CDS	9916390	9916782	.	-	0	Parent=Os03t0287400-01
Chr03	irgsp1_rep	three_prime_UTR	9916095	9916389	.	-	.	Parent=Os03t0287400-01
Chr03	irgsp1_rep	mRNA	9934970	9940040	.	-	.	ID=Os03t0287500-00;Name=Os03t0287500-00;Locus_id=Os03g0287500;Note=Hypothetical protein.;Transcript_evidence=tplb0036a04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0287500-00
Chr03	irgsp1_rep	five_prime_UTR	9939965	9940040	.	-	.	Parent=Os03t0287500-00
Chr03	irgsp1_rep	CDS	9939695	9939964	.	-	0	Parent=Os03t0287500-00
Chr03	irgsp1_rep	three_prime_UTR	9939467	9939694	.	-	.	Parent=Os03t0287500-00
Chr03	irgsp1_rep	three_prime_UTR	9937227	9937400	.	-	.	Parent=Os03t0287500-00
Chr03	irgsp1_rep	three_prime_UTR	9935182	9936669	.	-	.	Parent=Os03t0287500-00
Chr03	irgsp1_rep	three_prime_UTR	9934970	9935064	.	-	.	Parent=Os03t0287500-00
Chr03	irgsp1_rep	mRNA	9935309	9937411	.	+	.	ID=Os03t0287600-00;Name=Os03t0287600-00;Locus_id=Os03g0287600;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3AGU1 (UniProt);TENOR=Os03t0287600-00
Chr03	irgsp1_rep	CDS	9935309	9936658	.	+	0	Parent=Os03t0287600-00
Chr03	irgsp1_rep	CDS	9937214	9937411	.	+	0	Parent=Os03t0287600-00
Chr03	irgsp1_rep	mRNA	9939661	9940509	.	+	.	ID=Os03t0287700-01;Name=Os03t0287700-01;Locus_id=Os03g0287700;Note=Conserved hypothetical protein.;Transcript_evidence=AK058301 (DDBJ%2C Best hit);ORF_evidence=Q10N06 (UniProt);NIAS_FLcDNA=001-013-F12;Expression=AK058301;TENOR=Os03t0287700-01;KEGG=Os03t0287700-01
Chr03	irgsp1_rep	five_prime_UTR	9939661	9939662	.	+	.	Parent=Os03t0287700-01
Chr03	irgsp1_rep	CDS	9939663	9940058	.	+	0	Parent=Os03t0287700-01
Chr03	irgsp1_rep	three_prime_UTR	9940059	9940509	.	+	.	Parent=Os03t0287700-01
Chr03	irgsp1_rep	mRNA	9946167	9947233	.	-	.	ID=Os03t0287750-00;Name=Os03t0287750-00;Locus_id=Os03g0287750;Note=Hypothetical protein.;Transcript_evidence=BT034702 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0287750-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	9947141	9947233	.	-	.	Parent=Os03t0287750-00
Chr03	irgsp1_rep	CDS	9946439	9947140	.	-	0	Parent=Os03t0287750-00
Chr03	irgsp1_rep	three_prime_UTR	9946167	9946438	.	-	.	Parent=Os03t0287750-00
Chr03	irgsp1_rep	mRNA	9946578	9949629	.	+	.	ID=Os03t0287800-00;Name=Os03t0287800-00;Locus_id=Os03g0287800;Oryzabase Gene Symbol Synonym(s)=OsGT43B;Oryzabase Gene Name Synonym(s)=glycosyltransferase family GT43 member B;Note=Similar to beta3-glucuronyltransferase.;Transcript_evidence=BT036881 (DDBJ);ORF_evidence=NP_001147664.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020),Molecular Function: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity (GO:0015018);InterPro=Glycosyl transferase%2C family 43 (IPR005027);Oryzabase=18478;TENOR=Os03t0287800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	9946578	9947230	.	+	0	Parent=Os03t0287800-00
Chr03	irgsp1_rep	CDS	9949113	9949629	.	+	1	Parent=Os03t0287800-00
Chr03	irgsp1_rep	mRNA	9952865	9955129	.	-	.	ID=Os03t0287900-01;Name=Os03t0287900-01;Locus_id=Os03g0287900;Oryzabase Gene Symbol Synonym(s)=PDIL5%3B1%2C PDIL5-1%2C PDIL 5-1%2C OsPDIL5-1;Oryzabase Gene Name Synonym(s)=PROTEIN DISULFIDE ISOMERASE-LIKE 5%3B1%2C PROTEIN DISULFIDE ISOMERASE-LIKE 5-1%2C PDI-like protein 5-1;Note=Similar to Protein disulfide isomerase.;Transcript_evidence=AK063663 (DDBJ%2C Best hit);ORF_evidence=Q10N04 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454);InterPro=Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766);NIAS_FLcDNA=001-119-C07;Oryzabase=11902;Expression=AK063663;TENOR=Os03t0287900-01;KEGG=Os03t0287900-01 (EC:5.3.4.1)
Chr03	irgsp1_rep	five_prime_UTR	9955080	9955129	.	-	.	Parent=Os03t0287900-01
Chr03	irgsp1_rep	CDS	9954954	9955079	.	-	0	Parent=Os03t0287900-01
Chr03	irgsp1_rep	CDS	9954331	9954389	.	-	0	Parent=Os03t0287900-01
Chr03	irgsp1_rep	CDS	9954057	9954232	.	-	1	Parent=Os03t0287900-01
Chr03	irgsp1_rep	CDS	9953057	9953139	.	-	2	Parent=Os03t0287900-01
Chr03	irgsp1_rep	three_prime_UTR	9952865	9953056	.	-	.	Parent=Os03t0287900-01
Chr03	irgsp1_rep	mRNA	9957175	9958291	.	+	.	ID=Os03t0288000-01;Name=Os03t0288000-01;Locus_id=Os03g0288000;CGSNL Gene Symbol=MTI1B;CGSNL Gene Name=METALLOTHIONEIN I-1B;Oryzabase Gene Symbol Synonym(s)=OsMT1b%2C MT1b%2C OsMT-I-1b%2C OsMTI-1b%2C MT-I-1b%2C MTI-1b%2C MT1La%2C OsMT1La%2C OsMT1;Oryzabase Gene Name Synonym(s)=Metallothionein 1b%2C type 1 metallothionein b%2C Metallothionein type 1-like protein a;Note=Similar to Metallothionein.;Transcript_evidence=AK103162 (DDBJ%2C Best hit);ORF_evidence=A2XFE5 (UniProt);GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Metallothionein%2C family 15%2C plant (IPR000347);NIAS_FLcDNA=J033121D09;Oryzabase=11115;Expression=AK103162;TENOR=Os03t0288000-01;KEGG=Os03t0288000-01
Chr03	irgsp1_rep	five_prime_UTR	9957175	9957428	.	+	.	Parent=Os03t0288000-01
Chr03	irgsp1_rep	CDS	9957429	9957481	.	+	0	Parent=Os03t0288000-01
Chr03	irgsp1_rep	CDS	9957848	9958013	.	+	1	Parent=Os03t0288000-01
Chr03	irgsp1_rep	three_prime_UTR	9958014	9958291	.	+	.	Parent=Os03t0288000-01
Chr03	irgsp1_rep	mRNA	9957356	9958134	.	+	.	ID=Os03t0288000-02;Name=Os03t0288000-02;Locus_id=Os03g0288000;CGSNL Gene Symbol=MTI1B;CGSNL Gene Name=METALLOTHIONEIN I-1B;Oryzabase Gene Symbol Synonym(s)=OsMT1b%2C MT1b%2C OsMT-I-1b%2C OsMTI-1b%2C MT-I-1b%2C MTI-1b%2C MT1La%2C OsMT1La%2C OsMT1;Oryzabase Gene Name Synonym(s)=Metallothionein 1b%2C type 1 metallothionein b%2C Metallothionein type 1-like protein a;Note=Similar to Metallothionein.;Transcript_evidence=AK059587 (DDBJ%2C Best hit);ORF_evidence=A2XFE5 (UniProt);GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Metallothionein%2C family 15%2C plant (IPR000347);NIAS_FLcDNA=001-030-B12;Oryzabase=11115;Expression=AK059587;TENOR=Os03t0288000-02;KEGG=Os03t0288000-02
Chr03	irgsp1_rep	five_prime_UTR	9957356	9957428	.	+	.	Parent=Os03t0288000-02
Chr03	irgsp1_rep	CDS	9957429	9957481	.	+	0	Parent=Os03t0288000-02
Chr03	irgsp1_rep	CDS	9957848	9958013	.	+	1	Parent=Os03t0288000-02
Chr03	irgsp1_rep	three_prime_UTR	9958014	9958134	.	+	.	Parent=Os03t0288000-02
Chr03	irgsp1_rep	mRNA	9957806	9958105	.	-	.	ID=Os03t0288051-00;Name=Os03t0288051-00;Locus_id=Os03g0288051;Note=Conserved hypothetical protein.;Transcript_evidence=EF558903 (DDBJ);ORF_evidence=C4J3L9 (UniProt);TENOR=Os03t0288051-00
Chr03	irgsp1_rep	five_prime_UTR	9958010	9958105	.	-	.	Parent=Os03t0288051-00
Chr03	irgsp1_rep	CDS	9957806	9958009	.	-	0	Parent=Os03t0288051-00
Chr03	irgsp1_rep	mRNA	9960775	9962217	.	+	.	ID=Os03t0288101-01;Name=Os03t0288101-01;Locus_id=Os03g0288101;Note=Conserved hypothetical protein.;Transcript_evidence=AK241261 (DDBJ%2C Best hit);ORF_evidence=Q10PM4 (UniProt);NIAS_FLcDNA=J065131H13;TENOR=Os03t0288101-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	9960775	9961214	.	+	.	Parent=Os03t0288101-01
Chr03	irgsp1_rep	five_prime_UTR	9961290	9961726	.	+	.	Parent=Os03t0288101-01
Chr03	irgsp1_rep	five_prime_UTR	9962021	9962039	.	+	.	Parent=Os03t0288101-01
Chr03	irgsp1_rep	CDS	9962040	9962204	.	+	0	Parent=Os03t0288101-01
Chr03	irgsp1_rep	three_prime_UTR	9962205	9962217	.	+	.	Parent=Os03t0288101-01
Chr03	irgsp1_rep	mRNA	9972495	9977760	.	+	.	ID=Os03t0288300-01;Name=Os03t0288300-01;Locus_id=Os03g0288300;Note=Alpha/beta hydrolase fold-1 domain containing protein.;Transcript_evidence=AK100369 (DDBJ%2C Best hit);ORF_evidence=Q6L459 (UniProt);NIAS_FLcDNA=J023084A05;Expression=AK100369;TENOR=Os03t0288300-01;KEGG=Os03t0288300-01
Chr03	irgsp1_rep	five_prime_UTR	9972495	9972660	.	+	.	Parent=Os03t0288300-01
Chr03	irgsp1_rep	CDS	9972661	9973090	.	+	0	Parent=Os03t0288300-01
Chr03	irgsp1_rep	CDS	9973879	9974070	.	+	2	Parent=Os03t0288300-01
Chr03	irgsp1_rep	CDS	9974161	9974400	.	+	2	Parent=Os03t0288300-01
Chr03	irgsp1_rep	CDS	9975291	9975508	.	+	2	Parent=Os03t0288300-01
Chr03	irgsp1_rep	CDS	9976178	9976429	.	+	0	Parent=Os03t0288300-01
Chr03	irgsp1_rep	CDS	9977026	9977304	.	+	0	Parent=Os03t0288300-01
Chr03	irgsp1_rep	three_prime_UTR	9977305	9977760	.	+	.	Parent=Os03t0288300-01
Chr03	irgsp1_rep	mRNA	9974285	9977763	.	+	.	ID=Os03t0288300-02;Name=Os03t0288300-02;Locus_id=Os03g0288300;Note=Similar to predicted protein.;Transcript_evidence=AK061155 (DDBJ%2C Best hit);ORF_evidence=Q6L459 (UniProt);NIAS_FLcDNA=006-208-F11;Expression=AK061155;TENOR=Os03t0288300-02;KEGG=Os03t0288300-02
Chr03	irgsp1_rep	five_prime_UTR	9974285	9974285	.	+	.	Parent=Os03t0288300-02
Chr03	irgsp1_rep	CDS	9974286	9974400	.	+	0	Parent=Os03t0288300-02
Chr03	irgsp1_rep	CDS	9975291	9975508	.	+	2	Parent=Os03t0288300-02
Chr03	irgsp1_rep	CDS	9976178	9976429	.	+	0	Parent=Os03t0288300-02
Chr03	irgsp1_rep	CDS	9977026	9977304	.	+	0	Parent=Os03t0288300-02
Chr03	irgsp1_rep	three_prime_UTR	9977305	9977763	.	+	.	Parent=Os03t0288300-02
Chr03	irgsp1_rep	mRNA	9978906	9980978	.	+	.	ID=Os03t0288400-01;Name=Os03t0288400-01;Locus_id=Os03g0288400;Note=Similar to kinesin like protein.;Transcript_evidence=AK287922 (DDBJ%2C Best hit);ORF_evidence=NP_001146939.1 (RefSeq);NIAS_FLcDNA=J065217K09;TENOR=Os03t0288400-01;KEGG=Os03t0288400-01
Chr03	irgsp1_rep	five_prime_UTR	9978906	9979205	.	+	.	Parent=Os03t0288400-01
Chr03	irgsp1_rep	five_prime_UTR	9979982	9979993	.	+	.	Parent=Os03t0288400-01
Chr03	irgsp1_rep	CDS	9979994	9980163	.	+	0	Parent=Os03t0288400-01
Chr03	irgsp1_rep	CDS	9980281	9980410	.	+	1	Parent=Os03t0288400-01
Chr03	irgsp1_rep	CDS	9980510	9980578	.	+	0	Parent=Os03t0288400-01
Chr03	irgsp1_rep	three_prime_UTR	9980579	9980978	.	+	.	Parent=Os03t0288400-01
Chr03	irgsp1_rep	mRNA	9981700	9986561	.	+	.	ID=Os03t0288500-01;Name=Os03t0288500-01;Locus_id=Os03g0288500;Note=Pseudouridine synthase domain containing protein.;Transcript_evidence=AK065443 (DDBJ%2C Best hit);ORF_evidence=B6T6Q0 (UniProt);GO=Biological Process: pseudouridine synthesis (GO:0001522),Biological Process: RNA modification (GO:0009451),Molecular Function: RNA binding (GO:0003723),Molecular Function: pseudouridine synthase activity (GO:0009982);InterPro=Pseudouridine synthase%2C RsuA and RluB/C/D/E/F (IPR006145),Pseudouridine synthase%2C catalytic domain (IPR020103);NIAS_FLcDNA=J013021O06;Expression=AK065443;TENOR=Os03t0288500-01;KEGG=Os03t0288500-01
Chr03	irgsp1_rep	CDS	9981700	9981750	.	+	0	Parent=Os03t0288500-01
Chr03	irgsp1_rep	CDS	9982102	9982148	.	+	0	Parent=Os03t0288500-01
Chr03	irgsp1_rep	CDS	9982260	9982350	.	+	1	Parent=Os03t0288500-01
Chr03	irgsp1_rep	CDS	9982632	9982931	.	+	0	Parent=Os03t0288500-01
Chr03	irgsp1_rep	three_prime_UTR	9982932	9984390	.	+	.	Parent=Os03t0288500-01
Chr03	irgsp1_rep	three_prime_UTR	9984517	9984586	.	+	.	Parent=Os03t0288500-01
Chr03	irgsp1_rep	three_prime_UTR	9985363	9985447	.	+	.	Parent=Os03t0288500-01
Chr03	irgsp1_rep	three_prime_UTR	9985565	9986561	.	+	.	Parent=Os03t0288500-01
Chr03	irgsp1_rep	mRNA	9987257	9990388	.	+	.	ID=Os03t0288600-01;Name=Os03t0288600-01;Locus_id=Os03g0288600;Oryzabase Gene Symbol Synonym(s)=SIP6;Oryzabase Gene Name Synonym(s)=muscle derived-like protein%2C SKIP interacting protein 6%2C SKIPa-interacting protein 6%2C SKIPa-interacting protein 6;Note=Muscle derived-like protein.;Transcript_evidence=AK101532 (DDBJ%2C Best hit);ORF_evidence=B8Q892 (UniProt);InterPro=Taxilin (IPR019132);NIAS_FLcDNA=J033048A15;Oryzabase=16281;Expression=AK101532;TENOR=Os03t0288600-01;KEGG=Os03t0288600-01
Chr03	irgsp1_rep	five_prime_UTR	9987257	9987278	.	+	.	Parent=Os03t0288600-01
Chr03	irgsp1_rep	CDS	9987279	9987606	.	+	0	Parent=Os03t0288600-01
Chr03	irgsp1_rep	CDS	9987685	9987782	.	+	2	Parent=Os03t0288600-01
Chr03	irgsp1_rep	CDS	9987879	9987985	.	+	0	Parent=Os03t0288600-01
Chr03	irgsp1_rep	CDS	9988430	9988502	.	+	1	Parent=Os03t0288600-01
Chr03	irgsp1_rep	CDS	9988589	9988666	.	+	0	Parent=Os03t0288600-01
Chr03	irgsp1_rep	CDS	9988779	9988843	.	+	0	Parent=Os03t0288600-01
Chr03	irgsp1_rep	CDS	9989024	9989090	.	+	1	Parent=Os03t0288600-01
Chr03	irgsp1_rep	CDS	9989238	9989420	.	+	0	Parent=Os03t0288600-01
Chr03	irgsp1_rep	CDS	9989584	9989640	.	+	0	Parent=Os03t0288600-01
Chr03	irgsp1_rep	CDS	9989751	9989846	.	+	0	Parent=Os03t0288600-01
Chr03	irgsp1_rep	CDS	9989955	9990113	.	+	0	Parent=Os03t0288600-01
Chr03	irgsp1_rep	three_prime_UTR	9990114	9990388	.	+	.	Parent=Os03t0288600-01
Chr03	irgsp1_rep	mRNA	9987338	9990332	.	+	.	ID=Os03t0288600-02;Name=Os03t0288600-02;Locus_id=Os03g0288600;Oryzabase Gene Symbol Synonym(s)=SIP6;Oryzabase Gene Name Synonym(s)=muscle derived-like protein%2C SKIP interacting protein 6%2C SKIPa-interacting protein 6%2C SKIPa-interacting protein 6;Note=Similar to SKIP interacting protein 6.;Transcript_evidence=AK065540 (DDBJ%2C Best hit);ORF_evidence=B8Q892 (UniProt);InterPro=Taxilin (IPR019132);NIAS_FLcDNA=J013028I23;Oryzabase=16281;Expression=AK065540;TENOR=Os03t0288600-02;KEGG=Os03t0288600-02
Chr03	irgsp1_rep	five_prime_UTR	9987338	9987338	.	+	.	Parent=Os03t0288600-02
Chr03	irgsp1_rep	CDS	9987339	9987606	.	+	0	Parent=Os03t0288600-02
Chr03	irgsp1_rep	CDS	9987703	9987782	.	+	2	Parent=Os03t0288600-02
Chr03	irgsp1_rep	CDS	9987879	9987985	.	+	0	Parent=Os03t0288600-02
Chr03	irgsp1_rep	CDS	9988430	9988502	.	+	1	Parent=Os03t0288600-02
Chr03	irgsp1_rep	CDS	9988589	9988666	.	+	0	Parent=Os03t0288600-02
Chr03	irgsp1_rep	CDS	9988779	9988843	.	+	0	Parent=Os03t0288600-02
Chr03	irgsp1_rep	CDS	9989024	9989090	.	+	1	Parent=Os03t0288600-02
Chr03	irgsp1_rep	CDS	9989238	9989420	.	+	0	Parent=Os03t0288600-02
Chr03	irgsp1_rep	CDS	9989584	9989640	.	+	0	Parent=Os03t0288600-02
Chr03	irgsp1_rep	CDS	9989751	9989846	.	+	0	Parent=Os03t0288600-02
Chr03	irgsp1_rep	CDS	9989955	9990113	.	+	0	Parent=Os03t0288600-02
Chr03	irgsp1_rep	three_prime_UTR	9990114	9990332	.	+	.	Parent=Os03t0288600-02
Chr03	irgsp1_rep	mRNA	9990513	9993307	.	-	.	ID=Os03t0288700-01;Name=Os03t0288700-01;Locus_id=Os03g0288700;Note=Phosphatidic acid phosphatase type 2/haloperoxidase domain containing protein.;Transcript_evidence=AK110718 (DDBJ%2C Best hit);ORF_evidence=B6UB05 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824);InterPro=Phosphatidic acid phosphatase type 2/haloperoxidase (IPR000326),Phosphatidic acid phosphatase/chloroperoxidase%2C N-terminal (IPR016118);NIAS_FLcDNA=002-170-D09;Expression=AK110718;TENOR=Os03t0288700-01;KEGG=Os03t0288700-01 (EC:3.6.1.43)
Chr03	irgsp1_rep	five_prime_UTR	9993127	9993307	.	-	.	Parent=Os03t0288700-01
Chr03	irgsp1_rep	CDS	9992659	9993126	.	-	0	Parent=Os03t0288700-01
Chr03	irgsp1_rep	CDS	9991209	9991415	.	-	0	Parent=Os03t0288700-01
Chr03	irgsp1_rep	three_prime_UTR	9991205	9991208	.	-	.	Parent=Os03t0288700-01
Chr03	irgsp1_rep	three_prime_UTR	9990513	9990849	.	-	.	Parent=Os03t0288700-01
Chr03	irgsp1_rep	mRNA	9994917	9998844	.	+	.	ID=Os03t0288800-01;Name=Os03t0288800-01;Locus_id=Os03g0288800;Note=CytoChrome B561-related domain containing protein.;Transcript_evidence=AK072700 (DDBJ%2C Best hit);ORF_evidence=B8ALK7 (UniProt);InterPro=CytoChrome B561-related (IPR019176);NIAS_FLcDNA=J023135G07;Expression=AK072700;TENOR=Os03t0288800-01;KEGG=Os03t0288800-01
Chr03	irgsp1_rep	five_prime_UTR	9994917	9995143	.	+	.	Parent=Os03t0288800-01
Chr03	irgsp1_rep	CDS	9995144	9995334	.	+	0	Parent=Os03t0288800-01
Chr03	irgsp1_rep	CDS	9995442	9995497	.	+	1	Parent=Os03t0288800-01
Chr03	irgsp1_rep	CDS	9995789	9996639	.	+	2	Parent=Os03t0288800-01
Chr03	irgsp1_rep	CDS	9996742	9996940	.	+	0	Parent=Os03t0288800-01
Chr03	irgsp1_rep	CDS	9997140	9997319	.	+	2	Parent=Os03t0288800-01
Chr03	irgsp1_rep	CDS	9997485	9997861	.	+	2	Parent=Os03t0288800-01
Chr03	irgsp1_rep	CDS	9998519	9998659	.	+	0	Parent=Os03t0288800-01
Chr03	irgsp1_rep	three_prime_UTR	9998660	9998844	.	+	.	Parent=Os03t0288800-01
Chr03	irgsp1_rep	mRNA	9999638	10002736	.	+	.	ID=Os03t0288900-01;Name=Os03t0288900-01;Locus_id=Os03g0288900;Note=Hypothetical protein.;Transcript_evidence=AK100329 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J023080H15;TENOR=Os03t0288900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	9999638	9999638	.	+	.	Parent=Os03t0288900-01
Chr03	irgsp1_rep	CDS	9999639	9999762	.	+	0	Parent=Os03t0288900-01
Chr03	irgsp1_rep	CDS	9999859	9999976	.	+	2	Parent=Os03t0288900-01
Chr03	irgsp1_rep	CDS	10000080	10000722	.	+	1	Parent=Os03t0288900-01
Chr03	irgsp1_rep	CDS	10001040	10001829	.	+	0	Parent=Os03t0288900-01
Chr03	irgsp1_rep	CDS	10001908	10001945	.	+	2	Parent=Os03t0288900-01
Chr03	irgsp1_rep	CDS	10002315	10002323	.	+	0	Parent=Os03t0288900-01
Chr03	irgsp1_rep	three_prime_UTR	10002324	10002736	.	+	.	Parent=Os03t0288900-01
Chr03	irgsp1_rep	mRNA	10006390	10012024	.	+	.	ID=Os03t0289100-01;Name=Os03t0289100-01;Locus_id=Os03g0289100;RAP-DB Gene Symbol Synonym(s)=OSK3%2C osk3%2C OsATG1b%2C ATG1B%2C OSK5%2C osk5%2C OSK35%2C SnRK1b;RAP-DB Gene Name Synonym(s)=PROTEIN KINASE 3%2C protein kinase 3%2C autophagy 1b%2C AUTOPHAGY ASSOCIATED GENE 1B%2C protein kinase 5%2C sucrose non-fermenting-1 related protein kinase 1b;CGSNL Gene Symbol=OSK3;CGSNL Gene Name=PROTEIN KINASE 3;Oryzabase Gene Symbol Synonym(s)=osk3%2C OsATG1b%2C ATG1B%2C OSK5%2C osk5%2C OSK35%2C SnRK1b%2C OsK35;Oryzabase Gene Name Synonym(s)=protein kinase 3%2C autophagy 1b%2C AUTOPHAGY ASSOCIATED GENE 1B%2C protein kinase 5%2C sucrose non-fermenting-1 related protein kinase 1b;Note=Serine/threonine protein kinase%2C Carbohydrate metabolism;Transcript_evidence=D82036 (Genbank),D82038 (Genbank),AB101657 (Genbank);ORF_evidence=Q9ZNT4 (UniProt),Q852Q0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Kinase-associated KA1 (IPR001772),Serine/threonine- / dual-specificity protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (IPR015940),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Manual Curation=August 10%2C 2009;Literature_PMID=9870704,16087344;Oryzabase=6184;TENOR=Os03t0289100-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	10006390	10006552	.	+	.	Parent=Os03t0289100-01
Chr03	irgsp1_rep	five_prime_UTR	10008082	10008086	.	+	.	Parent=Os03t0289100-01
Chr03	irgsp1_rep	CDS	10008087	10008270	.	+	0	Parent=Os03t0289100-01
Chr03	irgsp1_rep	CDS	10008555	10008739	.	+	2	Parent=Os03t0289100-01
Chr03	irgsp1_rep	CDS	10009178	10009360	.	+	0	Parent=Os03t0289100-01
Chr03	irgsp1_rep	CDS	10009458	10009589	.	+	0	Parent=Os03t0289100-01
Chr03	irgsp1_rep	CDS	10009720	10009905	.	+	0	Parent=Os03t0289100-01
Chr03	irgsp1_rep	CDS	10010275	10010364	.	+	0	Parent=Os03t0289100-01
Chr03	irgsp1_rep	CDS	10010434	10010517	.	+	0	Parent=Os03t0289100-01
Chr03	irgsp1_rep	CDS	10010598	10010738	.	+	0	Parent=Os03t0289100-01
Chr03	irgsp1_rep	CDS	10010813	10011040	.	+	0	Parent=Os03t0289100-01
Chr03	irgsp1_rep	CDS	10011405	10011518	.	+	0	Parent=Os03t0289100-01
Chr03	irgsp1_rep	three_prime_UTR	10011519	10012024	.	+	.	Parent=Os03t0289100-01
Chr03	irgsp1_rep	mRNA	10006811	10011736	.	+	.	ID=Os03t0289100-02;Name=Os03t0289100-02;Locus_id=Os03g0289100;CGSNL Gene Symbol=OSK3;CGSNL Gene Name=PROTEIN KINASE 3;Oryzabase Gene Symbol Synonym(s)=osk3%2C OsATG1b%2C ATG1B%2C OSK5%2C osk5%2C OSK35%2C SnRK1b%2C OsK35;Oryzabase Gene Name Synonym(s)=protein kinase 3%2C autophagy 1b%2C AUTOPHAGY ASSOCIATED GENE 1B%2C protein kinase 5%2C sucrose non-fermenting-1 related protein kinase 1b;Note=Similar to OSK3.;Transcript_evidence=AK069206 (DDBJ%2C Best hit);ORF_evidence=Q9ZNT4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Kinase-associated KA1 (IPR001772),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (IPR015940),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023008I17;Oryzabase=6184;Expression=AK069206;TENOR=Os03t0289100-02;KEGG=Os03t0289100-02 (EC:2.7.11.11)
Chr03	irgsp1_rep	five_prime_UTR	10006811	10007870	.	+	.	Parent=Os03t0289100-02
Chr03	irgsp1_rep	CDS	10007871	10007994	.	+	0	Parent=Os03t0289100-02
Chr03	irgsp1_rep	CDS	10008082	10008270	.	+	2	Parent=Os03t0289100-02
Chr03	irgsp1_rep	CDS	10008555	10008739	.	+	2	Parent=Os03t0289100-02
Chr03	irgsp1_rep	CDS	10009178	10009360	.	+	0	Parent=Os03t0289100-02
Chr03	irgsp1_rep	CDS	10009458	10009589	.	+	0	Parent=Os03t0289100-02
Chr03	irgsp1_rep	CDS	10009720	10009905	.	+	0	Parent=Os03t0289100-02
Chr03	irgsp1_rep	CDS	10010275	10010364	.	+	0	Parent=Os03t0289100-02
Chr03	irgsp1_rep	CDS	10010434	10010517	.	+	0	Parent=Os03t0289100-02
Chr03	irgsp1_rep	CDS	10010598	10010738	.	+	0	Parent=Os03t0289100-02
Chr03	irgsp1_rep	CDS	10010813	10011040	.	+	0	Parent=Os03t0289100-02
Chr03	irgsp1_rep	CDS	10011414	10011518	.	+	0	Parent=Os03t0289100-02
Chr03	irgsp1_rep	three_prime_UTR	10011519	10011736	.	+	.	Parent=Os03t0289100-02
Chr03	irgsp1_rep	mRNA	10008135	10011536	.	-	.	ID=Os03t0289133-00;Name=Os03t0289133-00;Locus_id=Os03g0289133;Note=Non-protein coding transcript.;Transcript_evidence=BT018428 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0289133-00
Chr03	irgsp1_rep	exon	10011294	10011536	.	-	.	Parent=Os03t0289133-00
Chr03	irgsp1_rep	exon	10010701	10010927	.	-	.	Parent=Os03t0289133-00
Chr03	irgsp1_rep	exon	10010424	10010538	.	-	.	Parent=Os03t0289133-00
Chr03	irgsp1_rep	exon	10009700	10009988	.	-	.	Parent=Os03t0289133-00
Chr03	irgsp1_rep	exon	10009453	10009571	.	-	.	Parent=Os03t0289133-00
Chr03	irgsp1_rep	exon	10009176	10009356	.	-	.	Parent=Os03t0289133-00
Chr03	irgsp1_rep	exon	10008553	10008742	.	-	.	Parent=Os03t0289133-00
Chr03	irgsp1_rep	exon	10008135	10008275	.	-	.	Parent=Os03t0289133-00
Chr03	irgsp1_rep	mRNA	10016501	10019508	.	+	.	ID=Os03t0289200-01;Name=Os03t0289200-01;Locus_id=Os03g0289200;Note=Similar to H/ACA ribonucleoprotein complex subunit 1-like protein (GCR 101 snRNP).;Transcript_evidence=AK064364 (DDBJ%2C Best hit);ORF_evidence=NP_001148647.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Yip1 domain (IPR006977);NIAS_FLcDNA=002-108-C01;Expression=AK064364;TENOR=Os03t0289200-01;KEGG=Os03t0289200-01
Chr03	irgsp1_rep	five_prime_UTR	10016501	10016635	.	+	.	Parent=Os03t0289200-01
Chr03	irgsp1_rep	CDS	10016636	10017406	.	+	0	Parent=Os03t0289200-01
Chr03	irgsp1_rep	three_prime_UTR	10017407	10017419	.	+	.	Parent=Os03t0289200-01
Chr03	irgsp1_rep	three_prime_UTR	10019021	10019508	.	+	.	Parent=Os03t0289200-01
Chr03	irgsp1_rep	mRNA	10016903	10019433	.	+	.	ID=Os03t0289200-02;Name=Os03t0289200-02;Locus_id=Os03g0289200;Note=Similar to protein YIP1.;Transcript_evidence=AK073108 (DDBJ%2C Best hit);ORF_evidence=NP_001148647.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Yip1 domain (IPR006977);NIAS_FLcDNA=J033023N20;Expression=AK073108;TENOR=Os03t0289200-02;KEGG=Os03t0289200-02
Chr03	irgsp1_rep	CDS	10016903	10017406	.	+	0	Parent=Os03t0289200-02
Chr03	irgsp1_rep	three_prime_UTR	10017407	10017419	.	+	.	Parent=Os03t0289200-02
Chr03	irgsp1_rep	three_prime_UTR	10019021	10019433	.	+	.	Parent=Os03t0289200-02
Chr03	irgsp1_rep	mRNA	10024083	10027655	.	+	.	ID=Os03t0289300-00;Name=Os03t0289300-00;Locus_id=Os03g0289300;CGSNL Gene Symbol=PLC2;CGSNL Gene Name=PHOSPHOLIPASE C2;Oryzabase Gene Symbol Synonym(s)=OsPLC2;Oryzabase Gene Name Synonym(s)=phospholipase C2;Note=Similar to Phosphoinositide-specific phospholipase C.;Transcript_evidence=EU953212 (DDBJ);ORF_evidence=Q9FSW1 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: signal transduction (GO:0007165),Biological Process: intracellular signal transduction (GO:0035556),Molecular Function: phosphatidylinositol phospholipase C activity (GO:0004435),Molecular Function: phospholipase C activity (GO:0004629),Molecular Function: protein binding (GO:0005515),Molecular Function: phosphoric diester hydrolase activity (GO:0008081);InterPro=C2 calcium-dependent membrane targeting (IPR000008),Phospholipase C%2C phosphatidylinositol-specific %2C X domain (IPR000909),Phosphoinositide phospholipase C (IPR001192),Phospholipase C%2C phosphatidylinositol-specific%2C Y domain (IPR001711),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),Phospholipase C%2C phosphoinositol-specific%2C EF-hand-like (IPR015359),PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain (IPR017946),C2 membrane targeting protein (IPR018029);Oryzabase=21655;TENOR=Os03t0289300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	10024083	10024538	.	+	0	Parent=Os03t0289300-00
Chr03	irgsp1_rep	CDS	10025404	10025600	.	+	0	Parent=Os03t0289300-00
Chr03	irgsp1_rep	CDS	10025700	10025835	.	+	1	Parent=Os03t0289300-00
Chr03	irgsp1_rep	CDS	10025913	10026164	.	+	0	Parent=Os03t0289300-00
Chr03	irgsp1_rep	CDS	10026253	10026482	.	+	0	Parent=Os03t0289300-00
Chr03	irgsp1_rep	CDS	10026589	10026706	.	+	1	Parent=Os03t0289300-00
Chr03	irgsp1_rep	CDS	10026778	10026930	.	+	0	Parent=Os03t0289300-00
Chr03	irgsp1_rep	CDS	10027020	10027106	.	+	0	Parent=Os03t0289300-00
Chr03	irgsp1_rep	CDS	10027301	10027591	.	+	0	Parent=Os03t0289300-00
Chr03	irgsp1_rep	three_prime_UTR	10027592	10027655	.	+	.	Parent=Os03t0289300-00
Chr03	irgsp1_rep	mRNA	10027296	10027592	.	-	.	ID=Os03t0289350-00;Name=Os03t0289350-00;Locus_id=Os03g0289350;Note=Hypothetical protein.;Transcript_evidence=AK248585 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0289350-00
Chr03	irgsp1_rep	five_prime_UTR	10027592	10027592	.	-	.	Parent=Os03t0289350-00
Chr03	irgsp1_rep	CDS	10027296	10027591	.	-	0	Parent=Os03t0289350-00
Chr03	irgsp1_rep	mRNA	10028091	10029033	.	+	.	ID=Os03t0289400-00;Name=Os03t0289400-00;Locus_id=Os03g0289400;CGSNL Gene Symbol=STR2;CGSNL Gene Name=SULFURTRANSFERASE 2;Oryzabase Gene Symbol Synonym(s)=OsStr2;Oryzabase Gene Name Synonym(s)=Sulfurtransferase 2;Note=Rhodanese-like domain containing protein.;Transcript_evidence=AK355073 (DDBJ);ORF_evidence=NP_001149982.1 (RefSeq);InterPro=Rhodanese-like (IPR001763);Oryzabase=12052;TENOR=Os03t0289400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	10028091	10028104	.	+	.	Parent=Os03t0289400-00
Chr03	irgsp1_rep	CDS	10028105	10028547	.	+	0	Parent=Os03t0289400-00
Chr03	irgsp1_rep	CDS	10028841	10029033	.	+	1	Parent=Os03t0289400-00
Chr03	irgsp1_rep	mRNA	10039387	10044161	.	-	.	ID=Os03t0289800-01;Name=Os03t0289800-01;Locus_id=Os03g0289800;Oryzabase Gene Symbol Synonym(s)=2-ODD8%2C Os2-ODD8%2C 2ODD8%2C Os2ODD8;Oryzabase Gene Name Synonym(s)=leucoanthocyanidin dioxygenase%2C 2-oxoglutarate-dependent dioxygenase 8;Note=Similar to Leucoanthocyanidin dioxygenase-like protein.;Transcript_evidence=AK060599 (DDBJ%2C Best hit),AK069008 (DDBJ%2C Best hit);ORF_evidence=B5M6A0 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Isopenicillin N synthase (IPR002283),Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=001-024-H01,J023003A10;Oryzabase=19836;Expression=AK060599;TENOR=Os03t0289800-01;KEGG=Os03t0289800-01
Chr03	irgsp1_rep	five_prime_UTR	10044048	10044161	.	-	.	Parent=Os03t0289800-01
Chr03	irgsp1_rep	CDS	10043208	10044047	.	-	0	Parent=Os03t0289800-01
Chr03	irgsp1_rep	CDS	10039474	10039797	.	-	0	Parent=Os03t0289800-01
Chr03	irgsp1_rep	three_prime_UTR	10039387	10039473	.	-	.	Parent=Os03t0289800-01
Chr03	irgsp1_rep	mRNA	10043230	10044409	.	+	.	ID=Os03t0289850-01;Name=Os03t0289850-01;Locus_id=Os03g0289850;Note=Hypothetical gene.;Transcript_evidence=AK110790 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-171-C12;Expression=AK110790;TENOR=Os03t0289850-01;KEGG=Os03t0289850-01
Chr03	irgsp1_rep	five_prime_UTR	10043230	10043231	.	+	.	Parent=Os03t0289850-01
Chr03	irgsp1_rep	CDS	10043232	10043483	.	+	0	Parent=Os03t0289850-01
Chr03	irgsp1_rep	three_prime_UTR	10043484	10044409	.	+	.	Parent=Os03t0289850-01
Chr03	irgsp1_rep	mRNA	10080334	10082679	.	-	.	ID=Os03t0290300-01;Name=Os03t0290300-01;Locus_id=Os03g0290300;Oryzabase Gene Symbol Synonym(s)=OsFAD7;Note=Similar to W-3 fatty acid desaturase (Fragment).;Transcript_evidence=AK058242 (DDBJ%2C Best hit);ORF_evidence=Q2HWS9 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629);InterPro=Fatty acid desaturase%2C type 1 (IPR005804);NIAS_FLcDNA=001-011-H04;Oryzabase=11236;Expression=AK058242;TENOR=Os03t0290300-01;KEGG=Os03t0290300-01 (EC:1.14.19.-)
Chr03	irgsp1_rep	CDS	10082603	10082679	.	-	0	Parent=Os03t0290300-01
Chr03	irgsp1_rep	CDS	10082431	10082497	.	-	1	Parent=Os03t0290300-01
Chr03	irgsp1_rep	CDS	10082260	10082352	.	-	0	Parent=Os03t0290300-01
Chr03	irgsp1_rep	CDS	10081973	10082158	.	-	0	Parent=Os03t0290300-01
Chr03	irgsp1_rep	CDS	10081791	10081871	.	-	0	Parent=Os03t0290300-01
Chr03	irgsp1_rep	CDS	10080781	10080918	.	-	0	Parent=Os03t0290300-01
Chr03	irgsp1_rep	CDS	10080502	10080690	.	-	0	Parent=Os03t0290300-01
Chr03	irgsp1_rep	three_prime_UTR	10080334	10080501	.	-	.	Parent=Os03t0290300-01
Chr03	irgsp1_rep	mRNA	10088593	10089259	.	-	.	ID=Os03t0290400-00;Name=Os03t0290400-00;Locus_id=Os03g0290400;Note=Similar to transducin family protein / WD-40 repeat family protein.;Transcript_evidence=EU951265 (DDBJ);ORF_evidence=NP_196176.1 (RefSeq);GO=Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: integral to membrane (GO:0016021);InterPro=Synaptobrevin (IPR001388);TENOR=Os03t0290400-00
Chr03	irgsp1_rep	CDS	10088960	10089259	.	-	0	Parent=Os03t0290400-00
Chr03	irgsp1_rep	CDS	10088803	10088865	.	-	0	Parent=Os03t0290400-00
Chr03	irgsp1_rep	CDS	10088593	10088700	.	-	0	Parent=Os03t0290400-00
Chr03	irgsp1_rep	mRNA	10090151	10097850	.	-	.	ID=Os03t0290500-01;Name=Os03t0290500-01;Locus_id=Os03g0290500;Note=Synaptojanin%2C N-terminal domain containing protein.;Transcript_evidence=AK100127 (DDBJ%2C Best hit);ORF_evidence=NP_190751.2 (RefSeq);GO=Molecular Function: phosphoric ester hydrolase activity (GO:0042578);InterPro=Synaptojanin%2C N-terminal (IPR002013);NIAS_FLcDNA=J023008J23;Expression=AK100127;TENOR=Os03t0290500-01;KEGG=Os03t0290500-01
Chr03	irgsp1_rep	five_prime_UTR	10097745	10097850	.	-	.	Parent=Os03t0290500-01
Chr03	irgsp1_rep	CDS	10097564	10097744	.	-	0	Parent=Os03t0290500-01
Chr03	irgsp1_rep	CDS	10097315	10097389	.	-	2	Parent=Os03t0290500-01
Chr03	irgsp1_rep	CDS	10096327	10096454	.	-	2	Parent=Os03t0290500-01
Chr03	irgsp1_rep	CDS	10096118	10096209	.	-	0	Parent=Os03t0290500-01
Chr03	irgsp1_rep	CDS	10095943	10096000	.	-	1	Parent=Os03t0290500-01
Chr03	irgsp1_rep	CDS	10094939	10094995	.	-	0	Parent=Os03t0290500-01
Chr03	irgsp1_rep	CDS	10094816	10094849	.	-	0	Parent=Os03t0290500-01
Chr03	irgsp1_rep	CDS	10094477	10094557	.	-	2	Parent=Os03t0290500-01
Chr03	irgsp1_rep	CDS	10094254	10094360	.	-	2	Parent=Os03t0290500-01
Chr03	irgsp1_rep	CDS	10093681	10093767	.	-	0	Parent=Os03t0290500-01
Chr03	irgsp1_rep	CDS	10093511	10093588	.	-	0	Parent=Os03t0290500-01
Chr03	irgsp1_rep	CDS	10092863	10092927	.	-	0	Parent=Os03t0290500-01
Chr03	irgsp1_rep	CDS	10092623	10092721	.	-	1	Parent=Os03t0290500-01
Chr03	irgsp1_rep	CDS	10092379	10092478	.	-	1	Parent=Os03t0290500-01
Chr03	irgsp1_rep	CDS	10091698	10091806	.	-	0	Parent=Os03t0290500-01
Chr03	irgsp1_rep	CDS	10091557	10091629	.	-	2	Parent=Os03t0290500-01
Chr03	irgsp1_rep	CDS	10091368	10091461	.	-	1	Parent=Os03t0290500-01
Chr03	irgsp1_rep	CDS	10090908	10090994	.	-	0	Parent=Os03t0290500-01
Chr03	irgsp1_rep	CDS	10090755	10090821	.	-	0	Parent=Os03t0290500-01
Chr03	irgsp1_rep	CDS	10090540	10090667	.	-	2	Parent=Os03t0290500-01
Chr03	irgsp1_rep	three_prime_UTR	10090151	10090539	.	-	.	Parent=Os03t0290500-01
Chr03	irgsp1_rep	mRNA	10105989	10107964	.	+	.	ID=Os03t0290900-01;Name=Os03t0290900-01;Locus_id=Os03g0290900;Oryzabase Gene Symbol Synonym(s)=OsTBL18%2C TBL18;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 18;Note=Protein of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=AK063646 (DDBJ%2C Best hit);ORF_evidence=E4MYC2 (UniProt);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=001-118-H07;Oryzabase=21473;Expression=AK063646;TENOR=Os03t0290900-01;KEGG=Os03t0290900-01
Chr03	irgsp1_rep	five_prime_UTR	10105989	10105998	.	+	.	Parent=Os03t0290900-01
Chr03	irgsp1_rep	CDS	10105999	10106324	.	+	0	Parent=Os03t0290900-01
Chr03	irgsp1_rep	CDS	10106390	10106561	.	+	1	Parent=Os03t0290900-01
Chr03	irgsp1_rep	CDS	10106669	10106847	.	+	0	Parent=Os03t0290900-01
Chr03	irgsp1_rep	CDS	10107022	10107180	.	+	1	Parent=Os03t0290900-01
Chr03	irgsp1_rep	CDS	10107412	10107757	.	+	1	Parent=Os03t0290900-01
Chr03	irgsp1_rep	three_prime_UTR	10107758	10107964	.	+	.	Parent=Os03t0290900-01
Chr03	irgsp1_rep	mRNA	10116219	10120372	.	+	.	ID=Os03t0291200-01;Name=Os03t0291200-01;Locus_id=Os03g0291200;CGSNL Gene Symbol=XOAT8;CGSNL Gene Name=XYLAN O-ACETYLTRANSFERASE 8;Oryzabase Gene Symbol Synonym(s)=OsTBL8%2C TBL8%2C OsXOAT8;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 8%2C xylan O-acetyltransferase 8;Note=Protein of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=AK110898 (DDBJ%2C Best hit);ORF_evidence=B8ALL7 (UniProt);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=002-173-A08;Oryzabase=21463;Expression=AK110898;TENOR=Os03t0291200-01;KEGG=Os03t0291200-01
Chr03	irgsp1_rep	five_prime_UTR	10116219	10116275	.	+	.	Parent=Os03t0291200-01
Chr03	irgsp1_rep	CDS	10116276	10116399	.	+	0	Parent=Os03t0291200-01
Chr03	irgsp1_rep	CDS	10116569	10116908	.	+	2	Parent=Os03t0291200-01
Chr03	irgsp1_rep	CDS	10119048	10119225	.	+	1	Parent=Os03t0291200-01
Chr03	irgsp1_rep	CDS	10119319	10119518	.	+	0	Parent=Os03t0291200-01
Chr03	irgsp1_rep	CDS	10119616	10119766	.	+	1	Parent=Os03t0291200-01
Chr03	irgsp1_rep	CDS	10119856	10120191	.	+	0	Parent=Os03t0291200-01
Chr03	irgsp1_rep	three_prime_UTR	10120192	10120372	.	+	.	Parent=Os03t0291200-01
Chr03	irgsp1_rep	mRNA	10120289	10124384	.	-	.	ID=Os03t0291500-01;Name=Os03t0291500-01;Locus_id=Os03g0291500;RAP-DB Gene Symbol Synonym(s)=ASN1%2C OsASN1%2C OsAS1%2C AS1;RAP-DB Gene Name Synonym(s)=ASPARAGINE SYNTHETASE 1%2C asparagine synthetase 1%2C Asparagine Synthetase1;CGSNL Gene Symbol=ASN1;CGSNL Gene Name=ASPARAGINE SYNTHETASE 1;Oryzabase Gene Symbol Synonym(s)=OsASN1%2C OsAS1%2C AS1;Oryzabase Gene Name Synonym(s)=asparagine synthetase 1%2C Asparagine Synthetase1;Note=Asparagine synthetase%2C Biosynthesis of asparagine following the supply of ammonium;Transcript_evidence=AK318591;ORF_evidence=Q10MX3;GO=Biological Process: asparagine biosynthetic process (GO:0006529),Molecular Function: asparagine synthase (glutamine-hydrolyzing) activity (GO:0004066);InterPro=Asparagine synthase%2C glutamine-hydrolyzing (IPR006426),Nucleophile aminohydrolases%2C N-terminal (IPR029055),Glutamine amidotransferase type 2 domain (IPR017932),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Asparagine synthase (IPR001962);NIAS_FLcDNA=J100049M10;Manual Curation=September 4%2C 2015;Literature_PMID=25634963;Oryzabase=9306;TENOR=Os03t0291500-01;KEGG=Os03t0291500-01 (EC:6.3.5.4)
Chr03	irgsp1_rep	five_prime_UTR	10124287	10124384	.	-	.	Parent=Os03t0291500-01
Chr03	irgsp1_rep	CDS	10124205	10124286	.	-	0	Parent=Os03t0291500-01
Chr03	irgsp1_rep	CDS	10123562	10123698	.	-	2	Parent=Os03t0291500-01
Chr03	irgsp1_rep	CDS	10123343	10123441	.	-	0	Parent=Os03t0291500-01
Chr03	irgsp1_rep	CDS	10123084	10123225	.	-	0	Parent=Os03t0291500-01
Chr03	irgsp1_rep	CDS	10122745	10122935	.	-	2	Parent=Os03t0291500-01
Chr03	irgsp1_rep	CDS	10122459	10122620	.	-	0	Parent=Os03t0291500-01
Chr03	irgsp1_rep	CDS	10122271	10122351	.	-	0	Parent=Os03t0291500-01
Chr03	irgsp1_rep	CDS	10121813	10122034	.	-	0	Parent=Os03t0291500-01
Chr03	irgsp1_rep	CDS	10121563	10121697	.	-	0	Parent=Os03t0291500-01
Chr03	irgsp1_rep	CDS	10121382	10121462	.	-	0	Parent=Os03t0291500-01
Chr03	irgsp1_rep	CDS	10121208	10121294	.	-	0	Parent=Os03t0291500-01
Chr03	irgsp1_rep	CDS	10121015	10121122	.	-	0	Parent=Os03t0291500-01
Chr03	irgsp1_rep	CDS	10120614	10120901	.	-	0	Parent=Os03t0291500-01
Chr03	irgsp1_rep	three_prime_UTR	10120289	10120613	.	-	.	Parent=Os03t0291500-01
Chr03	irgsp1_rep	mRNA	10147990	10149460	.	-	.	ID=Os03t0291700-01;Name=Os03t0291700-01;Locus_id=Os03g0291700;Note=Hypothetical protein.;Transcript_evidence=AK107416 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-127-F02;Expression=AK107416;TENOR=Os03t0291700-01;KEGG=Os03t0291700-01
Chr03	irgsp1_rep	five_prime_UTR	10149385	10149460	.	-	.	Parent=Os03t0291700-01
Chr03	irgsp1_rep	CDS	10148833	10149384	.	-	0	Parent=Os03t0291700-01
Chr03	irgsp1_rep	three_prime_UTR	10147990	10148832	.	-	.	Parent=Os03t0291700-01
Chr03	irgsp1_rep	mRNA	10148550	10153087	.	+	.	ID=Os03t0291800-01;Name=Os03t0291800-01;Locus_id=Os03g0291800;CGSNL Gene Symbol=XOAT6;CGSNL Gene Name=XYLAN O-ACETYLTRANSFERASE 6;Oryzabase Gene Symbol Synonym(s)=OsTBL15%2C TBL15%2C OsXOAT6;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 15%2C xylan O-acetyltransferase 6;Note=Similar to ESK1 (ESKIMO 1).;Transcript_evidence=AK099139 (DDBJ%2C Best hit),AK070365 (DDBJ%2C Best hit);ORF_evidence=NP_191158.1 (RefSeq);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=J023050B10,J023050A10;Oryzabase=21470;TENOR=Os03t0291800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	10148550	10148683	.	+	.	Parent=Os03t0291800-01
Chr03	irgsp1_rep	CDS	10148684	10149453	.	+	0	Parent=Os03t0291800-01
Chr03	irgsp1_rep	CDS	10150146	10150326	.	+	1	Parent=Os03t0291800-01
Chr03	irgsp1_rep	CDS	10150420	10150619	.	+	0	Parent=Os03t0291800-01
Chr03	irgsp1_rep	CDS	10150728	10150886	.	+	1	Parent=Os03t0291800-01
Chr03	irgsp1_rep	CDS	10152269	10152635	.	+	1	Parent=Os03t0291800-01
Chr03	irgsp1_rep	three_prime_UTR	10152636	10153087	.	+	.	Parent=Os03t0291800-01
Chr03	irgsp1_rep	mRNA	10149057	10153078	.	+	.	ID=Os03t0291800-02;Name=Os03t0291800-02;Locus_id=Os03g0291800;CGSNL Gene Symbol=XOAT6;CGSNL Gene Name=XYLAN O-ACETYLTRANSFERASE 6;Oryzabase Gene Symbol Synonym(s)=OsTBL15%2C TBL15%2C OsXOAT6;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 15%2C xylan O-acetyltransferase 6;Note=Similar to predicted protein.;Transcript_evidence=AK064880 (DDBJ%2C Best hit);ORF_evidence=NP_191158.1 (RefSeq);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=J013000J23;Oryzabase=21470;Expression=AK064880;TENOR=Os03t0291800-02;KEGG=Os03t0291800-02
Chr03	irgsp1_rep	five_prime_UTR	10149057	10149058	.	+	.	Parent=Os03t0291800-02
Chr03	irgsp1_rep	CDS	10149059	10149453	.	+	0	Parent=Os03t0291800-02
Chr03	irgsp1_rep	CDS	10150146	10150326	.	+	1	Parent=Os03t0291800-02
Chr03	irgsp1_rep	CDS	10150420	10150619	.	+	0	Parent=Os03t0291800-02
Chr03	irgsp1_rep	CDS	10150728	10150886	.	+	1	Parent=Os03t0291800-02
Chr03	irgsp1_rep	CDS	10152269	10152635	.	+	1	Parent=Os03t0291800-02
Chr03	irgsp1_rep	three_prime_UTR	10152636	10153078	.	+	.	Parent=Os03t0291800-02
Chr03	irgsp1_rep	mRNA	10150420	10153087	.	+	.	ID=Os03t0291800-03;Name=Os03t0291800-03;Locus_id=Os03g0291800;CGSNL Gene Symbol=XOAT6;CGSNL Gene Name=XYLAN O-ACETYLTRANSFERASE 6;Oryzabase Gene Symbol Synonym(s)=OsTBL15%2C TBL15%2C OsXOAT6;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 15%2C xylan O-acetyltransferase 6;Note=Similar to ESK1 (ESKIMO 1).;Transcript_evidence=AK060829 (DDBJ%2C Best hit);ORF_evidence=NP_191158.1 (RefSeq);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=001-034-C02;Oryzabase=21470;TENOR=Os03t0291800-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	10150420	10150608	.	+	.	Parent=Os03t0291800-03
Chr03	irgsp1_rep	CDS	10150609	10150619	.	+	0	Parent=Os03t0291800-03
Chr03	irgsp1_rep	CDS	10150728	10150886	.	+	1	Parent=Os03t0291800-03
Chr03	irgsp1_rep	CDS	10152269	10152635	.	+	1	Parent=Os03t0291800-03
Chr03	irgsp1_rep	three_prime_UTR	10152636	10153087	.	+	.	Parent=Os03t0291800-03
Chr03	irgsp1_rep	mRNA	10163441	10165442	.	+	.	ID=Os03t0292100-01;Name=Os03t0292100-01;Locus_id=Os03g0292100;Oryzabase Gene Symbol Synonym(s)=OsPP2C32%2C PP2C32%2C OsPP50;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C32%2C protein phosphatase 2C 32%2C protein phosphatase 50;Note=Hypothetical conserved gene.;Transcript_evidence=AK287695 (DDBJ%2C Best hit);ORF_evidence=A3F4K2 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J065129B08;Oryzabase=17907;TENOR=Os03t0292100-01;KEGG=Os03t0292100-01 (EC:3.1.3.16)
Chr03	irgsp1_rep	five_prime_UTR	10163441	10163551	.	+	.	Parent=Os03t0292100-01
Chr03	irgsp1_rep	CDS	10163552	10164034	.	+	0	Parent=Os03t0292100-01
Chr03	irgsp1_rep	CDS	10164174	10164521	.	+	0	Parent=Os03t0292100-01
Chr03	irgsp1_rep	CDS	10164681	10165025	.	+	0	Parent=Os03t0292100-01
Chr03	irgsp1_rep	three_prime_UTR	10165026	10165442	.	+	.	Parent=Os03t0292100-01
Chr03	irgsp1_rep	mRNA	10171907	10174512	.	+	.	ID=Os03t0292200-01;Name=Os03t0292200-01;Locus_id=Os03g0292200;Note=Adenine nucleotide translocator 1 domain containing protein.;Transcript_evidence=AK069872 (DDBJ%2C Best hit);ORF_evidence=Q10MX0 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial inner membrane (GO:0005743),Molecular Function: binding (GO:0005488);InterPro=Mitochondrial carrier protein (IPR002067),Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J023037M23;Expression=AK069872;TENOR=Os03t0292200-01;KEGG=Os03t0292200-01
Chr03	irgsp1_rep	five_prime_UTR	10171907	10171928	.	+	.	Parent=Os03t0292200-01
Chr03	irgsp1_rep	CDS	10171929	10172346	.	+	0	Parent=Os03t0292200-01
Chr03	irgsp1_rep	CDS	10173633	10174168	.	+	2	Parent=Os03t0292200-01
Chr03	irgsp1_rep	three_prime_UTR	10174169	10174512	.	+	.	Parent=Os03t0292200-01
Chr03	irgsp1_rep	mRNA	10184619	10185409	.	-	.	ID=Os03t0292600-00;Name=Os03t0292600-00;Locus_id=Os03g0292600;Note=Hypothetical protein.;Transcript_evidence=tplb0040o12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0292600-00
Chr03	irgsp1_rep	five_prime_UTR	10185241	10185409	.	-	.	Parent=Os03t0292600-00
Chr03	irgsp1_rep	CDS	10184764	10185240	.	-	0	Parent=Os03t0292600-00
Chr03	irgsp1_rep	three_prime_UTR	10184619	10184763	.	-	.	Parent=Os03t0292600-00
Chr03	irgsp1_rep	mRNA	10184421	10185914	.	+	.	ID=Os03t0292700-01;Name=Os03t0292700-01;Locus_id=Os03g0292700;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=AK108043 (DDBJ%2C Best hit);ORF_evidence=Q10MW9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=002-137-D11;TENOR=Os03t0292700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	10184421	10184581	.	+	.	Parent=Os03t0292700-01
Chr03	irgsp1_rep	CDS	10184582	10185914	.	+	0	Parent=Os03t0292700-01
Chr03	irgsp1_rep	mRNA	10187429	10190243	.	-	.	ID=Os03t0292800-01;Name=Os03t0292800-01;Locus_id=Os03g0292800;Oryzabase Gene Name Synonym(s)=ranbp1 domain containing protein;Note=Similar to Ran binding protein 1 homolog.;Transcript_evidence=AK069970 (DDBJ%2C Best hit);ORF_evidence=NP_001148904.1 (RefSeq);GO=Biological Process: intracellular transport (GO:0046907),Molecular Function: protein binding (GO:0005515);InterPro=Ran binding protein 1 (IPR000156),Pleckstrin homology-type (IPR011993);NIAS_FLcDNA=J023039I06;Oryzabase=16796;Expression=AK069970;TENOR=Os03t0292800-01;KEGG=Os03t0292800-01
Chr03	irgsp1_rep	five_prime_UTR	10190161	10190243	.	-	.	Parent=Os03t0292800-01
Chr03	irgsp1_rep	CDS	10190003	10190160	.	-	0	Parent=Os03t0292800-01
Chr03	irgsp1_rep	CDS	10189756	10189907	.	-	1	Parent=Os03t0292800-01
Chr03	irgsp1_rep	CDS	10189535	10189660	.	-	2	Parent=Os03t0292800-01
Chr03	irgsp1_rep	CDS	10187825	10188018	.	-	2	Parent=Os03t0292800-01
Chr03	irgsp1_rep	three_prime_UTR	10187429	10187824	.	-	.	Parent=Os03t0292800-01
Chr03	irgsp1_rep	mRNA	10191730	10202345	.	-	.	ID=Os03t0292900-01;Name=Os03t0292900-01;Locus_id=Os03g0292900;Note=Similar to Importin-beta N-terminal domain containing protein.;Transcript_evidence=AK101057 (DDBJ%2C Best hit);ORF_evidence=Q10MW7 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Molecular Function: binding (GO:0005488),Molecular Function: protein transporter activity (GO:0008565);InterPro=Importin-beta%2C N-terminal (IPR001494),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033021C05;TENOR=Os03t0292900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	10202142	10202345	.	-	.	Parent=Os03t0292900-01
Chr03	irgsp1_rep	CDS	10202001	10202141	.	-	0	Parent=Os03t0292900-01
Chr03	irgsp1_rep	CDS	10201790	10201899	.	-	0	Parent=Os03t0292900-01
Chr03	irgsp1_rep	CDS	10200879	10200951	.	-	1	Parent=Os03t0292900-01
Chr03	irgsp1_rep	CDS	10200723	10200784	.	-	0	Parent=Os03t0292900-01
Chr03	irgsp1_rep	CDS	10200484	10200625	.	-	1	Parent=Os03t0292900-01
Chr03	irgsp1_rep	CDS	10199867	10200076	.	-	0	Parent=Os03t0292900-01
Chr03	irgsp1_rep	CDS	10199708	10199774	.	-	0	Parent=Os03t0292900-01
Chr03	irgsp1_rep	CDS	10198932	10199025	.	-	2	Parent=Os03t0292900-01
Chr03	irgsp1_rep	CDS	10198801	10198849	.	-	1	Parent=Os03t0292900-01
Chr03	irgsp1_rep	three_prime_UTR	10198620	10198800	.	-	.	Parent=Os03t0292900-01
Chr03	irgsp1_rep	three_prime_UTR	10197835	10197982	.	-	.	Parent=Os03t0292900-01
Chr03	irgsp1_rep	three_prime_UTR	10197102	10197756	.	-	.	Parent=Os03t0292900-01
Chr03	irgsp1_rep	three_prime_UTR	10196884	10197018	.	-	.	Parent=Os03t0292900-01
Chr03	irgsp1_rep	three_prime_UTR	10195539	10195634	.	-	.	Parent=Os03t0292900-01
Chr03	irgsp1_rep	three_prime_UTR	10194816	10194998	.	-	.	Parent=Os03t0292900-01
Chr03	irgsp1_rep	three_prime_UTR	10194628	10194732	.	-	.	Parent=Os03t0292900-01
Chr03	irgsp1_rep	three_prime_UTR	10194014	10194172	.	-	.	Parent=Os03t0292900-01
Chr03	irgsp1_rep	three_prime_UTR	10193604	10193648	.	-	.	Parent=Os03t0292900-01
Chr03	irgsp1_rep	three_prime_UTR	10193279	10193494	.	-	.	Parent=Os03t0292900-01
Chr03	irgsp1_rep	three_prime_UTR	10192655	10192761	.	-	.	Parent=Os03t0292900-01
Chr03	irgsp1_rep	three_prime_UTR	10192528	10192584	.	-	.	Parent=Os03t0292900-01
Chr03	irgsp1_rep	three_prime_UTR	10192369	10192447	.	-	.	Parent=Os03t0292900-01
Chr03	irgsp1_rep	three_prime_UTR	10191730	10192280	.	-	.	Parent=Os03t0292900-01
Chr03	irgsp1_rep	mRNA	10206161	10208503	.	+	.	ID=Os03t0293000-01;Name=Os03t0293000-01;Locus_id=Os03g0293000;Oryzabase Gene Symbol Synonym(s)=OsERdj3A%2C TMS1;Oryzabase Gene Name Synonym(s)=ER-resident J-protein 3A%2C THERMOSENSITIVE MALE STERILE 1;Note=Similar to DnaJ domain containing protein%2C expressed.;Transcript_evidence=AK063376 (DDBJ%2C Best hit);ORF_evidence=Q10MW6 (UniProt);InterPro=Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=001-114-F03;Oryzabase=15031;TENOR=Os03t0293000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	10206161	10206667	.	+	0	Parent=Os03t0293000-01
Chr03	irgsp1_rep	CDS	10206759	10207100	.	+	0	Parent=Os03t0293000-01
Chr03	irgsp1_rep	CDS	10207434	10207793	.	+	0	Parent=Os03t0293000-01
Chr03	irgsp1_rep	CDS	10207896	10208177	.	+	0	Parent=Os03t0293000-01
Chr03	irgsp1_rep	three_prime_UTR	10208178	10208503	.	+	.	Parent=Os03t0293000-01
Chr03	irgsp1_rep	mRNA	10208963	10210224	.	+	.	ID=Os03t0293100-01;Name=Os03t0293100-01;Locus_id=Os03g0293100;Note=Conserved hypothetical protein.;Transcript_evidence=AK060680 (DDBJ%2C Best hit);ORF_evidence=B8ALM4 (UniProt);NIAS_FLcDNA=001-029-C12;Expression=AK060680;TENOR=Os03t0293100-01;KEGG=Os03t0293100-01
Chr03	irgsp1_rep	five_prime_UTR	10208963	10209032	.	+	.	Parent=Os03t0293100-01
Chr03	irgsp1_rep	CDS	10209033	10209083	.	+	0	Parent=Os03t0293100-01
Chr03	irgsp1_rep	CDS	10209383	10210066	.	+	0	Parent=Os03t0293100-01
Chr03	irgsp1_rep	three_prime_UTR	10210067	10210224	.	+	.	Parent=Os03t0293100-01
Chr03	irgsp1_rep	mRNA	10214020	10215765	.	+	.	ID=Os03t0293400-01;Name=Os03t0293400-01;Locus_id=Os03g0293400;Note=Similar to basic helix-loop-helix family protein.;Transcript_evidence=AK058372 (DDBJ%2C Best hit);ORF_evidence=XP_002873016.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Appr-1-p processing (IPR002589),Histidine triad-like motif (IPR011146),Histidine triad motif (IPR011151),Histidine triad%2C conserved site (IPR019808);NIAS_FLcDNA=001-014-G07;TENOR=Os03t0293400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	10214020	10214081	.	+	0	Parent=Os03t0293400-01
Chr03	irgsp1_rep	CDS	10214264	10214888	.	+	1	Parent=Os03t0293400-01
Chr03	irgsp1_rep	CDS	10214976	10215146	.	+	0	Parent=Os03t0293400-01
Chr03	irgsp1_rep	CDS	10215239	10215574	.	+	0	Parent=Os03t0293400-01
Chr03	irgsp1_rep	three_prime_UTR	10215575	10215765	.	+	.	Parent=Os03t0293400-01
Chr03	irgsp1_rep	mRNA	10217797	10220579	.	+	.	ID=Os03t0293450-00;Name=Os03t0293450-00;Locus_id=Os03g0293450;Note=Hypothetical protein.;Transcript_evidence=tplb0035b22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0293450-00
Chr03	irgsp1_rep	five_prime_UTR	10217797	10218086	.	+	.	Parent=Os03t0293450-00
Chr03	irgsp1_rep	CDS	10218087	10218166	.	+	0	Parent=Os03t0293450-00
Chr03	irgsp1_rep	CDS	10218275	10218437	.	+	1	Parent=Os03t0293450-00
Chr03	irgsp1_rep	three_prime_UTR	10218438	10218445	.	+	.	Parent=Os03t0293450-00
Chr03	irgsp1_rep	three_prime_UTR	10218530	10218662	.	+	.	Parent=Os03t0293450-00
Chr03	irgsp1_rep	three_prime_UTR	10218753	10219395	.	+	.	Parent=Os03t0293450-00
Chr03	irgsp1_rep	three_prime_UTR	10219776	10220579	.	+	.	Parent=Os03t0293450-00
Chr03	irgsp1_rep	mRNA	10218937	10220748	.	-	.	ID=Os03t0293500-01;Name=Os03t0293500-01;Locus_id=Os03g0293500;CGSNL Gene Symbol=PDC2;CGSNL Gene Name=PYRUVATE DECARBOXYLASE 2;Oryzabase Gene Symbol Synonym(s)=pdc2*%2C pdc2;Oryzabase Gene Name Synonym(s)=pyruvate decarboxylase-2%2C Pyruvate decarboxylase isozyme 2;Note=Similar to Pyruvate decarboxylase isozyme 2.;Transcript_evidence=AK119500 (DDBJ%2C Best hit);ORF_evidence=B7ERZ5 (UniProt);GO=Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: carboxy-lyase activity (GO:0016831),Molecular Function: thiamine pyrophosphate binding (GO:0030976);InterPro=Thiamine pyrophosphate enzyme%2C central domain (IPR012000),Thiamine pyrophosphate enzyme%2C N-terminal TPP-binding domain (IPR012001),Pyruvate decarboxylase/indolepyruvate decarboxylase (IPR012110);NIAS_FLcDNA=001-134-E07;Oryzabase=2055;Expression=AK119500;TENOR=Os03t0293500-01;KEGG=Os03t0293500-01 (EC:4.1.1.1)
Chr03	irgsp1_rep	five_prime_UTR	10220579	10220748	.	-	.	Parent=Os03t0293500-01
Chr03	irgsp1_rep	CDS	10220051	10220578	.	-	0	Parent=Os03t0293500-01
Chr03	irgsp1_rep	CDS	10219784	10219947	.	-	0	Parent=Os03t0293500-01
Chr03	irgsp1_rep	CDS	10218937	10219405	.	-	1	Parent=Os03t0293500-01
Chr03	irgsp1_rep	mRNA	10217810	10220738	.	-	.	ID=Os03t0293500-02;Name=Os03t0293500-02;Locus_id=Os03g0293500;CGSNL Gene Symbol=PDC2;CGSNL Gene Name=PYRUVATE DECARBOXYLASE 2;Oryzabase Gene Symbol Synonym(s)=pdc2*%2C pdc2;Oryzabase Gene Name Synonym(s)=pyruvate decarboxylase-2%2C Pyruvate decarboxylase isozyme 2;Note=Similar to Pyruvate decarboxylase isozyme 3 (EC 4.1.1.1) (PDC) (Fragment).;Transcript_evidence=AK101594 (DDBJ%2C Best hit);ORF_evidence=Q10MW3 (UniProt);GO=Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: carboxy-lyase activity (GO:0016831),Molecular Function: thiamine pyrophosphate binding (GO:0030976);InterPro=Thiamine pyrophosphate enzyme%2C C-terminal TPP-binding (IPR011766),Thiamine pyrophosphate enzyme%2C central domain (IPR012000),Thiamine pyrophosphate enzyme%2C N-terminal TPP-binding domain (IPR012001),Pyruvate decarboxylase/indolepyruvate decarboxylase (IPR012110);NIAS_FLcDNA=J033051F01;Oryzabase=2055;Expression=AK101594;TENOR=Os03t0293500-02;KEGG=Os03t0293500-02 (EC:4.1.1.1)
Chr03	irgsp1_rep	five_prime_UTR	10220579	10220738	.	-	.	Parent=Os03t0293500-02
Chr03	irgsp1_rep	CDS	10220051	10220578	.	-	0	Parent=Os03t0293500-02
Chr03	irgsp1_rep	CDS	10219784	10219947	.	-	0	Parent=Os03t0293500-02
Chr03	irgsp1_rep	CDS	10218755	10219405	.	-	1	Parent=Os03t0293500-02
Chr03	irgsp1_rep	CDS	10218547	10218664	.	-	1	Parent=Os03t0293500-02
Chr03	irgsp1_rep	CDS	10218267	10218455	.	-	0	Parent=Os03t0293500-02
Chr03	irgsp1_rep	CDS	10217990	10218157	.	-	0	Parent=Os03t0293500-02
Chr03	irgsp1_rep	three_prime_UTR	10217810	10217989	.	-	.	Parent=Os03t0293500-02
Chr03	irgsp1_rep	mRNA	10224027	10225034	.	+	.	ID=Os03t0293600-01;Name=Os03t0293600-01;Locus_id=Os03g0293600;Note=Hypothetical protein.;Transcript_evidence=AK109072 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-154-G04;Expression=AK109072;TENOR=Os03t0293600-01;KEGG=Os03t0293600-01
Chr03	irgsp1_rep	five_prime_UTR	10224027	10224447	.	+	.	Parent=Os03t0293600-01
Chr03	irgsp1_rep	CDS	10224448	10224957	.	+	0	Parent=Os03t0293600-01
Chr03	irgsp1_rep	three_prime_UTR	10224958	10225034	.	+	.	Parent=Os03t0293600-01
Chr03	irgsp1_rep	mRNA	10230815	10231357	.	-	.	ID=Os03t0293700-00;Name=Os03t0293700-00;Locus_id=Os03g0293700;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10MW1 (UniProt);TENOR=Os03t0293700-00;KEGG=Os03t0293700-00
Chr03	irgsp1_rep	CDS	10230815	10231357	.	-	0	Parent=Os03t0293700-00
Chr03	irgsp1_rep	mRNA	10235548	10240440	.	-	.	ID=Os03t0293850-01;Name=Os03t0293850-01;Locus_id=Os03g0293850;Note=Similar to Ribosomal protein S15 containing protein.;Transcript_evidence=AK064853 (DDBJ%2C Best hit);ORF_evidence=B6TK08 (UniProt);NIAS_FLcDNA=J013000H06;TENOR=Os03t0293850-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	10240303	10240440	.	-	.	Parent=Os03t0293850-01
Chr03	irgsp1_rep	five_prime_UTR	10239937	10240071	.	-	.	Parent=Os03t0293850-01
Chr03	irgsp1_rep	CDS	10239889	10239936	.	-	0	Parent=Os03t0293850-01
Chr03	irgsp1_rep	CDS	10239614	10239699	.	-	0	Parent=Os03t0293850-01
Chr03	irgsp1_rep	CDS	10239481	10239526	.	-	1	Parent=Os03t0293850-01
Chr03	irgsp1_rep	three_prime_UTR	10237268	10239480	.	-	.	Parent=Os03t0293850-01
Chr03	irgsp1_rep	three_prime_UTR	10236980	10237133	.	-	.	Parent=Os03t0293850-01
Chr03	irgsp1_rep	three_prime_UTR	10235548	10236879	.	-	.	Parent=Os03t0293850-01
Chr03	irgsp1_rep	mRNA	10241251	10246038	.	-	.	ID=Os03t0293900-01;Name=Os03t0293900-01;Locus_id=Os03g0293900;Oryzabase Gene Name Synonym(s)=Rubisco subunit-binding protein;Note=Similar to Rubisco large subunit-binding protein subunit alpha (Fragment).;Transcript_evidence=AK072637 (DDBJ%2C Best hit);ORF_evidence=A6MZX7 (UniProt);NIAS_FLcDNA=J023131F23;Oryzabase=12451;TENOR=Os03t0293900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	10245859	10246038	.	-	.	Parent=Os03t0293900-01
Chr03	irgsp1_rep	five_prime_UTR	10245257	10245799	.	-	.	Parent=Os03t0293900-01
Chr03	irgsp1_rep	five_prime_UTR	10244641	10244685	.	-	.	Parent=Os03t0293900-01
Chr03	irgsp1_rep	five_prime_UTR	10244510	10244544	.	-	.	Parent=Os03t0293900-01
Chr03	irgsp1_rep	CDS	10244452	10244509	.	-	0	Parent=Os03t0293900-01
Chr03	irgsp1_rep	CDS	10243451	10243518	.	-	2	Parent=Os03t0293900-01
Chr03	irgsp1_rep	CDS	10242274	10242381	.	-	0	Parent=Os03t0293900-01
Chr03	irgsp1_rep	three_prime_UTR	10242089	10242273	.	-	.	Parent=Os03t0293900-01
Chr03	irgsp1_rep	three_prime_UTR	10241251	10241581	.	-	.	Parent=Os03t0293900-01
Chr03	irgsp1_rep	mRNA	10244601	10245815	.	+	.	ID=Os03t0294001-01;Name=Os03t0294001-01;Locus_id=Os03g0294001;Note=Non-protein coding transcript.;Transcript_evidence=AK288505 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090041I18;TENOR=Os03t0294001-01
Chr03	irgsp1_rep	exon	10244601	10245815	.	+	.	Parent=Os03t0294001-01
Chr03	irgsp1_rep	mRNA	10252143	10258334	.	-	.	ID=Os03t0294032-01;Name=Os03t0294032-01;Locus_id=Os03g0294032;Note=Hypothetical gene.;Transcript_evidence=AK242678 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090032F21;TENOR=Os03t0294032-01;KEGG=Os03t0294032-01
Chr03	irgsp1_rep	five_prime_UTR	10258267	10258334	.	-	.	Parent=Os03t0294032-01
Chr03	irgsp1_rep	five_prime_UTR	10255624	10256782	.	-	.	Parent=Os03t0294032-01
Chr03	irgsp1_rep	five_prime_UTR	10255395	10255488	.	-	.	Parent=Os03t0294032-01
Chr03	irgsp1_rep	five_prime_UTR	10253920	10254061	.	-	.	Parent=Os03t0294032-01
Chr03	irgsp1_rep	CDS	10253849	10253919	.	-	0	Parent=Os03t0294032-01
Chr03	irgsp1_rep	CDS	10253414	10253765	.	-	1	Parent=Os03t0294032-01
Chr03	irgsp1_rep	CDS	10252667	10252708	.	-	0	Parent=Os03t0294032-01
Chr03	irgsp1_rep	three_prime_UTR	10252143	10252666	.	-	.	Parent=Os03t0294032-01
Chr03	irgsp1_rep	mRNA	10255888	10257612	.	+	.	ID=Os03t0294100-00;Name=Os03t0294100-00;Locus_id=Os03g0294100;Oryzabase Gene Symbol Synonym(s)=SIP32;Oryzabase Gene Name Synonym(s)=SKIP interacting protein 32%2C SKIPa-interacting protein 32%2C SKIPa-interacting protein 32;Note=Similar to pherophorin like protein.;Transcript_evidence=EU368722 (DDBJ%2C Best hit);ORF_evidence=NP_001152156.1 (RefSeq);Oryzabase=9964;TENOR=Os03t0294100-00;KEGG=Os03t0294100-00
Chr03	irgsp1_rep	CDS	10255888	10256028	.	+	0	Parent=Os03t0294100-00
Chr03	irgsp1_rep	CDS	10256477	10256793	.	+	0	Parent=Os03t0294100-00
Chr03	irgsp1_rep	CDS	10256891	10257002	.	+	1	Parent=Os03t0294100-00
Chr03	irgsp1_rep	CDS	10257206	10257337	.	+	0	Parent=Os03t0294100-00
Chr03	irgsp1_rep	CDS	10257433	10257507	.	+	0	Parent=Os03t0294100-00
Chr03	irgsp1_rep	three_prime_UTR	10257508	10257612	.	+	.	Parent=Os03t0294100-00
Chr03	irgsp1_rep	mRNA	10258670	10270774	.	+	.	ID=Os03t0294200-01;Name=Os03t0294200-01;Locus_id=Os03g0294200;Oryzabase Gene Symbol Synonym(s)=OsF2KP2;Oryzabase Gene Name Synonym(s)=Fru-6-P 2-kinase/Fru-bisphosphatase%2C fructose-6-phosphate-2-kinase/fructose-2%2C 6-bisphosphatase 2%2C F6P2K/F26BPase2;Note=Similar to Fructose-6-phosphate-2-kinase/fructose-2%2C 6-bisphosphatase.;Transcript_evidence=AK069285 (DDBJ%2C Best hit);ORF_evidence=Q10MV4 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: fructose metabolic process (GO:0006000),Biological Process: fructose 2%2C6-bisphosphate metabolic process (GO:0006003),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: 6-phosphofructo-2-kinase activity (GO:0003873),Molecular Function: fructose-2%2C6-bisphosphate 2-phosphatase activity (GO:0004331),Molecular Function: ATP binding (GO:0005524),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Phosphoglycerate/bisphosphoglycerate mutase%2C active site (IPR001345),Glycoside hydrolase%2C carbohydrate-binding (IPR002044),Fructose-2%2C6-bisphosphatase (IPR003094),Histidine phosphatase superfamily%2C clade-1 (IPR013078),6-phosphofructo-2-kinase (IPR013079),Immunoglobulin-like fold (IPR013783),Carbohydrate-binding-like fold (IPR013784),Bifunctional 6-phosphofructo-2-kinase/fructose-2%2C 6-bisphosphate 2-phosphatase (IPR016260);NIAS_FLcDNA=J023011N22;Oryzabase=12459,15781;Expression=AK069285;TENOR=Os03t0294200-01;KEGG=Os03t0294200-01 (EC:3.1.3.46)
Chr03	irgsp1_rep	five_prime_UTR	10258670	10258707	.	+	.	Parent=Os03t0294200-01
Chr03	irgsp1_rep	CDS	10258708	10258857	.	+	0	Parent=Os03t0294200-01
Chr03	irgsp1_rep	CDS	10258956	10259019	.	+	0	Parent=Os03t0294200-01
Chr03	irgsp1_rep	CDS	10259424	10259719	.	+	2	Parent=Os03t0294200-01
Chr03	irgsp1_rep	CDS	10261323	10261463	.	+	0	Parent=Os03t0294200-01
Chr03	irgsp1_rep	CDS	10262321	10262413	.	+	0	Parent=Os03t0294200-01
Chr03	irgsp1_rep	CDS	10263924	10264022	.	+	0	Parent=Os03t0294200-01
Chr03	irgsp1_rep	CDS	10264112	10264141	.	+	0	Parent=Os03t0294200-01
Chr03	irgsp1_rep	CDS	10264221	10264274	.	+	0	Parent=Os03t0294200-01
Chr03	irgsp1_rep	CDS	10264550	10264603	.	+	0	Parent=Os03t0294200-01
Chr03	irgsp1_rep	CDS	10264672	10264749	.	+	0	Parent=Os03t0294200-01
Chr03	irgsp1_rep	CDS	10266179	10266270	.	+	0	Parent=Os03t0294200-01
Chr03	irgsp1_rep	CDS	10266347	10266404	.	+	1	Parent=Os03t0294200-01
Chr03	irgsp1_rep	CDS	10266504	10266578	.	+	0	Parent=Os03t0294200-01
Chr03	irgsp1_rep	CDS	10266880	10266927	.	+	0	Parent=Os03t0294200-01
Chr03	irgsp1_rep	CDS	10267875	10267972	.	+	0	Parent=Os03t0294200-01
Chr03	irgsp1_rep	CDS	10268767	10268842	.	+	1	Parent=Os03t0294200-01
Chr03	irgsp1_rep	CDS	10268917	10268979	.	+	0	Parent=Os03t0294200-01
Chr03	irgsp1_rep	CDS	10269081	10269172	.	+	0	Parent=Os03t0294200-01
Chr03	irgsp1_rep	CDS	10269607	10269675	.	+	1	Parent=Os03t0294200-01
Chr03	irgsp1_rep	CDS	10269781	10269844	.	+	1	Parent=Os03t0294200-01
Chr03	irgsp1_rep	CDS	10269921	10269986	.	+	0	Parent=Os03t0294200-01
Chr03	irgsp1_rep	CDS	10270084	10270185	.	+	0	Parent=Os03t0294200-01
Chr03	irgsp1_rep	three_prime_UTR	10270186	10270774	.	+	.	Parent=Os03t0294200-01
Chr03	irgsp1_rep	mRNA	10262319	10270527	.	+	.	ID=Os03t0294200-02;Name=Os03t0294200-02;Locus_id=Os03g0294200;Oryzabase Gene Symbol Synonym(s)=OsF2KP2;Oryzabase Gene Name Synonym(s)=Fru-6-P 2-kinase/Fru-bisphosphatase%2C fructose-6-phosphate-2-kinase/fructose-2%2C 6-bisphosphatase 2%2C F6P2K/F26BPase2;Note=Similar to F2KP (FRUCTOSE-2%2C6-BISPHOSPHATASE)%3B fructose-2%2C6-bisphosphate 2-phosphatase.;Transcript_evidence=AK105724 (DDBJ%2C Best hit);ORF_evidence=NP_172191.1 (RefSeq);GO=Biological Process: fructose metabolic process (GO:0006000),Biological Process: fructose 2%2C6-bisphosphate metabolic process (GO:0006003),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: 6-phosphofructo-2-kinase activity (GO:0003873),Molecular Function: fructose-2%2C6-bisphosphate 2-phosphatase activity (GO:0004331),Molecular Function: ATP binding (GO:0005524);InterPro=Phosphoglycerate/bisphosphoglycerate mutase%2C active site (IPR001345),Fructose-2%2C6-bisphosphatase (IPR003094),Histidine phosphatase superfamily%2C clade-1 (IPR013078),6-phosphofructo-2-kinase (IPR013079),Bifunctional 6-phosphofructo-2-kinase/fructose-2%2C 6-bisphosphate 2-phosphatase (IPR016260);NIAS_FLcDNA=001-201-G07;Oryzabase=12459,15781;Expression=AK105724;TENOR=Os03t0294200-02;KEGG=Os03t0294200-02 (EC:2.7.1.105%2C EC:3.1.3.46)
Chr03	irgsp1_rep	five_prime_UTR	10262319	10262323	.	+	.	Parent=Os03t0294200-02
Chr03	irgsp1_rep	CDS	10262324	10262413	.	+	0	Parent=Os03t0294200-02
Chr03	irgsp1_rep	CDS	10263924	10264022	.	+	0	Parent=Os03t0294200-02
Chr03	irgsp1_rep	CDS	10264112	10264141	.	+	0	Parent=Os03t0294200-02
Chr03	irgsp1_rep	CDS	10264221	10264274	.	+	0	Parent=Os03t0294200-02
Chr03	irgsp1_rep	CDS	10264550	10264603	.	+	0	Parent=Os03t0294200-02
Chr03	irgsp1_rep	CDS	10264672	10264749	.	+	0	Parent=Os03t0294200-02
Chr03	irgsp1_rep	CDS	10266179	10266270	.	+	0	Parent=Os03t0294200-02
Chr03	irgsp1_rep	CDS	10266347	10266404	.	+	1	Parent=Os03t0294200-02
Chr03	irgsp1_rep	CDS	10266504	10266578	.	+	0	Parent=Os03t0294200-02
Chr03	irgsp1_rep	CDS	10266880	10266927	.	+	0	Parent=Os03t0294200-02
Chr03	irgsp1_rep	CDS	10267875	10267972	.	+	0	Parent=Os03t0294200-02
Chr03	irgsp1_rep	CDS	10268767	10268842	.	+	1	Parent=Os03t0294200-02
Chr03	irgsp1_rep	CDS	10268917	10268979	.	+	0	Parent=Os03t0294200-02
Chr03	irgsp1_rep	CDS	10269081	10269172	.	+	0	Parent=Os03t0294200-02
Chr03	irgsp1_rep	CDS	10269607	10269675	.	+	1	Parent=Os03t0294200-02
Chr03	irgsp1_rep	CDS	10269781	10269844	.	+	1	Parent=Os03t0294200-02
Chr03	irgsp1_rep	CDS	10269921	10269986	.	+	0	Parent=Os03t0294200-02
Chr03	irgsp1_rep	CDS	10270084	10270185	.	+	0	Parent=Os03t0294200-02
Chr03	irgsp1_rep	three_prime_UTR	10270186	10270527	.	+	.	Parent=Os03t0294200-02
Chr03	irgsp1_rep	mRNA	10279758	10281523	.	-	.	ID=Os03t0294600-01;Name=Os03t0294600-01;Locus_id=Os03g0294600;Note=Similar to Importin-beta1.;Transcript_evidence=AK110762 (DDBJ%2C Best hit);ORF_evidence=Q10MU9 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=002-170-H08;Expression=AK110762;TENOR=Os03t0294600-01;KEGG=Os03t0294600-01
Chr03	irgsp1_rep	five_prime_UTR	10281523	10281523	.	-	.	Parent=Os03t0294600-01
Chr03	irgsp1_rep	CDS	10280606	10281522	.	-	0	Parent=Os03t0294600-01
Chr03	irgsp1_rep	CDS	10280149	10280347	.	-	1	Parent=Os03t0294600-01
Chr03	irgsp1_rep	three_prime_UTR	10279758	10280148	.	-	.	Parent=Os03t0294600-01
Chr03	irgsp1_rep	mRNA	10280144	10283019	.	+	.	ID=Os03t0294650-00;Name=Os03t0294650-00;Locus_id=Os03g0294650;Note=Hypothetical protein.;Transcript_evidence=tplb0055o07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0294650-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	10280144	10280354	.	+	.	Parent=Os03t0294650-00
Chr03	irgsp1_rep	five_prime_UTR	10280614	10281750	.	+	.	Parent=Os03t0294650-00
Chr03	irgsp1_rep	CDS	10281751	10282047	.	+	0	Parent=Os03t0294650-00
Chr03	irgsp1_rep	three_prime_UTR	10282048	10283019	.	+	.	Parent=Os03t0294650-00
Chr03	irgsp1_rep	mRNA	10287901	10291530	.	+	.	ID=Os03t0294700-01;Name=Os03t0294700-01;Locus_id=Os03g0294700;RAP-DB Gene Symbol Synonym(s)=OsETOL1%2C OsSTA97;RAP-DB Gene Name Synonym(s)=ETHYLENE OVERPRODUCER 1-like gene 1;Oryzabase Gene Symbol Synonym(s)=OsETOL1%2C OsSTA97%2C ETOL1%2C STA97;Oryzabase Gene Name Synonym(s)=ETHYLENE OVERPRODUCER 1-like gene 1;Note=Putative E3 ubiquitin ligase%2C Ethylene-overproduction protein1%2C Drought and submergence tolerance%2C Regulation of ethylene synthesis;Transcript_evidence=AK111836;ORF_evidence=Q10MU8;GO=Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical domain (IPR011990),Tetratricopeptide repeat (IPR019734),Tetratricopeptide TPR2 (IPR013105),Tetratricopeptide TPR1 (IPR001440);NIAS_FLcDNA=J023139C14;Manual Curation=January 15%2C 2015;Literature_PMID=24641694;Oryzabase=15663;TENOR=Os03t0294700-01;KEGG=Os03t0294700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	10287901	10288074	.	+	.	Parent=Os03t0294700-01
Chr03	irgsp1_rep	CDS	10288075	10288854	.	+	0	Parent=Os03t0294700-01
Chr03	irgsp1_rep	CDS	10289345	10289638	.	+	0	Parent=Os03t0294700-01
Chr03	irgsp1_rep	CDS	10289716	10290025	.	+	0	Parent=Os03t0294700-01
Chr03	irgsp1_rep	CDS	10290775	10291004	.	+	2	Parent=Os03t0294700-01
Chr03	irgsp1_rep	three_prime_UTR	10291005	10291530	.	+	.	Parent=Os03t0294700-01
Chr03	irgsp1_rep	mRNA	10292291	10295620	.	-	.	ID=Os03t0294800-01;Name=Os03t0294800-01;Locus_id=Os03g0294800;Note=Similar to Ser-thr protein kinase (Fragment).;Transcript_evidence=AK066380 (DDBJ%2C Best hit);ORF_evidence=B6SVW1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J013059L17;TENOR=Os03t0294800-01
Chr03	irgsp1_rep	five_prime_UTR	10295469	10295620	.	-	.	Parent=Os03t0294800-01
Chr03	irgsp1_rep	CDS	10295384	10295468	.	-	0	Parent=Os03t0294800-01
Chr03	irgsp1_rep	CDS	10295226	10295289	.	-	2	Parent=Os03t0294800-01
Chr03	irgsp1_rep	CDS	10294451	10294530	.	-	1	Parent=Os03t0294800-01
Chr03	irgsp1_rep	CDS	10294008	10294373	.	-	2	Parent=Os03t0294800-01
Chr03	irgsp1_rep	CDS	10293740	10293930	.	-	2	Parent=Os03t0294800-01
Chr03	irgsp1_rep	CDS	10293508	10293640	.	-	0	Parent=Os03t0294800-01
Chr03	irgsp1_rep	CDS	10292604	10293187	.	-	2	Parent=Os03t0294800-01
Chr03	irgsp1_rep	three_prime_UTR	10292291	10292603	.	-	.	Parent=Os03t0294800-01
Chr03	irgsp1_rep	mRNA	10292312	10295413	.	-	.	ID=Os03t0294800-02;Name=Os03t0294800-02;Locus_id=Os03g0294800;Note=Similar to ATP binding protein.;Transcript_evidence=AK061955 (DDBJ%2C Best hit);ORF_evidence=B6SVW1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-042-F07;TENOR=Os03t0294800-02
Chr03	irgsp1_rep	five_prime_UTR	10295412	10295413	.	-	.	Parent=Os03t0294800-02
Chr03	irgsp1_rep	CDS	10295384	10295411	.	-	0	Parent=Os03t0294800-02
Chr03	irgsp1_rep	CDS	10295226	10295289	.	-	2	Parent=Os03t0294800-02
Chr03	irgsp1_rep	CDS	10294451	10294530	.	-	1	Parent=Os03t0294800-02
Chr03	irgsp1_rep	CDS	10294008	10294373	.	-	2	Parent=Os03t0294800-02
Chr03	irgsp1_rep	CDS	10293740	10293930	.	-	2	Parent=Os03t0294800-02
Chr03	irgsp1_rep	CDS	10293508	10293640	.	-	0	Parent=Os03t0294800-02
Chr03	irgsp1_rep	CDS	10292604	10293187	.	-	2	Parent=Os03t0294800-02
Chr03	irgsp1_rep	three_prime_UTR	10292312	10292603	.	-	.	Parent=Os03t0294800-02
Chr03	irgsp1_rep	mRNA	10298971	10305409	.	-	.	ID=Os03t0294900-01;Name=Os03t0294900-01;Locus_id=Os03g0294900;Note=Similar to Ubiquitin-activating enzyme E1.;Transcript_evidence=AK120544 (DDBJ%2C Best hit);ORF_evidence=B9F7T7 (UniProt);GO=Biological Process: protein modification process (GO:0006464),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524),Molecular Function: small protein activating enzyme activity (GO:0008641);InterPro=Ubiquitin/SUMO-activating enzyme E1 (IPR000011),Ubiquitin-activating enzyme repeat (IPR000127),UBA/THIF-type NAD/FAD binding fold (IPR000594),Molybdenum cofactor biosynthesis%2C MoeB (IPR009036),NAD(P)-binding domain (IPR016040),Ubiquitin-activating enzyme%2C E1%2C active site (IPR018074),Ubiquitin-activating enzyme%2C E1 (IPR018075),Ubiquitin-activating enzyme e1%2C C-terminal (IPR018965),Ubiquitin-activating enzyme (IPR019572),Ubiquitin-like 1 activating enzyme%2C catalytic cysteine domain (IPR023280);NIAS_FLcDNA=J013129J22;TENOR=Os03t0294900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	10305385	10305409	.	-	.	Parent=Os03t0294900-01
Chr03	irgsp1_rep	CDS	10305225	10305384	.	-	0	Parent=Os03t0294900-01
Chr03	irgsp1_rep	CDS	10304845	10305144	.	-	2	Parent=Os03t0294900-01
Chr03	irgsp1_rep	CDS	10303526	10303743	.	-	2	Parent=Os03t0294900-01
Chr03	irgsp1_rep	CDS	10302035	10302829	.	-	0	Parent=Os03t0294900-01
Chr03	irgsp1_rep	CDS	10301086	10301954	.	-	0	Parent=Os03t0294900-01
Chr03	irgsp1_rep	CDS	10300486	10300918	.	-	1	Parent=Os03t0294900-01
Chr03	irgsp1_rep	CDS	10299254	10299850	.	-	0	Parent=Os03t0294900-01
Chr03	irgsp1_rep	three_prime_UTR	10298971	10299253	.	-	.	Parent=Os03t0294900-01
Chr03	irgsp1_rep	mRNA	10299013	10305134	.	+	.	ID=Os03t0294975-00;Name=Os03t0294975-00;Locus_id=Os03g0294975;Note=Hypothetical protein.;Transcript_evidence=tplb0053b11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0294975-00
Chr03	irgsp1_rep	five_prime_UTR	10299013	10299841	.	+	.	Parent=Os03t0294975-00
Chr03	irgsp1_rep	five_prime_UTR	10300478	10300921	.	+	.	Parent=Os03t0294975-00
Chr03	irgsp1_rep	five_prime_UTR	10301091	10301968	.	+	.	Parent=Os03t0294975-00
Chr03	irgsp1_rep	five_prime_UTR	10302046	10302473	.	+	.	Parent=Os03t0294975-00
Chr03	irgsp1_rep	CDS	10302474	10302779	.	+	0	Parent=Os03t0294975-00
Chr03	irgsp1_rep	three_prime_UTR	10302780	10302831	.	+	.	Parent=Os03t0294975-00
Chr03	irgsp1_rep	three_prime_UTR	10303524	10303746	.	+	.	Parent=Os03t0294975-00
Chr03	irgsp1_rep	three_prime_UTR	10304848	10305134	.	+	.	Parent=Os03t0294975-00
Chr03	irgsp1_rep	mRNA	10314345	10316584	.	-	.	ID=Os03t0295300-01;Name=Os03t0295300-01;Locus_id=Os03g0295300;Note=Protein of unknown function DUF3615 domain containing protein.;Transcript_evidence=AK063031 (DDBJ%2C Best hit);ORF_evidence=Q10MU4 (UniProt);InterPro=Protein of unknown function DUF3615 (IPR022059);NIAS_FLcDNA=001-110-C05;Expression=AK063031;TENOR=Os03t0295300-01;KEGG=Os03t0295300-01
Chr03	irgsp1_rep	CDS	10316451	10316584	.	-	0	Parent=Os03t0295300-01
Chr03	irgsp1_rep	CDS	10315140	10315221	.	-	1	Parent=Os03t0295300-01
Chr03	irgsp1_rep	CDS	10314918	10315055	.	-	0	Parent=Os03t0295300-01
Chr03	irgsp1_rep	CDS	10314605	10314649	.	-	0	Parent=Os03t0295300-01
Chr03	irgsp1_rep	three_prime_UTR	10314345	10314604	.	-	.	Parent=Os03t0295300-01
Chr03	irgsp1_rep	mRNA	10320222	10324794	.	-	.	ID=Os03t0295400-01;Name=Os03t0295400-01;Locus_id=Os03g0295400;Oryzabase Gene Name Synonym(s)=DNA-directed RNA polymerase 40K polypeptide;Note=Similar to Ferredoxin.;Transcript_evidence=AK102201 (DDBJ%2C Best hit);ORF_evidence=Q10MU3 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899),Molecular Function: protein dimerization activity (GO:0046983);InterPro=DNA-directed RNA polymerase%2C 30-40kDa subunit%2C conserved site (IPR001514),DNA-directed RNA polymerase%2C RBP11-like (IPR009025),DNA-directed RNA polymerase%2C dimerisation (IPR011261),DNA-directed RNA polymerase%2C insert domain (IPR011262),DNA-directed RNA polymerase%2C RpoA/D/Rpb3-type (IPR011263);NIAS_FLcDNA=J033087E17;Oryzabase=17619;Expression=AK102201;TENOR=Os03t0295400-01;KEGG=Os03t0295400-01 (EC:2.7.7.6)
Chr03	irgsp1_rep	five_prime_UTR	10324607	10324794	.	-	.	Parent=Os03t0295400-01
Chr03	irgsp1_rep	CDS	10324475	10324606	.	-	0	Parent=Os03t0295400-01
Chr03	irgsp1_rep	CDS	10323910	10324095	.	-	0	Parent=Os03t0295400-01
Chr03	irgsp1_rep	CDS	10323660	10323789	.	-	0	Parent=Os03t0295400-01
Chr03	irgsp1_rep	CDS	10323492	10323572	.	-	2	Parent=Os03t0295400-01
Chr03	irgsp1_rep	CDS	10322372	10322553	.	-	2	Parent=Os03t0295400-01
Chr03	irgsp1_rep	CDS	10321908	10322003	.	-	0	Parent=Os03t0295400-01
Chr03	irgsp1_rep	CDS	10321726	10321819	.	-	0	Parent=Os03t0295400-01
Chr03	irgsp1_rep	CDS	10320691	10320825	.	-	2	Parent=Os03t0295400-01
Chr03	irgsp1_rep	CDS	10320455	10320558	.	-	2	Parent=Os03t0295400-01
Chr03	irgsp1_rep	three_prime_UTR	10320222	10320454	.	-	.	Parent=Os03t0295400-01
Chr03	irgsp1_rep	mRNA	10325025	10330450	.	+	.	ID=Os03t0295500-01;Name=Os03t0295500-01;Locus_id=Os03g0295500;Note=CHCH domain containing protein.;Transcript_evidence=AK240869 (DDBJ%2C Best hit);ORF_evidence=B6UD55 (UniProt);InterPro=CHCH (IPR010625);NIAS_FLcDNA=J065024G23;TENOR=Os03t0295500-01;KEGG=Os03t0295500-01 (EC:1.6.5.3%2C EC:1.6.99.3)
Chr03	irgsp1_rep	five_prime_UTR	10325025	10325073	.	+	.	Parent=Os03t0295500-01
Chr03	irgsp1_rep	CDS	10325074	10325270	.	+	0	Parent=Os03t0295500-01
Chr03	irgsp1_rep	CDS	10330029	10330164	.	+	1	Parent=Os03t0295500-01
Chr03	irgsp1_rep	three_prime_UTR	10330165	10330450	.	+	.	Parent=Os03t0295500-01
Chr03	irgsp1_rep	mRNA	10333323	10336943	.	-	.	ID=Os03t0295600-01;Name=Os03t0295600-01;Locus_id=Os03g0295600;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK102156 (DDBJ%2C Best hit);ORF_evidence=NP_001148123.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033086F15;TENOR=Os03t0295600-01
Chr03	irgsp1_rep	five_prime_UTR	10336143	10336943	.	-	.	Parent=Os03t0295600-01
Chr03	irgsp1_rep	CDS	10335745	10336142	.	-	0	Parent=Os03t0295600-01
Chr03	irgsp1_rep	CDS	10334263	10335358	.	-	1	Parent=Os03t0295600-01
Chr03	irgsp1_rep	CDS	10333452	10333736	.	-	0	Parent=Os03t0295600-01
Chr03	irgsp1_rep	three_prime_UTR	10333323	10333451	.	-	.	Parent=Os03t0295600-01
Chr03	irgsp1_rep	mRNA	10333331	10336620	.	-	.	ID=Os03t0295600-02;Name=Os03t0295600-02;Locus_id=Os03g0295600;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK072429 (DDBJ%2C Best hit);ORF_evidence=NP_001148123.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023093L11;TENOR=Os03t0295600-02
Chr03	irgsp1_rep	five_prime_UTR	10336143	10336620	.	-	.	Parent=Os03t0295600-02
Chr03	irgsp1_rep	CDS	10335745	10336142	.	-	0	Parent=Os03t0295600-02
Chr03	irgsp1_rep	CDS	10334263	10335358	.	-	1	Parent=Os03t0295600-02
Chr03	irgsp1_rep	CDS	10333452	10333736	.	-	0	Parent=Os03t0295600-02
Chr03	irgsp1_rep	three_prime_UTR	10333331	10333451	.	-	.	Parent=Os03t0295600-02
Chr03	irgsp1_rep	mRNA	10344987	10355461	.	+	.	ID=Os03t0295700-01;Name=Os03t0295700-01;Locus_id=Os03g0295700;Note=Conserved hypothetical protein.;Transcript_evidence=AK067856 (DDBJ%2C Best hit);ORF_evidence=B9F7U3 (UniProt);NIAS_FLcDNA=J013121D21;Expression=AK067856;TENOR=Os03t0295700-01;KEGG=Os03t0295700-01
Chr03	irgsp1_rep	five_prime_UTR	10344987	10345173	.	+	.	Parent=Os03t0295700-01
Chr03	irgsp1_rep	CDS	10345174	10345284	.	+	0	Parent=Os03t0295700-01
Chr03	irgsp1_rep	CDS	10345898	10345941	.	+	0	Parent=Os03t0295700-01
Chr03	irgsp1_rep	CDS	10346055	10346118	.	+	1	Parent=Os03t0295700-01
Chr03	irgsp1_rep	CDS	10346192	10346306	.	+	0	Parent=Os03t0295700-01
Chr03	irgsp1_rep	CDS	10346418	10346485	.	+	2	Parent=Os03t0295700-01
Chr03	irgsp1_rep	CDS	10346831	10346928	.	+	0	Parent=Os03t0295700-01
Chr03	irgsp1_rep	CDS	10347457	10347628	.	+	1	Parent=Os03t0295700-01
Chr03	irgsp1_rep	CDS	10348339	10348555	.	+	0	Parent=Os03t0295700-01
Chr03	irgsp1_rep	CDS	10349455	10349581	.	+	2	Parent=Os03t0295700-01
Chr03	irgsp1_rep	CDS	10349717	10349826	.	+	1	Parent=Os03t0295700-01
Chr03	irgsp1_rep	CDS	10349915	10350007	.	+	2	Parent=Os03t0295700-01
Chr03	irgsp1_rep	CDS	10350662	10350790	.	+	2	Parent=Os03t0295700-01
Chr03	irgsp1_rep	CDS	10350878	10351011	.	+	2	Parent=Os03t0295700-01
Chr03	irgsp1_rep	CDS	10351574	10351660	.	+	0	Parent=Os03t0295700-01
Chr03	irgsp1_rep	CDS	10351740	10351832	.	+	0	Parent=Os03t0295700-01
Chr03	irgsp1_rep	CDS	10351912	10351983	.	+	0	Parent=Os03t0295700-01
Chr03	irgsp1_rep	CDS	10352234	10352273	.	+	0	Parent=Os03t0295700-01
Chr03	irgsp1_rep	CDS	10352449	10352693	.	+	2	Parent=Os03t0295700-01
Chr03	irgsp1_rep	CDS	10353501	10353678	.	+	0	Parent=Os03t0295700-01
Chr03	irgsp1_rep	CDS	10353845	10354050	.	+	2	Parent=Os03t0295700-01
Chr03	irgsp1_rep	CDS	10354595	10354891	.	+	0	Parent=Os03t0295700-01
Chr03	irgsp1_rep	three_prime_UTR	10354892	10355461	.	+	.	Parent=Os03t0295700-01
Chr03	irgsp1_rep	mRNA	10355674	10359296	.	-	.	ID=Os03t0295800-01;Name=Os03t0295800-01;Locus_id=Os03g0295800;Note=Gamma interferon inducible lysosomal thiol reductase GILT family protein.;Transcript_evidence=AK071633 (DDBJ%2C Best hit);ORF_evidence=Q10MT7 (UniProt);InterPro=Gamma interferon inducible lysosomal thiol reductase GILT (IPR004911);NIAS_FLcDNA=J023102J23;Expression=AK071633;TENOR=Os03t0295800-01;KEGG=Os03t0295800-01
Chr03	irgsp1_rep	five_prime_UTR	10359196	10359296	.	-	.	Parent=Os03t0295800-01
Chr03	irgsp1_rep	CDS	10358914	10359195	.	-	0	Parent=Os03t0295800-01
Chr03	irgsp1_rep	CDS	10356742	10356807	.	-	0	Parent=Os03t0295800-01
Chr03	irgsp1_rep	CDS	10356482	10356622	.	-	0	Parent=Os03t0295800-01
Chr03	irgsp1_rep	CDS	10356222	10356314	.	-	0	Parent=Os03t0295800-01
Chr03	irgsp1_rep	CDS	10355849	10356064	.	-	0	Parent=Os03t0295800-01
Chr03	irgsp1_rep	three_prime_UTR	10355674	10355848	.	-	.	Parent=Os03t0295800-01
Chr03	irgsp1_rep	mRNA	10355725	10357321	.	-	.	ID=Os03t0295800-02;Name=Os03t0295800-02;Locus_id=Os03g0295800;Note=Similar to gamma-interferon-inducible lysosomal thiol reductase.;Transcript_evidence=AK106050 (DDBJ%2C Best hit);ORF_evidence=B6TUH5 (UniProt);InterPro=Gamma interferon inducible lysosomal thiol reductase GILT (IPR004911);NIAS_FLcDNA=001-206-F01;Expression=AK106050;TENOR=Os03t0295800-02;KEGG=Os03t0295800-02
Chr03	irgsp1_rep	five_prime_UTR	10357274	10357321	.	-	.	Parent=Os03t0295800-02
Chr03	irgsp1_rep	CDS	10357019	10357273	.	-	0	Parent=Os03t0295800-02
Chr03	irgsp1_rep	CDS	10356742	10356807	.	-	0	Parent=Os03t0295800-02
Chr03	irgsp1_rep	CDS	10356482	10356622	.	-	0	Parent=Os03t0295800-02
Chr03	irgsp1_rep	CDS	10356222	10356314	.	-	0	Parent=Os03t0295800-02
Chr03	irgsp1_rep	CDS	10355849	10356064	.	-	0	Parent=Os03t0295800-02
Chr03	irgsp1_rep	three_prime_UTR	10355725	10355848	.	-	.	Parent=Os03t0295800-02
Chr03	irgsp1_rep	mRNA	10359847	10361451	.	-	.	ID=Os03t0295866-00;Name=Os03t0295866-00;Locus_id=Os03g0295866;Note=Transcription factor IIS%2C N-terminal domain containing protein.;Transcript_evidence=BT040964 (DDBJ);ORF_evidence=Q10MT6 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Transcription factor IIS%2C N-terminal (IPR017923);TENOR=Os03t0295866-00
Chr03	irgsp1_rep	CDS	10359847	10361451	.	-	0	Parent=Os03t0295866-00
Chr03	irgsp1_rep	mRNA	10361089	10361467	.	+	.	ID=Os03t0295932-00;Name=Os03t0295932-00;Locus_id=Os03g0295932;Note=Hypothetical protein.;Transcript_evidence=EU965145 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0295932-00
Chr03	irgsp1_rep	CDS	10361089	10361467	.	+	0	Parent=Os03t0295932-00
Chr03	irgsp1_rep	mRNA	10362997	10365264	.	-	.	ID=Os03t0296000-00;Name=Os03t0296000-00;Locus_id=Os03g0296000;CGSNL Gene Symbol=TDF1;CGSNL Gene Name=DEFECTIVE IN TAPETAL DEVELOPMENT AND FUNCTION 1;Oryzabase Gene Symbol Synonym(s)=OsTDF1%2C MYB35;Oryzabase Gene Name Synonym(s)=DEFECTIVE in TAPETAL DEVELOPMENT and FUNCTION1;Note=Similar to DNA binding protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001150470.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),MYB-like (IPR017877);Oryzabase=21930;TENOR=Os03t0296000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	10365132	10365264	.	-	0	Parent=Os03t0296000-00
Chr03	irgsp1_rep	CDS	10362997	10363175	.	-	2	Parent=Os03t0296000-00
Chr03	irgsp1_rep	mRNA	10363160	10363657	.	+	.	ID=Os03t0296100-00;Name=Os03t0296100-00;Locus_id=Os03g0296100;Note=Hypothetical protein.;Transcript_evidence=EU971393 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0296100-00
Chr03	irgsp1_rep	five_prime_UTR	10363160	10363341	.	+	.	Parent=Os03t0296100-00
Chr03	irgsp1_rep	CDS	10363342	10363657	.	+	0	Parent=Os03t0296100-00
Chr03	irgsp1_rep	mRNA	10366901	10368154	.	+	.	ID=Os03t0296200-00;Name=Os03t0296200-00;Locus_id=Os03g0296200;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0003o16 (Wheat FLcDNA);ORF_evidence=NP_001173381.1 (RefSeq);TENOR=Os03t0296200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	10366901	10367098	.	+	0	Parent=Os03t0296200-00
Chr03	irgsp1_rep	CDS	10367191	10367479	.	+	0	Parent=Os03t0296200-00
Chr03	irgsp1_rep	CDS	10367594	10367607	.	+	2	Parent=Os03t0296200-00
Chr03	irgsp1_rep	three_prime_UTR	10367608	10367834	.	+	.	Parent=Os03t0296200-00
Chr03	irgsp1_rep	three_prime_UTR	10367988	10368154	.	+	.	Parent=Os03t0296200-00
Chr03	irgsp1_rep	mRNA	10368893	10372593	.	-	.	ID=Os03t0296300-01;Name=Os03t0296300-01;Locus_id=Os03g0296300;Note=Similar to mitochondrial import inner membrane translocase subunit tim22.;Transcript_evidence=AK100042 (DDBJ%2C Best hit);ORF_evidence=NP_001151600.1 (RefSeq);InterPro=Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 (IPR003397);NIAS_FLcDNA=J013152C17;TENOR=Os03t0296300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	10372363	10372593	.	-	.	Parent=Os03t0296300-01
Chr03	irgsp1_rep	CDS	10372209	10372362	.	-	0	Parent=Os03t0296300-01
Chr03	irgsp1_rep	CDS	10370241	10370431	.	-	2	Parent=Os03t0296300-01
Chr03	irgsp1_rep	CDS	10370090	10370162	.	-	0	Parent=Os03t0296300-01
Chr03	irgsp1_rep	CDS	10369369	10369454	.	-	2	Parent=Os03t0296300-01
Chr03	irgsp1_rep	three_prime_UTR	10368893	10369368	.	-	.	Parent=Os03t0296300-01
Chr03	irgsp1_rep	mRNA	10372812	10375969	.	+	.	ID=Os03t0296400-01;Name=Os03t0296400-01;Locus_id=Os03g0296400;Note=Similar to Eukaryotic translation initiation factor 2 subunit 1 (Eukaryotic translation initiation factor 2 alpha subunit) (eIF-2-alpha) (EIF- 2alpha) (EIF-2A) (Fragment).;Transcript_evidence=AK073460 (DDBJ%2C Best hit);ORF_evidence=Q2WEA7 (UniProt);GO=Cellular Component: eukaryotic translation initiation factor 2 complex (GO:0005850),Molecular Function: RNA binding (GO:0003723),Molecular Function: translation initiation factor activity (GO:0003743);InterPro=Ribosomal protein S1%2C RNA-binding domain (IPR003029),Translation initiation factor 2%2C alpha subunit (IPR011488),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),RNA-binding domain%2C S1 (IPR022967),Translation initiation factor 2%2C alpha subunit%2C middle domain (IPR024054),Translation initiation factor 2%2C alpha subunit%2C C-terminal (IPR024055);NIAS_FLcDNA=J033040F15;Expression=AK073460;TENOR=Os03t0296400-01;KEGG=Os03t0296400-01
Chr03	irgsp1_rep	five_prime_UTR	10372812	10373002	.	+	.	Parent=Os03t0296400-01
Chr03	irgsp1_rep	CDS	10373003	10373518	.	+	0	Parent=Os03t0296400-01
Chr03	irgsp1_rep	CDS	10374230	10374376	.	+	0	Parent=Os03t0296400-01
Chr03	irgsp1_rep	CDS	10374453	10374557	.	+	0	Parent=Os03t0296400-01
Chr03	irgsp1_rep	CDS	10375325	10375423	.	+	0	Parent=Os03t0296400-01
Chr03	irgsp1_rep	CDS	10375576	10375728	.	+	0	Parent=Os03t0296400-01
Chr03	irgsp1_rep	three_prime_UTR	10375729	10375969	.	+	.	Parent=Os03t0296400-01
Chr03	irgsp1_rep	mRNA	10372895	10375948	.	+	.	ID=Os03t0296400-02;Name=Os03t0296400-02;Locus_id=Os03g0296400;Note=Similar to Eukaryotic translation initiation factor 2 subunit 1 (Eukaryotic translation initiation factor 2 alpha subunit) (eIF-2-alpha) (EIF- 2alpha) (EIF-2A) (Fragment).;Transcript_evidence=AK104149 (DDBJ%2C Best hit);ORF_evidence=Q2WEA7 (UniProt);GO=Cellular Component: eukaryotic translation initiation factor 2 complex (GO:0005850),Molecular Function: RNA binding (GO:0003723),Molecular Function: translation initiation factor activity (GO:0003743);InterPro=Ribosomal protein S1%2C RNA-binding domain (IPR003029),Translation initiation factor 2%2C alpha subunit (IPR011488),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),RNA-binding domain%2C S1 (IPR022967),Translation initiation factor 2%2C alpha subunit%2C middle domain (IPR024054),Translation initiation factor 2%2C alpha subunit%2C C-terminal (IPR024055);NIAS_FLcDNA=006-208-D01;Expression=AK104149;TENOR=Os03t0296400-02;KEGG=Os03t0296400-02
Chr03	irgsp1_rep	five_prime_UTR	10372895	10373002	.	+	.	Parent=Os03t0296400-02
Chr03	irgsp1_rep	CDS	10373003	10373518	.	+	0	Parent=Os03t0296400-02
Chr03	irgsp1_rep	CDS	10374230	10374376	.	+	0	Parent=Os03t0296400-02
Chr03	irgsp1_rep	CDS	10374453	10374557	.	+	0	Parent=Os03t0296400-02
Chr03	irgsp1_rep	CDS	10375325	10375423	.	+	0	Parent=Os03t0296400-02
Chr03	irgsp1_rep	CDS	10375576	10375728	.	+	0	Parent=Os03t0296400-02
Chr03	irgsp1_rep	three_prime_UTR	10375729	10375948	.	+	.	Parent=Os03t0296400-02
Chr03	irgsp1_rep	mRNA	10372938	10376020	.	+	.	ID=Os03t0296400-03;Name=Os03t0296400-03;Locus_id=Os03g0296400;Note=Similar to Eukaryotic translation initiation factor 2 subunit 1 (Eukaryotic translation initiation factor 2 alpha subunit) (eIF-2-alpha) (EIF- 2alpha) (EIF-2A) (Fragment).;Transcript_evidence=AK105818 (DDBJ%2C Best hit);ORF_evidence=Q2WEA7 (UniProt);GO=Cellular Component: eukaryotic translation initiation factor 2 complex (GO:0005850),Molecular Function: RNA binding (GO:0003723),Molecular Function: translation initiation factor activity (GO:0003743);InterPro=Ribosomal protein S1%2C RNA-binding domain (IPR003029),Translation initiation factor 2%2C alpha subunit (IPR011488),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),RNA-binding domain%2C S1 (IPR022967),Translation initiation factor 2%2C alpha subunit%2C middle domain (IPR024054),Translation initiation factor 2%2C alpha subunit%2C C-terminal (IPR024055);NIAS_FLcDNA=001-203-D03;Expression=AK105818;TENOR=Os03t0296400-03;KEGG=Os03t0296400-03
Chr03	irgsp1_rep	five_prime_UTR	10372938	10373002	.	+	.	Parent=Os03t0296400-03
Chr03	irgsp1_rep	CDS	10373003	10373518	.	+	0	Parent=Os03t0296400-03
Chr03	irgsp1_rep	CDS	10374230	10374376	.	+	0	Parent=Os03t0296400-03
Chr03	irgsp1_rep	CDS	10374453	10374557	.	+	0	Parent=Os03t0296400-03
Chr03	irgsp1_rep	CDS	10375325	10375423	.	+	0	Parent=Os03t0296400-03
Chr03	irgsp1_rep	CDS	10375576	10375728	.	+	0	Parent=Os03t0296400-03
Chr03	irgsp1_rep	three_prime_UTR	10375729	10376020	.	+	.	Parent=Os03t0296400-03
Chr03	irgsp1_rep	mRNA	10376613	10379598	.	+	.	ID=Os03t0296500-00;Name=Os03t0296500-00;Locus_id=Os03g0296500;Note=Similar to Glycosyl hydrolases family 17 protein%2C expressed.;Transcript_evidence=BT033454 (DDBJ);ORF_evidence=Q10MT1 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);TENOR=Os03t0296500-00;KEGG=Os03t0296500-00
Chr03	irgsp1_rep	five_prime_UTR	10376613	10376698	.	+	.	Parent=Os03t0296500-00
Chr03	irgsp1_rep	CDS	10376699	10377063	.	+	0	Parent=Os03t0296500-00
Chr03	irgsp1_rep	CDS	10378290	10379391	.	+	1	Parent=Os03t0296500-00
Chr03	irgsp1_rep	three_prime_UTR	10379392	10379598	.	+	.	Parent=Os03t0296500-00
Chr03	irgsp1_rep	mRNA	10380090	10380764	.	+	.	ID=Os03t0296600-01;Name=Os03t0296600-01;Locus_id=Os03g0296600;Note=Similar to ECA1 protein.;Transcript_evidence=AK109176 (DDBJ%2C Best hit);ORF_evidence=Q9SES8 (UniProt);InterPro=Protein of unknown function DUF784 (IPR008502);NIAS_FLcDNA=002-155-H11;Oryzabase=22027;Expression=AK109176;TENOR=Os03t0296600-01;KEGG=Os03t0296600-01
Chr03	irgsp1_rep	five_prime_UTR	10380090	10380151	.	+	.	Parent=Os03t0296600-01
Chr03	irgsp1_rep	CDS	10380152	10380607	.	+	0	Parent=Os03t0296600-01
Chr03	irgsp1_rep	three_prime_UTR	10380608	10380764	.	+	.	Parent=Os03t0296600-01
Chr03	irgsp1_rep	mRNA	10381358	10387602	.	+	.	ID=Os03t0296700-01;Name=Os03t0296700-01;Locus_id=Os03g0296700;Note=7TM GPCR%2C rhodopsin-like domain containing protein.;Transcript_evidence=AK067332 (DDBJ%2C Best hit);ORF_evidence=B9F7U5 (UniProt);InterPro=Autophagy-related protein 27 (IPR018939);NIAS_FLcDNA=J013104A02;Expression=AK067332;TENOR=Os03t0296700-01;KEGG=Os03t0296700-01
Chr03	irgsp1_rep	five_prime_UTR	10381358	10381538	.	+	.	Parent=Os03t0296700-01
Chr03	irgsp1_rep	CDS	10381539	10381738	.	+	0	Parent=Os03t0296700-01
Chr03	irgsp1_rep	CDS	10382138	10382180	.	+	1	Parent=Os03t0296700-01
Chr03	irgsp1_rep	CDS	10382391	10382444	.	+	0	Parent=Os03t0296700-01
Chr03	irgsp1_rep	CDS	10383036	10383099	.	+	0	Parent=Os03t0296700-01
Chr03	irgsp1_rep	CDS	10383299	10383355	.	+	2	Parent=Os03t0296700-01
Chr03	irgsp1_rep	CDS	10383430	10383524	.	+	2	Parent=Os03t0296700-01
Chr03	irgsp1_rep	CDS	10383638	10383676	.	+	0	Parent=Os03t0296700-01
Chr03	irgsp1_rep	CDS	10383750	10383838	.	+	0	Parent=Os03t0296700-01
Chr03	irgsp1_rep	CDS	10383936	10384014	.	+	1	Parent=Os03t0296700-01
Chr03	irgsp1_rep	CDS	10385107	10385181	.	+	0	Parent=Os03t0296700-01
Chr03	irgsp1_rep	three_prime_UTR	10385182	10385460	.	+	.	Parent=Os03t0296700-01
Chr03	irgsp1_rep	three_prime_UTR	10385962	10387602	.	+	.	Parent=Os03t0296700-01
Chr03	irgsp1_rep	mRNA	10386135	10386806	.	+	.	ID=Os03t0296700-02;Name=Os03t0296700-02;Locus_id=Os03g0296700;Note=Non-protein coding transcript.;Transcript_evidence=AK121470 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023148D14;TENOR=Os03t0296700-02
Chr03	irgsp1_rep	exon	10386135	10386806	.	+	.	Parent=Os03t0296700-02
Chr03	irgsp1_rep	mRNA	10388030	10390831	.	+	.	ID=Os03t0296800-01;Name=Os03t0296800-01;Locus_id=Os03g0296800;Oryzabase Gene Symbol Synonym(s)=MIT;Oryzabase Gene Name Synonym(s)=mitochondrial Fe transporter;Note=Mitochondrial carrier protein domain containing protein.;Transcript_evidence=AK058471 (DDBJ%2C Best hit);ORF_evidence=NP_001151324.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial inner membrane (GO:0005743),Molecular Function: binding (GO:0005488);InterPro=Mitochondrial carrier protein (IPR002067),Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=001-016-B10;Oryzabase=19638;Expression=AK058471;TENOR=Os03t0296800-01;KEGG=Os03t0296800-01
Chr03	irgsp1_rep	five_prime_UTR	10388030	10388137	.	+	.	Parent=Os03t0296800-01
Chr03	irgsp1_rep	CDS	10388138	10388920	.	+	0	Parent=Os03t0296800-01
Chr03	irgsp1_rep	CDS	10390359	10390562	.	+	0	Parent=Os03t0296800-01
Chr03	irgsp1_rep	three_prime_UTR	10390563	10390831	.	+	.	Parent=Os03t0296800-01
Chr03	irgsp1_rep	mRNA	10388034	10390923	.	+	.	ID=Os03t0296800-02;Name=Os03t0296800-02;Locus_id=Os03g0296800;Oryzabase Gene Symbol Synonym(s)=MIT;Oryzabase Gene Name Synonym(s)=mitochondrial Fe transporter;Note=Hypothetical conserved gene.;Transcript_evidence=AK067646 (DDBJ%2C Best hit);ORF_evidence=B8AM08 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial inner membrane (GO:0005743),Molecular Function: binding (GO:0005488);InterPro=Mitochondrial carrier protein (IPR002067),Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J013112D16;Oryzabase=19638;Expression=AK067646;TENOR=Os03t0296800-02;KEGG=Os03t0296800-02
Chr03	irgsp1_rep	five_prime_UTR	10388034	10388137	.	+	.	Parent=Os03t0296800-02
Chr03	irgsp1_rep	CDS	10388138	10388983	.	+	0	Parent=Os03t0296800-02
Chr03	irgsp1_rep	three_prime_UTR	10388984	10390923	.	+	.	Parent=Os03t0296800-02
Chr03	irgsp1_rep	mRNA	10391791	10392766	.	-	.	ID=Os03t0297000-01;Name=Os03t0297000-01;Locus_id=Os03g0297000;Note=Protein of unknown function DUF538 family protein.;Transcript_evidence=AK101359 (DDBJ%2C Best hit);ORF_evidence=B6TJ89 (UniProt);InterPro=Protein of unknown function DUF538 (IPR007493);NIAS_FLcDNA=J033035E16;Expression=AK101359;TENOR=Os03t0297000-01;KEGG=Os03t0297000-01
Chr03	irgsp1_rep	five_prime_UTR	10392558	10392766	.	-	.	Parent=Os03t0297000-01
Chr03	irgsp1_rep	CDS	10392471	10392557	.	-	0	Parent=Os03t0297000-01
Chr03	irgsp1_rep	CDS	10391937	10392362	.	-	0	Parent=Os03t0297000-01
Chr03	irgsp1_rep	three_prime_UTR	10391791	10391936	.	-	.	Parent=Os03t0297000-01
Chr03	irgsp1_rep	mRNA	10391789	10392658	.	-	.	ID=Os03t0297000-02;Name=Os03t0297000-02;Locus_id=Os03g0297000;Note=Protein of unknown function DUF538 family protein.;Transcript_evidence=AK064307 (DDBJ%2C Best hit);ORF_evidence=B6TJ89 (UniProt);InterPro=Protein of unknown function DUF538 (IPR007493);NIAS_FLcDNA=002-107-B09;TENOR=Os03t0297000-02
Chr03	irgsp1_rep	five_prime_UTR	10392558	10392658	.	-	.	Parent=Os03t0297000-02
Chr03	irgsp1_rep	CDS	10392471	10392557	.	-	0	Parent=Os03t0297000-02
Chr03	irgsp1_rep	CDS	10391937	10392362	.	-	0	Parent=Os03t0297000-02
Chr03	irgsp1_rep	three_prime_UTR	10391789	10391936	.	-	.	Parent=Os03t0297000-02
Chr03	irgsp1_rep	mRNA	10393657	10395829	.	+	.	ID=Os03t0297100-01;Name=Os03t0297100-01;Locus_id=Os03g0297100;CGSNL Gene Symbol=RPS7A;CGSNL Gene Name=RIBOSOMAL PROTEIN S7A;Oryzabase Gene Symbol Synonym(s)=RPS7a%2C OsRPS7a;Oryzabase Gene Name Synonym(s)=ribosomal protein S7a%2C ribosomal protein small subunit 7a;Note=40S ribosomal protein S7.;Transcript_evidence=AK122143 (DDBJ%2C Best hit),AK059192 (DDBJ%2C Best hit);ORF_evidence=Q5I7K2 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S7e (IPR000554);NIAS_FLcDNA=J033136J20,001-023-H09;Oryzabase=22172;TENOR=Os03t0297100-01
Chr03	irgsp1_rep	five_prime_UTR	10393657	10393710	.	+	.	Parent=Os03t0297100-01
Chr03	irgsp1_rep	five_prime_UTR	10393860	10393876	.	+	.	Parent=Os03t0297100-01
Chr03	irgsp1_rep	CDS	10393877	10393951	.	+	0	Parent=Os03t0297100-01
Chr03	irgsp1_rep	CDS	10394026	10394099	.	+	0	Parent=Os03t0297100-01
Chr03	irgsp1_rep	CDS	10394226	10394349	.	+	1	Parent=Os03t0297100-01
Chr03	irgsp1_rep	CDS	10394961	10395143	.	+	0	Parent=Os03t0297100-01
Chr03	irgsp1_rep	CDS	10395392	10395514	.	+	0	Parent=Os03t0297100-01
Chr03	irgsp1_rep	three_prime_UTR	10395515	10395829	.	+	.	Parent=Os03t0297100-01
Chr03	irgsp1_rep	mRNA	10397906	10400008	.	+	.	ID=Os03t0297300-01;Name=Os03t0297300-01;Locus_id=Os03g0297300;Note=Similar to 40S ribosomal protein S7.;Transcript_evidence=AK061276 (DDBJ%2C Best hit);ORF_evidence=B6SHM7 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S7e (IPR000554);NIAS_FLcDNA=006-212-E11;TENOR=Os03t0297300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	10397906	10397970	.	+	.	Parent=Os03t0297300-01
Chr03	irgsp1_rep	five_prime_UTR	10398100	10398116	.	+	.	Parent=Os03t0297300-01
Chr03	irgsp1_rep	CDS	10398117	10398191	.	+	0	Parent=Os03t0297300-01
Chr03	irgsp1_rep	CDS	10398266	10398339	.	+	0	Parent=Os03t0297300-01
Chr03	irgsp1_rep	CDS	10398470	10398593	.	+	1	Parent=Os03t0297300-01
Chr03	irgsp1_rep	CDS	10399216	10399222	.	+	0	Parent=Os03t0297300-01
Chr03	irgsp1_rep	CDS	10399311	10399333	.	+	2	Parent=Os03t0297300-01
Chr03	irgsp1_rep	three_prime_UTR	10399334	10399398	.	+	.	Parent=Os03t0297300-01
Chr03	irgsp1_rep	three_prime_UTR	10399648	10400008	.	+	.	Parent=Os03t0297300-01
Chr03	irgsp1_rep	mRNA	10400794	10404233	.	-	.	ID=Os03t0297400-01;Name=Os03t0297400-01;Locus_id=Os03g0297400;Note=Acyl transferase domain containing protein.;Transcript_evidence=AK101597 (DDBJ%2C Best hit),AK060653 (DDBJ%2C Best hit),AK061403 (DDBJ%2C Best hit);ORF_evidence=B6TNM0 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: [acyl-carrier-protein] S-malonyltransferase activity (GO:0004314),Molecular Function: binding (GO:0005488),Molecular Function: transferase activity (GO:0016740);InterPro=Acyl transferase domain (IPR001227),Malonyl CoA-acyl carrier protein transacylase (IPR004410),Acyl transferase (IPR014043),Acyl transferase/acyl hydrolase/lysophospholipase (IPR016035),Malonyl-CoA ACP transacylase%2C ACP-binding (IPR016036);NIAS_FLcDNA=J033051G22,001-027-H08,006-305-H10;Expression=AK101597;TENOR=Os03t0297400-01;KEGG=Os03t0297400-01 (EC:2.3.1.39)
Chr03	irgsp1_rep	five_prime_UTR	10404163	10404233	.	-	.	Parent=Os03t0297400-01
Chr03	irgsp1_rep	CDS	10403890	10404162	.	-	0	Parent=Os03t0297400-01
Chr03	irgsp1_rep	CDS	10403343	10403428	.	-	0	Parent=Os03t0297400-01
Chr03	irgsp1_rep	CDS	10403137	10403203	.	-	1	Parent=Os03t0297400-01
Chr03	irgsp1_rep	CDS	10402619	10402761	.	-	0	Parent=Os03t0297400-01
Chr03	irgsp1_rep	CDS	10402343	10402391	.	-	1	Parent=Os03t0297400-01
Chr03	irgsp1_rep	CDS	10402119	10402256	.	-	0	Parent=Os03t0297400-01
Chr03	irgsp1_rep	CDS	10401955	10402035	.	-	0	Parent=Os03t0297400-01
Chr03	irgsp1_rep	CDS	10401422	10401598	.	-	0	Parent=Os03t0297400-01
Chr03	irgsp1_rep	CDS	10401231	10401317	.	-	0	Parent=Os03t0297400-01
Chr03	irgsp1_rep	CDS	10401046	10401108	.	-	0	Parent=Os03t0297400-01
Chr03	irgsp1_rep	three_prime_UTR	10400794	10401045	.	-	.	Parent=Os03t0297400-01
Chr03	irgsp1_rep	mRNA	10418661	10419833	.	-	.	ID=Os03t0297600-01;Name=Os03t0297600-01;Locus_id=Os03g0297600;RAP-DB Gene Symbol Synonym(s)=OsPYL6;RAP-DB Gene Name Synonym(s)=pyrabactin resistance 1-like 6;CGSNL Gene Symbol=PYL/RCAR4;CGSNL Gene Name=PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 4;Oryzabase Gene Symbol Synonym(s)=OsPYL/RCAR4%2C PYL4%2C OsPYL4%2C OsPYL6%2C PYL6;Oryzabase Gene Name Synonym(s)=pyrabactin resistance-like 4%2C PYR1-like 6%2C pyrabactin resistance 1-like 6;Note=ABA receptor%2C Drought tolerance;Transcript_evidence=AK108414;ORF_evidence=Q10MS2;InterPro=START-like domain superfamily (IPR023393),Polyketide cyclase/dehydrase (IPR019587);NIAS_FLcDNA=002-142-H05;Manual Curation=November 2%2C 2020;Literature_PMID=33130892;Oryzabase=17872;Expression=AK108414;TENOR=Os03t0297600-01;KEGG=Os03t0297600-01
Chr03	irgsp1_rep	five_prime_UTR	10419738	10419833	.	-	.	Parent=Os03t0297600-01
Chr03	irgsp1_rep	CDS	10419048	10419737	.	-	0	Parent=Os03t0297600-01
Chr03	irgsp1_rep	three_prime_UTR	10418661	10419047	.	-	.	Parent=Os03t0297600-01
Chr03	irgsp1_rep	mRNA	10428927	10433729	.	+	.	ID=Os03t0297700-01;Name=Os03t0297700-01;Locus_id=Os03g0297700;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK120200 (DDBJ%2C Best hit);ORF_evidence=XP_002458917.1 (RefSeq);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J013037G15;TENOR=Os03t0297700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	10428927	10429235	.	+	.	Parent=Os03t0297700-01
Chr03	irgsp1_rep	five_prime_UTR	10429940	10430064	.	+	.	Parent=Os03t0297700-01
Chr03	irgsp1_rep	CDS	10430065	10430073	.	+	0	Parent=Os03t0297700-01
Chr03	irgsp1_rep	CDS	10431012	10431377	.	+	0	Parent=Os03t0297700-01
Chr03	irgsp1_rep	CDS	10433210	10433614	.	+	0	Parent=Os03t0297700-01
Chr03	irgsp1_rep	three_prime_UTR	10433615	10433729	.	+	.	Parent=Os03t0297700-01
Chr03	irgsp1_rep	mRNA	10438693	10440452	.	+	.	ID=Os03t0297800-01;Name=Os03t0297800-01;Locus_id=Os03g0297800;Note=Similar to Leucine Rich Repeat family protein%2C expressed.;Transcript_evidence=AK107121 (DDBJ%2C Best hit);ORF_evidence=Q10MS0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=002-124-B05;TENOR=Os03t0297800-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	10438693	10438694	.	+	.	Parent=Os03t0297800-01
Chr03	irgsp1_rep	CDS	10438695	10439415	.	+	0	Parent=Os03t0297800-01
Chr03	irgsp1_rep	CDS	10439525	10440198	.	+	2	Parent=Os03t0297800-01
Chr03	irgsp1_rep	three_prime_UTR	10440199	10440452	.	+	.	Parent=Os03t0297800-01
Chr03	irgsp1_rep	mRNA	10437835	10440086	.	-	.	ID=Os03t0297850-00;Name=Os03t0297850-00;Locus_id=Os03g0297850;Note=Hypothetical protein.;Transcript_evidence=tplb0052f20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0297850-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	10439569	10440086	.	-	.	Parent=Os03t0297850-00
Chr03	irgsp1_rep	five_prime_UTR	10439210	10439452	.	-	.	Parent=Os03t0297850-00
Chr03	irgsp1_rep	CDS	10439027	10439209	.	-	0	Parent=Os03t0297850-00
Chr03	irgsp1_rep	CDS	10437835	10438112	.	-	0	Parent=Os03t0297850-00
Chr03	irgsp1_rep	mRNA	10443193	10445991	.	+	.	ID=Os03t0297900-00;Name=Os03t0297900-00;Locus_id=Os03g0297900;CGSNL Gene Symbol=LAC12;CGSNL Gene Name=LACCASE 12;Oryzabase Gene Symbol Synonym(s)=OsLAC12;Oryzabase Gene Name Synonym(s)=laccase 12;Note=Similar to laccase 90c.;Transcript_evidence=BT054190 (DDBJ);ORF_evidence=Q941X2 (UniProt);GO=Biological Process: lignin catabolic process (GO:0046274),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: apoplast (GO:0048046),Molecular Function: copper ion binding (GO:0005507),Molecular Function: laccase activity (GO:0008471),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Multicopper oxidase%2C type 1 (IPR001117),Cupredoxin (IPR008972),Multicopper oxidase%2C type 3 (IPR011707),Laccase (IPR017761);Oryzabase=18563;TENOR=Os03t0297900-00;KEGG=Os03t0297900-00
Chr03	irgsp1_rep	five_prime_UTR	10443193	10443221	.	+	.	Parent=Os03t0297900-00
Chr03	irgsp1_rep	CDS	10443222	10443344	.	+	0	Parent=Os03t0297900-00
Chr03	irgsp1_rep	CDS	10443452	10443848	.	+	0	Parent=Os03t0297900-00
Chr03	irgsp1_rep	CDS	10443954	10444082	.	+	2	Parent=Os03t0297900-00
Chr03	irgsp1_rep	CDS	10444596	10444982	.	+	2	Parent=Os03t0297900-00
Chr03	irgsp1_rep	CDS	10445054	10445958	.	+	2	Parent=Os03t0297900-00
Chr03	irgsp1_rep	three_prime_UTR	10445959	10445991	.	+	.	Parent=Os03t0297900-00
Chr03	irgsp1_rep	mRNA	10452240	10453026	.	+	.	ID=Os03t0298100-00;Name=Os03t0298100-00;Locus_id=Os03g0298100;Note=Conserved hypothetical protein.;Transcript_evidence=AK369609 (DDBJ);ORF_evidence=NP_001173382.1 (RefSeq);TENOR=Os03t0298100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	10452240	10452250	.	+	.	Parent=Os03t0298100-00
Chr03	irgsp1_rep	CDS	10452251	10452787	.	+	0	Parent=Os03t0298100-00
Chr03	irgsp1_rep	three_prime_UTR	10452788	10453026	.	+	.	Parent=Os03t0298100-00
Chr03	irgsp1_rep	mRNA	10456984	10459641	.	+	.	ID=Os03t0298300-01;Name=Os03t0298300-01;Locus_id=Os03g0298300;Note=Uncharacterised protein family UPF0497%2C trans-membrane plant domain containing protein.;Transcript_evidence=AK061180 (DDBJ%2C Best hit);ORF_evidence=A2XFN2 (UniProt);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);NIAS_FLcDNA=006-209-D04;Expression=AK061180;TENOR=Os03t0298300-01;KEGG=Os03t0298300-01
Chr03	irgsp1_rep	five_prime_UTR	10456984	10457116	.	+	.	Parent=Os03t0298300-01
Chr03	irgsp1_rep	CDS	10457117	10457409	.	+	0	Parent=Os03t0298300-01
Chr03	irgsp1_rep	CDS	10457517	10457652	.	+	1	Parent=Os03t0298300-01
Chr03	irgsp1_rep	CDS	10458989	10459180	.	+	0	Parent=Os03t0298300-01
Chr03	irgsp1_rep	three_prime_UTR	10459181	10459641	.	+	.	Parent=Os03t0298300-01
Chr03	irgsp1_rep	mRNA	10457009	10459575	.	+	.	ID=Os03t0298300-02;Name=Os03t0298300-02;Locus_id=Os03g0298300;Note=Uncharacterised protein family UPF0497%2C trans-membrane plant domain containing protein.;Transcript_evidence=AK099089 (DDBJ%2C Best hit);ORF_evidence=A2XFN2 (UniProt);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);NIAS_FLcDNA=J023013A03;Expression=AK099089;TENOR=Os03t0298300-02;KEGG=Os03t0298300-02
Chr03	irgsp1_rep	five_prime_UTR	10457009	10457116	.	+	.	Parent=Os03t0298300-02
Chr03	irgsp1_rep	CDS	10457117	10457409	.	+	0	Parent=Os03t0298300-02
Chr03	irgsp1_rep	CDS	10457517	10457652	.	+	1	Parent=Os03t0298300-02
Chr03	irgsp1_rep	CDS	10458989	10459180	.	+	0	Parent=Os03t0298300-02
Chr03	irgsp1_rep	three_prime_UTR	10459181	10459575	.	+	.	Parent=Os03t0298300-02
Chr03	irgsp1_rep	mRNA	10462452	10466088	.	+	.	ID=Os03t0298400-01;Name=Os03t0298400-01;Locus_id=Os03g0298400;CGSNL Gene Symbol=RPT2B;CGSNL Gene Name=19S REGULATORY PARTICLE ATPASE SUBUNIT 2B;Oryzabase Gene Symbol Synonym(s)=OsRpt2b%2C Rpt2b;Oryzabase Gene Name Synonym(s)=19S regulatory particle ATPase subunit 2b%2C RP triple A-ATPase 2b;Note=Similar to 26S proteasome subunit 4-like protein (26S proteasome subunit AtRPT2a).;Transcript_evidence=AK069811 (DDBJ%2C Best hit);ORF_evidence=P46466 (UniProt);GO=Biological Process: protein catabolic process (GO:0030163),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960),26S proteasome subunit P45 (IPR005937);NIAS_FLcDNA=J023030D05;Oryzabase=20555;Expression=AK069811;TENOR=Os03t0298400-01;KEGG=Os03t0298400-01
Chr03	irgsp1_rep	five_prime_UTR	10462452	10462528	.	+	.	Parent=Os03t0298400-01
Chr03	irgsp1_rep	CDS	10462529	10463023	.	+	0	Parent=Os03t0298400-01
Chr03	irgsp1_rep	CDS	10464476	10464721	.	+	0	Parent=Os03t0298400-01
Chr03	irgsp1_rep	CDS	10464934	10465103	.	+	0	Parent=Os03t0298400-01
Chr03	irgsp1_rep	CDS	10465237	10465453	.	+	1	Parent=Os03t0298400-01
Chr03	irgsp1_rep	CDS	10465529	10465669	.	+	0	Parent=Os03t0298400-01
Chr03	irgsp1_rep	CDS	10465857	10465940	.	+	0	Parent=Os03t0298400-01
Chr03	irgsp1_rep	three_prime_UTR	10465941	10466088	.	+	.	Parent=Os03t0298400-01
Chr03	irgsp1_rep	mRNA	10465237	10466149	.	+	.	ID=Os03t0298400-02;Name=Os03t0298400-02;Locus_id=Os03g0298400;CGSNL Gene Symbol=RPT2B;CGSNL Gene Name=19S REGULATORY PARTICLE ATPASE SUBUNIT 2B;Oryzabase Gene Symbol Synonym(s)=OsRpt2b%2C Rpt2b;Oryzabase Gene Name Synonym(s)=19S regulatory particle ATPase subunit 2b%2C RP triple A-ATPase 2b;Note=Similar to 26S protease regulatory subunit 4 homolog.;Transcript_evidence=AK058779 (DDBJ%2C Best hit);ORF_evidence=P46466 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);NIAS_FLcDNA=001-002-C01;Oryzabase=20555;Expression=AK058779;TENOR=Os03t0298400-02;KEGG=Os03t0298400-02
Chr03	irgsp1_rep	five_prime_UTR	10465237	10465237	.	+	.	Parent=Os03t0298400-02
Chr03	irgsp1_rep	CDS	10465238	10465453	.	+	0	Parent=Os03t0298400-02
Chr03	irgsp1_rep	CDS	10465529	10465669	.	+	0	Parent=Os03t0298400-02
Chr03	irgsp1_rep	CDS	10465857	10465940	.	+	0	Parent=Os03t0298400-02
Chr03	irgsp1_rep	three_prime_UTR	10465941	10466149	.	+	.	Parent=Os03t0298400-02
Chr03	irgsp1_rep	mRNA	10462470	10466136	.	-	.	ID=Os03t0298501-00;Name=Os03t0298501-00;Locus_id=Os03g0298501;Note=Non-protein coding transcript.;Transcript_evidence=tplb0035i09 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os03t0298501-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	exon	10465862	10466136	.	-	.	Parent=Os03t0298501-00
Chr03	irgsp1_rep	exon	10465533	10465673	.	-	.	Parent=Os03t0298501-00
Chr03	irgsp1_rep	exon	10465235	10465456	.	-	.	Parent=Os03t0298501-00
Chr03	irgsp1_rep	exon	10464951	10465101	.	-	.	Parent=Os03t0298501-00
Chr03	irgsp1_rep	exon	10464456	10464735	.	-	.	Parent=Os03t0298501-00
Chr03	irgsp1_rep	exon	10462470	10463008	.	-	.	Parent=Os03t0298501-00
Chr03	irgsp1_rep	mRNA	10467372	10469878	.	-	.	ID=Os03t0298600-01;Name=Os03t0298600-01;Locus_id=Os03g0298600;Note=Sel1-like domain containing protein.;Transcript_evidence=AK066846 (DDBJ%2C Best hit);ORF_evidence=B9F7V3 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Sel1-like (IPR006597),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013088A03;Expression=AK066846;TENOR=Os03t0298600-01;KEGG=Os03t0298600-01
Chr03	irgsp1_rep	five_prime_UTR	10469834	10469878	.	-	.	Parent=Os03t0298600-01
Chr03	irgsp1_rep	CDS	10469465	10469833	.	-	0	Parent=Os03t0298600-01
Chr03	irgsp1_rep	CDS	10468465	10468534	.	-	0	Parent=Os03t0298600-01
Chr03	irgsp1_rep	CDS	10468161	10468231	.	-	2	Parent=Os03t0298600-01
Chr03	irgsp1_rep	CDS	10467620	10467622	.	-	0	Parent=Os03t0298600-01
Chr03	irgsp1_rep	three_prime_UTR	10467372	10467619	.	-	.	Parent=Os03t0298600-01
Chr03	irgsp1_rep	mRNA	10470676	10477048	.	-	.	ID=Os03t0298700-01;Name=Os03t0298700-01;Locus_id=Os03g0298700;Oryzabase Gene Symbol Synonym(s)=OsSCAR2%2C SCAR2%2C OsSCAR3%2C SCAR3;Oryzabase Gene Name Synonym(s)=Suppressor of cAMP Receptor-Like Protein 2%2C SCAR-like Protein 2%2C suppressor of cAMP receptor 3;Note=Hypothetical conserved gene.;Transcript_evidence=AK243032 (DDBJ%2C Best hit),AK289171 (DDBJ%2C Best hit);ORF_evidence=B8AM20 (UniProt);NIAS_FLcDNA=J100005E14,J100014K02;Oryzabase=19952;TENOR=Os03t0298700-01;KEGG=Os03t0298700-01
Chr03	irgsp1_rep	five_prime_UTR	10476783	10477048	.	-	.	Parent=Os03t0298700-01
Chr03	irgsp1_rep	CDS	10476628	10476782	.	-	0	Parent=Os03t0298700-01
Chr03	irgsp1_rep	CDS	10475465	10475625	.	-	1	Parent=Os03t0298700-01
Chr03	irgsp1_rep	CDS	10475206	10475329	.	-	2	Parent=Os03t0298700-01
Chr03	irgsp1_rep	CDS	10474971	10475100	.	-	1	Parent=Os03t0298700-01
Chr03	irgsp1_rep	CDS	10474804	10474871	.	-	0	Parent=Os03t0298700-01
Chr03	irgsp1_rep	CDS	10471679	10474718	.	-	1	Parent=Os03t0298700-01
Chr03	irgsp1_rep	CDS	10471508	10471591	.	-	0	Parent=Os03t0298700-01
Chr03	irgsp1_rep	CDS	10471318	10471425	.	-	0	Parent=Os03t0298700-01
Chr03	irgsp1_rep	CDS	10471167	10471208	.	-	0	Parent=Os03t0298700-01
Chr03	irgsp1_rep	three_prime_UTR	10470676	10471166	.	-	.	Parent=Os03t0298700-01
Chr03	irgsp1_rep	mRNA	10478466	10482571	.	-	.	ID=Os03t0298800-01;Name=Os03t0298800-01;Locus_id=Os03g0298800;Note=Similar to Spliceosomal protein.;Transcript_evidence=AK103337 (DDBJ%2C Best hit);ORF_evidence=Q10MR1 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033126A09;Expression=AK103337;TENOR=Os03t0298800-01;KEGG=Os03t0298800-01
Chr03	irgsp1_rep	five_prime_UTR	10482513	10482571	.	-	.	Parent=Os03t0298800-01
Chr03	irgsp1_rep	CDS	10482440	10482512	.	-	0	Parent=Os03t0298800-01
Chr03	irgsp1_rep	CDS	10481765	10481937	.	-	2	Parent=Os03t0298800-01
Chr03	irgsp1_rep	CDS	10480970	10481063	.	-	0	Parent=Os03t0298800-01
Chr03	irgsp1_rep	CDS	10479731	10479804	.	-	2	Parent=Os03t0298800-01
Chr03	irgsp1_rep	CDS	10478626	10478910	.	-	0	Parent=Os03t0298800-01
Chr03	irgsp1_rep	three_prime_UTR	10478466	10478625	.	-	.	Parent=Os03t0298800-01
Chr03	irgsp1_rep	mRNA	10478626	10482567	.	+	.	ID=Os03t0298850-00;Name=Os03t0298850-00;Locus_id=Os03g0298850;Note=Non-protein coding transcript.;Transcript_evidence=BT019068 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0298850-00
Chr03	irgsp1_rep	exon	10478626	10478894	.	+	.	Parent=Os03t0298850-00
Chr03	irgsp1_rep	exon	10479719	10479802	.	+	.	Parent=Os03t0298850-00
Chr03	irgsp1_rep	exon	10480968	10481056	.	+	.	Parent=Os03t0298850-00
Chr03	irgsp1_rep	exon	10481752	10481922	.	+	.	Parent=Os03t0298850-00
Chr03	irgsp1_rep	exon	10482429	10482567	.	+	.	Parent=Os03t0298850-00
Chr03	irgsp1_rep	mRNA	10483746	10485130	.	-	.	ID=Os03t0298900-01;Name=Os03t0298900-01;Locus_id=Os03g0298900;Note=Similar to Peptidase%2C M50 family.;Transcript_evidence=AK060996 (DDBJ%2C Best hit);ORF_evidence=B6UET0 (UniProt);NIAS_FLcDNA=006-203-E08;TENOR=Os03t0298900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	10484513	10485130	.	-	.	Parent=Os03t0298900-01
Chr03	irgsp1_rep	CDS	10484207	10484512	.	-	0	Parent=Os03t0298900-01
Chr03	irgsp1_rep	three_prime_UTR	10483746	10484206	.	-	.	Parent=Os03t0298900-01
Chr03	irgsp1_rep	mRNA	10484222	10485047	.	+	.	ID=Os03t0299050-00;Name=Os03t0299050-00;Locus_id=Os03g0299050;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0019a19 (Wheat FLcDNA);ORF_evidence=NP_001131355.1 (RefSeq);TENOR=Os03t0299050-00
Chr03	irgsp1_rep	five_prime_UTR	10484222	10484314	.	+	.	Parent=Os03t0299050-00
Chr03	irgsp1_rep	CDS	10484315	10484372	.	+	0	Parent=Os03t0299050-00
Chr03	irgsp1_rep	CDS	10484505	10484591	.	+	2	Parent=Os03t0299050-00
Chr03	irgsp1_rep	CDS	10484833	10485047	.	+	2	Parent=Os03t0299050-00
Chr03	irgsp1_rep	mRNA	10502015	10503291	.	+	.	ID=Os03t0299200-01;Name=Os03t0299200-01;Locus_id=Os03g0299200;Note=Similar to Alcohol dehydrogenase (Fragment).;Transcript_evidence=AK100767 (DDBJ%2C Best hit);ORF_evidence=P93795 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Polyketide synthase/Fatty acid synthase%2C KR (IPR020842);NIAS_FLcDNA=J023119K22;Expression=AK100767;TENOR=Os03t0299200-01;KEGG=Os03t0299200-01
Chr03	irgsp1_rep	five_prime_UTR	10502015	10502048	.	+	.	Parent=Os03t0299200-01
Chr03	irgsp1_rep	CDS	10502049	10502200	.	+	0	Parent=Os03t0299200-01
Chr03	irgsp1_rep	CDS	10502304	10503153	.	+	1	Parent=Os03t0299200-01
Chr03	irgsp1_rep	three_prime_UTR	10503154	10503291	.	+	.	Parent=Os03t0299200-01
Chr03	irgsp1_rep	mRNA	10502301	10503064	.	-	.	ID=Os03t0299400-00;Name=Os03t0299400-00;Locus_id=Os03g0299400;Note=Hypothetical protein.;Transcript_evidence=EU954997 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0299400-00
Chr03	irgsp1_rep	five_prime_UTR	10502968	10503064	.	-	.	Parent=Os03t0299400-00
Chr03	irgsp1_rep	five_prime_UTR	10502715	10502909	.	-	.	Parent=Os03t0299400-00
Chr03	irgsp1_rep	CDS	10502301	10502714	.	-	0	Parent=Os03t0299400-00
Chr03	irgsp1_rep	mRNA	10517166	10518361	.	-	.	ID=Os03t0299600-01;Name=Os03t0299600-01;Locus_id=Os03g0299600;Note=Wound-induced protein%2C Wun1 domain containing protein.;Transcript_evidence=AK068151 (DDBJ%2C Best hit);ORF_evidence=XP_002468012.1 (RefSeq);InterPro=Wound-induced protein%2C Wun1 (IPR009798);NIAS_FLcDNA=J013132L05;Expression=AK068151;TENOR=Os03t0299600-01;KEGG=Os03t0299600-01
Chr03	irgsp1_rep	five_prime_UTR	10518262	10518361	.	-	.	Parent=Os03t0299600-01
Chr03	irgsp1_rep	CDS	10517575	10518261	.	-	0	Parent=Os03t0299600-01
Chr03	irgsp1_rep	three_prime_UTR	10517166	10517574	.	-	.	Parent=Os03t0299600-01
Chr03	irgsp1_rep	mRNA	10518913	10520192	.	+	.	ID=Os03t0299700-01;Name=Os03t0299700-01;Locus_id=Os03g0299700;Note=Conserved hypothetical protein.;Transcript_evidence=AK241260 (DDBJ%2C Best hit);ORF_evidence=B9F7V7 (UniProt);NIAS_FLcDNA=J065130P18;Oryzabase=20001;TENOR=Os03t0299700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	10518913	10519145	.	+	.	Parent=Os03t0299700-01
Chr03	irgsp1_rep	CDS	10519146	10519859	.	+	0	Parent=Os03t0299700-01
Chr03	irgsp1_rep	three_prime_UTR	10519860	10520192	.	+	.	Parent=Os03t0299700-01
Chr03	irgsp1_rep	mRNA	10526047	10531373	.	-	.	ID=Os03t0299800-01;Name=Os03t0299800-01;Locus_id=Os03g0299800;Note=Protein of unknown function Cys-rich family protein.;Transcript_evidence=AK103635 (DDBJ%2C Best hit);ORF_evidence=B8AM23 (UniProt);InterPro=Uncharacterised protein family Cys-rich (IPR006461),Protein of unknown function DUF2985 (IPR021369);NIAS_FLcDNA=J033134D12;TENOR=Os03t0299800-01
Chr03	irgsp1_rep	five_prime_UTR	10531024	10531373	.	-	.	Parent=Os03t0299800-01
Chr03	irgsp1_rep	CDS	10531003	10531023	.	-	0	Parent=Os03t0299800-01
Chr03	irgsp1_rep	CDS	10526230	10528041	.	-	0	Parent=Os03t0299800-01
Chr03	irgsp1_rep	three_prime_UTR	10526047	10526229	.	-	.	Parent=Os03t0299800-01
Chr03	irgsp1_rep	mRNA	10525760	10527995	.	-	.	ID=Os03t0299800-02;Name=Os03t0299800-02;Locus_id=Os03g0299800;Note=Hypothetical conserved gene.;Transcript_evidence=AK100929 (DDBJ%2C Best hit);ORF_evidence=B8AM23 (UniProt);InterPro=Uncharacterised protein family Cys-rich (IPR006461),Protein of unknown function DUF2985 (IPR021369);NIAS_FLcDNA=J023135J01;Expression=AK100929;TENOR=Os03t0299800-02;KEGG=Os03t0299800-02
Chr03	irgsp1_rep	five_prime_UTR	10527994	10527995	.	-	.	Parent=Os03t0299800-02
Chr03	irgsp1_rep	CDS	10526230	10527993	.	-	0	Parent=Os03t0299800-02
Chr03	irgsp1_rep	three_prime_UTR	10525760	10526229	.	-	.	Parent=Os03t0299800-02
Chr03	irgsp1_rep	mRNA	10526047	10531296	.	-	.	ID=Os03t0299800-03;Name=Os03t0299800-03;Locus_id=Os03g0299800;Note=Protein of unknown function Cys-rich family protein.;Transcript_evidence=AK064332 (DDBJ%2C Best hit);ORF_evidence=B8AM23 (UniProt);InterPro=Uncharacterised protein family Cys-rich (IPR006461),Protein of unknown function DUF2985 (IPR021369);NIAS_FLcDNA=002-107-G03;TENOR=Os03t0299800-03
Chr03	irgsp1_rep	five_prime_UTR	10531024	10531296	.	-	.	Parent=Os03t0299800-03
Chr03	irgsp1_rep	CDS	10531003	10531023	.	-	0	Parent=Os03t0299800-03
Chr03	irgsp1_rep	CDS	10526230	10528041	.	-	0	Parent=Os03t0299800-03
Chr03	irgsp1_rep	three_prime_UTR	10526047	10526229	.	-	.	Parent=Os03t0299800-03
Chr03	irgsp1_rep	mRNA	10542880	10546261	.	+	.	ID=Os03t0299900-01;Name=Os03t0299900-01;Locus_id=Os03g0299900;Oryzabase Gene Symbol Synonym(s)=OsAGD2;Oryzabase Gene Name Synonym(s)=aberrant growth and death2;Note=Similar to Plastid aminotransferase (Fragment).;Transcript_evidence=AK069075 (DDBJ%2C Best hit);ORF_evidence=NP_001149818.1 (RefSeq);GO=Biological Process: biosynthetic process (GO:0009058),Biological Process: lysine biosynthetic process via diaminopimelate (GO:0009089),Molecular Function: catalytic activity (GO:0003824),Molecular Function: L%2CL-diaminopimelate aminotransferase activity (GO:0010285),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferase%2C class I/classII (IPR004839),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424),Diaminopimelate aminotransferase%2C DapL%2C plant/Chlamydia-type (IPR019942);NIAS_FLcDNA=J023007K10;Oryzabase=13986;Expression=AK069075;TENOR=Os03t0299900-01;KEGG=Os03t0299900-01 (EC:2.6.1.83)
Chr03	irgsp1_rep	five_prime_UTR	10542880	10542926	.	+	.	Parent=Os03t0299900-01
Chr03	irgsp1_rep	CDS	10542927	10543006	.	+	0	Parent=Os03t0299900-01
Chr03	irgsp1_rep	CDS	10543103	10543191	.	+	1	Parent=Os03t0299900-01
Chr03	irgsp1_rep	CDS	10543446	10543513	.	+	2	Parent=Os03t0299900-01
Chr03	irgsp1_rep	CDS	10543624	10543740	.	+	0	Parent=Os03t0299900-01
Chr03	irgsp1_rep	CDS	10544039	10544101	.	+	0	Parent=Os03t0299900-01
Chr03	irgsp1_rep	CDS	10544509	10544613	.	+	0	Parent=Os03t0299900-01
Chr03	irgsp1_rep	CDS	10544691	10544741	.	+	0	Parent=Os03t0299900-01
Chr03	irgsp1_rep	CDS	10544916	10545236	.	+	0	Parent=Os03t0299900-01
Chr03	irgsp1_rep	CDS	10545337	10545543	.	+	0	Parent=Os03t0299900-01
Chr03	irgsp1_rep	CDS	10545622	10545915	.	+	0	Parent=Os03t0299900-01
Chr03	irgsp1_rep	three_prime_UTR	10545916	10546261	.	+	.	Parent=Os03t0299900-01
Chr03	irgsp1_rep	mRNA	10547471	10548714	.	-	.	ID=Os03t0300000-01;Name=Os03t0300000-01;Locus_id=Os03g0300000;Oryzabase Gene Symbol Synonym(s)=OsXXT1%2C SRH2;Oryzabase Gene Name Synonym(s)=xyloglucan 6-xylosytransferase 1%2C short root hair2;Note=Similar to Xyloglucan 6-xylosyltransferase (EC 2.4.2.39) (AtXT1).;Transcript_evidence=AK060863 (DDBJ%2C Best hit);ORF_evidence=NP_001150077.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=Galactosyl transferase (IPR008630);NIAS_FLcDNA=001-034-G06;Oryzabase=15246;Expression=AK060863;TENOR=Os03t0300000-01;KEGG=Os03t0300000-01 (EC:2.4.2.39)
Chr03	irgsp1_rep	CDS	10547668	10548714	.	-	0	Parent=Os03t0300000-01
Chr03	irgsp1_rep	three_prime_UTR	10547471	10547667	.	-	.	Parent=Os03t0300000-01
Chr03	irgsp1_rep	mRNA	10547473	10548669	.	-	.	ID=Os03t0300000-02;Name=Os03t0300000-02;Locus_id=Os03g0300000;Oryzabase Gene Symbol Synonym(s)=OsXXT1%2C SRH2;Oryzabase Gene Name Synonym(s)=xyloglucan 6-xylosytransferase 1%2C short root hair2;Note=Similar to glycosyltransferase 5.;Transcript_evidence=AK098859 (DDBJ%2C Best hit);ORF_evidence=NP_001151451.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=Galactosyl transferase (IPR008630);NIAS_FLcDNA=J013000N01;Oryzabase=15246;Expression=AK098859;TENOR=Os03t0300000-02;KEGG=Os03t0300000-02 (EC:2.4.2.39)
Chr03	irgsp1_rep	CDS	10547668	10548669	.	-	0	Parent=Os03t0300000-02
Chr03	irgsp1_rep	three_prime_UTR	10547473	10547667	.	-	.	Parent=Os03t0300000-02
Chr03	irgsp1_rep	mRNA	10547697	10550188	.	+	.	ID=Os03t0300100-01;Name=Os03t0300100-01;Locus_id=Os03g0300100;Note=Hypothetical protein.;Transcript_evidence=AK109538 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-119-D08;Expression=AK109538;TENOR=Os03t0300100-01;KEGG=Os03t0300100-01
Chr03	irgsp1_rep	five_prime_UTR	10547697	10547952	.	+	.	Parent=Os03t0300100-01
Chr03	irgsp1_rep	CDS	10547953	10549512	.	+	0	Parent=Os03t0300100-01
Chr03	irgsp1_rep	three_prime_UTR	10549513	10550188	.	+	.	Parent=Os03t0300100-01
Chr03	irgsp1_rep	mRNA	10551935	10556107	.	-	.	ID=Os03t0300200-01;Name=Os03t0300200-01;Locus_id=Os03g0300200;Note=Similar to Ubiquitin-specific protease 16.;Transcript_evidence=AK102070 (DDBJ%2C Best hit);ORF_evidence=NP_001149515.1 (RefSeq);GO=Cellular Component: cytoplasm (GO:0005737),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C MYND-type (IPR002893),Programmed cell death protein 2%2C C-terminal (IPR007320);NIAS_FLcDNA=J033082G07;Expression=AK102070;TENOR=Os03t0300200-01;KEGG=Os03t0300200-01
Chr03	irgsp1_rep	five_prime_UTR	10556066	10556107	.	-	.	Parent=Os03t0300200-01
Chr03	irgsp1_rep	CDS	10555817	10556065	.	-	0	Parent=Os03t0300200-01
Chr03	irgsp1_rep	CDS	10555628	10555711	.	-	0	Parent=Os03t0300200-01
Chr03	irgsp1_rep	CDS	10555406	10555539	.	-	0	Parent=Os03t0300200-01
Chr03	irgsp1_rep	CDS	10555236	10555333	.	-	1	Parent=Os03t0300200-01
Chr03	irgsp1_rep	CDS	10554592	10554680	.	-	2	Parent=Os03t0300200-01
Chr03	irgsp1_rep	CDS	10554411	10554504	.	-	0	Parent=Os03t0300200-01
Chr03	irgsp1_rep	CDS	10554177	10554334	.	-	2	Parent=Os03t0300200-01
Chr03	irgsp1_rep	CDS	10554016	10554086	.	-	0	Parent=Os03t0300200-01
Chr03	irgsp1_rep	CDS	10553716	10553830	.	-	1	Parent=Os03t0300200-01
Chr03	irgsp1_rep	CDS	10552967	10553134	.	-	0	Parent=Os03t0300200-01
Chr03	irgsp1_rep	three_prime_UTR	10552914	10552966	.	-	.	Parent=Os03t0300200-01
Chr03	irgsp1_rep	three_prime_UTR	10551935	10552246	.	-	.	Parent=Os03t0300200-01
Chr03	irgsp1_rep	mRNA	10556232	10561713	.	+	.	ID=Os03t0300300-01;Name=Os03t0300300-01;Locus_id=Os03g0300300;Oryzabase Gene Symbol Synonym(s)=OsWD40-68;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK099693 (DDBJ%2C Best hit);ORF_evidence=B8AM26 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),Small-subunit processome%2C Utp12 (IPR007148),Quinonprotein alcohol dehydrogenase-like (IPR011047),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J013074C22;Oryzabase=10749;Expression=AK099693;TENOR=Os03t0300300-01;KEGG=Os03t0300300-01
Chr03	irgsp1_rep	five_prime_UTR	10556232	10556317	.	+	.	Parent=Os03t0300300-01
Chr03	irgsp1_rep	CDS	10556318	10556411	.	+	0	Parent=Os03t0300300-01
Chr03	irgsp1_rep	CDS	10556518	10556669	.	+	2	Parent=Os03t0300300-01
Chr03	irgsp1_rep	CDS	10556757	10556872	.	+	0	Parent=Os03t0300300-01
Chr03	irgsp1_rep	CDS	10557044	10557198	.	+	1	Parent=Os03t0300300-01
Chr03	irgsp1_rep	CDS	10557942	10558030	.	+	2	Parent=Os03t0300300-01
Chr03	irgsp1_rep	CDS	10558160	10558694	.	+	0	Parent=Os03t0300300-01
Chr03	irgsp1_rep	CDS	10558823	10558990	.	+	2	Parent=Os03t0300300-01
Chr03	irgsp1_rep	CDS	10559642	10559820	.	+	2	Parent=Os03t0300300-01
Chr03	irgsp1_rep	CDS	10559942	10560021	.	+	0	Parent=Os03t0300300-01
Chr03	irgsp1_rep	CDS	10560119	10560227	.	+	1	Parent=Os03t0300300-01
Chr03	irgsp1_rep	CDS	10561243	10561317	.	+	0	Parent=Os03t0300300-01
Chr03	irgsp1_rep	CDS	10561413	10561574	.	+	0	Parent=Os03t0300300-01
Chr03	irgsp1_rep	three_prime_UTR	10561575	10561713	.	+	.	Parent=Os03t0300300-01
Chr03	irgsp1_rep	mRNA	10562231	10563277	.	+	.	ID=Os03t0300400-01;Name=Os03t0300400-01;Locus_id=Os03g0300400;CGSNL Gene Symbol=JIOSPR10;CGSNL Gene Name=JASMONATE INDUCIBLE PATHOGENESIS-RELATED CLASS 10 PROTEIN;Oryzabase Gene Symbol Synonym(s)=JIOsPR10%2C OsPR10%2C PR10%2C OsJiPR10%2C JiPR10;Oryzabase Gene Name Synonym(s)=jasmonate inducible pathogenesis-related class 10 protein;Note=Pathogen-related protein (JIOsPR10).;Transcript_evidence=AK121376 (DDBJ%2C Best hit);ORF_evidence=Q945E9 (UniProt);GO=Biological Process: defense response (GO:0006952),Biological Process: response to biotic stimulus (GO:0009607);InterPro=Bet v I allergen (IPR000916),START-like domain (IPR023393);NIAS_FLcDNA=J023127E15;Oryzabase=6059;Expression=AK121376;TENOR=Os03t0300400-01;KEGG=Os03t0300400-01
Chr03	irgsp1_rep	five_prime_UTR	10562231	10562323	.	+	.	Parent=Os03t0300400-01
Chr03	irgsp1_rep	CDS	10562324	10562510	.	+	0	Parent=Os03t0300400-01
Chr03	irgsp1_rep	CDS	10562679	10562974	.	+	2	Parent=Os03t0300400-01
Chr03	irgsp1_rep	three_prime_UTR	10562975	10563277	.	+	.	Parent=Os03t0300400-01
Chr03	irgsp1_rep	mRNA	10564710	10566806	.	-	.	ID=Os03t0300500-01;Name=Os03t0300500-01;Locus_id=Os03g0300500;CGSNL Gene Symbol=PME10;CGSNL Gene Name=PECTIN METHYLESTERASE 10;Oryzabase Gene Symbol Synonym(s)=OsPME10;Oryzabase Gene Name Synonym(s)=pectin methylesterase 10;Note=Similar to Pectin methylesterase 6 (Fragment).;Transcript_evidence=AK070513 (DDBJ%2C Best hit);ORF_evidence=A2XFP7 (UniProt);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectinesterase inhibitor (IPR006501),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),Pectinesterase%2C active site (IPR018040);NIAS_FLcDNA=J023057H15;Oryzabase=13174;Expression=AK070513;TENOR=Os03t0300500-01;KEGG=Os03t0300500-01
Chr03	irgsp1_rep	five_prime_UTR	10566694	10566806	.	-	.	Parent=Os03t0300500-01
Chr03	irgsp1_rep	CDS	10564996	10566693	.	-	0	Parent=Os03t0300500-01
Chr03	irgsp1_rep	three_prime_UTR	10564710	10564995	.	-	.	Parent=Os03t0300500-01
Chr03	irgsp1_rep	mRNA	10571694	10573269	.	-	.	ID=Os03t0300600-01;Name=Os03t0300600-01;Locus_id=Os03g0300600;Oryzabase Gene Symbol Synonym(s)=OsDjC28;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C28;Note=Similar to Chaperone protein dnaJ.;Transcript_evidence=AK066250 (DDBJ%2C Best hit);ORF_evidence=B6U761 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=J013056D15;Oryzabase=12185;TENOR=Os03t0300600-01
Chr03	irgsp1_rep	five_prime_UTR	10573076	10573269	.	-	.	Parent=Os03t0300600-01
Chr03	irgsp1_rep	CDS	10572935	10573075	.	-	0	Parent=Os03t0300600-01
Chr03	irgsp1_rep	CDS	10572737	10572815	.	-	0	Parent=Os03t0300600-01
Chr03	irgsp1_rep	CDS	10572581	10572651	.	-	2	Parent=Os03t0300600-01
Chr03	irgsp1_rep	CDS	10572380	10572436	.	-	0	Parent=Os03t0300600-01
Chr03	irgsp1_rep	CDS	10572101	10572253	.	-	0	Parent=Os03t0300600-01
Chr03	irgsp1_rep	three_prime_UTR	10571694	10572100	.	-	.	Parent=Os03t0300600-01
Chr03	irgsp1_rep	mRNA	10571721	10573235	.	-	.	ID=Os03t0300600-02;Name=Os03t0300600-02;Locus_id=Os03g0300600;Oryzabase Gene Symbol Synonym(s)=OsDjC28;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C28;Note=Similar to Chaperone protein dnaJ.;Transcript_evidence=AK104186 (DDBJ%2C Best hit),AK069897 (DDBJ%2C Best hit);ORF_evidence=B6U761 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=006-302-E10,J023038C19;Oryzabase=12185;Expression=AK069897;TENOR=Os03t0300600-02;KEGG=Os03t0300600-02;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	10573076	10573235	.	-	.	Parent=Os03t0300600-02
Chr03	irgsp1_rep	CDS	10572935	10573075	.	-	0	Parent=Os03t0300600-02
Chr03	irgsp1_rep	CDS	10572737	10572815	.	-	0	Parent=Os03t0300600-02
Chr03	irgsp1_rep	CDS	10572581	10572651	.	-	2	Parent=Os03t0300600-02
Chr03	irgsp1_rep	CDS	10572380	10572436	.	-	0	Parent=Os03t0300600-02
Chr03	irgsp1_rep	CDS	10572101	10572253	.	-	0	Parent=Os03t0300600-02
Chr03	irgsp1_rep	three_prime_UTR	10571721	10572100	.	-	.	Parent=Os03t0300600-02
Chr03	irgsp1_rep	mRNA	10571711	10573161	.	-	.	ID=Os03t0300600-03;Name=Os03t0300600-03;Locus_id=Os03g0300600;Oryzabase Gene Symbol Synonym(s)=OsDjC28;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C28;Note=Similar to Chaperone protein dnaJ.;Transcript_evidence=AK059801 (DDBJ%2C Best hit);ORF_evidence=B6U761 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=006-204-F12;Oryzabase=12185;TENOR=Os03t0300600-03
Chr03	irgsp1_rep	five_prime_UTR	10573076	10573161	.	-	.	Parent=Os03t0300600-03
Chr03	irgsp1_rep	CDS	10572935	10573075	.	-	0	Parent=Os03t0300600-03
Chr03	irgsp1_rep	CDS	10572737	10572815	.	-	0	Parent=Os03t0300600-03
Chr03	irgsp1_rep	CDS	10572581	10572651	.	-	2	Parent=Os03t0300600-03
Chr03	irgsp1_rep	CDS	10572380	10572436	.	-	0	Parent=Os03t0300600-03
Chr03	irgsp1_rep	CDS	10572101	10572253	.	-	0	Parent=Os03t0300600-03
Chr03	irgsp1_rep	three_prime_UTR	10571711	10572100	.	-	.	Parent=Os03t0300600-03
Chr03	irgsp1_rep	mRNA	10575398	10576700	.	-	.	ID=Os03t0300700-01;Name=Os03t0300700-01;Locus_id=Os03g0300700;Note=Retrotransposon gag protein family protein.;Transcript_evidence=AK071770 (DDBJ%2C Best hit);ORF_evidence=A2XFP9 (UniProt);InterPro=Retrotransposon gag protein (IPR005162);NIAS_FLcDNA=J023112P05;Expression=AK071770;TENOR=Os03t0300700-01;KEGG=Os03t0300700-01
Chr03	irgsp1_rep	five_prime_UTR	10576607	10576700	.	-	.	Parent=Os03t0300700-01
Chr03	irgsp1_rep	five_prime_UTR	10576397	10576423	.	-	.	Parent=Os03t0300700-01
Chr03	irgsp1_rep	CDS	10575662	10576396	.	-	0	Parent=Os03t0300700-01
Chr03	irgsp1_rep	three_prime_UTR	10575398	10575661	.	-	.	Parent=Os03t0300700-01
Chr03	irgsp1_rep	mRNA	10583968	10585770	.	-	.	ID=Os03t0300801-00;Name=Os03t0300801-00;Locus_id=Os03g0300801;Note=Similar to Transferase%2C transferring glycosyl groups.;Transcript_evidence=BT085441 (DDBJ);ORF_evidence=B6TPU8 (UniProt);TENOR=Os03t0300801-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	10583968	10585770	.	-	0	Parent=Os03t0300801-00
Chr03	irgsp1_rep	mRNA	10583988	10585996	.	+	.	ID=Os03t0300900-01;Name=Os03t0300900-01;Locus_id=Os03g0300900;CGSNL Gene Symbol=GATL8;CGSNL Gene Name=GALACTURONOSYLTRANSFERASE-LIKE 8;Oryzabase Gene Symbol Synonym(s)=OsGATL8;Oryzabase Gene Name Synonym(s)=galacturonosyltransferase-like 8;Note=Glycosyl transferase%2C family 8 protein.;Transcript_evidence=AK119594 (DDBJ%2C Best hit);ORF_evidence=B6TPU8 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 8 (IPR002495);NIAS_FLcDNA=002-117-D07;Oryzabase=23249;Expression=AK119594;TENOR=Os03t0300900-01;KEGG=Os03t0300900-01
Chr03	irgsp1_rep	five_prime_UTR	10583988	10584585	.	+	.	Parent=Os03t0300900-01
Chr03	irgsp1_rep	CDS	10584586	10585692	.	+	0	Parent=Os03t0300900-01
Chr03	irgsp1_rep	three_prime_UTR	10585693	10585996	.	+	.	Parent=Os03t0300900-01
Chr03	irgsp1_rep	mRNA	10584160	10586008	.	+	.	ID=Os03t0300900-02;Name=Os03t0300900-02;Locus_id=Os03g0300900;CGSNL Gene Symbol=GATL8;CGSNL Gene Name=GALACTURONOSYLTRANSFERASE-LIKE 8;Oryzabase Gene Symbol Synonym(s)=OsGATL8;Oryzabase Gene Name Synonym(s)=galacturonosyltransferase-like 8;Note=Glycosyl transferase%2C family 8 protein.;Transcript_evidence=AK121731 (DDBJ%2C Best hit);ORF_evidence=B6TPU8 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 8 (IPR002495);NIAS_FLcDNA=J033082H10;Oryzabase=23249;Expression=AK121731;TENOR=Os03t0300900-02;KEGG=Os03t0300900-02
Chr03	irgsp1_rep	five_prime_UTR	10584160	10584585	.	+	.	Parent=Os03t0300900-02
Chr03	irgsp1_rep	CDS	10584586	10585692	.	+	0	Parent=Os03t0300900-02
Chr03	irgsp1_rep	three_prime_UTR	10585693	10586008	.	+	.	Parent=Os03t0300900-02
Chr03	irgsp1_rep	mRNA	10585137	10586011	.	+	.	ID=Os03t0300900-03;Name=Os03t0300900-03;Locus_id=Os03g0300900;CGSNL Gene Symbol=GATL8;CGSNL Gene Name=GALACTURONOSYLTRANSFERASE-LIKE 8;Oryzabase Gene Symbol Synonym(s)=OsGATL8;Oryzabase Gene Name Synonym(s)=galacturonosyltransferase-like 8;Note=Similar to Transferase%2C transferring glycosyl groups.;Transcript_evidence=AK064068 (DDBJ%2C Best hit);ORF_evidence=B6TPU8 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 8 (IPR002495);NIAS_FLcDNA=001-125-G08;Oryzabase=23249;Expression=AK064068;TENOR=Os03t0300900-03;KEGG=Os03t0300900-03
Chr03	irgsp1_rep	five_prime_UTR	10585137	10585137	.	+	.	Parent=Os03t0300900-03
Chr03	irgsp1_rep	CDS	10585138	10585692	.	+	0	Parent=Os03t0300900-03
Chr03	irgsp1_rep	three_prime_UTR	10585693	10586011	.	+	.	Parent=Os03t0300900-03
Chr03	irgsp1_rep	mRNA	10599142	10601494	.	+	.	ID=Os03t0301200-01;Name=Os03t0301200-01;Locus_id=Os03g0301200;CGSNL Gene Symbol=BC1L1;CGSNL Gene Name=BRITTLE CULM-LIKE 1;Oryzabase Gene Symbol Synonym(s)=OsBC1L1%2C OsPCS13%2C PCS13;Oryzabase Gene Name Synonym(s)=(sativa BRITTLE CULM1-like 1)%2C Phytochelatin synthase 13;Note=COBRA-like protein 7 precursor.;Transcript_evidence=AK119578 (DDBJ%2C Best hit);ORF_evidence=Q5YLM2 (UniProt);InterPro=Glycosyl-phosphatidyl inositol-anchored%2C plant (IPR006918);NIAS_FLcDNA=002-117-B09;Oryzabase=8282;Expression=AK119578;TENOR=Os03t0301200-01;KEGG=Os03t0301200-01
Chr03	irgsp1_rep	five_prime_UTR	10599142	10599174	.	+	.	Parent=Os03t0301200-01
Chr03	irgsp1_rep	CDS	10599175	10601190	.	+	0	Parent=Os03t0301200-01
Chr03	irgsp1_rep	three_prime_UTR	10601191	10601494	.	+	.	Parent=Os03t0301200-01
Chr03	irgsp1_rep	mRNA	10599150	10601525	.	+	.	ID=Os03t0301200-02;Name=Os03t0301200-02;Locus_id=Os03g0301200;CGSNL Gene Symbol=BC1L1;CGSNL Gene Name=BRITTLE CULM-LIKE 1;Oryzabase Gene Symbol Synonym(s)=OsBC1L1%2C OsPCS13%2C PCS13;Oryzabase Gene Name Synonym(s)=(sativa BRITTLE CULM1-like 1)%2C Phytochelatin synthase 13;Note=Glycosyl-phosphatidyl inositol-anchored%2C plant domain containing protein.;Transcript_evidence=AK065552 (DDBJ%2C Best hit);ORF_evidence=Q10MP1 (UniProt);GO=Molecular Function: carbohydrate binding (GO:0030246);InterPro=Glycosyl-phosphatidyl inositol-anchored%2C plant (IPR006918),Carbohydrate-binding (IPR008965);NIAS_FLcDNA=J013027D03;Oryzabase=8282;TENOR=Os03t0301200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	10599150	10599174	.	+	.	Parent=Os03t0301200-02
Chr03	irgsp1_rep	CDS	10599175	10599232	.	+	0	Parent=Os03t0301200-02
Chr03	irgsp1_rep	CDS	10599284	10600288	.	+	2	Parent=Os03t0301200-02
Chr03	irgsp1_rep	CDS	10600368	10600483	.	+	2	Parent=Os03t0301200-02
Chr03	irgsp1_rep	three_prime_UTR	10600484	10601525	.	+	.	Parent=Os03t0301200-02
Chr03	irgsp1_rep	mRNA	10606890	10612255	.	+	.	ID=Os03t0301400-01;Name=Os03t0301400-01;Locus_id=Os03g0301400;Note=Exonuclease domain containing protein.;Transcript_evidence=AK101988 (DDBJ%2C Best hit);ORF_evidence=B6TZF8 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: exonuclease activity (GO:0004527);InterPro=Exonuclease (IPR006055),Ribonuclease H-like (IPR012337),Exonuclease%2C RNase T/DNA polymerase III (IPR013520);NIAS_FLcDNA=J033079C02;Expression=AK101988;TENOR=Os03t0301400-01;KEGG=Os03t0301400-01
Chr03	irgsp1_rep	five_prime_UTR	10606890	10607246	.	+	.	Parent=Os03t0301400-01
Chr03	irgsp1_rep	five_prime_UTR	10610144	10610243	.	+	.	Parent=Os03t0301400-01
Chr03	irgsp1_rep	CDS	10610244	10610770	.	+	0	Parent=Os03t0301400-01
Chr03	irgsp1_rep	CDS	10611200	10611405	.	+	1	Parent=Os03t0301400-01
Chr03	irgsp1_rep	CDS	10611768	10611976	.	+	2	Parent=Os03t0301400-01
Chr03	irgsp1_rep	three_prime_UTR	10611977	10612255	.	+	.	Parent=Os03t0301400-01
Chr03	irgsp1_rep	mRNA	10613655	10615583	.	+	.	ID=Os03t0301500-00;Name=Os03t0301500-00;Locus_id=Os03g0301500;CGSNL Gene Symbol=C3H21;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 21;Oryzabase Gene Symbol Synonym(s)=OsC3H21;Oryzabase Gene Name Synonym(s)=zinc finger CCCH domain-containing protein 21;Note=Zinc finger%2C CCCH-type domain containing protein.;Transcript_evidence=EU959235 (DDBJ);ORF_evidence=B9F7W1 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);Oryzabase=8585;TENOR=Os03t0301500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	10613655	10614602	.	+	0	Parent=Os03t0301500-00
Chr03	irgsp1_rep	CDS	10615272	10615583	.	+	0	Parent=Os03t0301500-00
Chr03	irgsp1_rep	mRNA	10615819	10619334	.	-	.	ID=Os03t0301550-01;Name=Os03t0301550-01;Locus_id=Os03g0301550;Note=Hypothetical gene.;Transcript_evidence=AK288301 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090020B20;TENOR=Os03t0301550-01;KEGG=Os03t0301550-01
Chr03	irgsp1_rep	five_prime_UTR	10617568	10619334	.	-	.	Parent=Os03t0301550-01
Chr03	irgsp1_rep	CDS	10617139	10617567	.	-	0	Parent=Os03t0301550-01
Chr03	irgsp1_rep	three_prime_UTR	10615819	10617138	.	-	.	Parent=Os03t0301550-01
Chr03	irgsp1_rep	mRNA	10620065	10620827	.	+	.	ID=Os03t0301600-01;Name=Os03t0301600-01;Locus_id=Os03g0301600;Note=Conserved hypothetical protein.;Transcript_evidence=AK062764 (DDBJ%2C Best hit);ORF_evidence=B9F7W2 (UniProt);NIAS_FLcDNA=001-106-H04;Expression=AK062764;TENOR=Os03t0301600-01;KEGG=Os03t0301600-01
Chr03	irgsp1_rep	five_prime_UTR	10620065	10620127	.	+	.	Parent=Os03t0301600-01
Chr03	irgsp1_rep	CDS	10620128	10620170	.	+	0	Parent=Os03t0301600-01
Chr03	irgsp1_rep	CDS	10620269	10620525	.	+	2	Parent=Os03t0301600-01
Chr03	irgsp1_rep	three_prime_UTR	10620526	10620827	.	+	.	Parent=Os03t0301600-01
Chr03	irgsp1_rep	mRNA	10621714	10625395	.	-	.	ID=Os03t0301700-01;Name=Os03t0301700-01;Locus_id=Os03g0301700;Oryzabase Gene Symbol Synonym(s)=OsPP2C33%2C PP2C33%2C OsPP51;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C33%2C protein phosphatase 2C 33%2C protein phosphatase 51;Note=Similar to Calmodulin-binding protein phosphatase.;Transcript_evidence=AK101878 (DDBJ%2C Best hit);ORF_evidence=B6TFE7 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J033070J12;Oryzabase=17908;Expression=AK101878;TENOR=Os03t0301700-01;KEGG=Os03t0301700-01
Chr03	irgsp1_rep	five_prime_UTR	10625123	10625395	.	-	.	Parent=Os03t0301700-01
Chr03	irgsp1_rep	CDS	10624910	10625122	.	-	0	Parent=Os03t0301700-01
Chr03	irgsp1_rep	CDS	10624633	10624804	.	-	0	Parent=Os03t0301700-01
Chr03	irgsp1_rep	CDS	10624315	10624532	.	-	2	Parent=Os03t0301700-01
Chr03	irgsp1_rep	CDS	10624101	10624208	.	-	0	Parent=Os03t0301700-01
Chr03	irgsp1_rep	CDS	10623887	10624012	.	-	0	Parent=Os03t0301700-01
Chr03	irgsp1_rep	CDS	10623547	10623786	.	-	0	Parent=Os03t0301700-01
Chr03	irgsp1_rep	CDS	10622139	10622360	.	-	0	Parent=Os03t0301700-01
Chr03	irgsp1_rep	three_prime_UTR	10621714	10622138	.	-	.	Parent=Os03t0301700-01
Chr03	irgsp1_rep	mRNA	10621704	10625365	.	-	.	ID=Os03t0301700-02;Name=Os03t0301700-02;Locus_id=Os03g0301700;Oryzabase Gene Symbol Synonym(s)=OsPP2C33%2C PP2C33%2C OsPP51;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C33%2C protein phosphatase 2C 33%2C protein phosphatase 51;Note=Similar to Calmodulin-binding protein phosphatase.;Transcript_evidence=AK106531 (DDBJ%2C Best hit),AK102523 (DDBJ%2C Best hit);ORF_evidence=B6TFE7 (UniProt);NIAS_FLcDNA=002-108-A02,J033096A13;Oryzabase=17908;TENOR=Os03t0301700-02
Chr03	irgsp1_rep	five_prime_UTR	10625123	10625365	.	-	.	Parent=Os03t0301700-02
Chr03	irgsp1_rep	CDS	10624910	10625122	.	-	0	Parent=Os03t0301700-02
Chr03	irgsp1_rep	CDS	10624633	10624804	.	-	0	Parent=Os03t0301700-02
Chr03	irgsp1_rep	CDS	10624315	10624532	.	-	2	Parent=Os03t0301700-02
Chr03	irgsp1_rep	CDS	10624101	10624208	.	-	0	Parent=Os03t0301700-02
Chr03	irgsp1_rep	CDS	10623887	10624012	.	-	0	Parent=Os03t0301700-02
Chr03	irgsp1_rep	CDS	10623547	10623786	.	-	0	Parent=Os03t0301700-02
Chr03	irgsp1_rep	CDS	10622139	10622360	.	-	0	Parent=Os03t0301700-02
Chr03	irgsp1_rep	three_prime_UTR	10621704	10622138	.	-	.	Parent=Os03t0301700-02
Chr03	irgsp1_rep	mRNA	10629886	10632864	.	-	.	ID=Os03t0301800-01;Name=Os03t0301800-01;Locus_id=Os03g0301800;Note=Similar to Kinesin-like polypeptides 9 (Fragment).;Transcript_evidence=AK106465 (DDBJ%2C Best hit);ORF_evidence=A4GU96 (UniProt);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752);NIAS_FLcDNA=002-103-H04;Expression=AK106465;TENOR=Os03t0301800-01;KEGG=Os03t0301800-01
Chr03	irgsp1_rep	CDS	10632729	10632864	.	-	0	Parent=Os03t0301800-01
Chr03	irgsp1_rep	CDS	10632449	10632608	.	-	2	Parent=Os03t0301800-01
Chr03	irgsp1_rep	CDS	10632107	10632360	.	-	1	Parent=Os03t0301800-01
Chr03	irgsp1_rep	CDS	10631850	10632013	.	-	2	Parent=Os03t0301800-01
Chr03	irgsp1_rep	CDS	10631577	10631765	.	-	0	Parent=Os03t0301800-01
Chr03	irgsp1_rep	CDS	10630907	10631403	.	-	0	Parent=Os03t0301800-01
Chr03	irgsp1_rep	CDS	10630160	10630292	.	-	1	Parent=Os03t0301800-01
Chr03	irgsp1_rep	three_prime_UTR	10629886	10630159	.	-	.	Parent=Os03t0301800-01
Chr03	irgsp1_rep	mRNA	10644184	10645171	.	+	.	ID=Os03t0301900-00;Name=Os03t0301900-00;Locus_id=Os03g0301900;Note=Similar to Plastidic phosphate translocator-like protein1.;Transcript_evidence=EU956200 (DDBJ);ORF_evidence=NP_001159001.1 (RefSeq);TENOR=Os03t0301900-00;KEGG=Os03t0301900-00
Chr03	irgsp1_rep	five_prime_UTR	10644184	10644556	.	+	.	Parent=Os03t0301900-00
Chr03	irgsp1_rep	CDS	10644557	10645171	.	+	0	Parent=Os03t0301900-00
Chr03	irgsp1_rep	mRNA	10645184	10646734	.	+	.	ID=Os03t0301950-01;Name=Os03t0301950-01;Locus_id=Os03g0301950;RAP-DB Gene Symbol Synonym(s)=PEX11-2%2C OsPEX11-2%2C OsPEX11-5;RAP-DB Gene Name Synonym(s)=PEROXIN 11-2%2C Peroxisomal membrane protein 11-2%2C Peroxin-11-2;CGSNL Gene Symbol=PEX11-2;CGSNL Gene Name=PEROXIN 11-2;Oryzabase Gene Symbol Synonym(s)=OsPEX11-2%2C OsPEX11-5;Oryzabase Gene Name Synonym(s)=Peroxisomal membrane protein 11-2%2C Peroxin-11-2;Note=Peroxisomal protein;Transcript_evidence=XM_015775368.1.;ORF_evidence=Q10MN3;GO=Biological Process: peroxisome fission (GO:0016559),Cellular Component: integral component of peroxisomal membrane (GO:0005779);InterPro=Peroxisomal biogenesis factor 11 (IPR008733);Manual Curation=October 5%2C 2016;Literature_PMID=18291602;Oryzabase=7183;TENOR=Os03t0301950-00
Chr03	irgsp1_rep	five_prime_UTR	10645184	10645799	.	+	.	Parent=Os03t0301950-01
Chr03	irgsp1_rep	CDS	10645800	10646564	.	+	0	Parent=Os03t0301950-01
Chr03	irgsp1_rep	three_prime_UTR	10646565	10646734	.	+	.	Parent=Os03t0301950-01
Chr03	irgsp1_rep	mRNA	10647683	10648574	.	+	.	ID=Os03t0302000-01;Name=Os03t0302000-01;Locus_id=Os03g0302000;RAP-DB Gene Symbol Synonym(s)=PEX11-3%2C OsPEX11-3%2C OsPEX11;RAP-DB Gene Name Synonym(s)=PEROXIN 11-3%2C Peroxisomal membrane protein 11-3%2C Peroxin-11-3;CGSNL Gene Symbol=PEX11-3;CGSNL Gene Name=PEROXIN 11-3;Oryzabase Gene Symbol Synonym(s)=OsPEX11-3%2C OsPEX11;Oryzabase Gene Name Synonym(s)=Peroxisomal membrane protein 11-3%2C Peroxin-11-3%2C peroxisomal biogenesis factor 11;Note=Peroxisomal protein%2C Peroxisomal biogenesis factor 11%2C Salt stress tolerance%2C Antioxidant defense;Transcript_evidence=AK287976;ORF_evidence=Q10MN2;GO=Biological Process: peroxisome fission (GO:0016559),Cellular Component: integral component of peroxisomal membrane (GO:0005779);InterPro=Peroxisomal biogenesis factor 11 (IPR008733);NIAS_FLcDNA=J075080I23;Manual Curation=October 5%2C 2016;Literature_PMID=27695459,18291602;Oryzabase=7184;TENOR=Os03t0302000-01;KEGG=Os03t0302000-01
Chr03	irgsp1_rep	five_prime_UTR	10647683	10647773	.	+	.	Parent=Os03t0302000-01
Chr03	irgsp1_rep	CDS	10647774	10648502	.	+	0	Parent=Os03t0302000-01
Chr03	irgsp1_rep	three_prime_UTR	10648503	10648574	.	+	.	Parent=Os03t0302000-01
Chr03	irgsp1_rep	mRNA	10649612	10650366	.	+	.	ID=Os03t0302100-01;Name=Os03t0302100-01;Locus_id=Os03g0302100;Note=Non-protein coding transcript.;Transcript_evidence=AK063197 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-112-C04;TENOR=Os03t0302100-01
Chr03	irgsp1_rep	exon	10649612	10650366	.	+	.	Parent=Os03t0302100-01
Chr03	irgsp1_rep	mRNA	10651199	10655589	.	+	.	ID=Os03t0302200-01;Name=Os03t0302200-01;Locus_id=Os03g0302200;RAP-DB Gene Symbol Synonym(s)=OsHIRP1;RAP-DB Gene Name Synonym(s)=heat-induced RING finger protein 1;CGSNL Gene Symbol=HIRP1;CGSNL Gene Name=HEAT-INDUCED RING FINGER PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsRFP%2C OsHIRP1%2C DLN82%2C OsDLN82;Oryzabase Gene Name Synonym(s)=RING finger protein%2C heat-induced RING finger protein 1%2C DLN repressor 82%2C DLN motif protein 82;Note=E3 ligase%2C Regulation of response to heat stress;Transcript_evidence=AK120853;ORF_evidence=Q10MN1;InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING-type (IPR001841),Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C PHD-finger (IPR019787),Zinc finger%2C RING-type%2C conserved site (IPR017907);NIAS_FLcDNA=J023023P20;Manual Curation=April 24%2C 2020;Literature_PMID=30730020;Oryzabase=21037;Expression=AK120853;TENOR=Os03t0302200-01;KEGG=Os03t0302200-01;Subcellular location=cytosol (GO:0005829), nucleus (GO:0005634), nucleus (GO:0005634) [heat stress]
Chr03	irgsp1_rep	five_prime_UTR	10651199	10651702	.	+	.	Parent=Os03t0302200-01
Chr03	irgsp1_rep	CDS	10651703	10653157	.	+	0	Parent=Os03t0302200-01
Chr03	irgsp1_rep	CDS	10653988	10654932	.	+	0	Parent=Os03t0302200-01
Chr03	irgsp1_rep	three_prime_UTR	10654933	10654985	.	+	.	Parent=Os03t0302200-01
Chr03	irgsp1_rep	three_prime_UTR	10655153	10655589	.	+	.	Parent=Os03t0302200-01
Chr03	irgsp1_rep	mRNA	10662390	10663454	.	+	.	ID=Os03t0302500-01;Name=Os03t0302500-01;Locus_id=Os03g0302500;Note=Protein of unknown function DUF3511 domain containing protein.;Transcript_evidence=AK106296 (DDBJ%2C Best hit);ORF_evidence=A3AH40 (UniProt);InterPro=Protein of unknown function DUF3511 (IPR021899);NIAS_FLcDNA=002-101-B11;Expression=AK106296;TENOR=Os03t0302500-01;KEGG=Os03t0302500-01
Chr03	irgsp1_rep	five_prime_UTR	10662390	10662427	.	+	.	Parent=Os03t0302500-01
Chr03	irgsp1_rep	CDS	10662428	10662789	.	+	0	Parent=Os03t0302500-01
Chr03	irgsp1_rep	CDS	10663188	10663188	.	+	1	Parent=Os03t0302500-01
Chr03	irgsp1_rep	three_prime_UTR	10663189	10663454	.	+	.	Parent=Os03t0302500-01
Chr03	irgsp1_rep	mRNA	10672591	10674055	.	+	.	ID=Os03t0302700-01;Name=Os03t0302700-01;Locus_id=Os03g0302700;Oryzabase Gene Symbol Synonym(s)=APC11%2C OsAPC11;Oryzabase Gene Name Synonym(s)=ANAPHASE PROMOTING COMPLEX 11;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK112010 (DDBJ%2C Best hit);ORF_evidence=NP_001152943.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=006-210-E12;Oryzabase=21058;Expression=AK112010;TENOR=Os03t0302700-01;KEGG=Os03t0302700-01
Chr03	irgsp1_rep	five_prime_UTR	10672591	10672736	.	+	.	Parent=Os03t0302700-01
Chr03	irgsp1_rep	five_prime_UTR	10673230	10673237	.	+	.	Parent=Os03t0302700-01
Chr03	irgsp1_rep	CDS	10673238	10673492	.	+	0	Parent=Os03t0302700-01
Chr03	irgsp1_rep	three_prime_UTR	10673493	10674055	.	+	.	Parent=Os03t0302700-01
Chr03	irgsp1_rep	mRNA	10672648	10673738	.	+	.	ID=Os03t0302700-02;Name=Os03t0302700-02;Locus_id=Os03g0302700;Oryzabase Gene Symbol Synonym(s)=APC11%2C OsAPC11;Oryzabase Gene Name Synonym(s)=ANAPHASE PROMOTING COMPLEX 11;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK121656 (DDBJ%2C Best hit);ORF_evidence=NP_001152943.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J033063B08;Oryzabase=21058;Expression=AK121656;TENOR=Os03t0302700-02;KEGG=Os03t0302700-02
Chr03	irgsp1_rep	five_prime_UTR	10672648	10672736	.	+	.	Parent=Os03t0302700-02
Chr03	irgsp1_rep	five_prime_UTR	10673230	10673237	.	+	.	Parent=Os03t0302700-02
Chr03	irgsp1_rep	CDS	10673238	10673492	.	+	0	Parent=Os03t0302700-02
Chr03	irgsp1_rep	three_prime_UTR	10673493	10673738	.	+	.	Parent=Os03t0302700-02
Chr03	irgsp1_rep	mRNA	10677797	10678946	.	+	.	ID=Os03t0302800-01;Name=Os03t0302800-01;Locus_id=Os03g0302800;Note=Similar to Long cell-linked locus protein.;Transcript_evidence=AK061293 (DDBJ%2C Best hit);ORF_evidence=Q946U8 (UniProt);NIAS_FLcDNA=006-301-B04;Expression=AK061293;TENOR=Os03t0302800-01;KEGG=Os03t0302800-01
Chr03	irgsp1_rep	five_prime_UTR	10677797	10677938	.	+	.	Parent=Os03t0302800-01
Chr03	irgsp1_rep	CDS	10677939	10678583	.	+	0	Parent=Os03t0302800-01
Chr03	irgsp1_rep	three_prime_UTR	10678584	10678946	.	+	.	Parent=Os03t0302800-01
Chr03	irgsp1_rep	mRNA	10677857	10678234	.	-	.	ID=Os03t0302850-00;Name=Os03t0302850-00;Locus_id=Os03g0302850;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os03t0302850-00
Chr03	irgsp1_rep	CDS	10677857	10678234	.	-	0	Parent=Os03t0302850-00
Chr03	irgsp1_rep	mRNA	10684315	10688768	.	+	.	ID=Os03t0302900-01;Name=Os03t0302900-01;Locus_id=Os03g0302900;Oryzabase Gene Symbol Synonym(s)=SSD1;Oryzabase Gene Name Synonym(s)=sword shape dwarf1;Note=Conserved hypothetical protein.;Transcript_evidence=AK069222 (DDBJ%2C Best hit);ORF_evidence=B8AMI3 (UniProt);NIAS_FLcDNA=J023014L15;Oryzabase=14288;Expression=AK069222;TENOR=Os03t0302900-01;KEGG=Os03t0302900-01
Chr03	irgsp1_rep	five_prime_UTR	10684315	10684490	.	+	.	Parent=Os03t0302900-01
Chr03	irgsp1_rep	five_prime_UTR	10684635	10684755	.	+	.	Parent=Os03t0302900-01
Chr03	irgsp1_rep	CDS	10684756	10684891	.	+	0	Parent=Os03t0302900-01
Chr03	irgsp1_rep	CDS	10684980	10685038	.	+	2	Parent=Os03t0302900-01
Chr03	irgsp1_rep	CDS	10685140	10686915	.	+	0	Parent=Os03t0302900-01
Chr03	irgsp1_rep	CDS	10687696	10687840	.	+	0	Parent=Os03t0302900-01
Chr03	irgsp1_rep	CDS	10687931	10688649	.	+	2	Parent=Os03t0302900-01
Chr03	irgsp1_rep	three_prime_UTR	10688650	10688768	.	+	.	Parent=Os03t0302900-01
Chr03	irgsp1_rep	mRNA	10692333	10693906	.	+	.	ID=Os03t0303100-01;Name=Os03t0303100-01;Locus_id=Os03g0303100;Note=Protein of unknown function DUF1645 family protein.;Transcript_evidence=AK071041 (DDBJ%2C Best hit);ORF_evidence=E7CQZ4 (UniProt);InterPro=Protein of unknown function DUF1645 (IPR012442);NIAS_FLcDNA=J023081F02;Expression=AK071041;TENOR=Os03t0303100-01;KEGG=Os03t0303100-01
Chr03	irgsp1_rep	five_prime_UTR	10692333	10692407	.	+	.	Parent=Os03t0303100-01
Chr03	irgsp1_rep	CDS	10692408	10693478	.	+	0	Parent=Os03t0303100-01
Chr03	irgsp1_rep	three_prime_UTR	10693479	10693906	.	+	.	Parent=Os03t0303100-01
Chr03	irgsp1_rep	mRNA	10707200	10713015	.	-	.	ID=Os03t0303500-01;Name=Os03t0303500-01;Locus_id=Os03g0303500;RAP-DB Gene Symbol Synonym(s)=OsP1;Oryzabase Gene Symbol Synonym(s)=OsP1%2C P1;Note=R2R3-MYB transcription factor%2C Anthocyanin biosynthesis in rice leaves%2C Activation of upstream anthocyanin biosynthetic genes;Transcript_evidence=Inferred from literature;ORF_evidence=Q10MM2;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeobox-like domain superfamily (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930),Myb-related protein P%2C C-terminal (IPR010588);Manual Curation=May 8%2C 2019;Literature_PMID=30891753;Oryzabase=23136
Chr03	irgsp1_rep	CDS	10712883	10713015	.	-	0	Parent=Os03t0303500-01
Chr03	irgsp1_rep	CDS	10712430	10712559	.	-	2	Parent=Os03t0303500-01
Chr03	irgsp1_rep	CDS	10709207	10709287	.	-	1	Parent=Os03t0303500-01
Chr03	irgsp1_rep	CDS	10707200	10707932	.	-	1	Parent=Os03t0303500-01
Chr03	irgsp1_rep	mRNA	10707200	10713015	.	-	.	ID=Os03t0303500-02;Name=Os03t0303500-02;Locus_id=Os03g0303500;RAP-DB Gene Symbol Synonym(s)=OsP1;Oryzabase Gene Symbol Synonym(s)=OsP1%2C P1;Note=R2R3-MYB transcription factor;Transcript_evidence=AF474141;ORF_evidence=Q8S3X7;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeobox-like domain superfamily (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930),Myb-related protein P%2C C-terminal (IPR010588);Manual Curation=May 9%2C 2019;Literature_PMID=30891753;Oryzabase=23136
Chr03	irgsp1_rep	CDS	10712883	10713015	.	-	0	Parent=Os03t0303500-02
Chr03	irgsp1_rep	CDS	10712430	10712559	.	-	2	Parent=Os03t0303500-02
Chr03	irgsp1_rep	CDS	10707200	10707932	.	-	1	Parent=Os03t0303500-02
Chr03	irgsp1_rep	mRNA	10748551	10749553	.	-	.	ID=Os03t0304100-01;Name=Os03t0304100-01;Locus_id=Os03g0304100;Note=Conserved hypothetical protein.;Transcript_evidence=AK111121 (DDBJ%2C Best hit);ORF_evidence=B8AMI6 (UniProt);NIAS_FLcDNA=002-176-C02;Expression=AK111121;TENOR=Os03t0304100-01;KEGG=Os03t0304100-01
Chr03	irgsp1_rep	five_prime_UTR	10749498	10749553	.	-	.	Parent=Os03t0304100-01
Chr03	irgsp1_rep	CDS	10749410	10749497	.	-	0	Parent=Os03t0304100-01
Chr03	irgsp1_rep	CDS	10749244	10749314	.	-	2	Parent=Os03t0304100-01
Chr03	irgsp1_rep	CDS	10748922	10749147	.	-	0	Parent=Os03t0304100-01
Chr03	irgsp1_rep	CDS	10748670	10748827	.	-	2	Parent=Os03t0304100-01
Chr03	irgsp1_rep	three_prime_UTR	10748551	10748669	.	-	.	Parent=Os03t0304100-01
Chr03	irgsp1_rep	mRNA	10752594	10759841	.	+	.	ID=Os03t0304400-01;Name=Os03t0304400-01;Locus_id=Os03g0304400;CGSNL Gene Symbol=DLN83;CGSNL Gene Name=DLN REPRESSOR 83;Oryzabase Gene Symbol Synonym(s)=OsDLN83;Oryzabase Gene Name Synonym(s)=DLN repressor 83%2C DLN motif protein 83;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK067385 (DDBJ%2C Best hit);ORF_evidence=A2XFS2 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=BRCT (IPR001357),Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-finger (IPR019787);NIAS_FLcDNA=J013100I19;Oryzabase=23181;Expression=AK067385;TENOR=Os03t0304400-01;KEGG=Os03t0304400-01
Chr03	irgsp1_rep	five_prime_UTR	10752594	10752672	.	+	.	Parent=Os03t0304400-01
Chr03	irgsp1_rep	CDS	10752673	10752771	.	+	0	Parent=Os03t0304400-01
Chr03	irgsp1_rep	CDS	10752883	10752972	.	+	0	Parent=Os03t0304400-01
Chr03	irgsp1_rep	CDS	10753055	10753159	.	+	0	Parent=Os03t0304400-01
Chr03	irgsp1_rep	CDS	10753511	10753612	.	+	0	Parent=Os03t0304400-01
Chr03	irgsp1_rep	CDS	10754635	10754719	.	+	0	Parent=Os03t0304400-01
Chr03	irgsp1_rep	CDS	10755195	10755279	.	+	2	Parent=Os03t0304400-01
Chr03	irgsp1_rep	CDS	10755387	10755431	.	+	1	Parent=Os03t0304400-01
Chr03	irgsp1_rep	CDS	10755599	10758586	.	+	1	Parent=Os03t0304400-01
Chr03	irgsp1_rep	CDS	10758753	10758969	.	+	1	Parent=Os03t0304400-01
Chr03	irgsp1_rep	CDS	10759107	10759679	.	+	0	Parent=Os03t0304400-01
Chr03	irgsp1_rep	three_prime_UTR	10759680	10759841	.	+	.	Parent=Os03t0304400-01
Chr03	irgsp1_rep	mRNA	10772472	10775507	.	-	.	ID=Os03t0304500-01;Name=Os03t0304500-01;Locus_id=Os03g0304500;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK101290 (DDBJ%2C Best hit);ORF_evidence=XP_002874939.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515),Molecular Function: heat shock protein binding (GO:0031072);InterPro=Tetratricopeptide TPR-1 (IPR001440),Heat shock protein DnaJ%2C N-terminal (IPR001623),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033033G09;Expression=AK101290;TENOR=Os03t0304500-01;KEGG=Os03t0304500-01
Chr03	irgsp1_rep	five_prime_UTR	10775392	10775507	.	-	.	Parent=Os03t0304500-01
Chr03	irgsp1_rep	CDS	10775326	10775391	.	-	0	Parent=Os03t0304500-01
Chr03	irgsp1_rep	CDS	10774384	10774847	.	-	0	Parent=Os03t0304500-01
Chr03	irgsp1_rep	CDS	10772813	10774289	.	-	1	Parent=Os03t0304500-01
Chr03	irgsp1_rep	three_prime_UTR	10772472	10772812	.	-	.	Parent=Os03t0304500-01
Chr03	irgsp1_rep	mRNA	10773687	10774800	.	+	.	ID=Os03t0304550-00;Name=Os03t0304550-00;Locus_id=Os03g0304550;Note=Hypothetical conserved gene.;Transcript_evidence=BT085356 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0304550-00;KEGG=Os03t0304550-00
Chr03	irgsp1_rep	five_prime_UTR	10773687	10773845	.	+	.	Parent=Os03t0304550-00
Chr03	irgsp1_rep	CDS	10773846	10774285	.	+	0	Parent=Os03t0304550-00
Chr03	irgsp1_rep	CDS	10774376	10774469	.	+	1	Parent=Os03t0304550-00
Chr03	irgsp1_rep	three_prime_UTR	10774470	10774502	.	+	.	Parent=Os03t0304550-00
Chr03	irgsp1_rep	three_prime_UTR	10774557	10774800	.	+	.	Parent=Os03t0304550-00
Chr03	irgsp1_rep	mRNA	10804094	10806772	.	-	.	ID=Os03t0304800-01;Name=Os03t0304800-01;Locus_id=Os03g0304800;Note=Lg106-like family protein.;Transcript_evidence=AK062656 (DDBJ%2C Best hit);ORF_evidence=NP_001148326.1 (RefSeq);InterPro=Endosulphine (IPR006760);NIAS_FLcDNA=001-105-E12;Expression=AK062656;TENOR=Os03t0304800-01;KEGG=Os03t0304800-01
Chr03	irgsp1_rep	five_prime_UTR	10806715	10806772	.	-	.	Parent=Os03t0304800-01
Chr03	irgsp1_rep	five_prime_UTR	10806503	10806528	.	-	.	Parent=Os03t0304800-01
Chr03	irgsp1_rep	CDS	10806455	10806502	.	-	0	Parent=Os03t0304800-01
Chr03	irgsp1_rep	CDS	10805111	10805167	.	-	0	Parent=Os03t0304800-01
Chr03	irgsp1_rep	CDS	10804776	10804823	.	-	0	Parent=Os03t0304800-01
Chr03	irgsp1_rep	CDS	10804634	10804693	.	-	0	Parent=Os03t0304800-01
Chr03	irgsp1_rep	CDS	10804483	10804536	.	-	0	Parent=Os03t0304800-01
Chr03	irgsp1_rep	three_prime_UTR	10804475	10804482	.	-	.	Parent=Os03t0304800-01
Chr03	irgsp1_rep	three_prime_UTR	10804094	10804361	.	-	.	Parent=Os03t0304800-01
Chr03	irgsp1_rep	mRNA	10816009	10820322	.	-	.	ID=Os03t0305000-01;Name=Os03t0305000-01;Locus_id=Os03g0305000;Note=AMP-binding protein.;Transcript_evidence=AK243161 (DDBJ%2C Best hit);ORF_evidence=Q10ML0 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873),AMP-binding%2C conserved site (IPR020845);NIAS_FLcDNA=J100034I22;TENOR=Os03t0305000-01;KEGG=Os03t0305000-01
Chr03	irgsp1_rep	five_prime_UTR	10820220	10820322	.	-	.	Parent=Os03t0305000-01
Chr03	irgsp1_rep	CDS	10820004	10820219	.	-	0	Parent=Os03t0305000-01
Chr03	irgsp1_rep	CDS	10817971	10818561	.	-	0	Parent=Os03t0305000-01
Chr03	irgsp1_rep	CDS	10816234	10817130	.	-	0	Parent=Os03t0305000-01
Chr03	irgsp1_rep	three_prime_UTR	10816009	10816233	.	-	.	Parent=Os03t0305000-01
Chr03	irgsp1_rep	mRNA	10816271	10818174	.	+	.	ID=Os03t0305050-00;Name=Os03t0305050-00;Locus_id=Os03g0305050;Note=Hypothetical gene.;Transcript_evidence=EU941562 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0305050-00;KEGG=Os03t0305050-00
Chr03	irgsp1_rep	five_prime_UTR	10816271	10816272	.	+	.	Parent=Os03t0305050-00
Chr03	irgsp1_rep	CDS	10816273	10817136	.	+	0	Parent=Os03t0305050-00
Chr03	irgsp1_rep	three_prime_UTR	10817137	10817157	.	+	.	Parent=Os03t0305050-00
Chr03	irgsp1_rep	three_prime_UTR	10818001	10818174	.	+	.	Parent=Os03t0305050-00
Chr03	irgsp1_rep	mRNA	10824184	10827482	.	-	.	ID=Os03t0305100-01;Name=Os03t0305100-01;Locus_id=Os03g0305100;Note=Similar to AMP-binding protein.;Transcript_evidence=AK101765 (DDBJ%2C Best hit);ORF_evidence=B6SS27 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873),AMP-binding%2C conserved site (IPR020845);NIAS_FLcDNA=J033064F11;Expression=AK101765;TENOR=Os03t0305100-01;KEGG=Os03t0305100-01
Chr03	irgsp1_rep	five_prime_UTR	10827381	10827482	.	-	.	Parent=Os03t0305100-01
Chr03	irgsp1_rep	CDS	10827144	10827380	.	-	0	Parent=Os03t0305100-01
Chr03	irgsp1_rep	CDS	10825413	10826003	.	-	0	Parent=Os03t0305100-01
Chr03	irgsp1_rep	CDS	10824285	10825181	.	-	0	Parent=Os03t0305100-01
Chr03	irgsp1_rep	three_prime_UTR	10824184	10824284	.	-	.	Parent=Os03t0305100-01
Chr03	irgsp1_rep	mRNA	10824322	10826017	.	+	.	ID=Os03t0305150-00;Name=Os03t0305150-00;Locus_id=Os03g0305150;Note=Hypothetical protein.;Transcript_evidence=EU941562 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0305150-00
Chr03	irgsp1_rep	five_prime_UTR	10824322	10825142	.	+	.	Parent=Os03t0305150-00
Chr03	irgsp1_rep	CDS	10825143	10825160	.	+	0	Parent=Os03t0305150-00
Chr03	irgsp1_rep	CDS	10825395	10825832	.	+	0	Parent=Os03t0305150-00
Chr03	irgsp1_rep	three_prime_UTR	10825833	10826017	.	+	.	Parent=Os03t0305150-00
Chr03	irgsp1_rep	mRNA	10831260	10832340	.	-	.	ID=Os03t0305200-01;Name=Os03t0305200-01;Locus_id=Os03g0305200;Note=Conserved hypothetical protein.;Transcript_evidence=AK108450 (DDBJ%2C Best hit);ORF_evidence=A2XFT0 (UniProt);NIAS_FLcDNA=002-143-C08;Expression=AK108450;TENOR=Os03t0305200-01;KEGG=Os03t0305200-01
Chr03	irgsp1_rep	five_prime_UTR	10832122	10832340	.	-	.	Parent=Os03t0305200-01
Chr03	irgsp1_rep	CDS	10831492	10832121	.	-	0	Parent=Os03t0305200-01
Chr03	irgsp1_rep	three_prime_UTR	10831260	10831491	.	-	.	Parent=Os03t0305200-01
Chr03	irgsp1_rep	mRNA	10839459	10840785	.	-	.	ID=Os03t0305400-01;Name=Os03t0305400-01;Locus_id=Os03g0305400;Note=UspA domain containing protein.;Transcript_evidence=AK071397 (DDBJ%2C Best hit);ORF_evidence=Q10MK6 (UniProt);GO=Biological Process: response to stress (GO:0006950);InterPro=Universal stress protein A (IPR006015),UspA (IPR006016),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J023097A13;Expression=AK071397;TENOR=Os03t0305400-01;KEGG=Os03t0305400-01
Chr03	irgsp1_rep	five_prime_UTR	10840706	10840785	.	-	.	Parent=Os03t0305400-01
Chr03	irgsp1_rep	CDS	10840495	10840705	.	-	0	Parent=Os03t0305400-01
Chr03	irgsp1_rep	CDS	10840295	10840401	.	-	2	Parent=Os03t0305400-01
Chr03	irgsp1_rep	CDS	10840055	10840206	.	-	0	Parent=Os03t0305400-01
Chr03	irgsp1_rep	CDS	10839836	10839908	.	-	1	Parent=Os03t0305400-01
Chr03	irgsp1_rep	three_prime_UTR	10839459	10839835	.	-	.	Parent=Os03t0305400-01
Chr03	irgsp1_rep	mRNA	10843262	10847657	.	+	.	ID=Os03t0305500-01;Name=Os03t0305500-01;Locus_id=Os03g0305500;RAP-DB Gene Symbol Synonym(s)=ASL1%2C OsASL1.1%2C OsASL1%2C OsAL1%2C red1;RAP-DB Gene Name Synonym(s)=ARGININOSUCCINATE LYASE 1%2C argininosuccinate lyase 1%2C root elongation defect 1;CGSNL Gene Symbol=ASL1;CGSNL Gene Name=ARGININOSUCCINATE LYASE 1;Oryzabase Gene Symbol Synonym(s)=OsASL1%2C OsASL1.1%2C OsASL1.2%2C OsAL1%2C red1;Oryzabase Gene Name Synonym(s)=argininosuccinate lyase 1%2C root elongation defect 1;Note=Argininosuccinate lyase%2C Root elongation;Transcript_evidence=AB863631,AK070638;ORF_evidence=Q10MK5;GO=Biological Process: arginine biosynthetic process via ornithine (GO:0042450),Molecular Function: catalytic activity (GO:0003824),Molecular Function: argininosuccinate lyase activity (GO:0004056);InterPro=Fumarate lyase family (IPR000362),Argininosuccinate lyase (IPR009049),Fumarase/histidase%2C N-terminal (IPR024083),L-Aspartase-like (IPR008948),Fumarate lyase%2C N-terminal (IPR022761),Argininosuccinate lyase%2C C-terminal (IPR029419),Fumarate lyase%2C conserved site (IPR020557);NIAS_FLcDNA=J023056K03;Manual Curation=January 14%2C 2015;Literature_PMID=24528386;Oryzabase=15658;TENOR=Os03t0305500-01;KEGG=Os03t0305500-01 (EC:4.3.2.1)
Chr03	irgsp1_rep	five_prime_UTR	10843262	10843346	.	+	.	Parent=Os03t0305500-01
Chr03	irgsp1_rep	CDS	10843347	10843667	.	+	0	Parent=Os03t0305500-01
Chr03	irgsp1_rep	CDS	10844074	10844337	.	+	0	Parent=Os03t0305500-01
Chr03	irgsp1_rep	CDS	10845006	10845122	.	+	0	Parent=Os03t0305500-01
Chr03	irgsp1_rep	CDS	10845908	10846056	.	+	0	Parent=Os03t0305500-01
Chr03	irgsp1_rep	CDS	10846427	10846718	.	+	1	Parent=Os03t0305500-01
Chr03	irgsp1_rep	CDS	10846793	10846957	.	+	0	Parent=Os03t0305500-01
Chr03	irgsp1_rep	CDS	10847218	10847469	.	+	0	Parent=Os03t0305500-01
Chr03	irgsp1_rep	three_prime_UTR	10847470	10847657	.	+	.	Parent=Os03t0305500-01
Chr03	irgsp1_rep	mRNA	10841438	10847469	.	+	.	ID=Os03t0305500-02;Name=Os03t0305500-02;Locus_id=Os03g0305500;RAP-DB Gene Symbol Synonym(s)=ASL1%2C OsASL1.2%2C OsASL1%2C OsAL1%2C red1;RAP-DB Gene Name Synonym(s)=ARGININOSUCCINATE LYASE 1%2C argininosuccinate lyase 1%2C root elongation defect 1;CGSNL Gene Symbol=ASL1;CGSNL Gene Name=ARGININOSUCCINATE LYASE 1;Oryzabase Gene Symbol Synonym(s)=OsASL1%2C OsASL1.1%2C OsASL1.2%2C OsAL1%2C red1;Oryzabase Gene Name Synonym(s)=argininosuccinate lyase 1%2C root elongation defect 1;Note=Argininosuccinate lyase%2C Splicing variant with unknown function;Transcript_evidence=AB863632;ORF_evidence=A0A024FLK4;GO=Biological Process: arginine biosynthetic process via ornithine (GO:0042450),Molecular Function: catalytic activity (GO:0003824),Molecular Function: argininosuccinate lyase activity (GO:0004056);InterPro=Fumarate lyase family (IPR000362),Argininosuccinate lyase (IPR009049),Fumarase/histidase%2C N-terminal (IPR024083),Fumarate lyase%2C N-terminal (IPR022761),L-Aspartase-like (IPR008948),Argininosuccinate lyase%2C C-terminal (IPR029419),Fumarate lyase%2C conserved site (IPR020557);Manual Curation=January 13%2C 2015;Literature_PMID=24528386;Oryzabase=15658;TENOR=Os03t0305500-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	10841438	10842454	.	+	0	Parent=Os03t0305500-02
Chr03	irgsp1_rep	CDS	10844074	10844337	.	+	0	Parent=Os03t0305500-02
Chr03	irgsp1_rep	CDS	10845006	10845122	.	+	0	Parent=Os03t0305500-02
Chr03	irgsp1_rep	CDS	10845908	10846056	.	+	0	Parent=Os03t0305500-02
Chr03	irgsp1_rep	CDS	10846427	10846718	.	+	1	Parent=Os03t0305500-02
Chr03	irgsp1_rep	CDS	10846793	10846957	.	+	0	Parent=Os03t0305500-02
Chr03	irgsp1_rep	CDS	10847218	10847469	.	+	0	Parent=Os03t0305500-02
Chr03	irgsp1_rep	mRNA	10848320	10849185	.	-	.	ID=Os03t0305550-00;Name=Os03t0305550-00;Locus_id=Os03g0305550;Note=Hypothetical gene.;Transcript_evidence=EU949424 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0305550-00
Chr03	irgsp1_rep	five_prime_UTR	10849064	10849185	.	-	.	Parent=Os03t0305550-00
Chr03	irgsp1_rep	five_prime_UTR	10848570	10849011	.	-	.	Parent=Os03t0305550-00
Chr03	irgsp1_rep	CDS	10848320	10848569	.	-	0	Parent=Os03t0305550-00
Chr03	irgsp1_rep	mRNA	10848558	10849987	.	+	.	ID=Os03t0305600-01;Name=Os03t0305600-01;Locus_id=Os03g0305600;Note=Mitochondrial import inner membrane translocase%2C subunit Tim17/22 family protein.;Transcript_evidence=AK063714 (DDBJ%2C Best hit);ORF_evidence=Q2HU23 (UniProt);InterPro=Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 (IPR003397);NIAS_FLcDNA=001-120-C03;Expression=AK063714;TENOR=Os03t0305600-01;KEGG=Os03t0305600-01
Chr03	irgsp1_rep	five_prime_UTR	10848558	10848655	.	+	.	Parent=Os03t0305600-01
Chr03	irgsp1_rep	CDS	10848656	10848793	.	+	0	Parent=Os03t0305600-01
Chr03	irgsp1_rep	CDS	10848922	10848971	.	+	0	Parent=Os03t0305600-01
Chr03	irgsp1_rep	CDS	10849089	10849162	.	+	1	Parent=Os03t0305600-01
Chr03	irgsp1_rep	CDS	10849284	10849315	.	+	2	Parent=Os03t0305600-01
Chr03	irgsp1_rep	CDS	10849439	10849472	.	+	0	Parent=Os03t0305600-01
Chr03	irgsp1_rep	CDS	10849575	10849786	.	+	2	Parent=Os03t0305600-01
Chr03	irgsp1_rep	three_prime_UTR	10849787	10849987	.	+	.	Parent=Os03t0305600-01
Chr03	irgsp1_rep	mRNA	10850816	10853954	.	+	.	ID=Os03t0305700-01;Name=Os03t0305700-01;Locus_id=Os03g0305700;Note=Similar to Peptide chain release factor 2 (Fragment).;Transcript_evidence=AK073807 (DDBJ%2C Best hit);ORF_evidence=NP_001148129.1 (RefSeq);GO=Biological Process: translational termination (GO:0006415),Cellular Component: cytoplasm (GO:0005737),Molecular Function: translation release factor activity (GO:0003747),Molecular Function: translation release factor activity%2C codon specific (GO:0016149);InterPro=Peptide chain release factor class I/class II (IPR000352),Peptide chain release factor 2 (IPR004374),Peptide chain release factor (IPR005139);NIAS_FLcDNA=J033070I07;Expression=AK073807;TENOR=Os03t0305700-01;KEGG=Os03t0305700-01
Chr03	irgsp1_rep	five_prime_UTR	10850816	10850839	.	+	.	Parent=Os03t0305700-01
Chr03	irgsp1_rep	CDS	10850840	10851208	.	+	0	Parent=Os03t0305700-01
Chr03	irgsp1_rep	CDS	10851432	10851644	.	+	0	Parent=Os03t0305700-01
Chr03	irgsp1_rep	CDS	10851743	10851844	.	+	0	Parent=Os03t0305700-01
Chr03	irgsp1_rep	CDS	10851942	10852079	.	+	0	Parent=Os03t0305700-01
Chr03	irgsp1_rep	CDS	10852294	10852598	.	+	0	Parent=Os03t0305700-01
Chr03	irgsp1_rep	CDS	10852896	10853049	.	+	1	Parent=Os03t0305700-01
Chr03	irgsp1_rep	CDS	10853391	10853516	.	+	0	Parent=Os03t0305700-01
Chr03	irgsp1_rep	three_prime_UTR	10853517	10853954	.	+	.	Parent=Os03t0305700-01
Chr03	irgsp1_rep	mRNA	10854014	10855740	.	-	.	ID=Os03t0305800-02;Name=Os03t0305800-02;Locus_id=Os03g0305800;Oryzabase Gene Symbol Synonym(s)=OsGT4;Oryzabase Gene Name Synonym(s)=glycosyltransferase 4;Note=Galactosyl transferase family protein.;Transcript_evidence=AK105101 (DDBJ%2C Best hit),AK105005 (DDBJ%2C Best hit);ORF_evidence=A2XFT5 (UniProt);NIAS_FLcDNA=001-100-D03,001-006-B09;Oryzabase=15247;Expression=AK105101;TENOR=Os03t0305800-02;KEGG=Os03t0305800-02
Chr03	irgsp1_rep	five_prime_UTR	10855685	10855740	.	-	.	Parent=Os03t0305800-02
Chr03	irgsp1_rep	CDS	10854233	10855684	.	-	0	Parent=Os03t0305800-02
Chr03	irgsp1_rep	three_prime_UTR	10854014	10854232	.	-	.	Parent=Os03t0305800-02
Chr03	irgsp1_rep	mRNA	10854229	10856874	.	+	.	ID=Os03t0305950-01;Name=Os03t0305950-01;Locus_id=Os03g0305950;Note=Similar to Xyloglucan 6-xylosyltransferase (EC 2.4.2.39) (AtXT1).;Transcript_evidence=AK241375 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065155E06;TENOR=Os03t0305950-01;KEGG=Os03t0305950-01 (EC:2.4.2.39)
Chr03	irgsp1_rep	five_prime_UTR	10854229	10854584	.	+	.	Parent=Os03t0305950-01
Chr03	irgsp1_rep	CDS	10854585	10855070	.	+	0	Parent=Os03t0305950-01
Chr03	irgsp1_rep	three_prime_UTR	10855071	10856874	.	+	.	Parent=Os03t0305950-01
Chr03	irgsp1_rep	mRNA	10864690	10866049	.	+	.	ID=Os03t0306100-00;Name=Os03t0306100-00;Locus_id=Os03g0306100;Oryzabase Gene Symbol Synonym(s)=OsGT5;Oryzabase Gene Name Synonym(s)=glycosyltransferase 5;Note=Galactosyl transferase family protein.;Transcript_evidence=AK335833 (DDBJ);ORF_evidence=NP_001151451.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=Galactosyl transferase (IPR008630);Oryzabase=15248;TENOR=Os03t0306100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	10864690	10866039	.	+	0	Parent=Os03t0306100-00
Chr03	irgsp1_rep	three_prime_UTR	10866040	10866049	.	+	.	Parent=Os03t0306100-00
Chr03	irgsp1_rep	mRNA	10866500	10868422	.	-	.	ID=Os03t0306200-01;Name=Os03t0306200-01;Locus_id=Os03g0306200;Oryzabase Gene Symbol Synonym(s)=OsWD40-69;Note=Similar to transducin family protein / WD-40 repeat family protein.;Transcript_evidence=AK241828 (DDBJ%2C Best hit);ORF_evidence=XP_002865733.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Bromodomain (IPR001487);NIAS_FLcDNA=J065212M16;Oryzabase=10750;TENOR=Os03t0306200-01;KEGG=Os03t0306200-01
Chr03	irgsp1_rep	five_prime_UTR	10868421	10868422	.	-	.	Parent=Os03t0306200-01
Chr03	irgsp1_rep	CDS	10868013	10868420	.	-	0	Parent=Os03t0306200-01
Chr03	irgsp1_rep	CDS	10867868	10867926	.	-	0	Parent=Os03t0306200-01
Chr03	irgsp1_rep	CDS	10866864	10867059	.	-	1	Parent=Os03t0306200-01
Chr03	irgsp1_rep	three_prime_UTR	10866500	10866863	.	-	.	Parent=Os03t0306200-01
Chr03	irgsp1_rep	mRNA	10882686	10883062	.	-	.	ID=Os03t0306302-00;Name=Os03t0306302-00;Locus_id=Os03g0306302;Note=Hypothetical conserved gene.;Transcript_evidence=DQ245981 (DDBJ);ORF_evidence=Q10MJ9 (UniProt);TENOR=Os03t0306302-00;KEGG=Os03t0306302-00
Chr03	irgsp1_rep	five_prime_UTR	10883046	10883062	.	-	.	Parent=Os03t0306302-00
Chr03	irgsp1_rep	CDS	10882686	10883045	.	-	0	Parent=Os03t0306302-00
Chr03	irgsp1_rep	mRNA	10890004	10893861	.	-	.	ID=Os03t0306400-01;Name=Os03t0306400-01;Locus_id=Os03g0306400;Oryzabase Gene Symbol Synonym(s)=OsLonP1%2C LONP1;Oryzabase Gene Name Synonym(s)=Lon protease 1%2C LON PROTEASE 1;Note=Similar to Lon protease homolog%2C mitochondrial.;Transcript_evidence=AK288546 (DDBJ%2C Best hit);ORF_evidence=A2YQ56 (UniProt);NIAS_FLcDNA=J090046I04;Oryzabase=20040;TENOR=Os03t0306400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	10893640	10893861	.	-	0	Parent=Os03t0306400-01
Chr03	irgsp1_rep	three_prime_UTR	10890004	10893639	.	-	.	Parent=Os03t0306400-01
Chr03	irgsp1_rep	mRNA	10905602	10907007	.	+	.	ID=Os03t0306700-01;Name=Os03t0306700-01;Locus_id=Os03g0306700;CGSNL Gene Symbol=BZIP27;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 27;Oryzabase Gene Symbol Synonym(s)=OsbZIP27;Oryzabase Gene Name Synonym(s)=bZIP transcription factor 27;Note=Conserved hypothetical protein.;Transcript_evidence=AK109929 (DDBJ%2C Best hit);ORF_evidence=A3AH67 (UniProt);NIAS_FLcDNA=002-151-H09;Oryzabase=10115;TENOR=Os03t0306700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	10905602	10906279	.	+	.	Parent=Os03t0306700-01
Chr03	irgsp1_rep	CDS	10906280	10906882	.	+	0	Parent=Os03t0306700-01
Chr03	irgsp1_rep	three_prime_UTR	10906883	10907007	.	+	.	Parent=Os03t0306700-01
Chr03	irgsp1_rep	mRNA	10910568	10911189	.	+	.	ID=Os03t0306800-01;Name=Os03t0306800-01;Locus_id=Os03g0306800;Oryzabase Gene Symbol Synonym(s)=OsCP12;Oryzabase Gene Name Synonym(s)=chloroplast protein 12%2C Calvin cycle protein CP12;Note=Similar to CP12 (Fragment).;Transcript_evidence=AK103722 (DDBJ%2C Best hit);ORF_evidence=B7XB92 (UniProt);InterPro=Domain of unknown function CP12 (IPR003823);NIAS_FLcDNA=J033138B13;Oryzabase=15291;Expression=AK103722;TENOR=Os03t0306800-01;KEGG=Os03t0306800-01
Chr03	irgsp1_rep	five_prime_UTR	10910568	10910607	.	+	.	Parent=Os03t0306800-01
Chr03	irgsp1_rep	CDS	10910608	10911003	.	+	0	Parent=Os03t0306800-01
Chr03	irgsp1_rep	three_prime_UTR	10911004	10911189	.	+	.	Parent=Os03t0306800-01
Chr03	irgsp1_rep	mRNA	10911701	10913611	.	-	.	ID=Os03t0306900-01;Name=Os03t0306900-01;Locus_id=Os03g0306900;Note=Haem oxygenase-like%2C multi-helical domain containing protein.;Transcript_evidence=AK073626 (DDBJ%2C Best hit);ORF_evidence=B6TPF2 (UniProt);InterPro=TENA/THI-4 protein/Coenzyme PQQ biosynthesis protein C domain (IPR004305),Haem oxygenase-like%2C multi-helical (IPR016084);NIAS_FLcDNA=J033050J24;Expression=AK073626;TENOR=Os03t0306900-01;KEGG=Os03t0306900-01
Chr03	irgsp1_rep	five_prime_UTR	10913526	10913611	.	-	.	Parent=Os03t0306900-01
Chr03	irgsp1_rep	CDS	10913355	10913525	.	-	0	Parent=Os03t0306900-01
Chr03	irgsp1_rep	CDS	10912284	10912498	.	-	0	Parent=Os03t0306900-01
Chr03	irgsp1_rep	CDS	10911893	10912208	.	-	1	Parent=Os03t0306900-01
Chr03	irgsp1_rep	three_prime_UTR	10911701	10911892	.	-	.	Parent=Os03t0306900-01
Chr03	irgsp1_rep	mRNA	10911697	10912437	.	-	.	ID=Os03t0306900-02;Name=Os03t0306900-02;Locus_id=Os03g0306900;Note=Similar to Seed maturation protein PM36.;Transcript_evidence=AK063807 (DDBJ%2C Best hit);ORF_evidence=B6TPF2 (UniProt);InterPro=TENA/THI-4 protein/Coenzyme PQQ biosynthesis protein C domain (IPR004305),Haem oxygenase-like%2C multi-helical (IPR016084);NIAS_FLcDNA=001-121-G04;Expression=AK063807;TENOR=Os03t0306900-02;KEGG=Os03t0306900-02
Chr03	irgsp1_rep	five_prime_UTR	10912436	10912437	.	-	.	Parent=Os03t0306900-02
Chr03	irgsp1_rep	CDS	10912284	10912435	.	-	0	Parent=Os03t0306900-02
Chr03	irgsp1_rep	CDS	10911893	10912208	.	-	1	Parent=Os03t0306900-02
Chr03	irgsp1_rep	three_prime_UTR	10911697	10911892	.	-	.	Parent=Os03t0306900-02
Chr03	irgsp1_rep	mRNA	10913852	10916716	.	+	.	ID=Os03t0307000-01;Name=Os03t0307000-01;Locus_id=Os03g0307000;Note=Conserved hypothetical protein.;Transcript_evidence=AK243201 (DDBJ%2C Best hit);ORF_evidence=NP_001049892.2 (RefSeq);NIAS_FLcDNA=J100040M24;TENOR=Os03t0307000-01;KEGG=Os03t0307000-01
Chr03	irgsp1_rep	five_prime_UTR	10913852	10913906	.	+	.	Parent=Os03t0307000-01
Chr03	irgsp1_rep	CDS	10913907	10913979	.	+	0	Parent=Os03t0307000-01
Chr03	irgsp1_rep	CDS	10915694	10916385	.	+	2	Parent=Os03t0307000-01
Chr03	irgsp1_rep	three_prime_UTR	10916386	10916716	.	+	.	Parent=Os03t0307000-01
Chr03	irgsp1_rep	mRNA	10918332	10925898	.	+	.	ID=Os03t0307100-01;Name=Os03t0307100-01;Locus_id=Os03g0307100;Oryzabase Gene Symbol Synonym(s)=OsPOP7%2C POP7;Oryzabase Gene Name Synonym(s)=Prolyl Oligopeptidase 7%2C PROLYL OLIGOPEPTIDASE 7;Note=Peptidase S9A%2C oligopeptidase%2C N-terminal beta-propeller domain containing protein.;Transcript_evidence=AK102205 (DDBJ%2C Best hit);ORF_evidence=XP_002882118.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type peptidase activity (GO:0008236);InterPro=Peptidase S9%2C prolyl oligopeptidase%2C catalytic domain (IPR001375),Six-bladed beta-propeller%2C TolB-like (IPR011042);NIAS_FLcDNA=J033087G11;Oryzabase=20015;Expression=AK102205;TENOR=Os03t0307100-01;KEGG=Os03t0307100-01
Chr03	irgsp1_rep	five_prime_UTR	10918332	10918346	.	+	.	Parent=Os03t0307100-01
Chr03	irgsp1_rep	CDS	10918347	10918593	.	+	0	Parent=Os03t0307100-01
Chr03	irgsp1_rep	CDS	10919123	10919339	.	+	2	Parent=Os03t0307100-01
Chr03	irgsp1_rep	CDS	10919462	10919572	.	+	1	Parent=Os03t0307100-01
Chr03	irgsp1_rep	CDS	10919727	10919772	.	+	1	Parent=Os03t0307100-01
Chr03	irgsp1_rep	CDS	10919856	10919965	.	+	0	Parent=Os03t0307100-01
Chr03	irgsp1_rep	CDS	10920038	10920541	.	+	1	Parent=Os03t0307100-01
Chr03	irgsp1_rep	CDS	10921578	10921706	.	+	1	Parent=Os03t0307100-01
Chr03	irgsp1_rep	CDS	10922046	10922342	.	+	1	Parent=Os03t0307100-01
Chr03	irgsp1_rep	CDS	10922434	10922892	.	+	1	Parent=Os03t0307100-01
Chr03	irgsp1_rep	CDS	10923063	10923128	.	+	1	Parent=Os03t0307100-01
Chr03	irgsp1_rep	CDS	10923236	10923296	.	+	1	Parent=Os03t0307100-01
Chr03	irgsp1_rep	CDS	10923541	10923690	.	+	0	Parent=Os03t0307100-01
Chr03	irgsp1_rep	CDS	10923771	10923908	.	+	0	Parent=Os03t0307100-01
Chr03	irgsp1_rep	CDS	10924637	10924917	.	+	0	Parent=Os03t0307100-01
Chr03	irgsp1_rep	CDS	10925445	10925445	.	+	1	Parent=Os03t0307100-01
Chr03	irgsp1_rep	three_prime_UTR	10925446	10925898	.	+	.	Parent=Os03t0307100-01
Chr03	irgsp1_rep	mRNA	10926469	10927729	.	+	.	ID=Os03t0307200-01;Name=Os03t0307200-01;Locus_id=Os03g0307200;RAP-DB Gene Symbol Synonym(s)=NAS2%2C OsNAS2;RAP-DB Gene Name Synonym(s)=NICOTIANAMINE SYNTHASE 2%2C rice nicotianamine synthase2%2C NA synthase gene 2%2C Nicotianamine synthase 2%2C S-adenosyl-L-methionine:S-adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3-carboxypropyltransferase 2%2C NA synthase 2;CGSNL Gene Symbol=NAS2;CGSNL Gene Name=NICOTIANAMINE SYNTHASE 2;Oryzabase Gene Symbol Synonym(s)=OsNAS2%2C OsNAS1;Oryzabase Gene Name Synonym(s)=rice nicotianamine synthase2%2C NA synthase gene 2%2C Nicotianamine synthase 2%2C S-adenosyl-L-methionine:S-adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3-carboxypropyltransferase 2%2C NA synthase 2;Note=Nicotianamine synthase 2%2C Nicotianamine biosynthesis;Transcript_evidence=AK112011;ORF_evidence=Q10M19;GO=Biological Process: nicotianamine biosynthetic process (GO:0030418),Molecular Function: nicotianamine synthase activity (GO:0030410);InterPro=Nicotianamine synthase (IPR004298),S-adenosyl-L-methionine-dependent methyltransferase-like (IPR029063);NIAS_FLcDNA=006-210-G03;Manual Curation=January 24%2C 2014;Literature_PMID=24251791;Oryzabase=3032;TENOR=Os03t0307200-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	10926469	10926578	.	+	.	Parent=Os03t0307200-01
Chr03	irgsp1_rep	CDS	10926579	10927559	.	+	0	Parent=Os03t0307200-01
Chr03	irgsp1_rep	three_prime_UTR	10927560	10927729	.	+	.	Parent=Os03t0307200-01
Chr03	irgsp1_rep	mRNA	10929507	10930895	.	-	.	ID=Os03t0307300-01;Name=Os03t0307300-01;Locus_id=Os03g0307300;CGSNL Gene Symbol=NAS1;CGSNL Gene Name=NICOTIANAMINE SYNTHASE 1;Oryzabase Gene Symbol Synonym(s)=OsNAS1;Oryzabase Gene Name Synonym(s)=rice nicotianamine synthase1%2C NA synthase gene 1%2C Nicotianamine synthase 1%2C S-adenosyl-L-methionine:S-adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3-carboxypropyltransferase 1;Note=Nicotianamine synthase 1 (EC 2.5.1.43) (S-adenosyl-L-methionine:S- adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3- carboxypropyltransferase 1) (OsNAS1).;Transcript_evidence=AK112069 (DDBJ%2C Best hit);ORF_evidence=Q0DSH9 (UniProt);GO=Biological Process: nicotianamine biosynthetic process (GO:0030418),Molecular Function: nicotianamine synthase activity (GO:0030410);InterPro=Nicotianamine synthase (IPR004298);NIAS_FLcDNA=001-119-H05;Oryzabase=3031;Expression=AK112069;TENOR=Os03t0307300-01;KEGG=Os03t0307300-01 (EC:2.5.1.43)
Chr03	irgsp1_rep	five_prime_UTR	10930789	10930895	.	-	.	Parent=Os03t0307300-01
Chr03	irgsp1_rep	CDS	10929790	10930788	.	-	0	Parent=Os03t0307300-01
Chr03	irgsp1_rep	three_prime_UTR	10929507	10929789	.	-	.	Parent=Os03t0307300-01
Chr03	irgsp1_rep	mRNA	10932100	10932936	.	-	.	ID=Os03t0307333-01;Name=Os03t0307333-01;Locus_id=Os03g0307333;Note=Hypothetical conserved gene.;Transcript_evidence=AK243676 (DDBJ%2C Best hit);ORF_evidence=B8AMH1 (UniProt);NIAS_FLcDNA=J100090E04;TENOR=Os03t0307333-01;KEGG=Os03t0307333-01
Chr03	irgsp1_rep	five_prime_UTR	10932480	10932936	.	-	.	Parent=Os03t0307333-01
Chr03	irgsp1_rep	CDS	10932396	10932479	.	-	0	Parent=Os03t0307333-01
Chr03	irgsp1_rep	CDS	10932186	10932308	.	-	0	Parent=Os03t0307333-01
Chr03	irgsp1_rep	three_prime_UTR	10932100	10932185	.	-	.	Parent=Os03t0307333-01
Chr03	irgsp1_rep	mRNA	10939242	10944192	.	+	.	ID=Os03t0307400-01;Name=Os03t0307400-01;Locus_id=Os03g0307400;Note=Six-bladed beta-propeller%2C TolB-like domain containing protein.;Transcript_evidence=AK110558 (DDBJ%2C Best hit);ORF_evidence=B9G5Y6 (UniProt);InterPro=Six-bladed beta-propeller%2C TolB-like (IPR011042);NIAS_FLcDNA=002-168-C09;Expression=AK110558;TENOR=Os03t0307400-01;KEGG=Os03t0307400-01
Chr03	irgsp1_rep	CDS	10939242	10939728	.	+	0	Parent=Os03t0307400-01
Chr03	irgsp1_rep	CDS	10943251	10943792	.	+	2	Parent=Os03t0307400-01
Chr03	irgsp1_rep	three_prime_UTR	10943793	10944192	.	+	.	Parent=Os03t0307400-01
Chr03	irgsp1_rep	mRNA	10941622	10942231	.	-	.	ID=Os03t0307500-01;Name=Os03t0307500-01;Locus_id=Os03g0307500;Note=Hypothetical protein.;Transcript_evidence=AK107709 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-132-D08;TENOR=Os03t0307500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	10941859	10942231	.	-	.	Parent=Os03t0307500-01
Chr03	irgsp1_rep	CDS	10941631	10941858	.	-	0	Parent=Os03t0307500-01
Chr03	irgsp1_rep	three_prime_UTR	10941622	10941630	.	-	.	Parent=Os03t0307500-01
Chr03	irgsp1_rep	mRNA	10949519	10951840	.	-	.	ID=Os03t0307600-00;Name=Os03t0307600-00;Locus_id=Os03g0307600;Note=Hypothetical protein.;Transcript_evidence=tplb0053m11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0307600-00
Chr03	irgsp1_rep	five_prime_UTR	10951478	10951840	.	-	.	Parent=Os03t0307600-00
Chr03	irgsp1_rep	five_prime_UTR	10951259	10951397	.	-	.	Parent=Os03t0307600-00
Chr03	irgsp1_rep	five_prime_UTR	10950904	10951097	.	-	.	Parent=Os03t0307600-00
Chr03	irgsp1_rep	five_prime_UTR	10950607	10950818	.	-	.	Parent=Os03t0307600-00
Chr03	irgsp1_rep	five_prime_UTR	10950146	10950519	.	-	.	Parent=Os03t0307600-00
Chr03	irgsp1_rep	CDS	10949561	10950145	.	-	0	Parent=Os03t0307600-00
Chr03	irgsp1_rep	three_prime_UTR	10949519	10949560	.	-	.	Parent=Os03t0307600-00
Chr03	irgsp1_rep	mRNA	10949519	10951832	.	+	.	ID=Os03t0307700-00;Name=Os03t0307700-00;Locus_id=Os03g0307700;Oryzabase Gene Symbol Synonym(s)=OsTBL28%2C TBL28;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 28;Note=Domain of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=AK376385 (DDBJ);ORF_evidence=NP_001049898.2 (RefSeq);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);Oryzabase=21483;TENOR=Os03t0307700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	10949519	10949519	.	+	.	Parent=Os03t0307700-00
Chr03	irgsp1_rep	CDS	10949520	10950538	.	+	0	Parent=Os03t0307700-00
Chr03	irgsp1_rep	CDS	10950630	10950822	.	+	1	Parent=Os03t0307700-00
Chr03	irgsp1_rep	CDS	10950908	10951098	.	+	0	Parent=Os03t0307700-00
Chr03	irgsp1_rep	CDS	10951260	10951418	.	+	1	Parent=Os03t0307700-00
Chr03	irgsp1_rep	CDS	10951502	10951832	.	+	1	Parent=Os03t0307700-00
Chr03	irgsp1_rep	mRNA	10952335	10959678	.	-	.	ID=Os03t0307800-01;Name=Os03t0307800-01;Locus_id=Os03g0307800;RAP-DB Gene Symbol Synonym(s)=IEZ1%2C OsiEZ1%2C OsSET1%2C SET1%2C iEZ1%2C OsEZ1/OsiEZ1%2C OsEZ1%2C EZ1%2C ez1%2C OsSET15%2C SDG718;RAP-DB Gene Name Synonym(s)=ENHANCER OF ZESTE 1%2C indica Enhancer of Zeste 1%2C SET protein 15;CGSNL Gene Symbol=IEZ1;CGSNL Gene Name=ENHANCER OF ZESTE 1;Oryzabase Gene Symbol Synonym(s)=OsiEZ1%2C OsSET1%2C SET1%2C iEZ1%2C OsEZ1/OsiEZ1%2C OsEZ1%2C EZ1%2C ez1%2C OsSET15%2C SDG718%2C DLN84%2C OsDLN84;Oryzabase Gene Name Synonym(s)=indica Enhancer of Zeste 1%2C SET protein 15%2C DLN repressor 84%2C DLN motif protein 84;Note=Polycomb repressive complex2 (PRC2) key subunit%2C Enhancer of zeste [E(z)] genes%2C Short day promotion of flowering;Transcript_evidence=AF407010,HQ881586,AK243493;ORF_evidence=Q8LLD6,Q10MI4;GO=Molecular Function: protein binding (GO:0005515),Cellular Component: PcG protein complex (GO:0031519);InterPro=Histone-lysine N-methyltransferase%2C EZ (IPR025778),CXC domain (IPR026489),SET domain (IPR001214);NIAS_FLcDNA=J100074A10;Manual Curation=June 17%2C 2015;Literature_PMID=12815033,25400654;Oryzabase=8840;TENOR=Os03t0307800-01;KEGG=Os03t0307800-01 (EC:2.1.1.43)
Chr03	irgsp1_rep	five_prime_UTR	10959622	10959678	.	-	.	Parent=Os03t0307800-01
Chr03	irgsp1_rep	CDS	10959571	10959621	.	-	0	Parent=Os03t0307800-01
Chr03	irgsp1_rep	CDS	10959372	10959483	.	-	0	Parent=Os03t0307800-01
Chr03	irgsp1_rep	CDS	10958914	10959250	.	-	2	Parent=Os03t0307800-01
Chr03	irgsp1_rep	CDS	10958176	10958334	.	-	1	Parent=Os03t0307800-01
Chr03	irgsp1_rep	CDS	10957473	10957557	.	-	1	Parent=Os03t0307800-01
Chr03	irgsp1_rep	CDS	10957217	10957354	.	-	0	Parent=Os03t0307800-01
Chr03	irgsp1_rep	CDS	10957050	10957097	.	-	0	Parent=Os03t0307800-01
Chr03	irgsp1_rep	CDS	10956827	10956898	.	-	0	Parent=Os03t0307800-01
Chr03	irgsp1_rep	CDS	10955472	10956121	.	-	0	Parent=Os03t0307800-01
Chr03	irgsp1_rep	CDS	10955233	10955383	.	-	1	Parent=Os03t0307800-01
Chr03	irgsp1_rep	CDS	10953981	10954198	.	-	0	Parent=Os03t0307800-01
Chr03	irgsp1_rep	CDS	10953629	10953760	.	-	1	Parent=Os03t0307800-01
Chr03	irgsp1_rep	CDS	10953355	10953445	.	-	1	Parent=Os03t0307800-01
Chr03	irgsp1_rep	CDS	10953217	10953264	.	-	0	Parent=Os03t0307800-01
Chr03	irgsp1_rep	CDS	10953000	10953128	.	-	0	Parent=Os03t0307800-01
Chr03	irgsp1_rep	CDS	10952831	10952908	.	-	0	Parent=Os03t0307800-01
Chr03	irgsp1_rep	CDS	10952568	10952756	.	-	0	Parent=Os03t0307800-01
Chr03	irgsp1_rep	three_prime_UTR	10952335	10952567	.	-	.	Parent=Os03t0307800-01
Chr03	irgsp1_rep	mRNA	10952446	10955538	.	+	.	ID=Os03t0307850-00;Name=Os03t0307850-00;Locus_id=Os03g0307850;Note=Non-protein coding transcript.;Transcript_evidence=BT009052 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0307850-00
Chr03	irgsp1_rep	exon	10952446	10952749	.	+	.	Parent=Os03t0307850-00
Chr03	irgsp1_rep	exon	10952824	10952901	.	+	.	Parent=Os03t0307850-00
Chr03	irgsp1_rep	exon	10952993	10953134	.	+	.	Parent=Os03t0307850-00
Chr03	irgsp1_rep	exon	10953323	10953428	.	+	.	Parent=Os03t0307850-00
Chr03	irgsp1_rep	exon	10953610	10953762	.	+	.	Parent=Os03t0307850-00
Chr03	irgsp1_rep	exon	10953987	10954233	.	+	.	Parent=Os03t0307850-00
Chr03	irgsp1_rep	exon	10955283	10955385	.	+	.	Parent=Os03t0307850-00
Chr03	irgsp1_rep	exon	10955466	10955538	.	+	.	Parent=Os03t0307850-00
Chr03	irgsp1_rep	mRNA	10959759	10962360	.	+	.	ID=Os03t0307900-01;Name=Os03t0307900-01;Locus_id=Os03g0307900;Note=Conserved hypothetical protein.;Transcript_evidence=AK072469 (DDBJ%2C Best hit);ORF_evidence=NP_001057005.1 (RefSeq);NIAS_FLcDNA=J023122N01;TENOR=Os03t0307900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	10959759	10961486	.	+	.	Parent=Os03t0307900-01
Chr03	irgsp1_rep	CDS	10961487	10961795	.	+	0	Parent=Os03t0307900-01
Chr03	irgsp1_rep	three_prime_UTR	10961796	10962360	.	+	.	Parent=Os03t0307900-01
Chr03	irgsp1_rep	mRNA	10962902	10965786	.	+	.	ID=Os03t0308000-01;Name=Os03t0308000-01;Locus_id=Os03g0308000;CGSNL Gene Symbol=UBC45;CGSNL Gene Name=UBIQUITIN-CONJUGATING ENZYME 45;Oryzabase Gene Symbol Synonym(s)=OsUBC45;Oryzabase Gene Name Synonym(s)=Ubiquitin-conjugating enzyme 45;Note=Ubiquitin-conjugating enzyme/RWD-like domain containing protein.;Transcript_evidence=AK100355 (DDBJ%2C Best hit);ORF_evidence=B6TT84 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135);NIAS_FLcDNA=J023083I20;Oryzabase=19578;Expression=AK100355;TENOR=Os03t0308000-01;KEGG=Os03t0308000-01 (EC:6.3.2.19)
Chr03	irgsp1_rep	five_prime_UTR	10962902	10963008	.	+	.	Parent=Os03t0308000-01
Chr03	irgsp1_rep	CDS	10963009	10963122	.	+	0	Parent=Os03t0308000-01
Chr03	irgsp1_rep	CDS	10963558	10963689	.	+	0	Parent=Os03t0308000-01
Chr03	irgsp1_rep	CDS	10963778	10963862	.	+	0	Parent=Os03t0308000-01
Chr03	irgsp1_rep	CDS	10964780	10964943	.	+	2	Parent=Os03t0308000-01
Chr03	irgsp1_rep	CDS	10965023	10965469	.	+	0	Parent=Os03t0308000-01
Chr03	irgsp1_rep	three_prime_UTR	10965470	10965786	.	+	.	Parent=Os03t0308000-01
Chr03	irgsp1_rep	mRNA	10966803	10969767	.	-	.	ID=Os03t0308100-01;Name=Os03t0308100-01;Locus_id=Os03g0308100;CGSNL Gene Symbol=CLPP5;CGSNL Gene Name=CHLOROPLAST PROTEASE 5;Oryzabase Gene Symbol Synonym(s)=OsClpP5%2C ClpP5%2C OsClp4%2C CLP4;Oryzabase Gene Name Synonym(s)=plastidic caseinolytic protease 5%2C chloroplast Clp 5%2C Clp protease 4;Note=Peptidase S14%2C ClpP family protein.;Transcript_evidence=AK105977 (DDBJ%2C Best hit);ORF_evidence=B9F7Y8 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S14%2C ClpP (IPR001907),Peptidase S14%2C ClpP%2C active site (IPR018215),Peptidase S14/S49 (IPR023562);NIAS_FLcDNA=001-205-F08;Oryzabase=13361;TENOR=Os03t0308100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	10969676	10969767	.	-	.	Parent=Os03t0308100-01
Chr03	irgsp1_rep	CDS	10969575	10969675	.	-	0	Parent=Os03t0308100-01
Chr03	irgsp1_rep	CDS	10969402	10969491	.	-	1	Parent=Os03t0308100-01
Chr03	irgsp1_rep	CDS	10969159	10969282	.	-	1	Parent=Os03t0308100-01
Chr03	irgsp1_rep	CDS	10968985	10969077	.	-	0	Parent=Os03t0308100-01
Chr03	irgsp1_rep	CDS	10968490	10968535	.	-	0	Parent=Os03t0308100-01
Chr03	irgsp1_rep	CDS	10968335	10968407	.	-	2	Parent=Os03t0308100-01
Chr03	irgsp1_rep	CDS	10967645	10967679	.	-	1	Parent=Os03t0308100-01
Chr03	irgsp1_rep	CDS	10967464	10967552	.	-	2	Parent=Os03t0308100-01
Chr03	irgsp1_rep	CDS	10967048	10967245	.	-	0	Parent=Os03t0308100-01
Chr03	irgsp1_rep	three_prime_UTR	10966803	10967047	.	-	.	Parent=Os03t0308100-01
Chr03	irgsp1_rep	mRNA	10966826	10969697	.	-	.	ID=Os03t0308100-02;Name=Os03t0308100-02;Locus_id=Os03g0308100;CGSNL Gene Symbol=CLPP5;CGSNL Gene Name=CHLOROPLAST PROTEASE 5;Oryzabase Gene Symbol Synonym(s)=OsClpP5%2C ClpP5%2C OsClp4%2C CLP4;Oryzabase Gene Name Synonym(s)=plastidic caseinolytic protease 5%2C chloroplast Clp 5%2C Clp protease 4;Note=Peptidase S14%2C ClpP family protein.;Transcript_evidence=AK099107 (DDBJ%2C Best hit);ORF_evidence=B9F7Y8 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S14%2C ClpP (IPR001907),Peptidase S14%2C ClpP%2C active site (IPR018215),Peptidase S14/S49 (IPR023562);NIAS_FLcDNA=J023031C24;Oryzabase=13361;Expression=AK099107;TENOR=Os03t0308100-02;KEGG=Os03t0308100-02 (EC:3.4.21.92)
Chr03	irgsp1_rep	five_prime_UTR	10969676	10969697	.	-	.	Parent=Os03t0308100-02
Chr03	irgsp1_rep	CDS	10969575	10969675	.	-	0	Parent=Os03t0308100-02
Chr03	irgsp1_rep	CDS	10969402	10969491	.	-	1	Parent=Os03t0308100-02
Chr03	irgsp1_rep	CDS	10969159	10969282	.	-	1	Parent=Os03t0308100-02
Chr03	irgsp1_rep	CDS	10968985	10969077	.	-	0	Parent=Os03t0308100-02
Chr03	irgsp1_rep	CDS	10968490	10968535	.	-	0	Parent=Os03t0308100-02
Chr03	irgsp1_rep	CDS	10968335	10968407	.	-	2	Parent=Os03t0308100-02
Chr03	irgsp1_rep	CDS	10967645	10967679	.	-	1	Parent=Os03t0308100-02
Chr03	irgsp1_rep	CDS	10967464	10967552	.	-	2	Parent=Os03t0308100-02
Chr03	irgsp1_rep	CDS	10967048	10967245	.	-	0	Parent=Os03t0308100-02
Chr03	irgsp1_rep	three_prime_UTR	10966826	10967047	.	-	.	Parent=Os03t0308100-02
Chr03	irgsp1_rep	mRNA	10966803	10969724	.	-	.	ID=Os03t0308100-03;Name=Os03t0308100-03;Locus_id=Os03g0308100;CGSNL Gene Symbol=CLPP5;CGSNL Gene Name=CHLOROPLAST PROTEASE 5;Oryzabase Gene Symbol Synonym(s)=OsClpP5%2C ClpP5%2C OsClp4%2C CLP4;Oryzabase Gene Name Synonym(s)=plastidic caseinolytic protease 5%2C chloroplast Clp 5%2C Clp protease 4;Note=Peptidase S14%2C ClpP family protein.;Transcript_evidence=AK060518 (DDBJ%2C Best hit);ORF_evidence=B9F7Y8 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S14%2C ClpP (IPR001907),Peptidase S14%2C ClpP%2C active site (IPR018215),Peptidase S14/S49 (IPR023562);NIAS_FLcDNA=001-020-B09;Oryzabase=13361;TENOR=Os03t0308100-03
Chr03	irgsp1_rep	five_prime_UTR	10969676	10969724	.	-	.	Parent=Os03t0308100-03
Chr03	irgsp1_rep	CDS	10969575	10969675	.	-	0	Parent=Os03t0308100-03
Chr03	irgsp1_rep	CDS	10969402	10969491	.	-	1	Parent=Os03t0308100-03
Chr03	irgsp1_rep	CDS	10969159	10969282	.	-	1	Parent=Os03t0308100-03
Chr03	irgsp1_rep	CDS	10968985	10969077	.	-	0	Parent=Os03t0308100-03
Chr03	irgsp1_rep	CDS	10968490	10968535	.	-	0	Parent=Os03t0308100-03
Chr03	irgsp1_rep	CDS	10968335	10968407	.	-	2	Parent=Os03t0308100-03
Chr03	irgsp1_rep	CDS	10967645	10967679	.	-	1	Parent=Os03t0308100-03
Chr03	irgsp1_rep	CDS	10967464	10967552	.	-	2	Parent=Os03t0308100-03
Chr03	irgsp1_rep	CDS	10967048	10967245	.	-	0	Parent=Os03t0308100-03
Chr03	irgsp1_rep	three_prime_UTR	10966803	10967047	.	-	.	Parent=Os03t0308100-03
Chr03	irgsp1_rep	mRNA	10970819	10979238	.	-	.	ID=Os03t0308200-01;Name=Os03t0308200-01;Locus_id=Os03g0308200;RAP-DB Gene Symbol Synonym(s)=NRL2%2C SRL2;RAP-DB Gene Name Synonym(s)=NARROW AND ROLLED LEAF 2%2C SEMI-ROLLED LEAF 2%2C Semi-Rolled Leaf2;CGSNL Gene Symbol=SRL2;CGSNL Gene Name=SEMI-ROLLED LEAF 2;Oryzabase Gene Symbol Synonym(s)=NRL2%2C OsSRL2%2C OsNRL2;Oryzabase Gene Name Synonym(s)=semi-rolled leaf2%2C semi-rolled leaf 2%2C narrow and rolled leaf 2;Note=Modulation of leaf rolling%2C Regulation of abaxial side cell differentiation%2C Regulation of leaf shape%2C male fertility and seed size;Transcript_evidence=AK072741;ORF_evidence=Q10MI0;GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023136H15;Manual Curation=May 26%2C 2017;Literature_PMID=27762074,26873975;Oryzabase=20946;Expression=AK072741;TENOR=Os03t0308200-01;KEGG=Os03t0308200-01
Chr03	irgsp1_rep	five_prime_UTR	10978987	10979238	.	-	.	Parent=Os03t0308200-01
Chr03	irgsp1_rep	five_prime_UTR	10977773	10977823	.	-	.	Parent=Os03t0308200-01
Chr03	irgsp1_rep	CDS	10977638	10977772	.	-	0	Parent=Os03t0308200-01
Chr03	irgsp1_rep	CDS	10977319	10977393	.	-	0	Parent=Os03t0308200-01
Chr03	irgsp1_rep	CDS	10977100	10977215	.	-	0	Parent=Os03t0308200-01
Chr03	irgsp1_rep	CDS	10976883	10976994	.	-	1	Parent=Os03t0308200-01
Chr03	irgsp1_rep	CDS	10976678	10976800	.	-	0	Parent=Os03t0308200-01
Chr03	irgsp1_rep	CDS	10976534	10976581	.	-	0	Parent=Os03t0308200-01
Chr03	irgsp1_rep	CDS	10975948	10976147	.	-	0	Parent=Os03t0308200-01
Chr03	irgsp1_rep	CDS	10975146	10975342	.	-	1	Parent=Os03t0308200-01
Chr03	irgsp1_rep	CDS	10974542	10974822	.	-	2	Parent=Os03t0308200-01
Chr03	irgsp1_rep	CDS	10974190	10974339	.	-	0	Parent=Os03t0308200-01
Chr03	irgsp1_rep	CDS	10973579	10973968	.	-	0	Parent=Os03t0308200-01
Chr03	irgsp1_rep	CDS	10973136	10973285	.	-	0	Parent=Os03t0308200-01
Chr03	irgsp1_rep	CDS	10972940	10973015	.	-	0	Parent=Os03t0308200-01
Chr03	irgsp1_rep	CDS	10972736	10972860	.	-	2	Parent=Os03t0308200-01
Chr03	irgsp1_rep	CDS	10972326	10972517	.	-	0	Parent=Os03t0308200-01
Chr03	irgsp1_rep	CDS	10972060	10972200	.	-	0	Parent=Os03t0308200-01
Chr03	irgsp1_rep	CDS	10971773	10971907	.	-	0	Parent=Os03t0308200-01
Chr03	irgsp1_rep	CDS	10971330	10971530	.	-	0	Parent=Os03t0308200-01
Chr03	irgsp1_rep	CDS	10971105	10971224	.	-	0	Parent=Os03t0308200-01
Chr03	irgsp1_rep	three_prime_UTR	10970819	10971104	.	-	.	Parent=Os03t0308200-01
Chr03	irgsp1_rep	mRNA	10970763	10973236	.	-	.	ID=Os03t0308200-02;Name=Os03t0308200-02;Locus_id=Os03g0308200;CGSNL Gene Symbol=SRL2;CGSNL Gene Name=SEMI-ROLLED LEAF 2;Oryzabase Gene Symbol Synonym(s)=NRL2%2C OsSRL2%2C OsNRL2;Oryzabase Gene Name Synonym(s)=semi-rolled leaf2%2C semi-rolled leaf 2%2C narrow and rolled leaf 2;Note=Similar to ATP-dependent Clp protease proteolytic subunit.;Transcript_evidence=AK062228 (DDBJ%2C Best hit);ORF_evidence=B8AMH6 (UniProt);NIAS_FLcDNA=001-047-D02;Oryzabase=20946;Expression=AK062228;TENOR=Os03t0308200-02;KEGG=Os03t0308200-02
Chr03	irgsp1_rep	five_prime_UTR	10973235	10973236	.	-	.	Parent=Os03t0308200-02
Chr03	irgsp1_rep	CDS	10973136	10973234	.	-	0	Parent=Os03t0308200-02
Chr03	irgsp1_rep	CDS	10972940	10973015	.	-	0	Parent=Os03t0308200-02
Chr03	irgsp1_rep	CDS	10972736	10972860	.	-	2	Parent=Os03t0308200-02
Chr03	irgsp1_rep	CDS	10972326	10972517	.	-	0	Parent=Os03t0308200-02
Chr03	irgsp1_rep	CDS	10972060	10972200	.	-	0	Parent=Os03t0308200-02
Chr03	irgsp1_rep	CDS	10971773	10971907	.	-	0	Parent=Os03t0308200-02
Chr03	irgsp1_rep	CDS	10971330	10971530	.	-	0	Parent=Os03t0308200-02
Chr03	irgsp1_rep	CDS	10971105	10971224	.	-	0	Parent=Os03t0308200-02
Chr03	irgsp1_rep	three_prime_UTR	10970763	10971104	.	-	.	Parent=Os03t0308200-02
Chr03	irgsp1_rep	mRNA	10984278	10988399	.	+	.	ID=Os03t0308500-01;Name=Os03t0308500-01;Locus_id=Os03g0308500;Oryzabase Gene Symbol Synonym(s)=OsRH24;Oryzabase Gene Name Synonym(s)=RNA helicase 24;Note=DEAD-like helicase%2C N-terminal domain containing protein.;Transcript_evidence=AK103891 (DDBJ%2C Best hit);ORF_evidence=NP_001147596.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=RNA helicase%2C ATP-dependent%2C DEAD-box%2C conserved site (IPR000629),Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=J033150D22;Oryzabase=19138;Expression=AK103891;TENOR=Os03t0308500-01;KEGG=Os03t0308500-01 (EC:3.6.4.13)
Chr03	irgsp1_rep	five_prime_UTR	10984278	10984379	.	+	.	Parent=Os03t0308500-01
Chr03	irgsp1_rep	CDS	10984380	10984953	.	+	0	Parent=Os03t0308500-01
Chr03	irgsp1_rep	CDS	10986100	10987328	.	+	2	Parent=Os03t0308500-01
Chr03	irgsp1_rep	CDS	10987524	10987560	.	+	0	Parent=Os03t0308500-01
Chr03	irgsp1_rep	CDS	10987646	10988066	.	+	2	Parent=Os03t0308500-01
Chr03	irgsp1_rep	CDS	10988177	10988228	.	+	1	Parent=Os03t0308500-01
Chr03	irgsp1_rep	three_prime_UTR	10988229	10988399	.	+	.	Parent=Os03t0308500-01
Chr03	irgsp1_rep	mRNA	10989050	10990188	.	+	.	ID=Os03t0308600-01;Name=Os03t0308600-01;Locus_id=Os03g0308600;Note=Conserved hypothetical protein.;Transcript_evidence=AK070495 (DDBJ%2C Best hit);ORF_evidence=B8AMH7 (UniProt);NIAS_FLcDNA=J023052A01;TENOR=Os03t0308600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	10989050	10989247	.	+	0	Parent=Os03t0308600-01
Chr03	irgsp1_rep	CDS	10989350	10989394	.	+	0	Parent=Os03t0308600-01
Chr03	irgsp1_rep	CDS	10989473	10989919	.	+	0	Parent=Os03t0308600-01
Chr03	irgsp1_rep	three_prime_UTR	10989920	10990188	.	+	.	Parent=Os03t0308600-01
Chr03	irgsp1_rep	mRNA	10990771	10992403	.	+	.	ID=Os03t0308700-00;Name=Os03t0308700-00;Locus_id=Os03g0308700;Note=Conserved hypothetical protein.;Transcript_evidence=AK361640 (DDBJ);ORF_evidence=B9F828 (UniProt);TENOR=Os03t0308700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	10990771	10991115	.	+	0	Parent=Os03t0308700-00
Chr03	irgsp1_rep	CDS	10991270	10991314	.	+	0	Parent=Os03t0308700-00
Chr03	irgsp1_rep	CDS	10991416	10992039	.	+	0	Parent=Os03t0308700-00
Chr03	irgsp1_rep	CDS	10992113	10992403	.	+	0	Parent=Os03t0308700-00
Chr03	irgsp1_rep	mRNA	10992876	10997554	.	-	.	ID=Os03t0308800-01;Name=Os03t0308800-01;Locus_id=Os03g0308800;Oryzabase Gene Symbol Synonym(s)=OsTPR;Oryzabase Gene Name Synonym(s)=tetratrico peptide repeat (TPR) domain containing protein;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK068534 (DDBJ%2C Best hit);ORF_evidence=NP_188329.1 (RefSeq);GO=Biological Process: RNA processing (GO:0006396),Cellular Component: intracellular (GO:0005622),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=RNA-processing protein%2C HAT helix (IPR003107),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J013154D15;Oryzabase=23145;Expression=AK068534;TENOR=Os03t0308800-01;KEGG=Os03t0308800-01
Chr03	irgsp1_rep	five_prime_UTR	10997505	10997554	.	-	.	Parent=Os03t0308800-01
Chr03	irgsp1_rep	CDS	10997106	10997504	.	-	0	Parent=Os03t0308800-01
Chr03	irgsp1_rep	CDS	10996738	10996881	.	-	0	Parent=Os03t0308800-01
Chr03	irgsp1_rep	CDS	10995841	10996146	.	-	0	Parent=Os03t0308800-01
Chr03	irgsp1_rep	CDS	10995683	10995742	.	-	0	Parent=Os03t0308800-01
Chr03	irgsp1_rep	CDS	10995094	10995339	.	-	0	Parent=Os03t0308800-01
Chr03	irgsp1_rep	CDS	10994263	10994373	.	-	0	Parent=Os03t0308800-01
Chr03	irgsp1_rep	CDS	10993825	10994001	.	-	0	Parent=Os03t0308800-01
Chr03	irgsp1_rep	CDS	10993157	10993594	.	-	0	Parent=Os03t0308800-01
Chr03	irgsp1_rep	three_prime_UTR	10992876	10993156	.	-	.	Parent=Os03t0308800-01
Chr03	irgsp1_rep	mRNA	10992850	10997553	.	-	.	ID=Os03t0308800-02;Name=Os03t0308800-02;Locus_id=Os03g0308800;Oryzabase Gene Symbol Synonym(s)=OsTPR;Oryzabase Gene Name Synonym(s)=tetratrico peptide repeat (TPR) domain containing protein;Note=Hypothetical conserved gene.;Transcript_evidence=AK066789 (DDBJ%2C Best hit);ORF_evidence=A2XFV9 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Cellular Component: intracellular (GO:0005622),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=RNA-processing protein%2C HAT helix (IPR003107),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J013083O07;Oryzabase=23145;Expression=AK066789;TENOR=Os03t0308800-02;KEGG=Os03t0308800-02
Chr03	irgsp1_rep	five_prime_UTR	10997505	10997553	.	-	.	Parent=Os03t0308800-02
Chr03	irgsp1_rep	CDS	10997106	10997504	.	-	0	Parent=Os03t0308800-02
Chr03	irgsp1_rep	CDS	10996738	10996881	.	-	0	Parent=Os03t0308800-02
Chr03	irgsp1_rep	CDS	10995841	10996146	.	-	0	Parent=Os03t0308800-02
Chr03	irgsp1_rep	CDS	10995743	10995745	.	-	0	Parent=Os03t0308800-02
Chr03	irgsp1_rep	three_prime_UTR	10995683	10995742	.	-	.	Parent=Os03t0308800-02
Chr03	irgsp1_rep	three_prime_UTR	10994263	10995339	.	-	.	Parent=Os03t0308800-02
Chr03	irgsp1_rep	three_prime_UTR	10993825	10994001	.	-	.	Parent=Os03t0308800-02
Chr03	irgsp1_rep	three_prime_UTR	10992850	10993594	.	-	.	Parent=Os03t0308800-02
Chr03	irgsp1_rep	mRNA	10992851	10996014	.	-	.	ID=Os03t0308800-03;Name=Os03t0308800-03;Locus_id=Os03g0308800;Oryzabase Gene Symbol Synonym(s)=OsTPR;Oryzabase Gene Name Synonym(s)=tetratrico peptide repeat (TPR) domain containing protein;Note=Hypothetical conserved gene.;Transcript_evidence=AK060285 (DDBJ%2C Best hit);ORF_evidence=A2XFV9 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Cellular Component: intracellular (GO:0005622),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=RNA-processing protein%2C HAT helix (IPR003107),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=001-006-C05;Oryzabase=23145;Expression=AK060285;TENOR=Os03t0308800-03;KEGG=Os03t0308800-03
Chr03	irgsp1_rep	CDS	10995841	10996014	.	-	0	Parent=Os03t0308800-03
Chr03	irgsp1_rep	CDS	10995683	10995742	.	-	0	Parent=Os03t0308800-03
Chr03	irgsp1_rep	CDS	10995094	10995339	.	-	0	Parent=Os03t0308800-03
Chr03	irgsp1_rep	CDS	10994263	10994373	.	-	0	Parent=Os03t0308800-03
Chr03	irgsp1_rep	CDS	10993825	10994001	.	-	0	Parent=Os03t0308800-03
Chr03	irgsp1_rep	CDS	10993157	10993594	.	-	0	Parent=Os03t0308800-03
Chr03	irgsp1_rep	three_prime_UTR	10992851	10993156	.	-	.	Parent=Os03t0308800-03
Chr03	irgsp1_rep	mRNA	10998989	10999602	.	-	.	ID=Os03t0308850-00;Name=Os03t0308850-00;Locus_id=Os03g0308850;Note=Similar to Fip1 motif family protein%2C expressed.;Transcript_evidence=EU948240 (DDBJ);ORF_evidence=Q10MH2 (UniProt);TENOR=Os03t0308850-00;KEGG=Os03t0308850-00
Chr03	irgsp1_rep	CDS	10999000	10999602	.	-	0	Parent=Os03t0308850-00
Chr03	irgsp1_rep	three_prime_UTR	10998989	10998999	.	-	.	Parent=Os03t0308850-00
Chr03	irgsp1_rep	mRNA	11003793	11006469	.	-	.	ID=Os03t0308900-01;Name=Os03t0308900-01;Locus_id=Os03g0308900;Note=Similar to Fip1 motif family protein%2C expressed.;Transcript_evidence=AK064183 (DDBJ%2C Best hit);ORF_evidence=Q10MH2 (UniProt);InterPro=Pre-mRNA polyadenylation factor Fip1 (IPR007854);NIAS_FLcDNA=002-104-B09;TENOR=Os03t0308900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	11006381	11006469	.	-	.	Parent=Os03t0308900-01
Chr03	irgsp1_rep	CDS	11005979	11006380	.	-	0	Parent=Os03t0308900-01
Chr03	irgsp1_rep	CDS	11005456	11005577	.	-	0	Parent=Os03t0308900-01
Chr03	irgsp1_rep	CDS	11005051	11005177	.	-	1	Parent=Os03t0308900-01
Chr03	irgsp1_rep	CDS	11004894	11004950	.	-	0	Parent=Os03t0308900-01
Chr03	irgsp1_rep	CDS	11004732	11004818	.	-	0	Parent=Os03t0308900-01
Chr03	irgsp1_rep	CDS	11004547	11004645	.	-	0	Parent=Os03t0308900-01
Chr03	irgsp1_rep	CDS	11004389	11004471	.	-	0	Parent=Os03t0308900-01
Chr03	irgsp1_rep	CDS	11003793	11004287	.	-	1	Parent=Os03t0308900-01
Chr03	irgsp1_rep	mRNA	11007566	11011794	.	-	.	ID=Os03t0309000-01;Name=Os03t0309000-01;Locus_id=Os03g0309000;Note=Virulence factor%2C pectin lyase fold family protein.;Transcript_evidence=AK070071 (DDBJ%2C Best hit);ORF_evidence=B8AMH9 (UniProt);GO=Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome c-552/DMSO reductase-like%2C haem-binding domain (IPR019020);NIAS_FLcDNA=J023044B08;Expression=AK070071;TENOR=Os03t0309000-01;KEGG=Os03t0309000-01
Chr03	irgsp1_rep	five_prime_UTR	11011705	11011794	.	-	.	Parent=Os03t0309000-01
Chr03	irgsp1_rep	CDS	11011447	11011704	.	-	0	Parent=Os03t0309000-01
Chr03	irgsp1_rep	CDS	11011058	11011125	.	-	0	Parent=Os03t0309000-01
Chr03	irgsp1_rep	CDS	11010460	11010526	.	-	1	Parent=Os03t0309000-01
Chr03	irgsp1_rep	CDS	11010058	11010212	.	-	0	Parent=Os03t0309000-01
Chr03	irgsp1_rep	CDS	11009899	11009969	.	-	1	Parent=Os03t0309000-01
Chr03	irgsp1_rep	CDS	11009692	11009760	.	-	2	Parent=Os03t0309000-01
Chr03	irgsp1_rep	CDS	11009008	11009108	.	-	2	Parent=Os03t0309000-01
Chr03	irgsp1_rep	CDS	11007905	11008204	.	-	0	Parent=Os03t0309000-01
Chr03	irgsp1_rep	three_prime_UTR	11007566	11007904	.	-	.	Parent=Os03t0309000-01
Chr03	irgsp1_rep	mRNA	11020152	11028141	.	+	.	ID=Os03t0309200-01;Name=Os03t0309200-01;Locus_id=Os03g0309200;CGSNL Gene Symbol=PHYB;CGSNL Gene Name=PHYTOCHROME B;Oryzabase Gene Symbol Synonym(s)=phyB%2C PHYB1%2C OsPHYB%2C OsphyB%2C OsYHB%2C YHB%2C OsPHYB/OsYHB;Oryzabase Gene Name Synonym(s)=PhytoChromeB%2C PhytoChrome B;Note=Similar to PhytoChrome B.;Transcript_evidence=AK071993 (DDBJ%2C Best hit);ORF_evidence=B9F830 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: signal transduction (GO:0007165),Biological Process: detection of visible light (GO:0009584),Biological Process: red%2C far-red light phototransduction (GO:0009585),Biological Process: protein-tetrapyrrole linkage (GO:0017006),Biological Process: peptidyl-histidine phosphorylation (GO:0018106),Biological Process: protein-Chromophore linkage (GO:0018298),Cellular Component: membrane (GO:0016020),Molecular Function: two-component sensor activity (GO:0000155),Molecular Function: protein histidine kinase activity (GO:0004673),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: G-protein coupled photoreceptor activity (GO:0008020),Molecular Function: photoreceptor activity (GO:0009881),Molecular Function: protein homodimerization activity (GO:0042803);InterPro=PAS (IPR000014),PhytoChrome (IPR001294),GAF (IPR003018),ATPase-like%2C ATP-binding domain (IPR003594),Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain (IPR003661),Signal transduction histidine kinase%2C core (IPR005467),Signal transduction histidine kinase%2C homodimeric (IPR009082),PhytoChrome A/B/C/D/E (IPR012129),PhytoChrome%2C central region (IPR013515),PhytoChrome Chromophore binding site (IPR013516),PAS fold-2 (IPR013654),PAS fold (IPR013767),PhytoChrome Chromophore attachment domain (IPR016132);NIAS_FLcDNA=J013093E19;Oryzabase=6317;Expression=AK071993;TENOR=Os03t0309200-01;KEGG=Os03t0309200-01
Chr03	irgsp1_rep	five_prime_UTR	11020152	11020263	.	+	.	Parent=Os03t0309200-01
Chr03	irgsp1_rep	CDS	11020264	11020297	.	+	0	Parent=Os03t0309200-01
Chr03	irgsp1_rep	CDS	11020519	11022522	.	+	2	Parent=Os03t0309200-01
Chr03	irgsp1_rep	CDS	11022921	11023728	.	+	2	Parent=Os03t0309200-01
Chr03	irgsp1_rep	CDS	11024846	11025139	.	+	1	Parent=Os03t0309200-01
Chr03	irgsp1_rep	CDS	11027477	11027699	.	+	1	Parent=Os03t0309200-01
Chr03	irgsp1_rep	three_prime_UTR	11027700	11028141	.	+	.	Parent=Os03t0309200-01
Chr03	irgsp1_rep	mRNA	11020131	11028178	.	+	.	ID=Os03t0309200-02;Name=Os03t0309200-02;Locus_id=Os03g0309200;RAP-DB Gene Symbol Synonym(s)=PHYB%2C phyB;RAP-DB Gene Name Synonym(s)=PhytoChrome B;CGSNL Gene Symbol=PHYB;CGSNL Gene Name=PHYTOCHROME B;Oryzabase Gene Symbol Synonym(s)=phyB%2C PHYB1%2C OsPHYB%2C OsphyB%2C OsYHB%2C YHB%2C OsPHYB/OsYHB;Oryzabase Gene Name Synonym(s)=PhytoChromeB%2C PhytoChrome B;Note=PhytoChrome B%2C Control of deetiolation and flowering%2C Transduction of the night break (NB) signal to inhibit flowering%2C Regulation of critical day length;Transcript_evidence=AB109892;ORF_evidence=Q10MG9;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Biological Process: signal transduction (GO:0007165),Biological Process: detection of visible light (GO:0009584),Biological Process: red%2C far-red light phototransduction (GO:0009585),Biological Process: protein-tetrapyrrole linkage (GO:0017006),Biological Process: protein-Chromophore linkage (GO:0018298),Molecular Function: phosphorelay sensor kinase activity (GO:0000155),Molecular Function: protein binding (GO:0005515),Molecular Function: photoreceptor activity (GO:0009881),Molecular Function: protein homodimerization activity (GO:0042803);InterPro=PhytoChrome (IPR001294),PhytoChrome A/B/C/D/E (IPR012129),PAS fold-2 (IPR013654),PAS domain (IPR000014),GAF domain-like (IPR029016),GAF domain (IPR003018),PhytoChrome Chromophore attachment domain (IPR016132),PhytoChrome%2C central region (IPR013515),PAS fold (IPR013767),Signal transduction histidine kinase%2C dimerisation/phosphoacceptor domain (IPR003661),Histidine kinase domain (IPR005467),Histidine kinase-like ATPase%2C C-terminal domain (IPR003594),PhytoChrome Chromophore binding site (IPR013516);NIAS_FLcDNA=001-121-H04 (truncated);Manual Curation=July 25%2C 2017;Literature_PMID=21512732,16278346,16272430;Oryzabase=6317;Expression=AK063814;TENOR=Os03t0309200-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	11020131	11020331	.	+	.	Parent=Os03t0309200-02
Chr03	irgsp1_rep	CDS	11020332	11022522	.	+	0	Parent=Os03t0309200-02
Chr03	irgsp1_rep	CDS	11022921	11023728	.	+	2	Parent=Os03t0309200-02
Chr03	irgsp1_rep	CDS	11024846	11025139	.	+	1	Parent=Os03t0309200-02
Chr03	irgsp1_rep	CDS	11027477	11027699	.	+	1	Parent=Os03t0309200-02
Chr03	irgsp1_rep	three_prime_UTR	11027700	11028178	.	+	.	Parent=Os03t0309200-02
Chr03	irgsp1_rep	mRNA	11030608	11031233	.	-	.	ID=Os03t0309250-00;Name=Os03t0309250-00;Locus_id=Os03g0309250;Note=Hypothetical gene.;Transcript_evidence=AK251801 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0309250-00;KEGG=Os03t0309250-00
Chr03	irgsp1_rep	five_prime_UTR	11031046	11031233	.	-	.	Parent=Os03t0309250-00
Chr03	irgsp1_rep	CDS	11030821	11031045	.	-	0	Parent=Os03t0309250-00
Chr03	irgsp1_rep	three_prime_UTR	11030608	11030820	.	-	.	Parent=Os03t0309250-00
Chr03	irgsp1_rep	mRNA	11031736	11032591	.	+	.	ID=Os03t0309300-00;Name=Os03t0309300-00;Locus_id=Os03g0309300;Note=Hypothetical protein.;Transcript_evidence=AK360624 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0309300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	11031736	11032591	.	+	0	Parent=Os03t0309300-00
Chr03	irgsp1_rep	mRNA	11033522	11035542	.	-	.	ID=Os03t0309400-01;Name=Os03t0309400-01;Locus_id=Os03g0309400;CGSNL Gene Symbol=PME1;CGSNL Gene Name=PECTIN METHYLESTERASE 1;Oryzabase Gene Symbol Synonym(s)=OsPME11%2C OsPME1;Oryzabase Gene Name Synonym(s)=pectin methylesterase 11%2C Pectin Methyl Esterase 1;Note=Pectin lyase fold domain containing protein.;Transcript_evidence=AK100728 (DDBJ%2C Best hit);ORF_evidence=C6TJY2 (UniProt);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=J023117F04;Oryzabase=13175;Expression=AK100728;TENOR=Os03t0309400-01;KEGG=Os03t0309400-01
Chr03	irgsp1_rep	five_prime_UTR	11035483	11035542	.	-	.	Parent=Os03t0309400-01
Chr03	irgsp1_rep	CDS	11035217	11035482	.	-	0	Parent=Os03t0309400-01
Chr03	irgsp1_rep	CDS	11034811	11034973	.	-	1	Parent=Os03t0309400-01
Chr03	irgsp1_rep	CDS	11034491	11034697	.	-	0	Parent=Os03t0309400-01
Chr03	irgsp1_rep	CDS	11034149	11034393	.	-	0	Parent=Os03t0309400-01
Chr03	irgsp1_rep	CDS	11033858	11034014	.	-	1	Parent=Os03t0309400-01
Chr03	irgsp1_rep	three_prime_UTR	11033522	11033857	.	-	.	Parent=Os03t0309400-01
Chr03	irgsp1_rep	mRNA	11048496	11050803	.	+	.	ID=Os03t0309800-01;Name=Os03t0309800-01;Locus_id=Os03g0309800;Note=Similar to PPR2.;Transcript_evidence=AK106141 (DDBJ%2C Best hit),AK060922 (DDBJ%2C Best hit),AK098942 (DDBJ%2C Best hit);ORF_evidence=Q7Y1W6 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-207-G09,001-035-H05,J013043D15;TENOR=Os03t0309800-01
Chr03	irgsp1_rep	five_prime_UTR	11048496	11048549	.	+	.	Parent=Os03t0309800-01
Chr03	irgsp1_rep	CDS	11048550	11048945	.	+	0	Parent=Os03t0309800-01
Chr03	irgsp1_rep	CDS	11049468	11050577	.	+	0	Parent=Os03t0309800-01
Chr03	irgsp1_rep	three_prime_UTR	11050578	11050803	.	+	.	Parent=Os03t0309800-01
Chr03	irgsp1_rep	mRNA	11048516	11053446	.	+	.	ID=Os03t0309800-02;Name=Os03t0309800-02;Locus_id=Os03g0309800;Note=Similar to PPR2.;Transcript_evidence=AK111624 (DDBJ%2C Best hit),AK111530 (DDBJ%2C Best hit);ORF_evidence=Q7Y1W6 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013108I11,J013024C10;TENOR=Os03t0309800-02
Chr03	irgsp1_rep	five_prime_UTR	11048516	11048549	.	+	.	Parent=Os03t0309800-02
Chr03	irgsp1_rep	CDS	11048550	11048945	.	+	0	Parent=Os03t0309800-02
Chr03	irgsp1_rep	CDS	11049468	11050577	.	+	0	Parent=Os03t0309800-02
Chr03	irgsp1_rep	three_prime_UTR	11050578	11050593	.	+	.	Parent=Os03t0309800-02
Chr03	irgsp1_rep	three_prime_UTR	11050993	11051161	.	+	.	Parent=Os03t0309800-02
Chr03	irgsp1_rep	three_prime_UTR	11051775	11053446	.	+	.	Parent=Os03t0309800-02
Chr03	irgsp1_rep	mRNA	11059852	11062156	.	+	.	ID=Os03t0310000-01;Name=Os03t0310000-01;Locus_id=Os03g0310000;CGSNL Gene Symbol=GELP46;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 46;Oryzabase Gene Symbol Synonym(s)=OsGELP46%2C OsGELP46a%2C OsGELP46b;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 46;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK060625 (DDBJ%2C Best hit);ORF_evidence=Q10MF9 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=001-026-G08;Oryzabase=10996;Expression=AK060625;TENOR=Os03t0310000-01;KEGG=Os03t0310000-01
Chr03	irgsp1_rep	five_prime_UTR	11059852	11060034	.	+	.	Parent=Os03t0310000-01
Chr03	irgsp1_rep	CDS	11060035	11060284	.	+	0	Parent=Os03t0310000-01
Chr03	irgsp1_rep	CDS	11060554	11060681	.	+	2	Parent=Os03t0310000-01
Chr03	irgsp1_rep	CDS	11061004	11061249	.	+	0	Parent=Os03t0310000-01
Chr03	irgsp1_rep	CDS	11061414	11061669	.	+	0	Parent=Os03t0310000-01
Chr03	irgsp1_rep	CDS	11061777	11062000	.	+	2	Parent=Os03t0310000-01
Chr03	irgsp1_rep	three_prime_UTR	11062001	11062156	.	+	.	Parent=Os03t0310000-01
Chr03	irgsp1_rep	mRNA	11068996	11071051	.	+	.	ID=Os03t0310400-01;Name=Os03t0310400-01;Locus_id=Os03g0310400;Note=Crotonase%2C core domain containing protein.;Transcript_evidence=AK068241 (DDBJ%2C Best hit);ORF_evidence=NP_001149527.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Crotonase%2C core (IPR001753);NIAS_FLcDNA=J013147K24;Expression=AK068241;TENOR=Os03t0310400-01;KEGG=Os03t0310400-01 (EC:4.2.1.17)
Chr03	irgsp1_rep	five_prime_UTR	11068996	11069082	.	+	.	Parent=Os03t0310400-01
Chr03	irgsp1_rep	CDS	11069083	11069504	.	+	0	Parent=Os03t0310400-01
Chr03	irgsp1_rep	CDS	11070183	11070465	.	+	1	Parent=Os03t0310400-01
Chr03	irgsp1_rep	CDS	11070809	11070910	.	+	0	Parent=Os03t0310400-01
Chr03	irgsp1_rep	three_prime_UTR	11070911	11071051	.	+	.	Parent=Os03t0310400-01
Chr03	irgsp1_rep	mRNA	11078529	11081091	.	+	.	ID=Os03t0310500-01;Name=Os03t0310500-01;Locus_id=Os03g0310500;Note=CAP%2C conserved site domain containing protein.;Transcript_evidence=AK068123 (DDBJ%2C Best hit);ORF_evidence=Q10MF7 (UniProt);NIAS_FLcDNA=J013131A22;Expression=AK068123;TENOR=Os03t0310500-01;KEGG=Os03t0310500-01
Chr03	irgsp1_rep	CDS	11078529	11078677	.	+	0	Parent=Os03t0310500-01
Chr03	irgsp1_rep	CDS	11078926	11079045	.	+	1	Parent=Os03t0310500-01
Chr03	irgsp1_rep	CDS	11079155	11079380	.	+	1	Parent=Os03t0310500-01
Chr03	irgsp1_rep	CDS	11079841	11079900	.	+	0	Parent=Os03t0310500-01
Chr03	irgsp1_rep	CDS	11079989	11080162	.	+	0	Parent=Os03t0310500-01
Chr03	irgsp1_rep	CDS	11080250	11080359	.	+	0	Parent=Os03t0310500-01
Chr03	irgsp1_rep	CDS	11080529	11080694	.	+	1	Parent=Os03t0310500-01
Chr03	irgsp1_rep	three_prime_UTR	11080695	11081091	.	+	.	Parent=Os03t0310500-01
Chr03	irgsp1_rep	mRNA	11081670	11083185	.	-	.	ID=Os03t0310600-01;Name=Os03t0310600-01;Locus_id=Os03g0310600;Note=Protein of unknown function DUF247%2C plant family protein.;Transcript_evidence=AK109731 (DDBJ%2C Best hit);ORF_evidence=A2XFX4 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);NIAS_FLcDNA=002-146-C01;Expression=AK109731;TENOR=Os03t0310600-01;KEGG=Os03t0310600-01
Chr03	irgsp1_rep	five_prime_UTR	11083032	11083185	.	-	.	Parent=Os03t0310600-01
Chr03	irgsp1_rep	CDS	11081769	11083031	.	-	0	Parent=Os03t0310600-01
Chr03	irgsp1_rep	three_prime_UTR	11081670	11081768	.	-	.	Parent=Os03t0310600-01
Chr03	irgsp1_rep	mRNA	11086139	11086842	.	-	.	ID=Os03t0310633-00;Name=Os03t0310633-00;Locus_id=Os03g0310633;Note=Non-protein coding transcript.;Transcript_evidence=BT085296 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0310633-00
Chr03	irgsp1_rep	exon	11086334	11086842	.	-	.	Parent=Os03t0310633-00
Chr03	irgsp1_rep	exon	11086139	11086280	.	-	.	Parent=Os03t0310633-00
Chr03	irgsp1_rep	mRNA	11087036	11087589	.	-	.	ID=Os03t0310666-00;Name=Os03t0310666-00;Locus_id=Os03g0310666;Note=Hypothetical protein.;Transcript_evidence=CT837847 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os03t0310666-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	11087361	11087589	.	-	.	Parent=Os03t0310666-00
Chr03	irgsp1_rep	CDS	11087036	11087360	.	-	0	Parent=Os03t0310666-00
Chr03	irgsp1_rep	mRNA	11090273	11090710	.	+	.	ID=Os03t0310701-00;Name=Os03t0310701-00;Locus_id=Os03g0310701;Note=Conserved hypothetical protein.;Transcript_evidence=CT835221 (DDBJ%2C Best hit);ORF_evidence=NP_001173393.1 (RefSeq);TENOR=Os03t0310701-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	11090273	11090274	.	+	.	Parent=Os03t0310701-00
Chr03	irgsp1_rep	CDS	11090275	11090610	.	+	0	Parent=Os03t0310701-00
Chr03	irgsp1_rep	three_prime_UTR	11090611	11090710	.	+	.	Parent=Os03t0310701-00
Chr03	irgsp1_rep	mRNA	11093574	11094514	.	+	.	ID=Os03t0310800-01;Name=Os03t0310800-01;Locus_id=Os03g0310800;Note=Similar to Hypersensitive reaction associated Ca2+-binding protein.;Transcript_evidence=AK099476 (DDBJ%2C Best hit),AK058663 (DDBJ%2C Best hit);ORF_evidence=NP_001147406.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J013024O19,001-018-G06;Expression=AK099476;TENOR=Os03t0310800-01;KEGG=Os03t0310800-01
Chr03	irgsp1_rep	five_prime_UTR	11093574	11093667	.	+	.	Parent=Os03t0310800-01
Chr03	irgsp1_rep	CDS	11093668	11094189	.	+	0	Parent=Os03t0310800-01
Chr03	irgsp1_rep	three_prime_UTR	11094190	11094514	.	+	.	Parent=Os03t0310800-01
Chr03	irgsp1_rep	mRNA	11094588	11095677	.	-	.	ID=Os03t0310900-01;Name=Os03t0310900-01;Locus_id=Os03g0310900;Note=Conserved hypothetical protein.;Transcript_evidence=AK108200 (DDBJ%2C Best hit);ORF_evidence=B8AMI9 (UniProt);NIAS_FLcDNA=002-140-C11;Expression=AK108200;TENOR=Os03t0310900-01;KEGG=Os03t0310900-01
Chr03	irgsp1_rep	five_prime_UTR	11095633	11095677	.	-	.	Parent=Os03t0310900-01
Chr03	irgsp1_rep	CDS	11094943	11095632	.	-	0	Parent=Os03t0310900-01
Chr03	irgsp1_rep	three_prime_UTR	11094588	11094942	.	-	.	Parent=Os03t0310900-01
Chr03	irgsp1_rep	mRNA	11094854	11095905	.	+	.	ID=Os03t0311000-01;Name=Os03t0311000-01;Locus_id=Os03g0311000;Note=Hypothetical protein.;Transcript_evidence=AK064126 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-102-D07;Expression=AK064126;TENOR=Os03t0311000-01;KEGG=Os03t0311000-01
Chr03	irgsp1_rep	five_prime_UTR	11094854	11094885	.	+	.	Parent=Os03t0311000-01
Chr03	irgsp1_rep	CDS	11094886	11095704	.	+	0	Parent=Os03t0311000-01
Chr03	irgsp1_rep	three_prime_UTR	11095705	11095905	.	+	.	Parent=Os03t0311000-01
Chr03	irgsp1_rep	mRNA	11104554	11109268	.	+	.	ID=Os03t0311300-01;Name=Os03t0311300-01;Locus_id=Os03g0311300;Note=Similar to HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 containing protein%2C expressed.;Transcript_evidence=AK073167 (DDBJ%2C Best hit),AK103974 (DDBJ%2C Best hit),AK109395 (DDBJ%2C Best hit);ORF_evidence=Q10ME8 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity (GO:0016787);InterPro=Haloacid dehalogenase/epoxide hydrolase (IPR005833),Haloacid dehalogenase-like hydrolase (IPR005834),HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 (IPR006402),HAD-like domain (IPR023214);NIAS_FLcDNA=J033020D08,001-016-F05,006-212-F10;TENOR=Os03t0311300-01
Chr03	irgsp1_rep	five_prime_UTR	11104554	11104619	.	+	.	Parent=Os03t0311300-01
Chr03	irgsp1_rep	CDS	11104620	11104992	.	+	0	Parent=Os03t0311300-01
Chr03	irgsp1_rep	CDS	11106382	11106482	.	+	2	Parent=Os03t0311300-01
Chr03	irgsp1_rep	CDS	11106565	11106621	.	+	0	Parent=Os03t0311300-01
Chr03	irgsp1_rep	CDS	11106708	11106802	.	+	0	Parent=Os03t0311300-01
Chr03	irgsp1_rep	CDS	11107592	11107691	.	+	1	Parent=Os03t0311300-01
Chr03	irgsp1_rep	CDS	11108384	11108442	.	+	0	Parent=Os03t0311300-01
Chr03	irgsp1_rep	CDS	11108986	11109121	.	+	1	Parent=Os03t0311300-01
Chr03	irgsp1_rep	three_prime_UTR	11109122	11109268	.	+	.	Parent=Os03t0311300-01
Chr03	irgsp1_rep	mRNA	11104554	11122412	.	+	.	ID=Os03t0311300-02;Name=Os03t0311300-02;Locus_id=Os03g0311300;Note=Similar to HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 containing protein%2C expressed.;Transcript_evidence=AK120958 (DDBJ%2C Best hit);ORF_evidence=B9F834 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity (GO:0016787);InterPro=Haloacid dehalogenase/epoxide hydrolase (IPR005833),Haloacid dehalogenase-like hydrolase (IPR005834),HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 (IPR006402),HAD-like domain (IPR023214);NIAS_FLcDNA=J023039J11;TENOR=Os03t0311300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	11104554	11104619	.	+	.	Parent=Os03t0311300-02
Chr03	irgsp1_rep	CDS	11104620	11104992	.	+	0	Parent=Os03t0311300-02
Chr03	irgsp1_rep	CDS	11106382	11106482	.	+	2	Parent=Os03t0311300-02
Chr03	irgsp1_rep	CDS	11106565	11106621	.	+	0	Parent=Os03t0311300-02
Chr03	irgsp1_rep	CDS	11106708	11106802	.	+	0	Parent=Os03t0311300-02
Chr03	irgsp1_rep	CDS	11107592	11107691	.	+	1	Parent=Os03t0311300-02
Chr03	irgsp1_rep	CDS	11108384	11108442	.	+	0	Parent=Os03t0311300-02
Chr03	irgsp1_rep	CDS	11108986	11109121	.	+	1	Parent=Os03t0311300-02
Chr03	irgsp1_rep	three_prime_UTR	11109122	11109907	.	+	.	Parent=Os03t0311300-02
Chr03	irgsp1_rep	three_prime_UTR	11110934	11111012	.	+	.	Parent=Os03t0311300-02
Chr03	irgsp1_rep	three_prime_UTR	11111365	11111425	.	+	.	Parent=Os03t0311300-02
Chr03	irgsp1_rep	three_prime_UTR	11111534	11111609	.	+	.	Parent=Os03t0311300-02
Chr03	irgsp1_rep	three_prime_UTR	11111852	11111962	.	+	.	Parent=Os03t0311300-02
Chr03	irgsp1_rep	three_prime_UTR	11112767	11112862	.	+	.	Parent=Os03t0311300-02
Chr03	irgsp1_rep	three_prime_UTR	11112997	11113119	.	+	.	Parent=Os03t0311300-02
Chr03	irgsp1_rep	three_prime_UTR	11115862	11116059	.	+	.	Parent=Os03t0311300-02
Chr03	irgsp1_rep	three_prime_UTR	11116183	11116284	.	+	.	Parent=Os03t0311300-02
Chr03	irgsp1_rep	three_prime_UTR	11116682	11116746	.	+	.	Parent=Os03t0311300-02
Chr03	irgsp1_rep	three_prime_UTR	11117764	11117855	.	+	.	Parent=Os03t0311300-02
Chr03	irgsp1_rep	three_prime_UTR	11118650	11121654	.	+	.	Parent=Os03t0311300-02
Chr03	irgsp1_rep	three_prime_UTR	11122041	11122412	.	+	.	Parent=Os03t0311300-02
Chr03	irgsp1_rep	mRNA	11109160	11122368	.	+	.	ID=Os03t0311300-03;Name=Os03t0311300-03;Locus_id=Os03g0311300;Note=NHL repeat domain containing protein.;Transcript_evidence=AK065271 (DDBJ%2C Best hit);ORF_evidence=B9F834 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=NHL repeat (IPR001258),Six-bladed beta-propeller%2C TolB-like (IPR011042),Thioredoxin-like fold (IPR012336),Redoxin (IPR013740);NIAS_FLcDNA=J013002L03;TENOR=Os03t0311300-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	11109160	11109796	.	+	.	Parent=Os03t0311300-03
Chr03	irgsp1_rep	CDS	11109797	11109907	.	+	0	Parent=Os03t0311300-03
Chr03	irgsp1_rep	CDS	11110934	11111012	.	+	0	Parent=Os03t0311300-03
Chr03	irgsp1_rep	CDS	11111365	11111425	.	+	2	Parent=Os03t0311300-03
Chr03	irgsp1_rep	CDS	11111534	11111609	.	+	1	Parent=Os03t0311300-03
Chr03	irgsp1_rep	CDS	11111852	11111962	.	+	0	Parent=Os03t0311300-03
Chr03	irgsp1_rep	CDS	11112767	11112862	.	+	0	Parent=Os03t0311300-03
Chr03	irgsp1_rep	CDS	11112997	11113119	.	+	0	Parent=Os03t0311300-03
Chr03	irgsp1_rep	CDS	11115862	11116059	.	+	0	Parent=Os03t0311300-03
Chr03	irgsp1_rep	CDS	11116183	11116284	.	+	0	Parent=Os03t0311300-03
Chr03	irgsp1_rep	CDS	11116682	11116746	.	+	0	Parent=Os03t0311300-03
Chr03	irgsp1_rep	CDS	11117764	11117855	.	+	1	Parent=Os03t0311300-03
Chr03	irgsp1_rep	CDS	11118650	11118809	.	+	2	Parent=Os03t0311300-03
Chr03	irgsp1_rep	CDS	11119526	11119633	.	+	1	Parent=Os03t0311300-03
Chr03	irgsp1_rep	CDS	11120051	11120054	.	+	1	Parent=Os03t0311300-03
Chr03	irgsp1_rep	three_prime_UTR	11120055	11120143	.	+	.	Parent=Os03t0311300-03
Chr03	irgsp1_rep	three_prime_UTR	11120397	11121654	.	+	.	Parent=Os03t0311300-03
Chr03	irgsp1_rep	three_prime_UTR	11122041	11122368	.	+	.	Parent=Os03t0311300-03
Chr03	irgsp1_rep	mRNA	11115666	11119185	.	-	.	ID=Os03t0311401-01;Name=Os03t0311401-01;Locus_id=Os03g0311401;Note=Conserved hypothetical protein.;Transcript_evidence=AK242599 (DDBJ%2C Best hit);ORF_evidence=NP_001173394.1 (RefSeq);NIAS_FLcDNA=J090013P04;TENOR=Os03t0311401-01;KEGG=Os03t0311401-01
Chr03	irgsp1_rep	five_prime_UTR	11117474	11119185	.	-	.	Parent=Os03t0311401-01
Chr03	irgsp1_rep	CDS	11117150	11117473	.	-	0	Parent=Os03t0311401-01
Chr03	irgsp1_rep	three_prime_UTR	11115666	11117149	.	-	.	Parent=Os03t0311401-01
Chr03	irgsp1_rep	mRNA	11133136	11134225	.	+	.	ID=Os03t0311600-01;Name=Os03t0311600-01;Locus_id=Os03g0311600;Oryzabase Gene Symbol Synonym(s)=OsbHLH176%2C bHLH176;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 176;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=AK103709 (DDBJ%2C Best hit);ORF_evidence=A2XFX7 (UniProt);NIAS_FLcDNA=J033136P14;Oryzabase=22847;Expression=AK103709;TENOR=Os03t0311600-01;KEGG=Os03t0311600-01
Chr03	irgsp1_rep	five_prime_UTR	11133136	11133306	.	+	.	Parent=Os03t0311600-01
Chr03	irgsp1_rep	CDS	11133307	11133924	.	+	0	Parent=Os03t0311600-01
Chr03	irgsp1_rep	three_prime_UTR	11133925	11134225	.	+	.	Parent=Os03t0311600-01
Chr03	irgsp1_rep	mRNA	11156621	11157004	.	+	.	ID=Os03t0312100-00;Name=Os03t0312100-00;Locus_id=Os03g0312100;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10ME2 (UniProt);TENOR=Os03t0312100-00;KEGG=Os03t0312100-00
Chr03	irgsp1_rep	CDS	11156621	11157004	.	+	0	Parent=Os03t0312100-00
Chr03	irgsp1_rep	mRNA	11161068	11164690	.	-	.	ID=Os03t0312300-01;Name=Os03t0312300-01;Locus_id=Os03g0312300;Note=Protein of unknown function DUF26 domain containing protein.;Transcript_evidence=AK111364 (DDBJ%2C Best hit);ORF_evidence=B8AN03 (UniProt);InterPro=Gnk2-homologous domain (IPR002902);NIAS_FLcDNA=002-181-H09;Expression=AK111364;TENOR=Os03t0312300-01;KEGG=Os03t0312300-01
Chr03	irgsp1_rep	five_prime_UTR	11164626	11164690	.	-	.	Parent=Os03t0312300-01
Chr03	irgsp1_rep	CDS	11164264	11164625	.	-	0	Parent=Os03t0312300-01
Chr03	irgsp1_rep	CDS	11161433	11161628	.	-	1	Parent=Os03t0312300-01
Chr03	irgsp1_rep	three_prime_UTR	11161068	11161432	.	-	.	Parent=Os03t0312300-01
Chr03	irgsp1_rep	mRNA	11161151	11164628	.	+	.	ID=Os03t0312350-00;Name=Os03t0312350-00;Locus_id=Os03g0312350;Note=Hypothetical gene.;Transcript_evidence=L14835 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0312350-00;KEGG=Os03t0312350-00
Chr03	irgsp1_rep	five_prime_UTR	11161151	11161360	.	+	.	Parent=Os03t0312350-00
Chr03	irgsp1_rep	CDS	11161361	11161621	.	+	0	Parent=Os03t0312350-00
Chr03	irgsp1_rep	CDS	11164256	11164468	.	+	0	Parent=Os03t0312350-00
Chr03	irgsp1_rep	three_prime_UTR	11164469	11164628	.	+	.	Parent=Os03t0312350-00
Chr03	irgsp1_rep	mRNA	11169863	11171378	.	+	.	ID=Os03t0312500-01;Name=Os03t0312500-01;Locus_id=Os03g0312500;Note=Similar to SKIP interacting protein 23 (Fragment).;Transcript_evidence=AK106657 (DDBJ%2C Best hit);ORF_evidence=B8Q8A9 (UniProt);NIAS_FLcDNA=002-113-G08;TENOR=Os03t0312500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	11169863	11170031	.	+	.	Parent=Os03t0312500-01
Chr03	irgsp1_rep	CDS	11170032	11170319	.	+	0	Parent=Os03t0312500-01
Chr03	irgsp1_rep	three_prime_UTR	11170320	11171378	.	+	.	Parent=Os03t0312500-01
Chr03	irgsp1_rep	mRNA	11169999	11170766	.	+	.	ID=Os03t0312500-02;Name=Os03t0312500-02;Locus_id=Os03g0312500;Note=Similar to SKIP interacting protein 23 (Fragment).;Transcript_evidence=AK109328 (DDBJ%2C Best hit);ORF_evidence=B8Q8A9 (UniProt);NIAS_FLcDNA=002-188-H11;TENOR=Os03t0312500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	11169999	11170031	.	+	.	Parent=Os03t0312500-02
Chr03	irgsp1_rep	CDS	11170032	11170319	.	+	0	Parent=Os03t0312500-02
Chr03	irgsp1_rep	three_prime_UTR	11170320	11170766	.	+	.	Parent=Os03t0312500-02
Chr03	irgsp1_rep	mRNA	11171645	11174607	.	+	.	ID=Os03t0312600-01;Name=Os03t0312600-01;Locus_id=Os03g0312600;Note=Similar to XPA-binding protein 1 (HUSSY-23).;Transcript_evidence=AK073391 (DDBJ%2C Best hit);ORF_evidence=B6TCI7 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),Uncharacterised protein family%2C ATP binding (IPR004130);NIAS_FLcDNA=J033042P15;Expression=AK073391;TENOR=Os03t0312600-01;KEGG=Os03t0312600-01
Chr03	irgsp1_rep	five_prime_UTR	11171645	11171799	.	+	.	Parent=Os03t0312600-01
Chr03	irgsp1_rep	CDS	11171800	11171859	.	+	0	Parent=Os03t0312600-01
Chr03	irgsp1_rep	CDS	11171964	11172090	.	+	0	Parent=Os03t0312600-01
Chr03	irgsp1_rep	CDS	11172226	11172452	.	+	2	Parent=Os03t0312600-01
Chr03	irgsp1_rep	CDS	11173331	11173621	.	+	0	Parent=Os03t0312600-01
Chr03	irgsp1_rep	CDS	11173863	11174068	.	+	0	Parent=Os03t0312600-01
Chr03	irgsp1_rep	CDS	11174160	11174439	.	+	1	Parent=Os03t0312600-01
Chr03	irgsp1_rep	three_prime_UTR	11174440	11174607	.	+	.	Parent=Os03t0312600-01
Chr03	irgsp1_rep	mRNA	11174233	11177750	.	+	.	ID=Os03t0312600-02;Name=Os03t0312600-02;Locus_id=Os03g0312600;Note=Similar to XPA-binding protein 1.;Transcript_evidence=AK063868 (DDBJ%2C Best hit);ORF_evidence=B9F838 (UniProt);NIAS_FLcDNA=001-122-E06;Expression=AK063868;TENOR=Os03t0312600-02;KEGG=Os03t0312600-02
Chr03	irgsp1_rep	CDS	11174233	11174439	.	+	0	Parent=Os03t0312600-02
Chr03	irgsp1_rep	three_prime_UTR	11174440	11174440	.	+	.	Parent=Os03t0312600-02
Chr03	irgsp1_rep	three_prime_UTR	11177489	11177750	.	+	.	Parent=Os03t0312600-02
Chr03	irgsp1_rep	mRNA	11174323	11178005	.	+	.	ID=Os03t0312600-03;Name=Os03t0312600-03;Locus_id=Os03g0312600;Note=Non-protein coding transcript.;Transcript_evidence=AK059348 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-026-C07;TENOR=Os03t0312600-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	exon	11174323	11174440	.	+	.	Parent=Os03t0312600-03
Chr03	irgsp1_rep	exon	11177489	11178005	.	+	.	Parent=Os03t0312600-03
Chr03	irgsp1_rep	mRNA	11181026	11183927	.	+	.	ID=Os03t0313000-01;Name=Os03t0313000-01;Locus_id=Os03g0313000;Oryzabase Gene Name Synonym(s)=NADH dehydrogenase 1 a subcomplex subunit 5;Note=Similar to NADH-ubiquinone oxidoreductase (Fragment).;Transcript_evidence=AK068580 (DDBJ%2C Best hit);ORF_evidence=NP_001147230.1 (RefSeq);GO=Biological Process: respiratory electron transport chain (GO:0022904),Cellular Component: mitochondrial inner membrane (GO:0005743),Molecular Function: oxidoreductase activity%2C acting on NADH or NADPH (GO:0016651);InterPro=ETC complex I subunit (IPR006806);NIAS_FLcDNA=J013157B08;Oryzabase=19064;Expression=AK068580;TENOR=Os03t0313000-01;KEGG=Os03t0313000-01 (EC:1.6.5.3%2C EC:1.6.99.3)
Chr03	irgsp1_rep	five_prime_UTR	11181026	11181118	.	+	.	Parent=Os03t0313000-01
Chr03	irgsp1_rep	CDS	11181119	11181455	.	+	0	Parent=Os03t0313000-01
Chr03	irgsp1_rep	CDS	11183487	11183671	.	+	2	Parent=Os03t0313000-01
Chr03	irgsp1_rep	three_prime_UTR	11183672	11183927	.	+	.	Parent=Os03t0313000-01
Chr03	irgsp1_rep	mRNA	11184218	11189385	.	-	.	ID=Os03t0313100-01;Name=Os03t0313100-01;Locus_id=Os03g0313100;CGSNL Gene Symbol=AP2/EREBP86;CGSNL Gene Name=APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 86;Oryzabase Gene Symbol Synonym(s)=AP2/EREBP#086;Oryzabase Gene Name Synonym(s)=APETALA2/ethylene-responsive element binding protein 86;Note=Similar to ANT-like protein.;Transcript_evidence=AK109839 (DDBJ%2C Best hit);ORF_evidence=Q10MD4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=002-148-D11;Oryzabase=10654;Expression=AK109839;TENOR=Os03t0313100-01;KEGG=Os03t0313100-01
Chr03	irgsp1_rep	five_prime_UTR	11189307	11189385	.	-	.	Parent=Os03t0313100-01
Chr03	irgsp1_rep	CDS	11188888	11189306	.	-	0	Parent=Os03t0313100-01
Chr03	irgsp1_rep	CDS	11188652	11188734	.	-	1	Parent=Os03t0313100-01
Chr03	irgsp1_rep	CDS	11186416	11186424	.	-	2	Parent=Os03t0313100-01
Chr03	irgsp1_rep	CDS	11186239	11186327	.	-	2	Parent=Os03t0313100-01
Chr03	irgsp1_rep	CDS	11185711	11185784	.	-	0	Parent=Os03t0313100-01
Chr03	irgsp1_rep	CDS	11185559	11185609	.	-	1	Parent=Os03t0313100-01
Chr03	irgsp1_rep	CDS	11185396	11185472	.	-	1	Parent=Os03t0313100-01
Chr03	irgsp1_rep	CDS	11184507	11185000	.	-	2	Parent=Os03t0313100-01
Chr03	irgsp1_rep	three_prime_UTR	11184218	11184506	.	-	.	Parent=Os03t0313100-01
Chr03	irgsp1_rep	mRNA	11199350	11205122	.	-	.	ID=Os03t0313300-01;Name=Os03t0313300-01;Locus_id=Os03g0313300;Note=Poly(A) polymerase%2C central region domain containing protein.;Transcript_evidence=AK241138 (DDBJ%2C Best hit);ORF_evidence=Q10MD2 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Biological Process: RNA 3'-end processing (GO:0031123),Biological Process: RNA polyadenylation (GO:0043631),Cellular Component: nucleus (GO:0005634),Molecular Function: RNA binding (GO:0003723),Molecular Function: polynucleotide adenylyltransferase activity (GO:0004652),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=Nucleotidyl transferase domain (IPR002934),Poly(A) polymerase%2C RNA-binding domain (IPR007010),Poly(A) polymerase%2C central domain (IPR007012),Nucleotidyltransferase%2C class I%2C C-terminal-like (IPR011068);NIAS_FLcDNA=J065099G09;TENOR=Os03t0313300-01;KEGG=Os03t0313300-01 (EC:2.7.7.19)
Chr03	irgsp1_rep	five_prime_UTR	11205014	11205122	.	-	.	Parent=Os03t0313300-01
Chr03	irgsp1_rep	CDS	11204753	11205013	.	-	0	Parent=Os03t0313300-01
Chr03	irgsp1_rep	CDS	11204565	11204642	.	-	0	Parent=Os03t0313300-01
Chr03	irgsp1_rep	CDS	11204377	11204475	.	-	0	Parent=Os03t0313300-01
Chr03	irgsp1_rep	CDS	11203288	11203350	.	-	0	Parent=Os03t0313300-01
Chr03	irgsp1_rep	CDS	11203038	11203203	.	-	0	Parent=Os03t0313300-01
Chr03	irgsp1_rep	CDS	11201996	11202105	.	-	2	Parent=Os03t0313300-01
Chr03	irgsp1_rep	CDS	11201680	11201742	.	-	0	Parent=Os03t0313300-01
Chr03	irgsp1_rep	CDS	11201285	11201581	.	-	0	Parent=Os03t0313300-01
Chr03	irgsp1_rep	CDS	11200357	11200521	.	-	0	Parent=Os03t0313300-01
Chr03	irgsp1_rep	CDS	11199932	11200270	.	-	0	Parent=Os03t0313300-01
Chr03	irgsp1_rep	three_prime_UTR	11199350	11199931	.	-	.	Parent=Os03t0313300-01
Chr03	irgsp1_rep	mRNA	11210766	11214945	.	+	.	ID=Os03t0313600-01;Name=Os03t0313600-01;Locus_id=Os03g0313600;CGSNL Gene Symbol=ASL;CGSNL Gene Name=ADENYLOSUCCINATE LYASE;Oryzabase Gene Symbol Synonym(s)=OsASL;Oryzabase Gene Name Synonym(s)=adenylosuccinate lyase;Note=Similar to Genes for GrpE%2C DnaK and DnaJ%2C complete and partial cds. (Fragment).;Transcript_evidence=AK067474 (DDBJ%2C Best hit);ORF_evidence=B4F8Z3 (UniProt);GO=Biological Process: IMP biosynthetic process (GO:0006188),Biological Process: purine ribonucleotide biosynthetic process (GO:0009152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: N6-(1%2C2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity (GO:0004018);InterPro=Fumarate lyase (IPR000362),Adenylosuccinate lyase (IPR004769),L-Aspartase-like (IPR008948),Adenylosuccinate lyase C-terminal/plant (IPR013539),Fumarate lyase%2C conserved site (IPR020557),Lyase 1%2C N-terminal (IPR022761),L-Aspartase-like%2C N-terminal (IPR024083);NIAS_FLcDNA=J013107G14;Oryzabase=22928;Expression=AK067474;TENOR=Os03t0313600-01;KEGG=Os03t0313600-01 (EC:4.3.2.2)
Chr03	irgsp1_rep	five_prime_UTR	11210766	11210905	.	+	.	Parent=Os03t0313600-01
Chr03	irgsp1_rep	CDS	11210906	11211070	.	+	0	Parent=Os03t0313600-01
Chr03	irgsp1_rep	CDS	11211163	11211342	.	+	0	Parent=Os03t0313600-01
Chr03	irgsp1_rep	CDS	11211508	11211723	.	+	0	Parent=Os03t0313600-01
Chr03	irgsp1_rep	CDS	11211805	11211987	.	+	0	Parent=Os03t0313600-01
Chr03	irgsp1_rep	CDS	11212125	11212346	.	+	0	Parent=Os03t0313600-01
Chr03	irgsp1_rep	CDS	11212546	11212662	.	+	0	Parent=Os03t0313600-01
Chr03	irgsp1_rep	CDS	11212794	11212937	.	+	0	Parent=Os03t0313600-01
Chr03	irgsp1_rep	CDS	11213310	11213411	.	+	0	Parent=Os03t0313600-01
Chr03	irgsp1_rep	CDS	11213874	11213942	.	+	0	Parent=Os03t0313600-01
Chr03	irgsp1_rep	CDS	11214395	11214628	.	+	0	Parent=Os03t0313600-01
Chr03	irgsp1_rep	three_prime_UTR	11214629	11214945	.	+	.	Parent=Os03t0313600-01
Chr03	irgsp1_rep	mRNA	11217875	11218517	.	-	.	ID=Os03t0313800-00;Name=Os03t0313800-00;Locus_id=Os03g0313800;Note=Hypothetical conserved gene.;Transcript_evidence=CT835247 (DDBJ%2C Best hit);ORF_evidence=NP_001049930.1 (RefSeq);TENOR=Os03t0313800-00;KEGG=Os03t0313800-00
Chr03	irgsp1_rep	five_prime_UTR	11218364	11218517	.	-	.	Parent=Os03t0313800-00
Chr03	irgsp1_rep	CDS	11218061	11218363	.	-	0	Parent=Os03t0313800-00
Chr03	irgsp1_rep	three_prime_UTR	11217875	11218060	.	-	.	Parent=Os03t0313800-00
Chr03	irgsp1_rep	mRNA	11235446	11235504	.	-	.	ID=Os03t0314000-00;Name=Os03t0314000-00;Locus_id=Os03g0314000;Note=Non-protein coding transcript.;Transcript_evidence=X06284 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0314000-00
Chr03	irgsp1_rep	exon	11235446	11235504	.	-	.	Parent=Os03t0314000-00
Chr03	irgsp1_rep	mRNA	11237786	11241416	.	+	.	ID=Os03t0314100-01;Name=Os03t0314100-01;Locus_id=Os03g0314100;Oryzabase Gene Symbol Synonym(s)=PRP-22;Oryzabase Gene Name Synonym(s)=PRP-22 protein;Note=DEAD-like helicase%2C N-terminal domain containing protein.;Transcript_evidence=AK064890 (DDBJ%2C Best hit);ORF_evidence=NP_001148911.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=Helicase%2C C-terminal (IPR001650),ATPase%2C AAA+ type%2C core (IPR003593),Helicase-associated domain (IPR007502),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J013000K17;Oryzabase=17651;Expression=AK064890;TENOR=Os03t0314100-01;KEGG=Os03t0314100-01 (EC:3.6.4.13)
Chr03	irgsp1_rep	five_prime_UTR	11237786	11237880	.	+	.	Parent=Os03t0314100-01
Chr03	irgsp1_rep	CDS	11237881	11238171	.	+	0	Parent=Os03t0314100-01
Chr03	irgsp1_rep	CDS	11238482	11238669	.	+	0	Parent=Os03t0314100-01
Chr03	irgsp1_rep	CDS	11238813	11240028	.	+	1	Parent=Os03t0314100-01
Chr03	irgsp1_rep	three_prime_UTR	11240029	11240400	.	+	.	Parent=Os03t0314100-01
Chr03	irgsp1_rep	three_prime_UTR	11240479	11240717	.	+	.	Parent=Os03t0314100-01
Chr03	irgsp1_rep	three_prime_UTR	11240800	11240918	.	+	.	Parent=Os03t0314100-01
Chr03	irgsp1_rep	three_prime_UTR	11241006	11241416	.	+	.	Parent=Os03t0314100-01
Chr03	irgsp1_rep	mRNA	11239411	11241426	.	+	.	ID=Os03t0314100-02;Name=Os03t0314100-02;Locus_id=Os03g0314100;Oryzabase Gene Symbol Synonym(s)=PRP-22;Oryzabase Gene Name Synonym(s)=PRP-22 protein;Note=Similar to Predicted protein.;Transcript_evidence=AK060813 (DDBJ%2C Best hit);ORF_evidence=NP_001148911.1 (RefSeq);GO=Molecular Function: helicase activity (GO:0004386);InterPro=Helicase-associated domain (IPR007502);NIAS_FLcDNA=001-033-H05;Oryzabase=17651;Expression=AK060813;TENOR=Os03t0314100-02;KEGG=Os03t0314100-02 (EC:3.6.4.13)
Chr03	irgsp1_rep	CDS	11239411	11239897	.	+	0	Parent=Os03t0314100-02
Chr03	irgsp1_rep	CDS	11240165	11240232	.	+	2	Parent=Os03t0314100-02
Chr03	irgsp1_rep	three_prime_UTR	11240233	11240400	.	+	.	Parent=Os03t0314100-02
Chr03	irgsp1_rep	three_prime_UTR	11240479	11240717	.	+	.	Parent=Os03t0314100-02
Chr03	irgsp1_rep	three_prime_UTR	11240800	11240918	.	+	.	Parent=Os03t0314100-02
Chr03	irgsp1_rep	three_prime_UTR	11241006	11241426	.	+	.	Parent=Os03t0314100-02
Chr03	irgsp1_rep	mRNA	11242262	11247480	.	-	.	ID=Os03t0314200-01;Name=Os03t0314200-01;Locus_id=Os03g0314200;Note=Cas1p-like family protein.;Transcript_evidence=AK100769 (DDBJ%2C Best hit);ORF_evidence=NP_568662.1 (RefSeq);InterPro=Cas1p-like (IPR012419);NIAS_FLcDNA=J023119N22;Expression=AK100769;TENOR=Os03t0314200-01;KEGG=Os03t0314200-01
Chr03	irgsp1_rep	five_prime_UTR	11247366	11247480	.	-	.	Parent=Os03t0314200-01
Chr03	irgsp1_rep	CDS	11247297	11247365	.	-	0	Parent=Os03t0314200-01
Chr03	irgsp1_rep	CDS	11246084	11246175	.	-	0	Parent=Os03t0314200-01
Chr03	irgsp1_rep	CDS	11245719	11245853	.	-	1	Parent=Os03t0314200-01
Chr03	irgsp1_rep	CDS	11245568	11245624	.	-	1	Parent=Os03t0314200-01
Chr03	irgsp1_rep	CDS	11245418	11245490	.	-	1	Parent=Os03t0314200-01
Chr03	irgsp1_rep	CDS	11245060	11245218	.	-	0	Parent=Os03t0314200-01
Chr03	irgsp1_rep	CDS	11244473	11244622	.	-	0	Parent=Os03t0314200-01
Chr03	irgsp1_rep	CDS	11244138	11244393	.	-	0	Parent=Os03t0314200-01
Chr03	irgsp1_rep	CDS	11243932	11244047	.	-	2	Parent=Os03t0314200-01
Chr03	irgsp1_rep	CDS	11243575	11243661	.	-	0	Parent=Os03t0314200-01
Chr03	irgsp1_rep	CDS	11243403	11243491	.	-	0	Parent=Os03t0314200-01
Chr03	irgsp1_rep	CDS	11243248	11243310	.	-	1	Parent=Os03t0314200-01
Chr03	irgsp1_rep	CDS	11243086	11243142	.	-	1	Parent=Os03t0314200-01
Chr03	irgsp1_rep	CDS	11242889	11242985	.	-	1	Parent=Os03t0314200-01
Chr03	irgsp1_rep	CDS	11242652	11242810	.	-	0	Parent=Os03t0314200-01
Chr03	irgsp1_rep	three_prime_UTR	11242262	11242651	.	-	.	Parent=Os03t0314200-01
Chr03	irgsp1_rep	mRNA	11252342	11255305	.	+	.	ID=Os03t0314400-01;Name=Os03t0314400-01;Locus_id=Os03g0314400;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK063446 (DDBJ%2C Best hit);ORF_evidence=A2XFZ4 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-115-F06;Expression=AK063446;TENOR=Os03t0314400-01;KEGG=Os03t0314400-01
Chr03	irgsp1_rep	five_prime_UTR	11252342	11252402	.	+	.	Parent=Os03t0314400-01
Chr03	irgsp1_rep	CDS	11252403	11254349	.	+	0	Parent=Os03t0314400-01
Chr03	irgsp1_rep	three_prime_UTR	11254350	11254419	.	+	.	Parent=Os03t0314400-01
Chr03	irgsp1_rep	three_prime_UTR	11254837	11255305	.	+	.	Parent=Os03t0314400-01
Chr03	irgsp1_rep	mRNA	11252402	11254240	.	-	.	ID=Os03t0314450-00;Name=Os03t0314450-00;Locus_id=Os03g0314450;Note=Hypothetical protein.;Transcript_evidence=tplb0021n11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0314450-00
Chr03	irgsp1_rep	five_prime_UTR	11253692	11254240	.	-	.	Parent=Os03t0314450-00
Chr03	irgsp1_rep	five_prime_UTR	11252721	11253295	.	-	.	Parent=Os03t0314450-00
Chr03	irgsp1_rep	CDS	11252402	11252720	.	-	0	Parent=Os03t0314450-00
Chr03	irgsp1_rep	mRNA	11266821	11270098	.	+	.	ID=Os03t0314500-01;Name=Os03t0314500-01;Locus_id=Os03g0314500;Note=WD40-like Beta Propeller domain containing protein.;Transcript_evidence=AK102644 (DDBJ%2C Best hit),AK065474 (DDBJ%2C Best hit);ORF_evidence=A2XFZ7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40-like Beta Propeller (IPR011659),WD40/YVTN repeat-like-containing domain (IPR015943);NIAS_FLcDNA=J033100G21,J013023F11;TENOR=Os03t0314500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	11266821	11266821	.	+	.	Parent=Os03t0314500-01
Chr03	irgsp1_rep	CDS	11266822	11267449	.	+	0	Parent=Os03t0314500-01
Chr03	irgsp1_rep	CDS	11267823	11268373	.	+	2	Parent=Os03t0314500-01
Chr03	irgsp1_rep	CDS	11268558	11268740	.	+	0	Parent=Os03t0314500-01
Chr03	irgsp1_rep	CDS	11268880	11269078	.	+	0	Parent=Os03t0314500-01
Chr03	irgsp1_rep	CDS	11269167	11269873	.	+	2	Parent=Os03t0314500-01
Chr03	irgsp1_rep	three_prime_UTR	11269874	11270098	.	+	.	Parent=Os03t0314500-01
Chr03	irgsp1_rep	mRNA	11267873	11270046	.	+	.	ID=Os03t0314500-02;Name=Os03t0314500-02;Locus_id=Os03g0314500;Note=Hypothetical conserved gene.;Transcript_evidence=AK061751 (DDBJ%2C Best hit);ORF_evidence=A2XFZ7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40-like Beta Propeller (IPR011659),WD40/YVTN repeat-like-containing domain (IPR015943);NIAS_FLcDNA=001-038-G10;Expression=AK061751;TENOR=Os03t0314500-02;KEGG=Os03t0314500-02
Chr03	irgsp1_rep	CDS	11267873	11268373	.	+	0	Parent=Os03t0314500-02
Chr03	irgsp1_rep	CDS	11268558	11268740	.	+	0	Parent=Os03t0314500-02
Chr03	irgsp1_rep	CDS	11268880	11269078	.	+	0	Parent=Os03t0314500-02
Chr03	irgsp1_rep	CDS	11269167	11269873	.	+	2	Parent=Os03t0314500-02
Chr03	irgsp1_rep	three_prime_UTR	11269874	11270046	.	+	.	Parent=Os03t0314500-02
Chr03	irgsp1_rep	mRNA	11271856	11273210	.	+	.	ID=Os03t0314700-01;Name=Os03t0314700-01;Locus_id=Os03g0314700;CGSNL Gene Symbol=ISC11;CGSNL Gene Name=IRON-SULFUR CLUSTER PROTEIN 11;Oryzabase Gene Symbol Synonym(s)=OsISC11;Oryzabase Gene Name Synonym(s)=Iron-sulfur cluster protein 11;Note=NIF system FeS cluster assembly%2C NifU%2C C-terminal domain containing protein.;Transcript_evidence=AK069184 (DDBJ%2C Best hit);ORF_evidence=B6UGE2 (UniProt);GO=Biological Process: iron-sulfur cluster assembly (GO:0016226),Molecular Function: iron ion binding (GO:0005506),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=NIF system FeS cluster assembly%2C NifU%2C C-terminal (IPR001075);NIAS_FLcDNA=J023009A17;Oryzabase=13426;Expression=AK069184;TENOR=Os03t0314700-01;KEGG=Os03t0314700-01
Chr03	irgsp1_rep	five_prime_UTR	11271856	11271915	.	+	.	Parent=Os03t0314700-01
Chr03	irgsp1_rep	CDS	11271916	11272258	.	+	0	Parent=Os03t0314700-01
Chr03	irgsp1_rep	CDS	11272389	11272531	.	+	2	Parent=Os03t0314700-01
Chr03	irgsp1_rep	CDS	11272606	11272794	.	+	0	Parent=Os03t0314700-01
Chr03	irgsp1_rep	three_prime_UTR	11272795	11273210	.	+	.	Parent=Os03t0314700-01
Chr03	irgsp1_rep	mRNA	11275673	11276614	.	+	.	ID=Os03t0314750-01;Name=Os03t0314750-01;Locus_id=Os03g0314750;Note=Hypothetical conserved gene.;Transcript_evidence=AK241012 (DDBJ%2C Best hit);ORF_evidence=B8AMY7 (UniProt);NIAS_FLcDNA=J065053N14;TENOR=Os03t0314750-01;KEGG=Os03t0314750-01
Chr03	irgsp1_rep	five_prime_UTR	11275673	11275783	.	+	.	Parent=Os03t0314750-01
Chr03	irgsp1_rep	CDS	11275784	11275815	.	+	0	Parent=Os03t0314750-01
Chr03	irgsp1_rep	CDS	11275944	11275998	.	+	1	Parent=Os03t0314750-01
Chr03	irgsp1_rep	CDS	11276113	11276214	.	+	0	Parent=Os03t0314750-01
Chr03	irgsp1_rep	three_prime_UTR	11276215	11276614	.	+	.	Parent=Os03t0314750-01
Chr03	irgsp1_rep	mRNA	11283343	11287893	.	-	.	ID=Os03t0314800-01;Name=Os03t0314800-01;Locus_id=Os03g0314800;CGSNL Gene Symbol=NIN1;CGSNL Gene Name=NEUTRAL/ALKALINE INVERTASE 1;Oryzabase Gene Symbol Synonym(s)=OsNIN1;Oryzabase Gene Name Synonym(s)=neutral/alkaline invertase 1;Note=Plant neutral invertase family protein.;Transcript_evidence=AK103334 (DDBJ%2C Best hit);ORF_evidence=A7LH71 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Plant neutral invertase (IPR006937),Six-hairpin glycosidase-like (IPR008928);NIAS_FLcDNA=J033125P15;Oryzabase=14666;Expression=AK103334;TENOR=Os03t0314800-01;KEGG=Os03t0314800-01
Chr03	irgsp1_rep	five_prime_UTR	11287767	11287893	.	-	.	Parent=Os03t0314800-01
Chr03	irgsp1_rep	CDS	11287128	11287766	.	-	0	Parent=Os03t0314800-01
Chr03	irgsp1_rep	CDS	11285186	11285351	.	-	0	Parent=Os03t0314800-01
Chr03	irgsp1_rep	CDS	11284884	11285095	.	-	2	Parent=Os03t0314800-01
Chr03	irgsp1_rep	CDS	11284260	11284753	.	-	0	Parent=Os03t0314800-01
Chr03	irgsp1_rep	CDS	11284048	11284096	.	-	1	Parent=Os03t0314800-01
Chr03	irgsp1_rep	CDS	11283625	11283951	.	-	0	Parent=Os03t0314800-01
Chr03	irgsp1_rep	three_prime_UTR	11283343	11283624	.	-	.	Parent=Os03t0314800-01
Chr03	irgsp1_rep	mRNA	11283778	11287355	.	+	.	ID=Os03t0315000-00;Name=Os03t0315000-00;Locus_id=Os03g0315000;Note=Non-protein coding transcript.;Transcript_evidence=tplb0038i24 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os03t0315000-00
Chr03	irgsp1_rep	exon	11283778	11283946	.	+	.	Parent=Os03t0315000-00
Chr03	irgsp1_rep	exon	11284040	11284095	.	+	.	Parent=Os03t0315000-00
Chr03	irgsp1_rep	exon	11284259	11284753	.	+	.	Parent=Os03t0315000-00
Chr03	irgsp1_rep	exon	11284884	11285093	.	+	.	Parent=Os03t0315000-00
Chr03	irgsp1_rep	exon	11285184	11285358	.	+	.	Parent=Os03t0315000-00
Chr03	irgsp1_rep	exon	11287134	11287355	.	+	.	Parent=Os03t0315000-00
Chr03	irgsp1_rep	mRNA	11307421	11307836	.	+	.	ID=Os03t0315200-00;Name=Os03t0315200-00;Locus_id=Os03g0315200;Note=Hypothetical conserved gene.;Transcript_evidence=EU973553 (DDBJ);ORF_evidence=B9FC39 (UniProt);TENOR=Os03t0315200-00;KEGG=Os03t0315200-00
Chr03	irgsp1_rep	CDS	11307421	11307720	.	+	0	Parent=Os03t0315200-00
Chr03	irgsp1_rep	three_prime_UTR	11307721	11307836	.	+	.	Parent=Os03t0315200-00
Chr03	irgsp1_rep	mRNA	11326096	11328222	.	-	.	ID=Os03t0315400-01;Name=Os03t0315400-01;Locus_id=Os03g0315400;RAP-DB Gene Symbol Synonym(s)=OsMYB2;Oryzabase Gene Symbol Synonym(s)=OsMYB2%2C MYB2;Note=R2R3-type MYB transcription factor%2C "Salt%2C cold and dehydration tolerance";Transcript_evidence=AK120551;ORF_evidence=Q10MB4;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeobox-like domain superfamily (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930);NIAS_FLcDNA=J013130B13;Manual Curation=October 16%2C 2020;Literature_PMID=22301384;Oryzabase=9969;Expression=AK120551;TENOR=Os03t0315400-01;KEGG=Os03t0315400-01;Subcellular location=nucleus (GO:0005634)
Chr03	irgsp1_rep	five_prime_UTR	11328014	11328222	.	-	.	Parent=Os03t0315400-01
Chr03	irgsp1_rep	CDS	11327857	11328013	.	-	0	Parent=Os03t0315400-01
Chr03	irgsp1_rep	CDS	11326538	11327370	.	-	2	Parent=Os03t0315400-01
Chr03	irgsp1_rep	three_prime_UTR	11326096	11326537	.	-	.	Parent=Os03t0315400-01
Chr03	irgsp1_rep	mRNA	11351502	11355720	.	-	.	ID=Os03t0315800-01;Name=Os03t0315800-01;Locus_id=Os03g0315800;Note=Similar to 30S ribosomal protein S1%2C chloroplast precursor (CS1).;Transcript_evidence=AK065115 (DDBJ%2C Best hit);ORF_evidence=B4FUZ5 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=Ribosomal protein S1%2C RNA-binding domain (IPR003029),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),RNA-binding domain%2C S1 (IPR022967);NIAS_FLcDNA=J013001O08;Expression=AK065115;TENOR=Os03t0315800-01;KEGG=Os03t0315800-01
Chr03	irgsp1_rep	five_prime_UTR	11355678	11355720	.	-	.	Parent=Os03t0315800-01
Chr03	irgsp1_rep	CDS	11355616	11355677	.	-	0	Parent=Os03t0315800-01
Chr03	irgsp1_rep	CDS	11355389	11355566	.	-	1	Parent=Os03t0315800-01
Chr03	irgsp1_rep	CDS	11353433	11353708	.	-	0	Parent=Os03t0315800-01
Chr03	irgsp1_rep	CDS	11352781	11352861	.	-	0	Parent=Os03t0315800-01
Chr03	irgsp1_rep	CDS	11352281	11352562	.	-	0	Parent=Os03t0315800-01
Chr03	irgsp1_rep	CDS	11352084	11352194	.	-	0	Parent=Os03t0315800-01
Chr03	irgsp1_rep	CDS	11351914	11352000	.	-	0	Parent=Os03t0315800-01
Chr03	irgsp1_rep	CDS	11351702	11351797	.	-	0	Parent=Os03t0315800-01
Chr03	irgsp1_rep	three_prime_UTR	11351502	11351701	.	-	.	Parent=Os03t0315800-01
Chr03	irgsp1_rep	mRNA	11351518	11352325	.	-	.	ID=Os03t0315800-02;Name=Os03t0315800-02;Locus_id=Os03g0315800;Note=Similar to 30S ribosomal protein S1 (Fragment).;Transcript_evidence=AK061971 (DDBJ%2C Best hit);ORF_evidence=A6N017 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=Ribosomal protein S1%2C RNA-binding domain (IPR003029),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=001-042-H07;Expression=AK061971;TENOR=Os03t0315800-02;KEGG=Os03t0315800-02
Chr03	irgsp1_rep	CDS	11352281	11352325	.	-	0	Parent=Os03t0315800-02
Chr03	irgsp1_rep	CDS	11352084	11352194	.	-	0	Parent=Os03t0315800-02
Chr03	irgsp1_rep	CDS	11351914	11352000	.	-	0	Parent=Os03t0315800-02
Chr03	irgsp1_rep	CDS	11351702	11351797	.	-	0	Parent=Os03t0315800-02
Chr03	irgsp1_rep	three_prime_UTR	11351518	11351701	.	-	.	Parent=Os03t0315800-02
Chr03	irgsp1_rep	mRNA	11367200	11368889	.	+	.	ID=Os03t0316200-01;Name=Os03t0316200-01;Locus_id=Os03g0316200;RAP-DB Gene Symbol Synonym(s)=OsGolS1;RAP-DB Gene Name Synonym(s)=galactinol synthase 1;CGSNL Gene Symbol=GOLS1;CGSNL Gene Name=GALACTINOL SYNTHASE 1;Oryzabase Gene Symbol Synonym(s)=OsGolS1%2C GolS1%2C OsGolS2%2C GolS2;Oryzabase Gene Name Synonym(s)=galactinol synthase 1%2C galactinol synthase 2;Note=Galactinol synthase;Transcript_evidence=AK071812,AK103958;ORF_evidence=Q10MB0;GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Nucleotide-diphospho-sugar transferases (IPR029044),Glycosyl transferase%2C family 8 (IPR002495);NIAS_FLcDNA=J023113D08,001-015-C01;Manual Curation=December 10%2C 2018;Literature_PMID=30465114;Oryzabase=20445;TENOR=Os03t0316200-01
Chr03	irgsp1_rep	five_prime_UTR	11367200	11367317	.	+	.	Parent=Os03t0316200-01
Chr03	irgsp1_rep	CDS	11367318	11367644	.	+	0	Parent=Os03t0316200-01
Chr03	irgsp1_rep	CDS	11367746	11368069	.	+	0	Parent=Os03t0316200-01
Chr03	irgsp1_rep	CDS	11368172	11368306	.	+	0	Parent=Os03t0316200-01
Chr03	irgsp1_rep	CDS	11368392	11368631	.	+	0	Parent=Os03t0316200-01
Chr03	irgsp1_rep	three_prime_UTR	11368632	11368889	.	+	.	Parent=Os03t0316200-01
Chr03	irgsp1_rep	mRNA	11395982	11398885	.	+	.	ID=Os03t0316900-01;Name=Os03t0316900-01;Locus_id=Os03g0316900;CGSNL Gene Symbol=ABCI15;CGSNL Gene Name=ABC TRANSPORTER I FAMILY MEMBER 15;Oryzabase Gene Symbol Synonym(s)=OsABCI15;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCI subgroup member 15;Note=Similar to NBD-like protein.;Transcript_evidence=AK069044 (DDBJ%2C Best hit);ORF_evidence=NP_195847.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593);NIAS_FLcDNA=J023008D19;Oryzabase=12038;Expression=AK069044;TENOR=Os03t0316900-01;KEGG=Os03t0316900-01
Chr03	irgsp1_rep	five_prime_UTR	11395982	11396070	.	+	.	Parent=Os03t0316900-01
Chr03	irgsp1_rep	CDS	11396071	11396221	.	+	0	Parent=Os03t0316900-01
Chr03	irgsp1_rep	CDS	11396324	11396457	.	+	2	Parent=Os03t0316900-01
Chr03	irgsp1_rep	CDS	11396582	11396699	.	+	0	Parent=Os03t0316900-01
Chr03	irgsp1_rep	CDS	11397894	11397991	.	+	2	Parent=Os03t0316900-01
Chr03	irgsp1_rep	CDS	11398099	11398251	.	+	0	Parent=Os03t0316900-01
Chr03	irgsp1_rep	CDS	11398330	11398407	.	+	0	Parent=Os03t0316900-01
Chr03	irgsp1_rep	CDS	11398489	11398719	.	+	0	Parent=Os03t0316900-01
Chr03	irgsp1_rep	three_prime_UTR	11398720	11398885	.	+	.	Parent=Os03t0316900-01
Chr03	irgsp1_rep	mRNA	11402649	11408087	.	+	.	ID=Os03t0317000-01;Name=Os03t0317000-01;Locus_id=Os03g0317000;Note=Similar to High-glucose-regulated protein 8-like.;Transcript_evidence=AK099818 (DDBJ%2C Best hit);ORF_evidence=B9F851 (UniProt);InterPro=YTH domain (IPR007275);NIAS_FLcDNA=J013100F17;Expression=AK099818;TENOR=Os03t0317000-01;KEGG=Os03t0317000-01
Chr03	irgsp1_rep	five_prime_UTR	11402649	11404029	.	+	.	Parent=Os03t0317000-01
Chr03	irgsp1_rep	CDS	11404030	11404032	.	+	0	Parent=Os03t0317000-01
Chr03	irgsp1_rep	CDS	11404438	11404585	.	+	0	Parent=Os03t0317000-01
Chr03	irgsp1_rep	CDS	11404668	11404741	.	+	2	Parent=Os03t0317000-01
Chr03	irgsp1_rep	CDS	11404848	11405345	.	+	0	Parent=Os03t0317000-01
Chr03	irgsp1_rep	CDS	11405861	11406205	.	+	0	Parent=Os03t0317000-01
Chr03	irgsp1_rep	CDS	11406290	11406502	.	+	0	Parent=Os03t0317000-01
Chr03	irgsp1_rep	CDS	11406781	11407629	.	+	0	Parent=Os03t0317000-01
Chr03	irgsp1_rep	three_prime_UTR	11407630	11408087	.	+	.	Parent=Os03t0317000-01
Chr03	irgsp1_rep	mRNA	11412715	11416313	.	+	.	ID=Os03t0317100-01;Name=Os03t0317100-01;Locus_id=Os03g0317100;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK318555 (DDBJ%2C Best hit);ORF_evidence=Q10MA5 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J075159J07;TENOR=Os03t0317100-01;KEGG=Os03t0317100-01
Chr03	irgsp1_rep	five_prime_UTR	11412715	11412742	.	+	.	Parent=Os03t0317100-01
Chr03	irgsp1_rep	CDS	11412743	11414863	.	+	0	Parent=Os03t0317100-01
Chr03	irgsp1_rep	three_prime_UTR	11414864	11414922	.	+	.	Parent=Os03t0317100-01
Chr03	irgsp1_rep	three_prime_UTR	11415124	11415207	.	+	.	Parent=Os03t0317100-01
Chr03	irgsp1_rep	three_prime_UTR	11415856	11416313	.	+	.	Parent=Os03t0317100-01
Chr03	irgsp1_rep	mRNA	11422308	11423805	.	+	.	ID=Os03t0317300-01;Name=Os03t0317300-01;Locus_id=Os03g0317300;Note=Peptidase A1 domain containing protein.;Transcript_evidence=AK119465 (DDBJ%2C Best hit);ORF_evidence=Q10M98 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=001-134-A02;Expression=AK119465;TENOR=Os03t0317300-01;KEGG=Os03t0317300-01
Chr03	irgsp1_rep	five_prime_UTR	11422308	11422399	.	+	.	Parent=Os03t0317300-01
Chr03	irgsp1_rep	CDS	11422400	11423746	.	+	0	Parent=Os03t0317300-01
Chr03	irgsp1_rep	three_prime_UTR	11423747	11423805	.	+	.	Parent=Os03t0317300-01
Chr03	irgsp1_rep	mRNA	11428922	11429952	.	-	.	ID=Os03t0317700-00;Name=Os03t0317700-00;Locus_id=Os03g0317700;Note=Non-protein coding transcript.;Transcript_evidence=AK360759 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0317700-00
Chr03	irgsp1_rep	exon	11428922	11429952	.	-	.	Parent=Os03t0317700-00
Chr03	irgsp1_rep	mRNA	11449370	11450605	.	+	.	ID=Os03t0317900-00;Name=Os03t0317900-00;Locus_id=Os03g0317900;Note=Similar to Eukaryotic aspartyl protease family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10M98 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);TENOR=Os03t0317900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	11449370	11450605	.	+	0	Parent=Os03t0317900-00
Chr03	irgsp1_rep	mRNA	11449432	11450599	.	-	.	ID=Os03t0318025-00;Name=Os03t0318025-00;Locus_id=Os03g0318025;Note=Hypothetical protein.;Transcript_evidence=AK360759 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0318025-00
Chr03	irgsp1_rep	CDS	11450126	11450599	.	-	0	Parent=Os03t0318025-00
Chr03	irgsp1_rep	three_prime_UTR	11449432	11450125	.	-	.	Parent=Os03t0318025-00
Chr03	irgsp1_rep	mRNA	11459990	11461021	.	-	.	ID=Os03t0318150-00;Name=Os03t0318150-00;Locus_id=Os03g0318150;Note=Hypothetical protein.;Transcript_evidence=AK360759 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0318150-00
Chr03	irgsp1_rep	five_prime_UTR	11461021	11461021	.	-	.	Parent=Os03t0318150-00
Chr03	irgsp1_rep	CDS	11460556	11461020	.	-	0	Parent=Os03t0318150-00
Chr03	irgsp1_rep	three_prime_UTR	11459990	11460555	.	-	.	Parent=Os03t0318150-00
Chr03	irgsp1_rep	mRNA	11467636	11469150	.	+	.	ID=Os03t0318400-01;Name=Os03t0318400-01;Locus_id=Os03g0318400;Note=Peptidase A1 domain containing protein.;Transcript_evidence=AK106440 (DDBJ%2C Best hit);ORF_evidence=Q10M98 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=002-103-D09;Expression=AK106440;TENOR=Os03t0318400-01;KEGG=Os03t0318400-01
Chr03	irgsp1_rep	five_prime_UTR	11467636	11467765	.	+	.	Parent=Os03t0318400-01
Chr03	irgsp1_rep	CDS	11467766	11469070	.	+	0	Parent=Os03t0318400-01
Chr03	irgsp1_rep	three_prime_UTR	11469071	11469150	.	+	.	Parent=Os03t0318400-01
Chr03	irgsp1_rep	mRNA	11469803	11475732	.	-	.	ID=Os03t0318500-01;Name=Os03t0318500-01;Locus_id=Os03g0318500;Oryzabase Gene Symbol Synonym(s)=OsG6PDH5%2C G6PDH5;Oryzabase Gene Name Synonym(s)=d-glucose 6-phosphate dehydrogenase 5%2C glucose-6-phosphate dehydrogenase 4;Note=Similar to Glucose-6-phosphate 1-dehydrogenase%2C chloroplast precursor (EC 1.1.1.49) (G6PD).;Transcript_evidence=AK121967 (DDBJ%2C Best hit);ORF_evidence=B8AN00 (UniProt);GO=Biological Process: glucose metabolic process (GO:0006006),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: glucose-6-phosphate dehydrogenase activity (GO:0004345),Molecular Function: NADP binding (GO:0050661);InterPro=Glucose-6-phosphate dehydrogenase (IPR001282),NAD(P)-binding domain (IPR016040),Glucose-6-phosphate dehydrogenase%2C NAD-binding (IPR022674),Glucose-6-phosphate dehydrogenase%2C C-terminal (IPR022675);NIAS_FLcDNA=J033108F18;Oryzabase=14998;Expression=AK121967;TENOR=Os03t0318500-01;KEGG=Os03t0318500-01 (EC:1.1.1.49)
Chr03	irgsp1_rep	five_prime_UTR	11475669	11475732	.	-	.	Parent=Os03t0318500-01
Chr03	irgsp1_rep	CDS	11475585	11475668	.	-	0	Parent=Os03t0318500-01
Chr03	irgsp1_rep	CDS	11474892	11475111	.	-	0	Parent=Os03t0318500-01
Chr03	irgsp1_rep	CDS	11474391	11474647	.	-	2	Parent=Os03t0318500-01
Chr03	irgsp1_rep	CDS	11473082	11473176	.	-	0	Parent=Os03t0318500-01
Chr03	irgsp1_rep	CDS	11472494	11472608	.	-	1	Parent=Os03t0318500-01
Chr03	irgsp1_rep	CDS	11472149	11472354	.	-	0	Parent=Os03t0318500-01
Chr03	irgsp1_rep	CDS	11471826	11471934	.	-	1	Parent=Os03t0318500-01
Chr03	irgsp1_rep	CDS	11471708	11471748	.	-	0	Parent=Os03t0318500-01
Chr03	irgsp1_rep	CDS	11471067	11471187	.	-	1	Parent=Os03t0318500-01
Chr03	irgsp1_rep	CDS	11470785	11470984	.	-	0	Parent=Os03t0318500-01
Chr03	irgsp1_rep	CDS	11470262	11470462	.	-	1	Parent=Os03t0318500-01
Chr03	irgsp1_rep	CDS	11469948	11470188	.	-	1	Parent=Os03t0318500-01
Chr03	irgsp1_rep	three_prime_UTR	11469803	11469947	.	-	.	Parent=Os03t0318500-01
Chr03	irgsp1_rep	mRNA	11469913	11475690	.	+	.	ID=Os03t0318550-00;Name=Os03t0318550-00;Locus_id=Os03g0318550;Note=Non-protein coding transcript.;Transcript_evidence=tplb0035g11 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os03t0318550-00
Chr03	irgsp1_rep	exon	11469913	11470174	.	+	.	Parent=Os03t0318550-00
Chr03	irgsp1_rep	exon	11470250	11470473	.	+	.	Parent=Os03t0318550-00
Chr03	irgsp1_rep	exon	11470799	11471000	.	+	.	Parent=Os03t0318550-00
Chr03	irgsp1_rep	exon	11471058	11471534	.	+	.	Parent=Os03t0318550-00
Chr03	irgsp1_rep	exon	11471657	11472016	.	+	.	Parent=Os03t0318550-00
Chr03	irgsp1_rep	exon	11472128	11472601	.	+	.	Parent=Os03t0318550-00
Chr03	irgsp1_rep	exon	11473051	11473176	.	+	.	Parent=Os03t0318550-00
Chr03	irgsp1_rep	exon	11474391	11474603	.	+	.	Parent=Os03t0318550-00
Chr03	irgsp1_rep	exon	11474870	11475104	.	+	.	Parent=Os03t0318550-00
Chr03	irgsp1_rep	exon	11475601	11475690	.	+	.	Parent=Os03t0318550-00
Chr03	irgsp1_rep	mRNA	11476096	11481187	.	-	.	ID=Os03t0318600-01;Name=Os03t0318600-01;Locus_id=Os03g0318600;RAP-DB Gene Symbol Synonym(s)=OsTGA3;CGSNL Gene Symbol=BZIP28;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 28;Oryzabase Gene Symbol Synonym(s)=OsbZIP28%2C OsbZIP1%2C OsNIF1%2C OsTGA3%2C TGA3%2C OsTGA3/OsbZIP08;Oryzabase Gene Name Synonym(s)=bZIP transcription factor 28%2C bZIP transcription factor 1;Note=TGA transcription factor%2C bZIP transcription factor%2C Defense response;Transcript_evidence=AK242257;ORF_evidence=Q6IVC3;GO=Biological Process: transcription%2C DNA-templated (GO:0006351),Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA-binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Basic-leucine zipper domain (IPR004827),Transcription factor TGA like domain (IPR025422);NIAS_FLcDNA=J075183E21;Manual Curation=December 27%2C 2018;Literature_PMID=30444888;Oryzabase=10116;TENOR=Os03t0318600-01;KEGG=Os03t0318600-01;Subcellular location=nucleus (GO:0005634)
Chr03	irgsp1_rep	five_prime_UTR	11481043	11481187	.	-	.	Parent=Os03t0318600-01
Chr03	irgsp1_rep	five_prime_UTR	11480296	11480548	.	-	.	Parent=Os03t0318600-01
Chr03	irgsp1_rep	CDS	11480230	11480295	.	-	0	Parent=Os03t0318600-01
Chr03	irgsp1_rep	CDS	11479118	11479198	.	-	0	Parent=Os03t0318600-01
Chr03	irgsp1_rep	CDS	11478972	11479031	.	-	0	Parent=Os03t0318600-01
Chr03	irgsp1_rep	CDS	11477812	11477889	.	-	0	Parent=Os03t0318600-01
Chr03	irgsp1_rep	CDS	11477656	11477707	.	-	0	Parent=Os03t0318600-01
Chr03	irgsp1_rep	CDS	11477284	11477555	.	-	2	Parent=Os03t0318600-01
Chr03	irgsp1_rep	CDS	11476894	11477139	.	-	0	Parent=Os03t0318600-01
Chr03	irgsp1_rep	CDS	11476482	11476628	.	-	0	Parent=Os03t0318600-01
Chr03	irgsp1_rep	three_prime_UTR	11476096	11476481	.	-	.	Parent=Os03t0318600-01
Chr03	irgsp1_rep	mRNA	11497788	11498619	.	+	.	ID=Os03t0319000-01;Name=Os03t0319000-01;Locus_id=Os03g0319000;Oryzabase Gene Symbol Synonym(s)=OsVQ10%2C VQ10;Oryzabase Gene Name Synonym(s)=VQ motif-containing protein 10%2C DEAD-box ATP-dependent RNA helicase 12-like;Note=Similar to VQ motif family protein%2C expressed.;Transcript_evidence=AK070706 (DDBJ%2C Best hit);ORF_evidence=Q10M91 (UniProt);NIAS_FLcDNA=J023063B10;Oryzabase=13626;TENOR=Os03t0319000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	11497788	11497989	.	+	.	Parent=Os03t0319000-01
Chr03	irgsp1_rep	five_prime_UTR	11498081	11498201	.	+	.	Parent=Os03t0319000-01
Chr03	irgsp1_rep	CDS	11498202	11498420	.	+	0	Parent=Os03t0319000-01
Chr03	irgsp1_rep	three_prime_UTR	11498421	11498619	.	+	.	Parent=Os03t0319000-01
Chr03	irgsp1_rep	mRNA	11497903	11498383	.	-	.	ID=Os03t0319050-00;Name=Os03t0319050-00;Locus_id=Os03g0319050;Note=Hypothetical gene.;Transcript_evidence=EU947196 (DDBJ);ORF_evidence=GeneMark;TENOR=Os03t0319050-00;KEGG=Os03t0319050-00
Chr03	irgsp1_rep	CDS	11498162	11498383	.	-	0	Parent=Os03t0319050-00
Chr03	irgsp1_rep	three_prime_UTR	11497903	11498161	.	-	.	Parent=Os03t0319050-00
Chr03	irgsp1_rep	mRNA	11507580	11512308	.	+	.	ID=Os03t0319100-01;Name=Os03t0319100-01;Locus_id=Os03g0319100;Note=Similar to SNF1-related protein kinase regulatory subunit beta-1.;Transcript_evidence=AK101800 (DDBJ%2C Best hit);ORF_evidence=NP_001149540.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=5-AMP-activated protein kinase%2C beta subunit%2C interaction domain (IPR006828);NIAS_FLcDNA=J033066I11;TENOR=Os03t0319100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	11507580	11507729	.	+	.	Parent=Os03t0319100-01
Chr03	irgsp1_rep	CDS	11507730	11507957	.	+	0	Parent=Os03t0319100-01
Chr03	irgsp1_rep	CDS	11510339	11510520	.	+	0	Parent=Os03t0319100-01
Chr03	irgsp1_rep	CDS	11510612	11510774	.	+	1	Parent=Os03t0319100-01
Chr03	irgsp1_rep	CDS	11511592	11511906	.	+	0	Parent=Os03t0319100-01
Chr03	irgsp1_rep	three_prime_UTR	11511907	11512308	.	+	.	Parent=Os03t0319100-01
Chr03	irgsp1_rep	mRNA	11517923	11519347	.	+	.	ID=Os03t0319200-00;Name=Os03t0319200-00;Locus_id=Os03g0319200;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10M89 (UniProt);TENOR=Os03t0319200-00;KEGG=Os03t0319200-00
Chr03	irgsp1_rep	CDS	11517923	11519347	.	+	0	Parent=Os03t0319200-00
Chr03	irgsp1_rep	mRNA	11522676	11524356	.	+	.	ID=Os03t0319300-01;Name=Os03t0319300-01;Locus_id=Os03g0319300;RAP-DB Gene Symbol Synonym(s)=OsCam1-1%2C OsCaM1-1%2C OsCaM1;RAP-DB Gene Name Synonym(s)=calmodulin 1-1;Oryzabase Gene Symbol Synonym(s)=OsCaM1%2C OsCam1-1%2C OsCaM1-1%2C CAM3%2C Cam1-1;Oryzabase Gene Name Synonym(s)=calmodulin 1%2C calmodulin 1-1%2C calmodulin 3;Note=Calmodulin%2C Ca<sup>2+</sup> sensor%2C Ca<sup>2+</sup> signalling%2C Thermotolerance;Transcript_evidence=AK070090,AK059756,AF042840;ORF_evidence=Q0JNS6;GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand domain pair (IPR011992),Phosphoglycolate phosphatase%2C domain 2 (IPR023198),EF-hand domain (IPR002048),EF-Hand 1%2C calcium-binding site (IPR018247);NIAS_FLcDNA=J023040P16,006-203-C05;Manual Curation=December 19%2C 2017;Literature_PMID=22428987,17263873;Oryzabase=9334;Expression=AK070090;TENOR=Os03t0319300-01;KEGG=Os03t0319300-01
Chr03	irgsp1_rep	five_prime_UTR	11522676	11522810	.	+	.	Parent=Os03t0319300-01
Chr03	irgsp1_rep	CDS	11522811	11522886	.	+	0	Parent=Os03t0319300-01
Chr03	irgsp1_rep	CDS	11523717	11524090	.	+	2	Parent=Os03t0319300-01
Chr03	irgsp1_rep	three_prime_UTR	11524091	11524356	.	+	.	Parent=Os03t0319300-01
Chr03	irgsp1_rep	mRNA	11526273	11530306	.	-	.	ID=Os03t0319400-01;Name=Os03t0319400-01;Locus_id=Os03g0319400;RAP-DB Gene Symbol Synonym(s)=CK1%2C OsCK1%2C CIPK31%2C OsCIPK31%2C Os-CIPK3;RAP-DB Gene Name Synonym(s)=CIPK-LIKE PROTEIN 1%2C CBL-interacting protein kinase 31%2C CIPK-like protein 1;CGSNL Gene Symbol=CK1;CGSNL Gene Name=CIPK-LIKE PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsCK1%2C CIPK31%2C OsCIPK31%2C Os-CIPK3;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 31%2C CIPK-like protein 1;Note=Serine/threonine protein kinase%2C Cold stress tolerance%2C Abiotic stresses;Transcript_evidence=AY256847 (Genbank),AK111929 (Genbank);ORF_evidence=Q6X4A2 (UniProt),B3GLZ7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),NAF domain (IPR004041),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),NAF/FISL domain (IPR018451),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-015-H02;Manual Curation=July 12%2C 2010;Literature_PMID=14682618,17535819,20652492;Oryzabase=6116;TENOR=Os03t0319400-01;KEGG=Os03t0319400-01
Chr03	irgsp1_rep	CDS	11530115	11530306	.	-	0	Parent=Os03t0319400-01
Chr03	irgsp1_rep	CDS	11529143	11529205	.	-	0	Parent=Os03t0319400-01
Chr03	irgsp1_rep	CDS	11528964	11529035	.	-	0	Parent=Os03t0319400-01
Chr03	irgsp1_rep	CDS	11528738	11528845	.	-	0	Parent=Os03t0319400-01
Chr03	irgsp1_rep	CDS	11528576	11528656	.	-	0	Parent=Os03t0319400-01
Chr03	irgsp1_rep	CDS	11528429	11528482	.	-	0	Parent=Os03t0319400-01
Chr03	irgsp1_rep	CDS	11528200	11528325	.	-	0	Parent=Os03t0319400-01
Chr03	irgsp1_rep	CDS	11528030	11528119	.	-	0	Parent=Os03t0319400-01
Chr03	irgsp1_rep	CDS	11527614	11527736	.	-	0	Parent=Os03t0319400-01
Chr03	irgsp1_rep	CDS	11527410	11527520	.	-	0	Parent=Os03t0319400-01
Chr03	irgsp1_rep	CDS	11527152	11527265	.	-	0	Parent=Os03t0319400-01
Chr03	irgsp1_rep	CDS	11526959	11527015	.	-	0	Parent=Os03t0319400-01
Chr03	irgsp1_rep	CDS	11526805	11526879	.	-	0	Parent=Os03t0319400-01
Chr03	irgsp1_rep	CDS	11526630	11526713	.	-	0	Parent=Os03t0319400-01
Chr03	irgsp1_rep	three_prime_UTR	11526273	11526629	.	-	.	Parent=Os03t0319400-01
Chr03	irgsp1_rep	mRNA	11526273	11531969	.	-	.	ID=Os03t0319400-02;Name=Os03t0319400-02;Locus_id=Os03g0319400;CGSNL Gene Symbol=CK1;CGSNL Gene Name=CIPK-LIKE PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsCK1%2C CIPK31%2C OsCIPK31%2C Os-CIPK3;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 31%2C CIPK-like protein 1;Note=Similar to CBL-interacting protein kinase 3.;Transcript_evidence=AK111752 (DDBJ%2C Best hit);ORF_evidence=B3GLZ7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023050M21;Oryzabase=6116;TENOR=Os03t0319400-02;KEGG=Os03t0319400-02 (EC:2.7.1.37%2C EC:2.7.11.11)
Chr03	irgsp1_rep	five_prime_UTR	11531881	11531969	.	-	.	Parent=Os03t0319400-02
Chr03	irgsp1_rep	five_prime_UTR	11530307	11530353	.	-	.	Parent=Os03t0319400-02
Chr03	irgsp1_rep	CDS	11529956	11530306	.	-	0	Parent=Os03t0319400-02
Chr03	irgsp1_rep	three_prime_UTR	11529560	11529955	.	-	.	Parent=Os03t0319400-02
Chr03	irgsp1_rep	three_prime_UTR	11529143	11529205	.	-	.	Parent=Os03t0319400-02
Chr03	irgsp1_rep	three_prime_UTR	11528964	11529035	.	-	.	Parent=Os03t0319400-02
Chr03	irgsp1_rep	three_prime_UTR	11528738	11528845	.	-	.	Parent=Os03t0319400-02
Chr03	irgsp1_rep	three_prime_UTR	11528576	11528656	.	-	.	Parent=Os03t0319400-02
Chr03	irgsp1_rep	three_prime_UTR	11528429	11528482	.	-	.	Parent=Os03t0319400-02
Chr03	irgsp1_rep	three_prime_UTR	11528200	11528325	.	-	.	Parent=Os03t0319400-02
Chr03	irgsp1_rep	three_prime_UTR	11528030	11528119	.	-	.	Parent=Os03t0319400-02
Chr03	irgsp1_rep	three_prime_UTR	11527614	11527736	.	-	.	Parent=Os03t0319400-02
Chr03	irgsp1_rep	three_prime_UTR	11527410	11527520	.	-	.	Parent=Os03t0319400-02
Chr03	irgsp1_rep	three_prime_UTR	11527152	11527265	.	-	.	Parent=Os03t0319400-02
Chr03	irgsp1_rep	three_prime_UTR	11526959	11527015	.	-	.	Parent=Os03t0319400-02
Chr03	irgsp1_rep	three_prime_UTR	11526805	11526879	.	-	.	Parent=Os03t0319400-02
Chr03	irgsp1_rep	three_prime_UTR	11526273	11526713	.	-	.	Parent=Os03t0319400-02
Chr03	irgsp1_rep	mRNA	11526525	11528991	.	-	.	ID=Os03t0319400-03;Name=Os03t0319400-03;Locus_id=Os03g0319400;CGSNL Gene Symbol=CK1;CGSNL Gene Name=CIPK-LIKE PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsCK1%2C CIPK31%2C OsCIPK31%2C Os-CIPK3;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 31%2C CIPK-like protein 1;Note=Similar to CBL-interacting protein kinase 3.;Transcript_evidence=AK111920 (DDBJ%2C Best hit);ORF_evidence=B3GLZ7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),NAF domain (IPR004041),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),NAF/FISL domain (IPR018451);NIAS_FLcDNA=001-011-E09;Oryzabase=6116;TENOR=Os03t0319400-03;KEGG=Os03t0319400-03 (EC:2.7.11.11)
Chr03	irgsp1_rep	five_prime_UTR	11528991	11528991	.	-	.	Parent=Os03t0319400-03
Chr03	irgsp1_rep	CDS	11528964	11528990	.	-	0	Parent=Os03t0319400-03
Chr03	irgsp1_rep	CDS	11528738	11528845	.	-	0	Parent=Os03t0319400-03
Chr03	irgsp1_rep	CDS	11528576	11528656	.	-	0	Parent=Os03t0319400-03
Chr03	irgsp1_rep	CDS	11528429	11528482	.	-	0	Parent=Os03t0319400-03
Chr03	irgsp1_rep	CDS	11528200	11528325	.	-	0	Parent=Os03t0319400-03
Chr03	irgsp1_rep	CDS	11528030	11528119	.	-	0	Parent=Os03t0319400-03
Chr03	irgsp1_rep	CDS	11527614	11527736	.	-	0	Parent=Os03t0319400-03
Chr03	irgsp1_rep	CDS	11527410	11527520	.	-	0	Parent=Os03t0319400-03
Chr03	irgsp1_rep	CDS	11527152	11527265	.	-	0	Parent=Os03t0319400-03
Chr03	irgsp1_rep	CDS	11526959	11527015	.	-	0	Parent=Os03t0319400-03
Chr03	irgsp1_rep	CDS	11526805	11526879	.	-	0	Parent=Os03t0319400-03
Chr03	irgsp1_rep	CDS	11526630	11526713	.	-	0	Parent=Os03t0319400-03
Chr03	irgsp1_rep	three_prime_UTR	11526525	11526629	.	-	.	Parent=Os03t0319400-03
Chr03	irgsp1_rep	mRNA	11546582	11549036	.	-	.	ID=Os03t0320000-01;Name=Os03t0320000-01;Locus_id=Os03g0320000;CGSNL Gene Symbol=SIP1%3B2;CGSNL Gene Name=SMALL AND BASIC INTRINSIC PROTEIN 1%3B2;Oryzabase Gene Symbol Synonym(s)=OsSIP1%3B2%2C OsSTA98;Note=Similar to Small basic membrane integral protein ZmSIP2-1.;Transcript_evidence=AK071190 (DDBJ%2C Best hit);ORF_evidence=Q10M80 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Aquaporin-like (IPR023271);NIAS_FLcDNA=J023088L13;Oryzabase=8528;Expression=AK071190;TENOR=Os03t0320000-01;KEGG=Os03t0320000-01
Chr03	irgsp1_rep	five_prime_UTR	11548921	11549036	.	-	.	Parent=Os03t0320000-01
Chr03	irgsp1_rep	CDS	11548600	11548920	.	-	0	Parent=Os03t0320000-01
Chr03	irgsp1_rep	CDS	11547278	11547538	.	-	0	Parent=Os03t0320000-01
Chr03	irgsp1_rep	CDS	11546709	11546879	.	-	0	Parent=Os03t0320000-01
Chr03	irgsp1_rep	three_prime_UTR	11546582	11546708	.	-	.	Parent=Os03t0320000-01
Chr03	irgsp1_rep	mRNA	11549564	11551862	.	-	.	ID=Os03t0320100-01;Name=Os03t0320100-01;Locus_id=Os03g0320100;Note=Alpha-L-arabinofuranosidase%2C C-terminal domain containing protein.;Transcript_evidence=AK062471 (DDBJ%2C Best hit);ORF_evidence=Q10M79 (UniProt);GO=Biological Process: L-arabinose metabolic process (GO:0046373),Molecular Function: alpha-N-arabinofuranosidase activity (GO:0046556);InterPro=Alpha-L-arabinofuranosidase%2C C-terminal (IPR010720),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-103-E11;Expression=AK062471;TENOR=Os03t0320100-01;KEGG=Os03t0320100-01
Chr03	irgsp1_rep	five_prime_UTR	11551861	11551862	.	-	.	Parent=Os03t0320100-01
Chr03	irgsp1_rep	CDS	11551765	11551860	.	-	0	Parent=Os03t0320100-01
Chr03	irgsp1_rep	CDS	11551600	11551671	.	-	0	Parent=Os03t0320100-01
Chr03	irgsp1_rep	CDS	11551421	11551524	.	-	0	Parent=Os03t0320100-01
Chr03	irgsp1_rep	CDS	11551081	11551137	.	-	1	Parent=Os03t0320100-01
Chr03	irgsp1_rep	CDS	11550668	11550866	.	-	1	Parent=Os03t0320100-01
Chr03	irgsp1_rep	CDS	11550445	11550588	.	-	0	Parent=Os03t0320100-01
Chr03	irgsp1_rep	CDS	11549952	11550101	.	-	0	Parent=Os03t0320100-01
Chr03	irgsp1_rep	three_prime_UTR	11549564	11549951	.	-	.	Parent=Os03t0320100-01
Chr03	irgsp1_rep	mRNA	11560162	11562564	.	+	.	ID=Os03t0320400-01;Name=Os03t0320400-01;Locus_id=Os03g0320400;Oryzabase Gene Symbol Synonym(s)=OsSET16%2C SDG713%2C OsSUVH3;Oryzabase Gene Name Synonym(s)=SET protein 16%2C SUVH Histone Methyltransferase 3;Note=SET domain containing protein.;Transcript_evidence=AK100673 (DDBJ%2C Best hit);ORF_evidence=Q9AT64 (UniProt);GO=Biological Process: histone lysine methylation (GO:0034968),Cellular Component: nucleus (GO:0005634),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: histone-lysine N-methyltransferase activity (GO:0018024),Molecular Function: histone binding (GO:0042393);InterPro=SET domain (IPR001214),SRA-YDG (IPR003105),Pre-SET domain (IPR007728);NIAS_FLcDNA=J023112P17;Oryzabase=13381;Expression=AK100673;TENOR=Os03t0320400-01;KEGG=Os03t0320400-01
Chr03	irgsp1_rep	five_prime_UTR	11560162	11560361	.	+	.	Parent=Os03t0320400-01
Chr03	irgsp1_rep	CDS	11560362	11560554	.	+	0	Parent=Os03t0320400-01
Chr03	irgsp1_rep	CDS	11560681	11562092	.	+	2	Parent=Os03t0320400-01
Chr03	irgsp1_rep	three_prime_UTR	11562093	11562564	.	+	.	Parent=Os03t0320400-01
Chr03	irgsp1_rep	mRNA	11568470	11569520	.	-	.	ID=Os03t0320600-01;Name=Os03t0320600-01;Locus_id=Os03g0320600;Oryzabase Gene Symbol Synonym(s)=OsVQ11;Oryzabase Gene Name Synonym(s)=VQ motif-containing protein 11;Note=VQ domain containing protein.;Transcript_evidence=AK108145 (DDBJ%2C Best hit);ORF_evidence=A2XG34 (UniProt);InterPro=VQ (IPR008889);NIAS_FLcDNA=002-139-F03;Oryzabase=13627;Expression=AK108145;TENOR=Os03t0320600-01;KEGG=Os03t0320600-01
Chr03	irgsp1_rep	five_prime_UTR	11569437	11569520	.	-	.	Parent=Os03t0320600-01
Chr03	irgsp1_rep	CDS	11568789	11569436	.	-	0	Parent=Os03t0320600-01
Chr03	irgsp1_rep	three_prime_UTR	11568470	11568788	.	-	.	Parent=Os03t0320600-01
Chr03	irgsp1_rep	mRNA	11585300	11588143	.	+	.	ID=Os03t0320800-01;Name=Os03t0320800-01;Locus_id=Os03g0320800;Note=Similar to Leucine Rich Repeat family protein%2C expressed.;Transcript_evidence=AK103265 (DDBJ%2C Best hit);ORF_evidence=Q10M75 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591);NIAS_FLcDNA=J033124G13;TENOR=Os03t0320800-01
Chr03	irgsp1_rep	five_prime_UTR	11585300	11585420	.	+	.	Parent=Os03t0320800-01
Chr03	irgsp1_rep	five_prime_UTR	11585516	11586185	.	+	.	Parent=Os03t0320800-01
Chr03	irgsp1_rep	CDS	11586186	11587101	.	+	0	Parent=Os03t0320800-01
Chr03	irgsp1_rep	CDS	11587627	11588143	.	+	2	Parent=Os03t0320800-01
Chr03	irgsp1_rep	mRNA	11586569	11590208	.	+	.	ID=Os03t0320800-02;Name=Os03t0320800-02;Locus_id=Os03g0320800;Note=Similar to Leucine Rich Repeat family protein%2C expressed.;Transcript_evidence=AK105421 (DDBJ%2C Best hit);ORF_evidence=Q10M75 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=001-124-B11;TENOR=Os03t0320800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	11586569	11586569	.	+	.	Parent=Os03t0320800-02
Chr03	irgsp1_rep	CDS	11586570	11587101	.	+	0	Parent=Os03t0320800-02
Chr03	irgsp1_rep	CDS	11587627	11588639	.	+	2	Parent=Os03t0320800-02
Chr03	irgsp1_rep	CDS	11589001	11589057	.	+	0	Parent=Os03t0320800-02
Chr03	irgsp1_rep	three_prime_UTR	11589058	11589246	.	+	.	Parent=Os03t0320800-02
Chr03	irgsp1_rep	three_prime_UTR	11589348	11590208	.	+	.	Parent=Os03t0320800-02
Chr03	irgsp1_rep	mRNA	11587526	11588957	.	-	.	ID=Os03t0320850-00;Name=Os03t0320850-00;Locus_id=Os03g0320850;Note=Hypothetical gene.;Transcript_evidence=BT061105 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0320850-00;KEGG=Os03t0320850-00
Chr03	irgsp1_rep	five_prime_UTR	11588720	11588957	.	-	.	Parent=Os03t0320850-00
Chr03	irgsp1_rep	five_prime_UTR	11588312	11588613	.	-	.	Parent=Os03t0320850-00
Chr03	irgsp1_rep	CDS	11588012	11588311	.	-	0	Parent=Os03t0320850-00
Chr03	irgsp1_rep	three_prime_UTR	11587526	11588011	.	-	.	Parent=Os03t0320850-00
Chr03	irgsp1_rep	mRNA	11593874	11595696	.	-	.	ID=Os03t0320875-00;Name=Os03t0320875-00;Locus_id=Os03g0320875;Note=Similar to histone H2B.5.;Transcript_evidence=AF356818 (DDBJ);ORF_evidence=NP_001105358.1 (RefSeq);GO=Molecular Function: DNA binding (GO:0003677);InterPro=Histone-fold (IPR009072);TENOR=Os03t0320875-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	11595549	11595696	.	-	.	Parent=Os03t0320875-00
Chr03	irgsp1_rep	five_prime_UTR	11594012	11594056	.	-	.	Parent=Os03t0320875-00
Chr03	irgsp1_rep	CDS	11593874	11594011	.	-	0	Parent=Os03t0320875-00
Chr03	irgsp1_rep	mRNA	11595454	11599057	.	+	.	ID=Os03t0320900-01;Name=Os03t0320900-01;Locus_id=Os03g0320900;CGSNL Gene Symbol=V2;CGSNL Gene Name=VIRESCENT 2;Oryzabase Gene Symbol Synonym(s)=v2%2C mGmk%2C GMK%2C Gmk%2C pt/mtGK%2C pt/mt GK%2C OsV2%2C OsGMK;Oryzabase Gene Name Synonym(s)=virescent2%2C virescent 2%2C virescent-2%2C Gluanylate kinase%2C plastid/mitochondrial guanylate kinase;Note=Guanylate kinase family protein.;Transcript_evidence=AK106255 (DDBJ%2C Best hit);ORF_evidence=NP_001149581.1 (RefSeq);GO=Biological Process: purine nucleotide metabolic process (GO:0006163),Molecular Function: guanylate kinase activity (GO:0004385),Molecular Function: protein binding (GO:0005515);InterPro=Guanylate kinase (IPR008144),Guanylate kinase/L-type calcium channel (IPR008145),Guanylate kinase%2C sub-group (IPR017665),Guanylate kinase%2C conserved site (IPR020590);NIAS_FLcDNA=002-100-E10;Oryzabase=9669;Expression=AK106255;TENOR=Os03t0320900-01;KEGG=Os03t0320900-01 (EC:2.7.4.8)
Chr03	irgsp1_rep	five_prime_UTR	11595454	11595555	.	+	.	Parent=Os03t0320900-01
Chr03	irgsp1_rep	CDS	11595556	11595750	.	+	0	Parent=Os03t0320900-01
Chr03	irgsp1_rep	CDS	11595843	11595974	.	+	0	Parent=Os03t0320900-01
Chr03	irgsp1_rep	CDS	11596075	11596266	.	+	0	Parent=Os03t0320900-01
Chr03	irgsp1_rep	CDS	11598336	11598674	.	+	0	Parent=Os03t0320900-01
Chr03	irgsp1_rep	three_prime_UTR	11598675	11599057	.	+	.	Parent=Os03t0320900-01
Chr03	irgsp1_rep	mRNA	11599823	11602775	.	+	.	ID=Os03t0321000-01;Name=Os03t0321000-01;Locus_id=Os03g0321000;Note=Similar to Steroid membrane binding protein-like.;Transcript_evidence=AK103653 (DDBJ%2C Best hit);ORF_evidence=NP_190458.1 (RefSeq);GO=Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome b5 (IPR001199);NIAS_FLcDNA=J033135E06;Expression=AK103653;TENOR=Os03t0321000-01;KEGG=Os03t0321000-01
Chr03	irgsp1_rep	five_prime_UTR	11599823	11600072	.	+	.	Parent=Os03t0321000-01
Chr03	irgsp1_rep	CDS	11600073	11600413	.	+	0	Parent=Os03t0321000-01
Chr03	irgsp1_rep	CDS	11602332	11602566	.	+	1	Parent=Os03t0321000-01
Chr03	irgsp1_rep	three_prime_UTR	11602567	11602775	.	+	.	Parent=Os03t0321000-01
Chr03	irgsp1_rep	mRNA	11603244	11603867	.	+	.	ID=Os03t0321100-01;Name=Os03t0321100-01;Locus_id=Os03g0321100;Note=Hypothetical protein.;Transcript_evidence=AK108260 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-141-B02;Expression=AK108260;TENOR=Os03t0321100-01;KEGG=Os03t0321100-01
Chr03	irgsp1_rep	five_prime_UTR	11603244	11603389	.	+	.	Parent=Os03t0321100-01
Chr03	irgsp1_rep	CDS	11603390	11603731	.	+	0	Parent=Os03t0321100-01
Chr03	irgsp1_rep	three_prime_UTR	11603732	11603867	.	+	.	Parent=Os03t0321100-01
Chr03	irgsp1_rep	mRNA	11613231	11614737	.	+	.	ID=Os03t0321300-01;Name=Os03t0321300-01;Locus_id=Os03g0321300;Oryzabase Gene Symbol Synonym(s)=OsFbox137%2C Os_F0544;Oryzabase Gene Name Synonym(s)=F-box protein 137;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK071172 (DDBJ%2C Best hit);ORF_evidence=B6TU48 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023081A12;Oryzabase=16928;Expression=AK071172;TENOR=Os03t0321300-01;KEGG=Os03t0321300-01
Chr03	irgsp1_rep	five_prime_UTR	11613231	11613315	.	+	.	Parent=Os03t0321300-01
Chr03	irgsp1_rep	CDS	11613316	11614470	.	+	0	Parent=Os03t0321300-01
Chr03	irgsp1_rep	three_prime_UTR	11614471	11614737	.	+	.	Parent=Os03t0321300-01
Chr03	irgsp1_rep	mRNA	11621927	11622952	.	-	.	ID=Os03t0321400-01;Name=Os03t0321400-01;Locus_id=Os03g0321400;Note=Protein of unknown function DUF1692 domain containing protein.;Transcript_evidence=AK059138 (DDBJ%2C Best hit);ORF_evidence=NP_001150650.1 (RefSeq);InterPro=Domain of unknown function DUF1692 (IPR012936);NIAS_FLcDNA=001-022-H09;Expression=AK059138;TENOR=Os03t0321400-01;KEGG=Os03t0321400-01
Chr03	irgsp1_rep	CDS	11622860	11622952	.	-	0	Parent=Os03t0321400-01
Chr03	irgsp1_rep	CDS	11622400	11622466	.	-	0	Parent=Os03t0321400-01
Chr03	irgsp1_rep	CDS	11622192	11622283	.	-	2	Parent=Os03t0321400-01
Chr03	irgsp1_rep	three_prime_UTR	11621927	11622191	.	-	.	Parent=Os03t0321400-01
Chr03	irgsp1_rep	mRNA	11629451	11635559	.	-	.	ID=Os03t0321500-01;Name=Os03t0321500-01;Locus_id=Os03g0321500;Note=Protein of unknown function DUF632 domain containing protein.;Transcript_evidence=AK072126 (DDBJ%2C Best hit);ORF_evidence=B8ANE5 (UniProt);InterPro=Domain of unknown function DUF632 (IPR006867),Domain of unknown function DUF630 (IPR006868);NIAS_FLcDNA=J013124O10;Expression=AK072126;TENOR=Os03t0321500-01;KEGG=Os03t0321500-01
Chr03	irgsp1_rep	five_prime_UTR	11635343	11635559	.	-	.	Parent=Os03t0321500-01
Chr03	irgsp1_rep	five_prime_UTR	11634020	11634038	.	-	.	Parent=Os03t0321500-01
Chr03	irgsp1_rep	CDS	11632705	11634019	.	-	0	Parent=Os03t0321500-01
Chr03	irgsp1_rep	CDS	11632412	11632489	.	-	2	Parent=Os03t0321500-01
Chr03	irgsp1_rep	CDS	11631898	11632112	.	-	2	Parent=Os03t0321500-01
Chr03	irgsp1_rep	CDS	11630965	11631188	.	-	0	Parent=Os03t0321500-01
Chr03	irgsp1_rep	CDS	11629777	11630476	.	-	1	Parent=Os03t0321500-01
Chr03	irgsp1_rep	three_prime_UTR	11629451	11629776	.	-	.	Parent=Os03t0321500-01
Chr03	irgsp1_rep	mRNA	11650891	11652144	.	+	.	ID=Os03t0321700-01;Name=Os03t0321700-01;Locus_id=Os03g0321700;CGSNL Gene Symbol=WRKY55;CGSNL Gene Name=WRKY GENE 55;Oryzabase Gene Symbol Synonym(s)=OsWRKY55;Oryzabase Gene Name Synonym(s)=Rice WRKY gene55;Note=Similar to WRKY transcription factor 55.;Transcript_evidence=AK101653 (DDBJ%2C Best hit);ORF_evidence=A6N066 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);NIAS_FLcDNA=J033057D07;Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6569;Expression=AK101653;TENOR=Os03t0321700-01;KEGG=Os03t0321700-01
Chr03	irgsp1_rep	five_prime_UTR	11650891	11650942	.	+	.	Parent=Os03t0321700-01
Chr03	irgsp1_rep	CDS	11650943	11650995	.	+	0	Parent=Os03t0321700-01
Chr03	irgsp1_rep	CDS	11651114	11651218	.	+	1	Parent=Os03t0321700-01
Chr03	irgsp1_rep	CDS	11651511	11651985	.	+	1	Parent=Os03t0321700-01
Chr03	irgsp1_rep	three_prime_UTR	11651986	11652144	.	+	.	Parent=Os03t0321700-01
Chr03	irgsp1_rep	mRNA	11651053	11653964	.	-	.	ID=Os03t0321800-01;Name=Os03t0321800-01;Locus_id=Os03g0321800;Note=Similar to WRKY transcription factor 55.;Transcript_evidence=AK111447 (DDBJ%2C Best hit);ORF_evidence=NP_001030961.1 (RefSeq);GO=Biological Process: protein modification process (GO:0006464),Biological Process: lipoate biosynthetic process (GO:0009107),Cellular Component: cytoplasm (GO:0005737),Molecular Function: catalytic activity (GO:0003824),Molecular Function: octanoyltransferase activity (GO:0016415);InterPro=Octanoyltransferase (IPR000544),Biotin/lipoate A/B protein ligase (IPR004143);NIAS_FLcDNA=002-183-B06;Expression=AK111447;TENOR=Os03t0321800-01;KEGG=Os03t0321800-01 (EC:2.3.1.181)
Chr03	irgsp1_rep	five_prime_UTR	11653856	11653964	.	-	.	Parent=Os03t0321800-01
Chr03	irgsp1_rep	CDS	11653130	11653855	.	-	0	Parent=Os03t0321800-01
Chr03	irgsp1_rep	three_prime_UTR	11653023	11653129	.	-	.	Parent=Os03t0321800-01
Chr03	irgsp1_rep	three_prime_UTR	11652853	11652918	.	-	.	Parent=Os03t0321800-01
Chr03	irgsp1_rep	three_prime_UTR	11652197	11652280	.	-	.	Parent=Os03t0321800-01
Chr03	irgsp1_rep	three_prime_UTR	11651407	11651926	.	-	.	Parent=Os03t0321800-01
Chr03	irgsp1_rep	three_prime_UTR	11651053	11651331	.	-	.	Parent=Os03t0321800-01
Chr03	irgsp1_rep	mRNA	11652979	11653916	.	-	.	ID=Os03t0321800-02;Name=Os03t0321800-02;Locus_id=Os03g0321800;Note=Similar to WRKY transcription factor 55.;Transcript_evidence=AK061075 (DDBJ%2C Best hit);ORF_evidence=NP_001030961.1 (RefSeq);GO=Biological Process: protein modification process (GO:0006464),Biological Process: lipoate biosynthetic process (GO:0009107),Cellular Component: cytoplasm (GO:0005737),Molecular Function: catalytic activity (GO:0003824),Molecular Function: octanoyltransferase activity (GO:0016415);InterPro=Octanoyltransferase (IPR000544),Biotin/lipoate A/B protein ligase (IPR004143);NIAS_FLcDNA=006-206-E01;Expression=AK061075;TENOR=Os03t0321800-02;KEGG=Os03t0321800-02 (EC:2.3.1.181)
Chr03	irgsp1_rep	five_prime_UTR	11653856	11653916	.	-	.	Parent=Os03t0321800-02
Chr03	irgsp1_rep	CDS	11653130	11653855	.	-	0	Parent=Os03t0321800-02
Chr03	irgsp1_rep	three_prime_UTR	11652979	11653129	.	-	.	Parent=Os03t0321800-02
Chr03	irgsp1_rep	mRNA	11653146	11656600	.	+	.	ID=Os03t0321900-01;Name=Os03t0321900-01;Locus_id=Os03g0321900;Note=Similar to tRNA-specific adenosine deaminase.;Transcript_evidence=AK107099 (DDBJ%2C Best hit);ORF_evidence=NP_001152082.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: hydrolase activity (GO:0016787);InterPro=CMP/dCMP deaminase%2C zinc-binding (IPR002125),Cytidine deaminase-like (IPR016193);NIAS_FLcDNA=002-122-A01;TENOR=Os03t0321900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	11653146	11654174	.	+	.	Parent=Os03t0321900-01
Chr03	irgsp1_rep	five_prime_UTR	11654268	11654362	.	+	.	Parent=Os03t0321900-01
Chr03	irgsp1_rep	CDS	11654363	11654488	.	+	0	Parent=Os03t0321900-01
Chr03	irgsp1_rep	CDS	11654882	11655015	.	+	0	Parent=Os03t0321900-01
Chr03	irgsp1_rep	CDS	11655127	11655157	.	+	1	Parent=Os03t0321900-01
Chr03	irgsp1_rep	three_prime_UTR	11655158	11655223	.	+	.	Parent=Os03t0321900-01
Chr03	irgsp1_rep	three_prime_UTR	11655516	11655619	.	+	.	Parent=Os03t0321900-01
Chr03	irgsp1_rep	three_prime_UTR	11656100	11656600	.	+	.	Parent=Os03t0321900-01
Chr03	irgsp1_rep	mRNA	11653999	11656600	.	+	.	ID=Os03t0321900-02;Name=Os03t0321900-02;Locus_id=Os03g0321900;Note=CMP/dCMP deaminase%2C zinc-binding domain containing protein.;Transcript_evidence=AK073317 (DDBJ%2C Best hit);ORF_evidence=NP_001152082.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: hydrolase activity (GO:0016787);InterPro=CMP/dCMP deaminase%2C zinc-binding (IPR002125),APOBEC/CMP deaminase%2C zinc-binding (IPR016192),Cytidine deaminase-like (IPR016193);NIAS_FLcDNA=J033024M10;Expression=AK073317;TENOR=Os03t0321900-02;KEGG=Os03t0321900-02
Chr03	irgsp1_rep	five_prime_UTR	11653999	11654129	.	+	.	Parent=Os03t0321900-02
Chr03	irgsp1_rep	CDS	11654130	11654174	.	+	0	Parent=Os03t0321900-02
Chr03	irgsp1_rep	CDS	11654268	11654305	.	+	0	Parent=Os03t0321900-02
Chr03	irgsp1_rep	CDS	11654422	11654488	.	+	1	Parent=Os03t0321900-02
Chr03	irgsp1_rep	CDS	11654882	11655041	.	+	0	Parent=Os03t0321900-02
Chr03	irgsp1_rep	CDS	11655127	11655223	.	+	2	Parent=Os03t0321900-02
Chr03	irgsp1_rep	CDS	11655516	11655619	.	+	1	Parent=Os03t0321900-02
Chr03	irgsp1_rep	CDS	11656100	11656140	.	+	2	Parent=Os03t0321900-02
Chr03	irgsp1_rep	three_prime_UTR	11656141	11656600	.	+	.	Parent=Os03t0321900-02
Chr03	irgsp1_rep	mRNA	11662066	11662384	.	-	.	ID=Os03t0322000-00;Name=Os03t0322000-00;Locus_id=Os03g0322000;Note=Similar to Centromere protein-like protein (Fragment).;Transcript_evidence=AY224484 (DDBJ%2C Best hit);ORF_evidence=Q10M62 (UniProt);TENOR=Os03t0322000-00
Chr03	irgsp1_rep	CDS	11662066	11662384	.	-	0	Parent=Os03t0322000-00
Chr03	irgsp1_rep	mRNA	11667527	11668121	.	-	.	ID=Os03t0322200-01;Name=Os03t0322200-01;Locus_id=Os03g0322200;Note=Similar to serine-rich protein-related.;Transcript_evidence=AK062978 (DDBJ%2C Best hit);ORF_evidence=NP_683560.1 (RefSeq);NIAS_FLcDNA=001-109-E12;Expression=AK062978;TENOR=Os03t0322200-01;KEGG=Os03t0322200-01
Chr03	irgsp1_rep	five_prime_UTR	11668075	11668121	.	-	.	Parent=Os03t0322200-01
Chr03	irgsp1_rep	CDS	11667730	11668074	.	-	0	Parent=Os03t0322200-01
Chr03	irgsp1_rep	three_prime_UTR	11667527	11667729	.	-	.	Parent=Os03t0322200-01
Chr03	irgsp1_rep	mRNA	11672893	11677478	.	+	.	ID=Os03t0322500-01;Name=Os03t0322500-01;Locus_id=Os03g0322500;Note=Similar to 14 kDa zinc-binding protein (Protein kinase C inhibitor) (PKCI).;Transcript_evidence=AK121029 (DDBJ%2C Best hit),AK103503 (DDBJ%2C Best hit);ORF_evidence=B6SJF7 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Histidine triad (HIT) protein (IPR001310),Histidine triad-like motif (IPR011146),Histidine triad motif (IPR011151),Histidine triad%2C conserved site (IPR019808);NIAS_FLcDNA=J023050G22,J033131C04;TENOR=Os03t0322500-01
Chr03	irgsp1_rep	five_prime_UTR	11672893	11672927	.	+	.	Parent=Os03t0322500-01
Chr03	irgsp1_rep	CDS	11672928	11672983	.	+	0	Parent=Os03t0322500-01
Chr03	irgsp1_rep	CDS	11673896	11673953	.	+	1	Parent=Os03t0322500-01
Chr03	irgsp1_rep	CDS	11676288	11676377	.	+	0	Parent=Os03t0322500-01
Chr03	irgsp1_rep	CDS	11676908	11677025	.	+	0	Parent=Os03t0322500-01
Chr03	irgsp1_rep	CDS	11677112	11677179	.	+	2	Parent=Os03t0322500-01
Chr03	irgsp1_rep	three_prime_UTR	11677180	11677478	.	+	.	Parent=Os03t0322500-01
Chr03	irgsp1_rep	mRNA	11677890	11680129	.	+	.	ID=Os03t0322600-01;Name=Os03t0322600-01;Locus_id=Os03g0322600;Note=Conserved hypothetical protein.;Transcript_evidence=AK067222 (DDBJ%2C Best hit);ORF_evidence=B8ANE9 (UniProt);NIAS_FLcDNA=J013099A05;Expression=AK067222;TENOR=Os03t0322600-01;KEGG=Os03t0322600-01
Chr03	irgsp1_rep	five_prime_UTR	11677890	11677959	.	+	.	Parent=Os03t0322600-01
Chr03	irgsp1_rep	CDS	11677960	11678089	.	+	0	Parent=Os03t0322600-01
Chr03	irgsp1_rep	CDS	11678205	11678389	.	+	2	Parent=Os03t0322600-01
Chr03	irgsp1_rep	CDS	11678472	11678567	.	+	0	Parent=Os03t0322600-01
Chr03	irgsp1_rep	CDS	11678690	11678746	.	+	0	Parent=Os03t0322600-01
Chr03	irgsp1_rep	CDS	11678853	11678933	.	+	0	Parent=Os03t0322600-01
Chr03	irgsp1_rep	CDS	11679180	11679214	.	+	0	Parent=Os03t0322600-01
Chr03	irgsp1_rep	CDS	11679377	11679466	.	+	1	Parent=Os03t0322600-01
Chr03	irgsp1_rep	CDS	11679555	11679711	.	+	1	Parent=Os03t0322600-01
Chr03	irgsp1_rep	CDS	11679897	11680013	.	+	0	Parent=Os03t0322600-01
Chr03	irgsp1_rep	three_prime_UTR	11680014	11680129	.	+	.	Parent=Os03t0322600-01
Chr03	irgsp1_rep	mRNA	11683525	11684400	.	-	.	ID=Os03t0322700-00;Name=Os03t0322700-00;Locus_id=Os03g0322700;CGSNL Gene Symbol=BZIP29;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 29;Oryzabase Gene Symbol Synonym(s)=OsbZIP29;Oryzabase Gene Name Synonym(s)=bZIP transcription factor 29;Note=Similar to BZIP transcription factor family protein%2C expressed.;Transcript_evidence=AK335816 (DDBJ);ORF_evidence=Q10M55 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);Oryzabase=10117;TENOR=Os03t0322700-00;KEGG=Os03t0322700-00
Chr03	irgsp1_rep	five_prime_UTR	11684351	11684400	.	-	.	Parent=Os03t0322700-00
Chr03	irgsp1_rep	CDS	11683790	11684350	.	-	0	Parent=Os03t0322700-00
Chr03	irgsp1_rep	CDS	11683525	11683698	.	-	0	Parent=Os03t0322700-00
Chr03	irgsp1_rep	mRNA	11693632	11697126	.	+	.	ID=Os03t0322800-01;Name=Os03t0322800-01;Locus_id=Os03g0322800;Note=Engulfment and cell motility%2C ELM domain containing protein.;Transcript_evidence=AK101817 (DDBJ%2C Best hit);ORF_evidence=NP_566211.1 (RefSeq);GO=Biological Process: phagocytosis (GO:0006909),Cellular Component: cytoskeleton (GO:0005856);InterPro=Engulfment/cell motility%2C ELMO (IPR006816);NIAS_FLcDNA=J033067D09;Expression=AK101817;TENOR=Os03t0322800-01;KEGG=Os03t0322800-01
Chr03	irgsp1_rep	five_prime_UTR	11693632	11693795	.	+	.	Parent=Os03t0322800-01
Chr03	irgsp1_rep	five_prime_UTR	11694474	11694487	.	+	.	Parent=Os03t0322800-01
Chr03	irgsp1_rep	CDS	11694488	11694628	.	+	0	Parent=Os03t0322800-01
Chr03	irgsp1_rep	CDS	11694741	11694849	.	+	0	Parent=Os03t0322800-01
Chr03	irgsp1_rep	CDS	11695691	11695788	.	+	2	Parent=Os03t0322800-01
Chr03	irgsp1_rep	CDS	11695869	11695937	.	+	0	Parent=Os03t0322800-01
Chr03	irgsp1_rep	CDS	11696033	11696148	.	+	0	Parent=Os03t0322800-01
Chr03	irgsp1_rep	CDS	11696225	11696279	.	+	1	Parent=Os03t0322800-01
Chr03	irgsp1_rep	CDS	11696362	11696482	.	+	0	Parent=Os03t0322800-01
Chr03	irgsp1_rep	CDS	11696573	11696715	.	+	2	Parent=Os03t0322800-01
Chr03	irgsp1_rep	CDS	11696803	11696904	.	+	0	Parent=Os03t0322800-01
Chr03	irgsp1_rep	three_prime_UTR	11696905	11697126	.	+	.	Parent=Os03t0322800-01
Chr03	irgsp1_rep	mRNA	11695907	11697121	.	+	.	ID=Os03t0322800-02;Name=Os03t0322800-02;Locus_id=Os03g0322800;Note=Similar to predicted protein.;Transcript_evidence=AK058546 (DDBJ%2C Best hit);ORF_evidence=NP_566211.1 (RefSeq);GO=Biological Process: phagocytosis (GO:0006909),Cellular Component: cytoskeleton (GO:0005856);InterPro=Engulfment/cell motility%2C ELMO (IPR006816);NIAS_FLcDNA=001-017-C04;Expression=AK058546;TENOR=Os03t0322800-02;KEGG=Os03t0322800-02
Chr03	irgsp1_rep	five_prime_UTR	11695907	11695907	.	+	.	Parent=Os03t0322800-02
Chr03	irgsp1_rep	CDS	11695908	11695937	.	+	0	Parent=Os03t0322800-02
Chr03	irgsp1_rep	CDS	11696033	11696148	.	+	0	Parent=Os03t0322800-02
Chr03	irgsp1_rep	CDS	11696225	11696279	.	+	1	Parent=Os03t0322800-02
Chr03	irgsp1_rep	CDS	11696362	11696482	.	+	0	Parent=Os03t0322800-02
Chr03	irgsp1_rep	CDS	11696573	11696715	.	+	2	Parent=Os03t0322800-02
Chr03	irgsp1_rep	CDS	11696803	11696904	.	+	0	Parent=Os03t0322800-02
Chr03	irgsp1_rep	three_prime_UTR	11696905	11697121	.	+	.	Parent=Os03t0322800-02
Chr03	irgsp1_rep	mRNA	11699307	11700672	.	-	.	ID=Os03t0322900-01;Name=Os03t0322900-01;Locus_id=Os03g0322900;RAP-DB Gene Symbol Synonym(s)=LEA17%2C OsLEA17%2C OsLEA3-2%2C LEA3-2;RAP-DB Gene Name Synonym(s)=LATE EMBRYOGENESIS ABUNDANT PROTEIN 17%2C late embryogenesis abundant protein 17;CGSNL Gene Symbol=LEA17;CGSNL Gene Name=LATE EMBRYOGENESIS ABUNDANT PROTEIN 17;Oryzabase Gene Symbol Synonym(s)=OsLEA17%2C OsLEA3-2%2C LEA3-2%2C LEA1;Oryzabase Gene Name Synonym(s)=late embryogenesis abundant protein 17;Note=Late embryogenesis abundant (LEA) protein%2C Abiotic stress tolerance;Transcript_evidence=JQ043381 (Zhonghua 11);ORF_evidence=A3AHG5;InterPro=Late embryogenesis abundant protein LEA (IPR004238);Manual Curation=February 16%2C 2017;Literature_PMID=23024799;Oryzabase=10184;TENOR=Os03t0322900-00;KEGG=Os03t0322900-00;Subcellular location=nucleus (GO:0005634)
Chr03	irgsp1_rep	five_prime_UTR	11700581	11700672	.	-	.	Parent=Os03t0322900-01
Chr03	irgsp1_rep	CDS	11699823	11700580	.	-	0	Parent=Os03t0322900-01
Chr03	irgsp1_rep	CDS	11699460	11699736	.	-	1	Parent=Os03t0322900-01
Chr03	irgsp1_rep	three_prime_UTR	11699307	11699459	.	-	.	Parent=Os03t0322900-01
Chr03	irgsp1_rep	mRNA	11710916	11711904	.	-	.	ID=Os03t0323100-01;Name=Os03t0323100-01;Locus_id=Os03g0323100;Note=Conserved hypothetical protein.;Transcript_evidence=AK062803 (DDBJ%2C Best hit),AK070776 (DDBJ%2C Best hit);ORF_evidence=B8APJ4 (UniProt);NIAS_FLcDNA=001-107-D03,J023070G03;TENOR=Os03t0323100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	11711286	11711904	.	-	.	Parent=Os03t0323100-01
Chr03	irgsp1_rep	CDS	11711214	11711285	.	-	0	Parent=Os03t0323100-01
Chr03	irgsp1_rep	three_prime_UTR	11710916	11711213	.	-	.	Parent=Os03t0323100-01
Chr03	irgsp1_rep	mRNA	11712280	11719587	.	+	.	ID=Os03t0323200-01;Name=Os03t0323200-01;Locus_id=Os03g0323200;CGSNL Gene Symbol=CHLH;CGSNL Gene Name=MAGNESIUM CHELATASE H SUBUNIT;Oryzabase Gene Symbol Synonym(s)=OsChlH%2C ChlH%2C OsCHLH;Oryzabase Gene Name Synonym(s)=magnesium chelatase subunit ChlH%2C magnesium chelatase porphyrin-binding subunit%2C Magnesium chelatase (MgCh) H subunit%2C Mg-chelatase H subunit;Note=Similar to Magnesium-chelatase subunit H family protein%2C expressed.;Transcript_evidence=AK067323 (DDBJ%2C Best hit);ORF_evidence=Q10M50 (UniProt);NIAS_FLcDNA=J013106B16;Oryzabase=10268;TENOR=Os03t0323200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	11712280	11712443	.	+	.	Parent=Os03t0323200-01
Chr03	irgsp1_rep	CDS	11712444	11712530	.	+	0	Parent=Os03t0323200-01
Chr03	irgsp1_rep	CDS	11713304	11713819	.	+	0	Parent=Os03t0323200-01
Chr03	irgsp1_rep	three_prime_UTR	11713820	11713863	.	+	.	Parent=Os03t0323200-01
Chr03	irgsp1_rep	three_prime_UTR	11713967	11714052	.	+	.	Parent=Os03t0323200-01
Chr03	irgsp1_rep	three_prime_UTR	11714863	11716665	.	+	.	Parent=Os03t0323200-01
Chr03	irgsp1_rep	three_prime_UTR	11717895	11719175	.	+	.	Parent=Os03t0323200-01
Chr03	irgsp1_rep	three_prime_UTR	11719342	11719587	.	+	.	Parent=Os03t0323200-01
Chr03	irgsp1_rep	mRNA	11713996	11718946	.	+	.	ID=Os03t0323200-02;Name=Os03t0323200-02;Locus_id=Os03g0323200;CGSNL Gene Symbol=CHLH;CGSNL Gene Name=MAGNESIUM CHELATASE H SUBUNIT;Oryzabase Gene Symbol Synonym(s)=OsChlH%2C ChlH%2C OsCHLH;Oryzabase Gene Name Synonym(s)=magnesium chelatase subunit ChlH%2C magnesium chelatase porphyrin-binding subunit%2C Magnesium chelatase (MgCh) H subunit%2C Mg-chelatase H subunit;Note=Similar to Magnesium-chelatase subunit H family protein%2C expressed.;Transcript_evidence=AK069545 (DDBJ%2C Best hit);ORF_evidence=Q10M50 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Biological Process: chlorophyll biosynthetic process (GO:0015995),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: magnesium chelatase activity (GO:0016851);InterPro=CobN/magnesium chelatase (IPR003672),Magnesium-chelatase%2C subunit H (IPR011771),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023025I06;Oryzabase=10268;Expression=AK069545;TENOR=Os03t0323200-02;KEGG=Os03t0323200-02 (EC:6.6.1.1)
Chr03	irgsp1_rep	CDS	11713996	11714052	.	+	0	Parent=Os03t0323200-02
Chr03	irgsp1_rep	CDS	11714863	11716665	.	+	0	Parent=Os03t0323200-02
Chr03	irgsp1_rep	CDS	11717895	11718749	.	+	0	Parent=Os03t0323200-02
Chr03	irgsp1_rep	three_prime_UTR	11718750	11718946	.	+	.	Parent=Os03t0323200-02
Chr03	irgsp1_rep	mRNA	11716074	11718876	.	+	.	ID=Os03t0323200-03;Name=Os03t0323200-03;Locus_id=Os03g0323200;CGSNL Gene Symbol=CHLH;CGSNL Gene Name=MAGNESIUM CHELATASE H SUBUNIT;Oryzabase Gene Symbol Synonym(s)=OsChlH%2C ChlH%2C OsCHLH;Oryzabase Gene Name Synonym(s)=magnesium chelatase subunit ChlH%2C magnesium chelatase porphyrin-binding subunit%2C Magnesium chelatase (MgCh) H subunit%2C Mg-chelatase H subunit;Note=Similar to Magnesium-chelatase subunit H family protein%2C expressed.;Transcript_evidence=AK062262 (DDBJ%2C Best hit);ORF_evidence=Q10M50 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: nucleotide binding (GO:0000166);InterPro=CobN/magnesium chelatase (IPR003672),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-047-H04;Oryzabase=10268;Expression=AK062262;TENOR=Os03t0323200-03;KEGG=Os03t0323200-03 (EC:6.6.1.1)
Chr03	irgsp1_rep	five_prime_UTR	11716074	11716074	.	+	.	Parent=Os03t0323200-03
Chr03	irgsp1_rep	CDS	11716075	11716665	.	+	0	Parent=Os03t0323200-03
Chr03	irgsp1_rep	CDS	11717895	11718749	.	+	0	Parent=Os03t0323200-03
Chr03	irgsp1_rep	three_prime_UTR	11718750	11718876	.	+	.	Parent=Os03t0323200-03
Chr03	irgsp1_rep	mRNA	11716344	11719556	.	+	.	ID=Os03t0323200-04;Name=Os03t0323200-04;Locus_id=Os03g0323200;CGSNL Gene Symbol=CHLH;CGSNL Gene Name=MAGNESIUM CHELATASE H SUBUNIT;Oryzabase Gene Symbol Synonym(s)=OsChlH%2C ChlH%2C OsCHLH;Oryzabase Gene Name Synonym(s)=magnesium chelatase subunit ChlH%2C magnesium chelatase porphyrin-binding subunit%2C Magnesium chelatase (MgCh) H subunit%2C Mg-chelatase H subunit;Note=Similar to Magnesium-chelatase subunit H family protein%2C expressed.;Transcript_evidence=AK065420 (DDBJ%2C Best hit);ORF_evidence=Q10M50 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: nucleotide binding (GO:0000166);InterPro=CobN/magnesium chelatase (IPR003672),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013022D10;Oryzabase=10268;Expression=AK065420;TENOR=Os03t0323200-04;KEGG=Os03t0323200-04 (EC:6.6.1.1)
Chr03	irgsp1_rep	five_prime_UTR	11716344	11716344	.	+	.	Parent=Os03t0323200-04
Chr03	irgsp1_rep	CDS	11716345	11716665	.	+	0	Parent=Os03t0323200-04
Chr03	irgsp1_rep	CDS	11717895	11718749	.	+	0	Parent=Os03t0323200-04
Chr03	irgsp1_rep	three_prime_UTR	11718750	11719175	.	+	.	Parent=Os03t0323200-04
Chr03	irgsp1_rep	three_prime_UTR	11719342	11719556	.	+	.	Parent=Os03t0323200-04
Chr03	irgsp1_rep	mRNA	11720632	11721347	.	-	.	ID=Os03t0323350-00;Name=Os03t0323350-00;Locus_id=Os03g0323350;Note=Similar to Glycosyl hydrolase family 1 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10M49 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);TENOR=Os03t0323350-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	11721227	11721347	.	-	0	Parent=Os03t0323350-00
Chr03	irgsp1_rep	CDS	11721042	11721073	.	-	2	Parent=Os03t0323350-00
Chr03	irgsp1_rep	CDS	11720831	11720932	.	-	0	Parent=Os03t0323350-00
Chr03	irgsp1_rep	CDS	11720632	11720712	.	-	0	Parent=Os03t0323350-00
Chr03	irgsp1_rep	mRNA	11725006	11730468	.	+	.	ID=Os03t0323500-01;Name=Os03t0323500-01;Locus_id=Os03g0323500;Note=Arf GTPase activating protein family protein.;Transcript_evidence=AK066439 (DDBJ%2C Best hit);ORF_evidence=Q10M48 (UniProt);GO=Biological Process: regulation of ARF GTPase activity (GO:0032312),Molecular Function: ARF GTPase activator activity (GO:0008060),Molecular Function: zinc ion binding (GO:0008270);InterPro=Arf GTPase activating protein (IPR001164);NIAS_FLcDNA=J013067E08;Expression=AK066439;TENOR=Os03t0323500-01;KEGG=Os03t0323500-01
Chr03	irgsp1_rep	five_prime_UTR	11725006	11725270	.	+	.	Parent=Os03t0323500-01
Chr03	irgsp1_rep	CDS	11725271	11725375	.	+	0	Parent=Os03t0323500-01
Chr03	irgsp1_rep	CDS	11725514	11725575	.	+	0	Parent=Os03t0323500-01
Chr03	irgsp1_rep	CDS	11725901	11725988	.	+	1	Parent=Os03t0323500-01
Chr03	irgsp1_rep	CDS	11726070	11726131	.	+	0	Parent=Os03t0323500-01
Chr03	irgsp1_rep	CDS	11726362	11726458	.	+	1	Parent=Os03t0323500-01
Chr03	irgsp1_rep	CDS	11726704	11727093	.	+	0	Parent=Os03t0323500-01
Chr03	irgsp1_rep	CDS	11727184	11727723	.	+	0	Parent=Os03t0323500-01
Chr03	irgsp1_rep	CDS	11727968	11728078	.	+	0	Parent=Os03t0323500-01
Chr03	irgsp1_rep	CDS	11728214	11728381	.	+	0	Parent=Os03t0323500-01
Chr03	irgsp1_rep	three_prime_UTR	11728382	11728506	.	+	.	Parent=Os03t0323500-01
Chr03	irgsp1_rep	three_prime_UTR	11728592	11728669	.	+	.	Parent=Os03t0323500-01
Chr03	irgsp1_rep	three_prime_UTR	11729458	11729584	.	+	.	Parent=Os03t0323500-01
Chr03	irgsp1_rep	three_prime_UTR	11729692	11729737	.	+	.	Parent=Os03t0323500-01
Chr03	irgsp1_rep	three_prime_UTR	11729821	11730468	.	+	.	Parent=Os03t0323500-01
Chr03	irgsp1_rep	mRNA	11730721	11731577	.	-	.	ID=Os03t0323600-01;Name=Os03t0323600-01;Locus_id=Os03g0323600;Oryzabase Gene Symbol Synonym(s)=OsDjC29;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C29;Note=Similar to DnaJ domain containing protein%2C expressed.;Transcript_evidence=AK107871 (DDBJ%2C Best hit);ORF_evidence=Q10M47 (UniProt);NIAS_FLcDNA=002-134-C07;Oryzabase=12186;Expression=AK107871;TENOR=Os03t0323600-01;KEGG=Os03t0323600-01
Chr03	irgsp1_rep	five_prime_UTR	11731440	11731577	.	-	.	Parent=Os03t0323600-01
Chr03	irgsp1_rep	CDS	11731391	11731439	.	-	0	Parent=Os03t0323600-01
Chr03	irgsp1_rep	CDS	11730942	11731030	.	-	2	Parent=Os03t0323600-01
Chr03	irgsp1_rep	three_prime_UTR	11730721	11730941	.	-	.	Parent=Os03t0323600-01
Chr03	irgsp1_rep	mRNA	11742589	11747955	.	+	.	ID=Os03t0323800-01;Name=Os03t0323800-01;Locus_id=Os03g0323800;Oryzabase Gene Symbol Synonym(s)=NP1977%2C OsVDAC8%2C VDAC8%2C Os1977;Oryzabase Gene Name Synonym(s)=eukaryotic type Porin family protein%2C voltage-dependent anion channel 8;Note=Similar to ISP42-like protein (Fragment).;Transcript_evidence=AK105342 (DDBJ%2C Best hit);ORF_evidence=B6TEP3 (UniProt);GO=Biological Process: anion transport (GO:0006820),Biological Process: regulation of anion transport (GO:0044070),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial outer membrane (GO:0005741),Molecular Function: voltage-gated anion channel activity (GO:0008308);InterPro=Porin%2C eukaryotic type (IPR001925);NIAS_FLcDNA=001-118-G11;Oryzabase=14981;Expression=AK105342;TENOR=Os03t0323800-01;KEGG=Os03t0323800-01
Chr03	irgsp1_rep	five_prime_UTR	11742589	11742641	.	+	.	Parent=Os03t0323800-01
Chr03	irgsp1_rep	CDS	11742642	11742852	.	+	0	Parent=Os03t0323800-01
Chr03	irgsp1_rep	CDS	11744086	11744167	.	+	2	Parent=Os03t0323800-01
Chr03	irgsp1_rep	CDS	11744239	11744338	.	+	1	Parent=Os03t0323800-01
Chr03	irgsp1_rep	CDS	11744423	11744518	.	+	0	Parent=Os03t0323800-01
Chr03	irgsp1_rep	CDS	11744604	11744654	.	+	0	Parent=Os03t0323800-01
Chr03	irgsp1_rep	CDS	11744797	11744862	.	+	0	Parent=Os03t0323800-01
Chr03	irgsp1_rep	CDS	11745525	11745626	.	+	0	Parent=Os03t0323800-01
Chr03	irgsp1_rep	CDS	11746211	11746279	.	+	0	Parent=Os03t0323800-01
Chr03	irgsp1_rep	CDS	11746363	11746446	.	+	0	Parent=Os03t0323800-01
Chr03	irgsp1_rep	CDS	11746643	11746738	.	+	0	Parent=Os03t0323800-01
Chr03	irgsp1_rep	CDS	11747328	11747384	.	+	0	Parent=Os03t0323800-01
Chr03	irgsp1_rep	three_prime_UTR	11747385	11747955	.	+	.	Parent=Os03t0323800-01
Chr03	irgsp1_rep	mRNA	11751959	11753399	.	+	.	ID=Os03t0323900-01;Name=Os03t0323900-01;Locus_id=Os03g0323900;Oryzabase Gene Symbol Synonym(s)=OsLTPG4%2C OsLTPg4;Oryzabase Gene Name Synonym(s)=GPI-anchored non-specific lipid transfer protein 4%2C type G nsLTP 4%2C type G non-specific lipid transfer protein 4;Note=Bifunctional inhibitor/plant lipid transfer protein/seed storage domain containing protein.;Transcript_evidence=AK108122 (DDBJ%2C Best hit);ORF_evidence=NP_001148028.1 (RefSeq);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=002-139-D01;Oryzabase=13491;Expression=AK108122;TENOR=Os03t0323900-01;KEGG=Os03t0323900-01
Chr03	irgsp1_rep	CDS	11751959	11752406	.	+	0	Parent=Os03t0323900-01
Chr03	irgsp1_rep	CDS	11753155	11753306	.	+	2	Parent=Os03t0323900-01
Chr03	irgsp1_rep	three_prime_UTR	11753307	11753399	.	+	.	Parent=Os03t0323900-01
Chr03	irgsp1_rep	mRNA	11753066	11753824	.	-	.	ID=Os03t0323950-00;Name=Os03t0323950-00;Locus_id=Os03g0323950;Note=Non-protein coding transcript.;Transcript_evidence=CT831410 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os03t0323950-00
Chr03	irgsp1_rep	exon	11753066	11753824	.	-	.	Parent=Os03t0323950-00
Chr03	irgsp1_rep	mRNA	11769398	11773492	.	+	.	ID=Os03t0324200-01;Name=Os03t0324200-01;Locus_id=Os03g0324200;RAP-DB Gene Symbol Synonym(s)=EIL1%2C OsEIL1%2C EIN3%2C OsEIN3;RAP-DB Gene Name Synonym(s)=ETHYLENE INSENSITIVE-LIKE GENE 1%2C EIN3-like protein 1%2C ethylene-insensitive 3%2C ETHYLENE INSENSITIVE3-LIKE 1%2C EIN3-LIKE 1%2C EIN3-like 1;CGSNL Gene Symbol=EIL1;CGSNL Gene Name=ETHYLENE INSENSITIVE-LIKE GENE 1;Oryzabase Gene Symbol Synonym(s)=OsEIL1%2C EIN3%2C OsEIN3%2C MHZ6%2C OsEIL1a%2C EIL1a;Oryzabase Gene Name Synonym(s)=EIN3-like protein 1%2C ethylene-insensitive 3%2C ETHYLENE INSENSITIVE3-LIKE 1%2C EIN3-LIKE 1%2C EIN3-like 1;Note=Transcription factor involved in the ethylene signal transduction pathway%2C Positive regulator of ethylene response%2C Wound signaling;Transcript_evidence=AK101076,AB074971;ORF_evidence=Q8W3M0;GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Cellular Component: nucleus (GO:0005634);InterPro=Ethylene insensitive 3-like protein%2C DNA-binding domain (IPR023278);NIAS_FLcDNA=J033024C06;Manual Curation=August 20%2C 2014;Literature_PMID=22977279,19798512;Oryzabase=6125;TENOR=Os03t0324200-01
Chr03	irgsp1_rep	five_prime_UTR	11769398	11769651	.	+	.	Parent=Os03t0324200-01
Chr03	irgsp1_rep	five_prime_UTR	11771176	11771257	.	+	.	Parent=Os03t0324200-01
Chr03	irgsp1_rep	CDS	11771258	11773192	.	+	0	Parent=Os03t0324200-01
Chr03	irgsp1_rep	three_prime_UTR	11773193	11773492	.	+	.	Parent=Os03t0324200-01
Chr03	irgsp1_rep	mRNA	11769669	11772658	.	+	.	ID=Os03t0324200-02;Name=Os03t0324200-02;Locus_id=Os03g0324200;CGSNL Gene Symbol=EIL1;CGSNL Gene Name=ETHYLENE INSENSITIVE-LIKE GENE 1;Oryzabase Gene Symbol Synonym(s)=OsEIL1%2C EIN3%2C OsEIN3%2C MHZ6%2C OsEIL1a%2C EIL1a;Oryzabase Gene Name Synonym(s)=EIN3-like protein 1%2C ethylene-insensitive 3%2C ETHYLENE INSENSITIVE3-LIKE 1%2C EIN3-LIKE 1%2C EIN3-like 1;Note=Similar to cDNA clone:J033123C05%2C full insert sequence.;Transcript_evidence=AK068429 (DDBJ%2C Best hit);ORF_evidence=Q3Y6P4 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Ethylene insensitive 3 (IPR006957),Ethylene insensitive 3-like protein%2C DNA-binding domain (IPR023278);NIAS_FLcDNA=J013154I08;Oryzabase=6125;TENOR=Os03t0324200-02
Chr03	irgsp1_rep	five_prime_UTR	11769669	11771257	.	+	.	Parent=Os03t0324200-02
Chr03	irgsp1_rep	CDS	11771258	11772658	.	+	0	Parent=Os03t0324200-02
Chr03	irgsp1_rep	mRNA	11774230	11778272	.	+	.	ID=Os03t0324300-02;Name=Os03t0324300-02;Locus_id=Os03g0324300;Oryzabase Gene Symbol Synonym(s)=EIL1%2C OsEIL1%2C MHZ6/OsEIL1%2C MHZ6;Oryzabase Gene Name Synonym(s)=ETHYLENE INSENSITIVE3-LIKE1%2C ETHYLENE INSENSITIVE3-LIKE 1%2C maohuzi6%2C maohuzi 6;Note=Similar to ETHYLENE-INSENSITIVE3-like 1 protein.;Transcript_evidence=AK103227 (DDBJ%2C Best hit);ORF_evidence=Q3Y6P4 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Ethylene insensitive 3 (IPR006957),Ethylene insensitive 3-like protein%2C DNA-binding domain (IPR023278);NIAS_FLcDNA=J033123C05;Oryzabase=21533;Expression=AK103227;TENOR=Os03t0324300-02;KEGG=Os03t0324300-02;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	11774230	11774476	.	+	.	Parent=Os03t0324300-02
Chr03	irgsp1_rep	five_prime_UTR	11776001	11776082	.	+	.	Parent=Os03t0324300-02
Chr03	irgsp1_rep	CDS	11776083	11778008	.	+	0	Parent=Os03t0324300-02
Chr03	irgsp1_rep	three_prime_UTR	11778009	11778272	.	+	.	Parent=Os03t0324300-02
Chr03	irgsp1_rep	mRNA	11774347	11778954	.	+	.	ID=Os03t0324300-03;Name=Os03t0324300-03;Locus_id=Os03g0324300;Oryzabase Gene Symbol Synonym(s)=EIL1%2C OsEIL1%2C MHZ6/OsEIL1%2C MHZ6;Oryzabase Gene Name Synonym(s)=ETHYLENE INSENSITIVE3-LIKE1%2C ETHYLENE INSENSITIVE3-LIKE 1%2C maohuzi6%2C maohuzi 6;Note=Similar to EIL3.;Transcript_evidence=AK072465 (DDBJ%2C Best hit);ORF_evidence=Q3Y6P4 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Ethylene insensitive 3 (IPR006957),Ethylene insensitive 3-like protein%2C DNA-binding domain (IPR023278);NIAS_FLcDNA=J023116C13;Oryzabase=21533;Expression=AK072465;TENOR=Os03t0324300-03;KEGG=Os03t0324300-03;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	11774347	11774476	.	+	.	Parent=Os03t0324300-03
Chr03	irgsp1_rep	five_prime_UTR	11776001	11776082	.	+	.	Parent=Os03t0324300-03
Chr03	irgsp1_rep	CDS	11776083	11777501	.	+	0	Parent=Os03t0324300-03
Chr03	irgsp1_rep	CDS	11777841	11778008	.	+	0	Parent=Os03t0324300-03
Chr03	irgsp1_rep	three_prime_UTR	11778009	11778954	.	+	.	Parent=Os03t0324300-03
Chr03	irgsp1_rep	mRNA	11774348	11778362	.	+	.	ID=Os03t0324300-04;Name=Os03t0324300-04;Locus_id=Os03g0324300;Oryzabase Gene Symbol Synonym(s)=EIL1%2C OsEIL1%2C MHZ6/OsEIL1%2C MHZ6;Oryzabase Gene Name Synonym(s)=ETHYLENE INSENSITIVE3-LIKE1%2C ETHYLENE INSENSITIVE3-LIKE 1%2C maohuzi6%2C maohuzi 6;Note=Similar to ETHYLENE-INSENSITIVE3-like 1 protein.;Transcript_evidence=AK060826 (DDBJ%2C Best hit),AK098905 (DDBJ%2C Best hit);ORF_evidence=Q3Y6P4 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Ethylene insensitive 3 (IPR006957),Ethylene insensitive 3-like protein%2C DNA-binding domain (IPR023278);NIAS_FLcDNA=001-034-B06,J013002D08;Oryzabase=21533;TENOR=Os03t0324300-04;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	11774348	11774476	.	+	.	Parent=Os03t0324300-04
Chr03	irgsp1_rep	five_prime_UTR	11776001	11776082	.	+	.	Parent=Os03t0324300-04
Chr03	irgsp1_rep	CDS	11776083	11778008	.	+	0	Parent=Os03t0324300-04
Chr03	irgsp1_rep	three_prime_UTR	11778009	11778362	.	+	.	Parent=Os03t0324300-04
Chr03	irgsp1_rep	mRNA	11774377	11778327	.	+	.	ID=Os03t0324300-05;Name=Os03t0324300-05;Locus_id=Os03g0324300;Oryzabase Gene Symbol Synonym(s)=EIL1%2C OsEIL1%2C MHZ6/OsEIL1%2C MHZ6;Oryzabase Gene Name Synonym(s)=ETHYLENE INSENSITIVE3-LIKE1%2C ETHYLENE INSENSITIVE3-LIKE 1%2C maohuzi6%2C maohuzi 6;Note=Similar to ETHYLENE-INSENSITIVE3-like 1 protein.;Transcript_evidence=AK098987 (DDBJ%2C Best hit);ORF_evidence=Q3Y6P4 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Ethylene insensitive 3 (IPR006957),Ethylene insensitive 3-like protein%2C DNA-binding domain (IPR023278);NIAS_FLcDNA=J013095D20;Oryzabase=21533;Expression=AK098987;TENOR=Os03t0324300-05;KEGG=Os03t0324300-05;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	11774377	11774476	.	+	.	Parent=Os03t0324300-05
Chr03	irgsp1_rep	five_prime_UTR	11776001	11776082	.	+	.	Parent=Os03t0324300-05
Chr03	irgsp1_rep	CDS	11776083	11778008	.	+	0	Parent=Os03t0324300-05
Chr03	irgsp1_rep	three_prime_UTR	11778009	11778327	.	+	.	Parent=Os03t0324300-05
Chr03	irgsp1_rep	mRNA	11774494	11777483	.	+	.	ID=Os03t0324300-06;Name=Os03t0324300-06;Locus_id=Os03g0324300;Oryzabase Gene Symbol Synonym(s)=EIL1%2C OsEIL1%2C MHZ6/OsEIL1%2C MHZ6;Oryzabase Gene Name Synonym(s)=ETHYLENE INSENSITIVE3-LIKE1%2C ETHYLENE INSENSITIVE3-LIKE 1%2C maohuzi6%2C maohuzi 6;Note=Similar to cDNA clone:J033123C05%2C full insert sequence.;Transcript_evidence=AK068429 (DDBJ%2C Best hit);ORF_evidence=Q3Y6P4 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Ethylene insensitive 3 (IPR006957),Ethylene insensitive 3-like protein%2C DNA-binding domain (IPR023278);NIAS_FLcDNA=J013154I08;Oryzabase=21533;TENOR=Os03t0324300-06;KEGG=Os03t0324300-06
Chr03	irgsp1_rep	five_prime_UTR	11774494	11776082	.	+	.	Parent=Os03t0324300-06
Chr03	irgsp1_rep	CDS	11776083	11777483	.	+	0	Parent=Os03t0324300-06
Chr03	irgsp1_rep	mRNA	11798089	11802045	.	-	.	ID=Os03t0324600-01;Name=Os03t0324600-01;Locus_id=Os03g0324600;Note=NB-ARC domain containing protein.;Transcript_evidence=AK241804 (DDBJ%2C Best hit);ORF_evidence=NP_001049979.1 (RefSeq);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J065209C12;TENOR=Os03t0324600-01;KEGG=Os03t0324600-01
Chr03	irgsp1_rep	five_prime_UTR	11801525	11802045	.	-	.	Parent=Os03t0324600-01
Chr03	irgsp1_rep	CDS	11798303	11801524	.	-	0	Parent=Os03t0324600-01
Chr03	irgsp1_rep	three_prime_UTR	11798089	11798302	.	-	.	Parent=Os03t0324600-01
Chr03	irgsp1_rep	mRNA	11798313	11801222	.	+	.	ID=Os03t0324650-00;Name=Os03t0324650-00;Locus_id=Os03g0324650;Note=Non-protein coding transcript.;Transcript_evidence=BT085189 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0324650-00
Chr03	irgsp1_rep	exon	11798313	11798625	.	+	.	Parent=Os03t0324650-00
Chr03	irgsp1_rep	exon	11799178	11801222	.	+	.	Parent=Os03t0324650-00
Chr03	irgsp1_rep	mRNA	11805189	11807739	.	+	.	ID=Os03t0324700-01;Name=Os03t0324700-01;Locus_id=Os03g0324700;Note=Exostosin-like family protein.;Transcript_evidence=AK121618 (DDBJ%2C Best hit);ORF_evidence=NP_001151894.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);NIAS_FLcDNA=J033044K12;Expression=AK121618;TENOR=Os03t0324700-01;KEGG=Os03t0324700-01
Chr03	irgsp1_rep	five_prime_UTR	11805189	11805343	.	+	.	Parent=Os03t0324700-01
Chr03	irgsp1_rep	CDS	11805344	11806189	.	+	0	Parent=Os03t0324700-01
Chr03	irgsp1_rep	CDS	11806873	11807433	.	+	0	Parent=Os03t0324700-01
Chr03	irgsp1_rep	three_prime_UTR	11807434	11807739	.	+	.	Parent=Os03t0324700-01
Chr03	irgsp1_rep	mRNA	11808511	11813203	.	-	.	ID=Os03t0324800-01;Name=Os03t0324800-01;Locus_id=Os03g0324800;Note=Conserved hypothetical protein.;Transcript_evidence=AK059868 (DDBJ%2C Best hit),AK071431 (DDBJ%2C Best hit);ORF_evidence=XP_002465337.1 (RefSeq);NIAS_FLcDNA=006-207-E07,J023091M20;Expression=AK059868;TENOR=Os03t0324800-01;KEGG=Os03t0324800-01
Chr03	irgsp1_rep	five_prime_UTR	11813094	11813203	.	-	.	Parent=Os03t0324800-01
Chr03	irgsp1_rep	CDS	11813010	11813093	.	-	0	Parent=Os03t0324800-01
Chr03	irgsp1_rep	CDS	11812528	11812594	.	-	0	Parent=Os03t0324800-01
Chr03	irgsp1_rep	CDS	11812358	11812447	.	-	2	Parent=Os03t0324800-01
Chr03	irgsp1_rep	CDS	11809728	11809780	.	-	2	Parent=Os03t0324800-01
Chr03	irgsp1_rep	CDS	11809335	11809471	.	-	0	Parent=Os03t0324800-01
Chr03	irgsp1_rep	CDS	11809138	11809202	.	-	1	Parent=Os03t0324800-01
Chr03	irgsp1_rep	CDS	11808938	11808996	.	-	2	Parent=Os03t0324800-01
Chr03	irgsp1_rep	CDS	11808770	11808859	.	-	0	Parent=Os03t0324800-01
Chr03	irgsp1_rep	three_prime_UTR	11808511	11808769	.	-	.	Parent=Os03t0324800-01
Chr03	irgsp1_rep	mRNA	11816467	11818149	.	+	.	ID=Os03t0324900-01;Name=Os03t0324900-01;Locus_id=Os03g0324900;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK068144 (DDBJ%2C Best hit);ORF_evidence=NP_001149943.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J013135G08;Expression=AK068144;TENOR=Os03t0324900-01;KEGG=Os03t0324900-01 (EC:6.3.2.19)
Chr03	irgsp1_rep	five_prime_UTR	11816467	11816704	.	+	.	Parent=Os03t0324900-01
Chr03	irgsp1_rep	five_prime_UTR	11817027	11817074	.	+	.	Parent=Os03t0324900-01
Chr03	irgsp1_rep	CDS	11817075	11818037	.	+	0	Parent=Os03t0324900-01
Chr03	irgsp1_rep	three_prime_UTR	11818038	11818149	.	+	.	Parent=Os03t0324900-01
Chr03	irgsp1_rep	mRNA	11819962	11822946	.	-	.	ID=Os03t0325000-00;Name=Os03t0325000-00;Locus_id=Os03g0325000;Note=Similar to Pyruvate kinase.;Transcript_evidence=ab initio prediction;ORF_evidence=B9F878 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyruvate kinase activity (GO:0004743),Molecular Function: potassium ion binding (GO:0030955);InterPro=Pyruvate kinase (IPR001697),Pyruvate kinase-like%2C insert domain (IPR011037),Pyruvate kinase%2C barrel (IPR015793),Pyruvate kinase%2C alpha/beta (IPR015794),Pyruvate kinase%2C C-terminal (IPR015795),Pyruvate kinase%2C beta-barrel insert domain (IPR015806),Pyruvate/Phosphoenolpyruvate kinase (IPR015813),Pyruvate kinase%2C active site (IPR018209);TENOR=Os03t0325000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	11822785	11822946	.	-	0	Parent=Os03t0325000-00
Chr03	irgsp1_rep	CDS	11820714	11821175	.	-	0	Parent=Os03t0325000-00
Chr03	irgsp1_rep	CDS	11819962	11820636	.	-	0	Parent=Os03t0325000-00
Chr03	irgsp1_rep	mRNA	11827137	11830453	.	-	.	ID=Os03t0325133-00;Name=Os03t0325133-00;Locus_id=Os03g0325133;Note=Conserved hypothetical protein.;Transcript_evidence=CU861799 (DDBJ%2C Best hit);ORF_evidence=F2CUL4 (UniProt);TENOR=Os03t0325133-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	11830060	11830453	.	-	.	Parent=Os03t0325133-00
Chr03	irgsp1_rep	five_prime_UTR	11828340	11828533	.	-	.	Parent=Os03t0325133-00
Chr03	irgsp1_rep	CDS	11828339	11828339	.	-	0	Parent=Os03t0325133-00
Chr03	irgsp1_rep	CDS	11827225	11827316	.	-	2	Parent=Os03t0325133-00
Chr03	irgsp1_rep	three_prime_UTR	11827137	11827224	.	-	.	Parent=Os03t0325133-00
Chr03	irgsp1_rep	mRNA	11836594	11841914	.	-	.	ID=Os03t0325400-01;Name=Os03t0325400-01;Locus_id=Os03g0325400;Note=Hypothetical gene.;Transcript_evidence=AK064647 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=002-114-D05;Expression=AK064647;TENOR=Os03t0325400-01;KEGG=Os03t0325400-01
Chr03	irgsp1_rep	five_prime_UTR	11841833	11841914	.	-	.	Parent=Os03t0325400-01
Chr03	irgsp1_rep	CDS	11841742	11841832	.	-	0	Parent=Os03t0325400-01
Chr03	irgsp1_rep	CDS	11839826	11839897	.	-	2	Parent=Os03t0325400-01
Chr03	irgsp1_rep	CDS	11836888	11837006	.	-	2	Parent=Os03t0325400-01
Chr03	irgsp1_rep	three_prime_UTR	11836594	11836887	.	-	.	Parent=Os03t0325400-01
Chr03	irgsp1_rep	mRNA	11838970	11841217	.	+	.	ID=Os03t0325500-01;Name=Os03t0325500-01;Locus_id=Os03g0325500;CGSNL Gene Symbol=DLN85;CGSNL Gene Name=DLN REPRESSOR 85;Oryzabase Gene Symbol Synonym(s)=OsDLN85%2C OsDLN85a%2C OsDLN85b%2C DLN85a%2C DLN85b;Oryzabase Gene Name Synonym(s)=DLN repressor 85%2C DLN motif protein 85;Note=Similar to Phosphate starvation regulator protein (Regulatory protein of P- starvation acclimation response Psr1).;Transcript_evidence=AK100282 (DDBJ%2C Best hit);ORF_evidence=A2XG76 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J023074M06;Oryzabase=23182;Expression=AK100282;TENOR=Os03t0325500-01;KEGG=Os03t0325500-01
Chr03	irgsp1_rep	five_prime_UTR	11838970	11839143	.	+	.	Parent=Os03t0325500-01
Chr03	irgsp1_rep	CDS	11839247	11839460	.	+	0	Parent=Os03t0325500-01
Chr03	irgsp1_rep	CDS	11839537	11839613	.	+	2	Parent=Os03t0325500-01
Chr03	irgsp1_rep	CDS	11839737	11839794	.	+	0	Parent=Os03t0325500-01
Chr03	irgsp1_rep	CDS	11839865	11839952	.	+	2	Parent=Os03t0325500-01
Chr03	irgsp1_rep	CDS	11840022	11840091	.	+	1	Parent=Os03t0325500-01
Chr03	irgsp1_rep	CDS	11840283	11840840	.	+	0	Parent=Os03t0325500-01
Chr03	irgsp1_rep	three_prime_UTR	11840841	11841217	.	+	.	Parent=Os03t0325500-01
Chr03	irgsp1_rep	mRNA	11840491	11841194	.	+	.	ID=Os03t0325500-02;Name=Os03t0325500-02;Locus_id=Os03g0325500;CGSNL Gene Symbol=DLN85;CGSNL Gene Name=DLN REPRESSOR 85;Oryzabase Gene Symbol Synonym(s)=OsDLN85%2C OsDLN85a%2C OsDLN85b%2C DLN85a%2C DLN85b;Oryzabase Gene Name Synonym(s)=DLN repressor 85%2C DLN motif protein 85;Note=Hypothetical conserved gene.;Transcript_evidence=AK063005 (DDBJ%2C Best hit);ORF_evidence=A2XG76 (UniProt);NIAS_FLcDNA=001-109-H10;Oryzabase=23182;Expression=AK063005;TENOR=Os03t0325500-02;KEGG=Os03t0325500-02
Chr03	irgsp1_rep	five_prime_UTR	11840491	11840492	.	+	.	Parent=Os03t0325500-02
Chr03	irgsp1_rep	CDS	11840493	11840840	.	+	0	Parent=Os03t0325500-02
Chr03	irgsp1_rep	three_prime_UTR	11840841	11841194	.	+	.	Parent=Os03t0325500-02
Chr03	irgsp1_rep	mRNA	11845870	11849001	.	-	.	ID=Os03t0325600-01;Name=Os03t0325600-01;Locus_id=Os03g0325600;CGSNL Gene Symbol=WOX6;CGSNL Gene Name=WUSCHEL-LIKE HOMEOBOX 6;Oryzabase Gene Symbol Synonym(s)=OsWOX6%2C Os WOX6%2C OsWOX12B;Oryzabase Gene Name Synonym(s)=WUSCHEL-related homeobox 6;Note=Similar to WUSCHEL-related homeobox 6.;Transcript_evidence=AK111000 (DDBJ%2C Best hit);ORF_evidence=Q10M29 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);NIAS_FLcDNA=002-174-E11;Oryzabase=13223;Expression=AK111000;TENOR=Os03t0325600-01;KEGG=Os03t0325600-01
Chr03	irgsp1_rep	five_prime_UTR	11848783	11849001	.	-	.	Parent=Os03t0325600-01
Chr03	irgsp1_rep	CDS	11847990	11848782	.	-	0	Parent=Os03t0325600-01
Chr03	irgsp1_rep	CDS	11846029	11846306	.	-	2	Parent=Os03t0325600-01
Chr03	irgsp1_rep	three_prime_UTR	11845870	11846028	.	-	.	Parent=Os03t0325600-01
Chr03	irgsp1_rep	mRNA	11845236	11848837	.	-	.	ID=Os03t0325600-02;Name=Os03t0325600-02;Locus_id=Os03g0325600;CGSNL Gene Symbol=WOX6;CGSNL Gene Name=WUSCHEL-LIKE HOMEOBOX 6;Oryzabase Gene Symbol Synonym(s)=OsWOX6%2C Os WOX6%2C OsWOX12B;Oryzabase Gene Name Synonym(s)=WUSCHEL-related homeobox 6;Note=Homeodomain-like containing protein.;Transcript_evidence=AK063262 (DDBJ%2C Best hit);ORF_evidence=Q10M29 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);NIAS_FLcDNA=001-113-A08;Oryzabase=13223;Expression=AK063262;TENOR=Os03t0325600-02;KEGG=Os03t0325600-02
Chr03	irgsp1_rep	five_prime_UTR	11848783	11848837	.	-	.	Parent=Os03t0325600-02
Chr03	irgsp1_rep	CDS	11847990	11848782	.	-	0	Parent=Os03t0325600-02
Chr03	irgsp1_rep	CDS	11846131	11846306	.	-	2	Parent=Os03t0325600-02
Chr03	irgsp1_rep	CDS	11845796	11845813	.	-	0	Parent=Os03t0325600-02
Chr03	irgsp1_rep	three_prime_UTR	11845236	11845795	.	-	.	Parent=Os03t0325600-02
Chr03	irgsp1_rep	mRNA	11879152	11881744	.	+	.	ID=Os03t0325900-00;Name=Os03t0325900-00;Locus_id=Os03g0325900;Note=Ricin B lectin domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8ANG3 (UniProt);InterPro=Ricin B lectin (IPR000772),Ricin B-related lectin (IPR008997);TENOR=Os03t0325900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	11879152	11879292	.	+	0	Parent=Os03t0325900-00
Chr03	irgsp1_rep	CDS	11879393	11879515	.	+	0	Parent=Os03t0325900-00
Chr03	irgsp1_rep	CDS	11880908	11881240	.	+	0	Parent=Os03t0325900-00
Chr03	irgsp1_rep	CDS	11881311	11881433	.	+	0	Parent=Os03t0325900-00
Chr03	irgsp1_rep	CDS	11881526	11881744	.	+	0	Parent=Os03t0325900-00
Chr03	irgsp1_rep	mRNA	11883831	11884796	.	-	.	ID=Os03t0326000-01;Name=Os03t0326000-01;Locus_id=Os03g0326000;Note=Phospholipid-transporting ATPase 1 (EC 3.6.3.1) (Aminophospholipid flippase 1).;Transcript_evidence=AK059185 (DDBJ%2C Best hit);ORF_evidence=XP_002315406.1 (RefSeq);NIAS_FLcDNA=001-023-G08;TENOR=Os03t0326000-01;KEGG=Os03t0326000-01 (EC:3.6.3.1)
Chr03	irgsp1_rep	five_prime_UTR	11884795	11884796	.	-	.	Parent=Os03t0326000-01
Chr03	irgsp1_rep	CDS	11884337	11884794	.	-	0	Parent=Os03t0326000-01
Chr03	irgsp1_rep	CDS	11884040	11884250	.	-	1	Parent=Os03t0326000-01
Chr03	irgsp1_rep	three_prime_UTR	11883831	11884039	.	-	.	Parent=Os03t0326000-01
Chr03	irgsp1_rep	mRNA	11886200	11888887	.	-	.	ID=Os03t0326100-01;Name=Os03t0326100-01;Locus_id=Os03g0326100;Note=Phospholipid-transporting ATPase 1 (EC 3.6.3.1) (Aminophospholipid flippase 1).;Transcript_evidence=AK111237 (DDBJ%2C Best hit);ORF_evidence=NP_568146.1 (RefSeq);GO=Biological Process: phospholipid transport (GO:0015914),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: phospholipid-translocating ATPase activity (GO:0004012),Molecular Function: ATP binding (GO:0005524),Molecular Function: metal ion binding (GO:0046872);InterPro=ATPase%2C P-type%2C phospholipid-translocating%2C flippase (IPR006539),ATPase%2C P-type%2C ATPase-associated domain (IPR008250),ATPase%2C P-type phosphorylation site (IPR018303),HAD-like domain (IPR023214),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C  P-type%2C cytoplasmic transduction domain A (IPR023300);NIAS_FLcDNA=002-179-G01;TENOR=Os03t0326100-01;KEGG=Os03t0326100-01 (EC:3.6.3.1)
Chr03	irgsp1_rep	five_prime_UTR	11888301	11888887	.	-	.	Parent=Os03t0326100-01
Chr03	irgsp1_rep	CDS	11886858	11888300	.	-	0	Parent=Os03t0326100-01
Chr03	irgsp1_rep	three_prime_UTR	11886200	11886857	.	-	.	Parent=Os03t0326100-01
Chr03	irgsp1_rep	mRNA	11894399	11898228	.	-	.	ID=Os03t0326200-01;Name=Os03t0326200-01;Locus_id=Os03g0326200;Note=Similar to aminophospholipid ATPase.;Transcript_evidence=AK108821 (DDBJ%2C Best hit);ORF_evidence=XP_002311928.1 (RefSeq);GO=Biological Process: phospholipid transport (GO:0015914),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: phospholipid-translocating ATPase activity (GO:0004012),Molecular Function: ATP binding (GO:0005524),Molecular Function: metal ion binding (GO:0046872);InterPro=ATPase%2C P-type%2C phospholipid-translocating%2C flippase (IPR006539),ATPase%2C P-type%2C ATPase-associated domain (IPR008250),ATPase%2C P-type phosphorylation site (IPR018303),HAD-like domain (IPR023214),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C  P-type%2C cytoplasmic transduction domain A (IPR023300);NIAS_FLcDNA=002-151-F01;TENOR=Os03t0326200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	11898129	11898228	.	-	.	Parent=Os03t0326200-01
Chr03	irgsp1_rep	CDS	11896325	11898128	.	-	0	Parent=Os03t0326200-01
Chr03	irgsp1_rep	CDS	11894979	11895303	.	-	2	Parent=Os03t0326200-01
Chr03	irgsp1_rep	CDS	11894622	11894844	.	-	1	Parent=Os03t0326200-01
Chr03	irgsp1_rep	three_prime_UTR	11894399	11894621	.	-	.	Parent=Os03t0326200-01
Chr03	irgsp1_rep	mRNA	11893128	11898155	.	-	.	ID=Os03t0326200-02;Name=Os03t0326200-02;Locus_id=Os03g0326200;Note=Similar to aminophospholipid ATPase.;Transcript_evidence=AK099837 (DDBJ%2C Best hit);ORF_evidence=XP_002311928.1 (RefSeq);GO=Biological Process: phospholipid transport (GO:0015914),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: phospholipid-translocating ATPase activity (GO:0004012),Molecular Function: ATP binding (GO:0005524),Molecular Function: metal ion binding (GO:0046872);InterPro=ATPase%2C P-type%2C phospholipid-translocating%2C flippase (IPR006539),ATPase%2C P-type%2C ATPase-associated domain (IPR008250),ATPase%2C P-type phosphorylation site (IPR018303),HAD-like domain (IPR023214),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C  P-type%2C cytoplasmic transduction domain A (IPR023300);NIAS_FLcDNA=J013106L05;Expression=AK099837;TENOR=Os03t0326200-02;KEGG=Os03t0326200-02
Chr03	irgsp1_rep	five_prime_UTR	11898129	11898155	.	-	.	Parent=Os03t0326200-02
Chr03	irgsp1_rep	CDS	11896325	11898128	.	-	0	Parent=Os03t0326200-02
Chr03	irgsp1_rep	CDS	11894909	11895303	.	-	2	Parent=Os03t0326200-02
Chr03	irgsp1_rep	three_prime_UTR	11893128	11894908	.	-	.	Parent=Os03t0326200-02
Chr03	irgsp1_rep	mRNA	11902823	11907356	.	-	.	ID=Os03t0326300-01;Name=Os03t0326300-01;Locus_id=Os03g0326300;Oryzabase Gene Symbol Synonym(s)=OsRFP;Oryzabase Gene Name Synonym(s)=RING finger protein;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=AK066058 (DDBJ%2C Best hit);ORF_evidence=B9F883 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J013050C14;Oryzabase=21150;Expression=AK066058;TENOR=Os03t0326300-01;KEGG=Os03t0326300-01
Chr03	irgsp1_rep	five_prime_UTR	11907227	11907356	.	-	.	Parent=Os03t0326300-01
Chr03	irgsp1_rep	five_prime_UTR	11906478	11906681	.	-	.	Parent=Os03t0326300-01
Chr03	irgsp1_rep	CDS	11906165	11906477	.	-	0	Parent=Os03t0326300-01
Chr03	irgsp1_rep	CDS	11904252	11904292	.	-	2	Parent=Os03t0326300-01
Chr03	irgsp1_rep	CDS	11903138	11904121	.	-	0	Parent=Os03t0326300-01
Chr03	irgsp1_rep	three_prime_UTR	11902823	11903137	.	-	.	Parent=Os03t0326300-01
Chr03	irgsp1_rep	mRNA	11902874	11907351	.	-	.	ID=Os03t0326300-02;Name=Os03t0326300-02;Locus_id=Os03g0326300;Oryzabase Gene Symbol Synonym(s)=OsRFP;Oryzabase Gene Name Synonym(s)=RING finger protein;Note=Hypothetical conserved gene.;Transcript_evidence=AK067657 (DDBJ%2C Best hit);ORF_evidence=B9F883 (UniProt);NIAS_FLcDNA=J013115O15;Oryzabase=21150;Expression=AK067657;TENOR=Os03t0326300-02;KEGG=Os03t0326300-02
Chr03	irgsp1_rep	five_prime_UTR	11907227	11907351	.	-	.	Parent=Os03t0326300-02
Chr03	irgsp1_rep	five_prime_UTR	11906478	11906681	.	-	.	Parent=Os03t0326300-02
Chr03	irgsp1_rep	CDS	11906130	11906477	.	-	0	Parent=Os03t0326300-02
Chr03	irgsp1_rep	three_prime_UTR	11904252	11906129	.	-	.	Parent=Os03t0326300-02
Chr03	irgsp1_rep	three_prime_UTR	11902874	11904121	.	-	.	Parent=Os03t0326300-02
Chr03	irgsp1_rep	mRNA	11902854	11905892	.	-	.	ID=Os03t0326300-03;Name=Os03t0326300-03;Locus_id=Os03g0326300;Oryzabase Gene Symbol Synonym(s)=OsRFP;Oryzabase Gene Name Synonym(s)=RING finger protein;Note=Hypothetical conserved gene.;Transcript_evidence=AK060759 (DDBJ%2C Best hit);ORF_evidence=B9F883 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=001-032-H11;Oryzabase=21150;Expression=AK060759;TENOR=Os03t0326300-03;KEGG=Os03t0326300-03
Chr03	irgsp1_rep	five_prime_UTR	11904324	11905892	.	-	.	Parent=Os03t0326300-03
Chr03	irgsp1_rep	CDS	11904252	11904323	.	-	0	Parent=Os03t0326300-03
Chr03	irgsp1_rep	CDS	11903138	11904121	.	-	0	Parent=Os03t0326300-03
Chr03	irgsp1_rep	three_prime_UTR	11902854	11903137	.	-	.	Parent=Os03t0326300-03
Chr03	irgsp1_rep	mRNA	11903084	11906599	.	+	.	ID=Os03t0326350-00;Name=Os03t0326350-00;Locus_id=Os03g0326350;Note=Hypothetical gene.;Transcript_evidence=BT084335 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0326350-00;KEGG=Os03t0326350-00
Chr03	irgsp1_rep	five_prime_UTR	11903084	11903427	.	+	.	Parent=Os03t0326350-00
Chr03	irgsp1_rep	CDS	11903428	11903655	.	+	0	Parent=Os03t0326350-00
Chr03	irgsp1_rep	three_prime_UTR	11903656	11903949	.	+	.	Parent=Os03t0326350-00
Chr03	irgsp1_rep	three_prime_UTR	11904049	11904145	.	+	.	Parent=Os03t0326350-00
Chr03	irgsp1_rep	three_prime_UTR	11906148	11906599	.	+	.	Parent=Os03t0326350-00
Chr03	irgsp1_rep	mRNA	11919332	11920433	.	-	.	ID=Os03t0326500-01;Name=Os03t0326500-01;Locus_id=Os03g0326500;Note=Similar to Thioredoxin-like 1.;Transcript_evidence=AK058426 (DDBJ%2C Best hit);ORF_evidence=B6U6B7 (UniProt);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Thioredoxin (IPR005746);NIAS_FLcDNA=001-015-E02;Expression=AK058426;TENOR=Os03t0326500-01;KEGG=Os03t0326500-01
Chr03	irgsp1_rep	five_prime_UTR	11920432	11920433	.	-	.	Parent=Os03t0326500-01
Chr03	irgsp1_rep	CDS	11920369	11920431	.	-	0	Parent=Os03t0326500-01
Chr03	irgsp1_rep	CDS	11919604	11919873	.	-	0	Parent=Os03t0326500-01
Chr03	irgsp1_rep	three_prime_UTR	11919332	11919603	.	-	.	Parent=Os03t0326500-01
Chr03	irgsp1_rep	mRNA	11924471	11929717	.	-	.	ID=Os03t0326600-01;Name=Os03t0326600-01;Locus_id=Os03g0326600;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK107632 (DDBJ%2C Best hit);ORF_evidence=NP_172394.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=002-131-E05;Expression=AK107632;TENOR=Os03t0326600-01;KEGG=Os03t0326600-01
Chr03	irgsp1_rep	five_prime_UTR	11929687	11929717	.	-	.	Parent=Os03t0326600-01
Chr03	irgsp1_rep	CDS	11929454	11929686	.	-	0	Parent=Os03t0326600-01
Chr03	irgsp1_rep	CDS	11929211	11929282	.	-	1	Parent=Os03t0326600-01
Chr03	irgsp1_rep	CDS	11928865	11929071	.	-	1	Parent=Os03t0326600-01
Chr03	irgsp1_rep	CDS	11928043	11928124	.	-	1	Parent=Os03t0326600-01
Chr03	irgsp1_rep	CDS	11927765	11927947	.	-	0	Parent=Os03t0326600-01
Chr03	irgsp1_rep	CDS	11927518	11927676	.	-	0	Parent=Os03t0326600-01
Chr03	irgsp1_rep	CDS	11927270	11927440	.	-	0	Parent=Os03t0326600-01
Chr03	irgsp1_rep	CDS	11926582	11926669	.	-	0	Parent=Os03t0326600-01
Chr03	irgsp1_rep	CDS	11926409	11926467	.	-	2	Parent=Os03t0326600-01
Chr03	irgsp1_rep	CDS	11926116	11926181	.	-	0	Parent=Os03t0326600-01
Chr03	irgsp1_rep	CDS	11925369	11925452	.	-	0	Parent=Os03t0326600-01
Chr03	irgsp1_rep	three_prime_UTR	11925281	11925368	.	-	.	Parent=Os03t0326600-01
Chr03	irgsp1_rep	three_prime_UTR	11924471	11924743	.	-	.	Parent=Os03t0326600-01
Chr03	irgsp1_rep	mRNA	11937445	11939473	.	-	.	ID=Os03t0327100-01;Name=Os03t0327100-01;Locus_id=Os03g0327100;CGSNL Gene Symbol=CUC1;CGSNL Gene Name=CUP SHAPED COTYLEDON 1;Oryzabase Gene Symbol Synonym(s)=ONAC039%2C ONAC39%2C NAC39%2C OsCUC1%2C DLN86%2C OsDLN86;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 039%2C NAC domain-containing protein 39%2C CUP SHAPED COTYLEDON1%2C DLN repressor 86%2C DLN motif protein 86;Note=Similar to CUC1.;Transcript_evidence=AK065989 (DDBJ%2C Best hit);ORF_evidence=NP_001147731.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=J013046E14;Oryzabase=11479;Expression=AK065989;TENOR=Os03t0327100-01;KEGG=Os03t0327100-01
Chr03	irgsp1_rep	five_prime_UTR	11939295	11939473	.	-	.	Parent=Os03t0327100-01
Chr03	irgsp1_rep	CDS	11939093	11939294	.	-	0	Parent=Os03t0327100-01
Chr03	irgsp1_rep	CDS	11938715	11938992	.	-	2	Parent=Os03t0327100-01
Chr03	irgsp1_rep	CDS	11937984	11938580	.	-	0	Parent=Os03t0327100-01
Chr03	irgsp1_rep	three_prime_UTR	11937445	11937983	.	-	.	Parent=Os03t0327100-01
Chr03	irgsp1_rep	mRNA	11957336	11959565	.	-	.	ID=Os03t0327600-01;Name=Os03t0327600-01;Locus_id=Os03g0327600;RAP-DB Gene Symbol Synonym(s)=OsEULD1b;RAP-DB Gene Name Synonym(s)=Euonymus lectin D1b;Note=D-type euonymus-related lectin (EUL)%2C "Response to salt and drought stress%2C hormone treatment"%2C  Response to biotic treatment;Transcript_evidence=AK069815;ORF_evidence=Q10M12;InterPro=Ricin B-like lectins (IPR035992);NIAS_FLcDNA=J023031K10;Manual Curation=March 27%2C 2020;Literature_PMID=32194594;Expression=AK069815;TENOR=Os03t0327600-01;KEGG=Os03t0327600-01;Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737)
Chr03	irgsp1_rep	five_prime_UTR	11959492	11959565	.	-	.	Parent=Os03t0327600-01
Chr03	irgsp1_rep	CDS	11959183	11959491	.	-	0	Parent=Os03t0327600-01
Chr03	irgsp1_rep	CDS	11958567	11959073	.	-	0	Parent=Os03t0327600-01
Chr03	irgsp1_rep	CDS	11958229	11958457	.	-	0	Parent=Os03t0327600-01
Chr03	irgsp1_rep	CDS	11957978	11957979	.	-	2	Parent=Os03t0327600-01
Chr03	irgsp1_rep	three_prime_UTR	11957336	11957977	.	-	.	Parent=Os03t0327600-01
Chr03	irgsp1_rep	mRNA	11962246	11966697	.	+	.	ID=Os03t0327700-01;Name=Os03t0327700-01;Locus_id=Os03g0327700;Note=Similar to H0716A07.9 protein.;Transcript_evidence=AK120305 (DDBJ%2C Best hit);ORF_evidence=Q01MR4 (UniProt);NIAS_FLcDNA=J013052N11;TENOR=Os03t0327700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	11962246	11962757	.	+	.	Parent=Os03t0327700-01
Chr03	irgsp1_rep	five_prime_UTR	11966343	11966435	.	+	.	Parent=Os03t0327700-01
Chr03	irgsp1_rep	CDS	11966436	11966697	.	+	0	Parent=Os03t0327700-01
Chr03	irgsp1_rep	mRNA	11962924	11963397	.	+	.	ID=Os03t0327751-00;Name=Os03t0327751-00;Locus_id=Os03g0327751;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8H7M2 (UniProt);TENOR=Os03t0327751-00
Chr03	irgsp1_rep	CDS	11962924	11963397	.	+	0	Parent=Os03t0327751-00
Chr03	irgsp1_rep	mRNA	11973989	11976381	.	-	.	ID=Os03t0327800-01;Name=Os03t0327800-01;Locus_id=Os03g0327800;RAP-DB Gene Symbol Synonym(s)=NAC58%2C OsNAP%2C ONAC058%2C ONAC58%2C PS1;RAP-DB Gene Name Synonym(s)=NAC DOMAIN-CONTAINING PROTEIN 58%2C NAC Family Transcription Factor OsNAP%2C NAC domain-containing protein 058%2C NAC domain-containing protein 58%2C prematurely senile 1;CGSNL Gene Symbol=NAC58;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 58;Oryzabase Gene Symbol Synonym(s)=OsNAP%2C NAP%2C ONAC058%2C ONAC58%2C Os PS1%2C PS1%2C OsCTb1%2C CTb1;Oryzabase Gene Name Synonym(s)=NAC Family Transcription Factor OsNAP%2C NAC domain-containing protein 058%2C NAC domain-containing protein 58%2C prematurely senile 1;Note=NAC Family transcriptional activator%2C Abiotic stress response%2C Positive regulator of leaf senescence;Transcript_evidence=AK243514;ORF_evidence=Q8H7M1;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=NAC domain (IPR003441);NIAS_FLcDNA=J100075D15;Manual Curation=November 20%2C 2014;Literature_PMID=24399239,24028154;Oryzabase=15000;TENOR=Os03t0327800-01;KEGG=Os03t0327800-01
Chr03	irgsp1_rep	five_prime_UTR	11976211	11976381	.	-	.	Parent=Os03t0327800-01
Chr03	irgsp1_rep	CDS	11976045	11976210	.	-	0	Parent=Os03t0327800-01
Chr03	irgsp1_rep	CDS	11975634	11975950	.	-	2	Parent=Os03t0327800-01
Chr03	irgsp1_rep	CDS	11974421	11975116	.	-	0	Parent=Os03t0327800-01
Chr03	irgsp1_rep	three_prime_UTR	11973989	11974420	.	-	.	Parent=Os03t0327800-01
Chr03	irgsp1_rep	mRNA	11993709	11994653	.	+	.	ID=Os03t0327900-00;Name=Os03t0327900-00;Locus_id=Os03g0327900;Note=Conserved hypothetical protein.;Transcript_evidence=EU963434 (DDBJ);ORF_evidence=Q8H7M0 (UniProt);TENOR=Os03t0327900-00
Chr03	irgsp1_rep	five_prime_UTR	11993709	11994090	.	+	.	Parent=Os03t0327900-00
Chr03	irgsp1_rep	five_prime_UTR	11994209	11994246	.	+	.	Parent=Os03t0327900-00
Chr03	irgsp1_rep	CDS	11994247	11994564	.	+	0	Parent=Os03t0327900-00
Chr03	irgsp1_rep	three_prime_UTR	11994565	11994653	.	+	.	Parent=Os03t0327900-00
Chr03	irgsp1_rep	mRNA	12006546	12007780	.	+	.	ID=Os03t0328000-01;Name=Os03t0328000-01;Locus_id=Os03g0328000;Note=Dedicator of cytokinesis family protein.;Transcript_evidence=AK059469 (DDBJ%2C Best hit);ORF_evidence=NP_193367.7 (RefSeq);GO=Molecular Function: guanyl-nucleotide exchange factor activity (GO:0005085),Molecular Function: GTP binding (GO:0005525),Molecular Function: GTPase binding (GO:0051020);InterPro=Dedicator of cytokinesis (IPR010703);NIAS_FLcDNA=001-028-D11;Expression=AK059469;TENOR=Os03t0328000-01;KEGG=Os03t0328000-01
Chr03	irgsp1_rep	five_prime_UTR	12006546	12006547	.	+	.	Parent=Os03t0328000-01
Chr03	irgsp1_rep	CDS	12006548	12007138	.	+	0	Parent=Os03t0328000-01
Chr03	irgsp1_rep	CDS	12007257	12007511	.	+	0	Parent=Os03t0328000-01
Chr03	irgsp1_rep	three_prime_UTR	12007512	12007780	.	+	.	Parent=Os03t0328000-01
Chr03	irgsp1_rep	mRNA	12008191	12012504	.	-	.	ID=Os03t0328100-01;Name=Os03t0328100-01;Locus_id=Os03g0328100;Note=Similar to Axi 1 (Auxin-independent growth promoter)-like protein.;Transcript_evidence=AK107122 (DDBJ%2C Best hit);ORF_evidence=Q9LMF6 (UniProt);InterPro=GDP-fucose protein O-fucosyltransferase (IPR019378),O-fucosyltransferase%2C plant (IPR024709);NIAS_FLcDNA=002-124-B06;Expression=AK107122;TENOR=Os03t0328100-01;KEGG=Os03t0328100-01
Chr03	irgsp1_rep	five_prime_UTR	12012465	12012504	.	-	.	Parent=Os03t0328100-01
Chr03	irgsp1_rep	CDS	12012194	12012464	.	-	0	Parent=Os03t0328100-01
Chr03	irgsp1_rep	CDS	12011078	12011145	.	-	2	Parent=Os03t0328100-01
Chr03	irgsp1_rep	CDS	12010905	12010993	.	-	0	Parent=Os03t0328100-01
Chr03	irgsp1_rep	CDS	12010651	12010804	.	-	1	Parent=Os03t0328100-01
Chr03	irgsp1_rep	CDS	12009909	12010198	.	-	0	Parent=Os03t0328100-01
Chr03	irgsp1_rep	CDS	12009613	12009817	.	-	1	Parent=Os03t0328100-01
Chr03	irgsp1_rep	CDS	12009377	12009534	.	-	0	Parent=Os03t0328100-01
Chr03	irgsp1_rep	CDS	12008837	12009098	.	-	1	Parent=Os03t0328100-01
Chr03	irgsp1_rep	three_prime_UTR	12008816	12008836	.	-	.	Parent=Os03t0328100-01
Chr03	irgsp1_rep	three_prime_UTR	12008583	12008735	.	-	.	Parent=Os03t0328100-01
Chr03	irgsp1_rep	three_prime_UTR	12008191	12008425	.	-	.	Parent=Os03t0328100-01
Chr03	irgsp1_rep	mRNA	12019156	12020956	.	+	.	ID=Os03t0328300-01;Name=Os03t0328300-01;Locus_id=Os03g0328300;Note=Hypothetical conserved gene.;Transcript_evidence=AK241210 (DDBJ%2C Best hit);ORF_evidence=Q8H7L7 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: integral to membrane (GO:0016021);InterPro=GOLD (IPR009038);NIAS_FLcDNA=J065122M08;TENOR=Os03t0328300-01;KEGG=Os03t0328300-01
Chr03	irgsp1_rep	five_prime_UTR	12019156	12019208	.	+	.	Parent=Os03t0328300-01
Chr03	irgsp1_rep	CDS	12019209	12019634	.	+	0	Parent=Os03t0328300-01
Chr03	irgsp1_rep	CDS	12020367	12020372	.	+	0	Parent=Os03t0328300-01
Chr03	irgsp1_rep	three_prime_UTR	12020373	12020956	.	+	.	Parent=Os03t0328300-01
Chr03	irgsp1_rep	mRNA	12021878	12022283	.	-	.	ID=Os03t0328400-00;Name=Os03t0328400-00;Locus_id=Os03g0328400;Note=Similar to Apyrase GS50 (Fragment).;Transcript_evidence=AF358764 (DDBJ%2C Best hit);ORF_evidence=D3Y1I0 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Nucleoside phosphatase GDA1/CD39 (IPR000407);Expression=AF358764;TENOR=Os03t0328400-00;KEGG=Os03t0328400-00 (EC:3.6.1.15)
Chr03	irgsp1_rep	five_prime_UTR	12022282	12022283	.	-	.	Parent=Os03t0328400-00
Chr03	irgsp1_rep	CDS	12022260	12022281	.	-	0	Parent=Os03t0328400-00
Chr03	irgsp1_rep	CDS	12022059	12022171	.	-	2	Parent=Os03t0328400-00
Chr03	irgsp1_rep	three_prime_UTR	12021878	12022058	.	-	.	Parent=Os03t0328400-00
Chr03	irgsp1_rep	mRNA	12022057	12023623	.	+	.	ID=Os03t0328450-00;Name=Os03t0328450-00;Locus_id=Os03g0328450;Note=Non-protein coding transcript.;Transcript_evidence=BT017220 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0328450-00
Chr03	irgsp1_rep	exon	12022057	12022157	.	+	.	Parent=Os03t0328450-00
Chr03	irgsp1_rep	exon	12022254	12022424	.	+	.	Parent=Os03t0328450-00
Chr03	irgsp1_rep	exon	12022527	12022768	.	+	.	Parent=Os03t0328450-00
Chr03	irgsp1_rep	exon	12023523	12023623	.	+	.	Parent=Os03t0328450-00
Chr03	irgsp1_rep	mRNA	12028298	12029781	.	-	.	ID=Os03t0328501-00;Name=Os03t0328501-00;Locus_id=Os03g0328501;Note=Similar to OSIGBa0103O01.10 protein.;Transcript_evidence=AK363213 (DDBJ);ORF_evidence=A0B9Z0 (UniProt);InterPro=Protein of unknown function DUF642 (IPR006946);TENOR=Os03t0328501-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	12029442	12029781	.	-	0	Parent=Os03t0328501-00
Chr03	irgsp1_rep	CDS	12029029	12029320	.	-	2	Parent=Os03t0328501-00
Chr03	irgsp1_rep	CDS	12028298	12028601	.	-	1	Parent=Os03t0328501-00
Chr03	irgsp1_rep	mRNA	12028909	12029258	.	+	.	ID=Os03t0328600-00;Name=Os03t0328600-00;Locus_id=Os03g0328600;Note=Hypothetical protein.;Transcript_evidence=EU949280 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0328600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	12028909	12028910	.	+	.	Parent=Os03t0328600-00
Chr03	irgsp1_rep	CDS	12028911	12029258	.	+	0	Parent=Os03t0328600-00
Chr03	irgsp1_rep	mRNA	12046803	12050984	.	+	.	ID=Os03t0328900-01;Name=Os03t0328900-01;Locus_id=Os03g0328900;CGSNL Gene Symbol=C3H22;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22;Oryzabase Gene Symbol Synonym(s)=OsC3H22;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 22;Note=Similar to cDNA clone:J033099F01%2C full insert sequence.;Transcript_evidence=AK288601 (DDBJ%2C Best hit);ORF_evidence=B7ETE2 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA recognition motif domain (IPR000504),Zinc finger%2C CCCH-type (IPR000571),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J090052G18;Oryzabase=8586;TENOR=Os03t0328900-01;KEGG=Os03t0328900-01
Chr03	irgsp1_rep	five_prime_UTR	12046803	12047180	.	+	.	Parent=Os03t0328900-01
Chr03	irgsp1_rep	CDS	12047181	12048163	.	+	0	Parent=Os03t0328900-01
Chr03	irgsp1_rep	CDS	12048249	12048428	.	+	1	Parent=Os03t0328900-01
Chr03	irgsp1_rep	CDS	12048533	12048715	.	+	1	Parent=Os03t0328900-01
Chr03	irgsp1_rep	CDS	12048827	12048909	.	+	1	Parent=Os03t0328900-01
Chr03	irgsp1_rep	CDS	12049111	12049371	.	+	2	Parent=Os03t0328900-01
Chr03	irgsp1_rep	CDS	12049472	12049586	.	+	2	Parent=Os03t0328900-01
Chr03	irgsp1_rep	CDS	12049743	12049967	.	+	1	Parent=Os03t0328900-01
Chr03	irgsp1_rep	CDS	12050048	12050084	.	+	1	Parent=Os03t0328900-01
Chr03	irgsp1_rep	three_prime_UTR	12050085	12050126	.	+	.	Parent=Os03t0328900-01
Chr03	irgsp1_rep	three_prime_UTR	12050243	12050984	.	+	.	Parent=Os03t0328900-01
Chr03	irgsp1_rep	mRNA	12047013	12050524	.	+	.	ID=Os03t0328900-02;Name=Os03t0328900-02;Locus_id=Os03g0328900;CGSNL Gene Symbol=C3H22;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22;Oryzabase Gene Symbol Synonym(s)=OsC3H22;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 22;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK102616 (DDBJ%2C Best hit);ORF_evidence=B7F3U2 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA recognition motif domain (IPR000504),Zinc finger%2C CCCH-type (IPR000571),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033099F01;Oryzabase=8586;Expression=AK102616;TENOR=Os03t0328900-02;KEGG=Os03t0328900-02
Chr03	irgsp1_rep	five_prime_UTR	12047013	12047180	.	+	.	Parent=Os03t0328900-02
Chr03	irgsp1_rep	CDS	12047181	12048163	.	+	0	Parent=Os03t0328900-02
Chr03	irgsp1_rep	CDS	12048249	12048428	.	+	1	Parent=Os03t0328900-02
Chr03	irgsp1_rep	CDS	12048533	12048715	.	+	1	Parent=Os03t0328900-02
Chr03	irgsp1_rep	CDS	12048827	12048909	.	+	1	Parent=Os03t0328900-02
Chr03	irgsp1_rep	CDS	12049111	12049371	.	+	2	Parent=Os03t0328900-02
Chr03	irgsp1_rep	CDS	12049472	12049586	.	+	2	Parent=Os03t0328900-02
Chr03	irgsp1_rep	CDS	12049743	12049967	.	+	1	Parent=Os03t0328900-02
Chr03	irgsp1_rep	CDS	12050051	12050084	.	+	1	Parent=Os03t0328900-02
Chr03	irgsp1_rep	three_prime_UTR	12050085	12050126	.	+	.	Parent=Os03t0328900-02
Chr03	irgsp1_rep	three_prime_UTR	12050243	12050524	.	+	.	Parent=Os03t0328900-02
Chr03	irgsp1_rep	mRNA	12068148	12071332	.	+	.	ID=Os03t0329200-01;Name=Os03t0329200-01;Locus_id=Os03g0329200;CGSNL Gene Symbol=C3H23;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 23;Oryzabase Gene Symbol Synonym(s)=OsC3H23;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 23;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK102918 (DDBJ%2C Best hit);ORF_evidence=B7ETE2 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA recognition motif domain (IPR000504),Zinc finger%2C CCCH-type (IPR000571),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033114B10;Oryzabase=8587;Expression=AK102918;TENOR=Os03t0329200-01;KEGG=Os03t0329200-01
Chr03	irgsp1_rep	five_prime_UTR	12068148	12068476	.	+	.	Parent=Os03t0329200-01
Chr03	irgsp1_rep	CDS	12068477	12069441	.	+	0	Parent=Os03t0329200-01
Chr03	irgsp1_rep	CDS	12069529	12069705	.	+	1	Parent=Os03t0329200-01
Chr03	irgsp1_rep	CDS	12069820	12070005	.	+	1	Parent=Os03t0329200-01
Chr03	irgsp1_rep	CDS	12070157	12070236	.	+	1	Parent=Os03t0329200-01
Chr03	irgsp1_rep	CDS	12070354	12070620	.	+	2	Parent=Os03t0329200-01
Chr03	irgsp1_rep	CDS	12070711	12070822	.	+	2	Parent=Os03t0329200-01
Chr03	irgsp1_rep	CDS	12070968	12071183	.	+	1	Parent=Os03t0329200-01
Chr03	irgsp1_rep	CDS	12071287	12071317	.	+	1	Parent=Os03t0329200-01
Chr03	irgsp1_rep	three_prime_UTR	12071318	12071332	.	+	.	Parent=Os03t0329200-01
Chr03	irgsp1_rep	mRNA	12070980	12071893	.	+	.	ID=Os03t0329200-02;Name=Os03t0329200-02;Locus_id=Os03g0329200;CGSNL Gene Symbol=C3H23;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 23;Oryzabase Gene Symbol Synonym(s)=OsC3H23;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 23;Note=Similar to cDNA clone:J013002B05%2C full insert sequence.;Transcript_evidence=AK064318 (DDBJ%2C Best hit);ORF_evidence=B7F3U2 (UniProt);NIAS_FLcDNA=002-107-D03;Oryzabase=8587;Expression=AK064318;TENOR=Os03t0329200-02;KEGG=Os03t0329200-02
Chr03	irgsp1_rep	five_prime_UTR	12070980	12070980	.	+	.	Parent=Os03t0329200-02
Chr03	irgsp1_rep	CDS	12070981	12071183	.	+	0	Parent=Os03t0329200-02
Chr03	irgsp1_rep	CDS	12071287	12071317	.	+	1	Parent=Os03t0329200-02
Chr03	irgsp1_rep	three_prime_UTR	12071318	12071362	.	+	.	Parent=Os03t0329200-02
Chr03	irgsp1_rep	three_prime_UTR	12071469	12071893	.	+	.	Parent=Os03t0329200-02
Chr03	irgsp1_rep	mRNA	12104108	12108324	.	-	.	ID=Os03t0329500-01;Name=Os03t0329500-01;Locus_id=Os03g0329500;CGSNL Gene Symbol=CEL9D;CGSNL Gene Name=CELLULASE 9D;Oryzabase Gene Symbol Synonym(s)=OsCel9D%2C Cel9D%2C OsGLU1%2C OsGH9A1%2C GH9A1;Oryzabase Gene Name Synonym(s)=Endoglucanase 9%2C Endo-1%2C 4-beta glucanase 9%2C glycoside hydrolase OsGH9A1%2C glycoside hydrolase 9A1;Note=Similar to Endo-1%2C4-beta-glucanase (EC 3.2.1.4).;Transcript_evidence=AK102748 (DDBJ%2C Best hit);ORF_evidence=P0C1U4 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 9 (IPR001701),Six-hairpin glycosidase-like (IPR008928),Six-hairpin glycosidase (IPR012341),Glycoside hydrolase%2C family 9%2C active site (IPR018221);NIAS_FLcDNA=J033106K04;Oryzabase=7277;Expression=AK102748;TENOR=Os03t0329500-01;KEGG=Os03t0329500-01 (EC:3.2.1.4)
Chr03	irgsp1_rep	five_prime_UTR	12108218	12108324	.	-	.	Parent=Os03t0329500-01
Chr03	irgsp1_rep	CDS	12107836	12108217	.	-	0	Parent=Os03t0329500-01
Chr03	irgsp1_rep	CDS	12106994	12107301	.	-	2	Parent=Os03t0329500-01
Chr03	irgsp1_rep	CDS	12106439	12106900	.	-	0	Parent=Os03t0329500-01
Chr03	irgsp1_rep	CDS	12105411	12105546	.	-	0	Parent=Os03t0329500-01
Chr03	irgsp1_rep	CDS	12104811	12104983	.	-	2	Parent=Os03t0329500-01
Chr03	irgsp1_rep	CDS	12104329	12104727	.	-	0	Parent=Os03t0329500-01
Chr03	irgsp1_rep	three_prime_UTR	12104108	12104328	.	-	.	Parent=Os03t0329500-01
Chr03	irgsp1_rep	mRNA	12117813	12122998	.	+	.	ID=Os03t0329700-01;Name=Os03t0329700-01;Locus_id=Os03g0329700;Note=Similar to predicted protein.;Transcript_evidence=AK242883 (DDBJ%2C Best hit);ORF_evidence=Q10LZ2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J090079D13;TENOR=Os03t0329700-01;KEGG=Os03t0329700-01
Chr03	irgsp1_rep	five_prime_UTR	12117813	12118230	.	+	.	Parent=Os03t0329700-01
Chr03	irgsp1_rep	CDS	12118231	12118345	.	+	0	Parent=Os03t0329700-01
Chr03	irgsp1_rep	CDS	12118623	12118749	.	+	2	Parent=Os03t0329700-01
Chr03	irgsp1_rep	CDS	12118836	12118907	.	+	1	Parent=Os03t0329700-01
Chr03	irgsp1_rep	CDS	12119012	12119086	.	+	1	Parent=Os03t0329700-01
Chr03	irgsp1_rep	CDS	12119165	12119236	.	+	1	Parent=Os03t0329700-01
Chr03	irgsp1_rep	CDS	12119333	12119494	.	+	1	Parent=Os03t0329700-01
Chr03	irgsp1_rep	CDS	12119588	12119662	.	+	1	Parent=Os03t0329700-01
Chr03	irgsp1_rep	CDS	12119747	12119818	.	+	1	Parent=Os03t0329700-01
Chr03	irgsp1_rep	CDS	12119925	12119996	.	+	1	Parent=Os03t0329700-01
Chr03	irgsp1_rep	CDS	12120098	12120166	.	+	1	Parent=Os03t0329700-01
Chr03	irgsp1_rep	CDS	12120262	12120336	.	+	1	Parent=Os03t0329700-01
Chr03	irgsp1_rep	CDS	12120441	12120512	.	+	1	Parent=Os03t0329700-01
Chr03	irgsp1_rep	CDS	12120603	12120737	.	+	1	Parent=Os03t0329700-01
Chr03	irgsp1_rep	CDS	12120824	12121299	.	+	1	Parent=Os03t0329700-01
Chr03	irgsp1_rep	CDS	12121382	12121891	.	+	2	Parent=Os03t0329700-01
Chr03	irgsp1_rep	CDS	12121988	12122223	.	+	2	Parent=Os03t0329700-01
Chr03	irgsp1_rep	CDS	12122312	12122824	.	+	0	Parent=Os03t0329700-01
Chr03	irgsp1_rep	three_prime_UTR	12122825	12122998	.	+	.	Parent=Os03t0329700-01
Chr03	irgsp1_rep	mRNA	12126320	12131242	.	+	.	ID=Os03t0329900-01;Name=Os03t0329900-01;Locus_id=Os03g0329900;RAP-DB Gene Symbol Synonym(s)=PHR1%2C OsPHR1;RAP-DB Gene Name Synonym(s)=PHOSPHATE STARVATION RESPONSE 1%2C PHOSPHATE RESPONSE1;CGSNL Gene Symbol=PHR1;CGSNL Gene Name=PHOSPHATE STARVATION RESPONSE 1;Oryzabase Gene Symbol Synonym(s)=OsPHR1;Oryzabase Gene Name Synonym(s)=PHOSPHATE RESPONSE1;Note=MYB-CC family protein%2C Pi-starvation signaling;Transcript_evidence=AK063486 (Genbank),AK109510 (Genbank);ORF_evidence=Q10LZ1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=001-116-C05,002-104-D09;Manual Curation=June 10%2C 2010;Literature_PMID=18263782;Oryzabase=9630;TENOR=Os03t0329900-01
Chr03	irgsp1_rep	five_prime_UTR	12126320	12126519	.	+	.	Parent=Os03t0329900-01
Chr03	irgsp1_rep	five_prime_UTR	12127564	12127713	.	+	.	Parent=Os03t0329900-01
Chr03	irgsp1_rep	CDS	12127714	12128232	.	+	0	Parent=Os03t0329900-01
Chr03	irgsp1_rep	CDS	12128850	12129051	.	+	0	Parent=Os03t0329900-01
Chr03	irgsp1_rep	CDS	12129162	12129238	.	+	2	Parent=Os03t0329900-01
Chr03	irgsp1_rep	CDS	12129327	12129366	.	+	0	Parent=Os03t0329900-01
Chr03	irgsp1_rep	CDS	12129662	12129713	.	+	2	Parent=Os03t0329900-01
Chr03	irgsp1_rep	CDS	12130191	12130260	.	+	1	Parent=Os03t0329900-01
Chr03	irgsp1_rep	CDS	12130564	12130890	.	+	0	Parent=Os03t0329900-01
Chr03	irgsp1_rep	three_prime_UTR	12130891	12131242	.	+	.	Parent=Os03t0329900-01
Chr03	irgsp1_rep	mRNA	12133472	12138706	.	-	.	ID=Os03t0330000-01;Name=Os03t0330000-01;Locus_id=Os03g0330000;CGSNL Gene Symbol=GAUT15;CGSNL Gene Name=GALACTURONOSYLTRANSFERASE 15;Oryzabase Gene Symbol Synonym(s)=OsGAUT15;Oryzabase Gene Name Synonym(s)=galacturonosyltransferase 15;Note=Glycosyl transferase%2C family 8 protein.;Transcript_evidence=AK066736 (DDBJ%2C Best hit);ORF_evidence=NP_001151802.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 8 (IPR002495);NIAS_FLcDNA=J013088O16;Oryzabase=23256;Expression=AK066736;TENOR=Os03t0330000-01;KEGG=Os03t0330000-01
Chr03	irgsp1_rep	five_prime_UTR	12138348	12138706	.	-	.	Parent=Os03t0330000-01
Chr03	irgsp1_rep	CDS	12138230	12138347	.	-	0	Parent=Os03t0330000-01
Chr03	irgsp1_rep	CDS	12137925	12137953	.	-	2	Parent=Os03t0330000-01
Chr03	irgsp1_rep	CDS	12137685	12137786	.	-	0	Parent=Os03t0330000-01
Chr03	irgsp1_rep	CDS	12136742	12136829	.	-	0	Parent=Os03t0330000-01
Chr03	irgsp1_rep	CDS	12136228	12136301	.	-	2	Parent=Os03t0330000-01
Chr03	irgsp1_rep	CDS	12135808	12136106	.	-	0	Parent=Os03t0330000-01
Chr03	irgsp1_rep	CDS	12135129	12135486	.	-	1	Parent=Os03t0330000-01
Chr03	irgsp1_rep	CDS	12134501	12135043	.	-	0	Parent=Os03t0330000-01
Chr03	irgsp1_rep	CDS	12134038	12134322	.	-	0	Parent=Os03t0330000-01
Chr03	irgsp1_rep	three_prime_UTR	12133472	12134037	.	-	.	Parent=Os03t0330000-01
Chr03	irgsp1_rep	mRNA	12145860	12150208	.	+	.	ID=Os03t0330200-00;Name=Os03t0330200-00;Locus_id=Os03g0330200;Note=2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) (Phosphoglyceromutase) (BPG-independent PGAM) (PGAM-I).;Transcript_evidence=EU964077 (DDBJ);ORF_evidence=P35493 (UniProt);GO=Biological Process: glucose catabolic process (GO:0006007),Biological Process: metabolic process (GO:0008152),Cellular Component: cytoplasm (GO:0005737),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphoglycerate mutase activity (GO:0004619),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: metal ion binding (GO:0046872);InterPro=Phosphoglycerate mutase%2C 2%2C3-bisphosphoglycerate-independent (IPR005995),Metalloenzyme (IPR006124),BPG-independent PGAM%2C N-terminal (IPR011258),Alkaline phosphatase-like%2C alpha/beta/alpha (IPR017849),Alkaline-phosphatase-like%2C core domain (IPR017850);TENOR=Os03t0330200-00;KEGG=Os03t0330200-00 (EC:5.4.2.1)
Chr03	irgsp1_rep	five_prime_UTR	12145860	12145868	.	+	.	Parent=Os03t0330200-00
Chr03	irgsp1_rep	CDS	12145869	12146027	.	+	0	Parent=Os03t0330200-00
Chr03	irgsp1_rep	CDS	12146120	12146247	.	+	0	Parent=Os03t0330200-00
Chr03	irgsp1_rep	CDS	12147742	12147892	.	+	1	Parent=Os03t0330200-00
Chr03	irgsp1_rep	CDS	12148000	12148203	.	+	0	Parent=Os03t0330200-00
Chr03	irgsp1_rep	CDS	12148695	12149119	.	+	0	Parent=Os03t0330200-00
Chr03	irgsp1_rep	CDS	12149212	12149404	.	+	1	Parent=Os03t0330200-00
Chr03	irgsp1_rep	CDS	12149551	12149646	.	+	0	Parent=Os03t0330200-00
Chr03	irgsp1_rep	CDS	12149782	12149937	.	+	0	Parent=Os03t0330200-00
Chr03	irgsp1_rep	CDS	12150039	12150203	.	+	0	Parent=Os03t0330200-00
Chr03	irgsp1_rep	three_prime_UTR	12150204	12150208	.	+	.	Parent=Os03t0330200-00
Chr03	irgsp1_rep	mRNA	12153155	12157605	.	-	.	ID=Os03t0330300-01;Name=Os03t0330300-01;Locus_id=Os03g0330300;Note=Similar to cDNA clone:001-032-H02%2C full insert sequence (Fragment).;Transcript_evidence=AK072405 (DDBJ%2C Best hit);ORF_evidence=B7E5B1 (UniProt);NIAS_FLcDNA=J023080M15;Expression=AK072405;TENOR=Os03t0330300-01;KEGG=Os03t0330300-01
Chr03	irgsp1_rep	five_prime_UTR	12157429	12157605	.	-	.	Parent=Os03t0330300-01
Chr03	irgsp1_rep	five_prime_UTR	12156688	12156795	.	-	.	Parent=Os03t0330300-01
Chr03	irgsp1_rep	CDS	12156617	12156687	.	-	0	Parent=Os03t0330300-01
Chr03	irgsp1_rep	CDS	12156165	12156350	.	-	1	Parent=Os03t0330300-01
Chr03	irgsp1_rep	CDS	12155976	12156087	.	-	1	Parent=Os03t0330300-01
Chr03	irgsp1_rep	CDS	12155220	12155246	.	-	0	Parent=Os03t0330300-01
Chr03	irgsp1_rep	three_prime_UTR	12155212	12155219	.	-	.	Parent=Os03t0330300-01
Chr03	irgsp1_rep	three_prime_UTR	12155085	12155119	.	-	.	Parent=Os03t0330300-01
Chr03	irgsp1_rep	three_prime_UTR	12154851	12155003	.	-	.	Parent=Os03t0330300-01
Chr03	irgsp1_rep	three_prime_UTR	12153155	12154558	.	-	.	Parent=Os03t0330300-01
Chr03	irgsp1_rep	mRNA	12151093	12157603	.	-	.	ID=Os03t0330300-02;Name=Os03t0330300-02;Locus_id=Os03g0330300;Note=Similar to cDNA clone:001-032-H02%2C full insert sequence (Fragment).;Transcript_evidence=AK120161 (DDBJ%2C Best hit);ORF_evidence=B7E5B1 (UniProt);NIAS_FLcDNA=J013030P08;Expression=AK120161;TENOR=Os03t0330300-02;KEGG=Os03t0330300-02
Chr03	irgsp1_rep	five_prime_UTR	12157429	12157603	.	-	.	Parent=Os03t0330300-02
Chr03	irgsp1_rep	five_prime_UTR	12156745	12156795	.	-	.	Parent=Os03t0330300-02
Chr03	irgsp1_rep	CDS	12156742	12156744	.	-	0	Parent=Os03t0330300-02
Chr03	irgsp1_rep	CDS	12152112	12153681	.	-	0	Parent=Os03t0330300-02
Chr03	irgsp1_rep	CDS	12151669	12151749	.	-	2	Parent=Os03t0330300-02
Chr03	irgsp1_rep	CDS	12151505	12151572	.	-	2	Parent=Os03t0330300-02
Chr03	irgsp1_rep	three_prime_UTR	12151093	12151504	.	-	.	Parent=Os03t0330300-02
Chr03	irgsp1_rep	mRNA	12151159	12156730	.	-	.	ID=Os03t0330300-03;Name=Os03t0330300-03;Locus_id=Os03g0330300;Note=Viral attachment protein%2C fibre shaft repeat containing protein.;Transcript_evidence=AK060756 (DDBJ%2C Best hit);ORF_evidence=B8ANY0 (UniProt);NIAS_FLcDNA=001-032-H02;Expression=AK060756;TENOR=Os03t0330300-03;KEGG=Os03t0330300-03
Chr03	irgsp1_rep	five_prime_UTR	12156688	12156730	.	-	.	Parent=Os03t0330300-03
Chr03	irgsp1_rep	CDS	12156617	12156687	.	-	0	Parent=Os03t0330300-03
Chr03	irgsp1_rep	CDS	12156165	12156350	.	-	1	Parent=Os03t0330300-03
Chr03	irgsp1_rep	CDS	12155976	12156087	.	-	1	Parent=Os03t0330300-03
Chr03	irgsp1_rep	CDS	12155843	12155876	.	-	0	Parent=Os03t0330300-03
Chr03	irgsp1_rep	CDS	12155212	12155246	.	-	2	Parent=Os03t0330300-03
Chr03	irgsp1_rep	CDS	12155085	12155119	.	-	0	Parent=Os03t0330300-03
Chr03	irgsp1_rep	CDS	12154851	12155003	.	-	1	Parent=Os03t0330300-03
Chr03	irgsp1_rep	CDS	12152112	12154558	.	-	1	Parent=Os03t0330300-03
Chr03	irgsp1_rep	CDS	12151669	12151749	.	-	2	Parent=Os03t0330300-03
Chr03	irgsp1_rep	CDS	12151505	12151572	.	-	2	Parent=Os03t0330300-03
Chr03	irgsp1_rep	three_prime_UTR	12151159	12151504	.	-	.	Parent=Os03t0330300-03
Chr03	irgsp1_rep	mRNA	12219831	12223161	.	+	.	ID=Os03t0331600-01;Name=Os03t0331600-01;Locus_id=Os03g0331600;CGSNL Gene Symbol=LCAA;CGSNL Gene Name=LOW CHLOROPHYLL ACCUMULATION A;Oryzabase Gene Symbol Synonym(s)=OsLCAA;Oryzabase Gene Name Synonym(s)=low chlorophyll accumulation A;Note=Uncharacterised protein family Ycf54 domain containing protein.;Transcript_evidence=AK063782 (DDBJ%2C Best hit);ORF_evidence=Q10LX6 (UniProt);InterPro=Uncharacterised protein family Ycf54 (IPR019616);NIAS_FLcDNA=001-121-D08;Oryzabase=21325;Expression=AK063782;TENOR=Os03t0331600-01;KEGG=Os03t0331600-01
Chr03	irgsp1_rep	five_prime_UTR	12219831	12219955	.	+	.	Parent=Os03t0331600-01
Chr03	irgsp1_rep	CDS	12219956	12220147	.	+	0	Parent=Os03t0331600-01
Chr03	irgsp1_rep	CDS	12220242	12220477	.	+	0	Parent=Os03t0331600-01
Chr03	irgsp1_rep	CDS	12222794	12222803	.	+	1	Parent=Os03t0331600-01
Chr03	irgsp1_rep	three_prime_UTR	12222804	12223161	.	+	.	Parent=Os03t0331600-01
Chr03	irgsp1_rep	mRNA	12219824	12223237	.	+	.	ID=Os03t0331600-02;Name=Os03t0331600-02;Locus_id=Os03g0331600;RAP-DB Gene Symbol Synonym(s)=CS3%2C OsLCAA;RAP-DB Gene Name Synonym(s)=chlorotic seedling 3%2C low chlorophyll accumulation A;CGSNL Gene Symbol=LCAA;CGSNL Gene Name=LOW CHLOROPHYLL ACCUMULATION A;Oryzabase Gene Symbol Synonym(s)=OsLCAA;Oryzabase Gene Name Synonym(s)=low chlorophyll accumulation A;Note=Ycf54 domain-containing protein%2C Chlorophyll biosynthesis;Transcript_evidence=Inferred from literature;ORF_evidence=Q10LX6;InterPro=Ycf54-like superfamily (IPR038409),Uncharacterised protein family Ycf54 (IPR019616);NIAS_FLcDNA=001-121-D08;Manual Curation=May 29%2C 2019;Literature_PMID=31128680,27514852;Oryzabase=21325;Expression=AK063782;TENOR=Os03t0331600-01;KEGG=Os03t0331600-01;Subcellular location=chloroplast (GO:0009507)
Chr03	irgsp1_rep	five_prime_UTR	12219824	12219955	.	+	.	Parent=Os03t0331600-02
Chr03	irgsp1_rep	CDS	12219956	12220147	.	+	0	Parent=Os03t0331600-02
Chr03	irgsp1_rep	CDS	12220242	12220477	.	+	0	Parent=Os03t0331600-02
Chr03	irgsp1_rep	CDS	12222744	12222936	.	+	1	Parent=Os03t0331600-02
Chr03	irgsp1_rep	three_prime_UTR	12222937	12223237	.	+	.	Parent=Os03t0331600-02
Chr03	irgsp1_rep	mRNA	12223921	12226096	.	-	.	ID=Os03t0331700-02;Name=Os03t0331700-02;Locus_id=Os03g0331700;CGSNL Gene Symbol=CML27;CGSNL Gene Name=CALMODULIN-LIKE PROTEIN 27;Oryzabase Gene Symbol Synonym(s)=OsCML27;Oryzabase Gene Name Synonym(s)=calmodulin-like protein 27;Note=Similar to cDNA clone:002-120-A09%2C full insert sequence.;Transcript_evidence=AK109470 (DDBJ%2C Best hit),AK109541 (DDBJ%2C Best hit);ORF_evidence=B7F2E8 (UniProt);NIAS_FLcDNA=001-128-E03,002-120-A09;Oryzabase=10509;TENOR=Os03t0331700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	12226007	12226096	.	-	.	Parent=Os03t0331700-02
Chr03	irgsp1_rep	CDS	12225434	12226006	.	-	0	Parent=Os03t0331700-02
Chr03	irgsp1_rep	three_prime_UTR	12223921	12225433	.	-	.	Parent=Os03t0331700-02
Chr03	irgsp1_rep	mRNA	12231290	12232978	.	+	.	ID=Os03t0331900-01;Name=Os03t0331900-01;Locus_id=Os03g0331900;Note=Yos1-like domain containing protein.;Transcript_evidence=AK099570 (DDBJ%2C Best hit),AK063044 (DDBJ%2C Best hit);ORF_evidence=A3AHL3 (UniProt);InterPro=Yos1-like (IPR013880);NIAS_FLcDNA=J013034O05,001-110-D09;TENOR=Os03t0331900-01
Chr03	irgsp1_rep	five_prime_UTR	12231290	12231290	.	+	.	Parent=Os03t0331900-01
Chr03	irgsp1_rep	CDS	12231291	12231459	.	+	0	Parent=Os03t0331900-01
Chr03	irgsp1_rep	CDS	12232639	12232877	.	+	2	Parent=Os03t0331900-01
Chr03	irgsp1_rep	three_prime_UTR	12232878	12232978	.	+	.	Parent=Os03t0331900-01
Chr03	irgsp1_rep	mRNA	12235398	12249872	.	-	.	ID=Os03t0332100-00;Name=Os03t0332100-00;Locus_id=Os03g0332100;CGSNL Gene Symbol=CYP714B2;CGSNL Gene Name=P-450 714B2;Oryzabase Gene Symbol Synonym(s)=CYP714B2;Oryzabase Gene Name Synonym(s)=CytoChrome P450 714B2;Note=Similar to CytoChrome P450 CYP714B3.;Transcript_evidence=EU955833 (DDBJ);ORF_evidence=B6SSW8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);Oryzabase=12264;TENOR=Os03t0332100-00;KEGG=Os03t0332100-00 (EC:1.14.15.3)
Chr03	irgsp1_rep	five_prime_UTR	12249853	12249872	.	-	.	Parent=Os03t0332100-00
Chr03	irgsp1_rep	CDS	12249507	12249852	.	-	0	Parent=Os03t0332100-00
Chr03	irgsp1_rep	CDS	12237542	12237768	.	-	2	Parent=Os03t0332100-00
Chr03	irgsp1_rep	CDS	12236620	12236867	.	-	0	Parent=Os03t0332100-00
Chr03	irgsp1_rep	CDS	12236148	12236493	.	-	1	Parent=Os03t0332100-00
Chr03	irgsp1_rep	CDS	12235542	12235973	.	-	0	Parent=Os03t0332100-00
Chr03	irgsp1_rep	three_prime_UTR	12235398	12235541	.	-	.	Parent=Os03t0332100-00
Chr03	irgsp1_rep	mRNA	12249455	12250355	.	+	.	ID=Os03t0332201-00;Name=Os03t0332201-00;Locus_id=Os03g0332201;Note=Hypothetical gene.;Transcript_evidence=CT835253 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os03t0332201-00;KEGG=Os03t0332201-00
Chr03	irgsp1_rep	five_prime_UTR	12249455	12249477	.	+	.	Parent=Os03t0332201-00
Chr03	irgsp1_rep	CDS	12249478	12249894	.	+	0	Parent=Os03t0332201-00
Chr03	irgsp1_rep	three_prime_UTR	12249895	12250355	.	+	.	Parent=Os03t0332201-00
Chr03	irgsp1_rep	mRNA	12263473	12266428	.	-	.	ID=Os03t0332400-01;Name=Os03t0332400-01;Locus_id=Os03g0332400;RAP-DB Gene Symbol Synonym(s)=GLYII-2%2C OsGLYII2%2C GLYII2%2C OsGLYII-2;RAP-DB Gene Name Synonym(s)=GLYOXALASE II-2%2C glyoxalase II-2;CGSNL Gene Symbol=GLYII-2;CGSNL Gene Name=GLYOXALASE II-2;Oryzabase Gene Symbol Synonym(s)=OsGLYII2%2C GLYII2%2C OsGLYII-2;Oryzabase Gene Name Synonym(s)=glyoxalase II-2;Note=Glyoxalase II (S-2-hydroxyacyl glutathione hydrolase)%2C Salinity adaptation%2C Abiotic stress tolerance;Transcript_evidence=AK103161;ORF_evidence=Q10LW8;GO=Biological Process: glutathione biosynthetic process (GO:0006750),Molecular Function: hydroxyacylglutathione hydrolase activity (GO:0004416),Molecular Function: zinc ion binding (GO:0008270);InterPro=Hydroxyacylglutathione hydrolase (IPR017782),Beta-lactamase-like (IPR001279);NIAS_FLcDNA=J033121D04;Manual Curation=January 15%2C 2015;Literature_PMID=25039836;Oryzabase=9363;TENOR=Os03t0332400-01;KEGG=Os03t0332400-01 (EC:3.1.2.6)
Chr03	irgsp1_rep	five_prime_UTR	12266331	12266428	.	-	.	Parent=Os03t0332400-01
Chr03	irgsp1_rep	CDS	12266284	12266330	.	-	0	Parent=Os03t0332400-01
Chr03	irgsp1_rep	CDS	12266069	12266191	.	-	1	Parent=Os03t0332400-01
Chr03	irgsp1_rep	CDS	12265484	12265645	.	-	1	Parent=Os03t0332400-01
Chr03	irgsp1_rep	CDS	12265040	12265118	.	-	1	Parent=Os03t0332400-01
Chr03	irgsp1_rep	CDS	12264853	12264966	.	-	0	Parent=Os03t0332400-01
Chr03	irgsp1_rep	CDS	12264117	12264293	.	-	0	Parent=Os03t0332400-01
Chr03	irgsp1_rep	CDS	12263818	12263892	.	-	0	Parent=Os03t0332400-01
Chr03	irgsp1_rep	three_prime_UTR	12263473	12263817	.	-	.	Parent=Os03t0332400-01
Chr03	irgsp1_rep	mRNA	12270063	12270872	.	-	.	ID=Os03t0332500-00;Name=Os03t0332500-00;Locus_id=Os03g0332500;Note=Similar to QM protein.;Transcript_evidence=AK375941 (DDBJ);ORF_evidence=Q9FVN3 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L10e (IPR001197),Ribosomal protein L10e/L16 (IPR016180),Ribosomal protein L10e%2C conserved site (IPR018255);TENOR=Os03t0332500-00;KEGG=Os03t0332500-00
Chr03	irgsp1_rep	CDS	12270325	12270872	.	-	0	Parent=Os03t0332500-00
Chr03	irgsp1_rep	CDS	12270063	12270228	.	-	1	Parent=Os03t0332500-00
Chr03	irgsp1_rep	mRNA	12271456	12273755	.	-	.	ID=Os03t0332533-01;Name=Os03t0332533-01;Locus_id=Os03g0332533;Note=Similar to Plant acid phosphatase family protein%2C expressed.;Transcript_evidence=AK243465 (DDBJ%2C Best hit);ORF_evidence=Q10LW6 (UniProt);GO=Molecular Function: acid phosphatase activity (GO:0003993);InterPro=Acid phosphatase (Class B) (IPR005519),Acid phosphatase%2C plant (IPR010028),Vegetative storage protein/acid phosphatase (IPR014403),HAD-like domain (IPR023214);NIAS_FLcDNA=J100071I16;TENOR=Os03t0332533-01;KEGG=Os03t0332533-01
Chr03	irgsp1_rep	five_prime_UTR	12273754	12273755	.	-	.	Parent=Os03t0332533-01
Chr03	irgsp1_rep	CDS	12273663	12273753	.	-	0	Parent=Os03t0332533-01
Chr03	irgsp1_rep	CDS	12273038	12273464	.	-	2	Parent=Os03t0332533-01
Chr03	irgsp1_rep	CDS	12272349	12272555	.	-	1	Parent=Os03t0332533-01
Chr03	irgsp1_rep	CDS	12271561	12271741	.	-	1	Parent=Os03t0332533-01
Chr03	irgsp1_rep	three_prime_UTR	12271456	12271560	.	-	.	Parent=Os03t0332533-01
Chr03	irgsp1_rep	mRNA	12272374	12273412	.	+	.	ID=Os03t0332566-00;Name=Os03t0332566-00;Locus_id=Os03g0332566;Note=Hypothetical gene.;Transcript_evidence=BT064591 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0332566-00
Chr03	irgsp1_rep	five_prime_UTR	12272374	12272604	.	+	.	Parent=Os03t0332566-00
Chr03	irgsp1_rep	five_prime_UTR	12272985	12273009	.	+	.	Parent=Os03t0332566-00
Chr03	irgsp1_rep	CDS	12273010	12273412	.	+	0	Parent=Os03t0332566-00
Chr03	irgsp1_rep	mRNA	12276271	12276620	.	-	.	ID=Os03t0332600-01;Name=Os03t0332600-01;Locus_id=Os03g0332600;Note=Non-protein coding transcript.;Transcript_evidence=AK058370 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-014-G05;TENOR=Os03t0332600-01
Chr03	irgsp1_rep	exon	12276271	12276620	.	-	.	Parent=Os03t0332600-01
Chr03	irgsp1_rep	mRNA	12276683	12280143	.	-	.	ID=Os03t0332700-01;Name=Os03t0332700-01;Locus_id=Os03g0332700;CGSNL Gene Symbol=ABCI3_1;CGSNL Gene Name=ABC TRANSPORTER I FAMILY MEMBER 3_1;Oryzabase Gene Symbol Synonym(s)=OsABCI3_1%2C OsABCI3_2%2C OsISC17;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCI subgroup member 3_1%2C Iron-sulfur cluster protein 17;Note=Similar to ABC Transporter%2C ATP binding component.;Transcript_evidence=AK072820 (DDBJ%2C Best hit);ORF_evidence=B4FT76 (UniProt);GO=Biological Process: transport (GO:0006810),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ATPase SufC%2C SUF system FeS cluster assembly (IPR010230),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=J023135H16;Oryzabase=12027;Expression=AK072820;TENOR=Os03t0332700-01;KEGG=Os03t0332700-01
Chr03	irgsp1_rep	five_prime_UTR	12280100	12280143	.	-	.	Parent=Os03t0332700-01
Chr03	irgsp1_rep	CDS	12279824	12280099	.	-	0	Parent=Os03t0332700-01
Chr03	irgsp1_rep	CDS	12279668	12279718	.	-	0	Parent=Os03t0332700-01
Chr03	irgsp1_rep	CDS	12278657	12278878	.	-	0	Parent=Os03t0332700-01
Chr03	irgsp1_rep	CDS	12278166	12278288	.	-	0	Parent=Os03t0332700-01
Chr03	irgsp1_rep	CDS	12277537	12277713	.	-	0	Parent=Os03t0332700-01
Chr03	irgsp1_rep	CDS	12276859	12276945	.	-	0	Parent=Os03t0332700-01
Chr03	irgsp1_rep	three_prime_UTR	12276683	12276858	.	-	.	Parent=Os03t0332700-01
Chr03	irgsp1_rep	mRNA	12288225	12291510	.	+	.	ID=Os03t0332900-01;Name=Os03t0332900-01;Locus_id=Os03g0332900;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK103073 (DDBJ%2C Best hit);ORF_evidence=C0LGW1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033118C07;Expression=AK103073;TENOR=Os03t0332900-01;KEGG=Os03t0332900-01
Chr03	irgsp1_rep	five_prime_UTR	12288225	12288302	.	+	.	Parent=Os03t0332900-01
Chr03	irgsp1_rep	five_prime_UTR	12289179	12289252	.	+	.	Parent=Os03t0332900-01
Chr03	irgsp1_rep	CDS	12289253	12290525	.	+	0	Parent=Os03t0332900-01
Chr03	irgsp1_rep	CDS	12290705	12291336	.	+	2	Parent=Os03t0332900-01
Chr03	irgsp1_rep	three_prime_UTR	12291337	12291510	.	+	.	Parent=Os03t0332900-01
Chr03	irgsp1_rep	mRNA	12291929	12296841	.	-	.	ID=Os03t0333000-01;Name=Os03t0333000-01;Locus_id=Os03g0333000;Note=Conserved hypothetical protein.;Transcript_evidence=AK109811 (DDBJ%2C Best hit);ORF_evidence=A2XGC3 (UniProt);NIAS_FLcDNA=002-147-G10;Expression=AK109811;TENOR=Os03t0333000-01;KEGG=Os03t0333000-01
Chr03	irgsp1_rep	five_prime_UTR	12296627	12296841	.	-	.	Parent=Os03t0333000-01
Chr03	irgsp1_rep	five_prime_UTR	12296193	12296232	.	-	.	Parent=Os03t0333000-01
Chr03	irgsp1_rep	CDS	12295785	12296192	.	-	0	Parent=Os03t0333000-01
Chr03	irgsp1_rep	CDS	12295188	12295250	.	-	0	Parent=Os03t0333000-01
Chr03	irgsp1_rep	CDS	12294532	12294594	.	-	0	Parent=Os03t0333000-01
Chr03	irgsp1_rep	CDS	12294293	12294355	.	-	0	Parent=Os03t0333000-01
Chr03	irgsp1_rep	CDS	12293669	12293731	.	-	0	Parent=Os03t0333000-01
Chr03	irgsp1_rep	CDS	12293499	12293558	.	-	0	Parent=Os03t0333000-01
Chr03	irgsp1_rep	CDS	12293036	12293173	.	-	0	Parent=Os03t0333000-01
Chr03	irgsp1_rep	CDS	12292261	12292677	.	-	0	Parent=Os03t0333000-01
Chr03	irgsp1_rep	three_prime_UTR	12291929	12292260	.	-	.	Parent=Os03t0333000-01
Chr03	irgsp1_rep	mRNA	12294216	12296356	.	+	.	ID=Os03t0333050-00;Name=Os03t0333050-00;Locus_id=Os03g0333050;Note=Hypothetical gene.;Transcript_evidence=AK251635 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0333050-00;KEGG=Os03t0333050-00
Chr03	irgsp1_rep	five_prime_UTR	12294216	12294900	.	+	.	Parent=Os03t0333050-00
Chr03	irgsp1_rep	five_prime_UTR	12295176	12295484	.	+	.	Parent=Os03t0333050-00
Chr03	irgsp1_rep	five_prime_UTR	12295744	12295824	.	+	.	Parent=Os03t0333050-00
Chr03	irgsp1_rep	five_prime_UTR	12295904	12295970	.	+	.	Parent=Os03t0333050-00
Chr03	irgsp1_rep	CDS	12295971	12296282	.	+	0	Parent=Os03t0333050-00
Chr03	irgsp1_rep	three_prime_UTR	12296283	12296356	.	+	.	Parent=Os03t0333050-00
Chr03	irgsp1_rep	mRNA	12297078	12307633	.	+	.	ID=Os03t0333100-01;Name=Os03t0333100-01;Locus_id=Os03g0333100;Note=Protein of unknown function DUF663 domain containing protein.;Transcript_evidence=AK101050 (DDBJ%2C Best hit);ORF_evidence=B9F8A6 (UniProt);GO=Biological Process: ribosome biogenesis (GO:0042254),Cellular Component: nucleus (GO:0005634),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Protein synthesis factor%2C GTP-binding (IPR000795),Ribosome biogenesis protein BMS1/TSR1%2C C-terminal (IPR007034),AARP2CN (IPR012948);NIAS_FLcDNA=J033010C12;Expression=AK101050;TENOR=Os03t0333100-01;KEGG=Os03t0333100-01
Chr03	irgsp1_rep	five_prime_UTR	12297078	12297153	.	+	.	Parent=Os03t0333100-01
Chr03	irgsp1_rep	CDS	12297154	12297294	.	+	0	Parent=Os03t0333100-01
Chr03	irgsp1_rep	CDS	12298061	12298207	.	+	0	Parent=Os03t0333100-01
Chr03	irgsp1_rep	CDS	12298275	12298365	.	+	0	Parent=Os03t0333100-01
Chr03	irgsp1_rep	CDS	12298479	12298597	.	+	2	Parent=Os03t0333100-01
Chr03	irgsp1_rep	CDS	12298891	12299081	.	+	0	Parent=Os03t0333100-01
Chr03	irgsp1_rep	CDS	12299552	12299762	.	+	1	Parent=Os03t0333100-01
Chr03	irgsp1_rep	CDS	12300184	12300421	.	+	0	Parent=Os03t0333100-01
Chr03	irgsp1_rep	CDS	12301056	12301441	.	+	2	Parent=Os03t0333100-01
Chr03	irgsp1_rep	CDS	12302096	12302189	.	+	0	Parent=Os03t0333100-01
Chr03	irgsp1_rep	CDS	12302453	12302637	.	+	2	Parent=Os03t0333100-01
Chr03	irgsp1_rep	CDS	12303137	12303489	.	+	0	Parent=Os03t0333100-01
Chr03	irgsp1_rep	CDS	12303749	12303842	.	+	1	Parent=Os03t0333100-01
Chr03	irgsp1_rep	CDS	12303928	12304146	.	+	0	Parent=Os03t0333100-01
Chr03	irgsp1_rep	CDS	12304876	12305115	.	+	0	Parent=Os03t0333100-01
Chr03	irgsp1_rep	CDS	12305356	12305565	.	+	0	Parent=Os03t0333100-01
Chr03	irgsp1_rep	CDS	12306381	12306647	.	+	0	Parent=Os03t0333100-01
Chr03	irgsp1_rep	CDS	12306724	12306927	.	+	0	Parent=Os03t0333100-01
Chr03	irgsp1_rep	CDS	12307008	12307160	.	+	0	Parent=Os03t0333100-01
Chr03	irgsp1_rep	three_prime_UTR	12307161	12307633	.	+	.	Parent=Os03t0333100-01
Chr03	irgsp1_rep	mRNA	12299714	12303581	.	+	.	ID=Os03t0333100-02;Name=Os03t0333100-02;Locus_id=Os03g0333100;Note=Hypothetical conserved gene.;Transcript_evidence=AK060242 (DDBJ%2C Best hit);ORF_evidence=B9F8A6 (UniProt);GO=Biological Process: ribosome biogenesis (GO:0042254),Cellular Component: nucleus (GO:0005634);InterPro=AARP2CN (IPR012948);NIAS_FLcDNA=001-003-F10;Expression=AK060242;TENOR=Os03t0333100-02;KEGG=Os03t0333100-02
Chr03	irgsp1_rep	five_prime_UTR	12299714	12299714	.	+	.	Parent=Os03t0333100-02
Chr03	irgsp1_rep	CDS	12299715	12299762	.	+	0	Parent=Os03t0333100-02
Chr03	irgsp1_rep	CDS	12300184	12300421	.	+	0	Parent=Os03t0333100-02
Chr03	irgsp1_rep	CDS	12301056	12301441	.	+	2	Parent=Os03t0333100-02
Chr03	irgsp1_rep	CDS	12302096	12302189	.	+	0	Parent=Os03t0333100-02
Chr03	irgsp1_rep	CDS	12302453	12302637	.	+	2	Parent=Os03t0333100-02
Chr03	irgsp1_rep	CDS	12303137	12303511	.	+	0	Parent=Os03t0333100-02
Chr03	irgsp1_rep	three_prime_UTR	12303512	12303581	.	+	.	Parent=Os03t0333100-02
Chr03	irgsp1_rep	mRNA	12308639	12311807	.	+	.	ID=Os03t0333200-01;Name=Os03t0333200-01;Locus_id=Os03g0333200;RAP-DB Gene Symbol Synonym(s)=DRUS1%2C OsCrRLK1L8%2C CrRLK1L8%2C FLR1;RAP-DB Gene Name Synonym(s)=DWARF AND RUNTISH SPIKELET1%2C Catharanthus roseus receptor-like kinase1-like kinase 8%2C FERONIA-Like Receptor kinase 1;CGSNL Gene Symbol=DRUS1;CGSNL Gene Name=DWARF AND RUNTISH SPIKELET1;Oryzabase Gene Symbol Synonym(s)=OsCrRLK1L8%2C CrRLK1L8%2C FLR1;Oryzabase Gene Name Synonym(s)=Catharanthus roseus receptor-like kinase1-like kinase 8%2C FERONIA-Like Receptor kinase 1%2C DWARF AND RUNTISH SPIKELET 1;Note=Receptor-like kinase%2C Control of reproductive growth and development%2C Repression of cell death;Transcript_evidence=AK099791;ORF_evidence=Q10LW0;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Malectin-like carbohydrate-binding domain (IPR024788),Concanavalin A-like lectin/glucanase domain (IPR013320),Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine-threonine/tyrosine-protein kinase catalytic domain (IPR001245),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J013097C16;Manual Curation=February 16%2C 2017;Literature_PMID=28082384;Oryzabase=18677;Expression=AK099791;TENOR=Os03t0333200-01;KEGG=Os03t0333200-01;Subcellular location=plasma membrane (GO:0005886)
Chr03	irgsp1_rep	five_prime_UTR	12308639	12308878	.	+	.	Parent=Os03t0333200-01
Chr03	irgsp1_rep	CDS	12308879	12311560	.	+	0	Parent=Os03t0333200-01
Chr03	irgsp1_rep	three_prime_UTR	12311561	12311807	.	+	.	Parent=Os03t0333200-01
Chr03	irgsp1_rep	mRNA	12315704	12320676	.	+	.	ID=Os03t0333300-01;Name=Os03t0333300-01;Locus_id=Os03g0333300;Note=Similar to Eukaryotic translation initiation factor 2 beta subunit (eIF-2-beta) (P38).;Transcript_evidence=AK073228 (DDBJ%2C Best hit);ORF_evidence=NP_001148481.1 (RefSeq);GO=Biological Process: translational initiation (GO:0006413),Molecular Function: translation initiation factor activity (GO:0003743);InterPro=Translation initiation factor IF2/IF5 (IPR002735),Translation initiation factor IF2/IF5%2C N-terminal (IPR016189),Translation initiation factor IF2/IF5%2C zinc-binding (IPR016190);NIAS_FLcDNA=J033023N08;Expression=AK073228;TENOR=Os03t0333300-01;KEGG=Os03t0333300-01
Chr03	irgsp1_rep	five_prime_UTR	12315704	12315848	.	+	.	Parent=Os03t0333300-01
Chr03	irgsp1_rep	five_prime_UTR	12315924	12315985	.	+	.	Parent=Os03t0333300-01
Chr03	irgsp1_rep	CDS	12315986	12316030	.	+	0	Parent=Os03t0333300-01
Chr03	irgsp1_rep	CDS	12316827	12316932	.	+	0	Parent=Os03t0333300-01
Chr03	irgsp1_rep	CDS	12317018	12317073	.	+	2	Parent=Os03t0333300-01
Chr03	irgsp1_rep	CDS	12317174	12317225	.	+	0	Parent=Os03t0333300-01
Chr03	irgsp1_rep	CDS	12317294	12317394	.	+	2	Parent=Os03t0333300-01
Chr03	irgsp1_rep	CDS	12318003	12318148	.	+	0	Parent=Os03t0333300-01
Chr03	irgsp1_rep	CDS	12318257	12318399	.	+	1	Parent=Os03t0333300-01
Chr03	irgsp1_rep	CDS	12318964	12319049	.	+	2	Parent=Os03t0333300-01
Chr03	irgsp1_rep	CDS	12320399	12320476	.	+	0	Parent=Os03t0333300-01
Chr03	irgsp1_rep	three_prime_UTR	12320477	12320676	.	+	.	Parent=Os03t0333300-01
Chr03	irgsp1_rep	mRNA	12315704	12316950	.	+	.	ID=Os03t0333300-02;Name=Os03t0333300-02;Locus_id=Os03g0333300;Note=Similar to eukaryotic translation initiation factor 2 beta subunit.;Transcript_evidence=AK072674 (DDBJ%2C Best hit);ORF_evidence=NP_001148481.1 (RefSeq);NIAS_FLcDNA=J023134J17;TENOR=Os03t0333300-02
Chr03	irgsp1_rep	five_prime_UTR	12315704	12315848	.	+	.	Parent=Os03t0333300-02
Chr03	irgsp1_rep	five_prime_UTR	12315924	12316826	.	+	.	Parent=Os03t0333300-02
Chr03	irgsp1_rep	CDS	12316827	12316950	.	+	0	Parent=Os03t0333300-02
Chr03	irgsp1_rep	mRNA	12315707	12317052	.	+	.	ID=Os03t0333300-03;Name=Os03t0333300-03;Locus_id=Os03g0333300;Note=Similar to eukaryotic translation initiation factor 2 beta subunit.;Transcript_evidence=AK063858 (DDBJ%2C Best hit);ORF_evidence=NP_001148481.1 (RefSeq);NIAS_FLcDNA=001-122-D07;Expression=AK063858;TENOR=Os03t0333300-03;KEGG=Os03t0333300-03
Chr03	irgsp1_rep	five_prime_UTR	12315707	12315848	.	+	.	Parent=Os03t0333300-03
Chr03	irgsp1_rep	five_prime_UTR	12315924	12315985	.	+	.	Parent=Os03t0333300-03
Chr03	irgsp1_rep	CDS	12315986	12316030	.	+	0	Parent=Os03t0333300-03
Chr03	irgsp1_rep	CDS	12316827	12316932	.	+	0	Parent=Os03t0333300-03
Chr03	irgsp1_rep	CDS	12317018	12317052	.	+	2	Parent=Os03t0333300-03
Chr03	irgsp1_rep	mRNA	12320931	12321796	.	+	.	ID=Os03t0333400-01;Name=Os03t0333400-01;Locus_id=Os03g0333400;CGSNL Gene Symbol=PSB27;Oryzabase Gene Symbol Synonym(s)=Psb27%2C OsPSB27;Oryzabase Gene Name Synonym(s)=photosystem II subunit Psb27;Note=Similar to photosystem II 11 kD protein.;Transcript_evidence=AK120545 (DDBJ%2C Best hit);ORF_evidence=NP_001148428.1 (RefSeq);NIAS_FLcDNA=J013129J23;Oryzabase=22688;Expression=AK120545;TENOR=Os03t0333400-01;KEGG=Os03t0333400-01
Chr03	irgsp1_rep	five_prime_UTR	12320931	12320997	.	+	.	Parent=Os03t0333400-01
Chr03	irgsp1_rep	CDS	12320998	12321495	.	+	0	Parent=Os03t0333400-01
Chr03	irgsp1_rep	three_prime_UTR	12321496	12321796	.	+	.	Parent=Os03t0333400-01
Chr03	irgsp1_rep	mRNA	12324376	12324492	.	-	.	ID=Os03t0333500-00;Name=Os03t0333500-00;Locus_id=Os03g0333500;Note=Similar to Serine/threonine-protein kinase AtPK19.;Transcript_evidence=AK372900 (DDBJ);ORF_evidence=B6SWM7 (UniProt);TENOR=Os03t0333500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	12324379	12324492	.	-	0	Parent=Os03t0333500-00
Chr03	irgsp1_rep	three_prime_UTR	12324376	12324378	.	-	.	Parent=Os03t0333500-00
Chr03	irgsp1_rep	mRNA	12324153	12324319	.	-	.	ID=Os03t0333601-00;Name=Os03t0333601-00;Locus_id=Os03g0333601;Note=Non-protein coding transcript.;Transcript_evidence=CT834433 (DDBJ%2C Secondary hit);ORF_evidence=NONE;TENOR=Os03t0333601-00
Chr03	irgsp1_rep	exon	12324153	12324319	.	-	.	Parent=Os03t0333601-00
Chr03	irgsp1_rep	mRNA	12327105	12329217	.	-	.	ID=Os03t0333700-01;Name=Os03t0333700-01;Locus_id=Os03g0333700;Note=Conserved hypothetical protein.;Transcript_evidence=AK071170 (DDBJ%2C Best hit);ORF_evidence=Q10LV4 (UniProt);NIAS_FLcDNA=J023080J08;TENOR=Os03t0333700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	12329151	12329217	.	-	0	Parent=Os03t0333700-01
Chr03	irgsp1_rep	CDS	12329007	12329076	.	-	2	Parent=Os03t0333700-01
Chr03	irgsp1_rep	CDS	12328805	12328925	.	-	1	Parent=Os03t0333700-01
Chr03	irgsp1_rep	CDS	12328064	12328312	.	-	0	Parent=Os03t0333700-01
Chr03	irgsp1_rep	three_prime_UTR	12327105	12328063	.	-	.	Parent=Os03t0333700-01
Chr03	irgsp1_rep	mRNA	12334545	12337463	.	-	.	ID=Os03t0333800-01;Name=Os03t0333800-01;Locus_id=Os03g0333800;Note=Protein of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK066413 (DDBJ%2C Best hit);ORF_evidence=B9F8A9 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=J013065M24;Expression=AK066413;TENOR=Os03t0333800-01;KEGG=Os03t0333800-01
Chr03	irgsp1_rep	five_prime_UTR	12337387	12337463	.	-	.	Parent=Os03t0333800-01
Chr03	irgsp1_rep	CDS	12336297	12337386	.	-	0	Parent=Os03t0333800-01
Chr03	irgsp1_rep	CDS	12335484	12335541	.	-	2	Parent=Os03t0333800-01
Chr03	irgsp1_rep	CDS	12335334	12335368	.	-	1	Parent=Os03t0333800-01
Chr03	irgsp1_rep	CDS	12335003	12335085	.	-	2	Parent=Os03t0333800-01
Chr03	irgsp1_rep	three_prime_UTR	12334545	12335002	.	-	.	Parent=Os03t0333800-01
Chr03	irgsp1_rep	mRNA	12340180	12344264	.	-	.	ID=Os03t0334000-02;Name=Os03t0334000-02;Locus_id=Os03g0334000;Note=Similar to Ribosomal protein S6 kinase.;Transcript_evidence=AK072649 (DDBJ%2C Best hit),AK242758 (DDBJ%2C Best hit),AK288923 (DDBJ%2C Best hit);ORF_evidence=B6SWM7 (UniProt);NIAS_FLcDNA=J023131A03,J090051H03,J090081P06;Expression=AK072649;TENOR=Os03t0334000-02;KEGG=Os03t0334000-02 (EC:2.7.11.1)
Chr03	irgsp1_rep	five_prime_UTR	12344185	12344264	.	-	.	Parent=Os03t0334000-02
Chr03	irgsp1_rep	five_prime_UTR	12342523	12342850	.	-	.	Parent=Os03t0334000-02
Chr03	irgsp1_rep	CDS	12341866	12342522	.	-	0	Parent=Os03t0334000-02
Chr03	irgsp1_rep	CDS	12341681	12341763	.	-	0	Parent=Os03t0334000-02
Chr03	irgsp1_rep	CDS	12341482	12341602	.	-	1	Parent=Os03t0334000-02
Chr03	irgsp1_rep	CDS	12341211	12341384	.	-	0	Parent=Os03t0334000-02
Chr03	irgsp1_rep	CDS	12340994	12341101	.	-	0	Parent=Os03t0334000-02
Chr03	irgsp1_rep	CDS	12340572	12340871	.	-	0	Parent=Os03t0334000-02
Chr03	irgsp1_rep	three_prime_UTR	12340180	12340571	.	-	.	Parent=Os03t0334000-02
Chr03	irgsp1_rep	mRNA	12340375	12342850	.	+	.	ID=Os03t0334050-00;Name=Os03t0334050-00;Locus_id=Os03g0334050;Note=Hypothetical protein.;Transcript_evidence=tplb0047b06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0334050-00
Chr03	irgsp1_rep	five_prime_UTR	12340375	12340483	.	+	.	Parent=Os03t0334050-00
Chr03	irgsp1_rep	five_prime_UTR	12340568	12340872	.	+	.	Parent=Os03t0334050-00
Chr03	irgsp1_rep	five_prime_UTR	12340995	12341101	.	+	.	Parent=Os03t0334050-00
Chr03	irgsp1_rep	five_prime_UTR	12341211	12341301	.	+	.	Parent=Os03t0334050-00
Chr03	irgsp1_rep	CDS	12341302	12341373	.	+	0	Parent=Os03t0334050-00
Chr03	irgsp1_rep	CDS	12341473	12341601	.	+	0	Parent=Os03t0334050-00
Chr03	irgsp1_rep	CDS	12341680	12341754	.	+	0	Parent=Os03t0334050-00
Chr03	irgsp1_rep	CDS	12341851	12342003	.	+	0	Parent=Os03t0334050-00
Chr03	irgsp1_rep	three_prime_UTR	12342004	12342850	.	+	.	Parent=Os03t0334050-00
Chr03	irgsp1_rep	mRNA	12347569	12353085	.	+	.	ID=Os03t0334100-01;Name=Os03t0334100-01;Locus_id=Os03g0334100;Note=PRC-barrel-like domain containing protein.;Transcript_evidence=AK120587 (DDBJ%2C Best hit);ORF_evidence=Q10LV0 (UniProt);InterPro=PRC-barrel-like (IPR011033);NIAS_FLcDNA=J013145A09;Expression=AK120587;TENOR=Os03t0334100-01;KEGG=Os03t0334100-01
Chr03	irgsp1_rep	five_prime_UTR	12347569	12347604	.	+	.	Parent=Os03t0334100-01
Chr03	irgsp1_rep	CDS	12347605	12348072	.	+	0	Parent=Os03t0334100-01
Chr03	irgsp1_rep	CDS	12351331	12351411	.	+	0	Parent=Os03t0334100-01
Chr03	irgsp1_rep	CDS	12351584	12351658	.	+	0	Parent=Os03t0334100-01
Chr03	irgsp1_rep	CDS	12351930	12351995	.	+	0	Parent=Os03t0334100-01
Chr03	irgsp1_rep	three_prime_UTR	12351996	12352176	.	+	.	Parent=Os03t0334100-01
Chr03	irgsp1_rep	three_prime_UTR	12352265	12352366	.	+	.	Parent=Os03t0334100-01
Chr03	irgsp1_rep	three_prime_UTR	12352478	12353085	.	+	.	Parent=Os03t0334100-01
Chr03	irgsp1_rep	mRNA	12354875	12358539	.	+	.	ID=Os03t0334200-01;Name=Os03t0334200-01;Locus_id=Os03g0334200;Note=Protein of unknown function DUF3133 domain containing protein.;Transcript_evidence=AK120329 (DDBJ%2C Best hit);ORF_evidence=B8ANZ5 (UniProt);InterPro=Protein of unknown function DUF3133 (IPR021480);NIAS_FLcDNA=J013058K09;TENOR=Os03t0334200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	12354875	12355095	.	+	.	Parent=Os03t0334200-01
Chr03	irgsp1_rep	CDS	12355096	12355139	.	+	0	Parent=Os03t0334200-01
Chr03	irgsp1_rep	CDS	12355989	12356227	.	+	1	Parent=Os03t0334200-01
Chr03	irgsp1_rep	CDS	12356331	12358147	.	+	2	Parent=Os03t0334200-01
Chr03	irgsp1_rep	three_prime_UTR	12358148	12358539	.	+	.	Parent=Os03t0334200-01
Chr03	irgsp1_rep	mRNA	12355217	12358463	.	+	.	ID=Os03t0334200-02;Name=Os03t0334200-02;Locus_id=Os03g0334200;Note=Protein of unknown function DUF3133 domain containing protein.;Transcript_evidence=AK066472 (DDBJ%2C Best hit);ORF_evidence=B8ANZ5 (UniProt);InterPro=Protein of unknown function DUF3133 (IPR021480);NIAS_FLcDNA=J013066N20;TENOR=Os03t0334200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	12355217	12355338	.	+	.	Parent=Os03t0334200-02
Chr03	irgsp1_rep	CDS	12355339	12355373	.	+	0	Parent=Os03t0334200-02
Chr03	irgsp1_rep	CDS	12355989	12356227	.	+	1	Parent=Os03t0334200-02
Chr03	irgsp1_rep	CDS	12356331	12358147	.	+	2	Parent=Os03t0334200-02
Chr03	irgsp1_rep	three_prime_UTR	12358148	12358463	.	+	.	Parent=Os03t0334200-02
Chr03	irgsp1_rep	mRNA	12356058	12358145	.	-	.	ID=Os03t0334250-00;Name=Os03t0334250-00;Locus_id=Os03g0334250;Note=Hypothetical protein.;Transcript_evidence=tplb0042f18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0334250-00
Chr03	irgsp1_rep	five_prime_UTR	12358121	12358145	.	-	.	Parent=Os03t0334250-00
Chr03	irgsp1_rep	CDS	12357266	12358120	.	-	0	Parent=Os03t0334250-00
Chr03	irgsp1_rep	three_prime_UTR	12357196	12357265	.	-	.	Parent=Os03t0334250-00
Chr03	irgsp1_rep	three_prime_UTR	12356058	12357137	.	-	.	Parent=Os03t0334250-00
Chr03	irgsp1_rep	mRNA	12359258	12360010	.	-	.	ID=Os03t0334300-00;Name=Os03t0334300-00;Locus_id=Os03g0334300;Note=Similar to predicted protein.;Transcript_evidence=EU941030 (DDBJ);ORF_evidence=Q10LU6 (UniProt);TENOR=Os03t0334300-00;KEGG=Os03t0334300-00
Chr03	irgsp1_rep	CDS	12359258	12360010	.	-	0	Parent=Os03t0334300-00
Chr03	irgsp1_rep	mRNA	12375718	12380262	.	+	.	ID=Os03t0334700-01;Name=Os03t0334700-01;Locus_id=Os03g0334700;CGSNL Gene Symbol=ALA1;CGSNL Gene Name=AMINOPHOSPHOLIPID ATPASE 1;Oryzabase Gene Symbol Synonym(s)=osALA1;Oryzabase Gene Name Synonym(s)=aminophospholipid P-Type ATPase 1;Note=Similar to Potential phospholipid-transporting ATPase VB (EC 3.6.3.1).;Transcript_evidence=AK063540 (DDBJ%2C Best hit);ORF_evidence=Q10LU3 (UniProt);GO=Biological Process: cation transport (GO:0006812),Biological Process: phospholipid transport (GO:0015914),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: phospholipid-translocating ATPase activity (GO:0004012),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C catalyzing transmembrane movement of substances (GO:0016820);InterPro=ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),ATPase%2C P-type%2C phospholipid-translocating%2C flippase (IPR006539),ATPase%2C P-type phosphorylation site (IPR018303),HAD-like domain (IPR023214),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C cation-transporting%2C domain N (IPR023306);NIAS_FLcDNA=001-117-C05;Oryzabase=13244;Expression=AK063540;TENOR=Os03t0334700-01;KEGG=Os03t0334700-01 (EC:3.6.3.1)
Chr03	irgsp1_rep	five_prime_UTR	12375718	12375718	.	+	.	Parent=Os03t0334700-01
Chr03	irgsp1_rep	CDS	12375719	12376082	.	+	0	Parent=Os03t0334700-01
Chr03	irgsp1_rep	CDS	12376355	12376685	.	+	2	Parent=Os03t0334700-01
Chr03	irgsp1_rep	CDS	12376824	12377679	.	+	1	Parent=Os03t0334700-01
Chr03	irgsp1_rep	CDS	12377872	12377995	.	+	0	Parent=Os03t0334700-01
Chr03	irgsp1_rep	CDS	12378581	12378800	.	+	2	Parent=Os03t0334700-01
Chr03	irgsp1_rep	CDS	12378883	12379341	.	+	1	Parent=Os03t0334700-01
Chr03	irgsp1_rep	CDS	12379430	12379631	.	+	1	Parent=Os03t0334700-01
Chr03	irgsp1_rep	three_prime_UTR	12379632	12379719	.	+	.	Parent=Os03t0334700-01
Chr03	irgsp1_rep	three_prime_UTR	12379895	12380262	.	+	.	Parent=Os03t0334700-01
Chr03	irgsp1_rep	mRNA	12380398	12385553	.	-	.	ID=Os03t0334800-01;Name=Os03t0334800-01;Locus_id=Os03g0334800;Note=Transmembrane receptor%2C eukaryota domain containing protein.;Transcript_evidence=AK101595 (DDBJ%2C Best hit);ORF_evidence=Q10LU1 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Transmembrane receptor%2C eukaryota (IPR009637);NIAS_FLcDNA=J033051F22;Expression=AK101595;TENOR=Os03t0334800-01;KEGG=Os03t0334800-01
Chr03	irgsp1_rep	five_prime_UTR	12385288	12385553	.	-	.	Parent=Os03t0334800-01
Chr03	irgsp1_rep	CDS	12385097	12385287	.	-	0	Parent=Os03t0334800-01
Chr03	irgsp1_rep	CDS	12383168	12384101	.	-	1	Parent=Os03t0334800-01
Chr03	irgsp1_rep	CDS	12382670	12382765	.	-	0	Parent=Os03t0334800-01
Chr03	irgsp1_rep	CDS	12382078	12382214	.	-	0	Parent=Os03t0334800-01
Chr03	irgsp1_rep	CDS	12381665	12381791	.	-	1	Parent=Os03t0334800-01
Chr03	irgsp1_rep	three_prime_UTR	12381619	12381664	.	-	.	Parent=Os03t0334800-01
Chr03	irgsp1_rep	three_prime_UTR	12380398	12380928	.	-	.	Parent=Os03t0334800-01
Chr03	irgsp1_rep	mRNA	12380554	12383801	.	-	.	ID=Os03t0334800-02;Name=Os03t0334800-02;Locus_id=Os03g0334800;Note=Similar to Lung seven transmembrane receptor family protein%2C expressed.;Transcript_evidence=AK103647 (DDBJ%2C Best hit);ORF_evidence=Q10LU1 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Transmembrane receptor%2C eukaryota (IPR009637);NIAS_FLcDNA=J033135B22;Expression=AK103647;TENOR=Os03t0334800-02;KEGG=Os03t0334800-02
Chr03	irgsp1_rep	five_prime_UTR	12383801	12383801	.	-	.	Parent=Os03t0334800-02
Chr03	irgsp1_rep	CDS	12383168	12383800	.	-	0	Parent=Os03t0334800-02
Chr03	irgsp1_rep	CDS	12382670	12382765	.	-	0	Parent=Os03t0334800-02
Chr03	irgsp1_rep	CDS	12382078	12382214	.	-	0	Parent=Os03t0334800-02
Chr03	irgsp1_rep	CDS	12381665	12381791	.	-	1	Parent=Os03t0334800-02
Chr03	irgsp1_rep	three_prime_UTR	12381619	12381664	.	-	.	Parent=Os03t0334800-02
Chr03	irgsp1_rep	three_prime_UTR	12380554	12380928	.	-	.	Parent=Os03t0334800-02
Chr03	irgsp1_rep	mRNA	12382075	12385261	.	+	.	ID=Os03t0334951-00;Name=Os03t0334951-00;Locus_id=Os03g0334951;Note=Hypothetical protein.;Transcript_evidence=tplb0043d02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0334951-00
Chr03	irgsp1_rep	five_prime_UTR	12382075	12382208	.	+	.	Parent=Os03t0334951-00
Chr03	irgsp1_rep	five_prime_UTR	12382663	12382772	.	+	.	Parent=Os03t0334951-00
Chr03	irgsp1_rep	five_prime_UTR	12383174	12383566	.	+	.	Parent=Os03t0334951-00
Chr03	irgsp1_rep	CDS	12383567	12384028	.	+	0	Parent=Os03t0334951-00
Chr03	irgsp1_rep	three_prime_UTR	12384029	12384094	.	+	.	Parent=Os03t0334951-00
Chr03	irgsp1_rep	three_prime_UTR	12385083	12385261	.	+	.	Parent=Os03t0334951-00
Chr03	irgsp1_rep	mRNA	12390064	12391618	.	+	.	ID=Os03t0335100-01;Name=Os03t0335100-01;Locus_id=Os03g0335100;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK107094 (DDBJ%2C Best hit);ORF_evidence=A3AHP0 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),DWNN domain (IPR014891);NIAS_FLcDNA=002-121-H05;TENOR=Os03t0335100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	12390064	12390313	.	+	.	Parent=Os03t0335100-01
Chr03	irgsp1_rep	CDS	12390314	12391465	.	+	0	Parent=Os03t0335100-01
Chr03	irgsp1_rep	three_prime_UTR	12391466	12391618	.	+	.	Parent=Os03t0335100-01
Chr03	irgsp1_rep	mRNA	12394575	12396889	.	+	.	ID=Os03t0335200-01;Name=Os03t0335200-01;Locus_id=Os03g0335200;CGSNL Gene Symbol=WRKY79;CGSNL Gene Name=WRKY GENE 79;Oryzabase Gene Symbol Synonym(s)=OsWRKY79%2C WRKY-79;Note=Similar to WRKY1 (WRKY transcription factor 17).;Transcript_evidence=AK105244 (DDBJ%2C Best hit);ORF_evidence=Q10LT9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);NIAS_FLcDNA=001-113-F08;Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=9210;Expression=AK105244;TENOR=Os03t0335200-01;KEGG=Os03t0335200-01
Chr03	irgsp1_rep	five_prime_UTR	12394575	12394667	.	+	.	Parent=Os03t0335200-01
Chr03	irgsp1_rep	CDS	12394668	12394904	.	+	0	Parent=Os03t0335200-01
Chr03	irgsp1_rep	CDS	12395607	12395704	.	+	0	Parent=Os03t0335200-01
Chr03	irgsp1_rep	CDS	12395843	12396455	.	+	1	Parent=Os03t0335200-01
Chr03	irgsp1_rep	three_prime_UTR	12396456	12396889	.	+	.	Parent=Os03t0335200-01
Chr03	irgsp1_rep	mRNA	12401939	12408443	.	+	.	ID=Os03t0335300-01;Name=Os03t0335300-01;Locus_id=Os03g0335300;Oryzabase Gene Name Synonym(s)=Vacuolar sorting receptor;Note=Similar to Vacuolar sorting receptor homolog (Fragment).;Transcript_evidence=AK111509 (DDBJ%2C Best hit),AK121413 (DDBJ%2C Best hit);ORF_evidence=Q9LLR3 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EGF-like calcium-binding (IPR001881),Protease-associated domain%2C PA (IPR003137),EGF-like calcium-binding%2C conserved site (IPR018097);NIAS_FLcDNA=J013001G14,J023133A05;Oryzabase=16016;Expression=AK111509;TENOR=Os03t0335300-01;KEGG=Os03t0335300-01
Chr03	irgsp1_rep	five_prime_UTR	12401939	12402233	.	+	.	Parent=Os03t0335300-01
Chr03	irgsp1_rep	CDS	12402234	12402534	.	+	0	Parent=Os03t0335300-01
Chr03	irgsp1_rep	CDS	12403930	12404616	.	+	2	Parent=Os03t0335300-01
Chr03	irgsp1_rep	CDS	12404753	12404841	.	+	2	Parent=Os03t0335300-01
Chr03	irgsp1_rep	CDS	12404946	12405015	.	+	0	Parent=Os03t0335300-01
Chr03	irgsp1_rep	CDS	12405089	12405172	.	+	2	Parent=Os03t0335300-01
Chr03	irgsp1_rep	CDS	12405275	12405351	.	+	2	Parent=Os03t0335300-01
Chr03	irgsp1_rep	CDS	12405449	12405530	.	+	0	Parent=Os03t0335300-01
Chr03	irgsp1_rep	CDS	12405717	12405799	.	+	2	Parent=Os03t0335300-01
Chr03	irgsp1_rep	CDS	12405881	12405947	.	+	0	Parent=Os03t0335300-01
Chr03	irgsp1_rep	CDS	12406399	12406530	.	+	2	Parent=Os03t0335300-01
Chr03	irgsp1_rep	CDS	12407743	12407849	.	+	2	Parent=Os03t0335300-01
Chr03	irgsp1_rep	CDS	12407974	12408081	.	+	0	Parent=Os03t0335300-01
Chr03	irgsp1_rep	three_prime_UTR	12408082	12408443	.	+	.	Parent=Os03t0335300-01
Chr03	irgsp1_rep	mRNA	12401975	12408443	.	+	.	ID=Os03t0335300-02;Name=Os03t0335300-02;Locus_id=Os03g0335300;Oryzabase Gene Name Synonym(s)=Vacuolar sorting receptor;Note=Similar to Vacuolar sorting receptor homolog (Fragment).;Transcript_evidence=AK098891 (DDBJ%2C Best hit),AK098846 (DDBJ%2C Best hit);ORF_evidence=Q9LLR3 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EGF-like calcium-binding (IPR001881),Protease-associated domain%2C PA (IPR003137),EGF-like calcium-binding%2C conserved site (IPR018097);NIAS_FLcDNA=J013001M02,J013000C17;Oryzabase=16016;Expression=AK098891;TENOR=Os03t0335300-02;KEGG=Os03t0335300-02
Chr03	irgsp1_rep	five_prime_UTR	12401975	12402233	.	+	.	Parent=Os03t0335300-02
Chr03	irgsp1_rep	CDS	12402234	12402534	.	+	0	Parent=Os03t0335300-02
Chr03	irgsp1_rep	CDS	12403930	12404616	.	+	2	Parent=Os03t0335300-02
Chr03	irgsp1_rep	CDS	12404753	12404841	.	+	2	Parent=Os03t0335300-02
Chr03	irgsp1_rep	CDS	12404946	12405015	.	+	0	Parent=Os03t0335300-02
Chr03	irgsp1_rep	CDS	12405089	12405172	.	+	2	Parent=Os03t0335300-02
Chr03	irgsp1_rep	CDS	12405275	12405351	.	+	2	Parent=Os03t0335300-02
Chr03	irgsp1_rep	CDS	12405449	12405530	.	+	0	Parent=Os03t0335300-02
Chr03	irgsp1_rep	CDS	12405717	12405799	.	+	2	Parent=Os03t0335300-02
Chr03	irgsp1_rep	CDS	12405881	12405947	.	+	0	Parent=Os03t0335300-02
Chr03	irgsp1_rep	CDS	12406399	12406530	.	+	2	Parent=Os03t0335300-02
Chr03	irgsp1_rep	CDS	12407743	12407849	.	+	2	Parent=Os03t0335300-02
Chr03	irgsp1_rep	CDS	12407974	12408081	.	+	0	Parent=Os03t0335300-02
Chr03	irgsp1_rep	three_prime_UTR	12408082	12408443	.	+	.	Parent=Os03t0335300-02
Chr03	irgsp1_rep	mRNA	12402031	12405515	.	+	.	ID=Os03t0335300-03;Name=Os03t0335300-03;Locus_id=Os03g0335300;Oryzabase Gene Name Synonym(s)=Vacuolar sorting receptor;Note=Similar to Vacuolar targeting receptor bp-80.;Transcript_evidence=AK111847 (DDBJ%2C Best hit);ORF_evidence=Q9LLR3 (UniProt);InterPro=Protease-associated domain%2C PA (IPR003137);NIAS_FLcDNA=J023146N11;Oryzabase=16016;TENOR=Os03t0335300-03
Chr03	irgsp1_rep	five_prime_UTR	12402031	12402233	.	+	.	Parent=Os03t0335300-03
Chr03	irgsp1_rep	CDS	12402234	12402534	.	+	0	Parent=Os03t0335300-03
Chr03	irgsp1_rep	CDS	12403930	12404616	.	+	2	Parent=Os03t0335300-03
Chr03	irgsp1_rep	CDS	12404753	12404841	.	+	2	Parent=Os03t0335300-03
Chr03	irgsp1_rep	CDS	12404946	12405015	.	+	0	Parent=Os03t0335300-03
Chr03	irgsp1_rep	CDS	12405089	12405172	.	+	2	Parent=Os03t0335300-03
Chr03	irgsp1_rep	CDS	12405275	12405351	.	+	2	Parent=Os03t0335300-03
Chr03	irgsp1_rep	CDS	12405449	12405515	.	+	0	Parent=Os03t0335300-03
Chr03	irgsp1_rep	mRNA	12406641	12407707	.	-	.	ID=Os03t0335401-01;Name=Os03t0335401-01;Locus_id=Os03g0335401;Note=Non-protein coding transcript.;Transcript_evidence=AK242968 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090091F06;TENOR=Os03t0335401-01
Chr03	irgsp1_rep	exon	12406641	12407707	.	-	.	Parent=Os03t0335401-01
Chr03	irgsp1_rep	mRNA	12411275	12415106	.	+	.	ID=Os03t0335500-01;Name=Os03t0335500-01;Locus_id=Os03g0335500;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK119808 (DDBJ%2C Best hit);ORF_evidence=Q84XU7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-176-H01;Expression=AK119808;TENOR=Os03t0335500-01;KEGG=Os03t0335500-01
Chr03	irgsp1_rep	five_prime_UTR	12411275	12411405	.	+	.	Parent=Os03t0335500-01
Chr03	irgsp1_rep	five_prime_UTR	12411565	12411773	.	+	.	Parent=Os03t0335500-01
Chr03	irgsp1_rep	CDS	12411774	12413230	.	+	0	Parent=Os03t0335500-01
Chr03	irgsp1_rep	CDS	12413361	12414819	.	+	1	Parent=Os03t0335500-01
Chr03	irgsp1_rep	three_prime_UTR	12414820	12415106	.	+	.	Parent=Os03t0335500-01
Chr03	irgsp1_rep	mRNA	12411298	12415106	.	+	.	ID=Os03t0335500-02;Name=Os03t0335500-02;Locus_id=Os03g0335500;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK099708 (DDBJ%2C Best hit);ORF_evidence=Q84XU7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013075N08;Expression=AK099708;TENOR=Os03t0335500-02;KEGG=Os03t0335500-02
Chr03	irgsp1_rep	five_prime_UTR	12411298	12411405	.	+	.	Parent=Os03t0335500-02
Chr03	irgsp1_rep	five_prime_UTR	12411565	12411773	.	+	.	Parent=Os03t0335500-02
Chr03	irgsp1_rep	CDS	12411774	12413230	.	+	0	Parent=Os03t0335500-02
Chr03	irgsp1_rep	CDS	12413361	12414819	.	+	1	Parent=Os03t0335500-02
Chr03	irgsp1_rep	three_prime_UTR	12414820	12415106	.	+	.	Parent=Os03t0335500-02
Chr03	irgsp1_rep	mRNA	12422482	12432698	.	-	.	ID=Os03t0335600-01;Name=Os03t0335600-01;Locus_id=Os03g0335600;Note=Similar to Valyl-tRNA synthetase.;Transcript_evidence=AK100513 (DDBJ%2C Best hit);ORF_evidence=Q7G2B1 (UniProt);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: valyl-tRNA aminoacylation (GO:0006438),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: valine-tRNA ligase activity (GO:0004832),Molecular Function: ATP binding (GO:0005524);InterPro=Aminoacyl-tRNA synthetase%2C class I%2C conserved site (IPR001412),Aminoacyl-tRNA synthetase%2C class Ia (IPR002300),Valyl-tRNA synthetase (IPR002303),Valyl/Leucyl/Isoleucyl-tRNA synthetase%2C class Ia%2C editing domain (IPR009008),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J023099P08;TENOR=Os03t0335600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	12432435	12432698	.	-	.	Parent=Os03t0335600-01
Chr03	irgsp1_rep	five_prime_UTR	12431476	12431649	.	-	.	Parent=Os03t0335600-01
Chr03	irgsp1_rep	five_prime_UTR	12431329	12431367	.	-	.	Parent=Os03t0335600-01
Chr03	irgsp1_rep	five_prime_UTR	12430744	12430791	.	-	.	Parent=Os03t0335600-01
Chr03	irgsp1_rep	five_prime_UTR	12430489	12430553	.	-	.	Parent=Os03t0335600-01
Chr03	irgsp1_rep	CDS	12430480	12430488	.	-	0	Parent=Os03t0335600-01
Chr03	irgsp1_rep	CDS	12430192	12430361	.	-	0	Parent=Os03t0335600-01
Chr03	irgsp1_rep	CDS	12430020	12430092	.	-	1	Parent=Os03t0335600-01
Chr03	irgsp1_rep	CDS	12429804	12429869	.	-	0	Parent=Os03t0335600-01
Chr03	irgsp1_rep	CDS	12429642	12429725	.	-	0	Parent=Os03t0335600-01
Chr03	irgsp1_rep	CDS	12429022	12429099	.	-	0	Parent=Os03t0335600-01
Chr03	irgsp1_rep	CDS	12427977	12428060	.	-	0	Parent=Os03t0335600-01
Chr03	irgsp1_rep	CDS	12427790	12427869	.	-	0	Parent=Os03t0335600-01
Chr03	irgsp1_rep	CDS	12427575	12427632	.	-	1	Parent=Os03t0335600-01
Chr03	irgsp1_rep	CDS	12427176	12427478	.	-	0	Parent=Os03t0335600-01
Chr03	irgsp1_rep	CDS	12426867	12427037	.	-	0	Parent=Os03t0335600-01
Chr03	irgsp1_rep	CDS	12426267	12426460	.	-	0	Parent=Os03t0335600-01
Chr03	irgsp1_rep	CDS	12425914	12426141	.	-	1	Parent=Os03t0335600-01
Chr03	irgsp1_rep	CDS	12425812	12425830	.	-	1	Parent=Os03t0335600-01
Chr03	irgsp1_rep	three_prime_UTR	12425739	12425811	.	-	.	Parent=Os03t0335600-01
Chr03	irgsp1_rep	three_prime_UTR	12424399	12424644	.	-	.	Parent=Os03t0335600-01
Chr03	irgsp1_rep	three_prime_UTR	12423831	12424331	.	-	.	Parent=Os03t0335600-01
Chr03	irgsp1_rep	three_prime_UTR	12423478	12423575	.	-	.	Parent=Os03t0335600-01
Chr03	irgsp1_rep	three_prime_UTR	12423261	12423360	.	-	.	Parent=Os03t0335600-01
Chr03	irgsp1_rep	three_prime_UTR	12422852	12422997	.	-	.	Parent=Os03t0335600-01
Chr03	irgsp1_rep	three_prime_UTR	12422482	12422748	.	-	.	Parent=Os03t0335600-01
Chr03	irgsp1_rep	mRNA	12444923	12447213	.	+	.	ID=Os03t0336000-01;Name=Os03t0336000-01;Locus_id=Os03g0336000;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK100067 (DDBJ%2C Best hit);ORF_evidence=A2XGF2 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013162P09;Expression=AK100067;TENOR=Os03t0336000-01;KEGG=Os03t0336000-01
Chr03	irgsp1_rep	five_prime_UTR	12444923	12445043	.	+	.	Parent=Os03t0336000-01
Chr03	irgsp1_rep	CDS	12445044	12446681	.	+	0	Parent=Os03t0336000-01
Chr03	irgsp1_rep	three_prime_UTR	12446682	12447213	.	+	.	Parent=Os03t0336000-01
Chr03	irgsp1_rep	mRNA	12447241	12449022	.	-	.	ID=Os03t0336100-01;Name=Os03t0336100-01;Locus_id=Os03g0336100;Oryzabase Gene Symbol Synonym(s)=CDP3.2;Oryzabase Gene Name Synonym(s)=cupin domain containing protein 3.2;Note=11-S plant seed storage protein family protein.;Transcript_evidence=AK105307 (DDBJ%2C Best hit);ORF_evidence=Q10LT1 (UniProt);GO=Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710);NIAS_FLcDNA=001-117-B06;Oryzabase=21703;Expression=AK105307;TENOR=Os03t0336100-01;KEGG=Os03t0336100-01
Chr03	irgsp1_rep	five_prime_UTR	12449020	12449022	.	-	.	Parent=Os03t0336100-01
Chr03	irgsp1_rep	CDS	12448858	12449019	.	-	0	Parent=Os03t0336100-01
Chr03	irgsp1_rep	CDS	12448748	12448775	.	-	0	Parent=Os03t0336100-01
Chr03	irgsp1_rep	CDS	12448041	12448375	.	-	2	Parent=Os03t0336100-01
Chr03	irgsp1_rep	CDS	12447440	12447928	.	-	0	Parent=Os03t0336100-01
Chr03	irgsp1_rep	three_prime_UTR	12447241	12447439	.	-	.	Parent=Os03t0336100-01
Chr03	irgsp1_rep	mRNA	12452080	12456210	.	+	.	ID=Os03t0336200-01;Name=Os03t0336200-01;Locus_id=Os03g0336200;RAP-DB Gene Symbol Synonym(s)=RF2B%2C RF2b%2C OsbZIP30;RAP-DB Gene Name Synonym(s)=bZIP TRANSCRIPTION FACTOR RF2B%2C Transcription factor RF2b%2C bZIP transcription factor 30;CGSNL Gene Symbol=RF2B;CGSNL Gene Name=bZIP TRANSCRIPTION FACTOR RF2B;Oryzabase Gene Symbol Synonym(s)=RF2b%2C OsbZIP30;Oryzabase Gene Name Synonym(s)=Transcription factor RF2b%2C bZIP transcription factor 30;Note=bZIP DNA-binding protein%2C Disease resistance%2C Vascular development;Transcript_evidence=AY466471 (Genbank),AK059473 (Genbank);ORF_evidence=Q6S4P4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper domain (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);NIAS_FLcDNA=001-028-E05;Manual Curation=May 29%2C 2009;Literature_PMID=14704272,19104064;Oryzabase=8246;Expression=AK059473;TENOR=Os03t0336200-01;KEGG=Os03t0336200-01
Chr03	irgsp1_rep	five_prime_UTR	12452080	12452253	.	+	.	Parent=Os03t0336200-01
Chr03	irgsp1_rep	CDS	12452254	12452666	.	+	0	Parent=Os03t0336200-01
Chr03	irgsp1_rep	CDS	12454325	12454457	.	+	1	Parent=Os03t0336200-01
Chr03	irgsp1_rep	CDS	12455001	12455085	.	+	0	Parent=Os03t0336200-01
Chr03	irgsp1_rep	CDS	12455441	12455799	.	+	2	Parent=Os03t0336200-01
Chr03	irgsp1_rep	three_prime_UTR	12455800	12456210	.	+	.	Parent=Os03t0336200-01
Chr03	irgsp1_rep	mRNA	12452164	12456329	.	+	.	ID=Os03t0336200-02;Name=Os03t0336200-02;Locus_id=Os03g0336200;CGSNL Gene Symbol=RF2B;CGSNL Gene Name=bZIP TRANSCRIPTION FACTOR RF2B;Oryzabase Gene Symbol Synonym(s)=RF2b%2C OsbZIP30;Oryzabase Gene Name Synonym(s)=Transcription factor RF2b%2C bZIP transcription factor 30;Note=Transcription factor RF2b.;Transcript_evidence=AK070466 (DDBJ%2C Best hit);ORF_evidence=Q6S4P4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);NIAS_FLcDNA=J023052D02;Oryzabase=8246;Expression=AK070466;TENOR=Os03t0336200-02;KEGG=Os03t0336200-02
Chr03	irgsp1_rep	five_prime_UTR	12452164	12452253	.	+	.	Parent=Os03t0336200-02
Chr03	irgsp1_rep	CDS	12452254	12452666	.	+	0	Parent=Os03t0336200-02
Chr03	irgsp1_rep	CDS	12454325	12454457	.	+	1	Parent=Os03t0336200-02
Chr03	irgsp1_rep	CDS	12455001	12455085	.	+	0	Parent=Os03t0336200-02
Chr03	irgsp1_rep	CDS	12455441	12455799	.	+	2	Parent=Os03t0336200-02
Chr03	irgsp1_rep	three_prime_UTR	12455800	12456329	.	+	.	Parent=Os03t0336200-02
Chr03	irgsp1_rep	mRNA	12458442	12469018	.	+	.	ID=Os03t0336300-01;Name=Os03t0336300-01;Locus_id=Os03g0336300;Note=Peptidase M16%2C core domain containing protein.;Transcript_evidence=AK068503 (DDBJ%2C Best hit);ORF_evidence=NP_172173.2 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: catalytic activity (GO:0003824),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: metal ion binding (GO:0046872);InterPro=Peptidase M16%2C zinc-binding site (IPR001431),Peptidase M16%2C C-terminal (IPR007863),Peptidase M16%2C core (IPR011237),Metalloenzyme%2C LuxS/M16 peptidase-like%2C metal-binding (IPR011249),Peptidase M16%2C N-terminal (IPR011765);NIAS_FLcDNA=J013153C08;Expression=AK068503;TENOR=Os03t0336300-01;KEGG=Os03t0336300-01
Chr03	irgsp1_rep	five_prime_UTR	12458442	12458539	.	+	.	Parent=Os03t0336300-01
Chr03	irgsp1_rep	CDS	12458540	12458896	.	+	0	Parent=Os03t0336300-01
Chr03	irgsp1_rep	CDS	12459338	12459413	.	+	0	Parent=Os03t0336300-01
Chr03	irgsp1_rep	CDS	12459579	12459625	.	+	2	Parent=Os03t0336300-01
Chr03	irgsp1_rep	CDS	12460626	12460738	.	+	0	Parent=Os03t0336300-01
Chr03	irgsp1_rep	CDS	12460832	12460905	.	+	1	Parent=Os03t0336300-01
Chr03	irgsp1_rep	CDS	12461034	12461129	.	+	2	Parent=Os03t0336300-01
Chr03	irgsp1_rep	CDS	12461216	12461335	.	+	2	Parent=Os03t0336300-01
Chr03	irgsp1_rep	CDS	12461436	12461669	.	+	2	Parent=Os03t0336300-01
Chr03	irgsp1_rep	CDS	12462262	12462410	.	+	2	Parent=Os03t0336300-01
Chr03	irgsp1_rep	CDS	12462921	12463077	.	+	0	Parent=Os03t0336300-01
Chr03	irgsp1_rep	CDS	12463163	12463318	.	+	2	Parent=Os03t0336300-01
Chr03	irgsp1_rep	CDS	12464135	12464511	.	+	2	Parent=Os03t0336300-01
Chr03	irgsp1_rep	CDS	12464647	12464796	.	+	0	Parent=Os03t0336300-01
Chr03	irgsp1_rep	CDS	12465847	12466029	.	+	0	Parent=Os03t0336300-01
Chr03	irgsp1_rep	CDS	12466216	12466419	.	+	0	Parent=Os03t0336300-01
Chr03	irgsp1_rep	CDS	12466645	12466751	.	+	0	Parent=Os03t0336300-01
Chr03	irgsp1_rep	CDS	12467029	12467182	.	+	1	Parent=Os03t0336300-01
Chr03	irgsp1_rep	CDS	12467572	12467693	.	+	0	Parent=Os03t0336300-01
Chr03	irgsp1_rep	CDS	12468317	12468563	.	+	1	Parent=Os03t0336300-01
Chr03	irgsp1_rep	three_prime_UTR	12468564	12469018	.	+	.	Parent=Os03t0336300-01
Chr03	irgsp1_rep	mRNA	12469445	12470602	.	-	.	ID=Os03t0336400-01;Name=Os03t0336400-01;Locus_id=Os03g0336400;CGSNL Gene Symbol=EXPA6;CGSNL Gene Name=ALPHA-EXPANSIN 6;Oryzabase Gene Symbol Synonym(s)=OsEXPA6%2C OsEXP6%2C osaEXPa1.24;Oryzabase Gene Name Synonym(s)=Rice expansin-6%2C Expansin-A6%2C Alpha-expansin-6%2C Expansin S1;Note=Similar to Alpha-expansin OsEXPA4.;Transcript_evidence=AK107698 (DDBJ%2C Best hit);ORF_evidence=Q9M4X7 (UniProt);GO=Biological Process: plant-type cell wall organization (GO:0009664),Cellular Component: extracellular region (GO:0005576);InterPro=Expansin (IPR002963),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);NIAS_FLcDNA=002-132-C08;Oryzabase=9368;Expression=AK107698;TENOR=Os03t0336400-01;KEGG=Os03t0336400-01
Chr03	irgsp1_rep	five_prime_UTR	12470587	12470602	.	-	.	Parent=Os03t0336400-01
Chr03	irgsp1_rep	CDS	12470451	12470586	.	-	0	Parent=Os03t0336400-01
Chr03	irgsp1_rep	CDS	12469693	12470336	.	-	2	Parent=Os03t0336400-01
Chr03	irgsp1_rep	three_prime_UTR	12469445	12469692	.	-	.	Parent=Os03t0336400-01
Chr03	irgsp1_rep	mRNA	12478017	12480135	.	+	.	ID=Os03t0336500-01;Name=Os03t0336500-01;Locus_id=Os03g0336500;Note=Similar to Protein LRP16.;Transcript_evidence=AK070095 (DDBJ%2C Best hit);ORF_evidence=B6SKT6 (UniProt);InterPro=Appr-1-p processing (IPR002589);NIAS_FLcDNA=J023042J09;TENOR=Os03t0336500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	12478017	12478247	.	+	0	Parent=Os03t0336500-01
Chr03	irgsp1_rep	CDS	12478824	12478872	.	+	0	Parent=Os03t0336500-01
Chr03	irgsp1_rep	CDS	12478957	12479059	.	+	2	Parent=Os03t0336500-01
Chr03	irgsp1_rep	CDS	12479162	12479257	.	+	1	Parent=Os03t0336500-01
Chr03	irgsp1_rep	CDS	12479356	12479430	.	+	1	Parent=Os03t0336500-01
Chr03	irgsp1_rep	CDS	12479530	12479599	.	+	1	Parent=Os03t0336500-01
Chr03	irgsp1_rep	CDS	12479804	12479887	.	+	0	Parent=Os03t0336500-01
Chr03	irgsp1_rep	three_prime_UTR	12479888	12480135	.	+	.	Parent=Os03t0336500-01
Chr03	irgsp1_rep	mRNA	12480829	12483098	.	-	.	ID=Os03t0336600-02;Name=Os03t0336600-02;Locus_id=Os03g0336600;Note=Reticulon family protein.;Transcript_evidence=AK061202 (DDBJ%2C Best hit),AK103014 (DDBJ%2C Best hit),AK104475 (DDBJ%2C Best hit);ORF_evidence=NP_001149392.1 (RefSeq);NIAS_FLcDNA=006-210-B03,J033116M03,006-301-E10;Expression=AK061202;TENOR=Os03t0336600-02;KEGG=Os03t0336600-02
Chr03	irgsp1_rep	five_prime_UTR	12482980	12483098	.	-	.	Parent=Os03t0336600-02
Chr03	irgsp1_rep	CDS	12482844	12482979	.	-	0	Parent=Os03t0336600-02
Chr03	irgsp1_rep	CDS	12481713	12481893	.	-	2	Parent=Os03t0336600-02
Chr03	irgsp1_rep	CDS	12481465	12481606	.	-	1	Parent=Os03t0336600-02
Chr03	irgsp1_rep	CDS	12481314	12481383	.	-	0	Parent=Os03t0336600-02
Chr03	irgsp1_rep	CDS	12481038	12481204	.	-	2	Parent=Os03t0336600-02
Chr03	irgsp1_rep	three_prime_UTR	12480829	12481037	.	-	.	Parent=Os03t0336600-02
Chr03	irgsp1_rep	mRNA	12492933	12500010	.	+	.	ID=Os03t0336700-01;Name=Os03t0336700-01;Locus_id=Os03g0336700;CGSNL Gene Symbol=NTP6;CGSNL Gene Name=NUCLEOTIDYL TRANSFERASE PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsNTP6;Oryzabase Gene Name Synonym(s)=nucleotidyl transferase protein 6;Note=PAP/25A core domain containing protein.;Transcript_evidence=AK120611 (DDBJ%2C Best hit);ORF_evidence=Q10LS4 (UniProt);GO=Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=PAP/25A-associated (IPR002058),Nucleotidyl transferase domain (IPR002934);NIAS_FLcDNA=J013151J09;Oryzabase=21889;Expression=AK120611;TENOR=Os03t0336700-01;KEGG=Os03t0336700-01
Chr03	irgsp1_rep	five_prime_UTR	12492933	12493049	.	+	.	Parent=Os03t0336700-01
Chr03	irgsp1_rep	CDS	12493050	12493274	.	+	0	Parent=Os03t0336700-01
Chr03	irgsp1_rep	CDS	12495270	12495455	.	+	0	Parent=Os03t0336700-01
Chr03	irgsp1_rep	CDS	12495705	12495797	.	+	0	Parent=Os03t0336700-01
Chr03	irgsp1_rep	CDS	12495988	12496170	.	+	0	Parent=Os03t0336700-01
Chr03	irgsp1_rep	CDS	12496282	12496384	.	+	0	Parent=Os03t0336700-01
Chr03	irgsp1_rep	CDS	12496471	12496641	.	+	2	Parent=Os03t0336700-01
Chr03	irgsp1_rep	CDS	12496862	12498030	.	+	2	Parent=Os03t0336700-01
Chr03	irgsp1_rep	CDS	12498261	12499171	.	+	0	Parent=Os03t0336700-01
Chr03	irgsp1_rep	CDS	12499654	12499720	.	+	1	Parent=Os03t0336700-01
Chr03	irgsp1_rep	three_prime_UTR	12499721	12500010	.	+	.	Parent=Os03t0336700-01
Chr03	irgsp1_rep	mRNA	12496969	12500010	.	+	.	ID=Os03t0336700-02;Name=Os03t0336700-02;Locus_id=Os03g0336700;CGSNL Gene Symbol=NTP6;CGSNL Gene Name=NUCLEOTIDYL TRANSFERASE PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsNTP6;Oryzabase Gene Name Synonym(s)=nucleotidyl transferase protein 6;Note=Hypothetical conserved gene.;Transcript_evidence=AK105633 (DDBJ%2C Best hit);ORF_evidence=Q10LS4 (UniProt);NIAS_FLcDNA=001-200-D08;Oryzabase=21889;Expression=AK105633;TENOR=Os03t0336700-02;KEGG=Os03t0336700-02
Chr03	irgsp1_rep	CDS	12496969	12498030	.	+	0	Parent=Os03t0336700-02
Chr03	irgsp1_rep	CDS	12498261	12499171	.	+	0	Parent=Os03t0336700-02
Chr03	irgsp1_rep	CDS	12499654	12499720	.	+	1	Parent=Os03t0336700-02
Chr03	irgsp1_rep	three_prime_UTR	12499721	12500010	.	+	.	Parent=Os03t0336700-02
Chr03	irgsp1_rep	mRNA	12509759	12510704	.	-	.	ID=Os03t0336900-00;Name=Os03t0336900-00;Locus_id=Os03g0336900;Oryzabase Gene Symbol Synonym(s)=OsOFP9%2C OsOFP13;Oryzabase Gene Name Synonym(s)=OVATE family protein 9%2C ovate family protein 13%2C OVATE-domain containing protein 13;Note=Similar to Uncharacterized plant-specific domain TIGR01568 family protein%2C expressed.;Transcript_evidence=EU972618 (DDBJ);ORF_evidence=NP_001050045.2 (RefSeq);InterPro=Domain of unknown function DUF623 (IPR006458);Oryzabase=18305;TENOR=Os03t0336900-00;KEGG=Os03t0336900-00
Chr03	irgsp1_rep	five_prime_UTR	12510665	12510704	.	-	.	Parent=Os03t0336900-00
Chr03	irgsp1_rep	CDS	12509759	12510664	.	-	0	Parent=Os03t0336900-00
Chr03	irgsp1_rep	mRNA	12515014	12515563	.	+	.	ID=Os03t0337000-01;Name=Os03t0337000-01;Locus_id=Os03g0337000;CGSNL Gene Symbol=THI28;CGSNL Gene Name=THIONIN 28;Oryzabase Gene Symbol Synonym(s)=OsTHI28%2C OsTHION28%2C THION28;Oryzabase Gene Name Synonym(s)=Thionin 28;Note=Conserved hypothetical protein.;Transcript_evidence=AK107981 (DDBJ%2C Best hit);ORF_evidence=A2XGG3 (UniProt);NIAS_FLcDNA=002-135-E06;Oryzabase=19268;Expression=AK107981;TENOR=Os03t0337000-01;KEGG=Os03t0337000-01
Chr03	irgsp1_rep	five_prime_UTR	12515014	12515070	.	+	.	Parent=Os03t0337000-01
Chr03	irgsp1_rep	CDS	12515071	12515334	.	+	0	Parent=Os03t0337000-01
Chr03	irgsp1_rep	three_prime_UTR	12515335	12515563	.	+	.	Parent=Os03t0337000-01
Chr03	irgsp1_rep	mRNA	12517636	12519973	.	-	.	ID=Os03t0337200-01;Name=Os03t0337200-01;Locus_id=Os03g0337200;Note=Hypothetical protein.;Transcript_evidence=AK065446 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013011E08;Expression=AK065446;TENOR=Os03t0337200-01;KEGG=Os03t0337200-01
Chr03	irgsp1_rep	five_prime_UTR	12518763	12519973	.	-	.	Parent=Os03t0337200-01
Chr03	irgsp1_rep	CDS	12518472	12518762	.	-	0	Parent=Os03t0337200-01
Chr03	irgsp1_rep	three_prime_UTR	12517636	12518471	.	-	.	Parent=Os03t0337200-01
Chr03	irgsp1_rep	mRNA	12516533	12519962	.	-	.	ID=Os03t0337200-02;Name=Os03t0337200-02;Locus_id=Os03g0337200;Note=Hypothetical protein.;Transcript_evidence=AK099883 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013111P14;TENOR=Os03t0337200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	12519961	12519962	.	-	.	Parent=Os03t0337200-02
Chr03	irgsp1_rep	CDS	12519736	12519960	.	-	0	Parent=Os03t0337200-02
Chr03	irgsp1_rep	three_prime_UTR	12519259	12519735	.	-	.	Parent=Os03t0337200-02
Chr03	irgsp1_rep	three_prime_UTR	12518722	12518881	.	-	.	Parent=Os03t0337200-02
Chr03	irgsp1_rep	three_prime_UTR	12517451	12518238	.	-	.	Parent=Os03t0337200-02
Chr03	irgsp1_rep	three_prime_UTR	12517043	12517232	.	-	.	Parent=Os03t0337200-02
Chr03	irgsp1_rep	three_prime_UTR	12516533	12516798	.	-	.	Parent=Os03t0337200-02
Chr03	irgsp1_rep	mRNA	12516587	12519882	.	-	.	ID=Os03t0337200-03;Name=Os03t0337200-03;Locus_id=Os03g0337200;Note=Non-protein coding transcript.;Transcript_evidence=AK122119 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J033128G07;TENOR=Os03t0337200-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	exon	12518728	12519882	.	-	.	Parent=Os03t0337200-03
Chr03	irgsp1_rep	exon	12518201	12518238	.	-	.	Parent=Os03t0337200-03
Chr03	irgsp1_rep	exon	12517451	12517848	.	-	.	Parent=Os03t0337200-03
Chr03	irgsp1_rep	exon	12517043	12517232	.	-	.	Parent=Os03t0337200-03
Chr03	irgsp1_rep	exon	12516587	12516798	.	-	.	Parent=Os03t0337200-03
Chr03	irgsp1_rep	mRNA	12520650	12528893	.	+	.	ID=Os03t0337500-00;Name=Os03t0337500-00;Locus_id=Os03g0337500;CGSNL Gene Symbol=HAK8;CGSNL Gene Name=HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 8;Oryzabase Gene Symbol Synonym(s)=OsHAK8;Oryzabase Gene Name Synonym(s)=High-affinity Potassium(K+) Transporter 8%2C Putative potassium transporter 8;Note=Similar to Potassium transporter.;Transcript_evidence=AK376576 (DDBJ);ORF_evidence=Q1T761 (UniProt);GO=Biological Process: potassium ion transmembrane transport (GO:0071805),Cellular Component: membrane (GO:0016020),Molecular Function: potassium ion transmembrane transporter activity (GO:0015079);InterPro=K+ potassium transporter (IPR003855);Oryzabase=8662;TENOR=Os03t0337500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	12520650	12520731	.	+	.	Parent=Os03t0337500-00
Chr03	irgsp1_rep	CDS	12520732	12520859	.	+	0	Parent=Os03t0337500-00
Chr03	irgsp1_rep	CDS	12524637	12524869	.	+	1	Parent=Os03t0337500-00
Chr03	irgsp1_rep	CDS	12524954	12525199	.	+	2	Parent=Os03t0337500-00
Chr03	irgsp1_rep	CDS	12525295	12525348	.	+	2	Parent=Os03t0337500-00
Chr03	irgsp1_rep	CDS	12526105	12526365	.	+	2	Parent=Os03t0337500-00
Chr03	irgsp1_rep	CDS	12526526	12526578	.	+	2	Parent=Os03t0337500-00
Chr03	irgsp1_rep	CDS	12526669	12526792	.	+	0	Parent=Os03t0337500-00
Chr03	irgsp1_rep	CDS	12526923	12527177	.	+	2	Parent=Os03t0337500-00
Chr03	irgsp1_rep	CDS	12527574	12528414	.	+	2	Parent=Os03t0337500-00
Chr03	irgsp1_rep	CDS	12528485	12528893	.	+	1	Parent=Os03t0337500-00
Chr03	irgsp1_rep	mRNA	12527570	12528661	.	-	.	ID=Os03t0337550-00;Name=Os03t0337550-00;Locus_id=Os03g0337550;Note=Hypothetical protein.;Transcript_evidence=EU968841 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0337550-00
Chr03	irgsp1_rep	CDS	12527570	12528661	.	-	0	Parent=Os03t0337550-00
Chr03	irgsp1_rep	mRNA	12529090	12532682	.	+	.	ID=Os03t0337600-01;Name=Os03t0337600-01;Locus_id=Os03g0337600;CGSNL Gene Symbol=LM3;CGSNL Gene Name=LESION MIMIC 3;Oryzabase Gene Symbol Synonym(s)=UroD%2C URO-D%2C OsLM3%2C OsUroD%2C OsURO-D;Oryzabase Gene Name Synonym(s)=Uroporphyrinogen-III decarboxylase%2C lesion mimic 3;Note=Similar to Uroporphyrinogen decarboxylase (EC 4.1.1.37) (URO-D) (UPD) (Fragment).;Transcript_evidence=AK070859 (DDBJ%2C Best hit);ORF_evidence=C5X0S2 (UniProt);GO=Biological Process: porphyrin-containing compound biosynthetic process (GO:0006779),Molecular Function: uroporphyrinogen decarboxylase activity (GO:0004853);InterPro=Uroporphyrinogen decarboxylase (URO-D) (IPR000257),Uroporphyrinogen decarboxylase HemE (IPR006361);NIAS_FLcDNA=J023065H03;Oryzabase=19971;Expression=AK070859;TENOR=Os03t0337600-01;KEGG=Os03t0337600-01 (EC:4.1.1.37)
Chr03	irgsp1_rep	five_prime_UTR	12529090	12529168	.	+	.	Parent=Os03t0337600-01
Chr03	irgsp1_rep	CDS	12529169	12529274	.	+	0	Parent=Os03t0337600-01
Chr03	irgsp1_rep	CDS	12529393	12529515	.	+	2	Parent=Os03t0337600-01
Chr03	irgsp1_rep	CDS	12530018	12530130	.	+	2	Parent=Os03t0337600-01
Chr03	irgsp1_rep	CDS	12530326	12530514	.	+	0	Parent=Os03t0337600-01
Chr03	irgsp1_rep	CDS	12531295	12531420	.	+	0	Parent=Os03t0337600-01
Chr03	irgsp1_rep	CDS	12531824	12532339	.	+	0	Parent=Os03t0337600-01
Chr03	irgsp1_rep	three_prime_UTR	12532340	12532682	.	+	.	Parent=Os03t0337600-01
Chr03	irgsp1_rep	mRNA	12533728	12540216	.	-	.	ID=Os03t0337700-01;Name=Os03t0337700-01;Locus_id=Os03g0337700;Note=Protein of unknown function%2C ATP binding family protein.;Transcript_evidence=AK065183 (DDBJ%2C Best hit);ORF_evidence=B4F8I8 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=Uncharacterised protein family%2C ATP binding (IPR004130);NIAS_FLcDNA=J013002D21;Expression=AK065183;TENOR=Os03t0337700-01;KEGG=Os03t0337700-01
Chr03	irgsp1_rep	five_prime_UTR	12540073	12540216	.	-	.	Parent=Os03t0337700-01
Chr03	irgsp1_rep	CDS	12540028	12540072	.	-	0	Parent=Os03t0337700-01
Chr03	irgsp1_rep	CDS	12539528	12539636	.	-	0	Parent=Os03t0337700-01
Chr03	irgsp1_rep	CDS	12539365	12539446	.	-	2	Parent=Os03t0337700-01
Chr03	irgsp1_rep	CDS	12538361	12538446	.	-	1	Parent=Os03t0337700-01
Chr03	irgsp1_rep	CDS	12537963	12538066	.	-	2	Parent=Os03t0337700-01
Chr03	irgsp1_rep	CDS	12537725	12537855	.	-	0	Parent=Os03t0337700-01
Chr03	irgsp1_rep	CDS	12537556	12537649	.	-	1	Parent=Os03t0337700-01
Chr03	irgsp1_rep	CDS	12534535	12534590	.	-	0	Parent=Os03t0337700-01
Chr03	irgsp1_rep	CDS	12533972	12534062	.	-	1	Parent=Os03t0337700-01
Chr03	irgsp1_rep	three_prime_UTR	12533728	12533971	.	-	.	Parent=Os03t0337700-01
Chr03	irgsp1_rep	mRNA	12542185	12544690	.	-	.	ID=Os03t0337800-01;Name=Os03t0337800-01;Locus_id=Os03g0337800;CGSNL Gene Symbol=RPL19;CGSNL Gene Name=RIBOSOMAL PROTEIN L19;Oryzabase Gene Symbol Synonym(s)=RPL19.3%2C OsRPL19.3%2C OsRPL19%2C RPL19e%2C OsRPL19e;Oryzabase Gene Name Synonym(s)=Ribosomal protein L19e%2C Ribosomal protein L19;Note=Similar to 60S ribosomal protein L19 (Fragment).;Transcript_evidence=AK059309 (DDBJ%2C Best hit),AK102721 (DDBJ%2C Best hit);ORF_evidence=A2XGG9 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L19/L19e (IPR000196),Ribosomal protein L19/L19e%2C domain 1 (IPR015972),Ribosomal protein L19/L19e%2C domain 3 (IPR015974),Ribosomal protein L19/L19e conserved site (IPR023638);NIAS_FLcDNA=001-025-G06,J033105G07;Oryzabase=17666;Expression=AK059309;TENOR=Os03t0337800-01;KEGG=Os03t0337800-01
Chr03	irgsp1_rep	five_prime_UTR	12544598	12544690	.	-	.	Parent=Os03t0337800-01
Chr03	irgsp1_rep	CDS	12544486	12544597	.	-	0	Parent=Os03t0337800-01
Chr03	irgsp1_rep	CDS	12543384	12543506	.	-	2	Parent=Os03t0337800-01
Chr03	irgsp1_rep	CDS	12542988	12543301	.	-	2	Parent=Os03t0337800-01
Chr03	irgsp1_rep	CDS	12542694	12542746	.	-	0	Parent=Os03t0337800-01
Chr03	irgsp1_rep	CDS	12542586	12542610	.	-	1	Parent=Os03t0337800-01
Chr03	irgsp1_rep	three_prime_UTR	12542185	12542585	.	-	.	Parent=Os03t0337800-01
Chr03	irgsp1_rep	mRNA	12542416	12543105	.	+	.	ID=Os03t0337850-00;Name=Os03t0337850-00;Locus_id=Os03g0337850;Note=Non-protein coding transcript.;Transcript_evidence=D29721 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os03t0337850-00
Chr03	irgsp1_rep	exon	12542416	12542610	.	+	.	Parent=Os03t0337850-00
Chr03	irgsp1_rep	exon	12542694	12542746	.	+	.	Parent=Os03t0337850-00
Chr03	irgsp1_rep	exon	12542988	12543105	.	+	.	Parent=Os03t0337850-00
Chr03	irgsp1_rep	mRNA	12546003	12552195	.	-	.	ID=Os03t0337900-01;Name=Os03t0337900-01;Locus_id=Os03g0337900;Note=Similar to predicted protein.;Transcript_evidence=AK243527 (DDBJ%2C Best hit);ORF_evidence=NP_001078075.1 (RefSeq);GO=Biological Process: tricarboxylic acid cycle (GO:0006099),Biological Process: fumarate metabolic process (GO:0006106),Cellular Component: tricarboxylic acid cycle enzyme complex (GO:0045239),Molecular Function: catalytic activity (GO:0003824),Molecular Function: fumarate hydratase activity (GO:0004333),Molecular Function: lyase activity (GO:0016829);InterPro=Fumarate lyase (IPR000362),Fumarate hydratase%2C class II (IPR005677),L-Aspartase-like (IPR008948),Fumarase C%2C C-terminal (IPR018951),Fumarate lyase%2C conserved site (IPR020557),Lyase 1%2C N-terminal (IPR022761),L-Aspartase-like%2C N-terminal (IPR024083);NIAS_FLcDNA=J100075P16;TENOR=Os03t0337900-01;KEGG=Os03t0337900-01 (EC:4.2.1.2)
Chr03	irgsp1_rep	five_prime_UTR	12552067	12552195	.	-	.	Parent=Os03t0337900-01
Chr03	irgsp1_rep	CDS	12551894	12552066	.	-	0	Parent=Os03t0337900-01
Chr03	irgsp1_rep	CDS	12551634	12551751	.	-	1	Parent=Os03t0337900-01
Chr03	irgsp1_rep	CDS	12551052	12551201	.	-	0	Parent=Os03t0337900-01
Chr03	irgsp1_rep	CDS	12550694	12550804	.	-	0	Parent=Os03t0337900-01
Chr03	irgsp1_rep	CDS	12550525	12550608	.	-	0	Parent=Os03t0337900-01
Chr03	irgsp1_rep	CDS	12549672	12549770	.	-	0	Parent=Os03t0337900-01
Chr03	irgsp1_rep	CDS	12549517	12549567	.	-	0	Parent=Os03t0337900-01
Chr03	irgsp1_rep	CDS	12549385	12549434	.	-	0	Parent=Os03t0337900-01
Chr03	irgsp1_rep	CDS	12548704	12548785	.	-	1	Parent=Os03t0337900-01
Chr03	irgsp1_rep	CDS	12548292	12548386	.	-	0	Parent=Os03t0337900-01
Chr03	irgsp1_rep	CDS	12548134	12548200	.	-	1	Parent=Os03t0337900-01
Chr03	irgsp1_rep	CDS	12547997	12548047	.	-	0	Parent=Os03t0337900-01
Chr03	irgsp1_rep	CDS	12547354	12547449	.	-	0	Parent=Os03t0337900-01
Chr03	irgsp1_rep	CDS	12547055	12547153	.	-	0	Parent=Os03t0337900-01
Chr03	irgsp1_rep	CDS	12546932	12546961	.	-	0	Parent=Os03t0337900-01
Chr03	irgsp1_rep	CDS	12546771	12546836	.	-	0	Parent=Os03t0337900-01
Chr03	irgsp1_rep	CDS	12546340	12546426	.	-	0	Parent=Os03t0337900-01
Chr03	irgsp1_rep	three_prime_UTR	12546003	12546339	.	-	.	Parent=Os03t0337900-01
Chr03	irgsp1_rep	mRNA	12556849	12559702	.	-	.	ID=Os03t0338000-01;Name=Os03t0338000-01;Locus_id=Os03g0338000;Note=Similar to alanine--glyoxylate aminotransferase 2.;Transcript_evidence=AK121399 (DDBJ%2C Best hit);ORF_evidence=NP_001182798.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: transaminase activity (GO:0008483),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferase class-III (IPR005814),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J023131M07;TENOR=Os03t0338000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	12559325	12559702	.	-	.	Parent=Os03t0338000-01
Chr03	irgsp1_rep	CDS	12559067	12559324	.	-	0	Parent=Os03t0338000-01
Chr03	irgsp1_rep	CDS	12558646	12558876	.	-	0	Parent=Os03t0338000-01
Chr03	irgsp1_rep	CDS	12558379	12558549	.	-	0	Parent=Os03t0338000-01
Chr03	irgsp1_rep	CDS	12557976	12558299	.	-	0	Parent=Os03t0338000-01
Chr03	irgsp1_rep	CDS	12557671	12557896	.	-	0	Parent=Os03t0338000-01
Chr03	irgsp1_rep	CDS	12557472	12557585	.	-	2	Parent=Os03t0338000-01
Chr03	irgsp1_rep	CDS	12557292	12557378	.	-	2	Parent=Os03t0338000-01
Chr03	irgsp1_rep	CDS	12557112	12557155	.	-	2	Parent=Os03t0338000-01
Chr03	irgsp1_rep	three_prime_UTR	12556849	12557111	.	-	.	Parent=Os03t0338000-01
Chr03	irgsp1_rep	mRNA	12557292	12559186	.	+	.	ID=Os03t0338100-00;Name=Os03t0338100-00;Locus_id=Os03g0338100;Note=Hypothetical protein.;Transcript_evidence=BT083955 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0338100-00
Chr03	irgsp1_rep	five_prime_UTR	12557292	12557292	.	+	.	Parent=Os03t0338100-00
Chr03	irgsp1_rep	CDS	12557293	12557375	.	+	0	Parent=Os03t0338100-00
Chr03	irgsp1_rep	CDS	12557469	12557585	.	+	1	Parent=Os03t0338100-00
Chr03	irgsp1_rep	CDS	12557671	12557884	.	+	1	Parent=Os03t0338100-00
Chr03	irgsp1_rep	CDS	12557961	12558263	.	+	0	Parent=Os03t0338100-00
Chr03	irgsp1_rep	CDS	12558337	12558357	.	+	0	Parent=Os03t0338100-00
Chr03	irgsp1_rep	three_prime_UTR	12558358	12558547	.	+	.	Parent=Os03t0338100-00
Chr03	irgsp1_rep	three_prime_UTR	12558644	12558870	.	+	.	Parent=Os03t0338100-00
Chr03	irgsp1_rep	three_prime_UTR	12559055	12559186	.	+	.	Parent=Os03t0338100-00
Chr03	irgsp1_rep	mRNA	12567959	12570803	.	+	.	ID=Os03t0338200-01;Name=Os03t0338200-01;Locus_id=Os03g0338200;Note=Conserved hypothetical protein.;Transcript_evidence=AK068547 (DDBJ%2C Best hit);ORF_evidence=B8AMN3 (UniProt);NIAS_FLcDNA=J013157I07;TENOR=Os03t0338200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	12567959	12568175	.	+	.	Parent=Os03t0338200-01
Chr03	irgsp1_rep	CDS	12568176	12568323	.	+	0	Parent=Os03t0338200-01
Chr03	irgsp1_rep	CDS	12568798	12569054	.	+	2	Parent=Os03t0338200-01
Chr03	irgsp1_rep	three_prime_UTR	12569055	12570803	.	+	.	Parent=Os03t0338200-01
Chr03	irgsp1_rep	mRNA	12587548	12589765	.	+	.	ID=Os03t0338400-01;Name=Os03t0338400-01;Locus_id=Os03g0338400;Oryzabase Gene Symbol Synonym(s)=OsbHLH166%2C bHLH166;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 166;Note=Basic helix-loop-helix dimerisation region bHLH domain containing protein.;Transcript_evidence=AK073378 (DDBJ%2C Best hit);ORF_evidence=B4FLH1 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J033029P04;Oryzabase=15436;Expression=AK073378;TENOR=Os03t0338400-01;KEGG=Os03t0338400-01
Chr03	irgsp1_rep	five_prime_UTR	12587548	12587826	.	+	.	Parent=Os03t0338400-01
Chr03	irgsp1_rep	CDS	12587827	12587910	.	+	0	Parent=Os03t0338400-01
Chr03	irgsp1_rep	CDS	12588281	12588397	.	+	0	Parent=Os03t0338400-01
Chr03	irgsp1_rep	CDS	12588871	12589041	.	+	0	Parent=Os03t0338400-01
Chr03	irgsp1_rep	CDS	12589275	12589394	.	+	0	Parent=Os03t0338400-01
Chr03	irgsp1_rep	three_prime_UTR	12589395	12589765	.	+	.	Parent=Os03t0338400-01
Chr03	irgsp1_rep	mRNA	12591671	12595636	.	-	.	ID=Os03t0338600-01;Name=Os03t0338600-01;Locus_id=Os03g0338600;Note=tRNA pseudouridine synthase family protein.;Transcript_evidence=AK066604 (DDBJ%2C Best hit);ORF_evidence=Q10LQ9 (UniProt);GO=Biological Process: pseudouridine synthesis (GO:0001522),Biological Process: RNA modification (GO:0009451),Molecular Function: RNA binding (GO:0003723),Molecular Function: pseudouridine synthase activity (GO:0009982);InterPro=Pseudouridine synthase I%2C TruA (IPR001406),Pseudouridine synthase I%2C TruA%2C N-terminal (IPR020094),Pseudouridine synthase I%2C TruA%2C C-terminal (IPR020095),Pseudouridine synthase I%2C TruA%2C alpha/beta domain (IPR020097),Pseudouridine synthase%2C catalytic domain (IPR020103);NIAS_FLcDNA=J013070E06;Expression=AK066604;TENOR=Os03t0338600-01;KEGG=Os03t0338600-01
Chr03	irgsp1_rep	five_prime_UTR	12595593	12595636	.	-	.	Parent=Os03t0338600-01
Chr03	irgsp1_rep	CDS	12595334	12595592	.	-	0	Parent=Os03t0338600-01
Chr03	irgsp1_rep	CDS	12595199	12595234	.	-	2	Parent=Os03t0338600-01
Chr03	irgsp1_rep	CDS	12594612	12594724	.	-	2	Parent=Os03t0338600-01
Chr03	irgsp1_rep	CDS	12594350	12594498	.	-	0	Parent=Os03t0338600-01
Chr03	irgsp1_rep	CDS	12594109	12594253	.	-	1	Parent=Os03t0338600-01
Chr03	irgsp1_rep	CDS	12592874	12593290	.	-	0	Parent=Os03t0338600-01
Chr03	irgsp1_rep	CDS	12592026	12592457	.	-	0	Parent=Os03t0338600-01
Chr03	irgsp1_rep	three_prime_UTR	12591671	12592025	.	-	.	Parent=Os03t0338600-01
Chr03	irgsp1_rep	mRNA	12591795	12595611	.	+	.	ID=Os03t0338700-00;Name=Os03t0338700-00;Locus_id=Os03g0338700;Note=Hypothetical protein.;Transcript_evidence=tplb0022i06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0338700-00
Chr03	irgsp1_rep	five_prime_UTR	12591795	12592462	.	+	.	Parent=Os03t0338700-00
Chr03	irgsp1_rep	five_prime_UTR	12592883	12593289	.	+	.	Parent=Os03t0338700-00
Chr03	irgsp1_rep	five_prime_UTR	12594108	12594252	.	+	.	Parent=Os03t0338700-00
Chr03	irgsp1_rep	five_prime_UTR	12594349	12594481	.	+	.	Parent=Os03t0338700-00
Chr03	irgsp1_rep	five_prime_UTR	12594592	12594678	.	+	.	Parent=Os03t0338700-00
Chr03	irgsp1_rep	CDS	12594679	12594741	.	+	0	Parent=Os03t0338700-00
Chr03	irgsp1_rep	CDS	12595313	12595501	.	+	0	Parent=Os03t0338700-00
Chr03	irgsp1_rep	three_prime_UTR	12595502	12595611	.	+	.	Parent=Os03t0338700-00
Chr03	irgsp1_rep	mRNA	12596018	12596655	.	+	.	ID=Os03t0338800-01;Name=Os03t0338800-01;Locus_id=Os03g0338800;Note=Hypothetical conserved gene.;Transcript_evidence=AK064660 (DDBJ%2C Best hit);ORF_evidence=B8B3T4 (UniProt);NIAS_FLcDNA=002-115-A06;Expression=AK064660;TENOR=Os03t0338800-01;KEGG=Os03t0338800-01
Chr03	irgsp1_rep	five_prime_UTR	12596018	12596433	.	+	.	Parent=Os03t0338800-01
Chr03	irgsp1_rep	CDS	12596434	12596655	.	+	0	Parent=Os03t0338800-01
Chr03	irgsp1_rep	mRNA	12599500	12605800	.	+	.	ID=Os03t0339100-01;Name=Os03t0339100-01;Locus_id=Os03g0339100;Oryzabase Gene Symbol Synonym(s)=OsWD40-70;Note=Similar to PRL1 protein.;Transcript_evidence=AK111641 (DDBJ%2C Best hit);ORF_evidence=B6TCU8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J013124B18;Oryzabase=10751;Expression=AK111641;TENOR=Os03t0339100-01;KEGG=Os03t0339100-01
Chr03	irgsp1_rep	five_prime_UTR	12599500	12599666	.	+	.	Parent=Os03t0339100-01
Chr03	irgsp1_rep	five_prime_UTR	12599813	12599827	.	+	.	Parent=Os03t0339100-01
Chr03	irgsp1_rep	CDS	12599828	12599949	.	+	0	Parent=Os03t0339100-01
Chr03	irgsp1_rep	CDS	12600061	12600085	.	+	1	Parent=Os03t0339100-01
Chr03	irgsp1_rep	CDS	12600189	12600288	.	+	0	Parent=Os03t0339100-01
Chr03	irgsp1_rep	CDS	12600502	12600583	.	+	2	Parent=Os03t0339100-01
Chr03	irgsp1_rep	CDS	12600673	12600729	.	+	1	Parent=Os03t0339100-01
Chr03	irgsp1_rep	CDS	12601408	12601489	.	+	1	Parent=Os03t0339100-01
Chr03	irgsp1_rep	CDS	12601568	12601660	.	+	0	Parent=Os03t0339100-01
Chr03	irgsp1_rep	CDS	12602760	12602823	.	+	0	Parent=Os03t0339100-01
Chr03	irgsp1_rep	CDS	12602937	12603022	.	+	2	Parent=Os03t0339100-01
Chr03	irgsp1_rep	CDS	12603105	12603206	.	+	0	Parent=Os03t0339100-01
Chr03	irgsp1_rep	CDS	12603302	12603385	.	+	0	Parent=Os03t0339100-01
Chr03	irgsp1_rep	CDS	12603661	12603721	.	+	0	Parent=Os03t0339100-01
Chr03	irgsp1_rep	CDS	12603801	12603867	.	+	2	Parent=Os03t0339100-01
Chr03	irgsp1_rep	CDS	12603949	12604026	.	+	1	Parent=Os03t0339100-01
Chr03	irgsp1_rep	CDS	12604643	12604707	.	+	1	Parent=Os03t0339100-01
Chr03	irgsp1_rep	CDS	12604884	12604961	.	+	2	Parent=Os03t0339100-01
Chr03	irgsp1_rep	CDS	12605054	12605226	.	+	2	Parent=Os03t0339100-01
Chr03	irgsp1_rep	three_prime_UTR	12605227	12605800	.	+	.	Parent=Os03t0339100-01
Chr03	irgsp1_rep	mRNA	12606289	12608757	.	+	.	ID=Os03t0339150-01;Name=Os03t0339150-01;Locus_id=Os03g0339150;Note=Hypothetical gene.;Transcript_evidence=AK241704 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065196J11;TENOR=Os03t0339150-01;KEGG=Os03t0339150-01
Chr03	irgsp1_rep	five_prime_UTR	12606289	12606295	.	+	.	Parent=Os03t0339150-01
Chr03	irgsp1_rep	CDS	12606296	12606551	.	+	0	Parent=Os03t0339150-01
Chr03	irgsp1_rep	CDS	12606954	12607033	.	+	2	Parent=Os03t0339150-01
Chr03	irgsp1_rep	three_prime_UTR	12607034	12608757	.	+	.	Parent=Os03t0339150-01
Chr03	irgsp1_rep	mRNA	12611816	12617137	.	+	.	ID=Os03t0339300-01;Name=Os03t0339300-01;Locus_id=Os03g0339300;Oryzabase Gene Symbol Synonym(s)=prx41%2C OsPrx41%2C OsPOX8.1%2C POX8.1%2C OsPOD2%2C POD2;Oryzabase Gene Name Synonym(s)=class III peroxidase 41%2C peroxidase 8.1%2C peroxidase 2;Note=Hypothetical conserved gene.;Transcript_evidence=AK061545 (DDBJ%2C Best hit);ORF_evidence=O22439 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=006-311-A04;Oryzabase=14567;Expression=AK061545;TENOR=Os03t0339300-01;KEGG=Os03t0339300-01
Chr03	irgsp1_rep	five_prime_UTR	12611816	12611906	.	+	.	Parent=Os03t0339300-01
Chr03	irgsp1_rep	CDS	12611907	12612122	.	+	0	Parent=Os03t0339300-01
Chr03	irgsp1_rep	CDS	12612581	12612772	.	+	0	Parent=Os03t0339300-01
Chr03	irgsp1_rep	CDS	12612961	12613036	.	+	0	Parent=Os03t0339300-01
Chr03	irgsp1_rep	CDS	12616682	12617010	.	+	2	Parent=Os03t0339300-01
Chr03	irgsp1_rep	three_prime_UTR	12617011	12617137	.	+	.	Parent=Os03t0339300-01
Chr03	irgsp1_rep	mRNA	12611816	12617140	.	+	.	ID=Os03t0339300-02;Name=Os03t0339300-02;Locus_id=Os03g0339300;Oryzabase Gene Symbol Synonym(s)=prx41%2C OsPrx41%2C OsPOX8.1%2C POX8.1%2C OsPOD2%2C POD2;Oryzabase Gene Name Synonym(s)=class III peroxidase 41%2C peroxidase 8.1%2C peroxidase 2;Note=Similar to Peroxidase (EC 1.11.1.7).;Transcript_evidence=AK104508 (DDBJ%2C Best hit),AK067107 (DDBJ%2C Best hit),AK104156 (DDBJ%2C Best hit),AK104395 (DDBJ%2C Best hit),AK104470 (DDBJ%2C Best hit),AK104487 (DDBJ%2C Best hit),AK104494 (DDBJ%2C Best hit),AK104573 (DDBJ%2C Best hit),AK104644 (DDBJ%2C Best hit),AK106109 (DDBJ%2C Best hit);ORF_evidence=Q5U1I4 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=006-302-G09,J013094O18,006-210-C01,006-202-C06,006-301-D07,006-302-B03,006-302-C02,006-306-H05,006-310-G05,001-207-D07;Oryzabase=14567;Expression=AK104508;TENOR=Os03t0339300-02;KEGG=Os03t0339300-02 (EC:1.11.1.7)
Chr03	irgsp1_rep	five_prime_UTR	12611816	12611906	.	+	.	Parent=Os03t0339300-02
Chr03	irgsp1_rep	CDS	12611907	12612122	.	+	0	Parent=Os03t0339300-02
Chr03	irgsp1_rep	CDS	12612581	12612772	.	+	0	Parent=Os03t0339300-02
Chr03	irgsp1_rep	CDS	12612961	12613126	.	+	0	Parent=Os03t0339300-02
Chr03	irgsp1_rep	CDS	12616536	12616924	.	+	2	Parent=Os03t0339300-02
Chr03	irgsp1_rep	three_prime_UTR	12616925	12617140	.	+	.	Parent=Os03t0339300-02
Chr03	irgsp1_rep	mRNA	12618079	12619711	.	-	.	ID=Os03t0339400-01;Name=Os03t0339400-01;Locus_id=Os03g0339400;Oryzabase Gene Symbol Synonym(s)=prx40;Oryzabase Gene Name Synonym(s)=class III peroxidase 40;Note=Haem peroxidase%2C plant/fungal/bacterial family protein.;Transcript_evidence=AK065305 (DDBJ%2C Best hit);ORF_evidence=Q5U1Q3 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J013002O02;Oryzabase=14566;Expression=AK065305;TENOR=Os03t0339400-01;KEGG=Os03t0339400-01 (EC:1.11.1.7)
Chr03	irgsp1_rep	five_prime_UTR	12619510	12619711	.	-	.	Parent=Os03t0339400-01
Chr03	irgsp1_rep	CDS	12619297	12619509	.	-	0	Parent=Os03t0339400-01
Chr03	irgsp1_rep	CDS	12619026	12619166	.	-	0	Parent=Os03t0339400-01
Chr03	irgsp1_rep	CDS	12618462	12618847	.	-	0	Parent=Os03t0339400-01
Chr03	irgsp1_rep	CDS	12618287	12618431	.	-	1	Parent=Os03t0339400-01
Chr03	irgsp1_rep	three_prime_UTR	12618079	12618286	.	-	.	Parent=Os03t0339400-01
Chr03	irgsp1_rep	mRNA	12627357	12630298	.	+	.	ID=Os03t0339700-01;Name=Os03t0339700-01;Locus_id=Os03g0339700;Note=Protein of unknown function DUF827%2C plant family protein.;Transcript_evidence=AK073084 (DDBJ%2C Best hit);ORF_evidence=A2XGI0 (UniProt);InterPro=Protein of unknown function DUF827%2C plant (IPR008545);NIAS_FLcDNA=J033022N12;Expression=AK073084;TENOR=Os03t0339700-01;KEGG=Os03t0339700-01
Chr03	irgsp1_rep	five_prime_UTR	12627357	12627391	.	+	.	Parent=Os03t0339700-01
Chr03	irgsp1_rep	CDS	12627392	12627565	.	+	0	Parent=Os03t0339700-01
Chr03	irgsp1_rep	CDS	12628566	12630026	.	+	0	Parent=Os03t0339700-01
Chr03	irgsp1_rep	three_prime_UTR	12630027	12630298	.	+	.	Parent=Os03t0339700-01
Chr03	irgsp1_rep	mRNA	12630705	12635182	.	-	.	ID=Os03t0339900-01;Name=Os03t0339900-01;Locus_id=Os03g0339900;CGSNL Gene Symbol=CIPK10;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 10;Oryzabase Gene Symbol Synonym(s)=OsCIPK10%2C CIPK10%2C OsCIPK10;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 10;Note=Similar to Serine/threonine protein kinase.;Transcript_evidence=AK066541 (DDBJ%2C Best hit),AK062464 (DDBJ%2C Best hit),AK066021 (DDBJ%2C Best hit),AK068987 (DDBJ%2C Best hit);ORF_evidence=Q10LQ2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Kinase-associated KA1 (IPR001772),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),NAF domain (IPR004041),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),NAF/FISL domain (IPR018451),Tyrosine-protein kinase%2C catalytic domain (IPR020635),Calcium/calmodulin-dependent/calcium-dependent protein kinase (IPR020636);NIAS_FLcDNA=J013070E20,001-103-D12,J013048O11,J013170O15;Oryzabase=7397;Expression=AK066541;TENOR=Os03t0339900-01;KEGG=Os03t0339900-01 (EC:2.7.11.11)
Chr03	irgsp1_rep	five_prime_UTR	12634996	12635182	.	-	.	Parent=Os03t0339900-01
Chr03	irgsp1_rep	five_prime_UTR	12633933	12634277	.	-	.	Parent=Os03t0339900-01
Chr03	irgsp1_rep	CDS	12632577	12633932	.	-	0	Parent=Os03t0339900-01
Chr03	irgsp1_rep	three_prime_UTR	12630705	12632576	.	-	.	Parent=Os03t0339900-01
Chr03	irgsp1_rep	mRNA	12643071	12646793	.	-	.	ID=Os03t0340001-01;Name=Os03t0340001-01;Locus_id=Os03g0340001;Note=Uroporphyrinogen decarboxylase (URO-D) domain containing protein.;Transcript_evidence=AK241455 (DDBJ%2C Best hit);ORF_evidence=Q10LQ1 (UniProt);GO=Biological Process: porphyrin-containing compound biosynthetic process (GO:0006779),Molecular Function: uroporphyrinogen decarboxylase activity (GO:0004853);InterPro=Uroporphyrinogen decarboxylase (URO-D) (IPR000257);NIAS_FLcDNA=J065163O04;TENOR=Os03t0340001-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	12646743	12646793	.	-	.	Parent=Os03t0340001-01
Chr03	irgsp1_rep	CDS	12646637	12646742	.	-	0	Parent=Os03t0340001-01
Chr03	irgsp1_rep	CDS	12646391	12646520	.	-	2	Parent=Os03t0340001-01
Chr03	irgsp1_rep	CDS	12645835	12645943	.	-	1	Parent=Os03t0340001-01
Chr03	irgsp1_rep	CDS	12645460	12645648	.	-	0	Parent=Os03t0340001-01
Chr03	irgsp1_rep	CDS	12644077	12644130	.	-	0	Parent=Os03t0340001-01
Chr03	irgsp1_rep	three_prime_UTR	12643071	12644076	.	-	.	Parent=Os03t0340001-01
Chr03	irgsp1_rep	mRNA	12652784	12653580	.	+	.	ID=Os03t0340100-00;Name=Os03t0340100-00;Locus_id=Os03g0340100;Note=Similar to Zinc finger%2C C3HC4 type family protein.;Transcript_evidence=CT835135 (DDBJ%2C Best hit);ORF_evidence=Q10LP9 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os03t0340100-00;KEGG=Os03t0340100-00
Chr03	irgsp1_rep	five_prime_UTR	12652784	12652848	.	+	.	Parent=Os03t0340100-00
Chr03	irgsp1_rep	CDS	12652849	12653451	.	+	0	Parent=Os03t0340100-00
Chr03	irgsp1_rep	three_prime_UTR	12653452	12653580	.	+	.	Parent=Os03t0340100-00
Chr03	irgsp1_rep	mRNA	12668813	12669664	.	-	.	ID=Os03t0340300-01;Name=Os03t0340300-01;Locus_id=Os03g0340300;Note=Hypothetical protein.;Transcript_evidence=AK110771 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-171-A12;Expression=AK110771;TENOR=Os03t0340300-01;KEGG=Os03t0340300-01
Chr03	irgsp1_rep	five_prime_UTR	12669580	12669664	.	-	.	Parent=Os03t0340300-01
Chr03	irgsp1_rep	CDS	12669013	12669579	.	-	0	Parent=Os03t0340300-01
Chr03	irgsp1_rep	three_prime_UTR	12668813	12669012	.	-	.	Parent=Os03t0340300-01
Chr03	irgsp1_rep	mRNA	12674467	12680655	.	-	.	ID=Os03t0340500-01;Name=Os03t0340500-01;Locus_id=Os03g0340500;CGSNL Gene Symbol=RSUS4;CGSNL Gene Name=SUCROSE SYNTHASE 4;Oryzabase Gene Symbol Synonym(s)=SUS4%2C SS4%2C OsScS4%2C RSs4%2C RSus4%2C OsSUS4;Oryzabase Gene Name Synonym(s)=Rice sucrose synthase-4%2C Sucrose synthase 4%2C Sucrose-UDP glucosyltransferase 4%2C Sucrose synthase-4%2C rice SuSy gene 4;Note=Similar to Sucrose synthase (EC 2.4.1.13).;Transcript_evidence=AK102158 (DDBJ%2C Best hit),AK099406 (DDBJ%2C Best hit);ORF_evidence=NP_001105194.1 (RefSeq);GO=Biological Process: sucrose metabolic process (GO:0005985),Biological Process: biosynthetic process (GO:0009058),Molecular Function: sucrose synthase activity (GO:0016157);InterPro=Sucrose synthase (IPR000368),Glycosyl transferase%2C family 1 (IPR001296),Sucrose synthase%2C plant/cyanobacteria (IPR012820);NIAS_FLcDNA=J033086F24,J013001M19;Oryzabase=14340;Expression=AK102158;TENOR=Os03t0340500-01;KEGG=Os03t0340500-01 (EC:2.4.1.13)
Chr03	irgsp1_rep	five_prime_UTR	12680605	12680655	.	-	.	Parent=Os03t0340500-01
Chr03	irgsp1_rep	CDS	12680507	12680604	.	-	0	Parent=Os03t0340500-01
Chr03	irgsp1_rep	CDS	12680261	12680387	.	-	1	Parent=Os03t0340500-01
Chr03	irgsp1_rep	CDS	12679988	12680139	.	-	0	Parent=Os03t0340500-01
Chr03	irgsp1_rep	CDS	12679254	12679446	.	-	1	Parent=Os03t0340500-01
Chr03	irgsp1_rep	CDS	12679043	12679161	.	-	0	Parent=Os03t0340500-01
Chr03	irgsp1_rep	CDS	12678400	12678616	.	-	1	Parent=Os03t0340500-01
Chr03	irgsp1_rep	CDS	12678148	12678243	.	-	0	Parent=Os03t0340500-01
Chr03	irgsp1_rep	CDS	12677765	12677938	.	-	0	Parent=Os03t0340500-01
Chr03	irgsp1_rep	CDS	12677204	12677320	.	-	0	Parent=Os03t0340500-01
Chr03	irgsp1_rep	CDS	12676961	12677127	.	-	0	Parent=Os03t0340500-01
Chr03	irgsp1_rep	CDS	12676557	12676781	.	-	1	Parent=Os03t0340500-01
Chr03	irgsp1_rep	CDS	12675960	12676281	.	-	1	Parent=Os03t0340500-01
Chr03	irgsp1_rep	CDS	12675622	12675866	.	-	0	Parent=Os03t0340500-01
Chr03	irgsp1_rep	CDS	12675388	12675526	.	-	1	Parent=Os03t0340500-01
Chr03	irgsp1_rep	CDS	12674748	12674786	.	-	0	Parent=Os03t0340500-01
Chr03	irgsp1_rep	three_prime_UTR	12674467	12674747	.	-	.	Parent=Os03t0340500-01
Chr03	irgsp1_rep	mRNA	12674505	12676650	.	-	.	ID=Os03t0340500-03;Name=Os03t0340500-03;Locus_id=Os03g0340500;CGSNL Gene Symbol=RSUS4;CGSNL Gene Name=SUCROSE SYNTHASE 4;Oryzabase Gene Symbol Synonym(s)=SUS4%2C SS4%2C OsScS4%2C RSs4%2C RSus4%2C OsSUS4;Oryzabase Gene Name Synonym(s)=Rice sucrose synthase-4%2C Sucrose synthase 4%2C Sucrose-UDP glucosyltransferase 4%2C Sucrose synthase-4%2C rice SuSy gene 4;Note=Similar to sucrose synthase2.;Transcript_evidence=AK060797 (DDBJ%2C Best hit);ORF_evidence=NP_001105194.1 (RefSeq);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: sucrose synthase activity (GO:0016157);InterPro=Glycosyl transferase%2C family 1 (IPR001296),Sucrose synthase%2C plant/cyanobacteria (IPR012820);NIAS_FLcDNA=001-033-F01;Oryzabase=14340;Expression=AK060797;TENOR=Os03t0340500-03;KEGG=Os03t0340500-03 (EC:2.4.1.13)
Chr03	irgsp1_rep	five_prime_UTR	12676649	12676650	.	-	.	Parent=Os03t0340500-03
Chr03	irgsp1_rep	CDS	12676557	12676648	.	-	0	Parent=Os03t0340500-03
Chr03	irgsp1_rep	CDS	12675960	12676281	.	-	1	Parent=Os03t0340500-03
Chr03	irgsp1_rep	CDS	12675622	12675866	.	-	0	Parent=Os03t0340500-03
Chr03	irgsp1_rep	CDS	12675388	12675526	.	-	1	Parent=Os03t0340500-03
Chr03	irgsp1_rep	CDS	12674748	12674786	.	-	0	Parent=Os03t0340500-03
Chr03	irgsp1_rep	three_prime_UTR	12674505	12674747	.	-	.	Parent=Os03t0340500-03
Chr03	irgsp1_rep	mRNA	12675387	12680142	.	+	.	ID=Os03t0340601-00;Name=Os03t0340601-00;Locus_id=Os03g0340601;Note=Hypothetical protein.;Transcript_evidence=tplb0054p19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0340601-00
Chr03	irgsp1_rep	five_prime_UTR	12675387	12675520	.	+	.	Parent=Os03t0340601-00
Chr03	irgsp1_rep	five_prime_UTR	12675615	12675847	.	+	.	Parent=Os03t0340601-00
Chr03	irgsp1_rep	CDS	12675848	12675875	.	+	0	Parent=Os03t0340601-00
Chr03	irgsp1_rep	CDS	12675970	12676262	.	+	2	Parent=Os03t0340601-00
Chr03	irgsp1_rep	three_prime_UTR	12676263	12676265	.	+	.	Parent=Os03t0340601-00
Chr03	irgsp1_rep	three_prime_UTR	12676546	12676774	.	+	.	Parent=Os03t0340601-00
Chr03	irgsp1_rep	three_prime_UTR	12676953	12677085	.	+	.	Parent=Os03t0340601-00
Chr03	irgsp1_rep	three_prime_UTR	12677166	12677292	.	+	.	Parent=Os03t0340601-00
Chr03	irgsp1_rep	three_prime_UTR	12677730	12677922	.	+	.	Parent=Os03t0340601-00
Chr03	irgsp1_rep	three_prime_UTR	12678129	12678243	.	+	.	Parent=Os03t0340601-00
Chr03	irgsp1_rep	three_prime_UTR	12678400	12678629	.	+	.	Parent=Os03t0340601-00
Chr03	irgsp1_rep	three_prime_UTR	12679061	12679143	.	+	.	Parent=Os03t0340601-00
Chr03	irgsp1_rep	three_prime_UTR	12679241	12679426	.	+	.	Parent=Os03t0340601-00
Chr03	irgsp1_rep	three_prime_UTR	12679967	12680142	.	+	.	Parent=Os03t0340601-00
Chr03	irgsp1_rep	mRNA	12689638	12691559	.	+	.	ID=Os03t0340700-01;Name=Os03t0340700-01;Locus_id=Os03g0340700;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK100470 (DDBJ%2C Best hit);ORF_evidence=NP_001149491.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide TPR-1 (IPR001440),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J023093E24;Expression=AK100470;TENOR=Os03t0340700-01;KEGG=Os03t0340700-01
Chr03	irgsp1_rep	five_prime_UTR	12689638	12689783	.	+	.	Parent=Os03t0340700-01
Chr03	irgsp1_rep	CDS	12689784	12691088	.	+	0	Parent=Os03t0340700-01
Chr03	irgsp1_rep	CDS	12691179	12691352	.	+	0	Parent=Os03t0340700-01
Chr03	irgsp1_rep	three_prime_UTR	12691353	12691559	.	+	.	Parent=Os03t0340700-01
Chr03	irgsp1_rep	mRNA	12695305	12706384	.	+	.	ID=Os03t0340900-01;Name=Os03t0340900-01;Locus_id=Os03g0340900;Note=Similar to RSH1.;Transcript_evidence=AK066679 (DDBJ%2C Best hit);ORF_evidence=Q84LE7 (UniProt);GO=Biological Process: guanosine tetraphosphate metabolic process (GO:0015969),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphoric diester hydrolase activity (GO:0008081),Molecular Function: metal ion binding (GO:0046872);InterPro=Metal-dependent phosphohydrolase%2C HD domain (IPR003607),TGS (IPR004095),RelA/SpoT protein (IPR004811),Metal-dependent phosphohydrolase%2C HD subdomain (IPR006674),RelA/SpoT (IPR007685),Beta-grasp fold%2C ferredoxin-type (IPR012675),TGS-like (IPR012676);NIAS_FLcDNA=J013072F16;Expression=AK066679;TENOR=Os03t0340900-01;KEGG=Os03t0340900-01
Chr03	irgsp1_rep	five_prime_UTR	12695305	12695525	.	+	.	Parent=Os03t0340900-01
Chr03	irgsp1_rep	CDS	12695526	12695553	.	+	0	Parent=Os03t0340900-01
Chr03	irgsp1_rep	CDS	12695741	12695961	.	+	2	Parent=Os03t0340900-01
Chr03	irgsp1_rep	CDS	12698240	12698425	.	+	0	Parent=Os03t0340900-01
Chr03	irgsp1_rep	CDS	12698923	12698988	.	+	0	Parent=Os03t0340900-01
Chr03	irgsp1_rep	CDS	12699111	12699203	.	+	0	Parent=Os03t0340900-01
Chr03	irgsp1_rep	CDS	12699304	12699435	.	+	0	Parent=Os03t0340900-01
Chr03	irgsp1_rep	CDS	12699570	12699671	.	+	0	Parent=Os03t0340900-01
Chr03	irgsp1_rep	CDS	12699769	12699846	.	+	0	Parent=Os03t0340900-01
Chr03	irgsp1_rep	CDS	12699924	12699995	.	+	0	Parent=Os03t0340900-01
Chr03	irgsp1_rep	CDS	12700961	12701068	.	+	0	Parent=Os03t0340900-01
Chr03	irgsp1_rep	CDS	12701144	12701241	.	+	0	Parent=Os03t0340900-01
Chr03	irgsp1_rep	CDS	12701680	12701740	.	+	1	Parent=Os03t0340900-01
Chr03	irgsp1_rep	CDS	12701834	12701896	.	+	0	Parent=Os03t0340900-01
Chr03	irgsp1_rep	CDS	12702004	12702060	.	+	0	Parent=Os03t0340900-01
Chr03	irgsp1_rep	CDS	12702138	12702239	.	+	0	Parent=Os03t0340900-01
Chr03	irgsp1_rep	CDS	12702347	12702505	.	+	0	Parent=Os03t0340900-01
Chr03	irgsp1_rep	CDS	12703086	12703217	.	+	0	Parent=Os03t0340900-01
Chr03	irgsp1_rep	CDS	12703292	12703378	.	+	0	Parent=Os03t0340900-01
Chr03	irgsp1_rep	CDS	12703443	12703514	.	+	0	Parent=Os03t0340900-01
Chr03	irgsp1_rep	CDS	12704675	12704761	.	+	0	Parent=Os03t0340900-01
Chr03	irgsp1_rep	CDS	12704828	12705278	.	+	0	Parent=Os03t0340900-01
Chr03	irgsp1_rep	CDS	12705503	12705564	.	+	2	Parent=Os03t0340900-01
Chr03	irgsp1_rep	CDS	12705722	12705790	.	+	0	Parent=Os03t0340900-01
Chr03	irgsp1_rep	CDS	12705872	12705964	.	+	0	Parent=Os03t0340900-01
Chr03	irgsp1_rep	three_prime_UTR	12705965	12706384	.	+	.	Parent=Os03t0340900-01
Chr03	irgsp1_rep	mRNA	12713329	12714583	.	+	.	ID=Os03t0341000-01;Name=Os03t0341000-01;Locus_id=Os03g0341000;RAP-DB Gene Symbol Synonym(s)=ERF66%2C OsERF66;RAP-DB Gene Name Synonym(s)=ethylene response factor 66;CGSNL Gene Symbol=ERF66;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 66;Oryzabase Gene Symbol Synonym(s)=OsERF#066%2C OsERF066%2C OsERF66%2C AP2/EREBP#030%2C AP2/EREBP30;Oryzabase Gene Name Synonym(s)=ethylene response factor 66%2C APETALA2/ethylene-responsive element binding protein 30;Note=Group VII ethylene response factor%2C Submergence tolerance;Transcript_evidence=AK111414;ORF_evidence=Q10LN8;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-binding transcription factor activity (GO:0003700);InterPro=DNA-binding domain superfamily (IPR016177),AP2/ERF domain superfamily (IPR036955),AP2/ERF domain (IPR001471);NIAS_FLcDNA=002-182-G01;Manual Curation=June 9%2C 2020;Literature_PMID=30723146;Oryzabase=10579;Expression=AK111414;TENOR=Os03t0341000-01;KEGG=Os03t0341000-01
Chr03	irgsp1_rep	five_prime_UTR	12713329	12713470	.	+	.	Parent=Os03t0341000-01
Chr03	irgsp1_rep	CDS	12713471	12713594	.	+	0	Parent=Os03t0341000-01
Chr03	irgsp1_rep	CDS	12713686	12714293	.	+	2	Parent=Os03t0341000-01
Chr03	irgsp1_rep	three_prime_UTR	12714294	12714583	.	+	.	Parent=Os03t0341000-01
Chr03	irgsp1_rep	mRNA	12715987	12718369	.	-	.	ID=Os03t0341100-01;Name=Os03t0341100-01;Locus_id=Os03g0341100;Oryzabase Gene Name Synonym(s)=Ribosomal protein L18;Note=Similar to 60S ribosomal protein L18.;Transcript_evidence=AK121580 (DDBJ%2C Best hit);ORF_evidence=B8APD9 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L18e (IPR000039),Ribosomal protein L18e/L15P (IPR021131),Ribosomal protein L18e%2C conserved site (IPR021132);NIAS_FLcDNA=J033037B18;Oryzabase=17663;Expression=AK121580;TENOR=Os03t0341100-01;KEGG=Os03t0341100-01
Chr03	irgsp1_rep	five_prime_UTR	12718327	12718369	.	-	.	Parent=Os03t0341100-01
Chr03	irgsp1_rep	CDS	12718324	12718326	.	-	0	Parent=Os03t0341100-01
Chr03	irgsp1_rep	CDS	12718151	12718240	.	-	0	Parent=Os03t0341100-01
Chr03	irgsp1_rep	CDS	12717936	12718064	.	-	0	Parent=Os03t0341100-01
Chr03	irgsp1_rep	CDS	12717661	12717843	.	-	0	Parent=Os03t0341100-01
Chr03	irgsp1_rep	CDS	12716149	12716307	.	-	0	Parent=Os03t0341100-01
Chr03	irgsp1_rep	three_prime_UTR	12715987	12716148	.	-	.	Parent=Os03t0341100-01
Chr03	irgsp1_rep	mRNA	12716070	12718241	.	+	.	ID=Os03t0341150-00;Name=Os03t0341150-00;Locus_id=Os03g0341150;Note=Non-protein coding transcript.;Transcript_evidence=BT019314 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0341150-00
Chr03	irgsp1_rep	exon	12716070	12716325	.	+	.	Parent=Os03t0341150-00
Chr03	irgsp1_rep	exon	12717676	12717837	.	+	.	Parent=Os03t0341150-00
Chr03	irgsp1_rep	exon	12717934	12718058	.	+	.	Parent=Os03t0341150-00
Chr03	irgsp1_rep	exon	12718142	12718241	.	+	.	Parent=Os03t0341150-00
Chr03	irgsp1_rep	mRNA	12719110	12719678	.	-	.	ID=Os03t0341200-00;Name=Os03t0341200-00;Locus_id=Os03g0341200;Note=Conserved hypothetical protein.;Transcript_evidence=EU951491 (DDBJ);ORF_evidence=NP_001050070.2 (RefSeq);TENOR=Os03t0341200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	12719181	12719678	.	-	0	Parent=Os03t0341200-00
Chr03	irgsp1_rep	three_prime_UTR	12719110	12719180	.	-	.	Parent=Os03t0341200-00
Chr03	irgsp1_rep	mRNA	12729779	12731404	.	+	.	ID=Os03t0341300-01;Name=Os03t0341300-01;Locus_id=Os03g0341300;CGSNL Gene Symbol=SWEET16;CGSNL Gene Name=SWEET16;Oryzabase Gene Symbol Synonym(s)=OsSWEET16;Note=Similar to CytoChrome c oxidoreductase.;Transcript_evidence=AK287729 (DDBJ%2C Best hit);ORF_evidence=Q10LN5 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=RAG1-activating protein-1-related (IPR004316);NIAS_FLcDNA=J065139E10;Oryzabase=9107;TENOR=Os03t0341300-01;KEGG=Os03t0341300-01
Chr03	irgsp1_rep	five_prime_UTR	12729779	12729800	.	+	.	Parent=Os03t0341300-01
Chr03	irgsp1_rep	CDS	12729801	12730022	.	+	0	Parent=Os03t0341300-01
Chr03	irgsp1_rep	CDS	12730673	12730792	.	+	0	Parent=Os03t0341300-01
Chr03	irgsp1_rep	CDS	12730879	12731301	.	+	0	Parent=Os03t0341300-01
Chr03	irgsp1_rep	three_prime_UTR	12731302	12731404	.	+	.	Parent=Os03t0341300-01
Chr03	irgsp1_rep	mRNA	12739354	12740552	.	-	.	ID=Os03t0341600-01;Name=Os03t0341600-01;Locus_id=Os03g0341600;Note=Pollen Ole e 1 allergen/extensin domain containing protein.;Transcript_evidence=AK067497 (DDBJ%2C Best hit);ORF_evidence=GeneMark;InterPro=Pollen Ole e 1 allergen/extensin (IPR006041);NIAS_FLcDNA=J013110O11;Expression=AK067497;TENOR=Os03t0341600-01;KEGG=Os03t0341600-01
Chr03	irgsp1_rep	five_prime_UTR	12740442	12740552	.	-	.	Parent=Os03t0341600-01
Chr03	irgsp1_rep	CDS	12740255	12740441	.	-	0	Parent=Os03t0341600-01
Chr03	irgsp1_rep	CDS	12739432	12739793	.	-	2	Parent=Os03t0341600-01
Chr03	irgsp1_rep	three_prime_UTR	12739354	12739431	.	-	.	Parent=Os03t0341600-01
Chr03	irgsp1_rep	mRNA	12753654	12754664	.	-	.	ID=Os03t0342100-01;Name=Os03t0342100-01;Locus_id=Os03g0342100;Note=Pollen Ole e 1 allergen/extensin domain containing protein.;Transcript_evidence=AK104974 (DDBJ%2C Best hit),AK072786 (DDBJ%2C Best hit);ORF_evidence=A2XGJ8 (UniProt);InterPro=Pollen Ole e 1 allergen/extensin (IPR006041);NIAS_FLcDNA=001-122-G12,J023141A02;TENOR=Os03t0342100-01
Chr03	irgsp1_rep	five_prime_UTR	12754542	12754664	.	-	.	Parent=Os03t0342100-01
Chr03	irgsp1_rep	CDS	12754358	12754541	.	-	0	Parent=Os03t0342100-01
Chr03	irgsp1_rep	CDS	12753924	12754258	.	-	2	Parent=Os03t0342100-01
Chr03	irgsp1_rep	three_prime_UTR	12753654	12753923	.	-	.	Parent=Os03t0342100-01
Chr03	irgsp1_rep	mRNA	12754978	12758693	.	+	.	ID=Os03t0342400-01;Name=Os03t0342400-01;Locus_id=Os03g0342400;Note=Similar to H0307D04.14 protein.;Transcript_evidence=AK289042 (DDBJ%2C Best hit);ORF_evidence=Q01K52 (UniProt);NIAS_FLcDNA=J090092D10;TENOR=Os03t0342400-01;KEGG=Os03t0342400-01
Chr03	irgsp1_rep	five_prime_UTR	12754978	12757111	.	+	.	Parent=Os03t0342400-01
Chr03	irgsp1_rep	CDS	12757112	12757645	.	+	0	Parent=Os03t0342400-01
Chr03	irgsp1_rep	three_prime_UTR	12757646	12758693	.	+	.	Parent=Os03t0342400-01
Chr03	irgsp1_rep	mRNA	12764508	12765877	.	+	.	ID=Os03t0342850-01;Name=Os03t0342850-01;Locus_id=Os03g0342850;Note=Hypothetical protein.;Transcript_evidence=AK109914 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-150-B02;Expression=AK109914;TENOR=Os03t0342850-01;KEGG=Os03t0342850-01
Chr03	irgsp1_rep	five_prime_UTR	12764508	12764692	.	+	.	Parent=Os03t0342850-01
Chr03	irgsp1_rep	CDS	12764693	12765184	.	+	0	Parent=Os03t0342850-01
Chr03	irgsp1_rep	three_prime_UTR	12765185	12765877	.	+	.	Parent=Os03t0342850-01
Chr03	irgsp1_rep	mRNA	12766569	12768878	.	-	.	ID=Os03t0342900-02;Name=Os03t0342900-02;Locus_id=Os03g0342900;Note=Dormancyauxin associated family protein.;Transcript_evidence=AK104391 (DDBJ%2C Best hit),AK060136 (DDBJ%2C Best hit),AK060980 (DDBJ%2C Best hit),AK104244 (DDBJ%2C Best hit),AK104590 (DDBJ%2C Best hit),AK104744 (DDBJ%2C Best hit),AK106100 (DDBJ%2C Best hit);ORF_evidence=B4FA62 (UniProt);NIAS_FLcDNA=006-201-H09,006-309-D12,006-202-G12,006-308-D04,006-307-H10,001-038-E04,001-207-C05;Expression=AK104391;TENOR=Os03t0342900-02;KEGG=Os03t0342900-02
Chr03	irgsp1_rep	five_prime_UTR	12768765	12768878	.	-	.	Parent=Os03t0342900-02
Chr03	irgsp1_rep	CDS	12768650	12768764	.	-	0	Parent=Os03t0342900-02
Chr03	irgsp1_rep	CDS	12768362	12768559	.	-	2	Parent=Os03t0342900-02
Chr03	irgsp1_rep	CDS	12767065	12767153	.	-	2	Parent=Os03t0342900-02
Chr03	irgsp1_rep	three_prime_UTR	12766569	12767064	.	-	.	Parent=Os03t0342900-02
Chr03	irgsp1_rep	mRNA	12766488	12768874	.	-	.	ID=Os03t0342900-04;Name=Os03t0342900-04;Locus_id=Os03g0342900;Note=Dormancyauxin associated family protein.;Transcript_evidence=AK064815 (DDBJ%2C Best hit);ORF_evidence=Q10LM8 (UniProt);InterPro=Dormancyauxin associated (IPR008406);NIAS_FLcDNA=J013000E10;Expression=AK064815;TENOR=Os03t0342900-04;KEGG=Os03t0342900-04
Chr03	irgsp1_rep	five_prime_UTR	12768765	12768874	.	-	.	Parent=Os03t0342900-04
Chr03	irgsp1_rep	CDS	12768648	12768764	.	-	0	Parent=Os03t0342900-04
Chr03	irgsp1_rep	CDS	12768362	12768524	.	-	0	Parent=Os03t0342900-04
Chr03	irgsp1_rep	CDS	12767065	12767153	.	-	2	Parent=Os03t0342900-04
Chr03	irgsp1_rep	three_prime_UTR	12766488	12767064	.	-	.	Parent=Os03t0342900-04
Chr03	irgsp1_rep	mRNA	12786599	12788679	.	-	.	ID=Os03t0343225-00;Name=Os03t0343225-00;Locus_id=Os03g0343225;Note=Hypothetical gene.;Transcript_evidence=EU951910 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0343225-00;KEGG=Os03t0343225-00
Chr03	irgsp1_rep	five_prime_UTR	12788679	12788679	.	-	.	Parent=Os03t0343225-00
Chr03	irgsp1_rep	CDS	12788358	12788678	.	-	0	Parent=Os03t0343225-00
Chr03	irgsp1_rep	CDS	12786709	12786756	.	-	0	Parent=Os03t0343225-00
Chr03	irgsp1_rep	three_prime_UTR	12786599	12786708	.	-	.	Parent=Os03t0343225-00
Chr03	irgsp1_rep	mRNA	12788382	12793276	.	+	.	ID=Os03t0343300-01;Name=Os03t0343300-01;Locus_id=Os03g0343300;Note=Small-subunit processome%2C Utp14 domain containing protein.;Transcript_evidence=AK243183 (DDBJ%2C Best hit);ORF_evidence=Q10LM2 (UniProt);GO=Biological Process: rRNA processing (GO:0006364),Cellular Component: small-subunit processome (GO:0032040);InterPro=Small-subunit processome%2C Utp14 (IPR006709);NIAS_FLcDNA=J100038J09;TENOR=Os03t0343300-01;KEGG=Os03t0343300-01
Chr03	irgsp1_rep	five_prime_UTR	12788382	12788476	.	+	.	Parent=Os03t0343300-01
Chr03	irgsp1_rep	CDS	12788477	12788830	.	+	0	Parent=Os03t0343300-01
Chr03	irgsp1_rep	CDS	12789070	12789196	.	+	0	Parent=Os03t0343300-01
Chr03	irgsp1_rep	CDS	12789495	12789943	.	+	2	Parent=Os03t0343300-01
Chr03	irgsp1_rep	CDS	12790145	12790366	.	+	0	Parent=Os03t0343300-01
Chr03	irgsp1_rep	CDS	12790448	12790756	.	+	0	Parent=Os03t0343300-01
Chr03	irgsp1_rep	CDS	12790868	12791206	.	+	0	Parent=Os03t0343300-01
Chr03	irgsp1_rep	CDS	12791280	12791360	.	+	0	Parent=Os03t0343300-01
Chr03	irgsp1_rep	CDS	12791437	12791532	.	+	0	Parent=Os03t0343300-01
Chr03	irgsp1_rep	CDS	12791622	12791996	.	+	0	Parent=Os03t0343300-01
Chr03	irgsp1_rep	CDS	12792176	12792307	.	+	0	Parent=Os03t0343300-01
Chr03	irgsp1_rep	CDS	12792738	12792908	.	+	0	Parent=Os03t0343300-01
Chr03	irgsp1_rep	three_prime_UTR	12792909	12793276	.	+	.	Parent=Os03t0343300-01
Chr03	irgsp1_rep	mRNA	12794533	12797944	.	+	.	ID=Os03t0343400-01;Name=Os03t0343400-01;Locus_id=Os03g0343400;Oryzabase Gene Symbol Synonym(s)=PHR2;Note=Similar to Photolyase/blue-light receptor PHR2.;Transcript_evidence=AK105611 (DDBJ%2C Best hit);ORF_evidence=B6U742 (UniProt);GO=Biological Process: DNA repair (GO:0006281),Molecular Function: DNA photolyase activity (GO:0003913);InterPro=DNA photolyase%2C FAD-binding/CryptoChrome%2C C-terminal (IPR005101),DNA photolyase%2C N-terminal (IPR006050),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=001-200-B05;Oryzabase=21438;Expression=AK105611;TENOR=Os03t0343400-01;KEGG=Os03t0343400-01
Chr03	irgsp1_rep	five_prime_UTR	12794533	12794558	.	+	.	Parent=Os03t0343400-01
Chr03	irgsp1_rep	CDS	12794559	12795521	.	+	0	Parent=Os03t0343400-01
Chr03	irgsp1_rep	CDS	12796777	12797006	.	+	0	Parent=Os03t0343400-01
Chr03	irgsp1_rep	CDS	12797117	12797215	.	+	1	Parent=Os03t0343400-01
Chr03	irgsp1_rep	CDS	12797463	12797550	.	+	1	Parent=Os03t0343400-01
Chr03	irgsp1_rep	three_prime_UTR	12797551	12797944	.	+	.	Parent=Os03t0343400-01
Chr03	irgsp1_rep	mRNA	12798173	12799742	.	-	.	ID=Os03t0343500-01;Name=Os03t0343500-01;Locus_id=Os03g0343500;Oryzabase Gene Symbol Synonym(s)=BIP108;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 108%2C BRI1-interacting protein 108%2C brassinosteroid receptor kinase-interacting protein 108%2C development-specific protein 217%2C EBER-associated protein;Note=Similar to 60S ribosomal protein L22-2.;Transcript_evidence=AK059599 (DDBJ%2C Best hit);ORF_evidence=B6U998 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L22e (IPR002671);NIAS_FLcDNA=001-030-E04;Oryzabase=13691;Expression=AK059599;TENOR=Os03t0343500-01;KEGG=Os03t0343500-01
Chr03	irgsp1_rep	five_prime_UTR	12799666	12799742	.	-	.	Parent=Os03t0343500-01
Chr03	irgsp1_rep	CDS	12799415	12799665	.	-	0	Parent=Os03t0343500-01
Chr03	irgsp1_rep	CDS	12798491	12798635	.	-	1	Parent=Os03t0343500-01
Chr03	irgsp1_rep	three_prime_UTR	12798173	12798490	.	-	.	Parent=Os03t0343500-01
Chr03	irgsp1_rep	mRNA	12798268	12799720	.	-	.	ID=Os03t0343500-03;Name=Os03t0343500-03;Locus_id=Os03g0343500;Oryzabase Gene Symbol Synonym(s)=BIP108;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 108%2C BRI1-interacting protein 108%2C brassinosteroid receptor kinase-interacting protein 108%2C development-specific protein 217%2C EBER-associated protein;Note=Similar to 60S ribosomal protein L22-2.;Transcript_evidence=AK121502 (DDBJ%2C Best hit),AK058737 (DDBJ%2C Best hit);ORF_evidence=B6U998 (UniProt);NIAS_FLcDNA=J033022G11,001-019-G04;Oryzabase=13691;Expression=AK121502;TENOR=Os03t0343500-03;KEGG=Os03t0343500-03
Chr03	irgsp1_rep	five_prime_UTR	12799666	12799720	.	-	.	Parent=Os03t0343500-03
Chr03	irgsp1_rep	CDS	12799415	12799665	.	-	0	Parent=Os03t0343500-03
Chr03	irgsp1_rep	CDS	12798491	12798635	.	-	1	Parent=Os03t0343500-03
Chr03	irgsp1_rep	three_prime_UTR	12798268	12798490	.	-	.	Parent=Os03t0343500-03
Chr03	irgsp1_rep	mRNA	12802141	12805135	.	+	.	ID=Os03t0343700-01;Name=Os03t0343700-01;Locus_id=Os03g0343700;Note=Brix domain containing protein.;Transcript_evidence=AK060603 (DDBJ%2C Best hit);ORF_evidence=XP_002864754.1 (RefSeq);InterPro=Brix domain (IPR007109);NIAS_FLcDNA=001-025-A01;Expression=AK060603;TENOR=Os03t0343700-01;KEGG=Os03t0343700-01
Chr03	irgsp1_rep	five_prime_UTR	12802141	12802225	.	+	.	Parent=Os03t0343700-01
Chr03	irgsp1_rep	CDS	12802226	12802243	.	+	0	Parent=Os03t0343700-01
Chr03	irgsp1_rep	CDS	12802354	12802596	.	+	0	Parent=Os03t0343700-01
Chr03	irgsp1_rep	CDS	12802710	12802940	.	+	0	Parent=Os03t0343700-01
Chr03	irgsp1_rep	CDS	12803062	12803154	.	+	0	Parent=Os03t0343700-01
Chr03	irgsp1_rep	CDS	12803239	12803426	.	+	0	Parent=Os03t0343700-01
Chr03	irgsp1_rep	CDS	12804377	12804570	.	+	1	Parent=Os03t0343700-01
Chr03	irgsp1_rep	CDS	12804668	12804783	.	+	2	Parent=Os03t0343700-01
Chr03	irgsp1_rep	three_prime_UTR	12804784	12805135	.	+	.	Parent=Os03t0343700-01
Chr03	irgsp1_rep	mRNA	12802163	12805135	.	+	.	ID=Os03t0343700-02;Name=Os03t0343700-02;Locus_id=Os03g0343700;Note=Similar to predicted protein.;Transcript_evidence=AK102274 (DDBJ%2C Best hit);ORF_evidence=XP_002864754.1 (RefSeq);InterPro=Brix domain (IPR007109);NIAS_FLcDNA=J033089C06;Expression=AK102274;TENOR=Os03t0343700-02;KEGG=Os03t0343700-02
Chr03	irgsp1_rep	five_prime_UTR	12802163	12802225	.	+	.	Parent=Os03t0343700-02
Chr03	irgsp1_rep	CDS	12802226	12802243	.	+	0	Parent=Os03t0343700-02
Chr03	irgsp1_rep	CDS	12802354	12802596	.	+	0	Parent=Os03t0343700-02
Chr03	irgsp1_rep	CDS	12802710	12803144	.	+	0	Parent=Os03t0343700-02
Chr03	irgsp1_rep	three_prime_UTR	12803145	12803154	.	+	.	Parent=Os03t0343700-02
Chr03	irgsp1_rep	three_prime_UTR	12803239	12803426	.	+	.	Parent=Os03t0343700-02
Chr03	irgsp1_rep	three_prime_UTR	12804377	12804570	.	+	.	Parent=Os03t0343700-02
Chr03	irgsp1_rep	three_prime_UTR	12804668	12805135	.	+	.	Parent=Os03t0343700-02
Chr03	irgsp1_rep	mRNA	12809226	12809783	.	+	.	ID=Os03t0343800-00;Name=Os03t0343800-00;Locus_id=Os03g0343800;Note=Conserved hypothetical protein.;Transcript_evidence=EU976763 (DDBJ);ORF_evidence=NP_001050080.1 (RefSeq);TENOR=Os03t0343800-00;KEGG=Os03t0343800-00
Chr03	irgsp1_rep	five_prime_UTR	12809226	12809318	.	+	.	Parent=Os03t0343800-00
Chr03	irgsp1_rep	CDS	12809319	12809726	.	+	0	Parent=Os03t0343800-00
Chr03	irgsp1_rep	three_prime_UTR	12809727	12809783	.	+	.	Parent=Os03t0343800-00
Chr03	irgsp1_rep	mRNA	12812218	12812882	.	+	.	ID=Os03t0343900-01;Name=Os03t0343900-01;Locus_id=Os03g0343900;CGSNL Gene Symbol=PSBX;CGSNL Gene Name=PHOTOSYSTEM II SUBUNIT;Oryzabase Gene Symbol Synonym(s)=PsbX;Oryzabase Gene Name Synonym(s)=PSII subunit PsbX%2C photosystem II subunit PsbX;Note=Photosystem II PsbX domain containing protein.;Transcript_evidence=AK105813 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: membrane (GO:0016020);InterPro=Photosystem II PsbX (IPR009518);NIAS_FLcDNA=001-203-C06;Oryzabase=9598;TENOR=Os03t0343900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	12812218	12812218	.	+	.	Parent=Os03t0343900-01
Chr03	irgsp1_rep	CDS	12812219	12812677	.	+	0	Parent=Os03t0343900-01
Chr03	irgsp1_rep	three_prime_UTR	12812678	12812882	.	+	.	Parent=Os03t0343900-01
Chr03	irgsp1_rep	mRNA	12814604	12819271	.	+	.	ID=Os03t0344100-01;Name=Os03t0344100-01;Locus_id=Os03g0344100;CGSNL Gene Symbol=SRP32;CGSNL Gene Name=SERINE/ARGININE-RICH PROTEIN 32;Oryzabase Gene Symbol Synonym(s)=Os-SR32%2C OsSR32%2C SR32%2C OsSRp32%2C Os-SRp32;Oryzabase Gene Name Synonym(s)=Serine/Arginine-Rich Protein Splicing Factor 32%2C Serine/Arginine-Rich Protein 32%2C SR Protein 32%2C SR subfamily protein 32;Note=Similar to ASF/SF2-like pre-mRNA splicing factor SRP32''.;Transcript_evidence=AK065547 (DDBJ%2C Best hit);ORF_evidence=Q64HC3 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013034E09;Oryzabase=22731;Expression=AK065547;TENOR=Os03t0344100-01;KEGG=Os03t0344100-01
Chr03	irgsp1_rep	five_prime_UTR	12814604	12814728	.	+	.	Parent=Os03t0344100-01
Chr03	irgsp1_rep	five_prime_UTR	12814969	12814994	.	+	.	Parent=Os03t0344100-01
Chr03	irgsp1_rep	CDS	12814995	12815081	.	+	0	Parent=Os03t0344100-01
Chr03	irgsp1_rep	CDS	12815492	12815557	.	+	0	Parent=Os03t0344100-01
Chr03	irgsp1_rep	CDS	12815673	12815747	.	+	0	Parent=Os03t0344100-01
Chr03	irgsp1_rep	CDS	12815830	12815938	.	+	0	Parent=Os03t0344100-01
Chr03	irgsp1_rep	CDS	12816029	12816075	.	+	2	Parent=Os03t0344100-01
Chr03	irgsp1_rep	CDS	12816172	12816229	.	+	0	Parent=Os03t0344100-01
Chr03	irgsp1_rep	CDS	12816969	12817018	.	+	2	Parent=Os03t0344100-01
Chr03	irgsp1_rep	CDS	12817235	12817291	.	+	0	Parent=Os03t0344100-01
Chr03	irgsp1_rep	CDS	12817375	12817460	.	+	0	Parent=Os03t0344100-01
Chr03	irgsp1_rep	CDS	12817534	12817635	.	+	1	Parent=Os03t0344100-01
Chr03	irgsp1_rep	CDS	12818152	12818209	.	+	1	Parent=Os03t0344100-01
Chr03	irgsp1_rep	three_prime_UTR	12818210	12818254	.	+	.	Parent=Os03t0344100-01
Chr03	irgsp1_rep	three_prime_UTR	12818339	12818450	.	+	.	Parent=Os03t0344100-01
Chr03	irgsp1_rep	three_prime_UTR	12818697	12818732	.	+	.	Parent=Os03t0344100-01
Chr03	irgsp1_rep	three_prime_UTR	12818825	12818899	.	+	.	Parent=Os03t0344100-01
Chr03	irgsp1_rep	three_prime_UTR	12818986	12819271	.	+	.	Parent=Os03t0344100-01
Chr03	irgsp1_rep	mRNA	12814668	12819290	.	+	.	ID=Os03t0344100-02;Name=Os03t0344100-02;Locus_id=Os03g0344100;CGSNL Gene Symbol=SRP32;CGSNL Gene Name=SERINE/ARGININE-RICH PROTEIN 32;Oryzabase Gene Symbol Synonym(s)=Os-SR32%2C OsSR32%2C SR32%2C OsSRp32%2C Os-SRp32;Oryzabase Gene Name Synonym(s)=Serine/Arginine-Rich Protein Splicing Factor 32%2C Serine/Arginine-Rich Protein 32%2C SR Protein 32%2C SR subfamily protein 32;Note=Similar to Alternative splicing regulator.;Transcript_evidence=AK061903 (DDBJ%2C Best hit);ORF_evidence=Q64HC3 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-041-H07;Oryzabase=22731;Expression=AK061903;TENOR=Os03t0344100-02;KEGG=Os03t0344100-02
Chr03	irgsp1_rep	five_prime_UTR	12814668	12814728	.	+	.	Parent=Os03t0344100-02
Chr03	irgsp1_rep	five_prime_UTR	12814969	12814994	.	+	.	Parent=Os03t0344100-02
Chr03	irgsp1_rep	CDS	12814995	12815081	.	+	0	Parent=Os03t0344100-02
Chr03	irgsp1_rep	CDS	12815492	12815557	.	+	0	Parent=Os03t0344100-02
Chr03	irgsp1_rep	CDS	12815673	12815747	.	+	0	Parent=Os03t0344100-02
Chr03	irgsp1_rep	CDS	12815830	12815938	.	+	0	Parent=Os03t0344100-02
Chr03	irgsp1_rep	CDS	12816029	12816075	.	+	2	Parent=Os03t0344100-02
Chr03	irgsp1_rep	CDS	12816172	12816229	.	+	0	Parent=Os03t0344100-02
Chr03	irgsp1_rep	CDS	12816969	12817018	.	+	2	Parent=Os03t0344100-02
Chr03	irgsp1_rep	CDS	12817235	12817291	.	+	0	Parent=Os03t0344100-02
Chr03	irgsp1_rep	CDS	12817375	12817460	.	+	0	Parent=Os03t0344100-02
Chr03	irgsp1_rep	CDS	12817534	12817635	.	+	1	Parent=Os03t0344100-02
Chr03	irgsp1_rep	CDS	12818699	12818732	.	+	1	Parent=Os03t0344100-02
Chr03	irgsp1_rep	CDS	12818825	12818899	.	+	0	Parent=Os03t0344100-02
Chr03	irgsp1_rep	CDS	12818986	12819000	.	+	0	Parent=Os03t0344100-02
Chr03	irgsp1_rep	three_prime_UTR	12819001	12819290	.	+	.	Parent=Os03t0344100-02
Chr03	irgsp1_rep	mRNA	12820585	12821849	.	+	.	ID=Os03t0344232-00;Name=Os03t0344232-00;Locus_id=Os03g0344232;Note=Conserved hypothetical protein.;Transcript_evidence=CT835238 (DDBJ%2C Best hit);ORF_evidence=Q10RS8 (UniProt);TENOR=Os03t0344232-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	12820585	12820586	.	+	.	Parent=Os03t0344232-00
Chr03	irgsp1_rep	CDS	12820587	12821003	.	+	0	Parent=Os03t0344232-00
Chr03	irgsp1_rep	CDS	12821542	12821616	.	+	0	Parent=Os03t0344232-00
Chr03	irgsp1_rep	three_prime_UTR	12821617	12821849	.	+	.	Parent=Os03t0344232-00
Chr03	irgsp1_rep	mRNA	12823982	12828278	.	-	.	ID=Os03t0344300-01;Name=Os03t0344300-01;Locus_id=Os03g0344300;CGSNL Gene Symbol=FUG1;Oryzabase Gene Symbol Synonym(s)=OsFUG1;Oryzabase Gene Name Synonym(s)=SUMO protease protein;Note=Similar to Ulp1 protease family%2C C-terminal catalytic domain containing protein%2C expressed.;Transcript_evidence=AK073314 (DDBJ%2C Best hit);ORF_evidence=Q10LL1 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase C48%2C SUMO/Sentrin/Ubl1 (IPR003653);NIAS_FLcDNA=J033024M21;Oryzabase=20942;Expression=AK073314;TENOR=Os03t0344300-01;KEGG=Os03t0344300-01 (EC:3.4.22.-)
Chr03	irgsp1_rep	five_prime_UTR	12828124	12828278	.	-	.	Parent=Os03t0344300-01
Chr03	irgsp1_rep	CDS	12827593	12828123	.	-	0	Parent=Os03t0344300-01
Chr03	irgsp1_rep	CDS	12827030	12827109	.	-	0	Parent=Os03t0344300-01
Chr03	irgsp1_rep	CDS	12826850	12826943	.	-	1	Parent=Os03t0344300-01
Chr03	irgsp1_rep	CDS	12826589	12826687	.	-	0	Parent=Os03t0344300-01
Chr03	irgsp1_rep	CDS	12825367	12825459	.	-	0	Parent=Os03t0344300-01
Chr03	irgsp1_rep	CDS	12825150	12825269	.	-	0	Parent=Os03t0344300-01
Chr03	irgsp1_rep	CDS	12824787	12824890	.	-	0	Parent=Os03t0344300-01
Chr03	irgsp1_rep	CDS	12824448	12824520	.	-	1	Parent=Os03t0344300-01
Chr03	irgsp1_rep	CDS	12824189	12824251	.	-	0	Parent=Os03t0344300-01
Chr03	irgsp1_rep	three_prime_UTR	12823982	12824188	.	-	.	Parent=Os03t0344300-01
Chr03	irgsp1_rep	mRNA	12823607	12828217	.	-	.	ID=Os03t0344300-02;Name=Os03t0344300-02;Locus_id=Os03g0344300;CGSNL Gene Symbol=FUG1;Oryzabase Gene Symbol Synonym(s)=OsFUG1;Oryzabase Gene Name Synonym(s)=SUMO protease protein;Note=Similar to Ulp1 protease family%2C C-terminal catalytic domain containing protein%2C expressed.;Transcript_evidence=AK068651 (DDBJ%2C Best hit);ORF_evidence=Q10LL2 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase C48%2C SUMO/Sentrin/Ubl1 (IPR003653);NIAS_FLcDNA=J013159A19;Oryzabase=20942;TENOR=Os03t0344300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	12828124	12828217	.	-	.	Parent=Os03t0344300-02
Chr03	irgsp1_rep	CDS	12827593	12828123	.	-	0	Parent=Os03t0344300-02
Chr03	irgsp1_rep	CDS	12827030	12827109	.	-	0	Parent=Os03t0344300-02
Chr03	irgsp1_rep	CDS	12826850	12826943	.	-	1	Parent=Os03t0344300-02
Chr03	irgsp1_rep	CDS	12826589	12826687	.	-	0	Parent=Os03t0344300-02
Chr03	irgsp1_rep	CDS	12825575	12825721	.	-	0	Parent=Os03t0344300-02
Chr03	irgsp1_rep	three_prime_UTR	12825367	12825574	.	-	.	Parent=Os03t0344300-02
Chr03	irgsp1_rep	three_prime_UTR	12825150	12825269	.	-	.	Parent=Os03t0344300-02
Chr03	irgsp1_rep	three_prime_UTR	12824787	12824890	.	-	.	Parent=Os03t0344300-02
Chr03	irgsp1_rep	three_prime_UTR	12824448	12824520	.	-	.	Parent=Os03t0344300-02
Chr03	irgsp1_rep	three_prime_UTR	12823607	12824251	.	-	.	Parent=Os03t0344300-02
Chr03	irgsp1_rep	mRNA	12830649	12831782	.	+	.	ID=Os03t0344400-00;Name=Os03t0344400-00;Locus_id=Os03g0344400;Note=Hypothetical conserved gene.;Transcript_evidence=CT841857 (DDBJ%2C Best hit);ORF_evidence=B9F6A2 (UniProt);TENOR=Os03t0344400-00;KEGG=Os03t0344400-00
Chr03	irgsp1_rep	five_prime_UTR	12830649	12830773	.	+	.	Parent=Os03t0344400-00
Chr03	irgsp1_rep	CDS	12830774	12831451	.	+	0	Parent=Os03t0344400-00
Chr03	irgsp1_rep	three_prime_UTR	12831452	12831782	.	+	.	Parent=Os03t0344400-00
Chr03	irgsp1_rep	mRNA	12834478	12834993	.	-	.	ID=Os03t0344650-00;Name=Os03t0344650-00;Locus_id=Os03g0344650;Note=Hypothetical protein.;Transcript_evidence=EU943048 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0344650-00
Chr03	irgsp1_rep	CDS	12834478	12834993	.	-	0	Parent=Os03t0344650-00
Chr03	irgsp1_rep	mRNA	12836187	12845182	.	-	.	ID=Os03t0344700-01;Name=Os03t0344700-01;Locus_id=Os03g0344700;Note=Similar to AAA-type ATPase family protein.;Transcript_evidence=AK066938 (DDBJ%2C Best hit);ORF_evidence=XP_002872834.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);NIAS_FLcDNA=J013093A20;TENOR=Os03t0344700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	12845182	12845182	.	-	.	Parent=Os03t0344700-01
Chr03	irgsp1_rep	CDS	12845057	12845181	.	-	0	Parent=Os03t0344700-01
Chr03	irgsp1_rep	CDS	12844204	12844325	.	-	1	Parent=Os03t0344700-01
Chr03	irgsp1_rep	CDS	12843993	12844084	.	-	2	Parent=Os03t0344700-01
Chr03	irgsp1_rep	CDS	12843711	12843747	.	-	0	Parent=Os03t0344700-01
Chr03	irgsp1_rep	CDS	12843435	12843495	.	-	2	Parent=Os03t0344700-01
Chr03	irgsp1_rep	CDS	12842988	12843136	.	-	1	Parent=Os03t0344700-01
Chr03	irgsp1_rep	CDS	12842778	12842848	.	-	2	Parent=Os03t0344700-01
Chr03	irgsp1_rep	CDS	12842527	12842697	.	-	0	Parent=Os03t0344700-01
Chr03	irgsp1_rep	CDS	12842359	12842427	.	-	0	Parent=Os03t0344700-01
Chr03	irgsp1_rep	CDS	12841118	12841216	.	-	0	Parent=Os03t0344700-01
Chr03	irgsp1_rep	CDS	12840931	12841020	.	-	0	Parent=Os03t0344700-01
Chr03	irgsp1_rep	CDS	12840131	12840206	.	-	0	Parent=Os03t0344700-01
Chr03	irgsp1_rep	CDS	12839954	12840053	.	-	2	Parent=Os03t0344700-01
Chr03	irgsp1_rep	CDS	12839793	12839868	.	-	1	Parent=Os03t0344700-01
Chr03	irgsp1_rep	CDS	12839393	12839572	.	-	0	Parent=Os03t0344700-01
Chr03	irgsp1_rep	CDS	12838869	12838991	.	-	0	Parent=Os03t0344700-01
Chr03	irgsp1_rep	CDS	12838702	12838785	.	-	0	Parent=Os03t0344700-01
Chr03	irgsp1_rep	CDS	12838424	12838608	.	-	0	Parent=Os03t0344700-01
Chr03	irgsp1_rep	CDS	12838175	12838313	.	-	1	Parent=Os03t0344700-01
Chr03	irgsp1_rep	CDS	12838012	12838071	.	-	0	Parent=Os03t0344700-01
Chr03	irgsp1_rep	CDS	12837725	12837829	.	-	0	Parent=Os03t0344700-01
Chr03	irgsp1_rep	CDS	12836757	12836870	.	-	0	Parent=Os03t0344700-01
Chr03	irgsp1_rep	three_prime_UTR	12836187	12836756	.	-	.	Parent=Os03t0344700-01
Chr03	irgsp1_rep	mRNA	12854376	12859361	.	-	.	ID=Os03t0344900-00;Name=Os03t0344900-00;Locus_id=Os03g0344900;Oryzabase Gene Symbol Synonym(s)=OsClp5%2C CLP5;Oryzabase Gene Name Synonym(s)=Clp protease 5%2C CLP PROTEASE 5;Note=Similar to ATP-dependent Clp protease proteolytic subunit.;Transcript_evidence=AK333916 (DDBJ);ORF_evidence=Q10LK7 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S14%2C ClpP (IPR001907),Peptidase S14/S49 (IPR023562);Oryzabase=20033;TENOR=Os03t0344900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	12859312	12859361	.	-	.	Parent=Os03t0344900-00
Chr03	irgsp1_rep	CDS	12858979	12859311	.	-	0	Parent=Os03t0344900-00
Chr03	irgsp1_rep	CDS	12857430	12857534	.	-	0	Parent=Os03t0344900-00
Chr03	irgsp1_rep	CDS	12856858	12856980	.	-	0	Parent=Os03t0344900-00
Chr03	irgsp1_rep	CDS	12856195	12856254	.	-	0	Parent=Os03t0344900-00
Chr03	irgsp1_rep	CDS	12855665	12855761	.	-	0	Parent=Os03t0344900-00
Chr03	irgsp1_rep	CDS	12855518	12855591	.	-	2	Parent=Os03t0344900-00
Chr03	irgsp1_rep	CDS	12855318	12855371	.	-	0	Parent=Os03t0344900-00
Chr03	irgsp1_rep	CDS	12855155	12855238	.	-	0	Parent=Os03t0344900-00
Chr03	irgsp1_rep	CDS	12854812	12854907	.	-	0	Parent=Os03t0344900-00
Chr03	irgsp1_rep	three_prime_UTR	12854764	12854811	.	-	.	Parent=Os03t0344900-00
Chr03	irgsp1_rep	three_prime_UTR	12854376	12854666	.	-	.	Parent=Os03t0344900-00
Chr03	irgsp1_rep	mRNA	12865230	12869288	.	-	.	ID=Os03t0345100-01;Name=Os03t0345100-01;Locus_id=Os03g0345100;Oryzabase Gene Symbol Synonym(s)=Arf75;Oryzabase Gene Name Synonym(s)=auxin response factor 75;Note=Similar to auxin response factor 75.;Transcript_evidence=AK065579 (DDBJ%2C Best hit);ORF_evidence=NP_001149782.1 (RefSeq);GO=Biological Process: DNA repair (GO:0006281);InterPro=Rad9 (IPR007268),Cell cycle checkpoint%2C RAD9 (IPR016552);NIAS_FLcDNA=J013031C20;Oryzabase=19686;TENOR=Os03t0345100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	12869288	12869288	.	-	.	Parent=Os03t0345100-01
Chr03	irgsp1_rep	CDS	12869239	12869287	.	-	0	Parent=Os03t0345100-01
Chr03	irgsp1_rep	CDS	12869084	12869187	.	-	2	Parent=Os03t0345100-01
Chr03	irgsp1_rep	CDS	12868818	12868971	.	-	0	Parent=Os03t0345100-01
Chr03	irgsp1_rep	CDS	12868713	12868769	.	-	2	Parent=Os03t0345100-01
Chr03	irgsp1_rep	CDS	12868290	12868547	.	-	2	Parent=Os03t0345100-01
Chr03	irgsp1_rep	CDS	12868068	12868183	.	-	2	Parent=Os03t0345100-01
Chr03	irgsp1_rep	CDS	12867497	12867561	.	-	0	Parent=Os03t0345100-01
Chr03	irgsp1_rep	CDS	12867198	12867424	.	-	1	Parent=Os03t0345100-01
Chr03	irgsp1_rep	CDS	12866782	12866929	.	-	2	Parent=Os03t0345100-01
Chr03	irgsp1_rep	CDS	12865668	12865708	.	-	1	Parent=Os03t0345100-01
Chr03	irgsp1_rep	CDS	12865443	12865567	.	-	2	Parent=Os03t0345100-01
Chr03	irgsp1_rep	three_prime_UTR	12865230	12865442	.	-	.	Parent=Os03t0345100-01
Chr03	irgsp1_rep	mRNA	12869436	12871135	.	+	.	ID=Os03t0345200-01;Name=Os03t0345200-01;Locus_id=Os03g0345200;CGSNL Gene Symbol=RPS21;CGSNL Gene Name=RIBOSOMAL PROTEIN S21;Oryzabase Gene Symbol Synonym(s)=rps21;Oryzabase Gene Name Synonym(s)=ribosomal protein small subunit 21%2C r-protein S21%2C ribosomal protein S21%2C Ribosomal protein YS25;Note=40S ribosomal protein S21.;Transcript_evidence=AK073724 (DDBJ%2C Best hit),AK104084 (DDBJ%2C Best hit),AK119262 (DDBJ%2C Best hit);ORF_evidence=P35687 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S21e (IPR001931),Ribosomal protein S21e%2C conserved site (IPR018279);NIAS_FLcDNA=J033063G24,001-029-E05,001-125-H10;Oryzabase=15710;TENOR=Os03t0345200-01
Chr03	irgsp1_rep	five_prime_UTR	12869436	12869504	.	+	.	Parent=Os03t0345200-01
Chr03	irgsp1_rep	five_prime_UTR	12869998	12870032	.	+	.	Parent=Os03t0345200-01
Chr03	irgsp1_rep	CDS	12870033	12870082	.	+	0	Parent=Os03t0345200-01
Chr03	irgsp1_rep	CDS	12870172	12870304	.	+	1	Parent=Os03t0345200-01
Chr03	irgsp1_rep	CDS	12870902	12870967	.	+	0	Parent=Os03t0345200-01
Chr03	irgsp1_rep	three_prime_UTR	12870968	12871135	.	+	.	Parent=Os03t0345200-01
Chr03	irgsp1_rep	mRNA	12871676	12873556	.	-	.	ID=Os03t0345300-01;Name=Os03t0345300-01;Locus_id=Os03g0345300;Note=Similar to Desiccation-related protein Lb_13-62 (Fragment).;Transcript_evidence=AK108277 (DDBJ%2C Best hit);ORF_evidence=B1PMG8 (UniProt);NIAS_FLcDNA=002-141-C09;Expression=AK108277;TENOR=Os03t0345300-01;KEGG=Os03t0345300-01
Chr03	irgsp1_rep	five_prime_UTR	12873539	12873556	.	-	.	Parent=Os03t0345300-01
Chr03	irgsp1_rep	CDS	12873102	12873538	.	-	0	Parent=Os03t0345300-01
Chr03	irgsp1_rep	CDS	12871724	12872348	.	-	1	Parent=Os03t0345300-01
Chr03	irgsp1_rep	three_prime_UTR	12871676	12871723	.	-	.	Parent=Os03t0345300-01
Chr03	irgsp1_rep	mRNA	12872925	12873554	.	-	.	ID=Os03t0345300-02;Name=Os03t0345300-02;Locus_id=Os03g0345300;Note=Similar to predicted protein.;Transcript_evidence=AK109264 (DDBJ%2C Best hit);ORF_evidence=B6TNA6 (UniProt);NIAS_FLcDNA=002-185-B05;Expression=AK109264;TENOR=Os03t0345300-02;KEGG=Os03t0345300-02
Chr03	irgsp1_rep	five_prime_UTR	12873539	12873554	.	-	.	Parent=Os03t0345300-02
Chr03	irgsp1_rep	CDS	12873083	12873538	.	-	0	Parent=Os03t0345300-02
Chr03	irgsp1_rep	three_prime_UTR	12872925	12873082	.	-	.	Parent=Os03t0345300-02
Chr03	irgsp1_rep	mRNA	12871757	12873392	.	+	.	ID=Os03t0345500-00;Name=Os03t0345500-00;Locus_id=Os03g0345500;Note=Non-protein coding transcript.;Transcript_evidence=EU975566 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0345500-00
Chr03	irgsp1_rep	exon	12871757	12872355	.	+	.	Parent=Os03t0345500-00
Chr03	irgsp1_rep	exon	12873107	12873392	.	+	.	Parent=Os03t0345500-00
Chr03	irgsp1_rep	mRNA	12906020	12907083	.	-	.	ID=Os03t0345700-01;Name=Os03t0345700-01;Locus_id=Os03g0345700;Note=Similar to Heavy metal-associated domain containing protein%2C expressed.;Transcript_evidence=AK066080 (DDBJ%2C Best hit);ORF_evidence=Q10LJ9 (UniProt);NIAS_FLcDNA=J013051K22;TENOR=Os03t0345700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	12907083	12907083	.	-	.	Parent=Os03t0345700-01
Chr03	irgsp1_rep	CDS	12906330	12907082	.	-	0	Parent=Os03t0345700-01
Chr03	irgsp1_rep	three_prime_UTR	12906020	12906329	.	-	.	Parent=Os03t0345700-01
Chr03	irgsp1_rep	mRNA	12906330	12907521	.	+	.	ID=Os03t0345901-00;Name=Os03t0345901-00;Locus_id=Os03g0345901;Note=Hypothetical gene.;Transcript_evidence=EU973702 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0345901-00;KEGG=Os03t0345901-00
Chr03	irgsp1_rep	CDS	12906330	12906405	.	+	0	Parent=Os03t0345901-00
Chr03	irgsp1_rep	CDS	12906565	12907328	.	+	2	Parent=Os03t0345901-00
Chr03	irgsp1_rep	three_prime_UTR	12907329	12907521	.	+	.	Parent=Os03t0345901-00
Chr03	irgsp1_rep	mRNA	12929937	12930797	.	-	.	ID=Os03t0346200-01;Name=Os03t0346200-01;Locus_id=Os03g0346200;RAP-DB Gene Symbol Synonym(s)=ACE1%2C OsSIN;RAP-DB Gene Name Synonym(s)=ACCELERATOR OF INTERNODE%2C SHORT INTERNODESELONGATION 1;Note=Regulation of internodes development (Taichung 65: nonfunctional);Transcript_evidence=AF545810,Inferred from literature;ORF_evidence=Q4H1D2;Manual Curation=July 17%2C 2020;Literature_PMID=32669710,DOI:10.1016/j.plantsci.2005.03.029;TENOR=Os03t0346150-00,Os03t0346200-00;Subcellular location=nucleus (GO:0005634)
Chr03	irgsp1_rep	five_prime_UTR	12930789	12930797	.	-	.	Parent=Os03t0346200-01
Chr03	irgsp1_rep	CDS	12930468	12930788	.	-	0	Parent=Os03t0346200-01
Chr03	irgsp1_rep	three_prime_UTR	12929937	12930467	.	-	.	Parent=Os03t0346200-01
Chr03	irgsp1_rep	mRNA	12937664	12938215	.	-	.	ID=Os03t0346500-01;Name=Os03t0346500-01;Locus_id=Os03g0346500;Note=Conserved hypothetical protein.;Transcript_evidence=AK063139 (DDBJ%2C Best hit);ORF_evidence=B8APF0 (UniProt);NIAS_FLcDNA=001-111-G06;Expression=AK063139;TENOR=Os03t0346500-01;KEGG=Os03t0346500-01
Chr03	irgsp1_rep	five_prime_UTR	12938144	12938215	.	-	.	Parent=Os03t0346500-01
Chr03	irgsp1_rep	CDS	12937895	12938143	.	-	0	Parent=Os03t0346500-01
Chr03	irgsp1_rep	three_prime_UTR	12937664	12937894	.	-	.	Parent=Os03t0346500-01
Chr03	irgsp1_rep	mRNA	12945591	12952532	.	+	.	ID=Os03t0346700-01;Name=Os03t0346700-01;Locus_id=Os03g0346700;Oryzabase Gene Symbol Synonym(s)=JMJ716;Oryzabase Gene Name Synonym(s)=Jumonji 716;Note=Similar to JmjC domain containing protein%2C expressed.;Transcript_evidence=AK289253 (DDBJ%2C Best hit);ORF_evidence=Q10LJ3 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Transcription factor jumonji/aspartyl beta-hydroxylase (IPR003347),Transcription factor jumonji (IPR013129),WRC (IPR014977);NIAS_FLcDNA=J100081J07;Oryzabase=15209;TENOR=Os03t0346700-01;KEGG=Os03t0346700-01
Chr03	irgsp1_rep	five_prime_UTR	12945591	12945970	.	+	.	Parent=Os03t0346700-01
Chr03	irgsp1_rep	CDS	12945971	12946348	.	+	0	Parent=Os03t0346700-01
Chr03	irgsp1_rep	CDS	12946437	12946594	.	+	0	Parent=Os03t0346700-01
Chr03	irgsp1_rep	CDS	12947508	12947607	.	+	1	Parent=Os03t0346700-01
Chr03	irgsp1_rep	CDS	12947718	12947850	.	+	0	Parent=Os03t0346700-01
Chr03	irgsp1_rep	CDS	12947943	12947997	.	+	2	Parent=Os03t0346700-01
Chr03	irgsp1_rep	CDS	12948081	12948840	.	+	1	Parent=Os03t0346700-01
Chr03	irgsp1_rep	CDS	12949216	12949545	.	+	0	Parent=Os03t0346700-01
Chr03	irgsp1_rep	CDS	12950035	12950454	.	+	0	Parent=Os03t0346700-01
Chr03	irgsp1_rep	CDS	12950551	12950623	.	+	0	Parent=Os03t0346700-01
Chr03	irgsp1_rep	CDS	12951067	12951152	.	+	2	Parent=Os03t0346700-01
Chr03	irgsp1_rep	CDS	12951649	12951768	.	+	0	Parent=Os03t0346700-01
Chr03	irgsp1_rep	CDS	12951862	12951932	.	+	0	Parent=Os03t0346700-01
Chr03	irgsp1_rep	CDS	12952126	12952225	.	+	1	Parent=Os03t0346700-01
Chr03	irgsp1_rep	three_prime_UTR	12952226	12952532	.	+	.	Parent=Os03t0346700-01
Chr03	irgsp1_rep	mRNA	12945817	12952528	.	+	.	ID=Os03t0346700-02;Name=Os03t0346700-02;Locus_id=Os03g0346700;Oryzabase Gene Symbol Synonym(s)=JMJ716;Oryzabase Gene Name Synonym(s)=Jumonji 716;Note=Similar to JmjC domain containing protein%2C expressed.;Transcript_evidence=AK241959 (DDBJ%2C Best hit);ORF_evidence=Q10LJ3 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Transcription factor jumonji/aspartyl beta-hydroxylase (IPR003347),Transcription factor jumonji (IPR013129),WRC (IPR014977);NIAS_FLcDNA=J075093D20;Oryzabase=15209;TENOR=Os03t0346700-02;KEGG=Os03t0346700-02
Chr03	irgsp1_rep	five_prime_UTR	12945817	12945970	.	+	.	Parent=Os03t0346700-02
Chr03	irgsp1_rep	CDS	12945971	12946348	.	+	0	Parent=Os03t0346700-02
Chr03	irgsp1_rep	CDS	12946437	12946594	.	+	0	Parent=Os03t0346700-02
Chr03	irgsp1_rep	CDS	12947508	12947607	.	+	1	Parent=Os03t0346700-02
Chr03	irgsp1_rep	CDS	12947718	12947850	.	+	0	Parent=Os03t0346700-02
Chr03	irgsp1_rep	CDS	12947943	12947997	.	+	2	Parent=Os03t0346700-02
Chr03	irgsp1_rep	CDS	12948081	12948840	.	+	1	Parent=Os03t0346700-02
Chr03	irgsp1_rep	CDS	12949216	12949545	.	+	0	Parent=Os03t0346700-02
Chr03	irgsp1_rep	CDS	12950035	12950454	.	+	0	Parent=Os03t0346700-02
Chr03	irgsp1_rep	CDS	12950551	12950623	.	+	0	Parent=Os03t0346700-02
Chr03	irgsp1_rep	CDS	12951067	12951152	.	+	2	Parent=Os03t0346700-02
Chr03	irgsp1_rep	CDS	12951649	12951768	.	+	0	Parent=Os03t0346700-02
Chr03	irgsp1_rep	CDS	12951862	12951932	.	+	0	Parent=Os03t0346700-02
Chr03	irgsp1_rep	CDS	12952126	12952225	.	+	1	Parent=Os03t0346700-02
Chr03	irgsp1_rep	three_prime_UTR	12952226	12952528	.	+	.	Parent=Os03t0346700-02
Chr03	irgsp1_rep	mRNA	12945689	12946612	.	-	.	ID=Os03t0346750-00;Name=Os03t0346750-00;Locus_id=Os03g0346750;Note=Hypothetical gene.;Transcript_evidence=EU947945 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0346750-00;KEGG=Os03t0346750-00
Chr03	irgsp1_rep	five_prime_UTR	12946515	12946612	.	-	.	Parent=Os03t0346750-00
Chr03	irgsp1_rep	CDS	12945951	12946514	.	-	0	Parent=Os03t0346750-00
Chr03	irgsp1_rep	CDS	12945807	12945890	.	-	0	Parent=Os03t0346750-00
Chr03	irgsp1_rep	three_prime_UTR	12945689	12945806	.	-	.	Parent=Os03t0346750-00
Chr03	irgsp1_rep	mRNA	12954637	12959631	.	+	.	ID=Os03t0346800-00;Name=Os03t0346800-00;Locus_id=Os03g0346800;CGSNL Gene Symbol=MTP6;CGSNL Gene Name=METAL TOLERANCE PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsMTP6;Oryzabase Gene Name Synonym(s)=metal tolerance protein 6;Note=Similar to metal tolerance protein.;Transcript_evidence=EU971184 (DDBJ);ORF_evidence=Q10LJ2 (UniProt);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: cation transmembrane transporter activity (GO:0008324);InterPro=Cation efflux protein (IPR002524);Oryzabase=13409;TENOR=Os03t0346800-00;KEGG=Os03t0346800-00
Chr03	irgsp1_rep	CDS	12954637	12954987	.	+	0	Parent=Os03t0346800-00
Chr03	irgsp1_rep	CDS	12955085	12955154	.	+	0	Parent=Os03t0346800-00
Chr03	irgsp1_rep	CDS	12955966	12956063	.	+	2	Parent=Os03t0346800-00
Chr03	irgsp1_rep	CDS	12956243	12956391	.	+	0	Parent=Os03t0346800-00
Chr03	irgsp1_rep	CDS	12956859	12956974	.	+	1	Parent=Os03t0346800-00
Chr03	irgsp1_rep	CDS	12957297	12957393	.	+	2	Parent=Os03t0346800-00
Chr03	irgsp1_rep	CDS	12957898	12957982	.	+	1	Parent=Os03t0346800-00
Chr03	irgsp1_rep	CDS	12958079	12958141	.	+	0	Parent=Os03t0346800-00
Chr03	irgsp1_rep	CDS	12958281	12958386	.	+	0	Parent=Os03t0346800-00
Chr03	irgsp1_rep	CDS	12958933	12959072	.	+	2	Parent=Os03t0346800-00
Chr03	irgsp1_rep	CDS	12959146	12959237	.	+	0	Parent=Os03t0346800-00
Chr03	irgsp1_rep	CDS	12959328	12959490	.	+	1	Parent=Os03t0346800-00
Chr03	irgsp1_rep	three_prime_UTR	12959491	12959631	.	+	.	Parent=Os03t0346800-00
Chr03	irgsp1_rep	mRNA	12961404	12964587	.	-	.	ID=Os03t0346900-01;Name=Os03t0346900-01;Locus_id=Os03g0346900;Note=Conserved hypothetical protein.;Transcript_evidence=AK064125 (DDBJ%2C Best hit);ORF_evidence=B9F8F2 (UniProt);NIAS_FLcDNA=002-102-D06;TENOR=Os03t0346900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	12964586	12964587	.	-	.	Parent=Os03t0346900-01
Chr03	irgsp1_rep	CDS	12964445	12964585	.	-	0	Parent=Os03t0346900-01
Chr03	irgsp1_rep	CDS	12962208	12963660	.	-	0	Parent=Os03t0346900-01
Chr03	irgsp1_rep	CDS	12961746	12961813	.	-	2	Parent=Os03t0346900-01
Chr03	irgsp1_rep	three_prime_UTR	12961404	12961745	.	-	.	Parent=Os03t0346900-01
Chr03	irgsp1_rep	mRNA	12976163	12988178	.	+	.	ID=Os03t0347200-01;Name=Os03t0347200-01;Locus_id=Os03g0347200;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=AK102852 (DDBJ%2C Best hit);ORF_evidence=Q10LJ0 (UniProt);GO=Biological Process: RNA metabolic process (GO:0016070),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=MIF4G-like%2C type 3 (IPR003890),MIF4G-like%2C type 1 (IPR015172),MIF4G-like%2C type 2 (IPR015174),MIF4-like%2C type 1/2/3 (IPR016021),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033110I07;Expression=AK102852;TENOR=Os03t0347200-01;KEGG=Os03t0347200-01
Chr03	irgsp1_rep	five_prime_UTR	12976163	12976219	.	+	.	Parent=Os03t0347200-01
Chr03	irgsp1_rep	CDS	12976220	12976306	.	+	0	Parent=Os03t0347200-01
Chr03	irgsp1_rep	CDS	12977193	12977252	.	+	0	Parent=Os03t0347200-01
Chr03	irgsp1_rep	CDS	12977847	12977903	.	+	0	Parent=Os03t0347200-01
Chr03	irgsp1_rep	CDS	12978609	12978680	.	+	0	Parent=Os03t0347200-01
Chr03	irgsp1_rep	CDS	12978826	12978888	.	+	0	Parent=Os03t0347200-01
Chr03	irgsp1_rep	CDS	12979731	12979907	.	+	0	Parent=Os03t0347200-01
Chr03	irgsp1_rep	CDS	12980279	12980404	.	+	0	Parent=Os03t0347200-01
Chr03	irgsp1_rep	CDS	12980487	12980553	.	+	0	Parent=Os03t0347200-01
Chr03	irgsp1_rep	CDS	12980795	12980991	.	+	2	Parent=Os03t0347200-01
Chr03	irgsp1_rep	CDS	12981784	12981854	.	+	0	Parent=Os03t0347200-01
Chr03	irgsp1_rep	CDS	12983494	12983578	.	+	1	Parent=Os03t0347200-01
Chr03	irgsp1_rep	CDS	12983896	12983964	.	+	0	Parent=Os03t0347200-01
Chr03	irgsp1_rep	CDS	12984739	12984857	.	+	0	Parent=Os03t0347200-01
Chr03	irgsp1_rep	CDS	12985079	12985217	.	+	1	Parent=Os03t0347200-01
Chr03	irgsp1_rep	CDS	12985314	12985814	.	+	0	Parent=Os03t0347200-01
Chr03	irgsp1_rep	CDS	12986069	12986368	.	+	0	Parent=Os03t0347200-01
Chr03	irgsp1_rep	CDS	12986470	12986651	.	+	0	Parent=Os03t0347200-01
Chr03	irgsp1_rep	CDS	12987053	12987164	.	+	1	Parent=Os03t0347200-01
Chr03	irgsp1_rep	CDS	12987729	12987848	.	+	0	Parent=Os03t0347200-01
Chr03	irgsp1_rep	three_prime_UTR	12987849	12988178	.	+	.	Parent=Os03t0347200-01
Chr03	irgsp1_rep	mRNA	12985079	12988055	.	+	.	ID=Os03t0347200-02;Name=Os03t0347200-02;Locus_id=Os03g0347200;Note=Similar to Nuclear cap-binding protein CBP80.;Transcript_evidence=AK058969 (DDBJ%2C Best hit);ORF_evidence=Q10LJ0 (UniProt);GO=Biological Process: RNA metabolic process (GO:0016070),Molecular Function: binding (GO:0005488);InterPro=MIF4G-like%2C type 1 (IPR015172),MIF4G-like%2C type 2 (IPR015174),MIF4-like%2C type 1/2/3 (IPR016021),Armadillo-type fold (IPR016024);NIAS_FLcDNA=001-020-C11;Expression=AK058969;TENOR=Os03t0347200-02;KEGG=Os03t0347200-02
Chr03	irgsp1_rep	five_prime_UTR	12985079	12985079	.	+	.	Parent=Os03t0347200-02
Chr03	irgsp1_rep	CDS	12985080	12985217	.	+	0	Parent=Os03t0347200-02
Chr03	irgsp1_rep	CDS	12985314	12985814	.	+	0	Parent=Os03t0347200-02
Chr03	irgsp1_rep	CDS	12986069	12986368	.	+	0	Parent=Os03t0347200-02
Chr03	irgsp1_rep	CDS	12986470	12986651	.	+	0	Parent=Os03t0347200-02
Chr03	irgsp1_rep	CDS	12987053	12987164	.	+	1	Parent=Os03t0347200-02
Chr03	irgsp1_rep	CDS	12987729	12987848	.	+	0	Parent=Os03t0347200-02
Chr03	irgsp1_rep	three_prime_UTR	12987849	12988055	.	+	.	Parent=Os03t0347200-02
Chr03	irgsp1_rep	mRNA	12985679	12988180	.	+	.	ID=Os03t0347200-03;Name=Os03t0347200-03;Locus_id=Os03g0347200;Note=Similar to Nuclear cap-binding protein CBP80.;Transcript_evidence=AK058460 (DDBJ%2C Best hit);ORF_evidence=Q10LJ0 (UniProt);GO=Biological Process: RNA metabolic process (GO:0016070),Molecular Function: binding (GO:0005488);InterPro=MIF4G-like%2C type 2 (IPR015174),MIF4-like%2C type 1/2/3 (IPR016021),Armadillo-type fold (IPR016024);NIAS_FLcDNA=001-016-A01;Expression=AK058460;TENOR=Os03t0347200-03;KEGG=Os03t0347200-03
Chr03	irgsp1_rep	five_prime_UTR	12985679	12985679	.	+	.	Parent=Os03t0347200-03
Chr03	irgsp1_rep	CDS	12985680	12985814	.	+	0	Parent=Os03t0347200-03
Chr03	irgsp1_rep	CDS	12986069	12986368	.	+	0	Parent=Os03t0347200-03
Chr03	irgsp1_rep	CDS	12986470	12986651	.	+	0	Parent=Os03t0347200-03
Chr03	irgsp1_rep	CDS	12987053	12987164	.	+	1	Parent=Os03t0347200-03
Chr03	irgsp1_rep	CDS	12987729	12987848	.	+	0	Parent=Os03t0347200-03
Chr03	irgsp1_rep	three_prime_UTR	12987849	12988180	.	+	.	Parent=Os03t0347200-03
Chr03	irgsp1_rep	mRNA	12988940	12998660	.	-	.	ID=Os03t0347300-01;Name=Os03t0347300-01;Locus_id=Os03g0347300;CGSNL Gene Symbol=CWZF3;CGSNL Gene Name=CW-DOMAIN CONTAINING ZINC FINGER PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsCW-ZF3%2C CW-ZF3;Oryzabase Gene Name Synonym(s)=cysteine-tryptophan-domain containing zinc finger protein on Chromosome 3%2C CW-domain containing zinc finger protein 3%2C CW-domain containing protein 3;Note=Zinc finger%2C CW-type domain containing protein.;Transcript_evidence=AK062583 (DDBJ%2C Best hit);ORF_evidence=B8APF4 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CW-type (IPR011124);NIAS_FLcDNA=001-100-C12;Oryzabase=21907;TENOR=Os03t0347300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	12998660	12998660	.	-	.	Parent=Os03t0347300-01
Chr03	irgsp1_rep	CDS	12998406	12998659	.	-	0	Parent=Os03t0347300-01
Chr03	irgsp1_rep	CDS	12997591	12998003	.	-	1	Parent=Os03t0347300-01
Chr03	irgsp1_rep	CDS	12996025	12997463	.	-	2	Parent=Os03t0347300-01
Chr03	irgsp1_rep	CDS	12995770	12995930	.	-	0	Parent=Os03t0347300-01
Chr03	irgsp1_rep	CDS	12994108	12994265	.	-	1	Parent=Os03t0347300-01
Chr03	irgsp1_rep	CDS	12991953	12992113	.	-	2	Parent=Os03t0347300-01
Chr03	irgsp1_rep	CDS	12990563	12990760	.	-	0	Parent=Os03t0347300-01
Chr03	irgsp1_rep	three_prime_UTR	12989796	12990562	.	-	.	Parent=Os03t0347300-01
Chr03	irgsp1_rep	three_prime_UTR	12988940	12989096	.	-	.	Parent=Os03t0347300-01
Chr03	irgsp1_rep	mRNA	13000031	13001869	.	+	.	ID=Os03t0347400-00;Name=Os03t0347400-00;Locus_id=Os03g0347400;Note=Non-protein coding transcript.;Transcript_evidence=BT087029 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0347400-00
Chr03	irgsp1_rep	exon	13000031	13000238	.	+	.	Parent=Os03t0347400-00
Chr03	irgsp1_rep	exon	13000317	13000444	.	+	.	Parent=Os03t0347400-00
Chr03	irgsp1_rep	exon	13000528	13000568	.	+	.	Parent=Os03t0347400-00
Chr03	irgsp1_rep	exon	13001716	13001869	.	+	.	Parent=Os03t0347400-00
Chr03	irgsp1_rep	mRNA	13004689	13008130	.	-	.	ID=Os03t0347500-01;Name=Os03t0347500-01;Locus_id=Os03g0347500;CGSNL Gene Symbol=SWEET12;CGSNL Gene Name=SWEET12;Oryzabase Gene Symbol Synonym(s)=OsSWEET12;Note=Similar to Senescence-associated protein (SAG29).;Transcript_evidence=AK109114 (DDBJ%2C Best hit);ORF_evidence=Q10LI8 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=RAG1-activating protein-1-related (IPR004316);NIAS_FLcDNA=002-155-C05;Oryzabase=9103;Expression=AK109114;TENOR=Os03t0347500-01;KEGG=Os03t0347500-01
Chr03	irgsp1_rep	five_prime_UTR	13007973	13008130	.	-	.	Parent=Os03t0347500-01
Chr03	irgsp1_rep	CDS	13007936	13007972	.	-	0	Parent=Os03t0347500-01
Chr03	irgsp1_rep	CDS	13007710	13007746	.	-	2	Parent=Os03t0347500-01
Chr03	irgsp1_rep	CDS	13007190	13007562	.	-	1	Parent=Os03t0347500-01
Chr03	irgsp1_rep	CDS	13006738	13006857	.	-	0	Parent=Os03t0347500-01
Chr03	irgsp1_rep	CDS	13005120	13005455	.	-	0	Parent=Os03t0347500-01
Chr03	irgsp1_rep	three_prime_UTR	13004689	13005119	.	-	.	Parent=Os03t0347500-01
Chr03	irgsp1_rep	mRNA	13024332	13027005	.	-	.	ID=Os03t0347700-01;Name=Os03t0347700-01;Locus_id=Os03g0347700;RAP-DB Gene Symbol Synonym(s)=WIN1;RAP-DB Gene Name Synonym(s)=WINDING 1;CGSNL Gene Symbol=WIN1;CGSNL Gene Name=WINDING 1;Oryzabase Gene Symbol Synonym(s)=BTBN6;Oryzabase Gene Name Synonym(s)=BTBN protein 6;Note=Protein containing a Bric-a-Brac/Tramtrack/Broad (BTB) complex and an NPH3domain (BTBN)%2C Regulation of auxin transport;Transcript_evidence=AK110492;ORF_evidence=Q10LI7;InterPro=SKP1/BTB/POZ domain superfamily (IPR011333),NPH3 domain (IPR027356);NIAS_FLcDNA=002-167-C01;Manual Curation=October 10%2C 2017;Literature_PMID=28922746;Oryzabase=22051;Expression=AK110492;TENOR=Os03t0347700-01;KEGG=Os03t0347700-01;Subcellular location=plasma membrane (GO:0005886)
Chr03	irgsp1_rep	five_prime_UTR	13026850	13027005	.	-	.	Parent=Os03t0347700-01
Chr03	irgsp1_rep	CDS	13026758	13026849	.	-	0	Parent=Os03t0347700-01
Chr03	irgsp1_rep	CDS	13026548	13026614	.	-	1	Parent=Os03t0347700-01
Chr03	irgsp1_rep	CDS	13025197	13026460	.	-	0	Parent=Os03t0347700-01
Chr03	irgsp1_rep	CDS	13024530	13025122	.	-	2	Parent=Os03t0347700-01
Chr03	irgsp1_rep	three_prime_UTR	13024332	13024529	.	-	.	Parent=Os03t0347700-01
Chr03	irgsp1_rep	mRNA	13024539	13025126	.	+	.	ID=Os03t0347750-00;Name=Os03t0347750-00;Locus_id=Os03g0347750;Note=Hypothetical gene.;Transcript_evidence=BT083870 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0347750-00;KEGG=Os03t0347750-00
Chr03	irgsp1_rep	CDS	13024539	13025126	.	+	0	Parent=Os03t0347750-00
Chr03	irgsp1_rep	mRNA	13031243	13036012	.	+	.	ID=Os03t0347800-01;Name=Os03t0347800-01;Locus_id=Os03g0347800;Note=Peptidyl-tRNA hydrolase family protein.;Transcript_evidence=AK073756 (DDBJ%2C Best hit);ORF_evidence=XP_002871908.1 (RefSeq);GO=Molecular Function: aminoacyl-tRNA hydrolase activity (GO:0004045);InterPro=Peptidyl-tRNA hydrolase (IPR001328),Peptidyl-tRNA hydrolase%2C conserved site (IPR018171);NIAS_FLcDNA=J033067M13;Expression=AK073756;TENOR=Os03t0347800-01;KEGG=Os03t0347800-01 (EC:3.1.1.29)
Chr03	irgsp1_rep	five_prime_UTR	13031243	13031622	.	+	.	Parent=Os03t0347800-01
Chr03	irgsp1_rep	CDS	13031623	13031631	.	+	0	Parent=Os03t0347800-01
Chr03	irgsp1_rep	CDS	13031785	13032012	.	+	0	Parent=Os03t0347800-01
Chr03	irgsp1_rep	CDS	13032084	13032168	.	+	0	Parent=Os03t0347800-01
Chr03	irgsp1_rep	CDS	13032291	13032358	.	+	2	Parent=Os03t0347800-01
Chr03	irgsp1_rep	CDS	13032924	13032974	.	+	0	Parent=Os03t0347800-01
Chr03	irgsp1_rep	CDS	13033049	13033168	.	+	0	Parent=Os03t0347800-01
Chr03	irgsp1_rep	three_prime_UTR	13033169	13033586	.	+	.	Parent=Os03t0347800-01
Chr03	irgsp1_rep	three_prime_UTR	13033658	13036012	.	+	.	Parent=Os03t0347800-01
Chr03	irgsp1_rep	mRNA	13035374	13046115	.	-	.	ID=Os03t0347900-01;Name=Os03t0347900-01;Locus_id=Os03g0347900;Note=Terpenoid synthase domain containing protein.;Transcript_evidence=AK065109 (DDBJ%2C Best hit);ORF_evidence=Q5GJ59 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: lyase activity (GO:0016829);InterPro=Terpene synthase-like (IPR001906),Terpene synthase%2C metal-binding domain (IPR005630),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930),Terpenoid synthase (IPR008949);NIAS_FLcDNA=J013001N21;Expression=AK065109;TENOR=Os03t0347900-01;KEGG=Os03t0347900-01
Chr03	irgsp1_rep	five_prime_UTR	13044218	13046115	.	-	.	Parent=Os03t0347900-01
Chr03	irgsp1_rep	five_prime_UTR	13043373	13043395	.	-	.	Parent=Os03t0347900-01
Chr03	irgsp1_rep	CDS	13043141	13043372	.	-	0	Parent=Os03t0347900-01
Chr03	irgsp1_rep	CDS	13042572	13042950	.	-	2	Parent=Os03t0347900-01
Chr03	irgsp1_rep	CDS	13039553	13039771	.	-	1	Parent=Os03t0347900-01
Chr03	irgsp1_rep	CDS	13038990	13039125	.	-	1	Parent=Os03t0347900-01
Chr03	irgsp1_rep	CDS	13036087	13036335	.	-	0	Parent=Os03t0347900-01
Chr03	irgsp1_rep	CDS	13035559	13035852	.	-	0	Parent=Os03t0347900-01
Chr03	irgsp1_rep	three_prime_UTR	13035374	13035558	.	-	.	Parent=Os03t0347900-01
Chr03	irgsp1_rep	mRNA	13038733	13046111	.	-	.	ID=Os03t0347900-02;Name=Os03t0347900-02;Locus_id=Os03g0347900;Note=Terpenoid cylases/protein prenyltransferase alpha-alpha toroid domain containing protein.;Transcript_evidence=AK068923 (DDBJ%2C Best hit);ORF_evidence=Q01L21 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: lyase activity (GO:0016829);InterPro=Terpene synthase-like (IPR001906),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930),Terpenoid synthase (IPR008949);NIAS_FLcDNA=J013170A09;Expression=AK068923;TENOR=Os03t0347900-02;KEGG=Os03t0347900-02
Chr03	irgsp1_rep	five_prime_UTR	13045986	13046111	.	-	.	Parent=Os03t0347900-02
Chr03	irgsp1_rep	five_prime_UTR	13043373	13043398	.	-	.	Parent=Os03t0347900-02
Chr03	irgsp1_rep	CDS	13043141	13043372	.	-	0	Parent=Os03t0347900-02
Chr03	irgsp1_rep	CDS	13042562	13042950	.	-	2	Parent=Os03t0347900-02
Chr03	irgsp1_rep	three_prime_UTR	13041912	13042561	.	-	.	Parent=Os03t0347900-02
Chr03	irgsp1_rep	three_prime_UTR	13039553	13041446	.	-	.	Parent=Os03t0347900-02
Chr03	irgsp1_rep	three_prime_UTR	13038733	13039125	.	-	.	Parent=Os03t0347900-02
Chr03	irgsp1_rep	mRNA	13063312	13070842	.	-	.	ID=Os03t0348200-00;Name=Os03t0348200-00;Locus_id=Os03g0348200;Oryzabase Gene Symbol Synonym(s)=OsTPS10%2C TPS10;Oryzabase Gene Name Synonym(s)=terpene synthase 10;Note=Terpene synthase-like domain containing protein.;Transcript_evidence=EU954571 (DDBJ);ORF_evidence=NP_001050103.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: lyase activity (GO:0016829);InterPro=Terpene synthase-like (IPR001906),Terpene synthase%2C metal-binding domain (IPR005630),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930),Terpenoid synthase (IPR008949);Oryzabase=18707;TENOR=Os03t0348200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	13070706	13070842	.	-	.	Parent=Os03t0348200-00
Chr03	irgsp1_rep	CDS	13070696	13070705	.	-	0	Parent=Os03t0348200-00
Chr03	irgsp1_rep	CDS	13069630	13069881	.	-	2	Parent=Os03t0348200-00
Chr03	irgsp1_rep	CDS	13067350	13067725	.	-	2	Parent=Os03t0348200-00
Chr03	irgsp1_rep	CDS	13066997	13067215	.	-	1	Parent=Os03t0348200-00
Chr03	irgsp1_rep	CDS	13066756	13066891	.	-	1	Parent=Os03t0348200-00
Chr03	irgsp1_rep	CDS	13063833	13064081	.	-	0	Parent=Os03t0348200-00
Chr03	irgsp1_rep	CDS	13063316	13063606	.	-	0	Parent=Os03t0348200-00
Chr03	irgsp1_rep	three_prime_UTR	13063312	13063315	.	-	.	Parent=Os03t0348200-00
Chr03	irgsp1_rep	mRNA	13083595	13086627	.	+	.	ID=Os03t0348500-00;Name=Os03t0348500-00;Locus_id=Os03g0348500;Note=Similar to cDNA clone:J033091L01%2C full insert sequence.;Transcript_evidence=ab initio prediction;ORF_evidence=B7ET23 (UniProt);TENOR=Os03t0348500-00
Chr03	irgsp1_rep	CDS	13083595	13083812	.	+	0	Parent=Os03t0348500-00
Chr03	irgsp1_rep	CDS	13086336	13086627	.	+	1	Parent=Os03t0348500-00
Chr03	irgsp1_rep	mRNA	13087404	13093763	.	-	.	ID=Os03t0348800-01;Name=Os03t0348800-01;Locus_id=Os03g0348800;Note=Conserved hypothetical protein.;Transcript_evidence=AK120281 (DDBJ%2C Best hit);ORF_evidence=B8APF8 (UniProt);NIAS_FLcDNA=J013049I08;TENOR=Os03t0348800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	13093514	13093763	.	-	.	Parent=Os03t0348800-01
Chr03	irgsp1_rep	CDS	13093420	13093513	.	-	0	Parent=Os03t0348800-01
Chr03	irgsp1_rep	CDS	13092515	13092594	.	-	2	Parent=Os03t0348800-01
Chr03	irgsp1_rep	CDS	13092159	13092224	.	-	0	Parent=Os03t0348800-01
Chr03	irgsp1_rep	CDS	13092020	13092067	.	-	0	Parent=Os03t0348800-01
Chr03	irgsp1_rep	CDS	13091858	13091925	.	-	0	Parent=Os03t0348800-01
Chr03	irgsp1_rep	CDS	13091691	13091763	.	-	1	Parent=Os03t0348800-01
Chr03	irgsp1_rep	CDS	13091485	13091538	.	-	0	Parent=Os03t0348800-01
Chr03	irgsp1_rep	three_prime_UTR	13091426	13091484	.	-	.	Parent=Os03t0348800-01
Chr03	irgsp1_rep	three_prime_UTR	13087964	13091127	.	-	.	Parent=Os03t0348800-01
Chr03	irgsp1_rep	three_prime_UTR	13087404	13087801	.	-	.	Parent=Os03t0348800-01
Chr03	irgsp1_rep	mRNA	13090959	13093730	.	-	.	ID=Os03t0348800-02;Name=Os03t0348800-02;Locus_id=Os03g0348800;Note=Similar to Lipase.;Transcript_evidence=AK059731 (DDBJ%2C Best hit);ORF_evidence=B6U116 (UniProt);NIAS_FLcDNA=006-201-G01;Expression=AK059731;TENOR=Os03t0348800-02;KEGG=Os03t0348800-02
Chr03	irgsp1_rep	five_prime_UTR	13093514	13093730	.	-	.	Parent=Os03t0348800-02
Chr03	irgsp1_rep	CDS	13093420	13093513	.	-	0	Parent=Os03t0348800-02
Chr03	irgsp1_rep	CDS	13092515	13092594	.	-	2	Parent=Os03t0348800-02
Chr03	irgsp1_rep	CDS	13092159	13092224	.	-	0	Parent=Os03t0348800-02
Chr03	irgsp1_rep	CDS	13092020	13092067	.	-	0	Parent=Os03t0348800-02
Chr03	irgsp1_rep	CDS	13091858	13091925	.	-	0	Parent=Os03t0348800-02
Chr03	irgsp1_rep	CDS	13091691	13091763	.	-	1	Parent=Os03t0348800-02
Chr03	irgsp1_rep	CDS	13091485	13091538	.	-	0	Parent=Os03t0348800-02
Chr03	irgsp1_rep	three_prime_UTR	13091426	13091484	.	-	.	Parent=Os03t0348800-02
Chr03	irgsp1_rep	three_prime_UTR	13090959	13091127	.	-	.	Parent=Os03t0348800-02
Chr03	irgsp1_rep	mRNA	13095815	13098282	.	-	.	ID=Os03t0348900-01;Name=Os03t0348900-01;Locus_id=Os03g0348900;Oryzabase Gene Symbol Synonym(s)=OsSRFP1%2C SRFP1;Oryzabase Gene Name Synonym(s)=Stress-related RING Finger Protein 1;Note=Similar to CHY zinc finger family protein%2C expressed.;Transcript_evidence=AK073680 (DDBJ%2C Best hit);ORF_evidence=Q10LI0 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C CHY-type (IPR008913),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C CTCHY-type (IPR017921);NIAS_FLcDNA=J033054M17;Oryzabase=19255;Expression=AK073680;TENOR=Os03t0348900-01;KEGG=Os03t0348900-01
Chr03	irgsp1_rep	five_prime_UTR	13098190	13098282	.	-	.	Parent=Os03t0348900-01
Chr03	irgsp1_rep	CDS	13098140	13098189	.	-	0	Parent=Os03t0348900-01
Chr03	irgsp1_rep	CDS	13097928	13098015	.	-	1	Parent=Os03t0348900-01
Chr03	irgsp1_rep	CDS	13097780	13097818	.	-	0	Parent=Os03t0348900-01
Chr03	irgsp1_rep	CDS	13097659	13097691	.	-	0	Parent=Os03t0348900-01
Chr03	irgsp1_rep	CDS	13097499	13097576	.	-	0	Parent=Os03t0348900-01
Chr03	irgsp1_rep	CDS	13097366	13097409	.	-	0	Parent=Os03t0348900-01
Chr03	irgsp1_rep	CDS	13097221	13097261	.	-	1	Parent=Os03t0348900-01
Chr03	irgsp1_rep	CDS	13097013	13097095	.	-	2	Parent=Os03t0348900-01
Chr03	irgsp1_rep	CDS	13096797	13096892	.	-	0	Parent=Os03t0348900-01
Chr03	irgsp1_rep	three_prime_UTR	13096600	13096796	.	-	.	Parent=Os03t0348900-01
Chr03	irgsp1_rep	three_prime_UTR	13096259	13096297	.	-	.	Parent=Os03t0348900-01
Chr03	irgsp1_rep	three_prime_UTR	13095815	13096155	.	-	.	Parent=Os03t0348900-01
Chr03	irgsp1_rep	mRNA	13095799	13098234	.	-	.	ID=Os03t0348900-02;Name=Os03t0348900-02;Locus_id=Os03g0348900;RAP-DB Gene Symbol Synonym(s)=OsSRFP1;RAP-DB Gene Name Synonym(s)=Stress-related RING Finger Protein 1;Oryzabase Gene Symbol Synonym(s)=OsSRFP1%2C SRFP1;Oryzabase Gene Name Synonym(s)=Stress-related RING Finger Protein 1;Note=Ring finger E3 ubiquitin ligase%2C Abiotic stress tolerance;Transcript_evidence=AK059950;ORF_evidence=Q10LI1;GO=Biological Process: protein ubiquitination (GO:0016567),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Ring finger and CHY zinc finger domain-containing protein%2C plant (IPR031109),Zinc finger%2C CHY-type (IPR008913),Zinc finger%2C CTCHY-type (IPR017921),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841),Rubredoxin-type fold (IPR004039);NIAS_FLcDNA=006-211-B01;Manual Curation=June 10%2C 2015;Literature_PMID=25667045;Oryzabase=19255;Expression=AK059950;TENOR=Os03t0348900-02;KEGG=Os03t0348900-02
Chr03	irgsp1_rep	five_prime_UTR	13098190	13098234	.	-	.	Parent=Os03t0348900-02
Chr03	irgsp1_rep	CDS	13098140	13098189	.	-	0	Parent=Os03t0348900-02
Chr03	irgsp1_rep	CDS	13097928	13098015	.	-	1	Parent=Os03t0348900-02
Chr03	irgsp1_rep	CDS	13097780	13097818	.	-	0	Parent=Os03t0348900-02
Chr03	irgsp1_rep	CDS	13097659	13097691	.	-	0	Parent=Os03t0348900-02
Chr03	irgsp1_rep	CDS	13097499	13097576	.	-	0	Parent=Os03t0348900-02
Chr03	irgsp1_rep	CDS	13097366	13097409	.	-	0	Parent=Os03t0348900-02
Chr03	irgsp1_rep	CDS	13097221	13097261	.	-	1	Parent=Os03t0348900-02
Chr03	irgsp1_rep	CDS	13097013	13097095	.	-	2	Parent=Os03t0348900-02
Chr03	irgsp1_rep	CDS	13096801	13096892	.	-	0	Parent=Os03t0348900-02
Chr03	irgsp1_rep	CDS	13096600	13096669	.	-	1	Parent=Os03t0348900-02
Chr03	irgsp1_rep	CDS	13096259	13096297	.	-	0	Parent=Os03t0348900-02
Chr03	irgsp1_rep	CDS	13096030	13096155	.	-	0	Parent=Os03t0348900-02
Chr03	irgsp1_rep	three_prime_UTR	13095799	13096029	.	-	.	Parent=Os03t0348900-02
Chr03	irgsp1_rep	mRNA	13100324	13109340	.	-	.	ID=Os03t0349000-01;Name=Os03t0349000-01;Locus_id=Os03g0349000;Note=Nucleoporin interacting component family protein.;Transcript_evidence=AK099999 (DDBJ%2C Best hit);ORF_evidence=Q2HVW5 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: nuclear pore (GO:0005643);InterPro=Nucleoporin interacting component Nup93/Nic96 (IPR007231);NIAS_FLcDNA=J013134K18;Expression=AK099999;TENOR=Os03t0349000-01;KEGG=Os03t0349000-01
Chr03	irgsp1_rep	five_prime_UTR	13109264	13109340	.	-	.	Parent=Os03t0349000-01
Chr03	irgsp1_rep	CDS	13109135	13109263	.	-	0	Parent=Os03t0349000-01
Chr03	irgsp1_rep	CDS	13108926	13109017	.	-	0	Parent=Os03t0349000-01
Chr03	irgsp1_rep	CDS	13108718	13108784	.	-	1	Parent=Os03t0349000-01
Chr03	irgsp1_rep	CDS	13107665	13107724	.	-	0	Parent=Os03t0349000-01
Chr03	irgsp1_rep	CDS	13107487	13107576	.	-	0	Parent=Os03t0349000-01
Chr03	irgsp1_rep	CDS	13105284	13105553	.	-	0	Parent=Os03t0349000-01
Chr03	irgsp1_rep	CDS	13104940	13105035	.	-	0	Parent=Os03t0349000-01
Chr03	irgsp1_rep	CDS	13104679	13104810	.	-	0	Parent=Os03t0349000-01
Chr03	irgsp1_rep	CDS	13104131	13104184	.	-	0	Parent=Os03t0349000-01
Chr03	irgsp1_rep	CDS	13103917	13104000	.	-	0	Parent=Os03t0349000-01
Chr03	irgsp1_rep	CDS	13103321	13103407	.	-	0	Parent=Os03t0349000-01
Chr03	irgsp1_rep	CDS	13102340	13103242	.	-	0	Parent=Os03t0349000-01
Chr03	irgsp1_rep	CDS	13101872	13102050	.	-	0	Parent=Os03t0349000-01
Chr03	irgsp1_rep	CDS	13101484	13101775	.	-	1	Parent=Os03t0349000-01
Chr03	irgsp1_rep	CDS	13100706	13100783	.	-	0	Parent=Os03t0349000-01
Chr03	irgsp1_rep	three_prime_UTR	13100324	13100705	.	-	.	Parent=Os03t0349000-01
Chr03	irgsp1_rep	mRNA	13110912	13115736	.	-	.	ID=Os03t0349200-01;Name=Os03t0349200-01;Locus_id=Os03g0349200;Oryzabase Gene Symbol Synonym(s)=OsCDKC%3B2%2C OsCDK2;Oryzabase Gene Name Synonym(s)=CYCLIN-DEPENDENT KINASE C%3B2%2C C-type cyclin-dependent kinase 2%2C Cyclin-dependent kinase C-2;Note=Similar to transposon protein.;Transcript_evidence=AK101089 (DDBJ%2C Best hit);ORF_evidence=NP_001148044.1 (RefSeq);NIAS_FLcDNA=J033024L12;Oryzabase=18622;TENOR=Os03t0349200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	13115690	13115736	.	-	.	Parent=Os03t0349200-01
Chr03	irgsp1_rep	CDS	13115297	13115689	.	-	0	Parent=Os03t0349200-01
Chr03	irgsp1_rep	three_prime_UTR	13114976	13115296	.	-	.	Parent=Os03t0349200-01
Chr03	irgsp1_rep	three_prime_UTR	13114565	13114882	.	-	.	Parent=Os03t0349200-01
Chr03	irgsp1_rep	three_prime_UTR	13113666	13113893	.	-	.	Parent=Os03t0349200-01
Chr03	irgsp1_rep	three_prime_UTR	13112911	13113011	.	-	.	Parent=Os03t0349200-01
Chr03	irgsp1_rep	three_prime_UTR	13111883	13111997	.	-	.	Parent=Os03t0349200-01
Chr03	irgsp1_rep	three_prime_UTR	13110912	13111594	.	-	.	Parent=Os03t0349200-01
Chr03	irgsp1_rep	mRNA	13112917	13115460	.	+	.	ID=Os03t0349400-00;Name=Os03t0349400-00;Locus_id=Os03g0349400;Note=Hypothetical protein.;Transcript_evidence=tplb0040h06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0349400-00
Chr03	irgsp1_rep	five_prime_UTR	13112917	13113003	.	+	.	Parent=Os03t0349400-00
Chr03	irgsp1_rep	five_prime_UTR	13113657	13113886	.	+	.	Parent=Os03t0349400-00
Chr03	irgsp1_rep	five_prime_UTR	13114550	13114888	.	+	.	Parent=Os03t0349400-00
Chr03	irgsp1_rep	five_prime_UTR	13114974	13115066	.	+	.	Parent=Os03t0349400-00
Chr03	irgsp1_rep	CDS	13115067	13115246	.	+	0	Parent=Os03t0349400-00
Chr03	irgsp1_rep	CDS	13115324	13115460	.	+	0	Parent=Os03t0349400-00
Chr03	irgsp1_rep	mRNA	13122719	13124496	.	-	.	ID=Os03t0349600-01;Name=Os03t0349600-01;Locus_id=Os03g0349600;Note=Conserved hypothetical protein.;Transcript_evidence=AK105630 (DDBJ%2C Best hit),AK106288 (DDBJ%2C Best hit);ORF_evidence=A2XGN7 (UniProt);NIAS_FLcDNA=001-200-D05,002-101-A12;TENOR=Os03t0349600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	13124316	13124496	.	-	.	Parent=Os03t0349600-01
Chr03	irgsp1_rep	CDS	13124052	13124315	.	-	0	Parent=Os03t0349600-01
Chr03	irgsp1_rep	three_prime_UTR	13122719	13124051	.	-	.	Parent=Os03t0349600-01
Chr03	irgsp1_rep	mRNA	13122682	13124453	.	-	.	ID=Os03t0349600-03;Name=Os03t0349600-03;Locus_id=Os03g0349600;Note=Conserved hypothetical protein.;Transcript_evidence=AK058397 (DDBJ%2C Best hit);ORF_evidence=Q10LH7 (UniProt);NIAS_FLcDNA=001-015-B01;TENOR=Os03t0349600-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	13123567	13124453	.	-	.	Parent=Os03t0349600-03
Chr03	irgsp1_rep	CDS	13123120	13123566	.	-	0	Parent=Os03t0349600-03
Chr03	irgsp1_rep	three_prime_UTR	13122682	13123119	.	-	.	Parent=Os03t0349600-03
Chr03	irgsp1_rep	mRNA	13122845	13123180	.	+	.	ID=Os03t0349700-00;Name=Os03t0349700-00;Locus_id=Os03g0349700;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001050109.1 (RefSeq);TENOR=Os03t0349700-00;KEGG=Os03t0349700-00
Chr03	irgsp1_rep	CDS	13122845	13123180	.	+	0	Parent=Os03t0349700-00
Chr03	irgsp1_rep	mRNA	13126489	13130222	.	-	.	ID=Os03t0350100-01;Name=Os03t0350100-01;Locus_id=Os03g0350100;Oryzabase Gene Symbol Synonym(s)=BIP101;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 101%2C BRI1-interacting protein 101%2C brassinosteroid receptor kinase-interacting protein 101;Note=SAR DNA-binding protein-2.;Transcript_evidence=AK101143 (DDBJ%2C Best hit);ORF_evidence=O80401 (UniProt);InterPro=Pre-mRNA processing ribonucleoprotein%2C snoRNA-binding domain (IPR002687),NOP5%2C N-terminal (IPR012974),NOSIC (IPR012976);NIAS_FLcDNA=J033026N20;Oryzabase=13685;TENOR=Os03t0350100-01
Chr03	irgsp1_rep	five_prime_UTR	13130039	13130222	.	-	.	Parent=Os03t0350100-01
Chr03	irgsp1_rep	five_prime_UTR	13129894	13129921	.	-	.	Parent=Os03t0350100-01
Chr03	irgsp1_rep	CDS	13129816	13129893	.	-	0	Parent=Os03t0350100-01
Chr03	irgsp1_rep	CDS	13129672	13129713	.	-	0	Parent=Os03t0350100-01
Chr03	irgsp1_rep	CDS	13128946	13129125	.	-	0	Parent=Os03t0350100-01
Chr03	irgsp1_rep	CDS	13128708	13128872	.	-	0	Parent=Os03t0350100-01
Chr03	irgsp1_rep	CDS	13128225	13128425	.	-	0	Parent=Os03t0350100-01
Chr03	irgsp1_rep	CDS	13127836	13128135	.	-	0	Parent=Os03t0350100-01
Chr03	irgsp1_rep	CDS	13127298	13127498	.	-	0	Parent=Os03t0350100-01
Chr03	irgsp1_rep	CDS	13127083	13127217	.	-	0	Parent=Os03t0350100-01
Chr03	irgsp1_rep	CDS	13126489	13126855	.	-	0	Parent=Os03t0350100-01
Chr03	irgsp1_rep	mRNA	13126146	13130219	.	-	.	ID=Os03t0350100-02;Name=Os03t0350100-02;Locus_id=Os03g0350100;Oryzabase Gene Symbol Synonym(s)=BIP101;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 101%2C BRI1-interacting protein 101%2C brassinosteroid receptor kinase-interacting protein 101;Note=SAR DNA-binding protein-2.;Transcript_evidence=AK099754 (DDBJ%2C Best hit);ORF_evidence=O80401 (UniProt);InterPro=Pre-mRNA processing ribonucleoprotein%2C snoRNA-binding domain (IPR002687),NOP5%2C N-terminal (IPR012974),NOSIC (IPR012976);NIAS_FLcDNA=J013092O17;Oryzabase=13685;Expression=AK099754;TENOR=Os03t0350100-02;KEGG=Os03t0350100-02
Chr03	irgsp1_rep	five_prime_UTR	13129894	13130219	.	-	.	Parent=Os03t0350100-02
Chr03	irgsp1_rep	CDS	13129816	13129893	.	-	0	Parent=Os03t0350100-02
Chr03	irgsp1_rep	CDS	13129672	13129713	.	-	0	Parent=Os03t0350100-02
Chr03	irgsp1_rep	CDS	13128946	13129125	.	-	0	Parent=Os03t0350100-02
Chr03	irgsp1_rep	CDS	13128708	13128872	.	-	0	Parent=Os03t0350100-02
Chr03	irgsp1_rep	CDS	13128225	13128425	.	-	0	Parent=Os03t0350100-02
Chr03	irgsp1_rep	CDS	13127836	13128135	.	-	0	Parent=Os03t0350100-02
Chr03	irgsp1_rep	CDS	13127298	13127498	.	-	0	Parent=Os03t0350100-02
Chr03	irgsp1_rep	CDS	13127083	13127217	.	-	0	Parent=Os03t0350100-02
Chr03	irgsp1_rep	CDS	13126451	13126855	.	-	0	Parent=Os03t0350100-02
Chr03	irgsp1_rep	three_prime_UTR	13126146	13126450	.	-	.	Parent=Os03t0350100-02
Chr03	irgsp1_rep	mRNA	13133569	13137486	.	-	.	ID=Os03t0350300-01;Name=Os03t0350300-01;Locus_id=Os03g0350300;Oryzabase Gene Symbol Synonym(s)=BIP102;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 102%2C BRI1-interacting protein 102%2C brassinosteroid receptor kinase-interacting protein 102;Note=Similar to SAR DNA-binding protein-like protein.;Transcript_evidence=AK073164 (DDBJ%2C Best hit);ORF_evidence=O80401 (UniProt);InterPro=Pre-mRNA processing ribonucleoprotein%2C snoRNA-binding domain (IPR002687),NOP5%2C N-terminal (IPR012974),NOSIC (IPR012976);NIAS_FLcDNA=J033023B01;Oryzabase=13686;TENOR=Os03t0350300-01;KEGG=Os03t0350300-01
Chr03	irgsp1_rep	five_prime_UTR	13137315	13137486	.	-	.	Parent=Os03t0350300-01
Chr03	irgsp1_rep	five_prime_UTR	13137181	13137208	.	-	.	Parent=Os03t0350300-01
Chr03	irgsp1_rep	CDS	13137103	13137180	.	-	0	Parent=Os03t0350300-01
Chr03	irgsp1_rep	CDS	13136947	13136988	.	-	0	Parent=Os03t0350300-01
Chr03	irgsp1_rep	CDS	13136260	13136439	.	-	0	Parent=Os03t0350300-01
Chr03	irgsp1_rep	CDS	13136022	13136186	.	-	0	Parent=Os03t0350300-01
Chr03	irgsp1_rep	CDS	13135540	13135740	.	-	0	Parent=Os03t0350300-01
Chr03	irgsp1_rep	CDS	13135150	13135449	.	-	0	Parent=Os03t0350300-01
Chr03	irgsp1_rep	CDS	13134709	13134909	.	-	0	Parent=Os03t0350300-01
Chr03	irgsp1_rep	CDS	13134492	13134626	.	-	0	Parent=Os03t0350300-01
Chr03	irgsp1_rep	CDS	13133806	13134210	.	-	0	Parent=Os03t0350300-01
Chr03	irgsp1_rep	three_prime_UTR	13133569	13133805	.	-	.	Parent=Os03t0350300-01
Chr03	irgsp1_rep	mRNA	13153018	13155544	.	+	.	ID=Os03t0351100-01;Name=Os03t0351100-01;Locus_id=Os03g0351100;Oryzabase Gene Symbol Synonym(s)=OsP%2C OsBBX9%2C OsCCT12%2C BBX9%2C CCT12;Oryzabase Gene Name Synonym(s)=CONSTANS-like gene P%2C B-box-containing protein 9%2C CCT domain-containing gene 12%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 12%2C CCT domain protein 12;Note=Similar to CONSTANS-like protein CO9 (Fragment).;Transcript_evidence=AK101822 (DDBJ%2C Best hit);ORF_evidence=C0PI33 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C B-box (IPR000315),CCT domain (IPR010402);NIAS_FLcDNA=J033067J11;Oryzabase=10312;Expression=AK101822;TENOR=Os03t0351100-01;KEGG=Os03t0351100-01
Chr03	irgsp1_rep	five_prime_UTR	13153018	13153173	.	+	.	Parent=Os03t0351100-01
Chr03	irgsp1_rep	CDS	13153174	13153770	.	+	0	Parent=Os03t0351100-01
Chr03	irgsp1_rep	CDS	13153892	13154122	.	+	0	Parent=Os03t0351100-01
Chr03	irgsp1_rep	CDS	13154769	13155058	.	+	0	Parent=Os03t0351100-01
Chr03	irgsp1_rep	CDS	13155181	13155274	.	+	1	Parent=Os03t0351100-01
Chr03	irgsp1_rep	three_prime_UTR	13155275	13155544	.	+	.	Parent=Os03t0351100-01
Chr03	irgsp1_rep	mRNA	13153048	13155506	.	+	.	ID=Os03t0351100-02;Name=Os03t0351100-02;Locus_id=Os03g0351100;Oryzabase Gene Symbol Synonym(s)=OsP%2C OsBBX9%2C OsCCT12%2C BBX9%2C CCT12;Oryzabase Gene Name Synonym(s)=CONSTANS-like gene P%2C B-box-containing protein 9%2C CCT domain-containing gene 12%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 12%2C CCT domain protein 12;Note=Similar to CONSTANS-like protein CO9 (Fragment).;Transcript_evidence=AK099864 (DDBJ%2C Best hit);ORF_evidence=C0PI33 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C B-box (IPR000315),CCT domain (IPR010402);NIAS_FLcDNA=J013111C11;Oryzabase=10312;Expression=AK099864;TENOR=Os03t0351100-02;KEGG=Os03t0351100-02
Chr03	irgsp1_rep	five_prime_UTR	13153048	13153173	.	+	.	Parent=Os03t0351100-02
Chr03	irgsp1_rep	CDS	13153174	13153770	.	+	0	Parent=Os03t0351100-02
Chr03	irgsp1_rep	CDS	13153892	13154122	.	+	0	Parent=Os03t0351100-02
Chr03	irgsp1_rep	CDS	13154769	13155058	.	+	0	Parent=Os03t0351100-02
Chr03	irgsp1_rep	CDS	13155181	13155274	.	+	1	Parent=Os03t0351100-02
Chr03	irgsp1_rep	three_prime_UTR	13155275	13155506	.	+	.	Parent=Os03t0351100-02
Chr03	irgsp1_rep	mRNA	13155851	13157256	.	-	.	ID=Os03t0351200-00;Name=Os03t0351200-00;Locus_id=Os03g0351200;CGSNL Gene Symbol=DVR;CGSNL Gene Name=DIVINYL REDUCTASE;Oryzabase Gene Symbol Synonym(s)=OsDVR;Oryzabase Gene Name Synonym(s)=Divinyl reductase%2C "3%2C 8-divinyl protochlorophyllide a 8-vinyl reductase";Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK353935 (DDBJ);ORF_evidence=D5L1S4 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NmrA-like (IPR008030),NAD(P)-binding domain (IPR016040);Oryzabase=11661;TENOR=Os03t0351200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	13157245	13157256	.	-	.	Parent=Os03t0351200-00
Chr03	irgsp1_rep	CDS	13156027	13157244	.	-	0	Parent=Os03t0351200-00
Chr03	irgsp1_rep	three_prime_UTR	13155996	13156026	.	-	.	Parent=Os03t0351200-00
Chr03	irgsp1_rep	three_prime_UTR	13155851	13155933	.	-	.	Parent=Os03t0351200-00
Chr03	irgsp1_rep	mRNA	13162037	13163727	.	+	.	ID=Os03t0351300-00;Name=Os03t0351300-00;Locus_id=Os03g0351300;Oryzabase Gene Name Synonym(s)=beta-amylase;Note=Similar to beta-amylase.;Transcript_evidence=BT041352 (DDBJ);ORF_evidence=NP_001151271.1 (RefSeq);GO=Biological Process: polysaccharide catabolic process (GO:0000272),Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: beta-amylase activity (GO:0016161),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 14 (IPR001554),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);Oryzabase=21709;TENOR=Os03t0351300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	13162037	13162747	.	+	0	Parent=Os03t0351300-00
Chr03	irgsp1_rep	CDS	13162828	13163691	.	+	0	Parent=Os03t0351300-00
Chr03	irgsp1_rep	three_prime_UTR	13163692	13163727	.	+	.	Parent=Os03t0351300-00
Chr03	irgsp1_rep	mRNA	13164567	13167540	.	-	.	ID=Os03t0351400-01;Name=Os03t0351400-01;Locus_id=Os03g0351400;Oryzabase Gene Symbol Synonym(s)=OsTLP14%2C OsTLP6%2C OsFbox139%2C Os_F0681;Oryzabase Gene Name Synonym(s)=tubby-like protein 14%2C tubby-like protein 6%2C F-box protein 139;Note=Similar to Tubby-like protein 3.;Transcript_evidence=AK102370 (DDBJ%2C Best hit);ORF_evidence=Q10LG8 (UniProt);InterPro=Tubby%2C C-terminal (IPR000007),Tubby%2C C-terminal%2C conserved site (IPR018066);NIAS_FLcDNA=J033091L01;Oryzabase=14715;Expression=AK102370;TENOR=Os03t0351400-01;KEGG=Os03t0351400-01
Chr03	irgsp1_rep	five_prime_UTR	13167539	13167540	.	-	.	Parent=Os03t0351400-01
Chr03	irgsp1_rep	CDS	13167427	13167538	.	-	0	Parent=Os03t0351400-01
Chr03	irgsp1_rep	CDS	13167198	13167327	.	-	2	Parent=Os03t0351400-01
Chr03	irgsp1_rep	CDS	13166647	13166826	.	-	1	Parent=Os03t0351400-01
Chr03	irgsp1_rep	CDS	13165775	13166243	.	-	1	Parent=Os03t0351400-01
Chr03	irgsp1_rep	three_prime_UTR	13164567	13165774	.	-	.	Parent=Os03t0351400-01
Chr03	irgsp1_rep	mRNA	13181396	13184453	.	+	.	ID=Os03t0351500-01;Name=Os03t0351500-01;Locus_id=Os03g0351500;RAP-DB Gene Symbol Synonym(s)=CSD1;RAP-DB Gene Name Synonym(s)=Cu/Zn-Superoxidase Dismutase1;CGSNL Gene Symbol=SODCC1;CGSNL Gene Name=CYTOSOLIC SUPEROXIDASE DISMUTASE;Oryzabase Gene Symbol Synonym(s)=sodCc1%2C SODCC.1%2C sodA%2C RSODA%2C OsSOD1%2C OsCSD2%2C OsSodA%2C SodCc2%2C OsSODA1%2C SODCc1-Cu/Zn%2C OsCu/Zn-SOD2%2C Cu/Zn-SOD2%2C OsCSD1.2%2C CSD1.2%2C OsSODCc1-Cu/Zn%2C SODCc1-Cu/Zn%2C CuZnSOD1%2C Cu/ZnSOD1;Oryzabase Gene Name Synonym(s)=cytosolic superoxidase dismutase%2C Superoxide dismutase [Cu-Zn] 1%2C Cytosolic Cu/Zn-siperoxide dismutase%2C rice Cu/Zn-SOD%2C Cu/Zn-SOD%2C Cytosolic Copper/Zinc-Superoxide Dismutase 1%2C "Superoxide dismutase (Cu-Zn) 4%2C cytosolic"%2C Cu-dependent SOD 1.2;Note=Cu/Zn-Superoxidase Dismutase%2C Target of miR398b%2C Resistance to rice blast disease;Transcript_evidence=AK061662,AK120692;ORF_evidence=Q0DRV6;GO=Biological Process: superoxide metabolic process (GO:0006801),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: superoxide dismutase activity (GO:0004784),Molecular Function: metal ion binding (GO:0046872);InterPro=Superoxide dismutase-like%2C copper/zinc binding domain superfamily (IPR036423),Superoxide dismutase%2C copper/zinc binding domain (IPR001424),Superoxide dismutase%2C copper/zinc%2C binding site (IPR018152);NIAS_FLcDNA=001-036-E04,J013169L20;Manual Curation=February 18%2C 2019;Literature_PMID=30632163,1623183;Oryzabase=6431;Expression=AK061662;TENOR=Os03t0351500-01;KEGG=Os03t0351500-01 (EC:1.15.1.1)
Chr03	irgsp1_rep	five_prime_UTR	13181396	13181485	.	+	.	Parent=Os03t0351500-01
Chr03	irgsp1_rep	five_prime_UTR	13182567	13182578	.	+	.	Parent=Os03t0351500-01
Chr03	irgsp1_rep	CDS	13182579	13182654	.	+	0	Parent=Os03t0351500-01
Chr03	irgsp1_rep	CDS	13182747	13182848	.	+	2	Parent=Os03t0351500-01
Chr03	irgsp1_rep	CDS	13182973	13183068	.	+	2	Parent=Os03t0351500-01
Chr03	irgsp1_rep	CDS	13183323	13183354	.	+	2	Parent=Os03t0351500-01
Chr03	irgsp1_rep	CDS	13183503	13183578	.	+	0	Parent=Os03t0351500-01
Chr03	irgsp1_rep	CDS	13184040	13184093	.	+	2	Parent=Os03t0351500-01
Chr03	irgsp1_rep	CDS	13184207	13184229	.	+	2	Parent=Os03t0351500-01
Chr03	irgsp1_rep	three_prime_UTR	13184230	13184453	.	+	.	Parent=Os03t0351500-01
Chr03	irgsp1_rep	mRNA	13189478	13190315	.	+	.	ID=Os03t0351700-01;Name=Os03t0351700-01;Locus_id=Os03g0351700;Note=Conserved hypothetical protein.;Transcript_evidence=AK108549 (DDBJ%2C Best hit);ORF_evidence=A2XGP7 (UniProt);NIAS_FLcDNA=002-144-E02;Expression=AK108549;TENOR=Os03t0351700-01;KEGG=Os03t0351700-01
Chr03	irgsp1_rep	five_prime_UTR	13189478	13189547	.	+	.	Parent=Os03t0351700-01
Chr03	irgsp1_rep	CDS	13189548	13190087	.	+	0	Parent=Os03t0351700-01
Chr03	irgsp1_rep	three_prime_UTR	13190088	13190315	.	+	.	Parent=Os03t0351700-01
Chr03	irgsp1_rep	mRNA	13199226	13201310	.	-	.	ID=Os03t0351800-01;Name=Os03t0351800-01;Locus_id=Os03g0351800;Oryzabase Gene Symbol Synonym(s)=OsRFP;Oryzabase Gene Name Synonym(s)=RING finger protein;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK070491 (DDBJ%2C Best hit);ORF_evidence=B6TI63 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J023049J20;Oryzabase=21151;Expression=AK070491;TENOR=Os03t0351800-01;KEGG=Os03t0351800-01 (EC:6.3.2.19)
Chr03	irgsp1_rep	five_prime_UTR	13201173	13201310	.	-	.	Parent=Os03t0351800-01
Chr03	irgsp1_rep	five_prime_UTR	13200258	13200316	.	-	.	Parent=Os03t0351800-01
Chr03	irgsp1_rep	CDS	13199406	13200257	.	-	0	Parent=Os03t0351800-01
Chr03	irgsp1_rep	three_prime_UTR	13199226	13199405	.	-	.	Parent=Os03t0351800-01
Chr03	irgsp1_rep	mRNA	13218051	13222166	.	+	.	ID=Os03t0352200-01;Name=Os03t0352200-01;Locus_id=Os03g0352200;Note=Similar to SAC3/GANP family protein.;Transcript_evidence=AK065347 (DDBJ%2C Best hit);ORF_evidence=XP_002877974.1 (RefSeq);NIAS_FLcDNA=J013006B16;TENOR=Os03t0352200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	13218051	13218124	.	+	.	Parent=Os03t0352200-01
Chr03	irgsp1_rep	CDS	13218125	13218368	.	+	0	Parent=Os03t0352200-01
Chr03	irgsp1_rep	CDS	13218558	13218844	.	+	2	Parent=Os03t0352200-01
Chr03	irgsp1_rep	three_prime_UTR	13218845	13219936	.	+	.	Parent=Os03t0352200-01
Chr03	irgsp1_rep	three_prime_UTR	13220488	13220709	.	+	.	Parent=Os03t0352200-01
Chr03	irgsp1_rep	three_prime_UTR	13220828	13220913	.	+	.	Parent=Os03t0352200-01
Chr03	irgsp1_rep	three_prime_UTR	13221106	13221202	.	+	.	Parent=Os03t0352200-01
Chr03	irgsp1_rep	three_prime_UTR	13221593	13221685	.	+	.	Parent=Os03t0352200-01
Chr03	irgsp1_rep	three_prime_UTR	13221807	13222166	.	+	.	Parent=Os03t0352200-01
Chr03	irgsp1_rep	mRNA	13222688	13225476	.	-	.	ID=Os03t0352300-01;Name=Os03t0352300-01;Locus_id=Os03g0352300;Note=Similar to Nucleolar protein.;Transcript_evidence=AK069305 (DDBJ%2C Best hit);ORF_evidence=B6TNS0 (UniProt);InterPro=Pre-mRNA processing ribonucleoprotein%2C snoRNA-binding domain (IPR002687),NOP5%2C N-terminal (IPR012974),NOSIC (IPR012976);NIAS_FLcDNA=J023012D01;Expression=AK069305;TENOR=Os03t0352300-01;KEGG=Os03t0352300-01
Chr03	irgsp1_rep	five_prime_UTR	13225391	13225476	.	-	.	Parent=Os03t0352300-01
Chr03	irgsp1_rep	CDS	13225186	13225390	.	-	0	Parent=Os03t0352300-01
Chr03	irgsp1_rep	CDS	13224869	13225083	.	-	2	Parent=Os03t0352300-01
Chr03	irgsp1_rep	CDS	13224460	13224617	.	-	0	Parent=Os03t0352300-01
Chr03	irgsp1_rep	CDS	13224058	13224245	.	-	1	Parent=Os03t0352300-01
Chr03	irgsp1_rep	CDS	13223708	13223960	.	-	2	Parent=Os03t0352300-01
Chr03	irgsp1_rep	CDS	13223437	13223585	.	-	1	Parent=Os03t0352300-01
Chr03	irgsp1_rep	CDS	13223197	13223349	.	-	2	Parent=Os03t0352300-01
Chr03	irgsp1_rep	CDS	13222778	13223115	.	-	2	Parent=Os03t0352300-01
Chr03	irgsp1_rep	three_prime_UTR	13222688	13222777	.	-	.	Parent=Os03t0352300-01
Chr03	irgsp1_rep	mRNA	13222543	13223741	.	-	.	ID=Os03t0352300-02;Name=Os03t0352300-02;Locus_id=Os03g0352300;Note=Similar to nucleolar protein Nop56.;Transcript_evidence=AK059432 (DDBJ%2C Best hit);ORF_evidence=B6TNS0 (UniProt);InterPro=Pre-mRNA processing ribonucleoprotein%2C snoRNA-binding domain (IPR002687);NIAS_FLcDNA=001-027-F04;Expression=AK059432;TENOR=Os03t0352300-02;KEGG=Os03t0352300-02
Chr03	irgsp1_rep	five_prime_UTR	13223740	13223741	.	-	.	Parent=Os03t0352300-02
Chr03	irgsp1_rep	CDS	13223708	13223739	.	-	0	Parent=Os03t0352300-02
Chr03	irgsp1_rep	CDS	13223437	13223585	.	-	1	Parent=Os03t0352300-02
Chr03	irgsp1_rep	CDS	13223197	13223349	.	-	2	Parent=Os03t0352300-02
Chr03	irgsp1_rep	CDS	13222778	13223115	.	-	2	Parent=Os03t0352300-02
Chr03	irgsp1_rep	three_prime_UTR	13222543	13222777	.	-	.	Parent=Os03t0352300-02
Chr03	irgsp1_rep	mRNA	13222651	13223116	.	-	.	ID=Os03t0352300-03;Name=Os03t0352300-03;Locus_id=Os03g0352300;Note=Similar to nucleolar protein Nop56.;Transcript_evidence=AK059026 (DDBJ%2C Best hit);ORF_evidence=B6TNS0 (UniProt);NIAS_FLcDNA=001-021-B10;Expression=AK059026;TENOR=Os03t0352300-03;KEGG=Os03t0352300-03
Chr03	irgsp1_rep	CDS	13222778	13223116	.	-	0	Parent=Os03t0352300-03
Chr03	irgsp1_rep	three_prime_UTR	13222651	13222777	.	-	.	Parent=Os03t0352300-03
Chr03	irgsp1_rep	mRNA	13227322	13232070	.	+	.	ID=Os03t0352400-01;Name=Os03t0352400-01;Locus_id=Os03g0352400;RAP-DB Gene Symbol Synonym(s)=OsNug2;RAP-DB Gene Name Synonym(s)=nuclear/nucleolar GTPase 2;Oryzabase Gene Symbol Synonym(s)=OsNug2;Oryzabase Gene Name Synonym(s)=Nuclear/Nucleolar GTPase 2;Note=Nuclear/nucleolar GTPase 2%2C Pre-60S ribosomal subunit maturation;Transcript_evidence=AK105418,AK103394,AK119231;ORF_evidence=Q10LF7;GO=Molecular Function: GTP binding (GO:0005525);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),GTP-binding protein%2C orthogonal bundle domain superfamily (IPR023179),Nucleolar GTP-binding protein 2%2C N-terminal domain (IPR012971),Circularly permuted (CP)-type guanine nucleotide-binding (G) domain (IPR030378),GTP binding domain (IPR006073);NIAS_FLcDNA=001-124-A10,J033127M16,001-114-E03;Manual Curation=September 24%2C 2020;Literature_PMID=21205822;Oryzabase=18219;TENOR=Os03t0352400-01;Subcellular location=nucleolus (GO:0005730),nucleus (GO:0005634)
Chr03	irgsp1_rep	five_prime_UTR	13227322	13227416	.	+	.	Parent=Os03t0352400-01
Chr03	irgsp1_rep	CDS	13227417	13227675	.	+	0	Parent=Os03t0352400-01
Chr03	irgsp1_rep	CDS	13228247	13228380	.	+	2	Parent=Os03t0352400-01
Chr03	irgsp1_rep	CDS	13228581	13228710	.	+	0	Parent=Os03t0352400-01
Chr03	irgsp1_rep	CDS	13229066	13229226	.	+	2	Parent=Os03t0352400-01
Chr03	irgsp1_rep	CDS	13229363	13229464	.	+	0	Parent=Os03t0352400-01
Chr03	irgsp1_rep	CDS	13229562	13229666	.	+	0	Parent=Os03t0352400-01
Chr03	irgsp1_rep	CDS	13229741	13229869	.	+	0	Parent=Os03t0352400-01
Chr03	irgsp1_rep	CDS	13229956	13230096	.	+	0	Parent=Os03t0352400-01
Chr03	irgsp1_rep	CDS	13230631	13230731	.	+	0	Parent=Os03t0352400-01
Chr03	irgsp1_rep	CDS	13231076	13231133	.	+	1	Parent=Os03t0352400-01
Chr03	irgsp1_rep	CDS	13231432	13231719	.	+	0	Parent=Os03t0352400-01
Chr03	irgsp1_rep	three_prime_UTR	13231720	13232070	.	+	.	Parent=Os03t0352400-01
Chr03	irgsp1_rep	mRNA	13236683	13247880	.	+	.	ID=Os03t0352500-01;Name=Os03t0352500-01;Locus_id=Os03g0352500;RAP-DB Gene Symbol Synonym(s)=OsINO80;Oryzabase Gene Symbol Synonym(s)=OsINO80%2C INO80;Note=Chromatin-remodeling factor%2C Regulation of gibberellin biosynthesis%2C Plant growth and development;Transcript_evidence=AK062300 (truncated),Inferred from literature;ORF_evidence=Q10LF6;GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP binding (GO:0005524);InterPro=SNF2-like%2C N-terminal domain superfamily (IPR038718),P-loop containing nucleoside triphosphate hydrolase (IPR027417),DBINO domain (IPR020838),Helicase superfamily 1/2%2C ATP-binding domain (IPR014001),SNF2-related%2C N-terminal domain (IPR000330),Helicase%2C C-terminal (IPR001650);NIAS_FLcDNA=001-100-G12;Manual Curation=November 6%2C 2019;Literature_PMID=29045007;Oryzabase=22104;Expression=AK062300;TENOR=Os03t0352500-01;KEGG=Os03t0352500-01 (EC:3.6.1.-);B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=nucleus (GO:0005634)
Chr03	irgsp1_rep	CDS	13236683	13236766	.	+	0	Parent=Os03t0352500-01
Chr03	irgsp1_rep	CDS	13237972	13238056	.	+	0	Parent=Os03t0352500-01
Chr03	irgsp1_rep	CDS	13238178	13238962	.	+	2	Parent=Os03t0352500-01
Chr03	irgsp1_rep	CDS	13239038	13239238	.	+	0	Parent=Os03t0352500-01
Chr03	irgsp1_rep	CDS	13239356	13239466	.	+	0	Parent=Os03t0352500-01
Chr03	irgsp1_rep	CDS	13239881	13240263	.	+	0	Parent=Os03t0352500-01
Chr03	irgsp1_rep	CDS	13240370	13240478	.	+	1	Parent=Os03t0352500-01
Chr03	irgsp1_rep	CDS	13240562	13240642	.	+	0	Parent=Os03t0352500-01
Chr03	irgsp1_rep	CDS	13240864	13240932	.	+	0	Parent=Os03t0352500-01
Chr03	irgsp1_rep	CDS	13241155	13241243	.	+	0	Parent=Os03t0352500-01
Chr03	irgsp1_rep	CDS	13241395	13241556	.	+	1	Parent=Os03t0352500-01
Chr03	irgsp1_rep	CDS	13241635	13241692	.	+	1	Parent=Os03t0352500-01
Chr03	irgsp1_rep	CDS	13241919	13242149	.	+	0	Parent=Os03t0352500-01
Chr03	irgsp1_rep	CDS	13242292	13242438	.	+	0	Parent=Os03t0352500-01
Chr03	irgsp1_rep	CDS	13242555	13243109	.	+	0	Parent=Os03t0352500-01
Chr03	irgsp1_rep	CDS	13243338	13243595	.	+	0	Parent=Os03t0352500-01
Chr03	irgsp1_rep	CDS	13243872	13243979	.	+	0	Parent=Os03t0352500-01
Chr03	irgsp1_rep	CDS	13244536	13244630	.	+	0	Parent=Os03t0352500-01
Chr03	irgsp1_rep	CDS	13244722	13244878	.	+	1	Parent=Os03t0352500-01
Chr03	irgsp1_rep	CDS	13245242	13245442	.	+	0	Parent=Os03t0352500-01
Chr03	irgsp1_rep	CDS	13246318	13246446	.	+	0	Parent=Os03t0352500-01
Chr03	irgsp1_rep	CDS	13247068	13247343	.	+	0	Parent=Os03t0352500-01
Chr03	irgsp1_rep	three_prime_UTR	13247344	13247880	.	+	.	Parent=Os03t0352500-01
Chr03	irgsp1_rep	mRNA	13256889	13258448	.	+	.	ID=Os03t0352700-00;Name=Os03t0352700-00;Locus_id=Os03g0352700;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10LF2 (UniProt);TENOR=Os03t0352700-00;KEGG=Os03t0352700-00
Chr03	irgsp1_rep	CDS	13256889	13257733	.	+	0	Parent=Os03t0352700-00
Chr03	irgsp1_rep	CDS	13258277	13258448	.	+	1	Parent=Os03t0352700-00
Chr03	irgsp1_rep	mRNA	13258254	13260638	.	-	.	ID=Os03t0352800-01;Name=Os03t0352800-01;Locus_id=Os03g0352800;Note=Similar to Acyl carrier protein 1 (EC 1.6.5.3) (EC 1.6.99.3).;Transcript_evidence=AK059673 (DDBJ%2C Best hit);ORF_evidence=A2XGQ6 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Molecular Function: acyl carrier activity (GO:0000036),Molecular Function: phosphopantetheine binding (GO:0031177),Molecular Function: cofactor binding (GO:0048037);InterPro=Acyl carrier protein (ACP) (IPR003231),Phosphopantetheine attachment site (IPR006162),Phosphopantetheine-binding (IPR006163),Acyl carrier protein-like (IPR009081),Polyketide synthase%2C phosphopantetheine-binding (IPR020806);NIAS_FLcDNA=001-031-G02;Expression=AK059673;TENOR=Os03t0352800-01;KEGG=Os03t0352800-01 (EC:1.6.5.3%2C EC:1.6.99.3)
Chr03	irgsp1_rep	five_prime_UTR	13260525	13260638	.	-	.	Parent=Os03t0352800-01
Chr03	irgsp1_rep	CDS	13260294	13260524	.	-	0	Parent=Os03t0352800-01
Chr03	irgsp1_rep	CDS	13258493	13258669	.	-	0	Parent=Os03t0352800-01
Chr03	irgsp1_rep	three_prime_UTR	13258254	13258492	.	-	.	Parent=Os03t0352800-01
Chr03	irgsp1_rep	mRNA	13263190	13264444	.	+	.	ID=Os03t0353000-01;Name=Os03t0353000-01;Locus_id=Os03g0353000;Note=Conserved hypothetical protein.;Transcript_evidence=AK242282 (DDBJ%2C Best hit);ORF_evidence=NP_001173417.1 (RefSeq);NIAS_FLcDNA=J075189E02;TENOR=Os03t0353000-01;KEGG=Os03t0353000-01
Chr03	irgsp1_rep	five_prime_UTR	13263190	13263211	.	+	.	Parent=Os03t0353000-01
Chr03	irgsp1_rep	CDS	13263212	13263505	.	+	0	Parent=Os03t0353000-01
Chr03	irgsp1_rep	CDS	13264077	13264199	.	+	0	Parent=Os03t0353000-01
Chr03	irgsp1_rep	three_prime_UTR	13264200	13264444	.	+	.	Parent=Os03t0353000-01
Chr03	irgsp1_rep	mRNA	13273396	13275250	.	+	.	ID=Os03t0353300-01;Name=Os03t0353300-01;Locus_id=Os03g0353300;Oryzabase Gene Symbol Synonym(s)=Os_F0699;Note=Similar to F-box domain containing protein%2C expressed.;Transcript_evidence=AK111467 (DDBJ%2C Best hit);ORF_evidence=Q10LE7 (UniProt);NIAS_FLcDNA=002-183-D08;Oryzabase=17443;TENOR=Os03t0353300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	13273396	13273396	.	+	.	Parent=Os03t0353300-01
Chr03	irgsp1_rep	CDS	13273397	13273978	.	+	0	Parent=Os03t0353300-01
Chr03	irgsp1_rep	CDS	13274123	13274269	.	+	0	Parent=Os03t0353300-01
Chr03	irgsp1_rep	CDS	13274548	13274907	.	+	0	Parent=Os03t0353300-01
Chr03	irgsp1_rep	three_prime_UTR	13274908	13275250	.	+	.	Parent=Os03t0353300-01
Chr03	irgsp1_rep	mRNA	13276176	13276550	.	-	.	ID=Os03t0353333-00;Name=Os03t0353333-00;Locus_id=Os03g0353333;Note=Similar to Acyl carrier protein.;Transcript_evidence=EU960579 (DDBJ);ORF_evidence=A2XGQ6 (UniProt);TENOR=Os03t0353333-00;KEGG=Os03t0353333-00 (EC:1.6.5.3%2C EC:1.6.99.3)
Chr03	irgsp1_rep	five_prime_UTR	13276413	13276550	.	-	.	Parent=Os03t0353333-00
Chr03	irgsp1_rep	CDS	13276176	13276412	.	-	0	Parent=Os03t0353333-00
Chr03	irgsp1_rep	mRNA	13283192	13284513	.	+	.	ID=Os03t0353400-01;Name=Os03t0353400-01;Locus_id=Os03g0353400;Oryzabase Gene Name Synonym(s)=Arabidopsis thaliana ERD15 protein homolog;Note=Similar to Poly(A)-binding protein C-terminal interacting protein 6.;Transcript_evidence=AK062176 (DDBJ%2C Best hit);ORF_evidence=B6SL93 (UniProt);NIAS_FLcDNA=001-046-D01;Oryzabase=16045;Expression=AK062176;TENOR=Os03t0353400-01;KEGG=Os03t0353400-01
Chr03	irgsp1_rep	five_prime_UTR	13283192	13283304	.	+	.	Parent=Os03t0353400-01
Chr03	irgsp1_rep	five_prime_UTR	13283525	13283540	.	+	.	Parent=Os03t0353400-01
Chr03	irgsp1_rep	CDS	13283541	13283868	.	+	0	Parent=Os03t0353400-01
Chr03	irgsp1_rep	CDS	13283977	13284131	.	+	2	Parent=Os03t0353400-01
Chr03	irgsp1_rep	three_prime_UTR	13284132	13284513	.	+	.	Parent=Os03t0353400-01
Chr03	irgsp1_rep	mRNA	13283223	13284511	.	+	.	ID=Os03t0353400-02;Name=Os03t0353400-02;Locus_id=Os03g0353400;Oryzabase Gene Name Synonym(s)=Arabidopsis thaliana ERD15 protein homolog;Note=Similar to Early response to dehydration 15-like protein.;Transcript_evidence=AK068753 (DDBJ%2C Best hit);ORF_evidence=Q7XXS2 (UniProt);NIAS_FLcDNA=J013158E09;Oryzabase=16045;Expression=AK068753;TENOR=Os03t0353400-02;KEGG=Os03t0353400-02
Chr03	irgsp1_rep	five_prime_UTR	13283223	13283540	.	+	.	Parent=Os03t0353400-02
Chr03	irgsp1_rep	CDS	13283541	13283879	.	+	0	Parent=Os03t0353400-02
Chr03	irgsp1_rep	three_prime_UTR	13283880	13284511	.	+	.	Parent=Os03t0353400-02
Chr03	irgsp1_rep	mRNA	13289325	13291461	.	+	.	ID=Os03t0353500-01;Name=Os03t0353500-01;Locus_id=Os03g0353500;Note=Nucleolar protein 12 domain containing protein.;Transcript_evidence=AK099434 (DDBJ%2C Best hit);ORF_evidence=A2XGR2 (UniProt);InterPro=Nucleolar protein 12 (IPR019186);NIAS_FLcDNA=J013014L03;Expression=AK099434;TENOR=Os03t0353500-01;KEGG=Os03t0353500-01
Chr03	irgsp1_rep	five_prime_UTR	13289325	13289422	.	+	.	Parent=Os03t0353500-01
Chr03	irgsp1_rep	CDS	13289423	13289610	.	+	0	Parent=Os03t0353500-01
Chr03	irgsp1_rep	CDS	13289741	13289846	.	+	1	Parent=Os03t0353500-01
Chr03	irgsp1_rep	CDS	13290828	13290945	.	+	0	Parent=Os03t0353500-01
Chr03	irgsp1_rep	CDS	13291047	13291315	.	+	2	Parent=Os03t0353500-01
Chr03	irgsp1_rep	three_prime_UTR	13291316	13291461	.	+	.	Parent=Os03t0353500-01
Chr03	irgsp1_rep	mRNA	13301955	13305637	.	+	.	ID=Os03t0353600-01;Name=Os03t0353600-01;Locus_id=Os03g0353600;Oryzabase Gene Symbol Synonym(s)=OsSTA99;Note=Similar to Aberrant pollen transmission 1.;Transcript_evidence=AK240701 (DDBJ%2C Best hit);ORF_evidence=Q4JQG0 (UniProt);InterPro=FMP27%2C  C-terminal (IPR019443);NIAS_FLcDNA=J043016A02;Oryzabase=19307;TENOR=Os03t0353600-01
Chr03	irgsp1_rep	five_prime_UTR	13301955	13301956	.	+	.	Parent=Os03t0353600-01
Chr03	irgsp1_rep	CDS	13301957	13302680	.	+	0	Parent=Os03t0353600-01
Chr03	irgsp1_rep	CDS	13302889	13302992	.	+	2	Parent=Os03t0353600-01
Chr03	irgsp1_rep	CDS	13303528	13303884	.	+	0	Parent=Os03t0353600-01
Chr03	irgsp1_rep	CDS	13303986	13304104	.	+	0	Parent=Os03t0353600-01
Chr03	irgsp1_rep	CDS	13304951	13305212	.	+	1	Parent=Os03t0353600-01
Chr03	irgsp1_rep	CDS	13305445	13305637	.	+	0	Parent=Os03t0353600-01
Chr03	irgsp1_rep	mRNA	13308292	13309708	.	+	.	ID=Os03t0353701-01;Name=Os03t0353701-01;Locus_id=Os03g0353701;Note=Similar to aberrant pollen transmission 1.;Transcript_evidence=AK242536 (DDBJ%2C Best hit);ORF_evidence=NP_001106066.1 (RefSeq);NIAS_FLcDNA=J080316M18;TENOR=Os03t0353701-01;KEGG=Os03t0353701-01
Chr03	irgsp1_rep	CDS	13308292	13308676	.	+	0	Parent=Os03t0353701-01
Chr03	irgsp1_rep	CDS	13309216	13309334	.	+	2	Parent=Os03t0353701-01
Chr03	irgsp1_rep	three_prime_UTR	13309335	13309708	.	+	.	Parent=Os03t0353701-01
Chr03	irgsp1_rep	mRNA	13319928	13326828	.	+	.	ID=Os03t0353900-01;Name=Os03t0353900-01;Locus_id=Os03g0353900;Note=Argonaute and Dicer protein%2C PAZ domain containing protein.;Transcript_evidence=AK073188 (DDBJ%2C Best hit);ORF_evidence=B8APS6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Argonaute/Dicer protein%2C PAZ (IPR003100),Domain of unknown function DUF1785 (IPR014811);NIAS_FLcDNA=J033003M11;Expression=AK073188;TENOR=Os03t0353900-01;KEGG=Os03t0353900-01
Chr03	irgsp1_rep	five_prime_UTR	13319928	13320618	.	+	.	Parent=Os03t0353900-01
Chr03	irgsp1_rep	CDS	13320619	13320863	.	+	0	Parent=Os03t0353900-01
Chr03	irgsp1_rep	CDS	13320950	13321099	.	+	1	Parent=Os03t0353900-01
Chr03	irgsp1_rep	CDS	13321188	13321321	.	+	1	Parent=Os03t0353900-01
Chr03	irgsp1_rep	CDS	13321619	13321725	.	+	2	Parent=Os03t0353900-01
Chr03	irgsp1_rep	CDS	13321807	13321913	.	+	0	Parent=Os03t0353900-01
Chr03	irgsp1_rep	CDS	13322357	13322462	.	+	1	Parent=Os03t0353900-01
Chr03	irgsp1_rep	CDS	13322874	13322993	.	+	0	Parent=Os03t0353900-01
Chr03	irgsp1_rep	CDS	13323094	13323250	.	+	0	Parent=Os03t0353900-01
Chr03	irgsp1_rep	CDS	13323939	13324030	.	+	2	Parent=Os03t0353900-01
Chr03	irgsp1_rep	CDS	13324114	13324358	.	+	0	Parent=Os03t0353900-01
Chr03	irgsp1_rep	CDS	13324444	13325233	.	+	1	Parent=Os03t0353900-01
Chr03	irgsp1_rep	CDS	13325317	13325574	.	+	0	Parent=Os03t0353900-01
Chr03	irgsp1_rep	three_prime_UTR	13325575	13325575	.	+	.	Parent=Os03t0353900-01
Chr03	irgsp1_rep	three_prime_UTR	13326398	13326828	.	+	.	Parent=Os03t0353900-01
Chr03	irgsp1_rep	mRNA	13469343	13475314	.	+	.	ID=Os03t0354500-01;Name=Os03t0354500-01;Locus_id=Os03g0354500;Note=Domain of unknown function DUF834 domain containing protein.;Transcript_evidence=AK288355 (DDBJ%2C Best hit);ORF_evidence=longestORF;InterPro=Domain of unknown function DUF834 (IPR008552);NIAS_FLcDNA=J090024I05;TENOR=Os03t0354500-01
Chr03	irgsp1_rep	five_prime_UTR	13469343	13472620	.	+	.	Parent=Os03t0354500-01
Chr03	irgsp1_rep	CDS	13472621	13472926	.	+	0	Parent=Os03t0354500-01
Chr03	irgsp1_rep	three_prime_UTR	13472927	13475314	.	+	.	Parent=Os03t0354500-01
Chr03	irgsp1_rep	mRNA	13565398	13567689	.	-	.	ID=Os03t0355100-01;Name=Os03t0355100-01;Locus_id=Os03g0355100;Note=Protein of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK071025 (DDBJ%2C Best hit),AK060982 (DDBJ%2C Best hit);ORF_evidence=A3AI05 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=J023075M21,006-203-A11;TENOR=Os03t0355100-01
Chr03	irgsp1_rep	five_prime_UTR	13567606	13567689	.	-	.	Parent=Os03t0355100-01
Chr03	irgsp1_rep	CDS	13566187	13567605	.	-	0	Parent=Os03t0355100-01
Chr03	irgsp1_rep	three_prime_UTR	13566172	13566186	.	-	.	Parent=Os03t0355100-01
Chr03	irgsp1_rep	three_prime_UTR	13565398	13565676	.	-	.	Parent=Os03t0355100-01
Chr03	irgsp1_rep	mRNA	13570909	13574657	.	+	.	ID=Os03t0355200-00;Name=Os03t0355200-00;Locus_id=Os03g0355200;Oryzabase Gene Symbol Synonym(s)=OsWD40-72;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=BT055024 (DDBJ);ORF_evidence=NP_181681.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),Pre-mRNA processing factor 4 (PRP4)-like (IPR014906),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);Oryzabase=10753;TENOR=Os03t0355200-00;KEGG=Os03t0355200-00
Chr03	irgsp1_rep	five_prime_UTR	13570909	13571002	.	+	.	Parent=Os03t0355200-00
Chr03	irgsp1_rep	CDS	13571003	13571748	.	+	0	Parent=Os03t0355200-00
Chr03	irgsp1_rep	CDS	13572885	13573338	.	+	1	Parent=Os03t0355200-00
Chr03	irgsp1_rep	CDS	13573499	13573696	.	+	0	Parent=Os03t0355200-00
Chr03	irgsp1_rep	CDS	13573774	13573855	.	+	0	Parent=Os03t0355200-00
Chr03	irgsp1_rep	CDS	13574544	13574638	.	+	2	Parent=Os03t0355200-00
Chr03	irgsp1_rep	three_prime_UTR	13574639	13574657	.	+	.	Parent=Os03t0355200-00
Chr03	irgsp1_rep	mRNA	13574903	13577311	.	-	.	ID=Os03t0355300-01;Name=Os03t0355300-01;Locus_id=Os03g0355300;Oryzabase Gene Symbol Synonym(s)=OsWD40-71;Note=Protein of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK066464 (DDBJ%2C Best hit);ORF_evidence=A2XGR9 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=J013067N02;Oryzabase=10752;Expression=AK066464;TENOR=Os03t0355300-01;KEGG=Os03t0355300-01
Chr03	irgsp1_rep	five_prime_UTR	13577234	13577311	.	-	.	Parent=Os03t0355300-01
Chr03	irgsp1_rep	CDS	13575806	13577233	.	-	0	Parent=Os03t0355300-01
Chr03	irgsp1_rep	three_prime_UTR	13574903	13575805	.	-	.	Parent=Os03t0355300-01
Chr03	irgsp1_rep	mRNA	13580537	13584285	.	+	.	ID=Os03t0355400-00;Name=Os03t0355400-00;Locus_id=Os03g0355400;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=BT055024 (DDBJ);ORF_evidence=NP_181681.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),Pre-mRNA processing factor 4 (PRP4)-like (IPR014906),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);TENOR=Os03t0355400-00;KEGG=Os03t0355400-00
Chr03	irgsp1_rep	five_prime_UTR	13580537	13580630	.	+	.	Parent=Os03t0355400-00
Chr03	irgsp1_rep	CDS	13580631	13581376	.	+	0	Parent=Os03t0355400-00
Chr03	irgsp1_rep	CDS	13582513	13582966	.	+	1	Parent=Os03t0355400-00
Chr03	irgsp1_rep	CDS	13583127	13583324	.	+	0	Parent=Os03t0355400-00
Chr03	irgsp1_rep	CDS	13583402	13583483	.	+	0	Parent=Os03t0355400-00
Chr03	irgsp1_rep	CDS	13584172	13584266	.	+	2	Parent=Os03t0355400-00
Chr03	irgsp1_rep	three_prime_UTR	13584267	13584285	.	+	.	Parent=Os03t0355400-00
Chr03	irgsp1_rep	mRNA	13585245	13586204	.	+	.	ID=Os03t0355500-00;Name=Os03t0355500-00;Locus_id=Os03g0355500;Oryzabase Gene Symbol Synonym(s)=OsSTA100;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3AI07 (UniProt);Oryzabase=19393;TENOR=Os03t0355500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	13585245	13586204	.	+	0	Parent=Os03t0355500-00
Chr03	irgsp1_rep	mRNA	13586838	13592878	.	-	.	ID=Os03t0355600-01;Name=Os03t0355600-01;Locus_id=Os03g0355600;Note=Similar to Adapter-related protein complex 2 beta 1 subunit (Beta-adaptin) (Plasma membrane adaptor HA2/AP2 adaptin beta subunit) (Clathrin assembly protein complex 2 beta large chain) (AP105B) (Fragment).;Transcript_evidence=AK068938 (DDBJ%2C Best hit);ORF_evidence=Q9SUS3 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: protein transport (GO:0015031),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: membrane coat (GO:0030117),Cellular Component: clathrin adaptor complex (GO:0030131),Molecular Function: binding (GO:0005488),Molecular Function: protein transporter activity (GO:0008565);InterPro=Clathrin/coatomer adaptor%2C adaptin-like%2C N-terminal (IPR002553),Clathrin adaptor%2C alpha/beta/gamma-adaptin%2C appendage%2C Ig-like subdomain (IPR008152),Coatomer/calthrin adaptor appendage%2C C-terminal subdomain (IPR009028),Armadillo-like helical (IPR011989),Beta2-adaptin/TATA-box binding%2C C-terminal (IPR012295),Clathrin adaptor%2C beta-adaptin%2C appendage%2C Ig-like subdomain (IPR013037),Coatomer/clathrin adaptor appendage%2C Ig-like subdomain (IPR013041),Clathrin adaptor%2C beta-adaptin%2C appendage%2C C-terminal subdomain (IPR015151),Armadillo-type fold (IPR016024),Adaptor protein complex%2C beta subunit (IPR016342);NIAS_FLcDNA=J013169D19;Expression=AK068938;TENOR=Os03t0355600-01;KEGG=Os03t0355600-01
Chr03	irgsp1_rep	CDS	13592801	13592878	.	-	0	Parent=Os03t0355600-01
Chr03	irgsp1_rep	CDS	13591471	13591668	.	-	0	Parent=Os03t0355600-01
Chr03	irgsp1_rep	CDS	13591233	13591346	.	-	0	Parent=Os03t0355600-01
Chr03	irgsp1_rep	CDS	13590893	13591143	.	-	0	Parent=Os03t0355600-01
Chr03	irgsp1_rep	CDS	13590670	13590805	.	-	1	Parent=Os03t0355600-01
Chr03	irgsp1_rep	CDS	13590097	13590276	.	-	0	Parent=Os03t0355600-01
Chr03	irgsp1_rep	CDS	13589920	13590012	.	-	0	Parent=Os03t0355600-01
Chr03	irgsp1_rep	CDS	13589437	13589648	.	-	0	Parent=Os03t0355600-01
Chr03	irgsp1_rep	CDS	13589249	13589312	.	-	1	Parent=Os03t0355600-01
Chr03	irgsp1_rep	CDS	13588998	13589177	.	-	0	Parent=Os03t0355600-01
Chr03	irgsp1_rep	CDS	13588608	13588700	.	-	0	Parent=Os03t0355600-01
Chr03	irgsp1_rep	CDS	13588127	13588518	.	-	0	Parent=Os03t0355600-01
Chr03	irgsp1_rep	CDS	13587820	13588009	.	-	1	Parent=Os03t0355600-01
Chr03	irgsp1_rep	CDS	13587532	13587735	.	-	0	Parent=Os03t0355600-01
Chr03	irgsp1_rep	CDS	13587102	13587398	.	-	0	Parent=Os03t0355600-01
Chr03	irgsp1_rep	three_prime_UTR	13586838	13587101	.	-	.	Parent=Os03t0355600-01
Chr03	irgsp1_rep	mRNA	13586930	13590014	.	-	.	ID=Os03t0355600-02;Name=Os03t0355600-02;Locus_id=Os03g0355600;Note=Similar to predicted protein.;Transcript_evidence=AK071247 (DDBJ%2C Best hit);ORF_evidence=Q9SUS3 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: membrane coat (GO:0030117),Cellular Component: clathrin adaptor complex (GO:0030131),Molecular Function: binding (GO:0005488);InterPro=Clathrin/coatomer adaptor%2C adaptin-like%2C N-terminal (IPR002553),Clathrin adaptor%2C alpha/beta/gamma-adaptin%2C appendage%2C Ig-like subdomain (IPR008152),Coatomer/calthrin adaptor appendage%2C C-terminal subdomain (IPR009028),Armadillo-like helical (IPR011989),Beta2-adaptin/TATA-box binding%2C C-terminal (IPR012295),Clathrin adaptor%2C beta-adaptin%2C appendage%2C Ig-like subdomain (IPR013037),Coatomer/clathrin adaptor appendage%2C Ig-like subdomain (IPR013041),Clathrin adaptor%2C beta-adaptin%2C appendage%2C C-terminal subdomain (IPR015151),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023087B10;Expression=AK071247;TENOR=Os03t0355600-02;KEGG=Os03t0355600-02
Chr03	irgsp1_rep	five_prime_UTR	13590013	13590014	.	-	.	Parent=Os03t0355600-02
Chr03	irgsp1_rep	CDS	13589920	13590012	.	-	0	Parent=Os03t0355600-02
Chr03	irgsp1_rep	CDS	13589437	13589648	.	-	0	Parent=Os03t0355600-02
Chr03	irgsp1_rep	CDS	13589249	13589312	.	-	1	Parent=Os03t0355600-02
Chr03	irgsp1_rep	CDS	13588998	13589177	.	-	0	Parent=Os03t0355600-02
Chr03	irgsp1_rep	CDS	13588608	13588700	.	-	0	Parent=Os03t0355600-02
Chr03	irgsp1_rep	CDS	13588127	13588518	.	-	0	Parent=Os03t0355600-02
Chr03	irgsp1_rep	CDS	13587820	13588009	.	-	1	Parent=Os03t0355600-02
Chr03	irgsp1_rep	CDS	13587532	13587735	.	-	0	Parent=Os03t0355600-02
Chr03	irgsp1_rep	CDS	13587102	13587398	.	-	0	Parent=Os03t0355600-02
Chr03	irgsp1_rep	three_prime_UTR	13586930	13587101	.	-	.	Parent=Os03t0355600-02
Chr03	irgsp1_rep	mRNA	13586742	13589496	.	-	.	ID=Os03t0355600-03;Name=Os03t0355600-03;Locus_id=Os03g0355600;Note=Similar to predicted protein.;Transcript_evidence=AK069084 (DDBJ%2C Best hit);ORF_evidence=Q9SUS3 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: membrane coat (GO:0030117),Cellular Component: clathrin adaptor complex (GO:0030131),Molecular Function: binding (GO:0005488);InterPro=Clathrin/coatomer adaptor%2C adaptin-like%2C N-terminal (IPR002553),Clathrin adaptor%2C alpha/beta/gamma-adaptin%2C appendage%2C Ig-like subdomain (IPR008152),Coatomer/calthrin adaptor appendage%2C C-terminal subdomain (IPR009028),Armadillo-like helical (IPR011989),Beta2-adaptin/TATA-box binding%2C C-terminal (IPR012295),Clathrin adaptor%2C beta-adaptin%2C appendage%2C Ig-like subdomain (IPR013037),Coatomer/clathrin adaptor appendage%2C Ig-like subdomain (IPR013041),Clathrin adaptor%2C beta-adaptin%2C appendage%2C C-terminal subdomain (IPR015151),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023007F10;Expression=AK069084;TENOR=Os03t0355600-03;KEGG=Os03t0355600-03
Chr03	irgsp1_rep	five_prime_UTR	13589496	13589496	.	-	.	Parent=Os03t0355600-03
Chr03	irgsp1_rep	CDS	13589437	13589495	.	-	0	Parent=Os03t0355600-03
Chr03	irgsp1_rep	CDS	13589249	13589312	.	-	1	Parent=Os03t0355600-03
Chr03	irgsp1_rep	CDS	13588998	13589177	.	-	0	Parent=Os03t0355600-03
Chr03	irgsp1_rep	CDS	13588608	13588700	.	-	0	Parent=Os03t0355600-03
Chr03	irgsp1_rep	CDS	13588127	13588518	.	-	0	Parent=Os03t0355600-03
Chr03	irgsp1_rep	CDS	13587820	13588009	.	-	1	Parent=Os03t0355600-03
Chr03	irgsp1_rep	CDS	13587532	13587735	.	-	0	Parent=Os03t0355600-03
Chr03	irgsp1_rep	CDS	13587102	13587398	.	-	0	Parent=Os03t0355600-03
Chr03	irgsp1_rep	three_prime_UTR	13586742	13587101	.	-	.	Parent=Os03t0355600-03
Chr03	irgsp1_rep	mRNA	13586816	13587866	.	-	.	ID=Os03t0355600-04;Name=Os03t0355600-04;Locus_id=Os03g0355600;Note=Similar to predicted protein.;Transcript_evidence=AK059077 (DDBJ%2C Best hit);ORF_evidence=Q9SUS3 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: membrane coat (GO:0030117),Cellular Component: clathrin adaptor complex (GO:0030131),Molecular Function: binding (GO:0005488);InterPro=Coatomer/calthrin adaptor appendage%2C C-terminal subdomain (IPR009028),Beta2-adaptin/TATA-box binding%2C C-terminal (IPR012295),Clathrin adaptor%2C beta-adaptin%2C appendage%2C Ig-like subdomain (IPR013037),Coatomer/clathrin adaptor appendage%2C Ig-like subdomain (IPR013041),Clathrin adaptor%2C beta-adaptin%2C appendage%2C C-terminal subdomain (IPR015151);NIAS_FLcDNA=001-022-A07;Expression=AK059077;TENOR=Os03t0355600-04;KEGG=Os03t0355600-04
Chr03	irgsp1_rep	five_prime_UTR	13587865	13587866	.	-	.	Parent=Os03t0355600-04
Chr03	irgsp1_rep	CDS	13587820	13587864	.	-	0	Parent=Os03t0355600-04
Chr03	irgsp1_rep	CDS	13587532	13587735	.	-	0	Parent=Os03t0355600-04
Chr03	irgsp1_rep	CDS	13587102	13587398	.	-	0	Parent=Os03t0355600-04
Chr03	irgsp1_rep	three_prime_UTR	13586816	13587101	.	-	.	Parent=Os03t0355600-04
Chr03	irgsp1_rep	mRNA	13603026	13605298	.	+	.	ID=Os03t0355700-00;Name=Os03t0355700-00;Locus_id=Os03g0355700;Note=Hypothetical conserved gene.;Transcript_evidence=BT018850 (DDBJ);ORF_evidence=NP_001050136.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);TENOR=Os03t0355700-00;KEGG=Os03t0355700-00
Chr03	irgsp1_rep	CDS	13603026	13603361	.	+	0	Parent=Os03t0355700-00
Chr03	irgsp1_rep	CDS	13603557	13603820	.	+	0	Parent=Os03t0355700-00
Chr03	irgsp1_rep	CDS	13604339	13604470	.	+	0	Parent=Os03t0355700-00
Chr03	irgsp1_rep	CDS	13604599	13604804	.	+	0	Parent=Os03t0355700-00
Chr03	irgsp1_rep	CDS	13604880	13605297	.	+	1	Parent=Os03t0355700-00
Chr03	irgsp1_rep	three_prime_UTR	13605298	13605298	.	+	.	Parent=Os03t0355700-00
Chr03	irgsp1_rep	mRNA	13605600	13608086	.	-	.	ID=Os03t0355800-01;Name=Os03t0355800-01;Locus_id=Os03g0355800;Note=Similar to Diphthine synthase (EC 2.1.1.98) (Diphthamide biosynthesis methyltransferase).;Transcript_evidence=AK103902 (DDBJ%2C Best hit);ORF_evidence=B8APT0 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: peptidyl-diphthamide biosynthetic process from peptidyl-histidine (GO:0017183),Molecular Function: diphthine synthase activity (GO:0004164),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Tetrapyrrole methylase (IPR000878),Diphthine synthase (IPR004551),Tetrapyrrole methylase%2C subdomain 2 (IPR014776),Tetrapyrrole methylase%2C subdomain 1 (IPR014777);NIAS_FLcDNA=J033150L03;Expression=AK103902;TENOR=Os03t0355800-01;KEGG=Os03t0355800-01 (EC:2.1.1.98)
Chr03	irgsp1_rep	five_prime_UTR	13607969	13608086	.	-	.	Parent=Os03t0355800-01
Chr03	irgsp1_rep	CDS	13607819	13607968	.	-	0	Parent=Os03t0355800-01
Chr03	irgsp1_rep	CDS	13607583	13607707	.	-	0	Parent=Os03t0355800-01
Chr03	irgsp1_rep	CDS	13607255	13607484	.	-	1	Parent=Os03t0355800-01
Chr03	irgsp1_rep	CDS	13606720	13606759	.	-	2	Parent=Os03t0355800-01
Chr03	irgsp1_rep	CDS	13606404	13606495	.	-	1	Parent=Os03t0355800-01
Chr03	irgsp1_rep	CDS	13605993	13606180	.	-	2	Parent=Os03t0355800-01
Chr03	irgsp1_rep	three_prime_UTR	13605974	13605992	.	-	.	Parent=Os03t0355800-01
Chr03	irgsp1_rep	three_prime_UTR	13605600	13605833	.	-	.	Parent=Os03t0355800-01
Chr03	irgsp1_rep	mRNA	13605595	13608029	.	-	.	ID=Os03t0355800-02;Name=Os03t0355800-02;Locus_id=Os03g0355800;Note=Similar to Diphthine synthase (EC 2.1.1.98) (Diphthamide biosynthesis methyltransferase).;Transcript_evidence=AK069271 (DDBJ%2C Best hit);ORF_evidence=B8APT0 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: peptidyl-diphthamide biosynthetic process from peptidyl-histidine (GO:0017183),Molecular Function: diphthine synthase activity (GO:0004164),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Tetrapyrrole methylase (IPR000878),Diphthine synthase (IPR004551),Tetrapyrrole methylase%2C subdomain 2 (IPR014776),Tetrapyrrole methylase%2C subdomain 1 (IPR014777);NIAS_FLcDNA=J023016I01;TENOR=Os03t0355800-02
Chr03	irgsp1_rep	five_prime_UTR	13607969	13608029	.	-	.	Parent=Os03t0355800-02
Chr03	irgsp1_rep	CDS	13607819	13607968	.	-	0	Parent=Os03t0355800-02
Chr03	irgsp1_rep	CDS	13607583	13607707	.	-	0	Parent=Os03t0355800-02
Chr03	irgsp1_rep	CDS	13607255	13607484	.	-	1	Parent=Os03t0355800-02
Chr03	irgsp1_rep	CDS	13606720	13606759	.	-	2	Parent=Os03t0355800-02
Chr03	irgsp1_rep	CDS	13606404	13606495	.	-	1	Parent=Os03t0355800-02
Chr03	irgsp1_rep	CDS	13605993	13606180	.	-	2	Parent=Os03t0355800-02
Chr03	irgsp1_rep	three_prime_UTR	13605974	13605992	.	-	.	Parent=Os03t0355800-02
Chr03	irgsp1_rep	three_prime_UTR	13605595	13605833	.	-	.	Parent=Os03t0355800-02
Chr03	irgsp1_rep	mRNA	13608897	13609145	.	-	.	ID=Os03t0355900-00;Name=Os03t0355900-00;Locus_id=Os03g0355900;Oryzabase Gene Name Synonym(s)=NAD dependent epimerase/dehydratase family protein;Note=Hypothetical conserved gene.;Transcript_evidence=CT835254 (DDBJ%2C Best hit);ORF_evidence=NP_001050138.1 (RefSeq);Oryzabase=21860;TENOR=Os03t0355900-00;KEGG=Os03t0355900-00
Chr03	irgsp1_rep	five_prime_UTR	13609144	13609145	.	-	.	Parent=Os03t0355900-00
Chr03	irgsp1_rep	CDS	13609084	13609143	.	-	0	Parent=Os03t0355900-00
Chr03	irgsp1_rep	three_prime_UTR	13608897	13609083	.	-	.	Parent=Os03t0355900-00
Chr03	irgsp1_rep	mRNA	13627581	13630305	.	-	.	ID=Os03t0356300-01;Name=Os03t0356300-01;Locus_id=Os03g0356300;Note=Ribosomal protein L6 family protein.;Transcript_evidence=AK061469 (DDBJ%2C Best hit),AK099034 (DDBJ%2C Best hit);ORF_evidence=NP_001148555.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735),Molecular Function: rRNA binding (GO:0019843);InterPro=Ribosomal protein L6 (IPR000702),Ribosomal protein L6%2C conserved site (IPR002358),Ribosomal protein L6%2C bacterial-type (IPR019906),Ribosomal protein L6%2C alpha-beta domain (IPR020040);NIAS_FLcDNA=006-308-D06,J013135I03;TENOR=Os03t0356300-01
Chr03	irgsp1_rep	five_prime_UTR	13630236	13630305	.	-	.	Parent=Os03t0356300-01
Chr03	irgsp1_rep	CDS	13630201	13630235	.	-	0	Parent=Os03t0356300-01
Chr03	irgsp1_rep	CDS	13628942	13629250	.	-	1	Parent=Os03t0356300-01
Chr03	irgsp1_rep	CDS	13627829	13628165	.	-	1	Parent=Os03t0356300-01
Chr03	irgsp1_rep	three_prime_UTR	13627581	13627828	.	-	.	Parent=Os03t0356300-01
Chr03	irgsp1_rep	mRNA	13631395	13632372	.	+	.	ID=Os03t0356400-01;Name=Os03t0356400-01;Locus_id=Os03g0356400;Oryzabase Gene Symbol Synonym(s)=OsGRL6;Oryzabase Gene Name Synonym(s)=GRX-like protein 6%2C glutaredoxin-like protein 6;Note=Thioredoxin fold domain containing protein.;Transcript_evidence=AK287959 (DDBJ%2C Best hit);ORF_evidence=NP_001150724.1 (RefSeq);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin (IPR002109),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=J075055L07;Oryzabase=13596;TENOR=Os03t0356400-01;KEGG=Os03t0356400-01
Chr03	irgsp1_rep	five_prime_UTR	13631395	13631455	.	+	.	Parent=Os03t0356400-01
Chr03	irgsp1_rep	CDS	13631456	13632067	.	+	0	Parent=Os03t0356400-01
Chr03	irgsp1_rep	three_prime_UTR	13632068	13632372	.	+	.	Parent=Os03t0356400-01
Chr03	irgsp1_rep	mRNA	13633732	13637491	.	-	.	ID=Os03t0356414-01;Name=Os03t0356414-01;Locus_id=Os03g0356414;RAP-DB Gene Symbol Synonym(s)=OsDIS1;RAP-DB Gene Name Synonym(s)=drought-induced SINA protein 1;Oryzabase Gene Symbol Synonym(s)=OsDIS1;Oryzabase Gene Name Synonym(s)=drought-induced SINA protein 1%2C drought induced seven in absentia (SINA) protein 1%2C drought induced seven in absentia protein 1;Note=C3HC4 RING finger E3 ligase%2C SINA type E3 ligase%2C Negative regulation of drought stress tolerance;Transcript_evidence=AK058336;ORF_evidence=Q10L91;GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Biological Process: multicellular organism development (GO:0007275),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Cellular Component: nucleus (GO:0005634);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),TRAF-like (IPR008974),Zinc finger%2C RING-type (IPR001841),Seven-in-absentia protein%2C TRAF-like domain (IPR018121),Zinc finger%2C SIAH-type (IPR013010);NIAS_FLcDNA=001-014-D03;Manual Curation=August 6%2C 2020;Literature_PMID=22067990,21719639;Oryzabase=9920;TENOR=Os03t0356414-01;KEGG=Os03t0356414-01 (EC:2.3.2.27);Subcellular location=nucleus (GO:0005634) [mainly], cytoplasm (GO:0005737), plasma membrane (GO:0005886)
Chr03	irgsp1_rep	five_prime_UTR	13637293	13637491	.	-	.	Parent=Os03t0356414-01
Chr03	irgsp1_rep	five_prime_UTR	13635813	13635838	.	-	.	Parent=Os03t0356414-01
Chr03	irgsp1_rep	CDS	13635615	13635812	.	-	0	Parent=Os03t0356414-01
Chr03	irgsp1_rep	CDS	13634876	13635262	.	-	0	Parent=Os03t0356414-01
Chr03	irgsp1_rep	CDS	13634091	13634411	.	-	0	Parent=Os03t0356414-01
Chr03	irgsp1_rep	three_prime_UTR	13633732	13634090	.	-	.	Parent=Os03t0356414-01
Chr03	irgsp1_rep	mRNA	13653018	13655290	.	-	.	ID=Os03t0356470-00;Name=Os03t0356470-00;Locus_id=Os03g0356470;Note=Hypothetical conserved gene.;Transcript_evidence=AK363376 (DDBJ);ORF_evidence=NP_001173421.1 (RefSeq);TENOR=Os03t0356470-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	13655094	13655290	.	-	0	Parent=Os03t0356470-00
Chr03	irgsp1_rep	CDS	13654793	13654907	.	-	1	Parent=Os03t0356470-00
Chr03	irgsp1_rep	CDS	13654473	13654676	.	-	0	Parent=Os03t0356470-00
Chr03	irgsp1_rep	CDS	13654196	13654330	.	-	0	Parent=Os03t0356470-00
Chr03	irgsp1_rep	three_prime_UTR	13654097	13654195	.	-	.	Parent=Os03t0356470-00
Chr03	irgsp1_rep	three_prime_UTR	13653965	13654041	.	-	.	Parent=Os03t0356470-00
Chr03	irgsp1_rep	three_prime_UTR	13653018	13653214	.	-	.	Parent=Os03t0356470-00
Chr03	irgsp1_rep	mRNA	13655747	13656392	.	-	.	ID=Os03t0356477-00;Name=Os03t0356477-00;Locus_id=Os03g0356477;Note=Non-protein coding transcript.;Transcript_evidence=CT835250 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os03t0356477-00
Chr03	irgsp1_rep	exon	13655747	13656392	.	-	.	Parent=Os03t0356477-00
Chr03	irgsp1_rep	mRNA	13659659	13662772	.	-	.	ID=Os03t0356484-01;Name=Os03t0356484-01;Locus_id=Os03g0356484;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK105146 (DDBJ%2C Best hit);ORF_evidence=NP_001150606.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide TPR2 (IPR013105),Tetratricopeptide repeat 11 Fission 1 protein (IPR016543);NIAS_FLcDNA=001-103-B12;TENOR=Os03t0356484-01;KEGG=Os03t0356484-01
Chr03	irgsp1_rep	five_prime_UTR	13662652	13662772	.	-	.	Parent=Os03t0356484-01
Chr03	irgsp1_rep	CDS	13662559	13662651	.	-	0	Parent=Os03t0356484-01
Chr03	irgsp1_rep	CDS	13661940	13662069	.	-	0	Parent=Os03t0356484-01
Chr03	irgsp1_rep	CDS	13660923	13661044	.	-	2	Parent=Os03t0356484-01
Chr03	irgsp1_rep	CDS	13660394	13660457	.	-	0	Parent=Os03t0356484-01
Chr03	irgsp1_rep	CDS	13659884	13659996	.	-	2	Parent=Os03t0356484-01
Chr03	irgsp1_rep	three_prime_UTR	13659659	13659883	.	-	.	Parent=Os03t0356484-01
Chr03	irgsp1_rep	mRNA	13666905	13670143	.	+	.	ID=Os03t0356498-01;Name=Os03t0356498-01;Locus_id=Os03g0356498;Note=Similar to rhythmically expressed protein.;Transcript_evidence=AK108402 (DDBJ%2C Best hit);ORF_evidence=NP_001149549.1 (RefSeq);NIAS_FLcDNA=002-142-G05;TENOR=Os03t0356498-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	13666905	13667183	.	+	.	Parent=Os03t0356498-01
Chr03	irgsp1_rep	CDS	13667184	13667345	.	+	0	Parent=Os03t0356498-01
Chr03	irgsp1_rep	CDS	13667530	13667636	.	+	0	Parent=Os03t0356498-01
Chr03	irgsp1_rep	CDS	13668783	13668792	.	+	1	Parent=Os03t0356498-01
Chr03	irgsp1_rep	three_prime_UTR	13668793	13668800	.	+	.	Parent=Os03t0356498-01
Chr03	irgsp1_rep	three_prime_UTR	13668884	13669045	.	+	.	Parent=Os03t0356498-01
Chr03	irgsp1_rep	three_prime_UTR	13669185	13669357	.	+	.	Parent=Os03t0356498-01
Chr03	irgsp1_rep	three_prime_UTR	13669972	13670143	.	+	.	Parent=Os03t0356498-01
Chr03	irgsp1_rep	mRNA	13679030	13679794	.	-	.	ID=Os03t0356526-00;Name=Os03t0356526-00;Locus_id=Os03g0356526;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10L85 (UniProt);TENOR=Os03t0356526-00;KEGG=Os03t0356526-00
Chr03	irgsp1_rep	CDS	13679030	13679794	.	-	0	Parent=Os03t0356526-00
Chr03	irgsp1_rep	mRNA	13700313	13700806	.	-	.	ID=Os03t0356540-01;Name=Os03t0356540-01;Locus_id=Os03g0356540;Note=Hypothetical conserved gene.;Transcript_evidence=AK242517 (DDBJ%2C Best hit);ORF_evidence=Q10L82 (UniProt);NIAS_FLcDNA=J080312H02;TENOR=Os03t0356540-01;KEGG=Os03t0356540-01
Chr03	irgsp1_rep	five_prime_UTR	13700805	13700806	.	-	.	Parent=Os03t0356540-01
Chr03	irgsp1_rep	CDS	13700709	13700804	.	-	0	Parent=Os03t0356540-01
Chr03	irgsp1_rep	three_prime_UTR	13700313	13700708	.	-	.	Parent=Os03t0356540-01
Chr03	irgsp1_rep	mRNA	13712274	13716745	.	+	.	ID=Os03t0356582-01;Name=Os03t0356582-01;Locus_id=Os03g0356582;Note=Phosphatidylinositol-4-phosphate 5-kinase%2C core domain containing protein.;Transcript_evidence=AK120829 (DDBJ%2C Best hit);ORF_evidence=XP_002467839.1 (RefSeq);GO=Biological Process: phosphatidylinositol metabolic process (GO:0046488),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphatidylinositol phosphate kinase activity (GO:0016307),Molecular Function: 1-phosphatidylinositol-4-phosphate 5-kinase activity (GO:0016308);InterPro=Phosphatidylinositol-4-phosphate 5-kinase%2C core (IPR002498),MORN motif (IPR003409),Phosphatidylinositol-4-phosphate 5-kinase%2C core%2C subgroup (IPR016034),Phosphatidylinositol-4-phosphate 5-kinase%2C plant (IPR017163),Phosphatidylinositol-4-phosphate 5-kinase (IPR023610);NIAS_FLcDNA=J023019H02;TENOR=Os03t0356582-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	13712274	13712409	.	+	.	Parent=Os03t0356582-01
Chr03	irgsp1_rep	CDS	13712410	13713575	.	+	0	Parent=Os03t0356582-01
Chr03	irgsp1_rep	CDS	13714276	13714440	.	+	1	Parent=Os03t0356582-01
Chr03	irgsp1_rep	CDS	13714539	13714704	.	+	1	Parent=Os03t0356582-01
Chr03	irgsp1_rep	CDS	13714798	13714914	.	+	0	Parent=Os03t0356582-01
Chr03	irgsp1_rep	CDS	13715010	13715203	.	+	0	Parent=Os03t0356582-01
Chr03	irgsp1_rep	CDS	13715296	13715378	.	+	1	Parent=Os03t0356582-01
Chr03	irgsp1_rep	CDS	13715448	13715532	.	+	2	Parent=Os03t0356582-01
Chr03	irgsp1_rep	CDS	13716016	13716307	.	+	1	Parent=Os03t0356582-01
Chr03	irgsp1_rep	three_prime_UTR	13716308	13716745	.	+	.	Parent=Os03t0356582-01
Chr03	irgsp1_rep	mRNA	13719816	13723311	.	+	.	ID=Os03t0356596-01;Name=Os03t0356596-01;Locus_id=Os03g0356596;Note=Similar to Phosphatidylinositol-4-phosphate 5-kinase-like protein.;Transcript_evidence=AK111845 (DDBJ%2C Best hit);ORF_evidence=NP_191255.1 (RefSeq);GO=Biological Process: phosphatidylinositol metabolic process (GO:0046488),Molecular Function: phosphatidylinositol phosphate kinase activity (GO:0016307);InterPro=Phosphatidylinositol-4-phosphate 5-kinase%2C core (IPR002498),Phosphatidylinositol-4-phosphate 5-kinase%2C core%2C subgroup (IPR016034),Phosphatidylinositol-4-phosphate 5-kinase (IPR023610);NIAS_FLcDNA=J023143M12;TENOR=Os03t0356596-01;KEGG=Os03t0356596-01 (EC:2.7.1.68)
Chr03	irgsp1_rep	CDS	13719816	13720117	.	+	0	Parent=Os03t0356596-01
Chr03	irgsp1_rep	CDS	13720812	13720976	.	+	1	Parent=Os03t0356596-01
Chr03	irgsp1_rep	CDS	13721074	13721239	.	+	1	Parent=Os03t0356596-01
Chr03	irgsp1_rep	CDS	13721332	13721448	.	+	0	Parent=Os03t0356596-01
Chr03	irgsp1_rep	CDS	13721569	13721762	.	+	0	Parent=Os03t0356596-01
Chr03	irgsp1_rep	CDS	13721845	13721951	.	+	1	Parent=Os03t0356596-01
Chr03	irgsp1_rep	CDS	13722026	13722095	.	+	2	Parent=Os03t0356596-01
Chr03	irgsp1_rep	CDS	13722412	13722709	.	+	1	Parent=Os03t0356596-01
Chr03	irgsp1_rep	three_prime_UTR	13722710	13723311	.	+	.	Parent=Os03t0356596-01
Chr03	irgsp1_rep	mRNA	13727680	13738546	.	-	.	ID=Os03t0356638-00;Name=Os03t0356638-00;Locus_id=Os03g0356638;Oryzabase Gene Symbol Synonym(s)=Spin6.2;Note=Similar to Rho GTPase activator.;Transcript_evidence=ab initio prediction;ORF_evidence=B6SV62 (UniProt);GO=Biological Process: signal transduction (GO:0007165),Cellular Component: intracellular (GO:0005622),Molecular Function: protein binding (GO:0005515);InterPro=Rho GTPase-activating protein domain (IPR000198),Pleckstrin homology domain (IPR001849),Rho GTPase activation protein (IPR008936),Pleckstrin homology-type (IPR011993);Oryzabase=20008;TENOR=Os03t0356638-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	13738469	13738546	.	-	0	Parent=Os03t0356638-00
Chr03	irgsp1_rep	CDS	13735470	13735540	.	-	0	Parent=Os03t0356638-00
Chr03	irgsp1_rep	CDS	13735309	13735387	.	-	1	Parent=Os03t0356638-00
Chr03	irgsp1_rep	CDS	13735029	13735173	.	-	0	Parent=Os03t0356638-00
Chr03	irgsp1_rep	CDS	13734817	13734936	.	-	2	Parent=Os03t0356638-00
Chr03	irgsp1_rep	CDS	13734634	13734711	.	-	2	Parent=Os03t0356638-00
Chr03	irgsp1_rep	CDS	13734440	13734495	.	-	2	Parent=Os03t0356638-00
Chr03	irgsp1_rep	CDS	13734277	13734346	.	-	0	Parent=Os03t0356638-00
Chr03	irgsp1_rep	CDS	13733739	13733826	.	-	2	Parent=Os03t0356638-00
Chr03	irgsp1_rep	CDS	13732999	13733242	.	-	1	Parent=Os03t0356638-00
Chr03	irgsp1_rep	CDS	13732531	13732758	.	-	0	Parent=Os03t0356638-00
Chr03	irgsp1_rep	CDS	13731321	13731647	.	-	0	Parent=Os03t0356638-00
Chr03	irgsp1_rep	CDS	13731076	13731125	.	-	0	Parent=Os03t0356638-00
Chr03	irgsp1_rep	CDS	13730320	13730380	.	-	1	Parent=Os03t0356638-00
Chr03	irgsp1_rep	CDS	13730168	13730263	.	-	0	Parent=Os03t0356638-00
Chr03	irgsp1_rep	CDS	13729148	13729261	.	-	0	Parent=Os03t0356638-00
Chr03	irgsp1_rep	CDS	13728905	13729074	.	-	0	Parent=Os03t0356638-00
Chr03	irgsp1_rep	CDS	13728502	13728568	.	-	1	Parent=Os03t0356638-00
Chr03	irgsp1_rep	CDS	13727953	13728141	.	-	0	Parent=Os03t0356638-00
Chr03	irgsp1_rep	CDS	13727680	13727871	.	-	0	Parent=Os03t0356638-00
Chr03	irgsp1_rep	mRNA	13743580	13748142	.	-	.	ID=Os03t0356652-01;Name=Os03t0356652-01;Locus_id=Os03g0356652;Note=Zinc finger%2C C2H2-like domain containing protein.;Transcript_evidence=AK100833 (DDBJ%2C Best hit);ORF_evidence=NP_001148916.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J023123D15;TENOR=Os03t0356652-01;KEGG=Os03t0356652-01
Chr03	irgsp1_rep	five_prime_UTR	13747946	13748142	.	-	.	Parent=Os03t0356652-01
Chr03	irgsp1_rep	CDS	13747857	13747945	.	-	0	Parent=Os03t0356652-01
Chr03	irgsp1_rep	CDS	13746747	13746882	.	-	1	Parent=Os03t0356652-01
Chr03	irgsp1_rep	CDS	13744748	13744885	.	-	0	Parent=Os03t0356652-01
Chr03	irgsp1_rep	CDS	13744361	13744488	.	-	0	Parent=Os03t0356652-01
Chr03	irgsp1_rep	CDS	13743764	13743926	.	-	1	Parent=Os03t0356652-01
Chr03	irgsp1_rep	three_prime_UTR	13743580	13743763	.	-	.	Parent=Os03t0356652-01
Chr03	irgsp1_rep	mRNA	13777133	13788517	.	+	.	ID=Os03t0356700-01;Name=Os03t0356700-01;Locus_id=Os03g0356700;RAP-DB Gene Symbol Synonym(s)=VLN2%2C OsVLN2%2C Os VLN2;RAP-DB Gene Name Synonym(s)=villin 3%2C VILLIN2%2C VILLIN 2;Oryzabase Gene Symbol Synonym(s)=VLN2%2C OsVLN2%2C Os VLN2;Oryzabase Gene Name Synonym(s)=villin 3%2C VILLIN2%2C VILLIN 2;Note=Villin%2C villin/gelsolin superfamily protein%2C Actin binding protein%2C Regulation of plant architecture;Transcript_evidence=NM_001056675.1;ORF_evidence=Q10L71;GO=Biological Process: cytoskeleton organization (GO:0007010),Molecular Function: actin binding (GO:0003779);InterPro=Villin/Gelsolin (IPR007122),ADF-H/Gelsolin-like domain (IPR029006),Gelsolin-like domain (IPR007123),Villin headpiece (IPR003128);NIAS_FLcDNA=J023128M19;Manual Curation=November 12%2C 2015;Literature_PMID=26486445;Oryzabase=16014;Expression=AK121389;TENOR=Os03t0356700-01;KEGG=Os03t0356700-01
Chr03	irgsp1_rep	five_prime_UTR	13777133	13777222	.	+	.	Parent=Os03t0356700-01
Chr03	irgsp1_rep	five_prime_UTR	13778377	13778457	.	+	.	Parent=Os03t0356700-01
Chr03	irgsp1_rep	CDS	13778458	13778513	.	+	0	Parent=Os03t0356700-01
Chr03	irgsp1_rep	CDS	13778623	13778722	.	+	1	Parent=Os03t0356700-01
Chr03	irgsp1_rep	CDS	13778812	13778883	.	+	0	Parent=Os03t0356700-01
Chr03	irgsp1_rep	CDS	13778969	13779205	.	+	0	Parent=Os03t0356700-01
Chr03	irgsp1_rep	CDS	13779284	13779461	.	+	0	Parent=Os03t0356700-01
Chr03	irgsp1_rep	CDS	13779542	13779674	.	+	2	Parent=Os03t0356700-01
Chr03	irgsp1_rep	CDS	13780497	13780656	.	+	1	Parent=Os03t0356700-01
Chr03	irgsp1_rep	CDS	13780736	13780889	.	+	0	Parent=Os03t0356700-01
Chr03	irgsp1_rep	CDS	13780970	13781073	.	+	2	Parent=Os03t0356700-01
Chr03	irgsp1_rep	CDS	13781165	13781323	.	+	0	Parent=Os03t0356700-01
Chr03	irgsp1_rep	CDS	13782210	13782278	.	+	0	Parent=Os03t0356700-01
Chr03	irgsp1_rep	CDS	13782354	13782422	.	+	0	Parent=Os03t0356700-01
Chr03	irgsp1_rep	CDS	13782583	13782720	.	+	0	Parent=Os03t0356700-01
Chr03	irgsp1_rep	CDS	13783616	13783744	.	+	0	Parent=Os03t0356700-01
Chr03	irgsp1_rep	CDS	13784528	13784675	.	+	0	Parent=Os03t0356700-01
Chr03	irgsp1_rep	CDS	13784818	13784828	.	+	2	Parent=Os03t0356700-01
Chr03	irgsp1_rep	CDS	13784905	13785045	.	+	0	Parent=Os03t0356700-01
Chr03	irgsp1_rep	CDS	13785125	13785250	.	+	0	Parent=Os03t0356700-01
Chr03	irgsp1_rep	CDS	13785975	13786031	.	+	0	Parent=Os03t0356700-01
Chr03	irgsp1_rep	CDS	13786166	13786264	.	+	0	Parent=Os03t0356700-01
Chr03	irgsp1_rep	CDS	13786351	13786552	.	+	0	Parent=Os03t0356700-01
Chr03	irgsp1_rep	CDS	13787047	13787291	.	+	2	Parent=Os03t0356700-01
Chr03	irgsp1_rep	CDS	13788136	13788249	.	+	0	Parent=Os03t0356700-01
Chr03	irgsp1_rep	three_prime_UTR	13788250	13788517	.	+	.	Parent=Os03t0356700-01
Chr03	irgsp1_rep	mRNA	13783615	13788685	.	+	.	ID=Os03t0356700-02;Name=Os03t0356700-02;Locus_id=Os03g0356700;Oryzabase Gene Symbol Synonym(s)=VLN2%2C OsVLN2%2C Os VLN2;Oryzabase Gene Name Synonym(s)=villin 3%2C VILLIN2%2C VILLIN 2;Note=Similar to predicted protein.;Transcript_evidence=AK103910 (DDBJ%2C Best hit);ORF_evidence=Q10L70 (UniProt);GO=Biological Process: cytoskeleton organization (GO:0007010),Molecular Function: actin binding (GO:0003779);InterPro=Villin headpiece (IPR003128),Gelsolin (IPR007122),Gelsolin domain (IPR007123);NIAS_FLcDNA=J033150O18;Oryzabase=16014;Expression=AK103910;TENOR=Os03t0356700-02;KEGG=Os03t0356700-02
Chr03	irgsp1_rep	five_prime_UTR	13783615	13783615	.	+	.	Parent=Os03t0356700-02
Chr03	irgsp1_rep	CDS	13783616	13783744	.	+	0	Parent=Os03t0356700-02
Chr03	irgsp1_rep	CDS	13784528	13784675	.	+	0	Parent=Os03t0356700-02
Chr03	irgsp1_rep	CDS	13784818	13784828	.	+	2	Parent=Os03t0356700-02
Chr03	irgsp1_rep	CDS	13784905	13785045	.	+	0	Parent=Os03t0356700-02
Chr03	irgsp1_rep	CDS	13785125	13785250	.	+	0	Parent=Os03t0356700-02
Chr03	irgsp1_rep	CDS	13785975	13786031	.	+	0	Parent=Os03t0356700-02
Chr03	irgsp1_rep	CDS	13786166	13786264	.	+	0	Parent=Os03t0356700-02
Chr03	irgsp1_rep	CDS	13786351	13786552	.	+	0	Parent=Os03t0356700-02
Chr03	irgsp1_rep	CDS	13787047	13787291	.	+	2	Parent=Os03t0356700-02
Chr03	irgsp1_rep	CDS	13788136	13788249	.	+	0	Parent=Os03t0356700-02
Chr03	irgsp1_rep	three_prime_UTR	13788250	13788685	.	+	.	Parent=Os03t0356700-02
Chr03	irgsp1_rep	mRNA	13791080	13791428	.	-	.	ID=Os03t0356801-01;Name=Os03t0356801-01;Locus_id=Os03g0356801;Note=Non-protein coding transcript.;Transcript_evidence=AK241184 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065119N13;TENOR=Os03t0356801-01
Chr03	irgsp1_rep	exon	13791080	13791428	.	-	.	Parent=Os03t0356801-01
Chr03	irgsp1_rep	mRNA	13796252	13799655	.	+	.	ID=Os03t0356900-01;Name=Os03t0356900-01;Locus_id=Os03g0356900;CGSNL Gene Symbol=IPT2;CGSNL Gene Name=ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 2;Oryzabase Gene Symbol Synonym(s)=OsIPT2;Oryzabase Gene Name Synonym(s)=adenosine phosphate isopentenyltransferase 2%2C isopentenyltransferase 2;Note=tRNA isopentenyltransferase family protein.;Transcript_evidence=AK240967 (DDBJ%2C Best hit);ORF_evidence=Q33CE0 (UniProt);GO=Biological Process: tRNA processing (GO:0008033),Molecular Function: ATP binding (GO:0005524);InterPro=tRNA isopentenyltransferase (IPR002627);NIAS_FLcDNA=J065046L22;Oryzabase=6172;TENOR=Os03t0356900-01;KEGG=Os03t0356900-01 (EC:2.5.1.75)
Chr03	irgsp1_rep	five_prime_UTR	13796252	13796392	.	+	.	Parent=Os03t0356900-01
Chr03	irgsp1_rep	five_prime_UTR	13798462	13798474	.	+	.	Parent=Os03t0356900-01
Chr03	irgsp1_rep	CDS	13798475	13799452	.	+	0	Parent=Os03t0356900-01
Chr03	irgsp1_rep	three_prime_UTR	13799453	13799655	.	+	.	Parent=Os03t0356900-01
Chr03	irgsp1_rep	mRNA	13807793	13808292	.	+	.	ID=Os03t0357200-01;Name=Os03t0357200-01;Locus_id=Os03g0357200;Note=Non-protein coding transcript.;Transcript_evidence=AK111362 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-181-H07;TENOR=Os03t0357200-01
Chr03	irgsp1_rep	exon	13807793	13808292	.	+	.	Parent=Os03t0357200-01
Chr03	irgsp1_rep	mRNA	13832394	13833230	.	+	.	ID=Os03t0357400-01;Name=Os03t0357400-01;Locus_id=Os03g0357400;Note=Hypothetical conserved gene.;Transcript_evidence=AK108289 (DDBJ%2C Best hit);ORF_evidence=B8APU4 (UniProt);NIAS_FLcDNA=002-141-D11;Expression=AK108289;TENOR=Os03t0357400-01;KEGG=Os03t0357400-01
Chr03	irgsp1_rep	five_prime_UTR	13832394	13832522	.	+	.	Parent=Os03t0357400-01
Chr03	irgsp1_rep	CDS	13832627	13832782	.	+	0	Parent=Os03t0357400-01
Chr03	irgsp1_rep	three_prime_UTR	13832783	13833230	.	+	.	Parent=Os03t0357400-01
Chr03	irgsp1_rep	mRNA	13833495	13834606	.	-	.	ID=Os03t0357500-01;Name=Os03t0357500-01;Locus_id=Os03g0357500;Note=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor domain containing protein.;Transcript_evidence=AK107779 (DDBJ%2C Best hit);ORF_evidence=NP_001152240.1 (RefSeq);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612);NIAS_FLcDNA=002-133-C04;Expression=AK107779;TENOR=Os03t0357500-01;KEGG=Os03t0357500-01
Chr03	irgsp1_rep	five_prime_UTR	13834567	13834606	.	-	.	Parent=Os03t0357500-01
Chr03	irgsp1_rep	CDS	13833772	13834566	.	-	0	Parent=Os03t0357500-01
Chr03	irgsp1_rep	three_prime_UTR	13833495	13833771	.	-	.	Parent=Os03t0357500-01
Chr03	irgsp1_rep	mRNA	13841934	13860530	.	-	.	ID=Os03t0358000-00;Name=Os03t0358000-00;Locus_id=Os03g0358000;Note=Similar to PWWP domain containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10L59 (UniProt);InterPro=PWWP (IPR000313),RNA polymerase II%2C large subunit%2C CTD (IPR006569);TENOR=Os03t0358000-00;KEGG=Os03t0358000-00
Chr03	irgsp1_rep	CDS	13860387	13860530	.	-	0	Parent=Os03t0358000-00
Chr03	irgsp1_rep	CDS	13858635	13858711	.	-	0	Parent=Os03t0358000-00
Chr03	irgsp1_rep	CDS	13847301	13849457	.	-	1	Parent=Os03t0358000-00
Chr03	irgsp1_rep	CDS	13845811	13846267	.	-	1	Parent=Os03t0358000-00
Chr03	irgsp1_rep	CDS	13845126	13845234	.	-	0	Parent=Os03t0358000-00
Chr03	irgsp1_rep	CDS	13844904	13845046	.	-	2	Parent=Os03t0358000-00
Chr03	irgsp1_rep	CDS	13844666	13844847	.	-	0	Parent=Os03t0358000-00
Chr03	irgsp1_rep	CDS	13843679	13844141	.	-	1	Parent=Os03t0358000-00
Chr03	irgsp1_rep	CDS	13842980	13843598	.	-	0	Parent=Os03t0358000-00
Chr03	irgsp1_rep	CDS	13842083	13842250	.	-	2	Parent=Os03t0358000-00
Chr03	irgsp1_rep	CDS	13841934	13842016	.	-	2	Parent=Os03t0358000-00
Chr03	irgsp1_rep	mRNA	13879058	13882301	.	+	.	ID=Os03t0358100-01;Name=Os03t0358100-01;Locus_id=Os03g0358100;CGSNL Gene Symbol=PHGPX;CGSNL Gene Name=PHOSPHOLIPID HYDROPEROXIDE GLUTATHIONE PEROXIDASE;Oryzabase Gene Symbol Synonym(s)=OsGpx2%2C GPX2%2C OsGPx02%2C PHGPX%2C ricPHGPX%2C riPHGPX;Oryzabase Gene Name Synonym(s)=glutathione peroxidase 2%2C phospholipid hydroperoxide glutathione peroxidase;Note=Similar to Glutathione peroxidase.;Transcript_evidence=AK073938 (DDBJ%2C Best hit);ORF_evidence=Q9FEV2 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: glutathione peroxidase activity (GO:0004602);InterPro=Glutathione peroxidase (IPR000889),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=J033076L03;Oryzabase=11397;Expression=AK073938;TENOR=Os03t0358100-01;KEGG=Os03t0358100-01 (EC:1.11.1.9)
Chr03	irgsp1_rep	five_prime_UTR	13879058	13879149	.	+	.	Parent=Os03t0358100-01
Chr03	irgsp1_rep	CDS	13879150	13879203	.	+	0	Parent=Os03t0358100-01
Chr03	irgsp1_rep	CDS	13879317	13879393	.	+	0	Parent=Os03t0358100-01
Chr03	irgsp1_rep	CDS	13879526	13879587	.	+	1	Parent=Os03t0358100-01
Chr03	irgsp1_rep	CDS	13880042	13880160	.	+	2	Parent=Os03t0358100-01
Chr03	irgsp1_rep	CDS	13881739	13881906	.	+	0	Parent=Os03t0358100-01
Chr03	irgsp1_rep	CDS	13881994	13882023	.	+	0	Parent=Os03t0358100-01
Chr03	irgsp1_rep	three_prime_UTR	13882024	13882301	.	+	.	Parent=Os03t0358100-01
Chr03	irgsp1_rep	mRNA	13883733	13887462	.	-	.	ID=Os03t0358200-00;Name=Os03t0358200-00;Locus_id=Os03g0358200;Oryzabase Gene Symbol Synonym(s)=OsRhmbd8%2C RHMBD8;Oryzabase Gene Name Synonym(s)=Rhomboid 8%2C RHOMBOID 8;Note=Similar to transmembrane protein 115.;Transcript_evidence=BT038763 (DDBJ);ORF_evidence=B6TIG9 (UniProt);InterPro=Protein of unknown function DUF1751%2C integral membrane%2C eukaryotic (IPR013861);Oryzabase=20064;TENOR=Os03t0358200-00;KEGG=Os03t0358200-00
Chr03	irgsp1_rep	CDS	13887338	13887462	.	-	0	Parent=Os03t0358200-00
Chr03	irgsp1_rep	CDS	13886870	13886930	.	-	1	Parent=Os03t0358200-00
Chr03	irgsp1_rep	CDS	13886119	13886285	.	-	0	Parent=Os03t0358200-00
Chr03	irgsp1_rep	CDS	13885395	13885506	.	-	1	Parent=Os03t0358200-00
Chr03	irgsp1_rep	CDS	13885100	13885302	.	-	0	Parent=Os03t0358200-00
Chr03	irgsp1_rep	CDS	13884399	13884530	.	-	1	Parent=Os03t0358200-00
Chr03	irgsp1_rep	CDS	13883820	13883964	.	-	1	Parent=Os03t0358200-00
Chr03	irgsp1_rep	three_prime_UTR	13883733	13883819	.	-	.	Parent=Os03t0358200-00
Chr03	irgsp1_rep	mRNA	13915867	13917357	.	-	.	ID=Os03t0358700-01;Name=Os03t0358700-01;Locus_id=Os03g0358700;Note=Hypothetical protein.;Transcript_evidence=AK109711 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-145-H01;Expression=AK109711;TENOR=Os03t0358700-01;KEGG=Os03t0358700-01
Chr03	irgsp1_rep	five_prime_UTR	13916961	13917357	.	-	.	Parent=Os03t0358700-01
Chr03	irgsp1_rep	CDS	13915980	13916960	.	-	0	Parent=Os03t0358700-01
Chr03	irgsp1_rep	three_prime_UTR	13915867	13915979	.	-	.	Parent=Os03t0358700-01
Chr03	irgsp1_rep	mRNA	13915940	13917546	.	+	.	ID=Os03t0358800-00;Name=Os03t0358800-00;Locus_id=Os03g0358800;Note=Hypothetical conserved gene.;Transcript_evidence=AK364115 (DDBJ);ORF_evidence=Q10L51 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os03t0358800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	13915940	13915988	.	+	.	Parent=Os03t0358800-00
Chr03	irgsp1_rep	CDS	13915989	13917506	.	+	0	Parent=Os03t0358800-00
Chr03	irgsp1_rep	three_prime_UTR	13917507	13917546	.	+	.	Parent=Os03t0358800-00
Chr03	irgsp1_rep	mRNA	13922782	13923768	.	-	.	ID=Os03t0358900-00;Name=Os03t0358900-00;Locus_id=Os03g0358900;Note=Similar to Isopentenyl transferase IPT2.;Transcript_evidence=AB239797 (DDBJ%2C Best hit);ORF_evidence=Q33CD9 (UniProt);GO=Biological Process: tRNA processing (GO:0008033),Molecular Function: ATP binding (GO:0005524);InterPro=tRNA isopentenyltransferase (IPR002627);TENOR=Os03t0358900-00;KEGG=Os03t0358900-00
Chr03	irgsp1_rep	CDS	13922782	13923768	.	-	0	Parent=Os03t0358900-00
Chr03	irgsp1_rep	mRNA	13927597	13934879	.	+	.	ID=Os03t0358975-00;Name=Os03t0358975-00;Locus_id=Os03g0358975;Note=Hypothetical protein.;Transcript_evidence=tplb0040d18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0358975-00
Chr03	irgsp1_rep	five_prime_UTR	13927597	13928300	.	+	.	Parent=Os03t0358975-00
Chr03	irgsp1_rep	five_prime_UTR	13928740	13928898	.	+	.	Parent=Os03t0358975-00
Chr03	irgsp1_rep	five_prime_UTR	13930138	13930260	.	+	.	Parent=Os03t0358975-00
Chr03	irgsp1_rep	five_prime_UTR	13930416	13930619	.	+	.	Parent=Os03t0358975-00
Chr03	irgsp1_rep	five_prime_UTR	13930703	13930741	.	+	.	Parent=Os03t0358975-00
Chr03	irgsp1_rep	CDS	13930742	13930811	.	+	0	Parent=Os03t0358975-00
Chr03	irgsp1_rep	CDS	13931601	13931664	.	+	2	Parent=Os03t0358975-00
Chr03	irgsp1_rep	CDS	13932300	13932447	.	+	1	Parent=Os03t0358975-00
Chr03	irgsp1_rep	CDS	13932749	13932817	.	+	0	Parent=Os03t0358975-00
Chr03	irgsp1_rep	three_prime_UTR	13932818	13932843	.	+	.	Parent=Os03t0358975-00
Chr03	irgsp1_rep	three_prime_UTR	13933245	13933371	.	+	.	Parent=Os03t0358975-00
Chr03	irgsp1_rep	three_prime_UTR	13933579	13933679	.	+	.	Parent=Os03t0358975-00
Chr03	irgsp1_rep	three_prime_UTR	13934086	13934160	.	+	.	Parent=Os03t0358975-00
Chr03	irgsp1_rep	three_prime_UTR	13934815	13934879	.	+	.	Parent=Os03t0358975-00
Chr03	irgsp1_rep	mRNA	13927615	13932835	.	-	.	ID=Os03t0359000-01;Name=Os03t0359000-01;Locus_id=Os03g0359000;Oryzabase Gene Symbol Synonym(s)=OsPOP8%2C POP8;Oryzabase Gene Name Synonym(s)=Prolyl Oligopeptidase 8%2C PROLYL OLIGOPEPTIDASE 8;Note=Ubiquitin interacting motif domain containing protein.;Transcript_evidence=AK064512 (DDBJ%2C Best hit);ORF_evidence=Q10L49 (UniProt);InterPro=Ubiquitin interacting motif (IPR003903);NIAS_FLcDNA=002-111-E09;Oryzabase=20016;Expression=AK064512;TENOR=Os03t0359000-01;KEGG=Os03t0359000-01
Chr03	irgsp1_rep	five_prime_UTR	13932835	13932835	.	-	.	Parent=Os03t0359000-01
Chr03	irgsp1_rep	CDS	13932749	13932834	.	-	0	Parent=Os03t0359000-01
Chr03	irgsp1_rep	CDS	13932324	13932447	.	-	1	Parent=Os03t0359000-01
Chr03	irgsp1_rep	CDS	13931603	13931683	.	-	0	Parent=Os03t0359000-01
Chr03	irgsp1_rep	CDS	13930715	13930813	.	-	0	Parent=Os03t0359000-01
Chr03	irgsp1_rep	CDS	13930470	13930625	.	-	0	Parent=Os03t0359000-01
Chr03	irgsp1_rep	CDS	13930343	13930397	.	-	0	Parent=Os03t0359000-01
Chr03	irgsp1_rep	CDS	13930191	13930258	.	-	2	Parent=Os03t0359000-01
Chr03	irgsp1_rep	CDS	13929897	13929941	.	-	0	Parent=Os03t0359000-01
Chr03	irgsp1_rep	CDS	13928740	13928907	.	-	0	Parent=Os03t0359000-01
Chr03	irgsp1_rep	CDS	13927818	13928300	.	-	0	Parent=Os03t0359000-01
Chr03	irgsp1_rep	three_prime_UTR	13927615	13927817	.	-	.	Parent=Os03t0359000-01
Chr03	irgsp1_rep	mRNA	13947662	13948782	.	-	.	ID=Os03t0359100-01;Name=Os03t0359100-01;Locus_id=Os03g0359100;Note=Similar to aminotransferase%2C class IV family protein.;Transcript_evidence=AK063182 (DDBJ%2C Best hit);ORF_evidence=B6TME5 (UniProt);NIAS_FLcDNA=001-112-A12;Expression=AK063182;TENOR=Os03t0359100-01;KEGG=Os03t0359100-01 (EC:2.6.1.42)
Chr03	irgsp1_rep	five_prime_UTR	13948705	13948782	.	-	.	Parent=Os03t0359100-01
Chr03	irgsp1_rep	CDS	13948603	13948704	.	-	0	Parent=Os03t0359100-01
Chr03	irgsp1_rep	CDS	13948314	13948412	.	-	0	Parent=Os03t0359100-01
Chr03	irgsp1_rep	CDS	13947783	13947854	.	-	0	Parent=Os03t0359100-01
Chr03	irgsp1_rep	CDS	13947662	13947706	.	-	0	Parent=Os03t0359100-01
Chr03	irgsp1_rep	mRNA	13941461	13948781	.	-	.	ID=Os03t0359100-02;Name=Os03t0359100-02;Locus_id=Os03g0359100;Note=Similar to Aminotransferase%2C class IV family protein.;Transcript_evidence=AK073091 (DDBJ%2C Best hit);ORF_evidence=B6TME5 (UniProt);NIAS_FLcDNA=J033022E01;Expression=AK073091;TENOR=Os03t0359100-02;KEGG=Os03t0359100-02
Chr03	irgsp1_rep	five_prime_UTR	13948705	13948781	.	-	.	Parent=Os03t0359100-02
Chr03	irgsp1_rep	CDS	13948603	13948704	.	-	0	Parent=Os03t0359100-02
Chr03	irgsp1_rep	CDS	13948314	13948412	.	-	0	Parent=Os03t0359100-02
Chr03	irgsp1_rep	CDS	13947783	13947859	.	-	0	Parent=Os03t0359100-02
Chr03	irgsp1_rep	CDS	13947664	13947706	.	-	1	Parent=Os03t0359100-02
Chr03	irgsp1_rep	three_prime_UTR	13947614	13947663	.	-	.	Parent=Os03t0359100-02
Chr03	irgsp1_rep	three_prime_UTR	13947359	13947496	.	-	.	Parent=Os03t0359100-02
Chr03	irgsp1_rep	three_prime_UTR	13946978	13947036	.	-	.	Parent=Os03t0359100-02
Chr03	irgsp1_rep	three_prime_UTR	13946765	13946867	.	-	.	Parent=Os03t0359100-02
Chr03	irgsp1_rep	three_prime_UTR	13945611	13945799	.	-	.	Parent=Os03t0359100-02
Chr03	irgsp1_rep	three_prime_UTR	13945411	13945511	.	-	.	Parent=Os03t0359100-02
Chr03	irgsp1_rep	three_prime_UTR	13945277	13945331	.	-	.	Parent=Os03t0359100-02
Chr03	irgsp1_rep	three_prime_UTR	13944932	13945018	.	-	.	Parent=Os03t0359100-02
Chr03	irgsp1_rep	three_prime_UTR	13944760	13944811	.	-	.	Parent=Os03t0359100-02
Chr03	irgsp1_rep	three_prime_UTR	13944307	13944392	.	-	.	Parent=Os03t0359100-02
Chr03	irgsp1_rep	three_prime_UTR	13944134	13944187	.	-	.	Parent=Os03t0359100-02
Chr03	irgsp1_rep	three_prime_UTR	13943947	13944030	.	-	.	Parent=Os03t0359100-02
Chr03	irgsp1_rep	three_prime_UTR	13942958	13943817	.	-	.	Parent=Os03t0359100-02
Chr03	irgsp1_rep	three_prime_UTR	13942144	13942179	.	-	.	Parent=Os03t0359100-02
Chr03	irgsp1_rep	three_prime_UTR	13941461	13941816	.	-	.	Parent=Os03t0359100-02
Chr03	irgsp1_rep	mRNA	13947783	13948691	.	+	.	ID=Os03t0359350-00;Name=Os03t0359350-00;Locus_id=Os03g0359350;Note=Non-protein coding transcript.;Transcript_evidence=BT086883 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0359350-00
Chr03	irgsp1_rep	exon	13947783	13947865	.	+	.	Parent=Os03t0359350-00
Chr03	irgsp1_rep	exon	13948322	13948403	.	+	.	Parent=Os03t0359350-00
Chr03	irgsp1_rep	exon	13948595	13948691	.	+	.	Parent=Os03t0359350-00
Chr03	irgsp1_rep	mRNA	13970111	13971584	.	+	.	ID=Os03t0359600-01;Name=Os03t0359600-01;Locus_id=Os03g0359600;CGSNL Gene Symbol=GATL3;CGSNL Gene Name=GALACTURONOSYLTRANSFERASE-LIKE 3;Oryzabase Gene Symbol Synonym(s)=OsGATL3;Oryzabase Gene Name Synonym(s)=galacturonosyltransferase-like 3;Note=Similar to Avr9/Cf-9 rapidly elicited protein 231.;Transcript_evidence=AK100121 (DDBJ%2C Best hit),AK072250 (DDBJ%2C Best hit);ORF_evidence=XP_002311936.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 8 (IPR002495);NIAS_FLcDNA=J023007K21,J023004F04;Oryzabase=23246;Expression=AK100121;TENOR=Os03t0359600-01;KEGG=Os03t0359600-01
Chr03	irgsp1_rep	five_prime_UTR	13970111	13970377	.	+	.	Parent=Os03t0359600-01
Chr03	irgsp1_rep	CDS	13970378	13971421	.	+	0	Parent=Os03t0359600-01
Chr03	irgsp1_rep	three_prime_UTR	13971422	13971584	.	+	.	Parent=Os03t0359600-01
Chr03	irgsp1_rep	mRNA	13975002	13981417	.	+	.	ID=Os03t0359700-01;Name=Os03t0359700-01;Locus_id=Os03g0359700;Note=Mo25-like domain containing protein.;Transcript_evidence=AK060778 (DDBJ%2C Best hit);ORF_evidence=NP_001149546.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Mo25-like (IPR013878),Armadillo-type fold (IPR016024);NIAS_FLcDNA=001-033-C03;Expression=AK060778;TENOR=Os03t0359700-01;KEGG=Os03t0359700-01
Chr03	irgsp1_rep	five_prime_UTR	13975002	13975084	.	+	.	Parent=Os03t0359700-01
Chr03	irgsp1_rep	CDS	13975085	13975195	.	+	0	Parent=Os03t0359700-01
Chr03	irgsp1_rep	CDS	13975847	13976011	.	+	0	Parent=Os03t0359700-01
Chr03	irgsp1_rep	CDS	13976090	13976208	.	+	0	Parent=Os03t0359700-01
Chr03	irgsp1_rep	CDS	13976507	13976581	.	+	1	Parent=Os03t0359700-01
Chr03	irgsp1_rep	CDS	13979527	13979620	.	+	1	Parent=Os03t0359700-01
Chr03	irgsp1_rep	CDS	13979721	13979780	.	+	0	Parent=Os03t0359700-01
Chr03	irgsp1_rep	CDS	13980035	13980100	.	+	0	Parent=Os03t0359700-01
Chr03	irgsp1_rep	CDS	13980175	13980273	.	+	0	Parent=Os03t0359700-01
Chr03	irgsp1_rep	CDS	13980611	13980655	.	+	0	Parent=Os03t0359700-01
Chr03	irgsp1_rep	CDS	13980883	13980985	.	+	0	Parent=Os03t0359700-01
Chr03	irgsp1_rep	CDS	13981149	13981222	.	+	2	Parent=Os03t0359700-01
Chr03	irgsp1_rep	three_prime_UTR	13981223	13981417	.	+	.	Parent=Os03t0359700-01
Chr03	irgsp1_rep	mRNA	13975006	13975807	.	+	.	ID=Os03t0359700-02;Name=Os03t0359700-02;Locus_id=Os03g0359700;Note=Similar to protein Mo25.;Transcript_evidence=AK109309 (DDBJ%2C Best hit);ORF_evidence=NP_001149715.1 (RefSeq);NIAS_FLcDNA=002-188-F02;Expression=AK109309;TENOR=Os03t0359700-02;KEGG=Os03t0359700-02
Chr03	irgsp1_rep	five_prime_UTR	13975006	13975084	.	+	.	Parent=Os03t0359700-02
Chr03	irgsp1_rep	CDS	13975085	13975351	.	+	0	Parent=Os03t0359700-02
Chr03	irgsp1_rep	three_prime_UTR	13975352	13975807	.	+	.	Parent=Os03t0359700-02
Chr03	irgsp1_rep	mRNA	13992264	13993244	.	+	.	ID=Os03t0360000-00;Name=Os03t0360000-00;Locus_id=Os03g0360000;Note=Similar to Arginine decarboxylase.;Transcript_evidence=BT085866 (DDBJ);ORF_evidence=A2Y8W3 (UniProt);TENOR=Os03t0360000-00;KEGG=Os03t0360000-00
Chr03	irgsp1_rep	five_prime_UTR	13992264	13992704	.	+	.	Parent=Os03t0360000-00
Chr03	irgsp1_rep	CDS	13992705	13993244	.	+	0	Parent=Os03t0360000-00
Chr03	irgsp1_rep	mRNA	13996016	14000384	.	+	.	ID=Os03t0360200-00;Name=Os03t0360200-00;Locus_id=Os03g0360200;Note=Hypothetical protein.;Transcript_evidence=EU958185 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0360200-00
Chr03	irgsp1_rep	five_prime_UTR	13996016	13996218	.	+	.	Parent=Os03t0360200-00
Chr03	irgsp1_rep	CDS	13996219	13996632	.	+	0	Parent=Os03t0360200-00
Chr03	irgsp1_rep	three_prime_UTR	13996633	13996665	.	+	.	Parent=Os03t0360200-00
Chr03	irgsp1_rep	three_prime_UTR	14000219	14000384	.	+	.	Parent=Os03t0360200-00
Chr03	irgsp1_rep	mRNA	13995812	13996647	.	-	.	ID=Os03t0360300-01;Name=Os03t0360300-01;Locus_id=Os03g0360300;Note=Conserved hypothetical protein.;Transcript_evidence=AK110606 (DDBJ%2C Best hit);ORF_evidence=A3AI56 (UniProt);NIAS_FLcDNA=002-168-G11;TENOR=Os03t0360300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	13995994	13996647	.	-	0	Parent=Os03t0360300-01
Chr03	irgsp1_rep	three_prime_UTR	13995812	13995993	.	-	.	Parent=Os03t0360300-01
Chr03	irgsp1_rep	mRNA	14000674	14003970	.	-	.	ID=Os03t0360500-01;Name=Os03t0360500-01;Locus_id=Os03g0360500;Note=Protein of unknown function DUF1077 family protein.;Transcript_evidence=AK101285 (DDBJ%2C Best hit);ORF_evidence=B8APW1 (UniProt);InterPro=Protein of unknown function DUF1077%2C TMEM85 (IPR009445);NIAS_FLcDNA=J033033E17;TENOR=Os03t0360500-01
Chr03	irgsp1_rep	five_prime_UTR	14003840	14003970	.	-	.	Parent=Os03t0360500-01
Chr03	irgsp1_rep	CDS	14003717	14003839	.	-	0	Parent=Os03t0360500-01
Chr03	irgsp1_rep	CDS	14003553	14003609	.	-	0	Parent=Os03t0360500-01
Chr03	irgsp1_rep	CDS	14003151	14003304	.	-	0	Parent=Os03t0360500-01
Chr03	irgsp1_rep	CDS	14002175	14002272	.	-	2	Parent=Os03t0360500-01
Chr03	irgsp1_rep	CDS	14002028	14002093	.	-	0	Parent=Os03t0360500-01
Chr03	irgsp1_rep	CDS	14000901	14000939	.	-	0	Parent=Os03t0360500-01
Chr03	irgsp1_rep	three_prime_UTR	14000674	14000900	.	-	.	Parent=Os03t0360500-01
Chr03	irgsp1_rep	mRNA	14000674	14003925	.	-	.	ID=Os03t0360500-02;Name=Os03t0360500-02;Locus_id=Os03g0360500;Note=Protein of unknown function DUF1077 family protein.;Transcript_evidence=AK059166 (DDBJ%2C Best hit);ORF_evidence=B8APW1 (UniProt);InterPro=Protein of unknown function DUF1077%2C TMEM85 (IPR009445);NIAS_FLcDNA=001-023-E02;TENOR=Os03t0360500-02
Chr03	irgsp1_rep	five_prime_UTR	14003840	14003925	.	-	.	Parent=Os03t0360500-02
Chr03	irgsp1_rep	CDS	14003717	14003839	.	-	0	Parent=Os03t0360500-02
Chr03	irgsp1_rep	CDS	14003553	14003609	.	-	0	Parent=Os03t0360500-02
Chr03	irgsp1_rep	CDS	14003151	14003304	.	-	0	Parent=Os03t0360500-02
Chr03	irgsp1_rep	CDS	14002175	14002272	.	-	2	Parent=Os03t0360500-02
Chr03	irgsp1_rep	CDS	14002028	14002093	.	-	0	Parent=Os03t0360500-02
Chr03	irgsp1_rep	CDS	14000901	14000939	.	-	0	Parent=Os03t0360500-02
Chr03	irgsp1_rep	three_prime_UTR	14000674	14000900	.	-	.	Parent=Os03t0360500-02
Chr03	irgsp1_rep	mRNA	14006157	14007356	.	+	.	ID=Os03t0360600-00;Name=Os03t0360600-00;Locus_id=Os03g0360600;Note=Mitochodrial transcription termination factor-related family protein.;Transcript_evidence=CT835208 (DDBJ%2C Best hit);ORF_evidence=NP_001150940.1 (RefSeq);InterPro=Mitochodrial transcription termination factor-related (IPR003690);TENOR=Os03t0360600-00;KEGG=Os03t0360600-00
Chr03	irgsp1_rep	five_prime_UTR	14006157	14006231	.	+	.	Parent=Os03t0360600-00
Chr03	irgsp1_rep	CDS	14006232	14007137	.	+	0	Parent=Os03t0360600-00
Chr03	irgsp1_rep	three_prime_UTR	14007138	14007356	.	+	.	Parent=Os03t0360600-00
Chr03	irgsp1_rep	mRNA	14010213	14013827	.	+	.	ID=Os03t0360700-01;Name=Os03t0360700-01;Locus_id=Os03g0360700;Oryzabase Gene Symbol Synonym(s)=OsMSR1%2C MSR1%2C OsMSRB5%2C MSRB5;Oryzabase Gene Name Synonym(s)=peptide methionine sulfoxidereductase 1%2C Methionine sulfoxide reductase B5;Note=Similar to Protein-methionine-S-oxide reductase%2C PilB family.;Transcript_evidence=AK068764 (DDBJ%2C Best hit),AK109429 (DDBJ%2C Best hit);ORF_evidence=Q10L32 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peptide-methionine-(S)-S-oxide reductase activity (GO:0008113);InterPro=Methionine sulphoxide reductase B (IPR002579),Mss4-like (IPR011057);NIAS_FLcDNA=J013162A14,006-307-G09;Oryzabase=19247;Expression=AK068764;TENOR=Os03t0360700-01;KEGG=Os03t0360700-01
Chr03	irgsp1_rep	five_prime_UTR	14010213	14010327	.	+	.	Parent=Os03t0360700-01
Chr03	irgsp1_rep	CDS	14010328	14010431	.	+	0	Parent=Os03t0360700-01
Chr03	irgsp1_rep	CDS	14013235	14013391	.	+	1	Parent=Os03t0360700-01
Chr03	irgsp1_rep	CDS	14013478	14013627	.	+	0	Parent=Os03t0360700-01
Chr03	irgsp1_rep	three_prime_UTR	14013628	14013827	.	+	.	Parent=Os03t0360700-01
Chr03	irgsp1_rep	mRNA	14015234	14016203	.	-	.	ID=Os03t0360750-00;Name=Os03t0360750-00;Locus_id=Os03g0360750;Note=Hypothetical protein.;Transcript_evidence=FP100986 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0360750-00
Chr03	irgsp1_rep	five_prime_UTR	14016203	14016203	.	-	.	Parent=Os03t0360750-00
Chr03	irgsp1_rep	CDS	14015975	14016202	.	-	0	Parent=Os03t0360750-00
Chr03	irgsp1_rep	CDS	14015366	14015827	.	-	0	Parent=Os03t0360750-00
Chr03	irgsp1_rep	three_prime_UTR	14015234	14015365	.	-	.	Parent=Os03t0360750-00
Chr03	irgsp1_rep	mRNA	14015261	14018643	.	+	.	ID=Os03t0360800-00;Name=Os03t0360800-00;Locus_id=Os03g0360800;Note=Similar to Endonuclease/Exonuclease/phosphatase family protein%2C expressed.;Transcript_evidence=BT063093 (DDBJ);ORF_evidence=Q10L30 (UniProt);InterPro=Endonuclease/exonuclease/phosphatase (IPR005135);TENOR=Os03t0360800-00;KEGG=Os03t0360800-00
Chr03	irgsp1_rep	CDS	14015261	14016231	.	+	0	Parent=Os03t0360800-00
Chr03	irgsp1_rep	CDS	14017732	14017942	.	+	1	Parent=Os03t0360800-00
Chr03	irgsp1_rep	CDS	14018138	14018270	.	+	0	Parent=Os03t0360800-00
Chr03	irgsp1_rep	CDS	14018387	14018643	.	+	2	Parent=Os03t0360800-00
Chr03	irgsp1_rep	mRNA	14035702	14037330	.	+	.	ID=Os03t0361100-00;Name=Os03t0361100-00;Locus_id=Os03g0361100;Oryzabase Gene Symbol Synonym(s)=OsTPS11;Oryzabase Gene Name Synonym(s)=terpene synthase 11;Note=Similar to Terpene synthase family%2C metal binding domain containing protein%2C expressed.;Transcript_evidence=FP095722 (DDBJ);ORF_evidence=Q10L24 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: lyase activity (GO:0016829);InterPro=Terpene synthase-like (IPR001906),Terpene synthase%2C metal-binding domain (IPR005630),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930),Terpenoid synthase (IPR008949);Oryzabase=18708;TENOR=Os03t0361100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	14035702	14036120	.	+	0	Parent=Os03t0361100-00
Chr03	irgsp1_rep	CDS	14036208	14036426	.	+	1	Parent=Os03t0361100-00
Chr03	irgsp1_rep	CDS	14036517	14036652	.	+	1	Parent=Os03t0361100-00
Chr03	irgsp1_rep	CDS	14036761	14037330	.	+	0	Parent=Os03t0361100-00
Chr03	irgsp1_rep	mRNA	14043259	14047463	.	-	.	ID=Os03t0361500-00;Name=Os03t0361500-00;Locus_id=Os03g0361500;Note=Similar to Terpene synthase family%2C metal binding domain containing protein%2C expressed.;Transcript_evidence=EU974551 (DDBJ);ORF_evidence=Q10L24 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: lyase activity (GO:0016829);InterPro=Terpene synthase-like (IPR001906),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930);TENOR=Os03t0361500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	14047453	14047463	.	-	.	Parent=Os03t0361500-00
Chr03	irgsp1_rep	CDS	14047351	14047452	.	-	0	Parent=Os03t0361500-00
Chr03	irgsp1_rep	CDS	14045428	14045698	.	-	0	Parent=Os03t0361500-00
Chr03	irgsp1_rep	CDS	14044860	14045035	.	-	2	Parent=Os03t0361500-00
Chr03	irgsp1_rep	three_prime_UTR	14044659	14044859	.	-	.	Parent=Os03t0361500-00
Chr03	irgsp1_rep	three_prime_UTR	14044175	14044393	.	-	.	Parent=Os03t0361500-00
Chr03	irgsp1_rep	three_prime_UTR	14043921	14044056	.	-	.	Parent=Os03t0361500-00
Chr03	irgsp1_rep	three_prime_UTR	14043259	14043812	.	-	.	Parent=Os03t0361500-00
Chr03	irgsp1_rep	mRNA	14061363	14066504	.	+	.	ID=Os03t0361600-00;Name=Os03t0361600-00;Locus_id=Os03g0361600;Oryzabase Gene Symbol Synonym(s)=OsTPS12;Oryzabase Gene Name Synonym(s)=terpene synthase 12;Note=Similar to Terpene synthase family%2C metal binding domain containing protein%2C expressed.;Transcript_evidence=BT009151 (DDBJ);ORF_evidence=Q10L24 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: lyase activity (GO:0016829);InterPro=Terpene synthase-like (IPR001906),Terpene synthase%2C metal-binding domain (IPR005630),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930),Terpenoid synthase (IPR008949);Oryzabase=18709;TENOR=Os03t0361600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	14061363	14061432	.	+	.	Parent=Os03t0361600-00
Chr03	irgsp1_rep	CDS	14061433	14061440	.	+	0	Parent=Os03t0361600-00
Chr03	irgsp1_rep	CDS	14061820	14062103	.	+	1	Parent=Os03t0361600-00
Chr03	irgsp1_rep	CDS	14063222	14063600	.	+	2	Parent=Os03t0361600-00
Chr03	irgsp1_rep	CDS	14064267	14064485	.	+	1	Parent=Os03t0361600-00
Chr03	irgsp1_rep	CDS	14064573	14064708	.	+	1	Parent=Os03t0361600-00
Chr03	irgsp1_rep	CDS	14065969	14066274	.	+	0	Parent=Os03t0361600-00
Chr03	irgsp1_rep	three_prime_UTR	14066275	14066504	.	+	.	Parent=Os03t0361600-00
Chr03	irgsp1_rep	mRNA	14067751	14070339	.	-	.	ID=Os03t0361700-00;Name=Os03t0361700-00;Locus_id=Os03g0361700;Oryzabase Gene Symbol Synonym(s)=OsTPS13;Oryzabase Gene Name Synonym(s)=terpene synthase 13;Note=Similar to Terpene synthase family%2C metal binding domain containing protein%2C expressed.;Transcript_evidence=BT055982 (DDBJ);ORF_evidence=Q10L24 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: lyase activity (GO:0016829);InterPro=Terpene synthase-like (IPR001906),Terpene synthase%2C metal-binding domain (IPR005630),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930),Terpenoid synthase (IPR008949);Oryzabase=18710;TENOR=Os03t0361700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	14070054	14070339	.	-	0	Parent=Os03t0361700-00
Chr03	irgsp1_rep	CDS	14069268	14069640	.	-	2	Parent=Os03t0361700-00
Chr03	irgsp1_rep	CDS	14068800	14069018	.	-	1	Parent=Os03t0361700-00
Chr03	irgsp1_rep	CDS	14068413	14068548	.	-	1	Parent=Os03t0361700-00
Chr03	irgsp1_rep	CDS	14067751	14068296	.	-	0	Parent=Os03t0361700-00
Chr03	irgsp1_rep	mRNA	14087515	14092508	.	+	.	ID=Os03t0362032-00;Name=Os03t0362032-00;Locus_id=Os03g0362032;Note=Terpene synthase-like domain containing protein.;Transcript_evidence=BT055982 (DDBJ);ORF_evidence=B9F8J4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: lyase activity (GO:0016829);InterPro=Terpene synthase-like (IPR001906),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930),Terpenoid synthase (IPR008949);TENOR=Os03t0362032-00
Chr03	irgsp1_rep	CDS	14087515	14087860	.	+	0	Parent=Os03t0362032-00
Chr03	irgsp1_rep	CDS	14089471	14089843	.	+	2	Parent=Os03t0362032-00
Chr03	irgsp1_rep	CDS	14090490	14090502	.	+	1	Parent=Os03t0362032-00
Chr03	irgsp1_rep	three_prime_UTR	14090503	14090677	.	+	.	Parent=Os03t0362032-00
Chr03	irgsp1_rep	three_prime_UTR	14091547	14092060	.	+	.	Parent=Os03t0362032-00
Chr03	irgsp1_rep	three_prime_UTR	14092271	14092508	.	+	.	Parent=Os03t0362032-00
Chr03	irgsp1_rep	mRNA	14094733	14097954	.	+	.	ID=Os03t0362200-01;Name=Os03t0362200-01;Locus_id=Os03g0362200;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK120364 (DDBJ%2C Best hit);ORF_evidence=A2XGZ5 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013068O19;Expression=AK120364;TENOR=Os03t0362200-01;KEGG=Os03t0362200-01
Chr03	irgsp1_rep	five_prime_UTR	14094733	14094797	.	+	.	Parent=Os03t0362200-01
Chr03	irgsp1_rep	CDS	14094798	14096879	.	+	0	Parent=Os03t0362200-01
Chr03	irgsp1_rep	CDS	14097161	14097637	.	+	0	Parent=Os03t0362200-01
Chr03	irgsp1_rep	three_prime_UTR	14097638	14097954	.	+	.	Parent=Os03t0362200-01
Chr03	irgsp1_rep	mRNA	14107329	14110687	.	-	.	ID=Os03t0362500-00;Name=Os03t0362500-00;Locus_id=Os03g0362500;Note=Similar to Terpene synthase family%2C metal binding domain containing protein%2C expressed.;Transcript_evidence=BT009151 (DDBJ);ORF_evidence=Q10L24 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: lyase activity (GO:0016829);InterPro=Terpene synthase-like (IPR001906),Terpene synthase%2C metal-binding domain (IPR005630),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930),Terpenoid synthase (IPR008949);TENOR=Os03t0362500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	14110629	14110687	.	-	.	Parent=Os03t0362500-00
Chr03	irgsp1_rep	CDS	14110607	14110628	.	-	0	Parent=Os03t0362500-00
Chr03	irgsp1_rep	CDS	14109973	14110242	.	-	2	Parent=Os03t0362500-00
Chr03	irgsp1_rep	CDS	14109443	14109818	.	-	2	Parent=Os03t0362500-00
Chr03	irgsp1_rep	CDS	14108427	14108645	.	-	1	Parent=Os03t0362500-00
Chr03	irgsp1_rep	CDS	14108178	14108313	.	-	1	Parent=Os03t0362500-00
Chr03	irgsp1_rep	CDS	14107470	14108039	.	-	0	Parent=Os03t0362500-00
Chr03	irgsp1_rep	three_prime_UTR	14107329	14107469	.	-	.	Parent=Os03t0362500-00
Chr03	irgsp1_rep	mRNA	14143989	14146663	.	+	.	ID=Os03t0363100-00;Name=Os03t0363100-00;Locus_id=Os03g0363100;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001050161.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);TENOR=Os03t0363100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	14143989	14146067	.	+	0	Parent=Os03t0363100-00
Chr03	irgsp1_rep	CDS	14146190	14146663	.	+	0	Parent=Os03t0363100-00
Chr03	irgsp1_rep	mRNA	14147678	14150239	.	+	.	ID=Os03t0363200-01;Name=Os03t0363200-01;Locus_id=Os03g0363200;Note=Protein of unknown function DUF455 family protein.;Transcript_evidence=AK287787 (DDBJ%2C Best hit);ORF_evidence=Q9LZ73 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: transition metal ion binding (GO:0046914);InterPro=Protein of unknown function DUF455 (IPR007402),Ferritin/ribonucleotide reductase-like (IPR009078);NIAS_FLcDNA=J065172L19;TENOR=Os03t0363200-01;KEGG=Os03t0363200-01
Chr03	irgsp1_rep	five_prime_UTR	14147678	14147761	.	+	.	Parent=Os03t0363200-01
Chr03	irgsp1_rep	CDS	14147762	14148343	.	+	0	Parent=Os03t0363200-01
Chr03	irgsp1_rep	CDS	14149511	14150047	.	+	0	Parent=Os03t0363200-01
Chr03	irgsp1_rep	three_prime_UTR	14150048	14150239	.	+	.	Parent=Os03t0363200-01
Chr03	irgsp1_rep	mRNA	14151286	14153646	.	+	.	ID=Os03t0363400-01;Name=Os03t0363400-01;Locus_id=Os03g0363400;Note=Uncharacterised protein family UPF0153 domain containing protein.;Transcript_evidence=AK099518 (DDBJ%2C Best hit);ORF_evidence=Q10L08 (UniProt);InterPro=Uncharacterised protein family UPF0153 (IPR005358);NIAS_FLcDNA=J013030E03;Expression=AK099518;TENOR=Os03t0363400-01;KEGG=Os03t0363400-01
Chr03	irgsp1_rep	five_prime_UTR	14151286	14151327	.	+	.	Parent=Os03t0363400-01
Chr03	irgsp1_rep	CDS	14151328	14151756	.	+	0	Parent=Os03t0363400-01
Chr03	irgsp1_rep	CDS	14152190	14152268	.	+	0	Parent=Os03t0363400-01
Chr03	irgsp1_rep	CDS	14152374	14152467	.	+	2	Parent=Os03t0363400-01
Chr03	irgsp1_rep	CDS	14152551	14152683	.	+	1	Parent=Os03t0363400-01
Chr03	irgsp1_rep	three_prime_UTR	14152684	14152689	.	+	.	Parent=Os03t0363400-01
Chr03	irgsp1_rep	three_prime_UTR	14153123	14153646	.	+	.	Parent=Os03t0363400-01
Chr03	irgsp1_rep	mRNA	14153896	14159179	.	-	.	ID=Os03t0363500-01;Name=Os03t0363500-01;Locus_id=Os03g0363500;Note=Similar to Vacuolar monosaccharide symporter 1.;Transcript_evidence=AK066510 (DDBJ%2C Best hit);ORF_evidence=E9N3N3 (UniProt);NIAS_FLcDNA=J013068L16;TENOR=Os03t0363500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	14159113	14159179	.	-	.	Parent=Os03t0363500-01
Chr03	irgsp1_rep	five_prime_UTR	14158594	14158841	.	-	.	Parent=Os03t0363500-01
Chr03	irgsp1_rep	five_prime_UTR	14158047	14158161	.	-	.	Parent=Os03t0363500-01
Chr03	irgsp1_rep	CDS	14157933	14158046	.	-	0	Parent=Os03t0363500-01
Chr03	irgsp1_rep	CDS	14157749	14157847	.	-	0	Parent=Os03t0363500-01
Chr03	irgsp1_rep	three_prime_UTR	14157409	14157748	.	-	.	Parent=Os03t0363500-01
Chr03	irgsp1_rep	three_prime_UTR	14157246	14157321	.	-	.	Parent=Os03t0363500-01
Chr03	irgsp1_rep	three_prime_UTR	14157114	14157178	.	-	.	Parent=Os03t0363500-01
Chr03	irgsp1_rep	three_prime_UTR	14156016	14156695	.	-	.	Parent=Os03t0363500-01
Chr03	irgsp1_rep	three_prime_UTR	14155659	14155702	.	-	.	Parent=Os03t0363500-01
Chr03	irgsp1_rep	three_prime_UTR	14154801	14155423	.	-	.	Parent=Os03t0363500-01
Chr03	irgsp1_rep	three_prime_UTR	14154554	14154613	.	-	.	Parent=Os03t0363500-01
Chr03	irgsp1_rep	three_prime_UTR	14154331	14154445	.	-	.	Parent=Os03t0363500-01
Chr03	irgsp1_rep	three_prime_UTR	14153896	14154112	.	-	.	Parent=Os03t0363500-01
Chr03	irgsp1_rep	mRNA	14153874	14159169	.	-	.	ID=Os03t0363500-02;Name=Os03t0363500-02;Locus_id=Os03g0363500;Note=Similar to Sugar transporter-like protein.;Transcript_evidence=AK064996 (DDBJ%2C Best hit);ORF_evidence=E9N3N3 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J013001D21;Expression=AK064996;TENOR=Os03t0363500-02;KEGG=Os03t0363500-02
Chr03	irgsp1_rep	five_prime_UTR	14159153	14159169	.	-	.	Parent=Os03t0363500-02
Chr03	irgsp1_rep	CDS	14158805	14159152	.	-	0	Parent=Os03t0363500-02
Chr03	irgsp1_rep	CDS	14158594	14158656	.	-	0	Parent=Os03t0363500-02
Chr03	irgsp1_rep	CDS	14158072	14158161	.	-	0	Parent=Os03t0363500-02
Chr03	irgsp1_rep	CDS	14157933	14157992	.	-	0	Parent=Os03t0363500-02
Chr03	irgsp1_rep	CDS	14157782	14157847	.	-	0	Parent=Os03t0363500-02
Chr03	irgsp1_rep	CDS	14157409	14157474	.	-	0	Parent=Os03t0363500-02
Chr03	irgsp1_rep	CDS	14157246	14157321	.	-	0	Parent=Os03t0363500-02
Chr03	irgsp1_rep	CDS	14157114	14157178	.	-	2	Parent=Os03t0363500-02
Chr03	irgsp1_rep	CDS	14156603	14156695	.	-	0	Parent=Os03t0363500-02
Chr03	irgsp1_rep	CDS	14156215	14156295	.	-	0	Parent=Os03t0363500-02
Chr03	irgsp1_rep	CDS	14156016	14156100	.	-	0	Parent=Os03t0363500-02
Chr03	irgsp1_rep	CDS	14155659	14155702	.	-	2	Parent=Os03t0363500-02
Chr03	irgsp1_rep	CDS	14155361	14155423	.	-	0	Parent=Os03t0363500-02
Chr03	irgsp1_rep	CDS	14155191	14155250	.	-	0	Parent=Os03t0363500-02
Chr03	irgsp1_rep	CDS	14154801	14154854	.	-	0	Parent=Os03t0363500-02
Chr03	irgsp1_rep	CDS	14154554	14154613	.	-	0	Parent=Os03t0363500-02
Chr03	irgsp1_rep	CDS	14154331	14154445	.	-	0	Parent=Os03t0363500-02
Chr03	irgsp1_rep	CDS	14154000	14154112	.	-	2	Parent=Os03t0363500-02
Chr03	irgsp1_rep	three_prime_UTR	14153874	14153999	.	-	.	Parent=Os03t0363500-02
Chr03	irgsp1_rep	mRNA	14153895	14155218	.	-	.	ID=Os03t0363500-03;Name=Os03t0363500-03;Locus_id=Os03g0363500;Note=Similar to solute carrier family 2%2C facilitated glucose transporter member 8.;Transcript_evidence=AK062124 (DDBJ%2C Best hit);ORF_evidence=E9N3N3 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=001-045-D05;Expression=AK062124;TENOR=Os03t0363500-03;KEGG=Os03t0363500-03
Chr03	irgsp1_rep	five_prime_UTR	14155218	14155218	.	-	.	Parent=Os03t0363500-03
Chr03	irgsp1_rep	CDS	14155191	14155217	.	-	0	Parent=Os03t0363500-03
Chr03	irgsp1_rep	CDS	14154801	14154854	.	-	0	Parent=Os03t0363500-03
Chr03	irgsp1_rep	CDS	14154554	14154613	.	-	0	Parent=Os03t0363500-03
Chr03	irgsp1_rep	CDS	14154331	14154445	.	-	0	Parent=Os03t0363500-03
Chr03	irgsp1_rep	CDS	14154000	14154112	.	-	2	Parent=Os03t0363500-03
Chr03	irgsp1_rep	three_prime_UTR	14153895	14153999	.	-	.	Parent=Os03t0363500-03
Chr03	irgsp1_rep	mRNA	14165596	14170408	.	-	.	ID=Os03t0363600-01;Name=Os03t0363600-01;Locus_id=Os03g0363600;Note=Similar to Sugar transporter-like protein.;Transcript_evidence=AK106658 (DDBJ%2C Best hit);ORF_evidence=E9N3N3 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=002-113-G09;Expression=AK106658;TENOR=Os03t0363600-01;KEGG=Os03t0363600-01
Chr03	irgsp1_rep	five_prime_UTR	14170259	14170408	.	-	.	Parent=Os03t0363600-01
Chr03	irgsp1_rep	CDS	14169992	14170258	.	-	0	Parent=Os03t0363600-01
Chr03	irgsp1_rep	CDS	14169217	14169279	.	-	0	Parent=Os03t0363600-01
Chr03	irgsp1_rep	CDS	14169007	14169096	.	-	0	Parent=Os03t0363600-01
Chr03	irgsp1_rep	CDS	14168858	14168917	.	-	0	Parent=Os03t0363600-01
Chr03	irgsp1_rep	CDS	14168709	14168774	.	-	0	Parent=Os03t0363600-01
Chr03	irgsp1_rep	CDS	14168517	14168582	.	-	0	Parent=Os03t0363600-01
Chr03	irgsp1_rep	CDS	14168358	14168433	.	-	0	Parent=Os03t0363600-01
Chr03	irgsp1_rep	CDS	14168207	14168271	.	-	2	Parent=Os03t0363600-01
Chr03	irgsp1_rep	CDS	14167902	14167994	.	-	0	Parent=Os03t0363600-01
Chr03	irgsp1_rep	CDS	14167743	14167823	.	-	0	Parent=Os03t0363600-01
Chr03	irgsp1_rep	CDS	14167510	14167594	.	-	0	Parent=Os03t0363600-01
Chr03	irgsp1_rep	CDS	14167391	14167434	.	-	2	Parent=Os03t0363600-01
Chr03	irgsp1_rep	CDS	14167257	14167319	.	-	0	Parent=Os03t0363600-01
Chr03	irgsp1_rep	CDS	14167113	14167172	.	-	0	Parent=Os03t0363600-01
Chr03	irgsp1_rep	CDS	14166846	14166899	.	-	0	Parent=Os03t0363600-01
Chr03	irgsp1_rep	CDS	14166598	14166657	.	-	0	Parent=Os03t0363600-01
Chr03	irgsp1_rep	CDS	14166363	14166477	.	-	0	Parent=Os03t0363600-01
Chr03	irgsp1_rep	CDS	14165879	14166018	.	-	2	Parent=Os03t0363600-01
Chr03	irgsp1_rep	three_prime_UTR	14165596	14165878	.	-	.	Parent=Os03t0363600-01
Chr03	irgsp1_rep	mRNA	14174373	14176247	.	-	.	ID=Os03t0363700-00;Name=Os03t0363700-00;Locus_id=Os03g0363700;Oryzabase Gene Symbol Synonym(s)=PPR;Oryzabase Gene Name Synonym(s)=Pentatricopeptide repeat (PPR) protein;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=EU954511 (DDBJ);ORF_evidence=NP_001050167.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);Oryzabase=22508;TENOR=Os03t0363700-00;KEGG=Os03t0363700-00
Chr03	irgsp1_rep	five_prime_UTR	14176221	14176247	.	-	.	Parent=Os03t0363700-00
Chr03	irgsp1_rep	CDS	14174526	14176220	.	-	0	Parent=Os03t0363700-00
Chr03	irgsp1_rep	three_prime_UTR	14174373	14174525	.	-	.	Parent=Os03t0363700-00
Chr03	irgsp1_rep	mRNA	14176397	14181013	.	+	.	ID=Os03t0363800-01;Name=Os03t0363800-01;Locus_id=Os03g0363800;CGSNL Gene Symbol=SCL28;CGSNL Gene Name=SC35-LIKE PROTEIN 28;Oryzabase Gene Symbol Synonym(s)=Os-SCL28%2C OsSCL28;Oryzabase Gene Name Synonym(s)=SC35-like protein 28%2C SCL subfamily protein 28;Note=Similar to SC35-like splicing factor SCL28%2C 28 kD.;Transcript_evidence=AK103387 (DDBJ%2C Best hit);ORF_evidence=B6U3L0 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033127I18;Oryzabase=22744;Expression=AK103387;TENOR=Os03t0363800-01;KEGG=Os03t0363800-01
Chr03	irgsp1_rep	five_prime_UTR	14176397	14176487	.	+	.	Parent=Os03t0363800-01
Chr03	irgsp1_rep	CDS	14176488	14176705	.	+	0	Parent=Os03t0363800-01
Chr03	irgsp1_rep	CDS	14178181	14178258	.	+	1	Parent=Os03t0363800-01
Chr03	irgsp1_rep	CDS	14178630	14178794	.	+	1	Parent=Os03t0363800-01
Chr03	irgsp1_rep	CDS	14178910	14178977	.	+	1	Parent=Os03t0363800-01
Chr03	irgsp1_rep	CDS	14179058	14179097	.	+	2	Parent=Os03t0363800-01
Chr03	irgsp1_rep	CDS	14180418	14180580	.	+	1	Parent=Os03t0363800-01
Chr03	irgsp1_rep	three_prime_UTR	14180581	14180598	.	+	.	Parent=Os03t0363800-01
Chr03	irgsp1_rep	three_prime_UTR	14180698	14181013	.	+	.	Parent=Os03t0363800-01
Chr03	irgsp1_rep	mRNA	14178178	14180594	.	-	.	ID=Os03t0363850-00;Name=Os03t0363850-00;Locus_id=Os03g0363850;Note=Hypothetical protein.;Transcript_evidence=tplb0044h06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0363850-00
Chr03	irgsp1_rep	five_prime_UTR	14180143	14180594	.	-	.	Parent=Os03t0363850-00
Chr03	irgsp1_rep	CDS	14179924	14180142	.	-	0	Parent=Os03t0363850-00
Chr03	irgsp1_rep	three_prime_UTR	14178628	14179923	.	-	.	Parent=Os03t0363850-00
Chr03	irgsp1_rep	three_prime_UTR	14178178	14178256	.	-	.	Parent=Os03t0363850-00
Chr03	irgsp1_rep	mRNA	14183628	14188091	.	+	.	ID=Os03t0363900-01;Name=Os03t0363900-01;Locus_id=Os03g0363900;Note=Zinc finger%2C DHHC-type domain containing protein.;Transcript_evidence=AK066313 (DDBJ%2C Best hit);ORF_evidence=B6TSC2 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C DHHC-type%2C palmitoyltransferase (IPR001594);NIAS_FLcDNA=J013065E23;Expression=AK066313;TENOR=Os03t0363900-01;KEGG=Os03t0363900-01
Chr03	irgsp1_rep	five_prime_UTR	14183628	14183796	.	+	.	Parent=Os03t0363900-01
Chr03	irgsp1_rep	CDS	14183797	14183945	.	+	0	Parent=Os03t0363900-01
Chr03	irgsp1_rep	CDS	14184037	14184130	.	+	1	Parent=Os03t0363900-01
Chr03	irgsp1_rep	CDS	14185327	14185421	.	+	0	Parent=Os03t0363900-01
Chr03	irgsp1_rep	CDS	14185497	14185664	.	+	1	Parent=Os03t0363900-01
Chr03	irgsp1_rep	CDS	14185930	14186002	.	+	1	Parent=Os03t0363900-01
Chr03	irgsp1_rep	CDS	14186075	14186127	.	+	0	Parent=Os03t0363900-01
Chr03	irgsp1_rep	CDS	14186559	14186650	.	+	1	Parent=Os03t0363900-01
Chr03	irgsp1_rep	CDS	14186980	14187032	.	+	2	Parent=Os03t0363900-01
Chr03	irgsp1_rep	CDS	14187111	14187236	.	+	0	Parent=Os03t0363900-01
Chr03	irgsp1_rep	CDS	14187549	14187794	.	+	0	Parent=Os03t0363900-01
Chr03	irgsp1_rep	three_prime_UTR	14187795	14188091	.	+	.	Parent=Os03t0363900-01
Chr03	irgsp1_rep	mRNA	14183674	14187817	.	+	.	ID=Os03t0363900-02;Name=Os03t0363900-02;Locus_id=Os03g0363900;Note=Zinc finger%2C DHHC-type domain containing protein.;Transcript_evidence=AK066352 (DDBJ%2C Best hit);ORF_evidence=B6TSC2 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C DHHC-type%2C palmitoyltransferase (IPR001594);NIAS_FLcDNA=J013063O03;Expression=AK066352;TENOR=Os03t0363900-02;KEGG=Os03t0363900-02
Chr03	irgsp1_rep	five_prime_UTR	14183674	14183796	.	+	.	Parent=Os03t0363900-02
Chr03	irgsp1_rep	CDS	14183797	14183945	.	+	0	Parent=Os03t0363900-02
Chr03	irgsp1_rep	CDS	14184037	14184130	.	+	1	Parent=Os03t0363900-02
Chr03	irgsp1_rep	CDS	14185327	14185421	.	+	0	Parent=Os03t0363900-02
Chr03	irgsp1_rep	CDS	14185497	14185664	.	+	1	Parent=Os03t0363900-02
Chr03	irgsp1_rep	CDS	14185930	14186002	.	+	1	Parent=Os03t0363900-02
Chr03	irgsp1_rep	CDS	14186075	14186127	.	+	0	Parent=Os03t0363900-02
Chr03	irgsp1_rep	CDS	14186559	14186650	.	+	1	Parent=Os03t0363900-02
Chr03	irgsp1_rep	CDS	14186980	14187032	.	+	2	Parent=Os03t0363900-02
Chr03	irgsp1_rep	CDS	14187111	14187236	.	+	0	Parent=Os03t0363900-02
Chr03	irgsp1_rep	CDS	14187549	14187794	.	+	0	Parent=Os03t0363900-02
Chr03	irgsp1_rep	three_prime_UTR	14187795	14187817	.	+	.	Parent=Os03t0363900-02
Chr03	irgsp1_rep	mRNA	14188486	14192214	.	-	.	ID=Os03t0363950-00;Name=Os03t0363950-00;Locus_id=Os03g0363950;Note=Similar to nodulation protein-related.;Transcript_evidence=FP096010 (DDBJ);ORF_evidence=NP_190631.2 (RefSeq);GO=Molecular Function: sulfotransferase activity (GO:0008146);InterPro=Sulfotransferase domain (IPR000863);TENOR=Os03t0363950-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	14191861	14192214	.	-	.	Parent=Os03t0363950-00
Chr03	irgsp1_rep	five_prime_UTR	14191374	14191501	.	-	.	Parent=Os03t0363950-00
Chr03	irgsp1_rep	CDS	14191350	14191373	.	-	0	Parent=Os03t0363950-00
Chr03	irgsp1_rep	CDS	14191017	14191255	.	-	0	Parent=Os03t0363950-00
Chr03	irgsp1_rep	CDS	14190655	14190913	.	-	1	Parent=Os03t0363950-00
Chr03	irgsp1_rep	CDS	14189863	14190042	.	-	0	Parent=Os03t0363950-00
Chr03	irgsp1_rep	CDS	14189074	14189229	.	-	0	Parent=Os03t0363950-00
Chr03	irgsp1_rep	CDS	14188713	14188889	.	-	0	Parent=Os03t0363950-00
Chr03	irgsp1_rep	three_prime_UTR	14188486	14188712	.	-	.	Parent=Os03t0363950-00
Chr03	irgsp1_rep	mRNA	14196327	14199254	.	-	.	ID=Os03t0364000-01;Name=Os03t0364000-01;Locus_id=Os03g0364000;Note=Similar to ubiquitin-like protein.;Transcript_evidence=AK062527 (DDBJ%2C Best hit);ORF_evidence=NP_001152246.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin (IPR000626),Ubiquitin supergroup (IPR019955);NIAS_FLcDNA=001-104-D11;TENOR=Os03t0364000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	14199126	14199254	.	-	.	Parent=Os03t0364000-01
Chr03	irgsp1_rep	five_prime_UTR	14197552	14197554	.	-	.	Parent=Os03t0364000-01
Chr03	irgsp1_rep	CDS	14197366	14197551	.	-	0	Parent=Os03t0364000-01
Chr03	irgsp1_rep	CDS	14197246	14197285	.	-	0	Parent=Os03t0364000-01
Chr03	irgsp1_rep	CDS	14196681	14196742	.	-	2	Parent=Os03t0364000-01
Chr03	irgsp1_rep	three_prime_UTR	14196327	14196680	.	-	.	Parent=Os03t0364000-01
Chr03	irgsp1_rep	mRNA	14206981	14209160	.	+	.	ID=Os03t0364400-01;Name=Os03t0364400-01;Locus_id=Os03g0364400;RAP-DB Gene Symbol Synonym(s)=OsBBS1%2C OsRLCK109;RAP-DB Gene Name Synonym(s)=bilateral blade senescence 1%2C Receptor-like Cytoplasmic Kinase 109;CGSNL Gene Symbol=BBS1;CGSNL Gene Name=BILATERAL BLADE SENESCENCE 1;Oryzabase Gene Symbol Synonym(s)=OsRLCK109%2C RLCK109%2C OsBBS1%2C OSBBS1/OsRLCK109%2C PTK4%2C PTK4/BBS1%2C OsPTK4;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 109%2C bilateral blade senescence 1%2C Protein Tyrosine Kinase 4;Note=Receptor-like cytoplasmic kinase%2C Leaf senescence%2C Salt stress response;Transcript_evidence=AK066529;ORF_evidence=Q10KZ7;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),Protein kinase domain (IPR000719),Serine-threonine/tyrosine-protein kinase%2C catalytic domain (IPR001245),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J013073L01;Manual Curation=March 26%2C 2018;Literature_PMID=29572657;Oryzabase=18817;Expression=AK066529;TENOR=Os03t0364400-01;KEGG=Os03t0364400-01
Chr03	irgsp1_rep	five_prime_UTR	14206981	14207169	.	+	.	Parent=Os03t0364400-01
Chr03	irgsp1_rep	CDS	14207170	14207640	.	+	0	Parent=Os03t0364400-01
Chr03	irgsp1_rep	CDS	14207754	14207889	.	+	0	Parent=Os03t0364400-01
Chr03	irgsp1_rep	CDS	14207998	14208134	.	+	2	Parent=Os03t0364400-01
Chr03	irgsp1_rep	CDS	14208205	14208804	.	+	0	Parent=Os03t0364400-01
Chr03	irgsp1_rep	three_prime_UTR	14208805	14209160	.	+	.	Parent=Os03t0364400-01
Chr03	irgsp1_rep	mRNA	14207103	14209160	.	+	.	ID=Os03t0364400-02;Name=Os03t0364400-02;Locus_id=Os03g0364400;CGSNL Gene Symbol=BBS1;CGSNL Gene Name=BILATERAL BLADE SENESCENCE 1;Oryzabase Gene Symbol Synonym(s)=OsRLCK109%2C RLCK109%2C OsBBS1%2C OSBBS1/OsRLCK109%2C PTK4%2C PTK4/BBS1%2C OsPTK4;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 109%2C bilateral blade senescence 1%2C Protein Tyrosine Kinase 4;Note=Similar to Phytosulfokine receptor-like protein.;Transcript_evidence=AK071963 (DDBJ%2C Best hit);ORF_evidence=C6ZRV7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J013078M18;Oryzabase=18817;Expression=AK071963;TENOR=Os03t0364400-02;KEGG=Os03t0364400-02
Chr03	irgsp1_rep	five_prime_UTR	14207103	14207169	.	+	.	Parent=Os03t0364400-02
Chr03	irgsp1_rep	CDS	14207170	14207640	.	+	0	Parent=Os03t0364400-02
Chr03	irgsp1_rep	CDS	14207754	14207889	.	+	0	Parent=Os03t0364400-02
Chr03	irgsp1_rep	CDS	14207998	14208134	.	+	2	Parent=Os03t0364400-02
Chr03	irgsp1_rep	CDS	14208205	14208804	.	+	0	Parent=Os03t0364400-02
Chr03	irgsp1_rep	three_prime_UTR	14208805	14209160	.	+	.	Parent=Os03t0364400-02
Chr03	irgsp1_rep	mRNA	14213209	14216273	.	-	.	ID=Os03t0364500-01;Name=Os03t0364500-01;Locus_id=Os03g0364500;Note=Similar to plectin-related.;Transcript_evidence=AK108428 (DDBJ%2C Best hit);ORF_evidence=NP_850085.1 (RefSeq);NIAS_FLcDNA=002-143-A09;Expression=AK108428;TENOR=Os03t0364500-01;KEGG=Os03t0364500-01
Chr03	irgsp1_rep	CDS	14216220	14216273	.	-	0	Parent=Os03t0364500-01
Chr03	irgsp1_rep	CDS	14215084	14215264	.	-	0	Parent=Os03t0364500-01
Chr03	irgsp1_rep	CDS	14214594	14214710	.	-	2	Parent=Os03t0364500-01
Chr03	irgsp1_rep	CDS	14214454	14214512	.	-	2	Parent=Os03t0364500-01
Chr03	irgsp1_rep	CDS	14213982	14214116	.	-	0	Parent=Os03t0364500-01
Chr03	irgsp1_rep	CDS	14213735	14213884	.	-	0	Parent=Os03t0364500-01
Chr03	irgsp1_rep	CDS	14213589	14213627	.	-	0	Parent=Os03t0364500-01
Chr03	irgsp1_rep	three_prime_UTR	14213209	14213588	.	-	.	Parent=Os03t0364500-01
Chr03	irgsp1_rep	mRNA	14233207	14236034	.	+	.	ID=Os03t0364700-01;Name=Os03t0364700-01;Locus_id=Os03g0364700;Note=Transcription elongation factor%2C TFIIS/CRSP70%2C N-terminal domain containing protein.;Transcript_evidence=AK120631 (DDBJ%2C Best hit);ORF_evidence=B9F7I2 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Transcription factor IIS%2C N-terminal (IPR017923);NIAS_FLcDNA=J013153H08;Expression=AK120631;TENOR=Os03t0364700-01;KEGG=Os03t0364700-01
Chr03	irgsp1_rep	five_prime_UTR	14233207	14233208	.	+	.	Parent=Os03t0364700-01
Chr03	irgsp1_rep	CDS	14233209	14233877	.	+	0	Parent=Os03t0364700-01
Chr03	irgsp1_rep	CDS	14233970	14234038	.	+	0	Parent=Os03t0364700-01
Chr03	irgsp1_rep	CDS	14234117	14234203	.	+	0	Parent=Os03t0364700-01
Chr03	irgsp1_rep	three_prime_UTR	14234204	14234394	.	+	.	Parent=Os03t0364700-01
Chr03	irgsp1_rep	three_prime_UTR	14234498	14234619	.	+	.	Parent=Os03t0364700-01
Chr03	irgsp1_rep	three_prime_UTR	14234778	14234805	.	+	.	Parent=Os03t0364700-01
Chr03	irgsp1_rep	three_prime_UTR	14234891	14235225	.	+	.	Parent=Os03t0364700-01
Chr03	irgsp1_rep	three_prime_UTR	14235318	14235417	.	+	.	Parent=Os03t0364700-01
Chr03	irgsp1_rep	three_prime_UTR	14235598	14236034	.	+	.	Parent=Os03t0364700-01
Chr03	irgsp1_rep	mRNA	14249197	14271743	.	+	.	ID=Os03t0365000-00;Name=Os03t0365000-00;Locus_id=Os03g0365000;CGSNL Gene Symbol=GELP47;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 47;Oryzabase Gene Symbol Synonym(s)=OsGELP47;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 47;Note=Similar to GDSL-like Lipase/Acylhydrolase family protein.;Transcript_evidence=BT067902 (DDBJ);ORF_evidence=Q10KZ0 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);Oryzabase=10997;TENOR=Os03t0365000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	14249197	14249452	.	+	0	Parent=Os03t0365000-00
Chr03	irgsp1_rep	CDS	14268735	14268956	.	+	2	Parent=Os03t0365000-00
Chr03	irgsp1_rep	CDS	14271110	14271261	.	+	2	Parent=Os03t0365000-00
Chr03	irgsp1_rep	CDS	14271384	14271743	.	+	0	Parent=Os03t0365000-00
Chr03	irgsp1_rep	mRNA	14253559	14253841	.	-	.	ID=Os03t0365100-00;Name=Os03t0365100-00;Locus_id=Os03g0365100;Note=Non-protein coding transcript.;Transcript_evidence=CT834365 (DDBJ%2C Secondary hit);ORF_evidence=NONE;TENOR=Os03t0365100-00
Chr03	irgsp1_rep	exon	14253559	14253841	.	-	.	Parent=Os03t0365100-00
Chr03	irgsp1_rep	mRNA	14258481	14258763	.	+	.	ID=Os03t0365150-00;Name=Os03t0365150-00;Locus_id=Os03g0365150;Note=Non-protein coding transcript.;Transcript_evidence=CT834365 (DDBJ%2C Secondary hit);ORF_evidence=NONE;TENOR=Os03t0365150-00
Chr03	irgsp1_rep	exon	14258481	14258763	.	+	.	Parent=Os03t0365150-00
Chr03	irgsp1_rep	mRNA	14258562	14264654	.	-	.	ID=Os03t0365200-01;Name=Os03t0365200-01;Locus_id=Os03g0365200;Note=Similar to Ulp1 protease family%2C C-terminal catalytic domain containing protein.;Transcript_evidence=AK099802 (DDBJ%2C Best hit);ORF_evidence=Q10KZ4 (UniProt);NIAS_FLcDNA=J013098A22;TENOR=Os03t0365200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	14262579	14264654	.	-	.	Parent=Os03t0365200-01
Chr03	irgsp1_rep	CDS	14262375	14262578	.	-	0	Parent=Os03t0365200-01
Chr03	irgsp1_rep	CDS	14262233	14262284	.	-	0	Parent=Os03t0365200-01
Chr03	irgsp1_rep	CDS	14260687	14260820	.	-	2	Parent=Os03t0365200-01
Chr03	irgsp1_rep	CDS	14260487	14260600	.	-	0	Parent=Os03t0365200-01
Chr03	irgsp1_rep	CDS	14260297	14260416	.	-	0	Parent=Os03t0365200-01
Chr03	irgsp1_rep	CDS	14259896	14259910	.	-	0	Parent=Os03t0365200-01
Chr03	irgsp1_rep	three_prime_UTR	14259739	14259895	.	-	.	Parent=Os03t0365200-01
Chr03	irgsp1_rep	three_prime_UTR	14259560	14259658	.	-	.	Parent=Os03t0365200-01
Chr03	irgsp1_rep	three_prime_UTR	14259342	14259473	.	-	.	Parent=Os03t0365200-01
Chr03	irgsp1_rep	three_prime_UTR	14259167	14259270	.	-	.	Parent=Os03t0365200-01
Chr03	irgsp1_rep	three_prime_UTR	14258884	14259073	.	-	.	Parent=Os03t0365200-01
Chr03	irgsp1_rep	three_prime_UTR	14258562	14258788	.	-	.	Parent=Os03t0365200-01
Chr03	irgsp1_rep	mRNA	14264182	14265684	.	+	.	ID=Os03t0365250-01;Name=Os03t0365250-01;Locus_id=Os03g0365250;Note=Conserved hypothetical protein.;Transcript_evidence=AK066283 (DDBJ%2C Best hit);ORF_evidence=A2YVC4 (UniProt);NIAS_FLcDNA=J013063D15;TENOR=Os03t0365250-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	14264182	14264702	.	+	.	Parent=Os03t0365250-01
Chr03	irgsp1_rep	CDS	14264703	14264876	.	+	0	Parent=Os03t0365250-01
Chr03	irgsp1_rep	three_prime_UTR	14264877	14265684	.	+	.	Parent=Os03t0365250-01
Chr03	irgsp1_rep	mRNA	14279337	14282676	.	+	.	ID=Os03t0365700-01;Name=Os03t0365700-01;Locus_id=Os03g0365700;Note=Hypothetical conserved gene.;Transcript_evidence=AK288922 (DDBJ%2C Best hit);ORF_evidence=B8AQ61 (UniProt);NIAS_FLcDNA=J090081M23;TENOR=Os03t0365700-01;KEGG=Os03t0365700-01
Chr03	irgsp1_rep	five_prime_UTR	14279337	14280391	.	+	.	Parent=Os03t0365700-01
Chr03	irgsp1_rep	CDS	14280392	14280694	.	+	0	Parent=Os03t0365700-01
Chr03	irgsp1_rep	three_prime_UTR	14280695	14282676	.	+	.	Parent=Os03t0365700-01
Chr03	irgsp1_rep	mRNA	14289593	14293249	.	+	.	ID=Os03t0365800-01;Name=Os03t0365800-01;Locus_id=Os03g0365800;CGSNL Gene Symbol=GELP49;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 49;Oryzabase Gene Symbol Synonym(s)=OsGELP49;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 49;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK063672 (DDBJ%2C Best hit);ORF_evidence=Q10KY9 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=001-119-D08;Oryzabase=10999;Expression=AK063672;TENOR=Os03t0365800-01;KEGG=Os03t0365800-01
Chr03	irgsp1_rep	five_prime_UTR	14289593	14289620	.	+	.	Parent=Os03t0365800-01
Chr03	irgsp1_rep	CDS	14289621	14289912	.	+	0	Parent=Os03t0365800-01
Chr03	irgsp1_rep	CDS	14290020	14290241	.	+	2	Parent=Os03t0365800-01
Chr03	irgsp1_rep	CDS	14292196	14292347	.	+	2	Parent=Os03t0365800-01
Chr03	irgsp1_rep	CDS	14292465	14292738	.	+	0	Parent=Os03t0365800-01
Chr03	irgsp1_rep	CDS	14292860	14293083	.	+	2	Parent=Os03t0365800-01
Chr03	irgsp1_rep	three_prime_UTR	14293084	14293249	.	+	.	Parent=Os03t0365800-01
Chr03	irgsp1_rep	mRNA	14294560	14295336	.	+	.	ID=Os03t0365850-00;Name=Os03t0365850-00;Locus_id=Os03g0365850;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10KY9 (UniProt);TENOR=Os03t0365850-00;KEGG=Os03t0365850-00
Chr03	irgsp1_rep	CDS	14294560	14294860	.	+	0	Parent=Os03t0365850-00
Chr03	irgsp1_rep	CDS	14294961	14295182	.	+	2	Parent=Os03t0365850-00
Chr03	irgsp1_rep	CDS	14295293	14295336	.	+	2	Parent=Os03t0365850-00
Chr03	irgsp1_rep	mRNA	14295600	14297898	.	+	.	ID=Os03t0365900-01;Name=Os03t0365900-01;Locus_id=Os03g0365900;CGSNL Gene Symbol=GELP50;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 50;Oryzabase Gene Symbol Synonym(s)=OsGELP50%2C OsGELP50a%2C OsGELP50b;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 50;Note=Similar to GDSL-like Lipase/Acylhydrolase family protein.;Transcript_evidence=AK069388 (DDBJ%2C Best hit);ORF_evidence=Q10KZ0 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=J023012H01;Oryzabase=11000;TENOR=Os03t0365900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	14295600	14295644	.	+	.	Parent=Os03t0365900-01
Chr03	irgsp1_rep	CDS	14295645	14295678	.	+	0	Parent=Os03t0365900-01
Chr03	irgsp1_rep	CDS	14296052	14296203	.	+	2	Parent=Os03t0365900-01
Chr03	irgsp1_rep	CDS	14296288	14296558	.	+	0	Parent=Os03t0365900-01
Chr03	irgsp1_rep	CDS	14297460	14297692	.	+	2	Parent=Os03t0365900-01
Chr03	irgsp1_rep	three_prime_UTR	14297693	14297898	.	+	.	Parent=Os03t0365900-01
Chr03	irgsp1_rep	mRNA	14298449	14301345	.	-	.	ID=Os03t0366000-01;Name=Os03t0366000-01;Locus_id=Os03g0366000;Note=Similar to Chaperonin.;Transcript_evidence=AK241807 (DDBJ%2C Best hit);ORF_evidence=A6N0I3 (UniProt);GO=Biological Process: protein folding (GO:0006457),Cellular Component: cytoplasm (GO:0005737);InterPro=GroES-like (IPR011032),Chaperonin Cpn10 (IPR020818);NIAS_FLcDNA=J065210A12;TENOR=Os03t0366000-01;KEGG=Os03t0366000-01
Chr03	irgsp1_rep	five_prime_UTR	14301253	14301345	.	-	.	Parent=Os03t0366000-01
Chr03	irgsp1_rep	CDS	14301145	14301252	.	-	0	Parent=Os03t0366000-01
Chr03	irgsp1_rep	CDS	14299712	14299851	.	-	0	Parent=Os03t0366000-01
Chr03	irgsp1_rep	CDS	14298671	14298719	.	-	1	Parent=Os03t0366000-01
Chr03	irgsp1_rep	three_prime_UTR	14298449	14298670	.	-	.	Parent=Os03t0366000-01
Chr03	irgsp1_rep	mRNA	14302323	14302989	.	-	.	ID=Os03t0366100-01;Name=Os03t0366100-01;Locus_id=Os03g0366100;Oryzabase Gene Symbol Synonym(s)=OsCLE303%2C CLE303;Oryzabase Gene Name Synonym(s)=CLV3/ESR-related 303%2C CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 303;Note=Similar to OSIGBa0132E09-OSIGBa0108L24.9 protein.;Transcript_evidence=AK103302 (DDBJ%2C Best hit);ORF_evidence=Q01HZ0 (UniProt);NIAS_FLcDNA=J033125C23;Oryzabase=14230;Expression=AK103302;TENOR=Os03t0366100-01;KEGG=Os03t0366100-01
Chr03	irgsp1_rep	five_prime_UTR	14302959	14302989	.	-	.	Parent=Os03t0366100-01
Chr03	irgsp1_rep	CDS	14302626	14302958	.	-	0	Parent=Os03t0366100-01
Chr03	irgsp1_rep	three_prime_UTR	14302323	14302625	.	-	.	Parent=Os03t0366100-01
Chr03	irgsp1_rep	mRNA	14321293	14323202	.	+	.	ID=Os03t0366200-01;Name=Os03t0366200-01;Locus_id=Os03g0366200;CGSNL Gene Symbol=CRK1;CGSNL Gene Name=CDPK-RELATED KINASE 1;Oryzabase Gene Symbol Synonym(s)=OsCRK1%2C OsCBK%2C CBK;Oryzabase Gene Name Synonym(s)=CDPK-related kinase 1%2C Ca2+/calmodulin (CaM)-binding protein kinase%2C calmodulin-binding kinase;Note=Similar to Calcium/calmodulin-dependent serine/threonine-protein kinase 1.;Transcript_evidence=AK059466 (DDBJ%2C Best hit);ORF_evidence=Q10KY3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),EF-hand-like domain (IPR011992),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-028-D08;Oryzabase=10475;Expression=AK059466;TENOR=Os03t0366200-01;KEGG=Os03t0366200-01 (EC:2.7.11.17)
Chr03	irgsp1_rep	CDS	14321293	14321572	.	+	0	Parent=Os03t0366200-01
Chr03	irgsp1_rep	CDS	14321659	14321771	.	+	2	Parent=Os03t0366200-01
Chr03	irgsp1_rep	CDS	14322214	14322321	.	+	0	Parent=Os03t0366200-01
Chr03	irgsp1_rep	CDS	14322393	14322455	.	+	0	Parent=Os03t0366200-01
Chr03	irgsp1_rep	CDS	14322537	14322704	.	+	0	Parent=Os03t0366200-01
Chr03	irgsp1_rep	CDS	14322786	14322923	.	+	0	Parent=Os03t0366200-01
Chr03	irgsp1_rep	three_prime_UTR	14322924	14323202	.	+	.	Parent=Os03t0366200-01
Chr03	irgsp1_rep	mRNA	14323784	14326412	.	-	.	ID=Os03t0366350-01;Name=Os03t0366350-01;Locus_id=Os03g0366350;Oryzabase Gene Symbol Synonym(s)=OsFbox141%2C Os_F0122;Oryzabase Gene Name Synonym(s)=F-box protein 141;Note=Similar to F-box domain containing protein.;Transcript_evidence=AK287712 (DDBJ%2C Best hit);ORF_evidence=NP_001173436.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J065133F02;Oryzabase=16931;TENOR=Os03t0366350-01;KEGG=Os03t0366350-01
Chr03	irgsp1_rep	five_prime_UTR	14326344	14326412	.	-	.	Parent=Os03t0366350-01
Chr03	irgsp1_rep	CDS	14326197	14326343	.	-	0	Parent=Os03t0366350-01
Chr03	irgsp1_rep	CDS	14324191	14325678	.	-	0	Parent=Os03t0366350-01
Chr03	irgsp1_rep	three_prime_UTR	14323784	14324190	.	-	.	Parent=Os03t0366350-01
Chr03	irgsp1_rep	mRNA	14337091	14341306	.	-	.	ID=Os03t0366525-00;Name=Os03t0366525-00;Locus_id=Os03g0366525;Note=Hypothetical protein.;Transcript_evidence=tplb0059a15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0366525-00
Chr03	irgsp1_rep	five_prime_UTR	14341101	14341306	.	-	.	Parent=Os03t0366525-00
Chr03	irgsp1_rep	five_prime_UTR	14340130	14340358	.	-	.	Parent=Os03t0366525-00
Chr03	irgsp1_rep	five_prime_UTR	14339047	14339171	.	-	.	Parent=Os03t0366525-00
Chr03	irgsp1_rep	five_prime_UTR	14338636	14338860	.	-	.	Parent=Os03t0366525-00
Chr03	irgsp1_rep	five_prime_UTR	14338385	14338552	.	-	.	Parent=Os03t0366525-00
Chr03	irgsp1_rep	five_prime_UTR	14337526	14337620	.	-	.	Parent=Os03t0366525-00
Chr03	irgsp1_rep	CDS	14337091	14337525	.	-	0	Parent=Os03t0366525-00
Chr03	irgsp1_rep	mRNA	14337121	14341708	.	+	.	ID=Os03t0366700-01;Name=Os03t0366700-01;Locus_id=Os03g0366700;Note=Similar to predicted protein.;Transcript_evidence=AK240950 (DDBJ%2C Best hit);ORF_evidence=B8AQ68 (UniProt);NIAS_FLcDNA=J065043N22;TENOR=Os03t0366700-01;KEGG=Os03t0366700-01
Chr03	irgsp1_rep	five_prime_UTR	14337121	14337141	.	+	.	Parent=Os03t0366700-01
Chr03	irgsp1_rep	CDS	14337142	14337476	.	+	0	Parent=Os03t0366700-01
Chr03	irgsp1_rep	CDS	14338465	14338554	.	+	1	Parent=Os03t0366700-01
Chr03	irgsp1_rep	CDS	14338638	14338868	.	+	1	Parent=Os03t0366700-01
Chr03	irgsp1_rep	CDS	14339063	14339165	.	+	1	Parent=Os03t0366700-01
Chr03	irgsp1_rep	CDS	14340123	14340352	.	+	0	Parent=Os03t0366700-01
Chr03	irgsp1_rep	CDS	14341097	14341295	.	+	1	Parent=Os03t0366700-01
Chr03	irgsp1_rep	three_prime_UTR	14341296	14341708	.	+	.	Parent=Os03t0366700-01
Chr03	irgsp1_rep	mRNA	14342679	14345575	.	-	.	ID=Os03t0366800-01;Name=Os03t0366800-01;Locus_id=Os03g0366800;RAP-DB Gene Symbol Synonym(s)=OsHsfB4d;RAP-DB Gene Name Synonym(s)=Heat shock factor B4d;CGSNL Gene Symbol=HSFB4D;CGSNL Gene Name=HEAT STRESS TRANSCRIPTION FACTOR B4D;Oryzabase Gene Symbol Synonym(s)=OsHsfB4d%2C HSfB4d%2C OsHsf-10%2C HSF10%2C OsHSF10;Oryzabase Gene Name Synonym(s)=Heat stress transcription factor B4d%2C HEAT STRESS TRANSCRIPTION FACTOR B4d%2C Heat stress transcription factor 10;Note=Class B heat shock factor%2C Mediation of bacterial leaf streak (BLS) and bacterial blight (BB) resistance;Transcript_evidence=Inferred from literature;ORF_evidence=Q10KX8;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA-binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Cellular Component: nucleus (GO:0005634);InterPro=Winged helix-like DNA-binding domain superfamily (IPR036388),Winged helix DNA-binding domain superfamily (IPR036390),Heat shock factor (HSF)-type%2C DNA-binding (IPR000232);Manual Curation=May 29%2C 2020;Literature_PMID=32462553;Oryzabase=8567;TENOR=Os03t0366800-00
Chr03	irgsp1_rep	five_prime_UTR	14345344	14345575	.	-	.	Parent=Os03t0366800-01
Chr03	irgsp1_rep	CDS	14345059	14345343	.	-	0	Parent=Os03t0366800-01
Chr03	irgsp1_rep	CDS	14342976	14343608	.	-	0	Parent=Os03t0366800-01
Chr03	irgsp1_rep	three_prime_UTR	14342679	14342975	.	-	.	Parent=Os03t0366800-01
Chr03	irgsp1_rep	mRNA	14357987	14359135	.	-	.	ID=Os03t0366900-01;Name=Os03t0366900-01;Locus_id=Os03g0366900;Note=Nucleic acid-binding%2C OB-fold domain containing protein.;Transcript_evidence=AK071364 (DDBJ%2C Best hit);ORF_evidence=NP_001151468.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Nucleic acid binding%2C OB-fold%2C tRNA/helicase-type (IPR004365),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=J023098J07;Expression=AK071364;TENOR=Os03t0366900-01;KEGG=Os03t0366900-01
Chr03	irgsp1_rep	five_prime_UTR	14358865	14359135	.	-	.	Parent=Os03t0366900-01
Chr03	irgsp1_rep	five_prime_UTR	14358725	14358734	.	-	.	Parent=Os03t0366900-01
Chr03	irgsp1_rep	CDS	14358242	14358724	.	-	0	Parent=Os03t0366900-01
Chr03	irgsp1_rep	three_prime_UTR	14357987	14358241	.	-	.	Parent=Os03t0366900-01
Chr03	irgsp1_rep	mRNA	14359332	14370736	.	+	.	ID=Os03t0367000-01;Name=Os03t0367000-01;Locus_id=Os03g0367000;Oryzabase Gene Symbol Synonym(s)=OsFKBP72;Oryzabase Gene Name Synonym(s)=FK506 binding protein 72;Note=Similar to Pasticcino 1-A.;Transcript_evidence=AK122008 (DDBJ%2C Best hit);ORF_evidence=NP_001148950.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type%2C domain (IPR001179),Tetratricopeptide TPR-1 (IPR001440),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734),Elongated TPR repeat-containing domain (IPR023114),Peptidyl-prolyl cis-trans isomerase%2C FKBP-type (IPR023566);NIAS_FLcDNA=J033111D01;Oryzabase=10050;Expression=AK122008;TENOR=Os03t0367000-01;KEGG=Os03t0367000-01
Chr03	irgsp1_rep	five_prime_UTR	14359332	14359563	.	+	.	Parent=Os03t0367000-01
Chr03	irgsp1_rep	CDS	14359564	14359652	.	+	0	Parent=Os03t0367000-01
Chr03	irgsp1_rep	CDS	14359843	14359927	.	+	1	Parent=Os03t0367000-01
Chr03	irgsp1_rep	CDS	14360810	14360879	.	+	0	Parent=Os03t0367000-01
Chr03	irgsp1_rep	CDS	14361569	14361666	.	+	2	Parent=Os03t0367000-01
Chr03	irgsp1_rep	CDS	14361818	14361940	.	+	0	Parent=Os03t0367000-01
Chr03	irgsp1_rep	CDS	14363031	14363063	.	+	0	Parent=Os03t0367000-01
Chr03	irgsp1_rep	CDS	14363601	14363659	.	+	0	Parent=Os03t0367000-01
Chr03	irgsp1_rep	CDS	14364238	14364319	.	+	1	Parent=Os03t0367000-01
Chr03	irgsp1_rep	CDS	14365156	14365314	.	+	0	Parent=Os03t0367000-01
Chr03	irgsp1_rep	CDS	14365875	14365932	.	+	0	Parent=Os03t0367000-01
Chr03	irgsp1_rep	CDS	14366640	14366788	.	+	2	Parent=Os03t0367000-01
Chr03	irgsp1_rep	CDS	14367242	14367339	.	+	0	Parent=Os03t0367000-01
Chr03	irgsp1_rep	CDS	14367413	14367482	.	+	1	Parent=Os03t0367000-01
Chr03	irgsp1_rep	CDS	14367927	14367986	.	+	0	Parent=Os03t0367000-01
Chr03	irgsp1_rep	CDS	14368722	14368778	.	+	0	Parent=Os03t0367000-01
Chr03	irgsp1_rep	CDS	14369086	14369154	.	+	0	Parent=Os03t0367000-01
Chr03	irgsp1_rep	CDS	14369324	14369401	.	+	0	Parent=Os03t0367000-01
Chr03	irgsp1_rep	CDS	14369835	14369936	.	+	0	Parent=Os03t0367000-01
Chr03	irgsp1_rep	CDS	14370042	14370113	.	+	0	Parent=Os03t0367000-01
Chr03	irgsp1_rep	CDS	14370200	14370487	.	+	0	Parent=Os03t0367000-01
Chr03	irgsp1_rep	three_prime_UTR	14370488	14370736	.	+	.	Parent=Os03t0367000-01
Chr03	irgsp1_rep	mRNA	14359420	14370736	.	+	.	ID=Os03t0367000-02;Name=Os03t0367000-02;Locus_id=Os03g0367000;Oryzabase Gene Symbol Synonym(s)=OsFKBP72;Oryzabase Gene Name Synonym(s)=FK506 binding protein 72;Note=Hypothetical conserved gene.;Transcript_evidence=AK065282 (DDBJ%2C Best hit);ORF_evidence=F2D209 (UniProt);GO=Biological Process: protein folding (GO:0006457);InterPro=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type%2C domain (IPR001179),Peptidyl-prolyl cis-trans isomerase%2C FKBP-type (IPR023566);NIAS_FLcDNA=J013002M02;Oryzabase=10050;Expression=AK065282;TENOR=Os03t0367000-02;KEGG=Os03t0367000-02 (EC:5.2.1.8)
Chr03	irgsp1_rep	five_prime_UTR	14359420	14359563	.	+	.	Parent=Os03t0367000-02
Chr03	irgsp1_rep	CDS	14359564	14359652	.	+	0	Parent=Os03t0367000-02
Chr03	irgsp1_rep	CDS	14359843	14359927	.	+	1	Parent=Os03t0367000-02
Chr03	irgsp1_rep	CDS	14360810	14360879	.	+	0	Parent=Os03t0367000-02
Chr03	irgsp1_rep	CDS	14361569	14361666	.	+	2	Parent=Os03t0367000-02
Chr03	irgsp1_rep	CDS	14361818	14361940	.	+	0	Parent=Os03t0367000-02
Chr03	irgsp1_rep	CDS	14363031	14363063	.	+	0	Parent=Os03t0367000-02
Chr03	irgsp1_rep	CDS	14363601	14363659	.	+	0	Parent=Os03t0367000-02
Chr03	irgsp1_rep	CDS	14364238	14364319	.	+	1	Parent=Os03t0367000-02
Chr03	irgsp1_rep	CDS	14365151	14365237	.	+	0	Parent=Os03t0367000-02
Chr03	irgsp1_rep	three_prime_UTR	14365238	14365314	.	+	.	Parent=Os03t0367000-02
Chr03	irgsp1_rep	three_prime_UTR	14365875	14365932	.	+	.	Parent=Os03t0367000-02
Chr03	irgsp1_rep	three_prime_UTR	14366640	14366788	.	+	.	Parent=Os03t0367000-02
Chr03	irgsp1_rep	three_prime_UTR	14367242	14367339	.	+	.	Parent=Os03t0367000-02
Chr03	irgsp1_rep	three_prime_UTR	14367413	14367482	.	+	.	Parent=Os03t0367000-02
Chr03	irgsp1_rep	three_prime_UTR	14367927	14367986	.	+	.	Parent=Os03t0367000-02
Chr03	irgsp1_rep	three_prime_UTR	14368722	14368778	.	+	.	Parent=Os03t0367000-02
Chr03	irgsp1_rep	three_prime_UTR	14369086	14369154	.	+	.	Parent=Os03t0367000-02
Chr03	irgsp1_rep	three_prime_UTR	14369324	14369936	.	+	.	Parent=Os03t0367000-02
Chr03	irgsp1_rep	three_prime_UTR	14370042	14370113	.	+	.	Parent=Os03t0367000-02
Chr03	irgsp1_rep	three_prime_UTR	14370200	14370736	.	+	.	Parent=Os03t0367000-02
Chr03	irgsp1_rep	mRNA	14381298	14382935	.	+	.	ID=Os03t0367101-00;Name=Os03t0367101-00;Locus_id=Os03g0367101;CGSNL Gene Symbol=CYP75A11;CGSNL Gene Name=P-450 75A11;Oryzabase Gene Symbol Synonym(s)=OsCYP75A11;Oryzabase Gene Name Synonym(s)=CytoChrome P450 75A11%2C "flavonoid 3'%2C 5'-hydroxylase 1";Note=Similar to cytoChrome P450 flavonoid 3'%2C5'-hydroxylase.;Transcript_evidence=CT835223 (DDBJ%2C Best hit);ORF_evidence=Q84NG3 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);Oryzabase=20535;TENOR=Os03t0367101-00
Chr03	irgsp1_rep	five_prime_UTR	14381298	14381350	.	+	.	Parent=Os03t0367101-00
Chr03	irgsp1_rep	CDS	14381351	14381985	.	+	0	Parent=Os03t0367101-00
Chr03	irgsp1_rep	CDS	14382687	14382935	.	+	1	Parent=Os03t0367101-00
Chr03	irgsp1_rep	mRNA	14386783	14387406	.	-	.	ID=Os03t0367150-00;Name=Os03t0367150-00;Locus_id=Os03g0367150;Note=Hypothetical protein.;Transcript_evidence=EU942896 (DDBJ);ORF_evidence=longestORF;Oryzabase=23286;TENOR=Os03t0367150-00
Chr03	irgsp1_rep	five_prime_UTR	14387405	14387406	.	-	.	Parent=Os03t0367150-00
Chr03	irgsp1_rep	CDS	14386784	14387404	.	-	0	Parent=Os03t0367150-00
Chr03	irgsp1_rep	three_prime_UTR	14386783	14386783	.	-	.	Parent=Os03t0367150-00
Chr03	irgsp1_rep	mRNA	14387290	14387596	.	+	.	ID=Os03t0367200-01;Name=Os03t0367200-01;Locus_id=Os03g0367200;CGSNL Gene Symbol=CYP75A11;CGSNL Gene Name=P-450 75A11;Oryzabase Gene Symbol Synonym(s)=OsCYP75A11;Oryzabase Gene Name Synonym(s)=CytoChrome P450 75A11%2C "flavonoid 3'%2C 5'-hydroxylase 1";Note=Similar to Flavonoid 3'%2C5'-hydroxylase (EC 1.14.13.88) (F3'5'H) (CytoChrome P450 75A2) (CYPLXXVA2) (P-450EG1).;Transcript_evidence=AK060297 (DDBJ%2C Best hit);ORF_evidence=D9N1C2 (UniProt);NIAS_FLcDNA=001-006-E08;Oryzabase=20535;Expression=AK060297;TENOR=Os03t0367200-01;KEGG=Os03t0367200-01 (EC:1.14.13.88)
Chr03	irgsp1_rep	five_prime_UTR	14387290	14387290	.	+	.	Parent=Os03t0367200-01
Chr03	irgsp1_rep	CDS	14387291	14387428	.	+	0	Parent=Os03t0367200-01
Chr03	irgsp1_rep	three_prime_UTR	14387429	14387596	.	+	.	Parent=Os03t0367200-01
Chr03	irgsp1_rep	mRNA	14424593	14427858	.	+	.	ID=Os03t0367800-01;Name=Os03t0367800-01;Locus_id=Os03g0367800;CGSNL Gene Symbol=DLN87;CGSNL Gene Name=DLN REPRESSOR 87;Oryzabase Gene Symbol Synonym(s)=OsDLN87;Oryzabase Gene Name Synonym(s)=DLN repressor 87%2C DLN motif protein 87;Note=Similar to Zinc finger HIT domain-containing protein 1.;Transcript_evidence=AK108742 (DDBJ%2C Best hit);ORF_evidence=B6T4Y0 (UniProt);InterPro=Zinc finger%2C HIT-type (IPR007529);NIAS_FLcDNA=002-150-E06;Oryzabase=23183;TENOR=Os03t0367800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	14424593	14424678	.	+	.	Parent=Os03t0367800-01
Chr03	irgsp1_rep	CDS	14424679	14424792	.	+	0	Parent=Os03t0367800-01
Chr03	irgsp1_rep	CDS	14425870	14425975	.	+	0	Parent=Os03t0367800-01
Chr03	irgsp1_rep	CDS	14427235	14427338	.	+	2	Parent=Os03t0367800-01
Chr03	irgsp1_rep	CDS	14427481	14427684	.	+	0	Parent=Os03t0367800-01
Chr03	irgsp1_rep	three_prime_UTR	14427685	14427690	.	+	.	Parent=Os03t0367800-01
Chr03	irgsp1_rep	three_prime_UTR	14427809	14427858	.	+	.	Parent=Os03t0367800-01
Chr03	irgsp1_rep	mRNA	14431631	14435168	.	+	.	ID=Os03t0367900-01;Name=Os03t0367900-01;Locus_id=Os03g0367900;Note=Peptidase C15%2C pyroglutamyl peptidase I family protein.;Transcript_evidence=AK099464 (DDBJ%2C Best hit);ORF_evidence=NP_001149461.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508);InterPro=Peptidase C15%2C pyroglutamyl peptidase I (IPR000816),Peptidase C15%2C pyroglutamyl peptidase I-like (IPR016125);NIAS_FLcDNA=J013023I17;Expression=AK099464;TENOR=Os03t0367900-01;KEGG=Os03t0367900-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	14431631	14431793	.	+	.	Parent=Os03t0367900-01
Chr03	irgsp1_rep	five_prime_UTR	14433075	14433125	.	+	.	Parent=Os03t0367900-01
Chr03	irgsp1_rep	CDS	14433126	14433392	.	+	0	Parent=Os03t0367900-01
Chr03	irgsp1_rep	CDS	14433700	14433804	.	+	0	Parent=Os03t0367900-01
Chr03	irgsp1_rep	CDS	14433903	14433950	.	+	0	Parent=Os03t0367900-01
Chr03	irgsp1_rep	CDS	14434691	14434939	.	+	0	Parent=Os03t0367900-01
Chr03	irgsp1_rep	three_prime_UTR	14434940	14435168	.	+	.	Parent=Os03t0367900-01
Chr03	irgsp1_rep	mRNA	14431771	14435156	.	+	.	ID=Os03t0367900-02;Name=Os03t0367900-02;Locus_id=Os03g0367900;Note=Peptidase C15%2C pyroglutamyl peptidase I family protein.;Transcript_evidence=AK062116 (DDBJ%2C Best hit);ORF_evidence=NP_001149461.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508);InterPro=Peptidase C15%2C pyroglutamyl peptidase I (IPR000816),Peptidase C15%2C pyroglutamyl peptidase I-like (IPR016125);NIAS_FLcDNA=001-045-C05;Expression=AK062116;TENOR=Os03t0367900-02;KEGG=Os03t0367900-02;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	14431771	14431997	.	+	.	Parent=Os03t0367900-02
Chr03	irgsp1_rep	five_prime_UTR	14433075	14433125	.	+	.	Parent=Os03t0367900-02
Chr03	irgsp1_rep	CDS	14433126	14433392	.	+	0	Parent=Os03t0367900-02
Chr03	irgsp1_rep	CDS	14433700	14433804	.	+	0	Parent=Os03t0367900-02
Chr03	irgsp1_rep	CDS	14433903	14433950	.	+	0	Parent=Os03t0367900-02
Chr03	irgsp1_rep	CDS	14434691	14434939	.	+	0	Parent=Os03t0367900-02
Chr03	irgsp1_rep	three_prime_UTR	14434940	14435156	.	+	.	Parent=Os03t0367900-02
Chr03	irgsp1_rep	mRNA	14436127	14437395	.	-	.	ID=Os03t0368000-00;Name=Os03t0368000-00;Locus_id=Os03g0368000;Oryzabase Gene Symbol Synonym(s)=prx42;Oryzabase Gene Name Synonym(s)=class III peroxidase 42;Note=Similar to Peroxidase 1.;Transcript_evidence=CT834393 (DDBJ%2C Best hit);ORF_evidence=Q5U1Q1 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);Oryzabase=14568;TENOR=Os03t0368000-00;KEGG=Os03t0368000-00
Chr03	irgsp1_rep	five_prime_UTR	14437394	14437395	.	-	.	Parent=Os03t0368000-00
Chr03	irgsp1_rep	CDS	14437184	14437393	.	-	0	Parent=Os03t0368000-00
Chr03	irgsp1_rep	CDS	14436312	14437073	.	-	0	Parent=Os03t0368000-00
Chr03	irgsp1_rep	three_prime_UTR	14436127	14436311	.	-	.	Parent=Os03t0368000-00
Chr03	irgsp1_rep	mRNA	14436882	14437363	.	+	.	ID=Os03t0368150-00;Name=Os03t0368150-00;Locus_id=Os03g0368150;Note=Hypothetical protein.;Transcript_evidence=BT085962 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0368150-00
Chr03	irgsp1_rep	five_prime_UTR	14436882	14437141	.	+	.	Parent=Os03t0368150-00
Chr03	irgsp1_rep	CDS	14437142	14437363	.	+	0	Parent=Os03t0368150-00
Chr03	irgsp1_rep	mRNA	14445504	14446878	.	+	.	ID=Os03t0368300-01;Name=Os03t0368300-01;Locus_id=Os03g0368300;Oryzabase Gene Symbol Synonym(s)=prx43%2C OsPRX43;Oryzabase Gene Name Synonym(s)=class III peroxidase 43;Note=Similar to Peroxidase 1.;Transcript_evidence=AK073767 (DDBJ%2C Best hit);ORF_evidence=Q5U1Q1 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J033068K22;Oryzabase=14569;Expression=AK073767;TENOR=Os03t0368300-01;KEGG=Os03t0368300-01
Chr03	irgsp1_rep	five_prime_UTR	14445504	14445564	.	+	.	Parent=Os03t0368300-01
Chr03	irgsp1_rep	CDS	14445565	14445774	.	+	0	Parent=Os03t0368300-01
Chr03	irgsp1_rep	CDS	14445885	14446646	.	+	0	Parent=Os03t0368300-01
Chr03	irgsp1_rep	three_prime_UTR	14446647	14446878	.	+	.	Parent=Os03t0368300-01
Chr03	irgsp1_rep	mRNA	14445595	14446076	.	-	.	ID=Os03t0368351-00;Name=Os03t0368351-00;Locus_id=Os03g0368351;Note=Hypothetical protein.;Transcript_evidence=BT085962 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0368351-00
Chr03	irgsp1_rep	five_prime_UTR	14445817	14446076	.	-	.	Parent=Os03t0368351-00
Chr03	irgsp1_rep	CDS	14445595	14445816	.	-	0	Parent=Os03t0368351-00
Chr03	irgsp1_rep	mRNA	14464004	14464677	.	-	.	ID=Os03t0368650-00;Name=Os03t0368650-00;Locus_id=Os03g0368650;Note=EF-hand-like domain domain containing protein.;Transcript_evidence=DQ246164 (DDBJ);ORF_evidence=B9F8L6 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand-like domain (IPR011992);TENOR=Os03t0368650-00
Chr03	irgsp1_rep	five_prime_UTR	14464579	14464677	.	-	.	Parent=Os03t0368650-00
Chr03	irgsp1_rep	five_prime_UTR	14464247	14464336	.	-	.	Parent=Os03t0368650-00
Chr03	irgsp1_rep	CDS	14464079	14464246	.	-	0	Parent=Os03t0368650-00
Chr03	irgsp1_rep	three_prime_UTR	14464004	14464078	.	-	.	Parent=Os03t0368650-00
Chr03	irgsp1_rep	mRNA	14469692	14471204	.	+	.	ID=Os03t0368900-01;Name=Os03t0368900-01;Locus_id=Os03g0368900;Oryzabase Gene Symbol Synonym(s)=prx45;Oryzabase Gene Name Synonym(s)=class III peroxidase 45;Note=Haem peroxidase family protein.;Transcript_evidence=AK120411 (DDBJ%2C Best hit),AK099751 (DDBJ%2C Best hit);ORF_evidence=B6TJQ7 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J013092B13,J013092B12;Oryzabase=14571;Expression=AK120411;TENOR=Os03t0368900-01;KEGG=Os03t0368900-01 (EC:1.11.1.7)
Chr03	irgsp1_rep	five_prime_UTR	14469692	14469815	.	+	.	Parent=Os03t0368900-01
Chr03	irgsp1_rep	CDS	14469816	14470040	.	+	0	Parent=Os03t0368900-01
Chr03	irgsp1_rep	CDS	14470133	14470906	.	+	0	Parent=Os03t0368900-01
Chr03	irgsp1_rep	three_prime_UTR	14470907	14471204	.	+	.	Parent=Os03t0368900-01
Chr03	irgsp1_rep	mRNA	14469915	14470650	.	-	.	ID=Os03t0368950-00;Name=Os03t0368950-00;Locus_id=Os03g0368950;Note=Hypothetical protein.;Transcript_evidence=BT084813 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0368950-00
Chr03	irgsp1_rep	five_prime_UTR	14470576	14470650	.	-	.	Parent=Os03t0368950-00
Chr03	irgsp1_rep	CDS	14470345	14470575	.	-	0	Parent=Os03t0368950-00
Chr03	irgsp1_rep	three_prime_UTR	14470160	14470344	.	-	.	Parent=Os03t0368950-00
Chr03	irgsp1_rep	three_prime_UTR	14469915	14470060	.	-	.	Parent=Os03t0368950-00
Chr03	irgsp1_rep	mRNA	14480546	14482432	.	+	.	ID=Os03t0369000-01;Name=Os03t0369000-01;Locus_id=Os03g0369000;Oryzabase Gene Symbol Synonym(s)=prx46%2C POD1%2C OSPOD1;Oryzabase Gene Name Synonym(s)=class III peroxidase 46;Note=Similar to Peroxidase 1.;Transcript_evidence=AK064619 (DDBJ%2C Best hit);ORF_evidence=Q5U1P6 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=002-113-D04;Oryzabase=14572;Expression=AK064619;TENOR=Os03t0369000-01;KEGG=Os03t0369000-01
Chr03	irgsp1_rep	five_prime_UTR	14480546	14480679	.	+	.	Parent=Os03t0369000-01
Chr03	irgsp1_rep	CDS	14480680	14480937	.	+	0	Parent=Os03t0369000-01
Chr03	irgsp1_rep	CDS	14481482	14482246	.	+	0	Parent=Os03t0369000-01
Chr03	irgsp1_rep	three_prime_UTR	14482247	14482432	.	+	.	Parent=Os03t0369000-01
Chr03	irgsp1_rep	mRNA	14491748	14492423	.	+	.	ID=Os03t0369100-01;Name=Os03t0369100-01;Locus_id=Os03g0369100;RAP-DB Gene Symbol Synonym(s)=OsLTPL36;Oryzabase Gene Symbol Synonym(s)=OsLTPL36%2C LTPL36;Note=Lipid transfer protein%2C Regulation of seed development and germination%2C Regulation of seed quality;Transcript_evidence=AK111061;ORF_evidence=Q10KV4;InterPro=Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily (IPR036312),Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain (IPR016140);NIAS_FLcDNA=002-175-D08;Manual Curation=May 29%2C 2020;Literature_PMID=26398804;Oryzabase=20385;Expression=AK111061;TENOR=Os03t0369100-01;KEGG=Os03t0369100-01
Chr03	irgsp1_rep	five_prime_UTR	14491748	14491815	.	+	.	Parent=Os03t0369100-01
Chr03	irgsp1_rep	CDS	14491816	14492128	.	+	0	Parent=Os03t0369100-01
Chr03	irgsp1_rep	CDS	14492231	14492262	.	+	2	Parent=Os03t0369100-01
Chr03	irgsp1_rep	three_prime_UTR	14492263	14492423	.	+	.	Parent=Os03t0369100-01
Chr03	irgsp1_rep	mRNA	14495096	14496107	.	-	.	ID=Os03t0369250-00;Name=Os03t0369250-00;Locus_id=Os03g0369250;Note=Hypothetical protein.;Transcript_evidence=BT084813 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0369250-00
Chr03	irgsp1_rep	five_prime_UTR	14495823	14496107	.	-	.	Parent=Os03t0369250-00
Chr03	irgsp1_rep	CDS	14495591	14495822	.	-	0	Parent=Os03t0369250-00
Chr03	irgsp1_rep	CDS	14495096	14495211	.	-	2	Parent=Os03t0369250-00
Chr03	irgsp1_rep	mRNA	14504838	14509625	.	+	.	ID=Os03t0369600-00;Name=Os03t0369600-00;Locus_id=Os03g0369600;Oryzabase Gene Symbol Synonym(s)=prx48;Oryzabase Gene Name Synonym(s)=class III peroxidase 48;Note=Similar to Class III peroxidase 48.;Transcript_evidence=BT041391 (DDBJ);ORF_evidence=Q5U1P5 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);Oryzabase=14574;TENOR=Os03t0369600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	14504838	14505095	.	+	0	Parent=Os03t0369600-00
Chr03	irgsp1_rep	CDS	14505212	14505718	.	+	0	Parent=Os03t0369600-00
Chr03	irgsp1_rep	CDS	14509107	14509625	.	+	0	Parent=Os03t0369600-00
Chr03	irgsp1_rep	mRNA	14512480	14514288	.	+	.	ID=Os03t0369700-01;Name=Os03t0369700-01;Locus_id=Os03g0369700;Note=Similar to Pentatricopeptide repeat protein PPR868-14.;Transcript_evidence=AK106336 (DDBJ%2C Best hit);ORF_evidence=B6SWS0 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-101-G01;TENOR=Os03t0369700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	14512480	14514030	.	+	0	Parent=Os03t0369700-01
Chr03	irgsp1_rep	three_prime_UTR	14514031	14514288	.	+	.	Parent=Os03t0369700-01
Chr03	irgsp1_rep	mRNA	14514243	14518369	.	-	.	ID=Os03t0369800-01;Name=Os03t0369800-01;Locus_id=Os03g0369800;CGSNL Gene Symbol=NPSN12;CGSNL Gene Name=NOVEL PLANT SNARE 12;Oryzabase Gene Symbol Synonym(s)=OsNPSN12%2C OryzaNPSN12;Oryzabase Gene Name Synonym(s)=SNARE 12;Note=Similar to Novel plant SNARE 13 (AtNPSN13).;Transcript_evidence=AK064875 (DDBJ%2C Best hit);ORF_evidence=Q5XQQ6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Target SNARE coiled-coil domain (IPR000727),Sec20 (IPR005606);NIAS_FLcDNA=J013000J14;Oryzabase=7303;Expression=AK064875;TENOR=Os03t0369800-01;KEGG=Os03t0369800-01
Chr03	irgsp1_rep	five_prime_UTR	14518182	14518369	.	-	.	Parent=Os03t0369800-01
Chr03	irgsp1_rep	CDS	14518105	14518181	.	-	0	Parent=Os03t0369800-01
Chr03	irgsp1_rep	CDS	14516956	14517048	.	-	1	Parent=Os03t0369800-01
Chr03	irgsp1_rep	CDS	14516557	14516650	.	-	1	Parent=Os03t0369800-01
Chr03	irgsp1_rep	CDS	14516439	14516476	.	-	0	Parent=Os03t0369800-01
Chr03	irgsp1_rep	CDS	14516120	14516223	.	-	1	Parent=Os03t0369800-01
Chr03	irgsp1_rep	CDS	14515467	14515546	.	-	2	Parent=Os03t0369800-01
Chr03	irgsp1_rep	CDS	14515338	14515394	.	-	0	Parent=Os03t0369800-01
Chr03	irgsp1_rep	CDS	14515125	14515217	.	-	0	Parent=Os03t0369800-01
Chr03	irgsp1_rep	CDS	14514967	14515041	.	-	0	Parent=Os03t0369800-01
Chr03	irgsp1_rep	CDS	14514474	14514590	.	-	0	Parent=Os03t0369800-01
Chr03	irgsp1_rep	three_prime_UTR	14514243	14514473	.	-	.	Parent=Os03t0369800-01
Chr03	irgsp1_rep	mRNA	14526314	14530466	.	+	.	ID=Os03t0370000-01;Name=Os03t0370000-01;Locus_id=Os03g0370000;Oryzabase Gene Symbol Synonym(s)=Ospdhk1;Oryzabase Gene Name Synonym(s)=pyruvate dehydrogenase kinase 1;Note=Similar to Pyruvate dehydrogenase kinase isoform 1 (EC 2.7.1.99).;Transcript_evidence=AK100033 (DDBJ%2C Best hit);ORF_evidence=NP_001104897.1 (RefSeq);GO=Biological Process: signal transduction (GO:0007165),Biological Process: phosphorylation (GO:0016310),Biological Process: peptidyl-histidine phosphorylation (GO:0018106),Molecular Function: two-component sensor activity (GO:0000155),Molecular Function: protein histidine kinase activity (GO:0004673),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=ATPase-like%2C ATP-binding domain (IPR003594),Signal transduction histidine kinase-related protein%2C C-terminal (IPR004358),Signal transduction histidine kinase%2C core (IPR005467),Branched-chain alpha-ketoacid dehydrogenase kinase/Pyruvate dehydrogenase kinase%2C N-terminal (IPR018955);NIAS_FLcDNA=J013149J07;Oryzabase=17978;Expression=AK100033;TENOR=Os03t0370000-01;KEGG=Os03t0370000-01 (EC:2.7.1.99%2C EC:2.7.11.2)
Chr03	irgsp1_rep	five_prime_UTR	14526314	14526486	.	+	.	Parent=Os03t0370000-01
Chr03	irgsp1_rep	CDS	14526487	14526729	.	+	0	Parent=Os03t0370000-01
Chr03	irgsp1_rep	CDS	14527699	14527960	.	+	0	Parent=Os03t0370000-01
Chr03	irgsp1_rep	CDS	14528473	14528653	.	+	2	Parent=Os03t0370000-01
Chr03	irgsp1_rep	CDS	14528981	14529128	.	+	1	Parent=Os03t0370000-01
Chr03	irgsp1_rep	CDS	14529676	14529880	.	+	0	Parent=Os03t0370000-01
Chr03	irgsp1_rep	CDS	14530144	14530202	.	+	2	Parent=Os03t0370000-01
Chr03	irgsp1_rep	three_prime_UTR	14530203	14530466	.	+	.	Parent=Os03t0370000-01
Chr03	irgsp1_rep	mRNA	14533825	14536883	.	+	.	ID=Os03t0370200-00;Name=Os03t0370200-00;Locus_id=Os03g0370200;Note=Similar to predicted protein.;Transcript_evidence=EU946734 (DDBJ);ORF_evidence=NP_191780.1 (RefSeq);GO=Cellular Component: peroxisome (GO:0005777);InterPro=Domain of unknown function DUF88 (IPR021139),Limkain-b1 (IPR024768);TENOR=Os03t0370200-00;KEGG=Os03t0370200-00
Chr03	irgsp1_rep	five_prime_UTR	14533825	14533872	.	+	.	Parent=Os03t0370200-00
Chr03	irgsp1_rep	CDS	14533873	14534119	.	+	0	Parent=Os03t0370200-00
Chr03	irgsp1_rep	CDS	14534242	14536883	.	+	2	Parent=Os03t0370200-00
Chr03	irgsp1_rep	mRNA	14538137	14539609	.	-	.	ID=Os03t0370250-01;Name=Os03t0370250-01;Locus_id=Os03g0370250;Note=Protein of unknown function DUF573 family protein.;Transcript_evidence=AK243208 (DDBJ%2C Best hit);ORF_evidence=NP_001173437.1 (RefSeq);InterPro=Protein of unknown function DUF573 (IPR007592);NIAS_FLcDNA=J100042A05;TENOR=Os03t0370250-01;KEGG=Os03t0370250-01
Chr03	irgsp1_rep	CDS	14538368	14539609	.	-	0	Parent=Os03t0370250-01
Chr03	irgsp1_rep	three_prime_UTR	14538137	14538367	.	-	.	Parent=Os03t0370250-01
Chr03	irgsp1_rep	mRNA	14543805	14544754	.	+	.	ID=Os03t0370400-01;Name=Os03t0370400-01;Locus_id=Os03g0370400;Note=Protein of unknown function DUF679 family protein.;Transcript_evidence=AK060059 (DDBJ%2C Best hit);ORF_evidence=Q9FRC7 (UniProt);InterPro=Protein of unknown function DUF679 (IPR007770);NIAS_FLcDNA=006-305-F04;Expression=AK060059;TENOR=Os03t0370400-01;KEGG=Os03t0370400-01
Chr03	irgsp1_rep	five_prime_UTR	14543805	14543893	.	+	.	Parent=Os03t0370400-01
Chr03	irgsp1_rep	CDS	14543894	14544475	.	+	0	Parent=Os03t0370400-01
Chr03	irgsp1_rep	three_prime_UTR	14544476	14544754	.	+	.	Parent=Os03t0370400-01
Chr03	irgsp1_rep	mRNA	14545715	14547899	.	+	.	ID=Os03t0370500-02;Name=Os03t0370500-02;Locus_id=Os03g0370500;Note=Similar to H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-) (Nucleolar protein NAP57 homolog) (Nopp-140 associated protein of 57 kDa homolog) (AtNAP57).;Transcript_evidence=AK063289 (DDBJ%2C Best hit),AK103723 (DDBJ%2C Best hit);ORF_evidence=NP_191274.1 (RefSeq);GO=Biological Process: pseudouridine synthesis (GO:0001522),Biological Process: RNA processing (GO:0006396),Biological Process: RNA modification (GO:0009451),Molecular Function: RNA binding (GO:0003723),Molecular Function: pseudouridine synthase activity (GO:0009982);InterPro=Pseudouridine synthase/archaeosine transglycosylase (IPR002478),Pseudouridine synthase II (IPR002501),Uncharacterised domain CHP00451 (IPR004521),Pseudouridine synthase-related (IPR004802),Dyskerin-like (IPR012960),PUA-like domain (IPR015947),Pseudouridine synthase%2C catalytic domain (IPR020103);NIAS_FLcDNA=001-113-E01,J033138C07;Expression=AK063289;TENOR=Os03t0370500-02;KEGG=Os03t0370500-02 (EC:5.4.99.-)
Chr03	irgsp1_rep	five_prime_UTR	14545715	14545792	.	+	.	Parent=Os03t0370500-02
Chr03	irgsp1_rep	CDS	14545793	14547568	.	+	0	Parent=Os03t0370500-02
Chr03	irgsp1_rep	three_prime_UTR	14547569	14547899	.	+	.	Parent=Os03t0370500-02
Chr03	irgsp1_rep	mRNA	14548912	14549608	.	-	.	ID=Os03t0370600-00;Name=Os03t0370600-00;Locus_id=Os03g0370600;Oryzabase Gene Symbol Synonym(s)=OsRCI2-3;Oryzabase Gene Name Synonym(s)=rare cold-inducible 2-3;Note=Similar to Hydrophobic protein LTI6A (Low temperature-induced protein 6A).;Transcript_evidence=CT835149 (DDBJ%2C Best hit);ORF_evidence=B6T1K8 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Proteolipid membrane potential modulator (IPR000612);Oryzabase=18169;TENOR=Os03t0370600-00;KEGG=Os03t0370600-00
Chr03	irgsp1_rep	five_prime_UTR	14549524	14549608	.	-	.	Parent=Os03t0370600-00
Chr03	irgsp1_rep	CDS	14549416	14549523	.	-	0	Parent=Os03t0370600-00
Chr03	irgsp1_rep	CDS	14549198	14549284	.	-	0	Parent=Os03t0370600-00
Chr03	irgsp1_rep	three_prime_UTR	14548912	14549197	.	-	.	Parent=Os03t0370600-00
Chr03	irgsp1_rep	mRNA	14552198	14552749	.	+	.	ID=Os03t0370800-00;Name=Os03t0370800-00;Locus_id=Os03g0370800;CGSNL Gene Symbol=COPT3;CGSNL Gene Name=COPPER TRANSPORTER 3;Oryzabase Gene Symbol Synonym(s)=COPT3%2C OsCOPT3;Oryzabase Gene Name Synonym(s)=copper transporter 3;Note=Ctr copper transporter family protein.;Transcript_evidence=EU952941 (DDBJ);ORF_evidence=Q10KT6 (UniProt);GO=Biological Process: copper ion transmembrane transport (GO:0035434),Cellular Component: integral to membrane (GO:0016021),Molecular Function: copper ion transmembrane transporter activity (GO:0005375);InterPro=Ctr copper transporter (IPR007274);Oryzabase=12125;TENOR=Os03t0370800-00;KEGG=Os03t0370800-00
Chr03	irgsp1_rep	CDS	14552198	14552749	.	+	0	Parent=Os03t0370800-00
Chr03	irgsp1_rep	mRNA	14553015	14556433	.	+	.	ID=Os03t0370900-01;Name=Os03t0370900-01;Locus_id=Os03g0370900;Note=Similar to CytoChrome P450.;Transcript_evidence=AK101513 (DDBJ%2C Best hit);ORF_evidence=Q10KT4 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J033046E16;Expression=AK101513;TENOR=Os03t0370900-01;KEGG=Os03t0370900-01
Chr03	irgsp1_rep	five_prime_UTR	14553015	14553101	.	+	.	Parent=Os03t0370900-01
Chr03	irgsp1_rep	CDS	14553102	14553372	.	+	0	Parent=Os03t0370900-01
Chr03	irgsp1_rep	CDS	14554536	14554759	.	+	2	Parent=Os03t0370900-01
Chr03	irgsp1_rep	CDS	14554897	14555147	.	+	0	Parent=Os03t0370900-01
Chr03	irgsp1_rep	CDS	14555233	14555611	.	+	1	Parent=Os03t0370900-01
Chr03	irgsp1_rep	CDS	14555798	14556229	.	+	0	Parent=Os03t0370900-01
Chr03	irgsp1_rep	three_prime_UTR	14556230	14556433	.	+	.	Parent=Os03t0370900-01
Chr03	irgsp1_rep	mRNA	14553070	14556804	.	+	.	ID=Os03t0370900-02;Name=Os03t0370900-02;Locus_id=Os03g0370900;Note=Similar to CytoChrome P450.;Transcript_evidence=AK120700 (DDBJ%2C Best hit);ORF_evidence=Q10KT4 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J013170M24;Expression=AK120700;TENOR=Os03t0370900-02;KEGG=Os03t0370900-02
Chr03	irgsp1_rep	five_prime_UTR	14553070	14553101	.	+	.	Parent=Os03t0370900-02
Chr03	irgsp1_rep	CDS	14553102	14553372	.	+	0	Parent=Os03t0370900-02
Chr03	irgsp1_rep	CDS	14554536	14554759	.	+	2	Parent=Os03t0370900-02
Chr03	irgsp1_rep	CDS	14554897	14555147	.	+	0	Parent=Os03t0370900-02
Chr03	irgsp1_rep	CDS	14555233	14555611	.	+	1	Parent=Os03t0370900-02
Chr03	irgsp1_rep	CDS	14555798	14556229	.	+	0	Parent=Os03t0370900-02
Chr03	irgsp1_rep	three_prime_UTR	14556230	14556804	.	+	.	Parent=Os03t0370900-02
Chr03	irgsp1_rep	mRNA	14559322	14561845	.	+	.	ID=Os03t0371000-01;Name=Os03t0371000-01;Locus_id=Os03g0371000;Oryzabase Gene Symbol Synonym(s)=OsSTA101;Note=Similar to CytoChrome P450 family protein%2C expressed.;Transcript_evidence=AK069394 (DDBJ%2C Best hit);ORF_evidence=Q10KT4 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: monooxygenase activity (GO:0004497),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group II (IPR002402);NIAS_FLcDNA=J023014D12;Oryzabase=19394;TENOR=Os03t0371000-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	14559322	14559600	.	+	.	Parent=Os03t0371000-01
Chr03	irgsp1_rep	CDS	14559601	14559625	.	+	0	Parent=Os03t0371000-01
Chr03	irgsp1_rep	CDS	14559814	14560037	.	+	2	Parent=Os03t0371000-01
Chr03	irgsp1_rep	CDS	14560358	14560608	.	+	0	Parent=Os03t0371000-01
Chr03	irgsp1_rep	CDS	14560723	14560762	.	+	1	Parent=Os03t0371000-01
Chr03	irgsp1_rep	three_prime_UTR	14560763	14561104	.	+	.	Parent=Os03t0371000-01
Chr03	irgsp1_rep	three_prime_UTR	14561256	14561845	.	+	.	Parent=Os03t0371000-01
Chr03	irgsp1_rep	mRNA	14567492	14571380	.	+	.	ID=Os03t0371300-00;Name=Os03t0371300-00;Locus_id=Os03g0371300;CGSNL Gene Symbol=CYP72A1;CGSNL Gene Name=P-450 72A1;Oryzabase Gene Symbol Synonym(s)=CYP72A1;Oryzabase Gene Name Synonym(s)=CytoChrome P450 72A1;Note=Similar to CytoChrome P450 CYP709E4.;Transcript_evidence=ab initio prediction;ORF_evidence=B6TF97 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);Oryzabase=15059;TENOR=Os03t0371300-00;KEGG=Os03t0371300-00
Chr03	irgsp1_rep	CDS	14567492	14567777	.	+	0	Parent=Os03t0371300-00
Chr03	irgsp1_rep	CDS	14570797	14571020	.	+	2	Parent=Os03t0371300-00
Chr03	irgsp1_rep	CDS	14571264	14571380	.	+	0	Parent=Os03t0371300-00
Chr03	irgsp1_rep	mRNA	14571477	14572023	.	+	.	ID=Os03t0371350-00;Name=Os03t0371350-00;Locus_id=Os03g0371350;Note=Similar to CytoChrome P450 family protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10KT4 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);TENOR=Os03t0371350-00;KEGG=Os03t0371350-00
Chr03	irgsp1_rep	CDS	14571477	14571514	.	+	0	Parent=Os03t0371350-00
Chr03	irgsp1_rep	CDS	14571615	14572023	.	+	1	Parent=Os03t0371350-00
Chr03	irgsp1_rep	mRNA	14572500	14573221	.	+	.	ID=Os03t0371400-01;Name=Os03t0371400-01;Locus_id=Os03g0371400;Note=CytoChrome P450 family protein.;Transcript_evidence=AK107816 (DDBJ%2C Best hit);ORF_evidence=Q10KT4 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=002-133-F08;Expression=AK107816;TENOR=Os03t0371400-01;KEGG=Os03t0371400-01
Chr03	irgsp1_rep	CDS	14572500	14572583	.	+	0	Parent=Os03t0371400-01
Chr03	irgsp1_rep	CDS	14572729	14572941	.	+	0	Parent=Os03t0371400-01
Chr03	irgsp1_rep	three_prime_UTR	14572942	14573221	.	+	.	Parent=Os03t0371400-01
Chr03	irgsp1_rep	mRNA	14578539	14579140	.	+	.	ID=Os03t0371600-00;Name=Os03t0371600-00;Locus_id=Os03g0371600;Note=Conserved hypothetical protein.;Transcript_evidence=CT835118 (DDBJ%2C Best hit);ORF_evidence=NP_001173440.1 (RefSeq);TENOR=Os03t0371600-00;KEGG=Os03t0371600-00
Chr03	irgsp1_rep	five_prime_UTR	14578539	14578647	.	+	.	Parent=Os03t0371600-00
Chr03	irgsp1_rep	CDS	14578648	14578941	.	+	0	Parent=Os03t0371600-00
Chr03	irgsp1_rep	three_prime_UTR	14578942	14579140	.	+	.	Parent=Os03t0371600-00
Chr03	irgsp1_rep	mRNA	14598168	14599574	.	-	.	ID=Os03t0371800-00;Name=Os03t0371800-00;Locus_id=Os03g0371800;Oryzabase Gene Symbol Synonym(s)=Os-MYB2%2C OsMYB2%2C MYB2;Note=Similar to Myb-like DNA-binding domain containing protein.;Transcript_evidence=BT069411 (DDBJ);ORF_evidence=Q10KS8 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);Oryzabase=21763;TENOR=Os03t0371800-00;KEGG=Os03t0371800-00
Chr03	irgsp1_rep	five_prime_UTR	14599573	14599574	.	-	.	Parent=Os03t0371800-00
Chr03	irgsp1_rep	CDS	14599440	14599572	.	-	0	Parent=Os03t0371800-00
Chr03	irgsp1_rep	CDS	14598168	14599231	.	-	2	Parent=Os03t0371800-00
Chr03	irgsp1_rep	mRNA	14656235	14657829	.	+	.	ID=Os03t0372500-01;Name=Os03t0372500-01;Locus_id=Os03g0372500;Oryzabase Gene Symbol Synonym(s)=OsPP52;Oryzabase Gene Name Synonym(s)=Protein phosphatase 52;Note=Hypothetical gene.;Transcript_evidence=AK068964 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013170M15;Oryzabase=18638;Expression=AK068964;TENOR=Os03t0372500-01;KEGG=Os03t0372500-01
Chr03	irgsp1_rep	five_prime_UTR	14656235	14656235	.	+	.	Parent=Os03t0372500-01
Chr03	irgsp1_rep	CDS	14656236	14656436	.	+	0	Parent=Os03t0372500-01
Chr03	irgsp1_rep	CDS	14657025	14657081	.	+	0	Parent=Os03t0372500-01
Chr03	irgsp1_rep	three_prime_UTR	14657082	14657829	.	+	.	Parent=Os03t0372500-01
Chr03	irgsp1_rep	mRNA	14656240	14664388	.	+	.	ID=Os03t0372500-02;Name=Os03t0372500-02;Locus_id=Os03g0372500;Oryzabase Gene Symbol Synonym(s)=OsPP52;Oryzabase Gene Name Synonym(s)=Protein phosphatase 52;Note=Similar to TA11 protein (Fragment).;Transcript_evidence=AK102996 (DDBJ%2C Best hit);ORF_evidence=NP_850464.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J033116E19;Oryzabase=18638;Expression=AK102996;TENOR=Os03t0372500-02;KEGG=Os03t0372500-02
Chr03	irgsp1_rep	five_prime_UTR	14656240	14656436	.	+	.	Parent=Os03t0372500-02
Chr03	irgsp1_rep	five_prime_UTR	14657973	14658038	.	+	.	Parent=Os03t0372500-02
Chr03	irgsp1_rep	CDS	14658039	14660477	.	+	0	Parent=Os03t0372500-02
Chr03	irgsp1_rep	CDS	14662488	14662601	.	+	0	Parent=Os03t0372500-02
Chr03	irgsp1_rep	CDS	14663064	14663328	.	+	0	Parent=Os03t0372500-02
Chr03	irgsp1_rep	CDS	14664005	14664120	.	+	2	Parent=Os03t0372500-02
Chr03	irgsp1_rep	three_prime_UTR	14664121	14664388	.	+	.	Parent=Os03t0372500-02
Chr03	irgsp1_rep	mRNA	14656279	14664804	.	+	.	ID=Os03t0372500-03;Name=Os03t0372500-03;Locus_id=Os03g0372500;Oryzabase Gene Symbol Synonym(s)=OsPP52;Oryzabase Gene Name Synonym(s)=Protein phosphatase 52;Note=Similar to TA11 protein (Fragment).;Transcript_evidence=AK122180 (DDBJ%2C Best hit);ORF_evidence=NP_850464.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J033149E04;Oryzabase=18638;Expression=AK122180;TENOR=Os03t0372500-03;KEGG=Os03t0372500-03
Chr03	irgsp1_rep	five_prime_UTR	14656279	14656436	.	+	.	Parent=Os03t0372500-03
Chr03	irgsp1_rep	five_prime_UTR	14657973	14658038	.	+	.	Parent=Os03t0372500-03
Chr03	irgsp1_rep	CDS	14658039	14660477	.	+	0	Parent=Os03t0372500-03
Chr03	irgsp1_rep	CDS	14662488	14662601	.	+	0	Parent=Os03t0372500-03
Chr03	irgsp1_rep	CDS	14663064	14663328	.	+	0	Parent=Os03t0372500-03
Chr03	irgsp1_rep	CDS	14664005	14664120	.	+	2	Parent=Os03t0372500-03
Chr03	irgsp1_rep	three_prime_UTR	14664121	14664138	.	+	.	Parent=Os03t0372500-03
Chr03	irgsp1_rep	three_prime_UTR	14664456	14664804	.	+	.	Parent=Os03t0372500-03
Chr03	irgsp1_rep	mRNA	14667776	14668383	.	-	.	ID=Os03t0372600-00;Name=Os03t0372600-00;Locus_id=Os03g0372600;Note=Heavy metal-associated domain%2C HMA domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q84TS2 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);TENOR=Os03t0372600-00
Chr03	irgsp1_rep	CDS	14668372	14668383	.	-	0	Parent=Os03t0372600-00
Chr03	irgsp1_rep	CDS	14668198	14668273	.	-	0	Parent=Os03t0372600-00
Chr03	irgsp1_rep	CDS	14667776	14668104	.	-	2	Parent=Os03t0372600-00
Chr03	irgsp1_rep	mRNA	14671034	14673351	.	-	.	ID=Os03t0372650-00;Name=Os03t0372650-00;Locus_id=Os03g0372650;Note=Hypothetical gene.;Transcript_evidence=BT024004 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0372650-00;KEGG=Os03t0372650-00
Chr03	irgsp1_rep	five_prime_UTR	14672963	14673351	.	-	.	Parent=Os03t0372650-00
Chr03	irgsp1_rep	CDS	14672846	14672962	.	-	0	Parent=Os03t0372650-00
Chr03	irgsp1_rep	CDS	14671478	14671669	.	-	0	Parent=Os03t0372650-00
Chr03	irgsp1_rep	CDS	14671334	14671345	.	-	0	Parent=Os03t0372650-00
Chr03	irgsp1_rep	three_prime_UTR	14671034	14671333	.	-	.	Parent=Os03t0372650-00
Chr03	irgsp1_rep	mRNA	14670776	14673440	.	+	.	ID=Os03t0372700-01;Name=Os03t0372700-01;Locus_id=Os03g0372700;Note=Similar to low temperature viability protein.;Transcript_evidence=AK064323 (DDBJ%2C Best hit);ORF_evidence=B6TGN3 (UniProt);NIAS_FLcDNA=002-107-F03;TENOR=Os03t0372700-01
Chr03	irgsp1_rep	five_prime_UTR	14670776	14670905	.	+	.	Parent=Os03t0372700-01
Chr03	irgsp1_rep	CDS	14670906	14671289	.	+	0	Parent=Os03t0372700-01
Chr03	irgsp1_rep	CDS	14671386	14671763	.	+	0	Parent=Os03t0372700-01
Chr03	irgsp1_rep	CDS	14672852	14673440	.	+	0	Parent=Os03t0372700-01
Chr03	irgsp1_rep	mRNA	14670795	14674931	.	+	.	ID=Os03t0372700-02;Name=Os03t0372700-02;Locus_id=Os03g0372700;Note=Low temperature viability protein family protein.;Transcript_evidence=AK073312 (DDBJ%2C Best hit);ORF_evidence=B6TGN3 (UniProt);NIAS_FLcDNA=J033025K03;Expression=AK073312;TENOR=Os03t0372700-02;KEGG=Os03t0372700-02
Chr03	irgsp1_rep	five_prime_UTR	14670795	14670905	.	+	.	Parent=Os03t0372700-02
Chr03	irgsp1_rep	CDS	14670906	14671289	.	+	0	Parent=Os03t0372700-02
Chr03	irgsp1_rep	CDS	14671386	14671763	.	+	0	Parent=Os03t0372700-02
Chr03	irgsp1_rep	CDS	14672852	14673460	.	+	0	Parent=Os03t0372700-02
Chr03	irgsp1_rep	CDS	14673951	14674078	.	+	0	Parent=Os03t0372700-02
Chr03	irgsp1_rep	CDS	14674670	14674673	.	+	1	Parent=Os03t0372700-02
Chr03	irgsp1_rep	three_prime_UTR	14674674	14674931	.	+	.	Parent=Os03t0372700-02
Chr03	irgsp1_rep	mRNA	14680396	14682657	.	+	.	ID=Os03t0372900-01;Name=Os03t0372900-01;Locus_id=Os03g0372900;Oryzabase Gene Symbol Synonym(s)=OsFbox146%2C Os_F0179;Oryzabase Gene Name Synonym(s)=F-box protein 146;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK100417 (DDBJ%2C Best hit);ORF_evidence=Q84TS5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated domain%2C type 1 (IPR006527),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023087N09;Oryzabase=16936;Expression=AK100417;TENOR=Os03t0372900-01;KEGG=Os03t0372900-01
Chr03	irgsp1_rep	five_prime_UTR	14680396	14680531	.	+	.	Parent=Os03t0372900-01
Chr03	irgsp1_rep	five_prime_UTR	14681233	14681282	.	+	.	Parent=Os03t0372900-01
Chr03	irgsp1_rep	CDS	14681283	14682563	.	+	0	Parent=Os03t0372900-01
Chr03	irgsp1_rep	three_prime_UTR	14682564	14682657	.	+	.	Parent=Os03t0372900-01
Chr03	irgsp1_rep	mRNA	14683357	14683904	.	-	.	ID=Os03t0372950-01;Name=Os03t0372950-01;Locus_id=Os03g0372950;Note=Hypothetical gene.;Transcript_evidence=AK242140 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J075150I04;TENOR=Os03t0372950-01;KEGG=Os03t0372950-01
Chr03	irgsp1_rep	five_prime_UTR	14683903	14683904	.	-	.	Parent=Os03t0372950-01
Chr03	irgsp1_rep	CDS	14683612	14683902	.	-	0	Parent=Os03t0372950-01
Chr03	irgsp1_rep	three_prime_UTR	14683357	14683611	.	-	.	Parent=Os03t0372950-01
Chr03	irgsp1_rep	mRNA	14690359	14691910	.	-	.	ID=Os03t0373100-01;Name=Os03t0373100-01;Locus_id=Os03g0373100;Note=Conserved hypothetical protein.;Transcript_evidence=AK107517 (DDBJ%2C Best hit);ORF_evidence=Q84TT1 (UniProt);NIAS_FLcDNA=002-129-F05;TENOR=Os03t0373100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	14691834	14691910	.	-	.	Parent=Os03t0373100-01
Chr03	irgsp1_rep	CDS	14690553	14691833	.	-	0	Parent=Os03t0373100-01
Chr03	irgsp1_rep	three_prime_UTR	14690359	14690552	.	-	.	Parent=Os03t0373100-01
Chr03	irgsp1_rep	mRNA	14698096	14698884	.	-	.	ID=Os03t0373300-01;Name=Os03t0373300-01;Locus_id=Os03g0373300;Note=Protein of unknown function DUF1110 domain containing protein.;Transcript_evidence=AK107897 (DDBJ%2C Best hit);ORF_evidence=Q84TT5 (UniProt);InterPro=Protein of unknown function DUF1110 (IPR010535);NIAS_FLcDNA=002-134-F04;TENOR=Os03t0373300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	14698814	14698884	.	-	.	Parent=Os03t0373300-01
Chr03	irgsp1_rep	CDS	14698454	14698813	.	-	0	Parent=Os03t0373300-01
Chr03	irgsp1_rep	three_prime_UTR	14698096	14698453	.	-	.	Parent=Os03t0373300-01
Chr03	irgsp1_rep	mRNA	14701314	14705044	.	+	.	ID=Os03t0373500-01;Name=Os03t0373500-01;Locus_id=Os03g0373500;Note=Hypothetical protein.;Transcript_evidence=AK111250 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-180-D11;TENOR=Os03t0373500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	14701314	14701314	.	+	.	Parent=Os03t0373500-01
Chr03	irgsp1_rep	CDS	14701315	14701610	.	+	0	Parent=Os03t0373500-01
Chr03	irgsp1_rep	CDS	14702886	14702907	.	+	1	Parent=Os03t0373500-01
Chr03	irgsp1_rep	three_prime_UTR	14702908	14702979	.	+	.	Parent=Os03t0373500-01
Chr03	irgsp1_rep	three_prime_UTR	14704407	14705044	.	+	.	Parent=Os03t0373500-01
Chr03	irgsp1_rep	mRNA	14706965	14707330	.	-	.	ID=Os03t0373601-00;Name=Os03t0373601-00;Locus_id=Os03g0373601;Note=Non-protein coding transcript.;Transcript_evidence=CT835130 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os03t0373601-00
Chr03	irgsp1_rep	exon	14706965	14707330	.	-	.	Parent=Os03t0373601-00
Chr03	irgsp1_rep	mRNA	14721288	14725228	.	-	.	ID=Os03t0374100-01;Name=Os03t0374100-01;Locus_id=Os03g0374100;Note=Hepatocellular carcinoma-associated antigen 59 family protein.;Transcript_evidence=AK066002 (DDBJ%2C Best hit);ORF_evidence=B4FSC7 (UniProt);InterPro=Hepatocellular carcinoma-associated antigen 59 (IPR010756);NIAS_FLcDNA=J013050B10;TENOR=Os03t0374100-01
Chr03	irgsp1_rep	five_prime_UTR	14725075	14725228	.	-	.	Parent=Os03t0374100-01
Chr03	irgsp1_rep	CDS	14724998	14725074	.	-	0	Parent=Os03t0374100-01
Chr03	irgsp1_rep	CDS	14724659	14724895	.	-	1	Parent=Os03t0374100-01
Chr03	irgsp1_rep	CDS	14724430	14724544	.	-	1	Parent=Os03t0374100-01
Chr03	irgsp1_rep	CDS	14724254	14724327	.	-	0	Parent=Os03t0374100-01
Chr03	irgsp1_rep	CDS	14723158	14723315	.	-	1	Parent=Os03t0374100-01
Chr03	irgsp1_rep	CDS	14721805	14721977	.	-	2	Parent=Os03t0374100-01
Chr03	irgsp1_rep	three_prime_UTR	14721288	14721804	.	-	.	Parent=Os03t0374100-01
Chr03	irgsp1_rep	mRNA	14721293	14725194	.	-	.	ID=Os03t0374100-02;Name=Os03t0374100-02;Locus_id=Os03g0374100;Note=Hepatocellular carcinoma-associated antigen 59 family protein.;Transcript_evidence=AK104845 (DDBJ%2C Best hit);ORF_evidence=B4FSC7 (UniProt);InterPro=Hepatocellular carcinoma-associated antigen 59 (IPR010756);NIAS_FLcDNA=001-042-H03;TENOR=Os03t0374100-02
Chr03	irgsp1_rep	five_prime_UTR	14725075	14725194	.	-	.	Parent=Os03t0374100-02
Chr03	irgsp1_rep	CDS	14724998	14725074	.	-	0	Parent=Os03t0374100-02
Chr03	irgsp1_rep	CDS	14724659	14724895	.	-	1	Parent=Os03t0374100-02
Chr03	irgsp1_rep	CDS	14724430	14724544	.	-	1	Parent=Os03t0374100-02
Chr03	irgsp1_rep	CDS	14724254	14724327	.	-	0	Parent=Os03t0374100-02
Chr03	irgsp1_rep	CDS	14723158	14723315	.	-	1	Parent=Os03t0374100-02
Chr03	irgsp1_rep	CDS	14721805	14721977	.	-	2	Parent=Os03t0374100-02
Chr03	irgsp1_rep	three_prime_UTR	14721293	14721804	.	-	.	Parent=Os03t0374100-02
Chr03	irgsp1_rep	mRNA	14721287	14725147	.	-	.	ID=Os03t0374100-03;Name=Os03t0374100-03;Locus_id=Os03g0374100;Note=Hepatocellular carcinoma-associated antigen 59 family protein.;Transcript_evidence=AK099328 (DDBJ%2C Best hit);ORF_evidence=B4FSC7 (UniProt);InterPro=Hepatocellular carcinoma-associated antigen 59 (IPR010756);NIAS_FLcDNA=J033011M11;TENOR=Os03t0374100-03
Chr03	irgsp1_rep	five_prime_UTR	14725075	14725147	.	-	.	Parent=Os03t0374100-03
Chr03	irgsp1_rep	CDS	14724998	14725074	.	-	0	Parent=Os03t0374100-03
Chr03	irgsp1_rep	CDS	14724659	14724895	.	-	1	Parent=Os03t0374100-03
Chr03	irgsp1_rep	CDS	14724430	14724544	.	-	1	Parent=Os03t0374100-03
Chr03	irgsp1_rep	CDS	14724254	14724327	.	-	0	Parent=Os03t0374100-03
Chr03	irgsp1_rep	CDS	14723158	14723315	.	-	1	Parent=Os03t0374100-03
Chr03	irgsp1_rep	CDS	14721805	14721977	.	-	2	Parent=Os03t0374100-03
Chr03	irgsp1_rep	three_prime_UTR	14721287	14721804	.	-	.	Parent=Os03t0374100-03
Chr03	irgsp1_rep	mRNA	14728772	14738309	.	+	.	ID=Os03t0374400-01;Name=Os03t0374400-01;Locus_id=Os03g0374400;Note=SNARE associated Golgi protein domain containing protein.;Transcript_evidence=AK069719 (DDBJ%2C Best hit);ORF_evidence=Q2HSS2 (UniProt);InterPro=SNARE associated Golgi protein (IPR015414);NIAS_FLcDNA=J023026H16;Expression=AK069719;TENOR=Os03t0374400-01;KEGG=Os03t0374400-01
Chr03	irgsp1_rep	five_prime_UTR	14728772	14728920	.	+	.	Parent=Os03t0374400-01
Chr03	irgsp1_rep	CDS	14728921	14728973	.	+	0	Parent=Os03t0374400-01
Chr03	irgsp1_rep	CDS	14735723	14735993	.	+	1	Parent=Os03t0374400-01
Chr03	irgsp1_rep	CDS	14736402	14736638	.	+	0	Parent=Os03t0374400-01
Chr03	irgsp1_rep	CDS	14736754	14736971	.	+	0	Parent=Os03t0374400-01
Chr03	irgsp1_rep	CDS	14737427	14737688	.	+	1	Parent=Os03t0374400-01
Chr03	irgsp1_rep	three_prime_UTR	14737689	14738309	.	+	.	Parent=Os03t0374400-01
Chr03	irgsp1_rep	mRNA	14739099	14741603	.	-	.	ID=Os03t0374500-00;Name=Os03t0374500-00;Locus_id=Os03g0374500;Note=Similar to calmodulin-binding family protein.;Transcript_evidence=AK362690 (DDBJ);ORF_evidence=NP_191407.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);TENOR=Os03t0374500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	14741082	14741603	.	-	0	Parent=Os03t0374500-00
Chr03	irgsp1_rep	CDS	14740902	14740967	.	-	0	Parent=Os03t0374500-00
Chr03	irgsp1_rep	CDS	14740714	14740802	.	-	0	Parent=Os03t0374500-00
Chr03	irgsp1_rep	CDS	14740531	14740621	.	-	1	Parent=Os03t0374500-00
Chr03	irgsp1_rep	CDS	14740286	14740432	.	-	0	Parent=Os03t0374500-00
Chr03	irgsp1_rep	CDS	14740094	14740186	.	-	0	Parent=Os03t0374500-00
Chr03	irgsp1_rep	CDS	14739867	14739968	.	-	0	Parent=Os03t0374500-00
Chr03	irgsp1_rep	CDS	14739099	14739722	.	-	0	Parent=Os03t0374500-00
Chr03	irgsp1_rep	mRNA	14739114	14739979	.	+	.	ID=Os03t0374551-00;Name=Os03t0374551-00;Locus_id=Os03g0374551;Note=Hypothetical gene.;Transcript_evidence=EU947431 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0374551-00;KEGG=Os03t0374551-00
Chr03	irgsp1_rep	five_prime_UTR	14739114	14739131	.	+	.	Parent=Os03t0374551-00
Chr03	irgsp1_rep	CDS	14739132	14739503	.	+	0	Parent=Os03t0374551-00
Chr03	irgsp1_rep	three_prime_UTR	14739504	14739979	.	+	.	Parent=Os03t0374551-00
Chr03	irgsp1_rep	mRNA	14751365	14754907	.	-	.	ID=Os03t0374575-01;Name=Os03t0374575-01;Locus_id=Os03g0374575;CGSNL Gene Symbol=SCL26;CGSNL Gene Name=SC35-LIKE PROTEIN 26;Oryzabase Gene Symbol Synonym(s)=Os-SCL26%2C OsSCL26;Oryzabase Gene Name Synonym(s)=SC35-like protein 26%2C SCL subfamily protein 26;Note=Similar to RNA recognition motif family protein%2C expressed.;Transcript_evidence=AK243058 (DDBJ%2C Best hit);ORF_evidence=Q10KQ7 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J100013P19;Oryzabase=22742;TENOR=Os03t0374575-01;KEGG=Os03t0374575-01
Chr03	irgsp1_rep	five_prime_UTR	14754792	14754907	.	-	.	Parent=Os03t0374575-01
Chr03	irgsp1_rep	five_prime_UTR	14753783	14753788	.	-	.	Parent=Os03t0374575-01
Chr03	irgsp1_rep	CDS	14753637	14753782	.	-	0	Parent=Os03t0374575-01
Chr03	irgsp1_rep	CDS	14753009	14753086	.	-	1	Parent=Os03t0374575-01
Chr03	irgsp1_rep	CDS	14752281	14752445	.	-	1	Parent=Os03t0374575-01
Chr03	irgsp1_rep	CDS	14752043	14752177	.	-	1	Parent=Os03t0374575-01
Chr03	irgsp1_rep	CDS	14751832	14751961	.	-	1	Parent=Os03t0374575-01
Chr03	irgsp1_rep	three_prime_UTR	14751365	14751831	.	-	.	Parent=Os03t0374575-01
Chr03	irgsp1_rep	mRNA	14759852	14767790	.	+	.	ID=Os03t0374600-01;Name=Os03t0374600-01;Locus_id=Os03g0374600;Note=Glycoside hydrolase%2C family 17 protein.;Transcript_evidence=AK120709 (DDBJ%2C Best hit);ORF_evidence=B8AQ96 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J023001F15;Expression=AK120709;TENOR=Os03t0374600-01;KEGG=Os03t0374600-01
Chr03	irgsp1_rep	five_prime_UTR	14759852	14760054	.	+	.	Parent=Os03t0374600-01
Chr03	irgsp1_rep	five_prime_UTR	14764652	14764703	.	+	.	Parent=Os03t0374600-01
Chr03	irgsp1_rep	CDS	14764704	14764770	.	+	0	Parent=Os03t0374600-01
Chr03	irgsp1_rep	CDS	14765685	14766647	.	+	2	Parent=Os03t0374600-01
Chr03	irgsp1_rep	CDS	14766750	14766777	.	+	2	Parent=Os03t0374600-01
Chr03	irgsp1_rep	CDS	14767129	14767507	.	+	1	Parent=Os03t0374600-01
Chr03	irgsp1_rep	three_prime_UTR	14767508	14767790	.	+	.	Parent=Os03t0374600-01
Chr03	irgsp1_rep	mRNA	14765763	14767682	.	+	.	ID=Os03t0374600-02;Name=Os03t0374600-02;Locus_id=Os03g0374600;Note=Similar to Glucan endo-1%2C3-beta-glucosidase 4.;Transcript_evidence=AK110542 (DDBJ%2C Best hit);ORF_evidence=B6TL03 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=002-168-B04;TENOR=Os03t0374600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	14765763	14765875	.	+	.	Parent=Os03t0374600-02
Chr03	irgsp1_rep	CDS	14765876	14766647	.	+	0	Parent=Os03t0374600-02
Chr03	irgsp1_rep	CDS	14766750	14766777	.	+	2	Parent=Os03t0374600-02
Chr03	irgsp1_rep	CDS	14767129	14767507	.	+	1	Parent=Os03t0374600-02
Chr03	irgsp1_rep	three_prime_UTR	14767508	14767682	.	+	.	Parent=Os03t0374600-02
Chr03	irgsp1_rep	mRNA	14784720	14785712	.	-	.	ID=Os03t0374900-00;Name=Os03t0374900-00;Locus_id=Os03g0374900;Oryzabase Gene Symbol Synonym(s)=OsLAT2;Note=Similar to cationic amino acid transporter.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001151329.1 (RefSeq);GO=Biological Process: amino acid transmembrane transport (GO:0003333),Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: amino acid transmembrane transporter activity (GO:0015171);InterPro=Amino acid/polyamine transporter I (IPR002293),Amino acid permease domain (IPR004841);Oryzabase=18553;TENOR=Os03t0374900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	14784720	14785712	.	-	0	Parent=Os03t0374900-00
Chr03	irgsp1_rep	mRNA	14776034	14785731	.	+	.	ID=Os03t0374901-00;Name=Os03t0374901-00;Locus_id=Os03g0374901;Note=Hypothetical protein.;Transcript_evidence=tplb0061g15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0374901-00
Chr03	irgsp1_rep	five_prime_UTR	14776034	14776035	.	+	.	Parent=Os03t0374901-00
Chr03	irgsp1_rep	CDS	14776036	14776588	.	+	0	Parent=Os03t0374901-00
Chr03	irgsp1_rep	CDS	14784760	14785529	.	+	2	Parent=Os03t0374901-00
Chr03	irgsp1_rep	three_prime_UTR	14785530	14785731	.	+	.	Parent=Os03t0374901-00
Chr03	irgsp1_rep	mRNA	14788216	14789968	.	-	.	ID=Os03t0375200-00;Name=Os03t0375200-00;Locus_id=Os03g0375200;Note=Hypothetical conserved gene.;Transcript_evidence=EU957122 (DDBJ);ORF_evidence=Q7Y168 (UniProt);TENOR=Os03t0375200-00;KEGG=Os03t0375200-00
Chr03	irgsp1_rep	five_prime_UTR	14789917	14789968	.	-	.	Parent=Os03t0375200-00
Chr03	irgsp1_rep	CDS	14788219	14789916	.	-	0	Parent=Os03t0375200-00
Chr03	irgsp1_rep	three_prime_UTR	14788216	14788218	.	-	.	Parent=Os03t0375200-00
Chr03	irgsp1_rep	mRNA	14796855	14798032	.	-	.	ID=Os03t0375300-01;Name=Os03t0375300-01;Locus_id=Os03g0375300;Oryzabase Gene Symbol Synonym(s)=OsLAT3;Note=Similar to cationic amino acid transporter.;Transcript_evidence=AK064716 (DDBJ%2C Best hit);ORF_evidence=NP_001151329.1 (RefSeq);GO=Biological Process: amino acid transmembrane transport (GO:0003333),Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: amino acid transmembrane transporter activity (GO:0015171);InterPro=Amino acid/polyamine transporter I (IPR002293),Amino acid permease domain (IPR004841);NIAS_FLcDNA=002-118-D12;Oryzabase=18554;Expression=AK064716;TENOR=Os03t0375300-01;KEGG=Os03t0375300-01
Chr03	irgsp1_rep	five_prime_UTR	14798017	14798032	.	-	.	Parent=Os03t0375300-01
Chr03	irgsp1_rep	CDS	14797030	14798016	.	-	0	Parent=Os03t0375300-01
Chr03	irgsp1_rep	three_prime_UTR	14796855	14797029	.	-	.	Parent=Os03t0375300-01
Chr03	irgsp1_rep	mRNA	14790176	14798028	.	-	.	ID=Os03t0375300-02;Name=Os03t0375300-02;Locus_id=Os03g0375300;Oryzabase Gene Symbol Synonym(s)=OsLAT3;Note=Similar to cationic amino acid transporter.;Transcript_evidence=AK072316 (DDBJ%2C Best hit);ORF_evidence=NP_001151329.1 (RefSeq);GO=Biological Process: amino acid transmembrane transport (GO:0003333),Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: amino acid transmembrane transporter activity (GO:0015171);InterPro=Amino acid/polyamine transporter I (IPR002293),Amino acid permease domain (IPR004841);NIAS_FLcDNA=J023025A17;Oryzabase=18554;TENOR=Os03t0375300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	14798017	14798028	.	-	.	Parent=Os03t0375300-02
Chr03	irgsp1_rep	CDS	14797038	14798016	.	-	0	Parent=Os03t0375300-02
Chr03	irgsp1_rep	CDS	14795753	14795822	.	-	2	Parent=Os03t0375300-02
Chr03	irgsp1_rep	CDS	14790399	14790993	.	-	1	Parent=Os03t0375300-02
Chr03	irgsp1_rep	three_prime_UTR	14790176	14790398	.	-	.	Parent=Os03t0375300-02
Chr03	irgsp1_rep	mRNA	14790176	14796588	.	-	.	ID=Os03t0375300-03;Name=Os03t0375300-03;Locus_id=Os03g0375300;Oryzabase Gene Symbol Synonym(s)=OsLAT3;Note=Similar to cationic amino acid transporter.;Transcript_evidence=AK070119 (DDBJ%2C Best hit);ORF_evidence=NP_001151329.1 (RefSeq);GO=Biological Process: amino acid transmembrane transport (GO:0003333),Cellular Component: membrane (GO:0016020),Molecular Function: amino acid transmembrane transporter activity (GO:0015171);InterPro=Amino acid/polyamine transporter I (IPR002293);NIAS_FLcDNA=J023042F02;Oryzabase=18554;TENOR=Os03t0375300-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	14795808	14796588	.	-	.	Parent=Os03t0375300-03
Chr03	irgsp1_rep	CDS	14795753	14795807	.	-	0	Parent=Os03t0375300-03
Chr03	irgsp1_rep	CDS	14790392	14790993	.	-	2	Parent=Os03t0375300-03
Chr03	irgsp1_rep	three_prime_UTR	14790176	14790391	.	-	.	Parent=Os03t0375300-03
Chr03	irgsp1_rep	mRNA	14790303	14791119	.	+	.	ID=Os03t0375601-00;Name=Os03t0375601-00;Locus_id=Os03g0375601;Note=Hypothetical gene.;Transcript_evidence=CT828575 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os03t0375601-00;KEGG=Os03t0375601-00
Chr03	irgsp1_rep	five_prime_UTR	14790303	14790439	.	+	.	Parent=Os03t0375601-00
Chr03	irgsp1_rep	CDS	14790440	14791072	.	+	0	Parent=Os03t0375601-00
Chr03	irgsp1_rep	three_prime_UTR	14791073	14791119	.	+	.	Parent=Os03t0375601-00
Chr03	irgsp1_rep	mRNA	14806442	14807665	.	+	.	ID=Os03t0375717-00;Name=Os03t0375717-00;Locus_id=Os03g0375717;Note=Conserved hypothetical protein.;Transcript_evidence=FP091438 (DDBJ);ORF_evidence=Q7XL98 (UniProt);TENOR=Os03t0375717-00
Chr03	irgsp1_rep	CDS	14806442	14807008	.	+	0	Parent=Os03t0375717-00
Chr03	irgsp1_rep	three_prime_UTR	14807009	14807270	.	+	.	Parent=Os03t0375717-00
Chr03	irgsp1_rep	three_prime_UTR	14807384	14807665	.	+	.	Parent=Os03t0375717-00
Chr03	irgsp1_rep	mRNA	14832410	14833004	.	-	.	ID=Os03t0375833-01;Name=Os03t0375833-01;Locus_id=Os03g0375833;Note=Non-protein coding transcript.;Transcript_evidence=AK240774 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J053066H17;TENOR=Os03t0375833-01
Chr03	irgsp1_rep	exon	14832410	14833004	.	-	.	Parent=Os03t0375833-01
Chr03	irgsp1_rep	mRNA	14836140	14838125	.	-	.	ID=Os03t0375900-01;Name=Os03t0375900-01;Locus_id=Os03g0375900;Oryzabase Gene Symbol Synonym(s)=OsLAT4%2C LAT4;Note=Amino acid/polyamine transporter I family protein.;Transcript_evidence=AK107064 (DDBJ%2C Best hit);ORF_evidence=Q10KP6 (UniProt);NIAS_FLcDNA=002-121-E04;Oryzabase=18555;Expression=AK107064;TENOR=Os03t0375900-01;KEGG=Os03t0375900-01
Chr03	irgsp1_rep	five_prime_UTR	14836957	14838125	.	-	.	Parent=Os03t0375900-01
Chr03	irgsp1_rep	CDS	14836333	14836956	.	-	0	Parent=Os03t0375900-01
Chr03	irgsp1_rep	three_prime_UTR	14836140	14836332	.	-	.	Parent=Os03t0375900-01
Chr03	irgsp1_rep	mRNA	14836412	14839028	.	+	.	ID=Os03t0375933-00;Name=Os03t0375933-00;Locus_id=Os03g0375933;Note=Hypothetical protein.;Transcript_evidence=tplb0061g15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0375933-00
Chr03	irgsp1_rep	five_prime_UTR	14836412	14836879	.	+	.	Parent=Os03t0375933-00
Chr03	irgsp1_rep	CDS	14836880	14836958	.	+	0	Parent=Os03t0375933-00
Chr03	irgsp1_rep	CDS	14838248	14839028	.	+	2	Parent=Os03t0375933-00
Chr03	irgsp1_rep	mRNA	14838184	14839122	.	-	.	ID=Os03t0375966-00;Name=Os03t0375966-00;Locus_id=Os03g0375966;Oryzabase Gene Symbol Synonym(s)=OsLAT4%2C LAT4;Note=Similar to Amino acid permease family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10KP6 (UniProt);GO=Biological Process: amino acid transmembrane transport (GO:0003333),Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: amino acid transmembrane transporter activity (GO:0015171);InterPro=Amino acid/polyamine transporter I (IPR002293),Amino acid permease domain (IPR004841);Oryzabase=18555;TENOR=Os03t0375966-00
Chr03	irgsp1_rep	CDS	14838184	14839122	.	-	0	Parent=Os03t0375966-00
Chr03	irgsp1_rep	mRNA	14843823	14847345	.	-	.	ID=Os03t0376000-01;Name=Os03t0376000-01;Locus_id=Os03g0376000;Note=emp24/gp25L/p24 family protein.;Transcript_evidence=AK059565 (DDBJ%2C Best hit);ORF_evidence=NP_001151722.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Cellular Component: integral to membrane (GO:0016021);InterPro=GOLD (IPR009038);NIAS_FLcDNA=001-029-H07;Expression=AK059565;TENOR=Os03t0376000-01;KEGG=Os03t0376000-01
Chr03	irgsp1_rep	five_prime_UTR	14847195	14847345	.	-	.	Parent=Os03t0376000-01
Chr03	irgsp1_rep	CDS	14846718	14847194	.	-	0	Parent=Os03t0376000-01
Chr03	irgsp1_rep	CDS	14844263	14844339	.	-	0	Parent=Os03t0376000-01
Chr03	irgsp1_rep	CDS	14844034	14844178	.	-	1	Parent=Os03t0376000-01
Chr03	irgsp1_rep	three_prime_UTR	14843823	14844033	.	-	.	Parent=Os03t0376000-01
Chr03	irgsp1_rep	mRNA	14850286	14852220	.	-	.	ID=Os03t0376100-01;Name=Os03t0376100-01;Locus_id=Os03g0376100;CGSNL Gene Symbol=CGS5;CGSNL Gene Name=CYSTATHIONINE GAMMA-SYNTHASE 5;Oryzabase Gene Symbol Synonym(s)=OsaCGS5%2C OsCGS5;Oryzabase Gene Name Synonym(s)=cystathionine gamma-synthase 5;Note=Similar to Cystathionine gamma-synthase (Fragment).;Transcript_evidence=AK060421 (DDBJ%2C Best hit);ORF_evidence=Q9FR94 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Cys/Met metabolism%2C pyridoxal phosphate-dependent enzyme (IPR000277),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=001-010-G06;Oryzabase=22909;Expression=AK060421;TENOR=Os03t0376100-01;KEGG=Os03t0376100-01 (EC:4.4.1.1)
Chr03	irgsp1_rep	CDS	14852017	14852220	.	-	0	Parent=Os03t0376100-01
Chr03	irgsp1_rep	CDS	14851856	14851942	.	-	0	Parent=Os03t0376100-01
Chr03	irgsp1_rep	CDS	14851487	14851594	.	-	0	Parent=Os03t0376100-01
Chr03	irgsp1_rep	CDS	14851288	14851383	.	-	0	Parent=Os03t0376100-01
Chr03	irgsp1_rep	CDS	14851087	14851205	.	-	0	Parent=Os03t0376100-01
Chr03	irgsp1_rep	CDS	14850885	14851005	.	-	1	Parent=Os03t0376100-01
Chr03	irgsp1_rep	three_prime_UTR	14850286	14850884	.	-	.	Parent=Os03t0376100-01
Chr03	irgsp1_rep	mRNA	14850657	14852107	.	-	.	ID=Os03t0376100-02;Name=Os03t0376100-02;Locus_id=Os03g0376100;CGSNL Gene Symbol=CGS5;CGSNL Gene Name=CYSTATHIONINE GAMMA-SYNTHASE 5;Oryzabase Gene Symbol Synonym(s)=OsaCGS5%2C OsCGS5;Oryzabase Gene Name Synonym(s)=cystathionine gamma-synthase 5;Note=Similar to Cystathionine gamma-synthase (Fragment).;Transcript_evidence=AK058961 (DDBJ%2C Best hit);ORF_evidence=Q9FR94 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Cys/Met metabolism%2C pyridoxal phosphate-dependent enzyme (IPR000277),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=001-020-B12;Oryzabase=22909;Expression=AK058961;TENOR=Os03t0376100-02;KEGG=Os03t0376100-02 (EC:4.4.1.1)
Chr03	irgsp1_rep	five_prime_UTR	14852107	14852107	.	-	.	Parent=Os03t0376100-02
Chr03	irgsp1_rep	CDS	14852017	14852106	.	-	0	Parent=Os03t0376100-02
Chr03	irgsp1_rep	CDS	14851856	14851942	.	-	0	Parent=Os03t0376100-02
Chr03	irgsp1_rep	CDS	14851487	14851594	.	-	0	Parent=Os03t0376100-02
Chr03	irgsp1_rep	CDS	14851288	14851383	.	-	0	Parent=Os03t0376100-02
Chr03	irgsp1_rep	CDS	14851087	14851205	.	-	0	Parent=Os03t0376100-02
Chr03	irgsp1_rep	CDS	14850885	14851005	.	-	1	Parent=Os03t0376100-02
Chr03	irgsp1_rep	three_prime_UTR	14850657	14850884	.	-	.	Parent=Os03t0376100-02
Chr03	irgsp1_rep	mRNA	14854768	14860453	.	+	.	ID=Os03t0376350-01;Name=Os03t0376350-01;Locus_id=Os03g0376350;Note=Hypothetical gene.;Transcript_evidence=AK288647 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090056K16;TENOR=Os03t0376350-01;KEGG=Os03t0376350-01
Chr03	irgsp1_rep	five_prime_UTR	14854768	14858689	.	+	.	Parent=Os03t0376350-01
Chr03	irgsp1_rep	CDS	14858690	14859019	.	+	0	Parent=Os03t0376350-01
Chr03	irgsp1_rep	three_prime_UTR	14859020	14860453	.	+	.	Parent=Os03t0376350-01
Chr03	irgsp1_rep	mRNA	14866657	14868757	.	-	.	ID=Os03t0376600-01;Name=Os03t0376600-01;Locus_id=Os03g0376600;Note=Similar to 29 kDa ribonucleoprotein%2C chloroplast precursor (RNA-binding protein cp29).;Transcript_evidence=AK068720 (DDBJ%2C Best hit),AK109412 (DDBJ%2C Best hit);ORF_evidence=NP_001148607.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013169L09,006-303-G07;Expression=AK068720;TENOR=Os03t0376600-01;KEGG=Os03t0376600-01
Chr03	irgsp1_rep	five_prime_UTR	14868668	14868757	.	-	.	Parent=Os03t0376600-01
Chr03	irgsp1_rep	CDS	14868320	14868667	.	-	0	Parent=Os03t0376600-01
Chr03	irgsp1_rep	CDS	14867726	14867827	.	-	0	Parent=Os03t0376600-01
Chr03	irgsp1_rep	CDS	14867110	14867391	.	-	0	Parent=Os03t0376600-01
Chr03	irgsp1_rep	CDS	14866940	14867005	.	-	0	Parent=Os03t0376600-01
Chr03	irgsp1_rep	three_prime_UTR	14866657	14866939	.	-	.	Parent=Os03t0376600-01
Chr03	irgsp1_rep	mRNA	14867734	14868656	.	+	.	ID=Os03t0376701-00;Name=Os03t0376701-00;Locus_id=Os03g0376701;Note=Hypothetical gene.;Transcript_evidence=BT087008 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0376701-00;KEGG=Os03t0376701-00
Chr03	irgsp1_rep	five_prime_UTR	14867734	14867734	.	+	.	Parent=Os03t0376701-00
Chr03	irgsp1_rep	CDS	14867735	14867807	.	+	0	Parent=Os03t0376701-00
Chr03	irgsp1_rep	CDS	14868298	14868656	.	+	2	Parent=Os03t0376701-00
Chr03	irgsp1_rep	mRNA	14869717	14869962	.	-	.	ID=Os03t0376750-00;Name=Os03t0376750-00;Locus_id=Os03g0376750;Note=Non-protein coding transcript.;Transcript_evidence=EU942950 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0376750-00
Chr03	irgsp1_rep	exon	14869717	14869962	.	-	.	Parent=Os03t0376750-00
Chr03	irgsp1_rep	mRNA	14872894	14876656	.	-	.	ID=Os03t0376800-01;Name=Os03t0376800-01;Locus_id=Os03g0376800;Note=K Homology%2C type 1%2C subgroup domain containing protein.;Transcript_evidence=AK069760 (DDBJ%2C Best hit);ORF_evidence=XP_002871657.1 (RefSeq);GO=Molecular Function: RNA binding (GO:0003723);InterPro=K Homology (IPR004087),K Homology%2C type 1 (IPR004088),K Homology%2C type 1%2C subgroup (IPR018111);NIAS_FLcDNA=J023031F14;Expression=AK069760;TENOR=Os03t0376800-01;KEGG=Os03t0376800-01
Chr03	irgsp1_rep	five_prime_UTR	14876513	14876656	.	-	.	Parent=Os03t0376800-01
Chr03	irgsp1_rep	five_prime_UTR	14875797	14875799	.	-	.	Parent=Os03t0376800-01
Chr03	irgsp1_rep	CDS	14875224	14875796	.	-	0	Parent=Os03t0376800-01
Chr03	irgsp1_rep	CDS	14874489	14874911	.	-	0	Parent=Os03t0376800-01
Chr03	irgsp1_rep	CDS	14874139	14874396	.	-	0	Parent=Os03t0376800-01
Chr03	irgsp1_rep	CDS	14873786	14874052	.	-	0	Parent=Os03t0376800-01
Chr03	irgsp1_rep	CDS	14873646	14873704	.	-	0	Parent=Os03t0376800-01
Chr03	irgsp1_rep	CDS	14873405	14873453	.	-	1	Parent=Os03t0376800-01
Chr03	irgsp1_rep	three_prime_UTR	14873381	14873404	.	-	.	Parent=Os03t0376800-01
Chr03	irgsp1_rep	three_prime_UTR	14872894	14873213	.	-	.	Parent=Os03t0376800-01
Chr03	irgsp1_rep	mRNA	14872027	14876653	.	-	.	ID=Os03t0376800-02;Name=Os03t0376800-02;Locus_id=Os03g0376800;Note=K Homology%2C type 1%2C subgroup domain containing protein.;Transcript_evidence=AK065781 (DDBJ%2C Best hit);ORF_evidence=XP_002871657.1 (RefSeq);GO=Molecular Function: RNA binding (GO:0003723);InterPro=K Homology (IPR004087),K Homology%2C type 1 (IPR004088),K Homology%2C type 1%2C subgroup (IPR018111);NIAS_FLcDNA=J013040N11;Expression=AK065781;TENOR=Os03t0376800-02;KEGG=Os03t0376800-02
Chr03	irgsp1_rep	five_prime_UTR	14876513	14876653	.	-	.	Parent=Os03t0376800-02
Chr03	irgsp1_rep	five_prime_UTR	14875797	14875799	.	-	.	Parent=Os03t0376800-02
Chr03	irgsp1_rep	CDS	14875224	14875796	.	-	0	Parent=Os03t0376800-02
Chr03	irgsp1_rep	CDS	14874489	14874911	.	-	0	Parent=Os03t0376800-02
Chr03	irgsp1_rep	CDS	14874139	14874396	.	-	0	Parent=Os03t0376800-02
Chr03	irgsp1_rep	CDS	14873786	14874052	.	-	0	Parent=Os03t0376800-02
Chr03	irgsp1_rep	CDS	14873646	14873704	.	-	0	Parent=Os03t0376800-02
Chr03	irgsp1_rep	CDS	14873405	14873453	.	-	1	Parent=Os03t0376800-02
Chr03	irgsp1_rep	three_prime_UTR	14872027	14873404	.	-	.	Parent=Os03t0376800-02
Chr03	irgsp1_rep	mRNA	14872125	14876600	.	-	.	ID=Os03t0376800-03;Name=Os03t0376800-03;Locus_id=Os03g0376800;Note=K Homology%2C type 1%2C subgroup domain containing protein.;Transcript_evidence=AK067678 (DDBJ%2C Best hit);ORF_evidence=XP_002871657.1 (RefSeq);GO=Molecular Function: RNA binding (GO:0003723);InterPro=K Homology (IPR004087),K Homology%2C type 1 (IPR004088),K Homology%2C type 1%2C subgroup (IPR018111);NIAS_FLcDNA=J013116I07;Expression=AK067678;TENOR=Os03t0376800-03;KEGG=Os03t0376800-03
Chr03	irgsp1_rep	five_prime_UTR	14876513	14876600	.	-	.	Parent=Os03t0376800-03
Chr03	irgsp1_rep	five_prime_UTR	14875797	14875799	.	-	.	Parent=Os03t0376800-03
Chr03	irgsp1_rep	CDS	14875224	14875796	.	-	0	Parent=Os03t0376800-03
Chr03	irgsp1_rep	CDS	14874489	14874911	.	-	0	Parent=Os03t0376800-03
Chr03	irgsp1_rep	CDS	14874139	14874396	.	-	0	Parent=Os03t0376800-03
Chr03	irgsp1_rep	CDS	14873786	14874052	.	-	0	Parent=Os03t0376800-03
Chr03	irgsp1_rep	CDS	14873646	14873704	.	-	0	Parent=Os03t0376800-03
Chr03	irgsp1_rep	CDS	14873405	14873453	.	-	1	Parent=Os03t0376800-03
Chr03	irgsp1_rep	three_prime_UTR	14873381	14873404	.	-	.	Parent=Os03t0376800-03
Chr03	irgsp1_rep	three_prime_UTR	14872125	14873213	.	-	.	Parent=Os03t0376800-03
Chr03	irgsp1_rep	mRNA	14872152	14876597	.	-	.	ID=Os03t0376800-04;Name=Os03t0376800-04;Locus_id=Os03g0376800;Note=K Homology%2C type 1%2C subgroup domain containing protein.;Transcript_evidence=AK101145 (DDBJ%2C Best hit);ORF_evidence=XP_002871657.1 (RefSeq);GO=Molecular Function: RNA binding (GO:0003723);InterPro=K Homology (IPR004087),K Homology%2C type 1 (IPR004088),K Homology%2C type 1%2C subgroup (IPR018111);NIAS_FLcDNA=J033026O12;Expression=AK101145;TENOR=Os03t0376800-04;KEGG=Os03t0376800-04
Chr03	irgsp1_rep	five_prime_UTR	14876513	14876597	.	-	.	Parent=Os03t0376800-04
Chr03	irgsp1_rep	five_prime_UTR	14875797	14875799	.	-	.	Parent=Os03t0376800-04
Chr03	irgsp1_rep	CDS	14875224	14875796	.	-	0	Parent=Os03t0376800-04
Chr03	irgsp1_rep	CDS	14874489	14874911	.	-	0	Parent=Os03t0376800-04
Chr03	irgsp1_rep	CDS	14874139	14874396	.	-	0	Parent=Os03t0376800-04
Chr03	irgsp1_rep	CDS	14873786	14874052	.	-	0	Parent=Os03t0376800-04
Chr03	irgsp1_rep	CDS	14873646	14873704	.	-	0	Parent=Os03t0376800-04
Chr03	irgsp1_rep	CDS	14873405	14873453	.	-	1	Parent=Os03t0376800-04
Chr03	irgsp1_rep	three_prime_UTR	14872152	14873404	.	-	.	Parent=Os03t0376800-04
Chr03	irgsp1_rep	mRNA	14872969	14875443	.	-	.	ID=Os03t0376800-05;Name=Os03t0376800-05;Locus_id=Os03g0376800;Note=Hypothetical conserved gene.;Transcript_evidence=AK062206 (DDBJ%2C Best hit);ORF_evidence=XP_002871657.1 (RefSeq);GO=Molecular Function: RNA binding (GO:0003723);InterPro=K Homology (IPR004087),K Homology%2C type 1 (IPR004088),K Homology%2C type 1%2C subgroup (IPR018111);NIAS_FLcDNA=001-046-H05;Expression=AK062206;TENOR=Os03t0376800-05;KEGG=Os03t0376800-05
Chr03	irgsp1_rep	five_prime_UTR	14875443	14875443	.	-	.	Parent=Os03t0376800-05
Chr03	irgsp1_rep	CDS	14875224	14875442	.	-	0	Parent=Os03t0376800-05
Chr03	irgsp1_rep	CDS	14874489	14874911	.	-	0	Parent=Os03t0376800-05
Chr03	irgsp1_rep	CDS	14874139	14874396	.	-	0	Parent=Os03t0376800-05
Chr03	irgsp1_rep	CDS	14873786	14874052	.	-	0	Parent=Os03t0376800-05
Chr03	irgsp1_rep	CDS	14873646	14873704	.	-	0	Parent=Os03t0376800-05
Chr03	irgsp1_rep	CDS	14873405	14873453	.	-	1	Parent=Os03t0376800-05
Chr03	irgsp1_rep	three_prime_UTR	14873381	14873404	.	-	.	Parent=Os03t0376800-05
Chr03	irgsp1_rep	three_prime_UTR	14872969	14873213	.	-	.	Parent=Os03t0376800-05
Chr03	irgsp1_rep	mRNA	14878752	14883578	.	+	.	ID=Os03t0376900-01;Name=Os03t0376900-01;Locus_id=Os03g0376900;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK101213 (DDBJ%2C Best hit);ORF_evidence=NP_001151769.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033031B03;Expression=AK101213;TENOR=Os03t0376900-01;KEGG=Os03t0376900-01
Chr03	irgsp1_rep	five_prime_UTR	14878752	14878926	.	+	.	Parent=Os03t0376900-01
Chr03	irgsp1_rep	CDS	14878927	14879121	.	+	0	Parent=Os03t0376900-01
Chr03	irgsp1_rep	CDS	14880043	14880252	.	+	0	Parent=Os03t0376900-01
Chr03	irgsp1_rep	CDS	14880971	14881033	.	+	0	Parent=Os03t0376900-01
Chr03	irgsp1_rep	CDS	14881115	14881188	.	+	0	Parent=Os03t0376900-01
Chr03	irgsp1_rep	CDS	14881286	14881381	.	+	1	Parent=Os03t0376900-01
Chr03	irgsp1_rep	CDS	14881987	14882041	.	+	1	Parent=Os03t0376900-01
Chr03	irgsp1_rep	CDS	14882149	14882253	.	+	0	Parent=Os03t0376900-01
Chr03	irgsp1_rep	CDS	14882336	14882417	.	+	0	Parent=Os03t0376900-01
Chr03	irgsp1_rep	CDS	14882732	14882844	.	+	2	Parent=Os03t0376900-01
Chr03	irgsp1_rep	CDS	14882999	14883400	.	+	0	Parent=Os03t0376900-01
Chr03	irgsp1_rep	three_prime_UTR	14883401	14883578	.	+	.	Parent=Os03t0376900-01
Chr03	irgsp1_rep	mRNA	14878797	14883547	.	+	.	ID=Os03t0376900-02;Name=Os03t0376900-02;Locus_id=Os03g0376900;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK062562 (DDBJ%2C Best hit);ORF_evidence=NP_001151769.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-045-E01;Expression=AK062562;TENOR=Os03t0376900-02;KEGG=Os03t0376900-02
Chr03	irgsp1_rep	five_prime_UTR	14878797	14878926	.	+	.	Parent=Os03t0376900-02
Chr03	irgsp1_rep	CDS	14878927	14879121	.	+	0	Parent=Os03t0376900-02
Chr03	irgsp1_rep	CDS	14880043	14880252	.	+	0	Parent=Os03t0376900-02
Chr03	irgsp1_rep	CDS	14880971	14881033	.	+	0	Parent=Os03t0376900-02
Chr03	irgsp1_rep	CDS	14881115	14881188	.	+	0	Parent=Os03t0376900-02
Chr03	irgsp1_rep	CDS	14881286	14881381	.	+	1	Parent=Os03t0376900-02
Chr03	irgsp1_rep	CDS	14881987	14882041	.	+	1	Parent=Os03t0376900-02
Chr03	irgsp1_rep	CDS	14882149	14882253	.	+	0	Parent=Os03t0376900-02
Chr03	irgsp1_rep	CDS	14882336	14882417	.	+	0	Parent=Os03t0376900-02
Chr03	irgsp1_rep	CDS	14882732	14882844	.	+	2	Parent=Os03t0376900-02
Chr03	irgsp1_rep	CDS	14882999	14883400	.	+	0	Parent=Os03t0376900-02
Chr03	irgsp1_rep	three_prime_UTR	14883401	14883547	.	+	.	Parent=Os03t0376900-02
Chr03	irgsp1_rep	mRNA	14894714	14896143	.	+	.	ID=Os03t0377100-01;Name=Os03t0377100-01;Locus_id=Os03g0377100;CGSNL Gene Symbol=EXPA21;CGSNL Gene Name=ALPHA-EXPANSIN 21;Oryzabase Gene Symbol Synonym(s)=OsEXPA21%2C OsEXP21%2C osaEXPa1.21;Oryzabase Gene Name Synonym(s)=Rice expansin-21%2C Expansin-A21%2C Alpha-expansin-21;Note=Similar to Expansin (Expansin2).;Transcript_evidence=AK287451 (DDBJ%2C Best hit);ORF_evidence=Q10KN4 (UniProt);GO=Biological Process: plant-type cell wall organization (GO:0009664),Cellular Component: extracellular region (GO:0005576);InterPro=Expansin (IPR002963),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);NIAS_FLcDNA=J043017M15;Oryzabase=9384;TENOR=Os03t0377100-01;KEGG=Os03t0377100-01
Chr03	irgsp1_rep	five_prime_UTR	14894714	14894791	.	+	.	Parent=Os03t0377100-01
Chr03	irgsp1_rep	CDS	14894792	14894933	.	+	0	Parent=Os03t0377100-01
Chr03	irgsp1_rep	CDS	14895024	14895360	.	+	2	Parent=Os03t0377100-01
Chr03	irgsp1_rep	CDS	14895730	14896045	.	+	1	Parent=Os03t0377100-01
Chr03	irgsp1_rep	three_prime_UTR	14896046	14896143	.	+	.	Parent=Os03t0377100-01
Chr03	irgsp1_rep	mRNA	14895064	14896045	.	-	.	ID=Os03t0377201-00;Name=Os03t0377201-00;Locus_id=Os03g0377201;Note=Hypothetical gene.;Transcript_evidence=BT016845 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0377201-00
Chr03	irgsp1_rep	CDS	14895728	14896045	.	-	0	Parent=Os03t0377201-00
Chr03	irgsp1_rep	CDS	14895064	14895358	.	-	0	Parent=Os03t0377201-00
Chr03	irgsp1_rep	mRNA	14899846	14906903	.	+	.	ID=Os03t0377300-01;Name=Os03t0377300-01;Locus_id=Os03g0377300;Note=Conserved hypothetical protein.;Transcript_evidence=AK066201 (DDBJ%2C Best hit);ORF_evidence=Q8S7F9 (UniProt);NIAS_FLcDNA=J013052K22;TENOR=Os03t0377300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	14899846	14899903	.	+	.	Parent=Os03t0377300-01
Chr03	irgsp1_rep	CDS	14899904	14900112	.	+	0	Parent=Os03t0377300-01
Chr03	irgsp1_rep	CDS	14900484	14900598	.	+	1	Parent=Os03t0377300-01
Chr03	irgsp1_rep	CDS	14900711	14900914	.	+	0	Parent=Os03t0377300-01
Chr03	irgsp1_rep	CDS	14901144	14901272	.	+	0	Parent=Os03t0377300-01
Chr03	irgsp1_rep	CDS	14901359	14901526	.	+	0	Parent=Os03t0377300-01
Chr03	irgsp1_rep	CDS	14902202	14902468	.	+	0	Parent=Os03t0377300-01
Chr03	irgsp1_rep	three_prime_UTR	14902469	14904577	.	+	.	Parent=Os03t0377300-01
Chr03	irgsp1_rep	three_prime_UTR	14905414	14905486	.	+	.	Parent=Os03t0377300-01
Chr03	irgsp1_rep	three_prime_UTR	14905573	14905601	.	+	.	Parent=Os03t0377300-01
Chr03	irgsp1_rep	three_prime_UTR	14905707	14905830	.	+	.	Parent=Os03t0377300-01
Chr03	irgsp1_rep	three_prime_UTR	14906023	14906133	.	+	.	Parent=Os03t0377300-01
Chr03	irgsp1_rep	three_prime_UTR	14906364	14906464	.	+	.	Parent=Os03t0377300-01
Chr03	irgsp1_rep	three_prime_UTR	14906545	14906903	.	+	.	Parent=Os03t0377300-01
Chr03	irgsp1_rep	mRNA	14916538	14924273	.	+	.	ID=Os03t0377500-01;Name=Os03t0377500-01;Locus_id=Os03g0377500;Note=Nuclear control of ATP synthase 2 domain containing protein.;Transcript_evidence=AK058603 (DDBJ%2C Best hit);ORF_evidence=Q10KN0 (UniProt);InterPro=Nuclear control of ATP synthase 2 (IPR013946);NIAS_FLcDNA=001-017-H12;TENOR=Os03t0377500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	14916538	14916538	.	+	.	Parent=Os03t0377500-01
Chr03	irgsp1_rep	CDS	14916539	14916664	.	+	0	Parent=Os03t0377500-01
Chr03	irgsp1_rep	CDS	14916896	14917024	.	+	0	Parent=Os03t0377500-01
Chr03	irgsp1_rep	CDS	14917104	14917271	.	+	0	Parent=Os03t0377500-01
Chr03	irgsp1_rep	CDS	14918668	14918862	.	+	0	Parent=Os03t0377500-01
Chr03	irgsp1_rep	CDS	14919618	14919718	.	+	0	Parent=Os03t0377500-01
Chr03	irgsp1_rep	CDS	14920404	14920493	.	+	1	Parent=Os03t0377500-01
Chr03	irgsp1_rep	CDS	14921989	14922061	.	+	1	Parent=Os03t0377500-01
Chr03	irgsp1_rep	CDS	14922147	14922175	.	+	0	Parent=Os03t0377500-01
Chr03	irgsp1_rep	CDS	14922282	14922405	.	+	1	Parent=Os03t0377500-01
Chr03	irgsp1_rep	CDS	14922934	14923044	.	+	0	Parent=Os03t0377500-01
Chr03	irgsp1_rep	CDS	14923660	14923760	.	+	0	Parent=Os03t0377500-01
Chr03	irgsp1_rep	CDS	14923853	14923985	.	+	1	Parent=Os03t0377500-01
Chr03	irgsp1_rep	three_prime_UTR	14923986	14924273	.	+	.	Parent=Os03t0377500-01
Chr03	irgsp1_rep	mRNA	14919228	14924261	.	+	.	ID=Os03t0377500-02;Name=Os03t0377500-02;Locus_id=Os03g0377500;Note=Nuclear control of ATP synthase 2 domain containing protein.;Transcript_evidence=AK102634 (DDBJ%2C Best hit);ORF_evidence=Q10KN0 (UniProt);InterPro=Nuclear control of ATP synthase 2 (IPR013946);NIAS_FLcDNA=J033099N04;TENOR=Os03t0377500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	14919228	14920356	.	+	.	Parent=Os03t0377500-02
Chr03	irgsp1_rep	CDS	14920357	14920493	.	+	0	Parent=Os03t0377500-02
Chr03	irgsp1_rep	CDS	14921989	14922124	.	+	1	Parent=Os03t0377500-02
Chr03	irgsp1_rep	three_prime_UTR	14922125	14922405	.	+	.	Parent=Os03t0377500-02
Chr03	irgsp1_rep	three_prime_UTR	14922934	14923044	.	+	.	Parent=Os03t0377500-02
Chr03	irgsp1_rep	three_prime_UTR	14923660	14923760	.	+	.	Parent=Os03t0377500-02
Chr03	irgsp1_rep	three_prime_UTR	14923853	14924261	.	+	.	Parent=Os03t0377500-02
Chr03	irgsp1_rep	mRNA	14925199	14926082	.	-	.	ID=Os03t0377600-01;Name=Os03t0377600-01;Locus_id=Os03g0377600;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK110517 (DDBJ%2C Best hit);ORF_evidence=Q8S7F5 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=002-167-G10;Expression=AK110517;TENOR=Os03t0377600-01;KEGG=Os03t0377600-01
Chr03	irgsp1_rep	five_prime_UTR	14925889	14926082	.	-	.	Parent=Os03t0377600-01
Chr03	irgsp1_rep	CDS	14925247	14925888	.	-	0	Parent=Os03t0377600-01
Chr03	irgsp1_rep	three_prime_UTR	14925199	14925246	.	-	.	Parent=Os03t0377600-01
Chr03	irgsp1_rep	mRNA	14926417	14930396	.	-	.	ID=Os03t0377700-01;Name=Os03t0377700-01;Locus_id=Os03g0377700;CGSNL Gene Symbol=CSLA5;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE A5;Oryzabase Gene Symbol Synonym(s)=OsCslA5%2C OsCSLA5;Note=Cellulose synthase-like A5.;Transcript_evidence=AK111424 (DDBJ%2C Best hit);ORF_evidence=B7EA33 (UniProt);InterPro=Glycosyl transferase%2C family 2 (IPR001173);NIAS_FLcDNA=002-182-G12;Oryzabase=13883;Expression=AK111424;TENOR=Os03t0377700-01;KEGG=Os03t0377700-01
Chr03	irgsp1_rep	five_prime_UTR	14930322	14930396	.	-	.	Parent=Os03t0377700-01
Chr03	irgsp1_rep	CDS	14930213	14930321	.	-	0	Parent=Os03t0377700-01
Chr03	irgsp1_rep	CDS	14929787	14930118	.	-	2	Parent=Os03t0377700-01
Chr03	irgsp1_rep	CDS	14929608	14929706	.	-	0	Parent=Os03t0377700-01
Chr03	irgsp1_rep	CDS	14928255	14928507	.	-	0	Parent=Os03t0377700-01
Chr03	irgsp1_rep	CDS	14927887	14927997	.	-	2	Parent=Os03t0377700-01
Chr03	irgsp1_rep	CDS	14927668	14927804	.	-	2	Parent=Os03t0377700-01
Chr03	irgsp1_rep	CDS	14927479	14927592	.	-	0	Parent=Os03t0377700-01
Chr03	irgsp1_rep	CDS	14927199	14927398	.	-	0	Parent=Os03t0377700-01
Chr03	irgsp1_rep	CDS	14926898	14927095	.	-	1	Parent=Os03t0377700-01
Chr03	irgsp1_rep	CDS	14926619	14926790	.	-	1	Parent=Os03t0377700-01
Chr03	irgsp1_rep	three_prime_UTR	14926417	14926618	.	-	.	Parent=Os03t0377700-01
Chr03	irgsp1_rep	mRNA	14938457	14942303	.	+	.	ID=Os03t0378000-01;Name=Os03t0378000-01;Locus_id=Os03g0378000;Note=Nucleoside phosphatase GDA1/CD39 family protein.;Transcript_evidence=AK099806 (DDBJ%2C Best hit);ORF_evidence=NP_565293.1 (RefSeq);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Nucleoside phosphatase GDA1/CD39 (IPR000407);NIAS_FLcDNA=J013098F17;Expression=AK099806;TENOR=Os03t0378000-01;KEGG=Os03t0378000-01
Chr03	irgsp1_rep	five_prime_UTR	14938457	14938574	.	+	.	Parent=Os03t0378000-01
Chr03	irgsp1_rep	CDS	14938575	14939103	.	+	0	Parent=Os03t0378000-01
Chr03	irgsp1_rep	CDS	14939625	14939737	.	+	2	Parent=Os03t0378000-01
Chr03	irgsp1_rep	CDS	14940005	14940112	.	+	0	Parent=Os03t0378000-01
Chr03	irgsp1_rep	CDS	14940213	14940255	.	+	0	Parent=Os03t0378000-01
Chr03	irgsp1_rep	CDS	14940736	14940918	.	+	2	Parent=Os03t0378000-01
Chr03	irgsp1_rep	CDS	14941318	14941415	.	+	2	Parent=Os03t0378000-01
Chr03	irgsp1_rep	CDS	14941498	14941692	.	+	0	Parent=Os03t0378000-01
Chr03	irgsp1_rep	CDS	14941792	14942049	.	+	0	Parent=Os03t0378000-01
Chr03	irgsp1_rep	three_prime_UTR	14942050	14942303	.	+	.	Parent=Os03t0378000-01
Chr03	irgsp1_rep	mRNA	14946659	14953267	.	+	.	ID=Os03t0378200-01;Name=Os03t0378200-01;Locus_id=Os03g0378200;Note=GWT1 family protein.;Transcript_evidence=AK070099 (DDBJ%2C Best hit);ORF_evidence=A2XHC1 (UniProt);GO=Biological Process: GPI anchor biosynthetic process (GO:0006506),Cellular Component: endoplasmic reticulum membrane (GO:0005789),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=GWT1 (IPR009447);NIAS_FLcDNA=J023042E14;Expression=AK070099;TENOR=Os03t0378200-01;KEGG=Os03t0378200-01
Chr03	irgsp1_rep	five_prime_UTR	14946659	14946838	.	+	.	Parent=Os03t0378200-01
Chr03	irgsp1_rep	CDS	14946839	14946882	.	+	0	Parent=Os03t0378200-01
Chr03	irgsp1_rep	CDS	14946968	14947031	.	+	1	Parent=Os03t0378200-01
Chr03	irgsp1_rep	CDS	14947109	14947142	.	+	0	Parent=Os03t0378200-01
Chr03	irgsp1_rep	CDS	14947590	14947720	.	+	2	Parent=Os03t0378200-01
Chr03	irgsp1_rep	CDS	14947937	14948010	.	+	0	Parent=Os03t0378200-01
Chr03	irgsp1_rep	CDS	14948151	14948229	.	+	1	Parent=Os03t0378200-01
Chr03	irgsp1_rep	CDS	14948336	14948425	.	+	0	Parent=Os03t0378200-01
Chr03	irgsp1_rep	CDS	14948683	14948756	.	+	0	Parent=Os03t0378200-01
Chr03	irgsp1_rep	CDS	14949599	14949686	.	+	1	Parent=Os03t0378200-01
Chr03	irgsp1_rep	CDS	14949936	14950062	.	+	0	Parent=Os03t0378200-01
Chr03	irgsp1_rep	CDS	14950146	14950250	.	+	2	Parent=Os03t0378200-01
Chr03	irgsp1_rep	CDS	14950728	14950851	.	+	2	Parent=Os03t0378200-01
Chr03	irgsp1_rep	CDS	14950933	14950984	.	+	1	Parent=Os03t0378200-01
Chr03	irgsp1_rep	CDS	14952194	14952238	.	+	0	Parent=Os03t0378200-01
Chr03	irgsp1_rep	CDS	14952809	14952907	.	+	0	Parent=Os03t0378200-01
Chr03	irgsp1_rep	CDS	14953054	14953206	.	+	0	Parent=Os03t0378200-01
Chr03	irgsp1_rep	three_prime_UTR	14953207	14953267	.	+	.	Parent=Os03t0378200-01
Chr03	irgsp1_rep	mRNA	14946969	14953208	.	-	.	ID=Os03t0378275-00;Name=Os03t0378275-00;Locus_id=Os03g0378275;Note=Non-protein coding transcript.;Transcript_evidence=tplb0035g04 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os03t0378275-00
Chr03	irgsp1_rep	exon	14953052	14953208	.	-	.	Parent=Os03t0378275-00
Chr03	irgsp1_rep	exon	14952782	14952904	.	-	.	Parent=Os03t0378275-00
Chr03	irgsp1_rep	exon	14950931	14951011	.	-	.	Parent=Os03t0378275-00
Chr03	irgsp1_rep	exon	14950727	14950844	.	-	.	Parent=Os03t0378275-00
Chr03	irgsp1_rep	exon	14950156	14950249	.	-	.	Parent=Os03t0378275-00
Chr03	irgsp1_rep	exon	14949939	14950065	.	-	.	Parent=Os03t0378275-00
Chr03	irgsp1_rep	exon	14949582	14949689	.	-	.	Parent=Os03t0378275-00
Chr03	irgsp1_rep	exon	14948682	14948744	.	-	.	Parent=Os03t0378275-00
Chr03	irgsp1_rep	exon	14948303	14948424	.	-	.	Parent=Os03t0378275-00
Chr03	irgsp1_rep	exon	14947936	14948056	.	-	.	Parent=Os03t0378275-00
Chr03	irgsp1_rep	exon	14947533	14947719	.	-	.	Parent=Os03t0378275-00
Chr03	irgsp1_rep	exon	14946969	14947015	.	-	.	Parent=Os03t0378275-00
Chr03	irgsp1_rep	mRNA	14988410	14988685	.	-	.	ID=Os03t0378832-00;Name=Os03t0378832-00;Locus_id=Os03g0378832;Note=Hypothetical conserved gene.;Transcript_evidence=AB332061 (DDBJ%2C Best hit);ORF_evidence=B8AQI8 (UniProt);TENOR=Os03t0378832-00;KEGG=Os03t0378832-00
Chr03	irgsp1_rep	CDS	14988410	14988685	.	-	0	Parent=Os03t0378832-00
Chr03	irgsp1_rep	mRNA	14993014	14997377	.	+	.	ID=Os03t0379100-01;Name=Os03t0379100-01;Locus_id=Os03g0379100;Note=Protein of unknown function DUF248%2C methyltransferase putative family protein.;Transcript_evidence=AK119277 (DDBJ%2C Best hit);ORF_evidence=XP_002893375.1 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Protein of unknown function DUF248%2C methyltransferase putative (IPR004159);NIAS_FLcDNA=001-130-B10;Expression=AK119277;TENOR=Os03t0379100-01;KEGG=Os03t0379100-01
Chr03	irgsp1_rep	five_prime_UTR	14993014	14993133	.	+	.	Parent=Os03t0379100-01
Chr03	irgsp1_rep	five_prime_UTR	14994073	14994078	.	+	.	Parent=Os03t0379100-01
Chr03	irgsp1_rep	CDS	14994079	14994717	.	+	0	Parent=Os03t0379100-01
Chr03	irgsp1_rep	CDS	14994843	14995053	.	+	0	Parent=Os03t0379100-01
Chr03	irgsp1_rep	CDS	14995143	14995437	.	+	2	Parent=Os03t0379100-01
Chr03	irgsp1_rep	CDS	14995567	14995956	.	+	1	Parent=Os03t0379100-01
Chr03	irgsp1_rep	CDS	14996413	14996490	.	+	1	Parent=Os03t0379100-01
Chr03	irgsp1_rep	CDS	14996578	14996800	.	+	1	Parent=Os03t0379100-01
Chr03	irgsp1_rep	three_prime_UTR	14996801	14997377	.	+	.	Parent=Os03t0379100-01
Chr03	irgsp1_rep	mRNA	14994142	14996798	.	-	.	ID=Os03t0379200-00;Name=Os03t0379200-00;Locus_id=Os03g0379200;Note=Hypothetical protein.;Transcript_evidence=tplb0038j22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0379200-00
Chr03	irgsp1_rep	five_prime_UTR	14996517	14996798	.	-	.	Parent=Os03t0379200-00
Chr03	irgsp1_rep	five_prime_UTR	14995615	14995981	.	-	.	Parent=Os03t0379200-00
Chr03	irgsp1_rep	five_prime_UTR	14995154	14995461	.	-	.	Parent=Os03t0379200-00
Chr03	irgsp1_rep	five_prime_UTR	14994831	14995062	.	-	.	Parent=Os03t0379200-00
Chr03	irgsp1_rep	five_prime_UTR	14994655	14994706	.	-	.	Parent=Os03t0379200-00
Chr03	irgsp1_rep	CDS	14994280	14994654	.	-	0	Parent=Os03t0379200-00
Chr03	irgsp1_rep	three_prime_UTR	14994142	14994279	.	-	.	Parent=Os03t0379200-00
Chr03	irgsp1_rep	mRNA	15000100	15002138	.	+	.	ID=Os03t0379300-01;Name=Os03t0379300-01;Locus_id=Os03g0379300;RAP-DB Gene Symbol Synonym(s)=OsIRO3%2C OsbHLH063;RAP-DB Gene Name Synonym(s)=Iron-related transcription factor 3;Oryzabase Gene Symbol Synonym(s)=OsIRO3%2C IRO3%2C OsbHLH063%2C bHLH063%2C bHLH63;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 063;Note=Iron regulated bHLH transcription factor%2C Response to iron deficiency%2C Regulation of iron homeostasis;Transcript_evidence=AK068704;ORF_evidence=Q10KL8;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Helix-loop-helix DNA-binding domain superfamily (IPR036638),Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);NIAS_FLcDNA=J013159M16;Manual Curation=September 1%2C 2020;Literature_PMID=20699001;Oryzabase=11136;Expression=AK068704;TENOR=Os03t0379300-01;KEGG=Os03t0379300-01;Subcellular location=nucleus (GO:0005634)
Chr03	irgsp1_rep	five_prime_UTR	15000100	15000170	.	+	.	Parent=Os03t0379300-01
Chr03	irgsp1_rep	five_prime_UTR	15000290	15000324	.	+	.	Parent=Os03t0379300-01
Chr03	irgsp1_rep	CDS	15000325	15000395	.	+	0	Parent=Os03t0379300-01
Chr03	irgsp1_rep	CDS	15000826	15000944	.	+	1	Parent=Os03t0379300-01
Chr03	irgsp1_rep	CDS	15001146	15001273	.	+	2	Parent=Os03t0379300-01
Chr03	irgsp1_rep	CDS	15001429	15001869	.	+	0	Parent=Os03t0379300-01
Chr03	irgsp1_rep	three_prime_UTR	15001870	15002138	.	+	.	Parent=Os03t0379300-01
Chr03	irgsp1_rep	mRNA	15000100	15002140	.	+	.	ID=Os03t0379300-02;Name=Os03t0379300-02;Locus_id=Os03g0379300;CGSNL Gene Symbol=BHLH63;CGSNL Gene Name=BASIC HELIX-LOOP-HELIX PROTEIN 63;Oryzabase Gene Symbol Synonym(s)=OsIRO3%2C IRO3%2C OsbHLH063%2C bHLH063%2C bHLH63;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 063%2C iron-related transcription factor 3;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=AK061515 (DDBJ%2C Best hit);ORF_evidence=NP_001148562.1 (RefSeq);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=006-309-H04;Oryzabase=11136;Expression=AK061515;TENOR=Os03t0379300-02;KEGG=Os03t0379300-02
Chr03	irgsp1_rep	five_prime_UTR	15000100	15000170	.	+	.	Parent=Os03t0379300-02
Chr03	irgsp1_rep	five_prime_UTR	15000293	15000324	.	+	.	Parent=Os03t0379300-02
Chr03	irgsp1_rep	CDS	15000325	15000395	.	+	0	Parent=Os03t0379300-02
Chr03	irgsp1_rep	CDS	15000826	15000944	.	+	1	Parent=Os03t0379300-02
Chr03	irgsp1_rep	CDS	15001146	15001273	.	+	2	Parent=Os03t0379300-02
Chr03	irgsp1_rep	CDS	15001429	15001869	.	+	0	Parent=Os03t0379300-02
Chr03	irgsp1_rep	three_prime_UTR	15001870	15002140	.	+	.	Parent=Os03t0379300-02
Chr03	irgsp1_rep	mRNA	15000062	15002205	.	+	.	ID=Os03t0379300-03;Name=Os03t0379300-03;Locus_id=Os03g0379300;RAP-DB Gene Symbol Synonym(s)=OsIRO3;RAP-DB Gene Name Synonym(s)=Iron-related transcription factor 3;Oryzabase Gene Symbol Synonym(s)=OsIRO3%2C IRO3%2C OsbHLH063%2C bHLH063%2C bHLH63;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 063;Note=Iron-related transcription factor%2C Response to iron deficiency%2C Regulation of iron homeostasis;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Helix-loop-helix DNA-binding domain superfamily (IPR036638),Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);Manual Curation=September 1%2C 2020;Literature_PMID=32854449;Oryzabase=11136
Chr03	irgsp1_rep	five_prime_UTR	15000062	15000258	.	+	.	Parent=Os03t0379300-03
Chr03	irgsp1_rep	CDS	15000259	15000395	.	+	0	Parent=Os03t0379300-03
Chr03	irgsp1_rep	CDS	15000826	15000944	.	+	1	Parent=Os03t0379300-03
Chr03	irgsp1_rep	CDS	15001146	15001273	.	+	2	Parent=Os03t0379300-03
Chr03	irgsp1_rep	CDS	15001429	15001869	.	+	0	Parent=Os03t0379300-03
Chr03	irgsp1_rep	three_prime_UTR	15001870	15002205	.	+	.	Parent=Os03t0379300-03
Chr03	irgsp1_rep	mRNA	15002518	15004618	.	-	.	ID=Os03t0379400-00;Name=Os03t0379400-00;Locus_id=Os03g0379400;Note=Hypothetical conserved gene.;Transcript_evidence=AK374102 (DDBJ);ORF_evidence=NP_178391.1 (RefSeq);TENOR=Os03t0379400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	15004552	15004618	.	-	.	Parent=Os03t0379400-00
Chr03	irgsp1_rep	CDS	15004022	15004551	.	-	0	Parent=Os03t0379400-00
Chr03	irgsp1_rep	CDS	15002807	15002996	.	-	1	Parent=Os03t0379400-00
Chr03	irgsp1_rep	CDS	15002518	15002727	.	-	0	Parent=Os03t0379400-00
Chr03	irgsp1_rep	mRNA	15005895	15008257	.	+	.	ID=Os03t0379500-01;Name=Os03t0379500-01;Locus_id=Os03g0379500;Note=Similar to 40S ribosomal protein S9.;Transcript_evidence=AK064760 (DDBJ%2C Best hit);ORF_evidence=B6SZS2 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: small ribosomal subunit (GO:0015935),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735),Molecular Function: rRNA binding (GO:0019843);InterPro=Ribosomal protein S4/S9%2C N-terminal (IPR001912),RNA-binding S4 (IPR002942),Ribosomal protein S4/S9%2C eukaryotic/archaeal (IPR005710),Ribosomal protein S4/S9 (IPR022801);NIAS_FLcDNA=002-120-H01;Expression=AK064760;TENOR=Os03t0379500-01;KEGG=Os03t0379500-01
Chr03	irgsp1_rep	five_prime_UTR	15005895	15006016	.	+	.	Parent=Os03t0379500-01
Chr03	irgsp1_rep	five_prime_UTR	15006598	15006716	.	+	.	Parent=Os03t0379500-01
Chr03	irgsp1_rep	CDS	15006717	15006979	.	+	0	Parent=Os03t0379500-01
Chr03	irgsp1_rep	CDS	15007773	15007824	.	+	1	Parent=Os03t0379500-01
Chr03	irgsp1_rep	three_prime_UTR	15007825	15008257	.	+	.	Parent=Os03t0379500-01
Chr03	irgsp1_rep	mRNA	15006598	15007946	.	-	.	ID=Os03t0379650-00;Name=Os03t0379650-00;Locus_id=Os03g0379650;Note=Hypothetical gene.;Transcript_evidence=BT016876 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0379650-00
Chr03	irgsp1_rep	five_prime_UTR	15007774	15007946	.	-	.	Parent=Os03t0379650-00
Chr03	irgsp1_rep	five_prime_UTR	15006954	15006980	.	-	.	Parent=Os03t0379650-00
Chr03	irgsp1_rep	CDS	15006720	15006953	.	-	0	Parent=Os03t0379650-00
Chr03	irgsp1_rep	three_prime_UTR	15006598	15006719	.	-	.	Parent=Os03t0379650-00
Chr03	irgsp1_rep	mRNA	15011114	15011437	.	+	.	ID=Os03t0379700-00;Name=Os03t0379700-00;Locus_id=Os03g0379700;Note=Hypothetical conserved gene.;Transcript_evidence=EU968706 (DDBJ);ORF_evidence=Q8W3A0 (UniProt);TENOR=Os03t0379700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	15011114	15011161	.	+	.	Parent=Os03t0379700-00
Chr03	irgsp1_rep	CDS	15011162	15011437	.	+	0	Parent=Os03t0379700-00
Chr03	irgsp1_rep	mRNA	15016948	15023305	.	+	.	ID=Os03t0379801-00;Name=Os03t0379801-00;Locus_id=Os03g0379801;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10KL3 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os03t0379801-00
Chr03	irgsp1_rep	CDS	15016948	15017075	.	+	0	Parent=Os03t0379801-00
Chr03	irgsp1_rep	CDS	15021055	15023305	.	+	1	Parent=Os03t0379801-00
Chr03	irgsp1_rep	mRNA	15076021	15076626	.	+	.	ID=Os03t0380700-00;Name=Os03t0380700-00;Locus_id=Os03g0380700;Note=Similar to Zinc finger%2C C3HC4 type family protein.;Transcript_evidence=EU971524 (DDBJ);ORF_evidence=Q10KL0 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);TENOR=Os03t0380700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	15076021	15076059	.	+	.	Parent=Os03t0380700-00
Chr03	irgsp1_rep	CDS	15076060	15076626	.	+	0	Parent=Os03t0380700-00
Chr03	irgsp1_rep	mRNA	15100564	15102430	.	-	.	ID=Os03t0381000-01;Name=Os03t0381000-01;Locus_id=Os03g0381000;Oryzabase Gene Symbol Synonym(s)=RMP9;Oryzabase Gene Name Synonym(s)=rice microspore-preferred 9;Note=Similar to Aldose 1-epimerase-like protein.;Transcript_evidence=AK069332 (DDBJ%2C Best hit);ORF_evidence=NP_001149545.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: hexose metabolic process (GO:0019318),Molecular Function: catalytic activity (GO:0003824),Molecular Function: isomerase activity (GO:0016853),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Aldose 1-epimerase (IPR008183),Glycoside hydrolase-type carbohydrate-binding (IPR011013),Glycoside hydrolase-type carbohydrate-binding%2C subgroup (IPR014718),Aldose 1-epimerase%2C subgroup (IPR015443);NIAS_FLcDNA=J023010L17;Oryzabase=21550;Expression=AK069332;TENOR=Os03t0381000-01;KEGG=Os03t0381000-01 (EC:5.1.3.3)
Chr03	irgsp1_rep	five_prime_UTR	15102381	15102430	.	-	.	Parent=Os03t0381000-01
Chr03	irgsp1_rep	CDS	15102167	15102380	.	-	0	Parent=Os03t0381000-01
Chr03	irgsp1_rep	CDS	15101811	15101860	.	-	2	Parent=Os03t0381000-01
Chr03	irgsp1_rep	CDS	15100751	15101617	.	-	0	Parent=Os03t0381000-01
Chr03	irgsp1_rep	three_prime_UTR	15100564	15100750	.	-	.	Parent=Os03t0381000-01
Chr03	irgsp1_rep	mRNA	15106648	15112415	.	+	.	ID=Os03t0381100-00;Name=Os03t0381100-00;Locus_id=Os03g0381100;Note=Similar to Pseudouridylate synthase.;Transcript_evidence=BT053872 (DDBJ);ORF_evidence=B9F8Q5 (UniProt);GO=Biological Process: pseudouridine synthesis (GO:0001522),Biological Process: RNA modification (GO:0009451),Molecular Function: RNA binding (GO:0003723),Molecular Function: pseudouridine synthase activity (GO:0009982);InterPro=Pseudouridine synthase I%2C TruA (IPR001406),Pseudouridine synthase I%2C TruA%2C N-terminal (IPR020094),Pseudouridine synthase I%2C TruA%2C C-terminal (IPR020095),Pseudouridine synthase I%2C TruA%2C alpha/beta domain (IPR020097),Pseudouridine synthase%2C catalytic domain (IPR020103);TENOR=Os03t0381100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	15106648	15106717	.	+	.	Parent=Os03t0381100-00
Chr03	irgsp1_rep	five_prime_UTR	15106841	15106979	.	+	.	Parent=Os03t0381100-00
Chr03	irgsp1_rep	five_prime_UTR	15107702	15107888	.	+	.	Parent=Os03t0381100-00
Chr03	irgsp1_rep	CDS	15108078	15108157	.	+	0	Parent=Os03t0381100-00
Chr03	irgsp1_rep	CDS	15108595	15108640	.	+	1	Parent=Os03t0381100-00
Chr03	irgsp1_rep	CDS	15108738	15108848	.	+	0	Parent=Os03t0381100-00
Chr03	irgsp1_rep	CDS	15109506	15109572	.	+	0	Parent=Os03t0381100-00
Chr03	irgsp1_rep	CDS	15109822	15109912	.	+	2	Parent=Os03t0381100-00
Chr03	irgsp1_rep	CDS	15110153	15110213	.	+	1	Parent=Os03t0381100-00
Chr03	irgsp1_rep	CDS	15110297	15110427	.	+	0	Parent=Os03t0381100-00
Chr03	irgsp1_rep	CDS	15110525	15110642	.	+	1	Parent=Os03t0381100-00
Chr03	irgsp1_rep	CDS	15111335	15111458	.	+	0	Parent=Os03t0381100-00
Chr03	irgsp1_rep	CDS	15111799	15111900	.	+	2	Parent=Os03t0381100-00
Chr03	irgsp1_rep	CDS	15111999	15112067	.	+	2	Parent=Os03t0381100-00
Chr03	irgsp1_rep	CDS	15112359	15112414	.	+	2	Parent=Os03t0381100-00
Chr03	irgsp1_rep	three_prime_UTR	15112415	15112415	.	+	.	Parent=Os03t0381100-00
Chr03	irgsp1_rep	mRNA	15115159	15118337	.	+	.	ID=Os03t0381200-01;Name=Os03t0381200-01;Locus_id=Os03g0381200;Note=Similar to Capping protein beta 3 subunit (Fragment).;Transcript_evidence=AK061302 (DDBJ%2C Best hit);ORF_evidence=B4FEU0 (UniProt);GO=Biological Process: actin cytoskeleton organization (GO:0030036),Cellular Component: cytoplasm (GO:0005737),Cellular Component: F-actin capping protein complex (GO:0008290),Molecular Function: actin binding (GO:0003779);InterPro=WASH complex%2C F-actin capping protein%2C beta subunit (IPR001698),F-actin capping protein%2C beta subunit%2C conserved site (IPR019771);NIAS_FLcDNA=006-301-F06;Expression=AK061302;TENOR=Os03t0381200-01;KEGG=Os03t0381200-01
Chr03	irgsp1_rep	five_prime_UTR	15115159	15115216	.	+	.	Parent=Os03t0381200-01
Chr03	irgsp1_rep	CDS	15115217	15115345	.	+	0	Parent=Os03t0381200-01
Chr03	irgsp1_rep	CDS	15115730	15115800	.	+	0	Parent=Os03t0381200-01
Chr03	irgsp1_rep	CDS	15116173	15116286	.	+	1	Parent=Os03t0381200-01
Chr03	irgsp1_rep	CDS	15116442	15116524	.	+	1	Parent=Os03t0381200-01
Chr03	irgsp1_rep	CDS	15116611	15116672	.	+	2	Parent=Os03t0381200-01
Chr03	irgsp1_rep	CDS	15116777	15116896	.	+	0	Parent=Os03t0381200-01
Chr03	irgsp1_rep	CDS	15117680	15117775	.	+	0	Parent=Os03t0381200-01
Chr03	irgsp1_rep	CDS	15117895	15117978	.	+	0	Parent=Os03t0381200-01
Chr03	irgsp1_rep	three_prime_UTR	15117979	15118337	.	+	.	Parent=Os03t0381200-01
Chr03	irgsp1_rep	mRNA	15115202	15118337	.	+	.	ID=Os03t0381200-02;Name=Os03t0381200-02;Locus_id=Os03g0381200;Note=Similar to Capping protein beta 3 subunit (Fragment).;Transcript_evidence=AK104161 (DDBJ%2C Best hit);ORF_evidence=B4FEU0 (UniProt);GO=Biological Process: actin cytoskeleton organization (GO:0030036),Cellular Component: cytoplasm (GO:0005737),Cellular Component: F-actin capping protein complex (GO:0008290),Molecular Function: actin binding (GO:0003779);InterPro=WASH complex%2C F-actin capping protein%2C beta subunit (IPR001698),F-actin capping protein%2C beta subunit%2C conserved site (IPR019771);NIAS_FLcDNA=006-211-G05;Expression=AK104161;TENOR=Os03t0381200-02;KEGG=Os03t0381200-02
Chr03	irgsp1_rep	five_prime_UTR	15115202	15115216	.	+	.	Parent=Os03t0381200-02
Chr03	irgsp1_rep	CDS	15115217	15115345	.	+	0	Parent=Os03t0381200-02
Chr03	irgsp1_rep	CDS	15115730	15115800	.	+	0	Parent=Os03t0381200-02
Chr03	irgsp1_rep	CDS	15116173	15116286	.	+	1	Parent=Os03t0381200-02
Chr03	irgsp1_rep	CDS	15116442	15116524	.	+	1	Parent=Os03t0381200-02
Chr03	irgsp1_rep	CDS	15116611	15116672	.	+	2	Parent=Os03t0381200-02
Chr03	irgsp1_rep	CDS	15116777	15116896	.	+	0	Parent=Os03t0381200-02
Chr03	irgsp1_rep	CDS	15117680	15117775	.	+	0	Parent=Os03t0381200-02
Chr03	irgsp1_rep	CDS	15117895	15117978	.	+	0	Parent=Os03t0381200-02
Chr03	irgsp1_rep	three_prime_UTR	15117979	15118337	.	+	.	Parent=Os03t0381200-02
Chr03	irgsp1_rep	mRNA	15118428	15121526	.	-	.	ID=Os03t0381300-01;Name=Os03t0381300-01;Locus_id=Os03g0381300;Note=CS domain domain containing protein.;Transcript_evidence=AK068105 (DDBJ%2C Best hit);ORF_evidence=Q3I0N3 (UniProt);InterPro=CS-like domain (IPR007052),HSP20-like chaperone (IPR008978),CS domain (IPR017447);NIAS_FLcDNA=J013131N05;Expression=AK068105;TENOR=Os03t0381300-01;KEGG=Os03t0381300-01
Chr03	irgsp1_rep	five_prime_UTR	15121269	15121526	.	-	.	Parent=Os03t0381300-01
Chr03	irgsp1_rep	CDS	15121264	15121268	.	-	0	Parent=Os03t0381300-01
Chr03	irgsp1_rep	CDS	15120521	15120707	.	-	1	Parent=Os03t0381300-01
Chr03	irgsp1_rep	CDS	15120279	15120438	.	-	0	Parent=Os03t0381300-01
Chr03	irgsp1_rep	CDS	15120158	15120186	.	-	2	Parent=Os03t0381300-01
Chr03	irgsp1_rep	CDS	15120004	15120079	.	-	0	Parent=Os03t0381300-01
Chr03	irgsp1_rep	CDS	15118786	15118850	.	-	2	Parent=Os03t0381300-01
Chr03	irgsp1_rep	three_prime_UTR	15118428	15118785	.	-	.	Parent=Os03t0381300-01
Chr03	irgsp1_rep	mRNA	15127253	15128249	.	-	.	ID=Os03t0381500-01;Name=Os03t0381500-01;Locus_id=Os03g0381500;Oryzabase Gene Symbol Synonym(s)=OsEnS-46;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 46;Note=Conserved hypothetical protein.;Transcript_evidence=AK108125 (DDBJ%2C Best hit);ORF_evidence=A2XHE6 (UniProt);NIAS_FLcDNA=002-139-D04;Oryzabase=18374;Expression=AK108125;TENOR=Os03t0381500-01;KEGG=Os03t0381500-01
Chr03	irgsp1_rep	five_prime_UTR	15128186	15128249	.	-	.	Parent=Os03t0381500-01
Chr03	irgsp1_rep	CDS	15127785	15128185	.	-	0	Parent=Os03t0381500-01
Chr03	irgsp1_rep	CDS	15127490	15127688	.	-	1	Parent=Os03t0381500-01
Chr03	irgsp1_rep	three_prime_UTR	15127253	15127489	.	-	.	Parent=Os03t0381500-01
Chr03	irgsp1_rep	mRNA	15149948	15151948	.	+	.	ID=Os03t0382100-01;Name=Os03t0382100-01;Locus_id=Os03g0382100;Note=Thiolase-like%2C subgroup domain containing protein.;Transcript_evidence=AK241725 (DDBJ%2C Best hit);ORF_evidence=A3AIK1 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: metabolic process (GO:0008152),Biological Process: lipid biosynthetic process (GO:0008610),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Very-long-chain 3-ketoacyl-CoA synthase (IPR012392),FAE1/Type III polyketide synthase-like protein (IPR013601),3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (IPR013747),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);NIAS_FLcDNA=J065198N05;TENOR=Os03t0382100-01;KEGG=Os03t0382100-01
Chr03	irgsp1_rep	five_prime_UTR	15149948	15150006	.	+	.	Parent=Os03t0382100-01
Chr03	irgsp1_rep	CDS	15150007	15151410	.	+	0	Parent=Os03t0382100-01
Chr03	irgsp1_rep	three_prime_UTR	15151411	15151948	.	+	.	Parent=Os03t0382100-01
Chr03	irgsp1_rep	mRNA	15160887	15161956	.	+	.	ID=Os03t0382350-01;Name=Os03t0382350-01;Locus_id=Os03g0382350;Note=Hypothetical conserved gene.;Transcript_evidence=AK240909 (DDBJ%2C Best hit);ORF_evidence=B9FWB3 (UniProt);NIAS_FLcDNA=J065037B13;TENOR=Os03t0382350-01;KEGG=Os03t0382350-01
Chr03	irgsp1_rep	five_prime_UTR	15160887	15161655	.	+	.	Parent=Os03t0382350-01
Chr03	irgsp1_rep	CDS	15161656	15161853	.	+	0	Parent=Os03t0382350-01
Chr03	irgsp1_rep	three_prime_UTR	15161854	15161956	.	+	.	Parent=Os03t0382350-01
Chr03	irgsp1_rep	mRNA	15189113	15195856	.	+	.	ID=Os03t0383100-01;Name=Os03t0383100-01;Locus_id=Os03g0383100;Note=Hypothetical protein.;Transcript_evidence=AK107106 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-122-A11;TENOR=Os03t0383100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	15189113	15189321	.	+	.	Parent=Os03t0383100-01
Chr03	irgsp1_rep	five_prime_UTR	15189752	15189824	.	+	.	Parent=Os03t0383100-01
Chr03	irgsp1_rep	five_prime_UTR	15194351	15194443	.	+	.	Parent=Os03t0383100-01
Chr03	irgsp1_rep	CDS	15194444	15194968	.	+	0	Parent=Os03t0383100-01
Chr03	irgsp1_rep	three_prime_UTR	15194969	15195856	.	+	.	Parent=Os03t0383100-01
Chr03	irgsp1_rep	mRNA	15201529	15201576	.	+	.	ID=Os03t0383350-00;Name=Os03t0383350-00;Locus_id=Os03g0383350;Note=Non-protein coding transcript.;Transcript_evidence=X02683 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0383350-00
Chr03	irgsp1_rep	exon	15201529	15201576	.	+	.	Parent=Os03t0383350-00
Chr03	irgsp1_rep	mRNA	15208874	15210538	.	+	.	ID=Os03t0383600-01;Name=Os03t0383600-01;Locus_id=Os03g0383600;Note=Thiolase-like%2C subgroup domain containing protein.;Transcript_evidence=AK071506 (DDBJ%2C Best hit);ORF_evidence=A3AIK3 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: metabolic process (GO:0008152),Biological Process: lipid biosynthetic process (GO:0008610),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Very-long-chain 3-ketoacyl-CoA synthase (IPR012392),FAE1/Type III polyketide synthase-like protein (IPR013601),3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (IPR013747),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);NIAS_FLcDNA=J023093M02;Expression=AK071506;TENOR=Os03t0383600-01;KEGG=Os03t0383600-01
Chr03	irgsp1_rep	five_prime_UTR	15208874	15208892	.	+	.	Parent=Os03t0383600-01
Chr03	irgsp1_rep	CDS	15208893	15210311	.	+	0	Parent=Os03t0383600-01
Chr03	irgsp1_rep	three_prime_UTR	15210312	15210538	.	+	.	Parent=Os03t0383600-01
Chr03	irgsp1_rep	mRNA	15218023	15219070	.	-	.	ID=Os03t0383800-01;Name=Os03t0383800-01;Locus_id=Os03g0383800;Note=Similar to SAP domain containing protein%2C expressed.;Transcript_evidence=AK062998 (DDBJ%2C Best hit);ORF_evidence=Q10KI0 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=DNA-binding SAP (IPR003034);NIAS_FLcDNA=001-109-G12;TENOR=Os03t0383800-01
Chr03	irgsp1_rep	five_prime_UTR	15218740	15219070	.	-	.	Parent=Os03t0383800-01
Chr03	irgsp1_rep	five_prime_UTR	15218563	15218636	.	-	.	Parent=Os03t0383800-01
Chr03	irgsp1_rep	five_prime_UTR	15218168	15218172	.	-	.	Parent=Os03t0383800-01
Chr03	irgsp1_rep	CDS	15218023	15218167	.	-	0	Parent=Os03t0383800-01
Chr03	irgsp1_rep	mRNA	15214197	15219068	.	-	.	ID=Os03t0383800-02;Name=Os03t0383800-02;Locus_id=Os03g0383800;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK065904 (DDBJ%2C Best hit);ORF_evidence=Q10KI0 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=DNA-binding SAP (IPR003034);NIAS_FLcDNA=J013046O14;Expression=AK065904;TENOR=Os03t0383800-02;KEGG=Os03t0383800-02
Chr03	irgsp1_rep	five_prime_UTR	15218740	15219068	.	-	.	Parent=Os03t0383800-02
Chr03	irgsp1_rep	five_prime_UTR	15218563	15218636	.	-	.	Parent=Os03t0383800-02
Chr03	irgsp1_rep	five_prime_UTR	15218168	15218172	.	-	.	Parent=Os03t0383800-02
Chr03	irgsp1_rep	CDS	15216835	15218167	.	-	0	Parent=Os03t0383800-02
Chr03	irgsp1_rep	CDS	15215837	15216034	.	-	2	Parent=Os03t0383800-02
Chr03	irgsp1_rep	CDS	15215595	15215746	.	-	2	Parent=Os03t0383800-02
Chr03	irgsp1_rep	CDS	15214665	15215129	.	-	0	Parent=Os03t0383800-02
Chr03	irgsp1_rep	three_prime_UTR	15214197	15214664	.	-	.	Parent=Os03t0383800-02
Chr03	irgsp1_rep	mRNA	15214303	15216887	.	-	.	ID=Os03t0383800-03;Name=Os03t0383800-03;Locus_id=Os03g0383800;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK061915 (DDBJ%2C Best hit);ORF_evidence=Q10KI0 (UniProt);NIAS_FLcDNA=001-042-A12;Expression=AK061915;TENOR=Os03t0383800-03;KEGG=Os03t0383800-03
Chr03	irgsp1_rep	five_prime_UTR	15216887	15216887	.	-	.	Parent=Os03t0383800-03
Chr03	irgsp1_rep	CDS	15216835	15216886	.	-	0	Parent=Os03t0383800-03
Chr03	irgsp1_rep	CDS	15215837	15216034	.	-	2	Parent=Os03t0383800-03
Chr03	irgsp1_rep	CDS	15215595	15215746	.	-	2	Parent=Os03t0383800-03
Chr03	irgsp1_rep	CDS	15214665	15215129	.	-	0	Parent=Os03t0383800-03
Chr03	irgsp1_rep	three_prime_UTR	15214303	15214664	.	-	.	Parent=Os03t0383800-03
Chr03	irgsp1_rep	mRNA	15224279	15225606	.	+	.	ID=Os03t0383900-01;Name=Os03t0383900-01;Locus_id=Os03g0383900;CGSNL Gene Symbol=HMP21;CGSNL Gene Name=HEAVY METAL-ASSOCIATED PROTEIN 21;Oryzabase Gene Symbol Synonym(s)=OsHMP21;Oryzabase Gene Name Synonym(s)=Heavy metal-associated protein 21;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK069713 (DDBJ%2C Best hit);ORF_evidence=C3SA91 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);NIAS_FLcDNA=J023033I19;Oryzabase=23542;Expression=AK069713;TENOR=Os03t0383900-01;KEGG=Os03t0383900-01
Chr03	irgsp1_rep	five_prime_UTR	15224279	15224371	.	+	.	Parent=Os03t0383900-01
Chr03	irgsp1_rep	five_prime_UTR	15224607	15224662	.	+	.	Parent=Os03t0383900-01
Chr03	irgsp1_rep	CDS	15224663	15224828	.	+	0	Parent=Os03t0383900-01
Chr03	irgsp1_rep	CDS	15224974	15225281	.	+	2	Parent=Os03t0383900-01
Chr03	irgsp1_rep	three_prime_UTR	15225282	15225606	.	+	.	Parent=Os03t0383900-01
Chr03	irgsp1_rep	mRNA	15300737	15301156	.	+	.	ID=Os03t0385100-00;Name=Os03t0385100-00;Locus_id=Os03g0385100;Oryzabase Gene Symbol Synonym(s)=LTPG5%2C OsLTPG5%2C OsLTPg5%2C OsHyPRP10%2C HyPRP10;Oryzabase Gene Name Synonym(s)=GPI-anchored non-specific lipid transfer protein 5%2C type G nsLTP 5%2C type G non-specific lipid transfer protein 5%2C Hybrid Proline-Rich Protein 10;Note=Similar to Protease inhibitor/seed storage/LTP family protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10KG7 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);Oryzabase=13492;TENOR=Os03t0385100-00
Chr03	irgsp1_rep	CDS	15300737	15301156	.	+	0	Parent=Os03t0385100-00
Chr03	irgsp1_rep	mRNA	15295400	15297903	.	-	.	ID=Os03t0385301-01;Name=Os03t0385301-01;Locus_id=Os03g0385301;Note=Conserved hypothetical protein.;Transcript_evidence=AK241085 (DDBJ%2C Best hit);ORF_evidence=B8AQK3 (UniProt);NIAS_FLcDNA=J065073P03;TENOR=Os03t0385301-01;KEGG=Os03t0385301-01
Chr03	irgsp1_rep	five_prime_UTR	15297848	15297903	.	-	.	Parent=Os03t0385301-01
Chr03	irgsp1_rep	CDS	15297737	15297847	.	-	0	Parent=Os03t0385301-01
Chr03	irgsp1_rep	CDS	15295564	15295698	.	-	0	Parent=Os03t0385301-01
Chr03	irgsp1_rep	three_prime_UTR	15295400	15295563	.	-	.	Parent=Os03t0385301-01
Chr03	irgsp1_rep	mRNA	15307624	15309776	.	+	.	ID=Os03t0385400-01;Name=Os03t0385400-01;Locus_id=Os03g0385400;Oryzabase Gene Symbol Synonym(s)=OsLLA1%2C OsLTPG6%2C OsLTPg6%2C OsLTPL1%2C LLA1%2C LTPG6%2C LTPg6%2C LTPL1;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein-like AGP 1%2C non-specific lipid transfer protein-like arabinogalactan protein 1%2C GPI-anchored non-specific lipid transfer protein 6%2C type G nsLTP 6%2C type G non-specific lipid transfer protein 6%2C non-specific lipid transfer protein-like protein 1;Note=Bifunctional inhibitor/plant lipid transfer protein/seed storage domain containing protein.;Transcript_evidence=AK068223 (DDBJ%2C Best hit),AK070241 (DDBJ%2C Best hit);ORF_evidence=Q6ASY2 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=J013140G04,J023044C09;Oryzabase=11328;TENOR=Os03t0385400-01
Chr03	irgsp1_rep	five_prime_UTR	15307624	15307695	.	+	.	Parent=Os03t0385400-01
Chr03	irgsp1_rep	CDS	15307696	15308059	.	+	0	Parent=Os03t0385400-01
Chr03	irgsp1_rep	CDS	15309349	15309521	.	+	2	Parent=Os03t0385400-01
Chr03	irgsp1_rep	three_prime_UTR	15309522	15309776	.	+	.	Parent=Os03t0385400-01
Chr03	irgsp1_rep	mRNA	15321862	15323947	.	-	.	ID=Os03t0385900-01;Name=Os03t0385900-01;Locus_id=Os03g0385900;CGSNL Gene Symbol=RPS11;CGSNL Gene Name=RIBOSOMAL PROTEIN S11;Oryzabase Gene Symbol Synonym(s)=rps11%2C s11-1;Oryzabase Gene Name Synonym(s)=ribosomal protein S11%2C mitochondrial ribosomal protein S11;Note=Mitochondrial ribosomal protein S11 (Nuclear encoded).;Transcript_evidence=AK072987 (DDBJ%2C Best hit);ORF_evidence=P93408 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S11 (IPR001971);NIAS_FLcDNA=J023150F21;Oryzabase=13769;Expression=AK072987;TENOR=Os03t0385900-01;KEGG=Os03t0385900-01
Chr03	irgsp1_rep	five_prime_UTR	15323946	15323947	.	-	.	Parent=Os03t0385900-01
Chr03	irgsp1_rep	CDS	15323580	15323945	.	-	0	Parent=Os03t0385900-01
Chr03	irgsp1_rep	CDS	15323028	15323197	.	-	0	Parent=Os03t0385900-01
Chr03	irgsp1_rep	CDS	15322472	15322934	.	-	1	Parent=Os03t0385900-01
Chr03	irgsp1_rep	three_prime_UTR	15321862	15322471	.	-	.	Parent=Os03t0385900-01
Chr03	irgsp1_rep	mRNA	15322178	15323921	.	-	.	ID=Os03t0385900-03;Name=Os03t0385900-03;Locus_id=Os03g0385900;CGSNL Gene Symbol=RPS11;CGSNL Gene Name=RIBOSOMAL PROTEIN S11;Oryzabase Gene Symbol Synonym(s)=rps11%2C s11-1;Oryzabase Gene Name Synonym(s)=ribosomal protein S11%2C mitochondrial ribosomal protein S11;Note=Similar to Mitochondrial ribosomal protein S11.;Transcript_evidence=AK073780 (DDBJ%2C Best hit),AK066831 (DDBJ%2C Best hit);ORF_evidence=P93408 (UniProt);NIAS_FLcDNA=J033068M08,J013075L03;Oryzabase=13769;TENOR=Os03t0385900-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	15323712	15323921	.	-	.	Parent=Os03t0385900-03
Chr03	irgsp1_rep	CDS	15323580	15323711	.	-	0	Parent=Os03t0385900-03
Chr03	irgsp1_rep	CDS	15323028	15323197	.	-	0	Parent=Os03t0385900-03
Chr03	irgsp1_rep	CDS	15322472	15322934	.	-	1	Parent=Os03t0385900-03
Chr03	irgsp1_rep	three_prime_UTR	15322178	15322471	.	-	.	Parent=Os03t0385900-03
Chr03	irgsp1_rep	mRNA	15329520	15334903	.	+	.	ID=Os03t0386000-01;Name=Os03t0386000-01;Locus_id=Os03g0386000;CGSNL Gene Symbol=SRWD5;CGSNL Gene Name=SALT RESPONSIVE WD40 PROTEIN 5;Oryzabase Gene Symbol Synonym(s)=SRWD5%2C OsWD40-73;Oryzabase Gene Name Synonym(s)=salt responsive WD40 protein 5;Note=Similar to Salt-responsive WD40 protein 5.;Transcript_evidence=AK072984 (Genbank);ORF_evidence=B3GQE8 (UniProt);NIAS_FLcDNA=J023149A15;Oryzabase=8214;TENOR=Os03t0386000-01
Chr03	irgsp1_rep	five_prime_UTR	15329520	15329712	.	+	.	Parent=Os03t0386000-01
Chr03	irgsp1_rep	five_prime_UTR	15329932	15330088	.	+	.	Parent=Os03t0386000-01
Chr03	irgsp1_rep	five_prime_UTR	15331331	15331454	.	+	.	Parent=Os03t0386000-01
Chr03	irgsp1_rep	five_prime_UTR	15331551	15332910	.	+	.	Parent=Os03t0386000-01
Chr03	irgsp1_rep	CDS	15332911	15333075	.	+	0	Parent=Os03t0386000-01
Chr03	irgsp1_rep	CDS	15333165	15333269	.	+	0	Parent=Os03t0386000-01
Chr03	irgsp1_rep	CDS	15333361	15333452	.	+	0	Parent=Os03t0386000-01
Chr03	irgsp1_rep	CDS	15333541	15333646	.	+	1	Parent=Os03t0386000-01
Chr03	irgsp1_rep	CDS	15333745	15333831	.	+	0	Parent=Os03t0386000-01
Chr03	irgsp1_rep	CDS	15333935	15334366	.	+	0	Parent=Os03t0386000-01
Chr03	irgsp1_rep	three_prime_UTR	15334367	15334903	.	+	.	Parent=Os03t0386000-01
Chr03	irgsp1_rep	mRNA	15329963	15334367	.	+	.	ID=Os03t0386000-02;Name=Os03t0386000-02;Locus_id=Os03g0386000;RAP-DB Gene Symbol Synonym(s)=SRWD5%2C SRWD5%2C OsWD40-73;RAP-DB Gene Name Synonym(s)=SALT RESPONSIVE WD40 PROTEIN 5%2C Salt responsive WD40 protein5%2C salt responsive WD40 protein 5;CGSNL Gene Symbol=SRWD5;CGSNL Gene Name=SALT RESPONSIVE WD40 PROTEIN 5;Oryzabase Gene Symbol Synonym(s)=SRWD5%2C OsWD40-73;Oryzabase Gene Name Synonym(s)=salt responsive WD40 protein 5;Note=WD40 subfamily protein%2C Salt stress;Transcript_evidence=EU718734 (Genbank);ORF_evidence=B3GQE8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775);Manual Curation=June 9%2C 2009;Literature_PMID=18755256;Oryzabase=8214
Chr03	irgsp1_rep	five_prime_UTR	15329963	15330047	.	+	.	Parent=Os03t0386000-02
Chr03	irgsp1_rep	CDS	15330048	15330088	.	+	0	Parent=Os03t0386000-02
Chr03	irgsp1_rep	CDS	15331331	15331454	.	+	1	Parent=Os03t0386000-02
Chr03	irgsp1_rep	CDS	15331551	15331637	.	+	0	Parent=Os03t0386000-02
Chr03	irgsp1_rep	CDS	15332941	15333075	.	+	0	Parent=Os03t0386000-02
Chr03	irgsp1_rep	CDS	15333165	15333269	.	+	0	Parent=Os03t0386000-02
Chr03	irgsp1_rep	CDS	15333361	15333452	.	+	0	Parent=Os03t0386000-02
Chr03	irgsp1_rep	CDS	15333541	15333646	.	+	1	Parent=Os03t0386000-02
Chr03	irgsp1_rep	CDS	15333745	15333831	.	+	0	Parent=Os03t0386000-02
Chr03	irgsp1_rep	CDS	15333935	15334366	.	+	0	Parent=Os03t0386000-02
Chr03	irgsp1_rep	three_prime_UTR	15334367	15334367	.	+	.	Parent=Os03t0386000-02
Chr03	irgsp1_rep	mRNA	15381800	15384276	.	+	.	ID=Os03t0386500-01;Name=Os03t0386500-01;Locus_id=Os03g0386500;CGSNL Gene Symbol=TPP9;CGSNL Gene Name=TREHALOSE-6-PHOSPHATE PHOSHPHATASE 9;Oryzabase Gene Symbol Synonym(s)=OsTPP9;Note=Similar to Trehalose-6-phosphate phosphatase.;Transcript_evidence=AK106316 (DDBJ%2C Best hit);ORF_evidence=Q10KF5 (UniProt);GO=Biological Process: trehalose biosynthetic process (GO:0005992),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Trehalose-phosphatase (IPR003337),HAD-superfamily hydrolase%2C subfamily IIB (IPR006379),HAD-like domain (IPR023214);NIAS_FLcDNA=002-101-E01;Oryzabase=9984;Expression=AK106316;TENOR=Os03t0386500-01;KEGG=Os03t0386500-01
Chr03	irgsp1_rep	five_prime_UTR	15381800	15381934	.	+	.	Parent=Os03t0386500-01
Chr03	irgsp1_rep	CDS	15381935	15381962	.	+	0	Parent=Os03t0386500-01
Chr03	irgsp1_rep	CDS	15382155	15382198	.	+	2	Parent=Os03t0386500-01
Chr03	irgsp1_rep	CDS	15382325	15382465	.	+	0	Parent=Os03t0386500-01
Chr03	irgsp1_rep	CDS	15382659	15382730	.	+	0	Parent=Os03t0386500-01
Chr03	irgsp1_rep	CDS	15383056	15383145	.	+	0	Parent=Os03t0386500-01
Chr03	irgsp1_rep	CDS	15383276	15383833	.	+	0	Parent=Os03t0386500-01
Chr03	irgsp1_rep	three_prime_UTR	15383834	15384276	.	+	.	Parent=Os03t0386500-01
Chr03	irgsp1_rep	mRNA	15389893	15404527	.	-	.	ID=Os03t0386600-01;Name=Os03t0386600-01;Locus_id=Os03g0386600;Note=Hypothetical protein.;Transcript_evidence=AK069441 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023022N16;TENOR=Os03t0386600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	15404526	15404527	.	-	.	Parent=Os03t0386600-01
Chr03	irgsp1_rep	CDS	15404280	15404525	.	-	0	Parent=Os03t0386600-01
Chr03	irgsp1_rep	three_prime_UTR	15404157	15404279	.	-	.	Parent=Os03t0386600-01
Chr03	irgsp1_rep	three_prime_UTR	15398623	15398793	.	-	.	Parent=Os03t0386600-01
Chr03	irgsp1_rep	three_prime_UTR	15396718	15396968	.	-	.	Parent=Os03t0386600-01
Chr03	irgsp1_rep	three_prime_UTR	15396227	15396481	.	-	.	Parent=Os03t0386600-01
Chr03	irgsp1_rep	three_prime_UTR	15396045	15396134	.	-	.	Parent=Os03t0386600-01
Chr03	irgsp1_rep	three_prime_UTR	15391963	15394550	.	-	.	Parent=Os03t0386600-01
Chr03	irgsp1_rep	three_prime_UTR	15389893	15390254	.	-	.	Parent=Os03t0386600-01
Chr03	irgsp1_rep	mRNA	15402719	15404430	.	-	.	ID=Os03t0386600-02;Name=Os03t0386600-02;Locus_id=Os03g0386600;Note=Hypothetical conserved gene.;Transcript_evidence=AK107994 (DDBJ%2C Best hit);ORF_evidence=Q6AVE4 (UniProt);NIAS_FLcDNA=002-135-F11;Expression=AK107994;TENOR=Os03t0386600-02;KEGG=Os03t0386600-02
Chr03	irgsp1_rep	five_prime_UTR	15404321	15404430	.	-	.	Parent=Os03t0386600-02
Chr03	irgsp1_rep	CDS	15404157	15404320	.	-	0	Parent=Os03t0386600-02
Chr03	irgsp1_rep	CDS	15402951	15403107	.	-	1	Parent=Os03t0386600-02
Chr03	irgsp1_rep	three_prime_UTR	15402719	15402950	.	-	.	Parent=Os03t0386600-02
Chr03	irgsp1_rep	mRNA	15395285	15397808	.	+	.	ID=Os03t0386700-00;Name=Os03t0386700-00;Locus_id=Os03g0386700;CGSNL Gene Symbol=SCP12;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 12;Oryzabase Gene Symbol Synonym(s)=OsSCP12;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 12;Note=Similar to serine carboxypeptidase.;Transcript_evidence=EU957248 (DDBJ);ORF_evidence=NP_001148004.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);Oryzabase=19195;TENOR=Os03t0386700-00;KEGG=Os03t0386700-00 (EC:3.4.16.6)
Chr03	irgsp1_rep	CDS	15395285	15395687	.	+	0	Parent=Os03t0386700-00
Chr03	irgsp1_rep	CDS	15396058	15396165	.	+	2	Parent=Os03t0386700-00
Chr03	irgsp1_rep	CDS	15396266	15396540	.	+	2	Parent=Os03t0386700-00
Chr03	irgsp1_rep	CDS	15396628	15396876	.	+	0	Parent=Os03t0386700-00
Chr03	irgsp1_rep	CDS	15396952	15397070	.	+	0	Parent=Os03t0386700-00
Chr03	irgsp1_rep	CDS	15397156	15397254	.	+	1	Parent=Os03t0386700-00
Chr03	irgsp1_rep	CDS	15397350	15397458	.	+	1	Parent=Os03t0386700-00
Chr03	irgsp1_rep	CDS	15397563	15397703	.	+	0	Parent=Os03t0386700-00
Chr03	irgsp1_rep	three_prime_UTR	15397704	15397808	.	+	.	Parent=Os03t0386700-00
Chr03	irgsp1_rep	mRNA	15400468	15403844	.	+	.	ID=Os03t0386800-01;Name=Os03t0386800-01;Locus_id=Os03g0386800;CGSNL Gene Symbol=SCP13;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 13;Oryzabase Gene Symbol Synonym(s)=OsSCP13;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 13;Note=Peptidase S10%2C serine carboxypeptidase family protein.;Transcript_evidence=AK066671 (DDBJ%2C Best hit);ORF_evidence=NP_001151412.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=J013072A16;Oryzabase=19196;Expression=AK066671;TENOR=Os03t0386800-01;KEGG=Os03t0386800-01
Chr03	irgsp1_rep	five_prime_UTR	15400468	15400468	.	+	.	Parent=Os03t0386800-01
Chr03	irgsp1_rep	CDS	15400469	15400751	.	+	0	Parent=Os03t0386800-01
Chr03	irgsp1_rep	CDS	15401232	15401339	.	+	2	Parent=Os03t0386800-01
Chr03	irgsp1_rep	CDS	15401428	15401702	.	+	2	Parent=Os03t0386800-01
Chr03	irgsp1_rep	CDS	15401786	15402040	.	+	0	Parent=Os03t0386800-01
Chr03	irgsp1_rep	CDS	15402135	15402253	.	+	0	Parent=Os03t0386800-01
Chr03	irgsp1_rep	CDS	15402807	15402902	.	+	1	Parent=Os03t0386800-01
Chr03	irgsp1_rep	CDS	15402987	15403092	.	+	1	Parent=Os03t0386800-01
Chr03	irgsp1_rep	CDS	15403321	15403461	.	+	0	Parent=Os03t0386800-01
Chr03	irgsp1_rep	three_prime_UTR	15403462	15403844	.	+	.	Parent=Os03t0386800-01
Chr03	irgsp1_rep	mRNA	15417019	15419577	.	+	.	ID=Os03t0387000-01;Name=Os03t0387000-01;Locus_id=Os03g0387000;Oryzabase Gene Name Synonym(s)=AQUARIUS%2C intron-binding protein AQUARIUS;Note=Similar to Aquarius.;Transcript_evidence=AK110991 (DDBJ%2C Best hit);ORF_evidence=E5GCK6 (UniProt);NIAS_FLcDNA=002-174-D10;Oryzabase=19889;Expression=AK110991;TENOR=Os03t0387000-01;KEGG=Os03t0387000-01
Chr03	irgsp1_rep	five_prime_UTR	15417019	15417019	.	+	.	Parent=Os03t0387000-01
Chr03	irgsp1_rep	CDS	15417020	15418075	.	+	0	Parent=Os03t0387000-01
Chr03	irgsp1_rep	CDS	15418168	15418518	.	+	0	Parent=Os03t0387000-01
Chr03	irgsp1_rep	CDS	15418625	15419020	.	+	0	Parent=Os03t0387000-01
Chr03	irgsp1_rep	three_prime_UTR	15419021	15419577	.	+	.	Parent=Os03t0387000-01
Chr03	irgsp1_rep	mRNA	15420151	15424562	.	+	.	ID=Os03t0387100-01;Name=Os03t0387100-01;Locus_id=Os03g0387100;RAP-DB Gene Symbol Synonym(s)=TT1%2C OsPAB1%2C PAB1%2C OsTT1;RAP-DB Gene Name Synonym(s)=THERMO-TOLERANCE 1%2C 20S proteasome alpha2 subunit%2C Thermo-tolerance 1;CGSNL Gene Symbol=TT1;CGSNL Gene Name=THERMO-TOLERANCE 1;Oryzabase Gene Symbol Synonym(s)=OsPAB1%2C PAB1%2C OsTT1;Oryzabase Gene Name Synonym(s)=20S proteasome alpha2 subunit%2C Thermo-tolerance 1;Note=Proteasome alpha 2 subunit%2C Thermotolerance;Transcript_evidence=AB026559,AK058567,AK101195;ORF_evidence=Q10KF0;GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603),Molecular Function: endopeptidase activity (GO:0004175),Molecular Function: threonine-type endopeptidase activity (GO:0004298),Cellular Component: proteasome core complex (GO:0005839),Cellular Component: proteasome core complex%2C alpha-subunit complex (GO:0019773);InterPro=Proteasome%2C subunit alpha/beta (IPR001353),Proteasome A-type subunit (IPR023332),Nucleophile aminohydrolases%2C N-terminal (IPR029055),Proteasome alpha-subunit%2C N-terminal domain (IPR000426);NIAS_FLcDNA=001-017-E04, J033030J15;Manual Curation=October 22%2C 2015;Literature_PMID=25985140,10854779;Oryzabase=14495;Expression=AK058567;TENOR=Os03t0387100-01;KEGG=Os03t0387100-01 (EC:3.4.25.1)
Chr03	irgsp1_rep	five_prime_UTR	15420151	15420281	.	+	.	Parent=Os03t0387100-01
Chr03	irgsp1_rep	CDS	15420282	15420322	.	+	0	Parent=Os03t0387100-01
Chr03	irgsp1_rep	CDS	15420413	15420489	.	+	1	Parent=Os03t0387100-01
Chr03	irgsp1_rep	CDS	15421620	15421684	.	+	2	Parent=Os03t0387100-01
Chr03	irgsp1_rep	CDS	15421771	15421817	.	+	0	Parent=Os03t0387100-01
Chr03	irgsp1_rep	CDS	15422477	15422552	.	+	1	Parent=Os03t0387100-01
Chr03	irgsp1_rep	CDS	15422714	15422781	.	+	0	Parent=Os03t0387100-01
Chr03	irgsp1_rep	CDS	15423075	15423144	.	+	1	Parent=Os03t0387100-01
Chr03	irgsp1_rep	CDS	15423306	15423391	.	+	0	Parent=Os03t0387100-01
Chr03	irgsp1_rep	CDS	15423610	15423672	.	+	1	Parent=Os03t0387100-01
Chr03	irgsp1_rep	CDS	15423754	15423819	.	+	1	Parent=Os03t0387100-01
Chr03	irgsp1_rep	CDS	15424220	15424268	.	+	1	Parent=Os03t0387100-01
Chr03	irgsp1_rep	three_prime_UTR	15424269	15424562	.	+	.	Parent=Os03t0387100-01
Chr03	irgsp1_rep	mRNA	15436640	15437717	.	+	.	ID=Os03t0387300-01;Name=Os03t0387300-01;Locus_id=Os03g0387300;Oryzabase Gene Symbol Synonym(s)=OsVQ12;Oryzabase Gene Name Synonym(s)=VQ motif-containing protein 12;Note=Similar to VQ motif family protein%2C expressed.;Transcript_evidence=AK107546 (DDBJ%2C Best hit);ORF_evidence=Q10KE8 (UniProt);InterPro=VQ (IPR008889);NIAS_FLcDNA=002-130-A04;Oryzabase=13628;TENOR=Os03t0387300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	15436640	15436640	.	+	.	Parent=Os03t0387300-01
Chr03	irgsp1_rep	CDS	15436641	15437495	.	+	0	Parent=Os03t0387300-01
Chr03	irgsp1_rep	three_prime_UTR	15437496	15437717	.	+	.	Parent=Os03t0387300-01
Chr03	irgsp1_rep	mRNA	15453264	15457559	.	+	.	ID=Os03t0387500-01;Name=Os03t0387500-01;Locus_id=Os03g0387500;Note=Conserved hypothetical protein.;Transcript_evidence=AK070724 (DDBJ%2C Best hit),AK104989 (DDBJ%2C Best hit);ORF_evidence=B9FNQ5 (UniProt);NIAS_FLcDNA=J023056A07,001-001-D01;TENOR=Os03t0387500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	15453264	15453420	.	+	.	Parent=Os03t0387500-01
Chr03	irgsp1_rep	CDS	15453421	15453630	.	+	0	Parent=Os03t0387500-01
Chr03	irgsp1_rep	three_prime_UTR	15453631	15453669	.	+	.	Parent=Os03t0387500-01
Chr03	irgsp1_rep	three_prime_UTR	15453776	15454354	.	+	.	Parent=Os03t0387500-01
Chr03	irgsp1_rep	three_prime_UTR	15456162	15457559	.	+	.	Parent=Os03t0387500-01
Chr03	irgsp1_rep	mRNA	15460811	15463109	.	+	.	ID=Os03t0387800-01;Name=Os03t0387800-01;Locus_id=Os03g0387800;Note=Similar to mRNA%2C clone: RTFL01-43-H20.;Transcript_evidence=AK060532 (DDBJ%2C Best hit),AK068724 (DDBJ%2C Best hit),AK101680 (DDBJ%2C Best hit);ORF_evidence=E4MY59 (UniProt);NIAS_FLcDNA=001-021-A03,J013161E13,J033058I20;TENOR=Os03t0387800-01
Chr03	irgsp1_rep	five_prime_UTR	15460811	15460870	.	+	.	Parent=Os03t0387800-01
Chr03	irgsp1_rep	CDS	15460871	15460999	.	+	0	Parent=Os03t0387800-01
Chr03	irgsp1_rep	CDS	15461072	15461145	.	+	0	Parent=Os03t0387800-01
Chr03	irgsp1_rep	CDS	15461291	15461420	.	+	1	Parent=Os03t0387800-01
Chr03	irgsp1_rep	CDS	15462116	15462385	.	+	0	Parent=Os03t0387800-01
Chr03	irgsp1_rep	CDS	15462466	15462735	.	+	0	Parent=Os03t0387800-01
Chr03	irgsp1_rep	three_prime_UTR	15462736	15463109	.	+	.	Parent=Os03t0387800-01
Chr03	irgsp1_rep	mRNA	15461165	15463617	.	-	.	ID=Os03t0387850-01;Name=Os03t0387850-01;Locus_id=Os03g0387850;Note=Hypothetical gene.;Transcript_evidence=AK288423 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090032H02;TENOR=Os03t0387850-01;KEGG=Os03t0387850-01
Chr03	irgsp1_rep	five_prime_UTR	15462850	15463617	.	-	.	Parent=Os03t0387850-01
Chr03	irgsp1_rep	CDS	15462307	15462849	.	-	0	Parent=Os03t0387850-01
Chr03	irgsp1_rep	three_prime_UTR	15461165	15462306	.	-	.	Parent=Os03t0387850-01
Chr03	irgsp1_rep	mRNA	15467843	15473834	.	+	.	ID=Os03t0387900-01;Name=Os03t0387900-01;Locus_id=Os03g0387900;Note=Conserved hypothetical protein.;Transcript_evidence=AK100539 (DDBJ%2C Best hit);ORF_evidence=Q10KE3 (UniProt);NIAS_FLcDNA=J023102F06;Expression=AK100539;TENOR=Os03t0387900-01;KEGG=Os03t0387900-01
Chr03	irgsp1_rep	five_prime_UTR	15467843	15468077	.	+	.	Parent=Os03t0387900-01
Chr03	irgsp1_rep	five_prime_UTR	15468577	15468608	.	+	.	Parent=Os03t0387900-01
Chr03	irgsp1_rep	five_prime_UTR	15468928	15469016	.	+	.	Parent=Os03t0387900-01
Chr03	irgsp1_rep	CDS	15469017	15469040	.	+	0	Parent=Os03t0387900-01
Chr03	irgsp1_rep	CDS	15470071	15470528	.	+	0	Parent=Os03t0387900-01
Chr03	irgsp1_rep	CDS	15470638	15470915	.	+	1	Parent=Os03t0387900-01
Chr03	irgsp1_rep	CDS	15471003	15471076	.	+	2	Parent=Os03t0387900-01
Chr03	irgsp1_rep	CDS	15471577	15471796	.	+	0	Parent=Os03t0387900-01
Chr03	irgsp1_rep	CDS	15471901	15472172	.	+	2	Parent=Os03t0387900-01
Chr03	irgsp1_rep	CDS	15472479	15472627	.	+	0	Parent=Os03t0387900-01
Chr03	irgsp1_rep	CDS	15473100	15473229	.	+	1	Parent=Os03t0387900-01
Chr03	irgsp1_rep	CDS	15473325	15473438	.	+	0	Parent=Os03t0387900-01
Chr03	irgsp1_rep	three_prime_UTR	15473439	15473834	.	+	.	Parent=Os03t0387900-01
Chr03	irgsp1_rep	mRNA	15467886	15473721	.	+	.	ID=Os03t0387900-02;Name=Os03t0387900-02;Locus_id=Os03g0387900;Note=Conserved hypothetical protein.;Transcript_evidence=AK105057 (DDBJ%2C Best hit);ORF_evidence=Q10KE3 (UniProt);NIAS_FLcDNA=001-043-C07;Expression=AK105057;TENOR=Os03t0387900-02;KEGG=Os03t0387900-02
Chr03	irgsp1_rep	five_prime_UTR	15467886	15468077	.	+	.	Parent=Os03t0387900-02
Chr03	irgsp1_rep	five_prime_UTR	15468928	15469016	.	+	.	Parent=Os03t0387900-02
Chr03	irgsp1_rep	CDS	15469017	15469040	.	+	0	Parent=Os03t0387900-02
Chr03	irgsp1_rep	CDS	15470071	15470528	.	+	0	Parent=Os03t0387900-02
Chr03	irgsp1_rep	CDS	15470638	15470915	.	+	1	Parent=Os03t0387900-02
Chr03	irgsp1_rep	CDS	15471003	15471076	.	+	2	Parent=Os03t0387900-02
Chr03	irgsp1_rep	CDS	15471577	15471796	.	+	0	Parent=Os03t0387900-02
Chr03	irgsp1_rep	CDS	15471901	15472172	.	+	2	Parent=Os03t0387900-02
Chr03	irgsp1_rep	CDS	15472479	15472627	.	+	0	Parent=Os03t0387900-02
Chr03	irgsp1_rep	CDS	15473100	15473229	.	+	1	Parent=Os03t0387900-02
Chr03	irgsp1_rep	CDS	15473325	15473438	.	+	0	Parent=Os03t0387900-02
Chr03	irgsp1_rep	three_prime_UTR	15473439	15473721	.	+	.	Parent=Os03t0387900-02
Chr03	irgsp1_rep	mRNA	15467967	15473684	.	+	.	ID=Os03t0387900-03;Name=Os03t0387900-03;Locus_id=Os03g0387900;Note=Conserved hypothetical protein.;Transcript_evidence=AK099666 (DDBJ%2C Best hit);ORF_evidence=Q10KE3 (UniProt);NIAS_FLcDNA=J013067D14;Expression=AK099666;TENOR=Os03t0387900-03;KEGG=Os03t0387900-03
Chr03	irgsp1_rep	five_prime_UTR	15467967	15468077	.	+	.	Parent=Os03t0387900-03
Chr03	irgsp1_rep	five_prime_UTR	15468928	15469016	.	+	.	Parent=Os03t0387900-03
Chr03	irgsp1_rep	CDS	15469017	15469040	.	+	0	Parent=Os03t0387900-03
Chr03	irgsp1_rep	CDS	15470071	15470528	.	+	0	Parent=Os03t0387900-03
Chr03	irgsp1_rep	CDS	15470638	15470915	.	+	1	Parent=Os03t0387900-03
Chr03	irgsp1_rep	CDS	15471003	15471076	.	+	2	Parent=Os03t0387900-03
Chr03	irgsp1_rep	CDS	15471577	15471796	.	+	0	Parent=Os03t0387900-03
Chr03	irgsp1_rep	CDS	15471901	15472172	.	+	2	Parent=Os03t0387900-03
Chr03	irgsp1_rep	CDS	15472479	15472627	.	+	0	Parent=Os03t0387900-03
Chr03	irgsp1_rep	CDS	15473100	15473229	.	+	1	Parent=Os03t0387900-03
Chr03	irgsp1_rep	CDS	15473325	15473438	.	+	0	Parent=Os03t0387900-03
Chr03	irgsp1_rep	three_prime_UTR	15473439	15473684	.	+	.	Parent=Os03t0387900-03
Chr03	irgsp1_rep	mRNA	15470863	15472743	.	+	.	ID=Os03t0387900-04;Name=Os03t0387900-04;Locus_id=Os03g0387900;Note=Hypothetical conserved gene.;Transcript_evidence=AK063085 (DDBJ%2C Best hit);ORF_evidence=Q10KE2 (UniProt);NIAS_FLcDNA=001-111-A07;Expression=AK063085;TENOR=Os03t0387900-04;KEGG=Os03t0387900-04
Chr03	irgsp1_rep	five_prime_UTR	15470863	15470863	.	+	.	Parent=Os03t0387900-04
Chr03	irgsp1_rep	CDS	15470864	15470915	.	+	0	Parent=Os03t0387900-04
Chr03	irgsp1_rep	CDS	15471003	15471076	.	+	2	Parent=Os03t0387900-04
Chr03	irgsp1_rep	CDS	15471577	15471796	.	+	0	Parent=Os03t0387900-04
Chr03	irgsp1_rep	CDS	15471901	15472172	.	+	2	Parent=Os03t0387900-04
Chr03	irgsp1_rep	CDS	15472479	15472670	.	+	0	Parent=Os03t0387900-04
Chr03	irgsp1_rep	three_prime_UTR	15472671	15472743	.	+	.	Parent=Os03t0387900-04
Chr03	irgsp1_rep	mRNA	15475307	15478270	.	-	.	ID=Os03t0388000-01;Name=Os03t0388000-01;Locus_id=Os03g0388000;CGSNL Gene Symbol=SC35C;Oryzabase Gene Symbol Synonym(s)=Os-SC25%2C OsSC25%2C Os-SC35c%2C OsSC35c;Oryzabase Gene Name Synonym(s)=SC subfamily protein 35c;Note=Similar to Splicing factor SC35.;Transcript_evidence=AK073057 (DDBJ%2C Best hit);ORF_evidence=B6T6J9 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033020I19;Oryzabase=22740;Expression=AK073057;TENOR=Os03t0388000-01;KEGG=Os03t0388000-01
Chr03	irgsp1_rep	five_prime_UTR	15478173	15478270	.	-	.	Parent=Os03t0388000-01
Chr03	irgsp1_rep	CDS	15478097	15478172	.	-	0	Parent=Os03t0388000-01
Chr03	irgsp1_rep	CDS	15477918	15477996	.	-	2	Parent=Os03t0388000-01
Chr03	irgsp1_rep	CDS	15477731	15477810	.	-	1	Parent=Os03t0388000-01
Chr03	irgsp1_rep	CDS	15477553	15477619	.	-	2	Parent=Os03t0388000-01
Chr03	irgsp1_rep	CDS	15476739	15476810	.	-	1	Parent=Os03t0388000-01
Chr03	irgsp1_rep	CDS	15475954	15476151	.	-	1	Parent=Os03t0388000-01
Chr03	irgsp1_rep	CDS	15475773	15475818	.	-	1	Parent=Os03t0388000-01
Chr03	irgsp1_rep	three_prime_UTR	15475736	15475772	.	-	.	Parent=Os03t0388000-01
Chr03	irgsp1_rep	three_prime_UTR	15475307	15475655	.	-	.	Parent=Os03t0388000-01
Chr03	irgsp1_rep	mRNA	15475460	15477241	.	-	.	ID=Os03t0388000-02;Name=Os03t0388000-02;Locus_id=Os03g0388000;CGSNL Gene Symbol=SC35C;Oryzabase Gene Symbol Synonym(s)=Os-SC25%2C OsSC25%2C Os-SC35c%2C OsSC35c;Oryzabase Gene Name Synonym(s)=SC subfamily protein 35c;Note=Hypothetical conserved gene.;Transcript_evidence=AK062658 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-105-F02;Oryzabase=22740;Expression=AK062658;TENOR=Os03t0388000-02;KEGG=Os03t0388000-02
Chr03	irgsp1_rep	five_prime_UTR	15477050	15477241	.	-	.	Parent=Os03t0388000-02
Chr03	irgsp1_rep	CDS	15476739	15477049	.	-	0	Parent=Os03t0388000-02
Chr03	irgsp1_rep	CDS	15475954	15476151	.	-	1	Parent=Os03t0388000-02
Chr03	irgsp1_rep	CDS	15475773	15475818	.	-	1	Parent=Os03t0388000-02
Chr03	irgsp1_rep	three_prime_UTR	15475736	15475772	.	-	.	Parent=Os03t0388000-02
Chr03	irgsp1_rep	three_prime_UTR	15475460	15475655	.	-	.	Parent=Os03t0388000-02
Chr03	irgsp1_rep	mRNA	15479861	15482139	.	-	.	ID=Os03t0388100-01;Name=Os03t0388100-01;Locus_id=Os03g0388100;Note=ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter domain containing protein.;Transcript_evidence=AK059680 (DDBJ%2C Best hit);ORF_evidence=NP_001150997.1 (RefSeq);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121),Heavy-metal-associated%2C conserved site (IPR017969);NIAS_FLcDNA=001-031-H07;Expression=AK059680;TENOR=Os03t0388100-01;KEGG=Os03t0388100-01
Chr03	irgsp1_rep	five_prime_UTR	15482037	15482139	.	-	.	Parent=Os03t0388100-01
Chr03	irgsp1_rep	CDS	15481725	15482036	.	-	0	Parent=Os03t0388100-01
Chr03	irgsp1_rep	CDS	15481599	15481652	.	-	0	Parent=Os03t0388100-01
Chr03	irgsp1_rep	CDS	15480478	15480631	.	-	0	Parent=Os03t0388100-01
Chr03	irgsp1_rep	CDS	15480181	15480215	.	-	2	Parent=Os03t0388100-01
Chr03	irgsp1_rep	three_prime_UTR	15479861	15480180	.	-	.	Parent=Os03t0388100-01
Chr03	irgsp1_rep	mRNA	15479890	15482111	.	-	.	ID=Os03t0388100-02;Name=Os03t0388100-02;Locus_id=Os03g0388100;Note=ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter domain containing protein.;Transcript_evidence=AK099133 (DDBJ%2C Best hit);ORF_evidence=NP_001150997.1 (RefSeq);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121),Heavy-metal-associated%2C conserved site (IPR017969);NIAS_FLcDNA=J023049J05;Expression=AK099133;TENOR=Os03t0388100-02;KEGG=Os03t0388100-02
Chr03	irgsp1_rep	five_prime_UTR	15482037	15482111	.	-	.	Parent=Os03t0388100-02
Chr03	irgsp1_rep	CDS	15481725	15482036	.	-	0	Parent=Os03t0388100-02
Chr03	irgsp1_rep	CDS	15481599	15481652	.	-	0	Parent=Os03t0388100-02
Chr03	irgsp1_rep	CDS	15480478	15480631	.	-	0	Parent=Os03t0388100-02
Chr03	irgsp1_rep	CDS	15480181	15480215	.	-	2	Parent=Os03t0388100-02
Chr03	irgsp1_rep	three_prime_UTR	15479890	15480180	.	-	.	Parent=Os03t0388100-02
Chr03	irgsp1_rep	mRNA	15484240	15488426	.	+	.	ID=Os03t0388300-01;Name=Os03t0388300-01;Locus_id=Os03g0388300;Note=Conserved hypothetical protein.;Transcript_evidence=AK288582 (DDBJ%2C Best hit);ORF_evidence=Q6ETB5 (UniProt);NIAS_FLcDNA=J090049I19;TENOR=Os03t0388300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	15484240	15484616	.	+	.	Parent=Os03t0388300-01
Chr03	irgsp1_rep	CDS	15484617	15484892	.	+	0	Parent=Os03t0388300-01
Chr03	irgsp1_rep	three_prime_UTR	15484893	15488426	.	+	.	Parent=Os03t0388300-01
Chr03	irgsp1_rep	mRNA	15488402	15491826	.	-	.	ID=Os03t0388366-00;Name=Os03t0388366-00;Locus_id=Os03g0388366;Note=Ribosomal protein L25/L23 domain containing protein.;Transcript_evidence=FP098656 (DDBJ);ORF_evidence=A2YKJ6 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L25/L23 (IPR013025);TENOR=Os03t0388366-00
Chr03	irgsp1_rep	five_prime_UTR	15491716	15491826	.	-	.	Parent=Os03t0388366-00
Chr03	irgsp1_rep	CDS	15491482	15491715	.	-	0	Parent=Os03t0388366-00
Chr03	irgsp1_rep	three_prime_UTR	15491211	15491481	.	-	.	Parent=Os03t0388366-00
Chr03	irgsp1_rep	three_prime_UTR	15488402	15488495	.	-	.	Parent=Os03t0388366-00
Chr03	irgsp1_rep	mRNA	15499421	15499571	.	-	.	ID=Os03t0388432-00;Name=Os03t0388432-00;Locus_id=Os03g0388432;Note=Non-protein coding transcript.;Transcript_evidence=BT084865 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0388432-00
Chr03	irgsp1_rep	exon	15499421	15499571	.	-	.	Parent=Os03t0388432-00
Chr03	irgsp1_rep	mRNA	15505524	15507726	.	+	.	ID=Os03t0388500-01;Name=Os03t0388500-01;Locus_id=Os03g0388500;Oryzabase Gene Name Synonym(s)=CaM-binding transcription factor homolog%2C OsCBT homolog%2C CBT homolog;Note=Similar to Anther ethylene-upregulated protein ER1 (Fragment).;Transcript_evidence=AK070350 (DDBJ%2C Best hit);ORF_evidence=Q10KD1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);NIAS_FLcDNA=J023052K16;Oryzabase=19601;Expression=AK070350;TENOR=Os03t0388500-01;KEGG=Os03t0388500-01
Chr03	irgsp1_rep	five_prime_UTR	15505524	15505525	.	+	.	Parent=Os03t0388500-01
Chr03	irgsp1_rep	CDS	15505526	15506089	.	+	0	Parent=Os03t0388500-01
Chr03	irgsp1_rep	CDS	15506638	15506967	.	+	0	Parent=Os03t0388500-01
Chr03	irgsp1_rep	three_prime_UTR	15506968	15507726	.	+	.	Parent=Os03t0388500-01
Chr03	irgsp1_rep	mRNA	15512510	15514115	.	-	.	ID=Os03t0388600-01;Name=Os03t0388600-01;Locus_id=Os03g0388600;Note=Hypothetical conserved gene.;Transcript_evidence=AK243428 (DDBJ%2C Best hit);ORF_evidence=NP_197179.2 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J100067L15;TENOR=Os03t0388600-01;KEGG=Os03t0388600-01
Chr03	irgsp1_rep	five_prime_UTR	15513877	15514115	.	-	.	Parent=Os03t0388600-01
Chr03	irgsp1_rep	CDS	15513735	15513876	.	-	0	Parent=Os03t0388600-01
Chr03	irgsp1_rep	CDS	15513487	15513616	.	-	2	Parent=Os03t0388600-01
Chr03	irgsp1_rep	CDS	15512596	15513277	.	-	1	Parent=Os03t0388600-01
Chr03	irgsp1_rep	three_prime_UTR	15512510	15512595	.	-	.	Parent=Os03t0388600-01
Chr03	irgsp1_rep	mRNA	15512722	15513284	.	+	.	ID=Os03t0388650-00;Name=Os03t0388650-00;Locus_id=Os03g0388650;Note=Hypothetical protein.;Transcript_evidence=EU971393 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0388650-00
Chr03	irgsp1_rep	five_prime_UTR	15512722	15512754	.	+	.	Parent=Os03t0388650-00
Chr03	irgsp1_rep	CDS	15512755	15513284	.	+	0	Parent=Os03t0388650-00
Chr03	irgsp1_rep	mRNA	15528226	15530171	.	+	.	ID=Os03t0388800-01;Name=Os03t0388800-01;Locus_id=Os03g0388800;Note=Similar to Hydrolase.;Transcript_evidence=AK288578 (DDBJ%2C Best hit);ORF_evidence=B6SWJ5 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Alpha/beta hydrolase fold-1 (IPR000073),Epoxide hydrolase-like (IPR000639);NIAS_FLcDNA=J090049D21;TENOR=Os03t0388800-01;KEGG=Os03t0388800-01
Chr03	irgsp1_rep	five_prime_UTR	15528226	15528329	.	+	.	Parent=Os03t0388800-01
Chr03	irgsp1_rep	CDS	15528330	15529028	.	+	0	Parent=Os03t0388800-01
Chr03	irgsp1_rep	CDS	15529136	15529228	.	+	0	Parent=Os03t0388800-01
Chr03	irgsp1_rep	CDS	15529317	15529384	.	+	0	Parent=Os03t0388800-01
Chr03	irgsp1_rep	CDS	15529537	15529675	.	+	1	Parent=Os03t0388800-01
Chr03	irgsp1_rep	CDS	15529947	15529964	.	+	0	Parent=Os03t0388800-01
Chr03	irgsp1_rep	three_prime_UTR	15529965	15530171	.	+	.	Parent=Os03t0388800-01
Chr03	irgsp1_rep	mRNA	15530630	15532454	.	-	.	ID=Os03t0388900-01;Name=Os03t0388900-01;Locus_id=Os03g0388900;CGSNL Gene Symbol=MC1;CGSNL Gene Name=METACASPASE 1;Oryzabase Gene Symbol Synonym(s)=OsMC1;Oryzabase Gene Name Synonym(s)=Metacaspase 1;Note=Peptidase C14%2C caspase catalytic domain containing protein.;Transcript_evidence=AK243542 (DDBJ%2C Best hit);ORF_evidence=NP_001147740.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197);InterPro=Peptidase C14%2C caspase catalytic (IPR011600);NIAS_FLcDNA=J100078J12;Oryzabase=18154;TENOR=Os03t0388900-01;KEGG=Os03t0388900-01
Chr03	irgsp1_rep	five_prime_UTR	15532384	15532454	.	-	.	Parent=Os03t0388900-01
Chr03	irgsp1_rep	CDS	15531981	15532383	.	-	0	Parent=Os03t0388900-01
Chr03	irgsp1_rep	CDS	15531436	15531887	.	-	2	Parent=Os03t0388900-01
Chr03	irgsp1_rep	CDS	15531161	15531352	.	-	0	Parent=Os03t0388900-01
Chr03	irgsp1_rep	CDS	15530962	15531021	.	-	0	Parent=Os03t0388900-01
Chr03	irgsp1_rep	three_prime_UTR	15530630	15530961	.	-	.	Parent=Os03t0388900-01
Chr03	irgsp1_rep	mRNA	15563374	15564927	.	-	.	ID=Os03t0389000-00;Name=Os03t0389000-00;Locus_id=Os03g0389000;CGSNL Gene Symbol=MC3;CGSNL Gene Name=METACASPASE 3;Oryzabase Gene Symbol Synonym(s)=OsMC3%2C OsSTA102;Oryzabase Gene Name Synonym(s)=Metacaspase 3;Note=Similar to LOL3.;Transcript_evidence=EU956415 (DDBJ);ORF_evidence=NP_001050268.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197);InterPro=Peptidase C14%2C caspase catalytic (IPR011600);Oryzabase=18156;TENOR=Os03t0389000-00;KEGG=Os03t0389000-00
Chr03	irgsp1_rep	CDS	15564465	15564927	.	-	0	Parent=Os03t0389000-00
Chr03	irgsp1_rep	CDS	15563927	15564379	.	-	2	Parent=Os03t0389000-00
Chr03	irgsp1_rep	CDS	15563627	15563830	.	-	2	Parent=Os03t0389000-00
Chr03	irgsp1_rep	CDS	15563374	15563528	.	-	2	Parent=Os03t0389000-00
Chr03	irgsp1_rep	mRNA	15567899	15572135	.	-	.	ID=Os03t0389100-01;Name=Os03t0389100-01;Locus_id=Os03g0389100;CGSNL Gene Symbol=MC8;CGSNL Gene Name=METACASPASE 8;Oryzabase Gene Symbol Synonym(s)=OsMC8;Oryzabase Gene Name Synonym(s)=Metacaspase 8;Note=Peptidase C14%2C caspase catalytic domain containing protein.;Transcript_evidence=AK063170 (DDBJ%2C Best hit);ORF_evidence=A2XHI3 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197);InterPro=Peptidase C14%2C caspase catalytic (IPR011600);NIAS_FLcDNA=001-110-G09;Oryzabase=18160;Expression=AK063170;TENOR=Os03t0389100-01;KEGG=Os03t0389100-01
Chr03	irgsp1_rep	five_prime_UTR	15572102	15572135	.	-	.	Parent=Os03t0389100-01
Chr03	irgsp1_rep	CDS	15571942	15572101	.	-	0	Parent=Os03t0389100-01
Chr03	irgsp1_rep	CDS	15571494	15571830	.	-	2	Parent=Os03t0389100-01
Chr03	irgsp1_rep	CDS	15569534	15569684	.	-	1	Parent=Os03t0389100-01
Chr03	irgsp1_rep	CDS	15568964	15569164	.	-	0	Parent=Os03t0389100-01
Chr03	irgsp1_rep	CDS	15568303	15568362	.	-	0	Parent=Os03t0389100-01
Chr03	irgsp1_rep	three_prime_UTR	15567899	15568302	.	-	.	Parent=Os03t0389100-01
Chr03	irgsp1_rep	mRNA	15582912	15583637	.	-	.	ID=Os03t0389175-00;Name=Os03t0389175-00;Locus_id=Os03g0389175;Note=Hypothetical gene.;Transcript_evidence=CT837702 (DDBJ%2C Best hit);ORF_evidence=GeneMark;TENOR=Os03t0389175-00;KEGG=Os03t0389175-00
Chr03	irgsp1_rep	five_prime_UTR	15583400	15583637	.	-	.	Parent=Os03t0389175-00
Chr03	irgsp1_rep	CDS	15583340	15583399	.	-	0	Parent=Os03t0389175-00
Chr03	irgsp1_rep	CDS	15583013	15583333	.	-	0	Parent=Os03t0389175-00
Chr03	irgsp1_rep	three_prime_UTR	15582912	15583012	.	-	.	Parent=Os03t0389175-00
Chr03	irgsp1_rep	mRNA	15584826	15585200	.	-	.	ID=Os03t0389400-00;Name=Os03t0389400-00;Locus_id=Os03g0389400;CGSNL Gene Symbol=MC2;CGSNL Gene Name=METACASPASE 2;Oryzabase Gene Symbol Synonym(s)=OsMC2;Oryzabase Gene Name Synonym(s)=Metacaspase 2;Note=Similar to LOL3.;Transcript_evidence=CT835282 (DDBJ%2C Best hit);ORF_evidence=NP_001152418.1 (RefSeq);Oryzabase=18155;TENOR=Os03t0389400-00;KEGG=Os03t0389400-00
Chr03	irgsp1_rep	five_prime_UTR	15585199	15585200	.	-	.	Parent=Os03t0389400-00
Chr03	irgsp1_rep	CDS	15585025	15585198	.	-	0	Parent=Os03t0389400-00
Chr03	irgsp1_rep	three_prime_UTR	15584826	15585024	.	-	.	Parent=Os03t0389400-00
Chr03	irgsp1_rep	mRNA	15586221	15587152	.	-	.	ID=Os03t0389501-00;Name=Os03t0389501-00;Locus_id=Os03g0389501;CGSNL Gene Symbol=MC2;CGSNL Gene Name=METACASPASE 2;Oryzabase Gene Symbol Synonym(s)=OsMC2;Oryzabase Gene Name Synonym(s)=Metacaspase 2;Note=Similar to LOL3.;Transcript_evidence=CT835269 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197);InterPro=Zinc finger%2C LSD1-type (IPR005735),Peptidase C14%2C caspase catalytic (IPR011600);Oryzabase=18155;TENOR=Os03t0389501-00;KEGG=Os03t0389501-00
Chr03	irgsp1_rep	five_prime_UTR	15586919	15587152	.	-	.	Parent=Os03t0389501-00
Chr03	irgsp1_rep	CDS	15586516	15586918	.	-	0	Parent=Os03t0389501-00
Chr03	irgsp1_rep	CDS	15586221	15586441	.	-	2	Parent=Os03t0389501-00
Chr03	irgsp1_rep	mRNA	15604021	15608375	.	-	.	ID=Os03t0389601-00;Name=Os03t0389601-00;Locus_id=Os03g0389601;Note=Hypothetical protein.;Transcript_evidence=tplb0022g15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0389601-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	15608133	15608375	.	-	.	Parent=Os03t0389601-00
Chr03	irgsp1_rep	five_prime_UTR	15606426	15606684	.	-	.	Parent=Os03t0389601-00
Chr03	irgsp1_rep	five_prime_UTR	15606071	15606336	.	-	.	Parent=Os03t0389601-00
Chr03	irgsp1_rep	five_prime_UTR	15604634	15604911	.	-	.	Parent=Os03t0389601-00
Chr03	irgsp1_rep	five_prime_UTR	15604523	15604523	.	-	.	Parent=Os03t0389601-00
Chr03	irgsp1_rep	CDS	15604021	15604522	.	-	0	Parent=Os03t0389601-00
Chr03	irgsp1_rep	mRNA	15603830	15608696	.	+	.	ID=Os03t0389700-01;Name=Os03t0389700-01;Locus_id=Os03g0389700;RAP-DB Gene Symbol Synonym(s)=OsDAHPS1%2C DAHPS1;RAP-DB Gene Name Synonym(s)=3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1;Oryzabase Gene Symbol Synonym(s)=OsDAHPS1%2C DAHPS1;Oryzabase Gene Name Synonym(s)=3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1;Note=3-Deoxy-D-arabino-heptulosonate 7-phosphate synthase%2C Chorismate biosynthesis;Transcript_evidence=AB122057 (Fujiminori);ORF_evidence=Q75LR2,Q10KC0;GO=Biological Process: aromatic amino acid family biosynthetic process (GO:0009073),Molecular Function: 3-deoxy-7-phosphoheptulonate synthase activity (GO:0003849);InterPro=DAHP synthetase%2C class II (IPR002480);Manual Curation=April 7%2C 2016;Literature_PMID=16496151;Oryzabase=20541;TENOR=Os03t0389700-01;KEGG=Os03t0389700-01 (EC:2.5.1.54);B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	15603830	15603941	.	+	.	Parent=Os03t0389700-01
Chr03	irgsp1_rep	CDS	15603942	15604526	.	+	0	Parent=Os03t0389700-01
Chr03	irgsp1_rep	CDS	15604637	15604914	.	+	0	Parent=Os03t0389700-01
Chr03	irgsp1_rep	CDS	15606074	15606350	.	+	1	Parent=Os03t0389700-01
Chr03	irgsp1_rep	CDS	15606442	15606687	.	+	0	Parent=Os03t0389700-01
Chr03	irgsp1_rep	CDS	15608135	15608416	.	+	0	Parent=Os03t0389700-01
Chr03	irgsp1_rep	three_prime_UTR	15608417	15608696	.	+	.	Parent=Os03t0389700-01
Chr03	irgsp1_rep	mRNA	15614227	15621432	.	+	.	ID=Os03t0389900-01;Name=Os03t0389900-01;Locus_id=Os03g0389900;Oryzabase Gene Symbol Synonym(s)=JMJ711%2C OsFbox149%2C Os_F0347%2C DLN88%2C OsDLN88;Oryzabase Gene Name Synonym(s)=Jumonji 711%2C F-box protein 149%2C DLN repressor 88%2C DLN motif protein 88;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK065339 (DDBJ%2C Best hit);ORF_evidence=NP_177951.6 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=F-box domain%2C cyclin-like (IPR001810),Aminoglycoside phosphotransferase (IPR002575),Transcription factor jumonji/aspartyl beta-hydroxylase (IPR003347),Protein kinase-like domain (IPR011009),Transcription factor jumonji (IPR013129),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013000L11;Oryzabase=15219;Expression=AK065339;TENOR=Os03t0389900-01;KEGG=Os03t0389900-01
Chr03	irgsp1_rep	five_prime_UTR	15614227	15614335	.	+	.	Parent=Os03t0389900-01
Chr03	irgsp1_rep	CDS	15614336	15614463	.	+	0	Parent=Os03t0389900-01
Chr03	irgsp1_rep	CDS	15615278	15615385	.	+	1	Parent=Os03t0389900-01
Chr03	irgsp1_rep	CDS	15615525	15615580	.	+	1	Parent=Os03t0389900-01
Chr03	irgsp1_rep	CDS	15615655	15615797	.	+	2	Parent=Os03t0389900-01
Chr03	irgsp1_rep	CDS	15615912	15616109	.	+	0	Parent=Os03t0389900-01
Chr03	irgsp1_rep	CDS	15616183	15616382	.	+	0	Parent=Os03t0389900-01
Chr03	irgsp1_rep	CDS	15616867	15616966	.	+	1	Parent=Os03t0389900-01
Chr03	irgsp1_rep	CDS	15617051	15617632	.	+	0	Parent=Os03t0389900-01
Chr03	irgsp1_rep	CDS	15617716	15617838	.	+	0	Parent=Os03t0389900-01
Chr03	irgsp1_rep	CDS	15618310	15618390	.	+	0	Parent=Os03t0389900-01
Chr03	irgsp1_rep	CDS	15618470	15618777	.	+	0	Parent=Os03t0389900-01
Chr03	irgsp1_rep	CDS	15618859	15619098	.	+	1	Parent=Os03t0389900-01
Chr03	irgsp1_rep	CDS	15619543	15619627	.	+	1	Parent=Os03t0389900-01
Chr03	irgsp1_rep	CDS	15619711	15619888	.	+	0	Parent=Os03t0389900-01
Chr03	irgsp1_rep	CDS	15620335	15620509	.	+	2	Parent=Os03t0389900-01
Chr03	irgsp1_rep	CDS	15621108	15621264	.	+	1	Parent=Os03t0389900-01
Chr03	irgsp1_rep	three_prime_UTR	15621265	15621432	.	+	.	Parent=Os03t0389900-01
Chr03	irgsp1_rep	mRNA	15618648	15621437	.	+	.	ID=Os03t0389900-02;Name=Os03t0389900-02;Locus_id=Os03g0389900;Oryzabase Gene Symbol Synonym(s)=JMJ711%2C OsFbox149%2C Os_F0347%2C DLN88%2C OsDLN88;Oryzabase Gene Name Synonym(s)=Jumonji 711%2C F-box protein 149%2C DLN repressor 88%2C DLN motif protein 88;Note=Hypothetical conserved gene.;Transcript_evidence=AK062245 (DDBJ%2C Best hit);ORF_evidence=A2XHI8 (UniProt);GO=Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Aminoglycoside phosphotransferase (IPR002575),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=001-047-F03;Oryzabase=15219;Expression=AK062245;TENOR=Os03t0389900-02;KEGG=Os03t0389900-02
Chr03	irgsp1_rep	five_prime_UTR	15618648	15618649	.	+	.	Parent=Os03t0389900-02
Chr03	irgsp1_rep	CDS	15618650	15618777	.	+	0	Parent=Os03t0389900-02
Chr03	irgsp1_rep	CDS	15618859	15619098	.	+	1	Parent=Os03t0389900-02
Chr03	irgsp1_rep	CDS	15619543	15619627	.	+	1	Parent=Os03t0389900-02
Chr03	irgsp1_rep	CDS	15619711	15619888	.	+	0	Parent=Os03t0389900-02
Chr03	irgsp1_rep	CDS	15620335	15620509	.	+	2	Parent=Os03t0389900-02
Chr03	irgsp1_rep	CDS	15621108	15621264	.	+	1	Parent=Os03t0389900-02
Chr03	irgsp1_rep	three_prime_UTR	15621265	15621437	.	+	.	Parent=Os03t0389900-02
Chr03	irgsp1_rep	mRNA	15622204	15624515	.	-	.	ID=Os03t0390000-02;Name=Os03t0390000-02;Locus_id=Os03g0390000;Oryzabase Gene Symbol Synonym(s)=RPS6%2C RPS6a%2C RPS6A%2C OsRPS6%2C OsRPS6a;Oryzabase Gene Name Synonym(s)=Ribosomal protein S6%2C Ribosomal protein S6a;Note=Similar to Ribosomal protein s6 RPS6-2.;Transcript_evidence=AK121621 (DDBJ%2C Best hit),AK061827 (DDBJ%2C Best hit);ORF_evidence=A2XHI9 (UniProt);NIAS_FLcDNA=J033045B01,001-040-C07;Oryzabase=17700;Expression=AK121621;TENOR=Os03t0390000-02;KEGG=Os03t0390000-02
Chr03	irgsp1_rep	five_prime_UTR	15624478	15624515	.	-	.	Parent=Os03t0390000-02
Chr03	irgsp1_rep	CDS	15624472	15624477	.	-	0	Parent=Os03t0390000-02
Chr03	irgsp1_rep	CDS	15624284	15624348	.	-	0	Parent=Os03t0390000-02
Chr03	irgsp1_rep	CDS	15623468	15623525	.	-	1	Parent=Os03t0390000-02
Chr03	irgsp1_rep	CDS	15623273	15623381	.	-	0	Parent=Os03t0390000-02
Chr03	irgsp1_rep	CDS	15622905	15623177	.	-	2	Parent=Os03t0390000-02
Chr03	irgsp1_rep	CDS	15622445	15622671	.	-	2	Parent=Os03t0390000-02
Chr03	irgsp1_rep	three_prime_UTR	15622204	15622444	.	-	.	Parent=Os03t0390000-02
Chr03	irgsp1_rep	mRNA	15628109	15632425	.	-	.	ID=Os03t0390200-01;Name=Os03t0390200-01;Locus_id=Os03g0390200;RAP-DB Gene Symbol Synonym(s)=SAPK1%2C OsSAPK1;RAP-DB Gene Name Synonym(s)=STRESS/ABA-ACTIVATED PROTEIN KINASE 1%2C stress/ABA-activated protein kinase 1%2C Stress-Activated Protein Kinase 1;CGSNL Gene Symbol=SAPK1;CGSNL Gene Name=STRESS/ABA-ACTIVATED PROTEIN KINASE 1;Oryzabase Gene Symbol Synonym(s)=OsSAPK1;Oryzabase Gene Name Synonym(s)=stress/ABA-activated protein kinase 1%2C Stress-Activated Protein Kinase 1;Note=Serine/threonine protein kinase%2C Hyperosmotic stress response;Transcript_evidence=AB125302,AK068899;ORF_evidence=Q75LR7;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine/threonine/dual specificity protein kinase%2C catalytic  domain (IPR002290),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J023001G01;Manual Curation=December 11%2C 2015;Literature_PMID=15084714;Oryzabase=9809;Expression=AK068899;TENOR=Os03t0390200-01;KEGG=Os03t0390200-01 (EC:2.7.1.37, EC:2.7.11.1)
Chr03	irgsp1_rep	five_prime_UTR	15632212	15632425	.	-	.	Parent=Os03t0390200-01
Chr03	irgsp1_rep	CDS	15632092	15632211	.	-	0	Parent=Os03t0390200-01
Chr03	irgsp1_rep	CDS	15631041	15631115	.	-	0	Parent=Os03t0390200-01
Chr03	irgsp1_rep	CDS	15629872	15629973	.	-	0	Parent=Os03t0390200-01
Chr03	irgsp1_rep	CDS	15629735	15629788	.	-	0	Parent=Os03t0390200-01
Chr03	irgsp1_rep	CDS	15629558	15629650	.	-	0	Parent=Os03t0390200-01
Chr03	irgsp1_rep	CDS	15629358	15629450	.	-	0	Parent=Os03t0390200-01
Chr03	irgsp1_rep	CDS	15629150	15629254	.	-	0	Parent=Os03t0390200-01
Chr03	irgsp1_rep	CDS	15628948	15629046	.	-	0	Parent=Os03t0390200-01
Chr03	irgsp1_rep	CDS	15628537	15628824	.	-	0	Parent=Os03t0390200-01
Chr03	irgsp1_rep	three_prime_UTR	15628109	15628536	.	-	.	Parent=Os03t0390200-01
Chr03	irgsp1_rep	mRNA	15628350	15632384	.	-	.	ID=Os03t0390200-02;Name=Os03t0390200-02;Locus_id=Os03g0390200;CGSNL Gene Symbol=SAPK1;CGSNL Gene Name=STRESS/ABA-ACTIVATED PROTEIN KINASE 1;Oryzabase Gene Symbol Synonym(s)=OsSAPK1;Oryzabase Gene Name Synonym(s)=stress/ABA-activated protein kinase 1%2C Stress-Activated Protein Kinase 1;Note=Serine/threonine-protein kinase SAPK1 (EC 2.7.1.37) (Osmotic stress/abscisic acid-activated protein kinase 1).;Transcript_evidence=AK060856 (DDBJ%2C Best hit);ORF_evidence=Q75LR7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-034-F03;Oryzabase=9809;Expression=AK060856;TENOR=Os03t0390200-02;KEGG=Os03t0390200-02 (EC:2.7.1.37%2C EC:2.7.11.1)
Chr03	irgsp1_rep	five_prime_UTR	15632212	15632384	.	-	.	Parent=Os03t0390200-02
Chr03	irgsp1_rep	CDS	15632092	15632211	.	-	0	Parent=Os03t0390200-02
Chr03	irgsp1_rep	CDS	15631041	15631115	.	-	0	Parent=Os03t0390200-02
Chr03	irgsp1_rep	CDS	15629872	15629973	.	-	0	Parent=Os03t0390200-02
Chr03	irgsp1_rep	CDS	15629735	15629788	.	-	0	Parent=Os03t0390200-02
Chr03	irgsp1_rep	CDS	15629558	15629650	.	-	0	Parent=Os03t0390200-02
Chr03	irgsp1_rep	CDS	15629358	15629450	.	-	0	Parent=Os03t0390200-02
Chr03	irgsp1_rep	CDS	15629150	15629254	.	-	0	Parent=Os03t0390200-02
Chr03	irgsp1_rep	CDS	15628948	15629046	.	-	0	Parent=Os03t0390200-02
Chr03	irgsp1_rep	CDS	15628537	15628824	.	-	0	Parent=Os03t0390200-02
Chr03	irgsp1_rep	three_prime_UTR	15628350	15628536	.	-	.	Parent=Os03t0390200-02
Chr03	irgsp1_rep	mRNA	15637867	15642502	.	+	.	ID=Os03t0390400-01;Name=Os03t0390400-01;Locus_id=Os03g0390400;Oryzabase Gene Symbol Synonym(s)=OsCOX6b1%2C COX6b1%2C OsCOX6b-1%2C COX6b-1;Oryzabase Gene Name Synonym(s)=cytoChrome c oxidase subunit VIb-1;Note=Similar to CytoChrome c oxidase subunit 6b.;Transcript_evidence=AK120174 (DDBJ%2C Best hit);ORF_evidence=B6UFG8 (UniProt);GO=Cellular Component: mitochondrion (GO:0005739),Molecular Function: cytoChrome-c oxidase activity (GO:0004129);InterPro=CytoChrome c oxidase%2C subunit VIb (IPR003213);NIAS_FLcDNA=J013033A17;Oryzabase=20182;Expression=AK120174;TENOR=Os03t0390400-01;KEGG=Os03t0390400-01 (EC:1.9.3.1)
Chr03	irgsp1_rep	five_prime_UTR	15637867	15637961	.	+	.	Parent=Os03t0390400-01
Chr03	irgsp1_rep	CDS	15637962	15637997	.	+	0	Parent=Os03t0390400-01
Chr03	irgsp1_rep	CDS	15640370	15640624	.	+	0	Parent=Os03t0390400-01
Chr03	irgsp1_rep	CDS	15640699	15640781	.	+	0	Parent=Os03t0390400-01
Chr03	irgsp1_rep	CDS	15640899	15640980	.	+	1	Parent=Os03t0390400-01
Chr03	irgsp1_rep	CDS	15642168	15642221	.	+	0	Parent=Os03t0390400-01
Chr03	irgsp1_rep	three_prime_UTR	15642222	15642502	.	+	.	Parent=Os03t0390400-01
Chr03	irgsp1_rep	mRNA	15645609	15648150	.	+	.	ID=Os03t0390600-01;Name=Os03t0390600-01;Locus_id=Os03g0390600;Oryzabase Gene Name Synonym(s)=histone H3;Note=Similar to Histone H3 (Fragment).;Transcript_evidence=AK120198 (DDBJ%2C Best hit);ORF_evidence=D7SL91 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H3 (IPR000164),Histone core (IPR007125),Histone-fold (IPR009072);NIAS_FLcDNA=J013036N20;Oryzabase=15761;TENOR=Os03t0390600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	15645609	15645609	.	+	.	Parent=Os03t0390600-01
Chr03	irgsp1_rep	CDS	15645610	15645701	.	+	0	Parent=Os03t0390600-01
Chr03	irgsp1_rep	CDS	15647132	15647203	.	+	1	Parent=Os03t0390600-01
Chr03	irgsp1_rep	CDS	15647289	15647332	.	+	1	Parent=Os03t0390600-01
Chr03	irgsp1_rep	CDS	15647739	15647815	.	+	2	Parent=Os03t0390600-01
Chr03	irgsp1_rep	three_prime_UTR	15647816	15648150	.	+	.	Parent=Os03t0390600-01
Chr03	irgsp1_rep	mRNA	15645609	15648145	.	+	.	ID=Os03t0390600-02;Name=Os03t0390600-02;Locus_id=Os03g0390600;Oryzabase Gene Name Synonym(s)=histone H3;Note=Similar to Histone H3.3.;Transcript_evidence=AK063199 (DDBJ%2C Best hit),AK104901 (DDBJ%2C Best hit);ORF_evidence=XP_002310848.1 (RefSeq);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H3 (IPR000164),Histone core (IPR007125),Histone-fold (IPR009072);NIAS_FLcDNA=001-112-C06,001-046-D02;Oryzabase=15761;TENOR=Os03t0390600-02
Chr03	irgsp1_rep	five_prime_UTR	15645609	15645701	.	+	.	Parent=Os03t0390600-02
Chr03	irgsp1_rep	CDS	15647132	15647203	.	+	0	Parent=Os03t0390600-02
Chr03	irgsp1_rep	CDS	15647289	15647365	.	+	0	Parent=Os03t0390600-02
Chr03	irgsp1_rep	CDS	15647457	15647547	.	+	1	Parent=Os03t0390600-02
Chr03	irgsp1_rep	CDS	15647645	15647815	.	+	0	Parent=Os03t0390600-02
Chr03	irgsp1_rep	three_prime_UTR	15647816	15648145	.	+	.	Parent=Os03t0390600-02
Chr03	irgsp1_rep	mRNA	15647845	15648151	.	+	.	ID=Os03t0390600-03;Name=Os03t0390600-03;Locus_id=Os03g0390600;Oryzabase Gene Name Synonym(s)=histone H3;Note=Non-protein coding transcript.;Transcript_evidence=AK058285 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-013-D12;Oryzabase=15761;TENOR=Os03t0390600-03
Chr03	irgsp1_rep	exon	15647845	15648151	.	+	.	Parent=Os03t0390600-03
Chr03	irgsp1_rep	mRNA	15647131	15647825	.	-	.	ID=Os03t0390633-00;Name=Os03t0390633-00;Locus_id=Os03g0390633;Note=Hypothetical gene.;Transcript_evidence=BT018930 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0390633-00
Chr03	irgsp1_rep	five_prime_UTR	15647747	15647825	.	-	.	Parent=Os03t0390633-00
Chr03	irgsp1_rep	CDS	15647647	15647746	.	-	0	Parent=Os03t0390633-00
Chr03	irgsp1_rep	CDS	15647455	15647555	.	-	2	Parent=Os03t0390633-00
Chr03	irgsp1_rep	CDS	15647276	15647360	.	-	0	Parent=Os03t0390633-00
Chr03	irgsp1_rep	CDS	15647131	15647191	.	-	2	Parent=Os03t0390633-00
Chr03	irgsp1_rep	mRNA	15649060	15650571	.	-	.	ID=Os03t0390666-00;Name=Os03t0390666-00;Locus_id=Os03g0390666;Note=Non-protein coding transcript.;Transcript_evidence=BT086916 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0390666-00
Chr03	irgsp1_rep	exon	15650435	15650571	.	-	.	Parent=Os03t0390666-00
Chr03	irgsp1_rep	exon	15650000	15650126	.	-	.	Parent=Os03t0390666-00
Chr03	irgsp1_rep	exon	15649250	15649323	.	-	.	Parent=Os03t0390666-00
Chr03	irgsp1_rep	exon	15649060	15649134	.	-	.	Parent=Os03t0390666-00
Chr03	irgsp1_rep	mRNA	15648919	15652111	.	+	.	ID=Os03t0390700-01;Name=Os03t0390700-01;Locus_id=Os03g0390700;Note=Similar to Transthyretin-like protein.;Transcript_evidence=AK103600 (DDBJ%2C Best hit);ORF_evidence=B8AQM6 (UniProt);GO=Biological Process: transport (GO:0006810);InterPro=Transthyretin/hydroxyisourate hydrolase (IPR000895),Hydroxyisourate hydrolase (IPR014306),Bifunctional hydroxyisourate hydrolase/2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase (IPR017129),Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase (IPR018020),Transthyretin/hydroxyisourate hydrolase%2C superfamily (IPR023416),Transthyretin%2C thyroxine binding site (IPR023418);NIAS_FLcDNA=J033133F17;Expression=AK103600;TENOR=Os03t0390700-01;KEGG=Os03t0390700-01
Chr03	irgsp1_rep	five_prime_UTR	15648919	15648972	.	+	.	Parent=Os03t0390700-01
Chr03	irgsp1_rep	CDS	15648973	15649119	.	+	0	Parent=Os03t0390700-01
Chr03	irgsp1_rep	CDS	15649238	15649311	.	+	0	Parent=Os03t0390700-01
Chr03	irgsp1_rep	CDS	15649900	15649957	.	+	1	Parent=Os03t0390700-01
Chr03	irgsp1_rep	CDS	15650041	15650142	.	+	0	Parent=Os03t0390700-01
Chr03	irgsp1_rep	CDS	15650451	15650610	.	+	0	Parent=Os03t0390700-01
Chr03	irgsp1_rep	CDS	15651422	15651885	.	+	2	Parent=Os03t0390700-01
Chr03	irgsp1_rep	three_prime_UTR	15651886	15652111	.	+	.	Parent=Os03t0390700-01
Chr03	irgsp1_rep	mRNA	15658869	15661383	.	-	.	ID=Os03t0390900-01;Name=Os03t0390900-01;Locus_id=Os03g0390900;Note=Similar to OSIGBa0153E02-OSIGBa0093I20.13 protein.;Transcript_evidence=AK068299 (DDBJ%2C Best hit);ORF_evidence=Q01HR2 (UniProt);InterPro=Protein of unknown function DUF3411 (IPR021825);NIAS_FLcDNA=J013146H03;TENOR=Os03t0390900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	15661373	15661383	.	-	.	Parent=Os03t0390900-01
Chr03	irgsp1_rep	CDS	15660917	15661372	.	-	0	Parent=Os03t0390900-01
Chr03	irgsp1_rep	CDS	15660731	15660829	.	-	0	Parent=Os03t0390900-01
Chr03	irgsp1_rep	CDS	15660574	15660645	.	-	0	Parent=Os03t0390900-01
Chr03	irgsp1_rep	three_prime_UTR	15658869	15660573	.	-	.	Parent=Os03t0390900-01
Chr03	irgsp1_rep	mRNA	15661860	15665613	.	+	.	ID=Os03t0391000-01;Name=Os03t0391000-01;Locus_id=Os03g0391000;CGSNL Gene Symbol=ATG4A;CGSNL Gene Name=AUTOPHAGY ASSOCIATED GENE 4A;Oryzabase Gene Symbol Synonym(s)=OsATG4a%2C Atg4a;Oryzabase Gene Name Synonym(s)=autophagy 4a%2C AUTOPHAGY RELATED4a;Note=Similar to Cysteine protease ATG4A.;Transcript_evidence=AK242832 (DDBJ%2C Best hit);ORF_evidence=Q75KP8 (UniProt);InterPro=Peptidase C54 (IPR005078);NIAS_FLcDNA=J090067L13;Oryzabase=9637;TENOR=Os03t0391000-01;KEGG=Os03t0391000-01 (EC:3.4.22.-)
Chr03	irgsp1_rep	five_prime_UTR	15661860	15662000	.	+	.	Parent=Os03t0391000-01
Chr03	irgsp1_rep	five_prime_UTR	15662283	15662418	.	+	.	Parent=Os03t0391000-01
Chr03	irgsp1_rep	CDS	15662419	15662848	.	+	0	Parent=Os03t0391000-01
Chr03	irgsp1_rep	CDS	15662930	15663015	.	+	2	Parent=Os03t0391000-01
Chr03	irgsp1_rep	CDS	15663106	15663156	.	+	0	Parent=Os03t0391000-01
Chr03	irgsp1_rep	CDS	15663287	15663672	.	+	0	Parent=Os03t0391000-01
Chr03	irgsp1_rep	CDS	15664042	15664180	.	+	1	Parent=Os03t0391000-01
Chr03	irgsp1_rep	CDS	15664822	15664877	.	+	0	Parent=Os03t0391000-01
Chr03	irgsp1_rep	CDS	15664994	15665064	.	+	1	Parent=Os03t0391000-01
Chr03	irgsp1_rep	CDS	15665158	15665363	.	+	2	Parent=Os03t0391000-01
Chr03	irgsp1_rep	three_prime_UTR	15665364	15665613	.	+	.	Parent=Os03t0391000-01
Chr03	irgsp1_rep	mRNA	15668225	15671064	.	+	.	ID=Os03t0391100-00;Name=Os03t0391100-00;Locus_id=Os03g0391100;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=AK356557 (DDBJ);ORF_evidence=Q75KP7 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os03t0391100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	15668225	15669117	.	+	0	Parent=Os03t0391100-00
Chr03	irgsp1_rep	CDS	15670650	15671064	.	+	1	Parent=Os03t0391100-00
Chr03	irgsp1_rep	mRNA	15675471	15677773	.	-	.	ID=Os03t0391300-01;Name=Os03t0391300-01;Locus_id=Os03g0391300;Note=Similar to Phospholipase D alpha 1 (EC 3.1.4.4) (PLD alpha 1) (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1).;Transcript_evidence=AK109877 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-149-C05;Expression=AK109877;TENOR=Os03t0391300-01;KEGG=Os03t0391300-01 (EC:3.1.4.4)
Chr03	irgsp1_rep	five_prime_UTR	15677723	15677773	.	-	.	Parent=Os03t0391300-01
Chr03	irgsp1_rep	CDS	15675719	15677722	.	-	0	Parent=Os03t0391300-01
Chr03	irgsp1_rep	three_prime_UTR	15675471	15675718	.	-	.	Parent=Os03t0391300-01
Chr03	irgsp1_rep	mRNA	15676873	15678725	.	+	.	ID=Os03t0391400-01;Name=Os03t0391400-01;Locus_id=Os03g0391400;CGSNL Gene Symbol=PLDalpha6;CGSNL Gene Name=PHOSPHOLIPASE D alpha 6;Oryzabase Gene Symbol Synonym(s)=OsPLDalpha6%2C OsPLDeta1%2C OsPLDmu;Oryzabase Gene Name Synonym(s)=phospholipase D mu;Note=Similar to Phospholipase D nu-2 (Fragment).;Transcript_evidence=AK105821 (DDBJ%2C Best hit);ORF_evidence=B9F8T8 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Phospholipase D/Transphosphatidylase (IPR001736),Phospholipase D (IPR015679),Phospholipase D%2C C-terminal (IPR024632);NIAS_FLcDNA=001-203-D07;Oryzabase=8692;Expression=AK105821;TENOR=Os03t0391400-01;KEGG=Os03t0391400-01 (EC:3.1.4.4)
Chr03	irgsp1_rep	five_prime_UTR	15676873	15676873	.	+	.	Parent=Os03t0391400-01
Chr03	irgsp1_rep	CDS	15676874	15677699	.	+	0	Parent=Os03t0391400-01
Chr03	irgsp1_rep	CDS	15678139	15678629	.	+	2	Parent=Os03t0391400-01
Chr03	irgsp1_rep	three_prime_UTR	15678630	15678725	.	+	.	Parent=Os03t0391400-01
Chr03	irgsp1_rep	mRNA	15685589	15689245	.	-	.	ID=Os03t0391700-01;Name=Os03t0391700-01;Locus_id=Os03g0391700;RAP-DB Gene Symbol Synonym(s)=OsbHLH138;RAP-DB Gene Name Synonym(s)=basic helix-loop-helix protein 138;Oryzabase Gene Symbol Synonym(s)=OsbHLH138%2C bHLH138%2C OsPIF4%2C PIF4%2C OsSACL2%2C SACL2;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 138%2C PhytoChrome-interacting factor 4;Note=bHLH transcription factor%2C Regulation of thermosensitive male sterility;Transcript_evidence=AK065674;ORF_evidence=Q75KP4;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Helix-loop-helix DNA-binding domain superfamily (IPR036638),Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);NIAS_FLcDNA=J013036B10;Manual Curation=June 8%2C 2020;Literature_PMID=30778635;Oryzabase=15415;TENOR=Os03t0391700-01;Subcellular location=nucleus (GO:0005634)
Chr03	irgsp1_rep	five_prime_UTR	15689003	15689245	.	-	.	Parent=Os03t0391700-01
Chr03	irgsp1_rep	five_prime_UTR	15687658	15688036	.	-	.	Parent=Os03t0391700-01
Chr03	irgsp1_rep	five_prime_UTR	15687425	15687572	.	-	.	Parent=Os03t0391700-01
Chr03	irgsp1_rep	five_prime_UTR	15687306	15687329	.	-	.	Parent=Os03t0391700-01
Chr03	irgsp1_rep	CDS	15686358	15687305	.	-	0	Parent=Os03t0391700-01
Chr03	irgsp1_rep	three_prime_UTR	15685589	15686357	.	-	.	Parent=Os03t0391700-01
Chr03	irgsp1_rep	mRNA	15719191	15719702	.	+	.	ID=Os03t0391850-00;Name=Os03t0391850-00;Locus_id=Os03g0391850;Note=Non-protein coding transcript.;Transcript_evidence=EU950895 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0391850-00
Chr03	irgsp1_rep	exon	15719191	15719497	.	+	.	Parent=Os03t0391850-00
Chr03	irgsp1_rep	exon	15719595	15719702	.	+	.	Parent=Os03t0391850-00
Chr03	irgsp1_rep	mRNA	15730494	15732159	.	-	.	ID=Os03t0392000-00;Name=Os03t0392000-00;Locus_id=Os03g0392000;CGSNL Gene Symbol=CYCD2%3B3;CGSNL Gene Name=CYCLIN-D2-3;Oryzabase Gene Symbol Synonym(s)=CycD2%3B3%2C CycD2%3Bos%3B3%2C Orysa%3BCycD2%3B3%2C Orysa%3BCYCD2%3B3;Oryzabase Gene Name Synonym(s)=D-type cyclin 2%3B3;Note=Cyclin%2C N-terminal domain containing protein.;Transcript_evidence=EU961662 (DDBJ);ORF_evidence=Q10K98 (UniProt);InterPro=Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763);Oryzabase=13266;TENOR=Os03t0392000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	15731821	15732159	.	-	0	Parent=Os03t0392000-00
Chr03	irgsp1_rep	CDS	15731320	15731406	.	-	0	Parent=Os03t0392000-00
Chr03	irgsp1_rep	CDS	15731063	15731161	.	-	0	Parent=Os03t0392000-00
Chr03	irgsp1_rep	CDS	15730739	15730942	.	-	0	Parent=Os03t0392000-00
Chr03	irgsp1_rep	CDS	15730615	15730626	.	-	0	Parent=Os03t0392000-00
Chr03	irgsp1_rep	three_prime_UTR	15730494	15730614	.	-	.	Parent=Os03t0392000-00
Chr03	irgsp1_rep	mRNA	15735544	15739133	.	-	.	ID=Os03t0392050-01;Name=Os03t0392050-01;Locus_id=Os03g0392050;Note=Oligosaccaryltransferase domain containing protein.;Transcript_evidence=AK241316 (DDBJ%2C Best hit);ORF_evidence=NP_001173454.1 (RefSeq);InterPro=Oligosaccaryltransferase (IPR018943);NIAS_FLcDNA=J065142B17;TENOR=Os03t0392050-01;KEGG=Os03t0392050-01
Chr03	irgsp1_rep	five_prime_UTR	15739033	15739133	.	-	.	Parent=Os03t0392050-01
Chr03	irgsp1_rep	CDS	15739030	15739032	.	-	0	Parent=Os03t0392050-01
Chr03	irgsp1_rep	CDS	15735750	15735863	.	-	0	Parent=Os03t0392050-01
Chr03	irgsp1_rep	three_prime_UTR	15735544	15735749	.	-	.	Parent=Os03t0392050-01
Chr03	irgsp1_rep	mRNA	15747273	15751003	.	-	.	ID=Os03t0392250-01;Name=Os03t0392250-01;Locus_id=Os03g0392250;Note=Hypothetical gene.;Transcript_evidence=AK288273 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090017B14;TENOR=Os03t0392250-01;KEGG=Os03t0392250-01
Chr03	irgsp1_rep	five_prime_UTR	15747675	15751003	.	-	.	Parent=Os03t0392250-01
Chr03	irgsp1_rep	CDS	15747273	15747674	.	-	0	Parent=Os03t0392250-01
Chr03	irgsp1_rep	mRNA	15747274	15751819	.	+	.	ID=Os03t0392300-01;Name=Os03t0392300-01;Locus_id=Os03g0392300;CGSNL Gene Symbol=GB1A;CGSNL Gene Name=GTP-BINDING PROTEIN 1A;Oryzabase Gene Symbol Synonym(s)=OsGB1a%2C GB1a;Oryzabase Gene Name Synonym(s)=GTP-binding protein 1a;Note=Similar to GTP-binding protein-like.;Transcript_evidence=AK071779 (DDBJ%2C Best hit);ORF_evidence=B4FF78 (UniProt);GO=Biological Process: small GTPase mediated signal transduction (GO:0007264),Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C ARF/SAR type (IPR006689),Small GTPase superfamily%2C ARF type (IPR024156);NIAS_FLcDNA=J023110F23;Oryzabase=21013;Expression=AK071779;TENOR=Os03t0392300-01;KEGG=Os03t0392300-01
Chr03	irgsp1_rep	five_prime_UTR	15747274	15747467	.	+	.	Parent=Os03t0392300-01
Chr03	irgsp1_rep	five_prime_UTR	15748159	15748225	.	+	.	Parent=Os03t0392300-01
Chr03	irgsp1_rep	CDS	15748226	15748318	.	+	0	Parent=Os03t0392300-01
Chr03	irgsp1_rep	CDS	15748912	15749052	.	+	0	Parent=Os03t0392300-01
Chr03	irgsp1_rep	CDS	15749667	15749775	.	+	0	Parent=Os03t0392300-01
Chr03	irgsp1_rep	CDS	15749880	15749941	.	+	2	Parent=Os03t0392300-01
Chr03	irgsp1_rep	CDS	15750986	15751089	.	+	0	Parent=Os03t0392300-01
Chr03	irgsp1_rep	CDS	15751340	15751442	.	+	1	Parent=Os03t0392300-01
Chr03	irgsp1_rep	three_prime_UTR	15751443	15751819	.	+	.	Parent=Os03t0392300-01
Chr03	irgsp1_rep	mRNA	15754440	15756106	.	-	.	ID=Os03t0392400-01;Name=Os03t0392400-01;Locus_id=Os03g0392400;Note=Heat shock protein DnaJ%2C N-terminal domain containing protein.;Transcript_evidence=AK106027 (DDBJ%2C Best hit),AK073726 (DDBJ%2C Best hit);ORF_evidence=B6TYB9 (UniProt);GO=Molecular Function: heat shock protein binding (GO:0031072);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623);NIAS_FLcDNA=001-206-C11,J033058M13;Expression=AK106027;TENOR=Os03t0392400-01;KEGG=Os03t0392400-01
Chr03	irgsp1_rep	five_prime_UTR	15756057	15756106	.	-	.	Parent=Os03t0392400-01
Chr03	irgsp1_rep	CDS	15754839	15756056	.	-	0	Parent=Os03t0392400-01
Chr03	irgsp1_rep	three_prime_UTR	15754440	15754838	.	-	.	Parent=Os03t0392400-01
Chr03	irgsp1_rep	mRNA	15763550	15767310	.	-	.	ID=Os03t0392600-01;Name=Os03t0392600-01;Locus_id=Os03g0392600;CGSNL Gene Symbol=SCP14;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 14;Oryzabase Gene Symbol Synonym(s)=OsSCP14;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 14;Note=Peptidase S10%2C serine carboxypeptidase family protein.;Transcript_evidence=AK103605 (DDBJ%2C Best hit);ORF_evidence=Q10K92 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=J033133H04;Oryzabase=19197;Expression=AK103605;TENOR=Os03t0392600-01;KEGG=Os03t0392600-01
Chr03	irgsp1_rep	five_prime_UTR	15767304	15767310	.	-	.	Parent=Os03t0392600-01
Chr03	irgsp1_rep	CDS	15767129	15767303	.	-	0	Parent=Os03t0392600-01
Chr03	irgsp1_rep	CDS	15766924	15767021	.	-	2	Parent=Os03t0392600-01
Chr03	irgsp1_rep	CDS	15766729	15766836	.	-	0	Parent=Os03t0392600-01
Chr03	irgsp1_rep	CDS	15766342	15766629	.	-	0	Parent=Os03t0392600-01
Chr03	irgsp1_rep	CDS	15766192	15766259	.	-	0	Parent=Os03t0392600-01
Chr03	irgsp1_rep	CDS	15765957	15766062	.	-	1	Parent=Os03t0392600-01
Chr03	irgsp1_rep	CDS	15765684	15765868	.	-	0	Parent=Os03t0392600-01
Chr03	irgsp1_rep	CDS	15765281	15765350	.	-	1	Parent=Os03t0392600-01
Chr03	irgsp1_rep	CDS	15765107	15765157	.	-	0	Parent=Os03t0392600-01
Chr03	irgsp1_rep	CDS	15764143	15764195	.	-	0	Parent=Os03t0392600-01
Chr03	irgsp1_rep	CDS	15763917	15764049	.	-	1	Parent=Os03t0392600-01
Chr03	irgsp1_rep	CDS	15763727	15763804	.	-	0	Parent=Os03t0392600-01
Chr03	irgsp1_rep	three_prime_UTR	15763550	15763726	.	-	.	Parent=Os03t0392600-01
Chr03	irgsp1_rep	mRNA	15765268	15766076	.	+	.	ID=Os03t0392833-00;Name=Os03t0392833-00;Locus_id=Os03g0392833;Note=Hypothetical protein.;Transcript_evidence=EU949881 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0392833-00
Chr03	irgsp1_rep	five_prime_UTR	15765268	15765389	.	+	.	Parent=Os03t0392833-00
Chr03	irgsp1_rep	CDS	15765390	15765396	.	+	0	Parent=Os03t0392833-00
Chr03	irgsp1_rep	CDS	15765667	15765872	.	+	2	Parent=Os03t0392833-00
Chr03	irgsp1_rep	three_prime_UTR	15765873	15766076	.	+	.	Parent=Os03t0392833-00
Chr03	irgsp1_rep	mRNA	15795756	15796260	.	-	.	ID=Os03t0393100-00;Name=Os03t0393100-00;Locus_id=Os03g0393100;CGSNL Gene Symbol=SCP16;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 16;Oryzabase Gene Symbol Synonym(s)=OsSCP16;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 16;Note=Similar to retinoid-inducible serine carboxypeptidase.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001148149.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563);Oryzabase=19199;TENOR=Os03t0393100-00
Chr03	irgsp1_rep	CDS	15796210	15796260	.	-	0	Parent=Os03t0393100-00
Chr03	irgsp1_rep	CDS	15795990	15796112	.	-	0	Parent=Os03t0393100-00
Chr03	irgsp1_rep	CDS	15795756	15795884	.	-	0	Parent=Os03t0393100-00
Chr03	irgsp1_rep	mRNA	15791600	15795702	.	-	.	ID=Os03t0393300-00;Name=Os03t0393300-00;Locus_id=Os03g0393300;Note=Peptidase S10%2C serine carboxypeptidase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q84QY0 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563);TENOR=Os03t0393300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	15795642	15795702	.	-	0	Parent=Os03t0393300-00
Chr03	irgsp1_rep	CDS	15792692	15792735	.	-	2	Parent=Os03t0393300-00
Chr03	irgsp1_rep	CDS	15792510	15792610	.	-	0	Parent=Os03t0393300-00
Chr03	irgsp1_rep	CDS	15792293	15792398	.	-	1	Parent=Os03t0393300-00
Chr03	irgsp1_rep	CDS	15791928	15792130	.	-	0	Parent=Os03t0393300-00
Chr03	irgsp1_rep	CDS	15791759	15791828	.	-	1	Parent=Os03t0393300-00
Chr03	irgsp1_rep	CDS	15791600	15791665	.	-	0	Parent=Os03t0393300-00
Chr03	irgsp1_rep	mRNA	15799443	15799667	.	-	.	ID=Os03t0393350-00;Name=Os03t0393350-00;Locus_id=Os03g0393350;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=A3AIQ6 (UniProt);TENOR=Os03t0393350-00;KEGG=Os03t0393350-00
Chr03	irgsp1_rep	CDS	15799443	15799667	.	-	0	Parent=Os03t0393350-00
Chr03	irgsp1_rep	mRNA	15801586	15801968	.	-	.	ID=Os03t0393375-00;Name=Os03t0393375-00;Locus_id=Os03g0393375;CGSNL Gene Symbol=SCP17;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 17;Oryzabase Gene Symbol Synonym(s)=OsSCP17;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 17;Note=Similar to Serine carboxypeptidase family protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10K92 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563);Oryzabase=19200;TENOR=Os03t0393375-00
Chr03	irgsp1_rep	CDS	15801791	15801968	.	-	0	Parent=Os03t0393375-00
Chr03	irgsp1_rep	CDS	15801586	15801698	.	-	2	Parent=Os03t0393375-00
Chr03	irgsp1_rep	mRNA	15824108	15829103	.	-	.	ID=Os03t0393700-01;Name=Os03t0393700-01;Locus_id=Os03g0393700;CGSNL Gene Symbol=SCP18;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 18;Oryzabase Gene Symbol Synonym(s)=OsSCP18;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 18;Note=Similar to Serine carboxypeptidase family protein%2C expressed.;Transcript_evidence=AK101332 (DDBJ%2C Best hit);ORF_evidence=Q10K92 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=J033034H21;Oryzabase=19201;TENOR=Os03t0393700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	15829071	15829103	.	-	.	Parent=Os03t0393700-01
Chr03	irgsp1_rep	CDS	15828914	15829070	.	-	0	Parent=Os03t0393700-01
Chr03	irgsp1_rep	CDS	15828732	15828826	.	-	2	Parent=Os03t0393700-01
Chr03	irgsp1_rep	CDS	15828535	15828642	.	-	0	Parent=Os03t0393700-01
Chr03	irgsp1_rep	CDS	15828143	15828430	.	-	0	Parent=Os03t0393700-01
Chr03	irgsp1_rep	CDS	15827968	15828035	.	-	0	Parent=Os03t0393700-01
Chr03	irgsp1_rep	CDS	15827747	15827852	.	-	1	Parent=Os03t0393700-01
Chr03	irgsp1_rep	CDS	15826291	15826505	.	-	0	Parent=Os03t0393700-01
Chr03	irgsp1_rep	CDS	15826072	15826141	.	-	1	Parent=Os03t0393700-01
Chr03	irgsp1_rep	CDS	15825922	15825972	.	-	0	Parent=Os03t0393700-01
Chr03	irgsp1_rep	CDS	15824959	15825011	.	-	0	Parent=Os03t0393700-01
Chr03	irgsp1_rep	CDS	15824741	15824873	.	-	1	Parent=Os03t0393700-01
Chr03	irgsp1_rep	CDS	15824212	15824280	.	-	0	Parent=Os03t0393700-01
Chr03	irgsp1_rep	three_prime_UTR	15824108	15824211	.	-	.	Parent=Os03t0393700-01
Chr03	irgsp1_rep	mRNA	15824108	15829101	.	-	.	ID=Os03t0393700-02;Name=Os03t0393700-02;Locus_id=Os03g0393700;CGSNL Gene Symbol=SCP18;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 18;Oryzabase Gene Symbol Synonym(s)=OsSCP18;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 18;Note=Similar to Serine carboxypeptidase family protein%2C expressed.;Transcript_evidence=AK119753 (DDBJ%2C Best hit);ORF_evidence=Q10K92 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563);NIAS_FLcDNA=002-167-E02;Oryzabase=19201;TENOR=Os03t0393700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	15829071	15829101	.	-	.	Parent=Os03t0393700-02
Chr03	irgsp1_rep	CDS	15828914	15829070	.	-	0	Parent=Os03t0393700-02
Chr03	irgsp1_rep	CDS	15828732	15828826	.	-	2	Parent=Os03t0393700-02
Chr03	irgsp1_rep	CDS	15828460	15828642	.	-	0	Parent=Os03t0393700-02
Chr03	irgsp1_rep	three_prime_UTR	15828143	15828459	.	-	.	Parent=Os03t0393700-02
Chr03	irgsp1_rep	three_prime_UTR	15827968	15828035	.	-	.	Parent=Os03t0393700-02
Chr03	irgsp1_rep	three_prime_UTR	15827747	15827852	.	-	.	Parent=Os03t0393700-02
Chr03	irgsp1_rep	three_prime_UTR	15825922	15826505	.	-	.	Parent=Os03t0393700-02
Chr03	irgsp1_rep	three_prime_UTR	15824959	15825011	.	-	.	Parent=Os03t0393700-02
Chr03	irgsp1_rep	three_prime_UTR	15824108	15824873	.	-	.	Parent=Os03t0393700-02
Chr03	irgsp1_rep	mRNA	15824108	15825179	.	-	.	ID=Os03t0393700-03;Name=Os03t0393700-03;Locus_id=Os03g0393700;CGSNL Gene Symbol=SCP18;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 18;Oryzabase Gene Symbol Synonym(s)=OsSCP18;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 18;Note=Similar to Serine carboxypeptidase family protein%2C expressed.;Transcript_evidence=AK058801 (DDBJ%2C Best hit);ORF_evidence=Q10K92 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563);NIAS_FLcDNA=001-003-A09;Oryzabase=19201;Expression=AK058801;TENOR=Os03t0393700-03;KEGG=Os03t0393700-03 (EC:3.4.16.-)
Chr03	irgsp1_rep	five_prime_UTR	15825072	15825179	.	-	.	Parent=Os03t0393700-03
Chr03	irgsp1_rep	CDS	15824959	15825071	.	-	0	Parent=Os03t0393700-03
Chr03	irgsp1_rep	CDS	15824741	15824873	.	-	1	Parent=Os03t0393700-03
Chr03	irgsp1_rep	CDS	15824212	15824280	.	-	0	Parent=Os03t0393700-03
Chr03	irgsp1_rep	three_prime_UTR	15824108	15824211	.	-	.	Parent=Os03t0393700-03
Chr03	irgsp1_rep	mRNA	15825935	15827859	.	+	.	ID=Os03t0393801-00;Name=Os03t0393801-00;Locus_id=Os03g0393801;Note=Non-protein coding transcript.;Transcript_evidence=EU949881 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0393801-00
Chr03	irgsp1_rep	exon	15825935	15826198	.	+	.	Parent=Os03t0393801-00
Chr03	irgsp1_rep	exon	15826271	15826567	.	+	.	Parent=Os03t0393801-00
Chr03	irgsp1_rep	exon	15827714	15827859	.	+	.	Parent=Os03t0393801-00
Chr03	irgsp1_rep	mRNA	15836613	15838422	.	+	.	ID=Os03t0393900-01;Name=Os03t0393900-01;Locus_id=Os03g0393900;RAP-DB Gene Symbol Synonym(s)=OsMATL%2C OspPLAII&phi%3B%2C OspPLAIIphi%2C OsPLP1%2C PLP1%2C OspPLAIIbeta;RAP-DB Gene Name Synonym(s)=MATRILINEAL%2C Patatin-like protein 1%2C Patatin-related phospholipase A II beta;Oryzabase Gene Symbol Synonym(s)=OspPLAIIbeta%2C pPLAIIbeta%2C OspPLAIIphi%2C pPLAIIphi%2C NLD%2C PLP1%2C OspPLAIIphi/PLP1%2C OsMATL%2C MATL;Oryzabase Gene Name Synonym(s)=Patatin-related phospholipase A II beta%2C MATRILINEAL%2C PHOSPHOLIPASE A1%2C NOT LIKE DAD;Note=Pollen-specific phospholipase%2C Patatin like phospholipase A%2C Pollen viability;Transcript_evidence=AK069809;ORF_evidence=Q84QY3;GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: metabolic process (GO:0008152);InterPro=Acyl transferase/acyl hydrolase/lysophospholipase (IPR016035),Patatin-like phospholipase domain (IPR002641);NIAS_FLcDNA=J023030J03;Manual Curation=July 17%2C 2018;Literature_PMID=29988153,26290597,22363522;Oryzabase=19861;Expression=AK069809;TENOR=Os03t0393900-01;KEGG=Os03t0393900-01
Chr03	irgsp1_rep	five_prime_UTR	15836613	15836690	.	+	.	Parent=Os03t0393900-01
Chr03	irgsp1_rep	CDS	15836691	15837055	.	+	0	Parent=Os03t0393900-01
Chr03	irgsp1_rep	CDS	15837148	15837328	.	+	1	Parent=Os03t0393900-01
Chr03	irgsp1_rep	CDS	15837415	15837579	.	+	0	Parent=Os03t0393900-01
Chr03	irgsp1_rep	CDS	15837687	15838274	.	+	0	Parent=Os03t0393900-01
Chr03	irgsp1_rep	three_prime_UTR	15838275	15838422	.	+	.	Parent=Os03t0393900-01
Chr03	irgsp1_rep	mRNA	15847635	15850101	.	-	.	ID=Os03t0394001-01;Name=Os03t0394001-01;Locus_id=Os03g0394001;Note=Non-protein coding transcript.;Transcript_evidence=AK288850 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090075H22;TENOR=Os03t0394001-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	exon	15847635	15850101	.	-	.	Parent=Os03t0394001-01
Chr03	irgsp1_rep	mRNA	15908038	15912222	.	-	.	ID=Os03t0394900-01;Name=Os03t0394900-01;Locus_id=Os03g0394900;Note=Similar to nodulation protein-related.;Transcript_evidence=AK103693 (DDBJ%2C Best hit),AK064346 (DDBJ%2C Best hit);ORF_evidence=NP_190631.2 (RefSeq);NIAS_FLcDNA=J033136I20,002-107-H11;TENOR=Os03t0394900-01
Chr03	irgsp1_rep	five_prime_UTR	15911906	15912222	.	-	.	Parent=Os03t0394900-01
Chr03	irgsp1_rep	CDS	15911822	15911905	.	-	0	Parent=Os03t0394900-01
Chr03	irgsp1_rep	CDS	15910402	15910637	.	-	0	Parent=Os03t0394900-01
Chr03	irgsp1_rep	CDS	15910064	15910322	.	-	1	Parent=Os03t0394900-01
Chr03	irgsp1_rep	CDS	15908813	15908992	.	-	0	Parent=Os03t0394900-01
Chr03	irgsp1_rep	CDS	15908573	15908728	.	-	0	Parent=Os03t0394900-01
Chr03	irgsp1_rep	CDS	15908306	15908479	.	-	0	Parent=Os03t0394900-01
Chr03	irgsp1_rep	three_prime_UTR	15908038	15908305	.	-	.	Parent=Os03t0394900-01
Chr03	irgsp1_rep	mRNA	15908040	15912221	.	-	.	ID=Os03t0394900-02;Name=Os03t0394900-02;Locus_id=Os03g0394900;Note=Similar to predicted protein.;Transcript_evidence=AK073041 (DDBJ%2C Best hit);ORF_evidence=NP_190631.2 (RefSeq);NIAS_FLcDNA=J023149A16;Expression=AK073041;TENOR=Os03t0394900-02;KEGG=Os03t0394900-02
Chr03	irgsp1_rep	five_prime_UTR	15911906	15912221	.	-	.	Parent=Os03t0394900-02
Chr03	irgsp1_rep	CDS	15911822	15911905	.	-	0	Parent=Os03t0394900-02
Chr03	irgsp1_rep	CDS	15910402	15910637	.	-	0	Parent=Os03t0394900-02
Chr03	irgsp1_rep	CDS	15909971	15910322	.	-	1	Parent=Os03t0394900-02
Chr03	irgsp1_rep	three_prime_UTR	15908813	15909970	.	-	.	Parent=Os03t0394900-02
Chr03	irgsp1_rep	three_prime_UTR	15908573	15908728	.	-	.	Parent=Os03t0394900-02
Chr03	irgsp1_rep	three_prime_UTR	15908040	15908479	.	-	.	Parent=Os03t0394900-02
Chr03	irgsp1_rep	mRNA	15924075	15927434	.	-	.	ID=Os03t0395000-01;Name=Os03t0395000-01;Locus_id=Os03g0395000;RAP-DB Gene Symbol Synonym(s)=OsHO2%2C HO2%2C YLC2;RAP-DB Gene Name Synonym(s)=heme oxgenase 2%2C heme oxygenase-2%2C Young Leaf Chlorosis 2;CGSNL Gene Symbol=YLC2;CGSNL Gene Name=YOUNG LEAF CHLOROSIS 2;Oryzabase Gene Symbol Synonym(s)=OsHO2%2C HO2%2C OsHO-2%2C HO-2;Oryzabase Gene Name Synonym(s)=heme oxgenase 2%2C heme oxygenase-2%2C Young Leaf Chlorosis 2;Note=Stroma-localized heme oxygenase 2%2C Tetrapyrrole biosynthesis;Transcript_evidence=AK073283;ORF_evidence=Q10K62;GO=Biological Process: heme oxidation (GO:0006788),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: heme oxygenase (decyclizing) activity (GO:0004392);InterPro=Haem oxygenase (decyclizing)%2C plant (IPR016951),Haem oxygenase-like (IPR016053),Haem oxygenase-like%2C multi-helical (IPR016084);NIAS_FLcDNA=J033029D12;Manual Curation=December 5%2C 2016;Literature_PMID=25037719;Oryzabase=12121;Expression=AK073283;TENOR=Os03t0395000-01;KEGG=Os03t0395000-01
Chr03	irgsp1_rep	five_prime_UTR	15927393	15927434	.	-	.	Parent=Os03t0395000-01
Chr03	irgsp1_rep	CDS	15926825	15927392	.	-	0	Parent=Os03t0395000-01
Chr03	irgsp1_rep	CDS	15925769	15925992	.	-	2	Parent=Os03t0395000-01
Chr03	irgsp1_rep	CDS	15924818	15924925	.	-	0	Parent=Os03t0395000-01
Chr03	irgsp1_rep	CDS	15924613	15924705	.	-	0	Parent=Os03t0395000-01
Chr03	irgsp1_rep	three_prime_UTR	15924075	15924612	.	-	.	Parent=Os03t0395000-01
Chr03	irgsp1_rep	mRNA	15924079	15925915	.	-	.	ID=Os03t0395000-02;Name=Os03t0395000-02;Locus_id=Os03g0395000;CGSNL Gene Symbol=YLC2;CGSNL Gene Name=YOUNG LEAF CHLOROSIS 2;Oryzabase Gene Symbol Synonym(s)=OsHO2%2C HO2%2C OsHO-2%2C HO-2;Oryzabase Gene Name Synonym(s)=heme oxgenase 2%2C heme oxygenase-2%2C Young Leaf Chlorosis 2;Note=Similar to Heme oxygenase 2 (Fragment).;Transcript_evidence=AK061587 (DDBJ%2C Best hit);ORF_evidence=Q94FW8 (UniProt);GO=Biological Process: heme oxidation (GO:0006788),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: heme oxygenase (decyclizing) activity (GO:0004392);InterPro=Haem oxygenase (IPR002051),Haem oxygenase-like%2C multi-helical (IPR016084);NIAS_FLcDNA=001-020-F06;Oryzabase=12121;Expression=AK061587;TENOR=Os03t0395000-02;KEGG=Os03t0395000-02
Chr03	irgsp1_rep	CDS	15925769	15925915	.	-	0	Parent=Os03t0395000-02
Chr03	irgsp1_rep	CDS	15924818	15924925	.	-	0	Parent=Os03t0395000-02
Chr03	irgsp1_rep	CDS	15924613	15924705	.	-	0	Parent=Os03t0395000-02
Chr03	irgsp1_rep	three_prime_UTR	15924079	15924612	.	-	.	Parent=Os03t0395000-02
Chr03	irgsp1_rep	mRNA	15932652	15936773	.	+	.	ID=Os03t0395100-01;Name=Os03t0395100-01;Locus_id=Os03g0395100;Oryzabase Gene Symbol Synonym(s)=OsPP53;Oryzabase Gene Name Synonym(s)=Protein phosphatase 53;Note=Protein phosphatase 2C domain containing protein.;Transcript_evidence=AK242576 (DDBJ%2C Best hit);ORF_evidence=NP_001152457.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J090009A15;Oryzabase=18639;TENOR=Os03t0395100-01;KEGG=Os03t0395100-01
Chr03	irgsp1_rep	five_prime_UTR	15932652	15933007	.	+	.	Parent=Os03t0395100-01
Chr03	irgsp1_rep	CDS	15933008	15933247	.	+	0	Parent=Os03t0395100-01
Chr03	irgsp1_rep	CDS	15933985	15934156	.	+	0	Parent=Os03t0395100-01
Chr03	irgsp1_rep	CDS	15934338	15934491	.	+	2	Parent=Os03t0395100-01
Chr03	irgsp1_rep	CDS	15934569	15934632	.	+	1	Parent=Os03t0395100-01
Chr03	irgsp1_rep	CDS	15934815	15934922	.	+	0	Parent=Os03t0395100-01
Chr03	irgsp1_rep	CDS	15935099	15935224	.	+	0	Parent=Os03t0395100-01
Chr03	irgsp1_rep	CDS	15935319	15935551	.	+	0	Parent=Os03t0395100-01
Chr03	irgsp1_rep	CDS	15935847	15936049	.	+	1	Parent=Os03t0395100-01
Chr03	irgsp1_rep	CDS	15936134	15936168	.	+	2	Parent=Os03t0395100-01
Chr03	irgsp1_rep	three_prime_UTR	15936169	15936773	.	+	.	Parent=Os03t0395100-01
Chr03	irgsp1_rep	mRNA	15933016	15936037	.	-	.	ID=Os03t0395150-00;Name=Os03t0395150-00;Locus_id=Os03g0395150;Note=Non-protein coding transcript.;Transcript_evidence=BT085317 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0395150-00
Chr03	irgsp1_rep	exon	15935837	15936037	.	-	.	Parent=Os03t0395150-00
Chr03	irgsp1_rep	exon	15935297	15935540	.	-	.	Parent=Os03t0395150-00
Chr03	irgsp1_rep	exon	15935118	15935204	.	-	.	Parent=Os03t0395150-00
Chr03	irgsp1_rep	exon	15934808	15934941	.	-	.	Parent=Os03t0395150-00
Chr03	irgsp1_rep	exon	15934551	15934627	.	-	.	Parent=Os03t0395150-00
Chr03	irgsp1_rep	exon	15934354	15934471	.	-	.	Parent=Os03t0395150-00
Chr03	irgsp1_rep	exon	15933936	15934170	.	-	.	Parent=Os03t0395150-00
Chr03	irgsp1_rep	exon	15933016	15933153	.	-	.	Parent=Os03t0395150-00
Chr03	irgsp1_rep	mRNA	15937303	15937584	.	-	.	ID=Os03t0395200-00;Name=Os03t0395200-00;Locus_id=Os03g0395200;Note=EF-hand-like domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q94LH2 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249);TENOR=Os03t0395200-00
Chr03	irgsp1_rep	CDS	15937303	15937584	.	-	0	Parent=Os03t0395200-00
Chr03	irgsp1_rep	mRNA	15939151	15943342	.	-	.	ID=Os03t0395300-01;Name=Os03t0395300-01;Locus_id=Os03g0395300;Note=Protein of unknown function DUF827%2C plant family protein.;Transcript_evidence=AK100564 (DDBJ%2C Best hit);ORF_evidence=A2XHM1 (UniProt);InterPro=Protein of unknown function DUF827%2C plant (IPR008545);NIAS_FLcDNA=J023104J05;Expression=AK100564;TENOR=Os03t0395300-01;KEGG=Os03t0395300-01
Chr03	irgsp1_rep	five_prime_UTR	15943268	15943342	.	-	.	Parent=Os03t0395300-01
Chr03	irgsp1_rep	five_prime_UTR	15941994	15942091	.	-	.	Parent=Os03t0395300-01
Chr03	irgsp1_rep	CDS	15941472	15941993	.	-	0	Parent=Os03t0395300-01
Chr03	irgsp1_rep	CDS	15939438	15941246	.	-	0	Parent=Os03t0395300-01
Chr03	irgsp1_rep	three_prime_UTR	15939151	15939437	.	-	.	Parent=Os03t0395300-01
Chr03	irgsp1_rep	mRNA	15961594	15966591	.	+	.	ID=Os03t0395600-01;Name=Os03t0395600-01;Locus_id=Os03g0395600;Note=Conserved hypothetical protein.;Transcript_evidence=AK063311 (DDBJ%2C Best hit);ORF_evidence=Q10K57 (UniProt);NIAS_FLcDNA=001-113-G03;Expression=AK063311;TENOR=Os03t0395600-01;KEGG=Os03t0395600-01
Chr03	irgsp1_rep	five_prime_UTR	15961594	15961595	.	+	.	Parent=Os03t0395600-01
Chr03	irgsp1_rep	CDS	15961596	15961837	.	+	0	Parent=Os03t0395600-01
Chr03	irgsp1_rep	CDS	15961912	15962053	.	+	1	Parent=Os03t0395600-01
Chr03	irgsp1_rep	CDS	15963371	15963554	.	+	0	Parent=Os03t0395600-01
Chr03	irgsp1_rep	CDS	15963631	15963978	.	+	2	Parent=Os03t0395600-01
Chr03	irgsp1_rep	CDS	15964065	15964732	.	+	2	Parent=Os03t0395600-01
Chr03	irgsp1_rep	CDS	15965490	15966182	.	+	0	Parent=Os03t0395600-01
Chr03	irgsp1_rep	three_prime_UTR	15966183	15966591	.	+	.	Parent=Os03t0395600-01
Chr03	irgsp1_rep	mRNA	15968091	15969803	.	-	.	ID=Os03t0395700-01;Name=Os03t0395700-01;Locus_id=Os03g0395700;Note=Conserved hypothetical protein.;Transcript_evidence=AK120906 (DDBJ%2C Best hit);ORF_evidence=Q94LG8 (UniProt);NIAS_FLcDNA=J023031H21;TENOR=Os03t0395700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	15969587	15969803	.	-	.	Parent=Os03t0395700-01
Chr03	irgsp1_rep	CDS	15968987	15969586	.	-	0	Parent=Os03t0395700-01
Chr03	irgsp1_rep	three_prime_UTR	15968091	15968986	.	-	.	Parent=Os03t0395700-01
Chr03	irgsp1_rep	mRNA	15967010	15969756	.	-	.	ID=Os03t0395700-02;Name=Os03t0395700-02;Locus_id=Os03g0395700;Note=Conserved hypothetical protein.;Transcript_evidence=AK120483 (DDBJ%2C Best hit);ORF_evidence=B9F8V2 (UniProt);NIAS_FLcDNA=J013112K02;TENOR=Os03t0395700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	15967886	15969756	.	-	.	Parent=Os03t0395700-02
Chr03	irgsp1_rep	CDS	15967700	15967885	.	-	0	Parent=Os03t0395700-02
Chr03	irgsp1_rep	CDS	15967473	15967607	.	-	0	Parent=Os03t0395700-02
Chr03	irgsp1_rep	three_prime_UTR	15967010	15967472	.	-	.	Parent=Os03t0395700-02
Chr03	irgsp1_rep	mRNA	15968994	15970303	.	+	.	ID=Os03t0395801-01;Name=Os03t0395801-01;Locus_id=Os03g0395801;Note=Conserved hypothetical protein.;Transcript_evidence=AK243619 (DDBJ%2C Best hit);ORF_evidence=B9FHU8 (UniProt);NIAS_FLcDNA=J100085P11;TENOR=Os03t0395801-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	15968994	15969034	.	+	.	Parent=Os03t0395801-01
Chr03	irgsp1_rep	CDS	15969035	15969253	.	+	0	Parent=Os03t0395801-01
Chr03	irgsp1_rep	three_prime_UTR	15969254	15970303	.	+	.	Parent=Os03t0395801-01
Chr03	irgsp1_rep	mRNA	15986414	15991291	.	+	.	ID=Os03t0395900-01;Name=Os03t0395900-01;Locus_id=Os03g0395900;Note=Hypothetical conserved gene.;Transcript_evidence=AK120654 (DDBJ%2C Best hit);ORF_evidence=Q94LG7 (UniProt);InterPro=Splicing factor%2C suppressor of white apricot (IPR019147);NIAS_FLcDNA=J013157J23;Expression=AK120654;TENOR=Os03t0395900-01;KEGG=Os03t0395900-01
Chr03	irgsp1_rep	five_prime_UTR	15986414	15986545	.	+	.	Parent=Os03t0395900-01
Chr03	irgsp1_rep	CDS	15986546	15986742	.	+	0	Parent=Os03t0395900-01
Chr03	irgsp1_rep	CDS	15987973	15988011	.	+	1	Parent=Os03t0395900-01
Chr03	irgsp1_rep	CDS	15988079	15988227	.	+	1	Parent=Os03t0395900-01
Chr03	irgsp1_rep	CDS	15988432	15988507	.	+	2	Parent=Os03t0395900-01
Chr03	irgsp1_rep	CDS	15990148	15990442	.	+	1	Parent=Os03t0395900-01
Chr03	irgsp1_rep	CDS	15990518	15990624	.	+	0	Parent=Os03t0395900-01
Chr03	irgsp1_rep	CDS	15990724	15990771	.	+	1	Parent=Os03t0395900-01
Chr03	irgsp1_rep	CDS	15990850	15991144	.	+	1	Parent=Os03t0395900-01
Chr03	irgsp1_rep	three_prime_UTR	15991145	15991291	.	+	.	Parent=Os03t0395900-01
Chr03	irgsp1_rep	mRNA	15986448	15992831	.	+	.	ID=Os03t0395900-02;Name=Os03t0395900-02;Locus_id=Os03g0395900;Note=Splicing factor%2C suppressor of white apricot domain containing protein.;Transcript_evidence=AK102573 (DDBJ%2C Best hit),AK119602 (DDBJ%2C Best hit);ORF_evidence=Q94LG7 (UniProt);InterPro=Splicing factor%2C suppressor of white apricot (IPR019147);NIAS_FLcDNA=J033097M22,002-117-E07;TENOR=Os03t0395900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	15986448	15986545	.	+	.	Parent=Os03t0395900-02
Chr03	irgsp1_rep	CDS	15986546	15986742	.	+	0	Parent=Os03t0395900-02
Chr03	irgsp1_rep	CDS	15987973	15988011	.	+	1	Parent=Os03t0395900-02
Chr03	irgsp1_rep	CDS	15988079	15988227	.	+	1	Parent=Os03t0395900-02
Chr03	irgsp1_rep	CDS	15988432	15988507	.	+	2	Parent=Os03t0395900-02
Chr03	irgsp1_rep	CDS	15990148	15990442	.	+	1	Parent=Os03t0395900-02
Chr03	irgsp1_rep	CDS	15990518	15990624	.	+	0	Parent=Os03t0395900-02
Chr03	irgsp1_rep	CDS	15990724	15990771	.	+	1	Parent=Os03t0395900-02
Chr03	irgsp1_rep	CDS	15990850	15991056	.	+	1	Parent=Os03t0395900-02
Chr03	irgsp1_rep	CDS	15991365	15991466	.	+	1	Parent=Os03t0395900-02
Chr03	irgsp1_rep	CDS	15991708	15991835	.	+	1	Parent=Os03t0395900-02
Chr03	irgsp1_rep	CDS	15991946	15992069	.	+	2	Parent=Os03t0395900-02
Chr03	irgsp1_rep	CDS	15992329	15992427	.	+	1	Parent=Os03t0395900-02
Chr03	irgsp1_rep	CDS	15992529	15992553	.	+	1	Parent=Os03t0395900-02
Chr03	irgsp1_rep	three_prime_UTR	15992554	15992831	.	+	.	Parent=Os03t0395900-02
Chr03	irgsp1_rep	mRNA	15999306	16000543	.	+	.	ID=Os03t0396000-00;Name=Os03t0396000-00;Locus_id=Os03g0396000;Note=Conserved hypothetical protein.;Transcript_evidence=EU958651 (DDBJ);ORF_evidence=NP_001050296.1 (RefSeq);TENOR=Os03t0396000-00;KEGG=Os03t0396000-00
Chr03	irgsp1_rep	five_prime_UTR	15999306	15999367	.	+	.	Parent=Os03t0396000-00
Chr03	irgsp1_rep	CDS	15999368	16000543	.	+	0	Parent=Os03t0396000-00
Chr03	irgsp1_rep	mRNA	16016475	16018491	.	+	.	ID=Os03t0396100-00;Name=Os03t0396100-00;Locus_id=Os03g0396100;Note=Hypothetical protein.;Transcript_evidence=BT084741 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0396100-00
Chr03	irgsp1_rep	five_prime_UTR	16016475	16017399	.	+	.	Parent=Os03t0396100-00
Chr03	irgsp1_rep	CDS	16017400	16017621	.	+	0	Parent=Os03t0396100-00
Chr03	irgsp1_rep	three_prime_UTR	16017622	16017921	.	+	.	Parent=Os03t0396100-00
Chr03	irgsp1_rep	three_prime_UTR	16018212	16018491	.	+	.	Parent=Os03t0396100-00
Chr03	irgsp1_rep	mRNA	16016685	16018787	.	-	.	ID=Os03t0396200-01;Name=Os03t0396200-01;Locus_id=Os03g0396200;Note=Hypothetical conserved gene.;Transcript_evidence=AK106734 (DDBJ%2C Best hit);ORF_evidence=Q10K51 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-115-A03;Expression=AK106734;TENOR=Os03t0396200-01;KEGG=Os03t0396200-01
Chr03	irgsp1_rep	five_prime_UTR	16018740	16018787	.	-	.	Parent=Os03t0396200-01
Chr03	irgsp1_rep	CDS	16018502	16018739	.	-	0	Parent=Os03t0396200-01
Chr03	irgsp1_rep	CDS	16016685	16018435	.	-	2	Parent=Os03t0396200-01
Chr03	irgsp1_rep	mRNA	16020542	16022446	.	-	.	ID=Os03t0396300-01;Name=Os03t0396300-01;Locus_id=Os03g0396300;Note=Non-protein coding transcript.;Transcript_evidence=AK105503 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-127-D08;TENOR=Os03t0396300-01
Chr03	irgsp1_rep	exon	16020542	16022446	.	-	.	Parent=Os03t0396300-01
Chr03	irgsp1_rep	mRNA	16025189	16025924	.	-	.	ID=Os03t0396500-00;Name=Os03t0396500-00;Locus_id=Os03g0396500;CGSNL Gene Symbol=TIFY11G;CGSNL Gene Name=TIFY GENE 11G;Oryzabase Gene Symbol Synonym(s)=OsJAZ 15%2C OsJAZ15%2C OsTIFY11g;Oryzabase Gene Name Synonym(s)=Jasmonate ZIM-domain protein 15;Note=Tify domain containing protein.;Transcript_evidence=FP093276 (DDBJ);ORF_evidence=NP_001173460.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Tify (IPR010399),CO/COL/TOC1%2C conserved site (IPR018467);Oryzabase=15071;TENOR=Os03t0396500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	16025672	16025924	.	-	0	Parent=Os03t0396500-00
Chr03	irgsp1_rep	CDS	16025387	16025520	.	-	2	Parent=Os03t0396500-00
Chr03	irgsp1_rep	CDS	16025189	16025329	.	-	0	Parent=Os03t0396500-00
Chr03	irgsp1_rep	mRNA	16039012	16042746	.	+	.	ID=Os03t0396900-01;Name=Os03t0396900-01;Locus_id=Os03g0396900;Note=Hypothetical conserved gene.;Transcript_evidence=AK071398 (DDBJ%2C Best hit);ORF_evidence=A2XHM9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WW/Rsp5/WWP (IPR001202);NIAS_FLcDNA=J023092N10;Expression=AK071398;TENOR=Os03t0396900-01;KEGG=Os03t0396900-01
Chr03	irgsp1_rep	five_prime_UTR	16039012	16039151	.	+	.	Parent=Os03t0396900-01
Chr03	irgsp1_rep	CDS	16039152	16039231	.	+	0	Parent=Os03t0396900-01
Chr03	irgsp1_rep	CDS	16039383	16039452	.	+	1	Parent=Os03t0396900-01
Chr03	irgsp1_rep	CDS	16040858	16040912	.	+	0	Parent=Os03t0396900-01
Chr03	irgsp1_rep	CDS	16041141	16041223	.	+	2	Parent=Os03t0396900-01
Chr03	irgsp1_rep	CDS	16041301	16042132	.	+	0	Parent=Os03t0396900-01
Chr03	irgsp1_rep	CDS	16042466	16042568	.	+	2	Parent=Os03t0396900-01
Chr03	irgsp1_rep	CDS	16042641	16042746	.	+	1	Parent=Os03t0396900-01
Chr03	irgsp1_rep	mRNA	16039034	16045538	.	+	.	ID=Os03t0396900-02;Name=Os03t0396900-02;Locus_id=Os03g0396900;Note=Similar to PIMT.;Transcript_evidence=AK103513 (DDBJ%2C Best hit);ORF_evidence=A2XHM9 (UniProt);GO=Biological Process: RNA methylation (GO:0001510),Biological Process: RNA capping (GO:0009452),Molecular Function: protein binding (GO:0005515),Molecular Function: methyltransferase activity (GO:0008168);InterPro=WW/Rsp5/WWP (IPR001202),RNA cap guanine-N2 methyltransferase (IPR019012);NIAS_FLcDNA=J033131G05;Expression=AK103513;TENOR=Os03t0396900-02;KEGG=Os03t0396900-02
Chr03	irgsp1_rep	five_prime_UTR	16039034	16039151	.	+	.	Parent=Os03t0396900-02
Chr03	irgsp1_rep	CDS	16039152	16039231	.	+	0	Parent=Os03t0396900-02
Chr03	irgsp1_rep	CDS	16039383	16039452	.	+	1	Parent=Os03t0396900-02
Chr03	irgsp1_rep	CDS	16040858	16040912	.	+	0	Parent=Os03t0396900-02
Chr03	irgsp1_rep	CDS	16041141	16041223	.	+	2	Parent=Os03t0396900-02
Chr03	irgsp1_rep	CDS	16041301	16042132	.	+	0	Parent=Os03t0396900-02
Chr03	irgsp1_rep	CDS	16042466	16042568	.	+	2	Parent=Os03t0396900-02
Chr03	irgsp1_rep	CDS	16042641	16042780	.	+	1	Parent=Os03t0396900-02
Chr03	irgsp1_rep	CDS	16042931	16043162	.	+	2	Parent=Os03t0396900-02
Chr03	irgsp1_rep	CDS	16043485	16043620	.	+	1	Parent=Os03t0396900-02
Chr03	irgsp1_rep	CDS	16044490	16044584	.	+	0	Parent=Os03t0396900-02
Chr03	irgsp1_rep	CDS	16044663	16044786	.	+	1	Parent=Os03t0396900-02
Chr03	irgsp1_rep	CDS	16044972	16045094	.	+	0	Parent=Os03t0396900-02
Chr03	irgsp1_rep	three_prime_UTR	16045095	16045538	.	+	.	Parent=Os03t0396900-02
Chr03	irgsp1_rep	mRNA	16051297	16058311	.	+	.	ID=Os03t0397300-01;Name=Os03t0397300-01;Locus_id=Os03g0397300;Note=Metallophosphoesterase domain containing protein.;Transcript_evidence=AK071357 (DDBJ%2C Best hit);ORF_evidence=NP_175775.2 (RefSeq);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Metallophosphoesterase domain (IPR004843);NIAS_FLcDNA=J023089F18;Expression=AK071357;TENOR=Os03t0397300-01;KEGG=Os03t0397300-01
Chr03	irgsp1_rep	five_prime_UTR	16051297	16051430	.	+	.	Parent=Os03t0397300-01
Chr03	irgsp1_rep	CDS	16051431	16051577	.	+	0	Parent=Os03t0397300-01
Chr03	irgsp1_rep	CDS	16052047	16052085	.	+	0	Parent=Os03t0397300-01
Chr03	irgsp1_rep	CDS	16052240	16052418	.	+	0	Parent=Os03t0397300-01
Chr03	irgsp1_rep	CDS	16054457	16054592	.	+	1	Parent=Os03t0397300-01
Chr03	irgsp1_rep	CDS	16055051	16055147	.	+	0	Parent=Os03t0397300-01
Chr03	irgsp1_rep	CDS	16055757	16055816	.	+	2	Parent=Os03t0397300-01
Chr03	irgsp1_rep	CDS	16055903	16056003	.	+	2	Parent=Os03t0397300-01
Chr03	irgsp1_rep	CDS	16056187	16056221	.	+	0	Parent=Os03t0397300-01
Chr03	irgsp1_rep	CDS	16056802	16056859	.	+	1	Parent=Os03t0397300-01
Chr03	irgsp1_rep	CDS	16056932	16057006	.	+	0	Parent=Os03t0397300-01
Chr03	irgsp1_rep	CDS	16057077	16057234	.	+	0	Parent=Os03t0397300-01
Chr03	irgsp1_rep	CDS	16057330	16057590	.	+	1	Parent=Os03t0397300-01
Chr03	irgsp1_rep	CDS	16057677	16057920	.	+	1	Parent=Os03t0397300-01
Chr03	irgsp1_rep	three_prime_UTR	16057921	16058311	.	+	.	Parent=Os03t0397300-01
Chr03	irgsp1_rep	mRNA	16055582	16055672	.	-	.	ID=Os03t0397350-00;Name=Os03t0397350-00;Locus_id=Os03g0397350;Note=Non-protein coding transcript.;Transcript_evidence=EU942010 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0397350-00
Chr03	irgsp1_rep	exon	16055582	16055672	.	-	.	Parent=Os03t0397350-00
Chr03	irgsp1_rep	mRNA	16061184	16065089	.	+	.	ID=Os03t0397400-01;Name=Os03t0397400-01;Locus_id=Os03g0397400;CGSNL Gene Symbol=CAX2;CGSNL Gene Name=Ca(2+)/H(+) EXCHANGER 2;Oryzabase Gene Symbol Synonym(s)=OsCAX2%2C CAX5%2C OsNCX7%2C OsNCX7.1%2C OsNCX7.2%2C NCX7%2C OsVCX2%2C OsOSCA1.2%2C OSCA1.2;Oryzabase Gene Name Synonym(s)=Vacuolar cation/proton exchanger 2%2C Ca(2+)/H(+) exchanger 2%2C cation/H+ exchanger 2%2C Na+/Ca2+ Exchanger 7%2C Sodium/calcium exchanger 7%2C OSCA channels 1.2;Note=Similar to Low affinity calcium transporter CAX2 (Fragment).;Transcript_evidence=AK069928 (DDBJ%2C Best hit);ORF_evidence=Q5KQN0 (UniProt);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: cation transmembrane transporter activity (GO:0008324);InterPro=Calcium/proton exchanger (IPR004713),Calcium/proton exchanger superfamily (IPR004798),Sodium/calcium exchanger membrane region (IPR004837);NIAS_FLcDNA=J023036P06;Oryzabase=8982;Expression=AK069928;TENOR=Os03t0397400-01;KEGG=Os03t0397400-01
Chr03	irgsp1_rep	five_prime_UTR	16061184	16061359	.	+	.	Parent=Os03t0397400-01
Chr03	irgsp1_rep	CDS	16061360	16061638	.	+	0	Parent=Os03t0397400-01
Chr03	irgsp1_rep	CDS	16061847	16061917	.	+	0	Parent=Os03t0397400-01
Chr03	irgsp1_rep	CDS	16062028	16062056	.	+	1	Parent=Os03t0397400-01
Chr03	irgsp1_rep	CDS	16062147	16062343	.	+	2	Parent=Os03t0397400-01
Chr03	irgsp1_rep	CDS	16062438	16062650	.	+	0	Parent=Os03t0397400-01
Chr03	irgsp1_rep	CDS	16063130	16063258	.	+	0	Parent=Os03t0397400-01
Chr03	irgsp1_rep	CDS	16063426	16063542	.	+	0	Parent=Os03t0397400-01
Chr03	irgsp1_rep	CDS	16063630	16063683	.	+	0	Parent=Os03t0397400-01
Chr03	irgsp1_rep	CDS	16063828	16063944	.	+	0	Parent=Os03t0397400-01
Chr03	irgsp1_rep	CDS	16064058	16064151	.	+	0	Parent=Os03t0397400-01
Chr03	irgsp1_rep	CDS	16064569	16064582	.	+	2	Parent=Os03t0397400-01
Chr03	irgsp1_rep	three_prime_UTR	16064583	16065089	.	+	.	Parent=Os03t0397400-01
Chr03	irgsp1_rep	mRNA	16065907	16069194	.	+	.	ID=Os03t0397500-01;Name=Os03t0397500-01;Locus_id=Os03g0397500;Oryzabase Gene Symbol Synonym(s)=OsWD40-74;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK073478 (DDBJ%2C Best hit);ORF_evidence=NP_001152185.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J033044C19;Oryzabase=10755;Expression=AK073478;TENOR=Os03t0397500-01;KEGG=Os03t0397500-01
Chr03	irgsp1_rep	five_prime_UTR	16065907	16065983	.	+	.	Parent=Os03t0397500-01
Chr03	irgsp1_rep	CDS	16065984	16067698	.	+	0	Parent=Os03t0397500-01
Chr03	irgsp1_rep	CDS	16068809	16068815	.	+	1	Parent=Os03t0397500-01
Chr03	irgsp1_rep	three_prime_UTR	16068816	16069194	.	+	.	Parent=Os03t0397500-01
Chr03	irgsp1_rep	mRNA	16065925	16069097	.	-	.	ID=Os03t0397550-00;Name=Os03t0397550-00;Locus_id=Os03g0397550;Note=Hypothetical protein.;Transcript_evidence=tplb0036p15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0397550-00
Chr03	irgsp1_rep	five_prime_UTR	16068803	16069097	.	-	.	Parent=Os03t0397550-00
Chr03	irgsp1_rep	five_prime_UTR	16067133	16067695	.	-	.	Parent=Os03t0397550-00
Chr03	irgsp1_rep	CDS	16066740	16067132	.	-	0	Parent=Os03t0397550-00
Chr03	irgsp1_rep	three_prime_UTR	16065925	16066739	.	-	.	Parent=Os03t0397550-00
Chr03	irgsp1_rep	mRNA	16070955	16072483	.	+	.	ID=Os03t0397600-00;Name=Os03t0397600-00;Locus_id=Os03g0397600;Note=Glycoside hydrolase%2C family 17 protein.;Transcript_evidence=tplb0045m18 (Wheat FLcDNA);ORF_evidence=NP_001147933.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);TENOR=Os03t0397600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	16070955	16071001	.	+	.	Parent=Os03t0397600-00
Chr03	irgsp1_rep	CDS	16071002	16072483	.	+	0	Parent=Os03t0397600-00
Chr03	irgsp1_rep	mRNA	16072834	16078822	.	-	.	ID=Os03t0397700-01;Name=Os03t0397700-01;Locus_id=Os03g0397700;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK111635 (DDBJ%2C Best hit);ORF_evidence=Q84MU6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J013119H22;TENOR=Os03t0397700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	16078644	16078822	.	-	.	Parent=Os03t0397700-01
Chr03	irgsp1_rep	CDS	16078505	16078643	.	-	0	Parent=Os03t0397700-01
Chr03	irgsp1_rep	CDS	16077328	16077460	.	-	2	Parent=Os03t0397700-01
Chr03	irgsp1_rep	CDS	16077156	16077227	.	-	1	Parent=Os03t0397700-01
Chr03	irgsp1_rep	CDS	16076990	16077058	.	-	1	Parent=Os03t0397700-01
Chr03	irgsp1_rep	CDS	16076831	16076902	.	-	1	Parent=Os03t0397700-01
Chr03	irgsp1_rep	CDS	16076673	16076741	.	-	1	Parent=Os03t0397700-01
Chr03	irgsp1_rep	CDS	16076508	16076579	.	-	1	Parent=Os03t0397700-01
Chr03	irgsp1_rep	CDS	16076346	16076411	.	-	1	Parent=Os03t0397700-01
Chr03	irgsp1_rep	CDS	16076204	16076269	.	-	1	Parent=Os03t0397700-01
Chr03	irgsp1_rep	CDS	16075561	16075928	.	-	1	Parent=Os03t0397700-01
Chr03	irgsp1_rep	CDS	16075156	16075451	.	-	2	Parent=Os03t0397700-01
Chr03	irgsp1_rep	CDS	16074616	16074746	.	-	0	Parent=Os03t0397700-01
Chr03	irgsp1_rep	CDS	16074514	16074517	.	-	1	Parent=Os03t0397700-01
Chr03	irgsp1_rep	three_prime_UTR	16074475	16074513	.	-	.	Parent=Os03t0397700-01
Chr03	irgsp1_rep	three_prime_UTR	16074273	16074408	.	-	.	Parent=Os03t0397700-01
Chr03	irgsp1_rep	three_prime_UTR	16073656	16073786	.	-	.	Parent=Os03t0397700-01
Chr03	irgsp1_rep	three_prime_UTR	16073370	16073526	.	-	.	Parent=Os03t0397700-01
Chr03	irgsp1_rep	three_prime_UTR	16072834	16073272	.	-	.	Parent=Os03t0397700-01
Chr03	irgsp1_rep	mRNA	16072911	16076238	.	-	.	ID=Os03t0397700-02;Name=Os03t0397700-02;Locus_id=Os03g0397700;Note=Similar to Leucine-rich repeat transmembrane protein kinase 1-like protein.;Transcript_evidence=AK111995 (DDBJ%2C Best hit);ORF_evidence=Q5GAP9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-033-G05;TENOR=Os03t0397700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	16076204	16076238	.	-	.	Parent=Os03t0397700-02
Chr03	irgsp1_rep	five_prime_UTR	16075673	16075928	.	-	.	Parent=Os03t0397700-02
Chr03	irgsp1_rep	CDS	16075561	16075672	.	-	0	Parent=Os03t0397700-02
Chr03	irgsp1_rep	CDS	16075156	16075451	.	-	2	Parent=Os03t0397700-02
Chr03	irgsp1_rep	CDS	16074475	16074746	.	-	0	Parent=Os03t0397700-02
Chr03	irgsp1_rep	CDS	16074273	16074408	.	-	1	Parent=Os03t0397700-02
Chr03	irgsp1_rep	CDS	16073656	16073786	.	-	0	Parent=Os03t0397700-02
Chr03	irgsp1_rep	CDS	16073370	16073526	.	-	1	Parent=Os03t0397700-02
Chr03	irgsp1_rep	CDS	16073129	16073272	.	-	0	Parent=Os03t0397700-02
Chr03	irgsp1_rep	three_prime_UTR	16072911	16073128	.	-	.	Parent=Os03t0397700-02
Chr03	irgsp1_rep	mRNA	16073198	16075736	.	+	.	ID=Os03t0397900-00;Name=Os03t0397900-00;Locus_id=Os03g0397900;Note=Non-protein coding transcript.;Transcript_evidence=tplb0047d04 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os03t0397900-00
Chr03	irgsp1_rep	exon	16073198	16073281	.	+	.	Parent=Os03t0397900-00
Chr03	irgsp1_rep	exon	16073380	16073509	.	+	.	Parent=Os03t0397900-00
Chr03	irgsp1_rep	exon	16073644	16073791	.	+	.	Parent=Os03t0397900-00
Chr03	irgsp1_rep	exon	16074279	16074385	.	+	.	Parent=Os03t0397900-00
Chr03	irgsp1_rep	exon	16074453	16074742	.	+	.	Parent=Os03t0397900-00
Chr03	irgsp1_rep	exon	16075148	16075441	.	+	.	Parent=Os03t0397900-00
Chr03	irgsp1_rep	exon	16075552	16075736	.	+	.	Parent=Os03t0397900-00
Chr03	irgsp1_rep	mRNA	16117258	16117918	.	+	.	ID=Os03t0398250-00;Name=Os03t0398250-00;Locus_id=Os03g0398250;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=CT835237 (DDBJ%2C Best hit);ORF_evidence=D0AB58 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os03t0398250-00;KEGG=Os03t0398250-00
Chr03	irgsp1_rep	five_prime_UTR	16117258	16117265	.	+	.	Parent=Os03t0398250-00
Chr03	irgsp1_rep	CDS	16117266	16117709	.	+	0	Parent=Os03t0398250-00
Chr03	irgsp1_rep	three_prime_UTR	16117710	16117918	.	+	.	Parent=Os03t0398250-00
Chr03	irgsp1_rep	mRNA	16121637	16122055	.	-	.	ID=Os03t0398366-00;Name=Os03t0398366-00;Locus_id=Os03g0398366;Note=Similar to transferase.;Transcript_evidence=BT041281 (DDBJ);ORF_evidence=NP_001150426.1 (RefSeq);TENOR=Os03t0398366-00
Chr03	irgsp1_rep	five_prime_UTR	16121964	16122055	.	-	.	Parent=Os03t0398366-00
Chr03	irgsp1_rep	CDS	16121637	16121963	.	-	0	Parent=Os03t0398366-00
Chr03	irgsp1_rep	mRNA	16136091	16137159	.	+	.	ID=Os03t0398600-00;Name=Os03t0398600-00;Locus_id=Os03g0398600;Note=Hypothetical conserved gene.;Transcript_evidence=FP092295 (DDBJ);ORF_evidence=NP_001173465.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os03t0398600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	16136091	16136126	.	+	.	Parent=Os03t0398600-00
Chr03	irgsp1_rep	CDS	16136127	16136969	.	+	0	Parent=Os03t0398600-00
Chr03	irgsp1_rep	three_prime_UTR	16136970	16137159	.	+	.	Parent=Os03t0398600-00
Chr03	irgsp1_rep	mRNA	16151227	16153195	.	-	.	ID=Os03t0398900-01;Name=Os03t0398900-01;Locus_id=Os03g0398900;Note=Hypothetical protein.;Transcript_evidence=AK107457 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-128-C11;Expression=AK107457;TENOR=Os03t0398900-01;KEGG=Os03t0398900-01
Chr03	irgsp1_rep	five_prime_UTR	16152236	16153195	.	-	.	Parent=Os03t0398900-01
Chr03	irgsp1_rep	CDS	16151998	16152235	.	-	0	Parent=Os03t0398900-01
Chr03	irgsp1_rep	CDS	16151361	16151707	.	-	2	Parent=Os03t0398900-01
Chr03	irgsp1_rep	three_prime_UTR	16151227	16151360	.	-	.	Parent=Os03t0398900-01
Chr03	irgsp1_rep	mRNA	16151375	16153554	.	+	.	ID=Os03t0399000-01;Name=Os03t0399000-01;Locus_id=Os03g0399000;CGSNL Gene Symbol=PME12;CGSNL Gene Name=PECTIN METHYLESTERASE 12;Oryzabase Gene Symbol Synonym(s)=OsPME12;Oryzabase Gene Name Synonym(s)=pectin methylesterase 12;Note=Pectin lyase fold domain containing protein.;Transcript_evidence=AK069492 (DDBJ%2C Best hit);ORF_evidence=A2XHP1 (UniProt);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectinesterase inhibitor (IPR006501),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),Pectinesterase%2C active site (IPR018040);NIAS_FLcDNA=J023021B13;Oryzabase=13176;Expression=AK069492;TENOR=Os03t0399000-01;KEGG=Os03t0399000-01
Chr03	irgsp1_rep	five_prime_UTR	16151375	16151525	.	+	.	Parent=Os03t0399000-01
Chr03	irgsp1_rep	CDS	16151526	16152603	.	+	0	Parent=Os03t0399000-01
Chr03	irgsp1_rep	CDS	16152693	16153426	.	+	2	Parent=Os03t0399000-01
Chr03	irgsp1_rep	three_prime_UTR	16153427	16153554	.	+	.	Parent=Os03t0399000-01
Chr03	irgsp1_rep	mRNA	16171366	16172869	.	-	.	ID=Os03t0399400-01;Name=Os03t0399400-01;Locus_id=Os03g0399400;Oryzabase Gene Symbol Synonym(s)=OsFbox150%2C Os_F0123;Oryzabase Gene Name Synonym(s)=F-box protein 150;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK241964 (DDBJ%2C Best hit);ORF_evidence=NP_001151397.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J075094I02;Oryzabase=16939;TENOR=Os03t0399400-01;KEGG=Os03t0399400-01
Chr03	irgsp1_rep	five_prime_UTR	16172775	16172869	.	-	.	Parent=Os03t0399400-01
Chr03	irgsp1_rep	CDS	16171548	16172774	.	-	0	Parent=Os03t0399400-01
Chr03	irgsp1_rep	three_prime_UTR	16171366	16171547	.	-	.	Parent=Os03t0399400-01
Chr03	irgsp1_rep	mRNA	16181722	16181932	.	-	.	ID=Os03t0399466-00;Name=Os03t0399466-00;Locus_id=Os03g0399466;Note=Non-protein coding transcript.;Transcript_evidence=CT835287 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os03t0399466-00
Chr03	irgsp1_rep	exon	16181722	16181932	.	-	.	Parent=Os03t0399466-00
Chr03	irgsp1_rep	mRNA	16182053	16191797	.	-	.	ID=Os03t0399532-00;Name=Os03t0399532-00;Locus_id=Os03g0399532;Note=Similar to phosphatidylinositol-4-phosphate 5-kinase family protein.;Transcript_evidence=AK367170 (DDBJ);ORF_evidence=XP_002882874.1 (RefSeq);GO=Biological Process: cellular protein metabolic process (GO:0044267),Molecular Function: ATP binding (GO:0005524);InterPro=Chaperonin Cpn60/TCP-1 (IPR002423);Oryzabase=23561;TENOR=Os03t0399532-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	16190998	16191797	.	-	0	Parent=Os03t0399532-00
Chr03	irgsp1_rep	CDS	16190653	16190806	.	-	1	Parent=Os03t0399532-00
Chr03	irgsp1_rep	CDS	16190229	16190573	.	-	0	Parent=Os03t0399532-00
Chr03	irgsp1_rep	CDS	16188804	16189056	.	-	0	Parent=Os03t0399532-00
Chr03	irgsp1_rep	CDS	16188106	16188737	.	-	2	Parent=Os03t0399532-00
Chr03	irgsp1_rep	CDS	16187681	16188012	.	-	0	Parent=Os03t0399532-00
Chr03	irgsp1_rep	CDS	16187415	16187559	.	-	1	Parent=Os03t0399532-00
Chr03	irgsp1_rep	three_prime_UTR	16187272	16187414	.	-	.	Parent=Os03t0399532-00
Chr03	irgsp1_rep	three_prime_UTR	16184786	16186267	.	-	.	Parent=Os03t0399532-00
Chr03	irgsp1_rep	three_prime_UTR	16183613	16183873	.	-	.	Parent=Os03t0399532-00
Chr03	irgsp1_rep	three_prime_UTR	16182053	16182327	.	-	.	Parent=Os03t0399532-00
Chr03	irgsp1_rep	mRNA	16197789	16200053	.	+	.	ID=Os03t0399600-01;Name=Os03t0399600-01;Locus_id=Os03g0399600;Note=Hypothetical protein.;Transcript_evidence=AK068188 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013135E21;TENOR=Os03t0399600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	16197789	16197789	.	+	.	Parent=Os03t0399600-01
Chr03	irgsp1_rep	CDS	16197790	16198272	.	+	0	Parent=Os03t0399600-01
Chr03	irgsp1_rep	three_prime_UTR	16198273	16198312	.	+	.	Parent=Os03t0399600-01
Chr03	irgsp1_rep	three_prime_UTR	16199208	16200053	.	+	.	Parent=Os03t0399600-01
Chr03	irgsp1_rep	mRNA	16197824	16202130	.	+	.	ID=Os03t0399600-02;Name=Os03t0399600-02;Locus_id=Os03g0399600;Note=Conserved hypothetical protein.;Transcript_evidence=AK120368 (DDBJ%2C Best hit);ORF_evidence=XP_002458835.1 (RefSeq);NIAS_FLcDNA=J013070H20;TENOR=Os03t0399600-02;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	16197824	16200584	.	+	.	Parent=Os03t0399600-02
Chr03	irgsp1_rep	CDS	16200585	16200734	.	+	0	Parent=Os03t0399600-02
Chr03	irgsp1_rep	three_prime_UTR	16200735	16202130	.	+	.	Parent=Os03t0399600-02
Chr03	irgsp1_rep	mRNA	16198252	16199544	.	+	.	ID=Os03t0399600-03;Name=Os03t0399600-03;Locus_id=Os03g0399600;Note=Non-protein coding transcript.;Transcript_evidence=AK063084 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-111-A06;TENOR=Os03t0399600-03
Chr03	irgsp1_rep	exon	16198252	16198312	.	+	.	Parent=Os03t0399600-03
Chr03	irgsp1_rep	exon	16199208	16199544	.	+	.	Parent=Os03t0399600-03
Chr03	irgsp1_rep	mRNA	16209132	16210009	.	+	.	ID=Os03t0399800-01;Name=Os03t0399800-01;Locus_id=Os03g0399800;Note=Mannose-binding lectin domain containing protein.;Transcript_evidence=AK241451 (DDBJ%2C Best hit);ORF_evidence=NP_001050311.2 (RefSeq);InterPro=Mannose-binding lectin (IPR001229);NIAS_FLcDNA=J065163K13;TENOR=Os03t0399800-01;KEGG=Os03t0399800-01
Chr03	irgsp1_rep	five_prime_UTR	16209132	16209133	.	+	.	Parent=Os03t0399800-01
Chr03	irgsp1_rep	CDS	16209134	16209205	.	+	0	Parent=Os03t0399800-01
Chr03	irgsp1_rep	CDS	16209303	16209830	.	+	0	Parent=Os03t0399800-01
Chr03	irgsp1_rep	three_prime_UTR	16209831	16210009	.	+	.	Parent=Os03t0399800-01
Chr03	irgsp1_rep	mRNA	16214470	16215417	.	+	.	ID=Os03t0399900-01;Name=Os03t0399900-01;Locus_id=Os03g0399900;Note=Mannose-binding lectin domain containing protein.;Transcript_evidence=AK099576 (DDBJ%2C Best hit);ORF_evidence=A2XHP9 (UniProt);InterPro=Mannose-binding lectin (IPR001229);NIAS_FLcDNA=J013037H02;TENOR=Os03t0399900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	16214470	16214557	.	+	.	Parent=Os03t0399900-01
Chr03	irgsp1_rep	CDS	16214558	16214835	.	+	0	Parent=Os03t0399900-01
Chr03	irgsp1_rep	CDS	16214962	16214989	.	+	1	Parent=Os03t0399900-01
Chr03	irgsp1_rep	three_prime_UTR	16214990	16215417	.	+	.	Parent=Os03t0399900-01
Chr03	irgsp1_rep	mRNA	16214645	16215229	.	-	.	ID=Os03t0399950-00;Name=Os03t0399950-00;Locus_id=Os03g0399950;Note=Hypothetical protein.;Transcript_evidence=BT016217 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0399950-00
Chr03	irgsp1_rep	five_prime_UTR	16215195	16215229	.	-	.	Parent=Os03t0399950-00
Chr03	irgsp1_rep	CDS	16214953	16215194	.	-	0	Parent=Os03t0399950-00
Chr03	irgsp1_rep	CDS	16214645	16214822	.	-	1	Parent=Os03t0399950-00
Chr03	irgsp1_rep	mRNA	16218172	16221298	.	+	.	ID=Os03t0400000-00;Name=Os03t0400000-00;Locus_id=Os03g0400000;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9F8W7 (UniProt);TENOR=Os03t0400000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	16218172	16218403	.	+	0	Parent=Os03t0400000-00
Chr03	irgsp1_rep	CDS	16218577	16218689	.	+	2	Parent=Os03t0400000-00
Chr03	irgsp1_rep	CDS	16219607	16219770	.	+	0	Parent=Os03t0400000-00
Chr03	irgsp1_rep	CDS	16221208	16221298	.	+	1	Parent=Os03t0400000-00
Chr03	irgsp1_rep	mRNA	16227657	16228193	.	-	.	ID=Os03t0400200-00;Name=Os03t0400200-00;Locus_id=Os03g0400200;Note=Plant disease resistance response protein domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q94LE8 (UniProt);InterPro=Plant disease resistance response protein (IPR004265);TENOR=Os03t0400200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	16227657	16228193	.	-	0	Parent=Os03t0400200-00
Chr03	irgsp1_rep	mRNA	16246825	16247574	.	+	.	ID=Os03t0400600-01;Name=Os03t0400600-01;Locus_id=Os03g0400600;Note=Conserved hypothetical protein.;Transcript_evidence=AK073516 (DDBJ%2C Best hit);ORF_evidence=Q10K16 (UniProt);NIAS_FLcDNA=J033042C06;TENOR=Os03t0400600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	16246825	16247262	.	+	.	Parent=Os03t0400600-01
Chr03	irgsp1_rep	CDS	16247263	16247517	.	+	0	Parent=Os03t0400600-01
Chr03	irgsp1_rep	three_prime_UTR	16247518	16247574	.	+	.	Parent=Os03t0400600-01
Chr03	irgsp1_rep	mRNA	16250380	16251580	.	-	.	ID=Os03t0400700-01;Name=Os03t0400700-01;Locus_id=Os03g0400700;CGSNL Gene Symbol=LEA11;CGSNL Gene Name=LATE EMBRYOGENESIS ABUNDANT PROTEIN 11;Oryzabase Gene Symbol Synonym(s)=OsLEA11;Oryzabase Gene Name Synonym(s)=late embryogenesis abundant protein 11;Note=Similar to retrotransposon protein.;Transcript_evidence=AK289266 (DDBJ%2C Best hit);ORF_evidence=Q10K15 (UniProt);GO=Biological Process: response to stress (GO:0006950);InterPro=Late embryogenesis abundant protein%2C LEA-5 (IPR004926);NIAS_FLcDNA=J100088P04;Oryzabase=10179;TENOR=Os03t0400700-01;KEGG=Os03t0400700-01
Chr03	irgsp1_rep	five_prime_UTR	16251484	16251580	.	-	.	Parent=Os03t0400700-01
Chr03	irgsp1_rep	CDS	16251446	16251483	.	-	0	Parent=Os03t0400700-01
Chr03	irgsp1_rep	CDS	16250621	16250846	.	-	1	Parent=Os03t0400700-01
Chr03	irgsp1_rep	three_prime_UTR	16250380	16250620	.	-	.	Parent=Os03t0400700-01
Chr03	irgsp1_rep	mRNA	16262868	16265236	.	-	.	ID=Os03t0400800-00;Name=Os03t0400800-00;Locus_id=Os03g0400800;Note=Similar to Leucine Rich Repeat family protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q94H87 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);TENOR=Os03t0400800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	16265185	16265236	.	-	0	Parent=Os03t0400800-00
Chr03	irgsp1_rep	CDS	16262868	16265077	.	-	2	Parent=Os03t0400800-00
Chr03	irgsp1_rep	mRNA	16259903	16261152	.	-	.	ID=Os03t0400901-00;Name=Os03t0400901-00;Locus_id=Os03g0400901;Note=Hypothetical conserved gene.;Transcript_evidence=AK372006 (DDBJ);ORF_evidence=Q94H87 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);TENOR=Os03t0400901-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	16259908	16261152	.	-	0	Parent=Os03t0400901-00
Chr03	irgsp1_rep	three_prime_UTR	16259903	16259907	.	-	.	Parent=Os03t0400901-00
Chr03	irgsp1_rep	mRNA	16282782	16290478	.	+	.	ID=Os03t0401100-01;Name=Os03t0401100-01;Locus_id=Os03g0401100;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=AK099659 (DDBJ%2C Best hit);ORF_evidence=Q10K10 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Phox/Bem1p (IPR000270),Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J013066I05;TENOR=Os03t0401100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	16282782	16283298	.	+	.	Parent=Os03t0401100-01
Chr03	irgsp1_rep	CDS	16283299	16284942	.	+	0	Parent=Os03t0401100-01
Chr03	irgsp1_rep	CDS	16285021	16285098	.	+	0	Parent=Os03t0401100-01
Chr03	irgsp1_rep	CDS	16285663	16285848	.	+	0	Parent=Os03t0401100-01
Chr03	irgsp1_rep	three_prime_UTR	16285849	16286562	.	+	.	Parent=Os03t0401100-01
Chr03	irgsp1_rep	three_prime_UTR	16286723	16286845	.	+	.	Parent=Os03t0401100-01
Chr03	irgsp1_rep	three_prime_UTR	16287693	16287780	.	+	.	Parent=Os03t0401100-01
Chr03	irgsp1_rep	three_prime_UTR	16290027	16290478	.	+	.	Parent=Os03t0401100-01
Chr03	irgsp1_rep	mRNA	16293784	16297120	.	-	.	ID=Os03t0401200-01;Name=Os03t0401200-01;Locus_id=Os03g0401200;Oryzabase Gene Symbol Synonym(s)=OsDjC30;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C30;Note=Similar to DnaJ homolog subfamily B member 4 (Heat shock 40 kDa protein 1 homolog) (Heat shock protein 40 homolog) (HSP40 homolog).;Transcript_evidence=AK102643 (DDBJ%2C Best hit),AK102662 (DDBJ%2C Best hit);ORF_evidence=B8AQZ1 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Domain of unknown function DUF3444 (IPR024593);NIAS_FLcDNA=J033100G11,J033101I24;Oryzabase=12187;Expression=AK102643;TENOR=Os03t0401200-01;KEGG=Os03t0401200-01
Chr03	irgsp1_rep	five_prime_UTR	16296877	16297120	.	-	.	Parent=Os03t0401200-01
Chr03	irgsp1_rep	five_prime_UTR	16296331	16296464	.	-	.	Parent=Os03t0401200-01
Chr03	irgsp1_rep	CDS	16294084	16296330	.	-	0	Parent=Os03t0401200-01
Chr03	irgsp1_rep	three_prime_UTR	16293784	16294083	.	-	.	Parent=Os03t0401200-01
Chr03	irgsp1_rep	mRNA	16301279	16306089	.	-	.	ID=Os03t0401300-01;Name=Os03t0401300-01;Locus_id=Os03g0401300;CGSNL Gene Symbol=RSUS1;CGSNL Gene Name=SUCROSE SYNTHASE 1;Oryzabase Gene Symbol Synonym(s)=sus1%2C RSus1(t)%2C SUS1%2C SS2%2C OsScS2%2C RSs2%2C RSus1%2C SuSy1%2C OsSUS1%2C RSS2%2C RSus2%2C OsRSUS1;Oryzabase Gene Name Synonym(s)=sucrose synthase1%2C Sucrose synthase 1%2C Sucrose synthase 2%2C Sucrose-UDP glucosyltransferase 1%2C Sucrose synthase-2%2C rice SuSy gene 2%2C sucrose-UDP glucosyltransferase isozyme 2;Note=Sucrose synthase 2 (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase 2).;Transcript_evidence=AK100334 (DDBJ%2C Best hit);ORF_evidence=P31924 (UniProt);GO=Biological Process: sucrose metabolic process (GO:0005985),Biological Process: biosynthetic process (GO:0009058),Molecular Function: sucrose synthase activity (GO:0016157);InterPro=Sucrose synthase (IPR000368),Glycosyl transferase%2C family 1 (IPR001296),Sucrose synthase%2C plant/cyanobacteria (IPR012820);NIAS_FLcDNA=J023080P07;Oryzabase=2198;Expression=AK100334;TENOR=Os03t0401300-01;KEGG=Os03t0401300-01 (EC:2.4.1.13)
Chr03	irgsp1_rep	five_prime_UTR	16306058	16306089	.	-	.	Parent=Os03t0401300-01
Chr03	irgsp1_rep	CDS	16305948	16306057	.	-	0	Parent=Os03t0401300-01
Chr03	irgsp1_rep	CDS	16305090	16305219	.	-	1	Parent=Os03t0401300-01
Chr03	irgsp1_rep	CDS	16304843	16304994	.	-	0	Parent=Os03t0401300-01
Chr03	irgsp1_rep	CDS	16304530	16304722	.	-	1	Parent=Os03t0401300-01
Chr03	irgsp1_rep	CDS	16304286	16304404	.	-	0	Parent=Os03t0401300-01
Chr03	irgsp1_rep	CDS	16303950	16304166	.	-	1	Parent=Os03t0401300-01
Chr03	irgsp1_rep	CDS	16303770	16303865	.	-	0	Parent=Os03t0401300-01
Chr03	irgsp1_rep	CDS	16303515	16303688	.	-	0	Parent=Os03t0401300-01
Chr03	irgsp1_rep	CDS	16303311	16303427	.	-	0	Parent=Os03t0401300-01
Chr03	irgsp1_rep	CDS	16303061	16303227	.	-	0	Parent=Os03t0401300-01
Chr03	irgsp1_rep	CDS	16302732	16302956	.	-	1	Parent=Os03t0401300-01
Chr03	irgsp1_rep	CDS	16302327	16302645	.	-	1	Parent=Os03t0401300-01
Chr03	irgsp1_rep	CDS	16301984	16302228	.	-	0	Parent=Os03t0401300-01
Chr03	irgsp1_rep	CDS	16301703	16301889	.	-	1	Parent=Os03t0401300-01
Chr03	irgsp1_rep	three_prime_UTR	16301279	16301702	.	-	.	Parent=Os03t0401300-01
Chr03	irgsp1_rep	mRNA	16301374	16302930	.	-	.	ID=Os03t0401300-02;Name=Os03t0401300-02;Locus_id=Os03g0401300;CGSNL Gene Symbol=RSUS1;CGSNL Gene Name=SUCROSE SYNTHASE 1;Oryzabase Gene Symbol Synonym(s)=sus1%2C RSus1(t)%2C SUS1%2C SS2%2C OsScS2%2C RSs2%2C RSus1%2C SuSy1%2C OsSUS1%2C RSS2%2C RSus2%2C OsRSUS1;Oryzabase Gene Name Synonym(s)=sucrose synthase1%2C Sucrose synthase 1%2C Sucrose synthase 2%2C Sucrose-UDP glucosyltransferase 1%2C Sucrose synthase-2%2C rice SuSy gene 2%2C sucrose-UDP glucosyltransferase isozyme 2;Note=Similar to Sucrose synthase 1.;Transcript_evidence=AK061713 (DDBJ%2C Best hit);ORF_evidence=P31924 (UniProt);GO=Biological Process: sucrose metabolic process (GO:0005985),Biological Process: biosynthetic process (GO:0009058),Molecular Function: sucrose synthase activity (GO:0016157);InterPro=Sucrose synthase (IPR000368),Glycosyl transferase%2C family 1 (IPR001296),Sucrose synthase%2C plant/cyanobacteria (IPR012820);NIAS_FLcDNA=001-037-G10;Oryzabase=2198;Expression=AK061713;TENOR=Os03t0401300-02;KEGG=Os03t0401300-02 (EC:2.4.1.13)
Chr03	irgsp1_rep	five_prime_UTR	16302929	16302930	.	-	.	Parent=Os03t0401300-02
Chr03	irgsp1_rep	CDS	16302732	16302928	.	-	0	Parent=Os03t0401300-02
Chr03	irgsp1_rep	CDS	16302327	16302645	.	-	1	Parent=Os03t0401300-02
Chr03	irgsp1_rep	CDS	16301984	16302228	.	-	0	Parent=Os03t0401300-02
Chr03	irgsp1_rep	CDS	16301703	16301889	.	-	1	Parent=Os03t0401300-02
Chr03	irgsp1_rep	three_prime_UTR	16301374	16301702	.	-	.	Parent=Os03t0401300-02
Chr03	irgsp1_rep	mRNA	16301377	16302196	.	-	.	ID=Os03t0401300-03;Name=Os03t0401300-03;Locus_id=Os03g0401300;CGSNL Gene Symbol=RSUS1;CGSNL Gene Name=SUCROSE SYNTHASE 1;Oryzabase Gene Symbol Synonym(s)=sus1%2C RSus1(t)%2C SUS1%2C SS2%2C OsScS2%2C RSs2%2C RSus1%2C SuSy1%2C OsSUS1%2C RSS2%2C RSus2%2C OsRSUS1;Oryzabase Gene Name Synonym(s)=sucrose synthase1%2C Sucrose synthase 1%2C Sucrose synthase 2%2C Sucrose-UDP glucosyltransferase 1%2C Sucrose synthase-2%2C rice SuSy gene 2%2C sucrose-UDP glucosyltransferase isozyme 2;Note=Similar to Sucrose synthase metabolism (Fragment).;Transcript_evidence=AK119198 (DDBJ%2C Best hit);ORF_evidence=A6MZV1 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: sucrose synthase activity (GO:0016157);InterPro=Glycosyl transferase%2C family 1 (IPR001296),Sucrose synthase%2C plant/cyanobacteria (IPR012820);NIAS_FLcDNA=001-041-D01;Oryzabase=2198;Expression=AK119198;TENOR=Os03t0401300-03;KEGG=Os03t0401300-03 (EC:2.4.1.13)
Chr03	irgsp1_rep	five_prime_UTR	16302196	16302196	.	-	.	Parent=Os03t0401300-03
Chr03	irgsp1_rep	CDS	16301984	16302195	.	-	0	Parent=Os03t0401300-03
Chr03	irgsp1_rep	CDS	16301703	16301889	.	-	1	Parent=Os03t0401300-03
Chr03	irgsp1_rep	three_prime_UTR	16301377	16301702	.	-	.	Parent=Os03t0401300-03
Chr03	irgsp1_rep	mRNA	16301696	16306081	.	+	.	ID=Os03t0401333-00;Name=Os03t0401333-00;Locus_id=Os03g0401333;Note=Hypothetical protein.;Transcript_evidence=tplb0054p19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0401333-00
Chr03	irgsp1_rep	five_prime_UTR	16301696	16301886	.	+	.	Parent=Os03t0401333-00
Chr03	irgsp1_rep	five_prime_UTR	16301981	16302184	.	+	.	Parent=Os03t0401333-00
Chr03	irgsp1_rep	CDS	16302185	16302216	.	+	0	Parent=Os03t0401333-00
Chr03	irgsp1_rep	CDS	16302311	16302643	.	+	1	Parent=Os03t0401333-00
Chr03	irgsp1_rep	CDS	16302730	16302947	.	+	1	Parent=Os03t0401333-00
Chr03	irgsp1_rep	CDS	16303052	16303143	.	+	2	Parent=Os03t0401333-00
Chr03	irgsp1_rep	three_prime_UTR	16303144	16303222	.	+	.	Parent=Os03t0401333-00
Chr03	irgsp1_rep	three_prime_UTR	16303298	16303415	.	+	.	Parent=Os03t0401333-00
Chr03	irgsp1_rep	three_prime_UTR	16303502	16303690	.	+	.	Parent=Os03t0401333-00
Chr03	irgsp1_rep	three_prime_UTR	16303776	16303856	.	+	.	Parent=Os03t0401333-00
Chr03	irgsp1_rep	three_prime_UTR	16303942	16304168	.	+	.	Parent=Os03t0401333-00
Chr03	irgsp1_rep	three_prime_UTR	16304283	16304402	.	+	.	Parent=Os03t0401333-00
Chr03	irgsp1_rep	three_prime_UTR	16304521	16304715	.	+	.	Parent=Os03t0401333-00
Chr03	irgsp1_rep	three_prime_UTR	16304834	16304993	.	+	.	Parent=Os03t0401333-00
Chr03	irgsp1_rep	three_prime_UTR	16305089	16305209	.	+	.	Parent=Os03t0401333-00
Chr03	irgsp1_rep	three_prime_UTR	16305941	16306081	.	+	.	Parent=Os03t0401333-00
Chr03	irgsp1_rep	mRNA	16306856	16307624	.	-	.	ID=Os03t0401366-01;Name=Os03t0401366-01;Locus_id=Os03g0401366;Note=Non-protein coding transcript.;Transcript_evidence=AK108396 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-142-F10;TENOR=Os03t0401366-01
Chr03	irgsp1_rep	exon	16306856	16307624	.	-	.	Parent=Os03t0401366-01
Chr03	irgsp1_rep	mRNA	16358834	16359470	.	+	.	ID=Os03t0401951-01;Name=Os03t0401951-01;Locus_id=Os03g0401951;Note=Hypothetical gene.;Transcript_evidence=AK120311 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013055G03;Expression=AK120311;TENOR=Os03t0401951-01;KEGG=Os03t0401951-01
Chr03	irgsp1_rep	CDS	16358834	16359340	.	+	0	Parent=Os03t0401951-01
Chr03	irgsp1_rep	three_prime_UTR	16359341	16359470	.	+	.	Parent=Os03t0401951-01
Chr03	irgsp1_rep	mRNA	16359486	16362281	.	-	.	ID=Os03t0402000-01;Name=Os03t0402000-01;Locus_id=Os03g0402000;Note=TRAPP I complex%2C Bet3 domain containing protein.;Transcript_evidence=AK103200 (DDBJ%2C Best hit);ORF_evidence=NP_001151598.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Transport protein particle (TRAPP) component (IPR007194),TRAPP I complex%2C Bet3 (IPR016721),NO signalling/Golgi transport  ligand-binding domain (IPR024096);NIAS_FLcDNA=J033122A14;Expression=AK103200;TENOR=Os03t0402000-01;KEGG=Os03t0402000-01
Chr03	irgsp1_rep	five_prime_UTR	16362182	16362281	.	-	.	Parent=Os03t0402000-01
Chr03	irgsp1_rep	CDS	16362122	16362181	.	-	0	Parent=Os03t0402000-01
Chr03	irgsp1_rep	CDS	16361908	16362005	.	-	0	Parent=Os03t0402000-01
Chr03	irgsp1_rep	CDS	16360617	16360716	.	-	1	Parent=Os03t0402000-01
Chr03	irgsp1_rep	CDS	16360260	16360442	.	-	0	Parent=Os03t0402000-01
Chr03	irgsp1_rep	CDS	16359815	16359937	.	-	0	Parent=Os03t0402000-01
Chr03	irgsp1_rep	three_prime_UTR	16359486	16359814	.	-	.	Parent=Os03t0402000-01
Chr03	irgsp1_rep	mRNA	16378724	16379079	.	-	.	ID=Os03t0402200-00;Name=Os03t0402200-00;Locus_id=Os03g0402200;Note=Hypothetical protein.;Transcript_evidence=CT827911 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os03t0402200-00
Chr03	irgsp1_rep	five_prime_UTR	16379078	16379079	.	-	.	Parent=Os03t0402200-00
Chr03	irgsp1_rep	CDS	16378978	16379077	.	-	0	Parent=Os03t0402200-00
Chr03	irgsp1_rep	CDS	16378724	16378895	.	-	2	Parent=Os03t0402200-00
Chr03	irgsp1_rep	mRNA	16384695	16386794	.	-	.	ID=Os03t0402400-00;Name=Os03t0402400-00;Locus_id=Os03g0402400;Note=Similar to Ribosome-associated protein p40-like.;Transcript_evidence=EU964356 (DDBJ);ORF_evidence=Q38M60 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: small ribosomal subunit (GO:0015935),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S2 (IPR001865),Ribosomal protein S2%2C eukaryotic/archaeal (IPR005707),Ribosomal protein S2%2C conserved site (IPR018130),Ribosomal protein S2%2C flavodoxin-like domain (IPR023591);TENOR=Os03t0402400-00
Chr03	irgsp1_rep	five_prime_UTR	16386611	16386794	.	-	.	Parent=Os03t0402400-00
Chr03	irgsp1_rep	five_prime_UTR	16385999	16386248	.	-	.	Parent=Os03t0402400-00
Chr03	irgsp1_rep	CDS	16385705	16385998	.	-	0	Parent=Os03t0402400-00
Chr03	irgsp1_rep	CDS	16385421	16385620	.	-	0	Parent=Os03t0402400-00
Chr03	irgsp1_rep	CDS	16384846	16384912	.	-	1	Parent=Os03t0402400-00
Chr03	irgsp1_rep	three_prime_UTR	16384695	16384845	.	-	.	Parent=Os03t0402400-00
Chr03	irgsp1_rep	mRNA	16407699	16410007	.	-	.	ID=Os03t0402800-01;Name=Os03t0402800-01;Locus_id=Os03g0402800;CGSNL Gene Symbol=TIFY10A;CGSNL Gene Name=TIFY GENE 10A;Oryzabase Gene Symbol Synonym(s)=OsJAZ5%2C JAZ5%2C JAZ6%2C OsJAZ6%2C OsTIFY10A;Oryzabase Gene Name Synonym(s)=Jasmonate ZIM-domain protein 5%2C Jasmonate ZIM-domain protein 6;Note=Tify domain containing protein.;Transcript_evidence=AK061842 (DDBJ%2C Best hit),AK099557 (DDBJ%2C Best hit);ORF_evidence=Q10JZ5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Tify (IPR010399),CO/COL/TOC1%2C conserved site (IPR018467);NIAS_FLcDNA=001-040-E06,J013034A17;Oryzabase=9491;TENOR=Os03t0402800-01
Chr03	irgsp1_rep	five_prime_UTR	16409855	16410007	.	-	.	Parent=Os03t0402800-01
Chr03	irgsp1_rep	CDS	16409734	16409854	.	-	0	Parent=Os03t0402800-01
Chr03	irgsp1_rep	CDS	16409349	16409451	.	-	2	Parent=Os03t0402800-01
Chr03	irgsp1_rep	CDS	16408440	16408699	.	-	1	Parent=Os03t0402800-01
Chr03	irgsp1_rep	CDS	16408278	16408335	.	-	2	Parent=Os03t0402800-01
Chr03	irgsp1_rep	CDS	16408033	16408177	.	-	1	Parent=Os03t0402800-01
Chr03	irgsp1_rep	three_prime_UTR	16407699	16408032	.	-	.	Parent=Os03t0402800-01
Chr03	irgsp1_rep	mRNA	16407695	16408985	.	-	.	ID=Os03t0402800-02;Name=Os03t0402800-02;Locus_id=Os03g0402800;CGSNL Gene Symbol=TIFY10A;CGSNL Gene Name=TIFY GENE 10A;Oryzabase Gene Symbol Synonym(s)=OsJAZ5%2C JAZ5%2C JAZ6%2C OsJAZ6%2C OsTIFY10A;Oryzabase Gene Name Synonym(s)=Jasmonate ZIM-domain protein 5%2C Jasmonate ZIM-domain protein 6;Note=Similar to ZIM motif family protein%2C expressed.;Transcript_evidence=AK106184 (DDBJ%2C Best hit);ORF_evidence=Q10JZ5 (UniProt);InterPro=Tify (IPR010399);NIAS_FLcDNA=001-208-D06;Oryzabase=9491;Expression=AK106184;TENOR=Os03t0402800-02;KEGG=Os03t0402800-02
Chr03	irgsp1_rep	five_prime_UTR	16408759	16408985	.	-	.	Parent=Os03t0402800-02
Chr03	irgsp1_rep	CDS	16408402	16408758	.	-	0	Parent=Os03t0402800-02
Chr03	irgsp1_rep	three_prime_UTR	16407695	16408401	.	-	.	Parent=Os03t0402800-02
Chr03	irgsp1_rep	mRNA	16421056	16439493	.	+	.	ID=Os03t0403100-01;Name=Os03t0403100-01;Locus_id=Os03g0403100;Note=Similar to DNA-directed RNA polymerase subunit.;Transcript_evidence=AK073203 (DDBJ%2C Best hit);ORF_evidence=Q10JZ2 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899),Molecular Function: ribonucleoside binding (GO:0032549);InterPro=DNA-directed RNA polymerase%2C subunit 2%2C domain 6 (IPR007120),RNA polymerase%2C beta subunit%2C conserved site (IPR007121),RNA polymerase Rpb2%2C domain 7 (IPR007641),RNA polymerase Rpb2%2C domain 2 (IPR007642),RNA polymerase%2C beta subunit%2C protrusion (IPR007644),RNA polymerase Rpb2%2C domain 3 (IPR007645),RNA polymerase Rpb2%2C domain 4 (IPR007646),RNA polymerase Rpb2%2C domain 5 (IPR007647),RNA polymerase Rpb2%2C OB-fold (IPR014724),DNA-directed RNA polymerase%2C subunit 2 (IPR015712);NIAS_FLcDNA=J033021H21;Expression=AK073203;TENOR=Os03t0403100-01;KEGG=Os03t0403100-01 (EC:2.7.7.6)
Chr03	irgsp1_rep	five_prime_UTR	16421056	16421166	.	+	.	Parent=Os03t0403100-01
Chr03	irgsp1_rep	CDS	16421167	16421174	.	+	0	Parent=Os03t0403100-01
Chr03	irgsp1_rep	CDS	16421263	16421392	.	+	1	Parent=Os03t0403100-01
Chr03	irgsp1_rep	CDS	16421512	16421631	.	+	0	Parent=Os03t0403100-01
Chr03	irgsp1_rep	CDS	16421741	16421835	.	+	0	Parent=Os03t0403100-01
Chr03	irgsp1_rep	CDS	16422330	16422396	.	+	1	Parent=Os03t0403100-01
Chr03	irgsp1_rep	CDS	16422555	16422645	.	+	0	Parent=Os03t0403100-01
Chr03	irgsp1_rep	CDS	16422736	16422788	.	+	2	Parent=Os03t0403100-01
Chr03	irgsp1_rep	CDS	16422962	16423026	.	+	0	Parent=Os03t0403100-01
Chr03	irgsp1_rep	CDS	16424088	16424193	.	+	1	Parent=Os03t0403100-01
Chr03	irgsp1_rep	CDS	16426799	16426909	.	+	0	Parent=Os03t0403100-01
Chr03	irgsp1_rep	CDS	16427356	16427415	.	+	0	Parent=Os03t0403100-01
Chr03	irgsp1_rep	CDS	16427776	16427805	.	+	0	Parent=Os03t0403100-01
Chr03	irgsp1_rep	CDS	16428037	16428087	.	+	0	Parent=Os03t0403100-01
Chr03	irgsp1_rep	CDS	16428156	16428254	.	+	0	Parent=Os03t0403100-01
Chr03	irgsp1_rep	CDS	16428588	16428647	.	+	0	Parent=Os03t0403100-01
Chr03	irgsp1_rep	CDS	16428712	16428801	.	+	0	Parent=Os03t0403100-01
Chr03	irgsp1_rep	CDS	16429189	16429290	.	+	0	Parent=Os03t0403100-01
Chr03	irgsp1_rep	CDS	16429373	16429483	.	+	0	Parent=Os03t0403100-01
Chr03	irgsp1_rep	CDS	16429589	16429705	.	+	0	Parent=Os03t0403100-01
Chr03	irgsp1_rep	CDS	16430130	16430246	.	+	0	Parent=Os03t0403100-01
Chr03	irgsp1_rep	CDS	16430331	16430411	.	+	0	Parent=Os03t0403100-01
Chr03	irgsp1_rep	CDS	16431082	16431186	.	+	0	Parent=Os03t0403100-01
Chr03	irgsp1_rep	CDS	16431267	16431347	.	+	0	Parent=Os03t0403100-01
Chr03	irgsp1_rep	CDS	16431429	16431572	.	+	0	Parent=Os03t0403100-01
Chr03	irgsp1_rep	CDS	16431654	16431698	.	+	0	Parent=Os03t0403100-01
Chr03	irgsp1_rep	CDS	16431973	16432053	.	+	0	Parent=Os03t0403100-01
Chr03	irgsp1_rep	CDS	16432127	16432266	.	+	0	Parent=Os03t0403100-01
Chr03	irgsp1_rep	CDS	16432383	16432482	.	+	1	Parent=Os03t0403100-01
Chr03	irgsp1_rep	CDS	16433014	16433132	.	+	0	Parent=Os03t0403100-01
Chr03	irgsp1_rep	CDS	16433330	16433465	.	+	1	Parent=Os03t0403100-01
Chr03	irgsp1_rep	CDS	16433549	16433679	.	+	0	Parent=Os03t0403100-01
Chr03	irgsp1_rep	CDS	16434615	16434740	.	+	1	Parent=Os03t0403100-01
Chr03	irgsp1_rep	CDS	16434816	16434871	.	+	1	Parent=Os03t0403100-01
Chr03	irgsp1_rep	CDS	16435947	16436017	.	+	2	Parent=Os03t0403100-01
Chr03	irgsp1_rep	CDS	16437716	16437800	.	+	0	Parent=Os03t0403100-01
Chr03	irgsp1_rep	CDS	16437881	16437984	.	+	2	Parent=Os03t0403100-01
Chr03	irgsp1_rep	CDS	16438647	16438775	.	+	0	Parent=Os03t0403100-01
Chr03	irgsp1_rep	CDS	16439066	16439116	.	+	0	Parent=Os03t0403100-01
Chr03	irgsp1_rep	three_prime_UTR	16439117	16439493	.	+	.	Parent=Os03t0403100-01
Chr03	irgsp1_rep	mRNA	16433014	16438783	.	-	.	ID=Os03t0403251-00;Name=Os03t0403251-00;Locus_id=Os03g0403251;Note=Hypothetical gene.;Transcript_evidence=BT017109 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0403251-00;KEGG=Os03t0403251-00
Chr03	irgsp1_rep	five_prime_UTR	16438643	16438783	.	-	.	Parent=Os03t0403251-00
Chr03	irgsp1_rep	five_prime_UTR	16437887	16437980	.	-	.	Parent=Os03t0403251-00
Chr03	irgsp1_rep	five_prime_UTR	16437715	16437809	.	-	.	Parent=Os03t0403251-00
Chr03	irgsp1_rep	five_prime_UTR	16435910	16436017	.	-	.	Parent=Os03t0403251-00
Chr03	irgsp1_rep	five_prime_UTR	16434685	16434762	.	-	.	Parent=Os03t0403251-00
Chr03	irgsp1_rep	CDS	16434613	16434684	.	-	0	Parent=Os03t0403251-00
Chr03	irgsp1_rep	CDS	16433558	16433677	.	-	0	Parent=Os03t0403251-00
Chr03	irgsp1_rep	CDS	16433452	16433472	.	-	0	Parent=Os03t0403251-00
Chr03	irgsp1_rep	three_prime_UTR	16433310	16433451	.	-	.	Parent=Os03t0403251-00
Chr03	irgsp1_rep	three_prime_UTR	16433014	16433110	.	-	.	Parent=Os03t0403251-00
Chr03	irgsp1_rep	mRNA	16449407	16451763	.	+	.	ID=Os03t0403400-01;Name=Os03t0403400-01;Locus_id=Os03g0403400;Note=Six-bladed beta-propeller%2C TolB-like domain containing protein.;Transcript_evidence=AK111515 (DDBJ%2C Best hit);ORF_evidence=A2XHT1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40-like Beta Propeller (IPR011659),WD40/YVTN repeat-like-containing domain (IPR015943);NIAS_FLcDNA=J013002E06;Expression=AK111515;TENOR=Os03t0403400-01;KEGG=Os03t0403400-01
Chr03	irgsp1_rep	five_prime_UTR	16449407	16449465	.	+	.	Parent=Os03t0403400-01
Chr03	irgsp1_rep	CDS	16449466	16451700	.	+	0	Parent=Os03t0403400-01
Chr03	irgsp1_rep	three_prime_UTR	16451701	16451763	.	+	.	Parent=Os03t0403400-01
Chr03	irgsp1_rep	mRNA	16457621	16459112	.	-	.	ID=Os03t0403501-00;Name=Os03t0403501-00;Locus_id=Os03g0403501;Note=Hypothetical gene.;Transcript_evidence=BT064817 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0403501-00
Chr03	irgsp1_rep	five_prime_UTR	16458062	16459112	.	-	.	Parent=Os03t0403501-00
Chr03	irgsp1_rep	CDS	16457621	16458061	.	-	0	Parent=Os03t0403501-00
Chr03	irgsp1_rep	mRNA	16457908	16459449	.	+	.	ID=Os03t0403600-01;Name=Os03t0403600-01;Locus_id=Os03g0403600;Note=von Willebrand factor%2C type A domain containing protein.;Transcript_evidence=AK064220 (DDBJ%2C Best hit);ORF_evidence=B6TZ81 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=von Willebrand factor%2C type A (IPR002035);NIAS_FLcDNA=002-104-F12;Expression=AK064220;TENOR=Os03t0403600-01;KEGG=Os03t0403600-01
Chr03	irgsp1_rep	five_prime_UTR	16457908	16457909	.	+	.	Parent=Os03t0403600-01
Chr03	irgsp1_rep	CDS	16457910	16459160	.	+	0	Parent=Os03t0403600-01
Chr03	irgsp1_rep	three_prime_UTR	16459161	16459449	.	+	.	Parent=Os03t0403600-01
Chr03	irgsp1_rep	mRNA	16529003	16529478	.	+	.	ID=Os03t0404500-01;Name=Os03t0404500-01;Locus_id=Os03g0404500;Note=Hypothetical gene.;Transcript_evidence=AK061614 (DDBJ%2C Best hit),AK098956 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-033-B11,J013063P03;Expression=AK061614;TENOR=Os03t0404500-01;KEGG=Os03t0404500-01
Chr03	irgsp1_rep	CDS	16529003	16529305	.	+	0	Parent=Os03t0404500-01
Chr03	irgsp1_rep	three_prime_UTR	16529306	16529478	.	+	.	Parent=Os03t0404500-01
Chr03	irgsp1_rep	mRNA	16550179	16553574	.	-	.	ID=Os03t0404650-01;Name=Os03t0404650-01;Locus_id=Os03g0404650;Note=Non-protein coding transcript.;Transcript_evidence=AK288639 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090055O12;TENOR=Os03t0404650-01
Chr03	irgsp1_rep	exon	16550179	16553574	.	-	.	Parent=Os03t0404650-01
Chr03	irgsp1_rep	mRNA	16551354	16561430	.	+	.	ID=Os03t0404800-01;Name=Os03t0404800-01;Locus_id=Os03g0404800;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK099537 (DDBJ%2C Best hit);ORF_evidence=Q10JX3 (UniProt);GO=Biological Process: steroid biosynthetic process (GO:0006694),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: 3-beta-hydroxy-delta5-steroid dehydrogenase activity (GO:0003854),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616);InterPro=3-beta hydroxysteroid dehydrogenase/isomerase (IPR002225),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013032A17;Expression=AK099537;TENOR=Os03t0404800-01;KEGG=Os03t0404800-01 (EC:1.1.1.170)
Chr03	irgsp1_rep	five_prime_UTR	16551354	16551450	.	+	.	Parent=Os03t0404800-01
Chr03	irgsp1_rep	CDS	16551451	16551736	.	+	0	Parent=Os03t0404800-01
Chr03	irgsp1_rep	CDS	16556947	16557036	.	+	2	Parent=Os03t0404800-01
Chr03	irgsp1_rep	CDS	16558196	16558329	.	+	2	Parent=Os03t0404800-01
Chr03	irgsp1_rep	CDS	16559270	16559428	.	+	0	Parent=Os03t0404800-01
Chr03	irgsp1_rep	CDS	16560601	16560723	.	+	0	Parent=Os03t0404800-01
Chr03	irgsp1_rep	CDS	16561131	16561139	.	+	0	Parent=Os03t0404800-01
Chr03	irgsp1_rep	three_prime_UTR	16561140	16561430	.	+	.	Parent=Os03t0404800-01
Chr03	irgsp1_rep	mRNA	16571992	16577673	.	+	.	ID=Os03t0405000-01;Name=Os03t0405000-01;Locus_id=Os03g0405000;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK070839 (DDBJ%2C Best hit);ORF_evidence=NP_001150065.1 (RefSeq);GO=Biological Process: steroid biosynthetic process (GO:0006694),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: endoplasmic reticulum (GO:0005783),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: 3-beta-hydroxy-delta5-steroid dehydrogenase activity (GO:0003854),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616);InterPro=3-beta hydroxysteroid dehydrogenase/isomerase (IPR002225),Reticulon (IPR003388),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023073G11;Expression=AK070839;TENOR=Os03t0405000-01;KEGG=Os03t0405000-01
Chr03	irgsp1_rep	five_prime_UTR	16571992	16572058	.	+	.	Parent=Os03t0405000-01
Chr03	irgsp1_rep	CDS	16572059	16572308	.	+	0	Parent=Os03t0405000-01
Chr03	irgsp1_rep	CDS	16573462	16573551	.	+	2	Parent=Os03t0405000-01
Chr03	irgsp1_rep	CDS	16573895	16574028	.	+	2	Parent=Os03t0405000-01
Chr03	irgsp1_rep	CDS	16574120	16574290	.	+	0	Parent=Os03t0405000-01
Chr03	irgsp1_rep	CDS	16574486	16574608	.	+	0	Parent=Os03t0405000-01
Chr03	irgsp1_rep	CDS	16574684	16574763	.	+	0	Parent=Os03t0405000-01
Chr03	irgsp1_rep	CDS	16576079	16576277	.	+	1	Parent=Os03t0405000-01
Chr03	irgsp1_rep	CDS	16576439	16576535	.	+	0	Parent=Os03t0405000-01
Chr03	irgsp1_rep	CDS	16576624	16576798	.	+	2	Parent=Os03t0405000-01
Chr03	irgsp1_rep	CDS	16576920	16577074	.	+	1	Parent=Os03t0405000-01
Chr03	irgsp1_rep	CDS	16577189	16577257	.	+	2	Parent=Os03t0405000-01
Chr03	irgsp1_rep	CDS	16577351	16577493	.	+	2	Parent=Os03t0405000-01
Chr03	irgsp1_rep	three_prime_UTR	16577494	16577673	.	+	.	Parent=Os03t0405000-01
Chr03	irgsp1_rep	mRNA	16580159	16586153	.	+	.	ID=Os03t0405100-01;Name=Os03t0405100-01;Locus_id=Os03g0405100;Note=Ubiquinone biosynthesis protein COQ9 domain containing protein.;Transcript_evidence=AK108624 (DDBJ%2C Best hit);ORF_evidence=NP_001149911.1 (RefSeq);GO=Biological Process: ubiquinone biosynthetic process (GO:0006744);InterPro=Ubiquinone biosynthesis protein COQ9 (IPR012762),COQ9 (IPR013718);NIAS_FLcDNA=002-147-D11;Expression=AK108624;TENOR=Os03t0405100-01;KEGG=Os03t0405100-01
Chr03	irgsp1_rep	five_prime_UTR	16580159	16580224	.	+	.	Parent=Os03t0405100-01
Chr03	irgsp1_rep	CDS	16580225	16580593	.	+	0	Parent=Os03t0405100-01
Chr03	irgsp1_rep	CDS	16580699	16580806	.	+	0	Parent=Os03t0405100-01
Chr03	irgsp1_rep	CDS	16584427	16584594	.	+	0	Parent=Os03t0405100-01
Chr03	irgsp1_rep	CDS	16584686	16584857	.	+	0	Parent=Os03t0405100-01
Chr03	irgsp1_rep	CDS	16585544	16585617	.	+	2	Parent=Os03t0405100-01
Chr03	irgsp1_rep	CDS	16585716	16585796	.	+	0	Parent=Os03t0405100-01
Chr03	irgsp1_rep	three_prime_UTR	16585797	16586153	.	+	.	Parent=Os03t0405100-01
Chr03	irgsp1_rep	mRNA	16586544	16587292	.	-	.	ID=Os03t0405200-01;Name=Os03t0405200-01;Locus_id=Os03g0405200;Note=Non-protein coding transcript.;Transcript_evidence=AK120256 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013045P19;TENOR=Os03t0405200-01
Chr03	irgsp1_rep	exon	16586544	16587292	.	-	.	Parent=Os03t0405200-01
Chr03	irgsp1_rep	mRNA	16588547	16593603	.	-	.	ID=Os03t0405400-01;Name=Os03t0405400-01;Locus_id=Os03g0405400;Note=Non-protein coding transcript.;Transcript_evidence=AK120358 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013067F13;TENOR=Os03t0405400-01
Chr03	irgsp1_rep	exon	16593476	16593603	.	-	.	Parent=Os03t0405400-01
Chr03	irgsp1_rep	exon	16588547	16593321	.	-	.	Parent=Os03t0405400-01
Chr03	irgsp1_rep	mRNA	16590192	16595911	.	+	.	ID=Os03t0405500-01;Name=Os03t0405500-01;Locus_id=Os03g0405500;Note=Similar to PDI-like protein.;Transcript_evidence=AK069583 (DDBJ%2C Best hit);ORF_evidence=Q7Y0E8 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: antioxidant activity (GO:0016209),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: protein-disulfide reductase activity (GO:0047134);InterPro=Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant (IPR000866),C1-like (IPR011424),Thioredoxin-like fold (IPR012336),Thioredoxin%2C conserved site (IPR017937);NIAS_FLcDNA=J023022B19;Expression=AK069583;TENOR=Os03t0405500-01;KEGG=Os03t0405500-01
Chr03	irgsp1_rep	five_prime_UTR	16590192	16590270	.	+	.	Parent=Os03t0405500-01
Chr03	irgsp1_rep	CDS	16590271	16590348	.	+	0	Parent=Os03t0405500-01
Chr03	irgsp1_rep	CDS	16593499	16593984	.	+	0	Parent=Os03t0405500-01
Chr03	irgsp1_rep	CDS	16594070	16594558	.	+	0	Parent=Os03t0405500-01
Chr03	irgsp1_rep	CDS	16594988	16595644	.	+	0	Parent=Os03t0405500-01
Chr03	irgsp1_rep	three_prime_UTR	16595645	16595911	.	+	.	Parent=Os03t0405500-01
Chr03	irgsp1_rep	mRNA	16594185	16595900	.	+	.	ID=Os03t0405500-02;Name=Os03t0405500-02;Locus_id=Os03g0405500;Note=Hypothetical conserved gene.;Transcript_evidence=AK104893 (DDBJ%2C Best hit);ORF_evidence=A2XHT7 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: antioxidant activity (GO:0016209),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: protein-disulfide reductase activity (GO:0047134);InterPro=Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant (IPR000866),C1-like (IPR011424),Thioredoxin-like fold (IPR012336),Thioredoxin%2C conserved site (IPR017937);NIAS_FLcDNA=001-045-F03;Expression=AK104893;TENOR=Os03t0405500-02;KEGG=Os03t0405500-02
Chr03	irgsp1_rep	five_prime_UTR	16594185	16594186	.	+	.	Parent=Os03t0405500-02
Chr03	irgsp1_rep	CDS	16594187	16594558	.	+	0	Parent=Os03t0405500-02
Chr03	irgsp1_rep	CDS	16594988	16595644	.	+	0	Parent=Os03t0405500-02
Chr03	irgsp1_rep	three_prime_UTR	16595645	16595900	.	+	.	Parent=Os03t0405500-02
Chr03	irgsp1_rep	mRNA	16593756	16595071	.	-	.	ID=Os03t0405525-00;Name=Os03t0405525-00;Locus_id=Os03g0405525;Note=Non-protein coding transcript.;Transcript_evidence=DQ417496 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0405525-00
Chr03	irgsp1_rep	exon	16594967	16595071	.	-	.	Parent=Os03t0405525-00
Chr03	irgsp1_rep	exon	16594066	16594537	.	-	.	Parent=Os03t0405525-00
Chr03	irgsp1_rep	exon	16593756	16593980	.	-	.	Parent=Os03t0405525-00
Chr03	irgsp1_rep	mRNA	16599317	16600499	.	+	.	ID=Os03t0405550-00;Name=Os03t0405550-00;Locus_id=Os03g0405550;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001173468.1 (RefSeq);TENOR=Os03t0405550-00
Chr03	irgsp1_rep	CDS	16599317	16599784	.	+	0	Parent=Os03t0405550-00
Chr03	irgsp1_rep	CDS	16600488	16600499	.	+	0	Parent=Os03t0405550-00
Chr03	irgsp1_rep	mRNA	16628549	16632054	.	+	.	ID=Os03t0405900-01;Name=Os03t0405900-01;Locus_id=Os03g0405900;Note=Hypothetical conserved gene.;Transcript_evidence=AK243686 (DDBJ%2C Best hit);ORF_evidence=Q7Y0F2 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: antioxidant activity (GO:0016209),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: protein-disulfide reductase activity (GO:0047134);InterPro=Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant (IPR000866),C1-like (IPR011424),Thioredoxin-like fold (IPR012336),Thioredoxin%2C conserved site (IPR017937);NIAS_FLcDNA=J100090N13;TENOR=Os03t0405900-01;KEGG=Os03t0405900-01
Chr03	irgsp1_rep	five_prime_UTR	16628549	16628615	.	+	.	Parent=Os03t0405900-01
Chr03	irgsp1_rep	CDS	16628616	16628714	.	+	0	Parent=Os03t0405900-01
Chr03	irgsp1_rep	CDS	16629435	16629920	.	+	0	Parent=Os03t0405900-01
Chr03	irgsp1_rep	CDS	16630013	16630501	.	+	0	Parent=Os03t0405900-01
Chr03	irgsp1_rep	CDS	16631129	16631800	.	+	0	Parent=Os03t0405900-01
Chr03	irgsp1_rep	three_prime_UTR	16631801	16632054	.	+	.	Parent=Os03t0405900-01
Chr03	irgsp1_rep	mRNA	16629692	16631212	.	-	.	ID=Os03t0406001-00;Name=Os03t0406001-00;Locus_id=Os03g0406001;Note=Non-protein coding transcript.;Transcript_evidence=DQ417496 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0406001-00
Chr03	irgsp1_rep	exon	16631126	16631212	.	-	.	Parent=Os03t0406001-00
Chr03	irgsp1_rep	exon	16630009	16630498	.	-	.	Parent=Os03t0406001-00
Chr03	irgsp1_rep	exon	16629692	16629924	.	-	.	Parent=Os03t0406001-00
Chr03	irgsp1_rep	mRNA	16645244	16646434	.	+	.	ID=Os03t0406100-01;Name=Os03t0406100-01;Locus_id=Os03g0406100;RAP-DB Gene Symbol Synonym(s)=OsSPX5;RAP-DB Gene Name Synonym(s)=SPX (SYG/PHO81/XPR1) domain gene 5;CGSNL Gene Symbol=SPX5;CGSNL Gene Name=SPX DOMAIN PROTEIN 5;Oryzabase Gene Symbol Synonym(s)=OsSPX5;Oryzabase Gene Name Synonym(s)=SPX (SYG/PHO81/XPR1) domain gene 5%2C SPX domain protein 5;Note=SPX domain-containing protein%2C Negative regulation of phosphate signaling%2C Pi homeostasis;Transcript_evidence=KF267997;ORF_evidence=Q7Y0F6;GO=Biological Process: cellular response to phosphate starvation (GO:0016036);InterPro=SPX domain-containing protein (IPR031142),SPX domain (IPR004331);Manual Curation=July 6%2C 2015;Literature_PMID=24368504,19566645;Oryzabase=11156;TENOR=Os03t0406100-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	16645244	16645315	.	+	.	Parent=Os03t0406100-01
Chr03	irgsp1_rep	CDS	16645316	16645534	.	+	0	Parent=Os03t0406100-01
Chr03	irgsp1_rep	CDS	16645624	16646148	.	+	0	Parent=Os03t0406100-01
Chr03	irgsp1_rep	three_prime_UTR	16646149	16646434	.	+	.	Parent=Os03t0406100-01
Chr03	irgsp1_rep	mRNA	16654335	16658094	.	+	.	ID=Os03t0406200-01;Name=Os03t0406200-01;Locus_id=Os03g0406200;CGSNL Gene Symbol=EEF1B2;CGSNL Gene Name=EUKARYOTIC ELONGATION FACTOR 1-BETA2;Oryzabase Gene Symbol Synonym(s)=eEF-1beta2%2C EF-1beta2;Oryzabase Gene Name Synonym(s)=elongation factor 1 beta2%2C translation elongation factor-1Beta subunit isoform 2;Note=Elongation factor 1 beta 2.;Transcript_evidence=AK059914 (DDBJ%2C Best hit);ORF_evidence=NP_001149753.1 (RefSeq);GO=Biological Process: translational elongation (GO:0006414),Cellular Component: eukaryotic translation elongation factor 1 complex (GO:0005853),Molecular Function: translation elongation factor activity (GO:0003746);InterPro=Translation elongation factor EF1B%2C beta/delta chains%2C conserved site (IPR001326),Translation elongation factor EF1B%2C beta/delta subunit%2C guanine nucleotide exchange (IPR014038),Translation elongation factor EF1B/ribosomal protein S6 (IPR014717);NIAS_FLcDNA=006-209-E04;Oryzabase=15715;Expression=AK059914;TENOR=Os03t0406200-01;KEGG=Os03t0406200-01
Chr03	irgsp1_rep	five_prime_UTR	16654335	16654454	.	+	.	Parent=Os03t0406200-01
Chr03	irgsp1_rep	CDS	16655193	16655278	.	+	0	Parent=Os03t0406200-01
Chr03	irgsp1_rep	CDS	16655367	16655483	.	+	1	Parent=Os03t0406200-01
Chr03	irgsp1_rep	CDS	16655577	16655652	.	+	1	Parent=Os03t0406200-01
Chr03	irgsp1_rep	CDS	16655873	16655996	.	+	0	Parent=Os03t0406200-01
Chr03	irgsp1_rep	CDS	16656660	16656773	.	+	2	Parent=Os03t0406200-01
Chr03	irgsp1_rep	CDS	16656878	16657039	.	+	2	Parent=Os03t0406200-01
Chr03	irgsp1_rep	CDS	16657923	16657924	.	+	2	Parent=Os03t0406200-01
Chr03	irgsp1_rep	three_prime_UTR	16657925	16658094	.	+	.	Parent=Os03t0406200-01
Chr03	irgsp1_rep	mRNA	16654366	16658086	.	+	.	ID=Os03t0406200-02;Name=Os03t0406200-02;Locus_id=Os03g0406200;CGSNL Gene Symbol=EEF1B2;CGSNL Gene Name=EUKARYOTIC ELONGATION FACTOR 1-BETA2;Oryzabase Gene Symbol Synonym(s)=eEF-1beta2%2C EF-1beta2;Oryzabase Gene Name Synonym(s)=elongation factor 1 beta2%2C translation elongation factor-1Beta subunit isoform 2;Note=Elongation factor 1 beta 2.;Transcript_evidence=AK073405 (DDBJ%2C Best hit);ORF_evidence=NP_001149753.1 (RefSeq);GO=Biological Process: translational elongation (GO:0006414),Cellular Component: eukaryotic translation elongation factor 1 complex (GO:0005853),Molecular Function: translation elongation factor activity (GO:0003746);InterPro=Translation elongation factor EF1B%2C beta/delta chains%2C conserved site (IPR001326),Translation elongation factor EF1B%2C beta/delta subunit%2C guanine nucleotide exchange (IPR014038),Translation elongation factor EF1B/ribosomal protein S6 (IPR014717);NIAS_FLcDNA=J033042N03;Oryzabase=15715;Expression=AK073405;TENOR=Os03t0406200-02;KEGG=Os03t0406200-02
Chr03	irgsp1_rep	five_prime_UTR	16654366	16654454	.	+	.	Parent=Os03t0406200-02
Chr03	irgsp1_rep	CDS	16655193	16655278	.	+	0	Parent=Os03t0406200-02
Chr03	irgsp1_rep	CDS	16655367	16655483	.	+	1	Parent=Os03t0406200-02
Chr03	irgsp1_rep	CDS	16655577	16655652	.	+	1	Parent=Os03t0406200-02
Chr03	irgsp1_rep	CDS	16655873	16655996	.	+	0	Parent=Os03t0406200-02
Chr03	irgsp1_rep	CDS	16656660	16656773	.	+	2	Parent=Os03t0406200-02
Chr03	irgsp1_rep	CDS	16656878	16657039	.	+	2	Parent=Os03t0406200-02
Chr03	irgsp1_rep	CDS	16657923	16657924	.	+	2	Parent=Os03t0406200-02
Chr03	irgsp1_rep	three_prime_UTR	16657925	16658086	.	+	.	Parent=Os03t0406200-02
Chr03	irgsp1_rep	mRNA	16658131	16658813	.	+	.	ID=Os03t0406250-00;Name=Os03t0406250-00;Locus_id=Os03g0406250;Note=Non-protein coding transcript.;Transcript_evidence=CT835204 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os03t0406250-00
Chr03	irgsp1_rep	exon	16658131	16658813	.	+	.	Parent=Os03t0406250-00
Chr03	irgsp1_rep	mRNA	16692517	16696367	.	+	.	ID=Os03t0406900-01;Name=Os03t0406900-01;Locus_id=Os03g0406900;Note=Similar to predicted protein.;Transcript_evidence=AK241839 (DDBJ%2C Best hit);ORF_evidence=O49309 (UniProt);InterPro=Protein of unknown function DUF300 (IPR005178);NIAS_FLcDNA=J065213L07;TENOR=Os03t0406900-01;KEGG=Os03t0406900-01
Chr03	irgsp1_rep	five_prime_UTR	16692517	16692664	.	+	.	Parent=Os03t0406900-01
Chr03	irgsp1_rep	five_prime_UTR	16692985	16693053	.	+	.	Parent=Os03t0406900-01
Chr03	irgsp1_rep	CDS	16693054	16693206	.	+	0	Parent=Os03t0406900-01
Chr03	irgsp1_rep	CDS	16693361	16693417	.	+	0	Parent=Os03t0406900-01
Chr03	irgsp1_rep	CDS	16693737	16693845	.	+	0	Parent=Os03t0406900-01
Chr03	irgsp1_rep	CDS	16694014	16694198	.	+	2	Parent=Os03t0406900-01
Chr03	irgsp1_rep	CDS	16694280	16694368	.	+	0	Parent=Os03t0406900-01
Chr03	irgsp1_rep	CDS	16695013	16695262	.	+	1	Parent=Os03t0406900-01
Chr03	irgsp1_rep	CDS	16695571	16695810	.	+	0	Parent=Os03t0406900-01
Chr03	irgsp1_rep	CDS	16695897	16696205	.	+	0	Parent=Os03t0406900-01
Chr03	irgsp1_rep	three_prime_UTR	16696206	16696367	.	+	.	Parent=Os03t0406900-01
Chr03	irgsp1_rep	mRNA	16696295	16700996	.	-	.	ID=Os03t0407000-01;Name=Os03t0407000-01;Locus_id=Os03g0407000;Note=von Willebrand factor%2C type A domain containing protein.;Transcript_evidence=AK062571 (DDBJ%2C Best hit);ORF_evidence=Q10JU9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=von Willebrand factor%2C type A (IPR002035);NIAS_FLcDNA=001-046-C06;Expression=AK062571;TENOR=Os03t0407000-01;KEGG=Os03t0407000-01
Chr03	irgsp1_rep	five_prime_UTR	16700995	16700996	.	-	.	Parent=Os03t0407000-01
Chr03	irgsp1_rep	CDS	16700914	16700994	.	-	0	Parent=Os03t0407000-01
Chr03	irgsp1_rep	CDS	16700669	16700825	.	-	0	Parent=Os03t0407000-01
Chr03	irgsp1_rep	CDS	16700239	16700316	.	-	2	Parent=Os03t0407000-01
Chr03	irgsp1_rep	CDS	16699870	16699970	.	-	2	Parent=Os03t0407000-01
Chr03	irgsp1_rep	CDS	16699217	16699387	.	-	0	Parent=Os03t0407000-01
Chr03	irgsp1_rep	CDS	16698248	16698322	.	-	0	Parent=Os03t0407000-01
Chr03	irgsp1_rep	CDS	16697554	16697640	.	-	0	Parent=Os03t0407000-01
Chr03	irgsp1_rep	CDS	16696499	16696831	.	-	0	Parent=Os03t0407000-01
Chr03	irgsp1_rep	three_prime_UTR	16696295	16696498	.	-	.	Parent=Os03t0407000-01
Chr03	irgsp1_rep	mRNA	16696508	16704564	.	+	.	ID=Os03t0407050-00;Name=Os03t0407050-00;Locus_id=Os03g0407050;Note=Hypothetical protein.;Transcript_evidence=tplb0058a20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0407050-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	16696508	16696574	.	+	.	Parent=Os03t0407050-00
Chr03	irgsp1_rep	CDS	16696575	16696807	.	+	0	Parent=Os03t0407050-00
Chr03	irgsp1_rep	CDS	16697531	16697591	.	+	1	Parent=Os03t0407050-00
Chr03	irgsp1_rep	three_prime_UTR	16697592	16697616	.	+	.	Parent=Os03t0407050-00
Chr03	irgsp1_rep	three_prime_UTR	16698223	16698320	.	+	.	Parent=Os03t0407050-00
Chr03	irgsp1_rep	three_prime_UTR	16699215	16699385	.	+	.	Parent=Os03t0407050-00
Chr03	irgsp1_rep	three_prime_UTR	16699868	16699969	.	+	.	Parent=Os03t0407050-00
Chr03	irgsp1_rep	three_prime_UTR	16700238	16700321	.	+	.	Parent=Os03t0407050-00
Chr03	irgsp1_rep	three_prime_UTR	16700673	16700798	.	+	.	Parent=Os03t0407050-00
Chr03	irgsp1_rep	three_prime_UTR	16700885	16701181	.	+	.	Parent=Os03t0407050-00
Chr03	irgsp1_rep	three_prime_UTR	16701544	16701656	.	+	.	Parent=Os03t0407050-00
Chr03	irgsp1_rep	three_prime_UTR	16702420	16702515	.	+	.	Parent=Os03t0407050-00
Chr03	irgsp1_rep	three_prime_UTR	16702593	16702804	.	+	.	Parent=Os03t0407050-00
Chr03	irgsp1_rep	three_prime_UTR	16702917	16703063	.	+	.	Parent=Os03t0407050-00
Chr03	irgsp1_rep	three_prime_UTR	16704099	16704564	.	+	.	Parent=Os03t0407050-00
Chr03	irgsp1_rep	mRNA	16715256	16715939	.	+	.	ID=Os03t0407100-00;Name=Os03t0407100-00;Locus_id=Os03g0407100;Note=Protein of unknown function DUF1677%2C plant family protein.;Transcript_evidence=EU951880 (DDBJ);ORF_evidence=NP_001173469.1 (RefSeq);InterPro=Protein of unknown function DUF1677%2C plant (IPR012876);TENOR=Os03t0407100-00;KEGG=Os03t0407100-00
Chr03	irgsp1_rep	five_prime_UTR	16715256	16715426	.	+	.	Parent=Os03t0407100-00
Chr03	irgsp1_rep	CDS	16715427	16715939	.	+	0	Parent=Os03t0407100-00
Chr03	irgsp1_rep	mRNA	16729501	16735109	.	-	.	ID=Os03t0407400-01;Name=Os03t0407400-01;Locus_id=Os03g0407400;RAP-DB Gene Symbol Synonym(s)=GS3;RAP-DB Gene Name Synonym(s)=grain size 3;CGSNL Gene Symbol=LK3;CGSNL Gene Name=LONG KERNEL 3;Oryzabase Gene Symbol Synonym(s)=lk3(t)%2C lk3(t)*%2C SG3%2C GS3%2C SG3-GS3%2C OsGW3%2C OsGS3%2C RGG3/GS3/Mi/OsGGC1%2C RGG3%2C Mi%2C OsGGC1%2C GGC1;Oryzabase Gene Name Synonym(s)=long kernel 3%2C long kernel-3%2C grain size%2C grain length and weight protein%2C GRAIN SIZE 3%2C G gamma subunit GS3%2C Heterotrimeric G Protein gamma3 Subunit;Note=Protein with plant-specific organ size regulation (OSR) domain%2C transmembrane region%2C TNFR/NGFR family cysteine-rich domain and VWFC module%2C Regulator of grain size and organ size;Transcript_evidence=AB488612;ORF_evidence=C6L686;GO=Biological Process: G-protein coupled receptor signaling pathway (GO:0007186),Molecular Function: signal transducer activity (GO:0004871),Cellular Component: heterotrimeric G-protein complex (GO:0005834);InterPro=G-protein gamma-like domain (IPR015898);Manual Curation=October 5%2C 2017;Literature_PMID=20974950,19506305,16453132;Oryzabase=2135;TENOR=Os03t0407400-00;KEGG=Os03t0407400-00
Chr03	irgsp1_rep	five_prime_UTR	16735078	16735109	.	-	.	Parent=Os03t0407400-01
Chr03	irgsp1_rep	CDS	16734961	16735077	.	-	0	Parent=Os03t0407400-01
Chr03	irgsp1_rep	CDS	16733436	16733488	.	-	0	Parent=Os03t0407400-01
Chr03	irgsp1_rep	CDS	16731953	16731997	.	-	1	Parent=Os03t0407400-01
Chr03	irgsp1_rep	CDS	16731816	16731869	.	-	1	Parent=Os03t0407400-01
Chr03	irgsp1_rep	CDS	16729715	16730144	.	-	1	Parent=Os03t0407400-01
Chr03	irgsp1_rep	three_prime_UTR	16729501	16729714	.	-	.	Parent=Os03t0407400-01
Chr03	irgsp1_rep	mRNA	16749318	16754223	.	-	.	ID=Os03t0407900-01;Name=Os03t0407900-01;Locus_id=Os03g0407900;CGSNL Gene Symbol=RLCK110;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 110;Oryzabase Gene Symbol Synonym(s)=OsRLCK110%2C PTK5%2C OsPTK5;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 110%2C Protein Tyrosine Kinase 5;Note=Similar to Serine/threonine protein kinase-like.;Transcript_evidence=AK068330 (DDBJ%2C Best hit);ORF_evidence=Q84QD9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J013145E01;Oryzabase=18818;Expression=AK068330;TENOR=Os03t0407900-01;KEGG=Os03t0407900-01
Chr03	irgsp1_rep	five_prime_UTR	16754056	16754223	.	-	.	Parent=Os03t0407900-01
Chr03	irgsp1_rep	CDS	16753474	16754055	.	-	0	Parent=Os03t0407900-01
Chr03	irgsp1_rep	CDS	16753228	16753363	.	-	0	Parent=Os03t0407900-01
Chr03	irgsp1_rep	CDS	16750696	16750832	.	-	2	Parent=Os03t0407900-01
Chr03	irgsp1_rep	CDS	16750178	16750301	.	-	0	Parent=Os03t0407900-01
Chr03	irgsp1_rep	CDS	16749506	16750029	.	-	2	Parent=Os03t0407900-01
Chr03	irgsp1_rep	three_prime_UTR	16749318	16749505	.	-	.	Parent=Os03t0407900-01
Chr03	irgsp1_rep	mRNA	16749739	16753479	.	+	.	ID=Os03t0408101-00;Name=Os03t0408101-00;Locus_id=Os03g0408101;Note=Hypothetical protein.;Transcript_evidence=tplb0023d22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0408101-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	16749739	16750094	.	+	.	Parent=Os03t0408101-00
Chr03	irgsp1_rep	five_prime_UTR	16750148	16750295	.	+	.	Parent=Os03t0408101-00
Chr03	irgsp1_rep	five_prime_UTR	16750580	16751162	.	+	.	Parent=Os03t0408101-00
Chr03	irgsp1_rep	CDS	16751163	16751262	.	+	0	Parent=Os03t0408101-00
Chr03	irgsp1_rep	CDS	16753236	16753390	.	+	2	Parent=Os03t0408101-00
Chr03	irgsp1_rep	three_prime_UTR	16753391	16753479	.	+	.	Parent=Os03t0408101-00
Chr03	irgsp1_rep	mRNA	16787183	16787911	.	+	.	ID=Os03t0408300-00;Name=Os03t0408300-00;Locus_id=Os03g0408300;Note=Similar to 60S ribosomal protein L27a-3.;Transcript_evidence=FP096475 (DDBJ);ORF_evidence=B4G0Z5 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L15%2C conserved site (IPR001196),Ribosomal protein L18e/L15P (IPR021131);TENOR=Os03t0408300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	16787183	16787248	.	+	.	Parent=Os03t0408300-00
Chr03	irgsp1_rep	CDS	16787249	16787689	.	+	0	Parent=Os03t0408300-00
Chr03	irgsp1_rep	three_prime_UTR	16787690	16787911	.	+	.	Parent=Os03t0408300-00
Chr03	irgsp1_rep	mRNA	16788230	16789167	.	+	.	ID=Os03t0408401-00;Name=Os03t0408401-00;Locus_id=Os03g0408401;Note=Non-protein coding transcript.;Transcript_evidence=FP096267 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0408401-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	exon	16788230	16788450	.	+	.	Parent=Os03t0408401-00
Chr03	irgsp1_rep	exon	16788505	16789167	.	+	.	Parent=Os03t0408401-00
Chr03	irgsp1_rep	mRNA	16794238	16799483	.	+	.	ID=Os03t0408500-01;Name=Os03t0408500-01;Locus_id=Os03g0408500;Note=Similar to Transcription initiation factor IID%2C 31kD subunit family protein%2C expressed.;Transcript_evidence=AK287642 (DDBJ%2C Best hit),AK287879 (DDBJ%2C Best hit);ORF_evidence=Q10JT5 (UniProt);GO=Biological Process: transcription initiation%2C DNA-dependent (GO:0006352),Molecular Function: DNA binding (GO:0003677);InterPro=Transcription factor TAFII-31 (IPR003162),Histone-fold (IPR009072);NIAS_FLcDNA=J065079D24,J065205P07;TENOR=Os03t0408500-01
Chr03	irgsp1_rep	five_prime_UTR	16794238	16794306	.	+	.	Parent=Os03t0408500-01
Chr03	irgsp1_rep	CDS	16794307	16794645	.	+	0	Parent=Os03t0408500-01
Chr03	irgsp1_rep	CDS	16798629	16798964	.	+	0	Parent=Os03t0408500-01
Chr03	irgsp1_rep	three_prime_UTR	16798965	16799483	.	+	.	Parent=Os03t0408500-01
Chr03	irgsp1_rep	mRNA	16804298	16805869	.	-	.	ID=Os03t0408600-01;Name=Os03t0408600-01;Locus_id=Os03g0408600;RAP-DB Gene Symbol Synonym(s)=NSP1%2C Os NSP1%2C NSP1;RAP-DB Gene Name Synonym(s)=NODULATION SIGNALING PATHWAY 1%2C NODULATION SIGNALING PATHWAY1%2C Symbiotic GRAS-Type Transcription Factor NSP1;CGSNL Gene Symbol=NSP1;CGSNL Gene Name=NODULATION SIGNALING PATHWAY 1;Oryzabase Gene Symbol Synonym(s)=Os NSP1%2C OsNSP1%2C OsGRAS-14%2C OsGRAS14%2C GRAS-14%2C GRAS14;Oryzabase Gene Name Synonym(s)=NODULATION SIGNALING PATHWAY1%2C Symbiotic GRAS-Type Transcription Factor NSP1%2C GRAS protein 14;Note=GRAS-domain transcription factor%2C Strigolactone (SL) biosynthesis;Transcript_evidence=Inferred from literature;ORF_evidence=Q84MQ9;InterPro=Transcription factor GRAS (IPR005202);Manual Curation=September 26%2C 2014;Literature_PMID=22039214,20719766;Oryzabase=9724;TENOR=Os03t0408600-00
Chr03	irgsp1_rep	CDS	16804298	16805869	.	-	0	Parent=Os03t0408600-01
Chr03	irgsp1_rep	mRNA	16836837	16840754	.	-	.	ID=Os03t0409100-01;Name=Os03t0409100-01;Locus_id=Os03g0409100;Note=Hypothetical conserved gene.;Transcript_evidence=AK073459 (DDBJ%2C Best hit);ORF_evidence=B8AJQ1 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: ATP-dependent peptidase activity (GO:0004176);InterPro=Peptidase S16%2C lon N-terminal (IPR003111),PUA-like domain (IPR015947);NIAS_FLcDNA=J033040L10;Expression=AK073459;TENOR=Os03t0409100-01;KEGG=Os03t0409100-01
Chr03	irgsp1_rep	five_prime_UTR	16837981	16840754	.	-	.	Parent=Os03t0409100-01
Chr03	irgsp1_rep	CDS	16837063	16837980	.	-	0	Parent=Os03t0409100-01
Chr03	irgsp1_rep	three_prime_UTR	16836837	16837062	.	-	.	Parent=Os03t0409100-01
Chr03	irgsp1_rep	mRNA	16836779	16839212	.	-	.	ID=Os03t0409100-02;Name=Os03t0409100-02;Locus_id=Os03g0409100;Note=Hypothetical conserved gene.;Transcript_evidence=AK105845 (DDBJ%2C Best hit);ORF_evidence=B8AJQ1 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: ATP-dependent peptidase activity (GO:0004176);InterPro=Peptidase S16%2C lon N-terminal (IPR003111),PUA-like domain (IPR015947);NIAS_FLcDNA=001-203-G03;Expression=AK105845;TENOR=Os03t0409100-02;KEGG=Os03t0409100-02
Chr03	irgsp1_rep	five_prime_UTR	16838890	16839212	.	-	.	Parent=Os03t0409100-02
Chr03	irgsp1_rep	five_prime_UTR	16837981	16838029	.	-	.	Parent=Os03t0409100-02
Chr03	irgsp1_rep	CDS	16837063	16837980	.	-	0	Parent=Os03t0409100-02
Chr03	irgsp1_rep	three_prime_UTR	16836779	16837062	.	-	.	Parent=Os03t0409100-02
Chr03	irgsp1_rep	mRNA	16836622	16839055	.	-	.	ID=Os03t0409100-03;Name=Os03t0409100-03;Locus_id=Os03g0409100;Note=PUA-like domain domain containing protein.;Transcript_evidence=AK120517 (DDBJ%2C Best hit);ORF_evidence=Q75K52 (UniProt);InterPro=PUA-like domain (IPR015947);NIAS_FLcDNA=J013124C05;Expression=AK120517;TENOR=Os03t0409100-03;KEGG=Os03t0409100-03
Chr03	irgsp1_rep	five_prime_UTR	16837981	16839055	.	-	.	Parent=Os03t0409100-03
Chr03	irgsp1_rep	CDS	16837578	16837980	.	-	0	Parent=Os03t0409100-03
Chr03	irgsp1_rep	CDS	16837043	16837107	.	-	2	Parent=Os03t0409100-03
Chr03	irgsp1_rep	three_prime_UTR	16836622	16837042	.	-	.	Parent=Os03t0409100-03
Chr03	irgsp1_rep	mRNA	16856520	16862685	.	-	.	ID=Os03t0409400-00;Name=Os03t0409400-00;Locus_id=Os03g0409400;Note=Similar to mps one binder kinase activator-like 1A.;Transcript_evidence=FP094672 (DDBJ);ORF_evidence=NP_001149189.1 (RefSeq);InterPro=Mob1/phocein (IPR005301);TENOR=Os03t0409400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	16862557	16862685	.	-	0	Parent=Os03t0409400-00
Chr03	irgsp1_rep	CDS	16861574	16861682	.	-	0	Parent=Os03t0409400-00
Chr03	irgsp1_rep	CDS	16858387	16858509	.	-	2	Parent=Os03t0409400-00
Chr03	irgsp1_rep	CDS	16857500	16857634	.	-	2	Parent=Os03t0409400-00
Chr03	irgsp1_rep	CDS	16857188	16857351	.	-	2	Parent=Os03t0409400-00
Chr03	irgsp1_rep	CDS	16856521	16856598	.	-	0	Parent=Os03t0409400-00
Chr03	irgsp1_rep	three_prime_UTR	16856520	16856520	.	-	.	Parent=Os03t0409400-00
Chr03	irgsp1_rep	mRNA	16857192	16861667	.	+	.	ID=Os03t0409500-00;Name=Os03t0409500-00;Locus_id=Os03g0409500;Note=Hypothetical protein.;Transcript_evidence=BT016208 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0409500-00
Chr03	irgsp1_rep	five_prime_UTR	16857192	16857226	.	+	.	Parent=Os03t0409500-00
Chr03	irgsp1_rep	CDS	16857227	16857361	.	+	0	Parent=Os03t0409500-00
Chr03	irgsp1_rep	CDS	16857512	16857623	.	+	0	Parent=Os03t0409500-00
Chr03	irgsp1_rep	CDS	16858402	16858501	.	+	2	Parent=Os03t0409500-00
Chr03	irgsp1_rep	CDS	16861569	16861667	.	+	1	Parent=Os03t0409500-00
Chr03	irgsp1_rep	mRNA	16866702	16869195	.	+	.	ID=Os03t0409600-01;Name=Os03t0409600-01;Locus_id=Os03g0409600;Note=Conserved hypothetical protein.;Transcript_evidence=AK241341 (DDBJ%2C Best hit);ORF_evidence=NP_001173471.1 (RefSeq);NIAS_FLcDNA=J065147C23;TENOR=Os03t0409600-01;KEGG=Os03t0409600-01
Chr03	irgsp1_rep	five_prime_UTR	16866702	16867028	.	+	.	Parent=Os03t0409600-01
Chr03	irgsp1_rep	five_prime_UTR	16867211	16867326	.	+	.	Parent=Os03t0409600-01
Chr03	irgsp1_rep	five_prime_UTR	16867465	16867533	.	+	.	Parent=Os03t0409600-01
Chr03	irgsp1_rep	five_prime_UTR	16867867	16868168	.	+	.	Parent=Os03t0409600-01
Chr03	irgsp1_rep	CDS	16868169	16868369	.	+	0	Parent=Os03t0409600-01
Chr03	irgsp1_rep	CDS	16868959	16869048	.	+	0	Parent=Os03t0409600-01
Chr03	irgsp1_rep	three_prime_UTR	16869049	16869195	.	+	.	Parent=Os03t0409600-01
Chr03	irgsp1_rep	mRNA	16879444	16880815	.	-	.	ID=Os03t0410000-01;Name=Os03t0410000-01;Locus_id=Os03g0410000;Oryzabase Gene Symbol Synonym(s)=OsMyb3%2C OSMYB3%2C MYB3;Oryzabase Gene Name Synonym(s)=myb transcription factor 3%2C transcription factor MYB3;Note=Conserved hypothetical protein.;Transcript_evidence=AK110683 (DDBJ%2C Best hit);ORF_evidence=Q84Z79 (UniProt);NIAS_FLcDNA=002-169-H06;Oryzabase=10246;TENOR=Os03t0410000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	16880731	16880815	.	-	.	Parent=Os03t0410000-01
Chr03	irgsp1_rep	CDS	16880608	16880730	.	-	0	Parent=Os03t0410000-01
Chr03	irgsp1_rep	three_prime_UTR	16879444	16880607	.	-	.	Parent=Os03t0410000-01
Chr03	irgsp1_rep	mRNA	16888652	16892606	.	+	.	ID=Os03t0410100-01;Name=Os03t0410100-01;Locus_id=Os03g0410100;CGSNL Gene Symbol=ELS2;CGSNL Gene Name=ESD4-LIKE SUMO PROTEASE 2;Oryzabase Gene Symbol Synonym(s)=OsELS2;Oryzabase Gene Name Synonym(s)=SUMO protease protein;Note=Similar to cDNA clone:J033024M21%2C full insert sequence.;Transcript_evidence=AK243379 (DDBJ%2C Best hit);ORF_evidence=Q10LL2 (UniProt);NIAS_FLcDNA=J100063A16;Oryzabase=20943;TENOR=Os03t0410100-01;KEGG=Os03t0410100-01
Chr03	irgsp1_rep	five_prime_UTR	16888652	16888875	.	+	.	Parent=Os03t0410100-01
Chr03	irgsp1_rep	CDS	16888876	16889343	.	+	0	Parent=Os03t0410100-01
Chr03	irgsp1_rep	CDS	16889679	16889758	.	+	0	Parent=Os03t0410100-01
Chr03	irgsp1_rep	CDS	16889851	16889977	.	+	1	Parent=Os03t0410100-01
Chr03	irgsp1_rep	three_prime_UTR	16889978	16889995	.	+	.	Parent=Os03t0410100-01
Chr03	irgsp1_rep	three_prime_UTR	16890089	16890187	.	+	.	Parent=Os03t0410100-01
Chr03	irgsp1_rep	three_prime_UTR	16890766	16891057	.	+	.	Parent=Os03t0410100-01
Chr03	irgsp1_rep	three_prime_UTR	16891538	16891641	.	+	.	Parent=Os03t0410100-01
Chr03	irgsp1_rep	three_prime_UTR	16891850	16891922	.	+	.	Parent=Os03t0410100-01
Chr03	irgsp1_rep	three_prime_UTR	16892139	16892246	.	+	.	Parent=Os03t0410100-01
Chr03	irgsp1_rep	three_prime_UTR	16892369	16892606	.	+	.	Parent=Os03t0410100-01
Chr03	irgsp1_rep	mRNA	16920064	16922265	.	-	.	ID=Os03t0410300-01;Name=Os03t0410300-01;Locus_id=Os03g0410300;Oryzabase Gene Symbol Synonym(s)=ELF4_Chr.3;Note=Protein of unknown function DUF1313 family protein.;Transcript_evidence=AK071843 (DDBJ%2C Best hit);ORF_evidence=C5WWN3 (UniProt);InterPro=Protein of unknown function DUF1313 (IPR009741);NIAS_FLcDNA=J023117M08;Oryzabase=19305;Expression=AK071843;TENOR=Os03t0410300-01;KEGG=Os03t0410300-01
Chr03	irgsp1_rep	five_prime_UTR	16922063	16922265	.	-	.	Parent=Os03t0410300-01
Chr03	irgsp1_rep	five_prime_UTR	16920836	16920902	.	-	.	Parent=Os03t0410300-01
Chr03	irgsp1_rep	CDS	16920491	16920835	.	-	0	Parent=Os03t0410300-01
Chr03	irgsp1_rep	three_prime_UTR	16920064	16920490	.	-	.	Parent=Os03t0410300-01
Chr03	irgsp1_rep	mRNA	16920055	16922131	.	-	.	ID=Os03t0410300-02;Name=Os03t0410300-02;Locus_id=Os03g0410300;Oryzabase Gene Symbol Synonym(s)=ELF4_Chr.3;Note=Protein of unknown function DUF1313 family protein.;Transcript_evidence=AK067462 (DDBJ%2C Best hit),AK104174 (DDBJ%2C Best hit);ORF_evidence=C5WWN3 (UniProt);InterPro=Protein of unknown function DUF1313 (IPR009741);NIAS_FLcDNA=J013102C12,006-301-C05;Oryzabase=19305;TENOR=Os03t0410300-02
Chr03	irgsp1_rep	five_prime_UTR	16922063	16922131	.	-	.	Parent=Os03t0410300-02
Chr03	irgsp1_rep	five_prime_UTR	16920836	16920902	.	-	.	Parent=Os03t0410300-02
Chr03	irgsp1_rep	CDS	16920491	16920835	.	-	0	Parent=Os03t0410300-02
Chr03	irgsp1_rep	three_prime_UTR	16920055	16920490	.	-	.	Parent=Os03t0410300-02
Chr03	irgsp1_rep	mRNA	16937595	16940919	.	-	.	ID=Os03t0410700-01;Name=Os03t0410700-01;Locus_id=Os03g0410700;Note=Similar to binding / catalytic.;Transcript_evidence=AK240833 (DDBJ%2C Best hit);ORF_evidence=NP_001031269.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J065015G22;Oryzabase=22062;TENOR=Os03t0410700-01;KEGG=Os03t0410700-01
Chr03	irgsp1_rep	five_prime_UTR	16940837	16940919	.	-	.	Parent=Os03t0410700-01
Chr03	irgsp1_rep	CDS	16940638	16940836	.	-	0	Parent=Os03t0410700-01
Chr03	irgsp1_rep	CDS	16940247	16940333	.	-	2	Parent=Os03t0410700-01
Chr03	irgsp1_rep	CDS	16940097	16940155	.	-	2	Parent=Os03t0410700-01
Chr03	irgsp1_rep	CDS	16939208	16939303	.	-	0	Parent=Os03t0410700-01
Chr03	irgsp1_rep	CDS	16938946	16939026	.	-	0	Parent=Os03t0410700-01
Chr03	irgsp1_rep	CDS	16938630	16938689	.	-	0	Parent=Os03t0410700-01
Chr03	irgsp1_rep	CDS	16938373	16938546	.	-	0	Parent=Os03t0410700-01
Chr03	irgsp1_rep	CDS	16938023	16938118	.	-	0	Parent=Os03t0410700-01
Chr03	irgsp1_rep	CDS	16937848	16937922	.	-	0	Parent=Os03t0410700-01
Chr03	irgsp1_rep	three_prime_UTR	16937595	16937847	.	-	.	Parent=Os03t0410700-01
Chr03	irgsp1_rep	mRNA	16941149	16943327	.	+	.	ID=Os03t0410900-01;Name=Os03t0410900-01;Locus_id=Os03g0410900;Oryzabase Gene Name Synonym(s)=Sm gene%2C Sm family protein;Note=Like-Sm ribonucleoprotein%2C core family protein.;Transcript_evidence=AK243125 (DDBJ%2C Best hit);ORF_evidence=NP_001148720.1 (RefSeq);InterPro=Like-Sm ribonucleoprotein (LSM) domain (IPR001163),Like-Sm ribonucleoprotein (LSM) domain%2C eukaryotic/archaea-type (IPR006649),Like-Sm ribonucleoprotein (LSM)-related domain (IPR010920);NIAS_FLcDNA=J100029F12;Oryzabase=15643;TENOR=Os03t0410900-01;KEGG=Os03t0410900-01
Chr03	irgsp1_rep	five_prime_UTR	16941149	16941218	.	+	.	Parent=Os03t0410900-01
Chr03	irgsp1_rep	CDS	16941219	16941253	.	+	0	Parent=Os03t0410900-01
Chr03	irgsp1_rep	CDS	16941353	16941375	.	+	1	Parent=Os03t0410900-01
Chr03	irgsp1_rep	CDS	16942851	16942972	.	+	2	Parent=Os03t0410900-01
Chr03	irgsp1_rep	CDS	16943096	16943158	.	+	0	Parent=Os03t0410900-01
Chr03	irgsp1_rep	three_prime_UTR	16943159	16943327	.	+	.	Parent=Os03t0410900-01
Chr03	irgsp1_rep	mRNA	16948546	16954701	.	+	.	ID=Os03t0411000-01;Name=Os03t0411000-01;Locus_id=Os03g0411000;Note=Apoptosis inhibitory 5 family protein.;Transcript_evidence=AK120207 (DDBJ%2C Best hit),AK072079 (DDBJ%2C Best hit);ORF_evidence=A3AJ11 (UniProt);NIAS_FLcDNA=J013038J18,J013116L12;Expression=AK120207;TENOR=Os03t0411000-01;KEGG=Os03t0411000-01
Chr03	irgsp1_rep	five_prime_UTR	16948546	16948753	.	+	.	Parent=Os03t0411000-01
Chr03	irgsp1_rep	CDS	16948754	16948792	.	+	0	Parent=Os03t0411000-01
Chr03	irgsp1_rep	CDS	16949588	16949714	.	+	0	Parent=Os03t0411000-01
Chr03	irgsp1_rep	CDS	16950441	16950567	.	+	2	Parent=Os03t0411000-01
Chr03	irgsp1_rep	CDS	16950982	16951547	.	+	1	Parent=Os03t0411000-01
Chr03	irgsp1_rep	CDS	16952012	16952327	.	+	2	Parent=Os03t0411000-01
Chr03	irgsp1_rep	CDS	16952489	16952729	.	+	1	Parent=Os03t0411000-01
Chr03	irgsp1_rep	CDS	16952850	16952939	.	+	0	Parent=Os03t0411000-01
Chr03	irgsp1_rep	CDS	16953459	16953896	.	+	0	Parent=Os03t0411000-01
Chr03	irgsp1_rep	CDS	16953993	16954364	.	+	0	Parent=Os03t0411000-01
Chr03	irgsp1_rep	three_prime_UTR	16954365	16954701	.	+	.	Parent=Os03t0411000-01
Chr03	irgsp1_rep	mRNA	16965191	16970732	.	+	.	ID=Os03t0411100-01;Name=Os03t0411100-01;Locus_id=Os03g0411100;RAP-DB Gene Symbol Synonym(s)=HAP2E%2C OsHAP2E%2C NF-YA%2C CBF-B;RAP-DB Gene Name Synonym(s)=HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX;CGSNL Gene Symbol=HAP2E;CGSNL Gene Name=HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX;Oryzabase Gene Symbol Synonym(s)=OsHAP2E%2C NF-YA%2C CBF-B%2C NF-YA2%2C OsNF-YA2%2C NFYA2;Oryzabase Gene Name Synonym(s)=NUCLEAR FACTOR-Y subunit A2%2C NUCLEAR FACTOR-Y subunit NF-YA2%2C NF-YA transcription factor 2%2C NF-YA subunit 2%2C NF-YA family 2;Note=Heme activator protein%2C CCAAT-binding transcription factor%2C Biotic and abiotic resistances;Transcript_evidence=AK071595;ORF_evidence=Q852G5;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Cellular Component: CCAAT-binding factor complex (GO:0016602);InterPro=CCAAT-binding transcription factor%2C subunit B (IPR001289),CCAAT-binding factor%2C conserved site (IPR018362);NIAS_FLcDNA=J023106F21;Manual Curation=April 3%2C 2015;Literature_PMID=25168932,18193457;Oryzabase=8477;Expression=AK071595;TENOR=Os03t0411100-01;KEGG=Os03t0411100-01
Chr03	irgsp1_rep	five_prime_UTR	16965191	16965408	.	+	.	Parent=Os03t0411100-01
Chr03	irgsp1_rep	five_prime_UTR	16966889	16966929	.	+	.	Parent=Os03t0411100-01
Chr03	irgsp1_rep	CDS	16966930	16966992	.	+	0	Parent=Os03t0411100-01
Chr03	irgsp1_rep	CDS	16967081	16967234	.	+	0	Parent=Os03t0411100-01
Chr03	irgsp1_rep	CDS	16968868	16968998	.	+	2	Parent=Os03t0411100-01
Chr03	irgsp1_rep	CDS	16969076	16969150	.	+	0	Parent=Os03t0411100-01
Chr03	irgsp1_rep	CDS	16969431	16969598	.	+	0	Parent=Os03t0411100-01
Chr03	irgsp1_rep	CDS	16969953	16970315	.	+	0	Parent=Os03t0411100-01
Chr03	irgsp1_rep	three_prime_UTR	16970316	16970732	.	+	.	Parent=Os03t0411100-01
Chr03	irgsp1_rep	mRNA	16966709	16970694	.	+	.	ID=Os03t0411100-02;Name=Os03t0411100-02;Locus_id=Os03g0411100;CGSNL Gene Symbol=HAP2E;CGSNL Gene Name=HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX;Oryzabase Gene Symbol Synonym(s)=OsHAP2E%2C NF-YA%2C CBF-B%2C NF-YA2%2C OsNF-YA2%2C NFYA2;Oryzabase Gene Name Synonym(s)=NUCLEAR FACTOR-Y subunit A2%2C NUCLEAR FACTOR-Y subunit NF-YA2%2C NF-YA transcription factor 2%2C NF-YA subunit 2%2C NF-YA family 2;Note=Similar to Nuclear Y/CCAAT-box binding factor A subunit NF-YA.;Transcript_evidence=AK062135 (DDBJ%2C Best hit);ORF_evidence=A6BLV2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Cellular Component: CCAAT-binding factor complex (GO:0016602),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=CCAAT-binding transcription factor%2C subunit B (IPR001289),CCAAT-binding factor%2C conserved site (IPR018362);NIAS_FLcDNA=001-045-F05;Oryzabase=8477;Expression=AK062135;TENOR=Os03t0411100-02;KEGG=Os03t0411100-02
Chr03	irgsp1_rep	five_prime_UTR	16966709	16966929	.	+	.	Parent=Os03t0411100-02
Chr03	irgsp1_rep	CDS	16966930	16966992	.	+	0	Parent=Os03t0411100-02
Chr03	irgsp1_rep	CDS	16967081	16967234	.	+	0	Parent=Os03t0411100-02
Chr03	irgsp1_rep	CDS	16968868	16968998	.	+	2	Parent=Os03t0411100-02
Chr03	irgsp1_rep	CDS	16969076	16969150	.	+	0	Parent=Os03t0411100-02
Chr03	irgsp1_rep	CDS	16969431	16969598	.	+	0	Parent=Os03t0411100-02
Chr03	irgsp1_rep	CDS	16969953	16970315	.	+	0	Parent=Os03t0411100-02
Chr03	irgsp1_rep	three_prime_UTR	16970316	16970694	.	+	.	Parent=Os03t0411100-02
Chr03	irgsp1_rep	mRNA	16974863	16975683	.	-	.	ID=Os03t0411300-01;Name=Os03t0411300-01;Locus_id=Os03g0411300;Note=EF-Hand type domain containing protein.;Transcript_evidence=AK241952 (DDBJ%2C Best hit);ORF_evidence=B6TEB1 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J075091K10;Oryzabase=22760;TENOR=Os03t0411300-01;KEGG=Os03t0411300-01
Chr03	irgsp1_rep	five_prime_UTR	16975613	16975683	.	-	.	Parent=Os03t0411300-01
Chr03	irgsp1_rep	CDS	16975136	16975612	.	-	0	Parent=Os03t0411300-01
Chr03	irgsp1_rep	three_prime_UTR	16974863	16975135	.	-	.	Parent=Os03t0411300-01
Chr03	irgsp1_rep	mRNA	16994268	16997702	.	+	.	ID=Os03t0411500-01;Name=Os03t0411500-01;Locus_id=Os03g0411500;RAP-DB Gene Symbol Synonym(s)=VYL%2C OsClpP6%2C ClpP6%2C CLP6;RAP-DB Gene Name Synonym(s)=VIRESCENT-YELLOW LEAF%2C plastidic caseinolytic protease 6%2C chloroplast Clp 6%2C Virescent-Yellow Leaf%2C Clp protease 6;CGSNL Gene Symbol=VYL;CGSNL Gene Name=VIRESCENT-YELLOW LEAF;Oryzabase Gene Symbol Synonym(s)=OsClpP6%2C ClpP6%2C CLP6%2C NAL9%2C NAL9/VYL;Oryzabase Gene Name Synonym(s)=plastidic caseinolytic protease 6%2C chloroplast Clp 6%2C Virescent-Yellow Leaf%2C Clp protease 6%2C narrow leaf 9;Note=Subunit of the chloroplast Clp (plastidic caseinolytic protease)%2C Chloroplast biogenesis and leaf development;Transcript_evidence=AK071057,NM_001056884.1;ORF_evidence=Q852G0;GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Clp protease proteolytic subunit /Translocation-enhancing protein TepA (IPR023562),ATP-dependent Clp protease proteolytic subunit (IPR001907),ClpP/crotonase-like domain (IPR029045),ClpP%2C active site (IPR018215);Manual Curation=March 3%2C 2014;Literature_PMID=23803583;Oryzabase=13359;TENOR=Os03t0411500-01
Chr03	irgsp1_rep	five_prime_UTR	16994268	16994328	.	+	.	Parent=Os03t0411500-01
Chr03	irgsp1_rep	CDS	16994329	16994396	.	+	0	Parent=Os03t0411500-01
Chr03	irgsp1_rep	CDS	16994517	16994551	.	+	1	Parent=Os03t0411500-01
Chr03	irgsp1_rep	CDS	16995239	16995308	.	+	2	Parent=Os03t0411500-01
Chr03	irgsp1_rep	CDS	16995449	16995653	.	+	1	Parent=Os03t0411500-01
Chr03	irgsp1_rep	CDS	16995815	16995880	.	+	0	Parent=Os03t0411500-01
Chr03	irgsp1_rep	CDS	16996490	16996630	.	+	0	Parent=Os03t0411500-01
Chr03	irgsp1_rep	CDS	16996842	16996895	.	+	0	Parent=Os03t0411500-01
Chr03	irgsp1_rep	CDS	16997031	16997123	.	+	0	Parent=Os03t0411500-01
Chr03	irgsp1_rep	CDS	16997222	16997269	.	+	0	Parent=Os03t0411500-01
Chr03	irgsp1_rep	three_prime_UTR	16997270	16997702	.	+	.	Parent=Os03t0411500-01
Chr03	irgsp1_rep	mRNA	16999055	17001060	.	+	.	ID=Os03t0411600-00;Name=Os03t0411600-00;Locus_id=Os03g0411600;Note=Similar to predicted protein.;Transcript_evidence=AK374266 (DDBJ);ORF_evidence=NP_001050350.1 (RefSeq);InterPro=Protein of unknown function DUF1195 (IPR010608);TENOR=Os03t0411600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	16999055	16999204	.	+	.	Parent=Os03t0411600-00
Chr03	irgsp1_rep	CDS	16999205	16999477	.	+	0	Parent=Os03t0411600-00
Chr03	irgsp1_rep	CDS	17000842	17001060	.	+	0	Parent=Os03t0411600-00
Chr03	irgsp1_rep	mRNA	17008027	17011263	.	-	.	ID=Os03t0411800-01;Name=Os03t0411800-01;Locus_id=Os03g0411800;CGSNL Gene Symbol=ZIP2;CGSNL Gene Name=ZINC TRANSPORTER 2;Oryzabase Gene Symbol Synonym(s)=OsZIP2%2C OsZIP11%2C ZIP11;Oryzabase Gene Name Synonym(s)=zinc transporter 2%2C Zrt-Irt-like protein 2%2C Zinc-regulated transporter 2%2C zinc transporter 11%2C Zrt-Irt-like protein 11;Note=Similar to Metal transport protein.;Transcript_evidence=AK121551 (DDBJ%2C Best hit);ORF_evidence=Q852F6 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: metal ion transmembrane transporter activity (GO:0046873);InterPro=Zinc/iron permease (IPR003689);NIAS_FLcDNA=J033033B06;Oryzabase=6312;Expression=AK121551;TENOR=Os03t0411800-01;KEGG=Os03t0411800-01
Chr03	irgsp1_rep	five_prime_UTR	17011219	17011263	.	-	.	Parent=Os03t0411800-01
Chr03	irgsp1_rep	CDS	17010726	17011218	.	-	0	Parent=Os03t0411800-01
Chr03	irgsp1_rep	CDS	17010021	17010079	.	-	2	Parent=Os03t0411800-01
Chr03	irgsp1_rep	CDS	17009775	17009904	.	-	0	Parent=Os03t0411800-01
Chr03	irgsp1_rep	CDS	17008237	17008631	.	-	2	Parent=Os03t0411800-01
Chr03	irgsp1_rep	three_prime_UTR	17008027	17008236	.	-	.	Parent=Os03t0411800-01
Chr03	irgsp1_rep	mRNA	17020991	17022755	.	-	.	ID=Os03t0411900-01;Name=Os03t0411900-01;Locus_id=Os03g0411900;Note=Conserved hypothetical protein.;Transcript_evidence=AK241236 (DDBJ%2C Best hit);ORF_evidence=NP_001050352.2 (RefSeq);NIAS_FLcDNA=J065128E21;TENOR=Os03t0411900-01;KEGG=Os03t0411900-01
Chr03	irgsp1_rep	five_prime_UTR	17022573	17022755	.	-	.	Parent=Os03t0411900-01
Chr03	irgsp1_rep	CDS	17021412	17022572	.	-	0	Parent=Os03t0411900-01
Chr03	irgsp1_rep	three_prime_UTR	17020991	17021411	.	-	.	Parent=Os03t0411900-01
Chr03	irgsp1_rep	mRNA	17039298	17043915	.	+	.	ID=Os03t0412200-01;Name=Os03t0412200-01;Locus_id=Os03g0412200;Note=Conserved hypothetical protein.;Transcript_evidence=AK061834 (DDBJ%2C Best hit);ORF_evidence=B8AJR0 (UniProt);NIAS_FLcDNA=001-040-D05;Expression=AK061834;TENOR=Os03t0412200-01;KEGG=Os03t0412200-01
Chr03	irgsp1_rep	five_prime_UTR	17039298	17039574	.	+	.	Parent=Os03t0412200-01
Chr03	irgsp1_rep	CDS	17039575	17039638	.	+	0	Parent=Os03t0412200-01
Chr03	irgsp1_rep	CDS	17042917	17043014	.	+	2	Parent=Os03t0412200-01
Chr03	irgsp1_rep	CDS	17043323	17043556	.	+	0	Parent=Os03t0412200-01
Chr03	irgsp1_rep	three_prime_UTR	17043557	17043915	.	+	.	Parent=Os03t0412200-01
Chr03	irgsp1_rep	mRNA	17039314	17043805	.	+	.	ID=Os03t0412200-02;Name=Os03t0412200-02;Locus_id=Os03g0412200;Note=Conserved hypothetical protein.;Transcript_evidence=AK068458 (DDBJ%2C Best hit);ORF_evidence=B8AJR0 (UniProt);NIAS_FLcDNA=J013153M22;TENOR=Os03t0412200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	17039314	17042888	.	+	.	Parent=Os03t0412200-02
Chr03	irgsp1_rep	CDS	17042889	17043014	.	+	0	Parent=Os03t0412200-02
Chr03	irgsp1_rep	CDS	17043323	17043556	.	+	0	Parent=Os03t0412200-02
Chr03	irgsp1_rep	three_prime_UTR	17043557	17043805	.	+	.	Parent=Os03t0412200-02
Chr03	irgsp1_rep	mRNA	17046920	17049233	.	+	.	ID=Os03t0412300-01;Name=Os03t0412300-01;Locus_id=Os03g0412300;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK071008 (DDBJ%2C Best hit);ORF_evidence=Q852E9 (UniProt);NIAS_FLcDNA=J023080E10;Expression=AK071008;TENOR=Os03t0412300-01;KEGG=Os03t0412300-01
Chr03	irgsp1_rep	five_prime_UTR	17046920	17047095	.	+	.	Parent=Os03t0412300-01
Chr03	irgsp1_rep	CDS	17047096	17047107	.	+	0	Parent=Os03t0412300-01
Chr03	irgsp1_rep	CDS	17048068	17048149	.	+	0	Parent=Os03t0412300-01
Chr03	irgsp1_rep	CDS	17048224	17048789	.	+	2	Parent=Os03t0412300-01
Chr03	irgsp1_rep	CDS	17048853	17048939	.	+	0	Parent=Os03t0412300-01
Chr03	irgsp1_rep	three_prime_UTR	17048940	17049233	.	+	.	Parent=Os03t0412300-01
Chr03	irgsp1_rep	mRNA	17053185	17054293	.	-	.	ID=Os03t0412400-01;Name=Os03t0412400-01;Locus_id=Os03g0412400;Note=Conserved hypothetical protein.;Transcript_evidence=AK110543 (DDBJ%2C Best hit);ORF_evidence=A2XHX8 (UniProt);NIAS_FLcDNA=002-168-B05;Expression=AK110543;TENOR=Os03t0412400-01;KEGG=Os03t0412400-01
Chr03	irgsp1_rep	five_prime_UTR	17054237	17054293	.	-	.	Parent=Os03t0412400-01
Chr03	irgsp1_rep	CDS	17053376	17054236	.	-	0	Parent=Os03t0412400-01
Chr03	irgsp1_rep	three_prime_UTR	17053185	17053375	.	-	.	Parent=Os03t0412400-01
Chr03	irgsp1_rep	mRNA	17067904	17072245	.	+	.	ID=Os03t0412800-01;Name=Os03t0412800-01;Locus_id=Os03g0412800;Oryzabase Gene Symbol Synonym(s)=OsG6PDH4;Oryzabase Gene Name Synonym(s)=d-glucose 6-phosphate dehydrogenase 4;Note=Similar to Glucose-6-phosphate dehydrogenase precursor.;Transcript_evidence=AK067510 (DDBJ%2C Best hit);ORF_evidence=B8AJR1 (UniProt);GO=Biological Process: glucose metabolic process (GO:0006006),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: glucose-6-phosphate dehydrogenase activity (GO:0004345),Molecular Function: NADP binding (GO:0050661);InterPro=Glucose-6-phosphate dehydrogenase (IPR001282),NAD(P)-binding domain (IPR016040),Glucose-6-phosphate dehydrogenase%2C active site (IPR019796),Glucose-6-phosphate dehydrogenase%2C NAD-binding (IPR022674),Glucose-6-phosphate dehydrogenase%2C C-terminal (IPR022675);NIAS_FLcDNA=J013109K05;Oryzabase=14997;Expression=AK067510;TENOR=Os03t0412800-01;KEGG=Os03t0412800-01 (EC:1.1.1.49)
Chr03	irgsp1_rep	five_prime_UTR	17067904	17067910	.	+	.	Parent=Os03t0412800-01
Chr03	irgsp1_rep	CDS	17067911	17068103	.	+	0	Parent=Os03t0412800-01
Chr03	irgsp1_rep	CDS	17068187	17068338	.	+	2	Parent=Os03t0412800-01
Chr03	irgsp1_rep	CDS	17068462	17068556	.	+	0	Parent=Os03t0412800-01
Chr03	irgsp1_rep	CDS	17068880	17068994	.	+	1	Parent=Os03t0412800-01
Chr03	irgsp1_rep	CDS	17069314	17069519	.	+	0	Parent=Os03t0412800-01
Chr03	irgsp1_rep	CDS	17069612	17069761	.	+	1	Parent=Os03t0412800-01
Chr03	irgsp1_rep	CDS	17070654	17070774	.	+	1	Parent=Os03t0412800-01
Chr03	irgsp1_rep	CDS	17070889	17071118	.	+	0	Parent=Os03t0412800-01
Chr03	irgsp1_rep	CDS	17071642	17072113	.	+	1	Parent=Os03t0412800-01
Chr03	irgsp1_rep	three_prime_UTR	17072114	17072245	.	+	.	Parent=Os03t0412800-01
Chr03	irgsp1_rep	mRNA	17068196	17072133	.	-	.	ID=Os03t0412850-00;Name=Os03t0412850-00;Locus_id=Os03g0412850;Note=Hypothetical protein.;Transcript_evidence=tplb0030j08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0412850-00
Chr03	irgsp1_rep	five_prime_UTR	17072132	17072133	.	-	.	Parent=Os03t0412850-00
Chr03	irgsp1_rep	CDS	17071682	17072131	.	-	0	Parent=Os03t0412850-00
Chr03	irgsp1_rep	CDS	17070887	17071131	.	-	0	Parent=Os03t0412850-00
Chr03	irgsp1_rep	CDS	17070658	17070772	.	-	1	Parent=Os03t0412850-00
Chr03	irgsp1_rep	CDS	17069722	17069763	.	-	0	Parent=Os03t0412850-00
Chr03	irgsp1_rep	three_prime_UTR	17069619	17069721	.	-	.	Parent=Os03t0412850-00
Chr03	irgsp1_rep	three_prime_UTR	17069302	17069530	.	-	.	Parent=Os03t0412850-00
Chr03	irgsp1_rep	three_prime_UTR	17068887	17068979	.	-	.	Parent=Os03t0412850-00
Chr03	irgsp1_rep	three_prime_UTR	17068445	17068561	.	-	.	Parent=Os03t0412850-00
Chr03	irgsp1_rep	three_prime_UTR	17068196	17068325	.	-	.	Parent=Os03t0412850-00
Chr03	irgsp1_rep	mRNA	17077854	17084040	.	+	.	ID=Os03t0412900-00;Name=Os03t0412900-00;Locus_id=Os03g0412900;Note=DEK%2C C-terminal domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q75IZ8 (UniProt);InterPro=DEK%2C C-terminal (IPR014876);TENOR=Os03t0412900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	17077854	17077967	.	+	0	Parent=Os03t0412900-00
Chr03	irgsp1_rep	CDS	17079028	17079135	.	+	0	Parent=Os03t0412900-00
Chr03	irgsp1_rep	CDS	17079204	17079278	.	+	0	Parent=Os03t0412900-00
Chr03	irgsp1_rep	CDS	17079920	17080009	.	+	0	Parent=Os03t0412900-00
Chr03	irgsp1_rep	CDS	17080126	17080233	.	+	0	Parent=Os03t0412900-00
Chr03	irgsp1_rep	CDS	17080313	17080387	.	+	0	Parent=Os03t0412900-00
Chr03	irgsp1_rep	CDS	17080547	17080609	.	+	0	Parent=Os03t0412900-00
Chr03	irgsp1_rep	CDS	17080707	17081100	.	+	0	Parent=Os03t0412900-00
Chr03	irgsp1_rep	CDS	17082715	17082827	.	+	2	Parent=Os03t0412900-00
Chr03	irgsp1_rep	CDS	17082975	17083005	.	+	0	Parent=Os03t0412900-00
Chr03	irgsp1_rep	CDS	17083163	17084040	.	+	2	Parent=Os03t0412900-00
Chr03	irgsp1_rep	mRNA	17085270	17086334	.	+	.	ID=Os03t0413000-01;Name=Os03t0413000-01;Locus_id=Os03g0413000;CGSNL Gene Symbol=HAP3I;CGSNL Gene Name=HAP3I SUBUNIT OF CCAAT-BOX BINDING COMPLEX;Oryzabase Gene Symbol Synonym(s)=OsHAP3I%2C NF-YB%2C CBF-A%2C NF-YB8%2C OsNF-YB8%2C NFYB8;Oryzabase Gene Name Synonym(s)=NUCLEAR FACTOR-Y subunit B8%2C NUCLEAR FACTOR-Y subunit NF-YB8%2C NF-YB subunit 8%2C NF-YB family 8;Note=Similar to Potential histone-like transcription factor.;Transcript_evidence=AK060225 (DDBJ%2C Best hit);ORF_evidence=Q6YNK1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: intracellular (GO:0005622),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Transcription factor%2C NFYB/HAP3%2C conserved site (IPR003956),Transcription factor%2C CBFA/NFYB%2C DNA topoisomerase (IPR003957),Transcription factor CBF/NF-Y/archaeal histone (IPR003958),Histone-fold (IPR009072);NIAS_FLcDNA=001-002-G06;Oryzabase=8488;Expression=AK060225;TENOR=Os03t0413000-01;KEGG=Os03t0413000-01
Chr03	irgsp1_rep	five_prime_UTR	17085270	17085387	.	+	.	Parent=Os03t0413000-01
Chr03	irgsp1_rep	CDS	17085388	17086047	.	+	0	Parent=Os03t0413000-01
Chr03	irgsp1_rep	three_prime_UTR	17086048	17086334	.	+	.	Parent=Os03t0413000-01
Chr03	irgsp1_rep	mRNA	17092073	17095230	.	+	.	ID=Os03t0413100-01;Name=Os03t0413100-01;Locus_id=Os03g0413100;CGSNL Gene Symbol=ACR7;CGSNL Gene Name=ACT DOMAIN REPEAT PROTEIN 7;Oryzabase Gene Symbol Synonym(s)=OsACR7;Oryzabase Gene Name Synonym(s)=ACT-domain repeat protein 7;Note=Similar to ACR4.;Transcript_evidence=AK063316 (DDBJ%2C Best hit);ORF_evidence=B6SL14 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: amino acid binding (GO:0016597);InterPro=Amino acid-binding ACT (IPR002912);NIAS_FLcDNA=001-113-G09;Oryzabase=7257;Expression=AK063316;TENOR=Os03t0413100-01;KEGG=Os03t0413100-01
Chr03	irgsp1_rep	five_prime_UTR	17092073	17092265	.	+	.	Parent=Os03t0413100-01
Chr03	irgsp1_rep	CDS	17092266	17092269	.	+	0	Parent=Os03t0413100-01
Chr03	irgsp1_rep	CDS	17092859	17092934	.	+	2	Parent=Os03t0413100-01
Chr03	irgsp1_rep	CDS	17093047	17093092	.	+	1	Parent=Os03t0413100-01
Chr03	irgsp1_rep	CDS	17093189	17093303	.	+	0	Parent=Os03t0413100-01
Chr03	irgsp1_rep	CDS	17093393	17093472	.	+	2	Parent=Os03t0413100-01
Chr03	irgsp1_rep	CDS	17093549	17094142	.	+	0	Parent=Os03t0413100-01
Chr03	irgsp1_rep	CDS	17094235	17094339	.	+	0	Parent=Os03t0413100-01
Chr03	irgsp1_rep	CDS	17094745	17095083	.	+	0	Parent=Os03t0413100-01
Chr03	irgsp1_rep	three_prime_UTR	17095084	17095230	.	+	.	Parent=Os03t0413100-01
Chr03	irgsp1_rep	mRNA	17092120	17096270	.	+	.	ID=Os03t0413100-02;Name=Os03t0413100-02;Locus_id=Os03g0413100;CGSNL Gene Symbol=ACR7;CGSNL Gene Name=ACT DOMAIN REPEAT PROTEIN 7;Oryzabase Gene Symbol Synonym(s)=OsACR7;Oryzabase Gene Name Synonym(s)=ACT-domain repeat protein 7;Note=Similar to ACR4.;Transcript_evidence=AK100182 (DDBJ%2C Best hit);ORF_evidence=B6SL14 (UniProt);NIAS_FLcDNA=J023030G12;Oryzabase=7257;Expression=AK100182;TENOR=Os03t0413100-02;KEGG=Os03t0413100-02
Chr03	irgsp1_rep	five_prime_UTR	17092120	17092265	.	+	.	Parent=Os03t0413100-02
Chr03	irgsp1_rep	CDS	17092266	17092269	.	+	0	Parent=Os03t0413100-02
Chr03	irgsp1_rep	CDS	17092859	17092934	.	+	2	Parent=Os03t0413100-02
Chr03	irgsp1_rep	CDS	17093047	17093069	.	+	1	Parent=Os03t0413100-02
Chr03	irgsp1_rep	CDS	17093189	17093346	.	+	2	Parent=Os03t0413100-02
Chr03	irgsp1_rep	three_prime_UTR	17093347	17093472	.	+	.	Parent=Os03t0413100-02
Chr03	irgsp1_rep	three_prime_UTR	17093549	17094142	.	+	.	Parent=Os03t0413100-02
Chr03	irgsp1_rep	three_prime_UTR	17094235	17094339	.	+	.	Parent=Os03t0413100-02
Chr03	irgsp1_rep	three_prime_UTR	17094745	17096270	.	+	.	Parent=Os03t0413100-02
Chr03	irgsp1_rep	mRNA	17095041	17096214	.	+	.	ID=Os03t0413100-03;Name=Os03t0413100-03;Locus_id=Os03g0413100;CGSNL Gene Symbol=ACR7;CGSNL Gene Name=ACT DOMAIN REPEAT PROTEIN 7;Oryzabase Gene Symbol Synonym(s)=OsACR7;Oryzabase Gene Name Synonym(s)=ACT-domain repeat protein 7;Note=Hypothetical conserved gene.;Transcript_evidence=AK061832 (DDBJ%2C Best hit);ORF_evidence=B9F901 (UniProt);NIAS_FLcDNA=001-040-D03;Oryzabase=7257;Expression=AK061832;TENOR=Os03t0413100-03;KEGG=Os03t0413100-03
Chr03	irgsp1_rep	five_prime_UTR	17095041	17095546	.	+	.	Parent=Os03t0413100-03
Chr03	irgsp1_rep	CDS	17095547	17096167	.	+	0	Parent=Os03t0413100-03
Chr03	irgsp1_rep	three_prime_UTR	17096168	17096214	.	+	.	Parent=Os03t0413100-03
Chr03	irgsp1_rep	mRNA	17092877	17095074	.	-	.	ID=Os03t0413250-00;Name=Os03t0413250-00;Locus_id=Os03g0413250;Note=Hypothetical protein.;Transcript_evidence=tplb0061b06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0413250-00
Chr03	irgsp1_rep	five_prime_UTR	17094711	17095074	.	-	.	Parent=Os03t0413250-00
Chr03	irgsp1_rep	five_prime_UTR	17094244	17094306	.	-	.	Parent=Os03t0413250-00
Chr03	irgsp1_rep	five_prime_UTR	17094107	17094153	.	-	.	Parent=Os03t0413250-00
Chr03	irgsp1_rep	CDS	17093786	17094106	.	-	0	Parent=Os03t0413250-00
Chr03	irgsp1_rep	three_prime_UTR	17093538	17093785	.	-	.	Parent=Os03t0413250-00
Chr03	irgsp1_rep	three_prime_UTR	17093195	17093366	.	-	.	Parent=Os03t0413250-00
Chr03	irgsp1_rep	three_prime_UTR	17092877	17092981	.	-	.	Parent=Os03t0413250-00
Chr03	irgsp1_rep	mRNA	17109195	17113767	.	-	.	ID=Os03t0413400-01;Name=Os03t0413400-01;Locus_id=Os03g0413400;CGSNL Gene Symbol=GAUT10;CGSNL Gene Name=GALACTURONOSYLTRANSFERASE 10;Oryzabase Gene Symbol Synonym(s)=OsGAUT10;Oryzabase Gene Name Synonym(s)=galacturonosyltransferase 10;Note=Glycosyl transferase%2C family 8 protein.;Transcript_evidence=AK100228 (DDBJ%2C Best hit);ORF_evidence=NP_001147871.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 8 (IPR002495);NIAS_FLcDNA=J023048J06;Oryzabase=23251;Expression=AK100228;TENOR=Os03t0413400-01;KEGG=Os03t0413400-01
Chr03	irgsp1_rep	five_prime_UTR	17113636	17113767	.	-	.	Parent=Os03t0413400-01
Chr03	irgsp1_rep	five_prime_UTR	17113459	17113460	.	-	.	Parent=Os03t0413400-01
Chr03	irgsp1_rep	CDS	17113288	17113458	.	-	0	Parent=Os03t0413400-01
Chr03	irgsp1_rep	CDS	17109712	17111166	.	-	0	Parent=Os03t0413400-01
Chr03	irgsp1_rep	three_prime_UTR	17109195	17109711	.	-	.	Parent=Os03t0413400-01
Chr03	irgsp1_rep	mRNA	17143001	17144403	.	-	.	ID=Os03t0414100-01;Name=Os03t0414100-01;Locus_id=Os03g0414100;Note=Conserved hypothetical protein.;Transcript_evidence=AK100586 (DDBJ%2C Best hit);ORF_evidence=B8AJR7 (UniProt);NIAS_FLcDNA=J023106B10;Expression=AK100586;TENOR=Os03t0414100-01;KEGG=Os03t0414100-01
Chr03	irgsp1_rep	five_prime_UTR	17144300	17144403	.	-	.	Parent=Os03t0414100-01
Chr03	irgsp1_rep	CDS	17143214	17144299	.	-	0	Parent=Os03t0414100-01
Chr03	irgsp1_rep	three_prime_UTR	17143001	17143213	.	-	.	Parent=Os03t0414100-01
Chr03	irgsp1_rep	mRNA	17143211	17144317	.	+	.	ID=Os03t0414200-00;Name=Os03t0414200-00;Locus_id=Os03g0414200;Note=Hypothetical gene.;Transcript_evidence=EU965633 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0414200-00
Chr03	irgsp1_rep	CDS	17143211	17143504	.	+	0	Parent=Os03t0414200-00
Chr03	irgsp1_rep	CDS	17143667	17143894	.	+	0	Parent=Os03t0414200-00
Chr03	irgsp1_rep	CDS	17144162	17144185	.	+	0	Parent=Os03t0414200-00
Chr03	irgsp1_rep	three_prime_UTR	17144186	17144317	.	+	.	Parent=Os03t0414200-00
Chr03	irgsp1_rep	mRNA	17172478	17174177	.	-	.	ID=Os03t0414400-01;Name=Os03t0414400-01;Locus_id=Os03g0414400;RAP-DB Gene Symbol Synonym(s)=OsHCF222;RAP-DB Gene Name Synonym(s)=HIGH CHLOROPHYLL FLUORESCENCE 222;Note=Ortholog of Arabidopsis HCF222%2C Thylakoid membrane development%2C Regulation of cellular reactive oxygen species (ROS) homeostasis for thylakoid membrane stability;Transcript_evidence=AK059068,AK100793;ORF_evidence=Q75IY5;NIAS_FLcDNA=001-021-H01,J023121E03;Manual Curation=July 15%2C 2020;Literature_PMID=32661060;TENOR=Os03t0414400-01;Subcellular location=chloroplast (GO:0009507), endoplasmic reticulum (GO:0005783)
Chr03	irgsp1_rep	five_prime_UTR	17174117	17174177	.	-	.	Parent=Os03t0414400-01
Chr03	irgsp1_rep	five_prime_UTR	17174003	17174029	.	-	.	Parent=Os03t0414400-01
Chr03	irgsp1_rep	CDS	17173890	17174002	.	-	0	Parent=Os03t0414400-01
Chr03	irgsp1_rep	CDS	17172656	17172878	.	-	1	Parent=Os03t0414400-01
Chr03	irgsp1_rep	three_prime_UTR	17172478	17172655	.	-	.	Parent=Os03t0414400-01
Chr03	irgsp1_rep	mRNA	17197456	17198247	.	+	.	ID=Os03t0414900-00;Name=Os03t0414900-00;Locus_id=Os03g0414900;Oryzabase Gene Symbol Synonym(s)=OsaBGL1%2C OsBGL1%2C BGL1;Oryzabase Gene Name Synonym(s)=BIG GRAIN LIKE 1;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001050363.1 (RefSeq);Oryzabase=22099;TENOR=Os03t0414900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	17197456	17197836	.	+	0	Parent=Os03t0414900-00
Chr03	irgsp1_rep	CDS	17197981	17198247	.	+	0	Parent=Os03t0414900-00
Chr03	irgsp1_rep	mRNA	17204629	17204696	.	+	.	ID=Os03t0415050-00;Name=Os03t0415050-00;Locus_id=Os03g0415050;Note=Non-protein coding transcript.;Transcript_evidence=X06284 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0415050-00
Chr03	irgsp1_rep	exon	17204629	17204696	.	+	.	Parent=Os03t0415050-00
Chr03	irgsp1_rep	mRNA	17207294	17210591	.	-	.	ID=Os03t0415200-01;Name=Os03t0415200-01;Locus_id=Os03g0415200;Note=Similar to MAP3K protein kinase-like protein.;Transcript_evidence=AK064733 (DDBJ%2C Best hit);ORF_evidence=NP_172824.3 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: intracellular signal transduction (GO:0035556),Molecular Function: phospholipase C activity (GO:0004629),Molecular Function: phosphoric diester hydrolase activity (GO:0008081);InterPro=Phospholipase C%2C phosphatidylinositol-specific %2C X domain (IPR000909),PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain (IPR017946);NIAS_FLcDNA=002-120-C04;Expression=AK064733;TENOR=Os03t0415200-01;KEGG=Os03t0415200-01
Chr03	irgsp1_rep	five_prime_UTR	17210517	17210591	.	-	.	Parent=Os03t0415200-01
Chr03	irgsp1_rep	five_prime_UTR	17210385	17210420	.	-	.	Parent=Os03t0415200-01
Chr03	irgsp1_rep	CDS	17210307	17210384	.	-	0	Parent=Os03t0415200-01
Chr03	irgsp1_rep	CDS	17210071	17210193	.	-	0	Parent=Os03t0415200-01
Chr03	irgsp1_rep	CDS	17209217	17209354	.	-	0	Parent=Os03t0415200-01
Chr03	irgsp1_rep	CDS	17209014	17209112	.	-	0	Parent=Os03t0415200-01
Chr03	irgsp1_rep	CDS	17208623	17208926	.	-	0	Parent=Os03t0415200-01
Chr03	irgsp1_rep	CDS	17208306	17208529	.	-	2	Parent=Os03t0415200-01
Chr03	irgsp1_rep	CDS	17208092	17208178	.	-	0	Parent=Os03t0415200-01
Chr03	irgsp1_rep	CDS	17207933	17207962	.	-	0	Parent=Os03t0415200-01
Chr03	irgsp1_rep	three_prime_UTR	17207883	17207932	.	-	.	Parent=Os03t0415200-01
Chr03	irgsp1_rep	three_prime_UTR	17207685	17207794	.	-	.	Parent=Os03t0415200-01
Chr03	irgsp1_rep	three_prime_UTR	17207294	17207578	.	-	.	Parent=Os03t0415200-01
Chr03	irgsp1_rep	mRNA	17214956	17215684	.	-	.	ID=Os03t0415351-00;Name=Os03t0415351-00;Locus_id=Os03g0415351;Note=Conserved hypothetical protein.;Transcript_evidence=AK356814 (DDBJ);ORF_evidence=Q75IX2 (UniProt);TENOR=Os03t0415351-00
Chr03	irgsp1_rep	five_prime_UTR	17215682	17215684	.	-	.	Parent=Os03t0415351-00
Chr03	irgsp1_rep	CDS	17214956	17215681	.	-	0	Parent=Os03t0415351-00
Chr03	irgsp1_rep	mRNA	17236581	17240956	.	+	.	ID=Os03t0415500-01;Name=Os03t0415500-01;Locus_id=Os03g0415500;Note=Mitochondrial import inner membrane translocase%2C subunit Tim17/22 family protein.;Transcript_evidence=AK108435 (DDBJ%2C Best hit);ORF_evidence=B6SUP6 (UniProt);InterPro=Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 (IPR003397);NIAS_FLcDNA=002-143-B04;Expression=AK108435;TENOR=Os03t0415500-01;KEGG=Os03t0415500-01
Chr03	irgsp1_rep	five_prime_UTR	17236581	17236688	.	+	.	Parent=Os03t0415500-01
Chr03	irgsp1_rep	CDS	17236689	17237305	.	+	0	Parent=Os03t0415500-01
Chr03	irgsp1_rep	CDS	17240640	17240649	.	+	1	Parent=Os03t0415500-01
Chr03	irgsp1_rep	three_prime_UTR	17240650	17240956	.	+	.	Parent=Os03t0415500-01
Chr03	irgsp1_rep	mRNA	17247969	17248679	.	+	.	ID=Os03t0415600-00;Name=Os03t0415600-00;Locus_id=Os03g0415600;Note=Similar to mitochondrial import inner membrane translocase subunit Tim17.;Transcript_evidence=EU966812 (DDBJ);ORF_evidence=NP_001150396.1 (RefSeq);InterPro=Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 (IPR003397);TENOR=Os03t0415600-00
Chr03	irgsp1_rep	CDS	17247969	17248679	.	+	0	Parent=Os03t0415600-00
Chr03	irgsp1_rep	mRNA	17248806	17249567	.	+	.	ID=Os03t0415700-00;Name=Os03t0415700-00;Locus_id=Os03g0415700;Note=Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 domain containing protein.;Transcript_evidence=FP098964 (DDBJ);ORF_evidence=Q75IW5 (UniProt);InterPro=Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 (IPR003397);TENOR=Os03t0415700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	17248806	17249567	.	+	0	Parent=Os03t0415700-00
Chr03	irgsp1_rep	mRNA	17252230	17253187	.	-	.	ID=Os03t0415750-01;Name=Os03t0415750-01;Locus_id=Os03g0415750;Note=Hypothetical gene.;Transcript_evidence=AK288020 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J075125N08;TENOR=Os03t0415750-01;KEGG=Os03t0415750-01
Chr03	irgsp1_rep	five_prime_UTR	17253073	17253187	.	-	.	Parent=Os03t0415750-01
Chr03	irgsp1_rep	CDS	17252854	17253072	.	-	0	Parent=Os03t0415750-01
Chr03	irgsp1_rep	three_prime_UTR	17252230	17252853	.	-	.	Parent=Os03t0415750-01
Chr03	irgsp1_rep	mRNA	17260407	17262436	.	+	.	ID=Os03t0416200-01;Name=Os03t0416200-01;Locus_id=Os03g0416200;CGSNL Gene Symbol=BC1;CGSNL Gene Name=BRITTLE CULM 1;Oryzabase Gene Symbol Synonym(s)=bc1%2C bc-1%2C OsBC1%2C CWA1%2C FP1%2C OsPCS3%2C PCS3;Oryzabase Gene Name Synonym(s)=brittle culm1%2C BRITTLE CULM1%2C brittle culm-1%2C COBRA-like protein 5%2C Protein BRITTLE CULM1%2C Cell Wall Architecture 1%2C fragile plant 1%2C Phytochelatin synthase 3;Note=BRITTLE CULM1.;Transcript_evidence=AK069631 (DDBJ%2C Best hit);ORF_evidence=Q10JL1 (UniProt);InterPro=Glycosyl-phosphatidyl inositol-anchored%2C plant (IPR006918),COBRA-like (IPR017391);NIAS_FLcDNA=J023025J18;Oryzabase=562;Expression=AK069631;TENOR=Os03t0416200-01;KEGG=Os03t0416200-01
Chr03	irgsp1_rep	five_prime_UTR	17260407	17260500	.	+	.	Parent=Os03t0416200-01
Chr03	irgsp1_rep	CDS	17260501	17260561	.	+	0	Parent=Os03t0416200-01
Chr03	irgsp1_rep	CDS	17260656	17261714	.	+	2	Parent=Os03t0416200-01
Chr03	irgsp1_rep	CDS	17261821	17262107	.	+	2	Parent=Os03t0416200-01
Chr03	irgsp1_rep	three_prime_UTR	17262108	17262436	.	+	.	Parent=Os03t0416200-01
Chr03	irgsp1_rep	mRNA	17260437	17262351	.	+	.	ID=Os03t0416200-02;Name=Os03t0416200-02;Locus_id=Os03g0416200;CGSNL Gene Symbol=BC1;CGSNL Gene Name=BRITTLE CULM 1;Oryzabase Gene Symbol Synonym(s)=bc1%2C bc-1%2C OsBC1%2C CWA1%2C FP1%2C OsPCS3%2C PCS3;Oryzabase Gene Name Synonym(s)=brittle culm1%2C BRITTLE CULM1%2C brittle culm-1%2C COBRA-like protein 5%2C Protein BRITTLE CULM1%2C Cell Wall Architecture 1%2C fragile plant 1%2C Phytochelatin synthase 3;Note=BRITTLE CULM1.;Transcript_evidence=AK105862 (DDBJ%2C Best hit);ORF_evidence=B7EGM8 (UniProt);InterPro=Glycosyl-phosphatidyl inositol-anchored%2C plant (IPR006918),COBRA-like (IPR017391);NIAS_FLcDNA=001-204-A03;Oryzabase=562;Expression=AK105862;TENOR=Os03t0416200-02;KEGG=Os03t0416200-02
Chr03	irgsp1_rep	five_prime_UTR	17260437	17260500	.	+	.	Parent=Os03t0416200-02
Chr03	irgsp1_rep	CDS	17260501	17260561	.	+	0	Parent=Os03t0416200-02
Chr03	irgsp1_rep	CDS	17260656	17261714	.	+	2	Parent=Os03t0416200-02
Chr03	irgsp1_rep	CDS	17261821	17262107	.	+	2	Parent=Os03t0416200-02
Chr03	irgsp1_rep	three_prime_UTR	17262108	17262351	.	+	.	Parent=Os03t0416200-02
Chr03	irgsp1_rep	mRNA	17260653	17262036	.	-	.	ID=Os03t0416250-00;Name=Os03t0416250-00;Locus_id=Os03g0416250;Oryzabase Gene Symbol Synonym(s)=OsBC1L2%2C BC1L2;Oryzabase Gene Name Synonym(s)=BRITTLE CULM1-like 2;Note=Hypothetical protein.;Transcript_evidence=tplb0046p06 (Wheat FLcDNA);ORF_evidence=longestORF;Oryzabase=22990;TENOR=Os03t0416250-00
Chr03	irgsp1_rep	five_prime_UTR	17261809	17262036	.	-	.	Parent=Os03t0416250-00
Chr03	irgsp1_rep	CDS	17261800	17261808	.	-	0	Parent=Os03t0416250-00
Chr03	irgsp1_rep	CDS	17261414	17261695	.	-	0	Parent=Os03t0416250-00
Chr03	irgsp1_rep	CDS	17261272	17261328	.	-	0	Parent=Os03t0416250-00
Chr03	irgsp1_rep	three_prime_UTR	17260653	17261271	.	-	.	Parent=Os03t0416250-00
Chr03	irgsp1_rep	mRNA	17262473	17266217	.	-	.	ID=Os03t0416300-01;Name=Os03t0416300-01;Locus_id=Os03g0416300;CGSNL Gene Symbol=BC1L2;CGSNL Gene Name=BRITTLE CULM-LIKE 2;Oryzabase Gene Symbol Synonym(s)=OsBC1L2%2C OsPCS4%2C PCS4;Oryzabase Gene Name Synonym(s)=BRITTLE CULM1-like 2%2C Phytochelatin synthase 4;Note=Similar to Phytochelatin synthetase (Fragment).;Transcript_evidence=AK103650 (DDBJ%2C Best hit);ORF_evidence=Q75IW1 (UniProt);InterPro=Glycosyl-phosphatidyl inositol-anchored%2C plant (IPR006918),COBRA-like (IPR017391);NIAS_FLcDNA=J033135D19;Oryzabase=22983;Expression=AK103650;TENOR=Os03t0416300-01;KEGG=Os03t0416300-01
Chr03	irgsp1_rep	five_prime_UTR	17266019	17266217	.	-	.	Parent=Os03t0416300-01
Chr03	irgsp1_rep	CDS	17265937	17266018	.	-	0	Parent=Os03t0416300-01
Chr03	irgsp1_rep	CDS	17264593	17264672	.	-	2	Parent=Os03t0416300-01
Chr03	irgsp1_rep	CDS	17263686	17264145	.	-	0	Parent=Os03t0416300-01
Chr03	irgsp1_rep	CDS	17263462	17263615	.	-	2	Parent=Os03t0416300-01
Chr03	irgsp1_rep	CDS	17263101	17263378	.	-	1	Parent=Os03t0416300-01
Chr03	irgsp1_rep	CDS	17262696	17263018	.	-	2	Parent=Os03t0416300-01
Chr03	irgsp1_rep	three_prime_UTR	17262473	17262695	.	-	.	Parent=Os03t0416300-01
Chr03	irgsp1_rep	mRNA	17262378	17263018	.	-	.	ID=Os03t0416300-02;Name=Os03t0416300-02;Locus_id=Os03g0416300;CGSNL Gene Symbol=BC1L2;CGSNL Gene Name=BRITTLE CULM-LIKE 2;Oryzabase Gene Symbol Synonym(s)=OsBC1L2%2C OsPCS4%2C PCS4;Oryzabase Gene Name Synonym(s)=BRITTLE CULM1-like 2%2C Phytochelatin synthase 4;Note=Similar to COBRA-like protein 2.;Transcript_evidence=AK058400 (DDBJ%2C Best hit);ORF_evidence=Q75IW1 (UniProt);NIAS_FLcDNA=001-015-B05;Oryzabase=22983;Expression=AK058400;TENOR=Os03t0416300-02;KEGG=Os03t0416300-02
Chr03	irgsp1_rep	five_prime_UTR	17263017	17263018	.	-	.	Parent=Os03t0416300-02
Chr03	irgsp1_rep	CDS	17262696	17263016	.	-	0	Parent=Os03t0416300-02
Chr03	irgsp1_rep	three_prime_UTR	17262378	17262695	.	-	.	Parent=Os03t0416300-02
Chr03	irgsp1_rep	mRNA	17262737	17264675	.	+	.	ID=Os03t0416350-00;Name=Os03t0416350-00;Locus_id=Os03g0416350;Note=Hypothetical protein.;Transcript_evidence=tplb0046p06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0416350-00
Chr03	irgsp1_rep	five_prime_UTR	17262737	17262771	.	+	.	Parent=Os03t0416350-00
Chr03	irgsp1_rep	CDS	17262772	17262987	.	+	0	Parent=Os03t0416350-00
Chr03	irgsp1_rep	three_prime_UTR	17262988	17263011	.	+	.	Parent=Os03t0416350-00
Chr03	irgsp1_rep	three_prime_UTR	17263090	17263374	.	+	.	Parent=Os03t0416350-00
Chr03	irgsp1_rep	three_prime_UTR	17263454	17263611	.	+	.	Parent=Os03t0416350-00
Chr03	irgsp1_rep	three_prime_UTR	17263692	17264134	.	+	.	Parent=Os03t0416350-00
Chr03	irgsp1_rep	three_prime_UTR	17264584	17264675	.	+	.	Parent=Os03t0416350-00
Chr03	irgsp1_rep	mRNA	17285861	17287294	.	+	.	ID=Os03t0416400-00;Name=Os03t0416400-00;Locus_id=Os03g0416400;Note=Similar to Patatin-like phospholipase family protein%2C expressed.;Transcript_evidence=CT837576 (DDBJ%2C Best hit);ORF_evidence=Q2QMB1 (UniProt);TENOR=Os03t0416400-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	17285861	17285923	.	+	.	Parent=Os03t0416400-00
Chr03	irgsp1_rep	five_prime_UTR	17285930	17286042	.	+	.	Parent=Os03t0416400-00
Chr03	irgsp1_rep	CDS	17286043	17286336	.	+	0	Parent=Os03t0416400-00
Chr03	irgsp1_rep	CDS	17286343	17287287	.	+	0	Parent=Os03t0416400-00
Chr03	irgsp1_rep	three_prime_UTR	17287288	17287294	.	+	.	Parent=Os03t0416400-00
Chr03	irgsp1_rep	mRNA	17288084	17292842	.	-	.	ID=Os03t0416500-01;Name=Os03t0416500-01;Locus_id=Os03g0416500;Note=6-phosphogluconolactonase domain containing protein.;Transcript_evidence=AK103024 (DDBJ%2C Best hit);ORF_evidence=B7EHT5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: pentose-phosphate shunt (GO:0006098),Molecular Function: 6-phosphogluconolactonase activity (GO:0017057);InterPro=6-phosphogluconolactonase%2C DevB-type (IPR005900),Glucosamine/galactosamine-6-phosphate isomerase (IPR006148);NIAS_FLcDNA=J033117B06;Expression=AK103024;TENOR=Os03t0416500-01;KEGG=Os03t0416500-01 (EC:3.1.1.31)
Chr03	irgsp1_rep	five_prime_UTR	17292665	17292842	.	-	.	Parent=Os03t0416500-01
Chr03	irgsp1_rep	five_prime_UTR	17290497	17290498	.	-	.	Parent=Os03t0416500-01
Chr03	irgsp1_rep	CDS	17290261	17290496	.	-	0	Parent=Os03t0416500-01
Chr03	irgsp1_rep	CDS	17290017	17290152	.	-	1	Parent=Os03t0416500-01
Chr03	irgsp1_rep	CDS	17288361	17288879	.	-	0	Parent=Os03t0416500-01
Chr03	irgsp1_rep	three_prime_UTR	17288084	17288360	.	-	.	Parent=Os03t0416500-01
Chr03	irgsp1_rep	mRNA	17288187	17292356	.	-	.	ID=Os03t0416500-02;Name=Os03t0416500-02;Locus_id=Os03g0416500;Note=6-phosphogluconolactonase domain containing protein.;Transcript_evidence=AK073878 (DDBJ%2C Best hit);ORF_evidence=B7ETZ6 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: pentose-phosphate shunt (GO:0006098),Molecular Function: 6-phosphogluconolactonase activity (GO:0017057);InterPro=6-phosphogluconolactonase%2C DevB-type (IPR005900),Glucosamine/galactosamine-6-phosphate isomerase (IPR006148);NIAS_FLcDNA=J033072G18;Expression=AK073878;TENOR=Os03t0416500-02;KEGG=Os03t0416500-02 (EC:3.1.1.31)
Chr03	irgsp1_rep	five_prime_UTR	17290497	17292356	.	-	.	Parent=Os03t0416500-02
Chr03	irgsp1_rep	CDS	17290261	17290496	.	-	0	Parent=Os03t0416500-02
Chr03	irgsp1_rep	CDS	17290017	17290152	.	-	1	Parent=Os03t0416500-02
Chr03	irgsp1_rep	CDS	17288361	17288879	.	-	0	Parent=Os03t0416500-02
Chr03	irgsp1_rep	three_prime_UTR	17288187	17288360	.	-	.	Parent=Os03t0416500-02
Chr03	irgsp1_rep	mRNA	17340417	17342284	.	-	.	ID=Os03t0417700-01;Name=Os03t0417700-01;Locus_id=Os03g0417700;CGSNL Gene Symbol=GL3.2;CGSNL Gene Name=GRAIN LENGTH 3.2;Oryzabase Gene Symbol Synonym(s)=GL3.2;Oryzabase Gene Name Synonym(s)=Grain Length 3.2;Note=Similar to PhytoChrome P450.;Transcript_evidence=AK289252 (DDBJ%2C Best hit);ORF_evidence=A7UGF2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: protein binding (GO:0005515),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),Immunoglobulin-like (IPR007110),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J100081F23;Oryzabase=18585;TENOR=Os03t0417700-01;KEGG=Os03t0417700-01
Chr03	irgsp1_rep	five_prime_UTR	17342249	17342284	.	-	.	Parent=Os03t0417700-01
Chr03	irgsp1_rep	CDS	17341301	17342248	.	-	0	Parent=Os03t0417700-01
Chr03	irgsp1_rep	CDS	17340602	17341201	.	-	0	Parent=Os03t0417700-01
Chr03	irgsp1_rep	three_prime_UTR	17340417	17340601	.	-	.	Parent=Os03t0417700-01
Chr03	irgsp1_rep	mRNA	17340602	17342248	.	-	.	ID=Os03t0417700-02;Name=Os03t0417700-02;Locus_id=Os03g0417700;RAP-DB Gene Symbol Synonym(s)=GL3.2;RAP-DB Gene Name Synonym(s)=Grain Length 3.2;CGSNL Gene Symbol=GL3.2;CGSNL Gene Name=GRAIN LENGTH 3.2;Oryzabase Gene Symbol Synonym(s)=GL3.2;Oryzabase Gene Name Synonym(s)=Grain Length 3.2;Note=CytoChrome P450 paralogue%2C Promotion of grain growth;Transcript_evidence=Inferred from literature;ORF_evidence=Q10JJ6;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 superfamily (IPR036396),CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),Immunoglobulin-like domain (IPR007110),CytoChrome P450%2C conserved site (IPR017972);Manual Curation=September 29%2C 2017;Literature_PMID=25255828;Oryzabase=18585;Subcellular location=endoplasmic reticulum (GO:0005783)
Chr03	irgsp1_rep	CDS	17340602	17342248	.	-	0	Parent=Os03t0417700-02
Chr03	irgsp1_rep	mRNA	17340684	17341207	.	+	.	ID=Os03t0417750-00;Name=Os03t0417750-00;Locus_id=Os03g0417750;Note=Hypothetical protein.;Transcript_evidence=EU942896 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0417750-00
Chr03	irgsp1_rep	five_prime_UTR	17340684	17340685	.	+	.	Parent=Os03t0417750-00
Chr03	irgsp1_rep	CDS	17340686	17341207	.	+	0	Parent=Os03t0417750-00
Chr03	irgsp1_rep	mRNA	17347326	17350501	.	-	.	ID=Os03t0417800-01;Name=Os03t0417800-01;Locus_id=Os03g0417800;Note=Similar to Nap16kDa protein.;Transcript_evidence=AK121654 (DDBJ%2C Best hit);ORF_evidence=A2XI12 (UniProt);NIAS_FLcDNA=J033061K11;TENOR=Os03t0417800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	17350428	17350501	.	-	.	Parent=Os03t0417800-01
Chr03	irgsp1_rep	five_prime_UTR	17348614	17348635	.	-	.	Parent=Os03t0417800-01
Chr03	irgsp1_rep	CDS	17348338	17348613	.	-	0	Parent=Os03t0417800-01
Chr03	irgsp1_rep	CDS	17347608	17347682	.	-	0	Parent=Os03t0417800-01
Chr03	irgsp1_rep	three_prime_UTR	17347326	17347607	.	-	.	Parent=Os03t0417800-01
Chr03	irgsp1_rep	mRNA	17347353	17348423	.	-	.	ID=Os03t0417800-02;Name=Os03t0417800-02;Locus_id=Os03g0417800;Note=Nitrilase associated protein-like.;Transcript_evidence=AK058813 (DDBJ%2C Best hit);ORF_evidence=A2XI12 (UniProt);NIAS_FLcDNA=001-003-E09;Expression=AK058813;TENOR=Os03t0417800-02;KEGG=Os03t0417800-02
Chr03	irgsp1_rep	five_prime_UTR	17348422	17348423	.	-	.	Parent=Os03t0417800-02
Chr03	irgsp1_rep	CDS	17348338	17348421	.	-	0	Parent=Os03t0417800-02
Chr03	irgsp1_rep	CDS	17347608	17347682	.	-	0	Parent=Os03t0417800-02
Chr03	irgsp1_rep	three_prime_UTR	17347353	17347607	.	-	.	Parent=Os03t0417800-02
Chr03	irgsp1_rep	mRNA	17347412	17348640	.	+	.	ID=Os03t0417833-00;Name=Os03t0417833-00;Locus_id=Os03g0417833;Note=Hypothetical gene.;Transcript_evidence=EU943612 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0417833-00;KEGG=Os03t0417833-00
Chr03	irgsp1_rep	five_prime_UTR	17347412	17347513	.	+	.	Parent=Os03t0417833-00
Chr03	irgsp1_rep	CDS	17347514	17347668	.	+	0	Parent=Os03t0417833-00
Chr03	irgsp1_rep	CDS	17348325	17348448	.	+	1	Parent=Os03t0417833-00
Chr03	irgsp1_rep	three_prime_UTR	17348449	17348640	.	+	.	Parent=Os03t0417833-00
Chr03	irgsp1_rep	mRNA	17376488	17386837	.	-	.	ID=Os03t0417900-01;Name=Os03t0417900-01;Locus_id=Os03g0417900;Note=Similar to ARE1-like protein.;Transcript_evidence=AK103622 (DDBJ%2C Best hit);ORF_evidence=NP_565015.1 (RefSeq);InterPro=Vps52/Sac2 (IPR007258);NIAS_FLcDNA=J033133M18;Expression=AK103622;TENOR=Os03t0417900-01;KEGG=Os03t0417900-01
Chr03	irgsp1_rep	five_prime_UTR	17386702	17386837	.	-	.	Parent=Os03t0417900-01
Chr03	irgsp1_rep	CDS	17386598	17386701	.	-	0	Parent=Os03t0417900-01
Chr03	irgsp1_rep	CDS	17386419	17386479	.	-	1	Parent=Os03t0417900-01
Chr03	irgsp1_rep	CDS	17386102	17386197	.	-	0	Parent=Os03t0417900-01
Chr03	irgsp1_rep	CDS	17385645	17385746	.	-	0	Parent=Os03t0417900-01
Chr03	irgsp1_rep	CDS	17384995	17385078	.	-	0	Parent=Os03t0417900-01
Chr03	irgsp1_rep	CDS	17384236	17384316	.	-	0	Parent=Os03t0417900-01
Chr03	irgsp1_rep	CDS	17383333	17383476	.	-	0	Parent=Os03t0417900-01
Chr03	irgsp1_rep	CDS	17382401	17382492	.	-	0	Parent=Os03t0417900-01
Chr03	irgsp1_rep	CDS	17381620	17381701	.	-	1	Parent=Os03t0417900-01
Chr03	irgsp1_rep	CDS	17380848	17381033	.	-	0	Parent=Os03t0417900-01
Chr03	irgsp1_rep	CDS	17379881	17379996	.	-	0	Parent=Os03t0417900-01
Chr03	irgsp1_rep	CDS	17379742	17379800	.	-	1	Parent=Os03t0417900-01
Chr03	irgsp1_rep	CDS	17378717	17378817	.	-	2	Parent=Os03t0417900-01
Chr03	irgsp1_rep	CDS	17378495	17378545	.	-	0	Parent=Os03t0417900-01
Chr03	irgsp1_rep	CDS	17378166	17378345	.	-	0	Parent=Os03t0417900-01
Chr03	irgsp1_rep	CDS	17377910	17378044	.	-	0	Parent=Os03t0417900-01
Chr03	irgsp1_rep	CDS	17377744	17377818	.	-	0	Parent=Os03t0417900-01
Chr03	irgsp1_rep	CDS	17377224	17377281	.	-	0	Parent=Os03t0417900-01
Chr03	irgsp1_rep	CDS	17376842	17377143	.	-	2	Parent=Os03t0417900-01
Chr03	irgsp1_rep	three_prime_UTR	17376488	17376841	.	-	.	Parent=Os03t0417900-01
Chr03	irgsp1_rep	mRNA	17390820	17391862	.	+	.	ID=Os03t0418000-00;Name=Os03t0418000-00;Locus_id=Os03g0418000;CGSNL Gene Symbol=RCH10;CGSNL Gene Name=BASIC CHITINASE 10;Oryzabase Gene Symbol Synonym(s)=RCH10*%2C Cht13%2C Cht12%2C Rcht2;Oryzabase Gene Name Synonym(s)=Rice basic chitinase 10%2C Chitinase-13%2C Chitinase12%2C Basic endochitinase 2 precursor%2C Basic endochitinase 2%2C Chitinase 12%2C Pathogenesis related (PR)-3 chitinase 12%2C Chitinase-12%2C Class II chitinase homologues;Note=Similar to Basic endochitinase 2 precursor (EC 3.2.1.14).;Transcript_evidence=EU045451 (DDBJ%2C Best hit);ORF_evidence=P25765 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: chitin catabolic process (GO:0006032),Biological Process: cell wall macromolecule catabolic process (GO:0016998),Molecular Function: chitinase activity (GO:0004568),Molecular Function: chitin binding (GO:0008061);InterPro=Glycoside hydrolase%2C family 19%2C catalytic (IPR000726),Chitin-binding%2C type 1 (IPR001002),Glycoside hydrolase%2C family 19 (IPR016283),Chitin-binding%2C type 1%2C conserved site (IPR018371),Lysozyme-like domain (IPR023346);Oryzabase=534;TENOR=Os03t0418000-00;KEGG=Os03t0418000-00 (EC:3.2.1.14)
Chr03	irgsp1_rep	five_prime_UTR	17390820	17390855	.	+	.	Parent=Os03t0418000-00
Chr03	irgsp1_rep	CDS	17390856	17391836	.	+	0	Parent=Os03t0418000-00
Chr03	irgsp1_rep	three_prime_UTR	17391837	17391862	.	+	.	Parent=Os03t0418000-00
Chr03	irgsp1_rep	mRNA	17410000	17412951	.	-	.	ID=Os03t0418600-01;Name=Os03t0418600-01;Locus_id=Os03g0418600;RAP-DB Gene Symbol Synonym(s)=Awn3-1;CGSNL Gene Symbol=AN3-1;CGSNL Gene Name=AWN3-1;Oryzabase Gene Symbol Synonym(s)=An3-1;Oryzabase Gene Name Synonym(s)=Awn3-1%2C Awn 3-1;Note=Control of awn development;Transcript_evidence=AK122114;ORF_evidence=Q10JI8;NIAS_FLcDNA=J033128A11;Manual Curation=January 10%2C 2018;Literature_PMID=27494628;Oryzabase=22388;Expression=AK122114;TENOR=Os03t0418600-01;KEGG=Os03t0418600-01
Chr03	irgsp1_rep	five_prime_UTR	17412929	17412951	.	-	.	Parent=Os03t0418600-01
Chr03	irgsp1_rep	CDS	17412478	17412928	.	-	0	Parent=Os03t0418600-01
Chr03	irgsp1_rep	CDS	17412227	17412252	.	-	2	Parent=Os03t0418600-01
Chr03	irgsp1_rep	three_prime_UTR	17410000	17412226	.	-	.	Parent=Os03t0418600-01
Chr03	irgsp1_rep	mRNA	17422111	17426786	.	+	.	ID=Os03t0418700-01;Name=Os03t0418700-01;Locus_id=Os03g0418700;RAP-DB Gene Symbol Synonym(s)=SLG7-L1;RAP-DB Gene Name Synonym(s)=SLG7-like1%2C Slender grain on Chromosome 7-like 1;Oryzabase Gene Name Synonym(s)=SLG7-like1;Note=SLG7-like protein%2C Regulation of grain shape;Transcript_evidence=AK101797;ORF_evidence=Q75GD8;InterPro=Domain of unknown function DUF4378 (IPR025486);NIAS_FLcDNA=J033066F10;Manual Curation=October 8%2C 2020;Literature_PMID=26434724;Oryzabase=20434;Expression=AK101797;TENOR=Os03t0418700-01;KEGG=Os03t0418700-01
Chr03	irgsp1_rep	five_prime_UTR	17422111	17422460	.	+	.	Parent=Os03t0418700-01
Chr03	irgsp1_rep	CDS	17422461	17422611	.	+	0	Parent=Os03t0418700-01
Chr03	irgsp1_rep	CDS	17423270	17423337	.	+	2	Parent=Os03t0418700-01
Chr03	irgsp1_rep	CDS	17423446	17425110	.	+	0	Parent=Os03t0418700-01
Chr03	irgsp1_rep	CDS	17425210	17425351	.	+	0	Parent=Os03t0418700-01
Chr03	irgsp1_rep	CDS	17425856	17426607	.	+	2	Parent=Os03t0418700-01
Chr03	irgsp1_rep	three_prime_UTR	17426608	17426786	.	+	.	Parent=Os03t0418700-01
Chr03	irgsp1_rep	mRNA	17422176	17426743	.	+	.	ID=Os03t0418700-02;Name=Os03t0418700-02;Locus_id=Os03g0418700;Oryzabase Gene Name Synonym(s)=SLG7-like1;Note=Hypothetical conserved gene.;Transcript_evidence=AK099879 (DDBJ%2C Best hit);ORF_evidence=Q10JI7 (UniProt);NIAS_FLcDNA=J013111J07;Oryzabase=20434;Expression=AK099879;TENOR=Os03t0418700-02;KEGG=Os03t0418700-02
Chr03	irgsp1_rep	five_prime_UTR	17422176	17422460	.	+	.	Parent=Os03t0418700-02
Chr03	irgsp1_rep	CDS	17422461	17422614	.	+	0	Parent=Os03t0418700-02
Chr03	irgsp1_rep	CDS	17423270	17423337	.	+	2	Parent=Os03t0418700-02
Chr03	irgsp1_rep	CDS	17423446	17425110	.	+	0	Parent=Os03t0418700-02
Chr03	irgsp1_rep	CDS	17425210	17425351	.	+	0	Parent=Os03t0418700-02
Chr03	irgsp1_rep	CDS	17425856	17426607	.	+	2	Parent=Os03t0418700-02
Chr03	irgsp1_rep	three_prime_UTR	17426608	17426743	.	+	.	Parent=Os03t0418700-02
Chr03	irgsp1_rep	mRNA	17425847	17427783	.	-	.	ID=Os03t0418733-01;Name=Os03t0418733-01;Locus_id=Os03g0418733;Note=Hypothetical gene.;Transcript_evidence=AK288673 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090059D12;TENOR=Os03t0418733-01;KEGG=Os03t0418733-01
Chr03	irgsp1_rep	five_prime_UTR	17426604	17427783	.	-	.	Parent=Os03t0418733-01
Chr03	irgsp1_rep	CDS	17426304	17426603	.	-	0	Parent=Os03t0418733-01
Chr03	irgsp1_rep	three_prime_UTR	17425847	17426303	.	-	.	Parent=Os03t0418733-01
Chr03	irgsp1_rep	mRNA	17432846	17438950	.	-	.	ID=Os03t0418766-01;Name=Os03t0418766-01;Locus_id=Os03g0418766;Note=Hypothetical gene.;Transcript_evidence=AK288279 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090017N13;TENOR=Os03t0418766-01;KEGG=Os03t0418766-01
Chr03	irgsp1_rep	five_prime_UTR	17437773	17438950	.	-	.	Parent=Os03t0418766-01
Chr03	irgsp1_rep	CDS	17437551	17437772	.	-	0	Parent=Os03t0418766-01
Chr03	irgsp1_rep	three_prime_UTR	17432846	17437550	.	-	.	Parent=Os03t0418766-01
Chr03	irgsp1_rep	mRNA	17434440	17438559	.	+	.	ID=Os03t0418800-01;Name=Os03t0418800-01;Locus_id=Os03g0418800;Note=RNA recognition motif domain domain containing protein.;Transcript_evidence=AK101685 (DDBJ%2C Best hit);ORF_evidence=B8AK58 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: intracellular (GO:0005622),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nuclear transport factor 2 (IPR002075),Nucleotide-binding%2C alpha-beta plait (IPR012677),Nuclear transport factor 2%2C Eukaryote (IPR018222);NIAS_FLcDNA=J033058N07;TENOR=Os03t0418800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	17434440	17434542	.	+	0	Parent=Os03t0418800-01
Chr03	irgsp1_rep	CDS	17435761	17435810	.	+	2	Parent=Os03t0418800-01
Chr03	irgsp1_rep	CDS	17435893	17436030	.	+	0	Parent=Os03t0418800-01
Chr03	irgsp1_rep	CDS	17436109	17436406	.	+	0	Parent=Os03t0418800-01
Chr03	irgsp1_rep	CDS	17436489	17436721	.	+	2	Parent=Os03t0418800-01
Chr03	irgsp1_rep	CDS	17436864	17437035	.	+	0	Parent=Os03t0418800-01
Chr03	irgsp1_rep	CDS	17437119	17437240	.	+	2	Parent=Os03t0418800-01
Chr03	irgsp1_rep	CDS	17437308	17437373	.	+	0	Parent=Os03t0418800-01
Chr03	irgsp1_rep	CDS	17437581	17437644	.	+	0	Parent=Os03t0418800-01
Chr03	irgsp1_rep	CDS	17438059	17438384	.	+	2	Parent=Os03t0418800-01
Chr03	irgsp1_rep	three_prime_UTR	17438385	17438559	.	+	.	Parent=Os03t0418800-01
Chr03	irgsp1_rep	mRNA	17449417	17452606	.	+	.	ID=Os03t0419100-01;Name=Os03t0419100-01;Locus_id=Os03g0419100;Note=Protein of unknown function DUF1675 family protein.;Transcript_evidence=AK119969 (DDBJ%2C Best hit);ORF_evidence=NP_001150339.1 (RefSeq);InterPro=Protein of unknown function DUF1675 (IPR012463);NIAS_FLcDNA=002-184-E02;Expression=AK119969;TENOR=Os03t0419100-01;KEGG=Os03t0419100-01
Chr03	irgsp1_rep	five_prime_UTR	17449417	17449755	.	+	.	Parent=Os03t0419100-01
Chr03	irgsp1_rep	CDS	17449756	17450254	.	+	0	Parent=Os03t0419100-01
Chr03	irgsp1_rep	CDS	17452046	17452470	.	+	2	Parent=Os03t0419100-01
Chr03	irgsp1_rep	three_prime_UTR	17452471	17452606	.	+	.	Parent=Os03t0419100-01
Chr03	irgsp1_rep	mRNA	17449480	17452623	.	+	.	ID=Os03t0419100-02;Name=Os03t0419100-02;Locus_id=Os03g0419100;Note=Protein of unknown function DUF1675 family protein.;Transcript_evidence=AK073482 (DDBJ%2C Best hit);ORF_evidence=NP_001150339.1 (RefSeq);InterPro=Protein of unknown function DUF1675 (IPR012463);NIAS_FLcDNA=J033043P22;Expression=AK073482;TENOR=Os03t0419100-02;KEGG=Os03t0419100-02
Chr03	irgsp1_rep	five_prime_UTR	17449480	17449755	.	+	.	Parent=Os03t0419100-02
Chr03	irgsp1_rep	CDS	17449756	17450254	.	+	0	Parent=Os03t0419100-02
Chr03	irgsp1_rep	CDS	17452046	17452470	.	+	2	Parent=Os03t0419100-02
Chr03	irgsp1_rep	three_prime_UTR	17452471	17452623	.	+	.	Parent=Os03t0419100-02
Chr03	irgsp1_rep	mRNA	17453198	17456931	.	-	.	ID=Os03t0419200-01;Name=Os03t0419200-01;Locus_id=Os03g0419200;Note=Conserved hypothetical protein.;Transcript_evidence=AK064655 (DDBJ%2C Best hit);ORF_evidence=A3AJ61 (UniProt);NIAS_FLcDNA=002-114-F08;TENOR=Os03t0419200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	17456872	17456931	.	-	.	Parent=Os03t0419200-01
Chr03	irgsp1_rep	CDS	17456564	17456871	.	-	0	Parent=Os03t0419200-01
Chr03	irgsp1_rep	CDS	17455264	17455282	.	-	1	Parent=Os03t0419200-01
Chr03	irgsp1_rep	three_prime_UTR	17454756	17455263	.	-	.	Parent=Os03t0419200-01
Chr03	irgsp1_rep	three_prime_UTR	17454530	17454666	.	-	.	Parent=Os03t0419200-01
Chr03	irgsp1_rep	three_prime_UTR	17454065	17454380	.	-	.	Parent=Os03t0419200-01
Chr03	irgsp1_rep	three_prime_UTR	17453198	17453508	.	-	.	Parent=Os03t0419200-01
Chr03	irgsp1_rep	mRNA	17451861	17453822	.	-	.	ID=Os03t0419200-02;Name=Os03t0419200-02;Locus_id=Os03g0419200;Note=Hypothetical gene.;Transcript_evidence=AK106284 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=002-101-A06;Expression=AK106284;TENOR=Os03t0419200-02;KEGG=Os03t0419200-02
Chr03	irgsp1_rep	five_prime_UTR	17452257	17453822	.	-	.	Parent=Os03t0419200-02
Chr03	irgsp1_rep	CDS	17452011	17452256	.	-	0	Parent=Os03t0419200-02
Chr03	irgsp1_rep	three_prime_UTR	17451861	17452010	.	-	.	Parent=Os03t0419200-02
Chr03	irgsp1_rep	mRNA	17469253	17469873	.	-	.	ID=Os03t0419700-00;Name=Os03t0419700-00;Locus_id=Os03g0419700;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q75GC7 (UniProt);TENOR=Os03t0419700-00;KEGG=Os03t0419700-00
Chr03	irgsp1_rep	CDS	17469253	17469873	.	-	0	Parent=Os03t0419700-00
Chr03	irgsp1_rep	mRNA	17515060	17521880	.	-	.	ID=Os03t0421000-01;Name=Os03t0421000-01;Locus_id=Os03g0421000;Note=Zinc finger%2C FYVE/PHD-type domain containing protein.;Transcript_evidence=AK073684 (DDBJ%2C Best hit);ORF_evidence=B9F927 (UniProt);InterPro=Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J033060C22;Expression=AK073684;TENOR=Os03t0421000-01;KEGG=Os03t0421000-01
Chr03	irgsp1_rep	five_prime_UTR	17521769	17521880	.	-	.	Parent=Os03t0421000-01
Chr03	irgsp1_rep	CDS	17521730	17521768	.	-	0	Parent=Os03t0421000-01
Chr03	irgsp1_rep	CDS	17520636	17520721	.	-	0	Parent=Os03t0421000-01
Chr03	irgsp1_rep	CDS	17520178	17520272	.	-	1	Parent=Os03t0421000-01
Chr03	irgsp1_rep	CDS	17519711	17520088	.	-	2	Parent=Os03t0421000-01
Chr03	irgsp1_rep	CDS	17519446	17519610	.	-	2	Parent=Os03t0421000-01
Chr03	irgsp1_rep	CDS	17519153	17519267	.	-	2	Parent=Os03t0421000-01
Chr03	irgsp1_rep	CDS	17516724	17516948	.	-	1	Parent=Os03t0421000-01
Chr03	irgsp1_rep	CDS	17516489	17516607	.	-	1	Parent=Os03t0421000-01
Chr03	irgsp1_rep	CDS	17516205	17516293	.	-	2	Parent=Os03t0421000-01
Chr03	irgsp1_rep	three_prime_UTR	17516176	17516204	.	-	.	Parent=Os03t0421000-01
Chr03	irgsp1_rep	three_prime_UTR	17515060	17515377	.	-	.	Parent=Os03t0421000-01
Chr03	irgsp1_rep	mRNA	17525529	17528609	.	-	.	ID=Os03t0421100-01;Name=Os03t0421100-01;Locus_id=Os03g0421100;Note=Hypothetical conserved gene.;Transcript_evidence=AK288995 (DDBJ%2C Best hit);ORF_evidence=B8AK39 (UniProt);NIAS_FLcDNA=J090088A20;TENOR=Os03t0421100-01;KEGG=Os03t0421100-01
Chr03	irgsp1_rep	five_prime_UTR	17526011	17528609	.	-	.	Parent=Os03t0421100-01
Chr03	irgsp1_rep	CDS	17525690	17526010	.	-	0	Parent=Os03t0421100-01
Chr03	irgsp1_rep	three_prime_UTR	17525529	17525689	.	-	.	Parent=Os03t0421100-01
Chr03	irgsp1_rep	mRNA	17548967	17550443	.	-	.	ID=Os03t0421250-01;Name=Os03t0421250-01;Locus_id=Os03g0421250;Note=Hypothetical gene.;Transcript_evidence=AK241560 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065178N18;TENOR=Os03t0421250-01
Chr03	irgsp1_rep	five_prime_UTR	17550097	17550443	.	-	.	Parent=Os03t0421250-01
Chr03	irgsp1_rep	CDS	17550020	17550096	.	-	0	Parent=Os03t0421250-01
Chr03	irgsp1_rep	CDS	17548967	17549458	.	-	1	Parent=Os03t0421250-01
Chr03	irgsp1_rep	mRNA	17549537	17550448	.	+	.	ID=Os03t0421300-00;Name=Os03t0421300-00;Locus_id=Os03g0421300;Note=Hypothetical conserved gene.;Transcript_evidence=CT835213 (DDBJ%2C Best hit);ORF_evidence=Q10JG0 (UniProt);TENOR=Os03t0421300-00;KEGG=Os03t0421300-00
Chr03	irgsp1_rep	CDS	17549537	17549683	.	+	0	Parent=Os03t0421300-00
Chr03	irgsp1_rep	three_prime_UTR	17549684	17550448	.	+	.	Parent=Os03t0421300-00
Chr03	irgsp1_rep	mRNA	17550979	17556300	.	-	.	ID=Os03t0421400-01;Name=Os03t0421400-01;Locus_id=Os03g0421400;Note=Similar to band 7 family protein.;Transcript_evidence=AK103193 (DDBJ%2C Best hit);ORF_evidence=XP_002875209.1 (RefSeq);InterPro=Band 7 protein (IPR001107);NIAS_FLcDNA=J033121P04;TENOR=Os03t0421400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	17556232	17556300	.	-	.	Parent=Os03t0421400-01
Chr03	irgsp1_rep	CDS	17556049	17556231	.	-	0	Parent=Os03t0421400-01
Chr03	irgsp1_rep	CDS	17553994	17554096	.	-	0	Parent=Os03t0421400-01
Chr03	irgsp1_rep	CDS	17553842	17553913	.	-	2	Parent=Os03t0421400-01
Chr03	irgsp1_rep	CDS	17553638	17553672	.	-	2	Parent=Os03t0421400-01
Chr03	irgsp1_rep	three_prime_UTR	17553618	17553637	.	-	.	Parent=Os03t0421400-01
Chr03	irgsp1_rep	three_prime_UTR	17552975	17553133	.	-	.	Parent=Os03t0421400-01
Chr03	irgsp1_rep	three_prime_UTR	17552711	17552857	.	-	.	Parent=Os03t0421400-01
Chr03	irgsp1_rep	three_prime_UTR	17551899	17552114	.	-	.	Parent=Os03t0421400-01
Chr03	irgsp1_rep	three_prime_UTR	17551695	17551802	.	-	.	Parent=Os03t0421400-01
Chr03	irgsp1_rep	three_prime_UTR	17550979	17551611	.	-	.	Parent=Os03t0421400-01
Chr03	irgsp1_rep	mRNA	17550988	17556271	.	-	.	ID=Os03t0421400-02;Name=Os03t0421400-02;Locus_id=Os03g0421400;Note=Similar to band 7 family protein.;Transcript_evidence=AK064680 (DDBJ%2C Best hit);ORF_evidence=XP_002875209.1 (RefSeq);InterPro=Band 7 protein (IPR001107);NIAS_FLcDNA=002-115-H07;TENOR=Os03t0421400-02
Chr03	irgsp1_rep	five_prime_UTR	17556232	17556271	.	-	.	Parent=Os03t0421400-02
Chr03	irgsp1_rep	CDS	17556049	17556231	.	-	0	Parent=Os03t0421400-02
Chr03	irgsp1_rep	CDS	17553994	17554096	.	-	0	Parent=Os03t0421400-02
Chr03	irgsp1_rep	CDS	17553842	17553913	.	-	2	Parent=Os03t0421400-02
Chr03	irgsp1_rep	CDS	17553638	17553672	.	-	2	Parent=Os03t0421400-02
Chr03	irgsp1_rep	three_prime_UTR	17553618	17553637	.	-	.	Parent=Os03t0421400-02
Chr03	irgsp1_rep	three_prime_UTR	17552975	17553133	.	-	.	Parent=Os03t0421400-02
Chr03	irgsp1_rep	three_prime_UTR	17552711	17552857	.	-	.	Parent=Os03t0421400-02
Chr03	irgsp1_rep	three_prime_UTR	17551899	17552114	.	-	.	Parent=Os03t0421400-02
Chr03	irgsp1_rep	three_prime_UTR	17551695	17551802	.	-	.	Parent=Os03t0421400-02
Chr03	irgsp1_rep	three_prime_UTR	17550988	17551611	.	-	.	Parent=Os03t0421400-02
Chr03	irgsp1_rep	mRNA	17558704	17559363	.	+	.	ID=Os03t0421700-00;Name=Os03t0421700-00;Locus_id=Os03g0421700;Note=Similar to Fumarylacetoacetate hydrolase domain-containing protein 1.;Transcript_evidence=ab initio prediction;ORF_evidence=B6TV71 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Fumarylacetoacetase%2C C-terminal (IPR002529),Fumarylacetoacetase%2C C-terminal-related (IPR011234);TENOR=Os03t0421700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	17558704	17558820	.	+	0	Parent=Os03t0421700-00
Chr03	irgsp1_rep	CDS	17558949	17559123	.	+	0	Parent=Os03t0421700-00
Chr03	irgsp1_rep	CDS	17559329	17559363	.	+	2	Parent=Os03t0421700-00
Chr03	irgsp1_rep	mRNA	17569815	17572007	.	-	.	ID=Os03t0421800-01;Name=Os03t0421800-01;Locus_id=Os03g0421800;Note=X8 domain containing protein.;Transcript_evidence=AK099491 (DDBJ%2C Best hit);ORF_evidence=NP_001147226.1 (RefSeq);InterPro=X8 (IPR012946);NIAS_FLcDNA=J013026N15;Expression=AK099491;TENOR=Os03t0421800-01;KEGG=Os03t0421800-01
Chr03	irgsp1_rep	five_prime_UTR	17571914	17572007	.	-	.	Parent=Os03t0421800-01
Chr03	irgsp1_rep	CDS	17571844	17571913	.	-	0	Parent=Os03t0421800-01
Chr03	irgsp1_rep	CDS	17571445	17571678	.	-	2	Parent=Os03t0421800-01
Chr03	irgsp1_rep	CDS	17571229	17571262	.	-	2	Parent=Os03t0421800-01
Chr03	irgsp1_rep	CDS	17570079	17570307	.	-	1	Parent=Os03t0421800-01
Chr03	irgsp1_rep	three_prime_UTR	17569815	17570078	.	-	.	Parent=Os03t0421800-01
Chr03	irgsp1_rep	mRNA	17576062	17577060	.	-	.	ID=Os03t0422200-01;Name=Os03t0422200-01;Locus_id=Os03g0422200;Note=Hypothetical protein.;Transcript_evidence=AK107232 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-125-E05;Expression=AK107232;TENOR=Os03t0422200-01;KEGG=Os03t0422200-01
Chr03	irgsp1_rep	five_prime_UTR	17576509	17577060	.	-	.	Parent=Os03t0422200-01
Chr03	irgsp1_rep	CDS	17576146	17576508	.	-	0	Parent=Os03t0422200-01
Chr03	irgsp1_rep	three_prime_UTR	17576062	17576145	.	-	.	Parent=Os03t0422200-01
Chr03	irgsp1_rep	mRNA	17576402	17577124	.	+	.	ID=Os03t0422300-01;Name=Os03t0422300-01;Locus_id=Os03g0422300;Note=Conserved hypothetical protein.;Transcript_evidence=AK063543 (DDBJ%2C Best hit);ORF_evidence=Q6ATL9 (UniProt);NIAS_FLcDNA=001-117-C12;Expression=AK063543;TENOR=Os03t0422300-01;KEGG=Os03t0422300-01
Chr03	irgsp1_rep	five_prime_UTR	17576402	17576556	.	+	.	Parent=Os03t0422300-01
Chr03	irgsp1_rep	CDS	17576557	17576922	.	+	0	Parent=Os03t0422300-01
Chr03	irgsp1_rep	three_prime_UTR	17576923	17577124	.	+	.	Parent=Os03t0422300-01
Chr03	irgsp1_rep	mRNA	17588077	17589181	.	+	.	ID=Os03t0422600-00;Name=Os03t0422600-00;Locus_id=Os03g0422600;Note=Similar to Progesterone 5-beta-reductase.;Transcript_evidence=BT038542 (DDBJ);ORF_evidence=D6N9X1 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NAD(P)-binding domain (IPR016040);TENOR=Os03t0422600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	17588077	17588163	.	+	.	Parent=Os03t0422600-00
Chr03	irgsp1_rep	CDS	17588164	17588985	.	+	0	Parent=Os03t0422600-00
Chr03	irgsp1_rep	three_prime_UTR	17588986	17589181	.	+	.	Parent=Os03t0422600-00
Chr03	irgsp1_rep	mRNA	17598115	17598735	.	+	.	ID=Os03t0422702-00;Name=Os03t0422702-00;Locus_id=Os03g0422702;Note=Similar to predicted protein.;Transcript_evidence=EU945866 (DDBJ);ORF_evidence=NP_001144989.1 (RefSeq);InterPro=Transcription factor%2C TCP (IPR005333),Transcription factor TCP subgroup (IPR017887);TENOR=Os03t0422702-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	17598115	17598495	.	+	0	Parent=Os03t0422702-00
Chr03	irgsp1_rep	three_prime_UTR	17598496	17598735	.	+	.	Parent=Os03t0422702-00
Chr03	irgsp1_rep	mRNA	17599288	17603528	.	+	.	ID=Os03t0422800-01;Name=Os03t0422800-01;Locus_id=Os03g0422800;Note=Similar to D-mannose binding lectin family protein%2C expressed.;Transcript_evidence=AK101473 (DDBJ%2C Best hit);ORF_evidence=Q2RAY8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Epidermal growth factor-like%2C type 3 (IPR000742),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),PAN-1 domain (IPR003014),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033040L03;TENOR=Os03t0422800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	17599288	17599423	.	+	.	Parent=Os03t0422800-01
Chr03	irgsp1_rep	CDS	17599424	17599444	.	+	0	Parent=Os03t0422800-01
Chr03	irgsp1_rep	CDS	17601024	17603414	.	+	0	Parent=Os03t0422800-01
Chr03	irgsp1_rep	three_prime_UTR	17603415	17603528	.	+	.	Parent=Os03t0422800-01
Chr03	irgsp1_rep	mRNA	17605264	17608024	.	+	.	ID=Os03t0422900-00;Name=Os03t0422900-00;Locus_id=Os03g0422900;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=tplb0011j14 (Wheat FLcDNA);ORF_evidence=Q84MG3 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os03t0422900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	17605264	17605271	.	+	.	Parent=Os03t0422900-00
Chr03	irgsp1_rep	CDS	17605272	17606225	.	+	0	Parent=Os03t0422900-00
Chr03	irgsp1_rep	three_prime_UTR	17606226	17608024	.	+	.	Parent=Os03t0422900-00
Chr03	irgsp1_rep	mRNA	17611365	17613660	.	+	.	ID=Os03t0423000-01;Name=Os03t0423000-01;Locus_id=Os03g0423000;Oryzabase Gene Symbol Synonym(s)=OsFbox152%2C Os_F0251;Oryzabase Gene Name Synonym(s)=F-box protein 152;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK069736 (DDBJ%2C Best hit);ORF_evidence=B6T2Q5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023031J08;Oryzabase=16941;Expression=AK069736;TENOR=Os03t0423000-01;KEGG=Os03t0423000-01
Chr03	irgsp1_rep	five_prime_UTR	17611365	17611615	.	+	.	Parent=Os03t0423000-01
Chr03	irgsp1_rep	five_prime_UTR	17612689	17612765	.	+	.	Parent=Os03t0423000-01
Chr03	irgsp1_rep	CDS	17612766	17613518	.	+	0	Parent=Os03t0423000-01
Chr03	irgsp1_rep	three_prime_UTR	17613519	17613660	.	+	.	Parent=Os03t0423000-01
Chr03	irgsp1_rep	mRNA	17616255	17616740	.	-	.	ID=Os03t0423200-01;Name=Os03t0423200-01;Locus_id=Os03g0423200;Note=Oligosaccharide biosynthesis protein Alg14 like domain containing protein.;Transcript_evidence=AK063861 (DDBJ%2C Best hit);ORF_evidence=B6U4N4 (UniProt);InterPro=Oligosaccharide biosynthesis protein Alg14-like (IPR013969);NIAS_FLcDNA=001-122-D11;Expression=AK063861;TENOR=Os03t0423200-01;KEGG=Os03t0423200-01 (EC:2.4.1.141)
Chr03	irgsp1_rep	five_prime_UTR	17616739	17616740	.	-	.	Parent=Os03t0423200-01
Chr03	irgsp1_rep	CDS	17616562	17616738	.	-	0	Parent=Os03t0423200-01
Chr03	irgsp1_rep	three_prime_UTR	17616255	17616561	.	-	.	Parent=Os03t0423200-01
Chr03	irgsp1_rep	mRNA	17623509	17625094	.	-	.	ID=Os03t0423300-01;Name=Os03t0423300-01;Locus_id=Os03g0423300;Note=Similar to Stearoyl-acyl carrier protein desaturse (EC 1.14.99.6) (Fragment).;Transcript_evidence=AK070282 (DDBJ%2C Best hit);ORF_evidence=NP_001151143.1 (RefSeq);GO=Biological Process: fatty acid metabolic process (GO:0006631),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: acyl-[acyl-carrier-protein] desaturase activity (GO:0045300),Molecular Function: transition metal ion binding (GO:0046914);InterPro=Fatty acid desaturase%2C type 2 (IPR005067),Ferritin/ribonucleotide reductase-like (IPR009078),Ribonucleotide reductase-related (IPR012348);NIAS_FLcDNA=J023047A21;Expression=AK070282;TENOR=Os03t0423300-01;KEGG=Os03t0423300-01 (EC:1.14.19.2%2C EC:1.14.99.6)
Chr03	irgsp1_rep	five_prime_UTR	17625075	17625094	.	-	.	Parent=Os03t0423300-01
Chr03	irgsp1_rep	CDS	17624929	17625074	.	-	0	Parent=Os03t0423300-01
Chr03	irgsp1_rep	CDS	17623737	17624847	.	-	1	Parent=Os03t0423300-01
Chr03	irgsp1_rep	three_prime_UTR	17623509	17623736	.	-	.	Parent=Os03t0423300-01
Chr03	irgsp1_rep	mRNA	17669057	17674040	.	+	.	ID=Os03t0423800-01;Name=Os03t0423800-01;Locus_id=Os03g0423800;Oryzabase Gene Symbol Synonym(s)=OsMed8_1%2C Med8_1;Oryzabase Gene Name Synonym(s)=Mediator 8_1;Note=Hypothetical conserved gene.;Transcript_evidence=AK069431 (DDBJ%2C Best hit);ORF_evidence=Q84MG8 (UniProt);NIAS_FLcDNA=J023019B12;Oryzabase=20994;Expression=AK069431;TENOR=Os03t0423800-01;KEGG=Os03t0423800-01
Chr03	irgsp1_rep	five_prime_UTR	17669057	17669227	.	+	.	Parent=Os03t0423800-01
Chr03	irgsp1_rep	CDS	17669228	17669451	.	+	0	Parent=Os03t0423800-01
Chr03	irgsp1_rep	CDS	17669575	17669699	.	+	1	Parent=Os03t0423800-01
Chr03	irgsp1_rep	CDS	17670477	17670601	.	+	2	Parent=Os03t0423800-01
Chr03	irgsp1_rep	CDS	17670707	17670890	.	+	0	Parent=Os03t0423800-01
Chr03	irgsp1_rep	CDS	17671026	17671147	.	+	2	Parent=Os03t0423800-01
Chr03	irgsp1_rep	three_prime_UTR	17671148	17671995	.	+	.	Parent=Os03t0423800-01
Chr03	irgsp1_rep	three_prime_UTR	17672204	17672257	.	+	.	Parent=Os03t0423800-01
Chr03	irgsp1_rep	three_prime_UTR	17672357	17672563	.	+	.	Parent=Os03t0423800-01
Chr03	irgsp1_rep	three_prime_UTR	17672715	17672841	.	+	.	Parent=Os03t0423800-01
Chr03	irgsp1_rep	three_prime_UTR	17673617	17674040	.	+	.	Parent=Os03t0423800-01
Chr03	irgsp1_rep	mRNA	17674303	17677959	.	+	.	ID=Os03t0423850-01;Name=Os03t0423850-01;Locus_id=Os03g0423850;Note=Similar to Helicase-like protein.;Transcript_evidence=AK242611 (DDBJ%2C Best hit);ORF_evidence=NP_001052242.1 (RefSeq);GO=Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524);InterPro=DNA helicase (IPR003840);NIAS_FLcDNA=J090016H08;TENOR=Os03t0423850-01;KEGG=Os03t0423850-01
Chr03	irgsp1_rep	five_prime_UTR	17674303	17675049	.	+	.	Parent=Os03t0423850-01
Chr03	irgsp1_rep	five_prime_UTR	17675294	17675426	.	+	.	Parent=Os03t0423850-01
Chr03	irgsp1_rep	five_prime_UTR	17675689	17676330	.	+	.	Parent=Os03t0423850-01
Chr03	irgsp1_rep	five_prime_UTR	17676511	17676577	.	+	.	Parent=Os03t0423850-01
Chr03	irgsp1_rep	CDS	17676578	17677069	.	+	0	Parent=Os03t0423850-01
Chr03	irgsp1_rep	three_prime_UTR	17677070	17677073	.	+	.	Parent=Os03t0423850-01
Chr03	irgsp1_rep	three_prime_UTR	17677269	17677385	.	+	.	Parent=Os03t0423850-01
Chr03	irgsp1_rep	three_prime_UTR	17677518	17677959	.	+	.	Parent=Os03t0423850-01
Chr03	irgsp1_rep	mRNA	17686492	17688255	.	-	.	ID=Os03t0424000-01;Name=Os03t0424000-01;Locus_id=Os03g0424000;Note=Similar to U-box domain containing protein.;Transcript_evidence=AK107031 (DDBJ%2C Best hit);ORF_evidence=Q10JE1 (UniProt);NIAS_FLcDNA=002-121-B03;Expression=AK107031;TENOR=Os03t0424000-01;KEGG=Os03t0424000-01
Chr03	irgsp1_rep	five_prime_UTR	17687183	17688255	.	-	.	Parent=Os03t0424000-01
Chr03	irgsp1_rep	CDS	17687024	17687182	.	-	0	Parent=Os03t0424000-01
Chr03	irgsp1_rep	three_prime_UTR	17686492	17687023	.	-	.	Parent=Os03t0424000-01
Chr03	irgsp1_rep	mRNA	17680228	17688210	.	-	.	ID=Os03t0424000-02;Name=Os03t0424000-02;Locus_id=Os03g0424000;Note=Similar to U-box domain containing protein.;Transcript_evidence=AK067340 (DDBJ%2C Best hit);ORF_evidence=Q10JE1 (UniProt);NIAS_FLcDNA=J013106D20;TENOR=Os03t0424000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	17688081	17688210	.	-	.	Parent=Os03t0424000-02
Chr03	irgsp1_rep	five_prime_UTR	17687786	17687908	.	-	.	Parent=Os03t0424000-02
Chr03	irgsp1_rep	five_prime_UTR	17687033	17687155	.	-	.	Parent=Os03t0424000-02
Chr03	irgsp1_rep	five_prime_UTR	17686369	17686448	.	-	.	Parent=Os03t0424000-02
Chr03	irgsp1_rep	five_prime_UTR	17686005	17686052	.	-	.	Parent=Os03t0424000-02
Chr03	irgsp1_rep	five_prime_UTR	17685818	17685889	.	-	.	Parent=Os03t0424000-02
Chr03	irgsp1_rep	CDS	17685428	17685817	.	-	0	Parent=Os03t0424000-02
Chr03	irgsp1_rep	three_prime_UTR	17685268	17685427	.	-	.	Parent=Os03t0424000-02
Chr03	irgsp1_rep	three_prime_UTR	17683369	17683465	.	-	.	Parent=Os03t0424000-02
Chr03	irgsp1_rep	three_prime_UTR	17682233	17683280	.	-	.	Parent=Os03t0424000-02
Chr03	irgsp1_rep	three_prime_UTR	17680228	17682055	.	-	.	Parent=Os03t0424000-02
Chr03	irgsp1_rep	mRNA	17702709	17710049	.	-	.	ID=Os03t0424200-01;Name=Os03t0424200-01;Locus_id=Os03g0424200;CGSNL Gene Symbol=RLCK112;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 112;Oryzabase Gene Symbol Synonym(s)=OsPUB57%2C OsRLCK112;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 57%2C U-box protein 57%2C Receptor-like Cytoplasmic Kinase 112;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK069682 (DDBJ%2C Best hit);ORF_evidence=Q0DR28 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),U box domain (IPR003613),Tyrosine-protein kinase%2C active site (IPR008266),Protein kinase-like domain (IPR011009),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023029I01;Oryzabase=17848;Expression=AK069682;TENOR=Os03t0424200-01;KEGG=Os03t0424200-01
Chr03	irgsp1_rep	five_prime_UTR	17709854	17710049	.	-	.	Parent=Os03t0424200-01
Chr03	irgsp1_rep	five_prime_UTR	17709602	17709724	.	-	.	Parent=Os03t0424200-01
Chr03	irgsp1_rep	five_prime_UTR	17708712	17708834	.	-	.	Parent=Os03t0424200-01
Chr03	irgsp1_rep	five_prime_UTR	17707033	17707092	.	-	.	Parent=Os03t0424200-01
Chr03	irgsp1_rep	five_prime_UTR	17706448	17706539	.	-	.	Parent=Os03t0424200-01
Chr03	irgsp1_rep	five_prime_UTR	17705190	17706364	.	-	.	Parent=Os03t0424200-01
Chr03	irgsp1_rep	CDS	17705046	17705189	.	-	0	Parent=Os03t0424200-01
Chr03	irgsp1_rep	CDS	17704874	17704978	.	-	0	Parent=Os03t0424200-01
Chr03	irgsp1_rep	CDS	17704542	17704644	.	-	0	Parent=Os03t0424200-01
Chr03	irgsp1_rep	CDS	17704212	17704450	.	-	2	Parent=Os03t0424200-01
Chr03	irgsp1_rep	CDS	17703403	17704146	.	-	0	Parent=Os03t0424200-01
Chr03	irgsp1_rep	CDS	17703016	17703237	.	-	0	Parent=Os03t0424200-01
Chr03	irgsp1_rep	three_prime_UTR	17702709	17703015	.	-	.	Parent=Os03t0424200-01
Chr03	irgsp1_rep	mRNA	17712298	17714448	.	+	.	ID=Os03t0424300-00;Name=Os03t0424300-00;Locus_id=Os03g0424300;Note=Homeodomain-like domain containing protein.;Transcript_evidence=EU956045 (DDBJ);ORF_evidence=NP_001062562.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);TENOR=Os03t0424300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	17712298	17712678	.	+	0	Parent=Os03t0424300-00
Chr03	irgsp1_rep	CDS	17714054	17714131	.	+	0	Parent=Os03t0424300-00
Chr03	irgsp1_rep	three_prime_UTR	17714132	17714448	.	+	.	Parent=Os03t0424300-00
Chr03	irgsp1_rep	mRNA	17714875	17716765	.	+	.	ID=Os03t0424500-01;Name=Os03t0424500-01;Locus_id=Os03g0424500;Oryzabase Gene Symbol Synonym(s)=RPS4%2C RPS19%2C OsRPS4%2C OsRPS19;Oryzabase Gene Name Synonym(s)=Ribosomal protein S4%2C Ribosomal protein S19%2C ribosomal protein small subunit 4%2C ribosomal protein small subunit 19;Note=Similar to 40S ribosomal protein S19-3.;Transcript_evidence=AK067470 (DDBJ%2C Best hit),AK099047 (DDBJ%2C Best hit),AK104954 (DDBJ%2C Best hit);ORF_evidence=P40978 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S19e (IPR001266),Ribosomal protein S19e%2C conserved site (IPR018277);NIAS_FLcDNA=J013106H18,J013147E16,001-045-G11;Oryzabase=17697;TENOR=Os03t0424500-01
Chr03	irgsp1_rep	five_prime_UTR	17714875	17714960	.	+	.	Parent=Os03t0424500-01
Chr03	irgsp1_rep	CDS	17714961	17715050	.	+	0	Parent=Os03t0424500-01
Chr03	irgsp1_rep	CDS	17715859	17715949	.	+	0	Parent=Os03t0424500-01
Chr03	irgsp1_rep	CDS	17716095	17716278	.	+	2	Parent=Os03t0424500-01
Chr03	irgsp1_rep	CDS	17716357	17716432	.	+	1	Parent=Os03t0424500-01
Chr03	irgsp1_rep	three_prime_UTR	17716433	17716765	.	+	.	Parent=Os03t0424500-01
Chr03	irgsp1_rep	mRNA	17719246	17723059	.	-	.	ID=Os03t0424600-01;Name=Os03t0424600-01;Locus_id=Os03g0424600;Note=Conserved hypothetical protein.;Transcript_evidence=AK101882 (DDBJ%2C Best hit);ORF_evidence=Q84MG6 (UniProt);NIAS_FLcDNA=J033070K17;TENOR=Os03t0424600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	17722879	17723059	.	-	.	Parent=Os03t0424600-01
Chr03	irgsp1_rep	five_prime_UTR	17722285	17722301	.	-	.	Parent=Os03t0424600-01
Chr03	irgsp1_rep	CDS	17721880	17722284	.	-	0	Parent=Os03t0424600-01
Chr03	irgsp1_rep	three_prime_UTR	17720248	17721879	.	-	.	Parent=Os03t0424600-01
Chr03	irgsp1_rep	three_prime_UTR	17720091	17720159	.	-	.	Parent=Os03t0424600-01
Chr03	irgsp1_rep	three_prime_UTR	17719246	17719716	.	-	.	Parent=Os03t0424600-01
Chr03	irgsp1_rep	mRNA	17727085	17728835	.	+	.	ID=Os03t0424800-00;Name=Os03t0424800-00;Locus_id=Os03g0424800;Oryzabase Gene Name Synonym(s)=Ribosomal protein S19;Note=Similar to 40S ribosomal protein S19-3.;Transcript_evidence=CT828071 (DDBJ%2C Best hit);ORF_evidence=P40978 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S19e (IPR001266),Ribosomal protein S19e%2C conserved site (IPR018277);Oryzabase=17756;TENOR=Os03t0424800-00;KEGG=Os03t0424800-00
Chr03	irgsp1_rep	five_prime_UTR	17727085	17727097	.	+	.	Parent=Os03t0424800-00
Chr03	irgsp1_rep	CDS	17727098	17727187	.	+	0	Parent=Os03t0424800-00
Chr03	irgsp1_rep	CDS	17727996	17728086	.	+	0	Parent=Os03t0424800-00
Chr03	irgsp1_rep	CDS	17728232	17728415	.	+	2	Parent=Os03t0424800-00
Chr03	irgsp1_rep	CDS	17728500	17728575	.	+	1	Parent=Os03t0424800-00
Chr03	irgsp1_rep	three_prime_UTR	17728576	17728835	.	+	.	Parent=Os03t0424800-00
Chr03	irgsp1_rep	mRNA	17738066	17739441	.	+	.	ID=Os03t0425000-01;Name=Os03t0425000-01;Locus_id=Os03g0425000;CGSNL Gene Symbol=AL1;CGSNL Gene Name=ALBINO LEAF 1;Oryzabase Gene Symbol Synonym(s)=AL1a%2C AL1b%2C AL1c;Note=Similar to predicted protein.;Transcript_evidence=AK109392 (DDBJ%2C Best hit);ORF_evidence=NP_850176.1 (RefSeq);NIAS_FLcDNA=006-211-H08;Oryzabase=21097;TENOR=Os03t0425000-01
Chr03	irgsp1_rep	five_prime_UTR	17738066	17738198	.	+	.	Parent=Os03t0425000-01
Chr03	irgsp1_rep	CDS	17738199	17739441	.	+	0	Parent=Os03t0425000-01
Chr03	irgsp1_rep	mRNA	17738111	17741587	.	+	.	ID=Os03t0425000-02;Name=Os03t0425000-02;Locus_id=Os03g0425000;CGSNL Gene Symbol=AL1;CGSNL Gene Name=ALBINO LEAF 1;Oryzabase Gene Symbol Synonym(s)=AL1a%2C AL1b%2C AL1c;Note=RAP domain domain containing protein.;Transcript_evidence=AK120385 (DDBJ%2C Best hit);ORF_evidence=NP_850176.1 (RefSeq);InterPro=RAP domain (IPR013584);NIAS_FLcDNA=J013073I21;Oryzabase=21097;Expression=AK120385;TENOR=Os03t0425000-02;KEGG=Os03t0425000-02
Chr03	irgsp1_rep	five_prime_UTR	17738111	17738112	.	+	.	Parent=Os03t0425000-02
Chr03	irgsp1_rep	CDS	17738113	17738274	.	+	0	Parent=Os03t0425000-02
Chr03	irgsp1_rep	CDS	17738436	17739966	.	+	0	Parent=Os03t0425000-02
Chr03	irgsp1_rep	CDS	17740097	17740179	.	+	2	Parent=Os03t0425000-02
Chr03	irgsp1_rep	CDS	17740604	17740675	.	+	0	Parent=Os03t0425000-02
Chr03	irgsp1_rep	three_prime_UTR	17740676	17741587	.	+	.	Parent=Os03t0425000-02
Chr03	irgsp1_rep	mRNA	17738151	17741147	.	+	.	ID=Os03t0425000-03;Name=Os03t0425000-03;Locus_id=Os03g0425000;CGSNL Gene Symbol=AL1;CGSNL Gene Name=ALBINO LEAF 1;Oryzabase Gene Symbol Synonym(s)=AL1a%2C AL1b%2C AL1c;Note=Similar to predicted protein.;Transcript_evidence=AK064858 (DDBJ%2C Best hit);ORF_evidence=NP_850176.1 (RefSeq);InterPro=RAP domain (IPR013584);NIAS_FLcDNA=J013000H13;Oryzabase=21097;Expression=AK064858;TENOR=Os03t0425000-03;KEGG=Os03t0425000-03
Chr03	irgsp1_rep	five_prime_UTR	17738151	17738198	.	+	.	Parent=Os03t0425000-03
Chr03	irgsp1_rep	CDS	17738199	17739966	.	+	0	Parent=Os03t0425000-03
Chr03	irgsp1_rep	CDS	17740097	17740179	.	+	2	Parent=Os03t0425000-03
Chr03	irgsp1_rep	CDS	17740604	17740675	.	+	0	Parent=Os03t0425000-03
Chr03	irgsp1_rep	three_prime_UTR	17740676	17741147	.	+	.	Parent=Os03t0425000-03
Chr03	irgsp1_rep	mRNA	17742055	17743913	.	+	.	ID=Os03t0425100-01;Name=Os03t0425100-01;Locus_id=Os03g0425100;Note=Conserved hypothetical protein.;Transcript_evidence=AK070206 (DDBJ%2C Best hit);ORF_evidence=B8AK64 (UniProt);NIAS_FLcDNA=J023042E01;Expression=AK070206;TENOR=Os03t0425100-01;KEGG=Os03t0425100-01
Chr03	irgsp1_rep	five_prime_UTR	17742055	17742092	.	+	.	Parent=Os03t0425100-01
Chr03	irgsp1_rep	CDS	17742093	17742279	.	+	0	Parent=Os03t0425100-01
Chr03	irgsp1_rep	CDS	17742379	17742560	.	+	2	Parent=Os03t0425100-01
Chr03	irgsp1_rep	three_prime_UTR	17742561	17742855	.	+	.	Parent=Os03t0425100-01
Chr03	irgsp1_rep	three_prime_UTR	17743718	17743913	.	+	.	Parent=Os03t0425100-01
Chr03	irgsp1_rep	mRNA	17745407	17748496	.	-	.	ID=Os03t0425200-01;Name=Os03t0425200-01;Locus_id=Os03g0425200;Note=Inosine/uridine-preferring nucleoside hydrolase domain containing protein.;Transcript_evidence=AK101293 (DDBJ%2C Best hit);ORF_evidence=NP_001150443.1 (RefSeq);InterPro=Inosine/uridine-preferring nucleoside hydrolase domain (IPR001910),Inosine/uridine-preferring nucleoside hydrolase (IPR023186);NIAS_FLcDNA=J033033G23;Expression=AK101293;TENOR=Os03t0425200-01;KEGG=Os03t0425200-01
Chr03	irgsp1_rep	five_prime_UTR	17748351	17748496	.	-	.	Parent=Os03t0425200-01
Chr03	irgsp1_rep	CDS	17748302	17748350	.	-	0	Parent=Os03t0425200-01
Chr03	irgsp1_rep	CDS	17748091	17748206	.	-	2	Parent=Os03t0425200-01
Chr03	irgsp1_rep	CDS	17747887	17747946	.	-	0	Parent=Os03t0425200-01
Chr03	irgsp1_rep	CDS	17747415	17747600	.	-	0	Parent=Os03t0425200-01
Chr03	irgsp1_rep	CDS	17747211	17747315	.	-	0	Parent=Os03t0425200-01
Chr03	irgsp1_rep	CDS	17747011	17747107	.	-	0	Parent=Os03t0425200-01
Chr03	irgsp1_rep	CDS	17746569	17746676	.	-	2	Parent=Os03t0425200-01
Chr03	irgsp1_rep	CDS	17746288	17746423	.	-	2	Parent=Os03t0425200-01
Chr03	irgsp1_rep	CDS	17745646	17745757	.	-	1	Parent=Os03t0425200-01
Chr03	irgsp1_rep	three_prime_UTR	17745407	17745645	.	-	.	Parent=Os03t0425200-01
Chr03	irgsp1_rep	mRNA	17745404	17748460	.	-	.	ID=Os03t0425200-02;Name=Os03t0425200-02;Locus_id=Os03g0425200;Note=Inosine/uridine-preferring nucleoside hydrolase domain containing protein.;Transcript_evidence=AK061895 (DDBJ%2C Best hit);ORF_evidence=NP_001150443.1 (RefSeq);InterPro=Inosine/uridine-preferring nucleoside hydrolase domain (IPR001910),Inosine/uridine-preferring nucleoside hydrolase (IPR023186);NIAS_FLcDNA=001-041-G08;TENOR=Os03t0425200-02
Chr03	irgsp1_rep	five_prime_UTR	17748351	17748460	.	-	.	Parent=Os03t0425200-02
Chr03	irgsp1_rep	CDS	17748302	17748350	.	-	0	Parent=Os03t0425200-02
Chr03	irgsp1_rep	CDS	17748091	17748206	.	-	2	Parent=Os03t0425200-02
Chr03	irgsp1_rep	CDS	17747887	17747946	.	-	0	Parent=Os03t0425200-02
Chr03	irgsp1_rep	CDS	17747415	17747600	.	-	0	Parent=Os03t0425200-02
Chr03	irgsp1_rep	CDS	17747211	17747315	.	-	0	Parent=Os03t0425200-02
Chr03	irgsp1_rep	CDS	17747011	17747107	.	-	0	Parent=Os03t0425200-02
Chr03	irgsp1_rep	CDS	17746569	17746676	.	-	2	Parent=Os03t0425200-02
Chr03	irgsp1_rep	CDS	17746288	17746423	.	-	2	Parent=Os03t0425200-02
Chr03	irgsp1_rep	CDS	17745646	17745757	.	-	1	Parent=Os03t0425200-02
Chr03	irgsp1_rep	three_prime_UTR	17745404	17745645	.	-	.	Parent=Os03t0425200-02
Chr03	irgsp1_rep	mRNA	17754818	17761094	.	+	.	ID=Os03t0425300-01;Name=Os03t0425300-01;Locus_id=Os03g0425300;CGSNL Gene Symbol=DGK5;CGSNL Gene Name=DIACYLGLYCEROL KINASE 5;Oryzabase Gene Symbol Synonym(s)=OsDGK5;Oryzabase Gene Name Synonym(s)=Diacylglycerol kinase 5;Note=Similar to DGK1 (DIACYLGLYCEROL KINASE1)%3B calcium ion binding / diacylglycerol kinase.;Transcript_evidence=AK120530 (DDBJ%2C Best hit);ORF_evidence=NP_196409.1 (RefSeq);GO=Biological Process: intracellular signal transduction (GO:0035556);InterPro=Protein kinase C-like%2C phorbol ester/diacylglycerol binding (IPR002219),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J013127H10;Oryzabase=23314;TENOR=Os03t0425300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	17754818	17754933	.	+	.	Parent=Os03t0425300-01
Chr03	irgsp1_rep	five_prime_UTR	17756606	17756661	.	+	.	Parent=Os03t0425300-01
Chr03	irgsp1_rep	CDS	17756662	17757933	.	+	0	Parent=Os03t0425300-01
Chr03	irgsp1_rep	three_prime_UTR	17757934	17758951	.	+	.	Parent=Os03t0425300-01
Chr03	irgsp1_rep	three_prime_UTR	17759018	17759094	.	+	.	Parent=Os03t0425300-01
Chr03	irgsp1_rep	three_prime_UTR	17759738	17759857	.	+	.	Parent=Os03t0425300-01
Chr03	irgsp1_rep	three_prime_UTR	17759953	17760117	.	+	.	Parent=Os03t0425300-01
Chr03	irgsp1_rep	three_prime_UTR	17760193	17760330	.	+	.	Parent=Os03t0425300-01
Chr03	irgsp1_rep	three_prime_UTR	17760449	17761094	.	+	.	Parent=Os03t0425300-01
Chr03	irgsp1_rep	mRNA	17757829	17761133	.	+	.	ID=Os03t0425300-02;Name=Os03t0425300-02;Locus_id=Os03g0425300;CGSNL Gene Symbol=DGK5;CGSNL Gene Name=DIACYLGLYCEROL KINASE 5;Oryzabase Gene Symbol Synonym(s)=OsDGK5;Oryzabase Gene Name Synonym(s)=Diacylglycerol kinase 5;Note=Similar to Diacylglycerol kinase 1 (EC 2.7.1.107) (Diglyceride kinase 1) (DGK 1) (DAG kinase 1).;Transcript_evidence=AK059684 (DDBJ%2C Best hit);ORF_evidence=NP_196409.1 (RefSeq);GO=Biological Process: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway (GO:0007205),Molecular Function: diacylglycerol kinase activity (GO:0004143);InterPro=Diacylglycerol kinase%2C accessory domain (IPR000756),Diacylglycerol kinase%2C catalytic domain (IPR001206);NIAS_FLcDNA=001-032-A02;Oryzabase=23314;Expression=AK059684;TENOR=Os03t0425300-02;KEGG=Os03t0425300-02 (EC:2.7.1.107)
Chr03	irgsp1_rep	CDS	17757829	17757864	.	+	0	Parent=Os03t0425300-02
Chr03	irgsp1_rep	CDS	17758585	17758951	.	+	0	Parent=Os03t0425300-02
Chr03	irgsp1_rep	CDS	17759018	17759094	.	+	2	Parent=Os03t0425300-02
Chr03	irgsp1_rep	CDS	17759738	17759857	.	+	0	Parent=Os03t0425300-02
Chr03	irgsp1_rep	CDS	17759953	17760117	.	+	0	Parent=Os03t0425300-02
Chr03	irgsp1_rep	CDS	17760193	17760330	.	+	0	Parent=Os03t0425300-02
Chr03	irgsp1_rep	CDS	17760449	17760598	.	+	0	Parent=Os03t0425300-02
Chr03	irgsp1_rep	three_prime_UTR	17760599	17761133	.	+	.	Parent=Os03t0425300-02
Chr03	irgsp1_rep	mRNA	17774288	17776246	.	-	.	ID=Os03t0425450-00;Name=Os03t0425450-00;Locus_id=Os03g0425450;Note=Hypothetical gene.;Transcript_evidence=BT054437 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0425450-00;KEGG=Os03t0425450-00
Chr03	irgsp1_rep	five_prime_UTR	17775692	17776246	.	-	.	Parent=Os03t0425450-00
Chr03	irgsp1_rep	CDS	17775685	17775691	.	-	0	Parent=Os03t0425450-00
Chr03	irgsp1_rep	CDS	17774288	17775177	.	-	2	Parent=Os03t0425450-00
Chr03	irgsp1_rep	mRNA	17774284	17776497	.	+	.	ID=Os03t0425600-00;Name=Os03t0425600-00;Locus_id=Os03g0425600;Note=UDP-glucose dehydrogenase.;Transcript_evidence=AK250405 (DDBJ);ORF_evidence=B6TBY8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: NAD binding (GO:0051287);InterPro=UDP-glucose/GDP-mannose dehydrogenase%2C N-terminal (IPR001732),6-phosphogluconate dehydrogenase%2C C-terminal-like (IPR008927),UDP-glucose/GDP-mannose dehydrogenase%2C dimerisation (IPR014026),UDP-glucose/GDP-mannose dehydrogenase%2C C-terminal (IPR014027),NAD(P)-binding domain (IPR016040),Nucleotide sugar dehydrogenase (IPR017476),CytoChrome c1%2C transmembrane anchor%2C C-terminal (IPR021157);TENOR=Os03t0425600-00;KEGG=Os03t0425600-00 (EC:1.1.1.22)
Chr03	irgsp1_rep	five_prime_UTR	17774284	17774290	.	+	.	Parent=Os03t0425600-00
Chr03	irgsp1_rep	CDS	17774291	17775187	.	+	0	Parent=Os03t0425600-00
Chr03	irgsp1_rep	CDS	17775696	17776244	.	+	0	Parent=Os03t0425600-00
Chr03	irgsp1_rep	three_prime_UTR	17776245	17776497	.	+	.	Parent=Os03t0425600-00
Chr03	irgsp1_rep	mRNA	17780416	17784103	.	+	.	ID=Os03t0425800-01;Name=Os03t0425800-01;Locus_id=Os03g0425800;Oryzabase Gene Name Synonym(s)=MYB domain protein;Note=SANT domain%2C DNA binding domain containing protein.;Transcript_evidence=AK100427 (DDBJ%2C Best hit);ORF_evidence=B9F947 (UniProt);GO=Molecular Function: DNA binding (GO:0003677);InterPro=SANT domain%2C DNA binding (IPR001005);NIAS_FLcDNA=J023088D05;Oryzabase=15977;TENOR=Os03t0425800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	17780416	17780416	.	+	.	Parent=Os03t0425800-01
Chr03	irgsp1_rep	CDS	17780417	17780539	.	+	0	Parent=Os03t0425800-01
Chr03	irgsp1_rep	CDS	17781652	17781799	.	+	0	Parent=Os03t0425800-01
Chr03	irgsp1_rep	CDS	17781869	17782123	.	+	2	Parent=Os03t0425800-01
Chr03	irgsp1_rep	CDS	17782207	17783372	.	+	2	Parent=Os03t0425800-01
Chr03	irgsp1_rep	three_prime_UTR	17783373	17784103	.	+	.	Parent=Os03t0425800-01
Chr03	irgsp1_rep	mRNA	17787331	17789122	.	-	.	ID=Os03t0425900-01;Name=Os03t0425900-01;Locus_id=Os03g0425900;CGSNL Gene Symbol=DLN89%2C DLN92;CGSNL Gene Name=DLN REPRESSOR 89%2C DLN REPRESSOR 92;Oryzabase Gene Symbol Synonym(s)=OsDLN89%2C OsDLN92;Oryzabase Gene Name Synonym(s)=DLN repressor 89%2C DLN motif protein 89%2C DLN repressor 92%2C DLN motif protein 92;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK105583 (DDBJ%2C Best hit);ORF_evidence=A2XI67 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=001-128-E09;Oryzabase=23184,23185;Expression=AK105583;TENOR=Os03t0425900-01;KEGG=Os03t0425900-01
Chr03	irgsp1_rep	five_prime_UTR	17788911	17789122	.	-	.	Parent=Os03t0425900-01
Chr03	irgsp1_rep	CDS	17787657	17788910	.	-	0	Parent=Os03t0425900-01
Chr03	irgsp1_rep	three_prime_UTR	17787331	17787656	.	-	.	Parent=Os03t0425900-01
Chr03	irgsp1_rep	mRNA	17804694	17805965	.	-	.	ID=Os03t0426300-00;Name=Os03t0426300-00;Locus_id=Os03g0426300;CGSNL Gene Symbol=RLCK113;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 113;Oryzabase Gene Symbol Synonym(s)=OsRLCK113;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 113;Note=Similar to H0315F07.2 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q25A00 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);Oryzabase=18819;TENOR=Os03t0426300-00
Chr03	irgsp1_rep	CDS	17805790	17805965	.	-	0	Parent=Os03t0426300-00
Chr03	irgsp1_rep	CDS	17805302	17805431	.	-	1	Parent=Os03t0426300-00
Chr03	irgsp1_rep	CDS	17804694	17804945	.	-	0	Parent=Os03t0426300-00
Chr03	irgsp1_rep	mRNA	17809791	17810736	.	+	.	ID=Os03t0426350-00;Name=Os03t0426350-00;Locus_id=Os03g0426350;Note=Conserved hypothetical protein.;Transcript_evidence=CT841872 (DDBJ%2C Best hit);ORF_evidence=NP_001176213.1 (RefSeq);TENOR=Os03t0426350-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	17809791	17809905	.	+	.	Parent=Os03t0426350-00
Chr03	irgsp1_rep	CDS	17809906	17810430	.	+	0	Parent=Os03t0426350-00
Chr03	irgsp1_rep	three_prime_UTR	17810431	17810736	.	+	.	Parent=Os03t0426350-00
Chr03	irgsp1_rep	mRNA	17824178	17827704	.	+	.	ID=Os03t0426800-01;Name=Os03t0426800-01;Locus_id=Os03g0426800;Note=Membrane-anchored ubiquitin-fold protein%2C HCG-1 domain containing protein.;Transcript_evidence=AK099511 (DDBJ%2C Best hit);ORF_evidence=Q75GT2 (UniProt);InterPro=Membrane-anchored ubiquitin-fold protein%2C HCG-1 (IPR017000),Ubiquitin supergroup (IPR019955);NIAS_FLcDNA=J013029F19;Expression=AK099511;TENOR=Os03t0426800-01;KEGG=Os03t0426800-01
Chr03	irgsp1_rep	five_prime_UTR	17824178	17824416	.	+	.	Parent=Os03t0426800-01
Chr03	irgsp1_rep	five_prime_UTR	17824502	17824523	.	+	.	Parent=Os03t0426800-01
Chr03	irgsp1_rep	CDS	17824524	17824659	.	+	0	Parent=Os03t0426800-01
Chr03	irgsp1_rep	CDS	17827181	17827348	.	+	2	Parent=Os03t0426800-01
Chr03	irgsp1_rep	CDS	17827430	17827485	.	+	2	Parent=Os03t0426800-01
Chr03	irgsp1_rep	three_prime_UTR	17827486	17827704	.	+	.	Parent=Os03t0426800-01
Chr03	irgsp1_rep	mRNA	17832202	17839049	.	+	.	ID=Os03t0426900-01;Name=Os03t0426900-01;Locus_id=Os03g0426900;CGSNL Gene Symbol=CLPB-C;CGSNL Gene Name=CLASS I CLP ATPASE B-C;Oryzabase Gene Symbol Synonym(s)=ClpB-c%2C OsClpB-c;Oryzabase Gene Name Synonym(s)=class I Clp ATPase B-C%2C ClpB-chloroplastic%2C ClpB/Hsp100 chloroplastic isoform;Note=Similar to Heat shock protein 101.;Transcript_evidence=AK069123 (DDBJ%2C Best hit);ORF_evidence=Q4LDR0 (UniProt);GO=Biological Process: response to heat (GO:0009408),Biological Process: protein processing (GO:0016485),Biological Process: protein metabolic process (GO:0019538),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=Chaperonin ClpA/B (IPR001270),ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),Clp%2C N-terminal (IPR004176),ATPase%2C AAA-2 (IPR013093),Chaperonin ClpB (IPR017730),Chaperonin ClpA/B%2C conserved site (IPR018368),Clp ATPase%2C C-terminal (IPR019489),Double Clp-N motif (IPR023150);NIAS_FLcDNA=J023007C17;Oryzabase=8943;Expression=AK069123;TENOR=Os03t0426900-01;KEGG=Os03t0426900-01
Chr03	irgsp1_rep	five_prime_UTR	17832202	17832425	.	+	.	Parent=Os03t0426900-01
Chr03	irgsp1_rep	five_prime_UTR	17832531	17832542	.	+	.	Parent=Os03t0426900-01
Chr03	irgsp1_rep	CDS	17832543	17832791	.	+	0	Parent=Os03t0426900-01
Chr03	irgsp1_rep	CDS	17833051	17833269	.	+	0	Parent=Os03t0426900-01
Chr03	irgsp1_rep	CDS	17833414	17833651	.	+	0	Parent=Os03t0426900-01
Chr03	irgsp1_rep	CDS	17834822	17835017	.	+	2	Parent=Os03t0426900-01
Chr03	irgsp1_rep	CDS	17835096	17835150	.	+	1	Parent=Os03t0426900-01
Chr03	irgsp1_rep	CDS	17835703	17835853	.	+	0	Parent=Os03t0426900-01
Chr03	irgsp1_rep	CDS	17836709	17837017	.	+	2	Parent=Os03t0426900-01
Chr03	irgsp1_rep	CDS	17837158	17837423	.	+	2	Parent=Os03t0426900-01
Chr03	irgsp1_rep	CDS	17837519	17838445	.	+	0	Parent=Os03t0426900-01
Chr03	irgsp1_rep	CDS	17838594	17838920	.	+	0	Parent=Os03t0426900-01
Chr03	irgsp1_rep	three_prime_UTR	17838921	17839049	.	+	.	Parent=Os03t0426900-01
Chr03	irgsp1_rep	mRNA	17834925	17839082	.	+	.	ID=Os03t0426900-02;Name=Os03t0426900-02;Locus_id=Os03g0426900;CGSNL Gene Symbol=CLPB-C;CGSNL Gene Name=CLASS I CLP ATPASE B-C;Oryzabase Gene Symbol Synonym(s)=ClpB-c%2C OsClpB-c;Oryzabase Gene Name Synonym(s)=class I Clp ATPase B-C%2C ClpB-chloroplastic%2C ClpB/Hsp100 chloroplastic isoform;Note=Similar to APG6/CLPB-P/CLPB3 (ALBINO AND PALE GREEN 6)%3B ATP binding / ATPase.;Transcript_evidence=AK060637 (DDBJ%2C Best hit);ORF_evidence=NP_568314.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=Chaperonin ClpA/B (IPR001270),ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-2 (IPR013093),Chaperonin ClpA/B%2C conserved site (IPR018368),Clp ATPase%2C C-terminal (IPR019489);NIAS_FLcDNA=001-027-D01;Oryzabase=8943;Expression=AK060637;TENOR=Os03t0426900-02;KEGG=Os03t0426900-02
Chr03	irgsp1_rep	five_prime_UTR	17834925	17834925	.	+	.	Parent=Os03t0426900-02
Chr03	irgsp1_rep	CDS	17834926	17835017	.	+	0	Parent=Os03t0426900-02
Chr03	irgsp1_rep	CDS	17835096	17835150	.	+	1	Parent=Os03t0426900-02
Chr03	irgsp1_rep	CDS	17835703	17835853	.	+	0	Parent=Os03t0426900-02
Chr03	irgsp1_rep	CDS	17836709	17837017	.	+	2	Parent=Os03t0426900-02
Chr03	irgsp1_rep	CDS	17837158	17837423	.	+	2	Parent=Os03t0426900-02
Chr03	irgsp1_rep	CDS	17837519	17838445	.	+	0	Parent=Os03t0426900-02
Chr03	irgsp1_rep	CDS	17838594	17838920	.	+	0	Parent=Os03t0426900-02
Chr03	irgsp1_rep	three_prime_UTR	17838921	17839082	.	+	.	Parent=Os03t0426900-02
Chr03	irgsp1_rep	mRNA	17840098	17844363	.	-	.	ID=Os03t0427000-01;Name=Os03t0427000-01;Locus_id=Os03g0427000;Note=Similar to Circadian clock coupling factor ZGT.;Transcript_evidence=AK069737 (DDBJ%2C Best hit);ORF_evidence=B4F853 (UniProt);NIAS_FLcDNA=J023030O19;Expression=AK069737;TENOR=Os03t0427000-01;KEGG=Os03t0427000-01
Chr03	irgsp1_rep	five_prime_UTR	17844085	17844363	.	-	.	Parent=Os03t0427000-01
Chr03	irgsp1_rep	five_prime_UTR	17843680	17843752	.	-	.	Parent=Os03t0427000-01
Chr03	irgsp1_rep	CDS	17842936	17843679	.	-	0	Parent=Os03t0427000-01
Chr03	irgsp1_rep	three_prime_UTR	17842917	17842935	.	-	.	Parent=Os03t0427000-01
Chr03	irgsp1_rep	three_prime_UTR	17840098	17840406	.	-	.	Parent=Os03t0427000-01
Chr03	irgsp1_rep	mRNA	17850708	17853697	.	-	.	ID=Os03t0427100-01;Name=Os03t0427100-01;Locus_id=Os03g0427100;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK111492 (DDBJ%2C Best hit);ORF_evidence=NP_974376.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J013000B10;Expression=AK111492;TENOR=Os03t0427100-01;KEGG=Os03t0427100-01
Chr03	irgsp1_rep	five_prime_UTR	17853567	17853697	.	-	.	Parent=Os03t0427100-01
Chr03	irgsp1_rep	five_prime_UTR	17852618	17852738	.	-	.	Parent=Os03t0427100-01
Chr03	irgsp1_rep	five_prime_UTR	17851763	17851833	.	-	.	Parent=Os03t0427100-01
Chr03	irgsp1_rep	CDS	17850959	17851762	.	-	0	Parent=Os03t0427100-01
Chr03	irgsp1_rep	three_prime_UTR	17850708	17850958	.	-	.	Parent=Os03t0427100-01
Chr03	irgsp1_rep	mRNA	17864282	17866204	.	+	.	ID=Os03t0427300-01;Name=Os03t0427300-01;Locus_id=Os03g0427300;CGSNL Gene Symbol=GLUA3;CGSNL Gene Name=GLUTELIN SUBFAMILY A3 FROM WILD RICE SPECIES;Oryzabase Gene Symbol Synonym(s)=Glua3*%2C GLUA-3%2C GT22%2C GT3%2C Glu21%2C GluA-3%2C OsEnS-47%2C EnS-47%2C GLU3;Oryzabase Gene Name Synonym(s)=Glutelin subfamily A3 from wild rice species%2C Glutelin type-A 3 precursor%2C Glutelin type-A 3%2C Glutelin type-A 3 acidic chain%2C Glutelin type-A 3 basic chain%2C Rice glutelin-21%2C glutelin-21%2C endosperm-specific gene 47%2C glutelin 3;Note=Glutelin type-A III precursor.;Transcript_evidence=AK107271 (DDBJ%2C Best hit);ORF_evidence=Q09151 (UniProt);GO=Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=11-S seed storage protein%2C plant (IPR006044),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),11-S seed storage protein%2C conserved site (IPR022379);NIAS_FLcDNA=002-125-H12;Oryzabase=139;Expression=AK107271;TENOR=Os03t0427300-01;KEGG=Os03t0427300-01
Chr03	irgsp1_rep	five_prime_UTR	17864282	17864310	.	+	.	Parent=Os03t0427300-01
Chr03	irgsp1_rep	CDS	17864311	17864638	.	+	0	Parent=Os03t0427300-01
Chr03	irgsp1_rep	CDS	17864719	17864993	.	+	2	Parent=Os03t0427300-01
Chr03	irgsp1_rep	CDS	17865105	17865584	.	+	0	Parent=Os03t0427300-01
Chr03	irgsp1_rep	CDS	17865662	17866069	.	+	0	Parent=Os03t0427300-01
Chr03	irgsp1_rep	three_prime_UTR	17866070	17866204	.	+	.	Parent=Os03t0427300-01
Chr03	irgsp1_rep	mRNA	17884893	17891905	.	+	.	ID=Os03t0427900-01;Name=Os03t0427900-01;Locus_id=Os03g0427900;Oryzabase Gene Symbol Synonym(s)=OsPUB1%2C OsUFD2;Oryzabase Gene Name Synonym(s)=ubiquitin fusion degradation protein-2%2C plant U-box-containing protein 1%2C U-box protein 1;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK242886 (DDBJ%2C Best hit);ORF_evidence=NP_568313.2 (RefSeq);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: ubiquitin-ubiquitin ligase activity (GO:0034450);InterPro=U box domain (IPR003613),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Ubiquitin conjugation factor E4%2C core (IPR019474);NIAS_FLcDNA=J090079I23;Oryzabase=17796;TENOR=Os03t0427900-01;KEGG=Os03t0427900-01 (EC:6.3.2.19)
Chr03	irgsp1_rep	five_prime_UTR	17884893	17885047	.	+	.	Parent=Os03t0427900-01
Chr03	irgsp1_rep	CDS	17885048	17885895	.	+	0	Parent=Os03t0427900-01
Chr03	irgsp1_rep	CDS	17886536	17886740	.	+	1	Parent=Os03t0427900-01
Chr03	irgsp1_rep	CDS	17887256	17887407	.	+	0	Parent=Os03t0427900-01
Chr03	irgsp1_rep	CDS	17887514	17887805	.	+	1	Parent=Os03t0427900-01
Chr03	irgsp1_rep	CDS	17888015	17888170	.	+	0	Parent=Os03t0427900-01
Chr03	irgsp1_rep	CDS	17888769	17888972	.	+	0	Parent=Os03t0427900-01
Chr03	irgsp1_rep	CDS	17889083	17889195	.	+	0	Parent=Os03t0427900-01
Chr03	irgsp1_rep	CDS	17889286	17889400	.	+	1	Parent=Os03t0427900-01
Chr03	irgsp1_rep	CDS	17889501	17889590	.	+	0	Parent=Os03t0427900-01
Chr03	irgsp1_rep	CDS	17889671	17889874	.	+	0	Parent=Os03t0427900-01
Chr03	irgsp1_rep	CDS	17889972	17890067	.	+	0	Parent=Os03t0427900-01
Chr03	irgsp1_rep	CDS	17890302	17890424	.	+	0	Parent=Os03t0427900-01
Chr03	irgsp1_rep	CDS	17890516	17890608	.	+	0	Parent=Os03t0427900-01
Chr03	irgsp1_rep	CDS	17890685	17890849	.	+	0	Parent=Os03t0427900-01
Chr03	irgsp1_rep	CDS	17891387	17891476	.	+	0	Parent=Os03t0427900-01
Chr03	irgsp1_rep	CDS	17891564	17891728	.	+	0	Parent=Os03t0427900-01
Chr03	irgsp1_rep	three_prime_UTR	17891729	17891905	.	+	.	Parent=Os03t0427900-01
Chr03	irgsp1_rep	mRNA	17892890	17894183	.	+	.	ID=Os03t0428000-01;Name=Os03t0428000-01;Locus_id=Os03g0428000;Note=Conserved hypothetical protein.;Transcript_evidence=AK062841 (DDBJ%2C Best hit);ORF_evidence=B9EWN2 (UniProt);NIAS_FLcDNA=001-107-H05;TENOR=Os03t0428000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	17892890	17893304	.	+	.	Parent=Os03t0428000-01
Chr03	irgsp1_rep	CDS	17893305	17893502	.	+	0	Parent=Os03t0428000-01
Chr03	irgsp1_rep	three_prime_UTR	17893503	17893549	.	+	.	Parent=Os03t0428000-01
Chr03	irgsp1_rep	three_prime_UTR	17894021	17894183	.	+	.	Parent=Os03t0428000-01
Chr03	irgsp1_rep	mRNA	17892891	17895141	.	+	.	ID=Os03t0428000-02;Name=Os03t0428000-02;Locus_id=Os03g0428000;Note=Conserved hypothetical protein.;Transcript_evidence=AK106671 (DDBJ%2C Best hit);ORF_evidence=NP_001146831.1 (RefSeq);NIAS_FLcDNA=002-114-A01;TENOR=Os03t0428000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	17892891	17893062	.	+	.	Parent=Os03t0428000-02
Chr03	irgsp1_rep	five_prime_UTR	17893131	17893549	.	+	.	Parent=Os03t0428000-02
Chr03	irgsp1_rep	five_prime_UTR	17894021	17894205	.	+	.	Parent=Os03t0428000-02
Chr03	irgsp1_rep	CDS	17894206	17894502	.	+	0	Parent=Os03t0428000-02
Chr03	irgsp1_rep	three_prime_UTR	17894503	17895141	.	+	.	Parent=Os03t0428000-02
Chr03	irgsp1_rep	mRNA	17902702	17912534	.	-	.	ID=Os03t0428200-01;Name=Os03t0428200-01;Locus_id=Os03g0428200;Oryzabase Gene Symbol Synonym(s)=OsTPS14;Oryzabase Gene Name Synonym(s)=terpene synthase 14;Note=Similar to Terpene synthase%2C N-terminal domain containing protein%2C expressed.;Transcript_evidence=AK103908 (DDBJ%2C Best hit);ORF_evidence=Q10JA2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: lyase activity (GO:0016829);InterPro=Terpene synthase-like (IPR001906),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930);NIAS_FLcDNA=J033150O11;Oryzabase=18711;TENOR=Os03t0428200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	17912451	17912534	.	-	.	Parent=Os03t0428200-01
Chr03	irgsp1_rep	CDS	17912325	17912450	.	-	0	Parent=Os03t0428200-01
Chr03	irgsp1_rep	CDS	17905949	17906207	.	-	0	Parent=Os03t0428200-01
Chr03	irgsp1_rep	CDS	17904810	17904943	.	-	2	Parent=Os03t0428200-01
Chr03	irgsp1_rep	CDS	17904670	17904711	.	-	0	Parent=Os03t0428200-01
Chr03	irgsp1_rep	three_prime_UTR	17904568	17904669	.	-	.	Parent=Os03t0428200-01
Chr03	irgsp1_rep	three_prime_UTR	17903921	17904476	.	-	.	Parent=Os03t0428200-01
Chr03	irgsp1_rep	three_prime_UTR	17903478	17903578	.	-	.	Parent=Os03t0428200-01
Chr03	irgsp1_rep	three_prime_UTR	17902702	17903235	.	-	.	Parent=Os03t0428200-01
Chr03	irgsp1_rep	mRNA	17934776	17935787	.	+	.	ID=Os03t0428700-01;Name=Os03t0428700-01;Locus_id=Os03g0428700;CGSNL Gene Symbol=EXPA31;CGSNL Gene Name=ALPHA-EXPANSIN 31;Oryzabase Gene Symbol Synonym(s)=OsEXPA31;Oryzabase Gene Name Synonym(s)=expansin A31;Note=Similar to Expansin-A31.;Transcript_evidence=AK111273 (DDBJ%2C Best hit);ORF_evidence=Q75I75 (UniProt);GO=Biological Process: plant-type cell wall organization (GO:0009664),Cellular Component: extracellular region (GO:0005576);InterPro=Expansin (IPR002963),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);NIAS_FLcDNA=002-180-G03;Oryzabase=21718;TENOR=Os03t0428700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	17934776	17934844	.	+	.	Parent=Os03t0428700-01
Chr03	irgsp1_rep	CDS	17934845	17935615	.	+	0	Parent=Os03t0428700-01
Chr03	irgsp1_rep	three_prime_UTR	17935616	17935787	.	+	.	Parent=Os03t0428700-01
Chr03	irgsp1_rep	mRNA	17940066	17942462	.	+	.	ID=Os03t0428800-01;Name=Os03t0428800-01;Locus_id=Os03g0428800;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK060233 (DDBJ%2C Best hit);ORF_evidence=NP_001147667.1 (RefSeq);NIAS_FLcDNA=001-003-A11;Expression=AK060233;TENOR=Os03t0428800-01;KEGG=Os03t0428800-01
Chr03	irgsp1_rep	five_prime_UTR	17940066	17940067	.	+	.	Parent=Os03t0428800-01
Chr03	irgsp1_rep	CDS	17940068	17940097	.	+	0	Parent=Os03t0428800-01
Chr03	irgsp1_rep	CDS	17940328	17940480	.	+	0	Parent=Os03t0428800-01
Chr03	irgsp1_rep	CDS	17941515	17941720	.	+	0	Parent=Os03t0428800-01
Chr03	irgsp1_rep	CDS	17941960	17942167	.	+	1	Parent=Os03t0428800-01
Chr03	irgsp1_rep	three_prime_UTR	17942168	17942462	.	+	.	Parent=Os03t0428800-01
Chr03	irgsp1_rep	mRNA	17949269	17950045	.	+	.	ID=Os03t0429000-01;Name=Os03t0429000-01;Locus_id=Os03g0429000;Note=Proteinase inhibitor I25%2C cystatin domain containing protein.;Transcript_evidence=AK102768 (DDBJ%2C Best hit);ORF_evidence=Q1ENF0 (UniProt);GO=Molecular Function: cysteine-type endopeptidase inhibitor activity (GO:0004869);InterPro=Proteinase inhibitor I25%2C cystatin (IPR000010),Proteinase inhibitor I25%2C cystatin%2C conserved site (IPR018073),Proteinase inhibitor I25%2C cystatin%2C conserved region (IPR020381);NIAS_FLcDNA=J033107F20;Expression=AK102768;TENOR=Os03t0429000-01;KEGG=Os03t0429000-01
Chr03	irgsp1_rep	five_prime_UTR	17949269	17949422	.	+	.	Parent=Os03t0429000-01
Chr03	irgsp1_rep	CDS	17949423	17949794	.	+	0	Parent=Os03t0429000-01
Chr03	irgsp1_rep	three_prime_UTR	17949795	17950045	.	+	.	Parent=Os03t0429000-01
Chr03	irgsp1_rep	mRNA	17985619	17998387	.	+	.	ID=Os03t0429800-01;Name=Os03t0429800-01;Locus_id=Os03g0429800;RAP-DB Gene Symbol Synonym(s)=OsXDH;RAP-DB Gene Name Synonym(s)=xanthine dehydrogenase;CGSNL Gene Symbol=XDH1;CGSNL Gene Name=XANTHINE DEHYDROGENASE 1;Oryzabase Gene Symbol Synonym(s)=OsXDH1;Oryzabase Gene Name Synonym(s)=Xanthine dehydrogenase%2C xanthine dehydrogenase 1;Note=Xanthine dehydrogenase%2C Regulation of leaf senescence;Transcript_evidence=AK067814;ORF_evidence=Q6AUV1;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron transfer activity (GO:0009055),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: metal ion binding (GO:0046872),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: iron-sulfur cluster binding (GO:0051536),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537),Molecular Function: FAD binding (GO:0071949);InterPro=2Fe-2S ferredoxin-like superfamily (IPR036010),[2Fe-2S]-binding domain superfamily (IPR036884),FAD-binding%2C type PCMH-like superfamily (IPR036318),CO dehydrogenase flavoprotein%2C C-terminal domain superfamily (IPR036683),Aldehyde oxidase/xanthine dehydrogenase%2C a/b hammerhead superfamily (IPR036856),Aldehyde oxidase/xanthine dehydrogenase%2C molybdopterin binding domain superfamily (IPR037165),Aldehyde oxidase/xanthine dehydrogenase (IPR016208),2Fe-2S ferredoxin-type iron-sulfur binding domain (IPR001041),[2Fe-2S]-binding (IPR002888),FAD-binding domain%2C PCMH-type (IPR016166),Molybdopterin dehydrogenase%2C FAD-binding (IPR002346),CO dehydrogenase flavoprotein%2C C-terminal (IPR005107),Aldehyde oxidase/xanthine dehydrogenase%2C a/b hammerhead (IPR000674),Aldehyde oxidase/xanthine dehydrogenase%2C molybdopterin binding (IPR008274),2Fe-2S ferredoxin%2C iron-sulphur binding site (IPR006058);NIAS_FLcDNA=J013116P05;Manual Curation=March 13%2C 2020;Literature_PMID=32162142;Oryzabase=16020;Expression=AK067814;TENOR=Os03t0429800-01;KEGG=Os03t0429800-01 (EC:1.1.1.204)
Chr03	irgsp1_rep	five_prime_UTR	17985619	17985747	.	+	.	Parent=Os03t0429800-01
Chr03	irgsp1_rep	CDS	17985748	17985889	.	+	0	Parent=Os03t0429800-01
Chr03	irgsp1_rep	CDS	17987017	17987116	.	+	2	Parent=Os03t0429800-01
Chr03	irgsp1_rep	CDS	17987594	17987702	.	+	1	Parent=Os03t0429800-01
Chr03	irgsp1_rep	CDS	17988343	17989845	.	+	0	Parent=Os03t0429800-01
Chr03	irgsp1_rep	CDS	17990686	17990928	.	+	0	Parent=Os03t0429800-01
Chr03	irgsp1_rep	CDS	17991039	17991353	.	+	0	Parent=Os03t0429800-01
Chr03	irgsp1_rep	CDS	17992607	17992846	.	+	0	Parent=Os03t0429800-01
Chr03	irgsp1_rep	CDS	17993183	17993467	.	+	0	Parent=Os03t0429800-01
Chr03	irgsp1_rep	CDS	17993543	17993764	.	+	0	Parent=Os03t0429800-01
Chr03	irgsp1_rep	CDS	17994313	17994474	.	+	0	Parent=Os03t0429800-01
Chr03	irgsp1_rep	CDS	17994619	17994753	.	+	0	Parent=Os03t0429800-01
Chr03	irgsp1_rep	CDS	17996660	17996896	.	+	0	Parent=Os03t0429800-01
Chr03	irgsp1_rep	CDS	17996995	17997168	.	+	0	Parent=Os03t0429800-01
Chr03	irgsp1_rep	CDS	17997900	17998142	.	+	0	Parent=Os03t0429800-01
Chr03	irgsp1_rep	three_prime_UTR	17998143	17998387	.	+	.	Parent=Os03t0429800-01
Chr03	irgsp1_rep	mRNA	17985742	17998481	.	+	.	ID=Os03t0429800-02;Name=Os03t0429800-02;Locus_id=Os03g0429800;CGSNL Gene Symbol=XDH1;CGSNL Gene Name=XANTHINE DEHYDROGENASE 1;Oryzabase Gene Symbol Synonym(s)=OsXDH1;Oryzabase Gene Name Synonym(s)=Xanthine dehydrogenase%2C xanthine dehydrogenase 1;Note=Similar to Xanthine dehydrogenase 1 (EC 1.1.1.204).;Transcript_evidence=AK065099 (DDBJ%2C Best hit);ORF_evidence=Q10J86 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: iron ion binding (GO:0005506),Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: metal ion binding (GO:0046872),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: iron-sulfur cluster binding (GO:0051536),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=Aldehyde oxidase/xanthine dehydrogenase%2C a/b hammerhead (IPR000674),Ferredoxin (IPR001041),Molybdopterin dehydrogenase%2C FAD-binding (IPR002346),[2Fe-2S]-binding (IPR002888),CO dehydrogenase flavoprotein%2C C-terminal (IPR005107),2Fe-2S ferredoxin%2C iron-sulphur binding site (IPR006058),Aldehyde oxidase/xanthine dehydrogenase%2C molybdopterin binding (IPR008274),Beta-grasp fold%2C ferredoxin-type (IPR012675),FAD-binding%2C type 2 (IPR016166),FAD-binding%2C type 2%2C subdomain 1 (IPR016167),CO dehydrogenase flavoprotein-like%2C FAD-binding%2C subdomain 2 (IPR016169),Aldehyde oxidase/xanthine dehydrogenase (IPR016208);NIAS_FLcDNA=J013001M21;Oryzabase=16020;Expression=AK065099;TENOR=Os03t0429800-02;KEGG=Os03t0429800-02 (EC:1.1.1.204)
Chr03	irgsp1_rep	five_prime_UTR	17985742	17985747	.	+	.	Parent=Os03t0429800-02
Chr03	irgsp1_rep	CDS	17985748	17985889	.	+	0	Parent=Os03t0429800-02
Chr03	irgsp1_rep	CDS	17987017	17987116	.	+	2	Parent=Os03t0429800-02
Chr03	irgsp1_rep	CDS	17987594	17987702	.	+	1	Parent=Os03t0429800-02
Chr03	irgsp1_rep	CDS	17988343	17989845	.	+	0	Parent=Os03t0429800-02
Chr03	irgsp1_rep	CDS	17990686	17990928	.	+	0	Parent=Os03t0429800-02
Chr03	irgsp1_rep	CDS	17991039	17991353	.	+	0	Parent=Os03t0429800-02
Chr03	irgsp1_rep	CDS	17992607	17992846	.	+	0	Parent=Os03t0429800-02
Chr03	irgsp1_rep	CDS	17993183	17993467	.	+	0	Parent=Os03t0429800-02
Chr03	irgsp1_rep	CDS	17993543	17993764	.	+	0	Parent=Os03t0429800-02
Chr03	irgsp1_rep	CDS	17994313	17994474	.	+	0	Parent=Os03t0429800-02
Chr03	irgsp1_rep	CDS	17994619	17994753	.	+	0	Parent=Os03t0429800-02
Chr03	irgsp1_rep	CDS	17996660	17996896	.	+	0	Parent=Os03t0429800-02
Chr03	irgsp1_rep	CDS	17996995	17997168	.	+	0	Parent=Os03t0429800-02
Chr03	irgsp1_rep	CDS	17997900	17998142	.	+	0	Parent=Os03t0429800-02
Chr03	irgsp1_rep	three_prime_UTR	17998143	17998481	.	+	.	Parent=Os03t0429800-02
Chr03	irgsp1_rep	mRNA	17988377	17998250	.	+	.	ID=Os03t0429800-03;Name=Os03t0429800-03;Locus_id=Os03g0429800;CGSNL Gene Symbol=XDH1;CGSNL Gene Name=XANTHINE DEHYDROGENASE 1;Oryzabase Gene Symbol Synonym(s)=OsXDH1;Oryzabase Gene Name Synonym(s)=Xanthine dehydrogenase%2C xanthine dehydrogenase 1;Note=Similar to Aldehyde oxidase and xanthine dehydrogenase%2C molybdopterin binding domain containing protein%2C expressed.;Transcript_evidence=AK103000 (DDBJ%2C Best hit);ORF_evidence=Q10J86 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: iron ion binding (GO:0005506),Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: metal ion binding (GO:0046872),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Aldehyde oxidase/xanthine dehydrogenase%2C a/b hammerhead (IPR000674),Molybdopterin dehydrogenase%2C FAD-binding (IPR002346),[2Fe-2S]-binding (IPR002888),CO dehydrogenase flavoprotein%2C C-terminal (IPR005107),Aldehyde oxidase/xanthine dehydrogenase%2C molybdopterin binding (IPR008274),FAD-binding%2C type 2 (IPR016166),FAD-binding%2C type 2%2C subdomain 1 (IPR016167),CO dehydrogenase flavoprotein-like%2C FAD-binding%2C subdomain 2 (IPR016169),Aldehyde oxidase/xanthine dehydrogenase (IPR016208);NIAS_FLcDNA=J033116G02;Oryzabase=16020;Expression=AK103000;TENOR=Os03t0429800-03;KEGG=Os03t0429800-03
Chr03	irgsp1_rep	five_prime_UTR	17988377	17988378	.	+	.	Parent=Os03t0429800-03
Chr03	irgsp1_rep	CDS	17988379	17989845	.	+	0	Parent=Os03t0429800-03
Chr03	irgsp1_rep	CDS	17990686	17990928	.	+	0	Parent=Os03t0429800-03
Chr03	irgsp1_rep	CDS	17991039	17991353	.	+	0	Parent=Os03t0429800-03
Chr03	irgsp1_rep	CDS	17992607	17992846	.	+	0	Parent=Os03t0429800-03
Chr03	irgsp1_rep	CDS	17993183	17993467	.	+	0	Parent=Os03t0429800-03
Chr03	irgsp1_rep	CDS	17993543	17993764	.	+	0	Parent=Os03t0429800-03
Chr03	irgsp1_rep	CDS	17994313	17994474	.	+	0	Parent=Os03t0429800-03
Chr03	irgsp1_rep	CDS	17994619	17994753	.	+	0	Parent=Os03t0429800-03
Chr03	irgsp1_rep	CDS	17996660	17996896	.	+	0	Parent=Os03t0429800-03
Chr03	irgsp1_rep	CDS	17996995	17997168	.	+	0	Parent=Os03t0429800-03
Chr03	irgsp1_rep	CDS	17997900	17998142	.	+	0	Parent=Os03t0429800-03
Chr03	irgsp1_rep	three_prime_UTR	17998143	17998250	.	+	.	Parent=Os03t0429800-03
Chr03	irgsp1_rep	mRNA	17993181	17998326	.	+	.	ID=Os03t0429800-04;Name=Os03t0429800-04;Locus_id=Os03g0429800;CGSNL Gene Symbol=XDH1;CGSNL Gene Name=XANTHINE DEHYDROGENASE 1;Oryzabase Gene Symbol Synonym(s)=OsXDH1;Oryzabase Gene Name Synonym(s)=Xanthine dehydrogenase%2C xanthine dehydrogenase 1;Note=Similar to Aldehyde oxidase and xanthine dehydrogenase%2C molybdopterin binding domain containing protein%2C expressed.;Transcript_evidence=AK073276 (DDBJ%2C Best hit);ORF_evidence=Q10J86 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldehyde oxidase/xanthine dehydrogenase%2C molybdopterin binding (IPR008274);NIAS_FLcDNA=J033024D24;Oryzabase=16020;Expression=AK073276;TENOR=Os03t0429800-04;KEGG=Os03t0429800-04
Chr03	irgsp1_rep	five_prime_UTR	17993181	17993182	.	+	.	Parent=Os03t0429800-04
Chr03	irgsp1_rep	CDS	17993183	17993467	.	+	0	Parent=Os03t0429800-04
Chr03	irgsp1_rep	CDS	17993543	17993764	.	+	0	Parent=Os03t0429800-04
Chr03	irgsp1_rep	CDS	17994313	17994474	.	+	0	Parent=Os03t0429800-04
Chr03	irgsp1_rep	CDS	17994619	17994753	.	+	0	Parent=Os03t0429800-04
Chr03	irgsp1_rep	CDS	17996660	17996896	.	+	0	Parent=Os03t0429800-04
Chr03	irgsp1_rep	CDS	17996995	17997168	.	+	0	Parent=Os03t0429800-04
Chr03	irgsp1_rep	CDS	17997900	17998142	.	+	0	Parent=Os03t0429800-04
Chr03	irgsp1_rep	three_prime_UTR	17998143	17998326	.	+	.	Parent=Os03t0429800-04
Chr03	irgsp1_rep	mRNA	18001380	18011820	.	+	.	ID=Os03t0429900-01;Name=Os03t0429900-01;Locus_id=Os03g0429900;Note=Similar to OSIGBa0135L04.1 protein.;Transcript_evidence=AK119372 (DDBJ%2C Best hit);ORF_evidence=Q01M88 (UniProt);InterPro=Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=001-132-A02;TENOR=Os03t0429900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	18001380	18002089	.	+	.	Parent=Os03t0429900-01
Chr03	irgsp1_rep	five_prime_UTR	18002223	18002313	.	+	.	Parent=Os03t0429900-01
Chr03	irgsp1_rep	five_prime_UTR	18002427	18002578	.	+	.	Parent=Os03t0429900-01
Chr03	irgsp1_rep	five_prime_UTR	18008824	18008974	.	+	.	Parent=Os03t0429900-01
Chr03	irgsp1_rep	five_prime_UTR	18009066	18009391	.	+	.	Parent=Os03t0429900-01
Chr03	irgsp1_rep	CDS	18009392	18009513	.	+	0	Parent=Os03t0429900-01
Chr03	irgsp1_rep	CDS	18009667	18009803	.	+	1	Parent=Os03t0429900-01
Chr03	irgsp1_rep	CDS	18009888	18009966	.	+	2	Parent=Os03t0429900-01
Chr03	irgsp1_rep	CDS	18010071	18010191	.	+	1	Parent=Os03t0429900-01
Chr03	irgsp1_rep	CDS	18010286	18010360	.	+	0	Parent=Os03t0429900-01
Chr03	irgsp1_rep	three_prime_UTR	18010361	18010440	.	+	.	Parent=Os03t0429900-01
Chr03	irgsp1_rep	three_prime_UTR	18010527	18011079	.	+	.	Parent=Os03t0429900-01
Chr03	irgsp1_rep	three_prime_UTR	18011163	18011246	.	+	.	Parent=Os03t0429900-01
Chr03	irgsp1_rep	three_prime_UTR	18011311	18011390	.	+	.	Parent=Os03t0429900-01
Chr03	irgsp1_rep	three_prime_UTR	18011469	18011549	.	+	.	Parent=Os03t0429900-01
Chr03	irgsp1_rep	three_prime_UTR	18011624	18011820	.	+	.	Parent=Os03t0429900-01
Chr03	irgsp1_rep	mRNA	18016144	18020657	.	+	.	ID=Os03t0430000-01;Name=Os03t0430000-01;Locus_id=Os03g0430000;Note=Twin arginine translocation signal%2C Tat domain containing protein.;Transcript_evidence=AK068917 (DDBJ%2C Best hit);ORF_evidence=NP_001150861.1 (RefSeq);InterPro=Twin-arginine translocation pathway%2C signal sequence (IPR006311),Domain of unknown function DUF2215 (IPR024233);NIAS_FLcDNA=J023002L14;Expression=AK068917;TENOR=Os03t0430000-01;KEGG=Os03t0430000-01
Chr03	irgsp1_rep	five_prime_UTR	18016144	18016256	.	+	.	Parent=Os03t0430000-01
Chr03	irgsp1_rep	CDS	18016257	18016359	.	+	0	Parent=Os03t0430000-01
Chr03	irgsp1_rep	CDS	18016438	18016651	.	+	2	Parent=Os03t0430000-01
Chr03	irgsp1_rep	CDS	18016748	18016908	.	+	1	Parent=Os03t0430000-01
Chr03	irgsp1_rep	CDS	18017019	18017164	.	+	2	Parent=Os03t0430000-01
Chr03	irgsp1_rep	CDS	18018256	18018318	.	+	0	Parent=Os03t0430000-01
Chr03	irgsp1_rep	CDS	18018407	18018499	.	+	0	Parent=Os03t0430000-01
Chr03	irgsp1_rep	CDS	18018944	18019105	.	+	0	Parent=Os03t0430000-01
Chr03	irgsp1_rep	CDS	18019206	18019312	.	+	0	Parent=Os03t0430000-01
Chr03	irgsp1_rep	CDS	18019923	18020059	.	+	1	Parent=Os03t0430000-01
Chr03	irgsp1_rep	CDS	18020148	18020416	.	+	2	Parent=Os03t0430000-01
Chr03	irgsp1_rep	three_prime_UTR	18020417	18020657	.	+	.	Parent=Os03t0430000-01
Chr03	irgsp1_rep	mRNA	18039103	18041599	.	+	.	ID=Os03t0430400-01;Name=Os03t0430400-01;Locus_id=Os03g0430400;CGSNL Gene Symbol=JMJ715;CGSNL Gene Name=JUMONJI 715;Oryzabase Gene Symbol Synonym(s)=OsJMJ715;Oryzabase Gene Name Synonym(s)=Jumonji 715;Note=Similar to JmjC domain containing protein%2C expressed.;Transcript_evidence=AK059145 (DDBJ%2C Best hit);ORF_evidence=Q10J83 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Transcription factor jumonji/aspartyl beta-hydroxylase (IPR003347),Transcription factor jumonji (IPR013129),RmlC-like jelly roll fold (IPR014710);NIAS_FLcDNA=001-023-A12;Oryzabase=15213;TENOR=Os03t0430400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	18039103	18039104	.	+	.	Parent=Os03t0430400-01
Chr03	irgsp1_rep	CDS	18039105	18039437	.	+	0	Parent=Os03t0430400-01
Chr03	irgsp1_rep	CDS	18039635	18039842	.	+	0	Parent=Os03t0430400-01
Chr03	irgsp1_rep	CDS	18039941	18040287	.	+	2	Parent=Os03t0430400-01
Chr03	irgsp1_rep	CDS	18040376	18040448	.	+	0	Parent=Os03t0430400-01
Chr03	irgsp1_rep	CDS	18040551	18040636	.	+	2	Parent=Os03t0430400-01
Chr03	irgsp1_rep	CDS	18040805	18040924	.	+	0	Parent=Os03t0430400-01
Chr03	irgsp1_rep	CDS	18041023	18041087	.	+	0	Parent=Os03t0430400-01
Chr03	irgsp1_rep	CDS	18041182	18041332	.	+	1	Parent=Os03t0430400-01
Chr03	irgsp1_rep	three_prime_UTR	18041333	18041599	.	+	.	Parent=Os03t0430400-01
Chr03	irgsp1_rep	mRNA	18053010	18059557	.	+	.	ID=Os03t0430500-00;Name=Os03t0430500-00;Locus_id=Os03g0430500;Oryzabase Gene Symbol Synonym(s)=OsSub29%2C SUB29;Oryzabase Gene Name Synonym(s)=Subtilisin 29%2C SUBTILISIN 29;Note=Peptidase S8/S53%2C subtilisin/kexin/sedolisin domain containing protein.;Transcript_evidence=AK360024 (DDBJ);ORF_evidence=NP_001050424.2 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C  Asp-active site (IPR023827),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);Oryzabase=20116;TENOR=Os03t0430500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	18053010	18055253	.	+	0	Parent=Os03t0430500-00
Chr03	irgsp1_rep	CDS	18059072	18059557	.	+	0	Parent=Os03t0430500-00
Chr03	irgsp1_rep	mRNA	18053185	18055328	.	-	.	ID=Os03t0430575-00;Name=Os03t0430575-00;Locus_id=Os03g0430575;Note=Hypothetical protein.;Transcript_evidence=EU955468 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0430575-00
Chr03	irgsp1_rep	five_prime_UTR	18054917	18055328	.	-	.	Parent=Os03t0430575-00
Chr03	irgsp1_rep	CDS	18054377	18054916	.	-	0	Parent=Os03t0430575-00
Chr03	irgsp1_rep	three_prime_UTR	18053185	18054376	.	-	.	Parent=Os03t0430575-00
Chr03	irgsp1_rep	mRNA	18085702	18087288	.	+	.	ID=Os03t0431100-01;Name=Os03t0431100-01;Locus_id=Os03g0431100;Note=Conserved hypothetical protein.;Transcript_evidence=AK058643 (DDBJ%2C Best hit);ORF_evidence=NP_001060124.1 (RefSeq);NIAS_FLcDNA=001-018-E06;TENOR=Os03t0431100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	18085702	18085703	.	+	.	Parent=Os03t0431100-01
Chr03	irgsp1_rep	CDS	18085704	18085792	.	+	0	Parent=Os03t0431100-01
Chr03	irgsp1_rep	CDS	18085879	18086080	.	+	1	Parent=Os03t0431100-01
Chr03	irgsp1_rep	CDS	18086917	18087039	.	+	0	Parent=Os03t0431100-01
Chr03	irgsp1_rep	three_prime_UTR	18087040	18087288	.	+	.	Parent=Os03t0431100-01
Chr03	irgsp1_rep	mRNA	18087593	18095041	.	-	.	ID=Os03t0431200-00;Name=Os03t0431200-00;Locus_id=Os03g0431200;Note=Similar to N-acetyl-glutamate synthase.;Transcript_evidence=ab initio prediction;ORF_evidence=C4NFG1 (UniProt);GO=Biological Process: arginine biosynthetic process (GO:0006526),Biological Process: metabolic process (GO:0008152),Biological Process: cellular amino acid biosynthetic process (GO:0008652),Cellular Component: cytoplasm (GO:0005737),Molecular Function: acetyl-CoA:L-glutamate N-acetyltransferase activity (GO:0004042),Molecular Function: N-acetyltransferase activity (GO:0008080);InterPro=GCN5-related N-acetyltransferase (GNAT) domain (IPR000182),Aspartate/glutamate/uridylate kinase (IPR001048),Amino-acid N-acetyltransferase (ArgA) (IPR010167),Acyl-CoA N-acyltransferase (IPR016181);TENOR=Os03t0431200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	18094988	18095041	.	-	0	Parent=Os03t0431200-00
Chr03	irgsp1_rep	CDS	18092208	18092295	.	-	0	Parent=Os03t0431200-00
Chr03	irgsp1_rep	CDS	18091122	18091330	.	-	2	Parent=Os03t0431200-00
Chr03	irgsp1_rep	CDS	18090606	18090757	.	-	0	Parent=Os03t0431200-00
Chr03	irgsp1_rep	CDS	18089997	18090417	.	-	1	Parent=Os03t0431200-00
Chr03	irgsp1_rep	CDS	18089449	18089546	.	-	0	Parent=Os03t0431200-00
Chr03	irgsp1_rep	CDS	18088932	18089043	.	-	1	Parent=Os03t0431200-00
Chr03	irgsp1_rep	CDS	18088661	18088820	.	-	0	Parent=Os03t0431200-00
Chr03	irgsp1_rep	CDS	18088024	18088096	.	-	2	Parent=Os03t0431200-00
Chr03	irgsp1_rep	CDS	18087593	18087749	.	-	1	Parent=Os03t0431200-00
Chr03	irgsp1_rep	mRNA	18110451	18112570	.	-	.	ID=Os03t0431500-01;Name=Os03t0431500-01;Locus_id=Os03g0431500;Note=Conserved hypothetical protein.;Transcript_evidence=AK110714 (DDBJ%2C Best hit);ORF_evidence=Q75KQ8 (UniProt);NIAS_FLcDNA=002-170-D04;Expression=AK110714;TENOR=Os03t0431500-01;KEGG=Os03t0431500-01
Chr03	irgsp1_rep	five_prime_UTR	18112570	18112570	.	-	.	Parent=Os03t0431500-01
Chr03	irgsp1_rep	CDS	18112227	18112569	.	-	0	Parent=Os03t0431500-01
Chr03	irgsp1_rep	CDS	18111776	18111789	.	-	2	Parent=Os03t0431500-01
Chr03	irgsp1_rep	three_prime_UTR	18111740	18111775	.	-	.	Parent=Os03t0431500-01
Chr03	irgsp1_rep	three_prime_UTR	18111437	18111525	.	-	.	Parent=Os03t0431500-01
Chr03	irgsp1_rep	three_prime_UTR	18110997	18111346	.	-	.	Parent=Os03t0431500-01
Chr03	irgsp1_rep	three_prime_UTR	18110451	18110902	.	-	.	Parent=Os03t0431500-01
Chr03	irgsp1_rep	mRNA	18112904	18116812	.	+	.	ID=Os03t0431550-01;Name=Os03t0431550-01;Locus_id=Os03g0431550;Note=Glycosyl transferase%2C family 20 domain containing protein.;Transcript_evidence=AK241760 (DDBJ%2C Best hit);ORF_evidence=NP_001173483.1 (RefSeq);GO=Biological Process: trehalose biosynthetic process (GO:0005992),Molecular Function: catalytic activity (GO:0003824);InterPro=Glycosyl transferase%2C family 20 (IPR001830);NIAS_FLcDNA=J065204N07;TENOR=Os03t0431550-01;KEGG=Os03t0431550-01
Chr03	irgsp1_rep	five_prime_UTR	18112904	18113120	.	+	.	Parent=Os03t0431550-01
Chr03	irgsp1_rep	five_prime_UTR	18114057	18114139	.	+	.	Parent=Os03t0431550-01
Chr03	irgsp1_rep	five_prime_UTR	18115719	18116522	.	+	.	Parent=Os03t0431550-01
Chr03	irgsp1_rep	CDS	18116523	18116747	.	+	0	Parent=Os03t0431550-01
Chr03	irgsp1_rep	three_prime_UTR	18116748	18116812	.	+	.	Parent=Os03t0431550-01
Chr03	irgsp1_rep	mRNA	18119653	18121181	.	+	.	ID=Os03t0431600-00;Name=Os03t0431600-00;Locus_id=Os03g0431600;Note=Hypothetical conserved gene.;Transcript_evidence=AK240972 (DDBJ%2C Secondary hit);ORF_evidence=NP_001173484.1 (RefSeq);TENOR=Os03t0431600-00;KEGG=Os03t0431600-00
Chr03	irgsp1_rep	five_prime_UTR	18119653	18120929	.	+	.	Parent=Os03t0431600-00
Chr03	irgsp1_rep	CDS	18120930	18121109	.	+	0	Parent=Os03t0431600-00
Chr03	irgsp1_rep	three_prime_UTR	18121110	18121181	.	+	.	Parent=Os03t0431600-00
Chr03	irgsp1_rep	mRNA	18129996	18142854	.	+	.	ID=Os03t0431800-00;Name=Os03t0431800-00;Locus_id=Os03g0431800;Note=Conserved hypothetical protein.;Transcript_evidence=AK363472 (DDBJ);ORF_evidence=Q75KQ9 (UniProt);TENOR=Os03t0431800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	18129996	18130119	.	+	0	Parent=Os03t0431800-00
Chr03	irgsp1_rep	CDS	18132943	18133039	.	+	2	Parent=Os03t0431800-00
Chr03	irgsp1_rep	CDS	18133127	18133235	.	+	1	Parent=Os03t0431800-00
Chr03	irgsp1_rep	CDS	18133333	18133371	.	+	0	Parent=Os03t0431800-00
Chr03	irgsp1_rep	CDS	18133893	18133976	.	+	0	Parent=Os03t0431800-00
Chr03	irgsp1_rep	CDS	18134094	18134155	.	+	0	Parent=Os03t0431800-00
Chr03	irgsp1_rep	CDS	18134899	18135001	.	+	1	Parent=Os03t0431800-00
Chr03	irgsp1_rep	CDS	18136319	18136468	.	+	0	Parent=Os03t0431800-00
Chr03	irgsp1_rep	CDS	18136901	18136969	.	+	0	Parent=Os03t0431800-00
Chr03	irgsp1_rep	CDS	18137048	18137104	.	+	0	Parent=Os03t0431800-00
Chr03	irgsp1_rep	CDS	18137174	18137434	.	+	0	Parent=Os03t0431800-00
Chr03	irgsp1_rep	CDS	18140362	18140430	.	+	0	Parent=Os03t0431800-00
Chr03	irgsp1_rep	CDS	18140582	18140683	.	+	0	Parent=Os03t0431800-00
Chr03	irgsp1_rep	CDS	18141408	18141469	.	+	0	Parent=Os03t0431800-00
Chr03	irgsp1_rep	CDS	18141583	18141786	.	+	1	Parent=Os03t0431800-00
Chr03	irgsp1_rep	CDS	18142056	18142149	.	+	1	Parent=Os03t0431800-00
Chr03	irgsp1_rep	CDS	18142558	18142854	.	+	0	Parent=Os03t0431800-00
Chr03	irgsp1_rep	mRNA	18148051	18148793	.	+	.	ID=Os03t0432000-00;Name=Os03t0432000-00;Locus_id=Os03g0432000;Note=Hypothetical conserved gene.;Transcript_evidence=FP093392 (DDBJ);ORF_evidence=Q75KR0 (UniProt);TENOR=Os03t0432000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	18148051	18148055	.	+	.	Parent=Os03t0432000-00
Chr03	irgsp1_rep	CDS	18148056	18148793	.	+	0	Parent=Os03t0432000-00
Chr03	irgsp1_rep	mRNA	18153151	18160127	.	-	.	ID=Os03t0432100-01;Name=Os03t0432100-01;Locus_id=Os03g0432100;Oryzabase Gene Symbol Synonym(s)=osppdka%2C ppdka;Oryzabase Gene Name Synonym(s)=Pyruvate orthophosphate dikinase%2C cytosolic Pyruvate orthophosphate dikinase%2C cytosolic PPDK;Note=Similar to Pyruvate%2C phosphate dikinase 2.;Transcript_evidence=AK065739 (DDBJ%2C Best hit);ORF_evidence=Q75KR1 (UniProt);NIAS_FLcDNA=J013039L05;Oryzabase=15729;TENOR=Os03t0432100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	18160037	18160127	.	-	.	Parent=Os03t0432100-01
Chr03	irgsp1_rep	CDS	18159932	18160036	.	-	0	Parent=Os03t0432100-01
Chr03	irgsp1_rep	CDS	18159468	18159684	.	-	0	Parent=Os03t0432100-01
Chr03	irgsp1_rep	CDS	18158575	18158603	.	-	2	Parent=Os03t0432100-01
Chr03	irgsp1_rep	three_prime_UTR	18158441	18158574	.	-	.	Parent=Os03t0432100-01
Chr03	irgsp1_rep	three_prime_UTR	18158086	18158321	.	-	.	Parent=Os03t0432100-01
Chr03	irgsp1_rep	three_prime_UTR	18157613	18157741	.	-	.	Parent=Os03t0432100-01
Chr03	irgsp1_rep	three_prime_UTR	18157035	18157214	.	-	.	Parent=Os03t0432100-01
Chr03	irgsp1_rep	three_prime_UTR	18156458	18156595	.	-	.	Parent=Os03t0432100-01
Chr03	irgsp1_rep	three_prime_UTR	18156174	18156338	.	-	.	Parent=Os03t0432100-01
Chr03	irgsp1_rep	three_prime_UTR	18155841	18156002	.	-	.	Parent=Os03t0432100-01
Chr03	irgsp1_rep	three_prime_UTR	18155607	18155696	.	-	.	Parent=Os03t0432100-01
Chr03	irgsp1_rep	three_prime_UTR	18155385	18155523	.	-	.	Parent=Os03t0432100-01
Chr03	irgsp1_rep	three_prime_UTR	18155005	18155182	.	-	.	Parent=Os03t0432100-01
Chr03	irgsp1_rep	three_prime_UTR	18154764	18154893	.	-	.	Parent=Os03t0432100-01
Chr03	irgsp1_rep	three_prime_UTR	18154382	18154510	.	-	.	Parent=Os03t0432100-01
Chr03	irgsp1_rep	three_prime_UTR	18154146	18154283	.	-	.	Parent=Os03t0432100-01
Chr03	irgsp1_rep	three_prime_UTR	18153890	18153967	.	-	.	Parent=Os03t0432100-01
Chr03	irgsp1_rep	three_prime_UTR	18153649	18153740	.	-	.	Parent=Os03t0432100-01
Chr03	irgsp1_rep	three_prime_UTR	18153151	18153512	.	-	.	Parent=Os03t0432100-01
Chr03	irgsp1_rep	mRNA	18167258	18171301	.	-	.	ID=Os03t0432200-00;Name=Os03t0432200-00;Locus_id=Os03g0432200;Note=Similar to predicted protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10QE3 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Hly-III-related (IPR004254);TENOR=Os03t0432200-00;KEGG=Os03t0432200-00
Chr03	irgsp1_rep	CDS	18171075	18171301	.	-	0	Parent=Os03t0432200-00
Chr03	irgsp1_rep	CDS	18170641	18170694	.	-	1	Parent=Os03t0432200-00
Chr03	irgsp1_rep	CDS	18167258	18167456	.	-	1	Parent=Os03t0432200-00
Chr03	irgsp1_rep	mRNA	18176979	18177440	.	-	.	ID=Os03t0432277-00;Name=Os03t0432277-00;Locus_id=Os03g0432277;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os03t0432277-00
Chr03	irgsp1_rep	CDS	18176979	18177440	.	-	0	Parent=Os03t0432277-00
Chr03	irgsp1_rep	mRNA	18204733	18205753	.	+	.	ID=Os03t0432666-00;Name=Os03t0432666-00;Locus_id=Os03g0432666;Note=Hypothetical gene.;Transcript_evidence=CT835184 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os03t0432666-00;KEGG=Os03t0432666-00
Chr03	irgsp1_rep	five_prime_UTR	18204733	18204733	.	+	.	Parent=Os03t0432666-00
Chr03	irgsp1_rep	CDS	18204734	18205003	.	+	0	Parent=Os03t0432666-00
Chr03	irgsp1_rep	three_prime_UTR	18205004	18205753	.	+	.	Parent=Os03t0432666-00
Chr03	irgsp1_rep	mRNA	18213386	18214915	.	+	.	ID=Os03t0432900-01;Name=Os03t0432900-01;Locus_id=Os03g0432900;Note=Conserved hypothetical protein.;Transcript_evidence=AK242451 (DDBJ%2C Best hit);ORF_evidence=NP_001050432.2 (RefSeq);NIAS_FLcDNA=J080096G08;TENOR=Os03t0432900-01;KEGG=Os03t0432900-01
Chr03	irgsp1_rep	five_prime_UTR	18213386	18213947	.	+	.	Parent=Os03t0432900-01
Chr03	irgsp1_rep	CDS	18213948	18214709	.	+	0	Parent=Os03t0432900-01
Chr03	irgsp1_rep	three_prime_UTR	18214710	18214915	.	+	.	Parent=Os03t0432900-01
Chr03	irgsp1_rep	mRNA	18238256	18240730	.	-	.	ID=Os03t0433200-01;Name=Os03t0433200-01;Locus_id=Os03g0433200;RAP-DB Gene Symbol Synonym(s)=OsSHR2;RAP-DB Gene Name Synonym(s)=SHORTROOT2;CGSNL Gene Symbol=SHR2;CGSNL Gene Name=SHORT ROOT GENE 2;Oryzabase Gene Symbol Synonym(s)=OsSHR2%2C OsGRAS-15%2C OsGRAS15%2C GRAS-15%2C GRAS15;Oryzabase Gene Name Synonym(s)=rice SHORT  ROOT gene2%2C SHORT-ROOT 2%2C SHORTROOT2%2C SHORT-ROOT protein 2%2C GRAS protein 15;Note=SHR transcription factor%2C Regulation of the number of cortex cell layers in the root%2C Coordination of stomatal patterning;Transcript_evidence=Inferred from literature;ORF_evidence=Q75I13;InterPro=Transcription factor GRAS (IPR005202);Manual Curation=February 20%2C 2018;Literature_PMID=29127261,25352666,17446396;Oryzabase=18668;TENOR=Os03t0433200-00;Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737) [stele cell]
Chr03	irgsp1_rep	five_prime_UTR	18240536	18240730	.	-	.	Parent=Os03t0433200-01
Chr03	irgsp1_rep	CDS	18238724	18240535	.	-	0	Parent=Os03t0433200-01
Chr03	irgsp1_rep	three_prime_UTR	18238256	18238723	.	-	.	Parent=Os03t0433200-01
Chr03	irgsp1_rep	mRNA	18278977	18281110	.	-	.	ID=Os03t0433733-00;Name=Os03t0433733-00;Locus_id=Os03g0433733;Note=Similar to OO_Ba0005L10-OO_Ba0081K17.16 protein.;Transcript_evidence=CT835127 (DDBJ%2C Best hit);ORF_evidence=D0ABC0 (UniProt);TENOR=Os03t0433733-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	18281059	18281110	.	-	.	Parent=Os03t0433733-00
Chr03	irgsp1_rep	CDS	18280933	18281058	.	-	0	Parent=Os03t0433733-00
Chr03	irgsp1_rep	CDS	18279278	18279700	.	-	0	Parent=Os03t0433733-00
Chr03	irgsp1_rep	three_prime_UTR	18278977	18279277	.	-	.	Parent=Os03t0433733-00
Chr03	irgsp1_rep	mRNA	18320727	18322755	.	+	.	ID=Os03t0434400-00;Name=Os03t0434400-00;Locus_id=Os03g0434400;Note=Similar to Phenazine biosynthesis-like protein%2C expressed.;Transcript_evidence=AK252135 (DDBJ);ORF_evidence=Q10J41 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824);InterPro=Phenazine biosynthesis PhzC/PhzF protein (IPR003719);TENOR=Os03t0434400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	18320727	18320807	.	+	.	Parent=Os03t0434400-00
Chr03	irgsp1_rep	CDS	18320808	18320837	.	+	0	Parent=Os03t0434400-00
Chr03	irgsp1_rep	CDS	18320930	18321136	.	+	0	Parent=Os03t0434400-00
Chr03	irgsp1_rep	CDS	18321334	18321651	.	+	0	Parent=Os03t0434400-00
Chr03	irgsp1_rep	CDS	18321935	18322096	.	+	0	Parent=Os03t0434400-00
Chr03	irgsp1_rep	CDS	18322449	18322532	.	+	0	Parent=Os03t0434400-00
Chr03	irgsp1_rep	CDS	18322648	18322755	.	+	0	Parent=Os03t0434400-00
Chr03	irgsp1_rep	mRNA	18325248	18332522	.	-	.	ID=Os03t0434800-00;Name=Os03t0434800-00;Locus_id=Os03g0434800;Oryzabase Gene Symbol Synonym(s)=PRX2%2C OsPRX2;Oryzabase Gene Name Synonym(s)=Peroxidase 2;Note=Similar to Peroxidase 2.;Transcript_evidence=CT835109 (DDBJ%2C Best hit);ORF_evidence=B6TU39 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);Oryzabase=22575;TENOR=Os03t0434800-00;KEGG=Os03t0434800-00 (EC:1.11.1.7)
Chr03	irgsp1_rep	five_prime_UTR	18332470	18332522	.	-	.	Parent=Os03t0434800-00
Chr03	irgsp1_rep	CDS	18332211	18332469	.	-	0	Parent=Os03t0434800-00
Chr03	irgsp1_rep	CDS	18331919	18332109	.	-	2	Parent=Os03t0434800-00
Chr03	irgsp1_rep	CDS	18331346	18331511	.	-	0	Parent=Os03t0434800-00
Chr03	irgsp1_rep	CDS	18325446	18325837	.	-	2	Parent=Os03t0434800-00
Chr03	irgsp1_rep	three_prime_UTR	18325248	18325445	.	-	.	Parent=Os03t0434800-00
Chr03	irgsp1_rep	mRNA	18355628	18365524	.	+	.	ID=Os03t0435200-01;Name=Os03t0435200-01;Locus_id=Os03g0435200;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK120095 (DDBJ%2C Best hit);ORF_evidence=A2XIB7 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013022A13;Expression=AK120095;TENOR=Os03t0435200-01;KEGG=Os03t0435200-01
Chr03	irgsp1_rep	five_prime_UTR	18355628	18355903	.	+	.	Parent=Os03t0435200-01
Chr03	irgsp1_rep	CDS	18355904	18357859	.	+	0	Parent=Os03t0435200-01
Chr03	irgsp1_rep	three_prime_UTR	18357860	18357860	.	+	.	Parent=Os03t0435200-01
Chr03	irgsp1_rep	three_prime_UTR	18359336	18359407	.	+	.	Parent=Os03t0435200-01
Chr03	irgsp1_rep	three_prime_UTR	18359543	18359590	.	+	.	Parent=Os03t0435200-01
Chr03	irgsp1_rep	three_prime_UTR	18359677	18359788	.	+	.	Parent=Os03t0435200-01
Chr03	irgsp1_rep	three_prime_UTR	18360946	18361203	.	+	.	Parent=Os03t0435200-01
Chr03	irgsp1_rep	three_prime_UTR	18363813	18363990	.	+	.	Parent=Os03t0435200-01
Chr03	irgsp1_rep	three_prime_UTR	18364494	18364604	.	+	.	Parent=Os03t0435200-01
Chr03	irgsp1_rep	three_prime_UTR	18364938	18365524	.	+	.	Parent=Os03t0435200-01
Chr03	irgsp1_rep	mRNA	18367213	18369983	.	+	.	ID=Os03t0435300-00;Name=Os03t0435300-00;Locus_id=Os03g0435300;Note=Similar to exodeoxyribonuclease V.;Transcript_evidence=EU972806 (DDBJ);ORF_evidence=NP_001148265.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);TENOR=Os03t0435300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	18367213	18368073	.	+	0	Parent=Os03t0435300-00
Chr03	irgsp1_rep	CDS	18369645	18369983	.	+	0	Parent=Os03t0435300-00
Chr03	irgsp1_rep	mRNA	18377199	18377334	.	-	.	ID=Os03t0435550-00;Name=Os03t0435550-00;Locus_id=Os03g0435550;Note=Similar to chlorophyll a-b binding protein M9%2C chloroplastic precursor.;Transcript_evidence=AJ234427 (DDBJ);ORF_evidence=NP_001105545.1 (RefSeq);TENOR=Os03t0435550-00
Chr03	irgsp1_rep	CDS	18377245	18377334	.	-	0	Parent=Os03t0435550-00
Chr03	irgsp1_rep	three_prime_UTR	18377199	18377244	.	-	.	Parent=Os03t0435550-00
Chr03	irgsp1_rep	mRNA	18388075	18388521	.	-	.	ID=Os03t0435800-00;Name=Os03t0435800-00;Locus_id=Os03g0435800;Note=Hypothetical conserved gene.;Transcript_evidence=FP093303 (DDBJ);ORF_evidence=A9NKD9 (UniProt);InterPro=Protein of unknown function DUF3743 (IPR022214);TENOR=Os03t0435800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	18388471	18388521	.	-	.	Parent=Os03t0435800-00
Chr03	irgsp1_rep	CDS	18388075	18388470	.	-	0	Parent=Os03t0435800-00
Chr03	irgsp1_rep	mRNA	18390335	18392238	.	-	.	ID=Os03t0435900-01;Name=Os03t0435900-01;Locus_id=Os03g0435900;Note=Peptidase S8 and S53%2C subtilisin%2C kexin%2C sedolisin domain containing protein.;Transcript_evidence=AK107787 (DDBJ%2C Best hit);ORF_evidence=A9NKD9 (UniProt);InterPro=Protein of unknown function DUF3743 (IPR022214);NIAS_FLcDNA=002-133-D01;Expression=AK107787;TENOR=Os03t0435900-01;KEGG=Os03t0435900-01
Chr03	irgsp1_rep	five_prime_UTR	18392133	18392238	.	-	.	Parent=Os03t0435900-01
Chr03	irgsp1_rep	CDS	18391833	18392132	.	-	0	Parent=Os03t0435900-01
Chr03	irgsp1_rep	three_prime_UTR	18391832	18391832	.	-	.	Parent=Os03t0435900-01
Chr03	irgsp1_rep	three_prime_UTR	18390335	18390598	.	-	.	Parent=Os03t0435900-01
Chr03	irgsp1_rep	mRNA	18394112	18394733	.	-	.	ID=Os03t0436100-01;Name=Os03t0436100-01;Locus_id=Os03g0436100;Note=Hypothetical gene.;Transcript_evidence=AK101901 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033071C01;Expression=AK101901;TENOR=Os03t0436100-01;KEGG=Os03t0436100-01
Chr03	irgsp1_rep	CDS	18394323	18394733	.	-	0	Parent=Os03t0436100-01
Chr03	irgsp1_rep	three_prime_UTR	18394112	18394322	.	-	.	Parent=Os03t0436100-01
Chr03	irgsp1_rep	mRNA	18396945	18401547	.	+	.	ID=Os03t0436300-00;Name=Os03t0436300-00;Locus_id=Os03g0436300;Note=Similar to calmodulin binding protein.;Transcript_evidence=AK372659 (DDBJ);ORF_evidence=NP_001151502.1 (RefSeq);InterPro=Calmodulin binding protein-like (IPR012416);TENOR=Os03t0436300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	18396945	18397264	.	+	0	Parent=Os03t0436300-00
Chr03	irgsp1_rep	CDS	18397374	18397449	.	+	1	Parent=Os03t0436300-00
Chr03	irgsp1_rep	CDS	18397949	18398001	.	+	0	Parent=Os03t0436300-00
Chr03	irgsp1_rep	CDS	18398123	18398613	.	+	1	Parent=Os03t0436300-00
Chr03	irgsp1_rep	CDS	18398891	18399051	.	+	2	Parent=Os03t0436300-00
Chr03	irgsp1_rep	CDS	18400433	18400633	.	+	0	Parent=Os03t0436300-00
Chr03	irgsp1_rep	CDS	18400748	18401335	.	+	0	Parent=Os03t0436300-00
Chr03	irgsp1_rep	three_prime_UTR	18401336	18401547	.	+	.	Parent=Os03t0436300-00
Chr03	irgsp1_rep	mRNA	18405282	18406843	.	-	.	ID=Os03t0436400-01;Name=Os03t0436400-01;Locus_id=Os03g0436400;Note=Similar to A.thaliana gene induced upon wounding stress.;Transcript_evidence=AK106105 (DDBJ%2C Best hit);ORF_evidence=D6NIX1 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-207-C11;TENOR=Os03t0436400-01
Chr03	irgsp1_rep	five_prime_UTR	18406654	18406843	.	-	.	Parent=Os03t0436400-01
Chr03	irgsp1_rep	CDS	18405463	18406653	.	-	0	Parent=Os03t0436400-01
Chr03	irgsp1_rep	three_prime_UTR	18405282	18405462	.	-	.	Parent=Os03t0436400-01
Chr03	irgsp1_rep	mRNA	18405396	18406804	.	-	.	ID=Os03t0436400-02;Name=Os03t0436400-02;Locus_id=Os03g0436400;Note=Similar to A.thaliana gene induced upon wounding stress.;Transcript_evidence=AK065159 (DDBJ%2C Best hit);ORF_evidence=D6NIX1 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013002B24;Expression=AK065159;TENOR=Os03t0436400-02;KEGG=Os03t0436400-02
Chr03	irgsp1_rep	five_prime_UTR	18406654	18406804	.	-	.	Parent=Os03t0436400-02
Chr03	irgsp1_rep	CDS	18405463	18406653	.	-	0	Parent=Os03t0436400-02
Chr03	irgsp1_rep	three_prime_UTR	18405396	18405462	.	-	.	Parent=Os03t0436400-02
Chr03	irgsp1_rep	mRNA	18405282	18406742	.	-	.	ID=Os03t0436400-03;Name=Os03t0436400-03;Locus_id=Os03g0436400;Note=Similar to A.thaliana gene induced upon wounding stress.;Transcript_evidence=AK060848 (DDBJ%2C Best hit);ORF_evidence=D6NIX1 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-034-E05;TENOR=Os03t0436400-03
Chr03	irgsp1_rep	five_prime_UTR	18406654	18406742	.	-	.	Parent=Os03t0436400-03
Chr03	irgsp1_rep	CDS	18405463	18406653	.	-	0	Parent=Os03t0436400-03
Chr03	irgsp1_rep	three_prime_UTR	18405282	18405462	.	-	.	Parent=Os03t0436400-03
Chr03	irgsp1_rep	mRNA	18408674	18410732	.	-	.	ID=Os03t0436500-01;Name=Os03t0436500-01;Locus_id=Os03g0436500;Note=Zinc finger%2C BED-type predicted domain containing protein.;Transcript_evidence=AK070610 (DDBJ%2C Best hit);ORF_evidence=longestORF;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Zinc finger%2C BED-type predicted (IPR003656);NIAS_FLcDNA=J023061G14;TENOR=Os03t0436500-01
Chr03	irgsp1_rep	five_prime_UTR	18409283	18410732	.	-	.	Parent=Os03t0436500-01
Chr03	irgsp1_rep	five_prime_UTR	18409141	18409196	.	-	.	Parent=Os03t0436500-01
Chr03	irgsp1_rep	CDS	18408674	18409140	.	-	0	Parent=Os03t0436500-01
Chr03	irgsp1_rep	mRNA	18410063	18411482	.	+	.	ID=Os03t0436600-00;Name=Os03t0436600-00;Locus_id=Os03g0436600;Note=Similar to polygalacturonase inhibitor 1.;Transcript_evidence=AK365651 (DDBJ);ORF_evidence=NP_001151303.1 (RefSeq);InterPro=Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);TENOR=Os03t0436600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	18410063	18410612	.	+	0	Parent=Os03t0436600-00
Chr03	irgsp1_rep	CDS	18411043	18411482	.	+	2	Parent=Os03t0436600-00
Chr03	irgsp1_rep	mRNA	18430425	18431229	.	-	.	ID=Os03t0437100-01;Name=Os03t0437100-01;Locus_id=Os03g0437100;RAP-DB Gene Symbol Synonym(s)=OsDRZ1;RAP-DB Gene Name Synonym(s)=Oryza sativa drought responsive zinc finger protein 1;CGSNL Gene Symbol=DRZ1;CGSNL Gene Name=DROUGHT RESPONSIVE ZINC FINGER PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsDRZ1%2C DLN90%2C OsDLN90;Oryzabase Gene Name Synonym(s)=drought responsive zinc finger protein 1%2C DLN repressor 90%2C DLN motif protein 90;Note=C2H2 zinc finger protein%2C Transcriptional repressor%2C Drought tolerance%2C Positive regulation of plant growth and productivity;Transcript_evidence=AK108997;ORF_evidence=Q75KE6;GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Zinc finger C2H2 superfamily (IPR036236),Zinc finger C2H2-type (IPR013087);NIAS_FLcDNA=002-153-G07;Manual Curation=September 4%2C 2018;Literature_PMID=30020522;Oryzabase=22598;Expression=AK108997;TENOR=Os03t0437100-01;KEGG=Os03t0437100-01;Subcellular location=nucleus (GO:0005634) [mainly], cytoplasm (GO:0005737)
Chr03	irgsp1_rep	five_prime_UTR	18431113	18431229	.	-	.	Parent=Os03t0437100-01
Chr03	irgsp1_rep	CDS	18430510	18431112	.	-	0	Parent=Os03t0437100-01
Chr03	irgsp1_rep	three_prime_UTR	18430425	18430509	.	-	.	Parent=Os03t0437100-01
Chr03	irgsp1_rep	mRNA	18435990	18437086	.	-	.	ID=Os03t0437200-01;Name=Os03t0437200-01;Locus_id=Os03g0437200;RAP-DB Gene Symbol Synonym(s)=ZFP36;RAP-DB Gene Name Synonym(s)=zinc finger protein 36;CGSNL Gene Symbol=BSRD1;CGSNL Gene Name=BROAD-SPECTRUM RESISTANCE DIGU 1;Oryzabase Gene Symbol Synonym(s)=ZFP36%2C OsZFP36%2C OsBSRD1%2C Bsr-d1%2C bsr-d1%2C DLN91%2C OsDLN91;Oryzabase Gene Name Synonym(s)=zinc finger protein 36%2C broad-spectrum resistance Digu 1%2C DLN repressor 91%2C DLN motif protein 91;Note=C2H2-type zinc finger protein%2C Abscisic acid-induced antioxidant defence%2C Water stress and oxidative stress tolerance;Transcript_evidence=AK059839,HQ858823;ORF_evidence=Q75KE5;GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C C2H2-like (IPR015880),Zinc finger C2H2-type/integrase DNA-binding domain (IPR013087),Zinc finger%2C C2H2 (IPR007087);NIAS_FLcDNA=006-206-D03;Manual Curation=July 16%2C 2015;Literature_PMID=25071223,18987217;Oryzabase=16190;Expression=AK059839;TENOR=Os03t0437200-01;KEGG=Os03t0437200-01
Chr03	irgsp1_rep	five_prime_UTR	18436947	18437086	.	-	.	Parent=Os03t0437200-01
Chr03	irgsp1_rep	CDS	18436284	18436946	.	-	0	Parent=Os03t0437200-01
Chr03	irgsp1_rep	three_prime_UTR	18435990	18436283	.	-	.	Parent=Os03t0437200-01
Chr03	irgsp1_rep	mRNA	18449248	18449751	.	+	.	ID=Os03t0437500-01;Name=Os03t0437500-01;Locus_id=Os03g0437500;Note=Conserved hypothetical protein.;Transcript_evidence=AK111380 (DDBJ%2C Best hit);ORF_evidence=Q6ERG3 (UniProt);NIAS_FLcDNA=002-182-B06;TENOR=Os03t0437500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	18449248	18449362	.	+	.	Parent=Os03t0437500-01
Chr03	irgsp1_rep	CDS	18449363	18449554	.	+	0	Parent=Os03t0437500-01
Chr03	irgsp1_rep	three_prime_UTR	18449555	18449751	.	+	.	Parent=Os03t0437500-01
Chr03	irgsp1_rep	mRNA	18451136	18456308	.	-	.	ID=Os03t0437600-01;Name=Os03t0437600-01;Locus_id=Os03g0437600;Oryzabase Gene Symbol Synonym(s)=D14L%2C OsD14L;Oryzabase Gene Name Synonym(s)=Os hydrolase%2C DWARF 14 LIKE%2C hebibaD14L%2C Dwarf14-Like;Note=Similar to Hydrolase.;Transcript_evidence=AK104138 (DDBJ%2C Best hit),AK073355 (DDBJ%2C Best hit),AK104400 (DDBJ%2C Best hit);ORF_evidence=NP_001151350.1 (RefSeq);NIAS_FLcDNA=006-204-H10,J033030A08,006-202-E03;Oryzabase=14746;Expression=AK104138;TENOR=Os03t0437600-01;KEGG=Os03t0437600-01
Chr03	irgsp1_rep	five_prime_UTR	18456161	18456308	.	-	.	Parent=Os03t0437600-01
Chr03	irgsp1_rep	CDS	18455790	18456160	.	-	0	Parent=Os03t0437600-01
Chr03	irgsp1_rep	CDS	18451347	18451791	.	-	1	Parent=Os03t0437600-01
Chr03	irgsp1_rep	three_prime_UTR	18451136	18451346	.	-	.	Parent=Os03t0437600-01
Chr03	irgsp1_rep	mRNA	18451141	18456208	.	-	.	ID=Os03t0437600-02;Name=Os03t0437600-02;Locus_id=Os03g0437600;Oryzabase Gene Symbol Synonym(s)=D14L%2C OsD14L;Oryzabase Gene Name Synonym(s)=Os hydrolase%2C DWARF 14 LIKE%2C hebibaD14L%2C Dwarf14-Like;Note=Similar to Hydrolase.;Transcript_evidence=AK061303 (DDBJ%2C Best hit);ORF_evidence=NP_001151350.1 (RefSeq);NIAS_FLcDNA=006-301-G08;Oryzabase=14746;Expression=AK073355;TENOR=Os03t0437600-02;KEGG=Os03t0437600-02;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	18456161	18456208	.	-	.	Parent=Os03t0437600-02
Chr03	irgsp1_rep	CDS	18455790	18456160	.	-	0	Parent=Os03t0437600-02
Chr03	irgsp1_rep	CDS	18451347	18451791	.	-	1	Parent=Os03t0437600-02
Chr03	irgsp1_rep	three_prime_UTR	18451141	18451346	.	-	.	Parent=Os03t0437600-02
Chr03	irgsp1_rep	mRNA	18455144	18455944	.	-	.	ID=Os03t0437600-03;Name=Os03t0437600-03;Locus_id=Os03g0437600;Oryzabase Gene Symbol Synonym(s)=D14L%2C OsD14L;Oryzabase Gene Name Synonym(s)=Os hydrolase%2C DWARF 14 LIKE%2C hebibaD14L%2C Dwarf14-Like;Note=Similar to sigma factor sigB regulation protein rsbQ.;Transcript_evidence=AK070773 (DDBJ%2C Best hit);ORF_evidence=NP_001151350.1 (RefSeq);NIAS_FLcDNA=J023072C11;Oryzabase=14746;Expression=AK070773;TENOR=Os03t0437600-03;KEGG=Os03t0437600-03
Chr03	irgsp1_rep	CDS	18455675	18455944	.	-	0	Parent=Os03t0437600-03
Chr03	irgsp1_rep	three_prime_UTR	18455144	18455674	.	-	.	Parent=Os03t0437600-03
Chr03	irgsp1_rep	mRNA	18482821	18483620	.	+	.	ID=Os03t0438000-01;Name=Os03t0438000-01;Locus_id=Os03g0438000;Note=Hypothetical protein.;Transcript_evidence=AK119977 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-184-F03;Expression=AK119977;TENOR=Os03t0438000-01;KEGG=Os03t0438000-01
Chr03	irgsp1_rep	five_prime_UTR	18482821	18483072	.	+	.	Parent=Os03t0438000-01
Chr03	irgsp1_rep	CDS	18483073	18483447	.	+	0	Parent=Os03t0438000-01
Chr03	irgsp1_rep	three_prime_UTR	18483448	18483620	.	+	.	Parent=Os03t0438000-01
Chr03	irgsp1_rep	mRNA	18485682	18486983	.	-	.	ID=Os03t0438100-01;Name=Os03t0438100-01;Locus_id=Os03g0438100;RAP-DB Gene Symbol Synonym(s)=AOC%2C OsAOC%2C AOC1%2C HB;RAP-DB Gene Name Synonym(s)=ALLENE OXIDE CYCLASE%2C allene oxide cyclase%2C coleoptile photomorphogenesis 2%2C hebiba%2C hebibaAOC;CGSNL Gene Symbol=AOC;CGSNL Gene Name=ALLENE OXIDE CYCLASE;Oryzabase Gene Symbol Synonym(s)=OsAOC%2C AOC1%2C OsAOC1%2C HB%2C CPM2;Oryzabase Gene Name Synonym(s)=allene oxide cyclase%2C coleoptile photomorphogenesis 2%2C hebiba%2C hebibaAOC;Note=Allene oxide cyclase%2C Biosynthesis of jasmonic acid%2C Defence response;Transcript_evidence=AK071443;ORF_evidence=Q75KD7,Q8L6H4;GO=Molecular Function: isomerase activity (GO:0016853),Cellular Component: chloroplast (GO:0009507);InterPro=Allene oxide cyclase (IPR009410);NIAS_FLcDNA=J023091K18;Manual Curation=April 2%2C 2014;Literature_PMID=23347338;Oryzabase=8766;TENOR=Os03t0438100-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	18486859	18486983	.	-	.	Parent=Os03t0438100-01
Chr03	irgsp1_rep	CDS	18486538	18486858	.	-	0	Parent=Os03t0438100-01
Chr03	irgsp1_rep	CDS	18486039	18486440	.	-	0	Parent=Os03t0438100-01
Chr03	irgsp1_rep	three_prime_UTR	18485682	18486038	.	-	.	Parent=Os03t0438100-01
Chr03	irgsp1_rep	mRNA	18485719	18486874	.	-	.	ID=Os03t0438100-02;Name=Os03t0438100-02;Locus_id=Os03g0438100;CGSNL Gene Symbol=AOC;CGSNL Gene Name=ALLENE OXIDE CYCLASE;Oryzabase Gene Symbol Synonym(s)=OsAOC%2C AOC1%2C OsAOC1%2C HB%2C CPM2;Oryzabase Gene Name Synonym(s)=allene oxide cyclase%2C coleoptile photomorphogenesis 2%2C hebiba%2C hebibaAOC;Note=Similar to Allene oxide cyclase precursor (EC 5.3.99.6) (Allene oxide cylase).;Transcript_evidence=AK060025 (DDBJ%2C Best hit);ORF_evidence=Q8L6H4 (UniProt);GO=Cellular Component: chloroplast (GO:0009507),Molecular Function: isomerase activity (GO:0016853);InterPro=Allene oxide cyclase (IPR009410);NIAS_FLcDNA=006-303-B07;Oryzabase=8766;TENOR=Os03t0438100-02;KEGG=Os03t0438100-02 (EC:5.3.99.6)
Chr03	irgsp1_rep	five_prime_UTR	18486859	18486874	.	-	.	Parent=Os03t0438100-02
Chr03	irgsp1_rep	CDS	18486538	18486858	.	-	0	Parent=Os03t0438100-02
Chr03	irgsp1_rep	CDS	18486039	18486440	.	-	0	Parent=Os03t0438100-02
Chr03	irgsp1_rep	three_prime_UTR	18485719	18486038	.	-	.	Parent=Os03t0438100-02
Chr03	irgsp1_rep	mRNA	18487715	18488371	.	-	.	ID=Os03t0438200-01;Name=Os03t0438200-01;Locus_id=Os03g0438200;Note=Conserved hypothetical protein.;Transcript_evidence=AK105182 (DDBJ%2C Best hit);ORF_evidence=A3AJG3 (UniProt);NIAS_FLcDNA=001-105-G09;Expression=AK105182;TENOR=Os03t0438200-01;KEGG=Os03t0438200-01
Chr03	irgsp1_rep	five_prime_UTR	18488284	18488371	.	-	.	Parent=Os03t0438200-01
Chr03	irgsp1_rep	CDS	18487846	18488283	.	-	0	Parent=Os03t0438200-01
Chr03	irgsp1_rep	three_prime_UTR	18487715	18487845	.	-	.	Parent=Os03t0438200-01
Chr03	irgsp1_rep	mRNA	18495806	18500989	.	+	.	ID=Os03t0438400-01;Name=Os03t0438400-01;Locus_id=Os03g0438400;Note=Hypothetical protein.;Transcript_evidence=AK070383 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023054E02;TENOR=Os03t0438400-01
Chr03	irgsp1_rep	five_prime_UTR	18495806	18496117	.	+	.	Parent=Os03t0438400-01
Chr03	irgsp1_rep	CDS	18496118	18496366	.	+	0	Parent=Os03t0438400-01
Chr03	irgsp1_rep	CDS	18496668	18496793	.	+	0	Parent=Os03t0438400-01
Chr03	irgsp1_rep	three_prime_UTR	18496794	18497070	.	+	.	Parent=Os03t0438400-01
Chr03	irgsp1_rep	three_prime_UTR	18500049	18500125	.	+	.	Parent=Os03t0438400-01
Chr03	irgsp1_rep	three_prime_UTR	18500215	18500275	.	+	.	Parent=Os03t0438400-01
Chr03	irgsp1_rep	three_prime_UTR	18500370	18500989	.	+	.	Parent=Os03t0438400-01
Chr03	irgsp1_rep	mRNA	18530548	18531460	.	+	.	ID=Os03t0438900-01;Name=Os03t0438900-01;Locus_id=Os03g0438900;Note=Hypothetical protein.;Transcript_evidence=AK111048 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-175-C02;Expression=AK111048;TENOR=Os03t0438900-01;KEGG=Os03t0438900-01
Chr03	irgsp1_rep	five_prime_UTR	18530548	18530786	.	+	.	Parent=Os03t0438900-01
Chr03	irgsp1_rep	CDS	18530787	18531227	.	+	0	Parent=Os03t0438900-01
Chr03	irgsp1_rep	three_prime_UTR	18531228	18531460	.	+	.	Parent=Os03t0438900-01
Chr03	irgsp1_rep	mRNA	18538968	18539959	.	+	.	ID=Os03t0439000-01;Name=Os03t0439000-01;Locus_id=Os03g0439000;Note=Conserved hypothetical protein.;Transcript_evidence=AK108264 (DDBJ%2C Best hit);ORF_evidence=Q75KC6 (UniProt);NIAS_FLcDNA=002-141-B08;Expression=AK108264;TENOR=Os03t0439000-01;KEGG=Os03t0439000-01
Chr03	irgsp1_rep	CDS	18538968	18539915	.	+	0	Parent=Os03t0439000-01
Chr03	irgsp1_rep	three_prime_UTR	18539916	18539959	.	+	.	Parent=Os03t0439000-01
Chr03	irgsp1_rep	mRNA	18550126	18550710	.	-	.	ID=Os03t0439250-00;Name=Os03t0439250-00;Locus_id=Os03g0439250;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001173490.1 (RefSeq);TENOR=Os03t0439250-00;KEGG=Os03t0439250-00
Chr03	irgsp1_rep	CDS	18550126	18550710	.	-	0	Parent=Os03t0439250-00
Chr03	irgsp1_rep	mRNA	18569114	18572504	.	+	.	ID=Os03t0439500-01;Name=Os03t0439500-01;Locus_id=Os03g0439500;CGSNL Gene Symbol=2ODD25;CGSNL Gene Name=2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 25;Oryzabase Gene Symbol Synonym(s)=2-ODD25%2C Os2-ODD25%2C Os2ODD25;Oryzabase Gene Name Synonym(s)=2-oxoglutarate-dependent dioxygenase 25;Note=2OG-Fe(II) oxygenase domain containing protein.;Transcript_evidence=AK067507 (DDBJ%2C Best hit);ORF_evidence=B6TBV5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=J013109I01;Oryzabase=22626;Expression=AK067507;TENOR=Os03t0439500-01;KEGG=Os03t0439500-01
Chr03	irgsp1_rep	five_prime_UTR	18569114	18569277	.	+	.	Parent=Os03t0439500-01
Chr03	irgsp1_rep	five_prime_UTR	18569882	18570718	.	+	.	Parent=Os03t0439500-01
Chr03	irgsp1_rep	CDS	18570719	18571021	.	+	0	Parent=Os03t0439500-01
Chr03	irgsp1_rep	CDS	18571135	18571379	.	+	0	Parent=Os03t0439500-01
Chr03	irgsp1_rep	CDS	18571620	18572190	.	+	1	Parent=Os03t0439500-01
Chr03	irgsp1_rep	three_prime_UTR	18572191	18572504	.	+	.	Parent=Os03t0439500-01
Chr03	irgsp1_rep	mRNA	18570651	18572507	.	+	.	ID=Os03t0439500-02;Name=Os03t0439500-02;Locus_id=Os03g0439500;CGSNL Gene Symbol=2ODD25;CGSNL Gene Name=2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 25;Oryzabase Gene Symbol Synonym(s)=2-ODD25%2C Os2-ODD25%2C Os2ODD25;Oryzabase Gene Name Synonym(s)=2-oxoglutarate-dependent dioxygenase 25;Note=2OG-Fe(II) oxygenase domain containing protein.;Transcript_evidence=AK067647 (DDBJ%2C Best hit);ORF_evidence=B6TBV5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=J013111O20;Oryzabase=22626;Expression=AK067647;TENOR=Os03t0439500-02;KEGG=Os03t0439500-02
Chr03	irgsp1_rep	five_prime_UTR	18570651	18570718	.	+	.	Parent=Os03t0439500-02
Chr03	irgsp1_rep	CDS	18570719	18571021	.	+	0	Parent=Os03t0439500-02
Chr03	irgsp1_rep	CDS	18571135	18571379	.	+	0	Parent=Os03t0439500-02
Chr03	irgsp1_rep	CDS	18571620	18572190	.	+	1	Parent=Os03t0439500-02
Chr03	irgsp1_rep	three_prime_UTR	18572191	18572507	.	+	.	Parent=Os03t0439500-02
Chr03	irgsp1_rep	mRNA	18570674	18572504	.	+	.	ID=Os03t0439500-03;Name=Os03t0439500-03;Locus_id=Os03g0439500;CGSNL Gene Symbol=2ODD25;CGSNL Gene Name=2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 25;Oryzabase Gene Symbol Synonym(s)=2-ODD25%2C Os2-ODD25%2C Os2ODD25;Oryzabase Gene Name Synonym(s)=2-oxoglutarate-dependent dioxygenase 25;Note=2OG-Fe(II) oxygenase domain containing protein.;Transcript_evidence=AK119216 (DDBJ%2C Best hit);ORF_evidence=B6TBV5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=001-043-E12;Oryzabase=22626;Expression=AK119216;TENOR=Os03t0439500-03;KEGG=Os03t0439500-03
Chr03	irgsp1_rep	five_prime_UTR	18570674	18570718	.	+	.	Parent=Os03t0439500-03
Chr03	irgsp1_rep	CDS	18570719	18571021	.	+	0	Parent=Os03t0439500-03
Chr03	irgsp1_rep	CDS	18571135	18571379	.	+	0	Parent=Os03t0439500-03
Chr03	irgsp1_rep	CDS	18571620	18572190	.	+	1	Parent=Os03t0439500-03
Chr03	irgsp1_rep	three_prime_UTR	18572191	18572504	.	+	.	Parent=Os03t0439500-03
Chr03	irgsp1_rep	mRNA	18571446	18572505	.	+	.	ID=Os03t0439500-04;Name=Os03t0439500-04;Locus_id=Os03g0439500;CGSNL Gene Symbol=2ODD25;CGSNL Gene Name=2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 25;Oryzabase Gene Symbol Synonym(s)=2-ODD25%2C Os2-ODD25%2C Os2ODD25;Oryzabase Gene Name Synonym(s)=2-oxoglutarate-dependent dioxygenase 25;Note=Similar to cDNA clone:001-043-E12%2C full insert sequence.;Transcript_evidence=AK060946 (DDBJ%2C Best hit),AK104779 (DDBJ%2C Best hit);ORF_evidence=B6TBV5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=006-201-F02,001-039-C04;Oryzabase=22626;TENOR=Os03t0439500-04;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	18571446	18571605	.	+	.	Parent=Os03t0439500-04
Chr03	irgsp1_rep	CDS	18571606	18572190	.	+	0	Parent=Os03t0439500-04
Chr03	irgsp1_rep	three_prime_UTR	18572191	18572505	.	+	.	Parent=Os03t0439500-04
Chr03	irgsp1_rep	mRNA	18570881	18571946	.	-	.	ID=Os03t0439650-00;Name=Os03t0439650-00;Locus_id=Os03g0439650;Note=Hypothetical protein.;Transcript_evidence=EU953848 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0439650-00
Chr03	irgsp1_rep	five_prime_UTR	18571755	18571946	.	-	.	Parent=Os03t0439650-00
Chr03	irgsp1_rep	CDS	18571628	18571754	.	-	0	Parent=Os03t0439650-00
Chr03	irgsp1_rep	CDS	18571282	18571382	.	-	2	Parent=Os03t0439650-00
Chr03	irgsp1_rep	three_prime_UTR	18570881	18571281	.	-	.	Parent=Os03t0439650-00
Chr03	irgsp1_rep	mRNA	18575450	18577554	.	-	.	ID=Os03t0439700-01;Name=Os03t0439700-01;Locus_id=Os03g0439700;Note=Protein of unknown function DUF1230 family protein.;Transcript_evidence=AK065720 (DDBJ%2C Best hit);ORF_evidence=Q75KB9 (UniProt);InterPro=Uncharacterised protein family Ycf36 (IPR009631);NIAS_FLcDNA=J013041G12;Expression=AK065720;TENOR=Os03t0439700-01;KEGG=Os03t0439700-01
Chr03	irgsp1_rep	five_prime_UTR	18577485	18577554	.	-	.	Parent=Os03t0439700-01
Chr03	irgsp1_rep	CDS	18577230	18577484	.	-	0	Parent=Os03t0439700-01
Chr03	irgsp1_rep	CDS	18576890	18577042	.	-	0	Parent=Os03t0439700-01
Chr03	irgsp1_rep	CDS	18576601	18576678	.	-	0	Parent=Os03t0439700-01
Chr03	irgsp1_rep	CDS	18576313	18576408	.	-	0	Parent=Os03t0439700-01
Chr03	irgsp1_rep	CDS	18576133	18576168	.	-	0	Parent=Os03t0439700-01
Chr03	irgsp1_rep	CDS	18575872	18576029	.	-	0	Parent=Os03t0439700-01
Chr03	irgsp1_rep	CDS	18575637	18575799	.	-	1	Parent=Os03t0439700-01
Chr03	irgsp1_rep	three_prime_UTR	18575450	18575636	.	-	.	Parent=Os03t0439700-01
Chr03	irgsp1_rep	mRNA	18579735	18598590	.	+	.	ID=Os03t0439800-01;Name=Os03t0439800-01;Locus_id=Os03g0439800;Note=Protein of unknown function DUF1909 domain containing protein.;Transcript_evidence=AK066154 (DDBJ%2C Best hit);ORF_evidence=NP_001174742.1 (RefSeq);InterPro=Uncharacterised protein family SERF (IPR007513);NIAS_FLcDNA=J013056J04;Expression=AK066154;TENOR=Os03t0439800-01;KEGG=Os03t0439800-01
Chr03	irgsp1_rep	five_prime_UTR	18579735	18579870	.	+	.	Parent=Os03t0439800-01
Chr03	irgsp1_rep	CDS	18579871	18579943	.	+	0	Parent=Os03t0439800-01
Chr03	irgsp1_rep	CDS	18580066	18580106	.	+	2	Parent=Os03t0439800-01
Chr03	irgsp1_rep	CDS	18598159	18598317	.	+	0	Parent=Os03t0439800-01
Chr03	irgsp1_rep	three_prime_UTR	18598318	18598590	.	+	.	Parent=Os03t0439800-01
Chr03	irgsp1_rep	mRNA	18579768	18581389	.	+	.	ID=Os03t0439800-02;Name=Os03t0439800-02;Locus_id=Os03g0439800;Note=Similar to predicted protein.;Transcript_evidence=AK058503 (DDBJ%2C Best hit);ORF_evidence=Q75KB8 (UniProt);InterPro=Uncharacterised protein family SERF (IPR007513);NIAS_FLcDNA=001-016-F08;Expression=AK058503;TENOR=Os03t0439800-02;KEGG=Os03t0439800-02
Chr03	irgsp1_rep	five_prime_UTR	18579768	18579870	.	+	.	Parent=Os03t0439800-02
Chr03	irgsp1_rep	CDS	18579871	18579943	.	+	0	Parent=Os03t0439800-02
Chr03	irgsp1_rep	CDS	18580066	18580106	.	+	2	Parent=Os03t0439800-02
Chr03	irgsp1_rep	CDS	18580850	18580882	.	+	0	Parent=Os03t0439800-02
Chr03	irgsp1_rep	three_prime_UTR	18580883	18581389	.	+	.	Parent=Os03t0439800-02
Chr03	irgsp1_rep	mRNA	18583128	18584921	.	+	.	ID=Os03t0439900-01;Name=Os03t0439900-01;Locus_id=Os03g0439900;Note=Similar to OSIGBa0092G14.3 protein.;Transcript_evidence=AK107240 (DDBJ%2C Best hit);ORF_evidence=Q01KX9 (UniProt);NIAS_FLcDNA=002-125-F04;TENOR=Os03t0439900-01
Chr03	irgsp1_rep	five_prime_UTR	18583128	18583299	.	+	.	Parent=Os03t0439900-01
Chr03	irgsp1_rep	CDS	18583300	18584562	.	+	0	Parent=Os03t0439900-01
Chr03	irgsp1_rep	three_prime_UTR	18584563	18584921	.	+	.	Parent=Os03t0439900-01
Chr03	irgsp1_rep	mRNA	18603057	18608859	.	-	.	ID=Os03t0440200-00;Name=Os03t0440200-00;Locus_id=Os03g0440200;Note=Similar to OSIGBa0076I14.10 protein.;Transcript_evidence=AK362665 (DDBJ);ORF_evidence=Q01L82 (UniProt);TENOR=Os03t0440200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	18608560	18608859	.	-	0	Parent=Os03t0440200-00
Chr03	irgsp1_rep	CDS	18608325	18608466	.	-	0	Parent=Os03t0440200-00
Chr03	irgsp1_rep	CDS	18608063	18608202	.	-	2	Parent=Os03t0440200-00
Chr03	irgsp1_rep	CDS	18607561	18607758	.	-	0	Parent=Os03t0440200-00
Chr03	irgsp1_rep	CDS	18607259	18607456	.	-	0	Parent=Os03t0440200-00
Chr03	irgsp1_rep	CDS	18607132	18607167	.	-	0	Parent=Os03t0440200-00
Chr03	irgsp1_rep	CDS	18606881	18606966	.	-	0	Parent=Os03t0440200-00
Chr03	irgsp1_rep	CDS	18606645	18606695	.	-	1	Parent=Os03t0440200-00
Chr03	irgsp1_rep	CDS	18606155	18606263	.	-	1	Parent=Os03t0440200-00
Chr03	irgsp1_rep	CDS	18605957	18606062	.	-	0	Parent=Os03t0440200-00
Chr03	irgsp1_rep	CDS	18605685	18605782	.	-	2	Parent=Os03t0440200-00
Chr03	irgsp1_rep	CDS	18605506	18605610	.	-	0	Parent=Os03t0440200-00
Chr03	irgsp1_rep	CDS	18605319	18605411	.	-	0	Parent=Os03t0440200-00
Chr03	irgsp1_rep	CDS	18605127	18605180	.	-	0	Parent=Os03t0440200-00
Chr03	irgsp1_rep	CDS	18604749	18604807	.	-	0	Parent=Os03t0440200-00
Chr03	irgsp1_rep	CDS	18604579	18604663	.	-	1	Parent=Os03t0440200-00
Chr03	irgsp1_rep	CDS	18604144	18604503	.	-	0	Parent=Os03t0440200-00
Chr03	irgsp1_rep	CDS	18603919	18604041	.	-	0	Parent=Os03t0440200-00
Chr03	irgsp1_rep	CDS	18603358	18603444	.	-	0	Parent=Os03t0440200-00
Chr03	irgsp1_rep	CDS	18603057	18603275	.	-	0	Parent=Os03t0440200-00
Chr03	irgsp1_rep	mRNA	18635904	18638389	.	+	.	ID=Os03t0440900-01;Name=Os03t0440900-01;Locus_id=Os03g0440900;Oryzabase Gene Symbol Synonym(s)=OsI-BAK1%2C I-BAK1;Note=Similar to LRR protein.;Transcript_evidence=AK069710 (DDBJ%2C Best hit);ORF_evidence=Q5XUV2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J023031G03;Oryzabase=19893;Expression=AK069710;TENOR=Os03t0440900-01;KEGG=Os03t0440900-01
Chr03	irgsp1_rep	five_prime_UTR	18635904	18636038	.	+	.	Parent=Os03t0440900-01
Chr03	irgsp1_rep	CDS	18636039	18636265	.	+	0	Parent=Os03t0440900-01
Chr03	irgsp1_rep	CDS	18636793	18636864	.	+	1	Parent=Os03t0440900-01
Chr03	irgsp1_rep	CDS	18636963	18637106	.	+	1	Parent=Os03t0440900-01
Chr03	irgsp1_rep	CDS	18637459	18637530	.	+	1	Parent=Os03t0440900-01
Chr03	irgsp1_rep	CDS	18637623	18637694	.	+	1	Parent=Os03t0440900-01
Chr03	irgsp1_rep	CDS	18638086	18638155	.	+	1	Parent=Os03t0440900-01
Chr03	irgsp1_rep	three_prime_UTR	18638156	18638389	.	+	.	Parent=Os03t0440900-01
Chr03	irgsp1_rep	mRNA	18635966	18638510	.	+	.	ID=Os03t0440900-02;Name=Os03t0440900-02;Locus_id=Os03g0440900;Oryzabase Gene Symbol Synonym(s)=OsI-BAK1%2C I-BAK1;Note=Similar to LRR protein.;Transcript_evidence=AK061730 (DDBJ%2C Best hit);ORF_evidence=Q5XUV2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=001-038-C03;Oryzabase=19893;Expression=AK061730;TENOR=Os03t0440900-02;KEGG=Os03t0440900-02
Chr03	irgsp1_rep	five_prime_UTR	18635966	18636038	.	+	.	Parent=Os03t0440900-02
Chr03	irgsp1_rep	CDS	18636039	18636265	.	+	0	Parent=Os03t0440900-02
Chr03	irgsp1_rep	CDS	18636793	18636864	.	+	1	Parent=Os03t0440900-02
Chr03	irgsp1_rep	CDS	18636963	18637106	.	+	1	Parent=Os03t0440900-02
Chr03	irgsp1_rep	CDS	18637459	18637530	.	+	1	Parent=Os03t0440900-02
Chr03	irgsp1_rep	CDS	18637623	18637694	.	+	1	Parent=Os03t0440900-02
Chr03	irgsp1_rep	CDS	18638086	18638155	.	+	1	Parent=Os03t0440900-02
Chr03	irgsp1_rep	three_prime_UTR	18638156	18638510	.	+	.	Parent=Os03t0440900-02
Chr03	irgsp1_rep	mRNA	18638520	18647607	.	-	.	ID=Os03t0441000-01;Name=Os03t0441000-01;Locus_id=Os03g0441000;Note=Similar to Transcription initiation factor TFIID component TAF4 family protein%2C expressed.;Transcript_evidence=AK120625 (DDBJ%2C Best hit);ORF_evidence=Q10IY9 (UniProt);GO=Biological Process: transcription initiation%2C DNA-dependent (GO:0006352),Cellular Component: transcription factor TFIID complex (GO:0005669);InterPro=Transcription initiation factor TFIID component TAF4 (IPR007900),RST domain of plant C-terminal (IPR022003);NIAS_FLcDNA=J013152M06;Expression=AK120625;TENOR=Os03t0441000-01;KEGG=Os03t0441000-01
Chr03	irgsp1_rep	five_prime_UTR	18647536	18647607	.	-	.	Parent=Os03t0441000-01
Chr03	irgsp1_rep	CDS	18647500	18647535	.	-	0	Parent=Os03t0441000-01
Chr03	irgsp1_rep	CDS	18647256	18647385	.	-	0	Parent=Os03t0441000-01
Chr03	irgsp1_rep	CDS	18643976	18644391	.	-	2	Parent=Os03t0441000-01
Chr03	irgsp1_rep	CDS	18643772	18643867	.	-	0	Parent=Os03t0441000-01
Chr03	irgsp1_rep	CDS	18642944	18643549	.	-	0	Parent=Os03t0441000-01
Chr03	irgsp1_rep	CDS	18642731	18642847	.	-	0	Parent=Os03t0441000-01
Chr03	irgsp1_rep	CDS	18641081	18641199	.	-	0	Parent=Os03t0441000-01
Chr03	irgsp1_rep	CDS	18640907	18640994	.	-	1	Parent=Os03t0441000-01
Chr03	irgsp1_rep	CDS	18640666	18640801	.	-	0	Parent=Os03t0441000-01
Chr03	irgsp1_rep	CDS	18640528	18640583	.	-	2	Parent=Os03t0441000-01
Chr03	irgsp1_rep	CDS	18640402	18640458	.	-	0	Parent=Os03t0441000-01
Chr03	irgsp1_rep	CDS	18640170	18640316	.	-	0	Parent=Os03t0441000-01
Chr03	irgsp1_rep	CDS	18639734	18639805	.	-	0	Parent=Os03t0441000-01
Chr03	irgsp1_rep	CDS	18639414	18639645	.	-	0	Parent=Os03t0441000-01
Chr03	irgsp1_rep	CDS	18638872	18639023	.	-	2	Parent=Os03t0441000-01
Chr03	irgsp1_rep	three_prime_UTR	18638520	18638871	.	-	.	Parent=Os03t0441000-01
Chr03	irgsp1_rep	mRNA	18640729	18647577	.	-	.	ID=Os03t0441000-02;Name=Os03t0441000-02;Locus_id=Os03g0441000;Note=Similar to Transcription initiation factor TFIID component TAF4 family protein%2C expressed.;Transcript_evidence=AK070997 (DDBJ%2C Best hit);ORF_evidence=Q10IY9 (UniProt);GO=Biological Process: transcription initiation%2C DNA-dependent (GO:0006352),Cellular Component: transcription factor TFIID complex (GO:0005669);InterPro=Transcription initiation factor TFIID component TAF4 (IPR007900),RST domain of plant C-terminal (IPR022003);NIAS_FLcDNA=J023077I17;TENOR=Os03t0441000-02
Chr03	irgsp1_rep	five_prime_UTR	18647536	18647577	.	-	.	Parent=Os03t0441000-02
Chr03	irgsp1_rep	CDS	18647500	18647535	.	-	0	Parent=Os03t0441000-02
Chr03	irgsp1_rep	CDS	18647256	18647385	.	-	0	Parent=Os03t0441000-02
Chr03	irgsp1_rep	CDS	18643976	18644391	.	-	2	Parent=Os03t0441000-02
Chr03	irgsp1_rep	CDS	18643772	18643867	.	-	0	Parent=Os03t0441000-02
Chr03	irgsp1_rep	CDS	18642944	18643549	.	-	0	Parent=Os03t0441000-02
Chr03	irgsp1_rep	CDS	18642731	18642847	.	-	0	Parent=Os03t0441000-02
Chr03	irgsp1_rep	CDS	18641081	18641199	.	-	0	Parent=Os03t0441000-02
Chr03	irgsp1_rep	CDS	18640907	18640994	.	-	1	Parent=Os03t0441000-02
Chr03	irgsp1_rep	CDS	18640729	18640801	.	-	0	Parent=Os03t0441000-02
Chr03	irgsp1_rep	mRNA	18639989	18643290	.	-	.	ID=Os03t0441000-03;Name=Os03t0441000-03;Locus_id=Os03g0441000;Note=Similar to Transcription initiation factor TFIID component TAF4 family protein%2C expressed.;Transcript_evidence=AK108726 (DDBJ%2C Best hit);ORF_evidence=Q10IY9 (UniProt);GO=Biological Process: transcription initiation%2C DNA-dependent (GO:0006352),Cellular Component: transcription factor TFIID complex (GO:0005669);InterPro=Transcription initiation factor TFIID component TAF4 (IPR007900);NIAS_FLcDNA=002-150-C10;TENOR=Os03t0441000-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	18643289	18643290	.	-	.	Parent=Os03t0441000-03
Chr03	irgsp1_rep	CDS	18642944	18643288	.	-	0	Parent=Os03t0441000-03
Chr03	irgsp1_rep	CDS	18642731	18642847	.	-	0	Parent=Os03t0441000-03
Chr03	irgsp1_rep	CDS	18641081	18641199	.	-	0	Parent=Os03t0441000-03
Chr03	irgsp1_rep	CDS	18640907	18640994	.	-	1	Parent=Os03t0441000-03
Chr03	irgsp1_rep	CDS	18640666	18640801	.	-	0	Parent=Os03t0441000-03
Chr03	irgsp1_rep	CDS	18640528	18640583	.	-	2	Parent=Os03t0441000-03
Chr03	irgsp1_rep	CDS	18640402	18640458	.	-	0	Parent=Os03t0441000-03
Chr03	irgsp1_rep	CDS	18640116	18640316	.	-	0	Parent=Os03t0441000-03
Chr03	irgsp1_rep	three_prime_UTR	18639989	18640115	.	-	.	Parent=Os03t0441000-03
Chr03	irgsp1_rep	mRNA	18638648	18639573	.	+	.	ID=Os03t0441050-00;Name=Os03t0441050-00;Locus_id=Os03g0441050;Note=Hypothetical protein.;Transcript_evidence=BT018959 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0441050-00
Chr03	irgsp1_rep	five_prime_UTR	18638648	18638690	.	+	.	Parent=Os03t0441050-00
Chr03	irgsp1_rep	CDS	18638691	18638981	.	+	0	Parent=Os03t0441050-00
Chr03	irgsp1_rep	three_prime_UTR	18638982	18639024	.	+	.	Parent=Os03t0441050-00
Chr03	irgsp1_rep	three_prime_UTR	18639391	18639573	.	+	.	Parent=Os03t0441050-00
Chr03	irgsp1_rep	mRNA	18648052	18648490	.	+	.	ID=Os03t0441101-00;Name=Os03t0441101-00;Locus_id=Os03g0441101;Note=Similar to H0323C08.17 protein.;Transcript_evidence=EU971782 (DDBJ);ORF_evidence=Q25A32 (UniProt);TENOR=Os03t0441101-00;KEGG=Os03t0441101-00
Chr03	irgsp1_rep	CDS	18648052	18648489	.	+	0	Parent=Os03t0441101-00
Chr03	irgsp1_rep	three_prime_UTR	18648490	18648490	.	+	.	Parent=Os03t0441101-00
Chr03	irgsp1_rep	mRNA	18678369	18682844	.	-	.	ID=Os03t0441400-01;Name=Os03t0441400-01;Locus_id=Os03g0441400;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK106680 (DDBJ%2C Best hit);ORF_evidence=Q8S693 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-114-B02;Expression=AK106680;TENOR=Os03t0441400-01;KEGG=Os03t0441400-01
Chr03	irgsp1_rep	five_prime_UTR	18682438	18682844	.	-	.	Parent=Os03t0441400-01
Chr03	irgsp1_rep	CDS	18679924	18682437	.	-	0	Parent=Os03t0441400-01
Chr03	irgsp1_rep	three_prime_UTR	18679806	18679923	.	-	.	Parent=Os03t0441400-01
Chr03	irgsp1_rep	three_prime_UTR	18678768	18678952	.	-	.	Parent=Os03t0441400-01
Chr03	irgsp1_rep	three_prime_UTR	18678369	18678609	.	-	.	Parent=Os03t0441400-01
Chr03	irgsp1_rep	mRNA	18676911	18682796	.	-	.	ID=Os03t0441400-02;Name=Os03t0441400-02;Locus_id=Os03g0441400;Note=Hypothetical conserved gene.;Transcript_evidence=AK119273 (DDBJ%2C Best hit);ORF_evidence=B9F983 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-130-B05;Expression=AK119273;TENOR=Os03t0441400-02;KEGG=Os03t0441400-02
Chr03	irgsp1_rep	five_prime_UTR	18682438	18682796	.	-	.	Parent=Os03t0441400-02
Chr03	irgsp1_rep	CDS	18680395	18682437	.	-	0	Parent=Os03t0441400-02
Chr03	irgsp1_rep	CDS	18677325	18677357	.	-	0	Parent=Os03t0441400-02
Chr03	irgsp1_rep	three_prime_UTR	18676911	18677324	.	-	.	Parent=Os03t0441400-02
Chr03	irgsp1_rep	mRNA	18679874	18682789	.	-	.	ID=Os03t0441400-03;Name=Os03t0441400-03;Locus_id=Os03g0441400;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK119281 (DDBJ%2C Best hit);ORF_evidence=Q8S693 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-130-C06;Expression=AK119281;TENOR=Os03t0441400-03;KEGG=Os03t0441400-03
Chr03	irgsp1_rep	five_prime_UTR	18682438	18682789	.	-	.	Parent=Os03t0441400-03
Chr03	irgsp1_rep	CDS	18679924	18682437	.	-	0	Parent=Os03t0441400-03
Chr03	irgsp1_rep	three_prime_UTR	18679874	18679923	.	-	.	Parent=Os03t0441400-03
Chr03	irgsp1_rep	mRNA	18686899	18689372	.	-	.	ID=Os03t0441500-01;Name=Os03t0441500-01;Locus_id=Os03g0441500;CGSNL Gene Symbol=ABCF2;CGSNL Gene Name=ABC TRANSPORTER F FAMILY MEMBER 2;Oryzabase Gene Symbol Synonym(s)=OsABCF2;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCF subgroup member 2;Note=ABC transporter-like domain containing protein.;Transcript_evidence=AK102700 (DDBJ%2C Best hit);ORF_evidence=Q65CB1 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=J033103K23;Oryzabase=11976;Expression=AK102700;TENOR=Os03t0441500-01;KEGG=Os03t0441500-01
Chr03	irgsp1_rep	five_prime_UTR	18689302	18689372	.	-	.	Parent=Os03t0441500-01
Chr03	irgsp1_rep	CDS	18687169	18689301	.	-	0	Parent=Os03t0441500-01
Chr03	irgsp1_rep	three_prime_UTR	18686899	18687168	.	-	.	Parent=Os03t0441500-01
Chr03	irgsp1_rep	mRNA	18686905	18688616	.	-	.	ID=Os03t0441500-02;Name=Os03t0441500-02;Locus_id=Os03g0441500;CGSNL Gene Symbol=ABCF2;CGSNL Gene Name=ABC TRANSPORTER F FAMILY MEMBER 2;Oryzabase Gene Symbol Synonym(s)=OsABCF2;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCF subgroup member 2;Note=Similar to ABC transporter.;Transcript_evidence=AK060827 (DDBJ%2C Best hit);ORF_evidence=A3AJH2 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593);NIAS_FLcDNA=001-034-B11;Oryzabase=11976;Expression=AK060827;TENOR=Os03t0441500-02;KEGG=Os03t0441500-02
Chr03	irgsp1_rep	five_prime_UTR	18688615	18688616	.	-	.	Parent=Os03t0441500-02
Chr03	irgsp1_rep	CDS	18687169	18688614	.	-	0	Parent=Os03t0441500-02
Chr03	irgsp1_rep	three_prime_UTR	18686905	18687168	.	-	.	Parent=Os03t0441500-02
Chr03	irgsp1_rep	mRNA	18692209	18693697	.	-	.	ID=Os03t0441601-01;Name=Os03t0441601-01;Locus_id=Os03g0441601;Note=Hypothetical conserved gene.;Transcript_evidence=AK241603 (DDBJ%2C Best hit);ORF_evidence=B9FSE2 (UniProt);NIAS_FLcDNA=J065183N19;TENOR=Os03t0441601-01;KEGG=Os03t0441601-01
Chr03	irgsp1_rep	five_prime_UTR	18693542	18693697	.	-	.	Parent=Os03t0441601-01
Chr03	irgsp1_rep	five_prime_UTR	18692583	18692602	.	-	.	Parent=Os03t0441601-01
Chr03	irgsp1_rep	CDS	18692532	18692582	.	-	0	Parent=Os03t0441601-01
Chr03	irgsp1_rep	CDS	18692233	18692376	.	-	0	Parent=Os03t0441601-01
Chr03	irgsp1_rep	three_prime_UTR	18692209	18692232	.	-	.	Parent=Os03t0441601-01
Chr03	irgsp1_rep	mRNA	18694131	18695033	.	+	.	ID=Os03t0441700-00;Name=Os03t0441700-00;Locus_id=Os03g0441700;Note=Similar to Growth-regulating factor 1.;Transcript_evidence=EF515848 (DDBJ);ORF_evidence=Q9SDZ5 (UniProt);TENOR=Os03t0441700-00;KEGG=Os03t0441700-00
Chr03	irgsp1_rep	CDS	18694131	18694922	.	+	0	Parent=Os03t0441700-00
Chr03	irgsp1_rep	three_prime_UTR	18694923	18695033	.	+	.	Parent=Os03t0441700-00
Chr03	irgsp1_rep	mRNA	18768610	18770180	.	-	.	ID=Os03t0442800-01;Name=Os03t0442800-01;Locus_id=Os03g0442800;Note=Hypothetical gene.;Transcript_evidence=AK064458 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=002-110-G02;Expression=AK064458;TENOR=Os03t0442800-01;KEGG=Os03t0442800-01
Chr03	irgsp1_rep	five_prime_UTR	18770179	18770180	.	-	.	Parent=Os03t0442800-01
Chr03	irgsp1_rep	CDS	18769870	18770178	.	-	0	Parent=Os03t0442800-01
Chr03	irgsp1_rep	three_prime_UTR	18769837	18769869	.	-	.	Parent=Os03t0442800-01
Chr03	irgsp1_rep	three_prime_UTR	18768610	18769745	.	-	.	Parent=Os03t0442800-01
Chr03	irgsp1_rep	mRNA	18769032	18770455	.	+	.	ID=Os03t0442900-01;Name=Os03t0442900-01;Locus_id=Os03g0442900;Note=Conserved hypothetical protein.;Transcript_evidence=AK099556 (DDBJ%2C Best hit);ORF_evidence=B8AKG8 (UniProt);NIAS_FLcDNA=J013033P18;Expression=AK099556;TENOR=Os03t0442900-01;KEGG=Os03t0442900-01
Chr03	irgsp1_rep	five_prime_UTR	18769032	18769507	.	+	.	Parent=Os03t0442900-01
Chr03	irgsp1_rep	CDS	18769508	18769588	.	+	0	Parent=Os03t0442900-01
Chr03	irgsp1_rep	CDS	18769691	18770185	.	+	0	Parent=Os03t0442900-01
Chr03	irgsp1_rep	three_prime_UTR	18770186	18770455	.	+	.	Parent=Os03t0442900-01
Chr03	irgsp1_rep	mRNA	18889278	18890595	.	+	.	ID=Os03t0444900-00;Name=Os03t0444900-00;Locus_id=Os03g0444900;CGSNL Gene Symbol=WRKY81;CGSNL Gene Name=WRKY GENE 81;Oryzabase Gene Symbol Synonym(s)=OsWRKY81%2C OsWRKY33;Note=Similar to WRKY transcription factor 30.;Transcript_evidence=AY302436 (DDBJ%2C Best hit);ORF_evidence=Q10IU8 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=8967;TENOR=Os03t0444900-00
Chr03	irgsp1_rep	five_prime_UTR	18889278	18889282	.	+	.	Parent=Os03t0444900-00
Chr03	irgsp1_rep	CDS	18889283	18890130	.	+	0	Parent=Os03t0444900-00
Chr03	irgsp1_rep	CDS	18890208	18890330	.	+	1	Parent=Os03t0444900-00
Chr03	irgsp1_rep	CDS	18890447	18890595	.	+	1	Parent=Os03t0444900-00
Chr03	irgsp1_rep	mRNA	18935194	18936295	.	-	.	ID=Os03t0445700-01;Name=Os03t0445700-01;Locus_id=Os03g0445700;RAP-DB Gene Symbol Synonym(s)=OsLBD37;RAP-DB Gene Name Synonym(s)=LATERAL ORGAN BOUNDARIES DOMAIN 37;Oryzabase Gene Symbol Synonym(s)=OsLBD37%2C LBD37;Oryzabase Gene Name Synonym(s)=LATERAL ORGAN BOUNDARIES DOMAIN 37%2C lateral organ boundaries domain protein 37;Note=LATERAL ORGAN BOUNDARIES DOMAIN (LBD) protein%2C Transcriptional activator%2C Regulation of heading date and yield;Transcript_evidence=AK071624;ORF_evidence=Q6AV61;InterPro=Lateral organ boundaries%2C LOB (IPR004883);NIAS_FLcDNA=J023106M18;Manual Curation=October 26%2C 2017;Literature_PMID=28342864;Oryzabase=21732;Expression=AK071624;TENOR=Os03t0445700-01;KEGG=Os03t0445700-01;Subcellular location=nucleus (GO:0005634)
Chr03	irgsp1_rep	five_prime_UTR	18936182	18936295	.	-	.	Parent=Os03t0445700-01
Chr03	irgsp1_rep	CDS	18935998	18936181	.	-	0	Parent=Os03t0445700-01
Chr03	irgsp1_rep	CDS	18935476	18935906	.	-	2	Parent=Os03t0445700-01
Chr03	irgsp1_rep	three_prime_UTR	18935194	18935475	.	-	.	Parent=Os03t0445700-01
Chr03	irgsp1_rep	mRNA	18985456	18991050	.	+	.	ID=Os03t0446200-00;Name=Os03t0446200-00;Locus_id=Os03g0446200;Note=Hypothetical conserved gene.;Transcript_evidence=AK334161 (DDBJ);ORF_evidence=NP_001149738.1 (RefSeq);InterPro=Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os03t0446200-00;KEGG=Os03t0446200-00
Chr03	irgsp1_rep	five_prime_UTR	18985456	18985920	.	+	.	Parent=Os03t0446200-00
Chr03	irgsp1_rep	five_prime_UTR	18990409	18990542	.	+	.	Parent=Os03t0446200-00
Chr03	irgsp1_rep	CDS	18990543	18990896	.	+	0	Parent=Os03t0446200-00
Chr03	irgsp1_rep	three_prime_UTR	18990897	18991050	.	+	.	Parent=Os03t0446200-00
Chr03	irgsp1_rep	mRNA	19147007	19148677	.	+	.	ID=Os03t0448200-00;Name=Os03t0448200-00;Locus_id=Os03g0448200;CGSNL Gene Symbol=EXO70H2;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H2;Oryzabase Gene Symbol Synonym(s)=OsEXO70H2%2C OsExo70H2%2C OrysaH2_Exo70;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein H2;Note=Similar to Exo70 exocyst complex subunit family protein.;Transcript_evidence=AK357124 (DDBJ);ORF_evidence=Q2RBS0 (UniProt);GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exo70 exocyst complex subunit (IPR004140),Cullin repeat-like-containing domain (IPR016159);Oryzabase=20339;TENOR=Os03t0448200-00
Chr03	irgsp1_rep	CDS	19147007	19148677	.	+	0	Parent=Os03t0448200-00
Chr03	irgsp1_rep	mRNA	19175142	19182580	.	+	.	ID=Os03t0448500-01;Name=Os03t0448500-01;Locus_id=Os03g0448500;Note=Similar to Calcineurin B-like protein 7.;Transcript_evidence=AK103628 (DDBJ%2C Best hit);ORF_evidence=Q3HRP0 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand-like domain (IPR011992);NIAS_FLcDNA=J033133P06;TENOR=Os03t0448500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	19175142	19175653	.	+	.	Parent=Os03t0448500-01
Chr03	irgsp1_rep	five_prime_UTR	19175744	19176186	.	+	.	Parent=Os03t0448500-01
Chr03	irgsp1_rep	five_prime_UTR	19176429	19176512	.	+	.	Parent=Os03t0448500-01
Chr03	irgsp1_rep	CDS	19176513	19176548	.	+	0	Parent=Os03t0448500-01
Chr03	irgsp1_rep	CDS	19176665	19176724	.	+	0	Parent=Os03t0448500-01
Chr03	irgsp1_rep	CDS	19176877	19176985	.	+	0	Parent=Os03t0448500-01
Chr03	irgsp1_rep	CDS	19179415	19179416	.	+	2	Parent=Os03t0448500-01
Chr03	irgsp1_rep	three_prime_UTR	19179417	19182121	.	+	.	Parent=Os03t0448500-01
Chr03	irgsp1_rep	three_prime_UTR	19182331	19182580	.	+	.	Parent=Os03t0448500-01
Chr03	irgsp1_rep	mRNA	19175153	19180642	.	+	.	ID=Os03t0448500-02;Name=Os03t0448500-02;Locus_id=Os03g0448500;Note=Similar to Calcineurin B-like protein 7.;Transcript_evidence=AK069598 (DDBJ%2C Best hit);ORF_evidence=Q3HRP0 (UniProt);NIAS_FLcDNA=J023024N08;TENOR=Os03t0448500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	19175153	19175653	.	+	.	Parent=Os03t0448500-02
Chr03	irgsp1_rep	five_prime_UTR	19175744	19176186	.	+	.	Parent=Os03t0448500-02
Chr03	irgsp1_rep	five_prime_UTR	19176429	19176548	.	+	.	Parent=Os03t0448500-02
Chr03	irgsp1_rep	five_prime_UTR	19176665	19176680	.	+	.	Parent=Os03t0448500-02
Chr03	irgsp1_rep	CDS	19176681	19176782	.	+	0	Parent=Os03t0448500-02
Chr03	irgsp1_rep	CDS	19176877	19176985	.	+	0	Parent=Os03t0448500-02
Chr03	irgsp1_rep	CDS	19179415	19179416	.	+	2	Parent=Os03t0448500-02
Chr03	irgsp1_rep	three_prime_UTR	19179417	19180642	.	+	.	Parent=Os03t0448500-02
Chr03	irgsp1_rep	mRNA	19178357	19181857	.	+	.	ID=Os03t0448500-03;Name=Os03t0448500-03;Locus_id=Os03g0448500;Note=Hypothetical gene.;Transcript_evidence=AK072002 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013098O03;Expression=AK072002;TENOR=Os03t0448500-03;KEGG=Os03t0448500-03
Chr03	irgsp1_rep	five_prime_UTR	19178357	19179659	.	+	.	Parent=Os03t0448500-03
Chr03	irgsp1_rep	CDS	19179660	19179905	.	+	0	Parent=Os03t0448500-03
Chr03	irgsp1_rep	three_prime_UTR	19179906	19181857	.	+	.	Parent=Os03t0448500-03
Chr03	irgsp1_rep	mRNA	19184047	19191279	.	-	.	ID=Os03t0448600-01;Name=Os03t0448600-01;Locus_id=Os03g0448600;Oryzabase Gene Symbol Synonym(s)=OsWD40-76;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK111867 (DDBJ%2C Best hit);ORF_evidence=B6UH61 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J033045C11;Oryzabase=10757;Expression=AK111867;TENOR=Os03t0448600-01;KEGG=Os03t0448600-01
Chr03	irgsp1_rep	five_prime_UTR	19191166	19191279	.	-	.	Parent=Os03t0448600-01
Chr03	irgsp1_rep	CDS	19191034	19191165	.	-	0	Parent=Os03t0448600-01
Chr03	irgsp1_rep	CDS	19190783	19190913	.	-	0	Parent=Os03t0448600-01
Chr03	irgsp1_rep	CDS	19189985	19190067	.	-	1	Parent=Os03t0448600-01
Chr03	irgsp1_rep	CDS	19188971	19189237	.	-	2	Parent=Os03t0448600-01
Chr03	irgsp1_rep	CDS	19188162	19188237	.	-	2	Parent=Os03t0448600-01
Chr03	irgsp1_rep	CDS	19184779	19184859	.	-	1	Parent=Os03t0448600-01
Chr03	irgsp1_rep	CDS	19184615	19184693	.	-	1	Parent=Os03t0448600-01
Chr03	irgsp1_rep	CDS	19184443	19184543	.	-	0	Parent=Os03t0448600-01
Chr03	irgsp1_rep	CDS	19184255	19184336	.	-	1	Parent=Os03t0448600-01
Chr03	irgsp1_rep	three_prime_UTR	19184047	19184254	.	-	.	Parent=Os03t0448600-01
Chr03	irgsp1_rep	mRNA	19197638	19204054	.	-	.	ID=Os03t0448700-01;Name=Os03t0448700-01;Locus_id=Os03g0448700;Note=Interferon-related developmental regulator domain containing protein.;Transcript_evidence=AK102551 (DDBJ%2C Best hit);ORF_evidence=NP_001147680.1 (RefSeq);InterPro=Interferon-related developmental regulator%2C N-terminal (IPR007701);NIAS_FLcDNA=J033097C13;Expression=AK102551;TENOR=Os03t0448700-01;KEGG=Os03t0448700-01
Chr03	irgsp1_rep	five_prime_UTR	19203841	19204054	.	-	.	Parent=Os03t0448700-01
Chr03	irgsp1_rep	CDS	19203831	19203840	.	-	0	Parent=Os03t0448700-01
Chr03	irgsp1_rep	CDS	19203549	19203741	.	-	2	Parent=Os03t0448700-01
Chr03	irgsp1_rep	CDS	19202002	19202082	.	-	1	Parent=Os03t0448700-01
Chr03	irgsp1_rep	CDS	19201388	19201470	.	-	1	Parent=Os03t0448700-01
Chr03	irgsp1_rep	CDS	19201174	19201289	.	-	2	Parent=Os03t0448700-01
Chr03	irgsp1_rep	CDS	19200984	19201094	.	-	0	Parent=Os03t0448700-01
Chr03	irgsp1_rep	CDS	19200774	19200886	.	-	0	Parent=Os03t0448700-01
Chr03	irgsp1_rep	CDS	19200384	19200690	.	-	1	Parent=Os03t0448700-01
Chr03	irgsp1_rep	CDS	19200219	19200302	.	-	0	Parent=Os03t0448700-01
Chr03	irgsp1_rep	CDS	19200087	19200137	.	-	0	Parent=Os03t0448700-01
Chr03	irgsp1_rep	CDS	19199922	19199993	.	-	0	Parent=Os03t0448700-01
Chr03	irgsp1_rep	CDS	19198150	19198218	.	-	0	Parent=Os03t0448700-01
Chr03	irgsp1_rep	CDS	19197843	19197875	.	-	0	Parent=Os03t0448700-01
Chr03	irgsp1_rep	three_prime_UTR	19197638	19197842	.	-	.	Parent=Os03t0448700-01
Chr03	irgsp1_rep	mRNA	19243920	19248524	.	-	.	ID=Os03t0448950-01;Name=Os03t0448950-01;Locus_id=Os03g0448950;Note=Hypothetical gene.;Transcript_evidence=AK240838 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065016C10;TENOR=Os03t0448950-01;KEGG=Os03t0448950-01
Chr03	irgsp1_rep	five_prime_UTR	19246734	19248524	.	-	.	Parent=Os03t0448950-01
Chr03	irgsp1_rep	five_prime_UTR	19246632	19246639	.	-	.	Parent=Os03t0448950-01
Chr03	irgsp1_rep	CDS	19246173	19246631	.	-	0	Parent=Os03t0448950-01
Chr03	irgsp1_rep	three_prime_UTR	19245385	19246172	.	-	.	Parent=Os03t0448950-01
Chr03	irgsp1_rep	three_prime_UTR	19243920	19244558	.	-	.	Parent=Os03t0448950-01
Chr03	irgsp1_rep	mRNA	19244015	19248324	.	+	.	ID=Os03t0449200-00;Name=Os03t0449200-00;Locus_id=Os03g0449200;CGSNL Gene Symbol=SHL4;CGSNL Gene Name=SHOOTLESS 4;Oryzabase Gene Symbol Synonym(s)=shl4%2C sh4%2C OsAGO7%2C SHO2%2C AGO7%2C SHL4/SHO2;Oryzabase Gene Name Synonym(s)=shootless 4%2C shootless-4%2C Protein argonaute 7%2C Protein SHOOTLESS 4%2C Protein SHOOT ORGANIZATION 2%2C SHOOT ORGANIZATION2%2C ARGONAUTE 7%2C Argonaute 7;Note=Similar to Protein argonaute 7.;Transcript_evidence=AB353924 (DDBJ%2C Best hit);ORF_evidence=Q75HC2 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515);InterPro=Argonaute/Dicer protein%2C PAZ (IPR003100),Stem cell self-renewal protein Piwi (IPR003165),Ribonuclease H-like (IPR012337),Domain of unknown function DUF1785 (IPR014811);Oryzabase=978;TENOR=Os03t0449200-00;KEGG=Os03t0449200-00
Chr03	irgsp1_rep	five_prime_UTR	19244015	19244095	.	+	.	Parent=Os03t0449200-00
Chr03	irgsp1_rep	CDS	19244096	19244558	.	+	0	Parent=Os03t0449200-00
Chr03	irgsp1_rep	CDS	19245385	19246639	.	+	2	Parent=Os03t0449200-00
Chr03	irgsp1_rep	CDS	19246734	19248162	.	+	1	Parent=Os03t0449200-00
Chr03	irgsp1_rep	three_prime_UTR	19248163	19248324	.	+	.	Parent=Os03t0449200-00
Chr03	irgsp1_rep	mRNA	19413119	19417098	.	-	.	ID=Os03t0452300-01;Name=Os03t0452300-01;Locus_id=Os03g0452300;Note=Ribosomal protein S5%2C bacterial-type domain containing protein.;Transcript_evidence=AK060924 (DDBJ%2C Best hit),AK065820 (DDBJ%2C Best hit),AK119178 (DDBJ%2C Best hit);ORF_evidence=Q10IJ6 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: small ribosomal subunit (GO:0015935),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S5 (IPR000851),Ribosomal protein S5%2C C-terminal (IPR005324),Ribosomal protein S5%2C bacterial-type (IPR005712),Ribosomal protein S5%2C N-terminal (IPR013810),Double-stranded RNA-binding-like (IPR014720),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Ribosomal protein S5%2C N-terminal%2C conserved site (IPR018192),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=001-035-H10,J013042D13,001-037-G07;Expression=AK060924;TENOR=Os03t0452300-01;KEGG=Os03t0452300-01
Chr03	irgsp1_rep	five_prime_UTR	19417039	19417098	.	-	.	Parent=Os03t0452300-01
Chr03	irgsp1_rep	CDS	19416308	19417038	.	-	0	Parent=Os03t0452300-01
Chr03	irgsp1_rep	CDS	19413280	19413529	.	-	1	Parent=Os03t0452300-01
Chr03	irgsp1_rep	three_prime_UTR	19413119	19413279	.	-	.	Parent=Os03t0452300-01
Chr03	irgsp1_rep	mRNA	19413235	19413532	.	+	.	ID=Os03t0452801-00;Name=Os03t0452801-00;Locus_id=Os03g0452801;Note=Non-protein coding transcript.;Transcript_evidence=BT019227 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0452801-00
Chr03	irgsp1_rep	exon	19413235	19413532	.	+	.	Parent=Os03t0452801-00
Chr03	irgsp1_rep	mRNA	19423584	19428439	.	-	.	ID=Os03t0453301-01;Name=Os03t0453301-01;Locus_id=Os03g0453301;Note=Conserved hypothetical protein.;Transcript_evidence=AK288750 (DDBJ%2C Best hit);ORF_evidence=Q8W2S4 (UniProt);NIAS_FLcDNA=J090065D04;TENOR=Os03t0453301-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	19428082	19428439	.	-	.	Parent=Os03t0453301-01
Chr03	irgsp1_rep	CDS	19427755	19428081	.	-	0	Parent=Os03t0453301-01
Chr03	irgsp1_rep	three_prime_UTR	19423584	19427754	.	-	.	Parent=Os03t0453301-01
Chr03	irgsp1_rep	mRNA	19511706	19515403	.	+	.	ID=Os03t0453800-01;Name=Os03t0453800-01;Locus_id=Os03g0453800;Note=Conserved hypothetical protein.;Transcript_evidence=AK063623 (DDBJ%2C Best hit);ORF_evidence=B9F991 (UniProt);NIAS_FLcDNA=001-118-E09;Expression=AK063623;TENOR=Os03t0453800-01;KEGG=Os03t0453800-01
Chr03	irgsp1_rep	five_prime_UTR	19511706	19511974	.	+	.	Parent=Os03t0453800-01
Chr03	irgsp1_rep	CDS	19511975	19512187	.	+	0	Parent=Os03t0453800-01
Chr03	irgsp1_rep	CDS	19513135	19513245	.	+	0	Parent=Os03t0453800-01
Chr03	irgsp1_rep	three_prime_UTR	19513246	19513389	.	+	.	Parent=Os03t0453800-01
Chr03	irgsp1_rep	three_prime_UTR	19515340	19515403	.	+	.	Parent=Os03t0453800-01
Chr03	irgsp1_rep	mRNA	19518897	19525900	.	-	.	ID=Os03t0454100-01;Name=Os03t0454100-01;Locus_id=Os03g0454100;Note=TMS membrane protein/tumour differentially expressed protein family protein.;Transcript_evidence=AK067011 (DDBJ%2C Best hit);ORF_evidence=XP_002882452.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=TMS membrane protein/tumour differentially expressed protein (IPR005016);NIAS_FLcDNA=J013093K20;Expression=AK067011;TENOR=Os03t0454100-01;KEGG=Os03t0454100-01
Chr03	irgsp1_rep	five_prime_UTR	19525862	19525900	.	-	.	Parent=Os03t0454100-01
Chr03	irgsp1_rep	CDS	19525678	19525861	.	-	0	Parent=Os03t0454100-01
Chr03	irgsp1_rep	CDS	19522366	19522605	.	-	2	Parent=Os03t0454100-01
Chr03	irgsp1_rep	CDS	19520921	19521032	.	-	2	Parent=Os03t0454100-01
Chr03	irgsp1_rep	CDS	19520660	19520834	.	-	1	Parent=Os03t0454100-01
Chr03	irgsp1_rep	CDS	19519479	19519719	.	-	0	Parent=Os03t0454100-01
Chr03	irgsp1_rep	CDS	19519098	19519399	.	-	2	Parent=Os03t0454100-01
Chr03	irgsp1_rep	three_prime_UTR	19518897	19519097	.	-	.	Parent=Os03t0454100-01
Chr03	irgsp1_rep	mRNA	19528081	19531668	.	+	.	ID=Os03t0454300-01;Name=Os03t0454300-01;Locus_id=Os03g0454300;Note=Conserved hypothetical protein.;Transcript_evidence=AK065333 (DDBJ%2C Best hit);ORF_evidence=Q84SR8 (UniProt);NIAS_FLcDNA=J013000P11;TENOR=Os03t0454300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	19528081	19529250	.	+	.	Parent=Os03t0454300-01
Chr03	irgsp1_rep	CDS	19529251	19529703	.	+	0	Parent=Os03t0454300-01
Chr03	irgsp1_rep	three_prime_UTR	19529704	19531069	.	+	.	Parent=Os03t0454300-01
Chr03	irgsp1_rep	three_prime_UTR	19531322	19531668	.	+	.	Parent=Os03t0454300-01
Chr03	irgsp1_rep	mRNA	19530983	19531652	.	+	.	ID=Os03t0454300-02;Name=Os03t0454300-02;Locus_id=Os03g0454300;Note=Non-protein coding transcript.;Transcript_evidence=AK062050 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-044-B03;TENOR=Os03t0454300-02
Chr03	irgsp1_rep	exon	19530983	19531069	.	+	.	Parent=Os03t0454300-02
Chr03	irgsp1_rep	exon	19531322	19531652	.	+	.	Parent=Os03t0454300-02
Chr03	irgsp1_rep	mRNA	19585967	19588337	.	-	.	ID=Os03t0554900-00;Name=Os03t0554900-00;Locus_id=Os03g0554900;Note=Hypothetical conserved gene.;Transcript_evidence=BT042185 (DDBJ);ORF_evidence=Q10IG0 (UniProt);TENOR=Os03t0554900-00;KEGG=Os03t0554900-00
Chr03	irgsp1_rep	CDS	19586976	19588337	.	-	0	Parent=Os03t0554900-00
Chr03	irgsp1_rep	CDS	19586136	19586879	.	-	0	Parent=Os03t0554900-00
Chr03	irgsp1_rep	CDS	19586030	19586074	.	-	0	Parent=Os03t0554900-00
Chr03	irgsp1_rep	three_prime_UTR	19585967	19586029	.	-	.	Parent=Os03t0554900-00
Chr03	irgsp1_rep	mRNA	19596232	19599523	.	-	.	ID=Os03t0554950-00;Name=Os03t0554950-00;Locus_id=Os03g0554950;Note=Hypothetical conserved gene.;Transcript_evidence=EU942530 (DDBJ);ORF_evidence=B9F996 (UniProt);TENOR=Os03t0554950-00;KEGG=Os03t0554950-00
Chr03	irgsp1_rep	CDS	19599266	19599523	.	-	0	Parent=Os03t0554950-00
Chr03	irgsp1_rep	CDS	19598957	19599139	.	-	0	Parent=Os03t0554950-00
Chr03	irgsp1_rep	CDS	19596625	19596766	.	-	0	Parent=Os03t0554950-00
Chr03	irgsp1_rep	CDS	19596232	19596545	.	-	2	Parent=Os03t0554950-00
Chr03	irgsp1_rep	mRNA	19715826	19717599	.	-	.	ID=Os03t0556200-01;Name=Os03t0556200-01;Locus_id=Os03g0556200;Note=Hypothetical gene.;Transcript_evidence=AK062920 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-108-H06;Expression=AK062920;TENOR=Os03t0556200-01;KEGG=Os03t0556200-01
Chr03	irgsp1_rep	five_prime_UTR	19717599	19717599	.	-	.	Parent=Os03t0556200-01
Chr03	irgsp1_rep	CDS	19717371	19717598	.	-	0	Parent=Os03t0556200-01
Chr03	irgsp1_rep	CDS	19717037	19717060	.	-	0	Parent=Os03t0556200-01
Chr03	irgsp1_rep	three_prime_UTR	19716859	19717036	.	-	.	Parent=Os03t0556200-01
Chr03	irgsp1_rep	three_prime_UTR	19715826	19716287	.	-	.	Parent=Os03t0556200-01
Chr03	irgsp1_rep	mRNA	19726675	19728277	.	-	.	ID=Os03t0556500-01;Name=Os03t0556500-01;Locus_id=Os03g0556500;Note=Hypothetical protein.;Transcript_evidence=AK107364 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-127-A09;TENOR=Os03t0556500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	19727201	19728277	.	-	0	Parent=Os03t0556500-01
Chr03	irgsp1_rep	three_prime_UTR	19726675	19727200	.	-	.	Parent=Os03t0556500-01
Chr03	irgsp1_rep	mRNA	19726886	19731136	.	+	.	ID=Os03t0556600-01;Name=Os03t0556600-01;Locus_id=Os03g0556600;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK066162 (DDBJ%2C Best hit);ORF_evidence=A2XII0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Serine-threonine/tyrosine-protein kinase (IPR001245),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),S-receptor-like serine/threonine-protein kinase (IPR024171);NIAS_FLcDNA=J013053H05;Expression=AK066162;TENOR=Os03t0556600-01;KEGG=Os03t0556600-01
Chr03	irgsp1_rep	five_prime_UTR	19726886	19726984	.	+	.	Parent=Os03t0556600-01
Chr03	irgsp1_rep	CDS	19726985	19728275	.	+	0	Parent=Os03t0556600-01
Chr03	irgsp1_rep	CDS	19729199	19729611	.	+	2	Parent=Os03t0556600-01
Chr03	irgsp1_rep	CDS	19729726	19729936	.	+	0	Parent=Os03t0556600-01
Chr03	irgsp1_rep	CDS	19730037	19730274	.	+	2	Parent=Os03t0556600-01
Chr03	irgsp1_rep	CDS	19730353	19730503	.	+	1	Parent=Os03t0556600-01
Chr03	irgsp1_rep	CDS	19730746	19731048	.	+	0	Parent=Os03t0556600-01
Chr03	irgsp1_rep	three_prime_UTR	19731049	19731136	.	+	.	Parent=Os03t0556600-01
Chr03	irgsp1_rep	mRNA	19742753	19746906	.	+	.	ID=Os03t0557900-00;Name=Os03t0557900-00;Locus_id=Os03g0557900;Note=Hypothetical gene.;Transcript_evidence=AK240840 (DDBJ%2C Secondary hit);ORF_evidence=NP_001176877.1 (RefSeq);TENOR=Os03t0557900-00
Chr03	irgsp1_rep	five_prime_UTR	19742753	19742915	.	+	.	Parent=Os03t0557900-00
Chr03	irgsp1_rep	CDS	19742916	19743207	.	+	0	Parent=Os03t0557900-00
Chr03	irgsp1_rep	CDS	19743297	19743361	.	+	2	Parent=Os03t0557900-00
Chr03	irgsp1_rep	three_prime_UTR	19743362	19743396	.	+	.	Parent=Os03t0557900-00
Chr03	irgsp1_rep	three_prime_UTR	19745261	19745314	.	+	.	Parent=Os03t0557900-00
Chr03	irgsp1_rep	three_prime_UTR	19746654	19746906	.	+	.	Parent=Os03t0557900-00
Chr03	irgsp1_rep	mRNA	19903997	19908557	.	-	.	ID=Os03t0558400-01;Name=Os03t0558400-01;Locus_id=Os03g0558400;Note=Conserved hypothetical protein.;Transcript_evidence=AK070922 (DDBJ%2C Best hit);ORF_evidence=Q94H28 (UniProt);NIAS_FLcDNA=J023074K09;TENOR=Os03t0558400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	19908172	19908557	.	-	.	Parent=Os03t0558400-01
Chr03	irgsp1_rep	five_prime_UTR	19904362	19907961	.	-	.	Parent=Os03t0558400-01
Chr03	irgsp1_rep	CDS	19904143	19904361	.	-	0	Parent=Os03t0558400-01
Chr03	irgsp1_rep	three_prime_UTR	19903997	19904142	.	-	.	Parent=Os03t0558400-01
Chr03	irgsp1_rep	mRNA	19904294	19905198	.	+	.	ID=Os03t0558600-01;Name=Os03t0558600-01;Locus_id=Os03g0558600;Note=Similar to H0124E07.4 protein.;Transcript_evidence=AK240764 (DDBJ%2C Best hit);ORF_evidence=Q25AH9 (UniProt);NIAS_FLcDNA=J053056L05;TENOR=Os03t0558600-01;KEGG=Os03t0558600-01
Chr03	irgsp1_rep	five_prime_UTR	19904294	19904438	.	+	.	Parent=Os03t0558600-01
Chr03	irgsp1_rep	CDS	19904439	19904810	.	+	0	Parent=Os03t0558600-01
Chr03	irgsp1_rep	CDS	19904900	19905007	.	+	0	Parent=Os03t0558600-01
Chr03	irgsp1_rep	three_prime_UTR	19905008	19905198	.	+	.	Parent=Os03t0558600-01
Chr03	irgsp1_rep	mRNA	19925378	19926319	.	-	.	ID=Os03t0558700-01;Name=Os03t0558700-01;Locus_id=Os03g0558700;Oryzabase Gene Name Synonym(s)=Expressed protein;Note=Conserved hypothetical protein.;Transcript_evidence=AK108368 (DDBJ%2C Best hit);ORF_evidence=Q94H31 (UniProt);NIAS_FLcDNA=002-142-D05;Oryzabase=23614;Expression=AK108368;TENOR=Os03t0558700-01;KEGG=Os03t0558700-01
Chr03	irgsp1_rep	five_prime_UTR	19926319	19926319	.	-	.	Parent=Os03t0558700-01
Chr03	irgsp1_rep	CDS	19925617	19926318	.	-	0	Parent=Os03t0558700-01
Chr03	irgsp1_rep	three_prime_UTR	19925378	19925616	.	-	.	Parent=Os03t0558700-01
Chr03	irgsp1_rep	mRNA	20018827	20019659	.	-	.	ID=Os03t0559700-00;Name=Os03t0559700-00;Locus_id=Os03g0559700;Note=Conserved hypothetical protein.;Transcript_evidence=FP095167 (DDBJ);ORF_evidence=NP_001050485.1 (RefSeq);TENOR=Os03t0559700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	20019657	20019659	.	-	.	Parent=Os03t0559700-00
Chr03	irgsp1_rep	CDS	20018922	20019656	.	-	0	Parent=Os03t0559700-00
Chr03	irgsp1_rep	three_prime_UTR	20018827	20018921	.	-	.	Parent=Os03t0559700-00
Chr03	irgsp1_rep	mRNA	20030282	20033711	.	-	.	ID=Os03t0559900-01;Name=Os03t0559900-01;Locus_id=Os03g0559900;Note=Conserved hypothetical protein.;Transcript_evidence=AK101433 (DDBJ%2C Best hit);ORF_evidence=Q851B2 (UniProt);NIAS_FLcDNA=J033038L16;TENOR=Os03t0559900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	20033534	20033711	.	-	.	Parent=Os03t0559900-01
Chr03	irgsp1_rep	five_prime_UTR	20032769	20032868	.	-	.	Parent=Os03t0559900-01
Chr03	irgsp1_rep	CDS	20032723	20032768	.	-	0	Parent=Os03t0559900-01
Chr03	irgsp1_rep	CDS	20032476	20032547	.	-	2	Parent=Os03t0559900-01
Chr03	irgsp1_rep	CDS	20032124	20032380	.	-	2	Parent=Os03t0559900-01
Chr03	irgsp1_rep	CDS	20031984	20032046	.	-	0	Parent=Os03t0559900-01
Chr03	irgsp1_rep	three_prime_UTR	20031861	20031983	.	-	.	Parent=Os03t0559900-01
Chr03	irgsp1_rep	three_prime_UTR	20031693	20031785	.	-	.	Parent=Os03t0559900-01
Chr03	irgsp1_rep	three_prime_UTR	20030612	20031611	.	-	.	Parent=Os03t0559900-01
Chr03	irgsp1_rep	three_prime_UTR	20030282	20030518	.	-	.	Parent=Os03t0559900-01
Chr03	irgsp1_rep	mRNA	20030272	20033667	.	-	.	ID=Os03t0559900-02;Name=Os03t0559900-02;Locus_id=Os03g0559900;Note=Conserved hypothetical protein.;Transcript_evidence=AK107428 (DDBJ%2C Best hit);ORF_evidence=NP_001047078.2 (RefSeq);NIAS_FLcDNA=002-128-A04;TENOR=Os03t0559900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	20033534	20033667	.	-	.	Parent=Os03t0559900-02
Chr03	irgsp1_rep	five_prime_UTR	20032723	20032868	.	-	.	Parent=Os03t0559900-02
Chr03	irgsp1_rep	five_prime_UTR	20032418	20032547	.	-	.	Parent=Os03t0559900-02
Chr03	irgsp1_rep	CDS	20032001	20032417	.	-	0	Parent=Os03t0559900-02
Chr03	irgsp1_rep	three_prime_UTR	20031861	20032000	.	-	.	Parent=Os03t0559900-02
Chr03	irgsp1_rep	three_prime_UTR	20031693	20031785	.	-	.	Parent=Os03t0559900-02
Chr03	irgsp1_rep	three_prime_UTR	20031289	20031611	.	-	.	Parent=Os03t0559900-02
Chr03	irgsp1_rep	three_prime_UTR	20030612	20030668	.	-	.	Parent=Os03t0559900-02
Chr03	irgsp1_rep	three_prime_UTR	20030272	20030518	.	-	.	Parent=Os03t0559900-02
Chr03	irgsp1_rep	mRNA	20051758	20062367	.	-	.	ID=Os03t0560050-00;Name=Os03t0560050-00;Locus_id=Os03g0560050;Note=Hypothetical protein.;Transcript_evidence=BT087812 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0560050-00
Chr03	irgsp1_rep	five_prime_UTR	20062082	20062367	.	-	.	Parent=Os03t0560050-00
Chr03	irgsp1_rep	CDS	20061806	20062081	.	-	0	Parent=Os03t0560050-00
Chr03	irgsp1_rep	CDS	20051758	20051830	.	-	0	Parent=Os03t0560050-00
Chr03	irgsp1_rep	mRNA	20057603	20058345	.	-	.	ID=Os03t0560200-01;Name=Os03t0560200-01;Locus_id=Os03g0560200;Note=Similar to OSIGBa0092E01.11 protein.;Transcript_evidence=AK062706 (DDBJ%2C Best hit);ORF_evidence=Q01IC4 (UniProt);NIAS_FLcDNA=001-106-B08;Expression=AK062706;TENOR=Os03t0560200-01;KEGG=Os03t0560200-01
Chr03	irgsp1_rep	five_prime_UTR	20058206	20058345	.	-	.	Parent=Os03t0560200-01
Chr03	irgsp1_rep	CDS	20058005	20058205	.	-	0	Parent=Os03t0560200-01
Chr03	irgsp1_rep	CDS	20057862	20057882	.	-	0	Parent=Os03t0560200-01
Chr03	irgsp1_rep	three_prime_UTR	20057603	20057861	.	-	.	Parent=Os03t0560200-01
Chr03	irgsp1_rep	mRNA	20111568	20115720	.	-	.	ID=Os03t0561283-01;Name=Os03t0561283-01;Locus_id=Os03g0561283;Note=Conserved hypothetical protein.;Transcript_evidence=AK240840 (DDBJ%2C Best hit);ORF_evidence=NP_001173496.1 (RefSeq);NIAS_FLcDNA=J065016H04;TENOR=Os03t0561283-01
Chr03	irgsp1_rep	five_prime_UTR	20115555	20115720	.	-	.	Parent=Os03t0561283-01
Chr03	irgsp1_rep	CDS	20115263	20115554	.	-	0	Parent=Os03t0561283-01
Chr03	irgsp1_rep	CDS	20115117	20115181	.	-	2	Parent=Os03t0561283-01
Chr03	irgsp1_rep	three_prime_UTR	20115082	20115116	.	-	.	Parent=Os03t0561283-01
Chr03	irgsp1_rep	three_prime_UTR	20113147	20113203	.	-	.	Parent=Os03t0561283-01
Chr03	irgsp1_rep	three_prime_UTR	20111568	20111820	.	-	.	Parent=Os03t0561283-01
Chr03	irgsp1_rep	mRNA	20124488	20127262	.	-	.	ID=Os03t0561400-01;Name=Os03t0561400-01;Locus_id=Os03g0561400;Note=Conserved hypothetical protein.;Transcript_evidence=AK241103 (DDBJ%2C Best hit);ORF_evidence=NP_001173497.1 (RefSeq);NIAS_FLcDNA=J065079A13;TENOR=Os03t0561400-01
Chr03	irgsp1_rep	five_prime_UTR	20127213	20127262	.	-	.	Parent=Os03t0561400-01
Chr03	irgsp1_rep	CDS	20126919	20127212	.	-	0	Parent=Os03t0561400-01
Chr03	irgsp1_rep	three_prime_UTR	20124488	20126918	.	-	.	Parent=Os03t0561400-01
Chr03	irgsp1_rep	mRNA	20181736	20187927	.	-	.	ID=Os03t0562000-01;Name=Os03t0562000-01;Locus_id=Os03g0562000;Note=DNA-binding pseudobarrel domain domain containing protein.;Transcript_evidence=AK067072 (DDBJ%2C Best hit);ORF_evidence=B9F7K2 (UniProt);InterPro=DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=J013093H12;Expression=AK067072;TENOR=Os03t0562000-01;KEGG=Os03t0562000-01
Chr03	irgsp1_rep	five_prime_UTR	20187049	20187927	.	-	.	Parent=Os03t0562000-01
Chr03	irgsp1_rep	five_prime_UTR	20186762	20186912	.	-	.	Parent=Os03t0562000-01
Chr03	irgsp1_rep	five_prime_UTR	20186460	20186519	.	-	.	Parent=Os03t0562000-01
Chr03	irgsp1_rep	five_prime_UTR	20186082	20186199	.	-	.	Parent=Os03t0562000-01
Chr03	irgsp1_rep	five_prime_UTR	20185455	20185527	.	-	.	Parent=Os03t0562000-01
Chr03	irgsp1_rep	five_prime_UTR	20183655	20183719	.	-	.	Parent=Os03t0562000-01
Chr03	irgsp1_rep	five_prime_UTR	20183169	20183170	.	-	.	Parent=Os03t0562000-01
Chr03	irgsp1_rep	CDS	20183102	20183168	.	-	0	Parent=Os03t0562000-01
Chr03	irgsp1_rep	CDS	20182962	20183000	.	-	2	Parent=Os03t0562000-01
Chr03	irgsp1_rep	CDS	20182431	20182588	.	-	2	Parent=Os03t0562000-01
Chr03	irgsp1_rep	CDS	20182079	20182330	.	-	0	Parent=Os03t0562000-01
Chr03	irgsp1_rep	three_prime_UTR	20181736	20182078	.	-	.	Parent=Os03t0562000-01
Chr03	irgsp1_rep	mRNA	20188198	20194997	.	-	.	ID=Os03t0562200-01;Name=Os03t0562200-01;Locus_id=Os03g0562200;Oryzabase Gene Symbol Synonym(s)=OsFbox153;Oryzabase Gene Name Synonym(s)=F-box protein 153;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK072991 (DDBJ%2C Best hit);ORF_evidence=B6U5X4 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023147M15;Oryzabase=16942;Expression=AK072991;TENOR=Os03t0562200-01;KEGG=Os03t0562200-01
Chr03	irgsp1_rep	five_prime_UTR	20194958	20194997	.	-	.	Parent=Os03t0562200-01
Chr03	irgsp1_rep	CDS	20194578	20194957	.	-	0	Parent=Os03t0562200-01
Chr03	irgsp1_rep	CDS	20188446	20188983	.	-	1	Parent=Os03t0562200-01
Chr03	irgsp1_rep	three_prime_UTR	20188198	20188445	.	-	.	Parent=Os03t0562200-01
Chr03	irgsp1_rep	mRNA	20188178	20194964	.	-	.	ID=Os03t0562200-02;Name=Os03t0562200-02;Locus_id=Os03g0562200;Oryzabase Gene Symbol Synonym(s)=OsFbox153;Oryzabase Gene Name Synonym(s)=F-box protein 153;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK061175 (DDBJ%2C Best hit);ORF_evidence=B6U5X4 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=006-209-C04;Oryzabase=16942;TENOR=Os03t0562200-02
Chr03	irgsp1_rep	five_prime_UTR	20194958	20194964	.	-	.	Parent=Os03t0562200-02
Chr03	irgsp1_rep	CDS	20194578	20194957	.	-	0	Parent=Os03t0562200-02
Chr03	irgsp1_rep	CDS	20188446	20188983	.	-	1	Parent=Os03t0562200-02
Chr03	irgsp1_rep	three_prime_UTR	20188178	20188445	.	-	.	Parent=Os03t0562200-02
Chr03	irgsp1_rep	mRNA	20209967	20211819	.	-	.	ID=Os03t0562400-01;Name=Os03t0562400-01;Locus_id=Os03g0562400;Note=Conserved hypothetical protein.;Transcript_evidence=AK063408 (DDBJ%2C Best hit);ORF_evidence=Q5H9V9 (UniProt);NIAS_FLcDNA=001-115-A11;TENOR=Os03t0562400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	20210682	20211819	.	-	.	Parent=Os03t0562400-01
Chr03	irgsp1_rep	CDS	20210286	20210681	.	-	0	Parent=Os03t0562400-01
Chr03	irgsp1_rep	three_prime_UTR	20209967	20210285	.	-	.	Parent=Os03t0562400-01
Chr03	irgsp1_rep	mRNA	20240367	20243969	.	+	.	ID=Os03t0563100-01;Name=Os03t0563100-01;Locus_id=Os03g0563100;Note=D-arabinono-1%2C4-lactone oxidase domain containing protein.;Transcript_evidence=AK109527 (DDBJ%2C Best hit);ORF_evidence=NP_001152512.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: D-arabinono-1%2C4-lactone oxidase activity (GO:0003885),Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=FAD linked oxidase%2C N-terminal (IPR006094),D-arabinono-1%2C4-lactone oxidase (IPR007173),Plant-specific FAD-dependent oxidoreductase (IPR010030),FAD-binding%2C type 2 (IPR016166),FAD-linked oxidase%2C FAD-binding%2C subdomain 2 (IPR016168);NIAS_FLcDNA=002-116-B07;Expression=AK109527;TENOR=Os03t0563100-01;KEGG=Os03t0563100-01
Chr03	irgsp1_rep	five_prime_UTR	20240367	20240373	.	+	.	Parent=Os03t0563100-01
Chr03	irgsp1_rep	CDS	20240374	20241093	.	+	0	Parent=Os03t0563100-01
Chr03	irgsp1_rep	CDS	20242773	20243867	.	+	0	Parent=Os03t0563100-01
Chr03	irgsp1_rep	three_prime_UTR	20243868	20243969	.	+	.	Parent=Os03t0563100-01
Chr03	irgsp1_rep	mRNA	20244628	20245176	.	+	.	ID=Os03t0563200-01;Name=Os03t0563200-01;Locus_id=Os03g0563200;Note=Hypothetical conserved gene.;Transcript_evidence=AK062665 (DDBJ%2C Best hit);ORF_evidence=Q10I63 (UniProt);NIAS_FLcDNA=001-105-F09;Expression=AK062665;TENOR=Os03t0563200-01;KEGG=Os03t0563200-01
Chr03	irgsp1_rep	five_prime_UTR	20244628	20244628	.	+	.	Parent=Os03t0563200-01
Chr03	irgsp1_rep	CDS	20244629	20244868	.	+	0	Parent=Os03t0563200-01
Chr03	irgsp1_rep	three_prime_UTR	20244869	20245176	.	+	.	Parent=Os03t0563200-01
Chr03	irgsp1_rep	mRNA	20248326	20250000	.	-	.	ID=Os03t0563300-01;Name=Os03t0563300-01;Locus_id=Os03g0563300;RAP-DB Gene Symbol Synonym(s)=ELL%2C OsCHLI;RAP-DB Gene Name Synonym(s)=etiolated leaf and lethal%2C Mg-chelatase I subunit;CGSNL Gene Symbol=ELL;CGSNL Gene Name=ETIOLATED LEAF AND LETHAL;Oryzabase Gene Symbol Synonym(s)=chlI%2C OsChlI%2C ChlI%2C CHLI%2C OsCHLI%2C OsCHLI/ELL;Oryzabase Gene Name Synonym(s)=Magnesium-chelatase subunit chlI%2C magnesium chelatase subunit ChlI%2C MgCh I subbing%2C Mg-chelatase I subunit%2C etiolated leaf and lethal;Note=Magnesium-chelatase subunit ChlI%2C Mg-chelatase I subunit%2C Chlorophyll biosynthesis%2C Chloroplast development;Transcript_evidence=AK060389,AK070720,AK071134,AK104435;ORF_evidence=Q53RM0;GO=Biological Process: chlorophyll biosynthetic process (GO:0015995),Molecular Function: ATP binding (GO:0005524),Molecular Function: magnesium chelatase activity (GO:0016851);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),Magnesium chelatase%2C ATPase subunit I (IPR011775),AAA+ ATPase domain (IPR003593),Magnesium chelatase ChlI domain (IPR000523);NIAS_FLcDNA=001-009-H01,J023056M13,J023078K03,006-208-D12;Manual Curation=October 10%2C 2018;Literature_PMID=22226678,16915519,DOI:10.1007/s11105-015-0889-3;Oryzabase=9609;Expression=AK060389;TENOR=Os03t0563300-01;KEGG=Os03t0563300-01 (EC:6.6.1.1);Subcellular location=chloroplast (GO:0009507)
Chr03	irgsp1_rep	five_prime_UTR	20249942	20250000	.	-	.	Parent=Os03t0563300-01
Chr03	irgsp1_rep	CDS	20249830	20249941	.	-	0	Parent=Os03t0563300-01
Chr03	irgsp1_rep	CDS	20249637	20249716	.	-	2	Parent=Os03t0563300-01
Chr03	irgsp1_rep	CDS	20248500	20249555	.	-	0	Parent=Os03t0563300-01
Chr03	irgsp1_rep	three_prime_UTR	20248326	20248499	.	-	.	Parent=Os03t0563300-01
Chr03	irgsp1_rep	mRNA	20257176	20259092	.	+	.	ID=Os03t0563400-00;Name=Os03t0563400-00;Locus_id=Os03g0563400;Note=Similar to HAT family dimerisation domain containing protein.;Transcript_evidence=BT033929 (DDBJ);ORF_evidence=Q53RM1 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Zinc finger%2C BED-type predicted (IPR003656),HAT dimerisation (IPR008906),Ribonuclease H-like (IPR012337);TENOR=Os03t0563400-00
Chr03	irgsp1_rep	CDS	20257176	20259092	.	+	0	Parent=Os03t0563400-00
Chr03	irgsp1_rep	mRNA	20264124	20269616	.	+	.	ID=Os03t0563600-01;Name=Os03t0563600-01;Locus_id=Os03g0563600;Oryzabase Gene Symbol Synonym(s)=prx49;Oryzabase Gene Name Synonym(s)=class III peroxidase 49;Note=Similar to Peroxidase 56 precursor (EC 1.11.1.7) (Atperox P56) (ATP33).;Transcript_evidence=AK122030 (DDBJ%2C Best hit);ORF_evidence=NP_001148726.1 (RefSeq);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J033112F15;Oryzabase=14575;Expression=AK122030;TENOR=Os03t0563600-01;KEGG=Os03t0563600-01 (EC:1.11.1.7)
Chr03	irgsp1_rep	five_prime_UTR	20264124	20264255	.	+	.	Parent=Os03t0563600-01
Chr03	irgsp1_rep	CDS	20264256	20264507	.	+	0	Parent=Os03t0563600-01
Chr03	irgsp1_rep	CDS	20265048	20265236	.	+	0	Parent=Os03t0563600-01
Chr03	irgsp1_rep	CDS	20265819	20266017	.	+	0	Parent=Os03t0563600-01
Chr03	irgsp1_rep	CDS	20268985	20269391	.	+	2	Parent=Os03t0563600-01
Chr03	irgsp1_rep	three_prime_UTR	20269392	20269616	.	+	.	Parent=Os03t0563600-01
Chr03	irgsp1_rep	mRNA	20313408	20318292	.	+	.	ID=Os03t0564200-01;Name=Os03t0564200-01;Locus_id=Os03g0564200;Note=Protein of unknown function DUF952 family protein.;Transcript_evidence=AK064634 (DDBJ%2C Best hit);ORF_evidence=Q10I53 (UniProt);InterPro=Protein of unknown function DUF952 (IPR009297);NIAS_FLcDNA=002-113-H10;Expression=AK064634;TENOR=Os03t0564200-01;KEGG=Os03t0564200-01
Chr03	irgsp1_rep	CDS	20313408	20313512	.	+	0	Parent=Os03t0564200-01
Chr03	irgsp1_rep	CDS	20316017	20316088	.	+	0	Parent=Os03t0564200-01
Chr03	irgsp1_rep	CDS	20317743	20317925	.	+	0	Parent=Os03t0564200-01
Chr03	irgsp1_rep	three_prime_UTR	20317926	20318292	.	+	.	Parent=Os03t0564200-01
Chr03	irgsp1_rep	mRNA	20324825	20325721	.	-	.	ID=Os03t0564600-01;Name=Os03t0564600-01;Locus_id=Os03g0564600;Oryzabase Gene Name Synonym(s)=uncharacterized receptor protein kinase;Note=Protein of unknown function DUF26 domain containing protein.;Transcript_evidence=AK108950 (DDBJ%2C Best hit);ORF_evidence=NP_001148207.1 (RefSeq);InterPro=Gnk2-homologous domain (IPR002902);NIAS_FLcDNA=002-153-C04;Oryzabase=23400;Expression=AK108950;TENOR=Os03t0564600-01;KEGG=Os03t0564600-01
Chr03	irgsp1_rep	five_prime_UTR	20325721	20325721	.	-	.	Parent=Os03t0564600-01
Chr03	irgsp1_rep	CDS	20324980	20325720	.	-	0	Parent=Os03t0564600-01
Chr03	irgsp1_rep	three_prime_UTR	20324825	20324979	.	-	.	Parent=Os03t0564600-01
Chr03	irgsp1_rep	mRNA	20343954	20344421	.	-	.	ID=Os03t0564800-00;Name=Os03t0564800-00;Locus_id=Os03g0564800;Note=Putative harbinger transposase-derived nuclease domain containing protein.;Transcript_evidence=AK373128 (DDBJ);ORF_evidence=GeneMark;GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Putative harbinger transposase-derived nuclease (IPR006912);TENOR=Os03t0564800-00
Chr03	irgsp1_rep	CDS	20344125	20344421	.	-	0	Parent=Os03t0564800-00
Chr03	irgsp1_rep	three_prime_UTR	20343954	20344124	.	-	.	Parent=Os03t0564800-00
Chr03	irgsp1_rep	mRNA	20363579	20370035	.	-	.	ID=Os03t0565100-01;Name=Os03t0565100-01;Locus_id=Os03g0565100;Note=OST3/OST6 family protein.;Transcript_evidence=AK102421 (DDBJ%2C Best hit),AK061364 (DDBJ%2C Best hit),AK109347 (DDBJ%2C Best hit);ORF_evidence=B4FSV8 (UniProt);InterPro=Magnesium transporter protein 1 (IPR006844),Oligosaccharyl transferase complex%2C subunit OST3/OST6 (IPR021149);NIAS_FLcDNA=J033093D18,006-304-D03,006-203-G06;Expression=AK102421;TENOR=Os03t0565100-01;KEGG=Os03t0565100-01
Chr03	irgsp1_rep	five_prime_UTR	20369999	20370035	.	-	.	Parent=Os03t0565100-01
Chr03	irgsp1_rep	CDS	20368988	20369998	.	-	0	Parent=Os03t0565100-01
Chr03	irgsp1_rep	three_prime_UTR	20368936	20368987	.	-	.	Parent=Os03t0565100-01
Chr03	irgsp1_rep	three_prime_UTR	20363579	20363875	.	-	.	Parent=Os03t0565100-01
Chr03	irgsp1_rep	mRNA	20379625	20387042	.	+	.	ID=Os03t0565200-01;Name=Os03t0565200-01;Locus_id=Os03g0565200;Note=Haloacid dehalogenase-like hydrolase domain containing protein.;Transcript_evidence=AK065884 (DDBJ%2C Best hit);ORF_evidence=B4FF48 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity (GO:0016787);InterPro=Haloacid dehalogenase-like hydrolase (IPR005834),HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 (IPR006402),HAD-like domain (IPR023214);NIAS_FLcDNA=J013043L06;Expression=AK065884;TENOR=Os03t0565200-01;KEGG=Os03t0565200-01
Chr03	irgsp1_rep	five_prime_UTR	20379625	20379657	.	+	.	Parent=Os03t0565200-01
Chr03	irgsp1_rep	CDS	20379658	20379975	.	+	0	Parent=Os03t0565200-01
Chr03	irgsp1_rep	CDS	20381102	20381172	.	+	0	Parent=Os03t0565200-01
Chr03	irgsp1_rep	CDS	20382436	20382594	.	+	1	Parent=Os03t0565200-01
Chr03	irgsp1_rep	CDS	20383105	20383171	.	+	1	Parent=Os03t0565200-01
Chr03	irgsp1_rep	CDS	20383420	20383515	.	+	0	Parent=Os03t0565200-01
Chr03	irgsp1_rep	CDS	20384194	20384240	.	+	0	Parent=Os03t0565200-01
Chr03	irgsp1_rep	CDS	20384620	20384700	.	+	1	Parent=Os03t0565200-01
Chr03	irgsp1_rep	CDS	20386695	20386818	.	+	1	Parent=Os03t0565200-01
Chr03	irgsp1_rep	three_prime_UTR	20386819	20387042	.	+	.	Parent=Os03t0565200-01
Chr03	irgsp1_rep	mRNA	20391546	20396525	.	+	.	ID=Os03t0565300-01;Name=Os03t0565300-01;Locus_id=Os03g0565300;Note=Protein of unknown function DUF1723 domain containing protein.;Transcript_evidence=AK072093 (DDBJ%2C Best hit);ORF_evidence=A3AJM2 (UniProt);InterPro=Aminotransferase-like%2C plant mobile domain (IPR019557);NIAS_FLcDNA=J013116B15;Expression=AK072093;TENOR=Os03t0565300-01;KEGG=Os03t0565300-01
Chr03	irgsp1_rep	five_prime_UTR	20391546	20391788	.	+	.	Parent=Os03t0565300-01
Chr03	irgsp1_rep	CDS	20391789	20394594	.	+	0	Parent=Os03t0565300-01
Chr03	irgsp1_rep	CDS	20394713	20394999	.	+	2	Parent=Os03t0565300-01
Chr03	irgsp1_rep	three_prime_UTR	20395000	20395027	.	+	.	Parent=Os03t0565300-01
Chr03	irgsp1_rep	three_prime_UTR	20395603	20395693	.	+	.	Parent=Os03t0565300-01
Chr03	irgsp1_rep	three_prime_UTR	20395820	20396525	.	+	.	Parent=Os03t0565300-01
Chr03	irgsp1_rep	mRNA	20403051	20417506	.	+	.	ID=Os03t0565500-01;Name=Os03t0565500-01;Locus_id=Os03g0565500;Oryzabase Gene Symbol Synonym(s)=mEF-G;Oryzabase Gene Name Synonym(s)=mitochondrial elongation factor G;Note=Similar to Elongation factor G 1%2C mitochondrial precursor (mEF-G-1) (EFGM).;Transcript_evidence=AK122133 (DDBJ%2C Best hit),AK102744 (DDBJ%2C Best hit);ORF_evidence=D0NCX8 (UniProt);GO=Biological Process: translational elongation (GO:0006414),Cellular Component: intracellular (GO:0005622),Molecular Function: translation elongation factor activity (GO:0003746),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Translation elongation factor EFG/EF2%2C C-terminal (IPR000640),Protein synthesis factor%2C GTP-binding (IPR000795),Translation elongation factor EFTu/EF1A%2C domain 2 (IPR004161),Translation elongation factor EFG/EF2 (IPR004540),Small GTP-binding protein domain (IPR005225),Translation elongation factor EFG/EF2%2C domain IV (IPR005517),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Elongation factor G/III/V (IPR009022),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=J033133F23,J033106I07;Oryzabase=15691;TENOR=Os03t0565500-01
Chr03	irgsp1_rep	five_prime_UTR	20403051	20403150	.	+	.	Parent=Os03t0565500-01
Chr03	irgsp1_rep	CDS	20403151	20403561	.	+	0	Parent=Os03t0565500-01
Chr03	irgsp1_rep	CDS	20404202	20404423	.	+	0	Parent=Os03t0565500-01
Chr03	irgsp1_rep	CDS	20405782	20405903	.	+	0	Parent=Os03t0565500-01
Chr03	irgsp1_rep	CDS	20405996	20406146	.	+	1	Parent=Os03t0565500-01
Chr03	irgsp1_rep	CDS	20407399	20407470	.	+	0	Parent=Os03t0565500-01
Chr03	irgsp1_rep	CDS	20407763	20407858	.	+	0	Parent=Os03t0565500-01
Chr03	irgsp1_rep	CDS	20408368	20408456	.	+	0	Parent=Os03t0565500-01
Chr03	irgsp1_rep	CDS	20408575	20408641	.	+	1	Parent=Os03t0565500-01
Chr03	irgsp1_rep	CDS	20409704	20409742	.	+	0	Parent=Os03t0565500-01
Chr03	irgsp1_rep	CDS	20409876	20409936	.	+	0	Parent=Os03t0565500-01
Chr03	irgsp1_rep	CDS	20410079	20410188	.	+	2	Parent=Os03t0565500-01
Chr03	irgsp1_rep	CDS	20410273	20410347	.	+	0	Parent=Os03t0565500-01
Chr03	irgsp1_rep	CDS	20410421	20410489	.	+	0	Parent=Os03t0565500-01
Chr03	irgsp1_rep	CDS	20412633	20412754	.	+	0	Parent=Os03t0565500-01
Chr03	irgsp1_rep	CDS	20414189	20414314	.	+	1	Parent=Os03t0565500-01
Chr03	irgsp1_rep	CDS	20414404	20414524	.	+	1	Parent=Os03t0565500-01
Chr03	irgsp1_rep	CDS	20414640	20414740	.	+	0	Parent=Os03t0565500-01
Chr03	irgsp1_rep	CDS	20415071	20415131	.	+	1	Parent=Os03t0565500-01
Chr03	irgsp1_rep	CDS	20416067	20416120	.	+	0	Parent=Os03t0565500-01
Chr03	irgsp1_rep	CDS	20417092	20417196	.	+	0	Parent=Os03t0565500-01
Chr03	irgsp1_rep	three_prime_UTR	20417197	20417506	.	+	.	Parent=Os03t0565500-01
Chr03	irgsp1_rep	mRNA	20420795	20426307	.	-	.	ID=Os03t0565600-01;Name=Os03t0565600-01;Locus_id=Os03g0565600;Note=Similar to tobamovirus multiplication-like protein.;Transcript_evidence=AK068863 (DDBJ%2C Best hit);ORF_evidence=NP_001149396.1 (RefSeq);InterPro=Domain of unknown function DUF1084 (IPR009457);NIAS_FLcDNA=J013170P13;TENOR=Os03t0565600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	20426158	20426307	.	-	.	Parent=Os03t0565600-01
Chr03	irgsp1_rep	CDS	20425966	20426157	.	-	0	Parent=Os03t0565600-01
Chr03	irgsp1_rep	CDS	20423656	20423746	.	-	0	Parent=Os03t0565600-01
Chr03	irgsp1_rep	CDS	20423530	20423582	.	-	2	Parent=Os03t0565600-01
Chr03	irgsp1_rep	CDS	20423212	20423304	.	-	0	Parent=Os03t0565600-01
Chr03	irgsp1_rep	CDS	20423037	20423108	.	-	0	Parent=Os03t0565600-01
Chr03	irgsp1_rep	CDS	20422556	20422628	.	-	0	Parent=Os03t0565600-01
Chr03	irgsp1_rep	CDS	20422422	20422467	.	-	2	Parent=Os03t0565600-01
Chr03	irgsp1_rep	CDS	20422273	20422336	.	-	1	Parent=Os03t0565600-01
Chr03	irgsp1_rep	CDS	20421863	20421961	.	-	0	Parent=Os03t0565600-01
Chr03	irgsp1_rep	three_prime_UTR	20421222	20421862	.	-	.	Parent=Os03t0565600-01
Chr03	irgsp1_rep	three_prime_UTR	20420795	20421148	.	-	.	Parent=Os03t0565600-01
Chr03	irgsp1_rep	mRNA	20436527	20437847	.	+	.	ID=Os03t0565825-00;Name=Os03t0565825-00;Locus_id=Os03g0565825;Note=Conserved hypothetical protein.;Transcript_evidence=EU955901 (DDBJ);ORF_evidence=Q6ZDL1 (UniProt);TENOR=Os03t0565825-00
Chr03	irgsp1_rep	five_prime_UTR	20436527	20436575	.	+	.	Parent=Os03t0565825-00
Chr03	irgsp1_rep	five_prime_UTR	20436708	20436790	.	+	.	Parent=Os03t0565825-00
Chr03	irgsp1_rep	five_prime_UTR	20436881	20436937	.	+	.	Parent=Os03t0565825-00
Chr03	irgsp1_rep	CDS	20436938	20437047	.	+	0	Parent=Os03t0565825-00
Chr03	irgsp1_rep	CDS	20437359	20437407	.	+	1	Parent=Os03t0565825-00
Chr03	irgsp1_rep	three_prime_UTR	20437408	20437465	.	+	.	Parent=Os03t0565825-00
Chr03	irgsp1_rep	three_prime_UTR	20437700	20437847	.	+	.	Parent=Os03t0565825-00
Chr03	irgsp1_rep	mRNA	20444173	20447271	.	-	.	ID=Os03t0565900-01;Name=Os03t0565900-01;Locus_id=Os03g0565900;Note=Protein of unknown function DUF1723 domain containing protein.;Transcript_evidence=AK100587 (DDBJ%2C Best hit);ORF_evidence=A2XIM5 (UniProt);InterPro=Aminotransferase-like%2C plant mobile domain (IPR019557);NIAS_FLcDNA=J023106C19;Expression=AK100587;TENOR=Os03t0565900-01;KEGG=Os03t0565900-01
Chr03	irgsp1_rep	five_prime_UTR	20447208	20447271	.	-	.	Parent=Os03t0565900-01
Chr03	irgsp1_rep	CDS	20445831	20447207	.	-	0	Parent=Os03t0565900-01
Chr03	irgsp1_rep	three_prime_UTR	20444949	20445830	.	-	.	Parent=Os03t0565900-01
Chr03	irgsp1_rep	three_prime_UTR	20444173	20444710	.	-	.	Parent=Os03t0565900-01
Chr03	irgsp1_rep	mRNA	20476624	20480558	.	-	.	ID=Os03t0566500-01;Name=Os03t0566500-01;Locus_id=Os03g0566500;Note=Lupus La protein family protein.;Transcript_evidence=AK070576 (DDBJ%2C Best hit);ORF_evidence=B8AKV5 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Cellular Component: nucleus (GO:0005634),Cellular Component: ribonucleoprotein complex (GO:0030529),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723);InterPro=RNA recognition motif domain (IPR000504),Lupus La protein (IPR002344),RNA-binding protein Lupus La (IPR006630),Ataxin-2%2C C-terminal (IPR009818),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023057E01;Expression=AK070576;TENOR=Os03t0566500-01;KEGG=Os03t0566500-01
Chr03	irgsp1_rep	five_prime_UTR	20480471	20480558	.	-	.	Parent=Os03t0566500-01
Chr03	irgsp1_rep	CDS	20480111	20480470	.	-	0	Parent=Os03t0566500-01
Chr03	irgsp1_rep	CDS	20479903	20479984	.	-	0	Parent=Os03t0566500-01
Chr03	irgsp1_rep	CDS	20478419	20478513	.	-	2	Parent=Os03t0566500-01
Chr03	irgsp1_rep	CDS	20478271	20478342	.	-	0	Parent=Os03t0566500-01
Chr03	irgsp1_rep	CDS	20478090	20478169	.	-	0	Parent=Os03t0566500-01
Chr03	irgsp1_rep	CDS	20477920	20478001	.	-	1	Parent=Os03t0566500-01
Chr03	irgsp1_rep	CDS	20477740	20477787	.	-	0	Parent=Os03t0566500-01
Chr03	irgsp1_rep	CDS	20477592	20477660	.	-	0	Parent=Os03t0566500-01
Chr03	irgsp1_rep	CDS	20477177	20477302	.	-	0	Parent=Os03t0566500-01
Chr03	irgsp1_rep	CDS	20476825	20477100	.	-	0	Parent=Os03t0566500-01
Chr03	irgsp1_rep	three_prime_UTR	20476624	20476824	.	-	.	Parent=Os03t0566500-01
Chr03	irgsp1_rep	mRNA	20484942	20487487	.	+	.	ID=Os03t0566600-01;Name=Os03t0566600-01;Locus_id=Os03g0566600;Note=Methyltransferase FkbM domain containing protein.;Transcript_evidence=AK063379 (DDBJ%2C Best hit);ORF_evidence=B6UA74 (UniProt);InterPro=Methyltransferase FkbM (IPR006342);NIAS_FLcDNA=001-114-F07;Expression=AK063379;TENOR=Os03t0566600-01;KEGG=Os03t0566600-01
Chr03	irgsp1_rep	five_prime_UTR	20484942	20484981	.	+	.	Parent=Os03t0566600-01
Chr03	irgsp1_rep	CDS	20484982	20485599	.	+	0	Parent=Os03t0566600-01
Chr03	irgsp1_rep	CDS	20486988	20487347	.	+	0	Parent=Os03t0566600-01
Chr03	irgsp1_rep	three_prime_UTR	20487348	20487487	.	+	.	Parent=Os03t0566600-01
Chr03	irgsp1_rep	mRNA	20485905	20488547	.	-	.	ID=Os03t0566700-01;Name=Os03t0566700-01;Locus_id=Os03g0566700;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=AK288551 (DDBJ%2C Best hit);ORF_evidence=NP_001173500.1 (RefSeq);NIAS_FLcDNA=J090046N06;TENOR=Os03t0566700-01;KEGG=Os03t0566700-01
Chr03	irgsp1_rep	CDS	20487963	20488547	.	-	0	Parent=Os03t0566700-01
Chr03	irgsp1_rep	three_prime_UTR	20485905	20487962	.	-	.	Parent=Os03t0566700-01
Chr03	irgsp1_rep	mRNA	20492421	20496890	.	-	.	ID=Os03t0566800-01;Name=Os03t0566800-01;Locus_id=Os03g0566800;RAP-DB Gene Symbol Synonym(s)=OsRH34;RAP-DB Gene Name Synonym(s)=RNA helicase 34;Oryzabase Gene Symbol Synonym(s)=OsRH34%2C RH34;Oryzabase Gene Name Synonym(s)=RNA helicase 34;Note=DEAD box RNA helicase homologous to eukaryotic initiation factor 4AIII (eIF4AIII)%2C Core components of the exon junction complex (EJC)%2C Regulation of plant height%2C pollen%2C and seed development;Transcript_evidence=AK103270;ORF_evidence=Q10I26;GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: ATP binding (GO:0005524);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014),Helicase superfamily 1/2%2C ATP-binding domain (IPR014001),DEAD/DEAH box helicase domain (IPR011545),Helicase%2C C-terminal (IPR001650),ATP-dependent RNA helicase DEAD-box%2C conserved site (IPR000629);NIAS_FLcDNA=J033124H10;Manual Curation=April 19%2C 2016;Literature_PMID=27071313;Oryzabase=19143;Expression=AK103270;TENOR=Os03t0566800-01;KEGG=Os03t0566800-01 (EC:3.6.4.13)
Chr03	irgsp1_rep	five_prime_UTR	20496813	20496890	.	-	.	Parent=Os03t0566800-01
Chr03	irgsp1_rep	CDS	20496517	20496812	.	-	0	Parent=Os03t0566800-01
Chr03	irgsp1_rep	CDS	20495723	20495963	.	-	1	Parent=Os03t0566800-01
Chr03	irgsp1_rep	CDS	20495560	20495640	.	-	0	Parent=Os03t0566800-01
Chr03	irgsp1_rep	CDS	20494743	20494850	.	-	0	Parent=Os03t0566800-01
Chr03	irgsp1_rep	CDS	20494516	20494635	.	-	0	Parent=Os03t0566800-01
Chr03	irgsp1_rep	CDS	20493609	20493777	.	-	0	Parent=Os03t0566800-01
Chr03	irgsp1_rep	CDS	20493445	20493530	.	-	2	Parent=Os03t0566800-01
Chr03	irgsp1_rep	CDS	20492704	20492817	.	-	0	Parent=Os03t0566800-01
Chr03	irgsp1_rep	three_prime_UTR	20492421	20492703	.	-	.	Parent=Os03t0566800-01
Chr03	irgsp1_rep	mRNA	20501326	20501926	.	-	.	ID=Os03t0567100-01;Name=Os03t0567100-01;Locus_id=Os03g0567100;Note=Conserved hypothetical protein.;Transcript_evidence=AK109220 (DDBJ%2C Best hit);ORF_evidence=Q94LC4 (UniProt);NIAS_FLcDNA=002-156-E04;Expression=AK109220;TENOR=Os03t0567100-01;KEGG=Os03t0567100-01
Chr03	irgsp1_rep	five_prime_UTR	20501878	20501926	.	-	.	Parent=Os03t0567100-01
Chr03	irgsp1_rep	CDS	20501530	20501877	.	-	0	Parent=Os03t0567100-01
Chr03	irgsp1_rep	three_prime_UTR	20501326	20501529	.	-	.	Parent=Os03t0567100-01
Chr03	irgsp1_rep	mRNA	20515443	20519238	.	-	.	ID=Os03t0567600-01;Name=Os03t0567600-01;Locus_id=Os03g0567600;CGSNL Gene Symbol=XAT3;CGSNL Gene Name=XYLAN ARABINOSYLTRANSFERASE 3;Oryzabase Gene Symbol Synonym(s)=OsXAT3;Oryzabase Gene Name Synonym(s)=xylan arabinosyltransferase3;Note=Glycosyltransferase AER61%2C uncharacterized domain containing protein.;Transcript_evidence=AK100305 (DDBJ%2C Best hit);ORF_evidence=Q5QPZ2 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyltransferase AER61%2C uncharacterised (IPR007657);NIAS_FLcDNA=J023078F15;Oryzabase=10258;Expression=AK100305;TENOR=Os03t0567600-01;KEGG=Os03t0567600-01
Chr03	irgsp1_rep	five_prime_UTR	20518398	20519238	.	-	.	Parent=Os03t0567600-01
Chr03	irgsp1_rep	CDS	20518253	20518397	.	-	0	Parent=Os03t0567600-01
Chr03	irgsp1_rep	CDS	20518043	20518147	.	-	2	Parent=Os03t0567600-01
Chr03	irgsp1_rep	CDS	20517889	20517936	.	-	2	Parent=Os03t0567600-01
Chr03	irgsp1_rep	CDS	20517604	20517729	.	-	2	Parent=Os03t0567600-01
Chr03	irgsp1_rep	CDS	20517293	20517433	.	-	2	Parent=Os03t0567600-01
Chr03	irgsp1_rep	CDS	20515691	20516856	.	-	2	Parent=Os03t0567600-01
Chr03	irgsp1_rep	three_prime_UTR	20515443	20515690	.	-	.	Parent=Os03t0567600-01
Chr03	irgsp1_rep	mRNA	20515545	20518445	.	-	.	ID=Os03t0567600-02;Name=Os03t0567600-02;Locus_id=Os03g0567600;CGSNL Gene Symbol=XAT3;CGSNL Gene Name=XYLAN ARABINOSYLTRANSFERASE 3;Oryzabase Gene Symbol Synonym(s)=OsXAT3;Oryzabase Gene Name Synonym(s)=xylan arabinosyltransferase3;Note=Glycosyltransferase AER61%2C uncharacterized domain containing protein.;Transcript_evidence=AK098896 (DDBJ%2C Best hit),AK065135 (DDBJ%2C Best hit);ORF_evidence=Q5QPZ2 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyltransferase AER61%2C uncharacterised (IPR007657);NIAS_FLcDNA=J013002A01,J013002A03;Oryzabase=10258;TENOR=Os03t0567600-02
Chr03	irgsp1_rep	five_prime_UTR	20518398	20518445	.	-	.	Parent=Os03t0567600-02
Chr03	irgsp1_rep	CDS	20518253	20518397	.	-	0	Parent=Os03t0567600-02
Chr03	irgsp1_rep	CDS	20518043	20518147	.	-	2	Parent=Os03t0567600-02
Chr03	irgsp1_rep	CDS	20517889	20517936	.	-	2	Parent=Os03t0567600-02
Chr03	irgsp1_rep	CDS	20517604	20517729	.	-	2	Parent=Os03t0567600-02
Chr03	irgsp1_rep	CDS	20517293	20517433	.	-	2	Parent=Os03t0567600-02
Chr03	irgsp1_rep	CDS	20515691	20516856	.	-	2	Parent=Os03t0567600-02
Chr03	irgsp1_rep	three_prime_UTR	20515545	20515690	.	-	.	Parent=Os03t0567600-02
Chr03	irgsp1_rep	mRNA	20515441	20517401	.	-	.	ID=Os03t0567600-03;Name=Os03t0567600-03;Locus_id=Os03g0567600;CGSNL Gene Symbol=XAT3;CGSNL Gene Name=XYLAN ARABINOSYLTRANSFERASE 3;Oryzabase Gene Symbol Synonym(s)=OsXAT3;Oryzabase Gene Name Synonym(s)=xylan arabinosyltransferase3;Note=Similar to Glycosyltransferase.;Transcript_evidence=AK119180 (DDBJ%2C Best hit);ORF_evidence=Q5QPZ1 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyltransferase AER61%2C uncharacterised (IPR007657);NIAS_FLcDNA=001-037-G11;Oryzabase=10258;Expression=AK119180;TENOR=Os03t0567600-03;KEGG=Os03t0567600-03
Chr03	irgsp1_rep	CDS	20517293	20517401	.	-	0	Parent=Os03t0567600-03
Chr03	irgsp1_rep	CDS	20515691	20516856	.	-	2	Parent=Os03t0567600-03
Chr03	irgsp1_rep	three_prime_UTR	20515441	20515690	.	-	.	Parent=Os03t0567600-03
Chr03	irgsp1_rep	mRNA	20515592	20518411	.	+	.	ID=Os03t0568000-00;Name=Os03t0568000-00;Locus_id=Os03g0568000;Note=Hypothetical protein.;Transcript_evidence=tplb0061g13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0568000-00
Chr03	irgsp1_rep	five_prime_UTR	20515592	20515987	.	+	.	Parent=Os03t0568000-00
Chr03	irgsp1_rep	CDS	20515988	20516317	.	+	0	Parent=Os03t0568000-00
Chr03	irgsp1_rep	three_prime_UTR	20516318	20516905	.	+	.	Parent=Os03t0568000-00
Chr03	irgsp1_rep	three_prime_UTR	20517282	20517497	.	+	.	Parent=Os03t0568000-00
Chr03	irgsp1_rep	three_prime_UTR	20517974	20518149	.	+	.	Parent=Os03t0568000-00
Chr03	irgsp1_rep	three_prime_UTR	20518255	20518411	.	+	.	Parent=Os03t0568000-00
Chr03	irgsp1_rep	mRNA	20550499	20557987	.	+	.	ID=Os03t0568400-01;Name=Os03t0568400-01;Locus_id=Os03g0568400;RAP-DB Gene Name Synonym(s)=Cyt P450 71E1;CGSNL Gene Symbol=CYP71E1;CGSNL Gene Name=P450 71E1;Oryzabase Gene Symbol Synonym(s)=Cyt P450 71E1%2C OsCYP71E1;Oryzabase Gene Name Synonym(s)=CytoChrome P450 71E1;Note=CytoChrome P450;Transcript_evidence=BT040683 (maize);ORF_evidence=A0A0P0VZB6;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 superfamily (IPR036396),CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);Manual Curation=June 30%2C 2020;Literature_PMID=32586052;Oryzabase=23739;TENOR=Os03t0568400-00
Chr03	irgsp1_rep	five_prime_UTR	20550499	20550736	.	+	.	Parent=Os03t0568400-01
Chr03	irgsp1_rep	CDS	20550737	20550949	.	+	0	Parent=Os03t0568400-01
Chr03	irgsp1_rep	CDS	20556856	20557293	.	+	0	Parent=Os03t0568400-01
Chr03	irgsp1_rep	CDS	20557395	20557694	.	+	0	Parent=Os03t0568400-01
Chr03	irgsp1_rep	three_prime_UTR	20557695	20557987	.	+	.	Parent=Os03t0568400-01
Chr03	irgsp1_rep	mRNA	20558776	20561694	.	-	.	ID=Os03t0568500-01;Name=Os03t0568500-01;Locus_id=Os03g0568500;Note=Uncharacterised protein family UPF0136%2C Transmembrane domain containing protein.;Transcript_evidence=AK058939 (DDBJ%2C Best hit);ORF_evidence=Q9AYA9 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Uncharacterised protein family UPF0136%2C Transmembrane (IPR005349);NIAS_FLcDNA=001-009-G05;Expression=AK058939;TENOR=Os03t0568500-01;KEGG=Os03t0568500-01
Chr03	irgsp1_rep	five_prime_UTR	20561471	20561694	.	-	.	Parent=Os03t0568500-01
Chr03	irgsp1_rep	CDS	20561272	20561470	.	-	0	Parent=Os03t0568500-01
Chr03	irgsp1_rep	CDS	20559197	20559284	.	-	2	Parent=Os03t0568500-01
Chr03	irgsp1_rep	CDS	20558987	20559059	.	-	1	Parent=Os03t0568500-01
Chr03	irgsp1_rep	three_prime_UTR	20558776	20558986	.	-	.	Parent=Os03t0568500-01
Chr03	irgsp1_rep	mRNA	20563284	20564968	.	-	.	ID=Os03t0568550-00;Name=Os03t0568550-00;Locus_id=Os03g0568550;Note=Hypothetical protein.;Transcript_evidence=tplb0030d16 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0568550-00
Chr03	irgsp1_rep	five_prime_UTR	20563670	20564968	.	-	.	Parent=Os03t0568550-00
Chr03	irgsp1_rep	CDS	20563284	20563669	.	-	0	Parent=Os03t0568550-00
Chr03	irgsp1_rep	mRNA	20563322	20565064	.	+	.	ID=Os03t0568600-01;Name=Os03t0568600-01;Locus_id=Os03g0568600;Note=DTW domain containing protein.;Transcript_evidence=AK102228 (DDBJ%2C Best hit);ORF_evidence=NP_001151230.1 (RefSeq);InterPro=DTW (IPR005636);NIAS_FLcDNA=J033087P12;Expression=AK102228;TENOR=Os03t0568600-01;KEGG=Os03t0568600-01
Chr03	irgsp1_rep	five_prime_UTR	20563322	20563363	.	+	.	Parent=Os03t0568600-01
Chr03	irgsp1_rep	CDS	20563364	20564866	.	+	0	Parent=Os03t0568600-01
Chr03	irgsp1_rep	three_prime_UTR	20564867	20565064	.	+	.	Parent=Os03t0568600-01
Chr03	irgsp1_rep	mRNA	20569313	20572604	.	+	.	ID=Os03t0568800-01;Name=Os03t0568800-01;Locus_id=Os03g0568800;Oryzabase Gene Symbol Synonym(s)=RHS10;Oryzabase Gene Name Synonym(s)=rice RHS10 ortholog;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK070389 (DDBJ%2C Best hit);ORF_evidence=E5GBJ3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023048I16;Oryzabase=20950;Expression=AK070389;TENOR=Os03t0568800-01;KEGG=Os03t0568800-01
Chr03	irgsp1_rep	five_prime_UTR	20569313	20569592	.	+	.	Parent=Os03t0568800-01
Chr03	irgsp1_rep	CDS	20569593	20570484	.	+	0	Parent=Os03t0568800-01
Chr03	irgsp1_rep	CDS	20570569	20571048	.	+	2	Parent=Os03t0568800-01
Chr03	irgsp1_rep	CDS	20571168	20571238	.	+	2	Parent=Os03t0568800-01
Chr03	irgsp1_rep	CDS	20571343	20571419	.	+	0	Parent=Os03t0568800-01
Chr03	irgsp1_rep	CDS	20571583	20571730	.	+	1	Parent=Os03t0568800-01
Chr03	irgsp1_rep	CDS	20571853	20572014	.	+	0	Parent=Os03t0568800-01
Chr03	irgsp1_rep	CDS	20572250	20572447	.	+	0	Parent=Os03t0568800-01
Chr03	irgsp1_rep	three_prime_UTR	20572448	20572604	.	+	.	Parent=Os03t0568800-01
Chr03	irgsp1_rep	mRNA	20569386	20572604	.	+	.	ID=Os03t0568800-02;Name=Os03t0568800-02;Locus_id=Os03g0568800;Oryzabase Gene Symbol Synonym(s)=RHS10;Oryzabase Gene Name Synonym(s)=rice RHS10 ortholog;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK099276 (DDBJ%2C Best hit);ORF_evidence=E5GBJ3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023105H10;Oryzabase=20950;Expression=AK099276;TENOR=Os03t0568800-02;KEGG=Os03t0568800-02
Chr03	irgsp1_rep	five_prime_UTR	20569386	20569592	.	+	.	Parent=Os03t0568800-02
Chr03	irgsp1_rep	CDS	20569593	20570484	.	+	0	Parent=Os03t0568800-02
Chr03	irgsp1_rep	CDS	20570569	20571048	.	+	2	Parent=Os03t0568800-02
Chr03	irgsp1_rep	CDS	20571168	20571238	.	+	2	Parent=Os03t0568800-02
Chr03	irgsp1_rep	CDS	20571343	20571419	.	+	0	Parent=Os03t0568800-02
Chr03	irgsp1_rep	CDS	20571583	20571730	.	+	1	Parent=Os03t0568800-02
Chr03	irgsp1_rep	CDS	20571853	20572014	.	+	0	Parent=Os03t0568800-02
Chr03	irgsp1_rep	CDS	20572250	20572447	.	+	0	Parent=Os03t0568800-02
Chr03	irgsp1_rep	three_prime_UTR	20572448	20572604	.	+	.	Parent=Os03t0568800-02
Chr03	irgsp1_rep	mRNA	20569603	20572016	.	-	.	ID=Os03t0568850-00;Name=Os03t0568850-00;Locus_id=Os03g0568850;Note=Hypothetical protein.;Transcript_evidence=tplb0028p02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0568850-00
Chr03	irgsp1_rep	five_prime_UTR	20571822	20572016	.	-	.	Parent=Os03t0568850-00
Chr03	irgsp1_rep	five_prime_UTR	20571439	20571703	.	-	.	Parent=Os03t0568850-00
Chr03	irgsp1_rep	five_prime_UTR	20570952	20571046	.	-	.	Parent=Os03t0568850-00
Chr03	irgsp1_rep	CDS	20570229	20570951	.	-	0	Parent=Os03t0568850-00
Chr03	irgsp1_rep	three_prime_UTR	20570150	20570228	.	-	.	Parent=Os03t0568850-00
Chr03	irgsp1_rep	three_prime_UTR	20569603	20569938	.	-	.	Parent=Os03t0568850-00
Chr03	irgsp1_rep	mRNA	20574259	20579351	.	-	.	ID=Os03t0568900-01;Name=Os03t0568900-01;Locus_id=Os03g0568900;CGSNL Gene Symbol=PAP18;CGSNL Gene Name=PURPLE ACID PHOSPHATASE 18;Oryzabase Gene Symbol Synonym(s)=OsPAP18;Oryzabase Gene Name Synonym(s)=purple acid phosphatase 18;Note=Similar to Purple acid phosphatase.;Transcript_evidence=AK060200 (DDBJ%2C Best hit);ORF_evidence=B6TKL3 (UniProt);GO=Molecular Function: acid phosphatase activity (GO:0003993),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: metal ion binding (GO:0046872);InterPro=Metallophosphoesterase domain (IPR004843),Purple acid phosphatase-like%2C N-terminal (IPR008963),Purple acid phosphatase%2C N-terminal (IPR015914);NIAS_FLcDNA=001-001-G01;Oryzabase=11387;Expression=AK060200;TENOR=Os03t0568900-01;KEGG=Os03t0568900-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	20579351	20579351	.	-	.	Parent=Os03t0568900-01
Chr03	irgsp1_rep	CDS	20579105	20579350	.	-	0	Parent=Os03t0568900-01
Chr03	irgsp1_rep	CDS	20577014	20577682	.	-	0	Parent=Os03t0568900-01
Chr03	irgsp1_rep	CDS	20575049	20575237	.	-	0	Parent=Os03t0568900-01
Chr03	irgsp1_rep	CDS	20574845	20574933	.	-	0	Parent=Os03t0568900-01
Chr03	irgsp1_rep	CDS	20574545	20574764	.	-	1	Parent=Os03t0568900-01
Chr03	irgsp1_rep	three_prime_UTR	20574259	20574544	.	-	.	Parent=Os03t0568900-01
Chr03	irgsp1_rep	mRNA	20584426	20586557	.	-	.	ID=Os03t0569000-01;Name=Os03t0569000-01;Locus_id=Os03g0569000;Note=Conserved hypothetical protein.;Transcript_evidence=AK064455 (DDBJ%2C Best hit);ORF_evidence=Q10I08 (UniProt);NIAS_FLcDNA=002-110-F10;TENOR=Os03t0569000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	20586556	20586557	.	-	.	Parent=Os03t0569000-01
Chr03	irgsp1_rep	CDS	20584960	20586555	.	-	0	Parent=Os03t0569000-01
Chr03	irgsp1_rep	CDS	20584798	20584854	.	-	0	Parent=Os03t0569000-01
Chr03	irgsp1_rep	three_prime_UTR	20584773	20584797	.	-	.	Parent=Os03t0569000-01
Chr03	irgsp1_rep	three_prime_UTR	20584426	20584689	.	-	.	Parent=Os03t0569000-01
Chr03	irgsp1_rep	mRNA	20650253	20652767	.	+	.	ID=Os03t0569800-01;Name=Os03t0569800-01;Locus_id=Os03g0569800;Note=Similar to ATP binding protein.;Transcript_evidence=AK120873 (DDBJ%2C Best hit);ORF_evidence=Q10HZ9 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J023026M17;Expression=AK120873;TENOR=Os03t0569800-01;KEGG=Os03t0569800-01
Chr03	irgsp1_rep	five_prime_UTR	20650253	20650321	.	+	.	Parent=Os03t0569800-01
Chr03	irgsp1_rep	CDS	20650322	20652256	.	+	0	Parent=Os03t0569800-01
Chr03	irgsp1_rep	three_prime_UTR	20652257	20652767	.	+	.	Parent=Os03t0569800-01
Chr03	irgsp1_rep	mRNA	20650318	20653294	.	+	.	ID=Os03t0569800-02;Name=Os03t0569800-02;Locus_id=Os03g0569800;Note=Similar to ATP binding protein.;Transcript_evidence=AK070080 (DDBJ%2C Best hit);ORF_evidence=NP_001147073.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J023045J04;Expression=AK070080;TENOR=Os03t0569800-02;KEGG=Os03t0569800-02
Chr03	irgsp1_rep	five_prime_UTR	20650318	20650321	.	+	.	Parent=Os03t0569800-02
Chr03	irgsp1_rep	CDS	20650322	20652256	.	+	0	Parent=Os03t0569800-02
Chr03	irgsp1_rep	three_prime_UTR	20652257	20653294	.	+	.	Parent=Os03t0569800-02
Chr03	irgsp1_rep	mRNA	20651174	20652231	.	-	.	ID=Os03t0569850-00;Name=Os03t0569850-00;Locus_id=Os03g0569850;Note=Non-protein coding transcript.;Transcript_evidence=tplb0024g14 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os03t0569850-00
Chr03	irgsp1_rep	exon	20651719	20652231	.	-	.	Parent=Os03t0569850-00
Chr03	irgsp1_rep	exon	20651174	20651609	.	-	.	Parent=Os03t0569850-00
Chr03	irgsp1_rep	mRNA	20655023	20661172	.	-	.	ID=Os03t0569900-01;Name=Os03t0569900-01;Locus_id=Os03g0569900;Note=Similar to RNA Binding Protein 45.;Transcript_evidence=AK101593 (DDBJ%2C Best hit);ORF_evidence=Q10HZ7 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033051E20;Expression=AK101593;TENOR=Os03t0569900-01;KEGG=Os03t0569900-01
Chr03	irgsp1_rep	five_prime_UTR	20661039	20661172	.	-	.	Parent=Os03t0569900-01
Chr03	irgsp1_rep	CDS	20660763	20661038	.	-	0	Parent=Os03t0569900-01
Chr03	irgsp1_rep	CDS	20659737	20660211	.	-	0	Parent=Os03t0569900-01
Chr03	irgsp1_rep	CDS	20656322	20656377	.	-	2	Parent=Os03t0569900-01
Chr03	irgsp1_rep	CDS	20656116	20656246	.	-	0	Parent=Os03t0569900-01
Chr03	irgsp1_rep	CDS	20655759	20655855	.	-	1	Parent=Os03t0569900-01
Chr03	irgsp1_rep	CDS	20655499	20655669	.	-	0	Parent=Os03t0569900-01
Chr03	irgsp1_rep	CDS	20655389	20655391	.	-	0	Parent=Os03t0569900-01
Chr03	irgsp1_rep	three_prime_UTR	20655023	20655388	.	-	.	Parent=Os03t0569900-01
Chr03	irgsp1_rep	mRNA	20659435	20661069	.	-	.	ID=Os03t0569900-02;Name=Os03t0569900-02;Locus_id=Os03g0569900;Note=Hypothetical conserved gene.;Transcript_evidence=AK119985 (DDBJ%2C Best hit);ORF_evidence=A3AJP7 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=002-184-F11;Expression=AK119985;TENOR=Os03t0569900-02;KEGG=Os03t0569900-02
Chr03	irgsp1_rep	five_prime_UTR	20661039	20661069	.	-	.	Parent=Os03t0569900-02
Chr03	irgsp1_rep	CDS	20660763	20661038	.	-	0	Parent=Os03t0569900-02
Chr03	irgsp1_rep	CDS	20659714	20660211	.	-	0	Parent=Os03t0569900-02
Chr03	irgsp1_rep	three_prime_UTR	20659435	20659713	.	-	.	Parent=Os03t0569900-02
Chr03	irgsp1_rep	mRNA	20655304	20659862	.	-	.	ID=Os03t0569900-03;Name=Os03t0569900-03;Locus_id=Os03g0569900;Note=Similar to RNA recognition motif family protein%2C expressed.;Transcript_evidence=AK063783 (DDBJ%2C Best hit);ORF_evidence=Q10HZ7 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-121-D09;Expression=AK063783;TENOR=Os03t0569900-03;KEGG=Os03t0569900-03
Chr03	irgsp1_rep	five_prime_UTR	20659861	20659862	.	-	.	Parent=Os03t0569900-03
Chr03	irgsp1_rep	CDS	20659737	20659860	.	-	0	Parent=Os03t0569900-03
Chr03	irgsp1_rep	CDS	20656322	20656377	.	-	2	Parent=Os03t0569900-03
Chr03	irgsp1_rep	CDS	20656116	20656246	.	-	0	Parent=Os03t0569900-03
Chr03	irgsp1_rep	CDS	20655759	20655855	.	-	1	Parent=Os03t0569900-03
Chr03	irgsp1_rep	CDS	20655484	20655669	.	-	0	Parent=Os03t0569900-03
Chr03	irgsp1_rep	three_prime_UTR	20655304	20655483	.	-	.	Parent=Os03t0569900-03
Chr03	irgsp1_rep	mRNA	20660143	20661065	.	+	.	ID=Os03t0570000-00;Name=Os03t0570000-00;Locus_id=Os03g0570000;Note=Hypothetical protein.;Transcript_evidence=BT009008 (DDBJ);ORF_evidence=GeneMark;TENOR=Os03t0570000-00
Chr03	irgsp1_rep	five_prime_UTR	20660143	20660218	.	+	.	Parent=Os03t0570000-00
Chr03	irgsp1_rep	CDS	20660219	20660238	.	+	0	Parent=Os03t0570000-00
Chr03	irgsp1_rep	CDS	20660782	20661065	.	+	1	Parent=Os03t0570000-00
Chr03	irgsp1_rep	mRNA	20666069	20670823	.	-	.	ID=Os03t0570100-01;Name=Os03t0570100-01;Locus_id=Os03g0570100;Note=Similar to CytoChrome P450 79A1 (EC 1.14.13.41) (Tyrosine N-monooxygenase) (CytoChrome P450Tyr).;Transcript_evidence=AK119569 (DDBJ%2C Best hit);ORF_evidence=Q01MC1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=002-117-A08;Expression=AK119569;TENOR=Os03t0570100-01;KEGG=Os03t0570100-01 (EC:1.14.13.-%2C EC:1.14.13.41)
Chr03	irgsp1_rep	five_prime_UTR	20670780	20670823	.	-	.	Parent=Os03t0570100-01
Chr03	irgsp1_rep	CDS	20669793	20670779	.	-	0	Parent=Os03t0570100-01
Chr03	irgsp1_rep	CDS	20666225	20666881	.	-	0	Parent=Os03t0570100-01
Chr03	irgsp1_rep	three_prime_UTR	20666069	20666224	.	-	.	Parent=Os03t0570100-01
Chr03	irgsp1_rep	mRNA	20676986	20685924	.	-	.	ID=Os03t0570200-00;Name=Os03t0570200-00;Locus_id=Os03g0570200;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001050518.1 (RefSeq);TENOR=Os03t0570200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	20685885	20685924	.	-	0	Parent=Os03t0570200-00
Chr03	irgsp1_rep	CDS	20682410	20682478	.	-	2	Parent=Os03t0570200-00
Chr03	irgsp1_rep	CDS	20681226	20681365	.	-	2	Parent=Os03t0570200-00
Chr03	irgsp1_rep	CDS	20680854	20681012	.	-	0	Parent=Os03t0570200-00
Chr03	irgsp1_rep	CDS	20680670	20680773	.	-	0	Parent=Os03t0570200-00
Chr03	irgsp1_rep	CDS	20678113	20678288	.	-	1	Parent=Os03t0570200-00
Chr03	irgsp1_rep	CDS	20676986	20677068	.	-	2	Parent=Os03t0570200-00
Chr03	irgsp1_rep	mRNA	20690718	20692541	.	-	.	ID=Os03t0570300-01;Name=Os03t0570300-01;Locus_id=Os03g0570300;Note=Zinc finger%2C C2H2-like domain containing protein.;Transcript_evidence=AK069396 (DDBJ%2C Best hit);ORF_evidence=NP_001150142.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=KOW (IPR005824),Zinc finger%2C C2H2-like (IPR015880),DNA/RNA-binding protein Kin17%2C conserved domain (IPR019447);NIAS_FLcDNA=J023014K13;Expression=AK069396;TENOR=Os03t0570300-01;KEGG=Os03t0570300-01
Chr03	irgsp1_rep	five_prime_UTR	20692322	20692541	.	-	.	Parent=Os03t0570300-01
Chr03	irgsp1_rep	CDS	20691029	20692321	.	-	0	Parent=Os03t0570300-01
Chr03	irgsp1_rep	three_prime_UTR	20690718	20691028	.	-	.	Parent=Os03t0570300-01
Chr03	irgsp1_rep	mRNA	20724891	20728885	.	+	.	ID=Os03t0570775-01;Name=Os03t0570775-01;Locus_id=Os03g0570775;Note=Hypothetical gene.;Transcript_evidence=AK288887 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090079L15;TENOR=Os03t0570775-01;KEGG=Os03t0570775-01
Chr03	irgsp1_rep	five_prime_UTR	20724891	20728070	.	+	.	Parent=Os03t0570775-01
Chr03	irgsp1_rep	CDS	20728071	20728349	.	+	0	Parent=Os03t0570775-01
Chr03	irgsp1_rep	three_prime_UTR	20728350	20728885	.	+	.	Parent=Os03t0570775-01
Chr03	irgsp1_rep	mRNA	20725388	20747318	.	-	.	ID=Os03t0570800-01;Name=Os03t0570800-01;Locus_id=Os03g0570800;Note=Multi antimicrobial extrusion protein MatE family protein.;Transcript_evidence=AK101639 (DDBJ%2C Best hit);ORF_evidence=NP_001149176.1 (RefSeq);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);NIAS_FLcDNA=J033055G23;Expression=AK101639;TENOR=Os03t0570800-01;KEGG=Os03t0570800-01
Chr03	irgsp1_rep	five_prime_UTR	20747206	20747318	.	-	.	Parent=Os03t0570800-01
Chr03	irgsp1_rep	CDS	20746915	20747205	.	-	0	Parent=Os03t0570800-01
Chr03	irgsp1_rep	CDS	20728014	20728645	.	-	0	Parent=Os03t0570800-01
Chr03	irgsp1_rep	CDS	20727832	20727888	.	-	1	Parent=Os03t0570800-01
Chr03	irgsp1_rep	CDS	20727491	20727729	.	-	1	Parent=Os03t0570800-01
Chr03	irgsp1_rep	CDS	20727208	20727326	.	-	2	Parent=Os03t0570800-01
Chr03	irgsp1_rep	CDS	20726592	20726678	.	-	0	Parent=Os03t0570800-01
Chr03	irgsp1_rep	CDS	20725504	20725581	.	-	0	Parent=Os03t0570800-01
Chr03	irgsp1_rep	three_prime_UTR	20725388	20725503	.	-	.	Parent=Os03t0570800-01
Chr03	irgsp1_rep	mRNA	20772675	20782658	.	-	.	ID=Os03t0571700-01;Name=Os03t0571700-01;Locus_id=Os03g0571700;Note=Similar to TRANSPARENT TESTA 12 protein.;Transcript_evidence=AK107345 (DDBJ%2C Best hit);ORF_evidence=Q10HY2 (UniProt);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);NIAS_FLcDNA=002-126-G08;Expression=AK107345;TENOR=Os03t0571700-01;KEGG=Os03t0571700-01
Chr03	irgsp1_rep	five_prime_UTR	20782614	20782658	.	-	.	Parent=Os03t0571700-01
Chr03	irgsp1_rep	CDS	20782538	20782613	.	-	0	Parent=Os03t0571700-01
Chr03	irgsp1_rep	CDS	20778509	20778971	.	-	2	Parent=Os03t0571700-01
Chr03	irgsp1_rep	CDS	20778325	20778381	.	-	1	Parent=Os03t0571700-01
Chr03	irgsp1_rep	CDS	20777268	20777506	.	-	1	Parent=Os03t0571700-01
Chr03	irgsp1_rep	CDS	20773299	20773417	.	-	2	Parent=Os03t0571700-01
Chr03	irgsp1_rep	CDS	20773117	20773203	.	-	0	Parent=Os03t0571700-01
Chr03	irgsp1_rep	CDS	20772912	20772983	.	-	0	Parent=Os03t0571700-01
Chr03	irgsp1_rep	three_prime_UTR	20772675	20772911	.	-	.	Parent=Os03t0571700-01
Chr03	irgsp1_rep	mRNA	20778588	20779157	.	+	.	ID=Os03t0571800-00;Name=Os03t0571800-00;Locus_id=Os03g0571800;Note=Hypothetical protein.;Transcript_evidence=FP100340 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0571800-00
Chr03	irgsp1_rep	five_prime_UTR	20778588	20778588	.	+	.	Parent=Os03t0571800-00
Chr03	irgsp1_rep	CDS	20778589	20779157	.	+	0	Parent=Os03t0571800-00
Chr03	irgsp1_rep	mRNA	20793274	20799805	.	-	.	ID=Os03t0571900-01;Name=Os03t0571900-01;Locus_id=Os03g0571900;Oryzabase Gene Symbol Synonym(s)=PEZ1%2C OsPEZ1;Oryzabase Gene Name Synonym(s)=phenolics efflux zero 1;Note=Similar to transparent testa 12 protein.;Transcript_evidence=AK243209 (DDBJ%2C Best hit);ORF_evidence=Q10HY1 (UniProt);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);NIAS_FLcDNA=J100042C13;Oryzabase=19073;TENOR=Os03t0571900-01;KEGG=Os03t0571900-01
Chr03	irgsp1_rep	five_prime_UTR	20799701	20799805	.	-	.	Parent=Os03t0571900-01
Chr03	irgsp1_rep	CDS	20799335	20799700	.	-	0	Parent=Os03t0571900-01
Chr03	irgsp1_rep	CDS	20796711	20797342	.	-	0	Parent=Os03t0571900-01
Chr03	irgsp1_rep	CDS	20796552	20796608	.	-	1	Parent=Os03t0571900-01
Chr03	irgsp1_rep	CDS	20796194	20796432	.	-	1	Parent=Os03t0571900-01
Chr03	irgsp1_rep	CDS	20795976	20796094	.	-	2	Parent=Os03t0571900-01
Chr03	irgsp1_rep	CDS	20795611	20795697	.	-	0	Parent=Os03t0571900-01
Chr03	irgsp1_rep	CDS	20793506	20793568	.	-	0	Parent=Os03t0571900-01
Chr03	irgsp1_rep	three_prime_UTR	20793274	20793505	.	-	.	Parent=Os03t0571900-01
Chr03	irgsp1_rep	mRNA	20795609	20799585	.	+	.	ID=Os03t0572050-00;Name=Os03t0572050-00;Locus_id=Os03g0572050;Note=Hypothetical protein.;Transcript_evidence=tplb0045m16 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0572050-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	20795609	20795610	.	+	.	Parent=Os03t0572050-00
Chr03	irgsp1_rep	CDS	20795611	20795702	.	+	0	Parent=Os03t0572050-00
Chr03	irgsp1_rep	CDS	20795981	20796098	.	+	1	Parent=Os03t0572050-00
Chr03	irgsp1_rep	CDS	20796201	20796431	.	+	0	Parent=Os03t0572050-00
Chr03	irgsp1_rep	CDS	20796551	20796577	.	+	0	Parent=Os03t0572050-00
Chr03	irgsp1_rep	three_prime_UTR	20796578	20796602	.	+	.	Parent=Os03t0572050-00
Chr03	irgsp1_rep	three_prime_UTR	20796705	20797342	.	+	.	Parent=Os03t0572050-00
Chr03	irgsp1_rep	three_prime_UTR	20799335	20799585	.	+	.	Parent=Os03t0572050-00
Chr03	irgsp1_rep	mRNA	20803406	20803480	.	+	.	ID=Os03t0572083-00;Name=Os03t0572083-00;Locus_id=Os03g0572083;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0572083-00
Chr03	irgsp1_rep	exon	20803406	20803480	.	+	.	Parent=Os03t0572083-00
Chr03	irgsp1_rep	mRNA	20837973	20839908	.	-	.	ID=Os03t0572250-01;Name=Os03t0572250-01;Locus_id=Os03g0572250;Note=Conserved hypothetical protein.;Transcript_evidence=AK240710 (DDBJ%2C Best hit);ORF_evidence=NP_001173504.1 (RefSeq);NIAS_FLcDNA=J043021H19;TENOR=Os03t0572250-01;KEGG=Os03t0572250-01
Chr03	irgsp1_rep	five_prime_UTR	20839813	20839908	.	-	.	Parent=Os03t0572250-01
Chr03	irgsp1_rep	CDS	20839562	20839812	.	-	0	Parent=Os03t0572250-01
Chr03	irgsp1_rep	CDS	20838277	20838658	.	-	1	Parent=Os03t0572250-01
Chr03	irgsp1_rep	three_prime_UTR	20837973	20838276	.	-	.	Parent=Os03t0572250-01
Chr03	irgsp1_rep	mRNA	20842247	20846882	.	-	.	ID=Os03t0572300-01;Name=Os03t0572300-01;Locus_id=Os03g0572300;Note=Modifier of rudimentary%2C Modr family protein.;Transcript_evidence=AK061375 (DDBJ%2C Best hit);ORF_evidence=Q10QR5 (UniProt);InterPro=Modifier of rudimentary%2C Modr (IPR009851);NIAS_FLcDNA=006-304-F12;Expression=AK061375;TENOR=Os03t0572300-01;KEGG=Os03t0572300-01
Chr03	irgsp1_rep	five_prime_UTR	20846613	20846882	.	-	.	Parent=Os03t0572300-01
Chr03	irgsp1_rep	five_prime_UTR	20845123	20845136	.	-	.	Parent=Os03t0572300-01
Chr03	irgsp1_rep	CDS	20845097	20845122	.	-	0	Parent=Os03t0572300-01
Chr03	irgsp1_rep	CDS	20844457	20844672	.	-	1	Parent=Os03t0572300-01
Chr03	irgsp1_rep	CDS	20843839	20843926	.	-	1	Parent=Os03t0572300-01
Chr03	irgsp1_rep	CDS	20843390	20843429	.	-	0	Parent=Os03t0572300-01
Chr03	irgsp1_rep	CDS	20843206	20843252	.	-	2	Parent=Os03t0572300-01
Chr03	irgsp1_rep	CDS	20842892	20843012	.	-	0	Parent=Os03t0572300-01
Chr03	irgsp1_rep	CDS	20842381	20842541	.	-	2	Parent=Os03t0572300-01
Chr03	irgsp1_rep	three_prime_UTR	20842247	20842380	.	-	.	Parent=Os03t0572300-01
Chr03	irgsp1_rep	mRNA	20868361	20875711	.	-	.	ID=Os03t0572900-01;Name=Os03t0572900-01;Locus_id=Os03g0572900;Oryzabase Gene Symbol Synonym(s)=PEZ2;Oryzabase Gene Name Synonym(s)=phenolics efflux zero 2%2C phenolics efflux transporter 2;Note=Multi antimicrobial extrusion protein MatE family protein.;Transcript_evidence=AK102204 (DDBJ%2C Best hit);ORF_evidence=Q10HX0 (UniProt);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);NIAS_FLcDNA=J033087G07;Oryzabase=19074;Expression=AK102204;TENOR=Os03t0572900-01;KEGG=Os03t0572900-01
Chr03	irgsp1_rep	five_prime_UTR	20875642	20875711	.	-	.	Parent=Os03t0572900-01
Chr03	irgsp1_rep	CDS	20875357	20875641	.	-	0	Parent=Os03t0572900-01
Chr03	irgsp1_rep	CDS	20871072	20871703	.	-	0	Parent=Os03t0572900-01
Chr03	irgsp1_rep	CDS	20870667	20870723	.	-	1	Parent=Os03t0572900-01
Chr03	irgsp1_rep	CDS	20870346	20870584	.	-	1	Parent=Os03t0572900-01
Chr03	irgsp1_rep	CDS	20869651	20869769	.	-	2	Parent=Os03t0572900-01
Chr03	irgsp1_rep	CDS	20869452	20869538	.	-	0	Parent=Os03t0572900-01
Chr03	irgsp1_rep	CDS	20868705	20868788	.	-	0	Parent=Os03t0572900-01
Chr03	irgsp1_rep	three_prime_UTR	20868361	20868704	.	-	.	Parent=Os03t0572900-01
Chr03	irgsp1_rep	mRNA	20869445	20875638	.	+	.	ID=Os03t0572925-00;Name=Os03t0572925-00;Locus_id=Os03g0572925;Note=Hypothetical protein.;Transcript_evidence=tplb0057a08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0572925-00
Chr03	irgsp1_rep	five_prime_UTR	20869445	20869537	.	+	.	Parent=Os03t0572925-00
Chr03	irgsp1_rep	five_prime_UTR	20869650	20869771	.	+	.	Parent=Os03t0572925-00
Chr03	irgsp1_rep	five_prime_UTR	20870353	20870587	.	+	.	Parent=Os03t0572925-00
Chr03	irgsp1_rep	five_prime_UTR	20870670	20870747	.	+	.	Parent=Os03t0572925-00
Chr03	irgsp1_rep	five_prime_UTR	20871098	20871638	.	+	.	Parent=Os03t0572925-00
Chr03	irgsp1_rep	CDS	20871639	20871710	.	+	0	Parent=Os03t0572925-00
Chr03	irgsp1_rep	CDS	20875363	20875638	.	+	0	Parent=Os03t0572925-00
Chr03	irgsp1_rep	mRNA	20886344	20888055	.	+	.	ID=Os03t0573001-00;Name=Os03t0573001-00;Locus_id=Os03g0573001;Note=Conserved hypothetical protein.;Transcript_evidence=CT837837 (DDBJ%2C Best hit);ORF_evidence=Q2QUQ2 (UniProt);TENOR=Os03t0573001-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	20886344	20887499	.	+	.	Parent=Os03t0573001-00
Chr03	irgsp1_rep	CDS	20887500	20887727	.	+	0	Parent=Os03t0573001-00
Chr03	irgsp1_rep	three_prime_UTR	20887728	20888055	.	+	.	Parent=Os03t0573001-00
Chr03	irgsp1_rep	mRNA	20894664	20895231	.	+	.	ID=Os03t0573117-00;Name=Os03t0573117-00;Locus_id=Os03g0573117;Note=Hypothetical protein.;Transcript_evidence=AK372761 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0573117-00
Chr03	irgsp1_rep	five_prime_UTR	20894664	20894827	.	+	.	Parent=Os03t0573117-00
Chr03	irgsp1_rep	CDS	20894828	20895073	.	+	0	Parent=Os03t0573117-00
Chr03	irgsp1_rep	three_prime_UTR	20895074	20895231	.	+	.	Parent=Os03t0573117-00
Chr03	irgsp1_rep	mRNA	20913602	20917410	.	-	.	ID=Os03t0573500-00;Name=Os03t0573500-00;Locus_id=Os03g0573500;Note=Disease resistance protein domain containing protein.;Transcript_evidence=AK371901 (DDBJ);ORF_evidence=NP_001050525.1 (RefSeq);GO=Biological Process: defense response (GO:0006952),Molecular Function: protein binding (GO:0005515),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),Leucine-rich repeat (IPR001611),NB-ARC (IPR002182);TENOR=Os03t0573500-00
Chr03	irgsp1_rep	CDS	20913610	20917410	.	-	0	Parent=Os03t0573500-00
Chr03	irgsp1_rep	three_prime_UTR	20913602	20913609	.	-	.	Parent=Os03t0573500-00
Chr03	irgsp1_rep	mRNA	20914305	20917765	.	+	.	ID=Os03t0573600-01;Name=Os03t0573600-01;Locus_id=Os03g0573600;Note=Hypothetical protein.;Transcript_evidence=AK119288 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-130-D02;Expression=AK119288;TENOR=Os03t0573600-01;KEGG=Os03t0573600-01
Chr03	irgsp1_rep	five_prime_UTR	20914305	20916267	.	+	.	Parent=Os03t0573600-01
Chr03	irgsp1_rep	five_prime_UTR	20916378	20916969	.	+	.	Parent=Os03t0573600-01
Chr03	irgsp1_rep	CDS	20916970	20917449	.	+	0	Parent=Os03t0573600-01
Chr03	irgsp1_rep	three_prime_UTR	20917450	20917765	.	+	.	Parent=Os03t0573600-01
Chr03	irgsp1_rep	mRNA	20923579	20925443	.	+	.	ID=Os03t0573750-01;Name=Os03t0573750-01;Locus_id=Os03g0573750;Note=Conserved hypothetical protein.;Transcript_evidence=AK242572 (DDBJ%2C Best hit),AK289094 (DDBJ%2C Best hit);ORF_evidence=NP_001046063.1 (RefSeq);NIAS_FLcDNA=J090008B22,J090096C07;TENOR=Os03t0573750-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	20923579	20923851	.	+	.	Parent=Os03t0573750-01
Chr03	irgsp1_rep	CDS	20923852	20924070	.	+	0	Parent=Os03t0573750-01
Chr03	irgsp1_rep	three_prime_UTR	20924071	20924180	.	+	.	Parent=Os03t0573750-01
Chr03	irgsp1_rep	three_prime_UTR	20924383	20925443	.	+	.	Parent=Os03t0573750-01
Chr03	irgsp1_rep	mRNA	20945028	20948502	.	-	.	ID=Os03t0574300-01;Name=Os03t0574300-01;Locus_id=Os03g0574300;Note=Conserved hypothetical protein.;Transcript_evidence=AK072541 (DDBJ%2C Best hit);ORF_evidence=Q84MT8 (UniProt);NIAS_FLcDNA=J023134M10;Expression=AK072541;TENOR=Os03t0574300-01;KEGG=Os03t0574300-01
Chr03	irgsp1_rep	five_prime_UTR	20948501	20948502	.	-	.	Parent=Os03t0574300-01
Chr03	irgsp1_rep	CDS	20948200	20948500	.	-	0	Parent=Os03t0574300-01
Chr03	irgsp1_rep	CDS	20948108	20948112	.	-	2	Parent=Os03t0574300-01
Chr03	irgsp1_rep	three_prime_UTR	20945028	20948107	.	-	.	Parent=Os03t0574300-01
Chr03	irgsp1_rep	mRNA	20961329	20962190	.	-	.	ID=Os03t0574600-01;Name=Os03t0574600-01;Locus_id=Os03g0574600;Note=Conserved hypothetical protein.;Transcript_evidence=AK063006 (DDBJ%2C Best hit);ORF_evidence=A2XIS3 (UniProt);NIAS_FLcDNA=001-109-H11;TENOR=Os03t0574600-01
Chr03	irgsp1_rep	five_prime_UTR	20962044	20962190	.	-	.	Parent=Os03t0574600-01
Chr03	irgsp1_rep	five_prime_UTR	20961788	20961804	.	-	.	Parent=Os03t0574600-01
Chr03	irgsp1_rep	CDS	20961521	20961787	.	-	0	Parent=Os03t0574600-01
Chr03	irgsp1_rep	three_prime_UTR	20961329	20961520	.	-	.	Parent=Os03t0574600-01
Chr03	irgsp1_rep	mRNA	20961329	20962088	.	-	.	ID=Os03t0574600-02;Name=Os03t0574600-02;Locus_id=Os03g0574600;Note=Conserved hypothetical protein.;Transcript_evidence=AK104941 (DDBJ%2C Best hit);ORF_evidence=A2XIS3 (UniProt);NIAS_FLcDNA=001-106-H06;TENOR=Os03t0574600-02
Chr03	irgsp1_rep	five_prime_UTR	20962044	20962088	.	-	.	Parent=Os03t0574600-02
Chr03	irgsp1_rep	five_prime_UTR	20961788	20961804	.	-	.	Parent=Os03t0574600-02
Chr03	irgsp1_rep	CDS	20961521	20961787	.	-	0	Parent=Os03t0574600-02
Chr03	irgsp1_rep	three_prime_UTR	20961329	20961520	.	-	.	Parent=Os03t0574600-02
Chr03	irgsp1_rep	mRNA	20978620	20985759	.	-	.	ID=Os03t0574900-01;Name=Os03t0574900-01;Locus_id=Os03g0574900;CGSNL Gene Symbol=HAK27;CGSNL Gene Name=HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 27;Oryzabase Gene Symbol Synonym(s)=OsHAK27;Oryzabase Gene Name Synonym(s)=High-affinity Potassium(K+) Transporter 27%2C Potassium transporter 27;Note=Similar to Potassium transporter 1 (OsHAK1). Splice isoform 2.;Transcript_evidence=AK068853 (DDBJ%2C Best hit);ORF_evidence=Q84MS4 (UniProt);GO=Biological Process: potassium ion transmembrane transport (GO:0071805),Cellular Component: membrane (GO:0016020),Molecular Function: potassium ion transmembrane transporter activity (GO:0015079);InterPro=K+ potassium transporter (IPR003855);NIAS_FLcDNA=J013169G11;Oryzabase=8681;Expression=AK068853;TENOR=Os03t0574900-01;KEGG=Os03t0574900-01
Chr03	irgsp1_rep	five_prime_UTR	20985641	20985759	.	-	.	Parent=Os03t0574900-01
Chr03	irgsp1_rep	CDS	20985476	20985640	.	-	0	Parent=Os03t0574900-01
Chr03	irgsp1_rep	CDS	20984273	20984498	.	-	0	Parent=Os03t0574900-01
Chr03	irgsp1_rep	CDS	20982589	20982837	.	-	2	Parent=Os03t0574900-01
Chr03	irgsp1_rep	CDS	20982312	20982362	.	-	2	Parent=Os03t0574900-01
Chr03	irgsp1_rep	CDS	20981025	20981285	.	-	2	Parent=Os03t0574900-01
Chr03	irgsp1_rep	CDS	20980809	20980861	.	-	2	Parent=Os03t0574900-01
Chr03	irgsp1_rep	CDS	20980615	20980729	.	-	0	Parent=Os03t0574900-01
Chr03	irgsp1_rep	CDS	20980265	20980519	.	-	2	Parent=Os03t0574900-01
Chr03	irgsp1_rep	CDS	20979332	20980137	.	-	2	Parent=Os03t0574900-01
Chr03	irgsp1_rep	CDS	20978895	20979149	.	-	0	Parent=Os03t0574900-01
Chr03	irgsp1_rep	three_prime_UTR	20978620	20978894	.	-	.	Parent=Os03t0574900-01
Chr03	irgsp1_rep	mRNA	21002797	21007629	.	-	.	ID=Os03t0575200-01;Name=Os03t0575200-01;Locus_id=Os03g0575200;RAP-DB Gene Symbol Synonym(s)=OsHAK16;RAP-DB Gene Name Synonym(s)=High-affinity Potassium(K+) Transporter 16;CGSNL Gene Symbol=HAK16;CGSNL Gene Name=HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 16;Oryzabase Gene Symbol Synonym(s)=OsHAK16;Oryzabase Gene Name Synonym(s)=High-affinity Potassium(K+) Transporter 16%2C Probable potassium transporter 16;Note=High-affinity potassium transporter%2C Maintenance of potassium homeostasis%2C Salt tolerance;Transcript_evidence=AK066919;ORF_evidence=Q84MS3;GO=Biological Process: potassium ion transmembrane transport (GO:0071805),Molecular Function: potassium ion transmembrane transporter activity (GO:0015079),Cellular Component: membrane (GO:0016020);InterPro=Potassium transporter (IPR003855);NIAS_FLcDNA=J013089M07;Manual Curation=May 27%2C 2019;Literature_PMID=31119363;Oryzabase=8670;Expression=AK066919;TENOR=Os03t0575200-01;KEGG=Os03t0575200-01;Subcellular location=plasma membrane (GO:0005886)
Chr03	irgsp1_rep	five_prime_UTR	21007419	21007629	.	-	.	Parent=Os03t0575200-01
Chr03	irgsp1_rep	CDS	21007245	21007418	.	-	0	Parent=Os03t0575200-01
Chr03	irgsp1_rep	CDS	21006765	21006987	.	-	0	Parent=Os03t0575200-01
Chr03	irgsp1_rep	CDS	21006408	21006656	.	-	2	Parent=Os03t0575200-01
Chr03	irgsp1_rep	CDS	21006242	21006292	.	-	2	Parent=Os03t0575200-01
Chr03	irgsp1_rep	CDS	21005487	21005747	.	-	2	Parent=Os03t0575200-01
Chr03	irgsp1_rep	CDS	21005224	21005276	.	-	2	Parent=Os03t0575200-01
Chr03	irgsp1_rep	CDS	21004651	21004771	.	-	0	Parent=Os03t0575200-01
Chr03	irgsp1_rep	CDS	21004296	21004550	.	-	2	Parent=Os03t0575200-01
Chr03	irgsp1_rep	CDS	21003415	21004208	.	-	2	Parent=Os03t0575200-01
Chr03	irgsp1_rep	CDS	21003054	21003308	.	-	0	Parent=Os03t0575200-01
Chr03	irgsp1_rep	three_prime_UTR	21002797	21003053	.	-	.	Parent=Os03t0575200-01
Chr03	irgsp1_rep	mRNA	21030442	21031139	.	+	.	ID=Os03t0575500-01;Name=Os03t0575500-01;Locus_id=Os03g0575500;Note=Conserved hypothetical protein.;Transcript_evidence=AK120300 (DDBJ%2C Best hit);ORF_evidence=Q75G78 (UniProt);NIAS_FLcDNA=J013052E03;Expression=AK120300;TENOR=Os03t0575500-01;KEGG=Os03t0575500-01
Chr03	irgsp1_rep	five_prime_UTR	21030442	21030443	.	+	.	Parent=Os03t0575500-01
Chr03	irgsp1_rep	CDS	21030444	21030926	.	+	0	Parent=Os03t0575500-01
Chr03	irgsp1_rep	three_prime_UTR	21030927	21031139	.	+	.	Parent=Os03t0575500-01
Chr03	irgsp1_rep	mRNA	21030465	21031298	.	+	.	ID=Os03t0575500-02;Name=Os03t0575500-02;Locus_id=Os03g0575500;Note=Conserved hypothetical protein.;Transcript_evidence=AK062576 (DDBJ%2C Best hit);ORF_evidence=Q75G78 (UniProt);NIAS_FLcDNA=001-047-C05;TENOR=Os03t0575500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	21030465	21030465	.	+	.	Parent=Os03t0575500-02
Chr03	irgsp1_rep	CDS	21030466	21030804	.	+	0	Parent=Os03t0575500-02
Chr03	irgsp1_rep	three_prime_UTR	21030805	21031298	.	+	.	Parent=Os03t0575500-02
Chr03	irgsp1_rep	mRNA	21037379	21038297	.	-	.	ID=Os03t0575700-01;Name=Os03t0575700-01;Locus_id=Os03g0575700;Note=Conserved hypothetical protein.;Transcript_evidence=AK062701 (DDBJ%2C Best hit);ORF_evidence=Q84MT7 (UniProt);NIAS_FLcDNA=001-106-B02;Expression=AK062701;TENOR=Os03t0575700-01;KEGG=Os03t0575700-01
Chr03	irgsp1_rep	five_prime_UTR	21037937	21038297	.	-	.	Parent=Os03t0575700-01
Chr03	irgsp1_rep	CDS	21037490	21037936	.	-	0	Parent=Os03t0575700-01
Chr03	irgsp1_rep	three_prime_UTR	21037379	21037489	.	-	.	Parent=Os03t0575700-01
Chr03	irgsp1_rep	mRNA	21053709	21055527	.	-	.	ID=Os03t0575950-00;Name=Os03t0575950-00;Locus_id=Os03g0575950;Note=Hypothetical protein.;Transcript_evidence=CT835225 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os03t0575950-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	21055525	21055527	.	-	.	Parent=Os03t0575950-00
Chr03	irgsp1_rep	CDS	21055245	21055524	.	-	0	Parent=Os03t0575950-00
Chr03	irgsp1_rep	CDS	21054935	21054999	.	-	2	Parent=Os03t0575950-00
Chr03	irgsp1_rep	CDS	21054615	21054675	.	-	0	Parent=Os03t0575950-00
Chr03	irgsp1_rep	CDS	21053910	21053953	.	-	2	Parent=Os03t0575950-00
Chr03	irgsp1_rep	three_prime_UTR	21053709	21053909	.	-	.	Parent=Os03t0575950-00
Chr03	irgsp1_rep	mRNA	21060413	21064968	.	-	.	ID=Os03t0576200-01;Name=Os03t0576200-01;Locus_id=Os03g0576200;RAP-DB Gene Symbol Synonym(s)=OsHAK21;RAP-DB Gene Name Synonym(s)=High-affinity Potassium(K+) Transporter 21%2C Potassium transporter 21;CGSNL Gene Symbol=HAK21;CGSNL Gene Name=HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 21;Oryzabase Gene Symbol Synonym(s)=OsHAK21;Oryzabase Gene Name Synonym(s)=High-affinity Potassium(K+) Transporter 21%2C Potassium transporter 21;Note=High affinity K<sup>+</sup> transporter (HAK)%2C Maintenance of ion homeostasis%2C Salinity tolerance;Transcript_evidence=Inferred from literature;ORF_evidence=Q75G84;GO=Biological Process: potassium ion transmembrane transport (GO:0071805),Molecular Function: potassium ion transmembrane transporter activity (GO:0015079),Cellular Component: membrane (GO:0016020);InterPro=Potassium transporter (IPR003855);Manual Curation=April 9%2C 2019;Literature_PMID=30537381,26046379;Oryzabase=8675;TENOR=Os03t0576200-00;Subcellular location=plasma membrane (GO:0005886)
Chr03	irgsp1_rep	CDS	21064825	21064968	.	-	0	Parent=Os03t0576200-01
Chr03	irgsp1_rep	CDS	21064012	21064234	.	-	0	Parent=Os03t0576200-01
Chr03	irgsp1_rep	CDS	21063371	21063622	.	-	2	Parent=Os03t0576200-01
Chr03	irgsp1_rep	CDS	21063207	21063257	.	-	2	Parent=Os03t0576200-01
Chr03	irgsp1_rep	CDS	21062621	21062881	.	-	2	Parent=Os03t0576200-01
Chr03	irgsp1_rep	CDS	21062467	21062519	.	-	2	Parent=Os03t0576200-01
Chr03	irgsp1_rep	CDS	21062221	21062335	.	-	0	Parent=Os03t0576200-01
Chr03	irgsp1_rep	CDS	21061872	21062126	.	-	2	Parent=Os03t0576200-01
Chr03	irgsp1_rep	CDS	21060980	21061770	.	-	2	Parent=Os03t0576200-01
Chr03	irgsp1_rep	CDS	21060638	21060892	.	-	0	Parent=Os03t0576200-01
Chr03	irgsp1_rep	three_prime_UTR	21060413	21060637	.	-	.	Parent=Os03t0576200-01
Chr03	irgsp1_rep	mRNA	21078683	21079538	.	+	.	ID=Os03t0576400-00;Name=Os03t0576400-00;Locus_id=Os03g0576400;Note=Similar to 26S proteasome non-ATPase regulatory subunit 11.;Transcript_evidence=ab initio prediction;ORF_evidence=B6TWL4 (UniProt);TENOR=Os03t0576400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	21078683	21078702	.	+	0	Parent=Os03t0576400-00
Chr03	irgsp1_rep	CDS	21079226	21079538	.	+	1	Parent=Os03t0576400-00
Chr03	irgsp1_rep	mRNA	21081361	21081960	.	+	.	ID=Os03t0576500-01;Name=Os03t0576500-01;Locus_id=Os03g0576500;Note=Conserved hypothetical protein.;Transcript_evidence=AK062436 (DDBJ%2C Best hit);ORF_evidence=NP_001061061.1 (RefSeq);NIAS_FLcDNA=001-103-A05;Expression=AK062436;TENOR=Os03t0576500-01;KEGG=Os03t0576500-01
Chr03	irgsp1_rep	five_prime_UTR	21081361	21081465	.	+	.	Parent=Os03t0576500-01
Chr03	irgsp1_rep	CDS	21081466	21081729	.	+	0	Parent=Os03t0576500-01
Chr03	irgsp1_rep	three_prime_UTR	21081730	21081960	.	+	.	Parent=Os03t0576500-01
Chr03	irgsp1_rep	mRNA	21082861	21084621	.	-	.	ID=Os03t0576600-01;Name=Os03t0576600-01;Locus_id=Os03g0576600;RAP-DB Gene Symbol Synonym(s)=OsACBP3;RAP-DB Gene Name Synonym(s)=Acyl-CoA-binding protein 3;CGSNL Gene Symbol=ACBP3;CGSNL Gene Name=ACYL-COA-BINDING PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsACBP3;Oryzabase Gene Name Synonym(s)=Acyl-CoA-binding protein 3;Note=Acyl-CoA-binding protein %2C Stress response;Transcript_evidence=Inferred from literature;ORF_evidence=Q75G87;GO=Molecular Function: fatty-acyl-CoA binding (GO:0000062);InterPro=FERM/acyl-CoA-binding protein%2C 3-helical bundle (IPR014352),Acyl-CoA-binding protein%2C ACBP (IPR000582),Acyl-CoA-binding protein%2C ACBP%2C conserved site (IPR022408);Manual Curation=February 16%2C 2015;Literature_PMID=24738983,21128943;Oryzabase=18293;TENOR=Os03t0576600-00
Chr03	irgsp1_rep	five_prime_UTR	21084532	21084621	.	-	.	Parent=Os03t0576600-01
Chr03	irgsp1_rep	CDS	21084520	21084531	.	-	0	Parent=Os03t0576600-01
Chr03	irgsp1_rep	CDS	21084116	21084233	.	-	0	Parent=Os03t0576600-01
Chr03	irgsp1_rep	CDS	21083247	21083309	.	-	2	Parent=Os03t0576600-01
Chr03	irgsp1_rep	CDS	21082861	21083135	.	-	2	Parent=Os03t0576600-01
Chr03	irgsp1_rep	mRNA	21086470	21088562	.	-	.	ID=Os03t0576700-01;Name=Os03t0576700-01;Locus_id=Os03g0576700;CGSNL Gene Symbol=RPL13B;CGSNL Gene Name=RIBOSOMAL PROTEIN L13B;Oryzabase Gene Symbol Synonym(s)=RPL13b%2C OsRPL13b;Oryzabase Gene Name Synonym(s)=ribosomal protein L13b;Note=Similar to 60S ribosomal protein L13 (BBC1 protein homolog).;Transcript_evidence=AK104895 (DDBJ%2C Best hit),AK070375 (DDBJ%2C Best hit),AK104259 (DDBJ%2C Best hit);ORF_evidence=Q8S9G2 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L13e (IPR001380),Ribosomal protein L13e%2C conserved site (IPR018256);NIAS_FLcDNA=001-046-A02,J023054I18,006-309-G09;Oryzabase=20209;Expression=AK104895;TENOR=Os03t0576700-01;KEGG=Os03t0576700-01
Chr03	irgsp1_rep	five_prime_UTR	21088490	21088562	.	-	.	Parent=Os03t0576700-01
Chr03	irgsp1_rep	five_prime_UTR	21088214	21088235	.	-	.	Parent=Os03t0576700-01
Chr03	irgsp1_rep	CDS	21088105	21088213	.	-	0	Parent=Os03t0576700-01
Chr03	irgsp1_rep	CDS	21087438	21087571	.	-	2	Parent=Os03t0576700-01
Chr03	irgsp1_rep	CDS	21086968	21087126	.	-	0	Parent=Os03t0576700-01
Chr03	irgsp1_rep	CDS	21086654	21086878	.	-	0	Parent=Os03t0576700-01
Chr03	irgsp1_rep	three_prime_UTR	21086470	21086653	.	-	.	Parent=Os03t0576700-01
Chr03	irgsp1_rep	mRNA	21086653	21087054	.	+	.	ID=Os03t0576801-00;Name=Os03t0576801-00;Locus_id=Os03g0576801;Note=Non-protein coding transcript.;Transcript_evidence=EU734565 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0576801-00
Chr03	irgsp1_rep	exon	21086653	21086864	.	+	.	Parent=Os03t0576801-00
Chr03	irgsp1_rep	exon	21086947	21087054	.	+	.	Parent=Os03t0576801-00
Chr03	irgsp1_rep	mRNA	21091940	21096890	.	+	.	ID=Os03t0576900-01;Name=Os03t0576900-01;Locus_id=Os03g0576900;CGSNL Gene Symbol=PUT3;CGSNL Gene Name=POLYAMINE UPTAKE TRANSPORTER 3;Oryzabase Gene Symbol Synonym(s)=OsPUT3%2C OsPUT3.1%2C OsPAR1%2C OsLAT5;Oryzabase Gene Name Synonym(s)=PA uptake transporter 3%2C polyamine uptake transporter 3%2C paraquat resistant1%2C paraquat resistant 1;Note=Amino acid/polyamine transporter I family protein.;Transcript_evidence=AK071314 (DDBJ%2C Best hit);ORF_evidence=XP_002893692.1 (RefSeq);GO=Biological Process: amino acid transmembrane transport (GO:0003333),Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: amino acid transmembrane transporter activity (GO:0015171);InterPro=Amino acid/polyamine transporter I (IPR002293),Amino acid permease domain (IPR004841);NIAS_FLcDNA=J023084D13;Oryzabase=18128;Expression=AK071314;TENOR=Os03t0576900-01;KEGG=Os03t0576900-01
Chr03	irgsp1_rep	five_prime_UTR	21091940	21092063	.	+	.	Parent=Os03t0576900-01
Chr03	irgsp1_rep	CDS	21092064	21092240	.	+	0	Parent=Os03t0576900-01
Chr03	irgsp1_rep	CDS	21095112	21096587	.	+	0	Parent=Os03t0576900-01
Chr03	irgsp1_rep	three_prime_UTR	21096588	21096890	.	+	.	Parent=Os03t0576900-01
Chr03	irgsp1_rep	mRNA	21093493	21094195	.	+	.	ID=Os03t0576900-02;Name=Os03t0576900-02;Locus_id=Os03g0576900;CGSNL Gene Symbol=PUT3;CGSNL Gene Name=POLYAMINE UPTAKE TRANSPORTER 3;Oryzabase Gene Symbol Synonym(s)=OsPUT3%2C OsPUT3.1%2C OsPAR1%2C OsLAT5;Oryzabase Gene Name Synonym(s)=PA uptake transporter 3%2C polyamine uptake transporter 3%2C paraquat resistant1%2C paraquat resistant 1;Note=Hypothetical conserved gene.;Transcript_evidence=AK064598 (DDBJ%2C Best hit);ORF_evidence=Q75G89 (UniProt);NIAS_FLcDNA=002-112-H03;Oryzabase=18128;Expression=AK064598;TENOR=Os03t0576900-02;KEGG=Os03t0576900-02
Chr03	irgsp1_rep	CDS	21093493	21093738	.	+	0	Parent=Os03t0576900-02
Chr03	irgsp1_rep	three_prime_UTR	21093739	21094195	.	+	.	Parent=Os03t0576900-02
Chr03	irgsp1_rep	mRNA	21093496	21096981	.	+	.	ID=Os03t0576900-03;Name=Os03t0576900-03;Locus_id=Os03g0576900;CGSNL Gene Symbol=PUT3;CGSNL Gene Name=POLYAMINE UPTAKE TRANSPORTER 3;Oryzabase Gene Symbol Synonym(s)=OsPUT3%2C OsPUT3.1%2C OsPAR1%2C OsLAT5;Oryzabase Gene Name Synonym(s)=PA uptake transporter 3%2C polyamine uptake transporter 3%2C paraquat resistant1%2C paraquat resistant 1;Note=Similar to cDNA clone:001-047-G03%2C full insert sequence.;Transcript_evidence=AK064861 (DDBJ%2C Best hit);ORF_evidence=XP_002893692.1 (RefSeq);GO=Biological Process: amino acid transmembrane transport (GO:0003333),Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: amino acid transmembrane transporter activity (GO:0015171);InterPro=Amino acid/polyamine transporter I (IPR002293),Amino acid permease domain (IPR004841);NIAS_FLcDNA=J013000I01;Oryzabase=18128;Expression=AK064861;TENOR=Os03t0576900-03;KEGG=Os03t0576900-03
Chr03	irgsp1_rep	five_prime_UTR	21093496	21093738	.	+	.	Parent=Os03t0576900-03
Chr03	irgsp1_rep	CDS	21093739	21093741	.	+	0	Parent=Os03t0576900-03
Chr03	irgsp1_rep	CDS	21095112	21096587	.	+	0	Parent=Os03t0576900-03
Chr03	irgsp1_rep	three_prime_UTR	21096588	21096981	.	+	.	Parent=Os03t0576900-03
Chr03	irgsp1_rep	mRNA	21094906	21096849	.	+	.	ID=Os03t0576900-04;Name=Os03t0576900-04;Locus_id=Os03g0576900;CGSNL Gene Symbol=PUT3;CGSNL Gene Name=POLYAMINE UPTAKE TRANSPORTER 3;Oryzabase Gene Symbol Synonym(s)=OsPUT3%2C OsPUT3.1%2C OsPAR1%2C OsLAT5;Oryzabase Gene Name Synonym(s)=PA uptake transporter 3%2C polyamine uptake transporter 3%2C paraquat resistant1%2C paraquat resistant 1;Note=Similar to neutral amino acid transport protein.;Transcript_evidence=AK062252 (DDBJ%2C Best hit);ORF_evidence=XP_002893692.1 (RefSeq);GO=Biological Process: amino acid transmembrane transport (GO:0003333),Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: amino acid transmembrane transporter activity (GO:0015171);InterPro=Amino acid/polyamine transporter I (IPR002293),Amino acid permease domain (IPR004841);NIAS_FLcDNA=001-047-G03;Oryzabase=18128;Expression=AK062252;TENOR=Os03t0576900-04;KEGG=Os03t0576900-04
Chr03	irgsp1_rep	five_prime_UTR	21094906	21094983	.	+	.	Parent=Os03t0576900-04
Chr03	irgsp1_rep	five_prime_UTR	21095112	21095159	.	+	.	Parent=Os03t0576900-04
Chr03	irgsp1_rep	CDS	21095160	21096587	.	+	0	Parent=Os03t0576900-04
Chr03	irgsp1_rep	three_prime_UTR	21096588	21096849	.	+	.	Parent=Os03t0576900-04
Chr03	irgsp1_rep	mRNA	21095824	21096849	.	+	.	ID=Os03t0576900-05;Name=Os03t0576900-05;Locus_id=Os03g0576900;CGSNL Gene Symbol=PUT3;CGSNL Gene Name=POLYAMINE UPTAKE TRANSPORTER 3;Oryzabase Gene Symbol Synonym(s)=OsPUT3%2C OsPUT3.1%2C OsPAR1%2C OsLAT5;Oryzabase Gene Name Synonym(s)=PA uptake transporter 3%2C polyamine uptake transporter 3%2C paraquat resistant1%2C paraquat resistant 1;Note=Similar to cDNA clone:001-047-G03%2C full insert sequence.;Transcript_evidence=AK061518 (DDBJ%2C Best hit);ORF_evidence=XP_002304384.1 (RefSeq);GO=Biological Process: amino acid transmembrane transport (GO:0003333),Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: amino acid transmembrane transporter activity (GO:0015171);InterPro=Amino acid/polyamine transporter I (IPR002293),Amino acid permease domain (IPR004841);NIAS_FLcDNA=006-310-A01;Oryzabase=18128;Expression=AK061518;TENOR=Os03t0576900-05;KEGG=Os03t0576900-05
Chr03	irgsp1_rep	five_prime_UTR	21095824	21095825	.	+	.	Parent=Os03t0576900-05
Chr03	irgsp1_rep	CDS	21095826	21096587	.	+	0	Parent=Os03t0576900-05
Chr03	irgsp1_rep	three_prime_UTR	21096588	21096849	.	+	.	Parent=Os03t0576900-05
Chr03	irgsp1_rep	mRNA	21097594	21100006	.	-	.	ID=Os03t0577000-01;Name=Os03t0577000-01;Locus_id=Os03g0577000;Note=Similar to Ribosomal protein S3 (Fragment).;Transcript_evidence=AK061051 (DDBJ%2C Best hit),AK099146 (DDBJ%2C Best hit);ORF_evidence=B6TM40 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: small ribosomal subunit (GO:0015935),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S3%2C C-terminal (IPR001351),K Homology%2C type 2 (IPR004044),Ribosomal protein S3%2C eukaryotic/archaeal (IPR005703),K Homology%2C prokaryotic type (IPR009019),K homology domain-like%2C alpha/beta (IPR015946),Ribosomal protein S3%2C conserved site (IPR018280);NIAS_FLcDNA=006-205-G04,J023061B16;Expression=AK061051;TENOR=Os03t0577000-01;KEGG=Os03t0577000-01
Chr03	irgsp1_rep	five_prime_UTR	21099882	21100006	.	-	.	Parent=Os03t0577000-01
Chr03	irgsp1_rep	CDS	21099852	21099881	.	-	0	Parent=Os03t0577000-01
Chr03	irgsp1_rep	CDS	21099454	21099773	.	-	0	Parent=Os03t0577000-01
Chr03	irgsp1_rep	CDS	21098324	21098378	.	-	1	Parent=Os03t0577000-01
Chr03	irgsp1_rep	CDS	21098102	21098233	.	-	0	Parent=Os03t0577000-01
Chr03	irgsp1_rep	CDS	21097866	21098015	.	-	0	Parent=Os03t0577000-01
Chr03	irgsp1_rep	three_prime_UTR	21097594	21097865	.	-	.	Parent=Os03t0577000-01
Chr03	irgsp1_rep	mRNA	21102150	21106012	.	-	.	ID=Os03t0577100-01;Name=Os03t0577100-01;Locus_id=Os03g0577100;Note=Nuf2 family protein.;Transcript_evidence=AK101786 (DDBJ%2C Best hit);ORF_evidence=NP_001150069.1 (RefSeq);GO=Biological Process: mitosis (GO:0007067),Cellular Component: Chromosome%2C centromeric region (GO:0000775);InterPro=Kinetochore protein Nuf2 (IPR005549);NIAS_FLcDNA=J033065E09;Expression=AK101786;TENOR=Os03t0577100-01;KEGG=Os03t0577100-01
Chr03	irgsp1_rep	five_prime_UTR	21105892	21106012	.	-	.	Parent=Os03t0577100-01
Chr03	irgsp1_rep	CDS	21105716	21105891	.	-	0	Parent=Os03t0577100-01
Chr03	irgsp1_rep	CDS	21105301	21105613	.	-	1	Parent=Os03t0577100-01
Chr03	irgsp1_rep	CDS	21105004	21105183	.	-	0	Parent=Os03t0577100-01
Chr03	irgsp1_rep	CDS	21104503	21104592	.	-	0	Parent=Os03t0577100-01
Chr03	irgsp1_rep	CDS	21103915	21104022	.	-	0	Parent=Os03t0577100-01
Chr03	irgsp1_rep	CDS	21103583	21103636	.	-	0	Parent=Os03t0577100-01
Chr03	irgsp1_rep	CDS	21103375	21103489	.	-	0	Parent=Os03t0577100-01
Chr03	irgsp1_rep	CDS	21103108	21103265	.	-	2	Parent=Os03t0577100-01
Chr03	irgsp1_rep	CDS	21102728	21102823	.	-	0	Parent=Os03t0577100-01
Chr03	irgsp1_rep	CDS	21102503	21102635	.	-	0	Parent=Os03t0577100-01
Chr03	irgsp1_rep	CDS	21102371	21102396	.	-	2	Parent=Os03t0577100-01
Chr03	irgsp1_rep	three_prime_UTR	21102150	21102370	.	-	.	Parent=Os03t0577100-01
Chr03	irgsp1_rep	mRNA	21108805	21112091	.	-	.	ID=Os03t0577150-00;Name=Os03t0577150-00;Locus_id=Os03g0577150;Note=Hypothetical gene.;Transcript_evidence=BT016208 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0577150-00;KEGG=Os03t0577150-00
Chr03	irgsp1_rep	five_prime_UTR	21111913	21112091	.	-	.	Parent=Os03t0577150-00
Chr03	irgsp1_rep	five_prime_UTR	21111741	21111777	.	-	.	Parent=Os03t0577150-00
Chr03	irgsp1_rep	CDS	21111613	21111740	.	-	0	Parent=Os03t0577150-00
Chr03	irgsp1_rep	CDS	21111335	21111479	.	-	1	Parent=Os03t0577150-00
Chr03	irgsp1_rep	CDS	21110715	21110777	.	-	0	Parent=Os03t0577150-00
Chr03	irgsp1_rep	three_prime_UTR	21110694	21110714	.	-	.	Parent=Os03t0577150-00
Chr03	irgsp1_rep	three_prime_UTR	21110373	21110539	.	-	.	Parent=Os03t0577150-00
Chr03	irgsp1_rep	three_prime_UTR	21108805	21108951	.	-	.	Parent=Os03t0577150-00
Chr03	irgsp1_rep	mRNA	21108808	21112282	.	+	.	ID=Os03t0577200-01;Name=Os03t0577200-01;Locus_id=Os03g0577200;Note=Similar to Mps one binder kinase activator-like 1A (Mob1 homolog 1A) (Mob1A) (Mob1B) (Protein Mob4A).;Transcript_evidence=AK099558 (DDBJ%2C Best hit),AK061735 (DDBJ%2C Best hit),AK098953 (DDBJ%2C Best hit),AK104547 (DDBJ%2C Best hit);ORF_evidence=B6U9F2 (UniProt);InterPro=Mob1/phocein (IPR005301);NIAS_FLcDNA=J013034B14,001-038-D08,J013058M06,006-305-C06;TENOR=Os03t0577200-01
Chr03	irgsp1_rep	five_prime_UTR	21108808	21108936	.	+	.	Parent=Os03t0577200-01
Chr03	irgsp1_rep	CDS	21108937	21108959	.	+	0	Parent=Os03t0577200-01
Chr03	irgsp1_rep	CDS	21109352	21109400	.	+	1	Parent=Os03t0577200-01
Chr03	irgsp1_rep	CDS	21110431	21110539	.	+	0	Parent=Os03t0577200-01
Chr03	irgsp1_rep	CDS	21110694	21110787	.	+	2	Parent=Os03t0577200-01
Chr03	irgsp1_rep	CDS	21111350	21111483	.	+	1	Parent=Os03t0577200-01
Chr03	irgsp1_rep	CDS	21111616	21111779	.	+	2	Parent=Os03t0577200-01
Chr03	irgsp1_rep	CDS	21111915	21111986	.	+	0	Parent=Os03t0577200-01
Chr03	irgsp1_rep	three_prime_UTR	21111987	21112282	.	+	.	Parent=Os03t0577200-01
Chr03	irgsp1_rep	mRNA	21112715	21113193	.	-	.	ID=Os03t0577300-00;Name=Os03t0577300-00;Locus_id=Os03g0577300;Note=Similar to delta DNA polymerase.;Transcript_evidence=EU954322 (DDBJ);ORF_evidence=NP_001149501.1 (RefSeq);TENOR=Os03t0577300-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	21113135	21113193	.	-	.	Parent=Os03t0577300-00
Chr03	irgsp1_rep	CDS	21112874	21113134	.	-	0	Parent=Os03t0577300-00
Chr03	irgsp1_rep	three_prime_UTR	21112715	21112873	.	-	.	Parent=Os03t0577300-00
Chr03	irgsp1_rep	mRNA	21115784	21116371	.	-	.	ID=Os03t0577350-00;Name=Os03t0577350-00;Locus_id=Os03g0577350;Note=Conserved hypothetical protein.;Transcript_evidence=EU975406 (DDBJ);ORF_evidence=Q67U14 (UniProt);TENOR=Os03t0577350-00
Chr03	irgsp1_rep	CDS	21115784	21116371	.	-	0	Parent=Os03t0577350-00
Chr03	irgsp1_rep	mRNA	21117921	21123379	.	-	.	ID=Os03t0577500-01;Name=Os03t0577500-01;Locus_id=Os03g0577500;Note=Similar to Avr9 elicitor response-like protein.;Transcript_evidence=AK121292 (DDBJ%2C Best hit);ORF_evidence=NP_172009.1 (RefSeq);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Glycosyl transferase%2C family 31 (IPR002659);NIAS_FLcDNA=J023109K01;Expression=AK121292;TENOR=Os03t0577500-01;KEGG=Os03t0577500-01
Chr03	irgsp1_rep	five_prime_UTR	21122968	21123379	.	-	.	Parent=Os03t0577500-01
Chr03	irgsp1_rep	CDS	21122828	21122967	.	-	0	Parent=Os03t0577500-01
Chr03	irgsp1_rep	CDS	21121147	21121243	.	-	1	Parent=Os03t0577500-01
Chr03	irgsp1_rep	CDS	21120941	21120996	.	-	0	Parent=Os03t0577500-01
Chr03	irgsp1_rep	CDS	21120640	21120836	.	-	1	Parent=Os03t0577500-01
Chr03	irgsp1_rep	CDS	21120496	21120559	.	-	2	Parent=Os03t0577500-01
Chr03	irgsp1_rep	CDS	21120256	21120328	.	-	1	Parent=Os03t0577500-01
Chr03	irgsp1_rep	CDS	21120030	21120150	.	-	0	Parent=Os03t0577500-01
Chr03	irgsp1_rep	CDS	21119642	21119729	.	-	2	Parent=Os03t0577500-01
Chr03	irgsp1_rep	CDS	21119438	21119563	.	-	1	Parent=Os03t0577500-01
Chr03	irgsp1_rep	CDS	21119225	21119334	.	-	1	Parent=Os03t0577500-01
Chr03	irgsp1_rep	CDS	21118388	21118536	.	-	2	Parent=Os03t0577500-01
Chr03	irgsp1_rep	three_prime_UTR	21117921	21118387	.	-	.	Parent=Os03t0577500-01
Chr03	irgsp1_rep	mRNA	21117886	21122934	.	-	.	ID=Os03t0577500-02;Name=Os03t0577500-02;Locus_id=Os03g0577500;Note=Similar to predicted protein.;Transcript_evidence=AK119639 (DDBJ%2C Best hit);ORF_evidence=NP_172009.1 (RefSeq);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Glycosyl transferase%2C family 31 (IPR002659);NIAS_FLcDNA=002-130-F06;Expression=AK119639;TENOR=Os03t0577500-02;KEGG=Os03t0577500-02
Chr03	irgsp1_rep	CDS	21122828	21122934	.	-	0	Parent=Os03t0577500-02
Chr03	irgsp1_rep	CDS	21121147	21121243	.	-	1	Parent=Os03t0577500-02
Chr03	irgsp1_rep	CDS	21120941	21120996	.	-	0	Parent=Os03t0577500-02
Chr03	irgsp1_rep	CDS	21120640	21120836	.	-	1	Parent=Os03t0577500-02
Chr03	irgsp1_rep	CDS	21120496	21120559	.	-	2	Parent=Os03t0577500-02
Chr03	irgsp1_rep	CDS	21120256	21120328	.	-	1	Parent=Os03t0577500-02
Chr03	irgsp1_rep	CDS	21120030	21120150	.	-	0	Parent=Os03t0577500-02
Chr03	irgsp1_rep	CDS	21119642	21119729	.	-	2	Parent=Os03t0577500-02
Chr03	irgsp1_rep	CDS	21119438	21119563	.	-	1	Parent=Os03t0577500-02
Chr03	irgsp1_rep	CDS	21119225	21119334	.	-	1	Parent=Os03t0577500-02
Chr03	irgsp1_rep	CDS	21118388	21118536	.	-	2	Parent=Os03t0577500-02
Chr03	irgsp1_rep	three_prime_UTR	21117886	21118387	.	-	.	Parent=Os03t0577500-02
Chr03	irgsp1_rep	mRNA	21143418	21147334	.	+	.	ID=Os03t0577800-01;Name=Os03t0577800-01;Locus_id=Os03g0577800;Note=Similar to OSIGBa0106P14.6 protein.;Transcript_evidence=AK288390 (DDBJ%2C Best hit);ORF_evidence=Q01I24 (UniProt);NIAS_FLcDNA=J090027G18;TENOR=Os03t0577800-01;KEGG=Os03t0577800-01
Chr03	irgsp1_rep	five_prime_UTR	21143418	21144415	.	+	.	Parent=Os03t0577800-01
Chr03	irgsp1_rep	CDS	21144416	21144685	.	+	0	Parent=Os03t0577800-01
Chr03	irgsp1_rep	three_prime_UTR	21144686	21147334	.	+	.	Parent=Os03t0577800-01
Chr03	irgsp1_rep	mRNA	21165043	21170759	.	-	.	ID=Os03t0578200-01;Name=Os03t0578200-01;Locus_id=Os03g0578200;Note=Conserved hypothetical protein.;Transcript_evidence=AK120432 (DDBJ%2C Best hit);ORF_evidence=B8AL51 (UniProt);NIAS_FLcDNA=J013096L16;Expression=AK120432;TENOR=Os03t0578200-01;KEGG=Os03t0578200-01
Chr03	irgsp1_rep	five_prime_UTR	21170678	21170759	.	-	.	Parent=Os03t0578200-01
Chr03	irgsp1_rep	CDS	21170502	21170677	.	-	0	Parent=Os03t0578200-01
Chr03	irgsp1_rep	CDS	21165368	21165443	.	-	1	Parent=Os03t0578200-01
Chr03	irgsp1_rep	three_prime_UTR	21165367	21165367	.	-	.	Parent=Os03t0578200-01
Chr03	irgsp1_rep	three_prime_UTR	21165043	21165200	.	-	.	Parent=Os03t0578200-01
Chr03	irgsp1_rep	mRNA	21165030	21170704	.	-	.	ID=Os03t0578200-02;Name=Os03t0578200-02;Locus_id=Os03g0578200;Note=Conserved hypothetical protein.;Transcript_evidence=AK062224 (DDBJ%2C Best hit);ORF_evidence=B8AL51 (UniProt);NIAS_FLcDNA=001-047-C01;TENOR=Os03t0578200-02
Chr03	irgsp1_rep	five_prime_UTR	21170678	21170704	.	-	.	Parent=Os03t0578200-02
Chr03	irgsp1_rep	CDS	21170502	21170677	.	-	0	Parent=Os03t0578200-02
Chr03	irgsp1_rep	CDS	21165368	21165443	.	-	1	Parent=Os03t0578200-02
Chr03	irgsp1_rep	three_prime_UTR	21165367	21165367	.	-	.	Parent=Os03t0578200-02
Chr03	irgsp1_rep	three_prime_UTR	21165030	21165200	.	-	.	Parent=Os03t0578200-02
Chr03	irgsp1_rep	mRNA	21179901	21184440	.	+	.	ID=Os03t0578300-01;Name=Os03t0578300-01;Locus_id=Os03g0578300;Note=Conserved hypothetical protein.;Transcript_evidence=AK100298 (DDBJ%2C Best hit);ORF_evidence=NP_001064512.1 (RefSeq);NIAS_FLcDNA=J023077J24;Expression=AK100298;TENOR=Os03t0578300-01;KEGG=Os03t0578300-01
Chr03	irgsp1_rep	five_prime_UTR	21179901	21179978	.	+	.	Parent=Os03t0578300-01
Chr03	irgsp1_rep	CDS	21179979	21180263	.	+	0	Parent=Os03t0578300-01
Chr03	irgsp1_rep	three_prime_UTR	21180264	21180512	.	+	.	Parent=Os03t0578300-01
Chr03	irgsp1_rep	three_prime_UTR	21180663	21181586	.	+	.	Parent=Os03t0578300-01
Chr03	irgsp1_rep	three_prime_UTR	21182086	21184440	.	+	.	Parent=Os03t0578300-01
Chr03	irgsp1_rep	mRNA	21198249	21199192	.	+	.	ID=Os03t0578500-01;Name=Os03t0578500-01;Locus_id=Os03g0578500;Note=Hypothetical conserved gene.;Transcript_evidence=AK288113 (DDBJ%2C Best hit);ORF_evidence=Q6UAL5 (UniProt);NIAS_FLcDNA=J080026L23;TENOR=Os03t0578500-01;KEGG=Os03t0578500-01
Chr03	irgsp1_rep	five_prime_UTR	21198249	21198337	.	+	.	Parent=Os03t0578500-01
Chr03	irgsp1_rep	CDS	21198338	21198763	.	+	0	Parent=Os03t0578500-01
Chr03	irgsp1_rep	three_prime_UTR	21198764	21199192	.	+	.	Parent=Os03t0578500-01
Chr03	irgsp1_rep	mRNA	21212377	21214189	.	+	.	ID=Os03t0578900-00;Name=Os03t0578900-00;Locus_id=Os03g0578900;CGSNL Gene Symbol=GAMYBL2;CGSNL Gene Name=GAMYB-LIKE 2;Oryzabase Gene Symbol Synonym(s)=OsGAMYBL2;Note=Similar to MYB1.;Transcript_evidence=BT042537 (DDBJ);ORF_evidence=A1XI89 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);Oryzabase=8711;TENOR=Os03t0578900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	21212377	21212802	.	+	0	Parent=Os03t0578900-00
Chr03	irgsp1_rep	CDS	21212867	21213259	.	+	0	Parent=Os03t0578900-00
Chr03	irgsp1_rep	CDS	21213371	21214138	.	+	0	Parent=Os03t0578900-00
Chr03	irgsp1_rep	three_prime_UTR	21214139	21214189	.	+	.	Parent=Os03t0578900-00
Chr03	irgsp1_rep	mRNA	21224305	21225936	.	-	.	ID=Os03t0579000-01;Name=Os03t0579000-01;Locus_id=Os03g0579000;Note=Peptidase M50 domain containing protein.;Transcript_evidence=AK072995 (DDBJ%2C Best hit);ORF_evidence=A2XIU5 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: protein binding (GO:0005515);InterPro=PDZ/DHR/GLGF (IPR001478),Peptidase M50 (IPR008915);NIAS_FLcDNA=J023147F22;TENOR=Os03t0579000-01
Chr03	irgsp1_rep	five_prime_UTR	21225817	21225936	.	-	.	Parent=Os03t0579000-01
Chr03	irgsp1_rep	CDS	21224566	21225816	.	-	0	Parent=Os03t0579000-01
Chr03	irgsp1_rep	three_prime_UTR	21224305	21224565	.	-	.	Parent=Os03t0579000-01
Chr03	irgsp1_rep	mRNA	21224305	21225859	.	-	.	ID=Os03t0579000-02;Name=Os03t0579000-02;Locus_id=Os03g0579000;Note=Peptidase M50 domain containing protein.;Transcript_evidence=AK061586 (DDBJ%2C Best hit);ORF_evidence=A2XIU5 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: protein binding (GO:0005515);InterPro=PDZ/DHR/GLGF (IPR001478),Peptidase M50 (IPR008915);NIAS_FLcDNA=001-017-C01;TENOR=Os03t0579000-02
Chr03	irgsp1_rep	five_prime_UTR	21225817	21225859	.	-	.	Parent=Os03t0579000-02
Chr03	irgsp1_rep	CDS	21224566	21225816	.	-	0	Parent=Os03t0579000-02
Chr03	irgsp1_rep	three_prime_UTR	21224305	21224565	.	-	.	Parent=Os03t0579000-02
Chr03	irgsp1_rep	mRNA	21229366	21237842	.	+	.	ID=Os03t0579200-00;Name=Os03t0579200-00;Locus_id=Os03g0579200;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10HQ9 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os03t0579200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	21229366	21229734	.	+	0	Parent=Os03t0579200-00
Chr03	irgsp1_rep	CDS	21231442	21231498	.	+	0	Parent=Os03t0579200-00
Chr03	irgsp1_rep	CDS	21232762	21232845	.	+	0	Parent=Os03t0579200-00
Chr03	irgsp1_rep	CDS	21233859	21234278	.	+	0	Parent=Os03t0579200-00
Chr03	irgsp1_rep	CDS	21234715	21237291	.	+	0	Parent=Os03t0579200-00
Chr03	irgsp1_rep	CDS	21237523	21237567	.	+	0	Parent=Os03t0579200-00
Chr03	irgsp1_rep	CDS	21237654	21237842	.	+	0	Parent=Os03t0579200-00
Chr03	irgsp1_rep	mRNA	21238864	21240807	.	-	.	ID=Os03t0579300-00;Name=Os03t0579300-00;Locus_id=Os03g0579300;Oryzabase Gene Name Synonym(s)=Ribosomal protein L19;Note=60S ribosomal protein L19.;Transcript_evidence=Q9SRX2 (UniProt);ORF_evidence=A2XIU7 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L19/L19e (IPR000196),Ribosomal protein L19/L19e%2C domain 1 (IPR015972),Ribosomal protein L19/L19e%2C domain 3 (IPR015974),Ribosomal protein L19/L19e conserved site (IPR023638);Oryzabase=17665;TENOR=Os03t0579300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	21240696	21240807	.	-	0	Parent=Os03t0579300-00
Chr03	irgsp1_rep	CDS	21239710	21239832	.	-	2	Parent=Os03t0579300-00
Chr03	irgsp1_rep	CDS	21239317	21239630	.	-	2	Parent=Os03t0579300-00
Chr03	irgsp1_rep	CDS	21238973	21239019	.	-	0	Parent=Os03t0579300-00
Chr03	irgsp1_rep	CDS	21238864	21238888	.	-	1	Parent=Os03t0579300-00
Chr03	irgsp1_rep	mRNA	21239316	21240824	.	+	.	ID=Os03t0579550-00;Name=Os03t0579550-00;Locus_id=Os03g0579550;Note=Hypothetical gene.;Transcript_evidence=BT016919 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0579550-00
Chr03	irgsp1_rep	five_prime_UTR	21239316	21239502	.	+	.	Parent=Os03t0579550-00
Chr03	irgsp1_rep	CDS	21239503	21239628	.	+	0	Parent=Os03t0579550-00
Chr03	irgsp1_rep	CDS	21239708	21239824	.	+	0	Parent=Os03t0579550-00
Chr03	irgsp1_rep	CDS	21240689	21240824	.	+	0	Parent=Os03t0579550-00
Chr03	irgsp1_rep	mRNA	21267989	21273094	.	-	.	ID=Os03t0579800-01;Name=Os03t0579800-01;Locus_id=Os03g0579800;Note=Non-protein coding transcript.;Transcript_evidence=AK109588 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-137-B08;Oryzabase=20188;TENOR=Os03t0579800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	exon	21272875	21273094	.	-	.	Parent=Os03t0579800-01
Chr03	irgsp1_rep	exon	21270006	21270440	.	-	.	Parent=Os03t0579800-01
Chr03	irgsp1_rep	exon	21267989	21268946	.	-	.	Parent=Os03t0579800-01
Chr03	irgsp1_rep	mRNA	21271431	21272411	.	+	.	ID=Os03t0579900-01;Name=Os03t0579900-01;Locus_id=Os03g0579900;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=AK108792 (DDBJ%2C Best hit);ORF_evidence=Q10HQ9 (UniProt);NIAS_FLcDNA=002-151-B08;Expression=AK108792;TENOR=Os03t0579900-01;KEGG=Os03t0579900-01
Chr03	irgsp1_rep	five_prime_UTR	21271431	21271432	.	+	.	Parent=Os03t0579900-01
Chr03	irgsp1_rep	CDS	21271433	21271927	.	+	0	Parent=Os03t0579900-01
Chr03	irgsp1_rep	CDS	21272072	21272275	.	+	0	Parent=Os03t0579900-01
Chr03	irgsp1_rep	three_prime_UTR	21272276	21272411	.	+	.	Parent=Os03t0579900-01
Chr03	irgsp1_rep	mRNA	21275422	21276198	.	-	.	ID=Os03t0580200-01;Name=Os03t0580200-01;Locus_id=Os03g0580200;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK107849 (DDBJ%2C Best hit);ORF_evidence=NP_001147457.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=002-134-A07;Expression=AK107849;TENOR=Os03t0580200-01;KEGG=Os03t0580200-01
Chr03	irgsp1_rep	five_prime_UTR	21276096	21276198	.	-	.	Parent=Os03t0580200-01
Chr03	irgsp1_rep	CDS	21275601	21276095	.	-	0	Parent=Os03t0580200-01
Chr03	irgsp1_rep	three_prime_UTR	21275422	21275600	.	-	.	Parent=Os03t0580200-01
Chr03	irgsp1_rep	mRNA	21306705	21313520	.	-	.	ID=Os03t0580800-01;Name=Os03t0580800-01;Locus_id=Os03g0580800;CGSNL Gene Symbol=GELP51;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 51;Oryzabase Gene Symbol Synonym(s)=OsGELP51;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 51;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK070980 (DDBJ%2C Best hit);ORF_evidence=NP_001147457.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=J023073A07;Oryzabase=11001;Expression=AK070980;TENOR=Os03t0580800-01;KEGG=Os03t0580800-01
Chr03	irgsp1_rep	five_prime_UTR	21313502	21313520	.	-	.	Parent=Os03t0580800-01
Chr03	irgsp1_rep	CDS	21313204	21313501	.	-	0	Parent=Os03t0580800-01
Chr03	irgsp1_rep	CDS	21310201	21310331	.	-	2	Parent=Os03t0580800-01
Chr03	irgsp1_rep	CDS	21309407	21309646	.	-	0	Parent=Os03t0580800-01
Chr03	irgsp1_rep	CDS	21307614	21307863	.	-	0	Parent=Os03t0580800-01
Chr03	irgsp1_rep	CDS	21306962	21307182	.	-	2	Parent=Os03t0580800-01
Chr03	irgsp1_rep	three_prime_UTR	21306705	21306961	.	-	.	Parent=Os03t0580800-01
Chr03	irgsp1_rep	mRNA	21334814	21337846	.	+	.	ID=Os03t0581100-01;Name=Os03t0581100-01;Locus_id=Os03g0581100;Oryzabase Gene Symbol Synonym(s)=OS-CAD;Oryzabase Gene Name Synonym(s)=cinnamoyl alcohol dehydrogenase;Note=Hypothetical conserved gene.;Transcript_evidence=AK065977 (DDBJ%2C Best hit);ORF_evidence=Q10HP5 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527);NIAS_FLcDNA=J013049I20;Oryzabase=15159;Expression=AK065977;TENOR=Os03t0581100-01;KEGG=Os03t0581100-01
Chr03	irgsp1_rep	five_prime_UTR	21334814	21335965	.	+	.	Parent=Os03t0581100-01
Chr03	irgsp1_rep	CDS	21335966	21336562	.	+	0	Parent=Os03t0581100-01
Chr03	irgsp1_rep	three_prime_UTR	21336563	21337846	.	+	.	Parent=Os03t0581100-01
Chr03	irgsp1_rep	mRNA	21338861	21340313	.	-	.	ID=Os03t0581200-01;Name=Os03t0581200-01;Locus_id=Os03g0581200;Note=Non-protein coding transcript.;Transcript_evidence=AK106621 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-113-B02;TENOR=Os03t0581200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	exon	21338861	21340313	.	-	.	Parent=Os03t0581200-01
Chr03	irgsp1_rep	mRNA	21338369	21340262	.	-	.	ID=Os03t0581200-02;Name=Os03t0581200-02;Locus_id=Os03g0581200;Note=Hypothetical conserved gene.;Transcript_evidence=AK105747 (DDBJ%2C Best hit);ORF_evidence=B9FP82 (UniProt);NIAS_FLcDNA=001-202-B07;Expression=AK105747;TENOR=Os03t0581200-02;KEGG=Os03t0581200-02
Chr03	irgsp1_rep	five_prime_UTR	21338681	21340262	.	-	.	Parent=Os03t0581200-02
Chr03	irgsp1_rep	CDS	21338543	21338680	.	-	0	Parent=Os03t0581200-02
Chr03	irgsp1_rep	three_prime_UTR	21338369	21338542	.	-	.	Parent=Os03t0581200-02
Chr03	irgsp1_rep	mRNA	21338860	21340239	.	-	.	ID=Os03t0581200-03;Name=Os03t0581200-03;Locus_id=Os03g0581200;Note=Non-protein coding transcript.;Transcript_evidence=AK122022 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J033111O22;TENOR=Os03t0581200-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	exon	21338860	21340239	.	-	.	Parent=Os03t0581200-03
Chr03	irgsp1_rep	mRNA	21338354	21340206	.	-	.	ID=Os03t0581200-04;Name=Os03t0581200-04;Locus_id=Os03g0581200;Note=Hypothetical conserved gene.;Transcript_evidence=AK073069 (DDBJ%2C Best hit);ORF_evidence=B9FP82 (UniProt);NIAS_FLcDNA=J033004J14;Expression=AK073069;TENOR=Os03t0581200-04;KEGG=Os03t0581200-04
Chr03	irgsp1_rep	five_prime_UTR	21338681	21340206	.	-	.	Parent=Os03t0581200-04
Chr03	irgsp1_rep	CDS	21338543	21338680	.	-	0	Parent=Os03t0581200-04
Chr03	irgsp1_rep	three_prime_UTR	21338354	21338542	.	-	.	Parent=Os03t0581200-04
Chr03	irgsp1_rep	mRNA	21353518	21356813	.	+	.	ID=Os03t0581400-00;Name=Os03t0581400-00;Locus_id=Os03g0581400;CGSNL Gene Symbol=GELP52;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 52;Oryzabase Gene Symbol Synonym(s)=OsGELP52;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 52;Note=Similar to anther-specific proline-rich protein APG.;Transcript_evidence=BT067339 (DDBJ);ORF_evidence=NP_001147457.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);Oryzabase=11002;TENOR=Os03t0581400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	21353518	21353800	.	+	0	Parent=Os03t0581400-00
Chr03	irgsp1_rep	CDS	21354082	21354200	.	+	2	Parent=Os03t0581400-00
Chr03	irgsp1_rep	CDS	21354325	21354603	.	+	0	Parent=Os03t0581400-00
Chr03	irgsp1_rep	CDS	21354876	21355125	.	+	0	Parent=Os03t0581400-00
Chr03	irgsp1_rep	CDS	21356593	21356813	.	+	2	Parent=Os03t0581400-00
Chr03	irgsp1_rep	mRNA	21363967	21368868	.	+	.	ID=Os03t0581600-01;Name=Os03t0581600-01;Locus_id=Os03g0581600;CGSNL Gene Symbol=MORF3;CGSNL Gene Name=MULTIPLE ORGANELLAR RNA EDITING FACTOR 3;Oryzabase Gene Symbol Synonym(s)=OsMORF3;Oryzabase Gene Name Synonym(s)=multiple organellar RNA editing factor 3;Note=Similar to DAG protein.;Transcript_evidence=AK241604 (DDBJ%2C Best hit);ORF_evidence=NP_001152375.1 (RefSeq);InterPro=Peptidase S8%2C subtilisin-related (IPR015500);NIAS_FLcDNA=J065183O12;Oryzabase=22398;TENOR=Os03t0581600-01;KEGG=Os03t0581600-01
Chr03	irgsp1_rep	five_prime_UTR	21363967	21364247	.	+	.	Parent=Os03t0581600-01
Chr03	irgsp1_rep	CDS	21364248	21364603	.	+	0	Parent=Os03t0581600-01
Chr03	irgsp1_rep	CDS	21365986	21366083	.	+	1	Parent=Os03t0581600-01
Chr03	irgsp1_rep	CDS	21366175	21366240	.	+	2	Parent=Os03t0581600-01
Chr03	irgsp1_rep	CDS	21368498	21368664	.	+	2	Parent=Os03t0581600-01
Chr03	irgsp1_rep	three_prime_UTR	21368665	21368868	.	+	.	Parent=Os03t0581600-01
Chr03	irgsp1_rep	mRNA	21371185	21375263	.	+	.	ID=Os03t0581650-00;Name=Os03t0581650-00;Locus_id=Os03g0581650;Note=Conserved hypothetical protein.;Transcript_evidence=AK363481 (DDBJ);ORF_evidence=Q75ID7 (UniProt);TENOR=Os03t0581650-00
Chr03	irgsp1_rep	five_prime_UTR	21371185	21371245	.	+	.	Parent=Os03t0581650-00
Chr03	irgsp1_rep	CDS	21371246	21371329	.	+	0	Parent=Os03t0581650-00
Chr03	irgsp1_rep	CDS	21371771	21371896	.	+	0	Parent=Os03t0581650-00
Chr03	irgsp1_rep	CDS	21375190	21375246	.	+	0	Parent=Os03t0581650-00
Chr03	irgsp1_rep	three_prime_UTR	21375247	21375263	.	+	.	Parent=Os03t0581650-00
Chr03	irgsp1_rep	mRNA	21375539	21375773	.	+	.	ID=Os03t0581701-00;Name=Os03t0581701-00;Locus_id=Os03g0581701;Note=Non-protein coding transcript.;Transcript_evidence=CT835089 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os03t0581701-00
Chr03	irgsp1_rep	exon	21375539	21375773	.	+	.	Parent=Os03t0581701-00
Chr03	irgsp1_rep	mRNA	21378149	21382083	.	+	.	ID=Os03t0581800-01;Name=Os03t0581800-01;Locus_id=Os03g0581800;Note=Conserved hypothetical protein.;Transcript_evidence=AK059201 (DDBJ%2C Best hit),AK121839 (DDBJ%2C Best hit);ORF_evidence=B8AL63 (UniProt);NIAS_FLcDNA=001-024-A09,J033100N18;Expression=AK059201;TENOR=Os03t0581800-01;KEGG=Os03t0581800-01
Chr03	irgsp1_rep	five_prime_UTR	21378149	21378183	.	+	.	Parent=Os03t0581800-01
Chr03	irgsp1_rep	CDS	21378184	21378277	.	+	0	Parent=Os03t0581800-01
Chr03	irgsp1_rep	CDS	21378587	21378657	.	+	2	Parent=Os03t0581800-01
Chr03	irgsp1_rep	CDS	21380382	21380471	.	+	0	Parent=Os03t0581800-01
Chr03	irgsp1_rep	CDS	21381861	21381881	.	+	0	Parent=Os03t0581800-01
Chr03	irgsp1_rep	three_prime_UTR	21381882	21382083	.	+	.	Parent=Os03t0581800-01
Chr03	irgsp1_rep	mRNA	21392897	21394721	.	+	.	ID=Os03t0582000-01;Name=Os03t0582000-01;Locus_id=Os03g0582000;Note=Similar to Glutamate formiminotransferase.;Transcript_evidence=AK070707 (DDBJ%2C Best hit);ORF_evidence=B6UFR4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: folic acid binding (GO:0005542),Molecular Function: transferase activity (GO:0016740);InterPro=Formiminotransferase%2C N-terminal subdomain (IPR012886),Formiminotransferas%2C N- and C-terminal subdomains (IPR022384);NIAS_FLcDNA=J023063J02;TENOR=Os03t0582000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	21392897	21393616	.	+	.	Parent=Os03t0582000-01
Chr03	irgsp1_rep	CDS	21393617	21394016	.	+	0	Parent=Os03t0582000-01
Chr03	irgsp1_rep	CDS	21394103	21394614	.	+	2	Parent=Os03t0582000-01
Chr03	irgsp1_rep	three_prime_UTR	21394615	21394721	.	+	.	Parent=Os03t0582000-01
Chr03	irgsp1_rep	mRNA	21393006	21394893	.	+	.	ID=Os03t0582000-02;Name=Os03t0582000-02;Locus_id=Os03g0582000;Note=Formiminotransferase%2C N-terminal domain containing protein.;Transcript_evidence=AK120119 (DDBJ%2C Best hit);ORF_evidence=B6UFR4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: folic acid binding (GO:0005542),Molecular Function: transferase activity (GO:0016740);InterPro=Formiminotransferase%2C N-terminal subdomain (IPR012886),Formiminotransferas%2C N- and C-terminal subdomains (IPR022384);NIAS_FLcDNA=J013025N19;Expression=AK120119;TENOR=Os03t0582000-02;KEGG=Os03t0582000-02
Chr03	irgsp1_rep	five_prime_UTR	21393006	21393052	.	+	.	Parent=Os03t0582000-02
Chr03	irgsp1_rep	CDS	21393053	21393079	.	+	0	Parent=Os03t0582000-02
Chr03	irgsp1_rep	CDS	21393599	21394016	.	+	0	Parent=Os03t0582000-02
Chr03	irgsp1_rep	CDS	21394103	21394614	.	+	2	Parent=Os03t0582000-02
Chr03	irgsp1_rep	three_prime_UTR	21394615	21394893	.	+	.	Parent=Os03t0582000-02
Chr03	irgsp1_rep	mRNA	21394160	21394721	.	+	.	ID=Os03t0582000-03;Name=Os03t0582000-03;Locus_id=Os03g0582000;Note=Similar to Glutamate formiminotransferase.;Transcript_evidence=AK058458 (DDBJ%2C Best hit);ORF_evidence=B6UFR4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: folic acid binding (GO:0005542),Molecular Function: transferase activity (GO:0016740);InterPro=Formiminotransferase%2C N-terminal subdomain (IPR012886);NIAS_FLcDNA=001-015-H11;Expression=AK058458;TENOR=Os03t0582000-03;KEGG=Os03t0582000-03
Chr03	irgsp1_rep	five_prime_UTR	21394160	21394161	.	+	.	Parent=Os03t0582000-03
Chr03	irgsp1_rep	CDS	21394162	21394614	.	+	0	Parent=Os03t0582000-03
Chr03	irgsp1_rep	three_prime_UTR	21394615	21394721	.	+	.	Parent=Os03t0582000-03
Chr03	irgsp1_rep	mRNA	21409003	21411259	.	-	.	ID=Os03t0582100-01;Name=Os03t0582100-01;Locus_id=Os03g0582100;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK063357 (DDBJ%2C Best hit);ORF_evidence=Q75IC8 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-114-C07;Expression=AK063357;TENOR=Os03t0582100-01;KEGG=Os03t0582100-01
Chr03	irgsp1_rep	five_prime_UTR	21411238	21411259	.	-	.	Parent=Os03t0582100-01
Chr03	irgsp1_rep	CDS	21410646	21411237	.	-	0	Parent=Os03t0582100-01
Chr03	irgsp1_rep	CDS	21409273	21410570	.	-	2	Parent=Os03t0582100-01
Chr03	irgsp1_rep	three_prime_UTR	21409003	21409272	.	-	.	Parent=Os03t0582100-01
Chr03	irgsp1_rep	mRNA	21416192	21420237	.	-	.	ID=Os03t0582200-01;Name=Os03t0582200-01;Locus_id=Os03g0582200;Note=SCAMP family protein.;Transcript_evidence=AK058432 (DDBJ%2C Best hit);ORF_evidence=Q75IC7 (UniProt);GO=Biological Process: protein transport (GO:0015031),Cellular Component: integral to membrane (GO:0016021);InterPro=SCAMP (IPR007273);NIAS_FLcDNA=001-015-E12;Expression=AK058432;TENOR=Os03t0582200-01;KEGG=Os03t0582200-01
Chr03	irgsp1_rep	five_prime_UTR	21419979	21420237	.	-	.	Parent=Os03t0582200-01
Chr03	irgsp1_rep	CDS	21419910	21419978	.	-	0	Parent=Os03t0582200-01
Chr03	irgsp1_rep	CDS	21418876	21418941	.	-	0	Parent=Os03t0582200-01
Chr03	irgsp1_rep	CDS	21418665	21418778	.	-	0	Parent=Os03t0582200-01
Chr03	irgsp1_rep	CDS	21418511	21418573	.	-	0	Parent=Os03t0582200-01
Chr03	irgsp1_rep	CDS	21418335	21418368	.	-	0	Parent=Os03t0582200-01
Chr03	irgsp1_rep	CDS	21418115	21418237	.	-	2	Parent=Os03t0582200-01
Chr03	irgsp1_rep	CDS	21417872	21417934	.	-	2	Parent=Os03t0582200-01
Chr03	irgsp1_rep	CDS	21417645	21417738	.	-	2	Parent=Os03t0582200-01
Chr03	irgsp1_rep	CDS	21417465	21417510	.	-	1	Parent=Os03t0582200-01
Chr03	irgsp1_rep	CDS	21417288	21417355	.	-	0	Parent=Os03t0582200-01
Chr03	irgsp1_rep	CDS	21416948	21416996	.	-	1	Parent=Os03t0582200-01
Chr03	irgsp1_rep	CDS	21416672	21416737	.	-	0	Parent=Os03t0582200-01
Chr03	irgsp1_rep	CDS	21416472	21416558	.	-	0	Parent=Os03t0582200-01
Chr03	irgsp1_rep	three_prime_UTR	21416192	21416471	.	-	.	Parent=Os03t0582200-01
Chr03	irgsp1_rep	mRNA	21416155	21420103	.	-	.	ID=Os03t0582200-02;Name=Os03t0582200-02;Locus_id=Os03g0582200;Note=SCAMP family protein.;Transcript_evidence=AK099288 (DDBJ%2C Best hit);ORF_evidence=Q75IC7 (UniProt);GO=Biological Process: protein transport (GO:0015031),Cellular Component: integral to membrane (GO:0016021);InterPro=SCAMP (IPR007273);NIAS_FLcDNA=J023127B13;Expression=AK099288;TENOR=Os03t0582200-02;KEGG=Os03t0582200-02
Chr03	irgsp1_rep	five_prime_UTR	21419979	21420103	.	-	.	Parent=Os03t0582200-02
Chr03	irgsp1_rep	CDS	21419910	21419978	.	-	0	Parent=Os03t0582200-02
Chr03	irgsp1_rep	CDS	21418876	21418941	.	-	0	Parent=Os03t0582200-02
Chr03	irgsp1_rep	CDS	21418665	21418778	.	-	0	Parent=Os03t0582200-02
Chr03	irgsp1_rep	CDS	21418511	21418573	.	-	0	Parent=Os03t0582200-02
Chr03	irgsp1_rep	CDS	21418335	21418368	.	-	0	Parent=Os03t0582200-02
Chr03	irgsp1_rep	CDS	21418115	21418237	.	-	2	Parent=Os03t0582200-02
Chr03	irgsp1_rep	CDS	21417872	21417934	.	-	2	Parent=Os03t0582200-02
Chr03	irgsp1_rep	CDS	21417645	21417738	.	-	2	Parent=Os03t0582200-02
Chr03	irgsp1_rep	CDS	21417465	21417510	.	-	1	Parent=Os03t0582200-02
Chr03	irgsp1_rep	CDS	21417288	21417355	.	-	0	Parent=Os03t0582200-02
Chr03	irgsp1_rep	CDS	21416948	21416996	.	-	1	Parent=Os03t0582200-02
Chr03	irgsp1_rep	CDS	21416672	21416737	.	-	0	Parent=Os03t0582200-02
Chr03	irgsp1_rep	CDS	21416472	21416558	.	-	0	Parent=Os03t0582200-02
Chr03	irgsp1_rep	three_prime_UTR	21416155	21416471	.	-	.	Parent=Os03t0582200-02
Chr03	irgsp1_rep	mRNA	21420814	21421069	.	-	.	ID=Os03t0582300-01;Name=Os03t0582300-01;Locus_id=Os03g0582300;CGSNL Gene Symbol=AM42;CGSNL Gene Name=ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 42;Oryzabase Gene Symbol Synonym(s)=AM42;Note=Similar to SC3 protein.;Transcript_evidence=AK121148 (DDBJ%2C Best hit);ORF_evidence=NP_001150460.1 (RefSeq);NIAS_FLcDNA=J023078G19;Oryzabase=8196;TENOR=Os03t0582300-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	21421060	21421069	.	-	.	Parent=Os03t0582300-01
Chr03	irgsp1_rep	CDS	21420949	21421059	.	-	0	Parent=Os03t0582300-01
Chr03	irgsp1_rep	three_prime_UTR	21420814	21420948	.	-	.	Parent=Os03t0582300-01
Chr03	irgsp1_rep	mRNA	21428521	21429270	.	-	.	ID=Os03t0582400-01;Name=Os03t0582400-01;Locus_id=Os03g0582400;RAP-DB Gene Symbol Synonym(s)=MADS87%2C OsMADS87;RAP-DB Gene Name Synonym(s)=MADS BOX GENE 87%2C MADS box gene87%2C MADS box gene 87%2C MADS-box transcription factor 87;CGSNL Gene Symbol=MADS87;CGSNL Gene Name=MADS BOX GENE 87;Oryzabase Gene Symbol Synonym(s)=OsMADS87;Oryzabase Gene Name Synonym(s)=MADS box gene87%2C MADS box gene 87%2C MADS-box transcription factor 87;Note=MADS box transcription factor%2C Regulation of seed size%2C Heat stress response during reproductive development;Transcript_evidence=Inferred from literature;ORF_evidence=Q75IC5;GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box (IPR002100);Manual Curation=May 13%2C 2016;Literature_PMID=26936896,17640358;Oryzabase=12323
Chr03	irgsp1_rep	CDS	21428521	21429270	.	-	0	Parent=Os03t0582400-01
Chr03	irgsp1_rep	mRNA	21428825	21429391	.	+	.	ID=Os03t0582550-00;Name=Os03t0582550-00;Locus_id=Os03g0582550;Note=Hypothetical protein.;Transcript_evidence=AK372761 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0582550-00
Chr03	irgsp1_rep	five_prime_UTR	21428825	21428869	.	+	.	Parent=Os03t0582550-00
Chr03	irgsp1_rep	CDS	21428870	21429313	.	+	0	Parent=Os03t0582550-00
Chr03	irgsp1_rep	three_prime_UTR	21429314	21429391	.	+	.	Parent=Os03t0582550-00
Chr03	irgsp1_rep	mRNA	21453383	21454733	.	+	.	ID=Os03t0582800-00;Name=Os03t0582800-00;Locus_id=Os03g0582800;Note=Conserved hypothetical protein.;Transcript_evidence=AK356625 (DDBJ);ORF_evidence=Q75IC2 (UniProt);TENOR=Os03t0582800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	21453383	21454585	.	+	0	Parent=Os03t0582800-00
Chr03	irgsp1_rep	three_prime_UTR	21454586	21454733	.	+	.	Parent=Os03t0582800-00
Chr03	irgsp1_rep	mRNA	21457124	21457731	.	+	.	ID=Os03t0582900-01;Name=Os03t0582900-01;Locus_id=Os03g0582900;Note=Hypothetical gene.;Transcript_evidence=AK062965 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=001-109-D10;Expression=AK062965;TENOR=Os03t0582900-01;KEGG=Os03t0582900-01
Chr03	irgsp1_rep	CDS	21457124	21457333	.	+	0	Parent=Os03t0582900-01
Chr03	irgsp1_rep	three_prime_UTR	21457334	21457731	.	+	.	Parent=Os03t0582900-01
Chr03	irgsp1_rep	mRNA	21457462	21458020	.	+	.	ID=Os03t0582900-02;Name=Os03t0582900-02;Locus_id=Os03g0582900;Note=Non-protein coding transcript.;Transcript_evidence=AK062644 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-105-D12;TENOR=Os03t0582900-02
Chr03	irgsp1_rep	exon	21457462	21457543	.	+	.	Parent=Os03t0582900-02
Chr03	irgsp1_rep	exon	21457664	21458020	.	+	.	Parent=Os03t0582900-02
Chr03	irgsp1_rep	mRNA	21458177	21461845	.	-	.	ID=Os03t0583000-00;Name=Os03t0583000-00;Locus_id=Os03g0583000;Note=Conserved hypothetical protein.;Transcript_evidence=CT835181 (DDBJ%2C Best hit);ORF_evidence=Q75IC1 (UniProt);TENOR=Os03t0583000-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	21461241	21461845	.	-	.	Parent=Os03t0583000-00
Chr03	irgsp1_rep	five_prime_UTR	21461042	21461127	.	-	.	Parent=Os03t0583000-00
Chr03	irgsp1_rep	CDS	21460948	21461041	.	-	0	Parent=Os03t0583000-00
Chr03	irgsp1_rep	CDS	21460561	21460665	.	-	2	Parent=Os03t0583000-00
Chr03	irgsp1_rep	CDS	21460068	21460152	.	-	2	Parent=Os03t0583000-00
Chr03	irgsp1_rep	CDS	21459670	21459697	.	-	1	Parent=Os03t0583000-00
Chr03	irgsp1_rep	three_prime_UTR	21459533	21459669	.	-	.	Parent=Os03t0583000-00
Chr03	irgsp1_rep	three_prime_UTR	21458177	21458479	.	-	.	Parent=Os03t0583000-00
Chr03	irgsp1_rep	mRNA	21490216	21493292	.	+	.	ID=Os03t0583700-00;Name=Os03t0583700-00;Locus_id=Os03g0583700;Note=Similar to Proteasome maturation factor UMP1 family protein.;Transcript_evidence=BT016426 (DDBJ);ORF_evidence=B4FLC7 (UniProt);InterPro=Proteasome maturation factor UMP1 (IPR008012);TENOR=Os03t0583700-00;KEGG=Os03t0583700-00
Chr03	irgsp1_rep	five_prime_UTR	21490216	21490258	.	+	.	Parent=Os03t0583700-00
Chr03	irgsp1_rep	CDS	21490259	21490384	.	+	0	Parent=Os03t0583700-00
Chr03	irgsp1_rep	CDS	21490476	21490576	.	+	0	Parent=Os03t0583700-00
Chr03	irgsp1_rep	CDS	21492354	21492451	.	+	1	Parent=Os03t0583700-00
Chr03	irgsp1_rep	CDS	21493113	21493213	.	+	2	Parent=Os03t0583700-00
Chr03	irgsp1_rep	three_prime_UTR	21493214	21493292	.	+	.	Parent=Os03t0583700-00
Chr03	irgsp1_rep	mRNA	21498173	21500536	.	+	.	ID=Os03t0583800-01;Name=Os03t0583800-01;Locus_id=Os03g0583800;Note=Mpv17/PMP22 family protein.;Transcript_evidence=AK099233 (DDBJ%2C Best hit),AK064786 (DDBJ%2C Best hit);ORF_evidence=NP_001151402.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Mpv17/PMP22 (IPR007248);NIAS_FLcDNA=J013098D10,J013000B17;Expression=AK099233;TENOR=Os03t0583800-01;KEGG=Os03t0583800-01
Chr03	irgsp1_rep	five_prime_UTR	21498173	21498237	.	+	.	Parent=Os03t0583800-01
Chr03	irgsp1_rep	CDS	21498238	21498690	.	+	0	Parent=Os03t0583800-01
Chr03	irgsp1_rep	CDS	21498830	21498970	.	+	0	Parent=Os03t0583800-01
Chr03	irgsp1_rep	CDS	21499068	21499181	.	+	0	Parent=Os03t0583800-01
Chr03	irgsp1_rep	CDS	21499278	21499451	.	+	0	Parent=Os03t0583800-01
Chr03	irgsp1_rep	CDS	21499987	21500102	.	+	0	Parent=Os03t0583800-01
Chr03	irgsp1_rep	CDS	21500218	21500281	.	+	1	Parent=Os03t0583800-01
Chr03	irgsp1_rep	CDS	21500367	21500381	.	+	0	Parent=Os03t0583800-01
Chr03	irgsp1_rep	three_prime_UTR	21500382	21500536	.	+	.	Parent=Os03t0583800-01
Chr03	irgsp1_rep	mRNA	21500980	21515569	.	-	.	ID=Os03t0583900-01;Name=Os03t0583900-01;Locus_id=Os03g0583900;CGSNL Gene Symbol=DCL2A;CGSNL Gene Name=DICER-LIKE 2A;Oryzabase Gene Symbol Synonym(s)=OsDCL2a%2C OsDCL2;Oryzabase Gene Name Synonym(s)=Endoribonuclease Dicer homolog 2a%2C Dicer-like protein 2a;Note=DEAD-like helicase%2C N-terminal domain containing protein.;Transcript_evidence=AK072334 (DDBJ%2C Best hit);ORF_evidence=Q10HL3 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723),Molecular Function: double-stranded RNA binding (GO:0003725),Molecular Function: helicase activity (GO:0004386),Molecular Function: ribonuclease III activity (GO:0004525),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026),Molecular Function: endoribonuclease activity%2C producing 5'-phosphomonoesters (GO:0016891);InterPro=Ribonuclease III (IPR000999),Double-stranded RNA-binding (IPR001159),Helicase%2C C-terminal (IPR001650),Argonaute/Dicer protein%2C PAZ (IPR003100),Dicer double-stranded RNA-binding fold (IPR005034),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J023044C15;Oryzabase=8307;Expression=AK072334;TENOR=Os03t0583900-01;KEGG=Os03t0583900-01 (EC:3.1.26.-)
Chr03	irgsp1_rep	five_prime_UTR	21515271	21515569	.	-	.	Parent=Os03t0583900-01
Chr03	irgsp1_rep	CDS	21515164	21515270	.	-	0	Parent=Os03t0583900-01
Chr03	irgsp1_rep	CDS	21514620	21515049	.	-	1	Parent=Os03t0583900-01
Chr03	irgsp1_rep	CDS	21514256	21514343	.	-	0	Parent=Os03t0583900-01
Chr03	irgsp1_rep	CDS	21514114	21514175	.	-	2	Parent=Os03t0583900-01
Chr03	irgsp1_rep	CDS	21513853	21513993	.	-	0	Parent=Os03t0583900-01
Chr03	irgsp1_rep	CDS	21512669	21512794	.	-	0	Parent=Os03t0583900-01
Chr03	irgsp1_rep	CDS	21512461	21512593	.	-	0	Parent=Os03t0583900-01
Chr03	irgsp1_rep	CDS	21512031	21512121	.	-	2	Parent=Os03t0583900-01
Chr03	irgsp1_rep	CDS	21510264	21510456	.	-	1	Parent=Os03t0583900-01
Chr03	irgsp1_rep	CDS	21509989	21510150	.	-	0	Parent=Os03t0583900-01
Chr03	irgsp1_rep	CDS	21509148	21509365	.	-	0	Parent=Os03t0583900-01
Chr03	irgsp1_rep	CDS	21508813	21509039	.	-	1	Parent=Os03t0583900-01
Chr03	irgsp1_rep	CDS	21508030	21508298	.	-	2	Parent=Os03t0583900-01
Chr03	irgsp1_rep	CDS	21507517	21507935	.	-	0	Parent=Os03t0583900-01
Chr03	irgsp1_rep	CDS	21507314	21507417	.	-	1	Parent=Os03t0583900-01
Chr03	irgsp1_rep	CDS	21506140	21506336	.	-	2	Parent=Os03t0583900-01
Chr03	irgsp1_rep	CDS	21505144	21505353	.	-	0	Parent=Os03t0583900-01
Chr03	irgsp1_rep	CDS	21503842	21504255	.	-	0	Parent=Os03t0583900-01
Chr03	irgsp1_rep	CDS	21502017	21502295	.	-	0	Parent=Os03t0583900-01
Chr03	irgsp1_rep	CDS	21501153	21501515	.	-	0	Parent=Os03t0583900-01
Chr03	irgsp1_rep	three_prime_UTR	21500980	21501152	.	-	.	Parent=Os03t0583900-01
Chr03	irgsp1_rep	mRNA	21502236	21515440	.	-	.	ID=Os03t0583900-02;Name=Os03t0583900-02;Locus_id=Os03g0583900;CGSNL Gene Symbol=DCL2A;CGSNL Gene Name=DICER-LIKE 2A;Oryzabase Gene Symbol Synonym(s)=OsDCL2a%2C OsDCL2;Oryzabase Gene Name Synonym(s)=Endoribonuclease Dicer homolog 2a%2C Dicer-like protein 2a;Note=Similar to Endoribonuclease Dicer homolog 2a.;Transcript_evidence=AK066278 (DDBJ%2C Best hit);ORF_evidence=Q10HL3 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723),Molecular Function: helicase activity (GO:0004386),Molecular Function: ribonuclease III activity (GO:0004525),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026),Molecular Function: endoribonuclease activity%2C producing 5'-phosphomonoesters (GO:0016891);InterPro=Ribonuclease III (IPR000999),Helicase%2C C-terminal (IPR001650),Argonaute/Dicer protein%2C PAZ (IPR003100),Dicer double-stranded RNA-binding fold (IPR005034),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J013062H12;Oryzabase=8307;Expression=AK066278;TENOR=Os03t0583900-02;KEGG=Os03t0583900-02 (EC:3.1.26.-)
Chr03	irgsp1_rep	five_prime_UTR	21515271	21515440	.	-	.	Parent=Os03t0583900-02
Chr03	irgsp1_rep	CDS	21515164	21515270	.	-	0	Parent=Os03t0583900-02
Chr03	irgsp1_rep	CDS	21514620	21515049	.	-	1	Parent=Os03t0583900-02
Chr03	irgsp1_rep	CDS	21514256	21514343	.	-	0	Parent=Os03t0583900-02
Chr03	irgsp1_rep	CDS	21514114	21514175	.	-	2	Parent=Os03t0583900-02
Chr03	irgsp1_rep	CDS	21513853	21513993	.	-	0	Parent=Os03t0583900-02
Chr03	irgsp1_rep	CDS	21512669	21512794	.	-	0	Parent=Os03t0583900-02
Chr03	irgsp1_rep	CDS	21512461	21512593	.	-	0	Parent=Os03t0583900-02
Chr03	irgsp1_rep	CDS	21512031	21512121	.	-	2	Parent=Os03t0583900-02
Chr03	irgsp1_rep	CDS	21510264	21510456	.	-	1	Parent=Os03t0583900-02
Chr03	irgsp1_rep	CDS	21509989	21510150	.	-	0	Parent=Os03t0583900-02
Chr03	irgsp1_rep	CDS	21509148	21509365	.	-	0	Parent=Os03t0583900-02
Chr03	irgsp1_rep	CDS	21508813	21509039	.	-	1	Parent=Os03t0583900-02
Chr03	irgsp1_rep	CDS	21508030	21508298	.	-	2	Parent=Os03t0583900-02
Chr03	irgsp1_rep	CDS	21507517	21507935	.	-	0	Parent=Os03t0583900-02
Chr03	irgsp1_rep	CDS	21507314	21507417	.	-	1	Parent=Os03t0583900-02
Chr03	irgsp1_rep	CDS	21506140	21506336	.	-	2	Parent=Os03t0583900-02
Chr03	irgsp1_rep	CDS	21505144	21505353	.	-	0	Parent=Os03t0583900-02
Chr03	irgsp1_rep	CDS	21503842	21504255	.	-	0	Parent=Os03t0583900-02
Chr03	irgsp1_rep	CDS	21502236	21502295	.	-	0	Parent=Os03t0583900-02
Chr03	irgsp1_rep	mRNA	21502236	21509064	.	-	.	ID=Os03t0583900-03;Name=Os03t0583900-03;Locus_id=Os03g0583900;CGSNL Gene Symbol=DCL2A;CGSNL Gene Name=DICER-LIKE 2A;Oryzabase Gene Symbol Synonym(s)=OsDCL2a%2C OsDCL2;Oryzabase Gene Name Synonym(s)=Endoribonuclease Dicer homolog 2a%2C Dicer-like protein 2a;Note=Similar to Endoribonuclease Dicer homolog 2a.;Transcript_evidence=AK121076 (DDBJ%2C Best hit);ORF_evidence=Q10HL3 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: endoribonuclease activity%2C producing 5'-phosphomonoesters (GO:0016891);InterPro=Argonaute/Dicer protein%2C PAZ (IPR003100),Dicer double-stranded RNA-binding fold (IPR005034);NIAS_FLcDNA=J023062B19;Oryzabase=8307;Expression=AK121076;TENOR=Os03t0583900-03;KEGG=Os03t0583900-03 (EC:3.1.26.-)
Chr03	irgsp1_rep	five_prime_UTR	21509048	21509064	.	-	.	Parent=Os03t0583900-03
Chr03	irgsp1_rep	CDS	21508813	21509047	.	-	0	Parent=Os03t0583900-03
Chr03	irgsp1_rep	CDS	21508030	21508298	.	-	2	Parent=Os03t0583900-03
Chr03	irgsp1_rep	CDS	21507517	21507935	.	-	0	Parent=Os03t0583900-03
Chr03	irgsp1_rep	CDS	21507288	21507417	.	-	1	Parent=Os03t0583900-03
Chr03	irgsp1_rep	three_prime_UTR	21506140	21507287	.	-	.	Parent=Os03t0583900-03
Chr03	irgsp1_rep	three_prime_UTR	21503842	21505353	.	-	.	Parent=Os03t0583900-03
Chr03	irgsp1_rep	three_prime_UTR	21502236	21502295	.	-	.	Parent=Os03t0583900-03
Chr03	irgsp1_rep	mRNA	21500778	21507797	.	-	.	ID=Os03t0583900-04;Name=Os03t0583900-04;Locus_id=Os03g0583900;CGSNL Gene Symbol=DCL2A;CGSNL Gene Name=DICER-LIKE 2A;Oryzabase Gene Symbol Synonym(s)=OsDCL2a%2C OsDCL2;Oryzabase Gene Name Synonym(s)=Endoribonuclease Dicer homolog 2a%2C Dicer-like protein 2a;Note=Similar to Endoribonuclease Dicer homolog 2a.;Transcript_evidence=AK066794 (DDBJ%2C Best hit);ORF_evidence=Q10HL3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Argonaute/Dicer protein%2C PAZ (IPR003100);NIAS_FLcDNA=J013088A04;Oryzabase=8307;Expression=AK066794;TENOR=Os03t0583900-04;KEGG=Os03t0583900-04 (EC:3.1.26.-)
Chr03	irgsp1_rep	CDS	21507517	21507797	.	-	0	Parent=Os03t0583900-04
Chr03	irgsp1_rep	CDS	21507314	21507417	.	-	1	Parent=Os03t0583900-04
Chr03	irgsp1_rep	CDS	21505244	21505353	.	-	2	Parent=Os03t0583900-04
Chr03	irgsp1_rep	three_prime_UTR	21505144	21505243	.	-	.	Parent=Os03t0583900-04
Chr03	irgsp1_rep	three_prime_UTR	21503842	21504255	.	-	.	Parent=Os03t0583900-04
Chr03	irgsp1_rep	three_prime_UTR	21502017	21502295	.	-	.	Parent=Os03t0583900-04
Chr03	irgsp1_rep	three_prime_UTR	21500778	21501515	.	-	.	Parent=Os03t0583900-04
Chr03	irgsp1_rep	mRNA	21520109	21522077	.	-	.	ID=Os03t0584050-00;Name=Os03t0584050-00;Locus_id=Os03g0584050;Note=Conserved hypothetical protein.;Transcript_evidence=AK105900 (DDBJ%2C Secondary hit);ORF_evidence=B9F9G7 (UniProt);TENOR=Os03t0584050-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	21521540	21522077	.	-	.	Parent=Os03t0584050-00
Chr03	irgsp1_rep	CDS	21520866	21521539	.	-	0	Parent=Os03t0584050-00
Chr03	irgsp1_rep	CDS	21520202	21520292	.	-	1	Parent=Os03t0584050-00
Chr03	irgsp1_rep	three_prime_UTR	21520109	21520201	.	-	.	Parent=Os03t0584050-00
Chr03	irgsp1_rep	mRNA	21501406	21506577	.	+	.	ID=Os03t0584100-01;Name=Os03t0584100-01;Locus_id=Os03g0584100;Note=Non-protein coding transcript.;Transcript_evidence=AK242304 (DDBJ%2C Best hit),AK242302 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J075193D17,J075193B01;TENOR=Os03t0584100-01
Chr03	irgsp1_rep	exon	21501406	21501592	.	+	.	Parent=Os03t0584100-01
Chr03	irgsp1_rep	exon	21506202	21506577	.	+	.	Parent=Os03t0584100-01
Chr03	irgsp1_rep	mRNA	21539060	21539656	.	+	.	ID=Os03t0584224-00;Name=Os03t0584224-00;Locus_id=Os03g0584224;Note=Conserved hypothetical protein.;Transcript_evidence=BT086332 (DDBJ);ORF_evidence=A2Y774 (UniProt);TENOR=Os03t0584224-00
Chr03	irgsp1_rep	five_prime_UTR	21539060	21539233	.	+	.	Parent=Os03t0584224-00
Chr03	irgsp1_rep	CDS	21539234	21539656	.	+	0	Parent=Os03t0584224-00
Chr03	irgsp1_rep	mRNA	21541982	21544545	.	+	.	ID=Os03t0584300-01;Name=Os03t0584300-01;Locus_id=Os03g0584300;Note=Conserved hypothetical protein.;Transcript_evidence=AK105133 (DDBJ%2C Best hit);ORF_evidence=B8B6N6 (UniProt);NIAS_FLcDNA=001-101-H11;TENOR=Os03t0584300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	21541982	21542283	.	+	0	Parent=Os03t0584300-01
Chr03	irgsp1_rep	CDS	21543760	21543847	.	+	1	Parent=Os03t0584300-01
Chr03	irgsp1_rep	CDS	21544294	21544344	.	+	0	Parent=Os03t0584300-01
Chr03	irgsp1_rep	three_prime_UTR	21544345	21544545	.	+	.	Parent=Os03t0584300-01
Chr03	irgsp1_rep	mRNA	21544810	21546217	.	-	.	ID=Os03t0584400-01;Name=Os03t0584400-01;Locus_id=Os03g0584400;Note=ATPase%2C AAA-type%2C core domain containing protein.;Transcript_evidence=AK101987 (DDBJ%2C Best hit);ORF_evidence=NP_001148068.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);NIAS_FLcDNA=J033079B04;Expression=AK101987;TENOR=Os03t0584400-01;KEGG=Os03t0584400-01
Chr03	irgsp1_rep	CDS	21545201	21546217	.	-	0	Parent=Os03t0584400-01
Chr03	irgsp1_rep	three_prime_UTR	21544810	21545200	.	-	.	Parent=Os03t0584400-01
Chr03	irgsp1_rep	mRNA	21547160	21548436	.	+	.	ID=Os03t0584500-00;Name=Os03t0584500-00;Locus_id=Os03g0584500;Note=Hypothetical conserved gene.;Transcript_evidence=CU405644 (DDBJ%2C Best hit);ORF_evidence=Q10HK7 (UniProt);TENOR=Os03t0584500-00;KEGG=Os03t0584500-00
Chr03	irgsp1_rep	five_prime_UTR	21547160	21547630	.	+	.	Parent=Os03t0584500-00
Chr03	irgsp1_rep	CDS	21547631	21547948	.	+	0	Parent=Os03t0584500-00
Chr03	irgsp1_rep	three_prime_UTR	21547949	21548436	.	+	.	Parent=Os03t0584500-00
Chr03	irgsp1_rep	mRNA	21600334	21600700	.	+	.	ID=Os03t0585600-00;Name=Os03t0585600-00;Locus_id=Os03g0585600;CGSNL Gene Symbol=DOF11;CGSNL Gene Name=DNA BINDING WITH ONE FINGER 11;Oryzabase Gene Symbol Synonym(s)=OsDof11%2C Dof11%2C OsDof-11;Oryzabase Gene Name Synonym(s)=Dof zinc factor 11%2C Dof transcription factor 11;Note=Conserved hypothetical protein.;Transcript_evidence=GQ183535 (DDBJ%2C Best hit);ORF_evidence=Q6F2W0 (UniProt);Oryzabase=8802;TENOR=Os03t0585600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	21600334	21600700	.	+	0	Parent=Os03t0585600-00
Chr03	irgsp1_rep	mRNA	21607446	21608537	.	+	.	ID=Os03t0585900-00;Name=Os03t0585900-00;Locus_id=Os03g0585900;Note=Conserved hypothetical protein.;Transcript_evidence=EU961650 (DDBJ);ORF_evidence=NP_001051049.1 (RefSeq);TENOR=Os03t0585900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	21607446	21608537	.	+	0	Parent=Os03t0585900-00
Chr03	irgsp1_rep	mRNA	21619168	21619958	.	+	.	ID=Os03t0586099-00;Name=Os03t0586099-00;Locus_id=Os03g0586099;Note=Peptidase aspartic%2C catalytic domain containing protein.;Transcript_evidence=tplb0012a04 (Wheat FLcDNA);ORF_evidence=Q6AUQ1 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);TENOR=Os03t0586099-00
Chr03	irgsp1_rep	five_prime_UTR	21619168	21619486	.	+	.	Parent=Os03t0586099-00
Chr03	irgsp1_rep	CDS	21619487	21619864	.	+	0	Parent=Os03t0586099-00
Chr03	irgsp1_rep	three_prime_UTR	21619865	21619958	.	+	.	Parent=Os03t0586099-00
Chr03	irgsp1_rep	mRNA	21622958	21628739	.	-	.	ID=Os03t0586300-01;Name=Os03t0586300-01;Locus_id=Os03g0586300;Note=Reticulon family protein.;Transcript_evidence=AK100442 (DDBJ%2C Best hit);ORF_evidence=XP_002269181.1 (RefSeq);GO=Cellular Component: endoplasmic reticulum (GO:0005783);InterPro=Reticulon (IPR003388),Nucleotide-diphospho-sugar transferase (IPR005069);NIAS_FLcDNA=J023089N19;Expression=AK100442;TENOR=Os03t0586300-01;KEGG=Os03t0586300-01
Chr03	irgsp1_rep	five_prime_UTR	21628673	21628739	.	-	.	Parent=Os03t0586300-01
Chr03	irgsp1_rep	CDS	21627949	21628672	.	-	0	Parent=Os03t0586300-01
Chr03	irgsp1_rep	CDS	21627133	21627389	.	-	2	Parent=Os03t0586300-01
Chr03	irgsp1_rep	CDS	21626800	21626889	.	-	0	Parent=Os03t0586300-01
Chr03	irgsp1_rep	three_prime_UTR	21626747	21626799	.	-	.	Parent=Os03t0586300-01
Chr03	irgsp1_rep	three_prime_UTR	21626299	21626393	.	-	.	Parent=Os03t0586300-01
Chr03	irgsp1_rep	three_prime_UTR	21626138	21626191	.	-	.	Parent=Os03t0586300-01
Chr03	irgsp1_rep	three_prime_UTR	21625506	21625596	.	-	.	Parent=Os03t0586300-01
Chr03	irgsp1_rep	three_prime_UTR	21624564	21624662	.	-	.	Parent=Os03t0586300-01
Chr03	irgsp1_rep	three_prime_UTR	21624342	21624461	.	-	.	Parent=Os03t0586300-01
Chr03	irgsp1_rep	three_prime_UTR	21623654	21623740	.	-	.	Parent=Os03t0586300-01
Chr03	irgsp1_rep	three_prime_UTR	21622958	21623577	.	-	.	Parent=Os03t0586300-01
Chr03	irgsp1_rep	mRNA	21631071	21634055	.	-	.	ID=Os03t0586400-01;Name=Os03t0586400-01;Locus_id=Os03g0586400;Note=Conserved hypothetical protein.;Transcript_evidence=AK065713 (DDBJ%2C Best hit);ORF_evidence=A3AJZ2 (UniProt);NIAS_FLcDNA=J013042L04;Expression=AK065713;TENOR=Os03t0586400-01;KEGG=Os03t0586400-01
Chr03	irgsp1_rep	five_prime_UTR	21633661	21634055	.	-	.	Parent=Os03t0586400-01
Chr03	irgsp1_rep	CDS	21633316	21633660	.	-	0	Parent=Os03t0586400-01
Chr03	irgsp1_rep	three_prime_UTR	21633116	21633315	.	-	.	Parent=Os03t0586400-01
Chr03	irgsp1_rep	three_prime_UTR	21632956	21633031	.	-	.	Parent=Os03t0586400-01
Chr03	irgsp1_rep	three_prime_UTR	21631071	21632796	.	-	.	Parent=Os03t0586400-01
Chr03	irgsp1_rep	mRNA	21634990	21637232	.	+	.	ID=Os03t0586500-01;Name=Os03t0586500-01;Locus_id=Os03g0586500;Note=Similar to chloroplast post-illumination chlorophyll fluorescence increase protein.;Transcript_evidence=AK068097 (DDBJ%2C Best hit),AK059901 (DDBJ%2C Best hit);ORF_evidence=NP_001105995.1 (RefSeq);NIAS_FLcDNA=J013132D23,006-208-G07;TENOR=Os03t0586500-01
Chr03	irgsp1_rep	five_prime_UTR	21634990	21635044	.	+	.	Parent=Os03t0586500-01
Chr03	irgsp1_rep	CDS	21635045	21635241	.	+	0	Parent=Os03t0586500-01
Chr03	irgsp1_rep	CDS	21635331	21635415	.	+	1	Parent=Os03t0586500-01
Chr03	irgsp1_rep	CDS	21635787	21635865	.	+	0	Parent=Os03t0586500-01
Chr03	irgsp1_rep	CDS	21635989	21636102	.	+	2	Parent=Os03t0586500-01
Chr03	irgsp1_rep	CDS	21636346	21636458	.	+	2	Parent=Os03t0586500-01
Chr03	irgsp1_rep	CDS	21636667	21636774	.	+	0	Parent=Os03t0586500-01
Chr03	irgsp1_rep	CDS	21636857	21636976	.	+	0	Parent=Os03t0586500-01
Chr03	irgsp1_rep	three_prime_UTR	21636977	21637232	.	+	.	Parent=Os03t0586500-01
Chr03	irgsp1_rep	mRNA	21637320	21641223	.	-	.	ID=Os03t0586600-01;Name=Os03t0586600-01;Locus_id=Os03g0586600;Note=Similar to DNA-DIRECTED RNA POLYMERASES I%2C II%2C AND III 15 KD POLYPEPTIDE(RPABC6).;Transcript_evidence=AK070943 (DDBJ%2C Best hit);ORF_evidence=NP_001148912.1 (RefSeq);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Cellular Component: RNA polymerase complex (GO:0030880),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899);InterPro=RNA polymerase%2C subunit omega/K/RPABC2 (IPR006110),DNA-directed RNA polymerase%2C subunit K/RPABC2 (IPR006111),RNA polymerase subunit%2C RPB6/omega (IPR012293),DNA-directed RNA polymerase%2C 14-18kDa subunit%2C conserved site (IPR020708);NIAS_FLcDNA=J023067P18;Expression=AK070943;TENOR=Os03t0586600-01;KEGG=Os03t0586600-01
Chr03	irgsp1_rep	five_prime_UTR	21641123	21641223	.	-	.	Parent=Os03t0586600-01
Chr03	irgsp1_rep	CDS	21641088	21641122	.	-	0	Parent=Os03t0586600-01
Chr03	irgsp1_rep	CDS	21639749	21639782	.	-	1	Parent=Os03t0586600-01
Chr03	irgsp1_rep	CDS	21639502	21639671	.	-	0	Parent=Os03t0586600-01
Chr03	irgsp1_rep	CDS	21639357	21639408	.	-	1	Parent=Os03t0586600-01
Chr03	irgsp1_rep	CDS	21637929	21637996	.	-	0	Parent=Os03t0586600-01
Chr03	irgsp1_rep	CDS	21637778	21637847	.	-	1	Parent=Os03t0586600-01
Chr03	irgsp1_rep	three_prime_UTR	21637320	21637777	.	-	.	Parent=Os03t0586600-01
Chr03	irgsp1_rep	mRNA	21647446	21659950	.	-	.	ID=Os03t0586700-01;Name=Os03t0586700-01;Locus_id=Os03g0586700;Note=Conserved hypothetical protein.;Transcript_evidence=AK067968 (DDBJ%2C Best hit);ORF_evidence=B8AL82 (UniProt);NIAS_FLcDNA=J013121G22;Expression=AK067968;TENOR=Os03t0586700-01;KEGG=Os03t0586700-01
Chr03	irgsp1_rep	five_prime_UTR	21659768	21659950	.	-	.	Parent=Os03t0586700-01
Chr03	irgsp1_rep	CDS	21659609	21659767	.	-	0	Parent=Os03t0586700-01
Chr03	irgsp1_rep	CDS	21658753	21658884	.	-	0	Parent=Os03t0586700-01
Chr03	irgsp1_rep	CDS	21658198	21658269	.	-	0	Parent=Os03t0586700-01
Chr03	irgsp1_rep	CDS	21657698	21657768	.	-	0	Parent=Os03t0586700-01
Chr03	irgsp1_rep	CDS	21657511	21657610	.	-	1	Parent=Os03t0586700-01
Chr03	irgsp1_rep	CDS	21657336	21657434	.	-	0	Parent=Os03t0586700-01
Chr03	irgsp1_rep	CDS	21656981	21657107	.	-	0	Parent=Os03t0586700-01
Chr03	irgsp1_rep	CDS	21656592	21656725	.	-	2	Parent=Os03t0586700-01
Chr03	irgsp1_rep	CDS	21656452	21656511	.	-	0	Parent=Os03t0586700-01
Chr03	irgsp1_rep	CDS	21656130	21656365	.	-	0	Parent=Os03t0586700-01
Chr03	irgsp1_rep	CDS	21653761	21654190	.	-	1	Parent=Os03t0586700-01
Chr03	irgsp1_rep	CDS	21653005	21653328	.	-	0	Parent=Os03t0586700-01
Chr03	irgsp1_rep	CDS	21652295	21652900	.	-	0	Parent=Os03t0586700-01
Chr03	irgsp1_rep	CDS	21652034	21652207	.	-	0	Parent=Os03t0586700-01
Chr03	irgsp1_rep	CDS	21649834	21650061	.	-	0	Parent=Os03t0586700-01
Chr03	irgsp1_rep	CDS	21649486	21649769	.	-	0	Parent=Os03t0586700-01
Chr03	irgsp1_rep	CDS	21649121	21649399	.	-	1	Parent=Os03t0586700-01
Chr03	irgsp1_rep	CDS	21648845	21648967	.	-	1	Parent=Os03t0586700-01
Chr03	irgsp1_rep	CDS	21647811	21647943	.	-	1	Parent=Os03t0586700-01
Chr03	irgsp1_rep	three_prime_UTR	21647446	21647810	.	-	.	Parent=Os03t0586700-01
Chr03	irgsp1_rep	mRNA	21665280	21673555	.	-	.	ID=Os03t0586800-02;Name=Os03t0586800-02;Locus_id=Os03g0586800;Note=Similar to Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) (LysRS).;Transcript_evidence=AK063765 (DDBJ%2C Best hit),AK099302 (DDBJ%2C Best hit);ORF_evidence=Q10HI8 (UniProt);NIAS_FLcDNA=001-121-B05,J023143D06;Expression=AK063765;TENOR=Os03t0586800-02;KEGG=Os03t0586800-02 (EC:6.1.1.6)
Chr03	irgsp1_rep	five_prime_UTR	21673445	21673555	.	-	.	Parent=Os03t0586800-02
Chr03	irgsp1_rep	CDS	21673356	21673444	.	-	0	Parent=Os03t0586800-02
Chr03	irgsp1_rep	CDS	21673179	21673254	.	-	1	Parent=Os03t0586800-02
Chr03	irgsp1_rep	CDS	21672874	21672948	.	-	0	Parent=Os03t0586800-02
Chr03	irgsp1_rep	CDS	21672613	21672778	.	-	0	Parent=Os03t0586800-02
Chr03	irgsp1_rep	CDS	21672426	21672519	.	-	2	Parent=Os03t0586800-02
Chr03	irgsp1_rep	CDS	21671490	21671575	.	-	1	Parent=Os03t0586800-02
Chr03	irgsp1_rep	CDS	21671087	21671169	.	-	2	Parent=Os03t0586800-02
Chr03	irgsp1_rep	CDS	21669195	21669275	.	-	0	Parent=Os03t0586800-02
Chr03	irgsp1_rep	CDS	21668479	21668604	.	-	0	Parent=Os03t0586800-02
Chr03	irgsp1_rep	CDS	21668112	21668394	.	-	0	Parent=Os03t0586800-02
Chr03	irgsp1_rep	CDS	21667768	21667864	.	-	2	Parent=Os03t0586800-02
Chr03	irgsp1_rep	CDS	21667506	21667662	.	-	1	Parent=Os03t0586800-02
Chr03	irgsp1_rep	CDS	21667025	21667168	.	-	0	Parent=Os03t0586800-02
Chr03	irgsp1_rep	CDS	21666875	21666943	.	-	0	Parent=Os03t0586800-02
Chr03	irgsp1_rep	CDS	21666319	21666462	.	-	0	Parent=Os03t0586800-02
Chr03	irgsp1_rep	CDS	21666182	21666220	.	-	0	Parent=Os03t0586800-02
Chr03	irgsp1_rep	three_prime_UTR	21666150	21666181	.	-	.	Parent=Os03t0586800-02
Chr03	irgsp1_rep	three_prime_UTR	21665280	21665542	.	-	.	Parent=Os03t0586800-02
Chr03	irgsp1_rep	mRNA	21673719	21680339	.	+	.	ID=Os03t0586900-01;Name=Os03t0586900-01;Locus_id=Os03g0586900;RAP-DB Gene Symbol Synonym(s)=OsPLS2;RAP-DB Gene Name Synonym(s)=premature leaf senescence2;CGSNL Gene Symbol=PLS2;CGSNL Gene Name=PREMATURE LEAF SENESCENCE 2;Oryzabase Gene Symbol Synonym(s)=RBP-59%2C OsPLS2;Oryzabase Gene Name Synonym(s)=RNA-binding RBP-59%2C premature leaf senescence 2;Note=Upf1-like helicase%2C Regulation of leaf senescence;Transcript_evidence=AK099721;ORF_evidence=Q6F2U8;GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP binding (GO:0005524);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),Helicase SMUBP-2/Hcs1-like (IPR004483),Helicase superfamily 1/2%2C ATP-binding domain (IPR014001),DNA2/NAM7 helicase%2C AAA domain (IPR041677),AAA+ ATPase domain (IPR003593),DNA2/NAM7 helicase-like%2C AAA domain (IPR041679);NIAS_FLcDNA=J013088F16;Manual Curation=March 2%2C 2020;Literature_PMID=30843130;Oryzabase=22092;Expression=AK099721;TENOR=Os03t0586900-01;KEGG=Os03t0586900-01;Subcellular location=nucleus (GO:0005634), plasma membrane (GO:0005886)
Chr03	irgsp1_rep	five_prime_UTR	21673719	21673751	.	+	.	Parent=Os03t0586900-01
Chr03	irgsp1_rep	CDS	21673752	21673868	.	+	0	Parent=Os03t0586900-01
Chr03	irgsp1_rep	CDS	21673976	21674068	.	+	0	Parent=Os03t0586900-01
Chr03	irgsp1_rep	CDS	21674184	21674252	.	+	0	Parent=Os03t0586900-01
Chr03	irgsp1_rep	CDS	21674650	21674739	.	+	0	Parent=Os03t0586900-01
Chr03	irgsp1_rep	CDS	21674825	21674908	.	+	0	Parent=Os03t0586900-01
Chr03	irgsp1_rep	CDS	21675185	21675349	.	+	0	Parent=Os03t0586900-01
Chr03	irgsp1_rep	CDS	21676092	21676279	.	+	0	Parent=Os03t0586900-01
Chr03	irgsp1_rep	CDS	21676460	21676532	.	+	1	Parent=Os03t0586900-01
Chr03	irgsp1_rep	CDS	21676863	21676916	.	+	0	Parent=Os03t0586900-01
Chr03	irgsp1_rep	CDS	21677116	21677373	.	+	0	Parent=Os03t0586900-01
Chr03	irgsp1_rep	CDS	21677988	21678194	.	+	0	Parent=Os03t0586900-01
Chr03	irgsp1_rep	CDS	21678390	21678493	.	+	0	Parent=Os03t0586900-01
Chr03	irgsp1_rep	CDS	21678906	21679050	.	+	1	Parent=Os03t0586900-01
Chr03	irgsp1_rep	CDS	21679205	21679339	.	+	0	Parent=Os03t0586900-01
Chr03	irgsp1_rep	CDS	21679707	21679880	.	+	0	Parent=Os03t0586900-01
Chr03	irgsp1_rep	three_prime_UTR	21679881	21680339	.	+	.	Parent=Os03t0586900-01
Chr03	irgsp1_rep	mRNA	21681989	21685007	.	+	.	ID=Os03t0587000-01;Name=Os03t0587000-01;Locus_id=Os03g0587000;Oryzabase Gene Symbol Synonym(s)=OsIMP-1%2C IMP-1%2C OsIMP%2C IMP;Oryzabase Gene Name Synonym(s)=inositol monophosphatase 1%2C L-myo-inositol monophosphatase%2C IMPase;Note=Similar to L-galactose-1-phosphate phosphatase.;Transcript_evidence=AK071149 (DDBJ%2C Best hit);ORF_evidence=B3DFH0 (UniProt);GO=Molecular Function: inositol or phosphatidylinositol phosphatase activity (GO:0004437);InterPro=Inositol monophosphatase (IPR000760),Inositol monophosphatase%2C conserved site (IPR020550),Inositol monophosphatase%2C Lithium-sensitive (IPR020552),Inositol monophosphatase%2C metal-binding site (IPR020583);NIAS_FLcDNA=J023078H18;Oryzabase=11889;Expression=AK071149;TENOR=Os03t0587000-01;KEGG=Os03t0587000-01 (EC:3.1.3.25)
Chr03	irgsp1_rep	five_prime_UTR	21681989	21682058	.	+	.	Parent=Os03t0587000-01
Chr03	irgsp1_rep	CDS	21682059	21682115	.	+	0	Parent=Os03t0587000-01
Chr03	irgsp1_rep	CDS	21682230	21682280	.	+	0	Parent=Os03t0587000-01
Chr03	irgsp1_rep	CDS	21682410	21682597	.	+	0	Parent=Os03t0587000-01
Chr03	irgsp1_rep	CDS	21682684	21682768	.	+	1	Parent=Os03t0587000-01
Chr03	irgsp1_rep	CDS	21682945	21682999	.	+	0	Parent=Os03t0587000-01
Chr03	irgsp1_rep	CDS	21683095	21683138	.	+	2	Parent=Os03t0587000-01
Chr03	irgsp1_rep	CDS	21684142	21684210	.	+	0	Parent=Os03t0587000-01
Chr03	irgsp1_rep	CDS	21684304	21684404	.	+	0	Parent=Os03t0587000-01
Chr03	irgsp1_rep	CDS	21684493	21684549	.	+	1	Parent=Os03t0587000-01
Chr03	irgsp1_rep	CDS	21684637	21684733	.	+	1	Parent=Os03t0587000-01
Chr03	irgsp1_rep	three_prime_UTR	21684734	21685007	.	+	.	Parent=Os03t0587000-01
Chr03	irgsp1_rep	mRNA	21685293	21687245	.	+	.	ID=Os03t0587100-01;Name=Os03t0587100-01;Locus_id=Os03g0587100;Note=Similar to decarboxylase family protein.;Transcript_evidence=AK064020 (DDBJ%2C Best hit);ORF_evidence=NP_001150828.1 (RefSeq);InterPro=Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG (IPR005269);NIAS_FLcDNA=001-125-A02;TENOR=Os03t0587100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	21685293	21685913	.	+	.	Parent=Os03t0587100-01
Chr03	irgsp1_rep	CDS	21685914	21686058	.	+	0	Parent=Os03t0587100-01
Chr03	irgsp1_rep	CDS	21686318	21686504	.	+	2	Parent=Os03t0587100-01
Chr03	irgsp1_rep	CDS	21686604	21686994	.	+	1	Parent=Os03t0587100-01
Chr03	irgsp1_rep	three_prime_UTR	21686995	21687245	.	+	.	Parent=Os03t0587100-01
Chr03	irgsp1_rep	mRNA	21685337	21690776	.	+	.	ID=Os03t0587100-02;Name=Os03t0587100-02;Locus_id=Os03g0587100;Note=Similar to decarboxylase family protein.;Transcript_evidence=AK100380 (DDBJ%2C Best hit);ORF_evidence=NP_001150828.1 (RefSeq);InterPro=Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG (IPR005269);NIAS_FLcDNA=J023085E16;TENOR=Os03t0587100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	21685337	21685913	.	+	.	Parent=Os03t0587100-02
Chr03	irgsp1_rep	CDS	21685914	21686058	.	+	0	Parent=Os03t0587100-02
Chr03	irgsp1_rep	CDS	21686318	21686504	.	+	2	Parent=Os03t0587100-02
Chr03	irgsp1_rep	CDS	21686604	21686994	.	+	1	Parent=Os03t0587100-02
Chr03	irgsp1_rep	three_prime_UTR	21686995	21687014	.	+	.	Parent=Os03t0587100-02
Chr03	irgsp1_rep	three_prime_UTR	21689056	21689367	.	+	.	Parent=Os03t0587100-02
Chr03	irgsp1_rep	three_prime_UTR	21689439	21690320	.	+	.	Parent=Os03t0587100-02
Chr03	irgsp1_rep	three_prime_UTR	21690583	21690776	.	+	.	Parent=Os03t0587100-02
Chr03	irgsp1_rep	mRNA	21685496	21689976	.	+	.	ID=Os03t0587100-03;Name=Os03t0587100-03;Locus_id=Os03g0587100;Note=Similar to decarboxylase family protein.;Transcript_evidence=AK110975 (DDBJ%2C Best hit);ORF_evidence=NP_001150828.1 (RefSeq);InterPro=Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG (IPR005269);NIAS_FLcDNA=002-174-C03;TENOR=Os03t0587100-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	21685496	21685913	.	+	.	Parent=Os03t0587100-03
Chr03	irgsp1_rep	CDS	21685914	21686058	.	+	0	Parent=Os03t0587100-03
Chr03	irgsp1_rep	CDS	21686318	21686504	.	+	2	Parent=Os03t0587100-03
Chr03	irgsp1_rep	CDS	21686604	21686994	.	+	1	Parent=Os03t0587100-03
Chr03	irgsp1_rep	three_prime_UTR	21686995	21687014	.	+	.	Parent=Os03t0587100-03
Chr03	irgsp1_rep	three_prime_UTR	21689056	21689367	.	+	.	Parent=Os03t0587100-03
Chr03	irgsp1_rep	three_prime_UTR	21689439	21689976	.	+	.	Parent=Os03t0587100-03
Chr03	irgsp1_rep	mRNA	21685498	21687238	.	+	.	ID=Os03t0587100-04;Name=Os03t0587100-04;Locus_id=Os03g0587100;Note=Expressed protein.;Transcript_evidence=AK102947 (DDBJ%2C Best hit);ORF_evidence=NP_001150828.1 (RefSeq);InterPro=Cytokinin riboside 5&apos%3B-monophosphate phosphoribohydrolase LOG (IPR005269);NIAS_FLcDNA=J033115B13;Expression=AK102947;TENOR=Os03t0587100-04;KEGG=Os03t0587100-04
Chr03	irgsp1_rep	five_prime_UTR	21685498	21685569	.	+	.	Parent=Os03t0587100-04
Chr03	irgsp1_rep	CDS	21685570	21685872	.	+	0	Parent=Os03t0587100-04
Chr03	irgsp1_rep	CDS	21685932	21686058	.	+	0	Parent=Os03t0587100-04
Chr03	irgsp1_rep	CDS	21686318	21686504	.	+	2	Parent=Os03t0587100-04
Chr03	irgsp1_rep	CDS	21686604	21686994	.	+	1	Parent=Os03t0587100-04
Chr03	irgsp1_rep	three_prime_UTR	21686995	21687238	.	+	.	Parent=Os03t0587100-04
Chr03	irgsp1_rep	mRNA	21687370	21693162	.	-	.	ID=Os03t0587200-01;Name=Os03t0587200-01;Locus_id=Os03g0587200;Note=Kinesin%2C motor region domain containing protein.;Transcript_evidence=AK121995 (DDBJ%2C Best hit);ORF_evidence=Q93XF4 (UniProt);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752),Kinesin-related conserved domain (IPR010544);NIAS_FLcDNA=J033110A05;Expression=AK121995;TENOR=Os03t0587200-01;KEGG=Os03t0587200-01
Chr03	irgsp1_rep	five_prime_UTR	21693061	21693162	.	-	.	Parent=Os03t0587200-01
Chr03	irgsp1_rep	CDS	21692764	21693060	.	-	0	Parent=Os03t0587200-01
Chr03	irgsp1_rep	CDS	21692541	21692684	.	-	0	Parent=Os03t0587200-01
Chr03	irgsp1_rep	CDS	21692380	21692463	.	-	0	Parent=Os03t0587200-01
Chr03	irgsp1_rep	CDS	21692143	21692268	.	-	0	Parent=Os03t0587200-01
Chr03	irgsp1_rep	CDS	21691994	21692053	.	-	0	Parent=Os03t0587200-01
Chr03	irgsp1_rep	CDS	21691799	21691852	.	-	0	Parent=Os03t0587200-01
Chr03	irgsp1_rep	CDS	21691618	21691710	.	-	0	Parent=Os03t0587200-01
Chr03	irgsp1_rep	CDS	21690898	21690993	.	-	0	Parent=Os03t0587200-01
Chr03	irgsp1_rep	CDS	21690535	21690680	.	-	0	Parent=Os03t0587200-01
Chr03	irgsp1_rep	CDS	21690161	21690307	.	-	1	Parent=Os03t0587200-01
Chr03	irgsp1_rep	CDS	21689944	21690073	.	-	1	Parent=Os03t0587200-01
Chr03	irgsp1_rep	CDS	21688959	21689873	.	-	0	Parent=Os03t0587200-01
Chr03	irgsp1_rep	CDS	21688788	21688886	.	-	0	Parent=Os03t0587200-01
Chr03	irgsp1_rep	CDS	21687959	21688708	.	-	0	Parent=Os03t0587200-01
Chr03	irgsp1_rep	CDS	21687601	21687849	.	-	0	Parent=Os03t0587200-01
Chr03	irgsp1_rep	three_prime_UTR	21687370	21687600	.	-	.	Parent=Os03t0587200-01
Chr03	irgsp1_rep	mRNA	21697438	21697539	.	-	.	ID=Os03t0587225-00;Name=Os03t0587225-00;Locus_id=Os03g0587225;Note=Non-protein coding transcript.;Transcript_evidence=AJ303115 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0587225-00
Chr03	irgsp1_rep	exon	21697438	21697539	.	-	.	Parent=Os03t0587225-00
Chr03	irgsp1_rep	mRNA	21697700	21698880	.	-	.	ID=Os03t0587250-01;Name=Os03t0587250-01;Locus_id=Os03g0587250;Note=Conserved hypothetical protein.;Transcript_evidence=AK240802 (DDBJ%2C Best hit);ORF_evidence=NP_001173512.1 (RefSeq);NIAS_FLcDNA=J065002M05;TENOR=Os03t0587250-01;KEGG=Os03t0587250-01
Chr03	irgsp1_rep	five_prime_UTR	21698880	21698880	.	-	.	Parent=Os03t0587250-01
Chr03	irgsp1_rep	CDS	21698442	21698879	.	-	0	Parent=Os03t0587250-01
Chr03	irgsp1_rep	three_prime_UTR	21697700	21698441	.	-	.	Parent=Os03t0587250-01
Chr03	irgsp1_rep	mRNA	21701041	21703525	.	+	.	ID=Os03t0587600-01;Name=Os03t0587600-01;Locus_id=Os03g0587600;Note=Zinc finger%2C CCHC-type domain containing protein.;Transcript_evidence=AK287639 (DDBJ%2C Best hit);ORF_evidence=Q2A9T5 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878);NIAS_FLcDNA=J065078H11;TENOR=Os03t0587600-01;KEGG=Os03t0587600-01
Chr03	irgsp1_rep	five_prime_UTR	21701041	21701054	.	+	.	Parent=Os03t0587600-01
Chr03	irgsp1_rep	CDS	21701055	21703313	.	+	0	Parent=Os03t0587600-01
Chr03	irgsp1_rep	three_prime_UTR	21703314	21703525	.	+	.	Parent=Os03t0587600-01
Chr03	irgsp1_rep	mRNA	21728279	21731479	.	-	.	ID=Os03t0588100-01;Name=Os03t0588100-01;Locus_id=Os03g0588100;Note=Hypothetical conserved gene.;Transcript_evidence=AK287870 (DDBJ%2C Best hit);ORF_evidence=B9F9H9 (UniProt);NIAS_FLcDNA=J065203N16;TENOR=Os03t0588100-01;KEGG=Os03t0588100-01
Chr03	irgsp1_rep	five_prime_UTR	21731478	21731479	.	-	.	Parent=Os03t0588100-01
Chr03	irgsp1_rep	CDS	21731187	21731477	.	-	0	Parent=Os03t0588100-01
Chr03	irgsp1_rep	three_prime_UTR	21730535	21731186	.	-	.	Parent=Os03t0588100-01
Chr03	irgsp1_rep	three_prime_UTR	21728279	21728898	.	-	.	Parent=Os03t0588100-01
Chr03	irgsp1_rep	mRNA	21733006	21737915	.	+	.	ID=Os03t0588200-01;Name=Os03t0588200-01;Locus_id=Os03g0588200;Note=Frigida-like family protein.;Transcript_evidence=AK120221 (DDBJ%2C Best hit);ORF_evidence=A2XJ07 (UniProt);InterPro=Frigida-like (IPR012474);NIAS_FLcDNA=J013041G13;Expression=AK120221;TENOR=Os03t0588200-01;KEGG=Os03t0588200-01
Chr03	irgsp1_rep	five_prime_UTR	21733006	21733089	.	+	.	Parent=Os03t0588200-01
Chr03	irgsp1_rep	CDS	21733090	21734482	.	+	0	Parent=Os03t0588200-01
Chr03	irgsp1_rep	CDS	21736472	21736644	.	+	2	Parent=Os03t0588200-01
Chr03	irgsp1_rep	CDS	21736946	21737776	.	+	0	Parent=Os03t0588200-01
Chr03	irgsp1_rep	three_prime_UTR	21737777	21737915	.	+	.	Parent=Os03t0588200-01
Chr03	irgsp1_rep	mRNA	21745957	21747104	.	+	.	ID=Os03t0588400-00;Name=Os03t0588400-00;Locus_id=Os03g0588400;Note=Similar to HT1 protein kinase.;Transcript_evidence=EU957026 (DDBJ);ORF_evidence=NP_001147925.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os03t0588400-00;KEGG=Os03t0588400-00 (EC:2.7.11.25)
Chr03	irgsp1_rep	five_prime_UTR	21745957	21746045	.	+	.	Parent=Os03t0588400-00
Chr03	irgsp1_rep	CDS	21746046	21747104	.	+	0	Parent=Os03t0588400-00
Chr03	irgsp1_rep	mRNA	21748596	21751686	.	+	.	ID=Os03t0588600-01;Name=Os03t0588600-01;Locus_id=Os03g0588600;Note=Frigida-like family protein.;Transcript_evidence=AK109508 (DDBJ%2C Best hit);ORF_evidence=A3AK08 (UniProt);InterPro=Frigida-like (IPR012474);NIAS_FLcDNA=002-102-G10;Expression=AK109508;TENOR=Os03t0588600-01;KEGG=Os03t0588600-01
Chr03	irgsp1_rep	five_prime_UTR	21748596	21748683	.	+	.	Parent=Os03t0588600-01
Chr03	irgsp1_rep	CDS	21748684	21749974	.	+	0	Parent=Os03t0588600-01
Chr03	irgsp1_rep	CDS	21750374	21750546	.	+	2	Parent=Os03t0588600-01
Chr03	irgsp1_rep	CDS	21751024	21751572	.	+	0	Parent=Os03t0588600-01
Chr03	irgsp1_rep	three_prime_UTR	21751573	21751686	.	+	.	Parent=Os03t0588600-01
Chr03	irgsp1_rep	mRNA	21756823	21763715	.	+	.	ID=Os03t0588800-01;Name=Os03t0588800-01;Locus_id=Os03g0588800;Note=Hypothetical conserved gene.;Transcript_evidence=AK287592 (DDBJ%2C Best hit);ORF_evidence=NP_001173514.1 (RefSeq);InterPro=Frigida-like (IPR012474);NIAS_FLcDNA=J065046J15;TENOR=Os03t0588800-01;KEGG=Os03t0588800-01
Chr03	irgsp1_rep	five_prime_UTR	21756823	21756858	.	+	.	Parent=Os03t0588800-01
Chr03	irgsp1_rep	CDS	21756859	21758755	.	+	0	Parent=Os03t0588800-01
Chr03	irgsp1_rep	CDS	21762578	21762753	.	+	2	Parent=Os03t0588800-01
Chr03	irgsp1_rep	CDS	21763327	21763656	.	+	0	Parent=Os03t0588800-01
Chr03	irgsp1_rep	three_prime_UTR	21763657	21763715	.	+	.	Parent=Os03t0588800-01
Chr03	irgsp1_rep	mRNA	21782331	21783161	.	-	.	ID=Os03t0589100-00;Name=Os03t0589100-00;Locus_id=Os03g0589100;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001173515.1 (RefSeq);TENOR=Os03t0589100-00;KEGG=Os03t0589100-00
Chr03	irgsp1_rep	CDS	21782331	21783161	.	-	0	Parent=Os03t0589100-00
Chr03	irgsp1_rep	mRNA	21784848	21791170	.	-	.	ID=Os03t0589300-01;Name=Os03t0589300-01;Locus_id=Os03g0589300;Note=Ovarian tumour%2C otubain domain containing protein.;Transcript_evidence=AK072986 (DDBJ%2C Best hit);ORF_evidence=NP_001148776.1 (RefSeq);InterPro=Ovarian tumour%2C otubain (IPR003323);NIAS_FLcDNA=J033000K10;Expression=AK072986;TENOR=Os03t0589300-01;KEGG=Os03t0589300-01
Chr03	irgsp1_rep	five_prime_UTR	21790198	21791170	.	-	.	Parent=Os03t0589300-01
Chr03	irgsp1_rep	five_prime_UTR	21789978	21790118	.	-	.	Parent=Os03t0589300-01
Chr03	irgsp1_rep	five_prime_UTR	21789543	21789786	.	-	.	Parent=Os03t0589300-01
Chr03	irgsp1_rep	CDS	21789433	21789542	.	-	0	Parent=Os03t0589300-01
Chr03	irgsp1_rep	CDS	21789098	21789256	.	-	1	Parent=Os03t0589300-01
Chr03	irgsp1_rep	CDS	21788851	21788945	.	-	1	Parent=Os03t0589300-01
Chr03	irgsp1_rep	CDS	21788236	21788353	.	-	2	Parent=Os03t0589300-01
Chr03	irgsp1_rep	CDS	21788012	21788109	.	-	1	Parent=Os03t0589300-01
Chr03	irgsp1_rep	CDS	21787008	21787265	.	-	2	Parent=Os03t0589300-01
Chr03	irgsp1_rep	CDS	21786799	21786911	.	-	2	Parent=Os03t0589300-01
Chr03	irgsp1_rep	CDS	21786445	21786518	.	-	0	Parent=Os03t0589300-01
Chr03	irgsp1_rep	CDS	21786217	21786271	.	-	1	Parent=Os03t0589300-01
Chr03	irgsp1_rep	CDS	21786055	21786129	.	-	0	Parent=Os03t0589300-01
Chr03	irgsp1_rep	CDS	21785898	21785971	.	-	0	Parent=Os03t0589300-01
Chr03	irgsp1_rep	CDS	21785762	21785810	.	-	1	Parent=Os03t0589300-01
Chr03	irgsp1_rep	CDS	21785371	21785455	.	-	0	Parent=Os03t0589300-01
Chr03	irgsp1_rep	CDS	21785165	21785221	.	-	2	Parent=Os03t0589300-01
Chr03	irgsp1_rep	CDS	21785061	21785068	.	-	2	Parent=Os03t0589300-01
Chr03	irgsp1_rep	three_prime_UTR	21784848	21785060	.	-	.	Parent=Os03t0589300-01
Chr03	irgsp1_rep	mRNA	21792860	21793702	.	+	.	ID=Os03t0589400-00;Name=Os03t0589400-00;Locus_id=Os03g0589400;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10HG3 (UniProt);TENOR=Os03t0589400-00;KEGG=Os03t0589400-00
Chr03	irgsp1_rep	CDS	21792860	21793702	.	+	0	Parent=Os03t0589400-00
Chr03	irgsp1_rep	mRNA	21816818	21818159	.	-	.	ID=Os03t0589500-01;Name=Os03t0589500-01;Locus_id=Os03g0589500;Note=Conserved hypothetical protein.;Transcript_evidence=AK105481 (DDBJ%2C Best hit);ORF_evidence=Q5W6J4 (UniProt);NIAS_FLcDNA=001-127-B02;Expression=AK105481;TENOR=Os03t0589500-01;KEGG=Os03t0589500-01
Chr03	irgsp1_rep	five_prime_UTR	21818158	21818159	.	-	.	Parent=Os03t0589500-01
Chr03	irgsp1_rep	CDS	21817933	21818157	.	-	0	Parent=Os03t0589500-01
Chr03	irgsp1_rep	three_prime_UTR	21817680	21817932	.	-	.	Parent=Os03t0589500-01
Chr03	irgsp1_rep	three_prime_UTR	21816818	21817643	.	-	.	Parent=Os03t0589500-01
Chr03	irgsp1_rep	mRNA	21881938	21885330	.	+	.	ID=Os03t0590700-01;Name=Os03t0590700-01;Locus_id=Os03g0590700;Note=NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 domain containing protein.;Transcript_evidence=AK242291 (DDBJ%2C Best hit);ORF_evidence=Q8S7N7 (UniProt);InterPro=NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 (IPR007523);NIAS_FLcDNA=J075191E10;TENOR=Os03t0590700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	21881938	21882096	.	+	.	Parent=Os03t0590700-01
Chr03	irgsp1_rep	five_prime_UTR	21882197	21882268	.	+	.	Parent=Os03t0590700-01
Chr03	irgsp1_rep	five_prime_UTR	21882568	21882671	.	+	.	Parent=Os03t0590700-01
Chr03	irgsp1_rep	five_prime_UTR	21884118	21884670	.	+	.	Parent=Os03t0590700-01
Chr03	irgsp1_rep	CDS	21884671	21884799	.	+	0	Parent=Os03t0590700-01
Chr03	irgsp1_rep	CDS	21884932	21885018	.	+	0	Parent=Os03t0590700-01
Chr03	irgsp1_rep	three_prime_UTR	21885019	21885330	.	+	.	Parent=Os03t0590700-01
Chr03	irgsp1_rep	mRNA	21900408	21902012	.	+	.	ID=Os03t0591000-01;Name=Os03t0591000-01;Locus_id=Os03g0591000;Note=Non-protein coding transcript.;Transcript_evidence=AK068439 (DDBJ%2C Best hit),AK068436 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013154I24,J013153F15;TENOR=Os03t0591000-01
Chr03	irgsp1_rep	exon	21900408	21902012	.	+	.	Parent=Os03t0591000-01
Chr03	irgsp1_rep	mRNA	21900447	21904063	.	+	.	ID=Os03t0591000-03;Name=Os03t0591000-03;Locus_id=Os03g0591000;Note=Hypothetical protein.;Transcript_evidence=AK068808 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013158M24;Expression=AK068808;TENOR=Os03t0591000-03;KEGG=Os03t0591000-03
Chr03	irgsp1_rep	five_prime_UTR	21900447	21902061	.	+	.	Parent=Os03t0591000-03
Chr03	irgsp1_rep	CDS	21902062	21902289	.	+	0	Parent=Os03t0591000-03
Chr03	irgsp1_rep	three_prime_UTR	21902290	21902799	.	+	.	Parent=Os03t0591000-03
Chr03	irgsp1_rep	three_prime_UTR	21903681	21903789	.	+	.	Parent=Os03t0591000-03
Chr03	irgsp1_rep	three_prime_UTR	21903882	21904063	.	+	.	Parent=Os03t0591000-03
Chr03	irgsp1_rep	mRNA	21910439	21913786	.	+	.	ID=Os03t0591300-01;Name=Os03t0591300-01;Locus_id=Os03g0591300;Oryzabase Gene Symbol Synonym(s)=OsbHLH140;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 140;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=AK101749 (DDBJ%2C Best hit);ORF_evidence=A2XJ24 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J033061P20;Oryzabase=15417;TENOR=Os03t0591300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	21910439	21910562	.	+	.	Parent=Os03t0591300-01
Chr03	irgsp1_rep	five_prime_UTR	21910674	21910915	.	+	.	Parent=Os03t0591300-01
Chr03	irgsp1_rep	five_prime_UTR	21912339	21912597	.	+	.	Parent=Os03t0591300-01
Chr03	irgsp1_rep	CDS	21912598	21913389	.	+	0	Parent=Os03t0591300-01
Chr03	irgsp1_rep	three_prime_UTR	21913390	21913786	.	+	.	Parent=Os03t0591300-01
Chr03	irgsp1_rep	mRNA	21950474	21952518	.	-	.	ID=Os03t0591600-00;Name=Os03t0591600-00;Locus_id=Os03g0591600;Note=Protein of unknown function DUF247%2C plant domain containing protein.;Transcript_evidence=AK360031 (DDBJ);ORF_evidence=Q75H12 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);TENOR=Os03t0591600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	21952058	21952518	.	-	0	Parent=Os03t0591600-00
Chr03	irgsp1_rep	CDS	21950474	21951731	.	-	1	Parent=Os03t0591600-00
Chr03	irgsp1_rep	mRNA	21954147	21957702	.	+	.	ID=Os03t0591700-01;Name=Os03t0591700-01;Locus_id=Os03g0591700;Note=Conserved hypothetical protein.;Transcript_evidence=AK240788 (DDBJ%2C Best hit);ORF_evidence=NP_001066732.1 (RefSeq);NIAS_FLcDNA=J053098I09;TENOR=Os03t0591700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	21954147	21954454	.	+	.	Parent=Os03t0591700-01
Chr03	irgsp1_rep	CDS	21954455	21954619	.	+	0	Parent=Os03t0591700-01
Chr03	irgsp1_rep	three_prime_UTR	21954620	21957702	.	+	.	Parent=Os03t0591700-01
Chr03	irgsp1_rep	mRNA	21960011	21963975	.	+	.	ID=Os03t0591801-00;Name=Os03t0591801-00;Locus_id=Os03g0591801;Note=Hypothetical protein.;Transcript_evidence=tplb0024g24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0591801-00
Chr03	irgsp1_rep	five_prime_UTR	21960011	21960365	.	+	.	Parent=Os03t0591801-00
Chr03	irgsp1_rep	CDS	21960366	21960550	.	+	0	Parent=Os03t0591801-00
Chr03	irgsp1_rep	CDS	21963352	21963901	.	+	1	Parent=Os03t0591801-00
Chr03	irgsp1_rep	three_prime_UTR	21963902	21963975	.	+	.	Parent=Os03t0591801-00
Chr03	irgsp1_rep	mRNA	21947123	21949782	.	+	.	ID=Os03t0592100-00;Name=Os03t0592100-00;Locus_id=Os03g0592100;Note=Hypothetical conserved gene.;Transcript_evidence=AK242327 (DDBJ%2C Secondary hit);ORF_evidence=B8A9Q2 (UniProt);TENOR=Os03t0592100-00;KEGG=Os03t0592100-00
Chr03	irgsp1_rep	five_prime_UTR	21947123	21947440	.	+	.	Parent=Os03t0592100-00
Chr03	irgsp1_rep	CDS	21947441	21947641	.	+	0	Parent=Os03t0592100-00
Chr03	irgsp1_rep	three_prime_UTR	21947642	21949632	.	+	.	Parent=Os03t0592100-00
Chr03	irgsp1_rep	three_prime_UTR	21949695	21949782	.	+	.	Parent=Os03t0592100-00
Chr03	irgsp1_rep	mRNA	22000043	22001236	.	+	.	ID=Os03t0592500-01;Name=Os03t0592500-01;Locus_id=Os03g0592500;Oryzabase Gene Symbol Synonym(s)=LHCB%2C LHCP II%2C Lhcb2%2C OsLhcb2%2C Lhcb2.1%2C OsLhcb2.1;Oryzabase Gene Name Synonym(s)=light-harvesting chlorophyll a/b-binding protein b2.1;Note=Similar to Photosystem II type II chlorophyll a/b binding protein (Fragment).;Transcript_evidence=AK066762 (DDBJ%2C Best hit);ORF_evidence=Q10HD0 (UniProt);GO=Biological Process: photosynthesis%2C light harvesting (GO:0009765),Cellular Component: membrane (GO:0016020);InterPro=Chlorophyll A-B binding protein%2C plant (IPR001344),Chlorophyll A-B binding protein (IPR022796),Chlorophyll a/b binding protein domain (IPR023329);NIAS_FLcDNA=J013075I09;Oryzabase=14312;Expression=AK066762;TENOR=Os03t0592500-01;KEGG=Os03t0592500-01
Chr03	irgsp1_rep	five_prime_UTR	22000043	22000092	.	+	.	Parent=Os03t0592500-01
Chr03	irgsp1_rep	CDS	22000093	22000232	.	+	0	Parent=Os03t0592500-01
Chr03	irgsp1_rep	CDS	22000322	22000973	.	+	1	Parent=Os03t0592500-01
Chr03	irgsp1_rep	three_prime_UTR	22000974	22001236	.	+	.	Parent=Os03t0592500-01
Chr03	irgsp1_rep	mRNA	22000565	22001240	.	+	.	ID=Os03t0592500-02;Name=Os03t0592500-02;Locus_id=Os03g0592500;Oryzabase Gene Symbol Synonym(s)=LHCB%2C LHCP II%2C Lhcb2%2C OsLhcb2%2C Lhcb2.1%2C OsLhcb2.1;Oryzabase Gene Name Synonym(s)=light-harvesting chlorophyll a/b-binding protein b2.1;Note=Similar to Chloroplast chlorophyll a-b binding protein (Fragment).;Transcript_evidence=AK058315 (DDBJ%2C Best hit);ORF_evidence=A6N154 (UniProt);GO=Biological Process: photosynthesis%2C light harvesting (GO:0009765),Cellular Component: membrane (GO:0016020);InterPro=Chlorophyll A-B binding protein%2C plant (IPR001344),Chlorophyll A-B binding protein (IPR022796),Chlorophyll a/b binding protein domain (IPR023329);NIAS_FLcDNA=001-014-A06;Oryzabase=14312;Expression=AK058315;TENOR=Os03t0592500-02;KEGG=Os03t0592500-02
Chr03	irgsp1_rep	five_prime_UTR	22000565	22000565	.	+	.	Parent=Os03t0592500-02
Chr03	irgsp1_rep	CDS	22000566	22000973	.	+	0	Parent=Os03t0592500-02
Chr03	irgsp1_rep	three_prime_UTR	22000974	22001240	.	+	.	Parent=Os03t0592500-02
Chr03	irgsp1_rep	mRNA	22006497	22006655	.	+	.	ID=Os03t0592633-00;Name=Os03t0592633-00;Locus_id=Os03g0592633;Note=Non-protein coding transcript.;Transcript_evidence=BT083761 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0592633-00
Chr03	irgsp1_rep	exon	22006497	22006655	.	+	.	Parent=Os03t0592633-00
Chr03	irgsp1_rep	mRNA	22007964	22008130	.	+	.	ID=Os03t0592766-00;Name=Os03t0592766-00;Locus_id=Os03g0592766;Note=Non-protein coding transcript.;Transcript_evidence=BT083761 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0592766-00
Chr03	irgsp1_rep	exon	22007964	22008130	.	+	.	Parent=Os03t0592766-00
Chr03	irgsp1_rep	mRNA	22009145	22009446	.	-	.	ID=Os03t0592950-00;Name=Os03t0592950-00;Locus_id=Os03g0592950;Note=Conserved hypothetical protein.;Transcript_evidence=BT083761 (DDBJ);ORF_evidence=Q8H8K6 (UniProt);TENOR=Os03t0592950-00
Chr03	irgsp1_rep	CDS	22009153	22009446	.	-	0	Parent=Os03t0592950-00
Chr03	irgsp1_rep	three_prime_UTR	22009145	22009152	.	-	.	Parent=Os03t0592950-00
Chr03	irgsp1_rep	mRNA	22014549	22015069	.	+	.	ID=Os03t0593050-00;Name=Os03t0593050-00;Locus_id=Os03g0593050;Note=Non-protein coding transcript.;Transcript_evidence=CT835117 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os03t0593050-00
Chr03	irgsp1_rep	exon	22014549	22015069	.	+	.	Parent=Os03t0593050-00
Chr03	irgsp1_rep	mRNA	22017075	22018018	.	+	.	ID=Os03t0593100-01;Name=Os03t0593100-01;Locus_id=Os03g0593100;Note=Conserved hypothetical protein.;Transcript_evidence=AK287562 (DDBJ%2C Best hit);ORF_evidence=NP_001050587.1 (RefSeq);NIAS_FLcDNA=J065026E01;TENOR=Os03t0593100-01;KEGG=Os03t0593100-01
Chr03	irgsp1_rep	five_prime_UTR	22017075	22017221	.	+	.	Parent=Os03t0593100-01
Chr03	irgsp1_rep	CDS	22017222	22017632	.	+	0	Parent=Os03t0593100-01
Chr03	irgsp1_rep	three_prime_UTR	22017633	22018018	.	+	.	Parent=Os03t0593100-01
Chr03	irgsp1_rep	mRNA	22017024	22029484	.	-	.	ID=Os03t0593200-01;Name=Os03t0593200-01;Locus_id=Os03g0593200;Oryzabase Gene Symbol Synonym(s)=OsCBSDUFCH1%2C OsCBSDUFCH1a%2C OsCBSDUFCH1b;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSDUFCH1%2C CBS domain containing protein OsCBSDUFCH1;Note=Similar to CBS domain containing protein%2C expressed.;Transcript_evidence=AK288509 (DDBJ%2C Best hit);ORF_evidence=Q10HC5 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Cystathionine beta-synthase%2C core (IPR000644),Domain of unknown function DUF21 (IPR002550),Transporter-associated domain (IPR005170),CO dehydrogenase flavoprotein-like%2C FAD-binding%2C subdomain 2 (IPR016169);NIAS_FLcDNA=J090042E17;Oryzabase=10340;TENOR=Os03t0593200-01;KEGG=Os03t0593200-01
Chr03	irgsp1_rep	five_prime_UTR	22029483	22029484	.	-	.	Parent=Os03t0593200-01
Chr03	irgsp1_rep	CDS	22029027	22029482	.	-	0	Parent=Os03t0593200-01
Chr03	irgsp1_rep	CDS	22027826	22027923	.	-	0	Parent=Os03t0593200-01
Chr03	irgsp1_rep	CDS	22027479	22027572	.	-	1	Parent=Os03t0593200-01
Chr03	irgsp1_rep	CDS	22027303	22027385	.	-	0	Parent=Os03t0593200-01
Chr03	irgsp1_rep	CDS	22027105	22027203	.	-	1	Parent=Os03t0593200-01
Chr03	irgsp1_rep	CDS	22026353	22026434	.	-	1	Parent=Os03t0593200-01
Chr03	irgsp1_rep	CDS	22025348	22025487	.	-	0	Parent=Os03t0593200-01
Chr03	irgsp1_rep	CDS	22025198	22025276	.	-	1	Parent=Os03t0593200-01
Chr03	irgsp1_rep	CDS	22025024	22025087	.	-	0	Parent=Os03t0593200-01
Chr03	irgsp1_rep	CDS	22024692	22024783	.	-	2	Parent=Os03t0593200-01
Chr03	irgsp1_rep	CDS	22023447	22023512	.	-	0	Parent=Os03t0593200-01
Chr03	irgsp1_rep	CDS	22022437	22022553	.	-	0	Parent=Os03t0593200-01
Chr03	irgsp1_rep	CDS	22021580	22021759	.	-	0	Parent=Os03t0593200-01
Chr03	irgsp1_rep	CDS	22017825	22018090	.	-	0	Parent=Os03t0593200-01
Chr03	irgsp1_rep	CDS	22017571	22017580	.	-	1	Parent=Os03t0593200-01
Chr03	irgsp1_rep	three_prime_UTR	22017024	22017570	.	-	.	Parent=Os03t0593200-01
Chr03	irgsp1_rep	mRNA	22048470	22050253	.	+	.	ID=Os03t0593600-00;Name=Os03t0593600-00;Locus_id=Os03g0593600;CGSNL Gene Symbol=CYP71W1;CGSNL Gene Name=P-450 71W1;Oryzabase Gene Symbol Synonym(s)=CYP71W1;Oryzabase Gene Name Synonym(s)=CytoChrome P450 71W1;Note=Similar to CytoChrome P450 family protein%2C expressed.;Transcript_evidence=tplb0014m07 (Wheat FLcDNA);ORF_evidence=Q10HC4 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);Oryzabase=12428;TENOR=Os03t0593600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	22048470	22049378	.	+	0	Parent=Os03t0593600-00
Chr03	irgsp1_rep	CDS	22049524	22050150	.	+	0	Parent=Os03t0593600-00
Chr03	irgsp1_rep	three_prime_UTR	22050151	22050253	.	+	.	Parent=Os03t0593600-00
Chr03	irgsp1_rep	mRNA	22049521	22050069	.	-	.	ID=Os03t0593650-00;Name=Os03t0593650-00;Locus_id=Os03g0593650;Note=Non-protein coding transcript.;Transcript_evidence=EU942896 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0593650-00
Chr03	irgsp1_rep	exon	22049521	22050069	.	-	.	Parent=Os03t0593650-00
Chr03	irgsp1_rep	mRNA	22054387	22057136	.	-	.	ID=Os03t0593700-00;Name=Os03t0593700-00;Locus_id=Os03g0593700;Note=Hypothetical conserved gene.;Transcript_evidence=AK101468 (DDBJ%2C Secondary hit);ORF_evidence=NP_001173874.1 (RefSeq);Expression=AK101468;TENOR=Os03t0593700-00;KEGG=Os03t0593700-00
Chr03	irgsp1_rep	five_prime_UTR	22056084	22057136	.	-	.	Parent=Os03t0593700-00
Chr03	irgsp1_rep	CDS	22056055	22056083	.	-	0	Parent=Os03t0593700-00
Chr03	irgsp1_rep	CDS	22054660	22054831	.	-	1	Parent=Os03t0593700-00
Chr03	irgsp1_rep	three_prime_UTR	22054387	22054659	.	-	.	Parent=Os03t0593700-00
Chr03	irgsp1_rep	mRNA	22083215	22086165	.	+	.	ID=Os03t0594100-01;Name=Os03t0594100-01;Locus_id=Os03g0594100;Note=CytoChrome P450 family protein.;Transcript_evidence=AK111441 (DDBJ%2C Best hit);ORF_evidence=Q10HC4 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=002-183-A07;Expression=AK111441;TENOR=Os03t0594100-01;KEGG=Os03t0594100-01
Chr03	irgsp1_rep	five_prime_UTR	22083215	22083514	.	+	.	Parent=Os03t0594100-01
Chr03	irgsp1_rep	CDS	22083515	22084432	.	+	0	Parent=Os03t0594100-01
Chr03	irgsp1_rep	CDS	22085230	22085850	.	+	0	Parent=Os03t0594100-01
Chr03	irgsp1_rep	three_prime_UTR	22085851	22086165	.	+	.	Parent=Os03t0594100-01
Chr03	irgsp1_rep	mRNA	22083544	22085792	.	-	.	ID=Os03t0594250-00;Name=Os03t0594250-00;Locus_id=Os03g0594250;Note=Hypothetical protein.;Transcript_evidence=tplb0041k22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0594250-00
Chr03	irgsp1_rep	five_prime_UTR	22085313	22085792	.	-	.	Parent=Os03t0594250-00
Chr03	irgsp1_rep	CDS	22085225	22085312	.	-	0	Parent=Os03t0594250-00
Chr03	irgsp1_rep	CDS	22083593	22084428	.	-	2	Parent=Os03t0594250-00
Chr03	irgsp1_rep	three_prime_UTR	22083544	22083592	.	-	.	Parent=Os03t0594250-00
Chr03	irgsp1_rep	mRNA	22092018	22095340	.	-	.	ID=Os03t0594400-01;Name=Os03t0594400-01;Locus_id=Os03g0594400;CGSNL Gene Symbol=MST2;CGSNL Gene Name=MONOSACCHARIDE TRANSPORTER 2;Oryzabase Gene Symbol Synonym(s)=OsMST2;Oryzabase Gene Name Synonym(s)=monosaccharide transporter 2;Note=Monosaccharide transporter 2.;Transcript_evidence=AK071180 (DDBJ%2C Best hit);ORF_evidence=Q9FRT6 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J023082A15;Oryzabase=14507;Expression=AK071180;TENOR=Os03t0594400-01;KEGG=Os03t0594400-01
Chr03	irgsp1_rep	five_prime_UTR	22095217	22095340	.	-	.	Parent=Os03t0594400-01
Chr03	irgsp1_rep	CDS	22095078	22095216	.	-	0	Parent=Os03t0594400-01
Chr03	irgsp1_rep	CDS	22093666	22093988	.	-	2	Parent=Os03t0594400-01
Chr03	irgsp1_rep	CDS	22092935	22093582	.	-	0	Parent=Os03t0594400-01
Chr03	irgsp1_rep	CDS	22092151	22092609	.	-	0	Parent=Os03t0594400-01
Chr03	irgsp1_rep	three_prime_UTR	22092018	22092150	.	-	.	Parent=Os03t0594400-01
Chr03	irgsp1_rep	mRNA	22099628	22100277	.	+	.	ID=Os03t0594500-00;Name=Os03t0594500-00;Locus_id=Os03g0594500;Note=Hypothetical gene.;Transcript_evidence=AK288118 (DDBJ%2C Secondary hit);ORF_evidence=Q2QLI8 (UniProt);TENOR=Os03t0594500-00;KEGG=Os03t0594500-00
Chr03	irgsp1_rep	five_prime_UTR	22099628	22099660	.	+	.	Parent=Os03t0594500-00
Chr03	irgsp1_rep	CDS	22099661	22099729	.	+	0	Parent=Os03t0594500-00
Chr03	irgsp1_rep	CDS	22099781	22100104	.	+	0	Parent=Os03t0594500-00
Chr03	irgsp1_rep	three_prime_UTR	22100105	22100277	.	+	.	Parent=Os03t0594500-00
Chr03	irgsp1_rep	mRNA	22100401	22100952	.	+	.	ID=Os03t0594600-00;Name=Os03t0594600-00;Locus_id=Os03g0594600;Note=Similar to H0523F07.7 protein.;Transcript_evidence=EU966168 (DDBJ);ORF_evidence=Q01JQ6 (UniProt);TENOR=Os03t0594600-00
Chr03	irgsp1_rep	CDS	22100401	22100952	.	+	0	Parent=Os03t0594600-00
Chr03	irgsp1_rep	mRNA	22110421	22116473	.	-	.	ID=Os03t0594700-01;Name=Os03t0594700-01;Locus_id=Os03g0594700;Note=Conserved hypothetical protein.;Transcript_evidence=AK101832 (DDBJ%2C Best hit);ORF_evidence=A2XJ53 (UniProt);NIAS_FLcDNA=J033068L21;Expression=AK101832;TENOR=Os03t0594700-01;KEGG=Os03t0594700-01
Chr03	irgsp1_rep	five_prime_UTR	22116239	22116473	.	-	.	Parent=Os03t0594700-01
Chr03	irgsp1_rep	five_prime_UTR	22115954	22116148	.	-	.	Parent=Os03t0594700-01
Chr03	irgsp1_rep	five_prime_UTR	22115045	22115122	.	-	.	Parent=Os03t0594700-01
Chr03	irgsp1_rep	CDS	22114444	22115044	.	-	0	Parent=Os03t0594700-01
Chr03	irgsp1_rep	CDS	22112888	22114236	.	-	2	Parent=Os03t0594700-01
Chr03	irgsp1_rep	CDS	22112721	22112796	.	-	0	Parent=Os03t0594700-01
Chr03	irgsp1_rep	CDS	22112313	22112626	.	-	2	Parent=Os03t0594700-01
Chr03	irgsp1_rep	CDS	22111047	22111145	.	-	0	Parent=Os03t0594700-01
Chr03	irgsp1_rep	CDS	22110799	22110951	.	-	0	Parent=Os03t0594700-01
Chr03	irgsp1_rep	three_prime_UTR	22110421	22110798	.	-	.	Parent=Os03t0594700-01
Chr03	irgsp1_rep	mRNA	22123330	22125585	.	+	.	ID=Os03t0594900-01;Name=Os03t0594900-01;Locus_id=Os03g0594900;Note=CytoChrome P450 family protein.;Transcript_evidence=AK069017 (DDBJ%2C Best hit);ORF_evidence=B6SZ78 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J013170D06;Expression=AK069017;TENOR=Os03t0594900-01;KEGG=Os03t0594900-01
Chr03	irgsp1_rep	five_prime_UTR	22123330	22123378	.	+	.	Parent=Os03t0594900-01
Chr03	irgsp1_rep	CDS	22123379	22124305	.	+	0	Parent=Os03t0594900-01
Chr03	irgsp1_rep	CDS	22124800	22125420	.	+	0	Parent=Os03t0594900-01
Chr03	irgsp1_rep	three_prime_UTR	22125421	22125585	.	+	.	Parent=Os03t0594900-01
Chr03	irgsp1_rep	mRNA	22123371	22125465	.	-	.	ID=Os03t0595050-00;Name=Os03t0595050-00;Locus_id=Os03g0595050;Note=Hypothetical protein.;Transcript_evidence=tplb0041k22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0595050-00
Chr03	irgsp1_rep	five_prime_UTR	22124831	22125465	.	-	.	Parent=Os03t0595050-00
Chr03	irgsp1_rep	CDS	22124777	22124830	.	-	0	Parent=Os03t0595050-00
Chr03	irgsp1_rep	CDS	22123371	22124272	.	-	0	Parent=Os03t0595050-00
Chr03	irgsp1_rep	mRNA	22149230	22149920	.	+	.	ID=Os03t0595200-00;Name=Os03t0595200-00;Locus_id=Os03g0595200;Note=Similar to predicted protein.;Transcript_evidence=EU953820 (DDBJ);ORF_evidence=NP_001050595.1 (RefSeq);TENOR=Os03t0595200-00;KEGG=Os03t0595200-00
Chr03	irgsp1_rep	CDS	22149230	22149385	.	+	0	Parent=Os03t0595200-00
Chr03	irgsp1_rep	CDS	22149514	22149789	.	+	0	Parent=Os03t0595200-00
Chr03	irgsp1_rep	three_prime_UTR	22149790	22149920	.	+	.	Parent=Os03t0595200-00
Chr03	irgsp1_rep	mRNA	22150420	22151574	.	-	.	ID=Os03t0595300-01;Name=Os03t0595300-01;Locus_id=Os03g0595300;Note=Conserved hypothetical protein.;Transcript_evidence=AK065923 (DDBJ%2C Best hit);ORF_evidence=B8ALP5 (UniProt);NIAS_FLcDNA=J013048M24;Expression=AK065923;TENOR=Os03t0595300-01;KEGG=Os03t0595300-01
Chr03	irgsp1_rep	five_prime_UTR	22151510	22151574	.	-	.	Parent=Os03t0595300-01
Chr03	irgsp1_rep	CDS	22151368	22151509	.	-	0	Parent=Os03t0595300-01
Chr03	irgsp1_rep	CDS	22151036	22151105	.	-	2	Parent=Os03t0595300-01
Chr03	irgsp1_rep	CDS	22150722	22150866	.	-	1	Parent=Os03t0595300-01
Chr03	irgsp1_rep	three_prime_UTR	22150420	22150721	.	-	.	Parent=Os03t0595300-01
Chr03	irgsp1_rep	mRNA	22160411	22161462	.	-	.	ID=Os03t0595600-00;Name=Os03t0595600-00;Locus_id=Os03g0595600;CGSNL Gene Symbol=GSTU43;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 43;Oryzabase Gene Symbol Synonym(s)=OsGSTU43;Note=Similar to Glutathione S-transferase%2C N-terminal domain containing protein%2C expressed.;Transcript_evidence=AK366075 (DDBJ);ORF_evidence=Q10HA8 (UniProt);InterPro=Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);Oryzabase=9560;TENOR=Os03t0595600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	22161383	22161462	.	-	.	Parent=Os03t0595600-00
Chr03	irgsp1_rep	CDS	22161150	22161382	.	-	0	Parent=Os03t0595600-00
Chr03	irgsp1_rep	CDS	22160432	22160813	.	-	1	Parent=Os03t0595600-00
Chr03	irgsp1_rep	three_prime_UTR	22160411	22160431	.	-	.	Parent=Os03t0595600-00
Chr03	irgsp1_rep	mRNA	22164727	22169919	.	-	.	ID=Os03t0595800-01;Name=Os03t0595800-01;Locus_id=Os03g0595800;Note=Similar to Acyl carrier protein (ACP).;Transcript_evidence=AK060566 (DDBJ%2C Best hit);ORF_evidence=A3AK43 (UniProt);NIAS_FLcDNA=001-023-A01;Expression=AK060566;TENOR=Os03t0595800-01;KEGG=Os03t0595800-01
Chr03	irgsp1_rep	five_prime_UTR	22169799	22169919	.	-	.	Parent=Os03t0595800-01
Chr03	irgsp1_rep	five_prime_UTR	22168518	22168920	.	-	.	Parent=Os03t0595800-01
Chr03	irgsp1_rep	CDS	22168269	22168517	.	-	0	Parent=Os03t0595800-01
Chr03	irgsp1_rep	CDS	22165825	22165905	.	-	0	Parent=Os03t0595800-01
Chr03	irgsp1_rep	three_prime_UTR	22164727	22165079	.	-	.	Parent=Os03t0595800-01
Chr03	irgsp1_rep	mRNA	22171726	22174047	.	-	.	ID=Os03t0596101-01;Name=Os03t0596101-01;Locus_id=Os03g0596101;Note=Conserved hypothetical protein.;Transcript_evidence=AK242927 (DDBJ%2C Best hit);ORF_evidence=NP_001173521.1 (RefSeq);NIAS_FLcDNA=J090085H14;TENOR=Os03t0596101-01;KEGG=Os03t0596101-01
Chr03	irgsp1_rep	five_prime_UTR	22172636	22174047	.	-	.	Parent=Os03t0596101-01
Chr03	irgsp1_rep	CDS	22172309	22172635	.	-	0	Parent=Os03t0596101-01
Chr03	irgsp1_rep	three_prime_UTR	22171726	22172308	.	-	.	Parent=Os03t0596101-01
Chr03	irgsp1_rep	mRNA	22173113	22174947	.	+	.	ID=Os03t0596200-01;Name=Os03t0596200-01;Locus_id=Os03g0596200;Note=Zinc finger%2C CCHC-type domain containing protein.;Transcript_evidence=AK109832 (DDBJ%2C Best hit);ORF_evidence=B9F9J9 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Zinc finger%2C CCHC retroviral-type (IPR013084);NIAS_FLcDNA=002-148-C08;TENOR=Os03t0596200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	22173113	22173187	.	+	.	Parent=Os03t0596200-01
Chr03	irgsp1_rep	CDS	22173188	22174336	.	+	0	Parent=Os03t0596200-01
Chr03	irgsp1_rep	three_prime_UTR	22174337	22174947	.	+	.	Parent=Os03t0596200-01
Chr03	irgsp1_rep	mRNA	22184257	22187943	.	-	.	ID=Os03t0596400-01;Name=Os03t0596400-01;Locus_id=Os03g0596400;Note=Conserved hypothetical protein.;Transcript_evidence=AK107535 (DDBJ%2C Best hit);ORF_evidence=B8ALP9 (UniProt);NIAS_FLcDNA=002-129-H03;TENOR=Os03t0596400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	22186123	22187943	.	-	.	Parent=Os03t0596400-01
Chr03	irgsp1_rep	CDS	22185811	22186122	.	-	0	Parent=Os03t0596400-01
Chr03	irgsp1_rep	three_prime_UTR	22185530	22185810	.	-	.	Parent=Os03t0596400-01
Chr03	irgsp1_rep	three_prime_UTR	22184257	22184670	.	-	.	Parent=Os03t0596400-01
Chr03	irgsp1_rep	mRNA	22204030	22207200	.	+	.	ID=Os03t0596600-01;Name=Os03t0596600-01;Locus_id=Os03g0596600;Note=Zinc finger%2C CCHC-type domain containing protein.;Transcript_evidence=AK105613 (DDBJ%2C Best hit);ORF_evidence=Q2QQG4 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Zinc finger%2C CCHC retroviral-type (IPR013084);NIAS_FLcDNA=001-200-B08;TENOR=Os03t0596600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	22204030	22204213	.	+	.	Parent=Os03t0596600-01
Chr03	irgsp1_rep	five_prime_UTR	22204609	22204858	.	+	.	Parent=Os03t0596600-01
Chr03	irgsp1_rep	CDS	22204859	22205794	.	+	0	Parent=Os03t0596600-01
Chr03	irgsp1_rep	three_prime_UTR	22205795	22206630	.	+	.	Parent=Os03t0596600-01
Chr03	irgsp1_rep	three_prime_UTR	22206793	22207200	.	+	.	Parent=Os03t0596600-01
Chr03	irgsp1_rep	mRNA	22213638	22214408	.	+	.	ID=Os03t0596700-00;Name=Os03t0596700-00;Locus_id=Os03g0596700;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10H95 (UniProt);TENOR=Os03t0596700-00;KEGG=Os03t0596700-00
Chr03	irgsp1_rep	CDS	22213638	22214408	.	+	0	Parent=Os03t0596700-00
Chr03	irgsp1_rep	mRNA	22216238	22217762	.	-	.	ID=Os03t0596800-01;Name=Os03t0596800-01;Locus_id=Os03g0596800;Note=Conserved hypothetical protein.;Transcript_evidence=AK073603 (DDBJ%2C Best hit);ORF_evidence=Q84TZ4 (UniProt);NIAS_FLcDNA=J033052N01;Expression=AK073603;TENOR=Os03t0596800-01;KEGG=Os03t0596800-01
Chr03	irgsp1_rep	five_prime_UTR	22217761	22217762	.	-	.	Parent=Os03t0596800-01
Chr03	irgsp1_rep	CDS	22217596	22217760	.	-	0	Parent=Os03t0596800-01
Chr03	irgsp1_rep	CDS	22217150	22217482	.	-	0	Parent=Os03t0596800-01
Chr03	irgsp1_rep	three_prime_UTR	22216238	22217149	.	-	.	Parent=Os03t0596800-01
Chr03	irgsp1_rep	mRNA	22219267	22227186	.	-	.	ID=Os03t0596900-01;Name=Os03t0596900-01;Locus_id=Os03g0596900;Note=GTP-binding signal recognition particle SRP54%2C G-domain containing protein.;Transcript_evidence=AK073607 (DDBJ%2C Best hit),AK099029 (DDBJ%2C Best hit);ORF_evidence=Q84TZ6 (UniProt);InterPro=DEK%2C C-terminal (IPR014876);NIAS_FLcDNA=J033048A10,J013123J21;TENOR=Os03t0596900-01
Chr03	irgsp1_rep	five_prime_UTR	22227050	22227186	.	-	.	Parent=Os03t0596900-01
Chr03	irgsp1_rep	five_prime_UTR	22226363	22226386	.	-	.	Parent=Os03t0596900-01
Chr03	irgsp1_rep	CDS	22225367	22226362	.	-	0	Parent=Os03t0596900-01
Chr03	irgsp1_rep	CDS	22225255	22225288	.	-	0	Parent=Os03t0596900-01
Chr03	irgsp1_rep	CDS	22223718	22223794	.	-	2	Parent=Os03t0596900-01
Chr03	irgsp1_rep	CDS	22223056	22223115	.	-	0	Parent=Os03t0596900-01
Chr03	irgsp1_rep	CDS	22222839	22222949	.	-	0	Parent=Os03t0596900-01
Chr03	irgsp1_rep	CDS	22222641	22222719	.	-	0	Parent=Os03t0596900-01
Chr03	irgsp1_rep	CDS	22222444	22222496	.	-	2	Parent=Os03t0596900-01
Chr03	irgsp1_rep	CDS	22221815	22222202	.	-	0	Parent=Os03t0596900-01
Chr03	irgsp1_rep	CDS	22221160	22221269	.	-	2	Parent=Os03t0596900-01
Chr03	irgsp1_rep	CDS	22219901	22219931	.	-	0	Parent=Os03t0596900-01
Chr03	irgsp1_rep	CDS	22219615	22219787	.	-	2	Parent=Os03t0596900-01
Chr03	irgsp1_rep	three_prime_UTR	22219267	22219614	.	-	.	Parent=Os03t0596900-01
Chr03	irgsp1_rep	mRNA	22219267	22227139	.	-	.	ID=Os03t0596900-02;Name=Os03t0596900-02;Locus_id=Os03g0596900;Note=Hypothetical conserved gene.;Transcript_evidence=AK101999 (DDBJ%2C Best hit);ORF_evidence=Q84TZ6 (UniProt);NIAS_FLcDNA=J033079L16;Expression=AK101999;TENOR=Os03t0596900-02;KEGG=Os03t0596900-02
Chr03	irgsp1_rep	five_prime_UTR	22227050	22227139	.	-	.	Parent=Os03t0596900-02
Chr03	irgsp1_rep	five_prime_UTR	22226363	22226386	.	-	.	Parent=Os03t0596900-02
Chr03	irgsp1_rep	CDS	22225367	22226362	.	-	0	Parent=Os03t0596900-02
Chr03	irgsp1_rep	CDS	22225255	22225288	.	-	0	Parent=Os03t0596900-02
Chr03	irgsp1_rep	CDS	22223716	22223794	.	-	2	Parent=Os03t0596900-02
Chr03	irgsp1_rep	CDS	22223108	22223111	.	-	1	Parent=Os03t0596900-02
Chr03	irgsp1_rep	three_prime_UTR	22223056	22223107	.	-	.	Parent=Os03t0596900-02
Chr03	irgsp1_rep	three_prime_UTR	22222839	22222949	.	-	.	Parent=Os03t0596900-02
Chr03	irgsp1_rep	three_prime_UTR	22222641	22222719	.	-	.	Parent=Os03t0596900-02
Chr03	irgsp1_rep	three_prime_UTR	22222444	22222496	.	-	.	Parent=Os03t0596900-02
Chr03	irgsp1_rep	three_prime_UTR	22221815	22222202	.	-	.	Parent=Os03t0596900-02
Chr03	irgsp1_rep	three_prime_UTR	22221160	22221269	.	-	.	Parent=Os03t0596900-02
Chr03	irgsp1_rep	three_prime_UTR	22219901	22219931	.	-	.	Parent=Os03t0596900-02
Chr03	irgsp1_rep	three_prime_UTR	22219267	22219787	.	-	.	Parent=Os03t0596900-02
Chr03	irgsp1_rep	mRNA	22219267	22222046	.	-	.	ID=Os03t0596900-03;Name=Os03t0596900-03;Locus_id=Os03g0596900;Note=Hypothetical conserved gene.;Transcript_evidence=AK104029 (DDBJ%2C Best hit);ORF_evidence=Q84TZ6 (UniProt);InterPro=DEK%2C C-terminal (IPR014876);NIAS_FLcDNA=001-020-B06;Expression=AK104029;TENOR=Os03t0596900-03;KEGG=Os03t0596900-03
Chr03	irgsp1_rep	CDS	22221815	22222046	.	-	0	Parent=Os03t0596900-03
Chr03	irgsp1_rep	CDS	22221160	22221269	.	-	2	Parent=Os03t0596900-03
Chr03	irgsp1_rep	CDS	22219901	22219931	.	-	0	Parent=Os03t0596900-03
Chr03	irgsp1_rep	CDS	22219615	22219787	.	-	2	Parent=Os03t0596900-03
Chr03	irgsp1_rep	three_prime_UTR	22219267	22219614	.	-	.	Parent=Os03t0596900-03
Chr03	irgsp1_rep	mRNA	22233268	22238894	.	-	.	ID=Os03t0597200-01;Name=Os03t0597200-01;Locus_id=Os03g0597200;RAP-DB Gene Symbol Synonym(s)=YSA;RAP-DB Gene Name Synonym(s)=young seedling albino;Oryzabase Gene Symbol Synonym(s)=YSA;Oryzabase Gene Name Synonym(s)=young seedling albino;Note=Pentatricopeptide repeat protein%2C Chloroplast development;Transcript_evidence=JN167987 (Pei'ai64s);ORF_evidence=H9NAL2;GO=Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical domain (IPR011990),Pentatricopeptide repeat (IPR002885);Manual Curation=August 29%2C 2014;Literature_PMID=22430843;Oryzabase=14314;TENOR=Os03t0597200-01
Chr03	irgsp1_rep	five_prime_UTR	22238597	22238894	.	-	.	Parent=Os03t0597200-01
Chr03	irgsp1_rep	CDS	22236368	22238596	.	-	0	Parent=Os03t0597200-01
Chr03	irgsp1_rep	three_prime_UTR	22233268	22236367	.	-	.	Parent=Os03t0597200-01
Chr03	irgsp1_rep	mRNA	22243187	22244608	.	-	.	ID=Os03t0597400-01;Name=Os03t0597400-01;Locus_id=Os03g0597400;Note=Protein of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK108626 (DDBJ%2C Best hit);ORF_evidence=Q84TY9 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=002-147-E03;Expression=AK108626;TENOR=Os03t0597400-01;KEGG=Os03t0597400-01
Chr03	irgsp1_rep	five_prime_UTR	22244608	22244608	.	-	.	Parent=Os03t0597400-01
Chr03	irgsp1_rep	CDS	22243246	22244607	.	-	0	Parent=Os03t0597400-01
Chr03	irgsp1_rep	three_prime_UTR	22243187	22243245	.	-	.	Parent=Os03t0597400-01
Chr03	irgsp1_rep	mRNA	22251068	22253999	.	-	.	ID=Os03t0597450-01;Name=Os03t0597450-01;Locus_id=Os03g0597450;Note=Hypothetical conserved gene.;Transcript_evidence=AK242356 (DDBJ%2C Best hit);ORF_evidence=B8ALQ9 (UniProt);NIAS_FLcDNA=J080018P04;TENOR=Os03t0597450-01;KEGG=Os03t0597450-01
Chr03	irgsp1_rep	five_prime_UTR	22253440	22253999	.	-	.	Parent=Os03t0597450-01
Chr03	irgsp1_rep	CDS	22253425	22253439	.	-	0	Parent=Os03t0597450-01
Chr03	irgsp1_rep	CDS	22251301	22251477	.	-	0	Parent=Os03t0597450-01
Chr03	irgsp1_rep	three_prime_UTR	22251068	22251300	.	-	.	Parent=Os03t0597450-01
Chr03	irgsp1_rep	mRNA	22255220	22259151	.	-	.	ID=Os03t0597600-01;Name=Os03t0597600-01;Locus_id=Os03g0597600;CGSNL Gene Symbol=ASNASE1;CGSNL Gene Name=ASPARAGINASE 1;Oryzabase Gene Symbol Synonym(s)=OsASNase1%2C ASNase1;Oryzabase Gene Name Synonym(s)=asparaginase1%2C asparaginase 1;Note=Similar to L-asparaginase (EC 3.5.1.1) (L-asparagine amidohydrolase).;Transcript_evidence=AK069458 (DDBJ%2C Best hit);ORF_evidence=NP_001149875.1 (RefSeq);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Peptidase T2%2C asparaginase 2 (IPR000246);NIAS_FLcDNA=J023020F03;Oryzabase=21605;Expression=AK069458;TENOR=Os03t0597600-01;KEGG=Os03t0597600-01 (EC:3.4.19.5%2C EC:3.5.1.1)
Chr03	irgsp1_rep	five_prime_UTR	22259100	22259151	.	-	.	Parent=Os03t0597600-01
Chr03	irgsp1_rep	CDS	22258938	22259099	.	-	0	Parent=Os03t0597600-01
Chr03	irgsp1_rep	CDS	22258596	22258829	.	-	0	Parent=Os03t0597600-01
Chr03	irgsp1_rep	CDS	22256724	22256810	.	-	0	Parent=Os03t0597600-01
Chr03	irgsp1_rep	CDS	22255401	22255871	.	-	0	Parent=Os03t0597600-01
Chr03	irgsp1_rep	three_prime_UTR	22255220	22255400	.	-	.	Parent=Os03t0597600-01
Chr03	irgsp1_rep	mRNA	22262059	22266748	.	-	.	ID=Os03t0597800-01;Name=Os03t0597800-01;Locus_id=Os03g0597800;Note=Hypothetical conserved gene.;Transcript_evidence=AK107788 (DDBJ%2C Best hit);ORF_evidence=B9F9K6 (UniProt);NIAS_FLcDNA=002-133-D02;Expression=AK107788;TENOR=Os03t0597800-01;KEGG=Os03t0597800-01
Chr03	irgsp1_rep	five_prime_UTR	22266523	22266748	.	-	.	Parent=Os03t0597800-01
Chr03	irgsp1_rep	five_prime_UTR	22262535	22262559	.	-	.	Parent=Os03t0597800-01
Chr03	irgsp1_rep	CDS	22262460	22262534	.	-	0	Parent=Os03t0597800-01
Chr03	irgsp1_rep	CDS	22262252	22262374	.	-	0	Parent=Os03t0597800-01
Chr03	irgsp1_rep	three_prime_UTR	22262059	22262251	.	-	.	Parent=Os03t0597800-01
Chr03	irgsp1_rep	mRNA	22271544	22272752	.	+	.	ID=Os03t0598002-00;Name=Os03t0598002-00;Locus_id=Os03g0598002;Note=Hypothetical gene.;Transcript_evidence=CT835091 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os03t0598002-00;KEGG=Os03t0598002-00
Chr03	irgsp1_rep	five_prime_UTR	22271544	22272020	.	+	.	Parent=Os03t0598002-00
Chr03	irgsp1_rep	CDS	22272021	22272581	.	+	0	Parent=Os03t0598002-00
Chr03	irgsp1_rep	three_prime_UTR	22272582	22272752	.	+	.	Parent=Os03t0598002-00
Chr03	irgsp1_rep	mRNA	22281686	22284615	.	+	.	ID=Os03t0598100-01;Name=Os03t0598100-01;Locus_id=Os03g0598100;CGSNL Gene Symbol=ACR5;CGSNL Gene Name=ACT DOMAIN REPEAT PROTEIN 5;Oryzabase Gene Symbol Synonym(s)=OsACR5;Oryzabase Gene Name Synonym(s)=ACT-domain repeat protein 5;Note=Similar to ACR4.;Transcript_evidence=AK071010 (DDBJ%2C Best hit);ORF_evidence=B4F9T0 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: amino acid binding (GO:0016597);InterPro=Amino acid-binding ACT (IPR002912);NIAS_FLcDNA=J023080P13;Oryzabase=7255;Expression=AK071010;TENOR=Os03t0598100-01;KEGG=Os03t0598100-01
Chr03	irgsp1_rep	five_prime_UTR	22281686	22281962	.	+	.	Parent=Os03t0598100-01
Chr03	irgsp1_rep	CDS	22281963	22281972	.	+	0	Parent=Os03t0598100-01
Chr03	irgsp1_rep	CDS	22282361	22282433	.	+	2	Parent=Os03t0598100-01
Chr03	irgsp1_rep	CDS	22282551	22282596	.	+	1	Parent=Os03t0598100-01
Chr03	irgsp1_rep	CDS	22282739	22282853	.	+	0	Parent=Os03t0598100-01
Chr03	irgsp1_rep	CDS	22282947	22283026	.	+	2	Parent=Os03t0598100-01
Chr03	irgsp1_rep	CDS	22283122	22283721	.	+	0	Parent=Os03t0598100-01
Chr03	irgsp1_rep	CDS	22283818	22283922	.	+	0	Parent=Os03t0598100-01
Chr03	irgsp1_rep	CDS	22284016	22284348	.	+	0	Parent=Os03t0598100-01
Chr03	irgsp1_rep	three_prime_UTR	22284349	22284615	.	+	.	Parent=Os03t0598100-01
Chr03	irgsp1_rep	mRNA	22281700	22284411	.	-	.	ID=Os03t0598150-00;Name=Os03t0598150-00;Locus_id=Os03g0598150;Note=Hypothetical protein.;Transcript_evidence=tplb0061b06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0598150-00
Chr03	irgsp1_rep	five_prime_UTR	22283990	22284411	.	-	.	Parent=Os03t0598150-00
Chr03	irgsp1_rep	five_prime_UTR	22283836	22283896	.	-	.	Parent=Os03t0598150-00
Chr03	irgsp1_rep	CDS	22283816	22283835	.	-	0	Parent=Os03t0598150-00
Chr03	irgsp1_rep	CDS	22283164	22283719	.	-	1	Parent=Os03t0598150-00
Chr03	irgsp1_rep	three_prime_UTR	22283064	22283163	.	-	.	Parent=Os03t0598150-00
Chr03	irgsp1_rep	three_prime_UTR	22282710	22282876	.	-	.	Parent=Os03t0598150-00
Chr03	irgsp1_rep	three_prime_UTR	22282359	22282449	.	-	.	Parent=Os03t0598150-00
Chr03	irgsp1_rep	three_prime_UTR	22281700	22281970	.	-	.	Parent=Os03t0598150-00
Chr03	irgsp1_rep	mRNA	22285710	22292616	.	-	.	ID=Os03t0598200-01;Name=Os03t0598200-01;Locus_id=Os03g0598200;Note=Nop14-like protein family protein.;Transcript_evidence=AK068322 (DDBJ%2C Best hit);ORF_evidence=Q10H82 (UniProt);InterPro=Nop14-like protein (IPR007276);NIAS_FLcDNA=J013150A21;Expression=AK068322;TENOR=Os03t0598200-01;KEGG=Os03t0598200-01
Chr03	irgsp1_rep	five_prime_UTR	22292563	22292616	.	-	.	Parent=Os03t0598200-01
Chr03	irgsp1_rep	CDS	22292544	22292562	.	-	0	Parent=Os03t0598200-01
Chr03	irgsp1_rep	CDS	22292287	22292423	.	-	2	Parent=Os03t0598200-01
Chr03	irgsp1_rep	CDS	22292049	22292183	.	-	0	Parent=Os03t0598200-01
Chr03	irgsp1_rep	CDS	22291573	22291711	.	-	0	Parent=Os03t0598200-01
Chr03	irgsp1_rep	CDS	22290706	22290788	.	-	2	Parent=Os03t0598200-01
Chr03	irgsp1_rep	CDS	22290563	22290622	.	-	0	Parent=Os03t0598200-01
Chr03	irgsp1_rep	CDS	22289526	22289717	.	-	0	Parent=Os03t0598200-01
Chr03	irgsp1_rep	CDS	22288962	22289090	.	-	0	Parent=Os03t0598200-01
Chr03	irgsp1_rep	CDS	22287993	22288658	.	-	0	Parent=Os03t0598200-01
Chr03	irgsp1_rep	CDS	22287661	22287853	.	-	0	Parent=Os03t0598200-01
Chr03	irgsp1_rep	CDS	22287372	22287565	.	-	2	Parent=Os03t0598200-01
Chr03	irgsp1_rep	CDS	22287129	22287233	.	-	0	Parent=Os03t0598200-01
Chr03	irgsp1_rep	CDS	22286908	22287050	.	-	0	Parent=Os03t0598200-01
Chr03	irgsp1_rep	CDS	22286548	22286826	.	-	1	Parent=Os03t0598200-01
Chr03	irgsp1_rep	CDS	22286176	22286440	.	-	1	Parent=Os03t0598200-01
Chr03	irgsp1_rep	three_prime_UTR	22285710	22286175	.	-	.	Parent=Os03t0598200-01
Chr03	irgsp1_rep	mRNA	22314163	22314445	.	-	.	ID=Os03t0598600-00;Name=Os03t0598600-00;Locus_id=Os03g0598600;Note=Non-protein coding transcript.;Transcript_evidence=CT834365 (DDBJ%2C Secondary hit);ORF_evidence=NONE;TENOR=Os03t0598600-00
Chr03	irgsp1_rep	exon	22314163	22314445	.	-	.	Parent=Os03t0598600-00
Chr03	irgsp1_rep	mRNA	22332335	22335094	.	+	.	ID=Os03t0598700-01;Name=Os03t0598700-01;Locus_id=Os03g0598700;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK108026 (DDBJ%2C Best hit);ORF_evidence=NP_001148744.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=002-137-A02;Expression=AK108026;TENOR=Os03t0598700-01;KEGG=Os03t0598700-01
Chr03	irgsp1_rep	five_prime_UTR	22332335	22332630	.	+	.	Parent=Os03t0598700-01
Chr03	irgsp1_rep	five_prime_UTR	22332791	22332964	.	+	.	Parent=Os03t0598700-01
Chr03	irgsp1_rep	CDS	22332965	22333069	.	+	0	Parent=Os03t0598700-01
Chr03	irgsp1_rep	CDS	22333766	22334165	.	+	0	Parent=Os03t0598700-01
Chr03	irgsp1_rep	CDS	22334570	22334679	.	+	2	Parent=Os03t0598700-01
Chr03	irgsp1_rep	CDS	22334771	22334797	.	+	0	Parent=Os03t0598700-01
Chr03	irgsp1_rep	three_prime_UTR	22334798	22335094	.	+	.	Parent=Os03t0598700-01
Chr03	irgsp1_rep	mRNA	22336711	22338322	.	-	.	ID=Os03t0598800-01;Name=Os03t0598800-01;Locus_id=Os03g0598800;CGSNL Gene Symbol=RPL15;CGSNL Gene Name=RIBOSOMAL PROTEIN L15;Oryzabase Gene Symbol Synonym(s)=OsRPL15;Oryzabase Gene Name Synonym(s)=ribosomal protein L15%2C ribosomal protein large subunit 15;Note=Similar to Ribosomal protein L15.;Transcript_evidence=AK066806 (DDBJ%2C Best hit);ORF_evidence=B9FNL6 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L15e (IPR000439),Ribosomal protein L23/L15e (IPR012678),Ribosomal protein L15e%2C conserved site (IPR020925);NIAS_FLcDNA=J013079I04;Oryzabase=22196;Expression=AK066806;TENOR=Os03t0598800-01;KEGG=Os03t0598800-01
Chr03	irgsp1_rep	five_prime_UTR	22338321	22338322	.	-	.	Parent=Os03t0598800-01
Chr03	irgsp1_rep	CDS	22338247	22338320	.	-	0	Parent=Os03t0598800-01
Chr03	irgsp1_rep	CDS	22337970	22338081	.	-	1	Parent=Os03t0598800-01
Chr03	irgsp1_rep	CDS	22337227	22337424	.	-	0	Parent=Os03t0598800-01
Chr03	irgsp1_rep	CDS	22336889	22337134	.	-	0	Parent=Os03t0598800-01
Chr03	irgsp1_rep	three_prime_UTR	22336711	22336888	.	-	.	Parent=Os03t0598800-01
Chr03	irgsp1_rep	mRNA	22336686	22338318	.	-	.	ID=Os03t0598800-02;Name=Os03t0598800-02;Locus_id=Os03g0598800;CGSNL Gene Symbol=RPL15;CGSNL Gene Name=RIBOSOMAL PROTEIN L15;Oryzabase Gene Symbol Synonym(s)=OsRPL15;Oryzabase Gene Name Synonym(s)=ribosomal protein L15%2C ribosomal protein large subunit 15;Note=Similar to 60S ribosomal protein L15.;Transcript_evidence=AK060928 (DDBJ%2C Best hit),AK104774 (DDBJ%2C Best hit),AK121762 (DDBJ%2C Best hit);ORF_evidence=A2XJ89 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L15e (IPR000439),Ribosomal protein L23/L15e (IPR012678),Ribosomal protein L15e%2C conserved site (IPR020925);NIAS_FLcDNA=006-201-A06,001-039-B07,J033090F15;Oryzabase=22196;Expression=AK060928;TENOR=Os03t0598800-02;KEGG=Os03t0598800-02
Chr03	irgsp1_rep	five_prime_UTR	22338251	22338318	.	-	.	Parent=Os03t0598800-02
Chr03	irgsp1_rep	CDS	22338247	22338250	.	-	0	Parent=Os03t0598800-02
Chr03	irgsp1_rep	CDS	22337970	22338136	.	-	2	Parent=Os03t0598800-02
Chr03	irgsp1_rep	CDS	22337227	22337424	.	-	0	Parent=Os03t0598800-02
Chr03	irgsp1_rep	CDS	22336889	22337134	.	-	0	Parent=Os03t0598800-02
Chr03	irgsp1_rep	three_prime_UTR	22336686	22336888	.	-	.	Parent=Os03t0598800-02
Chr03	irgsp1_rep	mRNA	22341131	22345527	.	-	.	ID=Os03t0598900-01;Name=Os03t0598900-01;Locus_id=Os03g0598900;Note=Similar to predicted protein.;Transcript_evidence=AK241057 (DDBJ%2C Best hit);ORF_evidence=Q10H75 (UniProt);GO=Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=DSBA-like thioredoxin domain (IPR001853),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=J065063O13;TENOR=Os03t0598900-01;KEGG=Os03t0598900-01
Chr03	irgsp1_rep	five_prime_UTR	22345473	22345527	.	-	.	Parent=Os03t0598900-01
Chr03	irgsp1_rep	CDS	22345345	22345472	.	-	0	Parent=Os03t0598900-01
Chr03	irgsp1_rep	CDS	22343196	22343334	.	-	1	Parent=Os03t0598900-01
Chr03	irgsp1_rep	CDS	22342995	22343117	.	-	0	Parent=Os03t0598900-01
Chr03	irgsp1_rep	CDS	22342868	22342911	.	-	0	Parent=Os03t0598900-01
Chr03	irgsp1_rep	CDS	22342670	22342795	.	-	1	Parent=Os03t0598900-01
Chr03	irgsp1_rep	CDS	22341739	22341823	.	-	1	Parent=Os03t0598900-01
Chr03	irgsp1_rep	CDS	22341589	22341645	.	-	0	Parent=Os03t0598900-01
Chr03	irgsp1_rep	CDS	22341373	22341462	.	-	0	Parent=Os03t0598900-01
Chr03	irgsp1_rep	three_prime_UTR	22341131	22341372	.	-	.	Parent=Os03t0598900-01
Chr03	irgsp1_rep	mRNA	22347751	22351524	.	-	.	ID=Os03t0599000-01;Name=Os03t0599000-01;Locus_id=Os03g0599000;Note=NB-ARC domain containing protein.;Transcript_evidence=AK240984 (DDBJ%2C Best hit);ORF_evidence=Q10H75 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: protein binding (GO:0005515),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),Leucine-rich repeat (IPR001611),NB-ARC (IPR002182);NIAS_FLcDNA=J065050H23;TENOR=Os03t0599000-01;KEGG=Os03t0599000-01
Chr03	irgsp1_rep	five_prime_UTR	22350429	22351524	.	-	.	Parent=Os03t0599000-01
Chr03	irgsp1_rep	CDS	22347903	22350428	.	-	0	Parent=Os03t0599000-01
Chr03	irgsp1_rep	three_prime_UTR	22347751	22347902	.	-	.	Parent=Os03t0599000-01
Chr03	irgsp1_rep	mRNA	22369319	22371235	.	-	.	ID=Os03t0599400-01;Name=Os03t0599400-01;Locus_id=Os03g0599400;Note=NB-ARC domain containing protein.;Transcript_evidence=AK106733 (DDBJ%2C Best hit);ORF_evidence=Q8H8S8 (UniProt);NIAS_FLcDNA=002-114-H12;Expression=AK106733;TENOR=Os03t0599400-01;KEGG=Os03t0599400-01
Chr03	irgsp1_rep	five_prime_UTR	22371234	22371235	.	-	.	Parent=Os03t0599400-01
Chr03	irgsp1_rep	CDS	22369461	22371233	.	-	0	Parent=Os03t0599400-01
Chr03	irgsp1_rep	three_prime_UTR	22369319	22369460	.	-	.	Parent=Os03t0599400-01
Chr03	irgsp1_rep	mRNA	22369431	22371227	.	+	.	ID=Os03t0599500-01;Name=Os03t0599500-01;Locus_id=Os03g0599500;Note=Hypothetical protein.;Transcript_evidence=AK109872 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-149-B02;Expression=AK109872;TENOR=Os03t0599500-01;KEGG=Os03t0599500-01
Chr03	irgsp1_rep	five_prime_UTR	22369431	22369500	.	+	.	Parent=Os03t0599500-01
Chr03	irgsp1_rep	CDS	22369501	22370088	.	+	0	Parent=Os03t0599500-01
Chr03	irgsp1_rep	three_prime_UTR	22370089	22371227	.	+	.	Parent=Os03t0599500-01
Chr03	irgsp1_rep	mRNA	22372945	22380120	.	+	.	ID=Os03t0599600-01;Name=Os03t0599600-01;Locus_id=Os03g0599600;Note=Regulator of Chromosome condensation%2C RCC1 domain containing protein.;Transcript_evidence=AK066487 (DDBJ%2C Best hit);ORF_evidence=B9F9L5 (UniProt);InterPro=Regulator of Chromosome condensation%2C RCC1 (IPR000408),Regulator of Chromosome condensation/beta-lactamase-inhibitor protein II (IPR009091);NIAS_FLcDNA=J013070G16;TENOR=Os03t0599600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	22372945	22373058	.	+	.	Parent=Os03t0599600-01
Chr03	irgsp1_rep	CDS	22373059	22373122	.	+	0	Parent=Os03t0599600-01
Chr03	irgsp1_rep	CDS	22373764	22373886	.	+	2	Parent=Os03t0599600-01
Chr03	irgsp1_rep	CDS	22374396	22374589	.	+	2	Parent=Os03t0599600-01
Chr03	irgsp1_rep	CDS	22374675	22374722	.	+	0	Parent=Os03t0599600-01
Chr03	irgsp1_rep	CDS	22377191	22377263	.	+	0	Parent=Os03t0599600-01
Chr03	irgsp1_rep	CDS	22378770	22378840	.	+	2	Parent=Os03t0599600-01
Chr03	irgsp1_rep	three_prime_UTR	22378841	22379215	.	+	.	Parent=Os03t0599600-01
Chr03	irgsp1_rep	three_prime_UTR	22379327	22379518	.	+	.	Parent=Os03t0599600-01
Chr03	irgsp1_rep	three_prime_UTR	22379814	22380120	.	+	.	Parent=Os03t0599600-01
Chr03	irgsp1_rep	mRNA	22380317	22380384	.	+	.	ID=Os03t0599700-00;Name=Os03t0599700-00;Locus_id=Os03g0599700;Note=Non-protein coding transcript.;Transcript_evidence=X06283 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0599700-00
Chr03	irgsp1_rep	exon	22380317	22380384	.	+	.	Parent=Os03t0599700-00
Chr03	irgsp1_rep	mRNA	22381361	22383926	.	-	.	ID=Os03t0599800-01;Name=Os03t0599800-01;Locus_id=Os03g0599800;CGSNL Gene Symbol=UAM1;CGSNL Gene Name=UDP-ARABINOPYRANOSE MUTASE 1;Oryzabase Gene Symbol Synonym(s)=OsUAM1%2C RGP-1%2C Osgls1;Oryzabase Gene Name Synonym(s)=UDP-Arabinopyranose Mutase 1%2C reversibly glycosylated polypeptide-1;Note=Reversibly glycosylated polypeptide.;Transcript_evidence=AK061813 (DDBJ%2C Best hit),AK098933 (DDBJ%2C Best hit);ORF_evidence=Q9FUN9 (UniProt);NIAS_FLcDNA=001-040-B03,J013029G13;Oryzabase=8826;TENOR=Os03t0599800-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	22383835	22383926	.	-	.	Parent=Os03t0599800-01
Chr03	irgsp1_rep	CDS	22383493	22383834	.	-	0	Parent=Os03t0599800-01
Chr03	irgsp1_rep	CDS	22382405	22382655	.	-	0	Parent=Os03t0599800-01
Chr03	irgsp1_rep	CDS	22382143	22382311	.	-	1	Parent=Os03t0599800-01
Chr03	irgsp1_rep	CDS	22381683	22382015	.	-	0	Parent=Os03t0599800-01
Chr03	irgsp1_rep	three_prime_UTR	22381361	22381682	.	-	.	Parent=Os03t0599800-01
Chr03	irgsp1_rep	mRNA	22413613	22413988	.	-	.	ID=Os03t0600400-01;Name=Os03t0600400-01;Locus_id=Os03g0600400;Note=Conserved hypothetical protein.;Transcript_evidence=AK059328 (DDBJ%2C Best hit);ORF_evidence=Q8H8T4 (UniProt);NIAS_FLcDNA=001-026-A04;TENOR=Os03t0600400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	22413983	22413988	.	-	.	Parent=Os03t0600400-01
Chr03	irgsp1_rep	CDS	22413818	22413982	.	-	0	Parent=Os03t0600400-01
Chr03	irgsp1_rep	three_prime_UTR	22413613	22413817	.	-	.	Parent=Os03t0600400-01
Chr03	irgsp1_rep	mRNA	22424061	22425033	.	-	.	ID=Os03t0600600-00;Name=Os03t0600600-00;Locus_id=Os03g0600600;Oryzabase Gene Name Synonym(s)=PR2/Beta-1%2C 3-glucanase;Note=Similar to Beta-1%2C3-glucanase.;Transcript_evidence=DQ244526 (DDBJ);ORF_evidence=Q9XEN5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);Oryzabase=19077;TENOR=Os03t0600600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	22424320	22425033	.	-	0	Parent=Os03t0600600-00
Chr03	irgsp1_rep	three_prime_UTR	22424061	22424319	.	-	.	Parent=Os03t0600600-00
Chr03	irgsp1_rep	mRNA	22434429	22436110	.	-	.	ID=Os03t0600800-00;Name=Os03t0600800-00;Locus_id=Os03g0600800;Oryzabase Gene Symbol Synonym(s)=OsFbox154%2C Os_F0130;Oryzabase Gene Name Synonym(s)=F-box protein 154;Note=Similar to F-box domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q84MX7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Protein of unknown function DUF295 (IPR005174),F-box domain%2C Skp2-like (IPR022364);Oryzabase=16943;TENOR=Os03t0600800-00;KEGG=Os03t0600800-00
Chr03	irgsp1_rep	CDS	22434899	22436110	.	-	0	Parent=Os03t0600800-00
Chr03	irgsp1_rep	CDS	22434429	22434515	.	-	0	Parent=Os03t0600800-00
Chr03	irgsp1_rep	mRNA	22443332	22445034	.	+	.	ID=Os03t0601000-01;Name=Os03t0601000-01;Locus_id=Os03g0601000;Note=Conserved hypothetical protein.;Transcript_evidence=AK101571 (DDBJ%2C Best hit);ORF_evidence=Q10H58 (UniProt);NIAS_FLcDNA=J033050I23;TENOR=Os03t0601000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	22443332	22443671	.	+	.	Parent=Os03t0601000-01
Chr03	irgsp1_rep	CDS	22443672	22444760	.	+	0	Parent=Os03t0601000-01
Chr03	irgsp1_rep	three_prime_UTR	22444761	22445034	.	+	.	Parent=Os03t0601000-01
Chr03	irgsp1_rep	mRNA	22451553	22453961	.	-	.	ID=Os03t0601100-01;Name=Os03t0601100-01;Locus_id=Os03g0601100;Note=Protein of unknown function DUF295 domain containing protein.;Transcript_evidence=AK065841 (DDBJ%2C Best hit);ORF_evidence=Q84MX7 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174);NIAS_FLcDNA=J013042E12;Oryzabase=17581;Expression=AK065841;TENOR=Os03t0601100-01;KEGG=Os03t0601100-01
Chr03	irgsp1_rep	five_prime_UTR	22453725	22453961	.	-	.	Parent=Os03t0601100-01
Chr03	irgsp1_rep	CDS	22453602	22453724	.	-	0	Parent=Os03t0601100-01
Chr03	irgsp1_rep	CDS	22451809	22453029	.	-	0	Parent=Os03t0601100-01
Chr03	irgsp1_rep	three_prime_UTR	22451553	22451808	.	-	.	Parent=Os03t0601100-01
Chr03	irgsp1_rep	mRNA	22464518	22469960	.	+	.	ID=Os03t0601500-01;Name=Os03t0601500-01;Locus_id=Os03g0601500;Oryzabase Gene Symbol Synonym(s)=OsEnS-48;Oryzabase Gene Name Synonym(s)=B12D-like protein%2C endosperm-specific gene 48;Note=B12D family protein.;Transcript_evidence=AK242247 (DDBJ%2C Best hit);ORF_evidence=B6T0R2 (UniProt);InterPro=NADH-ubiquinone reductase complex 1 MLRQ subunit (IPR010530);NIAS_FLcDNA=J075181D16;Oryzabase=18119;TENOR=Os03t0601500-01;KEGG=Os03t0601500-01
Chr03	irgsp1_rep	five_prime_UTR	22464518	22464597	.	+	.	Parent=Os03t0601500-01
Chr03	irgsp1_rep	CDS	22464598	22464621	.	+	0	Parent=Os03t0601500-01
Chr03	irgsp1_rep	CDS	22469215	22469303	.	+	0	Parent=Os03t0601500-01
Chr03	irgsp1_rep	CDS	22469668	22469845	.	+	1	Parent=Os03t0601500-01
Chr03	irgsp1_rep	three_prime_UTR	22469846	22469960	.	+	.	Parent=Os03t0601500-01
Chr03	irgsp1_rep	mRNA	22538341	22542412	.	+	.	ID=Os03t0602300-01;Name=Os03t0602300-01;Locus_id=Os03g0602300;RAP-DB Gene Symbol Synonym(s)=OsBRD1%2C OsDWARF;RAP-DB Gene Name Synonym(s)=BR-deficient dwarf1;CGSNL Gene Symbol=BRD1;CGSNL Gene Name=BRASSINOSTEROID-DEFICIENT DWARF 1;Oryzabase Gene Symbol Synonym(s)=brd1%2C OsDWARF%2C DWARF%2C OsBR6ox%2C BR6ox%2C CYP85A1%2C CYP85A4%2C OsDWF%2C CYP85A1/OsDWARF%2C OsBRD1%2C OsCYP85A1;Oryzabase Gene Name Synonym(s)=brassinosteroid-dependent1%2C brassinosteroid-dependent 1%2C brassinosteroid-deficient dwarf1%2C brassinosteroid-deficient dwarf 1%2C CytoChrome P450 85A1%2C C6-oxidase%2C BR-6-oxidase%2C Dwarf protein%2C cytoChrome P450 CYP85A4%2C brassinosteroid deficient1%2C BR-deficient dwarf1%2C BR-deficient dwarf 1;Note=C6-oxidase%2C Brassinosteroid biosynthetic enzyme%2C Brassinosteroid biosynthesis%2C Organization and elongation of the leaf and stem cells%2C Regulation of root growth;Transcript_evidence=AK101670,AK072295;ORF_evidence=Q8GSQ1;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 superfamily (IPR036396),CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J033058D07,J023017E11;Manual Curation=December 27%2C 2019;Literature_PMID=31871071,12445121;Oryzabase=3037;TENOR=Os03t0602300-01
Chr03	irgsp1_rep	five_prime_UTR	22538341	22538560	.	+	.	Parent=Os03t0602300-01
Chr03	irgsp1_rep	CDS	22538561	22538751	.	+	0	Parent=Os03t0602300-01
Chr03	irgsp1_rep	CDS	22539533	22539866	.	+	1	Parent=Os03t0602300-01
Chr03	irgsp1_rep	CDS	22540707	22540856	.	+	0	Parent=Os03t0602300-01
Chr03	irgsp1_rep	CDS	22540950	22541198	.	+	0	Parent=Os03t0602300-01
Chr03	irgsp1_rep	CDS	22541289	22541375	.	+	0	Parent=Os03t0602300-01
Chr03	irgsp1_rep	CDS	22541464	22541542	.	+	0	Parent=Os03t0602300-01
Chr03	irgsp1_rep	CDS	22541636	22541742	.	+	2	Parent=Os03t0602300-01
Chr03	irgsp1_rep	CDS	22541843	22541967	.	+	0	Parent=Os03t0602300-01
Chr03	irgsp1_rep	CDS	22542058	22542145	.	+	1	Parent=Os03t0602300-01
Chr03	irgsp1_rep	three_prime_UTR	22542146	22542412	.	+	.	Parent=Os03t0602300-01
Chr03	irgsp1_rep	mRNA	22539368	22540090	.	-	.	ID=Os03t0602400-01;Name=Os03t0602400-01;Locus_id=Os03g0602400;Note=Non-protein coding transcript.;Transcript_evidence=AK059331 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-026-A07;TENOR=Os03t0602400-01
Chr03	irgsp1_rep	exon	22540053	22540090	.	-	.	Parent=Os03t0602400-01
Chr03	irgsp1_rep	exon	22539368	22539942	.	-	.	Parent=Os03t0602400-01
Chr03	irgsp1_rep	mRNA	22544584	22547295	.	-	.	ID=Os03t0602500-01;Name=Os03t0602500-01;Locus_id=Os03g0602500;Note=Similar to Dihydropterin pyrophosphokinase /dihydropteroate synthase precursor (EC 2.5.1.15).;Transcript_evidence=AK073991 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033075G01;Expression=AK073991;TENOR=Os03t0602500-01;KEGG=Os03t0602500-01 (EC:2.5.1.15)
Chr03	irgsp1_rep	five_prime_UTR	22547048	22547295	.	-	.	Parent=Os03t0602500-01
Chr03	irgsp1_rep	five_prime_UTR	22545363	22545850	.	-	.	Parent=Os03t0602500-01
Chr03	irgsp1_rep	CDS	22545102	22545362	.	-	0	Parent=Os03t0602500-01
Chr03	irgsp1_rep	three_prime_UTR	22544584	22545101	.	-	.	Parent=Os03t0602500-01
Chr03	irgsp1_rep	mRNA	22547535	22552000	.	+	.	ID=Os03t0602600-01;Name=Os03t0602600-01;Locus_id=Os03g0602600;RAP-DB Gene Symbol Synonym(s)=HSA1%2C OsFLN2%2C HSA1/OsFLN2;RAP-DB Gene Name Synonym(s)=heat-stress sensitive albino 1%2C fructokinase-like protein 2;CGSNL Gene Symbol=HSA1;CGSNL Gene Name=HEAT-STRESS SENSITIVE ALBINO 1;Oryzabase Gene Symbol Synonym(s)=OsHSA1%2C OsFLN2%2C FLN2%2C HSA1/OsFLN2;Oryzabase Gene Name Synonym(s)=fructokinase-like 2%2C heat-stress sensitive albino 1;Note=PfkB family fructokinase%2C WLP2 paralog%2C Chloroplast biogenesis and plant growth%2C Protection of chloroplasts under heat stress;Transcript_evidence=AK242650;ORF_evidence=Q6AVL0;InterPro=Ribokinase-like (IPR029056),Carbohydrate kinase PfkB (IPR011611);NIAS_FLcDNA=J090026B07;Manual Curation=October 10%2C 2018;Literature_PMID=29319227,29045742;Oryzabase=22148;TENOR=Os03t0602600-01;KEGG=Os03t0602600-01
Chr03	irgsp1_rep	five_prime_UTR	22547535	22547612	.	+	.	Parent=Os03t0602600-01
Chr03	irgsp1_rep	CDS	22547613	22547686	.	+	0	Parent=Os03t0602600-01
Chr03	irgsp1_rep	CDS	22548182	22548489	.	+	1	Parent=Os03t0602600-01
Chr03	irgsp1_rep	CDS	22548594	22549246	.	+	2	Parent=Os03t0602600-01
Chr03	irgsp1_rep	CDS	22550362	22550833	.	+	0	Parent=Os03t0602600-01
Chr03	irgsp1_rep	CDS	22551467	22551729	.	+	2	Parent=Os03t0602600-01
Chr03	irgsp1_rep	three_prime_UTR	22551730	22552000	.	+	.	Parent=Os03t0602600-01
Chr03	irgsp1_rep	mRNA	22568104	22568742	.	-	.	ID=Os03t0603100-01;Name=Os03t0603100-01;Locus_id=Os03g0603100;RAP-DB Gene Name Synonym(s)=Cyt P450 78A11;CGSNL Gene Symbol=CYP78A11;CGSNL Gene Name=P450 78A11;Oryzabase Gene Symbol Synonym(s)=Cyt P450 78A11%2C OsCYP78A11;Oryzabase Gene Name Synonym(s)=CytoChrome P450 78A11;Note=CytoChrome P450;Transcript_evidence=ab initio prediction;ORF_evidence=A0A0P0W0R0;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 superfamily (IPR036396),CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),Immunoglobulin-like domain (IPR007110),CytoChrome P450%2C conserved site (IPR017972);Manual Curation=June 30%2C 2020;Literature_PMID=32586052;Oryzabase=23738;TENOR=Os03t0603100-00
Chr03	irgsp1_rep	CDS	22568104	22568742	.	-	0	Parent=Os03t0603100-01
Chr03	irgsp1_rep	mRNA	22568192	22573996	.	+	.	ID=Os03t0603200-00;Name=Os03t0603200-00;Locus_id=Os03g0603200;Note=Hypothetical protein.;Transcript_evidence=tplb0044m18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0603200-00
Chr03	irgsp1_rep	five_prime_UTR	22568192	22568431	.	+	.	Parent=Os03t0603200-00
Chr03	irgsp1_rep	CDS	22568432	22568744	.	+	0	Parent=Os03t0603200-00
Chr03	irgsp1_rep	CDS	22573117	22573996	.	+	2	Parent=Os03t0603200-00
Chr03	irgsp1_rep	mRNA	22595988	22603461	.	-	.	ID=Os03t0603300-01;Name=Os03t0603300-01;Locus_id=Os03g0603300;Note=Similar to Bromodomain associated family protein%2C expressed.;Transcript_evidence=AK102310 (DDBJ%2C Best hit);ORF_evidence=Q2QN90 (UniProt);InterPro=Transcription factor TFIID%2C subunit 8%2C C-terminal (IPR019473);NIAS_FLcDNA=J033090C12;Expression=AK102310;TENOR=Os03t0603300-01;KEGG=Os03t0603300-01
Chr03	irgsp1_rep	CDS	22602622	22603461	.	-	0	Parent=Os03t0603300-01
Chr03	irgsp1_rep	three_prime_UTR	22602514	22602621	.	-	.	Parent=Os03t0603300-01
Chr03	irgsp1_rep	three_prime_UTR	22595988	22596669	.	-	.	Parent=Os03t0603300-01
Chr03	irgsp1_rep	mRNA	22612502	22614216	.	+	.	ID=Os03t0603500-00;Name=Os03t0603500-00;Locus_id=Os03g0603500;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0014a17 (Wheat FLcDNA);ORF_evidence=F2EGG5 (UniProt);TENOR=Os03t0603500-00
Chr03	irgsp1_rep	five_prime_UTR	22612502	22612598	.	+	.	Parent=Os03t0603500-00
Chr03	irgsp1_rep	CDS	22612599	22612679	.	+	0	Parent=Os03t0603500-00
Chr03	irgsp1_rep	CDS	22614024	22614101	.	+	0	Parent=Os03t0603500-00
Chr03	irgsp1_rep	three_prime_UTR	22614102	22614216	.	+	.	Parent=Os03t0603500-00
Chr03	irgsp1_rep	mRNA	22616005	22619553	.	+	.	ID=Os03t0603600-01;Name=Os03t0603600-01;Locus_id=Os03g0603600;Note=PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain domain containing protein.;Transcript_evidence=AK071836 (DDBJ%2C Best hit);ORF_evidence=B6TLZ9 (UniProt);GO=Biological Process: glycerol metabolic process (GO:0006071),Biological Process: lipid metabolic process (GO:0006629),Molecular Function: phosphoric diester hydrolase activity (GO:0008081),Molecular Function: glycerophosphodiester phosphodiesterase activity (GO:0008889);InterPro=Glycerophosphoryl diester phosphodiesterase (IPR004129),PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain (IPR017946);NIAS_FLcDNA=J023117P17;Expression=AK071836;TENOR=Os03t0603600-01;KEGG=Os03t0603600-01 (EC:3.1.4.46)
Chr03	irgsp1_rep	five_prime_UTR	22616005	22616098	.	+	.	Parent=Os03t0603600-01
Chr03	irgsp1_rep	CDS	22616099	22616111	.	+	0	Parent=Os03t0603600-01
Chr03	irgsp1_rep	CDS	22616576	22616757	.	+	2	Parent=Os03t0603600-01
Chr03	irgsp1_rep	CDS	22617083	22617266	.	+	0	Parent=Os03t0603600-01
Chr03	irgsp1_rep	CDS	22617359	22617433	.	+	2	Parent=Os03t0603600-01
Chr03	irgsp1_rep	CDS	22617599	22617708	.	+	2	Parent=Os03t0603600-01
Chr03	irgsp1_rep	CDS	22618529	22618747	.	+	0	Parent=Os03t0603600-01
Chr03	irgsp1_rep	CDS	22618831	22618986	.	+	0	Parent=Os03t0603600-01
Chr03	irgsp1_rep	CDS	22619114	22619350	.	+	0	Parent=Os03t0603600-01
Chr03	irgsp1_rep	three_prime_UTR	22619351	22619553	.	+	.	Parent=Os03t0603600-01
Chr03	irgsp1_rep	mRNA	22628794	22630315	.	+	.	ID=Os03t0603800-01;Name=Os03t0603800-01;Locus_id=Os03g0603800;Note=Peptidase A22A%2C presenilin family protein.;Transcript_evidence=AK242161 (DDBJ%2C Best hit);ORF_evidence=B6U914 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A22A%2C presenilin (IPR001108),Peptidase A22%2C presenilin signal peptide (IPR006639);NIAS_FLcDNA=J075156C18;TENOR=Os03t0603800-01;KEGG=Os03t0603800-01
Chr03	irgsp1_rep	five_prime_UTR	22628794	22628850	.	+	.	Parent=Os03t0603800-01
Chr03	irgsp1_rep	CDS	22628851	22630230	.	+	0	Parent=Os03t0603800-01
Chr03	irgsp1_rep	three_prime_UTR	22630231	22630315	.	+	.	Parent=Os03t0603800-01
Chr03	irgsp1_rep	mRNA	22641492	22657252	.	-	.	ID=Os03t0604200-01;Name=Os03t0604200-01;Locus_id=Os03g0604200;Note=Similar to UDP-glucose dehydrogenase.;Transcript_evidence=AK241939 (DDBJ%2C Best hit);ORF_evidence=NP_001151861.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: NAD binding (GO:0051287);InterPro=UDP-glucose/GDP-mannose dehydrogenase%2C N-terminal (IPR001732),6-phosphogluconate dehydrogenase%2C C-terminal-like (IPR008927),UDP-glucose/GDP-mannose dehydrogenase%2C dimerisation (IPR014026),UDP-glucose/GDP-mannose dehydrogenase%2C C-terminal (IPR014027),NAD(P)-binding domain (IPR016040),Nucleotide sugar dehydrogenase (IPR017476),CytoChrome c1%2C transmembrane anchor%2C C-terminal (IPR021157);NIAS_FLcDNA=J075086E13;TENOR=Os03t0604200-01;KEGG=Os03t0604200-01 (EC:1.1.1.22)
Chr03	irgsp1_rep	five_prime_UTR	22656999	22657252	.	-	.	Parent=Os03t0604200-01
Chr03	irgsp1_rep	five_prime_UTR	22643094	22643167	.	-	.	Parent=Os03t0604200-01
Chr03	irgsp1_rep	CDS	22641645	22643093	.	-	0	Parent=Os03t0604200-01
Chr03	irgsp1_rep	three_prime_UTR	22641492	22641644	.	-	.	Parent=Os03t0604200-01
Chr03	irgsp1_rep	mRNA	22649947	22650699	.	-	.	ID=Os03t0604401-00;Name=Os03t0604401-00;Locus_id=Os03g0604401;Note=Similar to CBL-interacting protein kinase 14.;Transcript_evidence=BT064328 (DDBJ);ORF_evidence=C4P7S4 (UniProt);GO=Biological Process: signal transduction (GO:0007165);InterPro=NAF domain (IPR004041),NAF/FISL domain (IPR018451);TENOR=Os03t0604401-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	22650546	22650699	.	-	.	Parent=Os03t0604401-00
Chr03	irgsp1_rep	CDS	22650216	22650545	.	-	0	Parent=Os03t0604401-00
Chr03	irgsp1_rep	three_prime_UTR	22649947	22650215	.	-	.	Parent=Os03t0604401-00
Chr03	irgsp1_rep	mRNA	22641490	22657252	.	+	.	ID=Os03t0604432-01;Name=Os03t0604432-01;Locus_id=Os03g0604432;Note=Hypothetical gene.;Transcript_evidence=AK242088 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J075140M08;TENOR=Os03t0604432-01;KEGG=Os03t0604432-01
Chr03	irgsp1_rep	five_prime_UTR	22641490	22642506	.	+	.	Parent=Os03t0604432-01
Chr03	irgsp1_rep	CDS	22642507	22642782	.	+	0	Parent=Os03t0604432-01
Chr03	irgsp1_rep	three_prime_UTR	22642783	22643167	.	+	.	Parent=Os03t0604432-01
Chr03	irgsp1_rep	three_prime_UTR	22656999	22657252	.	+	.	Parent=Os03t0604432-01
Chr03	irgsp1_rep	mRNA	22659157	22664290	.	+	.	ID=Os03t0604500-01;Name=Os03t0604500-01;Locus_id=Os03g0604500;Note=Hypothetical gene.;Transcript_evidence=AK288603 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090052J05;TENOR=Os03t0604500-01;KEGG=Os03t0604500-01
Chr03	irgsp1_rep	five_prime_UTR	22659157	22661392	.	+	.	Parent=Os03t0604500-01
Chr03	irgsp1_rep	CDS	22661393	22662013	.	+	0	Parent=Os03t0604500-01
Chr03	irgsp1_rep	three_prime_UTR	22662014	22664290	.	+	.	Parent=Os03t0604500-01
Chr03	irgsp1_rep	mRNA	22667960	22669203	.	+	.	ID=Os03t0604566-01;Name=Os03t0604566-01;Locus_id=Os03g0604566;Note=Conserved hypothetical protein.;Transcript_evidence=AK243233 (DDBJ%2C Best hit);ORF_evidence=NP_001173530.1 (RefSeq);NIAS_FLcDNA=J100045D18;TENOR=Os03t0604566-01;KEGG=Os03t0604566-01
Chr03	irgsp1_rep	five_prime_UTR	22667960	22668247	.	+	.	Parent=Os03t0604566-01
Chr03	irgsp1_rep	CDS	22668248	22668403	.	+	0	Parent=Os03t0604566-01
Chr03	irgsp1_rep	CDS	22668534	22669037	.	+	0	Parent=Os03t0604566-01
Chr03	irgsp1_rep	three_prime_UTR	22669038	22669203	.	+	.	Parent=Os03t0604566-01
Chr03	irgsp1_rep	mRNA	22672067	22675791	.	-	.	ID=Os03t0604600-01;Name=Os03t0604600-01;Locus_id=Os03g0604600;Note=Hypothetical conserved gene.;Transcript_evidence=AK242979 (DDBJ%2C Best hit);ORF_evidence=Q6AUY1 (UniProt);NIAS_FLcDNA=J090093K23;TENOR=Os03t0604600-01
Chr03	irgsp1_rep	five_prime_UTR	22675679	22675791	.	-	.	Parent=Os03t0604600-01
Chr03	irgsp1_rep	CDS	22675538	22675678	.	-	0	Parent=Os03t0604600-01
Chr03	irgsp1_rep	CDS	22673881	22674042	.	-	0	Parent=Os03t0604600-01
Chr03	irgsp1_rep	CDS	22673486	22673658	.	-	0	Parent=Os03t0604600-01
Chr03	irgsp1_rep	CDS	22672067	22673388	.	-	1	Parent=Os03t0604600-01
Chr03	irgsp1_rep	mRNA	22671444	22674021	.	+	.	ID=Os03t0604700-01;Name=Os03t0604700-01;Locus_id=Os03g0604700;Note=Hypothetical protein.;Transcript_evidence=AK064243 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-105-B08;Expression=AK064243;TENOR=Os03t0604700-01;KEGG=Os03t0604700-01
Chr03	irgsp1_rep	five_prime_UTR	22671444	22672131	.	+	.	Parent=Os03t0604700-01
Chr03	irgsp1_rep	five_prime_UTR	22672818	22673493	.	+	.	Parent=Os03t0604700-01
Chr03	irgsp1_rep	CDS	22673494	22673760	.	+	0	Parent=Os03t0604700-01
Chr03	irgsp1_rep	three_prime_UTR	22673761	22674021	.	+	.	Parent=Os03t0604700-01
Chr03	irgsp1_rep	mRNA	22697488	22697548	.	+	.	ID=Os03t0604950-00;Name=Os03t0604950-00;Locus_id=Os03g0604950;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0604950-00
Chr03	irgsp1_rep	exon	22697488	22697548	.	+	.	Parent=Os03t0604950-00
Chr03	irgsp1_rep	mRNA	22703015	22705531	.	+	.	ID=Os03t0605300-01;Name=Os03t0605300-01;Locus_id=Os03g0605300;Oryzabase Gene Symbol Synonym(s)=OsSub30%2C SUB30;Oryzabase Gene Name Synonym(s)=subtilisin-like proteinase%2C Subtilisin 30%2C SUBTILISIN 30;Note=Similar to Subtilisin-like protease (Fragment).;Transcript_evidence=AK105749 (DDBJ%2C Best hit);ORF_evidence=NP_001151549.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);NIAS_FLcDNA=001-202-B09;Oryzabase=19107;Expression=AK105749;TENOR=Os03t0605300-01;KEGG=Os03t0605300-01
Chr03	irgsp1_rep	five_prime_UTR	22703015	22703060	.	+	.	Parent=Os03t0605300-01
Chr03	irgsp1_rep	CDS	22703061	22705358	.	+	0	Parent=Os03t0605300-01
Chr03	irgsp1_rep	three_prime_UTR	22705359	22705531	.	+	.	Parent=Os03t0605300-01
Chr03	irgsp1_rep	mRNA	22715554	22718500	.	-	.	ID=Os03t0605400-01;Name=Os03t0605400-01;Locus_id=Os03g0605400;Note=Non-protein coding transcript.;Transcript_evidence=AK063612 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-118-D05;TENOR=Os03t0605400-01
Chr03	irgsp1_rep	exon	22718356	22718500	.	-	.	Parent=Os03t0605400-01
Chr03	irgsp1_rep	exon	22718170	22718301	.	-	.	Parent=Os03t0605400-01
Chr03	irgsp1_rep	exon	22717104	22717149	.	-	.	Parent=Os03t0605400-01
Chr03	irgsp1_rep	exon	22715554	22716371	.	-	.	Parent=Os03t0605400-01
Chr03	irgsp1_rep	mRNA	22744360	22746914	.	-	.	ID=Os03t0606100-01;Name=Os03t0606100-01;Locus_id=Os03g0606100;Note=Similar to predicted protein.;Transcript_evidence=AK288247 (DDBJ%2C Best hit);ORF_evidence=Q9SFZ0 (UniProt);InterPro=Protein of unknown function DUF620 (IPR006873);NIAS_FLcDNA=J090014G20;TENOR=Os03t0606100-01;KEGG=Os03t0606100-01
Chr03	irgsp1_rep	five_prime_UTR	22746910	22746914	.	-	.	Parent=Os03t0606100-01
Chr03	irgsp1_rep	CDS	22746565	22746909	.	-	0	Parent=Os03t0606100-01
Chr03	irgsp1_rep	CDS	22745781	22746128	.	-	0	Parent=Os03t0606100-01
Chr03	irgsp1_rep	CDS	22745043	22745672	.	-	0	Parent=Os03t0606100-01
Chr03	irgsp1_rep	three_prime_UTR	22744360	22745042	.	-	.	Parent=Os03t0606100-01
Chr03	irgsp1_rep	mRNA	22740588	22741268	.	+	.	ID=Os03t0606200-01;Name=Os03t0606200-01;Locus_id=Os03g0606200;Oryzabase Gene Symbol Synonym(s)=RMtATP6;Oryzabase Gene Name Synonym(s)=mitochondrial ATP synthase 6 kDa subunit;Note=Mitochondrial ATP synthase 6 KD subunit.;Transcript_evidence=AK107928 (DDBJ%2C Best hit),AK072384 (DDBJ%2C Best hit);ORF_evidence=D7RXX9 (UniProt);NIAS_FLcDNA=002-134-H11,J023078E13;Oryzabase=14098;Expression=AK107928;TENOR=Os03t0606200-01;KEGG=Os03t0606200-01
Chr03	irgsp1_rep	five_prime_UTR	22740588	22740692	.	+	.	Parent=Os03t0606200-01
Chr03	irgsp1_rep	CDS	22740693	22740869	.	+	0	Parent=Os03t0606200-01
Chr03	irgsp1_rep	three_prime_UTR	22740870	22741268	.	+	.	Parent=Os03t0606200-01
Chr03	irgsp1_rep	mRNA	22745389	22746775	.	+	.	ID=Os03t0606333-00;Name=Os03t0606333-00;Locus_id=Os03g0606333;Note=Hypothetical gene.;Transcript_evidence=BT085554 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0606333-00;KEGG=Os03t0606333-00
Chr03	irgsp1_rep	five_prime_UTR	22745389	22745471	.	+	.	Parent=Os03t0606333-00
Chr03	irgsp1_rep	CDS	22745472	22745655	.	+	0	Parent=Os03t0606333-00
Chr03	irgsp1_rep	CDS	22745767	22746134	.	+	2	Parent=Os03t0606333-00
Chr03	irgsp1_rep	three_prime_UTR	22746135	22746775	.	+	.	Parent=Os03t0606333-00
Chr03	irgsp1_rep	mRNA	22757555	22759817	.	-	.	ID=Os03t0606466-01;Name=Os03t0606466-01;Locus_id=Os03g0606466;Note=Conserved hypothetical protein.;Transcript_evidence=AK289268 (DDBJ%2C Best hit);ORF_evidence=Q6EUE2 (UniProt);NIAS_FLcDNA=J100090H24;TENOR=Os03t0606466-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	22757986	22759817	.	-	.	Parent=Os03t0606466-01
Chr03	irgsp1_rep	CDS	22757638	22757985	.	-	0	Parent=Os03t0606466-01
Chr03	irgsp1_rep	three_prime_UTR	22757555	22757637	.	-	.	Parent=Os03t0606466-01
Chr03	irgsp1_rep	mRNA	22799861	22803963	.	-	.	ID=Os03t0606600-00;Name=Os03t0606600-00;Locus_id=Os03g0606600;Note=Hypothetical conserved gene.;Transcript_evidence=BT066114 (DDBJ);ORF_evidence=Q2QN30 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Natural resistance-associated macrophage protein (IPR001046);TENOR=Os03t0606600-00;KEGG=Os03t0606600-00
Chr03	irgsp1_rep	five_prime_UTR	22803777	22803963	.	-	.	Parent=Os03t0606600-00
Chr03	irgsp1_rep	CDS	22803529	22803776	.	-	0	Parent=Os03t0606600-00
Chr03	irgsp1_rep	CDS	22801850	22801986	.	-	1	Parent=Os03t0606600-00
Chr03	irgsp1_rep	CDS	22801494	22801765	.	-	2	Parent=Os03t0606600-00
Chr03	irgsp1_rep	three_prime_UTR	22801468	22801493	.	-	.	Parent=Os03t0606600-00
Chr03	irgsp1_rep	three_prime_UTR	22800496	22800848	.	-	.	Parent=Os03t0606600-00
Chr03	irgsp1_rep	three_prime_UTR	22799861	22800028	.	-	.	Parent=Os03t0606600-00
Chr03	irgsp1_rep	mRNA	22816016	22816492	.	-	.	ID=Os03t0607100-00;Name=Os03t0607100-00;Locus_id=Os03g0607100;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001173532.1 (RefSeq);TENOR=Os03t0607100-00;KEGG=Os03t0607100-00
Chr03	irgsp1_rep	CDS	22816016	22816492	.	-	0	Parent=Os03t0607100-00
Chr03	irgsp1_rep	mRNA	22816933	22817774	.	-	.	ID=Os03t0607200-01;Name=Os03t0607200-01;Locus_id=Os03g0607200;Note=Gibberellin regulated protein family protein.;Transcript_evidence=AK070268 (DDBJ%2C Best hit);ORF_evidence=C8C4P9 (UniProt);InterPro=Gibberellin regulated protein (IPR003854);NIAS_FLcDNA=J023044E14;Expression=AK070268;TENOR=Os03t0607200-01;KEGG=Os03t0607200-01
Chr03	irgsp1_rep	five_prime_UTR	22817650	22817774	.	-	.	Parent=Os03t0607200-01
Chr03	irgsp1_rep	CDS	22817559	22817649	.	-	0	Parent=Os03t0607200-01
Chr03	irgsp1_rep	CDS	22817295	22817488	.	-	2	Parent=Os03t0607200-01
Chr03	irgsp1_rep	three_prime_UTR	22816933	22817294	.	-	.	Parent=Os03t0607200-01
Chr03	irgsp1_rep	mRNA	22822747	22826585	.	-	.	ID=Os03t0607400-01;Name=Os03t0607400-01;Locus_id=Os03g0607400;Note=Similar to Metal transporter Nramp6.;Transcript_evidence=AK069904 (DDBJ%2C Best hit);ORF_evidence=Q2QN30 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Natural resistance-associated macrophage protein (IPR001046);NIAS_FLcDNA=J023034I18;TENOR=Os03t0607400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	22826542	22826585	.	-	.	Parent=Os03t0607400-01
Chr03	irgsp1_rep	CDS	22825901	22826541	.	-	0	Parent=Os03t0607400-01
Chr03	irgsp1_rep	CDS	22825228	22825237	.	-	1	Parent=Os03t0607400-01
Chr03	irgsp1_rep	three_prime_UTR	22824816	22825227	.	-	.	Parent=Os03t0607400-01
Chr03	irgsp1_rep	three_prime_UTR	22824566	22824722	.	-	.	Parent=Os03t0607400-01
Chr03	irgsp1_rep	three_prime_UTR	22824070	22824497	.	-	.	Parent=Os03t0607400-01
Chr03	irgsp1_rep	three_prime_UTR	22822747	22823458	.	-	.	Parent=Os03t0607400-01
Chr03	irgsp1_rep	mRNA	22830703	22832836	.	+	.	ID=Os03t0607500-01;Name=Os03t0607500-01;Locus_id=Os03g0607500;Note=Similar to Seed maturation protein PM23 (Fragment).;Transcript_evidence=AK059397 (DDBJ%2C Best hit);ORF_evidence=Q9SEL1 (UniProt);NIAS_FLcDNA=001-027-A10;Expression=AK059397;TENOR=Os03t0607500-01;KEGG=Os03t0607500-01
Chr03	irgsp1_rep	CDS	22830703	22830777	.	+	0	Parent=Os03t0607500-01
Chr03	irgsp1_rep	CDS	22831825	22831932	.	+	0	Parent=Os03t0607500-01
Chr03	irgsp1_rep	CDS	22832090	22832340	.	+	0	Parent=Os03t0607500-01
Chr03	irgsp1_rep	CDS	22832434	22832551	.	+	1	Parent=Os03t0607500-01
Chr03	irgsp1_rep	three_prime_UTR	22832552	22832836	.	+	.	Parent=Os03t0607500-01
Chr03	irgsp1_rep	mRNA	22844926	22847390	.	+	.	ID=Os03t0607600-00;Name=Os03t0607600-00;Locus_id=Os03g0607600;CGSNL Gene Symbol=CYCA3%3B1;CGSNL Gene Name=CYCLIN-A3-1;Oryzabase Gene Symbol Synonym(s)=CycA3%3B1%2C CycA3%3Bos%3B1%2C Orysa%3BCycA3%3B1%2C CYCA2.2;Oryzabase Gene Name Synonym(s)=A-type cyclin 3%3B1;Note=Similar to Cyclin-A3-1.;Transcript_evidence=EU953214 (DDBJ);ORF_evidence=Q75I54 (UniProt);GO=Cellular Component: nucleus (GO:0005634);InterPro=Cyclin%2C C-terminal (IPR004367),Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763);Oryzabase=13256;TENOR=Os03t0607600-00;KEGG=Os03t0607600-00
Chr03	irgsp1_rep	CDS	22844926	22846208	.	+	0	Parent=Os03t0607600-00
Chr03	irgsp1_rep	CDS	22846302	22846377	.	+	1	Parent=Os03t0607600-00
Chr03	irgsp1_rep	CDS	22846501	22846577	.	+	0	Parent=Os03t0607600-00
Chr03	irgsp1_rep	CDS	22846677	22846710	.	+	1	Parent=Os03t0607600-00
Chr03	irgsp1_rep	CDS	22846817	22846966	.	+	0	Parent=Os03t0607600-00
Chr03	irgsp1_rep	CDS	22847053	22847187	.	+	0	Parent=Os03t0607600-00
Chr03	irgsp1_rep	CDS	22847274	22847345	.	+	0	Parent=Os03t0607600-00
Chr03	irgsp1_rep	three_prime_UTR	22847346	22847390	.	+	.	Parent=Os03t0607600-00
Chr03	irgsp1_rep	mRNA	22850942	22852108	.	-	.	ID=Os03t0607700-01;Name=Os03t0607700-01;Locus_id=Os03g0607700;Note=Zinc finger%2C C2H2-like domain containing protein.;Transcript_evidence=AK059013 (DDBJ%2C Best hit);ORF_evidence=B9F9N0 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=001-021-A06;Expression=AK059013;TENOR=Os03t0607700-01;KEGG=Os03t0607700-01
Chr03	irgsp1_rep	five_prime_UTR	22851862	22852108	.	-	.	Parent=Os03t0607700-01
Chr03	irgsp1_rep	CDS	22851124	22851861	.	-	0	Parent=Os03t0607700-01
Chr03	irgsp1_rep	three_prime_UTR	22850942	22851123	.	-	.	Parent=Os03t0607700-01
Chr03	irgsp1_rep	mRNA	22856728	22861392	.	-	.	ID=Os03t0607800-01;Name=Os03t0607800-01;Locus_id=Os03g0607800;Note=Conserved hypothetical protein.;Transcript_evidence=AK102418 (DDBJ%2C Best hit);ORF_evidence=Q75HK8 (UniProt);NIAS_FLcDNA=J033093C21;Expression=AK102418;TENOR=Os03t0607800-01;KEGG=Os03t0607800-01
Chr03	irgsp1_rep	five_prime_UTR	22861240	22861392	.	-	.	Parent=Os03t0607800-01
Chr03	irgsp1_rep	CDS	22861059	22861239	.	-	0	Parent=Os03t0607800-01
Chr03	irgsp1_rep	CDS	22857558	22857694	.	-	2	Parent=Os03t0607800-01
Chr03	irgsp1_rep	CDS	22857255	22857470	.	-	0	Parent=Os03t0607800-01
Chr03	irgsp1_rep	three_prime_UTR	22856728	22857254	.	-	.	Parent=Os03t0607800-01
Chr03	irgsp1_rep	mRNA	22863494	22864070	.	-	.	ID=Os03t0608000-01;Name=Os03t0608000-01;Locus_id=Os03g0608000;Note=Hypothetical protein.;Transcript_evidence=AK111073 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=002-175-E08;Expression=AK111073;TENOR=Os03t0608000-01;KEGG=Os03t0608000-01
Chr03	irgsp1_rep	five_prime_UTR	22863983	22864070	.	-	.	Parent=Os03t0608000-01
Chr03	irgsp1_rep	CDS	22863710	22863982	.	-	0	Parent=Os03t0608000-01
Chr03	irgsp1_rep	three_prime_UTR	22863494	22863709	.	-	.	Parent=Os03t0608000-01
Chr03	irgsp1_rep	mRNA	22874664	22876929	.	-	.	ID=Os03t0608200-01;Name=Os03t0608200-01;Locus_id=Os03g0608200;Note=Non-protein coding transcript.;Transcript_evidence=AK242100 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J075143L22;TENOR=Os03t0608200-01
Chr03	irgsp1_rep	exon	22874664	22876929	.	-	.	Parent=Os03t0608200-01
Chr03	irgsp1_rep	mRNA	22892426	22895558	.	-	.	ID=Os03t0608600-01;Name=Os03t0608600-01;Locus_id=Os03g0608600;Oryzabase Gene Symbol Synonym(s)=OsDeg-like 5;Oryzabase Gene Name Synonym(s)=Deg protease-like 5;Note=Peptidase%2C trypsin-like serine and cysteine domain containing protein.;Transcript_evidence=AK072602 (DDBJ%2C Best hit);ORF_evidence=A2XJF9 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Peptidase cysteine/serine%2C trypsin-like (IPR009003);NIAS_FLcDNA=J023125L05;Oryzabase=20965;Expression=AK072602;TENOR=Os03t0608600-01;KEGG=Os03t0608600-01
Chr03	irgsp1_rep	five_prime_UTR	22895199	22895558	.	-	.	Parent=Os03t0608600-01
Chr03	irgsp1_rep	five_prime_UTR	22894071	22894073	.	-	.	Parent=Os03t0608600-01
Chr03	irgsp1_rep	CDS	22893255	22894070	.	-	0	Parent=Os03t0608600-01
Chr03	irgsp1_rep	three_prime_UTR	22893253	22893254	.	-	.	Parent=Os03t0608600-01
Chr03	irgsp1_rep	three_prime_UTR	22892426	22892766	.	-	.	Parent=Os03t0608600-01
Chr03	irgsp1_rep	mRNA	22911337	22918539	.	-	.	ID=Os03t0608700-01;Name=Os03t0608700-01;Locus_id=Os03g0608700;Note=Similar to 10A19I.15.;Transcript_evidence=AK063928 (DDBJ%2C Best hit),AK099347 (DDBJ%2C Best hit);ORF_evidence=Q9XHV1 (UniProt);InterPro=Myb/SANT-like domain (IPR024752);NIAS_FLcDNA=001-123-C09,J033024P11;TENOR=Os03t0608700-01
Chr03	irgsp1_rep	five_prime_UTR	22918396	22918539	.	-	.	Parent=Os03t0608700-01
Chr03	irgsp1_rep	five_prime_UTR	22914214	22914271	.	-	.	Parent=Os03t0608700-01
Chr03	irgsp1_rep	five_prime_UTR	22912420	22912426	.	-	.	Parent=Os03t0608700-01
Chr03	irgsp1_rep	CDS	22912096	22912419	.	-	0	Parent=Os03t0608700-01
Chr03	irgsp1_rep	CDS	22911508	22912017	.	-	0	Parent=Os03t0608700-01
Chr03	irgsp1_rep	three_prime_UTR	22911337	22911507	.	-	.	Parent=Os03t0608700-01
Chr03	irgsp1_rep	mRNA	22912599	22918503	.	-	.	ID=Os03t0608700-02;Name=Os03t0608700-02;Locus_id=Os03g0608700;Note=Putative harbinger transposase-derived nuclease domain containing protein.;Transcript_evidence=AK066005 (DDBJ%2C Best hit);ORF_evidence=longestORF;GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Putative harbinger transposase-derived nuclease (IPR006912);NIAS_FLcDNA=J013045L13;TENOR=Os03t0608700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	22918396	22918503	.	-	.	Parent=Os03t0608700-02
Chr03	irgsp1_rep	five_prime_UTR	22914214	22914414	.	-	.	Parent=Os03t0608700-02
Chr03	irgsp1_rep	five_prime_UTR	22913611	22914117	.	-	.	Parent=Os03t0608700-02
Chr03	irgsp1_rep	five_prime_UTR	22913466	22913519	.	-	.	Parent=Os03t0608700-02
Chr03	irgsp1_rep	CDS	22913294	22913465	.	-	0	Parent=Os03t0608700-02
Chr03	irgsp1_rep	CDS	22912764	22913209	.	-	2	Parent=Os03t0608700-02
Chr03	irgsp1_rep	three_prime_UTR	22912599	22912763	.	-	.	Parent=Os03t0608700-02
Chr03	irgsp1_rep	mRNA	22930319	22937157	.	+	.	ID=Os03t0608800-01;Name=Os03t0608800-01;Locus_id=Os03g0608800;Note=PDZ/DHR/GLGF domain containing protein.;Transcript_evidence=AK071245 (DDBJ%2C Best hit);ORF_evidence=B8AM75 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein binding (GO:0005515);InterPro=PDZ/DHR/GLGF (IPR001478),Peptidase cysteine/serine%2C trypsin-like (IPR009003);NIAS_FLcDNA=J023086B22;Expression=AK071245;TENOR=Os03t0608800-01;KEGG=Os03t0608800-01
Chr03	irgsp1_rep	five_prime_UTR	22930319	22930497	.	+	.	Parent=Os03t0608800-01
Chr03	irgsp1_rep	CDS	22930498	22930627	.	+	0	Parent=Os03t0608800-01
Chr03	irgsp1_rep	CDS	22930737	22930847	.	+	2	Parent=Os03t0608800-01
Chr03	irgsp1_rep	CDS	22931259	22931386	.	+	2	Parent=Os03t0608800-01
Chr03	irgsp1_rep	CDS	22931459	22931742	.	+	0	Parent=Os03t0608800-01
Chr03	irgsp1_rep	CDS	22932417	22932486	.	+	1	Parent=Os03t0608800-01
Chr03	irgsp1_rep	CDS	22932572	22932702	.	+	0	Parent=Os03t0608800-01
Chr03	irgsp1_rep	CDS	22936070	22936190	.	+	1	Parent=Os03t0608800-01
Chr03	irgsp1_rep	CDS	22936280	22936366	.	+	0	Parent=Os03t0608800-01
Chr03	irgsp1_rep	CDS	22936532	22936656	.	+	0	Parent=Os03t0608800-01
Chr03	irgsp1_rep	CDS	22936743	22936767	.	+	1	Parent=Os03t0608800-01
Chr03	irgsp1_rep	three_prime_UTR	22936768	22937157	.	+	.	Parent=Os03t0608800-01
Chr03	irgsp1_rep	mRNA	22947541	22950581	.	+	.	ID=Os03t0609000-01;Name=Os03t0609000-01;Locus_id=Os03g0609000;Note=Peptidase%2C trypsin-like serine and cysteine domain containing protein.;Transcript_evidence=AK101140 (DDBJ%2C Best hit);ORF_evidence=Q75HM0 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Peptidase cysteine/serine%2C trypsin-like (IPR009003);NIAS_FLcDNA=J033026L10;Expression=AK101140;TENOR=Os03t0609000-01;KEGG=Os03t0609000-01
Chr03	irgsp1_rep	five_prime_UTR	22947541	22947826	.	+	.	Parent=Os03t0609000-01
Chr03	irgsp1_rep	five_prime_UTR	22947953	22948096	.	+	.	Parent=Os03t0609000-01
Chr03	irgsp1_rep	five_prime_UTR	22948184	22949220	.	+	.	Parent=Os03t0609000-01
Chr03	irgsp1_rep	CDS	22949221	22950063	.	+	0	Parent=Os03t0609000-01
Chr03	irgsp1_rep	three_prime_UTR	22950064	22950581	.	+	.	Parent=Os03t0609000-01
Chr03	irgsp1_rep	mRNA	22961583	22967221	.	+	.	ID=Os03t0609200-00;Name=Os03t0609200-00;Locus_id=Os03g0609200;Note=Similar to DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide.;Transcript_evidence=EU955963 (DDBJ);ORF_evidence=NP_001147612.1 (RefSeq);InterPro=RNA polymerase III%2C subunit Rpc25 (IPR013238),Nucleic acid-binding%2C OB-fold-like (IPR016027);TENOR=Os03t0609200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	22961583	22961587	.	+	.	Parent=Os03t0609200-00
Chr03	irgsp1_rep	CDS	22961588	22961675	.	+	0	Parent=Os03t0609200-00
Chr03	irgsp1_rep	CDS	22962620	22962683	.	+	2	Parent=Os03t0609200-00
Chr03	irgsp1_rep	CDS	22966770	22966936	.	+	1	Parent=Os03t0609200-00
Chr03	irgsp1_rep	CDS	22967077	22967087	.	+	2	Parent=Os03t0609200-00
Chr03	irgsp1_rep	three_prime_UTR	22967088	22967221	.	+	.	Parent=Os03t0609200-00
Chr03	irgsp1_rep	mRNA	22971541	22972365	.	+	.	ID=Os03t0609400-01;Name=Os03t0609400-01;Locus_id=Os03g0609400;Note=Non-protein coding transcript.;Transcript_evidence=AK241806 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065209N18;TENOR=Os03t0609400-01
Chr03	irgsp1_rep	exon	22971541	22972365	.	+	.	Parent=Os03t0609400-01
Chr03	irgsp1_rep	mRNA	22976955	22979863	.	-	.	ID=Os03t0609500-01;Name=Os03t0609500-01;Locus_id=Os03g0609500;RAP-DB Gene Symbol Synonym(s)=OsLBD38;RAP-DB Gene Name Synonym(s)=LATERAL ORGAN BOUNDARIES DOMAIN 38;Oryzabase Gene Symbol Synonym(s)=OsLBD38%2C LBD38;Oryzabase Gene Name Synonym(s)=LATERAL ORGAN BOUNDARIES DOMAIN 38%2C lateral organ boundaries domain protein 38;Note=LATERAL ORGAN BOUNDARIES DOMAIN (LBD) protein%2C Transcriptional activator%2C Regulation of heading date and yield;Transcript_evidence=AK288002;ORF_evidence=Q75HN5;InterPro=Lateral organ boundaries%2C LOB (IPR004883);NIAS_FLcDNA=J075110B01;Manual Curation=October 26%2C 2017;Literature_PMID=28342864;Oryzabase=21733;TENOR=Os03t0609500-01;KEGG=Os03t0609500-01;Subcellular location=nucleus (GO:0005634)
Chr03	irgsp1_rep	five_prime_UTR	22979696	22979863	.	-	.	Parent=Os03t0609500-01
Chr03	irgsp1_rep	CDS	22979512	22979695	.	-	0	Parent=Os03t0609500-01
Chr03	irgsp1_rep	CDS	22977192	22977706	.	-	2	Parent=Os03t0609500-01
Chr03	irgsp1_rep	three_prime_UTR	22976955	22977191	.	-	.	Parent=Os03t0609500-01
Chr03	irgsp1_rep	mRNA	22990172	22996441	.	-	.	ID=Os03t0609800-01;Name=Os03t0609800-01;Locus_id=Os03g0609800;Note=BTB domain containing protein.;Transcript_evidence=AK065981 (DDBJ%2C Best hit);ORF_evidence=D9ZIQ8 (UniProt);GO=Biological Process: response to light stimulus (GO:0009416),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),NPH3 (IPR004249),BTB/POZ fold (IPR011333);NIAS_FLcDNA=J013046P19;Expression=AK065981;TENOR=Os03t0609800-01;KEGG=Os03t0609800-01
Chr03	irgsp1_rep	five_prime_UTR	22996357	22996441	.	-	.	Parent=Os03t0609800-01
Chr03	irgsp1_rep	five_prime_UTR	22995099	22995529	.	-	.	Parent=Os03t0609800-01
Chr03	irgsp1_rep	CDS	22995037	22995098	.	-	0	Parent=Os03t0609800-01
Chr03	irgsp1_rep	CDS	22992954	22993023	.	-	1	Parent=Os03t0609800-01
Chr03	irgsp1_rep	CDS	22991131	22992315	.	-	0	Parent=Os03t0609800-01
Chr03	irgsp1_rep	CDS	22990457	22991044	.	-	0	Parent=Os03t0609800-01
Chr03	irgsp1_rep	three_prime_UTR	22990172	22990456	.	-	.	Parent=Os03t0609800-01
Chr03	irgsp1_rep	mRNA	22990183	22996307	.	-	.	ID=Os03t0609800-02;Name=Os03t0609800-02;Locus_id=Os03g0609800;Note=BTB domain containing protein.;Transcript_evidence=AK065225 (DDBJ%2C Best hit);ORF_evidence=D9ZIQ8 (UniProt);GO=Biological Process: response to light stimulus (GO:0009416),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),NPH3 (IPR004249),BTB/POZ fold (IPR011333);NIAS_FLcDNA=J013002G24;Expression=AK065225;TENOR=Os03t0609800-02;KEGG=Os03t0609800-02
Chr03	irgsp1_rep	five_prime_UTR	22995099	22996307	.	-	.	Parent=Os03t0609800-02
Chr03	irgsp1_rep	CDS	22995037	22995098	.	-	0	Parent=Os03t0609800-02
Chr03	irgsp1_rep	CDS	22992954	22993023	.	-	1	Parent=Os03t0609800-02
Chr03	irgsp1_rep	CDS	22991131	22992315	.	-	0	Parent=Os03t0609800-02
Chr03	irgsp1_rep	CDS	22990457	22991044	.	-	0	Parent=Os03t0609800-02
Chr03	irgsp1_rep	three_prime_UTR	22990183	22990456	.	-	.	Parent=Os03t0609800-02
Chr03	irgsp1_rep	mRNA	23036335	23037381	.	-	.	ID=Os03t0610400-01;Name=Os03t0610400-01;Locus_id=Os03g0610400;Note=Zinc finger%2C C2H2-like domain containing protein.;Transcript_evidence=AK287943 (DDBJ%2C Best hit);ORF_evidence=A2XJH1 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J075021K20;TENOR=Os03t0610400-01;KEGG=Os03t0610400-01
Chr03	irgsp1_rep	five_prime_UTR	23037248	23037381	.	-	.	Parent=Os03t0610400-01
Chr03	irgsp1_rep	CDS	23036531	23037247	.	-	0	Parent=Os03t0610400-01
Chr03	irgsp1_rep	three_prime_UTR	23036335	23036530	.	-	.	Parent=Os03t0610400-01
Chr03	irgsp1_rep	mRNA	23048126	23050530	.	+	.	ID=Os03t0610650-01;Name=Os03t0610650-01;Locus_id=Os03g0610650;Oryzabase Gene Symbol Synonym(s)=OsSRP-LRS%2C OsSPN%2C OrysaZxa;Oryzabase Gene Name Synonym(s)=OsSerpin%2C Serpin-ZXA;Note=Similar to cDNA clone:002-125-A07%2C full insert sequence.;Transcript_evidence=AK243629 (DDBJ%2C Best hit);ORF_evidence=B7F045 (UniProt);GO=Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Protease inhibitor I4%2C serpin (IPR000215),Protease inhibitor I4%2C serpin%2C plant (IPR015554),Protease inhibitor I4%2C serpin%2C conserved site (IPR023795),Serpin domain (IPR023796);NIAS_FLcDNA=J100087B22;Oryzabase=11577;TENOR=Os03t0610650-01;KEGG=Os03t0610650-01
Chr03	irgsp1_rep	five_prime_UTR	23048126	23048221	.	+	.	Parent=Os03t0610650-01
Chr03	irgsp1_rep	CDS	23048222	23048632	.	+	0	Parent=Os03t0610650-01
Chr03	irgsp1_rep	CDS	23049626	23050405	.	+	0	Parent=Os03t0610650-01
Chr03	irgsp1_rep	three_prime_UTR	23050406	23050530	.	+	.	Parent=Os03t0610650-01
Chr03	irgsp1_rep	mRNA	23052712	23053499	.	+	.	ID=Os03t0610700-01;Name=Os03t0610700-01;Locus_id=Os03g0610700;Note=Similar to Protein zx.;Transcript_evidence=AK121227 (DDBJ%2C Best hit);ORF_evidence=Q40066 (UniProt);GO=Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Protease inhibitor I4%2C serpin (IPR000215),Protease inhibitor I4%2C serpin%2C plant (IPR015554),Protease inhibitor I4%2C serpin%2C conserved site (IPR023795),Serpin domain (IPR023796);NIAS_FLcDNA=J023091I18;Expression=AK121227;TENOR=Os03t0610700-01;KEGG=Os03t0610700-01
Chr03	irgsp1_rep	five_prime_UTR	23052712	23052712	.	+	.	Parent=Os03t0610700-01
Chr03	irgsp1_rep	CDS	23052713	23053369	.	+	0	Parent=Os03t0610700-01
Chr03	irgsp1_rep	three_prime_UTR	23053370	23053499	.	+	.	Parent=Os03t0610700-01
Chr03	irgsp1_rep	mRNA	23054583	23068159	.	+	.	ID=Os03t0610800-01;Name=Os03t0610800-01;Locus_id=Os03g0610800;Oryzabase Gene Symbol Synonym(s)=OsSRP-FRS%2C OrysaZxb;Oryzabase Gene Name Synonym(s)=Serpin-ZXB;Note=Similar to Protein zx.;Transcript_evidence=AK107194 (DDBJ%2C Best hit);ORF_evidence=B6TS23 (UniProt);GO=Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Protease inhibitor I4%2C serpin (IPR000215),Protease inhibitor I4%2C serpin%2C plant (IPR015554),Protease inhibitor I4%2C serpin%2C conserved site (IPR023795),Serpin domain (IPR023796);NIAS_FLcDNA=002-125-A07;Oryzabase=11581;Expression=AK107194;TENOR=Os03t0610800-01;KEGG=Os03t0610800-01
Chr03	irgsp1_rep	five_prime_UTR	23054583	23054621	.	+	.	Parent=Os03t0610800-01
Chr03	irgsp1_rep	CDS	23054622	23055065	.	+	0	Parent=Os03t0610800-01
Chr03	irgsp1_rep	CDS	23066297	23066563	.	+	0	Parent=Os03t0610800-01
Chr03	irgsp1_rep	CDS	23067482	23067988	.	+	0	Parent=Os03t0610800-01
Chr03	irgsp1_rep	three_prime_UTR	23067989	23068159	.	+	.	Parent=Os03t0610800-01
Chr03	irgsp1_rep	mRNA	23068746	23071156	.	-	.	ID=Os03t0610900-01;Name=Os03t0610900-01;Locus_id=Os03g0610900;RAP-DB Gene Symbol Synonym(s)=SAPK10%2C OsSAPK10;RAP-DB Gene Name Synonym(s)=STRESS/ABA-ACTIVATED PROTEIN KINASE 10%2C stress/ABA-activated protein kinase 10%2C Stress-Activated Protein Kinase 10;CGSNL Gene Symbol=SAPK10;CGSNL Gene Name=STRESS/ABA-ACTIVATED PROTEIN KINASE 10;Oryzabase Gene Symbol Synonym(s)=OsSAPK10;Oryzabase Gene Name Synonym(s)=stress/ABA-activated protein kinase 10%2C Stress-Activated Protein Kinase 10%2C Osmotic stress/abscisic acid-activated protein kinase 10;Note=Serine/threonine protein kinase%2C Abscisic acid (ABA)-activated protein kinase%2C Hyperosmotic stress response%2C ABA signal transduction;Transcript_evidence=AB125311,AK100538;ORF_evidence=Q75H77;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine/threonine/dual specificity protein kinase%2C catalytic  domain (IPR002290),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J023102D08;Manual Curation=December 11%2C 2015;Literature_PMID=16359387,15084714;Oryzabase=9818;Expression=AK100538;TENOR=Os03t0610900-01;KEGG=Os03t0610900-01 (EC:2.7.1.37, EC:2.7.11.11)
Chr03	irgsp1_rep	five_prime_UTR	23071077	23071156	.	-	.	Parent=Os03t0610900-01
Chr03	irgsp1_rep	CDS	23070723	23071076	.	-	0	Parent=Os03t0610900-01
Chr03	irgsp1_rep	CDS	23070568	23070621	.	-	0	Parent=Os03t0610900-01
Chr03	irgsp1_rep	CDS	23070325	23070417	.	-	0	Parent=Os03t0610900-01
Chr03	irgsp1_rep	CDS	23070017	23070109	.	-	0	Parent=Os03t0610900-01
Chr03	irgsp1_rep	CDS	23069743	23069847	.	-	0	Parent=Os03t0610900-01
Chr03	irgsp1_rep	CDS	23069555	23069653	.	-	0	Parent=Os03t0610900-01
Chr03	irgsp1_rep	CDS	23069171	23069461	.	-	0	Parent=Os03t0610900-01
Chr03	irgsp1_rep	three_prime_UTR	23068746	23069170	.	-	.	Parent=Os03t0610900-01
Chr03	irgsp1_rep	mRNA	23076780	23077959	.	+	.	ID=Os03t0611100-01;Name=Os03t0611100-01;Locus_id=Os03g0611100;CGSNL Gene Symbol=MIR1428E%2C MIR1428D;CGSNL Gene Name=MICRORNA1428E%2C MICRORNA1428D;Oryzabase Gene Symbol Synonym(s)=OsmiR1428e%2C miR1428e%2C osa-miR1428e%2C osa-MIR1428e%2C miR1428e_3posa-miR1428e-3p%2C miR1428d%2C osa-miR1428d%2C osa-MIR1428d;Oryzabase Gene Name Synonym(s)=microRNA1428e%2C osa-miRNA1428e%2C MICRORNA1428d%2C osa-miRNA1428d;Note=Non-protein coding transcript.;Transcript_evidence=AK102950 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J033115D13;Oryzabase=12787,8530;TENOR=Os03t0611100-01
Chr03	irgsp1_rep	exon	23076780	23077959	.	+	.	Parent=Os03t0611100-01
Chr03	irgsp1_rep	mRNA	23086275	23090241	.	+	.	ID=Os03t0611200-01;Name=Os03t0611200-01;Locus_id=Os03g0611200;Note=Aldo/keto reductase family protein.;Transcript_evidence=AK065587 (DDBJ%2C Best hit);ORF_evidence=Q10GW4 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldo/keto reductase (IPR001395),Aldo/keto reductase subgroup (IPR020471),NADP-dependent oxidoreductase domain (IPR023210);NIAS_FLcDNA=J013030E14;Expression=AK065587;TENOR=Os03t0611200-01;KEGG=Os03t0611200-01
Chr03	irgsp1_rep	five_prime_UTR	23086275	23086457	.	+	.	Parent=Os03t0611200-01
Chr03	irgsp1_rep	five_prime_UTR	23086702	23086712	.	+	.	Parent=Os03t0611200-01
Chr03	irgsp1_rep	CDS	23086713	23086916	.	+	0	Parent=Os03t0611200-01
Chr03	irgsp1_rep	CDS	23087010	23087105	.	+	0	Parent=Os03t0611200-01
Chr03	irgsp1_rep	CDS	23087208	23087291	.	+	0	Parent=Os03t0611200-01
Chr03	irgsp1_rep	CDS	23087692	23087852	.	+	0	Parent=Os03t0611200-01
Chr03	irgsp1_rep	CDS	23088577	23088694	.	+	1	Parent=Os03t0611200-01
Chr03	irgsp1_rep	CDS	23089033	23089168	.	+	0	Parent=Os03t0611200-01
Chr03	irgsp1_rep	CDS	23089470	23089648	.	+	2	Parent=Os03t0611200-01
Chr03	irgsp1_rep	CDS	23089809	23090048	.	+	0	Parent=Os03t0611200-01
Chr03	irgsp1_rep	three_prime_UTR	23090049	23090241	.	+	.	Parent=Os03t0611200-01
Chr03	irgsp1_rep	mRNA	23093191	23096386	.	-	.	ID=Os03t0611700-01;Name=Os03t0611700-01;Locus_id=Os03g0611700;Note=Primosome PriB/single-strand DNA-binding domain containing protein.;Transcript_evidence=AK102144 (DDBJ%2C Best hit);ORF_evidence=A3AKD2 (UniProt);GO=Molecular Function: single-stranded DNA binding (GO:0003697);InterPro=Primosome PriB/single-strand DNA-binding (IPR000424),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=J033086A20;Expression=AK102144;TENOR=Os03t0611700-01;KEGG=Os03t0611700-01
Chr03	irgsp1_rep	five_prime_UTR	23096350	23096386	.	-	.	Parent=Os03t0611700-01
Chr03	irgsp1_rep	CDS	23096042	23096349	.	-	0	Parent=Os03t0611700-01
Chr03	irgsp1_rep	CDS	23095169	23095319	.	-	1	Parent=Os03t0611700-01
Chr03	irgsp1_rep	three_prime_UTR	23093191	23095168	.	-	.	Parent=Os03t0611700-01
Chr03	irgsp1_rep	mRNA	23093189	23096386	.	-	.	ID=Os03t0611700-02;Name=Os03t0611700-02;Locus_id=Os03g0611700;Note=Conserved hypothetical protein.;Transcript_evidence=AK063407 (DDBJ%2C Best hit);ORF_evidence=A3AKD2 (UniProt);NIAS_FLcDNA=001-115-A10;TENOR=Os03t0611700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	23096350	23096386	.	-	.	Parent=Os03t0611700-02
Chr03	irgsp1_rep	CDS	23096038	23096349	.	-	0	Parent=Os03t0611700-02
Chr03	irgsp1_rep	three_prime_UTR	23093832	23096037	.	-	.	Parent=Os03t0611700-02
Chr03	irgsp1_rep	three_prime_UTR	23093189	23093751	.	-	.	Parent=Os03t0611700-02
Chr03	irgsp1_rep	mRNA	23124295	23124942	.	-	.	ID=Os03t0612201-00;Name=Os03t0612201-00;Locus_id=Os03g0612201;Note=Hypothetical conserved gene.;Transcript_evidence=AK332041 (DDBJ);ORF_evidence=NP_001174961.1 (RefSeq);TENOR=Os03t0612201-00;KEGG=Os03t0612201-00
Chr03	irgsp1_rep	CDS	23124295	23124942	.	-	0	Parent=Os03t0612201-00
Chr03	irgsp1_rep	mRNA	23124509	23128906	.	+	.	ID=Os03t0612400-00;Name=Os03t0612400-00;Locus_id=Os03g0612400;Oryzabase Gene Symbol Synonym(s)=OsSTA104;Note=Similar to ASL1.;Transcript_evidence=BT036180 (DDBJ);ORF_evidence=NP_201488.1 (RefSeq);InterPro=Lateral organ boundaries%2C LOB (IPR004883);Oryzabase=19396;TENOR=Os03t0612400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	23124509	23124792	.	+	0	Parent=Os03t0612400-00
Chr03	irgsp1_rep	CDS	23127997	23128906	.	+	1	Parent=Os03t0612400-00
Chr03	irgsp1_rep	mRNA	23127975	23128884	.	-	.	ID=Os03t0612450-00;Name=Os03t0612450-00;Locus_id=Os03g0612450;Note=Hypothetical protein.;Transcript_evidence=BT060874 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0612450-00
Chr03	irgsp1_rep	five_prime_UTR	23128538	23128884	.	-	.	Parent=Os03t0612450-00
Chr03	irgsp1_rep	CDS	23128394	23128537	.	-	0	Parent=Os03t0612450-00
Chr03	irgsp1_rep	CDS	23127975	23128252	.	-	0	Parent=Os03t0612450-00
Chr03	irgsp1_rep	mRNA	23135535	23140171	.	-	.	ID=Os03t0612600-01;Name=Os03t0612600-01;Locus_id=Os03g0612600;Note=Similar to Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 containing protein%2C expressed.;Transcript_evidence=AK071403 (DDBJ%2C Best hit);ORF_evidence=Q10GV3 (UniProt);GO=Biological Process: translation (GO:0006412);InterPro=Ribosomal protein L25/Gln-tRNA synthetase%2C anti-codon-binding domain (IPR011035);NIAS_FLcDNA=J023089B10;TENOR=Os03t0612600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	23139812	23140171	.	-	0	Parent=Os03t0612600-01
Chr03	irgsp1_rep	CDS	23139184	23139313	.	-	0	Parent=Os03t0612600-01
Chr03	irgsp1_rep	CDS	23135913	23135950	.	-	2	Parent=Os03t0612600-01
Chr03	irgsp1_rep	three_prime_UTR	23135535	23135912	.	-	.	Parent=Os03t0612600-01
Chr03	irgsp1_rep	mRNA	23158022	23159127	.	-	.	ID=Os03t0613100-01;Name=Os03t0613100-01;Locus_id=Os03g0613100;Note=Conserved hypothetical protein.;Transcript_evidence=AK059826 (DDBJ%2C Best hit);ORF_evidence=Q75H55 (UniProt);NIAS_FLcDNA=006-205-F07;TENOR=Os03t0613100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	23158641	23159127	.	-	.	Parent=Os03t0613100-01
Chr03	irgsp1_rep	CDS	23158414	23158640	.	-	0	Parent=Os03t0613100-01
Chr03	irgsp1_rep	CDS	23158347	23158347	.	-	1	Parent=Os03t0613100-01
Chr03	irgsp1_rep	three_prime_UTR	23158022	23158346	.	-	.	Parent=Os03t0613100-01
Chr03	irgsp1_rep	mRNA	23221870	23223665	.	+	.	ID=Os03t0614901-01;Name=Os03t0614901-01;Locus_id=Os03g0614901;Note=Conserved hypothetical protein.;Transcript_evidence=AK242569 (DDBJ%2C Best hit);ORF_evidence=Q6YUM4 (UniProt);NIAS_FLcDNA=J090006F23;TENOR=Os03t0614901-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	23221870	23222262	.	+	.	Parent=Os03t0614901-01
Chr03	irgsp1_rep	CDS	23222263	23222430	.	+	0	Parent=Os03t0614901-01
Chr03	irgsp1_rep	three_prime_UTR	23222431	23223665	.	+	.	Parent=Os03t0614901-01
Chr03	irgsp1_rep	mRNA	23280702	23285567	.	-	.	ID=Os03t0615300-01;Name=Os03t0615300-01;Locus_id=Os03g0615300;Note=Protein of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK072294 (DDBJ%2C Best hit);ORF_evidence=A3AKE6 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=J023013B15;Expression=AK072294;TENOR=Os03t0615300-01;KEGG=Os03t0615300-01
Chr03	irgsp1_rep	five_prime_UTR	23285508	23285567	.	-	.	Parent=Os03t0615300-01
Chr03	irgsp1_rep	CDS	23284509	23285507	.	-	0	Parent=Os03t0615300-01
Chr03	irgsp1_rep	three_prime_UTR	23284098	23284508	.	-	.	Parent=Os03t0615300-01
Chr03	irgsp1_rep	three_prime_UTR	23280702	23283174	.	-	.	Parent=Os03t0615300-01
Chr03	irgsp1_rep	mRNA	23292599	23294363	.	-	.	ID=Os03t0615700-01;Name=Os03t0615700-01;Locus_id=Os03g0615700;Note=Hypothetical conserved gene.;Transcript_evidence=AK288363 (DDBJ%2C Best hit);ORF_evidence=NP_001173539.1 (RefSeq);NIAS_FLcDNA=J090025C21;TENOR=Os03t0615700-01;KEGG=Os03t0615700-01
Chr03	irgsp1_rep	five_prime_UTR	23294314	23294363	.	-	.	Parent=Os03t0615700-01
Chr03	irgsp1_rep	CDS	23294200	23294313	.	-	0	Parent=Os03t0615700-01
Chr03	irgsp1_rep	three_prime_UTR	23292599	23294199	.	-	.	Parent=Os03t0615700-01
Chr03	irgsp1_rep	mRNA	23334978	23340914	.	+	.	ID=Os03t0616300-01;Name=Os03t0616300-01;Locus_id=Os03g0616300;Oryzabase Gene Name Synonym(s)=DNA polymerase kappa;Note=Similar to DNA polymerase kappa (EC 2.7.7.7) (DINB protein) (DINP). Splice isoform 4.;Transcript_evidence=AK066372 (DDBJ%2C Best hit);ORF_evidence=NP_175420.3 (RefSeq);GO=Biological Process: DNA repair (GO:0006281),Molecular Function: damaged DNA binding (GO:0003684),Molecular Function: DNA-directed DNA polymerase activity (GO:0003887);InterPro=DNA-repair protein%2C UmuC-like (IPR001126),DNA polymerase%2C Y-family%2C little finger domain (IPR017961),DNA polymerase IV/DinB homologue%2C little finger domain (IPR017962),DNA-repair protein%2C UmuC-like%2C N-terminal (IPR017963);NIAS_FLcDNA=J013064K08;Oryzabase=21289;Expression=AK066372;TENOR=Os03t0616300-01;KEGG=Os03t0616300-01 (EC:2.7.7.7)
Chr03	irgsp1_rep	five_prime_UTR	23334978	23335248	.	+	.	Parent=Os03t0616300-01
Chr03	irgsp1_rep	CDS	23335249	23335327	.	+	0	Parent=Os03t0616300-01
Chr03	irgsp1_rep	CDS	23335594	23335628	.	+	2	Parent=Os03t0616300-01
Chr03	irgsp1_rep	CDS	23335870	23336046	.	+	0	Parent=Os03t0616300-01
Chr03	irgsp1_rep	CDS	23336314	23336437	.	+	0	Parent=Os03t0616300-01
Chr03	irgsp1_rep	CDS	23336523	23336623	.	+	2	Parent=Os03t0616300-01
Chr03	irgsp1_rep	CDS	23336770	23336856	.	+	0	Parent=Os03t0616300-01
Chr03	irgsp1_rep	CDS	23337234	23337329	.	+	0	Parent=Os03t0616300-01
Chr03	irgsp1_rep	CDS	23337642	23337762	.	+	0	Parent=Os03t0616300-01
Chr03	irgsp1_rep	CDS	23337908	23338036	.	+	2	Parent=Os03t0616300-01
Chr03	irgsp1_rep	CDS	23338891	23338982	.	+	2	Parent=Os03t0616300-01
Chr03	irgsp1_rep	CDS	23339093	23339204	.	+	0	Parent=Os03t0616300-01
Chr03	irgsp1_rep	CDS	23339622	23339974	.	+	2	Parent=Os03t0616300-01
Chr03	irgsp1_rep	CDS	23340103	23340332	.	+	0	Parent=Os03t0616300-01
Chr03	irgsp1_rep	CDS	23340612	23340729	.	+	1	Parent=Os03t0616300-01
Chr03	irgsp1_rep	three_prime_UTR	23340730	23340914	.	+	.	Parent=Os03t0616300-01
Chr03	irgsp1_rep	mRNA	23335043	23338640	.	+	.	ID=Os03t0616300-02;Name=Os03t0616300-02;Locus_id=Os03g0616300;Oryzabase Gene Name Synonym(s)=DNA polymerase kappa;Note=Similar to F2J10.13 protein.;Transcript_evidence=AK102930 (DDBJ%2C Best hit);ORF_evidence=NP_175420.3 (RefSeq);GO=Biological Process: DNA repair (GO:0006281),Molecular Function: damaged DNA binding (GO:0003684),Molecular Function: DNA-directed DNA polymerase activity (GO:0003887);InterPro=DNA-repair protein%2C UmuC-like (IPR001126),DNA-repair protein%2C UmuC-like%2C N-terminal (IPR017963);NIAS_FLcDNA=J033114G19;Oryzabase=21289;Expression=AK102930;TENOR=Os03t0616300-02;KEGG=Os03t0616300-02 (EC:2.7.7.7)
Chr03	irgsp1_rep	five_prime_UTR	23335043	23335248	.	+	.	Parent=Os03t0616300-02
Chr03	irgsp1_rep	CDS	23335249	23335327	.	+	0	Parent=Os03t0616300-02
Chr03	irgsp1_rep	CDS	23335594	23335766	.	+	2	Parent=Os03t0616300-02
Chr03	irgsp1_rep	CDS	23335873	23336046	.	+	0	Parent=Os03t0616300-02
Chr03	irgsp1_rep	CDS	23336314	23336437	.	+	0	Parent=Os03t0616300-02
Chr03	irgsp1_rep	CDS	23336523	23336623	.	+	2	Parent=Os03t0616300-02
Chr03	irgsp1_rep	CDS	23336770	23336856	.	+	0	Parent=Os03t0616300-02
Chr03	irgsp1_rep	CDS	23337234	23337371	.	+	0	Parent=Os03t0616300-02
Chr03	irgsp1_rep	three_prime_UTR	23337372	23338640	.	+	.	Parent=Os03t0616300-02
Chr03	irgsp1_rep	mRNA	23341833	23347287	.	+	.	ID=Os03t0616400-01;Name=Os03t0616400-01;Locus_id=Os03g0616400;CGSNL Gene Symbol=ACA3;CGSNL Gene Name=CA2+-ATPASE 3;Oryzabase Gene Symbol Synonym(s)=osACA3%2C OsACA4%2C OsPM3ATPB;Oryzabase Gene Name Synonym(s)=Ca2+ P-Type ATPase 3;Note=Similar to Plasma membrane Ca2+-ATPase.;Transcript_evidence=AK065088 (DDBJ%2C Best hit);ORF_evidence=Q9FVE8 (UniProt);GO=Biological Process: ATP biosynthetic process (GO:0006754),Biological Process: cation transport (GO:0006812),Biological Process: metabolic process (GO:0008152),Biological Process: calcium ion transmembrane transport (GO:0070588),Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: calcium-transporting ATPase activity (GO:0005388),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C catalyzing transmembrane movement of substances (GO:0016820),Molecular Function: metal ion binding (GO:0046872);InterPro=ATPase%2C P-type%2C H+ transporting proton pump (IPR000695),ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),ATPase%2C P-type cation-transporter%2C N-terminal (IPR004014),Haloacid dehalogenase-like hydrolase (IPR005834),ATPase%2C P-type cation-transporter%2C C-terminal (IPR006068),ATPase%2C P-type%2C calcium-transporting%2C PMCA-type (IPR006408),ATPase%2C P-type%2C ATPase-associated domain (IPR008250),ATPase%2C P-type phosphorylation site (IPR018303),HAD-like domain (IPR023214),ATPase%2C P-type%2C  transmembrane domain (IPR023298),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C  P-type%2C cytoplasmic transduction domain A (IPR023300),ATPase%2C cation-transporting%2C domain N (IPR023306);NIAS_FLcDNA=J013001L20;Oryzabase=13235;Expression=AK065088;TENOR=Os03t0616400-01;KEGG=Os03t0616400-01 (EC:3.6.3.8)
Chr03	irgsp1_rep	five_prime_UTR	23341833	23341841	.	+	.	Parent=Os03t0616400-01
Chr03	irgsp1_rep	CDS	23341842	23342033	.	+	0	Parent=Os03t0616400-01
Chr03	irgsp1_rep	CDS	23342790	23342844	.	+	0	Parent=Os03t0616400-01
Chr03	irgsp1_rep	CDS	23342981	23344929	.	+	2	Parent=Os03t0616400-01
Chr03	irgsp1_rep	CDS	23345020	23345178	.	+	0	Parent=Os03t0616400-01
Chr03	irgsp1_rep	CDS	23345947	23346118	.	+	0	Parent=Os03t0616400-01
Chr03	irgsp1_rep	CDS	23346191	23346489	.	+	2	Parent=Os03t0616400-01
Chr03	irgsp1_rep	CDS	23346679	23346954	.	+	0	Parent=Os03t0616400-01
Chr03	irgsp1_rep	three_prime_UTR	23346955	23347287	.	+	.	Parent=Os03t0616400-01
Chr03	irgsp1_rep	mRNA	23344516	23347308	.	+	.	ID=Os03t0616400-02;Name=Os03t0616400-02;Locus_id=Os03g0616400;CGSNL Gene Symbol=ACA3;CGSNL Gene Name=CA2+-ATPASE 3;Oryzabase Gene Symbol Synonym(s)=osACA3%2C OsACA4%2C OsPM3ATPB;Oryzabase Gene Name Synonym(s)=Ca2+ P-Type ATPase 3;Note=Similar to P-type ATPase (Fragment).;Transcript_evidence=AK071938 (DDBJ%2C Best hit);ORF_evidence=Q94IN1 (UniProt);GO=Biological Process: ATP biosynthetic process (GO:0006754),Biological Process: cation transport (GO:0006812),Biological Process: metabolic process (GO:0008152),Biological Process: calcium ion transmembrane transport (GO:0070588),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: calcium-transporting ATPase activity (GO:0005388),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C catalyzing transmembrane movement of substances (GO:0016820);InterPro=ATPase%2C P-type%2C H+ transporting proton pump (IPR000695),ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),Haloacid dehalogenase-like hydrolase (IPR005834),ATPase%2C P-type cation-transporter%2C C-terminal (IPR006068),ATPase%2C P-type%2C calcium-transporting%2C PMCA-type (IPR006408),HAD-like domain (IPR023214),ATPase%2C P-type%2C  transmembrane domain (IPR023298),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C cation-transporting%2C domain N (IPR023306);NIAS_FLcDNA=J013083I02;Oryzabase=13235;Expression=AK071938;TENOR=Os03t0616400-02;KEGG=Os03t0616400-02 (EC:3.6.3.8)
Chr03	irgsp1_rep	CDS	23344516	23344929	.	+	0	Parent=Os03t0616400-02
Chr03	irgsp1_rep	CDS	23345020	23345178	.	+	0	Parent=Os03t0616400-02
Chr03	irgsp1_rep	CDS	23345947	23346118	.	+	0	Parent=Os03t0616400-02
Chr03	irgsp1_rep	CDS	23346191	23346489	.	+	2	Parent=Os03t0616400-02
Chr03	irgsp1_rep	CDS	23346679	23346954	.	+	0	Parent=Os03t0616400-02
Chr03	irgsp1_rep	three_prime_UTR	23346955	23347308	.	+	.	Parent=Os03t0616400-02
Chr03	irgsp1_rep	mRNA	23351502	23351813	.	+	.	ID=Os03t0616450-00;Name=Os03t0616450-00;Locus_id=Os03g0616450;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001173540.1 (RefSeq);TENOR=Os03t0616450-00;KEGG=Os03t0616450-00
Chr03	irgsp1_rep	CDS	23351502	23351813	.	+	0	Parent=Os03t0616450-00
Chr03	irgsp1_rep	mRNA	23353421	23360735	.	-	.	ID=Os03t0616500-00;Name=Os03t0616500-00;Locus_id=Os03g0616500;Note=Similar to HEAT repeat family protein.;Transcript_evidence=BT053846 (DDBJ);ORF_evidence=Q10GR2 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),Condensin-2 complex subunit G2 (IPR024741);TENOR=Os03t0616500-00;KEGG=Os03t0616500-00
Chr03	irgsp1_rep	five_prime_UTR	23360681	23360735	.	-	.	Parent=Os03t0616500-00
Chr03	irgsp1_rep	CDS	23359691	23360680	.	-	0	Parent=Os03t0616500-00
Chr03	irgsp1_rep	CDS	23356186	23356650	.	-	0	Parent=Os03t0616500-00
Chr03	irgsp1_rep	CDS	23355039	23356055	.	-	0	Parent=Os03t0616500-00
Chr03	irgsp1_rep	CDS	23354612	23354749	.	-	0	Parent=Os03t0616500-00
Chr03	irgsp1_rep	CDS	23354364	23354375	.	-	0	Parent=Os03t0616500-00
Chr03	irgsp1_rep	three_prime_UTR	23353421	23354363	.	-	.	Parent=Os03t0616500-00
Chr03	irgsp1_rep	mRNA	23369001	23376106	.	-	.	ID=Os03t0616700-01;Name=Os03t0616700-01;Locus_id=Os03g0616700;Note=Similar to Importin-beta N-terminal domain containing protein%2C expressed.;Transcript_evidence=AK242181 (DDBJ%2C Best hit);ORF_evidence=Q10GR1 (UniProt);NIAS_FLcDNA=J075160L01;TENOR=Os03t0616700-01;KEGG=Os03t0616700-01
Chr03	irgsp1_rep	CDS	23376044	23376106	.	-	0	Parent=Os03t0616700-01
Chr03	irgsp1_rep	CDS	23375848	23375969	.	-	0	Parent=Os03t0616700-01
Chr03	irgsp1_rep	CDS	23375673	23375760	.	-	1	Parent=Os03t0616700-01
Chr03	irgsp1_rep	CDS	23374873	23374977	.	-	0	Parent=Os03t0616700-01
Chr03	irgsp1_rep	CDS	23374664	23374768	.	-	0	Parent=Os03t0616700-01
Chr03	irgsp1_rep	CDS	23374532	23374584	.	-	0	Parent=Os03t0616700-01
Chr03	irgsp1_rep	CDS	23374386	23374449	.	-	1	Parent=Os03t0616700-01
Chr03	irgsp1_rep	CDS	23374160	23374294	.	-	0	Parent=Os03t0616700-01
Chr03	irgsp1_rep	CDS	23373902	23374014	.	-	0	Parent=Os03t0616700-01
Chr03	irgsp1_rep	CDS	23373727	23373820	.	-	1	Parent=Os03t0616700-01
Chr03	irgsp1_rep	CDS	23373371	23373590	.	-	0	Parent=Os03t0616700-01
Chr03	irgsp1_rep	CDS	23372392	23372522	.	-	2	Parent=Os03t0616700-01
Chr03	irgsp1_rep	CDS	23371348	23371494	.	-	0	Parent=Os03t0616700-01
Chr03	irgsp1_rep	CDS	23370647	23370775	.	-	0	Parent=Os03t0616700-01
Chr03	irgsp1_rep	CDS	23370476	23370574	.	-	0	Parent=Os03t0616700-01
Chr03	irgsp1_rep	CDS	23370298	23370336	.	-	0	Parent=Os03t0616700-01
Chr03	irgsp1_rep	CDS	23369452	23369601	.	-	0	Parent=Os03t0616700-01
Chr03	irgsp1_rep	three_prime_UTR	23369001	23369451	.	-	.	Parent=Os03t0616700-01
Chr03	irgsp1_rep	mRNA	23382713	23382919	.	-	.	ID=Os03t0617101-00;Name=Os03t0617101-00;Locus_id=Os03g0617101;Note=Non-protein coding transcript.;Transcript_evidence=CT835260 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os03t0617101-00
Chr03	irgsp1_rep	exon	23382713	23382919	.	-	.	Parent=Os03t0617101-00
Chr03	irgsp1_rep	mRNA	23410223	23412753	.	-	.	ID=Os03t0617500-01;Name=Os03t0617500-01;Locus_id=Os03g0617500;CGSNL Gene Symbol=CYCD5%3B2;CGSNL Gene Name=CYCLIN-D5-2;Oryzabase Gene Symbol Synonym(s)=CycD5%3B2%2C CycD5%3Bos%3B2%2C Orysa%3BCycD5%3B2%2C Orysa%3BCYCD5%3B2;Oryzabase Gene Name Synonym(s)=D-type cyclin 5%3B2;Note=Cyclin%2C C-terminal domain containing protein.;Transcript_evidence=AK068729 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Cellular Component: nucleus (GO:0005634);InterPro=Cyclin%2C C-terminal (IPR004367),Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763);NIAS_FLcDNA=J013158M19;Oryzabase=13270;TENOR=Os03t0617500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	23412574	23412753	.	-	.	Parent=Os03t0617500-01
Chr03	irgsp1_rep	CDS	23412193	23412573	.	-	0	Parent=Os03t0617500-01
Chr03	irgsp1_rep	CDS	23412010	23412096	.	-	0	Parent=Os03t0617500-01
Chr03	irgsp1_rep	CDS	23411603	23411909	.	-	0	Parent=Os03t0617500-01
Chr03	irgsp1_rep	CDS	23411379	23411512	.	-	2	Parent=Os03t0617500-01
Chr03	irgsp1_rep	CDS	23411069	23411290	.	-	0	Parent=Os03t0617500-01
Chr03	irgsp1_rep	three_prime_UTR	23410223	23411068	.	-	.	Parent=Os03t0617500-01
Chr03	irgsp1_rep	mRNA	23410223	23412718	.	-	.	ID=Os03t0617500-02;Name=Os03t0617500-02;Locus_id=Os03g0617500;CGSNL Gene Symbol=CYCD5%3B2;CGSNL Gene Name=CYCLIN-D5-2;Oryzabase Gene Symbol Synonym(s)=CycD5%3B2%2C CycD5%3Bos%3B2%2C Orysa%3BCycD5%3B2%2C Orysa%3BCYCD5%3B2;Oryzabase Gene Name Synonym(s)=D-type cyclin 5%3B2;Note=Similar to Cyclin-D5-1.;Transcript_evidence=AK119606 (DDBJ%2C Best hit);ORF_evidence=Q0DQA9 (UniProt);NIAS_FLcDNA=002-117-F05;Oryzabase=13270;TENOR=Os03t0617500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	23412547	23412718	.	-	.	Parent=Os03t0617500-02
Chr03	irgsp1_rep	CDS	23412438	23412546	.	-	0	Parent=Os03t0617500-02
Chr03	irgsp1_rep	CDS	23412193	23412255	.	-	2	Parent=Os03t0617500-02
Chr03	irgsp1_rep	CDS	23412010	23412096	.	-	2	Parent=Os03t0617500-02
Chr03	irgsp1_rep	CDS	23411603	23411909	.	-	2	Parent=Os03t0617500-02
Chr03	irgsp1_rep	CDS	23411379	23411512	.	-	1	Parent=Os03t0617500-02
Chr03	irgsp1_rep	CDS	23410914	23411290	.	-	2	Parent=Os03t0617500-02
Chr03	irgsp1_rep	three_prime_UTR	23410223	23410913	.	-	.	Parent=Os03t0617500-02
Chr03	irgsp1_rep	mRNA	23438159	23442295	.	-	.	ID=Os03t0617900-01;Name=Os03t0617900-01;Locus_id=Os03g0617900;Note=Semialdehyde dehydrogenase%2C dimerisation region domain containing protein.;Transcript_evidence=AK071544 (DDBJ%2C Best hit);ORF_evidence=B8AMJ8 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: arginine biosynthetic process (GO:0006526),Biological Process: cellular amino acid biosynthetic process (GO:0008652),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: N-acetyl-gamma-glutamyl-phosphate reductase activity (GO:0003942),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620),Molecular Function: protein dimerization activity (GO:0046983),Molecular Function: NAD binding (GO:0051287);InterPro=Semialdehyde dehydrogenase%2C NAD-binding (IPR000534),N-acetyl-gamma-glutamyl-phosphate reductase%2C type 1 (IPR000706),Semialdehyde dehydrogenase%2C dimerisation domain (IPR012280),NAD(P)-binding domain (IPR016040),N-acetyl-gamma-glutamyl-phosphate reductase%2C active site (IPR023013);NIAS_FLcDNA=J023100D05;Expression=AK071544;TENOR=Os03t0617900-01;KEGG=Os03t0617900-01 (EC:1.2.1.-%2C EC:1.2.1.38)
Chr03	irgsp1_rep	five_prime_UTR	23442044	23442295	.	-	.	Parent=Os03t0617900-01
Chr03	irgsp1_rep	CDS	23441987	23442043	.	-	0	Parent=Os03t0617900-01
Chr03	irgsp1_rep	CDS	23441457	23441519	.	-	0	Parent=Os03t0617900-01
Chr03	irgsp1_rep	CDS	23441228	23441368	.	-	0	Parent=Os03t0617900-01
Chr03	irgsp1_rep	CDS	23441000	23441107	.	-	0	Parent=Os03t0617900-01
Chr03	irgsp1_rep	CDS	23440790	23440876	.	-	0	Parent=Os03t0617900-01
Chr03	irgsp1_rep	CDS	23440597	23440647	.	-	0	Parent=Os03t0617900-01
Chr03	irgsp1_rep	CDS	23440432	23440503	.	-	0	Parent=Os03t0617900-01
Chr03	irgsp1_rep	CDS	23440048	23440167	.	-	0	Parent=Os03t0617900-01
Chr03	irgsp1_rep	CDS	23439749	23439809	.	-	0	Parent=Os03t0617900-01
Chr03	irgsp1_rep	CDS	23439530	23439610	.	-	2	Parent=Os03t0617900-01
Chr03	irgsp1_rep	CDS	23439260	23439339	.	-	2	Parent=Os03t0617900-01
Chr03	irgsp1_rep	CDS	23439053	23439142	.	-	0	Parent=Os03t0617900-01
Chr03	irgsp1_rep	CDS	23438751	23438879	.	-	0	Parent=Os03t0617900-01
Chr03	irgsp1_rep	CDS	23438547	23438654	.	-	0	Parent=Os03t0617900-01
Chr03	irgsp1_rep	three_prime_UTR	23438159	23438546	.	-	.	Parent=Os03t0617900-01
Chr03	irgsp1_rep	mRNA	23450188	23452171	.	-	.	ID=Os03t0618300-01;Name=Os03t0618300-01;Locus_id=Os03g0618300;CGSNL Gene Symbol=2ODD22;CGSNL Gene Name=2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 22;Oryzabase Gene Symbol Synonym(s)=2-ODD22%2C Os2-ODD22%2C Os2ODD22;Oryzabase Gene Name Synonym(s)=2-oxoglutarate-dependent dioxygenase 22;Note=Isopenicillin N synthase family protein.;Transcript_evidence=AK073307 (DDBJ%2C Best hit);ORF_evidence=B6TF99 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Isopenicillin N synthase (IPR002283),Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=J033026A10;Oryzabase=22624;Expression=AK073307;TENOR=Os03t0618300-01;KEGG=Os03t0618300-01
Chr03	irgsp1_rep	five_prime_UTR	23452107	23452171	.	-	.	Parent=Os03t0618300-01
Chr03	irgsp1_rep	CDS	23451637	23452106	.	-	0	Parent=Os03t0618300-01
Chr03	irgsp1_rep	CDS	23451229	23451559	.	-	1	Parent=Os03t0618300-01
Chr03	irgsp1_rep	CDS	23450400	23450657	.	-	0	Parent=Os03t0618300-01
Chr03	irgsp1_rep	three_prime_UTR	23450188	23450399	.	-	.	Parent=Os03t0618300-01
Chr03	irgsp1_rep	mRNA	23451226	23451562	.	+	.	ID=Os03t0618366-00;Name=Os03t0618366-00;Locus_id=Os03g0618366;Note=Non-protein coding transcript.;Transcript_evidence=EU947745 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0618366-00
Chr03	irgsp1_rep	exon	23451226	23451562	.	+	.	Parent=Os03t0618366-00
Chr03	irgsp1_rep	mRNA	23465079	23466595	.	-	.	ID=Os03t0618800-01;Name=Os03t0618800-01;Locus_id=Os03g0618800;Note=Conserved hypothetical protein.;Transcript_evidence=AK241193 (DDBJ%2C Best hit);ORF_evidence=NP_001173542.1 (RefSeq);NIAS_FLcDNA=J065121C01;TENOR=Os03t0618800-01;KEGG=Os03t0618800-01
Chr03	irgsp1_rep	five_prime_UTR	23466454	23466595	.	-	.	Parent=Os03t0618800-01
Chr03	irgsp1_rep	CDS	23465965	23466453	.	-	0	Parent=Os03t0618800-01
Chr03	irgsp1_rep	three_prime_UTR	23465079	23465964	.	-	.	Parent=Os03t0618800-01
Chr03	irgsp1_rep	mRNA	23465925	23466826	.	+	.	ID=Os03t0618900-01;Name=Os03t0618900-01;Locus_id=Os03g0618900;Note=Non-protein coding transcript.;Transcript_evidence=AK073993 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J033073H24;TENOR=Os03t0618900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	exon	23465925	23466826	.	+	.	Parent=Os03t0618900-01
Chr03	irgsp1_rep	mRNA	23474911	23475779	.	-	.	ID=Os03t0619151-00;Name=Os03t0619151-00;Locus_id=Os03g0619151;CGSNL Gene Symbol=DOF13;CGSNL Gene Name=DNA BINDING WITH ONE FINGER 13;Oryzabase Gene Symbol Synonym(s)=OsDof13%2C Dof13%2C OsDof-13;Oryzabase Gene Name Synonym(s)=Dof zinc factor 13%2C Dof transcription factor 13;Note=Similar to Dof domain%2C zinc finger family protein%2C expressed.;Transcript_evidence=AK374830 (DDBJ);ORF_evidence=Q10GP6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C Dof-type (IPR003851);Oryzabase=8803;TENOR=Os03t0619151-00
Chr03	irgsp1_rep	CDS	23474997	23475779	.	-	0	Parent=Os03t0619151-00
Chr03	irgsp1_rep	three_prime_UTR	23474911	23474996	.	-	.	Parent=Os03t0619151-00
Chr03	irgsp1_rep	mRNA	23485494	23490540	.	+	.	ID=Os03t0619400-01;Name=Os03t0619400-01;Locus_id=Os03g0619400;Note=Chaperone%2C tailless complex polypeptide 1 domain containing protein.;Transcript_evidence=AK242135 (DDBJ%2C Best hit);ORF_evidence=B6T8X5 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: cellular protein metabolic process (GO:0044267),Molecular Function: ATP binding (GO:0005524),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Chaperonin TCP-1%2C conserved site (IPR002194),Chaperonin Cpn60/TCP-1 (IPR002423),T-complex protein 1%2C beta subunit (IPR012716),Chaperone%2C tailless complex polypeptide 1 (IPR017998);NIAS_FLcDNA=J075149M11;TENOR=Os03t0619400-01;KEGG=Os03t0619400-01
Chr03	irgsp1_rep	five_prime_UTR	23485494	23485710	.	+	.	Parent=Os03t0619400-01
Chr03	irgsp1_rep	five_prime_UTR	23487049	23487052	.	+	.	Parent=Os03t0619400-01
Chr03	irgsp1_rep	CDS	23487053	23487109	.	+	0	Parent=Os03t0619400-01
Chr03	irgsp1_rep	CDS	23487217	23487282	.	+	0	Parent=Os03t0619400-01
Chr03	irgsp1_rep	CDS	23487370	23487481	.	+	0	Parent=Os03t0619400-01
Chr03	irgsp1_rep	CDS	23487673	23487801	.	+	2	Parent=Os03t0619400-01
Chr03	irgsp1_rep	CDS	23488228	23488299	.	+	2	Parent=Os03t0619400-01
Chr03	irgsp1_rep	CDS	23488678	23488793	.	+	2	Parent=Os03t0619400-01
Chr03	irgsp1_rep	CDS	23488927	23489003	.	+	0	Parent=Os03t0619400-01
Chr03	irgsp1_rep	CDS	23489221	23489706	.	+	1	Parent=Os03t0619400-01
Chr03	irgsp1_rep	CDS	23489806	23490121	.	+	1	Parent=Os03t0619400-01
Chr03	irgsp1_rep	CDS	23490202	23490348	.	+	0	Parent=Os03t0619400-01
Chr03	irgsp1_rep	three_prime_UTR	23490349	23490540	.	+	.	Parent=Os03t0619400-01
Chr03	irgsp1_rep	mRNA	23488675	23489604	.	-	.	ID=Os03t0619501-00;Name=Os03t0619501-00;Locus_id=Os03g0619501;Note=Hypothetical gene.;Transcript_evidence=EU943459 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0619501-00;KEGG=Os03t0619501-00
Chr03	irgsp1_rep	five_prime_UTR	23489513	23489604	.	-	.	Parent=Os03t0619501-00
Chr03	irgsp1_rep	CDS	23489282	23489512	.	-	0	Parent=Os03t0619501-00
Chr03	irgsp1_rep	three_prime_UTR	23489234	23489281	.	-	.	Parent=Os03t0619501-00
Chr03	irgsp1_rep	three_prime_UTR	23488920	23489020	.	-	.	Parent=Os03t0619501-00
Chr03	irgsp1_rep	three_prime_UTR	23488675	23488787	.	-	.	Parent=Os03t0619501-00
Chr03	irgsp1_rep	mRNA	23491995	23496324	.	+	.	ID=Os03t0619600-01;Name=Os03t0619600-01;Locus_id=Os03g0619600;Note=Transcriptional factor B3 family protein.;Transcript_evidence=AK119399 (DDBJ%2C Best hit);ORF_evidence=Q6AV22 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=001-132-D12;Expression=AK119399;TENOR=Os03t0619600-01;KEGG=Os03t0619600-01
Chr03	irgsp1_rep	five_prime_UTR	23491995	23492873	.	+	.	Parent=Os03t0619600-01
Chr03	irgsp1_rep	five_prime_UTR	23493418	23493476	.	+	.	Parent=Os03t0619600-01
Chr03	irgsp1_rep	CDS	23493477	23493599	.	+	0	Parent=Os03t0619600-01
Chr03	irgsp1_rep	CDS	23493828	23494245	.	+	0	Parent=Os03t0619600-01
Chr03	irgsp1_rep	CDS	23494337	23494545	.	+	2	Parent=Os03t0619600-01
Chr03	irgsp1_rep	CDS	23494872	23495238	.	+	0	Parent=Os03t0619600-01
Chr03	irgsp1_rep	CDS	23495337	23495569	.	+	2	Parent=Os03t0619600-01
Chr03	irgsp1_rep	CDS	23495929	23496189	.	+	0	Parent=Os03t0619600-01
Chr03	irgsp1_rep	three_prime_UTR	23496190	23496324	.	+	.	Parent=Os03t0619600-01
Chr03	irgsp1_rep	mRNA	23496337	23497397	.	+	.	ID=Os03t0619700-01;Name=Os03t0619700-01;Locus_id=Os03g0619700;Note=Conserved hypothetical protein.;Transcript_evidence=AK243426 (DDBJ%2C Best hit);ORF_evidence=NP_001173543.1 (RefSeq);NIAS_FLcDNA=J100067J05;TENOR=Os03t0619700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	23496337	23496984	.	+	0	Parent=Os03t0619700-01
Chr03	irgsp1_rep	three_prime_UTR	23496985	23497397	.	+	.	Parent=Os03t0619700-01
Chr03	irgsp1_rep	mRNA	23500021	23503488	.	+	.	ID=Os03t0619800-00;Name=Os03t0619800-00;Locus_id=Os03g0619800;Note=Transcriptional factor B3 domain containing protein.;Transcript_evidence=AK373205 (DDBJ);ORF_evidence=Q6AV21 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);TENOR=Os03t0619800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	23500021	23500143	.	+	0	Parent=Os03t0619800-00
Chr03	irgsp1_rep	CDS	23500391	23501104	.	+	0	Parent=Os03t0619800-00
Chr03	irgsp1_rep	CDS	23501377	23501628	.	+	0	Parent=Os03t0619800-00
Chr03	irgsp1_rep	CDS	23501881	23502063	.	+	0	Parent=Os03t0619800-00
Chr03	irgsp1_rep	CDS	23503213	23503488	.	+	0	Parent=Os03t0619800-00
Chr03	irgsp1_rep	mRNA	23508909	23510727	.	+	.	ID=Os03t0619850-00;Name=Os03t0619850-00;Locus_id=Os03g0619850;Note=Putative B3 domain-containing protein Os03g0619850.;Transcript_evidence=Q10GP0 (UniProt);ORF_evidence=Q10GP0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);TENOR=Os03t0619850-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	23508909	23509031	.	+	0	Parent=Os03t0619850-00
Chr03	irgsp1_rep	CDS	23509609	23509846	.	+	0	Parent=Os03t0619850-00
Chr03	irgsp1_rep	CDS	23510188	23510429	.	+	2	Parent=Os03t0619850-00
Chr03	irgsp1_rep	CDS	23510572	23510727	.	+	0	Parent=Os03t0619850-00
Chr03	irgsp1_rep	mRNA	23512612	23513573	.	-	.	ID=Os03t0619875-01;Name=Os03t0619875-01;Locus_id=Os03g0619875;Note=Conserved hypothetical protein.;Transcript_evidence=AK243621 (DDBJ%2C Best hit);ORF_evidence=NP_001173545.1 (RefSeq);NIAS_FLcDNA=J100086B10;TENOR=Os03t0619875-01;KEGG=Os03t0619875-01
Chr03	irgsp1_rep	five_prime_UTR	23513502	23513573	.	-	.	Parent=Os03t0619875-01
Chr03	irgsp1_rep	CDS	23512998	23513501	.	-	0	Parent=Os03t0619875-01
Chr03	irgsp1_rep	three_prime_UTR	23512612	23512997	.	-	.	Parent=Os03t0619875-01
Chr03	irgsp1_rep	mRNA	23523560	23528315	.	+	.	ID=Os03t0620400-01;Name=Os03t0620400-01;Locus_id=Os03g0620400;Note=Hypothetical conserved gene.;Transcript_evidence=AK102169 (DDBJ%2C Best hit);ORF_evidence=Q851W5-2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=J033086H19;Expression=AK102169;TENOR=Os03t0620400-01;KEGG=Os03t0620400-01
Chr03	irgsp1_rep	five_prime_UTR	23523560	23525397	.	+	.	Parent=Os03t0620400-01
Chr03	irgsp1_rep	five_prime_UTR	23525817	23526261	.	+	.	Parent=Os03t0620400-01
Chr03	irgsp1_rep	five_prime_UTR	23526398	23526920	.	+	.	Parent=Os03t0620400-01
Chr03	irgsp1_rep	CDS	23526921	23527604	.	+	0	Parent=Os03t0620400-01
Chr03	irgsp1_rep	CDS	23527915	23528175	.	+	0	Parent=Os03t0620400-01
Chr03	irgsp1_rep	three_prime_UTR	23528176	23528315	.	+	.	Parent=Os03t0620400-01
Chr03	irgsp1_rep	mRNA	23533463	23538865	.	+	.	ID=Os03t0620500-01;Name=Os03t0620500-01;Locus_id=Os03g0620500;Oryzabase Gene Symbol Synonym(s)=OsSTA105;Note=Transcriptional factor B3 family protein.;Transcript_evidence=AK100451 (DDBJ%2C Best hit);ORF_evidence=B9F9R1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=J023090P20;Oryzabase=19397;Expression=AK100451;TENOR=Os03t0620500-01;KEGG=Os03t0620500-01
Chr03	irgsp1_rep	five_prime_UTR	23533463	23533586	.	+	.	Parent=Os03t0620500-01
Chr03	irgsp1_rep	five_prime_UTR	23535160	23535164	.	+	.	Parent=Os03t0620500-01
Chr03	irgsp1_rep	CDS	23535165	23535287	.	+	0	Parent=Os03t0620500-01
Chr03	irgsp1_rep	CDS	23535701	23535913	.	+	0	Parent=Os03t0620500-01
Chr03	irgsp1_rep	three_prime_UTR	23535914	23536138	.	+	.	Parent=Os03t0620500-01
Chr03	irgsp1_rep	three_prime_UTR	23536274	23536497	.	+	.	Parent=Os03t0620500-01
Chr03	irgsp1_rep	three_prime_UTR	23536979	23537396	.	+	.	Parent=Os03t0620500-01
Chr03	irgsp1_rep	three_prime_UTR	23537478	23537695	.	+	.	Parent=Os03t0620500-01
Chr03	irgsp1_rep	three_prime_UTR	23538338	23538865	.	+	.	Parent=Os03t0620500-01
Chr03	irgsp1_rep	mRNA	23545490	23547647	.	-	.	ID=Os03t0620800-01;Name=Os03t0620800-01;Locus_id=Os03g0620800;Note=Similar to SEC1-family transport protein SLY1 (AtSLY1).;Transcript_evidence=AK071474 (DDBJ%2C Best hit);ORF_evidence=Q851W1 (UniProt);GO=Biological Process: vesicle docking involved in exocytosis (GO:0006904),Biological Process: vesicle-mediated transport (GO:0016192);InterPro=Sec1-like protein (IPR001619);NIAS_FLcDNA=J023097B21;Expression=AK071474;TENOR=Os03t0620800-01;KEGG=Os03t0620800-01
Chr03	irgsp1_rep	five_prime_UTR	23547582	23547647	.	-	.	Parent=Os03t0620800-01
Chr03	irgsp1_rep	CDS	23547551	23547581	.	-	0	Parent=Os03t0620800-01
Chr03	irgsp1_rep	CDS	23545615	23547455	.	-	2	Parent=Os03t0620800-01
Chr03	irgsp1_rep	three_prime_UTR	23545490	23545614	.	-	.	Parent=Os03t0620800-01
Chr03	irgsp1_rep	mRNA	23545428	23547015	.	-	.	ID=Os03t0620800-02;Name=Os03t0620800-02;Locus_id=Os03g0620800;Note=Similar to SEC1 family transport protein SLY1.;Transcript_evidence=AK072419 (DDBJ%2C Best hit);ORF_evidence=Q851W1 (UniProt);GO=Biological Process: vesicle docking involved in exocytosis (GO:0006904),Biological Process: vesicle-mediated transport (GO:0016192);InterPro=Sec1-like protein (IPR001619);NIAS_FLcDNA=J023083A08;Expression=AK072419;TENOR=Os03t0620800-02;KEGG=Os03t0620800-02
Chr03	irgsp1_rep	CDS	23545615	23547015	.	-	0	Parent=Os03t0620800-02
Chr03	irgsp1_rep	three_prime_UTR	23545428	23545614	.	-	.	Parent=Os03t0620800-02
Chr03	irgsp1_rep	mRNA	23552662	23552727	.	+	.	ID=Os03t0621201-00;Name=Os03t0621201-00;Locus_id=Os03g0621201;Note=Non-protein coding transcript.;Transcript_evidence=EU943375 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0621201-00
Chr03	irgsp1_rep	exon	23552662	23552727	.	+	.	Parent=Os03t0621201-00
Chr03	irgsp1_rep	mRNA	23556180	23562967	.	+	.	ID=Os03t0621400-01;Name=Os03t0621400-01;Locus_id=Os03g0621400;Note=Hypothetical conserved gene.;Transcript_evidence=AK241338 (DDBJ%2C Best hit);ORF_evidence=B8AML0 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J065146D10;TENOR=Os03t0621400-01;KEGG=Os03t0621400-01
Chr03	irgsp1_rep	five_prime_UTR	23556180	23556303	.	+	.	Parent=Os03t0621400-01
Chr03	irgsp1_rep	CDS	23556304	23556340	.	+	0	Parent=Os03t0621400-01
Chr03	irgsp1_rep	CDS	23556428	23556496	.	+	2	Parent=Os03t0621400-01
Chr03	irgsp1_rep	CDS	23556669	23556857	.	+	2	Parent=Os03t0621400-01
Chr03	irgsp1_rep	CDS	23557884	23558015	.	+	2	Parent=Os03t0621400-01
Chr03	irgsp1_rep	CDS	23558932	23559071	.	+	2	Parent=Os03t0621400-01
Chr03	irgsp1_rep	CDS	23559602	23559685	.	+	0	Parent=Os03t0621400-01
Chr03	irgsp1_rep	CDS	23560041	23560181	.	+	0	Parent=Os03t0621400-01
Chr03	irgsp1_rep	CDS	23561248	23561349	.	+	0	Parent=Os03t0621400-01
Chr03	irgsp1_rep	CDS	23561672	23561842	.	+	0	Parent=Os03t0621400-01
Chr03	irgsp1_rep	CDS	23561921	23562000	.	+	0	Parent=Os03t0621400-01
Chr03	irgsp1_rep	CDS	23562442	23562490	.	+	1	Parent=Os03t0621400-01
Chr03	irgsp1_rep	three_prime_UTR	23562491	23562967	.	+	.	Parent=Os03t0621400-01
Chr03	irgsp1_rep	mRNA	23568423	23572574	.	+	.	ID=Os03t0621600-00;Name=Os03t0621600-00;Locus_id=Os03g0621600;CGSNL Gene Symbol=DLN94;CGSNL Gene Name=DLN REPRESSOR 94;Oryzabase Gene Symbol Synonym(s)=OsDLN94;Oryzabase Gene Name Synonym(s)=DLN repressor 94%2C DLN motif protein 94;Note=Transcriptional factor B3 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9F9R4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);Oryzabase=23186;TENOR=Os03t0621600-00
Chr03	irgsp1_rep	CDS	23568423	23568530	.	+	0	Parent=Os03t0621600-00
Chr03	irgsp1_rep	CDS	23569071	23569491	.	+	0	Parent=Os03t0621600-00
Chr03	irgsp1_rep	CDS	23569564	23569718	.	+	2	Parent=Os03t0621600-00
Chr03	irgsp1_rep	CDS	23569894	23570058	.	+	0	Parent=Os03t0621600-00
Chr03	irgsp1_rep	CDS	23570765	23570859	.	+	0	Parent=Os03t0621600-00
Chr03	irgsp1_rep	CDS	23571366	23571468	.	+	1	Parent=Os03t0621600-00
Chr03	irgsp1_rep	CDS	23571855	23572287	.	+	0	Parent=Os03t0621600-00
Chr03	irgsp1_rep	CDS	23572411	23572574	.	+	2	Parent=Os03t0621600-00
Chr03	irgsp1_rep	mRNA	23575277	23577245	.	+	.	ID=Os03t0621650-00;Name=Os03t0621650-00;Locus_id=Os03g0621650;Note=Transcriptional factor B3 domain containing protein.;Transcript_evidence=EU972562 (DDBJ);ORF_evidence=Q851V5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);TENOR=Os03t0621650-00
Chr03	irgsp1_rep	CDS	23575277	23575408	.	+	0	Parent=Os03t0621650-00
Chr03	irgsp1_rep	CDS	23576028	23576384	.	+	0	Parent=Os03t0621650-00
Chr03	irgsp1_rep	CDS	23576549	23576557	.	+	0	Parent=Os03t0621650-00
Chr03	irgsp1_rep	three_prime_UTR	23576558	23576752	.	+	.	Parent=Os03t0621650-00
Chr03	irgsp1_rep	three_prime_UTR	23576979	23577245	.	+	.	Parent=Os03t0621650-00
Chr03	irgsp1_rep	mRNA	23577786	23590444	.	-	.	ID=Os03t0621700-01;Name=Os03t0621700-01;Locus_id=Os03g0621700;Note=Conserved hypothetical protein.;Transcript_evidence=AK109821 (DDBJ%2C Best hit);ORF_evidence=Q7XID9 (UniProt);NIAS_FLcDNA=002-148-A08;TENOR=Os03t0621700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	23589902	23590444	.	-	.	Parent=Os03t0621700-01
Chr03	irgsp1_rep	five_prime_UTR	23589404	23589463	.	-	.	Parent=Os03t0621700-01
Chr03	irgsp1_rep	five_prime_UTR	23588554	23588650	.	-	.	Parent=Os03t0621700-01
Chr03	irgsp1_rep	five_prime_UTR	23588445	23588480	.	-	.	Parent=Os03t0621700-01
Chr03	irgsp1_rep	CDS	23588399	23588444	.	-	0	Parent=Os03t0621700-01
Chr03	irgsp1_rep	CDS	23588106	23588305	.	-	2	Parent=Os03t0621700-01
Chr03	irgsp1_rep	three_prime_UTR	23587787	23588105	.	-	.	Parent=Os03t0621700-01
Chr03	irgsp1_rep	three_prime_UTR	23587585	23587671	.	-	.	Parent=Os03t0621700-01
Chr03	irgsp1_rep	three_prime_UTR	23577786	23578239	.	-	.	Parent=Os03t0621700-01
Chr03	irgsp1_rep	mRNA	23592134	23597431	.	+	.	ID=Os03t0621900-00;Name=Os03t0621900-00;Locus_id=Os03g0621900;Note=Transcriptional factor B3 domain containing protein.;Transcript_evidence=EU972562 (DDBJ);ORF_evidence=B9F9R6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);TENOR=Os03t0621900-00
Chr03	irgsp1_rep	CDS	23592134	23592256	.	+	0	Parent=Os03t0621900-00
Chr03	irgsp1_rep	CDS	23596186	23596454	.	+	0	Parent=Os03t0621900-00
Chr03	irgsp1_rep	CDS	23596507	23596546	.	+	1	Parent=Os03t0621900-00
Chr03	irgsp1_rep	three_prime_UTR	23596547	23596831	.	+	.	Parent=Os03t0621900-00
Chr03	irgsp1_rep	three_prime_UTR	23597184	23597431	.	+	.	Parent=Os03t0621900-00
Chr03	irgsp1_rep	mRNA	23609771	23611883	.	+	.	ID=Os03t0622100-01;Name=Os03t0622100-01;Locus_id=Os03g0622100;Note=Transcriptional factor B3 family protein.;Transcript_evidence=AK063506 (DDBJ%2C Best hit);ORF_evidence=Q10GM4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=001-116-F06;Expression=AK063506;TENOR=Os03t0622100-01;KEGG=Os03t0622100-01
Chr03	irgsp1_rep	five_prime_UTR	23609771	23609786	.	+	.	Parent=Os03t0622100-01
Chr03	irgsp1_rep	CDS	23609787	23609918	.	+	0	Parent=Os03t0622100-01
Chr03	irgsp1_rep	CDS	23610111	23610552	.	+	0	Parent=Os03t0622100-01
Chr03	irgsp1_rep	CDS	23610982	23611235	.	+	2	Parent=Os03t0622100-01
Chr03	irgsp1_rep	CDS	23611319	23611639	.	+	0	Parent=Os03t0622100-01
Chr03	irgsp1_rep	three_prime_UTR	23611640	23611883	.	+	.	Parent=Os03t0622100-01
Chr03	irgsp1_rep	mRNA	23613955	23616375	.	+	.	ID=Os03t0622200-01;Name=Os03t0622200-01;Locus_id=Os03g0622200;Note=Transcriptional factor B3 family protein.;Transcript_evidence=AK108660 (DDBJ%2C Best hit);ORF_evidence=Q10GM3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=002-148-F01;Expression=AK108660;TENOR=Os03t0622200-01;KEGG=Os03t0622200-01
Chr03	irgsp1_rep	five_prime_UTR	23613955	23614023	.	+	.	Parent=Os03t0622200-01
Chr03	irgsp1_rep	CDS	23614024	23614155	.	+	0	Parent=Os03t0622200-01
Chr03	irgsp1_rep	CDS	23614619	23615078	.	+	0	Parent=Os03t0622200-01
Chr03	irgsp1_rep	CDS	23615396	23615622	.	+	2	Parent=Os03t0622200-01
Chr03	irgsp1_rep	CDS	23615795	23616112	.	+	0	Parent=Os03t0622200-01
Chr03	irgsp1_rep	three_prime_UTR	23616113	23616375	.	+	.	Parent=Os03t0622200-01
Chr03	irgsp1_rep	mRNA	23616665	23620252	.	-	.	ID=Os03t0622300-01;Name=Os03t0622300-01;Locus_id=Os03g0622300;Note=Conserved hypothetical protein.;Transcript_evidence=AK107931 (DDBJ%2C Best hit);ORF_evidence=NP_001050686.1 (RefSeq);NIAS_FLcDNA=002-135-A02;Expression=AK107931;TENOR=Os03t0622300-01;KEGG=Os03t0622300-01
Chr03	irgsp1_rep	five_prime_UTR	23620228	23620252	.	-	.	Parent=Os03t0622300-01
Chr03	irgsp1_rep	CDS	23620076	23620227	.	-	0	Parent=Os03t0622300-01
Chr03	irgsp1_rep	CDS	23619878	23619981	.	-	1	Parent=Os03t0622300-01
Chr03	irgsp1_rep	CDS	23617755	23617774	.	-	2	Parent=Os03t0622300-01
Chr03	irgsp1_rep	three_prime_UTR	23617723	23617754	.	-	.	Parent=Os03t0622300-01
Chr03	irgsp1_rep	three_prime_UTR	23616665	23616972	.	-	.	Parent=Os03t0622300-01
Chr03	irgsp1_rep	mRNA	23614512	23616689	.	-	.	ID=Os03t0622300-02;Name=Os03t0622300-02;Locus_id=Os03g0622300;Note=Hypothetical gene.;Transcript_evidence=AK109729 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-146-B11;Expression=AK109729;TENOR=Os03t0622300-02;KEGG=Os03t0622300-02
Chr03	irgsp1_rep	five_prime_UTR	23616322	23616689	.	-	.	Parent=Os03t0622300-02
Chr03	irgsp1_rep	five_prime_UTR	23616071	23616246	.	-	.	Parent=Os03t0622300-02
Chr03	irgsp1_rep	CDS	23615636	23616070	.	-	0	Parent=Os03t0622300-02
Chr03	irgsp1_rep	CDS	23614744	23615025	.	-	0	Parent=Os03t0622300-02
Chr03	irgsp1_rep	three_prime_UTR	23614512	23614743	.	-	.	Parent=Os03t0622300-02
Chr03	irgsp1_rep	mRNA	23624215	23630665	.	-	.	ID=Os03t0622500-01;Name=Os03t0622500-01;Locus_id=Os03g0622500;Note=Conserved hypothetical protein.;Transcript_evidence=AK073006 (DDBJ%2C Best hit);ORF_evidence=Q10GM0 (UniProt);NIAS_FLcDNA=J023147K22;TENOR=Os03t0622500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	23630630	23630665	.	-	.	Parent=Os03t0622500-01
Chr03	irgsp1_rep	five_prime_UTR	23627814	23630489	.	-	.	Parent=Os03t0622500-01
Chr03	irgsp1_rep	five_prime_UTR	23627476	23627693	.	-	.	Parent=Os03t0622500-01
Chr03	irgsp1_rep	five_prime_UTR	23625050	23625108	.	-	.	Parent=Os03t0622500-01
Chr03	irgsp1_rep	five_prime_UTR	23624938	23624963	.	-	.	Parent=Os03t0622500-01
Chr03	irgsp1_rep	CDS	23624617	23624937	.	-	0	Parent=Os03t0622500-01
Chr03	irgsp1_rep	three_prime_UTR	23624457	23624616	.	-	.	Parent=Os03t0622500-01
Chr03	irgsp1_rep	three_prime_UTR	23624215	23624356	.	-	.	Parent=Os03t0622500-01
Chr03	irgsp1_rep	mRNA	23626768	23630664	.	-	.	ID=Os03t0622500-02;Name=Os03t0622500-02;Locus_id=Os03g0622500;Note=Hypothetical gene.;Transcript_evidence=AK100879 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023127D23;Expression=AK100879;TENOR=Os03t0622500-02;KEGG=Os03t0622500-02
Chr03	irgsp1_rep	five_prime_UTR	23628917	23630664	.	-	.	Parent=Os03t0622500-02
Chr03	irgsp1_rep	CDS	23628659	23628916	.	-	0	Parent=Os03t0622500-02
Chr03	irgsp1_rep	three_prime_UTR	23626768	23628658	.	-	.	Parent=Os03t0622500-02
Chr03	irgsp1_rep	mRNA	23633274	23640082	.	-	.	ID=Os03t0622600-01;Name=Os03t0622600-01;Locus_id=Os03g0622600;Note=Conserved hypothetical protein.;Transcript_evidence=AK109300 (DDBJ%2C Best hit);ORF_evidence=Q10GL8 (UniProt);NIAS_FLcDNA=002-188-D11;Expression=AK109300;TENOR=Os03t0622600-01;KEGG=Os03t0622600-01
Chr03	irgsp1_rep	five_prime_UTR	23640044	23640082	.	-	.	Parent=Os03t0622600-01
Chr03	irgsp1_rep	CDS	23639892	23640043	.	-	0	Parent=Os03t0622600-01
Chr03	irgsp1_rep	CDS	23639718	23639815	.	-	1	Parent=Os03t0622600-01
Chr03	irgsp1_rep	CDS	23633565	23633572	.	-	2	Parent=Os03t0622600-01
Chr03	irgsp1_rep	three_prime_UTR	23633274	23633564	.	-	.	Parent=Os03t0622600-01
Chr03	irgsp1_rep	mRNA	23636283	23638730	.	+	.	ID=Os03t0622700-00;Name=Os03t0622700-00;Locus_id=Os03g0622700;Note=Similar to Plastidic phosphate translocator-like protein1.;Transcript_evidence=EU956200 (DDBJ);ORF_evidence=NP_001159001.1 (RefSeq);TENOR=Os03t0622700-00;KEGG=Os03t0622700-00
Chr03	irgsp1_rep	CDS	23636283	23637355	.	+	0	Parent=Os03t0622700-00
Chr03	irgsp1_rep	CDS	23638382	23638730	.	+	1	Parent=Os03t0622700-00
Chr03	irgsp1_rep	mRNA	23655935	23657162	.	+	.	ID=Os03t0623100-01;Name=Os03t0623100-01;Locus_id=Os03g0623100;Oryzabase Gene Symbol Synonym(s)=OsEnS-49;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 49;Note=Conserved hypothetical protein.;Transcript_evidence=AK063716 (DDBJ%2C Best hit);ORF_evidence=Q75LF1 (UniProt);NIAS_FLcDNA=001-120-C05;Oryzabase=18375;Expression=AK063716;TENOR=Os03t0623100-01;KEGG=Os03t0623100-01
Chr03	irgsp1_rep	five_prime_UTR	23655935	23656000	.	+	.	Parent=Os03t0623100-01
Chr03	irgsp1_rep	CDS	23656001	23656399	.	+	0	Parent=Os03t0623100-01
Chr03	irgsp1_rep	CDS	23656833	23656994	.	+	0	Parent=Os03t0623100-01
Chr03	irgsp1_rep	three_prime_UTR	23656995	23657162	.	+	.	Parent=Os03t0623100-01
Chr03	irgsp1_rep	mRNA	23694318	23695622	.	+	.	ID=Os03t0624000-00;Name=Os03t0624000-00;Locus_id=Os03g0624000;Note=Similar to KANADI 3.;Transcript_evidence=EU965507 (DDBJ);ORF_evidence=XP_001769392.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778);TENOR=Os03t0624000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	23694318	23694501	.	+	.	Parent=Os03t0624000-00
Chr03	irgsp1_rep	CDS	23694502	23694916	.	+	0	Parent=Os03t0624000-00
Chr03	irgsp1_rep	CDS	23695489	23695622	.	+	2	Parent=Os03t0624000-00
Chr03	irgsp1_rep	mRNA	23715220	23715752	.	+	.	ID=Os03t0624300-01;Name=Os03t0624300-01;Locus_id=Os03g0624300;Note=Conserved hypothetical protein.;Transcript_evidence=AK062353 (DDBJ%2C Best hit);ORF_evidence=B8BJF0 (UniProt);NIAS_FLcDNA=001-101-G07;Expression=AK062353;TENOR=Os03t0624300-01;KEGG=Os03t0624300-01
Chr03	irgsp1_rep	CDS	23715220	23715537	.	+	0	Parent=Os03t0624300-01
Chr03	irgsp1_rep	three_prime_UTR	23715538	23715752	.	+	.	Parent=Os03t0624300-01
Chr03	irgsp1_rep	mRNA	23734580	23736562	.	+	.	ID=Os03t0624600-01;Name=Os03t0624600-01;Locus_id=Os03g0624600;Oryzabase Gene Symbol Synonym(s)=ONAC006%2C ONAC6%2C DLN95%2C OsDLN95;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 006%2C NAC domain-containing protein 6%2C DLN repressor 95%2C DLN motif protein 95;Note=No apical meristem (NAM) protein domain containing protein.;Transcript_evidence=AK062675 (DDBJ%2C Best hit);ORF_evidence=XP_002318549.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=001-105-G11;Oryzabase=11458;Expression=AK062675;TENOR=Os03t0624600-01;KEGG=Os03t0624600-01
Chr03	irgsp1_rep	five_prime_UTR	23734580	23734683	.	+	.	Parent=Os03t0624600-01
Chr03	irgsp1_rep	CDS	23734684	23734837	.	+	0	Parent=Os03t0624600-01
Chr03	irgsp1_rep	CDS	23735476	23736293	.	+	2	Parent=Os03t0624600-01
Chr03	irgsp1_rep	three_prime_UTR	23736294	23736562	.	+	.	Parent=Os03t0624600-01
Chr03	irgsp1_rep	mRNA	23734689	23735711	.	-	.	ID=Os03t0624700-00;Name=Os03t0624700-00;Locus_id=Os03g0624700;Note=Hypothetical protein.;Transcript_evidence=FP093663 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0624700-00
Chr03	irgsp1_rep	CDS	23735394	23735711	.	-	0	Parent=Os03t0624700-00
Chr03	irgsp1_rep	CDS	23734689	23734845	.	-	0	Parent=Os03t0624700-00
Chr03	irgsp1_rep	mRNA	23738885	23746139	.	+	.	ID=Os03t0624800-01;Name=Os03t0624800-01;Locus_id=Os03g0624800;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK100295 (DDBJ%2C Best hit);ORF_evidence=A2XJQ0 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J023076N22;Expression=AK100295;TENOR=Os03t0624800-01;KEGG=Os03t0624800-01
Chr03	irgsp1_rep	five_prime_UTR	23738885	23739338	.	+	.	Parent=Os03t0624800-01
Chr03	irgsp1_rep	five_prime_UTR	23740488	23740620	.	+	.	Parent=Os03t0624800-01
Chr03	irgsp1_rep	CDS	23740621	23741970	.	+	0	Parent=Os03t0624800-01
Chr03	irgsp1_rep	three_prime_UTR	23741971	23742257	.	+	.	Parent=Os03t0624800-01
Chr03	irgsp1_rep	three_prime_UTR	23743105	23743371	.	+	.	Parent=Os03t0624800-01
Chr03	irgsp1_rep	three_prime_UTR	23744984	23745098	.	+	.	Parent=Os03t0624800-01
Chr03	irgsp1_rep	three_prime_UTR	23745632	23746139	.	+	.	Parent=Os03t0624800-01
Chr03	irgsp1_rep	mRNA	23754702	23755198	.	+	.	ID=Os03t0624900-00;Name=Os03t0624900-00;Locus_id=Os03g0624900;Note=Hypothetical conserved gene.;Transcript_evidence=FP098075 (DDBJ);ORF_evidence=Q75LG5 (UniProt);TENOR=Os03t0624900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	23754702	23754703	.	+	.	Parent=Os03t0624900-00
Chr03	irgsp1_rep	CDS	23754704	23755198	.	+	0	Parent=Os03t0624900-00
Chr03	irgsp1_rep	mRNA	23781143	23782589	.	-	.	ID=Os03t0625201-00;Name=Os03t0625201-00;Locus_id=Os03g0625201;Note=Hypothetical gene.;Transcript_evidence=EU946604 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0625201-00;KEGG=Os03t0625201-00
Chr03	irgsp1_rep	five_prime_UTR	23782585	23782589	.	-	.	Parent=Os03t0625201-00
Chr03	irgsp1_rep	CDS	23782273	23782584	.	-	0	Parent=Os03t0625201-00
Chr03	irgsp1_rep	three_prime_UTR	23781365	23782272	.	-	.	Parent=Os03t0625201-00
Chr03	irgsp1_rep	three_prime_UTR	23781143	23781306	.	-	.	Parent=Os03t0625201-00
Chr03	irgsp1_rep	mRNA	23781012	23782726	.	+	.	ID=Os03t0625300-00;Name=Os03t0625300-00;Locus_id=Os03g0625300;Oryzabase Gene Symbol Synonym(s)=OsWD40-77;Note=Similar to nucleotide binding protein.;Transcript_evidence=AK374368 (DDBJ);ORF_evidence=NP_001147579.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);Oryzabase=10758;TENOR=Os03t0625300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	23781012	23781541	.	+	0	Parent=Os03t0625300-00
Chr03	irgsp1_rep	CDS	23781679	23782726	.	+	1	Parent=Os03t0625300-00
Chr03	irgsp1_rep	mRNA	23797158	23808349	.	-	.	ID=Os03t0625700-01;Name=Os03t0625700-01;Locus_id=Os03g0625700;RAP-DB Gene Symbol Synonym(s)=OsSEC3A;RAP-DB Gene Name Synonym(s)=subunit of the exocyst complex 3A;CGSNL Gene Symbol=SEC3A;CGSNL Gene Name=EXOCYST SUBUNIT SEC3A;Oryzabase Gene Symbol Synonym(s)=OsSEC3A;Oryzabase Gene Name Synonym(s)=exocyst subunit SEC3A;Note=Subunit of the exocyst complex%2C Defense response;Transcript_evidence=AY224571 (truncated),Inferred from literature;ORF_evidence=Q10GJ5;GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exocyst complex component Sec3%2C PIP2-binding N-terminal domain (IPR028258),Exocyst complex component Sec3%2C C-terminal (IPR019160);Manual Curation=January 15%2C 2018;Literature_PMID=29300985;Oryzabase=22235;Expression=AY224571;TENOR=Os03t0625700-00;KEGG=Os03t0625700-00;Subcellular location=plasma membrane (GO:0005886)
Chr03	irgsp1_rep	five_prime_UTR	23808240	23808349	.	-	.	Parent=Os03t0625700-01
Chr03	irgsp1_rep	CDS	23808068	23808239	.	-	0	Parent=Os03t0625700-01
Chr03	irgsp1_rep	CDS	23806373	23806449	.	-	2	Parent=Os03t0625700-01
Chr03	irgsp1_rep	CDS	23806116	23806196	.	-	0	Parent=Os03t0625700-01
Chr03	irgsp1_rep	CDS	23805948	23806015	.	-	0	Parent=Os03t0625700-01
Chr03	irgsp1_rep	CDS	23805592	23805694	.	-	1	Parent=Os03t0625700-01
Chr03	irgsp1_rep	CDS	23805185	23805342	.	-	0	Parent=Os03t0625700-01
Chr03	irgsp1_rep	CDS	23803715	23803832	.	-	1	Parent=Os03t0625700-01
Chr03	irgsp1_rep	CDS	23803441	23803545	.	-	0	Parent=Os03t0625700-01
Chr03	irgsp1_rep	CDS	23802942	23803043	.	-	0	Parent=Os03t0625700-01
Chr03	irgsp1_rep	CDS	23802728	23802865	.	-	0	Parent=Os03t0625700-01
Chr03	irgsp1_rep	CDS	23802264	23802392	.	-	0	Parent=Os03t0625700-01
Chr03	irgsp1_rep	CDS	23802090	23802170	.	-	0	Parent=Os03t0625700-01
Chr03	irgsp1_rep	CDS	23801931	23802005	.	-	0	Parent=Os03t0625700-01
Chr03	irgsp1_rep	CDS	23801505	23801678	.	-	0	Parent=Os03t0625700-01
Chr03	irgsp1_rep	CDS	23801275	23801419	.	-	0	Parent=Os03t0625700-01
Chr03	irgsp1_rep	CDS	23801104	23801168	.	-	2	Parent=Os03t0625700-01
Chr03	irgsp1_rep	CDS	23800779	23800949	.	-	0	Parent=Os03t0625700-01
Chr03	irgsp1_rep	CDS	23800596	23800675	.	-	0	Parent=Os03t0625700-01
Chr03	irgsp1_rep	CDS	23799772	23799853	.	-	1	Parent=Os03t0625700-01
Chr03	irgsp1_rep	CDS	23799568	23799665	.	-	0	Parent=Os03t0625700-01
Chr03	irgsp1_rep	CDS	23799323	23799431	.	-	1	Parent=Os03t0625700-01
Chr03	irgsp1_rep	CDS	23799176	23799244	.	-	0	Parent=Os03t0625700-01
Chr03	irgsp1_rep	CDS	23798303	23798368	.	-	0	Parent=Os03t0625700-01
Chr03	irgsp1_rep	CDS	23797828	23797917	.	-	0	Parent=Os03t0625700-01
Chr03	irgsp1_rep	CDS	23797459	23797569	.	-	0	Parent=Os03t0625700-01
Chr03	irgsp1_rep	three_prime_UTR	23797158	23797458	.	-	.	Parent=Os03t0625700-01
Chr03	irgsp1_rep	mRNA	23812565	23816582	.	+	.	ID=Os03t0625800-01;Name=Os03t0625800-01;Locus_id=Os03g0625800;Note=Zinc finger%2C C6HC-type domain containing protein.;Transcript_evidence=AK099619 (DDBJ%2C Best hit),AK066101 (DDBJ%2C Best hit);ORF_evidence=Q10GJ1 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C C6HC-type (IPR002867),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J013052P13,J013052O12;Expression=AK099619;TENOR=Os03t0625800-01;KEGG=Os03t0625800-01
Chr03	irgsp1_rep	five_prime_UTR	23812565	23812613	.	+	.	Parent=Os03t0625800-01
Chr03	irgsp1_rep	CDS	23812614	23812775	.	+	0	Parent=Os03t0625800-01
Chr03	irgsp1_rep	CDS	23813902	23813934	.	+	0	Parent=Os03t0625800-01
Chr03	irgsp1_rep	CDS	23814039	23814312	.	+	0	Parent=Os03t0625800-01
Chr03	irgsp1_rep	CDS	23814538	23815018	.	+	2	Parent=Os03t0625800-01
Chr03	irgsp1_rep	CDS	23815607	23816279	.	+	1	Parent=Os03t0625800-01
Chr03	irgsp1_rep	three_prime_UTR	23816280	23816582	.	+	.	Parent=Os03t0625800-01
Chr03	irgsp1_rep	mRNA	23817641	23824212	.	-	.	ID=Os03t0625900-01;Name=Os03t0625900-01;Locus_id=Os03g0625900;Oryzabase Gene Symbol Synonym(s)=OsWD40-78;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK101109 (DDBJ%2C Best hit);ORF_evidence=NP_192450.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J033025E11;Oryzabase=10759;Expression=AK101109;TENOR=Os03t0625900-01;KEGG=Os03t0625900-01
Chr03	irgsp1_rep	five_prime_UTR	23824061	23824212	.	-	.	Parent=Os03t0625900-01
Chr03	irgsp1_rep	CDS	23823633	23824060	.	-	0	Parent=Os03t0625900-01
Chr03	irgsp1_rep	CDS	23821590	23821926	.	-	1	Parent=Os03t0625900-01
Chr03	irgsp1_rep	CDS	23820489	23820713	.	-	0	Parent=Os03t0625900-01
Chr03	irgsp1_rep	CDS	23819887	23820097	.	-	0	Parent=Os03t0625900-01
Chr03	irgsp1_rep	CDS	23819485	23819657	.	-	2	Parent=Os03t0625900-01
Chr03	irgsp1_rep	CDS	23818822	23818887	.	-	0	Parent=Os03t0625900-01
Chr03	irgsp1_rep	CDS	23818098	23818193	.	-	0	Parent=Os03t0625900-01
Chr03	irgsp1_rep	three_prime_UTR	23817641	23818097	.	-	.	Parent=Os03t0625900-01
Chr03	irgsp1_rep	mRNA	23827633	23831445	.	+	.	ID=Os03t0625933-00;Name=Os03t0625933-00;Locus_id=Os03g0625933;Note=Similar to IBR domain containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10GJ1 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C C6HC-type (IPR002867),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);TENOR=Os03t0625933-00
Chr03	irgsp1_rep	CDS	23827633	23827779	.	+	0	Parent=Os03t0625933-00
Chr03	irgsp1_rep	CDS	23829610	23829642	.	+	0	Parent=Os03t0625933-00
Chr03	irgsp1_rep	CDS	23829780	23830098	.	+	0	Parent=Os03t0625933-00
Chr03	irgsp1_rep	CDS	23830955	23831445	.	+	2	Parent=Os03t0625933-00
Chr03	irgsp1_rep	mRNA	23831005	23832562	.	-	.	ID=Os03t0625966-00;Name=Os03t0625966-00;Locus_id=Os03g0625966;Note=Hypothetical protein.;Transcript_evidence=EU972919 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0625966-00
Chr03	irgsp1_rep	five_prime_UTR	23832561	23832562	.	-	.	Parent=Os03t0625966-00
Chr03	irgsp1_rep	CDS	23832034	23832560	.	-	0	Parent=Os03t0625966-00
Chr03	irgsp1_rep	CDS	23831438	23831438	.	-	1	Parent=Os03t0625966-00
Chr03	irgsp1_rep	three_prime_UTR	23831005	23831437	.	-	.	Parent=Os03t0625966-00
Chr03	irgsp1_rep	mRNA	23831912	23832694	.	+	.	ID=Os03t0626000-01;Name=Os03t0626000-01;Locus_id=Os03g0626000;Note=Similar to IBR domain containing protein%2C expressed.;Transcript_evidence=AK287719 (DDBJ%2C Best hit);ORF_evidence=Q10GJ1 (UniProt);NIAS_FLcDNA=J065135M17;TENOR=Os03t0626000-01
Chr03	irgsp1_rep	five_prime_UTR	23831912	23832023	.	+	.	Parent=Os03t0626000-01
Chr03	irgsp1_rep	CDS	23832024	23832694	.	+	0	Parent=Os03t0626000-01
Chr03	irgsp1_rep	mRNA	23836063	23839587	.	+	.	ID=Os03t0626100-01;Name=Os03t0626100-01;Locus_id=Os03g0626100;Note=Zinc finger%2C C6HC-type domain containing protein.;Transcript_evidence=AK119864 (DDBJ%2C Best hit);ORF_evidence=Q10GJ1 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C C6HC-type (IPR002867),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=002-179-A03;Expression=AK119864;TENOR=Os03t0626100-01;KEGG=Os03t0626100-01
Chr03	irgsp1_rep	five_prime_UTR	23836063	23836107	.	+	.	Parent=Os03t0626100-01
Chr03	irgsp1_rep	CDS	23836108	23836278	.	+	0	Parent=Os03t0626100-01
Chr03	irgsp1_rep	CDS	23837079	23837111	.	+	0	Parent=Os03t0626100-01
Chr03	irgsp1_rep	CDS	23837227	23837536	.	+	0	Parent=Os03t0626100-01
Chr03	irgsp1_rep	CDS	23838084	23838579	.	+	2	Parent=Os03t0626100-01
Chr03	irgsp1_rep	CDS	23838648	23839350	.	+	1	Parent=Os03t0626100-01
Chr03	irgsp1_rep	three_prime_UTR	23839351	23839587	.	+	.	Parent=Os03t0626100-01
Chr03	irgsp1_rep	mRNA	23841765	23844369	.	+	.	ID=Os03t0626200-01;Name=Os03t0626200-01;Locus_id=Os03g0626200;Note=Conserved hypothetical protein.;Transcript_evidence=AK241997 (DDBJ%2C Best hit);ORF_evidence=B9F9T3 (UniProt);NIAS_FLcDNA=J075100A11;TENOR=Os03t0626200-01;KEGG=Os03t0626200-01
Chr03	irgsp1_rep	five_prime_UTR	23841765	23841856	.	+	.	Parent=Os03t0626200-01
Chr03	irgsp1_rep	CDS	23841857	23842027	.	+	0	Parent=Os03t0626200-01
Chr03	irgsp1_rep	three_prime_UTR	23842028	23842055	.	+	.	Parent=Os03t0626200-01
Chr03	irgsp1_rep	three_prime_UTR	23844147	23844369	.	+	.	Parent=Os03t0626200-01
Chr03	irgsp1_rep	mRNA	23848139	23848671	.	+	.	ID=Os03t0626400-01;Name=Os03t0626400-01;Locus_id=Os03g0626400;Note=Hypothetical conserved gene.;Transcript_evidence=AK062861 (DDBJ%2C Best hit);ORF_evidence=B9F9T4 (UniProt);NIAS_FLcDNA=001-108-B02;Expression=AK062861;TENOR=Os03t0626400-01;KEGG=Os03t0626400-01
Chr03	irgsp1_rep	five_prime_UTR	23848139	23848175	.	+	.	Parent=Os03t0626400-01
Chr03	irgsp1_rep	CDS	23848176	23848334	.	+	0	Parent=Os03t0626400-01
Chr03	irgsp1_rep	three_prime_UTR	23848335	23848671	.	+	.	Parent=Os03t0626400-01
Chr03	irgsp1_rep	mRNA	23850245	23851996	.	+	.	ID=Os03t0626500-00;Name=Os03t0626500-00;Locus_id=Os03g0626500;Note=Similar to predicted protein.;Transcript_evidence=BT054761 (DDBJ);ORF_evidence=XP_002894051.1 (RefSeq);GO=Molecular Function: inositol or phosphatidylinositol phosphatase activity (GO:0004437);InterPro=Inositol polyphosphate-related phosphatase (IPR000300),Endonuclease/exonuclease/phosphatase (IPR005135);TENOR=Os03t0626500-00;KEGG=Os03t0626500-00 (EC:3.1.3.36)
Chr03	irgsp1_rep	CDS	23850245	23850370	.	+	0	Parent=Os03t0626500-00
Chr03	irgsp1_rep	CDS	23850452	23850582	.	+	0	Parent=Os03t0626500-00
Chr03	irgsp1_rep	CDS	23850672	23850748	.	+	1	Parent=Os03t0626500-00
Chr03	irgsp1_rep	CDS	23850872	23850997	.	+	2	Parent=Os03t0626500-00
Chr03	irgsp1_rep	CDS	23851313	23851500	.	+	2	Parent=Os03t0626500-00
Chr03	irgsp1_rep	CDS	23851573	23851710	.	+	0	Parent=Os03t0626500-00
Chr03	irgsp1_rep	CDS	23851818	23851982	.	+	0	Parent=Os03t0626500-00
Chr03	irgsp1_rep	three_prime_UTR	23851983	23851996	.	+	.	Parent=Os03t0626500-00
Chr03	irgsp1_rep	mRNA	23855253	23861941	.	+	.	ID=Os03t0626600-01;Name=Os03t0626600-01;Locus_id=Os03g0626600;Note=Zinc finger%2C LIM-type domain containing protein.;Transcript_evidence=AK066665 (DDBJ%2C Best hit);ORF_evidence=B6SPK3 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C LIM-type (IPR001781),Ubiquitin interacting motif (IPR003903),Protein of unknown function DUF3633 (IPR022087);NIAS_FLcDNA=J013073O11;Expression=AK066665;TENOR=Os03t0626600-01;KEGG=Os03t0626600-01
Chr03	irgsp1_rep	five_prime_UTR	23855253	23855329	.	+	.	Parent=Os03t0626600-01
Chr03	irgsp1_rep	five_prime_UTR	23855503	23855597	.	+	.	Parent=Os03t0626600-01
Chr03	irgsp1_rep	five_prime_UTR	23855989	23856028	.	+	.	Parent=Os03t0626600-01
Chr03	irgsp1_rep	five_prime_UTR	23857037	23857070	.	+	.	Parent=Os03t0626600-01
Chr03	irgsp1_rep	CDS	23857071	23857178	.	+	0	Parent=Os03t0626600-01
Chr03	irgsp1_rep	CDS	23857527	23857611	.	+	0	Parent=Os03t0626600-01
Chr03	irgsp1_rep	CDS	23857813	23857984	.	+	2	Parent=Os03t0626600-01
Chr03	irgsp1_rep	CDS	23859489	23859609	.	+	1	Parent=Os03t0626600-01
Chr03	irgsp1_rep	CDS	23859688	23859771	.	+	0	Parent=Os03t0626600-01
Chr03	irgsp1_rep	CDS	23859864	23859983	.	+	0	Parent=Os03t0626600-01
Chr03	irgsp1_rep	CDS	23860294	23860506	.	+	0	Parent=Os03t0626600-01
Chr03	irgsp1_rep	CDS	23860587	23860646	.	+	0	Parent=Os03t0626600-01
Chr03	irgsp1_rep	CDS	23860739	23860857	.	+	0	Parent=Os03t0626600-01
Chr03	irgsp1_rep	CDS	23861042	23861100	.	+	1	Parent=Os03t0626600-01
Chr03	irgsp1_rep	CDS	23861231	23861565	.	+	2	Parent=Os03t0626600-01
Chr03	irgsp1_rep	three_prime_UTR	23861566	23861941	.	+	.	Parent=Os03t0626600-01
Chr03	irgsp1_rep	mRNA	23857014	23861568	.	-	.	ID=Os03t0626650-00;Name=Os03t0626650-00;Locus_id=Os03g0626650;Note=Non-protein coding transcript.;Transcript_evidence=tplb0034a09 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os03t0626650-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	exon	23861236	23861568	.	-	.	Parent=Os03t0626650-00
Chr03	irgsp1_rep	exon	23861036	23861103	.	-	.	Parent=Os03t0626650-00
Chr03	irgsp1_rep	exon	23860743	23860849	.	-	.	Parent=Os03t0626650-00
Chr03	irgsp1_rep	exon	23860591	23860644	.	-	.	Parent=Os03t0626650-00
Chr03	irgsp1_rep	exon	23860292	23860504	.	-	.	Parent=Os03t0626650-00
Chr03	irgsp1_rep	exon	23859851	23859981	.	-	.	Parent=Os03t0626650-00
Chr03	irgsp1_rep	exon	23859640	23859758	.	-	.	Parent=Os03t0626650-00
Chr03	irgsp1_rep	exon	23859482	23859580	.	-	.	Parent=Os03t0626650-00
Chr03	irgsp1_rep	exon	23857811	23857974	.	-	.	Parent=Os03t0626650-00
Chr03	irgsp1_rep	exon	23857014	23857605	.	-	.	Parent=Os03t0626650-00
Chr03	irgsp1_rep	mRNA	23870233	23876307	.	-	.	ID=Os03t0626700-01;Name=Os03t0626700-01;Locus_id=Os03g0626700;Note=Multi antimicrobial extrusion protein MatE family protein.;Transcript_evidence=AK068484 (DDBJ%2C Best hit);ORF_evidence=NP_001152524.1 (RefSeq);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);NIAS_FLcDNA=J013153I24;Oryzabase=22767;Expression=AK068484;TENOR=Os03t0626700-01;KEGG=Os03t0626700-01
Chr03	irgsp1_rep	five_prime_UTR	23876125	23876307	.	-	.	Parent=Os03t0626700-01
Chr03	irgsp1_rep	CDS	23875927	23876124	.	-	0	Parent=Os03t0626700-01
Chr03	irgsp1_rep	CDS	23872580	23873121	.	-	0	Parent=Os03t0626700-01
Chr03	irgsp1_rep	CDS	23872067	23872153	.	-	1	Parent=Os03t0626700-01
Chr03	irgsp1_rep	CDS	23871906	23871962	.	-	1	Parent=Os03t0626700-01
Chr03	irgsp1_rep	CDS	23871272	23871510	.	-	1	Parent=Os03t0626700-01
Chr03	irgsp1_rep	CDS	23870975	23871093	.	-	2	Parent=Os03t0626700-01
Chr03	irgsp1_rep	CDS	23870776	23870862	.	-	0	Parent=Os03t0626700-01
Chr03	irgsp1_rep	CDS	23870530	23870634	.	-	0	Parent=Os03t0626700-01
Chr03	irgsp1_rep	three_prime_UTR	23870233	23870529	.	-	.	Parent=Os03t0626700-01
Chr03	irgsp1_rep	mRNA	23872581	23873199	.	+	.	ID=Os03t0626750-00;Name=Os03t0626750-00;Locus_id=Os03g0626750;Note=Hypothetical protein.;Transcript_evidence=FP100340 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0626750-00
Chr03	irgsp1_rep	five_prime_UTR	23872581	23872581	.	+	.	Parent=Os03t0626750-00
Chr03	irgsp1_rep	CDS	23872582	23873034	.	+	0	Parent=Os03t0626750-00
Chr03	irgsp1_rep	three_prime_UTR	23873035	23873199	.	+	.	Parent=Os03t0626750-00
Chr03	irgsp1_rep	mRNA	23888738	23895468	.	+	.	ID=Os03t0626800-01;Name=Os03t0626800-01;Locus_id=Os03g0626800;CGSNL Gene Symbol=CBL3;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsCBL3;Oryzabase Gene Name Synonym(s)=Calcineurin B-like protein 3;Note=Calcineurin B protein.;Transcript_evidence=AK112092 (DDBJ%2C Best hit);ORF_evidence=Q75LU8 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Recoverin (IPR001125),Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-HAND 2 (IPR018249);NIAS_FLcDNA=002-107-B01;Oryzabase=6100;Expression=AK112092;TENOR=Os03t0626800-01;KEGG=Os03t0626800-01
Chr03	irgsp1_rep	five_prime_UTR	23888738	23889096	.	+	.	Parent=Os03t0626800-01
Chr03	irgsp1_rep	CDS	23889097	23889217	.	+	0	Parent=Os03t0626800-01
Chr03	irgsp1_rep	CDS	23889363	23889445	.	+	2	Parent=Os03t0626800-01
Chr03	irgsp1_rep	CDS	23889571	23889630	.	+	0	Parent=Os03t0626800-01
Chr03	irgsp1_rep	CDS	23889889	23889997	.	+	0	Parent=Os03t0626800-01
Chr03	irgsp1_rep	CDS	23891028	23891080	.	+	2	Parent=Os03t0626800-01
Chr03	irgsp1_rep	CDS	23892381	23892461	.	+	0	Parent=Os03t0626800-01
Chr03	irgsp1_rep	CDS	23893396	23893508	.	+	0	Parent=Os03t0626800-01
Chr03	irgsp1_rep	CDS	23894956	23895013	.	+	1	Parent=Os03t0626800-01
Chr03	irgsp1_rep	three_prime_UTR	23895014	23895468	.	+	.	Parent=Os03t0626800-01
Chr03	irgsp1_rep	mRNA	23888820	23895449	.	+	.	ID=Os03t0626800-02;Name=Os03t0626800-02;Locus_id=Os03g0626800;CGSNL Gene Symbol=CBL3;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsCBL3;Oryzabase Gene Name Synonym(s)=Calcineurin B-like protein 3;Note=Calcineurin B protein.;Transcript_evidence=AK111916 (DDBJ%2C Best hit);ORF_evidence=Q75LU8 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Recoverin (IPR001125),Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J033133I20;Oryzabase=6100;Expression=AK111916;TENOR=Os03t0626800-02;KEGG=Os03t0626800-02
Chr03	irgsp1_rep	five_prime_UTR	23888820	23889096	.	+	.	Parent=Os03t0626800-02
Chr03	irgsp1_rep	CDS	23889097	23889217	.	+	0	Parent=Os03t0626800-02
Chr03	irgsp1_rep	CDS	23889363	23889445	.	+	2	Parent=Os03t0626800-02
Chr03	irgsp1_rep	CDS	23889571	23889630	.	+	0	Parent=Os03t0626800-02
Chr03	irgsp1_rep	CDS	23889889	23889997	.	+	0	Parent=Os03t0626800-02
Chr03	irgsp1_rep	CDS	23891028	23891080	.	+	2	Parent=Os03t0626800-02
Chr03	irgsp1_rep	CDS	23892381	23892461	.	+	0	Parent=Os03t0626800-02
Chr03	irgsp1_rep	CDS	23893396	23893508	.	+	0	Parent=Os03t0626800-02
Chr03	irgsp1_rep	CDS	23894956	23895013	.	+	1	Parent=Os03t0626800-02
Chr03	irgsp1_rep	three_prime_UTR	23895014	23895449	.	+	.	Parent=Os03t0626800-02
Chr03	irgsp1_rep	mRNA	23889014	23895370	.	-	.	ID=Os03t0626900-00;Name=Os03t0626900-00;Locus_id=Os03g0626900;Note=Non-protein coding transcript.;Transcript_evidence=BT018557 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0626900-00
Chr03	irgsp1_rep	exon	23894948	23895370	.	-	.	Parent=Os03t0626900-00
Chr03	irgsp1_rep	exon	23893393	23893503	.	-	.	Parent=Os03t0626900-00
Chr03	irgsp1_rep	exon	23892327	23892458	.	-	.	Parent=Os03t0626900-00
Chr03	irgsp1_rep	exon	23889839	23889995	.	-	.	Parent=Os03t0626900-00
Chr03	irgsp1_rep	exon	23889363	23889454	.	-	.	Parent=Os03t0626900-00
Chr03	irgsp1_rep	exon	23889014	23889217	.	-	.	Parent=Os03t0626900-00
Chr03	irgsp1_rep	mRNA	23900148	23900959	.	-	.	ID=Os03t0627100-00;Name=Os03t0627100-00;Locus_id=Os03g0627100;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK374516 (DDBJ);ORF_evidence=NP_001174568.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os03t0627100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	23900562	23900959	.	-	.	Parent=Os03t0627100-00
Chr03	irgsp1_rep	CDS	23900148	23900561	.	-	0	Parent=Os03t0627100-00
Chr03	irgsp1_rep	mRNA	23907657	23913207	.	+	.	ID=Os03t0627300-01;Name=Os03t0627300-01;Locus_id=Os03g0627300;CGSNL Gene Symbol=ISC37;CGSNL Gene Name=IRON-SULFUR CLUSTER PROTEIN 37;Oryzabase Gene Symbol Synonym(s)=OsISC37;Oryzabase Gene Name Synonym(s)=Iron-sulfur cluster protein 37;Note=Similar to nucleotide-binding protein-like.;Transcript_evidence=AK106686 (DDBJ%2C Best hit);ORF_evidence=NP_001150831.1 (RefSeq);InterPro=Cobyrinic acid a%2Cc-diamide synthase (IPR002586);NIAS_FLcDNA=002-114-C02;Oryzabase=13439;TENOR=Os03t0627300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	23907657	23907837	.	+	.	Parent=Os03t0627300-01
Chr03	irgsp1_rep	CDS	23907838	23907903	.	+	0	Parent=Os03t0627300-01
Chr03	irgsp1_rep	CDS	23908049	23908172	.	+	0	Parent=Os03t0627300-01
Chr03	irgsp1_rep	CDS	23908514	23908636	.	+	2	Parent=Os03t0627300-01
Chr03	irgsp1_rep	CDS	23910156	23910307	.	+	2	Parent=Os03t0627300-01
Chr03	irgsp1_rep	three_prime_UTR	23910308	23911337	.	+	.	Parent=Os03t0627300-01
Chr03	irgsp1_rep	three_prime_UTR	23911418	23911503	.	+	.	Parent=Os03t0627300-01
Chr03	irgsp1_rep	three_prime_UTR	23911669	23911794	.	+	.	Parent=Os03t0627300-01
Chr03	irgsp1_rep	three_prime_UTR	23912749	23913207	.	+	.	Parent=Os03t0627300-01
Chr03	irgsp1_rep	mRNA	23925619	23934166	.	+	.	ID=Os03t0627500-01;Name=Os03t0627500-01;Locus_id=Os03g0627500;Note=Similar to KH domain containing protein%2C expressed.;Transcript_evidence=AK067707 (DDBJ%2C Best hit);ORF_evidence=Q10GH7 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=K Homology (IPR004087),K Homology%2C type 1 (IPR004088),K Homology%2C type 1%2C subgroup (IPR018111);NIAS_FLcDNA=J013114H09;TENOR=Os03t0627500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	23925619	23925732	.	+	.	Parent=Os03t0627500-01
Chr03	irgsp1_rep	five_prime_UTR	23926385	23926389	.	+	.	Parent=Os03t0627500-01
Chr03	irgsp1_rep	CDS	23926390	23926851	.	+	0	Parent=Os03t0627500-01
Chr03	irgsp1_rep	CDS	23929449	23929695	.	+	0	Parent=Os03t0627500-01
Chr03	irgsp1_rep	CDS	23930505	23930653	.	+	2	Parent=Os03t0627500-01
Chr03	irgsp1_rep	CDS	23930746	23931030	.	+	0	Parent=Os03t0627500-01
Chr03	irgsp1_rep	CDS	23931128	23931322	.	+	0	Parent=Os03t0627500-01
Chr03	irgsp1_rep	CDS	23933684	23933878	.	+	0	Parent=Os03t0627500-01
Chr03	irgsp1_rep	three_prime_UTR	23933879	23934166	.	+	.	Parent=Os03t0627500-01
Chr03	irgsp1_rep	mRNA	23950274	23954477	.	+	.	ID=Os03t0627900-01;Name=Os03t0627900-01;Locus_id=Os03g0627900;Note=Similar to H0102C09.1 protein.;Transcript_evidence=AK289130 (DDBJ%2C Best hit);ORF_evidence=Q25AL5 (UniProt);InterPro=Chromo domain (IPR023780);NIAS_FLcDNA=J090098I23;TENOR=Os03t0627900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	23950274	23950491	.	+	.	Parent=Os03t0627900-01
Chr03	irgsp1_rep	CDS	23950492	23951181	.	+	0	Parent=Os03t0627900-01
Chr03	irgsp1_rep	three_prime_UTR	23951182	23954477	.	+	.	Parent=Os03t0627900-01
Chr03	irgsp1_rep	mRNA	23989148	23997520	.	+	.	ID=Os03t0628800-01;Name=Os03t0628800-01;Locus_id=Os03g0628800;Note=Similar to H1flk (Fragment).;Transcript_evidence=AK099948 (DDBJ%2C Best hit);ORF_evidence=Q7DM36 (UniProt);GO=Molecular Function: ATP binding (GO:0005524),Molecular Function: kinase activity (GO:0016301);InterPro=Zeta toxin domain (IPR010488);NIAS_FLcDNA=J013123D13;Expression=AK099948;TENOR=Os03t0628800-01;KEGG=Os03t0628800-01
Chr03	irgsp1_rep	five_prime_UTR	23989148	23989271	.	+	.	Parent=Os03t0628800-01
Chr03	irgsp1_rep	CDS	23989272	23989303	.	+	0	Parent=Os03t0628800-01
Chr03	irgsp1_rep	CDS	23989476	23989705	.	+	1	Parent=Os03t0628800-01
Chr03	irgsp1_rep	CDS	23990498	23990721	.	+	2	Parent=Os03t0628800-01
Chr03	irgsp1_rep	CDS	23991590	23991657	.	+	0	Parent=Os03t0628800-01
Chr03	irgsp1_rep	CDS	23994120	23994362	.	+	1	Parent=Os03t0628800-01
Chr03	irgsp1_rep	CDS	23994490	23994619	.	+	1	Parent=Os03t0628800-01
Chr03	irgsp1_rep	CDS	23996617	23997336	.	+	0	Parent=Os03t0628800-01
Chr03	irgsp1_rep	three_prime_UTR	23997337	23997520	.	+	.	Parent=Os03t0628800-01
Chr03	irgsp1_rep	mRNA	23998912	24003186	.	-	.	ID=Os03t0628900-01;Name=Os03t0628900-01;Locus_id=Os03g0628900;Note=Prefoldin domain containing protein.;Transcript_evidence=AK103619 (DDBJ%2C Best hit);ORF_evidence=NP_001105143.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Cellular Component: prefoldin complex (GO:0016272),Molecular Function: unfolded protein binding (GO:0051082),Molecular Function: chaperone binding (GO:0051087);InterPro=Prefoldin beta-like (IPR002777),Prefoldin (IPR009053),Prefoldin%2C subunit 4 (IPR016661);NIAS_FLcDNA=J033133L23;Expression=AK103619;TENOR=Os03t0628900-01;KEGG=Os03t0628900-01
Chr03	irgsp1_rep	five_prime_UTR	24003076	24003186	.	-	.	Parent=Os03t0628900-01
Chr03	irgsp1_rep	CDS	24003067	24003075	.	-	0	Parent=Os03t0628900-01
Chr03	irgsp1_rep	CDS	24002830	24002940	.	-	0	Parent=Os03t0628900-01
Chr03	irgsp1_rep	CDS	23999212	23999472	.	-	0	Parent=Os03t0628900-01
Chr03	irgsp1_rep	three_prime_UTR	23998912	23999211	.	-	.	Parent=Os03t0628900-01
Chr03	irgsp1_rep	mRNA	24018515	24019271	.	-	.	ID=Os03t0629450-00;Name=Os03t0629450-00;Locus_id=Os03g0629450;Oryzabase Gene Symbol Synonym(s)=OsFbox155%2C Os_F0503;Oryzabase Gene Name Synonym(s)=F-box protein 155;Note=Similar to F-box domain containing protein.;Transcript_evidence=FP099414 (DDBJ);ORF_evidence=Q53K61 (UniProt);Oryzabase=16944;TENOR=Os03t0629450-00
Chr03	irgsp1_rep	CDS	24018612	24019271	.	-	0	Parent=Os03t0629450-00
Chr03	irgsp1_rep	three_prime_UTR	24018515	24018611	.	-	.	Parent=Os03t0629450-00
Chr03	irgsp1_rep	mRNA	24046131	24047194	.	+	.	ID=Os03t0629800-01;Name=Os03t0629800-01;Locus_id=Os03g0629800;Note=Conserved hypothetical protein.;Transcript_evidence=AK071513 (DDBJ%2C Best hit);ORF_evidence=NP_001172123.1 (RefSeq);NIAS_FLcDNA=J023099E07;Oryzabase=22552;TENOR=Os03t0629800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	24046131	24046349	.	+	.	Parent=Os03t0629800-01
Chr03	irgsp1_rep	CDS	24046350	24046679	.	+	0	Parent=Os03t0629800-01
Chr03	irgsp1_rep	three_prime_UTR	24046680	24047194	.	+	.	Parent=Os03t0629800-01
Chr03	irgsp1_rep	mRNA	24049424	24053785	.	-	.	ID=Os03t0629900-01;Name=Os03t0629900-01;Locus_id=Os03g0629900;Note=Conserved hypothetical protein.;Transcript_evidence=AK120126 (DDBJ%2C Best hit);ORF_evidence=B8AN17 (UniProt);NIAS_FLcDNA=J013026E13;Expression=AK120126;TENOR=Os03t0629900-01;KEGG=Os03t0629900-01
Chr03	irgsp1_rep	five_prime_UTR	24053457	24053785	.	-	.	Parent=Os03t0629900-01
Chr03	irgsp1_rep	five_prime_UTR	24051572	24053347	.	-	.	Parent=Os03t0629900-01
Chr03	irgsp1_rep	CDS	24050825	24051571	.	-	0	Parent=Os03t0629900-01
Chr03	irgsp1_rep	three_prime_UTR	24049424	24050824	.	-	.	Parent=Os03t0629900-01
Chr03	irgsp1_rep	mRNA	24047948	24051451	.	-	.	ID=Os03t0629900-02;Name=Os03t0629900-02;Locus_id=Os03g0629900;Note=Conserved hypothetical protein.;Transcript_evidence=AK109858 (DDBJ%2C Best hit);ORF_evidence=Q10GF7 (UniProt);NIAS_FLcDNA=002-148-G09;TENOR=Os03t0629900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	24050825	24051451	.	-	0	Parent=Os03t0629900-02
Chr03	irgsp1_rep	three_prime_UTR	24050237	24050824	.	-	.	Parent=Os03t0629900-02
Chr03	irgsp1_rep	three_prime_UTR	24050046	24050158	.	-	.	Parent=Os03t0629900-02
Chr03	irgsp1_rep	three_prime_UTR	24049881	24049961	.	-	.	Parent=Os03t0629900-02
Chr03	irgsp1_rep	three_prime_UTR	24049444	24049592	.	-	.	Parent=Os03t0629900-02
Chr03	irgsp1_rep	three_prime_UTR	24047948	24048770	.	-	.	Parent=Os03t0629900-02
Chr03	irgsp1_rep	mRNA	24155727	24157253	.	+	.	ID=Os03t0632200-00;Name=Os03t0632200-00;Locus_id=Os03g0632200;Note=Similar to F-box domain containing protein.;Transcript_evidence=AK374846 (DDBJ);ORF_evidence=Q53K61 (UniProt);TENOR=Os03t0632200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	24155727	24156091	.	+	.	Parent=Os03t0632200-00
Chr03	irgsp1_rep	CDS	24156092	24156559	.	+	0	Parent=Os03t0632200-00
Chr03	irgsp1_rep	three_prime_UTR	24156560	24156759	.	+	.	Parent=Os03t0632200-00
Chr03	irgsp1_rep	three_prime_UTR	24156864	24157253	.	+	.	Parent=Os03t0632200-00
Chr03	irgsp1_rep	mRNA	24168649	24168968	.	-	.	ID=Os03t0632666-01;Name=Os03t0632666-01;Locus_id=Os03g0632666;Note=Non-protein coding transcript.;Transcript_evidence=AK242727 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090046C02;TENOR=Os03t0632666-01
Chr03	irgsp1_rep	exon	24168649	24168968	.	-	.	Parent=Os03t0632666-01
Chr03	irgsp1_rep	mRNA	24174355	24180456	.	-	.	ID=Os03t0632800-01;Name=Os03t0632800-01;Locus_id=Os03g0632800;Oryzabase Gene Symbol Synonym(s)=OsRFP;Oryzabase Gene Name Synonym(s)=RING finger protein;Note=Similar to Zinc finger%2C C3HC4 type (RING finger) containing protein.;Transcript_evidence=AK242791 (DDBJ%2C Best hit);ORF_evidence=Q60DL1 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J090057N23;Oryzabase=21164;TENOR=Os03t0632800-01;KEGG=Os03t0632800-01
Chr03	irgsp1_rep	five_prime_UTR	24180341	24180456	.	-	.	Parent=Os03t0632800-01
Chr03	irgsp1_rep	CDS	24179953	24180340	.	-	0	Parent=Os03t0632800-01
Chr03	irgsp1_rep	CDS	24178579	24178678	.	-	2	Parent=Os03t0632800-01
Chr03	irgsp1_rep	CDS	24177402	24177732	.	-	1	Parent=Os03t0632800-01
Chr03	irgsp1_rep	CDS	24176827	24177242	.	-	0	Parent=Os03t0632800-01
Chr03	irgsp1_rep	CDS	24176661	24176711	.	-	1	Parent=Os03t0632800-01
Chr03	irgsp1_rep	CDS	24175999	24176011	.	-	1	Parent=Os03t0632800-01
Chr03	irgsp1_rep	three_prime_UTR	24175894	24175998	.	-	.	Parent=Os03t0632800-01
Chr03	irgsp1_rep	three_prime_UTR	24174355	24174885	.	-	.	Parent=Os03t0632800-01
Chr03	irgsp1_rep	mRNA	24176830	24180391	.	+	.	ID=Os03t0632950-00;Name=Os03t0632950-00;Locus_id=Os03g0632950;Note=Hypothetical protein.;Transcript_evidence=tplb0048g08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0632950-00
Chr03	irgsp1_rep	five_prime_UTR	24176830	24177230	.	+	.	Parent=Os03t0632950-00
Chr03	irgsp1_rep	five_prime_UTR	24177387	24177688	.	+	.	Parent=Os03t0632950-00
Chr03	irgsp1_rep	CDS	24177689	24177715	.	+	0	Parent=Os03t0632950-00
Chr03	irgsp1_rep	CDS	24178554	24178688	.	+	0	Parent=Os03t0632950-00
Chr03	irgsp1_rep	CDS	24179963	24180391	.	+	0	Parent=Os03t0632950-00
Chr03	irgsp1_rep	mRNA	24189817	24190437	.	+	.	ID=Os03t0633100-00;Name=Os03t0633100-00;Locus_id=Os03g0633100;Oryzabase Gene Symbol Synonym(s)=OsFbox156%2C Os_F0603;Oryzabase Gene Name Synonym(s)=F-box protein 156;Note=Similar to Leucine Rich Repeat family protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q60DL3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810);Oryzabase=16945;TENOR=Os03t0633100-00;KEGG=Os03t0633100-00
Chr03	irgsp1_rep	CDS	24189817	24190437	.	+	0	Parent=Os03t0633100-00
Chr03	irgsp1_rep	mRNA	24193288	24197393	.	+	.	ID=Os03t0633400-01;Name=Os03t0633400-01;Locus_id=Os03g0633400;Oryzabase Gene Symbol Synonym(s)=OsFbox156%2C Os_F0603;Oryzabase Gene Name Synonym(s)=F-box protein 156;Note=Similar to Leucine Rich Repeat family protein%2C expressed.;Transcript_evidence=AK240801 (DDBJ%2C Best hit);ORF_evidence=Q60DL3 (UniProt);NIAS_FLcDNA=J065002M03;Oryzabase=16945;TENOR=Os03t0633400-01;KEGG=Os03t0633400-01
Chr03	irgsp1_rep	CDS	24193288	24193359	.	+	0	Parent=Os03t0633400-01
Chr03	irgsp1_rep	CDS	24193440	24193624	.	+	0	Parent=Os03t0633400-01
Chr03	irgsp1_rep	CDS	24193759	24193863	.	+	1	Parent=Os03t0633400-01
Chr03	irgsp1_rep	CDS	24193990	24194087	.	+	1	Parent=Os03t0633400-01
Chr03	irgsp1_rep	CDS	24194197	24194432	.	+	2	Parent=Os03t0633400-01
Chr03	irgsp1_rep	CDS	24194510	24194576	.	+	0	Parent=Os03t0633400-01
Chr03	irgsp1_rep	CDS	24194662	24194747	.	+	2	Parent=Os03t0633400-01
Chr03	irgsp1_rep	CDS	24196878	24196976	.	+	0	Parent=Os03t0633400-01
Chr03	irgsp1_rep	CDS	24197053	24197115	.	+	0	Parent=Os03t0633400-01
Chr03	irgsp1_rep	three_prime_UTR	24197116	24197393	.	+	.	Parent=Os03t0633400-01
Chr03	irgsp1_rep	mRNA	24198649	24202021	.	-	.	ID=Os03t0633500-01;Name=Os03t0633500-01;Locus_id=Os03g0633500;RAP-DB Gene Symbol Synonym(s)=IAA11%2C OsIAA11;RAP-DB Gene Name Synonym(s)=Aux/IAA protein 11;CGSNL Gene Symbol=IAA11;Oryzabase Gene Symbol Synonym(s)=OsIAA11;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 11;Note=A member of Aux/IAA family protein%2C Regulation of lateral root initiation;Transcript_evidence=Inferred from literature;ORF_evidence=Q75GK0;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: protein binding (GO:0005515),Cellular Component: nucleus (GO:0005634);InterPro=AUX/IAA protein (IPR003311),AUX/IAA domain (IPR033389),PB1 domain (IPR000270);Manual Curation=May 16%2C 2017;Literature_PMID=21914651;Oryzabase=10522;TENOR=Os03t0633500-00
Chr03	irgsp1_rep	five_prime_UTR	24202017	24202021	.	-	.	Parent=Os03t0633500-01
Chr03	irgsp1_rep	CDS	24201724	24202016	.	-	0	Parent=Os03t0633500-01
Chr03	irgsp1_rep	CDS	24200043	24200236	.	-	1	Parent=Os03t0633500-01
Chr03	irgsp1_rep	CDS	24199550	24199670	.	-	2	Parent=Os03t0633500-01
Chr03	irgsp1_rep	CDS	24199069	24199130	.	-	1	Parent=Os03t0633500-01
Chr03	irgsp1_rep	CDS	24198919	24198950	.	-	2	Parent=Os03t0633500-01
Chr03	irgsp1_rep	three_prime_UTR	24198649	24198918	.	-	.	Parent=Os03t0633500-01
Chr03	irgsp1_rep	mRNA	24212554	24213858	.	+	.	ID=Os03t0633800-01;Name=Os03t0633800-01;Locus_id=Os03g0633800;CGSNL Gene Symbol=IAA12;Oryzabase Gene Symbol Synonym(s)=OsIAA12;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 12;Note=Similar to IAA6 (Fragment).;Transcript_evidence=AK073044 (DDBJ%2C Best hit);ORF_evidence=Q75GK1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Aux/IAA-ARF-dimerisation (IPR011525);NIAS_FLcDNA=J033001E11;Oryzabase=10524;Expression=AK073044;TENOR=Os03t0633800-01;KEGG=Os03t0633800-01
Chr03	irgsp1_rep	five_prime_UTR	24212554	24212683	.	+	.	Parent=Os03t0633800-01
Chr03	irgsp1_rep	CDS	24212684	24212886	.	+	0	Parent=Os03t0633800-01
Chr03	irgsp1_rep	CDS	24212989	24213378	.	+	1	Parent=Os03t0633800-01
Chr03	irgsp1_rep	CDS	24213488	24213575	.	+	1	Parent=Os03t0633800-01
Chr03	irgsp1_rep	three_prime_UTR	24213576	24213858	.	+	.	Parent=Os03t0633800-01
Chr03	irgsp1_rep	mRNA	24215372	24219439	.	-	.	ID=Os03t0633900-01;Name=Os03t0633900-01;Locus_id=Os03g0633900;Note=Nucleic acid-binding%2C OB-fold-like domain containing protein.;Transcript_evidence=AK068169 (DDBJ%2C Best hit),AK059181 (DDBJ%2C Best hit);ORF_evidence=NP_001148836.1 (RefSeq);GO=Biological Process: DNA replication (GO:0006260),Molecular Function: single-stranded DNA binding (GO:0003697);InterPro=Primosome PriB/single-strand DNA-binding (IPR000424),Single-strand DNA-binding (IPR011344),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=J013129H11,001-023-G01;Expression=AK068169;TENOR=Os03t0633900-01;KEGG=Os03t0633900-01
Chr03	irgsp1_rep	five_prime_UTR	24219399	24219439	.	-	.	Parent=Os03t0633900-01
Chr03	irgsp1_rep	CDS	24219046	24219398	.	-	0	Parent=Os03t0633900-01
Chr03	irgsp1_rep	CDS	24218201	24218339	.	-	1	Parent=Os03t0633900-01
Chr03	irgsp1_rep	CDS	24218036	24218117	.	-	0	Parent=Os03t0633900-01
Chr03	irgsp1_rep	CDS	24217219	24217370	.	-	2	Parent=Os03t0633900-01
Chr03	irgsp1_rep	CDS	24215601	24215810	.	-	0	Parent=Os03t0633900-01
Chr03	irgsp1_rep	three_prime_UTR	24215372	24215600	.	-	.	Parent=Os03t0633900-01
Chr03	irgsp1_rep	mRNA	24220064	24222271	.	-	.	ID=Os03t0634000-01;Name=Os03t0634000-01;Locus_id=Os03g0634000;Note=Similar to THA4.;Transcript_evidence=AK063673 (DDBJ%2C Best hit);ORF_evidence=NP_001104942.1 (RefSeq);GO=Biological Process: protein secretion (GO:0009306),Biological Process: protein transport (GO:0015031),Cellular Component: plasma membrane (GO:0005886),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: protein transporter activity (GO:0008565);InterPro=Bacterial sec-independent translocation protein MttA/Hcf106 (IPR003369),Twin-arginine translocation protein TatB-like (IPR003998),Twin-arginine translocation protein TatA/E (IPR006312);NIAS_FLcDNA=001-119-D09;Expression=AK063673;TENOR=Os03t0634000-01;KEGG=Os03t0634000-01
Chr03	irgsp1_rep	five_prime_UTR	24222197	24222271	.	-	.	Parent=Os03t0634000-01
Chr03	irgsp1_rep	CDS	24221825	24222196	.	-	0	Parent=Os03t0634000-01
Chr03	irgsp1_rep	CDS	24220257	24220397	.	-	0	Parent=Os03t0634000-01
Chr03	irgsp1_rep	three_prime_UTR	24220064	24220256	.	-	.	Parent=Os03t0634000-01
Chr03	irgsp1_rep	mRNA	24226372	24227930	.	-	.	ID=Os03t0634400-01;Name=Os03t0634400-01;Locus_id=Os03g0634400;CGSNL Gene Symbol=CIPK07;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 7;Oryzabase Gene Symbol Synonym(s)=OsCIPK07%2C CIPK7%2C OsCIPK7;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 7;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK111510 (DDBJ%2C Best hit);ORF_evidence=Q75GK4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),NAF domain (IPR004041),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),NAF/FISL domain (IPR018451),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013001I04;Oryzabase=7394;Expression=AK111510;TENOR=Os03t0634400-01;KEGG=Os03t0634400-01 (EC:2.7.11.1)
Chr03	irgsp1_rep	five_prime_UTR	24227861	24227930	.	-	.	Parent=Os03t0634400-01
Chr03	irgsp1_rep	CDS	24226517	24227860	.	-	0	Parent=Os03t0634400-01
Chr03	irgsp1_rep	three_prime_UTR	24226372	24226516	.	-	.	Parent=Os03t0634400-01
Chr03	irgsp1_rep	mRNA	24250816	24252387	.	-	.	ID=Os03t0635000-00;Name=Os03t0635000-00;Locus_id=Os03g0635000;Note=Hypothetical conserved gene.;Transcript_evidence=AK371052 (DDBJ);ORF_evidence=Q75GK7 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os03t0635000-00;KEGG=Os03t0635000-00
Chr03	irgsp1_rep	CDS	24250816	24252387	.	-	0	Parent=Os03t0635000-00
Chr03	irgsp1_rep	mRNA	24252686	24256939	.	-	.	ID=Os03t0635100-01;Name=Os03t0635100-01;Locus_id=Os03g0635100;RAP-DB Gene Symbol Synonym(s)=RGG1;RAP-DB Gene Name Synonym(s)=heterotrimeric G-protein gamma subunit 1%2C G protein gamma1 subunit%2C rice G protein gamma subunit 1%2C G protein gamma subunit 1;CGSNL Gene Symbol=RGG1;CGSNL Gene Name=RICE G PROTEIN GAMMA SUBUNIT 1;Oryzabase Gene Symbol Synonym(s)=OsRGG1;Oryzabase Gene Name Synonym(s)=heterotrimeric G-protein gamma subunit 1%2C G protein gamma1 subunit%2C rice G protein gamma subunit 1%2C G protein gamma subunit 1;Note=Heterotrimeric G protein gamma subunit 1%2C Regulation of abiotic stresses%2C Salinity stress tolerance;Transcript_evidence=AK241226,AB120662,GU111573 (Swarna: indica);ORF_evidence=Q75WU1,B8AN27 (indica);GO=Biological Process: G-protein coupled receptor signaling pathway (GO:0007186),Molecular Function: signal transducer activity (GO:0004871),Cellular Component: heterotrimeric G-protein complex (GO:0005834);InterPro=G-protein gamma-like domain (IPR015898);NIAS_FLcDNA=J065124M13;Manual Curation=October 31%2C 2016;Literature_PMID=27785615,15078334;Oryzabase=18142;TENOR=Os03t0635100-01;KEGG=Os03t0635100-01
Chr03	irgsp1_rep	five_prime_UTR	24256852	24256939	.	-	.	Parent=Os03t0635100-01
Chr03	irgsp1_rep	CDS	24256753	24256851	.	-	0	Parent=Os03t0635100-01
Chr03	irgsp1_rep	CDS	24253374	24253426	.	-	0	Parent=Os03t0635100-01
Chr03	irgsp1_rep	CDS	24253195	24253239	.	-	1	Parent=Os03t0635100-01
Chr03	irgsp1_rep	CDS	24253026	24253110	.	-	1	Parent=Os03t0635100-01
Chr03	irgsp1_rep	three_prime_UTR	24252686	24253025	.	-	.	Parent=Os03t0635100-01
Chr03	irgsp1_rep	mRNA	24271414	24277905	.	-	.	ID=Os03t0635800-01;Name=Os03t0635800-01;Locus_id=Os03g0635800;Note=Protein of unknown function DUF828%2C plant family protein.;Transcript_evidence=AK121696 (DDBJ%2C Best hit);ORF_evidence=NP_974549.1 (RefSeq);InterPro=Domain of unknown function DUF828 (IPR008546);NIAS_FLcDNA=J033072G11;Expression=AK121696;TENOR=Os03t0635800-01;KEGG=Os03t0635800-01
Chr03	irgsp1_rep	five_prime_UTR	24277716	24277905	.	-	.	Parent=Os03t0635800-01
Chr03	irgsp1_rep	CDS	24277374	24277715	.	-	0	Parent=Os03t0635800-01
Chr03	irgsp1_rep	CDS	24276375	24276485	.	-	0	Parent=Os03t0635800-01
Chr03	irgsp1_rep	CDS	24272956	24273349	.	-	0	Parent=Os03t0635800-01
Chr03	irgsp1_rep	CDS	24272584	24272873	.	-	2	Parent=Os03t0635800-01
Chr03	irgsp1_rep	three_prime_UTR	24272469	24272583	.	-	.	Parent=Os03t0635800-01
Chr03	irgsp1_rep	three_prime_UTR	24272328	24272385	.	-	.	Parent=Os03t0635800-01
Chr03	irgsp1_rep	three_prime_UTR	24271414	24272244	.	-	.	Parent=Os03t0635800-01
Chr03	irgsp1_rep	mRNA	24284210	24284950	.	+	.	ID=Os03t0636300-01;Name=Os03t0636300-01;Locus_id=Os03g0636300;Note=Conserved hypothetical protein.;Transcript_evidence=AK242334 (DDBJ%2C Best hit);ORF_evidence=NP_001173553.1 (RefSeq);NIAS_FLcDNA=J075199A02;TENOR=Os03t0636300-01;KEGG=Os03t0636300-01
Chr03	irgsp1_rep	CDS	24284210	24284755	.	+	0	Parent=Os03t0636300-01
Chr03	irgsp1_rep	three_prime_UTR	24284756	24284950	.	+	.	Parent=Os03t0636300-01
Chr03	irgsp1_rep	mRNA	24341231	24344739	.	+	.	ID=Os03t0636600-01;Name=Os03t0636600-01;Locus_id=Os03g0636600;Note=Hypothetical conserved gene.;Transcript_evidence=AK069223 (DDBJ%2C Best hit);ORF_evidence=Q69MX1 (UniProt);NIAS_FLcDNA=J023019A01;TENOR=Os03t0636600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	24341231	24341343	.	+	.	Parent=Os03t0636600-01
Chr03	irgsp1_rep	CDS	24341344	24341667	.	+	0	Parent=Os03t0636600-01
Chr03	irgsp1_rep	three_prime_UTR	24341668	24342111	.	+	.	Parent=Os03t0636600-01
Chr03	irgsp1_rep	three_prime_UTR	24342740	24343018	.	+	.	Parent=Os03t0636600-01
Chr03	irgsp1_rep	three_prime_UTR	24344152	24344739	.	+	.	Parent=Os03t0636600-01
Chr03	irgsp1_rep	mRNA	24341245	24344718	.	+	.	ID=Os03t0636600-02;Name=Os03t0636600-02;Locus_id=Os03g0636600;Note=Hypothetical conserved gene.;Transcript_evidence=AK065417 (DDBJ%2C Best hit);ORF_evidence=Q69MX1 (UniProt);NIAS_FLcDNA=J013022E06;Expression=AK065417;TENOR=Os03t0636600-02;KEGG=Os03t0636600-02
Chr03	irgsp1_rep	five_prime_UTR	24341245	24341343	.	+	.	Parent=Os03t0636600-02
Chr03	irgsp1_rep	CDS	24341344	24341667	.	+	0	Parent=Os03t0636600-02
Chr03	irgsp1_rep	three_prime_UTR	24341668	24342111	.	+	.	Parent=Os03t0636600-02
Chr03	irgsp1_rep	three_prime_UTR	24342740	24344718	.	+	.	Parent=Os03t0636600-02
Chr03	irgsp1_rep	mRNA	24347498	24349006	.	+	.	ID=Os03t0636700-00;Name=Os03t0636700-00;Locus_id=Os03g0636700;Note=IQ calmodulin-binding region domain containing protein.;Transcript_evidence=EU955650 (DDBJ);ORF_evidence=NP_001147510.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);TENOR=Os03t0636700-00;KEGG=Os03t0636700-00
Chr03	irgsp1_rep	CDS	24347498	24347872	.	+	0	Parent=Os03t0636700-00
Chr03	irgsp1_rep	CDS	24347974	24348228	.	+	0	Parent=Os03t0636700-00
Chr03	irgsp1_rep	CDS	24348293	24349006	.	+	0	Parent=Os03t0636700-00
Chr03	irgsp1_rep	mRNA	24351975	24357284	.	-	.	ID=Os03t0636800-01;Name=Os03t0636800-01;Locus_id=Os03g0636800;Oryzabase Gene Symbol Synonym(s)=OsNek1;Oryzabase Gene Name Synonym(s)=NIMA-related kinase 1;Note=LSTK-1-like kinase.;Transcript_evidence=AK073903 (DDBJ%2C Best hit);ORF_evidence=Q10GB1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033073A22;Oryzabase=9925;Expression=AK073903;TENOR=Os03t0636800-01;KEGG=Os03t0636800-01 (EC:2.7.11.1)
Chr03	irgsp1_rep	five_prime_UTR	24356989	24357284	.	-	.	Parent=Os03t0636800-01
Chr03	irgsp1_rep	five_prime_UTR	24356088	24356115	.	-	.	Parent=Os03t0636800-01
Chr03	irgsp1_rep	CDS	24356002	24356087	.	-	0	Parent=Os03t0636800-01
Chr03	irgsp1_rep	CDS	24355790	24355856	.	-	1	Parent=Os03t0636800-01
Chr03	irgsp1_rep	CDS	24355447	24355512	.	-	0	Parent=Os03t0636800-01
Chr03	irgsp1_rep	CDS	24355240	24355286	.	-	0	Parent=Os03t0636800-01
Chr03	irgsp1_rep	CDS	24355077	24355122	.	-	1	Parent=Os03t0636800-01
Chr03	irgsp1_rep	CDS	24354893	24354973	.	-	0	Parent=Os03t0636800-01
Chr03	irgsp1_rep	CDS	24354755	24354797	.	-	0	Parent=Os03t0636800-01
Chr03	irgsp1_rep	CDS	24354615	24354664	.	-	2	Parent=Os03t0636800-01
Chr03	irgsp1_rep	CDS	24354457	24354538	.	-	0	Parent=Os03t0636800-01
Chr03	irgsp1_rep	CDS	24354320	24354369	.	-	2	Parent=Os03t0636800-01
Chr03	irgsp1_rep	CDS	24353768	24353841	.	-	0	Parent=Os03t0636800-01
Chr03	irgsp1_rep	CDS	24353624	24353675	.	-	1	Parent=Os03t0636800-01
Chr03	irgsp1_rep	CDS	24353089	24353532	.	-	0	Parent=Os03t0636800-01
Chr03	irgsp1_rep	CDS	24352149	24352760	.	-	0	Parent=Os03t0636800-01
Chr03	irgsp1_rep	three_prime_UTR	24351975	24352148	.	-	.	Parent=Os03t0636800-01
Chr03	irgsp1_rep	mRNA	24351648	24357161	.	-	.	ID=Os03t0636800-02;Name=Os03t0636800-02;Locus_id=Os03g0636800;Oryzabase Gene Symbol Synonym(s)=OsNek1;Oryzabase Gene Name Synonym(s)=NIMA-related kinase 1;Note=Similar to cDNA clone:J033073A22%2C full insert sequence.;Transcript_evidence=AK073129 (DDBJ%2C Best hit);ORF_evidence=B7EMV6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033004H20;Oryzabase=9925;TENOR=Os03t0636800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	24356989	24357161	.	-	.	Parent=Os03t0636800-02
Chr03	irgsp1_rep	five_prime_UTR	24356088	24356115	.	-	.	Parent=Os03t0636800-02
Chr03	irgsp1_rep	CDS	24356002	24356087	.	-	0	Parent=Os03t0636800-02
Chr03	irgsp1_rep	CDS	24355790	24355856	.	-	1	Parent=Os03t0636800-02
Chr03	irgsp1_rep	CDS	24355447	24355512	.	-	0	Parent=Os03t0636800-02
Chr03	irgsp1_rep	CDS	24355240	24355286	.	-	0	Parent=Os03t0636800-02
Chr03	irgsp1_rep	CDS	24355077	24355122	.	-	1	Parent=Os03t0636800-02
Chr03	irgsp1_rep	CDS	24354893	24354973	.	-	0	Parent=Os03t0636800-02
Chr03	irgsp1_rep	CDS	24354755	24354774	.	-	0	Parent=Os03t0636800-02
Chr03	irgsp1_rep	CDS	24354661	24354664	.	-	1	Parent=Os03t0636800-02
Chr03	irgsp1_rep	three_prime_UTR	24354615	24354660	.	-	.	Parent=Os03t0636800-02
Chr03	irgsp1_rep	three_prime_UTR	24354457	24354538	.	-	.	Parent=Os03t0636800-02
Chr03	irgsp1_rep	three_prime_UTR	24354320	24354369	.	-	.	Parent=Os03t0636800-02
Chr03	irgsp1_rep	three_prime_UTR	24353768	24353841	.	-	.	Parent=Os03t0636800-02
Chr03	irgsp1_rep	three_prime_UTR	24353624	24353675	.	-	.	Parent=Os03t0636800-02
Chr03	irgsp1_rep	three_prime_UTR	24353089	24353532	.	-	.	Parent=Os03t0636800-02
Chr03	irgsp1_rep	three_prime_UTR	24351648	24352760	.	-	.	Parent=Os03t0636800-02
Chr03	irgsp1_rep	mRNA	24401251	24402892	.	-	.	ID=Os03t0637600-02;Name=Os03t0637600-02;Locus_id=Os03g0637600;Oryzabase Gene Name Synonym(s)=leucine-rich repeat (LRR)-containing protein;Note=Leucine-rich repeat%2C plant specific containing protein.;Transcript_evidence=AK105732 (DDBJ%2C Best hit),AK068135 (DDBJ%2C Best hit),AK109350 (DDBJ%2C Best hit);ORF_evidence=A2XJX3 (UniProt);NIAS_FLcDNA=001-201-H06,J013133O22,006-204-E06;Oryzabase=22755;Expression=AK105732;TENOR=Os03t0637600-02;KEGG=Os03t0637600-02
Chr03	irgsp1_rep	five_prime_UTR	24402800	24402892	.	-	.	Parent=Os03t0637600-02
Chr03	irgsp1_rep	CDS	24401615	24402799	.	-	0	Parent=Os03t0637600-02
Chr03	irgsp1_rep	three_prime_UTR	24401251	24401614	.	-	.	Parent=Os03t0637600-02
Chr03	irgsp1_rep	mRNA	24401404	24402525	.	-	.	ID=Os03t0637600-04;Name=Os03t0637600-04;Locus_id=Os03g0637600;Oryzabase Gene Name Synonym(s)=leucine-rich repeat (LRR)-containing protein;Note=Similar to systemin receptor SR160.;Transcript_evidence=AK061561 (DDBJ%2C Best hit);ORF_evidence=NP_001152233.1 (RefSeq);InterPro=Leucine-rich repeat%2C typical subtype (IPR003591);NIAS_FLcDNA=006-311-D10;Oryzabase=22755;Expression=AK061561;TENOR=Os03t0637600-04;KEGG=Os03t0637600-04
Chr03	irgsp1_rep	five_prime_UTR	24402524	24402525	.	-	.	Parent=Os03t0637600-04
Chr03	irgsp1_rep	CDS	24401615	24402523	.	-	0	Parent=Os03t0637600-04
Chr03	irgsp1_rep	three_prime_UTR	24401404	24401614	.	-	.	Parent=Os03t0637600-04
Chr03	irgsp1_rep	mRNA	24415884	24420065	.	+	.	ID=Os03t0637800-01;Name=Os03t0637800-01;Locus_id=Os03g0637800;RAP-DB Gene Symbol Synonym(s)=OsCR4%2C MIS2;RAP-DB Gene Name Synonym(s)=CRINKLY4%2C rice CRINKLY4 orthologue%2C CR4 ortholog%2C MINI SEED 2;CGSNL Gene Symbol=MIS2;CGSNL Gene Name=MINI SEED 2;Oryzabase Gene Symbol Synonym(s)=OsCR4%2C CR4%2C OsMIS2;Oryzabase Gene Name Synonym(s)=CRINKLY4%2C rice CRINKLY4 orthologue%2C CR4 ortholog;Note=Crinkly4 receptor-like kinase%2C Epidermal cell differentiation%2C Interlocking of the palea and lemma%2C Control of grain size and shape;Transcript_evidence=AB057787;ORF_evidence=Q75J39;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Regulator of Chromosome condensation 1/beta-lactamase-inhibitor protein II (IPR009091),TNFR/NGFR cysteine-rich region (IPR001368),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine-threonine/tyrosine-protein kinase catalytic domain (IPR001245),Regulator of Chromosome condensation%2C RCC1 (IPR000408),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);Manual Curation=July 7%2C 2020;Literature_PMID=32006119,24596329,22332708;Oryzabase=10376;TENOR=Os03t0637800-01
Chr03	irgsp1_rep	five_prime_UTR	24415884	24416369	.	+	.	Parent=Os03t0637800-01
Chr03	irgsp1_rep	five_prime_UTR	24416655	24416804	.	+	.	Parent=Os03t0637800-01
Chr03	irgsp1_rep	five_prime_UTR	24416931	24416969	.	+	.	Parent=Os03t0637800-01
Chr03	irgsp1_rep	CDS	24416970	24419675	.	+	0	Parent=Os03t0637800-01
Chr03	irgsp1_rep	three_prime_UTR	24419676	24420065	.	+	.	Parent=Os03t0637800-01
Chr03	irgsp1_rep	mRNA	24426730	24428723	.	-	.	ID=Os03t0637900-01;Name=Os03t0637900-01;Locus_id=Os03g0637900;Note=Similar to Centromere protein-like protein (Fragment).;Transcript_evidence=AK060224 (DDBJ%2C Best hit);ORF_evidence=Q84VB6 (UniProt);NIAS_FLcDNA=001-002-G04;Expression=AK060224;TENOR=Os03t0637900-01;KEGG=Os03t0637900-01
Chr03	irgsp1_rep	five_prime_UTR	24428708	24428723	.	-	.	Parent=Os03t0637900-01
Chr03	irgsp1_rep	CDS	24428480	24428707	.	-	0	Parent=Os03t0637900-01
Chr03	irgsp1_rep	CDS	24427073	24428137	.	-	0	Parent=Os03t0637900-01
Chr03	irgsp1_rep	three_prime_UTR	24426730	24427072	.	-	.	Parent=Os03t0637900-01
Chr03	irgsp1_rep	mRNA	24429236	24429946	.	-	.	ID=Os03t0638000-00;Name=Os03t0638000-00;Locus_id=Os03g0638000;Note=Similar to Centromere protein-like protein (Fragment).;Transcript_evidence=AY224555 (DDBJ%2C Best hit);ORF_evidence=Q84VD9 (UniProt);Expression=AY224555;TENOR=Os03t0638000-00;KEGG=Os03t0638000-00
Chr03	irgsp1_rep	CDS	24429236	24429946	.	-	0	Parent=Os03t0638000-00
Chr03	irgsp1_rep	mRNA	24449135	24451270	.	+	.	ID=Os03t0638200-01;Name=Os03t0638200-01;Locus_id=Os03g0638200;Note=Similar to Major facilitator superfamily protein%2C expressed.;Transcript_evidence=AK069267 (DDBJ%2C Best hit);ORF_evidence=Q10GA1 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transmembrane transporter activity (GO:0022857);InterPro=General substrate transporter (IPR005828),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J023013A09;TENOR=Os03t0638200-01
Chr03	irgsp1_rep	five_prime_UTR	24449135	24449436	.	+	.	Parent=Os03t0638200-01
Chr03	irgsp1_rep	five_prime_UTR	24449909	24450203	.	+	.	Parent=Os03t0638200-01
Chr03	irgsp1_rep	five_prime_UTR	24450551	24450580	.	+	.	Parent=Os03t0638200-01
Chr03	irgsp1_rep	CDS	24450581	24450837	.	+	0	Parent=Os03t0638200-01
Chr03	irgsp1_rep	CDS	24451235	24451270	.	+	1	Parent=Os03t0638200-01
Chr03	irgsp1_rep	mRNA	24449564	24453890	.	+	.	ID=Os03t0638200-02;Name=Os03t0638200-02;Locus_id=Os03g0638200;Note=Similar to Transporter-like protein.;Transcript_evidence=AK119211 (DDBJ%2C Best hit);ORF_evidence=Q10GA1 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transmembrane transporter activity (GO:0022857);InterPro=General substrate transporter (IPR005828),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=001-041-E05;Expression=AK119211;TENOR=Os03t0638200-02;KEGG=Os03t0638200-02
Chr03	irgsp1_rep	five_prime_UTR	24449564	24449593	.	+	.	Parent=Os03t0638200-02
Chr03	irgsp1_rep	five_prime_UTR	24449880	24450203	.	+	.	Parent=Os03t0638200-02
Chr03	irgsp1_rep	five_prime_UTR	24450551	24450580	.	+	.	Parent=Os03t0638200-02
Chr03	irgsp1_rep	CDS	24450581	24450837	.	+	0	Parent=Os03t0638200-02
Chr03	irgsp1_rep	CDS	24451235	24451472	.	+	1	Parent=Os03t0638200-02
Chr03	irgsp1_rep	CDS	24451996	24452530	.	+	0	Parent=Os03t0638200-02
Chr03	irgsp1_rep	CDS	24452616	24452818	.	+	2	Parent=Os03t0638200-02
Chr03	irgsp1_rep	CDS	24453400	24453609	.	+	0	Parent=Os03t0638200-02
Chr03	irgsp1_rep	three_prime_UTR	24453610	24453890	.	+	.	Parent=Os03t0638200-02
Chr03	irgsp1_rep	mRNA	24452396	24453609	.	-	.	ID=Os03t0638250-00;Name=Os03t0638250-00;Locus_id=Os03g0638250;Note=Hypothetical protein.;Transcript_evidence=BT017241 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0638250-00
Chr03	irgsp1_rep	five_prime_UTR	24453525	24453609	.	-	.	Parent=Os03t0638250-00
Chr03	irgsp1_rep	CDS	24453411	24453524	.	-	0	Parent=Os03t0638250-00
Chr03	irgsp1_rep	CDS	24452725	24452829	.	-	0	Parent=Os03t0638250-00
Chr03	irgsp1_rep	three_prime_UTR	24452604	24452724	.	-	.	Parent=Os03t0638250-00
Chr03	irgsp1_rep	three_prime_UTR	24452396	24452518	.	-	.	Parent=Os03t0638250-00
Chr03	irgsp1_rep	mRNA	24454477	24457481	.	-	.	ID=Os03t0638300-01;Name=Os03t0638300-01;Locus_id=Os03g0638300;Note=Tesmin/TSO1-like%2C CXC domain containing protein.;Transcript_evidence=AK242750 (DDBJ%2C Best hit);ORF_evidence=Q10G99 (UniProt);InterPro=Tesmin/TSO1-like%2C CXC (IPR005172);NIAS_FLcDNA=J090050H19;TENOR=Os03t0638300-01;KEGG=Os03t0638300-01
Chr03	irgsp1_rep	five_prime_UTR	24457433	24457481	.	-	.	Parent=Os03t0638300-01
Chr03	irgsp1_rep	CDS	24457341	24457432	.	-	0	Parent=Os03t0638300-01
Chr03	irgsp1_rep	CDS	24456738	24456987	.	-	1	Parent=Os03t0638300-01
Chr03	irgsp1_rep	three_prime_UTR	24456642	24456737	.	-	.	Parent=Os03t0638300-01
Chr03	irgsp1_rep	three_prime_UTR	24456264	24456330	.	-	.	Parent=Os03t0638300-01
Chr03	irgsp1_rep	three_prime_UTR	24455391	24455556	.	-	.	Parent=Os03t0638300-01
Chr03	irgsp1_rep	three_prime_UTR	24454924	24455295	.	-	.	Parent=Os03t0638300-01
Chr03	irgsp1_rep	three_prime_UTR	24454477	24454800	.	-	.	Parent=Os03t0638300-01
Chr03	irgsp1_rep	mRNA	24466606	24473558	.	+	.	ID=Os03t0638400-01;Name=Os03t0638400-01;Locus_id=Os03g0638400;Note=Similar to OSIGBa0153E02-OSIGBa0093I20.19 protein.;Transcript_evidence=AK103071 (DDBJ%2C Best hit);ORF_evidence=Q01HQ6 (UniProt);NIAS_FLcDNA=J033118B06;TENOR=Os03t0638400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	24466606	24467055	.	+	.	Parent=Os03t0638400-01
Chr03	irgsp1_rep	five_prime_UTR	24470149	24470220	.	+	.	Parent=Os03t0638400-01
Chr03	irgsp1_rep	five_prime_UTR	24471323	24471876	.	+	.	Parent=Os03t0638400-01
Chr03	irgsp1_rep	CDS	24471877	24472332	.	+	0	Parent=Os03t0638400-01
Chr03	irgsp1_rep	three_prime_UTR	24472333	24473558	.	+	.	Parent=Os03t0638400-01
Chr03	irgsp1_rep	mRNA	24476060	24480927	.	+	.	ID=Os03t0638800-01;Name=Os03t0638800-01;Locus_id=Os03g0638800;Note=Similar to ATP binding protein.;Transcript_evidence=AK243690 (DDBJ%2C Best hit);ORF_evidence=B4G1F0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J100090O16;TENOR=Os03t0638800-01;KEGG=Os03t0638800-01
Chr03	irgsp1_rep	five_prime_UTR	24476060	24476330	.	+	.	Parent=Os03t0638800-01
Chr03	irgsp1_rep	five_prime_UTR	24476643	24476668	.	+	.	Parent=Os03t0638800-01
Chr03	irgsp1_rep	CDS	24476669	24476960	.	+	0	Parent=Os03t0638800-01
Chr03	irgsp1_rep	CDS	24478962	24479083	.	+	2	Parent=Os03t0638800-01
Chr03	irgsp1_rep	CDS	24479521	24479729	.	+	0	Parent=Os03t0638800-01
Chr03	irgsp1_rep	CDS	24479809	24479983	.	+	1	Parent=Os03t0638800-01
Chr03	irgsp1_rep	CDS	24480096	24480230	.	+	0	Parent=Os03t0638800-01
Chr03	irgsp1_rep	CDS	24480311	24480517	.	+	0	Parent=Os03t0638800-01
Chr03	irgsp1_rep	three_prime_UTR	24480518	24480927	.	+	.	Parent=Os03t0638800-01
Chr03	irgsp1_rep	mRNA	24487877	24489307	.	-	.	ID=Os03t0638900-01;Name=Os03t0638900-01;Locus_id=Os03g0638900;Oryzabase Gene Symbol Synonym(s)=OsFbox157%2C Os_F0188;Oryzabase Gene Name Synonym(s)=F-box protein 157;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK108094 (DDBJ%2C Best hit);ORF_evidence=Q2QMC1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-139-A06;Oryzabase=16946;Expression=AK108094;TENOR=Os03t0638900-01;KEGG=Os03t0638900-01
Chr03	irgsp1_rep	five_prime_UTR	24489210	24489307	.	-	.	Parent=Os03t0638900-01
Chr03	irgsp1_rep	CDS	24488325	24489209	.	-	0	Parent=Os03t0638900-01
Chr03	irgsp1_rep	three_prime_UTR	24487877	24488324	.	-	.	Parent=Os03t0638900-01
Chr03	irgsp1_rep	mRNA	24514494	24515219	.	+	.	ID=Os03t0639100-00;Name=Os03t0639100-00;Locus_id=Os03g0639100;Note=Hypothetical conserved gene.;Transcript_evidence=CT835131 (DDBJ%2C Best hit);ORF_evidence=Q6AUE6 (UniProt);TENOR=Os03t0639100-00;KEGG=Os03t0639100-00
Chr03	irgsp1_rep	five_prime_UTR	24514494	24514552	.	+	.	Parent=Os03t0639100-00
Chr03	irgsp1_rep	CDS	24514553	24515191	.	+	0	Parent=Os03t0639100-00
Chr03	irgsp1_rep	three_prime_UTR	24515192	24515219	.	+	.	Parent=Os03t0639100-00
Chr03	irgsp1_rep	mRNA	24518166	24527426	.	+	.	ID=Os03t0639200-01;Name=Os03t0639200-01;Locus_id=Os03g0639200;Note=Similar to DIRP family protein%2C expressed.;Transcript_evidence=AK242691 (DDBJ%2C Best hit);ORF_evidence=Q10G93 (UniProt);NIAS_FLcDNA=J090035E01;TENOR=Os03t0639200-01;KEGG=Os03t0639200-01
Chr03	irgsp1_rep	CDS	24518166	24518429	.	+	0	Parent=Os03t0639200-01
Chr03	irgsp1_rep	CDS	24518567	24518704	.	+	0	Parent=Os03t0639200-01
Chr03	irgsp1_rep	CDS	24520088	24520102	.	+	0	Parent=Os03t0639200-01
Chr03	irgsp1_rep	three_prime_UTR	24520103	24520217	.	+	.	Parent=Os03t0639200-01
Chr03	irgsp1_rep	three_prime_UTR	24521180	24521278	.	+	.	Parent=Os03t0639200-01
Chr03	irgsp1_rep	three_prime_UTR	24521445	24521507	.	+	.	Parent=Os03t0639200-01
Chr03	irgsp1_rep	three_prime_UTR	24522271	24522348	.	+	.	Parent=Os03t0639200-01
Chr03	irgsp1_rep	three_prime_UTR	24524443	24524632	.	+	.	Parent=Os03t0639200-01
Chr03	irgsp1_rep	three_prime_UTR	24524889	24525154	.	+	.	Parent=Os03t0639200-01
Chr03	irgsp1_rep	three_prime_UTR	24525248	24525620	.	+	.	Parent=Os03t0639200-01
Chr03	irgsp1_rep	three_prime_UTR	24526282	24527426	.	+	.	Parent=Os03t0639200-01
Chr03	irgsp1_rep	mRNA	24528339	24528683	.	+	.	ID=Os03t0639233-00;Name=Os03t0639233-00;Locus_id=Os03g0639233;Note=Similar to NADH dehydrogenase subunit K.;Transcript_evidence=EU942242 (DDBJ);ORF_evidence=NP_039387.2 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: NADH dehydrogenase (ubiquinone) activity (GO:0008137),Molecular Function: oxidoreductase activity%2C acting on NADH or NADPH (GO:0016651),Molecular Function: quinone binding (GO:0048038),Molecular Function: 4 iron%2C 4 sulfur cluster binding (GO:0051539);InterPro=NADH:ubiquinone oxidoreductase-like%2C 20kDa subunit (IPR006137),[NiFe]-hydrogenase-3-type complex%2C small subunit/NADH:quinone oxidoreductase%2C subunit NuoB (IPR014406);TENOR=Os03t0639233-00;KEGG=Os03t0639233-00 (EC:1.6.5.3)
Chr03	irgsp1_rep	CDS	24528339	24528674	.	+	0	Parent=Os03t0639233-00
Chr03	irgsp1_rep	three_prime_UTR	24528675	24528683	.	+	.	Parent=Os03t0639233-00
Chr03	irgsp1_rep	mRNA	24544511	24549550	.	+	.	ID=Os03t0639300-01;Name=Os03t0639300-01;Locus_id=Os03g0639300;CGSNL Gene Symbol=PIL12;Oryzabase Gene Symbol Synonym(s)=OsPIL12%2C OsbHLH103%2C bHLH103;Oryzabase Gene Name Synonym(s)=PHYTOCHROME INTERACTING FACTOR-LIKE 12%2C basic helix-loop-helix protein 103;Note=Similar to Helix-loop-helix DNA-binding domain containing protein%2C expressed.;Transcript_evidence=AK060505 (DDBJ%2C Best hit);ORF_evidence=Q10G91 (UniProt);NIAS_FLcDNA=001-018-H11;Oryzabase=14335;Expression=AK060505;TENOR=Os03t0639300-01;KEGG=Os03t0639300-01
Chr03	irgsp1_rep	five_prime_UTR	24544511	24544683	.	+	.	Parent=Os03t0639300-01
Chr03	irgsp1_rep	five_prime_UTR	24545058	24545114	.	+	.	Parent=Os03t0639300-01
Chr03	irgsp1_rep	CDS	24545115	24545170	.	+	0	Parent=Os03t0639300-01
Chr03	irgsp1_rep	CDS	24545275	24546142	.	+	1	Parent=Os03t0639300-01
Chr03	irgsp1_rep	three_prime_UTR	24546143	24546278	.	+	.	Parent=Os03t0639300-01
Chr03	irgsp1_rep	three_prime_UTR	24546367	24546432	.	+	.	Parent=Os03t0639300-01
Chr03	irgsp1_rep	three_prime_UTR	24546507	24546572	.	+	.	Parent=Os03t0639300-01
Chr03	irgsp1_rep	three_prime_UTR	24546683	24546889	.	+	.	Parent=Os03t0639300-01
Chr03	irgsp1_rep	three_prime_UTR	24547002	24547131	.	+	.	Parent=Os03t0639300-01
Chr03	irgsp1_rep	three_prime_UTR	24549176	24549550	.	+	.	Parent=Os03t0639300-01
Chr03	irgsp1_rep	mRNA	24545058	24547092	.	-	.	ID=Os03t0639350-00;Name=Os03t0639350-00;Locus_id=Os03g0639350;Note=Hypothetical protein.;Transcript_evidence=tplb0027h07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0639350-00
Chr03	irgsp1_rep	five_prime_UTR	24547000	24547092	.	-	.	Parent=Os03t0639350-00
Chr03	irgsp1_rep	five_prime_UTR	24546681	24546906	.	-	.	Parent=Os03t0639350-00
Chr03	irgsp1_rep	five_prime_UTR	24546498	24546570	.	-	.	Parent=Os03t0639350-00
Chr03	irgsp1_rep	five_prime_UTR	24546417	24546422	.	-	.	Parent=Os03t0639350-00
Chr03	irgsp1_rep	CDS	24546366	24546416	.	-	0	Parent=Os03t0639350-00
Chr03	irgsp1_rep	CDS	24546140	24546277	.	-	0	Parent=Os03t0639350-00
Chr03	irgsp1_rep	CDS	24545285	24546064	.	-	0	Parent=Os03t0639350-00
Chr03	irgsp1_rep	CDS	24545085	24545177	.	-	0	Parent=Os03t0639350-00
Chr03	irgsp1_rep	three_prime_UTR	24545058	24545084	.	-	.	Parent=Os03t0639350-00
Chr03	irgsp1_rep	mRNA	24564913	24565726	.	-	.	ID=Os03t0639400-01;Name=Os03t0639400-01;Locus_id=Os03g0639400;Note=Pectinesterase inhibitor domain containing protein.;Transcript_evidence=AK110764 (DDBJ%2C Best hit);ORF_evidence=A3AKQ5 (UniProt);GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);NIAS_FLcDNA=002-171-A02;Oryzabase=22765;Expression=AK110764;TENOR=Os03t0639400-01;KEGG=Os03t0639400-01
Chr03	irgsp1_rep	five_prime_UTR	24565719	24565726	.	-	.	Parent=Os03t0639400-01
Chr03	irgsp1_rep	CDS	24564993	24565718	.	-	0	Parent=Os03t0639400-01
Chr03	irgsp1_rep	three_prime_UTR	24564913	24564992	.	-	.	Parent=Os03t0639400-01
Chr03	irgsp1_rep	mRNA	24574540	24579212	.	-	.	ID=Os03t0639600-01;Name=Os03t0639600-01;Locus_id=Os03g0639600;Oryzabase Gene Symbol Synonym(s)=OsLSD2;Note=Similar to Zinc-finger protein Lsd1.;Transcript_evidence=AK111569 (DDBJ%2C Best hit);ORF_evidence=Q6ASS2 (UniProt);InterPro=Zinc finger%2C LSD1-type (IPR005735);NIAS_FLcDNA=J013071E13;Oryzabase=19842;Expression=AK111569;TENOR=Os03t0639600-01;KEGG=Os03t0639600-01
Chr03	irgsp1_rep	five_prime_UTR	24578994	24579212	.	-	.	Parent=Os03t0639600-01
Chr03	irgsp1_rep	five_prime_UTR	24578697	24578698	.	-	.	Parent=Os03t0639600-01
Chr03	irgsp1_rep	CDS	24578579	24578696	.	-	0	Parent=Os03t0639600-01
Chr03	irgsp1_rep	CDS	24576589	24576702	.	-	2	Parent=Os03t0639600-01
Chr03	irgsp1_rep	CDS	24575353	24575462	.	-	2	Parent=Os03t0639600-01
Chr03	irgsp1_rep	CDS	24575143	24575250	.	-	0	Parent=Os03t0639600-01
Chr03	irgsp1_rep	CDS	24574985	24575056	.	-	0	Parent=Os03t0639600-01
Chr03	irgsp1_rep	CDS	24574845	24574883	.	-	0	Parent=Os03t0639600-01
Chr03	irgsp1_rep	three_prime_UTR	24574540	24574844	.	-	.	Parent=Os03t0639600-01
Chr03	irgsp1_rep	mRNA	24591421	24596437	.	+	.	ID=Os03t0639700-01;Name=Os03t0639700-01;Locus_id=Os03g0639700;Oryzabase Gene Symbol Synonym(s)=RecA;Note=Similar to protein recA.;Transcript_evidence=AK099587 (DDBJ%2C Best hit);ORF_evidence=NP_001148809.1 (RefSeq);GO=Biological Process: DNA metabolic process (GO:0006259),Biological Process: DNA repair (GO:0006281),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: DNA binding (GO:0003677),Molecular Function: single-stranded DNA binding (GO:0003697),Molecular Function: ATP binding (GO:0005524),Molecular Function: DNA-dependent ATPase activity (GO:0008094),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),DNA recombination and repair protein RecA (IPR013765),DNA recombination/repair protein RecA%2C conserved site (IPR020584),DNA recombination/repair protein RecA%2C monomer-monomer interface (IPR020587),DNA recombination/repair protein RecA/RadB%2C ATP-binding domain (IPR020588),DNA recombination and repair protein RecA%2C C-terminal (IPR023400);NIAS_FLcDNA=J013043C07;Oryzabase=21286;TENOR=Os03t0639700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	24591421	24591421	.	+	.	Parent=Os03t0639700-01
Chr03	irgsp1_rep	CDS	24591422	24591673	.	+	0	Parent=Os03t0639700-01
Chr03	irgsp1_rep	CDS	24592515	24592606	.	+	0	Parent=Os03t0639700-01
Chr03	irgsp1_rep	CDS	24592699	24592774	.	+	1	Parent=Os03t0639700-01
Chr03	irgsp1_rep	CDS	24592927	24592989	.	+	0	Parent=Os03t0639700-01
Chr03	irgsp1_rep	CDS	24593091	24593220	.	+	0	Parent=Os03t0639700-01
Chr03	irgsp1_rep	CDS	24593607	24593692	.	+	2	Parent=Os03t0639700-01
Chr03	irgsp1_rep	CDS	24593783	24593908	.	+	0	Parent=Os03t0639700-01
Chr03	irgsp1_rep	CDS	24593984	24594088	.	+	0	Parent=Os03t0639700-01
Chr03	irgsp1_rep	CDS	24594160	24594216	.	+	0	Parent=Os03t0639700-01
Chr03	irgsp1_rep	CDS	24594301	24594363	.	+	0	Parent=Os03t0639700-01
Chr03	irgsp1_rep	CDS	24594437	24594513	.	+	0	Parent=Os03t0639700-01
Chr03	irgsp1_rep	CDS	24595401	24595473	.	+	1	Parent=Os03t0639700-01
Chr03	irgsp1_rep	CDS	24596089	24596187	.	+	0	Parent=Os03t0639700-01
Chr03	irgsp1_rep	three_prime_UTR	24596188	24596437	.	+	.	Parent=Os03t0639700-01
Chr03	irgsp1_rep	mRNA	24596843	24600376	.	-	.	ID=Os03t0639800-01;Name=Os03t0639800-01;Locus_id=Os03g0639800;Oryzabase Gene Symbol Synonym(s)=OsVPS2%2C VPS2;Oryzabase Gene Name Synonym(s)=VPS2 component of ESCRT-III complex%2C ESCRT-III complex VPS2 component;Note=Snf7 family protein.;Transcript_evidence=AK103237 (DDBJ%2C Best hit);ORF_evidence=NP_001150538.1 (RefSeq);GO=Biological Process: protein transport (GO:0015031);InterPro=Snf7 (IPR005024);NIAS_FLcDNA=J033123F08;Oryzabase=21413;Expression=AK103237;TENOR=Os03t0639800-01;KEGG=Os03t0639800-01
Chr03	irgsp1_rep	five_prime_UTR	24600190	24600376	.	-	.	Parent=Os03t0639800-01
Chr03	irgsp1_rep	CDS	24600156	24600189	.	-	0	Parent=Os03t0639800-01
Chr03	irgsp1_rep	CDS	24599704	24599748	.	-	2	Parent=Os03t0639800-01
Chr03	irgsp1_rep	CDS	24599463	24599497	.	-	2	Parent=Os03t0639800-01
Chr03	irgsp1_rep	CDS	24598717	24598767	.	-	0	Parent=Os03t0639800-01
Chr03	irgsp1_rep	CDS	24598522	24598629	.	-	0	Parent=Os03t0639800-01
Chr03	irgsp1_rep	CDS	24598354	24598422	.	-	0	Parent=Os03t0639800-01
Chr03	irgsp1_rep	CDS	24598173	24598244	.	-	0	Parent=Os03t0639800-01
Chr03	irgsp1_rep	CDS	24597508	24597588	.	-	0	Parent=Os03t0639800-01
Chr03	irgsp1_rep	CDS	24597351	24597386	.	-	0	Parent=Os03t0639800-01
Chr03	irgsp1_rep	CDS	24597187	24597251	.	-	0	Parent=Os03t0639800-01
Chr03	irgsp1_rep	CDS	24596988	24597081	.	-	1	Parent=Os03t0639800-01
Chr03	irgsp1_rep	three_prime_UTR	24596843	24596987	.	-	.	Parent=Os03t0639800-01
Chr03	irgsp1_rep	mRNA	24616417	24617859	.	-	.	ID=Os03t0640000-00;Name=Os03t0640000-00;Locus_id=Os03g0640000;Oryzabase Gene Symbol Synonym(s)=OspPLAIIIbeta%2C pPLAIIIbeta;Oryzabase Gene Name Synonym(s)=Patatin-related phospholipase A III beta;Note=Patatin family protein.;Transcript_evidence=tplb0014i09 (Wheat FLcDNA);ORF_evidence=Q2QMB1 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: metabolic process (GO:0008152);InterPro=Patatin/Phospholipase A2-related (IPR002641),Acyl transferase/acyl hydrolase/lysophospholipase (IPR016035);Oryzabase=19873;TENOR=Os03t0640000-00;KEGG=Os03t0640000-00
Chr03	irgsp1_rep	five_prime_UTR	24617857	24617859	.	-	.	Parent=Os03t0640000-00
Chr03	irgsp1_rep	CDS	24616531	24617856	.	-	0	Parent=Os03t0640000-00
Chr03	irgsp1_rep	three_prime_UTR	24616417	24616530	.	-	.	Parent=Os03t0640000-00
Chr03	irgsp1_rep	mRNA	24621460	24629502	.	-	.	ID=Os03t0640100-01;Name=Os03t0640100-01;Locus_id=Os03g0640100;RAP-DB Gene Symbol Synonym(s)=OsMSI1;RAP-DB Gene Name Synonym(s)=Multicopy Suppressors of the Ira l;Oryzabase Gene Symbol Synonym(s)=OsWD40-79%2C OsMSI1%2C WD40-79%2C MSI1;Note=Rice homolog of AtMSI1%2C Reproductive development;Transcript_evidence=AK059114;ORF_evidence=Q10G81;GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40/YVTN repeat-like-containing domain superfamily (IPR015943),WD40-repeat-containing domain superfamily (IPR036322),Histone-binding protein RBBP4%2C N-terminal (IPR022052),WD40-repeat-containing domain (IPR017986),WD40 repeat (IPR001680),G-protein beta WD-40 repeat (IPR020472),WD40 repeat%2C conserved site (IPR019775);NIAS_FLcDNA=001-022-E06;Manual Curation=September 24%2C 2019;Literature_PMID=31548267;Oryzabase=10760;Expression=AK059114;TENOR=Os03t0640100-01;KEGG=Os03t0640100-01
Chr03	irgsp1_rep	five_prime_UTR	24629343	24629502	.	-	.	Parent=Os03t0640100-01
Chr03	irgsp1_rep	CDS	24628986	24629342	.	-	0	Parent=Os03t0640100-01
Chr03	irgsp1_rep	CDS	24625010	24625336	.	-	0	Parent=Os03t0640100-01
Chr03	irgsp1_rep	CDS	24623783	24623935	.	-	0	Parent=Os03t0640100-01
Chr03	irgsp1_rep	CDS	24622812	24622936	.	-	0	Parent=Os03t0640100-01
Chr03	irgsp1_rep	CDS	24622395	24622490	.	-	1	Parent=Os03t0640100-01
Chr03	irgsp1_rep	CDS	24621598	24621826	.	-	1	Parent=Os03t0640100-01
Chr03	irgsp1_rep	three_prime_UTR	24621460	24621597	.	-	.	Parent=Os03t0640100-01
Chr03	irgsp1_rep	mRNA	24630180	24634746	.	-	.	ID=Os03t0640300-01;Name=Os03t0640300-01;Locus_id=Os03g0640300;Note=Similar to phosphatidylinositol N-acetylglucosaminyltransferase subunit P.;Transcript_evidence=AK241670 (DDBJ%2C Best hit);ORF_evidence=NP_001150876.1 (RefSeq);InterPro=PIG-P (IPR013717);NIAS_FLcDNA=J065192E05;TENOR=Os03t0640300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	24634551	24634746	.	-	.	Parent=Os03t0640300-01
Chr03	irgsp1_rep	five_prime_UTR	24633850	24633895	.	-	.	Parent=Os03t0640300-01
Chr03	irgsp1_rep	CDS	24633574	24633849	.	-	0	Parent=Os03t0640300-01
Chr03	irgsp1_rep	three_prime_UTR	24633560	24633573	.	-	.	Parent=Os03t0640300-01
Chr03	irgsp1_rep	three_prime_UTR	24633354	24633472	.	-	.	Parent=Os03t0640300-01
Chr03	irgsp1_rep	three_prime_UTR	24632734	24633246	.	-	.	Parent=Os03t0640300-01
Chr03	irgsp1_rep	three_prime_UTR	24632515	24632634	.	-	.	Parent=Os03t0640300-01
Chr03	irgsp1_rep	three_prime_UTR	24630586	24630738	.	-	.	Parent=Os03t0640300-01
Chr03	irgsp1_rep	three_prime_UTR	24630180	24630483	.	-	.	Parent=Os03t0640300-01
Chr03	irgsp1_rep	mRNA	24638186	24641449	.	-	.	ID=Os03t0640400-01;Name=Os03t0640400-01;Locus_id=Os03g0640400;RAP-DB Gene Symbol Synonym(s)=LO9-177;Oryzabase Gene Symbol Synonym(s)=LO9-177;Note=KxDL motif-containing protein%2C Component of HLH-bHLH protein complex%2C Control of leaf angle and grain size;Transcript_evidence=AK120523;ORF_evidence=Q6ASS9;InterPro=Uncharacterised domain KxDL (IPR019371);NIAS_FLcDNA=J013126D04;Manual Curation=January 6%2C 2017;Literature_PMID=27879391;Oryzabase=21575;Expression=AK120523;TENOR=Os03t0640400-01;KEGG=Os03t0640400-01
Chr03	irgsp1_rep	five_prime_UTR	24641415	24641449	.	-	.	Parent=Os03t0640400-01
Chr03	irgsp1_rep	CDS	24641302	24641414	.	-	0	Parent=Os03t0640400-01
Chr03	irgsp1_rep	CDS	24638731	24638883	.	-	1	Parent=Os03t0640400-01
Chr03	irgsp1_rep	CDS	24638485	24638590	.	-	1	Parent=Os03t0640400-01
Chr03	irgsp1_rep	three_prime_UTR	24638186	24638484	.	-	.	Parent=Os03t0640400-01
Chr03	irgsp1_rep	mRNA	24651855	24657650	.	-	.	ID=Os03t0640800-01;Name=Os03t0640800-01;Locus_id=Os03g0640800;RAP-DB Gene Symbol Synonym(s)=OSHB4%2C OsHox32%2C HOX32%2C OsHB4%2C Oshox32%2C PHB3;RAP-DB Gene Name Synonym(s)=HOMEODOMAIN CONTAINING PROTEIN 4%2C Homeobox-leucine zipper protein HOX32%2C Homeodomain transcription factor HOX32%2C HD-ZIP protein HOX32;CGSNL Gene Symbol=HB4;CGSNL Gene Name=HOMEODOMAIN CONTAINING PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OSHB4%2C OsHox32%2C HOX32%2C OsHB4%2C Oshox32%2C PHB3;Oryzabase Gene Name Synonym(s)=Homeobox-leucine zipper protein HOX32%2C Homeodomain transcription factor HOX32%2C HD-ZIP protein HOX32%2C rice homeobox gene 32;Note=Class III homeodomain Leu zipper (HD-Zip III) family member%2C Control of plant type architecture and leaf development;Transcript_evidence=AK103284;ORF_evidence=Q6AST1;GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: lipid binding (GO:0008289);InterPro=Homeodomain-like (IPR009057),Homeobox domain (IPR001356),START-like domain (IPR023393),START domain (IPR002913),MEKHLA (IPR013978);NIAS_FLcDNA=J033124M18;Manual Curation=September 30%2C 2016;Literature_PMID=27624698;Oryzabase=8335;Expression=AK103284;TENOR=Os03t0640800-01;KEGG=Os03t0640800-01
Chr03	irgsp1_rep	five_prime_UTR	24657307	24657650	.	-	.	Parent=Os03t0640800-01
Chr03	irgsp1_rep	CDS	24657053	24657306	.	-	0	Parent=Os03t0640800-01
Chr03	irgsp1_rep	CDS	24655967	24656126	.	-	1	Parent=Os03t0640800-01
Chr03	irgsp1_rep	CDS	24655589	24655704	.	-	0	Parent=Os03t0640800-01
Chr03	irgsp1_rep	CDS	24655391	24655481	.	-	1	Parent=Os03t0640800-01
Chr03	irgsp1_rep	CDS	24655208	24655303	.	-	0	Parent=Os03t0640800-01
Chr03	irgsp1_rep	CDS	24655022	24655135	.	-	0	Parent=Os03t0640800-01
Chr03	irgsp1_rep	CDS	24654834	24654917	.	-	0	Parent=Os03t0640800-01
Chr03	irgsp1_rep	CDS	24654535	24654690	.	-	0	Parent=Os03t0640800-01
Chr03	irgsp1_rep	CDS	24654369	24654443	.	-	0	Parent=Os03t0640800-01
Chr03	irgsp1_rep	CDS	24654157	24654263	.	-	0	Parent=Os03t0640800-01
Chr03	irgsp1_rep	CDS	24653883	24654075	.	-	1	Parent=Os03t0640800-01
Chr03	irgsp1_rep	CDS	24653605	24653793	.	-	0	Parent=Os03t0640800-01
Chr03	irgsp1_rep	CDS	24653439	24653519	.	-	0	Parent=Os03t0640800-01
Chr03	irgsp1_rep	CDS	24653218	24653352	.	-	0	Parent=Os03t0640800-01
Chr03	irgsp1_rep	CDS	24652804	24653129	.	-	0	Parent=Os03t0640800-01
Chr03	irgsp1_rep	CDS	24652497	24652602	.	-	1	Parent=Os03t0640800-01
Chr03	irgsp1_rep	CDS	24652250	24652399	.	-	0	Parent=Os03t0640800-01
Chr03	irgsp1_rep	CDS	24652012	24652158	.	-	0	Parent=Os03t0640800-01
Chr03	irgsp1_rep	three_prime_UTR	24651855	24652011	.	-	.	Parent=Os03t0640800-01
Chr03	irgsp1_rep	mRNA	24651848	24654879	.	-	.	ID=Os03t0640800-02;Name=Os03t0640800-02;Locus_id=Os03g0640800;CGSNL Gene Symbol=HB4;CGSNL Gene Name=HOMEODOMAIN CONTAINING PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OSHB4%2C OsHox32%2C HOX32%2C OsHB4%2C Oshox32%2C PHB3;Oryzabase Gene Name Synonym(s)=Homeobox-leucine zipper protein HOX32%2C Homeodomain transcription factor HOX32%2C HD-ZIP protein HOX32%2C rice homeobox gene 32;Note=Similar to cDNA clone:J033124M18%2C full insert sequence.;Transcript_evidence=AK060584 (DDBJ%2C Best hit);ORF_evidence=B7EUE5 (UniProt);InterPro=Lipid-binding START (IPR002913),MEKHLA (IPR013978),START-like domain (IPR023393);NIAS_FLcDNA=001-023-H08;Oryzabase=8335;Expression=AK060584;TENOR=Os03t0640800-02;KEGG=Os03t0640800-02
Chr03	irgsp1_rep	five_prime_UTR	24654879	24654879	.	-	.	Parent=Os03t0640800-02
Chr03	irgsp1_rep	CDS	24654834	24654878	.	-	0	Parent=Os03t0640800-02
Chr03	irgsp1_rep	CDS	24654535	24654690	.	-	0	Parent=Os03t0640800-02
Chr03	irgsp1_rep	CDS	24654369	24654443	.	-	0	Parent=Os03t0640800-02
Chr03	irgsp1_rep	CDS	24654157	24654263	.	-	0	Parent=Os03t0640800-02
Chr03	irgsp1_rep	CDS	24653883	24654075	.	-	1	Parent=Os03t0640800-02
Chr03	irgsp1_rep	CDS	24653605	24653793	.	-	0	Parent=Os03t0640800-02
Chr03	irgsp1_rep	CDS	24653439	24653519	.	-	0	Parent=Os03t0640800-02
Chr03	irgsp1_rep	CDS	24653218	24653352	.	-	0	Parent=Os03t0640800-02
Chr03	irgsp1_rep	CDS	24652804	24653129	.	-	0	Parent=Os03t0640800-02
Chr03	irgsp1_rep	CDS	24652497	24652602	.	-	1	Parent=Os03t0640800-02
Chr03	irgsp1_rep	CDS	24652250	24652399	.	-	0	Parent=Os03t0640800-02
Chr03	irgsp1_rep	CDS	24652012	24652158	.	-	0	Parent=Os03t0640800-02
Chr03	irgsp1_rep	three_prime_UTR	24651848	24652011	.	-	.	Parent=Os03t0640800-02
Chr03	irgsp1_rep	mRNA	24651873	24653685	.	-	.	ID=Os03t0640800-03;Name=Os03t0640800-03;Locus_id=Os03g0640800;CGSNL Gene Symbol=HB4;CGSNL Gene Name=HOMEODOMAIN CONTAINING PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OSHB4%2C OsHox32%2C HOX32%2C OsHB4%2C Oshox32%2C PHB3;Oryzabase Gene Name Synonym(s)=Homeobox-leucine zipper protein HOX32%2C Homeodomain transcription factor HOX32%2C HD-ZIP protein HOX32%2C rice homeobox gene 32;Note=Similar to cDNA clone:J033124M18%2C full insert sequence.;Transcript_evidence=AK101425 (DDBJ%2C Best hit);ORF_evidence=B7EUE5 (UniProt);InterPro=MEKHLA (IPR013978);NIAS_FLcDNA=J033038E17;Oryzabase=8335;Expression=AK101425;TENOR=Os03t0640800-03;KEGG=Os03t0640800-03
Chr03	irgsp1_rep	CDS	24653605	24653685	.	-	0	Parent=Os03t0640800-03
Chr03	irgsp1_rep	CDS	24653439	24653519	.	-	0	Parent=Os03t0640800-03
Chr03	irgsp1_rep	CDS	24653218	24653352	.	-	0	Parent=Os03t0640800-03
Chr03	irgsp1_rep	CDS	24652804	24653129	.	-	0	Parent=Os03t0640800-03
Chr03	irgsp1_rep	CDS	24652497	24652602	.	-	1	Parent=Os03t0640800-03
Chr03	irgsp1_rep	CDS	24652250	24652399	.	-	0	Parent=Os03t0640800-03
Chr03	irgsp1_rep	CDS	24652012	24652158	.	-	0	Parent=Os03t0640800-03
Chr03	irgsp1_rep	three_prime_UTR	24651873	24652011	.	-	.	Parent=Os03t0640800-03
Chr03	irgsp1_rep	mRNA	24652014	24657602	.	+	.	ID=Os03t0640825-00;Name=Os03t0640825-00;Locus_id=Os03g0640825;Note=Hypothetical protein.;Transcript_evidence=tplb0037d04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0640825-00
Chr03	irgsp1_rep	five_prime_UTR	24652014	24652146	.	+	.	Parent=Os03t0640825-00
Chr03	irgsp1_rep	five_prime_UTR	24652243	24652406	.	+	.	Parent=Os03t0640825-00
Chr03	irgsp1_rep	five_prime_UTR	24652503	24652595	.	+	.	Parent=Os03t0640825-00
Chr03	irgsp1_rep	five_prime_UTR	24652798	24653122	.	+	.	Parent=Os03t0640825-00
Chr03	irgsp1_rep	five_prime_UTR	24653205	24653348	.	+	.	Parent=Os03t0640825-00
Chr03	irgsp1_rep	five_prime_UTR	24653435	24653519	.	+	.	Parent=Os03t0640825-00
Chr03	irgsp1_rep	five_prime_UTR	24653605	24653786	.	+	.	Parent=Os03t0640825-00
Chr03	irgsp1_rep	five_prime_UTR	24653876	24654083	.	+	.	Parent=Os03t0640825-00
Chr03	irgsp1_rep	five_prime_UTR	24654166	24654265	.	+	.	Parent=Os03t0640825-00
Chr03	irgsp1_rep	five_prime_UTR	24654371	24654442	.	+	.	Parent=Os03t0640825-00
Chr03	irgsp1_rep	five_prime_UTR	24654534	24654702	.	+	.	Parent=Os03t0640825-00
Chr03	irgsp1_rep	five_prime_UTR	24654840	24654907	.	+	.	Parent=Os03t0640825-00
Chr03	irgsp1_rep	five_prime_UTR	24655013	24655133	.	+	.	Parent=Os03t0640825-00
Chr03	irgsp1_rep	five_prime_UTR	24655206	24655277	.	+	.	Parent=Os03t0640825-00
Chr03	irgsp1_rep	CDS	24655278	24655303	.	+	0	Parent=Os03t0640825-00
Chr03	irgsp1_rep	CDS	24655391	24655483	.	+	1	Parent=Os03t0640825-00
Chr03	irgsp1_rep	CDS	24655593	24655690	.	+	1	Parent=Os03t0640825-00
Chr03	irgsp1_rep	CDS	24655953	24656122	.	+	2	Parent=Os03t0640825-00
Chr03	irgsp1_rep	CDS	24657049	24657396	.	+	0	Parent=Os03t0640825-00
Chr03	irgsp1_rep	three_prime_UTR	24657397	24657602	.	+	.	Parent=Os03t0640825-00
Chr03	irgsp1_rep	mRNA	24692974	24693660	.	-	.	ID=Os03t0641200-00;Name=Os03t0641200-00;Locus_id=Os03g0641200;Oryzabase Gene Symbol Synonym(s)=OsCAT3;Oryzabase Gene Name Synonym(s)=cationic amino acid transporter 3;Note=Similar to cationic amino acid transporter 4.;Transcript_evidence=CT835261 (DDBJ%2C Best hit);ORF_evidence=Q2QM92 (UniProt);GO=Biological Process: amino acid transmembrane transport (GO:0003333),Cellular Component: membrane (GO:0016020),Molecular Function: amino acid transmembrane transporter activity (GO:0015171);InterPro=Amino acid/polyamine transporter I (IPR002293),Cationic amino acid transporter (IPR015606);Oryzabase=18537;TENOR=Os03t0641200-00;KEGG=Os03t0641200-00
Chr03	irgsp1_rep	CDS	24693301	24693660	.	-	0	Parent=Os03t0641200-00
Chr03	irgsp1_rep	three_prime_UTR	24692974	24693300	.	-	.	Parent=Os03t0641200-00
Chr03	irgsp1_rep	mRNA	24693330	24698163	.	+	.	ID=Os03t0641250-00;Name=Os03t0641250-00;Locus_id=Os03g0641250;Note=Hypothetical gene.;Transcript_evidence=EU957609 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0641250-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	24693330	24693330	.	+	.	Parent=Os03t0641250-00
Chr03	irgsp1_rep	CDS	24693331	24694071	.	+	0	Parent=Os03t0641250-00
Chr03	irgsp1_rep	three_prime_UTR	24694072	24694669	.	+	.	Parent=Os03t0641250-00
Chr03	irgsp1_rep	three_prime_UTR	24697748	24698163	.	+	.	Parent=Os03t0641250-00
Chr03	irgsp1_rep	mRNA	24705008	24706533	.	-	.	ID=Os03t0641300-01;Name=Os03t0641300-01;Locus_id=Os03g0641300;Note=Hypothetical conserved gene.;Transcript_evidence=AK073710 (DDBJ%2C Best hit);ORF_evidence=B9FX16 (UniProt);NIAS_FLcDNA=J033061L21;Expression=AK073710;TENOR=Os03t0641300-01;KEGG=Os03t0641300-01
Chr03	irgsp1_rep	five_prime_UTR	24706180	24706533	.	-	.	Parent=Os03t0641300-01
Chr03	irgsp1_rep	CDS	24705964	24706179	.	-	0	Parent=Os03t0641300-01
Chr03	irgsp1_rep	three_prime_UTR	24705008	24705963	.	-	.	Parent=Os03t0641300-01
Chr03	irgsp1_rep	mRNA	24721230	24723141	.	+	.	ID=Os03t0641500-01;Name=Os03t0641500-01;Locus_id=Os03g0641500;Oryzabase Gene Symbol Synonym(s)=OsLTPx1%2C OsLtpY.1;Oryzabase Gene Name Synonym(s)=type X non-specific lipid transfer protein 1%2C non-specific lipid transfer protein x1%2C lipid transfer protein x1;Note=Plant lipid transfer protein/hydrophobic protein%2C helical domain domain containing protein.;Transcript_evidence=AK062268 (DDBJ%2C Best hit);ORF_evidence=Q6AST8 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=001-100-A04;Oryzabase=13554;Expression=AK062268;TENOR=Os03t0641500-01;KEGG=Os03t0641500-01
Chr03	irgsp1_rep	five_prime_UTR	24721230	24721338	.	+	.	Parent=Os03t0641500-01
Chr03	irgsp1_rep	CDS	24721339	24721709	.	+	0	Parent=Os03t0641500-01
Chr03	irgsp1_rep	CDS	24722798	24722828	.	+	1	Parent=Os03t0641500-01
Chr03	irgsp1_rep	three_prime_UTR	24722829	24723141	.	+	.	Parent=Os03t0641500-01
Chr03	irgsp1_rep	mRNA	24727395	24729519	.	+	.	ID=Os03t0641700-01;Name=Os03t0641700-01;Locus_id=Os03g0641700;Oryzabase Gene Symbol Synonym(s)=OsMED19b%2C MED19b%2C OsMed19_1%2C Med19_1;Oryzabase Gene Name Synonym(s)=Mediator complex protein OsMED19b%2C Mediator 19_1;Note=Similar to predicted protein.;Transcript_evidence=AK120708 (DDBJ%2C Best hit);ORF_evidence=B9F9X2 (UniProt);NIAS_FLcDNA=J023001E18;Oryzabase=18700;Expression=AK120708;TENOR=Os03t0641700-01;KEGG=Os03t0641700-01
Chr03	irgsp1_rep	five_prime_UTR	24727395	24727578	.	+	.	Parent=Os03t0641700-01
Chr03	irgsp1_rep	five_prime_UTR	24728296	24728321	.	+	.	Parent=Os03t0641700-01
Chr03	irgsp1_rep	CDS	24728322	24728367	.	+	0	Parent=Os03t0641700-01
Chr03	irgsp1_rep	CDS	24728970	24729256	.	+	2	Parent=Os03t0641700-01
Chr03	irgsp1_rep	CDS	24729376	24729519	.	+	0	Parent=Os03t0641700-01
Chr03	irgsp1_rep	mRNA	24727408	24732318	.	+	.	ID=Os03t0641700-02;Name=Os03t0641700-02;Locus_id=Os03g0641700;Oryzabase Gene Symbol Synonym(s)=OsMED19b%2C MED19b%2C OsMed19_1%2C Med19_1;Oryzabase Gene Name Synonym(s)=Mediator complex protein OsMED19b%2C Mediator 19_1;Note=Conserved hypothetical protein.;Transcript_evidence=AK070760 (DDBJ%2C Best hit);ORF_evidence=B9F9X2 (UniProt);NIAS_FLcDNA=J023064C07;Oryzabase=18700;Expression=AK070760;TENOR=Os03t0641700-02;KEGG=Os03t0641700-02
Chr03	irgsp1_rep	five_prime_UTR	24727408	24727578	.	+	.	Parent=Os03t0641700-02
Chr03	irgsp1_rep	five_prime_UTR	24728296	24728321	.	+	.	Parent=Os03t0641700-02
Chr03	irgsp1_rep	CDS	24728322	24728367	.	+	0	Parent=Os03t0641700-02
Chr03	irgsp1_rep	CDS	24728970	24729256	.	+	2	Parent=Os03t0641700-02
Chr03	irgsp1_rep	CDS	24729376	24729627	.	+	0	Parent=Os03t0641700-02
Chr03	irgsp1_rep	CDS	24729717	24729771	.	+	0	Parent=Os03t0641700-02
Chr03	irgsp1_rep	CDS	24729866	24729888	.	+	2	Parent=Os03t0641700-02
Chr03	irgsp1_rep	three_prime_UTR	24729889	24730024	.	+	.	Parent=Os03t0641700-02
Chr03	irgsp1_rep	three_prime_UTR	24731845	24732318	.	+	.	Parent=Os03t0641700-02
Chr03	irgsp1_rep	mRNA	24744077	24745553	.	+	.	ID=Os03t0642300-00;Name=Os03t0642300-00;Locus_id=Os03g0642300;CGSNL Gene Symbol=PIDB;CGSNL Gene Name=PINOID B;Oryzabase Gene Symbol Synonym(s)=OsPIDb%2C PIDb;Oryzabase Gene Name Synonym(s)=PINOID b;Note=Protein kinase-like domain containing protein.;Transcript_evidence=BT085965 (DDBJ);ORF_evidence=NP_001106051.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);Oryzabase=22828;TENOR=Os03t0642300-00;KEGG=Os03t0642300-00 (EC:2.7.11.1)
Chr03	irgsp1_rep	five_prime_UTR	24744077	24744167	.	+	.	Parent=Os03t0642300-00
Chr03	irgsp1_rep	CDS	24744168	24745553	.	+	0	Parent=Os03t0642300-00
Chr03	irgsp1_rep	mRNA	24754578	24755402	.	+	.	ID=Os03t0642450-00;Name=Os03t0642450-00;Locus_id=Os03g0642450;Note=Hypothetical conserved gene.;Transcript_evidence=CT835137 (DDBJ%2C Best hit);ORF_evidence=NP_001055980.1 (RefSeq);TENOR=Os03t0642450-00;KEGG=Os03t0642450-00
Chr03	irgsp1_rep	five_prime_UTR	24754578	24754754	.	+	.	Parent=Os03t0642450-00
Chr03	irgsp1_rep	CDS	24754755	24754985	.	+	0	Parent=Os03t0642450-00
Chr03	irgsp1_rep	three_prime_UTR	24754986	24755007	.	+	.	Parent=Os03t0642450-00
Chr03	irgsp1_rep	three_prime_UTR	24755139	24755402	.	+	.	Parent=Os03t0642450-00
Chr03	irgsp1_rep	mRNA	24759259	24763597	.	-	.	ID=Os03t0642600-00;Name=Os03t0642600-00;Locus_id=Os03g0642600;CGSNL Gene Symbol=RLCK114;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 114;Oryzabase Gene Symbol Synonym(s)=OsRLCK114;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 114;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=AK366256 (DDBJ);ORF_evidence=Q2QM75 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18820;TENOR=Os03t0642600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	24762634	24763597	.	-	0	Parent=Os03t0642600-00
Chr03	irgsp1_rep	CDS	24759259	24760388	.	-	2	Parent=Os03t0642600-00
Chr03	irgsp1_rep	mRNA	24768026	24782984	.	-	.	ID=Os03t0642900-00;Name=Os03t0642900-00;Locus_id=Os03g0642900;Note=Similar to Hydrolase-like protein.;Transcript_evidence=BT055664 (DDBJ);ORF_evidence=B4FSG2 (UniProt);TENOR=Os03t0642900-00;KEGG=Os03t0642900-00
Chr03	irgsp1_rep	CDS	24782800	24782984	.	-	0	Parent=Os03t0642900-00
Chr03	irgsp1_rep	CDS	24781893	24782028	.	-	1	Parent=Os03t0642900-00
Chr03	irgsp1_rep	CDS	24781106	24781233	.	-	0	Parent=Os03t0642900-00
Chr03	irgsp1_rep	CDS	24780868	24781015	.	-	1	Parent=Os03t0642900-00
Chr03	irgsp1_rep	CDS	24780674	24780779	.	-	0	Parent=Os03t0642900-00
Chr03	irgsp1_rep	CDS	24768645	24768712	.	-	2	Parent=Os03t0642900-00
Chr03	irgsp1_rep	CDS	24768487	24768543	.	-	0	Parent=Os03t0642900-00
Chr03	irgsp1_rep	three_prime_UTR	24768464	24768486	.	-	.	Parent=Os03t0642900-00
Chr03	irgsp1_rep	three_prime_UTR	24768184	24768377	.	-	.	Parent=Os03t0642900-00
Chr03	irgsp1_rep	three_prime_UTR	24768026	24768090	.	-	.	Parent=Os03t0642900-00
Chr03	irgsp1_rep	mRNA	24784051	24786767	.	-	.	ID=Os03t0643000-00;Name=Os03t0643000-00;Locus_id=Os03g0643000;Note=Similar to Hydrolase-like protein.;Transcript_evidence=AK366873 (DDBJ);ORF_evidence=B4FSG2 (UniProt);TENOR=Os03t0643000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	24786570	24786767	.	-	0	Parent=Os03t0643000-00
Chr03	irgsp1_rep	CDS	24785664	24785813	.	-	0	Parent=Os03t0643000-00
Chr03	irgsp1_rep	CDS	24785554	24785577	.	-	0	Parent=Os03t0643000-00
Chr03	irgsp1_rep	three_prime_UTR	24785442	24785553	.	-	.	Parent=Os03t0643000-00
Chr03	irgsp1_rep	three_prime_UTR	24785249	24785354	.	-	.	Parent=Os03t0643000-00
Chr03	irgsp1_rep	three_prime_UTR	24784492	24784755	.	-	.	Parent=Os03t0643000-00
Chr03	irgsp1_rep	three_prime_UTR	24784213	24784402	.	-	.	Parent=Os03t0643000-00
Chr03	irgsp1_rep	three_prime_UTR	24784051	24784119	.	-	.	Parent=Os03t0643000-00
Chr03	irgsp1_rep	mRNA	24787445	24792638	.	+	.	ID=Os03t0643050-00;Name=Os03t0643050-00;Locus_id=Os03g0643050;Note=Transposase%2C IS4-like domain containing protein.;Transcript_evidence=EU953241 (DDBJ);ORF_evidence=NP_001176912.1 (RefSeq);GO=Biological Process: transposition%2C DNA-mediated (GO:0006313),Molecular Function: DNA binding (GO:0003677),Molecular Function: transposase activity (GO:0004803);InterPro=Transposase%2C IS4-like (IPR002559);TENOR=Os03t0643050-00
Chr03	irgsp1_rep	five_prime_UTR	24787445	24787797	.	+	.	Parent=Os03t0643050-00
Chr03	irgsp1_rep	five_prime_UTR	24791836	24791936	.	+	.	Parent=Os03t0643050-00
Chr03	irgsp1_rep	CDS	24791937	24792638	.	+	0	Parent=Os03t0643050-00
Chr03	irgsp1_rep	mRNA	24792645	24794517	.	-	.	ID=Os03t0643100-01;Name=Os03t0643100-01;Locus_id=Os03g0643100;CGSNL Gene Symbol=MSL16;CGSNL Gene Name=MYB/SANT-LIKE 16;Oryzabase Gene Symbol Synonym(s)=OsMSL16;Oryzabase Gene Name Synonym(s)=Myb/SANT-LIKE 16;Note=Homeodomain-like containing protein.;Transcript_evidence=AK106587 (DDBJ%2C Best hit);ORF_evidence=Q60DP5 (UniProt);InterPro=Myb/SANT-like domain (IPR024752);NIAS_FLcDNA=002-111-F01;Oryzabase=22936;Expression=AK106587;TENOR=Os03t0643100-01;KEGG=Os03t0643100-01
Chr03	irgsp1_rep	five_prime_UTR	24794517	24794517	.	-	.	Parent=Os03t0643100-01
Chr03	irgsp1_rep	CDS	24794386	24794516	.	-	0	Parent=Os03t0643100-01
Chr03	irgsp1_rep	CDS	24794047	24794189	.	-	1	Parent=Os03t0643100-01
Chr03	irgsp1_rep	CDS	24793563	24793946	.	-	2	Parent=Os03t0643100-01
Chr03	irgsp1_rep	CDS	24792885	24793468	.	-	2	Parent=Os03t0643100-01
Chr03	irgsp1_rep	three_prime_UTR	24792645	24792884	.	-	.	Parent=Os03t0643100-01
Chr03	irgsp1_rep	mRNA	24804681	24807161	.	-	.	ID=Os03t0643250-00;Name=Os03t0643250-00;Locus_id=Os03g0643250;Note=Similar to Hydrolase-like protein.;Transcript_evidence=EU969825 (DDBJ);ORF_evidence=B4FSG2 (UniProt);TENOR=Os03t0643250-00;KEGG=Os03t0643250-00
Chr03	irgsp1_rep	CDS	24807013	24807161	.	-	0	Parent=Os03t0643250-00
Chr03	irgsp1_rep	CDS	24806408	24806543	.	-	1	Parent=Os03t0643250-00
Chr03	irgsp1_rep	CDS	24806180	24806307	.	-	0	Parent=Os03t0643250-00
Chr03	irgsp1_rep	CDS	24805939	24806086	.	-	1	Parent=Os03t0643250-00
Chr03	irgsp1_rep	CDS	24805744	24805849	.	-	0	Parent=Os03t0643250-00
Chr03	irgsp1_rep	CDS	24805300	24805367	.	-	2	Parent=Os03t0643250-00
Chr03	irgsp1_rep	CDS	24805162	24805197	.	-	0	Parent=Os03t0643250-00
Chr03	irgsp1_rep	CDS	24804826	24804935	.	-	0	Parent=Os03t0643250-00
Chr03	irgsp1_rep	CDS	24804686	24804743	.	-	1	Parent=Os03t0643250-00
Chr03	irgsp1_rep	three_prime_UTR	24804681	24804685	.	-	.	Parent=Os03t0643250-00
Chr03	irgsp1_rep	mRNA	24810090	24818037	.	-	.	ID=Os03t0643300-02;Name=Os03t0643300-02;Locus_id=Os03g0643300;RAP-DB Gene Symbol Synonym(s)=OsOAT;RAP-DB Gene Name Synonym(s)=ornithine delta-aminotransferase%2C ornithine aminotransferase;CGSNL Gene Symbol=OAT;CGSNL Gene Name=ORNITHINE DELTA-AMINOTRANSFERASE;Oryzabase Gene Symbol Synonym(s)=OsOAT%2C delta-OAT;Oryzabase Gene Name Synonym(s)=ornithine delta-aminotransferase%2C ornithine aminotransferase;Note=Ornithine delta-aminotransferase%2C Abiotic stress tolerance%2C Nitrogen reutilization%2C Floret development and seed setting;Transcript_evidence=AK099445;ORF_evidence=Q10G56;GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: transaminase activity (GO:0008483),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferase class-III (IPR005814),Ornithine aminotransferase (IPR010164),Pyridoxal phosphate-dependent transferase (IPR015424),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422);NIAS_FLcDNA=J013021G10;Manual Curation=November 19%2C 2018;Literature_PMID=30144334,23116672;Oryzabase=12136;Expression=AK099445;TENOR=Os03t0643300-02;KEGG=Os03t0643300-02 (EC:2.6.1.13)
Chr03	irgsp1_rep	five_prime_UTR	24817889	24818037	.	-	.	Parent=Os03t0643300-02
Chr03	irgsp1_rep	CDS	24817731	24817888	.	-	0	Parent=Os03t0643300-02
Chr03	irgsp1_rep	CDS	24816884	24816992	.	-	1	Parent=Os03t0643300-02
Chr03	irgsp1_rep	CDS	24816505	24816735	.	-	0	Parent=Os03t0643300-02
Chr03	irgsp1_rep	CDS	24815933	24816092	.	-	0	Parent=Os03t0643300-02
Chr03	irgsp1_rep	CDS	24815794	24815849	.	-	2	Parent=Os03t0643300-02
Chr03	irgsp1_rep	CDS	24815127	24815279	.	-	0	Parent=Os03t0643300-02
Chr03	irgsp1_rep	CDS	24814896	24814993	.	-	0	Parent=Os03t0643300-02
Chr03	irgsp1_rep	CDS	24814605	24814685	.	-	1	Parent=Os03t0643300-02
Chr03	irgsp1_rep	CDS	24814255	24814488	.	-	1	Parent=Os03t0643300-02
Chr03	irgsp1_rep	CDS	24810332	24810473	.	-	1	Parent=Os03t0643300-02
Chr03	irgsp1_rep	three_prime_UTR	24810090	24810331	.	-	.	Parent=Os03t0643300-02
Chr03	irgsp1_rep	mRNA	24811805	24814017	.	+	.	ID=Os03t0643433-00;Name=Os03t0643433-00;Locus_id=Os03g0643433;Note=Similar to J013022N21%2C full insert sequence.;Transcript_evidence=EU948995 (DDBJ);ORF_evidence=B7EAX3 (UniProt);GO=Biological Process: RNA-dependent DNA replication (GO:0006278),Molecular Function: RNA binding (GO:0003723),Molecular Function: RNA-directed DNA polymerase activity (GO:0003964);InterPro=Reverse transcriptase (IPR000477);TENOR=Os03t0643433-00
Chr03	irgsp1_rep	CDS	24811805	24813686	.	+	0	Parent=Os03t0643433-00
Chr03	irgsp1_rep	CDS	24813878	24813927	.	+	2	Parent=Os03t0643433-00
Chr03	irgsp1_rep	three_prime_UTR	24813928	24814017	.	+	.	Parent=Os03t0643433-00
Chr03	irgsp1_rep	mRNA	24822798	24823019	.	+	.	ID=Os03t0643522-00;Name=Os03t0643522-00;Locus_id=Os03g0643522;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10G55 (UniProt);TENOR=Os03t0643522-00
Chr03	irgsp1_rep	CDS	24822798	24823019	.	+	0	Parent=Os03t0643522-00
Chr03	irgsp1_rep	mRNA	24823190	24823465	.	-	.	ID=Os03t0643611-00;Name=Os03t0643611-00;Locus_id=Os03g0643611;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os03t0643611-00
Chr03	irgsp1_rep	CDS	24823190	24823465	.	-	0	Parent=Os03t0643611-00
Chr03	irgsp1_rep	mRNA	24825376	24826577	.	-	.	ID=Os03t0643700-01;Name=Os03t0643700-01;Locus_id=Os03g0643700;CGSNL Gene Symbol=GSTU44;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 44;Oryzabase Gene Symbol Synonym(s)=OsGSTU44;Oryzabase Gene Name Synonym(s)=glutathione transferase U44;Note=Similar to GST6 protein (EC 2.5.1.18).;Transcript_evidence=AK110550 (DDBJ%2C Best hit);ORF_evidence=NP_001105714.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=002-168-C01;Oryzabase=9561;Expression=AK110550;TENOR=Os03t0643700-01;KEGG=Os03t0643700-01 (EC:2.5.1.18)
Chr03	irgsp1_rep	five_prime_UTR	24826489	24826577	.	-	.	Parent=Os03t0643700-01
Chr03	irgsp1_rep	CDS	24825790	24826488	.	-	0	Parent=Os03t0643700-01
Chr03	irgsp1_rep	three_prime_UTR	24825376	24825789	.	-	.	Parent=Os03t0643700-01
Chr03	irgsp1_rep	mRNA	24825667	24829641	.	+	.	ID=Os03t0643800-00;Name=Os03t0643800-00;Locus_id=Os03g0643800;Note=Similar to hydroquinone glucosyltransferase.;Transcript_evidence=FP097203 (DDBJ);ORF_evidence=NP_001148283.1 (RefSeq);TENOR=Os03t0643800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	24825667	24826167	.	+	0	Parent=Os03t0643800-00
Chr03	irgsp1_rep	CDS	24828621	24828830	.	+	0	Parent=Os03t0643800-00
Chr03	irgsp1_rep	three_prime_UTR	24828831	24829641	.	+	.	Parent=Os03t0643800-00
Chr03	irgsp1_rep	mRNA	24833917	24835197	.	-	.	ID=Os03t0643900-01;Name=Os03t0643900-01;Locus_id=Os03g0643900;Note=Conserved hypothetical protein.;Transcript_evidence=AK069402 (DDBJ%2C Best hit);ORF_evidence=B9F0M2 (UniProt);NIAS_FLcDNA=J023011C17;TENOR=Os03t0643900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	24835172	24835197	.	-	.	Parent=Os03t0643900-01
Chr03	irgsp1_rep	CDS	24834716	24835171	.	-	0	Parent=Os03t0643900-01
Chr03	irgsp1_rep	three_prime_UTR	24833917	24834715	.	-	.	Parent=Os03t0643900-01
Chr03	irgsp1_rep	mRNA	24835605	24841302	.	+	.	ID=Os03t0644000-01;Name=Os03t0644000-01;Locus_id=Os03g0644000;RAP-DB Gene Symbol Synonym(s)=ATG6B%2C OsATG6b%2C OsATG6c;RAP-DB Gene Name Synonym(s)=AUTOPHAGY ASSOCIATED GENE 6B%2C autophagy 6b;CGSNL Gene Symbol=ATG6B;CGSNL Gene Name=AUTOPHAGY ASSOCIATED GENE 6B;Oryzabase Gene Symbol Synonym(s)=OsATG6b%2C OsATG6c;Oryzabase Gene Name Synonym(s)=autophagy 6b;Note=ATG6/Beclin-1 protein%2C Abiotic stresses (heat%2Ccold and drought) and hormone (abscisic acid) response;Transcript_evidence=AK099664,AK066359;ORF_evidence=Q60DN7;GO=Biological Process: autophagy (GO:0006914);InterPro=Atg6/Beclin (IPR007243);NIAS_FLcDNA=J013066P07, J013066O06;Manual Curation=March 7%2C 2017;Literature_PMID=22930426;Oryzabase=9641;Expression=AK099664;TENOR=Os03t0644000-01;KEGG=Os03t0644000-01
Chr03	irgsp1_rep	five_prime_UTR	24835605	24835868	.	+	.	Parent=Os03t0644000-01
Chr03	irgsp1_rep	five_prime_UTR	24835980	24836013	.	+	.	Parent=Os03t0644000-01
Chr03	irgsp1_rep	CDS	24836014	24836170	.	+	0	Parent=Os03t0644000-01
Chr03	irgsp1_rep	CDS	24836381	24836733	.	+	2	Parent=Os03t0644000-01
Chr03	irgsp1_rep	CDS	24836959	24837129	.	+	0	Parent=Os03t0644000-01
Chr03	irgsp1_rep	CDS	24837471	24837595	.	+	0	Parent=Os03t0644000-01
Chr03	irgsp1_rep	CDS	24838100	24838148	.	+	1	Parent=Os03t0644000-01
Chr03	irgsp1_rep	CDS	24838830	24838988	.	+	0	Parent=Os03t0644000-01
Chr03	irgsp1_rep	CDS	24839126	24839211	.	+	0	Parent=Os03t0644000-01
Chr03	irgsp1_rep	CDS	24839656	24839727	.	+	1	Parent=Os03t0644000-01
Chr03	irgsp1_rep	CDS	24840185	24840334	.	+	1	Parent=Os03t0644000-01
Chr03	irgsp1_rep	CDS	24840616	24840799	.	+	1	Parent=Os03t0644000-01
Chr03	irgsp1_rep	three_prime_UTR	24840800	24841302	.	+	.	Parent=Os03t0644000-01
Chr03	irgsp1_rep	mRNA	24843343	24845622	.	-	.	ID=Os03t0644200-01;Name=Os03t0644200-01;Locus_id=Os03g0644200;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK073773 (DDBJ%2C Best hit);ORF_evidence=B6SWY6 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033066I06;Expression=AK073773;TENOR=Os03t0644200-01;KEGG=Os03t0644200-01
Chr03	irgsp1_rep	five_prime_UTR	24845346	24845622	.	-	.	Parent=Os03t0644200-01
Chr03	irgsp1_rep	CDS	24843495	24845345	.	-	0	Parent=Os03t0644200-01
Chr03	irgsp1_rep	three_prime_UTR	24843343	24843494	.	-	.	Parent=Os03t0644200-01
Chr03	irgsp1_rep	mRNA	24850181	24854377	.	-	.	ID=Os03t0644400-01;Name=Os03t0644400-01;Locus_id=Os03g0644400;RAP-DB Gene Symbol Synonym(s)=OsProT2%2C OsProT;RAP-DB Gene Name Synonym(s)=Proline transporter 2;CGSNL Gene Symbol=PROT;CGSNL Gene Name=PROLINE TRANSPORTER;Oryzabase Gene Symbol Synonym(s)=OsProT%2C ProT%2C OsProT2%2C ProT2;Oryzabase Gene Name Synonym(s)=proline transporter%2C proline transporter 2;Note=Proline transporter;Transcript_evidence=AK067118;ORF_evidence=Q60DN5;InterPro=Amino acid transporter%2C transmembrane domain (IPR013057);NIAS_FLcDNA=J013096E03;Manual Curation=November 12%2C 2019;Literature_PMID=31707526,10945345;Oryzabase=12118;Expression=AK067118;TENOR=Os03t0644400-01;KEGG=Os03t0644400-01
Chr03	irgsp1_rep	five_prime_UTR	24853815	24854377	.	-	.	Parent=Os03t0644400-01
Chr03	irgsp1_rep	CDS	24853809	24853814	.	-	0	Parent=Os03t0644400-01
Chr03	irgsp1_rep	CDS	24853029	24853212	.	-	0	Parent=Os03t0644400-01
Chr03	irgsp1_rep	CDS	24852319	24852543	.	-	2	Parent=Os03t0644400-01
Chr03	irgsp1_rep	CDS	24851906	24852000	.	-	2	Parent=Os03t0644400-01
Chr03	irgsp1_rep	CDS	24851521	24851710	.	-	0	Parent=Os03t0644400-01
Chr03	irgsp1_rep	CDS	24851286	24851410	.	-	2	Parent=Os03t0644400-01
Chr03	irgsp1_rep	CDS	24850993	24851208	.	-	0	Parent=Os03t0644400-01
Chr03	irgsp1_rep	CDS	24850473	24850853	.	-	0	Parent=Os03t0644400-01
Chr03	irgsp1_rep	three_prime_UTR	24850181	24850472	.	-	.	Parent=Os03t0644400-01
Chr03	irgsp1_rep	mRNA	24850198	24853211	.	-	.	ID=Os03t0644400-02;Name=Os03t0644400-02;Locus_id=Os03g0644400;CGSNL Gene Symbol=PROT;CGSNL Gene Name=PROLINE TRANSPORTER;Oryzabase Gene Symbol Synonym(s)=OsProT%2C ProT%2C OsProT2%2C ProT2;Oryzabase Gene Name Synonym(s)=proline transporter%2C proline transporter 2;Note=Similar to Amino acid permease.;Transcript_evidence=AK062005 (DDBJ%2C Best hit);ORF_evidence=Q9LUH7 (UniProt);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=001-043-D10;Oryzabase=12118;Expression=AK062005;TENOR=Os03t0644400-02;KEGG=Os03t0644400-02
Chr03	irgsp1_rep	five_prime_UTR	24853210	24853211	.	-	.	Parent=Os03t0644400-02
Chr03	irgsp1_rep	CDS	24853029	24853209	.	-	0	Parent=Os03t0644400-02
Chr03	irgsp1_rep	CDS	24852319	24852543	.	-	2	Parent=Os03t0644400-02
Chr03	irgsp1_rep	CDS	24851906	24852000	.	-	2	Parent=Os03t0644400-02
Chr03	irgsp1_rep	CDS	24851521	24851710	.	-	0	Parent=Os03t0644400-02
Chr03	irgsp1_rep	CDS	24851286	24851410	.	-	2	Parent=Os03t0644400-02
Chr03	irgsp1_rep	CDS	24850993	24851208	.	-	0	Parent=Os03t0644400-02
Chr03	irgsp1_rep	CDS	24850473	24850853	.	-	0	Parent=Os03t0644400-02
Chr03	irgsp1_rep	three_prime_UTR	24850198	24850472	.	-	.	Parent=Os03t0644400-02
Chr03	irgsp1_rep	mRNA	24865500	24866379	.	-	.	ID=Os03t0644600-00;Name=Os03t0644600-00;Locus_id=Os03g0644600;Note=Protein of unknown function DUF761%2C plant domain containing protein.;Transcript_evidence=AK376083 (DDBJ);ORF_evidence=Q60DN1 (UniProt);InterPro=Protein of unknown function DUF761%2C plant (IPR008480);TENOR=Os03t0644600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	24866349	24866379	.	-	.	Parent=Os03t0644600-00
Chr03	irgsp1_rep	CDS	24865500	24866348	.	-	0	Parent=Os03t0644600-00
Chr03	irgsp1_rep	mRNA	24881757	24883321	.	+	.	ID=Os03t0644700-01;Name=Os03t0644700-01;Locus_id=Os03g0644700;Note=Conserved hypothetical protein.;Transcript_evidence=AK072883 (DDBJ%2C Best hit);ORF_evidence=F2E977 (UniProt);NIAS_FLcDNA=J023149L05;TENOR=Os03t0644700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	24881757	24882549	.	+	.	Parent=Os03t0644700-01
Chr03	irgsp1_rep	CDS	24882550	24882843	.	+	0	Parent=Os03t0644700-01
Chr03	irgsp1_rep	three_prime_UTR	24882844	24883321	.	+	.	Parent=Os03t0644700-01
Chr03	irgsp1_rep	mRNA	24882399	24884230	.	-	.	ID=Os03t0644850-00;Name=Os03t0644850-00;Locus_id=Os03g0644850;Note=Conserved hypothetical protein.;Transcript_evidence=BT085651 (DDBJ);ORF_evidence=NP_001169271.1 (RefSeq);TENOR=Os03t0644850-00
Chr03	irgsp1_rep	five_prime_UTR	24883710	24884230	.	-	.	Parent=Os03t0644850-00
Chr03	irgsp1_rep	CDS	24883443	24883709	.	-	0	Parent=Os03t0644850-00
Chr03	irgsp1_rep	CDS	24882399	24882836	.	-	0	Parent=Os03t0644850-00
Chr03	irgsp1_rep	mRNA	24894987	24898072	.	+	.	ID=Os03t0645000-00;Name=Os03t0645000-00;Locus_id=Os03g0645000;CGSNL Gene Symbol=EXPB12;CGSNL Gene Name=BETA-EXPANSIN 12;Oryzabase Gene Symbol Synonym(s)=OsEXPB12%2C OsaEXPb1.17;Oryzabase Gene Name Synonym(s)=Expansin-B12%2C Beta-expansin-12;Note=Similar to Expansin-B12.;Transcript_evidence=CT835183 (DDBJ%2C Best hit);ORF_evidence=A2XK27 (UniProt);GO=Biological Process: sexual reproduction (GO:0019953),Cellular Component: extracellular region (GO:0005576);InterPro=Major pollen allergen Lol pI (IPR005795),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);Oryzabase=7343;TENOR=Os03t0645000-00;KEGG=Os03t0645000-00
Chr03	irgsp1_rep	five_prime_UTR	24894987	24895051	.	+	.	Parent=Os03t0645000-00
Chr03	irgsp1_rep	five_prime_UTR	24895163	24895239	.	+	.	Parent=Os03t0645000-00
Chr03	irgsp1_rep	five_prime_UTR	24895321	24895324	.	+	.	Parent=Os03t0645000-00
Chr03	irgsp1_rep	CDS	24895325	24895379	.	+	0	Parent=Os03t0645000-00
Chr03	irgsp1_rep	CDS	24896658	24896771	.	+	2	Parent=Os03t0645000-00
Chr03	irgsp1_rep	CDS	24896875	24896987	.	+	2	Parent=Os03t0645000-00
Chr03	irgsp1_rep	CDS	24897075	24897295	.	+	0	Parent=Os03t0645000-00
Chr03	irgsp1_rep	CDS	24897485	24897923	.	+	1	Parent=Os03t0645000-00
Chr03	irgsp1_rep	three_prime_UTR	24897924	24898072	.	+	.	Parent=Os03t0645000-00
Chr03	irgsp1_rep	mRNA	24902822	24905484	.	+	.	ID=Os03t0645100-01;Name=Os03t0645100-01;Locus_id=Os03g0645100;Note=Similar to pyruvate dehydrogenase E1 component subunit beta.;Transcript_evidence=AK103256 (DDBJ%2C Best hit);ORF_evidence=NP_001150473.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Transketolase-like%2C pyrimidine-binding domain (IPR005475),Transketolase%2C C-terminal (IPR005476),Transketolase%2C C-terminal/Pyruvate-ferredoxin oxidoreductase%2C domain II (IPR009014),Transketolase-like%2C C-terminal (IPR015941);NIAS_FLcDNA=J033124A09;TENOR=Os03t0645100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	24902822	24904265	.	+	.	Parent=Os03t0645100-01
Chr03	irgsp1_rep	CDS	24904266	24905249	.	+	0	Parent=Os03t0645100-01
Chr03	irgsp1_rep	three_prime_UTR	24905250	24905484	.	+	.	Parent=Os03t0645100-01
Chr03	irgsp1_rep	mRNA	24904283	24905460	.	+	.	ID=Os03t0645100-02;Name=Os03t0645100-02;Locus_id=Os03g0645100;Note=Similar to pyruvate dehydrogenase E1 component subunit beta.;Transcript_evidence=AK069197 (DDBJ%2C Best hit);ORF_evidence=NP_001150473.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Transketolase-like%2C pyrimidine-binding domain (IPR005475),Transketolase%2C C-terminal (IPR005476),Transketolase%2C C-terminal/Pyruvate-ferredoxin oxidoreductase%2C domain II (IPR009014),Transketolase-like%2C C-terminal (IPR015941);NIAS_FLcDNA=J023008A03;TENOR=Os03t0645100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	24904283	24904283	.	+	.	Parent=Os03t0645100-02
Chr03	irgsp1_rep	CDS	24904284	24905249	.	+	0	Parent=Os03t0645100-02
Chr03	irgsp1_rep	three_prime_UTR	24905250	24905460	.	+	.	Parent=Os03t0645100-02
Chr03	irgsp1_rep	mRNA	24905089	24905484	.	+	.	ID=Os03t0645100-03;Name=Os03t0645100-03;Locus_id=Os03g0645100;Note=Similar to pyruvate dehydrogenase E1 component subunit beta.;Transcript_evidence=AK104972 (DDBJ%2C Best hit);ORF_evidence=NP_001150473.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Transketolase-like%2C C-terminal (IPR015941);NIAS_FLcDNA=001-122-A07;Expression=AK104972;TENOR=Os03t0645100-03;KEGG=Os03t0645100-03 (EC:1.2.4.1)
Chr03	irgsp1_rep	five_prime_UTR	24905089	24905090	.	+	.	Parent=Os03t0645100-03
Chr03	irgsp1_rep	CDS	24905091	24905249	.	+	0	Parent=Os03t0645100-03
Chr03	irgsp1_rep	three_prime_UTR	24905250	24905484	.	+	.	Parent=Os03t0645100-03
Chr03	irgsp1_rep	mRNA	24905586	24907886	.	-	.	ID=Os03t0645200-01;Name=Os03t0645200-01;Locus_id=Os03g0645200;Note=Similar to Translation initiation factor eIF-2B delta subunit (eIF-2B GDP-GTP exchange factor).;Transcript_evidence=AK060478 (DDBJ%2C Best hit);ORF_evidence=NP_001159071.1 (RefSeq);GO=Biological Process: cellular metabolic process (GO:0044237);InterPro=Initiation factor 2B-related (IPR000649);NIAS_FLcDNA=001-012-F12;Expression=AK060478;TENOR=Os03t0645200-01;KEGG=Os03t0645200-01
Chr03	irgsp1_rep	five_prime_UTR	24907885	24907886	.	-	.	Parent=Os03t0645200-01
Chr03	irgsp1_rep	CDS	24907647	24907884	.	-	0	Parent=Os03t0645200-01
Chr03	irgsp1_rep	CDS	24907466	24907562	.	-	2	Parent=Os03t0645200-01
Chr03	irgsp1_rep	CDS	24907295	24907349	.	-	1	Parent=Os03t0645200-01
Chr03	irgsp1_rep	CDS	24906123	24906185	.	-	0	Parent=Os03t0645200-01
Chr03	irgsp1_rep	three_prime_UTR	24905586	24906122	.	-	.	Parent=Os03t0645200-01
Chr03	irgsp1_rep	mRNA	24905964	24910950	.	+	.	ID=Os03t0645250-00;Name=Os03t0645250-00;Locus_id=Os03g0645250;Note=Hypothetical protein.;Transcript_evidence=tplb0051c11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0645250-00
Chr03	irgsp1_rep	five_prime_UTR	24905964	24906174	.	+	.	Parent=Os03t0645250-00
Chr03	irgsp1_rep	five_prime_UTR	24907286	24907337	.	+	.	Parent=Os03t0645250-00
Chr03	irgsp1_rep	five_prime_UTR	24907459	24907566	.	+	.	Parent=Os03t0645250-00
Chr03	irgsp1_rep	five_prime_UTR	24907651	24908401	.	+	.	Parent=Os03t0645250-00
Chr03	irgsp1_rep	five_prime_UTR	24908922	24909276	.	+	.	Parent=Os03t0645250-00
Chr03	irgsp1_rep	five_prime_UTR	24909366	24909543	.	+	.	Parent=Os03t0645250-00
Chr03	irgsp1_rep	five_prime_UTR	24910562	24910687	.	+	.	Parent=Os03t0645250-00
Chr03	irgsp1_rep	CDS	24910688	24910950	.	+	0	Parent=Os03t0645250-00
Chr03	irgsp1_rep	mRNA	24959201	24961260	.	+	.	ID=Os03t0645900-00;Name=Os03t0645900-00;Locus_id=Os03g0645900;CGSNL Gene Symbol=NCED1;CGSNL Gene Name=9-CIS-EPOXYCAROTENOID DIOXYGENASE 1;Oryzabase Gene Symbol Synonym(s)=OSNCED1%2C OsNCED-1%2C OsNCED3%2C OsNced3%2C NCED3;Oryzabase Gene Name Synonym(s)=9-cis-epoxycarotenoid dioxygenase 1%2C 9-Cis-Epoxycarotenoid Dioxygenase 3;Note=Carotenoid oxygenase family protein.;Transcript_evidence=AY838899 (DDBJ%2C Best hit);ORF_evidence=NP_001105902.2 (RefSeq);InterPro=Carotenoid oxygenase (IPR004294);Oryzabase=9701;TENOR=Os03t0645900-00;KEGG=Os03t0645900-00 (EC:1.13.11.51)
Chr03	irgsp1_rep	five_prime_UTR	24959201	24959370	.	+	.	Parent=Os03t0645900-00
Chr03	irgsp1_rep	CDS	24959371	24961197	.	+	0	Parent=Os03t0645900-00
Chr03	irgsp1_rep	three_prime_UTR	24961198	24961260	.	+	.	Parent=Os03t0645900-00
Chr03	irgsp1_rep	mRNA	24959718	24961198	.	-	.	ID=Os03t0645966-00;Name=Os03t0645966-00;Locus_id=Os03g0645966;Note=Hypothetical gene.;Transcript_evidence=BT085311 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0645966-00;KEGG=Os03t0645966-00
Chr03	irgsp1_rep	five_prime_UTR	24961198	24961198	.	-	.	Parent=Os03t0645966-00
Chr03	irgsp1_rep	CDS	24960862	24961197	.	-	0	Parent=Os03t0645966-00
Chr03	irgsp1_rep	CDS	24960109	24960720	.	-	0	Parent=Os03t0645966-00
Chr03	irgsp1_rep	three_prime_UTR	24959718	24960108	.	-	.	Parent=Os03t0645966-00
Chr03	irgsp1_rep	mRNA	24996395	24998425	.	-	.	ID=Os03t0646032-01;Name=Os03t0646032-01;Locus_id=Os03g0646032;Note=Hypothetical gene.;Transcript_evidence=AK288494 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090040M01;TENOR=Os03t0646032-01
Chr03	irgsp1_rep	five_prime_UTR	24996724	24998425	.	-	.	Parent=Os03t0646032-01
Chr03	irgsp1_rep	CDS	24996395	24996723	.	-	0	Parent=Os03t0646032-01
Chr03	irgsp1_rep	mRNA	24996647	25000959	.	+	.	ID=Os03t0646100-01;Name=Os03t0646100-01;Locus_id=Os03g0646100;Oryzabase Gene Symbol Synonym(s)=FtsZ2-1;Oryzabase Gene Name Synonym(s)=plastid division protein FtsZ2-1;Note=Similar to Plastid division protein ftsZ1 precursor.;Transcript_evidence=AK100526 (DDBJ%2C Best hit);ORF_evidence=Q9LRC5 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: protein polymerization (GO:0051258),Cellular Component: cytoplasm (GO:0005737),Cellular Component: protein complex (GO:0043234),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Cell division protein FtsZ (IPR000158),Tubulin/FtsZ%2C GTPase domain (IPR003008),Tubulin/FtsZ%2C C-terminal (IPR008280),Tubulin/FtsZ%2C 2-layer sandwich domain (IPR018316),Cell division protein FtsZ%2C conserved site (IPR020805),Cell division protein FtsZ%2C C-terminal (IPR024757);NIAS_FLcDNA=J023101A08;Oryzabase=9291;Expression=AK100526;TENOR=Os03t0646100-01;KEGG=Os03t0646100-01
Chr03	irgsp1_rep	five_prime_UTR	24996647	24996969	.	+	.	Parent=Os03t0646100-01
Chr03	irgsp1_rep	five_prime_UTR	24997074	24997157	.	+	.	Parent=Os03t0646100-01
Chr03	irgsp1_rep	CDS	24997158	24997724	.	+	0	Parent=Os03t0646100-01
Chr03	irgsp1_rep	CDS	24997815	24998114	.	+	0	Parent=Os03t0646100-01
Chr03	irgsp1_rep	CDS	24998247	24998337	.	+	0	Parent=Os03t0646100-01
Chr03	irgsp1_rep	CDS	24998838	24998962	.	+	2	Parent=Os03t0646100-01
Chr03	irgsp1_rep	CDS	24999969	25000061	.	+	0	Parent=Os03t0646100-01
Chr03	irgsp1_rep	CDS	25000340	25000405	.	+	0	Parent=Os03t0646100-01
Chr03	irgsp1_rep	CDS	25000482	25000598	.	+	0	Parent=Os03t0646100-01
Chr03	irgsp1_rep	three_prime_UTR	25000599	25000959	.	+	.	Parent=Os03t0646100-01
Chr03	irgsp1_rep	mRNA	25001670	25003485	.	-	.	ID=Os03t0646200-01;Name=Os03t0646200-01;Locus_id=Os03g0646200;Note=Peptidase C12%2C ubiquitin carboxyl-terminal hydrolase 1 domain containing protein.;Transcript_evidence=AK063276 (DDBJ%2C Best hit);ORF_evidence=C4J997 (UniProt);InterPro=ELM2 domain (IPR000949),Plant organelle RNA recognition domain (IPR021099);NIAS_FLcDNA=001-113-C05;Expression=AK063276;TENOR=Os03t0646200-01;KEGG=Os03t0646200-01
Chr03	irgsp1_rep	five_prime_UTR	25003413	25003485	.	-	.	Parent=Os03t0646200-01
Chr03	irgsp1_rep	CDS	25002072	25003412	.	-	0	Parent=Os03t0646200-01
Chr03	irgsp1_rep	three_prime_UTR	25001670	25002071	.	-	.	Parent=Os03t0646200-01
Chr03	irgsp1_rep	mRNA	25003664	25007784	.	+	.	ID=Os03t0646300-01;Name=Os03t0646300-01;Locus_id=Os03g0646300;CGSNL Gene Symbol=CNGC6;CGSNL Gene Name=CYCLIC NUCLEOTIDE GATED CHANNEL 6;Oryzabase Gene Symbol Synonym(s)=OsCNGC6%2C OsCNGC4%2C OsSTA107;Oryzabase Gene Name Synonym(s)=Cyclic nucleotide gated channel 6%2C Cyclic nucleotide-gated ion channel 4;Note=Similar to Cyclic nucleotide-gated channel A (Fragment).;Transcript_evidence=AK069229 (DDBJ%2C Best hit);ORF_evidence=NP_565560.1 (RefSeq);GO=Biological Process: ion transport (GO:0006811),Biological Process: potassium ion transport (GO:0006813),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: ion channel activity (GO:0005216),Molecular Function: voltage-gated potassium channel activity (GO:0005249),Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048),Cyclic nucleotide-binding domain (IPR000595),Potassium channel%2C voltage-dependent%2C EAG/ELK/ERG (IPR003938),Ion transport (IPR005821),RmlC-like jelly roll fold (IPR014710),Cyclic nucleotide-binding-like (IPR018490);NIAS_FLcDNA=J023012H21;Oryzabase=15479;Expression=AK069229;TENOR=Os03t0646300-01;KEGG=Os03t0646300-01
Chr03	irgsp1_rep	five_prime_UTR	25003664	25003773	.	+	.	Parent=Os03t0646300-01
Chr03	irgsp1_rep	five_prime_UTR	25003870	25003904	.	+	.	Parent=Os03t0646300-01
Chr03	irgsp1_rep	CDS	25003905	25004708	.	+	0	Parent=Os03t0646300-01
Chr03	irgsp1_rep	CDS	25005351	25005655	.	+	0	Parent=Os03t0646300-01
Chr03	irgsp1_rep	CDS	25006451	25007270	.	+	1	Parent=Os03t0646300-01
Chr03	irgsp1_rep	CDS	25007316	25007477	.	+	0	Parent=Os03t0646300-01
Chr03	irgsp1_rep	three_prime_UTR	25007478	25007784	.	+	.	Parent=Os03t0646300-01
Chr03	irgsp1_rep	mRNA	25003873	25007505	.	-	.	ID=Os03t0646350-00;Name=Os03t0646350-00;Locus_id=Os03g0646350;Note=Hypothetical protein.;Transcript_evidence=tplb0026j22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0646350-00
Chr03	irgsp1_rep	five_prime_UTR	25006559	25007505	.	-	.	Parent=Os03t0646350-00
Chr03	irgsp1_rep	CDS	25006454	25006558	.	-	0	Parent=Os03t0646350-00
Chr03	irgsp1_rep	CDS	25005351	25005650	.	-	0	Parent=Os03t0646350-00
Chr03	irgsp1_rep	CDS	25003989	25004708	.	-	0	Parent=Os03t0646350-00
Chr03	irgsp1_rep	three_prime_UTR	25003873	25003988	.	-	.	Parent=Os03t0646350-00
Chr03	irgsp1_rep	mRNA	25009415	25010369	.	-	.	ID=Os03t0646400-01;Name=Os03t0646400-01;Locus_id=Os03g0646400;Note=Transmembrane protein 97%2C predicted domain containing protein.;Transcript_evidence=AK108306 (DDBJ%2C Best hit);ORF_evidence=B8ANI1 (UniProt);InterPro=Transmembrane protein 6/97 (IPR016964);NIAS_FLcDNA=002-141-F06;Expression=AK108306;TENOR=Os03t0646400-01;KEGG=Os03t0646400-01
Chr03	irgsp1_rep	five_prime_UTR	25010356	25010369	.	-	.	Parent=Os03t0646400-01
Chr03	irgsp1_rep	CDS	25010032	25010355	.	-	0	Parent=Os03t0646400-01
Chr03	irgsp1_rep	CDS	25009570	25009746	.	-	0	Parent=Os03t0646400-01
Chr03	irgsp1_rep	three_prime_UTR	25009415	25009569	.	-	.	Parent=Os03t0646400-01
Chr03	irgsp1_rep	mRNA	25033523	25041950	.	+	.	ID=Os03t0646800-01;Name=Os03t0646800-01;Locus_id=Os03g0646800;Note=Similar to DNA-directed RNA polymerase.;Transcript_evidence=AK111443 (DDBJ%2C Best hit);ORF_evidence=Q10G20 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899),Molecular Function: ribonucleoside binding (GO:0032549);InterPro=RNA polymerase%2C beta subunit%2C protrusion (IPR007644),DNA-directed RNA polymerase%2C subunit 2 (IPR015712);NIAS_FLcDNA=002-183-A09;TENOR=Os03t0646800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	25033523	25033707	.	+	.	Parent=Os03t0646800-01
Chr03	irgsp1_rep	CDS	25033708	25034055	.	+	0	Parent=Os03t0646800-01
Chr03	irgsp1_rep	CDS	25035614	25035782	.	+	0	Parent=Os03t0646800-01
Chr03	irgsp1_rep	CDS	25039899	25039938	.	+	2	Parent=Os03t0646800-01
Chr03	irgsp1_rep	CDS	25040018	25040048	.	+	1	Parent=Os03t0646800-01
Chr03	irgsp1_rep	three_prime_UTR	25040049	25040071	.	+	.	Parent=Os03t0646800-01
Chr03	irgsp1_rep	three_prime_UTR	25040150	25040293	.	+	.	Parent=Os03t0646800-01
Chr03	irgsp1_rep	three_prime_UTR	25040385	25040684	.	+	.	Parent=Os03t0646800-01
Chr03	irgsp1_rep	three_prime_UTR	25040868	25041290	.	+	.	Parent=Os03t0646800-01
Chr03	irgsp1_rep	three_prime_UTR	25041404	25041950	.	+	.	Parent=Os03t0646800-01
Chr03	irgsp1_rep	mRNA	25033612	25034844	.	+	.	ID=Os03t0646800-02;Name=Os03t0646800-02;Locus_id=Os03g0646800;Note=RNA polymerase%2C beta subunit%2C protrusion domain containing protein.;Transcript_evidence=AK099997 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899),Molecular Function: ribonucleoside binding (GO:0032549);InterPro=RNA polymerase%2C beta subunit%2C protrusion (IPR007644),DNA-directed RNA polymerase%2C subunit 2 (IPR015712);NIAS_FLcDNA=J013133G05;TENOR=Os03t0646800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	25033612	25034100	.	+	0	Parent=Os03t0646800-02
Chr03	irgsp1_rep	three_prime_UTR	25034101	25034844	.	+	.	Parent=Os03t0646800-02
Chr03	irgsp1_rep	mRNA	25040422	25041271	.	-	.	ID=Os03t0646850-00;Name=Os03t0646850-00;Locus_id=Os03g0646850;Note=Non-protein coding transcript.;Transcript_evidence=BT017109 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0646850-00
Chr03	irgsp1_rep	exon	25040890	25041271	.	-	.	Parent=Os03t0646850-00
Chr03	irgsp1_rep	exon	25040422	25040724	.	-	.	Parent=Os03t0646850-00
Chr03	irgsp1_rep	mRNA	25042427	25051072	.	-	.	ID=Os03t0646900-01;Name=Os03t0646900-01;Locus_id=Os03g0646900;RAP-DB Gene Symbol Synonym(s)=OsPPKL1%2C GL3.1;RAP-DB Gene Name Synonym(s)=protein phosphatase with Kelch-like repeat domain 1%2C grain length 3.1;CGSNL Gene Symbol=GL3.1;CGSNL Gene Name=GRAIN LENGTH 3.1;Oryzabase Gene Symbol Synonym(s)=OsPPKL1%2C PPKL1%2C qGL3%2C OsPP54%2C PP54%2C OsGL3.1%2C qGL3/OsPPKL1;Oryzabase Gene Name Synonym(s)=protein phosphatase with Kelch-like repeat domain 1%2C grain length 3%2C Grain Length 3.1%2C Protein phosphatase 54;Note=Protein phosphatase with Kelch-like repeat domain%2C Serine/threonine phosphatase (EC:3.1.3.16)%2C Regulation of grain length and yield;Transcript_evidence=AK288069 (truncated),Inferred from literature;ORF_evidence=Q10G19;GO=Biological Process: brassinosteroid mediated signaling pathway (GO:0009742),Molecular Function: phosphoprotein phosphatase activity (GO:0004721),Molecular Function: protein binding (GO:0005515),Molecular Function: hydrolase activity (GO:0016787);InterPro=Kelch-type beta propeller (IPR015915),Metallo-dependent phosphatase-like (IPR029052),Serine/threonine protein phosphatase%2C BSU1 (IPR012391),Calcineurin-like phosphoesterase domain%2C ApaH type (IPR004843),Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (IPR006186),Kelch repeat type 2 (IPR011498);NIAS_FLcDNA=J075158N05 (truncated);Manual Curation=September 29%2C 2017;Literature_PMID=23236132,23147796,23137285;Oryzabase=11677;TENOR=Os03t0646900-01;KEGG=Os03t0646900-01 (EC:3.1.3.16);B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=cellular_component (GO:0005575) [whole cell]
Chr03	irgsp1_rep	CDS	25050658	25051072	.	-	0	Parent=Os03t0646900-01
Chr03	irgsp1_rep	CDS	25049691	25049751	.	-	2	Parent=Os03t0646900-01
Chr03	irgsp1_rep	CDS	25049449	25049527	.	-	1	Parent=Os03t0646900-01
Chr03	irgsp1_rep	CDS	25049193	25049272	.	-	0	Parent=Os03t0646900-01
Chr03	irgsp1_rep	CDS	25049019	25049113	.	-	1	Parent=Os03t0646900-01
Chr03	irgsp1_rep	CDS	25048813	25048912	.	-	2	Parent=Os03t0646900-01
Chr03	irgsp1_rep	CDS	25048403	25048472	.	-	1	Parent=Os03t0646900-01
Chr03	irgsp1_rep	CDS	25047424	25047525	.	-	0	Parent=Os03t0646900-01
Chr03	irgsp1_rep	CDS	25047258	25047339	.	-	0	Parent=Os03t0646900-01
Chr03	irgsp1_rep	CDS	25046569	25046748	.	-	2	Parent=Os03t0646900-01
Chr03	irgsp1_rep	CDS	25045987	25046260	.	-	2	Parent=Os03t0646900-01
Chr03	irgsp1_rep	CDS	25045632	25045872	.	-	1	Parent=Os03t0646900-01
Chr03	irgsp1_rep	CDS	25045290	25045460	.	-	0	Parent=Os03t0646900-01
Chr03	irgsp1_rep	CDS	25044887	25045125	.	-	0	Parent=Os03t0646900-01
Chr03	irgsp1_rep	CDS	25044315	25044399	.	-	1	Parent=Os03t0646900-01
Chr03	irgsp1_rep	CDS	25044122	25044220	.	-	0	Parent=Os03t0646900-01
Chr03	irgsp1_rep	CDS	25043838	25044037	.	-	0	Parent=Os03t0646900-01
Chr03	irgsp1_rep	CDS	25043672	25043747	.	-	1	Parent=Os03t0646900-01
Chr03	irgsp1_rep	CDS	25043446	25043581	.	-	0	Parent=Os03t0646900-01
Chr03	irgsp1_rep	CDS	25043227	25043366	.	-	2	Parent=Os03t0646900-01
Chr03	irgsp1_rep	CDS	25043046	25043132	.	-	0	Parent=Os03t0646900-01
Chr03	irgsp1_rep	three_prime_UTR	25042427	25043045	.	-	.	Parent=Os03t0646900-01
Chr03	irgsp1_rep	mRNA	25061470	25062348	.	+	.	ID=Os03t0647400-01;Name=Os03t0647400-01;Locus_id=Os03g0647400;Note=GCK domain containing protein.;Transcript_evidence=AK073665 (DDBJ%2C Best hit);ORF_evidence=Q9LMF3 (UniProt);InterPro=GCK (IPR012891);NIAS_FLcDNA=J033051B07;Expression=AK073665;TENOR=Os03t0647400-01;KEGG=Os03t0647400-01
Chr03	irgsp1_rep	five_prime_UTR	25061470	25061504	.	+	.	Parent=Os03t0647400-01
Chr03	irgsp1_rep	CDS	25061505	25062095	.	+	0	Parent=Os03t0647400-01
Chr03	irgsp1_rep	three_prime_UTR	25062096	25062348	.	+	.	Parent=Os03t0647400-01
Chr03	irgsp1_rep	mRNA	25063106	25066789	.	-	.	ID=Os03t0647500-01;Name=Os03t0647500-01;Locus_id=Os03g0647500;Note=Similar to GTP binding protein.;Transcript_evidence=AK064308 (DDBJ%2C Best hit);ORF_evidence=B6U832 (UniProt);NIAS_FLcDNA=002-107-B10;Expression=AK064308;TENOR=Os03t0647500-01;KEGG=Os03t0647500-01
Chr03	irgsp1_rep	five_prime_UTR	25066762	25066789	.	-	.	Parent=Os03t0647500-01
Chr03	irgsp1_rep	CDS	25066475	25066761	.	-	0	Parent=Os03t0647500-01
Chr03	irgsp1_rep	CDS	25066275	25066364	.	-	1	Parent=Os03t0647500-01
Chr03	irgsp1_rep	CDS	25066100	25066186	.	-	1	Parent=Os03t0647500-01
Chr03	irgsp1_rep	CDS	25065654	25065747	.	-	1	Parent=Os03t0647500-01
Chr03	irgsp1_rep	CDS	25065280	25065336	.	-	0	Parent=Os03t0647500-01
Chr03	irgsp1_rep	CDS	25064569	25064648	.	-	0	Parent=Os03t0647500-01
Chr03	irgsp1_rep	CDS	25064308	25064470	.	-	1	Parent=Os03t0647500-01
Chr03	irgsp1_rep	CDS	25063632	25063700	.	-	0	Parent=Os03t0647500-01
Chr03	irgsp1_rep	three_prime_UTR	25063106	25063631	.	-	.	Parent=Os03t0647500-01
Chr03	irgsp1_rep	mRNA	25063166	25066668	.	-	.	ID=Os03t0647500-02;Name=Os03t0647500-02;Locus_id=Os03g0647500;Note=Similar to GTP binding protein.;Transcript_evidence=AK103649 (DDBJ%2C Best hit);ORF_evidence=B6U832 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=GTP-binding domain%2C HSR1-related (IPR002917),GTP1/OBG (IPR006073);NIAS_FLcDNA=J033135D01;Expression=AK103649;TENOR=Os03t0647500-02;KEGG=Os03t0647500-02
Chr03	irgsp1_rep	CDS	25066475	25066668	.	-	0	Parent=Os03t0647500-02
Chr03	irgsp1_rep	CDS	25066275	25066364	.	-	1	Parent=Os03t0647500-02
Chr03	irgsp1_rep	CDS	25066100	25066186	.	-	1	Parent=Os03t0647500-02
Chr03	irgsp1_rep	CDS	25065654	25065747	.	-	1	Parent=Os03t0647500-02
Chr03	irgsp1_rep	CDS	25065280	25065336	.	-	0	Parent=Os03t0647500-02
Chr03	irgsp1_rep	CDS	25064569	25064648	.	-	0	Parent=Os03t0647500-02
Chr03	irgsp1_rep	CDS	25063348	25064470	.	-	1	Parent=Os03t0647500-02
Chr03	irgsp1_rep	three_prime_UTR	25063166	25063347	.	-	.	Parent=Os03t0647500-02
Chr03	irgsp1_rep	mRNA	25063964	25064641	.	+	.	ID=Os03t0647550-00;Name=Os03t0647550-00;Locus_id=Os03g0647550;Note=Non-protein coding transcript.;Transcript_evidence=AF124739 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0647550-00
Chr03	irgsp1_rep	exon	25063964	25064468	.	+	.	Parent=Os03t0647550-00
Chr03	irgsp1_rep	exon	25064567	25064641	.	+	.	Parent=Os03t0647550-00
Chr03	irgsp1_rep	mRNA	25066093	25066665	.	+	.	ID=Os03t0647575-00;Name=Os03t0647575-00;Locus_id=Os03g0647575;Note=Hypothetical protein.;Transcript_evidence=BT086909 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0647575-00
Chr03	irgsp1_rep	five_prime_UTR	25066093	25066178	.	+	.	Parent=Os03t0647575-00
Chr03	irgsp1_rep	CDS	25066179	25066184	.	+	0	Parent=Os03t0647575-00
Chr03	irgsp1_rep	CDS	25066268	25066355	.	+	0	Parent=Os03t0647575-00
Chr03	irgsp1_rep	CDS	25066493	25066665	.	+	2	Parent=Os03t0647575-00
Chr03	irgsp1_rep	mRNA	25069214	25074703	.	-	.	ID=Os03t0647600-01;Name=Os03t0647600-01;Locus_id=Os03g0647600;CGSNL Gene Symbol=HAP2H;CGSNL Gene Name=HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX;Oryzabase Gene Symbol Synonym(s)=OsHAP2H%2C NF-YA%2C CBF-B%2C NF-YA3%2C OsNF-YA3%2C NFYA3;Oryzabase Gene Name Synonym(s)=NUCLEAR FACTOR-Y subunit A3%2C NUCLEAR FACTOR-Y subunit NF-YA3%2C NF-YA transcription factor 3%2C NF-YA subunit 3%2C NF-YA family 3;Note=Similar to Nf-Y-A subunit.;Transcript_evidence=AK106398 (DDBJ%2C Best hit);ORF_evidence=NP_001149937.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=CCAAT-binding transcription factor%2C subunit B (IPR001289);NIAS_FLcDNA=002-102-F12;Oryzabase=8480;Expression=AK106398;TENOR=Os03t0647600-01;KEGG=Os03t0647600-01
Chr03	irgsp1_rep	five_prime_UTR	25074279	25074703	.	-	.	Parent=Os03t0647600-01
Chr03	irgsp1_rep	five_prime_UTR	25073668	25073821	.	-	.	Parent=Os03t0647600-01
Chr03	irgsp1_rep	CDS	25073379	25073667	.	-	0	Parent=Os03t0647600-01
Chr03	irgsp1_rep	CDS	25071539	25071657	.	-	2	Parent=Os03t0647600-01
Chr03	irgsp1_rep	CDS	25071301	25071369	.	-	0	Parent=Os03t0647600-01
Chr03	irgsp1_rep	CDS	25070759	25070902	.	-	0	Parent=Os03t0647600-01
Chr03	irgsp1_rep	CDS	25069604	25070047	.	-	0	Parent=Os03t0647600-01
Chr03	irgsp1_rep	three_prime_UTR	25069214	25069603	.	-	.	Parent=Os03t0647600-01
Chr03	irgsp1_rep	mRNA	25093039	25096872	.	-	.	ID=Os03t0647800-01;Name=Os03t0647800-01;Locus_id=Os03g0647800;Note=Similar to expp1 protein.;Transcript_evidence=AK061238 (DDBJ%2C Best hit),AK070243 (DDBJ%2C Best hit);ORF_evidence=NP_001148709.1 (RefSeq);NIAS_FLcDNA=006-211-C04,J023047G07;TENOR=Os03t0647800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	25096804	25096872	.	-	.	Parent=Os03t0647800-01
Chr03	irgsp1_rep	CDS	25096483	25096803	.	-	0	Parent=Os03t0647800-01
Chr03	irgsp1_rep	CDS	25093761	25093868	.	-	0	Parent=Os03t0647800-01
Chr03	irgsp1_rep	CDS	25093355	25093663	.	-	0	Parent=Os03t0647800-01
Chr03	irgsp1_rep	three_prime_UTR	25093039	25093354	.	-	.	Parent=Os03t0647800-01
Chr03	irgsp1_rep	mRNA	25096446	25096807	.	+	.	ID=Os03t0647950-00;Name=Os03t0647950-00;Locus_id=Os03g0647950;Note=Non-protein coding transcript.;Transcript_evidence=EU948379 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0647950-00
Chr03	irgsp1_rep	exon	25096446	25096807	.	+	.	Parent=Os03t0647950-00
Chr03	irgsp1_rep	mRNA	25102500	25104053	.	-	.	ID=Os03t0648100-01;Name=Os03t0648100-01;Locus_id=Os03g0648100;Note=Protein of unknown function DUF266%2C plant family protein.;Transcript_evidence=AK109329 (DDBJ%2C Best hit);ORF_evidence=A3AKV3 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: acetylglucosaminyltransferase activity (GO:0008375);InterPro=Glycosyl transferase%2C family 14 (IPR003406);NIAS_FLcDNA=006-201-B01;Expression=AK109329;TENOR=Os03t0648100-01;KEGG=Os03t0648100-01
Chr03	irgsp1_rep	five_prime_UTR	25103835	25104053	.	-	.	Parent=Os03t0648100-01
Chr03	irgsp1_rep	CDS	25102746	25103834	.	-	0	Parent=Os03t0648100-01
Chr03	irgsp1_rep	three_prime_UTR	25102500	25102745	.	-	.	Parent=Os03t0648100-01
Chr03	irgsp1_rep	mRNA	25110944	25111773	.	-	.	ID=Os03t0648250-00;Name=Os03t0648250-00;Locus_id=Os03g0648250;Note=Zinc finger%2C GRF-type domain containing protein.;Transcript_evidence=AK241508 (DDBJ%2C Secondary hit);ORF_evidence=Q259A1 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C GRF-type (IPR010666);TENOR=Os03t0648250-00;KEGG=Os03t0648250-00
Chr03	irgsp1_rep	five_prime_UTR	25111659	25111773	.	-	.	Parent=Os03t0648250-00
Chr03	irgsp1_rep	CDS	25111431	25111658	.	-	0	Parent=Os03t0648250-00
Chr03	irgsp1_rep	CDS	25111009	25111338	.	-	0	Parent=Os03t0648250-00
Chr03	irgsp1_rep	three_prime_UTR	25110944	25111008	.	-	.	Parent=Os03t0648250-00
Chr03	irgsp1_rep	mRNA	25116242	25124259	.	-	.	ID=Os03t0648300-01;Name=Os03t0648300-01;Locus_id=Os03g0648300;Note=Similar to Calmodulin binding protein.;Transcript_evidence=AK067192 (DDBJ%2C Best hit);ORF_evidence=B6T589 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);NIAS_FLcDNA=J013098A04;TENOR=Os03t0648300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	25124103	25124259	.	-	.	Parent=Os03t0648300-01
Chr03	irgsp1_rep	five_prime_UTR	25122888	25122918	.	-	.	Parent=Os03t0648300-01
Chr03	irgsp1_rep	CDS	25122777	25122887	.	-	0	Parent=Os03t0648300-01
Chr03	irgsp1_rep	CDS	25121492	25121737	.	-	0	Parent=Os03t0648300-01
Chr03	irgsp1_rep	CDS	25120815	25121042	.	-	0	Parent=Os03t0648300-01
Chr03	irgsp1_rep	CDS	25118590	25118703	.	-	0	Parent=Os03t0648300-01
Chr03	irgsp1_rep	CDS	25117116	25117608	.	-	0	Parent=Os03t0648300-01
Chr03	irgsp1_rep	CDS	25116504	25116634	.	-	2	Parent=Os03t0648300-01
Chr03	irgsp1_rep	three_prime_UTR	25116242	25116503	.	-	.	Parent=Os03t0648300-01
Chr03	irgsp1_rep	mRNA	25127262	25129891	.	+	.	ID=Os03t0648400-01;Name=Os03t0648400-01;Locus_id=Os03g0648400;Oryzabase Gene Symbol Synonym(s)=OsDjA4%2C YDJ1;Oryzabase Gene Name Synonym(s)=DnaJ domain protein A4%2C YDJ1 protein;Note=Similar to DnaJ protein.;Transcript_evidence=AK103763 (DDBJ%2C Best hit);ORF_evidence=NP_001130317.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C cysteine-rich domain (IPR001305),Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),HSP40/DnaJ peptide-binding (IPR008971),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=J033143G16;Oryzabase=12141;Expression=AK103763;TENOR=Os03t0648400-01;KEGG=Os03t0648400-01
Chr03	irgsp1_rep	five_prime_UTR	25127262	25127422	.	+	.	Parent=Os03t0648400-01
Chr03	irgsp1_rep	CDS	25127423	25127572	.	+	0	Parent=Os03t0648400-01
Chr03	irgsp1_rep	CDS	25129124	25129286	.	+	0	Parent=Os03t0648400-01
Chr03	irgsp1_rep	CDS	25129393	25129534	.	+	2	Parent=Os03t0648400-01
Chr03	irgsp1_rep	CDS	25129615	25129891	.	+	1	Parent=Os03t0648400-01
Chr03	irgsp1_rep	mRNA	25127263	25130981	.	+	.	ID=Os03t0648400-02;Name=Os03t0648400-02;Locus_id=Os03g0648400;Oryzabase Gene Symbol Synonym(s)=OsDjA4%2C YDJ1;Oryzabase Gene Name Synonym(s)=DnaJ domain protein A4%2C YDJ1 protein;Note=Similar to DnaJ protein homolog (DNAJ-1).;Transcript_evidence=AK102263 (DDBJ%2C Best hit);ORF_evidence=NP_001130317.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Biological Process: response to heat (GO:0009408),Molecular Function: ATP binding (GO:0005524),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C cysteine-rich domain (IPR001305),Heat shock protein DnaJ%2C N-terminal (IPR001623),Chaperone DnaJ%2C C-terminal (IPR002939),Heat shock protein DnaJ (IPR003095),HSP40/DnaJ peptide-binding (IPR008971),Chaperone DnaJ (IPR012724),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=J033088M01;Oryzabase=12141;Expression=AK102263;TENOR=Os03t0648400-02;KEGG=Os03t0648400-02
Chr03	irgsp1_rep	five_prime_UTR	25127263	25127422	.	+	.	Parent=Os03t0648400-02
Chr03	irgsp1_rep	CDS	25127423	25127572	.	+	0	Parent=Os03t0648400-02
Chr03	irgsp1_rep	CDS	25129124	25129286	.	+	0	Parent=Os03t0648400-02
Chr03	irgsp1_rep	CDS	25129393	25129534	.	+	2	Parent=Os03t0648400-02
Chr03	irgsp1_rep	CDS	25129615	25129891	.	+	1	Parent=Os03t0648400-02
Chr03	irgsp1_rep	CDS	25129974	25130172	.	+	0	Parent=Os03t0648400-02
Chr03	irgsp1_rep	CDS	25130256	25130578	.	+	2	Parent=Os03t0648400-02
Chr03	irgsp1_rep	three_prime_UTR	25130579	25130981	.	+	.	Parent=Os03t0648400-02
Chr03	irgsp1_rep	mRNA	25127296	25130863	.	+	.	ID=Os03t0648400-03;Name=Os03t0648400-03;Locus_id=Os03g0648400;Oryzabase Gene Symbol Synonym(s)=OsDjA4%2C YDJ1;Oryzabase Gene Name Synonym(s)=DnaJ domain protein A4%2C YDJ1 protein;Note=Similar to DnaJ protein homolog (DNAJ-1).;Transcript_evidence=AK105028 (DDBJ%2C Best hit);ORF_evidence=NP_001130317.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Biological Process: response to heat (GO:0009408),Molecular Function: ATP binding (GO:0005524),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C cysteine-rich domain (IPR001305),Heat shock protein DnaJ%2C N-terminal (IPR001623),Chaperone DnaJ%2C C-terminal (IPR002939),Heat shock protein DnaJ (IPR003095),HSP40/DnaJ peptide-binding (IPR008971),Chaperone DnaJ (IPR012724),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=001-012-E01;Oryzabase=12141;Expression=AK105028;TENOR=Os03t0648400-03;KEGG=Os03t0648400-03
Chr03	irgsp1_rep	five_prime_UTR	25127296	25127422	.	+	.	Parent=Os03t0648400-03
Chr03	irgsp1_rep	CDS	25127423	25127572	.	+	0	Parent=Os03t0648400-03
Chr03	irgsp1_rep	CDS	25129124	25129286	.	+	0	Parent=Os03t0648400-03
Chr03	irgsp1_rep	CDS	25129393	25129534	.	+	2	Parent=Os03t0648400-03
Chr03	irgsp1_rep	CDS	25129615	25129891	.	+	1	Parent=Os03t0648400-03
Chr03	irgsp1_rep	CDS	25129974	25130172	.	+	0	Parent=Os03t0648400-03
Chr03	irgsp1_rep	CDS	25130256	25130578	.	+	2	Parent=Os03t0648400-03
Chr03	irgsp1_rep	three_prime_UTR	25130579	25130863	.	+	.	Parent=Os03t0648400-03
Chr03	irgsp1_rep	mRNA	25130707	25130955	.	+	.	ID=Os03t0648400-04;Name=Os03t0648400-04;Locus_id=Os03g0648400;Oryzabase Gene Symbol Synonym(s)=OsDjA4%2C YDJ1;Oryzabase Gene Name Synonym(s)=DnaJ domain protein A4%2C YDJ1 protein;Note=Non-protein coding transcript.;Transcript_evidence=AK058555 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-017-D03;Oryzabase=12141;TENOR=Os03t0648400-04
Chr03	irgsp1_rep	exon	25130707	25130955	.	+	.	Parent=Os03t0648400-04
Chr03	irgsp1_rep	mRNA	25129823	25130866	.	-	.	ID=Os03t0648450-00;Name=Os03t0648450-00;Locus_id=Os03g0648450;Note=Hypothetical gene.;Transcript_evidence=BT016912 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0648450-00;KEGG=Os03t0648450-00
Chr03	irgsp1_rep	five_prime_UTR	25130609	25130866	.	-	.	Parent=Os03t0648450-00
Chr03	irgsp1_rep	CDS	25130258	25130608	.	-	0	Parent=Os03t0648450-00
Chr03	irgsp1_rep	CDS	25130164	25130169	.	-	0	Parent=Os03t0648450-00
Chr03	irgsp1_rep	three_prime_UTR	25129988	25130163	.	-	.	Parent=Os03t0648450-00
Chr03	irgsp1_rep	three_prime_UTR	25129823	25129906	.	-	.	Parent=Os03t0648450-00
Chr03	irgsp1_rep	mRNA	25131035	25131791	.	-	.	ID=Os03t0648500-01;Name=Os03t0648500-01;Locus_id=Os03g0648500;CGSNL Gene Symbol=ENODL11;CGSNL Gene Name=EARLY NODULIN LIKE PROTEIN 11;Oryzabase Gene Symbol Synonym(s)=OsENODL11;Oryzabase Gene Name Synonym(s)=early nodulin-like protein 11;Note=Cupredoxin domain containing protein.;Transcript_evidence=AK107766 (DDBJ%2C Best hit);ORF_evidence=A2XV11 (UniProt);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);NIAS_FLcDNA=002-133-B02;Oryzabase=9736;Expression=AK107766;TENOR=Os03t0648500-01;KEGG=Os03t0648500-01
Chr03	irgsp1_rep	five_prime_UTR	25131717	25131791	.	-	.	Parent=Os03t0648500-01
Chr03	irgsp1_rep	CDS	25131500	25131716	.	-	0	Parent=Os03t0648500-01
Chr03	irgsp1_rep	CDS	25131171	25131382	.	-	2	Parent=Os03t0648500-01
Chr03	irgsp1_rep	three_prime_UTR	25131035	25131170	.	-	.	Parent=Os03t0648500-01
Chr03	irgsp1_rep	mRNA	25135397	25136081	.	+	.	ID=Os03t0648600-00;Name=Os03t0648600-00;Locus_id=Os03g0648600;Note=Similar to Zinc finger%2C C3HC4 type family protein%2C expressed.;Transcript_evidence=BT087021 (DDBJ);ORF_evidence=Q10G04 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os03t0648600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	25135397	25135517	.	+	.	Parent=Os03t0648600-00
Chr03	irgsp1_rep	CDS	25135518	25136081	.	+	0	Parent=Os03t0648600-00
Chr03	irgsp1_rep	mRNA	25139612	25140600	.	-	.	ID=Os03t0648800-00;Name=Os03t0648800-00;Locus_id=Os03g0648800;Oryzabase Gene Symbol Synonym(s)=OsGRL7;Oryzabase Gene Name Synonym(s)=GRX-like protein 7%2C glutaredoxin-like protein 7;Note=Thioredoxin fold domain containing protein.;Transcript_evidence=EU970695 (DDBJ);ORF_evidence=NP_001151422.1 (RefSeq);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin (IPR002109),Thioredoxin-like fold (IPR012336);Oryzabase=13597;TENOR=Os03t0648800-00;KEGG=Os03t0648800-00
Chr03	irgsp1_rep	five_prime_UTR	25140595	25140600	.	-	.	Parent=Os03t0648800-00
Chr03	irgsp1_rep	CDS	25139620	25140594	.	-	0	Parent=Os03t0648800-00
Chr03	irgsp1_rep	three_prime_UTR	25139612	25139619	.	-	.	Parent=Os03t0648800-00
Chr03	irgsp1_rep	mRNA	25142513	25146173	.	+	.	ID=Os03t0648900-01;Name=Os03t0648900-01;Locus_id=Os03g0648900;Note=HAD-superfamily subfamily IE hydrolase protein.;Transcript_evidence=AK100007 (DDBJ%2C Best hit);ORF_evidence=B6TBE6 (UniProt);GO=Cellular Component: cytoplasm (GO:0005737),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: 5'-nucleotidase activity (GO:0008253);InterPro=Pyrimidine 5&apos%3B-nucleotidase%2C eukaryotic (IPR006434),HAD-like domain (IPR023214);NIAS_FLcDNA=J013136J16;Expression=AK100007;TENOR=Os03t0648900-01;KEGG=Os03t0648900-01
Chr03	irgsp1_rep	five_prime_UTR	25142513	25142521	.	+	.	Parent=Os03t0648900-01
Chr03	irgsp1_rep	CDS	25142522	25142788	.	+	0	Parent=Os03t0648900-01
Chr03	irgsp1_rep	CDS	25142870	25142933	.	+	0	Parent=Os03t0648900-01
Chr03	irgsp1_rep	CDS	25143054	25143186	.	+	2	Parent=Os03t0648900-01
Chr03	irgsp1_rep	CDS	25143595	25143718	.	+	1	Parent=Os03t0648900-01
Chr03	irgsp1_rep	CDS	25144173	25144229	.	+	0	Parent=Os03t0648900-01
Chr03	irgsp1_rep	CDS	25144303	25144399	.	+	0	Parent=Os03t0648900-01
Chr03	irgsp1_rep	CDS	25144706	25144913	.	+	2	Parent=Os03t0648900-01
Chr03	irgsp1_rep	CDS	25145724	25145784	.	+	1	Parent=Os03t0648900-01
Chr03	irgsp1_rep	CDS	25145880	25145933	.	+	0	Parent=Os03t0648900-01
Chr03	irgsp1_rep	three_prime_UTR	25145934	25146173	.	+	.	Parent=Os03t0648900-01
Chr03	irgsp1_rep	mRNA	25142553	25146392	.	+	.	ID=Os03t0648900-02;Name=Os03t0648900-02;Locus_id=Os03g0648900;Note=Similar to Pyrimidine 5'-nucleotidase family protein%2C expressed.;Transcript_evidence=AK060491 (DDBJ%2C Best hit);ORF_evidence=Q60DI6 (UniProt);GO=Cellular Component: cytoplasm (GO:0005737),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: 5'-nucleotidase activity (GO:0008253);InterPro=Pyrimidine 5'-nucleotidase%2C eukaryotic (IPR006434),HAD-like domain (IPR023214);NIAS_FLcDNA=001-016-A07;TENOR=Os03t0648900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	25142553	25142674	.	+	.	Parent=Os03t0648900-02
Chr03	irgsp1_rep	CDS	25142675	25142788	.	+	0	Parent=Os03t0648900-02
Chr03	irgsp1_rep	CDS	25142870	25142933	.	+	0	Parent=Os03t0648900-02
Chr03	irgsp1_rep	CDS	25143054	25143186	.	+	2	Parent=Os03t0648900-02
Chr03	irgsp1_rep	CDS	25143595	25143718	.	+	1	Parent=Os03t0648900-02
Chr03	irgsp1_rep	CDS	25144173	25144229	.	+	0	Parent=Os03t0648900-02
Chr03	irgsp1_rep	CDS	25144303	25144399	.	+	0	Parent=Os03t0648900-02
Chr03	irgsp1_rep	CDS	25144706	25144913	.	+	2	Parent=Os03t0648900-02
Chr03	irgsp1_rep	CDS	25145724	25145784	.	+	1	Parent=Os03t0648900-02
Chr03	irgsp1_rep	CDS	25145880	25145933	.	+	0	Parent=Os03t0648900-02
Chr03	irgsp1_rep	three_prime_UTR	25145934	25146392	.	+	.	Parent=Os03t0648900-02
Chr03	irgsp1_rep	mRNA	25147591	25151544	.	-	.	ID=Os03t0649000-01;Name=Os03t0649000-01;Locus_id=Os03g0649000;Note=Conserved hypothetical protein.;Transcript_evidence=AK318596 (DDBJ%2C Best hit);ORF_evidence=Q60DI5 (UniProt);NIAS_FLcDNA=J100062C23;TENOR=Os03t0649000-01;KEGG=Os03t0649000-01
Chr03	irgsp1_rep	five_prime_UTR	25151158	25151544	.	-	.	Parent=Os03t0649000-01
Chr03	irgsp1_rep	CDS	25150714	25151157	.	-	0	Parent=Os03t0649000-01
Chr03	irgsp1_rep	CDS	25149817	25149969	.	-	0	Parent=Os03t0649000-01
Chr03	irgsp1_rep	CDS	25149048	25149728	.	-	0	Parent=Os03t0649000-01
Chr03	irgsp1_rep	CDS	25147857	25148933	.	-	0	Parent=Os03t0649000-01
Chr03	irgsp1_rep	three_prime_UTR	25147591	25147856	.	-	.	Parent=Os03t0649000-01
Chr03	irgsp1_rep	mRNA	25147857	25151143	.	+	.	ID=Os03t0649050-00;Name=Os03t0649050-00;Locus_id=Os03g0649050;Note=Hypothetical protein.;Transcript_evidence=tplb0032b23 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0649050-00
Chr03	irgsp1_rep	five_prime_UTR	25147857	25148926	.	+	.	Parent=Os03t0649050-00
Chr03	irgsp1_rep	five_prime_UTR	25149050	25149744	.	+	.	Parent=Os03t0649050-00
Chr03	irgsp1_rep	five_prime_UTR	25149831	25149960	.	+	.	Parent=Os03t0649050-00
Chr03	irgsp1_rep	five_prime_UTR	25150703	25150705	.	+	.	Parent=Os03t0649050-00
Chr03	irgsp1_rep	CDS	25150706	25150866	.	+	0	Parent=Os03t0649050-00
Chr03	irgsp1_rep	CDS	25150963	25151143	.	+	1	Parent=Os03t0649050-00
Chr03	irgsp1_rep	mRNA	25169665	25171548	.	-	.	ID=Os03t0649275-01;Name=Os03t0649275-01;Locus_id=Os03g0649275;Note=Hypothetical gene.;Transcript_evidence=AK288260 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J090015P03;TENOR=Os03t0649275-01;KEGG=Os03t0649275-01
Chr03	irgsp1_rep	five_prime_UTR	25170198	25171548	.	-	.	Parent=Os03t0649275-01
Chr03	irgsp1_rep	CDS	25169955	25170197	.	-	0	Parent=Os03t0649275-01
Chr03	irgsp1_rep	three_prime_UTR	25169665	25169954	.	-	.	Parent=Os03t0649275-01
Chr03	irgsp1_rep	mRNA	25182251	25184869	.	+	.	ID=Os03t0649450-01;Name=Os03t0649450-01;Locus_id=Os03g0649450;Note=Non-protein coding transcript.;Transcript_evidence=AK288727 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090063D14;TENOR=Os03t0649450-01
Chr03	irgsp1_rep	exon	25182251	25184869	.	+	.	Parent=Os03t0649450-01
Chr03	irgsp1_rep	mRNA	25197057	25206948	.	+	.	ID=Os03t0650000-01;Name=Os03t0650000-01;Locus_id=Os03g0650000;RAP-DB Gene Symbol Synonym(s)=OsSh1%2C OsYAB2;RAP-DB Gene Name Synonym(s)=Shattering1%2C OsYABBY2;CGSNL Gene Symbol=SH1;CGSNL Gene Name=SHATTERING1;Oryzabase Gene Symbol Synonym(s)=YAB2%2C OsYAB2%2C OsSh1%2C Sh1%2C OsFIL2%2C OsSH1%2C Osh1;Oryzabase Gene Name Synonym(s)=YABBY2%2C YABBY 2%2C OsYABBY2%2C Os YABBY2%2C Shattering1%2C Shattering 1%2C FIL homolog 2;Note=YABBY transcription factor%2C Control of seed shattering;Transcript_evidence=AK070258,AB274014;ORF_evidence=Q10FZ7;GO=Biological Process: multicellular organism development (GO:0007275);InterPro=High mobility group box domain superfamily (IPR036910),YABBY protein (IPR006780);NIAS_FLcDNA=J023044A02;Manual Curation=October 16%2C 2017;Literature_PMID=22581231,17216490;Oryzabase=10360;Expression=AK070258;TENOR=Os03t0650000-01;KEGG=Os03t0650000-01
Chr03	irgsp1_rep	five_prime_UTR	25197057	25197451	.	+	.	Parent=Os03t0650000-01
Chr03	irgsp1_rep	CDS	25197452	25197526	.	+	0	Parent=Os03t0650000-01
Chr03	irgsp1_rep	CDS	25201260	25201382	.	+	0	Parent=Os03t0650000-01
Chr03	irgsp1_rep	CDS	25202750	25202876	.	+	0	Parent=Os03t0650000-01
Chr03	irgsp1_rep	CDS	25205693	25205741	.	+	2	Parent=Os03t0650000-01
Chr03	irgsp1_rep	CDS	25205899	25205974	.	+	1	Parent=Os03t0650000-01
Chr03	irgsp1_rep	CDS	25206537	25206647	.	+	0	Parent=Os03t0650000-01
Chr03	irgsp1_rep	three_prime_UTR	25206648	25206948	.	+	.	Parent=Os03t0650000-01
Chr03	irgsp1_rep	mRNA	25197174	25206948	.	+	.	ID=Os03t0650000-02;Name=Os03t0650000-02;Locus_id=Os03g0650000;CGSNL Gene Symbol=SH1;CGSNL Gene Name=SHATTERING1;Oryzabase Gene Symbol Synonym(s)=YAB2%2C OsYAB2%2C OsSh1%2C Sh1%2C OsFIL2%2C OsSH1%2C Osh1;Oryzabase Gene Name Synonym(s)=YABBY2%2C YABBY 2%2C OsYABBY2%2C Os YABBY2%2C Shattering1%2C Shattering 1%2C FIL homolog 2;Note=Similar to Yabby9 protein.;Transcript_evidence=AK070479 (DDBJ%2C Best hit);ORF_evidence=Q10FZ7 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=High mobility group%2C HMG1/HMG2 (IPR000910),YABBY protein (IPR006780),High mobility group%2C superfamily (IPR009071);NIAS_FLcDNA=J023050P10;Oryzabase=10360;Expression=AK070479;TENOR=Os03t0650000-02;KEGG=Os03t0650000-02
Chr03	irgsp1_rep	five_prime_UTR	25197174	25197451	.	+	.	Parent=Os03t0650000-02
Chr03	irgsp1_rep	CDS	25197452	25197526	.	+	0	Parent=Os03t0650000-02
Chr03	irgsp1_rep	CDS	25201260	25201382	.	+	0	Parent=Os03t0650000-02
Chr03	irgsp1_rep	CDS	25202750	25202876	.	+	0	Parent=Os03t0650000-02
Chr03	irgsp1_rep	CDS	25205693	25205741	.	+	2	Parent=Os03t0650000-02
Chr03	irgsp1_rep	CDS	25205899	25205974	.	+	1	Parent=Os03t0650000-02
Chr03	irgsp1_rep	CDS	25206537	25206647	.	+	0	Parent=Os03t0650000-02
Chr03	irgsp1_rep	three_prime_UTR	25206648	25206948	.	+	.	Parent=Os03t0650000-02
Chr03	irgsp1_rep	mRNA	25219692	25221526	.	-	.	ID=Os03t0650200-01;Name=Os03t0650200-01;Locus_id=Os03g0650200;RAP-DB Gene Symbol Synonym(s)=OsCYP92C21;Note=CytoChrome P450%2C Homoterpene biosynthesis%2C Attraction of natural enemies of herbivores in plant indirect defense;Transcript_evidence=Inferred from literature;ORF_evidence=Q53KW6;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 superfamily (IPR036396),CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);Manual Curation=October 29%2C 2020;Literature_PMID=33099790;TENOR=Os03t0650200-00;Subcellular location=endoplasmic reticulum (GO:0005783)
Chr03	irgsp1_rep	CDS	25219913	25221526	.	-	0	Parent=Os03t0650200-01
Chr03	irgsp1_rep	three_prime_UTR	25219692	25219912	.	-	.	Parent=Os03t0650200-01
Chr03	irgsp1_rep	mRNA	25227501	25228258	.	-	.	ID=Os03t0650300-00;Name=Os03t0650300-00;Locus_id=Os03g0650300;Note=Hypothetical conserved gene.;Transcript_evidence=tplb0014g09 (Wheat FLcDNA);ORF_evidence=Q43713 (UniProt);TENOR=Os03t0650300-00;KEGG=Os03t0650300-00
Chr03	irgsp1_rep	five_prime_UTR	25228244	25228258	.	-	.	Parent=Os03t0650300-00
Chr03	irgsp1_rep	CDS	25227581	25228243	.	-	0	Parent=Os03t0650300-00
Chr03	irgsp1_rep	three_prime_UTR	25227501	25227580	.	-	.	Parent=Os03t0650300-00
Chr03	irgsp1_rep	mRNA	25227577	25228502	.	+	.	ID=Os03t0650350-00;Name=Os03t0650350-00;Locus_id=Os03g0650350;Note=Hypothetical gene.;Transcript_evidence=EU947173 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0650350-00;KEGG=Os03t0650350-00
Chr03	irgsp1_rep	five_prime_UTR	25227577	25228013	.	+	.	Parent=Os03t0650350-00
Chr03	irgsp1_rep	CDS	25228014	25228325	.	+	0	Parent=Os03t0650350-00
Chr03	irgsp1_rep	three_prime_UTR	25228326	25228502	.	+	.	Parent=Os03t0650350-00
Chr03	irgsp1_rep	mRNA	25234046	25240194	.	+	.	ID=Os03t0650400-01;Name=Os03t0650400-01;Locus_id=Os03g0650400;Oryzabase Gene Symbol Synonym(s)=OsAM1%2C SWI1%2C Osam1%2C AM1;Oryzabase Gene Name Synonym(s)=AMEIOTIC1;Note=Similar to ameiotic 1.;Transcript_evidence=AK064367 (DDBJ%2C Best hit);ORF_evidence=NP_001139538.1 (RefSeq);NIAS_FLcDNA=002-108-C06;Oryzabase=10374;Expression=AK064367;TENOR=Os03t0650400-01;KEGG=Os03t0650400-01
Chr03	irgsp1_rep	five_prime_UTR	25234046	25234150	.	+	.	Parent=Os03t0650400-01
Chr03	irgsp1_rep	five_prime_UTR	25234465	25234482	.	+	.	Parent=Os03t0650400-01
Chr03	irgsp1_rep	CDS	25234483	25234542	.	+	0	Parent=Os03t0650400-01
Chr03	irgsp1_rep	CDS	25235919	25236078	.	+	0	Parent=Os03t0650400-01
Chr03	irgsp1_rep	CDS	25236203	25236279	.	+	2	Parent=Os03t0650400-01
Chr03	irgsp1_rep	CDS	25236411	25237510	.	+	0	Parent=Os03t0650400-01
Chr03	irgsp1_rep	CDS	25237624	25237708	.	+	1	Parent=Os03t0650400-01
Chr03	irgsp1_rep	CDS	25238155	25238217	.	+	0	Parent=Os03t0650400-01
Chr03	irgsp1_rep	CDS	25238647	25238730	.	+	0	Parent=Os03t0650400-01
Chr03	irgsp1_rep	CDS	25238817	25239407	.	+	0	Parent=Os03t0650400-01
Chr03	irgsp1_rep	CDS	25239622	25239750	.	+	0	Parent=Os03t0650400-01
Chr03	irgsp1_rep	three_prime_UTR	25239751	25240194	.	+	.	Parent=Os03t0650400-01
Chr03	irgsp1_rep	mRNA	25234081	25240155	.	+	.	ID=Os03t0650400-02;Name=Os03t0650400-02;Locus_id=Os03g0650400;RAP-DB Gene Symbol Synonym(s)=OsAM1;RAP-DB Gene Name Synonym(s)=AMEIOTIC1;Oryzabase Gene Symbol Synonym(s)=OsAM1%2C SWI1%2C Osam1%2C AM1;Oryzabase Gene Name Synonym(s)=AMEIOTIC1;Note=Homolog of Arabidopsis SWI1 and maize AM1%2C Fundamental role in building the proper Chromosome structure at the beginning of meiosis%2C Required for the leptotene-zygotene transition;Transcript_evidence=AK101644;ORF_evidence=Q53KW9;NIAS_FLcDNA=J033055N07;Manual Curation=September 24%2C 2020;Literature_PMID=21221128;Oryzabase=10374;Expression=AK101644;TENOR=Os03t0650400-02;Subcellular location=nucleus (GO:0005634),Chromosome (GO:0005694)
Chr03	irgsp1_rep	five_prime_UTR	25234081	25234150	.	+	.	Parent=Os03t0650400-02
Chr03	irgsp1_rep	five_prime_UTR	25234465	25234482	.	+	.	Parent=Os03t0650400-02
Chr03	irgsp1_rep	CDS	25234483	25234542	.	+	0	Parent=Os03t0650400-02
Chr03	irgsp1_rep	CDS	25235919	25236078	.	+	0	Parent=Os03t0650400-02
Chr03	irgsp1_rep	CDS	25236203	25236279	.	+	2	Parent=Os03t0650400-02
Chr03	irgsp1_rep	CDS	25236411	25237510	.	+	0	Parent=Os03t0650400-02
Chr03	irgsp1_rep	CDS	25237624	25237708	.	+	1	Parent=Os03t0650400-02
Chr03	irgsp1_rep	CDS	25238155	25238217	.	+	0	Parent=Os03t0650400-02
Chr03	irgsp1_rep	CDS	25238386	25238448	.	+	0	Parent=Os03t0650400-02
Chr03	irgsp1_rep	CDS	25238647	25238730	.	+	0	Parent=Os03t0650400-02
Chr03	irgsp1_rep	CDS	25238817	25239407	.	+	0	Parent=Os03t0650400-02
Chr03	irgsp1_rep	CDS	25239622	25239750	.	+	0	Parent=Os03t0650400-02
Chr03	irgsp1_rep	three_prime_UTR	25239751	25240155	.	+	.	Parent=Os03t0650400-02
Chr03	irgsp1_rep	mRNA	25250967	25254279	.	+	.	ID=Os03t0650700-01;Name=Os03t0650700-01;Locus_id=Os03g0650700;Note=Translation elongation factor EFG/EF2%2C C-terminal domain containing protein.;Transcript_evidence=AK102195 (DDBJ%2C Best hit);ORF_evidence=XP_002885535.1 (RefSeq);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Translation elongation factor EFG/EF2%2C C-terminal (IPR000640),Protein synthesis factor%2C GTP-binding (IPR000795),Translation elongation factor EFTu/EF1A%2C domain 2 (IPR004161),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Elongation factor G/III/V (IPR009022),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=J033087C22;Expression=AK102195;TENOR=Os03t0650700-01;KEGG=Os03t0650700-01 (EC:3.6.5.3)
Chr03	irgsp1_rep	five_prime_UTR	25250967	25251104	.	+	.	Parent=Os03t0650700-01
Chr03	irgsp1_rep	CDS	25251105	25254194	.	+	0	Parent=Os03t0650700-01
Chr03	irgsp1_rep	three_prime_UTR	25254195	25254279	.	+	.	Parent=Os03t0650700-01
Chr03	irgsp1_rep	mRNA	25264262	25267488	.	+	.	ID=Os03t0650800-00;Name=Os03t0650800-00;Locus_id=Os03g0650800;Note=Protein of unknown function DUF593 family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001050787.1 (RefSeq);InterPro=Protein of unknown function DUF593 (IPR007656);TENOR=Os03t0650800-00;KEGG=Os03t0650800-00
Chr03	irgsp1_rep	CDS	25264262	25265620	.	+	0	Parent=Os03t0650800-00
Chr03	irgsp1_rep	CDS	25267264	25267313	.	+	0	Parent=Os03t0650800-00
Chr03	irgsp1_rep	CDS	25267395	25267488	.	+	1	Parent=Os03t0650800-00
Chr03	irgsp1_rep	mRNA	25267550	25267893	.	+	.	ID=Os03t0650850-01;Name=Os03t0650850-01;Locus_id=Os03g0650850;Note=Non-protein coding transcript.;Transcript_evidence=AK242527 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080315D24;TENOR=Os03t0650850-01
Chr03	irgsp1_rep	exon	25267550	25267893	.	+	.	Parent=Os03t0650850-01
Chr03	irgsp1_rep	mRNA	25268199	25272892	.	-	.	ID=Os03t0650900-01;Name=Os03t0650900-01;Locus_id=Os03g0650900;RAP-DB Gene Symbol Synonym(s)=OsNLA2;RAP-DB Gene Name Synonym(s)=nitrogen limitation adaptation 2;Oryzabase Gene Symbol Synonym(s)=OsRFPHC-1%2C OsNLA2%2C NLA2;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPHC-1%2C RING-HC protein 1;Note=Ortholog of Arabidopsis NLA (AtNLA)%2C RING-type E3 ubiquitin-ligase;Transcript_evidence=AK103022;ORF_evidence=Q7XZZ3;InterPro=E3 ubiquitin-protein ligase BAH1 (IPR033326),SPX domain (IPR004331),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841),RING-type zinc-finger%2C LisH dimerisation motif (IPR027370),Zinc finger%2C RING-type%2C conserved site (IPR017907);NIAS_FLcDNA=J033117A10;Manual Curation=May 8%2C 2017;Literature_PMID=28229491;Oryzabase=11786;Expression=AK103022;TENOR=Os03t0650900-01;KEGG=Os03t0650900-01 (EC:2.3.2.27);Subcellular location=cellular_component (GO:0005575) [whole cell]
Chr03	irgsp1_rep	five_prime_UTR	25272793	25272892	.	-	.	Parent=Os03t0650900-01
Chr03	irgsp1_rep	five_prime_UTR	25271169	25271173	.	-	.	Parent=Os03t0650900-01
Chr03	irgsp1_rep	CDS	25270961	25271168	.	-	0	Parent=Os03t0650900-01
Chr03	irgsp1_rep	CDS	25270149	25270393	.	-	2	Parent=Os03t0650900-01
Chr03	irgsp1_rep	CDS	25269806	25270069	.	-	0	Parent=Os03t0650900-01
Chr03	irgsp1_rep	CDS	25269135	25269272	.	-	0	Parent=Os03t0650900-01
Chr03	irgsp1_rep	CDS	25268806	25268864	.	-	0	Parent=Os03t0650900-01
Chr03	irgsp1_rep	CDS	25268605	25268710	.	-	1	Parent=Os03t0650900-01
Chr03	irgsp1_rep	three_prime_UTR	25268199	25268604	.	-	.	Parent=Os03t0650900-01
Chr03	irgsp1_rep	mRNA	25276432	25278489	.	+	.	ID=Os03t0651000-01;Name=Os03t0651000-01;Locus_id=Os03g0651000;Note=Glu-tRNAGln amidotransferase%2C C subunit family protein.;Transcript_evidence=AK120336 (DDBJ%2C Best hit);ORF_evidence=B6U236 (UniProt);GO=Biological Process: regulation of translational fidelity (GO:0006450);InterPro=Glu-tRNAGln amidotransferase%2C C subunit (IPR003837);NIAS_FLcDNA=J013059M23;Expression=AK120336;TENOR=Os03t0651000-01;KEGG=Os03t0651000-01 (EC:6.3.5.6%2C EC:6.3.5.7)
Chr03	irgsp1_rep	five_prime_UTR	25276432	25276524	.	+	.	Parent=Os03t0651000-01
Chr03	irgsp1_rep	CDS	25276525	25276758	.	+	0	Parent=Os03t0651000-01
Chr03	irgsp1_rep	CDS	25276866	25276906	.	+	0	Parent=Os03t0651000-01
Chr03	irgsp1_rep	CDS	25277300	25277355	.	+	1	Parent=Os03t0651000-01
Chr03	irgsp1_rep	CDS	25278095	25278149	.	+	2	Parent=Os03t0651000-01
Chr03	irgsp1_rep	CDS	25278230	25278305	.	+	1	Parent=Os03t0651000-01
Chr03	irgsp1_rep	three_prime_UTR	25278306	25278489	.	+	.	Parent=Os03t0651000-01
Chr03	irgsp1_rep	mRNA	25279444	25286387	.	-	.	ID=Os03t0651100-01;Name=Os03t0651100-01;Locus_id=Os03g0651100;Oryzabase Gene Symbol Synonym(s)=OsRhmbd9%2C RHMBD9;Oryzabase Gene Name Synonym(s)=Rhomboid 9%2C RHOMBOID 9;Note=Peptidase S54%2C rhomboid domain containing protein.;Transcript_evidence=AK100923 (DDBJ%2C Best hit);ORF_evidence=B6TE56 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S54%2C rhomboid domain (IPR022764);NIAS_FLcDNA=J023133P16;Oryzabase=20065;Expression=AK100923;TENOR=Os03t0651100-01;KEGG=Os03t0651100-01
Chr03	irgsp1_rep	five_prime_UTR	25286164	25286387	.	-	.	Parent=Os03t0651100-01
Chr03	irgsp1_rep	CDS	25286140	25286163	.	-	0	Parent=Os03t0651100-01
Chr03	irgsp1_rep	CDS	25285458	25285623	.	-	0	Parent=Os03t0651100-01
Chr03	irgsp1_rep	CDS	25284656	25284959	.	-	2	Parent=Os03t0651100-01
Chr03	irgsp1_rep	CDS	25283793	25283825	.	-	1	Parent=Os03t0651100-01
Chr03	irgsp1_rep	CDS	25283620	25283703	.	-	1	Parent=Os03t0651100-01
Chr03	irgsp1_rep	CDS	25283461	25283518	.	-	1	Parent=Os03t0651100-01
Chr03	irgsp1_rep	three_prime_UTR	25283445	25283460	.	-	.	Parent=Os03t0651100-01
Chr03	irgsp1_rep	three_prime_UTR	25283244	25283352	.	-	.	Parent=Os03t0651100-01
Chr03	irgsp1_rep	three_prime_UTR	25283080	25283164	.	-	.	Parent=Os03t0651100-01
Chr03	irgsp1_rep	three_prime_UTR	25280507	25282534	.	-	.	Parent=Os03t0651100-01
Chr03	irgsp1_rep	three_prime_UTR	25280372	25280425	.	-	.	Parent=Os03t0651100-01
Chr03	irgsp1_rep	three_prime_UTR	25279856	25279930	.	-	.	Parent=Os03t0651100-01
Chr03	irgsp1_rep	three_prime_UTR	25279444	25279757	.	-	.	Parent=Os03t0651100-01
Chr03	irgsp1_rep	mRNA	25290922	25296331	.	-	.	ID=Os03t0651201-01;Name=Os03t0651201-01;Locus_id=Os03g0651201;Note=Hypothetical protein.;Transcript_evidence=AK288397 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090028B18;TENOR=Os03t0651201-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	25294779	25296331	.	-	.	Parent=Os03t0651201-01
Chr03	irgsp1_rep	CDS	25294359	25294778	.	-	0	Parent=Os03t0651201-01
Chr03	irgsp1_rep	three_prime_UTR	25290922	25294358	.	-	.	Parent=Os03t0651201-01
Chr03	irgsp1_rep	mRNA	25297660	25301859	.	-	.	ID=Os03t0651300-01;Name=Os03t0651300-01;Locus_id=Os03g0651300;Note=Protein of unknown function DUF580 family protein.;Transcript_evidence=AK068866 (DDBJ%2C Best hit);ORF_evidence=A2XK59 (UniProt);InterPro=Choline transporter-like (IPR007603);NIAS_FLcDNA=J023001M15;Expression=AK068866;TENOR=Os03t0651300-01;KEGG=Os03t0651300-01
Chr03	irgsp1_rep	five_prime_UTR	25301799	25301859	.	-	.	Parent=Os03t0651300-01
Chr03	irgsp1_rep	CDS	25301688	25301798	.	-	0	Parent=Os03t0651300-01
Chr03	irgsp1_rep	CDS	25298765	25299967	.	-	0	Parent=Os03t0651300-01
Chr03	irgsp1_rep	CDS	25298065	25298202	.	-	0	Parent=Os03t0651300-01
Chr03	irgsp1_rep	three_prime_UTR	25297660	25298064	.	-	.	Parent=Os03t0651300-01
Chr03	irgsp1_rep	mRNA	25312532	25313578	.	-	.	ID=Os03t0651700-01;Name=Os03t0651700-01;Locus_id=Os03g0651700;Note=Conserved hypothetical protein.;Transcript_evidence=AK059828 (DDBJ%2C Best hit);ORF_evidence=Q7XZY3 (UniProt);NIAS_FLcDNA=006-205-H05;Expression=AK059828;TENOR=Os03t0651700-01;KEGG=Os03t0651700-01
Chr03	irgsp1_rep	five_prime_UTR	25313577	25313578	.	-	.	Parent=Os03t0651700-01
Chr03	irgsp1_rep	CDS	25313319	25313576	.	-	0	Parent=Os03t0651700-01
Chr03	irgsp1_rep	three_prime_UTR	25312532	25313318	.	-	.	Parent=Os03t0651700-01
Chr03	irgsp1_rep	mRNA	25315697	25317065	.	+	.	ID=Os03t0651800-00;Name=Os03t0651800-00;Locus_id=Os03g0651800;CGSNL Gene Symbol=GLP3-2;CGSNL Gene Name=GERMIN-LIKE PROTEIN 3-2;Oryzabase Gene Symbol Synonym(s)=OsGLP3-2;Oryzabase Gene Name Synonym(s)=Germin-like protein 3-2;Note=Similar to Germin-like protein subfamily 2 member 1 precursor.;Transcript_evidence=Q942A8 (UniProt);ORF_evidence=Q942A8 (UniProt);GO=Cellular Component: apoplast (GO:0048046),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),Germin%2C manganese binding site (IPR019780);Oryzabase=21424;TENOR=Os03t0651800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	25315697	25315820	.	+	0	Parent=Os03t0651800-00
Chr03	irgsp1_rep	CDS	25316521	25317065	.	+	2	Parent=Os03t0651800-00
Chr03	irgsp1_rep	mRNA	25319033	25319594	.	-	.	ID=Os03t0651900-01;Name=Os03t0651900-01;Locus_id=Os03g0651900;Note=Hypothetical gene.;Transcript_evidence=AK120557 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013131G24;Expression=AK120557;TENOR=Os03t0651900-01;KEGG=Os03t0651900-01
Chr03	irgsp1_rep	five_prime_UTR	25319594	25319594	.	-	.	Parent=Os03t0651900-01
Chr03	irgsp1_rep	CDS	25319366	25319593	.	-	0	Parent=Os03t0651900-01
Chr03	irgsp1_rep	three_prime_UTR	25319033	25319365	.	-	.	Parent=Os03t0651900-01
Chr03	irgsp1_rep	mRNA	25326669	25328681	.	+	.	ID=Os03t0651950-00;Name=Os03t0651950-00;Locus_id=Os03g0651950;Note=Hypothetical protein.;Transcript_evidence=tplb0048i05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0651950-00
Chr03	irgsp1_rep	five_prime_UTR	25326669	25327484	.	+	.	Parent=Os03t0651950-00
Chr03	irgsp1_rep	CDS	25327485	25328036	.	+	0	Parent=Os03t0651950-00
Chr03	irgsp1_rep	three_prime_UTR	25328037	25328681	.	+	.	Parent=Os03t0651950-00
Chr03	irgsp1_rep	mRNA	25328600	25330063	.	-	.	ID=Os03t0652000-02;Name=Os03t0652000-02;Locus_id=Os03g0652000;Note=C2 domain containing protein.;Transcript_evidence=AK110820 (DDBJ%2C Best hit),AK107712 (DDBJ%2C Best hit);ORF_evidence=Q7XZZ4 (UniProt);NIAS_FLcDNA=002-171-G11,002-132-D11;Expression=AK110820;TENOR=Os03t0652000-02;KEGG=Os03t0652000-02
Chr03	irgsp1_rep	five_prime_UTR	25329866	25330063	.	-	.	Parent=Os03t0652000-02
Chr03	irgsp1_rep	CDS	25328600	25329865	.	-	0	Parent=Os03t0652000-02
Chr03	irgsp1_rep	mRNA	25334335	25344927	.	-	.	ID=Os03t0652050-00;Name=Os03t0652050-00;Locus_id=Os03g0652050;Note=Hypothetical protein.;Transcript_evidence=tplb0027h02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0652050-00
Chr03	irgsp1_rep	five_prime_UTR	25344755	25344927	.	-	.	Parent=Os03t0652050-00
Chr03	irgsp1_rep	five_prime_UTR	25344412	25344577	.	-	.	Parent=Os03t0652050-00
Chr03	irgsp1_rep	five_prime_UTR	25344151	25344299	.	-	.	Parent=Os03t0652050-00
Chr03	irgsp1_rep	five_prime_UTR	25343800	25344069	.	-	.	Parent=Os03t0652050-00
Chr03	irgsp1_rep	five_prime_UTR	25341655	25341790	.	-	.	Parent=Os03t0652050-00
Chr03	irgsp1_rep	five_prime_UTR	25341469	25341507	.	-	.	Parent=Os03t0652050-00
Chr03	irgsp1_rep	five_prime_UTR	25340946	25341094	.	-	.	Parent=Os03t0652050-00
Chr03	irgsp1_rep	five_prime_UTR	25340202	25340612	.	-	.	Parent=Os03t0652050-00
Chr03	irgsp1_rep	CDS	25339980	25340201	.	-	0	Parent=Os03t0652050-00
Chr03	irgsp1_rep	three_prime_UTR	25339849	25339979	.	-	.	Parent=Os03t0652050-00
Chr03	irgsp1_rep	three_prime_UTR	25339375	25339448	.	-	.	Parent=Os03t0652050-00
Chr03	irgsp1_rep	three_prime_UTR	25339180	25339288	.	-	.	Parent=Os03t0652050-00
Chr03	irgsp1_rep	three_prime_UTR	25338928	25339068	.	-	.	Parent=Os03t0652050-00
Chr03	irgsp1_rep	three_prime_UTR	25338712	25338830	.	-	.	Parent=Os03t0652050-00
Chr03	irgsp1_rep	three_prime_UTR	25336700	25336825	.	-	.	Parent=Os03t0652050-00
Chr03	irgsp1_rep	three_prime_UTR	25334673	25334796	.	-	.	Parent=Os03t0652050-00
Chr03	irgsp1_rep	three_prime_UTR	25334335	25334496	.	-	.	Parent=Os03t0652050-00
Chr03	irgsp1_rep	mRNA	25334373	25344979	.	+	.	ID=Os03t0652100-01;Name=Os03t0652100-01;Locus_id=Os03g0652100;Oryzabase Gene Name Synonym(s)=OsCullin1;Note=Not CCR4-Not complex component%2C N-terminal domain containing protein.;Transcript_evidence=AK102019 (DDBJ%2C Best hit);ORF_evidence=Q10FX7 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634);InterPro=Not CCR4-Not complex component%2C N-terminal (IPR007207),NOT2/NOT3/NOT5 (IPR007282),CCR4-NOT complex%2C subunit 3/ 5 (IPR012270);NIAS_FLcDNA=J033080H16;Oryzabase=18282;Expression=AK102019;TENOR=Os03t0652100-01;KEGG=Os03t0652100-01
Chr03	irgsp1_rep	five_prime_UTR	25334373	25334400	.	+	.	Parent=Os03t0652100-01
Chr03	irgsp1_rep	CDS	25334401	25334491	.	+	0	Parent=Os03t0652100-01
Chr03	irgsp1_rep	CDS	25334665	25334798	.	+	2	Parent=Os03t0652100-01
Chr03	irgsp1_rep	CDS	25336702	25336818	.	+	0	Parent=Os03t0652100-01
Chr03	irgsp1_rep	CDS	25338278	25338328	.	+	0	Parent=Os03t0652100-01
Chr03	irgsp1_rep	CDS	25338749	25338838	.	+	0	Parent=Os03t0652100-01
Chr03	irgsp1_rep	CDS	25338941	25339087	.	+	0	Parent=Os03t0652100-01
Chr03	irgsp1_rep	CDS	25339195	25339305	.	+	0	Parent=Os03t0652100-01
Chr03	irgsp1_rep	CDS	25339394	25339462	.	+	0	Parent=Os03t0652100-01
Chr03	irgsp1_rep	CDS	25339864	25340604	.	+	0	Parent=Os03t0652100-01
Chr03	irgsp1_rep	CDS	25340927	25341091	.	+	0	Parent=Os03t0652100-01
Chr03	irgsp1_rep	CDS	25341463	25341529	.	+	0	Parent=Os03t0652100-01
Chr03	irgsp1_rep	CDS	25341667	25341791	.	+	2	Parent=Os03t0652100-01
Chr03	irgsp1_rep	CDS	25343801	25344070	.	+	0	Parent=Os03t0652100-01
Chr03	irgsp1_rep	CDS	25344152	25344286	.	+	0	Parent=Os03t0652100-01
Chr03	irgsp1_rep	CDS	25344403	25344584	.	+	0	Parent=Os03t0652100-01
Chr03	irgsp1_rep	CDS	25344756	25344831	.	+	1	Parent=Os03t0652100-01
Chr03	irgsp1_rep	three_prime_UTR	25344832	25344979	.	+	.	Parent=Os03t0652100-01
Chr03	irgsp1_rep	mRNA	25356731	25358226	.	-	.	ID=Os03t0652400-00;Name=Os03t0652400-00;Locus_id=Os03g0652400;Oryzabase Gene Symbol Synonym(s)=OsFbox158%2C Os_F0008;Oryzabase Gene Name Synonym(s)=F-box protein 158;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK374846 (DDBJ);ORF_evidence=Q7XZY8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=16947;TENOR=Os03t0652400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	25357468	25358226	.	-	0	Parent=Os03t0652400-00
Chr03	irgsp1_rep	three_prime_UTR	25357138	25357467	.	-	.	Parent=Os03t0652400-00
Chr03	irgsp1_rep	three_prime_UTR	25356731	25357071	.	-	.	Parent=Os03t0652400-00
Chr03	irgsp1_rep	mRNA	25376204	25376854	.	-	.	ID=Os03t0652600-00;Name=Os03t0652600-00;Locus_id=Os03g0652600;Note=Similar to Not1 N-terminal domain%2C CCR4-Not complex component family protein%2C expressed.;Transcript_evidence=EU948310 (DDBJ);ORF_evidence=Q10FX7 (UniProt);TENOR=Os03t0652600-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	25376843	25376854	.	-	.	Parent=Os03t0652600-00
Chr03	irgsp1_rep	CDS	25376652	25376842	.	-	0	Parent=Os03t0652600-00
Chr03	irgsp1_rep	CDS	25376519	25376570	.	-	1	Parent=Os03t0652600-00
Chr03	irgsp1_rep	three_prime_UTR	25376439	25376518	.	-	.	Parent=Os03t0652600-00
Chr03	irgsp1_rep	three_prime_UTR	25376204	25376321	.	-	.	Parent=Os03t0652600-00
Chr03	irgsp1_rep	mRNA	25395294	25396720	.	+	.	ID=Os03t0653100-00;Name=Os03t0653100-00;Locus_id=Os03g0653100;Oryzabase Gene Symbol Synonym(s)=OsFbox159%2C Os_F0006;Oryzabase Gene Name Synonym(s)=F-box protein 159;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK374846 (DDBJ);ORF_evidence=A2XK64 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=16948;TENOR=Os03t0653100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	25395294	25395902	.	+	0	Parent=Os03t0653100-00
Chr03	irgsp1_rep	three_prime_UTR	25395903	25396382	.	+	.	Parent=Os03t0653100-00
Chr03	irgsp1_rep	three_prime_UTR	25396449	25396720	.	+	.	Parent=Os03t0653100-00
Chr03	irgsp1_rep	mRNA	25462885	25468265	.	+	.	ID=Os03t0653601-01;Name=Os03t0653601-01;Locus_id=Os03g0653601;Note=Non-protein coding transcript.;Transcript_evidence=AK242503 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080309A09;TENOR=Os03t0653601-01
Chr03	irgsp1_rep	exon	25462885	25463137	.	+	.	Parent=Os03t0653601-01
Chr03	irgsp1_rep	exon	25463464	25464290	.	+	.	Parent=Os03t0653601-01
Chr03	irgsp1_rep	exon	25465066	25465179	.	+	.	Parent=Os03t0653601-01
Chr03	irgsp1_rep	exon	25467092	25467157	.	+	.	Parent=Os03t0653601-01
Chr03	irgsp1_rep	exon	25467765	25467830	.	+	.	Parent=Os03t0653601-01
Chr03	irgsp1_rep	exon	25467916	25467976	.	+	.	Parent=Os03t0653601-01
Chr03	irgsp1_rep	exon	25468066	25468128	.	+	.	Parent=Os03t0653601-01
Chr03	irgsp1_rep	exon	25468231	25468265	.	+	.	Parent=Os03t0653601-01
Chr03	irgsp1_rep	mRNA	25463483	25464304	.	-	.	ID=Os03t0653900-00;Name=Os03t0653900-00;Locus_id=Os03g0653900;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FA32 (UniProt);GO=Biological Process: negative regulation of translation (GO:0017148),Molecular Function: rRNA N-glycosylase activity (GO:0030598);InterPro=Ribosome-inactivating protein (IPR001574),Ribosome-inactivating protein%2C subdomain 1 (IPR016138);TENOR=Os03t0653900-00;KEGG=Os03t0653900-00
Chr03	irgsp1_rep	CDS	25463483	25464304	.	-	0	Parent=Os03t0653900-00
Chr03	irgsp1_rep	mRNA	25504252	25509983	.	-	.	ID=Os03t0654400-01;Name=Os03t0654400-01;Locus_id=Os03g0654400;Oryzabase Gene Symbol Synonym(s)=OsCAT4%2C CAT4;Oryzabase Gene Name Synonym(s)=cationic amino acid transporter 4%2C MEU22 homolog;Note=Similar to Cationic amino acid transporter-like protein.;Transcript_evidence=AK066436 (DDBJ%2C Best hit);ORF_evidence=B6U1T8 (UniProt);GO=Biological Process: amino acid transmembrane transport (GO:0003333),Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: amino acid transmembrane transporter activity (GO:0015171);InterPro=Amino acid/polyamine transporter I (IPR002293),Amino acid permease domain (IPR004841),Cationic amino acid transporter (IPR015606);NIAS_FLcDNA=J013063A11;Oryzabase=18538;TENOR=Os03t0654400-01
Chr03	irgsp1_rep	five_prime_UTR	25509721	25509983	.	-	.	Parent=Os03t0654400-01
Chr03	irgsp1_rep	CDS	25509543	25509720	.	-	0	Parent=Os03t0654400-01
Chr03	irgsp1_rep	CDS	25508207	25508408	.	-	2	Parent=Os03t0654400-01
Chr03	irgsp1_rep	CDS	25507954	25508038	.	-	1	Parent=Os03t0654400-01
Chr03	irgsp1_rep	CDS	25507712	25507852	.	-	0	Parent=Os03t0654400-01
Chr03	irgsp1_rep	CDS	25507497	25507615	.	-	0	Parent=Os03t0654400-01
Chr03	irgsp1_rep	CDS	25507324	25507420	.	-	1	Parent=Os03t0654400-01
Chr03	irgsp1_rep	CDS	25507073	25507245	.	-	0	Parent=Os03t0654400-01
Chr03	irgsp1_rep	CDS	25506905	25506971	.	-	1	Parent=Os03t0654400-01
Chr03	irgsp1_rep	CDS	25505985	25506143	.	-	0	Parent=Os03t0654400-01
Chr03	irgsp1_rep	CDS	25505600	25505843	.	-	0	Parent=Os03t0654400-01
Chr03	irgsp1_rep	CDS	25505405	25505513	.	-	2	Parent=Os03t0654400-01
Chr03	irgsp1_rep	CDS	25505202	25505314	.	-	1	Parent=Os03t0654400-01
Chr03	irgsp1_rep	CDS	25505033	25505108	.	-	2	Parent=Os03t0654400-01
Chr03	irgsp1_rep	CDS	25504523	25504679	.	-	1	Parent=Os03t0654400-01
Chr03	irgsp1_rep	three_prime_UTR	25504252	25504522	.	-	.	Parent=Os03t0654400-01
Chr03	irgsp1_rep	mRNA	25504243	25509628	.	-	.	ID=Os03t0654400-02;Name=Os03t0654400-02;Locus_id=Os03g0654400;Oryzabase Gene Symbol Synonym(s)=OsCAT4%2C CAT4;Oryzabase Gene Name Synonym(s)=cationic amino acid transporter 4%2C MEU22 homolog;Note=Similar to High-affinity cationic amino acid transporter 1.;Transcript_evidence=AK066471 (DDBJ%2C Best hit);ORF_evidence=B6U1T8 (UniProt);GO=Biological Process: amino acid transmembrane transport (GO:0003333),Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: amino acid transmembrane transporter activity (GO:0015171);InterPro=Amino acid/polyamine transporter I (IPR002293),Amino acid permease domain (IPR004841),Cationic amino acid transporter (IPR015606);NIAS_FLcDNA=J013066A08;Oryzabase=18538;TENOR=Os03t0654400-02
Chr03	irgsp1_rep	five_prime_UTR	25509628	25509628	.	-	.	Parent=Os03t0654400-02
Chr03	irgsp1_rep	CDS	25509543	25509627	.	-	0	Parent=Os03t0654400-02
Chr03	irgsp1_rep	CDS	25508207	25508408	.	-	2	Parent=Os03t0654400-02
Chr03	irgsp1_rep	CDS	25507954	25508038	.	-	1	Parent=Os03t0654400-02
Chr03	irgsp1_rep	CDS	25507712	25507852	.	-	0	Parent=Os03t0654400-02
Chr03	irgsp1_rep	CDS	25507497	25507615	.	-	0	Parent=Os03t0654400-02
Chr03	irgsp1_rep	CDS	25507324	25507420	.	-	1	Parent=Os03t0654400-02
Chr03	irgsp1_rep	CDS	25507073	25507245	.	-	0	Parent=Os03t0654400-02
Chr03	irgsp1_rep	CDS	25506905	25506971	.	-	1	Parent=Os03t0654400-02
Chr03	irgsp1_rep	CDS	25505985	25506143	.	-	0	Parent=Os03t0654400-02
Chr03	irgsp1_rep	CDS	25505600	25505843	.	-	0	Parent=Os03t0654400-02
Chr03	irgsp1_rep	CDS	25505405	25505513	.	-	2	Parent=Os03t0654400-02
Chr03	irgsp1_rep	CDS	25505202	25505314	.	-	1	Parent=Os03t0654400-02
Chr03	irgsp1_rep	CDS	25505033	25505108	.	-	2	Parent=Os03t0654400-02
Chr03	irgsp1_rep	CDS	25504523	25504679	.	-	1	Parent=Os03t0654400-02
Chr03	irgsp1_rep	three_prime_UTR	25504243	25504522	.	-	.	Parent=Os03t0654400-02
Chr03	irgsp1_rep	mRNA	25512212	25517263	.	-	.	ID=Os03t0654500-01;Name=Os03t0654500-01;Locus_id=Os03g0654500;Note=Domain of unknown function DUF2215 domain containing protein.;Transcript_evidence=AK066127 (DDBJ%2C Best hit);ORF_evidence=A2XK73 (UniProt);InterPro=Domain of unknown function DUF2215 (IPR024233);NIAS_FLcDNA=J013052K14;Expression=AK066127;TENOR=Os03t0654500-01;KEGG=Os03t0654500-01
Chr03	irgsp1_rep	five_prime_UTR	25517181	25517263	.	-	.	Parent=Os03t0654500-01
Chr03	irgsp1_rep	CDS	25516952	25517180	.	-	0	Parent=Os03t0654500-01
Chr03	irgsp1_rep	CDS	25516120	25516312	.	-	2	Parent=Os03t0654500-01
Chr03	irgsp1_rep	CDS	25515891	25516048	.	-	1	Parent=Os03t0654500-01
Chr03	irgsp1_rep	CDS	25515636	25515781	.	-	2	Parent=Os03t0654500-01
Chr03	irgsp1_rep	CDS	25514996	25515058	.	-	0	Parent=Os03t0654500-01
Chr03	irgsp1_rep	CDS	25514794	25514886	.	-	0	Parent=Os03t0654500-01
Chr03	irgsp1_rep	CDS	25513549	25513710	.	-	0	Parent=Os03t0654500-01
Chr03	irgsp1_rep	CDS	25513326	25513423	.	-	0	Parent=Os03t0654500-01
Chr03	irgsp1_rep	CDS	25513087	25513247	.	-	1	Parent=Os03t0654500-01
Chr03	irgsp1_rep	CDS	25512533	25512849	.	-	2	Parent=Os03t0654500-01
Chr03	irgsp1_rep	three_prime_UTR	25512212	25512532	.	-	.	Parent=Os03t0654500-01
Chr03	irgsp1_rep	mRNA	25520279	25525342	.	-	.	ID=Os03t0654600-01;Name=Os03t0654600-01;Locus_id=Os03g0654600;CGSNL Gene Symbol=NOL;CGSNL Gene Name=NYC1-LIKE;Oryzabase Gene Symbol Synonym(s)=nol%2C NOL1%2C OsNOL%2C OsNOL1;Oryzabase Gene Name Synonym(s)=Non-Yellow Coloring 1 like%2C NYC1-like%2C "Chlorophyll(ide) b reductase NOL%2C chloroplastic"%2C Protein NON-YELLOW COLORING 1-LIKE%2C Protein NYC1-LIKE%2C Short-chain dehydrogenase/reductase NOL;Note=Similar to Myb-like DNA-binding domain%2C SHAQKYF class family protein%2C expressed.;Transcript_evidence=AK287869 (DDBJ%2C Best hit);ORF_evidence=Q84ST4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);NIAS_FLcDNA=J065203M24;Oryzabase=8683;TENOR=Os03t0654600-01;KEGG=Os03t0654600-01
Chr03	irgsp1_rep	five_prime_UTR	25525221	25525342	.	-	.	Parent=Os03t0654600-01
Chr03	irgsp1_rep	CDS	25524971	25525220	.	-	0	Parent=Os03t0654600-01
Chr03	irgsp1_rep	CDS	25524309	25524377	.	-	2	Parent=Os03t0654600-01
Chr03	irgsp1_rep	CDS	25523813	25523874	.	-	2	Parent=Os03t0654600-01
Chr03	irgsp1_rep	CDS	25523591	25523677	.	-	0	Parent=Os03t0654600-01
Chr03	irgsp1_rep	CDS	25523242	25523309	.	-	0	Parent=Os03t0654600-01
Chr03	irgsp1_rep	CDS	25523095	25523143	.	-	1	Parent=Os03t0654600-01
Chr03	irgsp1_rep	CDS	25522910	25522995	.	-	0	Parent=Os03t0654600-01
Chr03	irgsp1_rep	CDS	25522412	25522469	.	-	1	Parent=Os03t0654600-01
Chr03	irgsp1_rep	CDS	25521935	25521985	.	-	0	Parent=Os03t0654600-01
Chr03	irgsp1_rep	CDS	25521684	25521734	.	-	0	Parent=Os03t0654600-01
Chr03	irgsp1_rep	CDS	25521558	25521599	.	-	0	Parent=Os03t0654600-01
Chr03	irgsp1_rep	CDS	25520784	25520894	.	-	0	Parent=Os03t0654600-01
Chr03	irgsp1_rep	CDS	25520641	25520688	.	-	0	Parent=Os03t0654600-01
Chr03	irgsp1_rep	three_prime_UTR	25520279	25520640	.	-	.	Parent=Os03t0654600-01
Chr03	irgsp1_rep	mRNA	25526785	25530702	.	-	.	ID=Os03t0654700-01;Name=Os03t0654700-01;Locus_id=Os03g0654700;Oryzabase Gene Symbol Synonym(s)=OsEnS-50;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 50;Note=Protein of unknown function DUF1637 family protein.;Transcript_evidence=AK107417 (DDBJ%2C Best hit);ORF_evidence=A2XK75 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: cysteamine dioxygenase activity (GO:0047800);InterPro=Cupin%2C RmlC-type (IPR011051),Cysteamine dioxygenase (IPR012864),RmlC-like jelly roll fold (IPR014710);NIAS_FLcDNA=002-127-F03;Oryzabase=18376;Expression=AK107417;TENOR=Os03t0654700-01;KEGG=Os03t0654700-01
Chr03	irgsp1_rep	five_prime_UTR	25530614	25530702	.	-	.	Parent=Os03t0654700-01
Chr03	irgsp1_rep	five_prime_UTR	25530493	25530494	.	-	.	Parent=Os03t0654700-01
Chr03	irgsp1_rep	CDS	25530057	25530492	.	-	0	Parent=Os03t0654700-01
Chr03	irgsp1_rep	CDS	25527948	25528084	.	-	2	Parent=Os03t0654700-01
Chr03	irgsp1_rep	CDS	25527682	25527841	.	-	0	Parent=Os03t0654700-01
Chr03	irgsp1_rep	CDS	25527318	25527536	.	-	2	Parent=Os03t0654700-01
Chr03	irgsp1_rep	CDS	25527102	25527232	.	-	2	Parent=Os03t0654700-01
Chr03	irgsp1_rep	three_prime_UTR	25526785	25527101	.	-	.	Parent=Os03t0654700-01
Chr03	irgsp1_rep	mRNA	25537516	25538078	.	+	.	ID=Os03t0654800-01;Name=Os03t0654800-01;Locus_id=Os03g0654800;Note=Conserved hypothetical protein.;Transcript_evidence=AK103330 (DDBJ%2C Best hit);ORF_evidence=Q84ST7 (UniProt);NIAS_FLcDNA=J033125N05;TENOR=Os03t0654800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	25537516	25537517	.	+	.	Parent=Os03t0654800-01
Chr03	irgsp1_rep	CDS	25537518	25537886	.	+	0	Parent=Os03t0654800-01
Chr03	irgsp1_rep	three_prime_UTR	25537887	25538078	.	+	.	Parent=Os03t0654800-01
Chr03	irgsp1_rep	mRNA	25538864	25540143	.	+	.	ID=Os03t0654900-01;Name=Os03t0654900-01;Locus_id=Os03g0654900;CGSNL Gene Symbol=ODC4;CGSNL Gene Name=ORNITHINE DECARBOXYLASE 4;Oryzabase Gene Symbol Synonym(s)=OsODC4;Oryzabase Gene Name Synonym(s)=ornithine decarboxylase 4;Note=Conserved hypothetical protein.;Transcript_evidence=AK066712 (DDBJ%2C Best hit);ORF_evidence=B9FA38 (UniProt);NIAS_FLcDNA=J013078B10;Oryzabase=21661;TENOR=Os03t0654900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	25538864	25538879	.	+	.	Parent=Os03t0654900-01
Chr03	irgsp1_rep	CDS	25538880	25539461	.	+	0	Parent=Os03t0654900-01
Chr03	irgsp1_rep	three_prime_UTR	25539462	25540143	.	+	.	Parent=Os03t0654900-01
Chr03	irgsp1_rep	mRNA	25540108	25544767	.	-	.	ID=Os03t0655000-01;Name=Os03t0655000-01;Locus_id=Os03g0655000;Note=Hypothetical protein.;Transcript_evidence=AK288928 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090082F16;TENOR=Os03t0655000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	25541212	25544767	.	-	.	Parent=Os03t0655000-01
Chr03	irgsp1_rep	CDS	25540726	25541211	.	-	0	Parent=Os03t0655000-01
Chr03	irgsp1_rep	three_prime_UTR	25540108	25540725	.	-	.	Parent=Os03t0655000-01
Chr03	irgsp1_rep	mRNA	25547399	25548779	.	+	.	ID=Os03t0655100-00;Name=Os03t0655100-00;Locus_id=Os03g0655100;Note=Similar to Cupin%2C RmlC-type.;Transcript_evidence=EU963588 (DDBJ);ORF_evidence=B6TF23 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: cysteamine dioxygenase activity (GO:0047800);InterPro=Cupin%2C RmlC-type (IPR011051),Cysteamine dioxygenase (IPR012864),RmlC-like jelly roll fold (IPR014710);TENOR=Os03t0655100-00;KEGG=Os03t0655100-00 (EC:1.13.11.19)
Chr03	irgsp1_rep	five_prime_UTR	25547399	25547432	.	+	.	Parent=Os03t0655100-00
Chr03	irgsp1_rep	CDS	25547433	25547712	.	+	0	Parent=Os03t0655100-00
Chr03	irgsp1_rep	CDS	25547811	25547938	.	+	2	Parent=Os03t0655100-00
Chr03	irgsp1_rep	CDS	25548078	25548231	.	+	0	Parent=Os03t0655100-00
Chr03	irgsp1_rep	CDS	25548332	25548529	.	+	2	Parent=Os03t0655100-00
Chr03	irgsp1_rep	CDS	25548634	25548779	.	+	2	Parent=Os03t0655100-00
Chr03	irgsp1_rep	mRNA	25552429	25556486	.	-	.	ID=Os03t0655200-01;Name=Os03t0655200-01;Locus_id=Os03g0655200;Note=Similar to Membrin 11 (AtMEMB11) (Golgi SNAP receptor complex member 2-1) (27 kDa Golgi SNARE protein).;Transcript_evidence=AK111247 (DDBJ%2C Best hit);ORF_evidence=B6TMP4 (UniProt);NIAS_FLcDNA=002-180-D08;Expression=AK111247;TENOR=Os03t0655200-01;KEGG=Os03t0655200-01
Chr03	irgsp1_rep	five_prime_UTR	25556398	25556486	.	-	.	Parent=Os03t0655200-01
Chr03	irgsp1_rep	CDS	25556096	25556397	.	-	0	Parent=Os03t0655200-01
Chr03	irgsp1_rep	CDS	25553403	25553523	.	-	1	Parent=Os03t0655200-01
Chr03	irgsp1_rep	CDS	25553165	25553314	.	-	0	Parent=Os03t0655200-01
Chr03	irgsp1_rep	CDS	25552881	25553042	.	-	0	Parent=Os03t0655200-01
Chr03	irgsp1_rep	three_prime_UTR	25552429	25552880	.	-	.	Parent=Os03t0655200-01
Chr03	irgsp1_rep	mRNA	25558161	25560601	.	+	.	ID=Os03t0655300-00;Name=Os03t0655300-00;Locus_id=Os03g0655300;Note=CS domain domain containing protein.;Transcript_evidence=BT061748 (DDBJ);ORF_evidence=B6T9V0 (UniProt);InterPro=CS-like domain (IPR007052),HSP20-like chaperone (IPR008978),CS domain (IPR017447);TENOR=Os03t0655300-00;KEGG=Os03t0655300-00
Chr03	irgsp1_rep	CDS	25558161	25558367	.	+	0	Parent=Os03t0655300-00
Chr03	irgsp1_rep	CDS	25558822	25558978	.	+	0	Parent=Os03t0655300-00
Chr03	irgsp1_rep	CDS	25559810	25559844	.	+	2	Parent=Os03t0655300-00
Chr03	irgsp1_rep	CDS	25559953	25559998	.	+	0	Parent=Os03t0655300-00
Chr03	irgsp1_rep	CDS	25560427	25560461	.	+	2	Parent=Os03t0655300-00
Chr03	irgsp1_rep	three_prime_UTR	25560462	25560601	.	+	.	Parent=Os03t0655300-00
Chr03	irgsp1_rep	mRNA	25563660	25564431	.	+	.	ID=Os03t0655400-01;Name=Os03t0655400-01;Locus_id=Os03g0655400;CGSNL Gene Symbol=LEA24;CGSNL Gene Name=LATE EMBRYOGENESIS ABUNDANT PROTEIN 24;Oryzabase Gene Symbol Synonym(s)=OsLEA24%2C WSI724;Oryzabase Gene Name Synonym(s)=late embryogenesis abundant protein 24%2C water stress-induced 724%2C WATER STRESS INDUCIBLE PROTEIN 724;Note=Similar to LIP5.;Transcript_evidence=AK059150 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=001-023-B08;Oryzabase=10188;Expression=AK059150;TENOR=Os03t0655400-01;KEGG=Os03t0655400-01
Chr03	irgsp1_rep	five_prime_UTR	25563660	25563739	.	+	.	Parent=Os03t0655400-01
Chr03	irgsp1_rep	CDS	25563740	25564018	.	+	0	Parent=Os03t0655400-01
Chr03	irgsp1_rep	three_prime_UTR	25564019	25564061	.	+	.	Parent=Os03t0655400-01
Chr03	irgsp1_rep	three_prime_UTR	25564215	25564431	.	+	.	Parent=Os03t0655400-01
Chr03	irgsp1_rep	mRNA	25570221	25572205	.	+	.	ID=Os03t0655500-00;Name=Os03t0655500-00;Locus_id=Os03g0655500;Note=Ankyrin domain containing protein.;Transcript_evidence=BT086593 (DDBJ);ORF_evidence=B6SWZ3 (UniProt);GO=Molecular Function: structural molecule activity (GO:0005198),Molecular Function: protein binding (GO:0005515);InterPro=Major sperm protein (IPR000535),Ankyrin repeat (IPR002110),PapD-like (IPR008962),Ankyrin repeat-containing domain (IPR020683);TENOR=Os03t0655500-00;KEGG=Os03t0655500-00
Chr03	irgsp1_rep	five_prime_UTR	25570221	25570410	.	+	.	Parent=Os03t0655500-00
Chr03	irgsp1_rep	CDS	25570411	25572081	.	+	0	Parent=Os03t0655500-00
Chr03	irgsp1_rep	three_prime_UTR	25572082	25572205	.	+	.	Parent=Os03t0655500-00
Chr03	irgsp1_rep	mRNA	25576066	25582778	.	+	.	ID=Os03t0655600-01;Name=Os03t0655600-01;Locus_id=Os03g0655600;Note=MULE transposase%2C conserved domain domain containing protein.;Transcript_evidence=AK120778 (DDBJ%2C Best hit);ORF_evidence=Q7Y091 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=FAR1 DNA binding domain (IPR004330),Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);NIAS_FLcDNA=J023009J07;Expression=AK120778;TENOR=Os03t0655600-01;KEGG=Os03t0655600-01
Chr03	irgsp1_rep	five_prime_UTR	25576066	25576474	.	+	.	Parent=Os03t0655600-01
Chr03	irgsp1_rep	CDS	25576475	25579054	.	+	0	Parent=Os03t0655600-01
Chr03	irgsp1_rep	CDS	25581417	25581552	.	+	0	Parent=Os03t0655600-01
Chr03	irgsp1_rep	CDS	25581792	25582276	.	+	2	Parent=Os03t0655600-01
Chr03	irgsp1_rep	three_prime_UTR	25582277	25582778	.	+	.	Parent=Os03t0655600-01
Chr03	irgsp1_rep	mRNA	25576205	25582540	.	+	.	ID=Os03t0655600-02;Name=Os03t0655600-02;Locus_id=Os03g0655600;Note=MULE transposase%2C conserved domain domain containing protein.;Transcript_evidence=AK120058 (DDBJ%2C Best hit);ORF_evidence=Q7Y091 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=FAR1 DNA binding domain (IPR004330),Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);NIAS_FLcDNA=J013001C08;Expression=AK120058;TENOR=Os03t0655600-02;KEGG=Os03t0655600-02
Chr03	irgsp1_rep	five_prime_UTR	25576205	25576474	.	+	.	Parent=Os03t0655600-02
Chr03	irgsp1_rep	CDS	25576475	25579054	.	+	0	Parent=Os03t0655600-02
Chr03	irgsp1_rep	CDS	25581417	25581552	.	+	0	Parent=Os03t0655600-02
Chr03	irgsp1_rep	CDS	25581792	25582276	.	+	2	Parent=Os03t0655600-02
Chr03	irgsp1_rep	three_prime_UTR	25582277	25582540	.	+	.	Parent=Os03t0655600-02
Chr03	irgsp1_rep	mRNA	25578675	25582714	.	+	.	ID=Os03t0655600-03;Name=Os03t0655600-03;Locus_id=Os03g0655600;Note=Hypothetical conserved gene.;Transcript_evidence=AK073458 (DDBJ%2C Best hit);ORF_evidence=Q7Y091 (UniProt);NIAS_FLcDNA=J033042J10;Expression=AK073458;TENOR=Os03t0655600-03;KEGG=Os03t0655600-03
Chr03	irgsp1_rep	five_prime_UTR	25578675	25578676	.	+	.	Parent=Os03t0655600-03
Chr03	irgsp1_rep	CDS	25578677	25579054	.	+	0	Parent=Os03t0655600-03
Chr03	irgsp1_rep	CDS	25581417	25581552	.	+	0	Parent=Os03t0655600-03
Chr03	irgsp1_rep	CDS	25581792	25582276	.	+	2	Parent=Os03t0655600-03
Chr03	irgsp1_rep	three_prime_UTR	25582277	25582714	.	+	.	Parent=Os03t0655600-03
Chr03	irgsp1_rep	mRNA	25586373	25590653	.	+	.	ID=Os03t0655700-01;Name=Os03t0655700-01;Locus_id=Os03g0655700;Note=Similar to 3-isopropylmalate dehydrogenase 2.;Transcript_evidence=AK120254 (DDBJ%2C Best hit);ORF_evidence=NP_001149749.1 (RefSeq);GO=Biological Process: leucine biosynthetic process (GO:0009098),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: cytoplasm (GO:0005737),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: 3-isopropylmalate dehydrogenase activity (GO:0003862),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: NAD binding (GO:0051287);InterPro=Isocitrate/isopropylmalate dehydrogenase (IPR001804),Isopropylmalate dehydrogenase (IPR004429),Isocitrate/isopropylmalate dehydrogenase%2C conserved site (IPR019818),Isopropylmalate dehydrogenase-like domain (IPR024084);NIAS_FLcDNA=J013045L02;TENOR=Os03t0655700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	25586373	25586373	.	+	.	Parent=Os03t0655700-01
Chr03	irgsp1_rep	CDS	25586374	25586585	.	+	0	Parent=Os03t0655700-01
Chr03	irgsp1_rep	CDS	25586695	25586826	.	+	1	Parent=Os03t0655700-01
Chr03	irgsp1_rep	CDS	25586952	25587063	.	+	1	Parent=Os03t0655700-01
Chr03	irgsp1_rep	CDS	25588034	25588109	.	+	0	Parent=Os03t0655700-01
Chr03	irgsp1_rep	CDS	25588208	25588296	.	+	2	Parent=Os03t0655700-01
Chr03	irgsp1_rep	CDS	25588583	25588669	.	+	0	Parent=Os03t0655700-01
Chr03	irgsp1_rep	CDS	25588984	25589100	.	+	0	Parent=Os03t0655700-01
Chr03	irgsp1_rep	CDS	25589182	25589289	.	+	0	Parent=Os03t0655700-01
Chr03	irgsp1_rep	CDS	25589388	25589441	.	+	0	Parent=Os03t0655700-01
Chr03	irgsp1_rep	CDS	25589546	25589698	.	+	0	Parent=Os03t0655700-01
Chr03	irgsp1_rep	CDS	25590255	25590335	.	+	0	Parent=Os03t0655700-01
Chr03	irgsp1_rep	three_prime_UTR	25590336	25590653	.	+	.	Parent=Os03t0655700-01
Chr03	irgsp1_rep	mRNA	25588584	25590574	.	+	.	ID=Os03t0655700-02;Name=Os03t0655700-02;Locus_id=Os03g0655700;Note=Similar to 3-isopropylmalate dehydrogenase.;Transcript_evidence=AK066745 (DDBJ%2C Best hit);ORF_evidence=NP_001149749.1 (RefSeq);GO=Biological Process: leucine biosynthetic process (GO:0009098),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: cytoplasm (GO:0005737),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: 3-isopropylmalate dehydrogenase activity (GO:0003862),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: NAD binding (GO:0051287);InterPro=Isocitrate/isopropylmalate dehydrogenase (IPR001804),Isopropylmalate dehydrogenase (IPR004429),Isocitrate/isopropylmalate dehydrogenase%2C conserved site (IPR019818),Isopropylmalate dehydrogenase-like domain (IPR024084);NIAS_FLcDNA=J013084N20;Expression=AK066745;TENOR=Os03t0655700-02;KEGG=Os03t0655700-02 (EC:1.1.1.85)
Chr03	irgsp1_rep	five_prime_UTR	25588584	25588585	.	+	.	Parent=Os03t0655700-02
Chr03	irgsp1_rep	CDS	25588586	25588669	.	+	0	Parent=Os03t0655700-02
Chr03	irgsp1_rep	CDS	25588984	25589100	.	+	0	Parent=Os03t0655700-02
Chr03	irgsp1_rep	CDS	25589182	25589289	.	+	0	Parent=Os03t0655700-02
Chr03	irgsp1_rep	CDS	25589388	25589441	.	+	0	Parent=Os03t0655700-02
Chr03	irgsp1_rep	CDS	25589546	25589698	.	+	0	Parent=Os03t0655700-02
Chr03	irgsp1_rep	CDS	25590255	25590335	.	+	0	Parent=Os03t0655700-02
Chr03	irgsp1_rep	three_prime_UTR	25590336	25590574	.	+	.	Parent=Os03t0655700-02
Chr03	irgsp1_rep	mRNA	25586377	25590380	.	-	.	ID=Os03t0655850-00;Name=Os03t0655850-00;Locus_id=Os03g0655850;Note=Hypothetical gene.;Transcript_evidence=BT016862 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0655850-00;KEGG=Os03t0655850-00
Chr03	irgsp1_rep	five_prime_UTR	25590252	25590380	.	-	.	Parent=Os03t0655850-00
Chr03	irgsp1_rep	five_prime_UTR	25589558	25589690	.	-	.	Parent=Os03t0655850-00
Chr03	irgsp1_rep	five_prime_UTR	25589387	25589452	.	-	.	Parent=Os03t0655850-00
Chr03	irgsp1_rep	five_prime_UTR	25589188	25589288	.	-	.	Parent=Os03t0655850-00
Chr03	irgsp1_rep	five_prime_UTR	25589055	25589108	.	-	.	Parent=Os03t0655850-00
Chr03	irgsp1_rep	CDS	25588976	25589054	.	-	0	Parent=Os03t0655850-00
Chr03	irgsp1_rep	CDS	25588597	25588661	.	-	2	Parent=Os03t0655850-00
Chr03	irgsp1_rep	CDS	25588195	25588307	.	-	0	Parent=Os03t0655850-00
Chr03	irgsp1_rep	CDS	25588051	25588099	.	-	1	Parent=Os03t0655850-00
Chr03	irgsp1_rep	CDS	25587060	25587080	.	-	0	Parent=Os03t0655850-00
Chr03	irgsp1_rep	three_prime_UTR	25586935	25587059	.	-	.	Parent=Os03t0655850-00
Chr03	irgsp1_rep	three_prime_UTR	25586695	25586809	.	-	.	Parent=Os03t0655850-00
Chr03	irgsp1_rep	three_prime_UTR	25586377	25586580	.	-	.	Parent=Os03t0655850-00
Chr03	irgsp1_rep	mRNA	25592632	25594157	.	-	.	ID=Os03t0656000-00;Name=Os03t0656000-00;Locus_id=Os03g0656000;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001173570.1 (RefSeq);InterPro=Heat shock protein Hsp20 (IPR002068),HSP20-like chaperone (IPR008978);TENOR=Os03t0656000-00;KEGG=Os03t0656000-00
Chr03	irgsp1_rep	CDS	25594028	25594157	.	-	0	Parent=Os03t0656000-00
Chr03	irgsp1_rep	CDS	25593296	25593833	.	-	2	Parent=Os03t0656000-00
Chr03	irgsp1_rep	CDS	25592632	25592842	.	-	1	Parent=Os03t0656000-00
Chr03	irgsp1_rep	mRNA	25593570	25594160	.	+	.	ID=Os03t0656051-00;Name=Os03t0656051-00;Locus_id=Os03g0656051;Note=Hypothetical conserved gene.;Transcript_evidence=EU974920 (DDBJ);ORF_evidence=NP_001145365.1 (RefSeq);TENOR=Os03t0656051-00;KEGG=Os03t0656051-00
Chr03	irgsp1_rep	five_prime_UTR	25593570	25593679	.	+	.	Parent=Os03t0656051-00
Chr03	irgsp1_rep	CDS	25593680	25593859	.	+	0	Parent=Os03t0656051-00
Chr03	irgsp1_rep	three_prime_UTR	25593860	25594160	.	+	.	Parent=Os03t0656051-00
Chr03	irgsp1_rep	mRNA	25595522	25596430	.	-	.	ID=Os03t0656075-00;Name=Os03t0656075-00;Locus_id=Os03g0656075;Note=Conserved hypothetical protein.;Transcript_evidence=EU945494 (DDBJ);ORF_evidence=B8BJI3 (UniProt);TENOR=Os03t0656075-00
Chr03	irgsp1_rep	CDS	25595777	25596430	.	-	0	Parent=Os03t0656075-00
Chr03	irgsp1_rep	three_prime_UTR	25595522	25595776	.	-	.	Parent=Os03t0656075-00
Chr03	irgsp1_rep	mRNA	25599781	25600275	.	-	.	ID=Os03t0656100-01;Name=Os03t0656100-01;Locus_id=Os03g0656100;Note=Similar to Hsp20/alpha crystallin family protein%2C expressed.;Transcript_evidence=AK062338 (DDBJ%2C Best hit);ORF_evidence=Q10FT7 (UniProt);NIAS_FLcDNA=001-101-E09;TENOR=Os03t0656100-01
Chr03	irgsp1_rep	five_prime_UTR	25600275	25600275	.	-	.	Parent=Os03t0656100-01
Chr03	irgsp1_rep	CDS	25599781	25600274	.	-	0	Parent=Os03t0656100-01
Chr03	irgsp1_rep	mRNA	25601289	25603902	.	-	.	ID=Os03t0656201-01;Name=Os03t0656201-01;Locus_id=Os03g0656201;Note=Similar to chaperone protein dnaJ-related.;Transcript_evidence=AK240680 (DDBJ%2C Best hit);ORF_evidence=NP_197286.1 (RefSeq);GO=Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C cysteine-rich domain (IPR001305);NIAS_FLcDNA=J043001D23;TENOR=Os03t0656201-01;KEGG=Os03t0656201-01
Chr03	irgsp1_rep	five_prime_UTR	25603896	25603902	.	-	.	Parent=Os03t0656201-01
Chr03	irgsp1_rep	CDS	25603770	25603895	.	-	0	Parent=Os03t0656201-01
Chr03	irgsp1_rep	CDS	25601938	25602199	.	-	0	Parent=Os03t0656201-01
Chr03	irgsp1_rep	CDS	25601794	25601852	.	-	2	Parent=Os03t0656201-01
Chr03	irgsp1_rep	three_prime_UTR	25601289	25601793	.	-	.	Parent=Os03t0656201-01
Chr03	irgsp1_rep	mRNA	25613825	25616179	.	+	.	ID=Os03t0656500-01;Name=Os03t0656500-01;Locus_id=Os03g0656500;RAP-DB Gene Symbol Synonym(s)=OsCCX2;RAP-DB Gene Name Synonym(s)=cation/calcium (Ca) exchanger 2;CGSNL Gene Symbol=CDT1;CGSNL Gene Name=CADMIUM TOLERANT 1;Oryzabase Gene Symbol Synonym(s)=OsCDT1%2C OsCCX2%2C CCX2%2C OsNCX8%2C NCX8;Oryzabase Gene Name Synonym(s)=sativa DcCDT1 homologue 1%2C cation/Ca2+ exchanger 2%2C cadmium tolerance 1%2C Na+/Ca2+ Exchanger 8%2C Sodium/calcium exchanger 8;Note=Node-expressed Cd transporter%2C Putative cation/calcium (Ca) exchanger%2C Cd accumulation in the grain;Transcript_evidence=AK121052;ORF_evidence=Q7Y0B2;GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral component of membrane (GO:0016021);InterPro=Sodium/calcium exchanger membrane region (IPR004837);NIAS_FLcDNA=J023055H11;Manual Curation=May 1%2C 2018;Literature_PMID=29696032;Oryzabase=8298;Expression=AK121052;TENOR=Os03t0656500-01;KEGG=Os03t0656500-01;Subcellular location=plasma membrane (GO:0005886)
Chr03	irgsp1_rep	five_prime_UTR	25613825	25614180	.	+	.	Parent=Os03t0656500-01
Chr03	irgsp1_rep	CDS	25614181	25615908	.	+	0	Parent=Os03t0656500-01
Chr03	irgsp1_rep	three_prime_UTR	25615909	25616179	.	+	.	Parent=Os03t0656500-01
Chr03	irgsp1_rep	mRNA	25624207	25627074	.	+	.	ID=Os03t0656800-01;Name=Os03t0656800-01;Locus_id=Os03g0656800;Note=Similar to 3-glucanase.;Transcript_evidence=AK069506 (DDBJ%2C Best hit);ORF_evidence=NP_001147672.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J023019N22;Expression=AK069506;TENOR=Os03t0656800-01;KEGG=Os03t0656800-01
Chr03	irgsp1_rep	five_prime_UTR	25624207	25624289	.	+	.	Parent=Os03t0656800-01
Chr03	irgsp1_rep	CDS	25624290	25624630	.	+	0	Parent=Os03t0656800-01
Chr03	irgsp1_rep	CDS	25625689	25626826	.	+	1	Parent=Os03t0656800-01
Chr03	irgsp1_rep	three_prime_UTR	25626827	25627074	.	+	.	Parent=Os03t0656800-01
Chr03	irgsp1_rep	mRNA	25624210	25625379	.	+	.	ID=Os03t0656800-02;Name=Os03t0656800-02;Locus_id=Os03g0656800;Note=Similar to 3-glucanase.;Transcript_evidence=AK064190 (DDBJ%2C Best hit);ORF_evidence=Q8W0R0 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=002-104-C08;Expression=AK064190;TENOR=Os03t0656800-02;KEGG=Os03t0656800-02
Chr03	irgsp1_rep	five_prime_UTR	25624210	25624289	.	+	.	Parent=Os03t0656800-02
Chr03	irgsp1_rep	CDS	25624290	25624634	.	+	0	Parent=Os03t0656800-02
Chr03	irgsp1_rep	three_prime_UTR	25624635	25625379	.	+	.	Parent=Os03t0656800-02
Chr03	irgsp1_rep	mRNA	25625612	25626841	.	-	.	ID=Os03t0656850-00;Name=Os03t0656850-00;Locus_id=Os03g0656850;Note=Conserved hypothetical protein.;Transcript_evidence=BT019195 (DDBJ);ORF_evidence=C4J0K6 (UniProt);TENOR=Os03t0656850-00
Chr03	irgsp1_rep	CDS	25625612	25626841	.	-	0	Parent=Os03t0656850-00
Chr03	irgsp1_rep	mRNA	25627120	25631135	.	+	.	ID=Os03t0656900-01;Name=Os03t0656900-01;Locus_id=Os03g0656900;RAP-DB Gene Symbol Synonym(s)=NUS1%2C V1%2C V<sub>1</sub>;RAP-DB Gene Name Synonym(s)=VIRESCENT 1%2C nuclear undecaprenyl pyrophosphate synthase 1%2C virescent-1;CGSNL Gene Symbol=V1;CGSNL Gene Name=VIRESCENT 1;Oryzabase Gene Symbol Synonym(s)=v1%2C NUS1;Oryzabase Gene Name Synonym(s)=virescent1%2C virescent 1%2C virescent-1%2C nuclear undecaprenyl pyrophosphate synthase 1;Note=Plastid RNA-binding protein%2C Regulation of chloroplast RNA metabolism%2C Early chloroplast development under cold stress;Transcript_evidence=AK066416,AB550822 (Taichung 65);ORF_evidence=Q7Y092,G1UDG8 (Taichung 65);GO=Biological Process: DNA-templated transcription%2C termination (GO:0006353),Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: RNA binding (GO:0003723);InterPro=NusB antitermination factor (IPR011605),NusB/RsmB/TIM44 (IPR006027);NIAS_FLcDNA=J013067A14;Manual Curation=May 10%2C 2017;Literature_PMID=21981410;Oryzabase=9670;Expression=AK066416;TENOR=Os03t0656900-01;KEGG=Os03t0656900-01;Subcellular location=chloroplast (GO:0009507)
Chr03	irgsp1_rep	five_prime_UTR	25627120	25627228	.	+	.	Parent=Os03t0656900-01
Chr03	irgsp1_rep	CDS	25627229	25627506	.	+	0	Parent=Os03t0656900-01
Chr03	irgsp1_rep	CDS	25627596	25627672	.	+	1	Parent=Os03t0656900-01
Chr03	irgsp1_rep	CDS	25627835	25627969	.	+	2	Parent=Os03t0656900-01
Chr03	irgsp1_rep	CDS	25628666	25628720	.	+	2	Parent=Os03t0656900-01
Chr03	irgsp1_rep	CDS	25628846	25628933	.	+	1	Parent=Os03t0656900-01
Chr03	irgsp1_rep	CDS	25630190	25630288	.	+	0	Parent=Os03t0656900-01
Chr03	irgsp1_rep	CDS	25630377	25630508	.	+	0	Parent=Os03t0656900-01
Chr03	irgsp1_rep	three_prime_UTR	25630509	25631135	.	+	.	Parent=Os03t0656900-01
Chr03	irgsp1_rep	mRNA	25634617	25639033	.	+	.	ID=Os03t0657000-01;Name=Os03t0657000-01;Locus_id=Os03g0657000;Oryzabase Gene Symbol Synonym(s)=OsTBP2;Oryzabase Gene Name Synonym(s)=TATA binding protein 2;Note=TATA-binding protein TBP2.;Transcript_evidence=AK061103 (DDBJ%2C Best hit),AK099162 (DDBJ%2C Best hit);ORF_evidence=Q8W0W4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: transcription initiation from RNA polymerase II promoter (GO:0006367),Molecular Function: DNA binding (GO:0003677),Molecular Function: binding (GO:0005488);InterPro=TATA-box binding protein (IPR000814),Transcription factor TFIID%2C C-terminal/DNA glycosylase%2C N-terminal (IPR012294),Beta2-adaptin/TATA-box binding%2C C-terminal (IPR012295);NIAS_FLcDNA=006-207-B06,J023075I02;Oryzabase=13909;TENOR=Os03t0657000-01
Chr03	irgsp1_rep	five_prime_UTR	25634617	25634798	.	+	.	Parent=Os03t0657000-01
Chr03	irgsp1_rep	CDS	25634799	25634884	.	+	0	Parent=Os03t0657000-01
Chr03	irgsp1_rep	CDS	25635862	25635949	.	+	1	Parent=Os03t0657000-01
Chr03	irgsp1_rep	CDS	25636557	25636628	.	+	0	Parent=Os03t0657000-01
Chr03	irgsp1_rep	CDS	25637552	25637602	.	+	0	Parent=Os03t0657000-01
Chr03	irgsp1_rep	CDS	25637677	25637721	.	+	0	Parent=Os03t0657000-01
Chr03	irgsp1_rep	CDS	25637820	25637912	.	+	0	Parent=Os03t0657000-01
Chr03	irgsp1_rep	CDS	25637998	25638099	.	+	0	Parent=Os03t0657000-01
Chr03	irgsp1_rep	CDS	25638174	25638247	.	+	0	Parent=Os03t0657000-01
Chr03	irgsp1_rep	CDS	25638652	25638652	.	+	1	Parent=Os03t0657000-01
Chr03	irgsp1_rep	three_prime_UTR	25638653	25639033	.	+	.	Parent=Os03t0657000-01
Chr03	irgsp1_rep	mRNA	25639131	25642187	.	-	.	ID=Os03t0657100-01;Name=Os03t0657100-01;Locus_id=Os03g0657100;RAP-DB Gene Symbol Synonym(s)=OsPUB24;Oryzabase Gene Symbol Synonym(s)=OsPUB24%2C PUB24;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 24%2C U-box protein 24;Note=U-box E3 ubiquitin (Ub) ligase%2C Negative regulation of BR signaling;Transcript_evidence=AK120547;ORF_evidence=Q10FT0;GO=Biological Process: protein ubiquitination (GO:0016567),Molecular Function: ubiquitin-protein transferase activity (GO:0004842),Molecular Function: protein binding (GO:0005515);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Armadillo-type fold (IPR016024),Armadillo-like helical (IPR011989),U box domain (IPR003613),Armadillo (IPR000225);NIAS_FLcDNA=J013129M03;Manual Curation=May 10%2C 2019;Literature_PMID=30920691;Oryzabase=17816;Expression=AK120547;TENOR=Os03t0657100-01;KEGG=Os03t0657100-01;Subcellular location=cytosol (GO:0005829), nucleus (GO:0005634)
Chr03	irgsp1_rep	five_prime_UTR	25641943	25642187	.	-	.	Parent=Os03t0657100-01
Chr03	irgsp1_rep	CDS	25641409	25641942	.	-	0	Parent=Os03t0657100-01
Chr03	irgsp1_rep	CDS	25639384	25641324	.	-	0	Parent=Os03t0657100-01
Chr03	irgsp1_rep	three_prime_UTR	25639131	25639383	.	-	.	Parent=Os03t0657100-01
Chr03	irgsp1_rep	mRNA	25639109	25639862	.	-	.	ID=Os03t0657100-02;Name=Os03t0657100-02;Locus_id=Os03g0657100;Oryzabase Gene Symbol Synonym(s)=OsPUB24%2C PUB24;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 24%2C U-box protein 24;Note=Similar to predicted protein.;Transcript_evidence=AK066133 (DDBJ%2C Best hit);ORF_evidence=NP_564125.2 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013053G17;Oryzabase=17816;Expression=AK066133;TENOR=Os03t0657100-02;KEGG=Os03t0657100-02
Chr03	irgsp1_rep	five_prime_UTR	25639861	25639862	.	-	.	Parent=Os03t0657100-02
Chr03	irgsp1_rep	CDS	25639384	25639860	.	-	0	Parent=Os03t0657100-02
Chr03	irgsp1_rep	three_prime_UTR	25639109	25639383	.	-	.	Parent=Os03t0657100-02
Chr03	irgsp1_rep	mRNA	25651039	25651556	.	-	.	ID=Os03t0657400-00;Name=Os03t0657400-00;Locus_id=Os03g0657400;CGSNL Gene Symbol=WRKY60;CGSNL Gene Name=WRKY GENE 60;Oryzabase Gene Symbol Synonym(s)=OsWRKY60;Oryzabase Gene Name Synonym(s)=Rice WRKY gene60;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001050814.2 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6575;TENOR=Os03t0657400-00;KEGG=Os03t0657400-00
Chr03	irgsp1_rep	CDS	25651354	25651556	.	-	0	Parent=Os03t0657400-00
Chr03	irgsp1_rep	CDS	25651039	25651264	.	-	1	Parent=Os03t0657400-00
Chr03	irgsp1_rep	mRNA	25690409	25695115	.	-	.	ID=Os03t0658000-00;Name=Os03t0658000-00;Locus_id=Os03g0658000;Note=CytoChrome P450 domain containing protein.;Transcript_evidence=EU969052 (DDBJ);ORF_evidence=Q7Y098 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);TENOR=Os03t0658000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	25694820	25695115	.	-	0	Parent=Os03t0658000-00
Chr03	irgsp1_rep	CDS	25692332	25692654	.	-	1	Parent=Os03t0658000-00
Chr03	irgsp1_rep	CDS	25692067	25692179	.	-	2	Parent=Os03t0658000-00
Chr03	irgsp1_rep	three_prime_UTR	25692027	25692066	.	-	.	Parent=Os03t0658000-00
Chr03	irgsp1_rep	three_prime_UTR	25691701	25691958	.	-	.	Parent=Os03t0658000-00
Chr03	irgsp1_rep	three_prime_UTR	25691359	25691469	.	-	.	Parent=Os03t0658000-00
Chr03	irgsp1_rep	three_prime_UTR	25691161	25691219	.	-	.	Parent=Os03t0658000-00
Chr03	irgsp1_rep	three_prime_UTR	25690409	25690545	.	-	.	Parent=Os03t0658000-00
Chr03	irgsp1_rep	mRNA	25746127	25760738	.	-	.	ID=Os03t0658800-01;Name=Os03t0658800-01;Locus_id=Os03g0658800;CGSNL Gene Symbol=CYP87C2;CGSNL Gene Name=CYTOCHROME P450 87C2;Oryzabase Gene Symbol Synonym(s)=OsCYP87C2;Oryzabase Gene Name Synonym(s)=CytoChrome P450 87C2;Note=CytoChrome P450 family protein.;Transcript_evidence=AK065238 (DDBJ%2C Best hit);ORF_evidence=XP_002303566.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J013002I04;Oryzabase=21844;TENOR=Os03t0658800-01
Chr03	irgsp1_rep	five_prime_UTR	25760651	25760738	.	-	.	Parent=Os03t0658800-01
Chr03	irgsp1_rep	CDS	25760394	25760650	.	-	0	Parent=Os03t0658800-01
Chr03	irgsp1_rep	CDS	25748827	25749151	.	-	1	Parent=Os03t0658800-01
Chr03	irgsp1_rep	CDS	25748538	25748687	.	-	0	Parent=Os03t0658800-01
Chr03	irgsp1_rep	CDS	25747940	25748194	.	-	0	Parent=Os03t0658800-01
Chr03	irgsp1_rep	CDS	25747674	25747763	.	-	0	Parent=Os03t0658800-01
Chr03	irgsp1_rep	CDS	25747509	25747587	.	-	0	Parent=Os03t0658800-01
Chr03	irgsp1_rep	CDS	25747265	25747371	.	-	2	Parent=Os03t0658800-01
Chr03	irgsp1_rep	CDS	25746712	25746845	.	-	0	Parent=Os03t0658800-01
Chr03	irgsp1_rep	CDS	25746370	25746460	.	-	1	Parent=Os03t0658800-01
Chr03	irgsp1_rep	three_prime_UTR	25746127	25746369	.	-	.	Parent=Os03t0658800-01
Chr03	irgsp1_rep	mRNA	25759890	25760692	.	-	.	ID=Os03t0658800-02;Name=Os03t0658800-02;Locus_id=Os03g0658800;CGSNL Gene Symbol=CYP87C2;CGSNL Gene Name=CYTOCHROME P450 87C2;Oryzabase Gene Symbol Synonym(s)=OsCYP87C2;Oryzabase Gene Name Synonym(s)=CytoChrome P450 87C2;Note=Hypothetical conserved gene.;Transcript_evidence=AK063030 (DDBJ%2C Best hit);ORF_evidence=Q850S8 (UniProt);NIAS_FLcDNA=001-110-C04;Oryzabase=21844;Expression=AK063030;TENOR=Os03t0658800-02;KEGG=Os03t0658800-02
Chr03	irgsp1_rep	five_prime_UTR	25760651	25760692	.	-	.	Parent=Os03t0658800-02
Chr03	irgsp1_rep	CDS	25760390	25760650	.	-	0	Parent=Os03t0658800-02
Chr03	irgsp1_rep	three_prime_UTR	25759890	25760389	.	-	.	Parent=Os03t0658800-02
Chr03	irgsp1_rep	mRNA	25746145	25760690	.	-	.	ID=Os03t0658800-03;Name=Os03t0658800-03;Locus_id=Os03g0658800;CGSNL Gene Symbol=CYP87C2;CGSNL Gene Name=CYTOCHROME P450 87C2;Oryzabase Gene Symbol Synonym(s)=OsCYP87C2;Oryzabase Gene Name Synonym(s)=CytoChrome P450 87C2;Note=CytoChrome P450 family protein.;Transcript_evidence=AK104705 (DDBJ%2C Best hit);ORF_evidence=XP_002303566.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=001-037-D08;Oryzabase=21844;TENOR=Os03t0658800-03
Chr03	irgsp1_rep	five_prime_UTR	25760651	25760690	.	-	.	Parent=Os03t0658800-03
Chr03	irgsp1_rep	CDS	25760394	25760650	.	-	0	Parent=Os03t0658800-03
Chr03	irgsp1_rep	CDS	25748827	25749151	.	-	1	Parent=Os03t0658800-03
Chr03	irgsp1_rep	CDS	25748538	25748687	.	-	0	Parent=Os03t0658800-03
Chr03	irgsp1_rep	CDS	25747940	25748194	.	-	0	Parent=Os03t0658800-03
Chr03	irgsp1_rep	CDS	25747674	25747763	.	-	0	Parent=Os03t0658800-03
Chr03	irgsp1_rep	CDS	25747509	25747587	.	-	0	Parent=Os03t0658800-03
Chr03	irgsp1_rep	CDS	25747265	25747371	.	-	2	Parent=Os03t0658800-03
Chr03	irgsp1_rep	CDS	25746712	25746845	.	-	0	Parent=Os03t0658800-03
Chr03	irgsp1_rep	CDS	25746370	25746460	.	-	1	Parent=Os03t0658800-03
Chr03	irgsp1_rep	three_prime_UTR	25746145	25746369	.	-	.	Parent=Os03t0658800-03
Chr03	irgsp1_rep	mRNA	25800415	25801209	.	+	.	ID=Os03t0659200-01;Name=Os03t0659200-01;Locus_id=Os03g0659200;Oryzabase Gene Symbol Synonym(s)=OsFdC1%2C FdC1;Oryzabase Gene Name Synonym(s)=ferredoxin-like protein with C-terminal extension 1;Note=Similar to Ferredoxin.;Transcript_evidence=AK105700 (DDBJ%2C Best hit);ORF_evidence=NP_001151112.1 (RefSeq);GO=Biological Process: electron transport chain (GO:0022900),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: iron-sulfur cluster binding (GO:0051536),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=Ferredoxin (IPR001041),Ferredoxin [2Fe-2S]%2C plant (IPR010241),Beta-grasp fold%2C ferredoxin-type (IPR012675);NIAS_FLcDNA=001-201-D06;Oryzabase=19956;Expression=AK105700;TENOR=Os03t0659200-01;KEGG=Os03t0659200-01
Chr03	irgsp1_rep	five_prime_UTR	25800415	25800504	.	+	.	Parent=Os03t0659200-01
Chr03	irgsp1_rep	CDS	25800505	25800948	.	+	0	Parent=Os03t0659200-01
Chr03	irgsp1_rep	three_prime_UTR	25800949	25801209	.	+	.	Parent=Os03t0659200-01
Chr03	irgsp1_rep	mRNA	25800489	25801209	.	+	.	ID=Os03t0659200-02;Name=Os03t0659200-02;Locus_id=Os03g0659200;Oryzabase Gene Symbol Synonym(s)=OsFdC1%2C FdC1;Oryzabase Gene Name Synonym(s)=ferredoxin-like protein with C-terminal extension 1;Note=Similar to Ferredoxin.;Transcript_evidence=AK062598 (DDBJ%2C Best hit);ORF_evidence=NP_001151112.1 (RefSeq);GO=Biological Process: electron transport chain (GO:0022900),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: iron-sulfur cluster binding (GO:0051536),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=Ferredoxin (IPR001041),Ferredoxin [2Fe-2S]%2C plant (IPR010241),Beta-grasp fold%2C ferredoxin-type (IPR012675);NIAS_FLcDNA=001-102-F10;Oryzabase=19956;Expression=AK062598;TENOR=Os03t0659200-02;KEGG=Os03t0659200-02
Chr03	irgsp1_rep	five_prime_UTR	25800489	25800504	.	+	.	Parent=Os03t0659200-02
Chr03	irgsp1_rep	CDS	25800505	25800948	.	+	0	Parent=Os03t0659200-02
Chr03	irgsp1_rep	three_prime_UTR	25800949	25801209	.	+	.	Parent=Os03t0659200-02
Chr03	irgsp1_rep	mRNA	25800528	25801213	.	+	.	ID=Os03t0659200-03;Name=Os03t0659200-03;Locus_id=Os03g0659200;Oryzabase Gene Symbol Synonym(s)=OsFdC1%2C FdC1;Oryzabase Gene Name Synonym(s)=ferredoxin-like protein with C-terminal extension 1;Note=Similar to ferredoxin.;Transcript_evidence=AK066856 (DDBJ%2C Best hit);ORF_evidence=NP_001151112.1 (RefSeq);GO=Biological Process: electron transport chain (GO:0022900),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: iron-sulfur cluster binding (GO:0051536),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=Ferredoxin (IPR001041),Ferredoxin [2Fe-2S]%2C plant (IPR010241),Beta-grasp fold%2C ferredoxin-type (IPR012675);NIAS_FLcDNA=J013075B12;Oryzabase=19956;Expression=AK066856;TENOR=Os03t0659200-03;KEGG=Os03t0659200-03
Chr03	irgsp1_rep	five_prime_UTR	25800528	25800528	.	+	.	Parent=Os03t0659200-03
Chr03	irgsp1_rep	CDS	25800529	25800948	.	+	0	Parent=Os03t0659200-03
Chr03	irgsp1_rep	three_prime_UTR	25800949	25801213	.	+	.	Parent=Os03t0659200-03
Chr03	irgsp1_rep	mRNA	25801218	25801469	.	+	.	ID=Os03t0659233-00;Name=Os03t0659233-00;Locus_id=Os03g0659233;Oryzabase Gene Symbol Synonym(s)=PsbE%2C OsPsbE;Oryzabase Gene Name Synonym(s)=photosystem II (PSII) complex subunit PsbE;Note=CytoChrome b559 subunit alpha.;Transcript_evidence=P0C368 (UniProt);ORF_evidence=P0C368 (UniProt);GO=Biological Process: photosynthetic electron transport chain (GO:0009767),Biological Process: photosynthesis (GO:0015979),Biological Process: photosynthesis%2C light reaction (GO:0019684),Cellular Component: photosystem II (GO:0009523),Cellular Component: plastid (GO:0009536),Cellular Component: photosystem II reaction center (GO:0009539),Cellular Component: thylakoid (GO:0009579),Cellular Component: integral to membrane (GO:0016021),Cellular Component: plasma membrane-derived thylakoid photosystem II (GO:0030096),Molecular Function: heme binding (GO:0020037),Molecular Function: metal ion binding (GO:0046872);InterPro=Photosystem II cytoChrome b559%2C conserved site (IPR006216),Photosystem II cytoChrome b559%2C alpha subunit (IPR006217),Photosystem II cytoChrome b559%2C N-terminal (IPR013081),Photosystem II cytoChrome b559%2C alpha subunit%2C lumenal region (IPR013082);Oryzabase=23753;TENOR=Os03t0659233-00
Chr03	irgsp1_rep	CDS	25801218	25801469	.	+	0	Parent=Os03t0659233-00
Chr03	irgsp1_rep	mRNA	25801480	25801599	.	+	.	ID=Os03t0659266-00;Name=Os03t0659266-00;Locus_id=Os03g0659266;Note=CytoChrome b559 subunit beta.;Transcript_evidence=P0C399 (UniProt);ORF_evidence=P0C399 (UniProt);GO=Biological Process: photosynthetic electron transport chain (GO:0009767),Biological Process: photosynthesis (GO:0015979),Biological Process: photosynthesis%2C light reaction (GO:0019684),Cellular Component: photosystem II (GO:0009523),Cellular Component: plastid (GO:0009536),Cellular Component: photosystem II reaction center (GO:0009539),Cellular Component: thylakoid (GO:0009579),Cellular Component: integral to membrane (GO:0016021),Molecular Function: heme binding (GO:0020037),Molecular Function: metal ion binding (GO:0046872);InterPro=Photosystem II cytoChrome b559%2C conserved site (IPR006216),Photosystem II cytoChrome b559%2C beta subunit (IPR006241),Photosystem II cytoChrome b559%2C N-terminal (IPR013081);TENOR=Os03t0659266-00
Chr03	irgsp1_rep	CDS	25801480	25801599	.	+	0	Parent=Os03t0659266-00
Chr03	irgsp1_rep	mRNA	25801633	25804431	.	-	.	ID=Os03t0659300-01;Name=Os03t0659300-01;Locus_id=Os03g0659300;CGSNL Gene Symbol=GLYI4;CGSNL Gene Name=GLYOXALASE I-4;Oryzabase Gene Symbol Synonym(s)=OsGLYI4;Oryzabase Gene Name Synonym(s)=glyoxalase I-4;Note=Glyoxalase/bleomycin resistance protein/dioxygenase domain containing protein.;Transcript_evidence=AK241252 (DDBJ%2C Best hit);ORF_evidence=NP_001148888.1 (RefSeq);NIAS_FLcDNA=J065130F16;Oryzabase=9354;TENOR=Os03t0659300-01;KEGG=Os03t0659300-01
Chr03	irgsp1_rep	five_prime_UTR	25804417	25804431	.	-	.	Parent=Os03t0659300-01
Chr03	irgsp1_rep	CDS	25804035	25804416	.	-	0	Parent=Os03t0659300-01
Chr03	irgsp1_rep	CDS	25802102	25802145	.	-	2	Parent=Os03t0659300-01
Chr03	irgsp1_rep	three_prime_UTR	25802068	25802101	.	-	.	Parent=Os03t0659300-01
Chr03	irgsp1_rep	three_prime_UTR	25801633	25801798	.	-	.	Parent=Os03t0659300-01
Chr03	irgsp1_rep	mRNA	25804024	25804877	.	+	.	ID=Os03t0659350-01;Name=Os03t0659350-01;Locus_id=Os03g0659350;Note=Hypothetical gene.;Transcript_evidence=AK288422 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090032F09;TENOR=Os03t0659350-01;KEGG=Os03t0659350-01
Chr03	irgsp1_rep	CDS	25804024	25804461	.	+	0	Parent=Os03t0659350-01
Chr03	irgsp1_rep	three_prime_UTR	25804462	25804877	.	+	.	Parent=Os03t0659350-01
Chr03	irgsp1_rep	mRNA	25805348	25810838	.	-	.	ID=Os03t0659400-01;Name=Os03t0659400-01;Locus_id=Os03g0659400;Note=DWNN domain domain containing protein.;Transcript_evidence=AK111718 (DDBJ%2C Best hit);ORF_evidence=A2XK97 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C CCHC retroviral-type (IPR013084),DWNN domain (IPR014891);NIAS_FLcDNA=J023021J03;Expression=AK111718;TENOR=Os03t0659400-01;KEGG=Os03t0659400-01
Chr03	irgsp1_rep	five_prime_UTR	25810336	25810838	.	-	.	Parent=Os03t0659400-01
Chr03	irgsp1_rep	CDS	25810149	25810335	.	-	0	Parent=Os03t0659400-01
Chr03	irgsp1_rep	CDS	25808599	25808695	.	-	2	Parent=Os03t0659400-01
Chr03	irgsp1_rep	CDS	25808336	25808476	.	-	1	Parent=Os03t0659400-01
Chr03	irgsp1_rep	CDS	25808191	25808249	.	-	1	Parent=Os03t0659400-01
Chr03	irgsp1_rep	CDS	25807505	25807894	.	-	2	Parent=Os03t0659400-01
Chr03	irgsp1_rep	CDS	25806299	25807040	.	-	2	Parent=Os03t0659400-01
Chr03	irgsp1_rep	CDS	25805624	25806101	.	-	1	Parent=Os03t0659400-01
Chr03	irgsp1_rep	three_prime_UTR	25805348	25805623	.	-	.	Parent=Os03t0659400-01
Chr03	irgsp1_rep	mRNA	25805332	25806941	.	-	.	ID=Os03t0659400-02;Name=Os03t0659400-02;Locus_id=Os03g0659400;Note=Hypothetical conserved gene.;Transcript_evidence=AK111930 (DDBJ%2C Best hit);ORF_evidence=A2XK97 (UniProt);NIAS_FLcDNA=001-016-A06;Expression=AK111930;TENOR=Os03t0659400-02;KEGG=Os03t0659400-02
Chr03	irgsp1_rep	five_prime_UTR	25806940	25806941	.	-	.	Parent=Os03t0659400-02
Chr03	irgsp1_rep	CDS	25806299	25806939	.	-	0	Parent=Os03t0659400-02
Chr03	irgsp1_rep	CDS	25805624	25806101	.	-	1	Parent=Os03t0659400-02
Chr03	irgsp1_rep	three_prime_UTR	25805332	25805623	.	-	.	Parent=Os03t0659400-02
Chr03	irgsp1_rep	mRNA	25805372	25810848	.	+	.	ID=Os03t0659450-00;Name=Os03t0659450-00;Locus_id=Os03g0659450;Note=Hypothetical protein.;Transcript_evidence=tplb0028l15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0659450-00
Chr03	irgsp1_rep	five_prime_UTR	25805372	25806174	.	+	.	Parent=Os03t0659450-00
Chr03	irgsp1_rep	five_prime_UTR	25806264	25806910	.	+	.	Parent=Os03t0659450-00
Chr03	irgsp1_rep	CDS	25806911	25807026	.	+	0	Parent=Os03t0659450-00
Chr03	irgsp1_rep	CDS	25807494	25807701	.	+	1	Parent=Os03t0659450-00
Chr03	irgsp1_rep	three_prime_UTR	25807702	25807885	.	+	.	Parent=Os03t0659450-00
Chr03	irgsp1_rep	three_prime_UTR	25808185	25808242	.	+	.	Parent=Os03t0659450-00
Chr03	irgsp1_rep	three_prime_UTR	25808326	25808475	.	+	.	Parent=Os03t0659450-00
Chr03	irgsp1_rep	three_prime_UTR	25808598	25808689	.	+	.	Parent=Os03t0659450-00
Chr03	irgsp1_rep	three_prime_UTR	25810147	25810848	.	+	.	Parent=Os03t0659450-00
Chr03	irgsp1_rep	mRNA	25845328	25845980	.	+	.	ID=Os03t0659700-01;Name=Os03t0659700-01;Locus_id=Os03g0659700;Note=Similar to LOB domain protein 12.;Transcript_evidence=AK071550 (DDBJ%2C Best hit);ORF_evidence=NP_174417.1 (RefSeq);InterPro=Lateral organ boundaries%2C LOB (IPR004883);NIAS_FLcDNA=J023105E02;Expression=AK071550;TENOR=Os03t0659700-01;KEGG=Os03t0659700-01
Chr03	irgsp1_rep	five_prime_UTR	25845328	25845329	.	+	.	Parent=Os03t0659700-01
Chr03	irgsp1_rep	CDS	25845330	25845698	.	+	0	Parent=Os03t0659700-01
Chr03	irgsp1_rep	three_prime_UTR	25845699	25845980	.	+	.	Parent=Os03t0659700-01
Chr03	irgsp1_rep	mRNA	25846208	25847253	.	-	.	ID=Os03t0659800-01;Name=Os03t0659800-01;Locus_id=Os03g0659800;Note=Similar to H0525G02.7 protein.;Transcript_evidence=AK062366 (DDBJ%2C Best hit);ORF_evidence=Q00RR3 (UniProt);NIAS_FLcDNA=001-101-H10;TENOR=Os03t0659800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	25847251	25847253	.	-	.	Parent=Os03t0659800-01
Chr03	irgsp1_rep	CDS	25847073	25847250	.	-	0	Parent=Os03t0659800-01
Chr03	irgsp1_rep	CDS	25846947	25846992	.	-	2	Parent=Os03t0659800-01
Chr03	irgsp1_rep	CDS	25846784	25846862	.	-	1	Parent=Os03t0659800-01
Chr03	irgsp1_rep	CDS	25846601	25846693	.	-	0	Parent=Os03t0659800-01
Chr03	irgsp1_rep	three_prime_UTR	25846571	25846600	.	-	.	Parent=Os03t0659800-01
Chr03	irgsp1_rep	three_prime_UTR	25846208	25846469	.	-	.	Parent=Os03t0659800-01
Chr03	irgsp1_rep	mRNA	25850674	25858175	.	-	.	ID=Os03t0659900-01;Name=Os03t0659900-01;Locus_id=Os03g0659900;Note=Similar to S3 self-incompatibility locus-linked pollen 3.15 protein.;Transcript_evidence=AK067560 (DDBJ%2C Best hit);ORF_evidence=Q7XAE6 (UniProt);InterPro=Membralin (IPR019144);NIAS_FLcDNA=J013111H11;Expression=AK067560;TENOR=Os03t0659900-01;KEGG=Os03t0659900-01
Chr03	irgsp1_rep	five_prime_UTR	25857910	25858175	.	-	.	Parent=Os03t0659900-01
Chr03	irgsp1_rep	CDS	25857745	25857909	.	-	0	Parent=Os03t0659900-01
Chr03	irgsp1_rep	CDS	25856586	25856648	.	-	0	Parent=Os03t0659900-01
Chr03	irgsp1_rep	CDS	25855962	25856384	.	-	0	Parent=Os03t0659900-01
Chr03	irgsp1_rep	CDS	25855441	25855522	.	-	0	Parent=Os03t0659900-01
Chr03	irgsp1_rep	CDS	25855247	25855308	.	-	2	Parent=Os03t0659900-01
Chr03	irgsp1_rep	CDS	25854958	25855052	.	-	0	Parent=Os03t0659900-01
Chr03	irgsp1_rep	CDS	25853472	25853551	.	-	1	Parent=Os03t0659900-01
Chr03	irgsp1_rep	CDS	25853277	25853360	.	-	2	Parent=Os03t0659900-01
Chr03	irgsp1_rep	CDS	25852933	25853049	.	-	2	Parent=Os03t0659900-01
Chr03	irgsp1_rep	CDS	25852734	25852819	.	-	2	Parent=Os03t0659900-01
Chr03	irgsp1_rep	CDS	25852519	25852625	.	-	0	Parent=Os03t0659900-01
Chr03	irgsp1_rep	CDS	25852130	25852221	.	-	1	Parent=Os03t0659900-01
Chr03	irgsp1_rep	CDS	25851958	25852034	.	-	2	Parent=Os03t0659900-01
Chr03	irgsp1_rep	CDS	25851152	25851613	.	-	0	Parent=Os03t0659900-01
Chr03	irgsp1_rep	three_prime_UTR	25850674	25851151	.	-	.	Parent=Os03t0659900-01
Chr03	irgsp1_rep	mRNA	25850860	25856357	.	-	.	ID=Os03t0659900-02;Name=Os03t0659900-02;Locus_id=Os03g0659900;Note=Similar to S2 self-incompatibility locus-linked pollen 3.15 protein (Fragment).;Transcript_evidence=AK120170 (DDBJ%2C Best hit);ORF_evidence=Q7XAE4 (UniProt);InterPro=Membralin (IPR019144);NIAS_FLcDNA=J013032B10;TENOR=Os03t0659900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	25855962	25856357	.	-	0	Parent=Os03t0659900-02
Chr03	irgsp1_rep	CDS	25855441	25855522	.	-	0	Parent=Os03t0659900-02
Chr03	irgsp1_rep	CDS	25855247	25855308	.	-	2	Parent=Os03t0659900-02
Chr03	irgsp1_rep	CDS	25854958	25855052	.	-	0	Parent=Os03t0659900-02
Chr03	irgsp1_rep	CDS	25853472	25853551	.	-	1	Parent=Os03t0659900-02
Chr03	irgsp1_rep	CDS	25853277	25853360	.	-	2	Parent=Os03t0659900-02
Chr03	irgsp1_rep	CDS	25852933	25853049	.	-	2	Parent=Os03t0659900-02
Chr03	irgsp1_rep	CDS	25852734	25852819	.	-	2	Parent=Os03t0659900-02
Chr03	irgsp1_rep	CDS	25852519	25852625	.	-	0	Parent=Os03t0659900-02
Chr03	irgsp1_rep	CDS	25852130	25852221	.	-	1	Parent=Os03t0659900-02
Chr03	irgsp1_rep	CDS	25851958	25852034	.	-	2	Parent=Os03t0659900-02
Chr03	irgsp1_rep	CDS	25851152	25851613	.	-	0	Parent=Os03t0659900-02
Chr03	irgsp1_rep	three_prime_UTR	25850860	25851151	.	-	.	Parent=Os03t0659900-02
Chr03	irgsp1_rep	mRNA	25859710	25860366	.	-	.	ID=Os03t0660000-01;Name=Os03t0660000-01;Locus_id=Os03g0660000;Note=Conserved hypothetical protein.;Transcript_evidence=AK111052 (DDBJ%2C Best hit);ORF_evidence=B8ANL4 (UniProt);NIAS_FLcDNA=002-175-C09;Expression=AK111052;TENOR=Os03t0660000-01;KEGG=Os03t0660000-01
Chr03	irgsp1_rep	five_prime_UTR	25860115	25860366	.	-	.	Parent=Os03t0660000-01
Chr03	irgsp1_rep	CDS	25859788	25860114	.	-	0	Parent=Os03t0660000-01
Chr03	irgsp1_rep	three_prime_UTR	25859710	25859787	.	-	.	Parent=Os03t0660000-01
Chr03	irgsp1_rep	mRNA	25860421	25861030	.	-	.	ID=Os03t0660050-00;Name=Os03t0660050-00;Locus_id=Os03g0660050;Note=Non-protein coding transcript.;Transcript_evidence=CT835270 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os03t0660050-00
Chr03	irgsp1_rep	exon	25860421	25861030	.	-	.	Parent=Os03t0660050-00
Chr03	irgsp1_rep	mRNA	25884212	25884624	.	+	.	ID=Os03t0660300-00;Name=Os03t0660300-00;Locus_id=Os03g0660300;CGSNL Gene Symbol=SAUR15;CGSNL Gene Name=SMALL AUXIN-UP RNA 15;Oryzabase Gene Symbol Synonym(s)=OsSAUR15;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 15;Note=Auxin responsive SAUR protein domain containing protein.;Transcript_evidence=AK361840 (DDBJ);ORF_evidence=Q75GP8 (UniProt);InterPro=Auxin responsive SAUR protein (IPR003676);Oryzabase=9140;TENOR=Os03t0660300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	25884212	25884303	.	+	.	Parent=Os03t0660300-00
Chr03	irgsp1_rep	CDS	25884304	25884624	.	+	0	Parent=Os03t0660300-00
Chr03	irgsp1_rep	mRNA	25893155	25893521	.	+	.	ID=Os03t0660400-00;Name=Os03t0660400-00;Locus_id=Os03g0660400;CGSNL Gene Symbol=SAUR16;CGSNL Gene Name=SMALL AUXIN-UP RNA 16;Oryzabase Gene Symbol Synonym(s)=OsSAUR16;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 16;Note=Hypothetical conserved gene.;Transcript_evidence=AK361840 (DDBJ);ORF_evidence=A3AL27 (UniProt);InterPro=Auxin responsive SAUR protein (IPR003676);Oryzabase=9141;TENOR=Os03t0660400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	25893155	25893199	.	+	.	Parent=Os03t0660400-00
Chr03	irgsp1_rep	CDS	25893200	25893514	.	+	0	Parent=Os03t0660400-00
Chr03	irgsp1_rep	three_prime_UTR	25893515	25893521	.	+	.	Parent=Os03t0660400-00
Chr03	irgsp1_rep	mRNA	25898609	25899041	.	+	.	ID=Os03t0660500-00;Name=Os03t0660500-00;Locus_id=Os03g0660500;CGSNL Gene Symbol=SAUR17;CGSNL Gene Name=SMALL AUXIN-UP RNA 17;Oryzabase Gene Symbol Synonym(s)=OsSAUR17;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 17;Note=Auxin responsive SAUR protein domain containing protein.;Transcript_evidence=AK361840 (DDBJ);ORF_evidence=Q75GQ1 (UniProt);InterPro=Auxin responsive SAUR protein (IPR003676);Oryzabase=9142;TENOR=Os03t0660500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	25898609	25898705	.	+	.	Parent=Os03t0660500-00
Chr03	irgsp1_rep	CDS	25898706	25899026	.	+	0	Parent=Os03t0660500-00
Chr03	irgsp1_rep	three_prime_UTR	25899027	25899041	.	+	.	Parent=Os03t0660500-00
Chr03	irgsp1_rep	mRNA	25908352	25910162	.	-	.	ID=Os03t0660700-01;Name=Os03t0660700-01;Locus_id=Os03g0660700;Note=Conserved hypothetical protein.;Transcript_evidence=AK109543 (DDBJ%2C Best hit);ORF_evidence=B9FA57 (UniProt);NIAS_FLcDNA=002-120-C09;Expression=AK109543;TENOR=Os03t0660700-01;KEGG=Os03t0660700-01
Chr03	irgsp1_rep	five_prime_UTR	25909901	25910162	.	-	.	Parent=Os03t0660700-01
Chr03	irgsp1_rep	CDS	25909745	25909900	.	-	0	Parent=Os03t0660700-01
Chr03	irgsp1_rep	CDS	25908829	25909136	.	-	0	Parent=Os03t0660700-01
Chr03	irgsp1_rep	CDS	25908530	25908644	.	-	1	Parent=Os03t0660700-01
Chr03	irgsp1_rep	three_prime_UTR	25908352	25908529	.	-	.	Parent=Os03t0660700-01
Chr03	irgsp1_rep	mRNA	25943115	25945620	.	-	.	ID=Os03t0661250-00;Name=Os03t0661250-00;Locus_id=Os03g0661250;Note=Hypothetical protein.;Transcript_evidence=EU941142 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0661250-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	25945350	25945620	.	-	0	Parent=Os03t0661250-00
Chr03	irgsp1_rep	CDS	25943115	25943263	.	-	2	Parent=Os03t0661250-00
Chr03	irgsp1_rep	mRNA	25942767	25946686	.	+	.	ID=Os03t0661300-01;Name=Os03t0661300-01;Locus_id=Os03g0661300;RAP-DB Gene Symbol Synonym(s)=TUB8%2C OsTUB8%2C TUBB8;RAP-DB Gene Name Synonym(s)=BETA TUBULIN 8%2C beta tubulin 8%2C Tubulin beta-8 chain%2C Beta-8-tubulin;CGSNL Gene Symbol=TUB8;CGSNL Gene Name=BETA TUBULIN 8;Oryzabase Gene Symbol Synonym(s)=OsTUB8%2C TUBB8;Oryzabase Gene Name Synonym(s)=beta tubulin 8%2C Tubulin beta-8 chain%2C Beta-8-tubulin;Note=Beta-tubulin %2C Microtubules formation;Transcript_evidence=AB104733,AK121321;ORF_evidence=Q76FS2,Q10FN6;GO=Biological Process: microtubule-based process (GO:0007017),Biological Process: protein polymerization (GO:0051258),Molecular Function: GTPase activity (GO:0003924),Molecular Function: structural constituent of cytoskeleton (GO:0005200),Molecular Function: GTP binding (GO:0005525),Cellular Component: microtubule (GO:0005874),Cellular Component: protein complex (GO:0043234);InterPro=Tubulin (IPR000217),Beta tubulin (IPR002453),Tubulin/FtsZ%2C GTPase domain (IPR003008),Tubulin/FtsZ%2C C-terminal (IPR008280),Tubulin/FtsZ%2C 2-layer sandwich domain (IPR018316),Tubulin%2C C-terminal (IPR023123),Beta tubulin%2C autoregulation binding site (IPR013838),Tubulin%2C conserved site (IPR017975);NIAS_FLcDNA=J023114E06;Manual Curation=February 8%2C 2010;Literature_PMID=14634157;Oryzabase=2963;Expression=AK121321;TENOR=Os03t0661300-01;KEGG=Os03t0661300-01
Chr03	irgsp1_rep	five_prime_UTR	25942767	25942886	.	+	.	Parent=Os03t0661300-01
Chr03	irgsp1_rep	CDS	25942887	25943280	.	+	0	Parent=Os03t0661300-01
Chr03	irgsp1_rep	CDS	25945370	25945639	.	+	2	Parent=Os03t0661300-01
Chr03	irgsp1_rep	CDS	25945732	25946408	.	+	2	Parent=Os03t0661300-01
Chr03	irgsp1_rep	three_prime_UTR	25946409	25946686	.	+	.	Parent=Os03t0661300-01
Chr03	irgsp1_rep	mRNA	25960079	25961643	.	+	.	ID=Os03t0661500-01;Name=Os03t0661500-01;Locus_id=Os03g0661500;Oryzabase Gene Symbol Synonym(s)=OsSTA108;Note=Conserved hypothetical protein.;Transcript_evidence=AK100254 (DDBJ%2C Best hit);ORF_evidence=A2XKB1 (UniProt);NIAS_FLcDNA=J023061D21;Oryzabase=19399;Expression=AK100254;TENOR=Os03t0661500-01;KEGG=Os03t0661500-01
Chr03	irgsp1_rep	five_prime_UTR	25960079	25960210	.	+	.	Parent=Os03t0661500-01
Chr03	irgsp1_rep	CDS	25960211	25961494	.	+	0	Parent=Os03t0661500-01
Chr03	irgsp1_rep	three_prime_UTR	25961495	25961643	.	+	.	Parent=Os03t0661500-01
Chr03	irgsp1_rep	mRNA	25972352	25973470	.	-	.	ID=Os03t0661600-01;Name=Os03t0661600-01;Locus_id=Os03g0661600;Oryzabase Gene Symbol Synonym(s)=OsPR5%2C PR5;Oryzabase Gene Name Synonym(s)=pathogenesis-related gene 5%2C Pathogenesis-related protein class 5 gene%2C PATHOGENESIS-RELATED PROTEIN 5;Note=Similar to Alpha-amylase/trypsin inhibitor (Antifungal protein).;Transcript_evidence=AK058637 (DDBJ%2C Best hit);ORF_evidence=O04364 (UniProt);InterPro=Thaumatin%2C pathogenesis-related (IPR001938),Thaumatin%2C conserved site (IPR017949);NIAS_FLcDNA=001-018-D06;Oryzabase=19958;Expression=AK058637;TENOR=Os03t0661600-01;KEGG=Os03t0661600-01
Chr03	irgsp1_rep	five_prime_UTR	25973377	25973470	.	-	.	Parent=Os03t0661600-01
Chr03	irgsp1_rep	CDS	25972531	25973376	.	-	0	Parent=Os03t0661600-01
Chr03	irgsp1_rep	three_prime_UTR	25972352	25972530	.	-	.	Parent=Os03t0661600-01
Chr03	irgsp1_rep	mRNA	25977116	25977967	.	+	.	ID=Os03t0661700-01;Name=Os03t0661700-01;Locus_id=Os03g0661700;Note=Non-protein coding transcript.;Transcript_evidence=AK073701 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J033055F03;TENOR=Os03t0661700-01
Chr03	irgsp1_rep	exon	25977116	25977434	.	+	.	Parent=Os03t0661700-01
Chr03	irgsp1_rep	exon	25977545	25977967	.	+	.	Parent=Os03t0661700-01
Chr03	irgsp1_rep	mRNA	25978555	25990239	.	-	.	ID=Os03t0661800-01;Name=Os03t0661800-01;Locus_id=Os03g0661800;Note=PDZ/DHR/GLGF domain containing protein.;Transcript_evidence=AK069601 (DDBJ%2C Best hit);ORF_evidence=A3AL40 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein binding (GO:0005515);InterPro=PDZ/DHR/GLGF (IPR001478),Peptidase cysteine/serine%2C trypsin-like (IPR009003);NIAS_FLcDNA=J023024H16;Expression=AK069601;TENOR=Os03t0661800-01;KEGG=Os03t0661800-01
Chr03	irgsp1_rep	five_prime_UTR	25989975	25990239	.	-	.	Parent=Os03t0661800-01
Chr03	irgsp1_rep	CDS	25989119	25989974	.	-	0	Parent=Os03t0661800-01
Chr03	irgsp1_rep	CDS	25988417	25988542	.	-	2	Parent=Os03t0661800-01
Chr03	irgsp1_rep	CDS	25988185	25988333	.	-	2	Parent=Os03t0661800-01
Chr03	irgsp1_rep	CDS	25985541	25985810	.	-	0	Parent=Os03t0661800-01
Chr03	irgsp1_rep	CDS	25985323	25985453	.	-	0	Parent=Os03t0661800-01
Chr03	irgsp1_rep	CDS	25984544	25984661	.	-	1	Parent=Os03t0661800-01
Chr03	irgsp1_rep	CDS	25984361	25984450	.	-	0	Parent=Os03t0661800-01
Chr03	irgsp1_rep	three_prime_UTR	25984356	25984360	.	-	.	Parent=Os03t0661800-01
Chr03	irgsp1_rep	three_prime_UTR	25984140	25984217	.	-	.	Parent=Os03t0661800-01
Chr03	irgsp1_rep	three_prime_UTR	25978893	25978980	.	-	.	Parent=Os03t0661800-01
Chr03	irgsp1_rep	three_prime_UTR	25978555	25978804	.	-	.	Parent=Os03t0661800-01
Chr03	irgsp1_rep	mRNA	25992195	25994988	.	+	.	ID=Os03t0661900-01;Name=Os03t0661900-01;Locus_id=Os03g0661900;Oryzabase Gene Name Synonym(s)=Peptidase%2C trypsin-like serine and cysteine domain-containing protein;Note=Peptidase%2C trypsin-like serine and cysteine domain containing protein.;Transcript_evidence=AK072616 (DDBJ%2C Best hit);ORF_evidence=A3AL41 (UniProt);GO=Molecular Function: RNA binding (GO:0003723),Molecular Function: RNA helicase activity (GO:0003724),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524);InterPro=Peptidase S7%2C flavivirus helicase (NS3) (IPR001850),Peptidase cysteine/serine%2C trypsin-like (IPR009003);NIAS_FLcDNA=J023133P22;Oryzabase=22020;Expression=AK072616;TENOR=Os03t0661900-01;KEGG=Os03t0661900-01
Chr03	irgsp1_rep	five_prime_UTR	25992195	25992366	.	+	.	Parent=Os03t0661900-01
Chr03	irgsp1_rep	five_prime_UTR	25993590	25993590	.	+	.	Parent=Os03t0661900-01
Chr03	irgsp1_rep	CDS	25993591	25994454	.	+	0	Parent=Os03t0661900-01
Chr03	irgsp1_rep	three_prime_UTR	25994455	25994988	.	+	.	Parent=Os03t0661900-01
Chr03	irgsp1_rep	mRNA	25999703	26004567	.	+	.	ID=Os03t0662000-01;Name=Os03t0662000-01;Locus_id=Os03g0662000;Note=Similar to Dihydrolipoyl dehydrogenase%2C mitochondrial precursor (EC 1.8.1.4) (Glycine cleavage system L protein) (Dihydrolipoamide dehydrogenase).;Transcript_evidence=AK102561 (DDBJ%2C Best hit);ORF_evidence=P31023 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: dihydrolipoyl dehydrogenase activity (GO:0004148),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Pyridine nucleotide-disulphide oxidoreductase%2C NAD-binding domain (IPR001327),Dihydrolipoamide dehydrogenase (IPR006258);NIAS_FLcDNA=J033097I22;Expression=AK102561;TENOR=Os03t0662000-01;KEGG=Os03t0662000-01 (EC:1.8.1.4)
Chr03	irgsp1_rep	five_prime_UTR	25999703	26003878	.	+	.	Parent=Os03t0662000-01
Chr03	irgsp1_rep	CDS	26003879	26004127	.	+	0	Parent=Os03t0662000-01
Chr03	irgsp1_rep	three_prime_UTR	26004128	26004567	.	+	.	Parent=Os03t0662000-01
Chr03	irgsp1_rep	mRNA	26018813	26022901	.	+	.	ID=Os03t0663100-01;Name=Os03t0663100-01;Locus_id=Os03g0663100;Note=PDZ/DHR/GLGF domain containing protein.;Transcript_evidence=AK119396 (DDBJ%2C Best hit);ORF_evidence=B8ANM3 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein binding (GO:0005515);InterPro=PDZ/DHR/GLGF (IPR001478),Peptidase cysteine/serine%2C trypsin-like (IPR009003);NIAS_FLcDNA=001-132-D09;Expression=AK119396;TENOR=Os03t0663100-01;KEGG=Os03t0663100-01
Chr03	irgsp1_rep	five_prime_UTR	26018813	26018932	.	+	.	Parent=Os03t0663100-01
Chr03	irgsp1_rep	CDS	26018933	26019530	.	+	0	Parent=Os03t0663100-01
Chr03	irgsp1_rep	CDS	26019767	26019901	.	+	2	Parent=Os03t0663100-01
Chr03	irgsp1_rep	CDS	26019986	26020134	.	+	2	Parent=Os03t0663100-01
Chr03	irgsp1_rep	CDS	26020762	26021031	.	+	0	Parent=Os03t0663100-01
Chr03	irgsp1_rep	CDS	26021102	26021232	.	+	0	Parent=Os03t0663100-01
Chr03	irgsp1_rep	CDS	26021616	26021733	.	+	1	Parent=Os03t0663100-01
Chr03	irgsp1_rep	CDS	26021808	26021900	.	+	0	Parent=Os03t0663100-01
Chr03	irgsp1_rep	CDS	26022058	26022135	.	+	0	Parent=Os03t0663100-01
Chr03	irgsp1_rep	CDS	26022229	26022315	.	+	0	Parent=Os03t0663100-01
Chr03	irgsp1_rep	three_prime_UTR	26022316	26022316	.	+	.	Parent=Os03t0663100-01
Chr03	irgsp1_rep	three_prime_UTR	26022497	26022901	.	+	.	Parent=Os03t0663100-01
Chr03	irgsp1_rep	mRNA	26032958	26033800	.	-	.	ID=Os03t0663400-02;Name=Os03t0663400-02;Locus_id=Os03g0663400;Oryzabase Gene Symbol Synonym(s)=OsLP%2C PR-5%2C 14b;Oryzabase Gene Name Synonym(s)=osmotin protein%2C Osmotin%2C OsPR5-like;Note=Similar to Thaumatin-like protein.;Transcript_evidence=AK102970 (DDBJ%2C Best hit),AK102798 (DDBJ%2C Best hit),AK119160 (DDBJ%2C Best hit);ORF_evidence=Q40630 (UniProt);NIAS_FLcDNA=J033115J22,J033108D14,001-034-E02;Oryzabase=11246;Expression=AK102970;TENOR=Os03t0663400-02;KEGG=Os03t0663400-02
Chr03	irgsp1_rep	five_prime_UTR	26033756	26033800	.	-	.	Parent=Os03t0663400-02
Chr03	irgsp1_rep	CDS	26033087	26033755	.	-	0	Parent=Os03t0663400-02
Chr03	irgsp1_rep	three_prime_UTR	26032958	26033086	.	-	.	Parent=Os03t0663400-02
Chr03	irgsp1_rep	mRNA	26034426	26035297	.	-	.	ID=Os03t0663500-00;Name=Os03t0663500-00;Locus_id=Os03g0663500;Oryzabase Gene Symbol Synonym(s)=TLP%2C PR5;Oryzabase Gene Name Synonym(s)=Thaumatin-like protein;Note=Similar to Osmotin precursor.;Transcript_evidence=U77656 (DDBJ%2C Best hit);ORF_evidence=NP_001147526.1 (RefSeq);InterPro=Thaumatin%2C pathogenesis-related (IPR001938),Thaumatin%2C conserved site (IPR017949);Oryzabase=12546;Expression=U77656;TENOR=Os03t0663500-00;KEGG=Os03t0663500-00
Chr03	irgsp1_rep	five_prime_UTR	26035297	26035297	.	-	.	Parent=Os03t0663500-00
Chr03	irgsp1_rep	CDS	26034637	26035296	.	-	0	Parent=Os03t0663500-00
Chr03	irgsp1_rep	three_prime_UTR	26034426	26034636	.	-	.	Parent=Os03t0663500-00
Chr03	irgsp1_rep	mRNA	26034532	26035341	.	+	.	ID=Os03t0663600-00;Name=Os03t0663600-00;Locus_id=Os03g0663600;Note=Similar to Pathogenesis-related thaumatin-like protein.;Transcript_evidence=EU967040 (DDBJ);ORF_evidence=O04363 (UniProt);TENOR=Os03t0663600-00
Chr03	irgsp1_rep	CDS	26034532	26035341	.	+	0	Parent=Os03t0663600-00
Chr03	irgsp1_rep	mRNA	26064148	26068769	.	+	.	ID=Os03t0663700-01;Name=Os03t0663700-01;Locus_id=Os03g0663700;Note=Similar to Endonuclease/Exonuclease/phosphatase family protein%2C expressed.;Transcript_evidence=AK102165 (DDBJ%2C Best hit);ORF_evidence=Q10FM1 (UniProt);InterPro=Endonuclease/exonuclease/phosphatase (IPR005135);NIAS_FLcDNA=J033086H07;TENOR=Os03t0663700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	26064148	26065025	.	+	.	Parent=Os03t0663700-01
Chr03	irgsp1_rep	CDS	26065026	26065055	.	+	0	Parent=Os03t0663700-01
Chr03	irgsp1_rep	CDS	26065166	26065253	.	+	0	Parent=Os03t0663700-01
Chr03	irgsp1_rep	CDS	26065557	26065622	.	+	2	Parent=Os03t0663700-01
Chr03	irgsp1_rep	CDS	26065758	26065845	.	+	2	Parent=Os03t0663700-01
Chr03	irgsp1_rep	CDS	26065940	26066044	.	+	1	Parent=Os03t0663700-01
Chr03	irgsp1_rep	CDS	26066167	26066665	.	+	1	Parent=Os03t0663700-01
Chr03	irgsp1_rep	three_prime_UTR	26066666	26066961	.	+	.	Parent=Os03t0663700-01
Chr03	irgsp1_rep	three_prime_UTR	26067188	26067381	.	+	.	Parent=Os03t0663700-01
Chr03	irgsp1_rep	three_prime_UTR	26067492	26067600	.	+	.	Parent=Os03t0663700-01
Chr03	irgsp1_rep	three_prime_UTR	26067719	26067867	.	+	.	Parent=Os03t0663700-01
Chr03	irgsp1_rep	three_prime_UTR	26067965	26068216	.	+	.	Parent=Os03t0663700-01
Chr03	irgsp1_rep	three_prime_UTR	26068331	26068410	.	+	.	Parent=Os03t0663700-01
Chr03	irgsp1_rep	three_prime_UTR	26068574	26068608	.	+	.	Parent=Os03t0663700-01
Chr03	irgsp1_rep	three_prime_UTR	26068702	26068769	.	+	.	Parent=Os03t0663700-01
Chr03	irgsp1_rep	mRNA	26070770	26072916	.	+	.	ID=Os03t0663750-00;Name=Os03t0663750-00;Locus_id=Os03g0663750;Note=Hypothetical protein.;Transcript_evidence=tplb0024b15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0663750-00
Chr03	irgsp1_rep	five_prime_UTR	26070770	26070770	.	+	.	Parent=Os03t0663750-00
Chr03	irgsp1_rep	CDS	26070771	26071391	.	+	0	Parent=Os03t0663750-00
Chr03	irgsp1_rep	CDS	26071488	26071742	.	+	0	Parent=Os03t0663750-00
Chr03	irgsp1_rep	CDS	26071961	26072014	.	+	0	Parent=Os03t0663750-00
Chr03	irgsp1_rep	three_prime_UTR	26072015	26072291	.	+	.	Parent=Os03t0663750-00
Chr03	irgsp1_rep	three_prime_UTR	26072393	26072916	.	+	.	Parent=Os03t0663750-00
Chr03	irgsp1_rep	mRNA	26071820	26072928	.	-	.	ID=Os03t0663800-01;Name=Os03t0663800-01;Locus_id=Os03g0663800;Oryzabase Gene Symbol Synonym(s)=OsEnS-51;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 51;Note=Globulin 1 (Fragment).;Transcript_evidence=AK105347 (DDBJ%2C Best hit);ORF_evidence=Q10FL8 (UniProt);GO=Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710);NIAS_FLcDNA=001-119-A01;Oryzabase=18377;Expression=AK105347;TENOR=Os03t0663800-01;KEGG=Os03t0663800-01
Chr03	irgsp1_rep	five_prime_UTR	26072884	26072928	.	-	.	Parent=Os03t0663800-01
Chr03	irgsp1_rep	CDS	26072370	26072883	.	-	0	Parent=Os03t0663800-01
Chr03	irgsp1_rep	CDS	26072027	26072265	.	-	2	Parent=Os03t0663800-01
Chr03	irgsp1_rep	three_prime_UTR	26071820	26072026	.	-	.	Parent=Os03t0663800-01
Chr03	irgsp1_rep	mRNA	26073641	26076622	.	-	.	ID=Os03t0663900-01;Name=Os03t0663900-01;Locus_id=Os03g0663900;RAP-DB Gene Symbol Synonym(s)=EPAD1;RAP-DB Gene Name Synonym(s)=EXINE PATTERN DESIGNER 1;Oryzabase Gene Symbol Synonym(s)=AGP%2C OsAGP;Oryzabase Gene Name Synonym(s)=Arabinogalactan protein;Note=Non-specific lipid transfer protein%2C Control of primexine patterning%2C Pollen exine patterning;Transcript_evidence=Inferred from literature;ORF_evidence=Q10FL6;InterPro=Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily (IPR036312),Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain (IPR016140);Manual Curation=October 26%2C 2020;Literature_PMID=33093144;Oryzabase=23017;TENOR=Os03t0663900-00;KEGG=Os03t0663900-00;Subcellular location=plasma membrane (GO:0005886)
Chr03	irgsp1_rep	five_prime_UTR	26076523	26076622	.	-	.	Parent=Os03t0663900-01
Chr03	irgsp1_rep	CDS	26076162	26076522	.	-	0	Parent=Os03t0663900-01
Chr03	irgsp1_rep	CDS	26074361	26074432	.	-	2	Parent=Os03t0663900-01
Chr03	irgsp1_rep	CDS	26074019	26074272	.	-	2	Parent=Os03t0663900-01
Chr03	irgsp1_rep	three_prime_UTR	26073641	26074018	.	-	.	Parent=Os03t0663900-01
Chr03	irgsp1_rep	mRNA	26093843	26095355	.	+	.	ID=Os03t0664300-00;Name=Os03t0664300-00;Locus_id=Os03g0664300;Oryzabase Gene Symbol Synonym(s)=OsFbox161%2C Os_F0076;Oryzabase Gene Name Synonym(s)=F-box protein 161;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=tplb0015o19 (Wheat FLcDNA);ORF_evidence=Q75GY3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=16950;TENOR=Os03t0664300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	26093843	26094558	.	+	0	Parent=Os03t0664300-00
Chr03	irgsp1_rep	CDS	26094665	26095355	.	+	1	Parent=Os03t0664300-00
Chr03	irgsp1_rep	mRNA	26096042	26096834	.	+	.	ID=Os03t0664400-01;Name=Os03t0664400-01;Locus_id=Os03g0664400;Oryzabase Gene Symbol Synonym(s)=OsLTPG26;Oryzabase Gene Name Synonym(s)=GPI-anchored non-specific lipid transfer protein 26%2C type G nsLTP 26;Note=Similar to Protease inhibitor/seed storage/LTP family protein.;Transcript_evidence=AK058628 (DDBJ%2C Best hit);ORF_evidence=B6U491 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=001-018-C05;Oryzabase=13509;TENOR=Os03t0664400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	26096042	26096062	.	+	.	Parent=Os03t0664400-01
Chr03	irgsp1_rep	CDS	26096063	26096794	.	+	0	Parent=Os03t0664400-01
Chr03	irgsp1_rep	three_prime_UTR	26096795	26096834	.	+	.	Parent=Os03t0664400-01
Chr03	irgsp1_rep	mRNA	26096044	26096992	.	+	.	ID=Os03t0664400-02;Name=Os03t0664400-02;Locus_id=Os03g0664400;Oryzabase Gene Symbol Synonym(s)=OsLTPG26;Oryzabase Gene Name Synonym(s)=GPI-anchored non-specific lipid transfer protein 26%2C type G nsLTP 26;Note=Expressed protein (With alternative splicing).;Transcript_evidence=AK059831 (DDBJ%2C Best hit);ORF_evidence=B6U491 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=006-206-A08;Oryzabase=13509;Expression=AK059831;TENOR=Os03t0664400-02;KEGG=Os03t0664400-02
Chr03	irgsp1_rep	five_prime_UTR	26096044	26096062	.	+	.	Parent=Os03t0664400-02
Chr03	irgsp1_rep	CDS	26096063	26096453	.	+	0	Parent=Os03t0664400-02
Chr03	irgsp1_rep	CDS	26096547	26096794	.	+	2	Parent=Os03t0664400-02
Chr03	irgsp1_rep	three_prime_UTR	26096795	26096992	.	+	.	Parent=Os03t0664400-02
Chr03	irgsp1_rep	mRNA	26115036	26115854	.	+	.	ID=Os03t0664600-00;Name=Os03t0664600-00;Locus_id=Os03g0664600;Oryzabase Gene Symbol Synonym(s)=OsLLA2%2C OsLTPG27%2C LLA2%2C LTPG27;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein-like AGP 2%2C non-specific lipid transfer protein-like arabinogalactan protein 2%2C GPI-anchored non-specific lipid transfer protein 27%2C type G nsLTP 27;Note=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor domain containing protein.;Transcript_evidence=AK370248 (DDBJ);ORF_evidence=Q75GY8 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);Oryzabase=11329;TENOR=Os03t0664600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	26115036	26115402	.	+	0	Parent=Os03t0664600-00
Chr03	irgsp1_rep	CDS	26115499	26115851	.	+	2	Parent=Os03t0664600-00
Chr03	irgsp1_rep	three_prime_UTR	26115852	26115854	.	+	.	Parent=Os03t0664600-00
Chr03	irgsp1_rep	mRNA	26114970	26115966	.	-	.	ID=Os03t0664650-00;Name=Os03t0664650-00;Locus_id=Os03g0664650;Note=Hypothetical gene.;Transcript_evidence=CT835252 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os03t0664650-00;KEGG=Os03t0664650-00
Chr03	irgsp1_rep	five_prime_UTR	26115742	26115966	.	-	.	Parent=Os03t0664650-00
Chr03	irgsp1_rep	CDS	26115532	26115741	.	-	0	Parent=Os03t0664650-00
Chr03	irgsp1_rep	CDS	26115190	26115402	.	-	0	Parent=Os03t0664650-00
Chr03	irgsp1_rep	three_prime_UTR	26114970	26115189	.	-	.	Parent=Os03t0664650-00
Chr03	irgsp1_rep	mRNA	26117499	26119699	.	-	.	ID=Os03t0664700-01;Name=Os03t0664700-01;Locus_id=Os03g0664700;Note=RNA polymerase II accessory factor%2C Cdc73 domain containing protein.;Transcript_evidence=AK100794 (DDBJ%2C Best hit);ORF_evidence=B8ANM7 (UniProt);InterPro=RNA polymerase II accessory factor%2C Cdc73 (IPR007852);NIAS_FLcDNA=J023121E24;Expression=AK100794;TENOR=Os03t0664700-01;KEGG=Os03t0664700-01
Chr03	irgsp1_rep	five_prime_UTR	26119666	26119699	.	-	.	Parent=Os03t0664700-01
Chr03	irgsp1_rep	CDS	26118708	26119665	.	-	0	Parent=Os03t0664700-01
Chr03	irgsp1_rep	CDS	26117997	26118079	.	-	2	Parent=Os03t0664700-01
Chr03	irgsp1_rep	CDS	26117820	26117906	.	-	0	Parent=Os03t0664700-01
Chr03	irgsp1_rep	three_prime_UTR	26117499	26117819	.	-	.	Parent=Os03t0664700-01
Chr03	irgsp1_rep	mRNA	26119970	26120830	.	+	.	ID=Os03t0664800-01;Name=Os03t0664800-01;Locus_id=Os03g0664800;Note=Acyl-CoA N-acyltransferase domain containing protein.;Transcript_evidence=AK243094 (DDBJ%2C Best hit);ORF_evidence=NP_001150788.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: N-acetyltransferase activity (GO:0008080);InterPro=GCN5-related N-acetyltransferase (GNAT) domain (IPR000182),Acyl-CoA N-acyltransferase (IPR016181);NIAS_FLcDNA=J100023K20;TENOR=Os03t0664800-01;KEGG=Os03t0664800-01
Chr03	irgsp1_rep	five_prime_UTR	26119970	26119977	.	+	.	Parent=Os03t0664800-01
Chr03	irgsp1_rep	CDS	26119978	26120589	.	+	0	Parent=Os03t0664800-01
Chr03	irgsp1_rep	three_prime_UTR	26120590	26120830	.	+	.	Parent=Os03t0664800-01
Chr03	irgsp1_rep	mRNA	26124192	26125082	.	-	.	ID=Os03t0664901-00;Name=Os03t0664901-00;Locus_id=Os03g0664901;Note=Hypothetical protein.;Transcript_evidence=EU957022 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0664901-00
Chr03	irgsp1_rep	five_prime_UTR	26124965	26125082	.	-	.	Parent=Os03t0664901-00
Chr03	irgsp1_rep	CDS	26124704	26124964	.	-	0	Parent=Os03t0664901-00
Chr03	irgsp1_rep	three_prime_UTR	26124192	26124703	.	-	.	Parent=Os03t0664901-00
Chr03	irgsp1_rep	mRNA	26147658	26148618	.	+	.	ID=Os03t0665000-00;Name=Os03t0665000-00;Locus_id=Os03g0665000;Note=GCN5-related N-acetyltransferase (GNAT) domain domain containing protein.;Transcript_evidence=EU969219 (DDBJ);ORF_evidence=NP_001050840.2 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: N-acetyltransferase activity (GO:0008080);InterPro=GCN5-related N-acetyltransferase (GNAT) domain (IPR000182),Acyl-CoA N-acyltransferase (IPR016181);TENOR=Os03t0665000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	26147658	26147673	.	+	.	Parent=Os03t0665000-00
Chr03	irgsp1_rep	CDS	26147674	26148054	.	+	0	Parent=Os03t0665000-00
Chr03	irgsp1_rep	CDS	26148355	26148618	.	+	0	Parent=Os03t0665000-00
Chr03	irgsp1_rep	mRNA	26152222	26155155	.	-	.	ID=Os03t0665200-01;Name=Os03t0665200-01;Locus_id=Os03g0665200;Note=Protein of unknown function DUF581 family protein.;Transcript_evidence=AK066202 (DDBJ%2C Best hit);ORF_evidence=B8ANM9 (UniProt);InterPro=Protein of unknown function DUF581 (IPR007650);NIAS_FLcDNA=J013056K06;Expression=AK066202;TENOR=Os03t0665200-01;KEGG=Os03t0665200-01
Chr03	irgsp1_rep	five_prime_UTR	26155064	26155155	.	-	.	Parent=Os03t0665200-01
Chr03	irgsp1_rep	five_prime_UTR	26154918	26154935	.	-	.	Parent=Os03t0665200-01
Chr03	irgsp1_rep	CDS	26154088	26154917	.	-	0	Parent=Os03t0665200-01
Chr03	irgsp1_rep	CDS	26152510	26152588	.	-	1	Parent=Os03t0665200-01
Chr03	irgsp1_rep	three_prime_UTR	26152222	26152509	.	-	.	Parent=Os03t0665200-01
Chr03	irgsp1_rep	mRNA	26190016	26190583	.	+	.	ID=Os03t0665700-00;Name=Os03t0665700-00;Locus_id=Os03g0665700;Note=Similar to predicted protein.;Transcript_evidence=DQ245183 (DDBJ);ORF_evidence=NP_001050842.2 (RefSeq);InterPro=Protein of unknown function DUF1677%2C plant (IPR012876);TENOR=Os03t0665700-00;KEGG=Os03t0665700-00
Chr03	irgsp1_rep	five_prime_UTR	26190016	26190078	.	+	.	Parent=Os03t0665700-00
Chr03	irgsp1_rep	CDS	26190079	26190435	.	+	0	Parent=Os03t0665700-00
Chr03	irgsp1_rep	three_prime_UTR	26190436	26190583	.	+	.	Parent=Os03t0665700-00
Chr03	irgsp1_rep	mRNA	26193742	26194693	.	-	.	ID=Os03t0665751-00;Name=Os03t0665751-00;Locus_id=Os03g0665751;Note=Hypothetical gene.;Transcript_evidence=BT086957 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0665751-00
Chr03	irgsp1_rep	five_prime_UTR	26194554	26194693	.	-	.	Parent=Os03t0665751-00
Chr03	irgsp1_rep	CDS	26194390	26194553	.	-	0	Parent=Os03t0665751-00
Chr03	irgsp1_rep	CDS	26193742	26193804	.	-	1	Parent=Os03t0665751-00
Chr03	irgsp1_rep	mRNA	26193470	26196512	.	+	.	ID=Os03t0665800-01;Name=Os03t0665800-01;Locus_id=Os03g0665800;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=AK107693 (DDBJ%2C Best hit);ORF_evidence=NP_191180.2 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989);NIAS_FLcDNA=002-132-C02;Expression=AK107693;TENOR=Os03t0665800-01;KEGG=Os03t0665800-01
Chr03	irgsp1_rep	CDS	26193470	26193625	.	+	0	Parent=Os03t0665800-01
Chr03	irgsp1_rep	CDS	26193743	26193818	.	+	0	Parent=Os03t0665800-01
Chr03	irgsp1_rep	CDS	26194405	26194512	.	+	2	Parent=Os03t0665800-01
Chr03	irgsp1_rep	CDS	26194641	26194739	.	+	2	Parent=Os03t0665800-01
Chr03	irgsp1_rep	CDS	26195220	26195345	.	+	2	Parent=Os03t0665800-01
Chr03	irgsp1_rep	CDS	26196112	26196245	.	+	2	Parent=Os03t0665800-01
Chr03	irgsp1_rep	three_prime_UTR	26196246	26196512	.	+	.	Parent=Os03t0665800-01
Chr03	irgsp1_rep	mRNA	26200938	26201928	.	+	.	ID=Os03t0665950-01;Name=Os03t0665950-01;Locus_id=Os03g0665950;Note=Conserved hypothetical protein.;Transcript_evidence=AK241231 (DDBJ%2C Best hit);ORF_evidence=NP_001173576.1 (RefSeq);NIAS_FLcDNA=J065127I11;TENOR=Os03t0665950-01;KEGG=Os03t0665950-01
Chr03	irgsp1_rep	five_prime_UTR	26200938	26201097	.	+	.	Parent=Os03t0665950-01
Chr03	irgsp1_rep	CDS	26201098	26201853	.	+	0	Parent=Os03t0665950-01
Chr03	irgsp1_rep	three_prime_UTR	26201854	26201928	.	+	.	Parent=Os03t0665950-01
Chr03	irgsp1_rep	mRNA	26202267	26207681	.	+	.	ID=Os03t0666100-00;Name=Os03t0666100-00;Locus_id=Os03g0666100;CGSNL Gene Symbol=CRL4;CGSNL Gene Name=CROWN ROOTLESS 4;Oryzabase Gene Symbol Synonym(s)=OsGNOM1%2C GNOM1%2C CRL4/GNOM1%2C CRL2/CRL3;Oryzabase Gene Name Synonym(s)=crown rootless4;Note=Similar to GN (GNOM)%3B GTP:GDP antiporter/ protein homodimerization.;Transcript_evidence=AF262214 (DDBJ%2C Best hit);ORF_evidence=NP_172851.1 (RefSeq);GO=Biological Process: regulation of ARF protein signal transduction (GO:0032012),Cellular Component: intracellular (GO:0005622),Molecular Function: ARF guanyl-nucleotide exchange factor activity (GO:0005086);InterPro=SEC7-like (IPR000904),SEC7-like%2C alpha orthogonal bundle (IPR023394);Oryzabase=8904;TENOR=Os03t0666100-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	26202267	26203829	.	+	.	Parent=Os03t0666100-00
Chr03	irgsp1_rep	CDS	26203830	26207465	.	+	0	Parent=Os03t0666100-00
Chr03	irgsp1_rep	three_prime_UTR	26207466	26207681	.	+	.	Parent=Os03t0666100-00
Chr03	irgsp1_rep	mRNA	26207742	26211666	.	-	.	ID=Os03t0666200-01;Name=Os03t0666200-01;Locus_id=Os03g0666200;RAP-DB Gene Symbol Synonym(s)=OsSWAP70A;Oryzabase Gene Symbol Synonym(s)=OsSWAP70A%2C SWAP70A;Note=Rac/Rop guanine nucleotide exchange factor%2C Regulation of immune responses;Transcript_evidence=AK102364;ORF_evidence=Q75H96;InterPro=Pleckstrin homology-like domain (IPR011993),Pleckstrin homology domain (IPR001849);NIAS_FLcDNA=J033091J20;Manual Curation=March 10%2C 2015;Literature_PMID=22142166;Oryzabase=10197;Expression=AK102364;TENOR=Os03t0666200-01;KEGG=Os03t0666200-01
Chr03	irgsp1_rep	five_prime_UTR	26211553	26211666	.	-	.	Parent=Os03t0666200-01
Chr03	irgsp1_rep	CDS	26211529	26211552	.	-	0	Parent=Os03t0666200-01
Chr03	irgsp1_rep	CDS	26211334	26211438	.	-	0	Parent=Os03t0666200-01
Chr03	irgsp1_rep	CDS	26210633	26210694	.	-	0	Parent=Os03t0666200-01
Chr03	irgsp1_rep	CDS	26210463	26210546	.	-	1	Parent=Os03t0666200-01
Chr03	irgsp1_rep	CDS	26210351	26210382	.	-	1	Parent=Os03t0666200-01
Chr03	irgsp1_rep	CDS	26210191	26210272	.	-	2	Parent=Os03t0666200-01
Chr03	irgsp1_rep	CDS	26209737	26209968	.	-	1	Parent=Os03t0666200-01
Chr03	irgsp1_rep	CDS	26208884	26209111	.	-	0	Parent=Os03t0666200-01
Chr03	irgsp1_rep	CDS	26208515	26208807	.	-	0	Parent=Os03t0666200-01
Chr03	irgsp1_rep	CDS	26208027	26208387	.	-	1	Parent=Os03t0666200-01
Chr03	irgsp1_rep	three_prime_UTR	26207742	26208026	.	-	.	Parent=Os03t0666200-01
Chr03	irgsp1_rep	mRNA	26216771	26218206	.	+	.	ID=Os03t0666300-00;Name=Os03t0666300-00;Locus_id=Os03g0666300;CGSNL Gene Symbol=MSL17;CGSNL Gene Name=MYB/SANT-LIKE 17;Oryzabase Gene Symbol Synonym(s)=OsMSL17;Oryzabase Gene Name Synonym(s)=Myb/SANT-LIKE 17;Note=Hypothetical conserved gene.;Transcript_evidence=BT083602 (DDBJ);ORF_evidence=Q75H97 (UniProt);InterPro=MYB-like (IPR017877);Oryzabase=22957;TENOR=Os03t0666300-00;KEGG=Os03t0666300-00
Chr03	irgsp1_rep	five_prime_UTR	26216771	26216933	.	+	.	Parent=Os03t0666300-00
Chr03	irgsp1_rep	CDS	26216934	26217482	.	+	0	Parent=Os03t0666300-00
Chr03	irgsp1_rep	CDS	26217580	26218206	.	+	0	Parent=Os03t0666300-00
Chr03	irgsp1_rep	mRNA	26234213	26240648	.	+	.	ID=Os03t0666500-01;Name=Os03t0666500-01;Locus_id=Os03g0666500;Oryzabase Gene Symbol Synonym(s)=OsRab5B1%2C Rab5c%2C OsRab5c;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab5B1;Note=Similar to Ras-related protein RHA1.;Transcript_evidence=AK061203 (DDBJ%2C Best hit);ORF_evidence=B4F7V6 (UniProt);GO=Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225);NIAS_FLcDNA=006-210-B04;Oryzabase=11080;Expression=AK061203;TENOR=Os03t0666500-01;KEGG=Os03t0666500-01
Chr03	irgsp1_rep	five_prime_UTR	26234213	26234396	.	+	.	Parent=Os03t0666500-01
Chr03	irgsp1_rep	CDS	26234397	26234438	.	+	0	Parent=Os03t0666500-01
Chr03	irgsp1_rep	CDS	26235029	26235106	.	+	0	Parent=Os03t0666500-01
Chr03	irgsp1_rep	CDS	26235207	26235374	.	+	0	Parent=Os03t0666500-01
Chr03	irgsp1_rep	CDS	26236065	26236113	.	+	0	Parent=Os03t0666500-01
Chr03	irgsp1_rep	CDS	26236573	26236646	.	+	2	Parent=Os03t0666500-01
Chr03	irgsp1_rep	CDS	26239959	26240052	.	+	0	Parent=Os03t0666500-01
Chr03	irgsp1_rep	CDS	26240239	26240345	.	+	2	Parent=Os03t0666500-01
Chr03	irgsp1_rep	three_prime_UTR	26240346	26240648	.	+	.	Parent=Os03t0666500-01
Chr03	irgsp1_rep	mRNA	26234236	26240618	.	+	.	ID=Os03t0666500-02;Name=Os03t0666500-02;Locus_id=Os03g0666500;Oryzabase Gene Symbol Synonym(s)=OsRab5B1%2C Rab5c%2C OsRab5c;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab5B1;Note=Similar to Ras-related protein RHA1.;Transcript_evidence=AK100036 (DDBJ%2C Best hit);ORF_evidence=B4F7V6 (UniProt);GO=Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225);NIAS_FLcDNA=J013150K06;Oryzabase=11080;Expression=AK100036;TENOR=Os03t0666500-02;KEGG=Os03t0666500-02
Chr03	irgsp1_rep	five_prime_UTR	26234236	26234396	.	+	.	Parent=Os03t0666500-02
Chr03	irgsp1_rep	CDS	26234397	26234438	.	+	0	Parent=Os03t0666500-02
Chr03	irgsp1_rep	CDS	26235029	26235106	.	+	0	Parent=Os03t0666500-02
Chr03	irgsp1_rep	CDS	26235207	26235374	.	+	0	Parent=Os03t0666500-02
Chr03	irgsp1_rep	CDS	26236065	26236113	.	+	0	Parent=Os03t0666500-02
Chr03	irgsp1_rep	CDS	26236573	26236646	.	+	2	Parent=Os03t0666500-02
Chr03	irgsp1_rep	CDS	26239959	26240052	.	+	0	Parent=Os03t0666500-02
Chr03	irgsp1_rep	CDS	26240239	26240345	.	+	2	Parent=Os03t0666500-02
Chr03	irgsp1_rep	three_prime_UTR	26240346	26240618	.	+	.	Parent=Os03t0666500-02
Chr03	irgsp1_rep	mRNA	26234329	26240555	.	+	.	ID=Os03t0666500-03;Name=Os03t0666500-03;Locus_id=Os03g0666500;Oryzabase Gene Symbol Synonym(s)=OsRab5B1%2C Rab5c%2C OsRab5c;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab5B1;Note=Similar to Ras-related protein RHA1.;Transcript_evidence=AK067459 (DDBJ%2C Best hit);ORF_evidence=B4F7V6 (UniProt);GO=Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225);NIAS_FLcDNA=J013107F02;Oryzabase=11080;Expression=AK067459;TENOR=Os03t0666500-03;KEGG=Os03t0666500-03
Chr03	irgsp1_rep	five_prime_UTR	26234329	26234396	.	+	.	Parent=Os03t0666500-03
Chr03	irgsp1_rep	CDS	26234397	26234438	.	+	0	Parent=Os03t0666500-03
Chr03	irgsp1_rep	CDS	26235029	26235106	.	+	0	Parent=Os03t0666500-03
Chr03	irgsp1_rep	CDS	26235207	26235374	.	+	0	Parent=Os03t0666500-03
Chr03	irgsp1_rep	CDS	26236065	26236113	.	+	0	Parent=Os03t0666500-03
Chr03	irgsp1_rep	CDS	26236573	26236646	.	+	2	Parent=Os03t0666500-03
Chr03	irgsp1_rep	CDS	26239959	26240052	.	+	0	Parent=Os03t0666500-03
Chr03	irgsp1_rep	CDS	26240239	26240345	.	+	2	Parent=Os03t0666500-03
Chr03	irgsp1_rep	three_prime_UTR	26240346	26240555	.	+	.	Parent=Os03t0666500-03
Chr03	irgsp1_rep	mRNA	26236032	26240498	.	-	.	ID=Os03t0666550-00;Name=Os03t0666550-00;Locus_id=Os03g0666550;Note=Hypothetical protein.;Transcript_evidence=tplb0055b17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0666550-00
Chr03	irgsp1_rep	five_prime_UTR	26240221	26240498	.	-	.	Parent=Os03t0666550-00
Chr03	irgsp1_rep	CDS	26240149	26240220	.	-	0	Parent=Os03t0666550-00
Chr03	irgsp1_rep	CDS	26239938	26240090	.	-	0	Parent=Os03t0666550-00
Chr03	irgsp1_rep	three_prime_UTR	26239688	26239937	.	-	.	Parent=Os03t0666550-00
Chr03	irgsp1_rep	three_prime_UTR	26236476	26236711	.	-	.	Parent=Os03t0666550-00
Chr03	irgsp1_rep	three_prime_UTR	26236032	26236214	.	-	.	Parent=Os03t0666550-00
Chr03	irgsp1_rep	mRNA	26237736	26239446	.	-	.	ID=Os03t0666600-01;Name=Os03t0666600-01;Locus_id=Os03g0666600;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK064709 (DDBJ%2C Best hit);ORF_evidence=NP_001151546.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=002-118-B04;Expression=AK064709;TENOR=Os03t0666600-01;KEGG=Os03t0666600-01
Chr03	irgsp1_rep	five_prime_UTR	26239367	26239446	.	-	.	Parent=Os03t0666600-01
Chr03	irgsp1_rep	CDS	26237903	26239366	.	-	0	Parent=Os03t0666600-01
Chr03	irgsp1_rep	three_prime_UTR	26237736	26237902	.	-	.	Parent=Os03t0666600-01
Chr03	irgsp1_rep	mRNA	26240893	26244246	.	-	.	ID=Os03t0666700-01;Name=Os03t0666700-01;Locus_id=Os03g0666700;Oryzabase Gene Name Synonym(s)=transmembrane protein 56;Note=TRAM%2C LAG1 and CLN8 homology domain containing protein.;Transcript_evidence=AK061721 (DDBJ%2C Best hit),AK061309 (DDBJ%2C Best hit),AK102010 (DDBJ%2C Best hit);ORF_evidence=NP_001149791.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=TRAM/LAG1/CLN8 homology domain (IPR006634);NIAS_FLcDNA=001-038-A02,006-302-A11,J033080C05;Oryzabase=21866;TENOR=Os03t0666700-01
Chr03	irgsp1_rep	five_prime_UTR	26244080	26244246	.	-	.	Parent=Os03t0666700-01
Chr03	irgsp1_rep	five_prime_UTR	26243810	26243839	.	-	.	Parent=Os03t0666700-01
Chr03	irgsp1_rep	CDS	26243696	26243809	.	-	0	Parent=Os03t0666700-01
Chr03	irgsp1_rep	CDS	26242765	26242853	.	-	0	Parent=Os03t0666700-01
Chr03	irgsp1_rep	CDS	26242537	26242672	.	-	1	Parent=Os03t0666700-01
Chr03	irgsp1_rep	CDS	26242357	26242431	.	-	0	Parent=Os03t0666700-01
Chr03	irgsp1_rep	CDS	26242059	26242180	.	-	0	Parent=Os03t0666700-01
Chr03	irgsp1_rep	CDS	26241891	26241966	.	-	1	Parent=Os03t0666700-01
Chr03	irgsp1_rep	CDS	26241471	26241530	.	-	0	Parent=Os03t0666700-01
Chr03	irgsp1_rep	CDS	26241216	26241344	.	-	0	Parent=Os03t0666700-01
Chr03	irgsp1_rep	three_prime_UTR	26240893	26241215	.	-	.	Parent=Os03t0666700-01
Chr03	irgsp1_rep	mRNA	26246553	26247660	.	+	.	ID=Os03t0666800-01;Name=Os03t0666800-01;Locus_id=Os03g0666800;Note=Conserved hypothetical protein.;Transcript_evidence=AK066530 (DDBJ%2C Best hit);ORF_evidence=A2ZPY9 (UniProt);NIAS_FLcDNA=J013072I02;TENOR=Os03t0666800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	26246553	26246692	.	+	.	Parent=Os03t0666800-01
Chr03	irgsp1_rep	CDS	26246693	26246938	.	+	0	Parent=Os03t0666800-01
Chr03	irgsp1_rep	three_prime_UTR	26246939	26247660	.	+	.	Parent=Os03t0666800-01
Chr03	irgsp1_rep	mRNA	26248916	26251894	.	-	.	ID=Os03t0666850-01;Name=Os03t0666850-01;Locus_id=Os03g0666850;Note=Hypothetical conserved gene.;Transcript_evidence=AK240914 (DDBJ%2C Best hit);ORF_evidence=B9ETH0 (UniProt);NIAS_FLcDNA=J065037F06;TENOR=Os03t0666850-01;KEGG=Os03t0666850-01
Chr03	irgsp1_rep	five_prime_UTR	26251395	26251894	.	-	.	Parent=Os03t0666850-01
Chr03	irgsp1_rep	CDS	26251229	26251394	.	-	0	Parent=Os03t0666850-01
Chr03	irgsp1_rep	CDS	26250916	26251130	.	-	2	Parent=Os03t0666850-01
Chr03	irgsp1_rep	three_prime_UTR	26248916	26250915	.	-	.	Parent=Os03t0666850-01
Chr03	irgsp1_rep	mRNA	26263666	26267256	.	-	.	ID=Os03t0667100-01;Name=Os03t0667100-01;Locus_id=Os03g0667100;RAP-DB Gene Symbol Synonym(s)=OsNPR3.1%2C OsNPR3%2C OsNH3;RAP-DB Gene Name Synonym(s)=Non Expressor of PR genes 3.1;CGSNL Gene Symbol=NH3;CGSNL Gene Name=NPR1 HOMOLOG 3;Oryzabase Gene Symbol Synonym(s)=OsNPR3%2C OsNH3%2C NPR3%2C OsNPR3.1%2C OsNPR3.2%2C OsNPR3.3;Oryzabase Gene Name Synonym(s)=NPR1-like gene 3%2C NPR1 homolog 3%2C NPR1 paralog 3;Note=Rice NPR1 paralog 3%2C Disease resistance;Transcript_evidence=AK065952;ORF_evidence=Q75HA6;GO=Molecular Function: protein binding (GO:0005515);InterPro=SKP1/BTB/POZ domain superfamily (IPR011333),Ankyrin repeat-containing domain superfamily (IPR036770),BTB/POZ domain (IPR000210),Regulatory protein NPR%2C central domain (IPR024228),Ankyrin repeat-containing domain (IPR020683),NPR1/NIM1-like%2C C-terminal (IPR021094),Ankyrin repeat (IPR002110);NIAS_FLcDNA=J013045I05;Manual Curation=April 16%2C 2020;Literature_PMID=32286394,20561248;Oryzabase=11881;Expression=AK065952;TENOR=Os03t0667100-01;KEGG=Os03t0667100-01
Chr03	irgsp1_rep	five_prime_UTR	26266655	26267256	.	-	.	Parent=Os03t0667100-01
Chr03	irgsp1_rep	CDS	26266115	26266654	.	-	0	Parent=Os03t0667100-01
Chr03	irgsp1_rep	CDS	26265140	26265899	.	-	0	Parent=Os03t0667100-01
Chr03	irgsp1_rep	CDS	26264493	26264684	.	-	2	Parent=Os03t0667100-01
Chr03	irgsp1_rep	CDS	26264094	26264371	.	-	2	Parent=Os03t0667100-01
Chr03	irgsp1_rep	three_prime_UTR	26263666	26264093	.	-	.	Parent=Os03t0667100-01
Chr03	irgsp1_rep	mRNA	26259737	26267248	.	-	.	ID=Os03t0667100-02;Name=Os03t0667100-02;Locus_id=Os03g0667100;RAP-DB Gene Symbol Synonym(s)=OsNPR3.3;RAP-DB Gene Name Synonym(s)=Non Expressor of PR genes 3.3;Oryzabase Gene Symbol Synonym(s)=OsNPR3%2C OsNH3%2C NPR3%2C NH3;Oryzabase Gene Name Synonym(s)=NPR1-like gene 3;Note=Paralog of Non Expressor of PR genes 1 (OsNPR1)%2C Bacterial blight resistance;Transcript_evidence=AK065363;ORF_evidence=Q75HA6-2;GO=Molecular Function: protein binding (GO:0005515);InterPro=SKP1/BTB/POZ domain superfamily (IPR011333),Ankyrin repeat-containing domain superfamily (IPR036770),BTB/POZ domain (IPR000210),Regulatory protein NPR%2C central domain (IPR024228),Ankyrin repeat-containing domain (IPR020683),NPR1/NIM1-like%2C C-terminal (IPR021094),Ankyrin repeat (IPR002110);NIAS_FLcDNA=J013003I09;Manual Curation=April 15%2C 2020;Literature_PMID=32286394;Oryzabase=11881;Expression=AK065363;TENOR=Os03t0667100-02;Subcellular location=nucleus (GO:0005634)
Chr03	irgsp1_rep	five_prime_UTR	26266655	26267248	.	-	.	Parent=Os03t0667100-02
Chr03	irgsp1_rep	CDS	26266115	26266654	.	-	0	Parent=Os03t0667100-02
Chr03	irgsp1_rep	CDS	26265140	26265899	.	-	0	Parent=Os03t0667100-02
Chr03	irgsp1_rep	CDS	26264493	26264684	.	-	2	Parent=Os03t0667100-02
Chr03	irgsp1_rep	CDS	26264146	26264371	.	-	2	Parent=Os03t0667100-02
Chr03	irgsp1_rep	CDS	26261244	26261247	.	-	1	Parent=Os03t0667100-02
Chr03	irgsp1_rep	three_prime_UTR	26260985	26261243	.	-	.	Parent=Os03t0667100-02
Chr03	irgsp1_rep	three_prime_UTR	26259737	26260906	.	-	.	Parent=Os03t0667100-02
Chr03	irgsp1_rep	mRNA	26261328	26265751	.	-	.	ID=Os03t0667100-03;Name=Os03t0667100-03;Locus_id=Os03g0667100;CGSNL Gene Symbol=NH3;CGSNL Gene Name=NPR1 HOMOLOG 3;Oryzabase Gene Symbol Synonym(s)=OsNPR3%2C OsNH3%2C NPR3%2C OsNPR3.1%2C OsNPR3.2%2C OsNPR3.3;Oryzabase Gene Name Synonym(s)=NPR1-like gene 3%2C NPR1 homolog 3%2C NPR1 paralog 3;Note=Similar to BTB/POZ domain containing protein%2C expressed.;Transcript_evidence=AK101223 (DDBJ%2C Best hit);ORF_evidence=Q10FI1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683),NPR1/NIM1-like%2C C-terminal (IPR021094);NIAS_FLcDNA=J033031D05;Oryzabase=11881;Expression=AK101223;TENOR=Os03t0667100-03;KEGG=Os03t0667100-03
Chr03	irgsp1_rep	five_prime_UTR	26265606	26265751	.	-	.	Parent=Os03t0667100-03
Chr03	irgsp1_rep	CDS	26265140	26265605	.	-	0	Parent=Os03t0667100-03
Chr03	irgsp1_rep	CDS	26264493	26264684	.	-	2	Parent=Os03t0667100-03
Chr03	irgsp1_rep	CDS	26264146	26264371	.	-	2	Parent=Os03t0667100-03
Chr03	irgsp1_rep	CDS	26261814	26261847	.	-	1	Parent=Os03t0667100-03
Chr03	irgsp1_rep	three_prime_UTR	26261328	26261813	.	-	.	Parent=Os03t0667100-03
Chr03	irgsp1_rep	mRNA	26264091	26266655	.	+	.	ID=Os03t0667150-00;Name=Os03t0667150-00;Locus_id=Os03g0667150;Note=Hypothetical protein.;Transcript_evidence=tplb0036n13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0667150-00
Chr03	irgsp1_rep	five_prime_UTR	26264091	26264091	.	+	.	Parent=Os03t0667150-00
Chr03	irgsp1_rep	CDS	26264092	26264359	.	+	0	Parent=Os03t0667150-00
Chr03	irgsp1_rep	CDS	26264482	26264573	.	+	2	Parent=Os03t0667150-00
Chr03	irgsp1_rep	three_prime_UTR	26264574	26264684	.	+	.	Parent=Os03t0667150-00
Chr03	irgsp1_rep	three_prime_UTR	26265140	26265951	.	+	.	Parent=Os03t0667150-00
Chr03	irgsp1_rep	three_prime_UTR	26266064	26266655	.	+	.	Parent=Os03t0667150-00
Chr03	irgsp1_rep	mRNA	26268250	26268366	.	+	.	ID=Os03t0667201-00;Name=Os03t0667201-00;Locus_id=Os03g0667201;Note=Photosystem II reaction center protein L.;Transcript_evidence=P0C416 (UniProt);ORF_evidence=P0C416 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: photosystem II reaction center (GO:0009539),Cellular Component: membrane (GO:0016020);InterPro=Photosystem II PsbL (IPR003372);TENOR=Os03t0667201-00
Chr03	irgsp1_rep	CDS	26268250	26268366	.	+	0	Parent=Os03t0667201-00
Chr03	irgsp1_rep	mRNA	26276422	26277614	.	-	.	ID=Os03t0667300-00;Name=Os03t0667300-00;Locus_id=Os03g0667300;CGSNL Gene Symbol=IRT2;CGSNL Gene Name=IRON-REGULATED TRANSPORTER 2;Oryzabase Gene Symbol Synonym(s)=OsIRT2%2C OsIRT1;Oryzabase Gene Name Synonym(s)=IRON-REGULATED TRANSPORTER2;Note=Similar to Metal transport protein.;Transcript_evidence=AB126086 (DDBJ%2C Best hit);ORF_evidence=Q6L8G1 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Biological Process: transmembrane transport (GO:0055085),Biological Process: zinc ion transmembrane transport (GO:0071577),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: zinc ion transmembrane transporter activity (GO:0005385),Molecular Function: metal ion transmembrane transporter activity (GO:0046873);InterPro=Zinc/iron permease (IPR003689),Zinc/iron permease%2C fungal/plant (IPR004698);Oryzabase=9427;TENOR=Os03t0667300-00;KEGG=Os03t0667300-00
Chr03	irgsp1_rep	CDS	26276958	26277614	.	-	0	Parent=Os03t0667300-00
Chr03	irgsp1_rep	CDS	26276422	26276877	.	-	0	Parent=Os03t0667300-00
Chr03	irgsp1_rep	mRNA	26283668	26287175	.	+	.	ID=Os03t0667400-01;Name=Os03t0667400-01;Locus_id=Os03g0667400;Note=Similar to Iron regulated metal transporter.;Transcript_evidence=AK119409 (DDBJ%2C Best hit);ORF_evidence=NP_178033.1 (RefSeq);InterPro=Plant organelle RNA recognition domain (IPR021099);NIAS_FLcDNA=001-132-F05;Expression=AK119409;TENOR=Os03t0667400-01;KEGG=Os03t0667400-01
Chr03	irgsp1_rep	five_prime_UTR	26283668	26283668	.	+	.	Parent=Os03t0667400-01
Chr03	irgsp1_rep	CDS	26283669	26284196	.	+	0	Parent=Os03t0667400-01
Chr03	irgsp1_rep	three_prime_UTR	26284197	26286049	.	+	.	Parent=Os03t0667400-01
Chr03	irgsp1_rep	three_prime_UTR	26286440	26287175	.	+	.	Parent=Os03t0667400-01
Chr03	irgsp1_rep	mRNA	26286254	26292018	.	-	.	ID=Os03t0667500-01;Name=Os03t0667500-01;Locus_id=Os03g0667500;RAP-DB Gene Symbol Synonym(s)=OsIRT1;RAP-DB Gene Name Synonym(s)=Iron-regulated Transporter 1;CGSNL Gene Symbol=ZIP10%2C IRT1;CGSNL Gene Name=ZINC TRANSPORTER 10%2C IRON-REGULATED TRANSPORTER 1;Oryzabase Gene Symbol Synonym(s)=OsZIP10%2C OsIRT1;Oryzabase Gene Name Synonym(s)=zinc transporter 10%2C Zrt-Irt-like protein 10%2C IRON-REGULATED TRANSPORTER1;Note=Fe<sup>2+</sup> transporter%2C Uptake of iron;Transcript_evidence=AK107681;ORF_evidence=Q75HB1;GO=Biological Process: metal ion transport (GO:0030001),Biological Process: transmembrane transport (GO:0055085),Biological Process: zinc ion transmembrane transport (GO:0071577),Molecular Function: zinc ion transmembrane transporter activity (GO:0005385),Molecular Function: metal ion transmembrane transporter activity (GO:0046873),Cellular Component: membrane (GO:0016020),Cellular Component: integral component of membrane (GO:0016021);InterPro=Zinc/iron permease (IPR003689),Zinc/iron permease%2C fungal/plant (IPR004698);NIAS_FLcDNA=002-132-A08;Manual Curation=November 2%2C 2020;Literature_PMID=19183299,16412081;Oryzabase=8373,9295;Expression=AK107681;TENOR=Os03t0667500-01;KEGG=Os03t0667500-01;Subcellular location=plasma membrane (GO:0005886)
Chr03	irgsp1_rep	five_prime_UTR	26291964	26292018	.	-	.	Parent=Os03t0667500-01
Chr03	irgsp1_rep	CDS	26291295	26291963	.	-	0	Parent=Os03t0667500-01
Chr03	irgsp1_rep	CDS	26286479	26286934	.	-	0	Parent=Os03t0667500-01
Chr03	irgsp1_rep	three_prime_UTR	26286254	26286478	.	-	.	Parent=Os03t0667500-01
Chr03	irgsp1_rep	mRNA	26293277	26298494	.	-	.	ID=Os03t0667700-01;Name=Os03t0667700-01;Locus_id=Os03g0667700;Note=Similar to RanBP1 domain containing protein%2C expressed.;Transcript_evidence=AK240716 (DDBJ%2C Best hit);ORF_evidence=Q10FH4 (UniProt);GO=Biological Process: intracellular transport (GO:0046907),Molecular Function: protein binding (GO:0005515);InterPro=Ran binding protein 1 (IPR000156),Pleckstrin homology-type (IPR011993);NIAS_FLcDNA=J043022O19;TENOR=Os03t0667700-01;KEGG=Os03t0667700-01
Chr03	irgsp1_rep	five_prime_UTR	26298257	26298494	.	-	.	Parent=Os03t0667700-01
Chr03	irgsp1_rep	five_prime_UTR	26297771	26297788	.	-	.	Parent=Os03t0667700-01
Chr03	irgsp1_rep	CDS	26297634	26297770	.	-	0	Parent=Os03t0667700-01
Chr03	irgsp1_rep	CDS	26297204	26297291	.	-	1	Parent=Os03t0667700-01
Chr03	irgsp1_rep	CDS	26296307	26296559	.	-	0	Parent=Os03t0667700-01
Chr03	irgsp1_rep	CDS	26296036	26296215	.	-	2	Parent=Os03t0667700-01
Chr03	irgsp1_rep	CDS	26295249	26295290	.	-	2	Parent=Os03t0667700-01
Chr03	irgsp1_rep	CDS	26294983	26295080	.	-	2	Parent=Os03t0667700-01
Chr03	irgsp1_rep	CDS	26294729	26294848	.	-	0	Parent=Os03t0667700-01
Chr03	irgsp1_rep	CDS	26294282	26294371	.	-	0	Parent=Os03t0667700-01
Chr03	irgsp1_rep	CDS	26293647	26293772	.	-	0	Parent=Os03t0667700-01
Chr03	irgsp1_rep	three_prime_UTR	26293277	26293646	.	-	.	Parent=Os03t0667700-01
Chr03	irgsp1_rep	mRNA	26308766	26309724	.	-	.	ID=Os03t0667800-00;Name=Os03t0667800-00;Locus_id=Os03g0667800;Oryzabase Gene Symbol Synonym(s)=RPS21%2C OsRPS21;Oryzabase Gene Name Synonym(s)=ribosomal protein S21%2C ribosomal protein small subunit 21;Note=Ribosomal protein S21e family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=P35687 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S21e (IPR001931),Ribosomal protein S21e%2C conserved site (IPR018279);Oryzabase=22183;TENOR=Os03t0667800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	26309675	26309724	.	-	0	Parent=Os03t0667800-00
Chr03	irgsp1_rep	CDS	26309452	26309584	.	-	1	Parent=Os03t0667800-00
Chr03	irgsp1_rep	CDS	26308766	26308831	.	-	0	Parent=Os03t0667800-00
Chr03	irgsp1_rep	mRNA	26317071	26319485	.	+	.	ID=Os03t0668000-01;Name=Os03t0668000-01;Locus_id=Os03g0668000;Oryzabase Gene Symbol Synonym(s)=OsFbox163%2C Os_F0009;Oryzabase Gene Name Synonym(s)=F-box protein 163;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK111705 (DDBJ%2C Best hit);ORF_evidence=Q10L74 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023013A18;Oryzabase=16952;Expression=AK111705;TENOR=Os03t0668000-01;KEGG=Os03t0668000-01
Chr03	irgsp1_rep	five_prime_UTR	26317071	26317347	.	+	.	Parent=Os03t0668000-01
Chr03	irgsp1_rep	CDS	26317348	26318087	.	+	0	Parent=Os03t0668000-01
Chr03	irgsp1_rep	CDS	26318193	26318811	.	+	1	Parent=Os03t0668000-01
Chr03	irgsp1_rep	three_prime_UTR	26318812	26319485	.	+	.	Parent=Os03t0668000-01
Chr03	irgsp1_rep	mRNA	26317083	26318921	.	+	.	ID=Os03t0668000-02;Name=Os03t0668000-02;Locus_id=Os03g0668000;Oryzabase Gene Symbol Synonym(s)=OsFbox163%2C Os_F0009;Oryzabase Gene Name Synonym(s)=F-box protein 163;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK111783 (DDBJ%2C Best hit);ORF_evidence=Q10L74 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023087J12;Oryzabase=16952;Expression=AK111783;TENOR=Os03t0668000-02;KEGG=Os03t0668000-02
Chr03	irgsp1_rep	five_prime_UTR	26317083	26317226	.	+	.	Parent=Os03t0668000-02
Chr03	irgsp1_rep	five_prime_UTR	26317299	26317347	.	+	.	Parent=Os03t0668000-02
Chr03	irgsp1_rep	CDS	26317348	26318087	.	+	0	Parent=Os03t0668000-02
Chr03	irgsp1_rep	CDS	26318193	26318811	.	+	1	Parent=Os03t0668000-02
Chr03	irgsp1_rep	three_prime_UTR	26318812	26318921	.	+	.	Parent=Os03t0668000-02
Chr03	irgsp1_rep	mRNA	26320544	26323632	.	-	.	ID=Os03t0668033-01;Name=Os03t0668033-01;Locus_id=Os03g0668033;Note=Hypothetical gene.;Transcript_evidence=AK288472 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090037K20;TENOR=Os03t0668033-01;KEGG=Os03t0668033-01
Chr03	irgsp1_rep	five_prime_UTR	26320998	26323632	.	-	.	Parent=Os03t0668033-01
Chr03	irgsp1_rep	CDS	26320722	26320997	.	-	0	Parent=Os03t0668033-01
Chr03	irgsp1_rep	three_prime_UTR	26320544	26320721	.	-	.	Parent=Os03t0668033-01
Chr03	irgsp1_rep	mRNA	26325989	26327533	.	+	.	ID=Os03t0668100-00;Name=Os03t0668100-00;Locus_id=Os03g0668100;Oryzabase Gene Symbol Synonym(s)=OsFbox164%2C Os_F0040;Oryzabase Gene Name Synonym(s)=F-box protein 164;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=tplb0009f23 (Wheat FLcDNA);ORF_evidence=GeneMark;GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=16953;TENOR=Os03t0668100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	26325989	26326323	.	+	0	Parent=Os03t0668100-00
Chr03	irgsp1_rep	CDS	26327109	26327533	.	+	1	Parent=Os03t0668100-00
Chr03	irgsp1_rep	mRNA	26344497	26351566	.	+	.	ID=Os03t0668400-01;Name=Os03t0668400-01;Locus_id=Os03g0668400;Note=Peptidase C12%2C ubiquitin carboxyl-terminal hydrolase 1 domain containing protein.;Transcript_evidence=AK119454 (DDBJ%2C Best hit);ORF_evidence=NP_178033.1 (RefSeq);InterPro=Plant organelle RNA recognition domain (IPR021099);NIAS_FLcDNA=001-133-E01;Expression=AK119454;TENOR=Os03t0668400-01;KEGG=Os03t0668400-01
Chr03	irgsp1_rep	five_prime_UTR	26344497	26344695	.	+	.	Parent=Os03t0668400-01
Chr03	irgsp1_rep	five_prime_UTR	26345347	26345433	.	+	.	Parent=Os03t0668400-01
Chr03	irgsp1_rep	CDS	26345434	26346354	.	+	0	Parent=Os03t0668400-01
Chr03	irgsp1_rep	three_prime_UTR	26346355	26346881	.	+	.	Parent=Os03t0668400-01
Chr03	irgsp1_rep	three_prime_UTR	26348091	26348227	.	+	.	Parent=Os03t0668400-01
Chr03	irgsp1_rep	three_prime_UTR	26348527	26349212	.	+	.	Parent=Os03t0668400-01
Chr03	irgsp1_rep	three_prime_UTR	26350039	26350149	.	+	.	Parent=Os03t0668400-01
Chr03	irgsp1_rep	three_prime_UTR	26350247	26350313	.	+	.	Parent=Os03t0668400-01
Chr03	irgsp1_rep	three_prime_UTR	26350419	26350591	.	+	.	Parent=Os03t0668400-01
Chr03	irgsp1_rep	three_prime_UTR	26351122	26351566	.	+	.	Parent=Os03t0668400-01
Chr03	irgsp1_rep	mRNA	26363077	26364417	.	+	.	ID=Os03t0668500-01;Name=Os03t0668500-01;Locus_id=Os03g0668500;CGSNL Gene Symbol=SIP31;CGSNL Gene Name=SKIPA-INTERACTING PROTEIN 31;Oryzabase Gene Symbol Synonym(s)=OsSIP31;Oryzabase Gene Name Synonym(s)=SKIP interacting protein 31%2C SKIPa-interacting protein 31%2C SKIPa-interacting protein 31;Note=Conserved hypothetical protein.;Transcript_evidence=AK064871 (DDBJ%2C Best hit);ORF_evidence=Q7Y198 (UniProt);NIAS_FLcDNA=J013000J03;Oryzabase=9963;Expression=AK064871;TENOR=Os03t0668500-01;KEGG=Os03t0668500-01
Chr03	irgsp1_rep	five_prime_UTR	26363077	26363154	.	+	.	Parent=Os03t0668500-01
Chr03	irgsp1_rep	CDS	26363155	26363424	.	+	0	Parent=Os03t0668500-01
Chr03	irgsp1_rep	CDS	26364137	26364196	.	+	0	Parent=Os03t0668500-01
Chr03	irgsp1_rep	three_prime_UTR	26364197	26364417	.	+	.	Parent=Os03t0668500-01
Chr03	irgsp1_rep	mRNA	26377651	26379867	.	+	.	ID=Os03t0668900-01;Name=Os03t0668900-01;Locus_id=Os03g0668900;Note=Similar to acidic leucine-rich nuclear phosphoprotein 32 family member A.;Transcript_evidence=AK108369 (DDBJ%2C Best hit);ORF_evidence=NP_001152645.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=002-142-D06;Expression=AK108369;TENOR=Os03t0668900-01;KEGG=Os03t0668900-01
Chr03	irgsp1_rep	five_prime_UTR	26377651	26377738	.	+	.	Parent=Os03t0668900-01
Chr03	irgsp1_rep	CDS	26377739	26378416	.	+	0	Parent=Os03t0668900-01
Chr03	irgsp1_rep	CDS	26379473	26379613	.	+	0	Parent=Os03t0668900-01
Chr03	irgsp1_rep	three_prime_UTR	26379614	26379867	.	+	.	Parent=Os03t0668900-01
Chr03	irgsp1_rep	mRNA	26380709	26385454	.	-	.	ID=Os03t0669000-01;Name=Os03t0669000-01;Locus_id=Os03g0669000;RAP-DB Gene Symbol Synonym(s)=TOGR1%2C DDX47%2C OsRH10;RAP-DB Gene Name Synonym(s)=THERMOTOLERANT GROWTH REQUIRED1%2C ATP-dependent RNA helicase DDX47%2C RNA helicase 10%2C thermotolerant growth required1;CGSNL Gene Symbol=TOGR1;CGSNL Gene Name=THERMOTOLERANT GROWTH REQUIRED1;Oryzabase Gene Symbol Synonym(s)=DDX47%2C OsRH10;Oryzabase Gene Name Synonym(s)=ATP-dependent RNA helicase DDX47%2C RNA helicase 10%2C thermotolerant growth required1;Note=DEAD-box RNA helicase%2C Regulation of thermotolerant growth%2C rRNA homeostasis at high temperature;Transcript_evidence=AK067769;ORF_evidence=Q7Y183;GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: ATP binding (GO:0005524);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014),Helicase superfamily 1/2%2C ATP-binding domain (IPR014001),DEAD/DEAH box helicase domain (IPR011545),Helicase%2C C-terminal (IPR001650),ATP-dependent RNA helicase DEAD-box%2C conserved site (IPR000629);NIAS_FLcDNA=J013120J20;Manual Curation=February 22%2C 2016;Literature_PMID=26848586;Oryzabase=11603;Expression=AK067769;TENOR=Os03t0669000-01;KEGG=Os03t0669000-01
Chr03	irgsp1_rep	five_prime_UTR	26385325	26385454	.	-	.	Parent=Os03t0669000-01
Chr03	irgsp1_rep	CDS	26385093	26385324	.	-	0	Parent=Os03t0669000-01
Chr03	irgsp1_rep	CDS	26384873	26385002	.	-	2	Parent=Os03t0669000-01
Chr03	irgsp1_rep	CDS	26384686	26384755	.	-	1	Parent=Os03t0669000-01
Chr03	irgsp1_rep	CDS	26384047	26384109	.	-	0	Parent=Os03t0669000-01
Chr03	irgsp1_rep	CDS	26383802	26383876	.	-	0	Parent=Os03t0669000-01
Chr03	irgsp1_rep	CDS	26383029	26383148	.	-	0	Parent=Os03t0669000-01
Chr03	irgsp1_rep	CDS	26382623	26382664	.	-	0	Parent=Os03t0669000-01
Chr03	irgsp1_rep	CDS	26382454	26382528	.	-	0	Parent=Os03t0669000-01
Chr03	irgsp1_rep	CDS	26382000	26382146	.	-	0	Parent=Os03t0669000-01
Chr03	irgsp1_rep	CDS	26381707	26381844	.	-	0	Parent=Os03t0669000-01
Chr03	irgsp1_rep	CDS	26381514	26381625	.	-	0	Parent=Os03t0669000-01
Chr03	irgsp1_rep	CDS	26381325	26381413	.	-	2	Parent=Os03t0669000-01
Chr03	irgsp1_rep	CDS	26380976	26381101	.	-	0	Parent=Os03t0669000-01
Chr03	irgsp1_rep	three_prime_UTR	26380709	26380975	.	-	.	Parent=Os03t0669000-01
Chr03	irgsp1_rep	mRNA	26380755	26385453	.	-	.	ID=Os03t0669000-02;Name=Os03t0669000-02;Locus_id=Os03g0669000;CGSNL Gene Symbol=TOGR1;CGSNL Gene Name=THERMOTOLERANT GROWTH REQUIRED1;Oryzabase Gene Symbol Synonym(s)=DDX47%2C OsRH10;Oryzabase Gene Name Synonym(s)=ATP-dependent RNA helicase DDX47%2C RNA helicase 10%2C thermotolerant growth required1;Note=Similar to cDNA clone:J013120J20%2C full insert sequence.;Transcript_evidence=AK099820 (DDBJ%2C Best hit);ORF_evidence=B7EDZ1 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=J013100J10;Oryzabase=11603;Expression=AK099820;TENOR=Os03t0669000-02;KEGG=Os03t0669000-02
Chr03	irgsp1_rep	five_prime_UTR	26385325	26385453	.	-	.	Parent=Os03t0669000-02
Chr03	irgsp1_rep	CDS	26385093	26385324	.	-	0	Parent=Os03t0669000-02
Chr03	irgsp1_rep	CDS	26384873	26385002	.	-	2	Parent=Os03t0669000-02
Chr03	irgsp1_rep	CDS	26384686	26384755	.	-	1	Parent=Os03t0669000-02
Chr03	irgsp1_rep	CDS	26384032	26384109	.	-	0	Parent=Os03t0669000-02
Chr03	irgsp1_rep	three_prime_UTR	26382623	26384031	.	-	.	Parent=Os03t0669000-02
Chr03	irgsp1_rep	three_prime_UTR	26382000	26382528	.	-	.	Parent=Os03t0669000-02
Chr03	irgsp1_rep	three_prime_UTR	26381707	26381844	.	-	.	Parent=Os03t0669000-02
Chr03	irgsp1_rep	three_prime_UTR	26381514	26381625	.	-	.	Parent=Os03t0669000-02
Chr03	irgsp1_rep	three_prime_UTR	26381325	26381413	.	-	.	Parent=Os03t0669000-02
Chr03	irgsp1_rep	three_prime_UTR	26380755	26381101	.	-	.	Parent=Os03t0669000-02
Chr03	irgsp1_rep	mRNA	26396424	26397374	.	-	.	ID=Os03t0669100-01;Name=Os03t0669100-01;Locus_id=Os03g0669100;Note=Similar to predicted protein.;Transcript_evidence=AK063742 (DDBJ%2C Best hit);ORF_evidence=Q10FF9 (UniProt);GO=Biological Process: dUTP metabolic process (GO:0046080),Molecular Function: dUTP diphosphatase activity (GO:0004170),Molecular Function: hydrolase activity (GO:0016787);InterPro=DeoxyUTP pyrophosphatase (IPR008180),DeoxyUTP pyrophosphatase%2C dUTPase subfamily (IPR008181);NIAS_FLcDNA=001-120-F09;Oryzabase=19979;Expression=AK063742;TENOR=Os03t0669100-01;KEGG=Os03t0669100-01 (EC:3.6.1.23)
Chr03	irgsp1_rep	five_prime_UTR	26397293	26397374	.	-	.	Parent=Os03t0669100-01
Chr03	irgsp1_rep	CDS	26397114	26397292	.	-	0	Parent=Os03t0669100-01
Chr03	irgsp1_rep	CDS	26396925	26397016	.	-	1	Parent=Os03t0669100-01
Chr03	irgsp1_rep	CDS	26396622	26396837	.	-	2	Parent=Os03t0669100-01
Chr03	irgsp1_rep	CDS	26396448	26396548	.	-	2	Parent=Os03t0669100-01
Chr03	irgsp1_rep	three_prime_UTR	26396424	26396447	.	-	.	Parent=Os03t0669100-01
Chr03	irgsp1_rep	mRNA	26396385	26397372	.	-	.	ID=Os03t0669100-02;Name=Os03t0669100-02;Locus_id=Os03g0669100;Note=Similar to Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23) (dUTPase) (dUTP pyrophosphatase) (P18).;Transcript_evidence=AK063633 (DDBJ%2C Best hit);ORF_evidence=Q10FF9 (UniProt);GO=Biological Process: dUTP metabolic process (GO:0046080),Molecular Function: dUTP diphosphatase activity (GO:0004170),Molecular Function: hydrolase activity (GO:0016787);InterPro=DeoxyUTP pyrophosphatase (IPR008180),DeoxyUTP pyrophosphatase%2C dUTPase subfamily (IPR008181);NIAS_FLcDNA=001-118-F11;Oryzabase=19979;Expression=AK063633;TENOR=Os03t0669100-02;KEGG=Os03t0669100-02 (EC:3.6.1.23)
Chr03	irgsp1_rep	five_prime_UTR	26397293	26397372	.	-	.	Parent=Os03t0669100-02
Chr03	irgsp1_rep	CDS	26397114	26397292	.	-	0	Parent=Os03t0669100-02
Chr03	irgsp1_rep	CDS	26396925	26397016	.	-	1	Parent=Os03t0669100-02
Chr03	irgsp1_rep	CDS	26396629	26396837	.	-	2	Parent=Os03t0669100-02
Chr03	irgsp1_rep	CDS	26396510	26396572	.	-	0	Parent=Os03t0669100-02
Chr03	irgsp1_rep	three_prime_UTR	26396385	26396509	.	-	.	Parent=Os03t0669100-02
Chr03	irgsp1_rep	mRNA	26398641	26406492	.	-	.	ID=Os03t0669200-01;Name=Os03t0669200-01;Locus_id=Os03g0669200;RAP-DB Gene Symbol Synonym(s)=OsWD40-80%2C RGbeta1%2C RGB1;RAP-DB Gene Name Synonym(s)=heterotrimeric G protein beta 1 subunit%2C heterotrimeric G protein b-subunit 1%2C G protein beta subunit 1;CGSNL Gene Symbol=RGB1;CGSNL Gene Name=RICE G PROTEIN BETA SUBUNIT 1;Oryzabase Gene Symbol Synonym(s)=OsWD40-80%2C RGbeta1%2C OsRGB1;Oryzabase Gene Name Synonym(s)=heterotrimeric G protein beta 1 subunit%2C heterotrimeric G protein b-subunit 1%2C G protein beta subunit 1;Note=Heterotrimeric G protein b-subunit%2C Regulation of cellular proliferation%2C Seed fertility;Transcript_evidence=X89737,AK242811;ORF_evidence=Q40687,Q10FF8;GO=Molecular Function: protein binding (GO:0005515);InterPro=Guanine nucleotide-binding protein%2C beta subunit (IPR016346),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),G-protein%2C beta subunit (IPR001632),WD40 repeat (IPR001680),G-protein beta WD-40 repeat (IPR020472),WD40 repeat%2C conserved site (IPR019775);NIAS_FLcDNA=J090061B07;Manual Curation=April 8%2C 2015;Literature_PMID=21585570,8665097;Oryzabase=10761;TENOR=Os03t0669200-01;KEGG=Os03t0669200-01
Chr03	irgsp1_rep	five_prime_UTR	26406314	26406492	.	-	.	Parent=Os03t0669200-01
Chr03	irgsp1_rep	CDS	26406205	26406313	.	-	0	Parent=Os03t0669200-01
Chr03	irgsp1_rep	CDS	26405982	26406076	.	-	2	Parent=Os03t0669200-01
Chr03	irgsp1_rep	CDS	26401228	26401652	.	-	0	Parent=Os03t0669200-01
Chr03	irgsp1_rep	CDS	26400256	26400619	.	-	1	Parent=Os03t0669200-01
Chr03	irgsp1_rep	CDS	26399535	26399648	.	-	0	Parent=Os03t0669200-01
Chr03	irgsp1_rep	CDS	26398981	26399016	.	-	0	Parent=Os03t0669200-01
Chr03	irgsp1_rep	three_prime_UTR	26398641	26398980	.	-	.	Parent=Os03t0669200-01
Chr03	irgsp1_rep	mRNA	26407829	26410517	.	-	.	ID=Os03t0669300-01;Name=Os03t0669300-01;Locus_id=Os03g0669300;Oryzabase Gene Symbol Synonym(s)=GLUB;Note=Beta-1%2C3-glucanase-like protein.;Transcript_evidence=AK120903 (DDBJ%2C Best hit);ORF_evidence=NP_001148381.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J023030O12;Oryzabase=23489;Expression=AK120903;TENOR=Os03t0669300-01;KEGG=Os03t0669300-01
Chr03	irgsp1_rep	five_prime_UTR	26410416	26410517	.	-	.	Parent=Os03t0669300-01
Chr03	irgsp1_rep	CDS	26410346	26410415	.	-	0	Parent=Os03t0669300-01
Chr03	irgsp1_rep	CDS	26408927	26410216	.	-	2	Parent=Os03t0669300-01
Chr03	irgsp1_rep	CDS	26408305	26408339	.	-	2	Parent=Os03t0669300-01
Chr03	irgsp1_rep	three_prime_UTR	26407829	26408304	.	-	.	Parent=Os03t0669300-01
Chr03	irgsp1_rep	mRNA	26407715	26410467	.	-	.	ID=Os03t0669300-02;Name=Os03t0669300-02;Locus_id=Os03g0669300;Oryzabase Gene Symbol Synonym(s)=GLUB;Note=Beta-1%2C3-glucanase-like protein.;Transcript_evidence=AK120399 (DDBJ%2C Best hit);ORF_evidence=NP_001148381.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J013088D17;Oryzabase=23489;Expression=AK120399;TENOR=Os03t0669300-02;KEGG=Os03t0669300-02
Chr03	irgsp1_rep	five_prime_UTR	26410416	26410467	.	-	.	Parent=Os03t0669300-02
Chr03	irgsp1_rep	CDS	26410346	26410415	.	-	0	Parent=Os03t0669300-02
Chr03	irgsp1_rep	CDS	26408927	26410216	.	-	2	Parent=Os03t0669300-02
Chr03	irgsp1_rep	CDS	26408305	26408339	.	-	2	Parent=Os03t0669300-02
Chr03	irgsp1_rep	three_prime_UTR	26407715	26408304	.	-	.	Parent=Os03t0669300-02
Chr03	irgsp1_rep	mRNA	26407747	26410465	.	-	.	ID=Os03t0669300-03;Name=Os03t0669300-03;Locus_id=Os03g0669300;Oryzabase Gene Symbol Synonym(s)=GLUB;Note=Glycoside hydrolase%2C family 17 protein.;Transcript_evidence=AK061572 (DDBJ%2C Best hit);ORF_evidence=NP_001148381.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=006-311-F12;Oryzabase=23489;Expression=AK061572;TENOR=Os03t0669300-03;KEGG=Os03t0669300-03
Chr03	irgsp1_rep	five_prime_UTR	26410416	26410465	.	-	.	Parent=Os03t0669300-03
Chr03	irgsp1_rep	CDS	26410346	26410415	.	-	0	Parent=Os03t0669300-03
Chr03	irgsp1_rep	CDS	26409795	26410216	.	-	2	Parent=Os03t0669300-03
Chr03	irgsp1_rep	CDS	26408927	26409008	.	-	0	Parent=Os03t0669300-03
Chr03	irgsp1_rep	CDS	26408305	26408339	.	-	2	Parent=Os03t0669300-03
Chr03	irgsp1_rep	three_prime_UTR	26407747	26408304	.	-	.	Parent=Os03t0669300-03
Chr03	irgsp1_rep	mRNA	26408918	26409452	.	+	.	ID=Os03t0669450-00;Name=Os03t0669450-00;Locus_id=Os03g0669450;Note=Hypothetical protein.;Transcript_evidence=BT019229 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0669450-00
Chr03	irgsp1_rep	five_prime_UTR	26408918	26408918	.	+	.	Parent=Os03t0669450-00
Chr03	irgsp1_rep	CDS	26408919	26409452	.	+	0	Parent=Os03t0669450-00
Chr03	irgsp1_rep	mRNA	26420392	26422164	.	+	.	ID=Os03t0669600-01;Name=Os03t0669600-01;Locus_id=Os03g0669600;Note=Conserved hypothetical protein.;Transcript_evidence=AK073152 (DDBJ%2C Best hit);ORF_evidence=B8AP32 (UniProt);NIAS_FLcDNA=J033011D07;Expression=AK073152;TENOR=Os03t0669600-01;KEGG=Os03t0669600-01
Chr03	irgsp1_rep	five_prime_UTR	26420392	26420577	.	+	.	Parent=Os03t0669600-01
Chr03	irgsp1_rep	CDS	26420578	26420639	.	+	0	Parent=Os03t0669600-01
Chr03	irgsp1_rep	CDS	26421588	26421795	.	+	1	Parent=Os03t0669600-01
Chr03	irgsp1_rep	three_prime_UTR	26421796	26422164	.	+	.	Parent=Os03t0669600-01
Chr03	irgsp1_rep	mRNA	26420422	26422220	.	+	.	ID=Os03t0669600-02;Name=Os03t0669600-02;Locus_id=Os03g0669600;Note=Conserved hypothetical protein.;Transcript_evidence=AK104971 (DDBJ%2C Best hit);ORF_evidence=B8AP32 (UniProt);NIAS_FLcDNA=001-121-H09;Expression=AK104971;TENOR=Os03t0669600-02;KEGG=Os03t0669600-02
Chr03	irgsp1_rep	five_prime_UTR	26420422	26420577	.	+	.	Parent=Os03t0669600-02
Chr03	irgsp1_rep	CDS	26420578	26420639	.	+	0	Parent=Os03t0669600-02
Chr03	irgsp1_rep	CDS	26421588	26421795	.	+	1	Parent=Os03t0669600-02
Chr03	irgsp1_rep	three_prime_UTR	26421796	26422220	.	+	.	Parent=Os03t0669600-02
Chr03	irgsp1_rep	mRNA	26427507	26427590	.	-	.	ID=Os03t0669700-00;Name=Os03t0669700-00;Locus_id=Os03g0669700;Note=Non-protein coding transcript.;Transcript_evidence=EU949000 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0669700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	exon	26427507	26427590	.	-	.	Parent=Os03t0669700-00
Chr03	irgsp1_rep	mRNA	26433380	26438222	.	+	.	ID=Os03t0669800-01;Name=Os03t0669800-01;Locus_id=Os03g0669800;Note=Zinc finger%2C FYVE-type domain containing protein.;Transcript_evidence=AK121639 (DDBJ%2C Best hit);ORF_evidence=Q7Y185 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515),Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C FYVE-type (IPR000306),Zinc finger%2C FYVE/PHD-type (IPR011011),Tetratricopeptide-like helical (IPR011990),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C FYVE-related (IPR017455),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J033054G22;TENOR=Os03t0669800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	26433380	26433645	.	+	.	Parent=Os03t0669800-01
Chr03	irgsp1_rep	CDS	26433646	26433670	.	+	0	Parent=Os03t0669800-01
Chr03	irgsp1_rep	CDS	26434138	26434280	.	+	2	Parent=Os03t0669800-01
Chr03	irgsp1_rep	CDS	26434796	26434964	.	+	0	Parent=Os03t0669800-01
Chr03	irgsp1_rep	CDS	26435763	26438222	.	+	2	Parent=Os03t0669800-01
Chr03	irgsp1_rep	mRNA	26425197	26442532	.	-	.	ID=Os03t0669900-00;Name=Os03t0669900-00;Locus_id=Os03g0669900;Oryzabase Gene Symbol Synonym(s)=OsFbox165%2C Os_F0229%2C OsFbox166%2C Os_F0438;Oryzabase Gene Name Synonym(s)=F-box protein 165%2C F-box protein 166;Note=Similar to F-box domain containing protein.;Transcript_evidence=tplb0002n20 (Wheat FLcDNA);ORF_evidence=Q10L74 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=16954;TENOR=Os03t0669900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	26441709	26442532	.	-	0	Parent=Os03t0669900-00
Chr03	irgsp1_rep	CDS	26425197	26425875	.	-	1	Parent=Os03t0669900-00
Chr03	irgsp1_rep	mRNA	26442731	26444288	.	+	.	ID=Os03t0670000-01;Name=Os03t0670000-01;Locus_id=Os03g0670000;Note=Domain of unknown function DUF1713%2C mitochondria domain containing protein.;Transcript_evidence=AK064735 (DDBJ%2C Best hit);ORF_evidence=Q6ASX3 (UniProt);InterPro=Domain of unknown function DUF1713%2C mitochondria (IPR013177);NIAS_FLcDNA=002-120-C07;TENOR=Os03t0670000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	26442731	26442753	.	+	.	Parent=Os03t0670000-01
Chr03	irgsp1_rep	CDS	26442754	26443131	.	+	0	Parent=Os03t0670000-01
Chr03	irgsp1_rep	three_prime_UTR	26443132	26443159	.	+	.	Parent=Os03t0670000-01
Chr03	irgsp1_rep	three_prime_UTR	26444057	26444288	.	+	.	Parent=Os03t0670000-01
Chr03	irgsp1_rep	mRNA	26442733	26443481	.	+	.	ID=Os03t0670000-02;Name=Os03t0670000-02;Locus_id=Os03g0670000;Note=Domain of unknown function DUF1713%2C mitochondria domain containing protein.;Transcript_evidence=AK063641 (DDBJ%2C Best hit);ORF_evidence=Q6ASX3 (UniProt);InterPro=Domain of unknown function DUF1713%2C mitochondria (IPR013177);NIAS_FLcDNA=001-118-G09;TENOR=Os03t0670000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	26442733	26442753	.	+	.	Parent=Os03t0670000-02
Chr03	irgsp1_rep	CDS	26442754	26443131	.	+	0	Parent=Os03t0670000-02
Chr03	irgsp1_rep	three_prime_UTR	26443132	26443481	.	+	.	Parent=Os03t0670000-02
Chr03	irgsp1_rep	mRNA	26445311	26448758	.	-	.	ID=Os03t0670100-01;Name=Os03t0670100-01;Locus_id=Os03g0670100;CGSNL Gene Symbol=ABCI9;CGSNL Gene Name=ABC TRANSPORTER I FAMILY MEMBER 9;Oryzabase Gene Symbol Synonym(s)=OsABCI9%2C OsABCI9_1%2C OsABCI9_2;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCI subgroup member 9;Note=Similar to ATP-binding protein of ABC transporter.;Transcript_evidence=AK071650 (DDBJ%2C Best hit);ORF_evidence=Q10FF0 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=J023105K03;Oryzabase=12033;Expression=AK071650;TENOR=Os03t0670100-01;KEGG=Os03t0670100-01
Chr03	irgsp1_rep	five_prime_UTR	26448679	26448758	.	-	.	Parent=Os03t0670100-01
Chr03	irgsp1_rep	CDS	26448566	26448678	.	-	0	Parent=Os03t0670100-01
Chr03	irgsp1_rep	CDS	26447965	26448061	.	-	1	Parent=Os03t0670100-01
Chr03	irgsp1_rep	CDS	26447731	26447859	.	-	0	Parent=Os03t0670100-01
Chr03	irgsp1_rep	CDS	26447224	26447319	.	-	0	Parent=Os03t0670100-01
Chr03	irgsp1_rep	CDS	26447035	26447112	.	-	0	Parent=Os03t0670100-01
Chr03	irgsp1_rep	CDS	26446874	26446935	.	-	0	Parent=Os03t0670100-01
Chr03	irgsp1_rep	CDS	26446709	26446784	.	-	1	Parent=Os03t0670100-01
Chr03	irgsp1_rep	CDS	26446321	26446428	.	-	0	Parent=Os03t0670100-01
Chr03	irgsp1_rep	CDS	26446018	26446193	.	-	0	Parent=Os03t0670100-01
Chr03	irgsp1_rep	CDS	26445850	26445934	.	-	1	Parent=Os03t0670100-01
Chr03	irgsp1_rep	CDS	26445710	26445751	.	-	0	Parent=Os03t0670100-01
Chr03	irgsp1_rep	three_prime_UTR	26445311	26445709	.	-	.	Parent=Os03t0670100-01
Chr03	irgsp1_rep	mRNA	26448864	26451465	.	+	.	ID=Os03t0670200-01;Name=Os03t0670200-01;Locus_id=Os03g0670200;Note=Similar to YJR013Wp (Fragment).;Transcript_evidence=AK069553 (DDBJ%2C Best hit);ORF_evidence=B6T639 (UniProt);GO=Biological Process: GPI anchor biosynthetic process (GO:0006506),Cellular Component: endoplasmic reticulum membrane (GO:0005789),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=Mannosyltransferase%2C DXD (IPR007704);NIAS_FLcDNA=J023020O11;Expression=AK069553;TENOR=Os03t0670200-01;KEGG=Os03t0670200-01 (EC:2.4.1.-)
Chr03	irgsp1_rep	five_prime_UTR	26448864	26448955	.	+	.	Parent=Os03t0670200-01
Chr03	irgsp1_rep	CDS	26448956	26449232	.	+	0	Parent=Os03t0670200-01
Chr03	irgsp1_rep	CDS	26449762	26449944	.	+	2	Parent=Os03t0670200-01
Chr03	irgsp1_rep	CDS	26450287	26450843	.	+	2	Parent=Os03t0670200-01
Chr03	irgsp1_rep	CDS	26450929	26451246	.	+	0	Parent=Os03t0670200-01
Chr03	irgsp1_rep	three_prime_UTR	26451247	26451465	.	+	.	Parent=Os03t0670200-01
Chr03	irgsp1_rep	mRNA	26449655	26451441	.	+	.	ID=Os03t0670200-02;Name=Os03t0670200-02;Locus_id=Os03g0670200;Note=Similar to PNT1.;Transcript_evidence=AK059472 (DDBJ%2C Best hit);ORF_evidence=B6T639 (UniProt);GO=Biological Process: GPI anchor biosynthetic process (GO:0006506),Cellular Component: endoplasmic reticulum membrane (GO:0005789),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=Mannosyltransferase%2C DXD (IPR007704);NIAS_FLcDNA=001-028-E04;Expression=AK059472;TENOR=Os03t0670200-02;KEGG=Os03t0670200-02 (EC:2.4.1.-)
Chr03	irgsp1_rep	five_prime_UTR	26449655	26449676	.	+	.	Parent=Os03t0670200-02
Chr03	irgsp1_rep	CDS	26449677	26449946	.	+	0	Parent=Os03t0670200-02
Chr03	irgsp1_rep	CDS	26450287	26450322	.	+	0	Parent=Os03t0670200-02
Chr03	irgsp1_rep	three_prime_UTR	26450323	26450843	.	+	.	Parent=Os03t0670200-02
Chr03	irgsp1_rep	three_prime_UTR	26450929	26451441	.	+	.	Parent=Os03t0670200-02
Chr03	irgsp1_rep	mRNA	26448955	26451286	.	-	.	ID=Os03t0670366-00;Name=Os03t0670366-00;Locus_id=Os03g0670366;Note=Hypothetical protein.;Transcript_evidence=tplb0049a10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0670366-00
Chr03	irgsp1_rep	five_prime_UTR	26451162	26451286	.	-	.	Parent=Os03t0670366-00
Chr03	irgsp1_rep	CDS	26450927	26451161	.	-	0	Parent=Os03t0670366-00
Chr03	irgsp1_rep	CDS	26450702	26450841	.	-	2	Parent=Os03t0670366-00
Chr03	irgsp1_rep	three_prime_UTR	26448955	26450701	.	-	.	Parent=Os03t0670366-00
Chr03	irgsp1_rep	mRNA	26460057	26461142	.	+	.	ID=Os03t0670700-01;Name=Os03t0670700-01;Locus_id=Os03g0670700;CGSNL Gene Symbol=GRP3;CGSNL Gene Name=GLYCINE-RICH RNA-BINDING PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsGRP3%2C RTP%2C RBP-152;Oryzabase Gene Name Synonym(s)=glycine-rich RNA-binding protein 3%2C ABA-inducible for glycine-rich protein%2C Retrotransposon protein%2C RNA-binding RBP-152;Note=Similar to Glycine-rich RNA-binding%2C abscisic acid-inducible protein.;Transcript_evidence=AK059164 (DDBJ%2C Best hit);ORF_evidence=Q8VXC4 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-023-D11;Oryzabase=8939;Expression=AK059164;TENOR=Os03t0670700-01;KEGG=Os03t0670700-01
Chr03	irgsp1_rep	five_prime_UTR	26460057	26460154	.	+	.	Parent=Os03t0670700-01
Chr03	irgsp1_rep	CDS	26460155	26460268	.	+	0	Parent=Os03t0670700-01
Chr03	irgsp1_rep	CDS	26460516	26460783	.	+	0	Parent=Os03t0670700-01
Chr03	irgsp1_rep	CDS	26460842	26461050	.	+	2	Parent=Os03t0670700-01
Chr03	irgsp1_rep	three_prime_UTR	26461051	26461142	.	+	.	Parent=Os03t0670700-01
Chr03	irgsp1_rep	mRNA	26460057	26461156	.	+	.	ID=Os03t0670700-02;Name=Os03t0670700-02;Locus_id=Os03g0670700;CGSNL Gene Symbol=GRP3;CGSNL Gene Name=GLYCINE-RICH RNA-BINDING PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsGRP3%2C RTP%2C RBP-152;Oryzabase Gene Name Synonym(s)=glycine-rich RNA-binding protein 3%2C ABA-inducible for glycine-rich protein%2C Retrotransposon protein%2C RNA-binding RBP-152;Note=Similar to Glycine-rich protein.;Transcript_evidence=AK070016 (DDBJ%2C Best hit);ORF_evidence=Q8VXC4 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023037K17;Oryzabase=8939;Expression=AK070016;TENOR=Os03t0670700-02;KEGG=Os03t0670700-02
Chr03	irgsp1_rep	five_prime_UTR	26460057	26460154	.	+	.	Parent=Os03t0670700-02
Chr03	irgsp1_rep	CDS	26460155	26460268	.	+	0	Parent=Os03t0670700-02
Chr03	irgsp1_rep	CDS	26460516	26460890	.	+	0	Parent=Os03t0670700-02
Chr03	irgsp1_rep	three_prime_UTR	26460891	26461156	.	+	.	Parent=Os03t0670700-02
Chr03	irgsp1_rep	mRNA	26460060	26461142	.	+	.	ID=Os03t0670700-03;Name=Os03t0670700-03;Locus_id=Os03g0670700;CGSNL Gene Symbol=GRP3;CGSNL Gene Name=GLYCINE-RICH RNA-BINDING PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsGRP3%2C RTP%2C RBP-152;Oryzabase Gene Name Synonym(s)=glycine-rich RNA-binding protein 3%2C ABA-inducible for glycine-rich protein%2C Retrotransposon protein%2C RNA-binding RBP-152;Note=Similar to Glycine rich RNA binding protein.;Transcript_evidence=AK119242 (DDBJ%2C Best hit);ORF_evidence=Q8VXC4 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-120-B02;Oryzabase=8939;Expression=AK119242;TENOR=Os03t0670700-03;KEGG=Os03t0670700-03
Chr03	irgsp1_rep	five_prime_UTR	26460060	26460154	.	+	.	Parent=Os03t0670700-03
Chr03	irgsp1_rep	CDS	26460155	26460268	.	+	0	Parent=Os03t0670700-03
Chr03	irgsp1_rep	CDS	26460516	26460665	.	+	0	Parent=Os03t0670700-03
Chr03	irgsp1_rep	CDS	26460800	26461039	.	+	0	Parent=Os03t0670700-03
Chr03	irgsp1_rep	three_prime_UTR	26461040	26461142	.	+	.	Parent=Os03t0670700-03
Chr03	irgsp1_rep	mRNA	26460060	26461127	.	+	.	ID=Os03t0670700-04;Name=Os03t0670700-04;Locus_id=Os03g0670700;CGSNL Gene Symbol=GRP3;CGSNL Gene Name=GLYCINE-RICH RNA-BINDING PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsGRP3%2C RTP%2C RBP-152;Oryzabase Gene Name Synonym(s)=glycine-rich RNA-binding protein 3%2C ABA-inducible for glycine-rich protein%2C Retrotransposon protein%2C RNA-binding RBP-152;Note=Similar to Glycine-rich protein.;Transcript_evidence=AK119238 (DDBJ%2C Best hit);ORF_evidence=Q8VXC4 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-119-H08;Oryzabase=8939;Expression=AK119238;TENOR=Os03t0670700-04;KEGG=Os03t0670700-04
Chr03	irgsp1_rep	five_prime_UTR	26460060	26460154	.	+	.	Parent=Os03t0670700-04
Chr03	irgsp1_rep	CDS	26460155	26460268	.	+	0	Parent=Os03t0670700-04
Chr03	irgsp1_rep	CDS	26460516	26460773	.	+	0	Parent=Os03t0670700-04
Chr03	irgsp1_rep	CDS	26460849	26460890	.	+	0	Parent=Os03t0670700-04
Chr03	irgsp1_rep	three_prime_UTR	26460891	26461127	.	+	.	Parent=Os03t0670700-04
Chr03	irgsp1_rep	mRNA	26462747	26463154	.	-	.	ID=Os03t0670800-00;Name=Os03t0670800-00;Locus_id=Os03g0670800;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0009g14 (Wheat FLcDNA);ORF_evidence=Q6ASX8 (UniProt);TENOR=Os03t0670800-00
Chr03	irgsp1_rep	five_prime_UTR	26463127	26463154	.	-	.	Parent=Os03t0670800-00
Chr03	irgsp1_rep	CDS	26462959	26463126	.	-	0	Parent=Os03t0670800-00
Chr03	irgsp1_rep	CDS	26462747	26462830	.	-	0	Parent=Os03t0670800-00
Chr03	irgsp1_rep	mRNA	26466125	26468970	.	+	.	ID=Os03t0671000-00;Name=Os03t0671000-00;Locus_id=Os03g0671000;Oryzabase Gene Symbol Synonym(s)=OsbHLH022;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 022;Note=Similar to Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=BT039963 (DDBJ);ORF_evidence=Q10FE3 (UniProt);Oryzabase=15313;TENOR=Os03t0671000-00;KEGG=Os03t0671000-00
Chr03	irgsp1_rep	CDS	26466125	26466889	.	+	0	Parent=Os03t0671000-00
Chr03	irgsp1_rep	three_prime_UTR	26466890	26467165	.	+	.	Parent=Os03t0671000-00
Chr03	irgsp1_rep	three_prime_UTR	26468906	26468970	.	+	.	Parent=Os03t0671000-00
Chr03	irgsp1_rep	mRNA	26505145	26509491	.	-	.	ID=Os03t0671800-01;Name=Os03t0671800-01;Locus_id=Os03g0671800;Oryzabase Gene Symbol Synonym(s)=OsbHLH020%2C bHLH020%2C bHLH20;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 020;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=AK107190 (DDBJ%2C Best hit);ORF_evidence=B8AP39 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=002-125-A03;Oryzabase=15311;Expression=AK107190;TENOR=Os03t0671800-01;KEGG=Os03t0671800-01
Chr03	irgsp1_rep	five_prime_UTR	26509458	26509491	.	-	.	Parent=Os03t0671800-01
Chr03	irgsp1_rep	CDS	26508798	26509457	.	-	0	Parent=Os03t0671800-01
Chr03	irgsp1_rep	CDS	26508327	26508722	.	-	0	Parent=Os03t0671800-01
Chr03	irgsp1_rep	CDS	26505590	26505691	.	-	0	Parent=Os03t0671800-01
Chr03	irgsp1_rep	three_prime_UTR	26505145	26505589	.	-	.	Parent=Os03t0671800-01
Chr03	irgsp1_rep	mRNA	26526743	26530676	.	-	.	ID=Os03t0672300-01;Name=Os03t0672300-01;Locus_id=Os03g0672300;Note=Similar to Pyruvate kinase.;Transcript_evidence=AK109881 (DDBJ%2C Best hit),AK103388 (DDBJ%2C Best hit);ORF_evidence=A3ALA5 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyruvate kinase activity (GO:0004743),Molecular Function: potassium ion binding (GO:0030955);InterPro=Pyruvate kinase (IPR001697),Pyruvate kinase-like%2C insert domain (IPR011037),Pyruvate kinase%2C barrel (IPR015793),Pyruvate kinase%2C alpha/beta (IPR015794),Pyruvate kinase%2C C-terminal (IPR015795),Pyruvate kinase%2C beta-barrel insert domain (IPR015806),Pyruvate/Phosphoenolpyruvate kinase (IPR015813);NIAS_FLcDNA=002-149-C12,J033127I24;TENOR=Os03t0672300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	26530603	26530676	.	-	.	Parent=Os03t0672300-01
Chr03	irgsp1_rep	CDS	26530168	26530602	.	-	0	Parent=Os03t0672300-01
Chr03	irgsp1_rep	CDS	26529129	26529216	.	-	0	Parent=Os03t0672300-01
Chr03	irgsp1_rep	CDS	26528856	26529046	.	-	2	Parent=Os03t0672300-01
Chr03	irgsp1_rep	CDS	26528385	26528503	.	-	0	Parent=Os03t0672300-01
Chr03	irgsp1_rep	CDS	26527661	26527904	.	-	1	Parent=Os03t0672300-01
Chr03	irgsp1_rep	CDS	26527291	26527525	.	-	0	Parent=Os03t0672300-01
Chr03	irgsp1_rep	CDS	26526828	26527162	.	-	2	Parent=Os03t0672300-01
Chr03	irgsp1_rep	three_prime_UTR	26526743	26526827	.	-	.	Parent=Os03t0672300-01
Chr03	irgsp1_rep	mRNA	26531313	26534354	.	-	.	ID=Os03t0672400-01;Name=Os03t0672400-01;Locus_id=Os03g0672400;Note=Conserved hypothetical protein.;Transcript_evidence=AK061599 (DDBJ%2C Best hit);ORF_evidence=A2XKI6 (UniProt);NIAS_FLcDNA=001-027-A09;Expression=AK061599;TENOR=Os03t0672400-01;KEGG=Os03t0672400-01
Chr03	irgsp1_rep	five_prime_UTR	26534183	26534354	.	-	.	Parent=Os03t0672400-01
Chr03	irgsp1_rep	CDS	26534080	26534182	.	-	0	Parent=Os03t0672400-01
Chr03	irgsp1_rep	CDS	26531812	26533940	.	-	2	Parent=Os03t0672400-01
Chr03	irgsp1_rep	CDS	26531628	26531711	.	-	0	Parent=Os03t0672400-01
Chr03	irgsp1_rep	three_prime_UTR	26531313	26531627	.	-	.	Parent=Os03t0672400-01
Chr03	irgsp1_rep	mRNA	26541774	26542496	.	-	.	ID=Os03t0672500-00;Name=Os03t0672500-00;Locus_id=Os03g0672500;Note=Hypothetical conserved gene.;Transcript_evidence=BT038138 (DDBJ);ORF_evidence=Q84R67 (UniProt);TENOR=Os03t0672500-00;KEGG=Os03t0672500-00
Chr03	irgsp1_rep	CDS	26542284	26542496	.	-	0	Parent=Os03t0672500-00
Chr03	irgsp1_rep	CDS	26541899	26542195	.	-	0	Parent=Os03t0672500-00
Chr03	irgsp1_rep	three_prime_UTR	26541774	26541898	.	-	.	Parent=Os03t0672500-00
Chr03	irgsp1_rep	mRNA	26547357	26548776	.	-	.	ID=Os03t0672700-01;Name=Os03t0672700-01;Locus_id=Os03g0672700;Note=Conserved hypothetical protein.;Transcript_evidence=AK062507 (DDBJ%2C Best hit);ORF_evidence=Q84R59 (UniProt);NIAS_FLcDNA=001-104-B09;Expression=AK062507;TENOR=Os03t0672700-01;KEGG=Os03t0672700-01
Chr03	irgsp1_rep	five_prime_UTR	26548775	26548776	.	-	.	Parent=Os03t0672700-01
Chr03	irgsp1_rep	CDS	26548538	26548774	.	-	0	Parent=Os03t0672700-01
Chr03	irgsp1_rep	CDS	26547829	26548158	.	-	0	Parent=Os03t0672700-01
Chr03	irgsp1_rep	three_prime_UTR	26547357	26547828	.	-	.	Parent=Os03t0672700-01
Chr03	irgsp1_rep	mRNA	26576580	26579053	.	+	.	ID=Os03t0672900-01;Name=Os03t0672900-01;Locus_id=Os03g0672900;RAP-DB Gene Symbol Synonym(s)=OsXYN1%2C OsXyn1;Note=Xylanase-like protein%2C Glycoside hydrolase 10 (GH10) family protein%2C Cell wall deposition%2C  Regulation of plant growth and development;Transcript_evidence=AK369547 (barley);ORF_evidence=Q84R74;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: hydrolase activity%2C acting on glycosyl bonds (GO:0016798);InterPro=Galactose-binding-like domain superfamily (IPR008979),Glycoside hydrolase superfamily (IPR017853),Carbohydrate-binding%2C CenC-like (IPR003305),Glycoside hydrolase family 10 domain (IPR001000),Glycosyl hydrolases family 10%2C active site (IPR031158);Manual Curation=April 28%2C 2020;Literature_PMID=32337581;TENOR=Os03t0672900-00;Subcellular location=plasma membrane (GO:0005886)
Chr03	irgsp1_rep	CDS	26576580	26576965	.	+	0	Parent=Os03t0672900-01
Chr03	irgsp1_rep	CDS	26577049	26577229	.	+	1	Parent=Os03t0672900-01
Chr03	irgsp1_rep	CDS	26577350	26579053	.	+	0	Parent=Os03t0672900-01
Chr03	irgsp1_rep	mRNA	26577364	26579056	.	-	.	ID=Os03t0672950-00;Name=Os03t0672950-00;Locus_id=Os03g0672950;Note=Hypothetical protein.;Transcript_evidence=tplb0048l17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0672950-00
Chr03	irgsp1_rep	CDS	26577364	26579056	.	-	0	Parent=Os03t0672950-00
Chr03	irgsp1_rep	mRNA	26581781	26582090	.	-	.	ID=Os03t0673000-00;Name=Os03t0673000-00;Locus_id=Os03g0673000;CGSNL Gene Symbol=OSH10;CGSNL Gene Name=HOMEOBOX 10;Oryzabase Gene Symbol Synonym(s)=OsH10%2C H10%2C HB412;Oryzabase Gene Name Synonym(s)=Oryza sativa homeobox10%2C Homeobox protein knotted-1-like 4%2C Homeobox protein OSH10%2C Rice KNOX gene-10;Note=Similar to Knotted1-type homeobox protein OSH10 (Fragment).;Transcript_evidence=AB028886 (DDBJ%2C Best hit);ORF_evidence=Q75LX7 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),ELK (IPR005539),Homeobox KN domain (IPR008422),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);Oryzabase=2978;Expression=AB028886;TENOR=Os03t0673000-00;KEGG=Os03t0673000-00
Chr03	irgsp1_rep	CDS	26581935	26582090	.	-	0	Parent=Os03t0673000-00
Chr03	irgsp1_rep	CDS	26581781	26581855	.	-	0	Parent=Os03t0673000-00
Chr03	irgsp1_rep	mRNA	26602176	26602704	.	+	.	ID=Os03t0673400-01;Name=Os03t0673400-01;Locus_id=Os03g0673400;Note=Conserved hypothetical protein.;Transcript_evidence=AK243310 (DDBJ%2C Best hit);ORF_evidence=NP_001173580.1 (RefSeq);NIAS_FLcDNA=J100055J09;TENOR=Os03t0673400-01;KEGG=Os03t0673400-01
Chr03	irgsp1_rep	five_prime_UTR	26602176	26602298	.	+	.	Parent=Os03t0673400-01
Chr03	irgsp1_rep	CDS	26602299	26602541	.	+	0	Parent=Os03t0673400-01
Chr03	irgsp1_rep	three_prime_UTR	26602542	26602704	.	+	.	Parent=Os03t0673400-01
Chr03	irgsp1_rep	mRNA	26605077	26610235	.	-	.	ID=Os03t0673500-00;Name=Os03t0673500-00;Locus_id=Os03g0673500;Note=Similar to Homeobox protein knotted-1-like 4.;Transcript_evidence=BT040622 (DDBJ);ORF_evidence=Q75LX7 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),ELK (IPR005539),KNOX1 (IPR005540),KNOX2 (IPR005541),Homeobox KN domain (IPR008422),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Homeobox%2C conserved site (IPR017970);TENOR=Os03t0673500-00;KEGG=Os03t0673500-00
Chr03	irgsp1_rep	CDS	26609957	26610235	.	-	0	Parent=Os03t0673500-00
Chr03	irgsp1_rep	CDS	26609704	26609835	.	-	0	Parent=Os03t0673500-00
Chr03	irgsp1_rep	CDS	26609003	26609135	.	-	0	Parent=Os03t0673500-00
Chr03	irgsp1_rep	CDS	26605461	26605711	.	-	2	Parent=Os03t0673500-00
Chr03	irgsp1_rep	CDS	26605081	26605320	.	-	0	Parent=Os03t0673500-00
Chr03	irgsp1_rep	three_prime_UTR	26605077	26605080	.	-	.	Parent=Os03t0673500-00
Chr03	irgsp1_rep	mRNA	26617086	26618211	.	-	.	ID=Os03t0673600-01;Name=Os03t0673600-01;Locus_id=Os03g0673600;Oryzabase Gene Symbol Synonym(s)=OsSTA109;Note=Conserved hypothetical protein.;Transcript_evidence=AK068539 (DDBJ%2C Best hit),AK062334 (DDBJ%2C Best hit);ORF_evidence=B8B1Q5 (UniProt);NIAS_FLcDNA=J013151E13,001-101-E02;Oryzabase=19400;TENOR=Os03t0673600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	26618109	26618211	.	-	.	Parent=Os03t0673600-01
Chr03	irgsp1_rep	CDS	26617776	26618108	.	-	0	Parent=Os03t0673600-01
Chr03	irgsp1_rep	three_prime_UTR	26617086	26617775	.	-	.	Parent=Os03t0673600-01
Chr03	irgsp1_rep	mRNA	26622941	26623429	.	+	.	ID=Os03t0673700-01;Name=Os03t0673700-01;Locus_id=Os03g0673700;Note=Similar to predicted protein.;Transcript_evidence=AK062990 (DDBJ%2C Best hit);ORF_evidence=B8AP46 (UniProt);NIAS_FLcDNA=001-109-G01;Expression=AK062990;TENOR=Os03t0673700-01;KEGG=Os03t0673700-01
Chr03	irgsp1_rep	five_prime_UTR	26622941	26623043	.	+	.	Parent=Os03t0673700-01
Chr03	irgsp1_rep	CDS	26623044	26623247	.	+	0	Parent=Os03t0673700-01
Chr03	irgsp1_rep	three_prime_UTR	26623248	26623429	.	+	.	Parent=Os03t0673700-01
Chr03	irgsp1_rep	mRNA	26623621	26632189	.	-	.	ID=Os03t0673800-01;Name=Os03t0673800-01;Locus_id=Os03g0673800;CGSNL Gene Symbol=OSCA2.2;CGSNL Gene Name=HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 2.2;Oryzabase Gene Symbol Synonym(s)=OsOSCA2.2%2C OsIOSCA2.2%2C OsDDP3%2C DDP3%2C OsDDP3.1%2C OsDDP3.2;Oryzabase Gene Name Synonym(s)=Hyperosmolality-gated calcium-permeable channel 2.2%2C DUF221 Domain containing Protein 3;Note=Conserved hypothetical protein.;Transcript_evidence=AK103691 (DDBJ%2C Best hit);ORF_evidence=Q75LY2 (UniProt);NIAS_FLcDNA=J033136H09;Oryzabase=19655;TENOR=Os03t0673800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	26631999	26632189	.	-	.	Parent=Os03t0673800-01
Chr03	irgsp1_rep	five_prime_UTR	26631833	26631894	.	-	.	Parent=Os03t0673800-01
Chr03	irgsp1_rep	five_prime_UTR	26629836	26629884	.	-	.	Parent=Os03t0673800-01
Chr03	irgsp1_rep	CDS	26629443	26629835	.	-	0	Parent=Os03t0673800-01
Chr03	irgsp1_rep	three_prime_UTR	26628587	26629442	.	-	.	Parent=Os03t0673800-01
Chr03	irgsp1_rep	three_prime_UTR	26628266	26628475	.	-	.	Parent=Os03t0673800-01
Chr03	irgsp1_rep	three_prime_UTR	26626724	26626918	.	-	.	Parent=Os03t0673800-01
Chr03	irgsp1_rep	three_prime_UTR	26626342	26626640	.	-	.	Parent=Os03t0673800-01
Chr03	irgsp1_rep	three_prime_UTR	26625408	26625684	.	-	.	Parent=Os03t0673800-01
Chr03	irgsp1_rep	three_prime_UTR	26624997	26625272	.	-	.	Parent=Os03t0673800-01
Chr03	irgsp1_rep	three_prime_UTR	26624415	26624648	.	-	.	Parent=Os03t0673800-01
Chr03	irgsp1_rep	three_prime_UTR	26623621	26624215	.	-	.	Parent=Os03t0673800-01
Chr03	irgsp1_rep	mRNA	26623617	26625642	.	-	.	ID=Os03t0673800-02;Name=Os03t0673800-02;Locus_id=Os03g0673800;CGSNL Gene Symbol=OSCA2.2;CGSNL Gene Name=HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 2.2;Oryzabase Gene Symbol Synonym(s)=OsOSCA2.2%2C OsIOSCA2.2%2C OsDDP3%2C DDP3%2C OsDDP3.1%2C OsDDP3.2;Oryzabase Gene Name Synonym(s)=Hyperosmolality-gated calcium-permeable channel 2.2%2C DUF221 Domain containing Protein 3;Note=Similar to predicted protein.;Transcript_evidence=AK061864 (DDBJ%2C Best hit);ORF_evidence=NP_001154436.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Domain of unknown function DUF221 (IPR003864);NIAS_FLcDNA=001-040-H05;Oryzabase=19655;Expression=AK061864;TENOR=Os03t0673800-02;KEGG=Os03t0673800-02
Chr03	irgsp1_rep	five_prime_UTR	26625642	26625642	.	-	.	Parent=Os03t0673800-02
Chr03	irgsp1_rep	CDS	26625408	26625641	.	-	0	Parent=Os03t0673800-02
Chr03	irgsp1_rep	CDS	26624997	26625272	.	-	0	Parent=Os03t0673800-02
Chr03	irgsp1_rep	CDS	26624415	26624648	.	-	0	Parent=Os03t0673800-02
Chr03	irgsp1_rep	CDS	26623865	26624215	.	-	0	Parent=Os03t0673800-02
Chr03	irgsp1_rep	three_prime_UTR	26623617	26623864	.	-	.	Parent=Os03t0673800-02
Chr03	irgsp1_rep	mRNA	26623812	26629836	.	+	.	ID=Os03t0673900-00;Name=Os03t0673900-00;Locus_id=Os03g0673900;Note=Hypothetical protein.;Transcript_evidence=tplb0021b12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0673900-00
Chr03	irgsp1_rep	five_prime_UTR	26623812	26624203	.	+	.	Parent=Os03t0673900-00
Chr03	irgsp1_rep	five_prime_UTR	26624399	26624648	.	+	.	Parent=Os03t0673900-00
Chr03	irgsp1_rep	five_prime_UTR	26624997	26625258	.	+	.	Parent=Os03t0673900-00
Chr03	irgsp1_rep	five_prime_UTR	26625392	26625396	.	+	.	Parent=Os03t0673900-00
Chr03	irgsp1_rep	CDS	26625397	26625677	.	+	0	Parent=Os03t0673900-00
Chr03	irgsp1_rep	CDS	26626333	26626411	.	+	1	Parent=Os03t0673900-00
Chr03	irgsp1_rep	three_prime_UTR	26626412	26626643	.	+	.	Parent=Os03t0673900-00
Chr03	irgsp1_rep	three_prime_UTR	26626728	26626916	.	+	.	Parent=Os03t0673900-00
Chr03	irgsp1_rep	three_prime_UTR	26628256	26628519	.	+	.	Parent=Os03t0673900-00
Chr03	irgsp1_rep	three_prime_UTR	26628887	26629047	.	+	.	Parent=Os03t0673900-00
Chr03	irgsp1_rep	three_prime_UTR	26629555	26629836	.	+	.	Parent=Os03t0673900-00
Chr03	irgsp1_rep	mRNA	26654438	26657843	.	+	.	ID=Os03t0674300-01;Name=Os03t0674300-01;Locus_id=Os03g0674300;Oryzabase Gene Symbol Synonym(s)=OsCBSDUF2;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSDUF2%2C CBS domain containing protein OsCBSDUF2;Note=Similar to PGPS/D5 (Fragment).;Transcript_evidence=AK063948 (DDBJ%2C Best hit);ORF_evidence=B6TF42 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Cystathionine beta-synthase%2C core (IPR000644);NIAS_FLcDNA=001-123-F02;Oryzabase=10343;Expression=AK063948;TENOR=Os03t0674300-01;KEGG=Os03t0674300-01
Chr03	irgsp1_rep	five_prime_UTR	26654438	26654439	.	+	.	Parent=Os03t0674300-01
Chr03	irgsp1_rep	CDS	26654440	26654511	.	+	0	Parent=Os03t0674300-01
Chr03	irgsp1_rep	CDS	26655366	26655439	.	+	0	Parent=Os03t0674300-01
Chr03	irgsp1_rep	CDS	26655972	26656105	.	+	1	Parent=Os03t0674300-01
Chr03	irgsp1_rep	CDS	26656220	26656461	.	+	2	Parent=Os03t0674300-01
Chr03	irgsp1_rep	CDS	26656757	26656801	.	+	0	Parent=Os03t0674300-01
Chr03	irgsp1_rep	three_prime_UTR	26656802	26657843	.	+	.	Parent=Os03t0674300-01
Chr03	irgsp1_rep	mRNA	26679039	26683370	.	-	.	ID=Os03t0674600-01;Name=Os03t0674600-01;Locus_id=Os03g0674600;Note=Similar to Growth regulating factor (Fragment).;Transcript_evidence=AK067566 (DDBJ%2C Best hit);ORF_evidence=B3U2C2 (UniProt);NIAS_FLcDNA=J013113M08;TENOR=Os03t0674600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	26681002	26683370	.	-	.	Parent=Os03t0674600-01
Chr03	irgsp1_rep	CDS	26680729	26681001	.	-	0	Parent=Os03t0674600-01
Chr03	irgsp1_rep	three_prime_UTR	26680696	26680728	.	-	.	Parent=Os03t0674600-01
Chr03	irgsp1_rep	three_prime_UTR	26679039	26679796	.	-	.	Parent=Os03t0674600-01
Chr03	irgsp1_rep	mRNA	26679255	26682044	.	+	.	ID=Os03t0674700-01;Name=Os03t0674700-01;Locus_id=Os03g0674700;CGSNL Gene Symbol=GRF9;CGSNL Gene Name=GROWTH-REGULATING FACTOR 9;Oryzabase Gene Symbol Synonym(s)=OsGRF9;Oryzabase Gene Name Synonym(s)=growth-regulating factor9;Note=Similar to Growth-regulating factor 3.;Transcript_evidence=AK058659 (DDBJ%2C Best hit);ORF_evidence=F1DJY8 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides (GO:0016818);InterPro=WRC (IPR014977),Glutamine-Leucine-Glutamine%2C QLQ (IPR014978);NIAS_FLcDNA=001-018-F11;Oryzabase=10283;Expression=AK058659;TENOR=Os03t0674700-01;KEGG=Os03t0674700-01
Chr03	irgsp1_rep	five_prime_UTR	26679255	26679424	.	+	.	Parent=Os03t0674700-01
Chr03	irgsp1_rep	CDS	26679425	26679641	.	+	0	Parent=Os03t0674700-01
Chr03	irgsp1_rep	CDS	26680094	26680282	.	+	2	Parent=Os03t0674700-01
Chr03	irgsp1_rep	CDS	26680710	26681025	.	+	2	Parent=Os03t0674700-01
Chr03	irgsp1_rep	CDS	26681322	26681880	.	+	1	Parent=Os03t0674700-01
Chr03	irgsp1_rep	three_prime_UTR	26681881	26682044	.	+	.	Parent=Os03t0674700-01
Chr03	irgsp1_rep	mRNA	26691176	26691905	.	+	.	ID=Os03t0674900-00;Name=Os03t0674900-00;Locus_id=Os03g0674900;Note=Hypothetical conserved gene.;Transcript_evidence=CT835165 (DDBJ%2C Best hit);ORF_evidence=Q10FA7 (UniProt);TENOR=Os03t0674900-00;KEGG=Os03t0674900-00
Chr03	irgsp1_rep	five_prime_UTR	26691176	26691273	.	+	.	Parent=Os03t0674900-00
Chr03	irgsp1_rep	CDS	26691274	26691732	.	+	0	Parent=Os03t0674900-00
Chr03	irgsp1_rep	three_prime_UTR	26691733	26691905	.	+	.	Parent=Os03t0674900-00
Chr03	irgsp1_rep	mRNA	26694745	26695220	.	-	.	ID=Os03t0675000-01;Name=Os03t0675000-01;Locus_id=Os03g0675000;Note=Conserved hypothetical protein.;Transcript_evidence=AK063092 (DDBJ%2C Best hit);ORF_evidence=Q9FRG4 (UniProt);NIAS_FLcDNA=001-111-B03;Expression=AK063092;TENOR=Os03t0675000-01;KEGG=Os03t0675000-01
Chr03	irgsp1_rep	five_prime_UTR	26695219	26695220	.	-	.	Parent=Os03t0675000-01
Chr03	irgsp1_rep	CDS	26694880	26695218	.	-	0	Parent=Os03t0675000-01
Chr03	irgsp1_rep	three_prime_UTR	26694745	26694879	.	-	.	Parent=Os03t0675000-01
Chr03	irgsp1_rep	mRNA	26706309	26707932	.	-	.	ID=Os03t0675300-01;Name=Os03t0675300-01;Locus_id=Os03g0675300;Note=Hypothetical conserved gene.;Transcript_evidence=AK106417 (DDBJ%2C Best hit);ORF_evidence=A2XKK6 (UniProt);NIAS_FLcDNA=002-103-A07;Expression=AK106417;TENOR=Os03t0675300-01;KEGG=Os03t0675300-01
Chr03	irgsp1_rep	five_prime_UTR	26707758	26707932	.	-	.	Parent=Os03t0675300-01
Chr03	irgsp1_rep	CDS	26707113	26707757	.	-	0	Parent=Os03t0675300-01
Chr03	irgsp1_rep	three_prime_UTR	26706309	26707112	.	-	.	Parent=Os03t0675300-01
Chr03	irgsp1_rep	mRNA	26722044	26722627	.	-	.	ID=Os03t0675500-00;Name=Os03t0675500-00;Locus_id=Os03g0675500;Note=Hypothetical conserved gene.;Transcript_evidence=FP096913 (DDBJ);ORF_evidence=Q9FRG1 (UniProt);TENOR=Os03t0675500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	26722253	26722627	.	-	0	Parent=Os03t0675500-00
Chr03	irgsp1_rep	three_prime_UTR	26722044	26722252	.	-	.	Parent=Os03t0675500-00
Chr03	irgsp1_rep	mRNA	26730963	26731809	.	+	.	ID=Os03t0675600-01;Name=Os03t0675600-01;Locus_id=Os03g0675600;CGSNL Gene Symbol=PSK5;CGSNL Gene Name=PHYTOSULFOKINE 5;Oryzabase Gene Symbol Synonym(s)=OsPSK5;Oryzabase Gene Name Synonym(s)=phytosulfokine 5;Note=Similar to Phytosulfokines 3 precursor.;Transcript_evidence=AK062614 (DDBJ%2C Best hit);ORF_evidence=Q9FRF9 (UniProt);GO=Biological Process: cell proliferation (GO:0008283),Cellular Component: extracellular region (GO:0005576),Molecular Function: growth factor activity (GO:0008083);InterPro=Phytosulfokine (IPR009438);NIAS_FLcDNA=001-105-B01;Oryzabase=14421;Expression=AK062614;TENOR=Os03t0675600-01;KEGG=Os03t0675600-01
Chr03	irgsp1_rep	five_prime_UTR	26730963	26731014	.	+	.	Parent=Os03t0675600-01
Chr03	irgsp1_rep	CDS	26731015	26731122	.	+	0	Parent=Os03t0675600-01
Chr03	irgsp1_rep	CDS	26731304	26731423	.	+	0	Parent=Os03t0675600-01
Chr03	irgsp1_rep	three_prime_UTR	26731424	26731809	.	+	.	Parent=Os03t0675600-01
Chr03	irgsp1_rep	mRNA	26733986	26736205	.	+	.	ID=Os03t0675700-01;Name=Os03t0675700-01;Locus_id=Os03g0675700;Note=Conserved hypothetical protein.;Transcript_evidence=AK243583 (DDBJ%2C Best hit);ORF_evidence=NP_001050887.2 (RefSeq);NIAS_FLcDNA=J100082O04;TENOR=Os03t0675700-01;KEGG=Os03t0675700-01
Chr03	irgsp1_rep	five_prime_UTR	26733986	26733987	.	+	.	Parent=Os03t0675700-01
Chr03	irgsp1_rep	CDS	26733988	26734109	.	+	0	Parent=Os03t0675700-01
Chr03	irgsp1_rep	CDS	26735770	26735887	.	+	1	Parent=Os03t0675700-01
Chr03	irgsp1_rep	three_prime_UTR	26735888	26736205	.	+	.	Parent=Os03t0675700-01
Chr03	irgsp1_rep	mRNA	26740436	26741188	.	+	.	ID=Os03t0676100-00;Name=Os03t0676100-00;Locus_id=Os03g0676100;Note=Uncharacterised protein family UPF0310 domain containing protein.;Transcript_evidence=EU964524 (DDBJ);ORF_evidence=NP_001050888.2 (RefSeq);InterPro=EVE domain (IPR002740),PUA-like domain (IPR015947);TENOR=Os03t0676100-00;KEGG=Os03t0676100-00
Chr03	irgsp1_rep	CDS	26740436	26741188	.	+	0	Parent=Os03t0676100-00
Chr03	irgsp1_rep	mRNA	26746815	26747658	.	+	.	ID=Os03t0676300-01;Name=Os03t0676300-01;Locus_id=Os03g0676300;Note=Similar to cold shock protein-1.;Transcript_evidence=AK108103 (DDBJ%2C Best hit);ORF_evidence=NP_001149736.1 (RefSeq);NIAS_FLcDNA=002-139-B03;Expression=AK108103;TENOR=Os03t0676300-01;KEGG=Os03t0676300-01
Chr03	irgsp1_rep	five_prime_UTR	26746815	26746845	.	+	.	Parent=Os03t0676300-01
Chr03	irgsp1_rep	CDS	26746846	26747340	.	+	0	Parent=Os03t0676300-01
Chr03	irgsp1_rep	three_prime_UTR	26747341	26747658	.	+	.	Parent=Os03t0676300-01
Chr03	irgsp1_rep	mRNA	26752033	26752699	.	-	.	ID=Os03t0676400-01;Name=Os03t0676400-01;Locus_id=Os03g0676400;CGSNL Gene Symbol=VQ13;CGSNL Gene Name=VQ-MOTIF-CONTAINING PROTEIN 13;Oryzabase Gene Symbol Synonym(s)=OsVQ13;Oryzabase Gene Name Synonym(s)=VQ motif-containing protein 13%2C valine-glutamine-motif-containing protein 13;Note=VQ domain containing protein.;Transcript_evidence=AK109228 (DDBJ%2C Best hit);ORF_evidence=A2XKL7 (UniProt);InterPro=VQ (IPR008889);NIAS_FLcDNA=002-156-E12;Oryzabase=13629;Expression=AK109228;TENOR=Os03t0676400-01;KEGG=Os03t0676400-01
Chr03	irgsp1_rep	five_prime_UTR	26752616	26752699	.	-	.	Parent=Os03t0676400-01
Chr03	irgsp1_rep	CDS	26752184	26752615	.	-	0	Parent=Os03t0676400-01
Chr03	irgsp1_rep	three_prime_UTR	26752033	26752183	.	-	.	Parent=Os03t0676400-01
Chr03	irgsp1_rep	mRNA	26755878	26756258	.	+	.	ID=Os03t0676866-00;Name=Os03t0676866-00;Locus_id=Os03g0676866;Note=Non-protein coding transcript.;Transcript_evidence=EU944584 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0676866-00
Chr03	irgsp1_rep	exon	26755878	26756258	.	+	.	Parent=Os03t0676866-00
Chr03	irgsp1_rep	mRNA	26784463	26788834	.	-	.	ID=Os03t0677101-00;Name=Os03t0677101-00;Locus_id=Os03g0677101;Note=Similar to F-box domain containing protein.;Transcript_evidence=tplb0009f23 (Wheat FLcDNA);ORF_evidence=Q53K61 (UniProt);TENOR=Os03t0677101-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	26788554	26788834	.	-	0	Parent=Os03t0677101-00
Chr03	irgsp1_rep	CDS	26784638	26784800	.	-	1	Parent=Os03t0677101-00
Chr03	irgsp1_rep	three_prime_UTR	26784463	26784637	.	-	.	Parent=Os03t0677101-00
Chr03	irgsp1_rep	mRNA	26797276	26797921	.	-	.	ID=Os03t0677475-00;Name=Os03t0677475-00;Locus_id=Os03g0677475;Note=Conserved hypothetical protein.;Transcript_evidence=FP097825 (DDBJ);ORF_evidence=Q6ZDE7 (UniProt);TENOR=Os03t0677475-00
Chr03	irgsp1_rep	five_prime_UTR	26797835	26797921	.	-	.	Parent=Os03t0677475-00
Chr03	irgsp1_rep	CDS	26797658	26797834	.	-	0	Parent=Os03t0677475-00
Chr03	irgsp1_rep	three_prime_UTR	26797276	26797657	.	-	.	Parent=Os03t0677475-00
Chr03	irgsp1_rep	mRNA	26831934	26832408	.	+	.	ID=Os03t0678100-00;Name=Os03t0678100-00;Locus_id=Os03g0678100;Note=Non-protein coding transcript.;Transcript_evidence=CT835224 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os03t0678100-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	exon	26831934	26832408	.	+	.	Parent=Os03t0678100-00
Chr03	irgsp1_rep	mRNA	26863036	26864940	.	+	.	ID=Os03t0678400-01;Name=Os03t0678400-01;Locus_id=Os03g0678400;CGSNL Gene Symbol=RDCP4;CGSNL Gene Name=RING DOMAIN-CONTAINING PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OsRDCP4;Oryzabase Gene Name Synonym(s)=RING domain-containing protein 4;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK068558 (DDBJ%2C Best hit);ORF_evidence=B4FM66 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J013153F20;Oryzabase=9452;Expression=AK068558;TENOR=Os03t0678400-01;KEGG=Os03t0678400-01 (EC:6.3.2.19)
Chr03	irgsp1_rep	five_prime_UTR	26863036	26863916	.	+	.	Parent=Os03t0678400-01
Chr03	irgsp1_rep	CDS	26863917	26864618	.	+	0	Parent=Os03t0678400-01
Chr03	irgsp1_rep	three_prime_UTR	26864619	26864940	.	+	.	Parent=Os03t0678400-01
Chr03	irgsp1_rep	mRNA	26878159	26879403	.	+	.	ID=Os03t0678800-01;Name=Os03t0678800-01;Locus_id=Os03g0678800;RAP-DB Gene Symbol Synonym(s)=OsGATL2;RAP-DB Gene Name Synonym(s)=galacturonosyltransferase-like 2;CGSNL Gene Symbol=GATL2;CGSNL Gene Name=GALACTURONOSYLTRANSFERASE-LIKE 2;Oryzabase Gene Symbol Synonym(s)=OsGATL2;Oryzabase Gene Name Synonym(s)=galacturonosyltransferase-like 2;Note=Galacturonosyltransferase-like protein%2C Glycosyltransferase family 8 (GT8) protein%2C Salt and cold stress response;Transcript_evidence=EU963249 (maize);ORF_evidence=Q10F74;GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Nucleotide-diphospho-sugar transferases (IPR029044),Glycosyl transferase%2C family 8 (IPR002495);Manual Curation=March 12%2C 2020;Literature_PMID=31096659;Oryzabase=23245;TENOR=Os03t0678800-00;KEGG=Os03t0678800-00
Chr03	irgsp1_rep	CDS	26878159	26879241	.	+	0	Parent=Os03t0678800-01
Chr03	irgsp1_rep	three_prime_UTR	26879242	26879403	.	+	.	Parent=Os03t0678800-01
Chr03	irgsp1_rep	mRNA	26884255	26885376	.	+	.	ID=Os03t0678950-00;Name=Os03t0678950-00;Locus_id=Os03g0678950;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FAK0 (UniProt);TENOR=Os03t0678950-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	26884255	26884465	.	+	0	Parent=Os03t0678950-00
Chr03	irgsp1_rep	CDS	26884639	26885084	.	+	2	Parent=Os03t0678950-00
Chr03	irgsp1_rep	CDS	26885200	26885260	.	+	0	Parent=Os03t0678950-00
Chr03	irgsp1_rep	CDS	26885354	26885376	.	+	2	Parent=Os03t0678950-00
Chr03	irgsp1_rep	mRNA	26885838	26888287	.	-	.	ID=Os03t0679000-01;Name=Os03t0679000-01;Locus_id=Os03g0679000;Note=Vacuolar import and degradation protein Vid24 domain containing protein.;Transcript_evidence=AK059913 (DDBJ%2C Best hit);ORF_evidence=B6TB48 (UniProt);InterPro=Vacuolar import/degradation protein Vid24 (IPR018618);NIAS_FLcDNA=006-209-D10;Expression=AK059913;TENOR=Os03t0679000-01;KEGG=Os03t0679000-01
Chr03	irgsp1_rep	five_prime_UTR	26887901	26888287	.	-	.	Parent=Os03t0679000-01
Chr03	irgsp1_rep	CDS	26887849	26887900	.	-	0	Parent=Os03t0679000-01
Chr03	irgsp1_rep	CDS	26887304	26887365	.	-	2	Parent=Os03t0679000-01
Chr03	irgsp1_rep	CDS	26887061	26887204	.	-	0	Parent=Os03t0679000-01
Chr03	irgsp1_rep	CDS	26886752	26886825	.	-	0	Parent=Os03t0679000-01
Chr03	irgsp1_rep	CDS	26886569	26886623	.	-	1	Parent=Os03t0679000-01
Chr03	irgsp1_rep	CDS	26886429	26886491	.	-	0	Parent=Os03t0679000-01
Chr03	irgsp1_rep	CDS	26886211	26886338	.	-	0	Parent=Os03t0679000-01
Chr03	irgsp1_rep	CDS	26886032	26886110	.	-	1	Parent=Os03t0679000-01
Chr03	irgsp1_rep	three_prime_UTR	26885838	26886031	.	-	.	Parent=Os03t0679000-01
Chr03	irgsp1_rep	mRNA	26894662	26898506	.	-	.	ID=Os03t0679100-01;Name=Os03t0679100-01;Locus_id=Os03g0679100;Note=Vacuolar protein sorting-associated protein 26 family protein.;Transcript_evidence=AK241428 (DDBJ%2C Best hit);ORF_evidence=B6UEZ8 (UniProt);GO=Biological Process: vacuolar transport (GO:0007034),Cellular Component: retromer complex (GO:0030904);InterPro=Vacuolar protein sorting-associated protein 26 (IPR005377);NIAS_FLcDNA=J065161N06;TENOR=Os03t0679100-01;KEGG=Os03t0679100-01
Chr03	irgsp1_rep	five_prime_UTR	26898060	26898506	.	-	.	Parent=Os03t0679100-01
Chr03	irgsp1_rep	five_prime_UTR	26896400	26896416	.	-	.	Parent=Os03t0679100-01
Chr03	irgsp1_rep	CDS	26896358	26896399	.	-	0	Parent=Os03t0679100-01
Chr03	irgsp1_rep	CDS	26896200	26896272	.	-	0	Parent=Os03t0679100-01
Chr03	irgsp1_rep	CDS	26895763	26895824	.	-	2	Parent=Os03t0679100-01
Chr03	irgsp1_rep	three_prime_UTR	26895727	26895762	.	-	.	Parent=Os03t0679100-01
Chr03	irgsp1_rep	three_prime_UTR	26894662	26895459	.	-	.	Parent=Os03t0679100-01
Chr03	irgsp1_rep	mRNA	26901326	26924630	.	-	.	ID=Os03t0679300-01;Name=Os03t0679300-01;Locus_id=Os03g0679300;Note=Similar to Ubiquitin-conjugating enzyme family protein%2C expressed.;Transcript_evidence=AK102311 (DDBJ%2C Best hit);ORF_evidence=Q10F67 (UniProt);NIAS_FLcDNA=J033090D11;TENOR=Os03t0679300-01;B5toI1=Exon-intron structures and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	26924472	26924630	.	-	.	Parent=Os03t0679300-01
Chr03	irgsp1_rep	CDS	26924315	26924471	.	-	0	Parent=Os03t0679300-01
Chr03	irgsp1_rep	CDS	26922523	26922612	.	-	2	Parent=Os03t0679300-01
Chr03	irgsp1_rep	CDS	26921310	26921544	.	-	2	Parent=Os03t0679300-01
Chr03	irgsp1_rep	CDS	26921200	26921218	.	-	1	Parent=Os03t0679300-01
Chr03	irgsp1_rep	three_prime_UTR	26921155	26921199	.	-	.	Parent=Os03t0679300-01
Chr03	irgsp1_rep	three_prime_UTR	26920363	26920501	.	-	.	Parent=Os03t0679300-01
Chr03	irgsp1_rep	three_prime_UTR	26918478	26918584	.	-	.	Parent=Os03t0679300-01
Chr03	irgsp1_rep	three_prime_UTR	26918021	26918381	.	-	.	Parent=Os03t0679300-01
Chr03	irgsp1_rep	three_prime_UTR	26917549	26917690	.	-	.	Parent=Os03t0679300-01
Chr03	irgsp1_rep	three_prime_UTR	26916839	26916951	.	-	.	Parent=Os03t0679300-01
Chr03	irgsp1_rep	three_prime_UTR	26901326	26903839	.	-	.	Parent=Os03t0679300-01
Chr03	irgsp1_rep	mRNA	26952053	26957732	.	+	.	ID=Os03t0679700-01;Name=Os03t0679700-01;Locus_id=Os03g0679700;Oryzabase Gene Symbol Synonym(s)=OsTHIC%2C THIC;Oryzabase Gene Name Synonym(s)=HMP-P synthase;Note=Similar to Thiamine biosynthesis protein thiC.;Transcript_evidence=AK064949 (DDBJ%2C Best hit);ORF_evidence=B6U4S7 (UniProt);GO=Biological Process: thiamine biosynthetic process (GO:0009228);InterPro=Thiamine biosynthesis protein ThiC (IPR002817);NIAS_FLcDNA=J013000P20;Oryzabase=20998;Expression=AK064949;TENOR=Os03t0679700-01;KEGG=Os03t0679700-01
Chr03	irgsp1_rep	five_prime_UTR	26952053	26952147	.	+	.	Parent=Os03t0679700-01
Chr03	irgsp1_rep	five_prime_UTR	26953254	26953256	.	+	.	Parent=Os03t0679700-01
Chr03	irgsp1_rep	CDS	26953257	26953543	.	+	0	Parent=Os03t0679700-01
Chr03	irgsp1_rep	CDS	26953652	26953782	.	+	1	Parent=Os03t0679700-01
Chr03	irgsp1_rep	CDS	26954407	26955233	.	+	2	Parent=Os03t0679700-01
Chr03	irgsp1_rep	CDS	26956053	26956727	.	+	0	Parent=Os03t0679700-01
Chr03	irgsp1_rep	three_prime_UTR	26956728	26956728	.	+	.	Parent=Os03t0679700-01
Chr03	irgsp1_rep	three_prime_UTR	26957525	26957732	.	+	.	Parent=Os03t0679700-01
Chr03	irgsp1_rep	mRNA	26952053	26958978	.	+	.	ID=Os03t0679700-02;Name=Os03t0679700-02;Locus_id=Os03g0679700;Oryzabase Gene Symbol Synonym(s)=OsTHIC%2C THIC;Oryzabase Gene Name Synonym(s)=HMP-P synthase;Note=Similar to Thiamine biosynthesis protein thiC.;Transcript_evidence=AK065235 (DDBJ%2C Best hit),AK068703 (DDBJ%2C Best hit);ORF_evidence=B6U4S7 (UniProt);GO=Biological Process: thiamine biosynthetic process (GO:0009228);InterPro=Thiamine biosynthesis protein ThiC (IPR002817);NIAS_FLcDNA=J013002H20,J013159A12;Oryzabase=20998;TENOR=Os03t0679700-02
Chr03	irgsp1_rep	five_prime_UTR	26952053	26952147	.	+	.	Parent=Os03t0679700-02
Chr03	irgsp1_rep	five_prime_UTR	26953254	26953256	.	+	.	Parent=Os03t0679700-02
Chr03	irgsp1_rep	CDS	26953257	26953543	.	+	0	Parent=Os03t0679700-02
Chr03	irgsp1_rep	CDS	26953652	26953782	.	+	1	Parent=Os03t0679700-02
Chr03	irgsp1_rep	CDS	26954407	26955233	.	+	2	Parent=Os03t0679700-02
Chr03	irgsp1_rep	CDS	26956053	26956727	.	+	0	Parent=Os03t0679700-02
Chr03	irgsp1_rep	three_prime_UTR	26956728	26956728	.	+	.	Parent=Os03t0679700-02
Chr03	irgsp1_rep	three_prime_UTR	26957543	26957616	.	+	.	Parent=Os03t0679700-02
Chr03	irgsp1_rep	three_prime_UTR	26957778	26958978	.	+	.	Parent=Os03t0679700-02
Chr03	irgsp1_rep	mRNA	26952058	26959001	.	+	.	ID=Os03t0679700-03;Name=Os03t0679700-03;Locus_id=Os03g0679700;Oryzabase Gene Symbol Synonym(s)=OsTHIC%2C THIC;Oryzabase Gene Name Synonym(s)=HMP-P synthase;Note=Similar to Thiamine biosynthesis protein thiC.;Transcript_evidence=AK120238 (DDBJ%2C Best hit);ORF_evidence=B6U4S7 (UniProt);GO=Biological Process: thiamine biosynthetic process (GO:0009228);InterPro=Thiamine biosynthesis protein ThiC (IPR002817);NIAS_FLcDNA=J013044A21;Oryzabase=20998;Expression=AK120238;TENOR=Os03t0679700-03;KEGG=Os03t0679700-03
Chr03	irgsp1_rep	five_prime_UTR	26952058	26952147	.	+	.	Parent=Os03t0679700-03
Chr03	irgsp1_rep	five_prime_UTR	26953254	26953256	.	+	.	Parent=Os03t0679700-03
Chr03	irgsp1_rep	CDS	26953257	26953543	.	+	0	Parent=Os03t0679700-03
Chr03	irgsp1_rep	CDS	26953652	26953782	.	+	1	Parent=Os03t0679700-03
Chr03	irgsp1_rep	CDS	26954407	26955233	.	+	2	Parent=Os03t0679700-03
Chr03	irgsp1_rep	CDS	26956053	26956727	.	+	0	Parent=Os03t0679700-03
Chr03	irgsp1_rep	three_prime_UTR	26956728	26956728	.	+	.	Parent=Os03t0679700-03
Chr03	irgsp1_rep	three_prime_UTR	26957543	26957616	.	+	.	Parent=Os03t0679700-03
Chr03	irgsp1_rep	three_prime_UTR	26957806	26959001	.	+	.	Parent=Os03t0679700-03
Chr03	irgsp1_rep	mRNA	26955147	26957723	.	+	.	ID=Os03t0679700-04;Name=Os03t0679700-04;Locus_id=Os03g0679700;Oryzabase Gene Symbol Synonym(s)=OsTHIC%2C THIC;Oryzabase Gene Name Synonym(s)=HMP-P synthase;Note=Similar to thiamine biosynthesis protein thiC.;Transcript_evidence=AK062075 (DDBJ%2C Best hit);ORF_evidence=B6U4S7 (UniProt);GO=Biological Process: thiamine biosynthetic process (GO:0009228);InterPro=Thiamine biosynthesis protein ThiC (IPR002817);NIAS_FLcDNA=001-044-F03;Oryzabase=20998;Expression=AK062075;TENOR=Os03t0679700-04;KEGG=Os03t0679700-04
Chr03	irgsp1_rep	CDS	26955147	26955233	.	+	0	Parent=Os03t0679700-04
Chr03	irgsp1_rep	CDS	26956053	26956727	.	+	0	Parent=Os03t0679700-04
Chr03	irgsp1_rep	three_prime_UTR	26956728	26956728	.	+	.	Parent=Os03t0679700-04
Chr03	irgsp1_rep	three_prime_UTR	26957525	26957723	.	+	.	Parent=Os03t0679700-04
Chr03	irgsp1_rep	mRNA	26959732	26970464	.	+	.	ID=Os03t0679800-01;Name=Os03t0679800-01;Locus_id=Os03g0679800;Note=Similar to TPR Domain containing protein.;Transcript_evidence=AK099933 (DDBJ%2C Best hit);ORF_evidence=Q10F60 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide TPR2 (IPR013105),Tetratricopeptide repeat (IPR019734),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J013119E02;Oryzabase=22033;TENOR=Os03t0679800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	26959732	26963011	.	+	.	Parent=Os03t0679800-01
Chr03	irgsp1_rep	CDS	26963012	26963138	.	+	0	Parent=Os03t0679800-01
Chr03	irgsp1_rep	CDS	26963902	26964069	.	+	2	Parent=Os03t0679800-01
Chr03	irgsp1_rep	CDS	26965020	26965151	.	+	2	Parent=Os03t0679800-01
Chr03	irgsp1_rep	CDS	26965575	26965714	.	+	2	Parent=Os03t0679800-01
Chr03	irgsp1_rep	CDS	26966362	26966472	.	+	0	Parent=Os03t0679800-01
Chr03	irgsp1_rep	CDS	26966891	26967010	.	+	0	Parent=Os03t0679800-01
Chr03	irgsp1_rep	CDS	26968260	26968361	.	+	0	Parent=Os03t0679800-01
Chr03	irgsp1_rep	CDS	26969645	26969815	.	+	0	Parent=Os03t0679800-01
Chr03	irgsp1_rep	CDS	26969902	26969981	.	+	0	Parent=Os03t0679800-01
Chr03	irgsp1_rep	CDS	26970156	26970219	.	+	1	Parent=Os03t0679800-01
Chr03	irgsp1_rep	three_prime_UTR	26970220	26970464	.	+	.	Parent=Os03t0679800-01
Chr03	irgsp1_rep	mRNA	26960364	26961612	.	+	.	ID=Os03t0679800-02;Name=Os03t0679800-02;Locus_id=Os03g0679800;Note=Hypothetical gene.;Transcript_evidence=AK060719 (DDBJ%2C Best hit);ORF_evidence=Q10F59 (UniProt);NIAS_FLcDNA=001-031-E11;Oryzabase=22033;TENOR=Os03t0679800-02;KEGG=Os03t0679800-02
Chr03	irgsp1_rep	five_prime_UTR	26960364	26960670	.	+	.	Parent=Os03t0679800-02
Chr03	irgsp1_rep	CDS	26960671	26960895	.	+	0	Parent=Os03t0679800-02
Chr03	irgsp1_rep	three_prime_UTR	26960896	26961612	.	+	.	Parent=Os03t0679800-02
Chr03	irgsp1_rep	mRNA	26979830	26985787	.	+	.	ID=Os03t0680100-00;Name=Os03t0680100-00;Locus_id=Os03g0680100;Note=Similar to TPR Domain containing protein.;Transcript_evidence=tplb0030l17 (Wheat FLcDNA);ORF_evidence=Q10F60 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);TENOR=Os03t0680100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	26979830	26979868	.	+	.	Parent=Os03t0680100-00
Chr03	irgsp1_rep	CDS	26979869	26979974	.	+	0	Parent=Os03t0680100-00
Chr03	irgsp1_rep	CDS	26980906	26981037	.	+	2	Parent=Os03t0680100-00
Chr03	irgsp1_rep	CDS	26981469	26981608	.	+	2	Parent=Os03t0680100-00
Chr03	irgsp1_rep	CDS	26982250	26982360	.	+	0	Parent=Os03t0680100-00
Chr03	irgsp1_rep	CDS	26982727	26982831	.	+	0	Parent=Os03t0680100-00
Chr03	irgsp1_rep	CDS	26984033	26984062	.	+	0	Parent=Os03t0680100-00
Chr03	irgsp1_rep	three_prime_UTR	26984063	26984304	.	+	.	Parent=Os03t0680100-00
Chr03	irgsp1_rep	three_prime_UTR	26985450	26985620	.	+	.	Parent=Os03t0680100-00
Chr03	irgsp1_rep	three_prime_UTR	26985711	26985787	.	+	.	Parent=Os03t0680100-00
Chr03	irgsp1_rep	mRNA	26989394	26995230	.	+	.	ID=Os03t0680200-00;Name=Os03t0680200-00;Locus_id=Os03g0680200;Note=Ankyrin repeat domain containing protein.;Transcript_evidence=tplb0030l17 (Wheat FLcDNA);ORF_evidence=NP_001050901.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734),Ankyrin repeat-containing domain (IPR020683);TENOR=Os03t0680200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	26989394	26989565	.	+	0	Parent=Os03t0680200-00
Chr03	irgsp1_rep	CDS	26990384	26990515	.	+	2	Parent=Os03t0680200-00
Chr03	irgsp1_rep	CDS	26991767	26991906	.	+	2	Parent=Os03t0680200-00
Chr03	irgsp1_rep	CDS	26992003	26992110	.	+	0	Parent=Os03t0680200-00
Chr03	irgsp1_rep	CDS	26992259	26992384	.	+	0	Parent=Os03t0680200-00
Chr03	irgsp1_rep	CDS	26992606	26992770	.	+	0	Parent=Os03t0680200-00
Chr03	irgsp1_rep	CDS	26993122	26993223	.	+	0	Parent=Os03t0680200-00
Chr03	irgsp1_rep	CDS	26994556	26994726	.	+	0	Parent=Os03t0680200-00
Chr03	irgsp1_rep	CDS	26994810	26994889	.	+	0	Parent=Os03t0680200-00
Chr03	irgsp1_rep	CDS	26995167	26995230	.	+	1	Parent=Os03t0680200-00
Chr03	irgsp1_rep	mRNA	27000315	27005127	.	+	.	ID=Os03t0680300-00;Name=Os03t0680300-00;Locus_id=Os03g0680300;Note=Similar to TPR Domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10F56 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide TPR2 (IPR013105),Tetratricopeptide repeat (IPR019734),Ankyrin repeat-containing domain (IPR020683);TENOR=Os03t0680300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	27000315	27000345	.	+	0	Parent=Os03t0680300-00
Chr03	irgsp1_rep	CDS	27001145	27001269	.	+	2	Parent=Os03t0680300-00
Chr03	irgsp1_rep	CDS	27001680	27001790	.	+	0	Parent=Os03t0680300-00
Chr03	irgsp1_rep	CDS	27002216	27002341	.	+	0	Parent=Os03t0680300-00
Chr03	irgsp1_rep	CDS	27002784	27002936	.	+	0	Parent=Os03t0680300-00
Chr03	irgsp1_rep	CDS	27003968	27004075	.	+	0	Parent=Os03t0680300-00
Chr03	irgsp1_rep	CDS	27004786	27004956	.	+	0	Parent=Os03t0680300-00
Chr03	irgsp1_rep	CDS	27005044	27005127	.	+	0	Parent=Os03t0680300-00
Chr03	irgsp1_rep	mRNA	27011734	27020823	.	+	.	ID=Os03t0680400-00;Name=Os03t0680400-00;Locus_id=Os03g0680400;Note=Ankyrin repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FAK6 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide TPR2 (IPR013105),Tetratricopeptide repeat (IPR019734),Ankyrin repeat-containing domain (IPR020683);TENOR=Os03t0680400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	27011734	27011854	.	+	0	Parent=Os03t0680400-00
Chr03	irgsp1_rep	CDS	27012216	27012398	.	+	2	Parent=Os03t0680400-00
Chr03	irgsp1_rep	CDS	27013495	27013626	.	+	2	Parent=Os03t0680400-00
Chr03	irgsp1_rep	CDS	27014231	27014370	.	+	2	Parent=Os03t0680400-00
Chr03	irgsp1_rep	CDS	27016061	27016171	.	+	0	Parent=Os03t0680400-00
Chr03	irgsp1_rep	CDS	27016450	27016575	.	+	0	Parent=Os03t0680400-00
Chr03	irgsp1_rep	CDS	27016972	27017124	.	+	0	Parent=Os03t0680400-00
Chr03	irgsp1_rep	CDS	27019097	27019210	.	+	0	Parent=Os03t0680400-00
Chr03	irgsp1_rep	CDS	27019919	27020089	.	+	0	Parent=Os03t0680400-00
Chr03	irgsp1_rep	CDS	27020177	27020256	.	+	0	Parent=Os03t0680400-00
Chr03	irgsp1_rep	CDS	27020685	27020823	.	+	1	Parent=Os03t0680400-00
Chr03	irgsp1_rep	mRNA	27021648	27028824	.	+	.	ID=Os03t0680500-01;Name=Os03t0680500-01;Locus_id=Os03g0680500;Note=Ankyrin repeat domain containing protein.;Transcript_evidence=AK110985 (DDBJ%2C Best hit);ORF_evidence=B9FAL0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=002-174-D03;TENOR=Os03t0680500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	27021648	27021774	.	+	.	Parent=Os03t0680500-01
Chr03	irgsp1_rep	CDS	27021775	27021904	.	+	0	Parent=Os03t0680500-01
Chr03	irgsp1_rep	CDS	27022060	27022221	.	+	2	Parent=Os03t0680500-01
Chr03	irgsp1_rep	CDS	27022582	27022682	.	+	2	Parent=Os03t0680500-01
Chr03	irgsp1_rep	three_prime_UTR	27022683	27022713	.	+	.	Parent=Os03t0680500-01
Chr03	irgsp1_rep	three_prime_UTR	27023432	27023571	.	+	.	Parent=Os03t0680500-01
Chr03	irgsp1_rep	three_prime_UTR	27024304	27024414	.	+	.	Parent=Os03t0680500-01
Chr03	irgsp1_rep	three_prime_UTR	27024495	27024620	.	+	.	Parent=Os03t0680500-01
Chr03	irgsp1_rep	three_prime_UTR	27025146	27025313	.	+	.	Parent=Os03t0680500-01
Chr03	irgsp1_rep	three_prime_UTR	27027178	27027279	.	+	.	Parent=Os03t0680500-01
Chr03	irgsp1_rep	three_prime_UTR	27028045	27028215	.	+	.	Parent=Os03t0680500-01
Chr03	irgsp1_rep	three_prime_UTR	27028300	27028379	.	+	.	Parent=Os03t0680500-01
Chr03	irgsp1_rep	three_prime_UTR	27028527	27028824	.	+	.	Parent=Os03t0680500-01
Chr03	irgsp1_rep	mRNA	27031338	27042644	.	+	.	ID=Os03t0680566-00;Name=Os03t0680566-00;Locus_id=Os03g0680566;Note=Tetratricopeptide TPR-1 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FAK6 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide TPR-1 (IPR001440),Ankyrin repeat (IPR002110),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734),Ankyrin repeat-containing domain (IPR020683);TENOR=Os03t0680566-00
Chr03	irgsp1_rep	CDS	27031338	27031500	.	+	0	Parent=Os03t0680566-00
Chr03	irgsp1_rep	CDS	27032120	27032251	.	+	2	Parent=Os03t0680566-00
Chr03	irgsp1_rep	CDS	27032875	27033014	.	+	2	Parent=Os03t0680566-00
Chr03	irgsp1_rep	CDS	27033434	27033544	.	+	0	Parent=Os03t0680566-00
Chr03	irgsp1_rep	CDS	27033832	27033957	.	+	0	Parent=Os03t0680566-00
Chr03	irgsp1_rep	CDS	27034390	27034542	.	+	0	Parent=Os03t0680566-00
Chr03	irgsp1_rep	CDS	27040975	27041082	.	+	0	Parent=Os03t0680566-00
Chr03	irgsp1_rep	CDS	27042302	27042472	.	+	0	Parent=Os03t0680566-00
Chr03	irgsp1_rep	CDS	27042561	27042644	.	+	0	Parent=Os03t0680566-00
Chr03	irgsp1_rep	mRNA	27044112	27050075	.	+	.	ID=Os03t0680600-00;Name=Os03t0680600-00;Locus_id=Os03g0680600;Note=Ankyrin repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FAL0 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide TPR2 (IPR013105),Tetratricopeptide repeat (IPR019734),Ankyrin repeat-containing domain (IPR020683);TENOR=Os03t0680600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	27044112	27044247	.	+	0	Parent=Os03t0680600-00
Chr03	irgsp1_rep	CDS	27044969	27045100	.	+	2	Parent=Os03t0680600-00
Chr03	irgsp1_rep	CDS	27045553	27045692	.	+	2	Parent=Os03t0680600-00
Chr03	irgsp1_rep	CDS	27046895	27047020	.	+	0	Parent=Os03t0680600-00
Chr03	irgsp1_rep	CDS	27047492	27047659	.	+	0	Parent=Os03t0680600-00
Chr03	irgsp1_rep	CDS	27048523	27048687	.	+	0	Parent=Os03t0680600-00
Chr03	irgsp1_rep	CDS	27049470	27049631	.	+	0	Parent=Os03t0680600-00
Chr03	irgsp1_rep	CDS	27049719	27049798	.	+	0	Parent=Os03t0680600-00
Chr03	irgsp1_rep	CDS	27050012	27050075	.	+	1	Parent=Os03t0680600-00
Chr03	irgsp1_rep	mRNA	27051401	27053435	.	-	.	ID=Os03t0680700-00;Name=Os03t0680700-00;Locus_id=Os03g0680700;Note=Similar to Knotted1-interacting protein.;Transcript_evidence=EU964245 (DDBJ);ORF_evidence=NP_001105184.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),POX (IPR006563),Homeobox KN domain (IPR008422),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);TENOR=Os03t0680700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	27052986	27053435	.	-	0	Parent=Os03t0680700-00
Chr03	irgsp1_rep	CDS	27052456	27052859	.	-	0	Parent=Os03t0680700-00
Chr03	irgsp1_rep	CDS	27051622	27051682	.	-	1	Parent=Os03t0680700-00
Chr03	irgsp1_rep	CDS	27051407	27051532	.	-	0	Parent=Os03t0680700-00
Chr03	irgsp1_rep	three_prime_UTR	27051401	27051406	.	-	.	Parent=Os03t0680700-00
Chr03	irgsp1_rep	mRNA	27057595	27063684	.	-	.	ID=Os03t0680800-01;Name=Os03t0680800-01;Locus_id=Os03g0680800;Oryzabase Gene Symbol Synonym(s)=OsBIHD1%2C BIHD1;Oryzabase Gene Name Synonym(s)=BTH-induced homeodomain protein 1%2C BLH6-like 1%2C BEL1-LIKE HOMEODOMAIN6-like 1;Note=Similar to cDNA clone:J023038C04%2C full insert sequence.;Transcript_evidence=AK070543 (DDBJ%2C Best hit);ORF_evidence=Q9AYD9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),POX (IPR006563),Homeobox KN domain (IPR008422),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);NIAS_FLcDNA=J023057H24;Oryzabase=15698;TENOR=Os03t0680800-01
Chr03	irgsp1_rep	five_prime_UTR	27063188	27063684	.	-	.	Parent=Os03t0680800-01
Chr03	irgsp1_rep	five_prime_UTR	27061950	27062053	.	-	.	Parent=Os03t0680800-01
Chr03	irgsp1_rep	five_prime_UTR	27061194	27061297	.	-	.	Parent=Os03t0680800-01
Chr03	irgsp1_rep	CDS	27060351	27061193	.	-	0	Parent=Os03t0680800-01
Chr03	irgsp1_rep	CDS	27059218	27059594	.	-	0	Parent=Os03t0680800-01
Chr03	irgsp1_rep	CDS	27059078	27059138	.	-	1	Parent=Os03t0680800-01
Chr03	irgsp1_rep	CDS	27057914	27058561	.	-	0	Parent=Os03t0680800-01
Chr03	irgsp1_rep	three_prime_UTR	27057595	27057913	.	-	.	Parent=Os03t0680800-01
Chr03	irgsp1_rep	mRNA	27057033	27063360	.	-	.	ID=Os03t0680800-02;Name=Os03t0680800-02;Locus_id=Os03g0680800;Oryzabase Gene Symbol Synonym(s)=OsBIHD1%2C BIHD1;Oryzabase Gene Name Synonym(s)=BTH-induced homeodomain protein 1%2C BLH6-like 1%2C BEL1-LIKE HOMEODOMAIN6-like 1;Note=Similar to Prep (Fragment).;Transcript_evidence=AK067939 (DDBJ%2C Best hit);ORF_evidence=Q9AYD9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),POX (IPR006563),Homeobox KN domain (IPR008422),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);NIAS_FLcDNA=J013124I05;Oryzabase=15698;Expression=AK067939;TENOR=Os03t0680800-02;KEGG=Os03t0680800-02
Chr03	irgsp1_rep	five_prime_UTR	27063188	27063360	.	-	.	Parent=Os03t0680800-02
Chr03	irgsp1_rep	five_prime_UTR	27061950	27062053	.	-	.	Parent=Os03t0680800-02
Chr03	irgsp1_rep	five_prime_UTR	27061194	27061297	.	-	.	Parent=Os03t0680800-02
Chr03	irgsp1_rep	CDS	27060351	27061193	.	-	0	Parent=Os03t0680800-02
Chr03	irgsp1_rep	CDS	27059218	27059594	.	-	0	Parent=Os03t0680800-02
Chr03	irgsp1_rep	CDS	27059078	27059138	.	-	1	Parent=Os03t0680800-02
Chr03	irgsp1_rep	CDS	27057954	27058561	.	-	0	Parent=Os03t0680800-02
Chr03	irgsp1_rep	CDS	27057192	27057330	.	-	1	Parent=Os03t0680800-02
Chr03	irgsp1_rep	three_prime_UTR	27057033	27057191	.	-	.	Parent=Os03t0680800-02
Chr03	irgsp1_rep	mRNA	27057657	27063352	.	-	.	ID=Os03t0680800-03;Name=Os03t0680800-03;Locus_id=Os03g0680800;Oryzabase Gene Symbol Synonym(s)=OsBIHD1%2C BIHD1;Oryzabase Gene Name Synonym(s)=BTH-induced homeodomain protein 1%2C BLH6-like 1%2C BEL1-LIKE HOMEODOMAIN6-like 1;Note=Similar to Associated with HOX family protein%2C expressed.;Transcript_evidence=AK060746 (DDBJ%2C Best hit);ORF_evidence=Q10F49 (UniProt);NIAS_FLcDNA=001-032-E12;Oryzabase=15698;Expression=AK060746;TENOR=Os03t0680800-03;KEGG=Os03t0680800-03
Chr03	irgsp1_rep	five_prime_UTR	27063188	27063352	.	-	.	Parent=Os03t0680800-03
Chr03	irgsp1_rep	five_prime_UTR	27061950	27062053	.	-	.	Parent=Os03t0680800-03
Chr03	irgsp1_rep	five_prime_UTR	27061194	27061297	.	-	.	Parent=Os03t0680800-03
Chr03	irgsp1_rep	CDS	27060589	27061193	.	-	0	Parent=Os03t0680800-03
Chr03	irgsp1_rep	CDS	27058384	27058390	.	-	1	Parent=Os03t0680800-03
Chr03	irgsp1_rep	three_prime_UTR	27057657	27058383	.	-	.	Parent=Os03t0680800-03
Chr03	irgsp1_rep	mRNA	27057621	27059304	.	-	.	ID=Os03t0680800-04;Name=Os03t0680800-04;Locus_id=Os03g0680800;Oryzabase Gene Symbol Synonym(s)=OsBIHD1%2C BIHD1;Oryzabase Gene Name Synonym(s)=BTH-induced homeodomain protein 1%2C BLH6-like 1%2C BEL1-LIKE HOMEODOMAIN6-like 1;Note=Similar to cDNA clone:J023038C04%2C full insert sequence.;Transcript_evidence=AK061393 (DDBJ%2C Best hit),AK104713 (DDBJ%2C Best hit);ORF_evidence=Q9AYD9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),Homeobox KN domain (IPR008422),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);NIAS_FLcDNA=006-305-D05,001-037-H09;Oryzabase=15698;Expression=AK061393;TENOR=Os03t0680800-04;KEGG=Os03t0680800-04
Chr03	irgsp1_rep	five_prime_UTR	27059304	27059304	.	-	.	Parent=Os03t0680800-04
Chr03	irgsp1_rep	CDS	27059218	27059303	.	-	0	Parent=Os03t0680800-04
Chr03	irgsp1_rep	CDS	27059078	27059138	.	-	1	Parent=Os03t0680800-04
Chr03	irgsp1_rep	CDS	27057914	27058561	.	-	0	Parent=Os03t0680800-04
Chr03	irgsp1_rep	three_prime_UTR	27057621	27057913	.	-	.	Parent=Os03t0680800-04
Chr03	irgsp1_rep	mRNA	27057595	27063359	.	-	.	ID=Os03t0680800-05;Name=Os03t0680800-05;Locus_id=Os03g0680800;Oryzabase Gene Symbol Synonym(s)=OsBIHD1%2C BIHD1;Oryzabase Gene Name Synonym(s)=BTH-induced homeodomain protein 1%2C BLH6-like 1%2C BEL1-LIKE HOMEODOMAIN6-like 1;Note=Similar to cDNA clone:J023038C04%2C full insert sequence.;Transcript_evidence=AK069994 (DDBJ%2C Best hit);ORF_evidence=Q6QUW0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),POX (IPR006563),Homeobox KN domain (IPR008422),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);NIAS_FLcDNA=J023038C04;Oryzabase=15698;TENOR=Os03t0680800-05
Chr03	irgsp1_rep	five_prime_UTR	27063188	27063359	.	-	.	Parent=Os03t0680800-05
Chr03	irgsp1_rep	five_prime_UTR	27061950	27062053	.	-	.	Parent=Os03t0680800-05
Chr03	irgsp1_rep	five_prime_UTR	27061194	27061297	.	-	.	Parent=Os03t0680800-05
Chr03	irgsp1_rep	CDS	27060351	27061193	.	-	0	Parent=Os03t0680800-05
Chr03	irgsp1_rep	CDS	27059218	27059594	.	-	0	Parent=Os03t0680800-05
Chr03	irgsp1_rep	CDS	27059078	27059138	.	-	1	Parent=Os03t0680800-05
Chr03	irgsp1_rep	CDS	27057914	27058561	.	-	0	Parent=Os03t0680800-05
Chr03	irgsp1_rep	three_prime_UTR	27057595	27057913	.	-	.	Parent=Os03t0680800-05
Chr03	irgsp1_rep	mRNA	27081548	27082145	.	+	.	ID=Os03t0681000-00;Name=Os03t0681000-00;Locus_id=Os03g0681000;Note=Protein of unknown function DUF819 domain containing protein.;Transcript_evidence=BT061349 (DDBJ);ORF_evidence=B8API7 (UniProt);InterPro=Protein of unknown function DUF819 (IPR008537);TENOR=Os03t0681000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	27081548	27081554	.	+	.	Parent=Os03t0681000-00
Chr03	irgsp1_rep	CDS	27081555	27082145	.	+	0	Parent=Os03t0681000-00
Chr03	irgsp1_rep	mRNA	27089064	27091738	.	+	.	ID=Os03t0681201-00;Name=Os03t0681201-00;Locus_id=Os03g0681201;Note=Similar to predicted protein.;Transcript_evidence=CT835232 (DDBJ%2C Best hit);ORF_evidence=NP_176121.2 (RefSeq);TENOR=Os03t0681201-00
Chr03	irgsp1_rep	five_prime_UTR	27089064	27089309	.	+	.	Parent=Os03t0681201-00
Chr03	irgsp1_rep	CDS	27089310	27089338	.	+	0	Parent=Os03t0681201-00
Chr03	irgsp1_rep	CDS	27090504	27090615	.	+	1	Parent=Os03t0681201-00
Chr03	irgsp1_rep	CDS	27091597	27091738	.	+	0	Parent=Os03t0681201-00
Chr03	irgsp1_rep	mRNA	27110190	27110786	.	+	.	ID=Os03t0681300-01;Name=Os03t0681300-01;Locus_id=Os03g0681300;Note=Similar to SABRE.;Transcript_evidence=AK062837 (DDBJ%2C Best hit);ORF_evidence=Q10F47 (UniProt);NIAS_FLcDNA=001-107-H01;Expression=AK062837;TENOR=Os03t0681300-01;KEGG=Os03t0681300-01
Chr03	irgsp1_rep	CDS	27110190	27110390	.	+	0	Parent=Os03t0681300-01
Chr03	irgsp1_rep	three_prime_UTR	27110391	27110786	.	+	.	Parent=Os03t0681300-01
Chr03	irgsp1_rep	mRNA	27111495	27116436	.	-	.	ID=Os03t0681400-01;Name=Os03t0681400-01;Locus_id=Os03g0681400;CGSNL Gene Symbol=UBC25;CGSNL Gene Name=UBIQUITIN-CONJUGATING ENZYME 25;Oryzabase Gene Symbol Synonym(s)=OsUBC25;Oryzabase Gene Name Synonym(s)=Ubiquitin-conjugating enzyme 25;Note=Similar to Ubiquitin-conjugating enzyme E2-18 kDa (EC 6.3.2.19) (Ubiquitin- conjugating enzyme 15) (Ubiquitin-protein ligase) (Ubiquitin carrier protein) (PM42).;Transcript_evidence=AK103809 (DDBJ%2C Best hit);ORF_evidence=B9HFA8 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135);NIAS_FLcDNA=J033147A12;Oryzabase=19565;Expression=AK103809;TENOR=Os03t0681400-01;KEGG=Os03t0681400-01 (EC:6.3.2.19)
Chr03	irgsp1_rep	five_prime_UTR	27116364	27116436	.	-	.	Parent=Os03t0681400-01
Chr03	irgsp1_rep	CDS	27116334	27116363	.	-	0	Parent=Os03t0681400-01
Chr03	irgsp1_rep	CDS	27116080	27116183	.	-	0	Parent=Os03t0681400-01
Chr03	irgsp1_rep	CDS	27115672	27115774	.	-	1	Parent=Os03t0681400-01
Chr03	irgsp1_rep	CDS	27115496	27115559	.	-	0	Parent=Os03t0681400-01
Chr03	irgsp1_rep	CDS	27111910	27111998	.	-	2	Parent=Os03t0681400-01
Chr03	irgsp1_rep	CDS	27111729	27111824	.	-	0	Parent=Os03t0681400-01
Chr03	irgsp1_rep	three_prime_UTR	27111495	27111728	.	-	.	Parent=Os03t0681400-01
Chr03	irgsp1_rep	mRNA	27120054	27123781	.	+	.	ID=Os03t0681700-01;Name=Os03t0681700-01;Locus_id=Os03g0681700;RAP-DB Gene Symbol Synonym(s)=OsWD40-81%2C OsLST8%2C LST8;Oryzabase Gene Symbol Synonym(s)=OsWD40-81%2C OsLST8%2C LST8;Note=Component of TORC1(Target of rapamycin complex 1);Transcript_evidence=AK111767;ORF_evidence=Q9AYE4;GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),Quinoprotein alcohol dehydrogenase-like superfamily (IPR011047),WD40 repeat (IPR001680),G-protein beta WD-40 repeat (IPR020472),WD40 repeat%2C conserved site (IPR019775);NIAS_FLcDNA=J023073H02;Manual Curation=July 29%2C 2016;Literature_PMID=25956502;Oryzabase=10762;Expression=AK111767;TENOR=Os03t0681700-01;KEGG=Os03t0681700-01
Chr03	irgsp1_rep	five_prime_UTR	27120054	27120225	.	+	.	Parent=Os03t0681700-01
Chr03	irgsp1_rep	five_prime_UTR	27120538	27120551	.	+	.	Parent=Os03t0681700-01
Chr03	irgsp1_rep	CDS	27120552	27120659	.	+	0	Parent=Os03t0681700-01
Chr03	irgsp1_rep	CDS	27121242	27121343	.	+	0	Parent=Os03t0681700-01
Chr03	irgsp1_rep	CDS	27121428	27121540	.	+	0	Parent=Os03t0681700-01
Chr03	irgsp1_rep	CDS	27121895	27121964	.	+	1	Parent=Os03t0681700-01
Chr03	irgsp1_rep	CDS	27122385	27122462	.	+	0	Parent=Os03t0681700-01
Chr03	irgsp1_rep	CDS	27122537	27122653	.	+	0	Parent=Os03t0681700-01
Chr03	irgsp1_rep	CDS	27122775	27122869	.	+	0	Parent=Os03t0681700-01
Chr03	irgsp1_rep	CDS	27123117	27123196	.	+	1	Parent=Os03t0681700-01
Chr03	irgsp1_rep	CDS	27123289	27123348	.	+	2	Parent=Os03t0681700-01
Chr03	irgsp1_rep	CDS	27123442	27123569	.	+	2	Parent=Os03t0681700-01
Chr03	irgsp1_rep	three_prime_UTR	27123570	27123781	.	+	.	Parent=Os03t0681700-01
Chr03	irgsp1_rep	mRNA	27124427	27124972	.	-	.	ID=Os03t0681750-00;Name=Os03t0681750-00;Locus_id=Os03g0681750;Note=Hypothetical gene.;Transcript_evidence=CT835257 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os03t0681750-00;KEGG=Os03t0681750-00
Chr03	irgsp1_rep	five_prime_UTR	27124957	27124972	.	-	.	Parent=Os03t0681750-00
Chr03	irgsp1_rep	CDS	27124714	27124956	.	-	0	Parent=Os03t0681750-00
Chr03	irgsp1_rep	three_prime_UTR	27124427	27124713	.	-	.	Parent=Os03t0681750-00
Chr03	irgsp1_rep	mRNA	27125016	27130733	.	-	.	ID=Os03t0681800-00;Name=Os03t0681800-00;Locus_id=Os03g0681800;CGSNL Gene Symbol=PP2A-B'BETA;CGSNL Gene Name=PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' BETA;Oryzabase Gene Symbol Synonym(s)=OsPP2A-B'beta%2C OsB'beta;Oryzabase Gene Name Synonym(s)=protein phosphatase 2A B'beta subunit;Note=Protein phosphatase 2A%2C regulatory B subunit%2C B56 domain containing protein.;Transcript_evidence=EU957243 (DDBJ);ORF_evidence=NP_001148001.1 (RefSeq);GO=Biological Process: signal transduction (GO:0007165),Cellular Component: protein phosphatase type 2A complex (GO:0000159),Molecular Function: binding (GO:0005488),Molecular Function: protein phosphatase type 2A regulator activity (GO:0008601);InterPro=Protein phosphatase 2A%2C regulatory B subunit%2C B56 (IPR002554),Armadillo-type fold (IPR016024);Oryzabase=23331;TENOR=Os03t0681800-00;KEGG=Os03t0681800-00
Chr03	irgsp1_rep	five_prime_UTR	27130551	27130733	.	-	.	Parent=Os03t0681800-00
Chr03	irgsp1_rep	CDS	27129270	27130550	.	-	0	Parent=Os03t0681800-00
Chr03	irgsp1_rep	CDS	27125289	27125615	.	-	0	Parent=Os03t0681800-00
Chr03	irgsp1_rep	three_prime_UTR	27125016	27125288	.	-	.	Parent=Os03t0681800-00
Chr03	irgsp1_rep	mRNA	27134606	27138691	.	-	.	ID=Os03t0681900-01;Name=Os03t0681900-01;Locus_id=Os03g0681900;Oryzabase Gene Symbol Synonym(s)=OsRZ3;Oryzabase Gene Name Synonym(s)=zinc finger-containing glycine-rich RNA-binding protein 3;Note=Similar to RGP-3 (Fragment).;Transcript_evidence=AK061750 (DDBJ%2C Best hit),AK062094 (DDBJ%2C Best hit);ORF_evidence=B8APJ2 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA recognition motif domain (IPR000504),Zinc finger%2C CCHC-type (IPR001878),Nucleotide-binding%2C alpha-beta plait (IPR012677),Zinc finger%2C CCHC retroviral-type (IPR013084);NIAS_FLcDNA=001-038-G09,001-044-H07;Oryzabase=13469;Expression=AK061750;TENOR=Os03t0681900-01;KEGG=Os03t0681900-01
Chr03	irgsp1_rep	five_prime_UTR	27138632	27138691	.	-	.	Parent=Os03t0681900-01
Chr03	irgsp1_rep	CDS	27138521	27138631	.	-	0	Parent=Os03t0681900-01
Chr03	irgsp1_rep	CDS	27134773	27135588	.	-	0	Parent=Os03t0681900-01
Chr03	irgsp1_rep	three_prime_UTR	27134606	27134772	.	-	.	Parent=Os03t0681900-01
Chr03	irgsp1_rep	mRNA	27143712	27145616	.	-	.	ID=Os03t0682100-00;Name=Os03t0682100-00;Locus_id=Os03g0682100;CGSNL Gene Symbol=MFS1;CGSNL Gene Name=MAJOR FACILITATOR SUPERFAMILY 1;Oryzabase Gene Symbol Synonym(s)=OsMFS1;Oryzabase Gene Name Synonym(s)=major facilitator superfamily 1;Note=Similar to nitrate and chloride transporter.;Transcript_evidence=AK359238 (DDBJ);ORF_evidence=NP_001152028.1 (RefSeq);InterPro=Nodulin-like (IPR010658),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);Oryzabase=21384;TENOR=Os03t0682100-00;KEGG=Os03t0682100-00
Chr03	irgsp1_rep	CDS	27143796	27145616	.	-	0	Parent=Os03t0682100-00
Chr03	irgsp1_rep	three_prime_UTR	27143712	27143795	.	-	.	Parent=Os03t0682100-00
Chr03	irgsp1_rep	mRNA	27153508	27156667	.	-	.	ID=Os03t0682200-00;Name=Os03t0682200-00;Locus_id=Os03g0682200;CGSNL Gene Symbol=AGO12;CGSNL Gene Name=ARGONAUTE 12;Oryzabase Gene Symbol Synonym(s)=OsAGO12;Oryzabase Gene Name Synonym(s)=Protein argonaute 12;Note=Similar to Protein argonaute 12.;Transcript_evidence=BT069625 (DDBJ);ORF_evidence=Q7Y001 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515);InterPro=Stem cell self-renewal protein Piwi (IPR003165),Ribonuclease H-like (IPR012337);Oryzabase=8261;TENOR=Os03t0682200-00;KEGG=Os03t0682200-00
Chr03	irgsp1_rep	CDS	27156596	27156667	.	-	0	Parent=Os03t0682200-00
Chr03	irgsp1_rep	CDS	27156112	27156234	.	-	0	Parent=Os03t0682200-00
Chr03	irgsp1_rep	CDS	27155842	27156013	.	-	0	Parent=Os03t0682200-00
Chr03	irgsp1_rep	CDS	27155647	27155768	.	-	2	Parent=Os03t0682200-00
Chr03	irgsp1_rep	CDS	27155423	27155560	.	-	0	Parent=Os03t0682200-00
Chr03	irgsp1_rep	CDS	27154832	27154974	.	-	0	Parent=Os03t0682200-00
Chr03	irgsp1_rep	CDS	27154697	27154759	.	-	1	Parent=Os03t0682200-00
Chr03	irgsp1_rep	CDS	27154559	27154622	.	-	1	Parent=Os03t0682200-00
Chr03	irgsp1_rep	CDS	27154320	27154449	.	-	0	Parent=Os03t0682200-00
Chr03	irgsp1_rep	CDS	27154144	27154217	.	-	2	Parent=Os03t0682200-00
Chr03	irgsp1_rep	CDS	27153952	27154046	.	-	0	Parent=Os03t0682200-00
Chr03	irgsp1_rep	CDS	27153807	27153838	.	-	1	Parent=Os03t0682200-00
Chr03	irgsp1_rep	CDS	27153511	27153680	.	-	2	Parent=Os03t0682200-00
Chr03	irgsp1_rep	three_prime_UTR	27153508	27153510	.	-	.	Parent=Os03t0682200-00
Chr03	irgsp1_rep	mRNA	27165389	27176225	.	-	.	ID=Os03t0682600-00;Name=Os03t0682600-00;Locus_id=Os03g0682600;CGSNL Gene Symbol=AGO11;CGSNL Gene Name=ARGONAUTE 11;Oryzabase Gene Symbol Synonym(s)=OsAGO11;Oryzabase Gene Name Synonym(s)=Protein argonaute 11;Note=Protein argonaute 11.;Transcript_evidence=Q10F39 (UniProt);ORF_evidence=Q10F39 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515);InterPro=Argonaute/Dicer protein%2C PAZ (IPR003100),Stem cell self-renewal protein Piwi (IPR003165),Ribonuclease H-like (IPR012337);Oryzabase=8260;TENOR=Os03t0682600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	27176184	27176225	.	-	0	Parent=Os03t0682600-00
Chr03	irgsp1_rep	CDS	27175537	27175742	.	-	0	Parent=Os03t0682600-00
Chr03	irgsp1_rep	CDS	27175379	27175458	.	-	1	Parent=Os03t0682600-00
Chr03	irgsp1_rep	CDS	27174679	27174759	.	-	2	Parent=Os03t0682600-00
Chr03	irgsp1_rep	CDS	27173246	27173336	.	-	2	Parent=Os03t0682600-00
Chr03	irgsp1_rep	CDS	27172794	27172926	.	-	1	Parent=Os03t0682600-00
Chr03	irgsp1_rep	CDS	27172548	27172664	.	-	0	Parent=Os03t0682600-00
Chr03	irgsp1_rep	CDS	27171069	27171176	.	-	0	Parent=Os03t0682600-00
Chr03	irgsp1_rep	CDS	27170921	27170992	.	-	0	Parent=Os03t0682600-00
Chr03	irgsp1_rep	CDS	27170310	27170432	.	-	0	Parent=Os03t0682600-00
Chr03	irgsp1_rep	CDS	27170053	27170230	.	-	0	Parent=Os03t0682600-00
Chr03	irgsp1_rep	CDS	27169866	27169939	.	-	2	Parent=Os03t0682600-00
Chr03	irgsp1_rep	CDS	27169564	27169701	.	-	0	Parent=Os03t0682600-00
Chr03	irgsp1_rep	CDS	27167482	27167624	.	-	0	Parent=Os03t0682600-00
Chr03	irgsp1_rep	CDS	27167322	27167387	.	-	1	Parent=Os03t0682600-00
Chr03	irgsp1_rep	CDS	27167174	27167237	.	-	1	Parent=Os03t0682600-00
Chr03	irgsp1_rep	CDS	27166931	27167066	.	-	0	Parent=Os03t0682600-00
Chr03	irgsp1_rep	CDS	27166774	27166847	.	-	2	Parent=Os03t0682600-00
Chr03	irgsp1_rep	CDS	27166178	27166272	.	-	0	Parent=Os03t0682600-00
Chr03	irgsp1_rep	CDS	27165769	27165800	.	-	1	Parent=Os03t0682600-00
Chr03	irgsp1_rep	CDS	27165389	27165579	.	-	2	Parent=Os03t0682600-00
Chr03	irgsp1_rep	mRNA	27181601	27188612	.	+	.	ID=Os03t0682666-00;Name=Os03t0682666-00;Locus_id=Os03g0682666;Note=Hypothetical gene.;Transcript_evidence=AK071220 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;Expression=AK071220;TENOR=Os03t0682666-00;KEGG=Os03t0682666-00
Chr03	irgsp1_rep	five_prime_UTR	27181601	27181775	.	+	.	Parent=Os03t0682666-00
Chr03	irgsp1_rep	five_prime_UTR	27187961	27188068	.	+	.	Parent=Os03t0682666-00
Chr03	irgsp1_rep	CDS	27188069	27188178	.	+	0	Parent=Os03t0682666-00
Chr03	irgsp1_rep	CDS	27188197	27188299	.	+	1	Parent=Os03t0682666-00
Chr03	irgsp1_rep	three_prime_UTR	27188300	27188612	.	+	.	Parent=Os03t0682666-00
Chr03	irgsp1_rep	mRNA	27208712	27210035	.	-	.	ID=Os03t0682822-00;Name=Os03t0682822-00;Locus_id=Os03g0682822;Note=Hypothetical protein.;Transcript_evidence=tplb0014h21 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0682822-00
Chr03	irgsp1_rep	five_prime_UTR	27210035	27210035	.	-	.	Parent=Os03t0682822-00
Chr03	irgsp1_rep	CDS	27208712	27210034	.	-	0	Parent=Os03t0682822-00
Chr03	irgsp1_rep	mRNA	27222551	27223333	.	-	.	ID=Os03t0683200-00;Name=Os03t0683200-00;Locus_id=Os03g0683200;Note=Ribosome-inactivating protein domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3ALG7 (UniProt);GO=Biological Process: negative regulation of translation (GO:0017148),Molecular Function: rRNA N-glycosylase activity (GO:0030598);InterPro=Ribosome-inactivating protein (IPR001574),Ribosome-inactivating protein%2C subdomain 1 (IPR016138);TENOR=Os03t0683200-00;KEGG=Os03t0683200-00
Chr03	irgsp1_rep	CDS	27222551	27223333	.	-	0	Parent=Os03t0683200-00
Chr03	irgsp1_rep	mRNA	27226258	27227285	.	-	.	ID=Os03t0683300-01;Name=Os03t0683300-01;Locus_id=Os03g0683300;Note=Ribosome-inactivating protein family protein.;Transcript_evidence=AK106886 (DDBJ%2C Best hit);ORF_evidence=Q7Y000 (UniProt);GO=Biological Process: negative regulation of translation (GO:0017148),Molecular Function: rRNA N-glycosylase activity (GO:0030598);InterPro=Ribosome-inactivating protein (IPR001574),Ribosome-inactivating protein%2C subdomain 1 (IPR016138);NIAS_FLcDNA=002-118-F11;Expression=AK106886;TENOR=Os03t0683300-01;KEGG=Os03t0683300-01
Chr03	irgsp1_rep	five_prime_UTR	27227279	27227285	.	-	.	Parent=Os03t0683300-01
Chr03	irgsp1_rep	CDS	27226403	27227278	.	-	0	Parent=Os03t0683300-01
Chr03	irgsp1_rep	three_prime_UTR	27226258	27226402	.	-	.	Parent=Os03t0683300-01
Chr03	irgsp1_rep	mRNA	27233058	27233772	.	+	.	ID=Os03t0683500-01;Name=Os03t0683500-01;Locus_id=Os03g0683500;Note=Hypothetical conserved gene.;Transcript_evidence=AK242405 (DDBJ%2C Best hit);ORF_evidence=NP_001173586.1 (RefSeq);GO=Biological Process: negative regulation of translation (GO:0017148),Molecular Function: rRNA N-glycosylase activity (GO:0030598);InterPro=Ribosome-inactivating protein (IPR001574);NIAS_FLcDNA=J080070I21;TENOR=Os03t0683500-01;KEGG=Os03t0683500-01
Chr03	irgsp1_rep	CDS	27233058	27233615	.	+	0	Parent=Os03t0683500-01
Chr03	irgsp1_rep	three_prime_UTR	27233616	27233772	.	+	.	Parent=Os03t0683500-01
Chr03	irgsp1_rep	mRNA	27238474	27250932	.	+	.	ID=Os03t0683700-01;Name=Os03t0683700-01;Locus_id=Os03g0683700;CGSNL Gene Symbol=DUF810.2;CGSNL Gene Name=DUF810 FAMILY MEMBER 2;Oryzabase Gene Symbol Synonym(s)=OsDUF810.2;Oryzabase Gene Name Synonym(s)=domains of unknown function 810.2%2C DUF810 family member 2;Note=Conserved hypothetical protein.;Transcript_evidence=AK065067 (DDBJ%2C Best hit);ORF_evidence=B8APK0 (UniProt);NIAS_FLcDNA=J013001J22;Oryzabase=22672;TENOR=Os03t0683700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	27238474	27238640	.	+	0	Parent=Os03t0683700-01
Chr03	irgsp1_rep	CDS	27239242	27239293	.	+	1	Parent=Os03t0683700-01
Chr03	irgsp1_rep	three_prime_UTR	27239294	27239331	.	+	.	Parent=Os03t0683700-01
Chr03	irgsp1_rep	three_prime_UTR	27239420	27239595	.	+	.	Parent=Os03t0683700-01
Chr03	irgsp1_rep	three_prime_UTR	27239676	27239740	.	+	.	Parent=Os03t0683700-01
Chr03	irgsp1_rep	three_prime_UTR	27240037	27240379	.	+	.	Parent=Os03t0683700-01
Chr03	irgsp1_rep	three_prime_UTR	27240542	27240608	.	+	.	Parent=Os03t0683700-01
Chr03	irgsp1_rep	three_prime_UTR	27240709	27240862	.	+	.	Parent=Os03t0683700-01
Chr03	irgsp1_rep	three_prime_UTR	27241159	27241326	.	+	.	Parent=Os03t0683700-01
Chr03	irgsp1_rep	three_prime_UTR	27241429	27241539	.	+	.	Parent=Os03t0683700-01
Chr03	irgsp1_rep	three_prime_UTR	27241649	27241856	.	+	.	Parent=Os03t0683700-01
Chr03	irgsp1_rep	three_prime_UTR	27241952	27242055	.	+	.	Parent=Os03t0683700-01
Chr03	irgsp1_rep	three_prime_UTR	27242624	27242854	.	+	.	Parent=Os03t0683700-01
Chr03	irgsp1_rep	three_prime_UTR	27243427	27243501	.	+	.	Parent=Os03t0683700-01
Chr03	irgsp1_rep	three_prime_UTR	27243781	27243852	.	+	.	Parent=Os03t0683700-01
Chr03	irgsp1_rep	three_prime_UTR	27244634	27244819	.	+	.	Parent=Os03t0683700-01
Chr03	irgsp1_rep	three_prime_UTR	27244905	27245063	.	+	.	Parent=Os03t0683700-01
Chr03	irgsp1_rep	three_prime_UTR	27245288	27245380	.	+	.	Parent=Os03t0683700-01
Chr03	irgsp1_rep	three_prime_UTR	27245767	27245838	.	+	.	Parent=Os03t0683700-01
Chr03	irgsp1_rep	three_prime_UTR	27246346	27246463	.	+	.	Parent=Os03t0683700-01
Chr03	irgsp1_rep	three_prime_UTR	27246706	27246884	.	+	.	Parent=Os03t0683700-01
Chr03	irgsp1_rep	three_prime_UTR	27247289	27247370	.	+	.	Parent=Os03t0683700-01
Chr03	irgsp1_rep	three_prime_UTR	27247563	27247673	.	+	.	Parent=Os03t0683700-01
Chr03	irgsp1_rep	three_prime_UTR	27247752	27247858	.	+	.	Parent=Os03t0683700-01
Chr03	irgsp1_rep	three_prime_UTR	27248231	27248308	.	+	.	Parent=Os03t0683700-01
Chr03	irgsp1_rep	three_prime_UTR	27248394	27248489	.	+	.	Parent=Os03t0683700-01
Chr03	irgsp1_rep	three_prime_UTR	27248664	27248759	.	+	.	Parent=Os03t0683700-01
Chr03	irgsp1_rep	three_prime_UTR	27250409	27250932	.	+	.	Parent=Os03t0683700-01
Chr03	irgsp1_rep	mRNA	27246840	27250968	.	+	.	ID=Os03t0683700-02;Name=Os03t0683700-02;Locus_id=Os03g0683700;CGSNL Gene Symbol=DUF810.2;CGSNL Gene Name=DUF810 FAMILY MEMBER 2;Oryzabase Gene Symbol Synonym(s)=OsDUF810.2;Oryzabase Gene Name Synonym(s)=domains of unknown function 810.2%2C DUF810 family member 2;Note=Hypothetical conserved gene.;Transcript_evidence=AK062164 (DDBJ%2C Best hit);ORF_evidence=Q9AUJ8 (UniProt);InterPro=Mammalian uncoordinated homology 13%2C domain 2 (IPR014772);NIAS_FLcDNA=001-046-B05;Oryzabase=22672;Expression=AK062164;TENOR=Os03t0683700-02;KEGG=Os03t0683700-02
Chr03	irgsp1_rep	CDS	27246840	27246884	.	+	0	Parent=Os03t0683700-02
Chr03	irgsp1_rep	CDS	27247289	27247370	.	+	0	Parent=Os03t0683700-02
Chr03	irgsp1_rep	CDS	27247563	27247673	.	+	2	Parent=Os03t0683700-02
Chr03	irgsp1_rep	CDS	27247752	27247858	.	+	2	Parent=Os03t0683700-02
Chr03	irgsp1_rep	CDS	27248231	27248308	.	+	0	Parent=Os03t0683700-02
Chr03	irgsp1_rep	CDS	27248394	27248489	.	+	0	Parent=Os03t0683700-02
Chr03	irgsp1_rep	CDS	27248664	27248759	.	+	0	Parent=Os03t0683700-02
Chr03	irgsp1_rep	CDS	27250409	27250576	.	+	0	Parent=Os03t0683700-02
Chr03	irgsp1_rep	three_prime_UTR	27250577	27250968	.	+	.	Parent=Os03t0683700-02
Chr03	irgsp1_rep	mRNA	27251938	27256513	.	+	.	ID=Os03t0683800-01;Name=Os03t0683800-01;Locus_id=Os03g0683800;CGSNL Gene Symbol=GELP53;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 53;Oryzabase Gene Symbol Synonym(s)=OsGELP53;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 53;Note=Similar to Proline-rich protein APG-like.;Transcript_evidence=AK060516 (DDBJ%2C Best hit),AK099266 (DDBJ%2C Best hit);ORF_evidence=B6TNT3 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: lipase activity (GO:0016298),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087),Lipase%2C GDSL%2C active site (IPR008265),Esterase%2C SGNH hydrolase-type (IPR013830);NIAS_FLcDNA=001-020-A02,J023013F22;Oryzabase=11003;Expression=AK060516;TENOR=Os03t0683800-01;KEGG=Os03t0683800-01
Chr03	irgsp1_rep	five_prime_UTR	27251938	27252018	.	+	.	Parent=Os03t0683800-01
Chr03	irgsp1_rep	CDS	27252019	27252405	.	+	0	Parent=Os03t0683800-01
Chr03	irgsp1_rep	CDS	27253069	27253302	.	+	0	Parent=Os03t0683800-01
Chr03	irgsp1_rep	CDS	27255466	27255724	.	+	0	Parent=Os03t0683800-01
Chr03	irgsp1_rep	CDS	27255993	27256186	.	+	2	Parent=Os03t0683800-01
Chr03	irgsp1_rep	three_prime_UTR	27256187	27256513	.	+	.	Parent=Os03t0683800-01
Chr03	irgsp1_rep	mRNA	27252025	27256187	.	-	.	ID=Os03t0683816-00;Name=Os03t0683816-00;Locus_id=Os03g0683816;Note=Hypothetical protein.;Transcript_evidence=tplb0026k01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0683816-00
Chr03	irgsp1_rep	five_prime_UTR	27255980	27256187	.	-	.	Parent=Os03t0683816-00
Chr03	irgsp1_rep	five_prime_UTR	27255681	27255715	.	-	.	Parent=Os03t0683816-00
Chr03	irgsp1_rep	CDS	27255449	27255680	.	-	0	Parent=Os03t0683816-00
Chr03	irgsp1_rep	CDS	27253102	27253283	.	-	2	Parent=Os03t0683816-00
Chr03	irgsp1_rep	CDS	27252426	27252437	.	-	0	Parent=Os03t0683816-00
Chr03	irgsp1_rep	three_prime_UTR	27252025	27252425	.	-	.	Parent=Os03t0683816-00
Chr03	irgsp1_rep	mRNA	27257670	27257845	.	-	.	ID=Os03t0683833-00;Name=Os03t0683833-00;Locus_id=Os03g0683833;Note=Non-protein coding transcript.;Transcript_evidence=CT835278 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os03t0683833-00
Chr03	irgsp1_rep	exon	27257670	27257845	.	-	.	Parent=Os03t0683833-00
Chr03	irgsp1_rep	mRNA	27257889	27264126	.	-	.	ID=Os03t0683866-00;Name=Os03t0683866-00;Locus_id=Os03g0683866;Note=Similar to UPL7 (ubiquitin-protein ligase 7)%3B ubiquitin-protein ligase.;Transcript_evidence=EU948846 (DDBJ);ORF_evidence=NP_190877.1 (RefSeq);GO=Biological Process: protein modification process (GO:0006464),Cellular Component: intracellular (GO:0005622),Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=HECT (IPR000569);TENOR=Os03t0683866-00;KEGG=Os03t0683866-00
Chr03	irgsp1_rep	CDS	27263401	27264126	.	-	0	Parent=Os03t0683866-00
Chr03	irgsp1_rep	CDS	27262976	27263310	.	-	0	Parent=Os03t0683866-00
Chr03	irgsp1_rep	CDS	27261897	27262175	.	-	1	Parent=Os03t0683866-00
Chr03	irgsp1_rep	CDS	27261542	27261794	.	-	1	Parent=Os03t0683866-00
Chr03	irgsp1_rep	CDS	27260536	27260706	.	-	0	Parent=Os03t0683866-00
Chr03	irgsp1_rep	CDS	27260351	27260443	.	-	0	Parent=Os03t0683866-00
Chr03	irgsp1_rep	CDS	27259796	27259903	.	-	0	Parent=Os03t0683866-00
Chr03	irgsp1_rep	CDS	27258305	27258421	.	-	0	Parent=Os03t0683866-00
Chr03	irgsp1_rep	CDS	27258130	27258219	.	-	0	Parent=Os03t0683866-00
Chr03	irgsp1_rep	CDS	27257895	27257978	.	-	0	Parent=Os03t0683866-00
Chr03	irgsp1_rep	three_prime_UTR	27257889	27257894	.	-	.	Parent=Os03t0683866-00
Chr03	irgsp1_rep	mRNA	27265560	27268578	.	-	.	ID=Os03t0683900-01;Name=Os03t0683900-01;Locus_id=Os03g0683900;Note=Similar to UPL7%3B ubiquitin-protein ligase.;Transcript_evidence=AK107672 (DDBJ%2C Best hit);ORF_evidence=NP_190877.1 (RefSeq);NIAS_FLcDNA=002-131-H10;Expression=AK107672;TENOR=Os03t0683900-01;KEGG=Os03t0683900-01
Chr03	irgsp1_rep	five_prime_UTR	27268456	27268578	.	-	.	Parent=Os03t0683900-01
Chr03	irgsp1_rep	CDS	27268426	27268455	.	-	0	Parent=Os03t0683900-01
Chr03	irgsp1_rep	CDS	27268209	27268331	.	-	0	Parent=Os03t0683900-01
Chr03	irgsp1_rep	CDS	27266584	27266841	.	-	0	Parent=Os03t0683900-01
Chr03	irgsp1_rep	three_prime_UTR	27265560	27266583	.	-	.	Parent=Os03t0683900-01
Chr03	irgsp1_rep	mRNA	27269707	27274116	.	-	.	ID=Os03t0684000-01;Name=Os03t0684000-01;Locus_id=Os03g0684000;CGSNL Gene Symbol=GATA18;CGSNL Gene Name=GATA TRANSCRIPTION FACTOR 18;Oryzabase Gene Symbol Synonym(s)=OsTIFY1A%2C TIFY1A%2C OsCCT13%2C OsGATA18%2C OsGATA18a%2C OsGATA18b;Oryzabase Gene Name Synonym(s)=TIFY GENE 1A%2C TIFY-DOMAIN PROTEIN 1A%2C CCT domain-containing gene 13%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 13%2C CCT domain protein 13%2C GATA transcription factor 18%2C GATA factor 18;Note=Similar to GATA transcription factor 1 (AtGATA-1).;Transcript_evidence=AK105025 (DDBJ%2C Best hit);ORF_evidence=NP_001149566.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Zinc finger%2C GATA-type (IPR000679),Tify (IPR010399),CCT domain (IPR010402),Zinc finger%2C NHR/GATA-type (IPR013088);NIAS_FLcDNA=001-011-G08;Oryzabase=15739;Expression=AK105025;TENOR=Os03t0684000-01;KEGG=Os03t0684000-01
Chr03	irgsp1_rep	five_prime_UTR	27273994	27274116	.	-	.	Parent=Os03t0684000-01
Chr03	irgsp1_rep	CDS	27273697	27273993	.	-	0	Parent=Os03t0684000-01
Chr03	irgsp1_rep	CDS	27272598	27272684	.	-	0	Parent=Os03t0684000-01
Chr03	irgsp1_rep	CDS	27272377	27272513	.	-	0	Parent=Os03t0684000-01
Chr03	irgsp1_rep	CDS	27271346	27271465	.	-	1	Parent=Os03t0684000-01
Chr03	irgsp1_rep	CDS	27271147	27271252	.	-	1	Parent=Os03t0684000-01
Chr03	irgsp1_rep	CDS	27270406	27270465	.	-	0	Parent=Os03t0684000-01
Chr03	irgsp1_rep	CDS	27270239	27270327	.	-	0	Parent=Os03t0684000-01
Chr03	irgsp1_rep	CDS	27270100	27270163	.	-	1	Parent=Os03t0684000-01
Chr03	irgsp1_rep	three_prime_UTR	27269707	27270099	.	-	.	Parent=Os03t0684000-01
Chr03	irgsp1_rep	mRNA	27276422	27282271	.	-	.	ID=Os03t0684100-01;Name=Os03t0684100-01;Locus_id=Os03g0684100;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK120860 (DDBJ%2C Best hit);ORF_evidence=B9FAM5 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023024G08;Expression=AK120860;TENOR=Os03t0684100-01;KEGG=Os03t0684100-01
Chr03	irgsp1_rep	five_prime_UTR	27282178	27282271	.	-	.	Parent=Os03t0684100-01
Chr03	irgsp1_rep	CDS	27281677	27282177	.	-	0	Parent=Os03t0684100-01
Chr03	irgsp1_rep	CDS	27281058	27281152	.	-	0	Parent=Os03t0684100-01
Chr03	irgsp1_rep	CDS	27280797	27280938	.	-	1	Parent=Os03t0684100-01
Chr03	irgsp1_rep	CDS	27280301	27280366	.	-	0	Parent=Os03t0684100-01
Chr03	irgsp1_rep	CDS	27280070	27280209	.	-	0	Parent=Os03t0684100-01
Chr03	irgsp1_rep	CDS	27279178	27279304	.	-	1	Parent=Os03t0684100-01
Chr03	irgsp1_rep	CDS	27278346	27278494	.	-	0	Parent=Os03t0684100-01
Chr03	irgsp1_rep	CDS	27277805	27277940	.	-	1	Parent=Os03t0684100-01
Chr03	irgsp1_rep	CDS	27277369	27277453	.	-	0	Parent=Os03t0684100-01
Chr03	irgsp1_rep	CDS	27276984	27277255	.	-	2	Parent=Os03t0684100-01
Chr03	irgsp1_rep	CDS	27276693	27276842	.	-	0	Parent=Os03t0684100-01
Chr03	irgsp1_rep	three_prime_UTR	27276422	27276692	.	-	.	Parent=Os03t0684100-01
Chr03	irgsp1_rep	mRNA	27283074	27286148	.	+	.	ID=Os03t0684300-01;Name=Os03t0684300-01;Locus_id=Os03g0684300;Note=Nucleic acid binding%2C OB-fold%2C tRNA/helicase-type domain containing protein.;Transcript_evidence=AK102497 (DDBJ%2C Best hit);ORF_evidence=Q9AUK3 (UniProt);NIAS_FLcDNA=J033095A21;Expression=AK102497;TENOR=Os03t0684300-01;KEGG=Os03t0684300-01
Chr03	irgsp1_rep	five_prime_UTR	27283074	27283138	.	+	.	Parent=Os03t0684300-01
Chr03	irgsp1_rep	CDS	27283139	27283345	.	+	0	Parent=Os03t0684300-01
Chr03	irgsp1_rep	CDS	27283421	27283541	.	+	0	Parent=Os03t0684300-01
Chr03	irgsp1_rep	CDS	27284051	27284124	.	+	2	Parent=Os03t0684300-01
Chr03	irgsp1_rep	CDS	27285750	27285875	.	+	0	Parent=Os03t0684300-01
Chr03	irgsp1_rep	three_prime_UTR	27285876	27286148	.	+	.	Parent=Os03t0684300-01
Chr03	irgsp1_rep	mRNA	27287853	27294356	.	+	.	ID=Os03t0684400-01;Name=Os03t0684400-01;Locus_id=Os03g0684400;RAP-DB Gene Symbol Synonym(s)=OsMGT3;RAP-DB Gene Name Synonym(s)=Mg transporter 3;Oryzabase Gene Symbol Synonym(s)=OsMRS2-6;Oryzabase Gene Name Synonym(s)=MRS2/MGT family member 6;Note=Magnesium transporter%2C Facilitation of diel magnesium fluctuations in chloroplasts%2C Regulation of Rubisco activity for efficient photosynthesis;Transcript_evidence=AK100086;ORF_evidence=Q9AUK4;GO=Biological Process: metal ion transport (GO:0030001),Biological Process: transmembrane transport (GO:0055085),Molecular Function: metal ion transmembrane transporter activity (GO:0046873),Cellular Component: membrane (GO:0016020);InterPro=Mg2+ transporter protein%2C CorA-like/Zinc transport protein ZntB (IPR002523),Magnesium transporter MRS2-like (IPR039204);NIAS_FLcDNA=J023003B15;Manual Curation=June 24%2C 2020;Literature_PMID=32541951;Oryzabase=14377;Expression=AK100086;TENOR=Os03t0684400-01;KEGG=Os03t0684400-01;Subcellular location=chloroplast envelope (GO:0009941)
Chr03	irgsp1_rep	five_prime_UTR	27287853	27288019	.	+	.	Parent=Os03t0684400-01
Chr03	irgsp1_rep	CDS	27288020	27288457	.	+	0	Parent=Os03t0684400-01
Chr03	irgsp1_rep	CDS	27289205	27289277	.	+	0	Parent=Os03t0684400-01
Chr03	irgsp1_rep	CDS	27289479	27289549	.	+	2	Parent=Os03t0684400-01
Chr03	irgsp1_rep	CDS	27290085	27290170	.	+	0	Parent=Os03t0684400-01
Chr03	irgsp1_rep	CDS	27290271	27290361	.	+	1	Parent=Os03t0684400-01
Chr03	irgsp1_rep	CDS	27290810	27290878	.	+	0	Parent=Os03t0684400-01
Chr03	irgsp1_rep	CDS	27291610	27291690	.	+	0	Parent=Os03t0684400-01
Chr03	irgsp1_rep	CDS	27291767	27291932	.	+	0	Parent=Os03t0684400-01
Chr03	irgsp1_rep	CDS	27292121	27292166	.	+	2	Parent=Os03t0684400-01
Chr03	irgsp1_rep	CDS	27292244	27292324	.	+	1	Parent=Os03t0684400-01
Chr03	irgsp1_rep	CDS	27293594	27293676	.	+	1	Parent=Os03t0684400-01
Chr03	irgsp1_rep	CDS	27293793	27293836	.	+	2	Parent=Os03t0684400-01
Chr03	irgsp1_rep	CDS	27293933	27294028	.	+	0	Parent=Os03t0684400-01
Chr03	irgsp1_rep	three_prime_UTR	27294029	27294356	.	+	.	Parent=Os03t0684400-01
Chr03	irgsp1_rep	mRNA	27297348	27300251	.	+	.	ID=Os03t0684500-01;Name=Os03t0684500-01;Locus_id=Os03g0684500;CGSNL Gene Symbol=GINT2;CGSNL Gene Name=GLUCOSAMINE INOSITOLPHOSPHORYLCERAMIDE TRANSFERASE 2;Oryzabase Gene Symbol Synonym(s)=OsGINT2;Oryzabase Gene Name Synonym(s)=GLUCOSAMINE INOSITOLPHOSPHORYLCERAMIDE TRANSFERASE2;Note=Similar to glycosyltransferase family protein 47.;Transcript_evidence=AK288947 (DDBJ%2C Best hit);ORF_evidence=XP_002871098.1 (RefSeq);GO=Cellular Component: intrinsic to endoplasmic reticulum membrane (GO:0031227),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=EXTL2%2C alpha-1%2C4-N-acetylhexosaminyltransferase (IPR015338),Glycosyl hydrolase family 43%2C five-bladed beta-propellor domain (IPR023296);NIAS_FLcDNA=J090083I08;Oryzabase=21898;TENOR=Os03t0684500-01;KEGG=Os03t0684500-01
Chr03	irgsp1_rep	five_prime_UTR	27297348	27297403	.	+	.	Parent=Os03t0684500-01
Chr03	irgsp1_rep	CDS	27297404	27297658	.	+	0	Parent=Os03t0684500-01
Chr03	irgsp1_rep	CDS	27297781	27297903	.	+	0	Parent=Os03t0684500-01
Chr03	irgsp1_rep	CDS	27298173	27298340	.	+	0	Parent=Os03t0684500-01
Chr03	irgsp1_rep	CDS	27298430	27300109	.	+	0	Parent=Os03t0684500-01
Chr03	irgsp1_rep	three_prime_UTR	27300110	27300251	.	+	.	Parent=Os03t0684500-01
Chr03	irgsp1_rep	mRNA	27300727	27302989	.	-	.	ID=Os03t0684700-01;Name=Os03t0684700-01;Locus_id=Os03g0684700;Note=HPP family protein.;Transcript_evidence=AK068538 (DDBJ%2C Best hit);ORF_evidence=NP_001150258.1 (RefSeq);InterPro=HPP (IPR007065);NIAS_FLcDNA=J013152H14;Expression=AK068538;TENOR=Os03t0684700-01;KEGG=Os03t0684700-01
Chr03	irgsp1_rep	five_prime_UTR	27302967	27302989	.	-	.	Parent=Os03t0684700-01
Chr03	irgsp1_rep	CDS	27302645	27302966	.	-	0	Parent=Os03t0684700-01
Chr03	irgsp1_rep	CDS	27302232	27302365	.	-	2	Parent=Os03t0684700-01
Chr03	irgsp1_rep	CDS	27301483	27301630	.	-	0	Parent=Os03t0684700-01
Chr03	irgsp1_rep	CDS	27301234	27301340	.	-	2	Parent=Os03t0684700-01
Chr03	irgsp1_rep	CDS	27301100	27301141	.	-	0	Parent=Os03t0684700-01
Chr03	irgsp1_rep	three_prime_UTR	27300727	27301099	.	-	.	Parent=Os03t0684700-01
Chr03	irgsp1_rep	mRNA	27302095	27303953	.	+	.	ID=Os03t0684800-01;Name=Os03t0684800-01;Locus_id=Os03g0684800;Note=Conserved hypothetical protein.;Transcript_evidence=AK107039 (DDBJ%2C Best hit);ORF_evidence=Q9AUK7 (UniProt);NIAS_FLcDNA=002-121-B12;TENOR=Os03t0684800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	27302095	27302401	.	+	.	Parent=Os03t0684800-01
Chr03	irgsp1_rep	five_prime_UTR	27302537	27303080	.	+	.	Parent=Os03t0684800-01
Chr03	irgsp1_rep	CDS	27303081	27303548	.	+	0	Parent=Os03t0684800-01
Chr03	irgsp1_rep	three_prime_UTR	27303549	27303953	.	+	.	Parent=Os03t0684800-01
Chr03	irgsp1_rep	mRNA	27309857	27312902	.	+	.	ID=Os03t0685000-01;Name=Os03t0685000-01;Locus_id=Os03g0685000;RAP-DB Gene Symbol Synonym(s)=OsFdC2%2C OsHDY1;RAP-DB Gene Name Synonym(s)=ferredoxin-like protein with C-terminal extension 2%2C heading date delay and yellowish leaf 1;CGSNL Gene Symbol=HDY1;CGSNL Gene Name=HEADING DATE DELAY AND YELLOWISH LEAF 1;Oryzabase Gene Symbol Synonym(s)=OsFdC2%2C FdC2%2C OsHDY1;Oryzabase Gene Name Synonym(s)=ferredoxin-like protein with C-terminal extension 2%2C Ferredoxin C2;Note=Ferredoxin-like protein%2C Photosynthetic rate%2C Heading date%2C Chloroplast development;Transcript_evidence=AK059896,AK098989,AK099303;ORF_evidence=Q10F16;GO=Biological Process: electron transport chain (GO:0022900),Molecular Function: electron transfer activity (GO:0009055),Molecular Function: iron-sulfur cluster binding (GO:0051536),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=Beta-grasp domain superfamily (IPR012675),2Fe-2S ferredoxin-like superfamily (IPR036010),Ferredoxin [2Fe-2S]%2C plant (IPR010241),2Fe-2S ferredoxin-type iron-sulfur binding domain (IPR001041);NIAS_FLcDNA=006-208-F05,J013094G16,J023143H16;Manual Curation=December 26%2C 2018;Literature_PMID=26598971,26259181;Oryzabase=19957;TENOR=Os03t0685000-01;Subcellular location=chloroplast (GO:0009507)
Chr03	irgsp1_rep	five_prime_UTR	27309857	27309954	.	+	.	Parent=Os03t0685000-01
Chr03	irgsp1_rep	CDS	27309955	27309980	.	+	0	Parent=Os03t0685000-01
Chr03	irgsp1_rep	CDS	27310068	27310281	.	+	1	Parent=Os03t0685000-01
Chr03	irgsp1_rep	CDS	27310383	27310446	.	+	0	Parent=Os03t0685000-01
Chr03	irgsp1_rep	CDS	27311392	27311480	.	+	2	Parent=Os03t0685000-01
Chr03	irgsp1_rep	CDS	27311991	27312057	.	+	0	Parent=Os03t0685000-01
Chr03	irgsp1_rep	CDS	27312192	27312238	.	+	2	Parent=Os03t0685000-01
Chr03	irgsp1_rep	CDS	27312438	27312482	.	+	0	Parent=Os03t0685000-01
Chr03	irgsp1_rep	three_prime_UTR	27312483	27312497	.	+	.	Parent=Os03t0685000-01
Chr03	irgsp1_rep	three_prime_UTR	27312592	27312902	.	+	.	Parent=Os03t0685000-01
Chr03	irgsp1_rep	mRNA	27314277	27316173	.	+	.	ID=Os03t0685100-01;Name=Os03t0685100-01;Locus_id=Os03g0685100;Note=tRNA/rRNA methyltransferase%2C SpoU domain containing protein.;Transcript_evidence=AK059852 (DDBJ%2C Best hit);ORF_evidence=B6TZF3 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Molecular Function: RNA binding (GO:0003723),Molecular Function: RNA methyltransferase activity (GO:0008173);InterPro=tRNA/rRNA methyltransferase%2C SpoU (IPR001537);NIAS_FLcDNA=006-206-G10;Expression=AK059852;TENOR=Os03t0685100-01;KEGG=Os03t0685100-01
Chr03	irgsp1_rep	five_prime_UTR	27314277	27314304	.	+	.	Parent=Os03t0685100-01
Chr03	irgsp1_rep	CDS	27314305	27314585	.	+	0	Parent=Os03t0685100-01
Chr03	irgsp1_rep	CDS	27314684	27314963	.	+	1	Parent=Os03t0685100-01
Chr03	irgsp1_rep	CDS	27315141	27315191	.	+	0	Parent=Os03t0685100-01
Chr03	irgsp1_rep	CDS	27315716	27316126	.	+	0	Parent=Os03t0685100-01
Chr03	irgsp1_rep	three_prime_UTR	27316127	27316173	.	+	.	Parent=Os03t0685100-01
Chr03	irgsp1_rep	mRNA	27316632	27322394	.	-	.	ID=Os03t0685200-01;Name=Os03t0685200-01;Locus_id=Os03g0685200;Note=Non-protein coding transcript.;Transcript_evidence=AK288434 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090033J09;TENOR=Os03t0685200-01
Chr03	irgsp1_rep	exon	27316632	27322394	.	-	.	Parent=Os03t0685200-01
Chr03	irgsp1_rep	mRNA	27334203	27337889	.	+	.	ID=Os03t0685300-01;Name=Os03t0685300-01;Locus_id=Os03g0685300;Note=Glutamine amidotransferase class-I domain containing protein.;Transcript_evidence=AK071046 (DDBJ%2C Best hit);ORF_evidence=NP_001150563.1 (RefSeq);InterPro=Glutamine amidotransferase type 1 (IPR017926);NIAS_FLcDNA=J023079K17;Expression=AK071046;TENOR=Os03t0685300-01;KEGG=Os03t0685300-01
Chr03	irgsp1_rep	five_prime_UTR	27334203	27334313	.	+	.	Parent=Os03t0685300-01
Chr03	irgsp1_rep	CDS	27334314	27334703	.	+	0	Parent=Os03t0685300-01
Chr03	irgsp1_rep	CDS	27337073	27337228	.	+	0	Parent=Os03t0685300-01
Chr03	irgsp1_rep	CDS	27337323	27337490	.	+	0	Parent=Os03t0685300-01
Chr03	irgsp1_rep	CDS	27337581	27337748	.	+	0	Parent=Os03t0685300-01
Chr03	irgsp1_rep	three_prime_UTR	27337749	27337889	.	+	.	Parent=Os03t0685300-01
Chr03	irgsp1_rep	mRNA	27343321	27346707	.	-	.	ID=Os03t0685500-01;Name=Os03t0685500-01;Locus_id=Os03g0685500;Note=CHCH domain containing protein.;Transcript_evidence=AK062080 (DDBJ%2C Best hit),AK120726 (DDBJ%2C Best hit);ORF_evidence=B6TU93 (UniProt);InterPro=MTCP1 (IPR009069),CHCH (IPR010625);NIAS_FLcDNA=001-044-F09,J023002L22;Expression=AK062080;TENOR=Os03t0685500-01;KEGG=Os03t0685500-01
Chr03	irgsp1_rep	five_prime_UTR	27346612	27346707	.	-	.	Parent=Os03t0685500-01
Chr03	irgsp1_rep	CDS	27346593	27346611	.	-	0	Parent=Os03t0685500-01
Chr03	irgsp1_rep	CDS	27344593	27344646	.	-	2	Parent=Os03t0685500-01
Chr03	irgsp1_rep	CDS	27344321	27344401	.	-	2	Parent=Os03t0685500-01
Chr03	irgsp1_rep	CDS	27344057	27344229	.	-	2	Parent=Os03t0685500-01
Chr03	irgsp1_rep	CDS	27343596	27343685	.	-	0	Parent=Os03t0685500-01
Chr03	irgsp1_rep	three_prime_UTR	27343321	27343595	.	-	.	Parent=Os03t0685500-01
Chr03	irgsp1_rep	mRNA	27347249	27351216	.	-	.	ID=Os03t0685600-01;Name=Os03t0685600-01;Locus_id=Os03g0685600;Oryzabase Gene Symbol Synonym(s)=OsWD40-82;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK111863 (DDBJ%2C Best hit);ORF_evidence=B8APK8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J033024B20;Oryzabase=10763;Expression=AK111863;TENOR=Os03t0685600-01;KEGG=Os03t0685600-01
Chr03	irgsp1_rep	five_prime_UTR	27351055	27351216	.	-	.	Parent=Os03t0685600-01
Chr03	irgsp1_rep	CDS	27350952	27351054	.	-	0	Parent=Os03t0685600-01
Chr03	irgsp1_rep	CDS	27350824	27350865	.	-	2	Parent=Os03t0685600-01
Chr03	irgsp1_rep	CDS	27349988	27350035	.	-	2	Parent=Os03t0685600-01
Chr03	irgsp1_rep	CDS	27349647	27349766	.	-	2	Parent=Os03t0685600-01
Chr03	irgsp1_rep	CDS	27348995	27349140	.	-	2	Parent=Os03t0685600-01
Chr03	irgsp1_rep	CDS	27348714	27348861	.	-	0	Parent=Os03t0685600-01
Chr03	irgsp1_rep	CDS	27348426	27348509	.	-	2	Parent=Os03t0685600-01
Chr03	irgsp1_rep	CDS	27348234	27348349	.	-	2	Parent=Os03t0685600-01
Chr03	irgsp1_rep	CDS	27348039	27348097	.	-	0	Parent=Os03t0685600-01
Chr03	irgsp1_rep	CDS	27347867	27347957	.	-	1	Parent=Os03t0685600-01
Chr03	irgsp1_rep	CDS	27347516	27347743	.	-	0	Parent=Os03t0685600-01
Chr03	irgsp1_rep	three_prime_UTR	27347249	27347515	.	-	.	Parent=Os03t0685600-01
Chr03	irgsp1_rep	mRNA	27351629	27358179	.	+	.	ID=Os03t0685700-01;Name=Os03t0685700-01;Locus_id=Os03g0685700;Note=Conserved hypothetical protein.;Transcript_evidence=AK066043 (DDBJ%2C Best hit);ORF_evidence=B9FAN3 (UniProt);NIAS_FLcDNA=J013048F08;TENOR=Os03t0685700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	27351629	27351630	.	+	.	Parent=Os03t0685700-01
Chr03	irgsp1_rep	CDS	27351631	27351751	.	+	0	Parent=Os03t0685700-01
Chr03	irgsp1_rep	CDS	27351865	27351935	.	+	2	Parent=Os03t0685700-01
Chr03	irgsp1_rep	CDS	27354346	27354423	.	+	0	Parent=Os03t0685700-01
Chr03	irgsp1_rep	three_prime_UTR	27354424	27354466	.	+	.	Parent=Os03t0685700-01
Chr03	irgsp1_rep	three_prime_UTR	27354548	27354591	.	+	.	Parent=Os03t0685700-01
Chr03	irgsp1_rep	three_prime_UTR	27355835	27356046	.	+	.	Parent=Os03t0685700-01
Chr03	irgsp1_rep	three_prime_UTR	27356145	27358179	.	+	.	Parent=Os03t0685700-01
Chr03	irgsp1_rep	mRNA	27363514	27364456	.	+	.	ID=Os03t0685750-00;Name=Os03t0685750-00;Locus_id=Os03g0685750;Note=Hypothetical conserved gene.;Transcript_evidence=CT833489 (DDBJ%2C Best hit);ORF_evidence=NP_195008.5 (RefSeq);TENOR=Os03t0685750-00;KEGG=Os03t0685750-00
Chr03	irgsp1_rep	five_prime_UTR	27363514	27363514	.	+	.	Parent=Os03t0685750-00
Chr03	irgsp1_rep	CDS	27363515	27363790	.	+	0	Parent=Os03t0685750-00
Chr03	irgsp1_rep	CDS	27363870	27363939	.	+	0	Parent=Os03t0685750-00
Chr03	irgsp1_rep	CDS	27364031	27364281	.	+	2	Parent=Os03t0685750-00
Chr03	irgsp1_rep	three_prime_UTR	27364282	27364324	.	+	.	Parent=Os03t0685750-00
Chr03	irgsp1_rep	three_prime_UTR	27364331	27364456	.	+	.	Parent=Os03t0685750-00
Chr03	irgsp1_rep	mRNA	27363048	27364266	.	-	.	ID=Os03t0685800-01;Name=Os03t0685800-01;Locus_id=Os03g0685800;Note=Hypothetical protein.;Transcript_evidence=AK058278 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-013-C08;Expression=AK058278;TENOR=Os03t0685800-01;KEGG=Os03t0685800-01
Chr03	irgsp1_rep	five_prime_UTR	27364165	27364266	.	-	.	Parent=Os03t0685800-01
Chr03	irgsp1_rep	CDS	27363844	27364164	.	-	0	Parent=Os03t0685800-01
Chr03	irgsp1_rep	three_prime_UTR	27363048	27363843	.	-	.	Parent=Os03t0685800-01
Chr03	irgsp1_rep	mRNA	27364921	27369030	.	+	.	ID=Os03t0685900-01;Name=Os03t0685900-01;Locus_id=Os03g0685900;Note=Similar to F1N21.17.;Transcript_evidence=AK062981 (DDBJ%2C Best hit);ORF_evidence=XP_002887116.1 (RefSeq);NIAS_FLcDNA=001-109-F03;Expression=AK062981;TENOR=Os03t0685900-01;KEGG=Os03t0685900-01
Chr03	irgsp1_rep	five_prime_UTR	27364921	27364957	.	+	.	Parent=Os03t0685900-01
Chr03	irgsp1_rep	CDS	27364958	27365242	.	+	0	Parent=Os03t0685900-01
Chr03	irgsp1_rep	three_prime_UTR	27365243	27365265	.	+	.	Parent=Os03t0685900-01
Chr03	irgsp1_rep	three_prime_UTR	27368793	27369030	.	+	.	Parent=Os03t0685900-01
Chr03	irgsp1_rep	mRNA	27370058	27370791	.	-	.	ID=Os03t0686050-00;Name=Os03t0686050-00;Locus_id=Os03g0686050;Note=Similar to BTB/POZ domain containing protein.;Transcript_evidence=AK249073 (DDBJ);ORF_evidence=Q10F07 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069);TENOR=Os03t0686050-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	27370354	27370791	.	-	0	Parent=Os03t0686050-00
Chr03	irgsp1_rep	three_prime_UTR	27370058	27370353	.	-	.	Parent=Os03t0686050-00
Chr03	irgsp1_rep	mRNA	27371197	27372872	.	-	.	ID=Os03t0686100-01;Name=Os03t0686100-01;Locus_id=Os03g0686100;Note=Conserved hypothetical protein.;Transcript_evidence=AK106585 (DDBJ%2C Best hit);ORF_evidence=B8BD75 (UniProt);NIAS_FLcDNA=002-111-E11;TENOR=Os03t0686100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	27372311	27372872	.	-	.	Parent=Os03t0686100-01
Chr03	irgsp1_rep	five_prime_UTR	27372171	27372214	.	-	.	Parent=Os03t0686100-01
Chr03	irgsp1_rep	CDS	27371988	27372170	.	-	0	Parent=Os03t0686100-01
Chr03	irgsp1_rep	three_prime_UTR	27371197	27371987	.	-	.	Parent=Os03t0686100-01
Chr03	irgsp1_rep	mRNA	27374837	27378363	.	+	.	ID=Os03t0686201-01;Name=Os03t0686201-01;Locus_id=Os03g0686201;Note=Hypothetical gene.;Transcript_evidence=AK240696 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J043010A04;TENOR=Os03t0686201-01;KEGG=Os03t0686201-01
Chr03	irgsp1_rep	five_prime_UTR	27374837	27375335	.	+	.	Parent=Os03t0686201-01
Chr03	irgsp1_rep	CDS	27375336	27375401	.	+	0	Parent=Os03t0686201-01
Chr03	irgsp1_rep	CDS	27375491	27375573	.	+	0	Parent=Os03t0686201-01
Chr03	irgsp1_rep	CDS	27375710	27375790	.	+	1	Parent=Os03t0686201-01
Chr03	irgsp1_rep	CDS	27375875	27375923	.	+	1	Parent=Os03t0686201-01
Chr03	irgsp1_rep	three_prime_UTR	27375924	27375931	.	+	.	Parent=Os03t0686201-01
Chr03	irgsp1_rep	three_prime_UTR	27376013	27376069	.	+	.	Parent=Os03t0686201-01
Chr03	irgsp1_rep	three_prime_UTR	27376140	27376239	.	+	.	Parent=Os03t0686201-01
Chr03	irgsp1_rep	three_prime_UTR	27376317	27376387	.	+	.	Parent=Os03t0686201-01
Chr03	irgsp1_rep	three_prime_UTR	27376464	27376604	.	+	.	Parent=Os03t0686201-01
Chr03	irgsp1_rep	three_prime_UTR	27376694	27376900	.	+	.	Parent=Os03t0686201-01
Chr03	irgsp1_rep	three_prime_UTR	27376987	27377139	.	+	.	Parent=Os03t0686201-01
Chr03	irgsp1_rep	three_prime_UTR	27377479	27377649	.	+	.	Parent=Os03t0686201-01
Chr03	irgsp1_rep	three_prime_UTR	27377772	27377852	.	+	.	Parent=Os03t0686201-01
Chr03	irgsp1_rep	three_prime_UTR	27377924	27377977	.	+	.	Parent=Os03t0686201-01
Chr03	irgsp1_rep	three_prime_UTR	27378077	27378191	.	+	.	Parent=Os03t0686201-01
Chr03	irgsp1_rep	three_prime_UTR	27378339	27378363	.	+	.	Parent=Os03t0686201-01
Chr03	irgsp1_rep	mRNA	27374843	27388067	.	-	.	ID=Os03t0686300-00;Name=Os03t0686300-00;Locus_id=Os03g0686300;Note=Similar to unconventional myosin heavy chain.;Transcript_evidence=AF104924 (DDBJ);ORF_evidence=NP_001104925.1 (RefSeq);GO=Cellular Component: myosin complex (GO:0016459),Molecular Function: motor activity (GO:0003774),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=IQ motif%2C EF-hand binding site (IPR000048),Myosin head%2C motor domain (IPR001609),Dilute (IPR002710),Myosin%2C N-terminal%2C SH3-like (IPR004009),Dil domain (IPR018444);Oryzabase=23568;TENOR=Os03t0686300-00;KEGG=Os03t0686300-00
Chr03	irgsp1_rep	five_prime_UTR	27387721	27388067	.	-	.	Parent=Os03t0686300-00
Chr03	irgsp1_rep	CDS	27387652	27387720	.	-	0	Parent=Os03t0686300-00
Chr03	irgsp1_rep	CDS	27385572	27385700	.	-	0	Parent=Os03t0686300-00
Chr03	irgsp1_rep	CDS	27385199	27385342	.	-	0	Parent=Os03t0686300-00
Chr03	irgsp1_rep	CDS	27384967	27385112	.	-	0	Parent=Os03t0686300-00
Chr03	irgsp1_rep	CDS	27384701	27384857	.	-	1	Parent=Os03t0686300-00
Chr03	irgsp1_rep	CDS	27384546	27384604	.	-	0	Parent=Os03t0686300-00
Chr03	irgsp1_rep	CDS	27384271	27384430	.	-	1	Parent=Os03t0686300-00
Chr03	irgsp1_rep	CDS	27384010	27384159	.	-	0	Parent=Os03t0686300-00
Chr03	irgsp1_rep	CDS	27383781	27383917	.	-	0	Parent=Os03t0686300-00
Chr03	irgsp1_rep	CDS	27383550	27383696	.	-	1	Parent=Os03t0686300-00
Chr03	irgsp1_rep	CDS	27383351	27383452	.	-	1	Parent=Os03t0686300-00
Chr03	irgsp1_rep	CDS	27383204	27383261	.	-	1	Parent=Os03t0686300-00
Chr03	irgsp1_rep	CDS	27383019	27383120	.	-	0	Parent=Os03t0686300-00
Chr03	irgsp1_rep	CDS	27382167	27382201	.	-	0	Parent=Os03t0686300-00
Chr03	irgsp1_rep	CDS	27381885	27382011	.	-	1	Parent=Os03t0686300-00
Chr03	irgsp1_rep	CDS	27381629	27381799	.	-	0	Parent=Os03t0686300-00
Chr03	irgsp1_rep	CDS	27380802	27380933	.	-	0	Parent=Os03t0686300-00
Chr03	irgsp1_rep	CDS	27380624	27380733	.	-	0	Parent=Os03t0686300-00
Chr03	irgsp1_rep	CDS	27380463	27380523	.	-	1	Parent=Os03t0686300-00
Chr03	irgsp1_rep	CDS	27380109	27380286	.	-	0	Parent=Os03t0686300-00
Chr03	irgsp1_rep	CDS	27379813	27380018	.	-	2	Parent=Os03t0686300-00
Chr03	irgsp1_rep	CDS	27379498	27379617	.	-	0	Parent=Os03t0686300-00
Chr03	irgsp1_rep	CDS	27379315	27379413	.	-	0	Parent=Os03t0686300-00
Chr03	irgsp1_rep	CDS	27379013	27379234	.	-	0	Parent=Os03t0686300-00
Chr03	irgsp1_rep	CDS	27378339	27378478	.	-	0	Parent=Os03t0686300-00
Chr03	irgsp1_rep	CDS	27378077	27378191	.	-	1	Parent=Os03t0686300-00
Chr03	irgsp1_rep	CDS	27377924	27377977	.	-	0	Parent=Os03t0686300-00
Chr03	irgsp1_rep	CDS	27377772	27377852	.	-	0	Parent=Os03t0686300-00
Chr03	irgsp1_rep	CDS	27377479	27377649	.	-	0	Parent=Os03t0686300-00
Chr03	irgsp1_rep	CDS	27376987	27377139	.	-	0	Parent=Os03t0686300-00
Chr03	irgsp1_rep	CDS	27376694	27376900	.	-	0	Parent=Os03t0686300-00
Chr03	irgsp1_rep	CDS	27376464	27376604	.	-	0	Parent=Os03t0686300-00
Chr03	irgsp1_rep	CDS	27376317	27376387	.	-	0	Parent=Os03t0686300-00
Chr03	irgsp1_rep	CDS	27376140	27376239	.	-	1	Parent=Os03t0686300-00
Chr03	irgsp1_rep	CDS	27376013	27376069	.	-	0	Parent=Os03t0686300-00
Chr03	irgsp1_rep	CDS	27375875	27375931	.	-	0	Parent=Os03t0686300-00
Chr03	irgsp1_rep	CDS	27375710	27375790	.	-	0	Parent=Os03t0686300-00
Chr03	irgsp1_rep	CDS	27375491	27375573	.	-	0	Parent=Os03t0686300-00
Chr03	irgsp1_rep	CDS	27375290	27375401	.	-	1	Parent=Os03t0686300-00
Chr03	irgsp1_rep	three_prime_UTR	27374843	27375289	.	-	.	Parent=Os03t0686300-00
Chr03	irgsp1_rep	mRNA	27394687	27395711	.	-	.	ID=Os03t0686500-01;Name=Os03t0686500-01;Locus_id=Os03g0686500;Note=Conserved hypothetical protein.;Transcript_evidence=AK099457 (DDBJ%2C Best hit);ORF_evidence=Q10F05 (UniProt);NIAS_FLcDNA=J013022N15;Expression=AK099457;TENOR=Os03t0686500-01;KEGG=Os03t0686500-01
Chr03	irgsp1_rep	five_prime_UTR	27395394	27395711	.	-	.	Parent=Os03t0686500-01
Chr03	irgsp1_rep	CDS	27395040	27395393	.	-	0	Parent=Os03t0686500-01
Chr03	irgsp1_rep	three_prime_UTR	27394687	27395039	.	-	.	Parent=Os03t0686500-01
Chr03	irgsp1_rep	mRNA	27394697	27395660	.	-	.	ID=Os03t0686500-02;Name=Os03t0686500-02;Locus_id=Os03g0686500;Note=Conserved hypothetical protein.;Transcript_evidence=AK061871 (DDBJ%2C Best hit);ORF_evidence=Q10F05 (UniProt);NIAS_FLcDNA=001-041-A04;Expression=AK061871;TENOR=Os03t0686500-02;KEGG=Os03t0686500-02
Chr03	irgsp1_rep	five_prime_UTR	27395394	27395660	.	-	.	Parent=Os03t0686500-02
Chr03	irgsp1_rep	CDS	27395040	27395393	.	-	0	Parent=Os03t0686500-02
Chr03	irgsp1_rep	three_prime_UTR	27394697	27395039	.	-	.	Parent=Os03t0686500-02
Chr03	irgsp1_rep	mRNA	27397086	27398125	.	+	.	ID=Os03t0686700-01;Name=Os03t0686700-01;Locus_id=Os03g0686700;Note=Conserved hypothetical protein.;Transcript_evidence=AK109359 (DDBJ%2C Best hit);ORF_evidence=B8APL7 (UniProt);NIAS_FLcDNA=006-206-A11;Expression=AK109359;TENOR=Os03t0686700-01;KEGG=Os03t0686700-01
Chr03	irgsp1_rep	five_prime_UTR	27397086	27397604	.	+	.	Parent=Os03t0686700-01
Chr03	irgsp1_rep	CDS	27397605	27397847	.	+	0	Parent=Os03t0686700-01
Chr03	irgsp1_rep	three_prime_UTR	27397848	27398125	.	+	.	Parent=Os03t0686700-01
Chr03	irgsp1_rep	mRNA	27403235	27405730	.	+	.	ID=Os03t0686800-01;Name=Os03t0686800-01;Locus_id=Os03g0686800;Note=Conserved hypothetical protein.;Transcript_evidence=AK287890 (DDBJ%2C Best hit);ORF_evidence=NP_001173591.1 (RefSeq);NIAS_FLcDNA=J065209H13;TENOR=Os03t0686800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	27403235	27403358	.	+	.	Parent=Os03t0686800-01
Chr03	irgsp1_rep	CDS	27403359	27403525	.	+	0	Parent=Os03t0686800-01
Chr03	irgsp1_rep	CDS	27403608	27403781	.	+	1	Parent=Os03t0686800-01
Chr03	irgsp1_rep	CDS	27403895	27403910	.	+	1	Parent=Os03t0686800-01
Chr03	irgsp1_rep	three_prime_UTR	27403911	27403980	.	+	.	Parent=Os03t0686800-01
Chr03	irgsp1_rep	three_prime_UTR	27404112	27405730	.	+	.	Parent=Os03t0686800-01
Chr03	irgsp1_rep	mRNA	27408274	27413223	.	+	.	ID=Os03t0686900-01;Name=Os03t0686900-01;Locus_id=Os03g0686900;RAP-DB Gene Symbol Synonym(s)=FLO6;RAP-DB Gene Name Synonym(s)=FLOURY ENDOSPERM 6%2C FLOURY ENDOSPERM6;CGSNL Gene Symbol=FLO6;CGSNL Gene Name=FLOURY ENDOSPERM 6;Oryzabase Gene Symbol Synonym(s)=OsSIP4%2C SIP4%2C OsFLO6;Oryzabase Gene Name Synonym(s)=FLOURY ENDOSPERM6%2C SKIP interacting protein 4%2C SKIPa-interacting protein 4%2C SKIPa-interacting protein 4;Note=CBM48 domain-containing protein%2C Compound granule formation and starch synthesis;Transcript_evidence=AK287681;ORF_evidence=Q10F03;InterPro=Immunoglobulin E-set (IPR014756),Immunoglobulin-like fold (IPR013783);NIAS_FLcDNA=J065123P12;Manual Curation=January 13%2C 2015;Literature_PMID=24456533;Oryzabase=17866;TENOR=Os03t0686900-01;KEGG=Os03t0686900-01
Chr03	irgsp1_rep	five_prime_UTR	27408274	27408329	.	+	.	Parent=Os03t0686900-01
Chr03	irgsp1_rep	CDS	27408330	27408850	.	+	0	Parent=Os03t0686900-01
Chr03	irgsp1_rep	CDS	27408942	27408995	.	+	1	Parent=Os03t0686900-01
Chr03	irgsp1_rep	CDS	27409089	27409210	.	+	1	Parent=Os03t0686900-01
Chr03	irgsp1_rep	CDS	27410466	27410663	.	+	2	Parent=Os03t0686900-01
Chr03	irgsp1_rep	CDS	27410740	27410975	.	+	2	Parent=Os03t0686900-01
Chr03	irgsp1_rep	CDS	27411511	27411656	.	+	0	Parent=Os03t0686900-01
Chr03	irgsp1_rep	CDS	27411736	27411883	.	+	1	Parent=Os03t0686900-01
Chr03	irgsp1_rep	CDS	27412581	27412649	.	+	0	Parent=Os03t0686900-01
Chr03	irgsp1_rep	CDS	27412726	27412821	.	+	0	Parent=Os03t0686900-01
Chr03	irgsp1_rep	three_prime_UTR	27412822	27413223	.	+	.	Parent=Os03t0686900-01
Chr03	irgsp1_rep	mRNA	27413641	27418774	.	-	.	ID=Os03t0687000-01;Name=Os03t0687000-01;Locus_id=Os03g0687000;CGSNL Gene Symbol=NPF2.4;CGSNL Gene Name=NRT1/PTR FAMILY 2.4;Oryzabase Gene Symbol Synonym(s)=OsNPF2.4%2C OsPTR2%2C PTR2;Oryzabase Gene Name Synonym(s)=NRT1/PTR family 2.4%2C NO3-/peptide transporter family 2.4;Note=Similar to predicted protein.;Transcript_evidence=AK099910 (DDBJ%2C Best hit);ORF_evidence=E0X1U8 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J013116D12;Oryzabase=21367;Expression=AK099910;TENOR=Os03t0687000-01;KEGG=Os03t0687000-01
Chr03	irgsp1_rep	five_prime_UTR	27418686	27418774	.	-	.	Parent=Os03t0687000-01
Chr03	irgsp1_rep	CDS	27418541	27418685	.	-	0	Parent=Os03t0687000-01
Chr03	irgsp1_rep	CDS	27418225	27418442	.	-	2	Parent=Os03t0687000-01
Chr03	irgsp1_rep	CDS	27414726	27415214	.	-	0	Parent=Os03t0687000-01
Chr03	irgsp1_rep	CDS	27413814	27414593	.	-	0	Parent=Os03t0687000-01
Chr03	irgsp1_rep	three_prime_UTR	27413641	27413813	.	-	.	Parent=Os03t0687000-01
Chr03	irgsp1_rep	mRNA	27413550	27418770	.	-	.	ID=Os03t0687000-02;Name=Os03t0687000-02;Locus_id=Os03g0687000;RAP-DB Gene Symbol Synonym(s)=OsNPF2.4%2C NPF2.4%2C OsPTR2%2C PTR2;RAP-DB Gene Name Synonym(s)=NRT1/PTR family 2.4%2C NO3-/peptide transporter family 2.4;CGSNL Gene Symbol=NPF2.4;CGSNL Gene Name=NRT1/PTR FAMILY 2.4;Oryzabase Gene Symbol Synonym(s)=OsNPF2.4%2C OsPTR2%2C PTR2;Oryzabase Gene Name Synonym(s)=NRT1/PTR family 2.4%2C NO3-/peptide transporter family 2.4;Note=Nitrate transporter%2C Peptide transporter%2C osa-miR168a target gene%2C Acquisition and long-distance transport of nitrate%2C Regulation of seed vigor;Transcript_evidence=AK099244,AK065253,AK099218,AK099321,AK104378;ORF_evidence=Q6AVV6;GO=Biological Process: transport (GO:0006810),Molecular Function: transporter activity (GO:0005215),Cellular Component: membrane (GO:0016020);InterPro=Proton-dependent oligopeptide transporter family (IPR000109),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J013116N10,J013002J10,J013083D05,J033020I22,001-035-G11;Manual Curation=September 20%2C 2019;Literature_PMID=30791202,25332358;Oryzabase=21367;TENOR=Os03t0687000-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	27418686	27418770	.	-	.	Parent=Os03t0687000-02
Chr03	irgsp1_rep	CDS	27418541	27418685	.	-	0	Parent=Os03t0687000-02
Chr03	irgsp1_rep	CDS	27418225	27418442	.	-	2	Parent=Os03t0687000-02
Chr03	irgsp1_rep	CDS	27413814	27415214	.	-	0	Parent=Os03t0687000-02
Chr03	irgsp1_rep	three_prime_UTR	27413550	27413813	.	-	.	Parent=Os03t0687000-02
Chr03	irgsp1_rep	mRNA	27413822	27418324	.	+	.	ID=Os03t0687100-00;Name=Os03t0687100-00;Locus_id=Os03g0687100;Note=Hypothetical protein.;Transcript_evidence=tplb0038k08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0687100-00
Chr03	irgsp1_rep	five_prime_UTR	27413822	27413822	.	+	.	Parent=Os03t0687100-00
Chr03	irgsp1_rep	CDS	27413823	27415197	.	+	0	Parent=Os03t0687100-00
Chr03	irgsp1_rep	CDS	27418207	27418229	.	+	2	Parent=Os03t0687100-00
Chr03	irgsp1_rep	three_prime_UTR	27418230	27418324	.	+	.	Parent=Os03t0687100-00
Chr03	irgsp1_rep	mRNA	27431846	27436591	.	-	.	ID=Os03t0687200-01;Name=Os03t0687200-01;Locus_id=Os03g0687200;Note=Conserved hypothetical protein.;Transcript_evidence=AK067324 (DDBJ%2C Best hit);ORF_evidence=B8APM1 (UniProt);NIAS_FLcDNA=J013106E15;Expression=AK067324;TENOR=Os03t0687200-01;KEGG=Os03t0687200-01
Chr03	irgsp1_rep	five_prime_UTR	27436301	27436591	.	-	.	Parent=Os03t0687200-01
Chr03	irgsp1_rep	CDS	27435724	27436300	.	-	0	Parent=Os03t0687200-01
Chr03	irgsp1_rep	CDS	27434655	27434707	.	-	2	Parent=Os03t0687200-01
Chr03	irgsp1_rep	CDS	27433983	27434042	.	-	0	Parent=Os03t0687200-01
Chr03	irgsp1_rep	three_prime_UTR	27433962	27433982	.	-	.	Parent=Os03t0687200-01
Chr03	irgsp1_rep	three_prime_UTR	27431846	27432572	.	-	.	Parent=Os03t0687200-01
Chr03	irgsp1_rep	mRNA	27441058	27441804	.	-	.	ID=Os03t0687400-00;Name=Os03t0687400-00;Locus_id=Os03g0687400;Note=Ribosome-inactivating protein family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001173593.1 (RefSeq);GO=Biological Process: negative regulation of translation (GO:0017148),Molecular Function: rRNA N-glycosylase activity (GO:0030598);InterPro=Ribosome-inactivating protein (IPR001574),Ribosome-inactivating protein%2C subdomain 1 (IPR016138);TENOR=Os03t0687400-00;KEGG=Os03t0687400-00
Chr03	irgsp1_rep	CDS	27441058	27441804	.	-	0	Parent=Os03t0687400-00
Chr03	irgsp1_rep	mRNA	27444695	27445609	.	-	.	ID=Os03t0687700-01;Name=Os03t0687700-01;Locus_id=Os03g0687700;Oryzabase Gene Symbol Synonym(s)=OsEnS-52;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 52;Note=Ribosome-inactivating protein domain containing protein.;Transcript_evidence=AK064673 (DDBJ%2C Best hit),AK119706 (DDBJ%2C Best hit);ORF_evidence=B8APM2 (UniProt);GO=Biological Process: negative regulation of translation (GO:0017148),Molecular Function: rRNA N-glycosylase activity (GO:0030598);InterPro=Ribosome-inactivating protein (IPR001574),Ribosome-inactivating protein%2C subdomain 1 (IPR016138);NIAS_FLcDNA=002-115-E06,002-157-E05;Oryzabase=18378;TENOR=Os03t0687700-01
Chr03	irgsp1_rep	five_prime_UTR	27445574	27445609	.	-	.	Parent=Os03t0687700-01
Chr03	irgsp1_rep	CDS	27444839	27445573	.	-	0	Parent=Os03t0687700-01
Chr03	irgsp1_rep	three_prime_UTR	27444695	27444838	.	-	.	Parent=Os03t0687700-01
Chr03	irgsp1_rep	mRNA	27447672	27448399	.	-	.	ID=Os03t0687800-01;Name=Os03t0687800-01;Locus_id=Os03g0687800;Note=Ribosome-inactivating protein domain containing protein.;Transcript_evidence=AK106820 (DDBJ%2C Best hit);ORF_evidence=Q6AVI4 (UniProt);GO=Biological Process: negative regulation of translation (GO:0017148),Molecular Function: rRNA N-glycosylase activity (GO:0030598);InterPro=Ribosome-inactivating protein (IPR001574);NIAS_FLcDNA=002-116-D08;Expression=AK106820;TENOR=Os03t0687800-01;KEGG=Os03t0687800-01
Chr03	irgsp1_rep	five_prime_UTR	27448398	27448399	.	-	.	Parent=Os03t0687800-01
Chr03	irgsp1_rep	CDS	27447804	27448397	.	-	0	Parent=Os03t0687800-01
Chr03	irgsp1_rep	three_prime_UTR	27447672	27447803	.	-	.	Parent=Os03t0687800-01
Chr03	irgsp1_rep	mRNA	27448811	27449258	.	-	.	ID=Os03t0687900-01;Name=Os03t0687900-01;Locus_id=Os03g0687900;Note=Conserved hypothetical protein.;Transcript_evidence=AK062783 (DDBJ%2C Best hit);ORF_evidence=Q6AVI4 (UniProt);NIAS_FLcDNA=001-107-B05;Expression=AK062783;TENOR=Os03t0687900-01;KEGG=Os03t0687900-01
Chr03	irgsp1_rep	CDS	27449055	27449258	.	-	0	Parent=Os03t0687900-01
Chr03	irgsp1_rep	three_prime_UTR	27448811	27449054	.	-	.	Parent=Os03t0687900-01
Chr03	irgsp1_rep	mRNA	27450249	27451130	.	-	.	ID=Os03t0688000-00;Name=Os03t0688000-00;Locus_id=Os03g0688000;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001050942.2 (RefSeq);GO=Biological Process: negative regulation of translation (GO:0017148),Molecular Function: rRNA N-glycosylase activity (GO:0030598);InterPro=Ribosome-inactivating protein (IPR001574),Ribosome-inactivating protein%2C subdomain 1 (IPR016138);TENOR=Os03t0688000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	27450249	27451130	.	-	0	Parent=Os03t0688000-00
Chr03	irgsp1_rep	mRNA	27458294	27463536	.	+	.	ID=Os03t0688200-01;Name=Os03t0688200-01;Locus_id=Os03g0688200;Note=Conserved hypothetical protein.;Transcript_evidence=AK103539 (DDBJ%2C Best hit);ORF_evidence=B8AQ04 (UniProt);NIAS_FLcDNA=J033132C02;Expression=AK103539;TENOR=Os03t0688200-01;KEGG=Os03t0688200-01
Chr03	irgsp1_rep	five_prime_UTR	27458294	27458356	.	+	.	Parent=Os03t0688200-01
Chr03	irgsp1_rep	CDS	27458357	27459044	.	+	0	Parent=Os03t0688200-01
Chr03	irgsp1_rep	CDS	27459300	27459472	.	+	2	Parent=Os03t0688200-01
Chr03	irgsp1_rep	CDS	27462721	27462795	.	+	0	Parent=Os03t0688200-01
Chr03	irgsp1_rep	CDS	27462869	27463333	.	+	0	Parent=Os03t0688200-01
Chr03	irgsp1_rep	three_prime_UTR	27463334	27463536	.	+	.	Parent=Os03t0688200-01
Chr03	irgsp1_rep	mRNA	27460603	27461221	.	+	.	ID=Os03t0688250-00;Name=Os03t0688250-00;Locus_id=Os03g0688250;Note=Non-protein coding transcript.;Transcript_evidence=CT835205 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os03t0688250-00
Chr03	irgsp1_rep	exon	27460603	27461221	.	+	.	Parent=Os03t0688250-00
Chr03	irgsp1_rep	mRNA	27467413	27472746	.	+	.	ID=Os03t0688300-01;Name=Os03t0688300-01;Locus_id=Os03g0688300;RAP-DB Gene Symbol Synonym(s)=CDPK9%2C OsCDPK9%2C OsCPK9;RAP-DB Gene Name Synonym(s)=CALCIUM-DEPENDENT PROTEIN KINASE 9%2C calcium-dependent protein kinase;CGSNL Gene Symbol=CDPK9;CGSNL Gene Name=CALCIUM-DEPENDENT PROTEIN KINASE 9;Oryzabase Gene Symbol Synonym(s)=OsCDPK9%2C OsCPK9%2C CPK9;Oryzabase Gene Name Synonym(s)=calcium-dependent protein kinase;Note=Calcium-dependent protein kinase%2C Positive regulator of drought stress tolerance and spikelet fertility;Transcript_evidence=AK105102;ORF_evidence=Q6AVI8;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine/threonine/dual specificity protein kinase%2C catalytic  domain (IPR002290),EF-hand domain (IPR002048),EF-hand domain pair (IPR011992),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271),EF-Hand 1%2C calcium-binding site (IPR018247);NIAS_FLcDNA=001-100-D05;Manual Curation=June 4%2C 2014;Literature_PMID=24884869,15695435;Oryzabase=8062;TENOR=Os03t0688300-01;KEGG=Os03t0688300-01 (EC:2.7.11.17)
Chr03	irgsp1_rep	five_prime_UTR	27467413	27467550	.	+	.	Parent=Os03t0688300-01
Chr03	irgsp1_rep	CDS	27467551	27468316	.	+	0	Parent=Os03t0688300-01
Chr03	irgsp1_rep	CDS	27471058	27471470	.	+	2	Parent=Os03t0688300-01
Chr03	irgsp1_rep	CDS	27471558	27471725	.	+	0	Parent=Os03t0688300-01
Chr03	irgsp1_rep	CDS	27471795	27472025	.	+	0	Parent=Os03t0688300-01
Chr03	irgsp1_rep	CDS	27472302	27472448	.	+	0	Parent=Os03t0688300-01
Chr03	irgsp1_rep	three_prime_UTR	27472449	27472746	.	+	.	Parent=Os03t0688300-01
Chr03	irgsp1_rep	mRNA	27467660	27472444	.	-	.	ID=Os03t0688450-00;Name=Os03t0688450-00;Locus_id=Os03g0688450;Note=Hypothetical protein.;Transcript_evidence=tplb0027d15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0688450-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	27472320	27472444	.	-	.	Parent=Os03t0688450-00
Chr03	irgsp1_rep	five_prime_UTR	27471797	27472043	.	-	.	Parent=Os03t0688450-00
Chr03	irgsp1_rep	five_prime_UTR	27471719	27471727	.	-	.	Parent=Os03t0688450-00
Chr03	irgsp1_rep	CDS	27471573	27471718	.	-	0	Parent=Os03t0688450-00
Chr03	irgsp1_rep	CDS	27471164	27471488	.	-	1	Parent=Os03t0688450-00
Chr03	irgsp1_rep	three_prime_UTR	27471056	27471163	.	-	.	Parent=Os03t0688450-00
Chr03	irgsp1_rep	three_prime_UTR	27467660	27468313	.	-	.	Parent=Os03t0688450-00
Chr03	irgsp1_rep	mRNA	27473734	27474424	.	+	.	ID=Os03t0688600-00;Name=Os03t0688600-00;Locus_id=Os03g0688600;Note=Ribosome-inactivating protein domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10EZ4 (UniProt);GO=Biological Process: negative regulation of translation (GO:0017148),Molecular Function: rRNA N-glycosylase activity (GO:0030598);InterPro=Ribosome-inactivating protein (IPR001574);TENOR=Os03t0688600-00
Chr03	irgsp1_rep	CDS	27473734	27473945	.	+	0	Parent=Os03t0688600-00
Chr03	irgsp1_rep	CDS	27473977	27474424	.	+	1	Parent=Os03t0688600-00
Chr03	irgsp1_rep	mRNA	27487161	27503846	.	+	.	ID=Os03t0689100-01;Name=Os03t0689100-01;Locus_id=Os03g0689100;Note=Histidine acid phosphatase family protein.;Transcript_evidence=AK064988 (DDBJ%2C Best hit);ORF_evidence=A2Q2R2 (UniProt);GO=Molecular Function: acid phosphatase activity (GO:0003993);InterPro=Histidine phosphatase superfamily%2C clade-2 (IPR000560);NIAS_FLcDNA=J013001D07;Expression=AK064988;TENOR=Os03t0689100-01;KEGG=Os03t0689100-01
Chr03	irgsp1_rep	five_prime_UTR	27487161	27487450	.	+	.	Parent=Os03t0689100-01
Chr03	irgsp1_rep	CDS	27487451	27487516	.	+	0	Parent=Os03t0689100-01
Chr03	irgsp1_rep	CDS	27487924	27487983	.	+	0	Parent=Os03t0689100-01
Chr03	irgsp1_rep	CDS	27488986	27489032	.	+	0	Parent=Os03t0689100-01
Chr03	irgsp1_rep	CDS	27489195	27489278	.	+	1	Parent=Os03t0689100-01
Chr03	irgsp1_rep	CDS	27490152	27490215	.	+	1	Parent=Os03t0689100-01
Chr03	irgsp1_rep	CDS	27491218	27491371	.	+	0	Parent=Os03t0689100-01
Chr03	irgsp1_rep	CDS	27491642	27491712	.	+	2	Parent=Os03t0689100-01
Chr03	irgsp1_rep	CDS	27492175	27492279	.	+	0	Parent=Os03t0689100-01
Chr03	irgsp1_rep	CDS	27492771	27492863	.	+	0	Parent=Os03t0689100-01
Chr03	irgsp1_rep	CDS	27493709	27493783	.	+	0	Parent=Os03t0689100-01
Chr03	irgsp1_rep	CDS	27494151	27494236	.	+	0	Parent=Os03t0689100-01
Chr03	irgsp1_rep	CDS	27494330	27494536	.	+	1	Parent=Os03t0689100-01
Chr03	irgsp1_rep	CDS	27494622	27494721	.	+	1	Parent=Os03t0689100-01
Chr03	irgsp1_rep	CDS	27494802	27494872	.	+	0	Parent=Os03t0689100-01
Chr03	irgsp1_rep	CDS	27494997	27495078	.	+	1	Parent=Os03t0689100-01
Chr03	irgsp1_rep	CDS	27495957	27496115	.	+	0	Parent=Os03t0689100-01
Chr03	irgsp1_rep	CDS	27496812	27496854	.	+	0	Parent=Os03t0689100-01
Chr03	irgsp1_rep	CDS	27497667	27497749	.	+	2	Parent=Os03t0689100-01
Chr03	irgsp1_rep	CDS	27498606	27498668	.	+	0	Parent=Os03t0689100-01
Chr03	irgsp1_rep	CDS	27498757	27498831	.	+	0	Parent=Os03t0689100-01
Chr03	irgsp1_rep	CDS	27499657	27499782	.	+	0	Parent=Os03t0689100-01
Chr03	irgsp1_rep	CDS	27500304	27500536	.	+	0	Parent=Os03t0689100-01
Chr03	irgsp1_rep	CDS	27500648	27500692	.	+	1	Parent=Os03t0689100-01
Chr03	irgsp1_rep	CDS	27500990	27501056	.	+	1	Parent=Os03t0689100-01
Chr03	irgsp1_rep	CDS	27502132	27502203	.	+	0	Parent=Os03t0689100-01
Chr03	irgsp1_rep	CDS	27502313	27502557	.	+	0	Parent=Os03t0689100-01
Chr03	irgsp1_rep	CDS	27502635	27502692	.	+	1	Parent=Os03t0689100-01
Chr03	irgsp1_rep	CDS	27502780	27502947	.	+	0	Parent=Os03t0689100-01
Chr03	irgsp1_rep	CDS	27503261	27503335	.	+	0	Parent=Os03t0689100-01
Chr03	irgsp1_rep	CDS	27503449	27503706	.	+	0	Parent=Os03t0689100-01
Chr03	irgsp1_rep	three_prime_UTR	27503707	27503846	.	+	.	Parent=Os03t0689100-01
Chr03	irgsp1_rep	mRNA	27496059	27503855	.	+	.	ID=Os03t0689100-02;Name=Os03t0689100-02;Locus_id=Os03g0689100;Note=Similar to predicted protein.;Transcript_evidence=AK060749 (DDBJ%2C Best hit);ORF_evidence=A2Q2R2 (UniProt);GO=Molecular Function: acid phosphatase activity (GO:0003993);InterPro=Histidine phosphatase superfamily%2C clade-2 (IPR000560);NIAS_FLcDNA=001-032-F12;Expression=AK060749;TENOR=Os03t0689100-02;KEGG=Os03t0689100-02 (EC:2.7.4.21%2C EC:2.7.4.24)
Chr03	irgsp1_rep	CDS	27496059	27496115	.	+	0	Parent=Os03t0689100-02
Chr03	irgsp1_rep	CDS	27496812	27496854	.	+	0	Parent=Os03t0689100-02
Chr03	irgsp1_rep	CDS	27497667	27497749	.	+	2	Parent=Os03t0689100-02
Chr03	irgsp1_rep	CDS	27498606	27498668	.	+	0	Parent=Os03t0689100-02
Chr03	irgsp1_rep	CDS	27498757	27498831	.	+	0	Parent=Os03t0689100-02
Chr03	irgsp1_rep	CDS	27499657	27499782	.	+	0	Parent=Os03t0689100-02
Chr03	irgsp1_rep	CDS	27500304	27500536	.	+	0	Parent=Os03t0689100-02
Chr03	irgsp1_rep	CDS	27500648	27500692	.	+	1	Parent=Os03t0689100-02
Chr03	irgsp1_rep	CDS	27500990	27501056	.	+	1	Parent=Os03t0689100-02
Chr03	irgsp1_rep	CDS	27502132	27502203	.	+	0	Parent=Os03t0689100-02
Chr03	irgsp1_rep	CDS	27502313	27502557	.	+	0	Parent=Os03t0689100-02
Chr03	irgsp1_rep	CDS	27502635	27502692	.	+	1	Parent=Os03t0689100-02
Chr03	irgsp1_rep	CDS	27502780	27502947	.	+	0	Parent=Os03t0689100-02
Chr03	irgsp1_rep	CDS	27503261	27503335	.	+	0	Parent=Os03t0689100-02
Chr03	irgsp1_rep	CDS	27503449	27503706	.	+	0	Parent=Os03t0689100-02
Chr03	irgsp1_rep	three_prime_UTR	27503707	27503855	.	+	.	Parent=Os03t0689100-02
Chr03	irgsp1_rep	mRNA	27510164	27517299	.	+	.	ID=Os03t0689300-01;Name=Os03t0689300-01;Locus_id=Os03g0689300;CGSNL Gene Symbol=AHA1;CGSNL Gene Name=H+-ATPASE 1;Oryzabase Gene Symbol Synonym(s)=OSA1%2C OsA1%2C osAHA1%2C AHA1;Oryzabase Gene Name Synonym(s)=plasma membrane H+-ATPase 1%2C PM H+-ATPase 1%2C plasma membrane H+ P-Type ATPase 1;Note=Plasma membrane H+ ATPase (EC 3.6.3.6) (H-ATPase).;Transcript_evidence=AK068765 (DDBJ%2C Best hit);ORF_evidence=Q43001 (UniProt);GO=Biological Process: ATP catabolic process (GO:0006200),Biological Process: ATP biosynthetic process (GO:0006754),Biological Process: cation transport (GO:0006812),Biological Process: metabolic process (GO:0008152),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662),Molecular Function: ATPase activity (GO:0016887),Molecular Function: metal ion binding (GO:0046872);InterPro=ATPase%2C P-type%2C H+ transporting proton pump (IPR000695),ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),ATPase%2C P-type cation-transporter%2C N-terminal (IPR004014),Haloacid dehalogenase-like hydrolase (IPR005834),ATPase%2C P-type%2C plasma-membrane proton-efflux (IPR006534),ATPase%2C P-type%2C ATPase-associated domain (IPR008250),ATPase%2C P-type phosphorylation site (IPR018303),HAD-like domain (IPR023214),ATPase%2C P-type%2C  transmembrane domain (IPR023298),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C  P-type%2C cytoplasmic transduction domain A (IPR023300);NIAS_FLcDNA=J013162E15;Oryzabase=11186;Expression=AK068765;TENOR=Os03t0689300-01;KEGG=Os03t0689300-01 (EC:3.6.3.6)
Chr03	irgsp1_rep	five_prime_UTR	27510164	27510440	.	+	.	Parent=Os03t0689300-01
Chr03	irgsp1_rep	CDS	27510441	27510494	.	+	0	Parent=Os03t0689300-01
Chr03	irgsp1_rep	CDS	27511387	27511506	.	+	0	Parent=Os03t0689300-01
Chr03	irgsp1_rep	CDS	27511634	27511732	.	+	0	Parent=Os03t0689300-01
Chr03	irgsp1_rep	CDS	27511880	27512017	.	+	0	Parent=Os03t0689300-01
Chr03	irgsp1_rep	CDS	27512121	27512255	.	+	0	Parent=Os03t0689300-01
Chr03	irgsp1_rep	CDS	27512345	27512522	.	+	0	Parent=Os03t0689300-01
Chr03	irgsp1_rep	CDS	27512627	27512835	.	+	2	Parent=Os03t0689300-01
Chr03	irgsp1_rep	CDS	27512928	27513047	.	+	0	Parent=Os03t0689300-01
Chr03	irgsp1_rep	CDS	27513116	27513235	.	+	0	Parent=Os03t0689300-01
Chr03	irgsp1_rep	CDS	27513316	27513438	.	+	0	Parent=Os03t0689300-01
Chr03	irgsp1_rep	CDS	27513538	27513642	.	+	0	Parent=Os03t0689300-01
Chr03	irgsp1_rep	CDS	27513801	27513945	.	+	0	Parent=Os03t0689300-01
Chr03	irgsp1_rep	CDS	27514695	27514859	.	+	2	Parent=Os03t0689300-01
Chr03	irgsp1_rep	CDS	27514947	27515185	.	+	2	Parent=Os03t0689300-01
Chr03	irgsp1_rep	CDS	27515273	27515305	.	+	0	Parent=Os03t0689300-01
Chr03	irgsp1_rep	CDS	27515593	27515674	.	+	0	Parent=Os03t0689300-01
Chr03	irgsp1_rep	CDS	27515784	27515944	.	+	2	Parent=Os03t0689300-01
Chr03	irgsp1_rep	CDS	27516058	27516243	.	+	0	Parent=Os03t0689300-01
Chr03	irgsp1_rep	CDS	27516331	27516513	.	+	0	Parent=Os03t0689300-01
Chr03	irgsp1_rep	CDS	27516610	27516788	.	+	0	Parent=Os03t0689300-01
Chr03	irgsp1_rep	CDS	27517046	27517142	.	+	1	Parent=Os03t0689300-01
Chr03	irgsp1_rep	three_prime_UTR	27517143	27517299	.	+	.	Parent=Os03t0689300-01
Chr03	irgsp1_rep	mRNA	27510346	27515009	.	+	.	ID=Os03t0689300-02;Name=Os03t0689300-02;Locus_id=Os03g0689300;CGSNL Gene Symbol=AHA1;CGSNL Gene Name=H+-ATPASE 1;Oryzabase Gene Symbol Synonym(s)=OSA1%2C OsA1%2C osAHA1%2C AHA1;Oryzabase Gene Name Synonym(s)=plasma membrane H+-ATPase 1%2C PM H+-ATPase 1%2C plasma membrane H+ P-Type ATPase 1;Note=Similar to H-ATPase.;Transcript_evidence=AK100996 (DDBJ%2C Best hit);ORF_evidence=Q43001 (UniProt);GO=Biological Process: ATP catabolic process (GO:0006200),Biological Process: ATP biosynthetic process (GO:0006754),Biological Process: cation transport (GO:0006812),Biological Process: metabolic process (GO:0008152),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C catalyzing transmembrane movement of substances (GO:0016820),Molecular Function: ATPase activity (GO:0016887),Molecular Function: metal ion binding (GO:0046872);InterPro=ATPase%2C P-type%2C H+ transporting proton pump (IPR000695),ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),ATPase%2C P-type cation-transporter%2C N-terminal (IPR004014),Haloacid dehalogenase-like hydrolase (IPR005834),ATPase%2C P-type%2C plasma-membrane proton-efflux (IPR006534),ATPase%2C P-type%2C ATPase-associated domain (IPR008250),ATPase%2C P-type phosphorylation site (IPR018303),HAD-like domain (IPR023214),ATPase%2C P-type%2C  transmembrane domain (IPR023298),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C  P-type%2C cytoplasmic transduction domain A (IPR023300),ATPase%2C cation-transporting%2C domain N (IPR023306);NIAS_FLcDNA=J023146K22;Oryzabase=11186;TENOR=Os03t0689300-02
Chr03	irgsp1_rep	five_prime_UTR	27510346	27510440	.	+	.	Parent=Os03t0689300-02
Chr03	irgsp1_rep	CDS	27510441	27510494	.	+	0	Parent=Os03t0689300-02
Chr03	irgsp1_rep	CDS	27511387	27511506	.	+	0	Parent=Os03t0689300-02
Chr03	irgsp1_rep	CDS	27511634	27511732	.	+	0	Parent=Os03t0689300-02
Chr03	irgsp1_rep	CDS	27511880	27512017	.	+	0	Parent=Os03t0689300-02
Chr03	irgsp1_rep	CDS	27512121	27512255	.	+	0	Parent=Os03t0689300-02
Chr03	irgsp1_rep	CDS	27512345	27512522	.	+	0	Parent=Os03t0689300-02
Chr03	irgsp1_rep	CDS	27512627	27512835	.	+	2	Parent=Os03t0689300-02
Chr03	irgsp1_rep	CDS	27512928	27513047	.	+	0	Parent=Os03t0689300-02
Chr03	irgsp1_rep	CDS	27513116	27513235	.	+	0	Parent=Os03t0689300-02
Chr03	irgsp1_rep	CDS	27513316	27513438	.	+	0	Parent=Os03t0689300-02
Chr03	irgsp1_rep	CDS	27513538	27513642	.	+	0	Parent=Os03t0689300-02
Chr03	irgsp1_rep	CDS	27513801	27513945	.	+	0	Parent=Os03t0689300-02
Chr03	irgsp1_rep	CDS	27514695	27514859	.	+	2	Parent=Os03t0689300-02
Chr03	irgsp1_rep	CDS	27514947	27515009	.	+	2	Parent=Os03t0689300-02
Chr03	irgsp1_rep	mRNA	27510439	27517145	.	-	.	ID=Os03t0689350-00;Name=Os03t0689350-00;Locus_id=Os03g0689350;Note=Hypothetical protein.;Transcript_evidence=tplb0039e05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0689350-00
Chr03	irgsp1_rep	five_prime_UTR	27517064	27517145	.	-	.	Parent=Os03t0689350-00
Chr03	irgsp1_rep	five_prime_UTR	27516610	27516801	.	-	.	Parent=Os03t0689350-00
Chr03	irgsp1_rep	five_prime_UTR	27516339	27516513	.	-	.	Parent=Os03t0689350-00
Chr03	irgsp1_rep	five_prime_UTR	27516058	27516250	.	-	.	Parent=Os03t0689350-00
Chr03	irgsp1_rep	five_prime_UTR	27515778	27515944	.	-	.	Parent=Os03t0689350-00
Chr03	irgsp1_rep	five_prime_UTR	27515591	27515664	.	-	.	Parent=Os03t0689350-00
Chr03	irgsp1_rep	five_prime_UTR	27514944	27515213	.	-	.	Parent=Os03t0689350-00
Chr03	irgsp1_rep	five_prime_UTR	27514700	27514856	.	-	.	Parent=Os03t0689350-00
Chr03	irgsp1_rep	five_prime_UTR	27513799	27513950	.	-	.	Parent=Os03t0689350-00
Chr03	irgsp1_rep	five_prime_UTR	27513556	27513640	.	-	.	Parent=Os03t0689350-00
Chr03	irgsp1_rep	five_prime_UTR	27513314	27513454	.	-	.	Parent=Os03t0689350-00
Chr03	irgsp1_rep	five_prime_UTR	27513102	27513233	.	-	.	Parent=Os03t0689350-00
Chr03	irgsp1_rep	five_prime_UTR	27512939	27513038	.	-	.	Parent=Os03t0689350-00
Chr03	irgsp1_rep	five_prime_UTR	27512637	27512843	.	-	.	Parent=Os03t0689350-00
Chr03	irgsp1_rep	five_prime_UTR	27512356	27512539	.	-	.	Parent=Os03t0689350-00
Chr03	irgsp1_rep	five_prime_UTR	27512207	27512262	.	-	.	Parent=Os03t0689350-00
Chr03	irgsp1_rep	CDS	27512124	27512206	.	-	0	Parent=Os03t0689350-00
Chr03	irgsp1_rep	CDS	27511890	27512020	.	-	1	Parent=Os03t0689350-00
Chr03	irgsp1_rep	CDS	27511632	27511739	.	-	2	Parent=Os03t0689350-00
Chr03	irgsp1_rep	CDS	27511385	27511504	.	-	2	Parent=Os03t0689350-00
Chr03	irgsp1_rep	CDS	27510439	27510490	.	-	2	Parent=Os03t0689350-00
Chr03	irgsp1_rep	mRNA	27517768	27521337	.	-	.	ID=Os03t0689400-01;Name=Os03t0689400-01;Locus_id=Os03g0689400;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=AK101113 (DDBJ%2C Best hit);ORF_evidence=Q10EZ0 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J033025F14;TENOR=Os03t0689400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	27521260	27521337	.	-	.	Parent=Os03t0689400-01
Chr03	irgsp1_rep	CDS	27520372	27521259	.	-	0	Parent=Os03t0689400-01
Chr03	irgsp1_rep	CDS	27517860	27520034	.	-	0	Parent=Os03t0689400-01
Chr03	irgsp1_rep	three_prime_UTR	27517768	27517859	.	-	.	Parent=Os03t0689400-01
Chr03	irgsp1_rep	mRNA	27520367	27521474	.	+	.	ID=Os03t0689544-00;Name=Os03t0689544-00;Locus_id=Os03g0689544;Note=Hypothetical protein.;Transcript_evidence=EU946478 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0689544-00
Chr03	irgsp1_rep	five_prime_UTR	27520367	27520672	.	+	.	Parent=Os03t0689544-00
Chr03	irgsp1_rep	CDS	27520673	27521474	.	+	0	Parent=Os03t0689544-00
Chr03	irgsp1_rep	mRNA	27536731	27537829	.	-	.	ID=Os03t0689688-00;Name=Os03t0689688-00;Locus_id=Os03g0689688;Note=Hypothetical protein.;Transcript_evidence=EU946478 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0689688-00
Chr03	irgsp1_rep	five_prime_UTR	27537260	27537829	.	-	.	Parent=Os03t0689688-00
Chr03	irgsp1_rep	CDS	27537252	27537259	.	-	0	Parent=Os03t0689688-00
Chr03	irgsp1_rep	CDS	27536731	27537189	.	-	1	Parent=Os03t0689688-00
Chr03	irgsp1_rep	mRNA	27541735	27542526	.	+	.	ID=Os03t0689833-00;Name=Os03t0689833-00;Locus_id=Os03g0689833;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10EZ0 (UniProt);TENOR=Os03t0689833-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	27541735	27542526	.	+	0	Parent=Os03t0689833-00
Chr03	irgsp1_rep	mRNA	27542551	27543081	.	+	.	ID=Os03t0689866-00;Name=Os03t0689866-00;Locus_id=Os03g0689866;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001173594.1 (RefSeq);TENOR=Os03t0689866-00
Chr03	irgsp1_rep	CDS	27542551	27543081	.	+	0	Parent=Os03t0689866-00
Chr03	irgsp1_rep	mRNA	27546294	27550181	.	-	.	ID=Os03t0689900-00;Name=Os03t0689900-00;Locus_id=Os03g0689900;Note=Similar to predicted protein.;Transcript_evidence=tplb0003j15 (Wheat FLcDNA);ORF_evidence=NP_564271.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026);TENOR=Os03t0689900-00;KEGG=Os03t0689900-00
Chr03	irgsp1_rep	five_prime_UTR	27550078	27550181	.	-	.	Parent=Os03t0689900-00
Chr03	irgsp1_rep	CDS	27549808	27550077	.	-	0	Parent=Os03t0689900-00
Chr03	irgsp1_rep	CDS	27549594	27549692	.	-	0	Parent=Os03t0689900-00
Chr03	irgsp1_rep	CDS	27549385	27549486	.	-	0	Parent=Os03t0689900-00
Chr03	irgsp1_rep	CDS	27548885	27549028	.	-	0	Parent=Os03t0689900-00
Chr03	irgsp1_rep	CDS	27548647	27548741	.	-	0	Parent=Os03t0689900-00
Chr03	irgsp1_rep	CDS	27548420	27548549	.	-	1	Parent=Os03t0689900-00
Chr03	irgsp1_rep	CDS	27548246	27548350	.	-	0	Parent=Os03t0689900-00
Chr03	irgsp1_rep	CDS	27547931	27548037	.	-	0	Parent=Os03t0689900-00
Chr03	irgsp1_rep	CDS	27547790	27547841	.	-	1	Parent=Os03t0689900-00
Chr03	irgsp1_rep	CDS	27547352	27547441	.	-	0	Parent=Os03t0689900-00
Chr03	irgsp1_rep	CDS	27547181	27547265	.	-	0	Parent=Os03t0689900-00
Chr03	irgsp1_rep	CDS	27547027	27547091	.	-	2	Parent=Os03t0689900-00
Chr03	irgsp1_rep	CDS	27546303	27546392	.	-	0	Parent=Os03t0689900-00
Chr03	irgsp1_rep	three_prime_UTR	27546294	27546302	.	-	.	Parent=Os03t0689900-00
Chr03	irgsp1_rep	mRNA	27552077	27554435	.	+	.	ID=Os03t0690000-01;Name=Os03t0690000-01;Locus_id=Os03g0690000;Note=Similar to Costars family protein.;Transcript_evidence=AK062756 (DDBJ%2C Best hit);ORF_evidence=A2XKU9 (UniProt);NIAS_FLcDNA=001-106-G08;Expression=AK062756;TENOR=Os03t0690000-01;KEGG=Os03t0690000-01
Chr03	irgsp1_rep	five_prime_UTR	27552077	27552156	.	+	.	Parent=Os03t0690000-01
Chr03	irgsp1_rep	CDS	27552157	27552237	.	+	0	Parent=Os03t0690000-01
Chr03	irgsp1_rep	CDS	27554054	27554236	.	+	0	Parent=Os03t0690000-01
Chr03	irgsp1_rep	three_prime_UTR	27554237	27554435	.	+	.	Parent=Os03t0690000-01
Chr03	irgsp1_rep	mRNA	27580909	27582211	.	-	.	ID=Os03t0690500-00;Name=Os03t0690500-00;Locus_id=Os03g0690500;Note=Similar to Oxidoreductase%2C 2OG-Fe oxygenase family protein%2C expressed.;Transcript_evidence=CT835187 (DDBJ%2C Best hit);ORF_evidence=Q10A95 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);TENOR=Os03t0690500-00;KEGG=Os03t0690500-00
Chr03	irgsp1_rep	five_prime_UTR	27582210	27582211	.	-	.	Parent=Os03t0690500-00
Chr03	irgsp1_rep	CDS	27581016	27582209	.	-	0	Parent=Os03t0690500-00
Chr03	irgsp1_rep	three_prime_UTR	27580909	27581015	.	-	.	Parent=Os03t0690500-00
Chr03	irgsp1_rep	mRNA	27587894	27592754	.	-	.	ID=Os03t0690600-01;Name=Os03t0690600-01;Locus_id=Os03g0690600;CGSNL Gene Symbol=GRAS17;CGSNL Gene Name=GRAS PROTEIN 17;Oryzabase Gene Symbol Synonym(s)=OsSCL14%2C SCL14%2C OsGRAS-17%2C OsGRAS17%2C GRAS-17%2C DLN96%2C OsDLN96;Oryzabase Gene Name Synonym(s)=GRAS protein 17%2C DLN repressor 96%2C DLN motif protein 96;Note=Similar to SCARECROW-like protein.;Transcript_evidence=AK101451 (DDBJ%2C Best hit);ORF_evidence=Q7X9T5 (UniProt);InterPro=Transcription factor GRAS (IPR005202);NIAS_FLcDNA=J033039N10;Oryzabase=19060;Expression=AK101451;TENOR=Os03t0690600-01;KEGG=Os03t0690600-01
Chr03	irgsp1_rep	five_prime_UTR	27592496	27592754	.	-	.	Parent=Os03t0690600-01
Chr03	irgsp1_rep	five_prime_UTR	27592143	27592166	.	-	.	Parent=Os03t0690600-01
Chr03	irgsp1_rep	CDS	27589947	27592142	.	-	0	Parent=Os03t0690600-01
Chr03	irgsp1_rep	three_prime_UTR	27589856	27589946	.	-	.	Parent=Os03t0690600-01
Chr03	irgsp1_rep	three_prime_UTR	27589130	27589375	.	-	.	Parent=Os03t0690600-01
Chr03	irgsp1_rep	three_prime_UTR	27588871	27589039	.	-	.	Parent=Os03t0690600-01
Chr03	irgsp1_rep	three_prime_UTR	27588602	27588715	.	-	.	Parent=Os03t0690600-01
Chr03	irgsp1_rep	three_prime_UTR	27587894	27588213	.	-	.	Parent=Os03t0690600-01
Chr03	irgsp1_rep	mRNA	27589522	27592751	.	-	.	ID=Os03t0690600-02;Name=Os03t0690600-02;Locus_id=Os03g0690600;CGSNL Gene Symbol=GRAS17;CGSNL Gene Name=GRAS PROTEIN 17;Oryzabase Gene Symbol Synonym(s)=OsSCL14%2C SCL14%2C OsGRAS-17%2C OsGRAS17%2C GRAS-17%2C DLN96%2C OsDLN96;Oryzabase Gene Name Synonym(s)=GRAS protein 17%2C DLN repressor 96%2C DLN motif protein 96;Note=Similar to SCARECROW-like protein.;Transcript_evidence=AK101402 (DDBJ%2C Best hit);ORF_evidence=Q7X9T5 (UniProt);InterPro=Transcription factor GRAS (IPR005202);NIAS_FLcDNA=J033037F15;Oryzabase=19060;Expression=AK101402;TENOR=Os03t0690600-02;KEGG=Os03t0690600-02
Chr03	irgsp1_rep	five_prime_UTR	27592496	27592751	.	-	.	Parent=Os03t0690600-02
Chr03	irgsp1_rep	five_prime_UTR	27592143	27592166	.	-	.	Parent=Os03t0690600-02
Chr03	irgsp1_rep	CDS	27589947	27592142	.	-	0	Parent=Os03t0690600-02
Chr03	irgsp1_rep	three_prime_UTR	27589522	27589946	.	-	.	Parent=Os03t0690600-02
Chr03	irgsp1_rep	mRNA	27588808	27592738	.	-	.	ID=Os03t0690600-03;Name=Os03t0690600-03;Locus_id=Os03g0690600;CGSNL Gene Symbol=GRAS17;CGSNL Gene Name=GRAS PROTEIN 17;Oryzabase Gene Symbol Synonym(s)=OsSCL14%2C SCL14%2C OsGRAS-17%2C OsGRAS17%2C GRAS-17%2C DLN96%2C OsDLN96;Oryzabase Gene Name Synonym(s)=GRAS protein 17%2C DLN repressor 96%2C DLN motif protein 96;Note=Similar to SCARECROW-like protein.;Transcript_evidence=AK101848 (DDBJ%2C Best hit);ORF_evidence=A2XKV4 (UniProt);InterPro=Transcription factor GRAS (IPR005202);NIAS_FLcDNA=J033069K04;Oryzabase=19060;Expression=AK101848;TENOR=Os03t0690600-03;KEGG=Os03t0690600-03
Chr03	irgsp1_rep	five_prime_UTR	27592496	27592738	.	-	.	Parent=Os03t0690600-03
Chr03	irgsp1_rep	five_prime_UTR	27592143	27592166	.	-	.	Parent=Os03t0690600-03
Chr03	irgsp1_rep	CDS	27589947	27592142	.	-	0	Parent=Os03t0690600-03
Chr03	irgsp1_rep	three_prime_UTR	27589130	27589946	.	-	.	Parent=Os03t0690600-03
Chr03	irgsp1_rep	three_prime_UTR	27588808	27589039	.	-	.	Parent=Os03t0690600-03
Chr03	irgsp1_rep	mRNA	27608671	27613959	.	+	.	ID=Os03t0690700-00;Name=Os03t0690700-00;Locus_id=Os03g0690700;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10EX4 (UniProt);TENOR=Os03t0690700-00
Chr03	irgsp1_rep	CDS	27608671	27608859	.	+	0	Parent=Os03t0690700-00
Chr03	irgsp1_rep	CDS	27613525	27613617	.	+	0	Parent=Os03t0690700-00
Chr03	irgsp1_rep	CDS	27613900	27613959	.	+	0	Parent=Os03t0690700-00
Chr03	irgsp1_rep	mRNA	27641720	27644999	.	+	.	ID=Os03t0691050-01;Name=Os03t0691050-01;Locus_id=Os03g0691050;Note=Hypothetical gene.;Transcript_evidence=AK288855 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090076C08;TENOR=Os03t0691050-01;KEGG=Os03t0691050-01
Chr03	irgsp1_rep	five_prime_UTR	27641720	27643688	.	+	.	Parent=Os03t0691050-01
Chr03	irgsp1_rep	CDS	27643689	27643919	.	+	0	Parent=Os03t0691050-01
Chr03	irgsp1_rep	three_prime_UTR	27643920	27644999	.	+	.	Parent=Os03t0691050-01
Chr03	irgsp1_rep	mRNA	27644644	27647511	.	-	.	ID=Os03t0691400-01;Name=Os03t0691400-01;Locus_id=Os03g0691400;Note=Thioesterase superfamily domain containing protein.;Transcript_evidence=AK071319 (DDBJ%2C Best hit);ORF_evidence=NP_001150131.1 (RefSeq);InterPro=Phenylacetic acid degradation-related protein (IPR003736),Thioesterase superfamily (IPR006683);NIAS_FLcDNA=J023084L19;Expression=AK071319;TENOR=Os03t0691400-01;KEGG=Os03t0691400-01
Chr03	irgsp1_rep	five_prime_UTR	27647286	27647511	.	-	.	Parent=Os03t0691400-01
Chr03	irgsp1_rep	CDS	27647136	27647285	.	-	0	Parent=Os03t0691400-01
Chr03	irgsp1_rep	CDS	27646851	27647042	.	-	0	Parent=Os03t0691400-01
Chr03	irgsp1_rep	CDS	27644880	27645032	.	-	0	Parent=Os03t0691400-01
Chr03	irgsp1_rep	three_prime_UTR	27644644	27644879	.	-	.	Parent=Os03t0691400-01
Chr03	irgsp1_rep	mRNA	27652240	27655767	.	+	.	ID=Os03t0691500-00;Name=Os03t0691500-00;Locus_id=Os03g0691500;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FAP8 (UniProt);TENOR=Os03t0691500-00;KEGG=Os03t0691500-00
Chr03	irgsp1_rep	CDS	27652240	27652279	.	+	0	Parent=Os03t0691500-00
Chr03	irgsp1_rep	CDS	27652397	27655767	.	+	2	Parent=Os03t0691500-00
Chr03	irgsp1_rep	mRNA	27669017	27674441	.	+	.	ID=Os03t0691800-01;Name=Os03t0691800-01;Locus_id=Os03g0691800;Note=Similar to HIPL1 protein precursor.;Transcript_evidence=AK073577 (DDBJ%2C Best hit);ORF_evidence=C3TX91 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C quinone or similar compound as acceptor (GO:0016901),Molecular Function: quinone binding (GO:0048038);InterPro=Soluble quinoprotein glucose/sorbosone dehydrogenase (IPR011041),Six-bladed beta-propeller%2C TolB-like (IPR011042),Glucose/Sorbosone dehydrogenase (IPR012938);NIAS_FLcDNA=J033047C15;Expression=AK073577;TENOR=Os03t0691800-01;KEGG=Os03t0691800-01
Chr03	irgsp1_rep	five_prime_UTR	27669017	27669038	.	+	.	Parent=Os03t0691800-01
Chr03	irgsp1_rep	CDS	27669039	27669144	.	+	0	Parent=Os03t0691800-01
Chr03	irgsp1_rep	CDS	27669237	27669406	.	+	2	Parent=Os03t0691800-01
Chr03	irgsp1_rep	CDS	27670247	27671038	.	+	0	Parent=Os03t0691800-01
Chr03	irgsp1_rep	CDS	27671219	27671435	.	+	0	Parent=Os03t0691800-01
Chr03	irgsp1_rep	CDS	27672009	27672187	.	+	2	Parent=Os03t0691800-01
Chr03	irgsp1_rep	CDS	27672629	27672870	.	+	0	Parent=Os03t0691800-01
Chr03	irgsp1_rep	CDS	27673699	27674089	.	+	1	Parent=Os03t0691800-01
Chr03	irgsp1_rep	three_prime_UTR	27674090	27674441	.	+	.	Parent=Os03t0691800-01
Chr03	irgsp1_rep	mRNA	27672581	27673987	.	-	.	ID=Os03t0691900-00;Name=Os03t0691900-00;Locus_id=Os03g0691900;Note=Non-protein coding transcript.;Transcript_evidence=EU949559 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0691900-00
Chr03	irgsp1_rep	exon	27673721	27673987	.	-	.	Parent=Os03t0691900-00
Chr03	irgsp1_rep	exon	27672581	27672788	.	-	.	Parent=Os03t0691900-00
Chr03	irgsp1_rep	mRNA	27678315	27681645	.	+	.	ID=Os03t0692000-00;Name=Os03t0692000-00;Locus_id=Os03g0692000;Note=Glycosyl transferase%2C family 14 protein.;Transcript_evidence=AK375086 (DDBJ);ORF_evidence=NP_001147735.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020),Molecular Function: acetylglucosaminyltransferase activity (GO:0008375);InterPro=Glycosyl transferase%2C family 14 (IPR003406);TENOR=Os03t0692000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	27678315	27678461	.	+	.	Parent=Os03t0692000-00
Chr03	irgsp1_rep	CDS	27678462	27679053	.	+	0	Parent=Os03t0692000-00
Chr03	irgsp1_rep	CDS	27679239	27679314	.	+	2	Parent=Os03t0692000-00
Chr03	irgsp1_rep	CDS	27679403	27679518	.	+	1	Parent=Os03t0692000-00
Chr03	irgsp1_rep	CDS	27681080	27681645	.	+	2	Parent=Os03t0692000-00
Chr03	irgsp1_rep	mRNA	27691815	27693150	.	+	.	ID=Os03t0692100-00;Name=Os03t0692100-00;Locus_id=Os03g0692100;Oryzabase Gene Symbol Synonym(s)=OsCLE305%2C CLE305;Oryzabase Gene Name Synonym(s)=CLV3/ESR-related 305%2C CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 305;Note=Hypothetical conserved gene.;Transcript_evidence=AB332062 (DDBJ%2C Best hit);ORF_evidence=A8R3N5 (UniProt);Oryzabase=14232;TENOR=Os03t0692100-00;KEGG=Os03t0692100-00
Chr03	irgsp1_rep	CDS	27691815	27692125	.	+	0	Parent=Os03t0692100-00
Chr03	irgsp1_rep	CDS	27693033	27693150	.	+	1	Parent=Os03t0692100-00
Chr03	irgsp1_rep	mRNA	27703058	27705007	.	-	.	ID=Os03t0692300-00;Name=Os03t0692300-00;Locus_id=Os03g0692300;Note=Similar to Sec61 alpha subunit.;Transcript_evidence=AY044237 (DDBJ);ORF_evidence=Q94B06 (UniProt);GO=Biological Process: protein transport (GO:0015031),Cellular Component: membrane (GO:0016020),Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450);InterPro=SecY protein (IPR002208),Translocon Sec61/SecY%2C plug domain (IPR019561),SecY subunit domain (IPR023201);TENOR=Os03t0692300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	27704265	27705007	.	-	0	Parent=Os03t0692300-00
Chr03	irgsp1_rep	CDS	27703123	27704191	.	-	1	Parent=Os03t0692300-00
Chr03	irgsp1_rep	three_prime_UTR	27703058	27703122	.	-	.	Parent=Os03t0692300-00
Chr03	irgsp1_rep	mRNA	27703093	27704604	.	+	.	ID=Os03t0692350-00;Name=Os03t0692350-00;Locus_id=Os03g0692350;Note=Hypothetical protein.;Transcript_evidence=tplb0043d18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0692350-00
Chr03	irgsp1_rep	CDS	27703093	27704239	.	+	0	Parent=Os03t0692350-00
Chr03	irgsp1_rep	CDS	27704310	27704604	.	+	2	Parent=Os03t0692350-00
Chr03	irgsp1_rep	mRNA	27705349	27711024	.	-	.	ID=Os03t0692400-01;Name=Os03t0692400-01;Locus_id=Os03g0692400;Oryzabase Gene Symbol Synonym(s)=OsDSR5;Oryzabase Gene Name Synonym(s)=DUF966-stress repressive gene 5;Note=Protein of unknown function DUF966 family protein.;Transcript_evidence=AK101780 (DDBJ%2C Best hit);ORF_evidence=Q10EW2 (UniProt);InterPro=Protein of unknown function DUF966 (IPR010369),Uncharacterised conserved protein UCP031043 (IPR021182);NIAS_FLcDNA=J033064P17;Oryzabase=15442;Expression=AK101780;TENOR=Os03t0692400-01;KEGG=Os03t0692400-01
Chr03	irgsp1_rep	five_prime_UTR	27710656	27711024	.	-	.	Parent=Os03t0692400-01
Chr03	irgsp1_rep	five_prime_UTR	27710285	27710515	.	-	.	Parent=Os03t0692400-01
Chr03	irgsp1_rep	five_prime_UTR	27709482	27709549	.	-	.	Parent=Os03t0692400-01
Chr03	irgsp1_rep	five_prime_UTR	27709221	27709360	.	-	.	Parent=Os03t0692400-01
Chr03	irgsp1_rep	CDS	27709064	27709220	.	-	0	Parent=Os03t0692400-01
Chr03	irgsp1_rep	CDS	27708913	27708982	.	-	2	Parent=Os03t0692400-01
Chr03	irgsp1_rep	CDS	27708714	27708829	.	-	1	Parent=Os03t0692400-01
Chr03	irgsp1_rep	CDS	27707684	27708617	.	-	2	Parent=Os03t0692400-01
Chr03	irgsp1_rep	CDS	27705897	27706185	.	-	1	Parent=Os03t0692400-01
Chr03	irgsp1_rep	three_prime_UTR	27705850	27705896	.	-	.	Parent=Os03t0692400-01
Chr03	irgsp1_rep	three_prime_UTR	27705349	27705724	.	-	.	Parent=Os03t0692400-01
Chr03	irgsp1_rep	mRNA	27705348	27710216	.	-	.	ID=Os03t0692400-02;Name=Os03t0692400-02;Locus_id=Os03g0692400;Oryzabase Gene Symbol Synonym(s)=OsDSR5;Oryzabase Gene Name Synonym(s)=DUF966-stress repressive gene 5;Note=Protein of unknown function DUF966 family protein.;Transcript_evidence=AK070368 (DDBJ%2C Best hit);ORF_evidence=Q10EW2 (UniProt);InterPro=Protein of unknown function DUF966 (IPR010369),Uncharacterised conserved protein UCP031043 (IPR021182);NIAS_FLcDNA=J023049D14;Oryzabase=15442;Expression=AK070368;TENOR=Os03t0692400-02;KEGG=Os03t0692400-02
Chr03	irgsp1_rep	five_prime_UTR	27710030	27710216	.	-	.	Parent=Os03t0692400-02
Chr03	irgsp1_rep	five_prime_UTR	27709811	27709934	.	-	.	Parent=Os03t0692400-02
Chr03	irgsp1_rep	five_prime_UTR	27709482	27709549	.	-	.	Parent=Os03t0692400-02
Chr03	irgsp1_rep	five_prime_UTR	27709221	27709360	.	-	.	Parent=Os03t0692400-02
Chr03	irgsp1_rep	CDS	27709064	27709220	.	-	0	Parent=Os03t0692400-02
Chr03	irgsp1_rep	CDS	27708913	27708982	.	-	2	Parent=Os03t0692400-02
Chr03	irgsp1_rep	CDS	27708714	27708829	.	-	1	Parent=Os03t0692400-02
Chr03	irgsp1_rep	CDS	27707684	27708617	.	-	2	Parent=Os03t0692400-02
Chr03	irgsp1_rep	CDS	27705897	27706185	.	-	1	Parent=Os03t0692400-02
Chr03	irgsp1_rep	three_prime_UTR	27705850	27705896	.	-	.	Parent=Os03t0692400-02
Chr03	irgsp1_rep	three_prime_UTR	27705348	27705724	.	-	.	Parent=Os03t0692400-02
Chr03	irgsp1_rep	mRNA	27723754	27729054	.	-	.	ID=Os03t0692700-01;Name=Os03t0692700-01;Locus_id=Os03g0692700;Note=Similar to Pherophorin-S precursor.;Transcript_evidence=AK060462 (DDBJ%2C Best hit);ORF_evidence=Q851I6 (UniProt);InterPro=Protein of unknown function DUF538 (IPR007493);NIAS_FLcDNA=001-012-C05;Expression=AK060462;TENOR=Os03t0692700-01;KEGG=Os03t0692700-01
Chr03	irgsp1_rep	five_prime_UTR	27728987	27729054	.	-	.	Parent=Os03t0692700-01
Chr03	irgsp1_rep	CDS	27728468	27728986	.	-	0	Parent=Os03t0692700-01
Chr03	irgsp1_rep	CDS	27724365	27724370	.	-	0	Parent=Os03t0692700-01
Chr03	irgsp1_rep	three_prime_UTR	27723754	27724364	.	-	.	Parent=Os03t0692700-01
Chr03	irgsp1_rep	mRNA	27728304	27729046	.	-	.	ID=Os03t0692700-03;Name=Os03t0692700-03;Locus_id=Os03g0692700;Note=Hypothetical conserved gene.;Transcript_evidence=AK058266 (DDBJ%2C Best hit);ORF_evidence=Q851I6 (UniProt);InterPro=Protein of unknown function DUF538 (IPR007493);NIAS_FLcDNA=001-013-A07;Expression=AK058266;TENOR=Os03t0692700-03;KEGG=Os03t0692700-03
Chr03	irgsp1_rep	five_prime_UTR	27728987	27729046	.	-	.	Parent=Os03t0692700-03
Chr03	irgsp1_rep	CDS	27728462	27728986	.	-	0	Parent=Os03t0692700-03
Chr03	irgsp1_rep	three_prime_UTR	27728304	27728461	.	-	.	Parent=Os03t0692700-03
Chr03	irgsp1_rep	mRNA	27723976	27726323	.	-	.	ID=Os03t0692700-04;Name=Os03t0692700-04;Locus_id=Os03g0692700;Note=Similar to predicted protein.;Transcript_evidence=AK059787 (DDBJ%2C Best hit);ORF_evidence=Q851I5 (UniProt);InterPro=Protein of unknown function DUF538 (IPR007493);NIAS_FLcDNA=006-204-D10;Expression=AK059787;TENOR=Os03t0692700-04;KEGG=Os03t0692700-04
Chr03	irgsp1_rep	five_prime_UTR	27726268	27726323	.	-	.	Parent=Os03t0692700-04
Chr03	irgsp1_rep	CDS	27725758	27726267	.	-	0	Parent=Os03t0692700-04
Chr03	irgsp1_rep	CDS	27724365	27724370	.	-	0	Parent=Os03t0692700-04
Chr03	irgsp1_rep	three_prime_UTR	27723976	27724364	.	-	.	Parent=Os03t0692700-04
Chr03	irgsp1_rep	mRNA	27725306	27726321	.	-	.	ID=Os03t0692700-05;Name=Os03t0692700-05;Locus_id=Os03g0692700;Note=Similar to predicted protein.;Transcript_evidence=AK111313 (DDBJ%2C Best hit);ORF_evidence=Q6AV43 (UniProt);InterPro=Protein of unknown function DUF538 (IPR007493);NIAS_FLcDNA=002-181-C05;Expression=AK111313;TENOR=Os03t0692700-05;KEGG=Os03t0692700-05
Chr03	irgsp1_rep	five_prime_UTR	27726268	27726321	.	-	.	Parent=Os03t0692700-05
Chr03	irgsp1_rep	CDS	27725752	27726267	.	-	0	Parent=Os03t0692700-05
Chr03	irgsp1_rep	three_prime_UTR	27725306	27725751	.	-	.	Parent=Os03t0692700-05
Chr03	irgsp1_rep	mRNA	27736390	27741374	.	-	.	ID=Os03t0693000-01;Name=Os03t0693000-01;Locus_id=Os03g0693000;Note=Similar to predicted protein.;Transcript_evidence=AK242149 (DDBJ%2C Best hit);ORF_evidence=NP_564750.1 (RefSeq);InterPro=Domain of unknown function DUF1336 (IPR009769);NIAS_FLcDNA=J075153F01;TENOR=Os03t0693000-01;KEGG=Os03t0693000-01
Chr03	irgsp1_rep	five_prime_UTR	27741245	27741374	.	-	.	Parent=Os03t0693000-01
Chr03	irgsp1_rep	CDS	27740971	27741244	.	-	0	Parent=Os03t0693000-01
Chr03	irgsp1_rep	CDS	27740456	27740542	.	-	2	Parent=Os03t0693000-01
Chr03	irgsp1_rep	CDS	27739920	27740324	.	-	2	Parent=Os03t0693000-01
Chr03	irgsp1_rep	CDS	27739394	27739529	.	-	2	Parent=Os03t0693000-01
Chr03	irgsp1_rep	CDS	27739104	27739266	.	-	1	Parent=Os03t0693000-01
Chr03	irgsp1_rep	CDS	27738181	27738309	.	-	0	Parent=Os03t0693000-01
Chr03	irgsp1_rep	CDS	27737198	27737392	.	-	0	Parent=Os03t0693000-01
Chr03	irgsp1_rep	CDS	27736891	27737013	.	-	0	Parent=Os03t0693000-01
Chr03	irgsp1_rep	CDS	27736703	27736804	.	-	0	Parent=Os03t0693000-01
Chr03	irgsp1_rep	three_prime_UTR	27736390	27736702	.	-	.	Parent=Os03t0693000-01
Chr03	irgsp1_rep	mRNA	27763027	27766036	.	-	.	ID=Os03t0693400-01;Name=Os03t0693400-01;Locus_id=Os03g0693400;Note=Protein of unknown function DUF538 family protein.;Transcript_evidence=AK109332 (DDBJ%2C Best hit);ORF_evidence=Q851J4 (UniProt);InterPro=Protein of unknown function DUF538 (IPR007493);NIAS_FLcDNA=006-201-F11;Expression=AK109332;TENOR=Os03t0693400-01;KEGG=Os03t0693400-01
Chr03	irgsp1_rep	five_prime_UTR	27766033	27766036	.	-	.	Parent=Os03t0693400-01
Chr03	irgsp1_rep	CDS	27765520	27766032	.	-	0	Parent=Os03t0693400-01
Chr03	irgsp1_rep	CDS	27763991	27764011	.	-	0	Parent=Os03t0693400-01
Chr03	irgsp1_rep	three_prime_UTR	27763949	27763990	.	-	.	Parent=Os03t0693400-01
Chr03	irgsp1_rep	three_prime_UTR	27763027	27763233	.	-	.	Parent=Os03t0693400-01
Chr03	irgsp1_rep	mRNA	27775340	27778427	.	+	.	ID=Os03t0693600-01;Name=Os03t0693600-01;Locus_id=Os03g0693600;RAP-DB Gene Symbol Synonym(s)=OsIAGT1%2C OsIAAGLU;RAP-DB Gene Name Synonym(s)=indole-3-acetic acid glucosyltransferase;CGSNL Gene Symbol=IAGLU;CGSNL Gene Name=IAA-GLUCOSE SYNTHASE;Oryzabase Gene Symbol Synonym(s)=OsIAGLU%2C OsIAAGLU%2C IAAGLU%2C OsIAGT1%2C IAGT1;Oryzabase Gene Name Synonym(s)=IAA-glucose synthase%2C indole-3-acetic acid glucosyltransferase%2C IAA-glycosyltransferase;Note=Glucosyltransferase%2C Mediation of auxin homeostasis%2C Regulation of growth and development;Transcript_evidence=Inferred from literature;ORF_evidence=Q851J7;GO=Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213),UDP-glycosyltransferase family%2C conserved site (IPR035595);Manual Curation=December 24%2C 2019;Literature_PMID=31853664,30903268;Oryzabase=12532;TENOR=Os03t0693600-00;Subcellular location=cytoplasm (GO:0005737)
Chr03	irgsp1_rep	CDS	27775340	27776017	.	+	0	Parent=Os03t0693600-01
Chr03	irgsp1_rep	CDS	27777591	27778427	.	+	0	Parent=Os03t0693600-01
Chr03	irgsp1_rep	mRNA	27775346	27778126	.	-	.	ID=Os03t0693650-00;Name=Os03t0693650-00;Locus_id=Os03g0693650;Note=Hypothetical gene.;Transcript_evidence=BT070121 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0693650-00;KEGG=Os03t0693650-00
Chr03	irgsp1_rep	five_prime_UTR	27778040	27778126	.	-	.	Parent=Os03t0693650-00
Chr03	irgsp1_rep	CDS	27777758	27778039	.	-	0	Parent=Os03t0693650-00
Chr03	irgsp1_rep	three_prime_UTR	27777611	27777757	.	-	.	Parent=Os03t0693650-00
Chr03	irgsp1_rep	three_prime_UTR	27775346	27776158	.	-	.	Parent=Os03t0693650-00
Chr03	irgsp1_rep	mRNA	27779100	27780096	.	-	.	ID=Os03t0693700-01;Name=Os03t0693700-01;Locus_id=Os03g0693700;CGSNL Gene Symbol=OXO1;CGSNL Gene Name=OXALATE OXIDASE 1;Oryzabase Gene Symbol Synonym(s)=OsOxO1%2C OsGLP3-3%2C GLP3-3;Oryzabase Gene Name Synonym(s)=oxalate oxidase 1%2C german-like protein 3-3;Note=Similar to Oxalate oxidase 1 (EC 1.2.3.4) (Germin).;Transcript_evidence=AK103716 (DDBJ%2C Best hit);ORF_evidence=Q9FEW6 (UniProt);GO=Cellular Component: apoplast (GO:0048046),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),Germin%2C manganese binding site (IPR019780);NIAS_FLcDNA=J033137P21;Oryzabase=15033;Expression=AK103716;TENOR=Os03t0693700-01;KEGG=Os03t0693700-01 (EC:1.2.3.4)
Chr03	irgsp1_rep	five_prime_UTR	27779972	27780096	.	-	.	Parent=Os03t0693700-01
Chr03	irgsp1_rep	CDS	27779288	27779971	.	-	0	Parent=Os03t0693700-01
Chr03	irgsp1_rep	three_prime_UTR	27779100	27779287	.	-	.	Parent=Os03t0693700-01
Chr03	irgsp1_rep	mRNA	27783892	27784581	.	-	.	ID=Os03t0693800-00;Name=Os03t0693800-00;Locus_id=Os03g0693800;CGSNL Gene Symbol=OXO2;CGSNL Gene Name=OXALATE OXIDASE 2;Oryzabase Gene Symbol Synonym(s)=Osoxo4%2C OsOxO2%2C OsGLP3-4%2C GLP3-4;Oryzabase Gene Name Synonym(s)=oxalate oxidase 4%2C oxalate oxidase 2%2C german-like protein 3-4;Note=Similar to Oxalate oxidase 1 (EC 1.2.3.4) (Germin).;Transcript_evidence=Q851J9 (UniProt);ORF_evidence=Q851J9 (UniProt);GO=Cellular Component: apoplast (GO:0048046),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),Germin%2C manganese binding site (IPR019780);Oryzabase=13480;TENOR=Os03t0693800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	27783892	27784581	.	-	0	Parent=Os03t0693800-00
Chr03	irgsp1_rep	mRNA	27788230	27788913	.	-	.	ID=Os03t0693900-00;Name=Os03t0693900-00;Locus_id=Os03g0693900;CGSNL Gene Symbol=OXO3;CGSNL Gene Name=OXALATE OXIDASE 3;Oryzabase Gene Symbol Synonym(s)=OsOxO3%2C OsGLP3-5%2C GLP3-5;Oryzabase Gene Name Synonym(s)=oxalate oxidase 3%2C german-like protein 3-5;Note=Similar to Oxalate oxidase 1 (EC 1.2.3.4) (Germin).;Transcript_evidence=Q851K0 (UniProt);ORF_evidence=Q851K0 (UniProt);GO=Cellular Component: apoplast (GO:0048046),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),Germin%2C manganese binding site (IPR019780);Oryzabase=15034;TENOR=Os03t0693900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	27788230	27788913	.	-	0	Parent=Os03t0693900-00
Chr03	irgsp1_rep	mRNA	27791020	27792047	.	-	.	ID=Os03t0694000-01;Name=Os03t0694000-01;Locus_id=Os03g0694000;CGSNL Gene Symbol=OXO4;CGSNL Gene Name=OXALATE OXIDASE 4;Oryzabase Gene Symbol Synonym(s)=OsOxO4%2C OsGLP3-6%2C GLP3-6;Oryzabase Gene Name Synonym(s)=oxalate oxidase 4%2C german-like protein 3-6;Note=Similar to Oxalate oxidase 1 (EC 1.2.3.4) (Germin).;Transcript_evidence=AK059872 (DDBJ%2C Best hit);ORF_evidence=C3UZE6 (UniProt);GO=Cellular Component: apoplast (GO:0048046),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),Germin%2C manganese binding site (IPR019780);NIAS_FLcDNA=006-207-F02;Oryzabase=15035;Expression=AK059872;TENOR=Os03t0694000-01;KEGG=Os03t0694000-01 (EC:1.2.3.4)
Chr03	irgsp1_rep	five_prime_UTR	27791901	27792047	.	-	.	Parent=Os03t0694000-01
Chr03	irgsp1_rep	CDS	27791211	27791900	.	-	0	Parent=Os03t0694000-01
Chr03	irgsp1_rep	three_prime_UTR	27791020	27791210	.	-	.	Parent=Os03t0694000-01
Chr03	irgsp1_rep	mRNA	27812191	27815752	.	+	.	ID=Os03t0694500-01;Name=Os03t0694500-01;Locus_id=Os03g0694500;Note=Similar to Permease 1.;Transcript_evidence=AK100981 (DDBJ%2C Best hit);ORF_evidence=NP_001105384.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Xanthine/uracil/vitamin C permease (IPR006043);NIAS_FLcDNA=J023144M20;Expression=AK100981;TENOR=Os03t0694500-01;KEGG=Os03t0694500-01
Chr03	irgsp1_rep	five_prime_UTR	27812191	27812272	.	+	.	Parent=Os03t0694500-01
Chr03	irgsp1_rep	CDS	27812273	27812366	.	+	0	Parent=Os03t0694500-01
Chr03	irgsp1_rep	CDS	27812462	27812559	.	+	2	Parent=Os03t0694500-01
Chr03	irgsp1_rep	CDS	27812641	27812817	.	+	0	Parent=Os03t0694500-01
Chr03	irgsp1_rep	CDS	27812905	27813005	.	+	0	Parent=Os03t0694500-01
Chr03	irgsp1_rep	CDS	27813115	27813190	.	+	1	Parent=Os03t0694500-01
Chr03	irgsp1_rep	CDS	27813291	27813350	.	+	0	Parent=Os03t0694500-01
Chr03	irgsp1_rep	CDS	27813448	27813632	.	+	0	Parent=Os03t0694500-01
Chr03	irgsp1_rep	CDS	27813747	27813843	.	+	1	Parent=Os03t0694500-01
Chr03	irgsp1_rep	CDS	27814265	27814351	.	+	0	Parent=Os03t0694500-01
Chr03	irgsp1_rep	CDS	27814441	27814499	.	+	0	Parent=Os03t0694500-01
Chr03	irgsp1_rep	CDS	27814584	27814675	.	+	1	Parent=Os03t0694500-01
Chr03	irgsp1_rep	CDS	27814782	27814859	.	+	2	Parent=Os03t0694500-01
Chr03	irgsp1_rep	CDS	27815003	27815163	.	+	2	Parent=Os03t0694500-01
Chr03	irgsp1_rep	CDS	27815279	27815497	.	+	0	Parent=Os03t0694500-01
Chr03	irgsp1_rep	three_prime_UTR	27815498	27815752	.	+	.	Parent=Os03t0694500-01
Chr03	irgsp1_rep	mRNA	27814133	27815913	.	-	.	ID=Os03t0694600-01;Name=Os03t0694600-01;Locus_id=Os03g0694600;Note=Hypothetical protein.;Transcript_evidence=AK110834 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-172-A10;Expression=AK110834;TENOR=Os03t0694600-01;KEGG=Os03t0694600-01
Chr03	irgsp1_rep	five_prime_UTR	27815690	27815913	.	-	.	Parent=Os03t0694600-01
Chr03	irgsp1_rep	CDS	27815641	27815689	.	-	0	Parent=Os03t0694600-01
Chr03	irgsp1_rep	CDS	27815225	27815562	.	-	2	Parent=Os03t0694600-01
Chr03	irgsp1_rep	three_prime_UTR	27814133	27815224	.	-	.	Parent=Os03t0694600-01
Chr03	irgsp1_rep	mRNA	27820011	27822893	.	-	.	ID=Os03t0694700-01;Name=Os03t0694700-01;Locus_id=Os03g0694700;Note=Similar to PIF-like orf1.;Transcript_evidence=AK109166 (DDBJ%2C Best hit);ORF_evidence=NP_001151791.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S21 (IPR001911);NIAS_FLcDNA=002-155-H01;Expression=AK109166;TENOR=Os03t0694700-01;KEGG=Os03t0694700-01
Chr03	irgsp1_rep	five_prime_UTR	27822850	27822893	.	-	.	Parent=Os03t0694700-01
Chr03	irgsp1_rep	CDS	27822542	27822849	.	-	0	Parent=Os03t0694700-01
Chr03	irgsp1_rep	CDS	27820229	27820238	.	-	1	Parent=Os03t0694700-01
Chr03	irgsp1_rep	three_prime_UTR	27820011	27820228	.	-	.	Parent=Os03t0694700-01
Chr03	irgsp1_rep	mRNA	27823074	27825616	.	+	.	ID=Os03t0694800-01;Name=Os03t0694800-01;Locus_id=Os03g0694800;Note=Ribosomal protein L18/L5 domain containing protein.;Transcript_evidence=AK071362 (DDBJ%2C Best hit);ORF_evidence=B6U3Y7 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L18/L5 (IPR005484);NIAS_FLcDNA=J023093M09;Expression=AK071362;TENOR=Os03t0694800-01;KEGG=Os03t0694800-01
Chr03	irgsp1_rep	five_prime_UTR	27823074	27825157	.	+	.	Parent=Os03t0694800-01
Chr03	irgsp1_rep	CDS	27825158	27825502	.	+	0	Parent=Os03t0694800-01
Chr03	irgsp1_rep	three_prime_UTR	27825503	27825616	.	+	.	Parent=Os03t0694800-01
Chr03	irgsp1_rep	mRNA	27826866	27834384	.	+	.	ID=Os03t0694900-01;Name=Os03t0694900-01;Locus_id=Os03g0694900;CGSNL Gene Symbol=VALRS1;CGSNL Gene Name=VAL-TRNA SYNTHETASE 1;Oryzabase Gene Symbol Synonym(s)=OsValRS1%2C ValRS1;Oryzabase Gene Name Synonym(s)=Valine:tRNA ligase%2C Val-tRNA Synthetase 1;Note=Similar to Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase) (ValRS).;Transcript_evidence=AK121157 (DDBJ%2C Best hit);ORF_evidence=Q7G2B1 (UniProt);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: valyl-tRNA aminoacylation (GO:0006438),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: valine-tRNA ligase activity (GO:0004832),Molecular Function: ATP binding (GO:0005524);InterPro=Aminoacyl-tRNA synthetase%2C class I%2C conserved site (IPR001412),Aminoacyl-tRNA synthetase%2C class Ia (IPR002300),Valyl-tRNA synthetase (IPR002303),Valyl/Leucyl/Isoleucyl-tRNA synthetase%2C class Ia%2C editing domain (IPR009008),Aminoacyl-tRNA synthetase%2C class 1a%2C anticodon-binding (IPR009080),tRNA-binding arm (IPR010978),Valyl/Leucyl/Isoleucyl-tRNA synthetase%2C class I%2C anticodon-binding (IPR013155),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J023079F18;Oryzabase=17715;Expression=AK121157;TENOR=Os03t0694900-01;KEGG=Os03t0694900-01 (EC:6.1.1.9)
Chr03	irgsp1_rep	five_prime_UTR	27826866	27827052	.	+	.	Parent=Os03t0694900-01
Chr03	irgsp1_rep	five_prime_UTR	27827204	27827228	.	+	.	Parent=Os03t0694900-01
Chr03	irgsp1_rep	CDS	27827229	27827309	.	+	0	Parent=Os03t0694900-01
Chr03	irgsp1_rep	CDS	27827491	27827550	.	+	0	Parent=Os03t0694900-01
Chr03	irgsp1_rep	CDS	27827669	27827838	.	+	0	Parent=Os03t0694900-01
Chr03	irgsp1_rep	CDS	27827937	27828009	.	+	1	Parent=Os03t0694900-01
Chr03	irgsp1_rep	CDS	27828132	27828197	.	+	0	Parent=Os03t0694900-01
Chr03	irgsp1_rep	CDS	27828298	27828381	.	+	0	Parent=Os03t0694900-01
Chr03	irgsp1_rep	CDS	27828717	27828794	.	+	0	Parent=Os03t0694900-01
Chr03	irgsp1_rep	CDS	27829045	27829128	.	+	0	Parent=Os03t0694900-01
Chr03	irgsp1_rep	CDS	27829480	27829559	.	+	0	Parent=Os03t0694900-01
Chr03	irgsp1_rep	CDS	27829722	27829779	.	+	1	Parent=Os03t0694900-01
Chr03	irgsp1_rep	CDS	27829871	27830173	.	+	0	Parent=Os03t0694900-01
Chr03	irgsp1_rep	CDS	27830263	27830433	.	+	0	Parent=Os03t0694900-01
Chr03	irgsp1_rep	CDS	27831007	27831197	.	+	0	Parent=Os03t0694900-01
Chr03	irgsp1_rep	CDS	27831320	27831722	.	+	1	Parent=Os03t0694900-01
Chr03	irgsp1_rep	CDS	27832282	27832533	.	+	0	Parent=Os03t0694900-01
Chr03	irgsp1_rep	CDS	27832613	27833113	.	+	0	Parent=Os03t0694900-01
Chr03	irgsp1_rep	CDS	27833217	27833314	.	+	0	Parent=Os03t0694900-01
Chr03	irgsp1_rep	CDS	27833436	27833535	.	+	1	Parent=Os03t0694900-01
Chr03	irgsp1_rep	CDS	27833758	27833903	.	+	0	Parent=Os03t0694900-01
Chr03	irgsp1_rep	CDS	27834009	27834174	.	+	1	Parent=Os03t0694900-01
Chr03	irgsp1_rep	three_prime_UTR	27834175	27834384	.	+	.	Parent=Os03t0694900-01
Chr03	irgsp1_rep	mRNA	27846706	27847581	.	+	.	ID=Os03t0695400-01;Name=Os03t0695400-01;Locus_id=Os03g0695400;Note=Ankyrin repeat containing protein.;Transcript_evidence=AK070048 (DDBJ%2C Best hit);ORF_evidence=D5G0H2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J023040O04;Expression=AK070048;TENOR=Os03t0695400-01;KEGG=Os03t0695400-01
Chr03	irgsp1_rep	five_prime_UTR	27846706	27846707	.	+	.	Parent=Os03t0695400-01
Chr03	irgsp1_rep	CDS	27846708	27847196	.	+	0	Parent=Os03t0695400-01
Chr03	irgsp1_rep	three_prime_UTR	27847197	27847581	.	+	.	Parent=Os03t0695400-01
Chr03	irgsp1_rep	mRNA	27851068	27852859	.	-	.	ID=Os03t0695425-01;Name=Os03t0695425-01;Locus_id=Os03g0695425;Note=Conserved hypothetical protein.;Transcript_evidence=AK288195 (DDBJ%2C Best hit);ORF_evidence=Q5JLA4 (UniProt);NIAS_FLcDNA=J090007J06;TENOR=Os03t0695425-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	27852859	27852859	.	-	.	Parent=Os03t0695425-01
Chr03	irgsp1_rep	CDS	27852448	27852858	.	-	0	Parent=Os03t0695425-01
Chr03	irgsp1_rep	three_prime_UTR	27851068	27852447	.	-	.	Parent=Os03t0695425-01
Chr03	irgsp1_rep	mRNA	27854761	27858498	.	+	.	ID=Os03t0695500-01;Name=Os03t0695500-01;Locus_id=Os03g0695500;Note=Similar to predicted protein.;Transcript_evidence=AK287764 (DDBJ%2C Best hit);ORF_evidence=NP_001050975.2 (RefSeq);InterPro=Protein of unknown function DUF1517 (IPR010903);NIAS_FLcDNA=J065163E14;TENOR=Os03t0695500-01;KEGG=Os03t0695500-01
Chr03	irgsp1_rep	five_prime_UTR	27854761	27854799	.	+	.	Parent=Os03t0695500-01
Chr03	irgsp1_rep	CDS	27854800	27855465	.	+	0	Parent=Os03t0695500-01
Chr03	irgsp1_rep	CDS	27855938	27856040	.	+	0	Parent=Os03t0695500-01
Chr03	irgsp1_rep	CDS	27856571	27856626	.	+	2	Parent=Os03t0695500-01
Chr03	irgsp1_rep	CDS	27856931	27857095	.	+	0	Parent=Os03t0695500-01
Chr03	irgsp1_rep	CDS	27857693	27857806	.	+	0	Parent=Os03t0695500-01
Chr03	irgsp1_rep	CDS	27858206	27858298	.	+	0	Parent=Os03t0695500-01
Chr03	irgsp1_rep	three_prime_UTR	27858299	27858498	.	+	.	Parent=Os03t0695500-01
Chr03	irgsp1_rep	mRNA	27858693	27861038	.	-	.	ID=Os03t0695600-01;Name=Os03t0695600-01;Locus_id=Os03g0695600;Oryzabase Gene Symbol Synonym(s)=OsPBD1;Oryzabase Gene Name Synonym(s)=20S proteasome beta4 subunit;Note=Proteasome subunit beta type 2 (EC 3.4.25.1) (20S proteasome alpha subunit D) (20S proteasome subunit beta-4).;Transcript_evidence=AK061228 (DDBJ%2C Best hit);ORF_evidence=A2XKY8 (UniProt);GO=Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603),Cellular Component: proteasome core complex (GO:0005839),Molecular Function: endopeptidase activity (GO:0004175),Molecular Function: threonine-type endopeptidase activity (GO:0004298);InterPro=Proteasome%2C subunit alpha/beta (IPR001353),Proteasome%2C beta-type subunit%2C conserved site (IPR016050),Proteasome B-type subunit (IPR023333);NIAS_FLcDNA=006-211-A02;Oryzabase=14503;TENOR=Os03t0695600-01
Chr03	irgsp1_rep	five_prime_UTR	27860908	27861038	.	-	.	Parent=Os03t0695600-01
Chr03	irgsp1_rep	CDS	27860750	27860907	.	-	0	Parent=Os03t0695600-01
Chr03	irgsp1_rep	CDS	27860453	27860576	.	-	1	Parent=Os03t0695600-01
Chr03	irgsp1_rep	CDS	27858891	27859247	.	-	0	Parent=Os03t0695600-01
Chr03	irgsp1_rep	three_prime_UTR	27858693	27858890	.	-	.	Parent=Os03t0695600-01
Chr03	irgsp1_rep	mRNA	27858755	27859019	.	-	.	ID=Os03t0695600-02;Name=Os03t0695600-02;Locus_id=Os03g0695600;Oryzabase Gene Symbol Synonym(s)=OsPBD1;Oryzabase Gene Name Synonym(s)=20S proteasome beta4 subunit;Note=Similar to Proteasome subunit beta type-2.;Transcript_evidence=AK060531 (DDBJ%2C Best hit);ORF_evidence=A2XKY8 (UniProt);NIAS_FLcDNA=001-021-A02;Oryzabase=14503;Expression=AK060531;TENOR=Os03t0695600-02;KEGG=Os03t0695600-02
Chr03	irgsp1_rep	CDS	27858891	27859019	.	-	0	Parent=Os03t0695600-02
Chr03	irgsp1_rep	three_prime_UTR	27858755	27858890	.	-	.	Parent=Os03t0695600-02
Chr03	irgsp1_rep	mRNA	27858696	27860998	.	-	.	ID=Os03t0695600-03;Name=Os03t0695600-03;Locus_id=Os03g0695600;Oryzabase Gene Symbol Synonym(s)=OsPBD1;Oryzabase Gene Name Synonym(s)=20S proteasome beta4 subunit;Note=Proteasome subunit beta type 2 (EC 3.4.25.1) (20S proteasome alpha subunit D) (20S proteasome subunit beta-4).;Transcript_evidence=AK099128 (DDBJ%2C Best hit);ORF_evidence=A2XKY8 (UniProt);GO=Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603),Cellular Component: proteasome core complex (GO:0005839),Molecular Function: endopeptidase activity (GO:0004175),Molecular Function: threonine-type endopeptidase activity (GO:0004298);InterPro=Proteasome%2C subunit alpha/beta (IPR001353),Proteasome%2C beta-type subunit%2C conserved site (IPR016050),Proteasome B-type subunit (IPR023333);NIAS_FLcDNA=J023041C17;Oryzabase=14503;TENOR=Os03t0695600-03
Chr03	irgsp1_rep	five_prime_UTR	27860908	27860998	.	-	.	Parent=Os03t0695600-03
Chr03	irgsp1_rep	CDS	27860750	27860907	.	-	0	Parent=Os03t0695600-03
Chr03	irgsp1_rep	CDS	27860453	27860576	.	-	1	Parent=Os03t0695600-03
Chr03	irgsp1_rep	CDS	27858891	27859247	.	-	0	Parent=Os03t0695600-03
Chr03	irgsp1_rep	three_prime_UTR	27858696	27858890	.	-	.	Parent=Os03t0695600-03
Chr03	irgsp1_rep	mRNA	27861769	27864057	.	-	.	ID=Os03t0695700-01;Name=Os03t0695700-01;Locus_id=Os03g0695700;CGSNL Gene Symbol=CBSCLC4;CGSNL Gene Name=CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OsCBSCLC4;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSCLC4%2C CBS domain containing protein OsCBSCLC4%2C CBS domain containing protein 4;Note=Similar to Chloride channel protein CLC-d (AtCLC-d).;Transcript_evidence=AK059537 (DDBJ%2C Best hit);ORF_evidence=E9LFE5 (UniProt);GO=Biological Process: chloride transport (GO:0006821),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: ion channel activity (GO:0005216),Molecular Function: voltage-gated chloride channel activity (GO:0005247),Molecular Function: protein binding (GO:0005515);InterPro=Cystathionine beta-synthase%2C core (IPR000644),Chloride channel%2C voltage gated (IPR001807),Chloride channel%2C core (IPR014743);NIAS_FLcDNA=001-029-E03;Oryzabase=10333;Expression=AK059537;TENOR=Os03t0695700-01;KEGG=Os03t0695700-01
Chr03	irgsp1_rep	five_prime_UTR	27864057	27864057	.	-	.	Parent=Os03t0695700-01
Chr03	irgsp1_rep	CDS	27863979	27864056	.	-	0	Parent=Os03t0695700-01
Chr03	irgsp1_rep	CDS	27863772	27863903	.	-	0	Parent=Os03t0695700-01
Chr03	irgsp1_rep	CDS	27863593	27863670	.	-	0	Parent=Os03t0695700-01
Chr03	irgsp1_rep	CDS	27863427	27863482	.	-	0	Parent=Os03t0695700-01
Chr03	irgsp1_rep	CDS	27863266	27863343	.	-	1	Parent=Os03t0695700-01
Chr03	irgsp1_rep	CDS	27863027	27863183	.	-	1	Parent=Os03t0695700-01
Chr03	irgsp1_rep	CDS	27862827	27862928	.	-	0	Parent=Os03t0695700-01
Chr03	irgsp1_rep	CDS	27862690	27862736	.	-	0	Parent=Os03t0695700-01
Chr03	irgsp1_rep	CDS	27862192	27862273	.	-	1	Parent=Os03t0695700-01
Chr03	irgsp1_rep	three_prime_UTR	27861769	27862191	.	-	.	Parent=Os03t0695700-01
Chr03	irgsp1_rep	mRNA	27877943	27882348	.	+	.	ID=Os03t0696000-01;Name=Os03t0696000-01;Locus_id=Os03g0696000;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK109661 (DDBJ%2C Best hit);ORF_evidence=XP_002466626.1 (RefSeq);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=002-141-E10;Expression=AK109661;TENOR=Os03t0696000-01;KEGG=Os03t0696000-01
Chr03	irgsp1_rep	five_prime_UTR	27877943	27878053	.	+	.	Parent=Os03t0696000-01
Chr03	irgsp1_rep	CDS	27878054	27878659	.	+	0	Parent=Os03t0696000-01
Chr03	irgsp1_rep	CDS	27881931	27882002	.	+	0	Parent=Os03t0696000-01
Chr03	irgsp1_rep	CDS	27882087	27882089	.	+	0	Parent=Os03t0696000-01
Chr03	irgsp1_rep	three_prime_UTR	27882090	27882348	.	+	.	Parent=Os03t0696000-01
Chr03	irgsp1_rep	mRNA	27883416	27883842	.	-	.	ID=Os03t0696150-00;Name=Os03t0696150-00;Locus_id=Os03g0696150;Note=Similar to predicted protein.;Transcript_evidence=EU963966 (DDBJ);ORF_evidence=Q851D6 (UniProt);TENOR=Os03t0696150-00;KEGG=Os03t0696150-00
Chr03	irgsp1_rep	five_prime_UTR	27883779	27883842	.	-	.	Parent=Os03t0696150-00
Chr03	irgsp1_rep	CDS	27883416	27883778	.	-	0	Parent=Os03t0696150-00
Chr03	irgsp1_rep	mRNA	27890692	27894467	.	+	.	ID=Os03t0696300-01;Name=Os03t0696300-01;Locus_id=Os03g0696300;CGSNL Gene Symbol=HAP2D;CGSNL Gene Name=HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX;Oryzabase Gene Symbol Synonym(s)=OsHAP2D%2C NF-YA%2C CBF-B%2C NF-YA4%2C OsNF-YA4%2C NFYA4;Oryzabase Gene Name Synonym(s)=NUCLEAR FACTOR-Y subunit A4%2C NUCLEAR FACTOR-Y subunit NF-YA4%2C NF-YA transcription factor 4%2C NF-YA subunit 4%2C NF-YA family 4;Note=Similar to Nuclear transcription factor Y subunit A-1.;Transcript_evidence=AK069854 (DDBJ%2C Best hit);ORF_evidence=B6TAR1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Cellular Component: CCAAT-binding factor complex (GO:0016602),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=CCAAT-binding transcription factor%2C subunit B (IPR001289),CCAAT-binding factor%2C conserved site (IPR018362);NIAS_FLcDNA=J023036P10;Oryzabase=8476;TENOR=Os03t0696300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	27890692	27891306	.	+	.	Parent=Os03t0696300-01
Chr03	irgsp1_rep	five_prime_UTR	27891477	27891480	.	+	.	Parent=Os03t0696300-01
Chr03	irgsp1_rep	CDS	27891481	27891724	.	+	0	Parent=Os03t0696300-01
Chr03	irgsp1_rep	CDS	27892412	27892515	.	+	2	Parent=Os03t0696300-01
Chr03	irgsp1_rep	CDS	27892636	27892707	.	+	0	Parent=Os03t0696300-01
Chr03	irgsp1_rep	CDS	27893267	27893440	.	+	0	Parent=Os03t0696300-01
Chr03	irgsp1_rep	CDS	27893639	27893762	.	+	0	Parent=Os03t0696300-01
Chr03	irgsp1_rep	CDS	27893847	27893911	.	+	2	Parent=Os03t0696300-01
Chr03	irgsp1_rep	three_prime_UTR	27893912	27894467	.	+	.	Parent=Os03t0696300-01
Chr03	irgsp1_rep	mRNA	27893406	27894329	.	+	.	ID=Os03t0696300-02;Name=Os03t0696300-02;Locus_id=Os03g0696300;CGSNL Gene Symbol=HAP2D;CGSNL Gene Name=HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX;Oryzabase Gene Symbol Synonym(s)=OsHAP2D%2C NF-YA%2C CBF-B%2C NF-YA4%2C OsNF-YA4%2C NFYA4;Oryzabase Gene Name Synonym(s)=NUCLEAR FACTOR-Y subunit A4%2C NUCLEAR FACTOR-Y subunit NF-YA4%2C NF-YA transcription factor 4%2C NF-YA subunit 4%2C NF-YA family 4;Note=Similar to nuclear transcription factor Y subunit A-1.;Transcript_evidence=AK099549 (DDBJ%2C Best hit);ORF_evidence=B6TAR1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=CCAAT-binding transcription factor%2C subunit B (IPR001289);NIAS_FLcDNA=J013033E22;Oryzabase=8476;Expression=AK099549;TENOR=Os03t0696300-02;KEGG=Os03t0696300-02
Chr03	irgsp1_rep	five_prime_UTR	27893406	27893407	.	+	.	Parent=Os03t0696300-02
Chr03	irgsp1_rep	CDS	27893408	27893440	.	+	0	Parent=Os03t0696300-02
Chr03	irgsp1_rep	CDS	27893639	27893762	.	+	0	Parent=Os03t0696300-02
Chr03	irgsp1_rep	CDS	27893847	27893911	.	+	2	Parent=Os03t0696300-02
Chr03	irgsp1_rep	three_prime_UTR	27893912	27894329	.	+	.	Parent=Os03t0696300-02
Chr03	irgsp1_rep	mRNA	27943407	27943897	.	-	.	ID=Os03t0696850-00;Name=Os03t0696850-00;Locus_id=Os03g0696850;Note=Non-protein coding transcript.;Transcript_evidence=AK374302 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0696850-00
Chr03	irgsp1_rep	exon	27943693	27943897	.	-	.	Parent=Os03t0696850-00
Chr03	irgsp1_rep	exon	27943407	27943560	.	-	.	Parent=Os03t0696850-00
Chr03	irgsp1_rep	mRNA	27943411	27945040	.	+	.	ID=Os03t0697200-00;Name=Os03t0697200-00;Locus_id=Os03g0697200;CGSNL Gene Symbol=LOGL4;CGSNL Gene Name=LONELY GUY LIKE PHOSPHORIBOHYDROLASE 4;Oryzabase Gene Symbol Synonym(s)=LOGL4;Oryzabase Gene Name Synonym(s)=LOG LIKE phosphoribohydrolase 4%2C LOG LIKE 4;Note=Similar to carboxy-lyase.;Transcript_evidence=BT060609 (DDBJ);ORF_evidence=NP_196248.3 (RefSeq);InterPro=Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG (IPR005269);Oryzabase=9849;TENOR=Os03t0697200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	27943411	27943554	.	+	0	Parent=Os03t0697200-00
Chr03	irgsp1_rep	CDS	27943797	27943919	.	+	0	Parent=Os03t0697200-00
Chr03	irgsp1_rep	CDS	27944186	27944399	.	+	0	Parent=Os03t0697200-00
Chr03	irgsp1_rep	CDS	27944473	27944547	.	+	2	Parent=Os03t0697200-00
Chr03	irgsp1_rep	CDS	27944813	27944988	.	+	2	Parent=Os03t0697200-00
Chr03	irgsp1_rep	three_prime_UTR	27944989	27945040	.	+	.	Parent=Os03t0697200-00
Chr03	irgsp1_rep	mRNA	27955836	27956968	.	-	.	ID=Os03t0697466-00;Name=Os03t0697466-00;Locus_id=Os03g0697466;Note=Hypothetical protein.;Transcript_evidence=tplb0034e17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0697466-00
Chr03	irgsp1_rep	five_prime_UTR	27956602	27956968	.	-	.	Parent=Os03t0697466-00
Chr03	irgsp1_rep	CDS	27956338	27956601	.	-	0	Parent=Os03t0697466-00
Chr03	irgsp1_rep	three_prime_UTR	27956051	27956337	.	-	.	Parent=Os03t0697466-00
Chr03	irgsp1_rep	three_prime_UTR	27955836	27955990	.	-	.	Parent=Os03t0697466-00
Chr03	irgsp1_rep	mRNA	27983768	27986675	.	+	.	ID=Os03t0697833-00;Name=Os03t0697833-00;Locus_id=Os03g0697833;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8APZ8 (UniProt);TENOR=Os03t0697833-00
Chr03	irgsp1_rep	CDS	27983768	27985282	.	+	0	Parent=Os03t0697833-00
Chr03	irgsp1_rep	CDS	27985540	27985627	.	+	0	Parent=Os03t0697833-00
Chr03	irgsp1_rep	CDS	27986413	27986675	.	+	2	Parent=Os03t0697833-00
Chr03	irgsp1_rep	mRNA	27983787	27985263	.	-	.	ID=Os03t0698066-00;Name=Os03t0698066-00;Locus_id=Os03g0698066;Note=Non-protein coding transcript.;Transcript_evidence=tplb0034e17 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os03t0698066-00
Chr03	irgsp1_rep	exon	27984095	27985263	.	-	.	Parent=Os03t0698066-00
Chr03	irgsp1_rep	exon	27983787	27984027	.	-	.	Parent=Os03t0698066-00
Chr03	irgsp1_rep	mRNA	27990038	27994905	.	-	.	ID=Os03t0698350-00;Name=Os03t0698350-00;Locus_id=Os03g0698350;Note=Similar to ATATH9 (ABC2 homolog 9).;Transcript_evidence=ab initio prediction;ORF_evidence=NP_565923.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=ABC-1 (IPR004147),Protein kinase-like domain (IPR011009);TENOR=Os03t0698350-00;KEGG=Os03t0698350-00
Chr03	irgsp1_rep	CDS	27994591	27994905	.	-	0	Parent=Os03t0698350-00
Chr03	irgsp1_rep	CDS	27994348	27994473	.	-	0	Parent=Os03t0698350-00
Chr03	irgsp1_rep	CDS	27993999	27994094	.	-	0	Parent=Os03t0698350-00
Chr03	irgsp1_rep	CDS	27993755	27993855	.	-	0	Parent=Os03t0698350-00
Chr03	irgsp1_rep	CDS	27992592	27992628	.	-	1	Parent=Os03t0698350-00
Chr03	irgsp1_rep	CDS	27992026	27992244	.	-	0	Parent=Os03t0698350-00
Chr03	irgsp1_rep	CDS	27991833	27991944	.	-	0	Parent=Os03t0698350-00
Chr03	irgsp1_rep	CDS	27991321	27991412	.	-	2	Parent=Os03t0698350-00
Chr03	irgsp1_rep	CDS	27991056	27991235	.	-	0	Parent=Os03t0698350-00
Chr03	irgsp1_rep	CDS	27990038	27990073	.	-	0	Parent=Os03t0698350-00
Chr03	irgsp1_rep	mRNA	27989538	27989824	.	-	.	ID=Os03t0698400-01;Name=Os03t0698400-01;Locus_id=Os03g0698400;Note=Non-protein coding transcript.;Transcript_evidence=AK058933 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-009-D12;TENOR=Os03t0698400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	exon	27989538	27989824	.	-	.	Parent=Os03t0698400-01
Chr03	irgsp1_rep	mRNA	27997815	28001365	.	+	.	ID=Os03t0698500-01;Name=Os03t0698500-01;Locus_id=Os03g0698500;Note=Similar to protein yippee-like.;Transcript_evidence=AK121032 (DDBJ%2C Best hit);ORF_evidence=NP_001150917.1 (RefSeq);InterPro=Yippee-like protein (IPR004910);NIAS_FLcDNA=J023050J15;Expression=AK121032;TENOR=Os03t0698500-01;KEGG=Os03t0698500-01
Chr03	irgsp1_rep	five_prime_UTR	27997815	27998130	.	+	.	Parent=Os03t0698500-01
Chr03	irgsp1_rep	CDS	27998131	27998541	.	+	0	Parent=Os03t0698500-01
Chr03	irgsp1_rep	three_prime_UTR	27998542	28001365	.	+	.	Parent=Os03t0698500-01
Chr03	irgsp1_rep	mRNA	27997896	28001365	.	+	.	ID=Os03t0698500-02;Name=Os03t0698500-02;Locus_id=Os03g0698500;Note=Similar to Yippee-like protein 3.;Transcript_evidence=AK109500 (DDBJ%2C Best hit);ORF_evidence=NP_001150917.1 (RefSeq);InterPro=Yippee-like protein (IPR004910);NIAS_FLcDNA=001-207-F05;Expression=AK109500;TENOR=Os03t0698500-02;KEGG=Os03t0698500-02
Chr03	irgsp1_rep	five_prime_UTR	27997896	27998130	.	+	.	Parent=Os03t0698500-02
Chr03	irgsp1_rep	CDS	27998131	27998226	.	+	0	Parent=Os03t0698500-02
Chr03	irgsp1_rep	CDS	27998361	27998404	.	+	0	Parent=Os03t0698500-02
Chr03	irgsp1_rep	CDS	28000611	28000719	.	+	1	Parent=Os03t0698500-02
Chr03	irgsp1_rep	CDS	28000798	28000853	.	+	0	Parent=Os03t0698500-02
Chr03	irgsp1_rep	CDS	28000993	28001077	.	+	1	Parent=Os03t0698500-02
Chr03	irgsp1_rep	three_prime_UTR	28001078	28001365	.	+	.	Parent=Os03t0698500-02
Chr03	irgsp1_rep	mRNA	28008697	28012203	.	+	.	ID=Os03t0698800-01;Name=Os03t0698800-01;Locus_id=Os03g0698800;CGSNL Gene Symbol=C3H24;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 24;Oryzabase Gene Symbol Synonym(s)=OsC3H24%2C OsTZF3%2C TZF3%2C OsCCCH-Zn-8%2C CCCH-Zn-8;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 24%2C Tandem zinc finger protein 3;Note=Ankyrin domain containing protein.;Transcript_evidence=AK120638 (DDBJ%2C Best hit);ORF_evidence=A2Q3L5 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571),Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J013153K17;Oryzabase=8588;Expression=AK120638;TENOR=Os03t0698800-01;KEGG=Os03t0698800-01
Chr03	irgsp1_rep	five_prime_UTR	28008697	28009291	.	+	.	Parent=Os03t0698800-01
Chr03	irgsp1_rep	CDS	28009292	28011586	.	+	0	Parent=Os03t0698800-01
Chr03	irgsp1_rep	three_prime_UTR	28011587	28012203	.	+	.	Parent=Os03t0698800-01
Chr03	irgsp1_rep	mRNA	28015015	28018854	.	-	.	ID=Os03t0698900-01;Name=Os03t0698900-01;Locus_id=Os03g0698900;Note=Alkaline phytoceramidase family protein.;Transcript_evidence=AK073303 (DDBJ%2C Best hit);ORF_evidence=NP_567660.1 (RefSeq);GO=Biological Process: ceramide metabolic process (GO:0006672),Cellular Component: integral to membrane (GO:0016021),Molecular Function: hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds%2C in linear amides (GO:0016811);InterPro=Ceramidase (IPR008901);NIAS_FLcDNA=J033024P22;TENOR=Os03t0698900-01
Chr03	irgsp1_rep	five_prime_UTR	28018739	28018854	.	-	.	Parent=Os03t0698900-01
Chr03	irgsp1_rep	five_prime_UTR	28017842	28017943	.	-	.	Parent=Os03t0698900-01
Chr03	irgsp1_rep	CDS	28017585	28017841	.	-	0	Parent=Os03t0698900-01
Chr03	irgsp1_rep	CDS	28015358	28015874	.	-	1	Parent=Os03t0698900-01
Chr03	irgsp1_rep	three_prime_UTR	28015015	28015357	.	-	.	Parent=Os03t0698900-01
Chr03	irgsp1_rep	mRNA	28015015	28018832	.	-	.	ID=Os03t0698900-02;Name=Os03t0698900-02;Locus_id=Os03g0698900;Note=Alkaline phytoceramidase family protein.;Transcript_evidence=AK103953 (DDBJ%2C Best hit);ORF_evidence=NP_567660.1 (RefSeq);GO=Biological Process: ceramide metabolic process (GO:0006672),Cellular Component: integral to membrane (GO:0016021),Molecular Function: hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds%2C in linear amides (GO:0016811);InterPro=Ceramidase (IPR008901);NIAS_FLcDNA=001-014-G02;TENOR=Os03t0698900-02
Chr03	irgsp1_rep	five_prime_UTR	28018739	28018832	.	-	.	Parent=Os03t0698900-02
Chr03	irgsp1_rep	five_prime_UTR	28017842	28017943	.	-	.	Parent=Os03t0698900-02
Chr03	irgsp1_rep	CDS	28017585	28017841	.	-	0	Parent=Os03t0698900-02
Chr03	irgsp1_rep	CDS	28015358	28015874	.	-	1	Parent=Os03t0698900-02
Chr03	irgsp1_rep	three_prime_UTR	28015015	28015357	.	-	.	Parent=Os03t0698900-02
Chr03	irgsp1_rep	mRNA	28021888	28022831	.	-	.	ID=Os03t0699000-01;Name=Os03t0699000-01;Locus_id=Os03g0699000;Oryzabase Gene Symbol Synonym(s)=ole18;Oryzabase Gene Name Synonym(s)=18 kDa oleosin%2C Oleosin KD18;Note=Oleosin 18 kDa (OSE721).;Transcript_evidence=AK243015 (DDBJ%2C Best hit);ORF_evidence=Q10EK7 (UniProt);GO=Cellular Component: monolayer-surrounded lipid storage body (GO:0012511),Cellular Component: integral to membrane (GO:0016021);InterPro=Oleosin (IPR000136);NIAS_FLcDNA=J090098H03;Oryzabase=13766;TENOR=Os03t0699000-01;KEGG=Os03t0699000-01
Chr03	irgsp1_rep	five_prime_UTR	28022769	28022831	.	-	.	Parent=Os03t0699000-01
Chr03	irgsp1_rep	CDS	28022250	28022768	.	-	0	Parent=Os03t0699000-01
Chr03	irgsp1_rep	three_prime_UTR	28021888	28022249	.	-	.	Parent=Os03t0699000-01
Chr03	irgsp1_rep	mRNA	28023221	28024490	.	-	.	ID=Os03t0699100-01;Name=Os03t0699100-01;Locus_id=Os03g0699100;Oryzabase Gene Symbol Synonym(s)=OsWD40-83%2C WD40-83%2C OsCDT2%2C CDT2;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK110715 (DDBJ%2C Best hit);ORF_evidence=B6TYC2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=002-170-D05;Oryzabase=10764;Expression=AK110715;TENOR=Os03t0699100-01;KEGG=Os03t0699100-01
Chr03	irgsp1_rep	five_prime_UTR	28024490	28024490	.	-	.	Parent=Os03t0699100-01
Chr03	irgsp1_rep	CDS	28024427	28024489	.	-	0	Parent=Os03t0699100-01
Chr03	irgsp1_rep	CDS	28024244	28024312	.	-	0	Parent=Os03t0699100-01
Chr03	irgsp1_rep	CDS	28024089	28024156	.	-	0	Parent=Os03t0699100-01
Chr03	irgsp1_rep	CDS	28023947	28023995	.	-	1	Parent=Os03t0699100-01
Chr03	irgsp1_rep	CDS	28023249	28023737	.	-	0	Parent=Os03t0699100-01
Chr03	irgsp1_rep	three_prime_UTR	28023221	28023248	.	-	.	Parent=Os03t0699100-01
Chr03	irgsp1_rep	mRNA	28029406	28034964	.	+	.	ID=Os03t0699200-01;Name=Os03t0699200-01;Locus_id=Os03g0699200;Note=BRCT domain containing protein.;Transcript_evidence=AK099383 (DDBJ%2C Best hit),AK066652 (DDBJ%2C Best hit);ORF_evidence=B6SHE5 (UniProt);GO=Biological Process: ribosome biogenesis (GO:0042254),Cellular Component: intracellular (GO:0005622),Cellular Component: nucleolus (GO:0005730);InterPro=BRCT (IPR001357),Pescadillo (IPR010613);NIAS_FLcDNA=J033074F24,J013069A12;Expression=AK099383;TENOR=Os03t0699200-01;KEGG=Os03t0699200-01
Chr03	irgsp1_rep	five_prime_UTR	28029406	28029473	.	+	.	Parent=Os03t0699200-01
Chr03	irgsp1_rep	CDS	28029474	28029497	.	+	0	Parent=Os03t0699200-01
Chr03	irgsp1_rep	CDS	28029594	28029679	.	+	0	Parent=Os03t0699200-01
Chr03	irgsp1_rep	CDS	28029996	28030124	.	+	1	Parent=Os03t0699200-01
Chr03	irgsp1_rep	CDS	28030842	28030961	.	+	1	Parent=Os03t0699200-01
Chr03	irgsp1_rep	CDS	28031043	28031168	.	+	1	Parent=Os03t0699200-01
Chr03	irgsp1_rep	CDS	28031385	28031469	.	+	1	Parent=Os03t0699200-01
Chr03	irgsp1_rep	CDS	28031574	28031684	.	+	0	Parent=Os03t0699200-01
Chr03	irgsp1_rep	CDS	28032251	28032344	.	+	0	Parent=Os03t0699200-01
Chr03	irgsp1_rep	CDS	28032484	28032764	.	+	2	Parent=Os03t0699200-01
Chr03	irgsp1_rep	CDS	28032876	28032983	.	+	0	Parent=Os03t0699200-01
Chr03	irgsp1_rep	CDS	28033199	28033320	.	+	0	Parent=Os03t0699200-01
Chr03	irgsp1_rep	CDS	28033861	28034071	.	+	1	Parent=Os03t0699200-01
Chr03	irgsp1_rep	CDS	28034185	28034412	.	+	0	Parent=Os03t0699200-01
Chr03	irgsp1_rep	CDS	28034627	28034716	.	+	0	Parent=Os03t0699200-01
Chr03	irgsp1_rep	three_prime_UTR	28034717	28034964	.	+	.	Parent=Os03t0699200-01
Chr03	irgsp1_rep	mRNA	28035503	28038964	.	+	.	ID=Os03t0699300-01;Name=Os03t0699300-01;Locus_id=Os03g0699300;CGSNL Gene Symbol=ASS1;CGSNL Gene Name=SAMP SYNTHETASE 1;Oryzabase Gene Symbol Synonym(s)=OsASS1;Oryzabase Gene Name Synonym(s)=SAMP synthetase 1;Note=Similar to Adenylosuccinate synthetase%2C chloroplast precursor (EC 6.3.4.4) (IMP-- aspartate ligase) (AdSS) (AMPSase).;Transcript_evidence=AK120407 (DDBJ%2C Best hit);ORF_evidence=Q851S8 (UniProt);GO=Biological Process: purine nucleotide biosynthetic process (GO:0006164),Cellular Component: cytoplasm (GO:0005737),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: adenylosuccinate synthase activity (GO:0004019),Molecular Function: GTP binding (GO:0005525);InterPro=Adenylosuccinate synthetase (IPR001114),Adenylosuccinate synthase%2C active site (IPR018220);NIAS_FLcDNA=J013091H09;Oryzabase=22930;Expression=AK120407;TENOR=Os03t0699300-01;KEGG=Os03t0699300-01 (EC:6.3.4.4)
Chr03	irgsp1_rep	five_prime_UTR	28035503	28035543	.	+	.	Parent=Os03t0699300-01
Chr03	irgsp1_rep	CDS	28035544	28035837	.	+	0	Parent=Os03t0699300-01
Chr03	irgsp1_rep	CDS	28037342	28038034	.	+	0	Parent=Os03t0699300-01
Chr03	irgsp1_rep	CDS	28038113	28038424	.	+	0	Parent=Os03t0699300-01
Chr03	irgsp1_rep	CDS	28038564	28038734	.	+	0	Parent=Os03t0699300-01
Chr03	irgsp1_rep	three_prime_UTR	28038735	28038964	.	+	.	Parent=Os03t0699300-01
Chr03	irgsp1_rep	mRNA	28039420	28042378	.	-	.	ID=Os03t0699400-01;Name=Os03t0699400-01;Locus_id=Os03g0699400;Note=Silencing group B protein.;Transcript_evidence=AK069110 (DDBJ%2C Best hit);ORF_evidence=NP_001105069.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: N-acetyltransferase activity (GO:0008080);InterPro=GCN5-related N-acetyltransferase (GNAT) domain (IPR000182),Acyl-CoA N-acyltransferase (IPR016181);NIAS_FLcDNA=J023009F11;Expression=AK069110;TENOR=Os03t0699400-01;KEGG=Os03t0699400-01
Chr03	irgsp1_rep	five_prime_UTR	28042211	28042378	.	-	.	Parent=Os03t0699400-01
Chr03	irgsp1_rep	CDS	28042133	28042210	.	-	0	Parent=Os03t0699400-01
Chr03	irgsp1_rep	CDS	28041964	28042054	.	-	0	Parent=Os03t0699400-01
Chr03	irgsp1_rep	CDS	28041203	28041335	.	-	2	Parent=Os03t0699400-01
Chr03	irgsp1_rep	CDS	28040118	28040187	.	-	1	Parent=Os03t0699400-01
Chr03	irgsp1_rep	CDS	28039799	28039859	.	-	0	Parent=Os03t0699400-01
Chr03	irgsp1_rep	CDS	28039612	28039703	.	-	2	Parent=Os03t0699400-01
Chr03	irgsp1_rep	three_prime_UTR	28039420	28039611	.	-	.	Parent=Os03t0699400-01
Chr03	irgsp1_rep	mRNA	28046117	28048027	.	+	.	ID=Os03t0699600-01;Name=Os03t0699600-01;Locus_id=Os03g0699600;Oryzabase Gene Symbol Synonym(s)=OsFbox168%2C Os_F0132;Oryzabase Gene Name Synonym(s)=F-box protein 168;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK070428 (DDBJ%2C Best hit);ORF_evidence=NP_001150809.1 (RefSeq);GO=Biological Process: cell wall macromolecule catabolic process (GO:0016998),Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Peptidoglycan-binding Lysin subgroup (IPR002482),Peptidoglycan-binding lysin domain (IPR018392),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023049O05;Oryzabase=16957;Expression=AK070428;TENOR=Os03t0699600-01;KEGG=Os03t0699600-01
Chr03	irgsp1_rep	five_prime_UTR	28046117	28046239	.	+	.	Parent=Os03t0699600-01
Chr03	irgsp1_rep	CDS	28046240	28046533	.	+	0	Parent=Os03t0699600-01
Chr03	irgsp1_rep	CDS	28047345	28047719	.	+	0	Parent=Os03t0699600-01
Chr03	irgsp1_rep	three_prime_UTR	28047720	28048027	.	+	.	Parent=Os03t0699600-01
Chr03	irgsp1_rep	mRNA	28049600	28053580	.	+	.	ID=Os03t0699700-01;Name=Os03t0699700-01;Locus_id=Os03g0699700;CGSNL Gene Symbol=R9-LOX1;CGSNL Gene Name=R9-LIPOXYGENASE 1;Oryzabase Gene Symbol Synonym(s)=Osr9-LOX1%2C OsLOX3%2C LOX3;Oryzabase Gene Name Synonym(s)=9-lipoxygenase 1%2C lipoxygenase 3;Note=9-lipoxigenase.;Transcript_evidence=AK103565 (DDBJ%2C Best hit);ORF_evidence=A2XL11 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: protein binding (GO:0005515),Molecular Function: lipoxygenase activity (GO:0016165),Molecular Function: oxidoreductase activity%2C acting on single donors with incorporation of molecular oxygen%2C incorporation of two atoms of oxygen (GO:0016702),Molecular Function: metal ion binding (GO:0046872);InterPro=Lipoxygenase (IPR000907),Lipoxygenase%2C LH2 (IPR001024),Lipoxygenase%2C plant (IPR001246),Lipase/lipooxygenase%2C PLAT/LH2 (IPR008976),Lipoxygenase%2C C-terminal (IPR013819),Lipoxygenase%2C iron binding site (IPR020833),Lipoxygenase%2C conserved site (IPR020834);NIAS_FLcDNA=J033132L12;Oryzabase=8772;Expression=AK103565;TENOR=Os03t0699700-01;KEGG=Os03t0699700-01 (EC:1.13.11.12)
Chr03	irgsp1_rep	five_prime_UTR	28049600	28049672	.	+	.	Parent=Os03t0699700-01
Chr03	irgsp1_rep	CDS	28049673	28049859	.	+	0	Parent=Os03t0699700-01
Chr03	irgsp1_rep	CDS	28050038	28050330	.	+	2	Parent=Os03t0699700-01
Chr03	irgsp1_rep	CDS	28050772	28051009	.	+	0	Parent=Os03t0699700-01
Chr03	irgsp1_rep	CDS	28051111	28051446	.	+	2	Parent=Os03t0699700-01
Chr03	irgsp1_rep	CDS	28051532	28051617	.	+	2	Parent=Os03t0699700-01
Chr03	irgsp1_rep	CDS	28051714	28051821	.	+	0	Parent=Os03t0699700-01
Chr03	irgsp1_rep	CDS	28051914	28052221	.	+	0	Parent=Os03t0699700-01
Chr03	irgsp1_rep	CDS	28052301	28052564	.	+	1	Parent=Os03t0699700-01
Chr03	irgsp1_rep	CDS	28052646	28053417	.	+	1	Parent=Os03t0699700-01
Chr03	irgsp1_rep	three_prime_UTR	28053418	28053580	.	+	.	Parent=Os03t0699700-01
Chr03	irgsp1_rep	mRNA	28052636	28053417	.	-	.	ID=Os03t0699750-00;Name=Os03t0699750-00;Locus_id=Os03g0699750;Note=Non-protein coding transcript.;Transcript_evidence=EU945269 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0699750-00
Chr03	irgsp1_rep	exon	28052636	28053417	.	-	.	Parent=Os03t0699750-00
Chr03	irgsp1_rep	mRNA	28054566	28055167	.	-	.	ID=Os03t0699800-01;Name=Os03t0699800-01;Locus_id=Os03g0699800;CGSNL Gene Symbol=THI36;CGSNL Gene Name=THIONIN 36;Oryzabase Gene Symbol Synonym(s)=OsTHI36%2C OsTHION36%2C THION36;Oryzabase Gene Name Synonym(s)=Thionin 36;Note=Conserved hypothetical protein.;Transcript_evidence=AK107697 (DDBJ%2C Best hit);ORF_evidence=A2XL12 (UniProt);NIAS_FLcDNA=002-132-C07;Oryzabase=19274;Expression=AK107697;TENOR=Os03t0699800-01;KEGG=Os03t0699800-01
Chr03	irgsp1_rep	five_prime_UTR	28055149	28055167	.	-	.	Parent=Os03t0699800-01
Chr03	irgsp1_rep	CDS	28054834	28055148	.	-	0	Parent=Os03t0699800-01
Chr03	irgsp1_rep	three_prime_UTR	28054566	28054833	.	-	.	Parent=Os03t0699800-01
Chr03	irgsp1_rep	mRNA	28058425	28058695	.	-	.	ID=Os03t0699950-00;Name=Os03t0699950-00;Locus_id=Os03g0699950;CGSNL Gene Symbol=THI37;CGSNL Gene Name=THIONIN 37;Oryzabase Gene Symbol Synonym(s)=OsSTA110%2C OsTHION37%2C THION37%2C OsTHI37;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7G788 (UniProt);Oryzabase=19401;TENOR=Os03t0699950-00
Chr03	irgsp1_rep	CDS	28058666	28058695	.	-	0	Parent=Os03t0699950-00
Chr03	irgsp1_rep	CDS	28058425	28058640	.	-	0	Parent=Os03t0699950-00
Chr03	irgsp1_rep	mRNA	28063603	28064495	.	-	.	ID=Os03t0700100-01;Name=Os03t0700100-01;Locus_id=Os03g0700100;CGSNL Gene Symbol=THI38;CGSNL Gene Name=THIONIN 38;Oryzabase Gene Symbol Synonym(s)=OsTHI38%2C OsTHION38%2C THION38;Oryzabase Gene Name Synonym(s)=Thionin 38;Note=Somatomedin B domain containing protein.;Transcript_evidence=AK240873 (DDBJ%2C Best hit);ORF_evidence=NP_001173600.1 (RefSeq);NIAS_FLcDNA=J065025K08;Oryzabase=19275;TENOR=Os03t0700100-01;KEGG=Os03t0700100-01
Chr03	irgsp1_rep	five_prime_UTR	28064318	28064495	.	-	.	Parent=Os03t0700100-01
Chr03	irgsp1_rep	CDS	28064024	28064317	.	-	0	Parent=Os03t0700100-01
Chr03	irgsp1_rep	three_prime_UTR	28063603	28064023	.	-	.	Parent=Os03t0700100-01
Chr03	irgsp1_rep	mRNA	28068975	28069515	.	-	.	ID=Os03t0700200-01;Name=Os03t0700200-01;Locus_id=Os03g0700200;CGSNL Gene Symbol=THI39;CGSNL Gene Name=THIONIN 39;Oryzabase Gene Symbol Synonym(s)=OsTHI39%2C OsTHION39%2C THION39;Oryzabase Gene Name Synonym(s)=Thionin 39;Note=Conserved hypothetical protein.;Transcript_evidence=AK119711 (DDBJ%2C Best hit);ORF_evidence=A2XL16 (UniProt);NIAS_FLcDNA=002-157-E12;Oryzabase=19276;Expression=AK119711;TENOR=Os03t0700200-01;KEGG=Os03t0700200-01
Chr03	irgsp1_rep	five_prime_UTR	28069430	28069515	.	-	.	Parent=Os03t0700200-01
Chr03	irgsp1_rep	CDS	28069136	28069429	.	-	0	Parent=Os03t0700200-01
Chr03	irgsp1_rep	three_prime_UTR	28068975	28069135	.	-	.	Parent=Os03t0700200-01
Chr03	irgsp1_rep	mRNA	28090066	28094467	.	+	.	ID=Os03t0700400-01;Name=Os03t0700400-01;Locus_id=Os03g0700400;RAP-DB Gene Symbol Synonym(s)=LOX-3;RAP-DB Gene Name Synonym(s)=lipoxygenase-3;CGSNL Gene Symbol=LOX3;CGSNL Gene Name=LIPOXYGENASE 3;Oryzabase Gene Symbol Synonym(s)=Lox3*%2C lox3(t)%2C LOX-3%2C Lox3%2C OsLOX4%2C LOX4;Oryzabase Gene Name Synonym(s)=Lipoxygenase3%2C Lipoxygenase 3%2C Lipoxygenase-3%2C Putative lipoxygenase 3%2C Lipoxygenase 4;Note=Lipoxygenase-3%2C Generation of stale flavor;Transcript_evidence=Inferred from literature;ORF_evidence=Q7G794;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: protein binding (GO:0005515),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on single donors with incorporation of molecular oxygen%2C incorporation of two atoms of oxygen (GO:0016702),Molecular Function: metal ion binding (GO:0046872);InterPro=PLAT/LH2 domain superfamily (IPR036392),Lipoxigenase%2C C-terminal domain superfamily (IPR036226),Lipoxygenase%2C domain 3 (IPR027433),Lipoxygenase%2C plant (IPR001246),PLAT/LH2 domain (IPR001024),Lipoxygenase%2C C-terminal (IPR013819),Lipoxygenase%2C iron binding site (IPR020833),Lipoxygenase%2C conserved site (IPR020834);Manual Curation=May 16%2C 2018;Literature_PMID=DOI:10.1270/jsbbs.58.169;Oryzabase=182;TENOR=Os03t0700400-00;KEGG=Os03t0700400-00 (EC:1.13.11.58)
Chr03	irgsp1_rep	CDS	28090066	28090255	.	+	0	Parent=Os03t0700400-01
Chr03	irgsp1_rep	CDS	28090654	28090952	.	+	2	Parent=Os03t0700400-01
Chr03	irgsp1_rep	CDS	28091639	28091876	.	+	0	Parent=Os03t0700400-01
Chr03	irgsp1_rep	CDS	28092134	28092469	.	+	2	Parent=Os03t0700400-01
Chr03	irgsp1_rep	CDS	28092558	28092643	.	+	2	Parent=Os03t0700400-01
Chr03	irgsp1_rep	CDS	28092739	28092846	.	+	0	Parent=Os03t0700400-01
Chr03	irgsp1_rep	CDS	28092954	28093261	.	+	0	Parent=Os03t0700400-01
Chr03	irgsp1_rep	CDS	28093340	28093603	.	+	1	Parent=Os03t0700400-01
Chr03	irgsp1_rep	CDS	28093696	28094467	.	+	1	Parent=Os03t0700400-01
Chr03	irgsp1_rep	mRNA	28093691	28094467	.	-	.	ID=Os03t0700450-00;Name=Os03t0700450-00;Locus_id=Os03g0700450;Note=Hypothetical gene.;Transcript_evidence=EU945269 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0700450-00;KEGG=Os03t0700450-00
Chr03	irgsp1_rep	CDS	28093691	28094467	.	-	0	Parent=Os03t0700450-00
Chr03	irgsp1_rep	mRNA	28094842	28098533	.	-	.	ID=Os03t0700500-00;Name=Os03t0700500-00;Locus_id=Os03g0700500;Note=Conserved hypothetical protein.;Transcript_evidence=AK364499 (DDBJ);ORF_evidence=Q7G795 (UniProt);TENOR=Os03t0700500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	28098137	28098533	.	-	.	Parent=Os03t0700500-00
Chr03	irgsp1_rep	CDS	28097900	28098136	.	-	0	Parent=Os03t0700500-00
Chr03	irgsp1_rep	three_prime_UTR	28097881	28097899	.	-	.	Parent=Os03t0700500-00
Chr03	irgsp1_rep	three_prime_UTR	28097027	28097653	.	-	.	Parent=Os03t0700500-00
Chr03	irgsp1_rep	three_prime_UTR	28096544	28096927	.	-	.	Parent=Os03t0700500-00
Chr03	irgsp1_rep	three_prime_UTR	28096200	28096452	.	-	.	Parent=Os03t0700500-00
Chr03	irgsp1_rep	three_prime_UTR	28094842	28094951	.	-	.	Parent=Os03t0700500-00
Chr03	irgsp1_rep	mRNA	28097842	28098723	.	+	.	ID=Os03t0700600-01;Name=Os03t0700600-01;Locus_id=Os03g0700600;Note=Hypothetical protein.;Transcript_evidence=AK107009 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-120-F01;TENOR=Os03t0700600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	28097842	28098390	.	+	.	Parent=Os03t0700600-01
Chr03	irgsp1_rep	CDS	28098391	28098723	.	+	0	Parent=Os03t0700600-01
Chr03	irgsp1_rep	mRNA	28106903	28113286	.	+	.	ID=Os03t0700700-01;Name=Os03t0700700-01;Locus_id=Os03g0700700;CGSNL Gene Symbol=LOX1;CGSNL Gene Name=LIPOXYGENASE 1;Oryzabase Gene Symbol Synonym(s)=OsLOX1%2C OsLOX5;Oryzabase Gene Name Synonym(s)=lipoxygenase 1%2C Probable lipoxygenase 4%2C lipoxygenase 5;Note=Similar to Lipoxygenase (Fragment).;Transcript_evidence=AK072689 (DDBJ%2C Best hit);ORF_evidence=Q10EH0 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: protein binding (GO:0005515),Molecular Function: lipoxygenase activity (GO:0016165),Molecular Function: oxidoreductase activity%2C acting on single donors with incorporation of molecular oxygen%2C incorporation of two atoms of oxygen (GO:0016702),Molecular Function: metal ion binding (GO:0046872);InterPro=Lipoxygenase (IPR000907),Lipoxygenase%2C LH2 (IPR001024),Lipoxygenase%2C plant (IPR001246),Lipase/lipooxygenase%2C PLAT/LH2 (IPR008976),Lipoxygenase%2C C-terminal (IPR013819),Lipoxygenase%2C iron binding site (IPR020833),Lipoxygenase%2C conserved site (IPR020834);NIAS_FLcDNA=J023143H13;Oryzabase=8319;Expression=AK072689;TENOR=Os03t0700700-01;KEGG=Os03t0700700-01 (EC:1.13.11.12)
Chr03	irgsp1_rep	five_prime_UTR	28106903	28107193	.	+	.	Parent=Os03t0700700-01
Chr03	irgsp1_rep	CDS	28107194	28107404	.	+	0	Parent=Os03t0700700-01
Chr03	irgsp1_rep	CDS	28108017	28108306	.	+	2	Parent=Os03t0700700-01
Chr03	irgsp1_rep	CDS	28110286	28110529	.	+	0	Parent=Os03t0700700-01
Chr03	irgsp1_rep	CDS	28110625	28110963	.	+	2	Parent=Os03t0700700-01
Chr03	irgsp1_rep	CDS	28111072	28111157	.	+	2	Parent=Os03t0700700-01
Chr03	irgsp1_rep	CDS	28111254	28111361	.	+	0	Parent=Os03t0700700-01
Chr03	irgsp1_rep	CDS	28111507	28111814	.	+	0	Parent=Os03t0700700-01
Chr03	irgsp1_rep	CDS	28111900	28112163	.	+	1	Parent=Os03t0700700-01
Chr03	irgsp1_rep	CDS	28112263	28113046	.	+	1	Parent=Os03t0700700-01
Chr03	irgsp1_rep	three_prime_UTR	28113047	28113286	.	+	.	Parent=Os03t0700700-01
Chr03	irgsp1_rep	mRNA	28107175	28113300	.	+	.	ID=Os03t0700700-02;Name=Os03t0700700-02;Locus_id=Os03g0700700;CGSNL Gene Symbol=LOX1;CGSNL Gene Name=LIPOXYGENASE 1;Oryzabase Gene Symbol Synonym(s)=OsLOX1%2C OsLOX5;Oryzabase Gene Name Synonym(s)=lipoxygenase 1%2C Probable lipoxygenase 4%2C lipoxygenase 5;Note=Similar to Lipoxygenase.;Transcript_evidence=AK072869 (DDBJ%2C Best hit);ORF_evidence=Q10EH0 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: protein binding (GO:0005515),Molecular Function: lipoxygenase activity (GO:0016165),Molecular Function: oxidoreductase activity%2C acting on single donors with incorporation of molecular oxygen%2C incorporation of two atoms of oxygen (GO:0016702),Molecular Function: metal ion binding (GO:0046872);InterPro=Lipoxygenase (IPR000907),Lipoxygenase%2C LH2 (IPR001024),Lipoxygenase%2C plant (IPR001246),Lipase/lipooxygenase%2C PLAT/LH2 (IPR008976),Lipoxygenase%2C C-terminal (IPR013819),Lipoxygenase%2C iron binding site (IPR020833),Lipoxygenase%2C conserved site (IPR020834);NIAS_FLcDNA=J023143O17;Oryzabase=8319;TENOR=Os03t0700700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	28107175	28107216	.	+	.	Parent=Os03t0700700-02
Chr03	irgsp1_rep	CDS	28107217	28107267	.	+	0	Parent=Os03t0700700-02
Chr03	irgsp1_rep	CDS	28107329	28107404	.	+	0	Parent=Os03t0700700-02
Chr03	irgsp1_rep	CDS	28108017	28108306	.	+	2	Parent=Os03t0700700-02
Chr03	irgsp1_rep	CDS	28110286	28110529	.	+	0	Parent=Os03t0700700-02
Chr03	irgsp1_rep	CDS	28110625	28110963	.	+	2	Parent=Os03t0700700-02
Chr03	irgsp1_rep	CDS	28111072	28111157	.	+	2	Parent=Os03t0700700-02
Chr03	irgsp1_rep	CDS	28111254	28111361	.	+	0	Parent=Os03t0700700-02
Chr03	irgsp1_rep	CDS	28111507	28111814	.	+	0	Parent=Os03t0700700-02
Chr03	irgsp1_rep	CDS	28111900	28112163	.	+	1	Parent=Os03t0700700-02
Chr03	irgsp1_rep	CDS	28112263	28113046	.	+	1	Parent=Os03t0700700-02
Chr03	irgsp1_rep	three_prime_UTR	28113047	28113300	.	+	.	Parent=Os03t0700700-02
Chr03	irgsp1_rep	mRNA	28111221	28113272	.	+	.	ID=Os03t0700700-03;Name=Os03t0700700-03;Locus_id=Os03g0700700;CGSNL Gene Symbol=LOX1;CGSNL Gene Name=LIPOXYGENASE 1;Oryzabase Gene Symbol Synonym(s)=OsLOX1%2C OsLOX5;Oryzabase Gene Name Synonym(s)=lipoxygenase 1%2C Probable lipoxygenase 4%2C lipoxygenase 5;Note=Similar to Lipoxygenase.;Transcript_evidence=AK071121 (DDBJ%2C Best hit);ORF_evidence=Q10EH0 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: lipoxygenase activity (GO:0016165),Molecular Function: oxidoreductase activity%2C acting on single donors with incorporation of molecular oxygen%2C incorporation of two atoms of oxygen (GO:0016702),Molecular Function: metal ion binding (GO:0046872);InterPro=Lipoxygenase (IPR000907),Lipoxygenase%2C plant (IPR001246),Lipoxygenase%2C C-terminal (IPR013819),Lipoxygenase%2C iron binding site (IPR020833),Lipoxygenase%2C conserved site (IPR020834);NIAS_FLcDNA=J023079P11;Oryzabase=8319;Expression=AK071121;TENOR=Os03t0700700-03;KEGG=Os03t0700700-03 (EC:1.13.11.12)
Chr03	irgsp1_rep	five_prime_UTR	28111221	28111253	.	+	.	Parent=Os03t0700700-03
Chr03	irgsp1_rep	CDS	28111254	28111361	.	+	0	Parent=Os03t0700700-03
Chr03	irgsp1_rep	CDS	28111507	28111814	.	+	0	Parent=Os03t0700700-03
Chr03	irgsp1_rep	CDS	28111900	28112163	.	+	1	Parent=Os03t0700700-03
Chr03	irgsp1_rep	CDS	28112263	28113046	.	+	1	Parent=Os03t0700700-03
Chr03	irgsp1_rep	three_prime_UTR	28113047	28113272	.	+	.	Parent=Os03t0700700-03
Chr03	irgsp1_rep	mRNA	28111531	28113274	.	+	.	ID=Os03t0700700-04;Name=Os03t0700700-04;Locus_id=Os03g0700700;CGSNL Gene Symbol=LOX1;CGSNL Gene Name=LIPOXYGENASE 1;Oryzabase Gene Symbol Synonym(s)=OsLOX1%2C OsLOX5;Oryzabase Gene Name Synonym(s)=lipoxygenase 1%2C Probable lipoxygenase 4%2C lipoxygenase 5;Note=Similar to Lipoxygenase.;Transcript_evidence=AK105792 (DDBJ%2C Best hit);ORF_evidence=Q10EH0 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: lipoxygenase activity (GO:0016165),Molecular Function: oxidoreductase activity%2C acting on single donors with incorporation of molecular oxygen%2C incorporation of two atoms of oxygen (GO:0016702),Molecular Function: metal ion binding (GO:0046872);InterPro=Lipoxygenase (IPR000907),Lipoxygenase%2C plant (IPR001246),Lipoxygenase%2C C-terminal (IPR013819),Lipoxygenase%2C iron binding site (IPR020833),Lipoxygenase%2C conserved site (IPR020834);NIAS_FLcDNA=001-202-H08;Oryzabase=8319;Expression=AK105792;TENOR=Os03t0700700-04;KEGG=Os03t0700700-04 (EC:1.13.11.12)
Chr03	irgsp1_rep	CDS	28111531	28111814	.	+	0	Parent=Os03t0700700-04
Chr03	irgsp1_rep	CDS	28111900	28112163	.	+	1	Parent=Os03t0700700-04
Chr03	irgsp1_rep	CDS	28112263	28113046	.	+	1	Parent=Os03t0700700-04
Chr03	irgsp1_rep	three_prime_UTR	28113047	28113274	.	+	.	Parent=Os03t0700700-04
Chr03	irgsp1_rep	mRNA	28112258	28113049	.	-	.	ID=Os03t0700750-00;Name=Os03t0700750-00;Locus_id=Os03g0700750;Note=Hypothetical gene.;Transcript_evidence=EU945269 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0700750-00;KEGG=Os03t0700750-00
Chr03	irgsp1_rep	five_prime_UTR	28112761	28113049	.	-	.	Parent=Os03t0700750-00
Chr03	irgsp1_rep	CDS	28112395	28112760	.	-	0	Parent=Os03t0700750-00
Chr03	irgsp1_rep	three_prime_UTR	28112258	28112394	.	-	.	Parent=Os03t0700750-00
Chr03	irgsp1_rep	mRNA	28116620	28124217	.	+	.	ID=Os03t0700800-01;Name=Os03t0700800-01;Locus_id=Os03g0700800;Oryzabase Gene Symbol Synonym(s)=OsEIN2.2%2C EIN2.2;Oryzabase Gene Name Synonym(s)=Ethylene-insensitive protein 2.2;Note=Similar to EIN2.;Transcript_evidence=AK121781 (DDBJ%2C Best hit);ORF_evidence=Q6TJY0 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Natural resistance-associated macrophage protein (IPR001046),Ethylene-insensitive 2 (IPR017187);NIAS_FLcDNA=J033093P17;Oryzabase=22546;Expression=AK121781;TENOR=Os03t0700800-01;KEGG=Os03t0700800-01
Chr03	irgsp1_rep	five_prime_UTR	28116620	28117551	.	+	.	Parent=Os03t0700800-01
Chr03	irgsp1_rep	CDS	28117552	28117803	.	+	0	Parent=Os03t0700800-01
Chr03	irgsp1_rep	CDS	28118060	28118146	.	+	0	Parent=Os03t0700800-01
Chr03	irgsp1_rep	CDS	28118317	28118430	.	+	0	Parent=Os03t0700800-01
Chr03	irgsp1_rep	CDS	28118516	28118725	.	+	0	Parent=Os03t0700800-01
Chr03	irgsp1_rep	CDS	28119692	28119871	.	+	0	Parent=Os03t0700800-01
Chr03	irgsp1_rep	CDS	28119961	28122744	.	+	0	Parent=Os03t0700800-01
Chr03	irgsp1_rep	CDS	28123623	28123895	.	+	0	Parent=Os03t0700800-01
Chr03	irgsp1_rep	three_prime_UTR	28123896	28124217	.	+	.	Parent=Os03t0700800-01
Chr03	irgsp1_rep	mRNA	28116620	28121723	.	+	.	ID=Os03t0700800-02;Name=Os03t0700800-02;Locus_id=Os03g0700800;Oryzabase Gene Symbol Synonym(s)=OsEIN2.2%2C EIN2.2;Oryzabase Gene Name Synonym(s)=Ethylene-insensitive protein 2.2;Note=Hypothetical conserved gene.;Transcript_evidence=AK111607 (DDBJ%2C Best hit);ORF_evidence=Q53RB3 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Natural resistance-associated macrophage protein (IPR001046),Ethylene-insensitive 2 (IPR017187);NIAS_FLcDNA=J013105K15;Oryzabase=22546;Expression=AK111607;TENOR=Os03t0700800-02;KEGG=Os03t0700800-02
Chr03	irgsp1_rep	five_prime_UTR	28116620	28117551	.	+	.	Parent=Os03t0700800-02
Chr03	irgsp1_rep	CDS	28117552	28117803	.	+	0	Parent=Os03t0700800-02
Chr03	irgsp1_rep	CDS	28118060	28118146	.	+	0	Parent=Os03t0700800-02
Chr03	irgsp1_rep	CDS	28118317	28118430	.	+	0	Parent=Os03t0700800-02
Chr03	irgsp1_rep	CDS	28118516	28118725	.	+	0	Parent=Os03t0700800-02
Chr03	irgsp1_rep	CDS	28119692	28119937	.	+	0	Parent=Os03t0700800-02
Chr03	irgsp1_rep	three_prime_UTR	28119938	28121723	.	+	.	Parent=Os03t0700800-02
Chr03	irgsp1_rep	mRNA	28122161	28124206	.	+	.	ID=Os03t0700800-03;Name=Os03t0700800-03;Locus_id=Os03g0700800;Oryzabase Gene Symbol Synonym(s)=OsEIN2.2%2C EIN2.2;Oryzabase Gene Name Synonym(s)=Ethylene-insensitive protein 2.2;Note=Similar to Ethylene insensitive 2.;Transcript_evidence=AK105770 (DDBJ%2C Best hit);ORF_evidence=Q6JN48 (UniProt);NIAS_FLcDNA=001-202-E08;Oryzabase=22546;Expression=AK105770;TENOR=Os03t0700800-03;KEGG=Os03t0700800-03
Chr03	irgsp1_rep	five_prime_UTR	28122161	28122162	.	+	.	Parent=Os03t0700800-03
Chr03	irgsp1_rep	CDS	28122163	28122276	.	+	0	Parent=Os03t0700800-03
Chr03	irgsp1_rep	CDS	28122382	28122744	.	+	0	Parent=Os03t0700800-03
Chr03	irgsp1_rep	CDS	28123623	28123895	.	+	0	Parent=Os03t0700800-03
Chr03	irgsp1_rep	three_prime_UTR	28123896	28124206	.	+	.	Parent=Os03t0700800-03
Chr03	irgsp1_rep	mRNA	28128716	28137109	.	+	.	ID=Os03t0701000-01;Name=Os03t0701000-01;Locus_id=Os03g0701000;Note=Similar to HEAT repeat family protein%2C expressed.;Transcript_evidence=AK068293 (DDBJ%2C Best hit),AK100005 (DDBJ%2C Best hit);ORF_evidence=Q10EF8 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=HEAT (IPR000357),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),HEAT%2C type 2 (IPR021133);NIAS_FLcDNA=J013151J12,J013135O16;TENOR=Os03t0701000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	28128716	28128847	.	+	.	Parent=Os03t0701000-01
Chr03	irgsp1_rep	CDS	28128848	28130269	.	+	0	Parent=Os03t0701000-01
Chr03	irgsp1_rep	CDS	28131038	28131067	.	+	0	Parent=Os03t0701000-01
Chr03	irgsp1_rep	three_prime_UTR	28131068	28131147	.	+	.	Parent=Os03t0701000-01
Chr03	irgsp1_rep	three_prime_UTR	28131233	28131298	.	+	.	Parent=Os03t0701000-01
Chr03	irgsp1_rep	three_prime_UTR	28131373	28131537	.	+	.	Parent=Os03t0701000-01
Chr03	irgsp1_rep	three_prime_UTR	28131707	28131781	.	+	.	Parent=Os03t0701000-01
Chr03	irgsp1_rep	three_prime_UTR	28131865	28132019	.	+	.	Parent=Os03t0701000-01
Chr03	irgsp1_rep	three_prime_UTR	28132270	28132405	.	+	.	Parent=Os03t0701000-01
Chr03	irgsp1_rep	three_prime_UTR	28132490	28132559	.	+	.	Parent=Os03t0701000-01
Chr03	irgsp1_rep	three_prime_UTR	28132638	28132765	.	+	.	Parent=Os03t0701000-01
Chr03	irgsp1_rep	three_prime_UTR	28132874	28132930	.	+	.	Parent=Os03t0701000-01
Chr03	irgsp1_rep	three_prime_UTR	28133362	28133547	.	+	.	Parent=Os03t0701000-01
Chr03	irgsp1_rep	three_prime_UTR	28134067	28134159	.	+	.	Parent=Os03t0701000-01
Chr03	irgsp1_rep	three_prime_UTR	28134524	28134609	.	+	.	Parent=Os03t0701000-01
Chr03	irgsp1_rep	three_prime_UTR	28134704	28134770	.	+	.	Parent=Os03t0701000-01
Chr03	irgsp1_rep	three_prime_UTR	28134909	28134975	.	+	.	Parent=Os03t0701000-01
Chr03	irgsp1_rep	three_prime_UTR	28135052	28135188	.	+	.	Parent=Os03t0701000-01
Chr03	irgsp1_rep	three_prime_UTR	28135654	28135745	.	+	.	Parent=Os03t0701000-01
Chr03	irgsp1_rep	three_prime_UTR	28135885	28135951	.	+	.	Parent=Os03t0701000-01
Chr03	irgsp1_rep	three_prime_UTR	28136626	28137109	.	+	.	Parent=Os03t0701000-01
Chr03	irgsp1_rep	mRNA	28133081	28137109	.	+	.	ID=Os03t0701000-02;Name=Os03t0701000-02;Locus_id=Os03g0701000;Note=Similar to cDNA clone:J013135O16%2C full insert sequence.;Transcript_evidence=AK060273 (DDBJ%2C Best hit);ORF_evidence=Q10EF8 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=HEAT (IPR000357),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=001-005-G06;Expression=AK060273;TENOR=Os03t0701000-02;KEGG=Os03t0701000-02
Chr03	irgsp1_rep	five_prime_UTR	28133081	28133361	.	+	.	Parent=Os03t0701000-02
Chr03	irgsp1_rep	CDS	28133362	28133547	.	+	0	Parent=Os03t0701000-02
Chr03	irgsp1_rep	CDS	28134067	28134159	.	+	0	Parent=Os03t0701000-02
Chr03	irgsp1_rep	CDS	28134524	28134609	.	+	0	Parent=Os03t0701000-02
Chr03	irgsp1_rep	CDS	28134704	28134770	.	+	1	Parent=Os03t0701000-02
Chr03	irgsp1_rep	CDS	28134909	28134975	.	+	0	Parent=Os03t0701000-02
Chr03	irgsp1_rep	CDS	28135052	28135188	.	+	2	Parent=Os03t0701000-02
Chr03	irgsp1_rep	CDS	28135654	28135745	.	+	0	Parent=Os03t0701000-02
Chr03	irgsp1_rep	CDS	28135885	28135951	.	+	1	Parent=Os03t0701000-02
Chr03	irgsp1_rep	CDS	28136626	28136790	.	+	0	Parent=Os03t0701000-02
Chr03	irgsp1_rep	three_prime_UTR	28136791	28137109	.	+	.	Parent=Os03t0701000-02
Chr03	irgsp1_rep	mRNA	28138905	28141758	.	-	.	ID=Os03t0701100-01;Name=Os03t0701100-01;Locus_id=Os03g0701100;Note=Similar to Prp18 domain containing protein%2C expressed.;Transcript_evidence=AK120078 (DDBJ%2C Best hit);ORF_evidence=Q53RB6 (UniProt);GO=Biological Process: RNA splicing (GO:0008380),Cellular Component: spliceosomal complex (GO:0005681);InterPro=Splicing factor motif (IPR003648),Prp18 (IPR004098),Pre-mRNA processing factor 4 (PRP4)-like (IPR014906);NIAS_FLcDNA=J013011B03;TENOR=Os03t0701100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	28141757	28141758	.	-	.	Parent=Os03t0701100-01
Chr03	irgsp1_rep	CDS	28140800	28141756	.	-	0	Parent=Os03t0701100-01
Chr03	irgsp1_rep	three_prime_UTR	28138905	28140799	.	-	.	Parent=Os03t0701100-01
Chr03	irgsp1_rep	mRNA	28140189	28141692	.	-	.	ID=Os03t0701100-02;Name=Os03t0701100-02;Locus_id=Os03g0701100;Note=Similar to Prp18 domain containing protein%2C expressed.;Transcript_evidence=AK109455 (DDBJ%2C Best hit),AK110740 (DDBJ%2C Best hit);ORF_evidence=Q53RB6 (UniProt);GO=Biological Process: RNA splicing (GO:0008380),Cellular Component: spliceosomal complex (GO:0005681);InterPro=Splicing factor motif (IPR003648),Prp18 (IPR004098),Pre-mRNA processing factor 4 (PRP4)-like (IPR014906);NIAS_FLcDNA=001-118-H10,002-170-F07;Expression=AK109455;TENOR=Os03t0701100-02;KEGG=Os03t0701100-02
Chr03	irgsp1_rep	five_prime_UTR	28141691	28141692	.	-	.	Parent=Os03t0701100-02
Chr03	irgsp1_rep	CDS	28140800	28141690	.	-	0	Parent=Os03t0701100-02
Chr03	irgsp1_rep	three_prime_UTR	28140189	28140799	.	-	.	Parent=Os03t0701100-02
Chr03	irgsp1_rep	mRNA	28143097	28146251	.	+	.	ID=Os03t0701200-01;Name=Os03t0701200-01;Locus_id=Os03g0701200;Note=Similar to Sugar-starvation induced protein (Fragment).;Transcript_evidence=AK061982 (DDBJ%2C Best hit),AK061528 (DDBJ%2C Best hit),AK099563 (DDBJ%2C Best hit);ORF_evidence=B4FL38 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 (IPR006402),Pyrimidine 5-nucleotidase (IPR010237),HAD-like domain (IPR023214);NIAS_FLcDNA=001-043-A11,006-310-D11,J013034L20;TENOR=Os03t0701200-01
Chr03	irgsp1_rep	five_prime_UTR	28143097	28143183	.	+	.	Parent=Os03t0701200-01
Chr03	irgsp1_rep	CDS	28143184	28143232	.	+	0	Parent=Os03t0701200-01
Chr03	irgsp1_rep	CDS	28143351	28143514	.	+	2	Parent=Os03t0701200-01
Chr03	irgsp1_rep	CDS	28143646	28143683	.	+	0	Parent=Os03t0701200-01
Chr03	irgsp1_rep	CDS	28143822	28143909	.	+	1	Parent=Os03t0701200-01
Chr03	irgsp1_rep	CDS	28143999	28144223	.	+	0	Parent=Os03t0701200-01
Chr03	irgsp1_rep	CDS	28144746	28144811	.	+	0	Parent=Os03t0701200-01
Chr03	irgsp1_rep	CDS	28145825	28146025	.	+	0	Parent=Os03t0701200-01
Chr03	irgsp1_rep	three_prime_UTR	28146026	28146251	.	+	.	Parent=Os03t0701200-01
Chr03	irgsp1_rep	mRNA	28149077	28150967	.	+	.	ID=Os03t0701300-00;Name=Os03t0701300-00;Locus_id=Os03g0701300;Note=Similar to predicted protein.;Transcript_evidence=CT835291 (DDBJ%2C Best hit);ORF_evidence=A2XL27 (UniProt);TENOR=Os03t0701300-00;KEGG=Os03t0701300-00
Chr03	irgsp1_rep	CDS	28149077	28149150	.	+	0	Parent=Os03t0701300-00
Chr03	irgsp1_rep	CDS	28149632	28149773	.	+	1	Parent=Os03t0701300-00
Chr03	irgsp1_rep	CDS	28150721	28150804	.	+	0	Parent=Os03t0701300-00
Chr03	irgsp1_rep	three_prime_UTR	28150805	28150967	.	+	.	Parent=Os03t0701300-00
Chr03	irgsp1_rep	mRNA	28151940	28158885	.	+	.	ID=Os03t0701400-01;Name=Os03t0701400-01;Locus_id=Os03g0701400;Note=Similar to Pentatricopeptide repeat protein PPR868-14.;Transcript_evidence=AK066971 (DDBJ%2C Best hit);ORF_evidence=B6U1A3 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013089C22;TENOR=Os03t0701400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	28151940	28152006	.	+	.	Parent=Os03t0701400-01
Chr03	irgsp1_rep	CDS	28152007	28154370	.	+	0	Parent=Os03t0701400-01
Chr03	irgsp1_rep	three_prime_UTR	28154371	28155044	.	+	.	Parent=Os03t0701400-01
Chr03	irgsp1_rep	three_prime_UTR	28155205	28155324	.	+	.	Parent=Os03t0701400-01
Chr03	irgsp1_rep	three_prime_UTR	28157826	28158203	.	+	.	Parent=Os03t0701400-01
Chr03	irgsp1_rep	three_prime_UTR	28158363	28158885	.	+	.	Parent=Os03t0701400-01
Chr03	irgsp1_rep	mRNA	28154357	28161762	.	+	.	ID=Os03t0701400-02;Name=Os03t0701400-02;Locus_id=Os03g0701400;Note=Conserved hypothetical protein.;Transcript_evidence=AK120400 (DDBJ%2C Best hit);ORF_evidence=B9FAS5 (UniProt);NIAS_FLcDNA=J013088D23;TENOR=Os03t0701400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	28154357	28154765	.	+	.	Parent=Os03t0701400-02
Chr03	irgsp1_rep	CDS	28154766	28155044	.	+	0	Parent=Os03t0701400-02
Chr03	irgsp1_rep	CDS	28155205	28155324	.	+	0	Parent=Os03t0701400-02
Chr03	irgsp1_rep	CDS	28157826	28158032	.	+	0	Parent=Os03t0701400-02
Chr03	irgsp1_rep	three_prime_UTR	28158033	28158203	.	+	.	Parent=Os03t0701400-02
Chr03	irgsp1_rep	three_prime_UTR	28158356	28158572	.	+	.	Parent=Os03t0701400-02
Chr03	irgsp1_rep	three_prime_UTR	28160505	28161762	.	+	.	Parent=Os03t0701400-02
Chr03	irgsp1_rep	mRNA	28160303	28161346	.	-	.	ID=Os03t0701500-01;Name=Os03t0701500-01;Locus_id=Os03g0701500;Note=GNS1/SUR4 membrane protein family protein.;Transcript_evidence=AK063166 (DDBJ%2C Best hit);ORF_evidence=A2XL29 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=GNS1/SUR4 membrane protein (IPR002076);NIAS_FLcDNA=001-109-H06;Expression=AK063166;TENOR=Os03t0701500-01;KEGG=Os03t0701500-01 (EC:2.3.1.-)
Chr03	irgsp1_rep	five_prime_UTR	28161290	28161346	.	-	.	Parent=Os03t0701500-01
Chr03	irgsp1_rep	CDS	28160450	28161289	.	-	0	Parent=Os03t0701500-01
Chr03	irgsp1_rep	three_prime_UTR	28160303	28160449	.	-	.	Parent=Os03t0701500-01
Chr03	irgsp1_rep	mRNA	28163601	28163949	.	-	.	ID=Os03t0701550-01;Name=Os03t0701550-01;Locus_id=Os03g0701550;Note=Non-protein coding transcript.;Transcript_evidence=AK242529 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080315G10;TENOR=Os03t0701550-01
Chr03	irgsp1_rep	exon	28163601	28163949	.	-	.	Parent=Os03t0701550-01
Chr03	irgsp1_rep	mRNA	28164813	28167428	.	-	.	ID=Os03t0701600-01;Name=Os03t0701600-01;Locus_id=Os03g0701600;Note=Conserved hypothetical protein.;Transcript_evidence=AK071171 (DDBJ%2C Best hit);ORF_evidence=Q10ED5 (UniProt);NIAS_FLcDNA=J023082E03;Expression=AK071171;TENOR=Os03t0701600-01;KEGG=Os03t0701600-01
Chr03	irgsp1_rep	five_prime_UTR	28167243	28167428	.	-	.	Parent=Os03t0701600-01
Chr03	irgsp1_rep	CDS	28166991	28167242	.	-	0	Parent=Os03t0701600-01
Chr03	irgsp1_rep	CDS	28166454	28166568	.	-	0	Parent=Os03t0701600-01
Chr03	irgsp1_rep	CDS	28166122	28166312	.	-	2	Parent=Os03t0701600-01
Chr03	irgsp1_rep	CDS	28166015	28166042	.	-	0	Parent=Os03t0701600-01
Chr03	irgsp1_rep	CDS	28165408	28165516	.	-	2	Parent=Os03t0701600-01
Chr03	irgsp1_rep	CDS	28165046	28165127	.	-	1	Parent=Os03t0701600-01
Chr03	irgsp1_rep	three_prime_UTR	28164813	28165045	.	-	.	Parent=Os03t0701600-01
Chr03	irgsp1_rep	mRNA	28169867	28174078	.	-	.	ID=Os03t0701700-01;Name=Os03t0701700-01;Locus_id=Os03g0701700;CGSNL Gene Symbol=ERS1;CGSNL Gene Name=ETHYLENE RECEPTOR;Oryzabase Gene Symbol Synonym(s)=OS-ERS1%2C OsERS1%2C OsERS1a%2C OsERS1b%2C OSERS;Oryzabase Gene Name Synonym(s)=ethylene responsive factor%2C ethylene response sensor 1;Note=Similar to Ethylene receptor.;Transcript_evidence=AK067813 (DDBJ%2C Best hit);ORF_evidence=O24176 (UniProt);GO=Biological Process: signal transduction (GO:0007165),Biological Process: phosphorylation (GO:0016310),Biological Process: peptidyl-histidine phosphorylation (GO:0018106),Cellular Component: membrane (GO:0016020),Molecular Function: two-component sensor activity (GO:0000155),Molecular Function: protein histidine kinase activity (GO:0004673),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=GAF (IPR003018),ATPase-like%2C ATP-binding domain (IPR003594),Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain (IPR003661),Signal transduction histidine kinase-related protein%2C C-terminal (IPR004358),Signal transduction histidine kinase%2C core (IPR005467),Signal transduction histidine kinase%2C homodimeric (IPR009082);NIAS_FLcDNA=J013116O17;Oryzabase=9857;Expression=AK067813;TENOR=Os03t0701700-01;KEGG=Os03t0701700-01
Chr03	irgsp1_rep	five_prime_UTR	28173930	28174078	.	-	.	Parent=Os03t0701700-01
Chr03	irgsp1_rep	five_prime_UTR	28173315	28173353	.	-	.	Parent=Os03t0701700-01
Chr03	irgsp1_rep	CDS	28172409	28173314	.	-	0	Parent=Os03t0701700-01
Chr03	irgsp1_rep	CDS	28171669	28172037	.	-	0	Parent=Os03t0701700-01
Chr03	irgsp1_rep	CDS	28171308	28171574	.	-	0	Parent=Os03t0701700-01
Chr03	irgsp1_rep	CDS	28170453	28170580	.	-	0	Parent=Os03t0701700-01
Chr03	irgsp1_rep	CDS	28170074	28170314	.	-	1	Parent=Os03t0701700-01
Chr03	irgsp1_rep	three_prime_UTR	28169867	28170073	.	-	.	Parent=Os03t0701700-01
Chr03	irgsp1_rep	mRNA	28169837	28174052	.	-	.	ID=Os03t0701700-02;Name=Os03t0701700-02;Locus_id=Os03g0701700;CGSNL Gene Symbol=ERS1;CGSNL Gene Name=ETHYLENE RECEPTOR;Oryzabase Gene Symbol Synonym(s)=OS-ERS1%2C OsERS1%2C OsERS1a%2C OsERS1b%2C OSERS;Oryzabase Gene Name Synonym(s)=ethylene responsive factor%2C ethylene response sensor 1;Note=Similar to Ethylene receptor.;Transcript_evidence=AK065161 (DDBJ%2C Best hit);ORF_evidence=O24176 (UniProt);GO=Biological Process: signal transduction (GO:0007165),Biological Process: phosphorylation (GO:0016310),Biological Process: peptidyl-histidine phosphorylation (GO:0018106),Cellular Component: membrane (GO:0016020),Molecular Function: two-component sensor activity (GO:0000155),Molecular Function: protein histidine kinase activity (GO:0004673),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=GAF (IPR003018),ATPase-like%2C ATP-binding domain (IPR003594),Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain (IPR003661),Signal transduction histidine kinase-related protein%2C C-terminal (IPR004358),Signal transduction histidine kinase%2C core (IPR005467),Signal transduction histidine kinase%2C homodimeric (IPR009082);NIAS_FLcDNA=J013002C04;Oryzabase=9857;Expression=AK065161;TENOR=Os03t0701700-02;KEGG=Os03t0701700-02
Chr03	irgsp1_rep	five_prime_UTR	28173930	28174052	.	-	.	Parent=Os03t0701700-02
Chr03	irgsp1_rep	five_prime_UTR	28173315	28173353	.	-	.	Parent=Os03t0701700-02
Chr03	irgsp1_rep	CDS	28172409	28173314	.	-	0	Parent=Os03t0701700-02
Chr03	irgsp1_rep	CDS	28171669	28172037	.	-	0	Parent=Os03t0701700-02
Chr03	irgsp1_rep	CDS	28171308	28171574	.	-	0	Parent=Os03t0701700-02
Chr03	irgsp1_rep	CDS	28170453	28170580	.	-	0	Parent=Os03t0701700-02
Chr03	irgsp1_rep	CDS	28170074	28170314	.	-	1	Parent=Os03t0701700-02
Chr03	irgsp1_rep	three_prime_UTR	28169837	28170073	.	-	.	Parent=Os03t0701700-02
Chr03	irgsp1_rep	mRNA	28170074	28173314	.	+	.	ID=Os03t0701750-00;Name=Os03t0701750-00;Locus_id=Os03g0701750;Note=Hypothetical protein.;Transcript_evidence=tplb0049a13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0701750-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	28170074	28170305	.	+	.	Parent=Os03t0701750-00
Chr03	irgsp1_rep	five_prime_UTR	28170445	28170569	.	+	.	Parent=Os03t0701750-00
Chr03	irgsp1_rep	five_prime_UTR	28171299	28171410	.	+	.	Parent=Os03t0701750-00
Chr03	irgsp1_rep	CDS	28171411	28171576	.	+	0	Parent=Os03t0701750-00
Chr03	irgsp1_rep	CDS	28171667	28171746	.	+	2	Parent=Os03t0701750-00
Chr03	irgsp1_rep	three_prime_UTR	28171747	28172024	.	+	.	Parent=Os03t0701750-00
Chr03	irgsp1_rep	three_prime_UTR	28172396	28173314	.	+	.	Parent=Os03t0701750-00
Chr03	irgsp1_rep	mRNA	28180227	28185952	.	+	.	ID=Os03t0701800-01;Name=Os03t0701800-01;Locus_id=Os03g0701800;RAP-DB Gene Symbol Synonym(s)=OsPIPK1;RAP-DB Gene Name Synonym(s)=rice phosphatidylinositol monophosphate kinase 1%2C phosphatidylinositol 4-phosphate 5-kinase 1;CGSNL Gene Symbol=PIPK1;CGSNL Gene Name=PHOSPHATIDYLINOSITOL MONOPHOSPHATE KINASE 1;Oryzabase Gene Symbol Synonym(s)=OsPIPK1%2C PIP5K;Oryzabase Gene Name Synonym(s)=rice phosphatidylinositol monophosphate kinase1%2C Phosphatidylinositol-4-phosphate 5-kinase 1%2C 1-phosphatidylinositol-4-phosphate kinase%2C PtdIns(4)P-5-kinase%2C Diphosphoinositide kinase;Note=Phosphatidylinositol 4-phosphate 5-kinase%2C Regulation of heading%2C Regulation of floral induction genes;Transcript_evidence=AJ544688,AK065869 (truncated);ORF_evidence=Q6EX42-2;GO=Biological Process: phosphatidylinositol metabolic process (GO:0046488),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphatidylinositol phosphate kinase activity (GO:0016307),Molecular Function: 1-phosphatidylinositol-4-phosphate 5-kinase activity (GO:0016308);InterPro=Phosphatidylinositol-4-phosphate 5-kinase%2C N-terminal (IPR027484),Phosphatidylinositol-4-phosphate 5-kinase%2C C-terminal (IPR027483),Phosphatidylinositol-4-phosphate 5-kinase%2C plant (IPR017163),Phosphatidylinositol-4-phosphate 5-kinase%2C core (IPR002498),MORN motif (IPR003409);NIAS_FLcDNA=J013045E16 (truncated);Manual Curation=September 13%2C 2017;Literature_PMID=15159629;Oryzabase=6257;Expression=AK065869;TENOR=Os03t0701800-01;KEGG=Os03t0701800-01 (EC:2.7.1.68);B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	28180227	28180279	.	+	0	Parent=Os03t0701800-01
Chr03	irgsp1_rep	CDS	28180669	28180707	.	+	1	Parent=Os03t0701800-01
Chr03	irgsp1_rep	CDS	28181010	28182059	.	+	1	Parent=Os03t0701800-01
Chr03	irgsp1_rep	CDS	28182631	28182798	.	+	1	Parent=Os03t0701800-01
Chr03	irgsp1_rep	CDS	28183133	28183298	.	+	1	Parent=Os03t0701800-01
Chr03	irgsp1_rep	CDS	28183475	28183585	.	+	0	Parent=Os03t0701800-01
Chr03	irgsp1_rep	CDS	28183673	28183860	.	+	0	Parent=Os03t0701800-01
Chr03	irgsp1_rep	CDS	28184378	28184532	.	+	1	Parent=Os03t0701800-01
Chr03	irgsp1_rep	CDS	28184727	28184895	.	+	2	Parent=Os03t0701800-01
Chr03	irgsp1_rep	CDS	28185640	28185919	.	+	1	Parent=Os03t0701800-01
Chr03	irgsp1_rep	three_prime_UTR	28185920	28185952	.	+	.	Parent=Os03t0701800-01
Chr03	irgsp1_rep	mRNA	28183152	28185948	.	+	.	ID=Os03t0701800-02;Name=Os03t0701800-02;Locus_id=Os03g0701800;CGSNL Gene Symbol=PIPK1;CGSNL Gene Name=PHOSPHATIDYLINOSITOL MONOPHOSPHATE KINASE 1;Oryzabase Gene Symbol Synonym(s)=OsPIPK1%2C PIP5K;Oryzabase Gene Name Synonym(s)=rice phosphatidylinositol monophosphate kinase1%2C Phosphatidylinositol-4-phosphate 5-kinase 1%2C 1-phosphatidylinositol-4-phosphate kinase%2C PtdIns(4)P-5-kinase%2C Diphosphoinositide kinase;Note=Similar to Isoform 2 of Phosphatidylinositol-4-phosphate 5-kinase 1.;Transcript_evidence=AK099707 (DDBJ%2C Best hit);ORF_evidence=Q6EX42-2 (UniProt);GO=Biological Process: phosphatidylinositol metabolic process (GO:0046488),Molecular Function: phosphatidylinositol phosphate kinase activity (GO:0016307);InterPro=Phosphatidylinositol-4-phosphate 5-kinase%2C core (IPR002498),Phosphatidylinositol-4-phosphate 5-kinase%2C core%2C subgroup (IPR016034),Phosphatidylinositol-4-phosphate 5-kinase (IPR023610);NIAS_FLcDNA=J013075K17;Oryzabase=6257;Expression=AK099707;TENOR=Os03t0701800-02;KEGG=Os03t0701800-02 (EC:2.7.1.68)
Chr03	irgsp1_rep	five_prime_UTR	28183152	28183298	.	+	.	Parent=Os03t0701800-02
Chr03	irgsp1_rep	five_prime_UTR	28183448	28183462	.	+	.	Parent=Os03t0701800-02
Chr03	irgsp1_rep	CDS	28183463	28183585	.	+	0	Parent=Os03t0701800-02
Chr03	irgsp1_rep	CDS	28183673	28183939	.	+	0	Parent=Os03t0701800-02
Chr03	irgsp1_rep	three_prime_UTR	28183940	28184532	.	+	.	Parent=Os03t0701800-02
Chr03	irgsp1_rep	three_prime_UTR	28184727	28184895	.	+	.	Parent=Os03t0701800-02
Chr03	irgsp1_rep	three_prime_UTR	28185640	28185948	.	+	.	Parent=Os03t0701800-02
Chr03	irgsp1_rep	mRNA	28186203	28190115	.	-	.	ID=Os03t0701900-01;Name=Os03t0701900-01;Locus_id=Os03g0701900;Note=Similar to Pinin/SDK/memA/ protein conserved region containing protein.;Transcript_evidence=AK068404 (DDBJ%2C Best hit);ORF_evidence=B6TZE8 (UniProt);InterPro=Pinin/SDK/MemA protein (IPR006786);NIAS_FLcDNA=J013151C08;Expression=AK068404;TENOR=Os03t0701900-01;KEGG=Os03t0701900-01
Chr03	irgsp1_rep	five_prime_UTR	28190062	28190115	.	-	.	Parent=Os03t0701900-01
Chr03	irgsp1_rep	CDS	28189987	28190061	.	-	0	Parent=Os03t0701900-01
Chr03	irgsp1_rep	CDS	28189813	28189911	.	-	0	Parent=Os03t0701900-01
Chr03	irgsp1_rep	CDS	28189666	28189725	.	-	0	Parent=Os03t0701900-01
Chr03	irgsp1_rep	CDS	28189422	28189562	.	-	0	Parent=Os03t0701900-01
Chr03	irgsp1_rep	CDS	28189239	28189355	.	-	0	Parent=Os03t0701900-01
Chr03	irgsp1_rep	CDS	28188904	28188975	.	-	0	Parent=Os03t0701900-01
Chr03	irgsp1_rep	CDS	28188180	28188263	.	-	0	Parent=Os03t0701900-01
Chr03	irgsp1_rep	CDS	28187972	28188072	.	-	0	Parent=Os03t0701900-01
Chr03	irgsp1_rep	CDS	28187790	28187826	.	-	1	Parent=Os03t0701900-01
Chr03	irgsp1_rep	three_prime_UTR	28187577	28187789	.	-	.	Parent=Os03t0701900-01
Chr03	irgsp1_rep	three_prime_UTR	28186203	28186803	.	-	.	Parent=Os03t0701900-01
Chr03	irgsp1_rep	mRNA	28193801	28195637	.	-	.	ID=Os03t0702000-01;Name=Os03t0702000-01;Locus_id=Os03g0702000;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK119905 (DDBJ%2C Best hit);ORF_evidence=Q75I83 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=002-182-D10;Expression=AK119905;TENOR=Os03t0702000-01;KEGG=Os03t0702000-01 (EC:2.4.1.17)
Chr03	irgsp1_rep	five_prime_UTR	28195515	28195637	.	-	.	Parent=Os03t0702000-01
Chr03	irgsp1_rep	CDS	28195089	28195514	.	-	0	Parent=Os03t0702000-01
Chr03	irgsp1_rep	CDS	28194040	28195002	.	-	0	Parent=Os03t0702000-01
Chr03	irgsp1_rep	three_prime_UTR	28193801	28194039	.	-	.	Parent=Os03t0702000-01
Chr03	irgsp1_rep	mRNA	28193965	28195559	.	-	.	ID=Os03t0702000-02;Name=Os03t0702000-02;Locus_id=Os03g0702000;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK121682 (DDBJ%2C Best hit);ORF_evidence=Q75I83 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J033070B15;Expression=AK121682;TENOR=Os03t0702000-02;KEGG=Os03t0702000-02 (EC:2.4.1.17)
Chr03	irgsp1_rep	five_prime_UTR	28195515	28195559	.	-	.	Parent=Os03t0702000-02
Chr03	irgsp1_rep	CDS	28195089	28195514	.	-	0	Parent=Os03t0702000-02
Chr03	irgsp1_rep	CDS	28194040	28195002	.	-	0	Parent=Os03t0702000-02
Chr03	irgsp1_rep	three_prime_UTR	28193965	28194039	.	-	.	Parent=Os03t0702000-02
Chr03	irgsp1_rep	mRNA	28193825	28195533	.	-	.	ID=Os03t0702000-03;Name=Os03t0702000-03;Locus_id=Os03g0702000;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK105398 (DDBJ%2C Best hit);ORF_evidence=NP_001150595.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=001-123-C05;Expression=AK105398;TENOR=Os03t0702000-03;KEGG=Os03t0702000-03 (EC:2.4.1.17)
Chr03	irgsp1_rep	five_prime_UTR	28195515	28195533	.	-	.	Parent=Os03t0702000-03
Chr03	irgsp1_rep	CDS	28195089	28195514	.	-	0	Parent=Os03t0702000-03
Chr03	irgsp1_rep	CDS	28194040	28195002	.	-	0	Parent=Os03t0702000-03
Chr03	irgsp1_rep	three_prime_UTR	28193825	28194039	.	-	.	Parent=Os03t0702000-03
Chr03	irgsp1_rep	mRNA	28194027	28195715	.	+	.	ID=Os03t0702100-01;Name=Os03t0702100-01;Locus_id=Os03g0702100;Note=Hypothetical protein.;Transcript_evidence=AK063307 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-113-F11;Expression=AK063307;TENOR=Os03t0702100-01;KEGG=Os03t0702100-01
Chr03	irgsp1_rep	five_prime_UTR	28194027	28195137	.	+	.	Parent=Os03t0702100-01
Chr03	irgsp1_rep	CDS	28195138	28195491	.	+	0	Parent=Os03t0702100-01
Chr03	irgsp1_rep	three_prime_UTR	28195492	28195715	.	+	.	Parent=Os03t0702100-01
Chr03	irgsp1_rep	mRNA	28219432	28221136	.	-	.	ID=Os03t0702400-01;Name=Os03t0702400-01;Locus_id=Os03g0702400;Note=Hypothetical protein.;Transcript_evidence=AK108055 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-137-H10;Expression=AK108055;TENOR=Os03t0702400-01;KEGG=Os03t0702400-01
Chr03	irgsp1_rep	five_prime_UTR	28220146	28221136	.	-	.	Parent=Os03t0702400-01
Chr03	irgsp1_rep	CDS	28219681	28220145	.	-	0	Parent=Os03t0702400-01
Chr03	irgsp1_rep	three_prime_UTR	28219432	28219680	.	-	.	Parent=Os03t0702400-01
Chr03	irgsp1_rep	mRNA	28219703	28221286	.	+	.	ID=Os03t0702500-01;Name=Os03t0702500-01;Locus_id=Os03g0702500;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK064270 (DDBJ%2C Best hit);ORF_evidence=NP_001150595.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=002-105-E07;Expression=AK064270;TENOR=Os03t0702500-01;KEGG=Os03t0702500-01
Chr03	irgsp1_rep	five_prime_UTR	28219703	28219758	.	+	.	Parent=Os03t0702500-01
Chr03	irgsp1_rep	CDS	28219759	28221177	.	+	0	Parent=Os03t0702500-01
Chr03	irgsp1_rep	three_prime_UTR	28221178	28221286	.	+	.	Parent=Os03t0702500-01
Chr03	irgsp1_rep	mRNA	28224449	28225358	.	-	.	ID=Os03t0702600-00;Name=Os03t0702600-00;Locus_id=Os03g0702600;Note=Hypothetical conserved gene.;Transcript_evidence=CT828111 (DDBJ%2C Best hit);ORF_evidence=Q75I87 (UniProt);TENOR=Os03t0702600-00;KEGG=Os03t0702600-00
Chr03	irgsp1_rep	five_prime_UTR	28225297	28225358	.	-	.	Parent=Os03t0702600-00
Chr03	irgsp1_rep	CDS	28224697	28225296	.	-	0	Parent=Os03t0702600-00
Chr03	irgsp1_rep	three_prime_UTR	28224449	28224696	.	-	.	Parent=Os03t0702600-00
Chr03	irgsp1_rep	mRNA	28229114	28233924	.	+	.	ID=Os03t0702700-01;Name=Os03t0702700-01;Locus_id=Os03g0702700;Note=Protein of unknown function DUF250 domain containing protein.;Transcript_evidence=AK103495 (DDBJ%2C Best hit);ORF_evidence=NP_001152118.1 (RefSeq);NIAS_FLcDNA=J033130P17;Expression=AK103495;TENOR=Os03t0702700-01;KEGG=Os03t0702700-01
Chr03	irgsp1_rep	five_prime_UTR	28229114	28229361	.	+	.	Parent=Os03t0702700-01
Chr03	irgsp1_rep	CDS	28229362	28229448	.	+	0	Parent=Os03t0702700-01
Chr03	irgsp1_rep	CDS	28229968	28230075	.	+	0	Parent=Os03t0702700-01
Chr03	irgsp1_rep	CDS	28230323	28230354	.	+	0	Parent=Os03t0702700-01
Chr03	irgsp1_rep	CDS	28230425	28230475	.	+	1	Parent=Os03t0702700-01
Chr03	irgsp1_rep	CDS	28231130	28231191	.	+	1	Parent=Os03t0702700-01
Chr03	irgsp1_rep	CDS	28231265	28231545	.	+	2	Parent=Os03t0702700-01
Chr03	irgsp1_rep	three_prime_UTR	28231546	28232834	.	+	.	Parent=Os03t0702700-01
Chr03	irgsp1_rep	three_prime_UTR	28233374	28233924	.	+	.	Parent=Os03t0702700-01
Chr03	irgsp1_rep	mRNA	28231305	28233929	.	+	.	ID=Os03t0702700-02;Name=Os03t0702700-02;Locus_id=Os03g0702700;Note=Similar to organic anion transporter.;Transcript_evidence=AK058204 (DDBJ%2C Best hit);ORF_evidence=NP_001152118.1 (RefSeq);InterPro=Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=001-010-A06;Expression=AK058204;TENOR=Os03t0702700-02;KEGG=Os03t0702700-02
Chr03	irgsp1_rep	five_prime_UTR	28231305	28231305	.	+	.	Parent=Os03t0702700-02
Chr03	irgsp1_rep	CDS	28231306	28231526	.	+	0	Parent=Os03t0702700-02
Chr03	irgsp1_rep	CDS	28232236	28232501	.	+	1	Parent=Os03t0702700-02
Chr03	irgsp1_rep	CDS	28232740	28232834	.	+	2	Parent=Os03t0702700-02
Chr03	irgsp1_rep	CDS	28233374	28233550	.	+	0	Parent=Os03t0702700-02
Chr03	irgsp1_rep	three_prime_UTR	28233551	28233929	.	+	.	Parent=Os03t0702700-02
Chr03	irgsp1_rep	mRNA	28231449	28233929	.	+	.	ID=Os03t0702700-03;Name=Os03t0702700-03;Locus_id=Os03g0702700;Note=Similar to organic anion transporter.;Transcript_evidence=AK059605 (DDBJ%2C Best hit);ORF_evidence=NP_001152118.1 (RefSeq);InterPro=Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=001-030-E11;Expression=AK059605;TENOR=Os03t0702700-03;KEGG=Os03t0702700-03
Chr03	irgsp1_rep	five_prime_UTR	28231449	28231449	.	+	.	Parent=Os03t0702700-03
Chr03	irgsp1_rep	CDS	28231450	28231526	.	+	0	Parent=Os03t0702700-03
Chr03	irgsp1_rep	CDS	28232236	28232501	.	+	1	Parent=Os03t0702700-03
Chr03	irgsp1_rep	CDS	28232740	28232834	.	+	2	Parent=Os03t0702700-03
Chr03	irgsp1_rep	CDS	28233374	28233550	.	+	0	Parent=Os03t0702700-03
Chr03	irgsp1_rep	three_prime_UTR	28233551	28233929	.	+	.	Parent=Os03t0702700-03
Chr03	irgsp1_rep	mRNA	28236193	28239337	.	+	.	ID=Os03t0702800-01;Name=Os03t0702800-01;Locus_id=Os03g0702800;Note=Similar to Eukaryotic peptide chain release factor subunit 1 (eRF1) (Eukaryotic release factor 1) (TB3-1) (Cl1 protein).;Transcript_evidence=AK121869 (DDBJ%2C Best hit);ORF_evidence=NP_001151538.1 (RefSeq);GO=Biological Process: translational termination (GO:0006415),Cellular Component: cytoplasm (GO:0005737),Molecular Function: translation release factor activity%2C codon specific (GO:0016149);InterPro=Peptide chain release factor eRF1/aRF1 (IPR004403),eRF1 domain 1/Pelota-like (IPR005140),eRF1 domain 2 (IPR005141),eRF1 domain 3 (IPR005142),Peptide Chain Release Factor eRF1/aRF1%2C N-terminal (IPR024049);NIAS_FLcDNA=J033103O08;Expression=AK121869;TENOR=Os03t0702800-01;KEGG=Os03t0702800-01
Chr03	irgsp1_rep	five_prime_UTR	28236193	28236320	.	+	.	Parent=Os03t0702800-01
Chr03	irgsp1_rep	five_prime_UTR	28237753	28237780	.	+	.	Parent=Os03t0702800-01
Chr03	irgsp1_rep	CDS	28237781	28239094	.	+	0	Parent=Os03t0702800-01
Chr03	irgsp1_rep	three_prime_UTR	28239095	28239337	.	+	.	Parent=Os03t0702800-01
Chr03	irgsp1_rep	mRNA	28236236	28239344	.	+	.	ID=Os03t0702800-02;Name=Os03t0702800-02;Locus_id=Os03g0702800;Note=Similar to Eukaryotic peptide chain release factor subunit 1 (eRF1) (Eukaryotic release factor 1) (TB3-1) (Cl1 protein).;Transcript_evidence=AK102687 (DDBJ%2C Best hit);ORF_evidence=NP_001151538.1 (RefSeq);GO=Biological Process: translational termination (GO:0006415),Cellular Component: cytoplasm (GO:0005737),Molecular Function: translation release factor activity%2C codon specific (GO:0016149);InterPro=Peptide chain release factor eRF1/aRF1 (IPR004403),eRF1 domain 1/Pelota-like (IPR005140),eRF1 domain 2 (IPR005141),eRF1 domain 3 (IPR005142),Peptide Chain Release Factor eRF1/aRF1%2C N-terminal (IPR024049);NIAS_FLcDNA=J033102O11;Expression=AK102687;TENOR=Os03t0702800-02;KEGG=Os03t0702800-02
Chr03	irgsp1_rep	five_prime_UTR	28236236	28236320	.	+	.	Parent=Os03t0702800-02
Chr03	irgsp1_rep	five_prime_UTR	28237753	28237780	.	+	.	Parent=Os03t0702800-02
Chr03	irgsp1_rep	CDS	28237781	28239094	.	+	0	Parent=Os03t0702800-02
Chr03	irgsp1_rep	three_prime_UTR	28239095	28239344	.	+	.	Parent=Os03t0702800-02
Chr03	irgsp1_rep	mRNA	28239396	28240049	.	-	.	ID=Os03t0702900-00;Name=Os03t0702900-00;Locus_id=Os03g0702900;Oryzabase Gene Symbol Synonym(s)=OsSTA111;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q75I91 (UniProt);Oryzabase=19402;TENOR=Os03t0702900-00
Chr03	irgsp1_rep	CDS	28239396	28240049	.	-	0	Parent=Os03t0702900-00
Chr03	irgsp1_rep	mRNA	28240368	28245227	.	-	.	ID=Os03t0703000-01;Name=Os03t0703000-01;Locus_id=Os03g0703000;CGSNL Gene Symbol=BGLU7;CGSNL Gene Name=BETA-GLUCOSIDASE 7;Oryzabase Gene Symbol Synonym(s)=Os3bglu7%2C Os3BGlu7%2C 3BGLU7%2C BGlu7%2C BGlu1%2C bglu1;Oryzabase Gene Name Synonym(s)=beta-glucosidase 7;Note=Similar to Beta-glucosidase.;Transcript_evidence=AK100165 (DDBJ%2C Best hit),AK103027 (DDBJ%2C Best hit),AK105026 (DDBJ%2C Best hit);ORF_evidence=Q75I93 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J023021K07,J033117C01,001-011-H02;Oryzabase=12081;Expression=AK100165;TENOR=Os03t0703000-01;KEGG=Os03t0703000-01 (EC:3.2.1.21)
Chr03	irgsp1_rep	five_prime_UTR	28245132	28245227	.	-	.	Parent=Os03t0703000-01
Chr03	irgsp1_rep	CDS	28244894	28245131	.	-	0	Parent=Os03t0703000-01
Chr03	irgsp1_rep	CDS	28243949	28244007	.	-	2	Parent=Os03t0703000-01
Chr03	irgsp1_rep	CDS	28243115	28243190	.	-	0	Parent=Os03t0703000-01
Chr03	irgsp1_rep	CDS	28242938	28243009	.	-	2	Parent=Os03t0703000-01
Chr03	irgsp1_rep	CDS	28242731	28242818	.	-	2	Parent=Os03t0703000-01
Chr03	irgsp1_rep	CDS	28242116	28242359	.	-	1	Parent=Os03t0703000-01
Chr03	irgsp1_rep	CDS	28241747	28241862	.	-	0	Parent=Os03t0703000-01
Chr03	irgsp1_rep	CDS	28241390	28241607	.	-	1	Parent=Os03t0703000-01
Chr03	irgsp1_rep	CDS	28241266	28241297	.	-	2	Parent=Os03t0703000-01
Chr03	irgsp1_rep	CDS	28241030	28241132	.	-	0	Parent=Os03t0703000-01
Chr03	irgsp1_rep	CDS	28240649	28240917	.	-	2	Parent=Os03t0703000-01
Chr03	irgsp1_rep	three_prime_UTR	28240368	28240648	.	-	.	Parent=Os03t0703000-01
Chr03	irgsp1_rep	mRNA	28240401	28242802	.	-	.	ID=Os03t0703000-03;Name=Os03t0703000-03;Locus_id=Os03g0703000;CGSNL Gene Symbol=BGLU7;CGSNL Gene Name=BETA-GLUCOSIDASE 7;Oryzabase Gene Symbol Synonym(s)=Os3bglu7%2C Os3BGlu7%2C 3BGLU7%2C BGlu7%2C BGlu1%2C bglu1;Oryzabase Gene Name Synonym(s)=beta-glucosidase 7;Note=Similar to Beta-glucosidase.;Transcript_evidence=AK059920 (DDBJ%2C Best hit);ORF_evidence=Q75I93 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=006-209-G08;Oryzabase=12081;Expression=AK059920;TENOR=Os03t0703000-03;KEGG=Os03t0703000-03 (EC:3.2.1.21)
Chr03	irgsp1_rep	five_prime_UTR	28242802	28242802	.	-	.	Parent=Os03t0703000-03
Chr03	irgsp1_rep	CDS	28242731	28242801	.	-	0	Parent=Os03t0703000-03
Chr03	irgsp1_rep	CDS	28242116	28242359	.	-	1	Parent=Os03t0703000-03
Chr03	irgsp1_rep	CDS	28241747	28241862	.	-	0	Parent=Os03t0703000-03
Chr03	irgsp1_rep	CDS	28241390	28241607	.	-	1	Parent=Os03t0703000-03
Chr03	irgsp1_rep	CDS	28241266	28241297	.	-	2	Parent=Os03t0703000-03
Chr03	irgsp1_rep	CDS	28241030	28241132	.	-	0	Parent=Os03t0703000-03
Chr03	irgsp1_rep	CDS	28240649	28240917	.	-	2	Parent=Os03t0703000-03
Chr03	irgsp1_rep	three_prime_UTR	28240401	28240648	.	-	.	Parent=Os03t0703000-03
Chr03	irgsp1_rep	mRNA	28248757	28254013	.	-	.	ID=Os03t0703100-01;Name=Os03t0703100-01;Locus_id=Os03g0703100;CGSNL Gene Symbol=BGLU8;CGSNL Gene Name=BETA-GLUCOSIDASE 8;Oryzabase Gene Symbol Synonym(s)=Os3bglu8%2C Os3BGlu8;Oryzabase Gene Name Synonym(s)=beta-glucosidase 8;Note=Similar to Beta-glucosidase.;Transcript_evidence=AK120790 (DDBJ%2C Best hit);ORF_evidence=Q75I94 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J023011K21;Oryzabase=12082;Expression=AK120790;TENOR=Os03t0703100-01;KEGG=Os03t0703100-01
Chr03	irgsp1_rep	five_prime_UTR	28253928	28254013	.	-	.	Parent=Os03t0703100-01
Chr03	irgsp1_rep	CDS	28253669	28253927	.	-	0	Parent=Os03t0703100-01
Chr03	irgsp1_rep	CDS	28253229	28253287	.	-	2	Parent=Os03t0703100-01
Chr03	irgsp1_rep	CDS	28252360	28252435	.	-	0	Parent=Os03t0703100-01
Chr03	irgsp1_rep	CDS	28252198	28252269	.	-	2	Parent=Os03t0703100-01
Chr03	irgsp1_rep	CDS	28252025	28252112	.	-	2	Parent=Os03t0703100-01
Chr03	irgsp1_rep	CDS	28251359	28251602	.	-	1	Parent=Os03t0703100-01
Chr03	irgsp1_rep	CDS	28250208	28250323	.	-	0	Parent=Os03t0703100-01
Chr03	irgsp1_rep	CDS	28249901	28250118	.	-	1	Parent=Os03t0703100-01
Chr03	irgsp1_rep	CDS	28249774	28249805	.	-	2	Parent=Os03t0703100-01
Chr03	irgsp1_rep	CDS	28249563	28249665	.	-	0	Parent=Os03t0703100-01
Chr03	irgsp1_rep	CDS	28249044	28249483	.	-	2	Parent=Os03t0703100-01
Chr03	irgsp1_rep	three_prime_UTR	28248757	28249043	.	-	.	Parent=Os03t0703100-01
Chr03	irgsp1_rep	mRNA	28248835	28252049	.	-	.	ID=Os03t0703100-02;Name=Os03t0703100-02;Locus_id=Os03g0703100;CGSNL Gene Symbol=BGLU8;CGSNL Gene Name=BETA-GLUCOSIDASE 8;Oryzabase Gene Symbol Synonym(s)=Os3bglu8%2C Os3BGlu8;Oryzabase Gene Name Synonym(s)=beta-glucosidase 8;Note=Similar to beta-glucosidase.;Transcript_evidence=AK105850 (DDBJ%2C Best hit);ORF_evidence=Q75I94 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-203-G08;Oryzabase=12082;Expression=AK105850;TENOR=Os03t0703100-02;KEGG=Os03t0703100-02
Chr03	irgsp1_rep	five_prime_UTR	28252048	28252049	.	-	.	Parent=Os03t0703100-02
Chr03	irgsp1_rep	CDS	28252025	28252047	.	-	0	Parent=Os03t0703100-02
Chr03	irgsp1_rep	CDS	28251359	28251602	.	-	1	Parent=Os03t0703100-02
Chr03	irgsp1_rep	CDS	28250208	28250323	.	-	0	Parent=Os03t0703100-02
Chr03	irgsp1_rep	CDS	28249901	28250118	.	-	1	Parent=Os03t0703100-02
Chr03	irgsp1_rep	CDS	28249774	28249805	.	-	2	Parent=Os03t0703100-02
Chr03	irgsp1_rep	CDS	28249563	28249665	.	-	0	Parent=Os03t0703100-02
Chr03	irgsp1_rep	CDS	28249044	28249483	.	-	2	Parent=Os03t0703100-02
Chr03	irgsp1_rep	three_prime_UTR	28248835	28249043	.	-	.	Parent=Os03t0703100-02
Chr03	irgsp1_rep	mRNA	28248757	28251498	.	-	.	ID=Os03t0703100-03;Name=Os03t0703100-03;Locus_id=Os03g0703100;CGSNL Gene Symbol=BGLU8;CGSNL Gene Name=BETA-GLUCOSIDASE 8;Oryzabase Gene Symbol Synonym(s)=Os3bglu8%2C Os3BGlu8;Oryzabase Gene Name Synonym(s)=beta-glucosidase 8;Note=Similar to beta-glucosidase.;Transcript_evidence=AK059517 (DDBJ%2C Best hit);ORF_evidence=Q75I94 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-029-C01;Oryzabase=12082;Expression=AK059517;TENOR=Os03t0703100-03;KEGG=Os03t0703100-03
Chr03	irgsp1_rep	five_prime_UTR	28251497	28251498	.	-	.	Parent=Os03t0703100-03
Chr03	irgsp1_rep	CDS	28251359	28251496	.	-	0	Parent=Os03t0703100-03
Chr03	irgsp1_rep	CDS	28250208	28250323	.	-	0	Parent=Os03t0703100-03
Chr03	irgsp1_rep	CDS	28249901	28250118	.	-	1	Parent=Os03t0703100-03
Chr03	irgsp1_rep	CDS	28249774	28249805	.	-	2	Parent=Os03t0703100-03
Chr03	irgsp1_rep	CDS	28249563	28249665	.	-	0	Parent=Os03t0703100-03
Chr03	irgsp1_rep	CDS	28249044	28249483	.	-	2	Parent=Os03t0703100-03
Chr03	irgsp1_rep	three_prime_UTR	28248757	28249043	.	-	.	Parent=Os03t0703100-03
Chr03	irgsp1_rep	mRNA	28254492	28259877	.	-	.	ID=Os03t0703200-01;Name=Os03t0703200-01;Locus_id=Os03g0703200;Oryzabase Gene Symbol Synonym(s)=OsSERL8%2C OsBAK1-6%2C SERL8%2C BAK1-6%2C TMS10L;Oryzabase Gene Name Synonym(s)=SERK-like gene 8%2C bri1-associated receptor kinase 1 (BAK1) homologue 6%2C TMS10-Like%2C Thermo-Sensitive Genic Male Sterile 10-like;Note=Similar to leucine-rich repeat family protein.;Transcript_evidence=AK111846 (DDBJ%2C Best hit);ORF_evidence=XP_002873449.1 (RefSeq);InterPro=Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J023143O14;Oryzabase=13031;TENOR=Os03t0703200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	28259566	28259877	.	-	.	Parent=Os03t0703200-01
Chr03	irgsp1_rep	five_prime_UTR	28258646	28258789	.	-	.	Parent=Os03t0703200-01
Chr03	irgsp1_rep	CDS	28258579	28258645	.	-	0	Parent=Os03t0703200-01
Chr03	irgsp1_rep	CDS	28258332	28258464	.	-	2	Parent=Os03t0703200-01
Chr03	irgsp1_rep	CDS	28257848	28257971	.	-	1	Parent=Os03t0703200-01
Chr03	irgsp1_rep	CDS	28257605	28257619	.	-	0	Parent=Os03t0703200-01
Chr03	irgsp1_rep	three_prime_UTR	28257476	28257604	.	-	.	Parent=Os03t0703200-01
Chr03	irgsp1_rep	three_prime_UTR	28257326	28257397	.	-	.	Parent=Os03t0703200-01
Chr03	irgsp1_rep	three_prime_UTR	28257177	28257242	.	-	.	Parent=Os03t0703200-01
Chr03	irgsp1_rep	three_prime_UTR	28257021	28257091	.	-	.	Parent=Os03t0703200-01
Chr03	irgsp1_rep	three_prime_UTR	28256772	28256912	.	-	.	Parent=Os03t0703200-01
Chr03	irgsp1_rep	three_prime_UTR	28255932	28256273	.	-	.	Parent=Os03t0703200-01
Chr03	irgsp1_rep	three_prime_UTR	28255277	28255671	.	-	.	Parent=Os03t0703200-01
Chr03	irgsp1_rep	three_prime_UTR	28254492	28254983	.	-	.	Parent=Os03t0703200-01
Chr03	irgsp1_rep	mRNA	28254433	28258987	.	-	.	ID=Os03t0703200-02;Name=Os03t0703200-02;Locus_id=Os03g0703200;RAP-DB Gene Symbol Synonym(s)=TMS10L;RAP-DB Gene Name Synonym(s)=TMS10-Like;Oryzabase Gene Symbol Synonym(s)=OsSERL8%2C OsBAK1-6%2C SERL8%2C BAK1-6%2C TMS10L;Oryzabase Gene Name Synonym(s)=SERK-like gene 8%2C bri1-associated receptor kinase 1 (BAK1) homologue 6%2C TMS10-Like%2C Thermo-Sensitive Genic Male Sterile 10-like;Note=Leucine-rich repeat receptor-like kinase%2C Control of anther development and pollen fertility under low temperature;Transcript_evidence=Inferred from literature;ORF_evidence=Q75I96;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Leucine-rich repeat domain superfamily (IPR032675),Protein kinase-like domain superfamily (IPR011009),Leucine-rich repeat-containing N-terminal%2C plant-type (IPR013210),Protein kinase domain (IPR000719),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);Manual Curation=December 6%2C 2017;Literature_PMID=29087306;Oryzabase=13031
Chr03	irgsp1_rep	five_prime_UTR	28258646	28258987	.	-	.	Parent=Os03t0703200-02
Chr03	irgsp1_rep	CDS	28258579	28258645	.	-	0	Parent=Os03t0703200-02
Chr03	irgsp1_rep	CDS	28258332	28258464	.	-	2	Parent=Os03t0703200-02
Chr03	irgsp1_rep	CDS	28257848	28257919	.	-	1	Parent=Os03t0703200-02
Chr03	irgsp1_rep	CDS	28257476	28257619	.	-	1	Parent=Os03t0703200-02
Chr03	irgsp1_rep	CDS	28257326	28257397	.	-	1	Parent=Os03t0703200-02
Chr03	irgsp1_rep	CDS	28257177	28257242	.	-	1	Parent=Os03t0703200-02
Chr03	irgsp1_rep	CDS	28257021	28257091	.	-	1	Parent=Os03t0703200-02
Chr03	irgsp1_rep	CDS	28256772	28256912	.	-	2	Parent=Os03t0703200-02
Chr03	irgsp1_rep	CDS	28255932	28256273	.	-	2	Parent=Os03t0703200-02
Chr03	irgsp1_rep	CDS	28255277	28255671	.	-	2	Parent=Os03t0703200-02
Chr03	irgsp1_rep	CDS	28254669	28254983	.	-	0	Parent=Os03t0703200-02
Chr03	irgsp1_rep	three_prime_UTR	28254433	28254668	.	-	.	Parent=Os03t0703200-02
Chr03	irgsp1_rep	mRNA	28260597	28266450	.	-	.	ID=Os03t0703300-01;Name=Os03t0703300-01;Locus_id=Os03g0703300;Note=Calponin-like actin-binding domain containing protein.;Transcript_evidence=AK073831 (DDBJ%2C Best hit),AK240677 (DDBJ%2C Best hit);ORF_evidence=A2XL45 (UniProt);NIAS_FLcDNA=J033067N14,J033144O18;TENOR=Os03t0703300-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	28266188	28266450	.	-	.	Parent=Os03t0703300-01
Chr03	irgsp1_rep	CDS	28266080	28266187	.	-	0	Parent=Os03t0703300-01
Chr03	irgsp1_rep	CDS	28263855	28263946	.	-	0	Parent=Os03t0703300-01
Chr03	irgsp1_rep	CDS	28263046	28263196	.	-	1	Parent=Os03t0703300-01
Chr03	irgsp1_rep	CDS	28262510	28262641	.	-	0	Parent=Os03t0703300-01
Chr03	irgsp1_rep	CDS	28262247	28262396	.	-	0	Parent=Os03t0703300-01
Chr03	irgsp1_rep	CDS	28261414	28262100	.	-	0	Parent=Os03t0703300-01
Chr03	irgsp1_rep	CDS	28261138	28261307	.	-	0	Parent=Os03t0703300-01
Chr03	irgsp1_rep	CDS	28260903	28261038	.	-	1	Parent=Os03t0703300-01
Chr03	irgsp1_rep	three_prime_UTR	28260597	28260902	.	-	.	Parent=Os03t0703300-01
Chr03	irgsp1_rep	mRNA	28260587	28263122	.	-	.	ID=Os03t0703300-02;Name=Os03t0703300-02;Locus_id=Os03g0703300;Note=Hypothetical conserved gene.;Transcript_evidence=AK062209 (DDBJ%2C Best hit);ORF_evidence=A2XL45 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Calponin homology domain (IPR001715);NIAS_FLcDNA=001-046-H11;Expression=AK062209;TENOR=Os03t0703300-02;KEGG=Os03t0703300-02
Chr03	irgsp1_rep	five_prime_UTR	28263121	28263122	.	-	.	Parent=Os03t0703300-02
Chr03	irgsp1_rep	CDS	28263046	28263120	.	-	0	Parent=Os03t0703300-02
Chr03	irgsp1_rep	CDS	28262510	28262641	.	-	0	Parent=Os03t0703300-02
Chr03	irgsp1_rep	CDS	28262247	28262396	.	-	0	Parent=Os03t0703300-02
Chr03	irgsp1_rep	CDS	28261414	28262100	.	-	0	Parent=Os03t0703300-02
Chr03	irgsp1_rep	CDS	28261138	28261307	.	-	0	Parent=Os03t0703300-02
Chr03	irgsp1_rep	CDS	28260903	28261038	.	-	1	Parent=Os03t0703300-02
Chr03	irgsp1_rep	three_prime_UTR	28260587	28260902	.	-	.	Parent=Os03t0703300-02
Chr03	irgsp1_rep	mRNA	28269607	28275709	.	-	.	ID=Os03t0703400-01;Name=Os03t0703400-01;Locus_id=Os03g0703400;Note=Similar to MAP3K beta 3 protein kinase (EC 2.7.1.37) (Fragment).;Transcript_evidence=AK100023 (DDBJ%2C Best hit);ORF_evidence=B8AQA2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013145O20;Expression=AK100023;TENOR=Os03t0703400-01;KEGG=Os03t0703400-01 (EC:2.7.1.37)
Chr03	irgsp1_rep	five_prime_UTR	28275548	28275709	.	-	.	Parent=Os03t0703400-01
Chr03	irgsp1_rep	CDS	28274343	28275547	.	-	0	Parent=Os03t0703400-01
Chr03	irgsp1_rep	CDS	28272605	28272689	.	-	1	Parent=Os03t0703400-01
Chr03	irgsp1_rep	CDS	28272389	28272451	.	-	0	Parent=Os03t0703400-01
Chr03	irgsp1_rep	CDS	28272072	28272229	.	-	0	Parent=Os03t0703400-01
Chr03	irgsp1_rep	CDS	28271542	28271617	.	-	1	Parent=Os03t0703400-01
Chr03	irgsp1_rep	CDS	28271398	28271457	.	-	0	Parent=Os03t0703400-01
Chr03	irgsp1_rep	CDS	28271137	28271244	.	-	0	Parent=Os03t0703400-01
Chr03	irgsp1_rep	CDS	28270025	28270234	.	-	0	Parent=Os03t0703400-01
Chr03	irgsp1_rep	three_prime_UTR	28269978	28270024	.	-	.	Parent=Os03t0703400-01
Chr03	irgsp1_rep	three_prime_UTR	28269607	28269880	.	-	.	Parent=Os03t0703400-01
Chr03	irgsp1_rep	mRNA	28289355	28290121	.	+	.	ID=Os03t0703600-01;Name=Os03t0703600-01;Locus_id=Os03g0703600;Note=Conserved hypothetical protein.;Transcript_evidence=AK107066 (DDBJ%2C Best hit);ORF_evidence=Q75IA1 (UniProt);NIAS_FLcDNA=002-121-E06;Expression=AK107066;TENOR=Os03t0703600-01;KEGG=Os03t0703600-01
Chr03	irgsp1_rep	CDS	28289355	28289693	.	+	0	Parent=Os03t0703600-01
Chr03	irgsp1_rep	CDS	28289803	28289934	.	+	0	Parent=Os03t0703600-01
Chr03	irgsp1_rep	three_prime_UTR	28289935	28290121	.	+	.	Parent=Os03t0703600-01
Chr03	irgsp1_rep	mRNA	28297146	28300290	.	+	.	ID=Os03t0703900-01;Name=Os03t0703900-01;Locus_id=Os03g0703900;Note=SNARE associated Golgi protein domain containing protein.;Transcript_evidence=AK073877 (DDBJ%2C Best hit);ORF_evidence=NP_001149428.1 (RefSeq);InterPro=SNARE associated Golgi protein (IPR015414);NIAS_FLcDNA=J033073B06;Expression=AK073877;TENOR=Os03t0703900-01;KEGG=Os03t0703900-01
Chr03	irgsp1_rep	five_prime_UTR	28297146	28297353	.	+	.	Parent=Os03t0703900-01
Chr03	irgsp1_rep	CDS	28297354	28297613	.	+	0	Parent=Os03t0703900-01
Chr03	irgsp1_rep	CDS	28298840	28299110	.	+	1	Parent=Os03t0703900-01
Chr03	irgsp1_rep	CDS	28299242	28299412	.	+	0	Parent=Os03t0703900-01
Chr03	irgsp1_rep	CDS	28299840	28299971	.	+	0	Parent=Os03t0703900-01
Chr03	irgsp1_rep	three_prime_UTR	28299972	28300290	.	+	.	Parent=Os03t0703900-01
Chr03	irgsp1_rep	mRNA	28301306	28303182	.	+	.	ID=Os03t0704000-00;Name=Os03t0704000-00;Locus_id=Os03g0704000;Note=Similar to 30S ribosomal protein S13.;Transcript_evidence=EU325989 (DDBJ%2C Best hit);ORF_evidence=B6TG65 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S13 (IPR001892),Ribosomal protein S13-like%2C H2TH (IPR010979),Ribosomal protein S13%2C conserved site (IPR018269),Ribosomal protein S13%2C bacterial-type (IPR019980);TENOR=Os03t0704000-00;KEGG=Os03t0704000-00
Chr03	irgsp1_rep	five_prime_UTR	28301306	28301381	.	+	.	Parent=Os03t0704000-00
Chr03	irgsp1_rep	CDS	28301382	28301480	.	+	0	Parent=Os03t0704000-00
Chr03	irgsp1_rep	CDS	28302175	28302414	.	+	0	Parent=Os03t0704000-00
Chr03	irgsp1_rep	CDS	28302798	28302974	.	+	0	Parent=Os03t0704000-00
Chr03	irgsp1_rep	three_prime_UTR	28302975	28303182	.	+	.	Parent=Os03t0704000-00
Chr03	irgsp1_rep	mRNA	28304985	28307930	.	+	.	ID=Os03t0704100-01;Name=Os03t0704100-01;Locus_id=Os03g0704100;Note=Similar to structural molecule.;Transcript_evidence=AK070474 (DDBJ%2C Best hit);ORF_evidence=NP_001147518.1 (RefSeq);GO=Cellular Component: chloroplast (GO:0009507),Molecular Function: structural molecule activity (GO:0005198);InterPro=Plastid lipid-associated protein/fibrillin conserved domain (IPR006843);NIAS_FLcDNA=J023052I15;TENOR=Os03t0704100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	28304985	28304985	.	+	.	Parent=Os03t0704100-01
Chr03	irgsp1_rep	CDS	28304986	28305381	.	+	0	Parent=Os03t0704100-01
Chr03	irgsp1_rep	CDS	28305480	28305593	.	+	0	Parent=Os03t0704100-01
Chr03	irgsp1_rep	CDS	28305733	28305831	.	+	0	Parent=Os03t0704100-01
Chr03	irgsp1_rep	CDS	28306402	28306476	.	+	0	Parent=Os03t0704100-01
Chr03	irgsp1_rep	CDS	28306913	28306980	.	+	0	Parent=Os03t0704100-01
Chr03	irgsp1_rep	CDS	28307617	28307689	.	+	1	Parent=Os03t0704100-01
Chr03	irgsp1_rep	three_prime_UTR	28307690	28307930	.	+	.	Parent=Os03t0704100-01
Chr03	irgsp1_rep	mRNA	28308368	28312269	.	-	.	ID=Os03t0704200-01;Name=Os03t0704200-01;Locus_id=Os03g0704200;Oryzabase Gene Symbol Synonym(s)=OsSET17%2C SDG716;Oryzabase Gene Name Synonym(s)=SET protein 17;Note=Zinc finger%2C MYND-type domain containing protein.;Transcript_evidence=AK071176 (DDBJ%2C Best hit);ORF_evidence=Q10E92 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C MYND-type (IPR002893);NIAS_FLcDNA=J023083O08;Oryzabase=13382;Expression=AK071176;TENOR=Os03t0704200-01;KEGG=Os03t0704200-01
Chr03	irgsp1_rep	five_prime_UTR	28312157	28312269	.	-	.	Parent=Os03t0704200-01
Chr03	irgsp1_rep	CDS	28311982	28312156	.	-	0	Parent=Os03t0704200-01
Chr03	irgsp1_rep	CDS	28311620	28311765	.	-	2	Parent=Os03t0704200-01
Chr03	irgsp1_rep	CDS	28311330	28311464	.	-	0	Parent=Os03t0704200-01
Chr03	irgsp1_rep	CDS	28311156	28311210	.	-	0	Parent=Os03t0704200-01
Chr03	irgsp1_rep	CDS	28311072	28311085	.	-	2	Parent=Os03t0704200-01
Chr03	irgsp1_rep	three_prime_UTR	28310953	28311071	.	-	.	Parent=Os03t0704200-01
Chr03	irgsp1_rep	three_prime_UTR	28310393	28310481	.	-	.	Parent=Os03t0704200-01
Chr03	irgsp1_rep	three_prime_UTR	28310212	28310293	.	-	.	Parent=Os03t0704200-01
Chr03	irgsp1_rep	three_prime_UTR	28310002	28310100	.	-	.	Parent=Os03t0704200-01
Chr03	irgsp1_rep	three_prime_UTR	28309819	28309897	.	-	.	Parent=Os03t0704200-01
Chr03	irgsp1_rep	three_prime_UTR	28309559	28309678	.	-	.	Parent=Os03t0704200-01
Chr03	irgsp1_rep	three_prime_UTR	28309345	28309454	.	-	.	Parent=Os03t0704200-01
Chr03	irgsp1_rep	three_prime_UTR	28309188	28309257	.	-	.	Parent=Os03t0704200-01
Chr03	irgsp1_rep	three_prime_UTR	28309041	28309104	.	-	.	Parent=Os03t0704200-01
Chr03	irgsp1_rep	three_prime_UTR	28308368	28308744	.	-	.	Parent=Os03t0704200-01
Chr03	irgsp1_rep	mRNA	28314296	28319907	.	+	.	ID=Os03t0704400-01;Name=Os03t0704400-01;Locus_id=Os03g0704400;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK101297 (DDBJ%2C Best hit);ORF_evidence=Q8LN55 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033033I19;Expression=AK101297;TENOR=Os03t0704400-01;KEGG=Os03t0704400-01 (EC:2.7.12.1)
Chr03	irgsp1_rep	five_prime_UTR	28314296	28314541	.	+	.	Parent=Os03t0704400-01
Chr03	irgsp1_rep	CDS	28314542	28314743	.	+	0	Parent=Os03t0704400-01
Chr03	irgsp1_rep	CDS	28315053	28315481	.	+	2	Parent=Os03t0704400-01
Chr03	irgsp1_rep	CDS	28315639	28316408	.	+	2	Parent=Os03t0704400-01
Chr03	irgsp1_rep	CDS	28317648	28317839	.	+	0	Parent=Os03t0704400-01
Chr03	irgsp1_rep	CDS	28318718	28318879	.	+	0	Parent=Os03t0704400-01
Chr03	irgsp1_rep	CDS	28318997	28319467	.	+	0	Parent=Os03t0704400-01
Chr03	irgsp1_rep	three_prime_UTR	28319468	28319907	.	+	.	Parent=Os03t0704400-01
Chr03	irgsp1_rep	mRNA	28329953	28339165	.	+	.	ID=Os03t0704700-01;Name=Os03t0704700-01;Locus_id=Os03g0704700;Note=Similar to Oxysterol-binding protein%2C expressed.;Transcript_evidence=AK065804 (DDBJ%2C Best hit);ORF_evidence=Q10E86 (UniProt);InterPro=Oxysterol-binding protein (IPR000648);NIAS_FLcDNA=J013037L05;TENOR=Os03t0704700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	28329953	28329998	.	+	.	Parent=Os03t0704700-01
Chr03	irgsp1_rep	five_prime_UTR	28330393	28330609	.	+	.	Parent=Os03t0704700-01
Chr03	irgsp1_rep	five_prime_UTR	28330694	28330828	.	+	.	Parent=Os03t0704700-01
Chr03	irgsp1_rep	CDS	28330829	28331059	.	+	0	Parent=Os03t0704700-01
Chr03	irgsp1_rep	CDS	28333868	28334074	.	+	0	Parent=Os03t0704700-01
Chr03	irgsp1_rep	three_prime_UTR	28334075	28334307	.	+	.	Parent=Os03t0704700-01
Chr03	irgsp1_rep	three_prime_UTR	28334878	28335033	.	+	.	Parent=Os03t0704700-01
Chr03	irgsp1_rep	three_prime_UTR	28335515	28335682	.	+	.	Parent=Os03t0704700-01
Chr03	irgsp1_rep	three_prime_UTR	28335760	28335900	.	+	.	Parent=Os03t0704700-01
Chr03	irgsp1_rep	three_prime_UTR	28337744	28337974	.	+	.	Parent=Os03t0704700-01
Chr03	irgsp1_rep	three_prime_UTR	28338048	28338161	.	+	.	Parent=Os03t0704700-01
Chr03	irgsp1_rep	three_prime_UTR	28338693	28339165	.	+	.	Parent=Os03t0704700-01
Chr03	irgsp1_rep	mRNA	28334900	28336670	.	-	.	ID=Os03t0704901-01;Name=Os03t0704901-01;Locus_id=Os03g0704901;Note=Non-protein coding transcript.;Transcript_evidence=AK288874 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090078M17;TENOR=Os03t0704901-01
Chr03	irgsp1_rep	exon	28334900	28336670	.	-	.	Parent=Os03t0704901-01
Chr03	irgsp1_rep	mRNA	28347450	28348296	.	-	.	ID=Os03t0705101-00;Name=Os03t0705101-00;Locus_id=Os03g0705101;Note=Non-protein coding transcript.;Transcript_evidence=CT835123 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os03t0705101-00
Chr03	irgsp1_rep	exon	28347450	28348296	.	-	.	Parent=Os03t0705101-00
Chr03	irgsp1_rep	mRNA	28358127	28362611	.	-	.	ID=Os03t0705300-01;Name=Os03t0705300-01;Locus_id=Os03g0705300;RAP-DB Gene Symbol Synonym(s)=OsPIP5K1;RAP-DB Gene Name Synonym(s)=phosphatidylinositol-4-phosphate 5-kinase 1;CGSNL Gene Symbol=PIP5K1;CGSNL Gene Name=PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 1;Oryzabase Gene Symbol Synonym(s)=OsPIP5K1;Oryzabase Gene Name Synonym(s)=phosphatidylinositol-4-phosphate 5-kinase 1;Note=A member of the phosphatidylinositol-4-phosphate 5-kinase family%2C Regulation of the uniform growth of main shoot and tillers;Transcript_evidence=AK120249;ORF_evidence=Q8LN60;GO=Biological Process: phosphatidylinositol metabolic process (GO:0046488),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphatidylinositol phosphate kinase activity (GO:0016307),Molecular Function: 1-phosphatidylinositol-4-phosphate 5-kinase activity (GO:0016308);InterPro=Phosphatidylinositol-4-phosphate 5-kinase%2C N-terminal (IPR027484),Phosphatidylinositol-4-phosphate 5-kinase%2C C-terminal (IPR027483),Phosphatidylinositol-4-phosphate 5-kinase%2C plant (IPR017163),Phosphatidylinositol-4-phosphate 5-kinase%2C core (IPR002498),MORN motif (IPR003409);NIAS_FLcDNA=J013045D05;Manual Curation=October 7%2C 2019;Literature_PMID=31550392;Oryzabase=23343;TENOR=Os03t0705300-01;Subcellular location=nucleus (GO:0005634), plasma membrane (GO:0005886)
Chr03	irgsp1_rep	five_prime_UTR	28362393	28362611	.	-	.	Parent=Os03t0705300-01
Chr03	irgsp1_rep	CDS	28361371	28362392	.	-	0	Parent=Os03t0705300-01
Chr03	irgsp1_rep	CDS	28361106	28361273	.	-	1	Parent=Os03t0705300-01
Chr03	irgsp1_rep	CDS	28360839	28361004	.	-	1	Parent=Os03t0705300-01
Chr03	irgsp1_rep	CDS	28360464	28360574	.	-	0	Parent=Os03t0705300-01
Chr03	irgsp1_rep	CDS	28360196	28360389	.	-	0	Parent=Os03t0705300-01
Chr03	irgsp1_rep	CDS	28359980	28360110	.	-	1	Parent=Os03t0705300-01
Chr03	irgsp1_rep	CDS	28359806	28359899	.	-	2	Parent=Os03t0705300-01
Chr03	irgsp1_rep	CDS	28358670	28358979	.	-	1	Parent=Os03t0705300-01
Chr03	irgsp1_rep	three_prime_UTR	28358127	28358669	.	-	.	Parent=Os03t0705300-01
Chr03	irgsp1_rep	mRNA	28358120	28362102	.	-	.	ID=Os03t0705300-02;Name=Os03t0705300-02;Locus_id=Os03g0705300;CGSNL Gene Symbol=PIP5K1;CGSNL Gene Name=PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 1;Oryzabase Gene Symbol Synonym(s)=OsPIP5K1;Oryzabase Gene Name Synonym(s)=phosphatidylinositol-4-phosphate 5-kinase 1;Note=Phosphatidylinositol-4-phosphate 5-kinase%2C core domain containing protein.;Transcript_evidence=AK102312 (DDBJ%2C Best hit);ORF_evidence=B8AQB0 (UniProt);GO=Biological Process: phosphatidylinositol metabolic process (GO:0046488),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphatidylinositol phosphate kinase activity (GO:0016307),Molecular Function: 1-phosphatidylinositol-4-phosphate 5-kinase activity (GO:0016308);InterPro=Phosphatidylinositol-4-phosphate 5-kinase%2C core (IPR002498),MORN motif (IPR003409),Phosphatidylinositol-4-phosphate 5-kinase%2C core%2C subgroup (IPR016034),Phosphatidylinositol-4-phosphate 5-kinase%2C plant (IPR017163),Phosphatidylinositol-4-phosphate 5-kinase (IPR023610);NIAS_FLcDNA=J033090E08;Oryzabase=23343;TENOR=Os03t0705300-02
Chr03	irgsp1_rep	five_prime_UTR	28362102	28362102	.	-	.	Parent=Os03t0705300-02
Chr03	irgsp1_rep	CDS	28361371	28362101	.	-	0	Parent=Os03t0705300-02
Chr03	irgsp1_rep	CDS	28361106	28361273	.	-	1	Parent=Os03t0705300-02
Chr03	irgsp1_rep	CDS	28360839	28361004	.	-	1	Parent=Os03t0705300-02
Chr03	irgsp1_rep	CDS	28360464	28360574	.	-	0	Parent=Os03t0705300-02
Chr03	irgsp1_rep	CDS	28360196	28360389	.	-	0	Parent=Os03t0705300-02
Chr03	irgsp1_rep	CDS	28359980	28360110	.	-	1	Parent=Os03t0705300-02
Chr03	irgsp1_rep	CDS	28359806	28359899	.	-	2	Parent=Os03t0705300-02
Chr03	irgsp1_rep	CDS	28358670	28358979	.	-	1	Parent=Os03t0705300-02
Chr03	irgsp1_rep	three_prime_UTR	28358120	28358669	.	-	.	Parent=Os03t0705300-02
Chr03	irgsp1_rep	mRNA	28372478	28372819	.	+	.	ID=Os03t0705433-00;Name=Os03t0705433-00;Locus_id=Os03g0705433;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001173605.1 (RefSeq);TENOR=Os03t0705433-00
Chr03	irgsp1_rep	CDS	28372478	28372819	.	+	0	Parent=Os03t0705433-00
Chr03	irgsp1_rep	mRNA	28365491	28366251	.	-	.	ID=Os03t0705550-00;Name=Os03t0705550-00;Locus_id=Os03g0705550;Note=Hypothetical gene.;Transcript_evidence=CT837887 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os03t0705550-00;KEGG=Os03t0705550-00
Chr03	irgsp1_rep	five_prime_UTR	28366221	28366251	.	-	.	Parent=Os03t0705550-00
Chr03	irgsp1_rep	CDS	28365936	28366220	.	-	0	Parent=Os03t0705550-00
Chr03	irgsp1_rep	three_prime_UTR	28365491	28365935	.	-	.	Parent=Os03t0705550-00
Chr03	irgsp1_rep	mRNA	28390417	28391991	.	+	.	ID=Os03t0705800-00;Name=Os03t0705800-00;Locus_id=Os03g0705800;Note=Protein of unknown function DUF3049 domain containing protein.;Transcript_evidence=AK376291 (DDBJ);ORF_evidence=NP_001051027.2 (RefSeq);InterPro=Protein of unknown function DUF3049 (IPR021410);TENOR=Os03t0705800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	28390417	28390447	.	+	.	Parent=Os03t0705800-00
Chr03	irgsp1_rep	CDS	28390448	28391752	.	+	0	Parent=Os03t0705800-00
Chr03	irgsp1_rep	three_prime_UTR	28391753	28391991	.	+	.	Parent=Os03t0705800-00
Chr03	irgsp1_rep	mRNA	28428504	28430438	.	+	.	ID=Os03t0706500-01;Name=Os03t0706500-01;Locus_id=Os03g0706500;RAP-DB Gene Symbol Synonym(s)=FC1%2C fc1%2C OsTB1%2C tb1%2C OsTB1/FC1%2C Os TB1%2C TB1;RAP-DB Gene Name Synonym(s)=FINE CULM 1%2C fine culm1%2C fine culm 1%2C fine culm-1%2C lateral branching-1(t)%2C teosinte-branching 1%2C Fine culm 1%2C teosinte branched1 protein%2C teosinte branched 1 protein%2C transcription factor OsTB1%2C teosinte branched1%2C FINE CULM1;CGSNL Gene Symbol=FC1;CGSNL Gene Name=FINE CULM 1;Oryzabase Gene Symbol Synonym(s)=fc1%2C OsTB1%2C tb1%2C OsTB1/FC1%2C Os TB1%2C TB1%2C OsFC1;Oryzabase Gene Name Synonym(s)=fine culm1%2C fine culm 1%2C fine culm-1%2C lateral branching-1(t)%2C teosinte-branching 1%2C Fine culm 1%2C teosinte branched1 protein%2C teosinte branched 1 protein%2C transcription factor OsTB1%2C teosinte branched1%2C FINE CULM1;Note=TCP family transcription factor%2C Negative regulator for lateral branching;Transcript_evidence=AK107083 (Genbank);ORF_evidence=Q8LN68 (UniProt);InterPro=Transcription factor%2C TCP (IPR005333),Transcription factor TCP subgroup (IPR017887),CYC/TB1%2C R domain (IPR017888);NIAS_FLcDNA=002-121-G01;Manual Curation=September 7%2C 2009;Literature_PMID=12581309;Oryzabase=565;Expression=AK107083;TENOR=Os03t0706500-01;KEGG=Os03t0706500-01
Chr03	irgsp1_rep	five_prime_UTR	28428504	28429008	.	+	.	Parent=Os03t0706500-01
Chr03	irgsp1_rep	CDS	28429009	28430175	.	+	0	Parent=Os03t0706500-01
Chr03	irgsp1_rep	three_prime_UTR	28430176	28430438	.	+	.	Parent=Os03t0706500-01
Chr03	irgsp1_rep	mRNA	28428797	28430171	.	-	.	ID=Os03t0706650-00;Name=Os03t0706650-00;Locus_id=Os03g0706650;Note=Hypothetical protein.;Transcript_evidence=tplb0055g09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0706650-00
Chr03	irgsp1_rep	five_prime_UTR	28430034	28430171	.	-	.	Parent=Os03t0706650-00
Chr03	irgsp1_rep	five_prime_UTR	28429530	28429976	.	-	.	Parent=Os03t0706650-00
Chr03	irgsp1_rep	CDS	28429128	28429529	.	-	0	Parent=Os03t0706650-00
Chr03	irgsp1_rep	three_prime_UTR	28428797	28429127	.	-	.	Parent=Os03t0706650-00
Chr03	irgsp1_rep	mRNA	28448846	28456395	.	-	.	ID=Os03t0706900-01;Name=Os03t0706900-01;Locus_id=Os03g0706900;RAP-DB Gene Symbol Synonym(s)=LE;RAP-DB Gene Name Synonym(s)=LARGE EMBRYO;CGSNL Gene Symbol=LE;CGSNL Gene Name=LARGE EMBRYO;Oryzabase Gene Symbol Synonym(s)=OsRHC1%2C RHC1%2C OsLE;Oryzabase Gene Name Synonym(s)=RING-HC protein 1%2C large embryo;Note=C3HC4-type RING finger protein%2C Controll of embryo size;Transcript_evidence=AK065293;ORF_evidence=Q10E70;InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Transmembrane Fragile-X-F-associated protein (IPR019396),Zinc finger%2C RING-type (IPR001841);NIAS_FLcDNA=J013002N07;Manual Curation=April 11%2C 2019;Literature_PMID=30972509;Oryzabase=14260;Expression=AK065293;TENOR=Os03t0706900-01;KEGG=Os03t0706900-01
Chr03	irgsp1_rep	five_prime_UTR	28456177	28456395	.	-	.	Parent=Os03t0706900-01
Chr03	irgsp1_rep	CDS	28456043	28456176	.	-	0	Parent=Os03t0706900-01
Chr03	irgsp1_rep	CDS	28455396	28455486	.	-	1	Parent=Os03t0706900-01
Chr03	irgsp1_rep	CDS	28455228	28455312	.	-	0	Parent=Os03t0706900-01
Chr03	irgsp1_rep	CDS	28455045	28455129	.	-	2	Parent=Os03t0706900-01
Chr03	irgsp1_rep	CDS	28453352	28453421	.	-	1	Parent=Os03t0706900-01
Chr03	irgsp1_rep	CDS	28452561	28452630	.	-	0	Parent=Os03t0706900-01
Chr03	irgsp1_rep	CDS	28451294	28451339	.	-	2	Parent=Os03t0706900-01
Chr03	irgsp1_rep	CDS	28450965	28451214	.	-	1	Parent=Os03t0706900-01
Chr03	irgsp1_rep	CDS	28450481	28450686	.	-	0	Parent=Os03t0706900-01
Chr03	irgsp1_rep	CDS	28450327	28450401	.	-	1	Parent=Os03t0706900-01
Chr03	irgsp1_rep	CDS	28450102	28450171	.	-	1	Parent=Os03t0706900-01
Chr03	irgsp1_rep	CDS	28449920	28450000	.	-	0	Parent=Os03t0706900-01
Chr03	irgsp1_rep	CDS	28449393	28449472	.	-	0	Parent=Os03t0706900-01
Chr03	irgsp1_rep	CDS	28449227	28449305	.	-	1	Parent=Os03t0706900-01
Chr03	irgsp1_rep	three_prime_UTR	28448846	28449226	.	-	.	Parent=Os03t0706900-01
Chr03	irgsp1_rep	mRNA	28470836	28472865	.	+	.	ID=Os03t0707200-00;Name=Os03t0707200-00;Locus_id=Os03g0707200;Note=Similar to Integral membrane protein DUF6 containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10E65 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);TENOR=Os03t0707200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	28470836	28471208	.	+	0	Parent=Os03t0707200-00
Chr03	irgsp1_rep	CDS	28471330	28471571	.	+	2	Parent=Os03t0707200-00
Chr03	irgsp1_rep	CDS	28471676	28471798	.	+	0	Parent=Os03t0707200-00
Chr03	irgsp1_rep	CDS	28472112	28472228	.	+	0	Parent=Os03t0707200-00
Chr03	irgsp1_rep	CDS	28472344	28472526	.	+	0	Parent=Os03t0707200-00
Chr03	irgsp1_rep	CDS	28472622	28472763	.	+	0	Parent=Os03t0707200-00
Chr03	irgsp1_rep	CDS	28472816	28472865	.	+	2	Parent=Os03t0707200-00
Chr03	irgsp1_rep	mRNA	28473276	28473643	.	+	.	ID=Os03t0707250-01;Name=Os03t0707250-01;Locus_id=Os03g0707250;Note=Non-protein coding transcript.;Transcript_evidence=AK242476 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080303L15;TENOR=Os03t0707250-01
Chr03	irgsp1_rep	exon	28473276	28473643	.	+	.	Parent=Os03t0707250-01
Chr03	irgsp1_rep	mRNA	28474312	28483670	.	-	.	ID=Os03t0707300-01;Name=Os03t0707300-01;Locus_id=Os03g0707300;Note=Conserved hypothetical protein.;Transcript_evidence=AK066944 (DDBJ%2C Best hit);ORF_evidence=Q10E63 (UniProt);NIAS_FLcDNA=J013089H23;Expression=AK066944;TENOR=Os03t0707300-01;KEGG=Os03t0707300-01
Chr03	irgsp1_rep	five_prime_UTR	28483351	28483670	.	-	.	Parent=Os03t0707300-01
Chr03	irgsp1_rep	five_prime_UTR	28482886	28482894	.	-	.	Parent=Os03t0707300-01
Chr03	irgsp1_rep	CDS	28482728	28482885	.	-	0	Parent=Os03t0707300-01
Chr03	irgsp1_rep	CDS	28482545	28482626	.	-	1	Parent=Os03t0707300-01
Chr03	irgsp1_rep	CDS	28482378	28482455	.	-	0	Parent=Os03t0707300-01
Chr03	irgsp1_rep	CDS	28482206	28482265	.	-	0	Parent=Os03t0707300-01
Chr03	irgsp1_rep	CDS	28482012	28482116	.	-	0	Parent=Os03t0707300-01
Chr03	irgsp1_rep	CDS	28481002	28481112	.	-	0	Parent=Os03t0707300-01
Chr03	irgsp1_rep	CDS	28480329	28480370	.	-	0	Parent=Os03t0707300-01
Chr03	irgsp1_rep	CDS	28479241	28479342	.	-	0	Parent=Os03t0707300-01
Chr03	irgsp1_rep	CDS	28479079	28479167	.	-	0	Parent=Os03t0707300-01
Chr03	irgsp1_rep	CDS	28478845	28478960	.	-	1	Parent=Os03t0707300-01
Chr03	irgsp1_rep	CDS	28478656	28478768	.	-	2	Parent=Os03t0707300-01
Chr03	irgsp1_rep	CDS	28478506	28478548	.	-	0	Parent=Os03t0707300-01
Chr03	irgsp1_rep	CDS	28478326	28478417	.	-	2	Parent=Os03t0707300-01
Chr03	irgsp1_rep	CDS	28477396	28477444	.	-	0	Parent=Os03t0707300-01
Chr03	irgsp1_rep	CDS	28475555	28475625	.	-	2	Parent=Os03t0707300-01
Chr03	irgsp1_rep	CDS	28475137	28475250	.	-	0	Parent=Os03t0707300-01
Chr03	irgsp1_rep	CDS	28474898	28475013	.	-	0	Parent=Os03t0707300-01
Chr03	irgsp1_rep	CDS	28474746	28474791	.	-	1	Parent=Os03t0707300-01
Chr03	irgsp1_rep	CDS	28474627	28474659	.	-	0	Parent=Os03t0707300-01
Chr03	irgsp1_rep	three_prime_UTR	28474312	28474626	.	-	.	Parent=Os03t0707300-01
Chr03	irgsp1_rep	mRNA	28512754	28515086	.	+	.	ID=Os03t0707600-01;Name=Os03t0707600-01;Locus_id=Os03g0707600;RAP-DB Gene Symbol Synonym(s)=SLR1%2C slr1-1%2C slr1%2C slr%2C GAI%2C OsGAI%2C OsSLR1%2C Os SLR1;RAP-DB Gene Name Synonym(s)=SLENDER RICE1%2C slender rice1-1%2C slender rice%2C Giberellin-insensitive gene homolog%2C DELLA protein SLR1%2C Protein SLENDER RICE1%2C Gibberellic acid-insensitive mutant protein%2C Slender Rice 1%2C SLENDER 1%2C SLENDER1;CGSNL Gene Symbol=SLR1;CGSNL Gene Name=SLENDER RICE1;Oryzabase Gene Symbol Synonym(s)=slr1-1%2C slr1%2C slr%2C GAI%2C OsGAI%2C OsSLR1%2C Os SLR1%2C OsRGA1%2C OsGRAS-18%2C OsGRAS-18%2C GRAS-18%2C GRAS18;Oryzabase Gene Name Synonym(s)=slender rice1-1%2C slender rice%2C Giberellin-insensitive gene homolog%2C DELLA protein SLR1%2C Protein SLENDER RICE1%2C Gibberellic acid-insensitive mutant protein%2C Slender Rice 1%2C SLENDER 1%2C SLENDER1%2C GRAS protein 18;Note=DELLA repressor protein%2C Gibberellin signaling;Transcript_evidence=AB262980;ORF_evidence=Q7G7J6;GO=Molecular Function: transcription factor binding transcription factor activity (GO:0000989),Cellular Component: nucleus (GO:0005634);InterPro=Transcriptional factor DELLA (IPR030006),Transcriptional factor DELLA%2C N-terminal (IPR021914),Transcription factor GRAS (IPR005202);Manual Curation=October 16%2C 2018;Literature_PMID=17644730,11826299,11340177;Oryzabase=2097;TENOR=Os03t0707600-01
Chr03	irgsp1_rep	five_prime_UTR	28512754	28512870	.	+	.	Parent=Os03t0707600-01
Chr03	irgsp1_rep	CDS	28512871	28514748	.	+	0	Parent=Os03t0707600-01
Chr03	irgsp1_rep	three_prime_UTR	28514749	28515086	.	+	.	Parent=Os03t0707600-01
Chr03	irgsp1_rep	mRNA	28533104	28541241	.	-	.	ID=Os03t0707900-01;Name=Os03t0707900-01;Locus_id=Os03g0707900;Note=Similar to Toc64.;Transcript_evidence=AK067052 (DDBJ%2C Best hit),AK098901 (DDBJ%2C Best hit);ORF_evidence=B6UCR6 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515),Molecular Function: carbon-nitrogen ligase activity%2C with glutamine as amido-N-donor (GO:0016884);InterPro=Amidase (IPR000120),Tetratricopeptide TPR-1 (IPR001440),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734),Amidase signature domain (IPR023631);NIAS_FLcDNA=J013091C21,J013002B22;Expression=AK067052;TENOR=Os03t0707900-01;KEGG=Os03t0707900-01
Chr03	irgsp1_rep	five_prime_UTR	28541078	28541241	.	-	.	Parent=Os03t0707900-01
Chr03	irgsp1_rep	CDS	28540872	28541077	.	-	0	Parent=Os03t0707900-01
Chr03	irgsp1_rep	CDS	28538994	28539146	.	-	1	Parent=Os03t0707900-01
Chr03	irgsp1_rep	CDS	28538695	28538819	.	-	1	Parent=Os03t0707900-01
Chr03	irgsp1_rep	CDS	28537987	28538112	.	-	2	Parent=Os03t0707900-01
Chr03	irgsp1_rep	CDS	28537675	28537857	.	-	2	Parent=Os03t0707900-01
Chr03	irgsp1_rep	CDS	28537429	28537567	.	-	2	Parent=Os03t0707900-01
Chr03	irgsp1_rep	CDS	28536721	28536880	.	-	1	Parent=Os03t0707900-01
Chr03	irgsp1_rep	CDS	28535788	28535922	.	-	0	Parent=Os03t0707900-01
Chr03	irgsp1_rep	CDS	28534888	28535088	.	-	0	Parent=Os03t0707900-01
Chr03	irgsp1_rep	CDS	28534276	28534403	.	-	0	Parent=Os03t0707900-01
Chr03	irgsp1_rep	CDS	28534103	28534154	.	-	1	Parent=Os03t0707900-01
Chr03	irgsp1_rep	CDS	28533667	28533736	.	-	0	Parent=Os03t0707900-01
Chr03	irgsp1_rep	CDS	28533442	28533524	.	-	2	Parent=Os03t0707900-01
Chr03	irgsp1_rep	three_prime_UTR	28533104	28533441	.	-	.	Parent=Os03t0707900-01
Chr03	irgsp1_rep	mRNA	28548351	28549923	.	+	.	ID=Os03t0708000-01;Name=Os03t0708000-01;Locus_id=Os03g0708000;CGSNL Gene Symbol=PLA2;CGSNL Gene Name=PHOSPHOLIPASE A2;Oryzabase Gene Symbol Synonym(s)=OsPLA2;Oryzabase Gene Name Synonym(s)=phospholipase A2;Note=Phospholipase A2 family protein.;Transcript_evidence=AK105828 (DDBJ%2C Best hit);ORF_evidence=Q10E50 (UniProt);GO=Biological Process: phospholipid metabolic process (GO:0006644),Biological Process: lipid catabolic process (GO:0016042),Molecular Function: phospholipase A2 activity (GO:0004623),Molecular Function: calcium ion binding (GO:0005509);InterPro=Phospholipase A2%2C eukaryotic (IPR001211),Phospholipase A2%2C active site (IPR013090),Phospholipase A2 (IPR016090);NIAS_FLcDNA=001-203-E04;Oryzabase=23621;Expression=AK105828;TENOR=Os03t0708000-01;KEGG=Os03t0708000-01 (EC:3.1.1.4)
Chr03	irgsp1_rep	five_prime_UTR	28548351	28548724	.	+	.	Parent=Os03t0708000-01
Chr03	irgsp1_rep	CDS	28548725	28548871	.	+	0	Parent=Os03t0708000-01
Chr03	irgsp1_rep	CDS	28548981	28549029	.	+	0	Parent=Os03t0708000-01
Chr03	irgsp1_rep	CDS	28549124	28549246	.	+	2	Parent=Os03t0708000-01
Chr03	irgsp1_rep	CDS	28549364	28549536	.	+	2	Parent=Os03t0708000-01
Chr03	irgsp1_rep	three_prime_UTR	28549537	28549923	.	+	.	Parent=Os03t0708000-01
Chr03	irgsp1_rep	mRNA	28551955	28555381	.	-	.	ID=Os03t0708100-01;Name=Os03t0708100-01;Locus_id=Os03g0708100;Oryzabase Gene Symbol Synonym(s)=OMT7;Oryzabase Gene Name Synonym(s)=Oryza miR164-targeted gene 7;Note=Phytanoyl-CoA dioxygenase family protein.;Transcript_evidence=AK103821 (DDBJ%2C Best hit);ORF_evidence=NP_565262.1 (RefSeq);InterPro=Phytanoyl-CoA dioxygenase (IPR008775);NIAS_FLcDNA=J033147H12;Oryzabase=15821;Expression=AK103821;TENOR=Os03t0708100-01;KEGG=Os03t0708100-01
Chr03	irgsp1_rep	five_prime_UTR	28555319	28555381	.	-	.	Parent=Os03t0708100-01
Chr03	irgsp1_rep	CDS	28555264	28555318	.	-	0	Parent=Os03t0708100-01
Chr03	irgsp1_rep	CDS	28554980	28555098	.	-	2	Parent=Os03t0708100-01
Chr03	irgsp1_rep	CDS	28554752	28554812	.	-	0	Parent=Os03t0708100-01
Chr03	irgsp1_rep	CDS	28554437	28554505	.	-	2	Parent=Os03t0708100-01
Chr03	irgsp1_rep	CDS	28553712	28553830	.	-	2	Parent=Os03t0708100-01
Chr03	irgsp1_rep	CDS	28553483	28553630	.	-	0	Parent=Os03t0708100-01
Chr03	irgsp1_rep	CDS	28553245	28553389	.	-	2	Parent=Os03t0708100-01
Chr03	irgsp1_rep	CDS	28553076	28553162	.	-	1	Parent=Os03t0708100-01
Chr03	irgsp1_rep	CDS	28552274	28552316	.	-	1	Parent=Os03t0708100-01
Chr03	irgsp1_rep	three_prime_UTR	28551955	28552273	.	-	.	Parent=Os03t0708100-01
Chr03	irgsp1_rep	mRNA	28552065	28555357	.	-	.	ID=Os03t0708100-02;Name=Os03t0708100-02;Locus_id=Os03g0708100;Oryzabase Gene Symbol Synonym(s)=OMT7;Oryzabase Gene Name Synonym(s)=Oryza miR164-targeted gene 7;Note=Similar to phytanoyl-CoA dioxygenase (PhyH) family protein.;Transcript_evidence=AK104750 (DDBJ%2C Best hit),AK060138 (DDBJ%2C Best hit);ORF_evidence=NP_565262.1 (RefSeq);InterPro=Phytanoyl-CoA dioxygenase (IPR008775);NIAS_FLcDNA=001-038-F05,006-309-E10;Oryzabase=15821;TENOR=Os03t0708100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	28555319	28555357	.	-	.	Parent=Os03t0708100-02
Chr03	irgsp1_rep	CDS	28555264	28555318	.	-	0	Parent=Os03t0708100-02
Chr03	irgsp1_rep	CDS	28554980	28555098	.	-	2	Parent=Os03t0708100-02
Chr03	irgsp1_rep	CDS	28554752	28554812	.	-	0	Parent=Os03t0708100-02
Chr03	irgsp1_rep	CDS	28554437	28554505	.	-	2	Parent=Os03t0708100-02
Chr03	irgsp1_rep	CDS	28553712	28553830	.	-	2	Parent=Os03t0708100-02
Chr03	irgsp1_rep	CDS	28553483	28553623	.	-	0	Parent=Os03t0708100-02
Chr03	irgsp1_rep	CDS	28553381	28553389	.	-	0	Parent=Os03t0708100-02
Chr03	irgsp1_rep	three_prime_UTR	28553245	28553380	.	-	.	Parent=Os03t0708100-02
Chr03	irgsp1_rep	three_prime_UTR	28553076	28553162	.	-	.	Parent=Os03t0708100-02
Chr03	irgsp1_rep	three_prime_UTR	28552065	28552316	.	-	.	Parent=Os03t0708100-02
Chr03	irgsp1_rep	mRNA	28556750	28558335	.	+	.	ID=Os03t0708200-01;Name=Os03t0708200-01;Locus_id=Os03g0708200;Oryzabase Gene Symbol Synonym(s)=OsFbox169%2C Os_F0378;Oryzabase Gene Name Synonym(s)=F-box protein 169;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK287707 (DDBJ%2C Best hit);ORF_evidence=NP_001173607.1 (RefSeq);InterPro=Protein of unknown function DUF295 (IPR005174),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J065132B15;Oryzabase=16958;TENOR=Os03t0708200-01;KEGG=Os03t0708200-01
Chr03	irgsp1_rep	five_prime_UTR	28556750	28556839	.	+	.	Parent=Os03t0708200-01
Chr03	irgsp1_rep	CDS	28556840	28558036	.	+	0	Parent=Os03t0708200-01
Chr03	irgsp1_rep	three_prime_UTR	28558037	28558335	.	+	.	Parent=Os03t0708200-01
Chr03	irgsp1_rep	mRNA	28559564	28560214	.	-	.	ID=Os03t0708250-00;Name=Os03t0708250-00;Locus_id=Os03g0708250;Note=Conserved hypothetical protein.;Transcript_evidence=CT837770 (DDBJ%2C Best hit);ORF_evidence=NP_001173938.1 (RefSeq);TENOR=Os03t0708250-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	28559715	28560214	.	-	.	Parent=Os03t0708250-00
Chr03	irgsp1_rep	CDS	28559564	28559714	.	-	0	Parent=Os03t0708250-00
Chr03	irgsp1_rep	mRNA	28561107	28564805	.	+	.	ID=Os03t0708400-01;Name=Os03t0708400-01;Locus_id=Os03g0708400;Note=Protein of unknown function DUF1295 family protein.;Transcript_evidence=AK066216 (DDBJ%2C Best hit);ORF_evidence=NP_565068.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Cellular Component: cytoplasm (GO:0005737),Cellular Component: integral to membrane (GO:0016021),Molecular Function: oxidoreductase activity%2C acting on the CH-CH group of donors (GO:0016627);InterPro=3-oxo-5-alpha-steroid 4-dehydrogenase%2C C-terminal (IPR001104),Protein of unknown function DUF1295 (IPR010721);NIAS_FLcDNA=J013052J02;Expression=AK066216;TENOR=Os03t0708400-01;KEGG=Os03t0708400-01
Chr03	irgsp1_rep	five_prime_UTR	28561107	28561189	.	+	.	Parent=Os03t0708400-01
Chr03	irgsp1_rep	CDS	28561190	28561240	.	+	0	Parent=Os03t0708400-01
Chr03	irgsp1_rep	CDS	28561387	28561456	.	+	0	Parent=Os03t0708400-01
Chr03	irgsp1_rep	CDS	28561592	28561659	.	+	2	Parent=Os03t0708400-01
Chr03	irgsp1_rep	CDS	28562362	28562423	.	+	0	Parent=Os03t0708400-01
Chr03	irgsp1_rep	CDS	28563096	28563177	.	+	1	Parent=Os03t0708400-01
Chr03	irgsp1_rep	CDS	28563263	28563496	.	+	0	Parent=Os03t0708400-01
Chr03	irgsp1_rep	CDS	28563815	28563943	.	+	0	Parent=Os03t0708400-01
Chr03	irgsp1_rep	CDS	28564035	28564096	.	+	0	Parent=Os03t0708400-01
Chr03	irgsp1_rep	CDS	28564384	28564501	.	+	1	Parent=Os03t0708400-01
Chr03	irgsp1_rep	three_prime_UTR	28564502	28564805	.	+	.	Parent=Os03t0708400-01
Chr03	irgsp1_rep	mRNA	28565482	28566757	.	-	.	ID=Os03t0708500-00;Name=Os03t0708500-00;Locus_id=Os03g0708500;Oryzabase Gene Symbol Synonym(s)=OsFKBP17-2;Oryzabase Gene Name Synonym(s)=FK506 binding protein 17-2;Note=Capsid/spike protein%2C ssDNA virus domain containing protein.;Transcript_evidence=CT835099 (DDBJ%2C Best hit);ORF_evidence=NP_001150378.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457);InterPro=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type%2C domain (IPR001179),Capsid/spike protein%2C ssDNA virus (IPR016184),Peptidyl-prolyl cis-trans isomerase%2C FKBP-type (IPR023566);Oryzabase=10033;TENOR=Os03t0708500-00;KEGG=Os03t0708500-00
Chr03	irgsp1_rep	five_prime_UTR	28566691	28566757	.	-	.	Parent=Os03t0708500-00
Chr03	irgsp1_rep	CDS	28566332	28566690	.	-	0	Parent=Os03t0708500-00
Chr03	irgsp1_rep	CDS	28566190	28566234	.	-	1	Parent=Os03t0708500-00
Chr03	irgsp1_rep	CDS	28565751	28566105	.	-	1	Parent=Os03t0708500-00
Chr03	irgsp1_rep	three_prime_UTR	28565482	28565750	.	-	.	Parent=Os03t0708500-00
Chr03	irgsp1_rep	mRNA	28568746	28571308	.	-	.	ID=Os03t0708600-01;Name=Os03t0708600-01;Locus_id=Os03g0708600;Oryzabase Gene Symbol Synonym(s)=OsRH21;Oryzabase Gene Name Synonym(s)=RNA helicase 21;Note=DEAD-like helicase%2C N-terminal domain containing protein.;Transcript_evidence=AK069658 (DDBJ%2C Best hit);ORF_evidence=B7EG14 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=RNA helicase%2C ATP-dependent%2C DEAD-box%2C conserved site (IPR000629),Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=J023030D22;Oryzabase=19136;Expression=AK069658;TENOR=Os03t0708600-01;KEGG=Os03t0708600-01 (EC:3.6.4.13)
Chr03	irgsp1_rep	five_prime_UTR	28571246	28571308	.	-	.	Parent=Os03t0708600-01
Chr03	irgsp1_rep	CDS	28569035	28571245	.	-	0	Parent=Os03t0708600-01
Chr03	irgsp1_rep	three_prime_UTR	28568746	28569034	.	-	.	Parent=Os03t0708600-01
Chr03	irgsp1_rep	mRNA	28568347	28571307	.	-	.	ID=Os03t0708600-02;Name=Os03t0708600-02;Locus_id=Os03g0708600;Oryzabase Gene Symbol Synonym(s)=OsRH21;Oryzabase Gene Name Synonym(s)=RNA helicase 21;Note=DEAD-like helicase%2C N-terminal domain containing protein.;Transcript_evidence=AK069199 (DDBJ%2C Best hit);ORF_evidence=NP_001152536.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=RNA helicase%2C ATP-dependent%2C DEAD-box%2C conserved site (IPR000629),Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=J023008E04;Oryzabase=19136;Expression=AK069199;TENOR=Os03t0708600-02;KEGG=Os03t0708600-02 (EC:3.6.4.13)
Chr03	irgsp1_rep	five_prime_UTR	28571246	28571307	.	-	.	Parent=Os03t0708600-02
Chr03	irgsp1_rep	CDS	28569035	28571245	.	-	0	Parent=Os03t0708600-02
Chr03	irgsp1_rep	three_prime_UTR	28568944	28569034	.	-	.	Parent=Os03t0708600-02
Chr03	irgsp1_rep	three_prime_UTR	28568347	28568686	.	-	.	Parent=Os03t0708600-02
Chr03	irgsp1_rep	mRNA	28572774	28575246	.	-	.	ID=Os03t0708700-00;Name=Os03t0708700-00;Locus_id=Os03g0708700;Note=Protein of unknown function DUF593 domain containing protein.;Transcript_evidence=EU940948 (DDBJ);ORF_evidence=NP_001051039.2 (RefSeq);InterPro=Protein of unknown function DUF593 (IPR007656);TENOR=Os03t0708700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	28575033	28575246	.	-	.	Parent=Os03t0708700-00
Chr03	irgsp1_rep	CDS	28575026	28575032	.	-	0	Parent=Os03t0708700-00
Chr03	irgsp1_rep	CDS	28573639	28574945	.	-	2	Parent=Os03t0708700-00
Chr03	irgsp1_rep	three_prime_UTR	28573637	28573638	.	-	.	Parent=Os03t0708700-00
Chr03	irgsp1_rep	three_prime_UTR	28572774	28573348	.	-	.	Parent=Os03t0708700-00
Chr03	irgsp1_rep	mRNA	28583168	28585973	.	+	.	ID=Os03t0708750-01;Name=Os03t0708750-01;Locus_id=Os03g0708750;Note=Hypothetical gene.;Transcript_evidence=AK288565 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090047P07;TENOR=Os03t0708750-01;KEGG=Os03t0708750-01
Chr03	irgsp1_rep	five_prime_UTR	28583168	28585693	.	+	.	Parent=Os03t0708750-01
Chr03	irgsp1_rep	CDS	28585694	28585972	.	+	0	Parent=Os03t0708750-01
Chr03	irgsp1_rep	three_prime_UTR	28585973	28585973	.	+	.	Parent=Os03t0708750-01
Chr03	irgsp1_rep	mRNA	28585263	28586711	.	-	.	ID=Os03t0708800-01;Name=Os03t0708800-01;Locus_id=Os03g0708800;CGSNL Gene Symbol=DLN97;CGSNL Gene Name=DLN REPRESSOR 97;Oryzabase Gene Symbol Synonym(s)=OsDLN97;Oryzabase Gene Name Synonym(s)=DLN repressor 97%2C DLN motif protein 97;Note=Hypothetical conserved gene.;Transcript_evidence=AK121625 (DDBJ%2C Best hit);ORF_evidence=F1DK22 (UniProt);InterPro=Protein of unknown function DUF573 (IPR007592);NIAS_FLcDNA=J033046H08;Oryzabase=23187;Expression=AK121625;TENOR=Os03t0708800-01;KEGG=Os03t0708800-01
Chr03	irgsp1_rep	five_prime_UTR	28586624	28586711	.	-	.	Parent=Os03t0708800-01
Chr03	irgsp1_rep	CDS	28585496	28586623	.	-	0	Parent=Os03t0708800-01
Chr03	irgsp1_rep	three_prime_UTR	28585263	28585495	.	-	.	Parent=Os03t0708800-01
Chr03	irgsp1_rep	mRNA	28585243	28586646	.	-	.	ID=Os03t0708800-02;Name=Os03t0708800-02;Locus_id=Os03g0708800;CGSNL Gene Symbol=DLN97;CGSNL Gene Name=DLN REPRESSOR 97;Oryzabase Gene Symbol Synonym(s)=OsDLN97;Oryzabase Gene Name Synonym(s)=DLN repressor 97%2C DLN motif protein 97;Note=Similar to GEBP transcription factor (Fragment).;Transcript_evidence=AK063654 (DDBJ%2C Best hit);ORF_evidence=F1DK22 (UniProt);NIAS_FLcDNA=001-119-B05;Oryzabase=23187;TENOR=Os03t0708800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	28586496	28586646	.	-	.	Parent=Os03t0708800-02
Chr03	irgsp1_rep	five_prime_UTR	28585988	28586011	.	-	.	Parent=Os03t0708800-02
Chr03	irgsp1_rep	CDS	28585538	28585987	.	-	0	Parent=Os03t0708800-02
Chr03	irgsp1_rep	CDS	28585400	28585489	.	-	0	Parent=Os03t0708800-02
Chr03	irgsp1_rep	three_prime_UTR	28585243	28585399	.	-	.	Parent=Os03t0708800-02
Chr03	irgsp1_rep	mRNA	28585264	28586241	.	-	.	ID=Os03t0708800-03;Name=Os03t0708800-03;Locus_id=Os03g0708800;CGSNL Gene Symbol=DLN97;CGSNL Gene Name=DLN REPRESSOR 97;Oryzabase Gene Symbol Synonym(s)=OsDLN97;Oryzabase Gene Name Synonym(s)=DLN repressor 97%2C DLN motif protein 97;Note=Hypothetical conserved gene.;Transcript_evidence=AK063141 (DDBJ%2C Best hit);ORF_evidence=F1DK22 (UniProt);InterPro=Protein of unknown function DUF573 (IPR007592);NIAS_FLcDNA=001-111-G09;Oryzabase=23187;Expression=AK063141;TENOR=Os03t0708800-03;KEGG=Os03t0708800-03
Chr03	irgsp1_rep	five_prime_UTR	28586240	28586241	.	-	.	Parent=Os03t0708800-03
Chr03	irgsp1_rep	CDS	28585496	28586239	.	-	0	Parent=Os03t0708800-03
Chr03	irgsp1_rep	three_prime_UTR	28585264	28585495	.	-	.	Parent=Os03t0708800-03
Chr03	irgsp1_rep	mRNA	28588615	28593641	.	+	.	ID=Os03t0708900-01;Name=Os03t0708900-01;Locus_id=Os03g0708900;Note=Zinc finger%2C RanBP2-type domain containing protein.;Transcript_evidence=AK073541 (DDBJ%2C Best hit);ORF_evidence=B8AQC1 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RanBP2-type (IPR001876);NIAS_FLcDNA=J033043D13;Expression=AK073541;TENOR=Os03t0708900-01;KEGG=Os03t0708900-01
Chr03	irgsp1_rep	five_prime_UTR	28588615	28588670	.	+	.	Parent=Os03t0708900-01
Chr03	irgsp1_rep	CDS	28588671	28589083	.	+	0	Parent=Os03t0708900-01
Chr03	irgsp1_rep	CDS	28589655	28589772	.	+	1	Parent=Os03t0708900-01
Chr03	irgsp1_rep	CDS	28589970	28590331	.	+	0	Parent=Os03t0708900-01
Chr03	irgsp1_rep	CDS	28592710	28592826	.	+	1	Parent=Os03t0708900-01
Chr03	irgsp1_rep	CDS	28592913	28593011	.	+	1	Parent=Os03t0708900-01
Chr03	irgsp1_rep	CDS	28593090	28593495	.	+	1	Parent=Os03t0708900-01
Chr03	irgsp1_rep	three_prime_UTR	28593496	28593641	.	+	.	Parent=Os03t0708900-01
Chr03	irgsp1_rep	mRNA	28594360	28596338	.	-	.	ID=Os03t0709000-01;Name=Os03t0709000-01;Locus_id=Os03g0709000;Note=Membrane-associated%2C eicosanoid and glutathione metabolism (MAPEG) domain containing protein.;Transcript_evidence=AK062406 (DDBJ%2C Best hit);ORF_evidence=B4FLH3 (UniProt);InterPro=Membrane-associated%2C eicosanoid/glutathione metabolism (MAPEG) protein (IPR001129),Membrane associated eicosanoid/glutathione metabolism-like domain (IPR023352);NIAS_FLcDNA=001-102-E08;Expression=AK062406;TENOR=Os03t0709000-01;KEGG=Os03t0709000-01 (EC:2.5.1.18)
Chr03	irgsp1_rep	five_prime_UTR	28596232	28596338	.	-	.	Parent=Os03t0709000-01
Chr03	irgsp1_rep	CDS	28596119	28596231	.	-	0	Parent=Os03t0709000-01
Chr03	irgsp1_rep	CDS	28595930	28596005	.	-	1	Parent=Os03t0709000-01
Chr03	irgsp1_rep	CDS	28595671	28595843	.	-	0	Parent=Os03t0709000-01
Chr03	irgsp1_rep	CDS	28594732	28594816	.	-	1	Parent=Os03t0709000-01
Chr03	irgsp1_rep	three_prime_UTR	28594360	28594731	.	-	.	Parent=Os03t0709000-01
Chr03	irgsp1_rep	mRNA	28598319	28599121	.	-	.	ID=Os03t0709100-01;Name=Os03t0709100-01;Locus_id=Os03g0709100;RAP-DB Gene Symbol Synonym(s)=OsUCL8;RAP-DB Gene Name Synonym(s)=UCLACYANIN-LIKE PROTEIN 8;CGSNL Gene Symbol=UCL8;CGSNL Gene Name=UCLACYANIN-LIKE PROTEIN 8;Oryzabase Gene Symbol Synonym(s)=OsUCL8;Oryzabase Gene Name Synonym(s)=uclacyanin-like protein 8%2C uclacyanin 8;Note=Uclacyanin (UCL)%2C Phytocyanin family protein%2C Regulation of photosynthesis and grain yield;Transcript_evidence=AK061596;ORF_evidence=Q53RK4;GO=Molecular Function: electron carrier activity (GO:0009055);InterPro=Cupredoxin (IPR008972),Phytocyanin domain (IPR003245);NIAS_FLcDNA=001-024-C04;Manual Curation=November 9%2C 2017;Literature_PMID=28904074;Oryzabase=9757;Expression=AK061596;TENOR=Os03t0709100-01;KEGG=Os03t0709100-01;Subcellular location=cytoplasm (GO:0005737)
Chr03	irgsp1_rep	five_prime_UTR	28598967	28599121	.	-	.	Parent=Os03t0709100-01
Chr03	irgsp1_rep	CDS	28598771	28598966	.	-	0	Parent=Os03t0709100-01
Chr03	irgsp1_rep	CDS	28598462	28598661	.	-	2	Parent=Os03t0709100-01
Chr03	irgsp1_rep	three_prime_UTR	28598319	28598461	.	-	.	Parent=Os03t0709100-01
Chr03	irgsp1_rep	mRNA	28600550	28603935	.	+	.	ID=Os03t0709200-01;Name=Os03t0709200-01;Locus_id=Os03g0709200;Note=NB-ARC domain containing protein.;Transcript_evidence=AK318615 (DDBJ%2C Best hit);ORF_evidence=NP_001173609.1 (RefSeq);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J100089D03;TENOR=Os03t0709200-01;KEGG=Os03t0709200-01
Chr03	irgsp1_rep	five_prime_UTR	28600550	28600568	.	+	.	Parent=Os03t0709200-01
Chr03	irgsp1_rep	CDS	28600569	28603448	.	+	0	Parent=Os03t0709200-01
Chr03	irgsp1_rep	three_prime_UTR	28603449	28603935	.	+	.	Parent=Os03t0709200-01
Chr03	irgsp1_rep	mRNA	28604458	28606325	.	-	.	ID=Os03t0709300-01;Name=Os03t0709300-01;Locus_id=Os03g0709300;CGSNL Gene Symbol=UCL9;CGSNL Gene Name=UCLACYANIN-LIKE PROTEIN 9;Oryzabase Gene Symbol Synonym(s)=OsUCL9;Oryzabase Gene Name Synonym(s)=uclacyanin-like protein 9;Note=Similar to Chemocyanin precursor (Basic blue protein) (Plantacyanin).;Transcript_evidence=AK100153 (DDBJ%2C Best hit);ORF_evidence=B6SXE9 (UniProt);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Blue (type 1) copper domain (IPR000923),Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);NIAS_FLcDNA=J023015O19;Oryzabase=9758;Expression=AK100153;TENOR=Os03t0709300-01;KEGG=Os03t0709300-01
Chr03	irgsp1_rep	five_prime_UTR	28606214	28606325	.	-	.	Parent=Os03t0709300-01
Chr03	irgsp1_rep	CDS	28606024	28606213	.	-	0	Parent=Os03t0709300-01
Chr03	irgsp1_rep	CDS	28604707	28604906	.	-	2	Parent=Os03t0709300-01
Chr03	irgsp1_rep	three_prime_UTR	28604458	28604706	.	-	.	Parent=Os03t0709300-01
Chr03	irgsp1_rep	mRNA	28610128	28610187	.	+	.	ID=Os03t0709533-00;Name=Os03t0709533-00;Locus_id=Os03g0709533;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0709533-00
Chr03	irgsp1_rep	exon	28610128	28610187	.	+	.	Parent=Os03t0709533-00
Chr03	irgsp1_rep	mRNA	28631644	28633235	.	+	.	ID=Os03t0710000-01;Name=Os03t0710000-01;Locus_id=Os03g0710000;Note=Protein of unknown function DUF292%2C eukaryotic domain containing protein.;Transcript_evidence=AK060065 (DDBJ%2C Best hit);ORF_evidence=A2XL85 (UniProt);InterPro=Domain of unknown function DUF292%2C eukaryotic (IPR005061);NIAS_FLcDNA=006-305-H03;Expression=AK060065;TENOR=Os03t0710000-01;KEGG=Os03t0710000-01
Chr03	irgsp1_rep	five_prime_UTR	28631644	28631794	.	+	.	Parent=Os03t0710000-01
Chr03	irgsp1_rep	CDS	28631795	28632087	.	+	0	Parent=Os03t0710000-01
Chr03	irgsp1_rep	CDS	28632225	28632396	.	+	1	Parent=Os03t0710000-01
Chr03	irgsp1_rep	CDS	28632487	28633089	.	+	0	Parent=Os03t0710000-01
Chr03	irgsp1_rep	three_prime_UTR	28633090	28633235	.	+	.	Parent=Os03t0710000-01
Chr03	irgsp1_rep	mRNA	28631737	28633255	.	+	.	ID=Os03t0710000-02;Name=Os03t0710000-02;Locus_id=Os03g0710000;Note=Protein of unknown function DUF292%2C eukaryotic domain containing protein.;Transcript_evidence=AK099364 (DDBJ%2C Best hit),AK104418 (DDBJ%2C Best hit);ORF_evidence=A2XL85 (UniProt);InterPro=Domain of unknown function DUF292%2C eukaryotic (IPR005061);NIAS_FLcDNA=J033051P12,006-205-A12;Expression=AK099364;TENOR=Os03t0710000-02;KEGG=Os03t0710000-02
Chr03	irgsp1_rep	five_prime_UTR	28631737	28631794	.	+	.	Parent=Os03t0710000-02
Chr03	irgsp1_rep	CDS	28631795	28632087	.	+	0	Parent=Os03t0710000-02
Chr03	irgsp1_rep	CDS	28632225	28632396	.	+	1	Parent=Os03t0710000-02
Chr03	irgsp1_rep	CDS	28632487	28633089	.	+	0	Parent=Os03t0710000-02
Chr03	irgsp1_rep	three_prime_UTR	28633090	28633255	.	+	.	Parent=Os03t0710000-02
Chr03	irgsp1_rep	mRNA	28633318	28643842	.	-	.	ID=Os03t0710100-01;Name=Os03t0710100-01;Locus_id=Os03g0710100;CGSNL Gene Symbol=HOP2;CGSNL Gene Name=HOMOLOGOUS PAIRING PROTEIN2;Oryzabase Gene Symbol Synonym(s)=OsHOP2;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=AK069094 (DDBJ%2C Best hit);ORF_evidence=Q53RJ3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023006I05;Oryzabase=23004;TENOR=Os03t0710100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	28643638	28643842	.	-	.	Parent=Os03t0710100-01
Chr03	irgsp1_rep	CDS	28643347	28643637	.	-	0	Parent=Os03t0710100-01
Chr03	irgsp1_rep	CDS	28641489	28642393	.	-	0	Parent=Os03t0710100-01
Chr03	irgsp1_rep	CDS	28641315	28641397	.	-	1	Parent=Os03t0710100-01
Chr03	irgsp1_rep	CDS	28640672	28640946	.	-	2	Parent=Os03t0710100-01
Chr03	irgsp1_rep	CDS	28640503	28640565	.	-	0	Parent=Os03t0710100-01
Chr03	irgsp1_rep	CDS	28640263	28640335	.	-	0	Parent=Os03t0710100-01
Chr03	irgsp1_rep	CDS	28640002	28640158	.	-	2	Parent=Os03t0710100-01
Chr03	irgsp1_rep	CDS	28639624	28639915	.	-	1	Parent=Os03t0710100-01
Chr03	irgsp1_rep	CDS	28639326	28639440	.	-	0	Parent=Os03t0710100-01
Chr03	irgsp1_rep	CDS	28639036	28639166	.	-	2	Parent=Os03t0710100-01
Chr03	irgsp1_rep	three_prime_UTR	28639004	28639035	.	-	.	Parent=Os03t0710100-01
Chr03	irgsp1_rep	three_prime_UTR	28638778	28638852	.	-	.	Parent=Os03t0710100-01
Chr03	irgsp1_rep	three_prime_UTR	28638507	28638687	.	-	.	Parent=Os03t0710100-01
Chr03	irgsp1_rep	three_prime_UTR	28634359	28634626	.	-	.	Parent=Os03t0710100-01
Chr03	irgsp1_rep	three_prime_UTR	28634190	28634260	.	-	.	Parent=Os03t0710100-01
Chr03	irgsp1_rep	three_prime_UTR	28633889	28634077	.	-	.	Parent=Os03t0710100-01
Chr03	irgsp1_rep	three_prime_UTR	28633318	28633688	.	-	.	Parent=Os03t0710100-01
Chr03	irgsp1_rep	mRNA	28633286	28636276	.	-	.	ID=Os03t0710100-02;Name=Os03t0710100-02;Locus_id=Os03g0710100;RAP-DB Gene Symbol Synonym(s)=OsHOP2;RAP-DB Gene Name Synonym(s)=HOMOLOGOUS PAIRING PROTEIN2;CGSNL Gene Symbol=HOP2;CGSNL Gene Name=HOMOLOGOUS PAIRING PROTEIN2;Oryzabase Gene Symbol Synonym(s)=OsHOP2;Note=Rice HOP2 homolog%2C Promotion of homologous pairing and synapsis in meiosis%2C Regulation of crossover maturation;Transcript_evidence=AK102972;ORF_evidence=Q10E31;InterPro=Winged helix-like DNA-binding domain superfamily (IPR036388),Homologous-pairing protein 2%2C winged helix domain (IPR010776);NIAS_FLcDNA=J033115K05;Manual Curation=January 4%2C 2019;Literature_PMID=30584664;Oryzabase=23004;Expression=AK102972;TENOR=Os03t0710100-02;Subcellular location=Chromatin (GO:0000785)
Chr03	irgsp1_rep	five_prime_UTR	28636212	28636276	.	-	.	Parent=Os03t0710100-02
Chr03	irgsp1_rep	CDS	28636184	28636211	.	-	0	Parent=Os03t0710100-02
Chr03	irgsp1_rep	CDS	28635990	28636015	.	-	2	Parent=Os03t0710100-02
Chr03	irgsp1_rep	CDS	28634359	28634626	.	-	0	Parent=Os03t0710100-02
Chr03	irgsp1_rep	CDS	28634190	28634260	.	-	2	Parent=Os03t0710100-02
Chr03	irgsp1_rep	CDS	28633889	28634077	.	-	0	Parent=Os03t0710100-02
Chr03	irgsp1_rep	CDS	28633587	28633688	.	-	0	Parent=Os03t0710100-02
Chr03	irgsp1_rep	three_prime_UTR	28633286	28633586	.	-	.	Parent=Os03t0710100-02
Chr03	irgsp1_rep	mRNA	28647086	28649570	.	+	.	ID=Os03t0710500-00;Name=Os03t0710500-00;Locus_id=Os03g0710500;Oryzabase Gene Symbol Synonym(s)=OsBiP2%2C Bip2;Oryzabase Gene Name Synonym(s)=ER chaperone BiP2%2C Binding protein 2;Note=Similar to Luminal binding protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q40924 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Heat shock protein Hsp70 (IPR001023),Heat shock protein 70 (IPR013126),Heat shock protein 70%2C conserved site (IPR018181);Oryzabase=10083;TENOR=Os03t0710500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	28647086	28647143	.	+	0	Parent=Os03t0710500-00
Chr03	irgsp1_rep	CDS	28647246	28647516	.	+	2	Parent=Os03t0710500-00
Chr03	irgsp1_rep	CDS	28647633	28647847	.	+	1	Parent=Os03t0710500-00
Chr03	irgsp1_rep	CDS	28647934	28648662	.	+	2	Parent=Os03t0710500-00
Chr03	irgsp1_rep	CDS	28648748	28648902	.	+	2	Parent=Os03t0710500-00
Chr03	irgsp1_rep	CDS	28648989	28649570	.	+	0	Parent=Os03t0710500-00
Chr03	irgsp1_rep	mRNA	28649776	28650341	.	-	.	ID=Os03t0710550-01;Name=Os03t0710550-01;Locus_id=Os03g0710550;Note=Conserved hypothetical protein.;Transcript_evidence=AK288133 (DDBJ%2C Best hit);ORF_evidence=NP_001173611.1 (RefSeq);NIAS_FLcDNA=J080302L18;TENOR=Os03t0710550-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	28650340	28650341	.	-	.	Parent=Os03t0710550-01
Chr03	irgsp1_rep	CDS	28650007	28650339	.	-	0	Parent=Os03t0710550-01
Chr03	irgsp1_rep	three_prime_UTR	28649776	28650006	.	-	.	Parent=Os03t0710550-01
Chr03	irgsp1_rep	mRNA	28651110	28653063	.	-	.	ID=Os03t0710600-01;Name=Os03t0710600-01;Locus_id=Os03g0710600;Note=Conserved hypothetical protein.;Transcript_evidence=AK068746 (DDBJ%2C Best hit);ORF_evidence=A2XL91 (UniProt);NIAS_FLcDNA=J013161N21;Expression=AK068746;TENOR=Os03t0710600-01;KEGG=Os03t0710600-01
Chr03	irgsp1_rep	five_prime_UTR	28652964	28653063	.	-	.	Parent=Os03t0710600-01
Chr03	irgsp1_rep	CDS	28652538	28652963	.	-	0	Parent=Os03t0710600-01
Chr03	irgsp1_rep	CDS	28651421	28651594	.	-	0	Parent=Os03t0710600-01
Chr03	irgsp1_rep	three_prime_UTR	28651110	28651420	.	-	.	Parent=Os03t0710600-01
Chr03	irgsp1_rep	mRNA	28655240	28657433	.	-	.	ID=Os03t0710700-00;Name=Os03t0710700-00;Locus_id=Os03g0710700;Note=Similar to predicted protein.;Transcript_evidence=CT835290 (DDBJ%2C Best hit);ORF_evidence=NP_195677.2 (RefSeq);GO=Biological Process: glycolipid transport (GO:0046836),Cellular Component: cytoplasm (GO:0005737),Molecular Function: glycolipid transporter activity (GO:0017089),Molecular Function: glycolipid binding (GO:0051861);InterPro=Glycolipid transfer protein domain (IPR014830);TENOR=Os03t0710700-00;KEGG=Os03t0710700-00
Chr03	irgsp1_rep	five_prime_UTR	28657145	28657433	.	-	.	Parent=Os03t0710700-00
Chr03	irgsp1_rep	CDS	28656872	28657144	.	-	0	Parent=Os03t0710700-00
Chr03	irgsp1_rep	CDS	28656234	28656406	.	-	0	Parent=Os03t0710700-00
Chr03	irgsp1_rep	CDS	28655740	28655885	.	-	1	Parent=Os03t0710700-00
Chr03	irgsp1_rep	CDS	28655512	28655618	.	-	2	Parent=Os03t0710700-00
Chr03	irgsp1_rep	three_prime_UTR	28655240	28655511	.	-	.	Parent=Os03t0710700-00
Chr03	irgsp1_rep	mRNA	28664068	28667703	.	+	.	ID=Os03t0710800-01;Name=Os03t0710800-01;Locus_id=Os03g0710800;RAP-DB Gene Symbol Synonym(s)=GF14f%2C SR14-3-3;RAP-DB Gene Name Synonym(s)=G-box factor 14-3-3f;CGSNL Gene Symbol=GF14F;CGSNL Gene Name=G-BOX FACTOR 14-3-3F PROTEIN;Oryzabase Gene Symbol Synonym(s)=GF14f%2C SR14-3-3%2C OsGF14f%2C S94%2C ric1%2C 14-3-3f;Oryzabase Gene Name Synonym(s)=G-box factor 14-3-3f protein%2C ras-related small GTP-binding protein ric1;Note=Member of the 14-3-3 protein family%2C Negative regulation of grain filling of inferior spikelets%2C Response to biotic and abiotic stress;Transcript_evidence=AK062077,AK103065;ORF_evidence=Q06967;GO=Molecular Function: protein domain specific binding (GO:0019904);InterPro=14-3-3 domain superfamily (IPR036815),14-3-3 protein (IPR000308),14-3-3 domain (IPR023410),14-3-3 protein%2C conserved site (IPR023409);NIAS_FLcDNA=001-044-F06,J033117N24;Manual Curation=May 7%2C 2019;Literature_PMID=30912217,16766513;Oryzabase=11412;Expression=AK062077;TENOR=Os03t0710800-01;KEGG=Os03t0710800-01;Subcellular location=nucleus (GO:0005634)
Chr03	irgsp1_rep	five_prime_UTR	28664068	28664228	.	+	.	Parent=Os03t0710800-01
Chr03	irgsp1_rep	five_prime_UTR	28665413	28665461	.	+	.	Parent=Os03t0710800-01
Chr03	irgsp1_rep	CDS	28665462	28665868	.	+	0	Parent=Os03t0710800-01
Chr03	irgsp1_rep	CDS	28665962	28666040	.	+	1	Parent=Os03t0710800-01
Chr03	irgsp1_rep	CDS	28666403	28666525	.	+	0	Parent=Os03t0710800-01
Chr03	irgsp1_rep	CDS	28667237	28667353	.	+	0	Parent=Os03t0710800-01
Chr03	irgsp1_rep	CDS	28667466	28667522	.	+	0	Parent=Os03t0710800-01
Chr03	irgsp1_rep	three_prime_UTR	28667523	28667703	.	+	.	Parent=Os03t0710800-01
Chr03	irgsp1_rep	mRNA	28665459	28667348	.	-	.	ID=Os03t0710850-00;Name=Os03t0710850-00;Locus_id=Os03g0710850;Note=Non-protein coding transcript.;Transcript_evidence=BT017754 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0710850-00
Chr03	irgsp1_rep	exon	28667219	28667348	.	-	.	Parent=Os03t0710850-00
Chr03	irgsp1_rep	exon	28666413	28666505	.	-	.	Parent=Os03t0710850-00
Chr03	irgsp1_rep	exon	28665957	28666046	.	-	.	Parent=Os03t0710850-00
Chr03	irgsp1_rep	exon	28665459	28665863	.	-	.	Parent=Os03t0710850-00
Chr03	irgsp1_rep	mRNA	28671127	28678954	.	+	.	ID=Os03t0710900-00;Name=Os03t0710900-00;Locus_id=Os03g0710900;Note=Similar to CCAAT displacement protein-related / CDP-related.;Transcript_evidence=AK369948 (DDBJ);ORF_evidence=NP_566611.1 (RefSeq);GO=Biological Process: intra-Golgi vesicle-mediated transport (GO:0006891),Cellular Component: integral to Golgi membrane (GO:0030173);InterPro=CASP%2C C-terminal (IPR012955);TENOR=Os03t0710900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	28671127	28671199	.	+	.	Parent=Os03t0710900-00
Chr03	irgsp1_rep	CDS	28671200	28671335	.	+	0	Parent=Os03t0710900-00
Chr03	irgsp1_rep	CDS	28671991	28672280	.	+	2	Parent=Os03t0710900-00
Chr03	irgsp1_rep	CDS	28672867	28673016	.	+	0	Parent=Os03t0710900-00
Chr03	irgsp1_rep	CDS	28673731	28673819	.	+	0	Parent=Os03t0710900-00
Chr03	irgsp1_rep	CDS	28673936	28674045	.	+	1	Parent=Os03t0710900-00
Chr03	irgsp1_rep	CDS	28674150	28674244	.	+	2	Parent=Os03t0710900-00
Chr03	irgsp1_rep	CDS	28674715	28674767	.	+	0	Parent=Os03t0710900-00
Chr03	irgsp1_rep	CDS	28674979	28675144	.	+	1	Parent=Os03t0710900-00
Chr03	irgsp1_rep	CDS	28675514	28675606	.	+	0	Parent=Os03t0710900-00
Chr03	irgsp1_rep	CDS	28675909	28676037	.	+	0	Parent=Os03t0710900-00
Chr03	irgsp1_rep	CDS	28676154	28676273	.	+	0	Parent=Os03t0710900-00
Chr03	irgsp1_rep	CDS	28676467	28676547	.	+	0	Parent=Os03t0710900-00
Chr03	irgsp1_rep	CDS	28677099	28677206	.	+	0	Parent=Os03t0710900-00
Chr03	irgsp1_rep	CDS	28677499	28677642	.	+	0	Parent=Os03t0710900-00
Chr03	irgsp1_rep	CDS	28677724	28677822	.	+	0	Parent=Os03t0710900-00
Chr03	irgsp1_rep	CDS	28677904	28677983	.	+	0	Parent=Os03t0710900-00
Chr03	irgsp1_rep	CDS	28678434	28678526	.	+	1	Parent=Os03t0710900-00
Chr03	irgsp1_rep	CDS	28678600	28678666	.	+	1	Parent=Os03t0710900-00
Chr03	irgsp1_rep	three_prime_UTR	28678667	28678954	.	+	.	Parent=Os03t0710900-00
Chr03	irgsp1_rep	mRNA	28686958	28689501	.	+	.	ID=Os03t0711100-01;Name=Os03t0711100-01;Locus_id=Os03g0711100;RAP-DB Gene Symbol Synonym(s)=OsCOL10%2C OsBBX10%2C OsJ%2C OsCCT14;RAP-DB Gene Name Synonym(s)=B-box-containing protein 10%2C CCT domain-containing gene 14%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 14%2C CCT domain protein 14;Oryzabase Gene Symbol Synonym(s)=OsBBX10%2C OsJ%2C OsCCT14%2C OsCOL10%2C COL10%2C OsCOL9%2C BBX10%2C CCT14%2C COL9;Oryzabase Gene Name Synonym(s)=B-box-containing protein 10%2C CCT domain-containing gene 14%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 14%2C CCT domain protein 14%2C CONSTANS-Like 10%2C CONSTANS-like 9;Note=Member of the CONSTANS-like (COL) family%2C Flowering time repressor;Transcript_evidence=AK120563;ORF_evidence=Q53RJ0;GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Cellular Component: intracellular (GO:0005622);InterPro=B-box-type zinc finger (IPR000315),CCT domain (IPR010402);NIAS_FLcDNA=J013132M18;Manual Curation=April 21%2C 2016;Literature_PMID=26872834,23118960;Oryzabase=11641;Expression=AK120563;TENOR=Os03t0711100-01;KEGG=Os03t0711100-01
Chr03	irgsp1_rep	five_prime_UTR	28686958	28687032	.	+	.	Parent=Os03t0711100-01
Chr03	irgsp1_rep	CDS	28687033	28687989	.	+	0	Parent=Os03t0711100-01
Chr03	irgsp1_rep	CDS	28688694	28689002	.	+	0	Parent=Os03t0711100-01
Chr03	irgsp1_rep	three_prime_UTR	28689003	28689501	.	+	.	Parent=Os03t0711100-01
Chr03	irgsp1_rep	mRNA	28687026	28688911	.	-	.	ID=Os03t0711150-00;Name=Os03t0711150-00;Locus_id=Os03g0711150;Note=Hypothetical protein.;Transcript_evidence=tplb0030k24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0711150-00
Chr03	irgsp1_rep	five_prime_UTR	28688622	28688911	.	-	.	Parent=Os03t0711150-00
Chr03	irgsp1_rep	five_prime_UTR	28687521	28688091	.	-	.	Parent=Os03t0711150-00
Chr03	irgsp1_rep	CDS	28687026	28687520	.	-	0	Parent=Os03t0711150-00
Chr03	irgsp1_rep	mRNA	28690392	28695611	.	-	.	ID=Os03t0711200-01;Name=Os03t0711200-01;Locus_id=Os03g0711200;Note=Similar to Phosphatidylinositol 4-kinase.;Transcript_evidence=AK063479 (DDBJ%2C Best hit);ORF_evidence=Q8L5D9 (UniProt);GO=Biological Process: phosphatidylinositol phosphorylation (GO:0046854),Biological Process: phosphatidylinositol-mediated signaling (GO:0048015),Molecular Function: inositol or phosphatidylinositol kinase activity (GO:0004428),Molecular Function: binding (GO:0005488),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Phosphatidylinositol 3-/4-kinase%2C catalytic (IPR000403),Phosphoinositide 3-kinase%2C accessory (PIK) domain (IPR001263),Protein kinase-like domain (IPR011009),Phosphatidylinositol Kinase (IPR015433),Armadillo-type fold (IPR016024),Phosphatidylinositol 3/4-kinase%2C conserved site (IPR018936);NIAS_FLcDNA=001-116-B07;Expression=AK063479;TENOR=Os03t0711200-01;KEGG=Os03t0711200-01 (EC:2.7.1.67)
Chr03	irgsp1_rep	five_prime_UTR	28695610	28695611	.	-	.	Parent=Os03t0711200-01
Chr03	irgsp1_rep	CDS	28695533	28695609	.	-	0	Parent=Os03t0711200-01
Chr03	irgsp1_rep	CDS	28695294	28695447	.	-	1	Parent=Os03t0711200-01
Chr03	irgsp1_rep	CDS	28694131	28694397	.	-	0	Parent=Os03t0711200-01
Chr03	irgsp1_rep	CDS	28693906	28693983	.	-	0	Parent=Os03t0711200-01
Chr03	irgsp1_rep	CDS	28693699	28693746	.	-	0	Parent=Os03t0711200-01
Chr03	irgsp1_rep	CDS	28692811	28692983	.	-	0	Parent=Os03t0711200-01
Chr03	irgsp1_rep	CDS	28692480	28692675	.	-	1	Parent=Os03t0711200-01
Chr03	irgsp1_rep	CDS	28692094	28692234	.	-	0	Parent=Os03t0711200-01
Chr03	irgsp1_rep	CDS	28691198	28691406	.	-	0	Parent=Os03t0711200-01
Chr03	irgsp1_rep	CDS	28690959	28691120	.	-	1	Parent=Os03t0711200-01
Chr03	irgsp1_rep	CDS	28690617	28690875	.	-	1	Parent=Os03t0711200-01
Chr03	irgsp1_rep	three_prime_UTR	28690392	28690616	.	-	.	Parent=Os03t0711200-01
Chr03	irgsp1_rep	mRNA	28700354	28705493	.	+	.	ID=Os03t0711250-01;Name=Os03t0711250-01;Locus_id=Os03g0711250;Note=Hypothetical gene.;Transcript_evidence=AK289048 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090092M19;TENOR=Os03t0711250-01
Chr03	irgsp1_rep	five_prime_UTR	28700354	28700759	.	+	.	Parent=Os03t0711250-01
Chr03	irgsp1_rep	five_prime_UTR	28701342	28701510	.	+	.	Parent=Os03t0711250-01
Chr03	irgsp1_rep	five_prime_UTR	28701867	28702173	.	+	.	Parent=Os03t0711250-01
Chr03	irgsp1_rep	five_prime_UTR	28702304	28702431	.	+	.	Parent=Os03t0711250-01
Chr03	irgsp1_rep	five_prime_UTR	28702507	28702665	.	+	.	Parent=Os03t0711250-01
Chr03	irgsp1_rep	five_prime_UTR	28702799	28702969	.	+	.	Parent=Os03t0711250-01
Chr03	irgsp1_rep	five_prime_UTR	28703863	28703911	.	+	.	Parent=Os03t0711250-01
Chr03	irgsp1_rep	CDS	28703912	28704022	.	+	0	Parent=Os03t0711250-01
Chr03	irgsp1_rep	CDS	28704115	28704458	.	+	0	Parent=Os03t0711250-01
Chr03	irgsp1_rep	CDS	28704612	28705493	.	+	1	Parent=Os03t0711250-01
Chr03	irgsp1_rep	mRNA	28708952	28716214	.	-	.	ID=Os03t0711300-01;Name=Os03t0711300-01;Locus_id=Os03g0711300;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK102350 (DDBJ%2C Best hit);ORF_evidence=C3TX65 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Calcium/calmodulin-dependent/calcium-dependent protein kinase (IPR020636);NIAS_FLcDNA=J033091E04;Expression=AK102350;TENOR=Os03t0711300-01;KEGG=Os03t0711300-01 (EC:2.7.11.17)
Chr03	irgsp1_rep	five_prime_UTR	28716049	28716214	.	-	.	Parent=Os03t0711300-01
Chr03	irgsp1_rep	five_prime_UTR	28715387	28715411	.	-	.	Parent=Os03t0711300-01
Chr03	irgsp1_rep	CDS	28714997	28715386	.	-	0	Parent=Os03t0711300-01
Chr03	irgsp1_rep	CDS	28714126	28714200	.	-	0	Parent=Os03t0711300-01
Chr03	irgsp1_rep	CDS	28714006	28714050	.	-	0	Parent=Os03t0711300-01
Chr03	irgsp1_rep	CDS	28713714	28713788	.	-	0	Parent=Os03t0711300-01
Chr03	irgsp1_rep	CDS	28712588	28712675	.	-	0	Parent=Os03t0711300-01
Chr03	irgsp1_rep	CDS	28712334	28712443	.	-	2	Parent=Os03t0711300-01
Chr03	irgsp1_rep	CDS	28710966	28711061	.	-	0	Parent=Os03t0711300-01
Chr03	irgsp1_rep	CDS	28710193	28710259	.	-	0	Parent=Os03t0711300-01
Chr03	irgsp1_rep	CDS	28709653	28709768	.	-	2	Parent=Os03t0711300-01
Chr03	irgsp1_rep	CDS	28709497	28709575	.	-	0	Parent=Os03t0711300-01
Chr03	irgsp1_rep	CDS	28709233	28709372	.	-	2	Parent=Os03t0711300-01
Chr03	irgsp1_rep	three_prime_UTR	28708952	28709232	.	-	.	Parent=Os03t0711300-01
Chr03	irgsp1_rep	mRNA	28708663	28715028	.	-	.	ID=Os03t0711300-02;Name=Os03t0711300-02;Locus_id=Os03g0711300;Note=Similar to Protein kinase.;Transcript_evidence=AK060694 (DDBJ%2C Best hit);ORF_evidence=C3TX65 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635),Calcium/calmodulin-dependent/calcium-dependent protein kinase (IPR020636);NIAS_FLcDNA=001-030-D04;Expression=AK060694;TENOR=Os03t0711300-02;KEGG=Os03t0711300-02 (EC:2.7.11.17)
Chr03	irgsp1_rep	five_prime_UTR	28715027	28715028	.	-	.	Parent=Os03t0711300-02
Chr03	irgsp1_rep	CDS	28714997	28715026	.	-	0	Parent=Os03t0711300-02
Chr03	irgsp1_rep	CDS	28714126	28714200	.	-	0	Parent=Os03t0711300-02
Chr03	irgsp1_rep	CDS	28714006	28714050	.	-	0	Parent=Os03t0711300-02
Chr03	irgsp1_rep	CDS	28713714	28713788	.	-	0	Parent=Os03t0711300-02
Chr03	irgsp1_rep	CDS	28712588	28712675	.	-	0	Parent=Os03t0711300-02
Chr03	irgsp1_rep	CDS	28712334	28712443	.	-	2	Parent=Os03t0711300-02
Chr03	irgsp1_rep	CDS	28710966	28711061	.	-	0	Parent=Os03t0711300-02
Chr03	irgsp1_rep	CDS	28710193	28710259	.	-	0	Parent=Os03t0711300-02
Chr03	irgsp1_rep	CDS	28709653	28709768	.	-	2	Parent=Os03t0711300-02
Chr03	irgsp1_rep	CDS	28709497	28709575	.	-	0	Parent=Os03t0711300-02
Chr03	irgsp1_rep	CDS	28709233	28709372	.	-	2	Parent=Os03t0711300-02
Chr03	irgsp1_rep	three_prime_UTR	28708663	28709232	.	-	.	Parent=Os03t0711300-02
Chr03	irgsp1_rep	mRNA	28719395	28724712	.	-	.	ID=Os03t0711400-01;Name=Os03t0711400-01;Locus_id=Os03g0711400;Oryzabase Gene Symbol Synonym(s)=OsWD40-84;Note=Similar to Coatomer alpha subunit.;Transcript_evidence=AK100286 (DDBJ%2C Best hit);ORF_evidence=Q6RYF4 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: membrane coat (GO:0030117),Cellular Component: COPI vesicle coat (GO:0030126),Molecular Function: structural molecule activity (GO:0005198),Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),Coatomer%2C WD associated region (IPR006692),Coatomer%2C alpha subunit%2C C-terminal (IPR010714),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),Coatomer%2C alpha subunit (IPR016391),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J023075G08;Oryzabase=10765;Expression=AK100286;TENOR=Os03t0711400-01;KEGG=Os03t0711400-01
Chr03	irgsp1_rep	five_prime_UTR	28724570	28724712	.	-	.	Parent=Os03t0711400-01
Chr03	irgsp1_rep	CDS	28724362	28724569	.	-	0	Parent=Os03t0711400-01
Chr03	irgsp1_rep	CDS	28723182	28723676	.	-	2	Parent=Os03t0711400-01
Chr03	irgsp1_rep	CDS	28719815	28722768	.	-	2	Parent=Os03t0711400-01
Chr03	irgsp1_rep	three_prime_UTR	28719395	28719814	.	-	.	Parent=Os03t0711400-01
Chr03	irgsp1_rep	mRNA	28719688	28720707	.	-	.	ID=Os03t0711400-02;Name=Os03t0711400-02;Locus_id=Os03g0711400;Oryzabase Gene Symbol Synonym(s)=OsWD40-84;Note=Similar to cDNA clone:J023075G08%2C full insert sequence.;Transcript_evidence=AK059218 (DDBJ%2C Best hit);ORF_evidence=B7EQ85 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: COPI vesicle coat (GO:0030126),Molecular Function: structural molecule activity (GO:0005198),Molecular Function: protein binding (GO:0005515);InterPro=Coatomer%2C alpha subunit%2C C-terminal (IPR010714);NIAS_FLcDNA=001-024-C10;Oryzabase=10765;Expression=AK059218;TENOR=Os03t0711400-02;KEGG=Os03t0711400-02
Chr03	irgsp1_rep	five_prime_UTR	28720706	28720707	.	-	.	Parent=Os03t0711400-02
Chr03	irgsp1_rep	CDS	28719815	28720705	.	-	0	Parent=Os03t0711400-02
Chr03	irgsp1_rep	three_prime_UTR	28719688	28719814	.	-	.	Parent=Os03t0711400-02
Chr03	irgsp1_rep	mRNA	28720607	28724491	.	+	.	ID=Os03t0711425-00;Name=Os03t0711425-00;Locus_id=Os03g0711425;Note=Hypothetical protein.;Transcript_evidence=tplb0039i16 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0711425-00
Chr03	irgsp1_rep	five_prime_UTR	28720607	28720739	.	+	.	Parent=Os03t0711425-00
Chr03	irgsp1_rep	CDS	28720740	28721192	.	+	0	Parent=Os03t0711425-00
Chr03	irgsp1_rep	three_prime_UTR	28721193	28722764	.	+	.	Parent=Os03t0711425-00
Chr03	irgsp1_rep	three_prime_UTR	28723176	28723665	.	+	.	Parent=Os03t0711425-00
Chr03	irgsp1_rep	three_prime_UTR	28724348	28724491	.	+	.	Parent=Os03t0711425-00
Chr03	irgsp1_rep	mRNA	28730960	28732934	.	-	.	ID=Os03t0711500-01;Name=Os03t0711500-01;Locus_id=Os03g0711500;Oryzabase Gene Symbol Synonym(s)=OsWD40-85;Note=Similar to cDNA clone:J023075G08%2C full insert sequence.;Transcript_evidence=AK058652 (DDBJ%2C Best hit);ORF_evidence=B7EQ85 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: membrane coat (GO:0030117),Cellular Component: COPI vesicle coat (GO:0030126),Molecular Function: structural molecule activity (GO:0005198),Molecular Function: protein binding (GO:0005515);InterPro=Coatomer%2C WD associated region (IPR006692),Coatomer%2C alpha subunit%2C C-terminal (IPR010714);NIAS_FLcDNA=001-018-F03;Oryzabase=10766;TENOR=Os03t0711500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	28731207	28732934	.	-	0	Parent=Os03t0711500-01
Chr03	irgsp1_rep	three_prime_UTR	28730960	28731206	.	-	.	Parent=Os03t0711500-01
Chr03	irgsp1_rep	mRNA	28731999	28736111	.	+	.	ID=Os03t0711525-00;Name=Os03t0711525-00;Locus_id=Os03g0711525;Note=Hypothetical protein.;Transcript_evidence=tplb0039i16 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0711525-00
Chr03	irgsp1_rep	five_prime_UTR	28731999	28732131	.	+	.	Parent=Os03t0711525-00
Chr03	irgsp1_rep	CDS	28732132	28732584	.	+	0	Parent=Os03t0711525-00
Chr03	irgsp1_rep	three_prime_UTR	28732585	28734156	.	+	.	Parent=Os03t0711525-00
Chr03	irgsp1_rep	three_prime_UTR	28734895	28735384	.	+	.	Parent=Os03t0711525-00
Chr03	irgsp1_rep	three_prime_UTR	28735969	28736111	.	+	.	Parent=Os03t0711525-00
Chr03	irgsp1_rep	mRNA	28741264	28742402	.	-	.	ID=Os03t0711600-01;Name=Os03t0711600-01;Locus_id=Os03g0711600;Note=Similar to DNA binding protein (Fragment).;Transcript_evidence=AK288161 (DDBJ%2C Best hit);ORF_evidence=Q10E13 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H1/H5 (IPR005818),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),AT hook%2C DNA-binding motif (IPR017956),AT hook-like (IPR020478);NIAS_FLcDNA=J090001J16;TENOR=Os03t0711600-01;KEGG=Os03t0711600-01
Chr03	irgsp1_rep	five_prime_UTR	28742400	28742402	.	-	.	Parent=Os03t0711600-01
Chr03	irgsp1_rep	CDS	28742337	28742399	.	-	0	Parent=Os03t0711600-01
Chr03	irgsp1_rep	CDS	28741595	28742233	.	-	0	Parent=Os03t0711600-01
Chr03	irgsp1_rep	three_prime_UTR	28741264	28741594	.	-	.	Parent=Os03t0711600-01
Chr03	irgsp1_rep	mRNA	28740907	28742193	.	-	.	ID=Os03t0711600-02;Name=Os03t0711600-02;Locus_id=Os03g0711600;Note=Similar to AT hook motif family protein%2C expressed.;Transcript_evidence=AK289208 (DDBJ%2C Best hit);ORF_evidence=Q10E13 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H1/H5 (IPR005818),AT hook%2C DNA-binding motif (IPR017956),AT hook-like (IPR020478);NIAS_FLcDNA=J100058D20;TENOR=Os03t0711600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	28742192	28742193	.	-	.	Parent=Os03t0711600-02
Chr03	irgsp1_rep	CDS	28741595	28742191	.	-	0	Parent=Os03t0711600-02
Chr03	irgsp1_rep	three_prime_UTR	28740907	28741594	.	-	.	Parent=Os03t0711600-02
Chr03	irgsp1_rep	mRNA	28744729	28746317	.	-	.	ID=Os03t0711650-01;Name=Os03t0711650-01;Locus_id=Os03g0711650;Note=Similar to AT hook motif family protein%2C expressed.;Transcript_evidence=AK242375 (DDBJ%2C Best hit);ORF_evidence=Q10E13 (UniProt);NIAS_FLcDNA=J080039F09;TENOR=Os03t0711650-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	28746278	28746317	.	-	.	Parent=Os03t0711650-01
Chr03	irgsp1_rep	CDS	28746065	28746277	.	-	0	Parent=Os03t0711650-01
Chr03	irgsp1_rep	three_prime_UTR	28745549	28746064	.	-	.	Parent=Os03t0711650-01
Chr03	irgsp1_rep	three_prime_UTR	28745393	28745466	.	-	.	Parent=Os03t0711650-01
Chr03	irgsp1_rep	three_prime_UTR	28744729	28745256	.	-	.	Parent=Os03t0711650-01
Chr03	irgsp1_rep	mRNA	28746662	28748594	.	+	.	ID=Os03t0711700-00;Name=Os03t0711700-00;Locus_id=Os03g0711700;Note=Similar to Transcription factor S-II family protein%2C expressed.;Transcript_evidence=CT835090 (DDBJ%2C Best hit);ORF_evidence=Q10E12 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C TFIIS-type (IPR001222);TENOR=Os03t0711700-00;KEGG=Os03t0711700-00 (EC:2.7.7.6)
Chr03	irgsp1_rep	five_prime_UTR	28746662	28746710	.	+	.	Parent=Os03t0711700-00
Chr03	irgsp1_rep	CDS	28746711	28746828	.	+	0	Parent=Os03t0711700-00
Chr03	irgsp1_rep	CDS	28746919	28746959	.	+	2	Parent=Os03t0711700-00
Chr03	irgsp1_rep	CDS	28747984	28748070	.	+	0	Parent=Os03t0711700-00
Chr03	irgsp1_rep	CDS	28748153	28748209	.	+	0	Parent=Os03t0711700-00
Chr03	irgsp1_rep	CDS	28748309	28748386	.	+	0	Parent=Os03t0711700-00
Chr03	irgsp1_rep	three_prime_UTR	28748387	28748594	.	+	.	Parent=Os03t0711700-00
Chr03	irgsp1_rep	mRNA	28750215	28762250	.	-	.	ID=Os03t0711800-01;Name=Os03t0711800-01;Locus_id=Os03g0711800;Note=Similar to IRE homolog 1 (Fragment).;Transcript_evidence=AK122108 (DDBJ%2C Best hit);ORF_evidence=Q9LVI5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),AGC-kinase%2C C-terminal (IPR000961),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033126F17;Expression=AK122108;TENOR=Os03t0711800-01;KEGG=Os03t0711800-01
Chr03	irgsp1_rep	five_prime_UTR	28762202	28762250	.	-	.	Parent=Os03t0711800-01
Chr03	irgsp1_rep	CDS	28761556	28762201	.	-	0	Parent=Os03t0711800-01
Chr03	irgsp1_rep	CDS	28760572	28760639	.	-	2	Parent=Os03t0711800-01
Chr03	irgsp1_rep	CDS	28760273	28760458	.	-	0	Parent=Os03t0711800-01
Chr03	irgsp1_rep	CDS	28758839	28760176	.	-	0	Parent=Os03t0711800-01
Chr03	irgsp1_rep	CDS	28757868	28758040	.	-	0	Parent=Os03t0711800-01
Chr03	irgsp1_rep	CDS	28757484	28757718	.	-	1	Parent=Os03t0711800-01
Chr03	irgsp1_rep	CDS	28755780	28755872	.	-	0	Parent=Os03t0711800-01
Chr03	irgsp1_rep	CDS	28755563	28755703	.	-	0	Parent=Os03t0711800-01
Chr03	irgsp1_rep	CDS	28755395	28755487	.	-	0	Parent=Os03t0711800-01
Chr03	irgsp1_rep	CDS	28754032	28754242	.	-	0	Parent=Os03t0711800-01
Chr03	irgsp1_rep	CDS	28753864	28753949	.	-	2	Parent=Os03t0711800-01
Chr03	irgsp1_rep	CDS	28753512	28753600	.	-	0	Parent=Os03t0711800-01
Chr03	irgsp1_rep	CDS	28752670	28752721	.	-	1	Parent=Os03t0711800-01
Chr03	irgsp1_rep	CDS	28752507	28752563	.	-	0	Parent=Os03t0711800-01
Chr03	irgsp1_rep	CDS	28752246	28752419	.	-	0	Parent=Os03t0711800-01
Chr03	irgsp1_rep	CDS	28752056	28752133	.	-	0	Parent=Os03t0711800-01
Chr03	irgsp1_rep	CDS	28751067	28751150	.	-	0	Parent=Os03t0711800-01
Chr03	irgsp1_rep	three_prime_UTR	28750985	28751066	.	-	.	Parent=Os03t0711800-01
Chr03	irgsp1_rep	three_prime_UTR	28750215	28750893	.	-	.	Parent=Os03t0711800-01
Chr03	irgsp1_rep	mRNA	28750215	28759686	.	-	.	ID=Os03t0711800-02;Name=Os03t0711800-02;Locus_id=Os03g0711800;Note=Similar to predicted protein.;Transcript_evidence=AK106515 (DDBJ%2C Best hit);ORF_evidence=Q9MB45 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),AGC-kinase%2C C-terminal (IPR000961),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=002-107-A10;Expression=AK106515;TENOR=Os03t0711800-02;KEGG=Os03t0711800-02
Chr03	irgsp1_rep	five_prime_UTR	28759685	28759686	.	-	.	Parent=Os03t0711800-02
Chr03	irgsp1_rep	CDS	28758839	28759684	.	-	0	Parent=Os03t0711800-02
Chr03	irgsp1_rep	CDS	28757868	28758040	.	-	0	Parent=Os03t0711800-02
Chr03	irgsp1_rep	CDS	28757484	28757718	.	-	1	Parent=Os03t0711800-02
Chr03	irgsp1_rep	CDS	28755780	28755872	.	-	0	Parent=Os03t0711800-02
Chr03	irgsp1_rep	CDS	28755563	28755703	.	-	0	Parent=Os03t0711800-02
Chr03	irgsp1_rep	CDS	28755395	28755487	.	-	0	Parent=Os03t0711800-02
Chr03	irgsp1_rep	CDS	28754032	28754218	.	-	0	Parent=Os03t0711800-02
Chr03	irgsp1_rep	CDS	28753864	28753949	.	-	2	Parent=Os03t0711800-02
Chr03	irgsp1_rep	CDS	28753512	28753600	.	-	0	Parent=Os03t0711800-02
Chr03	irgsp1_rep	CDS	28752670	28752721	.	-	1	Parent=Os03t0711800-02
Chr03	irgsp1_rep	CDS	28752507	28752563	.	-	0	Parent=Os03t0711800-02
Chr03	irgsp1_rep	CDS	28752246	28752419	.	-	0	Parent=Os03t0711800-02
Chr03	irgsp1_rep	CDS	28752056	28752133	.	-	0	Parent=Os03t0711800-02
Chr03	irgsp1_rep	CDS	28751067	28751150	.	-	0	Parent=Os03t0711800-02
Chr03	irgsp1_rep	three_prime_UTR	28750985	28751066	.	-	.	Parent=Os03t0711800-02
Chr03	irgsp1_rep	three_prime_UTR	28750215	28750893	.	-	.	Parent=Os03t0711800-02
Chr03	irgsp1_rep	mRNA	28750480	28759508	.	-	.	ID=Os03t0711800-03;Name=Os03t0711800-03;Locus_id=Os03g0711800;Note=Similar to predicted protein.;Transcript_evidence=AK106520 (DDBJ%2C Best hit);ORF_evidence=Q9MB45 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),AGC-kinase%2C C-terminal (IPR000961),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=002-107-C10;Expression=AK106520;TENOR=Os03t0711800-03;KEGG=Os03t0711800-03
Chr03	irgsp1_rep	five_prime_UTR	28759508	28759508	.	-	.	Parent=Os03t0711800-03
Chr03	irgsp1_rep	CDS	28758839	28759507	.	-	0	Parent=Os03t0711800-03
Chr03	irgsp1_rep	CDS	28757868	28758040	.	-	0	Parent=Os03t0711800-03
Chr03	irgsp1_rep	CDS	28757484	28757718	.	-	1	Parent=Os03t0711800-03
Chr03	irgsp1_rep	CDS	28755780	28755872	.	-	0	Parent=Os03t0711800-03
Chr03	irgsp1_rep	CDS	28755563	28755703	.	-	0	Parent=Os03t0711800-03
Chr03	irgsp1_rep	CDS	28755395	28755487	.	-	0	Parent=Os03t0711800-03
Chr03	irgsp1_rep	CDS	28754032	28754242	.	-	0	Parent=Os03t0711800-03
Chr03	irgsp1_rep	CDS	28753864	28753949	.	-	2	Parent=Os03t0711800-03
Chr03	irgsp1_rep	CDS	28753512	28753600	.	-	0	Parent=Os03t0711800-03
Chr03	irgsp1_rep	CDS	28752670	28752721	.	-	1	Parent=Os03t0711800-03
Chr03	irgsp1_rep	CDS	28752507	28752563	.	-	0	Parent=Os03t0711800-03
Chr03	irgsp1_rep	CDS	28752246	28752419	.	-	0	Parent=Os03t0711800-03
Chr03	irgsp1_rep	CDS	28752056	28752133	.	-	0	Parent=Os03t0711800-03
Chr03	irgsp1_rep	CDS	28751067	28751150	.	-	0	Parent=Os03t0711800-03
Chr03	irgsp1_rep	three_prime_UTR	28750985	28751066	.	-	.	Parent=Os03t0711800-03
Chr03	irgsp1_rep	three_prime_UTR	28750480	28750893	.	-	.	Parent=Os03t0711800-03
Chr03	irgsp1_rep	mRNA	28766711	28767454	.	+	.	ID=Os03t0712000-00;Name=Os03t0712000-00;Locus_id=Os03g0712000;Note=Similar to Lipase family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10E06 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: lipid catabolic process (GO:0016042),Molecular Function: carboxylesterase activity (GO:0004091),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921),Mono-/di-acylglycerol lipase%2C N-terminal (IPR005592);TENOR=Os03t0712000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	28766711	28767454	.	+	0	Parent=Os03t0712000-00
Chr03	irgsp1_rep	mRNA	28769963	28772120	.	+	.	ID=Os03t0712100-01;Name=Os03t0712100-01;Locus_id=Os03g0712100;Note=Cell division cycle-associated protein domain containing protein.;Transcript_evidence=AK106258 (DDBJ%2C Best hit);ORF_evidence=Q9AUR0 (UniProt);InterPro=Zinc-finger domain of monoamine-oxidase A repressor R1 (IPR018866);NIAS_FLcDNA=002-100-F02;Expression=AK106258;TENOR=Os03t0712100-01;KEGG=Os03t0712100-01
Chr03	irgsp1_rep	five_prime_UTR	28769963	28770040	.	+	.	Parent=Os03t0712100-01
Chr03	irgsp1_rep	CDS	28770041	28770106	.	+	0	Parent=Os03t0712100-01
Chr03	irgsp1_rep	CDS	28770229	28770508	.	+	0	Parent=Os03t0712100-01
Chr03	irgsp1_rep	CDS	28770607	28770793	.	+	2	Parent=Os03t0712100-01
Chr03	irgsp1_rep	CDS	28770958	28771028	.	+	1	Parent=Os03t0712100-01
Chr03	irgsp1_rep	CDS	28771128	28771205	.	+	2	Parent=Os03t0712100-01
Chr03	irgsp1_rep	CDS	28771292	28771379	.	+	2	Parent=Os03t0712100-01
Chr03	irgsp1_rep	CDS	28771480	28771535	.	+	1	Parent=Os03t0712100-01
Chr03	irgsp1_rep	CDS	28771659	28771726	.	+	2	Parent=Os03t0712100-01
Chr03	irgsp1_rep	three_prime_UTR	28771727	28772120	.	+	.	Parent=Os03t0712100-01
Chr03	irgsp1_rep	mRNA	28774588	28777241	.	+	.	ID=Os03t0712200-01;Name=Os03t0712200-01;Locus_id=Os03g0712200;Note=Zinc finger%2C RanBP2-type domain containing protein.;Transcript_evidence=AK073205 (DDBJ%2C Best hit),AK098968 (DDBJ%2C Best hit);ORF_evidence=Q9AUQ9 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RanBP2-type (IPR001876);NIAS_FLcDNA=J033024G06,J013088B04;Expression=AK073205;TENOR=Os03t0712200-01;KEGG=Os03t0712200-01
Chr03	irgsp1_rep	five_prime_UTR	28774588	28774619	.	+	.	Parent=Os03t0712200-01
Chr03	irgsp1_rep	CDS	28774620	28774996	.	+	0	Parent=Os03t0712200-01
Chr03	irgsp1_rep	CDS	28775256	28775373	.	+	1	Parent=Os03t0712200-01
Chr03	irgsp1_rep	CDS	28775674	28775981	.	+	0	Parent=Os03t0712200-01
Chr03	irgsp1_rep	CDS	28776057	28776188	.	+	1	Parent=Os03t0712200-01
Chr03	irgsp1_rep	CDS	28776277	28776375	.	+	1	Parent=Os03t0712200-01
Chr03	irgsp1_rep	CDS	28776555	28777092	.	+	1	Parent=Os03t0712200-01
Chr03	irgsp1_rep	three_prime_UTR	28777093	28777241	.	+	.	Parent=Os03t0712200-01
Chr03	irgsp1_rep	mRNA	28781652	28786598	.	+	.	ID=Os03t0712300-01;Name=Os03t0712300-01;Locus_id=Os03g0712300;Oryzabase Gene Symbol Synonym(s)=OsUEV1A%2C UEV1A;Oryzabase Gene Name Synonym(s)=Ubc-E2 variant 1A;Note=Similar to CROC-1-like protein (Fragment).;Transcript_evidence=AK120951 (DDBJ%2C Best hit);ORF_evidence=B6T4J0 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135);NIAS_FLcDNA=J023038L10;Oryzabase=21770;Expression=AK120951;TENOR=Os03t0712300-01;KEGG=Os03t0712300-01
Chr03	irgsp1_rep	five_prime_UTR	28781652	28781743	.	+	.	Parent=Os03t0712300-01
Chr03	irgsp1_rep	CDS	28781744	28781777	.	+	0	Parent=Os03t0712300-01
Chr03	irgsp1_rep	CDS	28785437	28785576	.	+	2	Parent=Os03t0712300-01
Chr03	irgsp1_rep	CDS	28785669	28785794	.	+	0	Parent=Os03t0712300-01
Chr03	irgsp1_rep	CDS	28785880	28786006	.	+	0	Parent=Os03t0712300-01
Chr03	irgsp1_rep	CDS	28786329	28786387	.	+	2	Parent=Os03t0712300-01
Chr03	irgsp1_rep	three_prime_UTR	28786388	28786598	.	+	.	Parent=Os03t0712300-01
Chr03	irgsp1_rep	mRNA	28797570	28798180	.	-	.	ID=Os03t0712400-01;Name=Os03t0712400-01;Locus_id=Os03g0712400;Note=Similar to atypical receptor-like kinase MARK.;Transcript_evidence=AK111063 (DDBJ%2C Best hit);ORF_evidence=NP_001105207.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-175-D10;Expression=AK111063;TENOR=Os03t0712400-01;KEGG=Os03t0712400-01
Chr03	irgsp1_rep	five_prime_UTR	28798179	28798180	.	-	.	Parent=Os03t0712400-01
Chr03	irgsp1_rep	CDS	28797636	28798178	.	-	0	Parent=Os03t0712400-01
Chr03	irgsp1_rep	three_prime_UTR	28797570	28797635	.	-	.	Parent=Os03t0712400-01
Chr03	irgsp1_rep	mRNA	28795423	28797588	.	-	.	ID=Os03t0712400-02;Name=Os03t0712400-02;Locus_id=Os03g0712400;Note=Similar to Atypical receptor-like kinase MARK.;Transcript_evidence=AK106604 (DDBJ%2C Best hit);ORF_evidence=NP_001151626.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-112-E02;Expression=AK106604;TENOR=Os03t0712400-02;KEGG=Os03t0712400-02
Chr03	irgsp1_rep	five_prime_UTR	28796941	28797588	.	-	.	Parent=Os03t0712400-02
Chr03	irgsp1_rep	CDS	28796263	28796940	.	-	0	Parent=Os03t0712400-02
Chr03	irgsp1_rep	three_prime_UTR	28795423	28796262	.	-	.	Parent=Os03t0712400-02
Chr03	irgsp1_rep	mRNA	28798419	28798833	.	+	.	ID=Os03t0712500-00;Name=Os03t0712500-00;Locus_id=Os03g0712500;Note=Hypothetical protein.;Transcript_evidence=BT086967 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0712500-00
Chr03	irgsp1_rep	CDS	28798419	28798833	.	+	0	Parent=Os03t0712500-00
Chr03	irgsp1_rep	mRNA	28804844	28810296	.	-	.	ID=Os03t0712600-01;Name=Os03t0712600-01;Locus_id=Os03g0712600;Note=Similar to F-box domain containing protein%2C expressed.;Transcript_evidence=AK103705 (DDBJ%2C Best hit);ORF_evidence=Q10DR5 (UniProt);NIAS_FLcDNA=J033136N14;Expression=AK103705;TENOR=Os03t0712600-01;KEGG=Os03t0712600-01
Chr03	irgsp1_rep	five_prime_UTR	28809689	28810296	.	-	.	Parent=Os03t0712600-01
Chr03	irgsp1_rep	five_prime_UTR	28809532	28809533	.	-	.	Parent=Os03t0712600-01
Chr03	irgsp1_rep	CDS	28808929	28809531	.	-	0	Parent=Os03t0712600-01
Chr03	irgsp1_rep	three_prime_UTR	28806331	28808928	.	-	.	Parent=Os03t0712600-01
Chr03	irgsp1_rep	three_prime_UTR	28804844	28805038	.	-	.	Parent=Os03t0712600-01
Chr03	irgsp1_rep	mRNA	28813619	28820086	.	+	.	ID=Os03t0712700-01;Name=Os03t0712700-01;Locus_id=Os03g0712700;RAP-DB Gene Symbol Synonym(s)=PFP%2C OscPGM;RAP-DB Gene Name Synonym(s)=fructose-6-phosphate 1-phosphotransferase;Oryzabase Gene Symbol Synonym(s)=PFP%2C OscPGM%2C cPGM;Oryzabase Gene Name Synonym(s)=fructose-6-phosphate 1-phosphotransferase%2C cytosolic phosphoglucomutase%2C "phosphoglucomutase%2C cytoplasmic 2";Note=Cytosolic phosphoglucomutase;Transcript_evidence=AK099746,AK072313;ORF_evidence=Q9AUQ4;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: organic substance metabolic process (GO:0071704),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: intramolecular transferase activity%2C phosphotransferases (GO:0016868);InterPro=Alpha-D-phosphohexomutase superfamily (IPR005841),Alpha-D-phosphohexomutase%2C alpha/beta/alpha I/II/III (IPR016055),Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain I (IPR005844),Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain II (IPR005845),Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain III (IPR005846),Alpha-D-phosphohexomutase%2C C-terminal (IPR005843),Alpha-D-phosphohexomutase%2C conserved site (IPR016066);NIAS_FLcDNA=J013091K12, J023019M17;Manual Curation=September 14%2C 2016;Literature_PMID=27588462;Oryzabase=16764;Expression=AK099746;TENOR=Os03t0712700-01;KEGG=Os03t0712700-01 (EC:5.4.2.2)
Chr03	irgsp1_rep	five_prime_UTR	28813619	28813727	.	+	.	Parent=Os03t0712700-01
Chr03	irgsp1_rep	CDS	28813728	28813808	.	+	0	Parent=Os03t0712700-01
Chr03	irgsp1_rep	CDS	28814795	28814876	.	+	0	Parent=Os03t0712700-01
Chr03	irgsp1_rep	CDS	28815271	28815326	.	+	2	Parent=Os03t0712700-01
Chr03	irgsp1_rep	CDS	28815858	28815971	.	+	0	Parent=Os03t0712700-01
Chr03	irgsp1_rep	CDS	28816089	28816151	.	+	0	Parent=Os03t0712700-01
Chr03	irgsp1_rep	CDS	28816238	28816357	.	+	0	Parent=Os03t0712700-01
Chr03	irgsp1_rep	CDS	28816455	28816555	.	+	0	Parent=Os03t0712700-01
Chr03	irgsp1_rep	CDS	28816702	28816761	.	+	1	Parent=Os03t0712700-01
Chr03	irgsp1_rep	CDS	28816848	28816947	.	+	1	Parent=Os03t0712700-01
Chr03	irgsp1_rep	CDS	28817026	28817180	.	+	0	Parent=Os03t0712700-01
Chr03	irgsp1_rep	CDS	28817266	28817361	.	+	1	Parent=Os03t0712700-01
Chr03	irgsp1_rep	CDS	28818115	28818178	.	+	1	Parent=Os03t0712700-01
Chr03	irgsp1_rep	CDS	28818253	28818334	.	+	0	Parent=Os03t0712700-01
Chr03	irgsp1_rep	CDS	28818643	28818818	.	+	2	Parent=Os03t0712700-01
Chr03	irgsp1_rep	CDS	28818907	28818983	.	+	0	Parent=Os03t0712700-01
Chr03	irgsp1_rep	CDS	28819242	28819374	.	+	1	Parent=Os03t0712700-01
Chr03	irgsp1_rep	CDS	28819544	28819660	.	+	0	Parent=Os03t0712700-01
Chr03	irgsp1_rep	CDS	28819775	28819846	.	+	0	Parent=Os03t0712700-01
Chr03	irgsp1_rep	three_prime_UTR	28819847	28820086	.	+	.	Parent=Os03t0712700-01
Chr03	irgsp1_rep	mRNA	28813627	28814342	.	+	.	ID=Os03t0712700-02;Name=Os03t0712700-02;Locus_id=Os03g0712700;Oryzabase Gene Symbol Synonym(s)=PFP%2C OscPGM%2C cPGM;Oryzabase Gene Name Synonym(s)=fructose-6-phosphate 1-phosphotransferase%2C cytosolic phosphoglucomutase%2C "phosphoglucomutase%2C cytoplasmic 2";Note=Similar to Phosphoglucomutase.;Transcript_evidence=AK121196 (DDBJ%2C Best hit);ORF_evidence=A5HSI1 (UniProt);NIAS_FLcDNA=J023086N16;Oryzabase=16764;Expression=AK121196;TENOR=Os03t0712700-02;KEGG=Os03t0712700-02 (EC:5.4.2.2)
Chr03	irgsp1_rep	five_prime_UTR	28813627	28813727	.	+	.	Parent=Os03t0712700-02
Chr03	irgsp1_rep	CDS	28813728	28813889	.	+	0	Parent=Os03t0712700-02
Chr03	irgsp1_rep	three_prime_UTR	28813890	28814342	.	+	.	Parent=Os03t0712700-02
Chr03	irgsp1_rep	mRNA	28816849	28820072	.	+	.	ID=Os03t0712700-03;Name=Os03t0712700-03;Locus_id=Os03g0712700;Oryzabase Gene Symbol Synonym(s)=PFP%2C OscPGM%2C cPGM;Oryzabase Gene Name Synonym(s)=fructose-6-phosphate 1-phosphotransferase%2C cytosolic phosphoglucomutase%2C "phosphoglucomutase%2C cytoplasmic 2";Note=Similar to Phosphoglucomutase.;Transcript_evidence=AK062105 (DDBJ%2C Best hit);ORF_evidence=A5HSI1 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: intramolecular transferase activity%2C phosphotransferases (GO:0016868);InterPro=Alpha-D-phosphohexomutase superfamily (IPR005841),Alpha-D-phosphohexomutase%2C C-terminal (IPR005843),Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain II (IPR005845),Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain III (IPR005846),Alpha-D-phosphohexomutase%2C alpha/beta/alpha I/II/III (IPR016055);NIAS_FLcDNA=001-045-B01;Oryzabase=16764;Expression=AK062105;TENOR=Os03t0712700-03;KEGG=Os03t0712700-03 (EC:5.4.2.2)
Chr03	irgsp1_rep	CDS	28816849	28816947	.	+	0	Parent=Os03t0712700-03
Chr03	irgsp1_rep	CDS	28817026	28817180	.	+	0	Parent=Os03t0712700-03
Chr03	irgsp1_rep	CDS	28817266	28817361	.	+	1	Parent=Os03t0712700-03
Chr03	irgsp1_rep	CDS	28818115	28818178	.	+	1	Parent=Os03t0712700-03
Chr03	irgsp1_rep	CDS	28818253	28818334	.	+	0	Parent=Os03t0712700-03
Chr03	irgsp1_rep	CDS	28818643	28818818	.	+	2	Parent=Os03t0712700-03
Chr03	irgsp1_rep	CDS	28818907	28818983	.	+	0	Parent=Os03t0712700-03
Chr03	irgsp1_rep	CDS	28819242	28819374	.	+	1	Parent=Os03t0712700-03
Chr03	irgsp1_rep	CDS	28819544	28819660	.	+	0	Parent=Os03t0712700-03
Chr03	irgsp1_rep	CDS	28819775	28819846	.	+	0	Parent=Os03t0712700-03
Chr03	irgsp1_rep	three_prime_UTR	28819847	28820072	.	+	.	Parent=Os03t0712700-03
Chr03	irgsp1_rep	mRNA	28818642	28820087	.	-	.	ID=Os03t0712733-00;Name=Os03t0712733-00;Locus_id=Os03g0712733;Note=Hypothetical gene.;Transcript_evidence=BT016600 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0712733-00
Chr03	irgsp1_rep	five_prime_UTR	28819840	28820087	.	-	.	Parent=Os03t0712733-00
Chr03	irgsp1_rep	CDS	28819759	28819839	.	-	0	Parent=Os03t0712733-00
Chr03	irgsp1_rep	CDS	28819543	28819648	.	-	0	Parent=Os03t0712733-00
Chr03	irgsp1_rep	CDS	28819261	28819373	.	-	2	Parent=Os03t0712733-00
Chr03	irgsp1_rep	three_prime_UTR	28819229	28819260	.	-	.	Parent=Os03t0712733-00
Chr03	irgsp1_rep	three_prime_UTR	28818905	28818970	.	-	.	Parent=Os03t0712733-00
Chr03	irgsp1_rep	three_prime_UTR	28818642	28818816	.	-	.	Parent=Os03t0712733-00
Chr03	irgsp1_rep	mRNA	28822424	28826321	.	-	.	ID=Os03t0712800-02;Name=Os03t0712800-02;Locus_id=Os03g0712800;RAP-DB Gene Symbol Synonym(s)=OsGS1%3B3;RAP-DB Gene Name Synonym(s)=cytosolic glutamine synthetase 1%3B3;Oryzabase Gene Symbol Synonym(s)=OsGLN1%3B3%2C GLN1%3B3%2C OsGS1%3B3%2C GS1%3B3;Oryzabase Gene Name Synonym(s)=cytosolic glutamine synthase 3%2C cytosolic glutamine synthethase 1%3B3%2C GLUTAMINE SYNTHETASE 1%3B3%2C glutamine synthetase 1%3B3;Note=Cytosolic glutamine synthetase;Transcript_evidence=AK063913,AK099290;ORF_evidence=Q4W8D0;GO=Biological Process: glutamine biosynthetic process (GO:0006542),Biological Process: nitrogen compound metabolic process (GO:0006807),Molecular Function: catalytic activity (GO:0003824),Molecular Function: glutamate-ammonia ligase activity (GO:0004356);InterPro=Glutamine synthetase%2C N-terminal domain superfamily (IPR036651),Glutamine synthetase/guanido kinase%2C catalytic domain (IPR014746),Glutamine synthetase%2C beta-Grasp domain (IPR008147),Glutamine synthetase%2C catalytic domain (IPR008146),Glutamine synthetase%2C N-terminal conserved site (IPR027302),Glutamine synthetase%2C glycine-rich site (IPR027303);NIAS_FLcDNA=001-123-A09,J023127P21;Manual Curation=July 10%2C 2018;Literature_PMID=15918879;Oryzabase=9310;Expression=AK063913;TENOR=Os03t0712800-02;KEGG=Os03t0712800-02 (EC:6.3.1.2)
Chr03	irgsp1_rep	five_prime_UTR	28826202	28826321	.	-	.	Parent=Os03t0712800-02
Chr03	irgsp1_rep	CDS	28826122	28826201	.	-	0	Parent=Os03t0712800-02
Chr03	irgsp1_rep	CDS	28825521	28825560	.	-	1	Parent=Os03t0712800-02
Chr03	irgsp1_rep	CDS	28825288	28825391	.	-	0	Parent=Os03t0712800-02
Chr03	irgsp1_rep	CDS	28825152	28825200	.	-	1	Parent=Os03t0712800-02
Chr03	irgsp1_rep	CDS	28824945	28825051	.	-	0	Parent=Os03t0712800-02
Chr03	irgsp1_rep	CDS	28824777	28824864	.	-	1	Parent=Os03t0712800-02
Chr03	irgsp1_rep	CDS	28824349	28824477	.	-	0	Parent=Os03t0712800-02
Chr03	irgsp1_rep	CDS	28824167	28824241	.	-	0	Parent=Os03t0712800-02
Chr03	irgsp1_rep	CDS	28823946	28823999	.	-	0	Parent=Os03t0712800-02
Chr03	irgsp1_rep	CDS	28823805	28823842	.	-	0	Parent=Os03t0712800-02
Chr03	irgsp1_rep	CDS	28823541	28823700	.	-	1	Parent=Os03t0712800-02
Chr03	irgsp1_rep	CDS	28822914	28822974	.	-	0	Parent=Os03t0712800-02
Chr03	irgsp1_rep	CDS	28822686	28822813	.	-	2	Parent=Os03t0712800-02
Chr03	irgsp1_rep	three_prime_UTR	28822424	28822685	.	-	.	Parent=Os03t0712800-02
Chr03	irgsp1_rep	mRNA	28832082	28836823	.	+	.	ID=Os03t0712900-01;Name=Os03t0712900-01;Locus_id=Os03g0712900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK103803 (DDBJ%2C Best hit);ORF_evidence=Q10DZ7 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033146J16;TENOR=Os03t0712900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	28832082	28832082	.	+	.	Parent=Os03t0712900-01
Chr03	irgsp1_rep	CDS	28832083	28833141	.	+	0	Parent=Os03t0712900-01
Chr03	irgsp1_rep	three_prime_UTR	28833142	28833224	.	+	.	Parent=Os03t0712900-01
Chr03	irgsp1_rep	three_prime_UTR	28834170	28834477	.	+	.	Parent=Os03t0712900-01
Chr03	irgsp1_rep	three_prime_UTR	28834577	28834756	.	+	.	Parent=Os03t0712900-01
Chr03	irgsp1_rep	three_prime_UTR	28836537	28836823	.	+	.	Parent=Os03t0712900-01
Chr03	irgsp1_rep	mRNA	28839277	28844785	.	+	.	ID=Os03t0713000-00;Name=Os03t0713000-00;Locus_id=Os03g0713000;Note=Similar to Chloroplast threonine deaminase 1.;Transcript_evidence=tplb0062e09 (Wheat FLcDNA);ORF_evidence=A0FKE6 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: metabolic process (GO:0008152),Biological Process: isoleucine biosynthetic process (GO:0009097),Molecular Function: catalytic activity (GO:0003824),Molecular Function: L-threonine ammonia-lyase activity (GO:0004794),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Serine/threonine dehydratase%2C pyridoxal-phosphate-binding site (IPR000634),Threonine dehydratase%2C C-terminal (IPR001721),Pyridoxal phosphate-dependent enzyme%2C beta subunit (IPR001926),Threonine dehydratase I (IPR005787);TENOR=Os03t0713000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	28839277	28839699	.	+	0	Parent=Os03t0713000-00
Chr03	irgsp1_rep	CDS	28841228	28841407	.	+	0	Parent=Os03t0713000-00
Chr03	irgsp1_rep	CDS	28841508	28841777	.	+	0	Parent=Os03t0713000-00
Chr03	irgsp1_rep	CDS	28842156	28842362	.	+	0	Parent=Os03t0713000-00
Chr03	irgsp1_rep	CDS	28842810	28843058	.	+	0	Parent=Os03t0713000-00
Chr03	irgsp1_rep	CDS	28843138	28843211	.	+	0	Parent=Os03t0713000-00
Chr03	irgsp1_rep	CDS	28843403	28843520	.	+	1	Parent=Os03t0713000-00
Chr03	irgsp1_rep	CDS	28844026	28844160	.	+	0	Parent=Os03t0713000-00
Chr03	irgsp1_rep	CDS	28844418	28844570	.	+	0	Parent=Os03t0713000-00
Chr03	irgsp1_rep	three_prime_UTR	28844571	28844785	.	+	.	Parent=Os03t0713000-00
Chr03	irgsp1_rep	mRNA	28846846	28852545	.	+	.	ID=Os03t0713100-01;Name=Os03t0713100-01;Locus_id=Os03g0713100;Note=Similar to dynamin-related protein 1C.;Transcript_evidence=AK243639 (DDBJ%2C Best hit);ORF_evidence=NP_001151519.1 (RefSeq);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Dynamin central domain (IPR000375),Dynamin%2C GTPase domain (IPR001401),Dynamin GTPase effector (IPR003130),Dynamin%2C GTPase region%2C conserved site (IPR019762),GTPase effector domain%2C GED (IPR020850),Dynamin (IPR022812);NIAS_FLcDNA=J100087M13;TENOR=Os03t0713100-01;KEGG=Os03t0713100-01 (EC:3.6.5.5)
Chr03	irgsp1_rep	five_prime_UTR	28846846	28847000	.	+	.	Parent=Os03t0713100-01
Chr03	irgsp1_rep	CDS	28847001	28847138	.	+	0	Parent=Os03t0713100-01
Chr03	irgsp1_rep	CDS	28847251	28847314	.	+	0	Parent=Os03t0713100-01
Chr03	irgsp1_rep	CDS	28847423	28847527	.	+	2	Parent=Os03t0713100-01
Chr03	irgsp1_rep	CDS	28847948	28848049	.	+	2	Parent=Os03t0713100-01
Chr03	irgsp1_rep	CDS	28848741	28848791	.	+	2	Parent=Os03t0713100-01
Chr03	irgsp1_rep	CDS	28848873	28848934	.	+	2	Parent=Os03t0713100-01
Chr03	irgsp1_rep	CDS	28849270	28849360	.	+	0	Parent=Os03t0713100-01
Chr03	irgsp1_rep	CDS	28849517	28849581	.	+	2	Parent=Os03t0713100-01
Chr03	irgsp1_rep	CDS	28849659	28849853	.	+	0	Parent=Os03t0713100-01
Chr03	irgsp1_rep	CDS	28849952	28850071	.	+	0	Parent=Os03t0713100-01
Chr03	irgsp1_rep	CDS	28850236	28850306	.	+	0	Parent=Os03t0713100-01
Chr03	irgsp1_rep	CDS	28850445	28850670	.	+	1	Parent=Os03t0713100-01
Chr03	irgsp1_rep	CDS	28851080	28851130	.	+	0	Parent=Os03t0713100-01
Chr03	irgsp1_rep	CDS	28851235	28851463	.	+	0	Parent=Os03t0713100-01
Chr03	irgsp1_rep	CDS	28851746	28851885	.	+	2	Parent=Os03t0713100-01
Chr03	irgsp1_rep	CDS	28852133	28852258	.	+	0	Parent=Os03t0713100-01
Chr03	irgsp1_rep	three_prime_UTR	28852259	28852545	.	+	.	Parent=Os03t0713100-01
Chr03	irgsp1_rep	mRNA	28846995	28851885	.	-	.	ID=Os03t0713150-00;Name=Os03t0713150-00;Locus_id=Os03g0713150;Note=Hypothetical protein.;Transcript_evidence=tplb0034e16 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0713150-00
Chr03	irgsp1_rep	five_prime_UTR	28851766	28851885	.	-	.	Parent=Os03t0713150-00
Chr03	irgsp1_rep	five_prime_UTR	28851191	28851479	.	-	.	Parent=Os03t0713150-00
Chr03	irgsp1_rep	five_prime_UTR	28850405	28850678	.	-	.	Parent=Os03t0713150-00
Chr03	irgsp1_rep	five_prime_UTR	28849946	28850101	.	-	.	Parent=Os03t0713150-00
Chr03	irgsp1_rep	five_prime_UTR	28849663	28849848	.	-	.	Parent=Os03t0713150-00
Chr03	irgsp1_rep	five_prime_UTR	28849494	28849589	.	-	.	Parent=Os03t0713150-00
Chr03	irgsp1_rep	five_prime_UTR	28849227	28849335	.	-	.	Parent=Os03t0713150-00
Chr03	irgsp1_rep	five_prime_UTR	28848749	28848808	.	-	.	Parent=Os03t0713150-00
Chr03	irgsp1_rep	five_prime_UTR	28848024	28848055	.	-	.	Parent=Os03t0713150-00
Chr03	irgsp1_rep	CDS	28847953	28848023	.	-	0	Parent=Os03t0713150-00
Chr03	irgsp1_rep	CDS	28847353	28847532	.	-	1	Parent=Os03t0713150-00
Chr03	irgsp1_rep	CDS	28846995	28847139	.	-	1	Parent=Os03t0713150-00
Chr03	irgsp1_rep	mRNA	28852502	28853655	.	-	.	ID=Os03t0713200-01;Name=Os03t0713200-01;Locus_id=Os03g0713200;Note=Conserved hypothetical protein.;Transcript_evidence=AK060373 (DDBJ%2C Best hit);ORF_evidence=A2XLC2 (UniProt);NIAS_FLcDNA=001-009-C05;Expression=AK060373;TENOR=Os03t0713200-01;KEGG=Os03t0713200-01
Chr03	irgsp1_rep	five_prime_UTR	28853619	28853655	.	-	.	Parent=Os03t0713200-01
Chr03	irgsp1_rep	CDS	28853280	28853618	.	-	0	Parent=Os03t0713200-01
Chr03	irgsp1_rep	CDS	28852625	28852798	.	-	0	Parent=Os03t0713200-01
Chr03	irgsp1_rep	three_prime_UTR	28852502	28852624	.	-	.	Parent=Os03t0713200-01
Chr03	irgsp1_rep	mRNA	28855867	28860136	.	-	.	ID=Os03t0713400-01;Name=Os03t0713400-01;Locus_id=Os03g0713400;Oryzabase Gene Name Synonym(s)=NADH dehydrogenase (ubiquinone) 78K;Note=Similar to NADH-ubiquinone oxidoreductase 75 kDa subunit%2C mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-75KD) (CI-75KD) (76 kDa mitochondrial complex I subunit).;Transcript_evidence=AK071307 (DDBJ%2C Best hit);ORF_evidence=C5WN22 (UniProt);GO=Biological Process: ATP synthesis coupled electron transport (GO:0042773),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: membrane (GO:0016020),Molecular Function: NADH dehydrogenase (ubiquinone) activity (GO:0008137),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on NADH or NADPH (GO:0016651),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=NADH:ubiquinone oxidoreductase%2C 75kDa subunit%2C conserved site (IPR000283),Ferredoxin (IPR001041),Molybdopterin oxidoreductase (IPR006656),NADH:ubiquinone oxidoreductase%2C subunit G (IPR010228),Beta-grasp fold%2C ferredoxin-type (IPR012675),NADH-quinone oxidoreductase%2C chain G%2C C-terminal (IPR015405),NADH:ubiquinone oxidoreductase%2C subunit G%2C iron-sulphur binding (IPR019574);NIAS_FLcDNA=J023087M21;Oryzabase=17722;Expression=AK071307;TENOR=Os03t0713400-01;KEGG=Os03t0713400-01 (EC:1.6.5.3%2C EC:1.6.99.3)
Chr03	irgsp1_rep	five_prime_UTR	28860050	28860136	.	-	.	Parent=Os03t0713400-01
Chr03	irgsp1_rep	CDS	28859623	28860049	.	-	0	Parent=Os03t0713400-01
Chr03	irgsp1_rep	CDS	28859120	28859366	.	-	2	Parent=Os03t0713400-01
Chr03	irgsp1_rep	CDS	28858522	28858816	.	-	1	Parent=Os03t0713400-01
Chr03	irgsp1_rep	CDS	28857496	28857870	.	-	0	Parent=Os03t0713400-01
Chr03	irgsp1_rep	CDS	28856053	28856952	.	-	0	Parent=Os03t0713400-01
Chr03	irgsp1_rep	three_prime_UTR	28855867	28856052	.	-	.	Parent=Os03t0713400-01
Chr03	irgsp1_rep	mRNA	28855806	28857671	.	-	.	ID=Os03t0713400-02;Name=Os03t0713400-02;Locus_id=Os03g0713400;Oryzabase Gene Name Synonym(s)=NADH dehydrogenase (ubiquinone) 78K;Note=Similar to NADH-ubiquinone oxidoreductase 75 kDa subunit.;Transcript_evidence=AK058713 (DDBJ%2C Best hit);ORF_evidence=C5WN22 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on NADH or NADPH (GO:0016651),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=Molybdopterin oxidoreductase (IPR006656),NADH-quinone oxidoreductase%2C chain G%2C C-terminal (IPR015405);NIAS_FLcDNA=001-019-D09;Oryzabase=17722;Expression=AK058713;TENOR=Os03t0713400-02;KEGG=Os03t0713400-02 (EC:1.6.5.3%2C EC:1.6.99.3)
Chr03	irgsp1_rep	five_prime_UTR	28857670	28857671	.	-	.	Parent=Os03t0713400-02
Chr03	irgsp1_rep	CDS	28857496	28857669	.	-	0	Parent=Os03t0713400-02
Chr03	irgsp1_rep	CDS	28856053	28856952	.	-	0	Parent=Os03t0713400-02
Chr03	irgsp1_rep	three_prime_UTR	28855806	28856052	.	-	.	Parent=Os03t0713400-02
Chr03	irgsp1_rep	mRNA	28855801	28856907	.	-	.	ID=Os03t0713400-03;Name=Os03t0713400-03;Locus_id=Os03g0713400;Oryzabase Gene Name Synonym(s)=NADH dehydrogenase (ubiquinone) 78K;Note=Similar to NADH-ubiquinone oxidoreductase 75 kDa subunit.;Transcript_evidence=AK072556 (DDBJ%2C Best hit);ORF_evidence=C5WN22 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on NADH or NADPH (GO:0016651),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=Molybdopterin oxidoreductase (IPR006656),NADH-quinone oxidoreductase%2C chain G%2C C-terminal (IPR015405);NIAS_FLcDNA=J023130E21;Oryzabase=17722;Expression=AK072556;TENOR=Os03t0713400-03;KEGG=Os03t0713400-03 (EC:1.6.5.3%2C EC:1.6.99.3)
Chr03	irgsp1_rep	CDS	28856053	28856907	.	-	0	Parent=Os03t0713400-03
Chr03	irgsp1_rep	three_prime_UTR	28855801	28856052	.	-	.	Parent=Os03t0713400-03
Chr03	irgsp1_rep	mRNA	28859516	28862894	.	+	.	ID=Os03t0713500-00;Name=Os03t0713500-00;Locus_id=Os03g0713500;CGSNL Gene Symbol=MKK10-3;CGSNL Gene Name=MITOGEN-ACTIVATED PROTEIN KINASE KINASE 10-3;Oryzabase Gene Symbol Synonym(s)=MPKK10.3;Note=Similar to Mitogen-activated protein kinase kinase 10-2.;Transcript_evidence=GU942956 (DDBJ);ORF_evidence=A2XE35 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=8836;TENOR=Os03t0713500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	28859516	28859945	.	+	0	Parent=Os03t0713500-00
Chr03	irgsp1_rep	CDS	28861933	28862894	.	+	2	Parent=Os03t0713500-00
Chr03	irgsp1_rep	mRNA	28861902	28862720	.	-	.	ID=Os03t0713550-00;Name=Os03t0713550-00;Locus_id=Os03g0713550;Note=Hypothetical protein.;Transcript_evidence=BT054677 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0713550-00
Chr03	irgsp1_rep	CDS	28861902	28862720	.	-	0	Parent=Os03t0713550-00
Chr03	irgsp1_rep	mRNA	28869066	28873196	.	-	.	ID=Os03t0713600-01;Name=Os03t0713600-01;Locus_id=Os03g0713600;RAP-DB Gene Symbol Synonym(s)=PIBP1;RAP-DB Gene Name Synonym(s)=PigmR-INTERACTING and BLAST RESISTANCE PROTEIN 1;CGSNL Gene Symbol=PIBP1;CGSNL Gene Name=PIGMR-INTERACTING AND BLAST RESISTANCE PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsPIBP1;Oryzabase Gene Name Synonym(s)=PigmR-INTERACTING and BLAST RESISTANCE PROTEIN 1;Note=RRM (RNA recognition motif) protein%2C Transcription factor%2C Regulation of blast resistance;Transcript_evidence=AK074014;ORF_evidence=Q8W319;GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA-binding domain superfamily (IPR035979),Nucleotide-binding alpha-beta plait domain superfamily (IPR012677),RNA recognition motif domain (IPR000504);NIAS_FLcDNA=J033073M17;Manual Curation=February 5%2C 2020;Literature_PMID=30975460;Oryzabase=23325;Expression=AK074014;TENOR=Os03t0713600-01;KEGG=Os03t0713600-01;Subcellular location=nucleus (GO:0005634), cell periphery (GO:0071944)
Chr03	irgsp1_rep	five_prime_UTR	28872924	28873196	.	-	.	Parent=Os03t0713600-01
Chr03	irgsp1_rep	CDS	28872918	28872923	.	-	0	Parent=Os03t0713600-01
Chr03	irgsp1_rep	CDS	28871103	28871206	.	-	0	Parent=Os03t0713600-01
Chr03	irgsp1_rep	CDS	28870941	28871016	.	-	1	Parent=Os03t0713600-01
Chr03	irgsp1_rep	CDS	28870679	28870762	.	-	0	Parent=Os03t0713600-01
Chr03	irgsp1_rep	CDS	28869444	28870028	.	-	0	Parent=Os03t0713600-01
Chr03	irgsp1_rep	three_prime_UTR	28869066	28869443	.	-	.	Parent=Os03t0713600-01
Chr03	irgsp1_rep	mRNA	28890277	28891273	.	+	.	ID=Os03t0714100-01;Name=Os03t0714100-01;Locus_id=Os03g0714100;Note=Conserved hypothetical protein.;Transcript_evidence=AK241691 (DDBJ%2C Best hit);ORF_evidence=NP_001173615.1 (RefSeq);NIAS_FLcDNA=J065195H08;TENOR=Os03t0714100-01;KEGG=Os03t0714100-01
Chr03	irgsp1_rep	five_prime_UTR	28890277	28890460	.	+	.	Parent=Os03t0714100-01
Chr03	irgsp1_rep	CDS	28890461	28890759	.	+	0	Parent=Os03t0714100-01
Chr03	irgsp1_rep	CDS	28890854	28890998	.	+	1	Parent=Os03t0714100-01
Chr03	irgsp1_rep	three_prime_UTR	28890999	28891273	.	+	.	Parent=Os03t0714100-01
Chr03	irgsp1_rep	mRNA	28901067	28906911	.	+	.	ID=Os03t0714400-01;Name=Os03t0714400-01;Locus_id=Os03g0714400;Note=Similar to ATP binding protein.;Transcript_evidence=AK242594 (DDBJ%2C Best hit);ORF_evidence=B4F8I8 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=Uncharacterised protein family%2C ATP binding (IPR004130);NIAS_FLcDNA=J090012I09;TENOR=Os03t0714400-01;KEGG=Os03t0714400-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	28901067	28901259	.	+	.	Parent=Os03t0714400-01
Chr03	irgsp1_rep	CDS	28901260	28901304	.	+	0	Parent=Os03t0714400-01
Chr03	irgsp1_rep	CDS	28901776	28901884	.	+	0	Parent=Os03t0714400-01
Chr03	irgsp1_rep	CDS	28901958	28902039	.	+	2	Parent=Os03t0714400-01
Chr03	irgsp1_rep	CDS	28903088	28903173	.	+	1	Parent=Os03t0714400-01
Chr03	irgsp1_rep	CDS	28903466	28903569	.	+	2	Parent=Os03t0714400-01
Chr03	irgsp1_rep	CDS	28903677	28903807	.	+	0	Parent=Os03t0714400-01
Chr03	irgsp1_rep	CDS	28903882	28903975	.	+	1	Parent=Os03t0714400-01
Chr03	irgsp1_rep	CDS	28905272	28905327	.	+	0	Parent=Os03t0714400-01
Chr03	irgsp1_rep	CDS	28906335	28906428	.	+	1	Parent=Os03t0714400-01
Chr03	irgsp1_rep	three_prime_UTR	28906429	28906911	.	+	.	Parent=Os03t0714400-01
Chr03	irgsp1_rep	mRNA	28959037	28964413	.	+	.	ID=Os03t0715332-00;Name=Os03t0715332-00;Locus_id=Os03g0715332;Note=Hypothetical conserved gene.;Transcript_evidence=CT828621 (DDBJ%2C Best hit);ORF_evidence=Q8W337 (UniProt);TENOR=Os03t0715332-00;KEGG=Os03t0715332-00
Chr03	irgsp1_rep	CDS	28959037	28959074	.	+	0	Parent=Os03t0715332-00
Chr03	irgsp1_rep	CDS	28963845	28964013	.	+	1	Parent=Os03t0715332-00
Chr03	irgsp1_rep	three_prime_UTR	28964014	28964413	.	+	.	Parent=Os03t0715332-00
Chr03	irgsp1_rep	mRNA	28959103	28963461	.	+	.	ID=Os03t0715400-01;Name=Os03t0715400-01;Locus_id=Os03g0715400;Note=Membrane protein%2CTapt1/CMV receptor domain containing protein.;Transcript_evidence=AK101931 (DDBJ%2C Best hit);ORF_evidence=B9FB76 (UniProt);InterPro=Membrane protein%2CTapt1/CMV receptor (IPR008010);NIAS_FLcDNA=J033073E22;Expression=AK101931;TENOR=Os03t0715400-01;KEGG=Os03t0715400-01
Chr03	irgsp1_rep	five_prime_UTR	28959103	28959190	.	+	.	Parent=Os03t0715400-01
Chr03	irgsp1_rep	CDS	28959191	28959746	.	+	0	Parent=Os03t0715400-01
Chr03	irgsp1_rep	CDS	28960302	28960453	.	+	2	Parent=Os03t0715400-01
Chr03	irgsp1_rep	CDS	28961194	28961297	.	+	0	Parent=Os03t0715400-01
Chr03	irgsp1_rep	CDS	28961640	28961728	.	+	1	Parent=Os03t0715400-01
Chr03	irgsp1_rep	CDS	28961819	28961892	.	+	2	Parent=Os03t0715400-01
Chr03	irgsp1_rep	CDS	28961967	28962117	.	+	0	Parent=Os03t0715400-01
Chr03	irgsp1_rep	CDS	28962265	28962432	.	+	2	Parent=Os03t0715400-01
Chr03	irgsp1_rep	CDS	28962801	28962898	.	+	2	Parent=Os03t0715400-01
Chr03	irgsp1_rep	CDS	28962987	28963109	.	+	0	Parent=Os03t0715400-01
Chr03	irgsp1_rep	CDS	28963191	28963214	.	+	0	Parent=Os03t0715400-01
Chr03	irgsp1_rep	three_prime_UTR	28963215	28963461	.	+	.	Parent=Os03t0715400-01
Chr03	irgsp1_rep	mRNA	28964321	28975276	.	-	.	ID=Os03t0715500-01;Name=Os03t0715500-01;Locus_id=Os03g0715500;Oryzabase Gene Symbol Synonym(s)=OsTVLP1;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=AK071327 (DDBJ%2C Best hit);ORF_evidence=Q307Q8 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Molecular Function: small GTPase regulator activity (GO:0005083),Molecular Function: binding (GO:0005488);InterPro=Clathrin%2C heavy chain/VPS%2C 7-fold repeat (IPR000547),Citron-like (IPR001180),Tetratricopeptide-like helical (IPR011990),Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1 (IPR019452),Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2 (IPR019453);NIAS_FLcDNA=J023089C05;Oryzabase=15766;Expression=AK071327;TENOR=Os03t0715500-01;KEGG=Os03t0715500-01
Chr03	irgsp1_rep	five_prime_UTR	28975113	28975276	.	-	.	Parent=Os03t0715500-01
Chr03	irgsp1_rep	CDS	28974701	28975112	.	-	0	Parent=Os03t0715500-01
Chr03	irgsp1_rep	CDS	28973409	28973620	.	-	2	Parent=Os03t0715500-01
Chr03	irgsp1_rep	CDS	28973046	28973177	.	-	0	Parent=Os03t0715500-01
Chr03	irgsp1_rep	CDS	28972831	28972974	.	-	0	Parent=Os03t0715500-01
Chr03	irgsp1_rep	CDS	28971899	28972011	.	-	0	Parent=Os03t0715500-01
Chr03	irgsp1_rep	CDS	28970987	28971407	.	-	1	Parent=Os03t0715500-01
Chr03	irgsp1_rep	CDS	28968999	28969328	.	-	0	Parent=Os03t0715500-01
Chr03	irgsp1_rep	CDS	28968313	28968534	.	-	0	Parent=Os03t0715500-01
Chr03	irgsp1_rep	CDS	28967866	28968108	.	-	0	Parent=Os03t0715500-01
Chr03	irgsp1_rep	CDS	28967180	28967605	.	-	0	Parent=Os03t0715500-01
Chr03	irgsp1_rep	CDS	28966751	28966849	.	-	0	Parent=Os03t0715500-01
Chr03	irgsp1_rep	CDS	28965821	28966021	.	-	0	Parent=Os03t0715500-01
Chr03	irgsp1_rep	three_prime_UTR	28965805	28965820	.	-	.	Parent=Os03t0715500-01
Chr03	irgsp1_rep	three_prime_UTR	28964321	28964613	.	-	.	Parent=Os03t0715500-01
Chr03	irgsp1_rep	mRNA	28964621	28975266	.	-	.	ID=Os03t0715500-02;Name=Os03t0715500-02;Locus_id=Os03g0715500;Oryzabase Gene Symbol Synonym(s)=OsTVLP1;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=AK120055 (DDBJ%2C Best hit);ORF_evidence=Q307Q8 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Molecular Function: small GTPase regulator activity (GO:0005083),Molecular Function: binding (GO:0005488);InterPro=Clathrin%2C heavy chain/VPS%2C 7-fold repeat (IPR000547),Citron-like (IPR001180),Tetratricopeptide-like helical (IPR011990),Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1 (IPR019452),Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2 (IPR019453);NIAS_FLcDNA=J013000O06;Oryzabase=15766;Expression=AK120055;TENOR=Os03t0715500-02;KEGG=Os03t0715500-02
Chr03	irgsp1_rep	five_prime_UTR	28975113	28975266	.	-	.	Parent=Os03t0715500-02
Chr03	irgsp1_rep	CDS	28974701	28975112	.	-	0	Parent=Os03t0715500-02
Chr03	irgsp1_rep	CDS	28973409	28973620	.	-	2	Parent=Os03t0715500-02
Chr03	irgsp1_rep	CDS	28973046	28973177	.	-	0	Parent=Os03t0715500-02
Chr03	irgsp1_rep	CDS	28972831	28972974	.	-	0	Parent=Os03t0715500-02
Chr03	irgsp1_rep	CDS	28971899	28972011	.	-	0	Parent=Os03t0715500-02
Chr03	irgsp1_rep	CDS	28970987	28971407	.	-	1	Parent=Os03t0715500-02
Chr03	irgsp1_rep	CDS	28968999	28969328	.	-	0	Parent=Os03t0715500-02
Chr03	irgsp1_rep	CDS	28968313	28968534	.	-	0	Parent=Os03t0715500-02
Chr03	irgsp1_rep	CDS	28967866	28968108	.	-	0	Parent=Os03t0715500-02
Chr03	irgsp1_rep	CDS	28967180	28967605	.	-	0	Parent=Os03t0715500-02
Chr03	irgsp1_rep	CDS	28966751	28966849	.	-	0	Parent=Os03t0715500-02
Chr03	irgsp1_rep	CDS	28965821	28966021	.	-	0	Parent=Os03t0715500-02
Chr03	irgsp1_rep	three_prime_UTR	28965805	28965820	.	-	.	Parent=Os03t0715500-02
Chr03	irgsp1_rep	three_prime_UTR	28964621	28965085	.	-	.	Parent=Os03t0715500-02
Chr03	irgsp1_rep	mRNA	28964618	28973595	.	-	.	ID=Os03t0715500-03;Name=Os03t0715500-03;Locus_id=Os03g0715500;Oryzabase Gene Symbol Synonym(s)=OsTVLP1;Note=Similar to TVLP1.;Transcript_evidence=AK068447 (DDBJ%2C Best hit);ORF_evidence=Q307Q8 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Molecular Function: small GTPase regulator activity (GO:0005083),Molecular Function: binding (GO:0005488);InterPro=Clathrin%2C heavy chain/VPS%2C 7-fold repeat (IPR000547),Citron-like (IPR001180),Tetratricopeptide-like helical (IPR011990),Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1 (IPR019452),Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2 (IPR019453);NIAS_FLcDNA=J013154L09;Oryzabase=15766;Expression=AK068447;TENOR=Os03t0715500-03;KEGG=Os03t0715500-03
Chr03	irgsp1_rep	five_prime_UTR	28973595	28973595	.	-	.	Parent=Os03t0715500-03
Chr03	irgsp1_rep	CDS	28973409	28973594	.	-	0	Parent=Os03t0715500-03
Chr03	irgsp1_rep	CDS	28973046	28973177	.	-	0	Parent=Os03t0715500-03
Chr03	irgsp1_rep	CDS	28972831	28972974	.	-	0	Parent=Os03t0715500-03
Chr03	irgsp1_rep	CDS	28971899	28972011	.	-	0	Parent=Os03t0715500-03
Chr03	irgsp1_rep	CDS	28970987	28971407	.	-	1	Parent=Os03t0715500-03
Chr03	irgsp1_rep	CDS	28968999	28969328	.	-	0	Parent=Os03t0715500-03
Chr03	irgsp1_rep	CDS	28968313	28968534	.	-	0	Parent=Os03t0715500-03
Chr03	irgsp1_rep	CDS	28967866	28968108	.	-	0	Parent=Os03t0715500-03
Chr03	irgsp1_rep	CDS	28967180	28967605	.	-	0	Parent=Os03t0715500-03
Chr03	irgsp1_rep	CDS	28966751	28966849	.	-	0	Parent=Os03t0715500-03
Chr03	irgsp1_rep	CDS	28965821	28966021	.	-	0	Parent=Os03t0715500-03
Chr03	irgsp1_rep	three_prime_UTR	28965805	28965820	.	-	.	Parent=Os03t0715500-03
Chr03	irgsp1_rep	three_prime_UTR	28964618	28965085	.	-	.	Parent=Os03t0715500-03
Chr03	irgsp1_rep	mRNA	28977570	28980305	.	+	.	ID=Os03t0715600-01;Name=Os03t0715600-01;Locus_id=Os03g0715600;Note=Similar to EF hand family protein.;Transcript_evidence=AK241751 (DDBJ%2C Best hit);ORF_evidence=Q10DX0 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J065203L09;TENOR=Os03t0715600-01;KEGG=Os03t0715600-01
Chr03	irgsp1_rep	five_prime_UTR	28977570	28977674	.	+	.	Parent=Os03t0715600-01
Chr03	irgsp1_rep	CDS	28977675	28977735	.	+	0	Parent=Os03t0715600-01
Chr03	irgsp1_rep	CDS	28978020	28978146	.	+	2	Parent=Os03t0715600-01
Chr03	irgsp1_rep	CDS	28978233	28978663	.	+	1	Parent=Os03t0715600-01
Chr03	irgsp1_rep	CDS	28979174	28979334	.	+	2	Parent=Os03t0715600-01
Chr03	irgsp1_rep	CDS	28979969	28980037	.	+	0	Parent=Os03t0715600-01
Chr03	irgsp1_rep	three_prime_UTR	28980038	28980305	.	+	.	Parent=Os03t0715600-01
Chr03	irgsp1_rep	mRNA	28980485	28980898	.	+	.	ID=Os03t0715900-00;Name=Os03t0715900-00;Locus_id=Os03g0715900;Note=Conserved hypothetical protein.;Transcript_evidence=EU946899 (DDBJ);ORF_evidence=Q8W340 (UniProt);TENOR=Os03t0715900-00
Chr03	irgsp1_rep	CDS	28980485	28980898	.	+	0	Parent=Os03t0715900-00
Chr03	irgsp1_rep	mRNA	28988409	28991862	.	-	.	ID=Os03t0716200-01;Name=Os03t0716200-01;Locus_id=Os03g0716200;RAP-DB Gene Symbol Synonym(s)=TIP3;RAP-DB Gene Name Synonym(s)=TDR INTERACTING PROTEIN 3;CGSNL Gene Symbol=TIP3;CGSNL Gene Name=TDR INTERACTING PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsTIP3;Note=PHD-finger transcription factor%2C Regulation of Ubisch bodies and pollen wall formation;Transcript_evidence=AK287630;ORF_evidence=Q8W342;InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C PHD-finger (IPR019787),Zinc finger%2C PHD-type%2C conserved site (IPR019786);NIAS_FLcDNA=J065073I15;Manual Curation=August 29%2C 2019;Literature_PMID=31021015;Oryzabase=23292;TENOR=Os03t0716200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=nucleus (GO:0005634)
Chr03	irgsp1_rep	five_prime_UTR	28991846	28991862	.	-	.	Parent=Os03t0716200-01
Chr03	irgsp1_rep	CDS	28991380	28991845	.	-	0	Parent=Os03t0716200-01
Chr03	irgsp1_rep	CDS	28990501	28990747	.	-	2	Parent=Os03t0716200-01
Chr03	irgsp1_rep	CDS	28988840	28990220	.	-	1	Parent=Os03t0716200-01
Chr03	irgsp1_rep	three_prime_UTR	28988409	28988839	.	-	.	Parent=Os03t0716200-01
Chr03	irgsp1_rep	mRNA	29013349	29014095	.	+	.	ID=Os03t0716900-01;Name=Os03t0716900-01;Locus_id=Os03g0716900;Note=Hypothetical gene.;Transcript_evidence=AK107810 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-133-E12;Expression=AK107810;TENOR=Os03t0716900-01;KEGG=Os03t0716900-01
Chr03	irgsp1_rep	five_prime_UTR	29013349	29013349	.	+	.	Parent=Os03t0716900-01
Chr03	irgsp1_rep	CDS	29013350	29013676	.	+	0	Parent=Os03t0716900-01
Chr03	irgsp1_rep	three_prime_UTR	29013677	29014095	.	+	.	Parent=Os03t0716900-01
Chr03	irgsp1_rep	mRNA	29015980	29020045	.	-	.	ID=Os03t0717000-01;Name=Os03t0717000-01;Locus_id=Os03g0717000;CGSNL Gene Symbol=TMK;CGSNL Gene Name=TRANSMEMBRANE KINASE;Oryzabase Gene Symbol Synonym(s)=OsTMK;Oryzabase Gene Name Synonym(s)=transmembrane kinase;Note=Similar to TMK protein precursor.;Transcript_evidence=AK066295 (DDBJ%2C Best hit);ORF_evidence=Q10DW6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013060B13;Oryzabase=6299;Expression=AK066295;TENOR=Os03t0717000-01;KEGG=Os03t0717000-01
Chr03	irgsp1_rep	five_prime_UTR	29020044	29020045	.	-	.	Parent=Os03t0717000-01
Chr03	irgsp1_rep	CDS	29019932	29020043	.	-	0	Parent=Os03t0717000-01
Chr03	irgsp1_rep	CDS	29017626	29019512	.	-	2	Parent=Os03t0717000-01
Chr03	irgsp1_rep	CDS	29016403	29016932	.	-	2	Parent=Os03t0717000-01
Chr03	irgsp1_rep	three_prime_UTR	29015980	29016402	.	-	.	Parent=Os03t0717000-01
Chr03	irgsp1_rep	mRNA	29016208	29018757	.	-	.	ID=Os03t0717000-02;Name=Os03t0717000-02;Locus_id=Os03g0717000;CGSNL Gene Symbol=TMK;CGSNL Gene Name=TRANSMEMBRANE KINASE;Oryzabase Gene Symbol Synonym(s)=OsTMK;Oryzabase Gene Name Synonym(s)=transmembrane kinase;Note=Similar to TMK protein.;Transcript_evidence=AK062249 (DDBJ%2C Best hit);ORF_evidence=Q10DW6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-047-F10;Oryzabase=6299;Expression=AK062249;TENOR=Os03t0717000-02;KEGG=Os03t0717000-02
Chr03	irgsp1_rep	CDS	29017626	29018757	.	-	0	Parent=Os03t0717000-02
Chr03	irgsp1_rep	CDS	29016403	29016932	.	-	2	Parent=Os03t0717000-02
Chr03	irgsp1_rep	three_prime_UTR	29016208	29016402	.	-	.	Parent=Os03t0717000-02
Chr03	irgsp1_rep	mRNA	29028308	29030763	.	+	.	ID=Os03t0717200-00;Name=Os03t0717200-00;Locus_id=Os03g0717200;Note=CytoChrome b561 family protein.;Transcript_evidence=EU969254 (DDBJ);ORF_evidence=B6TW89 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=CytoChrome b561%2C eukaryote (IPR004877),CytoChrome b561/ferric reductase transmembrane (IPR006593);TENOR=Os03t0717200-00;KEGG=Os03t0717200-00
Chr03	irgsp1_rep	five_prime_UTR	29028308	29028312	.	+	.	Parent=Os03t0717200-00
Chr03	irgsp1_rep	CDS	29028313	29028489	.	+	0	Parent=Os03t0717200-00
Chr03	irgsp1_rep	CDS	29028656	29028704	.	+	0	Parent=Os03t0717200-00
Chr03	irgsp1_rep	CDS	29030303	29030763	.	+	2	Parent=Os03t0717200-00
Chr03	irgsp1_rep	mRNA	29039345	29045538	.	-	.	ID=Os03t0717600-01;Name=Os03t0717600-01;Locus_id=Os03g0717600;Note=Zinc finger%2C C2H2-type matrin domain containing protein.;Transcript_evidence=AK069120 (DDBJ%2C Best hit);ORF_evidence=NP_196234.3 (RefSeq);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2-type matrin (IPR000690),Splicing factor SF3a60 binding domain (IPR021966),Domain of unknown function DUF3449 (IPR024598);NIAS_FLcDNA=J023004K20;Expression=AK069120;TENOR=Os03t0717600-01;KEGG=Os03t0717600-01
Chr03	irgsp1_rep	five_prime_UTR	29045420	29045538	.	-	.	Parent=Os03t0717600-01
Chr03	irgsp1_rep	CDS	29045246	29045419	.	-	0	Parent=Os03t0717600-01
Chr03	irgsp1_rep	CDS	29044656	29044766	.	-	0	Parent=Os03t0717600-01
Chr03	irgsp1_rep	CDS	29044041	29044145	.	-	0	Parent=Os03t0717600-01
Chr03	irgsp1_rep	CDS	29043231	29043373	.	-	0	Parent=Os03t0717600-01
Chr03	irgsp1_rep	CDS	29042799	29042895	.	-	1	Parent=Os03t0717600-01
Chr03	irgsp1_rep	CDS	29042391	29042549	.	-	0	Parent=Os03t0717600-01
Chr03	irgsp1_rep	CDS	29042215	29042286	.	-	0	Parent=Os03t0717600-01
Chr03	irgsp1_rep	CDS	29041960	29042121	.	-	0	Parent=Os03t0717600-01
Chr03	irgsp1_rep	CDS	29040808	29040885	.	-	0	Parent=Os03t0717600-01
Chr03	irgsp1_rep	CDS	29040389	29040517	.	-	0	Parent=Os03t0717600-01
Chr03	irgsp1_rep	CDS	29039935	29040081	.	-	0	Parent=Os03t0717600-01
Chr03	irgsp1_rep	CDS	29039590	29039736	.	-	0	Parent=Os03t0717600-01
Chr03	irgsp1_rep	three_prime_UTR	29039345	29039589	.	-	.	Parent=Os03t0717600-01
Chr03	irgsp1_rep	mRNA	29052532	29058005	.	+	.	ID=Os03t0717700-01;Name=Os03t0717700-01;Locus_id=Os03g0717700;RAP-DB Gene Symbol Synonym(s)=HK4%2C OHK4%2C HK%2C OsHK4%2C Crl1b%2C Ohk4;RAP-DB Gene Name Synonym(s)=HISTIDINE KINASE 4%2C histidine kinase 4%2C His kinase 4;CGSNL Gene Symbol=HK4;CGSNL Gene Name=HISTIDINE KINASE 4;Oryzabase Gene Symbol Synonym(s)=OHK4%2C HK%2C OsHK4%2C Crl1b%2C Ohk4;Oryzabase Gene Name Synonym(s)=histidine kinase 4%2C His kinase 4;Note=Histidine kinase%2C Cytokinin signaling;Transcript_evidence=BR000246 (DDBJ);ORF_evidence=A1A698 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: signal transduction (GO:0007165),Biological Process: phosphorylation (GO:0016310),Biological Process: peptidyl-histidine phosphorylation (GO:0018106),Cellular Component: membrane (GO:0016020),Molecular Function: two-component sensor activity (GO:0000155),Molecular Function: two-component response regulator activity (GO:0000156),Molecular Function: protein histidine kinase activity (GO:0004673),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),ATPase-like%2C ATP-binding domain (IPR003594),Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain (IPR003661),Signal transduction histidine kinase-related protein%2C C-terminal (IPR004358),Signal transduction histidine kinase%2C core (IPR005467),CHASE (IPR006189),Signal transduction histidine kinase%2C homodimeric (IPR009082),CheY-like superfamily (IPR011006);Manual Curation=April 5%2C 2010;Literature_PMID=16919402,17293362;Oryzabase=8144;TENOR=Os03t0717700-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	29052532	29052879	.	+	0	Parent=Os03t0717700-01
Chr03	irgsp1_rep	CDS	29053243	29053476	.	+	0	Parent=Os03t0717700-01
Chr03	irgsp1_rep	CDS	29053572	29053738	.	+	0	Parent=Os03t0717700-01
Chr03	irgsp1_rep	CDS	29054040	29054258	.	+	1	Parent=Os03t0717700-01
Chr03	irgsp1_rep	CDS	29054350	29054536	.	+	1	Parent=Os03t0717700-01
Chr03	irgsp1_rep	CDS	29054619	29054670	.	+	0	Parent=Os03t0717700-01
Chr03	irgsp1_rep	CDS	29054765	29054994	.	+	2	Parent=Os03t0717700-01
Chr03	irgsp1_rep	CDS	29055226	29055324	.	+	0	Parent=Os03t0717700-01
Chr03	irgsp1_rep	CDS	29055466	29056172	.	+	0	Parent=Os03t0717700-01
Chr03	irgsp1_rep	CDS	29056611	29057126	.	+	1	Parent=Os03t0717700-01
Chr03	irgsp1_rep	CDS	29057747	29058005	.	+	1	Parent=Os03t0717700-01
Chr03	irgsp1_rep	mRNA	29056085	29058566	.	+	.	ID=Os03t0717700-02;Name=Os03t0717700-02;Locus_id=Os03g0717700;CGSNL Gene Symbol=HK4;CGSNL Gene Name=HISTIDINE KINASE 4;Oryzabase Gene Symbol Synonym(s)=OHK4%2C HK%2C OsHK4%2C Crl1b%2C Ohk4;Oryzabase Gene Name Synonym(s)=histidine kinase 4%2C His kinase 4;Note=Similar to Histidine kinase.;Transcript_evidence=AK060709 (DDBJ%2C Best hit);ORF_evidence=A1A698 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: two-component response regulator activity (GO:0000156);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),CheY-like superfamily (IPR011006);NIAS_FLcDNA=001-030-H10;Oryzabase=8144;TENOR=Os03t0717700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	29056085	29056086	.	+	.	Parent=Os03t0717700-02
Chr03	irgsp1_rep	CDS	29056087	29056172	.	+	0	Parent=Os03t0717700-02
Chr03	irgsp1_rep	CDS	29056611	29057126	.	+	1	Parent=Os03t0717700-02
Chr03	irgsp1_rep	CDS	29057747	29058005	.	+	1	Parent=Os03t0717700-02
Chr03	irgsp1_rep	three_prime_UTR	29058006	29058566	.	+	.	Parent=Os03t0717700-02
Chr03	irgsp1_rep	mRNA	29064993	29067556	.	+	.	ID=Os03t0717900-01;Name=Os03t0717900-01;Locus_id=Os03g0717900;Note=Similar to ABRH7 (Fragment).;Transcript_evidence=AK099485 (DDBJ%2C Best hit);ORF_evidence=E4MX37 (UniProt);InterPro=Protein of unknown function DUF760 (IPR008479);NIAS_FLcDNA=J013026C05;Expression=AK099485;TENOR=Os03t0717900-01;KEGG=Os03t0717900-01
Chr03	irgsp1_rep	five_prime_UTR	29064993	29065041	.	+	.	Parent=Os03t0717900-01
Chr03	irgsp1_rep	CDS	29065042	29065299	.	+	0	Parent=Os03t0717900-01
Chr03	irgsp1_rep	CDS	29065577	29065869	.	+	0	Parent=Os03t0717900-01
Chr03	irgsp1_rep	CDS	29066448	29067264	.	+	1	Parent=Os03t0717900-01
Chr03	irgsp1_rep	three_prime_UTR	29067265	29067556	.	+	.	Parent=Os03t0717900-01
Chr03	irgsp1_rep	mRNA	29065607	29067576	.	+	.	ID=Os03t0717900-02;Name=Os03t0717900-02;Locus_id=Os03g0717900;Note=Similar to mRNA%2C clone: RTFL01-13-K15.;Transcript_evidence=AK060573 (DDBJ%2C Best hit);ORF_evidence=E4MX37 (UniProt);InterPro=Protein of unknown function DUF760 (IPR008479);NIAS_FLcDNA=001-023-C09;TENOR=Os03t0717900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	29065607	29065699	.	+	.	Parent=Os03t0717900-02
Chr03	irgsp1_rep	CDS	29065700	29065869	.	+	0	Parent=Os03t0717900-02
Chr03	irgsp1_rep	CDS	29066448	29067264	.	+	1	Parent=Os03t0717900-02
Chr03	irgsp1_rep	three_prime_UTR	29067265	29067576	.	+	.	Parent=Os03t0717900-02
Chr03	irgsp1_rep	mRNA	29065077	29067353	.	-	.	ID=Os03t0717950-00;Name=Os03t0717950-00;Locus_id=Os03g0717950;Note=Hypothetical protein.;Transcript_evidence=tplb0028e15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0717950-00
Chr03	irgsp1_rep	five_prime_UTR	29066635	29067353	.	-	.	Parent=Os03t0717950-00
Chr03	irgsp1_rep	CDS	29066446	29066634	.	-	0	Parent=Os03t0717950-00
Chr03	irgsp1_rep	CDS	29065569	29065867	.	-	0	Parent=Os03t0717950-00
Chr03	irgsp1_rep	CDS	29065077	29065296	.	-	1	Parent=Os03t0717950-00
Chr03	irgsp1_rep	mRNA	29067766	29071481	.	-	.	ID=Os03t0718000-01;Name=Os03t0718000-01;Locus_id=Os03g0718000;CGSNL Gene Symbol=ASB2;CGSNL Gene Name=ANTHRANILATE SYNTHASE BETA-SUBUNIT 2;Oryzabase Gene Symbol Synonym(s)=OASB2;Oryzabase Gene Name Synonym(s)=anthranilate synthase beta subunit 2%2C Anthranilate synthase beta 2 subunit;Note=Similar to Anthranilate synthase beta chain.;Transcript_evidence=AK105178 (DDBJ%2C Best hit);ORF_evidence=Q8L9I8 (UniProt);GO=Biological Process: glutamine metabolic process (GO:0006541),Biological Process: metabolic process (GO:0008152),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824);InterPro=Carbamoyl-phosphate synthase%2C GATase domain (IPR001317),Anthranilate synthase component II/delta crystallin (IPR006220),Anthranilate synthase%2C glutamine amidotransferase (IPR006221),Glutamine amidotransferase superfamily (IPR011702),Glutamine amidotransferase type 1 (IPR017926);NIAS_FLcDNA=001-105-C08;Oryzabase=11875;Expression=AK105178;TENOR=Os03t0718000-01;KEGG=Os03t0718000-01 (EC:4.1.3.27)
Chr03	irgsp1_rep	five_prime_UTR	29071425	29071481	.	-	.	Parent=Os03t0718000-01
Chr03	irgsp1_rep	CDS	29071328	29071424	.	-	0	Parent=Os03t0718000-01
Chr03	irgsp1_rep	CDS	29070719	29070879	.	-	2	Parent=Os03t0718000-01
Chr03	irgsp1_rep	CDS	29069684	29069754	.	-	0	Parent=Os03t0718000-01
Chr03	irgsp1_rep	CDS	29069548	29069585	.	-	1	Parent=Os03t0718000-01
Chr03	irgsp1_rep	CDS	29069311	29069421	.	-	2	Parent=Os03t0718000-01
Chr03	irgsp1_rep	CDS	29069118	29069217	.	-	2	Parent=Os03t0718000-01
Chr03	irgsp1_rep	CDS	29068714	29068849	.	-	1	Parent=Os03t0718000-01
Chr03	irgsp1_rep	CDS	29068002	29068109	.	-	0	Parent=Os03t0718000-01
Chr03	irgsp1_rep	three_prime_UTR	29067766	29068001	.	-	.	Parent=Os03t0718000-01
Chr03	irgsp1_rep	mRNA	29074003	29075858	.	+	.	ID=Os03t0718100-01;Name=Os03t0718100-01;Locus_id=Os03g0718100;CGSNL Gene Symbol=ACT1;CGSNL Gene Name=ACTIN 1;Oryzabase Gene Symbol Synonym(s)=act1%2C AC1%2C RAC1%2C RAc1%2C ACT11%2C OsACT1;Oryzabase Gene Name Synonym(s)=Actin1%2C Actin-1%2C Actin1*(act1)%2C actin 1%2C Actin 11;Note=Actin 1.;Transcript_evidence=AK100267 (DDBJ%2C Best hit),AK058421 (DDBJ%2C Best hit);ORF_evidence=Q10DV7 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Actin-like (IPR004000),Actin%2C conserved site (IPR004001),Actin/actin-like conserved site (IPR020902);NIAS_FLcDNA=J023065A19,001-015-D09;Oryzabase=519;TENOR=Os03t0718100-01
Chr03	irgsp1_rep	five_prime_UTR	29074003	29074005	.	+	.	Parent=Os03t0718100-01
Chr03	irgsp1_rep	CDS	29074006	29074065	.	+	0	Parent=Os03t0718100-01
Chr03	irgsp1_rep	CDS	29074149	29074542	.	+	0	Parent=Os03t0718100-01
Chr03	irgsp1_rep	CDS	29074792	29075405	.	+	2	Parent=Os03t0718100-01
Chr03	irgsp1_rep	CDS	29075487	29075552	.	+	0	Parent=Os03t0718100-01
Chr03	irgsp1_rep	three_prime_UTR	29075553	29075858	.	+	.	Parent=Os03t0718100-01
Chr03	irgsp1_rep	mRNA	29074006	29075550	.	-	.	ID=Os03t0718150-00;Name=Os03t0718150-00;Locus_id=Os03g0718150;Note=Hypothetical protein.;Transcript_evidence=BT018641 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0718150-00
Chr03	irgsp1_rep	five_prime_UTR	29075467	29075550	.	-	.	Parent=Os03t0718150-00
Chr03	irgsp1_rep	five_prime_UTR	29074863	29075387	.	-	.	Parent=Os03t0718150-00
Chr03	irgsp1_rep	CDS	29074789	29074862	.	-	0	Parent=Os03t0718150-00
Chr03	irgsp1_rep	CDS	29074131	29074539	.	-	1	Parent=Os03t0718150-00
Chr03	irgsp1_rep	CDS	29074006	29074051	.	-	0	Parent=Os03t0718150-00
Chr03	irgsp1_rep	mRNA	29076980	29077842	.	-	.	ID=Os03t0718200-01;Name=Os03t0718200-01;Locus_id=Os03g0718200;Note=Zinc finger%2C SWIM-type domain containing protein.;Transcript_evidence=AK063808 (DDBJ%2C Best hit);ORF_evidence=Q10DV6 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527);NIAS_FLcDNA=001-121-G05;Expression=AK063808;TENOR=Os03t0718200-01;KEGG=Os03t0718200-01
Chr03	irgsp1_rep	five_prime_UTR	29077841	29077842	.	-	.	Parent=Os03t0718200-01
Chr03	irgsp1_rep	CDS	29077025	29077840	.	-	0	Parent=Os03t0718200-01
Chr03	irgsp1_rep	three_prime_UTR	29076980	29077024	.	-	.	Parent=Os03t0718200-01
Chr03	irgsp1_rep	mRNA	29081380	29081994	.	-	.	ID=Os03t0718300-01;Name=Os03t0718300-01;Locus_id=Os03g0718300;Note=Hypothetical protein.;Transcript_evidence=AK108509 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-144-A02;TENOR=Os03t0718300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	29081707	29081994	.	-	0	Parent=Os03t0718300-01
Chr03	irgsp1_rep	three_prime_UTR	29081380	29081706	.	-	.	Parent=Os03t0718300-01
Chr03	irgsp1_rep	mRNA	29090580	29091512	.	+	.	ID=Os03t0718500-00;Name=Os03t0718500-00;Locus_id=Os03g0718500;Oryzabase Gene Symbol Synonym(s)=OsZHD11;Oryzabase Gene Name Synonym(s)=zinc finger homeodomain class homeobox transcription factor 11;Note=Homeodomain-related domain containing protein.;Transcript_evidence=EU971875 (DDBJ);ORF_evidence=NP_001151696.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Homeobox domain%2C ZF-HD class (IPR006455),ZF-HD homeobox protein%2C Cys/His-rich dimerisation domain (IPR006456),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);Oryzabase=15624;TENOR=Os03t0718500-00;KEGG=Os03t0718500-00
Chr03	irgsp1_rep	five_prime_UTR	29090580	29090610	.	+	.	Parent=Os03t0718500-00
Chr03	irgsp1_rep	CDS	29090611	29091327	.	+	0	Parent=Os03t0718500-00
Chr03	irgsp1_rep	three_prime_UTR	29091328	29091512	.	+	.	Parent=Os03t0718500-00
Chr03	irgsp1_rep	mRNA	29100788	29103513	.	-	.	ID=Os03t0718600-00;Name=Os03t0718600-00;Locus_id=Os03g0718600;Oryzabase Gene Symbol Synonym(s)=OsCOX11%2C COX11;Oryzabase Gene Name Synonym(s)=cytoChrome oxidase 11;Note=CytoChrome c oxidase assembly protein CtaG/Cox11 family protein.;Transcript_evidence=EF431929 (DDBJ%2C Best hit);ORF_evidence=C6YXJ9 (UniProt);GO=Molecular Function: copper ion binding (GO:0005507);InterPro=CytoChrome c oxidase assembly protein CtaG/Cox11 (IPR007533),CytoChrome c oxidase assembly protein CtaG/Cox11%2C domain (IPR023471);Oryzabase=12340;TENOR=Os03t0718600-00;KEGG=Os03t0718600-00
Chr03	irgsp1_rep	CDS	29103193	29103513	.	-	0	Parent=Os03t0718600-00
Chr03	irgsp1_rep	CDS	29102441	29102493	.	-	0	Parent=Os03t0718600-00
Chr03	irgsp1_rep	CDS	29101804	29101876	.	-	1	Parent=Os03t0718600-00
Chr03	irgsp1_rep	CDS	29101625	29101729	.	-	0	Parent=Os03t0718600-00
Chr03	irgsp1_rep	CDS	29101032	29101112	.	-	0	Parent=Os03t0718600-00
Chr03	irgsp1_rep	CDS	29100833	29100934	.	-	0	Parent=Os03t0718600-00
Chr03	irgsp1_rep	three_prime_UTR	29100788	29100832	.	-	.	Parent=Os03t0718600-00
Chr03	irgsp1_rep	mRNA	29103254	29103528	.	+	.	ID=Os03t0718650-00;Name=Os03t0718650-00;Locus_id=Os03g0718650;Note=Hypothetical protein.;Transcript_evidence=EU955192 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0718650-00
Chr03	irgsp1_rep	five_prime_UTR	29103254	29103254	.	+	.	Parent=Os03t0718650-00
Chr03	irgsp1_rep	CDS	29103255	29103528	.	+	0	Parent=Os03t0718650-00
Chr03	irgsp1_rep	mRNA	29110322	29111067	.	+	.	ID=Os03t0718800-01;Name=Os03t0718800-01;Locus_id=Os03g0718800;Note=Similar to Physical impedance induced protein.;Transcript_evidence=AK288124 (DDBJ%2C Best hit);ORF_evidence=NP_001149478.1 (RefSeq);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=J080072O22;TENOR=Os03t0718800-01;KEGG=Os03t0718800-01
Chr03	irgsp1_rep	five_prime_UTR	29110322	29110421	.	+	.	Parent=Os03t0718800-01
Chr03	irgsp1_rep	CDS	29110422	29110793	.	+	0	Parent=Os03t0718800-01
Chr03	irgsp1_rep	three_prime_UTR	29110794	29111067	.	+	.	Parent=Os03t0718800-01
Chr03	irgsp1_rep	mRNA	29114654	29117733	.	-	.	ID=Os03t0719000-01;Name=Os03t0719000-01;Locus_id=Os03g0719000;Note=MAP65/ASE1 family protein.;Transcript_evidence=AK108923 (DDBJ%2C Best hit);ORF_evidence=XP_002875099.1 (RefSeq);InterPro=Microtubule-associated protein%2C MAP65/ASE1-type (IPR007145);NIAS_FLcDNA=002-152-H10;Expression=AK108923;TENOR=Os03t0719000-01;KEGG=Os03t0719000-01
Chr03	irgsp1_rep	CDS	29117596	29117733	.	-	0	Parent=Os03t0719000-01
Chr03	irgsp1_rep	CDS	29116772	29116990	.	-	0	Parent=Os03t0719000-01
Chr03	irgsp1_rep	CDS	29116509	29116664	.	-	0	Parent=Os03t0719000-01
Chr03	irgsp1_rep	CDS	29116256	29116415	.	-	0	Parent=Os03t0719000-01
Chr03	irgsp1_rep	CDS	29115991	29116142	.	-	2	Parent=Os03t0719000-01
Chr03	irgsp1_rep	CDS	29115810	29115897	.	-	0	Parent=Os03t0719000-01
Chr03	irgsp1_rep	CDS	29115630	29115703	.	-	2	Parent=Os03t0719000-01
Chr03	irgsp1_rep	CDS	29115451	29115525	.	-	0	Parent=Os03t0719000-01
Chr03	irgsp1_rep	CDS	29114906	29115262	.	-	0	Parent=Os03t0719000-01
Chr03	irgsp1_rep	three_prime_UTR	29114654	29114905	.	-	.	Parent=Os03t0719000-01
Chr03	irgsp1_rep	mRNA	29126803	29134828	.	+	.	ID=Os03t0719100-01;Name=Os03t0719100-01;Locus_id=Os03g0719100;RAP-DB Gene Symbol Synonym(s)=SIZ2%2C OsSIZ2;RAP-DB Gene Name Synonym(s)=SAP and MIZ 2%2C SIZ/PIAS-type SUMO E3 ligase 2;CGSNL Gene Symbol=SIZ2;Oryzabase Gene Symbol Synonym(s)=OsSIZ2;Oryzabase Gene Name Synonym(s)=SAP and MIZ 2%2C SIZ/PIAS-type SUMO E3 ligase 2;Note=SUMO (small ubiquitin-related modifier) E3-ligase%2C Abiotic stress response%2C Stress adaptation;Transcript_evidence=AK065127;ORF_evidence=Q6ASW7;GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=SAP domain (IPR003034),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C MIZ-type (IPR004181),Zinc finger%2C PHD-type%2C conserved site (IPR019786);NIAS_FLcDNA=J013001P07;Manual Curation=February 26%2C 2016;Literature_PMID=20561251;Oryzabase=9366;Expression=AK065127;TENOR=Os03t0719100-01;KEGG=Os03t0719100-01
Chr03	irgsp1_rep	five_prime_UTR	29126803	29127096	.	+	.	Parent=Os03t0719100-01
Chr03	irgsp1_rep	CDS	29127097	29127141	.	+	0	Parent=Os03t0719100-01
Chr03	irgsp1_rep	CDS	29128188	29128268	.	+	0	Parent=Os03t0719100-01
Chr03	irgsp1_rep	CDS	29128670	29128718	.	+	0	Parent=Os03t0719100-01
Chr03	irgsp1_rep	CDS	29128805	29128883	.	+	2	Parent=Os03t0719100-01
Chr03	irgsp1_rep	CDS	29128968	29129127	.	+	1	Parent=Os03t0719100-01
Chr03	irgsp1_rep	CDS	29129513	29129646	.	+	0	Parent=Os03t0719100-01
Chr03	irgsp1_rep	CDS	29130020	29130088	.	+	1	Parent=Os03t0719100-01
Chr03	irgsp1_rep	CDS	29130270	29130357	.	+	1	Parent=Os03t0719100-01
Chr03	irgsp1_rep	CDS	29130602	29130677	.	+	0	Parent=Os03t0719100-01
Chr03	irgsp1_rep	CDS	29131473	29131546	.	+	2	Parent=Os03t0719100-01
Chr03	irgsp1_rep	CDS	29131684	29131791	.	+	0	Parent=Os03t0719100-01
Chr03	irgsp1_rep	CDS	29132205	29132366	.	+	0	Parent=Os03t0719100-01
Chr03	irgsp1_rep	CDS	29132689	29132793	.	+	0	Parent=Os03t0719100-01
Chr03	irgsp1_rep	CDS	29132876	29132956	.	+	0	Parent=Os03t0719100-01
Chr03	irgsp1_rep	CDS	29133044	29134058	.	+	0	Parent=Os03t0719100-01
Chr03	irgsp1_rep	CDS	29134292	29134407	.	+	2	Parent=Os03t0719100-01
Chr03	irgsp1_rep	three_prime_UTR	29134408	29134828	.	+	.	Parent=Os03t0719100-01
Chr03	irgsp1_rep	mRNA	29128183	29134431	.	-	.	ID=Os03t0719150-00;Name=Os03t0719150-00;Locus_id=Os03g0719150;Note=Non-protein coding transcript.;Transcript_evidence=tplb0051k01 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os03t0719150-00
Chr03	irgsp1_rep	exon	29134337	29134431	.	-	.	Parent=Os03t0719150-00
Chr03	irgsp1_rep	exon	29133947	29134105	.	-	.	Parent=Os03t0719150-00
Chr03	irgsp1_rep	exon	29133036	29133859	.	-	.	Parent=Os03t0719150-00
Chr03	irgsp1_rep	exon	29132855	29132950	.	-	.	Parent=Os03t0719150-00
Chr03	irgsp1_rep	exon	29132687	29132772	.	-	.	Parent=Os03t0719150-00
Chr03	irgsp1_rep	exon	29132203	29132364	.	-	.	Parent=Os03t0719150-00
Chr03	irgsp1_rep	exon	29131689	29131795	.	-	.	Parent=Os03t0719150-00
Chr03	irgsp1_rep	exon	29131496	29131554	.	-	.	Parent=Os03t0719150-00
Chr03	irgsp1_rep	exon	29130595	29130694	.	-	.	Parent=Os03t0719150-00
Chr03	irgsp1_rep	exon	29130284	29130350	.	-	.	Parent=Os03t0719150-00
Chr03	irgsp1_rep	exon	29130014	29130097	.	-	.	Parent=Os03t0719150-00
Chr03	irgsp1_rep	exon	29129511	29129639	.	-	.	Parent=Os03t0719150-00
Chr03	irgsp1_rep	exon	29128959	29129125	.	-	.	Parent=Os03t0719150-00
Chr03	irgsp1_rep	exon	29128773	29128876	.	-	.	Parent=Os03t0719150-00
Chr03	irgsp1_rep	exon	29128183	29128277	.	-	.	Parent=Os03t0719150-00
Chr03	irgsp1_rep	mRNA	29137670	29145550	.	-	.	ID=Os03t0719300-01;Name=Os03t0719300-01;Locus_id=Os03g0719300;Note=Similar to Dihydroxyacetone/glycerone kinase-like protein.;Transcript_evidence=AK119254 (DDBJ%2C Best hit);ORF_evidence=NP_001148575.1 (RefSeq);GO=Biological Process: glycerol metabolic process (GO:0006071),Molecular Function: glycerone kinase activity (GO:0004371),Molecular Function: ATP binding (GO:0005524);InterPro=Dak kinase (IPR004006),Dak phosphatase (IPR004007),Dihydroxyacetone kinase (IPR012734);NIAS_FLcDNA=001-123-G11;Expression=AK119254;TENOR=Os03t0719300-01;KEGG=Os03t0719300-01 (EC:2.7.1.29)
Chr03	irgsp1_rep	five_prime_UTR	29145408	29145550	.	-	.	Parent=Os03t0719300-01
Chr03	irgsp1_rep	CDS	29145368	29145407	.	-	0	Parent=Os03t0719300-01
Chr03	irgsp1_rep	CDS	29145149	29145222	.	-	2	Parent=Os03t0719300-01
Chr03	irgsp1_rep	CDS	29144992	29145055	.	-	0	Parent=Os03t0719300-01
Chr03	irgsp1_rep	CDS	29143664	29143776	.	-	2	Parent=Os03t0719300-01
Chr03	irgsp1_rep	CDS	29143524	29143571	.	-	0	Parent=Os03t0719300-01
Chr03	irgsp1_rep	CDS	29142499	29142570	.	-	0	Parent=Os03t0719300-01
Chr03	irgsp1_rep	CDS	29142312	29142401	.	-	0	Parent=Os03t0719300-01
Chr03	irgsp1_rep	CDS	29141363	29141536	.	-	0	Parent=Os03t0719300-01
Chr03	irgsp1_rep	CDS	29141110	29141193	.	-	0	Parent=Os03t0719300-01
Chr03	irgsp1_rep	CDS	29140673	29140728	.	-	0	Parent=Os03t0719300-01
Chr03	irgsp1_rep	CDS	29140338	29140468	.	-	1	Parent=Os03t0719300-01
Chr03	irgsp1_rep	CDS	29139928	29140020	.	-	2	Parent=Os03t0719300-01
Chr03	irgsp1_rep	CDS	29139724	29139788	.	-	2	Parent=Os03t0719300-01
Chr03	irgsp1_rep	CDS	29139267	29139410	.	-	0	Parent=Os03t0719300-01
Chr03	irgsp1_rep	CDS	29139143	29139186	.	-	0	Parent=Os03t0719300-01
Chr03	irgsp1_rep	CDS	29138723	29138806	.	-	1	Parent=Os03t0719300-01
Chr03	irgsp1_rep	CDS	29138569	29138636	.	-	1	Parent=Os03t0719300-01
Chr03	irgsp1_rep	CDS	29138378	29138490	.	-	2	Parent=Os03t0719300-01
Chr03	irgsp1_rep	CDS	29138206	29138301	.	-	0	Parent=Os03t0719300-01
Chr03	irgsp1_rep	CDS	29137934	29138065	.	-	0	Parent=Os03t0719300-01
Chr03	irgsp1_rep	three_prime_UTR	29137670	29137933	.	-	.	Parent=Os03t0719300-01
Chr03	irgsp1_rep	mRNA	29137675	29142594	.	-	.	ID=Os03t0719300-02;Name=Os03t0719300-02;Locus_id=Os03g0719300;Note=Similar to Dihydroxyacetone kinase-like protein.;Transcript_evidence=AK067993 (DDBJ%2C Best hit);ORF_evidence=Q0ILF8 (UniProt);GO=Biological Process: glycerol metabolic process (GO:0006071),Molecular Function: glycerone kinase activity (GO:0004371);InterPro=Dak kinase (IPR004006);NIAS_FLcDNA=J013124A06;Expression=AK067993;TENOR=Os03t0719300-02;KEGG=Os03t0719300-02 (EC:2.7.1.29)
Chr03	irgsp1_rep	CDS	29142499	29142594	.	-	0	Parent=Os03t0719300-02
Chr03	irgsp1_rep	CDS	29142312	29142401	.	-	0	Parent=Os03t0719300-02
Chr03	irgsp1_rep	CDS	29141327	29141536	.	-	0	Parent=Os03t0719300-02
Chr03	irgsp1_rep	three_prime_UTR	29141110	29141326	.	-	.	Parent=Os03t0719300-02
Chr03	irgsp1_rep	three_prime_UTR	29140338	29140728	.	-	.	Parent=Os03t0719300-02
Chr03	irgsp1_rep	three_prime_UTR	29139928	29140020	.	-	.	Parent=Os03t0719300-02
Chr03	irgsp1_rep	three_prime_UTR	29139724	29139788	.	-	.	Parent=Os03t0719300-02
Chr03	irgsp1_rep	three_prime_UTR	29139143	29139410	.	-	.	Parent=Os03t0719300-02
Chr03	irgsp1_rep	three_prime_UTR	29138723	29138806	.	-	.	Parent=Os03t0719300-02
Chr03	irgsp1_rep	three_prime_UTR	29138569	29138636	.	-	.	Parent=Os03t0719300-02
Chr03	irgsp1_rep	three_prime_UTR	29138378	29138490	.	-	.	Parent=Os03t0719300-02
Chr03	irgsp1_rep	three_prime_UTR	29138206	29138301	.	-	.	Parent=Os03t0719300-02
Chr03	irgsp1_rep	three_prime_UTR	29137675	29138065	.	-	.	Parent=Os03t0719300-02
Chr03	irgsp1_rep	mRNA	29150126	29153530	.	-	.	ID=Os03t0719400-01;Name=Os03t0719400-01;Locus_id=Os03g0719400;Note=Alpha/beta hydrolase fold-1 domain containing protein.;Transcript_evidence=AK120822 (DDBJ%2C Best hit);ORF_evidence=Q8LLN8 (UniProt);InterPro=Alpha/beta hydrolase%2C N-terminal (IPR022742);NIAS_FLcDNA=J023019A20;Expression=AK120822;TENOR=Os03t0719400-01;KEGG=Os03t0719400-01
Chr03	irgsp1_rep	five_prime_UTR	29153457	29153530	.	-	.	Parent=Os03t0719400-01
Chr03	irgsp1_rep	CDS	29153038	29153456	.	-	0	Parent=Os03t0719400-01
Chr03	irgsp1_rep	CDS	29152816	29152854	.	-	1	Parent=Os03t0719400-01
Chr03	irgsp1_rep	CDS	29152648	29152718	.	-	1	Parent=Os03t0719400-01
Chr03	irgsp1_rep	CDS	29151619	29151683	.	-	2	Parent=Os03t0719400-01
Chr03	irgsp1_rep	CDS	29151446	29151535	.	-	0	Parent=Os03t0719400-01
Chr03	irgsp1_rep	CDS	29151234	29151326	.	-	0	Parent=Os03t0719400-01
Chr03	irgsp1_rep	CDS	29150574	29150975	.	-	0	Parent=Os03t0719400-01
Chr03	irgsp1_rep	three_prime_UTR	29150126	29150573	.	-	.	Parent=Os03t0719400-01
Chr03	irgsp1_rep	mRNA	29150436	29151001	.	+	.	ID=Os03t0719450-00;Name=Os03t0719450-00;Locus_id=Os03g0719450;Note=Hypothetical gene.;Transcript_evidence=EU946282 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0719450-00;KEGG=Os03t0719450-00
Chr03	irgsp1_rep	five_prime_UTR	29150436	29150471	.	+	.	Parent=Os03t0719450-00
Chr03	irgsp1_rep	CDS	29150472	29150690	.	+	0	Parent=Os03t0719450-00
Chr03	irgsp1_rep	three_prime_UTR	29150691	29151001	.	+	.	Parent=Os03t0719450-00
Chr03	irgsp1_rep	mRNA	29161471	29165178	.	-	.	ID=Os03t0719500-01;Name=Os03t0719500-01;Locus_id=Os03g0719500;Note=Hypothetical conserved gene.;Transcript_evidence=AK106321 (DDBJ%2C Best hit);ORF_evidence=Q6ASW0 (UniProt);NIAS_FLcDNA=002-101-E08;TENOR=Os03t0719500-01
Chr03	irgsp1_rep	five_prime_UTR	29164549	29165178	.	-	.	Parent=Os03t0719500-01
Chr03	irgsp1_rep	CDS	29163507	29164548	.	-	0	Parent=Os03t0719500-01
Chr03	irgsp1_rep	CDS	29161471	29162235	.	-	2	Parent=Os03t0719500-01
Chr03	irgsp1_rep	mRNA	29157957	29161948	.	-	.	ID=Os03t0719500-02;Name=Os03t0719500-02;Locus_id=Os03g0719500;Note=Similar to protein kinase family protein.;Transcript_evidence=AK120135 (DDBJ%2C Best hit);ORF_evidence=NP_177488.2 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013027F03;TENOR=Os03t0719500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	29160930	29161948	.	-	0	Parent=Os03t0719500-02
Chr03	irgsp1_rep	CDS	29160494	29160773	.	-	1	Parent=Os03t0719500-02
Chr03	irgsp1_rep	CDS	29159686	29159793	.	-	0	Parent=Os03t0719500-02
Chr03	irgsp1_rep	CDS	29159284	29159562	.	-	0	Parent=Os03t0719500-02
Chr03	irgsp1_rep	CDS	29158756	29158899	.	-	0	Parent=Os03t0719500-02
Chr03	irgsp1_rep	CDS	29158442	29158630	.	-	0	Parent=Os03t0719500-02
Chr03	irgsp1_rep	three_prime_UTR	29157957	29158441	.	-	.	Parent=Os03t0719500-02
Chr03	irgsp1_rep	mRNA	29167195	29173721	.	+	.	ID=Os03t0719700-01;Name=Os03t0719700-01;Locus_id=Os03g0719700;Note=Similar to PhytoChrome A.;Transcript_evidence=AK065707 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013035O04;Expression=AK065707;TENOR=Os03t0719700-01;KEGG=Os03t0719700-01
Chr03	irgsp1_rep	five_prime_UTR	29167195	29167344	.	+	.	Parent=Os03t0719700-01
Chr03	irgsp1_rep	five_prime_UTR	29167447	29167670	.	+	.	Parent=Os03t0719700-01
Chr03	irgsp1_rep	five_prime_UTR	29170448	29170640	.	+	.	Parent=Os03t0719700-01
Chr03	irgsp1_rep	CDS	29170641	29170952	.	+	0	Parent=Os03t0719700-01
Chr03	irgsp1_rep	three_prime_UTR	29170953	29173721	.	+	.	Parent=Os03t0719700-01
Chr03	irgsp1_rep	mRNA	29168197	29176006	.	-	.	ID=Os03t0719800-01;Name=Os03t0719800-01;Locus_id=Os03g0719800;RAP-DB Gene Symbol Synonym(s)=PHYA%2C phyA%2C PHYA* (phyA)%2C PHYA*%2C Phya%2C PHY18%2C phy 18%2C OsPHYA;RAP-DB Gene Name Synonym(s)=PHYTOCHROME A%2C PhytoChromeA%2C PhytoChrome A%2C PhytoChrome-A;CGSNL Gene Symbol=PHYA;CGSNL Gene Name=PHYTOCHROME A;Oryzabase Gene Symbol Synonym(s)=phyA%2C PHYA* (phyA)%2C PHYA*%2C Phya%2C PHY18%2C phy 18%2C OsPHYA;Oryzabase Gene Name Synonym(s)=PhytoChromeA%2C PhytoChrome A%2C PhytoChrome-A;Note=PhytoChrome A%2C Photoreceptor;Transcript_evidence=AB109891 (Genbank),AK072482 (Genbank);ORF_evidence=Q10DU0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: signal transduction (GO:0007165),Biological Process: detection of visible light (GO:0009584),Biological Process: red%2C far-red light phototransduction (GO:0009585),Biological Process: protein-tetrapyrrole linkage (GO:0017006),Biological Process: peptidyl-histidine phosphorylation (GO:0018106),Biological Process: protein-Chromophore linkage (GO:0018298),Cellular Component: membrane (GO:0016020),Molecular Function: two-component sensor activity (GO:0000155),Molecular Function: protein histidine kinase activity (GO:0004673),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: G-protein coupled photoreceptor activity (GO:0008020),Molecular Function: photoreceptor activity (GO:0009881),Molecular Function: protein homodimerization activity (GO:0042803);InterPro=PAS (IPR000014),PhytoChrome (IPR001294),GAF domain (IPR003018),ATPase-like%2C ATP-binding domain (IPR003594),Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain (IPR003661),Signal transduction histidine kinase%2C core (IPR005467),PhytoChrome A/B/C/D/E (IPR012129),PhytoChrome%2C central region (IPR013515),PhytoChrome Chromophore binding site (IPR013516),PAS fold-2 (IPR013654),PAS fold (IPR013767),PhytoChrome Chromophore attachment domain (IPR016132);Manual Curation=May 14%2C 2009;Literature_PMID=11251094,16278346;Oryzabase=531;TENOR=Os03t0719800-01
Chr03	irgsp1_rep	five_prime_UTR	29175872	29176006	.	-	.	Parent=Os03t0719800-01
Chr03	irgsp1_rep	five_prime_UTR	29173231	29173284	.	-	.	Parent=Os03t0719800-01
Chr03	irgsp1_rep	CDS	29171166	29173230	.	-	0	Parent=Os03t0719800-01
Chr03	irgsp1_rep	CDS	29170132	29170948	.	-	2	Parent=Os03t0719800-01
Chr03	irgsp1_rep	CDS	29169554	29169850	.	-	1	Parent=Os03t0719800-01
Chr03	irgsp1_rep	CDS	29169244	29169451	.	-	1	Parent=Os03t0719800-01
Chr03	irgsp1_rep	three_prime_UTR	29169234	29169243	.	-	.	Parent=Os03t0719800-01
Chr03	irgsp1_rep	three_prime_UTR	29168197	29168510	.	-	.	Parent=Os03t0719800-01
Chr03	irgsp1_rep	mRNA	29180902	29183157	.	-	.	ID=Os03t0719850-00;Name=Os03t0719850-00;Locus_id=Os03g0719850;CGSNL Gene Symbol=RLCK115;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 115;Oryzabase Gene Symbol Synonym(s)=OsRLCK115;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 115;Note=Similar to Protein kinase 2.;Transcript_evidence=BT038499 (DDBJ);ORF_evidence=Q709M0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18821;TENOR=Os03t0719850-00;KEGG=Os03t0719850-00
Chr03	irgsp1_rep	CDS	29183046	29183157	.	-	0	Parent=Os03t0719850-00
Chr03	irgsp1_rep	CDS	29182729	29182979	.	-	2	Parent=Os03t0719850-00
Chr03	irgsp1_rep	CDS	29182448	29182574	.	-	0	Parent=Os03t0719850-00
Chr03	irgsp1_rep	CDS	29181798	29182071	.	-	2	Parent=Os03t0719850-00
Chr03	irgsp1_rep	CDS	29181330	29181462	.	-	1	Parent=Os03t0719850-00
Chr03	irgsp1_rep	CDS	29181148	29181234	.	-	0	Parent=Os03t0719850-00
Chr03	irgsp1_rep	CDS	29180902	29181015	.	-	0	Parent=Os03t0719850-00
Chr03	irgsp1_rep	mRNA	29185089	29190361	.	-	.	ID=Os03t0719900-01;Name=Os03t0719900-01;Locus_id=Os03g0719900;CGSNL Gene Symbol=PTR8;CGSNL Gene Name=PROTEIN TRANSPORTER 8;Oryzabase Gene Symbol Synonym(s)=OsPTR8%2C OsNPF8.5%2C NPF8.5;Oryzabase Gene Name Synonym(s)=NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 8.5;Note=Similar to Peptide transporter 1.;Transcript_evidence=AK072691 (DDBJ%2C Best hit);ORF_evidence=A6YJX4 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),PTR2 family proton/oligopeptide symporter%2C conserved site (IPR018456);NIAS_FLcDNA=J023139H09;Oryzabase=8916;Expression=AK072691;TENOR=Os03t0719900-01;KEGG=Os03t0719900-01
Chr03	irgsp1_rep	five_prime_UTR	29190082	29190361	.	-	.	Parent=Os03t0719900-01
Chr03	irgsp1_rep	five_prime_UTR	29188636	29188889	.	-	.	Parent=Os03t0719900-01
Chr03	irgsp1_rep	CDS	29188558	29188635	.	-	0	Parent=Os03t0719900-01
Chr03	irgsp1_rep	CDS	29187714	29187819	.	-	0	Parent=Os03t0719900-01
Chr03	irgsp1_rep	CDS	29187403	29187620	.	-	2	Parent=Os03t0719900-01
Chr03	irgsp1_rep	CDS	29186451	29187007	.	-	0	Parent=Os03t0719900-01
Chr03	irgsp1_rep	CDS	29185297	29186119	.	-	1	Parent=Os03t0719900-01
Chr03	irgsp1_rep	three_prime_UTR	29185089	29185296	.	-	.	Parent=Os03t0719900-01
Chr03	irgsp1_rep	mRNA	29185055	29188836	.	-	.	ID=Os03t0719900-02;Name=Os03t0719900-02;Locus_id=Os03g0719900;CGSNL Gene Symbol=PTR8;CGSNL Gene Name=PROTEIN TRANSPORTER 8;Oryzabase Gene Symbol Synonym(s)=OsPTR8%2C OsNPF8.5%2C NPF8.5;Oryzabase Gene Name Synonym(s)=NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 8.5;Note=Similar to Peptide transporter 1.;Transcript_evidence=AK070804 (DDBJ%2C Best hit);ORF_evidence=A6YJX4 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),PTR2 family proton/oligopeptide symporter%2C conserved site (IPR018456);NIAS_FLcDNA=J023069K06;Oryzabase=8916;TENOR=Os03t0719900-02
Chr03	irgsp1_rep	five_prime_UTR	29188636	29188836	.	-	.	Parent=Os03t0719900-02
Chr03	irgsp1_rep	CDS	29188558	29188635	.	-	0	Parent=Os03t0719900-02
Chr03	irgsp1_rep	CDS	29187714	29187819	.	-	0	Parent=Os03t0719900-02
Chr03	irgsp1_rep	CDS	29187403	29187620	.	-	2	Parent=Os03t0719900-02
Chr03	irgsp1_rep	CDS	29186451	29187007	.	-	0	Parent=Os03t0719900-02
Chr03	irgsp1_rep	CDS	29185297	29186119	.	-	1	Parent=Os03t0719900-02
Chr03	irgsp1_rep	three_prime_UTR	29185055	29185296	.	-	.	Parent=Os03t0719900-02
Chr03	irgsp1_rep	mRNA	29185080	29188691	.	-	.	ID=Os03t0719900-03;Name=Os03t0719900-03;Locus_id=Os03g0719900;CGSNL Gene Symbol=PTR8;CGSNL Gene Name=PROTEIN TRANSPORTER 8;Oryzabase Gene Symbol Synonym(s)=OsPTR8%2C OsNPF8.5%2C NPF8.5;Oryzabase Gene Name Synonym(s)=NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 8.5;Note=Similar to Peptide transporter.;Transcript_evidence=AK059693 (DDBJ%2C Best hit);ORF_evidence=A6YJX4 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),PTR2 family proton/oligopeptide symporter%2C conserved site (IPR018456);NIAS_FLcDNA=001-032-B09;Oryzabase=8916;Expression=AK059693;TENOR=Os03t0719900-03;KEGG=Os03t0719900-03
Chr03	irgsp1_rep	five_prime_UTR	29188636	29188691	.	-	.	Parent=Os03t0719900-03
Chr03	irgsp1_rep	CDS	29188558	29188635	.	-	0	Parent=Os03t0719900-03
Chr03	irgsp1_rep	CDS	29187714	29187819	.	-	0	Parent=Os03t0719900-03
Chr03	irgsp1_rep	CDS	29187403	29187620	.	-	2	Parent=Os03t0719900-03
Chr03	irgsp1_rep	CDS	29186451	29187007	.	-	0	Parent=Os03t0719900-03
Chr03	irgsp1_rep	CDS	29186101	29186119	.	-	1	Parent=Os03t0719900-03
Chr03	irgsp1_rep	CDS	29185297	29185965	.	-	0	Parent=Os03t0719900-03
Chr03	irgsp1_rep	three_prime_UTR	29185080	29185296	.	-	.	Parent=Os03t0719900-03
Chr03	irgsp1_rep	mRNA	29185058	29188812	.	-	.	ID=Os03t0719900-04;Name=Os03t0719900-04;Locus_id=Os03g0719900;CGSNL Gene Symbol=PTR8;CGSNL Gene Name=PROTEIN TRANSPORTER 8;Oryzabase Gene Symbol Synonym(s)=OsPTR8%2C OsNPF8.5%2C NPF8.5;Oryzabase Gene Name Synonym(s)=NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 8.5;Note=Similar to Peptide transporter 1.;Transcript_evidence=AK099012 (DDBJ%2C Best hit);ORF_evidence=A6YJX4 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),PTR2 family proton/oligopeptide symporter%2C conserved site (IPR018456);NIAS_FLcDNA=J013116K11;Oryzabase=8916;TENOR=Os03t0719900-04
Chr03	irgsp1_rep	five_prime_UTR	29188636	29188812	.	-	.	Parent=Os03t0719900-04
Chr03	irgsp1_rep	CDS	29188558	29188635	.	-	0	Parent=Os03t0719900-04
Chr03	irgsp1_rep	CDS	29187714	29187819	.	-	0	Parent=Os03t0719900-04
Chr03	irgsp1_rep	CDS	29187403	29187620	.	-	2	Parent=Os03t0719900-04
Chr03	irgsp1_rep	CDS	29186451	29187007	.	-	0	Parent=Os03t0719900-04
Chr03	irgsp1_rep	CDS	29185297	29186119	.	-	1	Parent=Os03t0719900-04
Chr03	irgsp1_rep	three_prime_UTR	29185058	29185296	.	-	.	Parent=Os03t0719900-04
Chr03	irgsp1_rep	mRNA	29185295	29187618	.	+	.	ID=Os03t0720033-00;Name=Os03t0720033-00;Locus_id=Os03g0720033;Note=Non-protein coding transcript.;Transcript_evidence=tplb0038k08 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os03t0720033-00
Chr03	irgsp1_rep	exon	29185295	29186058	.	+	.	Parent=Os03t0720033-00
Chr03	irgsp1_rep	exon	29186382	29186994	.	+	.	Parent=Os03t0720033-00
Chr03	irgsp1_rep	exon	29187390	29187618	.	+	.	Parent=Os03t0720033-00
Chr03	irgsp1_rep	mRNA	29200210	29208630	.	+	.	ID=Os03t0720300-01;Name=Os03t0720300-01;Locus_id=Os03g0720300;Oryzabase Gene Symbol Synonym(s)=GDCi%2C OsGDCi;Oryzabase Gene Name Synonym(s)=GLU DECARBOXYLASE ISOZYME1%2C GLU DECARBOXYLASE ISOZYME 1%2C glutamate decarboxylase 1;Note=Similar to Glutamate decarboxylase isozyme 1 (EC 4.1.1.15).;Transcript_evidence=AK101171 (DDBJ%2C Best hit);ORF_evidence=B4F972 (UniProt);GO=Biological Process: glutamate metabolic process (GO:0006536),Biological Process: carboxylic acid metabolic process (GO:0019752),Molecular Function: catalytic activity (GO:0003824),Molecular Function: glutamate decarboxylase activity (GO:0004351),Molecular Function: carboxy-lyase activity (GO:0016831),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent decarboxylase (IPR002129),Glutamate decarboxylase (IPR010107),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J033028M11;Oryzabase=22343;Expression=AK101171;TENOR=Os03t0720300-01;KEGG=Os03t0720300-01 (EC:4.1.1.15)
Chr03	irgsp1_rep	five_prime_UTR	29200210	29200509	.	+	.	Parent=Os03t0720300-01
Chr03	irgsp1_rep	CDS	29200510	29200592	.	+	0	Parent=Os03t0720300-01
Chr03	irgsp1_rep	CDS	29200688	29200895	.	+	1	Parent=Os03t0720300-01
Chr03	irgsp1_rep	CDS	29206436	29206636	.	+	0	Parent=Os03t0720300-01
Chr03	irgsp1_rep	CDS	29206710	29206924	.	+	0	Parent=Os03t0720300-01
Chr03	irgsp1_rep	CDS	29207074	29207327	.	+	1	Parent=Os03t0720300-01
Chr03	irgsp1_rep	CDS	29207459	29207511	.	+	2	Parent=Os03t0720300-01
Chr03	irgsp1_rep	CDS	29207881	29208345	.	+	0	Parent=Os03t0720300-01
Chr03	irgsp1_rep	three_prime_UTR	29208346	29208630	.	+	.	Parent=Os03t0720300-01
Chr03	irgsp1_rep	mRNA	29207955	29208674	.	+	.	ID=Os03t0720300-02;Name=Os03t0720300-02;Locus_id=Os03g0720300;Oryzabase Gene Symbol Synonym(s)=GDCi%2C OsGDCi;Oryzabase Gene Name Synonym(s)=GLU DECARBOXYLASE ISOZYME1%2C GLU DECARBOXYLASE ISOZYME 1%2C glutamate decarboxylase 1;Note=Similar to Glutamate decarboxylase.;Transcript_evidence=AK120961 (DDBJ%2C Best hit);ORF_evidence=B4F972 (UniProt);GO=Biological Process: glutamate metabolic process (GO:0006536),Biological Process: carboxylic acid metabolic process (GO:0019752),Molecular Function: glutamate decarboxylase activity (GO:0004351),Molecular Function: carboxy-lyase activity (GO:0016831),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent decarboxylase (IPR002129),Glutamate decarboxylase (IPR010107),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J023039L12;Oryzabase=22343;Expression=AK120961;TENOR=Os03t0720300-02;KEGG=Os03t0720300-02 (EC:4.1.1.15)
Chr03	irgsp1_rep	five_prime_UTR	29207955	29207955	.	+	.	Parent=Os03t0720300-02
Chr03	irgsp1_rep	CDS	29207956	29208345	.	+	0	Parent=Os03t0720300-02
Chr03	irgsp1_rep	three_prime_UTR	29208346	29208674	.	+	.	Parent=Os03t0720300-02
Chr03	irgsp1_rep	mRNA	29209969	29212204	.	+	.	ID=Os03t0720400-01;Name=Os03t0720400-01;Locus_id=Os03g0720400;Oryzabase Gene Symbol Synonym(s)=OsFbox170%2C Os_F0296;Oryzabase Gene Name Synonym(s)=F-box protein 170;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK067604 (DDBJ%2C Best hit);ORF_evidence=Q2R244 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Protein of unknown function DUF295 (IPR005174),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013112B07;Oryzabase=16959;Expression=AK067604;TENOR=Os03t0720400-01;KEGG=Os03t0720400-01
Chr03	irgsp1_rep	five_prime_UTR	29209969	29210225	.	+	.	Parent=Os03t0720400-01
Chr03	irgsp1_rep	five_prime_UTR	29210364	29210527	.	+	.	Parent=Os03t0720400-01
Chr03	irgsp1_rep	CDS	29210528	29211934	.	+	0	Parent=Os03t0720400-01
Chr03	irgsp1_rep	three_prime_UTR	29211935	29212204	.	+	.	Parent=Os03t0720400-01
Chr03	irgsp1_rep	mRNA	29212637	29215913	.	+	.	ID=Os03t0720500-00;Name=Os03t0720500-00;Locus_id=Os03g0720500;Note=Hypothetical conserved gene.;Transcript_evidence=AK251400 (DDBJ);ORF_evidence=B8BL90 (UniProt);GO=Molecular Function: hydrolase activity%2C acting on acid anhydrides (GO:0016817);InterPro=Root hair defective 3 GTP-binding (IPR008803);TENOR=Os03t0720500-00;KEGG=Os03t0720500-00
Chr03	irgsp1_rep	CDS	29212637	29212745	.	+	0	Parent=Os03t0720500-00
Chr03	irgsp1_rep	CDS	29213095	29213252	.	+	2	Parent=Os03t0720500-00
Chr03	irgsp1_rep	three_prime_UTR	29213253	29213258	.	+	.	Parent=Os03t0720500-00
Chr03	irgsp1_rep	three_prime_UTR	29213700	29213824	.	+	.	Parent=Os03t0720500-00
Chr03	irgsp1_rep	three_prime_UTR	29213962	29214224	.	+	.	Parent=Os03t0720500-00
Chr03	irgsp1_rep	three_prime_UTR	29214341	29214435	.	+	.	Parent=Os03t0720500-00
Chr03	irgsp1_rep	three_prime_UTR	29214501	29214671	.	+	.	Parent=Os03t0720500-00
Chr03	irgsp1_rep	three_prime_UTR	29214752	29214849	.	+	.	Parent=Os03t0720500-00
Chr03	irgsp1_rep	three_prime_UTR	29215148	29215241	.	+	.	Parent=Os03t0720500-00
Chr03	irgsp1_rep	three_prime_UTR	29215380	29215471	.	+	.	Parent=Os03t0720500-00
Chr03	irgsp1_rep	three_prime_UTR	29215767	29215913	.	+	.	Parent=Os03t0720500-00
Chr03	irgsp1_rep	mRNA	29236187	29238382	.	+	.	ID=Os03t0720800-01;Name=Os03t0720800-01;Locus_id=Os03g0720800;Oryzabase Gene Symbol Synonym(s)=OsMYB52%2C OsMYB52/54;Oryzabase Gene Name Synonym(s)=myb transcription factor 52%2C transcription factor MYB52;Note=Similar to MYB transcription factor R2R3 type.;Transcript_evidence=AK111560 (DDBJ%2C Best hit);ORF_evidence=C1KA89 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J013060F16;Oryzabase=19906;Expression=AK111560;TENOR=Os03t0720800-01;KEGG=Os03t0720800-01
Chr03	irgsp1_rep	five_prime_UTR	29236187	29236603	.	+	.	Parent=Os03t0720800-01
Chr03	irgsp1_rep	CDS	29236604	29236718	.	+	0	Parent=Os03t0720800-01
Chr03	irgsp1_rep	CDS	29237265	29237714	.	+	2	Parent=Os03t0720800-01
Chr03	irgsp1_rep	CDS	29237860	29238032	.	+	2	Parent=Os03t0720800-01
Chr03	irgsp1_rep	three_prime_UTR	29238033	29238382	.	+	.	Parent=Os03t0720800-01
Chr03	irgsp1_rep	mRNA	29260530	29272228	.	+	.	ID=Os03t0721200-01;Name=Os03t0721200-01;Locus_id=Os03g0721200;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK065408 (DDBJ%2C Best hit);ORF_evidence=Q6ASU8 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=HEAT (IPR000357),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),HEAT%2C type 2 (IPR021133);NIAS_FLcDNA=J013005O01;Expression=AK065408;TENOR=Os03t0721200-01;KEGG=Os03t0721200-01
Chr03	irgsp1_rep	five_prime_UTR	29260530	29260530	.	+	.	Parent=Os03t0721200-01
Chr03	irgsp1_rep	CDS	29260531	29260604	.	+	0	Parent=Os03t0721200-01
Chr03	irgsp1_rep	CDS	29261064	29261141	.	+	1	Parent=Os03t0721200-01
Chr03	irgsp1_rep	CDS	29261212	29261359	.	+	1	Parent=Os03t0721200-01
Chr03	irgsp1_rep	CDS	29261973	29262095	.	+	0	Parent=Os03t0721200-01
Chr03	irgsp1_rep	CDS	29262233	29262289	.	+	0	Parent=Os03t0721200-01
Chr03	irgsp1_rep	CDS	29262363	29262473	.	+	0	Parent=Os03t0721200-01
Chr03	irgsp1_rep	CDS	29262600	29262791	.	+	0	Parent=Os03t0721200-01
Chr03	irgsp1_rep	CDS	29262908	29263081	.	+	0	Parent=Os03t0721200-01
Chr03	irgsp1_rep	CDS	29263481	29263591	.	+	0	Parent=Os03t0721200-01
Chr03	irgsp1_rep	CDS	29263680	29263749	.	+	0	Parent=Os03t0721200-01
Chr03	irgsp1_rep	CDS	29263952	29264030	.	+	2	Parent=Os03t0721200-01
Chr03	irgsp1_rep	CDS	29264116	29264218	.	+	1	Parent=Os03t0721200-01
Chr03	irgsp1_rep	CDS	29264304	29264474	.	+	0	Parent=Os03t0721200-01
Chr03	irgsp1_rep	CDS	29264566	29264688	.	+	0	Parent=Os03t0721200-01
Chr03	irgsp1_rep	CDS	29264766	29264879	.	+	0	Parent=Os03t0721200-01
Chr03	irgsp1_rep	CDS	29265153	29265259	.	+	0	Parent=Os03t0721200-01
Chr03	irgsp1_rep	CDS	29265335	29265386	.	+	1	Parent=Os03t0721200-01
Chr03	irgsp1_rep	CDS	29265463	29265569	.	+	0	Parent=Os03t0721200-01
Chr03	irgsp1_rep	CDS	29265656	29265715	.	+	1	Parent=Os03t0721200-01
Chr03	irgsp1_rep	CDS	29265807	29265921	.	+	1	Parent=Os03t0721200-01
Chr03	irgsp1_rep	CDS	29266037	29266147	.	+	0	Parent=Os03t0721200-01
Chr03	irgsp1_rep	CDS	29266234	29266371	.	+	0	Parent=Os03t0721200-01
Chr03	irgsp1_rep	CDS	29266448	29266570	.	+	0	Parent=Os03t0721200-01
Chr03	irgsp1_rep	CDS	29266753	29266824	.	+	0	Parent=Os03t0721200-01
Chr03	irgsp1_rep	CDS	29266992	29267104	.	+	0	Parent=Os03t0721200-01
Chr03	irgsp1_rep	CDS	29268998	29269156	.	+	1	Parent=Os03t0721200-01
Chr03	irgsp1_rep	CDS	29269232	29269328	.	+	1	Parent=Os03t0721200-01
Chr03	irgsp1_rep	CDS	29269417	29269599	.	+	0	Parent=Os03t0721200-01
Chr03	irgsp1_rep	CDS	29270887	29271081	.	+	0	Parent=Os03t0721200-01
Chr03	irgsp1_rep	CDS	29271161	29271328	.	+	0	Parent=Os03t0721200-01
Chr03	irgsp1_rep	CDS	29271426	29271558	.	+	0	Parent=Os03t0721200-01
Chr03	irgsp1_rep	CDS	29271729	29271813	.	+	2	Parent=Os03t0721200-01
Chr03	irgsp1_rep	CDS	29271944	29271983	.	+	1	Parent=Os03t0721200-01
Chr03	irgsp1_rep	three_prime_UTR	29271984	29272228	.	+	.	Parent=Os03t0721200-01
Chr03	irgsp1_rep	mRNA	29267069	29272230	.	+	.	ID=Os03t0721200-02;Name=Os03t0721200-02;Locus_id=Os03g0721200;Note=Similar to HEAT repeat family protein%2C expressed.;Transcript_evidence=AK058251 (DDBJ%2C Best hit);ORF_evidence=Q10DS9 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=001-012-C02;Expression=AK058251;TENOR=Os03t0721200-02;KEGG=Os03t0721200-02
Chr03	irgsp1_rep	five_prime_UTR	29267069	29267069	.	+	.	Parent=Os03t0721200-02
Chr03	irgsp1_rep	CDS	29267070	29267104	.	+	0	Parent=Os03t0721200-02
Chr03	irgsp1_rep	CDS	29268998	29269156	.	+	1	Parent=Os03t0721200-02
Chr03	irgsp1_rep	CDS	29269232	29269328	.	+	1	Parent=Os03t0721200-02
Chr03	irgsp1_rep	CDS	29269417	29269599	.	+	0	Parent=Os03t0721200-02
Chr03	irgsp1_rep	CDS	29270887	29271081	.	+	0	Parent=Os03t0721200-02
Chr03	irgsp1_rep	CDS	29271161	29271328	.	+	0	Parent=Os03t0721200-02
Chr03	irgsp1_rep	CDS	29271426	29271558	.	+	0	Parent=Os03t0721200-02
Chr03	irgsp1_rep	CDS	29271729	29271813	.	+	2	Parent=Os03t0721200-02
Chr03	irgsp1_rep	CDS	29271944	29271983	.	+	1	Parent=Os03t0721200-02
Chr03	irgsp1_rep	three_prime_UTR	29271984	29272230	.	+	.	Parent=Os03t0721200-02
Chr03	irgsp1_rep	mRNA	29272374	29274638	.	-	.	ID=Os03t0721300-01;Name=Os03t0721300-01;Locus_id=Os03g0721300;Note=Protein of unknown function DUF946%2C plant family protein.;Transcript_evidence=AK072156 (DDBJ%2C Best hit);ORF_evidence=A2XLH5 (UniProt);InterPro=Vacuolar protein sorting-associated protein 62 (IPR009291);NIAS_FLcDNA=J013135K11;Expression=AK072156;TENOR=Os03t0721300-01;KEGG=Os03t0721300-01
Chr03	irgsp1_rep	five_prime_UTR	29274429	29274638	.	-	.	Parent=Os03t0721300-01
Chr03	irgsp1_rep	CDS	29274335	29274428	.	-	0	Parent=Os03t0721300-01
Chr03	irgsp1_rep	CDS	29272606	29274242	.	-	2	Parent=Os03t0721300-01
Chr03	irgsp1_rep	three_prime_UTR	29272374	29272605	.	-	.	Parent=Os03t0721300-01
Chr03	irgsp1_rep	mRNA	29275573	29278607	.	-	.	ID=Os03t0721400-01;Name=Os03t0721400-01;Locus_id=Os03g0721400;Note=Protein of unknown function DUF841%2C eukaryotic family protein.;Transcript_evidence=AK102605 (DDBJ%2C Best hit);ORF_evidence=NP_001149672.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Protein of unknown function DUF106%2C transmembrane (IPR002809),Uncharacterised conserved protein UCP023322%2C transmembrane eukaryotic (IPR008559);NIAS_FLcDNA=J033098O18;Expression=AK102605;TENOR=Os03t0721400-01;KEGG=Os03t0721400-01
Chr03	irgsp1_rep	five_prime_UTR	29278448	29278607	.	-	.	Parent=Os03t0721400-01
Chr03	irgsp1_rep	CDS	29277818	29278447	.	-	0	Parent=Os03t0721400-01
Chr03	irgsp1_rep	three_prime_UTR	29277817	29277817	.	-	.	Parent=Os03t0721400-01
Chr03	irgsp1_rep	three_prime_UTR	29275573	29275971	.	-	.	Parent=Os03t0721400-01
Chr03	irgsp1_rep	mRNA	29275729	29278578	.	-	.	ID=Os03t0721400-02;Name=Os03t0721400-02;Locus_id=Os03g0721400;Note=Protein of unknown function DUF841%2C eukaryotic family protein.;Transcript_evidence=AK106139 (DDBJ%2C Best hit),AK059834 (DDBJ%2C Best hit);ORF_evidence=NP_001149672.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Protein of unknown function DUF106%2C transmembrane (IPR002809),Uncharacterised conserved protein UCP023322%2C transmembrane eukaryotic (IPR008559);NIAS_FLcDNA=001-207-G07,006-206-B06;Expression=AK106139;TENOR=Os03t0721400-02;KEGG=Os03t0721400-02
Chr03	irgsp1_rep	five_prime_UTR	29278448	29278578	.	-	.	Parent=Os03t0721400-02
Chr03	irgsp1_rep	CDS	29277818	29278447	.	-	0	Parent=Os03t0721400-02
Chr03	irgsp1_rep	three_prime_UTR	29277817	29277817	.	-	.	Parent=Os03t0721400-02
Chr03	irgsp1_rep	three_prime_UTR	29275729	29275971	.	-	.	Parent=Os03t0721400-02
Chr03	irgsp1_rep	mRNA	29282870	29286464	.	-	.	ID=Os03t0721700-01;Name=Os03t0721700-01;Locus_id=Os03g0721700;Note=Conserved hypothetical protein.;Transcript_evidence=AK106706 (DDBJ%2C Best hit);ORF_evidence=Q53K30 (UniProt);NIAS_FLcDNA=002-114-E11;TENOR=Os03t0721700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	29286348	29286464	.	-	.	Parent=Os03t0721700-01
Chr03	irgsp1_rep	CDS	29286063	29286347	.	-	0	Parent=Os03t0721700-01
Chr03	irgsp1_rep	three_prime_UTR	29285262	29286062	.	-	.	Parent=Os03t0721700-01
Chr03	irgsp1_rep	three_prime_UTR	29283888	29284176	.	-	.	Parent=Os03t0721700-01
Chr03	irgsp1_rep	three_prime_UTR	29282870	29283265	.	-	.	Parent=Os03t0721700-01
Chr03	irgsp1_rep	mRNA	29291384	29292028	.	+	.	ID=Os03t0721900-00;Name=Os03t0721900-00;Locus_id=Os03g0721900;Note=Similar to Histone H2A.;Transcript_evidence=EU958597 (DDBJ);ORF_evidence=B6T543 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H2A (IPR002119),Histone core (IPR007125),Histone-fold (IPR009072);TENOR=Os03t0721900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	29291384	29291635	.	+	0	Parent=Os03t0721900-00
Chr03	irgsp1_rep	CDS	29291810	29292028	.	+	0	Parent=Os03t0721900-00
Chr03	irgsp1_rep	mRNA	29292697	29294090	.	-	.	ID=Os03t0722000-01;Name=Os03t0722000-01;Locus_id=Os03g0722000;Oryzabase Gene Symbol Synonym(s)=OsSTA112;Note=Hyccin domain containing protein.;Transcript_evidence=AK071718 (DDBJ%2C Best hit);ORF_evidence=A2XL36 (UniProt);InterPro=Hyccin (IPR018619);NIAS_FLcDNA=J023110O13;Oryzabase=19403;Expression=AK071718;TENOR=Os03t0722000-01;KEGG=Os03t0722000-01
Chr03	irgsp1_rep	five_prime_UTR	29293966	29294090	.	-	.	Parent=Os03t0722000-01
Chr03	irgsp1_rep	CDS	29292952	29293965	.	-	0	Parent=Os03t0722000-01
Chr03	irgsp1_rep	three_prime_UTR	29292697	29292951	.	-	.	Parent=Os03t0722000-01
Chr03	irgsp1_rep	mRNA	29292555	29293651	.	-	.	ID=Os03t0722000-02;Name=Os03t0722000-02;Locus_id=Os03g0722000;Oryzabase Gene Symbol Synonym(s)=OsSTA112;Note=Hypothetical conserved gene.;Transcript_evidence=AK069866 (DDBJ%2C Best hit);ORF_evidence=A3AM71 (UniProt);InterPro=Hyccin (IPR018619);NIAS_FLcDNA=J023040D14;Oryzabase=19403;Expression=AK069866;TENOR=Os03t0722000-02;KEGG=Os03t0722000-02
Chr03	irgsp1_rep	five_prime_UTR	29293651	29293651	.	-	.	Parent=Os03t0722000-02
Chr03	irgsp1_rep	CDS	29292952	29293650	.	-	0	Parent=Os03t0722000-02
Chr03	irgsp1_rep	three_prime_UTR	29292555	29292951	.	-	.	Parent=Os03t0722000-02
Chr03	irgsp1_rep	mRNA	29299399	29302083	.	+	.	ID=Os03t0722100-01;Name=Os03t0722100-01;Locus_id=Os03g0722100;Oryzabase Gene Symbol Synonym(s)=OsCHB706%2C CHB706;Oryzabase Gene Name Synonym(s)=SWIRM domain-containing protein CHB706;Note=SANT%2C eukarya domain containing protein.;Transcript_evidence=AK058989 (DDBJ%2C Best hit);ORF_evidence=Q10DS1 (UniProt);InterPro=SANT%2C eukarya (IPR017884);NIAS_FLcDNA=001-020-F03;Oryzabase=12520;Expression=AK058989;TENOR=Os03t0722100-01;KEGG=Os03t0722100-01
Chr03	irgsp1_rep	five_prime_UTR	29299399	29299399	.	+	.	Parent=Os03t0722100-01
Chr03	irgsp1_rep	CDS	29299400	29299942	.	+	0	Parent=Os03t0722100-01
Chr03	irgsp1_rep	CDS	29300020	29300186	.	+	0	Parent=Os03t0722100-01
Chr03	irgsp1_rep	CDS	29300264	29300529	.	+	1	Parent=Os03t0722100-01
Chr03	irgsp1_rep	CDS	29300614	29300799	.	+	2	Parent=Os03t0722100-01
Chr03	irgsp1_rep	CDS	29301368	29301564	.	+	2	Parent=Os03t0722100-01
Chr03	irgsp1_rep	CDS	29301653	29301901	.	+	0	Parent=Os03t0722100-01
Chr03	irgsp1_rep	three_prime_UTR	29301902	29302083	.	+	.	Parent=Os03t0722100-01
Chr03	irgsp1_rep	mRNA	29302852	29303463	.	-	.	ID=Os03t0722200-01;Name=Os03t0722200-01;Locus_id=Os03g0722200;Note=Hypothetical protein.;Transcript_evidence=AK068522 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J013157F04;TENOR=Os03t0722200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	29303165	29303463	.	-	.	Parent=Os03t0722200-01
Chr03	irgsp1_rep	CDS	29302955	29303164	.	-	0	Parent=Os03t0722200-01
Chr03	irgsp1_rep	three_prime_UTR	29302852	29302954	.	-	.	Parent=Os03t0722200-01
Chr03	irgsp1_rep	mRNA	29305425	29311650	.	+	.	ID=Os03t0722400-01;Name=Os03t0722400-01;Locus_id=Os03g0722400;RAP-DB Gene Symbol Synonym(s)=OsDDM1b;RAP-DB Gene Name Synonym(s)=Decrease in DNA Methylation 1b;Oryzabase Gene Symbol Synonym(s)=OsDDM1b%2C DDM1b%2C DDM1%2C DLN98%2C OsDLN98;Oryzabase Gene Name Synonym(s)=Decrease in DNA Methylation 1b%2C Deficient in DNA Methylation 1b%2C DECREASE IN DNA METHYLATION1b%2C DLN repressor 98%2C DLN motif protein 98;Note=Chromatin remodeling factor%2C Genome-wide DNA methylation;Transcript_evidence=AB177379;ORF_evidence=Q05KP5;GO=Molecular Function: ATP binding (GO:0005524);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),Helicase superfamily 1/2%2C ATP-binding domain (IPR014001),SNF2-related%2C N-terminal domain (IPR000330),Helicase%2C C-terminal (IPR001650);Manual Curation=July 15%2C 2016;Literature_PMID=22915302,27208249;Oryzabase=11855;TENOR=Os03t0722400-00
Chr03	irgsp1_rep	five_prime_UTR	29305425	29305680	.	+	.	Parent=Os03t0722400-01
Chr03	irgsp1_rep	five_prime_UTR	29306063	29306084	.	+	.	Parent=Os03t0722400-01
Chr03	irgsp1_rep	CDS	29306085	29306201	.	+	0	Parent=Os03t0722400-01
Chr03	irgsp1_rep	CDS	29306324	29306818	.	+	0	Parent=Os03t0722400-01
Chr03	irgsp1_rep	CDS	29306911	29307012	.	+	0	Parent=Os03t0722400-01
Chr03	irgsp1_rep	CDS	29307770	29308116	.	+	0	Parent=Os03t0722400-01
Chr03	irgsp1_rep	CDS	29308185	29308371	.	+	1	Parent=Os03t0722400-01
Chr03	irgsp1_rep	CDS	29308460	29308635	.	+	0	Parent=Os03t0722400-01
Chr03	irgsp1_rep	CDS	29309284	29309540	.	+	1	Parent=Os03t0722400-01
Chr03	irgsp1_rep	CDS	29309626	29309730	.	+	2	Parent=Os03t0722400-01
Chr03	irgsp1_rep	CDS	29309811	29309905	.	+	2	Parent=Os03t0722400-01
Chr03	irgsp1_rep	CDS	29310019	29310138	.	+	0	Parent=Os03t0722400-01
Chr03	irgsp1_rep	CDS	29310329	29310448	.	+	0	Parent=Os03t0722400-01
Chr03	irgsp1_rep	CDS	29310628	29310726	.	+	0	Parent=Os03t0722400-01
Chr03	irgsp1_rep	CDS	29310806	29310907	.	+	0	Parent=Os03t0722400-01
Chr03	irgsp1_rep	CDS	29311102	29311329	.	+	0	Parent=Os03t0722400-01
Chr03	irgsp1_rep	three_prime_UTR	29311330	29311650	.	+	.	Parent=Os03t0722400-01
Chr03	irgsp1_rep	mRNA	29312736	29315802	.	+	.	ID=Os03t0722500-01;Name=Os03t0722500-01;Locus_id=Os03g0722500;Note=Glycoside hydrolase%2C family 17 protein.;Transcript_evidence=AK099926 (DDBJ%2C Best hit);ORF_evidence=NP_001150853.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J013116N22;Expression=AK099926;TENOR=Os03t0722500-01;KEGG=Os03t0722500-01
Chr03	irgsp1_rep	five_prime_UTR	29312736	29313000	.	+	.	Parent=Os03t0722500-01
Chr03	irgsp1_rep	five_prime_UTR	29313119	29313247	.	+	.	Parent=Os03t0722500-01
Chr03	irgsp1_rep	CDS	29313248	29313323	.	+	0	Parent=Os03t0722500-01
Chr03	irgsp1_rep	CDS	29314468	29315738	.	+	2	Parent=Os03t0722500-01
Chr03	irgsp1_rep	three_prime_UTR	29315739	29315802	.	+	.	Parent=Os03t0722500-01
Chr03	irgsp1_rep	mRNA	29313181	29315805	.	+	.	ID=Os03t0722500-02;Name=Os03t0722500-02;Locus_id=Os03g0722500;Note=Glycoside hydrolase%2C family 17 protein.;Transcript_evidence=AK100108 (DDBJ%2C Best hit);ORF_evidence=NP_001150853.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J023004N24;Expression=AK100108;TENOR=Os03t0722500-02;KEGG=Os03t0722500-02
Chr03	irgsp1_rep	five_prime_UTR	29313181	29313247	.	+	.	Parent=Os03t0722500-02
Chr03	irgsp1_rep	CDS	29313248	29313323	.	+	0	Parent=Os03t0722500-02
Chr03	irgsp1_rep	CDS	29314468	29315738	.	+	2	Parent=Os03t0722500-02
Chr03	irgsp1_rep	three_prime_UTR	29315739	29315805	.	+	.	Parent=Os03t0722500-02
Chr03	irgsp1_rep	mRNA	29315930	29320722	.	-	.	ID=Os03t0722600-01;Name=Os03t0722600-01;Locus_id=Os03g0722600;CGSNL Gene Symbol=ACP;CGSNL Gene Name=ADENYLYL CYCLASE-ASSOCIATED PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsACP;Oryzabase Gene Name Synonym(s)=adenylyl cyclase-associated protein;Note=Adenylate cyclase-associated CAP domain containing protein.;Transcript_evidence=AK242106 (DDBJ%2C Best hit);ORF_evidence=Q53K24 (UniProt);GO=Biological Process: cell morphogenesis (GO:0000902),Biological Process: cytoskeleton organization (GO:0007010),Molecular Function: actin binding (GO:0003779),Molecular Function: binding (GO:0005488);InterPro=Adenylate cyclase-associated CAP (IPR001837),CARP motif (IPR006599),Adenylate cyclase-associated CAP%2C C-terminal (IPR013912),Adenylate cyclase-associated CAP%2C N-terminal (IPR013992),Cyclase-associated protein CAP/septum formation inhibitor MinC%2C C-terminal (IPR016098),C-CAP/cofactor C-like domain (IPR017901),CAP%2C conserved site (IPR018106);NIAS_FLcDNA=J075145A04;Oryzabase=22455;TENOR=Os03t0722600-01;KEGG=Os03t0722600-01
Chr03	irgsp1_rep	five_prime_UTR	29320703	29320722	.	-	.	Parent=Os03t0722600-01
Chr03	irgsp1_rep	CDS	29320409	29320702	.	-	0	Parent=Os03t0722600-01
Chr03	irgsp1_rep	CDS	29319759	29319930	.	-	0	Parent=Os03t0722600-01
Chr03	irgsp1_rep	CDS	29319596	29319660	.	-	2	Parent=Os03t0722600-01
Chr03	irgsp1_rep	CDS	29318636	29318960	.	-	0	Parent=Os03t0722600-01
Chr03	irgsp1_rep	CDS	29318360	29318528	.	-	2	Parent=Os03t0722600-01
Chr03	irgsp1_rep	CDS	29317681	29317790	.	-	1	Parent=Os03t0722600-01
Chr03	irgsp1_rep	CDS	29317532	29317587	.	-	2	Parent=Os03t0722600-01
Chr03	irgsp1_rep	CDS	29317374	29317430	.	-	0	Parent=Os03t0722600-01
Chr03	irgsp1_rep	CDS	29316495	29316638	.	-	0	Parent=Os03t0722600-01
Chr03	irgsp1_rep	CDS	29316156	29316242	.	-	0	Parent=Os03t0722600-01
Chr03	irgsp1_rep	three_prime_UTR	29315930	29316155	.	-	.	Parent=Os03t0722600-01
Chr03	irgsp1_rep	mRNA	29323875	29326305	.	+	.	ID=Os03t0722700-01;Name=Os03t0722700-01;Locus_id=Os03g0722700;Note=Conserved hypothetical protein.;Transcript_evidence=AK060978 (DDBJ%2C Best hit);ORF_evidence=A2XLI7 (UniProt);NIAS_FLcDNA=006-202-F11;TENOR=Os03t0722700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	29323875	29323974	.	+	.	Parent=Os03t0722700-01
Chr03	irgsp1_rep	CDS	29323975	29325019	.	+	0	Parent=Os03t0722700-01
Chr03	irgsp1_rep	CDS	29325103	29325206	.	+	2	Parent=Os03t0722700-01
Chr03	irgsp1_rep	three_prime_UTR	29325207	29325207	.	+	.	Parent=Os03t0722700-01
Chr03	irgsp1_rep	three_prime_UTR	29326094	29326305	.	+	.	Parent=Os03t0722700-01
Chr03	irgsp1_rep	mRNA	29329004	29336560	.	-	.	ID=Os03t0722800-01;Name=Os03t0722800-01;Locus_id=Os03g0722800;Oryzabase Gene Symbol Synonym(s)=OsFbox171%2C Os_F0153;Oryzabase Gene Name Synonym(s)=F-box protein 171;Note=Similar to F-box domain containing protein.;Transcript_evidence=AK065777 (DDBJ%2C Best hit);ORF_evidence=B6T9R0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013036N21;Oryzabase=16960;TENOR=Os03t0722800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	29335468	29336560	.	-	.	Parent=Os03t0722800-01
Chr03	irgsp1_rep	five_prime_UTR	29334176	29334250	.	-	.	Parent=Os03t0722800-01
Chr03	irgsp1_rep	five_prime_UTR	29333896	29334054	.	-	.	Parent=Os03t0722800-01
Chr03	irgsp1_rep	five_prime_UTR	29332658	29332671	.	-	.	Parent=Os03t0722800-01
Chr03	irgsp1_rep	CDS	29332616	29332657	.	-	0	Parent=Os03t0722800-01
Chr03	irgsp1_rep	CDS	29331580	29332479	.	-	0	Parent=Os03t0722800-01
Chr03	irgsp1_rep	CDS	29331329	29331484	.	-	0	Parent=Os03t0722800-01
Chr03	irgsp1_rep	CDS	29329276	29329566	.	-	0	Parent=Os03t0722800-01
Chr03	irgsp1_rep	three_prime_UTR	29329004	29329275	.	-	.	Parent=Os03t0722800-01
Chr03	irgsp1_rep	mRNA	29331091	29336543	.	-	.	ID=Os03t0722800-02;Name=Os03t0722800-02;Locus_id=Os03g0722800;Oryzabase Gene Symbol Synonym(s)=OsFbox171%2C Os_F0153;Oryzabase Gene Name Synonym(s)=F-box protein 171;Note=Similar to F-box domain containing protein.;Transcript_evidence=AK121349 (DDBJ%2C Best hit);ORF_evidence=Q10DR5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023121K16;Oryzabase=16960;Expression=AK121349;TENOR=Os03t0722800-02;KEGG=Os03t0722800-02
Chr03	irgsp1_rep	five_prime_UTR	29336154	29336543	.	-	.	Parent=Os03t0722800-02
Chr03	irgsp1_rep	five_prime_UTR	29335468	29335528	.	-	.	Parent=Os03t0722800-02
Chr03	irgsp1_rep	five_prime_UTR	29334176	29334250	.	-	.	Parent=Os03t0722800-02
Chr03	irgsp1_rep	five_prime_UTR	29333896	29334054	.	-	.	Parent=Os03t0722800-02
Chr03	irgsp1_rep	five_prime_UTR	29332658	29332671	.	-	.	Parent=Os03t0722800-02
Chr03	irgsp1_rep	CDS	29332616	29332657	.	-	0	Parent=Os03t0722800-02
Chr03	irgsp1_rep	CDS	29331580	29332479	.	-	0	Parent=Os03t0722800-02
Chr03	irgsp1_rep	CDS	29331200	29331484	.	-	0	Parent=Os03t0722800-02
Chr03	irgsp1_rep	three_prime_UTR	29331091	29331199	.	-	.	Parent=Os03t0722800-02
Chr03	irgsp1_rep	mRNA	29370719	29372888	.	+	.	ID=Os03t0723000-01;Name=Os03t0723000-01;Locus_id=Os03g0723000;RAP-DB Gene Symbol Synonym(s)=OsGRAS19%2C D26%2C Os-SCL7;RAP-DB Gene Name Synonym(s)=SCARECROW-LIKE7;CGSNL Gene Symbol=GRAS19;CGSNL Gene Name=GRAS PROTEIN 19;Oryzabase Gene Symbol Synonym(s)=OsSCRL%2C SCRL%2C Os-SCL7%2C OsSCL7%2C SCL7%2C OsGRAS-19%2C OsGRAS19%2C GRAS-19;Oryzabase Gene Name Synonym(s)=SCARECROW-LIKE7%2C SCARECROW-LIKE 7%2C GRAS protein 19;Note=Transcription factor%2C GRAS protein%2C Regulation of grain shape;Transcript_evidence=AK101603;ORF_evidence=Q53K16;InterPro=Transcription factor GRAS (IPR005202);NIAS_FLcDNA=J033051K20;Manual Curation=April 27%2C 2020;Literature_PMID=31146805,27081181;Oryzabase=19061;Expression=AK101603;TENOR=Os03t0723000-01;KEGG=Os03t0723000-01
Chr03	irgsp1_rep	five_prime_UTR	29370719	29370988	.	+	.	Parent=Os03t0723000-01
Chr03	irgsp1_rep	CDS	29370989	29372725	.	+	0	Parent=Os03t0723000-01
Chr03	irgsp1_rep	three_prime_UTR	29372726	29372888	.	+	.	Parent=Os03t0723000-01
Chr03	irgsp1_rep	mRNA	29370897	29372880	.	+	.	ID=Os03t0723000-02;Name=Os03t0723000-02;Locus_id=Os03g0723000;CGSNL Gene Symbol=GRAS19;CGSNL Gene Name=GRAS PROTEIN 19;Oryzabase Gene Symbol Synonym(s)=OsSCRL%2C SCRL%2C Os-SCL7%2C OsSCL7%2C SCL7%2C OsGRAS-19%2C OsGRAS19%2C GRAS-19;Oryzabase Gene Name Synonym(s)=SCARECROW-LIKE7%2C SCARECROW-LIKE 7%2C GRAS protein 19;Note=GRAS transcription factor domain containing protein.;Transcript_evidence=AK102857 (DDBJ%2C Best hit),AK064022 (DDBJ%2C Best hit);ORF_evidence=NP_201478.1 (RefSeq);InterPro=Transcription factor GRAS (IPR005202);NIAS_FLcDNA=J033110P03,001-125-A04;Oryzabase=19061;Expression=AK102857;TENOR=Os03t0723000-02;KEGG=Os03t0723000-02
Chr03	irgsp1_rep	five_prime_UTR	29370897	29370988	.	+	.	Parent=Os03t0723000-02
Chr03	irgsp1_rep	CDS	29370989	29372725	.	+	0	Parent=Os03t0723000-02
Chr03	irgsp1_rep	three_prime_UTR	29372726	29372880	.	+	.	Parent=Os03t0723000-02
Chr03	irgsp1_rep	mRNA	29386204	29388055	.	+	.	ID=Os03t0723400-01;Name=Os03t0723400-01;Locus_id=Os03g0723400;Oryzabase Gene Symbol Synonym(s)=OsEnS-53;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 53;Note=Similar to UFG2.;Transcript_evidence=AK107276 (DDBJ%2C Best hit);ORF_evidence=E6Y2R7 (UniProt);NIAS_FLcDNA=002-126-A05;Oryzabase=18379;Expression=AK107276;TENOR=Os03t0723400-01;KEGG=Os03t0723400-01
Chr03	irgsp1_rep	five_prime_UTR	29386204	29386248	.	+	.	Parent=Os03t0723400-01
Chr03	irgsp1_rep	CDS	29386249	29386562	.	+	0	Parent=Os03t0723400-01
Chr03	irgsp1_rep	CDS	29386653	29386780	.	+	1	Parent=Os03t0723400-01
Chr03	irgsp1_rep	CDS	29387596	29387675	.	+	2	Parent=Os03t0723400-01
Chr03	irgsp1_rep	three_prime_UTR	29387676	29388055	.	+	.	Parent=Os03t0723400-01
Chr03	irgsp1_rep	mRNA	29397649	29401365	.	+	.	ID=Os03t0723600-01;Name=Os03t0723600-01;Locus_id=Os03g0723600;Note=Conserved hypothetical protein.;Transcript_evidence=AK067666 (DDBJ%2C Best hit);ORF_evidence=A2XLJ2 (UniProt);NIAS_FLcDNA=J013119H13;Expression=AK067666;TENOR=Os03t0723600-01;KEGG=Os03t0723600-01
Chr03	irgsp1_rep	five_prime_UTR	29397649	29397766	.	+	.	Parent=Os03t0723600-01
Chr03	irgsp1_rep	CDS	29397767	29398924	.	+	0	Parent=Os03t0723600-01
Chr03	irgsp1_rep	CDS	29400808	29401086	.	+	0	Parent=Os03t0723600-01
Chr03	irgsp1_rep	three_prime_UTR	29401087	29401365	.	+	.	Parent=Os03t0723600-01
Chr03	irgsp1_rep	mRNA	29397708	29401258	.	+	.	ID=Os03t0723600-02;Name=Os03t0723600-02;Locus_id=Os03g0723600;Note=Conserved hypothetical protein.;Transcript_evidence=AK104988 (DDBJ%2C Best hit);ORF_evidence=A2XLJ2 (UniProt);NIAS_FLcDNA=001-001-B08;Expression=AK104988;TENOR=Os03t0723600-02;KEGG=Os03t0723600-02
Chr03	irgsp1_rep	five_prime_UTR	29397708	29397766	.	+	.	Parent=Os03t0723600-02
Chr03	irgsp1_rep	CDS	29397767	29398924	.	+	0	Parent=Os03t0723600-02
Chr03	irgsp1_rep	CDS	29400808	29401086	.	+	0	Parent=Os03t0723600-02
Chr03	irgsp1_rep	three_prime_UTR	29401087	29401258	.	+	.	Parent=Os03t0723600-02
Chr03	irgsp1_rep	mRNA	29401966	29403115	.	-	.	ID=Os03t0723700-01;Name=Os03t0723700-01;Locus_id=Os03g0723700;Note=Conserved hypothetical protein.;Transcript_evidence=AK101260 (DDBJ%2C Best hit);ORF_evidence=NP_001143937.1 (RefSeq);NIAS_FLcDNA=J033032I06;TENOR=Os03t0723700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	29402840	29403115	.	-	.	Parent=Os03t0723700-01
Chr03	irgsp1_rep	five_prime_UTR	29402785	29402796	.	-	.	Parent=Os03t0723700-01
Chr03	irgsp1_rep	CDS	29402266	29402784	.	-	0	Parent=Os03t0723700-01
Chr03	irgsp1_rep	three_prime_UTR	29401966	29402265	.	-	.	Parent=Os03t0723700-01
Chr03	irgsp1_rep	mRNA	29402029	29403025	.	+	.	ID=Os03t0723800-01;Name=Os03t0723800-01;Locus_id=Os03g0723800;Note=Hypothetical protein.;Transcript_evidence=AK110710 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-170-C12;TENOR=Os03t0723800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	29402029	29402199	.	+	.	Parent=Os03t0723800-01
Chr03	irgsp1_rep	CDS	29402200	29403025	.	+	0	Parent=Os03t0723800-01
Chr03	irgsp1_rep	mRNA	29411791	29412115	.	-	.	ID=Os03t0724000-00;Name=Os03t0724000-00;Locus_id=Os03g0724000;Note=Similar to flavonol-3-O-glycoside-7-O-glucosyltransferase 1.;Transcript_evidence=EU968477 (DDBJ);ORF_evidence=NP_001151546.1 (RefSeq);TENOR=Os03t0724000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	29412013	29412115	.	-	.	Parent=Os03t0724000-00
Chr03	irgsp1_rep	CDS	29411791	29412012	.	-	0	Parent=Os03t0724000-00
Chr03	irgsp1_rep	mRNA	29421194	29425439	.	+	.	ID=Os03t0724100-01;Name=Os03t0724100-01;Locus_id=Os03g0724100;Note=Phosphatidylinositol transfer protein-like%2C N-terminal domain containing protein.;Transcript_evidence=AK068261 (DDBJ%2C Best hit);ORF_evidence=NP_177653.1 (RefSeq);InterPro=Cellular retinaldehyde-binding/triple function%2C C-terminal (IPR001251),Cellular retinaldehyde-binding/triple function%2C N-terminal (IPR008273),Phosphatidylinositol transfer protein-like%2C N-terminal (IPR011074);NIAS_FLcDNA=J013149C21;Expression=AK068261;TENOR=Os03t0724100-01;KEGG=Os03t0724100-01
Chr03	irgsp1_rep	five_prime_UTR	29421194	29421317	.	+	.	Parent=Os03t0724100-01
Chr03	irgsp1_rep	five_prime_UTR	29423588	29423617	.	+	.	Parent=Os03t0724100-01
Chr03	irgsp1_rep	CDS	29423618	29423686	.	+	0	Parent=Os03t0724100-01
Chr03	irgsp1_rep	CDS	29423991	29424167	.	+	0	Parent=Os03t0724100-01
Chr03	irgsp1_rep	CDS	29424274	29424372	.	+	0	Parent=Os03t0724100-01
Chr03	irgsp1_rep	CDS	29424458	29424703	.	+	0	Parent=Os03t0724100-01
Chr03	irgsp1_rep	CDS	29424851	29425159	.	+	0	Parent=Os03t0724100-01
Chr03	irgsp1_rep	three_prime_UTR	29425160	29425439	.	+	.	Parent=Os03t0724100-01
Chr03	irgsp1_rep	mRNA	29426411	29430915	.	-	.	ID=Os03t0724300-01;Name=Os03t0724300-01;Locus_id=Os03g0724300;Note=Tyrosine protein kinase domain containing protein.;Transcript_evidence=AK243396 (DDBJ%2C Best hit);ORF_evidence=XP_002463962.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J100064F03;TENOR=Os03t0724300-01;KEGG=Os03t0724300-01
Chr03	irgsp1_rep	five_prime_UTR	29430451	29430915	.	-	.	Parent=Os03t0724300-01
Chr03	irgsp1_rep	CDS	29428751	29430450	.	-	0	Parent=Os03t0724300-01
Chr03	irgsp1_rep	CDS	29427954	29428082	.	-	1	Parent=Os03t0724300-01
Chr03	irgsp1_rep	CDS	29427504	29427526	.	-	1	Parent=Os03t0724300-01
Chr03	irgsp1_rep	CDS	29426766	29427343	.	-	2	Parent=Os03t0724300-01
Chr03	irgsp1_rep	three_prime_UTR	29426411	29426765	.	-	.	Parent=Os03t0724300-01
Chr03	irgsp1_rep	mRNA	29426851	29429169	.	+	.	ID=Os03t0724400-00;Name=Os03t0724400-00;Locus_id=Os03g0724400;Note=Non-protein coding transcript.;Transcript_evidence=tplb0046o04 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os03t0724400-00
Chr03	irgsp1_rep	exon	29426851	29427358	.	+	.	Parent=Os03t0724400-00
Chr03	irgsp1_rep	exon	29427943	29428078	.	+	.	Parent=Os03t0724400-00
Chr03	irgsp1_rep	exon	29428744	29429169	.	+	.	Parent=Os03t0724400-00
Chr03	irgsp1_rep	mRNA	29448215	29450245	.	-	.	ID=Os03t0724500-01;Name=Os03t0724500-01;Locus_id=Os03g0724500;Note=Conserved hypothetical protein.;Transcript_evidence=AK121328 (DDBJ%2C Best hit);ORF_evidence=Q6ZCE2 (UniProt);NIAS_FLcDNA=J023117N12;TENOR=Os03t0724500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	29450090	29450245	.	-	.	Parent=Os03t0724500-01
Chr03	irgsp1_rep	CDS	29450073	29450089	.	-	0	Parent=Os03t0724500-01
Chr03	irgsp1_rep	CDS	29448623	29448818	.	-	1	Parent=Os03t0724500-01
Chr03	irgsp1_rep	CDS	29448422	29448520	.	-	0	Parent=Os03t0724500-01
Chr03	irgsp1_rep	three_prime_UTR	29448215	29448421	.	-	.	Parent=Os03t0724500-01
Chr03	irgsp1_rep	mRNA	29451126	29453520	.	-	.	ID=Os03t0724600-01;Name=Os03t0724600-01;Locus_id=Os03g0724600;Note=Conserved hypothetical protein.;Transcript_evidence=AK063718 (DDBJ%2C Best hit);ORF_evidence=Q75GV4 (UniProt);NIAS_FLcDNA=001-120-C09;Expression=AK063718;TENOR=Os03t0724600-01;KEGG=Os03t0724600-01
Chr03	irgsp1_rep	five_prime_UTR	29453520	29453520	.	-	.	Parent=Os03t0724600-01
Chr03	irgsp1_rep	CDS	29453274	29453519	.	-	0	Parent=Os03t0724600-01
Chr03	irgsp1_rep	CDS	29451541	29451627	.	-	0	Parent=Os03t0724600-01
Chr03	irgsp1_rep	three_prime_UTR	29451126	29451540	.	-	.	Parent=Os03t0724600-01
Chr03	irgsp1_rep	mRNA	29454977	29456650	.	+	.	ID=Os03t0724700-01;Name=Os03t0724700-01;Locus_id=Os03g0724700;Note=Similar to cDNA clone:002-104-C06%2C full insert sequence.;Transcript_evidence=AK108518 (DDBJ%2C Best hit);ORF_evidence=Q10DP6 (UniProt);GO=Cellular Component: cytoplasm (GO:0005737);InterPro=Maf-like protein (IPR003697);NIAS_FLcDNA=002-144-A12;Expression=AK108518;TENOR=Os03t0724700-01;KEGG=Os03t0724700-01
Chr03	irgsp1_rep	five_prime_UTR	29454977	29455166	.	+	.	Parent=Os03t0724700-01
Chr03	irgsp1_rep	CDS	29455167	29455217	.	+	0	Parent=Os03t0724700-01
Chr03	irgsp1_rep	CDS	29455326	29455397	.	+	0	Parent=Os03t0724700-01
Chr03	irgsp1_rep	CDS	29455513	29455587	.	+	0	Parent=Os03t0724700-01
Chr03	irgsp1_rep	CDS	29455718	29455801	.	+	0	Parent=Os03t0724700-01
Chr03	irgsp1_rep	CDS	29455894	29455963	.	+	0	Parent=Os03t0724700-01
Chr03	irgsp1_rep	CDS	29456060	29456169	.	+	2	Parent=Os03t0724700-01
Chr03	irgsp1_rep	three_prime_UTR	29456170	29456341	.	+	.	Parent=Os03t0724700-01
Chr03	irgsp1_rep	three_prime_UTR	29456440	29456650	.	+	.	Parent=Os03t0724700-01
Chr03	irgsp1_rep	mRNA	29455123	29457145	.	+	.	ID=Os03t0724700-02;Name=Os03t0724700-02;Locus_id=Os03g0724700;Note=Similar to cDNA clone:002-144-A12%2C full insert sequence.;Transcript_evidence=AK106475 (DDBJ%2C Best hit);ORF_evidence=Q10DP4 (UniProt);GO=Cellular Component: cytoplasm (GO:0005737);InterPro=Maf-like protein (IPR003697);NIAS_FLcDNA=002-104-C06;Expression=AK106475;TENOR=Os03t0724700-02;KEGG=Os03t0724700-02
Chr03	irgsp1_rep	five_prime_UTR	29455123	29455166	.	+	.	Parent=Os03t0724700-02
Chr03	irgsp1_rep	CDS	29455167	29455217	.	+	0	Parent=Os03t0724700-02
Chr03	irgsp1_rep	CDS	29455326	29455397	.	+	0	Parent=Os03t0724700-02
Chr03	irgsp1_rep	CDS	29455513	29455587	.	+	0	Parent=Os03t0724700-02
Chr03	irgsp1_rep	CDS	29455718	29455801	.	+	0	Parent=Os03t0724700-02
Chr03	irgsp1_rep	CDS	29455894	29456151	.	+	0	Parent=Os03t0724700-02
Chr03	irgsp1_rep	CDS	29456300	29456341	.	+	0	Parent=Os03t0724700-02
Chr03	irgsp1_rep	CDS	29456459	29456845	.	+	0	Parent=Os03t0724700-02
Chr03	irgsp1_rep	three_prime_UTR	29456846	29457145	.	+	.	Parent=Os03t0724700-02
Chr03	irgsp1_rep	mRNA	29455127	29457859	.	+	.	ID=Os03t0724700-03;Name=Os03t0724700-03;Locus_id=Os03g0724700;Note=Maf-like protein family protein.;Transcript_evidence=AK064412 (DDBJ%2C Best hit);ORF_evidence=Q10DP6 (UniProt);GO=Cellular Component: cytoplasm (GO:0005737);InterPro=Maf-like protein (IPR003697);NIAS_FLcDNA=002-110-A08;Expression=AK064412;TENOR=Os03t0724700-03;KEGG=Os03t0724700-03
Chr03	irgsp1_rep	five_prime_UTR	29455127	29455166	.	+	.	Parent=Os03t0724700-03
Chr03	irgsp1_rep	CDS	29455167	29455217	.	+	0	Parent=Os03t0724700-03
Chr03	irgsp1_rep	CDS	29455326	29455397	.	+	0	Parent=Os03t0724700-03
Chr03	irgsp1_rep	CDS	29455513	29455587	.	+	0	Parent=Os03t0724700-03
Chr03	irgsp1_rep	CDS	29455718	29455801	.	+	0	Parent=Os03t0724700-03
Chr03	irgsp1_rep	CDS	29455894	29455963	.	+	0	Parent=Os03t0724700-03
Chr03	irgsp1_rep	CDS	29456060	29456151	.	+	2	Parent=Os03t0724700-03
Chr03	irgsp1_rep	CDS	29456300	29456341	.	+	0	Parent=Os03t0724700-03
Chr03	irgsp1_rep	CDS	29456459	29456539	.	+	0	Parent=Os03t0724700-03
Chr03	irgsp1_rep	CDS	29456689	29456769	.	+	0	Parent=Os03t0724700-03
Chr03	irgsp1_rep	three_prime_UTR	29456770	29457859	.	+	.	Parent=Os03t0724700-03
Chr03	irgsp1_rep	mRNA	29457009	29458702	.	-	.	ID=Os03t0724800-01;Name=Os03t0724800-01;Locus_id=Os03g0724800;Note=Conserved hypothetical protein.;Transcript_evidence=AK106785 (DDBJ%2C Best hit);ORF_evidence=Q75GV6 (UniProt);NIAS_FLcDNA=002-115-H11;TENOR=Os03t0724800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	29458600	29458702	.	-	.	Parent=Os03t0724800-01
Chr03	irgsp1_rep	CDS	29458045	29458599	.	-	0	Parent=Os03t0724800-01
Chr03	irgsp1_rep	three_prime_UTR	29457009	29458044	.	-	.	Parent=Os03t0724800-01
Chr03	irgsp1_rep	mRNA	29462922	29465646	.	+	.	ID=Os03t0725000-01;Name=Os03t0725000-01;Locus_id=Os03g0725000;Oryzabase Gene Symbol Synonym(s)=OsRpl6-1;Oryzabase Gene Name Synonym(s)=mitochondrial ribosomal protein L6-1;Note=Mitochondrial 60S ribosomal protein L6.;Transcript_evidence=AK119694 (DDBJ%2C Best hit);ORF_evidence=NP_001159023.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735),Molecular Function: rRNA binding (GO:0019843);InterPro=Ribosomal protein L6 (IPR000702),Ribosomal protein L6%2C conserved site (IPR002358),Ribosomal protein L6%2C bacterial-type (IPR019906),Ribosomal protein L6%2C alpha-beta domain (IPR020040);NIAS_FLcDNA=002-157-C05;Oryzabase=9710;TENOR=Os03t0725000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	29462922	29463107	.	+	.	Parent=Os03t0725000-01
Chr03	irgsp1_rep	five_prime_UTR	29464931	29464982	.	+	.	Parent=Os03t0725000-01
Chr03	irgsp1_rep	CDS	29464983	29465294	.	+	0	Parent=Os03t0725000-01
Chr03	irgsp1_rep	three_prime_UTR	29465295	29465646	.	+	.	Parent=Os03t0725000-01
Chr03	irgsp1_rep	mRNA	29462968	29465691	.	+	.	ID=Os03t0725000-02;Name=Os03t0725000-02;Locus_id=Os03g0725000;Oryzabase Gene Symbol Synonym(s)=OsRpl6-1;Oryzabase Gene Name Synonym(s)=mitochondrial ribosomal protein L6-1;Note=Mitochondrial 60S ribosomal protein L6.;Transcript_evidence=AK059294 (DDBJ%2C Best hit);ORF_evidence=NP_001159023.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735),Molecular Function: rRNA binding (GO:0019843);InterPro=Ribosomal protein L6 (IPR000702),Ribosomal protein L6%2C conserved site (IPR002358),Ribosomal protein L6%2C bacterial-type (IPR019906),Ribosomal protein L6%2C alpha-beta domain (IPR020040);NIAS_FLcDNA=001-025-E08;Oryzabase=9710;Expression=AK059294;TENOR=Os03t0725000-02;KEGG=Os03t0725000-02
Chr03	irgsp1_rep	five_prime_UTR	29462968	29463107	.	+	.	Parent=Os03t0725000-02
Chr03	irgsp1_rep	five_prime_UTR	29464931	29464982	.	+	.	Parent=Os03t0725000-02
Chr03	irgsp1_rep	CDS	29464983	29465294	.	+	0	Parent=Os03t0725000-02
Chr03	irgsp1_rep	three_prime_UTR	29465295	29465691	.	+	.	Parent=Os03t0725000-02
Chr03	irgsp1_rep	mRNA	29467591	29468655	.	+	.	ID=Os03t0725050-01;Name=Os03t0725050-01;Locus_id=Os03g0725050;Note=Conserved hypothetical protein.;Transcript_evidence=AK243215 (DDBJ%2C Best hit);ORF_evidence=NP_001173625.1 (RefSeq);NIAS_FLcDNA=J100043D19;TENOR=Os03t0725050-01;KEGG=Os03t0725050-01
Chr03	irgsp1_rep	five_prime_UTR	29467591	29467682	.	+	.	Parent=Os03t0725050-01
Chr03	irgsp1_rep	CDS	29467683	29468540	.	+	0	Parent=Os03t0725050-01
Chr03	irgsp1_rep	three_prime_UTR	29468541	29468655	.	+	.	Parent=Os03t0725050-01
Chr03	irgsp1_rep	mRNA	29474212	29477432	.	+	.	ID=Os03t0725100-01;Name=Os03t0725100-01;Locus_id=Os03g0725100;Note=Conserved hypothetical protein.;Transcript_evidence=AK119472 (DDBJ%2C Best hit);ORF_evidence=Q6AU09 (UniProt);NIAS_FLcDNA=001-134-A12;Expression=AK119472;TENOR=Os03t0725100-01;KEGG=Os03t0725100-01
Chr03	irgsp1_rep	five_prime_UTR	29474212	29474212	.	+	.	Parent=Os03t0725100-01
Chr03	irgsp1_rep	CDS	29474213	29475628	.	+	0	Parent=Os03t0725100-01
Chr03	irgsp1_rep	CDS	29476667	29477236	.	+	0	Parent=Os03t0725100-01
Chr03	irgsp1_rep	three_prime_UTR	29477237	29477432	.	+	.	Parent=Os03t0725100-01
Chr03	irgsp1_rep	mRNA	29475273	29478019	.	+	.	ID=Os03t0725100-02;Name=Os03t0725100-02;Locus_id=Os03g0725100;Note=Hypothetical conserved gene.;Transcript_evidence=AK064260 (DDBJ%2C Best hit);ORF_evidence=Q6AU09 (UniProt);NIAS_FLcDNA=002-105-D04;Expression=AK064260;TENOR=Os03t0725100-02;KEGG=Os03t0725100-02
Chr03	irgsp1_rep	five_prime_UTR	29475273	29475274	.	+	.	Parent=Os03t0725100-02
Chr03	irgsp1_rep	CDS	29475275	29475628	.	+	0	Parent=Os03t0725100-02
Chr03	irgsp1_rep	CDS	29476667	29477236	.	+	0	Parent=Os03t0725100-02
Chr03	irgsp1_rep	three_prime_UTR	29477237	29478019	.	+	.	Parent=Os03t0725100-02
Chr03	irgsp1_rep	mRNA	29479234	29479879	.	+	.	ID=Os03t0725200-01;Name=Os03t0725200-01;Locus_id=Os03g0725200;Oryzabase Gene Name Synonym(s)=Formin-like protein;Note=Hypothetical protein.;Transcript_evidence=AK106493 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=002-105-B05;Oryzabase=22524;Expression=AK106493;TENOR=Os03t0725200-01;KEGG=Os03t0725200-01
Chr03	irgsp1_rep	five_prime_UTR	29479234	29479339	.	+	.	Parent=Os03t0725200-01
Chr03	irgsp1_rep	CDS	29479340	29479690	.	+	0	Parent=Os03t0725200-01
Chr03	irgsp1_rep	three_prime_UTR	29479691	29479879	.	+	.	Parent=Os03t0725200-01
Chr03	irgsp1_rep	mRNA	29480319	29484774	.	+	.	ID=Os03t0725300-01;Name=Os03t0725300-01;Locus_id=Os03g0725300;Note=Metallophosphoesterase domain containing protein.;Transcript_evidence=AK073636 (DDBJ%2C Best hit);ORF_evidence=Q6AU07 (UniProt);GO=Biological Process: mRNA processing (GO:0006397),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Metallophosphoesterase domain (IPR004843),Lariat debranching enzyme%2C C-terminal (IPR007708);NIAS_FLcDNA=J033050L15;Expression=AK073636;TENOR=Os03t0725300-01;KEGG=Os03t0725300-01
Chr03	irgsp1_rep	five_prime_UTR	29480319	29480477	.	+	.	Parent=Os03t0725300-01
Chr03	irgsp1_rep	CDS	29480478	29480483	.	+	0	Parent=Os03t0725300-01
Chr03	irgsp1_rep	CDS	29480607	29480723	.	+	0	Parent=Os03t0725300-01
Chr03	irgsp1_rep	CDS	29481175	29481332	.	+	0	Parent=Os03t0725300-01
Chr03	irgsp1_rep	CDS	29481896	29482015	.	+	1	Parent=Os03t0725300-01
Chr03	irgsp1_rep	CDS	29482184	29482379	.	+	1	Parent=Os03t0725300-01
Chr03	irgsp1_rep	CDS	29483085	29483267	.	+	0	Parent=Os03t0725300-01
Chr03	irgsp1_rep	CDS	29483370	29483488	.	+	0	Parent=Os03t0725300-01
Chr03	irgsp1_rep	CDS	29483601	29483740	.	+	1	Parent=Os03t0725300-01
Chr03	irgsp1_rep	CDS	29484075	29484155	.	+	2	Parent=Os03t0725300-01
Chr03	irgsp1_rep	CDS	29484504	29484607	.	+	2	Parent=Os03t0725300-01
Chr03	irgsp1_rep	three_prime_UTR	29484608	29484774	.	+	.	Parent=Os03t0725300-01
Chr03	irgsp1_rep	mRNA	29480355	29484892	.	+	.	ID=Os03t0725300-02;Name=Os03t0725300-02;Locus_id=Os03g0725300;Note=Similar to Dbr1-prov protein.;Transcript_evidence=AK063969 (DDBJ%2C Best hit);ORF_evidence=B7EMG7 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Metallophosphoesterase domain (IPR004843);NIAS_FLcDNA=001-124-B02;Expression=AK063969;TENOR=Os03t0725300-02;KEGG=Os03t0725300-02
Chr03	irgsp1_rep	five_prime_UTR	29480355	29480477	.	+	.	Parent=Os03t0725300-02
Chr03	irgsp1_rep	CDS	29480478	29480483	.	+	0	Parent=Os03t0725300-02
Chr03	irgsp1_rep	CDS	29480607	29480723	.	+	0	Parent=Os03t0725300-02
Chr03	irgsp1_rep	CDS	29481175	29481277	.	+	0	Parent=Os03t0725300-02
Chr03	irgsp1_rep	CDS	29481917	29482015	.	+	2	Parent=Os03t0725300-02
Chr03	irgsp1_rep	CDS	29482184	29482185	.	+	2	Parent=Os03t0725300-02
Chr03	irgsp1_rep	three_prime_UTR	29482186	29482379	.	+	.	Parent=Os03t0725300-02
Chr03	irgsp1_rep	three_prime_UTR	29483085	29483267	.	+	.	Parent=Os03t0725300-02
Chr03	irgsp1_rep	three_prime_UTR	29483370	29483488	.	+	.	Parent=Os03t0725300-02
Chr03	irgsp1_rep	three_prime_UTR	29483601	29483740	.	+	.	Parent=Os03t0725300-02
Chr03	irgsp1_rep	three_prime_UTR	29484075	29484155	.	+	.	Parent=Os03t0725300-02
Chr03	irgsp1_rep	three_prime_UTR	29484504	29484892	.	+	.	Parent=Os03t0725300-02
Chr03	irgsp1_rep	mRNA	29486017	29489810	.	+	.	ID=Os03t0725400-01;Name=Os03t0725400-01;Locus_id=Os03g0725400;Oryzabase Gene Symbol Synonym(s)=OsWD40-86%2C WD40-86%2C OsWDR5a%2C WDR5a%2C OsWDR5%2C WDR5;Oryzabase Gene Name Synonym(s)=WD repeat domain 5;Note=Similar to WD-repeat protein 5 (BMP2-induced 3-kb gene protein) (WD-repeat protein BIG-3).;Transcript_evidence=AK111860 (DDBJ%2C Best hit);ORF_evidence=B8AR39 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J033025A12;Oryzabase=10767;Expression=AK111860;TENOR=Os03t0725400-01;KEGG=Os03t0725400-01
Chr03	irgsp1_rep	five_prime_UTR	29486017	29486122	.	+	.	Parent=Os03t0725400-01
Chr03	irgsp1_rep	CDS	29486123	29486788	.	+	0	Parent=Os03t0725400-01
Chr03	irgsp1_rep	CDS	29489234	29489542	.	+	0	Parent=Os03t0725400-01
Chr03	irgsp1_rep	three_prime_UTR	29489543	29489810	.	+	.	Parent=Os03t0725400-01
Chr03	irgsp1_rep	mRNA	29486058	29490529	.	+	.	ID=Os03t0725400-02;Name=Os03t0725400-02;Locus_id=Os03g0725400;RAP-DB Gene Symbol Synonym(s)=OsWDR5a;Oryzabase Gene Symbol Synonym(s)=OsWD40-86%2C WD40-86%2C OsWDR5a%2C WDR5a%2C OsWDR5%2C WDR5;Oryzabase Gene Name Synonym(s)=WD repeat domain 5;Note=WD40 protein%2C Promotion of flowering%2C Panicle development;Transcript_evidence=AK105499;ORF_evidence=Q10DN8;GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40/YVTN repeat-like-containing domain superfamily (IPR015943),WD40-repeat-containing domain superfamily (IPR036322),WD40-repeat-containing domain (IPR017986),WD40 repeat (IPR001680),G-protein beta WD-40 repeat (IPR020472),WD40 repeat%2C conserved site (IPR019775);NIAS_FLcDNA=001-127-D02;Manual Curation=April 5%2C 2018;Literature_PMID=29440594;Oryzabase=10767;Expression=AK105499;TENOR=Os03t0725400-02
Chr03	irgsp1_rep	five_prime_UTR	29486058	29486122	.	+	.	Parent=Os03t0725400-02
Chr03	irgsp1_rep	CDS	29486123	29486788	.	+	0	Parent=Os03t0725400-02
Chr03	irgsp1_rep	CDS	29489234	29489542	.	+	0	Parent=Os03t0725400-02
Chr03	irgsp1_rep	three_prime_UTR	29490220	29490529	.	+	.	Parent=Os03t0725400-02
Chr03	irgsp1_rep	mRNA	29486077	29489817	.	+	.	ID=Os03t0725400-03;Name=Os03t0725400-03;Locus_id=Os03g0725400;Oryzabase Gene Symbol Synonym(s)=OsWD40-86%2C WD40-86%2C OsWDR5a%2C WDR5a%2C OsWDR5%2C WDR5;Oryzabase Gene Name Synonym(s)=WD repeat domain 5;Note=Similar to WD-repeat protein 5 (BMP2-induced 3-kb gene protein) (WD-repeat protein BIG-3).;Transcript_evidence=AK112085 (DDBJ%2C Best hit);ORF_evidence=B8AR39 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=002-102-C04;Oryzabase=10767;Expression=AK112085;TENOR=Os03t0725400-03;KEGG=Os03t0725400-03
Chr03	irgsp1_rep	five_prime_UTR	29486077	29486122	.	+	.	Parent=Os03t0725400-03
Chr03	irgsp1_rep	CDS	29486123	29486788	.	+	0	Parent=Os03t0725400-03
Chr03	irgsp1_rep	CDS	29489234	29489542	.	+	0	Parent=Os03t0725400-03
Chr03	irgsp1_rep	three_prime_UTR	29489543	29489817	.	+	.	Parent=Os03t0725400-03
Chr03	irgsp1_rep	mRNA	29487579	29490095	.	-	.	ID=Os03t0725601-01;Name=Os03t0725601-01;Locus_id=Os03g0725601;Note=Non-protein coding transcript.;Transcript_evidence=AK288931 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090082H18;TENOR=Os03t0725601-01
Chr03	irgsp1_rep	exon	29487579	29490095	.	-	.	Parent=Os03t0725601-01
Chr03	irgsp1_rep	mRNA	29516834	29519083	.	+	.	ID=Os03t0725800-01;Name=Os03t0725800-01;Locus_id=Os03g0725800;Oryzabase Gene Symbol Synonym(s)=OsbHLH018;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 018;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=AK120539 (DDBJ%2C Best hit);ORF_evidence=NP_001147789.1 (RefSeq);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J013129F07;Oryzabase=15309;Expression=AK120539;TENOR=Os03t0725800-01;KEGG=Os03t0725800-01
Chr03	irgsp1_rep	five_prime_UTR	29516834	29516912	.	+	.	Parent=Os03t0725800-01
Chr03	irgsp1_rep	CDS	29516913	29516939	.	+	0	Parent=Os03t0725800-01
Chr03	irgsp1_rep	CDS	29517030	29517629	.	+	0	Parent=Os03t0725800-01
Chr03	irgsp1_rep	CDS	29517734	29518111	.	+	0	Parent=Os03t0725800-01
Chr03	irgsp1_rep	CDS	29518209	29518283	.	+	0	Parent=Os03t0725800-01
Chr03	irgsp1_rep	three_prime_UTR	29518284	29519083	.	+	.	Parent=Os03t0725800-01
Chr03	irgsp1_rep	mRNA	29526118	29529001	.	+	.	ID=Os03t0726100-01;Name=Os03t0726100-01;Locus_id=Os03g0726100;CGSNL Gene Symbol=TUBA3;CGSNL Gene Name=TUBULIN ALPHA-3 CHAIN;Oryzabase Gene Symbol Synonym(s)=OsTubA3%2C TubA3%2C OS-TubA1%2C TubA1;Oryzabase Gene Name Synonym(s)=Tubulin alpha-3 chain%2C Tubulin alpha-3%2C tubulin alpha-1 chain;Note=Similar to Tubulin alpha-1 chain (Alpha-1 tubulin).;Transcript_evidence=AK102194 (DDBJ%2C Best hit),AK119247 (DDBJ%2C Best hit),AK119362 (DDBJ%2C Best hit),AK119638 (DDBJ%2C Best hit);ORF_evidence=Q9FVI3 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: microtubule-based process (GO:0007017),Biological Process: microtubule-based movement (GO:0007018),Biological Process: protein polymerization (GO:0051258),Cellular Component: microtubule (GO:0005874),Cellular Component: protein complex (GO:0043234),Molecular Function: GTPase activity (GO:0003924),Molecular Function: structural molecule activity (GO:0005198),Molecular Function: GTP binding (GO:0005525);InterPro=Tubulin (IPR000217),Alpha tubulin (IPR002452),Tubulin/FtsZ%2C GTPase domain (IPR003008),Tubulin/FtsZ%2C C-terminal (IPR008280),Tubulin%2C conserved site (IPR017975),Tubulin/FtsZ%2C 2-layer sandwich domain (IPR018316),Tubulin%2C C-terminal (IPR023123);NIAS_FLcDNA=J033087C05,001-121-C05,001-131-G09,002-130-F05;Oryzabase=14326;TENOR=Os03t0726100-01
Chr03	irgsp1_rep	five_prime_UTR	29526118	29526242	.	+	.	Parent=Os03t0726100-01
Chr03	irgsp1_rep	CDS	29526243	29526335	.	+	0	Parent=Os03t0726100-01
Chr03	irgsp1_rep	CDS	29527282	29527516	.	+	0	Parent=Os03t0726100-01
Chr03	irgsp1_rep	CDS	29527603	29527973	.	+	2	Parent=Os03t0726100-01
Chr03	irgsp1_rep	CDS	29528082	29528738	.	+	0	Parent=Os03t0726100-01
Chr03	irgsp1_rep	three_prime_UTR	29528739	29529001	.	+	.	Parent=Os03t0726100-01
Chr03	irgsp1_rep	mRNA	29527418	29528978	.	+	.	ID=Os03t0726100-02;Name=Os03t0726100-02;Locus_id=Os03g0726100;CGSNL Gene Symbol=TUBA3;CGSNL Gene Name=TUBULIN ALPHA-3 CHAIN;Oryzabase Gene Symbol Synonym(s)=OsTubA3%2C TubA3%2C OS-TubA1%2C TubA1;Oryzabase Gene Name Synonym(s)=Tubulin alpha-3 chain%2C Tubulin alpha-3%2C tubulin alpha-1 chain;Note=Similar to Alpha-tubulin.;Transcript_evidence=AK119520 (DDBJ%2C Best hit);ORF_evidence=Q9FVI3 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: microtubule-based process (GO:0007017),Biological Process: microtubule-based movement (GO:0007018),Biological Process: protein polymerization (GO:0051258),Cellular Component: microtubule (GO:0005874),Cellular Component: protein complex (GO:0043234),Molecular Function: GTPase activity (GO:0003924),Molecular Function: structural molecule activity (GO:0005198),Molecular Function: GTP binding (GO:0005525);InterPro=Tubulin (IPR000217),Alpha tubulin (IPR002452),Tubulin/FtsZ%2C GTPase domain (IPR003008),Tubulin/FtsZ%2C C-terminal (IPR008280),Tubulin%2C conserved site (IPR017975),Tubulin/FtsZ%2C 2-layer sandwich domain (IPR018316),Tubulin%2C C-terminal (IPR023123);NIAS_FLcDNA=001-202-D01;Oryzabase=14326;Expression=AK119520;TENOR=Os03t0726100-02;KEGG=Os03t0726100-02
Chr03	irgsp1_rep	five_prime_UTR	29527418	29527419	.	+	.	Parent=Os03t0726100-02
Chr03	irgsp1_rep	CDS	29527420	29527516	.	+	0	Parent=Os03t0726100-02
Chr03	irgsp1_rep	CDS	29527603	29527973	.	+	2	Parent=Os03t0726100-02
Chr03	irgsp1_rep	CDS	29528082	29528738	.	+	0	Parent=Os03t0726100-02
Chr03	irgsp1_rep	three_prime_UTR	29528739	29528978	.	+	.	Parent=Os03t0726100-02
Chr03	irgsp1_rep	mRNA	29527406	29527975	.	-	.	ID=Os03t0726150-00;Name=Os03t0726150-00;Locus_id=Os03g0726150;Note=Hypothetical gene.;Transcript_evidence=EU941142 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0726150-00
Chr03	irgsp1_rep	five_prime_UTR	29527974	29527975	.	-	.	Parent=Os03t0726150-00
Chr03	irgsp1_rep	CDS	29527601	29527973	.	-	0	Parent=Os03t0726150-00
Chr03	irgsp1_rep	CDS	29527406	29527508	.	-	2	Parent=Os03t0726150-00
Chr03	irgsp1_rep	mRNA	29535973	29542114	.	+	.	ID=Os03t0726200-01;Name=Os03t0726200-01;Locus_id=Os03g0726200;CGSNL Gene Symbol=ITPK3;CGSNL Gene Name=INOSITOL 1%2C3%2C4-TRISPHOSPHATE 5/6-KINASE 3;Oryzabase Gene Symbol Synonym(s)=OsITPK3%2C OsITP5/6K-3%2C ITP5/6K-3%2C OsIPK1;Oryzabase Gene Name Synonym(s)=inositol 1%2C 3%2C 4-trisphosphate 5/6-kinase 3%2C inositol polyphosphate kinase 1;Note=Similar to Hydroxyproline-rich glycoprotein DZ-HRGP precursor.;Transcript_evidence=AK067068 (DDBJ%2C Best hit);ORF_evidence=B4FHJ7 (UniProt);GO=Biological Process: inositol trisphosphate metabolic process (GO:0032957),Cellular Component: intracellular (GO:0005622),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: ATP binding (GO:0005524),Molecular Function: inositol tetrakisphosphate 1-kinase activity (GO:0047325),Molecular Function: inositol-1%2C3%2C4-trisphosphate 6-kinase activity (GO:0052725),Molecular Function: inositol-1%2C3%2C4-trisphosphate 5-kinase activity (GO:0052726);InterPro=Inositol-tetrakisphosphate 1-kinase (IPR008656),Inositol-tetrakisphosphate 1-kinase%2C plant (IPR017427);NIAS_FLcDNA=J013093C21;Oryzabase=11439;Expression=AK067068;TENOR=Os03t0726200-01;KEGG=Os03t0726200-01 (EC:2.7.1.134%2C EC:2.7.1.159)
Chr03	irgsp1_rep	five_prime_UTR	29535973	29536177	.	+	.	Parent=Os03t0726200-01
Chr03	irgsp1_rep	CDS	29536178	29536389	.	+	0	Parent=Os03t0726200-01
Chr03	irgsp1_rep	CDS	29538660	29538741	.	+	1	Parent=Os03t0726200-01
Chr03	irgsp1_rep	CDS	29538881	29538913	.	+	0	Parent=Os03t0726200-01
Chr03	irgsp1_rep	CDS	29539021	29539141	.	+	0	Parent=Os03t0726200-01
Chr03	irgsp1_rep	CDS	29539796	29539888	.	+	2	Parent=Os03t0726200-01
Chr03	irgsp1_rep	CDS	29540677	29540784	.	+	2	Parent=Os03t0726200-01
Chr03	irgsp1_rep	CDS	29540872	29541048	.	+	2	Parent=Os03t0726200-01
Chr03	irgsp1_rep	CDS	29541155	29541210	.	+	2	Parent=Os03t0726200-01
Chr03	irgsp1_rep	CDS	29541289	29541373	.	+	0	Parent=Os03t0726200-01
Chr03	irgsp1_rep	CDS	29541777	29541883	.	+	2	Parent=Os03t0726200-01
Chr03	irgsp1_rep	three_prime_UTR	29541884	29542114	.	+	.	Parent=Os03t0726200-01
Chr03	irgsp1_rep	mRNA	29541803	29543273	.	+	.	ID=Os03t0726200-02;Name=Os03t0726200-02;Locus_id=Os03g0726200;CGSNL Gene Symbol=ITPK3;CGSNL Gene Name=INOSITOL 1%2C3%2C4-TRISPHOSPHATE 5/6-KINASE 3;Oryzabase Gene Symbol Synonym(s)=OsITPK3%2C OsITP5/6K-3%2C ITP5/6K-3%2C OsIPK1;Oryzabase Gene Name Synonym(s)=inositol 1%2C 3%2C 4-trisphosphate 5/6-kinase 3%2C inositol polyphosphate kinase 1;Note=Hypothetical conserved gene.;Transcript_evidence=AK110903 (DDBJ%2C Best hit);ORF_evidence=B9FBA8 (UniProt);NIAS_FLcDNA=002-173-B04;Oryzabase=11439;Expression=AK110903;TENOR=Os03t0726200-02;KEGG=Os03t0726200-02
Chr03	irgsp1_rep	five_prime_UTR	29541803	29542102	.	+	.	Parent=Os03t0726200-02
Chr03	irgsp1_rep	CDS	29542103	29542753	.	+	0	Parent=Os03t0726200-02
Chr03	irgsp1_rep	three_prime_UTR	29542754	29543273	.	+	.	Parent=Os03t0726200-02
Chr03	irgsp1_rep	mRNA	29543831	29550120	.	-	.	ID=Os03t0726300-01;Name=Os03t0726300-01;Locus_id=Os03g0726300;CGSNL Gene Symbol=OSCA2.3;CGSNL Gene Name=HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 2.3;Oryzabase Gene Symbol Synonym(s)=OsOSCA2.3%2C OsIOSCA2.3%2C OsDDP4%2C DDP4%2C OsDDP4.1;Oryzabase Gene Name Synonym(s)=Hyperosmolality-gated calcium-permeable channel 2.3%2C DUF221 Domain containing Protein 4;Note=Protein of unknown function DUF221 domain containing protein.;Transcript_evidence=AK072268 (DDBJ%2C Best hit);ORF_evidence=Q681Q0 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Domain of unknown function DUF221 (IPR003864);NIAS_FLcDNA=J023003A21;Oryzabase=19656;Expression=AK072268;TENOR=Os03t0726300-01;KEGG=Os03t0726300-01
Chr03	irgsp1_rep	five_prime_UTR	29549904	29550120	.	-	.	Parent=Os03t0726300-01
Chr03	irgsp1_rep	five_prime_UTR	29548979	29549026	.	-	.	Parent=Os03t0726300-01
Chr03	irgsp1_rep	CDS	29548695	29548978	.	-	0	Parent=Os03t0726300-01
Chr03	irgsp1_rep	CDS	29548332	29548478	.	-	1	Parent=Os03t0726300-01
Chr03	irgsp1_rep	CDS	29547030	29547093	.	-	1	Parent=Os03t0726300-01
Chr03	irgsp1_rep	CDS	29546669	29546878	.	-	0	Parent=Os03t0726300-01
Chr03	irgsp1_rep	CDS	29546239	29546430	.	-	0	Parent=Os03t0726300-01
Chr03	irgsp1_rep	CDS	29545767	29546065	.	-	0	Parent=Os03t0726300-01
Chr03	irgsp1_rep	CDS	29545399	29545675	.	-	1	Parent=Os03t0726300-01
Chr03	irgsp1_rep	CDS	29544989	29545264	.	-	0	Parent=Os03t0726300-01
Chr03	irgsp1_rep	CDS	29544606	29544839	.	-	0	Parent=Os03t0726300-01
Chr03	irgsp1_rep	CDS	29544199	29544447	.	-	0	Parent=Os03t0726300-01
Chr03	irgsp1_rep	three_prime_UTR	29543831	29544198	.	-	.	Parent=Os03t0726300-01
Chr03	irgsp1_rep	mRNA	29544347	29548979	.	+	.	ID=Os03t0726350-00;Name=Os03t0726350-00;Locus_id=Os03g0726350;Note=Non-protein coding transcript.;Transcript_evidence=tplb0021b12 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os03t0726350-00
Chr03	irgsp1_rep	exon	29544347	29544467	.	+	.	Parent=Os03t0726350-00
Chr03	irgsp1_rep	exon	29544622	29544821	.	+	.	Parent=Os03t0726350-00
Chr03	irgsp1_rep	exon	29544973	29545272	.	+	.	Parent=Os03t0726350-00
Chr03	irgsp1_rep	exon	29545414	29545658	.	+	.	Parent=Os03t0726350-00
Chr03	irgsp1_rep	exon	29545752	29546067	.	+	.	Parent=Os03t0726350-00
Chr03	irgsp1_rep	exon	29546230	29546460	.	+	.	Parent=Os03t0726350-00
Chr03	irgsp1_rep	exon	29546718	29546829	.	+	.	Parent=Os03t0726350-00
Chr03	irgsp1_rep	exon	29548219	29548494	.	+	.	Parent=Os03t0726350-00
Chr03	irgsp1_rep	exon	29548709	29548979	.	+	.	Parent=Os03t0726350-00
Chr03	irgsp1_rep	mRNA	29556656	29559551	.	+	.	ID=Os03t0726400-01;Name=Os03t0726400-01;Locus_id=Os03g0726400;Note=Conserved hypothetical protein.;Transcript_evidence=AK068759 (DDBJ%2C Best hit);ORF_evidence=B8AR05 (UniProt);NIAS_FLcDNA=J013158A20;Expression=AK068759;TENOR=Os03t0726400-01;KEGG=Os03t0726400-01
Chr03	irgsp1_rep	five_prime_UTR	29556656	29557124	.	+	.	Parent=Os03t0726400-01
Chr03	irgsp1_rep	five_prime_UTR	29557961	29558041	.	+	.	Parent=Os03t0726400-01
Chr03	irgsp1_rep	CDS	29558042	29559274	.	+	0	Parent=Os03t0726400-01
Chr03	irgsp1_rep	three_prime_UTR	29559275	29559551	.	+	.	Parent=Os03t0726400-01
Chr03	irgsp1_rep	mRNA	29560551	29565846	.	-	.	ID=Os03t0726500-01;Name=Os03t0726500-01;Locus_id=Os03g0726500;Note=Protein of unknown function DUF81 domain containing protein.;Transcript_evidence=AK069807 (DDBJ%2C Best hit);ORF_evidence=A2XLL6 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Protein of unknown function DUF81 (IPR002781);NIAS_FLcDNA=J023028O14;Expression=AK069807;TENOR=Os03t0726500-01;KEGG=Os03t0726500-01
Chr03	irgsp1_rep	five_prime_UTR	29565701	29565846	.	-	.	Parent=Os03t0726500-01
Chr03	irgsp1_rep	CDS	29565512	29565700	.	-	0	Parent=Os03t0726500-01
Chr03	irgsp1_rep	CDS	29565261	29565420	.	-	0	Parent=Os03t0726500-01
Chr03	irgsp1_rep	CDS	29564969	29565169	.	-	2	Parent=Os03t0726500-01
Chr03	irgsp1_rep	CDS	29564787	29564848	.	-	2	Parent=Os03t0726500-01
Chr03	irgsp1_rep	CDS	29564611	29564665	.	-	0	Parent=Os03t0726500-01
Chr03	irgsp1_rep	CDS	29564407	29564474	.	-	2	Parent=Os03t0726500-01
Chr03	irgsp1_rep	CDS	29564068	29564154	.	-	0	Parent=Os03t0726500-01
Chr03	irgsp1_rep	CDS	29563656	29563706	.	-	0	Parent=Os03t0726500-01
Chr03	irgsp1_rep	CDS	29563149	29563388	.	-	0	Parent=Os03t0726500-01
Chr03	irgsp1_rep	CDS	29561593	29561686	.	-	0	Parent=Os03t0726500-01
Chr03	irgsp1_rep	CDS	29561367	29561507	.	-	2	Parent=Os03t0726500-01
Chr03	irgsp1_rep	CDS	29560996	29561075	.	-	2	Parent=Os03t0726500-01
Chr03	irgsp1_rep	three_prime_UTR	29560551	29560995	.	-	.	Parent=Os03t0726500-01
Chr03	irgsp1_rep	mRNA	29583117	29584833	.	-	.	ID=Os03t0726700-01;Name=Os03t0726700-01;Locus_id=Os03g0726700;RAP-DB Gene Symbol Synonym(s)=TAC3;RAP-DB Gene Name Synonym(s)=Tiller Angle Control 3;CGSNL Gene Symbol=TAC3;CGSNL Gene Name=TILLER ANGLE CONTROL 3;Oryzabase Gene Name Synonym(s)=Tiller Angle Control 3;Note=Control of tiller angle;Transcript_evidence=Inferred from literature;ORF_evidence=Q6ATZ4;Manual Curation=November 10%2C 2016;Literature_PMID=27814357;Oryzabase=21454;TENOR=Os03t0726700-00
Chr03	irgsp1_rep	CDS	29584758	29584833	.	-	0	Parent=Os03t0726700-01
Chr03	irgsp1_rep	CDS	29584597	29584640	.	-	2	Parent=Os03t0726700-01
Chr03	irgsp1_rep	CDS	29584379	29584498	.	-	0	Parent=Os03t0726700-01
Chr03	irgsp1_rep	CDS	29583375	29583428	.	-	0	Parent=Os03t0726700-01
Chr03	irgsp1_rep	CDS	29583117	29583281	.	-	0	Parent=Os03t0726700-01
Chr03	irgsp1_rep	mRNA	29585928	29591307	.	-	.	ID=Os03t0726800-01;Name=Os03t0726800-01;Locus_id=Os03g0726800;Note=Similar to serine esterase family protein.;Transcript_evidence=AK101683 (DDBJ%2C Best hit);ORF_evidence=NP_001148169.1 (RefSeq);InterPro=Domain of unknown function DUF676%2C lipase-like (IPR007751);NIAS_FLcDNA=J033058M21;TENOR=Os03t0726800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	29591088	29591307	.	-	.	Parent=Os03t0726800-01
Chr03	irgsp1_rep	CDS	29590894	29591087	.	-	0	Parent=Os03t0726800-01
Chr03	irgsp1_rep	CDS	29589738	29589805	.	-	1	Parent=Os03t0726800-01
Chr03	irgsp1_rep	CDS	29589484	29589554	.	-	2	Parent=Os03t0726800-01
Chr03	irgsp1_rep	CDS	29589041	29589301	.	-	0	Parent=Os03t0726800-01
Chr03	irgsp1_rep	CDS	29588449	29588609	.	-	0	Parent=Os03t0726800-01
Chr03	irgsp1_rep	CDS	29588276	29588331	.	-	1	Parent=Os03t0726800-01
Chr03	irgsp1_rep	CDS	29588073	29588125	.	-	2	Parent=Os03t0726800-01
Chr03	irgsp1_rep	CDS	29587874	29587997	.	-	0	Parent=Os03t0726800-01
Chr03	irgsp1_rep	CDS	29587119	29587216	.	-	2	Parent=Os03t0726800-01
Chr03	irgsp1_rep	CDS	29586264	29586335	.	-	0	Parent=Os03t0726800-01
Chr03	irgsp1_rep	three_prime_UTR	29585928	29586263	.	-	.	Parent=Os03t0726800-01
Chr03	irgsp1_rep	mRNA	29593072	29595799	.	-	.	ID=Os03t0726900-01;Name=Os03t0726900-01;Locus_id=Os03g0726900;Note=Similar to Ubiquitin ligase protein FANCL.;Transcript_evidence=AK100280 (DDBJ%2C Best hit);ORF_evidence=B6T4M8 (UniProt);InterPro=Fanconi anemia complex%2C subunit FancL%2C WD-repeat containing domain (IPR019162);NIAS_FLcDNA=J023074E23;Expression=AK100280;TENOR=Os03t0726900-01;KEGG=Os03t0726900-01 (EC:6.3.2.19)
Chr03	irgsp1_rep	five_prime_UTR	29595428	29595799	.	-	.	Parent=Os03t0726900-01
Chr03	irgsp1_rep	five_prime_UTR	29594655	29595328	.	-	.	Parent=Os03t0726900-01
Chr03	irgsp1_rep	CDS	29594562	29594654	.	-	0	Parent=Os03t0726900-01
Chr03	irgsp1_rep	CDS	29594316	29594430	.	-	0	Parent=Os03t0726900-01
Chr03	irgsp1_rep	CDS	29594173	29594230	.	-	2	Parent=Os03t0726900-01
Chr03	irgsp1_rep	CDS	29593950	29594103	.	-	1	Parent=Os03t0726900-01
Chr03	irgsp1_rep	three_prime_UTR	29593661	29593949	.	-	.	Parent=Os03t0726900-01
Chr03	irgsp1_rep	three_prime_UTR	29593445	29593568	.	-	.	Parent=Os03t0726900-01
Chr03	irgsp1_rep	three_prime_UTR	29593072	29593317	.	-	.	Parent=Os03t0726900-01
Chr03	irgsp1_rep	mRNA	29592966	29595787	.	-	.	ID=Os03t0726900-02;Name=Os03t0726900-02;Locus_id=Os03g0726900;Note=Similar to Ubiquitin ligase protein FANCL.;Transcript_evidence=AK072553 (DDBJ%2C Best hit);ORF_evidence=B6T4M8 (UniProt);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Fanconi anemia complex%2C subunit FancL%2C WD-repeat containing domain (IPR019162);NIAS_FLcDNA=J023125O07;TENOR=Os03t0726900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	29595749	29595787	.	-	.	Parent=Os03t0726900-02
Chr03	irgsp1_rep	CDS	29595428	29595748	.	-	0	Parent=Os03t0726900-02
Chr03	irgsp1_rep	CDS	29595252	29595328	.	-	0	Parent=Os03t0726900-02
Chr03	irgsp1_rep	CDS	29594736	29594814	.	-	1	Parent=Os03t0726900-02
Chr03	irgsp1_rep	CDS	29594562	29594636	.	-	0	Parent=Os03t0726900-02
Chr03	irgsp1_rep	CDS	29594316	29594430	.	-	0	Parent=Os03t0726900-02
Chr03	irgsp1_rep	CDS	29594173	29594230	.	-	2	Parent=Os03t0726900-02
Chr03	irgsp1_rep	CDS	29594032	29594103	.	-	1	Parent=Os03t0726900-02
Chr03	irgsp1_rep	CDS	29593661	29593794	.	-	1	Parent=Os03t0726900-02
Chr03	irgsp1_rep	CDS	29593445	29593568	.	-	2	Parent=Os03t0726900-02
Chr03	irgsp1_rep	CDS	29593245	29593317	.	-	1	Parent=Os03t0726900-02
Chr03	irgsp1_rep	three_prime_UTR	29592966	29593244	.	-	.	Parent=Os03t0726900-02
Chr03	irgsp1_rep	mRNA	29596367	29605885	.	-	.	ID=Os03t0727000-01;Name=Os03t0727000-01;Locus_id=Os03g0727000;CGSNL Gene Symbol=OSH1;CGSNL Gene Name=HOMEOBOX 1;Oryzabase Gene Symbol Synonym(s)=OSKN1%2C Oskn1%2C OsKN1%2C OSH1/Oskn1%2C HB75;Oryzabase Gene Name Synonym(s)=Oryza sativa homeobox1%2C Homeobox protein OSH1%2C Homeobox protein knotted-1-like 6%2C Homeobox protein knotted-1-like 1%2C Rice KNOX gene-1%2C KNOX PROTEIN 1%2C KNOX protein 1%2C KNOX protein 1%2C HOMEOBOX 1%2C HOMEOBOX PROTEIN OSH1;Note=Similar to Homeobox protein.;Transcript_evidence=AK107637 (DDBJ%2C Best hit);ORF_evidence=D6BV17 (UniProt);NIAS_FLcDNA=002-131-E10;Oryzabase=2974;TENOR=Os03t0727000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	29605798	29605885	.	-	.	Parent=Os03t0727000-01
Chr03	irgsp1_rep	CDS	29605613	29605797	.	-	0	Parent=Os03t0727000-01
Chr03	irgsp1_rep	CDS	29605419	29605436	.	-	1	Parent=Os03t0727000-01
Chr03	irgsp1_rep	CDS	29605159	29605280	.	-	1	Parent=Os03t0727000-01
Chr03	irgsp1_rep	CDS	29604929	29605073	.	-	2	Parent=Os03t0727000-01
Chr03	irgsp1_rep	CDS	29598239	29598248	.	-	1	Parent=Os03t0727000-01
Chr03	irgsp1_rep	three_prime_UTR	29598016	29598238	.	-	.	Parent=Os03t0727000-01
Chr03	irgsp1_rep	three_prime_UTR	29596367	29596937	.	-	.	Parent=Os03t0727000-01
Chr03	irgsp1_rep	mRNA	29596367	29606861	.	-	.	ID=Os03t0727000-02;Name=Os03t0727000-02;Locus_id=Os03g0727000;RAP-DB Gene Symbol Synonym(s)=OSH1%2C OSKN1%2C Oskn1%2C OsKN1%2C OSH1/Oskn1%2C HB75;RAP-DB Gene Name Synonym(s)=HOMEOBOX 1%2C Oryza sativa homeobox1%2C Homeobox protein OSH1%2C Homeobox protein knotted-1-like 6%2C Homeobox protein knotted-1-like 1%2C Rice KNOX gene-1%2C KNOX PROTEIN 1%2C KNOX protein 1%2C  HOMEOBOX PROTEIN OSH1;CGSNL Gene Symbol=OSH1;CGSNL Gene Name=HOMEOBOX 1;Oryzabase Gene Symbol Synonym(s)=OSKN1%2C Oskn1%2C OsKN1%2C OSH1/Oskn1%2C HB75;Oryzabase Gene Name Synonym(s)=Oryza sativa homeobox1%2C Homeobox protein OSH1%2C Homeobox protein knotted-1-like 6%2C Homeobox protein knotted-1-like 1%2C Rice KNOX gene-1%2C KNOX PROTEIN 1%2C KNOX protein 1%2C KNOX protein 1%2C HOMEOBOX 1%2C HOMEOBOX PROTEIN OSH1;Note=Knotted1-like homeobox protein%2C Shoot apical meristem maintenance%2C Embryogenesis;Transcript_evidence=Inferred from literature;ORF_evidence=P46609;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding (GO:0043565),Cellular Component: nucleus (GO:0005634);InterPro=KNOX1 (IPR005540),KNOX2 (IPR005541),ELK (IPR005539),Homeodomain-like (IPR009057),Homeobox domain (IPR001356),Homeobox KN domain (IPR008422),Homeobox%2C conserved site (IPR017970);Manual Curation=September 19%2C 2014;Literature_PMID=22207572,8104574,8755613;Oryzabase=2974
Chr03	irgsp1_rep	five_prime_UTR	29605798	29606861	.	-	.	Parent=Os03t0727000-02
Chr03	irgsp1_rep	CDS	29605419	29605797	.	-	0	Parent=Os03t0727000-02
Chr03	irgsp1_rep	CDS	29605159	29605280	.	-	2	Parent=Os03t0727000-02
Chr03	irgsp1_rep	CDS	29604929	29605073	.	-	0	Parent=Os03t0727000-02
Chr03	irgsp1_rep	CDS	29598016	29598248	.	-	2	Parent=Os03t0727000-02
Chr03	irgsp1_rep	CDS	29596731	29596937	.	-	0	Parent=Os03t0727000-02
Chr03	irgsp1_rep	three_prime_UTR	29596367	29596730	.	-	.	Parent=Os03t0727000-02
Chr03	irgsp1_rep	mRNA	29624227	29626728	.	+	.	ID=Os03t0727100-01;Name=Os03t0727100-01;Locus_id=Os03g0727100;Note=Conserved hypothetical protein.;Transcript_evidence=AK068587 (DDBJ%2C Best hit);ORF_evidence=A2XLM3 (UniProt);NIAS_FLcDNA=J013153F04;Expression=AK068587;TENOR=Os03t0727100-01;KEGG=Os03t0727100-01
Chr03	irgsp1_rep	five_prime_UTR	29624227	29624356	.	+	.	Parent=Os03t0727100-01
Chr03	irgsp1_rep	CDS	29624357	29624500	.	+	0	Parent=Os03t0727100-01
Chr03	irgsp1_rep	CDS	29624604	29624706	.	+	0	Parent=Os03t0727100-01
Chr03	irgsp1_rep	CDS	29624868	29624956	.	+	2	Parent=Os03t0727100-01
Chr03	irgsp1_rep	CDS	29625853	29625964	.	+	0	Parent=Os03t0727100-01
Chr03	irgsp1_rep	CDS	29626210	29626400	.	+	2	Parent=Os03t0727100-01
Chr03	irgsp1_rep	three_prime_UTR	29626401	29626728	.	+	.	Parent=Os03t0727100-01
Chr03	irgsp1_rep	mRNA	29624894	29626297	.	-	.	ID=Os03t0727150-00;Name=Os03t0727150-00;Locus_id=Os03g0727150;Note=Non-protein coding transcript.;Transcript_evidence=BT085291 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0727150-00
Chr03	irgsp1_rep	exon	29626203	29626297	.	-	.	Parent=Os03t0727150-00
Chr03	irgsp1_rep	exon	29625849	29625958	.	-	.	Parent=Os03t0727150-00
Chr03	irgsp1_rep	exon	29624894	29624951	.	-	.	Parent=Os03t0727150-00
Chr03	irgsp1_rep	mRNA	29626761	29632749	.	-	.	ID=Os03t0727200-00;Name=Os03t0727200-00;Locus_id=Os03g0727200;CGSNL Gene Symbol=OSH3;CGSNL Gene Name=HOMEOBOX 3;Oryzabase Gene Symbol Synonym(s)=OsH3%2C H3%2C HOS13;Oryzabase Gene Name Synonym(s)=Oryza sativa homeobox3%2C Homeobox protein knotted-1-like 7%2C Homeobox protein OSH3%2C Homeobox protein HOS13%2C Rice KNOX gene-3;Note=Similar to HOS13 protein (Fragment).;Transcript_evidence=AB028882 (DDBJ%2C Best hit);ORF_evidence=Q948L5-2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),ELK (IPR005539),KNOX1 (IPR005540),KNOX2 (IPR005541),Homeobox KN domain (IPR008422),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);Oryzabase=2976;Expression=AB028882;TENOR=Os03t0727200-00;KEGG=Os03t0727200-00
Chr03	irgsp1_rep	five_prime_UTR	29632290	29632749	.	-	.	Parent=Os03t0727200-00
Chr03	irgsp1_rep	CDS	29632004	29632289	.	-	0	Parent=Os03t0727200-00
Chr03	irgsp1_rep	CDS	29631587	29631705	.	-	2	Parent=Os03t0727200-00
Chr03	irgsp1_rep	CDS	29631539	29631550	.	-	0	Parent=Os03t0727200-00
Chr03	irgsp1_rep	CDS	29631220	29631358	.	-	0	Parent=Os03t0727200-00
Chr03	irgsp1_rep	CDS	29626916	29627457	.	-	2	Parent=Os03t0727200-00
Chr03	irgsp1_rep	three_prime_UTR	29626761	29626915	.	-	.	Parent=Os03t0727200-00
Chr03	irgsp1_rep	mRNA	29660662	29662922	.	-	.	ID=Os03t0727600-01;Name=Os03t0727600-01;Locus_id=Os03g0727600;RAP-DB Gene Symbol Synonym(s)=ACS1%2C ACC1*%2C OsACS1%2C Os-ACS1%2C ACC1;RAP-DB Gene Name Synonym(s)=ACC SYNTHASE 1%2C 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1%2C ACC synthase 1%2C 1-aminocyclopropane-1-carboxylate synthase 1%2C ACC synthase-1%2C S-adenosyl-L-methionine methylthioadenosine-lyase 1;CGSNL Gene Symbol=ACS1;CGSNL Gene Name=ACC SYNTHASE 1;Oryzabase Gene Symbol Synonym(s)=ACC1*%2C OsACS1%2C Os-ACS1%2C ACC1;Oryzabase Gene Name Synonym(s)=1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1%2C ACC synthase 1%2C 1-aminocyclopropane-1-carboxylate synthase 1%2C ACC synthase-1%2C S-adenosyl-L-methionine methylthioadenosine-lyase 1%2C 1-aminocyclopropane-1-carboxylic acid synthase 1;Note=ACC synthase%2C Ethylene biosynthesis;Transcript_evidence=AK071011;ORF_evidence=Q10DK7,B7EIR0;GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent transferase (IPR015424),Aminotransferase%2C class I/classII (IPR004839),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Aminotransferases%2C class-I%2C pyridoxal-phosphate-binding site (IPR004838);NIAS_FLcDNA=J023080J16;Manual Curation=November 17%2C 2009;Literature_PMID=17012402;Oryzabase=518;Expression=AK071011;TENOR=Os03t0727600-01;KEGG=Os03t0727600-01 (EC:4.4.1.14)
Chr03	irgsp1_rep	five_prime_UTR	29662762	29662922	.	-	.	Parent=Os03t0727600-01
Chr03	irgsp1_rep	CDS	29662585	29662761	.	-	0	Parent=Os03t0727600-01
Chr03	irgsp1_rep	CDS	29662352	29662489	.	-	0	Parent=Os03t0727600-01
Chr03	irgsp1_rep	CDS	29662093	29662253	.	-	0	Parent=Os03t0727600-01
Chr03	irgsp1_rep	CDS	29661007	29661994	.	-	1	Parent=Os03t0727600-01
Chr03	irgsp1_rep	three_prime_UTR	29660662	29661006	.	-	.	Parent=Os03t0727600-01
Chr03	irgsp1_rep	mRNA	29685433	29686996	.	+	.	ID=Os03t0727800-01;Name=Os03t0727800-01;Locus_id=Os03g0727800;Oryzabase Gene Symbol Synonym(s)=OsFbox172%2C Os_F0303;Oryzabase Gene Name Synonym(s)=F-box protein 172;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK109453 (DDBJ%2C Best hit);ORF_evidence=B8B9G6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=001-118-E11;Oryzabase=16961;Expression=AK109453;TENOR=Os03t0727800-01;KEGG=Os03t0727800-01
Chr03	irgsp1_rep	five_prime_UTR	29685433	29685498	.	+	.	Parent=Os03t0727800-01
Chr03	irgsp1_rep	CDS	29685499	29686830	.	+	0	Parent=Os03t0727800-01
Chr03	irgsp1_rep	three_prime_UTR	29686831	29686996	.	+	.	Parent=Os03t0727800-01
Chr03	irgsp1_rep	mRNA	29705032	29721934	.	-	.	ID=Os03t0727900-01;Name=Os03t0727900-01;Locus_id=Os03g0727900;Note=GTP1/OBG domain containing protein.;Transcript_evidence=AK105262 (DDBJ%2C Best hit);ORF_evidence=NP_001154669.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=GTP-binding domain%2C HSR1-related (IPR002917),GTP1/OBG (IPR006073),GTP-binding protein%2C HflX (IPR016496);NIAS_FLcDNA=001-115-B11;Expression=AK105262;TENOR=Os03t0727900-01;KEGG=Os03t0727900-01
Chr03	irgsp1_rep	five_prime_UTR	29721886	29721934	.	-	.	Parent=Os03t0727900-01
Chr03	irgsp1_rep	CDS	29721789	29721885	.	-	0	Parent=Os03t0727900-01
Chr03	irgsp1_rep	CDS	29721474	29721686	.	-	2	Parent=Os03t0727900-01
Chr03	irgsp1_rep	CDS	29720330	29720394	.	-	2	Parent=Os03t0727900-01
Chr03	irgsp1_rep	CDS	29720041	29720104	.	-	0	Parent=Os03t0727900-01
Chr03	irgsp1_rep	CDS	29719837	29719925	.	-	2	Parent=Os03t0727900-01
Chr03	irgsp1_rep	CDS	29719573	29719685	.	-	0	Parent=Os03t0727900-01
Chr03	irgsp1_rep	CDS	29718565	29718633	.	-	1	Parent=Os03t0727900-01
Chr03	irgsp1_rep	CDS	29718330	29718474	.	-	1	Parent=Os03t0727900-01
Chr03	irgsp1_rep	CDS	29718146	29718201	.	-	0	Parent=Os03t0727900-01
Chr03	irgsp1_rep	CDS	29718013	29718063	.	-	1	Parent=Os03t0727900-01
Chr03	irgsp1_rep	CDS	29717853	29717907	.	-	1	Parent=Os03t0727900-01
Chr03	irgsp1_rep	CDS	29717174	29717230	.	-	0	Parent=Os03t0727900-01
Chr03	irgsp1_rep	CDS	29706785	29706904	.	-	0	Parent=Os03t0727900-01
Chr03	irgsp1_rep	CDS	29706168	29706680	.	-	0	Parent=Os03t0727900-01
Chr03	irgsp1_rep	three_prime_UTR	29705032	29705538	.	-	.	Parent=Os03t0727900-01
Chr03	irgsp1_rep	mRNA	29724283	29729899	.	+	.	ID=Os03t0728100-01;Name=Os03t0728100-01;Locus_id=Os03g0728100;Oryzabase Gene Symbol Synonym(s)=OsDjC32;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C32;Note=Heat shock protein DnaJ%2C N-terminal domain containing protein.;Transcript_evidence=AK068717 (DDBJ%2C Best hit);ORF_evidence=NP_001151644.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095);NIAS_FLcDNA=J013163H12;Oryzabase=12189;Expression=AK068717;TENOR=Os03t0728100-01;KEGG=Os03t0728100-01
Chr03	irgsp1_rep	five_prime_UTR	29724283	29724700	.	+	.	Parent=Os03t0728100-01
Chr03	irgsp1_rep	CDS	29724701	29724832	.	+	0	Parent=Os03t0728100-01
Chr03	irgsp1_rep	CDS	29725587	29725628	.	+	0	Parent=Os03t0728100-01
Chr03	irgsp1_rep	CDS	29726627	29726758	.	+	0	Parent=Os03t0728100-01
Chr03	irgsp1_rep	CDS	29727050	29727285	.	+	0	Parent=Os03t0728100-01
Chr03	irgsp1_rep	CDS	29728464	29728500	.	+	1	Parent=Os03t0728100-01
Chr03	irgsp1_rep	CDS	29729270	29729327	.	+	0	Parent=Os03t0728100-01
Chr03	irgsp1_rep	CDS	29729427	29729506	.	+	2	Parent=Os03t0728100-01
Chr03	irgsp1_rep	three_prime_UTR	29729507	29729899	.	+	.	Parent=Os03t0728100-01
Chr03	irgsp1_rep	mRNA	29724319	29729842	.	+	.	ID=Os03t0728100-02;Name=Os03t0728100-02;Locus_id=Os03g0728100;Oryzabase Gene Symbol Synonym(s)=OsDjC32;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C32;Note=Heat shock protein DnaJ%2C N-terminal domain containing protein.;Transcript_evidence=AK099970 (DDBJ%2C Best hit);ORF_evidence=NP_001151644.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095);NIAS_FLcDNA=J013127L17;Oryzabase=12189;Expression=AK099970;TENOR=Os03t0728100-02;KEGG=Os03t0728100-02
Chr03	irgsp1_rep	five_prime_UTR	29724319	29724700	.	+	.	Parent=Os03t0728100-02
Chr03	irgsp1_rep	CDS	29724701	29724832	.	+	0	Parent=Os03t0728100-02
Chr03	irgsp1_rep	CDS	29725587	29725628	.	+	0	Parent=Os03t0728100-02
Chr03	irgsp1_rep	CDS	29726627	29726758	.	+	0	Parent=Os03t0728100-02
Chr03	irgsp1_rep	CDS	29727050	29727285	.	+	0	Parent=Os03t0728100-02
Chr03	irgsp1_rep	CDS	29728464	29728500	.	+	1	Parent=Os03t0728100-02
Chr03	irgsp1_rep	CDS	29729270	29729327	.	+	0	Parent=Os03t0728100-02
Chr03	irgsp1_rep	CDS	29729427	29729506	.	+	2	Parent=Os03t0728100-02
Chr03	irgsp1_rep	three_prime_UTR	29729507	29729842	.	+	.	Parent=Os03t0728100-02
Chr03	irgsp1_rep	mRNA	29730344	29732399	.	+	.	ID=Os03t0728200-01;Name=Os03t0728200-01;Locus_id=Os03g0728200;RAP-DB Gene Symbol Synonym(s)=OsNPPR3%2C FLO14;RAP-DB Gene Name Synonym(s)=floury endosperm14;CGSNL Gene Symbol=FLO14;CGSNL Gene Name=FLOURY ENDOSPERM 14;Oryzabase Gene Symbol Synonym(s)=OsFLO14%2C OsNPPR3%2C NPPR3;Oryzabase Gene Name Synonym(s)=floury endosperm14%2C Nucleolus-Localized Pentatricopeptide Repeat Protein 3;Note=Nucleolus-localized P-family pentatricopeptide repeat (PPR) protein%2C Regulation of expression levels and splicing of mitochondrial genome-encoded genes%2C Starch biosynthesis and seed vigor;Transcript_evidence=Inferred from literature;ORF_evidence=Q6ATJ2;GO=Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical domain superfamily (IPR011990),Pentatricopeptide repeat (IPR002885);Manual Curation=January 6%2C 2020;Literature_PMID=31889223;Oryzabase=23444;TENOR=Os03t0728200-00;KEGG=Os03t0728200-00;Subcellular location=nucleus (GO:0005634), nucleolus (GO:0005730)
Chr03	irgsp1_rep	CDS	29730344	29732149	.	+	0	Parent=Os03t0728200-01
Chr03	irgsp1_rep	three_prime_UTR	29732150	29732399	.	+	.	Parent=Os03t0728200-01
Chr03	irgsp1_rep	mRNA	29741931	29745253	.	+	.	ID=Os03t0728500-01;Name=Os03t0728500-01;Locus_id=Os03g0728500;Note=Forkhead-associated domain containing protein.;Transcript_evidence=AK101820 (DDBJ%2C Best hit);ORF_evidence=NP_001147531.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Forkhead-associated (FHA) domain (IPR000253),SMAD/FHA domain (IPR008984);NIAS_FLcDNA=J033067E18;Expression=AK101820;TENOR=Os03t0728500-01;KEGG=Os03t0728500-01
Chr03	irgsp1_rep	five_prime_UTR	29741931	29741995	.	+	.	Parent=Os03t0728500-01
Chr03	irgsp1_rep	CDS	29741996	29743414	.	+	0	Parent=Os03t0728500-01
Chr03	irgsp1_rep	three_prime_UTR	29743415	29743425	.	+	.	Parent=Os03t0728500-01
Chr03	irgsp1_rep	three_prime_UTR	29744842	29745253	.	+	.	Parent=Os03t0728500-01
Chr03	irgsp1_rep	mRNA	29745719	29747861	.	-	.	ID=Os03t0728600-01;Name=Os03t0728600-01;Locus_id=Os03g0728600;Note=Conserved hypothetical protein.;Transcript_evidence=AK107116 (DDBJ%2C Best hit);ORF_evidence=A3AMB4 (UniProt);NIAS_FLcDNA=002-124-A11;TENOR=Os03t0728600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	29747803	29747861	.	-	.	Parent=Os03t0728600-01
Chr03	irgsp1_rep	CDS	29747494	29747802	.	-	0	Parent=Os03t0728600-01
Chr03	irgsp1_rep	three_prime_UTR	29747053	29747493	.	-	.	Parent=Os03t0728600-01
Chr03	irgsp1_rep	three_prime_UTR	29746875	29746961	.	-	.	Parent=Os03t0728600-01
Chr03	irgsp1_rep	three_prime_UTR	29745719	29746091	.	-	.	Parent=Os03t0728600-01
Chr03	irgsp1_rep	mRNA	29766132	29774052	.	+	.	ID=Os03t0728800-01;Name=Os03t0728800-01;Locus_id=Os03g0728800;Oryzabase Gene Symbol Synonym(s)=OsRH16;Oryzabase Gene Name Synonym(s)=RNA helicase 16;Note=Similar to RNA helicase (Fragment).;Transcript_evidence=AK068068 (DDBJ%2C Best hit);ORF_evidence=Q9SW44 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=J013129E17;Oryzabase=19133;Expression=AK068068;TENOR=Os03t0728800-01;KEGG=Os03t0728800-01
Chr03	irgsp1_rep	five_prime_UTR	29766132	29766170	.	+	.	Parent=Os03t0728800-01
Chr03	irgsp1_rep	CDS	29766171	29766551	.	+	0	Parent=Os03t0728800-01
Chr03	irgsp1_rep	CDS	29767021	29767185	.	+	0	Parent=Os03t0728800-01
Chr03	irgsp1_rep	CDS	29767459	29767548	.	+	0	Parent=Os03t0728800-01
Chr03	irgsp1_rep	CDS	29767650	29767778	.	+	0	Parent=Os03t0728800-01
Chr03	irgsp1_rep	CDS	29768209	29768309	.	+	0	Parent=Os03t0728800-01
Chr03	irgsp1_rep	CDS	29768667	29768780	.	+	1	Parent=Os03t0728800-01
Chr03	irgsp1_rep	CDS	29769027	29769159	.	+	1	Parent=Os03t0728800-01
Chr03	irgsp1_rep	CDS	29769791	29769856	.	+	0	Parent=Os03t0728800-01
Chr03	irgsp1_rep	CDS	29770213	29770392	.	+	0	Parent=Os03t0728800-01
Chr03	irgsp1_rep	CDS	29770631	29770726	.	+	0	Parent=Os03t0728800-01
Chr03	irgsp1_rep	CDS	29770846	29770983	.	+	0	Parent=Os03t0728800-01
Chr03	irgsp1_rep	CDS	29771947	29772029	.	+	0	Parent=Os03t0728800-01
Chr03	irgsp1_rep	CDS	29772334	29772371	.	+	1	Parent=Os03t0728800-01
Chr03	irgsp1_rep	CDS	29772455	29772675	.	+	2	Parent=Os03t0728800-01
Chr03	irgsp1_rep	CDS	29773799	29773876	.	+	0	Parent=Os03t0728800-01
Chr03	irgsp1_rep	three_prime_UTR	29773877	29774052	.	+	.	Parent=Os03t0728800-01
Chr03	irgsp1_rep	mRNA	29770667	29774115	.	+	.	ID=Os03t0728800-02;Name=Os03t0728800-02;Locus_id=Os03g0728800;Oryzabase Gene Symbol Synonym(s)=OsRH16;Oryzabase Gene Name Synonym(s)=RNA helicase 16;Note=Similar to cDNA clone:J013129E17%2C full insert sequence.;Transcript_evidence=AK121524 (DDBJ%2C Best hit);ORF_evidence=B7EEE3 (UniProt);NIAS_FLcDNA=J033029D07;Oryzabase=19133;Expression=AK121524;TENOR=Os03t0728800-02;KEGG=Os03t0728800-02
Chr03	irgsp1_rep	CDS	29770667	29770726	.	+	0	Parent=Os03t0728800-02
Chr03	irgsp1_rep	CDS	29770846	29770983	.	+	0	Parent=Os03t0728800-02
Chr03	irgsp1_rep	CDS	29771947	29772029	.	+	0	Parent=Os03t0728800-02
Chr03	irgsp1_rep	CDS	29772334	29772371	.	+	1	Parent=Os03t0728800-02
Chr03	irgsp1_rep	CDS	29772455	29772675	.	+	2	Parent=Os03t0728800-02
Chr03	irgsp1_rep	CDS	29773799	29773876	.	+	0	Parent=Os03t0728800-02
Chr03	irgsp1_rep	three_prime_UTR	29773877	29774115	.	+	.	Parent=Os03t0728800-02
Chr03	irgsp1_rep	mRNA	29774858	29778471	.	-	.	ID=Os03t0728900-00;Name=Os03t0728900-00;Locus_id=Os03g0728900;Oryzabase Gene Symbol Synonym(s)=OsbHLH084;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 084;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=AK334214 (DDBJ);ORF_evidence=NP_001051150.1 (RefSeq);InterPro=Helix-loop-helix DNA-binding (IPR011598);Oryzabase=15371;TENOR=Os03t0728900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	29778103	29778471	.	-	.	Parent=Os03t0728900-00
Chr03	irgsp1_rep	five_prime_UTR	29776770	29776948	.	-	.	Parent=Os03t0728900-00
Chr03	irgsp1_rep	five_prime_UTR	29776602	29776610	.	-	.	Parent=Os03t0728900-00
Chr03	irgsp1_rep	CDS	29776476	29776601	.	-	0	Parent=Os03t0728900-00
Chr03	irgsp1_rep	CDS	29776179	29776370	.	-	0	Parent=Os03t0728900-00
Chr03	irgsp1_rep	CDS	29776016	29776081	.	-	0	Parent=Os03t0728900-00
Chr03	irgsp1_rep	CDS	29775870	29775938	.	-	0	Parent=Os03t0728900-00
Chr03	irgsp1_rep	CDS	29775718	29775789	.	-	0	Parent=Os03t0728900-00
Chr03	irgsp1_rep	CDS	29775465	29775638	.	-	0	Parent=Os03t0728900-00
Chr03	irgsp1_rep	CDS	29775287	29775377	.	-	0	Parent=Os03t0728900-00
Chr03	irgsp1_rep	CDS	29775173	29775195	.	-	2	Parent=Os03t0728900-00
Chr03	irgsp1_rep	three_prime_UTR	29774858	29775172	.	-	.	Parent=Os03t0728900-00
Chr03	irgsp1_rep	mRNA	29784695	29787012	.	-	.	ID=Os03t0729000-01;Name=Os03t0729000-01;Locus_id=Os03g0729000;Oryzabase Gene Name Synonym(s)=M50 family peptidase;Note=Similar to Peptidase%2C M50 family.;Transcript_evidence=AK108046 (DDBJ%2C Best hit);ORF_evidence=B6UET0 (UniProt);NIAS_FLcDNA=002-137-E10;Oryzabase=21955;Expression=AK108046;TENOR=Os03t0729000-01;KEGG=Os03t0729000-01
Chr03	irgsp1_rep	five_prime_UTR	29786944	29787012	.	-	.	Parent=Os03t0729000-01
Chr03	irgsp1_rep	CDS	29786359	29786943	.	-	0	Parent=Os03t0729000-01
Chr03	irgsp1_rep	CDS	29786050	29786247	.	-	0	Parent=Os03t0729000-01
Chr03	irgsp1_rep	CDS	29785684	29785908	.	-	0	Parent=Os03t0729000-01
Chr03	irgsp1_rep	CDS	29784846	29785598	.	-	0	Parent=Os03t0729000-01
Chr03	irgsp1_rep	three_prime_UTR	29784695	29784845	.	-	.	Parent=Os03t0729000-01
Chr03	irgsp1_rep	mRNA	29788494	29791241	.	-	.	ID=Os03t0729100-01;Name=Os03t0729100-01;Locus_id=Os03g0729100;Note=Protein of unknown function DUF3054 domain containing protein.;Transcript_evidence=AK107548 (DDBJ%2C Best hit);ORF_evidence=B9FBB9 (UniProt);InterPro=Protein of unknown function DUF3054 (IPR021414);NIAS_FLcDNA=002-130-A06;TENOR=Os03t0729100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	29791096	29791241	.	-	.	Parent=Os03t0729100-01
Chr03	irgsp1_rep	CDS	29791055	29791095	.	-	0	Parent=Os03t0729100-01
Chr03	irgsp1_rep	CDS	29790762	29790902	.	-	1	Parent=Os03t0729100-01
Chr03	irgsp1_rep	CDS	29790542	29790669	.	-	1	Parent=Os03t0729100-01
Chr03	irgsp1_rep	CDS	29790348	29790460	.	-	2	Parent=Os03t0729100-01
Chr03	irgsp1_rep	CDS	29789419	29789655	.	-	0	Parent=Os03t0729100-01
Chr03	irgsp1_rep	three_prime_UTR	29788494	29789418	.	-	.	Parent=Os03t0729100-01
Chr03	irgsp1_rep	mRNA	29794785	29797800	.	-	.	ID=Os03t0729200-01;Name=Os03t0729200-01;Locus_id=Os03g0729200;Note=Similar to predicted protein.;Transcript_evidence=AK067045 (DDBJ%2C Best hit);ORF_evidence=A2XLM8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: antioxidant activity (GO:0016209),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant (IPR000866),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=J013091E23;Expression=AK067045;TENOR=Os03t0729200-01;KEGG=Os03t0729200-01
Chr03	irgsp1_rep	five_prime_UTR	29797710	29797800	.	-	.	Parent=Os03t0729200-01
Chr03	irgsp1_rep	CDS	29797416	29797709	.	-	0	Parent=Os03t0729200-01
Chr03	irgsp1_rep	CDS	29797087	29797133	.	-	0	Parent=Os03t0729200-01
Chr03	irgsp1_rep	CDS	29796843	29796957	.	-	1	Parent=Os03t0729200-01
Chr03	irgsp1_rep	CDS	29796461	29796505	.	-	0	Parent=Os03t0729200-01
Chr03	irgsp1_rep	CDS	29795744	29795803	.	-	0	Parent=Os03t0729200-01
Chr03	irgsp1_rep	CDS	29795646	29795663	.	-	0	Parent=Os03t0729200-01
Chr03	irgsp1_rep	three_prime_UTR	29795573	29795645	.	-	.	Parent=Os03t0729200-01
Chr03	irgsp1_rep	three_prime_UTR	29795309	29795468	.	-	.	Parent=Os03t0729200-01
Chr03	irgsp1_rep	three_prime_UTR	29794785	29795027	.	-	.	Parent=Os03t0729200-01
Chr03	irgsp1_rep	mRNA	29794749	29797796	.	-	.	ID=Os03t0729200-02;Name=Os03t0729200-02;Locus_id=Os03g0729200;Note=Thioredoxin-like fold domain containing protein.;Transcript_evidence=AK099420 (DDBJ%2C Best hit);ORF_evidence=A2XLM8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: antioxidant activity (GO:0016209),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant (IPR000866),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=J013007B16;Expression=AK099420;TENOR=Os03t0729200-02;KEGG=Os03t0729200-02
Chr03	irgsp1_rep	five_prime_UTR	29797710	29797796	.	-	.	Parent=Os03t0729200-02
Chr03	irgsp1_rep	CDS	29797416	29797709	.	-	0	Parent=Os03t0729200-02
Chr03	irgsp1_rep	CDS	29797087	29797133	.	-	0	Parent=Os03t0729200-02
Chr03	irgsp1_rep	CDS	29796843	29796957	.	-	1	Parent=Os03t0729200-02
Chr03	irgsp1_rep	CDS	29796461	29796505	.	-	0	Parent=Os03t0729200-02
Chr03	irgsp1_rep	CDS	29795744	29795803	.	-	0	Parent=Os03t0729200-02
Chr03	irgsp1_rep	CDS	29795573	29795668	.	-	0	Parent=Os03t0729200-02
Chr03	irgsp1_rep	CDS	29795349	29795468	.	-	0	Parent=Os03t0729200-02
Chr03	irgsp1_rep	three_prime_UTR	29795309	29795348	.	-	.	Parent=Os03t0729200-02
Chr03	irgsp1_rep	three_prime_UTR	29794749	29795027	.	-	.	Parent=Os03t0729200-02
Chr03	irgsp1_rep	mRNA	29794747	29796910	.	-	.	ID=Os03t0729200-03;Name=Os03t0729200-03;Locus_id=Os03g0729200;Note=Similar to predicted protein.;Transcript_evidence=AK059020 (DDBJ%2C Best hit);ORF_evidence=A2XLM8 (UniProt);NIAS_FLcDNA=001-021-B03;Expression=AK059020;TENOR=Os03t0729200-03;KEGG=Os03t0729200-03
Chr03	irgsp1_rep	five_prime_UTR	29796909	29796910	.	-	.	Parent=Os03t0729200-03
Chr03	irgsp1_rep	CDS	29796843	29796908	.	-	0	Parent=Os03t0729200-03
Chr03	irgsp1_rep	CDS	29796461	29796505	.	-	0	Parent=Os03t0729200-03
Chr03	irgsp1_rep	CDS	29795744	29795803	.	-	0	Parent=Os03t0729200-03
Chr03	irgsp1_rep	CDS	29795573	29795668	.	-	0	Parent=Os03t0729200-03
Chr03	irgsp1_rep	CDS	29795349	29795468	.	-	0	Parent=Os03t0729200-03
Chr03	irgsp1_rep	three_prime_UTR	29795309	29795348	.	-	.	Parent=Os03t0729200-03
Chr03	irgsp1_rep	three_prime_UTR	29794747	29795027	.	-	.	Parent=Os03t0729200-03
Chr03	irgsp1_rep	mRNA	29798706	29800489	.	-	.	ID=Os03t0729300-01;Name=Os03t0729300-01;Locus_id=Os03g0729300;Note=Thioredoxin-like fold domain containing protein.;Transcript_evidence=AK108483 (DDBJ%2C Best hit);ORF_evidence=B9FBC1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: antioxidant activity (GO:0016209),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant (IPR000866),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=002-143-F06;Expression=AK108483;TENOR=Os03t0729300-01;KEGG=Os03t0729300-01
Chr03	irgsp1_rep	five_prime_UTR	29800485	29800489	.	-	.	Parent=Os03t0729300-01
Chr03	irgsp1_rep	CDS	29800179	29800484	.	-	0	Parent=Os03t0729300-01
Chr03	irgsp1_rep	CDS	29800034	29800080	.	-	0	Parent=Os03t0729300-01
Chr03	irgsp1_rep	CDS	29799808	29799922	.	-	1	Parent=Os03t0729300-01
Chr03	irgsp1_rep	CDS	29799473	29799517	.	-	0	Parent=Os03t0729300-01
Chr03	irgsp1_rep	CDS	29799332	29799385	.	-	0	Parent=Os03t0729300-01
Chr03	irgsp1_rep	CDS	29799121	29799216	.	-	0	Parent=Os03t0729300-01
Chr03	irgsp1_rep	CDS	29798880	29798996	.	-	0	Parent=Os03t0729300-01
Chr03	irgsp1_rep	three_prime_UTR	29798706	29798879	.	-	.	Parent=Os03t0729300-01
Chr03	irgsp1_rep	mRNA	29813811	29814413	.	+	.	ID=Os03t0729400-01;Name=Os03t0729400-01;Locus_id=Os03g0729400;Note=Non-protein coding transcript.;Transcript_evidence=AK110701 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-170-B12;TENOR=Os03t0729400-01
Chr03	irgsp1_rep	exon	29813811	29814413	.	+	.	Parent=Os03t0729400-01
Chr03	irgsp1_rep	mRNA	29823449	29825816	.	+	.	ID=Os03t0729500-01;Name=Os03t0729500-01;Locus_id=Os03g0729500;RAP-DB Gene Symbol Synonym(s)=GRF6%2C OsGRF6;RAP-DB Gene Name Synonym(s)=GROWTH-REGULATING FACTOR 6%2C growth-regulating factor6;CGSNL Gene Symbol=GRF6;CGSNL Gene Name=GROWTH-REGULATING FACTOR 6;Oryzabase Gene Symbol Synonym(s)=OsGRF6;Oryzabase Gene Name Synonym(s)=growth-regulating factor6%2C GROWTH REGULATING FACTOR 6;Note=Transcription factor%2C Floral organ development;Transcript_evidence=AK073578;ORF_evidence=Inferred from literature;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides (GO:0016818),Cellular Component: nucleus (GO:0005634);InterPro=Glutamine-Leucine-Glutamine%2C QLQ (IPR014978),WRC (IPR014977);NIAS_FLcDNA=J033048N01;Manual Curation=June 16%2C 2014;Literature_PMID=24596329,15295073;Oryzabase=10280;TENOR=Os03t0729500-01;KEGG=Os03t0729500-01
Chr03	irgsp1_rep	five_prime_UTR	29823449	29823531	.	+	.	Parent=Os03t0729500-01
Chr03	irgsp1_rep	CDS	29823532	29823715	.	+	0	Parent=Os03t0729500-01
Chr03	irgsp1_rep	CDS	29823862	29824225	.	+	2	Parent=Os03t0729500-01
Chr03	irgsp1_rep	CDS	29824639	29825461	.	+	1	Parent=Os03t0729500-01
Chr03	irgsp1_rep	three_prime_UTR	29825462	29825816	.	+	.	Parent=Os03t0729500-01
Chr03	irgsp1_rep	mRNA	29827496	29828494	.	+	.	ID=Os03t0729600-01;Name=Os03t0729600-01;Locus_id=Os03g0729600;Note=Conserved hypothetical protein.;Transcript_evidence=AK063169 (DDBJ%2C Best hit),AK062697 (DDBJ%2C Best hit);ORF_evidence=B9FBC3 (UniProt);NIAS_FLcDNA=001-110-B11,001-106-A10;Expression=AK063169;TENOR=Os03t0729600-01;KEGG=Os03t0729600-01
Chr03	irgsp1_rep	five_prime_UTR	29827496	29827549	.	+	.	Parent=Os03t0729600-01
Chr03	irgsp1_rep	CDS	29827550	29828254	.	+	0	Parent=Os03t0729600-01
Chr03	irgsp1_rep	three_prime_UTR	29828255	29828494	.	+	.	Parent=Os03t0729600-01
Chr03	irgsp1_rep	mRNA	29828701	29831513	.	+	.	ID=Os03t0729700-01;Name=Os03t0729700-01;Locus_id=Os03g0729700;Note=Ribosomal RNA small subunit methyltransferase E domain containing protein.;Transcript_evidence=AK067533 (DDBJ%2C Best hit);ORF_evidence=NP_175422.2 (RefSeq);GO=Biological Process: rRNA processing (GO:0006364),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Ribosomal RNA small subunit methyltransferase E (IPR006700),PUA-like domain (IPR015947);NIAS_FLcDNA=J013108O10;Expression=AK067533;TENOR=Os03t0729700-01;KEGG=Os03t0729700-01 (EC:2.1.1.-)
Chr03	irgsp1_rep	five_prime_UTR	29828701	29828702	.	+	.	Parent=Os03t0729700-01
Chr03	irgsp1_rep	CDS	29828703	29828881	.	+	0	Parent=Os03t0729700-01
Chr03	irgsp1_rep	CDS	29828928	29829028	.	+	1	Parent=Os03t0729700-01
Chr03	irgsp1_rep	CDS	29829364	29829439	.	+	2	Parent=Os03t0729700-01
Chr03	irgsp1_rep	CDS	29829709	29829851	.	+	1	Parent=Os03t0729700-01
Chr03	irgsp1_rep	CDS	29829939	29829985	.	+	2	Parent=Os03t0729700-01
Chr03	irgsp1_rep	CDS	29830064	29830172	.	+	0	Parent=Os03t0729700-01
Chr03	irgsp1_rep	CDS	29830252	29830313	.	+	2	Parent=Os03t0729700-01
Chr03	irgsp1_rep	CDS	29830679	29830793	.	+	0	Parent=Os03t0729700-01
Chr03	irgsp1_rep	CDS	29831263	29831423	.	+	2	Parent=Os03t0729700-01
Chr03	irgsp1_rep	three_prime_UTR	29831424	29831513	.	+	.	Parent=Os03t0729700-01
Chr03	irgsp1_rep	mRNA	29836227	29838397	.	+	.	ID=Os03t0729800-00;Name=Os03t0729800-00;Locus_id=Os03g0729800;Oryzabase Gene Symbol Synonym(s)=OsSTA113;Note=Hypothetical conserved gene.;Transcript_evidence=EU975419 (DDBJ);ORF_evidence=NP_001051158.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: amino acid binding (GO:0016597);InterPro=Amino acid-binding ACT (IPR002912);Oryzabase=19404;TENOR=Os03t0729800-00;KEGG=Os03t0729800-00
Chr03	irgsp1_rep	five_prime_UTR	29836227	29836259	.	+	.	Parent=Os03t0729800-00
Chr03	irgsp1_rep	CDS	29836260	29836330	.	+	0	Parent=Os03t0729800-00
Chr03	irgsp1_rep	CDS	29836432	29836477	.	+	1	Parent=Os03t0729800-00
Chr03	irgsp1_rep	CDS	29836560	29836673	.	+	0	Parent=Os03t0729800-00
Chr03	irgsp1_rep	CDS	29836765	29837541	.	+	0	Parent=Os03t0729800-00
Chr03	irgsp1_rep	CDS	29837638	29838258	.	+	0	Parent=Os03t0729800-00
Chr03	irgsp1_rep	three_prime_UTR	29838259	29838397	.	+	.	Parent=Os03t0729800-00
Chr03	irgsp1_rep	mRNA	29838538	29843305	.	-	.	ID=Os03t0729900-01;Name=Os03t0729900-01;Locus_id=Os03g0729900;Oryzabase Gene Name Synonym(s)=BSD domain protein;Note=BSD domain containing protein.;Transcript_evidence=AK242793 (DDBJ%2C Best hit);ORF_evidence=NP_001147842.1 (RefSeq);InterPro=BSD (IPR005607);NIAS_FLcDNA=J090058A01;Oryzabase=15981;TENOR=Os03t0729900-01;KEGG=Os03t0729900-01
Chr03	irgsp1_rep	five_prime_UTR	29843217	29843305	.	-	.	Parent=Os03t0729900-01
Chr03	irgsp1_rep	CDS	29842286	29843216	.	-	0	Parent=Os03t0729900-01
Chr03	irgsp1_rep	CDS	29840983	29841170	.	-	2	Parent=Os03t0729900-01
Chr03	irgsp1_rep	CDS	29838799	29839221	.	-	0	Parent=Os03t0729900-01
Chr03	irgsp1_rep	three_prime_UTR	29838538	29838798	.	-	.	Parent=Os03t0729900-01
Chr03	irgsp1_rep	mRNA	29844900	29847027	.	-	.	ID=Os03t0730000-01;Name=Os03t0730000-01;Locus_id=Os03g0730000;Note=Lecithin:cholesterol acyltransferase family protein.;Transcript_evidence=AK071679 (DDBJ%2C Best hit);ORF_evidence=Q71CE5 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: O-acyltransferase activity (GO:0008374);InterPro=Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase (IPR003386);NIAS_FLcDNA=J023108I08;Expression=AK071679;TENOR=Os03t0730000-01;KEGG=Os03t0730000-01
Chr03	irgsp1_rep	five_prime_UTR	29846721	29847027	.	-	.	Parent=Os03t0730000-01
Chr03	irgsp1_rep	CDS	29846269	29846720	.	-	0	Parent=Os03t0730000-01
Chr03	irgsp1_rep	CDS	29845240	29846185	.	-	1	Parent=Os03t0730000-01
Chr03	irgsp1_rep	three_prime_UTR	29844900	29845239	.	-	.	Parent=Os03t0730000-01
Chr03	irgsp1_rep	mRNA	29846289	29847842	.	+	.	ID=Os03t0730100-00;Name=Os03t0730100-00;Locus_id=Os03g0730100;Note=Hypothetical protein.;Transcript_evidence=EU967040 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0730100-00
Chr03	irgsp1_rep	CDS	29846289	29846567	.	+	0	Parent=Os03t0730100-00
Chr03	irgsp1_rep	CDS	29847397	29847537	.	+	0	Parent=Os03t0730100-00
Chr03	irgsp1_rep	three_prime_UTR	29847538	29847842	.	+	.	Parent=Os03t0730100-00
Chr03	irgsp1_rep	mRNA	29852604	29853062	.	+	.	ID=Os03t0730200-00;Name=Os03t0730200-00;Locus_id=Os03g0730200;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q851E9 (UniProt);InterPro=Uncharacterised conserved protein UCP031279 (IPR016972);TENOR=Os03t0730200-00;KEGG=Os03t0730200-00
Chr03	irgsp1_rep	CDS	29852604	29853062	.	+	0	Parent=Os03t0730200-00
Chr03	irgsp1_rep	mRNA	29852616	29853018	.	-	.	ID=Os03t0730301-00;Name=Os03t0730301-00;Locus_id=Os03g0730301;Note=Hypothetical protein.;Transcript_evidence=AK373217 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0730301-00
Chr03	irgsp1_rep	CDS	29852616	29853018	.	-	0	Parent=Os03t0730301-00
Chr03	irgsp1_rep	mRNA	29858907	29864431	.	+	.	ID=Os03t0730400-01;Name=Os03t0730400-01;Locus_id=Os03g0730400;CGSNL Gene Symbol=SCP19;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 19;Oryzabase Gene Symbol Synonym(s)=OsSCP19;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 19;Note=Similar to Serine carboxypeptidase.;Transcript_evidence=AK067912 (DDBJ%2C Best hit);ORF_evidence=Q10DG1 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563);NIAS_FLcDNA=J013128F10;Oryzabase=19202;Expression=AK067912;TENOR=Os03t0730400-01;KEGG=Os03t0730400-01 (EC:3.4.16.5)
Chr03	irgsp1_rep	five_prime_UTR	29858907	29859010	.	+	.	Parent=Os03t0730400-01
Chr03	irgsp1_rep	CDS	29859011	29859198	.	+	0	Parent=Os03t0730400-01
Chr03	irgsp1_rep	CDS	29860419	29860564	.	+	1	Parent=Os03t0730400-01
Chr03	irgsp1_rep	CDS	29861414	29861490	.	+	2	Parent=Os03t0730400-01
Chr03	irgsp1_rep	CDS	29861570	29861692	.	+	0	Parent=Os03t0730400-01
Chr03	irgsp1_rep	CDS	29861786	29861888	.	+	0	Parent=Os03t0730400-01
Chr03	irgsp1_rep	CDS	29862565	29862600	.	+	2	Parent=Os03t0730400-01
Chr03	irgsp1_rep	CDS	29862703	29862812	.	+	2	Parent=Os03t0730400-01
Chr03	irgsp1_rep	CDS	29862883	29862963	.	+	0	Parent=Os03t0730400-01
Chr03	irgsp1_rep	CDS	29863045	29863197	.	+	0	Parent=Os03t0730400-01
Chr03	irgsp1_rep	CDS	29863357	29863428	.	+	0	Parent=Os03t0730400-01
Chr03	irgsp1_rep	CDS	29863633	29863755	.	+	0	Parent=Os03t0730400-01
Chr03	irgsp1_rep	three_prime_UTR	29863756	29863793	.	+	.	Parent=Os03t0730400-01
Chr03	irgsp1_rep	three_prime_UTR	29863886	29863959	.	+	.	Parent=Os03t0730400-01
Chr03	irgsp1_rep	three_prime_UTR	29864064	29864109	.	+	.	Parent=Os03t0730400-01
Chr03	irgsp1_rep	three_prime_UTR	29864232	29864431	.	+	.	Parent=Os03t0730400-01
Chr03	irgsp1_rep	mRNA	29858939	29860668	.	+	.	ID=Os03t0730400-02;Name=Os03t0730400-02;Locus_id=Os03g0730400;CGSNL Gene Symbol=SCP19;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 19;Oryzabase Gene Symbol Synonym(s)=OsSCP19;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 19;Note=Similar to Serine carboxypeptidase family protein%2C expressed.;Transcript_evidence=AK104942 (DDBJ%2C Best hit);ORF_evidence=Q10DG3 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563);NIAS_FLcDNA=001-107-A07;Oryzabase=19202;Expression=AK104942;TENOR=Os03t0730400-02;KEGG=Os03t0730400-02 (EC:3.4.16.5)
Chr03	irgsp1_rep	five_prime_UTR	29858939	29859010	.	+	.	Parent=Os03t0730400-02
Chr03	irgsp1_rep	CDS	29859011	29859198	.	+	0	Parent=Os03t0730400-02
Chr03	irgsp1_rep	CDS	29860419	29860569	.	+	1	Parent=Os03t0730400-02
Chr03	irgsp1_rep	three_prime_UTR	29860570	29860668	.	+	.	Parent=Os03t0730400-02
Chr03	irgsp1_rep	mRNA	29859071	29864317	.	-	.	ID=Os03t0730433-00;Name=Os03t0730433-00;Locus_id=Os03g0730433;Note=Hypothetical protein.;Transcript_evidence=tplb0035f04 (Wheat FLcDNA);ORF_evidence=GeneMark;TENOR=Os03t0730433-00
Chr03	irgsp1_rep	five_prime_UTR	29864246	29864317	.	-	.	Parent=Os03t0730433-00
Chr03	irgsp1_rep	five_prime_UTR	29863537	29864121	.	-	.	Parent=Os03t0730433-00
Chr03	irgsp1_rep	five_prime_UTR	29862538	29863450	.	-	.	Parent=Os03t0730433-00
Chr03	irgsp1_rep	five_prime_UTR	29861986	29862377	.	-	.	Parent=Os03t0730433-00
Chr03	irgsp1_rep	five_prime_UTR	29861778	29861914	.	-	.	Parent=Os03t0730433-00
Chr03	irgsp1_rep	five_prime_UTR	29861542	29861683	.	-	.	Parent=Os03t0730433-00
Chr03	irgsp1_rep	five_prime_UTR	29860541	29860612	.	-	.	Parent=Os03t0730433-00
Chr03	irgsp1_rep	CDS	29860412	29860540	.	-	0	Parent=Os03t0730433-00
Chr03	irgsp1_rep	CDS	29859071	29859270	.	-	0	Parent=Os03t0730433-00
Chr03	irgsp1_rep	mRNA	29871085	29875758	.	+	.	ID=Os03t0730500-01;Name=Os03t0730500-01;Locus_id=Os03g0730500;CGSNL Gene Symbol=SCP20;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 20;Oryzabase Gene Symbol Synonym(s)=OsSCP20;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 20;Note=Peptidase S10%2C serine carboxypeptidase family protein.;Transcript_evidence=AK066477 (DDBJ%2C Best hit);ORF_evidence=Q10DG1 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563);NIAS_FLcDNA=J013070H07;Oryzabase=19203;Expression=AK066477;TENOR=Os03t0730500-01;KEGG=Os03t0730500-01 (EC:3.4.16.5)
Chr03	irgsp1_rep	five_prime_UTR	29871085	29871197	.	+	.	Parent=Os03t0730500-01
Chr03	irgsp1_rep	CDS	29871198	29871400	.	+	0	Parent=Os03t0730500-01
Chr03	irgsp1_rep	CDS	29871744	29871889	.	+	1	Parent=Os03t0730500-01
Chr03	irgsp1_rep	CDS	29872057	29872133	.	+	2	Parent=Os03t0730500-01
Chr03	irgsp1_rep	CDS	29872217	29872339	.	+	0	Parent=Os03t0730500-01
Chr03	irgsp1_rep	CDS	29872446	29872548	.	+	0	Parent=Os03t0730500-01
Chr03	irgsp1_rep	CDS	29872824	29872862	.	+	2	Parent=Os03t0730500-01
Chr03	irgsp1_rep	CDS	29872952	29873061	.	+	2	Parent=Os03t0730500-01
Chr03	irgsp1_rep	CDS	29873137	29873217	.	+	0	Parent=Os03t0730500-01
Chr03	irgsp1_rep	CDS	29873299	29873451	.	+	0	Parent=Os03t0730500-01
Chr03	irgsp1_rep	CDS	29874418	29874489	.	+	0	Parent=Os03t0730500-01
Chr03	irgsp1_rep	CDS	29874695	29874721	.	+	0	Parent=Os03t0730500-01
Chr03	irgsp1_rep	three_prime_UTR	29874722	29874816	.	+	.	Parent=Os03t0730500-01
Chr03	irgsp1_rep	three_prime_UTR	29874921	29875034	.	+	.	Parent=Os03t0730500-01
Chr03	irgsp1_rep	three_prime_UTR	29875144	29875189	.	+	.	Parent=Os03t0730500-01
Chr03	irgsp1_rep	three_prime_UTR	29875331	29875758	.	+	.	Parent=Os03t0730500-01
Chr03	irgsp1_rep	mRNA	29871168	29878399	.	+	.	ID=Os03t0730500-02;Name=Os03t0730500-02;Locus_id=Os03g0730500;CGSNL Gene Symbol=SCP20;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 20;Oryzabase Gene Symbol Synonym(s)=OsSCP20;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 20;Note=Peptidase S10%2C serine carboxypeptidase family protein.;Transcript_evidence=AK066640 (DDBJ%2C Best hit);ORF_evidence=Q10DG1 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563);NIAS_FLcDNA=J013073A13;Oryzabase=19203;Expression=AK066640;TENOR=Os03t0730500-02;KEGG=Os03t0730500-02 (EC:3.4.16.5)
Chr03	irgsp1_rep	five_prime_UTR	29871168	29871197	.	+	.	Parent=Os03t0730500-02
Chr03	irgsp1_rep	CDS	29871198	29871400	.	+	0	Parent=Os03t0730500-02
Chr03	irgsp1_rep	CDS	29871744	29871889	.	+	1	Parent=Os03t0730500-02
Chr03	irgsp1_rep	CDS	29872057	29872133	.	+	2	Parent=Os03t0730500-02
Chr03	irgsp1_rep	CDS	29872217	29872339	.	+	0	Parent=Os03t0730500-02
Chr03	irgsp1_rep	CDS	29872446	29872548	.	+	0	Parent=Os03t0730500-02
Chr03	irgsp1_rep	CDS	29872824	29872862	.	+	2	Parent=Os03t0730500-02
Chr03	irgsp1_rep	CDS	29872952	29873061	.	+	2	Parent=Os03t0730500-02
Chr03	irgsp1_rep	CDS	29873137	29873217	.	+	0	Parent=Os03t0730500-02
Chr03	irgsp1_rep	CDS	29873299	29873451	.	+	0	Parent=Os03t0730500-02
Chr03	irgsp1_rep	CDS	29874418	29874489	.	+	0	Parent=Os03t0730500-02
Chr03	irgsp1_rep	CDS	29874695	29874721	.	+	0	Parent=Os03t0730500-02
Chr03	irgsp1_rep	three_prime_UTR	29874722	29874816	.	+	.	Parent=Os03t0730500-02
Chr03	irgsp1_rep	three_prime_UTR	29874921	29875034	.	+	.	Parent=Os03t0730500-02
Chr03	irgsp1_rep	three_prime_UTR	29875144	29876468	.	+	.	Parent=Os03t0730500-02
Chr03	irgsp1_rep	three_prime_UTR	29878131	29878399	.	+	.	Parent=Os03t0730500-02
Chr03	irgsp1_rep	mRNA	29872916	29875190	.	-	.	ID=Os03t0730600-00;Name=Os03t0730600-00;Locus_id=Os03g0730600;Note=Non-protein coding transcript.;Transcript_evidence=tplb0035f04 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os03t0730600-00
Chr03	irgsp1_rep	exon	29874616	29875190	.	-	.	Parent=Os03t0730600-00
Chr03	irgsp1_rep	exon	29874319	29874538	.	-	.	Parent=Os03t0730600-00
Chr03	irgsp1_rep	exon	29872916	29873462	.	-	.	Parent=Os03t0730600-00
Chr03	irgsp1_rep	mRNA	29880945	29887239	.	+	.	ID=Os03t0730700-00;Name=Os03t0730700-00;Locus_id=Os03g0730700;CGSNL Gene Symbol=SCP21;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 21;Oryzabase Gene Symbol Synonym(s)=OsSCP21;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 21;Note=Similar to Serine carboxypeptidase family protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10DF6 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563);Oryzabase=19204;TENOR=Os03t0730700-00
Chr03	irgsp1_rep	CDS	29880945	29881114	.	+	0	Parent=Os03t0730700-00
Chr03	irgsp1_rep	CDS	29883160	29883305	.	+	1	Parent=Os03t0730700-00
Chr03	irgsp1_rep	CDS	29884305	29884381	.	+	2	Parent=Os03t0730700-00
Chr03	irgsp1_rep	CDS	29884465	29884587	.	+	0	Parent=Os03t0730700-00
Chr03	irgsp1_rep	CDS	29884669	29884737	.	+	0	Parent=Os03t0730700-00
Chr03	irgsp1_rep	CDS	29885712	29885813	.	+	0	Parent=Os03t0730700-00
Chr03	irgsp1_rep	CDS	29885886	29885966	.	+	0	Parent=Os03t0730700-00
Chr03	irgsp1_rep	CDS	29886330	29886401	.	+	0	Parent=Os03t0730700-00
Chr03	irgsp1_rep	CDS	29887156	29887239	.	+	0	Parent=Os03t0730700-00
Chr03	irgsp1_rep	mRNA	29880989	29887244	.	-	.	ID=Os03t0730750-00;Name=Os03t0730750-00;Locus_id=Os03g0730750;Note=Non-protein coding transcript.;Transcript_evidence=tplb0035f04 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os03t0730750-00
Chr03	irgsp1_rep	exon	29887183	29887244	.	-	.	Parent=Os03t0730750-00
Chr03	irgsp1_rep	exon	29885276	29887004	.	-	.	Parent=Os03t0730750-00
Chr03	irgsp1_rep	exon	29884661	29884921	.	-	.	Parent=Os03t0730750-00
Chr03	irgsp1_rep	exon	29884459	29884578	.	-	.	Parent=Os03t0730750-00
Chr03	irgsp1_rep	exon	29883092	29883374	.	-	.	Parent=Os03t0730750-00
Chr03	irgsp1_rep	exon	29880989	29881121	.	-	.	Parent=Os03t0730750-00
Chr03	irgsp1_rep	mRNA	29889651	29910968	.	-	.	ID=Os03t0730800-01;Name=Os03t0730800-01;Locus_id=Os03g0730800;CGSNL Gene Symbol=ECA2;CGSNL Gene Name=ENDOPLASMIC RETICULUM-TYPE CA2+-ATPASE2;Oryzabase Gene Symbol Synonym(s)=OsECA2%2C OsER3ATP3;Oryzabase Gene Name Synonym(s)=endoplasmic reticulum-type Ca2+ P-Type ATPase 2;Note=Calcium-transporting ATPase 3%2C endoplasmic reticulum-type (EC 3.6.3.8).;Transcript_evidence=AK073220 (DDBJ%2C Best hit);ORF_evidence=XP_002320682.1 (RefSeq);GO=Biological Process: cation transport (GO:0006812),Biological Process: metabolic process (GO:0008152),Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C catalyzing transmembrane movement of substances (GO:0016820),Molecular Function: metal ion binding (GO:0046872);InterPro=ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),ATPase%2C P-type cation-transporter%2C N-terminal (IPR004014),Haloacid dehalogenase-like hydrolase (IPR005834),ATPase%2C P-type%2C ATPase-associated domain (IPR008250),ATPase%2C P-type phosphorylation site (IPR018303),HAD-like domain (IPR023214),ATPase%2C P-type%2C  transmembrane domain (IPR023298),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C  P-type%2C cytoplasmic transduction domain A (IPR023300),ATPase%2C cation-transporting%2C domain N (IPR023306);NIAS_FLcDNA=J033000K23;Oryzabase=15453;Expression=AK073220;TENOR=Os03t0730800-01;KEGG=Os03t0730800-01 (EC:3.6.3.8)
Chr03	irgsp1_rep	five_prime_UTR	29910918	29910968	.	-	.	Parent=Os03t0730800-01
Chr03	irgsp1_rep	CDS	29910885	29910917	.	-	0	Parent=Os03t0730800-01
Chr03	irgsp1_rep	CDS	29910740	29910790	.	-	0	Parent=Os03t0730800-01
Chr03	irgsp1_rep	CDS	29910598	29910631	.	-	0	Parent=Os03t0730800-01
Chr03	irgsp1_rep	CDS	29909614	29909631	.	-	2	Parent=Os03t0730800-01
Chr03	irgsp1_rep	CDS	29907264	29907400	.	-	2	Parent=Os03t0730800-01
Chr03	irgsp1_rep	CDS	29907100	29907174	.	-	0	Parent=Os03t0730800-01
Chr03	irgsp1_rep	CDS	29906487	29906532	.	-	0	Parent=Os03t0730800-01
Chr03	irgsp1_rep	CDS	29905558	29905617	.	-	2	Parent=Os03t0730800-01
Chr03	irgsp1_rep	CDS	29905380	29905460	.	-	2	Parent=Os03t0730800-01
Chr03	irgsp1_rep	CDS	29903761	29903846	.	-	2	Parent=Os03t0730800-01
Chr03	irgsp1_rep	CDS	29902789	29902890	.	-	0	Parent=Os03t0730800-01
Chr03	irgsp1_rep	CDS	29902565	29902618	.	-	0	Parent=Os03t0730800-01
Chr03	irgsp1_rep	CDS	29902183	29902284	.	-	0	Parent=Os03t0730800-01
Chr03	irgsp1_rep	CDS	29900262	29900320	.	-	0	Parent=Os03t0730800-01
Chr03	irgsp1_rep	CDS	29899496	29899640	.	-	1	Parent=Os03t0730800-01
Chr03	irgsp1_rep	CDS	29899205	29899312	.	-	0	Parent=Os03t0730800-01
Chr03	irgsp1_rep	CDS	29898555	29898707	.	-	0	Parent=Os03t0730800-01
Chr03	irgsp1_rep	CDS	29898344	29898448	.	-	0	Parent=Os03t0730800-01
Chr03	irgsp1_rep	CDS	29897505	29897701	.	-	0	Parent=Os03t0730800-01
Chr03	irgsp1_rep	CDS	29897178	29897289	.	-	1	Parent=Os03t0730800-01
Chr03	irgsp1_rep	CDS	29896831	29896995	.	-	0	Parent=Os03t0730800-01
Chr03	irgsp1_rep	three_prime_UTR	29896599	29896830	.	-	.	Parent=Os03t0730800-01
Chr03	irgsp1_rep	three_prime_UTR	29895805	29895862	.	-	.	Parent=Os03t0730800-01
Chr03	irgsp1_rep	three_prime_UTR	29895547	29895639	.	-	.	Parent=Os03t0730800-01
Chr03	irgsp1_rep	three_prime_UTR	29895314	29895364	.	-	.	Parent=Os03t0730800-01
Chr03	irgsp1_rep	three_prime_UTR	29895161	29895210	.	-	.	Parent=Os03t0730800-01
Chr03	irgsp1_rep	three_prime_UTR	29894447	29894542	.	-	.	Parent=Os03t0730800-01
Chr03	irgsp1_rep	three_prime_UTR	29892743	29892797	.	-	.	Parent=Os03t0730800-01
Chr03	irgsp1_rep	three_prime_UTR	29892532	29892617	.	-	.	Parent=Os03t0730800-01
Chr03	irgsp1_rep	three_prime_UTR	29891072	29891220	.	-	.	Parent=Os03t0730800-01
Chr03	irgsp1_rep	three_prime_UTR	29890511	29890616	.	-	.	Parent=Os03t0730800-01
Chr03	irgsp1_rep	three_prime_UTR	29890335	29890388	.	-	.	Parent=Os03t0730800-01
Chr03	irgsp1_rep	three_prime_UTR	29890134	29890182	.	-	.	Parent=Os03t0730800-01
Chr03	irgsp1_rep	three_prime_UTR	29889651	29890018	.	-	.	Parent=Os03t0730800-01
Chr03	irgsp1_rep	mRNA	29910756	29911025	.	+	.	ID=Os03t0730875-00;Name=Os03t0730875-00;Locus_id=Os03g0730875;Note=Non-protein coding transcript.;Transcript_evidence=EU948992 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0730875-00
Chr03	irgsp1_rep	exon	29910756	29911025	.	+	.	Parent=Os03t0730875-00
Chr03	irgsp1_rep	mRNA	29927565	29930644	.	-	.	ID=Os03t0731025-01;Name=Os03t0731025-01;Locus_id=Os03g0731025;Note=Hypothetical gene.;Transcript_evidence=AK287812 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065179M14;TENOR=Os03t0731025-01;KEGG=Os03t0731025-01
Chr03	irgsp1_rep	five_prime_UTR	29929751	29930644	.	-	.	Parent=Os03t0731025-01
Chr03	irgsp1_rep	five_prime_UTR	29928148	29928391	.	-	.	Parent=Os03t0731025-01
Chr03	irgsp1_rep	CDS	29927821	29928147	.	-	0	Parent=Os03t0731025-01
Chr03	irgsp1_rep	three_prime_UTR	29927565	29927820	.	-	.	Parent=Os03t0731025-01
Chr03	irgsp1_rep	mRNA	29927692	29930401	.	+	.	ID=Os03t0731050-00;Name=Os03t0731050-00;Locus_id=Os03g0731050;Note=Similar to OSIGBa0138E08-OSIGBa0161L23.2 protein.;Transcript_evidence=BT033198 (DDBJ);ORF_evidence=Q01HM5 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: acetylglucosaminyltransferase activity (GO:0008375);InterPro=Glycosyl transferase%2C family 14 (IPR003406);TENOR=Os03t0731050-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	29927692	29928054	.	+	0	Parent=Os03t0731050-00
Chr03	irgsp1_rep	CDS	29928110	29928391	.	+	0	Parent=Os03t0731050-00
Chr03	irgsp1_rep	CDS	29929751	29930392	.	+	0	Parent=Os03t0731050-00
Chr03	irgsp1_rep	three_prime_UTR	29930393	29930401	.	+	.	Parent=Os03t0731050-00
Chr03	irgsp1_rep	mRNA	29931433	29932639	.	+	.	ID=Os03t0731100-01;Name=Os03t0731100-01;Locus_id=Os03g0731100;Note=Photosystem I reaction centre subunit N family protein.;Transcript_evidence=AK070777 (DDBJ%2C Best hit);ORF_evidence=Q6AVG2 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem I (GO:0009522),Cellular Component: thylakoid membrane (GO:0042651),Molecular Function: calmodulin binding (GO:0005516);InterPro=Photosystem I PsaN%2C reaction centre subunit N (IPR008796);NIAS_FLcDNA=J023070C11;Expression=AK070777;TENOR=Os03t0731100-01;KEGG=Os03t0731100-01
Chr03	irgsp1_rep	five_prime_UTR	29931433	29931433	.	+	.	Parent=Os03t0731100-01
Chr03	irgsp1_rep	CDS	29931434	29931626	.	+	0	Parent=Os03t0731100-01
Chr03	irgsp1_rep	CDS	29931727	29931773	.	+	2	Parent=Os03t0731100-01
Chr03	irgsp1_rep	CDS	29932303	29932437	.	+	0	Parent=Os03t0731100-01
Chr03	irgsp1_rep	three_prime_UTR	29932438	29932639	.	+	.	Parent=Os03t0731100-01
Chr03	irgsp1_rep	mRNA	29937122	29946682	.	+	.	ID=Os03t0731500-01;Name=Os03t0731500-01;Locus_id=Os03g0731500;Note=Similar to Major surface glycoprotein-like.;Transcript_evidence=AK099947 (DDBJ%2C Best hit);ORF_evidence=D0VLV1 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: cell adhesion (GO:0007155),Cellular Component: membrane (GO:0016020),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Epidermal growth factor-like%2C type 3 (IPR000742),Peptidase M8%2C leishmanolysin (IPR001577),Epidermal growth factor-like (IPR006210),EGF-like region%2C conserved site (IPR013032),EGF%2C extracellular (IPR013111),Frizzled domain (IPR020067);NIAS_FLcDNA=J013123C23;Expression=AK099947;TENOR=Os03t0731500-01;KEGG=Os03t0731500-01 (EC:3.4.24.36)
Chr03	irgsp1_rep	five_prime_UTR	29937122	29937531	.	+	.	Parent=Os03t0731500-01
Chr03	irgsp1_rep	CDS	29937532	29937597	.	+	0	Parent=Os03t0731500-01
Chr03	irgsp1_rep	CDS	29938044	29938403	.	+	0	Parent=Os03t0731500-01
Chr03	irgsp1_rep	CDS	29938483	29938623	.	+	0	Parent=Os03t0731500-01
Chr03	irgsp1_rep	CDS	29938800	29938932	.	+	0	Parent=Os03t0731500-01
Chr03	irgsp1_rep	CDS	29939232	29939345	.	+	2	Parent=Os03t0731500-01
Chr03	irgsp1_rep	CDS	29939441	29939589	.	+	2	Parent=Os03t0731500-01
Chr03	irgsp1_rep	CDS	29941703	29941795	.	+	0	Parent=Os03t0731500-01
Chr03	irgsp1_rep	CDS	29941907	29941967	.	+	0	Parent=Os03t0731500-01
Chr03	irgsp1_rep	CDS	29942068	29942400	.	+	2	Parent=Os03t0731500-01
Chr03	irgsp1_rep	CDS	29942986	29943112	.	+	2	Parent=Os03t0731500-01
Chr03	irgsp1_rep	CDS	29943210	29943309	.	+	1	Parent=Os03t0731500-01
Chr03	irgsp1_rep	CDS	29944188	29944257	.	+	0	Parent=Os03t0731500-01
Chr03	irgsp1_rep	CDS	29944337	29944489	.	+	2	Parent=Os03t0731500-01
Chr03	irgsp1_rep	CDS	29944875	29944970	.	+	2	Parent=Os03t0731500-01
Chr03	irgsp1_rep	CDS	29945243	29945559	.	+	2	Parent=Os03t0731500-01
Chr03	irgsp1_rep	CDS	29946074	29946298	.	+	0	Parent=Os03t0731500-01
Chr03	irgsp1_rep	three_prime_UTR	29946299	29946682	.	+	.	Parent=Os03t0731500-01
Chr03	irgsp1_rep	mRNA	29937158	29946679	.	+	.	ID=Os03t0731500-02;Name=Os03t0731500-02;Locus_id=Os03g0731500;Note=Similar to Major surface glycoprotein-like.;Transcript_evidence=AK119888 (DDBJ%2C Best hit),AK067789 (DDBJ%2C Best hit);ORF_evidence=D0VLV1 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: cell adhesion (GO:0007155),Cellular Component: membrane (GO:0016020),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Epidermal growth factor-like%2C type 3 (IPR000742),Peptidase M8%2C leishmanolysin (IPR001577),Epidermal growth factor-like (IPR006210),EGF-like region%2C conserved site (IPR013032),EGF%2C extracellular (IPR013111),Frizzled domain (IPR020067);NIAS_FLcDNA=002-179-H09,J013116D21;Expression=AK119888;TENOR=Os03t0731500-02;KEGG=Os03t0731500-02 (EC:3.4.24.36)
Chr03	irgsp1_rep	five_prime_UTR	29937158	29937531	.	+	.	Parent=Os03t0731500-02
Chr03	irgsp1_rep	CDS	29937532	29937597	.	+	0	Parent=Os03t0731500-02
Chr03	irgsp1_rep	CDS	29938044	29938403	.	+	0	Parent=Os03t0731500-02
Chr03	irgsp1_rep	CDS	29938483	29938623	.	+	0	Parent=Os03t0731500-02
Chr03	irgsp1_rep	CDS	29938800	29938932	.	+	0	Parent=Os03t0731500-02
Chr03	irgsp1_rep	CDS	29939232	29939345	.	+	2	Parent=Os03t0731500-02
Chr03	irgsp1_rep	CDS	29939441	29939589	.	+	2	Parent=Os03t0731500-02
Chr03	irgsp1_rep	CDS	29941703	29941795	.	+	0	Parent=Os03t0731500-02
Chr03	irgsp1_rep	CDS	29941907	29941967	.	+	0	Parent=Os03t0731500-02
Chr03	irgsp1_rep	CDS	29942068	29942400	.	+	2	Parent=Os03t0731500-02
Chr03	irgsp1_rep	CDS	29942986	29943112	.	+	2	Parent=Os03t0731500-02
Chr03	irgsp1_rep	CDS	29943210	29943309	.	+	1	Parent=Os03t0731500-02
Chr03	irgsp1_rep	CDS	29944188	29944257	.	+	0	Parent=Os03t0731500-02
Chr03	irgsp1_rep	CDS	29944337	29944489	.	+	2	Parent=Os03t0731500-02
Chr03	irgsp1_rep	CDS	29944875	29944970	.	+	2	Parent=Os03t0731500-02
Chr03	irgsp1_rep	CDS	29945243	29945559	.	+	2	Parent=Os03t0731500-02
Chr03	irgsp1_rep	CDS	29946074	29946298	.	+	0	Parent=Os03t0731500-02
Chr03	irgsp1_rep	three_prime_UTR	29946299	29946679	.	+	.	Parent=Os03t0731500-02
Chr03	irgsp1_rep	mRNA	29948971	29950796	.	+	.	ID=Os03t0731800-01;Name=Os03t0731800-01;Locus_id=Os03g0731800;Note=Similar to Regulatory protein.;Transcript_evidence=AK105543 (DDBJ%2C Best hit);ORF_evidence=B6TR81 (UniProt);InterPro=Nucleotide-diphospho-sugar transferase (IPR005069);NIAS_FLcDNA=001-127-H12;Expression=AK105543;TENOR=Os03t0731800-01;KEGG=Os03t0731800-01
Chr03	irgsp1_rep	five_prime_UTR	29948971	29949022	.	+	.	Parent=Os03t0731800-01
Chr03	irgsp1_rep	CDS	29949023	29949193	.	+	0	Parent=Os03t0731800-01
Chr03	irgsp1_rep	CDS	29949299	29949682	.	+	0	Parent=Os03t0731800-01
Chr03	irgsp1_rep	CDS	29950015	29950515	.	+	0	Parent=Os03t0731800-01
Chr03	irgsp1_rep	three_prime_UTR	29950516	29950796	.	+	.	Parent=Os03t0731800-01
Chr03	irgsp1_rep	mRNA	29950002	29950256	.	-	.	ID=Os03t0731850-00;Name=Os03t0731850-00;Locus_id=Os03g0731850;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os03t0731850-00
Chr03	irgsp1_rep	CDS	29950002	29950256	.	-	0	Parent=Os03t0731850-00
Chr03	irgsp1_rep	mRNA	29950669	29953904	.	-	.	ID=Os03t0731900-01;Name=Os03t0731900-01;Locus_id=Os03g0731900;RAP-DB Gene Symbol Synonym(s)=OsHMBPP%2C LAS1%2C LAS1/OsHMBPP;RAP-DB Gene Name Synonym(s)=4-hydroxy-3-methylbut-2-enyl diphosphate reductase%2C lethal albinic seedling 1;CGSNL Gene Symbol=HDR;CGSNL Gene Name=HMBDP REDUCTASE;Oryzabase Gene Symbol Synonym(s)=OsHDR%2C OsIspH%2C IspH%2C OsHDR1%2C HDR1;Oryzabase Gene Name Synonym(s)=1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase%2C HMBDP reductase%2C HMBPP reductase 1%2C 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1;Note=4-hydroxy-3-methylbut-2-enyl diphosphate reductase%2C Regulation of early chloroplast development%2C Isoprenoids biosynthesis;Transcript_evidence=AK121561,AK062113,AK064873;ORF_evidence=Q6AVG6;GO=Biological Process: isopentenyl diphosphate biosynthetic process%2C methylerythritol 4-phosphate pathway (GO:0019288),Biological Process: dimethylallyl diphosphate biosynthetic process (GO:0050992),Molecular Function: metal ion binding (GO:0046872),Molecular Function: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity (GO:0051745);InterPro=4-hydroxy-3-methylbut-2-enyl diphosphate reductase (IPR003451);NIAS_FLcDNA=J033034C23,001-045-B12,J013000J09;Manual Curation=July 27%2C 2020;Literature_PMID=32712772;Oryzabase=14686;Expression=AK121561;TENOR=Os03t0731900-01;KEGG=Os03t0731900-01 (EC:1.17.1.4);Subcellular location=chloroplast (GO:0009507)
Chr03	irgsp1_rep	five_prime_UTR	29953795	29953904	.	-	.	Parent=Os03t0731900-01
Chr03	irgsp1_rep	CDS	29953539	29953794	.	-	0	Parent=Os03t0731900-01
Chr03	irgsp1_rep	CDS	29953259	29953455	.	-	2	Parent=Os03t0731900-01
Chr03	irgsp1_rep	CDS	29952670	29952849	.	-	0	Parent=Os03t0731900-01
Chr03	irgsp1_rep	CDS	29952436	29952567	.	-	0	Parent=Os03t0731900-01
Chr03	irgsp1_rep	CDS	29952266	29952340	.	-	0	Parent=Os03t0731900-01
Chr03	irgsp1_rep	CDS	29952067	29952172	.	-	0	Parent=Os03t0731900-01
Chr03	irgsp1_rep	CDS	29951853	29951947	.	-	2	Parent=Os03t0731900-01
Chr03	irgsp1_rep	CDS	29951502	29951687	.	-	0	Parent=Os03t0731900-01
Chr03	irgsp1_rep	CDS	29951230	29951316	.	-	0	Parent=Os03t0731900-01
Chr03	irgsp1_rep	CDS	29951043	29951108	.	-	0	Parent=Os03t0731900-01
Chr03	irgsp1_rep	three_prime_UTR	29950669	29951042	.	-	.	Parent=Os03t0731900-01
Chr03	irgsp1_rep	mRNA	29957015	29974490	.	-	.	ID=Os03t0732000-00;Name=Os03t0732000-00;Locus_id=Os03g0732000;CGSNL Gene Symbol=HDR2;CGSNL Gene Name=HMBPP REDUCTASE 2;Oryzabase Gene Symbol Synonym(s)=OsHDR2;Oryzabase Gene Name Synonym(s)=HMBPP reductase 2%2C 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2;Note=Similar to 4-hydroxy-3-methylbut-2-enyl diphosphate reductase.;Transcript_evidence=AK354331 (DDBJ);ORF_evidence=C0PDR3 (UniProt);GO=Biological Process: isopentenyl diphosphate biosynthetic process%2C mevalonate-independent pathway (GO:0019288),Biological Process: oxidation-reduction process (GO:0055114);InterPro=LytB protein (IPR003451);Oryzabase=23333;TENOR=Os03t0732000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	29974184	29974490	.	-	0	Parent=Os03t0732000-00
Chr03	irgsp1_rep	CDS	29972920	29973122	.	-	2	Parent=Os03t0732000-00
Chr03	irgsp1_rep	CDS	29972364	29972543	.	-	0	Parent=Os03t0732000-00
Chr03	irgsp1_rep	CDS	29958660	29958791	.	-	0	Parent=Os03t0732000-00
Chr03	irgsp1_rep	CDS	29958452	29958526	.	-	0	Parent=Os03t0732000-00
Chr03	irgsp1_rep	CDS	29958267	29958372	.	-	0	Parent=Os03t0732000-00
Chr03	irgsp1_rep	CDS	29957976	29958076	.	-	2	Parent=Os03t0732000-00
Chr03	irgsp1_rep	CDS	29957671	29957856	.	-	0	Parent=Os03t0732000-00
Chr03	irgsp1_rep	CDS	29957223	29957309	.	-	0	Parent=Os03t0732000-00
Chr03	irgsp1_rep	CDS	29957015	29957086	.	-	0	Parent=Os03t0732000-00
Chr03	irgsp1_rep	mRNA	30003190	30014029	.	+	.	ID=Os03t0732100-01;Name=Os03t0732100-01;Locus_id=Os03g0732100;Note=Similar to Homeodomain protein JUBEL1.;Transcript_evidence=AK287476 (DDBJ%2C Best hit);ORF_evidence=D4QFI0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),POX (IPR006563),Homeobox KN domain (IPR008422),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);NIAS_FLcDNA=J043023B19;TENOR=Os03t0732100-01;KEGG=Os03t0732100-01
Chr03	irgsp1_rep	five_prime_UTR	30003190	30003451	.	+	.	Parent=Os03t0732100-01
Chr03	irgsp1_rep	five_prime_UTR	30003632	30003718	.	+	.	Parent=Os03t0732100-01
Chr03	irgsp1_rep	CDS	30003719	30005090	.	+	0	Parent=Os03t0732100-01
Chr03	irgsp1_rep	CDS	30006455	30006842	.	+	2	Parent=Os03t0732100-01
Chr03	irgsp1_rep	CDS	30008641	30008701	.	+	1	Parent=Os03t0732100-01
Chr03	irgsp1_rep	CDS	30012932	30013483	.	+	0	Parent=Os03t0732100-01
Chr03	irgsp1_rep	three_prime_UTR	30013484	30014029	.	+	.	Parent=Os03t0732100-01
Chr03	irgsp1_rep	mRNA	29976199	29978391	.	-	.	ID=Os03t0732200-01;Name=Os03t0732200-01;Locus_id=Os03g0732200;Note=Similar to dynamin-2A.;Transcript_evidence=AK287760 (DDBJ%2C Best hit);ORF_evidence=NP_001152484.1 (RefSeq);NIAS_FLcDNA=J065162K06;TENOR=Os03t0732200-01;KEGG=Os03t0732200-01
Chr03	irgsp1_rep	five_prime_UTR	29978024	29978391	.	-	.	Parent=Os03t0732200-01
Chr03	irgsp1_rep	CDS	29977790	29978023	.	-	0	Parent=Os03t0732200-01
Chr03	irgsp1_rep	CDS	29977636	29977701	.	-	0	Parent=Os03t0732200-01
Chr03	irgsp1_rep	three_prime_UTR	29977486	29977635	.	-	.	Parent=Os03t0732200-01
Chr03	irgsp1_rep	three_prime_UTR	29976199	29977380	.	-	.	Parent=Os03t0732200-01
Chr03	irgsp1_rep	mRNA	30006382	30006846	.	-	.	ID=Os03t0732700-01;Name=Os03t0732700-01;Locus_id=Os03g0732700;Note=Similar to Homeodomain protein JUBEL1.;Transcript_evidence=AK107908 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-134-G03;Expression=AK107908;TENOR=Os03t0732700-01;KEGG=Os03t0732700-01
Chr03	irgsp1_rep	five_prime_UTR	30006807	30006846	.	-	.	Parent=Os03t0732700-01
Chr03	irgsp1_rep	CDS	30006477	30006806	.	-	0	Parent=Os03t0732700-01
Chr03	irgsp1_rep	three_prime_UTR	30006382	30006476	.	-	.	Parent=Os03t0732700-01
Chr03	irgsp1_rep	mRNA	30023119	30024758	.	-	.	ID=Os03t0733000-01;Name=Os03t0733000-01;Locus_id=Os03g0733000;Note=Conserved hypothetical protein.;Transcript_evidence=AK120740 (DDBJ%2C Best hit);ORF_evidence=A2XLP9 (UniProt);NIAS_FLcDNA=J023003O17;Expression=AK120740;TENOR=Os03t0733000-01;KEGG=Os03t0733000-01
Chr03	irgsp1_rep	five_prime_UTR	30024704	30024758	.	-	.	Parent=Os03t0733000-01
Chr03	irgsp1_rep	CDS	30024549	30024703	.	-	0	Parent=Os03t0733000-01
Chr03	irgsp1_rep	CDS	30023327	30023402	.	-	1	Parent=Os03t0733000-01
Chr03	irgsp1_rep	three_prime_UTR	30023119	30023326	.	-	.	Parent=Os03t0733000-01
Chr03	irgsp1_rep	mRNA	30027665	30029012	.	+	.	ID=Os03t0733200-00;Name=Os03t0733200-00;Locus_id=Os03g0733200;Note=Non-protein coding transcript.;Transcript_evidence=CT835201 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os03t0733200-00
Chr03	irgsp1_rep	exon	30027665	30029012	.	+	.	Parent=Os03t0733200-00
Chr03	irgsp1_rep	mRNA	30039117	30042858	.	-	.	ID=Os03t0733400-01;Name=Os03t0733400-01;Locus_id=Os03g0733400;Note=Zinc finger%2C BED-type predicted domain containing protein.;Transcript_evidence=AK121128 (DDBJ%2C Best hit);ORF_evidence=B6SRN0 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Zinc finger%2C BED-type predicted (IPR003656),HAT dimerisation (IPR008906),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J023075B19;Expression=AK121128;TENOR=Os03t0733400-01;KEGG=Os03t0733400-01
Chr03	irgsp1_rep	five_prime_UTR	30041588	30042858	.	-	.	Parent=Os03t0733400-01
Chr03	irgsp1_rep	CDS	30039419	30041587	.	-	0	Parent=Os03t0733400-01
Chr03	irgsp1_rep	three_prime_UTR	30039117	30039418	.	-	.	Parent=Os03t0733400-01
Chr03	irgsp1_rep	mRNA	30039186	30043042	.	+	.	ID=Os03t0733500-00;Name=Os03t0733500-00;Locus_id=Os03g0733500;Note=Hypothetical protein.;Transcript_evidence=tplb0026a01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0733500-00
Chr03	irgsp1_rep	five_prime_UTR	30039186	30039551	.	+	.	Parent=Os03t0733500-00
Chr03	irgsp1_rep	CDS	30039552	30039827	.	+	0	Parent=Os03t0733500-00
Chr03	irgsp1_rep	three_prime_UTR	30039828	30041599	.	+	.	Parent=Os03t0733500-00
Chr03	irgsp1_rep	three_prime_UTR	30042907	30043042	.	+	.	Parent=Os03t0733500-00
Chr03	irgsp1_rep	mRNA	30045181	30048795	.	-	.	ID=Os03t0733600-01;Name=Os03t0733600-01;Locus_id=Os03g0733600;RAP-DB Gene Symbol Synonym(s)=OsGIF1%2C MKB3;RAP-DB Gene Name Synonym(s)=Growth-regulating factor interacting factor 1%2C GRF interacting factor 1%2C MAKIBA3;CGSNL Gene Symbol=GIF3;CGSNL Gene Name=GRF-INTERACTING FACTOR 3;Oryzabase Gene Symbol Synonym(s)=OsGIF3%2C OsGIF1%2C GIF1%2C MKB3;Oryzabase Gene Name Synonym(s)=GRF1-interacting factor 3%2C GRF-interacting factor 3%2C Growth-regulating factor interacting factor 1%2C GRF interacting factor 1%2C MAKIBA3%2C MAKIBA 3;Note=Transcriptional cofactor%2C Ortholog of Arabidopsis ANGUSTIFOLIA3(AN3)%2C Regulation of stem%2C leaf and grain size%2C Positive regulation of cell proliferation;Transcript_evidence=AK058575;ORF_evidence=Q6AVI1;GO=Molecular Function: transcription coactivator activity (GO:0003713);InterPro=SS18 family (IPR007726);NIAS_FLcDNA=001-017-F01;Manual Curation=January 15%2C 2019;Literature_PMID=29567670,29051769;Oryzabase=9796;Expression=AK058575;TENOR=Os03t0733600-01;KEGG=Os03t0733600-01;Subcellular location=nucleus (GO:0005634) [mainly], cytoplasm (GO:0005737)
Chr03	irgsp1_rep	five_prime_UTR	30048561	30048795	.	-	.	Parent=Os03t0733600-01
Chr03	irgsp1_rep	CDS	30048471	30048560	.	-	0	Parent=Os03t0733600-01
Chr03	irgsp1_rep	CDS	30046877	30046953	.	-	0	Parent=Os03t0733600-01
Chr03	irgsp1_rep	CDS	30046049	30046133	.	-	1	Parent=Os03t0733600-01
Chr03	irgsp1_rep	CDS	30045516	30045947	.	-	0	Parent=Os03t0733600-01
Chr03	irgsp1_rep	three_prime_UTR	30045181	30045515	.	-	.	Parent=Os03t0733600-01
Chr03	irgsp1_rep	mRNA	30062508	30066110	.	-	.	ID=Os03t0733800-00;Name=Os03t0733800-00;Locus_id=Os03g0733800;Oryzabase Gene Symbol Synonym(s)=ERO1%2C Ero1;Oryzabase Gene Name Synonym(s)=ER membrane-localized sulfhydryl oxidase Ero1%2C ER membrane-localized sulfhydryl oxidase 1;Note=Endoplasmic reticulum oxidoreductin 1 family protein.;Transcript_evidence=AK332376 (DDBJ);ORF_evidence=NP_001148525.1 (RefSeq);GO=Biological Process: protein thiol-disulfide exchange (GO:0006467),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: endoplasmic reticulum membrane (GO:0005789),Molecular Function: oxidoreductase activity%2C acting on a sulfur group of donors%2C disulfide as acceptor (GO:0016671),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Endoplasmic reticulum oxidoreductin 1 (IPR007266);Oryzabase=9286;TENOR=Os03t0733800-00;KEGG=Os03t0733800-00
Chr03	irgsp1_rep	CDS	30065889	30066110	.	-	0	Parent=Os03t0733800-00
Chr03	irgsp1_rep	CDS	30065637	30065768	.	-	0	Parent=Os03t0733800-00
Chr03	irgsp1_rep	CDS	30064583	30064838	.	-	0	Parent=Os03t0733800-00
Chr03	irgsp1_rep	CDS	30064377	30064487	.	-	2	Parent=Os03t0733800-00
Chr03	irgsp1_rep	CDS	30063969	30064087	.	-	2	Parent=Os03t0733800-00
Chr03	irgsp1_rep	CDS	30063777	30063881	.	-	0	Parent=Os03t0733800-00
Chr03	irgsp1_rep	CDS	30063445	30063647	.	-	0	Parent=Os03t0733800-00
Chr03	irgsp1_rep	CDS	30063235	30063358	.	-	1	Parent=Os03t0733800-00
Chr03	irgsp1_rep	CDS	30062747	30062899	.	-	0	Parent=Os03t0733800-00
Chr03	irgsp1_rep	three_prime_UTR	30062730	30062746	.	-	.	Parent=Os03t0733800-00
Chr03	irgsp1_rep	three_prime_UTR	30062508	30062646	.	-	.	Parent=Os03t0733800-00
Chr03	irgsp1_rep	mRNA	30070303	30071057	.	+	.	ID=Os03t0733900-01;Name=Os03t0733900-01;Locus_id=Os03g0733900;Note=Conserved hypothetical protein.;Transcript_evidence=AK289197 (DDBJ%2C Best hit);ORF_evidence=NP_001173632.1 (RefSeq);NIAS_FLcDNA=J100046G21;TENOR=Os03t0733900-01;KEGG=Os03t0733900-01
Chr03	irgsp1_rep	five_prime_UTR	30070303	30070421	.	+	.	Parent=Os03t0733900-01
Chr03	irgsp1_rep	five_prime_UTR	30070536	30070547	.	+	.	Parent=Os03t0733900-01
Chr03	irgsp1_rep	CDS	30070548	30070736	.	+	0	Parent=Os03t0733900-01
Chr03	irgsp1_rep	three_prime_UTR	30070737	30071057	.	+	.	Parent=Os03t0733900-01
Chr03	irgsp1_rep	mRNA	30071523	30072291	.	+	.	ID=Os03t0734000-01;Name=Os03t0734000-01;Locus_id=Os03g0734000;Note=Pentatricopeptide repeat containing protein.;Transcript_evidence=AK064264 (DDBJ%2C Best hit);ORF_evidence=A2XLQ7 (UniProt);NIAS_FLcDNA=002-105-D10;Expression=AK064264;TENOR=Os03t0734000-01;KEGG=Os03t0734000-01
Chr03	irgsp1_rep	five_prime_UTR	30071523	30071580	.	+	.	Parent=Os03t0734000-01
Chr03	irgsp1_rep	CDS	30071581	30071626	.	+	0	Parent=Os03t0734000-01
Chr03	irgsp1_rep	CDS	30071737	30071924	.	+	2	Parent=Os03t0734000-01
Chr03	irgsp1_rep	three_prime_UTR	30071925	30072291	.	+	.	Parent=Os03t0734000-01
Chr03	irgsp1_rep	mRNA	30074926	30075699	.	+	.	ID=Os03t0734100-01;Name=Os03t0734100-01;Locus_id=Os03g0734100;Note=Conserved hypothetical protein.;Transcript_evidence=AK119903 (DDBJ%2C Best hit);ORF_evidence=A2XLQ8 (UniProt);NIAS_FLcDNA=002-181-E10;Expression=AK119903;TENOR=Os03t0734100-01;KEGG=Os03t0734100-01
Chr03	irgsp1_rep	five_prime_UTR	30074926	30075006	.	+	.	Parent=Os03t0734100-01
Chr03	irgsp1_rep	CDS	30075007	30075052	.	+	0	Parent=Os03t0734100-01
Chr03	irgsp1_rep	CDS	30075318	30075520	.	+	2	Parent=Os03t0734100-01
Chr03	irgsp1_rep	three_prime_UTR	30075521	30075699	.	+	.	Parent=Os03t0734100-01
Chr03	irgsp1_rep	mRNA	30074987	30075707	.	+	.	ID=Os03t0734100-02;Name=Os03t0734100-02;Locus_id=Os03g0734100;Note=Conserved hypothetical protein.;Transcript_evidence=AK064199 (DDBJ%2C Best hit);ORF_evidence=A2XLQ8 (UniProt);NIAS_FLcDNA=002-104-D08;Expression=AK064199;TENOR=Os03t0734100-02;KEGG=Os03t0734100-02
Chr03	irgsp1_rep	five_prime_UTR	30074987	30075006	.	+	.	Parent=Os03t0734100-02
Chr03	irgsp1_rep	CDS	30075007	30075052	.	+	0	Parent=Os03t0734100-02
Chr03	irgsp1_rep	CDS	30075318	30075520	.	+	2	Parent=Os03t0734100-02
Chr03	irgsp1_rep	three_prime_UTR	30075521	30075707	.	+	.	Parent=Os03t0734100-02
Chr03	irgsp1_rep	mRNA	30076431	30077044	.	+	.	ID=Os03t0734200-01;Name=Os03t0734200-01;Locus_id=Os03g0734200;Note=Conserved hypothetical protein.;Transcript_evidence=AK106537 (DDBJ%2C Best hit),AK102957 (DDBJ%2C Best hit);ORF_evidence=B8AR28 (UniProt);NIAS_FLcDNA=002-108-C07,J033115G14;TENOR=Os03t0734200-01
Chr03	irgsp1_rep	five_prime_UTR	30076431	30076472	.	+	.	Parent=Os03t0734200-01
Chr03	irgsp1_rep	CDS	30076473	30076536	.	+	0	Parent=Os03t0734200-01
Chr03	irgsp1_rep	CDS	30076630	30076844	.	+	2	Parent=Os03t0734200-01
Chr03	irgsp1_rep	three_prime_UTR	30076845	30077044	.	+	.	Parent=Os03t0734200-01
Chr03	irgsp1_rep	mRNA	30078328	30078899	.	+	.	ID=Os03t0734300-01;Name=Os03t0734300-01;Locus_id=Os03g0734300;CGSNL Gene Name=PROTEINASE INHIBITOR I20;Oryzabase Gene Name Synonym(s)=Proteinase inhibitor I20;Note=Similar to Proteinase inhibitor type II CEVI57 precursor.;Transcript_evidence=AK105387 (DDBJ%2C Best hit);ORF_evidence=A2XLR0 (UniProt);GO=Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Proteinase inhibitor I20%2C Pin2 (IPR003465);NIAS_FLcDNA=001-121-H07;Oryzabase=23369;Expression=AK105387;TENOR=Os03t0734300-01;KEGG=Os03t0734300-01
Chr03	irgsp1_rep	five_prime_UTR	30078328	30078348	.	+	.	Parent=Os03t0734300-01
Chr03	irgsp1_rep	CDS	30078349	30078394	.	+	0	Parent=Os03t0734300-01
Chr03	irgsp1_rep	CDS	30078498	30078700	.	+	2	Parent=Os03t0734300-01
Chr03	irgsp1_rep	three_prime_UTR	30078701	30078899	.	+	.	Parent=Os03t0734300-01
Chr03	irgsp1_rep	mRNA	30080731	30081435	.	-	.	ID=Os03t0734400-01;Name=Os03t0734400-01;Locus_id=Os03g0734400;Note=Ribosomal protein L7/L12 family protein.;Transcript_evidence=AK062628 (DDBJ%2C Best hit);ORF_evidence=B6SHT7 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L7/L12%2C oligomerisation (IPR008932),Ribosomal protein L7/L12%2C C-terminal (IPR013823),Ribosomal protein L7/L12%2C C-terminal/adaptor protein ClpS-like (IPR014719),Ribosomal protein L7/L12%2C chloroplast (IPR015608);NIAS_FLcDNA=001-105-C05;Expression=AK062628;TENOR=Os03t0734400-01;KEGG=Os03t0734400-01
Chr03	irgsp1_rep	five_prime_UTR	30081381	30081435	.	-	.	Parent=Os03t0734400-01
Chr03	irgsp1_rep	CDS	30080853	30081380	.	-	0	Parent=Os03t0734400-01
Chr03	irgsp1_rep	three_prime_UTR	30080731	30080852	.	-	.	Parent=Os03t0734400-01
Chr03	irgsp1_rep	mRNA	30082333	30082953	.	-	.	ID=Os03t0734500-01;Name=Os03t0734500-01;Locus_id=Os03g0734500;Note=Conserved hypothetical protein.;Transcript_evidence=AK108001 (DDBJ%2C Best hit);ORF_evidence=A3AMF3 (UniProt);NIAS_FLcDNA=002-135-G06;Expression=AK108001;TENOR=Os03t0734500-01;KEGG=Os03t0734500-01
Chr03	irgsp1_rep	five_prime_UTR	30082830	30082953	.	-	.	Parent=Os03t0734500-01
Chr03	irgsp1_rep	CDS	30082515	30082829	.	-	0	Parent=Os03t0734500-01
Chr03	irgsp1_rep	three_prime_UTR	30082333	30082514	.	-	.	Parent=Os03t0734500-01
Chr03	irgsp1_rep	mRNA	30085469	30090107	.	-	.	ID=Os03t0734700-01;Name=Os03t0734700-01;Locus_id=Os03g0734700;Note=Mitochondrial substrate carrier family protein.;Transcript_evidence=AK072060 (DDBJ%2C Best hit),AK120533 (DDBJ%2C Best hit);ORF_evidence=B9FBN4 (UniProt);InterPro=Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J013110F19,J013128I06;Expression=AK072060;TENOR=Os03t0734700-01;KEGG=Os03t0734700-01
Chr03	irgsp1_rep	five_prime_UTR	30090046	30090107	.	-	.	Parent=Os03t0734700-01
Chr03	irgsp1_rep	CDS	30089913	30090045	.	-	0	Parent=Os03t0734700-01
Chr03	irgsp1_rep	CDS	30089744	30089823	.	-	2	Parent=Os03t0734700-01
Chr03	irgsp1_rep	CDS	30088963	30089039	.	-	0	Parent=Os03t0734700-01
Chr03	irgsp1_rep	CDS	30088630	30088723	.	-	1	Parent=Os03t0734700-01
Chr03	irgsp1_rep	CDS	30088275	30088368	.	-	0	Parent=Os03t0734700-01
Chr03	irgsp1_rep	CDS	30087887	30087960	.	-	2	Parent=Os03t0734700-01
Chr03	irgsp1_rep	CDS	30087150	30087260	.	-	0	Parent=Os03t0734700-01
Chr03	irgsp1_rep	CDS	30086632	30086704	.	-	0	Parent=Os03t0734700-01
Chr03	irgsp1_rep	CDS	30086519	30086538	.	-	2	Parent=Os03t0734700-01
Chr03	irgsp1_rep	CDS	30086373	30086440	.	-	0	Parent=Os03t0734700-01
Chr03	irgsp1_rep	CDS	30085863	30085995	.	-	1	Parent=Os03t0734700-01
Chr03	irgsp1_rep	three_prime_UTR	30085469	30085862	.	-	.	Parent=Os03t0734700-01
Chr03	irgsp1_rep	mRNA	30094435	30099093	.	-	.	ID=Os03t0734900-00;Name=Os03t0734900-00;Locus_id=Os03g0734900;CGSNL Gene Symbol=GATA19;CGSNL Gene Name=GATA TRANSCRIPTION FACTOR 19;Oryzabase Gene Symbol Synonym(s)=OsTIFY1b%2C TIFY1B%2C OsCCT15%2C OsGATA19%2C OsGATA19a%2C OsGATA19b;Oryzabase Gene Name Synonym(s)=TIFY GENE 1B%2C TIFY-DOMAIN PROTEIN 1B%2C CCT domain-containing gene 15%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 15%2C CCT domain protein 15%2C GATA transcription factor 19%2C GATA factor 19;Note=Similar to CCT motif family protein%2C expressed.;Transcript_evidence=EU958286 (DDBJ);ORF_evidence=Q10DB3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Zinc finger%2C GATA-type (IPR000679),Tify (IPR010399),CCT domain (IPR010402),Zinc finger%2C NHR/GATA-type (IPR013088);Oryzabase=15740;TENOR=Os03t0734900-00;KEGG=Os03t0734900-00
Chr03	irgsp1_rep	five_prime_UTR	30099058	30099093	.	-	.	Parent=Os03t0734900-00
Chr03	irgsp1_rep	CDS	30098884	30099057	.	-	0	Parent=Os03t0734900-00
Chr03	irgsp1_rep	CDS	30096500	30096586	.	-	0	Parent=Os03t0734900-00
Chr03	irgsp1_rep	CDS	30096300	30096415	.	-	0	Parent=Os03t0734900-00
Chr03	irgsp1_rep	CDS	30095436	30095552	.	-	1	Parent=Os03t0734900-00
Chr03	irgsp1_rep	CDS	30095221	30095326	.	-	1	Parent=Os03t0734900-00
Chr03	irgsp1_rep	CDS	30094999	30095067	.	-	0	Parent=Os03t0734900-00
Chr03	irgsp1_rep	CDS	30094848	30094921	.	-	0	Parent=Os03t0734900-00
Chr03	irgsp1_rep	CDS	30094537	30094609	.	-	1	Parent=Os03t0734900-00
Chr03	irgsp1_rep	three_prime_UTR	30094435	30094536	.	-	.	Parent=Os03t0734900-00
Chr03	irgsp1_rep	mRNA	30099372	30104572	.	-	.	ID=Os03t0735000-01;Name=Os03t0735000-01;Locus_id=Os03g0735000;RAP-DB Gene Symbol Synonym(s)=OsAGPL3%2C OsAPL1;RAP-DB Gene Name Synonym(s)=ADP-glucose pyrophosphorylase large subunit 3;CGSNL Gene Symbol=AGPL1;CGSNL Gene Name=ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1;Oryzabase Gene Symbol Synonym(s)=OsAGPL1%2C OsAPL1%2C APL1%2C OsAGPL3%2C AGPL3;Oryzabase Gene Name Synonym(s)=sativa ADP-glucose pyrophosphorylase large subunit 1%2C ADP-glucose Pyrophosphorylase large subunit 1%2C AGPase large subunit 1%2C ADP-glucose pyrophosphorylase large subunit 3%2C AGPase large unit 3;Note=Chloroplastic/amyloplastic ADP-glucose pyrophosphorylase large subunit%2C Starch synthesis in the leaf;Transcript_evidence=AK069296;ORF_evidence=Q6AVT2;GO=Biological Process: glycogen biosynthetic process (GO:0005978),Biological Process: biosynthetic process (GO:0009058),Molecular Function: glucose-1-phosphate adenylyltransferase activity (GO:0008878),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=Nucleotide-diphospho-sugar transferases (IPR029044),Trimeric LpxA-like superfamily (IPR011004),Glucose-1-phosphate adenylyltransferase (IPR011831),Nucleotidyl transferase domain (IPR005835),ADP-glucose pyrophosphorylase%2C conserved site (IPR005836);NIAS_FLcDNA=J023014K02;Manual Curation=July 16%2C 2019;Literature_PMID=17406793,DOI:10.1071/FP13105;Oryzabase=8277;Expression=AK069296;TENOR=Os03t0735000-01;KEGG=Os03t0735000-01 (EC:2.7.7.27);Subcellular location=chloroplast (GO:0009507)
Chr03	irgsp1_rep	five_prime_UTR	30104388	30104572	.	-	.	Parent=Os03t0735000-01
Chr03	irgsp1_rep	CDS	30104196	30104387	.	-	0	Parent=Os03t0735000-01
Chr03	irgsp1_rep	CDS	30103921	30104034	.	-	0	Parent=Os03t0735000-01
Chr03	irgsp1_rep	CDS	30103639	30103812	.	-	0	Parent=Os03t0735000-01
Chr03	irgsp1_rep	CDS	30103438	30103530	.	-	0	Parent=Os03t0735000-01
Chr03	irgsp1_rep	CDS	30103059	30103142	.	-	0	Parent=Os03t0735000-01
Chr03	irgsp1_rep	CDS	30102920	30102975	.	-	0	Parent=Os03t0735000-01
Chr03	irgsp1_rep	CDS	30102669	30102762	.	-	1	Parent=Os03t0735000-01
Chr03	irgsp1_rep	CDS	30102008	30102120	.	-	0	Parent=Os03t0735000-01
Chr03	irgsp1_rep	CDS	30101722	30101794	.	-	1	Parent=Os03t0735000-01
Chr03	irgsp1_rep	CDS	30101441	30101521	.	-	0	Parent=Os03t0735000-01
Chr03	irgsp1_rep	CDS	30101072	30101158	.	-	0	Parent=Os03t0735000-01
Chr03	irgsp1_rep	CDS	30100727	30100831	.	-	0	Parent=Os03t0735000-01
Chr03	irgsp1_rep	CDS	30100526	30100632	.	-	0	Parent=Os03t0735000-01
Chr03	irgsp1_rep	CDS	30100062	30100122	.	-	1	Parent=Os03t0735000-01
Chr03	irgsp1_rep	CDS	30099717	30099818	.	-	0	Parent=Os03t0735000-01
Chr03	irgsp1_rep	three_prime_UTR	30099372	30099716	.	-	.	Parent=Os03t0735000-01
Chr03	irgsp1_rep	mRNA	30099369	30100634	.	-	.	ID=Os03t0735000-02;Name=Os03t0735000-02;Locus_id=Os03g0735000;CGSNL Gene Symbol=AGPL1;CGSNL Gene Name=ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1;Oryzabase Gene Symbol Synonym(s)=OsAGPL1%2C OsAPL1%2C APL1%2C OsAGPL3%2C AGPL3;Oryzabase Gene Name Synonym(s)=sativa ADP-glucose pyrophosphorylase large subunit 1%2C ADP-glucose Pyrophosphorylase large subunit 1%2C AGPase large subunit 1%2C ADP-glucose pyrophosphorylase large subunit 3%2C AGPase large unit 3;Note=Similar to Glucose-1-phosphate adenylyltransferase.;Transcript_evidence=AK105092 (DDBJ%2C Best hit);ORF_evidence=B9FBN6 (UniProt);GO=Molecular Function: transferase activity (GO:0016740);InterPro=Trimeric LpxA-like (IPR011004);NIAS_FLcDNA=001-047-H12;Oryzabase=8277;Expression=AK105092;TENOR=Os03t0735000-02;KEGG=Os03t0735000-02 (EC:2.7.7.27)
Chr03	irgsp1_rep	five_prime_UTR	30100633	30100634	.	-	.	Parent=Os03t0735000-02
Chr03	irgsp1_rep	CDS	30100526	30100632	.	-	0	Parent=Os03t0735000-02
Chr03	irgsp1_rep	CDS	30100062	30100122	.	-	1	Parent=Os03t0735000-02
Chr03	irgsp1_rep	CDS	30099717	30099818	.	-	0	Parent=Os03t0735000-02
Chr03	irgsp1_rep	three_prime_UTR	30099369	30099716	.	-	.	Parent=Os03t0735000-02
Chr03	irgsp1_rep	mRNA	30099710	30102121	.	+	.	ID=Os03t0735025-00;Name=Os03t0735025-00;Locus_id=Os03g0735025;Note=Hypothetical gene.;Transcript_evidence=BT016847 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0735025-00;KEGG=Os03t0735025-00
Chr03	irgsp1_rep	five_prime_UTR	30099710	30099811	.	+	.	Parent=Os03t0735025-00
Chr03	irgsp1_rep	five_prime_UTR	30100051	30100053	.	+	.	Parent=Os03t0735025-00
Chr03	irgsp1_rep	CDS	30100054	30100106	.	+	0	Parent=Os03t0735025-00
Chr03	irgsp1_rep	CDS	30100509	30100631	.	+	1	Parent=Os03t0735025-00
Chr03	irgsp1_rep	CDS	30100726	30100822	.	+	1	Parent=Os03t0735025-00
Chr03	irgsp1_rep	three_prime_UTR	30100823	30100826	.	+	.	Parent=Os03t0735025-00
Chr03	irgsp1_rep	three_prime_UTR	30101060	30101154	.	+	.	Parent=Os03t0735025-00
Chr03	irgsp1_rep	three_prime_UTR	30101436	30101520	.	+	.	Parent=Os03t0735025-00
Chr03	irgsp1_rep	three_prime_UTR	30101721	30101779	.	+	.	Parent=Os03t0735025-00
Chr03	irgsp1_rep	three_prime_UTR	30101994	30102121	.	+	.	Parent=Os03t0735025-00
Chr03	irgsp1_rep	mRNA	30109911	30114827	.	+	.	ID=Os03t0735100-01;Name=Os03t0735100-01;Locus_id=Os03g0735100;Oryzabase Gene Symbol Synonym(s)=OsWD40-87;Note=Quinoprotein amine dehydrogenase%2C beta chain-like domain containing protein.;Transcript_evidence=AK241894 (DDBJ%2C Best hit);ORF_evidence=NP_567317.2 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J075009F20;Oryzabase=10768;TENOR=Os03t0735100-01;KEGG=Os03t0735100-01
Chr03	irgsp1_rep	five_prime_UTR	30109911	30110106	.	+	.	Parent=Os03t0735100-01
Chr03	irgsp1_rep	CDS	30110107	30110280	.	+	0	Parent=Os03t0735100-01
Chr03	irgsp1_rep	CDS	30110383	30110514	.	+	0	Parent=Os03t0735100-01
Chr03	irgsp1_rep	CDS	30110937	30111252	.	+	0	Parent=Os03t0735100-01
Chr03	irgsp1_rep	CDS	30111335	30111398	.	+	2	Parent=Os03t0735100-01
Chr03	irgsp1_rep	CDS	30111502	30111615	.	+	1	Parent=Os03t0735100-01
Chr03	irgsp1_rep	CDS	30111694	30111856	.	+	1	Parent=Os03t0735100-01
Chr03	irgsp1_rep	CDS	30112054	30112204	.	+	0	Parent=Os03t0735100-01
Chr03	irgsp1_rep	CDS	30112291	30112874	.	+	2	Parent=Os03t0735100-01
Chr03	irgsp1_rep	CDS	30113258	30113430	.	+	0	Parent=Os03t0735100-01
Chr03	irgsp1_rep	CDS	30113679	30113933	.	+	1	Parent=Os03t0735100-01
Chr03	irgsp1_rep	CDS	30114181	30114478	.	+	1	Parent=Os03t0735100-01
Chr03	irgsp1_rep	three_prime_UTR	30114479	30114827	.	+	.	Parent=Os03t0735100-01
Chr03	irgsp1_rep	mRNA	30109968	30114819	.	-	.	ID=Os03t0735150-00;Name=Os03t0735150-00;Locus_id=Os03g0735150;Note=Hypothetical protein.;Transcript_evidence=tplb0024f12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0735150-00
Chr03	irgsp1_rep	five_prime_UTR	30114159	30114819	.	-	.	Parent=Os03t0735150-00
Chr03	irgsp1_rep	five_prime_UTR	30113839	30113908	.	-	.	Parent=Os03t0735150-00
Chr03	irgsp1_rep	CDS	30113684	30113838	.	-	0	Parent=Os03t0735150-00
Chr03	irgsp1_rep	CDS	30113285	30113435	.	-	1	Parent=Os03t0735150-00
Chr03	irgsp1_rep	three_prime_UTR	30113275	30113284	.	-	.	Parent=Os03t0735150-00
Chr03	irgsp1_rep	three_prime_UTR	30112289	30112893	.	-	.	Parent=Os03t0735150-00
Chr03	irgsp1_rep	three_prime_UTR	30112034	30112202	.	-	.	Parent=Os03t0735150-00
Chr03	irgsp1_rep	three_prime_UTR	30111691	30111839	.	-	.	Parent=Os03t0735150-00
Chr03	irgsp1_rep	three_prime_UTR	30111500	30111612	.	-	.	Parent=Os03t0735150-00
Chr03	irgsp1_rep	three_prime_UTR	30111325	30111401	.	-	.	Parent=Os03t0735150-00
Chr03	irgsp1_rep	three_prime_UTR	30110939	30111236	.	-	.	Parent=Os03t0735150-00
Chr03	irgsp1_rep	three_prime_UTR	30110385	30110519	.	-	.	Parent=Os03t0735150-00
Chr03	irgsp1_rep	three_prime_UTR	30109968	30110277	.	-	.	Parent=Os03t0735150-00
Chr03	irgsp1_rep	mRNA	30115161	30116708	.	-	.	ID=Os03t0735200-01;Name=Os03t0735200-01;Locus_id=Os03g0735200;Note=Similar to Pentatricopeptide (PPR) repeat-containing protein.;Transcript_evidence=AK063345 (DDBJ%2C Best hit);ORF_evidence=B3VTB1 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=001-114-B07;TENOR=Os03t0735200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	30116658	30116708	.	-	.	Parent=Os03t0735200-01
Chr03	irgsp1_rep	CDS	30115650	30116657	.	-	0	Parent=Os03t0735200-01
Chr03	irgsp1_rep	three_prime_UTR	30115161	30115649	.	-	.	Parent=Os03t0735200-01
Chr03	irgsp1_rep	mRNA	30119601	30123245	.	-	.	ID=Os03t0735300-01;Name=Os03t0735300-01;Locus_id=Os03g0735300;CGSNL Gene Symbol=ALBA3;CGSNL Gene Name=ACETYLATION LOWERS BINDING AFFINITY 3;Oryzabase Gene Symbol Synonym(s)=OsAlba3%2C Alba3%2C NABP%2C OsNABP;Oryzabase Gene Name Synonym(s)=acetylation lowers binding affinity protein 3%2C acetylation lowers binding affinity 3%2C Alba family protein 3%2C nucleic acid binding protein;Note=Alba%2C DNA/RNA-binding protein family protein.;Transcript_evidence=AK071715 (DDBJ%2C Best hit);ORF_evidence=NP_187359.2 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=DNA/RNA-binding protein Alba-like (IPR002775);NIAS_FLcDNA=J023110G03;Oryzabase=22403;Expression=AK071715;TENOR=Os03t0735300-01;KEGG=Os03t0735300-01
Chr03	irgsp1_rep	five_prime_UTR	30123067	30123245	.	-	.	Parent=Os03t0735300-01
Chr03	irgsp1_rep	CDS	30122944	30123066	.	-	0	Parent=Os03t0735300-01
Chr03	irgsp1_rep	CDS	30121656	30121736	.	-	0	Parent=Os03t0735300-01
Chr03	irgsp1_rep	CDS	30121488	30121576	.	-	0	Parent=Os03t0735300-01
Chr03	irgsp1_rep	CDS	30121316	30121390	.	-	1	Parent=Os03t0735300-01
Chr03	irgsp1_rep	CDS	30121092	30121198	.	-	1	Parent=Os03t0735300-01
Chr03	irgsp1_rep	CDS	30120770	30121021	.	-	2	Parent=Os03t0735300-01
Chr03	irgsp1_rep	CDS	30120615	30120680	.	-	2	Parent=Os03t0735300-01
Chr03	irgsp1_rep	CDS	30119990	30120087	.	-	2	Parent=Os03t0735300-01
Chr03	irgsp1_rep	three_prime_UTR	30119601	30119989	.	-	.	Parent=Os03t0735300-01
Chr03	irgsp1_rep	mRNA	30119649	30121390	.	-	.	ID=Os03t0735300-02;Name=Os03t0735300-02;Locus_id=Os03g0735300;CGSNL Gene Symbol=ALBA3;CGSNL Gene Name=ACETYLATION LOWERS BINDING AFFINITY 3;Oryzabase Gene Symbol Synonym(s)=OsAlba3%2C Alba3%2C NABP%2C OsNABP;Oryzabase Gene Name Synonym(s)=acetylation lowers binding affinity protein 3%2C acetylation lowers binding affinity 3%2C Alba family protein 3%2C nucleic acid binding protein;Note=Hypothetical conserved gene.;Transcript_evidence=AK059602 (DDBJ%2C Best hit);ORF_evidence=NP_187359.2 (RefSeq);NIAS_FLcDNA=001-030-E08;Oryzabase=22403;Expression=AK059602;TENOR=Os03t0735300-02;KEGG=Os03t0735300-02
Chr03	irgsp1_rep	five_prime_UTR	30121390	30121390	.	-	.	Parent=Os03t0735300-02
Chr03	irgsp1_rep	CDS	30121316	30121389	.	-	0	Parent=Os03t0735300-02
Chr03	irgsp1_rep	CDS	30121092	30121198	.	-	1	Parent=Os03t0735300-02
Chr03	irgsp1_rep	CDS	30120770	30121021	.	-	2	Parent=Os03t0735300-02
Chr03	irgsp1_rep	CDS	30120615	30120680	.	-	2	Parent=Os03t0735300-02
Chr03	irgsp1_rep	CDS	30119990	30120087	.	-	2	Parent=Os03t0735300-02
Chr03	irgsp1_rep	three_prime_UTR	30119649	30119989	.	-	.	Parent=Os03t0735300-02
Chr03	irgsp1_rep	mRNA	30124712	30127328	.	+	.	ID=Os03t0735400-01;Name=Os03t0735400-01;Locus_id=Os03g0735400;Note=Hypothetical gene.;Transcript_evidence=AK068575 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013156N24;Expression=AK068575;TENOR=Os03t0735400-01;KEGG=Os03t0735400-01
Chr03	irgsp1_rep	five_prime_UTR	30124712	30124712	.	+	.	Parent=Os03t0735400-01
Chr03	irgsp1_rep	CDS	30124713	30125048	.	+	0	Parent=Os03t0735400-01
Chr03	irgsp1_rep	three_prime_UTR	30125049	30125117	.	+	.	Parent=Os03t0735400-01
Chr03	irgsp1_rep	three_prime_UTR	30125437	30125498	.	+	.	Parent=Os03t0735400-01
Chr03	irgsp1_rep	three_prime_UTR	30125636	30125691	.	+	.	Parent=Os03t0735400-01
Chr03	irgsp1_rep	three_prime_UTR	30125804	30127328	.	+	.	Parent=Os03t0735400-01
Chr03	irgsp1_rep	mRNA	30149905	30150520	.	-	.	ID=Os03t0735601-00;Name=Os03t0735601-00;Locus_id=Os03g0735601;Note=Hypothetical gene.;Transcript_evidence=BT084247 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0735601-00;KEGG=Os03t0735601-00
Chr03	irgsp1_rep	five_prime_UTR	30150520	30150520	.	-	.	Parent=Os03t0735601-00
Chr03	irgsp1_rep	CDS	30149905	30150519	.	-	0	Parent=Os03t0735601-00
Chr03	irgsp1_rep	mRNA	30150518	30151269	.	+	.	ID=Os03t0735800-00;Name=Os03t0735800-00;Locus_id=Os03g0735800;CGSNL Gene Symbol=CIN4;CGSNL Gene Name=CELL-WALL INVERTASE 4;Oryzabase Gene Symbol Synonym(s)=OsCIN4;Oryzabase Gene Name Synonym(s)=cell-wall invertase 4;Note=Glycosyl hydrolase family 32%2C C-terminal domain containing protein.;Transcript_evidence=AY575551 (DDBJ%2C Best hit);ORF_evidence=Q56UM8 (UniProt);InterPro=Concanavalin A-like lectin/glucanase (IPR008985),Glycosyl hydrolase family 32%2C C-terminal (IPR013189);Oryzabase=14664;TENOR=Os03t0735800-00;KEGG=Os03t0735800-00 (EC:3.2.1.26)
Chr03	irgsp1_rep	five_prime_UTR	30150518	30150519	.	+	.	Parent=Os03t0735800-00
Chr03	irgsp1_rep	CDS	30150520	30150597	.	+	0	Parent=Os03t0735800-00
Chr03	irgsp1_rep	CDS	30151050	30151238	.	+	0	Parent=Os03t0735800-00
Chr03	irgsp1_rep	three_prime_UTR	30151239	30151269	.	+	.	Parent=Os03t0735800-00
Chr03	irgsp1_rep	mRNA	30151747	30153756	.	-	.	ID=Os03t0735900-00;Name=Os03t0735900-00;Locus_id=Os03g0735900;Oryzabase Gene Symbol Synonym(s)=GPAT;Oryzabase Gene Name Synonym(s)=glycerol-3-phosphate acyltransferase;Note=Phospholipid/glycerol acyltransferase domain containing protein.;Transcript_evidence=AK354952 (DDBJ);ORF_evidence=XP_002520171.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Phospholipid/glycerol acyltransferase (IPR002123),HAD-like domain (IPR023214);Oryzabase=21984;TENOR=Os03t0735900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	30152698	30153756	.	-	0	Parent=Os03t0735900-00
Chr03	irgsp1_rep	CDS	30151748	30152284	.	-	0	Parent=Os03t0735900-00
Chr03	irgsp1_rep	three_prime_UTR	30151747	30151747	.	-	.	Parent=Os03t0735900-00
Chr03	irgsp1_rep	mRNA	30156983	30173931	.	-	.	ID=Os03t0736000-01;Name=Os03t0736000-01;Locus_id=Os03g0736000;Note=Similar to NOT2/NOT3/NOT5 family protein%2C expressed.;Transcript_evidence=AK099785 (DDBJ%2C Best hit);ORF_evidence=Q10D98 (UniProt);NIAS_FLcDNA=J013096H01;TENOR=Os03t0736000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	30173735	30173931	.	-	.	Parent=Os03t0736000-01
Chr03	irgsp1_rep	five_prime_UTR	30172845	30172900	.	-	.	Parent=Os03t0736000-01
Chr03	irgsp1_rep	CDS	30172827	30172844	.	-	0	Parent=Os03t0736000-01
Chr03	irgsp1_rep	CDS	30172146	30172254	.	-	0	Parent=Os03t0736000-01
Chr03	irgsp1_rep	CDS	30171899	30172062	.	-	2	Parent=Os03t0736000-01
Chr03	irgsp1_rep	CDS	30171416	30171773	.	-	0	Parent=Os03t0736000-01
Chr03	irgsp1_rep	CDS	30171313	30171332	.	-	2	Parent=Os03t0736000-01
Chr03	irgsp1_rep	three_prime_UTR	30170109	30171312	.	-	.	Parent=Os03t0736000-01
Chr03	irgsp1_rep	three_prime_UTR	30169942	30170043	.	-	.	Parent=Os03t0736000-01
Chr03	irgsp1_rep	three_prime_UTR	30168023	30168108	.	-	.	Parent=Os03t0736000-01
Chr03	irgsp1_rep	three_prime_UTR	30167871	30167948	.	-	.	Parent=Os03t0736000-01
Chr03	irgsp1_rep	three_prime_UTR	30167308	30167733	.	-	.	Parent=Os03t0736000-01
Chr03	irgsp1_rep	three_prime_UTR	30167068	30167120	.	-	.	Parent=Os03t0736000-01
Chr03	irgsp1_rep	three_prime_UTR	30166923	30166964	.	-	.	Parent=Os03t0736000-01
Chr03	irgsp1_rep	three_prime_UTR	30158157	30158301	.	-	.	Parent=Os03t0736000-01
Chr03	irgsp1_rep	three_prime_UTR	30157991	30158076	.	-	.	Parent=Os03t0736000-01
Chr03	irgsp1_rep	three_prime_UTR	30157815	30157901	.	-	.	Parent=Os03t0736000-01
Chr03	irgsp1_rep	three_prime_UTR	30156983	30157288	.	-	.	Parent=Os03t0736000-01
Chr03	irgsp1_rep	mRNA	30169720	30173929	.	-	.	ID=Os03t0736000-02;Name=Os03t0736000-02;Locus_id=Os03g0736000;Note=Similar to NOT2/NOT3/NOT5 family protein%2C expressed.;Transcript_evidence=AK107394 (DDBJ%2C Best hit);ORF_evidence=Q10D98 (UniProt);NIAS_FLcDNA=002-127-D03;Expression=AK107394;TENOR=Os03t0736000-02;KEGG=Os03t0736000-02
Chr03	irgsp1_rep	five_prime_UTR	30173735	30173929	.	-	.	Parent=Os03t0736000-02
Chr03	irgsp1_rep	five_prime_UTR	30172845	30172900	.	-	.	Parent=Os03t0736000-02
Chr03	irgsp1_rep	CDS	30172827	30172844	.	-	0	Parent=Os03t0736000-02
Chr03	irgsp1_rep	CDS	30172146	30172254	.	-	0	Parent=Os03t0736000-02
Chr03	irgsp1_rep	CDS	30171899	30172062	.	-	2	Parent=Os03t0736000-02
Chr03	irgsp1_rep	CDS	30171416	30171773	.	-	0	Parent=Os03t0736000-02
Chr03	irgsp1_rep	CDS	30170109	30170315	.	-	2	Parent=Os03t0736000-02
Chr03	irgsp1_rep	CDS	30169802	30170043	.	-	2	Parent=Os03t0736000-02
Chr03	irgsp1_rep	three_prime_UTR	30169720	30169801	.	-	.	Parent=Os03t0736000-02
Chr03	irgsp1_rep	mRNA	30179543	30180917	.	+	.	ID=Os03t0736200-00;Name=Os03t0736200-00;Locus_id=Os03g0736200;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=BT067236 (DDBJ);ORF_evidence=C7IVV4 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os03t0736200-00;KEGG=Os03t0736200-00
Chr03	irgsp1_rep	CDS	30179543	30180763	.	+	0	Parent=Os03t0736200-00
Chr03	irgsp1_rep	three_prime_UTR	30180764	30180917	.	+	.	Parent=Os03t0736200-00
Chr03	irgsp1_rep	mRNA	30181704	30185071	.	-	.	ID=Os03t0736300-01;Name=Os03t0736300-01;Locus_id=Os03g0736300;CGSNL Gene Symbol=GH9A3;CGSNL Gene Name=GLYCOSIDE HYDROLASE 9A3;Oryzabase Gene Symbol Synonym(s)=OsGH9A3;Oryzabase Gene Name Synonym(s)=glycoside hydrolase OsGH9A3%2C glycoside hydrolase 9A3;Note=Similar to CEL6%3DCELLULASE 6 (Fragment).;Transcript_evidence=AK070408 (DDBJ%2C Best hit);ORF_evidence=Q84R49 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 9 (IPR001701),Six-hairpin glycosidase-like (IPR008928),Six-hairpin glycosidase (IPR012341),Glycoside hydrolase%2C family 9%2C active site (IPR018221);NIAS_FLcDNA=J023054M04;Oryzabase=11700;TENOR=Os03t0736300-01
Chr03	irgsp1_rep	five_prime_UTR	30184865	30185071	.	-	.	Parent=Os03t0736300-01
Chr03	irgsp1_rep	CDS	30184489	30184864	.	-	0	Parent=Os03t0736300-01
Chr03	irgsp1_rep	CDS	30183760	30184067	.	-	2	Parent=Os03t0736300-01
Chr03	irgsp1_rep	CDS	30183151	30183615	.	-	0	Parent=Os03t0736300-01
Chr03	irgsp1_rep	CDS	30182775	30182910	.	-	0	Parent=Os03t0736300-01
Chr03	irgsp1_rep	CDS	30182525	30182697	.	-	2	Parent=Os03t0736300-01
Chr03	irgsp1_rep	CDS	30182030	30182434	.	-	0	Parent=Os03t0736300-01
Chr03	irgsp1_rep	three_prime_UTR	30181704	30182029	.	-	.	Parent=Os03t0736300-01
Chr03	irgsp1_rep	mRNA	30181713	30184647	.	-	.	ID=Os03t0736300-02;Name=Os03t0736300-02;Locus_id=Os03g0736300;CGSNL Gene Symbol=GH9A3;CGSNL Gene Name=GLYCOSIDE HYDROLASE 9A3;Oryzabase Gene Symbol Synonym(s)=OsGH9A3;Oryzabase Gene Name Synonym(s)=glycoside hydrolase OsGH9A3%2C glycoside hydrolase 9A3;Note=Similar to Endoglucanase 10.;Transcript_evidence=AK104929 (DDBJ%2C Best hit);ORF_evidence=Q84R49 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 9 (IPR001701),Six-hairpin glycosidase-like (IPR008928),Six-hairpin glycosidase (IPR012341),Glycoside hydrolase%2C family 9%2C active site (IPR018221);NIAS_FLcDNA=001-044-D09;Oryzabase=11700;TENOR=Os03t0736300-02
Chr03	irgsp1_rep	five_prime_UTR	30184646	30184647	.	-	.	Parent=Os03t0736300-02
Chr03	irgsp1_rep	CDS	30184489	30184645	.	-	0	Parent=Os03t0736300-02
Chr03	irgsp1_rep	CDS	30183760	30184067	.	-	2	Parent=Os03t0736300-02
Chr03	irgsp1_rep	CDS	30183151	30183615	.	-	0	Parent=Os03t0736300-02
Chr03	irgsp1_rep	CDS	30182775	30182910	.	-	0	Parent=Os03t0736300-02
Chr03	irgsp1_rep	CDS	30182525	30182697	.	-	2	Parent=Os03t0736300-02
Chr03	irgsp1_rep	CDS	30182030	30182434	.	-	0	Parent=Os03t0736300-02
Chr03	irgsp1_rep	three_prime_UTR	30181713	30182029	.	-	.	Parent=Os03t0736300-02
Chr03	irgsp1_rep	mRNA	30188211	30191568	.	-	.	ID=Os03t0736400-01;Name=Os03t0736400-01;Locus_id=Os03g0736400;Note=Protein of unknown function methylase putative domain containing protein.;Transcript_evidence=AK069117 (DDBJ%2C Best hit);ORF_evidence=B9FBP3 (UniProt);GO=Biological Process: rRNA methylation (GO:0031167),Molecular Function: methyltransferase activity (GO:0008168);InterPro=RNA methyltransferase%2C RsmD (IPR004398);NIAS_FLcDNA=J023007E05;Expression=AK069117;TENOR=Os03t0736400-01;KEGG=Os03t0736400-01
Chr03	irgsp1_rep	five_prime_UTR	30191534	30191568	.	-	.	Parent=Os03t0736400-01
Chr03	irgsp1_rep	CDS	30191306	30191533	.	-	0	Parent=Os03t0736400-01
Chr03	irgsp1_rep	CDS	30191106	30191213	.	-	0	Parent=Os03t0736400-01
Chr03	irgsp1_rep	CDS	30190548	30190652	.	-	0	Parent=Os03t0736400-01
Chr03	irgsp1_rep	CDS	30190342	30190446	.	-	0	Parent=Os03t0736400-01
Chr03	irgsp1_rep	CDS	30189788	30189926	.	-	0	Parent=Os03t0736400-01
Chr03	irgsp1_rep	CDS	30189117	30189232	.	-	2	Parent=Os03t0736400-01
Chr03	irgsp1_rep	CDS	30188984	30189040	.	-	0	Parent=Os03t0736400-01
Chr03	irgsp1_rep	CDS	30188796	30188873	.	-	0	Parent=Os03t0736400-01
Chr03	irgsp1_rep	three_prime_UTR	30188788	30188795	.	-	.	Parent=Os03t0736400-01
Chr03	irgsp1_rep	three_prime_UTR	30188211	30188692	.	-	.	Parent=Os03t0736400-01
Chr03	irgsp1_rep	mRNA	30188211	30191567	.	-	.	ID=Os03t0736400-02;Name=Os03t0736400-02;Locus_id=Os03g0736400;Note=Protein of unknown function methylase putative domain containing protein.;Transcript_evidence=AK105812 (DDBJ%2C Best hit);ORF_evidence=B9FBP3 (UniProt);GO=Biological Process: rRNA methylation (GO:0031167),Molecular Function: methyltransferase activity (GO:0008168);InterPro=RNA methyltransferase%2C RsmD (IPR004398);NIAS_FLcDNA=001-203-C03;Expression=AK105812;TENOR=Os03t0736400-02;KEGG=Os03t0736400-02
Chr03	irgsp1_rep	five_prime_UTR	30191534	30191567	.	-	.	Parent=Os03t0736400-02
Chr03	irgsp1_rep	CDS	30191306	30191533	.	-	0	Parent=Os03t0736400-02
Chr03	irgsp1_rep	CDS	30191106	30191213	.	-	0	Parent=Os03t0736400-02
Chr03	irgsp1_rep	CDS	30190548	30190652	.	-	0	Parent=Os03t0736400-02
Chr03	irgsp1_rep	CDS	30190342	30190446	.	-	0	Parent=Os03t0736400-02
Chr03	irgsp1_rep	CDS	30189788	30189926	.	-	0	Parent=Os03t0736400-02
Chr03	irgsp1_rep	CDS	30189117	30189232	.	-	2	Parent=Os03t0736400-02
Chr03	irgsp1_rep	CDS	30188984	30189040	.	-	0	Parent=Os03t0736400-02
Chr03	irgsp1_rep	CDS	30188796	30188873	.	-	0	Parent=Os03t0736400-02
Chr03	irgsp1_rep	three_prime_UTR	30188774	30188795	.	-	.	Parent=Os03t0736400-02
Chr03	irgsp1_rep	three_prime_UTR	30188211	30188691	.	-	.	Parent=Os03t0736400-02
Chr03	irgsp1_rep	mRNA	30192888	30194132	.	+	.	ID=Os03t0736500-01;Name=Os03t0736500-01;Locus_id=Os03g0736500;Oryzabase Gene Symbol Synonym(s)=KN%2C OsKN%2C OsSYP111%2C SYP111;Oryzabase Gene Name Synonym(s)=Syntaxin-related protein KNOLLE%2C OsKNOLLE%2C KNOLLE%2C Syntaxin of Plants 111;Note=Syntaxin-related protein KNOLLE (Syntaxin 111) (AtSYP111).;Transcript_evidence=AK287828 (DDBJ%2C Best hit);ORF_evidence=NP_001149999.1 (RefSeq);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: membrane (GO:0016020),Molecular Function: SNAP receptor activity (GO:0005484),Molecular Function: protein binding (GO:0005515);InterPro=Target SNARE coiled-coil domain (IPR000727),Syntaxin%2C N-terminal (IPR006011),Syntaxin/epimorphin%2C conserved site (IPR006012),t-SNARE (IPR010989);NIAS_FLcDNA=J065185H22;Oryzabase=11823;TENOR=Os03t0736500-01;KEGG=Os03t0736500-01
Chr03	irgsp1_rep	five_prime_UTR	30192888	30192988	.	+	.	Parent=Os03t0736500-01
Chr03	irgsp1_rep	CDS	30192989	30193924	.	+	0	Parent=Os03t0736500-01
Chr03	irgsp1_rep	three_prime_UTR	30193925	30194132	.	+	.	Parent=Os03t0736500-01
Chr03	irgsp1_rep	mRNA	30197329	30198770	.	+	.	ID=Os03t0736600-01;Name=Os03t0736600-01;Locus_id=Os03g0736600;Note=Similar to ATP synthase.;Transcript_evidence=AK060375 (DDBJ%2C Best hit);ORF_evidence=B6TZM0 (UniProt);GO=Biological Process: ATP synthesis coupled proton transport (GO:0015986),Molecular Function: hydrogen ion transporting ATP synthase activity%2C rotational mechanism (GO:0046933);InterPro=ATPase%2C F1 complex%2C OSCP/delta subunit (IPR000711);NIAS_FLcDNA=001-009-C11;TENOR=Os03t0736600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	30197329	30197429	.	+	.	Parent=Os03t0736600-01
Chr03	irgsp1_rep	five_prime_UTR	30197678	30197681	.	+	.	Parent=Os03t0736600-01
Chr03	irgsp1_rep	CDS	30197682	30198311	.	+	0	Parent=Os03t0736600-01
Chr03	irgsp1_rep	three_prime_UTR	30198312	30198770	.	+	.	Parent=Os03t0736600-01
Chr03	irgsp1_rep	mRNA	30198894	30200355	.	-	.	ID=Os03t0736700-01;Name=Os03t0736700-01;Locus_id=Os03g0736700;Note=GRAM domain containing protein.;Transcript_evidence=AK104415 (DDBJ%2C Best hit),AK060947 (DDBJ%2C Best hit);ORF_evidence=B6TYF4 (UniProt);InterPro=GRAM (IPR004182);NIAS_FLcDNA=006-204-F03,006-201-F03;Expression=AK104415;TENOR=Os03t0736700-01;KEGG=Os03t0736700-01
Chr03	irgsp1_rep	five_prime_UTR	30200132	30200355	.	-	.	Parent=Os03t0736700-01
Chr03	irgsp1_rep	CDS	30199954	30200131	.	-	0	Parent=Os03t0736700-01
Chr03	irgsp1_rep	CDS	30199749	30199838	.	-	2	Parent=Os03t0736700-01
Chr03	irgsp1_rep	CDS	30199375	30199674	.	-	2	Parent=Os03t0736700-01
Chr03	irgsp1_rep	CDS	30199100	30199275	.	-	2	Parent=Os03t0736700-01
Chr03	irgsp1_rep	three_prime_UTR	30198894	30199099	.	-	.	Parent=Os03t0736700-01
Chr03	irgsp1_rep	mRNA	30198812	30200309	.	-	.	ID=Os03t0736700-03;Name=Os03t0736700-03;Locus_id=Os03g0736700;Note=GRAM domain containing protein.;Transcript_evidence=AK073026 (DDBJ%2C Best hit),AK104642 (DDBJ%2C Best hit);ORF_evidence=B6TYF4 (UniProt);InterPro=GRAM (IPR004182);NIAS_FLcDNA=J023144G12,006-310-F11;Expression=AK073026;TENOR=Os03t0736700-03;KEGG=Os03t0736700-03
Chr03	irgsp1_rep	five_prime_UTR	30200132	30200309	.	-	.	Parent=Os03t0736700-03
Chr03	irgsp1_rep	CDS	30199954	30200131	.	-	0	Parent=Os03t0736700-03
Chr03	irgsp1_rep	CDS	30199749	30199838	.	-	2	Parent=Os03t0736700-03
Chr03	irgsp1_rep	CDS	30199375	30199674	.	-	2	Parent=Os03t0736700-03
Chr03	irgsp1_rep	CDS	30199100	30199275	.	-	2	Parent=Os03t0736700-03
Chr03	irgsp1_rep	three_prime_UTR	30198812	30199099	.	-	.	Parent=Os03t0736700-03
Chr03	irgsp1_rep	mRNA	30198832	30199197	.	-	.	ID=Os03t0736700-05;Name=Os03t0736700-05;Locus_id=Os03g0736700;Note=Similar to FIP1.;Transcript_evidence=AK060219 (DDBJ%2C Best hit);ORF_evidence=B6SJ74 (UniProt);NIAS_FLcDNA=001-002-E07;TENOR=Os03t0736700-05;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	30199196	30199197	.	-	.	Parent=Os03t0736700-05
Chr03	irgsp1_rep	CDS	30199100	30199195	.	-	0	Parent=Os03t0736700-05
Chr03	irgsp1_rep	three_prime_UTR	30198832	30199099	.	-	.	Parent=Os03t0736700-05
Chr03	irgsp1_rep	mRNA	30204128	30204899	.	+	.	ID=Os03t0736900-01;Name=Os03t0736900-01;Locus_id=Os03g0736900;Note=Similar to Sorghum bicolor protein targeted either to mitochondria or chloroplast proteins T50848.;Transcript_evidence=AK068443 (DDBJ%2C Best hit);ORF_evidence=C7IVU8 (UniProt);NIAS_FLcDNA=J013153J23;Expression=AK068443;TENOR=Os03t0736900-01;KEGG=Os03t0736900-01
Chr03	irgsp1_rep	CDS	30204128	30204607	.	+	0	Parent=Os03t0736900-01
Chr03	irgsp1_rep	three_prime_UTR	30204608	30204899	.	+	.	Parent=Os03t0736900-01
Chr03	irgsp1_rep	mRNA	30206531	30210436	.	-	.	ID=Os03t0737000-01;Name=Os03t0737000-01;Locus_id=Os03g0737000;Oryzabase Gene Symbol Synonym(s)=OsCBSX4%2C OsCBSX4a%2C OsCBSX4b%2C OsCBSX4c%2C OsCBSX4d%2C OsCBSX4e%2C OsCBSX4f;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSX4%2C CBS domain containing protein OsCBSX4;Note=Cystathionine beta-synthase%2C core domain containing protein.;Transcript_evidence=AK061742 (DDBJ%2C Best hit);ORF_evidence=Q10D87 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein binding (GO:0005515);InterPro=Cystathionine beta-synthase%2C core (IPR000644),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=001-038-F01;Oryzabase=10321;Expression=AK061742;TENOR=Os03t0737000-01;KEGG=Os03t0737000-01
Chr03	irgsp1_rep	five_prime_UTR	30210292	30210436	.	-	.	Parent=Os03t0737000-01
Chr03	irgsp1_rep	five_prime_UTR	30208243	30208243	.	-	.	Parent=Os03t0737000-01
Chr03	irgsp1_rep	CDS	30207985	30208242	.	-	0	Parent=Os03t0737000-01
Chr03	irgsp1_rep	CDS	30207827	30207908	.	-	0	Parent=Os03t0737000-01
Chr03	irgsp1_rep	CDS	30207381	30207454	.	-	2	Parent=Os03t0737000-01
Chr03	irgsp1_rep	CDS	30207071	30207131	.	-	0	Parent=Os03t0737000-01
Chr03	irgsp1_rep	CDS	30206834	30206976	.	-	2	Parent=Os03t0737000-01
Chr03	irgsp1_rep	three_prime_UTR	30206531	30206833	.	-	.	Parent=Os03t0737000-01
Chr03	irgsp1_rep	mRNA	30208793	30210379	.	-	.	ID=Os03t0737000-02;Name=Os03t0737000-02;Locus_id=Os03g0737000;Oryzabase Gene Symbol Synonym(s)=OsCBSX4%2C OsCBSX4a%2C OsCBSX4b%2C OsCBSX4c%2C OsCBSX4d%2C OsCBSX4e%2C OsCBSX4f;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSX4%2C CBS domain containing protein OsCBSX4;Note=Hypothetical gene.;Transcript_evidence=AK100865 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023124A15;Oryzabase=10321;Expression=AK100865;TENOR=Os03t0737000-02;KEGG=Os03t0737000-02
Chr03	irgsp1_rep	five_prime_UTR	30209796	30210379	.	-	.	Parent=Os03t0737000-02
Chr03	irgsp1_rep	CDS	30209580	30209795	.	-	0	Parent=Os03t0737000-02
Chr03	irgsp1_rep	three_prime_UTR	30208793	30209579	.	-	.	Parent=Os03t0737000-02
Chr03	irgsp1_rep	mRNA	30206423	30210377	.	-	.	ID=Os03t0737000-03;Name=Os03t0737000-03;Locus_id=Os03g0737000;Oryzabase Gene Symbol Synonym(s)=OsCBSX4%2C OsCBSX4a%2C OsCBSX4b%2C OsCBSX4c%2C OsCBSX4d%2C OsCBSX4e%2C OsCBSX4f;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSX4%2C CBS domain containing protein OsCBSX4;Note=Similar to CBS domain containing protein%2C expressed.;Transcript_evidence=AK068510 (DDBJ%2C Best hit);ORF_evidence=Q10D87 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein binding (GO:0005515);InterPro=Cystathionine beta-synthase%2C core (IPR000644),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J013152K18;Oryzabase=10321;TENOR=Os03t0737000-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	30208249	30210377	.	-	.	Parent=Os03t0737000-03
Chr03	irgsp1_rep	CDS	30207985	30208248	.	-	0	Parent=Os03t0737000-03
Chr03	irgsp1_rep	CDS	30207827	30207908	.	-	0	Parent=Os03t0737000-03
Chr03	irgsp1_rep	CDS	30207381	30207454	.	-	2	Parent=Os03t0737000-03
Chr03	irgsp1_rep	CDS	30207071	30207131	.	-	0	Parent=Os03t0737000-03
Chr03	irgsp1_rep	CDS	30206834	30206976	.	-	2	Parent=Os03t0737000-03
Chr03	irgsp1_rep	three_prime_UTR	30206423	30206833	.	-	.	Parent=Os03t0737000-03
Chr03	irgsp1_rep	mRNA	30215575	30223323	.	-	.	ID=Os03t0737200-01;Name=Os03t0737200-01;Locus_id=Os03g0737200;RAP-DB Gene Symbol Synonym(s)=OsHOS1;RAP-DB Gene Name Synonym(s)=high expression of osmotically responsive gene 1;Oryzabase Gene Symbol Synonym(s)=OsHOS1%2C HOS1;Oryzabase Gene Name Synonym(s)=high expression of osmotically responsive gene 1%2C HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1%2C HIGH OSMOTICALLY RESPONSIVE GENE 1;Note=E3-ubiquitin ligase%2C Modulation of the cold stress response;Transcript_evidence=JQ866627;ORF_evidence=I3QK18;InterPro=ELYS-like domain (IPR025151);Manual Curation=September 28%2C 2015;Literature_PMID=23780733;Oryzabase=13466;TENOR=Os03t0737200-00
Chr03	irgsp1_rep	five_prime_UTR	30223264	30223323	.	-	.	Parent=Os03t0737200-01
Chr03	irgsp1_rep	CDS	30223255	30223263	.	-	0	Parent=Os03t0737200-01
Chr03	irgsp1_rep	CDS	30222037	30222427	.	-	0	Parent=Os03t0737200-01
Chr03	irgsp1_rep	CDS	30221794	30221928	.	-	2	Parent=Os03t0737200-01
Chr03	irgsp1_rep	CDS	30221129	30221304	.	-	2	Parent=Os03t0737200-01
Chr03	irgsp1_rep	CDS	30220075	30220482	.	-	0	Parent=Os03t0737200-01
Chr03	irgsp1_rep	CDS	30219819	30219977	.	-	0	Parent=Os03t0737200-01
Chr03	irgsp1_rep	CDS	30218397	30218909	.	-	0	Parent=Os03t0737200-01
Chr03	irgsp1_rep	CDS	30217644	30217775	.	-	0	Parent=Os03t0737200-01
Chr03	irgsp1_rep	CDS	30216599	30217338	.	-	0	Parent=Os03t0737200-01
Chr03	irgsp1_rep	CDS	30215684	30215849	.	-	1	Parent=Os03t0737200-01
Chr03	irgsp1_rep	three_prime_UTR	30215575	30215683	.	-	.	Parent=Os03t0737200-01
Chr03	irgsp1_rep	mRNA	30224194	30226344	.	-	.	ID=Os03t0737300-01;Name=Os03t0737300-01;Locus_id=Os03g0737300;Oryzabase Gene Name Synonym(s)=HAD-superfamily phosphatase subfamily IIIC;Note=HAD-superfamily phosphatase%2C subfamily IIIC domain containing protein.;Transcript_evidence=AK071016 (DDBJ%2C Best hit);ORF_evidence=B6TR45 (UniProt);GO=Molecular Function: phosphatase activity (GO:0016791);InterPro=HAD-superfamily phosphatase%2C subfamily IIIC (IPR010033),Magnesium-dependent phosphatase-1%2C eukaryotic/arcaheal type (IPR010036),HAD-like domain (IPR023214),Magnesium-dependent phosphatase-1%2C eukaryotic type (IPR024734);NIAS_FLcDNA=J023081E04;Oryzabase=23374;Expression=AK071016;TENOR=Os03t0737300-01;KEGG=Os03t0737300-01
Chr03	irgsp1_rep	five_prime_UTR	30226248	30226344	.	-	.	Parent=Os03t0737300-01
Chr03	irgsp1_rep	CDS	30226138	30226247	.	-	0	Parent=Os03t0737300-01
Chr03	irgsp1_rep	CDS	30225846	30226017	.	-	1	Parent=Os03t0737300-01
Chr03	irgsp1_rep	CDS	30225162	30225278	.	-	0	Parent=Os03t0737300-01
Chr03	irgsp1_rep	CDS	30224295	30224441	.	-	0	Parent=Os03t0737300-01
Chr03	irgsp1_rep	three_prime_UTR	30224194	30224294	.	-	.	Parent=Os03t0737300-01
Chr03	irgsp1_rep	mRNA	30228262	30230172	.	-	.	ID=Os03t0737400-01;Name=Os03t0737400-01;Locus_id=Os03g0737400;Note=HAD-superfamily phosphatase%2C subfamily IIIC domain containing protein.;Transcript_evidence=AK063722 (DDBJ%2C Best hit);ORF_evidence=B6TR45 (UniProt);GO=Molecular Function: phosphatase activity (GO:0016791);InterPro=HAD-superfamily phosphatase%2C subfamily IIIC (IPR010033),Magnesium-dependent phosphatase-1%2C eukaryotic/arcaheal type (IPR010036),HAD-like domain (IPR023214),Magnesium-dependent phosphatase-1%2C eukaryotic type (IPR024734);NIAS_FLcDNA=001-120-D02;Expression=AK063722;TENOR=Os03t0737400-01;KEGG=Os03t0737400-01
Chr03	irgsp1_rep	five_prime_UTR	30230098	30230172	.	-	.	Parent=Os03t0737400-01
Chr03	irgsp1_rep	CDS	30229988	30230097	.	-	0	Parent=Os03t0737400-01
Chr03	irgsp1_rep	CDS	30229696	30229867	.	-	1	Parent=Os03t0737400-01
Chr03	irgsp1_rep	CDS	30229171	30229287	.	-	0	Parent=Os03t0737400-01
Chr03	irgsp1_rep	CDS	30228511	30228633	.	-	0	Parent=Os03t0737400-01
Chr03	irgsp1_rep	three_prime_UTR	30228262	30228510	.	-	.	Parent=Os03t0737400-01
Chr03	irgsp1_rep	mRNA	30235894	30241190	.	+	.	ID=Os03t0737600-01;Name=Os03t0737600-01;Locus_id=Os03g0737600;CGSNL Gene Symbol=CYCH%3B1;CGSNL Gene Name=CYCLIN-H-1;Oryzabase Gene Symbol Synonym(s)=Os%3BcycH%3B1%2C Orasa%3BCycH1%3B1%2C cycH1%2C CYCH1;Oryzabase Gene Name Synonym(s)=cyclin H homolog 1%2C cyclin H1%2C H-type cyclin 1%2C cyclin H-1%2C CYCLIN H-1;Note=Cyclin H-1.;Transcript_evidence=AK101854 (DDBJ%2C Best hit),AK105468 (DDBJ%2C Best hit);ORF_evidence=Q10D80 (UniProt);GO=Biological Process: regulation of cyclin-dependent protein kinase activity (GO:0000079),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: holo TFIIH complex (GO:0005675),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763),Cyclin C/H/T/L (IPR015429),Cyclin H (IPR015432);NIAS_FLcDNA=J033069N12,001-126-A06;Oryzabase=8986;TENOR=Os03t0737600-01
Chr03	irgsp1_rep	five_prime_UTR	30235894	30236146	.	+	.	Parent=Os03t0737600-01
Chr03	irgsp1_rep	CDS	30236147	30236206	.	+	0	Parent=Os03t0737600-01
Chr03	irgsp1_rep	CDS	30236316	30236366	.	+	0	Parent=Os03t0737600-01
Chr03	irgsp1_rep	CDS	30236462	30236534	.	+	0	Parent=Os03t0737600-01
Chr03	irgsp1_rep	CDS	30236766	30236884	.	+	2	Parent=Os03t0737600-01
Chr03	irgsp1_rep	CDS	30236967	30237040	.	+	0	Parent=Os03t0737600-01
Chr03	irgsp1_rep	CDS	30237232	30237352	.	+	1	Parent=Os03t0737600-01
Chr03	irgsp1_rep	CDS	30237433	30237501	.	+	0	Parent=Os03t0737600-01
Chr03	irgsp1_rep	CDS	30237666	30237707	.	+	0	Parent=Os03t0737600-01
Chr03	irgsp1_rep	CDS	30238526	30238603	.	+	0	Parent=Os03t0737600-01
Chr03	irgsp1_rep	CDS	30239575	30239633	.	+	0	Parent=Os03t0737600-01
Chr03	irgsp1_rep	CDS	30239711	30239795	.	+	1	Parent=Os03t0737600-01
Chr03	irgsp1_rep	CDS	30240094	30240182	.	+	0	Parent=Os03t0737600-01
Chr03	irgsp1_rep	CDS	30240272	30240334	.	+	1	Parent=Os03t0737600-01
Chr03	irgsp1_rep	CDS	30240410	30240419	.	+	1	Parent=Os03t0737600-01
Chr03	irgsp1_rep	three_prime_UTR	30240420	30240472	.	+	.	Parent=Os03t0737600-01
Chr03	irgsp1_rep	three_prime_UTR	30240560	30241190	.	+	.	Parent=Os03t0737600-01
Chr03	irgsp1_rep	mRNA	30244288	30247224	.	+	.	ID=Os03t0737700-01;Name=Os03t0737700-01;Locus_id=Os03g0737700;Note=Hypothetical conserved gene.;Transcript_evidence=AK243444 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100068L08;TENOR=Os03t0737700-01
Chr03	irgsp1_rep	five_prime_UTR	30244288	30244651	.	+	.	Parent=Os03t0737700-01
Chr03	irgsp1_rep	CDS	30244652	30244699	.	+	0	Parent=Os03t0737700-01
Chr03	irgsp1_rep	CDS	30246108	30247224	.	+	0	Parent=Os03t0737700-01
Chr03	irgsp1_rep	mRNA	30244172	30247380	.	-	.	ID=Os03t0737701-01;Name=Os03t0737701-01;Locus_id=Os03g0737701;RAP-DB Gene Symbol Synonym(s)=OsMIK%2C LPA;RAP-DB Gene Name Synonym(s)=myo-inositol kinase%2C low phytic acid;Oryzabase Gene Symbol Synonym(s)=OsMIK%2C LPA;Oryzabase Gene Name Synonym(s)=myo-inositol kinase%2C low phytic acid;Note=Myo-inositol kinase%2C Phytic acid (PA) biosynthesis;Transcript_evidence=EU366952 (cds),Inferred from literature;ORF_evidence=Q84R36;GO=Biological Process: myo-inositol hexakisphosphate biosynthetic process (GO:0010264),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773),Molecular Function: inositol 3-kinase activity (GO:0019140);InterPro=Inositol 3-kinase (IPR031094),Ribokinase-like (IPR029056),Carbohydrate kinase PfkB (IPR011611),Carbohydrate/puine kinase%2C PfkB%2C conserved site (IPR002173);Manual Curation=December 16%2C 2016;Literature_PMID=18726583;Oryzabase=14702;TENOR=Os03t0737701-00;KEGG=Os03t0737701-00
Chr03	irgsp1_rep	five_prime_UTR	30247086	30247380	.	-	.	Parent=Os03t0737701-01
Chr03	irgsp1_rep	CDS	30246108	30247085	.	-	0	Parent=Os03t0737701-01
Chr03	irgsp1_rep	CDS	30244484	30244699	.	-	0	Parent=Os03t0737701-01
Chr03	irgsp1_rep	three_prime_UTR	30244172	30244483	.	-	.	Parent=Os03t0737701-01
Chr03	irgsp1_rep	mRNA	30248863	30258576	.	+	.	ID=Os03t0737800-01;Name=Os03t0737800-01;Locus_id=Os03g0737800;Note=Vps51/Vps67 domain containing protein.;Transcript_evidence=AK103066 (DDBJ%2C Best hit);ORF_evidence=Q84R33 (UniProt);InterPro=Vacuolar protein sorting-associated protein 51 (IPR014812);NIAS_FLcDNA=J033117P10;Expression=AK103066;TENOR=Os03t0737800-01;KEGG=Os03t0737800-01
Chr03	irgsp1_rep	CDS	30248863	30248971	.	+	0	Parent=Os03t0737800-01
Chr03	irgsp1_rep	CDS	30249088	30249176	.	+	2	Parent=Os03t0737800-01
Chr03	irgsp1_rep	CDS	30249924	30250063	.	+	0	Parent=Os03t0737800-01
Chr03	irgsp1_rep	CDS	30250170	30250224	.	+	1	Parent=Os03t0737800-01
Chr03	irgsp1_rep	CDS	30250307	30250414	.	+	0	Parent=Os03t0737800-01
Chr03	irgsp1_rep	CDS	30251078	30251176	.	+	0	Parent=Os03t0737800-01
Chr03	irgsp1_rep	CDS	30251268	30251345	.	+	0	Parent=Os03t0737800-01
Chr03	irgsp1_rep	CDS	30251446	30251523	.	+	0	Parent=Os03t0737800-01
Chr03	irgsp1_rep	CDS	30252763	30252837	.	+	0	Parent=Os03t0737800-01
Chr03	irgsp1_rep	CDS	30253005	30253105	.	+	0	Parent=Os03t0737800-01
Chr03	irgsp1_rep	CDS	30253795	30253862	.	+	1	Parent=Os03t0737800-01
Chr03	irgsp1_rep	CDS	30254112	30254185	.	+	2	Parent=Os03t0737800-01
Chr03	irgsp1_rep	CDS	30254736	30254802	.	+	0	Parent=Os03t0737800-01
Chr03	irgsp1_rep	CDS	30254996	30255111	.	+	2	Parent=Os03t0737800-01
Chr03	irgsp1_rep	CDS	30255249	30255506	.	+	0	Parent=Os03t0737800-01
Chr03	irgsp1_rep	CDS	30255604	30255720	.	+	0	Parent=Os03t0737800-01
Chr03	irgsp1_rep	CDS	30256352	30256423	.	+	0	Parent=Os03t0737800-01
Chr03	irgsp1_rep	CDS	30256537	30256587	.	+	0	Parent=Os03t0737800-01
Chr03	irgsp1_rep	CDS	30256747	30256974	.	+	0	Parent=Os03t0737800-01
Chr03	irgsp1_rep	CDS	30257711	30257887	.	+	0	Parent=Os03t0737800-01
Chr03	irgsp1_rep	CDS	30258186	30258305	.	+	0	Parent=Os03t0737800-01
Chr03	irgsp1_rep	three_prime_UTR	30258306	30258576	.	+	.	Parent=Os03t0737800-01
Chr03	irgsp1_rep	mRNA	30258869	30262234	.	-	.	ID=Os03t0737900-01;Name=Os03t0737900-01;Locus_id=Os03g0737900;Note=Similar to predicted protein.;Transcript_evidence=AK242884 (DDBJ%2C Best hit);ORF_evidence=Q84R31 (UniProt);NIAS_FLcDNA=J090079F16;TENOR=Os03t0737900-01;KEGG=Os03t0737900-01
Chr03	irgsp1_rep	five_prime_UTR	30262138	30262234	.	-	.	Parent=Os03t0737900-01
Chr03	irgsp1_rep	CDS	30262006	30262137	.	-	0	Parent=Os03t0737900-01
Chr03	irgsp1_rep	CDS	30261723	30261909	.	-	0	Parent=Os03t0737900-01
Chr03	irgsp1_rep	CDS	30261364	30261460	.	-	2	Parent=Os03t0737900-01
Chr03	irgsp1_rep	CDS	30260863	30260953	.	-	1	Parent=Os03t0737900-01
Chr03	irgsp1_rep	CDS	30260590	30260790	.	-	0	Parent=Os03t0737900-01
Chr03	irgsp1_rep	CDS	30260249	30260505	.	-	0	Parent=Os03t0737900-01
Chr03	irgsp1_rep	CDS	30259734	30259824	.	-	1	Parent=Os03t0737900-01
Chr03	irgsp1_rep	CDS	30259437	30259650	.	-	0	Parent=Os03t0737900-01
Chr03	irgsp1_rep	CDS	30259141	30259355	.	-	2	Parent=Os03t0737900-01
Chr03	irgsp1_rep	three_prime_UTR	30258869	30259140	.	-	.	Parent=Os03t0737900-01
Chr03	irgsp1_rep	mRNA	30262450	30266035	.	+	.	ID=Os03t0738000-01;Name=Os03t0738000-01;Locus_id=Os03g0738000;Oryzabase Gene Symbol Synonym(s)=OsWD40-88;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK112083 (DDBJ%2C Best hit);ORF_evidence=Q10D72 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781);NIAS_FLcDNA=001-125-E06;Oryzabase=10769;Expression=AK112083;TENOR=Os03t0738000-01;KEGG=Os03t0738000-01
Chr03	irgsp1_rep	five_prime_UTR	30262450	30262450	.	+	.	Parent=Os03t0738000-01
Chr03	irgsp1_rep	CDS	30262451	30262501	.	+	0	Parent=Os03t0738000-01
Chr03	irgsp1_rep	CDS	30262578	30262771	.	+	0	Parent=Os03t0738000-01
Chr03	irgsp1_rep	CDS	30262883	30262944	.	+	1	Parent=Os03t0738000-01
Chr03	irgsp1_rep	CDS	30263084	30263164	.	+	2	Parent=Os03t0738000-01
Chr03	irgsp1_rep	CDS	30263279	30263352	.	+	2	Parent=Os03t0738000-01
Chr03	irgsp1_rep	CDS	30263435	30263517	.	+	0	Parent=Os03t0738000-01
Chr03	irgsp1_rep	CDS	30263932	30264035	.	+	1	Parent=Os03t0738000-01
Chr03	irgsp1_rep	CDS	30264414	30264553	.	+	2	Parent=Os03t0738000-01
Chr03	irgsp1_rep	CDS	30264624	30264671	.	+	0	Parent=Os03t0738000-01
Chr03	irgsp1_rep	CDS	30264827	30264879	.	+	0	Parent=Os03t0738000-01
Chr03	irgsp1_rep	CDS	30265066	30265150	.	+	1	Parent=Os03t0738000-01
Chr03	irgsp1_rep	CDS	30265234	30265300	.	+	0	Parent=Os03t0738000-01
Chr03	irgsp1_rep	CDS	30265384	30265494	.	+	2	Parent=Os03t0738000-01
Chr03	irgsp1_rep	CDS	30265588	30265640	.	+	2	Parent=Os03t0738000-01
Chr03	irgsp1_rep	three_prime_UTR	30265641	30266035	.	+	.	Parent=Os03t0738000-01
Chr03	irgsp1_rep	mRNA	30262459	30265698	.	-	.	ID=Os03t0738101-00;Name=Os03t0738101-00;Locus_id=Os03g0738101;Note=Hypothetical protein.;Transcript_evidence=tplb0042i10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0738101-00
Chr03	irgsp1_rep	five_prime_UTR	30265582	30265698	.	-	.	Parent=Os03t0738101-00
Chr03	irgsp1_rep	five_prime_UTR	30265388	30265491	.	-	.	Parent=Os03t0738101-00
Chr03	irgsp1_rep	five_prime_UTR	30265247	30265297	.	-	.	Parent=Os03t0738101-00
Chr03	irgsp1_rep	five_prime_UTR	30265090	30265160	.	-	.	Parent=Os03t0738101-00
Chr03	irgsp1_rep	five_prime_UTR	30264836	30264899	.	-	.	Parent=Os03t0738101-00
Chr03	irgsp1_rep	five_prime_UTR	30264607	30264681	.	-	.	Parent=Os03t0738101-00
Chr03	irgsp1_rep	five_prime_UTR	30264412	30264535	.	-	.	Parent=Os03t0738101-00
Chr03	irgsp1_rep	five_prime_UTR	30263951	30264032	.	-	.	Parent=Os03t0738101-00
Chr03	irgsp1_rep	five_prime_UTR	30263433	30263537	.	-	.	Parent=Os03t0738101-00
Chr03	irgsp1_rep	five_prime_UTR	30263320	30263350	.	-	.	Parent=Os03t0738101-00
Chr03	irgsp1_rep	CDS	30263272	30263319	.	-	0	Parent=Os03t0738101-00
Chr03	irgsp1_rep	CDS	30263082	30263155	.	-	0	Parent=Os03t0738101-00
Chr03	irgsp1_rep	CDS	30262874	30262942	.	-	1	Parent=Os03t0738101-00
Chr03	irgsp1_rep	CDS	30262732	30262762	.	-	1	Parent=Os03t0738101-00
Chr03	irgsp1_rep	three_prime_UTR	30262459	30262731	.	-	.	Parent=Os03t0738101-00
Chr03	irgsp1_rep	mRNA	30294356	30295606	.	+	.	ID=Os03t0738200-00;Name=Os03t0738200-00;Locus_id=Os03g0738200;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7Y1E9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=PIK-related kinase%2C FATC (IPR003152);TENOR=Os03t0738200-00;KEGG=Os03t0738200-00
Chr03	irgsp1_rep	CDS	30294356	30294863	.	+	0	Parent=Os03t0738200-00
Chr03	irgsp1_rep	CDS	30295353	30295428	.	+	2	Parent=Os03t0738200-00
Chr03	irgsp1_rep	CDS	30295507	30295606	.	+	1	Parent=Os03t0738200-00
Chr03	irgsp1_rep	mRNA	30296415	30298281	.	+	.	ID=Os03t0738300-01;Name=Os03t0738300-01;Locus_id=Os03g0738300;Note=Hypothetical protein.;Transcript_evidence=AK071866 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023117F09;Expression=AK071866;TENOR=Os03t0738300-01;KEGG=Os03t0738300-01
Chr03	irgsp1_rep	five_prime_UTR	30296415	30297417	.	+	.	Parent=Os03t0738300-01
Chr03	irgsp1_rep	five_prime_UTR	30297512	30297567	.	+	.	Parent=Os03t0738300-01
Chr03	irgsp1_rep	CDS	30297568	30297819	.	+	0	Parent=Os03t0738300-01
Chr03	irgsp1_rep	three_prime_UTR	30297820	30298281	.	+	.	Parent=Os03t0738300-01
Chr03	irgsp1_rep	mRNA	30299582	30299728	.	-	.	ID=Os03t0738350-00;Name=Os03t0738350-00;Locus_id=Os03g0738350;Note=Non-protein coding transcript.;Transcript_evidence=EU948498 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0738350-00
Chr03	irgsp1_rep	exon	30299582	30299728	.	-	.	Parent=Os03t0738350-00
Chr03	irgsp1_rep	mRNA	30299613	30304241	.	+	.	ID=Os03t0738400-01;Name=Os03t0738400-01;Locus_id=Os03g0738400;RAP-DB Gene Symbol Synonym(s)=OsSHM1%2C OsSHMT1%2C OsCDM1%2C OsSHMT;RAP-DB Gene Name Synonym(s)=serine hydroxymethyltransferase 1%2C chlorophyll-deficient mutant 1;Oryzabase Gene Symbol Synonym(s)=OsSHM1%2C SHM1%2C OsSHMT1%2C SHMT1%2C CDM1%2C OsCDM1%2C OsSHTM3%2C SHTM3;Oryzabase Gene Name Synonym(s)=serine hydroxymethyltransferase 1%2C chlorophyll-deficient mutant 1%2C serine hydroxymethyltransferase-3;Note=Serine hydroxymethyltransferase%2C Regulatory function in photorespiration%2C Regulation of chilling tolerance;Transcript_evidence=AK100404,AK060674,AK119226;ORF_evidence=Q10D68;GO=Biological Process: glycine biosynthetic process from serine (GO:0019264),Biological Process: tetrahydrofolate interconversion (GO:0035999),Molecular Function: catalytic activity (GO:0003824),Molecular Function: glycine hydroxymethyltransferase activity (GO:0004372),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent transferase (IPR015424),Pyridoxal phosphate-dependent transferase domain 1 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015421),Serine hydroxymethyltransferase (IPR001085),Serine hydroxymethyltransferase-like domain (IPR039429),Serine hydroxymethyltransferase%2C pyridoxal phosphate binding site (IPR019798);NIAS_FLcDNA=J023086P20,001-029-A01,001-100-H12;Manual Curation=May 28%2C 2020;Literature_PMID=32456700,26191072,25641188;Oryzabase=19250;TENOR=Os03t0738400-01;Subcellular location=mitochondrion (GO:0005739), endoplasmic reticulum (GO:0005783)
Chr03	irgsp1_rep	five_prime_UTR	30299613	30299667	.	+	.	Parent=Os03t0738400-01
Chr03	irgsp1_rep	CDS	30299668	30299754	.	+	0	Parent=Os03t0738400-01
Chr03	irgsp1_rep	CDS	30299872	30299910	.	+	0	Parent=Os03t0738400-01
Chr03	irgsp1_rep	CDS	30300027	30300113	.	+	0	Parent=Os03t0738400-01
Chr03	irgsp1_rep	CDS	30300206	30300327	.	+	0	Parent=Os03t0738400-01
Chr03	irgsp1_rep	CDS	30300468	30300544	.	+	1	Parent=Os03t0738400-01
Chr03	irgsp1_rep	CDS	30301023	30301147	.	+	2	Parent=Os03t0738400-01
Chr03	irgsp1_rep	CDS	30301385	30301477	.	+	0	Parent=Os03t0738400-01
Chr03	irgsp1_rep	CDS	30301728	30301820	.	+	0	Parent=Os03t0738400-01
Chr03	irgsp1_rep	CDS	30301904	30302101	.	+	0	Parent=Os03t0738400-01
Chr03	irgsp1_rep	CDS	30302225	30302329	.	+	0	Parent=Os03t0738400-01
Chr03	irgsp1_rep	CDS	30302423	30302488	.	+	0	Parent=Os03t0738400-01
Chr03	irgsp1_rep	CDS	30302696	30302773	.	+	0	Parent=Os03t0738400-01
Chr03	irgsp1_rep	CDS	30303032	30303143	.	+	0	Parent=Os03t0738400-01
Chr03	irgsp1_rep	CDS	30303229	30303336	.	+	2	Parent=Os03t0738400-01
Chr03	irgsp1_rep	CDS	30303478	30303629	.	+	2	Parent=Os03t0738400-01
Chr03	irgsp1_rep	three_prime_UTR	30303630	30303652	.	+	.	Parent=Os03t0738400-01
Chr03	irgsp1_rep	three_prime_UTR	30303889	30304241	.	+	.	Parent=Os03t0738400-01
Chr03	irgsp1_rep	mRNA	30299938	30300729	.	+	.	ID=Os03t0738400-02;Name=Os03t0738400-02;Locus_id=Os03g0738400;Oryzabase Gene Symbol Synonym(s)=OsSHM1%2C SHM1%2C OsSHMT1%2C SHMT1%2C CDM1%2C OsCDM1%2C OsSHTM3%2C SHTM3%2C OsSHMT%2C SHMT;Oryzabase Gene Name Synonym(s)=serine hydroxymethyltransferase 1%2C chlorophyll-deficient mutant 1%2C serine hydroxymethyltransferase-3;Note=Similar to Serine hydroxymethyltransferase.;Transcript_evidence=AK063056 (DDBJ%2C Best hit);ORF_evidence=Q10D67 (UniProt);NIAS_FLcDNA=001-110-F04;Oryzabase=19250;Expression=AK063056;TENOR=Os03t0738400-02;KEGG=Os03t0738400-02
Chr03	irgsp1_rep	five_prime_UTR	30299938	30300117	.	+	.	Parent=Os03t0738400-02
Chr03	irgsp1_rep	CDS	30300118	30300381	.	+	0	Parent=Os03t0738400-02
Chr03	irgsp1_rep	three_prime_UTR	30300382	30300729	.	+	.	Parent=Os03t0738400-02
Chr03	irgsp1_rep	mRNA	30301026	30304140	.	+	.	ID=Os03t0738400-03;Name=Os03t0738400-03;Locus_id=Os03g0738400;Oryzabase Gene Symbol Synonym(s)=OsSHM1%2C SHM1%2C OsSHMT1%2C SHMT1%2C CDM1%2C OsCDM1%2C OsSHTM3%2C SHTM3%2C OsSHMT%2C SHMT;Oryzabase Gene Name Synonym(s)=serine hydroxymethyltransferase 1%2C chlorophyll-deficient mutant 1%2C serine hydroxymethyltransferase-3;Note=Similar to Serine hydroxymethyltransferase.;Transcript_evidence=AK061913 (DDBJ%2C Best hit);ORF_evidence=Q10D67 (UniProt);GO=Biological Process: glycine metabolic process (GO:0006544),Biological Process: L-serine metabolic process (GO:0006563),Molecular Function: catalytic activity (GO:0003824),Molecular Function: glycine hydroxymethyltransferase activity (GO:0004372),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Serine hydroxymethyltransferase (IPR001085),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424),Serine hydroxymethyltransferase%2C pyridoxal phosphate binding site (IPR019798);NIAS_FLcDNA=001-042-A08;Oryzabase=19250;Expression=AK061913;TENOR=Os03t0738400-03;KEGG=Os03t0738400-03 (EC:2.1.2.1)
Chr03	irgsp1_rep	five_prime_UTR	30301026	30301027	.	+	.	Parent=Os03t0738400-03
Chr03	irgsp1_rep	CDS	30301028	30301147	.	+	0	Parent=Os03t0738400-03
Chr03	irgsp1_rep	CDS	30301385	30301477	.	+	0	Parent=Os03t0738400-03
Chr03	irgsp1_rep	CDS	30301728	30301820	.	+	0	Parent=Os03t0738400-03
Chr03	irgsp1_rep	CDS	30301904	30302101	.	+	0	Parent=Os03t0738400-03
Chr03	irgsp1_rep	CDS	30302225	30302329	.	+	0	Parent=Os03t0738400-03
Chr03	irgsp1_rep	CDS	30302423	30302488	.	+	0	Parent=Os03t0738400-03
Chr03	irgsp1_rep	CDS	30302696	30302773	.	+	0	Parent=Os03t0738400-03
Chr03	irgsp1_rep	CDS	30303032	30303143	.	+	0	Parent=Os03t0738400-03
Chr03	irgsp1_rep	CDS	30303229	30303336	.	+	2	Parent=Os03t0738400-03
Chr03	irgsp1_rep	CDS	30303478	30303629	.	+	2	Parent=Os03t0738400-03
Chr03	irgsp1_rep	three_prime_UTR	30303630	30303652	.	+	.	Parent=Os03t0738400-03
Chr03	irgsp1_rep	three_prime_UTR	30303889	30304140	.	+	.	Parent=Os03t0738400-03
Chr03	irgsp1_rep	mRNA	30315456	30318959	.	+	.	ID=Os03t0738600-01;Name=Os03t0738600-01;Locus_id=Os03g0738600;RAP-DB Gene Symbol Synonym(s)=LOX-L2%2C OsLOX-L2%2C LOX1.1%2C LOX L-2%2C OsLOX2;RAP-DB Gene Name Synonym(s)=LIPOXYGENASE L2%2C Lipoxygenase 2%2C Lipoxygenase L-2;CGSNL Gene Symbol=LOX-L2;CGSNL Gene Name=LIPOXYGENASE L2;Oryzabase Gene Symbol Synonym(s)=OsLOX-L2%2C LOX1.1%2C LOX L-2%2C LOX-2;Oryzabase Gene Name Synonym(s)=Lipoxygenase 2%2C Lipoxygenase L-2;Note=Lipoxygenase%2C Seed germination and longevity;Transcript_evidence=X64396,AK073529;ORF_evidence=P29250,Q10D65;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: protein binding (GO:0005515),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on single donors with incorporation of molecular oxygen%2C incorporation of two atoms of oxygen (GO:0016702),Molecular Function: metal ion binding (GO:0046872);InterPro=Lipoxygenase (IPR000907),Lipoxygenase%2C plant (IPR001246),Lipase/lipooxygenase%2C PLAT/LH2 (IPR008976),PLAT/LH2 domain (IPR001024),Lipoxygenase%2C C-terminal (IPR013819),Lipoxygenase%2C domain 3 (IPR027433),Lipoxygenase%2C iron binding site (IPR020833),Lipoxygenase%2C conserved site (IPR020834);NIAS_FLcDNA=J033046E17;Manual Curation=July 24%2C 2015;Literature_PMID=24792034,1597177;Oryzabase=8767;Expression=AK073529;TENOR=Os03t0738600-01;KEGG=Os03t0738600-01
Chr03	irgsp1_rep	five_prime_UTR	30315456	30315569	.	+	.	Parent=Os03t0738600-01
Chr03	irgsp1_rep	CDS	30315570	30315756	.	+	0	Parent=Os03t0738600-01
Chr03	irgsp1_rep	CDS	30315835	30316127	.	+	2	Parent=Os03t0738600-01
Chr03	irgsp1_rep	CDS	30316242	30316479	.	+	0	Parent=Os03t0738600-01
Chr03	irgsp1_rep	CDS	30316865	30318759	.	+	2	Parent=Os03t0738600-01
Chr03	irgsp1_rep	three_prime_UTR	30318760	30318959	.	+	.	Parent=Os03t0738600-01
Chr03	irgsp1_rep	mRNA	30319466	30321640	.	+	.	ID=Os03t0738700-01;Name=Os03t0738700-01;Locus_id=Os03g0738700;Oryzabase Gene Symbol Synonym(s)=OsWD40-89;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK111764 (DDBJ%2C Best hit);ORF_evidence=NP_001147075.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J023062O11;Oryzabase=10770;Expression=AK111764;TENOR=Os03t0738700-01;KEGG=Os03t0738700-01
Chr03	irgsp1_rep	five_prime_UTR	30319466	30319538	.	+	.	Parent=Os03t0738700-01
Chr03	irgsp1_rep	CDS	30319539	30321008	.	+	0	Parent=Os03t0738700-01
Chr03	irgsp1_rep	three_prime_UTR	30321009	30321640	.	+	.	Parent=Os03t0738700-01
Chr03	irgsp1_rep	mRNA	30325808	30327917	.	+	.	ID=Os03t0738900-00;Name=Os03t0738900-00;Locus_id=Os03g0738900;Note=NPH3 domain containing protein.;Transcript_evidence=EU950151 (DDBJ);ORF_evidence=NP_001051215.2 (RefSeq);GO=Biological Process: response to light stimulus (GO:0009416),Molecular Function: signal transducer activity (GO:0004871);InterPro=NPH3 (IPR004249),BTB/POZ fold (IPR011333);TENOR=Os03t0738900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	30325808	30325888	.	+	0	Parent=Os03t0738900-00
Chr03	irgsp1_rep	CDS	30326028	30327917	.	+	0	Parent=Os03t0738900-00
Chr03	irgsp1_rep	mRNA	30342476	30343128	.	-	.	ID=Os03t0739500-01;Name=Os03t0739500-01;Locus_id=Os03g0739500;Note=Conserved hypothetical protein.;Transcript_evidence=AK241255 (DDBJ%2C Best hit);ORF_evidence=Q5ZAF7 (UniProt);NIAS_FLcDNA=J065130K24;TENOR=Os03t0739500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	30342908	30343128	.	-	.	Parent=Os03t0739500-01
Chr03	irgsp1_rep	CDS	30342776	30342907	.	-	0	Parent=Os03t0739500-01
Chr03	irgsp1_rep	three_prime_UTR	30342476	30342775	.	-	.	Parent=Os03t0739500-01
Chr03	irgsp1_rep	mRNA	30349191	30350948	.	+	.	ID=Os03t0739700-01;Name=Os03t0739700-01;Locus_id=Os03g0739700;Note=Uncharacterised protein family UPF0114 domain containing protein.;Transcript_evidence=AK062272 (DDBJ%2C Best hit);ORF_evidence=A2XLU1 (UniProt);InterPro=Uncharacterised protein family UPF0114 (IPR005134);NIAS_FLcDNA=001-100-A10;Expression=AK062272;TENOR=Os03t0739700-01;KEGG=Os03t0739700-01
Chr03	irgsp1_rep	five_prime_UTR	30349191	30349247	.	+	.	Parent=Os03t0739700-01
Chr03	irgsp1_rep	CDS	30349248	30349721	.	+	0	Parent=Os03t0739700-01
Chr03	irgsp1_rep	CDS	30349847	30349924	.	+	0	Parent=Os03t0739700-01
Chr03	irgsp1_rep	CDS	30350044	30350143	.	+	0	Parent=Os03t0739700-01
Chr03	irgsp1_rep	CDS	30350259	30350389	.	+	2	Parent=Os03t0739700-01
Chr03	irgsp1_rep	CDS	30350492	30350743	.	+	0	Parent=Os03t0739700-01
Chr03	irgsp1_rep	three_prime_UTR	30350744	30350948	.	+	.	Parent=Os03t0739700-01
Chr03	irgsp1_rep	mRNA	30354281	30354327	.	-	.	ID=Os03t0739900-00;Name=Os03t0739900-00;Locus_id=Os03g0739900;Note=Non-protein coding transcript.;Transcript_evidence=FJ379529 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0739900-00
Chr03	irgsp1_rep	exon	30354281	30354327	.	-	.	Parent=Os03t0739900-00
Chr03	irgsp1_rep	mRNA	30368953	30369657	.	+	.	ID=Os03t0740200-00;Name=Os03t0740200-00;Locus_id=Os03g0740200;Note=Conserved hypothetical protein.;Transcript_evidence=EU969188 (DDBJ);ORF_evidence=NP_001051217.1 (RefSeq);TENOR=Os03t0740200-00;KEGG=Os03t0740200-00
Chr03	irgsp1_rep	CDS	30368953	30369465	.	+	0	Parent=Os03t0740200-00
Chr03	irgsp1_rep	three_prime_UTR	30369466	30369657	.	+	.	Parent=Os03t0740200-00
Chr03	irgsp1_rep	mRNA	30381680	30385974	.	+	.	ID=Os03t0740600-01;Name=Os03t0740600-01;Locus_id=Os03g0740600;Note=Similar to Deoxyhypusine synthase (EC 2.5.1.46).;Transcript_evidence=AK101589 (DDBJ%2C Best hit);ORF_evidence=D0PXJ0 (UniProt);GO=Biological Process: peptidyl-lysine modification to hypusine (GO:0008612);InterPro=Deoxyhypusine synthase (IPR002773);NIAS_FLcDNA=J033051A22;Expression=AK101589;TENOR=Os03t0740600-01;KEGG=Os03t0740600-01 (EC:2.5.1.46)
Chr03	irgsp1_rep	five_prime_UTR	30381680	30381960	.	+	.	Parent=Os03t0740600-01
Chr03	irgsp1_rep	CDS	30381961	30382188	.	+	0	Parent=Os03t0740600-01
Chr03	irgsp1_rep	CDS	30382784	30382951	.	+	0	Parent=Os03t0740600-01
Chr03	irgsp1_rep	CDS	30383101	30383319	.	+	0	Parent=Os03t0740600-01
Chr03	irgsp1_rep	CDS	30383890	30383973	.	+	0	Parent=Os03t0740600-01
Chr03	irgsp1_rep	CDS	30384566	30384669	.	+	0	Parent=Os03t0740600-01
Chr03	irgsp1_rep	CDS	30384744	30384981	.	+	1	Parent=Os03t0740600-01
Chr03	irgsp1_rep	CDS	30385440	30385526	.	+	0	Parent=Os03t0740600-01
Chr03	irgsp1_rep	three_prime_UTR	30385527	30385655	.	+	.	Parent=Os03t0740600-01
Chr03	irgsp1_rep	three_prime_UTR	30385754	30385974	.	+	.	Parent=Os03t0740600-01
Chr03	irgsp1_rep	mRNA	30381881	30385901	.	+	.	ID=Os03t0740600-02;Name=Os03t0740600-02;Locus_id=Os03g0740600;Note=Similar to Deoxyhypusine synthase (EC 2.5.1.46).;Transcript_evidence=AK073852 (DDBJ%2C Best hit);ORF_evidence=D0PXJ0 (UniProt);GO=Biological Process: peptidyl-lysine modification to hypusine (GO:0008612);InterPro=Deoxyhypusine synthase (IPR002773);NIAS_FLcDNA=J033073I16;Expression=AK073852;TENOR=Os03t0740600-02;KEGG=Os03t0740600-02 (EC:2.5.1.46)
Chr03	irgsp1_rep	five_prime_UTR	30381881	30381960	.	+	.	Parent=Os03t0740600-02
Chr03	irgsp1_rep	CDS	30381961	30382188	.	+	0	Parent=Os03t0740600-02
Chr03	irgsp1_rep	CDS	30382784	30382951	.	+	0	Parent=Os03t0740600-02
Chr03	irgsp1_rep	CDS	30383101	30383319	.	+	0	Parent=Os03t0740600-02
Chr03	irgsp1_rep	CDS	30383890	30383973	.	+	0	Parent=Os03t0740600-02
Chr03	irgsp1_rep	CDS	30384566	30384669	.	+	0	Parent=Os03t0740600-02
Chr03	irgsp1_rep	CDS	30384744	30384981	.	+	1	Parent=Os03t0740600-02
Chr03	irgsp1_rep	CDS	30385440	30385526	.	+	0	Parent=Os03t0740600-02
Chr03	irgsp1_rep	three_prime_UTR	30385527	30385901	.	+	.	Parent=Os03t0740600-02
Chr03	irgsp1_rep	mRNA	30384564	30385528	.	-	.	ID=Os03t0740650-00;Name=Os03t0740650-00;Locus_id=Os03g0740650;Note=Non-protein coding transcript.;Transcript_evidence=BT016909 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0740650-00
Chr03	irgsp1_rep	exon	30385457	30385528	.	-	.	Parent=Os03t0740650-00
Chr03	irgsp1_rep	exon	30384744	30384995	.	-	.	Parent=Os03t0740650-00
Chr03	irgsp1_rep	exon	30384564	30384669	.	-	.	Parent=Os03t0740650-00
Chr03	irgsp1_rep	mRNA	30386616	30391989	.	+	.	ID=Os03t0740700-01;Name=Os03t0740700-01;Locus_id=Os03g0740700;Note=Protein similar to CwfJ%2C C-terminal 2 domain containing protein.;Transcript_evidence=AK102723 (DDBJ%2C Best hit);ORF_evidence=NP_564716.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Cwf19-like protein%2C C-terminal domain-2 (IPR006767),Cwf19-like%2C C-terminal domain-1 (IPR006768),Histidine triad-like motif (IPR011146);NIAS_FLcDNA=J033105J16;Expression=AK102723;TENOR=Os03t0740700-01;KEGG=Os03t0740700-01
Chr03	irgsp1_rep	five_prime_UTR	30386616	30386768	.	+	.	Parent=Os03t0740700-01
Chr03	irgsp1_rep	CDS	30386769	30387124	.	+	0	Parent=Os03t0740700-01
Chr03	irgsp1_rep	CDS	30387231	30387441	.	+	1	Parent=Os03t0740700-01
Chr03	irgsp1_rep	CDS	30388725	30388925	.	+	0	Parent=Os03t0740700-01
Chr03	irgsp1_rep	CDS	30389010	30389552	.	+	0	Parent=Os03t0740700-01
Chr03	irgsp1_rep	CDS	30390031	30390107	.	+	0	Parent=Os03t0740700-01
Chr03	irgsp1_rep	CDS	30390677	30391028	.	+	1	Parent=Os03t0740700-01
Chr03	irgsp1_rep	CDS	30391182	30391394	.	+	0	Parent=Os03t0740700-01
Chr03	irgsp1_rep	CDS	30391484	30391810	.	+	0	Parent=Os03t0740700-01
Chr03	irgsp1_rep	three_prime_UTR	30391811	30391989	.	+	.	Parent=Os03t0740700-01
Chr03	irgsp1_rep	mRNA	30395654	30398369	.	+	.	ID=Os03t0740800-01;Name=Os03t0740800-01;Locus_id=Os03g0740800;Oryzabase Gene Symbol Synonym(s)=XRCC4;Note=DNA double-strand break repair and VJ recombination XRCC4%2C C-terminal domain containing protein.;Transcript_evidence=AK071772 (DDBJ%2C Best hit);ORF_evidence=B4G0P1 (UniProt);GO=Biological Process: double-strand break repair (GO:0006302),Biological Process: DNA recombination (GO:0006310),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=DNA double-strand break repair and VJ recombination XRCC4 (IPR010585),DNA double-strand break repair and VJ recombination XRCC4%2C C-terminal (IPR014751);NIAS_FLcDNA=J023110F02;Oryzabase=21303;Expression=AK071772;TENOR=Os03t0740800-01;KEGG=Os03t0740800-01
Chr03	irgsp1_rep	five_prime_UTR	30395654	30395716	.	+	.	Parent=Os03t0740800-01
Chr03	irgsp1_rep	CDS	30395717	30396025	.	+	0	Parent=Os03t0740800-01
Chr03	irgsp1_rep	CDS	30397125	30397253	.	+	0	Parent=Os03t0740800-01
Chr03	irgsp1_rep	CDS	30397438	30397560	.	+	0	Parent=Os03t0740800-01
Chr03	irgsp1_rep	CDS	30397854	30398117	.	+	0	Parent=Os03t0740800-01
Chr03	irgsp1_rep	three_prime_UTR	30398118	30398369	.	+	.	Parent=Os03t0740800-01
Chr03	irgsp1_rep	mRNA	30397995	30401277	.	-	.	ID=Os03t0740833-01;Name=Os03t0740833-01;Locus_id=Os03g0740833;Note=Conserved hypothetical protein.;Transcript_evidence=AK241616 (DDBJ%2C Best hit);ORF_evidence=NP_001173636.1 (RefSeq);NIAS_FLcDNA=J065186D23;TENOR=Os03t0740833-01;KEGG=Os03t0740833-01
Chr03	irgsp1_rep	five_prime_UTR	30399585	30401277	.	-	.	Parent=Os03t0740833-01
Chr03	irgsp1_rep	CDS	30399144	30399584	.	-	0	Parent=Os03t0740833-01
Chr03	irgsp1_rep	three_prime_UTR	30397995	30399143	.	-	.	Parent=Os03t0740833-01
Chr03	irgsp1_rep	mRNA	30400921	30401584	.	+	.	ID=Os03t0740900-01;Name=Os03t0740900-01;Locus_id=Os03g0740900;Note=Non-protein coding transcript.;Transcript_evidence=AK062364 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-101-H08;TENOR=Os03t0740900-01
Chr03	irgsp1_rep	exon	30400921	30401584	.	+	.	Parent=Os03t0740900-01
Chr03	irgsp1_rep	mRNA	30401970	30402872	.	-	.	ID=Os03t0741000-00;Name=Os03t0741000-00;Locus_id=Os03g0741000;Note=Similar to Acyl-[acyl-carrier protein] desaturase.;Transcript_evidence=BT041873 (DDBJ);ORF_evidence=A2YS76 (UniProt);GO=Biological Process: fatty acid metabolic process (GO:0006631),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: acyl-[acyl-carrier-protein] desaturase activity (GO:0045300),Molecular Function: transition metal ion binding (GO:0046914);InterPro=Fatty acid desaturase%2C type 2 (IPR005067),Ferritin/ribonucleotide reductase-like (IPR009078),Ribonucleotide reductase-related (IPR012348);TENOR=Os03t0741000-00;KEGG=Os03t0741000-00 (EC:1.14.19.2)
Chr03	irgsp1_rep	CDS	30401970	30402872	.	-	0	Parent=Os03t0741000-00
Chr03	irgsp1_rep	mRNA	30403047	30405978	.	+	.	ID=Os03t0741050-01;Name=Os03t0741050-01;Locus_id=Os03g0741050;Note=Non-protein coding transcript.;Transcript_evidence=AK243163 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J100034L01;TENOR=Os03t0741050-01
Chr03	irgsp1_rep	exon	30403047	30405978	.	+	.	Parent=Os03t0741050-01
Chr03	irgsp1_rep	mRNA	30406830	30409342	.	+	.	ID=Os03t0741100-01;Name=Os03t0741100-01;Locus_id=Os03g0741100;RAP-DB Gene Symbol Synonym(s)=OsbHLH148;RAP-DB Gene Name Synonym(s)=basic helix-loop-helix protein 148;Oryzabase Gene Symbol Synonym(s)=OsbHLH148%2C bHLH148;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 148;Note=Basic helix-loop-helix transcription factor%2C Drought tolerance;Transcript_evidence=AK071734;ORF_evidence=Q75KV9;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);NIAS_FLcDNA=J023108N23;Manual Curation=June 11%2C 2015;Literature_PMID=21332845;Oryzabase=9485;Expression=AK071734;TENOR=Os03t0741100-01;KEGG=Os03t0741100-01
Chr03	irgsp1_rep	five_prime_UTR	30406830	30406907	.	+	.	Parent=Os03t0741100-01
Chr03	irgsp1_rep	CDS	30406908	30407384	.	+	0	Parent=Os03t0741100-01
Chr03	irgsp1_rep	CDS	30407752	30408039	.	+	0	Parent=Os03t0741100-01
Chr03	irgsp1_rep	CDS	30409005	30409139	.	+	0	Parent=Os03t0741100-01
Chr03	irgsp1_rep	three_prime_UTR	30409140	30409342	.	+	.	Parent=Os03t0741100-01
Chr03	irgsp1_rep	mRNA	30422191	30425386	.	+	.	ID=Os03t0741400-01;Name=Os03t0741400-01;Locus_id=Os03g0741400;CGSNL Gene Symbol=WRKY121;CGSNL Gene Name=WRKY GENE 121;Oryzabase Gene Symbol Synonym(s)=OsWRKY121;Note=Similar to SUSIBA2.;Transcript_evidence=AK121838 (DDBJ%2C Best hit);ORF_evidence=NP_001105837.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657),Zn-cluster domain (IPR018872);NIAS_FLcDNA=J033100L17;Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=9243;Expression=AK121838;TENOR=Os03t0741400-01;KEGG=Os03t0741400-01
Chr03	irgsp1_rep	five_prime_UTR	30422191	30422342	.	+	.	Parent=Os03t0741400-01
Chr03	irgsp1_rep	five_prime_UTR	30423023	30423045	.	+	.	Parent=Os03t0741400-01
Chr03	irgsp1_rep	CDS	30423046	30423941	.	+	0	Parent=Os03t0741400-01
Chr03	irgsp1_rep	CDS	30424030	30424155	.	+	1	Parent=Os03t0741400-01
Chr03	irgsp1_rep	CDS	30424790	30424931	.	+	1	Parent=Os03t0741400-01
Chr03	irgsp1_rep	three_prime_UTR	30424932	30425386	.	+	.	Parent=Os03t0741400-01
Chr03	irgsp1_rep	mRNA	30430733	30432679	.	+	.	ID=Os03t0741500-01;Name=Os03t0741500-01;Locus_id=Os03g0741500;Note=Similar to CytoChrome P450 family protein%2C expressed.;Transcript_evidence=AK110867 (DDBJ%2C Best hit);ORF_evidence=Q2QLJ2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);NIAS_FLcDNA=002-172-E02;TENOR=Os03t0741500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	30430733	30430865	.	+	.	Parent=Os03t0741500-01
Chr03	irgsp1_rep	CDS	30430866	30431803	.	+	0	Parent=Os03t0741500-01
Chr03	irgsp1_rep	CDS	30431899	30431962	.	+	1	Parent=Os03t0741500-01
Chr03	irgsp1_rep	three_prime_UTR	30431963	30432679	.	+	.	Parent=Os03t0741500-01
Chr03	irgsp1_rep	mRNA	30430890	30432446	.	-	.	ID=Os03t0741525-00;Name=Os03t0741525-00;Locus_id=Os03g0741525;Note=Hypothetical protein.;Transcript_evidence=tplb0024g24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0741525-00
Chr03	irgsp1_rep	five_prime_UTR	30432192	30432446	.	-	.	Parent=Os03t0741525-00
Chr03	irgsp1_rep	CDS	30431853	30432191	.	-	0	Parent=Os03t0741525-00
Chr03	irgsp1_rep	CDS	30430890	30431714	.	-	0	Parent=Os03t0741525-00
Chr03	irgsp1_rep	mRNA	30436490	30437889	.	+	.	ID=Os03t0741600-00;Name=Os03t0741600-00;Locus_id=Os03g0741600;Note=Prenylated rab acceptor PRA1 family protein.;Transcript_evidence=tplb0040f16 (Wheat FLcDNA);ORF_evidence=NP_001151354.1 (RefSeq);InterPro=Prenylated rab acceptor PRA1 (IPR004895);TENOR=Os03t0741600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	30436490	30437512	.	+	0	Parent=Os03t0741600-00
Chr03	irgsp1_rep	three_prime_UTR	30437513	30437525	.	+	.	Parent=Os03t0741600-00
Chr03	irgsp1_rep	three_prime_UTR	30437607	30437889	.	+	.	Parent=Os03t0741600-00
Chr03	irgsp1_rep	mRNA	30440393	30445261	.	-	.	ID=Os03t0741700-00;Name=Os03t0741700-00;Locus_id=Os03g0741700;Note=Hypothetical conserved gene.;Transcript_evidence=AK374593 (DDBJ);ORF_evidence=Q75KW5 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);TENOR=Os03t0741700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	30445042	30445261	.	-	.	Parent=Os03t0741700-00
Chr03	irgsp1_rep	CDS	30444918	30445041	.	-	0	Parent=Os03t0741700-00
Chr03	irgsp1_rep	CDS	30442874	30442973	.	-	2	Parent=Os03t0741700-00
Chr03	irgsp1_rep	CDS	30442119	30442473	.	-	1	Parent=Os03t0741700-00
Chr03	irgsp1_rep	three_prime_UTR	30442112	30442118	.	-	.	Parent=Os03t0741700-00
Chr03	irgsp1_rep	three_prime_UTR	30441878	30441973	.	-	.	Parent=Os03t0741700-00
Chr03	irgsp1_rep	three_prime_UTR	30441487	30441726	.	-	.	Parent=Os03t0741700-00
Chr03	irgsp1_rep	three_prime_UTR	30440975	30441047	.	-	.	Parent=Os03t0741700-00
Chr03	irgsp1_rep	three_prime_UTR	30440393	30440599	.	-	.	Parent=Os03t0741700-00
Chr03	irgsp1_rep	mRNA	30442873	30445042	.	+	.	ID=Os03t0741900-00;Name=Os03t0741900-00;Locus_id=Os03g0741900;Note=Hypothetical protein.;Transcript_evidence=BT084541 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0741900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	30442873	30442975	.	+	0	Parent=Os03t0741900-00
Chr03	irgsp1_rep	CDS	30444920	30445042	.	+	2	Parent=Os03t0741900-00
Chr03	irgsp1_rep	mRNA	30451518	30452854	.	+	.	ID=Os03t0742300-01;Name=Os03t0742300-01;Locus_id=Os03g0742300;Oryzabase Gene Symbol Synonym(s)=OsRR41%2C RR41%2C Rra14%2C OsRR14%2C RR14%2C OsRRA14%2C OsEnS-54;Oryzabase Gene Name Synonym(s)=response regulator 41%2C A-type response regulator 14%2C response regulator 14%2C A-type RR 14%2C endosperm-specific gene 54;Note=Signal transduction response regulator%2C receiver region domain containing protein.;Transcript_evidence=AK108126 (DDBJ%2C Best hit);ORF_evidence=A2XLV6 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: two-component response regulator activity (GO:0000156);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),CheY-like superfamily (IPR011006);NIAS_FLcDNA=002-139-D05;Oryzabase=9836;Expression=AK108126;TENOR=Os03t0742300-01;KEGG=Os03t0742300-01
Chr03	irgsp1_rep	five_prime_UTR	30451518	30451544	.	+	.	Parent=Os03t0742300-01
Chr03	irgsp1_rep	CDS	30451545	30451598	.	+	0	Parent=Os03t0742300-01
Chr03	irgsp1_rep	CDS	30451688	30451843	.	+	0	Parent=Os03t0742300-01
Chr03	irgsp1_rep	CDS	30451985	30452104	.	+	0	Parent=Os03t0742300-01
Chr03	irgsp1_rep	CDS	30452585	30452638	.	+	0	Parent=Os03t0742300-01
Chr03	irgsp1_rep	three_prime_UTR	30452639	30452854	.	+	.	Parent=Os03t0742300-01
Chr03	irgsp1_rep	mRNA	30453833	30456585	.	-	.	ID=Os03t0742400-01;Name=Os03t0742400-01;Locus_id=Os03g0742400;Oryzabase Gene Symbol Synonym(s)=OsMRS2-7;Oryzabase Gene Name Synonym(s)=MRS2/MGT family member 7;Note=Similar to MRS2-7.;Transcript_evidence=AK060249 (DDBJ%2C Best hit);ORF_evidence=Q10D38 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: metal ion transmembrane transporter activity (GO:0046873);InterPro=Mg2+ transporter protein%2C CorA-like/Zinc transport protein ZntB (IPR002523);NIAS_FLcDNA=001-004-A11;Oryzabase=14378;Expression=AK060249;TENOR=Os03t0742400-01;KEGG=Os03t0742400-01
Chr03	irgsp1_rep	five_prime_UTR	30456584	30456585	.	-	.	Parent=Os03t0742400-01
Chr03	irgsp1_rep	CDS	30456464	30456583	.	-	0	Parent=Os03t0742400-01
Chr03	irgsp1_rep	CDS	30455637	30455711	.	-	0	Parent=Os03t0742400-01
Chr03	irgsp1_rep	CDS	30454965	30455192	.	-	0	Parent=Os03t0742400-01
Chr03	irgsp1_rep	CDS	30454845	30454889	.	-	0	Parent=Os03t0742400-01
Chr03	irgsp1_rep	CDS	30454646	30454690	.	-	0	Parent=Os03t0742400-01
Chr03	irgsp1_rep	CDS	30454536	30454565	.	-	0	Parent=Os03t0742400-01
Chr03	irgsp1_rep	CDS	30454145	30454264	.	-	0	Parent=Os03t0742400-01
Chr03	irgsp1_rep	CDS	30453971	30454057	.	-	0	Parent=Os03t0742400-01
Chr03	irgsp1_rep	three_prime_UTR	30453833	30453970	.	-	.	Parent=Os03t0742400-01
Chr03	irgsp1_rep	mRNA	30476518	30480139	.	+	.	ID=Os03t0742800-01;Name=Os03t0742800-01;Locus_id=Os03g0742800;Note=Similar to Auxin-responsive protein IAA14 (Indoleacetic acid-induced protein 14) (SOLITARY-ROOT protein).;Transcript_evidence=AK069015 (DDBJ%2C Best hit);ORF_evidence=Q9FG78 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888),Cellular Component: COPII vesicle coat (GO:0030127),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C Sec23/Sec24-type (IPR006895),Sec23/Sec24%2C trunk domain (IPR006896),Sec23/Sec24%2C helical domain (IPR006900),Gelsolin domain (IPR007123),Sec23/Sec24 beta-sandwich (IPR012990);NIAS_FLcDNA=J013170A05;Expression=AK069015;TENOR=Os03t0742800-01;KEGG=Os03t0742800-01
Chr03	irgsp1_rep	five_prime_UTR	30476518	30476604	.	+	.	Parent=Os03t0742800-01
Chr03	irgsp1_rep	CDS	30476605	30477216	.	+	0	Parent=Os03t0742800-01
Chr03	irgsp1_rep	CDS	30478062	30479723	.	+	0	Parent=Os03t0742800-01
Chr03	irgsp1_rep	three_prime_UTR	30479724	30480139	.	+	.	Parent=Os03t0742800-01
Chr03	irgsp1_rep	mRNA	30476541	30482124	.	+	.	ID=Os03t0742800-02;Name=Os03t0742800-02;Locus_id=Os03g0742800;Note=Similar to Auxin-responsive protein IAA14 (Indoleacetic acid-induced protein 14) (SOLITARY-ROOT protein).;Transcript_evidence=AK102769 (DDBJ%2C Best hit);ORF_evidence=Q9FG78 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888),Cellular Component: COPII vesicle coat (GO:0030127),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C Sec23/Sec24-type (IPR006895),Sec23/Sec24%2C trunk domain (IPR006896),Sec23/Sec24%2C helical domain (IPR006900),Gelsolin domain (IPR007123),Sec23/Sec24 beta-sandwich (IPR012990);NIAS_FLcDNA=J033107G01;Expression=AK102769;TENOR=Os03t0742800-02;KEGG=Os03t0742800-02
Chr03	irgsp1_rep	five_prime_UTR	30476541	30476604	.	+	.	Parent=Os03t0742800-02
Chr03	irgsp1_rep	CDS	30476605	30477216	.	+	0	Parent=Os03t0742800-02
Chr03	irgsp1_rep	CDS	30478062	30479723	.	+	0	Parent=Os03t0742800-02
Chr03	irgsp1_rep	three_prime_UTR	30479724	30480007	.	+	.	Parent=Os03t0742800-02
Chr03	irgsp1_rep	three_prime_UTR	30481507	30482124	.	+	.	Parent=Os03t0742800-02
Chr03	irgsp1_rep	mRNA	30476536	30480047	.	-	.	ID=Os03t0742850-00;Name=Os03t0742850-00;Locus_id=Os03g0742850;Note=Hypothetical protein.;Transcript_evidence=tplb0023b12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0742850-00
Chr03	irgsp1_rep	five_prime_UTR	30478313	30480047	.	-	.	Parent=Os03t0742850-00
Chr03	irgsp1_rep	CDS	30478058	30478312	.	-	0	Parent=Os03t0742850-00
Chr03	irgsp1_rep	three_prime_UTR	30478044	30478057	.	-	.	Parent=Os03t0742850-00
Chr03	irgsp1_rep	three_prime_UTR	30476536	30477201	.	-	.	Parent=Os03t0742850-00
Chr03	irgsp1_rep	mRNA	30480796	30483289	.	-	.	ID=Os03t0742900-01;Name=Os03t0742900-01;Locus_id=Os03g0742900;RAP-DB Gene Symbol Synonym(s)=IAA13;CGSNL Gene Symbol=IAA13;Oryzabase Gene Symbol Synonym(s)=OsIAA13%2C OsIAA1%2C OsiIAA1;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 13%2C Aux/IAA protein 1;Note=Auxin/indole-3-acetic acid protein%2C Control of aerenchyma and lateral root development;Transcript_evidence=AK100790,AK059838;ORF_evidence=Q10D34;GO=Molecular Function: protein binding (GO:0005515);InterPro=AUX/IAA domain (IPR033389),PB1 domain (IPR000270);NIAS_FLcDNA=J023121A20,006-206-C11;Manual Curation=September 26%2C 2019;Literature_PMID=31548376;Oryzabase=10902;Expression=AK100790;TENOR=Os03t0742900-01;KEGG=Os03t0742900-01
Chr03	irgsp1_rep	five_prime_UTR	30483130	30483289	.	-	.	Parent=Os03t0742900-01
Chr03	irgsp1_rep	CDS	30482879	30483129	.	-	0	Parent=Os03t0742900-01
Chr03	irgsp1_rep	CDS	30481529	30481794	.	-	1	Parent=Os03t0742900-01
Chr03	irgsp1_rep	CDS	30481322	30481415	.	-	2	Parent=Os03t0742900-01
Chr03	irgsp1_rep	CDS	30481136	30481197	.	-	1	Parent=Os03t0742900-01
Chr03	irgsp1_rep	CDS	30481014	30481051	.	-	2	Parent=Os03t0742900-01
Chr03	irgsp1_rep	three_prime_UTR	30480796	30481013	.	-	.	Parent=Os03t0742900-01
Chr03	irgsp1_rep	mRNA	30480720	30481357	.	-	.	ID=Os03t0742900-03;Name=Os03t0742900-03;Locus_id=Os03g0742900;CGSNL Gene Symbol=IAA13;Oryzabase Gene Symbol Synonym(s)=OsIAA13%2C OsIAA1%2C OsiIAA1;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 13%2C Aux/IAA protein 1;Note=Similar to cDNA clone:006-206-C11%2C full insert sequence.;Transcript_evidence=AK062852 (DDBJ%2C Best hit);ORF_evidence=B7E463 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Aux/IAA-ARF-dimerisation (IPR011525);NIAS_FLcDNA=001-108-A04;Oryzabase=10902;Expression=AK062852;TENOR=Os03t0742900-03;KEGG=Os03t0742900-03
Chr03	irgsp1_rep	five_prime_UTR	30481357	30481357	.	-	.	Parent=Os03t0742900-03
Chr03	irgsp1_rep	CDS	30481322	30481356	.	-	0	Parent=Os03t0742900-03
Chr03	irgsp1_rep	CDS	30481136	30481197	.	-	1	Parent=Os03t0742900-03
Chr03	irgsp1_rep	CDS	30481014	30481051	.	-	2	Parent=Os03t0742900-03
Chr03	irgsp1_rep	three_prime_UTR	30480720	30481013	.	-	.	Parent=Os03t0742900-03
Chr03	irgsp1_rep	mRNA	30502713	30507060	.	+	.	ID=Os03t0743200-01;Name=Os03t0743200-01;Locus_id=Os03g0743200;Note=Hypothetical conserved gene.;Transcript_evidence=AK240979 (DDBJ%2C Best hit);ORF_evidence=Q84MQ1 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J065049G14;TENOR=Os03t0743200-01;KEGG=Os03t0743200-01
Chr03	irgsp1_rep	CDS	30502713	30504518	.	+	0	Parent=Os03t0743200-01
Chr03	irgsp1_rep	three_prime_UTR	30504519	30504539	.	+	.	Parent=Os03t0743200-01
Chr03	irgsp1_rep	three_prime_UTR	30504836	30504953	.	+	.	Parent=Os03t0743200-01
Chr03	irgsp1_rep	three_prime_UTR	30505665	30505814	.	+	.	Parent=Os03t0743200-01
Chr03	irgsp1_rep	three_prime_UTR	30506451	30507060	.	+	.	Parent=Os03t0743200-01
Chr03	irgsp1_rep	mRNA	30513870	30516672	.	+	.	ID=Os03t0743400-01;Name=Os03t0743400-01;Locus_id=Os03g0743400;Oryzabase Gene Name Synonym(s)=Histone H2A.hv1;Note=Similar to H2A protein.;Transcript_evidence=AK120299 (DDBJ%2C Best hit);ORF_evidence=B4FH55 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H2A (IPR002119),Histone core (IPR007125),Histone-fold (IPR009072);NIAS_FLcDNA=J013052C06;Oryzabase=17630;Expression=AK120299;TENOR=Os03t0743400-01;KEGG=Os03t0743400-01
Chr03	irgsp1_rep	five_prime_UTR	30513870	30513971	.	+	.	Parent=Os03t0743400-01
Chr03	irgsp1_rep	five_prime_UTR	30514128	30514213	.	+	.	Parent=Os03t0743400-01
Chr03	irgsp1_rep	CDS	30514214	30514330	.	+	0	Parent=Os03t0743400-01
Chr03	irgsp1_rep	CDS	30515976	30516272	.	+	0	Parent=Os03t0743400-01
Chr03	irgsp1_rep	three_prime_UTR	30516273	30516672	.	+	.	Parent=Os03t0743400-01
Chr03	irgsp1_rep	mRNA	30517480	30519627	.	+	.	ID=Os03t0743500-01;Name=Os03t0743500-01;Locus_id=Os03g0743500;CGSNL Gene Symbol=CML4;CGSNL Gene Name=CALMODULIN-LIKE PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OsCML4;Oryzabase Gene Name Synonym(s)=calmodulin-like 4;Note=Calcium-binding EF-hand domain containing protein.;Transcript_evidence=AK069620 (DDBJ%2C Best hit);ORF_evidence=B9FBR7 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J023024J16;Oryzabase=10236;TENOR=Os03t0743500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	30517480	30518751	.	+	.	Parent=Os03t0743500-01
Chr03	irgsp1_rep	CDS	30518752	30518964	.	+	0	Parent=Os03t0743500-01
Chr03	irgsp1_rep	three_prime_UTR	30518965	30519627	.	+	.	Parent=Os03t0743500-01
Chr03	irgsp1_rep	mRNA	30517571	30519662	.	+	.	ID=Os03t0743500-02;Name=Os03t0743500-02;Locus_id=Os03g0743500;CGSNL Gene Symbol=CML4;CGSNL Gene Name=CALMODULIN-LIKE PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OsCML4;Oryzabase Gene Name Synonym(s)=calmodulin-like 4;Note=Similar to Calmodulin 1 (Fragment).;Transcript_evidence=AK067697 (DDBJ%2C Best hit);ORF_evidence=Q84MN0 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J013118D08;Oryzabase=10236;Expression=AK067697;TENOR=Os03t0743500-02;KEGG=Os03t0743500-02
Chr03	irgsp1_rep	five_prime_UTR	30517571	30517654	.	+	.	Parent=Os03t0743500-02
Chr03	irgsp1_rep	CDS	30517655	30517727	.	+	0	Parent=Os03t0743500-02
Chr03	irgsp1_rep	CDS	30518789	30518946	.	+	2	Parent=Os03t0743500-02
Chr03	irgsp1_rep	CDS	30519063	30519143	.	+	0	Parent=Os03t0743500-02
Chr03	irgsp1_rep	CDS	30519230	30519382	.	+	0	Parent=Os03t0743500-02
Chr03	irgsp1_rep	three_prime_UTR	30519383	30519662	.	+	.	Parent=Os03t0743500-02
Chr03	irgsp1_rep	mRNA	30519650	30521125	.	-	.	ID=Os03t0743650-01;Name=Os03t0743650-01;Locus_id=Os03g0743650;Note=Conserved hypothetical protein.;Transcript_evidence=AK243673 (DDBJ%2C Best hit);ORF_evidence=NP_001173639.1 (RefSeq);NIAS_FLcDNA=J100090C22;TENOR=Os03t0743650-01;KEGG=Os03t0743650-01
Chr03	irgsp1_rep	five_prime_UTR	30520429	30521125	.	-	.	Parent=Os03t0743650-01
Chr03	irgsp1_rep	CDS	30520081	30520428	.	-	0	Parent=Os03t0743650-01
Chr03	irgsp1_rep	three_prime_UTR	30519650	30520080	.	-	.	Parent=Os03t0743650-01
Chr03	irgsp1_rep	mRNA	30523073	30531098	.	+	.	ID=Os03t0743800-00;Name=Os03t0743800-00;Locus_id=Os03g0743800;Note=Similar to predicted protein.;Transcript_evidence=ab initio prediction;ORF_evidence=XP_002893142.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=Helicase%2C C-terminal (IPR001650),Sec63 domain (IPR004179),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001);TENOR=Os03t0743800-00;KEGG=Os03t0743800-00 (EC:3.6.1.-)
Chr03	irgsp1_rep	CDS	30523073	30523777	.	+	0	Parent=Os03t0743800-00
Chr03	irgsp1_rep	CDS	30523899	30525081	.	+	0	Parent=Os03t0743800-00
Chr03	irgsp1_rep	CDS	30525152	30526143	.	+	2	Parent=Os03t0743800-00
Chr03	irgsp1_rep	CDS	30527447	30527836	.	+	0	Parent=Os03t0743800-00
Chr03	irgsp1_rep	CDS	30527934	30531098	.	+	0	Parent=Os03t0743800-00
Chr03	irgsp1_rep	mRNA	30532225	30535298	.	-	.	ID=Os03t0743900-01;Name=Os03t0743900-01;Locus_id=Os03g0743900;Oryzabase Gene Symbol Synonym(s)=OsATPS%2C ATPS%2C OsaATPS%2C PAPSS;Oryzabase Gene Name Synonym(s)=ATP sulfurylase%2C bi-functional 3'-phosphoadenosine 5'-phosphosulfate synthethase;Note=Similar to ATP sulfurylase.;Transcript_evidence=AK099593 (DDBJ%2C Best hit);ORF_evidence=Q9ZWM0 (UniProt);GO=Biological Process: sulfate assimilation (GO:0000103),Molecular Function: sulfate adenylyltransferase (ATP) activity (GO:0004781);InterPro=Sulphate adenylyltransferase (IPR002650),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),PUA-like domain (IPR015947);NIAS_FLcDNA=J013043O08;Oryzabase=21104;Expression=AK099593;TENOR=Os03t0743900-01;KEGG=Os03t0743900-01 (EC:2.7.1.25%2C EC:2.7.7.4)
Chr03	irgsp1_rep	five_prime_UTR	30535279	30535298	.	-	.	Parent=Os03t0743900-01
Chr03	irgsp1_rep	CDS	30534740	30535278	.	-	0	Parent=Os03t0743900-01
Chr03	irgsp1_rep	CDS	30533269	30533674	.	-	1	Parent=Os03t0743900-01
Chr03	irgsp1_rep	CDS	30532863	30533123	.	-	0	Parent=Os03t0743900-01
Chr03	irgsp1_rep	CDS	30532600	30532686	.	-	0	Parent=Os03t0743900-01
Chr03	irgsp1_rep	CDS	30532361	30532501	.	-	0	Parent=Os03t0743900-01
Chr03	irgsp1_rep	three_prime_UTR	30532225	30532360	.	-	.	Parent=Os03t0743900-01
Chr03	irgsp1_rep	mRNA	30544468	30545337	.	-	.	ID=Os03t0744100-01;Name=Os03t0744100-01;Locus_id=Os03g0744100;Note=Similar to SKIP interacting protein 16.;Transcript_evidence=AK107163 (DDBJ%2C Best hit);ORF_evidence=B8Q8A2 (UniProt);NIAS_FLcDNA=002-124-F05;TENOR=Os03t0744100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	30545183	30545337	.	-	.	Parent=Os03t0744100-01
Chr03	irgsp1_rep	CDS	30544715	30545182	.	-	0	Parent=Os03t0744100-01
Chr03	irgsp1_rep	three_prime_UTR	30544468	30544714	.	-	.	Parent=Os03t0744100-01
Chr03	irgsp1_rep	mRNA	30544598	30545576	.	+	.	ID=Os03t0744200-01;Name=Os03t0744200-01;Locus_id=Os03g0744200;Note=Hypothetical protein.;Transcript_evidence=AK063816 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-121-H06;TENOR=Os03t0744200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	30544598	30544599	.	+	.	Parent=Os03t0744200-01
Chr03	irgsp1_rep	CDS	30544600	30544848	.	+	0	Parent=Os03t0744200-01
Chr03	irgsp1_rep	three_prime_UTR	30544849	30545576	.	+	.	Parent=Os03t0744200-01
Chr03	irgsp1_rep	mRNA	30548976	30553089	.	-	.	ID=Os03t0744300-01;Name=Os03t0744300-01;Locus_id=Os03g0744300;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK102540 (DDBJ%2C Best hit);ORF_evidence=Q10D24 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033096K05;Expression=AK102540;TENOR=Os03t0744300-01;KEGG=Os03t0744300-01
Chr03	irgsp1_rep	five_prime_UTR	30553088	30553089	.	-	.	Parent=Os03t0744300-01
Chr03	irgsp1_rep	CDS	30552987	30553087	.	-	0	Parent=Os03t0744300-01
Chr03	irgsp1_rep	CDS	30552481	30552904	.	-	1	Parent=Os03t0744300-01
Chr03	irgsp1_rep	CDS	30552227	30552408	.	-	0	Parent=Os03t0744300-01
Chr03	irgsp1_rep	CDS	30551391	30551547	.	-	1	Parent=Os03t0744300-01
Chr03	irgsp1_rep	CDS	30551087	30551314	.	-	0	Parent=Os03t0744300-01
Chr03	irgsp1_rep	CDS	30550655	30551005	.	-	0	Parent=Os03t0744300-01
Chr03	irgsp1_rep	CDS	30549871	30549972	.	-	0	Parent=Os03t0744300-01
Chr03	irgsp1_rep	CDS	30549561	30549791	.	-	0	Parent=Os03t0744300-01
Chr03	irgsp1_rep	three_prime_UTR	30548976	30549560	.	-	.	Parent=Os03t0744300-01
Chr03	irgsp1_rep	mRNA	30548831	30549897	.	-	.	ID=Os03t0744300-02;Name=Os03t0744300-02;Locus_id=Os03g0744300;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=AK067800 (DDBJ%2C Best hit);ORF_evidence=Q10D24 (UniProt);NIAS_FLcDNA=J013119M02;Expression=AK067800;TENOR=Os03t0744300-02;KEGG=Os03t0744300-02
Chr03	irgsp1_rep	CDS	30549871	30549897	.	-	0	Parent=Os03t0744300-02
Chr03	irgsp1_rep	CDS	30549561	30549791	.	-	0	Parent=Os03t0744300-02
Chr03	irgsp1_rep	three_prime_UTR	30548831	30549560	.	-	.	Parent=Os03t0744300-02
Chr03	irgsp1_rep	mRNA	30558853	30559512	.	+	.	ID=Os03t0744501-00;Name=Os03t0744501-00;Locus_id=Os03g0744501;Note=Conserved hypothetical protein.;Transcript_evidence=FP095671 (DDBJ);ORF_evidence=B8BK27 (UniProt);TENOR=Os03t0744501-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	30558853	30558981	.	+	.	Parent=Os03t0744501-00
Chr03	irgsp1_rep	CDS	30558982	30559305	.	+	0	Parent=Os03t0744501-00
Chr03	irgsp1_rep	three_prime_UTR	30559306	30559512	.	+	.	Parent=Os03t0744501-00
Chr03	irgsp1_rep	mRNA	30560821	30563674	.	-	.	ID=Os03t0744600-01;Name=Os03t0744600-01;Locus_id=Os03g0744600;Note=Similar to Ripening-associated protein (Fragment).;Transcript_evidence=AK065730 (DDBJ%2C Best hit);ORF_evidence=A2TJU6 (UniProt);InterPro=Domain of unknown function DUF3700 (IPR024286),Domain of unknown function DUF3711 (IPR024287);NIAS_FLcDNA=J013037C05;Expression=AK065730;TENOR=Os03t0744600-01;KEGG=Os03t0744600-01
Chr03	irgsp1_rep	five_prime_UTR	30563605	30563674	.	-	.	Parent=Os03t0744600-01
Chr03	irgsp1_rep	CDS	30563399	30563604	.	-	0	Parent=Os03t0744600-01
Chr03	irgsp1_rep	CDS	30561602	30561842	.	-	1	Parent=Os03t0744600-01
Chr03	irgsp1_rep	CDS	30561402	30561522	.	-	0	Parent=Os03t0744600-01
Chr03	irgsp1_rep	CDS	30561105	30561292	.	-	2	Parent=Os03t0744600-01
Chr03	irgsp1_rep	three_prime_UTR	30560821	30561104	.	-	.	Parent=Os03t0744600-01
Chr03	irgsp1_rep	mRNA	30564703	30566267	.	-	.	ID=Os03t0744650-00;Name=Os03t0744650-00;Locus_id=Os03g0744650;Oryzabase Gene Symbol Synonym(s)=OsWD40-90%2C WD40-90;Note=Similar to predicted protein.;Transcript_evidence=EU951111 (DDBJ);ORF_evidence=NP_171805.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=BEACH domain (IPR000409),WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);Oryzabase=10771;TENOR=Os03t0744650-00;KEGG=Os03t0744650-00
Chr03	irgsp1_rep	CDS	30565182	30566267	.	-	0	Parent=Os03t0744650-00
Chr03	irgsp1_rep	three_prime_UTR	30564703	30565181	.	-	.	Parent=Os03t0744650-00
Chr03	irgsp1_rep	mRNA	30574560	30582344	.	-	.	ID=Os03t0744675-00;Name=Os03t0744675-00;Locus_id=Os03g0744675;Oryzabase Gene Symbol Synonym(s)=OsWD40-90%2C WD40-90;Note=Similar to WD-40 repeat family protein / beige-related.;Transcript_evidence=AK370634 (DDBJ);ORF_evidence=NP_171805.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);Oryzabase=10771;TENOR=Os03t0744675-00
Chr03	irgsp1_rep	five_prime_UTR	30582045	30582344	.	-	.	Parent=Os03t0744675-00
Chr03	irgsp1_rep	CDS	30581812	30582044	.	-	0	Parent=Os03t0744675-00
Chr03	irgsp1_rep	CDS	30580061	30580130	.	-	1	Parent=Os03t0744675-00
Chr03	irgsp1_rep	CDS	30579880	30579965	.	-	0	Parent=Os03t0744675-00
Chr03	irgsp1_rep	CDS	30579619	30579754	.	-	1	Parent=Os03t0744675-00
Chr03	irgsp1_rep	CDS	30579476	30579532	.	-	0	Parent=Os03t0744675-00
Chr03	irgsp1_rep	CDS	30578481	30578654	.	-	0	Parent=Os03t0744675-00
Chr03	irgsp1_rep	CDS	30577542	30577733	.	-	0	Parent=Os03t0744675-00
Chr03	irgsp1_rep	CDS	30577387	30577452	.	-	0	Parent=Os03t0744675-00
Chr03	irgsp1_rep	CDS	30576951	30577065	.	-	0	Parent=Os03t0744675-00
Chr03	irgsp1_rep	CDS	30575692	30576821	.	-	2	Parent=Os03t0744675-00
Chr03	irgsp1_rep	CDS	30574560	30575477	.	-	0	Parent=Os03t0744675-00
Chr03	irgsp1_rep	mRNA	30593512	30596056	.	+	.	ID=Os03t0744700-01;Name=Os03t0744700-01;Locus_id=Os03g0744700;Note=Conserved hypothetical protein.;Transcript_evidence=AK071178 (DDBJ%2C Best hit);ORF_evidence=A3AML4 (UniProt);NIAS_FLcDNA=J023083K21;Expression=AK071178;TENOR=Os03t0744700-01;KEGG=Os03t0744700-01
Chr03	irgsp1_rep	five_prime_UTR	30593512	30593545	.	+	.	Parent=Os03t0744700-01
Chr03	irgsp1_rep	five_prime_UTR	30594291	30594373	.	+	.	Parent=Os03t0744700-01
Chr03	irgsp1_rep	CDS	30594374	30594616	.	+	0	Parent=Os03t0744700-01
Chr03	irgsp1_rep	CDS	30594699	30594818	.	+	0	Parent=Os03t0744700-01
Chr03	irgsp1_rep	CDS	30594897	30595055	.	+	0	Parent=Os03t0744700-01
Chr03	irgsp1_rep	CDS	30595374	30595546	.	+	0	Parent=Os03t0744700-01
Chr03	irgsp1_rep	CDS	30595638	30595743	.	+	1	Parent=Os03t0744700-01
Chr03	irgsp1_rep	CDS	30595833	30595862	.	+	0	Parent=Os03t0744700-01
Chr03	irgsp1_rep	three_prime_UTR	30595863	30596056	.	+	.	Parent=Os03t0744700-01
Chr03	irgsp1_rep	mRNA	30596446	30599523	.	-	.	ID=Os03t0744800-01;Name=Os03t0744800-01;Locus_id=Os03g0744800;Note=emp24/gp25L/p24 family protein.;Transcript_evidence=AK059983 (DDBJ%2C Best hit);ORF_evidence=B4FV79 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: integral to membrane (GO:0016021);InterPro=GOLD (IPR009038);NIAS_FLcDNA=006-212-F12;Expression=AK059983;TENOR=Os03t0744800-01;KEGG=Os03t0744800-01
Chr03	irgsp1_rep	five_prime_UTR	30599369	30599523	.	-	.	Parent=Os03t0744800-01
Chr03	irgsp1_rep	CDS	30599165	30599368	.	-	0	Parent=Os03t0744800-01
Chr03	irgsp1_rep	CDS	30597971	30598157	.	-	0	Parent=Os03t0744800-01
Chr03	irgsp1_rep	CDS	30597682	30597789	.	-	2	Parent=Os03t0744800-01
Chr03	irgsp1_rep	CDS	30596742	30596875	.	-	2	Parent=Os03t0744800-01
Chr03	irgsp1_rep	three_prime_UTR	30596446	30596741	.	-	.	Parent=Os03t0744800-01
Chr03	irgsp1_rep	mRNA	30596514	30599523	.	-	.	ID=Os03t0744800-02;Name=Os03t0744800-02;Locus_id=Os03g0744800;Note=Similar to emp24/gp25L/p24 protein-related.;Transcript_evidence=AK072451 (DDBJ%2C Best hit);ORF_evidence=B4FV79 (UniProt);NIAS_FLcDNA=J023120I03;Expression=AK072451;TENOR=Os03t0744800-02;KEGG=Os03t0744800-02
Chr03	irgsp1_rep	five_prime_UTR	30599369	30599523	.	-	.	Parent=Os03t0744800-02
Chr03	irgsp1_rep	CDS	30599102	30599368	.	-	0	Parent=Os03t0744800-02
Chr03	irgsp1_rep	three_prime_UTR	30597971	30599101	.	-	.	Parent=Os03t0744800-02
Chr03	irgsp1_rep	three_prime_UTR	30596514	30597789	.	-	.	Parent=Os03t0744800-02
Chr03	irgsp1_rep	mRNA	30602885	30603235	.	-	.	ID=Os03t0744900-01;Name=Os03t0744900-01;Locus_id=Os03g0744900;RAP-DB Gene Symbol Synonym(s)=OsML1;RAP-DB Gene Name Synonym(s)=mesocotyl length 1;CGSNL Gene Symbol=ML1;CGSNL Gene Name=MESOCOTYL LENGTH 1;Oryzabase Gene Symbol Synonym(s)=OsML1;Oryzabase Gene Name Synonym(s)=mesocotyl length 1;Note=Deep-sowing tolerance;Transcript_evidence=Inferred from literature;ORF_evidence=Q84MN9;Manual Curation=March 22%2C 2019;Literature_PMID=29616055;Oryzabase=22412;TENOR=Os03t0744900-00
Chr03	irgsp1_rep	CDS	30602885	30603235	.	-	0	Parent=Os03t0744900-01
Chr03	irgsp1_rep	mRNA	30604690	30607159	.	-	.	ID=Os03t0745000-01;Name=Os03t0745000-01;Locus_id=Os03g0745000;CGSNL Gene Symbol=HSFA2A;CGSNL Gene Name=HEAT STRESS TRANSCRIPTION FACTOR A2A;Oryzabase Gene Symbol Synonym(s)=HSfA2a%2C OsHsfA2a%2C OsHsf-11%2C rHsf4%2C OsHSF11%2C HSF11%2C HSF4%2C RHSP2%2C OsHsfA2a-1%2C OsHsfA2a-2%2C OsHsfA2a-3%2C OsHsfA2a-4%2C OsHsfA2a-5%2C OsHsfA2a-6%2C OsHsfA2e%2C HsfA2e;Oryzabase Gene Name Synonym(s)=Heat stress transcription factor A2a%2C Heat stress transcription factor A-2a%2C Heat stress transcription factor 11%2C Heat stress transcription factor 4%2C Heat shock protein 41%2C Heat shock transcription factorA2;Note=Similar to Heat stress transcription factor A-2a.;Transcript_evidence=AK069579 (DDBJ%2C Best hit);ORF_evidence=Q84MN7 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Heat shock factor (HSF)-type%2C DNA-binding (IPR000232),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=J023022C13;Oryzabase=8548;TENOR=Os03t0745000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	30607074	30607159	.	-	.	Parent=Os03t0745000-01
Chr03	irgsp1_rep	five_prime_UTR	30606474	30606644	.	-	.	Parent=Os03t0745000-01
Chr03	irgsp1_rep	CDS	30606069	30606473	.	-	0	Parent=Os03t0745000-01
Chr03	irgsp1_rep	three_prime_UTR	30604690	30606068	.	-	.	Parent=Os03t0745000-01
Chr03	irgsp1_rep	mRNA	30604067	30606372	.	-	.	ID=Os03t0745000-02;Name=Os03t0745000-02;Locus_id=Os03g0745000;CGSNL Gene Symbol=HSFA2A;CGSNL Gene Name=HEAT STRESS TRANSCRIPTION FACTOR A2A;Oryzabase Gene Symbol Synonym(s)=HSfA2a%2C OsHsfA2a%2C OsHsf-11%2C rHsf4%2C OsHSF11%2C HSF11%2C HSF4%2C RHSP2%2C OsHsfA2a-1%2C OsHsfA2a-2%2C OsHsfA2a-3%2C OsHsfA2a-4%2C OsHsfA2a-5%2C OsHsfA2a-6%2C OsHsfA2e%2C HsfA2e;Oryzabase Gene Name Synonym(s)=Heat stress transcription factor A2a%2C Heat stress transcription factor A-2a%2C Heat stress transcription factor 11%2C Heat stress transcription factor 4%2C Heat shock protein 41%2C Heat shock transcription factorA2;Note=Similar to Heat stress transcription factor A-2a.;Transcript_evidence=AK109590 (DDBJ%2C Best hit);ORF_evidence=Q84MN7 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Heat shock factor (HSF)-type%2C DNA-binding (IPR000232),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=002-137-C01;Oryzabase=8548;Expression=AK109590;TENOR=Os03t0745000-02;KEGG=Os03t0745000-02
Chr03	irgsp1_rep	five_prime_UTR	30606372	30606372	.	-	.	Parent=Os03t0745000-02
Chr03	irgsp1_rep	CDS	30606138	30606371	.	-	0	Parent=Os03t0745000-02
Chr03	irgsp1_rep	CDS	30606031	30606048	.	-	0	Parent=Os03t0745000-02
Chr03	irgsp1_rep	three_prime_UTR	30604067	30606030	.	-	.	Parent=Os03t0745000-02
Chr03	irgsp1_rep	mRNA	30609895	30611495	.	-	.	ID=Os03t0745100-00;Name=Os03t0745100-00;Locus_id=Os03g0745100;Note=Similar to cytokinin-O-glucosyltransferase 1.;Transcript_evidence=CT835126 (DDBJ%2C Best hit);ORF_evidence=NP_001149762.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os03t0745100-00;KEGG=Os03t0745100-00
Chr03	irgsp1_rep	CDS	30610735	30611495	.	-	0	Parent=Os03t0745100-00
Chr03	irgsp1_rep	CDS	30609984	30610026	.	-	1	Parent=Os03t0745100-00
Chr03	irgsp1_rep	three_prime_UTR	30609895	30609983	.	-	.	Parent=Os03t0745100-00
Chr03	irgsp1_rep	mRNA	30626684	30631356	.	+	.	ID=Os03t0745400-01;Name=Os03t0745400-01;Locus_id=Os03g0745400;Note=Conserved hypothetical protein.;Transcript_evidence=AK072255 (DDBJ%2C Best hit),AK288545 (DDBJ%2C Best hit);ORF_evidence=Q84MN1 (UniProt);NIAS_FLcDNA=J023008J03,J090046H01;TENOR=Os03t0745400-01
Chr03	irgsp1_rep	five_prime_UTR	30626684	30626686	.	+	.	Parent=Os03t0745400-01
Chr03	irgsp1_rep	CDS	30626687	30626896	.	+	0	Parent=Os03t0745400-01
Chr03	irgsp1_rep	CDS	30626993	30627148	.	+	0	Parent=Os03t0745400-01
Chr03	irgsp1_rep	three_prime_UTR	30627149	30627251	.	+	.	Parent=Os03t0745400-01
Chr03	irgsp1_rep	three_prime_UTR	30627362	30627609	.	+	.	Parent=Os03t0745400-01
Chr03	irgsp1_rep	three_prime_UTR	30628885	30629178	.	+	.	Parent=Os03t0745400-01
Chr03	irgsp1_rep	three_prime_UTR	30629361	30629546	.	+	.	Parent=Os03t0745400-01
Chr03	irgsp1_rep	three_prime_UTR	30629861	30629967	.	+	.	Parent=Os03t0745400-01
Chr03	irgsp1_rep	three_prime_UTR	30630147	30631356	.	+	.	Parent=Os03t0745400-01
Chr03	irgsp1_rep	mRNA	30626693	30629545	.	+	.	ID=Os03t0745400-02;Name=Os03t0745400-02;Locus_id=Os03g0745400;Note=Hypothetical conserved gene.;Transcript_evidence=AK071701 (DDBJ%2C Best hit);ORF_evidence=Q84MN1 (UniProt);NIAS_FLcDNA=J023109L16;Expression=AK071701;TENOR=Os03t0745400-02;KEGG=Os03t0745400-02
Chr03	irgsp1_rep	CDS	30626693	30627148	.	+	0	Parent=Os03t0745400-02
Chr03	irgsp1_rep	three_prime_UTR	30627149	30627251	.	+	.	Parent=Os03t0745400-02
Chr03	irgsp1_rep	three_prime_UTR	30627362	30627609	.	+	.	Parent=Os03t0745400-02
Chr03	irgsp1_rep	three_prime_UTR	30628885	30629178	.	+	.	Parent=Os03t0745400-02
Chr03	irgsp1_rep	three_prime_UTR	30629361	30629545	.	+	.	Parent=Os03t0745400-02
Chr03	irgsp1_rep	mRNA	30633708	30636490	.	+	.	ID=Os03t0745550-01;Name=Os03t0745550-01;Locus_id=Os03g0745550;Note=Conserved hypothetical protein.;Transcript_evidence=AK241058 (DDBJ%2C Best hit);ORF_evidence=Q94GN2 (UniProt);NIAS_FLcDNA=J065064B21;TENOR=Os03t0745550-01;KEGG=Os03t0745550-01
Chr03	irgsp1_rep	five_prime_UTR	30633708	30633751	.	+	.	Parent=Os03t0745550-01
Chr03	irgsp1_rep	five_prime_UTR	30633829	30633963	.	+	.	Parent=Os03t0745550-01
Chr03	irgsp1_rep	CDS	30633964	30634107	.	+	0	Parent=Os03t0745550-01
Chr03	irgsp1_rep	CDS	30635502	30635570	.	+	0	Parent=Os03t0745550-01
Chr03	irgsp1_rep	three_prime_UTR	30635571	30635694	.	+	.	Parent=Os03t0745550-01
Chr03	irgsp1_rep	three_prime_UTR	30636002	30636192	.	+	.	Parent=Os03t0745550-01
Chr03	irgsp1_rep	three_prime_UTR	30636295	30636490	.	+	.	Parent=Os03t0745550-01
Chr03	irgsp1_rep	mRNA	30639024	30640119	.	+	.	ID=Os03t0745600-01;Name=Os03t0745600-01;Locus_id=Os03g0745600;Note=Uncharacterised protein family UPF0005 domain containing protein.;Transcript_evidence=AK242300 (DDBJ%2C Best hit);ORF_evidence=NP_001151352.1 (RefSeq);InterPro=Inhibitor of apoptosis-promoting Bax1-related (IPR006214);NIAS_FLcDNA=J075192P11;TENOR=Os03t0745600-01;KEGG=Os03t0745600-01
Chr03	irgsp1_rep	five_prime_UTR	30639024	30639119	.	+	.	Parent=Os03t0745600-01
Chr03	irgsp1_rep	CDS	30639120	30639390	.	+	0	Parent=Os03t0745600-01
Chr03	irgsp1_rep	CDS	30639488	30639966	.	+	2	Parent=Os03t0745600-01
Chr03	irgsp1_rep	three_prime_UTR	30639967	30640119	.	+	.	Parent=Os03t0745600-01
Chr03	irgsp1_rep	mRNA	30641590	30644916	.	+	.	ID=Os03t0745700-00;Name=Os03t0745700-00;Locus_id=Os03g0745700;Oryzabase Gene Symbol Synonym(s)=OsSTA114;Note=Similar to ATP binding protein.;Transcript_evidence=AK369859 (DDBJ);ORF_evidence=B6T4Q9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);Oryzabase=19405;TENOR=Os03t0745700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	30641590	30641938	.	+	0	Parent=Os03t0745700-00
Chr03	irgsp1_rep	CDS	30643864	30643976	.	+	2	Parent=Os03t0745700-00
Chr03	irgsp1_rep	CDS	30644058	30644600	.	+	0	Parent=Os03t0745700-00
Chr03	irgsp1_rep	CDS	30644698	30644916	.	+	0	Parent=Os03t0745700-00
Chr03	irgsp1_rep	mRNA	30659139	30660915	.	+	.	ID=Os03t0746000-01;Name=Os03t0746000-01;Locus_id=Os03g0746000;Note=Hypothetical protein.;Transcript_evidence=AK073682 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033057K05;Expression=AK073682;TENOR=Os03t0746000-01;KEGG=Os03t0746000-01
Chr03	irgsp1_rep	five_prime_UTR	30659139	30659479	.	+	.	Parent=Os03t0746000-01
Chr03	irgsp1_rep	CDS	30659480	30660016	.	+	0	Parent=Os03t0746000-01
Chr03	irgsp1_rep	three_prime_UTR	30660017	30660915	.	+	.	Parent=Os03t0746000-01
Chr03	irgsp1_rep	mRNA	30659180	30660924	.	+	.	ID=Os03t0746000-02;Name=Os03t0746000-02;Locus_id=Os03g0746000;Note=Hypothetical protein.;Transcript_evidence=AK111472 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-183-F02;Expression=AK111472;TENOR=Os03t0746000-02;KEGG=Os03t0746000-02
Chr03	irgsp1_rep	five_prime_UTR	30659180	30659479	.	+	.	Parent=Os03t0746000-02
Chr03	irgsp1_rep	CDS	30659480	30660016	.	+	0	Parent=Os03t0746000-02
Chr03	irgsp1_rep	three_prime_UTR	30660017	30660924	.	+	.	Parent=Os03t0746000-02
Chr03	irgsp1_rep	mRNA	30676787	30679206	.	+	.	ID=Os03t0746400-01;Name=Os03t0746400-01;Locus_id=Os03g0746400;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK063445 (DDBJ%2C Best hit);ORF_evidence=Q94GP2 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-115-F05;Expression=AK063445;TENOR=Os03t0746400-01;KEGG=Os03t0746400-01
Chr03	irgsp1_rep	five_prime_UTR	30676787	30677219	.	+	.	Parent=Os03t0746400-01
Chr03	irgsp1_rep	CDS	30677220	30679061	.	+	0	Parent=Os03t0746400-01
Chr03	irgsp1_rep	three_prime_UTR	30679062	30679206	.	+	.	Parent=Os03t0746400-01
Chr03	irgsp1_rep	mRNA	30676843	30678494	.	+	.	ID=Os03t0746400-02;Name=Os03t0746400-02;Locus_id=Os03g0746400;Note=Hypothetical conserved gene.;Transcript_evidence=AK070923 (DDBJ%2C Best hit);ORF_evidence=Q10D01 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J023069E15;Expression=AK070923;TENOR=Os03t0746400-02;KEGG=Os03t0746400-02
Chr03	irgsp1_rep	five_prime_UTR	30676843	30677396	.	+	.	Parent=Os03t0746400-02
Chr03	irgsp1_rep	CDS	30677397	30678494	.	+	0	Parent=Os03t0746400-02
Chr03	irgsp1_rep	mRNA	30679685	30689225	.	-	.	ID=Os03t0746500-01;Name=Os03t0746500-01;Locus_id=Os03g0746500;RAP-DB Gene Symbol Synonym(s)=OsSUV3%2C SUV3;RAP-DB Gene Name Synonym(s)=SUV3 helicase%2C suppressor of Var 3;Oryzabase Gene Symbol Synonym(s)=OsSUV3%2C SUV3;Oryzabase Gene Name Synonym(s)=SUV3 helicase%2C suppressor of Var 3;Note=NTP-dependent DNA/RNA helicase%2C Salinity stress tolerance;Transcript_evidence=GQ982584;ORF_evidence=Q10D00;GO=Molecular Function: hydrolase activity%2C acting on acid anhydrides (GO:0016817);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),Helicase%2C C-terminal (IPR001650),Mitochondrial degradasome RNA helicase subunit%2C C-terminal domain (IPR022192);Manual Curation=February 27%2C 2014;Literature_PMID=23808500;Oryzabase=13479;TENOR=Os03t0746500-01
Chr03	irgsp1_rep	five_prime_UTR	30689038	30689225	.	-	.	Parent=Os03t0746500-01
Chr03	irgsp1_rep	CDS	30688965	30689037	.	-	0	Parent=Os03t0746500-01
Chr03	irgsp1_rep	CDS	30688321	30688438	.	-	2	Parent=Os03t0746500-01
Chr03	irgsp1_rep	CDS	30687859	30687980	.	-	1	Parent=Os03t0746500-01
Chr03	irgsp1_rep	CDS	30687588	30687778	.	-	2	Parent=Os03t0746500-01
Chr03	irgsp1_rep	CDS	30687279	30687419	.	-	0	Parent=Os03t0746500-01
Chr03	irgsp1_rep	CDS	30686529	30686651	.	-	0	Parent=Os03t0746500-01
Chr03	irgsp1_rep	CDS	30685293	30685370	.	-	0	Parent=Os03t0746500-01
Chr03	irgsp1_rep	CDS	30684593	30684761	.	-	0	Parent=Os03t0746500-01
Chr03	irgsp1_rep	CDS	30684350	30684462	.	-	2	Parent=Os03t0746500-01
Chr03	irgsp1_rep	CDS	30684174	30684254	.	-	0	Parent=Os03t0746500-01
Chr03	irgsp1_rep	CDS	30683603	30683668	.	-	0	Parent=Os03t0746500-01
Chr03	irgsp1_rep	CDS	30681699	30681763	.	-	0	Parent=Os03t0746500-01
Chr03	irgsp1_rep	CDS	30681501	30681546	.	-	1	Parent=Os03t0746500-01
Chr03	irgsp1_rep	CDS	30681301	30681417	.	-	0	Parent=Os03t0746500-01
Chr03	irgsp1_rep	CDS	30680927	30681018	.	-	0	Parent=Os03t0746500-01
Chr03	irgsp1_rep	CDS	30680737	30680841	.	-	1	Parent=Os03t0746500-01
Chr03	irgsp1_rep	CDS	30680167	30680206	.	-	1	Parent=Os03t0746500-01
Chr03	irgsp1_rep	three_prime_UTR	30679685	30680166	.	-	.	Parent=Os03t0746500-01
Chr03	irgsp1_rep	mRNA	30684690	30687349	.	-	.	ID=Os03t0746500-02;Name=Os03t0746500-02;Locus_id=Os03g0746500;Oryzabase Gene Symbol Synonym(s)=OsSUV3%2C SUV3;Oryzabase Gene Name Synonym(s)=SUV3 helicase%2C suppressor of Var 3;Note=Similar to predicted protein.;Transcript_evidence=AK058367 (DDBJ%2C Best hit);ORF_evidence=NP_193215.2 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524);InterPro=Helicase%2C C-terminal (IPR001650);NIAS_FLcDNA=001-014-G01;Oryzabase=13479;TENOR=Os03t0746500-02;KEGG=Os03t0746500-02
Chr03	irgsp1_rep	five_prime_UTR	30687348	30687349	.	-	.	Parent=Os03t0746500-02
Chr03	irgsp1_rep	CDS	30687279	30687347	.	-	0	Parent=Os03t0746500-02
Chr03	irgsp1_rep	CDS	30686529	30686651	.	-	0	Parent=Os03t0746500-02
Chr03	irgsp1_rep	CDS	30685293	30685370	.	-	0	Parent=Os03t0746500-02
Chr03	irgsp1_rep	CDS	30684690	30684761	.	-	0	Parent=Os03t0746500-02
Chr03	irgsp1_rep	mRNA	30689477	30692481	.	+	.	ID=Os03t0746600-01;Name=Os03t0746600-01;Locus_id=Os03g0746600;Oryzabase Gene Symbol Synonym(s)=OsWD40-91;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK069559 (DDBJ%2C Best hit);ORF_evidence=B6TCK6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),Autophagy-related protein 16 (IPR013923),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J023019N18;Oryzabase=10772;Expression=AK069559;TENOR=Os03t0746600-01;KEGG=Os03t0746600-01
Chr03	irgsp1_rep	five_prime_UTR	30689477	30689625	.	+	.	Parent=Os03t0746600-01
Chr03	irgsp1_rep	CDS	30689626	30689627	.	+	0	Parent=Os03t0746600-01
Chr03	irgsp1_rep	CDS	30689714	30689846	.	+	1	Parent=Os03t0746600-01
Chr03	irgsp1_rep	CDS	30690087	30690268	.	+	0	Parent=Os03t0746600-01
Chr03	irgsp1_rep	CDS	30690350	30690545	.	+	1	Parent=Os03t0746600-01
Chr03	irgsp1_rep	CDS	30691135	30692157	.	+	0	Parent=Os03t0746600-01
Chr03	irgsp1_rep	three_prime_UTR	30692158	30692481	.	+	.	Parent=Os03t0746600-01
Chr03	irgsp1_rep	mRNA	30694418	30695954	.	-	.	ID=Os03t0746700-01;Name=Os03t0746700-01;Locus_id=Os03g0746700;Note=Conserved hypothetical protein.;Transcript_evidence=AK068199 (DDBJ%2C Best hit);ORF_evidence=A2XLY2 (UniProt);NIAS_FLcDNA=J013136N09;Expression=AK068199;TENOR=Os03t0746700-01;KEGG=Os03t0746700-01
Chr03	irgsp1_rep	five_prime_UTR	30695480	30695954	.	-	.	Parent=Os03t0746700-01
Chr03	irgsp1_rep	CDS	30694637	30695479	.	-	0	Parent=Os03t0746700-01
Chr03	irgsp1_rep	three_prime_UTR	30694418	30694636	.	-	.	Parent=Os03t0746700-01
Chr03	irgsp1_rep	mRNA	30701249	30704661	.	-	.	ID=Os03t0746800-01;Name=Os03t0746800-01;Locus_id=Os03g0746800;Oryzabase Gene Symbol Synonym(s)=OsWD40-92;Note=WD-40 repeat containing protein.;Transcript_evidence=AK101718 (DDBJ%2C Best hit);ORF_evidence=B6TK73 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J033060O11;Oryzabase=10773;Expression=AK101718;TENOR=Os03t0746800-01;KEGG=Os03t0746800-01
Chr03	irgsp1_rep	five_prime_UTR	30704572	30704661	.	-	.	Parent=Os03t0746800-01
Chr03	irgsp1_rep	CDS	30704435	30704571	.	-	0	Parent=Os03t0746800-01
Chr03	irgsp1_rep	CDS	30703913	30704077	.	-	1	Parent=Os03t0746800-01
Chr03	irgsp1_rep	CDS	30703459	30703639	.	-	1	Parent=Os03t0746800-01
Chr03	irgsp1_rep	CDS	30703276	30703332	.	-	0	Parent=Os03t0746800-01
Chr03	irgsp1_rep	CDS	30703114	30703184	.	-	0	Parent=Os03t0746800-01
Chr03	irgsp1_rep	CDS	30702867	30702942	.	-	1	Parent=Os03t0746800-01
Chr03	irgsp1_rep	CDS	30702720	30702779	.	-	0	Parent=Os03t0746800-01
Chr03	irgsp1_rep	CDS	30702495	30702598	.	-	0	Parent=Os03t0746800-01
Chr03	irgsp1_rep	CDS	30702352	30702412	.	-	1	Parent=Os03t0746800-01
Chr03	irgsp1_rep	CDS	30701558	30701953	.	-	0	Parent=Os03t0746800-01
Chr03	irgsp1_rep	three_prime_UTR	30701249	30701557	.	-	.	Parent=Os03t0746800-01
Chr03	irgsp1_rep	mRNA	30707829	30708737	.	+	.	ID=Os03t0746900-01;Name=Os03t0746900-01;Locus_id=Os03g0746900;Note=Protein of unknown function DUF1677%2C plant family protein.;Transcript_evidence=AK107396 (DDBJ%2C Best hit);ORF_evidence=A2XLY4 (UniProt);InterPro=Protein of unknown function DUF1677%2C plant (IPR012876);NIAS_FLcDNA=002-127-D05;Expression=AK107396;TENOR=Os03t0746900-01;KEGG=Os03t0746900-01
Chr03	irgsp1_rep	five_prime_UTR	30707829	30708025	.	+	.	Parent=Os03t0746900-01
Chr03	irgsp1_rep	CDS	30708026	30708436	.	+	0	Parent=Os03t0746900-01
Chr03	irgsp1_rep	three_prime_UTR	30708437	30708737	.	+	.	Parent=Os03t0746900-01
Chr03	irgsp1_rep	mRNA	30723352	30725454	.	+	.	ID=Os03t0747100-00;Name=Os03t0747100-00;Locus_id=Os03g0747100;Note=ERG2/sigma1 receptor-like domain containing protein.;Transcript_evidence=EU970984 (DDBJ);ORF_evidence=A2XLY6 (UniProt);GO=Biological Process: ergosterol biosynthetic process (GO:0006696),Cellular Component: endoplasmic reticulum (GO:0005783),Molecular Function: C-8 sterol isomerase activity (GO:0000247);InterPro=ERG2/sigma1 receptor-like (IPR006716);TENOR=Os03t0747100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	30723352	30724152	.	+	0	Parent=Os03t0747100-00
Chr03	irgsp1_rep	CDS	30724241	30724393	.	+	0	Parent=Os03t0747100-00
Chr03	irgsp1_rep	CDS	30725093	30725365	.	+	0	Parent=Os03t0747100-00
Chr03	irgsp1_rep	three_prime_UTR	30725366	30725454	.	+	.	Parent=Os03t0747100-00
Chr03	irgsp1_rep	mRNA	30727013	30731434	.	-	.	ID=Os03t0747200-01;Name=Os03t0747200-01;Locus_id=Os03g0747200;Note=Protein of unknown function DUF1423%2C plant domain containing protein.;Transcript_evidence=AK102631 (DDBJ%2C Best hit);ORF_evidence=Q10CY9 (UniProt);InterPro=Protein of unknown function DUF1423%2C plant (IPR004082);NIAS_FLcDNA=J033099L17;TENOR=Os03t0747200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	30731376	30731434	.	-	0	Parent=Os03t0747200-01
Chr03	irgsp1_rep	CDS	30730813	30730985	.	-	1	Parent=Os03t0747200-01
Chr03	irgsp1_rep	CDS	30728350	30728888	.	-	2	Parent=Os03t0747200-01
Chr03	irgsp1_rep	CDS	30728154	30728226	.	-	0	Parent=Os03t0747200-01
Chr03	irgsp1_rep	CDS	30727166	30727680	.	-	2	Parent=Os03t0747200-01
Chr03	irgsp1_rep	three_prime_UTR	30727013	30727165	.	-	.	Parent=Os03t0747200-01
Chr03	irgsp1_rep	mRNA	30736468	30740258	.	+	.	ID=Os03t0747300-01;Name=Os03t0747300-01;Locus_id=Os03g0747300;Note=Protein of unknown function DUF124 family protein.;Transcript_evidence=AK071214 (DDBJ%2C Best hit),AK060347 (DDBJ%2C Best hit);ORF_evidence=A2XLY9 (UniProt);InterPro=Protein of unknown function DUF124 (IPR002838),Tryptophan RNA-binding attenuator protein-like (IPR016031);NIAS_FLcDNA=J023082F22,001-008-E10;TENOR=Os03t0747300-01
Chr03	irgsp1_rep	five_prime_UTR	30736468	30736586	.	+	.	Parent=Os03t0747300-01
Chr03	irgsp1_rep	CDS	30736587	30736634	.	+	0	Parent=Os03t0747300-01
Chr03	irgsp1_rep	CDS	30736827	30736886	.	+	0	Parent=Os03t0747300-01
Chr03	irgsp1_rep	CDS	30736988	30737027	.	+	0	Parent=Os03t0747300-01
Chr03	irgsp1_rep	CDS	30737615	30737793	.	+	2	Parent=Os03t0747300-01
Chr03	irgsp1_rep	CDS	30738451	30738489	.	+	0	Parent=Os03t0747300-01
Chr03	irgsp1_rep	CDS	30738565	30738651	.	+	0	Parent=Os03t0747300-01
Chr03	irgsp1_rep	CDS	30738772	30738832	.	+	0	Parent=Os03t0747300-01
Chr03	irgsp1_rep	CDS	30739293	30739417	.	+	2	Parent=Os03t0747300-01
Chr03	irgsp1_rep	CDS	30739511	30739602	.	+	0	Parent=Os03t0747300-01
Chr03	irgsp1_rep	CDS	30739692	30739809	.	+	1	Parent=Os03t0747300-01
Chr03	irgsp1_rep	three_prime_UTR	30739810	30740258	.	+	.	Parent=Os03t0747300-01
Chr03	irgsp1_rep	mRNA	30740904	30741773	.	-	.	ID=Os03t0747400-00;Name=Os03t0747400-00;Locus_id=Os03g0747400;CGSNL Gene Symbol=LEA31;CGSNL Gene Name=LATE EMBRYOGENESIS ABUNDANT PROTEIN 31;Oryzabase Gene Symbol Synonym(s)=OsLEA31;Oryzabase Gene Name Synonym(s)=late embryogenesis abundant protein 31;Note=Similar to Seed maturation protein.;Transcript_evidence=EU976458 (DDBJ);ORF_evidence=Q10CY6 (UniProt);InterPro=Seed maturation protein (IPR007011);Oryzabase=10190;TENOR=Os03t0747400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	30741768	30741773	.	-	.	Parent=Os03t0747400-00
Chr03	irgsp1_rep	CDS	30740904	30741767	.	-	0	Parent=Os03t0747400-00
Chr03	irgsp1_rep	mRNA	30743107	30743972	.	-	.	ID=Os03t0747500-01;Name=Os03t0747500-01;Locus_id=Os03g0747500;CGSNL Gene Symbol=LEA32;CGSNL Gene Name=LATE EMBRYOGENESIS ABUNDANT PROTEIN 32;Oryzabase Gene Symbol Synonym(s)=OsLEA32%2C OsEnS-55;Oryzabase Gene Name Synonym(s)=late embryogenesis abundant protein 32%2C endosperm-specific gene 55;Note=Seed maturation protein domain containing protein.;Transcript_evidence=AK108009 (DDBJ%2C Best hit);ORF_evidence=A2XLZ1 (UniProt);InterPro=Seed maturation protein (IPR007011);NIAS_FLcDNA=002-135-H02;Oryzabase=10191;Expression=AK108009;TENOR=Os03t0747500-01;KEGG=Os03t0747500-01
Chr03	irgsp1_rep	five_prime_UTR	30743961	30743972	.	-	.	Parent=Os03t0747500-01
Chr03	irgsp1_rep	CDS	30743562	30743960	.	-	0	Parent=Os03t0747500-01
Chr03	irgsp1_rep	CDS	30743225	30743470	.	-	0	Parent=Os03t0747500-01
Chr03	irgsp1_rep	three_prime_UTR	30743107	30743224	.	-	.	Parent=Os03t0747500-01
Chr03	irgsp1_rep	mRNA	30747595	30749218	.	+	.	ID=Os03t0747600-01;Name=Os03t0747600-01;Locus_id=Os03g0747600;Note=Similar to Acetyltransferase%2C GNAT family protein%2C expressed.;Transcript_evidence=AK106588 (DDBJ%2C Best hit);ORF_evidence=Q10CY0 (UniProt);NIAS_FLcDNA=002-111-F03;TENOR=Os03t0747600-01
Chr03	irgsp1_rep	five_prime_UTR	30747595	30747818	.	+	.	Parent=Os03t0747600-01
Chr03	irgsp1_rep	CDS	30747819	30749218	.	+	0	Parent=Os03t0747600-01
Chr03	irgsp1_rep	mRNA	30749030	30755670	.	+	.	ID=Os03t0747600-02;Name=Os03t0747600-02;Locus_id=Os03g0747600;Note=Similar to Acetyltransferase%2C GNAT family protein%2C expressed.;Transcript_evidence=AK068410 (DDBJ%2C Best hit);ORF_evidence=Q10CY0 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: protein binding (GO:0005515),Molecular Function: N-acetyltransferase activity (GO:0008080),Molecular Function: zinc ion binding (GO:0008270);InterPro=GCN5-related N-acetyltransferase (GNAT) domain (IPR000182),Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Acyl-CoA N-acyltransferase (IPR016181),Zinc finger%2C PHD-type%2C conserved site (IPR019786),Zinc finger%2C PHD-finger (IPR019787);NIAS_FLcDNA=J013149G09;TENOR=Os03t0747600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	30749030	30749030	.	+	.	Parent=Os03t0747600-02
Chr03	irgsp1_rep	CDS	30749031	30750317	.	+	0	Parent=Os03t0747600-02
Chr03	irgsp1_rep	CDS	30750601	30750733	.	+	0	Parent=Os03t0747600-02
Chr03	irgsp1_rep	CDS	30750897	30750985	.	+	2	Parent=Os03t0747600-02
Chr03	irgsp1_rep	CDS	30751913	30752151	.	+	0	Parent=Os03t0747600-02
Chr03	irgsp1_rep	CDS	30753319	30753405	.	+	1	Parent=Os03t0747600-02
Chr03	irgsp1_rep	CDS	30753772	30753871	.	+	1	Parent=Os03t0747600-02
Chr03	irgsp1_rep	CDS	30754359	30754572	.	+	0	Parent=Os03t0747600-02
Chr03	irgsp1_rep	CDS	30754657	30754800	.	+	2	Parent=Os03t0747600-02
Chr03	irgsp1_rep	CDS	30755124	30755128	.	+	2	Parent=Os03t0747600-02
Chr03	irgsp1_rep	three_prime_UTR	30755129	30755670	.	+	.	Parent=Os03t0747600-02
Chr03	irgsp1_rep	mRNA	30755832	30757457	.	-	.	ID=Os03t0747700-01;Name=Os03t0747700-01;Locus_id=Os03g0747700;Note=Similar to photosystem II 11 kDa protein-related.;Transcript_evidence=AK058795 (DDBJ%2C Best hit);ORF_evidence=NP_563737.1 (RefSeq);NIAS_FLcDNA=001-002-H05;Expression=AK058795;TENOR=Os03t0747700-01;KEGG=Os03t0747700-01
Chr03	irgsp1_rep	five_prime_UTR	30757357	30757457	.	-	.	Parent=Os03t0747700-01
Chr03	irgsp1_rep	CDS	30757215	30757356	.	-	0	Parent=Os03t0747700-01
Chr03	irgsp1_rep	CDS	30756759	30757117	.	-	2	Parent=Os03t0747700-01
Chr03	irgsp1_rep	CDS	30755978	30756115	.	-	0	Parent=Os03t0747700-01
Chr03	irgsp1_rep	three_prime_UTR	30755832	30755977	.	-	.	Parent=Os03t0747700-01
Chr03	irgsp1_rep	mRNA	30760118	30763677	.	+	.	ID=Os03t0747800-01;Name=Os03t0747800-01;Locus_id=Os03g0747800;RAP-DB Gene Symbol Synonym(s)=OsOASTL-A1;RAP-DB Gene Name Synonym(s)=O-acetylserine(thiol) lyase A1;CGSNL Gene Symbol=RCS3;CGSNL Gene Name=CYSTEINE SYNTHASE 3;Oryzabase Gene Symbol Synonym(s)=rcs3;Oryzabase Gene Name Synonym(s)=rice cysteine synthase (sulfer%2C nitrogen and light response)-3%2C rice cysteine synthase-3;Note=O-acetylserine(thiol) lyase%2C Cysteine synthase%2C Cysteine biosynthesis%2C Arsenic detoxification;Transcript_evidence=AK071279;ORF_evidence=Q9XEA8;GO=Biological Process: cysteine biosynthetic process from serine (GO:0006535),Molecular Function: cysteine synthase activity (GO:0004124);InterPro=Tryptophan synthase beta subunit-like PLP-dependent enzyme (IPR036052),Cysteine synthase (IPR005856),Cysteine synthase CysK (IPR005859),Pyridoxal-phosphate dependent enzyme (IPR001926),Cysteine synthase/cystathionine beta-synthase%2C pyridoxal-phosphate attachment site (IPR001216);NIAS_FLcDNA=J023084C02;Manual Curation=March 6%2C 2020;Literature_PMID=32129444;Oryzabase=6799;Expression=AK071279;TENOR=Os03t0747800-01;KEGG=Os03t0747800-01 (EC:2.5.1.47);Subcellular location=cytosol (GO:0005829)
Chr03	irgsp1_rep	five_prime_UTR	30760118	30760199	.	+	.	Parent=Os03t0747800-01
Chr03	irgsp1_rep	five_prime_UTR	30760643	30760672	.	+	.	Parent=Os03t0747800-01
Chr03	irgsp1_rep	CDS	30760673	30760714	.	+	0	Parent=Os03t0747800-01
Chr03	irgsp1_rep	CDS	30760821	30760930	.	+	0	Parent=Os03t0747800-01
Chr03	irgsp1_rep	CDS	30761013	30761070	.	+	1	Parent=Os03t0747800-01
Chr03	irgsp1_rep	CDS	30761495	30761758	.	+	0	Parent=Os03t0747800-01
Chr03	irgsp1_rep	CDS	30761843	30761980	.	+	0	Parent=Os03t0747800-01
Chr03	irgsp1_rep	CDS	30762304	30762355	.	+	0	Parent=Os03t0747800-01
Chr03	irgsp1_rep	CDS	30762565	30762644	.	+	2	Parent=Os03t0747800-01
Chr03	irgsp1_rep	CDS	30762969	30763028	.	+	0	Parent=Os03t0747800-01
Chr03	irgsp1_rep	CDS	30763124	30763204	.	+	0	Parent=Os03t0747800-01
Chr03	irgsp1_rep	CDS	30763339	30763431	.	+	0	Parent=Os03t0747800-01
Chr03	irgsp1_rep	three_prime_UTR	30763432	30763677	.	+	.	Parent=Os03t0747800-01
Chr03	irgsp1_rep	mRNA	30760846	30761899	.	-	.	ID=Os03t0747850-00;Name=Os03t0747850-00;Locus_id=Os03g0747850;Note=Hypothetical gene.;Transcript_evidence=AJ622893 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0747850-00;KEGG=Os03t0747850-00
Chr03	irgsp1_rep	CDS	30761849	30761899	.	-	0	Parent=Os03t0747850-00
Chr03	irgsp1_rep	CDS	30761570	30761761	.	-	0	Parent=Os03t0747850-00
Chr03	irgsp1_rep	three_prime_UTR	30761462	30761569	.	-	.	Parent=Os03t0747850-00
Chr03	irgsp1_rep	three_prime_UTR	30760846	30760961	.	-	.	Parent=Os03t0747850-00
Chr03	irgsp1_rep	mRNA	30764587	30773947	.	+	.	ID=Os03t0747900-00;Name=Os03t0747900-00;Locus_id=Os03g0747900;Oryzabase Gene Symbol Synonym(s)=OsMyoXIE%2C OsMyoXIE-1%2C OsMyoXIE-2%2C OsMyoXIE-3;Oryzabase Gene Name Synonym(s)=Myosin XIE%2C Myosin class XI E;Note=Similar to Myosin heavy chain class XI E1 protein.;Transcript_evidence=AY374515 (DDBJ%2C Best hit);ORF_evidence=Q6UAL1 (UniProt);GO=Cellular Component: myosin complex (GO:0016459),Molecular Function: motor activity (GO:0003774),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=IQ motif%2C EF-hand binding site (IPR000048),Myosin head%2C motor domain (IPR001609),Dilute (IPR002710),Myosin%2C N-terminal%2C SH3-like (IPR004009),Dil domain (IPR018444);Oryzabase=14049;Expression=AY374515;TENOR=Os03t0747900-00;KEGG=Os03t0747900-00
Chr03	irgsp1_rep	five_prime_UTR	30764587	30764587	.	+	.	Parent=Os03t0747900-00
Chr03	irgsp1_rep	CDS	30764588	30764716	.	+	0	Parent=Os03t0747900-00
Chr03	irgsp1_rep	CDS	30764936	30765079	.	+	0	Parent=Os03t0747900-00
Chr03	irgsp1_rep	CDS	30765185	30765330	.	+	0	Parent=Os03t0747900-00
Chr03	irgsp1_rep	CDS	30765442	30765598	.	+	1	Parent=Os03t0747900-00
Chr03	irgsp1_rep	CDS	30765697	30765755	.	+	0	Parent=Os03t0747900-00
Chr03	irgsp1_rep	CDS	30765840	30765999	.	+	1	Parent=Os03t0747900-00
Chr03	irgsp1_rep	CDS	30766094	30766243	.	+	0	Parent=Os03t0747900-00
Chr03	irgsp1_rep	CDS	30766349	30766485	.	+	0	Parent=Os03t0747900-00
Chr03	irgsp1_rep	CDS	30766571	30766717	.	+	1	Parent=Os03t0747900-00
Chr03	irgsp1_rep	CDS	30766840	30766941	.	+	1	Parent=Os03t0747900-00
Chr03	irgsp1_rep	CDS	30767035	30767092	.	+	1	Parent=Os03t0747900-00
Chr03	irgsp1_rep	CDS	30767457	30767558	.	+	0	Parent=Os03t0747900-00
Chr03	irgsp1_rep	CDS	30767630	30767667	.	+	0	Parent=Os03t0747900-00
Chr03	irgsp1_rep	CDS	30767886	30768012	.	+	1	Parent=Os03t0747900-00
Chr03	irgsp1_rep	CDS	30768093	30768263	.	+	0	Parent=Os03t0747900-00
Chr03	irgsp1_rep	CDS	30768353	30768484	.	+	0	Parent=Os03t0747900-00
Chr03	irgsp1_rep	CDS	30768615	30768721	.	+	0	Parent=Os03t0747900-00
Chr03	irgsp1_rep	CDS	30768855	30768915	.	+	1	Parent=Os03t0747900-00
Chr03	irgsp1_rep	CDS	30769010	30769187	.	+	0	Parent=Os03t0747900-00
Chr03	irgsp1_rep	CDS	30769285	30769490	.	+	2	Parent=Os03t0747900-00
Chr03	irgsp1_rep	CDS	30769613	30769732	.	+	0	Parent=Os03t0747900-00
Chr03	irgsp1_rep	CDS	30769821	30769919	.	+	0	Parent=Os03t0747900-00
Chr03	irgsp1_rep	CDS	30770061	30770276	.	+	0	Parent=Os03t0747900-00
Chr03	irgsp1_rep	CDS	30770373	30770512	.	+	0	Parent=Os03t0747900-00
Chr03	irgsp1_rep	CDS	30770599	30770700	.	+	1	Parent=Os03t0747900-00
Chr03	irgsp1_rep	CDS	30770787	30770901	.	+	1	Parent=Os03t0747900-00
Chr03	irgsp1_rep	CDS	30771017	30771061	.	+	0	Parent=Os03t0747900-00
Chr03	irgsp1_rep	CDS	30771169	30771234	.	+	0	Parent=Os03t0747900-00
Chr03	irgsp1_rep	CDS	30771363	30771533	.	+	0	Parent=Os03t0747900-00
Chr03	irgsp1_rep	CDS	30771634	30771786	.	+	0	Parent=Os03t0747900-00
Chr03	irgsp1_rep	CDS	30771968	30772177	.	+	0	Parent=Os03t0747900-00
Chr03	irgsp1_rep	CDS	30772256	30772402	.	+	0	Parent=Os03t0747900-00
Chr03	irgsp1_rep	CDS	30772475	30772545	.	+	0	Parent=Os03t0747900-00
Chr03	irgsp1_rep	CDS	30772688	30772787	.	+	1	Parent=Os03t0747900-00
Chr03	irgsp1_rep	CDS	30772876	30772974	.	+	0	Parent=Os03t0747900-00
Chr03	irgsp1_rep	three_prime_UTR	30772975	30773228	.	+	.	Parent=Os03t0747900-00
Chr03	irgsp1_rep	three_prime_UTR	30773359	30773441	.	+	.	Parent=Os03t0747900-00
Chr03	irgsp1_rep	three_prime_UTR	30773544	30773947	.	+	.	Parent=Os03t0747900-00
Chr03	irgsp1_rep	mRNA	30777720	30781828	.	+	.	ID=Os03t0748000-01;Name=Os03t0748000-01;Locus_id=Os03g0748000;Note=YT521-B-like protein family protein.;Transcript_evidence=AK101299 (DDBJ%2C Best hit);ORF_evidence=Q10RI3 (UniProt);InterPro=YTH domain (IPR007275);NIAS_FLcDNA=J033033J09;Expression=AK101299;TENOR=Os03t0748000-01;KEGG=Os03t0748000-01
Chr03	irgsp1_rep	five_prime_UTR	30777720	30777990	.	+	.	Parent=Os03t0748000-01
Chr03	irgsp1_rep	CDS	30777991	30778021	.	+	0	Parent=Os03t0748000-01
Chr03	irgsp1_rep	CDS	30778252	30778325	.	+	2	Parent=Os03t0748000-01
Chr03	irgsp1_rep	CDS	30778433	30778592	.	+	0	Parent=Os03t0748000-01
Chr03	irgsp1_rep	CDS	30778675	30778742	.	+	2	Parent=Os03t0748000-01
Chr03	irgsp1_rep	CDS	30778971	30779513	.	+	0	Parent=Os03t0748000-01
Chr03	irgsp1_rep	CDS	30779765	30780352	.	+	0	Parent=Os03t0748000-01
Chr03	irgsp1_rep	CDS	30780432	30780644	.	+	0	Parent=Os03t0748000-01
Chr03	irgsp1_rep	CDS	30780997	30781139	.	+	0	Parent=Os03t0748000-01
Chr03	irgsp1_rep	CDS	30781263	30781428	.	+	1	Parent=Os03t0748000-01
Chr03	irgsp1_rep	three_prime_UTR	30781429	30781828	.	+	.	Parent=Os03t0748000-01
Chr03	irgsp1_rep	mRNA	30779369	30781832	.	+	.	ID=Os03t0748000-02;Name=Os03t0748000-02;Locus_id=Os03g0748000;Note=Similar to YT521-B-like family protein%2C expressed.;Transcript_evidence=AK068139 (DDBJ%2C Best hit);ORF_evidence=Q10RI3 (UniProt);InterPro=YTH domain (IPR007275);NIAS_FLcDNA=J013134C01;Expression=AK068139;TENOR=Os03t0748000-02;KEGG=Os03t0748000-02
Chr03	irgsp1_rep	five_prime_UTR	30779369	30779369	.	+	.	Parent=Os03t0748000-02
Chr03	irgsp1_rep	CDS	30779370	30779513	.	+	0	Parent=Os03t0748000-02
Chr03	irgsp1_rep	CDS	30779765	30780352	.	+	0	Parent=Os03t0748000-02
Chr03	irgsp1_rep	CDS	30780432	30780644	.	+	0	Parent=Os03t0748000-02
Chr03	irgsp1_rep	CDS	30780997	30781139	.	+	0	Parent=Os03t0748000-02
Chr03	irgsp1_rep	CDS	30781263	30781428	.	+	1	Parent=Os03t0748000-02
Chr03	irgsp1_rep	three_prime_UTR	30781429	30781832	.	+	.	Parent=Os03t0748000-02
Chr03	irgsp1_rep	mRNA	30780206	30781144	.	-	.	ID=Os03t0748050-00;Name=Os03t0748050-00;Locus_id=Os03g0748050;Note=Non-protein coding transcript.;Transcript_evidence=BT016473 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0748050-00
Chr03	irgsp1_rep	exon	30781003	30781144	.	-	.	Parent=Os03t0748050-00
Chr03	irgsp1_rep	exon	30780438	30780650	.	-	.	Parent=Os03t0748050-00
Chr03	irgsp1_rep	exon	30780206	30780350	.	-	.	Parent=Os03t0748050-00
Chr03	irgsp1_rep	mRNA	30788424	30789445	.	+	.	ID=Os03t0748100-01;Name=Os03t0748100-01;Locus_id=Os03g0748100;Note=Similar to Short-chain type dehydrogenase/reductase (EC 1.-.-.-).;Transcript_evidence=AK108283 (DDBJ%2C Best hit);ORF_evidence=NP_001150880.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);NIAS_FLcDNA=002-141-D03;Expression=AK108283;TENOR=Os03t0748100-01;KEGG=Os03t0748100-01
Chr03	irgsp1_rep	five_prime_UTR	30788424	30788500	.	+	.	Parent=Os03t0748100-01
Chr03	irgsp1_rep	CDS	30788501	30789331	.	+	0	Parent=Os03t0748100-01
Chr03	irgsp1_rep	three_prime_UTR	30789332	30789445	.	+	.	Parent=Os03t0748100-01
Chr03	irgsp1_rep	mRNA	30791616	30796380	.	+	.	ID=Os03t0748200-01;Name=Os03t0748200-01;Locus_id=Os03g0748200;Note=Similar to Inhibitor of growth protein 3 (p47ING3 protein).;Transcript_evidence=AK106146 (DDBJ%2C Best hit);ORF_evidence=Q10CW3 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-finger (IPR019787),Inhibitor of growth protein%2C N-terminal (IPR024610);NIAS_FLcDNA=001-207-H03;Expression=AK106146;TENOR=Os03t0748200-01;KEGG=Os03t0748200-01
Chr03	irgsp1_rep	five_prime_UTR	30791616	30791766	.	+	.	Parent=Os03t0748200-01
Chr03	irgsp1_rep	CDS	30791767	30791812	.	+	0	Parent=Os03t0748200-01
Chr03	irgsp1_rep	CDS	30791908	30791979	.	+	2	Parent=Os03t0748200-01
Chr03	irgsp1_rep	CDS	30792221	30792411	.	+	2	Parent=Os03t0748200-01
Chr03	irgsp1_rep	CDS	30793044	30793107	.	+	0	Parent=Os03t0748200-01
Chr03	irgsp1_rep	CDS	30793753	30794003	.	+	2	Parent=Os03t0748200-01
Chr03	irgsp1_rep	CDS	30794106	30794144	.	+	0	Parent=Os03t0748200-01
Chr03	irgsp1_rep	CDS	30795266	30795364	.	+	0	Parent=Os03t0748200-01
Chr03	irgsp1_rep	three_prime_UTR	30795365	30795384	.	+	.	Parent=Os03t0748200-01
Chr03	irgsp1_rep	three_prime_UTR	30796032	30796380	.	+	.	Parent=Os03t0748200-01
Chr03	irgsp1_rep	mRNA	30796483	30798275	.	-	.	ID=Os03t0748300-01;Name=Os03t0748300-01;Locus_id=Os03g0748300;Note=Aldose 1-epimerase family protein.;Transcript_evidence=AK068519 (DDBJ%2C Best hit);ORF_evidence=Q8W307 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Glycoside hydrolase-type carbohydrate-binding (IPR011013),Glycoside hydrolase-type carbohydrate-binding%2C subgroup (IPR014718);NIAS_FLcDNA=J013156O10;Expression=AK068519;TENOR=Os03t0748300-01;KEGG=Os03t0748300-01
Chr03	irgsp1_rep	five_prime_UTR	30798203	30798275	.	-	.	Parent=Os03t0748300-01
Chr03	irgsp1_rep	CDS	30797159	30798202	.	-	0	Parent=Os03t0748300-01
Chr03	irgsp1_rep	CDS	30796620	30796811	.	-	0	Parent=Os03t0748300-01
Chr03	irgsp1_rep	three_prime_UTR	30796483	30796619	.	-	.	Parent=Os03t0748300-01
Chr03	irgsp1_rep	mRNA	30803349	30807412	.	+	.	ID=Os03t0748400-01;Name=Os03t0748400-01;Locus_id=Os03g0748400;Note=Serine protein kinase-like protein.;Transcript_evidence=AK070433 (DDBJ%2C Best hit);ORF_evidence=Q8W306 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023054B12;Expression=AK070433;TENOR=Os03t0748400-01;KEGG=Os03t0748400-01 (EC:2.7.11.1)
Chr03	irgsp1_rep	five_prime_UTR	30803349	30803491	.	+	.	Parent=Os03t0748400-01
Chr03	irgsp1_rep	CDS	30803492	30803752	.	+	0	Parent=Os03t0748400-01
Chr03	irgsp1_rep	CDS	30804073	30805041	.	+	0	Parent=Os03t0748400-01
Chr03	irgsp1_rep	three_prime_UTR	30805042	30806588	.	+	.	Parent=Os03t0748400-01
Chr03	irgsp1_rep	three_prime_UTR	30806669	30807412	.	+	.	Parent=Os03t0748400-01
Chr03	irgsp1_rep	mRNA	30807649	30808698	.	-	.	ID=Os03t0748500-01;Name=Os03t0748500-01;Locus_id=Os03g0748500;Oryzabase Gene Symbol Synonym(s)=OS-QR;Oryzabase Gene Name Synonym(s)=quinone reductase;Note=Similar to flavoprotein wrbA.;Transcript_evidence=AK110695 (DDBJ%2C Best hit);ORF_evidence=NP_001147306.1 (RefSeq);GO=Biological Process: negative regulation of transcription%2C DNA-dependent (GO:0045892),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=NADPH-dependent FMN reductase (IPR005025),Flavodoxin/nitric oxide synthase (IPR008254),Flavoprotein WrbA (IPR010089);NIAS_FLcDNA=002-170-A09;Oryzabase=15168;TENOR=Os03t0748500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	30808549	30808698	.	-	.	Parent=Os03t0748500-01
Chr03	irgsp1_rep	CDS	30808181	30808548	.	-	0	Parent=Os03t0748500-01
Chr03	irgsp1_rep	CDS	30807848	30808082	.	-	1	Parent=Os03t0748500-01
Chr03	irgsp1_rep	three_prime_UTR	30807649	30807847	.	-	.	Parent=Os03t0748500-01
Chr03	irgsp1_rep	mRNA	30807870	30808387	.	+	.	ID=Os03t0748550-00;Name=Os03t0748550-00;Locus_id=Os03g0748550;Note=Hypothetical protein.;Transcript_evidence=BT017374 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0748550-00
Chr03	irgsp1_rep	five_prime_UTR	30807870	30807887	.	+	.	Parent=Os03t0748550-00
Chr03	irgsp1_rep	CDS	30807888	30808082	.	+	0	Parent=Os03t0748550-00
Chr03	irgsp1_rep	CDS	30808180	30808387	.	+	0	Parent=Os03t0748550-00
Chr03	irgsp1_rep	mRNA	30809029	30809991	.	+	.	ID=Os03t0748600-01;Name=Os03t0748600-01;Locus_id=Os03g0748600;Note=Conserved hypothetical protein.;Transcript_evidence=AK062629 (DDBJ%2C Best hit);ORF_evidence=Q8W304 (UniProt);NIAS_FLcDNA=001-105-C06;Expression=AK062629;TENOR=Os03t0748600-01;KEGG=Os03t0748600-01
Chr03	irgsp1_rep	five_prime_UTR	30809029	30809097	.	+	.	Parent=Os03t0748600-01
Chr03	irgsp1_rep	CDS	30809098	30809169	.	+	0	Parent=Os03t0748600-01
Chr03	irgsp1_rep	CDS	30809271	30809534	.	+	0	Parent=Os03t0748600-01
Chr03	irgsp1_rep	CDS	30809643	30809822	.	+	0	Parent=Os03t0748600-01
Chr03	irgsp1_rep	three_prime_UTR	30809823	30809991	.	+	.	Parent=Os03t0748600-01
Chr03	irgsp1_rep	mRNA	30810342	30814716	.	-	.	ID=Os03t0748700-01;Name=Os03t0748700-01;Locus_id=Os03g0748700;CGSNL Gene Symbol=ISC38;CGSNL Gene Name=IRON-SULFUR CLUSTER PROTEIN 38;Oryzabase Gene Symbol Synonym(s)=OsISC38;Oryzabase Gene Name Synonym(s)=Iron-sulfur cluster protein 38;Note=Iron hydrogenase domain containing protein.;Transcript_evidence=AK067853 (DDBJ%2C Best hit);ORF_evidence=Q93YF9 (UniProt);InterPro=Iron hydrogenase%2C small subunit-like (IPR003149),Iron hydrogenase%2C large subunit%2C C-terminal (IPR004108),Iron hydrogenase (IPR009016);NIAS_FLcDNA=J013122O17;Oryzabase=13440;Expression=AK067853;TENOR=Os03t0748700-01;KEGG=Os03t0748700-01
Chr03	irgsp1_rep	five_prime_UTR	30814614	30814716	.	-	.	Parent=Os03t0748700-01
Chr03	irgsp1_rep	CDS	30814479	30814613	.	-	0	Parent=Os03t0748700-01
Chr03	irgsp1_rep	CDS	30813525	30813607	.	-	0	Parent=Os03t0748700-01
Chr03	irgsp1_rep	CDS	30813285	30813438	.	-	1	Parent=Os03t0748700-01
Chr03	irgsp1_rep	CDS	30812925	30813111	.	-	0	Parent=Os03t0748700-01
Chr03	irgsp1_rep	CDS	30812393	30812519	.	-	2	Parent=Os03t0748700-01
Chr03	irgsp1_rep	CDS	30812133	30812283	.	-	1	Parent=Os03t0748700-01
Chr03	irgsp1_rep	CDS	30811998	30812047	.	-	0	Parent=Os03t0748700-01
Chr03	irgsp1_rep	CDS	30811574	30811745	.	-	1	Parent=Os03t0748700-01
Chr03	irgsp1_rep	CDS	30811342	30811468	.	-	0	Parent=Os03t0748700-01
Chr03	irgsp1_rep	CDS	30811153	30811244	.	-	2	Parent=Os03t0748700-01
Chr03	irgsp1_rep	CDS	30810609	30810761	.	-	0	Parent=Os03t0748700-01
Chr03	irgsp1_rep	three_prime_UTR	30810342	30810608	.	-	.	Parent=Os03t0748700-01
Chr03	irgsp1_rep	mRNA	30815040	30815499	.	+	.	ID=Os03t0748750-00;Name=Os03t0748750-00;Locus_id=Os03g0748750;Note=Conserved hypothetical protein.;Transcript_evidence=CT835159 (DDBJ%2C Best hit);ORF_evidence=NP_001060202.1 (RefSeq);TENOR=Os03t0748750-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	30815040	30815197	.	+	.	Parent=Os03t0748750-00
Chr03	irgsp1_rep	CDS	30815198	30815383	.	+	0	Parent=Os03t0748750-00
Chr03	irgsp1_rep	three_prime_UTR	30815384	30815499	.	+	.	Parent=Os03t0748750-00
Chr03	irgsp1_rep	mRNA	30815621	30822590	.	-	.	ID=Os03t0748800-01;Name=Os03t0748800-01;Locus_id=Os03g0748800;Note=Similar to Helicase associated domain family protein%2C expressed.;Transcript_evidence=AK243482 (DDBJ%2C Best hit);ORF_evidence=Q10CV6 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723),Molecular Function: double-stranded RNA binding (GO:0003725),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=Double-stranded RNA-binding (IPR001159),Helicase%2C C-terminal (IPR001650),Helicase-associated domain (IPR007502),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),Domain of unknown function DUF1605 (IPR011709),DEAD-like helicase (IPR014001),Double-stranded RNA-binding-like (IPR014720);NIAS_FLcDNA=J100073C10;TENOR=Os03t0748800-01;KEGG=Os03t0748800-01
Chr03	irgsp1_rep	five_prime_UTR	30822419	30822590	.	-	.	Parent=Os03t0748800-01
Chr03	irgsp1_rep	CDS	30822200	30822418	.	-	0	Parent=Os03t0748800-01
Chr03	irgsp1_rep	CDS	30821943	30822097	.	-	0	Parent=Os03t0748800-01
Chr03	irgsp1_rep	CDS	30821755	30821842	.	-	1	Parent=Os03t0748800-01
Chr03	irgsp1_rep	CDS	30821421	30821651	.	-	0	Parent=Os03t0748800-01
Chr03	irgsp1_rep	CDS	30821063	30821158	.	-	0	Parent=Os03t0748800-01
Chr03	irgsp1_rep	CDS	30820752	30820940	.	-	0	Parent=Os03t0748800-01
Chr03	irgsp1_rep	CDS	30820463	30820622	.	-	0	Parent=Os03t0748800-01
Chr03	irgsp1_rep	CDS	30820243	30820373	.	-	2	Parent=Os03t0748800-01
Chr03	irgsp1_rep	CDS	30819990	30820160	.	-	0	Parent=Os03t0748800-01
Chr03	irgsp1_rep	CDS	30819625	30819897	.	-	0	Parent=Os03t0748800-01
Chr03	irgsp1_rep	CDS	30819216	30819410	.	-	0	Parent=Os03t0748800-01
Chr03	irgsp1_rep	CDS	30818410	30818613	.	-	0	Parent=Os03t0748800-01
Chr03	irgsp1_rep	CDS	30818240	30818309	.	-	0	Parent=Os03t0748800-01
Chr03	irgsp1_rep	CDS	30818000	30818148	.	-	2	Parent=Os03t0748800-01
Chr03	irgsp1_rep	CDS	30817533	30817841	.	-	0	Parent=Os03t0748800-01
Chr03	irgsp1_rep	CDS	30817387	30817446	.	-	0	Parent=Os03t0748800-01
Chr03	irgsp1_rep	CDS	30817066	30817218	.	-	0	Parent=Os03t0748800-01
Chr03	irgsp1_rep	CDS	30816863	30816973	.	-	0	Parent=Os03t0748800-01
Chr03	irgsp1_rep	CDS	30815941	30816429	.	-	0	Parent=Os03t0748800-01
Chr03	irgsp1_rep	three_prime_UTR	30815621	30815940	.	-	.	Parent=Os03t0748800-01
Chr03	irgsp1_rep	mRNA	30825190	30829241	.	+	.	ID=Os03t0748900-01;Name=Os03t0748900-01;Locus_id=Os03g0748900;Note=Aldo/keto reductase domain containing protein.;Transcript_evidence=AK061165 (DDBJ%2C Best hit);ORF_evidence=NP_001148213.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Aldo/keto reductase (IPR001395),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=006-209-A07;Expression=AK061165;TENOR=Os03t0748900-01;KEGG=Os03t0748900-01
Chr03	irgsp1_rep	five_prime_UTR	30825190	30825412	.	+	.	Parent=Os03t0748900-01
Chr03	irgsp1_rep	CDS	30825413	30825418	.	+	0	Parent=Os03t0748900-01
Chr03	irgsp1_rep	CDS	30825514	30825632	.	+	0	Parent=Os03t0748900-01
Chr03	irgsp1_rep	CDS	30825769	30825847	.	+	1	Parent=Os03t0748900-01
Chr03	irgsp1_rep	CDS	30826824	30826898	.	+	0	Parent=Os03t0748900-01
Chr03	irgsp1_rep	CDS	30826994	30827068	.	+	0	Parent=Os03t0748900-01
Chr03	irgsp1_rep	CDS	30827354	30827691	.	+	0	Parent=Os03t0748900-01
Chr03	irgsp1_rep	CDS	30827921	30828044	.	+	1	Parent=Os03t0748900-01
Chr03	irgsp1_rep	CDS	30828879	30828899	.	+	0	Parent=Os03t0748900-01
Chr03	irgsp1_rep	three_prime_UTR	30828900	30829241	.	+	.	Parent=Os03t0748900-01
Chr03	irgsp1_rep	mRNA	30830441	30831935	.	+	.	ID=Os03t0749000-00;Name=Os03t0749000-00;Locus_id=Os03g0749000;CGSNL Gene Symbol=AMT4%3B1;CGSNL Gene Name=AMMONIUM TRANSPORTER 4%3B1;Oryzabase Gene Symbol Synonym(s)=OsAMT4%2C OsAMT4%3B1%2C AMT4-1;Oryzabase Gene Name Synonym(s)=Putative ammonium transporter 4 member 1;Note=Putative ammonium transporter 4 member 1.;Transcript_evidence=Q10CV4 (UniProt);ORF_evidence=Q10CV4 (UniProt);GO=Biological Process: ammonium transmembrane transport (GO:0072488),Cellular Component: membrane (GO:0016020),Molecular Function: ammonium transmembrane transporter activity (GO:0008519);InterPro=Ammonium transporter (IPR001905),Ammonium transporter AmtB-like (IPR024041);Oryzabase=3067;TENOR=Os03t0749000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	30830441	30830566	.	+	0	Parent=Os03t0749000-00
Chr03	irgsp1_rep	CDS	30831112	30831405	.	+	0	Parent=Os03t0749000-00
Chr03	irgsp1_rep	CDS	30831456	30831935	.	+	0	Parent=Os03t0749000-00
Chr03	irgsp1_rep	mRNA	30830459	30831396	.	-	.	ID=Os03t0749051-00;Name=Os03t0749051-00;Locus_id=Os03g0749051;Note=Hypothetical protein.;Transcript_evidence=BT054429 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0749051-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	30831106	30831396	.	-	.	Parent=Os03t0749051-00
Chr03	irgsp1_rep	CDS	30830791	30831105	.	-	0	Parent=Os03t0749051-00
Chr03	irgsp1_rep	three_prime_UTR	30830747	30830790	.	-	.	Parent=Os03t0749051-00
Chr03	irgsp1_rep	three_prime_UTR	30830459	30830679	.	-	.	Parent=Os03t0749051-00
Chr03	irgsp1_rep	mRNA	30835650	30838138	.	+	.	ID=Os03t0749100-01;Name=Os03t0749100-01;Locus_id=Os03g0749100;Note=Similar to Beta-glucanase.;Transcript_evidence=AK072485 (DDBJ%2C Best hit);ORF_evidence=NP_001105671.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 3%2C N-terminal (IPR001764),Glycoside hydrolase%2C family 3%2C C-terminal (IPR002772),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J023133K21;Expression=AK072485;TENOR=Os03t0749100-01;KEGG=Os03t0749100-01
Chr03	irgsp1_rep	five_prime_UTR	30835650	30835703	.	+	.	Parent=Os03t0749100-01
Chr03	irgsp1_rep	CDS	30835704	30835959	.	+	0	Parent=Os03t0749100-01
Chr03	irgsp1_rep	CDS	30836048	30836343	.	+	2	Parent=Os03t0749100-01
Chr03	irgsp1_rep	CDS	30836438	30836830	.	+	0	Parent=Os03t0749100-01
Chr03	irgsp1_rep	CDS	30836896	30837388	.	+	0	Parent=Os03t0749100-01
Chr03	irgsp1_rep	CDS	30837462	30837958	.	+	2	Parent=Os03t0749100-01
Chr03	irgsp1_rep	three_prime_UTR	30837959	30838138	.	+	.	Parent=Os03t0749100-01
Chr03	irgsp1_rep	mRNA	30835703	30837937	.	-	.	ID=Os03t0749200-00;Name=Os03t0749200-00;Locus_id=Os03g0749200;Note=Hypothetical protein.;Transcript_evidence=tplb0060e05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0749200-00
Chr03	irgsp1_rep	five_prime_UTR	30837896	30837937	.	-	.	Parent=Os03t0749200-00
Chr03	irgsp1_rep	CDS	30837421	30837895	.	-	0	Parent=Os03t0749200-00
Chr03	irgsp1_rep	CDS	30836914	30837341	.	-	2	Parent=Os03t0749200-00
Chr03	irgsp1_rep	CDS	30836749	30836847	.	-	0	Parent=Os03t0749200-00
Chr03	irgsp1_rep	three_prime_UTR	30836413	30836748	.	-	.	Parent=Os03t0749200-00
Chr03	irgsp1_rep	three_prime_UTR	30836016	30836324	.	-	.	Parent=Os03t0749200-00
Chr03	irgsp1_rep	three_prime_UTR	30835703	30835930	.	-	.	Parent=Os03t0749200-00
Chr03	irgsp1_rep	mRNA	30853039	30857323	.	+	.	ID=Os03t0749300-01;Name=Os03t0749300-01;Locus_id=Os03g0749300;Oryzabase Gene Symbol Synonym(s)=OsBGLU1;Oryzabase Gene Name Synonym(s)=periplasmic beta-glucosidase 1;Note=Similar to Exoglucanase precursor.;Transcript_evidence=AK065044 (DDBJ%2C Best hit);ORF_evidence=Q8RWR5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 3%2C N-terminal (IPR001764),Glycoside hydrolase%2C family 3%2C C-terminal (IPR002772),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J013001H22;Oryzabase=15298;Expression=AK065044;TENOR=Os03t0749300-01;KEGG=Os03t0749300-01
Chr03	irgsp1_rep	five_prime_UTR	30853039	30854006	.	+	.	Parent=Os03t0749300-01
Chr03	irgsp1_rep	CDS	30854007	30854223	.	+	0	Parent=Os03t0749300-01
Chr03	irgsp1_rep	CDS	30854321	30854525	.	+	2	Parent=Os03t0749300-01
Chr03	irgsp1_rep	CDS	30854736	30854826	.	+	1	Parent=Os03t0749300-01
Chr03	irgsp1_rep	CDS	30854944	30855086	.	+	0	Parent=Os03t0749300-01
Chr03	irgsp1_rep	CDS	30855226	30855469	.	+	1	Parent=Os03t0749300-01
Chr03	irgsp1_rep	CDS	30855576	30855680	.	+	0	Parent=Os03t0749300-01
Chr03	irgsp1_rep	CDS	30856025	30856207	.	+	0	Parent=Os03t0749300-01
Chr03	irgsp1_rep	CDS	30856295	30856499	.	+	0	Parent=Os03t0749300-01
Chr03	irgsp1_rep	CDS	30856592	30857076	.	+	2	Parent=Os03t0749300-01
Chr03	irgsp1_rep	three_prime_UTR	30857077	30857323	.	+	.	Parent=Os03t0749300-01
Chr03	irgsp1_rep	mRNA	30853990	30857323	.	+	.	ID=Os03t0749300-02;Name=Os03t0749300-02;Locus_id=Os03g0749300;Oryzabase Gene Symbol Synonym(s)=OsBGLU1;Oryzabase Gene Name Synonym(s)=periplasmic beta-glucosidase 1;Note=Similar to Exoglucanase precursor.;Transcript_evidence=AK122100 (DDBJ%2C Best hit);ORF_evidence=Q8RWR5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 3%2C N-terminal (IPR001764),Glycoside hydrolase%2C family 3%2C C-terminal (IPR002772),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J033125I15;Oryzabase=15298;Expression=AK122100;TENOR=Os03t0749300-02;KEGG=Os03t0749300-02
Chr03	irgsp1_rep	five_prime_UTR	30853990	30854006	.	+	.	Parent=Os03t0749300-02
Chr03	irgsp1_rep	CDS	30854007	30854223	.	+	0	Parent=Os03t0749300-02
Chr03	irgsp1_rep	CDS	30854321	30854525	.	+	2	Parent=Os03t0749300-02
Chr03	irgsp1_rep	CDS	30854736	30854826	.	+	1	Parent=Os03t0749300-02
Chr03	irgsp1_rep	CDS	30854944	30855086	.	+	0	Parent=Os03t0749300-02
Chr03	irgsp1_rep	CDS	30855226	30855469	.	+	1	Parent=Os03t0749300-02
Chr03	irgsp1_rep	CDS	30855576	30855680	.	+	0	Parent=Os03t0749300-02
Chr03	irgsp1_rep	CDS	30856025	30856207	.	+	0	Parent=Os03t0749300-02
Chr03	irgsp1_rep	CDS	30856295	30856499	.	+	0	Parent=Os03t0749300-02
Chr03	irgsp1_rep	CDS	30856592	30857076	.	+	2	Parent=Os03t0749300-02
Chr03	irgsp1_rep	three_prime_UTR	30857077	30857323	.	+	.	Parent=Os03t0749300-02
Chr03	irgsp1_rep	mRNA	30854764	30857323	.	+	.	ID=Os03t0749300-03;Name=Os03t0749300-03;Locus_id=Os03g0749300;Oryzabase Gene Symbol Synonym(s)=OsBGLU1;Oryzabase Gene Name Synonym(s)=periplasmic beta-glucosidase 1;Note=Similar to Exoglucanase.;Transcript_evidence=AK119203 (DDBJ%2C Best hit);ORF_evidence=NP_001130296.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 3%2C N-terminal (IPR001764),Glycoside hydrolase%2C family 3%2C C-terminal (IPR002772),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-041-D08;Oryzabase=15298;Expression=AK119203;TENOR=Os03t0749300-03;KEGG=Os03t0749300-03
Chr03	irgsp1_rep	CDS	30854764	30854826	.	+	0	Parent=Os03t0749300-03
Chr03	irgsp1_rep	CDS	30854944	30855086	.	+	0	Parent=Os03t0749300-03
Chr03	irgsp1_rep	CDS	30855226	30855469	.	+	1	Parent=Os03t0749300-03
Chr03	irgsp1_rep	CDS	30855576	30855680	.	+	0	Parent=Os03t0749300-03
Chr03	irgsp1_rep	CDS	30856025	30856207	.	+	0	Parent=Os03t0749300-03
Chr03	irgsp1_rep	CDS	30856295	30856499	.	+	0	Parent=Os03t0749300-03
Chr03	irgsp1_rep	CDS	30856592	30857076	.	+	2	Parent=Os03t0749300-03
Chr03	irgsp1_rep	three_prime_UTR	30857077	30857323	.	+	.	Parent=Os03t0749300-03
Chr03	irgsp1_rep	mRNA	30856796	30857319	.	+	.	ID=Os03t0749300-04;Name=Os03t0749300-04;Locus_id=Os03g0749300;Oryzabase Gene Symbol Synonym(s)=OsBGLU1;Oryzabase Gene Name Synonym(s)=periplasmic beta-glucosidase 1;Note=Similar to Cell wall beta-glucosidase.;Transcript_evidence=AK062147 (DDBJ%2C Best hit);ORF_evidence=Q6PQF3 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 3%2C C-terminal (IPR002772);NIAS_FLcDNA=001-045-H01;Oryzabase=15298;Expression=AK062147;TENOR=Os03t0749300-04;KEGG=Os03t0749300-04
Chr03	irgsp1_rep	five_prime_UTR	30856796	30856797	.	+	.	Parent=Os03t0749300-04
Chr03	irgsp1_rep	CDS	30856798	30857076	.	+	0	Parent=Os03t0749300-04
Chr03	irgsp1_rep	three_prime_UTR	30857077	30857319	.	+	.	Parent=Os03t0749300-04
Chr03	irgsp1_rep	mRNA	30854084	30857088	.	-	.	ID=Os03t0749401-00;Name=Os03t0749401-00;Locus_id=Os03g0749401;Note=Hypothetical protein.;Transcript_evidence=tplb0060e05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0749401-00
Chr03	irgsp1_rep	five_prime_UTR	30856583	30857088	.	-	.	Parent=Os03t0749401-00
Chr03	irgsp1_rep	five_prime_UTR	30856424	30856493	.	-	.	Parent=Os03t0749401-00
Chr03	irgsp1_rep	CDS	30856287	30856423	.	-	0	Parent=Os03t0749401-00
Chr03	irgsp1_rep	CDS	30856120	30856195	.	-	1	Parent=Os03t0749401-00
Chr03	irgsp1_rep	three_prime_UTR	30855923	30856119	.	-	.	Parent=Os03t0749401-00
Chr03	irgsp1_rep	three_prime_UTR	30855175	30855479	.	-	.	Parent=Os03t0749401-00
Chr03	irgsp1_rep	three_prime_UTR	30854937	30855032	.	-	.	Parent=Os03t0749401-00
Chr03	irgsp1_rep	three_prime_UTR	30854733	30854815	.	-	.	Parent=Os03t0749401-00
Chr03	irgsp1_rep	three_prime_UTR	30854319	30854522	.	-	.	Parent=Os03t0749401-00
Chr03	irgsp1_rep	three_prime_UTR	30854084	30854221	.	-	.	Parent=Os03t0749401-00
Chr03	irgsp1_rep	mRNA	30883130	30887955	.	+	.	ID=Os03t0749500-01;Name=Os03t0749500-01;Locus_id=Os03g0749500;Note=Similar to Exo-beta-glucanase.;Transcript_evidence=AK073110 (DDBJ%2C Best hit);ORF_evidence=Q9XE93 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 3%2C N-terminal (IPR001764),Glycoside hydrolase%2C family 3%2C C-terminal (IPR002772),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J033023H22;Expression=AK073110;TENOR=Os03t0749500-01;KEGG=Os03t0749500-01
Chr03	irgsp1_rep	five_prime_UTR	30883130	30883456	.	+	.	Parent=Os03t0749500-01
Chr03	irgsp1_rep	five_prime_UTR	30885168	30885206	.	+	.	Parent=Os03t0749500-01
Chr03	irgsp1_rep	CDS	30885207	30885426	.	+	0	Parent=Os03t0749500-01
Chr03	irgsp1_rep	CDS	30885520	30885722	.	+	2	Parent=Os03t0749500-01
Chr03	irgsp1_rep	CDS	30885813	30885905	.	+	0	Parent=Os03t0749500-01
Chr03	irgsp1_rep	CDS	30886003	30886148	.	+	0	Parent=Os03t0749500-01
Chr03	irgsp1_rep	CDS	30886251	30886494	.	+	1	Parent=Os03t0749500-01
Chr03	irgsp1_rep	CDS	30886602	30886706	.	+	0	Parent=Os03t0749500-01
Chr03	irgsp1_rep	CDS	30886814	30886996	.	+	0	Parent=Os03t0749500-01
Chr03	irgsp1_rep	CDS	30887092	30887778	.	+	0	Parent=Os03t0749500-01
Chr03	irgsp1_rep	three_prime_UTR	30887779	30887955	.	+	.	Parent=Os03t0749500-01
Chr03	irgsp1_rep	mRNA	30885184	30887763	.	-	.	ID=Os03t0749650-00;Name=Os03t0749650-00;Locus_id=Os03g0749650;Note=Hypothetical protein.;Transcript_evidence=tplb0060e05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0749650-00
Chr03	irgsp1_rep	five_prime_UTR	30887089	30887763	.	-	.	Parent=Os03t0749650-00
Chr03	irgsp1_rep	five_prime_UTR	30886829	30886993	.	-	.	Parent=Os03t0749650-00
Chr03	irgsp1_rep	five_prime_UTR	30886599	30886719	.	-	.	Parent=Os03t0749650-00
Chr03	irgsp1_rep	five_prime_UTR	30886258	30886491	.	-	.	Parent=Os03t0749650-00
Chr03	irgsp1_rep	five_prime_UTR	30886002	30886155	.	-	.	Parent=Os03t0749650-00
Chr03	irgsp1_rep	five_prime_UTR	30885902	30885904	.	-	.	Parent=Os03t0749650-00
Chr03	irgsp1_rep	CDS	30885825	30885901	.	-	0	Parent=Os03t0749650-00
Chr03	irgsp1_rep	CDS	30885519	30885732	.	-	1	Parent=Os03t0749650-00
Chr03	irgsp1_rep	CDS	30885184	30885425	.	-	0	Parent=Os03t0749650-00
Chr03	irgsp1_rep	mRNA	30893638	30899909	.	-	.	ID=Os03t0749800-01;Name=Os03t0749800-01;Locus_id=Os03g0749800;Note=Similar to Tousled-like protein kinase.;Transcript_evidence=AK111770 (DDBJ%2C Best hit);ORF_evidence=Q5I6Y0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023067A13;Expression=AK111770;TENOR=Os03t0749800-01;KEGG=Os03t0749800-01 (EC:2.7.11.1)
Chr03	irgsp1_rep	five_prime_UTR	30899430	30899909	.	-	.	Parent=Os03t0749800-01
Chr03	irgsp1_rep	CDS	30899208	30899429	.	-	0	Parent=Os03t0749800-01
Chr03	irgsp1_rep	CDS	30898826	30898915	.	-	0	Parent=Os03t0749800-01
Chr03	irgsp1_rep	CDS	30898504	30898710	.	-	0	Parent=Os03t0749800-01
Chr03	irgsp1_rep	CDS	30897622	30897672	.	-	0	Parent=Os03t0749800-01
Chr03	irgsp1_rep	CDS	30897156	30897263	.	-	0	Parent=Os03t0749800-01
Chr03	irgsp1_rep	CDS	30897028	30897072	.	-	0	Parent=Os03t0749800-01
Chr03	irgsp1_rep	CDS	30896375	30896487	.	-	0	Parent=Os03t0749800-01
Chr03	irgsp1_rep	CDS	30895937	30896003	.	-	1	Parent=Os03t0749800-01
Chr03	irgsp1_rep	CDS	30895251	30895317	.	-	0	Parent=Os03t0749800-01
Chr03	irgsp1_rep	CDS	30894842	30894939	.	-	2	Parent=Os03t0749800-01
Chr03	irgsp1_rep	CDS	30894582	30894761	.	-	0	Parent=Os03t0749800-01
Chr03	irgsp1_rep	CDS	30893745	30893999	.	-	0	Parent=Os03t0749800-01
Chr03	irgsp1_rep	three_prime_UTR	30893638	30893744	.	-	.	Parent=Os03t0749800-01
Chr03	irgsp1_rep	mRNA	30890317	30899839	.	-	.	ID=Os03t0749800-02;Name=Os03t0749800-02;Locus_id=Os03g0749800;Note=Similar to Tousled-like kinase (Fragment).;Transcript_evidence=AK111604 (DDBJ%2C Best hit);ORF_evidence=NP_001105246.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013098L24;Expression=AK111604;TENOR=Os03t0749800-02;KEGG=Os03t0749800-02 (EC:2.7.11.1)
Chr03	irgsp1_rep	five_prime_UTR	30899430	30899839	.	-	.	Parent=Os03t0749800-02
Chr03	irgsp1_rep	CDS	30899208	30899429	.	-	0	Parent=Os03t0749800-02
Chr03	irgsp1_rep	CDS	30898826	30898915	.	-	0	Parent=Os03t0749800-02
Chr03	irgsp1_rep	CDS	30898504	30898710	.	-	0	Parent=Os03t0749800-02
Chr03	irgsp1_rep	CDS	30897622	30897672	.	-	0	Parent=Os03t0749800-02
Chr03	irgsp1_rep	CDS	30897156	30897263	.	-	0	Parent=Os03t0749800-02
Chr03	irgsp1_rep	CDS	30897028	30897072	.	-	0	Parent=Os03t0749800-02
Chr03	irgsp1_rep	CDS	30896375	30896487	.	-	0	Parent=Os03t0749800-02
Chr03	irgsp1_rep	CDS	30895937	30896003	.	-	1	Parent=Os03t0749800-02
Chr03	irgsp1_rep	CDS	30895251	30895317	.	-	0	Parent=Os03t0749800-02
Chr03	irgsp1_rep	CDS	30894842	30894939	.	-	2	Parent=Os03t0749800-02
Chr03	irgsp1_rep	CDS	30894582	30894761	.	-	0	Parent=Os03t0749800-02
Chr03	irgsp1_rep	CDS	30893789	30893999	.	-	0	Parent=Os03t0749800-02
Chr03	irgsp1_rep	CDS	30892735	30892999	.	-	2	Parent=Os03t0749800-02
Chr03	irgsp1_rep	CDS	30892285	30892339	.	-	1	Parent=Os03t0749800-02
Chr03	irgsp1_rep	CDS	30890835	30890996	.	-	0	Parent=Os03t0749800-02
Chr03	irgsp1_rep	CDS	30890554	30890649	.	-	0	Parent=Os03t0749800-02
Chr03	irgsp1_rep	three_prime_UTR	30890317	30890553	.	-	.	Parent=Os03t0749800-02
Chr03	irgsp1_rep	mRNA	30900071	30901770	.	+	.	ID=Os03t0749900-01;Name=Os03t0749900-01;Locus_id=Os03g0749900;Note=N-6 adenine-specific DNA methylase%2C conserved site domain containing protein.;Transcript_evidence=AK061252 (DDBJ%2C Best hit);ORF_evidence=NP_567065.1 (RefSeq);GO=Biological Process: methylation (GO:0032259),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: methyltransferase activity (GO:0008168);InterPro=DNA methylase%2C N-6 adenine-specific%2C conserved site (IPR002052),DNA methylase%2C N-6 adenine-specific%2C eukaryotic (IPR019369);NIAS_FLcDNA=006-211-G03;Expression=AK061252;TENOR=Os03t0749900-01;KEGG=Os03t0749900-01
Chr03	irgsp1_rep	five_prime_UTR	30900071	30900093	.	+	.	Parent=Os03t0749900-01
Chr03	irgsp1_rep	CDS	30900094	30900573	.	+	0	Parent=Os03t0749900-01
Chr03	irgsp1_rep	CDS	30900667	30900748	.	+	0	Parent=Os03t0749900-01
Chr03	irgsp1_rep	CDS	30901305	30901468	.	+	2	Parent=Os03t0749900-01
Chr03	irgsp1_rep	three_prime_UTR	30901469	30901770	.	+	.	Parent=Os03t0749900-01
Chr03	irgsp1_rep	mRNA	30901840	30903031	.	-	.	ID=Os03t0750000-01;Name=Os03t0750000-01;Locus_id=Os03g0750000;Note=Similar to ethylene-responsive protein.;Transcript_evidence=AK071321 (DDBJ%2C Best hit);ORF_evidence=NP_001151646.1 (RefSeq);GO=Biological Process: response to stress (GO:0006950);InterPro=UspA (IPR006016),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J023088M23;TENOR=Os03t0750000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	30902955	30903031	.	-	.	Parent=Os03t0750000-01
Chr03	irgsp1_rep	CDS	30902697	30902954	.	-	0	Parent=Os03t0750000-01
Chr03	irgsp1_rep	three_prime_UTR	30902495	30902696	.	-	.	Parent=Os03t0750000-01
Chr03	irgsp1_rep	three_prime_UTR	30902304	30902421	.	-	.	Parent=Os03t0750000-01
Chr03	irgsp1_rep	three_prime_UTR	30901840	30902207	.	-	.	Parent=Os03t0750000-01
Chr03	irgsp1_rep	mRNA	30904264	30909752	.	-	.	ID=Os03t0750100-00;Name=Os03t0750100-00;Locus_id=Os03g0750100;Note=Similar to TPR Domain containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10CT3 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Tetratricopeptide-like helical (IPR011990);TENOR=Os03t0750100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	30909668	30909752	.	-	0	Parent=Os03t0750100-00
Chr03	irgsp1_rep	CDS	30906917	30907191	.	-	2	Parent=Os03t0750100-00
Chr03	irgsp1_rep	CDS	30906411	30906602	.	-	0	Parent=Os03t0750100-00
Chr03	irgsp1_rep	CDS	30906128	30906325	.	-	0	Parent=Os03t0750100-00
Chr03	irgsp1_rep	CDS	30905098	30905245	.	-	0	Parent=Os03t0750100-00
Chr03	irgsp1_rep	CDS	30904417	30904509	.	-	2	Parent=Os03t0750100-00
Chr03	irgsp1_rep	CDS	30904264	30904334	.	-	2	Parent=Os03t0750100-00
Chr03	irgsp1_rep	mRNA	30917040	30919195	.	+	.	ID=Os03t0750300-00;Name=Os03t0750300-00;Locus_id=Os03g0750300;Note=Conserved hypothetical protein.;Transcript_evidence=EU947175 (DDBJ);ORF_evidence=NP_001173642.1 (RefSeq);TENOR=Os03t0750300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	30917040	30918959	.	+	0	Parent=Os03t0750300-00
Chr03	irgsp1_rep	three_prime_UTR	30918960	30919195	.	+	.	Parent=Os03t0750300-00
Chr03	irgsp1_rep	mRNA	30920672	30921781	.	-	.	ID=Os03t0750400-01;Name=Os03t0750400-01;Locus_id=Os03g0750400;Note=Hypothetical protein.;Transcript_evidence=AK109888 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-149-E02;Expression=AK109888;TENOR=Os03t0750400-01;KEGG=Os03t0750400-01
Chr03	irgsp1_rep	five_prime_UTR	30921415	30921781	.	-	.	Parent=Os03t0750400-01
Chr03	irgsp1_rep	CDS	30920806	30921414	.	-	0	Parent=Os03t0750400-01
Chr03	irgsp1_rep	three_prime_UTR	30920672	30920805	.	-	.	Parent=Os03t0750400-01
Chr03	irgsp1_rep	mRNA	30920945	30921906	.	+	.	ID=Os03t0750500-01;Name=Os03t0750500-01;Locus_id=Os03g0750500;Note=Hypothetical conserved gene.;Transcript_evidence=AK243459 (DDBJ%2C Best hit);ORF_evidence=NP_001051285.2 (RefSeq);NIAS_FLcDNA=J100071A08;TENOR=Os03t0750500-01;KEGG=Os03t0750500-01
Chr03	irgsp1_rep	five_prime_UTR	30920945	30920992	.	+	.	Parent=Os03t0750500-01
Chr03	irgsp1_rep	CDS	30920993	30921336	.	+	0	Parent=Os03t0750500-01
Chr03	irgsp1_rep	CDS	30921352	30921496	.	+	1	Parent=Os03t0750500-01
Chr03	irgsp1_rep	three_prime_UTR	30921497	30921906	.	+	.	Parent=Os03t0750500-01
Chr03	irgsp1_rep	mRNA	30927374	30929678	.	-	.	ID=Os03t0750700-01;Name=Os03t0750700-01;Locus_id=Os03g0750700;Oryzabase Gene Symbol Synonym(s)=OsSTRL3%2C STRL3;Oryzabase Gene Name Synonym(s)=STR-like 3;Note=Six-bladed beta-propeller%2C TolB-like domain containing protein.;Transcript_evidence=AK099001 (DDBJ%2C Best hit),AK111876 (DDBJ%2C Best hit);ORF_evidence=NP_001150008.1 (RefSeq);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: strictosidine synthase activity (GO:0016844);InterPro=Six-bladed beta-propeller%2C TolB-like (IPR011042),Strictosidine synthase%2C conserved region (IPR018119);NIAS_FLcDNA=J013102B14,J033046K17;Oryzabase=21790;Expression=AK099001;TENOR=Os03t0750700-01;KEGG=Os03t0750700-01
Chr03	irgsp1_rep	five_prime_UTR	30929483	30929678	.	-	.	Parent=Os03t0750700-01
Chr03	irgsp1_rep	CDS	30928863	30929482	.	-	0	Parent=Os03t0750700-01
Chr03	irgsp1_rep	CDS	30928040	30928207	.	-	1	Parent=Os03t0750700-01
Chr03	irgsp1_rep	CDS	30927546	30927957	.	-	1	Parent=Os03t0750700-01
Chr03	irgsp1_rep	three_prime_UTR	30927374	30927545	.	-	.	Parent=Os03t0750700-01
Chr03	irgsp1_rep	mRNA	30935662	30942983	.	-	.	ID=Os03t0750800-01;Name=Os03t0750800-01;Locus_id=Os03g0750800;Oryzabase Gene Symbol Synonym(s)=OsHXA701%2C HXA701%2C ADA2;Oryzabase Gene Name Synonym(s)=SWIRM domain-containing protein HXA701;Note=Similar to Transcriptional adaptor (Fragment).;Transcript_evidence=AK072597 (DDBJ%2C Best hit);ORF_evidence=Q75LL6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C ZZ-type (IPR000433),SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcriptional adaptor 2 (IPR016827),SANT%2C eukarya (IPR017884);NIAS_FLcDNA=J023128E10;Oryzabase=12525;Expression=AK072597;TENOR=Os03t0750800-01;KEGG=Os03t0750800-01
Chr03	irgsp1_rep	five_prime_UTR	30942732	30942983	.	-	.	Parent=Os03t0750800-01
Chr03	irgsp1_rep	CDS	30942679	30942731	.	-	0	Parent=Os03t0750800-01
Chr03	irgsp1_rep	CDS	30942336	30942579	.	-	1	Parent=Os03t0750800-01
Chr03	irgsp1_rep	CDS	30942008	30942073	.	-	0	Parent=Os03t0750800-01
Chr03	irgsp1_rep	CDS	30941804	30941929	.	-	0	Parent=Os03t0750800-01
Chr03	irgsp1_rep	CDS	30941631	30941706	.	-	0	Parent=Os03t0750800-01
Chr03	irgsp1_rep	CDS	30939076	30939133	.	-	2	Parent=Os03t0750800-01
Chr03	irgsp1_rep	CDS	30938936	30938994	.	-	1	Parent=Os03t0750800-01
Chr03	irgsp1_rep	CDS	30938751	30938816	.	-	2	Parent=Os03t0750800-01
Chr03	irgsp1_rep	CDS	30938049	30938271	.	-	2	Parent=Os03t0750800-01
Chr03	irgsp1_rep	CDS	30937538	30937748	.	-	1	Parent=Os03t0750800-01
Chr03	irgsp1_rep	CDS	30936376	30936690	.	-	0	Parent=Os03t0750800-01
Chr03	irgsp1_rep	CDS	30936050	30936256	.	-	0	Parent=Os03t0750800-01
Chr03	irgsp1_rep	three_prime_UTR	30935662	30936049	.	-	.	Parent=Os03t0750800-01
Chr03	irgsp1_rep	mRNA	30938048	30942902	.	-	.	ID=Os03t0750800-02;Name=Os03t0750800-02;Locus_id=Os03g0750800;Oryzabase Gene Symbol Synonym(s)=OsHXA701%2C HXA701%2C ADA2;Oryzabase Gene Name Synonym(s)=SWIRM domain-containing protein HXA701;Note=Similar to cDNA clone:J023128E10%2C full insert sequence.;Transcript_evidence=AK061386 (DDBJ%2C Best hit);ORF_evidence=B7EL06 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C ZZ-type (IPR000433),SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),SANT%2C eukarya (IPR017884);NIAS_FLcDNA=006-305-A06;Oryzabase=12525;Expression=AK061386;TENOR=Os03t0750800-02;KEGG=Os03t0750800-02
Chr03	irgsp1_rep	five_prime_UTR	30942732	30942902	.	-	.	Parent=Os03t0750800-02
Chr03	irgsp1_rep	CDS	30942679	30942731	.	-	0	Parent=Os03t0750800-02
Chr03	irgsp1_rep	CDS	30942336	30942579	.	-	1	Parent=Os03t0750800-02
Chr03	irgsp1_rep	CDS	30942008	30942073	.	-	0	Parent=Os03t0750800-02
Chr03	irgsp1_rep	CDS	30941804	30941929	.	-	0	Parent=Os03t0750800-02
Chr03	irgsp1_rep	CDS	30941631	30941706	.	-	0	Parent=Os03t0750800-02
Chr03	irgsp1_rep	CDS	30939076	30939142	.	-	2	Parent=Os03t0750800-02
Chr03	irgsp1_rep	CDS	30938936	30938994	.	-	1	Parent=Os03t0750800-02
Chr03	irgsp1_rep	CDS	30938751	30938816	.	-	2	Parent=Os03t0750800-02
Chr03	irgsp1_rep	CDS	30938048	30938271	.	-	2	Parent=Os03t0750800-02
Chr03	irgsp1_rep	mRNA	30935642	30941853	.	-	.	ID=Os03t0750800-03;Name=Os03t0750800-03;Locus_id=Os03g0750800;Oryzabase Gene Symbol Synonym(s)=OsHXA701%2C HXA701%2C ADA2;Oryzabase Gene Name Synonym(s)=SWIRM domain-containing protein HXA701;Note=Similar to cDNA clone:J023128E10%2C full insert sequence.;Transcript_evidence=AK066914 (DDBJ%2C Best hit);ORF_evidence=B7EL06 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Homeodomain-like (IPR009057);NIAS_FLcDNA=J013089I21;Oryzabase=12525;Expression=AK066914;TENOR=Os03t0750800-03;KEGG=Os03t0750800-03
Chr03	irgsp1_rep	five_prime_UTR	30941852	30941853	.	-	.	Parent=Os03t0750800-03
Chr03	irgsp1_rep	CDS	30941804	30941851	.	-	0	Parent=Os03t0750800-03
Chr03	irgsp1_rep	CDS	30941631	30941706	.	-	0	Parent=Os03t0750800-03
Chr03	irgsp1_rep	CDS	30939076	30939142	.	-	2	Parent=Os03t0750800-03
Chr03	irgsp1_rep	CDS	30938936	30938994	.	-	1	Parent=Os03t0750800-03
Chr03	irgsp1_rep	CDS	30938751	30938816	.	-	2	Parent=Os03t0750800-03
Chr03	irgsp1_rep	CDS	30938049	30938271	.	-	2	Parent=Os03t0750800-03
Chr03	irgsp1_rep	CDS	30937538	30937748	.	-	1	Parent=Os03t0750800-03
Chr03	irgsp1_rep	CDS	30936376	30936690	.	-	0	Parent=Os03t0750800-03
Chr03	irgsp1_rep	CDS	30936050	30936256	.	-	0	Parent=Os03t0750800-03
Chr03	irgsp1_rep	three_prime_UTR	30935642	30936049	.	-	.	Parent=Os03t0750800-03
Chr03	irgsp1_rep	mRNA	30945220	30945964	.	-	.	ID=Os03t0750900-00;Name=Os03t0750900-00;Locus_id=Os03g0750900;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q75LL7 (UniProt);TENOR=Os03t0750900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	30945479	30945964	.	-	0	Parent=Os03t0750900-00
Chr03	irgsp1_rep	CDS	30945220	30945390	.	-	0	Parent=Os03t0750900-00
Chr03	irgsp1_rep	mRNA	30949749	30950760	.	+	.	ID=Os03t0751000-01;Name=Os03t0751000-01;Locus_id=Os03g0751000;Note=Protein of unknown function DUF423 family protein.;Transcript_evidence=AK062777 (DDBJ%2C Best hit);ORF_evidence=B8AJW9 (UniProt);InterPro=Protein of unknown function DUF423 (IPR006696);NIAS_FLcDNA=001-107-A10;Expression=AK062777;TENOR=Os03t0751000-01;KEGG=Os03t0751000-01
Chr03	irgsp1_rep	five_prime_UTR	30949749	30949808	.	+	.	Parent=Os03t0751000-01
Chr03	irgsp1_rep	CDS	30949809	30949875	.	+	0	Parent=Os03t0751000-01
Chr03	irgsp1_rep	CDS	30949970	30950040	.	+	2	Parent=Os03t0751000-01
Chr03	irgsp1_rep	CDS	30950157	30950237	.	+	0	Parent=Os03t0751000-01
Chr03	irgsp1_rep	CDS	30950319	30950362	.	+	0	Parent=Os03t0751000-01
Chr03	irgsp1_rep	CDS	30950510	30950609	.	+	1	Parent=Os03t0751000-01
Chr03	irgsp1_rep	three_prime_UTR	30950610	30950760	.	+	.	Parent=Os03t0751000-01
Chr03	irgsp1_rep	mRNA	30959746	30963711	.	-	.	ID=Os03t0751100-01;Name=Os03t0751100-01;Locus_id=Os03g0751100;RAP-DB Gene Symbol Synonym(s)=OPT%2C OsOPT7%2C OPT7;RAP-DB Gene Name Synonym(s)=Oligopeptide Transporter%2C Oligopeptide Transporter 7;Oryzabase Gene Symbol Synonym(s)=OPT%2C OsOPT7%2C OPT7;Oryzabase Gene Name Synonym(s)=Oligopeptide Transporter%2C Oligopeptide Transporter 7;Note=Iron-deficiency-regulated oligopeptide transporter%2C Iron homeostasis;Transcript_evidence=AK102404;ORF_evidence=Q75LM0;GO=Biological Process: transmembrane transport (GO:0055085);InterPro=Oligopeptide transporter%2C OPT superfamily (IPR004813),Tetrapeptide transporter%2C OPT1/isp4 (IPR004648);NIAS_FLcDNA=J033092K11;Manual Curation=September 11%2C 2015;Literature_PMID=25893776;Oryzabase=11214;Expression=AK102404;TENOR=Os03t0751100-01;KEGG=Os03t0751100-01
Chr03	irgsp1_rep	five_prime_UTR	30963562	30963711	.	-	.	Parent=Os03t0751100-01
Chr03	irgsp1_rep	CDS	30963037	30963561	.	-	0	Parent=Os03t0751100-01
Chr03	irgsp1_rep	CDS	30961863	30961960	.	-	0	Parent=Os03t0751100-01
Chr03	irgsp1_rep	CDS	30960917	30961769	.	-	1	Parent=Os03t0751100-01
Chr03	irgsp1_rep	CDS	30960021	30960818	.	-	0	Parent=Os03t0751100-01
Chr03	irgsp1_rep	three_prime_UTR	30959746	30960020	.	-	.	Parent=Os03t0751100-01
Chr03	irgsp1_rep	mRNA	30959826	30961742	.	-	.	ID=Os03t0751100-02;Name=Os03t0751100-02;Locus_id=Os03g0751100;Oryzabase Gene Symbol Synonym(s)=OPT%2C OsOPT7%2C OPT7;Oryzabase Gene Name Synonym(s)=Oligopeptide Transporter%2C Oligopeptide Transporter 7;Note=Similar to Glutathione transporter.;Transcript_evidence=AK071293 (DDBJ%2C Best hit);ORF_evidence=B8YPX7 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085);InterPro=Tetrapeptide transporter%2C OPT1/isp4 (IPR004648),Oligopeptide transporter OPT superfamily (IPR004813);NIAS_FLcDNA=J023085C24;Oryzabase=11214;TENOR=Os03t0751100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	30961742	30961742	.	-	.	Parent=Os03t0751100-02
Chr03	irgsp1_rep	CDS	30960917	30961741	.	-	0	Parent=Os03t0751100-02
Chr03	irgsp1_rep	CDS	30960021	30960818	.	-	0	Parent=Os03t0751100-02
Chr03	irgsp1_rep	three_prime_UTR	30959826	30960020	.	-	.	Parent=Os03t0751100-02
Chr03	irgsp1_rep	mRNA	30960026	30963595	.	+	.	ID=Os03t0751200-00;Name=Os03t0751200-00;Locus_id=Os03g0751200;Note=Hypothetical protein.;Transcript_evidence=tplb0040j04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0751200-00
Chr03	irgsp1_rep	five_prime_UTR	30960026	30960116	.	+	.	Parent=Os03t0751200-00
Chr03	irgsp1_rep	CDS	30960117	30960814	.	+	0	Parent=Os03t0751200-00
Chr03	irgsp1_rep	CDS	30960913	30961759	.	+	1	Parent=Os03t0751200-00
Chr03	irgsp1_rep	CDS	30961871	30961873	.	+	0	Parent=Os03t0751200-00
Chr03	irgsp1_rep	three_prime_UTR	30961874	30961956	.	+	.	Parent=Os03t0751200-00
Chr03	irgsp1_rep	three_prime_UTR	30963031	30963595	.	+	.	Parent=Os03t0751200-00
Chr03	irgsp1_rep	mRNA	30981065	30984498	.	+	.	ID=Os03t0751400-01;Name=Os03t0751400-01;Locus_id=Os03g0751400;Note=Similar to 50S ribosomal protein l6.;Transcript_evidence=AK069033 (DDBJ%2C Best hit);ORF_evidence=NP_001148555.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735),Molecular Function: rRNA binding (GO:0019843);InterPro=Ribosomal protein L6 (IPR000702),Ribosomal protein L6%2C conserved site (IPR002358),Ribosomal protein L6%2C bacterial-type (IPR019906),Ribosomal protein L6%2C alpha-beta domain (IPR020040);NIAS_FLcDNA=J023004G24;Expression=AK069033;TENOR=Os03t0751400-01;KEGG=Os03t0751400-01
Chr03	irgsp1_rep	five_prime_UTR	30981065	30981108	.	+	.	Parent=Os03t0751400-01
Chr03	irgsp1_rep	CDS	30981109	30981143	.	+	0	Parent=Os03t0751400-01
Chr03	irgsp1_rep	CDS	30982563	30982871	.	+	1	Parent=Os03t0751400-01
Chr03	irgsp1_rep	CDS	30984011	30984347	.	+	1	Parent=Os03t0751400-01
Chr03	irgsp1_rep	three_prime_UTR	30984348	30984498	.	+	.	Parent=Os03t0751400-01
Chr03	irgsp1_rep	mRNA	30989898	30991596	.	+	.	ID=Os03t0751600-01;Name=Os03t0751600-01;Locus_id=Os03g0751600;Note=Similar to Circumsporozoite protein.;Transcript_evidence=AK061520 (DDBJ%2C Best hit);ORF_evidence=B6TF33 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);NIAS_FLcDNA=006-310-A12;TENOR=Os03t0751600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	30989898	30990086	.	+	.	Parent=Os03t0751600-01
Chr03	irgsp1_rep	CDS	30990536	30990620	.	+	0	Parent=Os03t0751600-01
Chr03	irgsp1_rep	CDS	30990739	30991361	.	+	2	Parent=Os03t0751600-01
Chr03	irgsp1_rep	three_prime_UTR	30991362	30991596	.	+	.	Parent=Os03t0751600-01
Chr03	irgsp1_rep	mRNA	30989987	30991567	.	+	.	ID=Os03t0751600-02;Name=Os03t0751600-02;Locus_id=Os03g0751600;Note=Similar to Circumsporozoite protein.;Transcript_evidence=AK104665 (DDBJ%2C Best hit);ORF_evidence=B6TF33 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);NIAS_FLcDNA=006-311-G12;TENOR=Os03t0751600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	30989987	30990086	.	+	.	Parent=Os03t0751600-02
Chr03	irgsp1_rep	CDS	30990536	30990620	.	+	0	Parent=Os03t0751600-02
Chr03	irgsp1_rep	CDS	30990739	30991361	.	+	2	Parent=Os03t0751600-02
Chr03	irgsp1_rep	three_prime_UTR	30991362	30991567	.	+	.	Parent=Os03t0751600-02
Chr03	irgsp1_rep	mRNA	30994449	30996793	.	-	.	ID=Os03t0751800-01;Name=Os03t0751800-01;Locus_id=Os03g0751800;Note=Conserved hypothetical protein.;Transcript_evidence=AK067044 (DDBJ%2C Best hit);ORF_evidence=NP_001045303.1 (RefSeq);NIAS_FLcDNA=J013089L14;TENOR=Os03t0751800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	30996386	30996793	.	-	.	Parent=Os03t0751800-01
Chr03	irgsp1_rep	five_prime_UTR	30994906	30996298	.	-	.	Parent=Os03t0751800-01
Chr03	irgsp1_rep	CDS	30994801	30994905	.	-	0	Parent=Os03t0751800-01
Chr03	irgsp1_rep	three_prime_UTR	30994449	30994800	.	-	.	Parent=Os03t0751800-01
Chr03	irgsp1_rep	mRNA	31000528	31004703	.	-	.	ID=Os03t0752000-01;Name=Os03t0752000-01;Locus_id=Os03g0752000;Note=Conserved hypothetical protein.;Transcript_evidence=AK121199 (DDBJ%2C Best hit);ORF_evidence=Q8GSZ6 (UniProt);NIAS_FLcDNA=J023087G06;Expression=AK121199;TENOR=Os03t0752000-01;KEGG=Os03t0752000-01
Chr03	irgsp1_rep	five_prime_UTR	31004016	31004703	.	-	.	Parent=Os03t0752000-01
Chr03	irgsp1_rep	CDS	31003854	31004015	.	-	0	Parent=Os03t0752000-01
Chr03	irgsp1_rep	three_prime_UTR	31000528	31003853	.	-	.	Parent=Os03t0752000-01
Chr03	irgsp1_rep	mRNA	31004724	31009758	.	+	.	ID=Os03t0752100-01;Name=Os03t0752100-01;Locus_id=Os03g0752100;RAP-DB Gene Symbol Synonym(s)=PHYC;RAP-DB Gene Name Synonym(s)=PHYTOCHROME C;CGSNL Gene Symbol=PHYC;CGSNL Gene Name=PHYTOCHROME C;Oryzabase Gene Symbol Synonym(s)=OsPHYC%2C OsPHYCa%2C OsPHYCb;Oryzabase Gene Name Synonym(s)=PhytoChromeC%2C PhytoChrome C;Note=PhytoChrome C%2C Control of deetiolation and flowering%2C Photoperception of continuous far-red light;Transcript_evidence=AB018442;ORF_evidence=Q10CQ8;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Biological Process: signal transduction (GO:0007165),Biological Process: detection of visible light (GO:0009584),Biological Process: red%2C far-red light phototransduction (GO:0009585),Biological Process: protein-tetrapyrrole linkage (GO:0017006),Biological Process: protein-Chromophore linkage (GO:0018298),Molecular Function: phosphorelay sensor kinase activity (GO:0000155),Molecular Function: protein binding (GO:0005515),Molecular Function: photoreceptor activity (GO:0009881),Molecular Function: protein homodimerization activity (GO:0042803);InterPro=PhytoChrome (IPR001294),PhytoChrome A/B/C/D/E (IPR012129),PAS fold-2 (IPR013654),PAS domain (IPR000014),GAF domain-like (IPR029016),GAF domain (IPR003018),PhytoChrome Chromophore attachment domain (IPR016132),PhytoChrome%2C central region (IPR013515),PAS fold (IPR013767),Signal transduction histidine kinase%2C dimerisation/phosphoacceptor domain (IPR003661),Histidine kinase domain (IPR005467),Histidine kinase-like ATPase%2C C-terminal domain (IPR003594),PhytoChrome Chromophore binding site (IPR013516);Manual Curation=September 12%2C 2017;Literature_PMID=16278346;Oryzabase=6319;TENOR=Os03t0752100-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	31004724	31005022	.	+	.	Parent=Os03t0752100-01
Chr03	irgsp1_rep	CDS	31005023	31007087	.	+	0	Parent=Os03t0752100-01
Chr03	irgsp1_rep	CDS	31007192	31008008	.	+	2	Parent=Os03t0752100-01
Chr03	irgsp1_rep	CDS	31008402	31008695	.	+	1	Parent=Os03t0752100-01
Chr03	irgsp1_rep	CDS	31009254	31009491	.	+	1	Parent=Os03t0752100-01
Chr03	irgsp1_rep	three_prime_UTR	31009492	31009758	.	+	.	Parent=Os03t0752100-01
Chr03	irgsp1_rep	mRNA	31009978	31013895	.	+	.	ID=Os03t0752200-01;Name=Os03t0752200-01;Locus_id=Os03g0752200;RAP-DB Gene Symbol Synonym(s)=OsSPO11-1%2C OsTOP6A1;RAP-DB Gene Name Synonym(s)=topoisomerase 6 subunit A1;CGSNL Gene Symbol=TOP6A1;CGSNL Gene Name=TOPOISOMERASE 6 SUBUNIT A1;Oryzabase Gene Symbol Synonym(s)=OsTOP6A1%2C OsSPO11-1%2C OsSPO11A%2C SPO11-1;Oryzabase Gene Name Synonym(s)=topoisomerase 6 subunit A1%2C sporulation protein11-1;Note=Homolog of a subunit of archaebacterial topoisomerase VIA%2C Homologous Chromosomes pairing and crossover formation during meiosis;Transcript_evidence=AK287862;ORF_evidence=Q7Y021;GO=Biological Process: DNA catabolic process%2C endonucleolytic (GO:0000737),Biological Process: DNA metabolic process (GO:0006259),Molecular Function: DNA binding (GO:0003677),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524),Molecular Function: endodeoxyribonuclease activity%2C producing 3'-phosphomonoesters (GO:0016889),Cellular Component: Chromosome (GO:0005694);InterPro=Winged helix-like DNA-binding domain superfamily (IPR036388),Spo11/DNA topoisomerase VI subunit A superfamily (IPR036078),Spo11/DNA topoisomerase VI subunit A (IPR002815),Meiotic recombination%2C Spo11 (IPR013048),Spo11/DNA topoisomerase VI%2C subunit A%2C N-terminal (IPR013049),Topoisomerase 6 subunit A/Spo11%2C TOPRIM domain (IPR034136);NIAS_FLcDNA=J065199O13;Manual Curation=August 27%2C 2020;Literature_PMID=32842152,20625906;Oryzabase=8388;TENOR=Os03t0752200-01;KEGG=Os03t0752200-01
Chr03	irgsp1_rep	five_prime_UTR	31009978	31010024	.	+	.	Parent=Os03t0752200-01
Chr03	irgsp1_rep	CDS	31010025	31010124	.	+	0	Parent=Os03t0752200-01
Chr03	irgsp1_rep	CDS	31010219	31010330	.	+	2	Parent=Os03t0752200-01
Chr03	irgsp1_rep	CDS	31010408	31010484	.	+	1	Parent=Os03t0752200-01
Chr03	irgsp1_rep	CDS	31010571	31010672	.	+	2	Parent=Os03t0752200-01
Chr03	irgsp1_rep	CDS	31010767	31010840	.	+	2	Parent=Os03t0752200-01
Chr03	irgsp1_rep	CDS	31011075	31011091	.	+	0	Parent=Os03t0752200-01
Chr03	irgsp1_rep	CDS	31011381	31011450	.	+	1	Parent=Os03t0752200-01
Chr03	irgsp1_rep	CDS	31011538	31011574	.	+	0	Parent=Os03t0752200-01
Chr03	irgsp1_rep	CDS	31012050	31012097	.	+	2	Parent=Os03t0752200-01
Chr03	irgsp1_rep	CDS	31012190	31012248	.	+	2	Parent=Os03t0752200-01
Chr03	irgsp1_rep	CDS	31012338	31012367	.	+	0	Parent=Os03t0752200-01
Chr03	irgsp1_rep	CDS	31012445	31012552	.	+	0	Parent=Os03t0752200-01
Chr03	irgsp1_rep	CDS	31012944	31013064	.	+	0	Parent=Os03t0752200-01
Chr03	irgsp1_rep	CDS	31013183	31013246	.	+	2	Parent=Os03t0752200-01
Chr03	irgsp1_rep	CDS	31013608	31013734	.	+	1	Parent=Os03t0752200-01
Chr03	irgsp1_rep	three_prime_UTR	31013735	31013895	.	+	.	Parent=Os03t0752200-01
Chr03	irgsp1_rep	mRNA	31014832	31017449	.	-	.	ID=Os03t0752300-01;Name=Os03t0752300-01;Locus_id=Os03g0752300;RAP-DB Gene Symbol Synonym(s)=TPKA%2C TPKa%2C OsTPKa;RAP-DB Gene Name Synonym(s)=TWO-PORE K+ CHANNEL A%2C two-pore K+ channel a;CGSNL Gene Symbol=TPKA;CGSNL Gene Name=TWO-PORE K+ CHANNEL A;Oryzabase Gene Symbol Synonym(s)=TPKa%2C OsTPKa%2C OsTpka%2C TPK1a%2C OsTPK1a;Oryzabase Gene Name Synonym(s)=two-pore K+ channel a;Note=Two-pore K+ channel family protein%2C K+ homeostasis;Transcript_evidence=NM_001057833,AK069303;ORF_evidence=Q850M0;GO=Biological Process: potassium ion transmembrane transport (GO:0071805),Molecular Function: potassium channel activity (GO:0005267),Molecular Function: calcium ion binding (GO:0005509),Cellular Component: membrane (GO:0016020);InterPro=Two pore domain potassium channel (IPR003280),Two pore domain potassium channel domain (IPR013099),EF-hand domain (IPR002048),EF-Hand 1%2C calcium-binding site (IPR018247);NIAS_FLcDNA=J023012L24;Manual Curation=May 2%2C 2011;Literature_PMID=21224427;Oryzabase=9246;Expression=AK069303;TENOR=Os03t0752300-01;KEGG=Os03t0752300-01
Chr03	irgsp1_rep	five_prime_UTR	31017105	31017449	.	-	.	Parent=Os03t0752300-01
Chr03	irgsp1_rep	five_prime_UTR	31016207	31016244	.	-	.	Parent=Os03t0752300-01
Chr03	irgsp1_rep	CDS	31015317	31016206	.	-	0	Parent=Os03t0752300-01
Chr03	irgsp1_rep	CDS	31015077	31015230	.	-	1	Parent=Os03t0752300-01
Chr03	irgsp1_rep	three_prime_UTR	31014832	31015076	.	-	.	Parent=Os03t0752300-01
Chr03	irgsp1_rep	mRNA	31018672	31019582	.	-	.	ID=Os03t0752400-00;Name=Os03t0752400-00;Locus_id=Os03g0752400;Note=Hypothetical conserved gene.;Transcript_evidence=CT835239 (DDBJ%2C Best hit);ORF_evidence=B8AJX4 (UniProt);TENOR=Os03t0752400-00;KEGG=Os03t0752400-00
Chr03	irgsp1_rep	five_prime_UTR	31019582	31019582	.	-	.	Parent=Os03t0752400-00
Chr03	irgsp1_rep	CDS	31018898	31019581	.	-	0	Parent=Os03t0752400-00
Chr03	irgsp1_rep	three_prime_UTR	31018672	31018897	.	-	.	Parent=Os03t0752400-00
Chr03	irgsp1_rep	mRNA	31023843	31024271	.	+	.	ID=Os03t0752500-01;Name=Os03t0752500-01;Locus_id=Os03g0752500;Note=Similar to Cysteine proteinase (Fragment).;Transcript_evidence=AK063100 (DDBJ%2C Best hit);ORF_evidence=Q84JG7 (UniProt);NIAS_FLcDNA=001-111-C06;Oryzabase=14987;Expression=AK063100;TENOR=Os03t0752500-01;KEGG=Os03t0752500-01
Chr03	irgsp1_rep	five_prime_UTR	31023843	31023844	.	+	.	Parent=Os03t0752500-01
Chr03	irgsp1_rep	CDS	31023845	31024015	.	+	0	Parent=Os03t0752500-01
Chr03	irgsp1_rep	three_prime_UTR	31024016	31024271	.	+	.	Parent=Os03t0752500-01
Chr03	irgsp1_rep	mRNA	31027540	31031647	.	+	.	ID=Os03t0752700-01;Name=Os03t0752700-01;Locus_id=Os03g0752700;Oryzabase Gene Symbol Synonym(s)=OsDjC33;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C33;Note=Heat shock protein DnaJ%2C N-terminal domain containing protein.;Transcript_evidence=AK122157 (DDBJ%2C Best hit);ORF_evidence=A3AMS2 (UniProt);GO=Molecular Function: heat shock protein binding (GO:0031072);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623);NIAS_FLcDNA=J033145P19;Oryzabase=12190;Expression=AK122157;TENOR=Os03t0752700-01;KEGG=Os03t0752700-01
Chr03	irgsp1_rep	five_prime_UTR	31027540	31027960	.	+	.	Parent=Os03t0752700-01
Chr03	irgsp1_rep	CDS	31027961	31029415	.	+	0	Parent=Os03t0752700-01
Chr03	irgsp1_rep	CDS	31029681	31029794	.	+	0	Parent=Os03t0752700-01
Chr03	irgsp1_rep	CDS	31029941	31030072	.	+	0	Parent=Os03t0752700-01
Chr03	irgsp1_rep	CDS	31031127	31031264	.	+	0	Parent=Os03t0752700-01
Chr03	irgsp1_rep	three_prime_UTR	31031265	31031647	.	+	.	Parent=Os03t0752700-01
Chr03	irgsp1_rep	mRNA	31034529	31041563	.	-	.	ID=Os03t0752800-01;Name=Os03t0752800-01;Locus_id=Os03g0752800;CGSNL Gene Symbol=RAP1B;CGSNL Gene Name=RICE APETALA 1B;Oryzabase Gene Symbol Synonym(s)=MADS14%2C OsMADS14%2C FDRMADS6%2C RMADS211%2C AGL10;Oryzabase Gene Name Synonym(s)=MADS box gene14%2C MADS-box transcription factor 14%2C Protein APETALA1-like B%2C Protein AGAMOUS-like 10;Note=Similar to Isoform 2 of MADS-box transcription factor 14.;Transcript_evidence=AK121171 (DDBJ%2C Best hit);ORF_evidence=D3U2G7 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box (IPR002100);NIAS_FLcDNA=J023081C04;Oryzabase=3082;Expression=AK121171;TENOR=Os03t0752800-01;KEGG=Os03t0752800-01
Chr03	irgsp1_rep	five_prime_UTR	31041262	31041563	.	-	.	Parent=Os03t0752800-01
Chr03	irgsp1_rep	CDS	31041077	31041261	.	-	0	Parent=Os03t0752800-01
Chr03	irgsp1_rep	CDS	31035558	31035822	.	-	1	Parent=Os03t0752800-01
Chr03	irgsp1_rep	three_prime_UTR	31034529	31035557	.	-	.	Parent=Os03t0752800-01
Chr03	irgsp1_rep	mRNA	31031753	31041548	.	-	.	ID=Os03t0752800-02;Name=Os03t0752800-02;Locus_id=Os03g0752800;RAP-DB Gene Symbol Synonym(s)=MADS14%2C OsMADS14%2C FDRMADS6%2C RMADS211%2C AGL10%2C RAP1B;RAP-DB Gene Name Synonym(s)=MADS BOX GENE 14%2C MADS box gene14%2C MADS-box transcription factor 14%2C Protein APETALA1-like B%2C Protein AGAMOUS-like 10;CGSNL Gene Symbol=RAP1B;CGSNL Gene Name=RICE APETALA 1B;Oryzabase Gene Symbol Synonym(s)=MADS14%2C OsMADS14%2C FDRMADS6%2C RMADS211%2C AGL10;Oryzabase Gene Name Synonym(s)=MADS box gene14%2C MADS-box transcription factor 14%2C Protein APETALA1-like B%2C Protein AGAMOUS-like 10;Note=APETALA1 (AP1)/ FRUITFULL (FUL)-like MADS box transcription factor%2C Specification of inflorescence meristem identity;Transcript_evidence=AF058697;ORF_evidence=Q10CQ1;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein dimerization activity (GO:0046983),Cellular Component: nucleus (GO:0005634);InterPro=Transcription factor%2C MADS-box (IPR002100),Transcription factor%2C K-box (IPR002487);Manual Curation=September 9%2C 2014;Literature_PMID=22570445,10444103;Oryzabase=3082
Chr03	irgsp1_rep	five_prime_UTR	31041262	31041548	.	-	.	Parent=Os03t0752800-02
Chr03	irgsp1_rep	CDS	31041077	31041261	.	-	0	Parent=Os03t0752800-02
Chr03	irgsp1_rep	CDS	31035744	31035822	.	-	1	Parent=Os03t0752800-02
Chr03	irgsp1_rep	CDS	31033521	31033585	.	-	0	Parent=Os03t0752800-02
Chr03	irgsp1_rep	CDS	31033333	31033432	.	-	1	Parent=Os03t0752800-02
Chr03	irgsp1_rep	CDS	31033157	31033198	.	-	0	Parent=Os03t0752800-02
Chr03	irgsp1_rep	CDS	31032905	31032946	.	-	0	Parent=Os03t0752800-02
Chr03	irgsp1_rep	CDS	31032681	31032799	.	-	0	Parent=Os03t0752800-02
Chr03	irgsp1_rep	CDS	31032083	31032191	.	-	1	Parent=Os03t0752800-02
Chr03	irgsp1_rep	three_prime_UTR	31031753	31032082	.	-	.	Parent=Os03t0752800-02
Chr03	irgsp1_rep	mRNA	31048351	31055017	.	-	.	ID=Os03t0753100-01;Name=Os03t0753100-01;Locus_id=Os03g0753100;RAP-DB Gene Symbol Synonym(s)=PAP2%2C MADS34%2C OsMADS34%2C RMADS212/RMADS217/RMADS221%2C OsPAP2/MADS34%2C MADS34/PAP2;RAP-DB Gene Name Synonym(s)=PANICLE PHYTOMER2%2C MADS box gene34%2C MADS-box transcription factor 34%2C panicle phytomer 2;CGSNL Gene Symbol=PAP2;CGSNL Gene Name=PANICLE PHYTOMER2;Oryzabase Gene Symbol Synonym(s)=MADS34%2C OsMADS34%2C RMADS212/RMADS217/RMADS221%2C OsPAP2/MADS34%2C MADS34/PAP2%2C PAP2/OsMADS34%2C OsMADS34/PAP2;Oryzabase Gene Name Synonym(s)=MADS box gene34%2C MADS-box transcription factor 34%2C panicle phytomer 2;Note=MADS-box transcription factor%2C Inflorescence and spikelet development;Transcript_evidence=AK100227 (Genbank),AB003324 (Genbank);ORF_evidence=Q6Q9H6 (UniProt),Q10CQ0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box (IPR002100),Transcription factor%2C K-box (IPR002487);NIAS_FLcDNA=J023048E14;Manual Curation=July 16%2C 2010;Literature_PMID=17640358,20395452;Oryzabase=3099;TENOR=Os03t0753100-01;KEGG=Os03t0753100-01
Chr03	irgsp1_rep	five_prime_UTR	31054735	31055017	.	-	.	Parent=Os03t0753100-01
Chr03	irgsp1_rep	CDS	31054550	31054734	.	-	0	Parent=Os03t0753100-01
Chr03	irgsp1_rep	CDS	31052138	31052219	.	-	1	Parent=Os03t0753100-01
Chr03	irgsp1_rep	CDS	31050645	31050706	.	-	0	Parent=Os03t0753100-01
Chr03	irgsp1_rep	CDS	31050402	31050501	.	-	1	Parent=Os03t0753100-01
Chr03	irgsp1_rep	CDS	31049653	31049694	.	-	0	Parent=Os03t0753100-01
Chr03	irgsp1_rep	CDS	31049483	31049524	.	-	0	Parent=Os03t0753100-01
Chr03	irgsp1_rep	CDS	31048949	31049082	.	-	0	Parent=Os03t0753100-01
Chr03	irgsp1_rep	CDS	31048631	31048703	.	-	1	Parent=Os03t0753100-01
Chr03	irgsp1_rep	three_prime_UTR	31048351	31048630	.	-	.	Parent=Os03t0753100-01
Chr03	irgsp1_rep	mRNA	31077668	31079773	.	-	.	ID=Os03t0753500-01;Name=Os03t0753500-01;Locus_id=Os03g0753500;Note=Protein of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK070136 (DDBJ%2C Best hit),AK100468 (DDBJ%2C Best hit),AK103935 (DDBJ%2C Best hit);ORF_evidence=Q9FNU1 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=J023041E14,J023092M13,001-013-F09;TENOR=Os03t0753500-01
Chr03	irgsp1_rep	five_prime_UTR	31079726	31079773	.	-	.	Parent=Os03t0753500-01
Chr03	irgsp1_rep	CDS	31078273	31079725	.	-	0	Parent=Os03t0753500-01
Chr03	irgsp1_rep	CDS	31077842	31077939	.	-	2	Parent=Os03t0753500-01
Chr03	irgsp1_rep	three_prime_UTR	31077668	31077841	.	-	.	Parent=Os03t0753500-01
Chr03	irgsp1_rep	mRNA	31086259	31087238	.	-	.	ID=Os03t0753600-01;Name=Os03t0753600-01;Locus_id=Os03g0753600;Note=Conserved hypothetical protein.;Transcript_evidence=AK067449 (DDBJ%2C Best hit);ORF_evidence=B9FBV5 (UniProt);NIAS_FLcDNA=J013107L13;TENOR=Os03t0753600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	31086839	31087238	.	-	.	Parent=Os03t0753600-01
Chr03	irgsp1_rep	five_prime_UTR	31086601	31086759	.	-	.	Parent=Os03t0753600-01
Chr03	irgsp1_rep	CDS	31086376	31086600	.	-	0	Parent=Os03t0753600-01
Chr03	irgsp1_rep	three_prime_UTR	31086259	31086375	.	-	.	Parent=Os03t0753600-01
Chr03	irgsp1_rep	mRNA	31082636	31086343	.	-	.	ID=Os03t0753600-03;Name=Os03t0753600-03;Locus_id=Os03g0753600;Note=Hypothetical conserved gene.;Transcript_evidence=AK072118 (DDBJ%2C Best hit),AK071851 (DDBJ%2C Best hit);ORF_evidence=B9FBV5 (UniProt);NIAS_FLcDNA=J013121D19,J023116O21;Expression=AK072118;TENOR=Os03t0753600-03;KEGG=Os03t0753600-03
Chr03	irgsp1_rep	five_prime_UTR	31086206	31086343	.	-	.	Parent=Os03t0753600-03
Chr03	irgsp1_rep	CDS	31085786	31086205	.	-	0	Parent=Os03t0753600-03
Chr03	irgsp1_rep	CDS	31085419	31085445	.	-	0	Parent=Os03t0753600-03
Chr03	irgsp1_rep	three_prime_UTR	31082636	31085418	.	-	.	Parent=Os03t0753600-03
Chr03	irgsp1_rep	mRNA	31085814	31086050	.	+	.	ID=Os03t0753750-00;Name=Os03t0753750-00;Locus_id=Os03g0753750;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B8B9W2 (UniProt);TENOR=Os03t0753750-00;KEGG=Os03t0753750-00
Chr03	irgsp1_rep	CDS	31085814	31086050	.	+	0	Parent=Os03t0753750-00
Chr03	irgsp1_rep	mRNA	31094247	31099057	.	+	.	ID=Os03t0754200-01;Name=Os03t0754200-01;Locus_id=Os03g0754200;Note=Similar to Triosephosphate isomerase.;Transcript_evidence=AK065954 (DDBJ%2C Best hit);ORF_evidence=B0LT90 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: triose-phosphate isomerase activity (GO:0004807);InterPro=Triosephosphate isomerase (IPR000652),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J013044J02;TENOR=Os03t0754200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	31094247	31096000	.	+	.	Parent=Os03t0754200-01
Chr03	irgsp1_rep	five_prime_UTR	31096080	31096186	.	+	.	Parent=Os03t0754200-01
Chr03	irgsp1_rep	five_prime_UTR	31096305	31096400	.	+	.	Parent=Os03t0754200-01
Chr03	irgsp1_rep	five_prime_UTR	31096502	31096590	.	+	.	Parent=Os03t0754200-01
Chr03	irgsp1_rep	five_prime_UTR	31097084	31097102	.	+	.	Parent=Os03t0754200-01
Chr03	irgsp1_rep	CDS	31097103	31097167	.	+	0	Parent=Os03t0754200-01
Chr03	irgsp1_rep	CDS	31097258	31097369	.	+	1	Parent=Os03t0754200-01
Chr03	irgsp1_rep	three_prime_UTR	31097370	31099057	.	+	.	Parent=Os03t0754200-01
Chr03	irgsp1_rep	mRNA	31094255	31097477	.	+	.	ID=Os03t0754200-02;Name=Os03t0754200-02;Locus_id=Os03g0754200;Note=Similar to Triosephosphate isomerase.;Transcript_evidence=AK067890 (DDBJ%2C Best hit);ORF_evidence=B0LT90 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: triose-phosphate isomerase activity (GO:0004807);InterPro=Triosephosphate isomerase (IPR000652),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J013128J06;TENOR=Os03t0754200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	31094255	31095379	.	+	.	Parent=Os03t0754200-02
Chr03	irgsp1_rep	five_prime_UTR	31095841	31096000	.	+	.	Parent=Os03t0754200-02
Chr03	irgsp1_rep	five_prime_UTR	31096232	31096400	.	+	.	Parent=Os03t0754200-02
Chr03	irgsp1_rep	five_prime_UTR	31096502	31096527	.	+	.	Parent=Os03t0754200-02
Chr03	irgsp1_rep	CDS	31096528	31096590	.	+	0	Parent=Os03t0754200-02
Chr03	irgsp1_rep	CDS	31097103	31097167	.	+	0	Parent=Os03t0754200-02
Chr03	irgsp1_rep	CDS	31097258	31097369	.	+	1	Parent=Os03t0754200-02
Chr03	irgsp1_rep	three_prime_UTR	31097370	31097477	.	+	.	Parent=Os03t0754200-02
Chr03	irgsp1_rep	mRNA	31094272	31097595	.	+	.	ID=Os03t0754200-03;Name=Os03t0754200-03;Locus_id=Os03g0754200;Note=Similar to Triosephosphate isomerase.;Transcript_evidence=AK103031 (DDBJ%2C Best hit);ORF_evidence=B0LT90 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: triose-phosphate isomerase activity (GO:0004807);InterPro=Triosephosphate isomerase (IPR000652),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J033117C13;TENOR=Os03t0754200-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	31094272	31095379	.	+	.	Parent=Os03t0754200-03
Chr03	irgsp1_rep	five_prime_UTR	31095477	31096000	.	+	.	Parent=Os03t0754200-03
Chr03	irgsp1_rep	five_prime_UTR	31096080	31096186	.	+	.	Parent=Os03t0754200-03
Chr03	irgsp1_rep	five_prime_UTR	31096305	31096400	.	+	.	Parent=Os03t0754200-03
Chr03	irgsp1_rep	five_prime_UTR	31096502	31096527	.	+	.	Parent=Os03t0754200-03
Chr03	irgsp1_rep	CDS	31096528	31096590	.	+	0	Parent=Os03t0754200-03
Chr03	irgsp1_rep	CDS	31097103	31097167	.	+	0	Parent=Os03t0754200-03
Chr03	irgsp1_rep	CDS	31097258	31097369	.	+	1	Parent=Os03t0754200-03
Chr03	irgsp1_rep	three_prime_UTR	31097370	31097595	.	+	.	Parent=Os03t0754200-03
Chr03	irgsp1_rep	mRNA	31103970	31106962	.	+	.	ID=Os03t0754300-01;Name=Os03t0754300-01;Locus_id=Os03g0754300;Note=Conserved hypothetical protein.;Transcript_evidence=AK288070 (DDBJ%2C Best hit);ORF_evidence=Q6Z9T1 (UniProt);NIAS_FLcDNA=J075160F05;TENOR=Os03t0754300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	31103970	31105062	.	+	.	Parent=Os03t0754300-01
Chr03	irgsp1_rep	CDS	31105063	31105068	.	+	0	Parent=Os03t0754300-01
Chr03	irgsp1_rep	CDS	31105146	31105325	.	+	0	Parent=Os03t0754300-01
Chr03	irgsp1_rep	three_prime_UTR	31105326	31106962	.	+	.	Parent=Os03t0754300-01
Chr03	irgsp1_rep	mRNA	31125147	31126654	.	-	.	ID=Os03t0754500-00;Name=Os03t0754500-00;Locus_id=Os03g0754500;CGSNL Gene Symbol=BC1L3;CGSNL Gene Name=BRITTLE CULM-LIKE 3;Oryzabase Gene Symbol Synonym(s)=OsBC1L3%2C OsPCS14%2C PCS14;Oryzabase Gene Name Synonym(s)=BRITTLE CULM1-like 3%2C Phytochelatin synthase 14;Note=Similar to COBRA-like protein 3.;Transcript_evidence=ab initio prediction;ORF_evidence=Q60E70 (UniProt);InterPro=Glycosyl-phosphatidyl inositol-anchored%2C plant (IPR006918);Oryzabase=22984;TENOR=Os03t0754500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	31126555	31126654	.	-	0	Parent=Os03t0754500-00
Chr03	irgsp1_rep	CDS	31125854	31125933	.	-	2	Parent=Os03t0754500-00
Chr03	irgsp1_rep	CDS	31125147	31125611	.	-	0	Parent=Os03t0754500-00
Chr03	irgsp1_rep	mRNA	31130170	31133651	.	+	.	ID=Os03t0754800-01;Name=Os03t0754800-01;Locus_id=Os03g0754800;Note=Mitochondrial substrate carrier family protein.;Transcript_evidence=AK101584 (DDBJ%2C Best hit);ORF_evidence=B6TV90 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial inner membrane (GO:0005743),Molecular Function: binding (GO:0005488);InterPro=Mitochondrial carrier protein (IPR002067),Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J033050O16;Expression=AK101584;TENOR=Os03t0754800-01;KEGG=Os03t0754800-01
Chr03	irgsp1_rep	five_prime_UTR	31130170	31130480	.	+	.	Parent=Os03t0754800-01
Chr03	irgsp1_rep	CDS	31130481	31130545	.	+	0	Parent=Os03t0754800-01
Chr03	irgsp1_rep	CDS	31130993	31131374	.	+	1	Parent=Os03t0754800-01
Chr03	irgsp1_rep	CDS	31131482	31131678	.	+	0	Parent=Os03t0754800-01
Chr03	irgsp1_rep	CDS	31131771	31131912	.	+	1	Parent=Os03t0754800-01
Chr03	irgsp1_rep	CDS	31132686	31132833	.	+	0	Parent=Os03t0754800-01
Chr03	irgsp1_rep	CDS	31133189	31133220	.	+	2	Parent=Os03t0754800-01
Chr03	irgsp1_rep	three_prime_UTR	31133221	31133651	.	+	.	Parent=Os03t0754800-01
Chr03	irgsp1_rep	mRNA	31134446	31139659	.	+	.	ID=Os03t0754900-01;Name=Os03t0754900-01;Locus_id=Os03g0754900;Oryzabase Gene Symbol Synonym(s)=OsWD40-93;Note=Similar to Cleavage stimulation factor%2C 50 kDa subunit.;Transcript_evidence=AK101437 (DDBJ%2C Best hit);ORF_evidence=B4FBI9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J033039C05;Oryzabase=10774;Expression=AK101437;TENOR=Os03t0754900-01;KEGG=Os03t0754900-01
Chr03	irgsp1_rep	five_prime_UTR	31134446	31134595	.	+	.	Parent=Os03t0754900-01
Chr03	irgsp1_rep	CDS	31134596	31134787	.	+	0	Parent=Os03t0754900-01
Chr03	irgsp1_rep	CDS	31134913	31135031	.	+	0	Parent=Os03t0754900-01
Chr03	irgsp1_rep	CDS	31135141	31135210	.	+	1	Parent=Os03t0754900-01
Chr03	irgsp1_rep	CDS	31135477	31135560	.	+	0	Parent=Os03t0754900-01
Chr03	irgsp1_rep	CDS	31135657	31135743	.	+	0	Parent=Os03t0754900-01
Chr03	irgsp1_rep	CDS	31135830	31135900	.	+	0	Parent=Os03t0754900-01
Chr03	irgsp1_rep	CDS	31136047	31136098	.	+	1	Parent=Os03t0754900-01
Chr03	irgsp1_rep	CDS	31136206	31136304	.	+	0	Parent=Os03t0754900-01
Chr03	irgsp1_rep	three_prime_UTR	31136305	31138502	.	+	.	Parent=Os03t0754900-01
Chr03	irgsp1_rep	three_prime_UTR	31138583	31138756	.	+	.	Parent=Os03t0754900-01
Chr03	irgsp1_rep	three_prime_UTR	31138834	31138942	.	+	.	Parent=Os03t0754900-01
Chr03	irgsp1_rep	three_prime_UTR	31139160	31139216	.	+	.	Parent=Os03t0754900-01
Chr03	irgsp1_rep	three_prime_UTR	31139312	31139659	.	+	.	Parent=Os03t0754900-01
Chr03	irgsp1_rep	mRNA	31134469	31139684	.	+	.	ID=Os03t0754900-02;Name=Os03t0754900-02;Locus_id=Os03g0754900;Oryzabase Gene Symbol Synonym(s)=OsWD40-93;Note=Similar to Cleavage stimulation factor%2C 50 kDa subunit.;Transcript_evidence=AK106405 (DDBJ%2C Best hit);ORF_evidence=B4FBI9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=002-102-H01;Oryzabase=10774;TENOR=Os03t0754900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	31134469	31134595	.	+	.	Parent=Os03t0754900-02
Chr03	irgsp1_rep	CDS	31134596	31134787	.	+	0	Parent=Os03t0754900-02
Chr03	irgsp1_rep	CDS	31134913	31135031	.	+	0	Parent=Os03t0754900-02
Chr03	irgsp1_rep	CDS	31135141	31135210	.	+	1	Parent=Os03t0754900-02
Chr03	irgsp1_rep	CDS	31135477	31135560	.	+	0	Parent=Os03t0754900-02
Chr03	irgsp1_rep	CDS	31135657	31135743	.	+	0	Parent=Os03t0754900-02
Chr03	irgsp1_rep	CDS	31135830	31135900	.	+	0	Parent=Os03t0754900-02
Chr03	irgsp1_rep	CDS	31136047	31136098	.	+	1	Parent=Os03t0754900-02
Chr03	irgsp1_rep	CDS	31136206	31136263	.	+	0	Parent=Os03t0754900-02
Chr03	irgsp1_rep	CDS	31138408	31138502	.	+	2	Parent=Os03t0754900-02
Chr03	irgsp1_rep	CDS	31138602	31138756	.	+	0	Parent=Os03t0754900-02
Chr03	irgsp1_rep	CDS	31138834	31138942	.	+	1	Parent=Os03t0754900-02
Chr03	irgsp1_rep	CDS	31139160	31139216	.	+	0	Parent=Os03t0754900-02
Chr03	irgsp1_rep	CDS	31139312	31139467	.	+	0	Parent=Os03t0754900-02
Chr03	irgsp1_rep	three_prime_UTR	31139468	31139684	.	+	.	Parent=Os03t0754900-02
Chr03	irgsp1_rep	mRNA	31140050	31148968	.	+	.	ID=Os03t0755000-01;Name=Os03t0755000-01;Locus_id=Os03g0755000;Note=Similar to Serine/threonine kinase (Fragment).;Transcript_evidence=AK068540 (DDBJ%2C Best hit);ORF_evidence=B3GK00 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013155F13;Expression=AK068540;TENOR=Os03t0755000-01;KEGG=Os03t0755000-01
Chr03	irgsp1_rep	five_prime_UTR	31140050	31140098	.	+	.	Parent=Os03t0755000-01
Chr03	irgsp1_rep	CDS	31140099	31140900	.	+	0	Parent=Os03t0755000-01
Chr03	irgsp1_rep	CDS	31140999	31141087	.	+	2	Parent=Os03t0755000-01
Chr03	irgsp1_rep	CDS	31141714	31141821	.	+	0	Parent=Os03t0755000-01
Chr03	irgsp1_rep	CDS	31141949	31142056	.	+	0	Parent=Os03t0755000-01
Chr03	irgsp1_rep	CDS	31142286	31142376	.	+	0	Parent=Os03t0755000-01
Chr03	irgsp1_rep	CDS	31142634	31142686	.	+	2	Parent=Os03t0755000-01
Chr03	irgsp1_rep	CDS	31144162	31144224	.	+	0	Parent=Os03t0755000-01
Chr03	irgsp1_rep	CDS	31144890	31144934	.	+	0	Parent=Os03t0755000-01
Chr03	irgsp1_rep	CDS	31145057	31145092	.	+	0	Parent=Os03t0755000-01
Chr03	irgsp1_rep	CDS	31145474	31145529	.	+	0	Parent=Os03t0755000-01
Chr03	irgsp1_rep	CDS	31146450	31146531	.	+	1	Parent=Os03t0755000-01
Chr03	irgsp1_rep	CDS	31146637	31146753	.	+	0	Parent=Os03t0755000-01
Chr03	irgsp1_rep	CDS	31146836	31146929	.	+	0	Parent=Os03t0755000-01
Chr03	irgsp1_rep	CDS	31147311	31147461	.	+	2	Parent=Os03t0755000-01
Chr03	irgsp1_rep	CDS	31147579	31147816	.	+	1	Parent=Os03t0755000-01
Chr03	irgsp1_rep	CDS	31147963	31148163	.	+	0	Parent=Os03t0755000-01
Chr03	irgsp1_rep	CDS	31148249	31148334	.	+	0	Parent=Os03t0755000-01
Chr03	irgsp1_rep	CDS	31148435	31148534	.	+	1	Parent=Os03t0755000-01
Chr03	irgsp1_rep	three_prime_UTR	31148535	31148968	.	+	.	Parent=Os03t0755000-01
Chr03	irgsp1_rep	mRNA	31149940	31155280	.	+	.	ID=Os03t0755100-01;Name=Os03t0755100-01;Locus_id=Os03g0755100;RAP-DB Gene Symbol Synonym(s)=ALS1%2C OsALS1%2C OsABCB25;RAP-DB Gene Name Synonym(s)=ALUMINUM SENSITIVE 1%2C ABC transporter superfamily ABCB subgroup member 25;CGSNL Gene Symbol=ALS1;CGSNL Gene Name=ALUMINUM SENSITIVE 1;Oryzabase Gene Symbol Synonym(s)=OsALS1%2C OsABCB25%2C ABCB25;Oryzabase Gene Name Synonym(s)=ALUMINUM SENSITIVE 1%2C ABC transporter superfamily ABCB subgroup member 25;Note=Half-size ABC transporter%2C Internal detoxification of aluminum;Transcript_evidence=AB625451 (Koshihikari),AK066049;ORF_evidence=Q9FNU2,I0IVW0;GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626),Cellular Component: integral component of membrane (GO:0016021);InterPro=ABC transporter type 1%2C transmembrane domain (IPR011527),P-loop containing nucleoside triphosphate hydrolase (IPR027417),ABC transporter-like (IPR003439),AAA+ ATPase domain (IPR003593),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=J013049O12;Manual Curation=March 16%2C 2015;Literature_PMID=22035218;Oryzabase=10021;TENOR=Os03t0755100-01
Chr03	irgsp1_rep	five_prime_UTR	31149940	31150068	.	+	.	Parent=Os03t0755100-01
Chr03	irgsp1_rep	CDS	31150069	31150125	.	+	0	Parent=Os03t0755100-01
Chr03	irgsp1_rep	CDS	31150257	31150304	.	+	0	Parent=Os03t0755100-01
Chr03	irgsp1_rep	CDS	31150444	31150479	.	+	0	Parent=Os03t0755100-01
Chr03	irgsp1_rep	CDS	31150583	31150657	.	+	0	Parent=Os03t0755100-01
Chr03	irgsp1_rep	CDS	31150967	31151091	.	+	0	Parent=Os03t0755100-01
Chr03	irgsp1_rep	CDS	31151329	31151425	.	+	1	Parent=Os03t0755100-01
Chr03	irgsp1_rep	CDS	31151521	31151695	.	+	0	Parent=Os03t0755100-01
Chr03	irgsp1_rep	CDS	31151946	31152064	.	+	2	Parent=Os03t0755100-01
Chr03	irgsp1_rep	CDS	31152267	31152377	.	+	0	Parent=Os03t0755100-01
Chr03	irgsp1_rep	CDS	31152452	31152596	.	+	0	Parent=Os03t0755100-01
Chr03	irgsp1_rep	CDS	31152739	31152871	.	+	2	Parent=Os03t0755100-01
Chr03	irgsp1_rep	CDS	31152944	31153019	.	+	1	Parent=Os03t0755100-01
Chr03	irgsp1_rep	CDS	31153540	31153605	.	+	0	Parent=Os03t0755100-01
Chr03	irgsp1_rep	CDS	31153707	31153814	.	+	0	Parent=Os03t0755100-01
Chr03	irgsp1_rep	CDS	31154149	31154256	.	+	0	Parent=Os03t0755100-01
Chr03	irgsp1_rep	CDS	31154347	31154544	.	+	0	Parent=Os03t0755100-01
Chr03	irgsp1_rep	CDS	31154742	31154990	.	+	0	Parent=Os03t0755100-01
Chr03	irgsp1_rep	three_prime_UTR	31154991	31155280	.	+	.	Parent=Os03t0755100-01
Chr03	irgsp1_rep	mRNA	31150256	31154990	.	-	.	ID=Os03t0755150-00;Name=Os03t0755150-00;Locus_id=Os03g0755150;Note=Non-protein coding transcript.;Transcript_evidence=tplb0044a23 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os03t0755150-00
Chr03	irgsp1_rep	exon	31154740	31154990	.	-	.	Parent=Os03t0755150-00
Chr03	irgsp1_rep	exon	31154335	31154548	.	-	.	Parent=Os03t0755150-00
Chr03	irgsp1_rep	exon	31154152	31154254	.	-	.	Parent=Os03t0755150-00
Chr03	irgsp1_rep	exon	31153712	31153817	.	-	.	Parent=Os03t0755150-00
Chr03	irgsp1_rep	exon	31153548	31153612	.	-	.	Parent=Os03t0755150-00
Chr03	irgsp1_rep	exon	31152944	31153031	.	-	.	Parent=Os03t0755150-00
Chr03	irgsp1_rep	exon	31152736	31152870	.	-	.	Parent=Os03t0755150-00
Chr03	irgsp1_rep	exon	31152452	31152593	.	-	.	Parent=Os03t0755150-00
Chr03	irgsp1_rep	exon	31152245	31152377	.	-	.	Parent=Os03t0755150-00
Chr03	irgsp1_rep	exon	31151924	31152047	.	-	.	Parent=Os03t0755150-00
Chr03	irgsp1_rep	exon	31151502	31151677	.	-	.	Parent=Os03t0755150-00
Chr03	irgsp1_rep	exon	31151341	31151416	.	-	.	Parent=Os03t0755150-00
Chr03	irgsp1_rep	exon	31150965	31151098	.	-	.	Parent=Os03t0755150-00
Chr03	irgsp1_rep	exon	31150563	31150651	.	-	.	Parent=Os03t0755150-00
Chr03	irgsp1_rep	exon	31150256	31150326	.	-	.	Parent=Os03t0755150-00
Chr03	irgsp1_rep	mRNA	31176721	31179008	.	+	.	ID=Os03t0755600-00;Name=Os03t0755600-00;Locus_id=Os03g0755600;Note=Similar to 36I5.7.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001173645.1 (RefSeq);TENOR=Os03t0755600-00;KEGG=Os03t0755600-00
Chr03	irgsp1_rep	CDS	31176721	31176856	.	+	0	Parent=Os03t0755600-00
Chr03	irgsp1_rep	CDS	31177150	31178114	.	+	2	Parent=Os03t0755600-00
Chr03	irgsp1_rep	CDS	31178565	31178750	.	+	0	Parent=Os03t0755600-00
Chr03	irgsp1_rep	CDS	31178979	31179008	.	+	0	Parent=Os03t0755600-00
Chr03	irgsp1_rep	mRNA	31179872	31180829	.	-	.	ID=Os03t0755625-00;Name=Os03t0755625-00;Locus_id=Os03g0755625;Note=Hypothetical conserved gene.;Transcript_evidence=tplb0013l17 (Wheat FLcDNA);ORF_evidence=Q75J15 (UniProt);TENOR=Os03t0755625-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	31180757	31180829	.	-	.	Parent=Os03t0755625-00
Chr03	irgsp1_rep	CDS	31180637	31180756	.	-	0	Parent=Os03t0755625-00
Chr03	irgsp1_rep	three_prime_UTR	31179872	31180636	.	-	.	Parent=Os03t0755625-00
Chr03	irgsp1_rep	mRNA	31186884	31190795	.	-	.	ID=Os03t0755700-00;Name=Os03t0755700-00;Locus_id=Os03g0755700;Note=Similar to Ribosomal protein L13a.;Transcript_evidence=CT833550 (DDBJ%2C Best hit);ORF_evidence=Q5I7L1 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L13 (IPR005822),Ribosomal protein L13 domain (IPR023564);TENOR=Os03t0755700-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	31190554	31190795	.	-	.	Parent=Os03t0755700-00
Chr03	irgsp1_rep	CDS	31190480	31190553	.	-	0	Parent=Os03t0755700-00
Chr03	irgsp1_rep	CDS	31190249	31190365	.	-	1	Parent=Os03t0755700-00
Chr03	irgsp1_rep	CDS	31190059	31190146	.	-	1	Parent=Os03t0755700-00
Chr03	irgsp1_rep	CDS	31186930	31187049	.	-	0	Parent=Os03t0755700-00
Chr03	irgsp1_rep	three_prime_UTR	31186884	31186929	.	-	.	Parent=Os03t0755700-00
Chr03	irgsp1_rep	mRNA	31191847	31192765	.	-	.	ID=Os03t0755800-00;Name=Os03t0755800-00;Locus_id=Os03g0755800;Note=Similar to 36I5.7.;Transcript_evidence=AK330449 (DDBJ);ORF_evidence=Q8LPX2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=NLI interacting factor (IPR004274),HAD-like domain (IPR023214);TENOR=Os03t0755800-00;KEGG=Os03t0755800-00
Chr03	irgsp1_rep	CDS	31192604	31192765	.	-	0	Parent=Os03t0755800-00
Chr03	irgsp1_rep	CDS	31192221	31192406	.	-	0	Parent=Os03t0755800-00
Chr03	irgsp1_rep	CDS	31192072	31192132	.	-	0	Parent=Os03t0755800-00
Chr03	irgsp1_rep	CDS	31191847	31191992	.	-	2	Parent=Os03t0755800-00
Chr03	irgsp1_rep	mRNA	31197787	31198029	.	-	.	ID=Os03t0755900-00;Name=Os03t0755900-00;Locus_id=Os03g0755900;Note=Similar to ABC transporter B family member 25.;Transcript_evidence=ab initio prediction;ORF_evidence=Q9FNU2 (UniProt);TENOR=Os03t0755900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	31197787	31198029	.	-	0	Parent=Os03t0755900-00
Chr03	irgsp1_rep	mRNA	31203316	31205287	.	+	.	ID=Os03t0756000-01;Name=Os03t0756000-01;Locus_id=Os03g0756000;Note=Similar to 60S ribosomal protein L13a-4.;Transcript_evidence=AK243083 (DDBJ%2C Best hit),AK103893 (DDBJ%2C Best hit),AK106078 (DDBJ%2C Best hit);ORF_evidence=Q5I7L1 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Cellular Component: large ribosomal subunit (GO:0015934),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L13%2C eukaryotic/archaeal (IPR005755),Ribosomal protein L13 (IPR005822),Ribosomal protein L13%2C conserved site (IPR023563),Ribosomal protein L13 domain (IPR023564);NIAS_FLcDNA=J100020K24,J033150E09,001-207-A04;TENOR=Os03t0756000-01
Chr03	irgsp1_rep	five_prime_UTR	31203316	31203400	.	+	.	Parent=Os03t0756000-01
Chr03	irgsp1_rep	CDS	31203401	31203672	.	+	0	Parent=Os03t0756000-01
Chr03	irgsp1_rep	CDS	31203771	31203887	.	+	1	Parent=Os03t0756000-01
Chr03	irgsp1_rep	CDS	31203980	31204067	.	+	1	Parent=Os03t0756000-01
Chr03	irgsp1_rep	CDS	31204904	31205047	.	+	0	Parent=Os03t0756000-01
Chr03	irgsp1_rep	three_prime_UTR	31205048	31205287	.	+	.	Parent=Os03t0756000-01
Chr03	irgsp1_rep	mRNA	31207084	31212413	.	-	.	ID=Os03t0756200-01;Name=Os03t0756200-01;Locus_id=Os03g0756200;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK111668 (DDBJ%2C Best hit);ORF_evidence=A3AMU1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013153P21;Expression=AK111668;TENOR=Os03t0756200-01;KEGG=Os03t0756200-01
Chr03	irgsp1_rep	five_prime_UTR	31212256	31212413	.	-	.	Parent=Os03t0756200-01
Chr03	irgsp1_rep	CDS	31209106	31212255	.	-	0	Parent=Os03t0756200-01
Chr03	irgsp1_rep	three_prime_UTR	31209062	31209105	.	-	.	Parent=Os03t0756200-01
Chr03	irgsp1_rep	three_prime_UTR	31208447	31208507	.	-	.	Parent=Os03t0756200-01
Chr03	irgsp1_rep	three_prime_UTR	31208017	31208264	.	-	.	Parent=Os03t0756200-01
Chr03	irgsp1_rep	three_prime_UTR	31207084	31207919	.	-	.	Parent=Os03t0756200-01
Chr03	irgsp1_rep	mRNA	31216563	31218820	.	-	.	ID=Os03t0756300-01;Name=Os03t0756300-01;Locus_id=Os03g0756300;Note=X8 domain containing protein.;Transcript_evidence=AK103836 (DDBJ%2C Best hit);ORF_evidence=NP_001152290.1 (RefSeq);InterPro=X8 (IPR012946);NIAS_FLcDNA=J033148G11;Expression=AK103836;TENOR=Os03t0756300-01;KEGG=Os03t0756300-01
Chr03	irgsp1_rep	five_prime_UTR	31218738	31218820	.	-	.	Parent=Os03t0756300-01
Chr03	irgsp1_rep	CDS	31218671	31218737	.	-	0	Parent=Os03t0756300-01
Chr03	irgsp1_rep	CDS	31218342	31218581	.	-	2	Parent=Os03t0756300-01
Chr03	irgsp1_rep	CDS	31218155	31218188	.	-	2	Parent=Os03t0756300-01
Chr03	irgsp1_rep	CDS	31216771	31216957	.	-	1	Parent=Os03t0756300-01
Chr03	irgsp1_rep	three_prime_UTR	31216563	31216770	.	-	.	Parent=Os03t0756300-01
Chr03	irgsp1_rep	mRNA	31220698	31223726	.	-	.	ID=Os03t0756400-01;Name=Os03t0756400-01;Locus_id=Os03g0756400;Note=Protein of unknown function%2C transmembrane-40 domain containing protein.;Transcript_evidence=AK099399 (DDBJ%2C Best hit);ORF_evidence=A2XM49 (UniProt);InterPro=Uncharacterised protein family%2C transmembrane-40 (IPR018781);NIAS_FLcDNA=J013000O17;Expression=AK099399;TENOR=Os03t0756400-01;KEGG=Os03t0756400-01
Chr03	irgsp1_rep	five_prime_UTR	31223594	31223726	.	-	.	Parent=Os03t0756400-01
Chr03	irgsp1_rep	CDS	31223279	31223593	.	-	0	Parent=Os03t0756400-01
Chr03	irgsp1_rep	CDS	31222415	31222606	.	-	0	Parent=Os03t0756400-01
Chr03	irgsp1_rep	CDS	31221555	31221714	.	-	0	Parent=Os03t0756400-01
Chr03	irgsp1_rep	CDS	31221362	31221464	.	-	2	Parent=Os03t0756400-01
Chr03	irgsp1_rep	CDS	31221194	31221275	.	-	1	Parent=Os03t0756400-01
Chr03	irgsp1_rep	CDS	31220979	31221056	.	-	0	Parent=Os03t0756400-01
Chr03	irgsp1_rep	three_prime_UTR	31220698	31220978	.	-	.	Parent=Os03t0756400-01
Chr03	irgsp1_rep	mRNA	31226163	31230517	.	-	.	ID=Os03t0756500-00;Name=Os03t0756500-00;Locus_id=Os03g0756500;Note=Similar to PAF1 complex component.;Transcript_evidence=AK373369 (DDBJ);ORF_evidence=XP_002318586.1 (RefSeq);InterPro=Leo1-like protein (IPR007149);TENOR=Os03t0756500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	31230398	31230517	.	-	0	Parent=Os03t0756500-00
Chr03	irgsp1_rep	CDS	31229503	31229679	.	-	0	Parent=Os03t0756500-00
Chr03	irgsp1_rep	CDS	31228746	31228919	.	-	0	Parent=Os03t0756500-00
Chr03	irgsp1_rep	CDS	31228271	31228416	.	-	0	Parent=Os03t0756500-00
Chr03	irgsp1_rep	CDS	31228023	31228188	.	-	1	Parent=Os03t0756500-00
Chr03	irgsp1_rep	CDS	31227308	31227439	.	-	0	Parent=Os03t0756500-00
Chr03	irgsp1_rep	CDS	31226457	31226570	.	-	0	Parent=Os03t0756500-00
Chr03	irgsp1_rep	CDS	31226163	31226384	.	-	0	Parent=Os03t0756500-00
Chr03	irgsp1_rep	mRNA	31250552	31255800	.	-	.	ID=Os03t0756700-01;Name=Os03t0756700-01;Locus_id=Os03g0756700;Note=Hypothetical conserved gene.;Transcript_evidence=AK318528 (DDBJ%2C Best hit);ORF_evidence=B9FBW4 (UniProt);NIAS_FLcDNA=J065143N22;TENOR=Os03t0756700-01;KEGG=Os03t0756700-01
Chr03	irgsp1_rep	five_prime_UTR	31255632	31255800	.	-	.	Parent=Os03t0756700-01
Chr03	irgsp1_rep	five_prime_UTR	31254528	31254576	.	-	.	Parent=Os03t0756700-01
Chr03	irgsp1_rep	CDS	31253458	31254527	.	-	0	Parent=Os03t0756700-01
Chr03	irgsp1_rep	CDS	31252318	31253289	.	-	1	Parent=Os03t0756700-01
Chr03	irgsp1_rep	CDS	31252143	31252191	.	-	1	Parent=Os03t0756700-01
Chr03	irgsp1_rep	CDS	31251807	31252054	.	-	0	Parent=Os03t0756700-01
Chr03	irgsp1_rep	CDS	31251208	31251315	.	-	1	Parent=Os03t0756700-01
Chr03	irgsp1_rep	CDS	31250780	31251008	.	-	1	Parent=Os03t0756700-01
Chr03	irgsp1_rep	three_prime_UTR	31250552	31250779	.	-	.	Parent=Os03t0756700-01
Chr03	irgsp1_rep	mRNA	31255952	31259119	.	+	.	ID=Os03t0756800-01;Name=Os03t0756800-01;Locus_id=Os03g0756800;Note=Uncharacterised protein family UPF0139 domain containing protein.;Transcript_evidence=AK120423 (DDBJ%2C Best hit);ORF_evidence=NP_001152924.1 (RefSeq);InterPro=Uncharacterised protein family UPF0139 (IPR005351);NIAS_FLcDNA=J013095D02;Expression=AK120423;TENOR=Os03t0756800-01;KEGG=Os03t0756800-01
Chr03	irgsp1_rep	five_prime_UTR	31255952	31256017	.	+	.	Parent=Os03t0756800-01
Chr03	irgsp1_rep	CDS	31256018	31256194	.	+	0	Parent=Os03t0756800-01
Chr03	irgsp1_rep	CDS	31256465	31256565	.	+	0	Parent=Os03t0756800-01
Chr03	irgsp1_rep	CDS	31258870	31258933	.	+	1	Parent=Os03t0756800-01
Chr03	irgsp1_rep	three_prime_UTR	31258934	31259119	.	+	.	Parent=Os03t0756800-01
Chr03	irgsp1_rep	mRNA	31281967	31284608	.	+	.	ID=Os03t0757000-01;Name=Os03t0757000-01;Locus_id=Os03g0757000;Oryzabase Gene Name Synonym(s)=UDP-glycosyltransferase 83A1;Note=UDP-glucuronosyl/UDP-glucosyltransferase domain containing protein.;Transcript_evidence=AK241664 (DDBJ%2C Best hit);ORF_evidence=B9F5S5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J065191P15;Oryzabase=23281;TENOR=Os03t0757000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	31281967	31282046	.	+	.	Parent=Os03t0757000-01
Chr03	irgsp1_rep	CDS	31282047	31282315	.	+	0	Parent=Os03t0757000-01
Chr03	irgsp1_rep	CDS	31282510	31282545	.	+	1	Parent=Os03t0757000-01
Chr03	irgsp1_rep	CDS	31283635	31284469	.	+	1	Parent=Os03t0757000-01
Chr03	irgsp1_rep	three_prime_UTR	31284470	31284608	.	+	.	Parent=Os03t0757000-01
Chr03	irgsp1_rep	mRNA	31292068	31293498	.	-	.	ID=Os03t0757100-00;Name=Os03t0757100-00;Locus_id=Os03g0757100;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK251751 (DDBJ);ORF_evidence=NP_001051321.2 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os03t0757100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	31293481	31293498	.	-	.	Parent=Os03t0757100-00
Chr03	irgsp1_rep	CDS	31292068	31293480	.	-	0	Parent=Os03t0757100-00
Chr03	irgsp1_rep	mRNA	31294568	31297066	.	-	.	ID=Os03t0757200-01;Name=Os03t0757200-01;Locus_id=Os03g0757200;Oryzabase Gene Name Synonym(s)=UDP-glucosyltransferase family protein;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK071136 (DDBJ%2C Best hit);ORF_evidence=Q9AUU9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J023078E19;Oryzabase=23287;Expression=AK071136;TENOR=Os03t0757200-01;KEGG=Os03t0757200-01
Chr03	irgsp1_rep	five_prime_UTR	31297032	31297066	.	-	.	Parent=Os03t0757200-01
Chr03	irgsp1_rep	CDS	31296539	31297031	.	-	0	Parent=Os03t0757200-01
Chr03	irgsp1_rep	CDS	31294729	31295618	.	-	2	Parent=Os03t0757200-01
Chr03	irgsp1_rep	three_prime_UTR	31294568	31294728	.	-	.	Parent=Os03t0757200-01
Chr03	irgsp1_rep	mRNA	31298949	31300800	.	-	.	ID=Os03t0757400-01;Name=Os03t0757400-01;Locus_id=Os03g0757400;Note=Hypothetical protein.;Transcript_evidence=AK105674 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-201-A10;Expression=AK105674;TENOR=Os03t0757400-01;KEGG=Os03t0757400-01
Chr03	irgsp1_rep	five_prime_UTR	31300692	31300800	.	-	.	Parent=Os03t0757400-01
Chr03	irgsp1_rep	CDS	31300245	31300691	.	-	0	Parent=Os03t0757400-01
Chr03	irgsp1_rep	three_prime_UTR	31298949	31300244	.	-	.	Parent=Os03t0757400-01
Chr03	irgsp1_rep	mRNA	31299182	31301001	.	+	.	ID=Os03t0757500-01;Name=Os03t0757500-01;Locus_id=Os03g0757500;RAP-DB Gene Symbol Synonym(s)=GSA1;RAP-DB Gene Name Synonym(s)=Grain Size and Abiotic stress tolerance 1;CGSNL Gene Symbol=GSA1;CGSNL Gene Name=GRAIN SIZE AND ABIOTIC STRESS TOLERANCE 1;Oryzabase Gene Symbol Synonym(s)=OsGSA1%2C UGT83A1%2C OsUGT83A1;Oryzabase Gene Name Synonym(s)=Grain Size and Abiotic stress tolerance 1%2C UDP-glucosyltransferase 83A1;Note=UDP-glucosyltransferase%2C Regulation of grain size and abiotic stress tolerance;Transcript_evidence=AK069049;ORF_evidence=Q9AUV3;GO=Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J023003I23;Manual Curation=May 28%2C 2020;Literature_PMID=32457405;Oryzabase=23702;Expression=AK069049;TENOR=Os03t0757500-01;KEGG=Os03t0757500-01
Chr03	irgsp1_rep	five_prime_UTR	31299182	31299217	.	+	.	Parent=Os03t0757500-01
Chr03	irgsp1_rep	CDS	31299218	31299704	.	+	0	Parent=Os03t0757500-01
Chr03	irgsp1_rep	CDS	31299847	31300733	.	+	2	Parent=Os03t0757500-01
Chr03	irgsp1_rep	three_prime_UTR	31300734	31301001	.	+	.	Parent=Os03t0757500-01
Chr03	irgsp1_rep	mRNA	31301318	31303076	.	-	.	ID=Os03t0757550-01;Name=Os03t0757550-01;Locus_id=Os03g0757550;Note=Non-protein coding transcript.;Transcript_evidence=AK287496 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J043033D08;TENOR=Os03t0757550-01
Chr03	irgsp1_rep	exon	31302603	31303076	.	-	.	Parent=Os03t0757550-01
Chr03	irgsp1_rep	exon	31301960	31301998	.	-	.	Parent=Os03t0757550-01
Chr03	irgsp1_rep	exon	31301318	31301594	.	-	.	Parent=Os03t0757550-01
Chr03	irgsp1_rep	mRNA	31302708	31304305	.	+	.	ID=Os03t0757600-01;Name=Os03t0757600-01;Locus_id=Os03g0757600;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK102229 (DDBJ%2C Best hit);ORF_evidence=A2XM58 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J033087P16;Expression=AK102229;TENOR=Os03t0757600-01;KEGG=Os03t0757600-01
Chr03	irgsp1_rep	five_prime_UTR	31302708	31302749	.	+	.	Parent=Os03t0757600-01
Chr03	irgsp1_rep	CDS	31302750	31303221	.	+	0	Parent=Os03t0757600-01
Chr03	irgsp1_rep	CDS	31303320	31304194	.	+	2	Parent=Os03t0757600-01
Chr03	irgsp1_rep	three_prime_UTR	31304195	31304305	.	+	.	Parent=Os03t0757600-01
Chr03	irgsp1_rep	mRNA	31303306	31305227	.	+	.	ID=Os03t0757600-02;Name=Os03t0757600-02;Locus_id=Os03g0757600;Note=Similar to Indole-3-acetate beta-glucosyltransferase.;Transcript_evidence=AK110280 (DDBJ%2C Best hit);ORF_evidence=B6UCG2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=002-163-E03;Expression=AK110280;TENOR=Os03t0757600-02;KEGG=Os03t0757600-02
Chr03	irgsp1_rep	five_prime_UTR	31303306	31303339	.	+	.	Parent=Os03t0757600-02
Chr03	irgsp1_rep	CDS	31303340	31304194	.	+	0	Parent=Os03t0757600-02
Chr03	irgsp1_rep	three_prime_UTR	31304195	31305227	.	+	.	Parent=Os03t0757600-02
Chr03	irgsp1_rep	mRNA	31305705	31306115	.	+	.	ID=Os03t0757750-00;Name=Os03t0757750-00;Locus_id=Os03g0757750;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q84SC9 (UniProt);TENOR=Os03t0757750-00
Chr03	irgsp1_rep	CDS	31305705	31306115	.	+	0	Parent=Os03t0757750-00
Chr03	irgsp1_rep	mRNA	31315908	31318366	.	+	.	ID=Os03t0757900-01;Name=Os03t0757900-01;Locus_id=Os03g0757900;Note=Similar to UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase) (UDP-GlcDH) (UDPGDH).;Transcript_evidence=AK098880 (DDBJ%2C Best hit);ORF_evidence=B6TBY8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: NAD binding (GO:0051287);InterPro=UDP-glucose/GDP-mannose dehydrogenase%2C N-terminal (IPR001732),6-phosphogluconate dehydrogenase%2C C-terminal-like (IPR008927),UDP-glucose/GDP-mannose dehydrogenase%2C dimerisation (IPR014026),UDP-glucose/GDP-mannose dehydrogenase%2C C-terminal (IPR014027),NAD(P)-binding domain (IPR016040),Nucleotide sugar dehydrogenase (IPR017476),CytoChrome c1%2C transmembrane anchor%2C C-terminal (IPR021157);NIAS_FLcDNA=J013001F12;Expression=AK098880;TENOR=Os03t0757900-01;KEGG=Os03t0757900-01 (EC:1.1.1.22)
Chr03	irgsp1_rep	five_prime_UTR	31315908	31316000	.	+	.	Parent=Os03t0757900-01
Chr03	irgsp1_rep	five_prime_UTR	31316518	31316535	.	+	.	Parent=Os03t0757900-01
Chr03	irgsp1_rep	CDS	31316536	31317978	.	+	0	Parent=Os03t0757900-01
Chr03	irgsp1_rep	three_prime_UTR	31317979	31318366	.	+	.	Parent=Os03t0757900-01
Chr03	irgsp1_rep	mRNA	31316533	31317979	.	-	.	ID=Os03t0757950-00;Name=Os03t0757950-00;Locus_id=Os03g0757950;Note=Hypothetical protein.;Transcript_evidence=BT054437 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0757950-00
Chr03	irgsp1_rep	five_prime_UTR	31317778	31317979	.	-	.	Parent=Os03t0757950-00
Chr03	irgsp1_rep	CDS	31316533	31317777	.	-	0	Parent=Os03t0757950-00
Chr03	irgsp1_rep	mRNA	31323426	31325253	.	-	.	ID=Os03t0758000-01;Name=Os03t0758000-01;Locus_id=Os03g0758000;CGSNL Gene Symbol=WRKY3;CGSNL Gene Name=WRKY GENE3;Oryzabase Gene Symbol Synonym(s)=OsWRKY3;Oryzabase Gene Name Synonym(s)=Rice WRKY gene3;Note=Similar to WRKY23 transcription factor (Fragment).;Transcript_evidence=ab initio prediction;ORF_evidence=B3GAW5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6542;TENOR=Os03t0758000-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	31325039	31325253	.	-	0	Parent=Os03t0758000-01
Chr03	irgsp1_rep	CDS	31323426	31323906	.	-	1	Parent=Os03t0758000-01
Chr03	irgsp1_rep	mRNA	31325921	31326935	.	-	.	ID=Os03t0758050-01;Name=Os03t0758050-01;Locus_id=Os03g0758050;Note=Hypothetical conserved gene.;Transcript_evidence=AK288655 (DDBJ%2C Best hit);ORF_evidence=NP_001051329.1 (RefSeq);NIAS_FLcDNA=J090057D22;TENOR=Os03t0758050-01;KEGG=Os03t0758050-01
Chr03	irgsp1_rep	five_prime_UTR	31326832	31326935	.	-	.	Parent=Os03t0758050-01
Chr03	irgsp1_rep	CDS	31326529	31326831	.	-	0	Parent=Os03t0758050-01
Chr03	irgsp1_rep	three_prime_UTR	31325921	31326528	.	-	.	Parent=Os03t0758050-01
Chr03	irgsp1_rep	mRNA	31332033	31339163	.	-	.	ID=Os03t0758100-01;Name=Os03t0758100-01;Locus_id=Os03g0758100;RAP-DB Gene Symbol Synonym(s)=OsPho1;RAP-DB Gene Name Synonym(s)=Starch phosphorylase 1;Oryzabase Gene Symbol Synonym(s)=Pho1%2C OsPho1%2C OsPHOL%2C PHOL;Oryzabase Gene Name Synonym(s)=Starch phosphorylase 1%2C plastidial starch phosphorylase1%2C plastidial starch phosphorylase 1%2C Plastidic a-1%2C 4-glucan phosphorylase 2%2C starch phosphorylase L;Note=Starch phosphorylase%2C Alpha-glucan phosphorylase%2C Starch biosynthesis in rice endosperm at low temperature;Transcript_evidence=AK063766 (truncated),AB441692 (Taichung 65);ORF_evidence=B3IYE3;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: phosphorylase activity (GO:0004645),Molecular Function: glycogen phosphorylase activity (GO:0008184),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Glycosyl transferase%2C family 35 (IPR000811),Glycogen/starch/alpha-glucan phosphorylase (IPR011833),Phosphorylase pyridoxal-phosphate attachment site (IPR035090);NIAS_FLcDNA=001-121-B07 (truncated);Manual Curation=March 23%2C 2020;Literature_PMID=26748915,18621947;Oryzabase=11812;TENOR=Os03t0758100-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	31338962	31339163	.	-	0	Parent=Os03t0758100-01
Chr03	irgsp1_rep	CDS	31337626	31337858	.	-	2	Parent=Os03t0758100-01
Chr03	irgsp1_rep	CDS	31337439	31337540	.	-	0	Parent=Os03t0758100-01
Chr03	irgsp1_rep	CDS	31336923	31337099	.	-	0	Parent=Os03t0758100-01
Chr03	irgsp1_rep	CDS	31336539	31336814	.	-	0	Parent=Os03t0758100-01
Chr03	irgsp1_rep	CDS	31335784	31336055	.	-	0	Parent=Os03t0758100-01
Chr03	irgsp1_rep	CDS	31335521	31335638	.	-	1	Parent=Os03t0758100-01
Chr03	irgsp1_rep	CDS	31334988	31335443	.	-	0	Parent=Os03t0758100-01
Chr03	irgsp1_rep	CDS	31334726	31334878	.	-	0	Parent=Os03t0758100-01
Chr03	irgsp1_rep	CDS	31334446	31334574	.	-	0	Parent=Os03t0758100-01
Chr03	irgsp1_rep	CDS	31334137	31334373	.	-	0	Parent=Os03t0758100-01
Chr03	irgsp1_rep	CDS	31333738	31333814	.	-	0	Parent=Os03t0758100-01
Chr03	irgsp1_rep	CDS	31333431	31333617	.	-	1	Parent=Os03t0758100-01
Chr03	irgsp1_rep	CDS	31333099	31333299	.	-	0	Parent=Os03t0758100-01
Chr03	irgsp1_rep	CDS	31332396	31332512	.	-	0	Parent=Os03t0758100-01
Chr03	irgsp1_rep	three_prime_UTR	31332033	31332395	.	-	.	Parent=Os03t0758100-01
Chr03	irgsp1_rep	mRNA	31344685	31345751	.	-	.	ID=Os03t0758250-00;Name=Os03t0758250-00;Locus_id=Os03g0758250;Note=Hypothetical gene.;Transcript_evidence=EU950447 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0758250-00;KEGG=Os03t0758250-00
Chr03	irgsp1_rep	five_prime_UTR	31345750	31345751	.	-	.	Parent=Os03t0758250-00
Chr03	irgsp1_rep	CDS	31345315	31345749	.	-	0	Parent=Os03t0758250-00
Chr03	irgsp1_rep	three_prime_UTR	31344685	31345314	.	-	.	Parent=Os03t0758250-00
Chr03	irgsp1_rep	mRNA	31344785	31350799	.	+	.	ID=Os03t0758300-01;Name=Os03t0758300-01;Locus_id=Os03g0758300;CGSNL Gene Symbol=CNGC7;CGSNL Gene Name=CYCLIC NUCLEOTIDE GATED CHANNEL 7;Oryzabase Gene Symbol Synonym(s)=OsCNGC7%2C OsCNGC14;Oryzabase Gene Name Synonym(s)=Cyclic nucleotide gated channel 7%2C Cyclic nucleotide-gated ion channel 14;Note=Similar to Cyclic nucleotide-gated ion channel 2 (AtCNGC2) (Cyclic nucleotide-and calmodulin-regulated ion channel 2) (DEFENSE NO DEATH 1).;Transcript_evidence=AK067626 (DDBJ%2C Best hit);ORF_evidence=Q4VDM4 (UniProt);InterPro=Cyclic nucleotide-binding domain (IPR000595),RmlC-like jelly roll fold (IPR014710),Cyclic nucleotide-binding-like (IPR018490);NIAS_FLcDNA=J013112I06;Oryzabase=15480;Expression=AK067626;TENOR=Os03t0758300-01;KEGG=Os03t0758300-01
Chr03	irgsp1_rep	five_prime_UTR	31344785	31344971	.	+	.	Parent=Os03t0758300-01
Chr03	irgsp1_rep	five_prime_UTR	31345080	31345129	.	+	.	Parent=Os03t0758300-01
Chr03	irgsp1_rep	CDS	31345130	31345162	.	+	0	Parent=Os03t0758300-01
Chr03	irgsp1_rep	CDS	31345399	31345749	.	+	0	Parent=Os03t0758300-01
Chr03	irgsp1_rep	CDS	31348170	31348385	.	+	0	Parent=Os03t0758300-01
Chr03	irgsp1_rep	CDS	31348992	31349308	.	+	0	Parent=Os03t0758300-01
Chr03	irgsp1_rep	CDS	31349457	31349568	.	+	1	Parent=Os03t0758300-01
Chr03	irgsp1_rep	CDS	31349655	31349891	.	+	0	Parent=Os03t0758300-01
Chr03	irgsp1_rep	CDS	31349981	31350571	.	+	0	Parent=Os03t0758300-01
Chr03	irgsp1_rep	three_prime_UTR	31350572	31350799	.	+	.	Parent=Os03t0758300-01
Chr03	irgsp1_rep	mRNA	31348293	31350801	.	+	.	ID=Os03t0758300-02;Name=Os03t0758300-02;Locus_id=Os03g0758300;CGSNL Gene Symbol=CNGC7;CGSNL Gene Name=CYCLIC NUCLEOTIDE GATED CHANNEL 7;Oryzabase Gene Symbol Synonym(s)=OsCNGC7%2C OsCNGC14;Oryzabase Gene Name Synonym(s)=Cyclic nucleotide gated channel 7%2C Cyclic nucleotide-gated ion channel 14;Note=Similar to Cyclic nucleotide-gated ion channel 2 (Fragment).;Transcript_evidence=AK060339 (DDBJ%2C Best hit);ORF_evidence=Q4VDM4 (UniProt);InterPro=Cyclic nucleotide-binding domain (IPR000595),RmlC-like jelly roll fold (IPR014710),Cyclic nucleotide-binding-like (IPR018490);NIAS_FLcDNA=001-008-C12;Oryzabase=15480;Expression=AK060339;TENOR=Os03t0758300-02;KEGG=Os03t0758300-02
Chr03	irgsp1_rep	CDS	31348293	31348385	.	+	0	Parent=Os03t0758300-02
Chr03	irgsp1_rep	CDS	31348992	31349308	.	+	0	Parent=Os03t0758300-02
Chr03	irgsp1_rep	CDS	31349457	31349568	.	+	1	Parent=Os03t0758300-02
Chr03	irgsp1_rep	CDS	31349655	31349891	.	+	0	Parent=Os03t0758300-02
Chr03	irgsp1_rep	CDS	31349981	31350571	.	+	0	Parent=Os03t0758300-02
Chr03	irgsp1_rep	three_prime_UTR	31350572	31350801	.	+	.	Parent=Os03t0758300-02
Chr03	irgsp1_rep	mRNA	31344934	31350836	.	+	.	ID=Os03t0758300-03;Name=Os03t0758300-03;Locus_id=Os03g0758300;RAP-DB Gene Symbol Synonym(s)=OsCNGC14;RAP-DB Gene Name Synonym(s)=cyclic nucleotide-gated ion channel 14;CGSNL Gene Symbol=CNGC7;CGSNL Gene Name=CYCLIC NUCLEOTIDE GATED CHANNEL 7;Oryzabase Gene Symbol Synonym(s)=OsCNGC7%2C OsCNGC14;Oryzabase Gene Name Synonym(s)=Cyclic nucleotide gated channel 7%2C Cyclic nucleotide-gated ion channel 14;Note=Cyclic nucleotide-gated ion channel (CNGC) protein%2C Heat and chilling tolerance%2C Modulation of calcium signals in response to temperature stress;Transcript_evidence=Inferred from literature;ORF_evidence=B9F5T0;GO=Biological Process: ion transport (GO:0006811),Biological Process: transmembrane transport (GO:0055085),Molecular Function: ion channel activity (GO:0005216),Cellular Component: membrane (GO:0016020);InterPro=Cyclic nucleotide-binding-like (IPR018490),RmlC-like jelly roll fold (IPR014710),Ion transport domain (IPR005821),Cyclic nucleotide-binding domain (IPR000595);Manual Curation=June 15%2C 2020;Literature_PMID=32527735;Oryzabase=15480;Subcellular location=plasma membrane (GO:0005886)
Chr03	irgsp1_rep	CDS	31344934	31344971	.	+	0	Parent=Os03t0758300-03
Chr03	irgsp1_rep	CDS	31345080	31345749	.	+	1	Parent=Os03t0758300-03
Chr03	irgsp1_rep	CDS	31348170	31348385	.	+	0	Parent=Os03t0758300-03
Chr03	irgsp1_rep	CDS	31348992	31349308	.	+	0	Parent=Os03t0758300-03
Chr03	irgsp1_rep	CDS	31349457	31349568	.	+	1	Parent=Os03t0758300-03
Chr03	irgsp1_rep	CDS	31349655	31349891	.	+	0	Parent=Os03t0758300-03
Chr03	irgsp1_rep	CDS	31349981	31350571	.	+	0	Parent=Os03t0758300-03
Chr03	irgsp1_rep	three_prime_UTR	31350572	31350836	.	+	.	Parent=Os03t0758300-03
Chr03	irgsp1_rep	mRNA	31349969	31350572	.	-	.	ID=Os03t0758350-00;Name=Os03t0758350-00;Locus_id=Os03g0758350;Note=Hypothetical gene.;Transcript_evidence=BT069131 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0758350-00;KEGG=Os03t0758350-00
Chr03	irgsp1_rep	five_prime_UTR	31350524	31350572	.	-	.	Parent=Os03t0758350-00
Chr03	irgsp1_rep	CDS	31349969	31350523	.	-	0	Parent=Os03t0758350-00
Chr03	irgsp1_rep	mRNA	31354606	31357421	.	+	.	ID=Os03t0758400-01;Name=Os03t0758400-01;Locus_id=Os03g0758400;Note=Ankyrin repeat containing protein.;Transcript_evidence=AK111573 (DDBJ%2C Best hit);ORF_evidence=NP_001150416.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J013073E13;Expression=AK111573;TENOR=Os03t0758400-01;KEGG=Os03t0758400-01
Chr03	irgsp1_rep	five_prime_UTR	31354606	31354715	.	+	.	Parent=Os03t0758400-01
Chr03	irgsp1_rep	CDS	31354716	31354926	.	+	0	Parent=Os03t0758400-01
Chr03	irgsp1_rep	CDS	31355028	31355168	.	+	2	Parent=Os03t0758400-01
Chr03	irgsp1_rep	CDS	31356008	31356132	.	+	2	Parent=Os03t0758400-01
Chr03	irgsp1_rep	CDS	31356633	31356779	.	+	0	Parent=Os03t0758400-01
Chr03	irgsp1_rep	CDS	31357149	31357283	.	+	0	Parent=Os03t0758400-01
Chr03	irgsp1_rep	three_prime_UTR	31357284	31357421	.	+	.	Parent=Os03t0758400-01
Chr03	irgsp1_rep	mRNA	31354630	31357464	.	+	.	ID=Os03t0758400-02;Name=Os03t0758400-02;Locus_id=Os03g0758400;Note=Ankyrin repeat domain containing protein.;Transcript_evidence=AK062704 (DDBJ%2C Best hit);ORF_evidence=Q9AUW0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=001-106-B05;TENOR=Os03t0758400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	31354630	31354710	.	+	.	Parent=Os03t0758400-02
Chr03	irgsp1_rep	CDS	31354711	31354744	.	+	0	Parent=Os03t0758400-02
Chr03	irgsp1_rep	CDS	31355106	31355168	.	+	2	Parent=Os03t0758400-02
Chr03	irgsp1_rep	CDS	31356008	31356132	.	+	2	Parent=Os03t0758400-02
Chr03	irgsp1_rep	CDS	31356670	31356696	.	+	0	Parent=Os03t0758400-02
Chr03	irgsp1_rep	three_prime_UTR	31356697	31356779	.	+	.	Parent=Os03t0758400-02
Chr03	irgsp1_rep	three_prime_UTR	31357149	31357464	.	+	.	Parent=Os03t0758400-02
Chr03	irgsp1_rep	mRNA	31359578	31360468	.	-	.	ID=Os03t0758500-01;Name=Os03t0758500-01;Locus_id=Os03g0758500;CGSNL Gene Symbol=ENODL12;CGSNL Gene Name=EARLY NODULIN LIKE PROTEIN 12;Oryzabase Gene Symbol Synonym(s)=OsENODL12;Oryzabase Gene Name Synonym(s)=early nodulin-like protein 12;Note=Cupredoxin domain containing protein.;Transcript_evidence=AK102002 (DDBJ%2C Best hit);ORF_evidence=NP_001150509.1 (RefSeq);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);NIAS_FLcDNA=J033079N03;Oryzabase=9737;Expression=AK102002;TENOR=Os03t0758500-01;KEGG=Os03t0758500-01
Chr03	irgsp1_rep	five_prime_UTR	31360334	31360468	.	-	.	Parent=Os03t0758500-01
Chr03	irgsp1_rep	CDS	31360165	31360333	.	-	0	Parent=Os03t0758500-01
Chr03	irgsp1_rep	CDS	31359701	31360029	.	-	2	Parent=Os03t0758500-01
Chr03	irgsp1_rep	three_prime_UTR	31359578	31359700	.	-	.	Parent=Os03t0758500-01
Chr03	irgsp1_rep	mRNA	31359440	31360467	.	-	.	ID=Os03t0758500-02;Name=Os03t0758500-02;Locus_id=Os03g0758500;CGSNL Gene Symbol=ENODL12;CGSNL Gene Name=EARLY NODULIN LIKE PROTEIN 12;Oryzabase Gene Symbol Synonym(s)=OsENODL12;Oryzabase Gene Name Synonym(s)=early nodulin-like protein 12;Note=Similar to blue copper protein.;Transcript_evidence=AK059403 (DDBJ%2C Best hit);ORF_evidence=NP_001150509.1 (RefSeq);NIAS_FLcDNA=001-027-B07;Oryzabase=9737;Expression=AK059403;TENOR=Os03t0758500-02;KEGG=Os03t0758500-02
Chr03	irgsp1_rep	five_prime_UTR	31360334	31360467	.	-	.	Parent=Os03t0758500-02
Chr03	irgsp1_rep	CDS	31360094	31360333	.	-	0	Parent=Os03t0758500-02
Chr03	irgsp1_rep	three_prime_UTR	31359440	31360093	.	-	.	Parent=Os03t0758500-02
Chr03	irgsp1_rep	mRNA	31374949	31375374	.	+	.	ID=Os03t0758551-00;Name=Os03t0758551-00;Locus_id=Os03g0758551;Note=Hypothetical conserved gene.;Transcript_evidence=CT835284 (DDBJ%2C Best hit);ORF_evidence=Q9AUW2 (UniProt);TENOR=Os03t0758551-00;KEGG=Os03t0758551-00
Chr03	irgsp1_rep	five_prime_UTR	31374949	31375108	.	+	.	Parent=Os03t0758551-00
Chr03	irgsp1_rep	five_prime_UTR	31375115	31375219	.	+	.	Parent=Os03t0758551-00
Chr03	irgsp1_rep	CDS	31375220	31375333	.	+	0	Parent=Os03t0758551-00
Chr03	irgsp1_rep	three_prime_UTR	31375334	31375374	.	+	.	Parent=Os03t0758551-00
Chr03	irgsp1_rep	mRNA	31378126	31381399	.	+	.	ID=Os03t0758600-01;Name=Os03t0758600-01;Locus_id=Os03g0758600;Note=Protein of unknown function DUF863%2C plant family protein.;Transcript_evidence=AK062223 (DDBJ%2C Best hit);ORF_evidence=Q9AUW2 (UniProt);InterPro=Protein of unknown function DUF863%2C plant (IPR008581);NIAS_FLcDNA=001-047-B11;Expression=AK062223;TENOR=Os03t0758600-01;KEGG=Os03t0758600-01
Chr03	irgsp1_rep	five_prime_UTR	31378126	31378216	.	+	.	Parent=Os03t0758600-01
Chr03	irgsp1_rep	CDS	31378217	31378225	.	+	0	Parent=Os03t0758600-01
Chr03	irgsp1_rep	CDS	31379223	31381199	.	+	0	Parent=Os03t0758600-01
Chr03	irgsp1_rep	three_prime_UTR	31381200	31381399	.	+	.	Parent=Os03t0758600-01
Chr03	irgsp1_rep	mRNA	31382291	31387189	.	+	.	ID=Os03t0758700-01;Name=Os03t0758700-01;Locus_id=Os03g0758700;Note=WD40 repeat domain containing protein.;Transcript_evidence=AK106620 (DDBJ%2C Best hit);ORF_evidence=Q10CJ9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943);NIAS_FLcDNA=002-113-A11;TENOR=Os03t0758700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	31382291	31382439	.	+	.	Parent=Os03t0758700-01
Chr03	irgsp1_rep	five_prime_UTR	31382693	31382823	.	+	.	Parent=Os03t0758700-01
Chr03	irgsp1_rep	five_prime_UTR	31383409	31383688	.	+	.	Parent=Os03t0758700-01
Chr03	irgsp1_rep	CDS	31383689	31384079	.	+	0	Parent=Os03t0758700-01
Chr03	irgsp1_rep	CDS	31384557	31384629	.	+	2	Parent=Os03t0758700-01
Chr03	irgsp1_rep	CDS	31385094	31385367	.	+	1	Parent=Os03t0758700-01
Chr03	irgsp1_rep	CDS	31385833	31385933	.	+	0	Parent=Os03t0758700-01
Chr03	irgsp1_rep	CDS	31386789	31386834	.	+	1	Parent=Os03t0758700-01
Chr03	irgsp1_rep	three_prime_UTR	31386835	31387189	.	+	.	Parent=Os03t0758700-01
Chr03	irgsp1_rep	mRNA	31388386	31390881	.	+	.	ID=Os03t0758800-01;Name=Os03t0758800-01;Locus_id=Os03g0758800;Oryzabase Gene Symbol Synonym(s)=eIF-5A-2;Oryzabase Gene Name Synonym(s)=initiation factor eIF-5A%2C Eukaryotic translation initiation factor 5A-2;Note=Similar to Eukaryotic translation initiation factor 5A-2 (eIF-5A-2) (eIF-4D).;Transcript_evidence=AK060387 (DDBJ%2C Best hit),AK121592 (DDBJ%2C Best hit);ORF_evidence=Q9LEE4 (UniProt);GO=Biological Process: translational frameshifting (GO:0006452),Biological Process: peptidyl-lysine modification to hypusine (GO:0008612),Biological Process: positive regulation of translational elongation (GO:0045901),Biological Process: positive regulation of translational termination (GO:0045905),Molecular Function: RNA binding (GO:0003723),Molecular Function: translation elongation factor activity (GO:0003746),Molecular Function: ribosome binding (GO:0043022);InterPro=Translation elongation factor IF5A (IPR001884),KOW (IPR005824),Translation protein SH3-like (IPR008991),Nucleic acid-binding%2C OB-fold (IPR012340),Translation protein SH3-like%2C subgroup (IPR014722),Nucleic acid-binding%2C OB-fold-like (IPR016027),Translation elongation factor%2C IF5A%2C hypusine site (IPR019769),Translation elongation factor%2C IF5A C-terminal (IPR020189);NIAS_FLcDNA=001-009-G06,J033038B14;Oryzabase=17637;TENOR=Os03t0758800-01
Chr03	irgsp1_rep	five_prime_UTR	31388386	31388447	.	+	.	Parent=Os03t0758800-01
Chr03	irgsp1_rep	five_prime_UTR	31388555	31388578	.	+	.	Parent=Os03t0758800-01
Chr03	irgsp1_rep	CDS	31388579	31388704	.	+	0	Parent=Os03t0758800-01
Chr03	irgsp1_rep	CDS	31389687	31389809	.	+	0	Parent=Os03t0758800-01
Chr03	irgsp1_rep	CDS	31389895	31389951	.	+	0	Parent=Os03t0758800-01
Chr03	irgsp1_rep	CDS	31390236	31390310	.	+	0	Parent=Os03t0758800-01
Chr03	irgsp1_rep	CDS	31390402	31390506	.	+	0	Parent=Os03t0758800-01
Chr03	irgsp1_rep	three_prime_UTR	31390507	31390881	.	+	.	Parent=Os03t0758800-01
Chr03	irgsp1_rep	mRNA	31391410	31394044	.	+	.	ID=Os03t0758900-01;Name=Os03t0758900-01;Locus_id=Os03g0758900;CGSNL Gene Symbol=WRKY4;CGSNL Gene Name=WRKY GENE 4;Oryzabase Gene Symbol Synonym(s)=OsWRKY4%2C WRKY122%2C OsWRKY122;Oryzabase Gene Name Synonym(s)=Rice WRKY gene4;Note=Similar to predicted protein.;Transcript_evidence=AK287907 (DDBJ%2C Best hit);ORF_evidence=Q9AUW4 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Calycin (IPR012674),Domain of unknown function DUF3598 (IPR022017);NIAS_FLcDNA=J065212K05;Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6553;TENOR=Os03t0758900-01;KEGG=Os03t0758900-01
Chr03	irgsp1_rep	five_prime_UTR	31391410	31391461	.	+	.	Parent=Os03t0758900-01
Chr03	irgsp1_rep	CDS	31391462	31391722	.	+	0	Parent=Os03t0758900-01
Chr03	irgsp1_rep	CDS	31391862	31391956	.	+	0	Parent=Os03t0758900-01
Chr03	irgsp1_rep	CDS	31392171	31392288	.	+	1	Parent=Os03t0758900-01
Chr03	irgsp1_rep	CDS	31392374	31392492	.	+	0	Parent=Os03t0758900-01
Chr03	irgsp1_rep	CDS	31392581	31392767	.	+	1	Parent=Os03t0758900-01
Chr03	irgsp1_rep	CDS	31392854	31393000	.	+	0	Parent=Os03t0758900-01
Chr03	irgsp1_rep	CDS	31393416	31393706	.	+	0	Parent=Os03t0758900-01
Chr03	irgsp1_rep	three_prime_UTR	31393707	31394044	.	+	.	Parent=Os03t0758900-01
Chr03	irgsp1_rep	mRNA	31395468	31398928	.	+	.	ID=Os03t0758950-01;Name=Os03t0758950-01;Locus_id=Os03g0758950;RAP-DB Gene Symbol Synonym(s)=OsWRKY4;Note=Transcriptional activator%2C Defense responses to rice sheath blight;Transcript_evidence=AY341848;ORF_evidence=Q9AUW5;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=WRKY domain (IPR003657);Manual Curation=September 10%2C 2015;Literature_PMID=26275661,Rice WRKY Working Group 2012. Rice 5:3.;TENOR=Os03t0758950-00
Chr03	irgsp1_rep	five_prime_UTR	31395468	31395513	.	+	.	Parent=Os03t0758950-01
Chr03	irgsp1_rep	CDS	31395514	31395789	.	+	0	Parent=Os03t0758950-01
Chr03	irgsp1_rep	CDS	31396200	31396858	.	+	0	Parent=Os03t0758950-01
Chr03	irgsp1_rep	CDS	31396996	31397139	.	+	1	Parent=Os03t0758950-01
Chr03	irgsp1_rep	CDS	31398493	31398733	.	+	1	Parent=Os03t0758950-01
Chr03	irgsp1_rep	three_prime_UTR	31398734	31398928	.	+	.	Parent=Os03t0758950-01
Chr03	irgsp1_rep	mRNA	31399277	31401571	.	-	.	ID=Os03t0759000-01;Name=Os03t0759000-01;Locus_id=Os03g0759000;Note=Similar to F16A14.19.;Transcript_evidence=AK240969 (DDBJ%2C Best hit);ORF_evidence=Q9LMG0 (UniProt);InterPro=Domain of unknown function DUF1336 (IPR009769);NIAS_FLcDNA=J065046P10;TENOR=Os03t0759000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	31401425	31401571	.	-	.	Parent=Os03t0759000-01
Chr03	irgsp1_rep	five_prime_UTR	31401062	31401315	.	-	.	Parent=Os03t0759000-01
Chr03	irgsp1_rep	CDS	31400956	31401061	.	-	0	Parent=Os03t0759000-01
Chr03	irgsp1_rep	CDS	31400669	31400804	.	-	2	Parent=Os03t0759000-01
Chr03	irgsp1_rep	CDS	31400423	31400585	.	-	1	Parent=Os03t0759000-01
Chr03	irgsp1_rep	CDS	31400204	31400329	.	-	0	Parent=Os03t0759000-01
Chr03	irgsp1_rep	CDS	31399923	31400117	.	-	0	Parent=Os03t0759000-01
Chr03	irgsp1_rep	CDS	31399673	31399795	.	-	0	Parent=Os03t0759000-01
Chr03	irgsp1_rep	CDS	31399475	31399588	.	-	0	Parent=Os03t0759000-01
Chr03	irgsp1_rep	three_prime_UTR	31399277	31399474	.	-	.	Parent=Os03t0759000-01
Chr03	irgsp1_rep	mRNA	31404815	31409740	.	+	.	ID=Os03t0759125-00;Name=Os03t0759125-00;Locus_id=Os03g0759125;Note=Similar to Pollen preferential protein.;Transcript_evidence=BT060503 (DDBJ);ORF_evidence=Q43713 (UniProt);TENOR=Os03t0759125-00
Chr03	irgsp1_rep	CDS	31404815	31405480	.	+	0	Parent=Os03t0759125-00
Chr03	irgsp1_rep	CDS	31409360	31409740	.	+	0	Parent=Os03t0759125-00
Chr03	irgsp1_rep	mRNA	31404816	31409671	.	-	.	ID=Os03t0759250-00;Name=Os03t0759250-00;Locus_id=Os03g0759250;Note=Conserved hypothetical protein.;Transcript_evidence=EU947173 (DDBJ);ORF_evidence=A2WN04 (UniProt);TENOR=Os03t0759250-00
Chr03	irgsp1_rep	five_prime_UTR	31409605	31409671	.	-	.	Parent=Os03t0759250-00
Chr03	irgsp1_rep	CDS	31409349	31409604	.	-	0	Parent=Os03t0759250-00
Chr03	irgsp1_rep	CDS	31404816	31405366	.	-	2	Parent=Os03t0759250-00
Chr03	irgsp1_rep	mRNA	31410212	31410711	.	-	.	ID=Os03t0759375-00;Name=Os03t0759375-00;Locus_id=Os03g0759375;Note=Conserved hypothetical protein.;Transcript_evidence=FP093005 (DDBJ);ORF_evidence=A2WMQ7 (UniProt);TENOR=Os03t0759375-00
Chr03	irgsp1_rep	five_prime_UTR	31410500	31410711	.	-	.	Parent=Os03t0759375-00
Chr03	irgsp1_rep	CDS	31410212	31410499	.	-	0	Parent=Os03t0759375-00
Chr03	irgsp1_rep	mRNA	31410884	31413316	.	+	.	ID=Os03t0759500-01;Name=Os03t0759500-01;Locus_id=Os03g0759500;CGSNL Gene Symbol=ORC5;CGSNL Gene Name=ORIGIN RECOGNITION COMPLEX 5;Oryzabase Gene Symbol Synonym(s)=OsORC5;Note=Origin recognition complex 5.;Transcript_evidence=AK063449 (DDBJ%2C Best hit);ORF_evidence=Q852R2 (UniProt);GO=Biological Process: DNA replication (GO:0006260),Cellular Component: origin recognition complex (GO:0000808),Cellular Component: nucleus (GO:0005634);InterPro=Origin recognition complex%2C subunit 5 (IPR020796);NIAS_FLcDNA=001-115-F10;Oryzabase=9125;Expression=AK063449;TENOR=Os03t0759500-01;KEGG=Os03t0759500-01
Chr03	irgsp1_rep	five_prime_UTR	31410884	31411031	.	+	.	Parent=Os03t0759500-01
Chr03	irgsp1_rep	CDS	31411032	31411816	.	+	0	Parent=Os03t0759500-01
Chr03	irgsp1_rep	CDS	31411961	31412386	.	+	1	Parent=Os03t0759500-01
Chr03	irgsp1_rep	CDS	31412473	31412785	.	+	1	Parent=Os03t0759500-01
Chr03	irgsp1_rep	CDS	31412909	31412959	.	+	0	Parent=Os03t0759500-01
Chr03	irgsp1_rep	three_prime_UTR	31412960	31413316	.	+	.	Parent=Os03t0759500-01
Chr03	irgsp1_rep	mRNA	31414514	31417192	.	-	.	ID=Os03t0759600-00;Name=Os03t0759600-00;Locus_id=Os03g0759600;Oryzabase Gene Symbol Synonym(s)=OsCrRLK1L1;Oryzabase Gene Name Synonym(s)=Catharanthus roseus receptor-like kinase1-like kinase 1;Note=Similar to protein kinase family protein.;Transcript_evidence=BT061049 (DDBJ);ORF_evidence=NP_195622.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Malectin-like carbohydrate-binding domain (IPR024788);Oryzabase=18671;TENOR=Os03t0759600-00
Chr03	irgsp1_rep	CDS	31414514	31417192	.	-	0	Parent=Os03t0759600-00
Chr03	irgsp1_rep	mRNA	31422049	31426612	.	+	.	ID=Os03t0759700-01;Name=Os03t0759700-01;Locus_id=Os03g0759700;Oryzabase Gene Symbol Synonym(s)=OsbHLH066;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 066;Note=Similar to ER33 protein (Fragment).;Transcript_evidence=AK072833 (DDBJ%2C Best hit);ORF_evidence=F1DKB8 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J023136C11;Oryzabase=15353;Expression=AK072833;TENOR=Os03t0759700-01;KEGG=Os03t0759700-01
Chr03	irgsp1_rep	five_prime_UTR	31422049	31422275	.	+	.	Parent=Os03t0759700-01
Chr03	irgsp1_rep	five_prime_UTR	31422383	31422391	.	+	.	Parent=Os03t0759700-01
Chr03	irgsp1_rep	CDS	31422392	31422790	.	+	0	Parent=Os03t0759700-01
Chr03	irgsp1_rep	CDS	31423015	31423092	.	+	0	Parent=Os03t0759700-01
Chr03	irgsp1_rep	CDS	31423280	31423345	.	+	0	Parent=Os03t0759700-01
Chr03	irgsp1_rep	CDS	31424955	31425020	.	+	0	Parent=Os03t0759700-01
Chr03	irgsp1_rep	CDS	31425214	31425264	.	+	0	Parent=Os03t0759700-01
Chr03	irgsp1_rep	CDS	31426034	31426327	.	+	0	Parent=Os03t0759700-01
Chr03	irgsp1_rep	three_prime_UTR	31426328	31426612	.	+	.	Parent=Os03t0759700-01
Chr03	irgsp1_rep	mRNA	31436337	31437955	.	+	.	ID=Os03t0760000-01;Name=Os03t0760000-01;Locus_id=Os03g0760000;CGSNL Gene Symbol=CYP81A5;CGSNL Gene Name=CYTOCHROME P450 81A5;Oryzabase Gene Symbol Synonym(s)=OsCYP81A5;Oryzabase Gene Name Synonym(s)=CytoChrome P450 81A5;Note=CytoChrome P450 family protein.;Transcript_evidence=AK107231 (DDBJ%2C Best hit);ORF_evidence=Q2LA61 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);NIAS_FLcDNA=002-125-E04;Oryzabase=21836;Expression=AK107231;TENOR=Os03t0760000-01;KEGG=Os03t0760000-01
Chr03	irgsp1_rep	five_prime_UTR	31436337	31436337	.	+	.	Parent=Os03t0760000-01
Chr03	irgsp1_rep	CDS	31436338	31437375	.	+	0	Parent=Os03t0760000-01
Chr03	irgsp1_rep	three_prime_UTR	31437376	31437955	.	+	.	Parent=Os03t0760000-01
Chr03	irgsp1_rep	mRNA	31440347	31441943	.	+	.	ID=Os03t0760100-00;Name=Os03t0760100-00;Locus_id=Os03g0760100;CGSNL Gene Symbol=CYP81A6;CGSNL Gene Name=CYTOCHROME P450 81A6;Oryzabase Gene Symbol Synonym(s)=OsCYP81A6;Oryzabase Gene Name Synonym(s)=CytoChrome P450 81A6;Note=Hypothetical conserved gene.;Transcript_evidence=CT837541 (DDBJ%2C Best hit);ORF_evidence=NP_001173647.1 (RefSeq);Oryzabase=21837;TENOR=Os03t0760100-00;KEGG=Os03t0760100-00
Chr03	irgsp1_rep	five_prime_UTR	31440347	31440741	.	+	.	Parent=Os03t0760100-00
Chr03	irgsp1_rep	CDS	31440742	31441383	.	+	0	Parent=Os03t0760100-00
Chr03	irgsp1_rep	three_prime_UTR	31441384	31441429	.	+	.	Parent=Os03t0760100-00
Chr03	irgsp1_rep	three_prime_UTR	31441519	31441943	.	+	.	Parent=Os03t0760100-00
Chr03	irgsp1_rep	mRNA	31443454	31446045	.	+	.	ID=Os03t0760200-01;Name=Os03t0760200-01;Locus_id=Os03g0760200;CGSNL Gene Symbol=BEL;CGSNL Gene Name=BENTAZON LETHAL;Oryzabase Gene Symbol Synonym(s)=bel%2C bel-a(8077S)%2C bel-b(%3Dbsl%2C Norin8m)%2C CYP81A6;Oryzabase Gene Name Synonym(s)=bentazon sensitive%2C BENTAZON SENSITIVITY%2C bentazon susceptible lethality%2C BENTAZON AND SULFONYLUREA RESISTANT PROTEIN%2C cytoChrome P450 81A6;Note=CytoChrome P450 family protein.;Transcript_evidence=AK066760 (DDBJ%2C Best hit),AK104825 (DDBJ%2C Best hit);ORF_evidence=Q2LA61 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J013075G04,001-041-F09;Oryzabase=2473;TENOR=Os03t0760200-01
Chr03	irgsp1_rep	five_prime_UTR	31443454	31443505	.	+	.	Parent=Os03t0760200-01
Chr03	irgsp1_rep	CDS	31443506	31444429	.	+	0	Parent=Os03t0760200-01
Chr03	irgsp1_rep	CDS	31445156	31445773	.	+	0	Parent=Os03t0760200-01
Chr03	irgsp1_rep	three_prime_UTR	31445774	31446045	.	+	.	Parent=Os03t0760200-01
Chr03	irgsp1_rep	mRNA	31448617	31449807	.	+	.	ID=Os03t0760300-01;Name=Os03t0760300-01;Locus_id=Os03g0760300;Note=CytoChrome P450 family protein.;Transcript_evidence=AK059895 (DDBJ%2C Best hit);ORF_evidence=Q6F4F2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);NIAS_FLcDNA=006-208-E05;Expression=AK059895;TENOR=Os03t0760300-01;KEGG=Os03t0760300-01
Chr03	irgsp1_rep	five_prime_UTR	31448617	31448647	.	+	.	Parent=Os03t0760300-01
Chr03	irgsp1_rep	CDS	31448648	31449688	.	+	0	Parent=Os03t0760300-01
Chr03	irgsp1_rep	three_prime_UTR	31449689	31449807	.	+	.	Parent=Os03t0760300-01
Chr03	irgsp1_rep	mRNA	31453545	31455626	.	+	.	ID=Os03t0760500-01;Name=Os03t0760500-01;Locus_id=Os03g0760500;Note=CytoChrome P450 family protein.;Transcript_evidence=AK100633 (DDBJ%2C Best hit);ORF_evidence=Q6F4F2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J023109P12;Expression=AK100633;TENOR=Os03t0760500-01;KEGG=Os03t0760500-01
Chr03	irgsp1_rep	five_prime_UTR	31453545	31453562	.	+	.	Parent=Os03t0760500-01
Chr03	irgsp1_rep	CDS	31453563	31454501	.	+	0	Parent=Os03t0760500-01
Chr03	irgsp1_rep	CDS	31454679	31455296	.	+	0	Parent=Os03t0760500-01
Chr03	irgsp1_rep	three_prime_UTR	31455297	31455626	.	+	.	Parent=Os03t0760500-01
Chr03	irgsp1_rep	mRNA	31455750	31458865	.	-	.	ID=Os03t0760600-01;Name=Os03t0760600-01;Locus_id=Os03g0760600;Note=TIP41-like protein family protein.;Transcript_evidence=AK103511 (DDBJ%2C Best hit);ORF_evidence=E9P1K9 (UniProt);InterPro=TIP41-like protein (IPR007303);NIAS_FLcDNA=J033131F13;Expression=AK103511;TENOR=Os03t0760600-01;KEGG=Os03t0760600-01
Chr03	irgsp1_rep	five_prime_UTR	31458636	31458865	.	-	.	Parent=Os03t0760600-01
Chr03	irgsp1_rep	CDS	31458487	31458635	.	-	0	Parent=Os03t0760600-01
Chr03	irgsp1_rep	CDS	31457622	31457807	.	-	1	Parent=Os03t0760600-01
Chr03	irgsp1_rep	CDS	31457191	31457281	.	-	1	Parent=Os03t0760600-01
Chr03	irgsp1_rep	CDS	31456966	31457073	.	-	0	Parent=Os03t0760600-01
Chr03	irgsp1_rep	CDS	31456762	31456821	.	-	0	Parent=Os03t0760600-01
Chr03	irgsp1_rep	CDS	31456618	31456659	.	-	0	Parent=Os03t0760600-01
Chr03	irgsp1_rep	CDS	31456131	31456262	.	-	0	Parent=Os03t0760600-01
Chr03	irgsp1_rep	CDS	31455923	31456027	.	-	0	Parent=Os03t0760600-01
Chr03	irgsp1_rep	three_prime_UTR	31455750	31455922	.	-	.	Parent=Os03t0760600-01
Chr03	irgsp1_rep	mRNA	31460436	31463570	.	+	.	ID=Os03t0760700-01;Name=Os03t0760700-01;Locus_id=Os03g0760700;Oryzabase Gene Name Synonym(s)=Aspartate-semialdehyde dehydrogenase;Note=Similar to Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) (Fragment).;Transcript_evidence=AK060701 (DDBJ%2C Best hit);ORF_evidence=B6TWW1 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: cellular amino acid biosynthetic process (GO:0008652),Biological Process: methionine biosynthetic process (GO:0009086),Biological Process: threonine biosynthetic process (GO:0009088),Biological Process: lysine biosynthetic process via diaminopimelate (GO:0009089),Biological Process: isoleucine biosynthetic process (GO:0009097),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: N-acetyl-gamma-glutamyl-phosphate reductase activity (GO:0003942),Molecular Function: aspartate-semialdehyde dehydrogenase activity (GO:0004073),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620),Molecular Function: protein dimerization activity (GO:0046983),Molecular Function: NADP binding (GO:0050661),Molecular Function: NAD binding (GO:0051287);InterPro=Semialdehyde dehydrogenase%2C NAD-binding (IPR000534),Aspartate-semialdehyde dehydrogenase%2C bacterial (IPR005986),Aspartate-semialdehyde dehydrogenase (IPR012080),Semialdehyde dehydrogenase%2C dimerisation domain (IPR012280),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-030-G01;Oryzabase=21957;Expression=AK060701;TENOR=Os03t0760700-01;KEGG=Os03t0760700-01 (EC:1.2.1.11)
Chr03	irgsp1_rep	five_prime_UTR	31460436	31460482	.	+	.	Parent=Os03t0760700-01
Chr03	irgsp1_rep	CDS	31460483	31461040	.	+	0	Parent=Os03t0760700-01
Chr03	irgsp1_rep	CDS	31461795	31461881	.	+	0	Parent=Os03t0760700-01
Chr03	irgsp1_rep	CDS	31461964	31462008	.	+	0	Parent=Os03t0760700-01
Chr03	irgsp1_rep	CDS	31462083	31462178	.	+	0	Parent=Os03t0760700-01
Chr03	irgsp1_rep	CDS	31462296	31462397	.	+	0	Parent=Os03t0760700-01
Chr03	irgsp1_rep	CDS	31462854	31462940	.	+	0	Parent=Os03t0760700-01
Chr03	irgsp1_rep	CDS	31463091	31463158	.	+	0	Parent=Os03t0760700-01
Chr03	irgsp1_rep	CDS	31463278	31463362	.	+	1	Parent=Os03t0760700-01
Chr03	irgsp1_rep	three_prime_UTR	31463363	31463570	.	+	.	Parent=Os03t0760700-01
Chr03	irgsp1_rep	mRNA	31464821	31465623	.	-	.	ID=Os03t0760800-01;Name=Os03t0760800-01;Locus_id=Os03g0760800;RAP-DB Gene Symbol Synonym(s)=GASR1%2C OsGASR1;RAP-DB Gene Name Synonym(s)=GA Stimulated Rice 1%2C GA-stimulated transcript-related gene 1;Oryzabase Gene Symbol Synonym(s)=OsGASR1%2C GASR1;Oryzabase Gene Name Synonym(s)=GAST (GA-stimulated transcript) homolog 1%2C GAST homolog 1%2C GA-stimulated transcript homolog 1%2C GA-stimulated transcript-related gene 1;Note=A member of the GAST (gibberellin (GA)-Stimulated Transcript) family%2C Control of seedling growth and &alpha%3B-amylase expression%2C Cell proliferation in meristems and panicles development;Transcript_evidence=AK121316,AB192574;ORF_evidence=Q94HA1;InterPro=Gibberellin regulated protein (IPR003854);NIAS_FLcDNA=J023113B01;Manual Curation=June 14%2C 2017;Literature_PMID=28482332,16905871;Oryzabase=14271;Expression=AK121316;TENOR=Os03t0760800-01;KEGG=Os03t0760800-01;Subcellular location=apoplast (GO:0048046), cell wall (GO:0005618)
Chr03	irgsp1_rep	five_prime_UTR	31465558	31465623	.	-	.	Parent=Os03t0760800-01
Chr03	irgsp1_rep	CDS	31465470	31465557	.	-	0	Parent=Os03t0760800-01
Chr03	irgsp1_rep	CDS	31465171	31465364	.	-	2	Parent=Os03t0760800-01
Chr03	irgsp1_rep	three_prime_UTR	31464821	31465170	.	-	.	Parent=Os03t0760800-01
Chr03	irgsp1_rep	mRNA	31468683	31469411	.	+	.	ID=Os03t0760900-00;Name=Os03t0760900-00;Locus_id=Os03g0760900;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001173649.1 (RefSeq);TENOR=Os03t0760900-00;KEGG=Os03t0760900-00
Chr03	irgsp1_rep	CDS	31468683	31469411	.	+	0	Parent=Os03t0760900-00
Chr03	irgsp1_rep	mRNA	31469926	31471769	.	-	.	ID=Os03t0761000-01;Name=Os03t0761000-01;Locus_id=Os03g0761000;Note=SWIB/MDM2 domain containing protein.;Transcript_evidence=AK243180 (DDBJ%2C Best hit);ORF_evidence=B6TTM2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=SWIB/MDM2 domain (IPR003121),SWIB domain (IPR019835);NIAS_FLcDNA=J100037D16;TENOR=Os03t0761000-01;KEGG=Os03t0761000-01
Chr03	irgsp1_rep	five_prime_UTR	31471716	31471769	.	-	.	Parent=Os03t0761000-01
Chr03	irgsp1_rep	CDS	31471401	31471715	.	-	0	Parent=Os03t0761000-01
Chr03	irgsp1_rep	CDS	31470223	31470342	.	-	0	Parent=Os03t0761000-01
Chr03	irgsp1_rep	three_prime_UTR	31469926	31470222	.	-	.	Parent=Os03t0761000-01
Chr03	irgsp1_rep	mRNA	31472175	31474811	.	-	.	ID=Os03t0761100-01;Name=Os03t0761100-01;Locus_id=Os03g0761100;Oryzabase Gene Symbol Synonym(s)=OsPP2C34%2C PP2C34%2C OsPP55%2C OsBIPP2C2%2C OsBIPP2C2a%2C OsBIPP2C2b%2C OsBIPP2C2c;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C34%2C protein phosphatase 2C 34%2C protein phosphatase 55%2C BTH-induced protein phosphatase 2C 2;Note=Protein phosphatase 2C-like protein.;Transcript_evidence=AK105764 (DDBJ%2C Best hit);ORF_evidence=NP_195118.1 (RefSeq);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=001-202-D12;Oryzabase=17909;TENOR=Os03t0761100-01
Chr03	irgsp1_rep	five_prime_UTR	31474650	31474811	.	-	.	Parent=Os03t0761100-01
Chr03	irgsp1_rep	CDS	31474391	31474649	.	-	0	Parent=Os03t0761100-01
Chr03	irgsp1_rep	CDS	31473940	31474307	.	-	2	Parent=Os03t0761100-01
Chr03	irgsp1_rep	CDS	31472908	31473144	.	-	0	Parent=Os03t0761100-01
Chr03	irgsp1_rep	CDS	31472506	31472784	.	-	0	Parent=Os03t0761100-01
Chr03	irgsp1_rep	three_prime_UTR	31472175	31472505	.	-	.	Parent=Os03t0761100-01
Chr03	irgsp1_rep	mRNA	31472117	31474768	.	-	.	ID=Os03t0761100-02;Name=Os03t0761100-02;Locus_id=Os03g0761100;Oryzabase Gene Symbol Synonym(s)=OsPP2C34%2C PP2C34%2C OsPP55%2C OsBIPP2C2%2C OsBIPP2C2a%2C OsBIPP2C2b%2C OsBIPP2C2c;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C34%2C protein phosphatase 2C 34%2C protein phosphatase 55%2C BTH-induced protein phosphatase 2C 2;Note=Similar to protein phosphatase 2C family protein / PP2C family protein.;Transcript_evidence=AK066083 (DDBJ%2C Best hit);ORF_evidence=NP_195118.1 (RefSeq);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J013050O18;Oryzabase=17909;Expression=AK066083;TENOR=Os03t0761100-02;KEGG=Os03t0761100-02
Chr03	irgsp1_rep	five_prime_UTR	31474650	31474768	.	-	.	Parent=Os03t0761100-02
Chr03	irgsp1_rep	CDS	31474391	31474649	.	-	0	Parent=Os03t0761100-02
Chr03	irgsp1_rep	CDS	31473940	31474307	.	-	2	Parent=Os03t0761100-02
Chr03	irgsp1_rep	CDS	31472818	31473144	.	-	0	Parent=Os03t0761100-02
Chr03	irgsp1_rep	three_prime_UTR	31472117	31472817	.	-	.	Parent=Os03t0761100-02
Chr03	irgsp1_rep	mRNA	31472175	31474705	.	-	.	ID=Os03t0761100-03;Name=Os03t0761100-03;Locus_id=Os03g0761100;Oryzabase Gene Symbol Synonym(s)=OsPP2C34%2C PP2C34%2C OsPP55%2C OsBIPP2C2%2C OsBIPP2C2a%2C OsBIPP2C2b%2C OsBIPP2C2c;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C34%2C protein phosphatase 2C 34%2C protein phosphatase 55%2C BTH-induced protein phosphatase 2C 2;Note=Protein phosphatase 2C-like protein.;Transcript_evidence=AK102620 (DDBJ%2C Best hit);ORF_evidence=NP_195118.1 (RefSeq);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J033099H11;Oryzabase=17909;TENOR=Os03t0761100-03
Chr03	irgsp1_rep	five_prime_UTR	31474650	31474705	.	-	.	Parent=Os03t0761100-03
Chr03	irgsp1_rep	CDS	31474391	31474649	.	-	0	Parent=Os03t0761100-03
Chr03	irgsp1_rep	CDS	31473940	31474307	.	-	2	Parent=Os03t0761100-03
Chr03	irgsp1_rep	CDS	31472908	31473144	.	-	0	Parent=Os03t0761100-03
Chr03	irgsp1_rep	CDS	31472506	31472784	.	-	0	Parent=Os03t0761100-03
Chr03	irgsp1_rep	three_prime_UTR	31472175	31472505	.	-	.	Parent=Os03t0761100-03
Chr03	irgsp1_rep	mRNA	31476241	31480062	.	-	.	ID=Os03t0761200-01;Name=Os03t0761200-01;Locus_id=Os03g0761200;Note=Ankyrin repeat containing protein.;Transcript_evidence=AK101534 (DDBJ%2C Best hit),AK064205 (DDBJ%2C Best hit);ORF_evidence=NP_001152671.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Ankyrin repeat (IPR002110),Arginine N-methyltransferase 2 (IPR017408),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J033048C14,002-104-E04;TENOR=Os03t0761200-01
Chr03	irgsp1_rep	five_prime_UTR	31480031	31480062	.	-	.	Parent=Os03t0761200-01
Chr03	irgsp1_rep	CDS	31479340	31480030	.	-	0	Parent=Os03t0761200-01
Chr03	irgsp1_rep	CDS	31476693	31477009	.	-	2	Parent=Os03t0761200-01
Chr03	irgsp1_rep	three_prime_UTR	31476241	31476692	.	-	.	Parent=Os03t0761200-01
Chr03	irgsp1_rep	mRNA	31476705	31479545	.	+	.	ID=Os03t0761250-00;Name=Os03t0761250-00;Locus_id=Os03g0761250;Note=Hypothetical gene.;Transcript_evidence=BT019299 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0761250-00
Chr03	irgsp1_rep	five_prime_UTR	31476705	31476950	.	+	.	Parent=Os03t0761250-00
Chr03	irgsp1_rep	CDS	31476951	31477018	.	+	0	Parent=Os03t0761250-00
Chr03	irgsp1_rep	CDS	31479349	31479545	.	+	1	Parent=Os03t0761250-00
Chr03	irgsp1_rep	mRNA	31480148	31483288	.	+	.	ID=Os03t0761300-01;Name=Os03t0761300-01;Locus_id=Os03g0761300;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK066684 (DDBJ%2C Best hit);ORF_evidence=NP_001186539.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013068H20;Expression=AK066684;TENOR=Os03t0761300-01;KEGG=Os03t0761300-01
Chr03	irgsp1_rep	five_prime_UTR	31480148	31480338	.	+	.	Parent=Os03t0761300-01
Chr03	irgsp1_rep	CDS	31480339	31481793	.	+	0	Parent=Os03t0761300-01
Chr03	irgsp1_rep	three_prime_UTR	31481794	31481812	.	+	.	Parent=Os03t0761300-01
Chr03	irgsp1_rep	three_prime_UTR	31481968	31483288	.	+	.	Parent=Os03t0761300-01
Chr03	irgsp1_rep	mRNA	31488028	31490839	.	-	.	ID=Os03t0761500-01;Name=Os03t0761500-01;Locus_id=Os03g0761500;Oryzabase Gene Symbol Synonym(s)=OsSub31%2C SUB31;Oryzabase Gene Name Synonym(s)=Subtilisin 31%2C SUBTILISIN 31;Note=Similar to Subtilisin-like protease (Fragment).;Transcript_evidence=AK103255 (DDBJ%2C Best hit);ORF_evidence=B6U0R8 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Proteinase inhibitor%2C propeptide (IPR009020),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);NIAS_FLcDNA=J033123P12;Oryzabase=20117;Expression=AK103255;TENOR=Os03t0761500-01;KEGG=Os03t0761500-01 (EC:3.4.21.62)
Chr03	irgsp1_rep	five_prime_UTR	31490593	31490839	.	-	.	Parent=Os03t0761500-01
Chr03	irgsp1_rep	CDS	31488298	31490592	.	-	0	Parent=Os03t0761500-01
Chr03	irgsp1_rep	three_prime_UTR	31488028	31488297	.	-	.	Parent=Os03t0761500-01
Chr03	irgsp1_rep	mRNA	31487980	31490644	.	-	.	ID=Os03t0761500-02;Name=Os03t0761500-02;Locus_id=Os03g0761500;Oryzabase Gene Symbol Synonym(s)=OsSub31%2C SUB31;Oryzabase Gene Name Synonym(s)=Subtilisin 31%2C SUBTILISIN 31;Note=Similar to Subtilisin-like protease (Fragment).;Transcript_evidence=AK101646 (DDBJ%2C Best hit);ORF_evidence=B6U0R8 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Proteinase inhibitor%2C propeptide (IPR009020),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);NIAS_FLcDNA=J033055P14;Oryzabase=20117;Expression=AK101646;TENOR=Os03t0761500-02;KEGG=Os03t0761500-02 (EC:3.4.21.62)
Chr03	irgsp1_rep	five_prime_UTR	31490593	31490644	.	-	.	Parent=Os03t0761500-02
Chr03	irgsp1_rep	CDS	31488298	31490592	.	-	0	Parent=Os03t0761500-02
Chr03	irgsp1_rep	three_prime_UTR	31487980	31488297	.	-	.	Parent=Os03t0761500-02
Chr03	irgsp1_rep	mRNA	31495921	31500078	.	+	.	ID=Os03t0761700-01;Name=Os03t0761700-01;Locus_id=Os03g0761700;Oryzabase Gene Symbol Synonym(s)=OsDjC34;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C34;Note=Heat shock protein DnaJ family protein.;Transcript_evidence=AK068309 (DDBJ%2C Best hit);ORF_evidence=A2XM85 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095);NIAS_FLcDNA=J013149B16;Oryzabase=12191;Expression=AK068309;TENOR=Os03t0761700-01;KEGG=Os03t0761700-01
Chr03	irgsp1_rep	five_prime_UTR	31495921	31495961	.	+	.	Parent=Os03t0761700-01
Chr03	irgsp1_rep	CDS	31495962	31496240	.	+	0	Parent=Os03t0761700-01
Chr03	irgsp1_rep	CDS	31496451	31497302	.	+	0	Parent=Os03t0761700-01
Chr03	irgsp1_rep	CDS	31497508	31497593	.	+	0	Parent=Os03t0761700-01
Chr03	irgsp1_rep	CDS	31497943	31498077	.	+	1	Parent=Os03t0761700-01
Chr03	irgsp1_rep	CDS	31498486	31498651	.	+	1	Parent=Os03t0761700-01
Chr03	irgsp1_rep	three_prime_UTR	31498652	31498940	.	+	.	Parent=Os03t0761700-01
Chr03	irgsp1_rep	three_prime_UTR	31499567	31499764	.	+	.	Parent=Os03t0761700-01
Chr03	irgsp1_rep	three_prime_UTR	31499903	31500078	.	+	.	Parent=Os03t0761700-01
Chr03	irgsp1_rep	mRNA	31495998	31500606	.	+	.	ID=Os03t0761700-02;Name=Os03t0761700-02;Locus_id=Os03g0761700;Oryzabase Gene Symbol Synonym(s)=OsDjC34;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C34;Note=Hypothetical conserved gene.;Transcript_evidence=AK289057 (DDBJ%2C Best hit);ORF_evidence=NP_001051354.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095);NIAS_FLcDNA=J090093G03;Oryzabase=12191;TENOR=Os03t0761700-02;KEGG=Os03t0761700-02
Chr03	irgsp1_rep	CDS	31495998	31496240	.	+	0	Parent=Os03t0761700-02
Chr03	irgsp1_rep	CDS	31496451	31496782	.	+	0	Parent=Os03t0761700-02
Chr03	irgsp1_rep	CDS	31496861	31497302	.	+	1	Parent=Os03t0761700-02
Chr03	irgsp1_rep	CDS	31497508	31497593	.	+	0	Parent=Os03t0761700-02
Chr03	irgsp1_rep	CDS	31497943	31498077	.	+	1	Parent=Os03t0761700-02
Chr03	irgsp1_rep	CDS	31498486	31498651	.	+	1	Parent=Os03t0761700-02
Chr03	irgsp1_rep	three_prime_UTR	31498652	31498940	.	+	.	Parent=Os03t0761700-02
Chr03	irgsp1_rep	three_prime_UTR	31499567	31499764	.	+	.	Parent=Os03t0761700-02
Chr03	irgsp1_rep	three_prime_UTR	31499903	31500606	.	+	.	Parent=Os03t0761700-02
Chr03	irgsp1_rep	mRNA	31503761	31507752	.	+	.	ID=Os03t0761900-01;Name=Os03t0761900-01;Locus_id=Os03g0761900;Note=Similar to Prolyl 4-hydroxylase.;Transcript_evidence=AK109047 (DDBJ%2C Best hit);ORF_evidence=B6TKD8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706),Molecular Function: L-ascorbic acid binding (GO:0031418);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123),Prolyl 4-hydroxylase%2C alpha subunit (IPR006620);NIAS_FLcDNA=002-154-D12;Expression=AK109047;TENOR=Os03t0761900-01;KEGG=Os03t0761900-01 (EC:1.14.11.2)
Chr03	irgsp1_rep	five_prime_UTR	31503761	31503829	.	+	.	Parent=Os03t0761900-01
Chr03	irgsp1_rep	CDS	31503830	31504009	.	+	0	Parent=Os03t0761900-01
Chr03	irgsp1_rep	CDS	31504126	31504248	.	+	0	Parent=Os03t0761900-01
Chr03	irgsp1_rep	CDS	31505177	31505334	.	+	0	Parent=Os03t0761900-01
Chr03	irgsp1_rep	CDS	31505801	31505903	.	+	1	Parent=Os03t0761900-01
Chr03	irgsp1_rep	CDS	31506483	31506578	.	+	0	Parent=Os03t0761900-01
Chr03	irgsp1_rep	CDS	31506773	31506838	.	+	0	Parent=Os03t0761900-01
Chr03	irgsp1_rep	CDS	31506906	31507025	.	+	0	Parent=Os03t0761900-01
Chr03	irgsp1_rep	CDS	31507311	31507397	.	+	0	Parent=Os03t0761900-01
Chr03	irgsp1_rep	three_prime_UTR	31507398	31507752	.	+	.	Parent=Os03t0761900-01
Chr03	irgsp1_rep	mRNA	31511520	31514398	.	-	.	ID=Os03t0762000-01;Name=Os03t0762000-01;Locus_id=Os03g0762000;CGSNL Gene Symbol=HD6;CGSNL Gene Name=HEADING DATE 6;Oryzabase Gene Symbol Synonym(s)=Hd6(t)*%2C OSCKA2%2C OsCKA2%2C CKA2%2C OsCKA2-1%2C CKA2-1%2C Hd6/CK2alpha%2C CK2alpha;Oryzabase Gene Name Synonym(s)=Heading date (QTL)-6(t)%2C Heading date-6%2C Heading date6%2C casein kinase II alpha subunit%2C CK2alpha subunit 1%2C Casein Kinase 2alpha;Note=Similar to Protein kinase CK2%2C alpha subunit.;Transcript_evidence=CT837832 (DDBJ%2C Best hit);ORF_evidence=Q9ST47 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);Oryzabase=529;TENOR=Os03t0762000-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	31514342	31514398	.	-	.	Parent=Os03t0762000-01
Chr03	irgsp1_rep	CDS	31514091	31514341	.	-	0	Parent=Os03t0762000-01
Chr03	irgsp1_rep	CDS	31512595	31512724	.	-	1	Parent=Os03t0762000-01
Chr03	irgsp1_rep	CDS	31512458	31512514	.	-	0	Parent=Os03t0762000-01
Chr03	irgsp1_rep	three_prime_UTR	31512320	31512457	.	-	.	Parent=Os03t0762000-01
Chr03	irgsp1_rep	three_prime_UTR	31511520	31511653	.	-	.	Parent=Os03t0762000-01
Chr03	irgsp1_rep	mRNA	31508813	31514460	.	-	.	ID=Os03t0762000-02;Name=Os03t0762000-02;Locus_id=Os03g0762000;RAP-DB Gene Symbol Synonym(s)=HD6%2C Hd6%2C Hd6(t)*%2C OsCKA2%2C OSCKA2;RAP-DB Gene Name Synonym(s)=HEADING DATE 6%2C Heading date 6%2C Heading date (QTL)-6(t)%2C Heading date-6%2C casein kinase II alpha subunit;CGSNL Gene Symbol=HD6;CGSNL Gene Name=HEADING DATE 6;Oryzabase Gene Symbol Synonym(s)=Hd6(t)*%2C OSCKA2%2C OsCKA2%2C CKA2%2C OsCKA2-1%2C CKA2-1%2C Hd6/CK2alpha%2C CK2alpha;Oryzabase Gene Name Synonym(s)=Heading date (QTL)-6(t)%2C Heading date-6%2C Heading date6%2C casein kinase II alpha subunit%2C CK2alpha subunit 1%2C Casein Kinase 2alpha;Note=Casein kinase II alpha subunit%2C Heading date%2C Photoperiod sensitivity;Transcript_evidence=AB036785 (DDBJ),AB036787 (DDBJ);ORF_evidence=Q9AQU1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);Manual Curation=August 2%2C 2009;Literature_PMID=11743085,17406851,11416158,20007447;Oryzabase=529;TENOR=Os03t0762000-02
Chr03	irgsp1_rep	five_prime_UTR	31514177	31514460	.	-	.	Parent=Os03t0762000-02
Chr03	irgsp1_rep	CDS	31514091	31514176	.	-	0	Parent=Os03t0762000-02
Chr03	irgsp1_rep	CDS	31512595	31512724	.	-	1	Parent=Os03t0762000-02
Chr03	irgsp1_rep	CDS	31512458	31512514	.	-	0	Parent=Os03t0762000-02
Chr03	irgsp1_rep	three_prime_UTR	31512320	31512457	.	-	.	Parent=Os03t0762000-02
Chr03	irgsp1_rep	three_prime_UTR	31511496	31511653	.	-	.	Parent=Os03t0762000-02
Chr03	irgsp1_rep	three_prime_UTR	31510832	31510922	.	-	.	Parent=Os03t0762000-02
Chr03	irgsp1_rep	three_prime_UTR	31510649	31510714	.	-	.	Parent=Os03t0762000-02
Chr03	irgsp1_rep	three_prime_UTR	31510004	31510086	.	-	.	Parent=Os03t0762000-02
Chr03	irgsp1_rep	three_prime_UTR	31509864	31509927	.	-	.	Parent=Os03t0762000-02
Chr03	irgsp1_rep	three_prime_UTR	31509718	31509786	.	-	.	Parent=Os03t0762000-02
Chr03	irgsp1_rep	three_prime_UTR	31508813	31509060	.	-	.	Parent=Os03t0762000-02
Chr03	irgsp1_rep	mRNA	31517358	31518881	.	-	.	ID=Os03t0762100-01;Name=Os03t0762100-01;Locus_id=Os03g0762100;Note=Conserved hypothetical protein.;Transcript_evidence=AK108604 (DDBJ%2C Best hit);ORF_evidence=B8AK93 (UniProt);NIAS_FLcDNA=002-146-G01;Expression=AK108604;TENOR=Os03t0762100-01;KEGG=Os03t0762100-01
Chr03	irgsp1_rep	five_prime_UTR	31518812	31518881	.	-	.	Parent=Os03t0762100-01
Chr03	irgsp1_rep	five_prime_UTR	31518343	31518373	.	-	.	Parent=Os03t0762100-01
Chr03	irgsp1_rep	CDS	31518250	31518342	.	-	0	Parent=Os03t0762100-01
Chr03	irgsp1_rep	CDS	31517559	31518158	.	-	0	Parent=Os03t0762100-01
Chr03	irgsp1_rep	three_prime_UTR	31517358	31517558	.	-	.	Parent=Os03t0762100-01
Chr03	irgsp1_rep	mRNA	31519707	31520219	.	-	.	ID=Os03t0762150-00;Name=Os03t0762150-00;Locus_id=Os03g0762150;Note=Non-protein coding transcript.;Transcript_evidence=EU945544 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0762150-00
Chr03	irgsp1_rep	exon	31519707	31520219	.	-	.	Parent=Os03t0762150-00
Chr03	irgsp1_rep	mRNA	31526602	31528069	.	-	.	ID=Os03t0762200-01;Name=Os03t0762200-01;Locus_id=Os03g0762200;Oryzabase Gene Symbol Synonym(s)=prx50;Oryzabase Gene Name Synonym(s)=class III peroxidase 50;Note=Hypothetical protein.;Transcript_evidence=AK107203 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-125-B06;Oryzabase=14576;Expression=AK107203;TENOR=Os03t0762200-01;KEGG=Os03t0762200-01
Chr03	irgsp1_rep	five_prime_UTR	31527256	31528069	.	-	.	Parent=Os03t0762200-01
Chr03	irgsp1_rep	CDS	31526746	31527255	.	-	0	Parent=Os03t0762200-01
Chr03	irgsp1_rep	three_prime_UTR	31526602	31526745	.	-	.	Parent=Os03t0762200-01
Chr03	irgsp1_rep	mRNA	31526726	31528230	.	+	.	ID=Os03t0762300-01;Name=Os03t0762300-01;Locus_id=Os03g0762300;Note=Similar to Peroxidase 51 precursor (EC 1.11.1.7) (Atperox P51) (ATP37).;Transcript_evidence=AK060007 (DDBJ%2C Best hit),AK104448 (DDBJ%2C Best hit);ORF_evidence=NP_001152260.1 (RefSeq);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793);NIAS_FLcDNA=006-302-C05,006-211-H10;TENOR=Os03t0762300-01
Chr03	irgsp1_rep	five_prime_UTR	31526726	31526729	.	+	.	Parent=Os03t0762300-01
Chr03	irgsp1_rep	CDS	31526730	31526966	.	+	0	Parent=Os03t0762300-01
Chr03	irgsp1_rep	CDS	31527068	31527262	.	+	0	Parent=Os03t0762300-01
Chr03	irgsp1_rep	CDS	31527339	31527504	.	+	0	Parent=Os03t0762300-01
Chr03	irgsp1_rep	CDS	31527599	31528005	.	+	2	Parent=Os03t0762300-01
Chr03	irgsp1_rep	three_prime_UTR	31528006	31528230	.	+	.	Parent=Os03t0762300-01
Chr03	irgsp1_rep	mRNA	31526874	31528248	.	+	.	ID=Os03t0762300-02;Name=Os03t0762300-02;Locus_id=Os03g0762300;Note=Similar to peroxidase 51.;Transcript_evidence=AK058884 (DDBJ%2C Best hit);ORF_evidence=NP_001152260.1 (RefSeq);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793);NIAS_FLcDNA=001-007-C04;TENOR=Os03t0762300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	31526874	31526900	.	+	.	Parent=Os03t0762300-02
Chr03	irgsp1_rep	CDS	31526901	31526966	.	+	0	Parent=Os03t0762300-02
Chr03	irgsp1_rep	CDS	31527068	31527262	.	+	0	Parent=Os03t0762300-02
Chr03	irgsp1_rep	CDS	31527339	31527504	.	+	0	Parent=Os03t0762300-02
Chr03	irgsp1_rep	CDS	31527599	31528005	.	+	2	Parent=Os03t0762300-02
Chr03	irgsp1_rep	three_prime_UTR	31528006	31528248	.	+	.	Parent=Os03t0762300-02
Chr03	irgsp1_rep	mRNA	31530815	31533502	.	+	.	ID=Os03t0762400-01;Name=Os03t0762400-01;Locus_id=Os03g0762400;Oryzabase Gene Symbol Synonym(s)=prx51;Oryzabase Gene Name Synonym(s)=class III peroxidase 51;Note=Similar to Peroxidase2 precursor (EC 1.11.1.7).;Transcript_evidence=AK071181 (DDBJ%2C Best hit);ORF_evidence=C9WF06 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J023084I20;Oryzabase=14577;Expression=AK071181;TENOR=Os03t0762400-01;KEGG=Os03t0762400-01 (EC:1.11.1.7)
Chr03	irgsp1_rep	five_prime_UTR	31530815	31530920	.	+	.	Parent=Os03t0762400-01
Chr03	irgsp1_rep	CDS	31530921	31531130	.	+	0	Parent=Os03t0762400-01
Chr03	irgsp1_rep	CDS	31531235	31531435	.	+	0	Parent=Os03t0762400-01
Chr03	irgsp1_rep	CDS	31531584	31531749	.	+	0	Parent=Os03t0762400-01
Chr03	irgsp1_rep	CDS	31532823	31533220	.	+	2	Parent=Os03t0762400-01
Chr03	irgsp1_rep	three_prime_UTR	31533221	31533502	.	+	.	Parent=Os03t0762400-01
Chr03	irgsp1_rep	mRNA	31531190	31533256	.	-	.	ID=Os03t0762450-00;Name=Os03t0762450-00;Locus_id=Os03g0762450;Note=Conserved hypothetical protein.;Transcript_evidence=EU942261 (DDBJ);ORF_evidence=C0PBU1 (UniProt);TENOR=Os03t0762450-00
Chr03	irgsp1_rep	five_prime_UTR	31533058	31533256	.	-	.	Parent=Os03t0762450-00
Chr03	irgsp1_rep	CDS	31532831	31533057	.	-	0	Parent=Os03t0762450-00
Chr03	irgsp1_rep	CDS	31531190	31531757	.	-	1	Parent=Os03t0762450-00
Chr03	irgsp1_rep	mRNA	31537855	31538761	.	+	.	ID=Os03t0762500-01;Name=Os03t0762500-01;Locus_id=Os03g0762500;Note=Conserved hypothetical protein.;Transcript_evidence=AK103002 (DDBJ%2C Best hit);ORF_evidence=Q10ET4 (UniProt);NIAS_FLcDNA=J033116G06;TENOR=Os03t0762500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	31537855	31538060	.	+	.	Parent=Os03t0762500-01
Chr03	irgsp1_rep	five_prime_UTR	31538136	31538350	.	+	.	Parent=Os03t0762500-01
Chr03	irgsp1_rep	CDS	31538351	31538761	.	+	0	Parent=Os03t0762500-01
Chr03	irgsp1_rep	mRNA	31542955	31544614	.	-	.	ID=Os03t0762700-01;Name=Os03t0762700-01;Locus_id=Os03g0762700;Note=Transcriptional coactivator SAGA-type complex%2C Ada1/Tada1 domain containing protein.;Transcript_evidence=AK242545 (DDBJ%2C Best hit);ORF_evidence=NP_001051362.2 (RefSeq);GO=Cellular Component: SAGA-type complex (GO:0070461);InterPro=Transcriptional coactivator SAGA-type complex%2C Ada1/Tada1 (IPR024738);NIAS_FLcDNA=J080318F13;TENOR=Os03t0762700-01;KEGG=Os03t0762700-01
Chr03	irgsp1_rep	five_prime_UTR	31544532	31544614	.	-	.	Parent=Os03t0762700-01
Chr03	irgsp1_rep	five_prime_UTR	31544385	31544431	.	-	.	Parent=Os03t0762700-01
Chr03	irgsp1_rep	CDS	31543473	31544384	.	-	0	Parent=Os03t0762700-01
Chr03	irgsp1_rep	three_prime_UTR	31542955	31543472	.	-	.	Parent=Os03t0762700-01
Chr03	irgsp1_rep	mRNA	31548013	31548744	.	-	.	ID=Os03t0762800-01;Name=Os03t0762800-01;Locus_id=Os03g0762800;Note=Hypothetical conserved gene.;Transcript_evidence=AK063359 (DDBJ%2C Best hit);ORF_evidence=B9F5U5 (UniProt);NIAS_FLcDNA=001-114-C10;Expression=AK063359;TENOR=Os03t0762800-01;KEGG=Os03t0762800-01
Chr03	irgsp1_rep	five_prime_UTR	31548620	31548744	.	-	.	Parent=Os03t0762800-01
Chr03	irgsp1_rep	CDS	31548476	31548619	.	-	0	Parent=Os03t0762800-01
Chr03	irgsp1_rep	CDS	31548176	31548265	.	-	0	Parent=Os03t0762800-01
Chr03	irgsp1_rep	three_prime_UTR	31548013	31548175	.	-	.	Parent=Os03t0762800-01
Chr03	irgsp1_rep	mRNA	31553921	31558309	.	+	.	ID=Os03t0762900-01;Name=Os03t0762900-01;Locus_id=Os03g0762900;Note=Protein of unknown function DUF566 family protein.;Transcript_evidence=AK068645 (DDBJ%2C Best hit);ORF_evidence=B8AKL4 (UniProt);InterPro=Protein of unknown function DUF566 (IPR007573);NIAS_FLcDNA=J013158C12;Expression=AK068645;TENOR=Os03t0762900-01;KEGG=Os03t0762900-01
Chr03	irgsp1_rep	five_prime_UTR	31553921	31554072	.	+	.	Parent=Os03t0762900-01
Chr03	irgsp1_rep	CDS	31554073	31555416	.	+	0	Parent=Os03t0762900-01
Chr03	irgsp1_rep	CDS	31556159	31556278	.	+	0	Parent=Os03t0762900-01
Chr03	irgsp1_rep	CDS	31556808	31556924	.	+	0	Parent=Os03t0762900-01
Chr03	irgsp1_rep	CDS	31557022	31557111	.	+	0	Parent=Os03t0762900-01
Chr03	irgsp1_rep	CDS	31557686	31557793	.	+	0	Parent=Os03t0762900-01
Chr03	irgsp1_rep	CDS	31557888	31557956	.	+	0	Parent=Os03t0762900-01
Chr03	irgsp1_rep	three_prime_UTR	31557957	31558309	.	+	.	Parent=Os03t0762900-01
Chr03	irgsp1_rep	mRNA	31566050	31570471	.	+	.	ID=Os03t0763000-01;Name=Os03t0763000-01;Locus_id=Os03g0763000;Oryzabase Gene Symbol Synonym(s)=OsCKA2-4%2C CKA2-4;Oryzabase Gene Name Synonym(s)=casein kinase II alpha-subunit 4%2C CK2 alpha-subunit 4%2C CK2 alpha subunit 4;Note=Similar to Casein kinase II alpha subunit.;Transcript_evidence=AK120812 (DDBJ%2C Best hit);ORF_evidence=Q8VX01 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023014H13;Oryzabase=21081;Expression=AK120812;TENOR=Os03t0763000-01;KEGG=Os03t0763000-01 (EC:2.7.11.1)
Chr03	irgsp1_rep	five_prime_UTR	31566050	31566109	.	+	.	Parent=Os03t0763000-01
Chr03	irgsp1_rep	CDS	31566110	31566444	.	+	0	Parent=Os03t0763000-01
Chr03	irgsp1_rep	CDS	31566552	31566681	.	+	1	Parent=Os03t0763000-01
Chr03	irgsp1_rep	CDS	31567115	31567309	.	+	0	Parent=Os03t0763000-01
Chr03	irgsp1_rep	CDS	31568645	31568802	.	+	0	Parent=Os03t0763000-01
Chr03	irgsp1_rep	CDS	31569163	31569253	.	+	1	Parent=Os03t0763000-01
Chr03	irgsp1_rep	CDS	31569331	31569396	.	+	0	Parent=Os03t0763000-01
Chr03	irgsp1_rep	CDS	31569738	31569820	.	+	0	Parent=Os03t0763000-01
Chr03	irgsp1_rep	CDS	31569902	31569965	.	+	1	Parent=Os03t0763000-01
Chr03	irgsp1_rep	CDS	31570048	31570116	.	+	0	Parent=Os03t0763000-01
Chr03	irgsp1_rep	CDS	31570205	31570240	.	+	0	Parent=Os03t0763000-01
Chr03	irgsp1_rep	three_prime_UTR	31570241	31570471	.	+	.	Parent=Os03t0763000-01
Chr03	irgsp1_rep	mRNA	31597160	31599655	.	+	.	ID=Os03t0764000-00;Name=Os03t0764000-00;Locus_id=Os03g0764000;Note=Acyl-CoA N-acyltransferase domain containing protein.;Transcript_evidence=CT831785 (DDBJ%2C Best hit);ORF_evidence=NP_195474.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: N-acetyltransferase activity (GO:0008080);InterPro=GCN5-related N-acetyltransferase (GNAT) domain (IPR000182),Acyl-CoA N-acyltransferase (IPR016181);TENOR=Os03t0764000-00;KEGG=Os03t0764000-00
Chr03	irgsp1_rep	five_prime_UTR	31597160	31597804	.	+	.	Parent=Os03t0764000-00
Chr03	irgsp1_rep	CDS	31597805	31598026	.	+	0	Parent=Os03t0764000-00
Chr03	irgsp1_rep	CDS	31598195	31598364	.	+	0	Parent=Os03t0764000-00
Chr03	irgsp1_rep	CDS	31598550	31599399	.	+	1	Parent=Os03t0764000-00
Chr03	irgsp1_rep	three_prime_UTR	31599400	31599655	.	+	.	Parent=Os03t0764000-00
Chr03	irgsp1_rep	mRNA	31604982	31606215	.	-	.	ID=Os03t0764100-01;Name=Os03t0764100-01;Locus_id=Os03g0764100;Oryzabase Gene Symbol Synonym(s)=WZF1%2C OsWZF1%2C DLN99%2C OsDLN99;Oryzabase Gene Name Synonym(s)=finger protein WZF1%2C DLN repressor 99%2C DLN motif protein 99;Note=Zinc finger transcription factor ZF1.;Transcript_evidence=AK072942 (DDBJ%2C Best hit);ORF_evidence=Q9AXE9 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J023150M05;Oryzabase=16038;Expression=AK072942;TENOR=Os03t0764100-01;KEGG=Os03t0764100-01
Chr03	irgsp1_rep	five_prime_UTR	31606087	31606215	.	-	.	Parent=Os03t0764100-01
Chr03	irgsp1_rep	CDS	31605277	31606086	.	-	0	Parent=Os03t0764100-01
Chr03	irgsp1_rep	three_prime_UTR	31604982	31605276	.	-	.	Parent=Os03t0764100-01
Chr03	irgsp1_rep	mRNA	31605878	31606144	.	+	.	ID=Os03t0764125-00;Name=Os03t0764125-00;Locus_id=Os03g0764125;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os03t0764125-00
Chr03	irgsp1_rep	CDS	31605878	31606144	.	+	0	Parent=Os03t0764125-00
Chr03	irgsp1_rep	mRNA	31608650	31609860	.	+	.	ID=Os03t0764150-01;Name=Os03t0764150-01;Locus_id=Os03g0764150;Note=Non-protein coding transcript.;Transcript_evidence=AK243023 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J100001H23;TENOR=Os03t0764150-01
Chr03	irgsp1_rep	exon	31608650	31609860	.	+	.	Parent=Os03t0764150-01
Chr03	irgsp1_rep	mRNA	31612444	31619518	.	+	.	ID=Os03t0764250-01;Name=Os03t0764250-01;Locus_id=Os03g0764250;Note=Hypothetical gene.;Transcript_evidence=AK240671 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os03t0764250-01;KEGG=Os03t0764250-01
Chr03	irgsp1_rep	five_prime_UTR	31612444	31613084	.	+	.	Parent=Os03t0764250-01
Chr03	irgsp1_rep	five_prime_UTR	31613202	31613281	.	+	.	Parent=Os03t0764250-01
Chr03	irgsp1_rep	five_prime_UTR	31613363	31613572	.	+	.	Parent=Os03t0764250-01
Chr03	irgsp1_rep	five_prime_UTR	31613814	31613933	.	+	.	Parent=Os03t0764250-01
Chr03	irgsp1_rep	five_prime_UTR	31614573	31614632	.	+	.	Parent=Os03t0764250-01
Chr03	irgsp1_rep	five_prime_UTR	31615919	31615994	.	+	.	Parent=Os03t0764250-01
Chr03	irgsp1_rep	five_prime_UTR	31616417	31616580	.	+	.	Parent=Os03t0764250-01
Chr03	irgsp1_rep	five_prime_UTR	31616661	31616723	.	+	.	Parent=Os03t0764250-01
Chr03	irgsp1_rep	five_prime_UTR	31617047	31617134	.	+	.	Parent=Os03t0764250-01
Chr03	irgsp1_rep	five_prime_UTR	31617217	31617714	.	+	.	Parent=Os03t0764250-01
Chr03	irgsp1_rep	CDS	31617715	31617867	.	+	0	Parent=Os03t0764250-01
Chr03	irgsp1_rep	CDS	31618741	31619358	.	+	0	Parent=Os03t0764250-01
Chr03	irgsp1_rep	three_prime_UTR	31619359	31619518	.	+	.	Parent=Os03t0764250-01
Chr03	irgsp1_rep	mRNA	31612448	31619532	.	-	.	ID=Os03t0764300-01;Name=Os03t0764300-01;Locus_id=Os03g0764300;CGSNL Gene Symbol=MAPKKK18;CGSNL Gene Name=MAPK KINASE KINASE 18;Oryzabase Gene Symbol Synonym(s)=OsMAPKKK18;Oryzabase Gene Name Synonym(s)=MAPK kinase kinase 18;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK068541 (DDBJ%2C Best hit),AK103184 (DDBJ%2C Best hit);ORF_evidence=B6SVE4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013155F15,J033121K03;Oryzabase=21699;TENOR=Os03t0764300-01
Chr03	irgsp1_rep	five_prime_UTR	31619310	31619532	.	-	.	Parent=Os03t0764300-01
Chr03	irgsp1_rep	CDS	31618741	31619309	.	-	0	Parent=Os03t0764300-01
Chr03	irgsp1_rep	CDS	31617217	31617867	.	-	1	Parent=Os03t0764300-01
Chr03	irgsp1_rep	CDS	31617047	31617134	.	-	1	Parent=Os03t0764300-01
Chr03	irgsp1_rep	CDS	31616661	31616723	.	-	0	Parent=Os03t0764300-01
Chr03	irgsp1_rep	CDS	31616417	31616580	.	-	0	Parent=Os03t0764300-01
Chr03	irgsp1_rep	CDS	31615919	31615994	.	-	1	Parent=Os03t0764300-01
Chr03	irgsp1_rep	CDS	31614573	31614632	.	-	0	Parent=Os03t0764300-01
Chr03	irgsp1_rep	CDS	31613814	31613933	.	-	0	Parent=Os03t0764300-01
Chr03	irgsp1_rep	CDS	31613363	31613572	.	-	0	Parent=Os03t0764300-01
Chr03	irgsp1_rep	CDS	31613202	31613281	.	-	0	Parent=Os03t0764300-01
Chr03	irgsp1_rep	CDS	31612832	31613084	.	-	1	Parent=Os03t0764300-01
Chr03	irgsp1_rep	three_prime_UTR	31612448	31612831	.	-	.	Parent=Os03t0764300-01
Chr03	irgsp1_rep	mRNA	31615367	31619463	.	-	.	ID=Os03t0764300-02;Name=Os03t0764300-02;Locus_id=Os03g0764300;CGSNL Gene Symbol=MAPKKK18;CGSNL Gene Name=MAPK KINASE KINASE 18;Oryzabase Gene Symbol Synonym(s)=OsMAPKKK18;Oryzabase Gene Name Synonym(s)=MAPK kinase kinase 18;Note=Hypothetical conserved gene.;Transcript_evidence=AK106496 (DDBJ%2C Best hit);ORF_evidence=B6SVE4 (UniProt);NIAS_FLcDNA=002-105-D09;Oryzabase=21699;Expression=AK106496;TENOR=Os03t0764300-02;KEGG=Os03t0764300-02
Chr03	irgsp1_rep	five_prime_UTR	31619310	31619463	.	-	.	Parent=Os03t0764300-02
Chr03	irgsp1_rep	CDS	31618741	31619309	.	-	0	Parent=Os03t0764300-02
Chr03	irgsp1_rep	CDS	31617162	31617867	.	-	1	Parent=Os03t0764300-02
Chr03	irgsp1_rep	three_prime_UTR	31616168	31617161	.	-	.	Parent=Os03t0764300-02
Chr03	irgsp1_rep	three_prime_UTR	31615367	31615567	.	-	.	Parent=Os03t0764300-02
Chr03	irgsp1_rep	mRNA	31622649	31630078	.	+	.	ID=Os03t0764450-00;Name=Os03t0764450-00;Locus_id=Os03g0764450;CGSNL Gene Symbol=DLN101;CGSNL Gene Name=DLN REPRESSOR 101;Oryzabase Gene Symbol Synonym(s)=OsDLN101;Oryzabase Gene Name Synonym(s)=DLN repressor 101%2C DLN motif protein 101;Note=Similar to SWIB/MDM2 domain containing protein.;Transcript_evidence=EU955355 (DDBJ);ORF_evidence=B6SRJ0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=SWIB/MDM2 domain (IPR003121),SWIB domain (IPR019835);Oryzabase=23188;TENOR=Os03t0764450-00;KEGG=Os03t0764450-00
Chr03	irgsp1_rep	CDS	31622649	31623441	.	+	0	Parent=Os03t0764450-00
Chr03	irgsp1_rep	CDS	31625655	31625758	.	+	2	Parent=Os03t0764450-00
Chr03	irgsp1_rep	CDS	31625889	31626060	.	+	0	Parent=Os03t0764450-00
Chr03	irgsp1_rep	CDS	31627550	31627621	.	+	2	Parent=Os03t0764450-00
Chr03	irgsp1_rep	CDS	31627700	31627863	.	+	2	Parent=Os03t0764450-00
Chr03	irgsp1_rep	CDS	31629812	31629934	.	+	0	Parent=Os03t0764450-00
Chr03	irgsp1_rep	three_prime_UTR	31629935	31630078	.	+	.	Parent=Os03t0764450-00
Chr03	irgsp1_rep	mRNA	31626061	31626496	.	+	.	ID=Os03t0764500-01;Name=Os03t0764500-01;Locus_id=Os03g0764500;Note=Conserved hypothetical protein.;Transcript_evidence=AK120443 (DDBJ%2C Best hit);ORF_evidence=Q8W5G1 (UniProt);NIAS_FLcDNA=J013099D11;Expression=AK120443;TENOR=Os03t0764500-01;KEGG=Os03t0764500-01
Chr03	irgsp1_rep	five_prime_UTR	31626061	31626310	.	+	.	Parent=Os03t0764500-01
Chr03	irgsp1_rep	CDS	31626311	31626466	.	+	0	Parent=Os03t0764500-01
Chr03	irgsp1_rep	three_prime_UTR	31626467	31626496	.	+	.	Parent=Os03t0764500-01
Chr03	irgsp1_rep	mRNA	31630194	31630884	.	+	.	ID=Os03t0764550-01;Name=Os03t0764550-01;Locus_id=Os03g0764550;Note=Hypothetical gene.;Transcript_evidence=AK288256 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J090015N12;TENOR=Os03t0764550-01;KEGG=Os03t0764550-01
Chr03	irgsp1_rep	five_prime_UTR	31630194	31630194	.	+	.	Parent=Os03t0764550-01
Chr03	irgsp1_rep	CDS	31630195	31630407	.	+	0	Parent=Os03t0764550-01
Chr03	irgsp1_rep	three_prime_UTR	31630408	31630884	.	+	.	Parent=Os03t0764550-01
Chr03	irgsp1_rep	mRNA	31643909	31645862	.	+	.	ID=Os03t0764600-01;Name=Os03t0764600-01;Locus_id=Os03g0764600;Note=Homeodomain-like containing protein.;Transcript_evidence=AK105625 (DDBJ%2C Best hit);ORF_evidence=NP_001149103.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=001-200-C11;Expression=AK105625;TENOR=Os03t0764600-01;KEGG=Os03t0764600-01
Chr03	irgsp1_rep	five_prime_UTR	31643909	31644048	.	+	.	Parent=Os03t0764600-01
Chr03	irgsp1_rep	CDS	31644049	31644259	.	+	0	Parent=Os03t0764600-01
Chr03	irgsp1_rep	CDS	31644361	31644506	.	+	2	Parent=Os03t0764600-01
Chr03	irgsp1_rep	CDS	31644634	31645021	.	+	0	Parent=Os03t0764600-01
Chr03	irgsp1_rep	CDS	31645114	31645190	.	+	2	Parent=Os03t0764600-01
Chr03	irgsp1_rep	CDS	31645329	31645553	.	+	0	Parent=Os03t0764600-01
Chr03	irgsp1_rep	three_prime_UTR	31645554	31645862	.	+	.	Parent=Os03t0764600-01
Chr03	irgsp1_rep	mRNA	31652794	31658094	.	+	.	ID=Os03t0764800-01;Name=Os03t0764800-01;Locus_id=Os03g0764800;RAP-DB Gene Symbol Synonym(s)=SAPK8%2C OsSAPK8;RAP-DB Gene Name Synonym(s)=STRESS/ABA-ACTIVATED PROTEIN KINASE 8%2C stress/ABA-activated protein kinase 8%2C Stress-Activated Protein Kinase 8;CGSNL Gene Symbol=SAPK8;CGSNL Gene Name=STRESS/ABA-ACTIVATED PROTEIN KINASE 8;Oryzabase Gene Symbol Synonym(s)=OsSAPK8;Oryzabase Gene Name Synonym(s)=stress/ABA-activated protein kinase 8%2C Stress-Activated Protein Kinase 8;Note=Serine/threonine protein kinase%2C Abscisic acid (ABA)-activated protein kinase%2C Hyperosmotic stress response%2C ABA signal transduction;Transcript_evidence=AB125309;ORF_evidence=Q7Y0B9;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine/threonine/dual specificity protein kinase%2C catalytic  domain (IPR002290),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);Manual Curation=December 10%2C 2015;Literature_PMID=16359387,15084714;Oryzabase=9816;TENOR=Os03t0764800-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	31652794	31652892	.	+	.	Parent=Os03t0764800-01
Chr03	irgsp1_rep	CDS	31652893	31653099	.	+	0	Parent=Os03t0764800-01
Chr03	irgsp1_rep	CDS	31654785	31654859	.	+	0	Parent=Os03t0764800-01
Chr03	irgsp1_rep	CDS	31654947	31655048	.	+	0	Parent=Os03t0764800-01
Chr03	irgsp1_rep	CDS	31655146	31655199	.	+	0	Parent=Os03t0764800-01
Chr03	irgsp1_rep	CDS	31655295	31655387	.	+	0	Parent=Os03t0764800-01
Chr03	irgsp1_rep	CDS	31655631	31655723	.	+	0	Parent=Os03t0764800-01
Chr03	irgsp1_rep	CDS	31656414	31656518	.	+	0	Parent=Os03t0764800-01
Chr03	irgsp1_rep	CDS	31656624	31656722	.	+	0	Parent=Os03t0764800-01
Chr03	irgsp1_rep	CDS	31657572	31657859	.	+	0	Parent=Os03t0764800-01
Chr03	irgsp1_rep	three_prime_UTR	31657860	31658094	.	+	.	Parent=Os03t0764800-01
Chr03	irgsp1_rep	mRNA	31662332	31663957	.	-	.	ID=Os03t0764900-01;Name=Os03t0764900-01;Locus_id=Os03g0764900;RAP-DB Gene Symbol Synonym(s)=OsDOF15%2C SP3;RAP-DB Gene Name Synonym(s)=DOF transcription factor 15%2C Short Panicle 3;CGSNL Gene Symbol=SP3;CGSNL Gene Name=SHORT PANICLE 3;Oryzabase Gene Symbol Synonym(s)=OsDof15%2C Dof15%2C OsDof-15%2C DOF15;Oryzabase Gene Name Synonym(s)=Dof zinc factor 15%2C Dof transcription factor 15%2C DNA BINDING WITH ONE FINGER 15%2C Short Panicle 3;Note=DOF transcription factor%2C Regulation of primary root elongation%2C Control of ethylene biosynthesis%2C Regulation of cell proliferation in root meristem%2C Salt stress response%2C Regulation of panicle architecture%2C Modulation of cytokinin homeostasis;Transcript_evidence=AK063380;ORF_evidence=Q10EQ1;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Zinc finger%2C Dof-type (IPR003851);NIAS_FLcDNA=001-114-F11;Manual Curation=May 16%2C 2019;Literature_PMID=30924949,30302902;Oryzabase=8805;Expression=AK063380;TENOR=Os03t0764900-01;KEGG=Os03t0764900-01;Subcellular location=nucleus (GO:0005634)
Chr03	irgsp1_rep	five_prime_UTR	31663806	31663957	.	-	.	Parent=Os03t0764900-01
Chr03	irgsp1_rep	CDS	31662726	31663805	.	-	0	Parent=Os03t0764900-01
Chr03	irgsp1_rep	three_prime_UTR	31662332	31662725	.	-	.	Parent=Os03t0764900-01
Chr03	irgsp1_rep	mRNA	31674593	31678718	.	+	.	ID=Os03t0765000-01;Name=Os03t0765000-01;Locus_id=Os03g0765000;Note=Similar to Serine/threonine-protein kinase 12 (EC 2.7.1.37) (Aurora-B) (Fragment).;Transcript_evidence=AK073918 (DDBJ%2C Best hit);ORF_evidence=B6SI45 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033074N13;Expression=AK073918;TENOR=Os03t0765000-01;KEGG=Os03t0765000-01 (EC:2.7.1.37%2C EC:2.7.11.1)
Chr03	irgsp1_rep	five_prime_UTR	31674593	31674778	.	+	.	Parent=Os03t0765000-01
Chr03	irgsp1_rep	CDS	31674779	31674874	.	+	0	Parent=Os03t0765000-01
Chr03	irgsp1_rep	CDS	31674988	31675230	.	+	0	Parent=Os03t0765000-01
Chr03	irgsp1_rep	CDS	31675893	31675988	.	+	0	Parent=Os03t0765000-01
Chr03	irgsp1_rep	CDS	31676837	31677051	.	+	0	Parent=Os03t0765000-01
Chr03	irgsp1_rep	CDS	31677133	31677412	.	+	1	Parent=Os03t0765000-01
Chr03	irgsp1_rep	three_prime_UTR	31677413	31678718	.	+	.	Parent=Os03t0765000-01
Chr03	irgsp1_rep	mRNA	31674694	31677409	.	-	.	ID=Os03t0765050-00;Name=Os03t0765050-00;Locus_id=Os03g0765050;Note=Non-protein coding transcript.;Transcript_evidence=BT019247 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0765050-00
Chr03	irgsp1_rep	exon	31677294	31677409	.	-	.	Parent=Os03t0765050-00
Chr03	irgsp1_rep	exon	31677126	31677203	.	-	.	Parent=Os03t0765050-00
Chr03	irgsp1_rep	exon	31676822	31677044	.	-	.	Parent=Os03t0765050-00
Chr03	irgsp1_rep	exon	31675878	31675973	.	-	.	Parent=Os03t0765050-00
Chr03	irgsp1_rep	exon	31674997	31675222	.	-	.	Parent=Os03t0765050-00
Chr03	irgsp1_rep	exon	31674694	31674879	.	-	.	Parent=Os03t0765050-00
Chr03	irgsp1_rep	mRNA	31680942	31681754	.	+	.	ID=Os03t0765100-01;Name=Os03t0765100-01;Locus_id=Os03g0765100;Note=Conserved hypothetical protein.;Transcript_evidence=AK062731 (DDBJ%2C Best hit);ORF_evidence=Q7Y0C7 (UniProt);NIAS_FLcDNA=001-106-E05;Expression=AK062731;TENOR=Os03t0765100-01;KEGG=Os03t0765100-01
Chr03	irgsp1_rep	five_prime_UTR	31680942	31680942	.	+	.	Parent=Os03t0765100-01
Chr03	irgsp1_rep	CDS	31680943	31681608	.	+	0	Parent=Os03t0765100-01
Chr03	irgsp1_rep	three_prime_UTR	31681609	31681754	.	+	.	Parent=Os03t0765100-01
Chr03	irgsp1_rep	mRNA	31683539	31685051	.	-	.	ID=Os03t0765200-01;Name=Os03t0765200-01;Locus_id=Os03g0765200;Oryzabase Gene Symbol Synonym(s)=OsSigP2%2C SIGP2;Oryzabase Gene Name Synonym(s)=Type I Signal Peptidase 2%2C TYPE I SIGNAL PEPTIDASE 2;Note=Similar to Signal peptidase I family protein%2C expressed.;Transcript_evidence=AK058692 (DDBJ%2C Best hit);ORF_evidence=Q10EP0 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021),Molecular Function: serine-type peptidase activity (GO:0008236);InterPro=Peptidase S24/S26A/S26B/S26C%2C beta-ribbon domain (IPR011056),Peptidase S24/S26A/S26B/S26C (IPR015927),Peptidase S26A%2C signal peptidase I%2C serine active site (IPR019756);NIAS_FLcDNA=001-019-B05;Oryzabase=20043;Expression=AK058692;TENOR=Os03t0765200-01;KEGG=Os03t0765200-01 (EC:3.4.21.89)
Chr03	irgsp1_rep	five_prime_UTR	31684714	31685051	.	-	.	Parent=Os03t0765200-01
Chr03	irgsp1_rep	CDS	31683652	31684713	.	-	0	Parent=Os03t0765200-01
Chr03	irgsp1_rep	three_prime_UTR	31683539	31683651	.	-	.	Parent=Os03t0765200-01
Chr03	irgsp1_rep	mRNA	31682120	31685009	.	-	.	ID=Os03t0765200-02;Name=Os03t0765200-02;Locus_id=Os03g0765200;Oryzabase Gene Symbol Synonym(s)=OsSigP2%2C SIGP2;Oryzabase Gene Name Synonym(s)=Type I Signal Peptidase 2%2C TYPE I SIGNAL PEPTIDASE 2;Note=Similar to Signal peptidase I (Leader peptidase I).;Transcript_evidence=AK069581 (DDBJ%2C Best hit);ORF_evidence=Q10EP0 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: serine-type peptidase activity (GO:0008236);InterPro=Peptidase S26A%2C signal peptidase I (IPR000223),Peptidase S24/S26A/S26B/S26C%2C beta-ribbon domain (IPR011056),Peptidase S24/S26A/S26B/S26C (IPR015927),Peptidase S26 (IPR019533),Peptidase S26A%2C signal peptidase I%2C serine active site (IPR019756),Peptidase S26A%2C signal peptidase I%2C lysine active site (IPR019757),Peptidase S26A%2C signal peptidase I%2C conserved site (IPR019758);NIAS_FLcDNA=J023021P11;Oryzabase=20043;Expression=AK069581;TENOR=Os03t0765200-02;KEGG=Os03t0765200-02 (EC:3.4.21.89)
Chr03	irgsp1_rep	five_prime_UTR	31684714	31685009	.	-	.	Parent=Os03t0765200-02
Chr03	irgsp1_rep	CDS	31683676	31684713	.	-	0	Parent=Os03t0765200-02
Chr03	irgsp1_rep	CDS	31683524	31683592	.	-	0	Parent=Os03t0765200-02
Chr03	irgsp1_rep	CDS	31683375	31683443	.	-	0	Parent=Os03t0765200-02
Chr03	irgsp1_rep	CDS	31683169	31683255	.	-	0	Parent=Os03t0765200-02
Chr03	irgsp1_rep	CDS	31682795	31682862	.	-	0	Parent=Os03t0765200-02
Chr03	irgsp1_rep	CDS	31682623	31682704	.	-	1	Parent=Os03t0765200-02
Chr03	irgsp1_rep	three_prime_UTR	31682120	31682622	.	-	.	Parent=Os03t0765200-02
Chr03	irgsp1_rep	mRNA	31690975	31696827	.	-	.	ID=Os03t0765400-01;Name=Os03t0765400-01;Locus_id=Os03g0765400;Note=Similar to nucleoporin p58/p45.;Transcript_evidence=AK100035 (DDBJ%2C Best hit);ORF_evidence=NP_001149260.1 (RefSeq);NIAS_FLcDNA=J013150H13;TENOR=Os03t0765400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	31696506	31696827	.	-	.	Parent=Os03t0765400-01
Chr03	irgsp1_rep	five_prime_UTR	31695475	31695548	.	-	.	Parent=Os03t0765400-01
Chr03	irgsp1_rep	five_prime_UTR	31694928	31695371	.	-	.	Parent=Os03t0765400-01
Chr03	irgsp1_rep	CDS	31694920	31694927	.	-	0	Parent=Os03t0765400-01
Chr03	irgsp1_rep	CDS	31692974	31693088	.	-	1	Parent=Os03t0765400-01
Chr03	irgsp1_rep	CDS	31691976	31692425	.	-	0	Parent=Os03t0765400-01
Chr03	irgsp1_rep	CDS	31691178	31691645	.	-	0	Parent=Os03t0765400-01
Chr03	irgsp1_rep	three_prime_UTR	31690975	31691177	.	-	.	Parent=Os03t0765400-01
Chr03	irgsp1_rep	mRNA	31694728	31696825	.	-	.	ID=Os03t0765400-02;Name=Os03t0765400-02;Locus_id=Os03g0765400;Note=Conserved hypothetical protein.;Transcript_evidence=AK065267 (DDBJ%2C Best hit);ORF_evidence=B8AKI6 (UniProt);NIAS_FLcDNA=J013002K20;Expression=AK065267;TENOR=Os03t0765400-02;KEGG=Os03t0765400-02
Chr03	irgsp1_rep	five_prime_UTR	31696759	31696825	.	-	.	Parent=Os03t0765400-02
Chr03	irgsp1_rep	CDS	31696506	31696758	.	-	0	Parent=Os03t0765400-02
Chr03	irgsp1_rep	CDS	31695475	31695548	.	-	2	Parent=Os03t0765400-02
Chr03	irgsp1_rep	CDS	31695048	31695371	.	-	0	Parent=Os03t0765400-02
Chr03	irgsp1_rep	three_prime_UTR	31694728	31695047	.	-	.	Parent=Os03t0765400-02
Chr03	irgsp1_rep	mRNA	31697683	31698949	.	-	.	ID=Os03t0765500-00;Name=Os03t0765500-00;Locus_id=Os03g0765500;Note=Hypothetical conserved gene.;Transcript_evidence=CT835163 (DDBJ%2C Best hit);ORF_evidence=Q7Y0B8 (UniProt);TENOR=Os03t0765500-00;KEGG=Os03t0765500-00
Chr03	irgsp1_rep	five_prime_UTR	31698888	31698949	.	-	.	Parent=Os03t0765500-00
Chr03	irgsp1_rep	CDS	31698665	31698887	.	-	0	Parent=Os03t0765500-00
Chr03	irgsp1_rep	CDS	31698155	31698228	.	-	2	Parent=Os03t0765500-00
Chr03	irgsp1_rep	CDS	31697761	31698039	.	-	0	Parent=Os03t0765500-00
Chr03	irgsp1_rep	three_prime_UTR	31697683	31697760	.	-	.	Parent=Os03t0765500-00
Chr03	irgsp1_rep	mRNA	31718262	31721710	.	+	.	ID=Os03t0765800-00;Name=Os03t0765800-00;Locus_id=Os03g0765800;Note=Pyridoxal phosphate-dependent transferase%2C major region domain containing protein.;Transcript_evidence=AK367148 (DDBJ);ORF_evidence=NP_201496.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);TENOR=Os03t0765800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	31718262	31718532	.	+	.	Parent=Os03t0765800-00
Chr03	irgsp1_rep	CDS	31718533	31721340	.	+	0	Parent=Os03t0765800-00
Chr03	irgsp1_rep	three_prime_UTR	31721341	31721710	.	+	.	Parent=Os03t0765800-00
Chr03	irgsp1_rep	mRNA	31725194	31725857	.	+	.	ID=Os03t0765900-01;Name=Os03t0765900-01;Locus_id=Os03g0765900;Oryzabase Gene Name Synonym(s)=CytoChrome b6f subunit 7;Note=PetM of cytoChrome b6/f complex subunit 7 domain containing protein.;Transcript_evidence=AK058858 (DDBJ%2C Best hit);ORF_evidence=NP_001147411.1 (RefSeq);GO=Cellular Component: cytoChrome b6f complex (GO:0009512);InterPro=PetM of cytoChrome b6/f complex subunit 7 (IPR012595);NIAS_FLcDNA=001-005-E04;Oryzabase=12442;Expression=AK058858;TENOR=Os03t0765900-01;KEGG=Os03t0765900-01
Chr03	irgsp1_rep	five_prime_UTR	31725194	31725241	.	+	.	Parent=Os03t0765900-01
Chr03	irgsp1_rep	five_prime_UTR	31725325	31725326	.	+	.	Parent=Os03t0765900-01
Chr03	irgsp1_rep	CDS	31725327	31725683	.	+	0	Parent=Os03t0765900-01
Chr03	irgsp1_rep	three_prime_UTR	31725684	31725857	.	+	.	Parent=Os03t0765900-01
Chr03	irgsp1_rep	mRNA	31726005	31732261	.	-	.	ID=Os03t0766000-01;Name=Os03t0766000-01;Locus_id=Os03g0766000;Note=Similar to seven transmembrane domain protein.;Transcript_evidence=AK070596 (DDBJ%2C Best hit),AK104743 (DDBJ%2C Best hit),AK106079 (DDBJ%2C Best hit);ORF_evidence=NP_001147233.1 (RefSeq);InterPro=Protein of unknown function DUF2053%2C membrane (IPR019164);NIAS_FLcDNA=J023056A03,001-038-E03,001-207-A06;TENOR=Os03t0766000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	31732152	31732261	.	-	.	Parent=Os03t0766000-01
Chr03	irgsp1_rep	CDS	31732075	31732151	.	-	0	Parent=Os03t0766000-01
Chr03	irgsp1_rep	CDS	31729026	31729095	.	-	1	Parent=Os03t0766000-01
Chr03	irgsp1_rep	CDS	31728404	31728463	.	-	0	Parent=Os03t0766000-01
Chr03	irgsp1_rep	CDS	31728204	31728318	.	-	0	Parent=Os03t0766000-01
Chr03	irgsp1_rep	CDS	31727494	31727609	.	-	2	Parent=Os03t0766000-01
Chr03	irgsp1_rep	CDS	31727178	31727302	.	-	0	Parent=Os03t0766000-01
Chr03	irgsp1_rep	CDS	31726333	31726453	.	-	1	Parent=Os03t0766000-01
Chr03	irgsp1_rep	three_prime_UTR	31726005	31726332	.	-	.	Parent=Os03t0766000-01
Chr03	irgsp1_rep	mRNA	31729638	31730211	.	-	.	ID=Os03t0766100-01;Name=Os03t0766100-01;Locus_id=Os03g0766100;Oryzabase Gene Symbol Synonym(s)=Prol-01%2C CysR10%2C crP10%2C pro10.1;Oryzabase Gene Name Synonym(s)=10kDa prolamin%2C sulfur-rich 10 kDa prolamin%2C 10 kDa sulfurrich prolamin%2C cysteine-rich 10kDa prolamin%2C Cys-rich 10-kDa prolamin;Note=10 kDa prolamin precursor.;Transcript_evidence=AK108254 (DDBJ%2C Best hit),AK241987 (DDBJ%2C Best hit);ORF_evidence=A2XMB2 (UniProt);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Bifunctional trypsin/alpha-amylase inhibitor (IPR013771),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=002-141-A03,J075098K21;Oryzabase=13734;Expression=AK108254;TENOR=Os03t0766100-01;KEGG=Os03t0766100-01
Chr03	irgsp1_rep	five_prime_UTR	31730145	31730211	.	-	.	Parent=Os03t0766100-01
Chr03	irgsp1_rep	CDS	31729740	31730144	.	-	0	Parent=Os03t0766100-01
Chr03	irgsp1_rep	three_prime_UTR	31729638	31729739	.	-	.	Parent=Os03t0766100-01
Chr03	irgsp1_rep	mRNA	31732515	31733057	.	-	.	ID=Os03t0766200-01;Name=Os03t0766200-01;Locus_id=Os03g0766200;Oryzabase Gene Symbol Synonym(s)=OsEnS-56%2C pro10.2;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 56;Note=Bifunctional inhibitor/plant lipid transfer protein/seed storage domain containing protein.;Transcript_evidence=AK241901 (DDBJ%2C Best hit);ORF_evidence=A2XMB2 (UniProt);InterPro=Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=J075023N08;Oryzabase=18380;TENOR=Os03t0766200-01;KEGG=Os03t0766200-01
Chr03	irgsp1_rep	five_prime_UTR	31733023	31733057	.	-	.	Parent=Os03t0766200-01
Chr03	irgsp1_rep	CDS	31732816	31733022	.	-	0	Parent=Os03t0766200-01
Chr03	irgsp1_rep	three_prime_UTR	31732515	31732815	.	-	.	Parent=Os03t0766200-01
Chr03	irgsp1_rep	mRNA	31735442	31736253	.	-	.	ID=Os03t0766350-01;Name=Os03t0766350-01;Locus_id=Os03g0766350;Oryzabase Gene Symbol Synonym(s)=Prol-02%2C pro10.3;Note=Bifunctional inhibitor/plant lipid transfer protein/seed storage domain containing protein.;Transcript_evidence=AK242216 (DDBJ%2C Best hit);ORF_evidence=A2XMB2 (UniProt);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Bifunctional trypsin/alpha-amylase inhibitor (IPR013771),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=J075172F09;Oryzabase=15137;TENOR=Os03t0766350-01;KEGG=Os03t0766350-01
Chr03	irgsp1_rep	five_prime_UTR	31736181	31736253	.	-	.	Parent=Os03t0766350-01
Chr03	irgsp1_rep	CDS	31735776	31736180	.	-	0	Parent=Os03t0766350-01
Chr03	irgsp1_rep	three_prime_UTR	31735442	31735775	.	-	.	Parent=Os03t0766350-01
Chr03	irgsp1_rep	mRNA	31749469	31755280	.	+	.	ID=Os03t0766500-01;Name=Os03t0766500-01;Locus_id=Os03g0766500;Oryzabase Gene Symbol Synonym(s)=OsKANADI4;Note=Similar to Two-component response regulator ARR1. Splice isoform 2.;Transcript_evidence=AK108408 (DDBJ%2C Best hit);ORF_evidence=NP_001119363.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778);NIAS_FLcDNA=002-142-G11;Oryzabase=11755;Expression=AK108408;TENOR=Os03t0766500-01;KEGG=Os03t0766500-01
Chr03	irgsp1_rep	five_prime_UTR	31749469	31749692	.	+	.	Parent=Os03t0766500-01
Chr03	irgsp1_rep	CDS	31749693	31750125	.	+	0	Parent=Os03t0766500-01
Chr03	irgsp1_rep	CDS	31750314	31750390	.	+	2	Parent=Os03t0766500-01
Chr03	irgsp1_rep	CDS	31750787	31750835	.	+	0	Parent=Os03t0766500-01
Chr03	irgsp1_rep	CDS	31751185	31751455	.	+	2	Parent=Os03t0766500-01
Chr03	irgsp1_rep	CDS	31754403	31754511	.	+	1	Parent=Os03t0766500-01
Chr03	irgsp1_rep	CDS	31754918	31755157	.	+	0	Parent=Os03t0766500-01
Chr03	irgsp1_rep	three_prime_UTR	31755158	31755280	.	+	.	Parent=Os03t0766500-01
Chr03	irgsp1_rep	mRNA	31755906	31756587	.	+	.	ID=Os03t0766600-01;Name=Os03t0766600-01;Locus_id=Os03g0766600;Note=Conserved hypothetical protein.;Transcript_evidence=AK063832 (DDBJ%2C Best hit),AK121417 (DDBJ%2C Best hit);ORF_evidence=A2XMB7 (UniProt);NIAS_FLcDNA=001-122-B04,J023133G21;Expression=AK063832;TENOR=Os03t0766600-01;KEGG=Os03t0766600-01
Chr03	irgsp1_rep	five_prime_UTR	31755906	31756007	.	+	.	Parent=Os03t0766600-01
Chr03	irgsp1_rep	CDS	31756008	31756262	.	+	0	Parent=Os03t0766600-01
Chr03	irgsp1_rep	three_prime_UTR	31756263	31756587	.	+	.	Parent=Os03t0766600-01
Chr03	irgsp1_rep	mRNA	31758042	31758599	.	+	.	ID=Os03t0766800-01;Name=Os03t0766800-01;Locus_id=Os03g0766800;Note=Conserved hypothetical protein.;Transcript_evidence=AK120228 (DDBJ%2C Best hit);ORF_evidence=B8AKI9 (UniProt);NIAS_FLcDNA=J013042P21;Expression=AK120228;TENOR=Os03t0766800-01;KEGG=Os03t0766800-01
Chr03	irgsp1_rep	five_prime_UTR	31758042	31758167	.	+	.	Parent=Os03t0766800-01
Chr03	irgsp1_rep	CDS	31758168	31758404	.	+	0	Parent=Os03t0766800-01
Chr03	irgsp1_rep	three_prime_UTR	31758405	31758599	.	+	.	Parent=Os03t0766800-01
Chr03	irgsp1_rep	mRNA	31759195	31762974	.	+	.	ID=Os03t0766900-01;Name=Os03t0766900-01;Locus_id=Os03g0766900;Note=Allene oxide synthase.;Transcript_evidence=AK103989 (DDBJ%2C Best hit),AK071361 (DDBJ%2C Best hit);ORF_evidence=B6TKL0 (UniProt);InterPro=Proteasome assembly chaperone 2%2C eukaryotic (IPR016562),Proteasome assembly chaperone 2 (IPR019151);NIAS_FLcDNA=001-018-B09,J023090K09;Expression=AK103989;TENOR=Os03t0766900-01;KEGG=Os03t0766900-01
Chr03	irgsp1_rep	five_prime_UTR	31759195	31759282	.	+	.	Parent=Os03t0766900-01
Chr03	irgsp1_rep	CDS	31759283	31759342	.	+	0	Parent=Os03t0766900-01
Chr03	irgsp1_rep	CDS	31759443	31759608	.	+	0	Parent=Os03t0766900-01
Chr03	irgsp1_rep	CDS	31759975	31760033	.	+	2	Parent=Os03t0766900-01
Chr03	irgsp1_rep	CDS	31760609	31760727	.	+	0	Parent=Os03t0766900-01
Chr03	irgsp1_rep	CDS	31760817	31761054	.	+	1	Parent=Os03t0766900-01
Chr03	irgsp1_rep	CDS	31761125	31761248	.	+	0	Parent=Os03t0766900-01
Chr03	irgsp1_rep	CDS	31761396	31761475	.	+	2	Parent=Os03t0766900-01
Chr03	irgsp1_rep	three_prime_UTR	31761476	31761492	.	+	.	Parent=Os03t0766900-01
Chr03	irgsp1_rep	three_prime_UTR	31762715	31762974	.	+	.	Parent=Os03t0766900-01
Chr03	irgsp1_rep	mRNA	31759195	31767544	.	+	.	ID=Os03t0766900-02;Name=Os03t0766900-02;Locus_id=Os03g0766900;Note=Allene oxide synthase.;Transcript_evidence=AK066137 (DDBJ%2C Best hit);ORF_evidence=B6TKL0 (UniProt);InterPro=Proteasome assembly chaperone 2%2C eukaryotic (IPR016562),Proteasome assembly chaperone 2 (IPR019151);NIAS_FLcDNA=J013054B10;Expression=AK066137;TENOR=Os03t0766900-02;KEGG=Os03t0766900-02
Chr03	irgsp1_rep	five_prime_UTR	31759195	31759282	.	+	.	Parent=Os03t0766900-02
Chr03	irgsp1_rep	CDS	31759283	31759342	.	+	0	Parent=Os03t0766900-02
Chr03	irgsp1_rep	CDS	31759443	31759608	.	+	0	Parent=Os03t0766900-02
Chr03	irgsp1_rep	CDS	31759975	31760033	.	+	2	Parent=Os03t0766900-02
Chr03	irgsp1_rep	CDS	31760609	31760727	.	+	0	Parent=Os03t0766900-02
Chr03	irgsp1_rep	CDS	31760817	31761054	.	+	1	Parent=Os03t0766900-02
Chr03	irgsp1_rep	CDS	31761125	31761248	.	+	0	Parent=Os03t0766900-02
Chr03	irgsp1_rep	CDS	31761396	31761475	.	+	2	Parent=Os03t0766900-02
Chr03	irgsp1_rep	three_prime_UTR	31761476	31761492	.	+	.	Parent=Os03t0766900-02
Chr03	irgsp1_rep	three_prime_UTR	31762715	31763281	.	+	.	Parent=Os03t0766900-02
Chr03	irgsp1_rep	three_prime_UTR	31763367	31763502	.	+	.	Parent=Os03t0766900-02
Chr03	irgsp1_rep	three_prime_UTR	31765172	31767005	.	+	.	Parent=Os03t0766900-02
Chr03	irgsp1_rep	three_prime_UTR	31767085	31767544	.	+	.	Parent=Os03t0766900-02
Chr03	irgsp1_rep	mRNA	31759271	31759685	.	-	.	ID=Os03t0766950-00;Name=Os03t0766950-00;Locus_id=Os03g0766950;Note=Non-protein coding transcript.;Transcript_evidence=AK361753 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0766950-00
Chr03	irgsp1_rep	exon	31759271	31759685	.	-	.	Parent=Os03t0766950-00
Chr03	irgsp1_rep	mRNA	31764991	31766985	.	-	.	ID=Os03t0767000-01;Name=Os03t0767000-01;Locus_id=Os03g0767000;RAP-DB Gene Symbol Synonym(s)=AOS1%2C OsAOS%2C OsAOS1%2C CYP74A1;RAP-DB Gene Name Synonym(s)=ALLENE OXIDE SYNTHASE 1%2C allene oxide synthase1%2C "Allene oxide synthase 1%2C chloroplastic"%2C CytoChrome P450 74A1%2C Hydroperoxide dehydrase 1%2C allene oxide synthase-1;CGSNL Gene Symbol=AOS1;CGSNL Gene Name=ALLENE OXIDE SYNTHASE 1;Oryzabase Gene Symbol Synonym(s)=OsAOS%2C OsAOS1%2C CYP74A1%2C OsAOS2%2C AOS2;Oryzabase Gene Name Synonym(s)=allene oxide synthase1%2C "Allene oxide synthase 1%2C chloroplastic"%2C CytoChrome P450 74A1%2C Hydroperoxide dehydrase 1%2C allene oxide synthase-1;Note=Allene oxide synthase (CYP74A1)%2C Biosynthesis of jasmonic acid (JA);Transcript_evidence=AB116527,AK068620;ORF_evidence=Q7Y0C8,Q10EK5;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: monooxygenase activity (GO:0004497),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group IV (IPR002403);NIAS_FLcDNA=J013153K19;Manual Curation=February 15%2C 2010;Literature_PMID=14988482;Oryzabase=3072;Expression=AK068620;TENOR=Os03t0767000-01;KEGG=Os03t0767000-01 (EC:4.2.1.92)
Chr03	irgsp1_rep	five_prime_UTR	31766771	31766985	.	-	.	Parent=Os03t0767000-01
Chr03	irgsp1_rep	CDS	31765232	31766770	.	-	0	Parent=Os03t0767000-01
Chr03	irgsp1_rep	three_prime_UTR	31764991	31765231	.	-	.	Parent=Os03t0767000-01
Chr03	irgsp1_rep	mRNA	31778339	31781372	.	-	.	ID=Os03t0767500-01;Name=Os03t0767500-01;Locus_id=Os03g0767500;Note=Thioredoxin domain 2 containing protein.;Transcript_evidence=AK073052 (DDBJ%2C Best hit),AK098932 (DDBJ%2C Best hit),AK104279 (DDBJ%2C Best hit);ORF_evidence=NP_001152226.1 (RefSeq);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Thioredoxin (IPR005746),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766);NIAS_FLcDNA=J033003G10,J013025I21,001-004-F07;TENOR=Os03t0767500-01
Chr03	irgsp1_rep	five_prime_UTR	31781311	31781372	.	-	.	Parent=Os03t0767500-01
Chr03	irgsp1_rep	CDS	31781128	31781310	.	-	0	Parent=Os03t0767500-01
Chr03	irgsp1_rep	CDS	31780555	31780773	.	-	0	Parent=Os03t0767500-01
Chr03	irgsp1_rep	CDS	31779709	31779812	.	-	0	Parent=Os03t0767500-01
Chr03	irgsp1_rep	CDS	31779052	31779334	.	-	1	Parent=Os03t0767500-01
Chr03	irgsp1_rep	three_prime_UTR	31779001	31779051	.	-	.	Parent=Os03t0767500-01
Chr03	irgsp1_rep	three_prime_UTR	31778339	31778683	.	-	.	Parent=Os03t0767500-01
Chr03	irgsp1_rep	mRNA	31785151	31788078	.	+	.	ID=Os03t0767600-01;Name=Os03t0767600-01;Locus_id=Os03g0767600;Note=BTB domain containing protein.;Transcript_evidence=AK111226 (DDBJ%2C Best hit);ORF_evidence=B8ANT7 (UniProt);GO=Biological Process: response to light stimulus (GO:0009416),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),NPH3 (IPR004249),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069);NIAS_FLcDNA=002-179-D09;Expression=AK111226;TENOR=Os03t0767600-01;KEGG=Os03t0767600-01
Chr03	irgsp1_rep	five_prime_UTR	31785151	31785413	.	+	.	Parent=Os03t0767600-01
Chr03	irgsp1_rep	CDS	31785414	31785528	.	+	0	Parent=Os03t0767600-01
Chr03	irgsp1_rep	CDS	31785621	31785691	.	+	2	Parent=Os03t0767600-01
Chr03	irgsp1_rep	CDS	31785951	31787273	.	+	0	Parent=Os03t0767600-01
Chr03	irgsp1_rep	CDS	31787358	31787900	.	+	0	Parent=Os03t0767600-01
Chr03	irgsp1_rep	three_prime_UTR	31787901	31788078	.	+	.	Parent=Os03t0767600-01
Chr03	irgsp1_rep	mRNA	31786091	31787567	.	-	.	ID=Os03t0767650-00;Name=Os03t0767650-00;Locus_id=Os03g0767650;Note=Hypothetical gene.;Transcript_evidence=BT060652 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0767650-00;KEGG=Os03t0767650-00
Chr03	irgsp1_rep	five_prime_UTR	31786646	31787567	.	-	.	Parent=Os03t0767650-00
Chr03	irgsp1_rep	CDS	31786175	31786645	.	-	0	Parent=Os03t0767650-00
Chr03	irgsp1_rep	three_prime_UTR	31786091	31786174	.	-	.	Parent=Os03t0767650-00
Chr03	irgsp1_rep	mRNA	31788086	31789204	.	-	.	ID=Os03t0767700-01;Name=Os03t0767700-01;Locus_id=Os03g0767700;Note=Conserved hypothetical protein.;Transcript_evidence=AK073586 (DDBJ%2C Best hit);ORF_evidence=A2XCN8 (UniProt);NIAS_FLcDNA=J033050D05;Expression=AK073586;TENOR=Os03t0767700-01;KEGG=Os03t0767700-01
Chr03	irgsp1_rep	five_prime_UTR	31789110	31789204	.	-	.	Parent=Os03t0767700-01
Chr03	irgsp1_rep	CDS	31788219	31789109	.	-	0	Parent=Os03t0767700-01
Chr03	irgsp1_rep	three_prime_UTR	31788086	31788218	.	-	.	Parent=Os03t0767700-01
Chr03	irgsp1_rep	mRNA	31790621	31793184	.	+	.	ID=Os03t0767800-01;Name=Os03t0767800-01;Locus_id=Os03g0767800;Oryzabase Gene Symbol Synonym(s)=Oscor413-pm1;Oryzabase Gene Name Synonym(s)=COR413-plasma membrane group multispanning transmembrane protein 1%2C cold-regulated 413-plasma membrane group multispanning transmembrane protein 1;Note=Cold acclimation WCOR413 family protein.;Transcript_evidence=AK060000 (DDBJ%2C Best hit),AK066036 (DDBJ%2C Best hit);ORF_evidence=B6TKG9 (UniProt);InterPro=Cold acclimation WCOR413 (IPR008892);NIAS_FLcDNA=006-301-G09,J013049B03;Oryzabase=13969;Expression=AK060000;TENOR=Os03t0767800-01;KEGG=Os03t0767800-01
Chr03	irgsp1_rep	five_prime_UTR	31790621	31790769	.	+	.	Parent=Os03t0767800-01
Chr03	irgsp1_rep	CDS	31790770	31790969	.	+	0	Parent=Os03t0767800-01
Chr03	irgsp1_rep	CDS	31791987	31792094	.	+	1	Parent=Os03t0767800-01
Chr03	irgsp1_rep	CDS	31792491	31792561	.	+	1	Parent=Os03t0767800-01
Chr03	irgsp1_rep	CDS	31792654	31792907	.	+	2	Parent=Os03t0767800-01
Chr03	irgsp1_rep	three_prime_UTR	31792908	31793184	.	+	.	Parent=Os03t0767800-01
Chr03	irgsp1_rep	mRNA	31790667	31793202	.	+	.	ID=Os03t0767800-02;Name=Os03t0767800-02;Locus_id=Os03g0767800;Oryzabase Gene Symbol Synonym(s)=Oscor413-pm1;Oryzabase Gene Name Synonym(s)=COR413-plasma membrane group multispanning transmembrane protein 1%2C cold-regulated 413-plasma membrane group multispanning transmembrane protein 1;Note=Cold acclimation WCOR413 family protein.;Transcript_evidence=AK060906 (DDBJ%2C Best hit);ORF_evidence=B6TKG9 (UniProt);InterPro=Cold acclimation WCOR413 (IPR008892);NIAS_FLcDNA=001-035-F05;Oryzabase=13969;Expression=AK060906;TENOR=Os03t0767800-02;KEGG=Os03t0767800-02
Chr03	irgsp1_rep	five_prime_UTR	31790667	31790769	.	+	.	Parent=Os03t0767800-02
Chr03	irgsp1_rep	CDS	31790770	31790969	.	+	0	Parent=Os03t0767800-02
Chr03	irgsp1_rep	CDS	31791987	31792094	.	+	1	Parent=Os03t0767800-02
Chr03	irgsp1_rep	CDS	31792491	31792561	.	+	1	Parent=Os03t0767800-02
Chr03	irgsp1_rep	CDS	31792654	31792907	.	+	2	Parent=Os03t0767800-02
Chr03	irgsp1_rep	three_prime_UTR	31792908	31793202	.	+	.	Parent=Os03t0767800-02
Chr03	irgsp1_rep	mRNA	31802310	31804146	.	+	.	ID=Os03t0767900-01;Name=Os03t0767900-01;Locus_id=Os03g0767900;Note=Uncharacterised protein family UPF0497%2C trans-membrane plant domain containing protein.;Transcript_evidence=AK106933 (DDBJ%2C Best hit);ORF_evidence=B8BPI2 (UniProt);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);NIAS_FLcDNA=002-119-C05;Expression=AK106933;TENOR=Os03t0767900-01;KEGG=Os03t0767900-01
Chr03	irgsp1_rep	five_prime_UTR	31802310	31803071	.	+	.	Parent=Os03t0767900-01
Chr03	irgsp1_rep	CDS	31803072	31803214	.	+	0	Parent=Os03t0767900-01
Chr03	irgsp1_rep	CDS	31803518	31803650	.	+	1	Parent=Os03t0767900-01
Chr03	irgsp1_rep	CDS	31803759	31803953	.	+	0	Parent=Os03t0767900-01
Chr03	irgsp1_rep	three_prime_UTR	31803954	31804146	.	+	.	Parent=Os03t0767900-01
Chr03	irgsp1_rep	mRNA	31817608	31817993	.	+	.	ID=Os03t0768450-00;Name=Os03t0768450-00;Locus_id=Os03g0768450;Note=Hypothetical conserved gene.;Transcript_evidence=EU973448 (DDBJ);ORF_evidence=B6U883 (UniProt);TENOR=Os03t0768450-00;KEGG=Os03t0768450-00
Chr03	irgsp1_rep	five_prime_UTR	31817608	31817771	.	+	.	Parent=Os03t0768450-00
Chr03	irgsp1_rep	CDS	31817772	31817993	.	+	0	Parent=Os03t0768450-00
Chr03	irgsp1_rep	mRNA	31824161	31824936	.	+	.	ID=Os03t0768900-00;Name=Os03t0768900-00;Locus_id=Os03g0768900;Note=Hypothetical conserved gene.;Transcript_evidence=AK372735 (DDBJ);ORF_evidence=B8BPI3 (UniProt);TENOR=Os03t0768900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	31824161	31824164	.	+	.	Parent=Os03t0768900-00
Chr03	irgsp1_rep	CDS	31824165	31824695	.	+	0	Parent=Os03t0768900-00
Chr03	irgsp1_rep	three_prime_UTR	31824696	31824936	.	+	.	Parent=Os03t0768900-00
Chr03	irgsp1_rep	mRNA	31825518	31829665	.	-	.	ID=Os03t0769000-00;Name=Os03t0769000-00;Locus_id=Os03g0769000;Note=Similar to ternary complex factor MIP1.;Transcript_evidence=BT042022 (DDBJ);ORF_evidence=NP_001152436.1 (RefSeq);InterPro=Domain of unknown function DUF547 (IPR006869);TENOR=Os03t0769000-00;KEGG=Os03t0769000-00
Chr03	irgsp1_rep	five_prime_UTR	31829326	31829665	.	-	.	Parent=Os03t0769000-00
Chr03	irgsp1_rep	CDS	31829174	31829325	.	-	0	Parent=Os03t0769000-00
Chr03	irgsp1_rep	CDS	31829016	31829085	.	-	1	Parent=Os03t0769000-00
Chr03	irgsp1_rep	CDS	31828803	31828886	.	-	0	Parent=Os03t0769000-00
Chr03	irgsp1_rep	CDS	31828317	31828439	.	-	0	Parent=Os03t0769000-00
Chr03	irgsp1_rep	CDS	31827742	31828212	.	-	0	Parent=Os03t0769000-00
Chr03	irgsp1_rep	CDS	31827164	31827570	.	-	0	Parent=Os03t0769000-00
Chr03	irgsp1_rep	CDS	31826970	31827069	.	-	1	Parent=Os03t0769000-00
Chr03	irgsp1_rep	CDS	31826817	31826876	.	-	0	Parent=Os03t0769000-00
Chr03	irgsp1_rep	CDS	31826636	31826722	.	-	0	Parent=Os03t0769000-00
Chr03	irgsp1_rep	CDS	31826389	31826526	.	-	0	Parent=Os03t0769000-00
Chr03	irgsp1_rep	CDS	31825700	31826014	.	-	0	Parent=Os03t0769000-00
Chr03	irgsp1_rep	three_prime_UTR	31825518	31825699	.	-	.	Parent=Os03t0769000-00
Chr03	irgsp1_rep	mRNA	31831388	31831979	.	-	.	ID=Os03t0769025-00;Name=Os03t0769025-00;Locus_id=Os03g0769025;Note=Non-protein coding transcript.;Transcript_evidence=CT835133 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os03t0769025-00
Chr03	irgsp1_rep	exon	31831388	31831979	.	-	.	Parent=Os03t0769025-00
Chr03	irgsp1_rep	mRNA	31840737	31844402	.	-	.	ID=Os03t0769050-00;Name=Os03t0769050-00;Locus_id=Os03g0769050;Note=Similar to EMB2756.;Transcript_evidence=BT061485 (DDBJ);ORF_evidence=NP_001151808.1 (RefSeq);InterPro=Protein of unknown function DUF616 (IPR006852);TENOR=Os03t0769050-00;KEGG=Os03t0769050-00
Chr03	irgsp1_rep	CDS	31844087	31844402	.	-	0	Parent=Os03t0769050-00
Chr03	irgsp1_rep	CDS	31842929	31843152	.	-	2	Parent=Os03t0769050-00
Chr03	irgsp1_rep	CDS	31842612	31842788	.	-	0	Parent=Os03t0769050-00
Chr03	irgsp1_rep	CDS	31842370	31842525	.	-	0	Parent=Os03t0769050-00
Chr03	irgsp1_rep	CDS	31841874	31842150	.	-	0	Parent=Os03t0769050-00
Chr03	irgsp1_rep	CDS	31840739	31840977	.	-	2	Parent=Os03t0769050-00
Chr03	irgsp1_rep	three_prime_UTR	31840737	31840738	.	-	.	Parent=Os03t0769050-00
Chr03	irgsp1_rep	mRNA	31845466	31847238	.	-	.	ID=Os03t0769100-01;Name=Os03t0769100-01;Locus_id=Os03g0769100;RAP-DB Gene Symbol Synonym(s)=WGL2%2C RPS9;RAP-DB Gene Name Synonym(s)=white green leaf 2%2C ribosomal protein S9;CGSNL Gene Symbol=WGL2;CGSNL Gene Name=WHITE GREEN LEAF 2;Oryzabase Gene Symbol Synonym(s)=rps9%2C OsRPS9%2C OsWGL2;Oryzabase Gene Name Synonym(s)=ribosomal protein S9%2C chloroplast ribosomal protein S9%2C plastid ribosomal protein S9%2C white green leaf 2;Note=Chloroplast ribosomal protein S9%2C Early chloroplast development;Transcript_evidence=AK068283,AK104434;ORF_evidence=Q9XJ28;GO=Biological Process: translation (GO:0006412),Molecular Function: structural constituent of ribosome (GO:0003735),Cellular Component: ribosome (GO:0005840);InterPro=Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Ribosomal protein S5 domain 2-type fold (IPR020568),Ribosomal protein S9 (IPR000754),Ribosomal protein S9%2C bacterial/plastid (IPR023035),Ribosomal protein S9%2C conserved site (IPR020574);NIAS_FLcDNA=J013146D21,006-208-D02;Manual Curation=July 19%2C 2018;Literature_PMID=29995230,10359080;Oryzabase=14482;TENOR=Os03t0769100-01;Subcellular location=chloroplast (GO:0009507)
Chr03	irgsp1_rep	five_prime_UTR	31847177	31847238	.	-	.	Parent=Os03t0769100-01
Chr03	irgsp1_rep	CDS	31846793	31847176	.	-	0	Parent=Os03t0769100-01
Chr03	irgsp1_rep	CDS	31845645	31845932	.	-	0	Parent=Os03t0769100-01
Chr03	irgsp1_rep	three_prime_UTR	31845466	31845644	.	-	.	Parent=Os03t0769100-01
Chr03	irgsp1_rep	mRNA	31845464	31845654	.	-	.	ID=Os03t0769100-02;Name=Os03t0769100-02;Locus_id=Os03g0769100;CGSNL Gene Symbol=WGL2;CGSNL Gene Name=WHITE GREEN LEAF 2;Oryzabase Gene Symbol Synonym(s)=rps9%2C OsRPS9%2C OsWGL2;Oryzabase Gene Name Synonym(s)=ribosomal protein S9%2C chloroplast ribosomal protein S9%2C plastid ribosomal protein S9%2C white green leaf 2;Note=Non-protein coding transcript.;Transcript_evidence=AK060503 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-018-D11;Oryzabase=14482;TENOR=Os03t0769100-02
Chr03	irgsp1_rep	exon	31845464	31845654	.	-	.	Parent=Os03t0769100-02
Chr03	irgsp1_rep	mRNA	31850484	31850558	.	-	.	ID=Os03t0769300-00;Name=Os03t0769300-00;Locus_id=Os03g0769300;Note=Non-protein coding transcript.;Transcript_evidence=X06283 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0769300-00
Chr03	irgsp1_rep	exon	31850484	31850558	.	-	.	Parent=Os03t0769300-00
Chr03	irgsp1_rep	mRNA	31853946	31857784	.	+	.	ID=Os03t0769400-01;Name=Os03t0769400-01;Locus_id=Os03g0769400;Note=BTB/POZ fold domain containing protein.;Transcript_evidence=AK068827 (DDBJ%2C Best hit);ORF_evidence=A2XMC4 (UniProt);InterPro=BTB/POZ fold (IPR011333);NIAS_FLcDNA=J013162K08;Expression=AK068827;TENOR=Os03t0769400-01;KEGG=Os03t0769400-01
Chr03	irgsp1_rep	five_prime_UTR	31853946	31854112	.	+	.	Parent=Os03t0769400-01
Chr03	irgsp1_rep	five_prime_UTR	31854344	31854400	.	+	.	Parent=Os03t0769400-01
Chr03	irgsp1_rep	five_prime_UTR	31854497	31854616	.	+	.	Parent=Os03t0769400-01
Chr03	irgsp1_rep	five_prime_UTR	31855097	31855166	.	+	.	Parent=Os03t0769400-01
Chr03	irgsp1_rep	CDS	31855167	31855793	.	+	0	Parent=Os03t0769400-01
Chr03	irgsp1_rep	CDS	31856580	31857521	.	+	0	Parent=Os03t0769400-01
Chr03	irgsp1_rep	three_prime_UTR	31857522	31857784	.	+	.	Parent=Os03t0769400-01
Chr03	irgsp1_rep	mRNA	31855082	31857863	.	-	.	ID=Os03t0769450-00;Name=Os03t0769450-00;Locus_id=Os03g0769450;Note=Non-protein coding transcript.;Transcript_evidence=tplb0045o13 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os03t0769450-00
Chr03	irgsp1_rep	exon	31857695	31857863	.	-	.	Parent=Os03t0769450-00
Chr03	irgsp1_rep	exon	31856578	31857602	.	-	.	Parent=Os03t0769450-00
Chr03	irgsp1_rep	exon	31855082	31855786	.	-	.	Parent=Os03t0769450-00
Chr03	irgsp1_rep	mRNA	31858526	31859454	.	-	.	ID=Os03t0769500-01;Name=Os03t0769500-01;Locus_id=Os03g0769500;Oryzabase Gene Name Synonym(s)=CaM-like protein;Note=EF-Hand type domain containing protein.;Transcript_evidence=AK107501 (DDBJ%2C Best hit);ORF_evidence=NP_001148643.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=002-129-E01;Oryzabase=16037;Expression=AK107501;TENOR=Os03t0769500-01;KEGG=Os03t0769500-01
Chr03	irgsp1_rep	five_prime_UTR	31859363	31859454	.	-	.	Parent=Os03t0769500-01
Chr03	irgsp1_rep	CDS	31858805	31859362	.	-	0	Parent=Os03t0769500-01
Chr03	irgsp1_rep	three_prime_UTR	31858526	31858804	.	-	.	Parent=Os03t0769500-01
Chr03	irgsp1_rep	mRNA	31860523	31863362	.	-	.	ID=Os03t0769600-01;Name=Os03t0769600-01;Locus_id=Os03g0769600;Note=ResB-like family protein.;Transcript_evidence=AK100054 (DDBJ%2C Best hit);ORF_evidence=Q75KA9 (UniProt);InterPro=ResB-like domain (IPR007816);NIAS_FLcDNA=J013157P08;Expression=AK100054;TENOR=Os03t0769600-01;KEGG=Os03t0769600-01
Chr03	irgsp1_rep	five_prime_UTR	31863307	31863362	.	-	.	Parent=Os03t0769600-01
Chr03	irgsp1_rep	CDS	31862883	31863306	.	-	0	Parent=Os03t0769600-01
Chr03	irgsp1_rep	CDS	31862519	31862738	.	-	2	Parent=Os03t0769600-01
Chr03	irgsp1_rep	CDS	31862281	31862392	.	-	1	Parent=Os03t0769600-01
Chr03	irgsp1_rep	CDS	31861931	31862203	.	-	0	Parent=Os03t0769600-01
Chr03	irgsp1_rep	CDS	31861588	31861853	.	-	0	Parent=Os03t0769600-01
Chr03	irgsp1_rep	CDS	31861340	31861496	.	-	1	Parent=Os03t0769600-01
Chr03	irgsp1_rep	CDS	31861159	31861242	.	-	0	Parent=Os03t0769600-01
Chr03	irgsp1_rep	CDS	31860913	31861071	.	-	0	Parent=Os03t0769600-01
Chr03	irgsp1_rep	three_prime_UTR	31860523	31860912	.	-	.	Parent=Os03t0769600-01
Chr03	irgsp1_rep	mRNA	31867214	31867887	.	+	.	ID=Os03t0769700-01;Name=Os03t0769700-01;Locus_id=Os03g0769700;Note=Uncharacterised conserved protein UCP031279 domain containing protein.;Transcript_evidence=AK063727 (DDBJ%2C Best hit);ORF_evidence=A2XMC7 (UniProt);InterPro=Uncharacterised conserved protein UCP031279 (IPR016972);NIAS_FLcDNA=001-120-E01;Expression=AK063727;TENOR=Os03t0769700-01;KEGG=Os03t0769700-01
Chr03	irgsp1_rep	five_prime_UTR	31867214	31867266	.	+	.	Parent=Os03t0769700-01
Chr03	irgsp1_rep	CDS	31867267	31867734	.	+	0	Parent=Os03t0769700-01
Chr03	irgsp1_rep	three_prime_UTR	31867735	31867887	.	+	.	Parent=Os03t0769700-01
Chr03	irgsp1_rep	mRNA	31869151	31871497	.	+	.	ID=Os03t0769800-01;Name=Os03t0769800-01;Locus_id=Os03g0769800;Note=Similar to Homeodomain-leucine zipper protein interfascicular fiberless 1 (Revoluta).;Transcript_evidence=AK100250 (DDBJ%2C Best hit);ORF_evidence=Q10EF9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);NIAS_FLcDNA=J023060H19;Expression=AK100250;TENOR=Os03t0769800-01;KEGG=Os03t0769800-01
Chr03	irgsp1_rep	five_prime_UTR	31869151	31869661	.	+	.	Parent=Os03t0769800-01
Chr03	irgsp1_rep	CDS	31869662	31870390	.	+	0	Parent=Os03t0769800-01
Chr03	irgsp1_rep	three_prime_UTR	31870391	31871497	.	+	.	Parent=Os03t0769800-01
Chr03	irgsp1_rep	mRNA	31874977	31876331	.	+	.	ID=Os03t0769900-01;Name=Os03t0769900-01;Locus_id=Os03g0769900;Note=Similar to CF9.;Transcript_evidence=AK243138 (DDBJ%2C Best hit);ORF_evidence=NP_001149709.1 (RefSeq);NIAS_FLcDNA=J100031D15;TENOR=Os03t0769900-01;KEGG=Os03t0769900-01
Chr03	irgsp1_rep	five_prime_UTR	31874977	31875113	.	+	.	Parent=Os03t0769900-01
Chr03	irgsp1_rep	CDS	31875114	31876217	.	+	0	Parent=Os03t0769900-01
Chr03	irgsp1_rep	three_prime_UTR	31876218	31876331	.	+	.	Parent=Os03t0769900-01
Chr03	irgsp1_rep	mRNA	31885024	31885617	.	+	.	ID=Os03t0770000-00;Name=Os03t0770000-00;Locus_id=Os03g0770000;CGSNL Gene Symbol=BZIP32;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 32;Oryzabase Gene Symbol Synonym(s)=OsbZIP32;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 32;Note=bZIP transcription factor%2C bZIP-1 domain containing protein.;Transcript_evidence=EU976645 (DDBJ);ORF_evidence=NP_001051401.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);Oryzabase=10119;TENOR=Os03t0770000-00;KEGG=Os03t0770000-00
Chr03	irgsp1_rep	five_prime_UTR	31885024	31885116	.	+	.	Parent=Os03t0770000-00
Chr03	irgsp1_rep	CDS	31885117	31885614	.	+	0	Parent=Os03t0770000-00
Chr03	irgsp1_rep	three_prime_UTR	31885615	31885617	.	+	.	Parent=Os03t0770000-00
Chr03	irgsp1_rep	mRNA	31888363	31896406	.	+	.	ID=Os03t0770100-01;Name=Os03t0770100-01;Locus_id=Os03g0770100;CGSNL Gene Symbol=GRP2;CGSNL Gene Name=GLYCINE-RICH RNA-BINDING PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsGRP2;Oryzabase Gene Name Synonym(s)=glycine-rich RNA-binding protein 2;Note=Conserved hypothetical protein.;Transcript_evidence=AK108776 (DDBJ%2C Best hit);ORF_evidence=Q75KB4 (UniProt);NIAS_FLcDNA=002-150-H12;Oryzabase=8938;TENOR=Os03t0770100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	31888363	31888720	.	+	0	Parent=Os03t0770100-01
Chr03	irgsp1_rep	CDS	31890068	31890222	.	+	2	Parent=Os03t0770100-01
Chr03	irgsp1_rep	three_prime_UTR	31890223	31890229	.	+	.	Parent=Os03t0770100-01
Chr03	irgsp1_rep	three_prime_UTR	31895639	31896406	.	+	.	Parent=Os03t0770100-01
Chr03	irgsp1_rep	mRNA	31922037	31925719	.	+	.	ID=Os03t0770700-01;Name=Os03t0770700-01;Locus_id=Os03g0770700;CGSNL Gene Symbol=PLT7;CGSNL Gene Name=PLETHORA 7;Oryzabase Gene Symbol Synonym(s)=OsPLT7%2C AP2/EREBP#088%2C AP2/EREBP88;Oryzabase Gene Name Synonym(s)=Plethora 7%2C APETALA2/ethylene-responsive element binding protein 88;Note=Hypothetical conserved gene.;Transcript_evidence=AK241712 (DDBJ%2C Best hit);ORF_evidence=F2EGP1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471);NIAS_FLcDNA=J065197H24;Oryzabase=10470;TENOR=Os03t0770700-01;KEGG=Os03t0770700-01
Chr03	irgsp1_rep	five_prime_UTR	31922037	31922119	.	+	.	Parent=Os03t0770700-01
Chr03	irgsp1_rep	CDS	31922120	31922486	.	+	0	Parent=Os03t0770700-01
Chr03	irgsp1_rep	CDS	31922665	31923229	.	+	2	Parent=Os03t0770700-01
Chr03	irgsp1_rep	CDS	31923340	31923427	.	+	1	Parent=Os03t0770700-01
Chr03	irgsp1_rep	three_prime_UTR	31923428	31923547	.	+	.	Parent=Os03t0770700-01
Chr03	irgsp1_rep	three_prime_UTR	31923638	31923726	.	+	.	Parent=Os03t0770700-01
Chr03	irgsp1_rep	three_prime_UTR	31923893	31923966	.	+	.	Parent=Os03t0770700-01
Chr03	irgsp1_rep	three_prime_UTR	31924061	31924111	.	+	.	Parent=Os03t0770700-01
Chr03	irgsp1_rep	three_prime_UTR	31924214	31924290	.	+	.	Parent=Os03t0770700-01
Chr03	irgsp1_rep	three_prime_UTR	31924861	31925719	.	+	.	Parent=Os03t0770700-01
Chr03	irgsp1_rep	mRNA	31922684	31923247	.	-	.	ID=Os03t0770750-00;Name=Os03t0770750-00;Locus_id=Os03g0770750;Note=Hypothetical gene.;Transcript_evidence=EU942577 (DDBJ);ORF_evidence=GeneMark;TENOR=Os03t0770750-00;KEGG=Os03t0770750-00
Chr03	irgsp1_rep	five_prime_UTR	31923185	31923247	.	-	.	Parent=Os03t0770750-00
Chr03	irgsp1_rep	CDS	31922948	31923184	.	-	0	Parent=Os03t0770750-00
Chr03	irgsp1_rep	three_prime_UTR	31922684	31922947	.	-	.	Parent=Os03t0770750-00
Chr03	irgsp1_rep	mRNA	31924821	31925500	.	-	.	ID=Os03t0770775-00;Name=Os03t0770775-00;Locus_id=Os03g0770775;Note=Hypothetical protein.;Transcript_evidence=EU949353 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0770775-00
Chr03	irgsp1_rep	five_prime_UTR	31925474	31925500	.	-	.	Parent=Os03t0770775-00
Chr03	irgsp1_rep	CDS	31924821	31925473	.	-	0	Parent=Os03t0770775-00
Chr03	irgsp1_rep	mRNA	31930835	31934477	.	-	.	ID=Os03t0770800-01;Name=Os03t0770800-01;Locus_id=Os03g0770800;CGSNL Gene Symbol=CSLC9;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE C9;Oryzabase Gene Symbol Synonym(s)=OsCslC9%2C OsCSLC9;Note=CSLC9.;Transcript_evidence=AK121805 (DDBJ%2C Best hit);ORF_evidence=C8CBX4 (UniProt);InterPro=Glycosyl transferase%2C family 2 (IPR001173);NIAS_FLcDNA=J033097L05;Oryzabase=13896;Expression=AK121805;TENOR=Os03t0770800-01;KEGG=Os03t0770800-01
Chr03	irgsp1_rep	five_prime_UTR	31934273	31934477	.	-	.	Parent=Os03t0770800-01
Chr03	irgsp1_rep	CDS	31934230	31934272	.	-	0	Parent=Os03t0770800-01
Chr03	irgsp1_rep	CDS	31933505	31933917	.	-	2	Parent=Os03t0770800-01
Chr03	irgsp1_rep	CDS	31933105	31933413	.	-	0	Parent=Os03t0770800-01
Chr03	irgsp1_rep	CDS	31932723	31933013	.	-	0	Parent=Os03t0770800-01
Chr03	irgsp1_rep	CDS	31932517	31932630	.	-	0	Parent=Os03t0770800-01
Chr03	irgsp1_rep	CDS	31931098	31931718	.	-	0	Parent=Os03t0770800-01
Chr03	irgsp1_rep	three_prime_UTR	31930835	31931097	.	-	.	Parent=Os03t0770800-01
Chr03	irgsp1_rep	mRNA	31933503	31934229	.	+	.	ID=Os03t0770851-00;Name=Os03t0770851-00;Locus_id=Os03g0770851;Note=Hypothetical protein.;Transcript_evidence=BT066271 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0770851-00
Chr03	irgsp1_rep	five_prime_UTR	31933503	31933618	.	+	.	Parent=Os03t0770851-00
Chr03	irgsp1_rep	CDS	31933619	31934229	.	+	0	Parent=Os03t0770851-00
Chr03	irgsp1_rep	mRNA	31942581	31945141	.	-	.	ID=Os03t0770900-01;Name=Os03t0770900-01;Locus_id=Os03g0770900;Note=Conserved hypothetical protein.;Transcript_evidence=AK106660 (DDBJ%2C Best hit);ORF_evidence=A2XMD3 (UniProt);NIAS_FLcDNA=002-113-G11;Expression=AK106660;TENOR=Os03t0770900-01;KEGG=Os03t0770900-01
Chr03	irgsp1_rep	five_prime_UTR	31945108	31945141	.	-	.	Parent=Os03t0770900-01
Chr03	irgsp1_rep	CDS	31944918	31945107	.	-	0	Parent=Os03t0770900-01
Chr03	irgsp1_rep	CDS	31944769	31944830	.	-	2	Parent=Os03t0770900-01
Chr03	irgsp1_rep	CDS	31944627	31944688	.	-	0	Parent=Os03t0770900-01
Chr03	irgsp1_rep	CDS	31943682	31944525	.	-	1	Parent=Os03t0770900-01
Chr03	irgsp1_rep	CDS	31943515	31943604	.	-	0	Parent=Os03t0770900-01
Chr03	irgsp1_rep	CDS	31943348	31943425	.	-	0	Parent=Os03t0770900-01
Chr03	irgsp1_rep	CDS	31943207	31943266	.	-	0	Parent=Os03t0770900-01
Chr03	irgsp1_rep	CDS	31942939	31943108	.	-	0	Parent=Os03t0770900-01
Chr03	irgsp1_rep	CDS	31942766	31942847	.	-	1	Parent=Os03t0770900-01
Chr03	irgsp1_rep	three_prime_UTR	31942581	31942765	.	-	.	Parent=Os03t0770900-01
Chr03	irgsp1_rep	mRNA	31952891	31954550	.	-	.	ID=Os03t0771100-01;Name=Os03t0771100-01;Locus_id=Os03g0771100;Note=Myb transcription factor domain containing protein.;Transcript_evidence=AK112018 (DDBJ%2C Best hit);ORF_evidence=Q8S3Z1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=006-308-C02;Expression=AK112018;TENOR=Os03t0771100-01;KEGG=Os03t0771100-01
Chr03	irgsp1_rep	five_prime_UTR	31954449	31954550	.	-	.	Parent=Os03t0771100-01
Chr03	irgsp1_rep	CDS	31954313	31954448	.	-	0	Parent=Os03t0771100-01
Chr03	irgsp1_rep	CDS	31954055	31954184	.	-	2	Parent=Os03t0771100-01
Chr03	irgsp1_rep	CDS	31953190	31953889	.	-	1	Parent=Os03t0771100-01
Chr03	irgsp1_rep	three_prime_UTR	31952891	31953189	.	-	.	Parent=Os03t0771100-01
Chr03	irgsp1_rep	mRNA	31964738	31970261	.	+	.	ID=Os03t0771500-01;Name=Os03t0771500-01;Locus_id=Os03g0771500;CGSNL Gene Symbol=OSH43;CGSNL Gene Name=HOMEOBOX 43;Oryzabase Gene Symbol Synonym(s)=OsH43%2C H43;Oryzabase Gene Name Synonym(s)=Oryza sativa homeobox43%2C Homeobox protein knotted-1-like 8%2C Homeobox protein OSH43%2C Rice KNOX gene-43;Note=Similar to Isoform 2 of Homeobox protein knotted-1-like 8.;Transcript_evidence=AK107296 (DDBJ%2C Best hit);ORF_evidence=Q10ED2-2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),ELK (IPR005539),KNOX1 (IPR005540),KNOX2 (IPR005541),Homeobox KN domain (IPR008422),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Homeobox%2C conserved site (IPR017970);NIAS_FLcDNA=002-126-C04;Oryzabase=2979;Expression=AK107296;TENOR=Os03t0771500-01;KEGG=Os03t0771500-01
Chr03	irgsp1_rep	five_prime_UTR	31964738	31964877	.	+	.	Parent=Os03t0771500-01
Chr03	irgsp1_rep	CDS	31964878	31965192	.	+	0	Parent=Os03t0771500-01
Chr03	irgsp1_rep	CDS	31965326	31965463	.	+	0	Parent=Os03t0771500-01
Chr03	irgsp1_rep	CDS	31965590	31965698	.	+	0	Parent=Os03t0771500-01
Chr03	irgsp1_rep	CDS	31969455	31969651	.	+	2	Parent=Os03t0771500-01
Chr03	irgsp1_rep	CDS	31969754	31970005	.	+	0	Parent=Os03t0771500-01
Chr03	irgsp1_rep	three_prime_UTR	31970006	31970261	.	+	.	Parent=Os03t0771500-01
Chr03	irgsp1_rep	mRNA	31986608	31991587	.	+	.	ID=Os03t0772100-00;Name=Os03t0772100-00;Locus_id=Os03g0772100;Note=Similar to Homeobox protein knotted-1-like 8.;Transcript_evidence=DQ056233 (DDBJ);ORF_evidence=Q10ED2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),ELK (IPR005539),KNOX2 (IPR005541),Homeobox KN domain (IPR008422),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Homeobox%2C conserved site (IPR017970);TENOR=Os03t0772100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	31986608	31987010	.	+	0	Parent=Os03t0772100-00
Chr03	irgsp1_rep	CDS	31987207	31987291	.	+	2	Parent=Os03t0772100-00
Chr03	irgsp1_rep	CDS	31987442	31987565	.	+	1	Parent=Os03t0772100-00
Chr03	irgsp1_rep	CDS	31990949	31991587	.	+	0	Parent=Os03t0772100-00
Chr03	irgsp1_rep	mRNA	31998154	32000618	.	-	.	ID=Os03t0772300-01;Name=Os03t0772300-01;Locus_id=Os03g0772300;Note=Conserved hypothetical protein.;Transcript_evidence=AK120205 (DDBJ%2C Best hit);ORF_evidence=B9F5X6 (UniProt);NIAS_FLcDNA=J013037P19;TENOR=Os03t0772300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	31998972	32000618	.	-	.	Parent=Os03t0772300-01
Chr03	irgsp1_rep	CDS	31998887	31998971	.	-	0	Parent=Os03t0772300-01
Chr03	irgsp1_rep	CDS	31998485	31998561	.	-	2	Parent=Os03t0772300-01
Chr03	irgsp1_rep	three_prime_UTR	31998154	31998484	.	-	.	Parent=Os03t0772300-01
Chr03	irgsp1_rep	mRNA	32008474	32010598	.	+	.	ID=Os03t0772600-01;Name=Os03t0772600-01;Locus_id=Os03g0772600;CGSNL Gene Symbol=LRK7;CGSNL Gene Name=LECTIN-LIKE RECEPTOR KINASE 7;Oryzabase Gene Symbol Synonym(s)=OsLRk7%2C LRk7;Oryzabase Gene Name Synonym(s)=lectin-like receptor kinase 7;Note=Similar to Lectin-like receptor kinase 7%3B2.;Transcript_evidence=AK120949 (DDBJ%2C Best hit);ORF_evidence=NP_001147990.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine-threonine/tyrosine-protein kinase (IPR001245),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023038D05;Oryzabase=22460;Expression=AK120949;TENOR=Os03t0772600-01;KEGG=Os03t0772600-01
Chr03	irgsp1_rep	five_prime_UTR	32008474	32008474	.	+	.	Parent=Os03t0772600-01
Chr03	irgsp1_rep	CDS	32008475	32009887	.	+	0	Parent=Os03t0772600-01
Chr03	irgsp1_rep	three_prime_UTR	32009888	32010598	.	+	.	Parent=Os03t0772600-01
Chr03	irgsp1_rep	mRNA	32013259	32015229	.	-	.	ID=Os03t0772700-00;Name=Os03t0772700-00;Locus_id=Os03g0772700;Note=Similar to lectin-like receptor kinase 7.;Transcript_evidence=AK331609 (DDBJ);ORF_evidence=NP_001147990.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine-threonine/tyrosine-protein kinase (IPR001245),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os03t0772700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	32014671	32015229	.	-	.	Parent=Os03t0772700-00
Chr03	irgsp1_rep	CDS	32013840	32014670	.	-	0	Parent=Os03t0772700-00
Chr03	irgsp1_rep	three_prime_UTR	32013259	32013839	.	-	.	Parent=Os03t0772700-00
Chr03	irgsp1_rep	mRNA	32013412	32015235	.	+	.	ID=Os03t0772750-00;Name=Os03t0772750-00;Locus_id=Os03g0772750;Note=Hypothetical protein.;Transcript_evidence=EU956864 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0772750-00
Chr03	irgsp1_rep	five_prime_UTR	32013412	32014668	.	+	.	Parent=Os03t0772750-00
Chr03	irgsp1_rep	CDS	32014669	32015094	.	+	0	Parent=Os03t0772750-00
Chr03	irgsp1_rep	three_prime_UTR	32015095	32015235	.	+	.	Parent=Os03t0772750-00
Chr03	irgsp1_rep	mRNA	32017648	32019524	.	+	.	ID=Os03t0772800-01;Name=Os03t0772800-01;Locus_id=Os03g0772800;Note=CytoChrome c oxidase%2C subunit VIa family protein.;Transcript_evidence=AK121608 (DDBJ%2C Best hit);ORF_evidence=NP_195496.1 (RefSeq);GO=Cellular Component: mitochondrial inner membrane (GO:0005743),Cellular Component: mitochondrial respiratory chain complex IV (GO:0005751),Molecular Function: cytoChrome-c oxidase activity (GO:0004129);InterPro=CytoChrome c oxidase%2C subunit VIa (IPR001349);NIAS_FLcDNA=J033042K10;Expression=AK121608;TENOR=Os03t0772800-01;KEGG=Os03t0772800-01 (EC:1.9.3.1)
Chr03	irgsp1_rep	five_prime_UTR	32017648	32017707	.	+	.	Parent=Os03t0772800-01
Chr03	irgsp1_rep	CDS	32017708	32017819	.	+	0	Parent=Os03t0772800-01
Chr03	irgsp1_rep	CDS	32017932	32018038	.	+	2	Parent=Os03t0772800-01
Chr03	irgsp1_rep	CDS	32018121	32018163	.	+	0	Parent=Os03t0772800-01
Chr03	irgsp1_rep	CDS	32019224	32019258	.	+	2	Parent=Os03t0772800-01
Chr03	irgsp1_rep	three_prime_UTR	32019259	32019524	.	+	.	Parent=Os03t0772800-01
Chr03	irgsp1_rep	mRNA	32017676	32019527	.	+	.	ID=Os03t0772800-02;Name=Os03t0772800-02;Locus_id=Os03g0772800;Note=CytoChrome c oxidase%2C subunit VIa family protein.;Transcript_evidence=AK059576 (DDBJ%2C Best hit);ORF_evidence=NP_195496.1 (RefSeq);GO=Cellular Component: mitochondrial inner membrane (GO:0005743),Cellular Component: mitochondrial respiratory chain complex IV (GO:0005751),Molecular Function: cytoChrome-c oxidase activity (GO:0004129);InterPro=CytoChrome c oxidase%2C subunit VIa (IPR001349);NIAS_FLcDNA=001-030-A10;Expression=AK059576;TENOR=Os03t0772800-02;KEGG=Os03t0772800-02 (EC:1.9.3.1)
Chr03	irgsp1_rep	five_prime_UTR	32017676	32017707	.	+	.	Parent=Os03t0772800-02
Chr03	irgsp1_rep	CDS	32017708	32017819	.	+	0	Parent=Os03t0772800-02
Chr03	irgsp1_rep	CDS	32017932	32018038	.	+	2	Parent=Os03t0772800-02
Chr03	irgsp1_rep	CDS	32018121	32018163	.	+	0	Parent=Os03t0772800-02
Chr03	irgsp1_rep	CDS	32019224	32019258	.	+	2	Parent=Os03t0772800-02
Chr03	irgsp1_rep	three_prime_UTR	32019259	32019527	.	+	.	Parent=Os03t0772800-02
Chr03	irgsp1_rep	mRNA	32019574	32021171	.	-	.	ID=Os03t0772900-01;Name=Os03t0772900-01;Locus_id=Os03g0772900;Note=Conserved hypothetical protein.;Transcript_evidence=AK110689 (DDBJ%2C Best hit);ORF_evidence=A2XME3 (UniProt);NIAS_FLcDNA=002-170-A02;Expression=AK110689;TENOR=Os03t0772900-01;KEGG=Os03t0772900-01
Chr03	irgsp1_rep	five_prime_UTR	32020971	32021171	.	-	.	Parent=Os03t0772900-01
Chr03	irgsp1_rep	five_prime_UTR	32020628	32020691	.	-	.	Parent=Os03t0772900-01
Chr03	irgsp1_rep	CDS	32019905	32020627	.	-	0	Parent=Os03t0772900-01
Chr03	irgsp1_rep	three_prime_UTR	32019574	32019904	.	-	.	Parent=Os03t0772900-01
Chr03	irgsp1_rep	mRNA	32028145	32029878	.	-	.	ID=Os03t0773000-01;Name=Os03t0773000-01;Locus_id=Os03g0773000;Note=Protein of unknown function DUF1005 family protein.;Transcript_evidence=AK100695 (DDBJ%2C Best hit);ORF_evidence=A3AN47 (UniProt);InterPro=Protein of unknown function DUF1005 (IPR010410);NIAS_FLcDNA=J023114I22;Expression=AK100695;TENOR=Os03t0773000-01;KEGG=Os03t0773000-01
Chr03	irgsp1_rep	five_prime_UTR	32029765	32029878	.	-	.	Parent=Os03t0773000-01
Chr03	irgsp1_rep	CDS	32028430	32029764	.	-	0	Parent=Os03t0773000-01
Chr03	irgsp1_rep	three_prime_UTR	32028145	32028429	.	-	.	Parent=Os03t0773000-01
Chr03	irgsp1_rep	mRNA	32028367	32029918	.	+	.	ID=Os03t0773050-00;Name=Os03t0773050-00;Locus_id=Os03g0773050;Note=Hypothetical gene.;Transcript_evidence=EU958044 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0773050-00;KEGG=Os03t0773050-00
Chr03	irgsp1_rep	five_prime_UTR	32028367	32029329	.	+	.	Parent=Os03t0773050-00
Chr03	irgsp1_rep	CDS	32029330	32029830	.	+	0	Parent=Os03t0773050-00
Chr03	irgsp1_rep	three_prime_UTR	32029831	32029918	.	+	.	Parent=Os03t0773050-00
Chr03	irgsp1_rep	mRNA	32035018	32040880	.	-	.	ID=Os03t0773100-01;Name=Os03t0773100-01;Locus_id=Os03g0773100;Note=Similar to Myb/SANT domain protein.;Transcript_evidence=AK065113 (DDBJ%2C Best hit);ORF_evidence=NP_001049513.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),SANT%2C eukarya (IPR017884);NIAS_FLcDNA=J013001O04;Expression=AK065113;TENOR=Os03t0773100-01;KEGG=Os03t0773100-01
Chr03	irgsp1_rep	five_prime_UTR	32040761	32040880	.	-	.	Parent=Os03t0773100-01
Chr03	irgsp1_rep	five_prime_UTR	32040562	32040594	.	-	.	Parent=Os03t0773100-01
Chr03	irgsp1_rep	CDS	32040454	32040561	.	-	0	Parent=Os03t0773100-01
Chr03	irgsp1_rep	CDS	32040307	32040354	.	-	0	Parent=Os03t0773100-01
Chr03	irgsp1_rep	CDS	32038725	32038834	.	-	0	Parent=Os03t0773100-01
Chr03	irgsp1_rep	CDS	32037981	32038188	.	-	1	Parent=Os03t0773100-01
Chr03	irgsp1_rep	three_prime_UTR	32037733	32037980	.	-	.	Parent=Os03t0773100-01
Chr03	irgsp1_rep	three_prime_UTR	32037410	32037552	.	-	.	Parent=Os03t0773100-01
Chr03	irgsp1_rep	three_prime_UTR	32037207	32037310	.	-	.	Parent=Os03t0773100-01
Chr03	irgsp1_rep	three_prime_UTR	32036304	32036950	.	-	.	Parent=Os03t0773100-01
Chr03	irgsp1_rep	three_prime_UTR	32035820	32036224	.	-	.	Parent=Os03t0773100-01
Chr03	irgsp1_rep	three_prime_UTR	32035594	32035731	.	-	.	Parent=Os03t0773100-01
Chr03	irgsp1_rep	three_prime_UTR	32035018	32035501	.	-	.	Parent=Os03t0773100-01
Chr03	irgsp1_rep	mRNA	32041607	32043400	.	-	.	ID=Os03t0773150-00;Name=Os03t0773150-00;Locus_id=Os03g0773150;CGSNL Gene Symbol=RPS29;CGSNL Gene Name=RIBOSOMAL PROTEIN S29;Oryzabase Gene Symbol Synonym(s)=OsRPS29;Oryzabase Gene Name Synonym(s)=ribosomal protein S29%2C ribosomal protein small subunit 29;Note=40S ribosomal protein S29.;Transcript_evidence=CU406248 (DDBJ%2C Best hit);ORF_evidence=A2ZG71 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S14 (IPR001209);Oryzabase=22188;TENOR=Os03t0773150-00;KEGG=Os03t0773150-00
Chr03	irgsp1_rep	five_prime_UTR	32043348	32043400	.	-	.	Parent=Os03t0773150-00
Chr03	irgsp1_rep	CDS	32043286	32043347	.	-	0	Parent=Os03t0773150-00
Chr03	irgsp1_rep	CDS	32042928	32043027	.	-	1	Parent=Os03t0773150-00
Chr03	irgsp1_rep	CDS	32041881	32041889	.	-	0	Parent=Os03t0773150-00
Chr03	irgsp1_rep	three_prime_UTR	32041607	32041880	.	-	.	Parent=Os03t0773150-00
Chr03	irgsp1_rep	mRNA	32043966	32048393	.	-	.	ID=Os03t0773300-01;Name=Os03t0773300-01;Locus_id=Os03g0773300;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK100394 (DDBJ%2C Best hit);ORF_evidence=NP_001105795.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023086E17;TENOR=Os03t0773300-01
Chr03	irgsp1_rep	five_prime_UTR	32048250	32048393	.	-	.	Parent=Os03t0773300-01
Chr03	irgsp1_rep	CDS	32046694	32048249	.	-	0	Parent=Os03t0773300-01
Chr03	irgsp1_rep	CDS	32045550	32045678	.	-	1	Parent=Os03t0773300-01
Chr03	irgsp1_rep	CDS	32044917	32044939	.	-	1	Parent=Os03t0773300-01
Chr03	irgsp1_rep	CDS	32044204	32044778	.	-	2	Parent=Os03t0773300-01
Chr03	irgsp1_rep	three_prime_UTR	32043966	32044203	.	-	.	Parent=Os03t0773300-01
Chr03	irgsp1_rep	mRNA	32043978	32047305	.	-	.	ID=Os03t0773300-02;Name=Os03t0773300-02;Locus_id=Os03g0773300;Note=Similar to wound and phytoChrome signaling involved receptor like kinase.;Transcript_evidence=AK058587 (DDBJ%2C Best hit);ORF_evidence=NP_001105795.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-017-G03;TENOR=Os03t0773300-02
Chr03	irgsp1_rep	five_prime_UTR	32047305	32047305	.	-	.	Parent=Os03t0773300-02
Chr03	irgsp1_rep	CDS	32046694	32047304	.	-	0	Parent=Os03t0773300-02
Chr03	irgsp1_rep	CDS	32045550	32045678	.	-	1	Parent=Os03t0773300-02
Chr03	irgsp1_rep	CDS	32044917	32044939	.	-	1	Parent=Os03t0773300-02
Chr03	irgsp1_rep	CDS	32044204	32044778	.	-	2	Parent=Os03t0773300-02
Chr03	irgsp1_rep	three_prime_UTR	32043978	32044203	.	-	.	Parent=Os03t0773300-02
Chr03	irgsp1_rep	mRNA	32044080	32047351	.	+	.	ID=Os03t0773450-00;Name=Os03t0773450-00;Locus_id=Os03g0773450;Note=Hypothetical protein.;Transcript_evidence=tplb0046o04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0773450-00
Chr03	irgsp1_rep	five_prime_UTR	32044080	32044492	.	+	.	Parent=Os03t0773450-00
Chr03	irgsp1_rep	CDS	32044493	32044780	.	+	0	Parent=Os03t0773450-00
Chr03	irgsp1_rep	CDS	32045524	32045678	.	+	0	Parent=Os03t0773450-00
Chr03	irgsp1_rep	CDS	32046694	32046991	.	+	1	Parent=Os03t0773450-00
Chr03	irgsp1_rep	three_prime_UTR	32046992	32047351	.	+	.	Parent=Os03t0773450-00
Chr03	irgsp1_rep	mRNA	32064251	32071104	.	+	.	ID=Os03t0773600-01;Name=Os03t0773600-01;Locus_id=Os03g0773600;Note=Kinesin%2C motor region domain containing protein.;Transcript_evidence=AK103310 (DDBJ%2C Best hit);ORF_evidence=NP_190534.1 (RefSeq);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752),Kinesin%2C motor region%2C conserved site (IPR019821);NIAS_FLcDNA=J033125G15;Expression=AK103310;TENOR=Os03t0773600-01;KEGG=Os03t0773600-01
Chr03	irgsp1_rep	five_prime_UTR	32064251	32064264	.	+	.	Parent=Os03t0773600-01
Chr03	irgsp1_rep	CDS	32064265	32064312	.	+	0	Parent=Os03t0773600-01
Chr03	irgsp1_rep	CDS	32064439	32064516	.	+	0	Parent=Os03t0773600-01
Chr03	irgsp1_rep	CDS	32064628	32064744	.	+	0	Parent=Os03t0773600-01
Chr03	irgsp1_rep	CDS	32066144	32066229	.	+	0	Parent=Os03t0773600-01
Chr03	irgsp1_rep	CDS	32066923	32067067	.	+	1	Parent=Os03t0773600-01
Chr03	irgsp1_rep	CDS	32067174	32067269	.	+	0	Parent=Os03t0773600-01
Chr03	irgsp1_rep	CDS	32067740	32067831	.	+	0	Parent=Os03t0773600-01
Chr03	irgsp1_rep	CDS	32068103	32068204	.	+	1	Parent=Os03t0773600-01
Chr03	irgsp1_rep	CDS	32068298	32068444	.	+	1	Parent=Os03t0773600-01
Chr03	irgsp1_rep	CDS	32068523	32068673	.	+	1	Parent=Os03t0773600-01
Chr03	irgsp1_rep	CDS	32068825	32068887	.	+	0	Parent=Os03t0773600-01
Chr03	irgsp1_rep	CDS	32068977	32069213	.	+	0	Parent=Os03t0773600-01
Chr03	irgsp1_rep	CDS	32069488	32069592	.	+	0	Parent=Os03t0773600-01
Chr03	irgsp1_rep	CDS	32069670	32069783	.	+	0	Parent=Os03t0773600-01
Chr03	irgsp1_rep	CDS	32069866	32070492	.	+	0	Parent=Os03t0773600-01
Chr03	irgsp1_rep	three_prime_UTR	32070493	32071104	.	+	.	Parent=Os03t0773600-01
Chr03	irgsp1_rep	mRNA	32069132	32071104	.	+	.	ID=Os03t0773600-02;Name=Os03t0773600-02;Locus_id=Os03g0773600;Note=Hypothetical conserved gene.;Transcript_evidence=AK059632 (DDBJ%2C Best hit);ORF_evidence=B9F5Y0 (UniProt);NIAS_FLcDNA=001-031-A05;Expression=AK059632;TENOR=Os03t0773600-02;KEGG=Os03t0773600-02
Chr03	irgsp1_rep	five_prime_UTR	32069132	32069132	.	+	.	Parent=Os03t0773600-02
Chr03	irgsp1_rep	CDS	32069133	32069213	.	+	0	Parent=Os03t0773600-02
Chr03	irgsp1_rep	CDS	32069488	32069592	.	+	0	Parent=Os03t0773600-02
Chr03	irgsp1_rep	CDS	32069670	32069783	.	+	0	Parent=Os03t0773600-02
Chr03	irgsp1_rep	CDS	32069866	32070444	.	+	0	Parent=Os03t0773600-02
Chr03	irgsp1_rep	CDS	32070686	32070715	.	+	0	Parent=Os03t0773600-02
Chr03	irgsp1_rep	three_prime_UTR	32070716	32071104	.	+	.	Parent=Os03t0773600-02
Chr03	irgsp1_rep	mRNA	32079178	32082438	.	+	.	ID=Os03t0773700-01;Name=Os03t0773700-01;Locus_id=Os03g0773700;CGSNL Gene Symbol=RLCK117;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 117;Oryzabase Gene Symbol Synonym(s)=OsRLCK117;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 117;Note=Similar to Receptor-like protein kinase 2.;Transcript_evidence=AK102670 (DDBJ%2C Best hit);ORF_evidence=Q7XZW7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320);NIAS_FLcDNA=J033101P17;Oryzabase=18823;Expression=AK102670;TENOR=Os03t0773700-01;KEGG=Os03t0773700-01
Chr03	irgsp1_rep	CDS	32079178	32081350	.	+	0	Parent=Os03t0773700-01
Chr03	irgsp1_rep	CDS	32081583	32082067	.	+	2	Parent=Os03t0773700-01
Chr03	irgsp1_rep	three_prime_UTR	32082068	32082438	.	+	.	Parent=Os03t0773700-01
Chr03	irgsp1_rep	mRNA	32086056	32089677	.	-	.	ID=Os03t0773800-01;Name=Os03t0773800-01;Locus_id=Os03g0773800;Oryzabase Gene Name Synonym(s)=malate dehydrogenase;Note=Similar to Malate dehydrogenase%2C glyoxysomal precursor (EC 1.1.1.37) (mbNAD-MDH).;Transcript_evidence=AK067105 (DDBJ%2C Best hit);ORF_evidence=A2XME9 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: malate metabolic process (GO:0006108),Biological Process: cellular carbohydrate metabolic process (GO:0044262),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: malate dehydrogenase activity (GO:0016615),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: L-malate dehydrogenase activity (GO:0030060);InterPro=Lactate/malate dehydrogenase%2C N-terminal (IPR001236),Malate dehydrogenase%2C active site (IPR001252),L-lactate/malate dehydrogenase (IPR001557),Malate dehydrogenase%2C type 1 (IPR010097),Lactate dehydrogenase/glycoside hydrolase%2C family 4%2C C-terminal (IPR015955),NAD(P)-binding domain (IPR016040),Lactate/malate dehydrogenase%2C C-terminal (IPR022383);NIAS_FLcDNA=J013097J20;Oryzabase=21343;Expression=AK067105;TENOR=Os03t0773800-01;KEGG=Os03t0773800-01 (EC:1.1.1.37)
Chr03	irgsp1_rep	five_prime_UTR	32089444	32089677	.	-	.	Parent=Os03t0773800-01
Chr03	irgsp1_rep	CDS	32089372	32089443	.	-	0	Parent=Os03t0773800-01
Chr03	irgsp1_rep	CDS	32089081	32089290	.	-	0	Parent=Os03t0773800-01
Chr03	irgsp1_rep	CDS	32087833	32088147	.	-	0	Parent=Os03t0773800-01
Chr03	irgsp1_rep	CDS	32087630	32087719	.	-	0	Parent=Os03t0773800-01
Chr03	irgsp1_rep	CDS	32087446	32087529	.	-	0	Parent=Os03t0773800-01
Chr03	irgsp1_rep	CDS	32086771	32086806	.	-	0	Parent=Os03t0773800-01
Chr03	irgsp1_rep	CDS	32086606	32086695	.	-	0	Parent=Os03t0773800-01
Chr03	irgsp1_rep	CDS	32086428	32086522	.	-	0	Parent=Os03t0773800-01
Chr03	irgsp1_rep	CDS	32086247	32086319	.	-	1	Parent=Os03t0773800-01
Chr03	irgsp1_rep	three_prime_UTR	32086056	32086246	.	-	.	Parent=Os03t0773800-01
Chr03	irgsp1_rep	mRNA	32086101	32089465	.	-	.	ID=Os03t0773800-02;Name=Os03t0773800-02;Locus_id=Os03g0773800;Oryzabase Gene Name Synonym(s)=malate dehydrogenase;Note=Similar to Malate dehydrogenase%2C glyoxysomal precursor (EC 1.1.1.37) (mbNAD-MDH).;Transcript_evidence=AK104821 (DDBJ%2C Best hit);ORF_evidence=A2XME9 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: malate metabolic process (GO:0006108),Biological Process: cellular carbohydrate metabolic process (GO:0044262),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: malate dehydrogenase activity (GO:0016615),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: L-malate dehydrogenase activity (GO:0030060);InterPro=Lactate/malate dehydrogenase%2C N-terminal (IPR001236),Malate dehydrogenase%2C active site (IPR001252),L-lactate/malate dehydrogenase (IPR001557),Malate dehydrogenase%2C type 1 (IPR010097),Lactate dehydrogenase/glycoside hydrolase%2C family 4%2C C-terminal (IPR015955),NAD(P)-binding domain (IPR016040),Lactate/malate dehydrogenase%2C C-terminal (IPR022383);NIAS_FLcDNA=001-041-B02;Oryzabase=21343;Expression=AK104821;TENOR=Os03t0773800-02;KEGG=Os03t0773800-02 (EC:1.1.1.37)
Chr03	irgsp1_rep	five_prime_UTR	32089444	32089465	.	-	.	Parent=Os03t0773800-02
Chr03	irgsp1_rep	CDS	32089372	32089443	.	-	0	Parent=Os03t0773800-02
Chr03	irgsp1_rep	CDS	32089081	32089290	.	-	0	Parent=Os03t0773800-02
Chr03	irgsp1_rep	CDS	32087833	32088147	.	-	0	Parent=Os03t0773800-02
Chr03	irgsp1_rep	CDS	32087630	32087719	.	-	0	Parent=Os03t0773800-02
Chr03	irgsp1_rep	CDS	32087446	32087529	.	-	0	Parent=Os03t0773800-02
Chr03	irgsp1_rep	CDS	32086771	32086806	.	-	0	Parent=Os03t0773800-02
Chr03	irgsp1_rep	CDS	32086606	32086695	.	-	0	Parent=Os03t0773800-02
Chr03	irgsp1_rep	CDS	32086428	32086522	.	-	0	Parent=Os03t0773800-02
Chr03	irgsp1_rep	CDS	32086247	32086319	.	-	1	Parent=Os03t0773800-02
Chr03	irgsp1_rep	three_prime_UTR	32086101	32086246	.	-	.	Parent=Os03t0773800-02
Chr03	irgsp1_rep	mRNA	32086041	32089490	.	-	.	ID=Os03t0773800-03;Name=Os03t0773800-03;Locus_id=Os03g0773800;Oryzabase Gene Name Synonym(s)=malate dehydrogenase;Note=Similar to Malate dehydrogenase%2C glyoxysomal precursor (EC 1.1.1.37) (mbNAD-MDH).;Transcript_evidence=AK064972 (DDBJ%2C Best hit);ORF_evidence=A2XME9 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: malate metabolic process (GO:0006108),Biological Process: cellular carbohydrate metabolic process (GO:0044262),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: malate dehydrogenase activity (GO:0016615),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: L-malate dehydrogenase activity (GO:0030060);InterPro=Lactate/malate dehydrogenase%2C N-terminal (IPR001236),Malate dehydrogenase%2C active site (IPR001252),L-lactate/malate dehydrogenase (IPR001557),Malate dehydrogenase%2C type 1 (IPR010097),Lactate dehydrogenase/glycoside hydrolase%2C family 4%2C C-terminal (IPR015955),NAD(P)-binding domain (IPR016040),Lactate/malate dehydrogenase%2C C-terminal (IPR022383);NIAS_FLcDNA=J013001B17;Oryzabase=21343;TENOR=Os03t0773800-03
Chr03	irgsp1_rep	five_prime_UTR	32089444	32089490	.	-	.	Parent=Os03t0773800-03
Chr03	irgsp1_rep	CDS	32089372	32089443	.	-	0	Parent=Os03t0773800-03
Chr03	irgsp1_rep	CDS	32089081	32089290	.	-	0	Parent=Os03t0773800-03
Chr03	irgsp1_rep	CDS	32087833	32088147	.	-	0	Parent=Os03t0773800-03
Chr03	irgsp1_rep	CDS	32087630	32087719	.	-	0	Parent=Os03t0773800-03
Chr03	irgsp1_rep	CDS	32087446	32087529	.	-	0	Parent=Os03t0773800-03
Chr03	irgsp1_rep	CDS	32086771	32086806	.	-	0	Parent=Os03t0773800-03
Chr03	irgsp1_rep	CDS	32086606	32086695	.	-	0	Parent=Os03t0773800-03
Chr03	irgsp1_rep	CDS	32086428	32086522	.	-	0	Parent=Os03t0773800-03
Chr03	irgsp1_rep	CDS	32086247	32086319	.	-	1	Parent=Os03t0773800-03
Chr03	irgsp1_rep	three_prime_UTR	32086041	32086246	.	-	.	Parent=Os03t0773800-03
Chr03	irgsp1_rep	mRNA	32092409	32095619	.	-	.	ID=Os03t0774200-01;Name=Os03t0774200-01;Locus_id=Os03g0774200;Note=Similar to NADH-ubiquinone oxidoreductase subunit 8 (EC 1.6.5.3).;Transcript_evidence=AK119532 (DDBJ%2C Best hit);ORF_evidence=NP_001148902.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: membrane (GO:0016020),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on NADH or NADPH (GO:0016651),Molecular Function: iron-sulfur cluster binding (GO:0051536),Molecular Function: 4 iron%2C 4 sulfur cluster binding (GO:0051539);InterPro=4Fe-4S binding domain (IPR001450),NADH-quinone oxidoreductase%2C chain I (IPR010226),Fumarate reductase%2C C-terminal (IPR012285),4Fe-4S ferredoxin%2C iron-sulpur binding domain (IPR017896),4Fe-4S ferredoxin%2C iron-sulphur binding%2C conserved site (IPR017900);NIAS_FLcDNA=001-203-F01;TENOR=Os03t0774200-01
Chr03	irgsp1_rep	five_prime_UTR	32095524	32095619	.	-	.	Parent=Os03t0774200-01
Chr03	irgsp1_rep	CDS	32095470	32095523	.	-	0	Parent=Os03t0774200-01
Chr03	irgsp1_rep	CDS	32095192	32095273	.	-	0	Parent=Os03t0774200-01
Chr03	irgsp1_rep	CDS	32094747	32094800	.	-	2	Parent=Os03t0774200-01
Chr03	irgsp1_rep	CDS	32094563	32094654	.	-	2	Parent=Os03t0774200-01
Chr03	irgsp1_rep	CDS	32094366	32094479	.	-	0	Parent=Os03t0774200-01
Chr03	irgsp1_rep	CDS	32093087	32093154	.	-	0	Parent=Os03t0774200-01
Chr03	irgsp1_rep	CDS	32092870	32092981	.	-	1	Parent=Os03t0774200-01
Chr03	irgsp1_rep	CDS	32092693	32092788	.	-	0	Parent=Os03t0774200-01
Chr03	irgsp1_rep	three_prime_UTR	32092409	32092692	.	-	.	Parent=Os03t0774200-01
Chr03	irgsp1_rep	mRNA	32092409	32095566	.	-	.	ID=Os03t0774200-02;Name=Os03t0774200-02;Locus_id=Os03g0774200;Note=Similar to NADH-ubiquinone oxidoreductase subunit 8 (EC 1.6.5.3).;Transcript_evidence=AK065851 (DDBJ%2C Best hit);ORF_evidence=NP_001148902.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: membrane (GO:0016020),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on NADH or NADPH (GO:0016651),Molecular Function: iron-sulfur cluster binding (GO:0051536),Molecular Function: 4 iron%2C 4 sulfur cluster binding (GO:0051539);InterPro=4Fe-4S binding domain (IPR001450),NADH-quinone oxidoreductase%2C chain I (IPR010226),Fumarate reductase%2C C-terminal (IPR012285),4Fe-4S ferredoxin%2C iron-sulpur binding domain (IPR017896),4Fe-4S ferredoxin%2C iron-sulphur binding%2C conserved site (IPR017900);NIAS_FLcDNA=J013041L15;TENOR=Os03t0774200-02
Chr03	irgsp1_rep	five_prime_UTR	32095524	32095566	.	-	.	Parent=Os03t0774200-02
Chr03	irgsp1_rep	CDS	32095470	32095523	.	-	0	Parent=Os03t0774200-02
Chr03	irgsp1_rep	CDS	32095192	32095273	.	-	0	Parent=Os03t0774200-02
Chr03	irgsp1_rep	CDS	32094747	32094800	.	-	2	Parent=Os03t0774200-02
Chr03	irgsp1_rep	CDS	32094563	32094654	.	-	2	Parent=Os03t0774200-02
Chr03	irgsp1_rep	CDS	32094366	32094479	.	-	0	Parent=Os03t0774200-02
Chr03	irgsp1_rep	CDS	32093087	32093154	.	-	0	Parent=Os03t0774200-02
Chr03	irgsp1_rep	CDS	32092870	32092981	.	-	1	Parent=Os03t0774200-02
Chr03	irgsp1_rep	CDS	32092693	32092788	.	-	0	Parent=Os03t0774200-02
Chr03	irgsp1_rep	three_prime_UTR	32092409	32092692	.	-	.	Parent=Os03t0774200-02
Chr03	irgsp1_rep	mRNA	32096850	32103996	.	-	.	ID=Os03t0774300-01;Name=Os03t0774300-01;Locus_id=Os03g0774300;Note=HAD superfamily (subfamily IG) hydrolase%2C 5'-Nucleotidase protein.;Transcript_evidence=AK066724 (DDBJ%2C Best hit);ORF_evidence=NP_001151027.1 (RefSeq);InterPro=HAD-superfamily hydrolase%2C subfamily IG%2C 5&apos%3B-nucleotidase (IPR008380),Purine 5&apos%3B-nucleotidase (IPR016695),HAD-like domain (IPR023214);NIAS_FLcDNA=J013088P07;Expression=AK066724;TENOR=Os03t0774300-01;KEGG=Os03t0774300-01
Chr03	irgsp1_rep	five_prime_UTR	32103655	32103996	.	-	.	Parent=Os03t0774300-01
Chr03	irgsp1_rep	CDS	32103516	32103654	.	-	0	Parent=Os03t0774300-01
Chr03	irgsp1_rep	CDS	32102644	32102906	.	-	2	Parent=Os03t0774300-01
Chr03	irgsp1_rep	CDS	32101701	32101778	.	-	0	Parent=Os03t0774300-01
Chr03	irgsp1_rep	CDS	32100686	32100906	.	-	0	Parent=Os03t0774300-01
Chr03	irgsp1_rep	CDS	32100486	32100578	.	-	1	Parent=Os03t0774300-01
Chr03	irgsp1_rep	CDS	32100243	32100326	.	-	1	Parent=Os03t0774300-01
Chr03	irgsp1_rep	CDS	32099981	32100097	.	-	1	Parent=Os03t0774300-01
Chr03	irgsp1_rep	CDS	32099783	32099873	.	-	1	Parent=Os03t0774300-01
Chr03	irgsp1_rep	CDS	32099648	32099704	.	-	0	Parent=Os03t0774300-01
Chr03	irgsp1_rep	CDS	32099402	32099455	.	-	0	Parent=Os03t0774300-01
Chr03	irgsp1_rep	CDS	32099263	32099320	.	-	0	Parent=Os03t0774300-01
Chr03	irgsp1_rep	CDS	32098720	32098796	.	-	2	Parent=Os03t0774300-01
Chr03	irgsp1_rep	CDS	32098341	32098411	.	-	0	Parent=Os03t0774300-01
Chr03	irgsp1_rep	CDS	32098131	32098191	.	-	1	Parent=Os03t0774300-01
Chr03	irgsp1_rep	CDS	32097620	32097679	.	-	0	Parent=Os03t0774300-01
Chr03	irgsp1_rep	CDS	32097396	32097458	.	-	0	Parent=Os03t0774300-01
Chr03	irgsp1_rep	CDS	32097139	32097261	.	-	0	Parent=Os03t0774300-01
Chr03	irgsp1_rep	three_prime_UTR	32096850	32097138	.	-	.	Parent=Os03t0774300-01
Chr03	irgsp1_rep	mRNA	32096945	32100734	.	-	.	ID=Os03t0774300-02;Name=Os03t0774300-02;Locus_id=Os03g0774300;Note=Similar to cDNA clone:J013088P07%2C full insert sequence.;Transcript_evidence=AK062227 (DDBJ%2C Best hit);ORF_evidence=B7ECK3 (UniProt);InterPro=HAD-superfamily hydrolase%2C subfamily IG%2C 5'-nucleotidase (IPR008380),HAD-like domain (IPR023214);NIAS_FLcDNA=001-047-D01;TENOR=Os03t0774300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	32100733	32100734	.	-	.	Parent=Os03t0774300-02
Chr03	irgsp1_rep	CDS	32100686	32100732	.	-	0	Parent=Os03t0774300-02
Chr03	irgsp1_rep	CDS	32100486	32100578	.	-	1	Parent=Os03t0774300-02
Chr03	irgsp1_rep	CDS	32100243	32100326	.	-	1	Parent=Os03t0774300-02
Chr03	irgsp1_rep	CDS	32099981	32100097	.	-	1	Parent=Os03t0774300-02
Chr03	irgsp1_rep	CDS	32099783	32099873	.	-	1	Parent=Os03t0774300-02
Chr03	irgsp1_rep	CDS	32099648	32099704	.	-	0	Parent=Os03t0774300-02
Chr03	irgsp1_rep	CDS	32099402	32099455	.	-	0	Parent=Os03t0774300-02
Chr03	irgsp1_rep	CDS	32099263	32099320	.	-	0	Parent=Os03t0774300-02
Chr03	irgsp1_rep	CDS	32098720	32098796	.	-	2	Parent=Os03t0774300-02
Chr03	irgsp1_rep	CDS	32098341	32098411	.	-	0	Parent=Os03t0774300-02
Chr03	irgsp1_rep	CDS	32098131	32098191	.	-	1	Parent=Os03t0774300-02
Chr03	irgsp1_rep	CDS	32097620	32097679	.	-	0	Parent=Os03t0774300-02
Chr03	irgsp1_rep	CDS	32097396	32097458	.	-	0	Parent=Os03t0774300-02
Chr03	irgsp1_rep	CDS	32097139	32097261	.	-	0	Parent=Os03t0774300-02
Chr03	irgsp1_rep	three_prime_UTR	32096945	32097138	.	-	.	Parent=Os03t0774300-02
Chr03	irgsp1_rep	mRNA	32096850	32099980	.	-	.	ID=Os03t0774300-03;Name=Os03t0774300-03;Locus_id=Os03g0774300;Note=Similar to cDNA clone:J013088P07%2C full insert sequence.;Transcript_evidence=AK099508 (DDBJ%2C Best hit);ORF_evidence=B7ECK3 (UniProt);InterPro=HAD-superfamily hydrolase%2C subfamily IG%2C 5'-nucleotidase (IPR008380),HAD-like domain (IPR023214);NIAS_FLcDNA=J013029E10;Expression=AK099508;TENOR=Os03t0774300-03;KEGG=Os03t0774300-03
Chr03	irgsp1_rep	five_prime_UTR	32099933	32099980	.	-	.	Parent=Os03t0774300-03
Chr03	irgsp1_rep	CDS	32099783	32099932	.	-	0	Parent=Os03t0774300-03
Chr03	irgsp1_rep	CDS	32099648	32099704	.	-	0	Parent=Os03t0774300-03
Chr03	irgsp1_rep	CDS	32099402	32099455	.	-	0	Parent=Os03t0774300-03
Chr03	irgsp1_rep	CDS	32099263	32099320	.	-	0	Parent=Os03t0774300-03
Chr03	irgsp1_rep	CDS	32098720	32098796	.	-	2	Parent=Os03t0774300-03
Chr03	irgsp1_rep	CDS	32098341	32098411	.	-	0	Parent=Os03t0774300-03
Chr03	irgsp1_rep	CDS	32098131	32098191	.	-	1	Parent=Os03t0774300-03
Chr03	irgsp1_rep	CDS	32097620	32097679	.	-	0	Parent=Os03t0774300-03
Chr03	irgsp1_rep	CDS	32097396	32097458	.	-	0	Parent=Os03t0774300-03
Chr03	irgsp1_rep	CDS	32097139	32097261	.	-	0	Parent=Os03t0774300-03
Chr03	irgsp1_rep	three_prime_UTR	32096850	32097138	.	-	.	Parent=Os03t0774300-03
Chr03	irgsp1_rep	mRNA	32107062	32109944	.	+	.	ID=Os03t0774400-01;Name=Os03t0774400-01;Locus_id=Os03g0774400;Note=Similar to predicted protein.;Transcript_evidence=AK109683 (DDBJ%2C Best hit);ORF_evidence=Q10E11 (UniProt);NIAS_FLcDNA=002-145-D07;Expression=AK109683;TENOR=Os03t0774400-01;KEGG=Os03t0774400-01
Chr03	irgsp1_rep	five_prime_UTR	32107062	32107062	.	+	.	Parent=Os03t0774400-01
Chr03	irgsp1_rep	CDS	32107063	32107294	.	+	0	Parent=Os03t0774400-01
Chr03	irgsp1_rep	CDS	32107406	32107513	.	+	2	Parent=Os03t0774400-01
Chr03	irgsp1_rep	CDS	32107637	32107761	.	+	2	Parent=Os03t0774400-01
Chr03	irgsp1_rep	CDS	32107845	32107945	.	+	0	Parent=Os03t0774400-01
Chr03	irgsp1_rep	CDS	32108052	32108111	.	+	1	Parent=Os03t0774400-01
Chr03	irgsp1_rep	CDS	32108701	32108785	.	+	1	Parent=Os03t0774400-01
Chr03	irgsp1_rep	three_prime_UTR	32108786	32109944	.	+	.	Parent=Os03t0774400-01
Chr03	irgsp1_rep	mRNA	32113298	32113796	.	+	.	ID=Os03t0774600-01;Name=Os03t0774600-01;Locus_id=Os03g0774600;Note=Conserved hypothetical protein.;Transcript_evidence=AK066871 (DDBJ%2C Best hit);ORF_evidence=Q10E08 (UniProt);NIAS_FLcDNA=J013083F24;TENOR=Os03t0774600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	32113298	32113298	.	+	.	Parent=Os03t0774600-01
Chr03	irgsp1_rep	CDS	32113299	32113403	.	+	0	Parent=Os03t0774600-01
Chr03	irgsp1_rep	CDS	32113500	32113658	.	+	0	Parent=Os03t0774600-01
Chr03	irgsp1_rep	three_prime_UTR	32113659	32113796	.	+	.	Parent=Os03t0774600-01
Chr03	irgsp1_rep	mRNA	32136863	32139508	.	-	.	ID=Os03t0775000-00;Name=Os03t0775000-00;Locus_id=Os03g0775000;Note=Leucine carboxyl methyltransferase domain containing protein.;Transcript_evidence=AK358545 (DDBJ);ORF_evidence=NP_001051427.2 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Leucine carboxyl methyltransferase (IPR007213),S-adenosyl-L-methionine-dependent methyltransferase%2C putative (IPR011610);TENOR=Os03t0775000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	32139109	32139508	.	-	0	Parent=Os03t0775000-00
Chr03	irgsp1_rep	CDS	32136954	32137591	.	-	2	Parent=Os03t0775000-00
Chr03	irgsp1_rep	three_prime_UTR	32136863	32136953	.	-	.	Parent=Os03t0775000-00
Chr03	irgsp1_rep	mRNA	32142168	32146666	.	+	.	ID=Os03t0775200-01;Name=Os03t0775200-01;Locus_id=Os03g0775200;Note=Protein of unknown function DUF248%2C methyltransferase putative family protein.;Transcript_evidence=AK120397 (DDBJ%2C Best hit);ORF_evidence=NP_564084.1 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Protein of unknown function DUF248%2C methyltransferase putative (IPR004159);NIAS_FLcDNA=J013075O03;Expression=AK120397;TENOR=Os03t0775200-01;KEGG=Os03t0775200-01
Chr03	irgsp1_rep	five_prime_UTR	32142168	32142244	.	+	.	Parent=Os03t0775200-01
Chr03	irgsp1_rep	CDS	32142245	32143105	.	+	0	Parent=Os03t0775200-01
Chr03	irgsp1_rep	CDS	32143190	32143339	.	+	0	Parent=Os03t0775200-01
Chr03	irgsp1_rep	CDS	32144202	32144472	.	+	0	Parent=Os03t0775200-01
Chr03	irgsp1_rep	CDS	32144564	32144656	.	+	2	Parent=Os03t0775200-01
Chr03	irgsp1_rep	CDS	32144849	32145023	.	+	2	Parent=Os03t0775200-01
Chr03	irgsp1_rep	CDS	32145122	32145367	.	+	1	Parent=Os03t0775200-01
Chr03	irgsp1_rep	CDS	32145507	32145701	.	+	1	Parent=Os03t0775200-01
Chr03	irgsp1_rep	CDS	32146011	32146209	.	+	1	Parent=Os03t0775200-01
Chr03	irgsp1_rep	three_prime_UTR	32146210	32146666	.	+	.	Parent=Os03t0775200-01
Chr03	irgsp1_rep	mRNA	32144995	32146180	.	-	.	ID=Os03t0775250-00;Name=Os03t0775250-00;Locus_id=Os03g0775250;Note=Hypothetical protein.;Transcript_evidence=AK358342 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0775250-00
Chr03	irgsp1_rep	five_prime_UTR	32145978	32146180	.	-	.	Parent=Os03t0775250-00
Chr03	irgsp1_rep	five_prime_UTR	32145565	32145580	.	-	.	Parent=Os03t0775250-00
Chr03	irgsp1_rep	CDS	32145494	32145564	.	-	0	Parent=Os03t0775250-00
Chr03	irgsp1_rep	CDS	32145133	32145436	.	-	1	Parent=Os03t0775250-00
Chr03	irgsp1_rep	three_prime_UTR	32144995	32145132	.	-	.	Parent=Os03t0775250-00
Chr03	irgsp1_rep	mRNA	32147180	32150669	.	+	.	ID=Os03t0775300-01;Name=Os03t0775300-01;Locus_id=Os03g0775300;Note=Flavodoxin/nitric oxide synthase domain containing protein.;Transcript_evidence=AK100507 (DDBJ%2C Best hit);ORF_evidence=Q8H8N3-2 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=Radical SAM (IPR007197),tRNA wybutosine-synthesis (IPR013917);NIAS_FLcDNA=J023099L20;Expression=AK100507;TENOR=Os03t0775300-01;KEGG=Os03t0775300-01
Chr03	irgsp1_rep	five_prime_UTR	32147180	32147249	.	+	.	Parent=Os03t0775300-01
Chr03	irgsp1_rep	CDS	32147250	32147574	.	+	0	Parent=Os03t0775300-01
Chr03	irgsp1_rep	CDS	32147734	32148122	.	+	2	Parent=Os03t0775300-01
Chr03	irgsp1_rep	CDS	32148313	32148428	.	+	0	Parent=Os03t0775300-01
Chr03	irgsp1_rep	CDS	32148640	32148815	.	+	1	Parent=Os03t0775300-01
Chr03	irgsp1_rep	CDS	32149253	32149443	.	+	2	Parent=Os03t0775300-01
Chr03	irgsp1_rep	CDS	32149526	32149612	.	+	0	Parent=Os03t0775300-01
Chr03	irgsp1_rep	CDS	32149711	32149868	.	+	0	Parent=Os03t0775300-01
Chr03	irgsp1_rep	CDS	32149962	32150172	.	+	1	Parent=Os03t0775300-01
Chr03	irgsp1_rep	CDS	32150263	32150412	.	+	0	Parent=Os03t0775300-01
Chr03	irgsp1_rep	three_prime_UTR	32150413	32150669	.	+	.	Parent=Os03t0775300-01
Chr03	irgsp1_rep	mRNA	32150822	32153382	.	-	.	ID=Os03t0775400-01;Name=Os03t0775400-01;Locus_id=Os03g0775400;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK107354 (DDBJ%2C Best hit);ORF_evidence=A2XMF9 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-126-H10;Expression=AK107354;TENOR=Os03t0775400-01;KEGG=Os03t0775400-01
Chr03	irgsp1_rep	five_prime_UTR	32153363	32153382	.	-	.	Parent=Os03t0775400-01
Chr03	irgsp1_rep	CDS	32150948	32153362	.	-	0	Parent=Os03t0775400-01
Chr03	irgsp1_rep	three_prime_UTR	32150822	32150947	.	-	.	Parent=Os03t0775400-01
Chr03	irgsp1_rep	mRNA	32153925	32157349	.	+	.	ID=Os03t0775500-01;Name=Os03t0775500-01;Locus_id=Os03g0775500;Note=Protein of unknown function DUF59 domain containing protein.;Transcript_evidence=AK121695 (DDBJ%2C Best hit);ORF_evidence=NP_001154457.1 (RefSeq);InterPro=Domain of unknown function DUF59 (IPR002744);NIAS_FLcDNA=J033072G07;Expression=AK121695;TENOR=Os03t0775500-01;KEGG=Os03t0775500-01
Chr03	irgsp1_rep	five_prime_UTR	32153925	32154012	.	+	.	Parent=Os03t0775500-01
Chr03	irgsp1_rep	CDS	32154013	32154115	.	+	0	Parent=Os03t0775500-01
Chr03	irgsp1_rep	CDS	32154199	32154304	.	+	2	Parent=Os03t0775500-01
Chr03	irgsp1_rep	CDS	32155146	32155245	.	+	1	Parent=Os03t0775500-01
Chr03	irgsp1_rep	CDS	32156320	32156365	.	+	0	Parent=Os03t0775500-01
Chr03	irgsp1_rep	CDS	32156987	32157096	.	+	2	Parent=Os03t0775500-01
Chr03	irgsp1_rep	three_prime_UTR	32157097	32157349	.	+	.	Parent=Os03t0775500-01
Chr03	irgsp1_rep	mRNA	32160235	32161982	.	+	.	ID=Os03t0775600-01;Name=Os03t0775600-01;Locus_id=Os03g0775600;Note=Similar to predicted protein.;Transcript_evidence=AK106362 (DDBJ%2C Best hit);ORF_evidence=E4MW69 (UniProt);NIAS_FLcDNA=002-102-B02;Expression=AK106362;TENOR=Os03t0775600-01;KEGG=Os03t0775600-01
Chr03	irgsp1_rep	five_prime_UTR	32160235	32160512	.	+	.	Parent=Os03t0775600-01
Chr03	irgsp1_rep	five_prime_UTR	32160692	32160819	.	+	.	Parent=Os03t0775600-01
Chr03	irgsp1_rep	CDS	32160820	32161515	.	+	0	Parent=Os03t0775600-01
Chr03	irgsp1_rep	three_prime_UTR	32161516	32161982	.	+	.	Parent=Os03t0775600-01
Chr03	irgsp1_rep	mRNA	32160281	32163775	.	+	.	ID=Os03t0775600-02;Name=Os03t0775600-02;Locus_id=Os03g0775600;Note=Similar to mRNA%2C clone: RTFL01-02-G05.;Transcript_evidence=AK066707 (DDBJ%2C Best hit);ORF_evidence=E4MW69 (UniProt);NIAS_FLcDNA=J013074F23;Expression=AK066707;TENOR=Os03t0775600-02;KEGG=Os03t0775600-02
Chr03	irgsp1_rep	five_prime_UTR	32160281	32160512	.	+	.	Parent=Os03t0775600-02
Chr03	irgsp1_rep	five_prime_UTR	32160692	32160819	.	+	.	Parent=Os03t0775600-02
Chr03	irgsp1_rep	CDS	32160820	32161494	.	+	0	Parent=Os03t0775600-02
Chr03	irgsp1_rep	CDS	32163303	32163539	.	+	0	Parent=Os03t0775600-02
Chr03	irgsp1_rep	three_prime_UTR	32163540	32163775	.	+	.	Parent=Os03t0775600-02
Chr03	irgsp1_rep	mRNA	32160817	32163960	.	-	.	ID=Os03t0775650-00;Name=Os03t0775650-00;Locus_id=Os03g0775650;Note=Non-protein coding transcript.;Transcript_evidence=tplb0059h22 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os03t0775650-00
Chr03	irgsp1_rep	exon	32163316	32163960	.	-	.	Parent=Os03t0775650-00
Chr03	irgsp1_rep	exon	32160817	32161501	.	-	.	Parent=Os03t0775650-00
Chr03	irgsp1_rep	mRNA	32164807	32168423	.	+	.	ID=Os03t0775700-01;Name=Os03t0775700-01;Locus_id=Os03g0775700;Note=Conserved hypothetical protein.;Transcript_evidence=AK067093 (DDBJ%2C Best hit);ORF_evidence=A2XMG2 (UniProt);NIAS_FLcDNA=J013096M01;Expression=AK067093;TENOR=Os03t0775700-01;KEGG=Os03t0775700-01
Chr03	irgsp1_rep	five_prime_UTR	32164807	32164975	.	+	.	Parent=Os03t0775700-01
Chr03	irgsp1_rep	CDS	32164976	32165117	.	+	0	Parent=Os03t0775700-01
Chr03	irgsp1_rep	CDS	32165350	32165444	.	+	2	Parent=Os03t0775700-01
Chr03	irgsp1_rep	CDS	32165548	32167389	.	+	0	Parent=Os03t0775700-01
Chr03	irgsp1_rep	CDS	32167472	32167586	.	+	0	Parent=Os03t0775700-01
Chr03	irgsp1_rep	CDS	32167667	32168304	.	+	2	Parent=Os03t0775700-01
Chr03	irgsp1_rep	three_prime_UTR	32168305	32168423	.	+	.	Parent=Os03t0775700-01
Chr03	irgsp1_rep	mRNA	32170460	32171927	.	+	.	ID=Os03t0775900-00;Name=Os03t0775900-00;Locus_id=Os03g0775900;Oryzabase Gene Symbol Synonym(s)=OsFbox174%2C Os_F0714;Oryzabase Gene Name Synonym(s)=F-box protein 174;Note=Conserved hypothetical protein.;Transcript_evidence=AK374530 (DDBJ);ORF_evidence=Q8H8M7 (UniProt);Oryzabase=16963;TENOR=Os03t0775900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	32170460	32170957	.	+	0	Parent=Os03t0775900-00
Chr03	irgsp1_rep	CDS	32171022	32171927	.	+	0	Parent=Os03t0775900-00
Chr03	irgsp1_rep	mRNA	32175291	32182089	.	+	.	ID=Os03t0776000-01;Name=Os03t0776000-01;Locus_id=Os03g0776000;CGSNL Gene Symbol=PGI1;CGSNL Gene Name=PHOSPHOGLUCOISOMERASE 1;Oryzabase Gene Symbol Synonym(s)=Pgi1(Pgia)%2C Pgia%2C Pgi_1%2C Pgi1%2C GPI-A%2C PHI-A%2C Pgi-a%2C PGI-a;Oryzabase Gene Name Synonym(s)=Phosphoglucoisomerase1%2C Phosphoglucoisomerase 1%2C Phosphoglucoisomerase-1%2C Glucose-6-phosphate isomerase%2C cytosolic A%2C Phosphoglucose isomerase A%2C Phosphohexose isomerase A;Note=Glucose-6-phosphate isomerase%2C cytosolic A (EC 5.3.1.9) (GPI-A) (Phosphoglucose isomerase A) (PGI-A) (Phosphohexose isomerase A) (PHI- A).;Transcript_evidence=AK103010 (DDBJ%2C Best hit);ORF_evidence=B8AKL0 (UniProt);GO=Biological Process: gluconeogenesis (GO:0006094),Biological Process: glycolysis (GO:0006096),Molecular Function: glucose-6-phosphate isomerase activity (GO:0004347);InterPro=Phosphoglucose isomerase (PGI) (IPR001672),Phosphoglucose isomerase%2C conserved site (IPR018189),Phosphoglucose isomerase%2C C-terminal (IPR023096);NIAS_FLcDNA=J033116J21;Oryzabase=567;Expression=AK103010;TENOR=Os03t0776000-01;KEGG=Os03t0776000-01 (EC:5.3.1.9)
Chr03	irgsp1_rep	five_prime_UTR	32175291	32175443	.	+	.	Parent=Os03t0776000-01
Chr03	irgsp1_rep	five_prime_UTR	32175639	32175647	.	+	.	Parent=Os03t0776000-01
Chr03	irgsp1_rep	CDS	32175648	32175698	.	+	0	Parent=Os03t0776000-01
Chr03	irgsp1_rep	CDS	32175837	32175913	.	+	0	Parent=Os03t0776000-01
Chr03	irgsp1_rep	CDS	32175997	32176078	.	+	1	Parent=Os03t0776000-01
Chr03	irgsp1_rep	CDS	32176182	32176229	.	+	0	Parent=Os03t0776000-01
Chr03	irgsp1_rep	CDS	32176503	32176658	.	+	0	Parent=Os03t0776000-01
Chr03	irgsp1_rep	CDS	32176737	32176833	.	+	0	Parent=Os03t0776000-01
Chr03	irgsp1_rep	CDS	32176932	32176974	.	+	2	Parent=Os03t0776000-01
Chr03	irgsp1_rep	CDS	32177377	32177444	.	+	1	Parent=Os03t0776000-01
Chr03	irgsp1_rep	CDS	32177546	32177630	.	+	2	Parent=Os03t0776000-01
Chr03	irgsp1_rep	CDS	32177704	32177752	.	+	1	Parent=Os03t0776000-01
Chr03	irgsp1_rep	CDS	32177973	32178045	.	+	0	Parent=Os03t0776000-01
Chr03	irgsp1_rep	CDS	32178115	32178175	.	+	2	Parent=Os03t0776000-01
Chr03	irgsp1_rep	CDS	32178824	32178890	.	+	1	Parent=Os03t0776000-01
Chr03	irgsp1_rep	CDS	32178962	32179018	.	+	0	Parent=Os03t0776000-01
Chr03	irgsp1_rep	CDS	32179116	32179169	.	+	0	Parent=Os03t0776000-01
Chr03	irgsp1_rep	CDS	32179261	32179389	.	+	0	Parent=Os03t0776000-01
Chr03	irgsp1_rep	CDS	32179892	32179955	.	+	0	Parent=Os03t0776000-01
Chr03	irgsp1_rep	CDS	32180062	32180135	.	+	2	Parent=Os03t0776000-01
Chr03	irgsp1_rep	CDS	32180221	32180274	.	+	0	Parent=Os03t0776000-01
Chr03	irgsp1_rep	CDS	32180379	32180447	.	+	0	Parent=Os03t0776000-01
Chr03	irgsp1_rep	CDS	32181166	32181255	.	+	0	Parent=Os03t0776000-01
Chr03	irgsp1_rep	CDS	32181421	32181528	.	+	0	Parent=Os03t0776000-01
Chr03	irgsp1_rep	CDS	32181658	32181705	.	+	0	Parent=Os03t0776000-01
Chr03	irgsp1_rep	three_prime_UTR	32181706	32182089	.	+	.	Parent=Os03t0776000-01
Chr03	irgsp1_rep	mRNA	32182835	32183075	.	-	.	ID=Os03t0776100-00;Name=Os03t0776100-00;Locus_id=Os03g0776100;Note=Hypothetical conserved gene.;Transcript_evidence=CT835229 (DDBJ%2C Best hit);ORF_evidence=NP_001051435.1 (RefSeq);TENOR=Os03t0776100-00;KEGG=Os03t0776100-00
Chr03	irgsp1_rep	CDS	32183016	32183075	.	-	0	Parent=Os03t0776100-00
Chr03	irgsp1_rep	three_prime_UTR	32182835	32183015	.	-	.	Parent=Os03t0776100-00
Chr03	irgsp1_rep	mRNA	32183366	32185008	.	+	.	ID=Os03t0776150-00;Name=Os03t0776150-00;Locus_id=Os03g0776150;Note=Hypothetical protein.;Transcript_evidence=tplb0028p02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0776150-00
Chr03	irgsp1_rep	five_prime_UTR	32183366	32183749	.	+	.	Parent=Os03t0776150-00
Chr03	irgsp1_rep	five_prime_UTR	32183851	32183956	.	+	.	Parent=Os03t0776150-00
Chr03	irgsp1_rep	five_prime_UTR	32184144	32184223	.	+	.	Parent=Os03t0776150-00
Chr03	irgsp1_rep	CDS	32184224	32185008	.	+	0	Parent=Os03t0776150-00
Chr03	irgsp1_rep	mRNA	32193639	32195091	.	-	.	ID=Os03t0776400-01;Name=Os03t0776400-01;Locus_id=Os03g0776400;Note=Conserved hypothetical protein.;Transcript_evidence=AK106237 (DDBJ%2C Best hit);ORF_evidence=A3AN72 (UniProt);NIAS_FLcDNA=002-100-C07;Expression=AK106237;TENOR=Os03t0776400-01;KEGG=Os03t0776400-01
Chr03	irgsp1_rep	five_prime_UTR	32195037	32195091	.	-	.	Parent=Os03t0776400-01
Chr03	irgsp1_rep	CDS	32193759	32195036	.	-	0	Parent=Os03t0776400-01
Chr03	irgsp1_rep	three_prime_UTR	32193639	32193758	.	-	.	Parent=Os03t0776400-01
Chr03	irgsp1_rep	mRNA	32208931	32210830	.	+	.	ID=Os03t0776900-01;Name=Os03t0776900-01;Locus_id=Os03g0776900;Oryzabase Gene Symbol Synonym(s)=OsDjC35;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C35;Note=Similar to mitochondrial import inner membrane translocase subunit TIM14.;Transcript_evidence=AK107941 (DDBJ%2C Best hit);ORF_evidence=NP_001148450.1 (RefSeq);GO=Molecular Function: heat shock protein binding (GO:0031072);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623);NIAS_FLcDNA=002-135-B01;Oryzabase=12192;TENOR=Os03t0776900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	32208931	32208932	.	+	.	Parent=Os03t0776900-01
Chr03	irgsp1_rep	CDS	32208933	32209130	.	+	0	Parent=Os03t0776900-01
Chr03	irgsp1_rep	CDS	32210187	32210365	.	+	0	Parent=Os03t0776900-01
Chr03	irgsp1_rep	CDS	32210521	32210674	.	+	1	Parent=Os03t0776900-01
Chr03	irgsp1_rep	three_prime_UTR	32210675	32210830	.	+	.	Parent=Os03t0776900-01
Chr03	irgsp1_rep	mRNA	32234319	32236419	.	+	.	ID=Os03t0777000-01;Name=Os03t0777000-01;Locus_id=Os03g0777000;RAP-DB Gene Symbol Synonym(s)=ONAC066;CGSNL Gene Symbol=NAC66;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 66;Oryzabase Gene Symbol Synonym(s)=ONAC066%2C ONAC66;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 066%2C NAC domain-containing protein 66;Note=NAC transcription factor%2C Positive regulation of resistance to blast and bacterial blight;Transcript_evidence=AK073539;ORF_evidence=Q8S7I7;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=NAC domain superfamily (IPR036093),NAC domain (IPR003441);NIAS_FLcDNA=J033041C24;Manual Curation=December 28%2C 2018;Literature_PMID=30387038;Oryzabase=11494;Expression=AK073539;TENOR=Os03t0777000-01;KEGG=Os03t0777000-01;Subcellular location=nucleus (GO:0005634)
Chr03	irgsp1_rep	five_prime_UTR	32234319	32234452	.	+	.	Parent=Os03t0777000-01
Chr03	irgsp1_rep	CDS	32234453	32234705	.	+	0	Parent=Os03t0777000-01
Chr03	irgsp1_rep	CDS	32234817	32235121	.	+	2	Parent=Os03t0777000-01
Chr03	irgsp1_rep	CDS	32235708	32236238	.	+	0	Parent=Os03t0777000-01
Chr03	irgsp1_rep	three_prime_UTR	32236239	32236419	.	+	.	Parent=Os03t0777000-01
Chr03	irgsp1_rep	mRNA	32237960	32240951	.	-	.	ID=Os03t0777100-01;Name=Os03t0777100-01;Locus_id=Os03g0777100;Note=Conserved hypothetical protein.;Transcript_evidence=AK243261 (DDBJ%2C Best hit);ORF_evidence=Q8S7I6 (UniProt);NIAS_FLcDNA=J100049A20;TENOR=Os03t0777100-01;KEGG=Os03t0777100-01
Chr03	irgsp1_rep	five_prime_UTR	32240829	32240951	.	-	.	Parent=Os03t0777100-01
Chr03	irgsp1_rep	CDS	32240706	32240828	.	-	0	Parent=Os03t0777100-01
Chr03	irgsp1_rep	CDS	32240541	32240601	.	-	0	Parent=Os03t0777100-01
Chr03	irgsp1_rep	CDS	32240296	32240384	.	-	2	Parent=Os03t0777100-01
Chr03	irgsp1_rep	CDS	32239531	32239736	.	-	0	Parent=Os03t0777100-01
Chr03	irgsp1_rep	CDS	32238568	32239387	.	-	1	Parent=Os03t0777100-01
Chr03	irgsp1_rep	CDS	32238406	32238488	.	-	0	Parent=Os03t0777100-01
Chr03	irgsp1_rep	CDS	32238196	32238301	.	-	1	Parent=Os03t0777100-01
Chr03	irgsp1_rep	three_prime_UTR	32237960	32238195	.	-	.	Parent=Os03t0777100-01
Chr03	irgsp1_rep	mRNA	32244456	32246820	.	-	.	ID=Os03t0777500-01;Name=Os03t0777500-01;Locus_id=Os03g0777500;Note=Protein of unknown function DUF1068 family protein.;Transcript_evidence=AK062835 (DDBJ%2C Best hit);ORF_evidence=Q9ZVP1 (UniProt);InterPro=Protein of unknown function DUF1068 (IPR010471);NIAS_FLcDNA=001-107-G11;Expression=AK062835;TENOR=Os03t0777500-01;KEGG=Os03t0777500-01
Chr03	irgsp1_rep	five_prime_UTR	32246690	32246820	.	-	.	Parent=Os03t0777500-01
Chr03	irgsp1_rep	CDS	32246476	32246689	.	-	0	Parent=Os03t0777500-01
Chr03	irgsp1_rep	CDS	32244780	32245117	.	-	2	Parent=Os03t0777500-01
Chr03	irgsp1_rep	three_prime_UTR	32244456	32244779	.	-	.	Parent=Os03t0777500-01
Chr03	irgsp1_rep	mRNA	32249473	32251804	.	+	.	ID=Os03t0777600-01;Name=Os03t0777600-01;Locus_id=Os03g0777600;CGSNL Gene Symbol=GT8-40;CGSNL Gene Name=GLYCOSYLTRANSFERASE FAMILY 8 MEMBER 40;Oryzabase Gene Symbol Synonym(s)=OsGT8-40;Oryzabase Gene Name Synonym(s)=glycosyltransferase family 8 member 40;Note=Glycosyl transferase%2C family 8 domain containing protein.;Transcript_evidence=AK068624 (DDBJ%2C Best hit);ORF_evidence=Q8S7I3 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 8 (IPR002495);NIAS_FLcDNA=J013153F11;Oryzabase=23270;Expression=AK068624;TENOR=Os03t0777600-01;KEGG=Os03t0777600-01
Chr03	irgsp1_rep	five_prime_UTR	32249473	32249830	.	+	.	Parent=Os03t0777600-01
Chr03	irgsp1_rep	CDS	32249831	32249949	.	+	0	Parent=Os03t0777600-01
Chr03	irgsp1_rep	CDS	32250144	32250254	.	+	1	Parent=Os03t0777600-01
Chr03	irgsp1_rep	CDS	32250333	32250483	.	+	1	Parent=Os03t0777600-01
Chr03	irgsp1_rep	CDS	32251024	32251298	.	+	0	Parent=Os03t0777600-01
Chr03	irgsp1_rep	CDS	32251408	32251621	.	+	1	Parent=Os03t0777600-01
Chr03	irgsp1_rep	three_prime_UTR	32251622	32251804	.	+	.	Parent=Os03t0777600-01
Chr03	irgsp1_rep	mRNA	32251974	32255151	.	-	.	ID=Os03t0777700-01;Name=Os03t0777700-01;Locus_id=Os03g0777700;Note=FAR1 DNA binding domain domain containing protein.;Transcript_evidence=AK120460 (DDBJ%2C Best hit);ORF_evidence=Q8S7I2 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=FAR1 DNA binding domain (IPR004330),Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);NIAS_FLcDNA=J013106N05;TENOR=Os03t0777700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	32255150	32255151	.	-	.	Parent=Os03t0777700-01
Chr03	irgsp1_rep	CDS	32253088	32255149	.	-	0	Parent=Os03t0777700-01
Chr03	irgsp1_rep	CDS	32252888	32253012	.	-	2	Parent=Os03t0777700-01
Chr03	irgsp1_rep	CDS	32252677	32252748	.	-	0	Parent=Os03t0777700-01
Chr03	irgsp1_rep	CDS	32252505	32252585	.	-	0	Parent=Os03t0777700-01
Chr03	irgsp1_rep	CDS	32252109	32252219	.	-	0	Parent=Os03t0777700-01
Chr03	irgsp1_rep	three_prime_UTR	32251974	32252108	.	-	.	Parent=Os03t0777700-01
Chr03	irgsp1_rep	mRNA	32250630	32253260	.	-	.	ID=Os03t0777700-02;Name=Os03t0777700-02;Locus_id=Os03g0777700;Note=Similar to cDNA clone:J013106N05%2C full insert sequence.;Transcript_evidence=AK105528 (DDBJ%2C Best hit);ORF_evidence=Q8S7I2 (UniProt);NIAS_FLcDNA=001-127-G06;Expression=AK105528;TENOR=Os03t0777700-02;KEGG=Os03t0777700-02
Chr03	irgsp1_rep	five_prime_UTR	32253260	32253260	.	-	.	Parent=Os03t0777700-02
Chr03	irgsp1_rep	CDS	32253088	32253259	.	-	0	Parent=Os03t0777700-02
Chr03	irgsp1_rep	CDS	32252888	32253012	.	-	2	Parent=Os03t0777700-02
Chr03	irgsp1_rep	CDS	32252677	32252748	.	-	0	Parent=Os03t0777700-02
Chr03	irgsp1_rep	CDS	32252505	32252585	.	-	0	Parent=Os03t0777700-02
Chr03	irgsp1_rep	CDS	32252109	32252219	.	-	0	Parent=Os03t0777700-02
Chr03	irgsp1_rep	three_prime_UTR	32250630	32252108	.	-	.	Parent=Os03t0777700-02
Chr03	irgsp1_rep	mRNA	32267877	32272941	.	+	.	ID=Os03t0778000-01;Name=Os03t0778000-01;Locus_id=Os03g0778000;Note=Calmodulin binding protein-like family protein.;Transcript_evidence=AK110772 (DDBJ%2C Best hit);ORF_evidence=B9F5Z7 (UniProt);InterPro=Calmodulin binding protein-like (IPR012416);NIAS_FLcDNA=002-171-B02;Expression=AK110772;TENOR=Os03t0778000-01;KEGG=Os03t0778000-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	32267877	32267877	.	+	.	Parent=Os03t0778000-01
Chr03	irgsp1_rep	CDS	32267878	32268307	.	+	0	Parent=Os03t0778000-01
Chr03	irgsp1_rep	CDS	32268917	32269077	.	+	2	Parent=Os03t0778000-01
Chr03	irgsp1_rep	CDS	32269855	32270052	.	+	0	Parent=Os03t0778000-01
Chr03	irgsp1_rep	CDS	32270763	32270946	.	+	0	Parent=Os03t0778000-01
Chr03	irgsp1_rep	CDS	32271027	32271149	.	+	2	Parent=Os03t0778000-01
Chr03	irgsp1_rep	CDS	32271394	32271521	.	+	2	Parent=Os03t0778000-01
Chr03	irgsp1_rep	CDS	32271648	32271729	.	+	0	Parent=Os03t0778000-01
Chr03	irgsp1_rep	CDS	32271856	32271908	.	+	2	Parent=Os03t0778000-01
Chr03	irgsp1_rep	CDS	32272046	32272112	.	+	0	Parent=Os03t0778000-01
Chr03	irgsp1_rep	CDS	32272665	32272726	.	+	2	Parent=Os03t0778000-01
Chr03	irgsp1_rep	three_prime_UTR	32272727	32272941	.	+	.	Parent=Os03t0778000-01
Chr03	irgsp1_rep	mRNA	32273066	32274174	.	-	.	ID=Os03t0778100-01;Name=Os03t0778100-01;Locus_id=Os03g0778100;CGSNL Gene Symbol=PSAF;CGSNL Gene Name=PHOTOSYSTEM I SUBUNIT;Oryzabase Gene Symbol Synonym(s)=Usaf%2C OsPS1-F%2C PS1-F;Oryzabase Gene Name Synonym(s)=PSI subunit PsaF%2C photosystem I subunit PsaF%2C PHOTOSYSTEM 1-F subunit;Note=Similar to Photosystem-1 F subunit.;Transcript_evidence=AK060493 (DDBJ%2C Best hit);ORF_evidence=Q9ZSU5 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem I (GO:0009522),Cellular Component: photosystem I reaction center (GO:0009538);InterPro=Photosystem I PsaF%2C reaction centre subunit III (IPR003666);NIAS_FLcDNA=001-016-D02;Oryzabase=9588;TENOR=Os03t0778100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	32274107	32274174	.	-	.	Parent=Os03t0778100-01
Chr03	irgsp1_rep	CDS	32273396	32274106	.	-	0	Parent=Os03t0778100-01
Chr03	irgsp1_rep	three_prime_UTR	32273362	32273395	.	-	.	Parent=Os03t0778100-01
Chr03	irgsp1_rep	three_prime_UTR	32273066	32273249	.	-	.	Parent=Os03t0778100-01
Chr03	irgsp1_rep	mRNA	32273066	32274170	.	-	.	ID=Os03t0778100-02;Name=Os03t0778100-02;Locus_id=Os03g0778100;CGSNL Gene Symbol=PSAF;CGSNL Gene Name=PHOTOSYSTEM I SUBUNIT;Oryzabase Gene Symbol Synonym(s)=Usaf%2C OsPS1-F%2C PS1-F;Oryzabase Gene Name Synonym(s)=PSI subunit PsaF%2C photosystem I subunit PsaF%2C PHOTOSYSTEM 1-F subunit;Note=Similar to Photosystem-1 F subunit.;Transcript_evidence=AK069791 (DDBJ%2C Best hit);ORF_evidence=Q9ZSU5 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem I (GO:0009522),Cellular Component: photosystem I reaction center (GO:0009538);InterPro=Photosystem I PsaF%2C reaction centre subunit III (IPR003666);NIAS_FLcDNA=J023031N02;Oryzabase=9588;Expression=AK069791;TENOR=Os03t0778100-02;KEGG=Os03t0778100-02
Chr03	irgsp1_rep	five_prime_UTR	32274107	32274170	.	-	.	Parent=Os03t0778100-02
Chr03	irgsp1_rep	CDS	32273786	32274106	.	-	0	Parent=Os03t0778100-02
Chr03	irgsp1_rep	CDS	32273396	32273752	.	-	0	Parent=Os03t0778100-02
Chr03	irgsp1_rep	three_prime_UTR	32273357	32273395	.	-	.	Parent=Os03t0778100-02
Chr03	irgsp1_rep	three_prime_UTR	32273066	32273249	.	-	.	Parent=Os03t0778100-02
Chr03	irgsp1_rep	mRNA	32273066	32274162	.	-	.	ID=Os03t0778100-03;Name=Os03t0778100-03;Locus_id=Os03g0778100;RAP-DB Gene Symbol Synonym(s)=OsPS1-F;RAP-DB Gene Name Synonym(s)=Oryza sativa PHOTOSYSTEM 1-F subunit;CGSNL Gene Symbol=PSAF;CGSNL Gene Name=PHOTOSYSTEM I SUBUNIT;Oryzabase Gene Symbol Synonym(s)=Usaf%2C OsPS1-F%2C PS1-F;Oryzabase Gene Name Synonym(s)=PSI subunit PsaF%2C photosystem I subunit PsaF%2C PHOTOSYSTEM 1-F subunit;Note=Photosystem-1 F subunit%2C Modulation of chlorophyll content and photosynthetic electron transportrate%2C Regulation of plant growth and development;Transcript_evidence=AK059890;ORF_evidence=Q8S7H8;GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem I (GO:0009522),Cellular Component: photosystem I reaction center (GO:0009538);InterPro=Photosystem I PsaF%2C reaction centre subunit III superfamily (IPR036577),Photosystem I PsaF%2C reaction centre subunit III (IPR003666);NIAS_FLcDNA=006-208-C12;Manual Curation=December 13%2C 2017;Literature_PMID=29149369;Oryzabase=9588;Expression=AK059890;TENOR=Os03t0778100-03
Chr03	irgsp1_rep	five_prime_UTR	32274107	32274162	.	-	.	Parent=Os03t0778100-03
Chr03	irgsp1_rep	CDS	32273396	32274106	.	-	0	Parent=Os03t0778100-03
Chr03	irgsp1_rep	three_prime_UTR	32273357	32273395	.	-	.	Parent=Os03t0778100-03
Chr03	irgsp1_rep	three_prime_UTR	32273066	32273249	.	-	.	Parent=Os03t0778100-03
Chr03	irgsp1_rep	mRNA	32307046	32308070	.	+	.	ID=Os03t0778400-00;Name=Os03t0778400-00;Locus_id=Os03g0778400;Note=Similar to predicted protein.;Transcript_evidence=CT835114 (DDBJ%2C Best hit);ORF_evidence=NP_001051445.1 (RefSeq);TENOR=Os03t0778400-00;KEGG=Os03t0778400-00
Chr03	irgsp1_rep	five_prime_UTR	32307046	32307112	.	+	.	Parent=Os03t0778400-00
Chr03	irgsp1_rep	CDS	32307113	32307733	.	+	0	Parent=Os03t0778400-00
Chr03	irgsp1_rep	three_prime_UTR	32307734	32307870	.	+	.	Parent=Os03t0778400-00
Chr03	irgsp1_rep	three_prime_UTR	32307889	32308070	.	+	.	Parent=Os03t0778400-00
Chr03	irgsp1_rep	mRNA	32325421	32327052	.	-	.	ID=Os03t0779000-01;Name=Os03t0779000-01;Locus_id=Os03g0779000;Note=Protein of unknown function DUF295 family protein.;Transcript_evidence=AK108586 (DDBJ%2C Best hit);ORF_evidence=Q9AY82 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174);NIAS_FLcDNA=002-146-B01;Expression=AK108586;TENOR=Os03t0779000-01;KEGG=Os03t0779000-01
Chr03	irgsp1_rep	five_prime_UTR	32326779	32327052	.	-	.	Parent=Os03t0779000-01
Chr03	irgsp1_rep	five_prime_UTR	32326446	32326646	.	-	.	Parent=Os03t0779000-01
Chr03	irgsp1_rep	CDS	32325552	32326445	.	-	0	Parent=Os03t0779000-01
Chr03	irgsp1_rep	three_prime_UTR	32325421	32325551	.	-	.	Parent=Os03t0779000-01
Chr03	irgsp1_rep	mRNA	32325402	32327027	.	-	.	ID=Os03t0779000-02;Name=Os03t0779000-02;Locus_id=Os03g0779000;Note=Protein of unknown function DUF295 family protein.;Transcript_evidence=AK122026 (DDBJ%2C Best hit);ORF_evidence=Q9AY82 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174);NIAS_FLcDNA=J033112B02;TENOR=Os03t0779000-02
Chr03	irgsp1_rep	five_prime_UTR	32326779	32327027	.	-	.	Parent=Os03t0779000-02
Chr03	irgsp1_rep	five_prime_UTR	32326446	32326646	.	-	.	Parent=Os03t0779000-02
Chr03	irgsp1_rep	CDS	32325552	32326445	.	-	0	Parent=Os03t0779000-02
Chr03	irgsp1_rep	three_prime_UTR	32325402	32325551	.	-	.	Parent=Os03t0779000-02
Chr03	irgsp1_rep	mRNA	32328398	32328960	.	+	.	ID=Os03t0779300-01;Name=Os03t0779300-01;Locus_id=Os03g0779300;Note=Hypothetical gene.;Transcript_evidence=AK109183 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=002-156-A06;Expression=AK109183;TENOR=Os03t0779300-01;KEGG=Os03t0779300-01
Chr03	irgsp1_rep	CDS	32328398	32328549	.	+	0	Parent=Os03t0779300-01
Chr03	irgsp1_rep	CDS	32328627	32328729	.	+	1	Parent=Os03t0779300-01
Chr03	irgsp1_rep	three_prime_UTR	32328730	32328960	.	+	.	Parent=Os03t0779300-01
Chr03	irgsp1_rep	mRNA	32334976	32335828	.	+	.	ID=Os03t0779500-01;Name=Os03t0779500-01;Locus_id=Os03g0779500;Note=Hypothetical protein.;Transcript_evidence=AK108685 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-149-C03;Expression=AK108685;TENOR=Os03t0779500-01;KEGG=Os03t0779500-01
Chr03	irgsp1_rep	five_prime_UTR	32334976	32335242	.	+	.	Parent=Os03t0779500-01
Chr03	irgsp1_rep	CDS	32335243	32335701	.	+	0	Parent=Os03t0779500-01
Chr03	irgsp1_rep	three_prime_UTR	32335702	32335828	.	+	.	Parent=Os03t0779500-01
Chr03	irgsp1_rep	mRNA	32342031	32343059	.	-	.	ID=Os03t0779800-00;Name=Os03t0779800-00;Locus_id=Os03g0779800;Note=Protein of unknown function DUF295 domain containing protein.;Transcript_evidence=tplb0004o19 (Wheat FLcDNA);ORF_evidence=Q9AY78 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174);TENOR=Os03t0779800-00
Chr03	irgsp1_rep	CDS	32342031	32343059	.	-	0	Parent=Os03t0779800-00
Chr03	irgsp1_rep	mRNA	32354145	32354714	.	-	.	ID=Os03t0780200-01;Name=Os03t0780200-01;Locus_id=Os03g0780200;Note=Conserved hypothetical protein.;Transcript_evidence=AK107920 (DDBJ%2C Best hit);ORF_evidence=A2XMI6 (UniProt);NIAS_FLcDNA=002-134-H03;Expression=AK107920;TENOR=Os03t0780200-01;KEGG=Os03t0780200-01
Chr03	irgsp1_rep	five_prime_UTR	32354560	32354714	.	-	.	Parent=Os03t0780200-01
Chr03	irgsp1_rep	CDS	32354344	32354559	.	-	0	Parent=Os03t0780200-01
Chr03	irgsp1_rep	three_prime_UTR	32354145	32354343	.	-	.	Parent=Os03t0780200-01
Chr03	irgsp1_rep	mRNA	32359318	32359650	.	+	.	ID=Os03t0780350-00;Name=Os03t0780350-00;Locus_id=Os03g0780350;Note=Similar to SAUR1 - auxin-responsive SAUR family member.;Transcript_evidence=EU974244 (DDBJ);ORF_evidence=NP_001152203.1 (RefSeq);InterPro=Auxin responsive SAUR protein (IPR003676);TENOR=Os03t0780350-00
Chr03	irgsp1_rep	five_prime_UTR	32359318	32359383	.	+	.	Parent=Os03t0780350-00
Chr03	irgsp1_rep	CDS	32359384	32359650	.	+	0	Parent=Os03t0780350-00
Chr03	irgsp1_rep	mRNA	32360719	32363837	.	-	.	ID=Os03t0780400-01;Name=Os03t0780400-01;Locus_id=Os03g0780400;RAP-DB Gene Symbol Synonym(s)=OsADF2;RAP-DB Gene Name Synonym(s)=actin depolymerizing factor 2;CGSNL Gene Symbol=ADF2;CGSNL Gene Name=ACTIN DEPOLYMERIZING FACTOR 2;Oryzabase Gene Symbol Synonym(s)=OsADF;Oryzabase Gene Name Synonym(s)=actin depolymerizing factor 2;Note=Actin depolymerizing factor%2C Actin-binding protein%2C Abiotic stress response;Transcript_evidence=AK073162,AK061347;ORF_evidence=Q9AY76;GO=Biological Process: actin filament depolymerization (GO:0030042),Molecular Function: actin binding (GO:0003779),Cellular Component: intracellular (GO:0005622),Cellular Component: actin cytoskeleton (GO:0015629);InterPro=ADF-H/Gelsolin-like domain superfamily (IPR029006),ADF/Cofilin (IPR017904),Actin-depolymerising factor homology domain (IPR002108);NIAS_FLcDNA=J033024B06,006-303-F01;Manual Curation=August 27%2C 2018;Literature_PMID=30031604,29851294,24279948;Oryzabase=12501;Expression=AK073162;TENOR=Os03t0780400-01;KEGG=Os03t0780400-01
Chr03	irgsp1_rep	five_prime_UTR	32363626	32363837	.	-	.	Parent=Os03t0780400-01
Chr03	irgsp1_rep	CDS	32363605	32363625	.	-	0	Parent=Os03t0780400-01
Chr03	irgsp1_rep	CDS	32361546	32361811	.	-	0	Parent=Os03t0780400-01
Chr03	irgsp1_rep	CDS	32361021	32361171	.	-	1	Parent=Os03t0780400-01
Chr03	irgsp1_rep	three_prime_UTR	32360719	32361020	.	-	.	Parent=Os03t0780400-01
Chr03	irgsp1_rep	mRNA	32365754	32371146	.	+	.	ID=Os03t0780500-01;Name=Os03t0780500-01;Locus_id=Os03g0780500;Oryzabase Gene Symbol Synonym(s)=CBSIMPDH1%2C OsCBSIMPDH1%2C OsCBSIMPDH1a%2C OsCBSIMPDH1b%2C IMPDH%2C OsIMPDH;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSIMPDH1%2C CBS domain containing protein OsCBSIMPDH1%2C IMP dehydrogenase;Note=Similar to inosine-5-monophosphate dehydrogenase 2.;Transcript_evidence=AK065289 (DDBJ%2C Best hit);ORF_evidence=C5WZ26 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: IMP dehydrogenase activity (GO:0003938),Molecular Function: protein binding (GO:0005515),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Cystathionine beta-synthase%2C core (IPR000644),IMP dehydrogenase/GMP reductase (IPR001093),IMP dehydrogenase (IPR005990),Aldolase-type TIM barrel (IPR013785),IMP dehydrogenase / GMP reductase%2C conserved site (IPR015875),IMP dehydrogenase-related (IPR018529);NIAS_FLcDNA=J013002M23;Oryzabase=10346;Expression=AK065289;TENOR=Os03t0780500-01;KEGG=Os03t0780500-01 (EC:1.1.1.205)
Chr03	irgsp1_rep	five_prime_UTR	32365754	32365839	.	+	.	Parent=Os03t0780500-01
Chr03	irgsp1_rep	CDS	32365840	32366835	.	+	0	Parent=Os03t0780500-01
Chr03	irgsp1_rep	CDS	32368354	32368533	.	+	0	Parent=Os03t0780500-01
Chr03	irgsp1_rep	CDS	32369636	32369938	.	+	0	Parent=Os03t0780500-01
Chr03	irgsp1_rep	three_prime_UTR	32369939	32371146	.	+	.	Parent=Os03t0780500-01
Chr03	irgsp1_rep	mRNA	32366682	32371146	.	+	.	ID=Os03t0780500-02;Name=Os03t0780500-02;Locus_id=Os03g0780500;Oryzabase Gene Symbol Synonym(s)=CBSIMPDH1%2C OsCBSIMPDH1%2C OsCBSIMPDH1a%2C OsCBSIMPDH1b%2C IMPDH%2C OsIMPDH;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSIMPDH1%2C CBS domain containing protein OsCBSIMPDH1%2C IMP dehydrogenase;Note=Similar to Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) (IMP dehydrogenase) (IMPDH) (IMPD).;Transcript_evidence=AK061643 (DDBJ%2C Best hit);ORF_evidence=C5WZ26 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: IMP dehydrogenase activity (GO:0003938),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=IMP dehydrogenase/GMP reductase (IPR001093),Aldolase-type TIM barrel (IPR013785),IMP dehydrogenase / GMP reductase%2C conserved site (IPR015875),IMP dehydrogenase-related (IPR018529);NIAS_FLcDNA=001-036-B05;Oryzabase=10346;Expression=AK061643;TENOR=Os03t0780500-02;KEGG=Os03t0780500-02 (EC:1.1.1.205)
Chr03	irgsp1_rep	five_prime_UTR	32366682	32366682	.	+	.	Parent=Os03t0780500-02
Chr03	irgsp1_rep	CDS	32366683	32366835	.	+	0	Parent=Os03t0780500-02
Chr03	irgsp1_rep	CDS	32368354	32368533	.	+	0	Parent=Os03t0780500-02
Chr03	irgsp1_rep	CDS	32369636	32369893	.	+	0	Parent=Os03t0780500-02
Chr03	irgsp1_rep	CDS	32370722	32370793	.	+	0	Parent=Os03t0780500-02
Chr03	irgsp1_rep	three_prime_UTR	32370794	32371146	.	+	.	Parent=Os03t0780500-02
Chr03	irgsp1_rep	mRNA	32371874	32374406	.	-	.	ID=Os03t0780550-00;Name=Os03t0780550-00;Locus_id=Os03g0780550;Note=Hypothetical protein.;Transcript_evidence=tplb0045b10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0780550-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	32373733	32374406	.	-	.	Parent=Os03t0780550-00
Chr03	irgsp1_rep	five_prime_UTR	32373418	32373635	.	-	.	Parent=Os03t0780550-00
Chr03	irgsp1_rep	CDS	32373366	32373417	.	-	0	Parent=Os03t0780550-00
Chr03	irgsp1_rep	CDS	32371874	32372259	.	-	2	Parent=Os03t0780550-00
Chr03	irgsp1_rep	mRNA	32371758	32374697	.	+	.	ID=Os03t0780600-01;Name=Os03t0780600-01;Locus_id=Os03g0780600;CGSNL Gene Symbol=TUB7;CGSNL Gene Name=BETA-TUBULIN 7;Oryzabase Gene Symbol Synonym(s)=OsTUB7%2C TUBB7%2C pTUB22;Oryzabase Gene Name Synonym(s)=beta tubulin 7%2C Tubulin beta-7 chain%2C Beta-7-tubulin;Note=Tubulin beta-1 chain (Beta-1 tubulin).;Transcript_evidence=AK120180 (DDBJ%2C Best hit);ORF_evidence=P37832 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: microtubule-based process (GO:0007017),Biological Process: microtubule-based movement (GO:0007018),Biological Process: protein polymerization (GO:0051258),Cellular Component: microtubule (GO:0005874),Cellular Component: protein complex (GO:0043234),Molecular Function: GTPase activity (GO:0003924),Molecular Function: structural molecule activity (GO:0005198),Molecular Function: GTP binding (GO:0005525);InterPro=Tubulin (IPR000217),Beta tubulin (IPR002453),Tubulin/FtsZ%2C GTPase domain (IPR003008),Tubulin/FtsZ%2C C-terminal (IPR008280),Beta tubulin%2C autoregulation binding site (IPR013838),Tubulin%2C conserved site (IPR017975),Tubulin/FtsZ%2C 2-layer sandwich domain (IPR018316),Tubulin%2C C-terminal (IPR023123);NIAS_FLcDNA=J013033M18;Oryzabase=2962;Expression=AK120180;TENOR=Os03t0780600-01;KEGG=Os03t0780600-01
Chr03	irgsp1_rep	five_prime_UTR	32371758	32371873	.	+	.	Parent=Os03t0780600-01
Chr03	irgsp1_rep	CDS	32371874	32372267	.	+	0	Parent=Os03t0780600-01
Chr03	irgsp1_rep	CDS	32373372	32373641	.	+	2	Parent=Os03t0780600-01
Chr03	irgsp1_rep	CDS	32373740	32374410	.	+	2	Parent=Os03t0780600-01
Chr03	irgsp1_rep	three_prime_UTR	32374411	32374697	.	+	.	Parent=Os03t0780600-01
Chr03	irgsp1_rep	mRNA	32374326	32374722	.	+	.	ID=Os03t0780600-02;Name=Os03t0780600-02;Locus_id=Os03g0780600;CGSNL Gene Symbol=TUB7;CGSNL Gene Name=BETA-TUBULIN 7;Oryzabase Gene Symbol Synonym(s)=OsTUB7%2C TUBB7%2C pTUB22;Oryzabase Gene Name Synonym(s)=beta tubulin 7%2C Tubulin beta-7 chain%2C Beta-7-tubulin;Note=Non-protein coding transcript.;Transcript_evidence=AK061888 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-041-F12;Oryzabase=2962;TENOR=Os03t0780600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	exon	32374326	32374722	.	+	.	Parent=Os03t0780600-02
Chr03	irgsp1_rep	mRNA	32375907	32378463	.	+	.	ID=Os03t0780800-01;Name=Os03t0780800-01;Locus_id=Os03g0780800;RAP-DB Gene Symbol Synonym(s)=FAH2%2C Os-FAH2%2C OsFAH2;RAP-DB Gene Name Synonym(s)=FATTY ACID 2-HYDROXYLASE 2%2C fatty acid 2-hydroxylase 2;CGSNL Gene Symbol=FAH2;CGSNL Gene Name=FATTY ACID 2-HYDROXYLASE 2;Oryzabase Gene Symbol Synonym(s)=Os-FAH2%2C OsFAH2;Oryzabase Gene Name Synonym(s)=fatty acid 2-hydroxylase 2;Note=Fatty acid 2-hydroxylase%2C Resistance to rice blast fungus infection;Transcript_evidence=AK103085;ORF_evidence=Q9AY73;GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Fatty acid hydroxylase (IPR006694);NIAS_FLcDNA=J033118H09;Manual Curation=September 21%2C 2016;Literature_PMID=27465023;Oryzabase=21332;Expression=AK103085;TENOR=Os03t0780800-01;KEGG=Os03t0780800-01
Chr03	irgsp1_rep	five_prime_UTR	32375907	32376110	.	+	.	Parent=Os03t0780800-01
Chr03	irgsp1_rep	five_prime_UTR	32376790	32376804	.	+	.	Parent=Os03t0780800-01
Chr03	irgsp1_rep	CDS	32376805	32376855	.	+	0	Parent=Os03t0780800-01
Chr03	irgsp1_rep	CDS	32377123	32377215	.	+	0	Parent=Os03t0780800-01
Chr03	irgsp1_rep	CDS	32377287	32377483	.	+	0	Parent=Os03t0780800-01
Chr03	irgsp1_rep	CDS	32377569	32377674	.	+	1	Parent=Os03t0780800-01
Chr03	irgsp1_rep	CDS	32377803	32377949	.	+	0	Parent=Os03t0780800-01
Chr03	irgsp1_rep	CDS	32378049	32378168	.	+	0	Parent=Os03t0780800-01
Chr03	irgsp1_rep	three_prime_UTR	32378169	32378463	.	+	.	Parent=Os03t0780800-01
Chr03	irgsp1_rep	mRNA	32376007	32378380	.	+	.	ID=Os03t0780800-02;Name=Os03t0780800-02;Locus_id=Os03g0780800;CGSNL Gene Symbol=FAH2;CGSNL Gene Name=FATTY ACID 2-HYDROXYLASE 2;Oryzabase Gene Symbol Synonym(s)=Os-FAH2%2C OsFAH2;Oryzabase Gene Name Synonym(s)=fatty acid 2-hydroxylase 2;Note=Fatty acid hydroxylase domain containing protein.;Transcript_evidence=AK059874 (DDBJ%2C Best hit);ORF_evidence=NP_001149139.1 (RefSeq);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Fatty acid hydroxylase (IPR006694);NIAS_FLcDNA=006-207-F06;Oryzabase=21332;Expression=AK059874;TENOR=Os03t0780800-02;KEGG=Os03t0780800-02
Chr03	irgsp1_rep	five_prime_UTR	32376007	32376110	.	+	.	Parent=Os03t0780800-02
Chr03	irgsp1_rep	five_prime_UTR	32376790	32376804	.	+	.	Parent=Os03t0780800-02
Chr03	irgsp1_rep	CDS	32376805	32376855	.	+	0	Parent=Os03t0780800-02
Chr03	irgsp1_rep	CDS	32377123	32377215	.	+	0	Parent=Os03t0780800-02
Chr03	irgsp1_rep	CDS	32377287	32377483	.	+	0	Parent=Os03t0780800-02
Chr03	irgsp1_rep	CDS	32377569	32377674	.	+	1	Parent=Os03t0780800-02
Chr03	irgsp1_rep	CDS	32377803	32377949	.	+	0	Parent=Os03t0780800-02
Chr03	irgsp1_rep	CDS	32378049	32378168	.	+	0	Parent=Os03t0780800-02
Chr03	irgsp1_rep	three_prime_UTR	32378169	32378380	.	+	.	Parent=Os03t0780800-02
Chr03	irgsp1_rep	mRNA	32379925	32383791	.	-	.	ID=Os03t0780900-01;Name=Os03t0780900-01;Locus_id=Os03g0780900;Note=Protein of unknown function DUF858%2C methyltransferase-like family protein.;Transcript_evidence=AK100619 (DDBJ%2C Best hit);ORF_evidence=A2XMJ1 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Protein of unknown function DUF858%2C methyltransferase-like (IPR008576);NIAS_FLcDNA=J023108E24;Expression=AK100619;TENOR=Os03t0780900-01;KEGG=Os03t0780900-01
Chr03	irgsp1_rep	five_prime_UTR	32383714	32383791	.	-	.	Parent=Os03t0780900-01
Chr03	irgsp1_rep	CDS	32383492	32383713	.	-	0	Parent=Os03t0780900-01
Chr03	irgsp1_rep	CDS	32383233	32383371	.	-	0	Parent=Os03t0780900-01
Chr03	irgsp1_rep	CDS	32383053	32383111	.	-	2	Parent=Os03t0780900-01
Chr03	irgsp1_rep	CDS	32382633	32382752	.	-	0	Parent=Os03t0780900-01
Chr03	irgsp1_rep	CDS	32382432	32382533	.	-	0	Parent=Os03t0780900-01
Chr03	irgsp1_rep	CDS	32381824	32381878	.	-	0	Parent=Os03t0780900-01
Chr03	irgsp1_rep	CDS	32381623	32381720	.	-	2	Parent=Os03t0780900-01
Chr03	irgsp1_rep	CDS	32381429	32381540	.	-	0	Parent=Os03t0780900-01
Chr03	irgsp1_rep	CDS	32380934	32381125	.	-	2	Parent=Os03t0780900-01
Chr03	irgsp1_rep	CDS	32380703	32380845	.	-	2	Parent=Os03t0780900-01
Chr03	irgsp1_rep	three_prime_UTR	32379925	32380702	.	-	.	Parent=Os03t0780900-01
Chr03	irgsp1_rep	mRNA	32384836	32388229	.	-	.	ID=Os03t0781000-01;Name=Os03t0781000-01;Locus_id=Os03g0781000;Note=Conserved hypothetical protein.;Transcript_evidence=AK065910 (DDBJ%2C Best hit);ORF_evidence=Q9AY71 (UniProt);NIAS_FLcDNA=J013045L16;TENOR=Os03t0781000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	32388092	32388229	.	-	.	Parent=Os03t0781000-01
Chr03	irgsp1_rep	CDS	32387645	32388091	.	-	0	Parent=Os03t0781000-01
Chr03	irgsp1_rep	three_prime_UTR	32387173	32387644	.	-	.	Parent=Os03t0781000-01
Chr03	irgsp1_rep	three_prime_UTR	32387017	32387070	.	-	.	Parent=Os03t0781000-01
Chr03	irgsp1_rep	three_prime_UTR	32386549	32386669	.	-	.	Parent=Os03t0781000-01
Chr03	irgsp1_rep	three_prime_UTR	32386361	32386423	.	-	.	Parent=Os03t0781000-01
Chr03	irgsp1_rep	three_prime_UTR	32386038	32386292	.	-	.	Parent=Os03t0781000-01
Chr03	irgsp1_rep	three_prime_UTR	32385768	32385914	.	-	.	Parent=Os03t0781000-01
Chr03	irgsp1_rep	three_prime_UTR	32385658	32385685	.	-	.	Parent=Os03t0781000-01
Chr03	irgsp1_rep	three_prime_UTR	32385508	32385578	.	-	.	Parent=Os03t0781000-01
Chr03	irgsp1_rep	three_prime_UTR	32385273	32385332	.	-	.	Parent=Os03t0781000-01
Chr03	irgsp1_rep	three_prime_UTR	32384836	32385192	.	-	.	Parent=Os03t0781000-01
Chr03	irgsp1_rep	mRNA	32389024	32391628	.	+	.	ID=Os03t0781100-00;Name=Os03t0781100-00;Locus_id=Os03g0781100;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=EU950024 (DDBJ);ORF_evidence=Q9AY70 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os03t0781100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	32389024	32389069	.	+	.	Parent=Os03t0781100-00
Chr03	irgsp1_rep	CDS	32389070	32389359	.	+	0	Parent=Os03t0781100-00
Chr03	irgsp1_rep	CDS	32389507	32391628	.	+	1	Parent=Os03t0781100-00
Chr03	irgsp1_rep	mRNA	32392261	32397465	.	+	.	ID=Os03t0781200-01;Name=Os03t0781200-01;Locus_id=Os03g0781200;Note=Hypothetical protein.;Transcript_evidence=AK110946 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-173-H06;Expression=AK110946;TENOR=Os03t0781200-01;KEGG=Os03t0781200-01
Chr03	irgsp1_rep	five_prime_UTR	32392261	32392331	.	+	.	Parent=Os03t0781200-01
Chr03	irgsp1_rep	five_prime_UTR	32392997	32393170	.	+	.	Parent=Os03t0781200-01
Chr03	irgsp1_rep	five_prime_UTR	32393249	32393299	.	+	.	Parent=Os03t0781200-01
Chr03	irgsp1_rep	five_prime_UTR	32393760	32394032	.	+	.	Parent=Os03t0781200-01
Chr03	irgsp1_rep	five_prime_UTR	32396111	32396334	.	+	.	Parent=Os03t0781200-01
Chr03	irgsp1_rep	CDS	32396335	32396565	.	+	0	Parent=Os03t0781200-01
Chr03	irgsp1_rep	three_prime_UTR	32396566	32397465	.	+	.	Parent=Os03t0781200-01
Chr03	irgsp1_rep	mRNA	32393527	32394430	.	-	.	ID=Os03t0781300-01;Name=Os03t0781300-01;Locus_id=Os03g0781300;Note=Conserved hypothetical protein.;Transcript_evidence=AK120661 (DDBJ%2C Best hit);ORF_evidence=F2EFE7 (UniProt);NIAS_FLcDNA=J013158J07;Expression=AK120661;TENOR=Os03t0781300-01;KEGG=Os03t0781300-01
Chr03	irgsp1_rep	five_prime_UTR	32394423	32394430	.	-	.	Parent=Os03t0781300-01
Chr03	irgsp1_rep	CDS	32394261	32394422	.	-	0	Parent=Os03t0781300-01
Chr03	irgsp1_rep	CDS	32393733	32393903	.	-	0	Parent=Os03t0781300-01
Chr03	irgsp1_rep	three_prime_UTR	32393527	32393732	.	-	.	Parent=Os03t0781300-01
Chr03	irgsp1_rep	mRNA	32394938	32397257	.	-	.	ID=Os03t0781400-01;Name=Os03t0781400-01;Locus_id=Os03g0781400;Oryzabase Gene Name Synonym(s)=Rib-5-P isomerase;Note=Ribose 5-phosphate isomerase family protein.;Transcript_evidence=AK071970 (DDBJ%2C Best hit);ORF_evidence=NP_001151663.1 (RefSeq);GO=Biological Process: pentose-phosphate shunt%2C non-oxidative branch (GO:0009052),Molecular Function: ribose-5-phosphate isomerase activity (GO:0004751);InterPro=Ribose 5-phosphate isomerase%2C type A (IPR004788);NIAS_FLcDNA=J013082L17;Oryzabase=12461;Expression=AK071970;TENOR=Os03t0781400-01;KEGG=Os03t0781400-01
Chr03	irgsp1_rep	five_prime_UTR	32397168	32397257	.	-	.	Parent=Os03t0781400-01
Chr03	irgsp1_rep	CDS	32396982	32397167	.	-	0	Parent=Os03t0781400-01
Chr03	irgsp1_rep	CDS	32396758	32396885	.	-	0	Parent=Os03t0781400-01
Chr03	irgsp1_rep	CDS	32396547	32396616	.	-	1	Parent=Os03t0781400-01
Chr03	irgsp1_rep	CDS	32396352	32396459	.	-	0	Parent=Os03t0781400-01
Chr03	irgsp1_rep	CDS	32396146	32396241	.	-	0	Parent=Os03t0781400-01
Chr03	irgsp1_rep	CDS	32396008	32396064	.	-	0	Parent=Os03t0781400-01
Chr03	irgsp1_rep	CDS	32395763	32395880	.	-	0	Parent=Os03t0781400-01
Chr03	irgsp1_rep	CDS	32395618	32395684	.	-	2	Parent=Os03t0781400-01
Chr03	irgsp1_rep	CDS	32395320	32395389	.	-	1	Parent=Os03t0781400-01
Chr03	irgsp1_rep	three_prime_UTR	32394938	32395319	.	-	.	Parent=Os03t0781400-01
Chr03	irgsp1_rep	mRNA	32394982	32397219	.	-	.	ID=Os03t0781400-02;Name=Os03t0781400-02;Locus_id=Os03g0781400;Oryzabase Gene Name Synonym(s)=Rib-5-P isomerase;Note=Similar to ribose-5-phosphate isomerase.;Transcript_evidence=AK065577 (DDBJ%2C Best hit);ORF_evidence=NP_001151663.1 (RefSeq);GO=Biological Process: pentose-phosphate shunt%2C non-oxidative branch (GO:0009052),Molecular Function: ribose-5-phosphate isomerase activity (GO:0004751);InterPro=Ribose 5-phosphate isomerase%2C type A (IPR004788);NIAS_FLcDNA=J013026J06;Oryzabase=12461;TENOR=Os03t0781400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	32397168	32397219	.	-	.	Parent=Os03t0781400-02
Chr03	irgsp1_rep	CDS	32396982	32397167	.	-	0	Parent=Os03t0781400-02
Chr03	irgsp1_rep	CDS	32396758	32396885	.	-	0	Parent=Os03t0781400-02
Chr03	irgsp1_rep	CDS	32396547	32396616	.	-	1	Parent=Os03t0781400-02
Chr03	irgsp1_rep	CDS	32396411	32396422	.	-	0	Parent=Os03t0781400-02
Chr03	irgsp1_rep	three_prime_UTR	32396352	32396410	.	-	.	Parent=Os03t0781400-02
Chr03	irgsp1_rep	three_prime_UTR	32396146	32396241	.	-	.	Parent=Os03t0781400-02
Chr03	irgsp1_rep	three_prime_UTR	32396008	32396064	.	-	.	Parent=Os03t0781400-02
Chr03	irgsp1_rep	three_prime_UTR	32395763	32395880	.	-	.	Parent=Os03t0781400-02
Chr03	irgsp1_rep	three_prime_UTR	32395618	32395684	.	-	.	Parent=Os03t0781400-02
Chr03	irgsp1_rep	three_prime_UTR	32394982	32395389	.	-	.	Parent=Os03t0781400-02
Chr03	irgsp1_rep	mRNA	32398404	32399832	.	-	.	ID=Os03t0781501-01;Name=Os03t0781501-01;Locus_id=Os03g0781501;Note=Non-protein coding transcript.;Transcript_evidence=AK243070 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J100017E12;TENOR=Os03t0781501-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	exon	32399727	32399832	.	-	.	Parent=Os03t0781501-01
Chr03	irgsp1_rep	exon	32398404	32398696	.	-	.	Parent=Os03t0781501-01
Chr03	irgsp1_rep	mRNA	32400270	32401033	.	-	.	ID=Os03t0781600-01;Name=Os03t0781600-01;Locus_id=Os03g0781600;Note=Conserved hypothetical protein.;Transcript_evidence=AK064719 (DDBJ%2C Best hit);ORF_evidence=A2XMJ5 (UniProt);NIAS_FLcDNA=002-118-E08;Expression=AK064719;TENOR=Os03t0781600-01;KEGG=Os03t0781600-01
Chr03	irgsp1_rep	five_prime_UTR	32400980	32401033	.	-	.	Parent=Os03t0781600-01
Chr03	irgsp1_rep	CDS	32400464	32400979	.	-	0	Parent=Os03t0781600-01
Chr03	irgsp1_rep	three_prime_UTR	32400270	32400463	.	-	.	Parent=Os03t0781600-01
Chr03	irgsp1_rep	mRNA	32401996	32404752	.	-	.	ID=Os03t0781700-01;Name=Os03t0781700-01;Locus_id=Os03g0781700;Note=Reticulon family protein.;Transcript_evidence=AK103023 (DDBJ%2C Best hit),AK103025 (DDBJ%2C Best hit);ORF_evidence=B6T4A9 (UniProt);GO=Cellular Component: endoplasmic reticulum (GO:0005783);InterPro=Reticulon (IPR003388);NIAS_FLcDNA=J033117A12,J033117B12;Expression=AK103023;TENOR=Os03t0781700-01;KEGG=Os03t0781700-01
Chr03	irgsp1_rep	five_prime_UTR	32404619	32404752	.	-	.	Parent=Os03t0781700-01
Chr03	irgsp1_rep	five_prime_UTR	32403450	32403463	.	-	.	Parent=Os03t0781700-01
Chr03	irgsp1_rep	CDS	32403269	32403449	.	-	0	Parent=Os03t0781700-01
Chr03	irgsp1_rep	CDS	32402971	32403151	.	-	2	Parent=Os03t0781700-01
Chr03	irgsp1_rep	CDS	32402744	32402885	.	-	1	Parent=Os03t0781700-01
Chr03	irgsp1_rep	CDS	32402516	32402585	.	-	0	Parent=Os03t0781700-01
Chr03	irgsp1_rep	CDS	32402190	32402359	.	-	2	Parent=Os03t0781700-01
Chr03	irgsp1_rep	three_prime_UTR	32401996	32402189	.	-	.	Parent=Os03t0781700-01
Chr03	irgsp1_rep	mRNA	32402162	32403110	.	+	.	ID=Os03t0781750-00;Name=Os03t0781750-00;Locus_id=Os03g0781750;Note=Non-protein coding transcript.;Transcript_evidence=BT019310 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0781750-00
Chr03	irgsp1_rep	exon	32402162	32402378	.	+	.	Parent=Os03t0781750-00
Chr03	irgsp1_rep	exon	32402531	32402572	.	+	.	Parent=Os03t0781750-00
Chr03	irgsp1_rep	exon	32402734	32402868	.	+	.	Parent=Os03t0781750-00
Chr03	irgsp1_rep	exon	32402951	32403110	.	+	.	Parent=Os03t0781750-00
Chr03	irgsp1_rep	mRNA	32423241	32424487	.	+	.	ID=Os03t0782200-01;Name=Os03t0782200-01;Locus_id=Os03g0782200;Note=Hypothetical protein.;Transcript_evidence=AK069119 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J023003A19;Expression=AK069119;TENOR=Os03t0782200-01;KEGG=Os03t0782200-01
Chr03	irgsp1_rep	five_prime_UTR	32423241	32423335	.	+	.	Parent=Os03t0782200-01
Chr03	irgsp1_rep	CDS	32423336	32424046	.	+	0	Parent=Os03t0782200-01
Chr03	irgsp1_rep	three_prime_UTR	32424047	32424487	.	+	.	Parent=Os03t0782200-01
Chr03	irgsp1_rep	mRNA	32425650	32426795	.	+	.	ID=Os03t0782300-01;Name=Os03t0782300-01;Locus_id=Os03g0782300;Note=Conserved hypothetical protein.;Transcript_evidence=AK070713 (DDBJ%2C Best hit);ORF_evidence=B9F3B9 (UniProt);NIAS_FLcDNA=J023063G16;TENOR=Os03t0782300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	32425650	32426599	.	+	.	Parent=Os03t0782300-01
Chr03	irgsp1_rep	CDS	32426600	32426776	.	+	0	Parent=Os03t0782300-01
Chr03	irgsp1_rep	three_prime_UTR	32426777	32426795	.	+	.	Parent=Os03t0782300-01
Chr03	irgsp1_rep	mRNA	32425658	32426559	.	-	.	ID=Os03t0782350-00;Name=Os03t0782350-00;Locus_id=Os03g0782350;Note=Hypothetical gene.;Transcript_evidence=CT832459 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os03t0782350-00;KEGG=Os03t0782350-00
Chr03	irgsp1_rep	five_prime_UTR	32426014	32426559	.	-	.	Parent=Os03t0782350-00
Chr03	irgsp1_rep	CDS	32425696	32426013	.	-	0	Parent=Os03t0782350-00
Chr03	irgsp1_rep	three_prime_UTR	32425658	32425695	.	-	.	Parent=Os03t0782350-00
Chr03	irgsp1_rep	mRNA	32428081	32428566	.	+	.	ID=Os03t0782400-00;Name=Os03t0782400-00;Locus_id=Os03g0782400;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10CH8 (UniProt);TENOR=Os03t0782400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	32428081	32428566	.	+	0	Parent=Os03t0782400-00
Chr03	irgsp1_rep	mRNA	32432551	32435839	.	+	.	ID=Os03t0782500-01;Name=Os03t0782500-01;Locus_id=Os03g0782500;RAP-DB Gene Symbol Synonym(s)=PIL13%2C OsPIL1%2C OsPIL13%2C OsbHLH152;RAP-DB Gene Name Synonym(s)=phytoChrome-interacting factor-like protein 1%2C PIF-like gene 1%2C PHYTOCHROME INTERACTING FACTOR-LIKE 13%2C basic helix-loop-helix protein 152;CGSNL Gene Symbol=PIL13;Oryzabase Gene Symbol Synonym(s)=OsPIL1%2C OsPIL13%2C OsbHLH152%2C bHLH152%2C PIF7%2C OsPIF7%2C OsPIF4%2C PIF4;Oryzabase Gene Name Synonym(s)=phytoChrome-interacting factor-like protein 1%2C PIF-like gene 1%2C PHYTOCHROME INTERACTING FACTOR-LIKE 13%2C basic helix-loop-helix protein 152%2C PhytoChrome-interacting factor 7;Note=PhytoChrome-interacting factor-like bHLH protein%2C Stress-responsive transcription factor%2C Regulator of reduced internode elongation under drought conditions;Transcript_evidence=AK105637;ORF_evidence=Q10CH5;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);NIAS_FLcDNA=001-200-E02;Manual Curation=January 18%2C 2017;Literature_PMID=22984180,17485859;Oryzabase=11594;Expression=AK105637;TENOR=Os03t0782500-01;KEGG=Os03t0782500-01
Chr03	irgsp1_rep	five_prime_UTR	32432551	32432880	.	+	.	Parent=Os03t0782500-01
Chr03	irgsp1_rep	five_prime_UTR	32433115	32433289	.	+	.	Parent=Os03t0782500-01
Chr03	irgsp1_rep	CDS	32433290	32433877	.	+	0	Parent=Os03t0782500-01
Chr03	irgsp1_rep	CDS	32433963	32434064	.	+	0	Parent=Os03t0782500-01
Chr03	irgsp1_rep	CDS	32434142	32434207	.	+	0	Parent=Os03t0782500-01
Chr03	irgsp1_rep	CDS	32434389	32434454	.	+	0	Parent=Os03t0782500-01
Chr03	irgsp1_rep	CDS	32434547	32434834	.	+	0	Parent=Os03t0782500-01
Chr03	irgsp1_rep	CDS	32434915	32435037	.	+	0	Parent=Os03t0782500-01
Chr03	irgsp1_rep	three_prime_UTR	32435038	32435052	.	+	.	Parent=Os03t0782500-01
Chr03	irgsp1_rep	three_prime_UTR	32435590	32435839	.	+	.	Parent=Os03t0782500-01
Chr03	irgsp1_rep	mRNA	32440885	32442986	.	-	.	ID=Os03t0782900-01;Name=Os03t0782900-01;Locus_id=Os03g0782900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK108367 (DDBJ%2C Best hit);ORF_evidence=Q9AY61 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-142-D04;Expression=AK108367;TENOR=Os03t0782900-01;KEGG=Os03t0782900-01
Chr03	irgsp1_rep	CDS	32442440	32442986	.	-	0	Parent=Os03t0782900-01
Chr03	irgsp1_rep	CDS	32442054	32442361	.	-	2	Parent=Os03t0782900-01
Chr03	irgsp1_rep	three_prime_UTR	32441729	32442053	.	-	.	Parent=Os03t0782900-01
Chr03	irgsp1_rep	three_prime_UTR	32440885	32441538	.	-	.	Parent=Os03t0782900-01
Chr03	irgsp1_rep	mRNA	32441133	32443718	.	+	.	ID=Os03t0782950-00;Name=Os03t0782950-00;Locus_id=Os03g0782950;Note=Hypothetical protein.;Transcript_evidence=tplb0031e02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0782950-00
Chr03	irgsp1_rep	five_prime_UTR	32441133	32441623	.	+	.	Parent=Os03t0782950-00
Chr03	irgsp1_rep	five_prime_UTR	32441918	32442177	.	+	.	Parent=Os03t0782950-00
Chr03	irgsp1_rep	CDS	32442178	32442356	.	+	0	Parent=Os03t0782950-00
Chr03	irgsp1_rep	CDS	32442435	32442684	.	+	1	Parent=Os03t0782950-00
Chr03	irgsp1_rep	three_prime_UTR	32442685	32443718	.	+	.	Parent=Os03t0782950-00
Chr03	irgsp1_rep	mRNA	32444133	32449496	.	+	.	ID=Os03t0783000-01;Name=Os03t0783000-01;Locus_id=Os03g0783000;Note=Similar to Actin-related protein 7.;Transcript_evidence=AK069426 (DDBJ%2C Best hit);ORF_evidence=A3ANB5 (UniProt);InterPro=Actin-like (IPR004000);NIAS_FLcDNA=J023020D04;TENOR=Os03t0783000-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	32444133	32444364	.	+	.	Parent=Os03t0783000-01
Chr03	irgsp1_rep	CDS	32444365	32444442	.	+	0	Parent=Os03t0783000-01
Chr03	irgsp1_rep	CDS	32444542	32444754	.	+	0	Parent=Os03t0783000-01
Chr03	irgsp1_rep	CDS	32445696	32445837	.	+	0	Parent=Os03t0783000-01
Chr03	irgsp1_rep	CDS	32447205	32447449	.	+	2	Parent=Os03t0783000-01
Chr03	irgsp1_rep	CDS	32447671	32447854	.	+	0	Parent=Os03t0783000-01
Chr03	irgsp1_rep	CDS	32448603	32448670	.	+	2	Parent=Os03t0783000-01
Chr03	irgsp1_rep	CDS	32448754	32448906	.	+	0	Parent=Os03t0783000-01
Chr03	irgsp1_rep	three_prime_UTR	32448907	32448944	.	+	.	Parent=Os03t0783000-01
Chr03	irgsp1_rep	three_prime_UTR	32449053	32449496	.	+	.	Parent=Os03t0783000-01
Chr03	irgsp1_rep	mRNA	32454422	32455766	.	+	.	ID=Os03t0783051-00;Name=Os03t0783051-00;Locus_id=Os03g0783051;Note=Conserved hypothetical protein.;Transcript_evidence=FP098389 (DDBJ);ORF_evidence=A3ANB6 (UniProt);TENOR=Os03t0783051-00
Chr03	irgsp1_rep	five_prime_UTR	32454422	32454636	.	+	.	Parent=Os03t0783051-00
Chr03	irgsp1_rep	five_prime_UTR	32454689	32454892	.	+	.	Parent=Os03t0783051-00
Chr03	irgsp1_rep	CDS	32454893	32455024	.	+	0	Parent=Os03t0783051-00
Chr03	irgsp1_rep	three_prime_UTR	32455025	32455766	.	+	.	Parent=Os03t0783051-00
Chr03	irgsp1_rep	mRNA	32456138	32457740	.	+	.	ID=Os03t0783100-01;Name=Os03t0783100-01;Locus_id=Os03g0783100;Note=Conserved hypothetical protein.;Transcript_evidence=AK111430 (DDBJ%2C Best hit);ORF_evidence=Q10CH4 (UniProt);NIAS_FLcDNA=002-182-H07;Expression=AK111430;TENOR=Os03t0783100-01;KEGG=Os03t0783100-01
Chr03	irgsp1_rep	five_prime_UTR	32456138	32456976	.	+	.	Parent=Os03t0783100-01
Chr03	irgsp1_rep	CDS	32456977	32457684	.	+	0	Parent=Os03t0783100-01
Chr03	irgsp1_rep	three_prime_UTR	32457685	32457740	.	+	.	Parent=Os03t0783100-01
Chr03	irgsp1_rep	mRNA	32513510	32515995	.	-	.	ID=Os03t0783700-00;Name=Os03t0783700-00;Locus_id=Os03g0783700;Note=Similar to AP-1 complex subunit sigma-2.;Transcript_evidence=CT841986 (DDBJ%2C Best hit);ORF_evidence=NP_001148359.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: intracellular protein transport (GO:0006886),Biological Process: protein transport (GO:0015031),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: membrane coat (GO:0030117),Molecular Function: protein transporter activity (GO:0008565);InterPro=Clathrin adaptor complex%2C small chain (IPR000804),Longin-like (IPR011012),Adaptor protein complex%2C sigma subunit (IPR016635),AP complex%2C mu/sigma subunit (IPR022775);TENOR=Os03t0783700-00;KEGG=Os03t0783700-00
Chr03	irgsp1_rep	five_prime_UTR	32515699	32515995	.	-	.	Parent=Os03t0783700-00
Chr03	irgsp1_rep	CDS	32515696	32515698	.	-	0	Parent=Os03t0783700-00
Chr03	irgsp1_rep	CDS	32515440	32515526	.	-	0	Parent=Os03t0783700-00
Chr03	irgsp1_rep	CDS	32514819	32514910	.	-	0	Parent=Os03t0783700-00
Chr03	irgsp1_rep	CDS	32514598	32514706	.	-	1	Parent=Os03t0783700-00
Chr03	irgsp1_rep	CDS	32514474	32514509	.	-	0	Parent=Os03t0783700-00
Chr03	irgsp1_rep	CDS	32514254	32514340	.	-	0	Parent=Os03t0783700-00
Chr03	irgsp1_rep	CDS	32513823	32513894	.	-	0	Parent=Os03t0783700-00
Chr03	irgsp1_rep	three_prime_UTR	32513510	32513822	.	-	.	Parent=Os03t0783700-00
Chr03	irgsp1_rep	mRNA	32515404	32515721	.	+	.	ID=Os03t0783725-00;Name=Os03t0783725-00;Locus_id=Os03g0783725;Note=Hypothetical conserved gene.;Transcript_evidence=EU948333 (DDBJ);ORF_evidence=NP_001170033.1 (RefSeq);TENOR=Os03t0783725-00;KEGG=Os03t0783725-00
Chr03	irgsp1_rep	CDS	32515404	32515586	.	+	0	Parent=Os03t0783725-00
Chr03	irgsp1_rep	three_prime_UTR	32515587	32515721	.	+	.	Parent=Os03t0783725-00
Chr03	irgsp1_rep	mRNA	32523609	32524843	.	+	.	ID=Os03t0783800-00;Name=Os03t0783800-00;Locus_id=Os03g0783800;Note=Protein of unknown function DUF295 family protein.;Transcript_evidence=FP094378 (DDBJ);ORF_evidence=NP_001173661.1 (RefSeq);InterPro=Protein of unknown function DUF295 (IPR005174);TENOR=Os03t0783800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	32523609	32523682	.	+	.	Parent=Os03t0783800-00
Chr03	irgsp1_rep	CDS	32523683	32524843	.	+	0	Parent=Os03t0783800-00
Chr03	irgsp1_rep	mRNA	32532282	32535642	.	+	.	ID=Os03t0784000-01;Name=Os03t0784000-01;Locus_id=Os03g0784000;Note=Similar to deoxyribodipyrimidine photolyase.;Transcript_evidence=AK073469 (DDBJ%2C Best hit);ORF_evidence=NP_001149840.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FAD dependent oxidoreductase (IPR006076);NIAS_FLcDNA=J033044F22;Expression=AK073469;TENOR=Os03t0784000-01;KEGG=Os03t0784000-01
Chr03	irgsp1_rep	five_prime_UTR	32532282	32532338	.	+	.	Parent=Os03t0784000-01
Chr03	irgsp1_rep	CDS	32532339	32532402	.	+	0	Parent=Os03t0784000-01
Chr03	irgsp1_rep	CDS	32532514	32532662	.	+	2	Parent=Os03t0784000-01
Chr03	irgsp1_rep	three_prime_UTR	32532663	32532893	.	+	.	Parent=Os03t0784000-01
Chr03	irgsp1_rep	three_prime_UTR	32533326	32533398	.	+	.	Parent=Os03t0784000-01
Chr03	irgsp1_rep	three_prime_UTR	32533494	32533673	.	+	.	Parent=Os03t0784000-01
Chr03	irgsp1_rep	three_prime_UTR	32534319	32534416	.	+	.	Parent=Os03t0784000-01
Chr03	irgsp1_rep	three_prime_UTR	32534844	32534941	.	+	.	Parent=Os03t0784000-01
Chr03	irgsp1_rep	three_prime_UTR	32535052	32535212	.	+	.	Parent=Os03t0784000-01
Chr03	irgsp1_rep	three_prime_UTR	32535285	32535642	.	+	.	Parent=Os03t0784000-01
Chr03	irgsp1_rep	mRNA	32532286	32539083	.	+	.	ID=Os03t0784000-02;Name=Os03t0784000-02;Locus_id=Os03g0784000;Note=Similar to deoxyribodipyrimidine photolyase.;Transcript_evidence=AK067337 (DDBJ%2C Best hit);ORF_evidence=NP_001149840.1 (RefSeq);NIAS_FLcDNA=J013102O14;Expression=AK067337;TENOR=Os03t0784000-02;KEGG=Os03t0784000-02
Chr03	irgsp1_rep	five_prime_UTR	32532286	32532338	.	+	.	Parent=Os03t0784000-02
Chr03	irgsp1_rep	CDS	32532339	32532402	.	+	0	Parent=Os03t0784000-02
Chr03	irgsp1_rep	CDS	32532514	32532540	.	+	2	Parent=Os03t0784000-02
Chr03	irgsp1_rep	CDS	32532556	32532613	.	+	2	Parent=Os03t0784000-02
Chr03	irgsp1_rep	CDS	32532713	32532893	.	+	1	Parent=Os03t0784000-02
Chr03	irgsp1_rep	CDS	32533326	32533398	.	+	0	Parent=Os03t0784000-02
Chr03	irgsp1_rep	CDS	32533494	32533673	.	+	2	Parent=Os03t0784000-02
Chr03	irgsp1_rep	CDS	32534319	32534416	.	+	2	Parent=Os03t0784000-02
Chr03	irgsp1_rep	CDS	32534844	32534941	.	+	0	Parent=Os03t0784000-02
Chr03	irgsp1_rep	CDS	32535026	32535199	.	+	1	Parent=Os03t0784000-02
Chr03	irgsp1_rep	CDS	32535285	32535465	.	+	1	Parent=Os03t0784000-02
Chr03	irgsp1_rep	three_prime_UTR	32535466	32536887	.	+	.	Parent=Os03t0784000-02
Chr03	irgsp1_rep	three_prime_UTR	32537501	32537705	.	+	.	Parent=Os03t0784000-02
Chr03	irgsp1_rep	three_prime_UTR	32538678	32539083	.	+	.	Parent=Os03t0784000-02
Chr03	irgsp1_rep	mRNA	32532286	32539857	.	+	.	ID=Os03t0784000-03;Name=Os03t0784000-03;Locus_id=Os03g0784000;Note=FAD dependent oxidoreductase family protein.;Transcript_evidence=AK100003 (DDBJ%2C Best hit);ORF_evidence=NP_001149840.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FAD dependent oxidoreductase (IPR006076);NIAS_FLcDNA=J013135F18;Expression=AK100003;TENOR=Os03t0784000-03;KEGG=Os03t0784000-03
Chr03	irgsp1_rep	five_prime_UTR	32532286	32532338	.	+	.	Parent=Os03t0784000-03
Chr03	irgsp1_rep	CDS	32532339	32532402	.	+	0	Parent=Os03t0784000-03
Chr03	irgsp1_rep	CDS	32532514	32532613	.	+	2	Parent=Os03t0784000-03
Chr03	irgsp1_rep	CDS	32532713	32532893	.	+	1	Parent=Os03t0784000-03
Chr03	irgsp1_rep	CDS	32533326	32533398	.	+	0	Parent=Os03t0784000-03
Chr03	irgsp1_rep	CDS	32533494	32533673	.	+	2	Parent=Os03t0784000-03
Chr03	irgsp1_rep	CDS	32534319	32534416	.	+	2	Parent=Os03t0784000-03
Chr03	irgsp1_rep	CDS	32534844	32534941	.	+	0	Parent=Os03t0784000-03
Chr03	irgsp1_rep	CDS	32535026	32535199	.	+	1	Parent=Os03t0784000-03
Chr03	irgsp1_rep	CDS	32535285	32535465	.	+	1	Parent=Os03t0784000-03
Chr03	irgsp1_rep	three_prime_UTR	32535466	32535468	.	+	.	Parent=Os03t0784000-03
Chr03	irgsp1_rep	three_prime_UTR	32535542	32536887	.	+	.	Parent=Os03t0784000-03
Chr03	irgsp1_rep	three_prime_UTR	32537557	32537705	.	+	.	Parent=Os03t0784000-03
Chr03	irgsp1_rep	three_prime_UTR	32539455	32539857	.	+	.	Parent=Os03t0784000-03
Chr03	irgsp1_rep	mRNA	32532707	32533580	.	-	.	ID=Os03t0784050-00;Name=Os03t0784050-00;Locus_id=Os03g0784050;Note=Hypothetical gene.;Transcript_evidence=BT086977 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0784050-00
Chr03	irgsp1_rep	five_prime_UTR	32533522	32533580	.	-	.	Parent=Os03t0784050-00
Chr03	irgsp1_rep	CDS	32533493	32533521	.	-	0	Parent=Os03t0784050-00
Chr03	irgsp1_rep	CDS	32533334	32533397	.	-	1	Parent=Os03t0784050-00
Chr03	irgsp1_rep	CDS	32532707	32532901	.	-	0	Parent=Os03t0784050-00
Chr03	irgsp1_rep	mRNA	32540962	32542574	.	-	.	ID=Os03t0784100-00;Name=Os03t0784100-00;Locus_id=Os03g0784100;Oryzabase Gene Symbol Synonym(s)=OspPLAIIIgamma%2C pPLAIIIgamma;Oryzabase Gene Name Synonym(s)=Patatin-related phospholipase A III gamma;Note=Similar to Patatin-like phospholipase family protein%2C expressed.;Transcript_evidence=EU966970 (DDBJ);ORF_evidence=Q2QMB1 (UniProt);GO=Biological Process: metabolic process (GO:0008152);InterPro=Acyl transferase/acyl hydrolase/lysophospholipase (IPR016035);Oryzabase=19874;TENOR=Os03t0784100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	32541582	32542574	.	-	0	Parent=Os03t0784100-00
Chr03	irgsp1_rep	CDS	32541417	32541479	.	-	0	Parent=Os03t0784100-00
Chr03	irgsp1_rep	CDS	32540962	32541318	.	-	0	Parent=Os03t0784100-00
Chr03	irgsp1_rep	mRNA	32550906	32554338	.	-	.	ID=Os03t0784300-01;Name=Os03t0784300-01;Locus_id=Os03g0784300;Note=Similar to predicted protein.;Transcript_evidence=AK288769 (DDBJ%2C Best hit);ORF_evidence=B8AKW8 (UniProt);InterPro=Arv1 protein (IPR007290);NIAS_FLcDNA=J090067N16;TENOR=Os03t0784300-01;KEGG=Os03t0784300-01
Chr03	irgsp1_rep	five_prime_UTR	32554175	32554338	.	-	.	Parent=Os03t0784300-01
Chr03	irgsp1_rep	five_prime_UTR	32553963	32554043	.	-	.	Parent=Os03t0784300-01
Chr03	irgsp1_rep	CDS	32553849	32553962	.	-	0	Parent=Os03t0784300-01
Chr03	irgsp1_rep	CDS	32553704	32553751	.	-	0	Parent=Os03t0784300-01
Chr03	irgsp1_rep	CDS	32553473	32553562	.	-	0	Parent=Os03t0784300-01
Chr03	irgsp1_rep	CDS	32552941	32552986	.	-	0	Parent=Os03t0784300-01
Chr03	irgsp1_rep	CDS	32552772	32552854	.	-	2	Parent=Os03t0784300-01
Chr03	irgsp1_rep	CDS	32552592	32552686	.	-	0	Parent=Os03t0784300-01
Chr03	irgsp1_rep	CDS	32552316	32552382	.	-	1	Parent=Os03t0784300-01
Chr03	irgsp1_rep	CDS	32552156	32552231	.	-	0	Parent=Os03t0784300-01
Chr03	irgsp1_rep	CDS	32551339	32551436	.	-	2	Parent=Os03t0784300-01
Chr03	irgsp1_rep	three_prime_UTR	32550906	32551338	.	-	.	Parent=Os03t0784300-01
Chr03	irgsp1_rep	mRNA	32554569	32560144	.	+	.	ID=Os03t0784400-01;Name=Os03t0784400-01;Locus_id=Os03g0784400;Note=Protein of unknown function DUF1692 domain containing protein.;Transcript_evidence=AK103474 (DDBJ%2C Best hit);ORF_evidence=Q94GH5 (UniProt);InterPro=Domain of unknown function DUF1692 (IPR012936);NIAS_FLcDNA=J033130D12;Expression=AK103474;TENOR=Os03t0784400-01;KEGG=Os03t0784400-01
Chr03	irgsp1_rep	five_prime_UTR	32554569	32554705	.	+	.	Parent=Os03t0784400-01
Chr03	irgsp1_rep	five_prime_UTR	32555160	32555166	.	+	.	Parent=Os03t0784400-01
Chr03	irgsp1_rep	CDS	32555167	32555254	.	+	0	Parent=Os03t0784400-01
Chr03	irgsp1_rep	CDS	32555354	32555436	.	+	2	Parent=Os03t0784400-01
Chr03	irgsp1_rep	CDS	32556101	32556176	.	+	0	Parent=Os03t0784400-01
Chr03	irgsp1_rep	CDS	32556287	32556354	.	+	2	Parent=Os03t0784400-01
Chr03	irgsp1_rep	CDS	32556719	32556803	.	+	0	Parent=Os03t0784400-01
Chr03	irgsp1_rep	CDS	32557681	32557796	.	+	2	Parent=Os03t0784400-01
Chr03	irgsp1_rep	CDS	32557908	32557991	.	+	0	Parent=Os03t0784400-01
Chr03	irgsp1_rep	CDS	32558805	32558951	.	+	0	Parent=Os03t0784400-01
Chr03	irgsp1_rep	CDS	32559256	32559367	.	+	0	Parent=Os03t0784400-01
Chr03	irgsp1_rep	CDS	32559438	32559557	.	+	2	Parent=Os03t0784400-01
Chr03	irgsp1_rep	CDS	32559749	32559822	.	+	2	Parent=Os03t0784400-01
Chr03	irgsp1_rep	three_prime_UTR	32559823	32560144	.	+	.	Parent=Os03t0784400-01
Chr03	irgsp1_rep	mRNA	32559254	32560055	.	+	.	ID=Os03t0784400-02;Name=Os03t0784400-02;Locus_id=Os03g0784400;Note=Similar to predicted protein.;Transcript_evidence=AK062053 (DDBJ%2C Best hit);ORF_evidence=Q94GH5 (UniProt);InterPro=Domain of unknown function DUF1692 (IPR012936);NIAS_FLcDNA=001-044-B12;Expression=AK062053;TENOR=Os03t0784400-02;KEGG=Os03t0784400-02
Chr03	irgsp1_rep	five_prime_UTR	32559254	32559255	.	+	.	Parent=Os03t0784400-02
Chr03	irgsp1_rep	CDS	32559256	32559367	.	+	0	Parent=Os03t0784400-02
Chr03	irgsp1_rep	CDS	32559438	32559557	.	+	2	Parent=Os03t0784400-02
Chr03	irgsp1_rep	CDS	32559749	32559822	.	+	2	Parent=Os03t0784400-02
Chr03	irgsp1_rep	three_prime_UTR	32559823	32560055	.	+	.	Parent=Os03t0784400-02
Chr03	irgsp1_rep	mRNA	32560362	32562816	.	-	.	ID=Os03t0784500-01;Name=Os03t0784500-01;Locus_id=Os03g0784500;Note=Conserved hypothetical protein.;Transcript_evidence=AK108472 (DDBJ%2C Best hit);ORF_evidence=B9F6C0 (UniProt);NIAS_FLcDNA=002-143-E07;Expression=AK108472;TENOR=Os03t0784500-01;KEGG=Os03t0784500-01
Chr03	irgsp1_rep	five_prime_UTR	32562816	32562816	.	-	.	Parent=Os03t0784500-01
Chr03	irgsp1_rep	CDS	32562304	32562815	.	-	0	Parent=Os03t0784500-01
Chr03	irgsp1_rep	CDS	32561884	32562010	.	-	1	Parent=Os03t0784500-01
Chr03	irgsp1_rep	CDS	32561370	32561471	.	-	0	Parent=Os03t0784500-01
Chr03	irgsp1_rep	CDS	32561132	32561212	.	-	0	Parent=Os03t0784500-01
Chr03	irgsp1_rep	three_prime_UTR	32561119	32561131	.	-	.	Parent=Os03t0784500-01
Chr03	irgsp1_rep	three_prime_UTR	32560362	32560880	.	-	.	Parent=Os03t0784500-01
Chr03	irgsp1_rep	mRNA	32562874	32565104	.	-	.	ID=Os03t0784600-01;Name=Os03t0784600-01;Locus_id=Os03g0784600;Note=Conserved hypothetical protein.;Transcript_evidence=AK109744 (DDBJ%2C Best hit);ORF_evidence=Q94GH4 (UniProt);NIAS_FLcDNA=002-146-E08;TENOR=Os03t0784600-01
Chr03	irgsp1_rep	five_prime_UTR	32564779	32565104	.	-	.	Parent=Os03t0784600-01
Chr03	irgsp1_rep	CDS	32564758	32564778	.	-	0	Parent=Os03t0784600-01
Chr03	irgsp1_rep	CDS	32562874	32564246	.	-	0	Parent=Os03t0784600-01
Chr03	irgsp1_rep	mRNA	32566499	32569324	.	-	.	ID=Os03t0784700-01;Name=Os03t0784700-01;Locus_id=Os03g0784700;Oryzabase Gene Symbol Synonym(s)=FNR%2C PetH%2C OsFNR;Oryzabase Gene Name Synonym(s)=Ferredoxin-NADP+ reductase;Note=Ferredoxin--NADP reductase%2C root isozyme%2C chloroplast precursor (EC 1.18.1.2) (FNR).;Transcript_evidence=AK070598 (DDBJ%2C Best hit);ORF_evidence=C5WY84 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: thylakoid membrane (GO:0042651),Molecular Function: ferredoxin-NADP+ reductase activity (GO:0004324),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=Oxidoreductase FAD/NAD(P)-binding (IPR001433),Flavoprotein pyridine nucleotide cytoChrome reductase (IPR001709),Oxidoreductase%2C FAD-binding domain (IPR008333),Ferredoxin--NADP reductase (IPR012146),Ferredoxin Reductase (IPR015701),Ferredoxin reductase-type FAD-binding domain (IPR017927),Riboflavin synthase-like beta-barrel (IPR017938);NIAS_FLcDNA=J023055E03;Oryzabase=12447;Expression=AK070598;TENOR=Os03t0784700-01;KEGG=Os03t0784700-01 (EC:1.18.1.2)
Chr03	irgsp1_rep	five_prime_UTR	32569222	32569324	.	-	.	Parent=Os03t0784700-01
Chr03	irgsp1_rep	CDS	32569198	32569221	.	-	0	Parent=Os03t0784700-01
Chr03	irgsp1_rep	CDS	32569043	32569099	.	-	0	Parent=Os03t0784700-01
Chr03	irgsp1_rep	CDS	32568392	32568727	.	-	0	Parent=Os03t0784700-01
Chr03	irgsp1_rep	CDS	32567819	32568038	.	-	0	Parent=Os03t0784700-01
Chr03	irgsp1_rep	CDS	32567195	32567435	.	-	2	Parent=Os03t0784700-01
Chr03	irgsp1_rep	CDS	32566719	32566977	.	-	1	Parent=Os03t0784700-01
Chr03	irgsp1_rep	three_prime_UTR	32566499	32566718	.	-	.	Parent=Os03t0784700-01
Chr03	irgsp1_rep	mRNA	32566527	32569279	.	-	.	ID=Os03t0784700-02;Name=Os03t0784700-02;Locus_id=Os03g0784700;Oryzabase Gene Symbol Synonym(s)=FNR%2C PetH%2C OsFNR;Oryzabase Gene Name Synonym(s)=Ferredoxin-NADP+ reductase;Note=Ferredoxin--NADP reductase%2C root isozyme%2C chloroplast precursor (EC 1.18.1.2) (FNR).;Transcript_evidence=AK103965 (DDBJ%2C Best hit);ORF_evidence=C5WY84 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: thylakoid membrane (GO:0042651),Molecular Function: ferredoxin-NADP+ reductase activity (GO:0004324),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=Oxidoreductase FAD/NAD(P)-binding (IPR001433),Flavoprotein pyridine nucleotide cytoChrome reductase (IPR001709),Oxidoreductase%2C FAD-binding domain (IPR008333),Ferredoxin--NADP reductase (IPR012146),Ferredoxin Reductase (IPR015701),Ferredoxin reductase-type FAD-binding domain (IPR017927),Riboflavin synthase-like beta-barrel (IPR017938);NIAS_FLcDNA=001-015-G11;Oryzabase=12447;Expression=AK103965;TENOR=Os03t0784700-02;KEGG=Os03t0784700-02 (EC:1.18.1.2)
Chr03	irgsp1_rep	five_prime_UTR	32569222	32569279	.	-	.	Parent=Os03t0784700-02
Chr03	irgsp1_rep	CDS	32569198	32569221	.	-	0	Parent=Os03t0784700-02
Chr03	irgsp1_rep	CDS	32569043	32569099	.	-	0	Parent=Os03t0784700-02
Chr03	irgsp1_rep	CDS	32568392	32568727	.	-	0	Parent=Os03t0784700-02
Chr03	irgsp1_rep	CDS	32567819	32568038	.	-	0	Parent=Os03t0784700-02
Chr03	irgsp1_rep	CDS	32567195	32567435	.	-	2	Parent=Os03t0784700-02
Chr03	irgsp1_rep	CDS	32566719	32566977	.	-	1	Parent=Os03t0784700-02
Chr03	irgsp1_rep	three_prime_UTR	32566527	32566718	.	-	.	Parent=Os03t0784700-02
Chr03	irgsp1_rep	mRNA	32570073	32576114	.	-	.	ID=Os03t0784800-01;Name=Os03t0784800-01;Locus_id=Os03g0784800;Note=Homo sapiens protein involved in sexual development%2C complete cds.;Transcript_evidence=AK241140 (DDBJ%2C Best hit);ORF_evidence=Q9LT41 (UniProt);InterPro=Cell differentiation%2C Rcd1-like (IPR007216);NIAS_FLcDNA=J065099H20;TENOR=Os03t0784800-01
Chr03	irgsp1_rep	five_prime_UTR	32576019	32576114	.	-	.	Parent=Os03t0784800-01
Chr03	irgsp1_rep	CDS	32575803	32576018	.	-	0	Parent=Os03t0784800-01
Chr03	irgsp1_rep	CDS	32573436	32573507	.	-	0	Parent=Os03t0784800-01
Chr03	irgsp1_rep	CDS	32573217	32573306	.	-	0	Parent=Os03t0784800-01
Chr03	irgsp1_rep	CDS	32572881	32572923	.	-	0	Parent=Os03t0784800-01
Chr03	irgsp1_rep	CDS	32572425	32572531	.	-	2	Parent=Os03t0784800-01
Chr03	irgsp1_rep	CDS	32571422	32571517	.	-	0	Parent=Os03t0784800-01
Chr03	irgsp1_rep	CDS	32570774	32570964	.	-	0	Parent=Os03t0784800-01
Chr03	irgsp1_rep	CDS	32570598	32570667	.	-	1	Parent=Os03t0784800-01
Chr03	irgsp1_rep	CDS	32570362	32570469	.	-	0	Parent=Os03t0784800-01
Chr03	irgsp1_rep	three_prime_UTR	32570073	32570361	.	-	.	Parent=Os03t0784800-01
Chr03	irgsp1_rep	mRNA	32570073	32576064	.	-	.	ID=Os03t0784800-02;Name=Os03t0784800-02;Locus_id=Os03g0784800;Note=Homo sapiens protein involved in sexual development%2C complete cds.;Transcript_evidence=AK287904 (DDBJ%2C Best hit);ORF_evidence=Q9LT41 (UniProt);InterPro=Cell differentiation%2C Rcd1-like (IPR007216);NIAS_FLcDNA=J065211G23;TENOR=Os03t0784800-02
Chr03	irgsp1_rep	five_prime_UTR	32576019	32576064	.	-	.	Parent=Os03t0784800-02
Chr03	irgsp1_rep	CDS	32575803	32576018	.	-	0	Parent=Os03t0784800-02
Chr03	irgsp1_rep	CDS	32573436	32573507	.	-	0	Parent=Os03t0784800-02
Chr03	irgsp1_rep	CDS	32573217	32573306	.	-	0	Parent=Os03t0784800-02
Chr03	irgsp1_rep	CDS	32572881	32572923	.	-	0	Parent=Os03t0784800-02
Chr03	irgsp1_rep	CDS	32572425	32572531	.	-	2	Parent=Os03t0784800-02
Chr03	irgsp1_rep	CDS	32571422	32571517	.	-	0	Parent=Os03t0784800-02
Chr03	irgsp1_rep	CDS	32570774	32570964	.	-	0	Parent=Os03t0784800-02
Chr03	irgsp1_rep	CDS	32570598	32570667	.	-	1	Parent=Os03t0784800-02
Chr03	irgsp1_rep	CDS	32570362	32570469	.	-	0	Parent=Os03t0784800-02
Chr03	irgsp1_rep	three_prime_UTR	32570073	32570361	.	-	.	Parent=Os03t0784800-02
Chr03	irgsp1_rep	mRNA	32578826	32581477	.	+	.	ID=Os03t0784850-00;Name=Os03t0784850-00;Locus_id=Os03g0784850;Note=Similar to 40S ribosomal protein S12.;Transcript_evidence=AK250826 (DDBJ);ORF_evidence=B8B7B6 (UniProt);TENOR=Os03t0784850-00
Chr03	irgsp1_rep	five_prime_UTR	32578826	32579010	.	+	.	Parent=Os03t0784850-00
Chr03	irgsp1_rep	five_prime_UTR	32579512	32579532	.	+	.	Parent=Os03t0784850-00
Chr03	irgsp1_rep	CDS	32579533	32579564	.	+	0	Parent=Os03t0784850-00
Chr03	irgsp1_rep	CDS	32580819	32580866	.	+	1	Parent=Os03t0784850-00
Chr03	irgsp1_rep	CDS	32581072	32581096	.	+	1	Parent=Os03t0784850-00
Chr03	irgsp1_rep	three_prime_UTR	32581097	32581136	.	+	.	Parent=Os03t0784850-00
Chr03	irgsp1_rep	three_prime_UTR	32581226	32581477	.	+	.	Parent=Os03t0784850-00
Chr03	irgsp1_rep	mRNA	32582011	32584584	.	-	.	ID=Os03t0784900-01;Name=Os03t0784900-01;Locus_id=Os03g0784900;Note=Glycolipid transfer protein%2C GLTP domain containing protein.;Transcript_evidence=AK060949 (DDBJ%2C Best hit);ORF_evidence=E4MYF2 (UniProt);GO=Biological Process: glycolipid transport (GO:0046836),Cellular Component: cytoplasm (GO:0005737),Molecular Function: glycolipid transporter activity (GO:0017089),Molecular Function: glycolipid binding (GO:0051861);InterPro=Glycolipid transfer protein domain (IPR014830);NIAS_FLcDNA=006-201-F05;Expression=AK060949;TENOR=Os03t0784900-01;KEGG=Os03t0784900-01
Chr03	irgsp1_rep	five_prime_UTR	32584429	32584584	.	-	.	Parent=Os03t0784900-01
Chr03	irgsp1_rep	CDS	32584230	32584428	.	-	0	Parent=Os03t0784900-01
Chr03	irgsp1_rep	CDS	32582975	32583146	.	-	2	Parent=Os03t0784900-01
Chr03	irgsp1_rep	CDS	32582712	32582857	.	-	1	Parent=Os03t0784900-01
Chr03	irgsp1_rep	CDS	32582259	32582365	.	-	2	Parent=Os03t0784900-01
Chr03	irgsp1_rep	three_prime_UTR	32582011	32582258	.	-	.	Parent=Os03t0784900-01
Chr03	irgsp1_rep	mRNA	32582083	32584511	.	-	.	ID=Os03t0784900-02;Name=Os03t0784900-02;Locus_id=Os03g0784900;Note=Glycolipid transfer protein%2C GLTP domain containing protein.;Transcript_evidence=AK099097 (DDBJ%2C Best hit);ORF_evidence=E4MYF2 (UniProt);GO=Biological Process: glycolipid transport (GO:0046836),Cellular Component: cytoplasm (GO:0005737),Molecular Function: glycolipid transporter activity (GO:0017089),Molecular Function: glycolipid binding (GO:0051861);InterPro=Glycolipid transfer protein domain (IPR014830);NIAS_FLcDNA=J023019M19;Expression=AK099097;TENOR=Os03t0784900-02;KEGG=Os03t0784900-02
Chr03	irgsp1_rep	five_prime_UTR	32584429	32584511	.	-	.	Parent=Os03t0784900-02
Chr03	irgsp1_rep	CDS	32584230	32584428	.	-	0	Parent=Os03t0784900-02
Chr03	irgsp1_rep	CDS	32582975	32583146	.	-	2	Parent=Os03t0784900-02
Chr03	irgsp1_rep	CDS	32582712	32582857	.	-	1	Parent=Os03t0784900-02
Chr03	irgsp1_rep	CDS	32582259	32582365	.	-	2	Parent=Os03t0784900-02
Chr03	irgsp1_rep	three_prime_UTR	32582083	32582258	.	-	.	Parent=Os03t0784900-02
Chr03	irgsp1_rep	mRNA	32582209	32583048	.	+	.	ID=Os03t0785001-00;Name=Os03t0785001-00;Locus_id=Os03g0785001;Note=Non-protein coding transcript.;Transcript_evidence=BT019282 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0785001-00
Chr03	irgsp1_rep	exon	32582209	32582357	.	+	.	Parent=Os03t0785001-00
Chr03	irgsp1_rep	exon	32582704	32582866	.	+	.	Parent=Os03t0785001-00
Chr03	irgsp1_rep	exon	32582986	32583048	.	+	.	Parent=Os03t0785001-00
Chr03	irgsp1_rep	mRNA	32587390	32588169	.	+	.	ID=Os03t0785100-01;Name=Os03t0785100-01;Locus_id=Os03g0785100;Note=Conserved hypothetical protein.;Transcript_evidence=AK063237 (DDBJ%2C Best hit);ORF_evidence=NP_001174057.1 (RefSeq);NIAS_FLcDNA=001-112-F12;TENOR=Os03t0785100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	32587390	32587462	.	+	.	Parent=Os03t0785100-01
Chr03	irgsp1_rep	CDS	32587463	32587768	.	+	0	Parent=Os03t0785100-01
Chr03	irgsp1_rep	three_prime_UTR	32587769	32588169	.	+	.	Parent=Os03t0785100-01
Chr03	irgsp1_rep	mRNA	32590198	32591451	.	-	.	ID=Os03t0785200-01;Name=Os03t0785200-01;Locus_id=Os03g0785200;Note=Mitochodrial transcription termination factor-related family protein.;Transcript_evidence=AK240643 (DDBJ%2C Best hit),AK242138 (DDBJ%2C Best hit);ORF_evidence=Q2L8W8 (UniProt);InterPro=Mitochodrial transcription termination factor-related (IPR003690);NIAS_FLcDNA=J023002I24,J075150G04;TENOR=Os03t0785200-01;KEGG=Os03t0785200-01
Chr03	irgsp1_rep	five_prime_UTR	32591391	32591451	.	-	.	Parent=Os03t0785200-01
Chr03	irgsp1_rep	CDS	32590458	32591390	.	-	0	Parent=Os03t0785200-01
Chr03	irgsp1_rep	three_prime_UTR	32590198	32590457	.	-	.	Parent=Os03t0785200-01
Chr03	irgsp1_rep	mRNA	32591747	32599028	.	-	.	ID=Os03t0785300-01;Name=Os03t0785300-01;Locus_id=Os03g0785300;Note=Zinc finger%2C C3HC-like domain containing protein.;Transcript_evidence=AK102218 (DDBJ%2C Best hit);ORF_evidence=Q10CF1 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C3HC-like (IPR012935),Nuclear-interacting partner of ALK/Rsm1-like (IPR013909);NIAS_FLcDNA=J033087L08;Expression=AK102218;TENOR=Os03t0785300-01;KEGG=Os03t0785300-01
Chr03	irgsp1_rep	five_prime_UTR	32598948	32599028	.	-	.	Parent=Os03t0785300-01
Chr03	irgsp1_rep	CDS	32598883	32598947	.	-	0	Parent=Os03t0785300-01
Chr03	irgsp1_rep	CDS	32597897	32598143	.	-	1	Parent=Os03t0785300-01
Chr03	irgsp1_rep	CDS	32597166	32597289	.	-	0	Parent=Os03t0785300-01
Chr03	irgsp1_rep	CDS	32595044	32595384	.	-	2	Parent=Os03t0785300-01
Chr03	irgsp1_rep	CDS	32593191	32594922	.	-	0	Parent=Os03t0785300-01
Chr03	irgsp1_rep	CDS	32592422	32592672	.	-	2	Parent=Os03t0785300-01
Chr03	irgsp1_rep	CDS	32592158	32592229	.	-	0	Parent=Os03t0785300-01
Chr03	irgsp1_rep	three_prime_UTR	32591747	32592157	.	-	.	Parent=Os03t0785300-01
Chr03	irgsp1_rep	mRNA	32592070	32593356	.	-	.	ID=Os03t0785300-02;Name=Os03t0785300-02;Locus_id=Os03g0785300;Note=Nuclear-interacting partner of ALK/Rsm1-like domain containing protein.;Transcript_evidence=AK063754 (DDBJ%2C Best hit);ORF_evidence=Q10CF1 (UniProt);InterPro=Nuclear-interacting partner of ALK/Rsm1-like (IPR013909);NIAS_FLcDNA=001-121-A04;TENOR=Os03t0785300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	32593191	32593356	.	-	0	Parent=Os03t0785300-02
Chr03	irgsp1_rep	CDS	32592422	32592672	.	-	2	Parent=Os03t0785300-02
Chr03	irgsp1_rep	CDS	32592158	32592229	.	-	0	Parent=Os03t0785300-02
Chr03	irgsp1_rep	three_prime_UTR	32592070	32592157	.	-	.	Parent=Os03t0785300-02
Chr03	irgsp1_rep	mRNA	32593490	32598146	.	+	.	ID=Os03t0785401-00;Name=Os03t0785401-00;Locus_id=Os03g0785401;Note=Hypothetical gene.;Transcript_evidence=BT085109 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0785401-00;KEGG=Os03t0785401-00
Chr03	irgsp1_rep	five_prime_UTR	32593490	32594917	.	+	.	Parent=Os03t0785401-00
Chr03	irgsp1_rep	five_prime_UTR	32595039	32595179	.	+	.	Parent=Os03t0785401-00
Chr03	irgsp1_rep	CDS	32595180	32595380	.	+	0	Parent=Os03t0785401-00
Chr03	irgsp1_rep	CDS	32597162	32597300	.	+	0	Parent=Os03t0785401-00
Chr03	irgsp1_rep	CDS	32597911	32598020	.	+	2	Parent=Os03t0785401-00
Chr03	irgsp1_rep	three_prime_UTR	32598021	32598146	.	+	.	Parent=Os03t0785401-00
Chr03	irgsp1_rep	mRNA	32599261	32601926	.	+	.	ID=Os03t0785500-01;Name=Os03t0785500-01;Locus_id=Os03g0785500;Note=Protein of unknown function DUF284%2C transmembrane eukaryotic family protein.;Transcript_evidence=AK067718 (DDBJ%2C Best hit);ORF_evidence=NP_851139.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Protein of unknown function DUF284%2C transmembrane eukaryotic (IPR005045);NIAS_FLcDNA=J013119K21;Expression=AK067718;TENOR=Os03t0785500-01;KEGG=Os03t0785500-01
Chr03	irgsp1_rep	five_prime_UTR	32599261	32599329	.	+	.	Parent=Os03t0785500-01
Chr03	irgsp1_rep	CDS	32599330	32599420	.	+	0	Parent=Os03t0785500-01
Chr03	irgsp1_rep	CDS	32599804	32599865	.	+	2	Parent=Os03t0785500-01
Chr03	irgsp1_rep	CDS	32599956	32600030	.	+	0	Parent=Os03t0785500-01
Chr03	irgsp1_rep	CDS	32600129	32600245	.	+	0	Parent=Os03t0785500-01
Chr03	irgsp1_rep	CDS	32600419	32600489	.	+	0	Parent=Os03t0785500-01
Chr03	irgsp1_rep	CDS	32600615	32600909	.	+	1	Parent=Os03t0785500-01
Chr03	irgsp1_rep	CDS	32601007	32601296	.	+	0	Parent=Os03t0785500-01
Chr03	irgsp1_rep	CDS	32601582	32601636	.	+	1	Parent=Os03t0785500-01
Chr03	irgsp1_rep	three_prime_UTR	32601637	32601926	.	+	.	Parent=Os03t0785500-01
Chr03	irgsp1_rep	mRNA	32614060	32618299	.	+	.	ID=Os03t0785800-01;Name=Os03t0785800-01;Locus_id=Os03g0785800;RAP-DB Gene Symbol Synonym(s)=OsPCF6%2C PCF6;RAP-DB Gene Name Synonym(s)=PROLIFERATING CELL FACTOR 6;CGSNL Gene Symbol=PCF6;CGSNL Gene Name=PROLIFERATING CELL FACTOR 6;Oryzabase Gene Symbol Synonym(s)=OsPCF6;Note=Transcription factor %2C Cold tolerance;Transcript_evidence=AK242788;ORF_evidence=Q10CE8;InterPro=Transcription factor%2C TCP (IPR005333),Transcription factor TCP subgroup (IPR017887);NIAS_FLcDNA=J090057A17;Manual Curation=November 26%2C 2015;Literature_PMID=24667308,12000681;Oryzabase=11693;TENOR=Os03t0785800-01;KEGG=Os03t0785800-01
Chr03	irgsp1_rep	five_prime_UTR	32614060	32614394	.	+	.	Parent=Os03t0785800-01
Chr03	irgsp1_rep	CDS	32614395	32615468	.	+	0	Parent=Os03t0785800-01
Chr03	irgsp1_rep	three_prime_UTR	32615469	32615495	.	+	.	Parent=Os03t0785800-01
Chr03	irgsp1_rep	three_prime_UTR	32617879	32618299	.	+	.	Parent=Os03t0785800-01
Chr03	irgsp1_rep	mRNA	32619263	32620205	.	-	.	ID=Os03t0785900-01;Name=Os03t0785900-01;Locus_id=Os03g0785900;CGSNL Gene Symbol=GSTU1;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=OsGSTU1;Oryzabase Gene Name Synonym(s)=glutathione transferase U1;Note=Similar to Glutathione-S-transferase.;Transcript_evidence=AK103358 (DDBJ%2C Best hit);ORF_evidence=Q8RW03 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=J033126L16;Oryzabase=9521;Expression=AK103358;TENOR=Os03t0785900-01;KEGG=Os03t0785900-01
Chr03	irgsp1_rep	five_prime_UTR	32620156	32620205	.	-	.	Parent=Os03t0785900-01
Chr03	irgsp1_rep	CDS	32619460	32620155	.	-	0	Parent=Os03t0785900-01
Chr03	irgsp1_rep	three_prime_UTR	32619263	32619459	.	-	.	Parent=Os03t0785900-01
Chr03	irgsp1_rep	mRNA	32624612	32627796	.	+	.	ID=Os03t0786000-01;Name=Os03t0786000-01;Locus_id=Os03g0786000;Note=Similar to Glycine-rich protein.;Transcript_evidence=AK061286 (DDBJ%2C Best hit),AK073187 (DDBJ%2C Best hit);ORF_evidence=B6TGJ0 (UniProt);NIAS_FLcDNA=006-212-H02,J033010B08;TENOR=Os03t0786000-01
Chr03	irgsp1_rep	five_prime_UTR	32624612	32624753	.	+	.	Parent=Os03t0786000-01
Chr03	irgsp1_rep	CDS	32624754	32624760	.	+	0	Parent=Os03t0786000-01
Chr03	irgsp1_rep	CDS	32626055	32626291	.	+	2	Parent=Os03t0786000-01
Chr03	irgsp1_rep	CDS	32626368	32626639	.	+	2	Parent=Os03t0786000-01
Chr03	irgsp1_rep	CDS	32627170	32627262	.	+	0	Parent=Os03t0786000-01
Chr03	irgsp1_rep	CDS	32627341	32627544	.	+	0	Parent=Os03t0786000-01
Chr03	irgsp1_rep	three_prime_UTR	32627545	32627796	.	+	.	Parent=Os03t0786000-01
Chr03	irgsp1_rep	mRNA	32628790	32632431	.	+	.	ID=Os03t0786100-01;Name=Os03t0786100-01;Locus_id=Os03g0786100;RAP-DB Gene Symbol Synonym(s)=OsGLO1;RAP-DB Gene Name Synonym(s)=Glycolate oxidase 1;CGSNL Gene Symbol=GLO1;CGSNL Gene Name=GLYCOLATE OXIDASE 1;Oryzabase Gene Symbol Synonym(s)=GLO1%2C OsGLO1;Oryzabase Gene Name Synonym(s)=Glycolate oxidase 1;Note=Glycolate oxidase%2C Photorespiratory enzyme%2C Strong regulation over photosynthesis%2C Feed-back inhibition on Rubisco activase;Transcript_evidence=AK061719;ORF_evidence=Q10CE4;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alpha-hydroxy acid dehydrogenase%2C FMN-dependent (IPR012133),Aldolase-type TIM barrel (IPR013785),FMN-dependent dehydrogenase (IPR000262),FMN-dependent alpha-hydroxy acid dehydrogenase%2C active site (IPR008259);NIAS_FLcDNA=001-037-H12;Manual Curation=August 23%2C 2017;Literature_PMID=28789632,19264754;Oryzabase=12472;Expression=AK061719;TENOR=Os03t0786100-01;KEGG=Os03t0786100-01 (EC:1.1.3.15)
Chr03	irgsp1_rep	five_prime_UTR	32628790	32628894	.	+	.	Parent=Os03t0786100-01
Chr03	irgsp1_rep	five_prime_UTR	32629480	32629509	.	+	.	Parent=Os03t0786100-01
Chr03	irgsp1_rep	CDS	32629510	32629649	.	+	0	Parent=Os03t0786100-01
Chr03	irgsp1_rep	CDS	32630140	32630264	.	+	1	Parent=Os03t0786100-01
Chr03	irgsp1_rep	CDS	32630505	32630551	.	+	2	Parent=Os03t0786100-01
Chr03	irgsp1_rep	CDS	32630684	32630761	.	+	0	Parent=Os03t0786100-01
Chr03	irgsp1_rep	CDS	32630858	32630982	.	+	0	Parent=Os03t0786100-01
Chr03	irgsp1_rep	CDS	32631086	32631152	.	+	1	Parent=Os03t0786100-01
Chr03	irgsp1_rep	CDS	32631251	32631313	.	+	0	Parent=Os03t0786100-01
Chr03	irgsp1_rep	CDS	32631437	32631506	.	+	0	Parent=Os03t0786100-01
Chr03	irgsp1_rep	CDS	32631606	32631811	.	+	2	Parent=Os03t0786100-01
Chr03	irgsp1_rep	CDS	32631902	32632090	.	+	0	Parent=Os03t0786100-01
Chr03	irgsp1_rep	three_prime_UTR	32632091	32632431	.	+	.	Parent=Os03t0786100-01
Chr03	irgsp1_rep	mRNA	32628852	32632431	.	+	.	ID=Os03t0786100-02;Name=Os03t0786100-02;Locus_id=Os03g0786100;CGSNL Gene Symbol=GLO1;CGSNL Gene Name=GLYCOLATE OXIDASE 1;Oryzabase Gene Symbol Synonym(s)=GLO1%2C OsGLO1;Oryzabase Gene Name Synonym(s)=Glycolate oxidase 1;Note=Similar to Glycolate oxidase (EC 1.1.3.15) (Fragment).;Transcript_evidence=AK120304 (DDBJ%2C Best hit),AK098878 (DDBJ%2C Best hit);ORF_evidence=Q10CE4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FMN-dependent dehydrogenase (IPR000262),FMN-dependent alpha-hydroxy acid dehydrogenase%2C active site (IPR008259),Alpha-hydroxy acid dehydrogenase%2C FMN-dependent (IPR012133),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J013052N09,J013001E15;Oryzabase=12472;TENOR=Os03t0786100-02
Chr03	irgsp1_rep	five_prime_UTR	32628852	32628894	.	+	.	Parent=Os03t0786100-02
Chr03	irgsp1_rep	five_prime_UTR	32629480	32629509	.	+	.	Parent=Os03t0786100-02
Chr03	irgsp1_rep	CDS	32629510	32629649	.	+	0	Parent=Os03t0786100-02
Chr03	irgsp1_rep	CDS	32630140	32630264	.	+	1	Parent=Os03t0786100-02
Chr03	irgsp1_rep	CDS	32630505	32630551	.	+	2	Parent=Os03t0786100-02
Chr03	irgsp1_rep	CDS	32630684	32630761	.	+	0	Parent=Os03t0786100-02
Chr03	irgsp1_rep	CDS	32630858	32630982	.	+	0	Parent=Os03t0786100-02
Chr03	irgsp1_rep	CDS	32631086	32631152	.	+	1	Parent=Os03t0786100-02
Chr03	irgsp1_rep	CDS	32631251	32631313	.	+	0	Parent=Os03t0786100-02
Chr03	irgsp1_rep	CDS	32631437	32631506	.	+	0	Parent=Os03t0786100-02
Chr03	irgsp1_rep	CDS	32631606	32631811	.	+	2	Parent=Os03t0786100-02
Chr03	irgsp1_rep	CDS	32631902	32632090	.	+	0	Parent=Os03t0786100-02
Chr03	irgsp1_rep	three_prime_UTR	32632091	32632431	.	+	.	Parent=Os03t0786100-02
Chr03	irgsp1_rep	mRNA	32630138	32632072	.	-	.	ID=Os03t0786250-00;Name=Os03t0786250-00;Locus_id=Os03g0786250;Note=Hypothetical gene.;Transcript_evidence=BT066752 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0786250-00;KEGG=Os03t0786250-00
Chr03	irgsp1_rep	five_prime_UTR	32632045	32632072	.	-	.	Parent=Os03t0786250-00
Chr03	irgsp1_rep	CDS	32631673	32632044	.	-	0	Parent=Os03t0786250-00
Chr03	irgsp1_rep	three_prime_UTR	32630611	32631672	.	-	.	Parent=Os03t0786250-00
Chr03	irgsp1_rep	three_prime_UTR	32630447	32630556	.	-	.	Parent=Os03t0786250-00
Chr03	irgsp1_rep	three_prime_UTR	32630138	32630290	.	-	.	Parent=Os03t0786250-00
Chr03	irgsp1_rep	mRNA	32645695	32646908	.	-	.	ID=Os03t0786400-01;Name=Os03t0786400-01;Locus_id=Os03g0786400;RAP-DB Gene Symbol Synonym(s)=DST%2C OsDST;RAP-DB Gene Name Synonym(s)=DROUGHT AND SALT TOLERANCE%2C zinc finger transcription factor DST;CGSNL Gene Symbol=DST;CGSNL Gene Name=DROUGHT AND SALT TOLERANCE;Oryzabase Gene Symbol Synonym(s)=OsDST%2C DLN102%2C OsDLN102;Oryzabase Gene Name Synonym(s)=zinc finger transcription factor DST%2C Drought and Salt Tolerance gene%2C DLN repressor 102%2C DLN motif protein 102;Note=C2H2 zinc finger transcription factor%2C Drought and salt tolerance%2C Stomatal aperture control;Transcript_evidence=GQ178286;ORF_evidence=Q10CE2;GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C C2H2 (IPR007087);Manual Curation=November 17%2C 2015;Literature_PMID=26496194,19651988;Oryzabase=11731;TENOR=Os03t0786400-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	32646003	32646908	.	-	0	Parent=Os03t0786400-01
Chr03	irgsp1_rep	three_prime_UTR	32645695	32646002	.	-	.	Parent=Os03t0786400-01
Chr03	irgsp1_rep	mRNA	32656085	32660637	.	-	.	ID=Os03t0786500-01;Name=Os03t0786500-01;Locus_id=Os03g0786500;Note=Similar to Glycine-rich protein 2.;Transcript_evidence=AK106487 (DDBJ%2C Best hit);ORF_evidence=Q10CE1 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Zinc finger%2C GRF-type (IPR010666),Zinc finger%2C CCHC retroviral-type (IPR013084);NIAS_FLcDNA=002-104-H09;Expression=AK106487;TENOR=Os03t0786500-01;KEGG=Os03t0786500-01
Chr03	irgsp1_rep	five_prime_UTR	32660570	32660637	.	-	.	Parent=Os03t0786500-01
Chr03	irgsp1_rep	CDS	32659997	32660569	.	-	0	Parent=Os03t0786500-01
Chr03	irgsp1_rep	CDS	32657839	32658039	.	-	0	Parent=Os03t0786500-01
Chr03	irgsp1_rep	CDS	32656333	32656713	.	-	0	Parent=Os03t0786500-01
Chr03	irgsp1_rep	three_prime_UTR	32656085	32656332	.	-	.	Parent=Os03t0786500-01
Chr03	irgsp1_rep	mRNA	32662262	32663811	.	-	.	ID=Os03t0786600-01;Name=Os03t0786600-01;Locus_id=Os03g0786600;Note=Peptidase C12%2C ubiquitin carboxyl-terminal hydrolase 1 domain containing protein.;Transcript_evidence=AK109838 (DDBJ%2C Best hit);ORF_evidence=A2XMN7 (UniProt);InterPro=Plant organelle RNA recognition domain (IPR021099);NIAS_FLcDNA=002-148-D10;Expression=AK109838;TENOR=Os03t0786600-01;KEGG=Os03t0786600-01
Chr03	irgsp1_rep	five_prime_UTR	32663661	32663811	.	-	.	Parent=Os03t0786600-01
Chr03	irgsp1_rep	CDS	32662443	32663660	.	-	0	Parent=Os03t0786600-01
Chr03	irgsp1_rep	three_prime_UTR	32662262	32662442	.	-	.	Parent=Os03t0786600-01
Chr03	irgsp1_rep	mRNA	32665994	32671079	.	+	.	ID=Os03t0786700-01;Name=Os03t0786700-01;Locus_id=Os03g0786700;Note=N2%2CN2-dimethylguanosine tRNA methyltransferase family protein.;Transcript_evidence=AK067936 (DDBJ%2C Best hit);ORF_evidence=NP_197085.2 (RefSeq);GO=Biological Process: tRNA processing (GO:0008033),Molecular Function: RNA binding (GO:0003723),Molecular Function: tRNA (guanine-N2-)-methyltransferase activity (GO:0004809);InterPro=N2%2CN2-dimethylguanosine tRNA methyltransferase (IPR002905);NIAS_FLcDNA=J013128E07;Expression=AK067936;TENOR=Os03t0786700-01;KEGG=Os03t0786700-01 (EC:2.1.1.32)
Chr03	irgsp1_rep	five_prime_UTR	32665994	32666114	.	+	.	Parent=Os03t0786700-01
Chr03	irgsp1_rep	five_prime_UTR	32666196	32666243	.	+	.	Parent=Os03t0786700-01
Chr03	irgsp1_rep	CDS	32666244	32666357	.	+	0	Parent=Os03t0786700-01
Chr03	irgsp1_rep	CDS	32667031	32667324	.	+	0	Parent=Os03t0786700-01
Chr03	irgsp1_rep	CDS	32667829	32667916	.	+	0	Parent=Os03t0786700-01
Chr03	irgsp1_rep	CDS	32668009	32668130	.	+	2	Parent=Os03t0786700-01
Chr03	irgsp1_rep	CDS	32668398	32668537	.	+	0	Parent=Os03t0786700-01
Chr03	irgsp1_rep	CDS	32668614	32668686	.	+	1	Parent=Os03t0786700-01
Chr03	irgsp1_rep	CDS	32668965	32669053	.	+	0	Parent=Os03t0786700-01
Chr03	irgsp1_rep	CDS	32669166	32669271	.	+	1	Parent=Os03t0786700-01
Chr03	irgsp1_rep	CDS	32669380	32669592	.	+	0	Parent=Os03t0786700-01
Chr03	irgsp1_rep	CDS	32670139	32670333	.	+	0	Parent=Os03t0786700-01
Chr03	irgsp1_rep	CDS	32670464	32670541	.	+	0	Parent=Os03t0786700-01
Chr03	irgsp1_rep	CDS	32670622	32670936	.	+	0	Parent=Os03t0786700-01
Chr03	irgsp1_rep	three_prime_UTR	32670937	32671079	.	+	.	Parent=Os03t0786700-01
Chr03	irgsp1_rep	mRNA	32666221	32670202	.	-	.	ID=Os03t0786751-00;Name=Os03t0786751-00;Locus_id=Os03g0786751;Note=Non-protein coding transcript.;Transcript_evidence=AK365842 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0786751-00
Chr03	irgsp1_rep	exon	32670146	32670202	.	-	.	Parent=Os03t0786751-00
Chr03	irgsp1_rep	exon	32669375	32669598	.	-	.	Parent=Os03t0786751-00
Chr03	irgsp1_rep	exon	32669176	32669266	.	-	.	Parent=Os03t0786751-00
Chr03	irgsp1_rep	exon	32668987	32669061	.	-	.	Parent=Os03t0786751-00
Chr03	irgsp1_rep	exon	32668632	32668707	.	-	.	Parent=Os03t0786751-00
Chr03	irgsp1_rep	exon	32668410	32668552	.	-	.	Parent=Os03t0786751-00
Chr03	irgsp1_rep	exon	32668007	32668140	.	-	.	Parent=Os03t0786751-00
Chr03	irgsp1_rep	exon	32667820	32667914	.	-	.	Parent=Os03t0786751-00
Chr03	irgsp1_rep	exon	32667029	32667318	.	-	.	Parent=Os03t0786751-00
Chr03	irgsp1_rep	exon	32666221	32666355	.	-	.	Parent=Os03t0786751-00
Chr03	irgsp1_rep	mRNA	32677683	32678967	.	+	.	ID=Os03t0786800-01;Name=Os03t0786800-01;Locus_id=Os03g0786800;Note=Similar to Cullin-4A (CUL-4A).;Transcript_evidence=AK059186 (DDBJ%2C Best hit);ORF_evidence=Q1W691 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Cellular Component: cullin-RING ubiquitin ligase complex (GO:0031461),Molecular Function: ubiquitin protein ligase binding (GO:0031625);InterPro=Cullin%2C N-terminal (IPR001373),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Cullin%2C conserved site (IPR016157),Cullin homology (IPR016158),Cullin protein%2C neddylation domain (IPR019559);NIAS_FLcDNA=001-023-G09;Expression=AK059186;TENOR=Os03t0786800-01;KEGG=Os03t0786800-01
Chr03	irgsp1_rep	five_prime_UTR	32677683	32677684	.	+	.	Parent=Os03t0786800-01
Chr03	irgsp1_rep	CDS	32677685	32677795	.	+	0	Parent=Os03t0786800-01
Chr03	irgsp1_rep	CDS	32677872	32677952	.	+	0	Parent=Os03t0786800-01
Chr03	irgsp1_rep	CDS	32678048	32678128	.	+	0	Parent=Os03t0786800-01
Chr03	irgsp1_rep	CDS	32678546	32678626	.	+	0	Parent=Os03t0786800-01
Chr03	irgsp1_rep	CDS	32678713	32678826	.	+	0	Parent=Os03t0786800-01
Chr03	irgsp1_rep	three_prime_UTR	32678827	32678967	.	+	.	Parent=Os03t0786800-01
Chr03	irgsp1_rep	mRNA	32679834	32691068	.	+	.	ID=Os03t0786900-01;Name=Os03t0786900-01;Locus_id=Os03g0786900;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK121531 (DDBJ%2C Best hit);ORF_evidence=B9F6D0 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Tetratricopeptide-like helical (IPR011990),TRAPP III complex%2C Trs85 (IPR024420);NIAS_FLcDNA=J033030O16;TENOR=Os03t0786900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	32679834	32679951	.	+	0	Parent=Os03t0786900-01
Chr03	irgsp1_rep	CDS	32680060	32680154	.	+	2	Parent=Os03t0786900-01
Chr03	irgsp1_rep	CDS	32680262	32680361	.	+	0	Parent=Os03t0786900-01
Chr03	irgsp1_rep	CDS	32680856	32680960	.	+	2	Parent=Os03t0786900-01
Chr03	irgsp1_rep	CDS	32681040	32681202	.	+	2	Parent=Os03t0786900-01
Chr03	irgsp1_rep	CDS	32681408	32681528	.	+	1	Parent=Os03t0786900-01
Chr03	irgsp1_rep	CDS	32681627	32681689	.	+	0	Parent=Os03t0786900-01
Chr03	irgsp1_rep	CDS	32682038	32682118	.	+	0	Parent=Os03t0786900-01
Chr03	irgsp1_rep	CDS	32682226	32682317	.	+	0	Parent=Os03t0786900-01
Chr03	irgsp1_rep	CDS	32682400	32682550	.	+	1	Parent=Os03t0786900-01
Chr03	irgsp1_rep	CDS	32682890	32682976	.	+	0	Parent=Os03t0786900-01
Chr03	irgsp1_rep	CDS	32683703	32683822	.	+	0	Parent=Os03t0786900-01
Chr03	irgsp1_rep	CDS	32683927	32684058	.	+	0	Parent=Os03t0786900-01
Chr03	irgsp1_rep	CDS	32684156	32684253	.	+	0	Parent=Os03t0786900-01
Chr03	irgsp1_rep	CDS	32684332	32684455	.	+	1	Parent=Os03t0786900-01
Chr03	irgsp1_rep	CDS	32684539	32684646	.	+	0	Parent=Os03t0786900-01
Chr03	irgsp1_rep	CDS	32685235	32685370	.	+	0	Parent=Os03t0786900-01
Chr03	irgsp1_rep	CDS	32686164	32686274	.	+	2	Parent=Os03t0786900-01
Chr03	irgsp1_rep	CDS	32686376	32686439	.	+	2	Parent=Os03t0786900-01
Chr03	irgsp1_rep	CDS	32686546	32686618	.	+	1	Parent=Os03t0786900-01
Chr03	irgsp1_rep	CDS	32687175	32687351	.	+	0	Parent=Os03t0786900-01
Chr03	irgsp1_rep	CDS	32687425	32687535	.	+	0	Parent=Os03t0786900-01
Chr03	irgsp1_rep	CDS	32688224	32688394	.	+	0	Parent=Os03t0786900-01
Chr03	irgsp1_rep	CDS	32688486	32688641	.	+	0	Parent=Os03t0786900-01
Chr03	irgsp1_rep	CDS	32689003	32689236	.	+	0	Parent=Os03t0786900-01
Chr03	irgsp1_rep	CDS	32689349	32689516	.	+	0	Parent=Os03t0786900-01
Chr03	irgsp1_rep	CDS	32689729	32689838	.	+	0	Parent=Os03t0786900-01
Chr03	irgsp1_rep	CDS	32689926	32690454	.	+	1	Parent=Os03t0786900-01
Chr03	irgsp1_rep	three_prime_UTR	32690455	32691068	.	+	.	Parent=Os03t0786900-01
Chr03	irgsp1_rep	mRNA	32694811	32696014	.	+	.	ID=Os03t0787000-01;Name=Os03t0787000-01;Locus_id=Os03g0787000;RAP-DB Gene Symbol Synonym(s)=OsSYP121;RAP-DB Gene Name Synonym(s)=Syntaxin of Plants 121;CGSNL Gene Symbol=SYP121;CGSNL Gene Name=SYNTAXIN OF PLANTS 121;Oryzabase Gene Symbol Synonym(s)=OsSYP121;Oryzabase Gene Name Synonym(s)=PSY1 homolog%2C syntaxin%2C Syntaxin of Plants121;Note=Syntaxin%2C Rice blast resistance;Transcript_evidence=AK065950;ORF_evidence=Q6F3B4;GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Molecular Function: SNAP receptor activity (GO:0005484),Cellular Component: membrane (GO:0016020);InterPro=SNARE (IPR010989),Syntaxin%2C N-terminal domain (IPR006011),Target SNARE coiled-coil homology domain (IPR000727),Syntaxin/epimorphin%2C conserved site (IPR006012);NIAS_FLcDNA=J013049M07;Manual Curation=January 31%2C 2019;Literature_PMID=30617050;Oryzabase=20424;Expression=AK065950;TENOR=Os03t0787000-01;KEGG=Os03t0787000-01;Subcellular location=plasma membrane (GO:0005886)
Chr03	irgsp1_rep	five_prime_UTR	32694811	32694856	.	+	.	Parent=Os03t0787000-01
Chr03	irgsp1_rep	CDS	32694857	32695849	.	+	0	Parent=Os03t0787000-01
Chr03	irgsp1_rep	three_prime_UTR	32695850	32696014	.	+	.	Parent=Os03t0787000-01
Chr03	irgsp1_rep	mRNA	32697861	32698801	.	-	.	ID=Os03t0787100-01;Name=Os03t0787100-01;Locus_id=Os03g0787100;Note=Similar to expp1 protein.;Transcript_evidence=AK110858 (DDBJ%2C Best hit);ORF_evidence=NP_001148709.1 (RefSeq);NIAS_FLcDNA=002-172-D03;Expression=AK110858;TENOR=Os03t0787100-01;KEGG=Os03t0787100-01
Chr03	irgsp1_rep	five_prime_UTR	32698715	32698801	.	-	.	Parent=Os03t0787100-01
Chr03	irgsp1_rep	CDS	32698370	32698714	.	-	0	Parent=Os03t0787100-01
Chr03	irgsp1_rep	CDS	32698268	32698294	.	-	0	Parent=Os03t0787100-01
Chr03	irgsp1_rep	three_prime_UTR	32697861	32698267	.	-	.	Parent=Os03t0787100-01
Chr03	irgsp1_rep	mRNA	32698388	32698865	.	+	.	ID=Os03t0787150-00;Name=Os03t0787150-00;Locus_id=Os03g0787150;Note=Hypothetical gene.;Transcript_evidence=EU948379 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0787150-00;KEGG=Os03t0787150-00
Chr03	irgsp1_rep	CDS	32698388	32698840	.	+	0	Parent=Os03t0787150-00
Chr03	irgsp1_rep	three_prime_UTR	32698841	32698865	.	+	.	Parent=Os03t0787150-00
Chr03	irgsp1_rep	mRNA	32700648	32704373	.	-	.	ID=Os03t0787200-01;Name=Os03t0787200-01;Locus_id=Os03g0787200;Note=IQ calmodulin-binding region domain containing protein.;Transcript_evidence=AK103438 (DDBJ%2C Best hit);ORF_evidence=Q10CD0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);NIAS_FLcDNA=J033129C07;Expression=AK103438;TENOR=Os03t0787200-01;KEGG=Os03t0787200-01
Chr03	irgsp1_rep	five_prime_UTR	32704137	32704373	.	-	.	Parent=Os03t0787200-01
Chr03	irgsp1_rep	five_prime_UTR	32704008	32704037	.	-	.	Parent=Os03t0787200-01
Chr03	irgsp1_rep	CDS	32703903	32704007	.	-	0	Parent=Os03t0787200-01
Chr03	irgsp1_rep	CDS	32703186	32703422	.	-	0	Parent=Os03t0787200-01
Chr03	irgsp1_rep	CDS	32702788	32703015	.	-	0	Parent=Os03t0787200-01
Chr03	irgsp1_rep	CDS	32702537	32702650	.	-	0	Parent=Os03t0787200-01
Chr03	irgsp1_rep	CDS	32701273	32701738	.	-	0	Parent=Os03t0787200-01
Chr03	irgsp1_rep	CDS	32701005	32701123	.	-	2	Parent=Os03t0787200-01
Chr03	irgsp1_rep	three_prime_UTR	32700648	32701004	.	-	.	Parent=Os03t0787200-01
Chr03	irgsp1_rep	mRNA	32708413	32711325	.	+	.	ID=Os03t0787300-01;Name=Os03t0787300-01;Locus_id=Os03g0787300;Oryzabase Gene Symbol Synonym(s)=OsDjA5;Oryzabase Gene Name Synonym(s)=DnaJ domain protein A5;Note=Similar to DnaJ homolog.;Transcript_evidence=AK061049 (DDBJ%2C Best hit),AK104315 (DDBJ%2C Best hit);ORF_evidence=Q0PMD7 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C cysteine-rich domain (IPR001305),Heat shock protein DnaJ%2C N-terminal (IPR001623),Chaperone DnaJ%2C C-terminal (IPR002939),Heat shock protein DnaJ (IPR003095),HSP40/DnaJ peptide-binding (IPR008971),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=006-205-G01,001-023-E04;Oryzabase=12142;TENOR=Os03t0787300-01
Chr03	irgsp1_rep	five_prime_UTR	32708413	32708500	.	+	.	Parent=Os03t0787300-01
Chr03	irgsp1_rep	CDS	32708501	32708650	.	+	0	Parent=Os03t0787300-01
Chr03	irgsp1_rep	CDS	32709602	32709764	.	+	0	Parent=Os03t0787300-01
Chr03	irgsp1_rep	CDS	32709851	32709989	.	+	2	Parent=Os03t0787300-01
Chr03	irgsp1_rep	CDS	32710082	32710358	.	+	1	Parent=Os03t0787300-01
Chr03	irgsp1_rep	CDS	32710464	32710662	.	+	0	Parent=Os03t0787300-01
Chr03	irgsp1_rep	CDS	32710792	32711117	.	+	2	Parent=Os03t0787300-01
Chr03	irgsp1_rep	three_prime_UTR	32711118	32711325	.	+	.	Parent=Os03t0787300-01
Chr03	irgsp1_rep	mRNA	32710290	32711121	.	-	.	ID=Os03t0787350-00;Name=Os03t0787350-00;Locus_id=Os03g0787350;Note=Hypothetical protein.;Transcript_evidence=BT016912 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0787350-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	32711121	32711121	.	-	.	Parent=Os03t0787350-00
Chr03	irgsp1_rep	CDS	32710794	32711120	.	-	0	Parent=Os03t0787350-00
Chr03	irgsp1_rep	three_prime_UTR	32710791	32710793	.	-	.	Parent=Os03t0787350-00
Chr03	irgsp1_rep	three_prime_UTR	32710472	32710661	.	-	.	Parent=Os03t0787350-00
Chr03	irgsp1_rep	three_prime_UTR	32710290	32710364	.	-	.	Parent=Os03t0787350-00
Chr03	irgsp1_rep	mRNA	32711829	32712223	.	-	.	ID=Os03t0787400-01;Name=Os03t0787400-01;Locus_id=Os03g0787400;Note=Non-protein coding transcript.;Transcript_evidence=AK120413 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013092D06;TENOR=Os03t0787400-01
Chr03	irgsp1_rep	exon	32711829	32712223	.	-	.	Parent=Os03t0787400-01
Chr03	irgsp1_rep	mRNA	32715699	32716283	.	+	.	ID=Os03t0787500-00;Name=Os03t0787500-00;Locus_id=Os03g0787500;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6F3A9 (UniProt);TENOR=Os03t0787500-00;KEGG=Os03t0787500-00
Chr03	irgsp1_rep	CDS	32715699	32716283	.	+	0	Parent=Os03t0787500-00
Chr03	irgsp1_rep	mRNA	32715378	32716307	.	-	.	ID=Os03t0787600-01;Name=Os03t0787600-01;Locus_id=Os03g0787600;Note=Conserved hypothetical protein.;Transcript_evidence=AK059899 (DDBJ%2C Best hit);ORF_evidence=B8AKY3 (UniProt);NIAS_FLcDNA=006-208-F10;Expression=AK059899;TENOR=Os03t0787600-01;KEGG=Os03t0787600-01
Chr03	irgsp1_rep	five_prime_UTR	32716016	32716307	.	-	.	Parent=Os03t0787600-01
Chr03	irgsp1_rep	CDS	32715653	32716015	.	-	0	Parent=Os03t0787600-01
Chr03	irgsp1_rep	three_prime_UTR	32715378	32715652	.	-	.	Parent=Os03t0787600-01
Chr03	irgsp1_rep	mRNA	32715361	32716250	.	-	.	ID=Os03t0787600-02;Name=Os03t0787600-02;Locus_id=Os03g0787600;Note=Conserved hypothetical protein.;Transcript_evidence=AK070802 (DDBJ%2C Best hit);ORF_evidence=B8AKY3 (UniProt);NIAS_FLcDNA=J023073H09;Expression=AK070802;TENOR=Os03t0787600-02;KEGG=Os03t0787600-02
Chr03	irgsp1_rep	five_prime_UTR	32716016	32716250	.	-	.	Parent=Os03t0787600-02
Chr03	irgsp1_rep	CDS	32715653	32716015	.	-	0	Parent=Os03t0787600-02
Chr03	irgsp1_rep	three_prime_UTR	32715361	32715652	.	-	.	Parent=Os03t0787600-02
Chr03	irgsp1_rep	mRNA	32732162	32733002	.	-	.	ID=Os03t0788000-00;Name=Os03t0788000-00;Locus_id=Os03g0788000;Note=Similar to OSIGBa0116M22.8 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01JZ1 (UniProt);GO=Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase C1A%2C papain (IPR013128),Proteinase inhibitor I29%2C cathepsin propeptide (IPR013201);TENOR=Os03t0788000-00
Chr03	irgsp1_rep	CDS	32732714	32733002	.	-	0	Parent=Os03t0788000-00
Chr03	irgsp1_rep	CDS	32732162	32732556	.	-	2	Parent=Os03t0788000-00
Chr03	irgsp1_rep	mRNA	32736206	32737397	.	+	.	ID=Os03t0788100-01;Name=Os03t0788100-01;Locus_id=Os03g0788100;Note=Similar to RING-H2 finger protein ATL1P (RING-H2 finger protein ATL3).;Transcript_evidence=AK109154 (DDBJ%2C Best hit);ORF_evidence=NP_001151304.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=002-155-G01;Expression=AK109154;TENOR=Os03t0788100-01;KEGG=Os03t0788100-01
Chr03	irgsp1_rep	five_prime_UTR	32736206	32736310	.	+	.	Parent=Os03t0788100-01
Chr03	irgsp1_rep	CDS	32736311	32736937	.	+	0	Parent=Os03t0788100-01
Chr03	irgsp1_rep	three_prime_UTR	32736938	32737397	.	+	.	Parent=Os03t0788100-01
Chr03	irgsp1_rep	mRNA	32739765	32742267	.	+	.	ID=Os03t0788200-01;Name=Os03t0788200-01;Locus_id=Os03g0788200;Note=MD-2-related lipid-recognition domain containing protein.;Transcript_evidence=AK106623 (DDBJ%2C Best hit);ORF_evidence=NP_001152140.1 (RefSeq);InterPro=MD-2-related lipid-recognition (IPR003172),Immunoglobulin E-set (IPR014756);NIAS_FLcDNA=002-113-B04;Expression=AK106623;TENOR=Os03t0788200-01;KEGG=Os03t0788200-01
Chr03	irgsp1_rep	five_prime_UTR	32739765	32739823	.	+	.	Parent=Os03t0788200-01
Chr03	irgsp1_rep	CDS	32739824	32739926	.	+	0	Parent=Os03t0788200-01
Chr03	irgsp1_rep	CDS	32740028	32740129	.	+	2	Parent=Os03t0788200-01
Chr03	irgsp1_rep	CDS	32741698	32741855	.	+	2	Parent=Os03t0788200-01
Chr03	irgsp1_rep	CDS	32742012	32742119	.	+	0	Parent=Os03t0788200-01
Chr03	irgsp1_rep	three_prime_UTR	32742120	32742267	.	+	.	Parent=Os03t0788200-01
Chr03	irgsp1_rep	mRNA	32743434	32744563	.	+	.	ID=Os03t0788250-00;Name=Os03t0788250-00;Locus_id=Os03g0788250;Note=Hypothetical conserved gene.;Transcript_evidence=CT835265 (DDBJ%2C Best hit);ORF_evidence=A2XMQ3 (UniProt);TENOR=Os03t0788250-00;KEGG=Os03t0788250-00
Chr03	irgsp1_rep	five_prime_UTR	32743434	32743586	.	+	.	Parent=Os03t0788250-00
Chr03	irgsp1_rep	CDS	32743587	32743674	.	+	0	Parent=Os03t0788250-00
Chr03	irgsp1_rep	CDS	32743711	32743976	.	+	2	Parent=Os03t0788250-00
Chr03	irgsp1_rep	three_prime_UTR	32743977	32744563	.	+	.	Parent=Os03t0788250-00
Chr03	irgsp1_rep	mRNA	32744711	32751054	.	+	.	ID=Os03t0788300-01;Name=Os03t0788300-01;Locus_id=Os03g0788300;Note=Conserved hypothetical protein.;Transcript_evidence=AK069469 (DDBJ%2C Best hit);ORF_evidence=Q10CC1 (UniProt);NIAS_FLcDNA=J023022D04;Expression=AK069469;TENOR=Os03t0788300-01;KEGG=Os03t0788300-01
Chr03	irgsp1_rep	five_prime_UTR	32744711	32744773	.	+	.	Parent=Os03t0788300-01
Chr03	irgsp1_rep	CDS	32744774	32744791	.	+	0	Parent=Os03t0788300-01
Chr03	irgsp1_rep	CDS	32745084	32745254	.	+	0	Parent=Os03t0788300-01
Chr03	irgsp1_rep	CDS	32746011	32746298	.	+	0	Parent=Os03t0788300-01
Chr03	irgsp1_rep	CDS	32746434	32746520	.	+	0	Parent=Os03t0788300-01
Chr03	irgsp1_rep	CDS	32746867	32747565	.	+	0	Parent=Os03t0788300-01
Chr03	irgsp1_rep	CDS	32747657	32748144	.	+	0	Parent=Os03t0788300-01
Chr03	irgsp1_rep	CDS	32748706	32749175	.	+	1	Parent=Os03t0788300-01
Chr03	irgsp1_rep	CDS	32749272	32750605	.	+	2	Parent=Os03t0788300-01
Chr03	irgsp1_rep	three_prime_UTR	32750606	32751054	.	+	.	Parent=Os03t0788300-01
Chr03	irgsp1_rep	mRNA	32749181	32750970	.	+	.	ID=Os03t0788300-02;Name=Os03t0788300-02;Locus_id=Os03g0788300;Note=Hypothetical conserved gene.;Transcript_evidence=AK059615 (DDBJ%2C Best hit);ORF_evidence=Q10CC1 (UniProt);NIAS_FLcDNA=001-030-G04;Expression=AK059615;TENOR=Os03t0788300-02;KEGG=Os03t0788300-02
Chr03	irgsp1_rep	five_prime_UTR	32749181	32749261	.	+	.	Parent=Os03t0788300-02
Chr03	irgsp1_rep	CDS	32749262	32750605	.	+	0	Parent=Os03t0788300-02
Chr03	irgsp1_rep	three_prime_UTR	32750606	32750970	.	+	.	Parent=Os03t0788300-02
Chr03	irgsp1_rep	mRNA	32748694	32750265	.	-	.	ID=Os03t0788400-00;Name=Os03t0788400-00;Locus_id=Os03g0788400;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001051502.1 (RefSeq);TENOR=Os03t0788400-00;KEGG=Os03t0788400-00
Chr03	irgsp1_rep	CDS	32749534	32750265	.	-	0	Parent=Os03t0788400-00
Chr03	irgsp1_rep	CDS	32748694	32749332	.	-	0	Parent=Os03t0788400-00
Chr03	irgsp1_rep	mRNA	32751815	32755644	.	+	.	ID=Os03t0788500-01;Name=Os03t0788500-01;Locus_id=Os03g0788500;RAP-DB Gene Symbol Synonym(s)=CDPK10%2C OsCDPK10%2C OsCPK10;RAP-DB Gene Name Synonym(s)=CALCIUM-DEPENDENT PROTEIN KINASE 10%2C calcium-dependent protein kinase;CGSNL Gene Symbol=CDPK10;CGSNL Gene Name=CALCIUM-DEPENDENT PROTEIN KINASE 10;Oryzabase Gene Symbol Synonym(s)=OsCDPK10%2C OsCPK10%2C CPK10;Oryzabase Gene Name Synonym(s)=calcium-dependent protein kinase;Note=Calcium-dependent protein kinase%2C Regulaton of immune responses%2C Disease resistance;Transcript_evidence=AK072204;ORF_evidence=Q6F3A6;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),EF-hand domain pair (IPR011992),EF-hand domain (IPR002048),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271),EF-Hand 1%2C calcium-binding site (IPR018247);NIAS_FLcDNA=J013164K19;Manual Curation=December 13%2C 2016;Literature_PMID=24141028;Oryzabase=8063;Expression=AK072204;TENOR=Os03t0788500-01;KEGG=Os03t0788500-01 (EC:2.7.11.17)
Chr03	irgsp1_rep	five_prime_UTR	32751815	32752437	.	+	.	Parent=Os03t0788500-01
Chr03	irgsp1_rep	CDS	32752438	32753299	.	+	0	Parent=Os03t0788500-01
Chr03	irgsp1_rep	CDS	32753743	32753886	.	+	2	Parent=Os03t0788500-01
Chr03	irgsp1_rep	CDS	32754008	32754160	.	+	2	Parent=Os03t0788500-01
Chr03	irgsp1_rep	CDS	32754284	32754399	.	+	2	Parent=Os03t0788500-01
Chr03	irgsp1_rep	CDS	32754667	32754834	.	+	0	Parent=Os03t0788500-01
Chr03	irgsp1_rep	CDS	32754947	32755171	.	+	0	Parent=Os03t0788500-01
Chr03	irgsp1_rep	CDS	32755297	32755428	.	+	0	Parent=Os03t0788500-01
Chr03	irgsp1_rep	three_prime_UTR	32755429	32755644	.	+	.	Parent=Os03t0788500-01
Chr03	irgsp1_rep	mRNA	32752656	32755170	.	-	.	ID=Os03t0788550-00;Name=Os03t0788550-00;Locus_id=Os03g0788550;Note=Hypothetical protein.;Transcript_evidence=tplb0061j19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0788550-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	32754962	32755170	.	-	.	Parent=Os03t0788550-00
Chr03	irgsp1_rep	five_prime_UTR	32754555	32754851	.	-	.	Parent=Os03t0788550-00
Chr03	irgsp1_rep	five_prime_UTR	32754055	32754168	.	-	.	Parent=Os03t0788550-00
Chr03	irgsp1_rep	five_prime_UTR	32753725	32753930	.	-	.	Parent=Os03t0788550-00
Chr03	irgsp1_rep	CDS	32753721	32753724	.	-	0	Parent=Os03t0788550-00
Chr03	irgsp1_rep	CDS	32752656	32753279	.	-	2	Parent=Os03t0788550-00
Chr03	irgsp1_rep	mRNA	32757036	32760505	.	-	.	ID=Os03t0788600-02;Name=Os03t0788600-02;Locus_id=Os03g0788600;CGSNL Gene Symbol=FLA24;CGSNL Gene Name=FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 24;Oryzabase Gene Symbol Synonym(s)=OsFLA24;Oryzabase Gene Name Synonym(s)=fasciclin-like AGP 24%2C fasciclin-like arabinogalactan protein 24;Note=FAS1 domain domain containing protein.;Transcript_evidence=AK069046 (DDBJ%2C Best hit),AK106114 (DDBJ%2C Best hit);ORF_evidence=B6TRG3 (UniProt);NIAS_FLcDNA=J023009K09,001-207-E02;Oryzabase=11359;Expression=AK069046;TENOR=Os03t0788600-02;KEGG=Os03t0788600-02
Chr03	irgsp1_rep	five_prime_UTR	32760375	32760505	.	-	.	Parent=Os03t0788600-02
Chr03	irgsp1_rep	CDS	32759024	32760374	.	-	0	Parent=Os03t0788600-02
Chr03	irgsp1_rep	CDS	32757382	32757455	.	-	2	Parent=Os03t0788600-02
Chr03	irgsp1_rep	three_prime_UTR	32757036	32757381	.	-	.	Parent=Os03t0788600-02
Chr03	irgsp1_rep	mRNA	32757381	32760425	.	+	.	ID=Os03t0788650-00;Name=Os03t0788650-00;Locus_id=Os03g0788650;Note=Hypothetical protein.;Transcript_evidence=tplb0029f18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0788650-00
Chr03	irgsp1_rep	five_prime_UTR	32757381	32757460	.	+	.	Parent=Os03t0788650-00
Chr03	irgsp1_rep	five_prime_UTR	32759034	32759538	.	+	.	Parent=Os03t0788650-00
Chr03	irgsp1_rep	CDS	32759539	32760180	.	+	0	Parent=Os03t0788650-00
Chr03	irgsp1_rep	three_prime_UTR	32760181	32760425	.	+	.	Parent=Os03t0788650-00
Chr03	irgsp1_rep	mRNA	32780139	32782701	.	-	.	ID=Os03t0788700-01;Name=Os03t0788700-01;Locus_id=Os03g0788700;CGSNL Gene Symbol=FLA17;CGSNL Gene Name=FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 17;Oryzabase Gene Symbol Synonym(s)=OsFLA17;Oryzabase Gene Name Synonym(s)=fasciclin-like AGP 17%2C fasciclin-like arabinogalactan protein 17;Note=FAS1 domain domain containing protein.;Transcript_evidence=AK073842 (DDBJ%2C Best hit);ORF_evidence=B6TRG3 (UniProt);InterPro=FAS1 domain (IPR000782);NIAS_FLcDNA=J033067C09;Oryzabase=11352;Expression=AK073842;TENOR=Os03t0788700-01;KEGG=Os03t0788700-01
Chr03	irgsp1_rep	five_prime_UTR	32782612	32782701	.	-	.	Parent=Os03t0788700-01
Chr03	irgsp1_rep	CDS	32781246	32782611	.	-	0	Parent=Os03t0788700-01
Chr03	irgsp1_rep	CDS	32780427	32780500	.	-	2	Parent=Os03t0788700-01
Chr03	irgsp1_rep	three_prime_UTR	32780139	32780426	.	-	.	Parent=Os03t0788700-01
Chr03	irgsp1_rep	mRNA	32783503	32787320	.	-	.	ID=Os03t0788800-01;Name=Os03t0788800-01;Locus_id=Os03g0788800;Oryzabase Gene Symbol Synonym(s)=OsRFPH2-19;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPH2-19%2C RING-H2 protein 19;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK071670 (DDBJ%2C Best hit);ORF_evidence=Q2HT04 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J023106F04;Oryzabase=11780;Expression=AK071670;TENOR=Os03t0788800-01;KEGG=Os03t0788800-01
Chr03	irgsp1_rep	five_prime_UTR	32787085	32787320	.	-	.	Parent=Os03t0788800-01
Chr03	irgsp1_rep	five_prime_UTR	32786768	32786820	.	-	.	Parent=Os03t0788800-01
Chr03	irgsp1_rep	CDS	32786636	32786767	.	-	0	Parent=Os03t0788800-01
Chr03	irgsp1_rep	CDS	32786491	32786537	.	-	0	Parent=Os03t0788800-01
Chr03	irgsp1_rep	CDS	32785231	32785293	.	-	1	Parent=Os03t0788800-01
Chr03	irgsp1_rep	CDS	32785058	32785157	.	-	1	Parent=Os03t0788800-01
Chr03	irgsp1_rep	CDS	32784579	32784946	.	-	0	Parent=Os03t0788800-01
Chr03	irgsp1_rep	CDS	32784382	32784489	.	-	1	Parent=Os03t0788800-01
Chr03	irgsp1_rep	CDS	32783997	32784297	.	-	1	Parent=Os03t0788800-01
Chr03	irgsp1_rep	three_prime_UTR	32783952	32783996	.	-	.	Parent=Os03t0788800-01
Chr03	irgsp1_rep	three_prime_UTR	32783503	32783826	.	-	.	Parent=Os03t0788800-01
Chr03	irgsp1_rep	mRNA	32791645	32798572	.	-	.	ID=Os03t0789000-00;Name=Os03t0789000-00;Locus_id=Os03g0789000;CGSNL Gene Symbol=CDPK11;CGSNL Gene Name=CALCIUM-DEPENDENT PROTEIN KINASE 11;Oryzabase Gene Symbol Synonym(s)=OsCDPK11%2C OsCPK11;Note=Similar to Calcium-dependent protein kinase.;Transcript_evidence=EU181187 (DDBJ);ORF_evidence=B2KTA6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Calcium-binding EF-hand (IPR002048),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),EF-hand-like domain (IPR011992),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=6744;TENOR=Os03t0789000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	32798183	32798572	.	-	0	Parent=Os03t0789000-00
Chr03	irgsp1_rep	CDS	32794189	32794639	.	-	0	Parent=Os03t0789000-00
Chr03	irgsp1_rep	CDS	32793193	32793336	.	-	2	Parent=Os03t0789000-00
Chr03	irgsp1_rep	CDS	32792954	32793106	.	-	2	Parent=Os03t0789000-00
Chr03	irgsp1_rep	CDS	32792745	32792860	.	-	2	Parent=Os03t0789000-00
Chr03	irgsp1_rep	CDS	32792495	32792662	.	-	0	Parent=Os03t0789000-00
Chr03	irgsp1_rep	CDS	32791845	32792069	.	-	0	Parent=Os03t0789000-00
Chr03	irgsp1_rep	CDS	32791645	32791767	.	-	0	Parent=Os03t0789000-00
Chr03	irgsp1_rep	mRNA	32800595	32802990	.	-	.	ID=Os03t0789200-01;Name=Os03t0789200-01;Locus_id=Os03g0789200;Oryzabase Gene Name Synonym(s)=heavy meromyosin-like protein;Note=Protein of unknown function DUF593 family protein.;Transcript_evidence=AK071787 (DDBJ%2C Best hit);ORF_evidence=A2XMR1 (UniProt);InterPro=Protein of unknown function DUF593 (IPR007656);NIAS_FLcDNA=J023110P10;Oryzabase=16280;Expression=AK071787;TENOR=Os03t0789200-01;KEGG=Os03t0789200-01
Chr03	irgsp1_rep	five_prime_UTR	32802837	32802990	.	-	.	Parent=Os03t0789200-01
Chr03	irgsp1_rep	CDS	32801916	32802836	.	-	0	Parent=Os03t0789200-01
Chr03	irgsp1_rep	CDS	32801087	32801133	.	-	0	Parent=Os03t0789200-01
Chr03	irgsp1_rep	CDS	32800893	32800995	.	-	1	Parent=Os03t0789200-01
Chr03	irgsp1_rep	three_prime_UTR	32800595	32800892	.	-	.	Parent=Os03t0789200-01
Chr03	irgsp1_rep	mRNA	32810937	32811892	.	-	.	ID=Os03t0789433-01;Name=Os03t0789433-01;Locus_id=Os03g0789433;Note=Hypothetical conserved gene.;Transcript_evidence=AK287964 (DDBJ%2C Best hit);ORF_evidence=NP_001174812.1 (RefSeq);NIAS_FLcDNA=J075066B11;TENOR=Os03t0789433-01;KEGG=Os03t0789433-01
Chr03	irgsp1_rep	five_prime_UTR	32811892	32811892	.	-	.	Parent=Os03t0789433-01
Chr03	irgsp1_rep	CDS	32811620	32811891	.	-	0	Parent=Os03t0789433-01
Chr03	irgsp1_rep	CDS	32811142	32811538	.	-	1	Parent=Os03t0789433-01
Chr03	irgsp1_rep	three_prime_UTR	32810937	32811141	.	-	.	Parent=Os03t0789433-01
Chr03	irgsp1_rep	mRNA	32810544	32819095	.	+	.	ID=Os03t0789466-00;Name=Os03t0789466-00;Locus_id=Os03g0789466;Note=Similar to Protein argonaute MEL1.;Transcript_evidence=AK374742 (DDBJ);ORF_evidence=Q851R2 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515);InterPro=Argonaute/Dicer protein%2C PAZ (IPR003100),Stem cell self-renewal protein Piwi (IPR003165),Ribonuclease H-like (IPR012337),Domain of unknown function DUF1785 (IPR014811);TENOR=Os03t0789466-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	32810544	32810684	.	+	.	Parent=Os03t0789466-00
Chr03	irgsp1_rep	five_prime_UTR	32814466	32814671	.	+	.	Parent=Os03t0789466-00
Chr03	irgsp1_rep	five_prime_UTR	32814756	32814895	.	+	.	Parent=Os03t0789466-00
Chr03	irgsp1_rep	CDS	32814896	32814909	.	+	0	Parent=Os03t0789466-00
Chr03	irgsp1_rep	CDS	32815005	32815138	.	+	1	Parent=Os03t0789466-00
Chr03	irgsp1_rep	CDS	32815229	32815338	.	+	2	Parent=Os03t0789466-00
Chr03	irgsp1_rep	CDS	32815410	32815516	.	+	0	Parent=Os03t0789466-00
Chr03	irgsp1_rep	CDS	32815973	32816111	.	+	1	Parent=Os03t0789466-00
Chr03	irgsp1_rep	CDS	32816190	32816306	.	+	0	Parent=Os03t0789466-00
Chr03	irgsp1_rep	CDS	32816498	32816605	.	+	0	Parent=Os03t0789466-00
Chr03	irgsp1_rep	CDS	32816694	32816765	.	+	0	Parent=Os03t0789466-00
Chr03	irgsp1_rep	CDS	32817031	32817150	.	+	0	Parent=Os03t0789466-00
Chr03	irgsp1_rep	CDS	32817232	32817397	.	+	0	Parent=Os03t0789466-00
Chr03	irgsp1_rep	CDS	32817481	32817602	.	+	2	Parent=Os03t0789466-00
Chr03	irgsp1_rep	CDS	32817723	32817861	.	+	0	Parent=Os03t0789466-00
Chr03	irgsp1_rep	CDS	32818050	32818075	.	+	2	Parent=Os03t0789466-00
Chr03	irgsp1_rep	three_prime_UTR	32818076	32818189	.	+	.	Parent=Os03t0789466-00
Chr03	irgsp1_rep	three_prime_UTR	32818274	32818336	.	+	.	Parent=Os03t0789466-00
Chr03	irgsp1_rep	three_prime_UTR	32818416	32818479	.	+	.	Parent=Os03t0789466-00
Chr03	irgsp1_rep	three_prime_UTR	32818575	32818710	.	+	.	Parent=Os03t0789466-00
Chr03	irgsp1_rep	three_prime_UTR	32818815	32818888	.	+	.	Parent=Os03t0789466-00
Chr03	irgsp1_rep	three_prime_UTR	32818984	32819095	.	+	.	Parent=Os03t0789466-00
Chr03	irgsp1_rep	mRNA	32820606	32822978	.	+	.	ID=Os03t0789500-01;Name=Os03t0789500-01;Locus_id=Os03g0789500;CGSNL Gene Symbol=AGO13;CGSNL Gene Name=ARGONAUTE 13;Oryzabase Gene Symbol Synonym(s)=OsAGO13;Oryzabase Gene Name Synonym(s)=Protein argonaute 13;Note=Similar to Protein argonaute 13.;Transcript_evidence=AK059333 (DDBJ%2C Best hit);ORF_evidence=Q852N2 (UniProt);NIAS_FLcDNA=001-026-A09;Oryzabase=8262;Expression=AK059333;TENOR=Os03t0789500-01;KEGG=Os03t0789500-01
Chr03	irgsp1_rep	five_prime_UTR	32820606	32820606	.	+	.	Parent=Os03t0789500-01
Chr03	irgsp1_rep	CDS	32820607	32821137	.	+	0	Parent=Os03t0789500-01
Chr03	irgsp1_rep	CDS	32821229	32821381	.	+	0	Parent=Os03t0789500-01
Chr03	irgsp1_rep	three_prime_UTR	32821382	32821387	.	+	.	Parent=Os03t0789500-01
Chr03	irgsp1_rep	three_prime_UTR	32822526	32822978	.	+	.	Parent=Os03t0789500-01
Chr03	irgsp1_rep	mRNA	32826350	32828545	.	-	.	ID=Os03t0789600-01;Name=Os03t0789600-01;Locus_id=Os03g0789600;Note=Conserved hypothetical protein.;Transcript_evidence=AK106967 (DDBJ%2C Best hit);ORF_evidence=Q5Z5C8 (UniProt);NIAS_FLcDNA=002-119-F12;TENOR=Os03t0789600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	32827344	32828545	.	-	.	Parent=Os03t0789600-01
Chr03	irgsp1_rep	CDS	32827245	32827343	.	-	0	Parent=Os03t0789600-01
Chr03	irgsp1_rep	three_prime_UTR	32826350	32827244	.	-	.	Parent=Os03t0789600-01
Chr03	irgsp1_rep	mRNA	32829161	32832483	.	-	.	ID=Os03t0789800-01;Name=Os03t0789800-01;Locus_id=Os03g0789800;Note=Hypothetical conserved gene.;Transcript_evidence=AK067287 (DDBJ%2C Best hit);ORF_evidence=Q10CA2 (UniProt);NIAS_FLcDNA=J013101K12;Expression=AK067287;TENOR=Os03t0789800-01;KEGG=Os03t0789800-01
Chr03	irgsp1_rep	five_prime_UTR	32831721	32832483	.	-	.	Parent=Os03t0789800-01
Chr03	irgsp1_rep	five_prime_UTR	32830832	32830942	.	-	.	Parent=Os03t0789800-01
Chr03	irgsp1_rep	five_prime_UTR	32830009	32830712	.	-	.	Parent=Os03t0789800-01
Chr03	irgsp1_rep	CDS	32829808	32830008	.	-	0	Parent=Os03t0789800-01
Chr03	irgsp1_rep	three_prime_UTR	32829161	32829807	.	-	.	Parent=Os03t0789800-01
Chr03	irgsp1_rep	mRNA	32829837	32832470	.	-	.	ID=Os03t0789800-02;Name=Os03t0789800-02;Locus_id=Os03g0789800;Note=Conserved hypothetical protein.;Transcript_evidence=AK120138 (DDBJ%2C Best hit);ORF_evidence=Q10CA2 (UniProt);NIAS_FLcDNA=J013027L14;TENOR=Os03t0789800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	32832133	32832470	.	-	.	Parent=Os03t0789800-02
Chr03	irgsp1_rep	five_prime_UTR	32831721	32831784	.	-	.	Parent=Os03t0789800-02
Chr03	irgsp1_rep	five_prime_UTR	32830832	32830942	.	-	.	Parent=Os03t0789800-02
Chr03	irgsp1_rep	five_prime_UTR	32830648	32830712	.	-	.	Parent=Os03t0789800-02
Chr03	irgsp1_rep	CDS	32830617	32830647	.	-	0	Parent=Os03t0789800-02
Chr03	irgsp1_rep	CDS	32829837	32829980	.	-	2	Parent=Os03t0789800-02
Chr03	irgsp1_rep	mRNA	32832645	32834479	.	-	.	ID=Os03t0789900-01;Name=Os03t0789900-01;Locus_id=Os03g0789900;Note=Protein of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK106804 (DDBJ%2C Best hit);ORF_evidence=NP_001051513.1 (RefSeq);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=002-116-C02;TENOR=Os03t0789900-01;KEGG=Os03t0789900-01
Chr03	irgsp1_rep	five_prime_UTR	32834193	32834479	.	-	.	Parent=Os03t0789900-01
Chr03	irgsp1_rep	CDS	32833071	32834192	.	-	0	Parent=Os03t0789900-01
Chr03	irgsp1_rep	CDS	32832919	32832924	.	-	0	Parent=Os03t0789900-01
Chr03	irgsp1_rep	three_prime_UTR	32832645	32832918	.	-	.	Parent=Os03t0789900-01
Chr03	irgsp1_rep	mRNA	32833204	32834919	.	+	.	ID=Os03t0790000-01;Name=Os03t0790000-01;Locus_id=Os03g0790000;Note=Hypothetical protein.;Transcript_evidence=AK105547 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-128-A06;Expression=AK105547;TENOR=Os03t0790000-01;KEGG=Os03t0790000-01
Chr03	irgsp1_rep	five_prime_UTR	32833204	32833397	.	+	.	Parent=Os03t0790000-01
Chr03	irgsp1_rep	five_prime_UTR	32833479	32833650	.	+	.	Parent=Os03t0790000-01
Chr03	irgsp1_rep	CDS	32833651	32834733	.	+	0	Parent=Os03t0790000-01
Chr03	irgsp1_rep	three_prime_UTR	32834734	32834919	.	+	.	Parent=Os03t0790000-01
Chr03	irgsp1_rep	mRNA	32851444	32852765	.	+	.	ID=Os03t0790500-01;Name=Os03t0790500-01;Locus_id=Os03g0790500;Oryzabase Gene Symbol Synonym(s)=GID1%2C GID1L2;Oryzabase Gene Name Synonym(s)=ga insensitive dwarf1%2C ga insensitive dwarf 1;Note=Alpha/beta hydrolase fold-3 domain containing protein.;Transcript_evidence=AK107136 (DDBJ%2C Best hit);ORF_evidence=NP_001148081.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Lipase%2C GDXG%2C active site (IPR002168),Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=002-124-C10;Oryzabase=16801;Expression=AK107136;TENOR=Os03t0790500-01;KEGG=Os03t0790500-01
Chr03	irgsp1_rep	five_prime_UTR	32851444	32851471	.	+	.	Parent=Os03t0790500-01
Chr03	irgsp1_rep	CDS	32851472	32852554	.	+	0	Parent=Os03t0790500-01
Chr03	irgsp1_rep	three_prime_UTR	32852555	32852765	.	+	.	Parent=Os03t0790500-01
Chr03	irgsp1_rep	mRNA	32859108	32866526	.	-	.	ID=Os03t0790551-00;Name=Os03t0790551-00;Locus_id=Os03g0790551;Note=Hypothetical protein.;Transcript_evidence=tplb0053a18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0790551-00
Chr03	irgsp1_rep	five_prime_UTR	32866267	32866526	.	-	.	Parent=Os03t0790551-00
Chr03	irgsp1_rep	five_prime_UTR	32865939	32866067	.	-	.	Parent=Os03t0790551-00
Chr03	irgsp1_rep	five_prime_UTR	32865363	32865474	.	-	.	Parent=Os03t0790551-00
Chr03	irgsp1_rep	CDS	32865333	32865362	.	-	0	Parent=Os03t0790551-00
Chr03	irgsp1_rep	CDS	32864906	32864982	.	-	0	Parent=Os03t0790551-00
Chr03	irgsp1_rep	CDS	32864546	32864641	.	-	1	Parent=Os03t0790551-00
Chr03	irgsp1_rep	CDS	32864105	32864171	.	-	1	Parent=Os03t0790551-00
Chr03	irgsp1_rep	CDS	32861853	32861864	.	-	0	Parent=Os03t0790551-00
Chr03	irgsp1_rep	three_prime_UTR	32861787	32861852	.	-	.	Parent=Os03t0790551-00
Chr03	irgsp1_rep	three_prime_UTR	32861490	32861641	.	-	.	Parent=Os03t0790551-00
Chr03	irgsp1_rep	three_prime_UTR	32860961	32861204	.	-	.	Parent=Os03t0790551-00
Chr03	irgsp1_rep	three_prime_UTR	32859108	32860061	.	-	.	Parent=Os03t0790551-00
Chr03	irgsp1_rep	mRNA	32859014	32866518	.	+	.	ID=Os03t0790600-01;Name=Os03t0790600-01;Locus_id=Os03g0790600;RAP-DB Gene Symbol Synonym(s)=GO%2C go%2C go1%2C pla3%2C PLA3%2C PLA3/GO;RAP-DB Gene Name Synonym(s)=GOLIATH%2C goliath%2C PLASTOCHRON 3%2C plastoChron3%2C PLASTOCHRON3/GOLIATH;CGSNL Gene Symbol=GO;CGSNL Gene Name=GOLIATH;Oryzabase Gene Symbol Synonym(s)=go%2C go1%2C pla3%2C PLA3%2C PLA3/GO%2C OsLBD3-7%2C LBD3-7;Oryzabase Gene Name Synonym(s)=goliath%2C PLASTOCHRON 3%2C plastoChron3%2C PLASTOCHRON3/GOLIATH%2C lateral organ boundaries domain 3-7;Note=Glutamate carboxypeptidase%2C Hormone homeostasis%2C Regulation of developmental processes;Transcript_evidence=AB447403;ORF_evidence=Q852M4;InterPro=Peptidase M28 (IPR007484),Transferrin receptor-like%2C dimerisation domain (IPR007365);Manual Curation=December 9%2C 2015;Literature_PMID=19228340;Oryzabase=2945;TENOR=Os03t0790600-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	32859014	32860063	.	+	0	Parent=Os03t0790600-01
Chr03	irgsp1_rep	CDS	32860963	32861205	.	+	0	Parent=Os03t0790600-01
Chr03	irgsp1_rep	CDS	32861422	32861643	.	+	0	Parent=Os03t0790600-01
Chr03	irgsp1_rep	CDS	32861789	32861857	.	+	0	Parent=Os03t0790600-01
Chr03	irgsp1_rep	CDS	32864095	32864182	.	+	0	Parent=Os03t0790600-01
Chr03	irgsp1_rep	CDS	32864561	32864644	.	+	2	Parent=Os03t0790600-01
Chr03	irgsp1_rep	CDS	32864908	32864996	.	+	2	Parent=Os03t0790600-01
Chr03	irgsp1_rep	CDS	32865347	32865460	.	+	0	Parent=Os03t0790600-01
Chr03	irgsp1_rep	CDS	32865927	32866061	.	+	0	Parent=Os03t0790600-01
Chr03	irgsp1_rep	CDS	32866261	32866485	.	+	0	Parent=Os03t0790600-01
Chr03	irgsp1_rep	three_prime_UTR	32866486	32866518	.	+	.	Parent=Os03t0790600-01
Chr03	irgsp1_rep	mRNA	32862837	32866525	.	+	.	ID=Os03t0790600-02;Name=Os03t0790600-02;Locus_id=Os03g0790600;CGSNL Gene Symbol=GO;CGSNL Gene Name=GOLIATH;Oryzabase Gene Symbol Synonym(s)=go%2C go1%2C pla3%2C PLA3%2C PLA3/GO%2C OsLBD3-7%2C LBD3-7;Oryzabase Gene Name Synonym(s)=goliath%2C PLASTOCHRON 3%2C plastoChron3%2C PLASTOCHRON3/GOLIATH%2C lateral organ boundaries domain 3-7;Note=Similar to predicted protein.;Transcript_evidence=AK106495 (DDBJ%2C Best hit);ORF_evidence=NP_001120724.1 (RefSeq);InterPro=Transferrin receptor-like%2C dimerisation domain (IPR007365);NIAS_FLcDNA=002-105-D02;Oryzabase=2945;Expression=AK106495;TENOR=Os03t0790600-02;KEGG=Os03t0790600-02 (EC:3.4.17.21)
Chr03	irgsp1_rep	five_prime_UTR	32862837	32864082	.	+	.	Parent=Os03t0790600-02
Chr03	irgsp1_rep	CDS	32864083	32864182	.	+	0	Parent=Os03t0790600-02
Chr03	irgsp1_rep	CDS	32864561	32864644	.	+	2	Parent=Os03t0790600-02
Chr03	irgsp1_rep	CDS	32864908	32864996	.	+	2	Parent=Os03t0790600-02
Chr03	irgsp1_rep	CDS	32865347	32865460	.	+	0	Parent=Os03t0790600-02
Chr03	irgsp1_rep	CDS	32865927	32866061	.	+	0	Parent=Os03t0790600-02
Chr03	irgsp1_rep	CDS	32866261	32866485	.	+	0	Parent=Os03t0790600-02
Chr03	irgsp1_rep	three_prime_UTR	32866486	32866525	.	+	.	Parent=Os03t0790600-02
Chr03	irgsp1_rep	mRNA	32864591	32869085	.	+	.	ID=Os03t0790600-03;Name=Os03t0790600-03;Locus_id=Os03g0790600;CGSNL Gene Symbol=GO;CGSNL Gene Name=GOLIATH;Oryzabase Gene Symbol Synonym(s)=go%2C go1%2C pla3%2C PLA3%2C PLA3/GO%2C OsLBD3-7%2C LBD3-7;Oryzabase Gene Name Synonym(s)=goliath%2C PLASTOCHRON 3%2C plastoChron3%2C PLASTOCHRON3/GOLIATH%2C lateral organ boundaries domain 3-7;Note=Similar to predicted protein.;Transcript_evidence=AK063229 (DDBJ%2C Best hit);ORF_evidence=NP_001120724.1 (RefSeq);InterPro=Transferrin receptor-like%2C dimerisation domain (IPR007365);NIAS_FLcDNA=001-112-F03;Oryzabase=2945;Expression=AK063229;TENOR=Os03t0790600-03;KEGG=Os03t0790600-03
Chr03	irgsp1_rep	five_prime_UTR	32864591	32864592	.	+	.	Parent=Os03t0790600-03
Chr03	irgsp1_rep	CDS	32864593	32864644	.	+	0	Parent=Os03t0790600-03
Chr03	irgsp1_rep	CDS	32864908	32864996	.	+	2	Parent=Os03t0790600-03
Chr03	irgsp1_rep	CDS	32865347	32865460	.	+	0	Parent=Os03t0790600-03
Chr03	irgsp1_rep	CDS	32865927	32866061	.	+	0	Parent=Os03t0790600-03
Chr03	irgsp1_rep	CDS	32866261	32866380	.	+	0	Parent=Os03t0790600-03
Chr03	irgsp1_rep	CDS	32868689	32868714	.	+	0	Parent=Os03t0790600-03
Chr03	irgsp1_rep	CDS	32868917	32869037	.	+	1	Parent=Os03t0790600-03
Chr03	irgsp1_rep	three_prime_UTR	32869038	32869085	.	+	.	Parent=Os03t0790600-03
Chr03	irgsp1_rep	mRNA	32869350	32877275	.	-	.	ID=Os03t0790700-01;Name=Os03t0790700-01;Locus_id=Os03g0790700;Oryzabase Gene Symbol Synonym(s)=AO;Oryzabase Gene Name Synonym(s)=aldehyde oxidase;Note=Aldehyde oxidase-2.;Transcript_evidence=AK242113 (DDBJ%2C Best hit);ORF_evidence=O23888 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: metal ion binding (GO:0046872),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: iron-sulfur cluster binding (GO:0051536),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=Aldehyde oxidase/xanthine dehydrogenase%2C a/b hammerhead (IPR000674),Ferredoxin (IPR001041),Molybdopterin dehydrogenase%2C FAD-binding (IPR002346),[2Fe-2S]-binding (IPR002888),CO dehydrogenase flavoprotein%2C C-terminal (IPR005107),2Fe-2S ferredoxin%2C iron-sulphur binding site (IPR006058),Aldehyde oxidase/xanthine dehydrogenase%2C molybdopterin binding (IPR008274),Beta-grasp fold%2C ferredoxin-type (IPR012675),FAD-binding%2C type 2 (IPR016166),CO dehydrogenase flavoprotein-like%2C FAD-binding%2C subdomain 2 (IPR016169),Aldehyde oxidase/xanthine dehydrogenase (IPR016208);NIAS_FLcDNA=J075146F08;Oryzabase=20887;TENOR=Os03t0790700-01;KEGG=Os03t0790700-01
Chr03	irgsp1_rep	five_prime_UTR	32877207	32877275	.	-	.	Parent=Os03t0790700-01
Chr03	irgsp1_rep	CDS	32877053	32877206	.	-	0	Parent=Os03t0790700-01
Chr03	irgsp1_rep	CDS	32873019	32874695	.	-	2	Parent=Os03t0790700-01
Chr03	irgsp1_rep	CDS	32872655	32872917	.	-	2	Parent=Os03t0790700-01
Chr03	irgsp1_rep	CDS	32872325	32872534	.	-	0	Parent=Os03t0790700-01
Chr03	irgsp1_rep	CDS	32871890	32872108	.	-	0	Parent=Os03t0790700-01
Chr03	irgsp1_rep	CDS	32870614	32871567	.	-	0	Parent=Os03t0790700-01
Chr03	irgsp1_rep	CDS	32870331	32870426	.	-	0	Parent=Os03t0790700-01
Chr03	irgsp1_rep	CDS	32870096	32870194	.	-	0	Parent=Os03t0790700-01
Chr03	irgsp1_rep	CDS	32869775	32869964	.	-	0	Parent=Os03t0790700-01
Chr03	irgsp1_rep	CDS	32869482	32869690	.	-	2	Parent=Os03t0790700-01
Chr03	irgsp1_rep	three_prime_UTR	32869350	32869481	.	-	.	Parent=Os03t0790700-01
Chr03	irgsp1_rep	mRNA	32873016	32873925	.	+	.	ID=Os03t0790801-00;Name=Os03t0790801-00;Locus_id=Os03g0790801;Note=Hypothetical gene.;Transcript_evidence=EU944577 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0790801-00;KEGG=Os03t0790801-00
Chr03	irgsp1_rep	five_prime_UTR	32873016	32873124	.	+	.	Parent=Os03t0790801-00
Chr03	irgsp1_rep	five_prime_UTR	32873248	32873569	.	+	.	Parent=Os03t0790801-00
Chr03	irgsp1_rep	CDS	32873570	32873824	.	+	0	Parent=Os03t0790801-00
Chr03	irgsp1_rep	three_prime_UTR	32873825	32873925	.	+	.	Parent=Os03t0790801-00
Chr03	irgsp1_rep	mRNA	32879395	32886450	.	-	.	ID=Os03t0790900-01;Name=Os03t0790900-01;Locus_id=Os03g0790900;Oryzabase Gene Symbol Synonym(s)=AAO3%2C OsAAO3%2C OsAO1%2C AO1;Oryzabase Gene Name Synonym(s)=Indole-3-acetaldehyde oxidase 3%2C aldehyde oxidase 1;Note=Similar to Aldehyde oxidase-2.;Transcript_evidence=AK100342 (DDBJ%2C Best hit);ORF_evidence=O23888 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: metal ion binding (GO:0046872),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: iron-sulfur cluster binding (GO:0051536),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=Aldehyde oxidase/xanthine dehydrogenase%2C a/b hammerhead (IPR000674),Ferredoxin (IPR001041),Molybdopterin dehydrogenase%2C FAD-binding (IPR002346),[2Fe-2S]-binding (IPR002888),CO dehydrogenase flavoprotein%2C C-terminal (IPR005107),2Fe-2S ferredoxin%2C iron-sulphur binding site (IPR006058),Aldehyde oxidase/xanthine dehydrogenase%2C molybdopterin binding (IPR008274),Beta-grasp fold%2C ferredoxin-type (IPR012675),FAD-binding%2C type 2 (IPR016166),CO dehydrogenase flavoprotein-like%2C FAD-binding%2C subdomain 2 (IPR016169),Aldehyde oxidase/xanthine dehydrogenase (IPR016208);NIAS_FLcDNA=J023082B09;Oryzabase=18083;Expression=AK100342;TENOR=Os03t0790900-01;KEGG=Os03t0790900-01
Chr03	irgsp1_rep	five_prime_UTR	32886327	32886450	.	-	.	Parent=Os03t0790900-01
Chr03	irgsp1_rep	CDS	32886116	32886326	.	-	0	Parent=Os03t0790900-01
Chr03	irgsp1_rep	CDS	32883455	32885131	.	-	2	Parent=Os03t0790900-01
Chr03	irgsp1_rep	CDS	32883031	32883293	.	-	2	Parent=Os03t0790900-01
Chr03	irgsp1_rep	CDS	32882696	32882905	.	-	0	Parent=Os03t0790900-01
Chr03	irgsp1_rep	CDS	32882097	32882315	.	-	0	Parent=Os03t0790900-01
Chr03	irgsp1_rep	CDS	32880822	32881775	.	-	0	Parent=Os03t0790900-01
Chr03	irgsp1_rep	CDS	32880413	32880508	.	-	0	Parent=Os03t0790900-01
Chr03	irgsp1_rep	CDS	32880178	32880276	.	-	0	Parent=Os03t0790900-01
Chr03	irgsp1_rep	CDS	32879857	32880046	.	-	0	Parent=Os03t0790900-01
Chr03	irgsp1_rep	CDS	32879566	32879774	.	-	2	Parent=Os03t0790900-01
Chr03	irgsp1_rep	three_prime_UTR	32879395	32879565	.	-	.	Parent=Os03t0790900-01
Chr03	irgsp1_rep	mRNA	32879424	32884577	.	-	.	ID=Os03t0790900-02;Name=Os03t0790900-02;Locus_id=Os03g0790900;Oryzabase Gene Symbol Synonym(s)=AAO3%2C OsAAO3%2C OsAO1%2C AO1;Oryzabase Gene Name Synonym(s)=Indole-3-acetaldehyde oxidase 3%2C aldehyde oxidase 1;Note=Similar to aldehyde oxidase-2.;Transcript_evidence=AK121857 (DDBJ%2C Best hit);ORF_evidence=O23888 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Aldehyde oxidase/xanthine dehydrogenase%2C a/b hammerhead (IPR000674),Molybdopterin dehydrogenase%2C FAD-binding (IPR002346),CO dehydrogenase flavoprotein%2C C-terminal (IPR005107),Aldehyde oxidase/xanthine dehydrogenase%2C molybdopterin binding (IPR008274),FAD-binding%2C type 2 (IPR016166),CO dehydrogenase flavoprotein-like%2C FAD-binding%2C subdomain 2 (IPR016169);NIAS_FLcDNA=J033102I02;Oryzabase=18083;TENOR=Os03t0790900-02
Chr03	irgsp1_rep	CDS	32883455	32884577	.	-	0	Parent=Os03t0790900-02
Chr03	irgsp1_rep	CDS	32883031	32883293	.	-	2	Parent=Os03t0790900-02
Chr03	irgsp1_rep	CDS	32882696	32882905	.	-	0	Parent=Os03t0790900-02
Chr03	irgsp1_rep	CDS	32882097	32882315	.	-	0	Parent=Os03t0790900-02
Chr03	irgsp1_rep	CDS	32880822	32881775	.	-	0	Parent=Os03t0790900-02
Chr03	irgsp1_rep	CDS	32880413	32880508	.	-	0	Parent=Os03t0790900-02
Chr03	irgsp1_rep	CDS	32880178	32880276	.	-	0	Parent=Os03t0790900-02
Chr03	irgsp1_rep	CDS	32879857	32880046	.	-	0	Parent=Os03t0790900-02
Chr03	irgsp1_rep	CDS	32879566	32879774	.	-	2	Parent=Os03t0790900-02
Chr03	irgsp1_rep	three_prime_UTR	32879424	32879565	.	-	.	Parent=Os03t0790900-02
Chr03	irgsp1_rep	mRNA	32879435	32881230	.	-	.	ID=Os03t0790900-03;Name=Os03t0790900-03;Locus_id=Os03g0790900;Oryzabase Gene Symbol Synonym(s)=AAO3%2C OsAAO3%2C OsAO1%2C AO1;Oryzabase Gene Name Synonym(s)=Indole-3-acetaldehyde oxidase 3%2C aldehyde oxidase 1;Note=Similar to aldehyde oxidase-2.;Transcript_evidence=AK059698 (DDBJ%2C Best hit);ORF_evidence=O23888 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldehyde oxidase/xanthine dehydrogenase%2C molybdopterin binding (IPR008274);NIAS_FLcDNA=001-032-C05;Oryzabase=18083;Expression=AK059698;TENOR=Os03t0790900-03;KEGG=Os03t0790900-03
Chr03	irgsp1_rep	five_prime_UTR	32881230	32881230	.	-	.	Parent=Os03t0790900-03
Chr03	irgsp1_rep	CDS	32880822	32881229	.	-	0	Parent=Os03t0790900-03
Chr03	irgsp1_rep	CDS	32880413	32880508	.	-	0	Parent=Os03t0790900-03
Chr03	irgsp1_rep	CDS	32880178	32880276	.	-	0	Parent=Os03t0790900-03
Chr03	irgsp1_rep	CDS	32879857	32880046	.	-	0	Parent=Os03t0790900-03
Chr03	irgsp1_rep	CDS	32879566	32879774	.	-	2	Parent=Os03t0790900-03
Chr03	irgsp1_rep	three_prime_UTR	32879435	32879565	.	-	.	Parent=Os03t0790900-03
Chr03	irgsp1_rep	mRNA	32879424	32884185	.	-	.	ID=Os03t0790900-04;Name=Os03t0790900-04;Locus_id=Os03g0790900;Oryzabase Gene Symbol Synonym(s)=AAO3%2C OsAAO3%2C OsAO1%2C AO1;Oryzabase Gene Name Synonym(s)=Indole-3-acetaldehyde oxidase 3%2C aldehyde oxidase 1;Note=Similar to Aldehyde oxidase-2.;Transcript_evidence=AK065990 (DDBJ%2C Best hit);ORF_evidence=O23888 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Aldehyde oxidase/xanthine dehydrogenase%2C a/b hammerhead (IPR000674),Molybdopterin dehydrogenase%2C FAD-binding (IPR002346),CO dehydrogenase flavoprotein%2C C-terminal (IPR005107),Aldehyde oxidase/xanthine dehydrogenase%2C molybdopterin binding (IPR008274),FAD-binding%2C type 2 (IPR016166);NIAS_FLcDNA=J013044D18;Oryzabase=18083;TENOR=Os03t0790900-04
Chr03	irgsp1_rep	five_prime_UTR	32884185	32884185	.	-	.	Parent=Os03t0790900-04
Chr03	irgsp1_rep	CDS	32883455	32884184	.	-	0	Parent=Os03t0790900-04
Chr03	irgsp1_rep	CDS	32883031	32883293	.	-	2	Parent=Os03t0790900-04
Chr03	irgsp1_rep	CDS	32882696	32882905	.	-	0	Parent=Os03t0790900-04
Chr03	irgsp1_rep	CDS	32882097	32882315	.	-	0	Parent=Os03t0790900-04
Chr03	irgsp1_rep	CDS	32880822	32881775	.	-	0	Parent=Os03t0790900-04
Chr03	irgsp1_rep	CDS	32880413	32880508	.	-	0	Parent=Os03t0790900-04
Chr03	irgsp1_rep	CDS	32880178	32880276	.	-	0	Parent=Os03t0790900-04
Chr03	irgsp1_rep	CDS	32879857	32880046	.	-	0	Parent=Os03t0790900-04
Chr03	irgsp1_rep	CDS	32879566	32879774	.	-	2	Parent=Os03t0790900-04
Chr03	irgsp1_rep	three_prime_UTR	32879424	32879565	.	-	.	Parent=Os03t0790900-04
Chr03	irgsp1_rep	mRNA	32883443	32884361	.	+	.	ID=Os03t0791050-00;Name=Os03t0791050-00;Locus_id=Os03g0791050;Note=Hypothetical gene.;Transcript_evidence=EU944577 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0791050-00;KEGG=Os03t0791050-00
Chr03	irgsp1_rep	five_prime_UTR	32883443	32883560	.	+	.	Parent=Os03t0791050-00
Chr03	irgsp1_rep	five_prime_UTR	32883684	32883843	.	+	.	Parent=Os03t0791050-00
Chr03	irgsp1_rep	CDS	32883844	32884260	.	+	0	Parent=Os03t0791050-00
Chr03	irgsp1_rep	three_prime_UTR	32884261	32884361	.	+	.	Parent=Os03t0791050-00
Chr03	irgsp1_rep	mRNA	32897226	32898262	.	-	.	ID=Os03t0791200-00;Name=Os03t0791200-00;Locus_id=Os03g0791200;Note=Similar to Aldehyde oxidase 1 (Fragment).;Transcript_evidence=CT833526 (DDBJ%2C Best hit);ORF_evidence=A6N0U6 (UniProt);TENOR=Os03t0791200-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	32898261	32898262	.	-	.	Parent=Os03t0791200-00
Chr03	irgsp1_rep	CDS	32898204	32898260	.	-	0	Parent=Os03t0791200-00
Chr03	irgsp1_rep	CDS	32897829	32898098	.	-	0	Parent=Os03t0791200-00
Chr03	irgsp1_rep	three_prime_UTR	32897226	32897828	.	-	.	Parent=Os03t0791200-00
Chr03	irgsp1_rep	mRNA	32902895	32907293	.	+	.	ID=Os03t0791300-00;Name=Os03t0791300-00;Locus_id=Os03g0791300;CGSNL Gene Symbol=UCL10;CGSNL Gene Name=UCLACYANIN-LIKE PROTEIN 10;Oryzabase Gene Symbol Synonym(s)=OsUCL10;Oryzabase Gene Name Synonym(s)=uclacyanin-like protein 10;Note=Similar to blue copper protein.;Transcript_evidence=FP101340 (DDBJ);ORF_evidence=NP_001152236.1 (RefSeq);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Multicopper oxidase%2C copper-binding site (IPR002355),Plastocyanin-like (IPR003245),Twin-arginine translocation pathway%2C signal sequence (IPR006311),Cupredoxin (IPR008972);Oryzabase=9759;TENOR=Os03t0791300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	32902895	32903087	.	+	0	Parent=Os03t0791300-00
Chr03	irgsp1_rep	CDS	32903192	32903400	.	+	2	Parent=Os03t0791300-00
Chr03	irgsp1_rep	three_prime_UTR	32903401	32903403	.	+	.	Parent=Os03t0791300-00
Chr03	irgsp1_rep	three_prime_UTR	32907113	32907293	.	+	.	Parent=Os03t0791300-00
Chr03	irgsp1_rep	mRNA	32907101	32907751	.	-	.	ID=Os03t0791366-00;Name=Os03t0791366-00;Locus_id=Os03g0791366;CGSNL Gene Symbol=UCL11;CGSNL Gene Name=UCLACYANIN-LIKE PROTEIN 11;Oryzabase Gene Symbol Synonym(s)=OsUCL11;Oryzabase Gene Name Synonym(s)=uclacyanin-like protein 11;Note=Plastocyanin-like domain containing protein.;Transcript_evidence=AK248395 (DDBJ);ORF_evidence=Q852J1 (UniProt);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);Oryzabase=9760;TENOR=Os03t0791366-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	32907738	32907751	.	-	.	Parent=Os03t0791366-00
Chr03	irgsp1_rep	CDS	32907560	32907737	.	-	0	Parent=Os03t0791366-00
Chr03	irgsp1_rep	CDS	32907101	32907441	.	-	2	Parent=Os03t0791366-00
Chr03	irgsp1_rep	mRNA	32909846	32910736	.	+	.	ID=Os03t0791432-01;Name=Os03t0791432-01;Locus_id=Os03g0791432;Note=Expressed protein.;Transcript_evidence=AK243290 (DDBJ%2C Best hit);ORF_evidence=NP_001173664.1 (RefSeq);NIAS_FLcDNA=J100052M17;TENOR=Os03t0791432-01;KEGG=Os03t0791432-01
Chr03	irgsp1_rep	five_prime_UTR	32909846	32909979	.	+	.	Parent=Os03t0791432-01
Chr03	irgsp1_rep	CDS	32909980	32910336	.	+	0	Parent=Os03t0791432-01
Chr03	irgsp1_rep	three_prime_UTR	32910337	32910736	.	+	.	Parent=Os03t0791432-01
Chr03	irgsp1_rep	mRNA	32911242	32915158	.	-	.	ID=Os03t0791500-01;Name=Os03t0791500-01;Locus_id=Os03g0791500;Note=Similar to 25.3 kDa vesicle transport protein.;Transcript_evidence=AK243541 (DDBJ%2C Best hit);ORF_evidence=B6TMY9 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: integral to membrane (GO:0016021);InterPro=Synaptobrevin (IPR001388),Longin (IPR010908),Longin-like (IPR011012);NIAS_FLcDNA=J100078I24;TENOR=Os03t0791500-01;KEGG=Os03t0791500-01
Chr03	irgsp1_rep	five_prime_UTR	32915031	32915158	.	-	.	Parent=Os03t0791500-01
Chr03	irgsp1_rep	five_prime_UTR	32913937	32913989	.	-	.	Parent=Os03t0791500-01
Chr03	irgsp1_rep	CDS	32913749	32913936	.	-	0	Parent=Os03t0791500-01
Chr03	irgsp1_rep	CDS	32912975	32913135	.	-	1	Parent=Os03t0791500-01
Chr03	irgsp1_rep	CDS	32912745	32912891	.	-	2	Parent=Os03t0791500-01
Chr03	irgsp1_rep	CDS	32912317	32912393	.	-	2	Parent=Os03t0791500-01
Chr03	irgsp1_rep	CDS	32911593	32911676	.	-	0	Parent=Os03t0791500-01
Chr03	irgsp1_rep	three_prime_UTR	32911242	32911592	.	-	.	Parent=Os03t0791500-01
Chr03	irgsp1_rep	mRNA	32925900	32930172	.	+	.	ID=Os03t0791700-01;Name=Os03t0791700-01;Locus_id=Os03g0791700;Note=Tyrosine protein kinase domain containing protein.;Transcript_evidence=AK071881 (DDBJ%2C Best hit),AK100700 (DDBJ%2C Best hit);ORF_evidence=Q7XBA0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J013045O17,J023114M22;Expression=AK071881;TENOR=Os03t0791700-01;KEGG=Os03t0791700-01
Chr03	irgsp1_rep	five_prime_UTR	32925900	32926009	.	+	.	Parent=Os03t0791700-01
Chr03	irgsp1_rep	five_prime_UTR	32926122	32926374	.	+	.	Parent=Os03t0791700-01
Chr03	irgsp1_rep	CDS	32926375	32927749	.	+	0	Parent=Os03t0791700-01
Chr03	irgsp1_rep	CDS	32927868	32928001	.	+	2	Parent=Os03t0791700-01
Chr03	irgsp1_rep	CDS	32928318	32928558	.	+	0	Parent=Os03t0791700-01
Chr03	irgsp1_rep	CDS	32928668	32928876	.	+	2	Parent=Os03t0791700-01
Chr03	irgsp1_rep	CDS	32928963	32928997	.	+	0	Parent=Os03t0791700-01
Chr03	irgsp1_rep	CDS	32929104	32929215	.	+	1	Parent=Os03t0791700-01
Chr03	irgsp1_rep	CDS	32929330	32929622	.	+	0	Parent=Os03t0791700-01
Chr03	irgsp1_rep	CDS	32929814	32929934	.	+	1	Parent=Os03t0791700-01
Chr03	irgsp1_rep	three_prime_UTR	32929935	32930172	.	+	.	Parent=Os03t0791700-01
Chr03	irgsp1_rep	mRNA	32927919	32930224	.	+	.	ID=Os03t0791700-02;Name=Os03t0791700-02;Locus_id=Os03g0791700;Note=Similar to Transmembrane protein kinase.;Transcript_evidence=AK103914 (DDBJ%2C Best hit);ORF_evidence=Q7XBA0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-012-G10;Expression=AK103914;TENOR=Os03t0791700-02;KEGG=Os03t0791700-02
Chr03	irgsp1_rep	five_prime_UTR	32927919	32927920	.	+	.	Parent=Os03t0791700-02
Chr03	irgsp1_rep	CDS	32927921	32928001	.	+	0	Parent=Os03t0791700-02
Chr03	irgsp1_rep	CDS	32928318	32928558	.	+	0	Parent=Os03t0791700-02
Chr03	irgsp1_rep	CDS	32928668	32928876	.	+	2	Parent=Os03t0791700-02
Chr03	irgsp1_rep	CDS	32928963	32928997	.	+	0	Parent=Os03t0791700-02
Chr03	irgsp1_rep	CDS	32929104	32929215	.	+	1	Parent=Os03t0791700-02
Chr03	irgsp1_rep	CDS	32929330	32929622	.	+	0	Parent=Os03t0791700-02
Chr03	irgsp1_rep	CDS	32929814	32929934	.	+	1	Parent=Os03t0791700-02
Chr03	irgsp1_rep	three_prime_UTR	32929935	32930224	.	+	.	Parent=Os03t0791700-02
Chr03	irgsp1_rep	mRNA	32929934	32930176	.	+	.	ID=Os03t0791700-03;Name=Os03t0791700-03;Locus_id=Os03g0791700;Note=Non-protein coding transcript.;Transcript_evidence=AK060551 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-022-A02;TENOR=Os03t0791700-03
Chr03	irgsp1_rep	exon	32929934	32930176	.	+	.	Parent=Os03t0791700-03
Chr03	irgsp1_rep	mRNA	32930349	32935490	.	-	.	ID=Os03t0791800-01;Name=Os03t0791800-01;Locus_id=Os03g0791800;Oryzabase Gene Symbol Synonym(s)=Rad6%2C OsRad6%2C Dhr6%2C OsUBC9%2C UBC9;Oryzabase Gene Name Synonym(s)=RAD6 DNA-repair homolog Dhr6%2C Ubiquitin-conjugating enzyme 9;Note=Rad6 (Ubiquitin carrier protein).;Transcript_evidence=AK120251 (DDBJ%2C Best hit),AK067703 (DDBJ%2C Best hit);ORF_evidence=A2XMS9 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135),Ubiquitin-conjugating enzyme%2C active site (IPR023313);NIAS_FLcDNA=J013045G10,J013116J09;Oryzabase=14528;Expression=AK120251;TENOR=Os03t0791800-01;KEGG=Os03t0791800-01 (EC:6.3.2.19)
Chr03	irgsp1_rep	five_prime_UTR	32935311	32935490	.	-	.	Parent=Os03t0791800-01
Chr03	irgsp1_rep	CDS	32935186	32935310	.	-	0	Parent=Os03t0791800-01
Chr03	irgsp1_rep	CDS	32934985	32935010	.	-	1	Parent=Os03t0791800-01
Chr03	irgsp1_rep	CDS	32931364	32931453	.	-	2	Parent=Os03t0791800-01
Chr03	irgsp1_rep	CDS	32931157	32931245	.	-	2	Parent=Os03t0791800-01
Chr03	irgsp1_rep	CDS	32930556	32930684	.	-	0	Parent=Os03t0791800-01
Chr03	irgsp1_rep	three_prime_UTR	32930349	32930555	.	-	.	Parent=Os03t0791800-01
Chr03	irgsp1_rep	mRNA	32930557	32935313	.	+	.	ID=Os03t0792050-00;Name=Os03t0792050-00;Locus_id=Os03g0792050;Note=Non-protein coding transcript.;Transcript_evidence=BT016345 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0792050-00
Chr03	irgsp1_rep	exon	32930557	32930684	.	+	.	Parent=Os03t0792050-00
Chr03	irgsp1_rep	exon	32931157	32931242	.	+	.	Parent=Os03t0792050-00
Chr03	irgsp1_rep	exon	32931360	32931457	.	+	.	Parent=Os03t0792050-00
Chr03	irgsp1_rep	exon	32935160	32935313	.	+	.	Parent=Os03t0792050-00
Chr03	irgsp1_rep	mRNA	32948240	32949399	.	-	.	ID=Os03t0792300-00;Name=Os03t0792300-00;Locus_id=Os03g0792300;Oryzabase Gene Symbol Synonym(s)=Os_F0746;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0032g15 (Wheat FLcDNA);ORF_evidence=Q10C75 (UniProt);Oryzabase=17509;TENOR=Os03t0792300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	32948506	32949399	.	-	0	Parent=Os03t0792300-00
Chr03	irgsp1_rep	three_prime_UTR	32948240	32948505	.	-	.	Parent=Os03t0792300-00
Chr03	irgsp1_rep	mRNA	32951544	32956773	.	+	.	ID=Os03t0792400-01;Name=Os03t0792400-01;Locus_id=Os03g0792400;Note=Similar to mRNA%2C clone: RTFL01-01-G24.;Transcript_evidence=AK064808 (DDBJ%2C Best hit);ORF_evidence=E4MVQ8 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: metalloendopeptidase activity (GO:0004222);InterPro=Peptidase M50 (IPR008915);NIAS_FLcDNA=J013000D19;TENOR=Os03t0792400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	32951544	32951788	.	+	.	Parent=Os03t0792400-01
Chr03	irgsp1_rep	five_prime_UTR	32951962	32951988	.	+	.	Parent=Os03t0792400-01
Chr03	irgsp1_rep	CDS	32951989	32952048	.	+	0	Parent=Os03t0792400-01
Chr03	irgsp1_rep	CDS	32952712	32953182	.	+	0	Parent=Os03t0792400-01
Chr03	irgsp1_rep	CDS	32953278	32953421	.	+	0	Parent=Os03t0792400-01
Chr03	irgsp1_rep	CDS	32953984	32954085	.	+	0	Parent=Os03t0792400-01
Chr03	irgsp1_rep	CDS	32954584	32954795	.	+	0	Parent=Os03t0792400-01
Chr03	irgsp1_rep	CDS	32955237	32955287	.	+	1	Parent=Os03t0792400-01
Chr03	irgsp1_rep	CDS	32955373	32955442	.	+	1	Parent=Os03t0792400-01
Chr03	irgsp1_rep	CDS	32955722	32955790	.	+	0	Parent=Os03t0792400-01
Chr03	irgsp1_rep	CDS	32956312	32956362	.	+	0	Parent=Os03t0792400-01
Chr03	irgsp1_rep	CDS	32956452	32956610	.	+	0	Parent=Os03t0792400-01
Chr03	irgsp1_rep	three_prime_UTR	32956611	32956773	.	+	.	Parent=Os03t0792400-01
Chr03	irgsp1_rep	mRNA	32956448	32956886	.	+	.	ID=Os03t0792400-02;Name=Os03t0792400-02;Locus_id=Os03g0792400;Note=Similar to predicted protein.;Transcript_evidence=AK062004 (DDBJ%2C Best hit);ORF_evidence=NP_198372.1 (RefSeq);NIAS_FLcDNA=001-043-D08;Expression=AK062004;TENOR=Os03t0792400-02;KEGG=Os03t0792400-02
Chr03	irgsp1_rep	five_prime_UTR	32956448	32956448	.	+	.	Parent=Os03t0792400-02
Chr03	irgsp1_rep	CDS	32956449	32956610	.	+	0	Parent=Os03t0792400-02
Chr03	irgsp1_rep	three_prime_UTR	32956611	32956886	.	+	.	Parent=Os03t0792400-02
Chr03	irgsp1_rep	mRNA	32957909	32964338	.	+	.	ID=Os03t0792500-01;Name=Os03t0792500-01;Locus_id=Os03g0792500;Oryzabase Gene Symbol Synonym(s)=OsMB5%2C MB5%2C OsMB5a%2C OsMB5b;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 5%2C MDC protein with a BTB domain 5%2C MDC protein having BTB domain 5;Note=Similar to Zinc finger POZ domain protein (Fragment).;Transcript_evidence=AK100829 (DDBJ%2C Best hit);ORF_evidence=Q84VC1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);NIAS_FLcDNA=J023123B19;Oryzabase=21199;Expression=AK100829;TENOR=Os03t0792500-01;KEGG=Os03t0792500-01
Chr03	irgsp1_rep	five_prime_UTR	32957909	32958022	.	+	.	Parent=Os03t0792500-01
Chr03	irgsp1_rep	CDS	32958023	32958483	.	+	0	Parent=Os03t0792500-01
Chr03	irgsp1_rep	CDS	32961312	32961687	.	+	1	Parent=Os03t0792500-01
Chr03	irgsp1_rep	CDS	32961781	32962054	.	+	0	Parent=Os03t0792500-01
Chr03	irgsp1_rep	CDS	32964019	32964203	.	+	2	Parent=Os03t0792500-01
Chr03	irgsp1_rep	three_prime_UTR	32964204	32964338	.	+	.	Parent=Os03t0792500-01
Chr03	irgsp1_rep	mRNA	32957958	32964489	.	+	.	ID=Os03t0792500-02;Name=Os03t0792500-02;Locus_id=Os03g0792500;Oryzabase Gene Symbol Synonym(s)=OsMB5%2C MB5%2C OsMB5a%2C OsMB5b;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 5%2C MDC protein with a BTB domain 5%2C MDC protein having BTB domain 5;Note=Similar to Zinc finger POZ domain protein (Fragment).;Transcript_evidence=AK068848 (DDBJ%2C Best hit);ORF_evidence=B6TJ67 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);NIAS_FLcDNA=J013164G10;Oryzabase=21199;Expression=AK068848;TENOR=Os03t0792500-02;KEGG=Os03t0792500-02
Chr03	irgsp1_rep	five_prime_UTR	32957958	32958022	.	+	.	Parent=Os03t0792500-02
Chr03	irgsp1_rep	CDS	32958023	32958483	.	+	0	Parent=Os03t0792500-02
Chr03	irgsp1_rep	CDS	32961312	32961687	.	+	1	Parent=Os03t0792500-02
Chr03	irgsp1_rep	CDS	32961781	32962054	.	+	0	Parent=Os03t0792500-02
Chr03	irgsp1_rep	CDS	32964019	32964203	.	+	2	Parent=Os03t0792500-02
Chr03	irgsp1_rep	three_prime_UTR	32964204	32964489	.	+	.	Parent=Os03t0792500-02
Chr03	irgsp1_rep	mRNA	32961316	32964555	.	+	.	ID=Os03t0792500-03;Name=Os03t0792500-03;Locus_id=Os03g0792500;Oryzabase Gene Symbol Synonym(s)=OsMB5%2C MB5%2C OsMB5a%2C OsMB5b;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 5%2C MDC protein with a BTB domain 5%2C MDC protein having BTB domain 5;Note=Similar to Zinc finger POZ domain protein (Fragment).;Transcript_evidence=AK058879 (DDBJ%2C Best hit);ORF_evidence=Q84VC1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069);NIAS_FLcDNA=001-007-A05;Oryzabase=21199;TENOR=Os03t0792500-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	32961316	32961414	.	+	.	Parent=Os03t0792500-03
Chr03	irgsp1_rep	CDS	32961415	32961687	.	+	0	Parent=Os03t0792500-03
Chr03	irgsp1_rep	CDS	32961781	32962054	.	+	0	Parent=Os03t0792500-03
Chr03	irgsp1_rep	CDS	32964019	32964203	.	+	2	Parent=Os03t0792500-03
Chr03	irgsp1_rep	three_prime_UTR	32964204	32964555	.	+	.	Parent=Os03t0792500-03
Chr03	irgsp1_rep	mRNA	32964680	32967777	.	-	.	ID=Os03t0792600-01;Name=Os03t0792600-01;Locus_id=Os03g0792600;CGSNL Gene Symbol=RFC5;CGSNL Gene Name=REPLICATION FACTOR C SUBUNIT 5;Oryzabase Gene Symbol Synonym(s)=OsRFC5;Oryzabase Gene Name Synonym(s)=replication factor C subunit 5%2C replication factor C5;Note=ATPase%2C AAA+ type%2C core domain containing protein.;Transcript_evidence=AK103751 (DDBJ%2C Best hit);ORF_evidence=Q84N07 (UniProt);GO=Biological Process: DNA replication (GO:0006260),Cellular Component: nucleus (GO:0005634),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),DNA polymerase III%2C clamp loader complex%2C gamma/delta/delta subunit%2C C-terminal (IPR008921),DNA polymerase III%2C clamp-loader complex%2C subunit E%2C C-terminal (IPR019483);NIAS_FLcDNA=J033142O15;Oryzabase=21296;TENOR=Os03t0792600-01
Chr03	irgsp1_rep	five_prime_UTR	32967682	32967777	.	-	.	Parent=Os03t0792600-01
Chr03	irgsp1_rep	CDS	32967598	32967681	.	-	0	Parent=Os03t0792600-01
Chr03	irgsp1_rep	CDS	32967372	32967482	.	-	0	Parent=Os03t0792600-01
Chr03	irgsp1_rep	CDS	32967238	32967270	.	-	0	Parent=Os03t0792600-01
Chr03	irgsp1_rep	CDS	32966728	32966896	.	-	0	Parent=Os03t0792600-01
Chr03	irgsp1_rep	CDS	32966454	32966635	.	-	2	Parent=Os03t0792600-01
Chr03	irgsp1_rep	CDS	32965919	32966055	.	-	0	Parent=Os03t0792600-01
Chr03	irgsp1_rep	CDS	32965702	32965800	.	-	1	Parent=Os03t0792600-01
Chr03	irgsp1_rep	CDS	32965459	32965528	.	-	1	Parent=Os03t0792600-01
Chr03	irgsp1_rep	CDS	32965300	32965374	.	-	0	Parent=Os03t0792600-01
Chr03	irgsp1_rep	CDS	32965014	32965059	.	-	0	Parent=Os03t0792600-01
Chr03	irgsp1_rep	CDS	32964845	32964903	.	-	2	Parent=Os03t0792600-01
Chr03	irgsp1_rep	three_prime_UTR	32964680	32964844	.	-	.	Parent=Os03t0792600-01
Chr03	irgsp1_rep	mRNA	32964683	32967711	.	-	.	ID=Os03t0792600-02;Name=Os03t0792600-02;Locus_id=Os03g0792600;CGSNL Gene Symbol=RFC5;CGSNL Gene Name=REPLICATION FACTOR C SUBUNIT 5;Oryzabase Gene Symbol Synonym(s)=OsRFC5;Oryzabase Gene Name Synonym(s)=replication factor C subunit 5%2C replication factor C5;Note=ATPase%2C AAA+ type%2C core domain containing protein.;Transcript_evidence=AK059559 (DDBJ%2C Best hit);ORF_evidence=Q84N07 (UniProt);GO=Biological Process: DNA replication (GO:0006260),Cellular Component: nucleus (GO:0005634),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),DNA polymerase III%2C clamp loader complex%2C gamma/delta/delta subunit%2C C-terminal (IPR008921),DNA polymerase III%2C clamp-loader complex%2C subunit E%2C C-terminal (IPR019483);NIAS_FLcDNA=001-029-G11;Oryzabase=21296;TENOR=Os03t0792600-02
Chr03	irgsp1_rep	five_prime_UTR	32967682	32967711	.	-	.	Parent=Os03t0792600-02
Chr03	irgsp1_rep	CDS	32967598	32967681	.	-	0	Parent=Os03t0792600-02
Chr03	irgsp1_rep	CDS	32967372	32967482	.	-	0	Parent=Os03t0792600-02
Chr03	irgsp1_rep	CDS	32967238	32967270	.	-	0	Parent=Os03t0792600-02
Chr03	irgsp1_rep	CDS	32966728	32966896	.	-	0	Parent=Os03t0792600-02
Chr03	irgsp1_rep	CDS	32966454	32966635	.	-	2	Parent=Os03t0792600-02
Chr03	irgsp1_rep	CDS	32965919	32966055	.	-	0	Parent=Os03t0792600-02
Chr03	irgsp1_rep	CDS	32965702	32965800	.	-	1	Parent=Os03t0792600-02
Chr03	irgsp1_rep	CDS	32965459	32965528	.	-	1	Parent=Os03t0792600-02
Chr03	irgsp1_rep	CDS	32965300	32965374	.	-	0	Parent=Os03t0792600-02
Chr03	irgsp1_rep	CDS	32965014	32965059	.	-	0	Parent=Os03t0792600-02
Chr03	irgsp1_rep	CDS	32964845	32964903	.	-	2	Parent=Os03t0792600-02
Chr03	irgsp1_rep	three_prime_UTR	32964683	32964844	.	-	.	Parent=Os03t0792600-02
Chr03	irgsp1_rep	mRNA	32971331	32973196	.	+	.	ID=Os03t0792800-01;Name=Os03t0792800-01;Locus_id=Os03g0792800;Note=Beta-1%2C3-glucanase-like protein.;Transcript_evidence=AK242876 (DDBJ%2C Best hit);ORF_evidence=B6SXV6 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J090078D21;TENOR=Os03t0792800-01;KEGG=Os03t0792800-01
Chr03	irgsp1_rep	five_prime_UTR	32971331	32971500	.	+	.	Parent=Os03t0792800-01
Chr03	irgsp1_rep	CDS	32971501	32971862	.	+	0	Parent=Os03t0792800-01
Chr03	irgsp1_rep	CDS	32971953	32973066	.	+	1	Parent=Os03t0792800-01
Chr03	irgsp1_rep	three_prime_UTR	32973067	32973196	.	+	.	Parent=Os03t0792800-01
Chr03	irgsp1_rep	mRNA	32971897	32972962	.	-	.	ID=Os03t0792850-00;Name=Os03t0792850-00;Locus_id=Os03g0792850;Note=Conserved hypothetical protein.;Transcript_evidence=BT019195 (DDBJ);ORF_evidence=C0P5S7 (UniProt);TENOR=Os03t0792850-00
Chr03	irgsp1_rep	five_prime_UTR	32972818	32972962	.	-	.	Parent=Os03t0792850-00
Chr03	irgsp1_rep	CDS	32971897	32972817	.	-	0	Parent=Os03t0792850-00
Chr03	irgsp1_rep	mRNA	32974324	32976911	.	-	.	ID=Os03t0792900-01;Name=Os03t0792900-01;Locus_id=Os03g0792900;CGSNL Gene Symbol=SAP6;CGSNL Gene Name=STRESS ASSOCIATED PROTEIN GENE 6;Oryzabase Gene Symbol Synonym(s)=OsSAP6;Oryzabase Gene Name Synonym(s)=stress-associated protein 6;Note=Similar to PVPR3 protein.;Transcript_evidence=AK102503 (DDBJ%2C Best hit);ORF_evidence=Q852K5 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C AN1-type (IPR000058),Zinc finger%2C A20-type (IPR002653);NIAS_FLcDNA=J033095D08;Oryzabase=18184;Expression=AK102503;TENOR=Os03t0792900-01;KEGG=Os03t0792900-01
Chr03	irgsp1_rep	five_prime_UTR	32976702	32976911	.	-	.	Parent=Os03t0792900-01
Chr03	irgsp1_rep	five_prime_UTR	32975251	32975271	.	-	.	Parent=Os03t0792900-01
Chr03	irgsp1_rep	CDS	32974768	32975250	.	-	0	Parent=Os03t0792900-01
Chr03	irgsp1_rep	three_prime_UTR	32974324	32974767	.	-	.	Parent=Os03t0792900-01
Chr03	irgsp1_rep	mRNA	32982204	32982969	.	-	.	ID=Os03t0793000-01;Name=Os03t0793000-01;Locus_id=Os03g0793000;RAP-DB Gene Symbol Synonym(s)=OsSAP7%2C OsiSAP7;RAP-DB Gene Name Synonym(s)=Stress associated protein 7;CGSNL Gene Symbol=SAP7;CGSNL Gene Name=STRESS ASSOCIATED PROTEIN GENE 7;Oryzabase Gene Symbol Synonym(s)=OsSAP7%2C OsiSAP7;Oryzabase Gene Name Synonym(s)=stress-associated protein 7%2C Stress associated protein 7;Note=A20/AN1 zinc-finger protein%2C Stress associated protein%2C Negative regulation of ABA and water-deficit stress signalling;Transcript_evidence=AK108205;ORF_evidence=Q852K6;GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=AN1-like Zinc finger (IPR035896),Zinc finger%2C A20-type (IPR002653),Zinc finger%2C AN1-type (IPR000058);NIAS_FLcDNA=002-140-D04;Manual Curation=June 1%2C 2020;Literature_PMID=26089154,17033811;Oryzabase=18185;Expression=AK108205;TENOR=Os03t0793000-01;KEGG=Os03t0793000-01;Subcellular location=nucleus (GO:0005634)
Chr03	irgsp1_rep	five_prime_UTR	32982903	32982969	.	-	.	Parent=Os03t0793000-01
Chr03	irgsp1_rep	CDS	32982393	32982902	.	-	0	Parent=Os03t0793000-01
Chr03	irgsp1_rep	three_prime_UTR	32982204	32982392	.	-	.	Parent=Os03t0793000-01
Chr03	irgsp1_rep	mRNA	32984516	32986151	.	-	.	ID=Os03t0793100-01;Name=Os03t0793100-01;Locus_id=Os03g0793100;Note=Glycosyl transferase%2C family 43 protein.;Transcript_evidence=AK067897 (DDBJ%2C Best hit);ORF_evidence=Q7XHJ7 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity (GO:0015018);InterPro=Glycosyl transferase%2C family 43 (IPR005027);NIAS_FLcDNA=J013123L13;Expression=AK067897;TENOR=Os03t0793100-01;KEGG=Os03t0793100-01
Chr03	irgsp1_rep	five_prime_UTR	32985892	32986151	.	-	.	Parent=Os03t0793100-01
Chr03	irgsp1_rep	CDS	32985461	32985891	.	-	0	Parent=Os03t0793100-01
Chr03	irgsp1_rep	CDS	32984807	32985182	.	-	1	Parent=Os03t0793100-01
Chr03	irgsp1_rep	three_prime_UTR	32984516	32984806	.	-	.	Parent=Os03t0793100-01
Chr03	irgsp1_rep	mRNA	32987044	32988118	.	-	.	ID=Os03t0793300-01;Name=Os03t0793300-01;Locus_id=Os03g0793300;CGSNL Gene Symbol=SAP14;CGSNL Gene Name=STRESS ASSOCIATED PROTEIN GENE 14;Oryzabase Gene Symbol Synonym(s)=OsSAP14;Oryzabase Gene Name Synonym(s)=stress-associated protein 14;Note=Similar to Expressed protein (Zinc finger-like protein).;Transcript_evidence=AK108384 (DDBJ%2C Best hit);ORF_evidence=Q852K8 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C AN1-type (IPR000058);NIAS_FLcDNA=002-142-E10;Oryzabase=18189;Expression=AK108384;TENOR=Os03t0793300-01;KEGG=Os03t0793300-01
Chr03	irgsp1_rep	five_prime_UTR	32988023	32988118	.	-	.	Parent=Os03t0793300-01
Chr03	irgsp1_rep	CDS	32987309	32988022	.	-	0	Parent=Os03t0793300-01
Chr03	irgsp1_rep	three_prime_UTR	32987044	32987308	.	-	.	Parent=Os03t0793300-01
Chr03	irgsp1_rep	mRNA	32994431	32996265	.	+	.	ID=Os03t0793450-00;Name=Os03t0793450-00;Locus_id=Os03g0793450;Note=Hypothetical gene.;Transcript_evidence=AK242952 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;TENOR=Os03t0793450-00;KEGG=Os03t0793450-00
Chr03	irgsp1_rep	five_prime_UTR	32994431	32994635	.	+	.	Parent=Os03t0793450-00
Chr03	irgsp1_rep	CDS	32994636	32994696	.	+	0	Parent=Os03t0793450-00
Chr03	irgsp1_rep	CDS	32994792	32994857	.	+	2	Parent=Os03t0793450-00
Chr03	irgsp1_rep	CDS	32994955	32995040	.	+	2	Parent=Os03t0793450-00
Chr03	irgsp1_rep	three_prime_UTR	32995041	32995464	.	+	.	Parent=Os03t0793450-00
Chr03	irgsp1_rep	three_prime_UTR	32995589	32995646	.	+	.	Parent=Os03t0793450-00
Chr03	irgsp1_rep	three_prime_UTR	32996009	32996265	.	+	.	Parent=Os03t0793450-00
Chr03	irgsp1_rep	mRNA	32999502	33006898	.	+	.	ID=Os03t0793500-01;Name=Os03t0793500-01;Locus_id=Os03g0793500;RAP-DB Gene Symbol Synonym(s)=HD16%2C Hd16%2C EL1%2C CK1;RAP-DB Gene Name Synonym(s)=HEADING DATE 16%2C EARLY FLOWERING 1%2C Early flowering1%2C Casein Kinase I;CGSNL Gene Symbol=HD16;CGSNL Gene Name=HEADING DATE 16;Oryzabase Gene Symbol Synonym(s)=Hd16%2C EL1%2C CK1%2C Hd16/CKI%2C Hd16/EL1;Oryzabase Gene Name Synonym(s)=EARLY FLOWERING 1%2C Early flowering1%2C Casein Kinase I;Note=Casein kinase I%2C Photoperiodic control of flowering time%2C Long-day repression;Transcript_evidence=AK121620;ORF_evidence=Q852L0;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J033044P16;Manual Curation=November 21%2C 2013;Literature_PMID=23789941,20400938;Oryzabase=8704;TENOR=Os03t0793500-01;KEGG=Os03t0793500-01
Chr03	irgsp1_rep	five_prime_UTR	32999502	32999688	.	+	.	Parent=Os03t0793500-01
Chr03	irgsp1_rep	five_prime_UTR	33000382	33000434	.	+	.	Parent=Os03t0793500-01
Chr03	irgsp1_rep	CDS	33000435	33000848	.	+	0	Parent=Os03t0793500-01
Chr03	irgsp1_rep	CDS	33001510	33001635	.	+	0	Parent=Os03t0793500-01
Chr03	irgsp1_rep	CDS	33001719	33001792	.	+	0	Parent=Os03t0793500-01
Chr03	irgsp1_rep	CDS	33001882	33001951	.	+	1	Parent=Os03t0793500-01
Chr03	irgsp1_rep	CDS	33002036	33002091	.	+	0	Parent=Os03t0793500-01
Chr03	irgsp1_rep	CDS	33002176	33002247	.	+	1	Parent=Os03t0793500-01
Chr03	irgsp1_rep	CDS	33002359	33002453	.	+	1	Parent=Os03t0793500-01
Chr03	irgsp1_rep	CDS	33002610	33002676	.	+	2	Parent=Os03t0793500-01
Chr03	irgsp1_rep	CDS	33002773	33002902	.	+	1	Parent=Os03t0793500-01
Chr03	irgsp1_rep	CDS	33002992	33003207	.	+	0	Parent=Os03t0793500-01
Chr03	irgsp1_rep	CDS	33003301	33003431	.	+	0	Parent=Os03t0793500-01
Chr03	irgsp1_rep	CDS	33004133	33004307	.	+	1	Parent=Os03t0793500-01
Chr03	irgsp1_rep	CDS	33004391	33004481	.	+	0	Parent=Os03t0793500-01
Chr03	irgsp1_rep	CDS	33005565	33005722	.	+	2	Parent=Os03t0793500-01
Chr03	irgsp1_rep	CDS	33006177	33006365	.	+	0	Parent=Os03t0793500-01
Chr03	irgsp1_rep	CDS	33006480	33006539	.	+	0	Parent=Os03t0793500-01
Chr03	irgsp1_rep	three_prime_UTR	33006540	33006898	.	+	.	Parent=Os03t0793500-01
Chr03	irgsp1_rep	mRNA	32999556	33006651	.	+	.	ID=Os03t0793500-02;Name=Os03t0793500-02;Locus_id=Os03g0793500;CGSNL Gene Symbol=HD16;CGSNL Gene Name=HEADING DATE 16;Oryzabase Gene Symbol Synonym(s)=Hd16%2C EL1%2C CK1%2C Hd16/CKI%2C Hd16/EL1;Oryzabase Gene Name Synonym(s)=EARLY FLOWERING 1%2C Early flowering1%2C Casein Kinase I;Note=Similar to Casein kinase-like protein.;Transcript_evidence=AK103407 (DDBJ%2C Best hit);ORF_evidence=B6U8U2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033128D14;Oryzabase=8704;TENOR=Os03t0793500-02;KEGG=Os03t0793500-02
Chr03	irgsp1_rep	five_prime_UTR	32999556	32999688	.	+	.	Parent=Os03t0793500-02
Chr03	irgsp1_rep	five_prime_UTR	33000382	33000434	.	+	.	Parent=Os03t0793500-02
Chr03	irgsp1_rep	CDS	33000435	33000848	.	+	0	Parent=Os03t0793500-02
Chr03	irgsp1_rep	CDS	33001510	33001635	.	+	0	Parent=Os03t0793500-02
Chr03	irgsp1_rep	CDS	33001719	33001792	.	+	0	Parent=Os03t0793500-02
Chr03	irgsp1_rep	CDS	33001882	33001951	.	+	1	Parent=Os03t0793500-02
Chr03	irgsp1_rep	CDS	33002036	33002091	.	+	0	Parent=Os03t0793500-02
Chr03	irgsp1_rep	CDS	33002176	33002247	.	+	1	Parent=Os03t0793500-02
Chr03	irgsp1_rep	CDS	33002359	33002453	.	+	1	Parent=Os03t0793500-02
Chr03	irgsp1_rep	CDS	33002610	33002676	.	+	2	Parent=Os03t0793500-02
Chr03	irgsp1_rep	CDS	33002773	33002902	.	+	1	Parent=Os03t0793500-02
Chr03	irgsp1_rep	CDS	33002992	33003207	.	+	0	Parent=Os03t0793500-02
Chr03	irgsp1_rep	CDS	33003301	33003431	.	+	0	Parent=Os03t0793500-02
Chr03	irgsp1_rep	CDS	33004133	33004307	.	+	1	Parent=Os03t0793500-02
Chr03	irgsp1_rep	CDS	33004391	33004481	.	+	0	Parent=Os03t0793500-02
Chr03	irgsp1_rep	CDS	33005565	33005722	.	+	2	Parent=Os03t0793500-02
Chr03	irgsp1_rep	CDS	33006177	33006365	.	+	0	Parent=Os03t0793500-02
Chr03	irgsp1_rep	CDS	33006480	33006539	.	+	0	Parent=Os03t0793500-02
Chr03	irgsp1_rep	three_prime_UTR	33006540	33006651	.	+	.	Parent=Os03t0793500-02
Chr03	irgsp1_rep	mRNA	33001509	33004482	.	-	.	ID=Os03t0793550-00;Name=Os03t0793550-00;Locus_id=Os03g0793550;Note=Hypothetical protein.;Transcript_evidence=BT084747 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0793550-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	33004366	33004482	.	-	.	Parent=Os03t0793550-00
Chr03	irgsp1_rep	five_prime_UTR	33004140	33004283	.	-	.	Parent=Os03t0793550-00
Chr03	irgsp1_rep	five_prime_UTR	33003314	33003439	.	-	.	Parent=Os03t0793550-00
Chr03	irgsp1_rep	five_prime_UTR	33003105	33003231	.	-	.	Parent=Os03t0793550-00
Chr03	irgsp1_rep	CDS	33003001	33003104	.	-	0	Parent=Os03t0793550-00
Chr03	irgsp1_rep	CDS	33002790	33002907	.	-	1	Parent=Os03t0793550-00
Chr03	irgsp1_rep	three_prime_UTR	33002764	33002789	.	-	.	Parent=Os03t0793550-00
Chr03	irgsp1_rep	three_prime_UTR	33002382	33002515	.	-	.	Parent=Os03t0793550-00
Chr03	irgsp1_rep	three_prime_UTR	33002174	33002270	.	-	.	Parent=Os03t0793550-00
Chr03	irgsp1_rep	three_prime_UTR	33001666	33001917	.	-	.	Parent=Os03t0793550-00
Chr03	irgsp1_rep	three_prime_UTR	33001509	33001597	.	-	.	Parent=Os03t0793550-00
Chr03	irgsp1_rep	mRNA	33010944	33014444	.	+	.	ID=Os03t0793600-00;Name=Os03t0793600-00;Locus_id=Os03g0793600;Note=Similar to type I inositol-1%2C4%2C5-trisphosphate 5-phosphatase CVP2.;Transcript_evidence=BT085886 (DDBJ);ORF_evidence=NP_001151627.1 (RefSeq);GO=Molecular Function: inositol or phosphatidylinositol phosphatase activity (GO:0004437);InterPro=Inositol polyphosphate-related phosphatase (IPR000300),Endonuclease/exonuclease/phosphatase (IPR005135);TENOR=Os03t0793600-00;KEGG=Os03t0793600-00 (EC:3.1.3.36)
Chr03	irgsp1_rep	five_prime_UTR	33010944	33010954	.	+	.	Parent=Os03t0793600-00
Chr03	irgsp1_rep	CDS	33010955	33010984	.	+	0	Parent=Os03t0793600-00
Chr03	irgsp1_rep	CDS	33011096	33011183	.	+	0	Parent=Os03t0793600-00
Chr03	irgsp1_rep	CDS	33011798	33011875	.	+	2	Parent=Os03t0793600-00
Chr03	irgsp1_rep	CDS	33012092	33012179	.	+	2	Parent=Os03t0793600-00
Chr03	irgsp1_rep	CDS	33012332	33012436	.	+	1	Parent=Os03t0793600-00
Chr03	irgsp1_rep	CDS	33012531	33013031	.	+	1	Parent=Os03t0793600-00
Chr03	irgsp1_rep	CDS	33013163	33013298	.	+	1	Parent=Os03t0793600-00
Chr03	irgsp1_rep	CDS	33013437	33013630	.	+	0	Parent=Os03t0793600-00
Chr03	irgsp1_rep	CDS	33013720	33013828	.	+	1	Parent=Os03t0793600-00
Chr03	irgsp1_rep	CDS	33013931	33014079	.	+	0	Parent=Os03t0793600-00
Chr03	irgsp1_rep	CDS	33014177	33014396	.	+	1	Parent=Os03t0793600-00
Chr03	irgsp1_rep	three_prime_UTR	33014397	33014444	.	+	.	Parent=Os03t0793600-00
Chr03	irgsp1_rep	mRNA	33020035	33022850	.	+	.	ID=Os03t0793700-01;Name=Os03t0793700-01;Locus_id=Os03g0793700;Oryzabase Gene Symbol Synonym(s)=OsEnS-57%2C EnS-57%2C CDP3.1;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 57%2C cupin domain containing protein 3.1%2C Cupincin;Note=RmlC-like jelly roll fold domain containing protein.;Transcript_evidence=AK121667 (DDBJ%2C Best hit);ORF_evidence=Q8L8I0 (UniProt);GO=Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710);NIAS_FLcDNA=J033066K06;Oryzabase=18381;Expression=AK121667;TENOR=Os03t0793700-01;KEGG=Os03t0793700-01
Chr03	irgsp1_rep	five_prime_UTR	33020035	33020068	.	+	.	Parent=Os03t0793700-01
Chr03	irgsp1_rep	CDS	33020069	33020611	.	+	0	Parent=Os03t0793700-01
Chr03	irgsp1_rep	CDS	33021532	33021612	.	+	0	Parent=Os03t0793700-01
Chr03	irgsp1_rep	CDS	33021707	33021982	.	+	0	Parent=Os03t0793700-01
Chr03	irgsp1_rep	CDS	33022084	33022596	.	+	0	Parent=Os03t0793700-01
Chr03	irgsp1_rep	three_prime_UTR	33022597	33022850	.	+	.	Parent=Os03t0793700-01
Chr03	irgsp1_rep	mRNA	33023016	33023942	.	-	.	ID=Os03t0793800-01;Name=Os03t0793800-01;Locus_id=Os03g0793800;Oryzabase Gene Symbol Synonym(s)=OsLTPG7%2C OsLTPg7;Oryzabase Gene Name Synonym(s)=GPI-anchored non-specific lipid transfer protein 7%2C type G nsLTP 7%2C type G non-specific lipid transfer protein 7;Note=Plant lipid transfer protein and hydrophobic protein%2C helical domain containing protein.;Transcript_evidence=AK058812 (DDBJ%2C Best hit);ORF_evidence=B6UDW9 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=001-003-E04;Oryzabase=13493;Expression=AK058812;TENOR=Os03t0793800-01;KEGG=Os03t0793800-01
Chr03	irgsp1_rep	five_prime_UTR	33023851	33023942	.	-	.	Parent=Os03t0793800-01
Chr03	irgsp1_rep	CDS	33023514	33023850	.	-	0	Parent=Os03t0793800-01
Chr03	irgsp1_rep	CDS	33023215	33023411	.	-	2	Parent=Os03t0793800-01
Chr03	irgsp1_rep	three_prime_UTR	33023016	33023214	.	-	.	Parent=Os03t0793800-01
Chr03	irgsp1_rep	mRNA	33026084	33027418	.	-	.	ID=Os03t0793900-00;Name=Os03t0793900-00;Locus_id=Os03g0793900;Oryzabase Gene Symbol Synonym(s)=OsLTPG8%2C OsLTPg8;Oryzabase Gene Name Synonym(s)=GPI-anchored non-specific lipid transfer protein 8%2C type G nsLTP 8%2C type G non-specific lipid transfer protein 8;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0062h13 (Wheat FLcDNA);ORF_evidence=Q852L4 (UniProt);Oryzabase=13494;TENOR=Os03t0793900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	33027038	33027418	.	-	0	Parent=Os03t0793900-00
Chr03	irgsp1_rep	CDS	33026358	33026430	.	-	0	Parent=Os03t0793900-00
Chr03	irgsp1_rep	CDS	33026087	33026274	.	-	2	Parent=Os03t0793900-00
Chr03	irgsp1_rep	three_prime_UTR	33026084	33026086	.	-	.	Parent=Os03t0793900-00
Chr03	irgsp1_rep	mRNA	33027987	33028460	.	-	.	ID=Os03t0793950-00;Name=Os03t0793950-00;Locus_id=Os03g0793950;Note=Similar to Non-specific lipid-transfer protein.;Transcript_evidence=EU948204 (DDBJ);ORF_evidence=A3ANJ9 (UniProt);TENOR=Os03t0793950-00
Chr03	irgsp1_rep	CDS	33027987	33028460	.	-	0	Parent=Os03t0793950-00
Chr03	irgsp1_rep	mRNA	33028009	33029105	.	+	.	ID=Os03t0794000-01;Name=Os03t0794000-01;Locus_id=Os03g0794000;Oryzabase Gene Symbol Synonym(s)=OsLTPG9%2C OsLTPg9;Oryzabase Gene Name Synonym(s)=GPI-anchored non-specific lipid transfer protein 9%2C type G nsLTP 9%2C type G non-specific lipid transfer protein 9;Note=Plant lipid transfer protein/Par allergen family protein.;Transcript_evidence=AK108123 (DDBJ%2C Best hit);ORF_evidence=A3ANJ9 (UniProt);GO=Biological Process: lipid transport (GO:0006869),Molecular Function: lipid binding (GO:0008289);InterPro=Plant lipid transfer protein/Par allergen (IPR000528),Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=002-139-D02;Oryzabase=13495;Expression=AK108123;TENOR=Os03t0794000-01;KEGG=Os03t0794000-01
Chr03	irgsp1_rep	five_prime_UTR	33028009	33028034	.	+	.	Parent=Os03t0794000-01
Chr03	irgsp1_rep	CDS	33028035	33028410	.	+	0	Parent=Os03t0794000-01
Chr03	irgsp1_rep	CDS	33028833	33029026	.	+	2	Parent=Os03t0794000-01
Chr03	irgsp1_rep	three_prime_UTR	33029027	33029105	.	+	.	Parent=Os03t0794000-01
Chr03	irgsp1_rep	mRNA	33034615	33035286	.	+	.	ID=Os03t0794200-00;Name=Os03t0794200-00;Locus_id=Os03g0794200;Note=Similar to N-acetyltransferase.;Transcript_evidence=AK361653 (DDBJ);ORF_evidence=NP_001150788.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: N-acetyltransferase activity (GO:0008080);InterPro=GCN5-related N-acetyltransferase (GNAT) domain (IPR000182),Acyl-CoA N-acyltransferase (IPR016181);TENOR=Os03t0794200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	33034615	33035277	.	+	0	Parent=Os03t0794200-00
Chr03	irgsp1_rep	three_prime_UTR	33035278	33035286	.	+	.	Parent=Os03t0794200-00
Chr03	irgsp1_rep	mRNA	33036319	33036951	.	+	.	ID=Os03t0794300-00;Name=Os03t0794300-00;Locus_id=Os03g0794300;Note=Acyl-CoA N-acyltransferase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001150788.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: N-acetyltransferase activity (GO:0008080);InterPro=GCN5-related N-acetyltransferase (GNAT) domain (IPR000182),Acyl-CoA N-acyltransferase (IPR016181);TENOR=Os03t0794300-00;KEGG=Os03t0794300-00
Chr03	irgsp1_rep	CDS	33036319	33036951	.	+	0	Parent=Os03t0794300-00
Chr03	irgsp1_rep	mRNA	33037416	33037983	.	+	.	ID=Os03t0794400-00;Name=Os03t0794400-00;Locus_id=Os03g0794400;Note=Similar to N-acetyltransferase.;Transcript_evidence=AK361653 (DDBJ);ORF_evidence=NP_001150788.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: N-acetyltransferase activity (GO:0008080);InterPro=GCN5-related N-acetyltransferase (GNAT) domain (IPR000182),Acyl-CoA N-acyltransferase (IPR016181);TENOR=Os03t0794400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	33037416	33037982	.	+	0	Parent=Os03t0794400-00
Chr03	irgsp1_rep	three_prime_UTR	33037983	33037983	.	+	.	Parent=Os03t0794400-00
Chr03	irgsp1_rep	mRNA	33038059	33041471	.	-	.	ID=Os03t0794500-01;Name=Os03t0794500-01;Locus_id=Os03g0794500;CGSNL Gene Symbol=GDH1;CGSNL Gene Name=GLUTAMATE DEHYDROGENASE 1;Oryzabase Gene Symbol Synonym(s)=OsGDH1;Oryzabase Gene Name Synonym(s)=glutamate dehydrogenase 1%2C glutamate dehydrogenase (NAD(P)+);Note=Similar to Glutamate dehydrogenase (EC 1.4.1.3) (GDH).;Transcript_evidence=AK071839 (DDBJ%2C Best hit);ORF_evidence=E9NX12 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-NH2 group of donors%2C NAD or NADP as acceptor (GO:0016639);InterPro=Glutamate/phenylalanine/leucine/valine dehydrogenase (IPR006095),Glutamate/phenylalanine/leucine/valine dehydrogenase%2C C-terminal (IPR006096),Glutamate/phenylalanine/leucine/valine dehydrogenase%2C dimerisation domain (IPR006097),Glutamate dehydrogenase (IPR014362),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023121E06;Oryzabase=9502;Expression=AK071839;TENOR=Os03t0794500-01;KEGG=Os03t0794500-01 (EC:1.4.1.3)
Chr03	irgsp1_rep	five_prime_UTR	33041366	33041471	.	-	.	Parent=Os03t0794500-01
Chr03	irgsp1_rep	five_prime_UTR	33041216	33041248	.	-	.	Parent=Os03t0794500-01
Chr03	irgsp1_rep	CDS	33041108	33041215	.	-	0	Parent=Os03t0794500-01
Chr03	irgsp1_rep	CDS	33040810	33040923	.	-	0	Parent=Os03t0794500-01
Chr03	irgsp1_rep	CDS	33040202	33040423	.	-	0	Parent=Os03t0794500-01
Chr03	irgsp1_rep	CDS	33040027	33040101	.	-	0	Parent=Os03t0794500-01
Chr03	irgsp1_rep	CDS	33039723	33039839	.	-	0	Parent=Os03t0794500-01
Chr03	irgsp1_rep	CDS	33039065	33039315	.	-	0	Parent=Os03t0794500-01
Chr03	irgsp1_rep	CDS	33038844	33038919	.	-	1	Parent=Os03t0794500-01
Chr03	irgsp1_rep	CDS	33038661	33038747	.	-	0	Parent=Os03t0794500-01
Chr03	irgsp1_rep	CDS	33038364	33038549	.	-	0	Parent=Os03t0794500-01
Chr03	irgsp1_rep	three_prime_UTR	33038059	33038363	.	-	.	Parent=Os03t0794500-01
Chr03	irgsp1_rep	mRNA	33045524	33047408	.	-	.	ID=Os03t0794700-01;Name=Os03t0794700-01;Locus_id=Os03g0794700;Oryzabase Gene Symbol Synonym(s)=RPS18%2C OsRPS18;Oryzabase Gene Name Synonym(s)=ribosomal protein S18%2C ribosomal protein small subunit 18;Note=Similar to 40S ribosomal protein S18.;Transcript_evidence=AK058881 (DDBJ%2C Best hit),AK059548 (DDBJ%2C Best hit);ORF_evidence=NP_001151612.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S13 (IPR001892),Ribosomal protein S13-like%2C H2TH (IPR010979),Ribosomal protein S13%2C conserved site (IPR018269);NIAS_FLcDNA=001-007-B06,001-029-F08;Oryzabase=22180;Expression=AK058881;TENOR=Os03t0794700-01;KEGG=Os03t0794700-01
Chr03	irgsp1_rep	five_prime_UTR	33047317	33047408	.	-	.	Parent=Os03t0794700-01
Chr03	irgsp1_rep	CDS	33047314	33047316	.	-	0	Parent=Os03t0794700-01
Chr03	irgsp1_rep	CDS	33047049	33047210	.	-	0	Parent=Os03t0794700-01
Chr03	irgsp1_rep	CDS	33046757	33046944	.	-	0	Parent=Os03t0794700-01
Chr03	irgsp1_rep	CDS	33045986	33046091	.	-	1	Parent=Os03t0794700-01
Chr03	irgsp1_rep	three_prime_UTR	33045524	33045985	.	-	.	Parent=Os03t0794700-01
Chr03	irgsp1_rep	mRNA	33049423	33060334	.	+	.	ID=Os03t0794800-01;Name=Os03t0794800-01;Locus_id=Os03g0794800;RAP-DB Gene Symbol Synonym(s)=Xrn4%2C OsXrn4;RAP-DB Gene Name Synonym(s)=5'-3' exoribonuclease 4;CGSNL Gene Symbol=XRN4;CGSNL Gene Name=5'-3' EXORIBONUCLEASE 4;Oryzabase Gene Symbol Synonym(s)=OsXrn4%2C Xrn4;Oryzabase Gene Name Synonym(s)=5'-3' exoribonuclease 4;Note=5'-3' exoribonuclease%2C Resistant to viral infection;Transcript_evidence=AK070933;ORF_evidence=Q6F378;GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: exonuclease activity (GO:0004527),Molecular Function: 5'-3' exoribonuclease activity (GO:0004534),Molecular Function: zinc ion binding (GO:0008270),Cellular Component: nucleus (GO:0005634);InterPro=Zinc finger%2C CCHC-type superfamily (IPR036875),5'-3' exoribonuclease type 2 (IPR017151),Putative 5-3 exonuclease (IPR004859),Zinc finger%2C CCHC-type (IPR001878),Xrn1%2C helical domain (IPR041412);NIAS_FLcDNA=J023064E05;Manual Curation=July 15%2C 2020;Literature_PMID=28987346;Oryzabase=22101;Expression=AK070933;TENOR=Os03t0794800-01;KEGG=Os03t0794800-01;Subcellular location=cytoplasm (GO:0005737)
Chr03	irgsp1_rep	five_prime_UTR	33049423	33049584	.	+	.	Parent=Os03t0794800-01
Chr03	irgsp1_rep	CDS	33049585	33049791	.	+	0	Parent=Os03t0794800-01
Chr03	irgsp1_rep	CDS	33049880	33049982	.	+	0	Parent=Os03t0794800-01
Chr03	irgsp1_rep	CDS	33050095	33050171	.	+	2	Parent=Os03t0794800-01
Chr03	irgsp1_rep	CDS	33050260	33050451	.	+	0	Parent=Os03t0794800-01
Chr03	irgsp1_rep	CDS	33050558	33050677	.	+	0	Parent=Os03t0794800-01
Chr03	irgsp1_rep	CDS	33050764	33050826	.	+	0	Parent=Os03t0794800-01
Chr03	irgsp1_rep	CDS	33050951	33051085	.	+	0	Parent=Os03t0794800-01
Chr03	irgsp1_rep	CDS	33051241	33051405	.	+	0	Parent=Os03t0794800-01
Chr03	irgsp1_rep	CDS	33051518	33051595	.	+	0	Parent=Os03t0794800-01
Chr03	irgsp1_rep	CDS	33053717	33053803	.	+	0	Parent=Os03t0794800-01
Chr03	irgsp1_rep	CDS	33053962	33054033	.	+	0	Parent=Os03t0794800-01
Chr03	irgsp1_rep	CDS	33055706	33055804	.	+	0	Parent=Os03t0794800-01
Chr03	irgsp1_rep	CDS	33056557	33056627	.	+	0	Parent=Os03t0794800-01
Chr03	irgsp1_rep	CDS	33057124	33057252	.	+	1	Parent=Os03t0794800-01
Chr03	irgsp1_rep	CDS	33057350	33057426	.	+	1	Parent=Os03t0794800-01
Chr03	irgsp1_rep	CDS	33057600	33057640	.	+	2	Parent=Os03t0794800-01
Chr03	irgsp1_rep	CDS	33057733	33057807	.	+	0	Parent=Os03t0794800-01
Chr03	irgsp1_rep	CDS	33057939	33058087	.	+	0	Parent=Os03t0794800-01
Chr03	irgsp1_rep	CDS	33058180	33058284	.	+	1	Parent=Os03t0794800-01
Chr03	irgsp1_rep	CDS	33058362	33058437	.	+	1	Parent=Os03t0794800-01
Chr03	irgsp1_rep	CDS	33058879	33058955	.	+	0	Parent=Os03t0794800-01
Chr03	irgsp1_rep	CDS	33059175	33059943	.	+	1	Parent=Os03t0794800-01
Chr03	irgsp1_rep	three_prime_UTR	33059944	33060334	.	+	.	Parent=Os03t0794800-01
Chr03	irgsp1_rep	mRNA	33058015	33060417	.	+	.	ID=Os03t0794800-02;Name=Os03t0794800-02;Locus_id=Os03g0794800;CGSNL Gene Symbol=XRN4;CGSNL Gene Name=5'-3' EXORIBONUCLEASE 4;Oryzabase Gene Symbol Synonym(s)=OsXrn4%2C Xrn4;Oryzabase Gene Name Synonym(s)=5'-3' exoribonuclease 4;Note=Hypothetical conserved gene.;Transcript_evidence=AK058269 (DDBJ%2C Best hit);ORF_evidence=A3ANK6 (UniProt);NIAS_FLcDNA=001-013-B02;Oryzabase=22101;Expression=AK058269;TENOR=Os03t0794800-02;KEGG=Os03t0794800-02
Chr03	irgsp1_rep	five_prime_UTR	33058015	33058016	.	+	.	Parent=Os03t0794800-02
Chr03	irgsp1_rep	CDS	33058017	33058087	.	+	0	Parent=Os03t0794800-02
Chr03	irgsp1_rep	CDS	33058180	33058284	.	+	1	Parent=Os03t0794800-02
Chr03	irgsp1_rep	CDS	33058362	33058437	.	+	1	Parent=Os03t0794800-02
Chr03	irgsp1_rep	CDS	33058879	33058955	.	+	0	Parent=Os03t0794800-02
Chr03	irgsp1_rep	CDS	33059175	33059943	.	+	1	Parent=Os03t0794800-02
Chr03	irgsp1_rep	three_prime_UTR	33059944	33060417	.	+	.	Parent=Os03t0794800-02
Chr03	irgsp1_rep	mRNA	33061357	33064910	.	+	.	ID=Os03t0794900-01;Name=Os03t0794900-01;Locus_id=Os03g0794900;Note=Frigida-like family protein.;Transcript_evidence=AK102390 (DDBJ%2C Best hit);ORF_evidence=B8AL99 (UniProt);InterPro=Frigida-like (IPR012474);NIAS_FLcDNA=J033092E14;Expression=AK102390;TENOR=Os03t0794900-01;KEGG=Os03t0794900-01
Chr03	irgsp1_rep	five_prime_UTR	33061357	33061498	.	+	.	Parent=Os03t0794900-01
Chr03	irgsp1_rep	CDS	33061499	33062402	.	+	0	Parent=Os03t0794900-01
Chr03	irgsp1_rep	CDS	33063550	33063725	.	+	2	Parent=Os03t0794900-01
Chr03	irgsp1_rep	CDS	33063983	33064555	.	+	0	Parent=Os03t0794900-01
Chr03	irgsp1_rep	three_prime_UTR	33064556	33064910	.	+	.	Parent=Os03t0794900-01
Chr03	irgsp1_rep	mRNA	33062767	33064867	.	+	.	ID=Os03t0794900-02;Name=Os03t0794900-02;Locus_id=Os03g0794900;Note=Similar to Proline-rich protein (Fragment).;Transcript_evidence=AK071241 (DDBJ%2C Best hit);ORF_evidence=B9F6F5 (UniProt);InterPro=Frigida-like (IPR012474);NIAS_FLcDNA=J023086L15;Expression=AK071241;TENOR=Os03t0794900-02;KEGG=Os03t0794900-02
Chr03	irgsp1_rep	five_prime_UTR	33062767	33062845	.	+	.	Parent=Os03t0794900-02
Chr03	irgsp1_rep	CDS	33062846	33062873	.	+	0	Parent=Os03t0794900-02
Chr03	irgsp1_rep	CDS	33063550	33063725	.	+	2	Parent=Os03t0794900-02
Chr03	irgsp1_rep	CDS	33063983	33064555	.	+	0	Parent=Os03t0794900-02
Chr03	irgsp1_rep	three_prime_UTR	33064556	33064867	.	+	.	Parent=Os03t0794900-02
Chr03	irgsp1_rep	mRNA	33063590	33064912	.	+	.	ID=Os03t0794900-03;Name=Os03t0794900-03;Locus_id=Os03g0794900;Note=Hypothetical conserved gene.;Transcript_evidence=AK104382 (DDBJ%2C Best hit),AK061765 (DDBJ%2C Best hit);ORF_evidence=B9F6F5 (UniProt);InterPro=Frigida-like (IPR012474);NIAS_FLcDNA=006-201-B02,001-039-B06;Expression=AK104382;TENOR=Os03t0794900-03;KEGG=Os03t0794900-03
Chr03	irgsp1_rep	five_prime_UTR	33063590	33063590	.	+	.	Parent=Os03t0794900-03
Chr03	irgsp1_rep	CDS	33063591	33063725	.	+	0	Parent=Os03t0794900-03
Chr03	irgsp1_rep	CDS	33063983	33064555	.	+	0	Parent=Os03t0794900-03
Chr03	irgsp1_rep	three_prime_UTR	33064556	33064912	.	+	.	Parent=Os03t0794900-03
Chr03	irgsp1_rep	mRNA	33065377	33070873	.	-	.	ID=Os03t0795000-01;Name=Os03t0795000-01;Locus_id=Os03g0795000;Note=Biopterin transport-related protein BT1 family protein.;Transcript_evidence=AK066562 (DDBJ%2C Best hit);ORF_evidence=Q10C46 (UniProt);InterPro=Biopterin transport-related protein BT1 (IPR004324),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J013074L13;Expression=AK066562;TENOR=Os03t0795000-01;KEGG=Os03t0795000-01
Chr03	irgsp1_rep	five_prime_UTR	33070671	33070873	.	-	.	Parent=Os03t0795000-01
Chr03	irgsp1_rep	CDS	33070571	33070670	.	-	0	Parent=Os03t0795000-01
Chr03	irgsp1_rep	CDS	33069441	33069562	.	-	2	Parent=Os03t0795000-01
Chr03	irgsp1_rep	CDS	33069182	33069246	.	-	0	Parent=Os03t0795000-01
Chr03	irgsp1_rep	CDS	33068925	33069087	.	-	1	Parent=Os03t0795000-01
Chr03	irgsp1_rep	CDS	33068206	33068354	.	-	0	Parent=Os03t0795000-01
Chr03	irgsp1_rep	CDS	33067881	33068129	.	-	1	Parent=Os03t0795000-01
Chr03	irgsp1_rep	CDS	33067106	33067274	.	-	1	Parent=Os03t0795000-01
Chr03	irgsp1_rep	CDS	33066937	33067029	.	-	0	Parent=Os03t0795000-01
Chr03	irgsp1_rep	CDS	33065861	33066145	.	-	0	Parent=Os03t0795000-01
Chr03	irgsp1_rep	three_prime_UTR	33065377	33065860	.	-	.	Parent=Os03t0795000-01
Chr03	irgsp1_rep	mRNA	33071830	33074545	.	-	.	ID=Os03t0795100-01;Name=Os03t0795100-01;Locus_id=Os03g0795100;Note=Conserved hypothetical protein.;Transcript_evidence=AK068731 (DDBJ%2C Best hit);ORF_evidence=B8ALA1 (UniProt);NIAS_FLcDNA=J013158I01;Expression=AK068731;TENOR=Os03t0795100-01;KEGG=Os03t0795100-01
Chr03	irgsp1_rep	five_prime_UTR	33074235	33074545	.	-	.	Parent=Os03t0795100-01
Chr03	irgsp1_rep	CDS	33073819	33074234	.	-	0	Parent=Os03t0795100-01
Chr03	irgsp1_rep	CDS	33072279	33072339	.	-	1	Parent=Os03t0795100-01
Chr03	irgsp1_rep	three_prime_UTR	33071830	33072278	.	-	.	Parent=Os03t0795100-01
Chr03	irgsp1_rep	mRNA	33078797	33080790	.	+	.	ID=Os03t0795200-01;Name=Os03t0795200-01;Locus_id=Os03g0795200;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK120623 (DDBJ%2C Best hit);ORF_evidence=A3ANL0 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J013152L18;Expression=AK120623;TENOR=Os03t0795200-01;KEGG=Os03t0795200-01
Chr03	irgsp1_rep	five_prime_UTR	33078797	33078827	.	+	.	Parent=Os03t0795200-01
Chr03	irgsp1_rep	CDS	33078828	33080663	.	+	0	Parent=Os03t0795200-01
Chr03	irgsp1_rep	three_prime_UTR	33080664	33080790	.	+	.	Parent=Os03t0795200-01
Chr03	irgsp1_rep	mRNA	33083878	33085552	.	-	.	ID=Os03t0795300-01;Name=Os03t0795300-01;Locus_id=Os03g0795300;Note=Similar to Extensin protein-like.;Transcript_evidence=AK064239 (DDBJ%2C Best hit);ORF_evidence=NP_001152233.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=002-105-A10;Expression=AK064239;TENOR=Os03t0795300-01;KEGG=Os03t0795300-01
Chr03	irgsp1_rep	five_prime_UTR	33085444	33085552	.	-	.	Parent=Os03t0795300-01
Chr03	irgsp1_rep	CDS	33084920	33085443	.	-	0	Parent=Os03t0795300-01
Chr03	irgsp1_rep	CDS	33083995	33084652	.	-	1	Parent=Os03t0795300-01
Chr03	irgsp1_rep	three_prime_UTR	33083878	33083994	.	-	.	Parent=Os03t0795300-01
Chr03	irgsp1_rep	mRNA	33084045	33085424	.	+	.	ID=Os03t0795350-00;Name=Os03t0795350-00;Locus_id=Os03g0795350;Note=Hypothetical gene.;Transcript_evidence=BT068200 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0795350-00;KEGG=Os03t0795350-00
Chr03	irgsp1_rep	five_prime_UTR	33084045	33084045	.	+	.	Parent=Os03t0795350-00
Chr03	irgsp1_rep	CDS	33084046	33084653	.	+	0	Parent=Os03t0795350-00
Chr03	irgsp1_rep	CDS	33085008	33085365	.	+	1	Parent=Os03t0795350-00
Chr03	irgsp1_rep	three_prime_UTR	33085366	33085424	.	+	.	Parent=Os03t0795350-00
Chr03	irgsp1_rep	mRNA	33091398	33093640	.	+	.	ID=Os03t0795400-00;Name=Os03t0795400-00;Locus_id=Os03g0795400;Note=Hypothetical conserved gene.;Transcript_evidence=EU947926 (DDBJ);ORF_evidence=NP_001051548.2 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os03t0795400-00;KEGG=Os03t0795400-00
Chr03	irgsp1_rep	five_prime_UTR	33091398	33091453	.	+	.	Parent=Os03t0795400-00
Chr03	irgsp1_rep	CDS	33091454	33093640	.	+	0	Parent=Os03t0795400-00
Chr03	irgsp1_rep	mRNA	33096176	33099400	.	+	.	ID=Os03t0795500-01;Name=Os03t0795500-01;Locus_id=Os03g0795500;Oryzabase Gene Symbol Synonym(s)=TRXz%2C OsTRXz;Oryzabase Gene Name Synonym(s)=thioredoxin OsTRXz%2C PITH domain-containing protein;Note=Thioredoxin%2C core domain containing protein.;Transcript_evidence=AK101877 (DDBJ%2C Best hit);ORF_evidence=B6SHZ5 (UniProt);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Thioredoxin (IPR005746),Galactose-binding domain-like (IPR008979),Proteasome-interacting thioredoxin-like domain%2C C-terminal (IPR010400);NIAS_FLcDNA=J033070H24;Oryzabase=23717;Expression=AK101877;TENOR=Os03t0795500-01;KEGG=Os03t0795500-01
Chr03	irgsp1_rep	five_prime_UTR	33096176	33096244	.	+	.	Parent=Os03t0795500-01
Chr03	irgsp1_rep	CDS	33096245	33096412	.	+	0	Parent=Os03t0795500-01
Chr03	irgsp1_rep	CDS	33096652	33096775	.	+	0	Parent=Os03t0795500-01
Chr03	irgsp1_rep	CDS	33097942	33097990	.	+	2	Parent=Os03t0795500-01
Chr03	irgsp1_rep	CDS	33098086	33098146	.	+	1	Parent=Os03t0795500-01
Chr03	irgsp1_rep	CDS	33098285	33098331	.	+	0	Parent=Os03t0795500-01
Chr03	irgsp1_rep	CDS	33098419	33098496	.	+	1	Parent=Os03t0795500-01
Chr03	irgsp1_rep	CDS	33098876	33098924	.	+	1	Parent=Os03t0795500-01
Chr03	irgsp1_rep	three_prime_UTR	33098925	33099400	.	+	.	Parent=Os03t0795500-01
Chr03	irgsp1_rep	mRNA	33099408	33101484	.	-	.	ID=Os03t0795600-01;Name=Os03t0795600-01;Locus_id=Os03g0795600;Note=Uncharacterised protein family UPF0005 domain containing protein.;Transcript_evidence=AK107547 (DDBJ%2C Best hit);ORF_evidence=NP_001151352.1 (RefSeq);InterPro=Inhibitor of apoptosis-promoting Bax1-related (IPR006214);NIAS_FLcDNA=002-130-A05;Expression=AK107547;TENOR=Os03t0795600-01;KEGG=Os03t0795600-01
Chr03	irgsp1_rep	five_prime_UTR	33101339	33101484	.	-	.	Parent=Os03t0795600-01
Chr03	irgsp1_rep	CDS	33101074	33101338	.	-	0	Parent=Os03t0795600-01
Chr03	irgsp1_rep	CDS	33100679	33100792	.	-	2	Parent=Os03t0795600-01
Chr03	irgsp1_rep	CDS	33100411	33100568	.	-	2	Parent=Os03t0795600-01
Chr03	irgsp1_rep	CDS	33099562	33099768	.	-	0	Parent=Os03t0795600-01
Chr03	irgsp1_rep	three_prime_UTR	33099408	33099561	.	-	.	Parent=Os03t0795600-01
Chr03	irgsp1_rep	mRNA	33103037	33105394	.	-	.	ID=Os03t0795800-01;Name=Os03t0795800-01;Locus_id=Os03g0795800;Note=Uncharacterised protein family UPF0005 domain containing protein.;Transcript_evidence=AK102207 (DDBJ%2C Best hit);ORF_evidence=NP_001149807.1 (RefSeq);InterPro=Inhibitor of apoptosis-promoting Bax1-related (IPR006214);NIAS_FLcDNA=J033087H03;Expression=AK102207;TENOR=Os03t0795800-01;KEGG=Os03t0795800-01
Chr03	irgsp1_rep	five_prime_UTR	33105192	33105394	.	-	.	Parent=Os03t0795800-01
Chr03	irgsp1_rep	CDS	33104945	33105191	.	-	0	Parent=Os03t0795800-01
Chr03	irgsp1_rep	CDS	33104724	33104837	.	-	2	Parent=Os03t0795800-01
Chr03	irgsp1_rep	CDS	33103558	33103715	.	-	2	Parent=Os03t0795800-01
Chr03	irgsp1_rep	CDS	33103227	33103433	.	-	0	Parent=Os03t0795800-01
Chr03	irgsp1_rep	three_prime_UTR	33103037	33103226	.	-	.	Parent=Os03t0795800-01
Chr03	irgsp1_rep	mRNA	33103050	33103436	.	-	.	ID=Os03t0795800-02;Name=Os03t0795800-02;Locus_id=Os03g0795800;Note=Similar to transmembrane BAX inhibitor motif-containing protein 4.;Transcript_evidence=AK120312 (DDBJ%2C Best hit);ORF_evidence=NP_001149807.1 (RefSeq);InterPro=Inhibitor of apoptosis-promoting Bax1-related (IPR006214);NIAS_FLcDNA=J013055J23;Expression=AK120312;TENOR=Os03t0795800-02;KEGG=Os03t0795800-02
Chr03	irgsp1_rep	CDS	33103227	33103436	.	-	0	Parent=Os03t0795800-02
Chr03	irgsp1_rep	three_prime_UTR	33103050	33103226	.	-	.	Parent=Os03t0795800-02
Chr03	irgsp1_rep	mRNA	33105843	33109034	.	+	.	ID=Os03t0795900-01;Name=Os03t0795900-01;Locus_id=Os03g0795900;RAP-DB Gene Symbol Synonym(s)=HSFA2E%2C HSfA2e%2C OsHsfA2e%2C OsHsf-12%2C HSF12;RAP-DB Gene Name Synonym(s)=HEAT STRESS TRANSCRIPTION FACTOR A2E%2C Heat stress transcription factor A2e%2C Heat stress transcription factor A-2e%2C Heat stress transcription factor 12;CGSNL Gene Symbol=HSFA2E;CGSNL Gene Name=HEAT STRESS TRANSCRIPTION FACTOR A2E;Oryzabase Gene Symbol Synonym(s)=HSfA2e%2C OsHsfA2e%2C OsHsf-12%2C OsHSF12%2C HSF12%2C OsHsfA2a%2C HsfA2a;Oryzabase Gene Name Synonym(s)=Heat stress transcription factor A2e%2C Heat stress transcription factor A-2e%2C Heat stress transcription factor 12;Note=Heat stress transcriptioon factor%2C High-temperature stress tolerance%2C Tolerance to environmental stresses;Transcript_evidence=AK068660;ORF_evidence=Q6F388;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Biological Process: response to heat (GO:0009408),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Cellular Component: nucleus (GO:0005634);InterPro=Heat shock transcription factor family (IPR027725),Heat shock transcription factor%2C plant (IPR027709),Winged helix-turn-helix DNA-binding domain (IPR011991),Heat shock factor (HSF)-type%2C DNA-binding (IPR000232);NIAS_FLcDNA=J013162K14;Manual Curation=April 20%2C 2015;Literature_PMID=18064488;Oryzabase=8552;Expression=AK068660;TENOR=Os03t0795900-01;KEGG=Os03t0795900-01
Chr03	irgsp1_rep	five_prime_UTR	33105843	33106463	.	+	.	Parent=Os03t0795900-01
Chr03	irgsp1_rep	CDS	33106464	33106754	.	+	0	Parent=Os03t0795900-01
Chr03	irgsp1_rep	CDS	33107954	33108736	.	+	0	Parent=Os03t0795900-01
Chr03	irgsp1_rep	three_prime_UTR	33108737	33109034	.	+	.	Parent=Os03t0795900-01
Chr03	irgsp1_rep	mRNA	33110648	33112591	.	+	.	ID=Os03t0796000-01;Name=Os03t0796000-01;Locus_id=Os03g0796000;Oryzabase Gene Symbol Synonym(s)=SI2;Oryzabase Gene Name Synonym(s)=sucrose induced 2;Note=Hypothetical conserved gene.;Transcript_evidence=AK106661 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-113-G12;Oryzabase=14319;Expression=AK106661;TENOR=Os03t0796000-01;KEGG=Os03t0796000-01
Chr03	irgsp1_rep	five_prime_UTR	33110648	33110811	.	+	.	Parent=Os03t0796000-01
Chr03	irgsp1_rep	five_prime_UTR	33110900	33111254	.	+	.	Parent=Os03t0796000-01
Chr03	irgsp1_rep	CDS	33111255	33112223	.	+	0	Parent=Os03t0796000-01
Chr03	irgsp1_rep	three_prime_UTR	33112224	33112591	.	+	.	Parent=Os03t0796000-01
Chr03	irgsp1_rep	mRNA	33110648	33118198	.	+	.	ID=Os03t0796000-02;Name=Os03t0796000-02;Locus_id=Os03g0796000;Oryzabase Gene Symbol Synonym(s)=SI2;Oryzabase Gene Name Synonym(s)=sucrose induced 2;Note=Similar to Ripening-associated protein (Fragment).;Transcript_evidence=AK064912 (DDBJ%2C Best hit);ORF_evidence=B3TM05 (UniProt);InterPro=Domain of unknown function DUF3700 (IPR024286),Domain of unknown function DUF3711 (IPR024287);NIAS_FLcDNA=J013000M11;Oryzabase=14319;Expression=AK064912;TENOR=Os03t0796000-02;KEGG=Os03t0796000-02
Chr03	irgsp1_rep	five_prime_UTR	33110648	33110791	.	+	.	Parent=Os03t0796000-02
Chr03	irgsp1_rep	CDS	33110792	33110811	.	+	0	Parent=Os03t0796000-02
Chr03	irgsp1_rep	CDS	33115403	33115646	.	+	1	Parent=Os03t0796000-02
Chr03	irgsp1_rep	CDS	33117406	33117526	.	+	0	Parent=Os03t0796000-02
Chr03	irgsp1_rep	CDS	33117633	33117820	.	+	2	Parent=Os03t0796000-02
Chr03	irgsp1_rep	three_prime_UTR	33117821	33118198	.	+	.	Parent=Os03t0796000-02
Chr03	irgsp1_rep	mRNA	33137576	33138066	.	-	.	ID=Os03t0796301-00;Name=Os03t0796301-00;Locus_id=Os03g0796301;Note=Similar to WW domain-binding protein 11.;Transcript_evidence=EU973089 (DDBJ);ORF_evidence=NP_001151978.1 (RefSeq);TENOR=Os03t0796301-00;KEGG=Os03t0796301-00
Chr03	irgsp1_rep	five_prime_UTR	33138056	33138066	.	-	.	Parent=Os03t0796301-00
Chr03	irgsp1_rep	CDS	33137576	33138055	.	-	0	Parent=Os03t0796301-00
Chr03	irgsp1_rep	mRNA	33138623	33141486	.	-	.	ID=Os03t0796400-01;Name=Os03t0796400-01;Locus_id=Os03g0796400;Oryzabase Gene Symbol Synonym(s)=OsSTA115;Note=EMSY N-terminal domain containing protein.;Transcript_evidence=AK109800 (DDBJ%2C Best hit);ORF_evidence=A2XMW9 (UniProt);InterPro=EMSY N-terminal (IPR005491);NIAS_FLcDNA=002-147-F03;Oryzabase=19406;TENOR=Os03t0796400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	33141344	33141486	.	-	.	Parent=Os03t0796400-01
Chr03	irgsp1_rep	five_prime_UTR	33141071	33141211	.	-	.	Parent=Os03t0796400-01
Chr03	irgsp1_rep	CDS	33141056	33141070	.	-	0	Parent=Os03t0796400-01
Chr03	irgsp1_rep	CDS	33139785	33140144	.	-	0	Parent=Os03t0796400-01
Chr03	irgsp1_rep	CDS	33138855	33139412	.	-	0	Parent=Os03t0796400-01
Chr03	irgsp1_rep	three_prime_UTR	33138623	33138854	.	-	.	Parent=Os03t0796400-01
Chr03	irgsp1_rep	mRNA	33143530	33146079	.	-	.	ID=Os03t0796501-00;Name=Os03t0796501-00;Locus_id=Os03g0796501;CGSNL Gene Symbol=RPL4;CGSNL Gene Name=RIBOSOMAL PROTEIN L4;Oryzabase Gene Symbol Synonym(s)=OsRPL4;Oryzabase Gene Name Synonym(s)=ribosomal protein L4%2C ribosomal protein large subunit 4;Note=Similar to 60S ribosomal protein L4 (L1).;Transcript_evidence=EU959581 (DDBJ);ORF_evidence=B6T3L6 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L4/L1e (IPR002136),Ribosomal protein L4/L1e%2C eukaryotic/archaeal%2C conserved site (IPR013000),Ribosomal protein L4 domain (IPR023574);Oryzabase=22190;TENOR=Os03t0796501-00;KEGG=Os03t0796501-00
Chr03	irgsp1_rep	five_prime_UTR	33145989	33146079	.	-	.	Parent=Os03t0796501-00
Chr03	irgsp1_rep	CDS	33144888	33145988	.	-	0	Parent=Os03t0796501-00
Chr03	irgsp1_rep	CDS	33143821	33143934	.	-	0	Parent=Os03t0796501-00
Chr03	irgsp1_rep	three_prime_UTR	33143530	33143820	.	-	.	Parent=Os03t0796501-00
Chr03	irgsp1_rep	mRNA	33156506	33157052	.	+	.	ID=Os03t0796502-00;Name=Os03t0796502-00;Locus_id=Os03g0796502;Note=Non-protein coding transcript.;Transcript_evidence=FP094971 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0796502-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	exon	33156506	33157052	.	+	.	Parent=Os03t0796502-00
Chr03	irgsp1_rep	mRNA	33169846	33172084	.	+	.	ID=Os03t0796600-01;Name=Os03t0796600-01;Locus_id=Os03g0796600;Note=Protein of unknown function DUF506%2C plant family protein.;Transcript_evidence=AK105257 (DDBJ%2C Best hit);ORF_evidence=NP_001147475.1 (RefSeq);InterPro=Protein of unknown function DUF506%2C plant (IPR006502);NIAS_FLcDNA=001-114-G01;Expression=AK105257;TENOR=Os03t0796600-01;KEGG=Os03t0796600-01
Chr03	irgsp1_rep	five_prime_UTR	33169846	33170099	.	+	.	Parent=Os03t0796600-01
Chr03	irgsp1_rep	CDS	33170100	33170543	.	+	0	Parent=Os03t0796600-01
Chr03	irgsp1_rep	CDS	33170664	33170856	.	+	0	Parent=Os03t0796600-01
Chr03	irgsp1_rep	CDS	33170951	33171531	.	+	2	Parent=Os03t0796600-01
Chr03	irgsp1_rep	three_prime_UTR	33171532	33172084	.	+	.	Parent=Os03t0796600-01
Chr03	irgsp1_rep	mRNA	33171636	33172084	.	+	.	ID=Os03t0796600-02;Name=Os03t0796600-02;Locus_id=Os03g0796600;Note=Non-protein coding transcript.;Transcript_evidence=AK062757 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-106-G09;TENOR=Os03t0796600-02
Chr03	irgsp1_rep	exon	33171636	33172084	.	+	.	Parent=Os03t0796600-02
Chr03	irgsp1_rep	mRNA	33180922	33181636	.	-	.	ID=Os03t0796700-00;Name=Os03t0796700-00;Locus_id=Os03g0796700;Note=Conserved hypothetical protein.;Transcript_evidence=BT039255 (DDBJ);ORF_evidence=B4FQ67 (UniProt);TENOR=Os03t0796700-00
Chr03	irgsp1_rep	five_prime_UTR	33181563	33181636	.	-	.	Parent=Os03t0796700-00
Chr03	irgsp1_rep	CDS	33180924	33181562	.	-	0	Parent=Os03t0796700-00
Chr03	irgsp1_rep	three_prime_UTR	33180922	33180923	.	-	.	Parent=Os03t0796700-00
Chr03	irgsp1_rep	mRNA	33184009	33187019	.	+	.	ID=Os03t0796800-00;Name=Os03t0796800-00;Locus_id=Os03g0796800;Note=Similar to guanylate-binding family protein.;Transcript_evidence=BT038634 (DDBJ);ORF_evidence=NP_181418.2 (RefSeq);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Guanylate-binding protein%2C C-terminal (IPR003191);TENOR=Os03t0796800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	33184009	33184072	.	+	0	Parent=Os03t0796800-00
Chr03	irgsp1_rep	CDS	33184171	33184190	.	+	2	Parent=Os03t0796800-00
Chr03	irgsp1_rep	CDS	33184272	33184337	.	+	0	Parent=Os03t0796800-00
Chr03	irgsp1_rep	CDS	33184540	33184707	.	+	0	Parent=Os03t0796800-00
Chr03	irgsp1_rep	CDS	33184786	33185043	.	+	0	Parent=Os03t0796800-00
Chr03	irgsp1_rep	CDS	33185512	33185724	.	+	0	Parent=Os03t0796800-00
Chr03	irgsp1_rep	CDS	33186238	33186509	.	+	0	Parent=Os03t0796800-00
Chr03	irgsp1_rep	CDS	33186601	33186748	.	+	1	Parent=Os03t0796800-00
Chr03	irgsp1_rep	three_prime_UTR	33186749	33187019	.	+	.	Parent=Os03t0796800-00
Chr03	irgsp1_rep	mRNA	33187429	33191788	.	-	.	ID=Os03t0796900-01;Name=Os03t0796900-01;Locus_id=Os03g0796900;RAP-DB Gene Symbol Synonym(s)=REB%2C OsZIP33%2C RISBZ2%2C OsbZIP33;RAP-DB Gene Name Synonym(s)=ENDOSPERM BZIP%2C rice endosperm bZIP%2C bZIP transcription factor 33%2C rice seed b-Zipper 2%2C b-ZIP transcription factor 33;CGSNL Gene Symbol=REB;CGSNL Gene Name=ENDOSPERM BZIP;Oryzabase Gene Symbol Synonym(s)=OsZIP33%2C RISBZ2%2C OsbZIP33;Oryzabase Gene Name Synonym(s)=rice endosperm bZIP%2C bZIP transcription factor 33%2C rice seed b-Zipper 2%2C b-ZIP transcription factor 33;Note=bZIP transcription factor%2C Globulin gene promoter in endosperm;Transcript_evidence=D78609,AK068589;ORF_evidence=P93405,Q7X9A8;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Basic-leucine zipper domain (IPR004827),Basic leucine-zipper%2C C-terminal (IPR020983);NIAS_FLcDNA=J013153H07;Manual Curation=December 11%2C 2009;Literature_PMID=9049271,11572990;Oryzabase=2990;Expression=AK068589;TENOR=Os03t0796900-01;KEGG=Os03t0796900-01
Chr03	irgsp1_rep	five_prime_UTR	33191610	33191788	.	-	.	Parent=Os03t0796900-01
Chr03	irgsp1_rep	CDS	33191187	33191609	.	-	0	Parent=Os03t0796900-01
Chr03	irgsp1_rep	CDS	33190080	33190173	.	-	0	Parent=Os03t0796900-01
Chr03	irgsp1_rep	CDS	33189349	33189544	.	-	2	Parent=Os03t0796900-01
Chr03	irgsp1_rep	CDS	33188470	33188545	.	-	1	Parent=Os03t0796900-01
Chr03	irgsp1_rep	CDS	33188256	33188381	.	-	0	Parent=Os03t0796900-01
Chr03	irgsp1_rep	CDS	33187690	33188052	.	-	0	Parent=Os03t0796900-01
Chr03	irgsp1_rep	three_prime_UTR	33187429	33187689	.	-	.	Parent=Os03t0796900-01
Chr03	irgsp1_rep	mRNA	33188254	33191617	.	+	.	ID=Os03t0796950-00;Name=Os03t0796950-00;Locus_id=Os03g0796950;Note=Hypothetical protein.;Transcript_evidence=BT016530 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0796950-00
Chr03	irgsp1_rep	five_prime_UTR	33188254	33188383	.	+	.	Parent=Os03t0796950-00
Chr03	irgsp1_rep	five_prime_UTR	33188468	33188582	.	+	.	Parent=Os03t0796950-00
Chr03	irgsp1_rep	five_prime_UTR	33189383	33189589	.	+	.	Parent=Os03t0796950-00
Chr03	irgsp1_rep	CDS	33189590	33189610	.	+	0	Parent=Os03t0796950-00
Chr03	irgsp1_rep	CDS	33191176	33191617	.	+	0	Parent=Os03t0796950-00
Chr03	irgsp1_rep	mRNA	33194541	33198077	.	-	.	ID=Os03t0797000-01;Name=Os03t0797000-01;Locus_id=Os03g0797000;Oryzabase Gene Name Synonym(s)=OsTSAlike;Note=Similar to Indole synthase.;Transcript_evidence=AK073440 (DDBJ%2C Best hit);ORF_evidence=NP_001105002.1 (RefSeq);GO=Biological Process: tryptophan metabolic process (GO:0006568),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: tryptophan synthase activity (GO:0004834);InterPro=Tryptophan synthase%2C alpha chain (IPR002028),Ribulose-phosphate binding barrel (IPR011060),Aldolase-type TIM barrel (IPR013785),Tryptophan synthase%2C alpha chain%2C active site (IPR018204);NIAS_FLcDNA=J033046F03;Oryzabase=10019;Expression=AK073440;TENOR=Os03t0797000-01;KEGG=Os03t0797000-01 (EC:4.2.1.20)
Chr03	irgsp1_rep	five_prime_UTR	33197911	33198077	.	-	.	Parent=Os03t0797000-01
Chr03	irgsp1_rep	CDS	33197821	33197910	.	-	0	Parent=Os03t0797000-01
Chr03	irgsp1_rep	CDS	33196946	33197092	.	-	0	Parent=Os03t0797000-01
Chr03	irgsp1_rep	CDS	33196685	33196859	.	-	0	Parent=Os03t0797000-01
Chr03	irgsp1_rep	CDS	33195930	33196006	.	-	2	Parent=Os03t0797000-01
Chr03	irgsp1_rep	CDS	33195678	33195755	.	-	0	Parent=Os03t0797000-01
Chr03	irgsp1_rep	CDS	33195214	33195291	.	-	0	Parent=Os03t0797000-01
Chr03	irgsp1_rep	CDS	33195033	33195092	.	-	0	Parent=Os03t0797000-01
Chr03	irgsp1_rep	CDS	33194818	33194952	.	-	0	Parent=Os03t0797000-01
Chr03	irgsp1_rep	three_prime_UTR	33194541	33194817	.	-	.	Parent=Os03t0797000-01
Chr03	irgsp1_rep	mRNA	33207531	33208198	.	-	.	ID=Os03t0797300-01;Name=Os03t0797300-01;Locus_id=Os03g0797300;Note=Similar to benzoxazinless1.;Transcript_evidence=AK240862 (DDBJ%2C Best hit);ORF_evidence=NP_001105219.1 (RefSeq);NIAS_FLcDNA=J065023A09;TENOR=Os03t0797300-01;KEGG=Os03t0797300-01
Chr03	irgsp1_rep	five_prime_UTR	33208198	33208198	.	-	.	Parent=Os03t0797300-01
Chr03	irgsp1_rep	CDS	33208111	33208197	.	-	0	Parent=Os03t0797300-01
Chr03	irgsp1_rep	three_prime_UTR	33207531	33208110	.	-	.	Parent=Os03t0797300-01
Chr03	irgsp1_rep	mRNA	33214544	33217418	.	-	.	ID=Os03t0797400-01;Name=Os03t0797400-01;Locus_id=Os03g0797400;Oryzabase Gene Symbol Synonym(s)=OsIGL%2C OsIgl;Oryzabase Gene Name Synonym(s)=indole-3-glycerol phosphate lyase;Note=Similar to Indole-3-glycerol phosphate lyase.;Transcript_evidence=AK072595 (DDBJ%2C Best hit);ORF_evidence=Q9FQ77 (UniProt);GO=Biological Process: tryptophan metabolic process (GO:0006568),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: tryptophan synthase activity (GO:0004834);InterPro=Tryptophan synthase%2C alpha chain (IPR002028),Ribulose-phosphate binding barrel (IPR011060),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J023125E11;Oryzabase=10018;Expression=AK072595;TENOR=Os03t0797400-01;KEGG=Os03t0797400-01 (EC:4.1.2.8)
Chr03	irgsp1_rep	five_prime_UTR	33217286	33217418	.	-	.	Parent=Os03t0797400-01
Chr03	irgsp1_rep	CDS	33216739	33217285	.	-	0	Parent=Os03t0797400-01
Chr03	irgsp1_rep	CDS	33215462	33215538	.	-	2	Parent=Os03t0797400-01
Chr03	irgsp1_rep	CDS	33215275	33215352	.	-	0	Parent=Os03t0797400-01
Chr03	irgsp1_rep	CDS	33215041	33215178	.	-	0	Parent=Os03t0797400-01
Chr03	irgsp1_rep	CDS	33214807	33214941	.	-	0	Parent=Os03t0797400-01
Chr03	irgsp1_rep	three_prime_UTR	33214544	33214806	.	-	.	Parent=Os03t0797400-01
Chr03	irgsp1_rep	mRNA	33226461	33228543	.	-	.	ID=Os03t0797500-01;Name=Os03t0797500-01;Locus_id=Os03g0797500;Note=Similar to Indole-3-glycerol phosphate lyase (Fragment).;Transcript_evidence=AK288107 (DDBJ%2C Best hit);ORF_evidence=Q5QIT0 (UniProt);GO=Biological Process: tryptophan metabolic process (GO:0006568),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: tryptophan synthase activity (GO:0004834);InterPro=Tryptophan synthase%2C alpha chain (IPR002028),Ribulose-phosphate binding barrel (IPR011060),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J075197K20;TENOR=Os03t0797500-01;KEGG=Os03t0797500-01 (EC:4.2.1.20)
Chr03	irgsp1_rep	five_prime_UTR	33228397	33228543	.	-	.	Parent=Os03t0797500-01
Chr03	irgsp1_rep	CDS	33227853	33228396	.	-	0	Parent=Os03t0797500-01
Chr03	irgsp1_rep	CDS	33227400	33227476	.	-	2	Parent=Os03t0797500-01
Chr03	irgsp1_rep	CDS	33227220	33227297	.	-	0	Parent=Os03t0797500-01
Chr03	irgsp1_rep	CDS	33226968	33227105	.	-	0	Parent=Os03t0797500-01
Chr03	irgsp1_rep	CDS	33226729	33226863	.	-	0	Parent=Os03t0797500-01
Chr03	irgsp1_rep	three_prime_UTR	33226461	33226728	.	-	.	Parent=Os03t0797500-01
Chr03	irgsp1_rep	mRNA	33233106	33236943	.	+	.	ID=Os03t0797600-01;Name=Os03t0797600-01;Locus_id=Os03g0797600;Oryzabase Gene Symbol Synonym(s)=OsbHLH098;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 098;Note=Similar to Helix-loop-helix protein homolog.;Transcript_evidence=AK067446 (DDBJ%2C Best hit),AK104412 (DDBJ%2C Best hit);ORF_evidence=F1DKA9 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J013106A12,006-203-H10;Oryzabase=15383;TENOR=Os03t0797600-01
Chr03	irgsp1_rep	five_prime_UTR	33233106	33233211	.	+	.	Parent=Os03t0797600-01
Chr03	irgsp1_rep	CDS	33233212	33233439	.	+	0	Parent=Os03t0797600-01
Chr03	irgsp1_rep	CDS	33233577	33233672	.	+	0	Parent=Os03t0797600-01
Chr03	irgsp1_rep	CDS	33233771	33233893	.	+	0	Parent=Os03t0797600-01
Chr03	irgsp1_rep	CDS	33234688	33234753	.	+	0	Parent=Os03t0797600-01
Chr03	irgsp1_rep	CDS	33235113	33235178	.	+	0	Parent=Os03t0797600-01
Chr03	irgsp1_rep	CDS	33235266	33235340	.	+	0	Parent=Os03t0797600-01
Chr03	irgsp1_rep	CDS	33236531	33236761	.	+	0	Parent=Os03t0797600-01
Chr03	irgsp1_rep	three_prime_UTR	33236762	33236943	.	+	.	Parent=Os03t0797600-01
Chr03	irgsp1_rep	mRNA	33233107	33236885	.	+	.	ID=Os03t0797600-02;Name=Os03t0797600-02;Locus_id=Os03g0797600;Oryzabase Gene Symbol Synonym(s)=OsbHLH098;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 098;Note=Similar to BHLH transcription factor.;Transcript_evidence=AK068388 (DDBJ%2C Best hit);ORF_evidence=F1DKA9 (UniProt);NIAS_FLcDNA=J013145C08;Oryzabase=15383;Expression=AK068388;TENOR=Os03t0797600-02;KEGG=Os03t0797600-02
Chr03	irgsp1_rep	five_prime_UTR	33233107	33233211	.	+	.	Parent=Os03t0797600-02
Chr03	irgsp1_rep	CDS	33233212	33233439	.	+	0	Parent=Os03t0797600-02
Chr03	irgsp1_rep	CDS	33233577	33233893	.	+	0	Parent=Os03t0797600-02
Chr03	irgsp1_rep	CDS	33234688	33234691	.	+	1	Parent=Os03t0797600-02
Chr03	irgsp1_rep	three_prime_UTR	33234692	33234753	.	+	.	Parent=Os03t0797600-02
Chr03	irgsp1_rep	three_prime_UTR	33235113	33235178	.	+	.	Parent=Os03t0797600-02
Chr03	irgsp1_rep	three_prime_UTR	33235266	33235340	.	+	.	Parent=Os03t0797600-02
Chr03	irgsp1_rep	three_prime_UTR	33236531	33236885	.	+	.	Parent=Os03t0797600-02
Chr03	irgsp1_rep	mRNA	33240323	33244375	.	+	.	ID=Os03t0797700-01;Name=Os03t0797700-01;Locus_id=Os03g0797700;Note=rRNA-processing protein EFG1 domain containing protein.;Transcript_evidence=AK061648 (DDBJ%2C Best hit);ORF_evidence=B8ALB3 (UniProt);InterPro=rRNA-processing protein EFG1 (IPR019310);NIAS_FLcDNA=001-036-B12;Expression=AK061648;TENOR=Os03t0797700-01;KEGG=Os03t0797700-01
Chr03	irgsp1_rep	five_prime_UTR	33240323	33240425	.	+	.	Parent=Os03t0797700-01
Chr03	irgsp1_rep	CDS	33240426	33240581	.	+	0	Parent=Os03t0797700-01
Chr03	irgsp1_rep	CDS	33241685	33241814	.	+	0	Parent=Os03t0797700-01
Chr03	irgsp1_rep	CDS	33241917	33242029	.	+	2	Parent=Os03t0797700-01
Chr03	irgsp1_rep	CDS	33242341	33242479	.	+	0	Parent=Os03t0797700-01
Chr03	irgsp1_rep	CDS	33242629	33242737	.	+	2	Parent=Os03t0797700-01
Chr03	irgsp1_rep	CDS	33243188	33243251	.	+	1	Parent=Os03t0797700-01
Chr03	irgsp1_rep	CDS	33243358	33243597	.	+	0	Parent=Os03t0797700-01
Chr03	irgsp1_rep	CDS	33244137	33244142	.	+	0	Parent=Os03t0797700-01
Chr03	irgsp1_rep	three_prime_UTR	33244143	33244375	.	+	.	Parent=Os03t0797700-01
Chr03	irgsp1_rep	mRNA	33240388	33244357	.	+	.	ID=Os03t0797700-02;Name=Os03t0797700-02;Locus_id=Os03g0797700;Note=rRNA-processing protein EFG1 domain containing protein.;Transcript_evidence=AK098876 (DDBJ%2C Best hit);ORF_evidence=B8ALB3 (UniProt);InterPro=rRNA-processing protein EFG1 (IPR019310);NIAS_FLcDNA=J013001D18;Expression=AK098876;TENOR=Os03t0797700-02;KEGG=Os03t0797700-02
Chr03	irgsp1_rep	five_prime_UTR	33240388	33240425	.	+	.	Parent=Os03t0797700-02
Chr03	irgsp1_rep	CDS	33240426	33240581	.	+	0	Parent=Os03t0797700-02
Chr03	irgsp1_rep	CDS	33241685	33241814	.	+	0	Parent=Os03t0797700-02
Chr03	irgsp1_rep	CDS	33241917	33242029	.	+	2	Parent=Os03t0797700-02
Chr03	irgsp1_rep	CDS	33242341	33242479	.	+	0	Parent=Os03t0797700-02
Chr03	irgsp1_rep	CDS	33242629	33242737	.	+	2	Parent=Os03t0797700-02
Chr03	irgsp1_rep	CDS	33243188	33243251	.	+	1	Parent=Os03t0797700-02
Chr03	irgsp1_rep	CDS	33243358	33243597	.	+	0	Parent=Os03t0797700-02
Chr03	irgsp1_rep	CDS	33244137	33244142	.	+	0	Parent=Os03t0797700-02
Chr03	irgsp1_rep	three_prime_UTR	33244143	33244357	.	+	.	Parent=Os03t0797700-02
Chr03	irgsp1_rep	mRNA	33246011	33247318	.	-	.	ID=Os03t0797800-01;Name=Os03t0797800-01;Locus_id=Os03g0797800;CGSNL Gene Symbol=IAA14;Oryzabase Gene Symbol Synonym(s)=OsIAA14%2C AUX/IAA14%2C OsAUX/IAA14;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 14;Note=AUX/IAA protein family protein.;Transcript_evidence=AK059619 (DDBJ%2C Best hit);ORF_evidence=Q7Y1H8 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Aux/IAA-ARF-dimerisation (IPR011525);NIAS_FLcDNA=001-030-G11;Oryzabase=10903;Expression=AK059619;TENOR=Os03t0797800-01;KEGG=Os03t0797800-01
Chr03	irgsp1_rep	five_prime_UTR	33247260	33247318	.	-	.	Parent=Os03t0797800-01
Chr03	irgsp1_rep	CDS	33247069	33247259	.	-	0	Parent=Os03t0797800-01
Chr03	irgsp1_rep	CDS	33246638	33246982	.	-	1	Parent=Os03t0797800-01
Chr03	irgsp1_rep	CDS	33246487	33246544	.	-	1	Parent=Os03t0797800-01
Chr03	irgsp1_rep	three_prime_UTR	33246011	33246486	.	-	.	Parent=Os03t0797800-01
Chr03	irgsp1_rep	mRNA	33252710	33253101	.	+	.	ID=Os03t0797902-00;Name=Os03t0797902-00;Locus_id=Os03g0797902;Note=Conserved hypothetical protein.;Transcript_evidence=FP099914 (DDBJ);ORF_evidence=B9F6G7 (UniProt);TENOR=Os03t0797902-00
Chr03	irgsp1_rep	CDS	33252710	33252985	.	+	0	Parent=Os03t0797902-00
Chr03	irgsp1_rep	three_prime_UTR	33252986	33253101	.	+	.	Parent=Os03t0797902-00
Chr03	irgsp1_rep	mRNA	33253749	33257099	.	-	.	ID=Os03t0798000-01;Name=Os03t0798000-01;Locus_id=Os03g0798000;Note=Similar to Aldehyde oxidase-2.;Transcript_evidence=AK242875 (DDBJ%2C Best hit);ORF_evidence=O23888 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldehyde oxidase/xanthine dehydrogenase%2C molybdopterin binding (IPR008274);NIAS_FLcDNA=J090077K21;TENOR=Os03t0798000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	33257033	33257099	.	-	.	Parent=Os03t0798000-01
Chr03	irgsp1_rep	five_prime_UTR	33256285	33256578	.	-	.	Parent=Os03t0798000-01
Chr03	irgsp1_rep	CDS	33255856	33256284	.	-	0	Parent=Os03t0798000-01
Chr03	irgsp1_rep	three_prime_UTR	33253749	33255855	.	-	.	Parent=Os03t0798000-01
Chr03	irgsp1_rep	mRNA	33259405	33260232	.	-	.	ID=Os03t0798101-00;Name=Os03t0798101-00;Locus_id=Os03g0798101;Note=Similar to Aldehyde oxidase.;Transcript_evidence=ab initio prediction;ORF_evidence=O23887 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldehyde oxidase/xanthine dehydrogenase%2C molybdopterin binding (IPR008274);TENOR=Os03t0798101-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	33260031	33260232	.	-	0	Parent=Os03t0798101-00
Chr03	irgsp1_rep	CDS	33259405	33259541	.	-	2	Parent=Os03t0798101-00
Chr03	irgsp1_rep	mRNA	33267192	33272140	.	+	.	ID=Os03t0798200-01;Name=Os03t0798200-01;Locus_id=Os03g0798200;RAP-DB Gene Symbol Synonym(s)=OsSIRP2;RAP-DB Gene Name Synonym(s)=Oryza sativa salt induced RING finger protein 2;Oryzabase Gene Symbol Synonym(s)=OsRFP%2C OsSIRP2%2C SIRP2;Oryzabase Gene Name Synonym(s)=RING finger protein%2C salt-induced RING E3 ligase 2%2C salt induced Really Interesting New Gene finger protein 2;Note=RING Ub E3 ligase%2C Positive regulator of salt and osmotic stress tolerance;Transcript_evidence=AK071950,AK071454;ORF_evidence=Q10C16;GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841),Zinc finger%2C C3HC4 RING-type (IPR018957),Zinc finger%2C RING-type%2C conserved site (IPR017907);NIAS_FLcDNA=J013082L02,J023089D17;Manual Curation=February 16%2C 2018;Literature_PMID=29285618;Oryzabase=21165;Expression=AK071950;TENOR=Os03t0798200-01;KEGG=Os03t0798200-01;Subcellular location=nucleus (GO:0005634)
Chr03	irgsp1_rep	five_prime_UTR	33267192	33267372	.	+	.	Parent=Os03t0798200-01
Chr03	irgsp1_rep	CDS	33267373	33267532	.	+	0	Parent=Os03t0798200-01
Chr03	irgsp1_rep	CDS	33268762	33268861	.	+	2	Parent=Os03t0798200-01
Chr03	irgsp1_rep	CDS	33269554	33269767	.	+	1	Parent=Os03t0798200-01
Chr03	irgsp1_rep	CDS	33270472	33270812	.	+	0	Parent=Os03t0798200-01
Chr03	irgsp1_rep	CDS	33270902	33270952	.	+	1	Parent=Os03t0798200-01
Chr03	irgsp1_rep	CDS	33271037	33271109	.	+	1	Parent=Os03t0798200-01
Chr03	irgsp1_rep	CDS	33271643	33271861	.	+	0	Parent=Os03t0798200-01
Chr03	irgsp1_rep	three_prime_UTR	33271862	33272140	.	+	.	Parent=Os03t0798200-01
Chr03	irgsp1_rep	mRNA	33267407	33268862	.	-	.	ID=Os03t0798233-00;Name=Os03t0798233-00;Locus_id=Os03g0798233;Note=Non-protein coding transcript.;Transcript_evidence=BT084541 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0798233-00
Chr03	irgsp1_rep	exon	33268759	33268862	.	-	.	Parent=Os03t0798233-00
Chr03	irgsp1_rep	exon	33267407	33267530	.	-	.	Parent=Os03t0798233-00
Chr03	irgsp1_rep	mRNA	33273924	33274126	.	+	.	ID=Os03t0798266-00;Name=Os03t0798266-00;Locus_id=Os03g0798266;Note=Non-protein coding transcript.;Transcript_evidence=FP100236 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0798266-00
Chr03	irgsp1_rep	exon	33273924	33274126	.	+	.	Parent=Os03t0798266-00
Chr03	irgsp1_rep	mRNA	33275003	33281026	.	+	.	ID=Os03t0798300-01;Name=Os03t0798300-01;Locus_id=Os03g0798300;RAP-DB Gene Symbol Synonym(s)=MET1A%2C OsMET1-1;RAP-DB Gene Name Synonym(s)=METHYLTRANSFERASE 1A%2C DNA methyltransferase 1-1;CGSNL Gene Symbol=MET1A;CGSNL Gene Name=METHYLTRANSFERASE 1A;Oryzabase Gene Symbol Synonym(s)=OsMET1a%2C OsMET1-1%2C MET1a%2C MET1-1%2C OsMET1;Oryzabase Gene Name Synonym(s)=DNA methyltransferase 1-1;Note=DNA methyltransferase%2C Maintenance of methylation%2C Gene silencing;Transcript_evidence=AF462029;ORF_evidence=Q7Y1I7-2;GO=Biological Process: DNA methylation (GO:0006306),Biological Process: C-5 methylation of cytosine (GO:0090116),Molecular Function: DNA binding (GO:0003677),Molecular Function: Chromatin binding (GO:0003682),Molecular Function: DNA (cytosine-5-)-methyltransferase activity (GO:0003886),Molecular Function: methyltransferase activity (GO:0008168),Cellular Component: nucleus (GO:0005634);InterPro=C-5 cytosine methyltransferase (IPR001525),DNA (cytosine-5)-methyltransferase 1%2C eukaryote (IPR017198),DNA (cytosine-5)-methyltransferase 1%2C replication foci domain (IPR022702),Bromo adjacent homology (BAH) domain (IPR001025),S-adenosyl-L-methionine-dependent methyltransferase-like (IPR029063),DNA methylase%2C C-5 cytosine-specific%2C active site (IPR018117);Manual Curation=June 18%2C 2014;Literature_PMID=14513380;Oryzabase=8843;TENOR=Os03t0798300-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	33275003	33275021	.	+	0	Parent=Os03t0798300-01
Chr03	irgsp1_rep	CDS	33275073	33276534	.	+	2	Parent=Os03t0798300-01
Chr03	irgsp1_rep	CDS	33276782	33278261	.	+	1	Parent=Os03t0798300-01
Chr03	irgsp1_rep	CDS	33278372	33278536	.	+	0	Parent=Os03t0798300-01
Chr03	irgsp1_rep	CDS	33278646	33278838	.	+	0	Parent=Os03t0798300-01
Chr03	irgsp1_rep	CDS	33278916	33279027	.	+	2	Parent=Os03t0798300-01
Chr03	irgsp1_rep	CDS	33279116	33279263	.	+	1	Parent=Os03t0798300-01
Chr03	irgsp1_rep	CDS	33279365	33279562	.	+	0	Parent=Os03t0798300-01
Chr03	irgsp1_rep	CDS	33279648	33279926	.	+	0	Parent=Os03t0798300-01
Chr03	irgsp1_rep	CDS	33280026	33280187	.	+	0	Parent=Os03t0798300-01
Chr03	irgsp1_rep	CDS	33280286	33280504	.	+	0	Parent=Os03t0798300-01
Chr03	irgsp1_rep	CDS	33280895	33281026	.	+	0	Parent=Os03t0798300-01
Chr03	irgsp1_rep	mRNA	33273313	33281352	.	+	.	ID=Os03t0798300-02;Name=Os03t0798300-02;Locus_id=Os03g0798300;RAP-DB Gene Symbol Synonym(s)=MET1A%2C OsMET1a;RAP-DB Gene Name Synonym(s)=METHYLTRANSFERASE 1A%2C DNA methyltransferase 1-1;CGSNL Gene Symbol=MET1A;CGSNL Gene Name=METHYLTRANSFERASE 1A;Oryzabase Gene Symbol Synonym(s)=OsMET1a%2C OsMET1-1%2C MET1a%2C MET1-1%2C OsMET1;Oryzabase Gene Name Synonym(s)=DNA methyltransferase 1-1;Note=DNA methyltransferase%2C Maintenance of CpG methylation after DNA replication;Transcript_evidence=AB362510;ORF_evidence=Q7Y1I7-1;GO=Biological Process: DNA methylation (GO:0006306),Biological Process: C-5 methylation of cytosine (GO:0090116),Molecular Function: DNA binding (GO:0003677),Molecular Function: Chromatin binding (GO:0003682),Molecular Function: DNA (cytosine-5-)-methyltransferase activity (GO:0003886),Molecular Function: methyltransferase activity (GO:0008168),Cellular Component: nucleus (GO:0005634);InterPro=C-5 cytosine methyltransferase (IPR001525),DNA (cytosine-5)-methyltransferase 1%2C eukaryote (IPR017198),DNA (cytosine-5)-methyltransferase 1%2C replication foci domain (IPR022702),Bromo adjacent homology (BAH) domain (IPR001025),S-adenosyl-L-methionine-dependent methyltransferase-like (IPR029063),DNA methylase%2C C-5 cytosine-specific%2C active site (IPR018117);Manual Curation=May 29%2C 2014;Literature_PMID=18281124;Oryzabase=8843
Chr03	irgsp1_rep	five_prime_UTR	33273313	33273449	.	+	.	Parent=Os03t0798300-02
Chr03	irgsp1_rep	five_prime_UTR	33273925	33273989	.	+	.	Parent=Os03t0798300-02
Chr03	irgsp1_rep	five_prime_UTR	33274623	33274629	.	+	.	Parent=Os03t0798300-02
Chr03	irgsp1_rep	CDS	33274630	33274663	.	+	0	Parent=Os03t0798300-02
Chr03	irgsp1_rep	CDS	33275073	33276534	.	+	2	Parent=Os03t0798300-02
Chr03	irgsp1_rep	CDS	33276782	33278261	.	+	1	Parent=Os03t0798300-02
Chr03	irgsp1_rep	CDS	33278372	33278536	.	+	0	Parent=Os03t0798300-02
Chr03	irgsp1_rep	CDS	33278646	33278838	.	+	0	Parent=Os03t0798300-02
Chr03	irgsp1_rep	CDS	33278916	33279027	.	+	2	Parent=Os03t0798300-02
Chr03	irgsp1_rep	CDS	33279116	33279263	.	+	1	Parent=Os03t0798300-02
Chr03	irgsp1_rep	CDS	33279365	33279562	.	+	0	Parent=Os03t0798300-02
Chr03	irgsp1_rep	CDS	33279648	33279926	.	+	0	Parent=Os03t0798300-02
Chr03	irgsp1_rep	CDS	33280026	33280187	.	+	0	Parent=Os03t0798300-02
Chr03	irgsp1_rep	CDS	33280286	33280504	.	+	0	Parent=Os03t0798300-02
Chr03	irgsp1_rep	CDS	33280895	33281026	.	+	0	Parent=Os03t0798300-02
Chr03	irgsp1_rep	three_prime_UTR	33281027	33281352	.	+	.	Parent=Os03t0798300-02
Chr03	irgsp1_rep	mRNA	33273313	33281555	.	+	.	ID=Os03t0798300-03;Name=Os03t0798300-03;Locus_id=Os03g0798300;RAP-DB Gene Symbol Synonym(s)=MET1A%2C OsMET1a;RAP-DB Gene Name Synonym(s)=METHYLTRANSFERASE 1A%2C DNA methyltransferase 1-1;CGSNL Gene Symbol=MET1A;CGSNL Gene Name=METHYLTRANSFERASE 1A;Oryzabase Gene Symbol Synonym(s)=OsMET1a%2C OsMET1-1%2C MET1a%2C MET1-1%2C OsMET1;Oryzabase Gene Name Synonym(s)=DNA methyltransferase 1-1;Note=DNA methyltransferase%2C Maintenance of CpG methylation after DNA replication;Transcript_evidence=AB362510;ORF_evidence=Q7Y1I7-1;GO=Biological Process: DNA methylation (GO:0006306),Biological Process: C-5 methylation of cytosine (GO:0090116),Molecular Function: DNA binding (GO:0003677),Molecular Function: Chromatin binding (GO:0003682),Molecular Function: DNA (cytosine-5-)-methyltransferase activity (GO:0003886),Molecular Function: methyltransferase activity (GO:0008168),Cellular Component: nucleus (GO:0005634);InterPro=C-5 cytosine methyltransferase (IPR001525),DNA (cytosine-5)-methyltransferase 1%2C eukaryote (IPR017198),DNA (cytosine-5)-methyltransferase 1%2C replication foci domain (IPR022702),Bromo adjacent homology (BAH) domain (IPR001025),S-adenosyl-L-methionine-dependent methyltransferase-like (IPR029063),DNA methylase%2C C-5 cytosine-specific%2C active site (IPR018117);Manual Curation=May 29%2C 2014;Literature_PMID=18281124;Oryzabase=8843
Chr03	irgsp1_rep	five_prime_UTR	33273313	33273449	.	+	.	Parent=Os03t0798300-03
Chr03	irgsp1_rep	five_prime_UTR	33273925	33273989	.	+	.	Parent=Os03t0798300-03
Chr03	irgsp1_rep	five_prime_UTR	33274623	33274629	.	+	.	Parent=Os03t0798300-03
Chr03	irgsp1_rep	CDS	33274630	33274663	.	+	0	Parent=Os03t0798300-03
Chr03	irgsp1_rep	CDS	33275073	33276534	.	+	2	Parent=Os03t0798300-03
Chr03	irgsp1_rep	CDS	33276782	33278261	.	+	1	Parent=Os03t0798300-03
Chr03	irgsp1_rep	CDS	33278372	33278536	.	+	0	Parent=Os03t0798300-03
Chr03	irgsp1_rep	CDS	33278646	33278838	.	+	0	Parent=Os03t0798300-03
Chr03	irgsp1_rep	CDS	33278916	33279027	.	+	2	Parent=Os03t0798300-03
Chr03	irgsp1_rep	CDS	33279116	33279263	.	+	1	Parent=Os03t0798300-03
Chr03	irgsp1_rep	CDS	33279365	33279562	.	+	0	Parent=Os03t0798300-03
Chr03	irgsp1_rep	CDS	33279648	33279926	.	+	0	Parent=Os03t0798300-03
Chr03	irgsp1_rep	CDS	33280026	33280187	.	+	0	Parent=Os03t0798300-03
Chr03	irgsp1_rep	CDS	33280286	33280504	.	+	0	Parent=Os03t0798300-03
Chr03	irgsp1_rep	CDS	33280895	33281026	.	+	0	Parent=Os03t0798300-03
Chr03	irgsp1_rep	three_prime_UTR	33281027	33281063	.	+	.	Parent=Os03t0798300-03
Chr03	irgsp1_rep	three_prime_UTR	33281355	33281555	.	+	.	Parent=Os03t0798300-03
Chr03	irgsp1_rep	mRNA	33273313	33281638	.	+	.	ID=Os03t0798300-04;Name=Os03t0798300-04;Locus_id=Os03g0798300;RAP-DB Gene Symbol Synonym(s)=MET1A%2C OsMET1a;RAP-DB Gene Name Synonym(s)=METHYLTRANSFERASE 1A%2C DNA methyltransferase 1-1;CGSNL Gene Symbol=MET1A;CGSNL Gene Name=METHYLTRANSFERASE 1A;Oryzabase Gene Symbol Synonym(s)=OsMET1a%2C OsMET1-1%2C MET1a%2C MET1-1%2C OsMET1;Oryzabase Gene Name Synonym(s)=DNA methyltransferase 1-1;Note=DNA methyltransferase%2C Maintenance of CpG methylation after DNA replication;Transcript_evidence=AB362510;ORF_evidence=Q7Y1I7-1;GO=Biological Process: DNA methylation (GO:0006306),Biological Process: C-5 methylation of cytosine (GO:0090116),Molecular Function: DNA binding (GO:0003677),Molecular Function: Chromatin binding (GO:0003682),Molecular Function: DNA (cytosine-5-)-methyltransferase activity (GO:0003886),Molecular Function: methyltransferase activity (GO:0008168),Cellular Component: nucleus (GO:0005634);InterPro=C-5 cytosine methyltransferase (IPR001525),DNA (cytosine-5)-methyltransferase 1%2C eukaryote (IPR017198),DNA (cytosine-5)-methyltransferase 1%2C replication foci domain (IPR022702),Bromo adjacent homology (BAH) domain (IPR001025),S-adenosyl-L-methionine-dependent methyltransferase-like (IPR029063),DNA methylase%2C C-5 cytosine-specific%2C active site (IPR018117);Manual Curation=May 29%2C 2014;Literature_PMID=18281124;Oryzabase=8843
Chr03	irgsp1_rep	five_prime_UTR	33273313	33273449	.	+	.	Parent=Os03t0798300-04
Chr03	irgsp1_rep	five_prime_UTR	33273925	33273989	.	+	.	Parent=Os03t0798300-04
Chr03	irgsp1_rep	five_prime_UTR	33274623	33274629	.	+	.	Parent=Os03t0798300-04
Chr03	irgsp1_rep	CDS	33274630	33274663	.	+	0	Parent=Os03t0798300-04
Chr03	irgsp1_rep	CDS	33275073	33276534	.	+	2	Parent=Os03t0798300-04
Chr03	irgsp1_rep	CDS	33276782	33278261	.	+	1	Parent=Os03t0798300-04
Chr03	irgsp1_rep	CDS	33278372	33278536	.	+	0	Parent=Os03t0798300-04
Chr03	irgsp1_rep	CDS	33278646	33278838	.	+	0	Parent=Os03t0798300-04
Chr03	irgsp1_rep	CDS	33278916	33279027	.	+	2	Parent=Os03t0798300-04
Chr03	irgsp1_rep	CDS	33279116	33279263	.	+	1	Parent=Os03t0798300-04
Chr03	irgsp1_rep	CDS	33279365	33279562	.	+	0	Parent=Os03t0798300-04
Chr03	irgsp1_rep	CDS	33279648	33279926	.	+	0	Parent=Os03t0798300-04
Chr03	irgsp1_rep	CDS	33280026	33280187	.	+	0	Parent=Os03t0798300-04
Chr03	irgsp1_rep	CDS	33280286	33280504	.	+	0	Parent=Os03t0798300-04
Chr03	irgsp1_rep	CDS	33280895	33281026	.	+	0	Parent=Os03t0798300-04
Chr03	irgsp1_rep	three_prime_UTR	33281027	33281063	.	+	.	Parent=Os03t0798300-04
Chr03	irgsp1_rep	three_prime_UTR	33281355	33281418	.	+	.	Parent=Os03t0798300-04
Chr03	irgsp1_rep	three_prime_UTR	33281593	33281638	.	+	.	Parent=Os03t0798300-04
Chr03	irgsp1_rep	mRNA	33281634	33282656	.	-	.	ID=Os03t0798400-01;Name=Os03t0798400-01;Locus_id=Os03g0798400;Note=Prenylated rab acceptor PRA1 family protein.;Transcript_evidence=AK109070 (DDBJ%2C Best hit);ORF_evidence=NP_001147211.1 (RefSeq);InterPro=Prenylated rab acceptor PRA1 (IPR004895);NIAS_FLcDNA=002-154-G02;Expression=AK109070;TENOR=Os03t0798400-01;KEGG=Os03t0798400-01
Chr03	irgsp1_rep	five_prime_UTR	33282564	33282656	.	-	.	Parent=Os03t0798400-01
Chr03	irgsp1_rep	CDS	33281871	33282563	.	-	0	Parent=Os03t0798400-01
Chr03	irgsp1_rep	three_prime_UTR	33281634	33281870	.	-	.	Parent=Os03t0798400-01
Chr03	irgsp1_rep	mRNA	33286651	33288551	.	+	.	ID=Os03t0798500-01;Name=Os03t0798500-01;Locus_id=Os03g0798500;RAP-DB Gene Symbol Synonym(s)=WRKY6%2C OsWRKY6;RAP-DB Gene Name Synonym(s)=WRKY GENE6%2C Rice WRKY gene6;CGSNL Gene Symbol=WRKY6;CGSNL Gene Name=WRKY GENE6;Oryzabase Gene Symbol Synonym(s)=OsWRKY6%2C WRKY-6%2C DLN103%2C OsDLN103;Oryzabase Gene Name Synonym(s)=Rice WRKY gene6%2C DLN repressor 103%2C DLN motif protein 103;Note=WRKY transcription factor%2C Positive regulation of defense responses;Transcript_evidence=BK005009;ORF_evidence=Q6IES5;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Zn-cluster domain (IPR018872),WRKY domain (IPR003657);Manual Curation=October 19%2C 2015;Literature_PMID=26083148,WRKY Working Group 2012. Rice 5:3.;Oryzabase=6574;TENOR=Os03t0798500-00
Chr03	irgsp1_rep	five_prime_UTR	33286651	33286931	.	+	.	Parent=Os03t0798500-01
Chr03	irgsp1_rep	CDS	33286932	33287779	.	+	0	Parent=Os03t0798500-01
Chr03	irgsp1_rep	CDS	33287860	33287985	.	+	1	Parent=Os03t0798500-01
Chr03	irgsp1_rep	CDS	33288315	33288483	.	+	1	Parent=Os03t0798500-01
Chr03	irgsp1_rep	three_prime_UTR	33288484	33288551	.	+	.	Parent=Os03t0798500-01
Chr03	irgsp1_rep	mRNA	33290841	33293309	.	-	.	ID=Os03t0798600-01;Name=Os03t0798600-01;Locus_id=Os03g0798600;Oryzabase Gene Name Synonym(s)=Ribosomal protein S15;Note=Similar to 40S ribosomal protein S15 (Fragment).;Transcript_evidence=AK121716 (DDBJ%2C Best hit);ORF_evidence=A6MZB5 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Cellular Component: small ribosomal subunit (GO:0015935),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S19/S15 (IPR002222),Ribosomal protein S19A/S15e (IPR005713),Ribosomal protein S19 conserved site (IPR020934),Ribosomal protein S19%2C superfamily (IPR023575);NIAS_FLcDNA=J033079G18;Oryzabase=17755;Expression=AK121716;TENOR=Os03t0798600-01;KEGG=Os03t0798600-01
Chr03	irgsp1_rep	five_prime_UTR	33293214	33293309	.	-	.	Parent=Os03t0798600-01
Chr03	irgsp1_rep	CDS	33293211	33293213	.	-	0	Parent=Os03t0798600-01
Chr03	irgsp1_rep	CDS	33292948	33293102	.	-	0	Parent=Os03t0798600-01
Chr03	irgsp1_rep	CDS	33292806	33292863	.	-	1	Parent=Os03t0798600-01
Chr03	irgsp1_rep	CDS	33291035	33291283	.	-	0	Parent=Os03t0798600-01
Chr03	irgsp1_rep	three_prime_UTR	33290841	33291034	.	-	.	Parent=Os03t0798600-01
Chr03	irgsp1_rep	mRNA	33304497	33305962	.	+	.	ID=Os03t0799000-01;Name=Os03t0799000-01;Locus_id=Os03g0799000;Note=Similar to Histone H1.;Transcript_evidence=AK067840 (DDBJ%2C Best hit),AK099211 (DDBJ%2C Best hit);ORF_evidence=B6TC95 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H1/H5 (IPR005818),Histone H5 (IPR005819),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=J013128M09,J013072E13;TENOR=Os03t0799000-01
Chr03	irgsp1_rep	five_prime_UTR	33304497	33304607	.	+	.	Parent=Os03t0799000-01
Chr03	irgsp1_rep	CDS	33304608	33304784	.	+	0	Parent=Os03t0799000-01
Chr03	irgsp1_rep	CDS	33304865	33305569	.	+	0	Parent=Os03t0799000-01
Chr03	irgsp1_rep	three_prime_UTR	33305570	33305962	.	+	.	Parent=Os03t0799000-01
Chr03	irgsp1_rep	mRNA	33304863	33305364	.	-	.	ID=Os03t0799050-00;Name=Os03t0799050-00;Locus_id=Os03g0799050;Note=Hypothetical protein.;Transcript_evidence=EU961904 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0799050-00
Chr03	irgsp1_rep	five_prime_UTR	33305363	33305364	.	-	.	Parent=Os03t0799050-00
Chr03	irgsp1_rep	CDS	33304863	33305362	.	-	0	Parent=Os03t0799050-00
Chr03	irgsp1_rep	mRNA	33310411	33314920	.	+	.	ID=Os03t0799100-01;Name=Os03t0799100-01;Locus_id=Os03g0799100;Oryzabase Gene Symbol Synonym(s)=BIP116;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 116%2C BRI1-interacting protein 116%2C brassinosteroid receptor kinase-interacting protein 116;Note=Similar to WAVE-DAMPENED2.;Transcript_evidence=AK102772 (DDBJ%2C Best hit),AK058959 (DDBJ%2C Best hit);ORF_evidence=Q10C08 (UniProt);InterPro=Xklp2 targeting protein (IPR009675);NIAS_FLcDNA=J033107G17,001-020-B08;Oryzabase=13697;TENOR=Os03t0799100-01
Chr03	irgsp1_rep	five_prime_UTR	33310411	33310670	.	+	.	Parent=Os03t0799100-01
Chr03	irgsp1_rep	CDS	33310671	33310750	.	+	0	Parent=Os03t0799100-01
Chr03	irgsp1_rep	CDS	33311914	33312340	.	+	1	Parent=Os03t0799100-01
Chr03	irgsp1_rep	CDS	33312771	33312856	.	+	0	Parent=Os03t0799100-01
Chr03	irgsp1_rep	CDS	33313200	33313293	.	+	1	Parent=Os03t0799100-01
Chr03	irgsp1_rep	CDS	33313421	33313492	.	+	0	Parent=Os03t0799100-01
Chr03	irgsp1_rep	CDS	33313904	33314014	.	+	0	Parent=Os03t0799100-01
Chr03	irgsp1_rep	CDS	33314387	33314596	.	+	0	Parent=Os03t0799100-01
Chr03	irgsp1_rep	three_prime_UTR	33314597	33314920	.	+	.	Parent=Os03t0799100-01
Chr03	irgsp1_rep	mRNA	33315831	33319606	.	+	.	ID=Os03t0799200-01;Name=Os03t0799200-01;Locus_id=Os03g0799200;Note=Protein of unknown function DUF593 family protein.;Transcript_evidence=AK067976 (DDBJ%2C Best hit);ORF_evidence=Q851Q1 (UniProt);InterPro=Protein of unknown function DUF593 (IPR007656);NIAS_FLcDNA=J013128O10;Expression=AK067976;TENOR=Os03t0799200-01;KEGG=Os03t0799200-01
Chr03	irgsp1_rep	five_prime_UTR	33315831	33316133	.	+	.	Parent=Os03t0799200-01
Chr03	irgsp1_rep	five_prime_UTR	33316636	33316679	.	+	.	Parent=Os03t0799200-01
Chr03	irgsp1_rep	CDS	33316680	33317646	.	+	0	Parent=Os03t0799200-01
Chr03	irgsp1_rep	CDS	33317746	33318962	.	+	2	Parent=Os03t0799200-01
Chr03	irgsp1_rep	three_prime_UTR	33318963	33318997	.	+	.	Parent=Os03t0799200-01
Chr03	irgsp1_rep	three_prime_UTR	33319393	33319606	.	+	.	Parent=Os03t0799200-01
Chr03	irgsp1_rep	mRNA	33316692	33318933	.	-	.	ID=Os03t0799250-00;Name=Os03t0799250-00;Locus_id=Os03g0799250;Note=Non-protein coding transcript.;Transcript_evidence=tplb0044i24 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os03t0799250-00
Chr03	irgsp1_rep	exon	33317807	33318933	.	-	.	Parent=Os03t0799250-00
Chr03	irgsp1_rep	exon	33317226	33317703	.	-	.	Parent=Os03t0799250-00
Chr03	irgsp1_rep	exon	33316692	33316951	.	-	.	Parent=Os03t0799250-00
Chr03	irgsp1_rep	mRNA	33320937	33321607	.	+	.	ID=Os03t0799300-01;Name=Os03t0799300-01;Locus_id=Os03g0799300;Note=Conserved hypothetical protein.;Transcript_evidence=AK108023 (DDBJ%2C Best hit);ORF_evidence=A2XMY9 (UniProt);NIAS_FLcDNA=002-136-A05;Expression=AK108023;TENOR=Os03t0799300-01;KEGG=Os03t0799300-01
Chr03	irgsp1_rep	five_prime_UTR	33320937	33321081	.	+	.	Parent=Os03t0799300-01
Chr03	irgsp1_rep	CDS	33321082	33321327	.	+	0	Parent=Os03t0799300-01
Chr03	irgsp1_rep	three_prime_UTR	33321328	33321607	.	+	.	Parent=Os03t0799300-01
Chr03	irgsp1_rep	mRNA	33324182	33324520	.	-	.	ID=Os03t0799400-00;Name=Os03t0799400-00;Locus_id=Os03g0799400;Note=Hypothetical conserved gene.;Transcript_evidence=AK362736 (DDBJ);ORF_evidence=Q851Q3 (UniProt);TENOR=Os03t0799400-00;KEGG=Os03t0799400-00
Chr03	irgsp1_rep	CDS	33324182	33324520	.	-	0	Parent=Os03t0799400-00
Chr03	irgsp1_rep	mRNA	33325003	33327125	.	+	.	ID=Os03t0799500-01;Name=Os03t0799500-01;Locus_id=Os03g0799500;Oryzabase Gene Symbol Synonym(s)=OsRTH3%2C RTH3;Oryzabase Gene Name Synonym(s)=Reversion-To-ethylene Sensitivity1 homologue 3;Note=Protein of unknown function DUF778 family protein.;Transcript_evidence=AK071709 (DDBJ%2C Best hit);ORF_evidence=D9J224 (UniProt);InterPro=Protein of unknown function DUF778 (IPR008496);NIAS_FLcDNA=J023110N04;Oryzabase=10413;Expression=AK071709;TENOR=Os03t0799500-01;KEGG=Os03t0799500-01
Chr03	irgsp1_rep	five_prime_UTR	33325003	33325186	.	+	.	Parent=Os03t0799500-01
Chr03	irgsp1_rep	five_prime_UTR	33326187	33326206	.	+	.	Parent=Os03t0799500-01
Chr03	irgsp1_rep	CDS	33326207	33326440	.	+	0	Parent=Os03t0799500-01
Chr03	irgsp1_rep	CDS	33326580	33326960	.	+	0	Parent=Os03t0799500-01
Chr03	irgsp1_rep	three_prime_UTR	33326961	33327125	.	+	.	Parent=Os03t0799500-01
Chr03	irgsp1_rep	mRNA	33328277	33333234	.	+	.	ID=Os03t0799600-01;Name=Os03t0799600-01;Locus_id=Os03g0799600;RAP-DB Gene Symbol Synonym(s)=OsSHL2;RAP-DB Gene Name Synonym(s)=SHORT LIFE 2;CGSNL Gene Symbol=SHL2;CGSNL Gene Name=SHORT LIFE 2;Oryzabase Gene Symbol Synonym(s)=OsSHL2;Oryzabase Gene Name Synonym(s)=SHL homolog 2;Note=Homolog of Arabidopsis SHL (SHORT LIFE)%2C BAH (Bromo adjacent homology) domain-containing protein;Transcript_evidence=AK072569;ORF_evidence=Q851Q5;GO=Molecular Function: Chromatin binding (GO:0003682);InterPro=Zinc finger%2C FYVE/PHD-type (IPR011011),Bromo adjacent homology (BAH) domain (IPR001025),Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C PHD-finger (IPR019787),Zinc finger%2C PHD-type%2C conserved site (IPR019786);NIAS_FLcDNA=J023128J04;Manual Curation=June 12%2C 2019;Literature_PMID=30082786;Oryzabase=22671;Expression=AK072569;TENOR=Os03t0799600-01;KEGG=Os03t0799600-01
Chr03	irgsp1_rep	five_prime_UTR	33328277	33328401	.	+	.	Parent=Os03t0799600-01
Chr03	irgsp1_rep	CDS	33328402	33328477	.	+	0	Parent=Os03t0799600-01
Chr03	irgsp1_rep	CDS	33330846	33331194	.	+	2	Parent=Os03t0799600-01
Chr03	irgsp1_rep	CDS	33331864	33331932	.	+	1	Parent=Os03t0799600-01
Chr03	irgsp1_rep	CDS	33332429	33332564	.	+	1	Parent=Os03t0799600-01
Chr03	irgsp1_rep	CDS	33332850	33332876	.	+	0	Parent=Os03t0799600-01
Chr03	irgsp1_rep	three_prime_UTR	33332877	33333234	.	+	.	Parent=Os03t0799600-01
Chr03	irgsp1_rep	mRNA	33328312	33333226	.	+	.	ID=Os03t0799600-02;Name=Os03t0799600-02;Locus_id=Os03g0799600;CGSNL Gene Symbol=SHL2;CGSNL Gene Name=SHORT LIFE 2;Oryzabase Gene Symbol Synonym(s)=OsSHL2;Oryzabase Gene Name Synonym(s)=SHL homolog 2;Note=Similar to ES43 like protein.;Transcript_evidence=AK104450 (DDBJ%2C Best hit);ORF_evidence=NP_001151899.1 (RefSeq);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Bromo adjacent homology (BAH) domain (IPR001025),Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-type%2C conserved site (IPR019786),Zinc finger%2C PHD-finger (IPR019787);NIAS_FLcDNA=006-212-B02;Oryzabase=22671;Expression=AK104450;TENOR=Os03t0799600-02;KEGG=Os03t0799600-02
Chr03	irgsp1_rep	five_prime_UTR	33328312	33328401	.	+	.	Parent=Os03t0799600-02
Chr03	irgsp1_rep	CDS	33328402	33328477	.	+	0	Parent=Os03t0799600-02
Chr03	irgsp1_rep	CDS	33330846	33331194	.	+	2	Parent=Os03t0799600-02
Chr03	irgsp1_rep	CDS	33331864	33331932	.	+	1	Parent=Os03t0799600-02
Chr03	irgsp1_rep	CDS	33332429	33332564	.	+	1	Parent=Os03t0799600-02
Chr03	irgsp1_rep	CDS	33332850	33332876	.	+	0	Parent=Os03t0799600-02
Chr03	irgsp1_rep	three_prime_UTR	33332877	33333226	.	+	.	Parent=Os03t0799600-02
Chr03	irgsp1_rep	mRNA	33334437	33338509	.	+	.	ID=Os03t0799700-01;Name=Os03t0799700-01;Locus_id=Os03g0799700;RAP-DB Gene Symbol Synonym(s)=TSV3%2C OsObgC2;RAP-DB Gene Name Synonym(s)=thermo-sensitive virescent 3;CGSNL Gene Symbol=TSV3;CGSNL Gene Name=THERMO-SENSITIVE VIRESCENT 3;Oryzabase Gene Symbol Synonym(s)=OsObgC2%2C ObgC2%2C TSV3/OsObgC2;Oryzabase Gene Name Synonym(s)=thermo-sensitive virescent 3%2C Spo0B-associated GTP-binding protein C2%2C Obg protein C2;Note=Obg subfamily of small GTP-binding protein%2C Chloroplast development at the early leaf stage under cold stress;Transcript_evidence=AK109922;ORF_evidence=Q851Q6;GO=Molecular Function: GTP binding (GO:0005525);InterPro=GTP1/OBG domain superfamily (IPR036726),P-loop containing nucleoside triphosphate hydrolase (IPR027417),GTP-binding protein%2C Obg-type (IPR035101),GTP1/OBG domain (IPR006169),GTP binding domain (IPR006073),OBG-type guanine nucleotide-binding (G) domain (IPR031167),Small GTP-binding protein domain (IPR005225),GTP1/OBG%2C conserved site (IPR006074);NIAS_FLcDNA=002-151-B12;Manual Curation=October 5%2C 2018;Literature_PMID=29162684;Oryzabase=22161;Expression=AK109922;TENOR=Os03t0799700-01;KEGG=Os03t0799700-01;Subcellular location=chloroplast (GO:0009507)
Chr03	irgsp1_rep	five_prime_UTR	33334437	33334475	.	+	.	Parent=Os03t0799700-01
Chr03	irgsp1_rep	CDS	33334476	33335067	.	+	0	Parent=Os03t0799700-01
Chr03	irgsp1_rep	CDS	33335162	33335253	.	+	2	Parent=Os03t0799700-01
Chr03	irgsp1_rep	CDS	33335896	33335979	.	+	0	Parent=Os03t0799700-01
Chr03	irgsp1_rep	CDS	33336540	33336617	.	+	0	Parent=Os03t0799700-01
Chr03	irgsp1_rep	CDS	33336914	33337114	.	+	0	Parent=Os03t0799700-01
Chr03	irgsp1_rep	CDS	33337235	33337342	.	+	0	Parent=Os03t0799700-01
Chr03	irgsp1_rep	CDS	33337559	33337633	.	+	0	Parent=Os03t0799700-01
Chr03	irgsp1_rep	CDS	33337752	33337951	.	+	0	Parent=Os03t0799700-01
Chr03	irgsp1_rep	CDS	33338068	33338152	.	+	1	Parent=Os03t0799700-01
Chr03	irgsp1_rep	three_prime_UTR	33338153	33338509	.	+	.	Parent=Os03t0799700-01
Chr03	irgsp1_rep	mRNA	33338894	33339732	.	+	.	ID=Os03t0799801-00;Name=Os03t0799801-00;Locus_id=Os03g0799801;Note=Hypothetical conserved gene.;Transcript_evidence=CT835268 (DDBJ%2C Best hit);ORF_evidence=NP_001051592.1 (RefSeq);TENOR=Os03t0799801-00;KEGG=Os03t0799801-00
Chr03	irgsp1_rep	five_prime_UTR	33338894	33338895	.	+	.	Parent=Os03t0799801-00
Chr03	irgsp1_rep	CDS	33338896	33339255	.	+	0	Parent=Os03t0799801-00
Chr03	irgsp1_rep	three_prime_UTR	33339256	33339732	.	+	.	Parent=Os03t0799801-00
Chr03	irgsp1_rep	mRNA	33346315	33349947	.	+	.	ID=Os03t0799900-01;Name=Os03t0799900-01;Locus_id=Os03g0799900;CGSNL Gene Symbol=PHF1L;CGSNL Gene Name=PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR 1-LIKE;Oryzabase Gene Symbol Synonym(s)=OsPHF1L%2C OsWD40-94;Oryzabase Gene Name Synonym(s)=PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR1-LIKE;Note=Similar to sec12-like protein 1.;Transcript_evidence=AK111711 (DDBJ%2C Best hit);ORF_evidence=NP_001148204.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J023024A21;Oryzabase=9625;TENOR=Os03t0799900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	33346315	33346494	.	+	.	Parent=Os03t0799900-01
Chr03	irgsp1_rep	CDS	33346495	33346674	.	+	0	Parent=Os03t0799900-01
Chr03	irgsp1_rep	CDS	33346795	33346895	.	+	0	Parent=Os03t0799900-01
Chr03	irgsp1_rep	CDS	33347079	33347211	.	+	1	Parent=Os03t0799900-01
Chr03	irgsp1_rep	CDS	33347350	33347441	.	+	0	Parent=Os03t0799900-01
Chr03	irgsp1_rep	CDS	33347723	33347822	.	+	1	Parent=Os03t0799900-01
Chr03	irgsp1_rep	CDS	33347919	33347991	.	+	0	Parent=Os03t0799900-01
Chr03	irgsp1_rep	CDS	33348073	33348197	.	+	2	Parent=Os03t0799900-01
Chr03	irgsp1_rep	three_prime_UTR	33348198	33349627	.	+	.	Parent=Os03t0799900-01
Chr03	irgsp1_rep	three_prime_UTR	33349702	33349947	.	+	.	Parent=Os03t0799900-01
Chr03	irgsp1_rep	mRNA	33360063	33362150	.	+	.	ID=Os03t0800000-01;Name=Os03t0800000-01;Locus_id=Os03g0800000;Note=Similar to Nitrate and chloride transporter.;Transcript_evidence=AK068267 (DDBJ%2C Best hit);ORF_evidence=NP_001152028.1 (RefSeq);InterPro=Nodulin-like (IPR010658),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J013149D11;Expression=AK068267;TENOR=Os03t0800000-01;KEGG=Os03t0800000-01
Chr03	irgsp1_rep	five_prime_UTR	33360063	33360107	.	+	.	Parent=Os03t0800000-01
Chr03	irgsp1_rep	CDS	33360108	33360121	.	+	0	Parent=Os03t0800000-01
Chr03	irgsp1_rep	CDS	33360848	33362015	.	+	1	Parent=Os03t0800000-01
Chr03	irgsp1_rep	three_prime_UTR	33362016	33362150	.	+	.	Parent=Os03t0800000-01
Chr03	irgsp1_rep	mRNA	33360063	33362370	.	+	.	ID=Os03t0800000-02;Name=Os03t0800000-02;Locus_id=Os03g0800000;Note=Similar to nitrate and chloride transporter.;Transcript_evidence=AK064790 (DDBJ%2C Best hit);ORF_evidence=NP_001152028.1 (RefSeq);InterPro=Nodulin-like (IPR010658),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J013000C06;Expression=AK064790;TENOR=Os03t0800000-02;KEGG=Os03t0800000-02
Chr03	irgsp1_rep	five_prime_UTR	33360063	33360128	.	+	.	Parent=Os03t0800000-02
Chr03	irgsp1_rep	CDS	33360129	33362015	.	+	0	Parent=Os03t0800000-02
Chr03	irgsp1_rep	three_prime_UTR	33362016	33362370	.	+	.	Parent=Os03t0800000-02
Chr03	irgsp1_rep	mRNA	33363977	33370397	.	-	.	ID=Os03t0800050-00;Name=Os03t0800050-00;Locus_id=Os03g0800050;Note=Hypothetical protein.;Transcript_evidence=tplb0041d21 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0800050-00
Chr03	irgsp1_rep	five_prime_UTR	33370150	33370397	.	-	.	Parent=Os03t0800050-00
Chr03	irgsp1_rep	five_prime_UTR	33369794	33370065	.	-	.	Parent=Os03t0800050-00
Chr03	irgsp1_rep	five_prime_UTR	33369112	33369269	.	-	.	Parent=Os03t0800050-00
Chr03	irgsp1_rep	five_prime_UTR	33368411	33368515	.	-	.	Parent=Os03t0800050-00
Chr03	irgsp1_rep	CDS	33368385	33368410	.	-	0	Parent=Os03t0800050-00
Chr03	irgsp1_rep	CDS	33368089	33368279	.	-	1	Parent=Os03t0800050-00
Chr03	irgsp1_rep	CDS	33367598	33367797	.	-	2	Parent=Os03t0800050-00
Chr03	irgsp1_rep	three_prime_UTR	33367532	33367597	.	-	.	Parent=Os03t0800050-00
Chr03	irgsp1_rep	three_prime_UTR	33366995	33367110	.	-	.	Parent=Os03t0800050-00
Chr03	irgsp1_rep	three_prime_UTR	33366317	33366443	.	-	.	Parent=Os03t0800050-00
Chr03	irgsp1_rep	three_prime_UTR	33366163	33366224	.	-	.	Parent=Os03t0800050-00
Chr03	irgsp1_rep	three_prime_UTR	33365998	33366069	.	-	.	Parent=Os03t0800050-00
Chr03	irgsp1_rep	three_prime_UTR	33365360	33365470	.	-	.	Parent=Os03t0800050-00
Chr03	irgsp1_rep	three_prime_UTR	33364425	33364507	.	-	.	Parent=Os03t0800050-00
Chr03	irgsp1_rep	three_prime_UTR	33363977	33364319	.	-	.	Parent=Os03t0800050-00
Chr03	irgsp1_rep	mRNA	33363986	33370563	.	+	.	ID=Os03t0800100-01;Name=Os03t0800100-01;Locus_id=Os03g0800100;Note=Cactin%2C domain domain containing protein.;Transcript_evidence=AK063420 (DDBJ%2C Best hit);ORF_evidence=Q851R1 (UniProt);InterPro=Cactin%2C domain (IPR018816);NIAS_FLcDNA=001-115-C03;TENOR=Os03t0800100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	33363986	33364012	.	+	.	Parent=Os03t0800100-01
Chr03	irgsp1_rep	CDS	33364013	33364321	.	+	0	Parent=Os03t0800100-01
Chr03	irgsp1_rep	CDS	33364427	33364518	.	+	0	Parent=Os03t0800100-01
Chr03	irgsp1_rep	CDS	33365375	33365471	.	+	1	Parent=Os03t0800100-01
Chr03	irgsp1_rep	CDS	33365999	33366070	.	+	0	Parent=Os03t0800100-01
Chr03	irgsp1_rep	CDS	33366164	33366226	.	+	0	Parent=Os03t0800100-01
Chr03	irgsp1_rep	CDS	33366319	33366459	.	+	0	Parent=Os03t0800100-01
Chr03	irgsp1_rep	CDS	33367017	33367112	.	+	0	Parent=Os03t0800100-01
Chr03	irgsp1_rep	CDS	33367534	33367772	.	+	0	Parent=Os03t0800100-01
Chr03	irgsp1_rep	CDS	33369858	33369870	.	+	1	Parent=Os03t0800100-01
Chr03	irgsp1_rep	three_prime_UTR	33369871	33370066	.	+	.	Parent=Os03t0800100-01
Chr03	irgsp1_rep	three_prime_UTR	33370151	33370563	.	+	.	Parent=Os03t0800100-01
Chr03	irgsp1_rep	mRNA	33371357	33380303	.	-	.	ID=Os03t0800200-01;Name=Os03t0800200-01;Locus_id=Os03g0800200;RAP-DB Gene Symbol Synonym(s)=MEL1%2C mel1%2C OsMEL1%2C MEAL1%2C OsMEAL1;RAP-DB Gene Name Synonym(s)=MEIOSIS ARRESTED AT LEPTOTENE 1%2C MEIOSIS ARRESTED AT LEPTOTENE1%2C Protein argonaute MEL1%2C Protein MEIOSIS ARRESTED AT LEPTOTENE 1;CGSNL Gene Symbol=MEL1;CGSNL Gene Name=MEIOSIS ARRESTED AT LEPTOTENE 1;Oryzabase Gene Symbol Synonym(s)=mel1%2C OsMEL1%2C MEAL1%2C OsMEAL1%2C OsAGO5c;Oryzabase Gene Name Synonym(s)=MEIOSIS ARRESTED AT LEPTOTENE1%2C Protein argonaute MEL1%2C Protein MEIOSIS ARRESTED AT LEPTOTENE 1;Note=ARGONAUTE (AGO) family protein%2C Development of pre-meiotic germ cells%2C Progression of meiosis;Transcript_evidence=AB297928;ORF_evidence=Q851R2;GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515);InterPro=Domain of unknown function DUF1785 (IPR014811),PAZ domain (IPR003100),Ribonuclease H-like domain (IPR012337),Stem cell self-renewal protein Piwi (IPR003165);Manual Curation=January 28%2C 2015;Literature_PMID=17675402,24635777;Oryzabase=7363;TENOR=Os03t0800200-00
Chr03	irgsp1_rep	five_prime_UTR	33380233	33380303	.	-	.	Parent=Os03t0800200-01
Chr03	irgsp1_rep	CDS	33379537	33380232	.	-	0	Parent=Os03t0800200-01
Chr03	irgsp1_rep	CDS	33377049	33377254	.	-	0	Parent=Os03t0800200-01
Chr03	irgsp1_rep	CDS	33376811	33376960	.	-	1	Parent=Os03t0800200-01
Chr03	irgsp1_rep	CDS	33376586	33376719	.	-	1	Parent=Os03t0800200-01
Chr03	irgsp1_rep	CDS	33376386	33376495	.	-	2	Parent=Os03t0800200-01
Chr03	irgsp1_rep	CDS	33376208	33376314	.	-	0	Parent=Os03t0800200-01
Chr03	irgsp1_rep	CDS	33375645	33375783	.	-	1	Parent=Os03t0800200-01
Chr03	irgsp1_rep	CDS	33375450	33375566	.	-	0	Parent=Os03t0800200-01
Chr03	irgsp1_rep	CDS	33375150	33375257	.	-	0	Parent=Os03t0800200-01
Chr03	irgsp1_rep	CDS	33374994	33375065	.	-	0	Parent=Os03t0800200-01
Chr03	irgsp1_rep	CDS	33374608	33374727	.	-	0	Parent=Os03t0800200-01
Chr03	irgsp1_rep	CDS	33374361	33374526	.	-	0	Parent=Os03t0800200-01
Chr03	irgsp1_rep	CDS	33374161	33374282	.	-	2	Parent=Os03t0800200-01
Chr03	irgsp1_rep	CDS	33373901	33374041	.	-	0	Parent=Os03t0800200-01
Chr03	irgsp1_rep	CDS	33373574	33373713	.	-	0	Parent=Os03t0800200-01
Chr03	irgsp1_rep	CDS	33373431	33373493	.	-	1	Parent=Os03t0800200-01
Chr03	irgsp1_rep	CDS	33373288	33373351	.	-	1	Parent=Os03t0800200-01
Chr03	irgsp1_rep	CDS	33373057	33373192	.	-	0	Parent=Os03t0800200-01
Chr03	irgsp1_rep	CDS	33372880	33372953	.	-	2	Parent=Os03t0800200-01
Chr03	irgsp1_rep	CDS	33372689	33372783	.	-	0	Parent=Os03t0800200-01
Chr03	irgsp1_rep	CDS	33372563	33372594	.	-	1	Parent=Os03t0800200-01
Chr03	irgsp1_rep	CDS	33371545	33371729	.	-	2	Parent=Os03t0800200-01
Chr03	irgsp1_rep	three_prime_UTR	33371357	33371544	.	-	.	Parent=Os03t0800200-01
Chr03	irgsp1_rep	mRNA	33371523	33373201	.	+	.	ID=Os03t0800300-00;Name=Os03t0800300-00;Locus_id=Os03g0800300;Note=Non-protein coding transcript.;Transcript_evidence=BT016774 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0800300-00
Chr03	irgsp1_rep	exon	33371523	33371723	.	+	.	Parent=Os03t0800300-00
Chr03	irgsp1_rep	exon	33372649	33372766	.	+	.	Parent=Os03t0800300-00
Chr03	irgsp1_rep	exon	33372868	33372949	.	+	.	Parent=Os03t0800300-00
Chr03	irgsp1_rep	exon	33373049	33373201	.	+	.	Parent=Os03t0800300-00
Chr03	irgsp1_rep	mRNA	33385135	33387239	.	-	.	ID=Os03t0800400-01;Name=Os03t0800400-01;Locus_id=Os03g0800400;Note=Protein of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK071430 (DDBJ%2C Best hit);ORF_evidence=Q851R3 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=J023097A10;Expression=AK071430;TENOR=Os03t0800400-01;KEGG=Os03t0800400-01
Chr03	irgsp1_rep	five_prime_UTR	33387115	33387239	.	-	.	Parent=Os03t0800400-01
Chr03	irgsp1_rep	CDS	33385783	33387114	.	-	0	Parent=Os03t0800400-01
Chr03	irgsp1_rep	three_prime_UTR	33385771	33385782	.	-	.	Parent=Os03t0800400-01
Chr03	irgsp1_rep	three_prime_UTR	33385135	33385543	.	-	.	Parent=Os03t0800400-01
Chr03	irgsp1_rep	mRNA	33388173	33391034	.	-	.	ID=Os03t0800500-01;Name=Os03t0800500-01;Locus_id=Os03g0800500;Note=Putative small multi-drug export family protein.;Transcript_evidence=AK061104 (DDBJ%2C Best hit);ORF_evidence=NP_001148347.1 (RefSeq);InterPro=Putative small multi-drug export (IPR009577);NIAS_FLcDNA=006-207-B07;Expression=AK061104;TENOR=Os03t0800500-01;KEGG=Os03t0800500-01
Chr03	irgsp1_rep	five_prime_UTR	33390957	33391034	.	-	.	Parent=Os03t0800500-01
Chr03	irgsp1_rep	CDS	33390400	33390956	.	-	0	Parent=Os03t0800500-01
Chr03	irgsp1_rep	CDS	33388229	33388640	.	-	1	Parent=Os03t0800500-01
Chr03	irgsp1_rep	three_prime_UTR	33388173	33388228	.	-	.	Parent=Os03t0800500-01
Chr03	irgsp1_rep	mRNA	33388104	33391000	.	-	.	ID=Os03t0800500-02;Name=Os03t0800500-02;Locus_id=Os03g0800500;Note=Putative small multi-drug export family protein.;Transcript_evidence=AK070229 (DDBJ%2C Best hit);ORF_evidence=NP_001148347.1 (RefSeq);InterPro=Putative small multi-drug export (IPR009577);NIAS_FLcDNA=J023042L23;Expression=AK070229;TENOR=Os03t0800500-02;KEGG=Os03t0800500-02
Chr03	irgsp1_rep	five_prime_UTR	33390957	33391000	.	-	.	Parent=Os03t0800500-02
Chr03	irgsp1_rep	CDS	33390400	33390956	.	-	0	Parent=Os03t0800500-02
Chr03	irgsp1_rep	CDS	33388229	33388640	.	-	1	Parent=Os03t0800500-02
Chr03	irgsp1_rep	three_prime_UTR	33388104	33388228	.	-	.	Parent=Os03t0800500-02
Chr03	irgsp1_rep	mRNA	33391465	33393588	.	-	.	ID=Os03t0800700-01;Name=Os03t0800700-01;Locus_id=Os03g0800700;CGSNL Gene Symbol=TRXH4;CGSNL Gene Name=THIOREDOXIN H-TYPE 4;Oryzabase Gene Symbol Synonym(s)=OsTRXh4%2C OsTrx10%2C Os3%2C OsTrxh3;Oryzabase Gene Name Synonym(s)=Thioredoxin H-type 4%2C H-type Thioredoxin 4%2C Thioredoxin 10%2C thioredoxin h3;Note=Similar to Thioredoxin H-type 5 (TRX-H-5).;Transcript_evidence=AK062383 (DDBJ%2C Best hit);ORF_evidence=B8ALD1 (UniProt);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Thioredoxin (IPR005746),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766),Thioredoxin%2C conserved site (IPR017937);NIAS_FLcDNA=001-102-B11;Oryzabase=9907;Expression=AK062383;TENOR=Os03t0800700-01;KEGG=Os03t0800700-01
Chr03	irgsp1_rep	five_prime_UTR	33393482	33393588	.	-	.	Parent=Os03t0800700-01
Chr03	irgsp1_rep	CDS	33393344	33393481	.	-	0	Parent=Os03t0800700-01
Chr03	irgsp1_rep	CDS	33393118	33393240	.	-	0	Parent=Os03t0800700-01
Chr03	irgsp1_rep	CDS	33391653	33391796	.	-	0	Parent=Os03t0800700-01
Chr03	irgsp1_rep	three_prime_UTR	33391465	33391652	.	-	.	Parent=Os03t0800700-01
Chr03	irgsp1_rep	mRNA	33394172	33402259	.	-	.	ID=Os03t0800800-01;Name=Os03t0800800-01;Locus_id=Os03g0800800;Note=Forkhead-associated domain containing protein.;Transcript_evidence=AK065406 (DDBJ%2C Best hit);ORF_evidence=NP_001147954.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Forkhead-associated (FHA) domain (IPR000253),SMAD/FHA domain (IPR008984);NIAS_FLcDNA=J013020B01;Expression=AK065406;TENOR=Os03t0800800-01;KEGG=Os03t0800800-01
Chr03	irgsp1_rep	five_prime_UTR	33402197	33402259	.	-	.	Parent=Os03t0800800-01
Chr03	irgsp1_rep	CDS	33402119	33402196	.	-	0	Parent=Os03t0800800-01
Chr03	irgsp1_rep	CDS	33399010	33400998	.	-	0	Parent=Os03t0800800-01
Chr03	irgsp1_rep	CDS	33398881	33398935	.	-	0	Parent=Os03t0800800-01
Chr03	irgsp1_rep	CDS	33397241	33397389	.	-	2	Parent=Os03t0800800-01
Chr03	irgsp1_rep	CDS	33396873	33396959	.	-	0	Parent=Os03t0800800-01
Chr03	irgsp1_rep	CDS	33395739	33395867	.	-	0	Parent=Os03t0800800-01
Chr03	irgsp1_rep	CDS	33394580	33394663	.	-	0	Parent=Os03t0800800-01
Chr03	irgsp1_rep	three_prime_UTR	33394172	33394579	.	-	.	Parent=Os03t0800800-01
Chr03	irgsp1_rep	mRNA	33402553	33405435	.	+	.	ID=Os03t0800900-01;Name=Os03t0800900-01;Locus_id=Os03g0800900;Note=Hypothetical conserved gene.;Transcript_evidence=AK241533 (DDBJ%2C Best hit);ORF_evidence=Q851R7 (UniProt);NIAS_FLcDNA=J065172F14;TENOR=Os03t0800900-01;KEGG=Os03t0800900-01
Chr03	irgsp1_rep	five_prime_UTR	33402553	33402668	.	+	.	Parent=Os03t0800900-01
Chr03	irgsp1_rep	CDS	33402669	33402728	.	+	0	Parent=Os03t0800900-01
Chr03	irgsp1_rep	CDS	33402864	33403062	.	+	0	Parent=Os03t0800900-01
Chr03	irgsp1_rep	CDS	33403940	33403980	.	+	2	Parent=Os03t0800900-01
Chr03	irgsp1_rep	three_prime_UTR	33403981	33404008	.	+	.	Parent=Os03t0800900-01
Chr03	irgsp1_rep	three_prime_UTR	33404109	33404171	.	+	.	Parent=Os03t0800900-01
Chr03	irgsp1_rep	three_prime_UTR	33404260	33404358	.	+	.	Parent=Os03t0800900-01
Chr03	irgsp1_rep	three_prime_UTR	33404434	33404501	.	+	.	Parent=Os03t0800900-01
Chr03	irgsp1_rep	three_prime_UTR	33404582	33404894	.	+	.	Parent=Os03t0800900-01
Chr03	irgsp1_rep	three_prime_UTR	33405201	33405435	.	+	.	Parent=Os03t0800900-01
Chr03	irgsp1_rep	mRNA	33406495	33407287	.	+	.	ID=Os03t0801000-01;Name=Os03t0801000-01;Locus_id=Os03g0801000;Note=Conserved hypothetical protein.;Transcript_evidence=AK111357 (DDBJ%2C Best hit);ORF_evidence=Q6YXA4 (UniProt);NIAS_FLcDNA=002-181-H02;Expression=AK111357;TENOR=Os03t0801000-01;KEGG=Os03t0801000-01
Chr03	irgsp1_rep	five_prime_UTR	33406495	33406706	.	+	.	Parent=Os03t0801000-01
Chr03	irgsp1_rep	five_prime_UTR	33406813	33406842	.	+	.	Parent=Os03t0801000-01
Chr03	irgsp1_rep	CDS	33406843	33407004	.	+	0	Parent=Os03t0801000-01
Chr03	irgsp1_rep	three_prime_UTR	33407005	33407287	.	+	.	Parent=Os03t0801000-01
Chr03	irgsp1_rep	mRNA	33418307	33419324	.	-	.	ID=Os03t0801300-01;Name=Os03t0801300-01;Locus_id=Os03g0801300;Note=Similar to H0219H12.9 protein.;Transcript_evidence=AK241187 (DDBJ%2C Best hit);ORF_evidence=Q01II8 (UniProt);NIAS_FLcDNA=J065120H19;TENOR=Os03t0801300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	33418576	33419324	.	-	.	Parent=Os03t0801300-01
Chr03	irgsp1_rep	CDS	33418447	33418575	.	-	0	Parent=Os03t0801300-01
Chr03	irgsp1_rep	three_prime_UTR	33418307	33418446	.	-	.	Parent=Os03t0801300-01
Chr03	irgsp1_rep	mRNA	33421660	33422747	.	+	.	ID=Os03t0801500-01;Name=Os03t0801500-01;Locus_id=Os03g0801500;Note=Conserved hypothetical protein.;Transcript_evidence=AK122059 (DDBJ%2C Best hit);ORF_evidence=B8ALT9 (UniProt);NIAS_FLcDNA=J033115B08;Expression=AK122059;TENOR=Os03t0801500-01;KEGG=Os03t0801500-01
Chr03	irgsp1_rep	five_prime_UTR	33421660	33421679	.	+	.	Parent=Os03t0801500-01
Chr03	irgsp1_rep	CDS	33421680	33421895	.	+	0	Parent=Os03t0801500-01
Chr03	irgsp1_rep	CDS	33422203	33422354	.	+	0	Parent=Os03t0801500-01
Chr03	irgsp1_rep	CDS	33422555	33422639	.	+	1	Parent=Os03t0801500-01
Chr03	irgsp1_rep	three_prime_UTR	33422640	33422747	.	+	.	Parent=Os03t0801500-01
Chr03	irgsp1_rep	mRNA	33424913	33433067	.	+	.	ID=Os03t0801600-01;Name=Os03t0801600-01;Locus_id=Os03g0801600;Oryzabase Gene Name Synonym(s)=Vacuolar protein sorting-associated protein35 family protein%2C Vacuolar protein sorting-associated protein 35 family protein;Note=Similar to vacuolar protein sorting 35.;Transcript_evidence=AK069591 (DDBJ%2C Best hit);ORF_evidence=NP_001151633.1 (RefSeq);InterPro=Vacuolar protein sorting-associated protein 35 (IPR005378);NIAS_FLcDNA=J023023M08;Oryzabase=20525;TENOR=Os03t0801600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	33424913	33424914	.	+	.	Parent=Os03t0801600-01
Chr03	irgsp1_rep	CDS	33424915	33425214	.	+	0	Parent=Os03t0801600-01
Chr03	irgsp1_rep	CDS	33425300	33425396	.	+	0	Parent=Os03t0801600-01
Chr03	irgsp1_rep	CDS	33425492	33425618	.	+	2	Parent=Os03t0801600-01
Chr03	irgsp1_rep	CDS	33426367	33426552	.	+	1	Parent=Os03t0801600-01
Chr03	irgsp1_rep	CDS	33427116	33427203	.	+	1	Parent=Os03t0801600-01
Chr03	irgsp1_rep	CDS	33427442	33427498	.	+	0	Parent=Os03t0801600-01
Chr03	irgsp1_rep	CDS	33427585	33427674	.	+	0	Parent=Os03t0801600-01
Chr03	irgsp1_rep	CDS	33427753	33427875	.	+	0	Parent=Os03t0801600-01
Chr03	irgsp1_rep	CDS	33428438	33428512	.	+	0	Parent=Os03t0801600-01
Chr03	irgsp1_rep	CDS	33428583	33428642	.	+	0	Parent=Os03t0801600-01
Chr03	irgsp1_rep	CDS	33428878	33428994	.	+	0	Parent=Os03t0801600-01
Chr03	irgsp1_rep	CDS	33429268	33429507	.	+	0	Parent=Os03t0801600-01
Chr03	irgsp1_rep	CDS	33429595	33429660	.	+	0	Parent=Os03t0801600-01
Chr03	irgsp1_rep	CDS	33429784	33429873	.	+	0	Parent=Os03t0801600-01
Chr03	irgsp1_rep	CDS	33430328	33430417	.	+	0	Parent=Os03t0801600-01
Chr03	irgsp1_rep	CDS	33430723	33430812	.	+	0	Parent=Os03t0801600-01
Chr03	irgsp1_rep	CDS	33431116	33431184	.	+	0	Parent=Os03t0801600-01
Chr03	irgsp1_rep	CDS	33431255	33431335	.	+	0	Parent=Os03t0801600-01
Chr03	irgsp1_rep	CDS	33431522	33431629	.	+	0	Parent=Os03t0801600-01
Chr03	irgsp1_rep	CDS	33431750	33431853	.	+	0	Parent=Os03t0801600-01
Chr03	irgsp1_rep	CDS	33432236	33432349	.	+	1	Parent=Os03t0801600-01
Chr03	irgsp1_rep	CDS	33432432	33432645	.	+	1	Parent=Os03t0801600-01
Chr03	irgsp1_rep	three_prime_UTR	33432646	33433067	.	+	.	Parent=Os03t0801600-01
Chr03	irgsp1_rep	mRNA	33424982	33433055	.	+	.	ID=Os03t0801600-02;Name=Os03t0801600-02;Locus_id=Os03g0801600;Oryzabase Gene Name Synonym(s)=Vacuolar protein sorting-associated protein35 family protein%2C Vacuolar protein sorting-associated protein 35 family protein;Note=Similar to vacuolar protein sorting 35.;Transcript_evidence=AK099884 (DDBJ%2C Best hit);ORF_evidence=NP_001151633.1 (RefSeq);InterPro=Vacuolar protein sorting-associated protein 35 (IPR005378);NIAS_FLcDNA=J013111P21;Oryzabase=20525;TENOR=Os03t0801600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	33424982	33424983	.	+	.	Parent=Os03t0801600-02
Chr03	irgsp1_rep	CDS	33424984	33425214	.	+	0	Parent=Os03t0801600-02
Chr03	irgsp1_rep	CDS	33425300	33425396	.	+	0	Parent=Os03t0801600-02
Chr03	irgsp1_rep	CDS	33425492	33425618	.	+	2	Parent=Os03t0801600-02
Chr03	irgsp1_rep	CDS	33426367	33426552	.	+	1	Parent=Os03t0801600-02
Chr03	irgsp1_rep	CDS	33427116	33427203	.	+	1	Parent=Os03t0801600-02
Chr03	irgsp1_rep	CDS	33427442	33427498	.	+	0	Parent=Os03t0801600-02
Chr03	irgsp1_rep	CDS	33427585	33427674	.	+	0	Parent=Os03t0801600-02
Chr03	irgsp1_rep	CDS	33427753	33427875	.	+	0	Parent=Os03t0801600-02
Chr03	irgsp1_rep	CDS	33428438	33428512	.	+	0	Parent=Os03t0801600-02
Chr03	irgsp1_rep	CDS	33428583	33428642	.	+	0	Parent=Os03t0801600-02
Chr03	irgsp1_rep	CDS	33428878	33428994	.	+	0	Parent=Os03t0801600-02
Chr03	irgsp1_rep	CDS	33429268	33429507	.	+	0	Parent=Os03t0801600-02
Chr03	irgsp1_rep	CDS	33429595	33429660	.	+	0	Parent=Os03t0801600-02
Chr03	irgsp1_rep	CDS	33429784	33429873	.	+	0	Parent=Os03t0801600-02
Chr03	irgsp1_rep	CDS	33430328	33430417	.	+	0	Parent=Os03t0801600-02
Chr03	irgsp1_rep	CDS	33430723	33430812	.	+	0	Parent=Os03t0801600-02
Chr03	irgsp1_rep	CDS	33431116	33431184	.	+	0	Parent=Os03t0801600-02
Chr03	irgsp1_rep	CDS	33431255	33431335	.	+	0	Parent=Os03t0801600-02
Chr03	irgsp1_rep	CDS	33431522	33431629	.	+	0	Parent=Os03t0801600-02
Chr03	irgsp1_rep	CDS	33431750	33431853	.	+	0	Parent=Os03t0801600-02
Chr03	irgsp1_rep	CDS	33432236	33432349	.	+	1	Parent=Os03t0801600-02
Chr03	irgsp1_rep	CDS	33432432	33432645	.	+	1	Parent=Os03t0801600-02
Chr03	irgsp1_rep	three_prime_UTR	33432646	33433055	.	+	.	Parent=Os03t0801600-02
Chr03	irgsp1_rep	mRNA	33433385	33436696	.	-	.	ID=Os03t0801700-01;Name=Os03t0801700-01;Locus_id=Os03g0801700;Note=Rossmann-like alpha/beta/alpha sandwich fold domain containing protein.;Transcript_evidence=AK069505 (DDBJ%2C Best hit);ORF_evidence=NP_001151161.1 (RefSeq);GO=Biological Process: riboflavin biosynthetic process (GO:0009231),Molecular Function: FMN adenylyltransferase activity (GO:0003919);InterPro=Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),FAD synthetase (IPR015864);NIAS_FLcDNA=J023019K20;Expression=AK069505;TENOR=Os03t0801700-01;KEGG=Os03t0801700-01
Chr03	irgsp1_rep	five_prime_UTR	33436575	33436696	.	-	.	Parent=Os03t0801700-01
Chr03	irgsp1_rep	CDS	33436369	33436574	.	-	0	Parent=Os03t0801700-01
Chr03	irgsp1_rep	CDS	33435145	33435308	.	-	1	Parent=Os03t0801700-01
Chr03	irgsp1_rep	CDS	33434771	33434906	.	-	2	Parent=Os03t0801700-01
Chr03	irgsp1_rep	CDS	33434491	33434666	.	-	1	Parent=Os03t0801700-01
Chr03	irgsp1_rep	CDS	33433907	33434400	.	-	2	Parent=Os03t0801700-01
Chr03	irgsp1_rep	three_prime_UTR	33433385	33433906	.	-	.	Parent=Os03t0801700-01
Chr03	irgsp1_rep	mRNA	33437698	33444914	.	+	.	ID=Os03t0801800-01;Name=Os03t0801800-01;Locus_id=Os03g0801800;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK067130 (DDBJ%2C Best hit);ORF_evidence=Q84T02 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013098N20;Expression=AK067130;TENOR=Os03t0801800-01;KEGG=Os03t0801800-01
Chr03	irgsp1_rep	five_prime_UTR	33437698	33437746	.	+	.	Parent=Os03t0801800-01
Chr03	irgsp1_rep	CDS	33437747	33437893	.	+	0	Parent=Os03t0801800-01
Chr03	irgsp1_rep	CDS	33438017	33438077	.	+	0	Parent=Os03t0801800-01
Chr03	irgsp1_rep	CDS	33438154	33438190	.	+	2	Parent=Os03t0801800-01
Chr03	irgsp1_rep	CDS	33438651	33438781	.	+	1	Parent=Os03t0801800-01
Chr03	irgsp1_rep	CDS	33438861	33439004	.	+	2	Parent=Os03t0801800-01
Chr03	irgsp1_rep	CDS	33439100	33439190	.	+	2	Parent=Os03t0801800-01
Chr03	irgsp1_rep	CDS	33439387	33439520	.	+	1	Parent=Os03t0801800-01
Chr03	irgsp1_rep	CDS	33439648	33439787	.	+	2	Parent=Os03t0801800-01
Chr03	irgsp1_rep	CDS	33440790	33440840	.	+	0	Parent=Os03t0801800-01
Chr03	irgsp1_rep	CDS	33440934	33441016	.	+	0	Parent=Os03t0801800-01
Chr03	irgsp1_rep	CDS	33441104	33441158	.	+	1	Parent=Os03t0801800-01
Chr03	irgsp1_rep	CDS	33441240	33441351	.	+	0	Parent=Os03t0801800-01
Chr03	irgsp1_rep	CDS	33441688	33442180	.	+	2	Parent=Os03t0801800-01
Chr03	irgsp1_rep	CDS	33442295	33442508	.	+	1	Parent=Os03t0801800-01
Chr03	irgsp1_rep	CDS	33442617	33442687	.	+	0	Parent=Os03t0801800-01
Chr03	irgsp1_rep	CDS	33443147	33443315	.	+	1	Parent=Os03t0801800-01
Chr03	irgsp1_rep	CDS	33443405	33443534	.	+	0	Parent=Os03t0801800-01
Chr03	irgsp1_rep	CDS	33443970	33444382	.	+	2	Parent=Os03t0801800-01
Chr03	irgsp1_rep	CDS	33444473	33444676	.	+	0	Parent=Os03t0801800-01
Chr03	irgsp1_rep	three_prime_UTR	33444677	33444914	.	+	.	Parent=Os03t0801800-01
Chr03	irgsp1_rep	mRNA	33453405	33456855	.	+	.	ID=Os03t0801900-01;Name=Os03t0801900-01;Locus_id=Os03g0801900;Note=Protein of unknown function DUF569 family protein.;Transcript_evidence=AK106415 (DDBJ%2C Best hit);ORF_evidence=B8ALU1 (UniProt);InterPro=Protein of unknown function DUF569 (IPR007679),Actin cross-linking (IPR008999);NIAS_FLcDNA=002-103-A05;Expression=AK106415;TENOR=Os03t0801900-01;KEGG=Os03t0801900-01
Chr03	irgsp1_rep	five_prime_UTR	33453405	33453524	.	+	.	Parent=Os03t0801900-01
Chr03	irgsp1_rep	CDS	33453525	33454274	.	+	0	Parent=Os03t0801900-01
Chr03	irgsp1_rep	CDS	33454662	33454950	.	+	0	Parent=Os03t0801900-01
Chr03	irgsp1_rep	CDS	33456556	33456590	.	+	2	Parent=Os03t0801900-01
Chr03	irgsp1_rep	three_prime_UTR	33456591	33456855	.	+	.	Parent=Os03t0801900-01
Chr03	irgsp1_rep	mRNA	33465890	33467951	.	+	.	ID=Os03t0802100-01;Name=Os03t0802100-01;Locus_id=Os03g0802100;Oryzabase Gene Symbol Synonym(s)=OsFbox176%2C Os_F0077;Oryzabase Gene Name Synonym(s)=F-box protein 176;Note=Similar to F-box domain containing protein%2C expressed.;Transcript_evidence=AK288197 (DDBJ%2C Best hit);ORF_evidence=Q10BX1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Protein of unknown function DUF295 (IPR005174),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J090008D16;Oryzabase=16965;TENOR=Os03t0802100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	33465890	33466278	.	+	.	Parent=Os03t0802100-01
Chr03	irgsp1_rep	five_prime_UTR	33466356	33466365	.	+	.	Parent=Os03t0802100-01
Chr03	irgsp1_rep	CDS	33466366	33467907	.	+	0	Parent=Os03t0802100-01
Chr03	irgsp1_rep	three_prime_UTR	33467908	33467951	.	+	.	Parent=Os03t0802100-01
Chr03	irgsp1_rep	mRNA	33471596	33472293	.	+	.	ID=Os03t0802200-01;Name=Os03t0802200-01;Locus_id=Os03g0802200;Note=Non-protein coding transcript.;Transcript_evidence=AK111769 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023071D17;TENOR=Os03t0802200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	exon	33471596	33471885	.	+	.	Parent=Os03t0802200-01
Chr03	irgsp1_rep	exon	33471997	33472293	.	+	.	Parent=Os03t0802200-01
Chr03	irgsp1_rep	mRNA	33474419	33480206	.	-	.	ID=Os03t0802300-01;Name=Os03t0802300-01;Locus_id=Os03g0802300;Note=Hypothetical conserved gene.;Transcript_evidence=AK120687 (DDBJ%2C Best hit);ORF_evidence=Q10BW7 (UniProt);NIAS_FLcDNA=J013168L01;Expression=AK120687;TENOR=Os03t0802300-01;KEGG=Os03t0802300-01
Chr03	irgsp1_rep	five_prime_UTR	33478211	33480206	.	-	.	Parent=Os03t0802300-01
Chr03	irgsp1_rep	CDS	33476727	33477511	.	-	0	Parent=Os03t0802300-01
Chr03	irgsp1_rep	CDS	33476364	33476475	.	-	1	Parent=Os03t0802300-01
Chr03	irgsp1_rep	CDS	33474825	33475471	.	-	0	Parent=Os03t0802300-01
Chr03	irgsp1_rep	CDS	33474624	33474741	.	-	1	Parent=Os03t0802300-01
Chr03	irgsp1_rep	three_prime_UTR	33474419	33474623	.	-	.	Parent=Os03t0802300-01
Chr03	irgsp1_rep	mRNA	33474343	33480198	.	-	.	ID=Os03t0802300-02;Name=Os03t0802300-02;Locus_id=Os03g0802300;Note=Conserved hypothetical protein.;Transcript_evidence=AK120564 (DDBJ%2C Best hit);ORF_evidence=B8ALR3 (UniProt);NIAS_FLcDNA=J013132N21;Expression=AK120564;TENOR=Os03t0802300-02;KEGG=Os03t0802300-02
Chr03	irgsp1_rep	five_prime_UTR	33480050	33480198	.	-	.	Parent=Os03t0802300-02
Chr03	irgsp1_rep	CDS	33479737	33480049	.	-	0	Parent=Os03t0802300-02
Chr03	irgsp1_rep	CDS	33478211	33478281	.	-	2	Parent=Os03t0802300-02
Chr03	irgsp1_rep	CDS	33476727	33477511	.	-	0	Parent=Os03t0802300-02
Chr03	irgsp1_rep	CDS	33476364	33476475	.	-	1	Parent=Os03t0802300-02
Chr03	irgsp1_rep	CDS	33474825	33475471	.	-	0	Parent=Os03t0802300-02
Chr03	irgsp1_rep	CDS	33474624	33474741	.	-	1	Parent=Os03t0802300-02
Chr03	irgsp1_rep	three_prime_UTR	33474343	33474623	.	-	.	Parent=Os03t0802300-02
Chr03	irgsp1_rep	mRNA	33474417	33477511	.	-	.	ID=Os03t0802300-03;Name=Os03t0802300-03;Locus_id=Os03g0802300;Note=Hypothetical conserved gene.;Transcript_evidence=AK105727 (DDBJ%2C Best hit);ORF_evidence=Q10BW7 (UniProt);NIAS_FLcDNA=001-201-G11;Expression=AK105727;TENOR=Os03t0802300-03;KEGG=Os03t0802300-03
Chr03	irgsp1_rep	CDS	33476727	33477511	.	-	0	Parent=Os03t0802300-03
Chr03	irgsp1_rep	CDS	33476364	33476475	.	-	1	Parent=Os03t0802300-03
Chr03	irgsp1_rep	CDS	33474825	33475471	.	-	0	Parent=Os03t0802300-03
Chr03	irgsp1_rep	CDS	33474624	33474741	.	-	1	Parent=Os03t0802300-03
Chr03	irgsp1_rep	three_prime_UTR	33474417	33474623	.	-	.	Parent=Os03t0802300-03
Chr03	irgsp1_rep	mRNA	33482036	33483489	.	-	.	ID=Os03t0802400-01;Name=Os03t0802400-01;Locus_id=Os03g0802400;Note=Similar to Avr9/Cf-9 rapidly elicited protein 102 (Fragment).;Transcript_evidence=AK110996 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-174-E06;Expression=AK110996;TENOR=Os03t0802400-01;KEGG=Os03t0802400-01
Chr03	irgsp1_rep	five_prime_UTR	33482582	33483489	.	-	.	Parent=Os03t0802400-01
Chr03	irgsp1_rep	CDS	33482333	33482581	.	-	0	Parent=Os03t0802400-01
Chr03	irgsp1_rep	three_prime_UTR	33482036	33482332	.	-	.	Parent=Os03t0802400-01
Chr03	irgsp1_rep	mRNA	33482291	33484111	.	+	.	ID=Os03t0802500-01;Name=Os03t0802500-01;Locus_id=Os03g0802500;Oryzabase Gene Name Synonym(s)=Homo sapiens h-bcs1 (BCS1) mitochondrial protein homolog%2C OsAAA-ATPase1%2C AAA-ATPase1;Note=ATPase%2C AAA-type%2C core domain containing protein.;Transcript_evidence=AK104696 (DDBJ%2C Best hit),AK070731 (DDBJ%2C Best hit),AK099212 (DDBJ%2C Best hit);ORF_evidence=B6SVY2 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);NIAS_FLcDNA=001-037-A09,J023061A01,J013070J17;Oryzabase=16036;Expression=AK104696;TENOR=Os03t0802500-01;KEGG=Os03t0802500-01
Chr03	irgsp1_rep	five_prime_UTR	33482291	33482384	.	+	.	Parent=Os03t0802500-01
Chr03	irgsp1_rep	CDS	33482385	33483947	.	+	0	Parent=Os03t0802500-01
Chr03	irgsp1_rep	three_prime_UTR	33483948	33484111	.	+	.	Parent=Os03t0802500-01
Chr03	irgsp1_rep	mRNA	33487657	33489809	.	+	.	ID=Os03t0802600-01;Name=Os03t0802600-01;Locus_id=Os03g0802600;Oryzabase Gene Name Synonym(s)=ATPase;Note=ATPase%2C AAA-type%2C core domain containing protein.;Transcript_evidence=AK243420 (DDBJ%2C Best hit);ORF_evidence=B6SVY2 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);NIAS_FLcDNA=J100066N02;Oryzabase=21870;TENOR=Os03t0802600-01;KEGG=Os03t0802600-01
Chr03	irgsp1_rep	five_prime_UTR	33487657	33487742	.	+	.	Parent=Os03t0802600-01
Chr03	irgsp1_rep	CDS	33487743	33488395	.	+	0	Parent=Os03t0802600-01
Chr03	irgsp1_rep	CDS	33488653	33489535	.	+	1	Parent=Os03t0802600-01
Chr03	irgsp1_rep	three_prime_UTR	33489536	33489809	.	+	.	Parent=Os03t0802600-01
Chr03	irgsp1_rep	mRNA	33488395	33489509	.	-	.	ID=Os03t0802650-00;Name=Os03t0802650-00;Locus_id=Os03g0802650;Note=Hypothetical gene.;Transcript_evidence=CT837941 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os03t0802650-00;KEGG=Os03t0802650-00
Chr03	irgsp1_rep	five_prime_UTR	33489509	33489509	.	-	.	Parent=Os03t0802650-00
Chr03	irgsp1_rep	CDS	33489146	33489508	.	-	0	Parent=Os03t0802650-00
Chr03	irgsp1_rep	three_prime_UTR	33489099	33489145	.	-	.	Parent=Os03t0802650-00
Chr03	irgsp1_rep	three_prime_UTR	33488395	33489089	.	-	.	Parent=Os03t0802650-00
Chr03	irgsp1_rep	mRNA	33489601	33493527	.	-	.	ID=Os03t0802700-01;Name=Os03t0802700-01;Locus_id=Os03g0802700;Oryzabase Gene Symbol Synonym(s)=OsRH27;Oryzabase Gene Name Synonym(s)=RNA helicase 27;Note=RH27 helicase (Fragment).;Transcript_evidence=AK288909 (DDBJ%2C Best hit);ORF_evidence=XP_003081470.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=RNA helicase%2C ATP-dependent%2C DEAD-box%2C conserved site (IPR000629),Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=J090081E14;Oryzabase=19139;TENOR=Os03t0802700-01;KEGG=Os03t0802700-01 (EC:3.6.4.13)
Chr03	irgsp1_rep	five_prime_UTR	33493440	33493527	.	-	.	Parent=Os03t0802700-01
Chr03	irgsp1_rep	CDS	33493077	33493439	.	-	0	Parent=Os03t0802700-01
Chr03	irgsp1_rep	CDS	33492632	33492817	.	-	0	Parent=Os03t0802700-01
Chr03	irgsp1_rep	CDS	33492176	33492361	.	-	0	Parent=Os03t0802700-01
Chr03	irgsp1_rep	CDS	33491847	33491930	.	-	0	Parent=Os03t0802700-01
Chr03	irgsp1_rep	CDS	33491685	33491726	.	-	0	Parent=Os03t0802700-01
Chr03	irgsp1_rep	CDS	33491507	33491596	.	-	0	Parent=Os03t0802700-01
Chr03	irgsp1_rep	CDS	33491131	33491430	.	-	0	Parent=Os03t0802700-01
Chr03	irgsp1_rep	CDS	33491009	33491047	.	-	0	Parent=Os03t0802700-01
Chr03	irgsp1_rep	CDS	33490815	33490919	.	-	0	Parent=Os03t0802700-01
Chr03	irgsp1_rep	CDS	33490668	33490736	.	-	0	Parent=Os03t0802700-01
Chr03	irgsp1_rep	CDS	33490458	33490583	.	-	0	Parent=Os03t0802700-01
Chr03	irgsp1_rep	CDS	33489780	33489962	.	-	0	Parent=Os03t0802700-01
Chr03	irgsp1_rep	three_prime_UTR	33489601	33489779	.	-	.	Parent=Os03t0802700-01
Chr03	irgsp1_rep	mRNA	33494125	33495613	.	-	.	ID=Os03t0802800-01;Name=Os03t0802800-01;Locus_id=Os03g0802800;Note=Conserved hypothetical protein.;Transcript_evidence=AK059670 (DDBJ%2C Best hit);ORF_evidence=Q84T06 (UniProt);NIAS_FLcDNA=001-031-F07;Expression=AK059670;TENOR=Os03t0802800-01;KEGG=Os03t0802800-01
Chr03	irgsp1_rep	five_prime_UTR	33495612	33495613	.	-	.	Parent=Os03t0802800-01
Chr03	irgsp1_rep	CDS	33495589	33495611	.	-	0	Parent=Os03t0802800-01
Chr03	irgsp1_rep	CDS	33495286	33495477	.	-	1	Parent=Os03t0802800-01
Chr03	irgsp1_rep	CDS	33494540	33495197	.	-	1	Parent=Os03t0802800-01
Chr03	irgsp1_rep	three_prime_UTR	33494125	33494539	.	-	.	Parent=Os03t0802800-01
Chr03	irgsp1_rep	mRNA	33500903	33504993	.	-	.	ID=Os03t0802900-01;Name=Os03t0802900-01;Locus_id=Os03g0802900;Oryzabase Gene Symbol Synonym(s)=OsbHLH089%2C bHLH089%2C bHLH89;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 089;Note=Similar to MYC1.;Transcript_evidence=AK100177 (DDBJ%2C Best hit);ORF_evidence=F1DK89 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J023029J10;Oryzabase=15376;Expression=AK100177;TENOR=Os03t0802900-01;KEGG=Os03t0802900-01
Chr03	irgsp1_rep	five_prime_UTR	33504860	33504993	.	-	.	Parent=Os03t0802900-01
Chr03	irgsp1_rep	CDS	33504608	33504859	.	-	0	Parent=Os03t0802900-01
Chr03	irgsp1_rep	CDS	33502439	33502642	.	-	0	Parent=Os03t0802900-01
Chr03	irgsp1_rep	CDS	33502196	33502261	.	-	0	Parent=Os03t0802900-01
Chr03	irgsp1_rep	CDS	33501991	33502059	.	-	0	Parent=Os03t0802900-01
Chr03	irgsp1_rep	CDS	33501832	33501903	.	-	0	Parent=Os03t0802900-01
Chr03	irgsp1_rep	CDS	33501175	33501309	.	-	0	Parent=Os03t0802900-01
Chr03	irgsp1_rep	three_prime_UTR	33500903	33501174	.	-	.	Parent=Os03t0802900-01
Chr03	irgsp1_rep	mRNA	33507134	33510352	.	+	.	ID=Os03t0803000-01;Name=Os03t0803000-01;Locus_id=Os03g0803000;CGSNL Gene Symbol=VAMP721;CGSNL Gene Name=VESICLE-ASSOCIATED MEMBRANE PROTEIN 721;Oryzabase Gene Symbol Synonym(s)=OsVAMP721;Oryzabase Gene Name Synonym(s)=vesicle-associated membrane protein 721;Note=Synaptobrevin domain containing protein.;Transcript_evidence=AK102944 (DDBJ%2C Best hit);ORF_evidence=NP_001149329.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: integral to membrane (GO:0016021);InterPro=Synaptobrevin (IPR001388),Longin (IPR010908),Longin-like (IPR011012);NIAS_FLcDNA=J033114L14;Oryzabase=23046;Expression=AK102944;TENOR=Os03t0803000-01;KEGG=Os03t0803000-01
Chr03	irgsp1_rep	five_prime_UTR	33507134	33507328	.	+	.	Parent=Os03t0803000-01
Chr03	irgsp1_rep	CDS	33507329	33507518	.	+	0	Parent=Os03t0803000-01
Chr03	irgsp1_rep	CDS	33508557	33508698	.	+	2	Parent=Os03t0803000-01
Chr03	irgsp1_rep	CDS	33508779	33508899	.	+	1	Parent=Os03t0803000-01
Chr03	irgsp1_rep	CDS	33509004	33509066	.	+	0	Parent=Os03t0803000-01
Chr03	irgsp1_rep	CDS	33509938	33510084	.	+	0	Parent=Os03t0803000-01
Chr03	irgsp1_rep	three_prime_UTR	33510085	33510352	.	+	.	Parent=Os03t0803000-01
Chr03	irgsp1_rep	mRNA	33512945	33513227	.	-	.	ID=Os03t0803066-01;Name=Os03t0803066-01;Locus_id=Os03g0803066;Note=Non-protein coding transcript.;Transcript_evidence=AK242539 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080317N06;TENOR=Os03t0803066-01
Chr03	irgsp1_rep	exon	33512945	33513227	.	-	.	Parent=Os03t0803066-01
Chr03	irgsp1_rep	mRNA	33513238	33513648	.	-	.	ID=Os03t0803100-00;Name=Os03t0803100-00;Locus_id=Os03g0803100;Note=Unknow protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001051607.1 (RefSeq);TENOR=Os03t0803100-00;KEGG=Os03t0803100-00
Chr03	irgsp1_rep	CDS	33513238	33513648	.	-	0	Parent=Os03t0803100-00
Chr03	irgsp1_rep	mRNA	33516990	33518901	.	-	.	ID=Os03t0803200-01;Name=Os03t0803200-01;Locus_id=Os03g0803200;Note=Similar to CLE family OsCLE306 protein.;Transcript_evidence=AK111283 (DDBJ%2C Best hit);ORF_evidence=A8R3N5 (UniProt);NIAS_FLcDNA=002-180-H06;TENOR=Os03t0803200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	33518730	33518901	.	-	.	Parent=Os03t0803200-01
Chr03	irgsp1_rep	CDS	33518476	33518729	.	-	0	Parent=Os03t0803200-01
Chr03	irgsp1_rep	CDS	33517509	33517548	.	-	1	Parent=Os03t0803200-01
Chr03	irgsp1_rep	three_prime_UTR	33516990	33517508	.	-	.	Parent=Os03t0803200-01
Chr03	irgsp1_rep	mRNA	33517351	33517675	.	+	.	ID=Os03t0803250-00;Name=Os03t0803250-00;Locus_id=Os03g0803250;Note=Non-protein coding transcript.;Transcript_evidence=EU958975 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0803250-00
Chr03	irgsp1_rep	exon	33517351	33517675	.	+	.	Parent=Os03t0803250-00
Chr03	irgsp1_rep	mRNA	33519431	33520097	.	-	.	ID=Os03t0803300-01;Name=Os03t0803300-01;Locus_id=Os03g0803300;Note=Non-protein coding transcript.;Transcript_evidence=AK061608 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-031-A03;TENOR=Os03t0803300-01
Chr03	irgsp1_rep	exon	33519431	33520097	.	-	.	Parent=Os03t0803300-01
Chr03	irgsp1_rep	mRNA	33522573	33524525	.	-	.	ID=Os03t0803500-01;Name=Os03t0803500-01;Locus_id=Os03g0803500;Note=Similar to Prolyl 4-hydroxylase alpha-1 subunit-like protein.;Transcript_evidence=AK059759 (DDBJ%2C Best hit);ORF_evidence=B6TAV1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706),Molecular Function: L-ascorbic acid binding (GO:0031418);InterPro=Metridin-like ShK toxin (IPR003582),Oxoglutarate/iron-dependent oxygenase (IPR005123),Prolyl 4-hydroxylase%2C alpha subunit (IPR006620);NIAS_FLcDNA=006-203-E11;Expression=AK059759;TENOR=Os03t0803500-01;KEGG=Os03t0803500-01 (EC:1.14.11.2)
Chr03	irgsp1_rep	five_prime_UTR	33524512	33524525	.	-	.	Parent=Os03t0803500-01
Chr03	irgsp1_rep	CDS	33524378	33524511	.	-	0	Parent=Os03t0803500-01
Chr03	irgsp1_rep	CDS	33524207	33524264	.	-	1	Parent=Os03t0803500-01
Chr03	irgsp1_rep	CDS	33523995	33524099	.	-	0	Parent=Os03t0803500-01
Chr03	irgsp1_rep	CDS	33523605	33523662	.	-	0	Parent=Os03t0803500-01
Chr03	irgsp1_rep	CDS	33523345	33523520	.	-	2	Parent=Os03t0803500-01
Chr03	irgsp1_rep	CDS	33523205	33523265	.	-	0	Parent=Os03t0803500-01
Chr03	irgsp1_rep	CDS	33522773	33523080	.	-	2	Parent=Os03t0803500-01
Chr03	irgsp1_rep	three_prime_UTR	33522573	33522772	.	-	.	Parent=Os03t0803500-01
Chr03	irgsp1_rep	mRNA	33525483	33526681	.	-	.	ID=Os03t0803600-01;Name=Os03t0803600-01;Locus_id=Os03g0803600;Note=Glycosyl transferase%2C family 31 protein.;Transcript_evidence=AK241975 (DDBJ%2C Best hit);ORF_evidence=B6SJ23 (UniProt);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Glycosyl transferase%2C family 31 (IPR002659);NIAS_FLcDNA=J075096G10;TENOR=Os03t0803600-01;KEGG=Os03t0803600-01
Chr03	irgsp1_rep	five_prime_UTR	33526680	33526681	.	-	.	Parent=Os03t0803600-01
Chr03	irgsp1_rep	CDS	33526638	33526679	.	-	0	Parent=Os03t0803600-01
Chr03	irgsp1_rep	CDS	33526161	33526268	.	-	0	Parent=Os03t0803600-01
Chr03	irgsp1_rep	CDS	33525857	33526066	.	-	0	Parent=Os03t0803600-01
Chr03	irgsp1_rep	three_prime_UTR	33525483	33525856	.	-	.	Parent=Os03t0803600-01
Chr03	irgsp1_rep	mRNA	33530088	33534423	.	-	.	ID=Os03t0803700-01;Name=Os03t0803700-01;Locus_id=Os03g0803700;Note=Hypothetical conserved gene.;Transcript_evidence=AK064481 (DDBJ%2C Best hit);ORF_evidence=Q84T10 (UniProt);NIAS_FLcDNA=002-111-A10;Expression=AK064481;TENOR=Os03t0803700-01;KEGG=Os03t0803700-01
Chr03	irgsp1_rep	CDS	33534346	33534423	.	-	0	Parent=Os03t0803700-01
Chr03	irgsp1_rep	CDS	33534098	33534210	.	-	0	Parent=Os03t0803700-01
Chr03	irgsp1_rep	CDS	33533517	33533910	.	-	1	Parent=Os03t0803700-01
Chr03	irgsp1_rep	CDS	33533001	33533318	.	-	0	Parent=Os03t0803700-01
Chr03	irgsp1_rep	CDS	33531924	33532238	.	-	0	Parent=Os03t0803700-01
Chr03	irgsp1_rep	three_prime_UTR	33530088	33531923	.	-	.	Parent=Os03t0803700-01
Chr03	irgsp1_rep	mRNA	33539106	33544590	.	-	.	ID=Os03t0803800-01;Name=Os03t0803800-01;Locus_id=Os03g0803800;Note=Conserved hypothetical protein.;Transcript_evidence=AK063484 (DDBJ%2C Best hit);ORF_evidence=Q10BV4 (UniProt);NIAS_FLcDNA=001-116-C01;Expression=AK063484;TENOR=Os03t0803800-01;KEGG=Os03t0803800-01
Chr03	irgsp1_rep	five_prime_UTR	33544528	33544590	.	-	.	Parent=Os03t0803800-01
Chr03	irgsp1_rep	CDS	33543808	33544527	.	-	0	Parent=Os03t0803800-01
Chr03	irgsp1_rep	CDS	33542558	33542892	.	-	0	Parent=Os03t0803800-01
Chr03	irgsp1_rep	CDS	33541763	33542399	.	-	1	Parent=Os03t0803800-01
Chr03	irgsp1_rep	CDS	33541363	33541467	.	-	0	Parent=Os03t0803800-01
Chr03	irgsp1_rep	CDS	33539106	33539234	.	-	0	Parent=Os03t0803800-01
Chr03	irgsp1_rep	mRNA	33546574	33551064	.	-	.	ID=Os03t0803900-01;Name=Os03t0803900-01;Locus_id=Os03g0803900;Note=Similar to predicted protein.;Transcript_evidence=AK288442 (DDBJ%2C Best hit);ORF_evidence=NP_201068.1 (RefSeq);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: sugar binding (GO:0005529),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Galectin%2C carbohydrate recognition domain (IPR001079),Glycosyl transferase%2C family 31 (IPR002659),Concanavalin A-like lectin/glucanase (IPR008985),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320);NIAS_FLcDNA=J090034J02;TENOR=Os03t0803900-01;KEGG=Os03t0803900-01
Chr03	irgsp1_rep	five_prime_UTR	33550850	33551064	.	-	.	Parent=Os03t0803900-01
Chr03	irgsp1_rep	CDS	33550021	33550849	.	-	0	Parent=Os03t0803900-01
Chr03	irgsp1_rep	CDS	33549671	33549903	.	-	2	Parent=Os03t0803900-01
Chr03	irgsp1_rep	CDS	33549272	33549559	.	-	0	Parent=Os03t0803900-01
Chr03	irgsp1_rep	CDS	33549051	33549179	.	-	0	Parent=Os03t0803900-01
Chr03	irgsp1_rep	CDS	33548747	33548971	.	-	0	Parent=Os03t0803900-01
Chr03	irgsp1_rep	three_prime_UTR	33547520	33548746	.	-	.	Parent=Os03t0803900-01
Chr03	irgsp1_rep	three_prime_UTR	33546574	33547254	.	-	.	Parent=Os03t0803900-01
Chr03	irgsp1_rep	mRNA	33553283	33554230	.	-	.	ID=Os03t0804000-01;Name=Os03t0804000-01;Locus_id=Os03g0804000;Note=Hypothetical protein.;Transcript_evidence=AK059908 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=006-208-H11;Expression=AK059908;TENOR=Os03t0804000-01;KEGG=Os03t0804000-01
Chr03	irgsp1_rep	five_prime_UTR	33553673	33554230	.	-	.	Parent=Os03t0804000-01
Chr03	irgsp1_rep	CDS	33553319	33553672	.	-	0	Parent=Os03t0804000-01
Chr03	irgsp1_rep	three_prime_UTR	33553283	33553318	.	-	.	Parent=Os03t0804000-01
Chr03	irgsp1_rep	mRNA	33553633	33556354	.	+	.	ID=Os03t0804100-00;Name=Os03t0804100-00;Locus_id=Os03g0804100;Note=Conserved hypothetical protein.;Transcript_evidence=FP100876 (DDBJ);ORF_evidence=NP_001051616.1 (RefSeq);TENOR=Os03t0804100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	33553633	33553736	.	+	0	Parent=Os03t0804100-00
Chr03	irgsp1_rep	CDS	33553822	33553963	.	+	1	Parent=Os03t0804100-00
Chr03	irgsp1_rep	CDS	33554071	33554193	.	+	0	Parent=Os03t0804100-00
Chr03	irgsp1_rep	CDS	33554289	33554373	.	+	0	Parent=Os03t0804100-00
Chr03	irgsp1_rep	CDS	33555992	33556161	.	+	2	Parent=Os03t0804100-00
Chr03	irgsp1_rep	three_prime_UTR	33556162	33556354	.	+	.	Parent=Os03t0804100-00
Chr03	irgsp1_rep	mRNA	33563702	33566613	.	+	.	ID=Os03t0804200-01;Name=Os03t0804200-01;Locus_id=Os03g0804200;Oryzabase Gene Symbol Synonym(s)=OsLTPG10%2C OsLTPg10%2C LTPL83;Oryzabase Gene Name Synonym(s)=GPI-anchored non-specific lipid transfer protein 10%2C type G nsLTP 10%2C type G non-specific lipid transfer protein 10;Note=Bifunctional inhibitor/plant lipid transfer protein/seed storage domain containing protein.;Transcript_evidence=AK241129 (DDBJ%2C Best hit);ORF_evidence=A2XN28 (UniProt);GO=Biological Process: lipid transport (GO:0006869),Molecular Function: lipid binding (GO:0008289);InterPro=Plant lipid transfer protein/Par allergen (IPR000528),Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=J065097G18;Oryzabase=13496;TENOR=Os03t0804200-01;KEGG=Os03t0804200-01
Chr03	irgsp1_rep	five_prime_UTR	33563702	33563778	.	+	.	Parent=Os03t0804200-01
Chr03	irgsp1_rep	CDS	33563779	33564121	.	+	0	Parent=Os03t0804200-01
Chr03	irgsp1_rep	CDS	33565097	33565213	.	+	2	Parent=Os03t0804200-01
Chr03	irgsp1_rep	CDS	33566077	33566204	.	+	2	Parent=Os03t0804200-01
Chr03	irgsp1_rep	three_prime_UTR	33566205	33566613	.	+	.	Parent=Os03t0804200-01
Chr03	irgsp1_rep	mRNA	33570553	33576113	.	-	.	ID=Os03t0804300-01;Name=Os03t0804300-01;Locus_id=Os03g0804300;Note=Zinc finger%2C DHHC-type domain containing protein.;Transcript_evidence=AK067295 (DDBJ%2C Best hit);ORF_evidence=NP_001148846.1 (RefSeq);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C DHHC-type%2C palmitoyltransferase (IPR001594);NIAS_FLcDNA=J013106J21;TENOR=Os03t0804300-01
Chr03	irgsp1_rep	five_prime_UTR	33575931	33576113	.	-	.	Parent=Os03t0804300-01
Chr03	irgsp1_rep	CDS	33575718	33575930	.	-	0	Parent=Os03t0804300-01
Chr03	irgsp1_rep	CDS	33574416	33574659	.	-	0	Parent=Os03t0804300-01
Chr03	irgsp1_rep	CDS	33574221	33574312	.	-	2	Parent=Os03t0804300-01
Chr03	irgsp1_rep	CDS	33572870	33572993	.	-	0	Parent=Os03t0804300-01
Chr03	irgsp1_rep	CDS	33572696	33572784	.	-	2	Parent=Os03t0804300-01
Chr03	irgsp1_rep	CDS	33572520	33572582	.	-	0	Parent=Os03t0804300-01
Chr03	irgsp1_rep	CDS	33570966	33571091	.	-	0	Parent=Os03t0804300-01
Chr03	irgsp1_rep	three_prime_UTR	33570553	33570965	.	-	.	Parent=Os03t0804300-01
Chr03	irgsp1_rep	mRNA	33570558	33576085	.	-	.	ID=Os03t0804300-02;Name=Os03t0804300-02;Locus_id=Os03g0804300;Note=Zinc finger%2C DHHC-type domain containing protein.;Transcript_evidence=AK104353 (DDBJ%2C Best hit),AK106099 (DDBJ%2C Best hit);ORF_evidence=NP_001148846.1 (RefSeq);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C DHHC-type%2C palmitoyltransferase (IPR001594);NIAS_FLcDNA=001-034-G12,001-207-C04;TENOR=Os03t0804300-02
Chr03	irgsp1_rep	five_prime_UTR	33575931	33576085	.	-	.	Parent=Os03t0804300-02
Chr03	irgsp1_rep	CDS	33575718	33575930	.	-	0	Parent=Os03t0804300-02
Chr03	irgsp1_rep	CDS	33574416	33574659	.	-	0	Parent=Os03t0804300-02
Chr03	irgsp1_rep	CDS	33574221	33574312	.	-	2	Parent=Os03t0804300-02
Chr03	irgsp1_rep	CDS	33572870	33572993	.	-	0	Parent=Os03t0804300-02
Chr03	irgsp1_rep	CDS	33572696	33572784	.	-	2	Parent=Os03t0804300-02
Chr03	irgsp1_rep	CDS	33572520	33572582	.	-	0	Parent=Os03t0804300-02
Chr03	irgsp1_rep	CDS	33570966	33571091	.	-	0	Parent=Os03t0804300-02
Chr03	irgsp1_rep	three_prime_UTR	33570558	33570965	.	-	.	Parent=Os03t0804300-02
Chr03	irgsp1_rep	mRNA	33579493	33585132	.	+	.	ID=Os03t0804400-01;Name=Os03t0804400-01;Locus_id=Os03g0804400;Note=Vps51/Vps67 domain containing protein.;Transcript_evidence=AK120592 (DDBJ%2C Best hit);ORF_evidence=Q75HJ9 (UniProt);InterPro=Vacuolar protein sorting-associated protein 51 (IPR014812),Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=J013146K15;Expression=AK120592;TENOR=Os03t0804400-01;KEGG=Os03t0804400-01
Chr03	irgsp1_rep	five_prime_UTR	33579493	33579678	.	+	.	Parent=Os03t0804400-01
Chr03	irgsp1_rep	CDS	33579679	33579861	.	+	0	Parent=Os03t0804400-01
Chr03	irgsp1_rep	CDS	33580785	33580882	.	+	0	Parent=Os03t0804400-01
Chr03	irgsp1_rep	CDS	33581324	33582359	.	+	1	Parent=Os03t0804400-01
Chr03	irgsp1_rep	CDS	33582456	33583064	.	+	0	Parent=Os03t0804400-01
Chr03	irgsp1_rep	three_prime_UTR	33583065	33584058	.	+	.	Parent=Os03t0804400-01
Chr03	irgsp1_rep	three_prime_UTR	33584129	33584262	.	+	.	Parent=Os03t0804400-01
Chr03	irgsp1_rep	three_prime_UTR	33584610	33585132	.	+	.	Parent=Os03t0804400-01
Chr03	irgsp1_rep	mRNA	33582069	33585133	.	+	.	ID=Os03t0804400-02;Name=Os03t0804400-02;Locus_id=Os03g0804400;Note=Conserved hypothetical protein.;Transcript_evidence=AK073430 (DDBJ%2C Best hit);ORF_evidence=Q75HJ9 (UniProt);NIAS_FLcDNA=J033043M17;TENOR=Os03t0804400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	33582069	33582149	.	+	.	Parent=Os03t0804400-02
Chr03	irgsp1_rep	CDS	33582150	33582359	.	+	0	Parent=Os03t0804400-02
Chr03	irgsp1_rep	CDS	33582456	33582968	.	+	0	Parent=Os03t0804400-02
Chr03	irgsp1_rep	CDS	33583870	33584058	.	+	0	Parent=Os03t0804400-02
Chr03	irgsp1_rep	CDS	33584129	33584262	.	+	0	Parent=Os03t0804400-02
Chr03	irgsp1_rep	CDS	33584610	33584772	.	+	1	Parent=Os03t0804400-02
Chr03	irgsp1_rep	three_prime_UTR	33584773	33585133	.	+	.	Parent=Os03t0804400-02
Chr03	irgsp1_rep	mRNA	33586465	33587320	.	+	.	ID=Os03t0804500-01;Name=Os03t0804500-01;Locus_id=Os03g0804500;Oryzabase Gene Symbol Synonym(s)=GER7%2C OsGLP3-7%2C GLP3-7;Oryzabase Gene Name Synonym(s)=germin-like protein 7%2C german-like protein 3-7;Note=Similar to Germin-like protein subfamily T member 1 precursor.;Transcript_evidence=AK062698 (DDBJ%2C Best hit);ORF_evidence=Q10BU2 (UniProt);GO=Cellular Component: apoplast (GO:0048046),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),Germin%2C manganese binding site (IPR019780);NIAS_FLcDNA=001-106-A11;Oryzabase=15706;Expression=AK062698;TENOR=Os03t0804500-01;KEGG=Os03t0804500-01
Chr03	irgsp1_rep	five_prime_UTR	33586465	33586473	.	+	.	Parent=Os03t0804500-01
Chr03	irgsp1_rep	CDS	33586474	33587175	.	+	0	Parent=Os03t0804500-01
Chr03	irgsp1_rep	three_prime_UTR	33587176	33587320	.	+	.	Parent=Os03t0804500-01
Chr03	irgsp1_rep	mRNA	33588552	33589411	.	-	.	ID=Os03t0804600-00;Name=Os03t0804600-00;Locus_id=Os03g0804600;CGSNL Gene Symbol=GLP3-9;CGSNL Gene Name=GERMIN-LIKE PROTEIN 3-9;Oryzabase Gene Symbol Synonym(s)=OsGLP3-9;Oryzabase Gene Name Synonym(s)=Germin-like protein 3-9;Note=Similar to Germin-like protein 3-7.;Transcript_evidence=AK248846 (DDBJ);ORF_evidence=NP_001051622.2 (RefSeq);Oryzabase=21426;TENOR=Os03t0804600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	33589349	33589411	.	-	.	Parent=Os03t0804600-00
Chr03	irgsp1_rep	CDS	33588905	33589348	.	-	0	Parent=Os03t0804600-00
Chr03	irgsp1_rep	three_prime_UTR	33588552	33588904	.	-	.	Parent=Os03t0804600-00
Chr03	irgsp1_rep	mRNA	33591195	33591872	.	+	.	ID=Os03t0804700-00;Name=Os03t0804700-00;Locus_id=Os03g0804700;CGSNL Gene Symbol=GLP3-8;CGSNL Gene Name=GERMIN-LIKE PROTEIN 3-8;Oryzabase Gene Symbol Synonym(s)=OsGLP3-8;Oryzabase Gene Name Synonym(s)=Germin-like protein 3-8;Note=Germin-like protein 3-8.;Transcript_evidence=Q75HJ4 (UniProt);ORF_evidence=Q75HJ4 (UniProt);GO=Cellular Component: apoplast (GO:0048046),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),Germin%2C manganese binding site (IPR019780);Oryzabase=21425;TENOR=Os03t0804700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	33591195	33591872	.	+	0	Parent=Os03t0804700-00
Chr03	irgsp1_rep	mRNA	33592786	33598072	.	+	.	ID=Os03t0804800-01;Name=Os03t0804800-01;Locus_id=Os03g0804800;Note=Similar to Cct8-prov protein.;Transcript_evidence=AK100651 (DDBJ%2C Best hit);ORF_evidence=C6F1N7 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: cellular protein metabolic process (GO:0044267),Molecular Function: ATP binding (GO:0005524),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Chaperonin TCP-1%2C conserved site (IPR002194),Chaperonin Cpn60/TCP-1 (IPR002423),T-complex protein 1%2C theta subunit (IPR012721),Chaperone%2C tailless complex polypeptide 1 (IPR017998);NIAS_FLcDNA=J023111D11;Expression=AK100651;TENOR=Os03t0804800-01;KEGG=Os03t0804800-01
Chr03	irgsp1_rep	five_prime_UTR	33592786	33592884	.	+	.	Parent=Os03t0804800-01
Chr03	irgsp1_rep	CDS	33592885	33593038	.	+	0	Parent=Os03t0804800-01
Chr03	irgsp1_rep	CDS	33593575	33593837	.	+	2	Parent=Os03t0804800-01
Chr03	irgsp1_rep	CDS	33593938	33594084	.	+	0	Parent=Os03t0804800-01
Chr03	irgsp1_rep	CDS	33594167	33594328	.	+	0	Parent=Os03t0804800-01
Chr03	irgsp1_rep	CDS	33595095	33595172	.	+	0	Parent=Os03t0804800-01
Chr03	irgsp1_rep	CDS	33595743	33595876	.	+	0	Parent=Os03t0804800-01
Chr03	irgsp1_rep	CDS	33596116	33596188	.	+	1	Parent=Os03t0804800-01
Chr03	irgsp1_rep	CDS	33596266	33596343	.	+	0	Parent=Os03t0804800-01
Chr03	irgsp1_rep	CDS	33596416	33596538	.	+	0	Parent=Os03t0804800-01
Chr03	irgsp1_rep	CDS	33596637	33596731	.	+	0	Parent=Os03t0804800-01
Chr03	irgsp1_rep	CDS	33597137	33597346	.	+	1	Parent=Os03t0804800-01
Chr03	irgsp1_rep	CDS	33597529	33597586	.	+	1	Parent=Os03t0804800-01
Chr03	irgsp1_rep	CDS	33597682	33597747	.	+	0	Parent=Os03t0804800-01
Chr03	irgsp1_rep	three_prime_UTR	33597748	33598072	.	+	.	Parent=Os03t0804800-01
Chr03	irgsp1_rep	mRNA	33599055	33600984	.	-	.	ID=Os03t0804900-00;Name=Os03t0804900-00;Locus_id=Os03g0804900;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK373315 (DDBJ);ORF_evidence=NP_001051624.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os03t0804900-00;KEGG=Os03t0804900-00
Chr03	irgsp1_rep	CDS	33600427	33600984	.	-	0	Parent=Os03t0804900-00
Chr03	irgsp1_rep	CDS	33599835	33600338	.	-	0	Parent=Os03t0804900-00
Chr03	irgsp1_rep	CDS	33599055	33599615	.	-	0	Parent=Os03t0804900-00
Chr03	irgsp1_rep	mRNA	33605547	33612423	.	+	.	ID=Os03t0805100-01;Name=Os03t0805100-01;Locus_id=Os03g0805100;CGSNL Gene Symbol=CCA;Oryzabase Gene Symbol Synonym(s)=OsCCA;Oryzabase Gene Name Synonym(s)=cinnamoyl-CoA;Note=Similar to Squalene synthase (EC 2.5.1.21).;Transcript_evidence=AK242592 (DDBJ%2C Best hit);ORF_evidence=NP_001104839.1 (RefSeq);GO=Biological Process: lipid biosynthetic process (GO:0008610),Biological Process: biosynthetic process (GO:0009058),Cellular Component: integral to membrane (GO:0016021),Molecular Function: farnesyl-diphosphate farnesyltransferase activity (GO:0004310),Molecular Function: transferase activity (GO:0016740),Molecular Function: transferase activity%2C transferring alkyl or aryl (other than methyl) groups (GO:0016765);InterPro=Squalene/phytoene synthase (IPR002060),Farnesyl-diphosphate farnesyltransferase (IPR006449),Terpenoid synthase (IPR008949),Squalene/phytoene synthase%2C conserved site (IPR019845);NIAS_FLcDNA=J090011P14;Oryzabase=23751;TENOR=Os03t0805100-01;KEGG=Os03t0805100-01 (EC:2.5.1.21)
Chr03	irgsp1_rep	five_prime_UTR	33605547	33605594	.	+	.	Parent=Os03t0805100-01
Chr03	irgsp1_rep	CDS	33605595	33605777	.	+	0	Parent=Os03t0805100-01
Chr03	irgsp1_rep	CDS	33605902	33605944	.	+	0	Parent=Os03t0805100-01
Chr03	irgsp1_rep	CDS	33606139	33606228	.	+	2	Parent=Os03t0805100-01
Chr03	irgsp1_rep	CDS	33606333	33606408	.	+	2	Parent=Os03t0805100-01
Chr03	irgsp1_rep	CDS	33607085	33607154	.	+	1	Parent=Os03t0805100-01
Chr03	irgsp1_rep	CDS	33608138	33608281	.	+	0	Parent=Os03t0805100-01
Chr03	irgsp1_rep	CDS	33608368	33608472	.	+	0	Parent=Os03t0805100-01
Chr03	irgsp1_rep	CDS	33608910	33609056	.	+	0	Parent=Os03t0805100-01
Chr03	irgsp1_rep	CDS	33610408	33610483	.	+	0	Parent=Os03t0805100-01
Chr03	irgsp1_rep	CDS	33611140	33611228	.	+	2	Parent=Os03t0805100-01
Chr03	irgsp1_rep	CDS	33611592	33611683	.	+	0	Parent=Os03t0805100-01
Chr03	irgsp1_rep	CDS	33611765	33611804	.	+	1	Parent=Os03t0805100-01
Chr03	irgsp1_rep	CDS	33611889	33611945	.	+	0	Parent=Os03t0805100-01
Chr03	irgsp1_rep	three_prime_UTR	33611946	33611995	.	+	.	Parent=Os03t0805100-01
Chr03	irgsp1_rep	three_prime_UTR	33612100	33612423	.	+	.	Parent=Os03t0805100-01
Chr03	irgsp1_rep	mRNA	33612511	33617779	.	-	.	ID=Os03t0805200-01;Name=Os03t0805200-01;Locus_id=Os03g0805200;Oryzabase Gene Symbol Synonym(s)=OsRH37;Oryzabase Gene Name Synonym(s)=RNA helicase 37;Note=Similar to RNA helicase (Fragment).;Transcript_evidence=AK066048 (DDBJ%2C Best hit);ORF_evidence=Q75HJ0 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=J013048C24;Oryzabase=19147;Expression=AK066048;TENOR=Os03t0805200-01;KEGG=Os03t0805200-01 (EC:3.6.4.13)
Chr03	irgsp1_rep	five_prime_UTR	33617611	33617779	.	-	.	Parent=Os03t0805200-01
Chr03	irgsp1_rep	five_prime_UTR	33616538	33616586	.	-	.	Parent=Os03t0805200-01
Chr03	irgsp1_rep	CDS	33615737	33616537	.	-	0	Parent=Os03t0805200-01
Chr03	irgsp1_rep	CDS	33615562	33615645	.	-	0	Parent=Os03t0805200-01
Chr03	irgsp1_rep	CDS	33614719	33614961	.	-	0	Parent=Os03t0805200-01
Chr03	irgsp1_rep	CDS	33614176	33614343	.	-	0	Parent=Os03t0805200-01
Chr03	irgsp1_rep	CDS	33613884	33613997	.	-	0	Parent=Os03t0805200-01
Chr03	irgsp1_rep	CDS	33612836	33613339	.	-	0	Parent=Os03t0805200-01
Chr03	irgsp1_rep	three_prime_UTR	33612511	33612835	.	-	.	Parent=Os03t0805200-01
Chr03	irgsp1_rep	mRNA	33621970	33626503	.	+	.	ID=Os03t0805300-01;Name=Os03t0805300-01;Locus_id=Os03g0805300;Oryzabase Gene Symbol Synonym(s)=OsPP56%2C PP56%2C OsPP2Ac-2%2C PP2Ac-2;Oryzabase Gene Name Synonym(s)=Protein phosphatase 56%2C Phosphatase 2A isoform 2;Note=Similar to Phosphoprotein phosphatase 2A isoform 4.;Transcript_evidence=AK060885 (DDBJ%2C Best hit),AK099257 (DDBJ%2C Best hit),AK100350 (DDBJ%2C Best hit);ORF_evidence=Q10BT5 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Metallophosphoesterase domain (IPR004843),Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (IPR006186);NIAS_FLcDNA=001-035-B04,J023001E07,J023083A10;Oryzabase=18640;TENOR=Os03t0805300-01
Chr03	irgsp1_rep	five_prime_UTR	33621970	33622084	.	+	.	Parent=Os03t0805300-01
Chr03	irgsp1_rep	CDS	33622085	33622159	.	+	0	Parent=Os03t0805300-01
Chr03	irgsp1_rep	CDS	33622756	33622812	.	+	0	Parent=Os03t0805300-01
Chr03	irgsp1_rep	CDS	33623812	33623895	.	+	0	Parent=Os03t0805300-01
Chr03	irgsp1_rep	CDS	33623989	33624060	.	+	0	Parent=Os03t0805300-01
Chr03	irgsp1_rep	CDS	33624182	33624253	.	+	0	Parent=Os03t0805300-01
Chr03	irgsp1_rep	CDS	33624425	33624465	.	+	0	Parent=Os03t0805300-01
Chr03	irgsp1_rep	CDS	33624931	33624997	.	+	1	Parent=Os03t0805300-01
Chr03	irgsp1_rep	CDS	33625087	33625278	.	+	0	Parent=Os03t0805300-01
Chr03	irgsp1_rep	CDS	33625361	33625450	.	+	0	Parent=Os03t0805300-01
Chr03	irgsp1_rep	CDS	33625525	33625632	.	+	0	Parent=Os03t0805300-01
Chr03	irgsp1_rep	CDS	33625927	33625992	.	+	0	Parent=Os03t0805300-01
Chr03	irgsp1_rep	three_prime_UTR	33625993	33626503	.	+	.	Parent=Os03t0805300-01
Chr03	irgsp1_rep	mRNA	33624920	33625992	.	-	.	ID=Os03t0805350-00;Name=Os03t0805350-00;Locus_id=Os03g0805350;Note=Hypothetical protein.;Transcript_evidence=BT018461 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0805350-00
Chr03	irgsp1_rep	five_prime_UTR	33625922	33625992	.	-	.	Parent=Os03t0805350-00
Chr03	irgsp1_rep	five_prime_UTR	33625518	33625627	.	-	.	Parent=Os03t0805350-00
Chr03	irgsp1_rep	five_prime_UTR	33625356	33625445	.	-	.	Parent=Os03t0805350-00
Chr03	irgsp1_rep	CDS	33625340	33625355	.	-	0	Parent=Os03t0805350-00
Chr03	irgsp1_rep	CDS	33625063	33625258	.	-	2	Parent=Os03t0805350-00
Chr03	irgsp1_rep	CDS	33624960	33624978	.	-	1	Parent=Os03t0805350-00
Chr03	irgsp1_rep	three_prime_UTR	33624920	33624959	.	-	.	Parent=Os03t0805350-00
Chr03	irgsp1_rep	mRNA	33627419	33630285	.	-	.	ID=Os03t0805400-01;Name=Os03t0805400-01;Locus_id=Os03g0805400;Note=Phosphatidic acid phosphatase type 2/haloperoxidase domain containing protein.;Transcript_evidence=AK071708 (DDBJ%2C Best hit);ORF_evidence=NP_001151171.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824);InterPro=Phosphatidic acid phosphatase type 2/haloperoxidase (IPR000326),Phosphatidic acid phosphatase/chloroperoxidase%2C N-terminal (IPR016118);NIAS_FLcDNA=J023111M04;Expression=AK071708;TENOR=Os03t0805400-01;KEGG=Os03t0805400-01
Chr03	irgsp1_rep	five_prime_UTR	33630007	33630285	.	-	.	Parent=Os03t0805400-01
Chr03	irgsp1_rep	CDS	33629818	33630006	.	-	0	Parent=Os03t0805400-01
Chr03	irgsp1_rep	CDS	33629468	33629563	.	-	0	Parent=Os03t0805400-01
Chr03	irgsp1_rep	CDS	33629194	33629268	.	-	0	Parent=Os03t0805400-01
Chr03	irgsp1_rep	CDS	33628976	33629106	.	-	0	Parent=Os03t0805400-01
Chr03	irgsp1_rep	CDS	33628758	33628858	.	-	1	Parent=Os03t0805400-01
Chr03	irgsp1_rep	CDS	33628521	33628649	.	-	2	Parent=Os03t0805400-01
Chr03	irgsp1_rep	CDS	33628322	33628437	.	-	2	Parent=Os03t0805400-01
Chr03	irgsp1_rep	CDS	33627685	33628095	.	-	0	Parent=Os03t0805400-01
Chr03	irgsp1_rep	three_prime_UTR	33627419	33627684	.	-	.	Parent=Os03t0805400-01
Chr03	irgsp1_rep	mRNA	33627374	33630144	.	-	.	ID=Os03t0805400-02;Name=Os03t0805400-02;Locus_id=Os03g0805400;Note=Phosphatidic acid phosphatase type 2/haloperoxidase domain containing protein.;Transcript_evidence=AK102189 (DDBJ%2C Best hit);ORF_evidence=NP_001151171.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824);InterPro=Phosphatidic acid phosphatase type 2/haloperoxidase (IPR000326),Phosphatidic acid phosphatase/chloroperoxidase%2C N-terminal (IPR016118);NIAS_FLcDNA=J033086P22;Expression=AK102189;TENOR=Os03t0805400-02;KEGG=Os03t0805400-02
Chr03	irgsp1_rep	five_prime_UTR	33630007	33630144	.	-	.	Parent=Os03t0805400-02
Chr03	irgsp1_rep	CDS	33629818	33630006	.	-	0	Parent=Os03t0805400-02
Chr03	irgsp1_rep	CDS	33629468	33629563	.	-	0	Parent=Os03t0805400-02
Chr03	irgsp1_rep	CDS	33629194	33629268	.	-	0	Parent=Os03t0805400-02
Chr03	irgsp1_rep	CDS	33628976	33629106	.	-	0	Parent=Os03t0805400-02
Chr03	irgsp1_rep	CDS	33628758	33628858	.	-	1	Parent=Os03t0805400-02
Chr03	irgsp1_rep	CDS	33628521	33628649	.	-	2	Parent=Os03t0805400-02
Chr03	irgsp1_rep	CDS	33628322	33628437	.	-	2	Parent=Os03t0805400-02
Chr03	irgsp1_rep	CDS	33627685	33628095	.	-	0	Parent=Os03t0805400-02
Chr03	irgsp1_rep	three_prime_UTR	33627374	33627684	.	-	.	Parent=Os03t0805400-02
Chr03	irgsp1_rep	mRNA	33627414	33628650	.	-	.	ID=Os03t0805400-03;Name=Os03t0805400-03;Locus_id=Os03g0805400;Note=Similar to phosphoric ester hydrolase.;Transcript_evidence=AK060174 (DDBJ%2C Best hit);ORF_evidence=NP_001151171.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824);InterPro=Phosphatidic acid phosphatase type 2/haloperoxidase (IPR000326),Phosphatidic acid phosphatase/chloroperoxidase%2C N-terminal (IPR016118);NIAS_FLcDNA=006-311-H07;Expression=AK060174;TENOR=Os03t0805400-03;KEGG=Os03t0805400-03
Chr03	irgsp1_rep	CDS	33628521	33628650	.	-	0	Parent=Os03t0805400-03
Chr03	irgsp1_rep	CDS	33628322	33628437	.	-	2	Parent=Os03t0805400-03
Chr03	irgsp1_rep	CDS	33627685	33628095	.	-	0	Parent=Os03t0805400-03
Chr03	irgsp1_rep	three_prime_UTR	33627414	33627684	.	-	.	Parent=Os03t0805400-03
Chr03	irgsp1_rep	mRNA	33631931	33636872	.	-	.	ID=Os03t0805500-01;Name=Os03t0805500-01;Locus_id=Os03g0805500;Note=Similar to AAE18 (ACYL-ACTIVATING ENZYME 18)%3B catalytic/ ligase.;Transcript_evidence=AK067857 (DDBJ%2C Best hit);ORF_evidence=NP_175929.3 (RefSeq);NIAS_FLcDNA=J013121L24;TENOR=Os03t0805500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	33636751	33636872	.	-	.	Parent=Os03t0805500-01
Chr03	irgsp1_rep	CDS	33636735	33636750	.	-	0	Parent=Os03t0805500-01
Chr03	irgsp1_rep	CDS	33636451	33636610	.	-	2	Parent=Os03t0805500-01
Chr03	irgsp1_rep	CDS	33636083	33636212	.	-	1	Parent=Os03t0805500-01
Chr03	irgsp1_rep	CDS	33635919	33635933	.	-	0	Parent=Os03t0805500-01
Chr03	irgsp1_rep	three_prime_UTR	33635659	33635918	.	-	.	Parent=Os03t0805500-01
Chr03	irgsp1_rep	three_prime_UTR	33635347	33635548	.	-	.	Parent=Os03t0805500-01
Chr03	irgsp1_rep	three_prime_UTR	33635228	33635268	.	-	.	Parent=Os03t0805500-01
Chr03	irgsp1_rep	three_prime_UTR	33634776	33634898	.	-	.	Parent=Os03t0805500-01
Chr03	irgsp1_rep	three_prime_UTR	33634563	33634636	.	-	.	Parent=Os03t0805500-01
Chr03	irgsp1_rep	three_prime_UTR	33634254	33634474	.	-	.	Parent=Os03t0805500-01
Chr03	irgsp1_rep	three_prime_UTR	33633592	33633686	.	-	.	Parent=Os03t0805500-01
Chr03	irgsp1_rep	three_prime_UTR	33633294	33633510	.	-	.	Parent=Os03t0805500-01
Chr03	irgsp1_rep	three_prime_UTR	33633094	33633219	.	-	.	Parent=Os03t0805500-01
Chr03	irgsp1_rep	three_prime_UTR	33632846	33632944	.	-	.	Parent=Os03t0805500-01
Chr03	irgsp1_rep	three_prime_UTR	33632546	33632755	.	-	.	Parent=Os03t0805500-01
Chr03	irgsp1_rep	three_prime_UTR	33631931	33632445	.	-	.	Parent=Os03t0805500-01
Chr03	irgsp1_rep	mRNA	33638650	33641123	.	+	.	ID=Os03t0805600-00;Name=Os03t0805600-00;Locus_id=Os03g0805600;Note=Similar to pheophorbide a oxygenase.;Transcript_evidence=CT835283 (DDBJ%2C Best hit);ORF_evidence=B6ST74 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=Rieske [2Fe-2S] iron-sulphur domain (IPR017941);TENOR=Os03t0805600-00;KEGG=Os03t0805600-00
Chr03	irgsp1_rep	five_prime_UTR	33638650	33638664	.	+	.	Parent=Os03t0805600-00
Chr03	irgsp1_rep	CDS	33638665	33639090	.	+	0	Parent=Os03t0805600-00
Chr03	irgsp1_rep	CDS	33640715	33640906	.	+	0	Parent=Os03t0805600-00
Chr03	irgsp1_rep	three_prime_UTR	33640907	33641123	.	+	.	Parent=Os03t0805600-00
Chr03	irgsp1_rep	mRNA	33645107	33647519	.	+	.	ID=Os03t0805700-00;Name=Os03t0805700-00;Locus_id=Os03g0805700;Note=Similar to Pheophorbide a oxygenase.;Transcript_evidence=EU955939 (DDBJ);ORF_evidence=B6ST74 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: chlorophyllide a oxygenase [overall] activity (GO:0010277),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=Pheophorbide a oxygenase (IPR013626),Rieske [2Fe-2S] iron-sulphur domain (IPR017941);TENOR=Os03t0805700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	33645107	33645109	.	+	.	Parent=Os03t0805700-00
Chr03	irgsp1_rep	CDS	33645110	33645631	.	+	0	Parent=Os03t0805700-00
Chr03	irgsp1_rep	CDS	33645935	33646122	.	+	0	Parent=Os03t0805700-00
Chr03	irgsp1_rep	CDS	33646211	33646309	.	+	1	Parent=Os03t0805700-00
Chr03	irgsp1_rep	CDS	33646437	33646568	.	+	1	Parent=Os03t0805700-00
Chr03	irgsp1_rep	CDS	33646662	33646869	.	+	1	Parent=Os03t0805700-00
Chr03	irgsp1_rep	CDS	33646959	33647146	.	+	0	Parent=Os03t0805700-00
Chr03	irgsp1_rep	CDS	33647258	33647519	.	+	1	Parent=Os03t0805700-00
Chr03	irgsp1_rep	mRNA	33645107	33647519	.	-	.	ID=Os03t0805733-00;Name=Os03t0805733-00;Locus_id=Os03g0805733;Note=Hypothetical protein.;Transcript_evidence=tplb0031c13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0805733-00
Chr03	irgsp1_rep	five_prime_UTR	33647256	33647519	.	-	.	Parent=Os03t0805733-00
Chr03	irgsp1_rep	five_prime_UTR	33646941	33647144	.	-	.	Parent=Os03t0805733-00
Chr03	irgsp1_rep	five_prime_UTR	33646651	33646854	.	-	.	Parent=Os03t0805733-00
Chr03	irgsp1_rep	five_prime_UTR	33646437	33646581	.	-	.	Parent=Os03t0805733-00
Chr03	irgsp1_rep	five_prime_UTR	33646218	33646316	.	-	.	Parent=Os03t0805733-00
Chr03	irgsp1_rep	five_prime_UTR	33645941	33646133	.	-	.	Parent=Os03t0805733-00
Chr03	irgsp1_rep	five_prime_UTR	33645587	33645636	.	-	.	Parent=Os03t0805733-00
Chr03	irgsp1_rep	CDS	33645203	33645586	.	-	0	Parent=Os03t0805733-00
Chr03	irgsp1_rep	three_prime_UTR	33645107	33645202	.	-	.	Parent=Os03t0805733-00
Chr03	irgsp1_rep	mRNA	33649342	33653755	.	-	.	ID=Os03t0805766-00;Name=Os03t0805766-00;Locus_id=Os03g0805766;Note=Hypothetical protein.;Transcript_evidence=tplb0031c13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0805766-00
Chr03	irgsp1_rep	five_prime_UTR	33653495	33653755	.	-	.	Parent=Os03t0805766-00
Chr03	irgsp1_rep	five_prime_UTR	33653165	33653364	.	-	.	Parent=Os03t0805766-00
Chr03	irgsp1_rep	five_prime_UTR	33652406	33652585	.	-	.	Parent=Os03t0805766-00
Chr03	irgsp1_rep	five_prime_UTR	33650800	33650962	.	-	.	Parent=Os03t0805766-00
Chr03	irgsp1_rep	five_prime_UTR	33650600	33650655	.	-	.	Parent=Os03t0805766-00
Chr03	irgsp1_rep	CDS	33650567	33650599	.	-	0	Parent=Os03t0805766-00
Chr03	irgsp1_rep	CDS	33649968	33650165	.	-	0	Parent=Os03t0805766-00
Chr03	irgsp1_rep	CDS	33649497	33649886	.	-	0	Parent=Os03t0805766-00
Chr03	irgsp1_rep	three_prime_UTR	33649342	33649496	.	-	.	Parent=Os03t0805766-00
Chr03	irgsp1_rep	mRNA	33650872	33652710	.	+	.	ID=Os03t0805800-01;Name=Os03t0805800-01;Locus_id=Os03g0805800;Note=Similar to cDNA clone:001-207-E12%2C full insert sequence.;Transcript_evidence=AK242475 (DDBJ%2C Best hit);ORF_evidence=B7EYY8 (UniProt);NIAS_FLcDNA=J080303E02;TENOR=Os03t0805800-01;KEGG=Os03t0805800-01
Chr03	irgsp1_rep	five_prime_UTR	33650872	33651423	.	+	.	Parent=Os03t0805800-01
Chr03	irgsp1_rep	CDS	33651424	33651792	.	+	0	Parent=Os03t0805800-01
Chr03	irgsp1_rep	three_prime_UTR	33651793	33652710	.	+	.	Parent=Os03t0805800-01
Chr03	irgsp1_rep	mRNA	33659565	33661954	.	-	.	ID=Os03t0805850-00;Name=Os03t0805850-00;Locus_id=Os03g0805850;Note=Hypothetical protein.;Transcript_evidence=tplb0031c13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0805850-00
Chr03	irgsp1_rep	five_prime_UTR	33661660	33661954	.	-	.	Parent=Os03t0805850-00
Chr03	irgsp1_rep	five_prime_UTR	33661321	33661489	.	-	.	Parent=Os03t0805850-00
Chr03	irgsp1_rep	five_prime_UTR	33661025	33661197	.	-	.	Parent=Os03t0805850-00
Chr03	irgsp1_rep	five_prime_UTR	33660772	33660919	.	-	.	Parent=Os03t0805850-00
Chr03	irgsp1_rep	five_prime_UTR	33660534	33660648	.	-	.	Parent=Os03t0805850-00
Chr03	irgsp1_rep	five_prime_UTR	33660149	33660336	.	-	.	Parent=Os03t0805850-00
Chr03	irgsp1_rep	five_prime_UTR	33659884	33660074	.	-	.	Parent=Os03t0805850-00
Chr03	irgsp1_rep	CDS	33659565	33659883	.	-	0	Parent=Os03t0805850-00
Chr03	irgsp1_rep	mRNA	33659567	33662028	.	+	.	ID=Os03t0805900-00;Name=Os03t0805900-00;Locus_id=Os03g0805900;Note=Similar to Pheophorbide a oxygenase.;Transcript_evidence=AK358479 (DDBJ);ORF_evidence=B6ST74 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=Rieske [2Fe-2S] iron-sulphur domain (IPR017941);TENOR=Os03t0805900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	33659567	33660079	.	+	0	Parent=Os03t0805900-00
Chr03	irgsp1_rep	CDS	33660158	33660345	.	+	0	Parent=Os03t0805900-00
Chr03	irgsp1_rep	CDS	33660542	33660644	.	+	1	Parent=Os03t0805900-00
Chr03	irgsp1_rep	CDS	33660761	33660799	.	+	0	Parent=Os03t0805900-00
Chr03	irgsp1_rep	three_prime_UTR	33660800	33660915	.	+	.	Parent=Os03t0805900-00
Chr03	irgsp1_rep	three_prime_UTR	33661040	33661219	.	+	.	Parent=Os03t0805900-00
Chr03	irgsp1_rep	three_prime_UTR	33661340	33661527	.	+	.	Parent=Os03t0805900-00
Chr03	irgsp1_rep	three_prime_UTR	33661696	33662028	.	+	.	Parent=Os03t0805900-00
Chr03	irgsp1_rep	mRNA	33680875	33687466	.	-	.	ID=Os03t0806100-00;Name=Os03t0806100-00;Locus_id=Os03g0806100;Note=Hypothetical protein.;Transcript_evidence=tplb0031c13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0806100-00
Chr03	irgsp1_rep	five_prime_UTR	33687218	33687466	.	-	.	Parent=Os03t0806100-00
Chr03	irgsp1_rep	five_prime_UTR	33686941	33687111	.	-	.	Parent=Os03t0806100-00
Chr03	irgsp1_rep	five_prime_UTR	33686582	33686795	.	-	.	Parent=Os03t0806100-00
Chr03	irgsp1_rep	five_prime_UTR	33685794	33685924	.	-	.	Parent=Os03t0806100-00
Chr03	irgsp1_rep	five_prime_UTR	33684485	33684606	.	-	.	Parent=Os03t0806100-00
Chr03	irgsp1_rep	CDS	33684482	33684484	.	-	0	Parent=Os03t0806100-00
Chr03	irgsp1_rep	CDS	33682440	33682616	.	-	0	Parent=Os03t0806100-00
Chr03	irgsp1_rep	CDS	33682077	33682334	.	-	0	Parent=Os03t0806100-00
Chr03	irgsp1_rep	CDS	33680875	33681113	.	-	0	Parent=Os03t0806100-00
Chr03	irgsp1_rep	mRNA	33680875	33687737	.	+	.	ID=Os03t0806300-00;Name=Os03t0806300-00;Locus_id=Os03g0806300;Note=Pheophorbide a oxygenase domain containing protein.;Transcript_evidence=AK376575 (DDBJ);ORF_evidence=Q84M41 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: chlorophyllide a oxygenase [overall] activity (GO:0010277),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=Pheophorbide a oxygenase (IPR013626),Rieske [2Fe-2S] iron-sulphur domain (IPR017941);TENOR=Os03t0806300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	33680875	33680996	.	+	.	Parent=Os03t0806300-00
Chr03	irgsp1_rep	CDS	33680997	33681113	.	+	0	Parent=Os03t0806300-00
Chr03	irgsp1_rep	CDS	33682077	33682331	.	+	0	Parent=Os03t0806300-00
Chr03	irgsp1_rep	CDS	33682434	33682627	.	+	0	Parent=Os03t0806300-00
Chr03	irgsp1_rep	CDS	33684495	33684593	.	+	1	Parent=Os03t0806300-00
Chr03	irgsp1_rep	CDS	33685774	33685930	.	+	1	Parent=Os03t0806300-00
Chr03	irgsp1_rep	CDS	33686585	33686779	.	+	0	Parent=Os03t0806300-00
Chr03	irgsp1_rep	CDS	33686924	33687120	.	+	0	Parent=Os03t0806300-00
Chr03	irgsp1_rep	CDS	33687227	33687737	.	+	1	Parent=Os03t0806300-00
Chr03	irgsp1_rep	mRNA	33688013	33692314	.	-	.	ID=Os03t0806400-01;Name=Os03t0806400-01;Locus_id=Os03g0806400;Note=Similar to Elongation factor P family protein%2C expressed.;Transcript_evidence=AK073074 (DDBJ%2C Best hit);ORF_evidence=Q10BS5 (UniProt);NIAS_FLcDNA=J033015H04;TENOR=Os03t0806400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	33692249	33692314	.	-	.	Parent=Os03t0806400-01
Chr03	irgsp1_rep	CDS	33692045	33692248	.	-	0	Parent=Os03t0806400-01
Chr03	irgsp1_rep	CDS	33691420	33691470	.	-	0	Parent=Os03t0806400-01
Chr03	irgsp1_rep	three_prime_UTR	33691337	33691419	.	-	.	Parent=Os03t0806400-01
Chr03	irgsp1_rep	three_prime_UTR	33691167	33691217	.	-	.	Parent=Os03t0806400-01
Chr03	irgsp1_rep	three_prime_UTR	33690503	33690944	.	-	.	Parent=Os03t0806400-01
Chr03	irgsp1_rep	three_prime_UTR	33690320	33690387	.	-	.	Parent=Os03t0806400-01
Chr03	irgsp1_rep	three_prime_UTR	33688447	33689835	.	-	.	Parent=Os03t0806400-01
Chr03	irgsp1_rep	three_prime_UTR	33688013	33688280	.	-	.	Parent=Os03t0806400-01
Chr03	irgsp1_rep	mRNA	33693171	33695957	.	+	.	ID=Os03t0806500-01;Name=Os03t0806500-01;Locus_id=Os03g0806500;Oryzabase Gene Symbol Synonym(s)=OsAPRL5;Oryzabase Gene Name Synonym(s)=adenosine 5'-phosphosulfate reductase-like protein 5;Note=Thioredoxin domain 2 containing protein.;Transcript_evidence=AK073308 (DDBJ%2C Best hit),AK100198 (DDBJ%2C Best hit);ORF_evidence=Q84M47 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454);InterPro=Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766);NIAS_FLcDNA=J033024I21,J023037N20;Oryzabase=14072;Expression=AK073308;TENOR=Os03t0806500-01;KEGG=Os03t0806500-01
Chr03	irgsp1_rep	five_prime_UTR	33693171	33693189	.	+	.	Parent=Os03t0806500-01
Chr03	irgsp1_rep	CDS	33693190	33693372	.	+	0	Parent=Os03t0806500-01
Chr03	irgsp1_rep	CDS	33694469	33694650	.	+	0	Parent=Os03t0806500-01
Chr03	irgsp1_rep	CDS	33694759	33694883	.	+	1	Parent=Os03t0806500-01
Chr03	irgsp1_rep	CDS	33695272	33695687	.	+	2	Parent=Os03t0806500-01
Chr03	irgsp1_rep	three_prime_UTR	33695688	33695957	.	+	.	Parent=Os03t0806500-01
Chr03	irgsp1_rep	mRNA	33697176	33698442	.	+	.	ID=Os03t0806600-01;Name=Os03t0806600-01;Locus_id=Os03g0806600;Note=Conserved hypothetical protein.;Transcript_evidence=AK070959 (DDBJ%2C Best hit);ORF_evidence=B9F6V2 (UniProt);NIAS_FLcDNA=J023067J19;Expression=AK070959;TENOR=Os03t0806600-01;KEGG=Os03t0806600-01
Chr03	irgsp1_rep	five_prime_UTR	33697176	33697183	.	+	.	Parent=Os03t0806600-01
Chr03	irgsp1_rep	CDS	33697184	33697301	.	+	0	Parent=Os03t0806600-01
Chr03	irgsp1_rep	CDS	33697401	33697855	.	+	2	Parent=Os03t0806600-01
Chr03	irgsp1_rep	CDS	33698137	33698253	.	+	0	Parent=Os03t0806600-01
Chr03	irgsp1_rep	three_prime_UTR	33698254	33698442	.	+	.	Parent=Os03t0806600-01
Chr03	irgsp1_rep	mRNA	33711473	33713542	.	+	.	ID=Os03t0806700-01;Name=Os03t0806700-01;Locus_id=Os03g0806700;Note=Protein of unknown function DUF868%2C plant family protein.;Transcript_evidence=AK067603 (DDBJ%2C Best hit);ORF_evidence=XP_002466252.1 (RefSeq);InterPro=Protein of unknown function DUF868%2C plant (IPR008586);NIAS_FLcDNA=J013112L22;Expression=AK067603;TENOR=Os03t0806700-01;KEGG=Os03t0806700-01
Chr03	irgsp1_rep	five_prime_UTR	33711473	33712352	.	+	.	Parent=Os03t0806700-01
Chr03	irgsp1_rep	CDS	33712353	33713228	.	+	0	Parent=Os03t0806700-01
Chr03	irgsp1_rep	three_prime_UTR	33713229	33713542	.	+	.	Parent=Os03t0806700-01
Chr03	irgsp1_rep	mRNA	33711783	33713348	.	+	.	ID=Os03t0806700-02;Name=Os03t0806700-02;Locus_id=Os03g0806700;Note=Protein of unknown function DUF868%2C plant family protein.;Transcript_evidence=AK062034 (DDBJ%2C Best hit);ORF_evidence=XP_002466252.1 (RefSeq);InterPro=Protein of unknown function DUF868%2C plant (IPR008586);NIAS_FLcDNA=001-043-H06;Expression=AK062034;TENOR=Os03t0806700-02;KEGG=Os03t0806700-02
Chr03	irgsp1_rep	five_prime_UTR	33711783	33712352	.	+	.	Parent=Os03t0806700-02
Chr03	irgsp1_rep	CDS	33712353	33713228	.	+	0	Parent=Os03t0806700-02
Chr03	irgsp1_rep	three_prime_UTR	33713229	33713348	.	+	.	Parent=Os03t0806700-02
Chr03	irgsp1_rep	mRNA	33716907	33717666	.	+	.	ID=Os03t0806800-01;Name=Os03t0806800-01;Locus_id=Os03g0806800;Note=Conserved hypothetical protein.;Transcript_evidence=AK061623 (DDBJ%2C Best hit);ORF_evidence=A2XN54 (UniProt);NIAS_FLcDNA=001-034-B07;Expression=AK061623;TENOR=Os03t0806800-01;KEGG=Os03t0806800-01
Chr03	irgsp1_rep	five_prime_UTR	33716907	33717045	.	+	.	Parent=Os03t0806800-01
Chr03	irgsp1_rep	CDS	33717046	33717118	.	+	0	Parent=Os03t0806800-01
Chr03	irgsp1_rep	CDS	33717289	33717410	.	+	2	Parent=Os03t0806800-01
Chr03	irgsp1_rep	three_prime_UTR	33717411	33717666	.	+	.	Parent=Os03t0806800-01
Chr03	irgsp1_rep	mRNA	33716979	33717725	.	+	.	ID=Os03t0806800-02;Name=Os03t0806800-02;Locus_id=Os03g0806800;Note=Conserved hypothetical protein.;Transcript_evidence=AK120337 (DDBJ%2C Best hit);ORF_evidence=A2XN54 (UniProt);NIAS_FLcDNA=J013059N15;Expression=AK120337;TENOR=Os03t0806800-02;KEGG=Os03t0806800-02
Chr03	irgsp1_rep	five_prime_UTR	33716979	33717045	.	+	.	Parent=Os03t0806800-02
Chr03	irgsp1_rep	CDS	33717046	33717118	.	+	0	Parent=Os03t0806800-02
Chr03	irgsp1_rep	CDS	33717289	33717410	.	+	2	Parent=Os03t0806800-02
Chr03	irgsp1_rep	three_prime_UTR	33717411	33717725	.	+	.	Parent=Os03t0806800-02
Chr03	irgsp1_rep	mRNA	33718560	33720590	.	+	.	ID=Os03t0806900-01;Name=Os03t0806900-01;Locus_id=Os03g0806900;Note=Similar to CytoChrome-C reductase 14 kDa subunit (EC 1.10.2.2) (Fragment).;Transcript_evidence=AK121708 (DDBJ%2C Best hit);ORF_evidence=B6UBZ9 (UniProt);GO=Biological Process: mitochondrial electron transport%2C ubiquinol to cytoChrome c (GO:0006122),Molecular Function: ubiquinol-cytoChrome-c reductase activity (GO:0008121);InterPro=CytoChrome d ubiquinol oxidase%2C 14kDa subunit (IPR003197);NIAS_FLcDNA=J033075L07;Expression=AK121708;TENOR=Os03t0806900-01;KEGG=Os03t0806900-01 (EC:1.10.2.2)
Chr03	irgsp1_rep	five_prime_UTR	33718560	33718655	.	+	.	Parent=Os03t0806900-01
Chr03	irgsp1_rep	CDS	33718656	33718761	.	+	0	Parent=Os03t0806900-01
Chr03	irgsp1_rep	CDS	33718888	33719045	.	+	2	Parent=Os03t0806900-01
Chr03	irgsp1_rep	CDS	33719541	33719588	.	+	0	Parent=Os03t0806900-01
Chr03	irgsp1_rep	CDS	33720265	33720333	.	+	0	Parent=Os03t0806900-01
Chr03	irgsp1_rep	three_prime_UTR	33720334	33720590	.	+	.	Parent=Os03t0806900-01
Chr03	irgsp1_rep	mRNA	33722011	33724850	.	+	.	ID=Os03t0807000-01;Name=Os03t0807000-01;Locus_id=Os03g0807000;Note=Conserved hypothetical protein.;Transcript_evidence=AK241139 (DDBJ%2C Best hit);ORF_evidence=NP_001173679.1 (RefSeq);NIAS_FLcDNA=J065099H13;TENOR=Os03t0807000-01;KEGG=Os03t0807000-01
Chr03	irgsp1_rep	five_prime_UTR	33722011	33722208	.	+	.	Parent=Os03t0807000-01
Chr03	irgsp1_rep	CDS	33722209	33722580	.	+	0	Parent=Os03t0807000-01
Chr03	irgsp1_rep	three_prime_UTR	33722581	33724850	.	+	.	Parent=Os03t0807000-01
Chr03	irgsp1_rep	mRNA	33731566	33734958	.	+	.	ID=Os03t0807100-01;Name=Os03t0807100-01;Locus_id=Os03g0807100;Note=Protein of unknown function DUF239 domain containing protein.;Transcript_evidence=AK242472 (DDBJ%2C Best hit);ORF_evidence=B6TV70 (UniProt);InterPro=Glucoamylase%2C putatuve (IPR004314);NIAS_FLcDNA=J080303B22;TENOR=Os03t0807100-01;KEGG=Os03t0807100-01
Chr03	irgsp1_rep	five_prime_UTR	33731566	33731722	.	+	.	Parent=Os03t0807100-01
Chr03	irgsp1_rep	CDS	33731723	33731878	.	+	0	Parent=Os03t0807100-01
Chr03	irgsp1_rep	CDS	33732392	33732478	.	+	0	Parent=Os03t0807100-01
Chr03	irgsp1_rep	CDS	33732569	33732814	.	+	0	Parent=Os03t0807100-01
Chr03	irgsp1_rep	CDS	33732973	33733137	.	+	0	Parent=Os03t0807100-01
Chr03	irgsp1_rep	CDS	33733334	33733387	.	+	0	Parent=Os03t0807100-01
Chr03	irgsp1_rep	CDS	33733493	33733639	.	+	0	Parent=Os03t0807100-01
Chr03	irgsp1_rep	CDS	33734330	33734707	.	+	0	Parent=Os03t0807100-01
Chr03	irgsp1_rep	three_prime_UTR	33734708	33734958	.	+	.	Parent=Os03t0807100-01
Chr03	irgsp1_rep	mRNA	33732391	33734927	.	-	.	ID=Os03t0807150-00;Name=Os03t0807150-00;Locus_id=Os03g0807150;Note=Hypothetical protein.;Transcript_evidence=tplb0032e19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0807150-00
Chr03	irgsp1_rep	five_prime_UTR	33734348	33734927	.	-	.	Parent=Os03t0807150-00
Chr03	irgsp1_rep	five_prime_UTR	33733479	33733657	.	-	.	Parent=Os03t0807150-00
Chr03	irgsp1_rep	five_prime_UTR	33733331	33733380	.	-	.	Parent=Os03t0807150-00
Chr03	irgsp1_rep	five_prime_UTR	33732976	33733134	.	-	.	Parent=Os03t0807150-00
Chr03	irgsp1_rep	CDS	33732970	33732975	.	-	0	Parent=Os03t0807150-00
Chr03	irgsp1_rep	CDS	33732581	33732811	.	-	0	Parent=Os03t0807150-00
Chr03	irgsp1_rep	CDS	33732428	33732490	.	-	0	Parent=Os03t0807150-00
Chr03	irgsp1_rep	three_prime_UTR	33732391	33732427	.	-	.	Parent=Os03t0807150-00
Chr03	irgsp1_rep	mRNA	33737459	33739497	.	-	.	ID=Os03t0807200-01;Name=Os03t0807200-01;Locus_id=Os03g0807200;Note=Protein of unknown function DUF1639 family protein.;Transcript_evidence=AK103496 (DDBJ%2C Best hit),AK063932 (DDBJ%2C Best hit);ORF_evidence=A2XN58 (UniProt);InterPro=Protein of unknown function DUF1639 (IPR012438);NIAS_FLcDNA=J033131A04,001-123-D04;Expression=AK103496;TENOR=Os03t0807200-01;KEGG=Os03t0807200-01
Chr03	irgsp1_rep	five_prime_UTR	33739350	33739497	.	-	.	Parent=Os03t0807200-01
Chr03	irgsp1_rep	five_prime_UTR	33739032	33739045	.	-	.	Parent=Os03t0807200-01
Chr03	irgsp1_rep	CDS	33738799	33739031	.	-	0	Parent=Os03t0807200-01
Chr03	irgsp1_rep	CDS	33738434	33738707	.	-	1	Parent=Os03t0807200-01
Chr03	irgsp1_rep	CDS	33738247	33738324	.	-	0	Parent=Os03t0807200-01
Chr03	irgsp1_rep	CDS	33738110	33738157	.	-	0	Parent=Os03t0807200-01
Chr03	irgsp1_rep	three_prime_UTR	33737459	33738109	.	-	.	Parent=Os03t0807200-01
Chr03	irgsp1_rep	mRNA	33737458	33738155	.	-	.	ID=Os03t0807200-02;Name=Os03t0807200-02;Locus_id=Os03g0807200;Note=Non-protein coding transcript.;Transcript_evidence=AK122072 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J033117M21;TENOR=Os03t0807200-02
Chr03	irgsp1_rep	exon	33737458	33738155	.	-	.	Parent=Os03t0807200-02
Chr03	irgsp1_rep	mRNA	33744048	33749491	.	-	.	ID=Os03t0807400-01;Name=Os03t0807400-01;Locus_id=Os03g0807400;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK065345 (DDBJ%2C Best hit);ORF_evidence=Q84M45 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013008D19;TENOR=Os03t0807400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	33749490	33749491	.	-	.	Parent=Os03t0807400-01
Chr03	irgsp1_rep	CDS	33747861	33749489	.	-	0	Parent=Os03t0807400-01
Chr03	irgsp1_rep	three_prime_UTR	33747771	33747860	.	-	.	Parent=Os03t0807400-01
Chr03	irgsp1_rep	three_prime_UTR	33747487	33747670	.	-	.	Parent=Os03t0807400-01
Chr03	irgsp1_rep	three_prime_UTR	33745814	33746363	.	-	.	Parent=Os03t0807400-01
Chr03	irgsp1_rep	three_prime_UTR	33745454	33745561	.	-	.	Parent=Os03t0807400-01
Chr03	irgsp1_rep	three_prime_UTR	33745173	33745365	.	-	.	Parent=Os03t0807400-01
Chr03	irgsp1_rep	three_prime_UTR	33744968	33745084	.	-	.	Parent=Os03t0807400-01
Chr03	irgsp1_rep	three_prime_UTR	33744574	33744774	.	-	.	Parent=Os03t0807400-01
Chr03	irgsp1_rep	three_prime_UTR	33744048	33744380	.	-	.	Parent=Os03t0807400-01
Chr03	irgsp1_rep	mRNA	33752799	33756068	.	+	.	ID=Os03t0807500-00;Name=Os03t0807500-00;Locus_id=Os03g0807500;Oryzabase Gene Symbol Synonym(s)=OsSCL1;Oryzabase Gene Name Synonym(s)=stellacyanin-like protein 1;Note=Cupredoxin domain containing protein.;Transcript_evidence=CU406844 (DDBJ%2C Best hit);ORF_evidence=B6TG00 (UniProt);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);Oryzabase=9785;TENOR=Os03t0807500-00;KEGG=Os03t0807500-00
Chr03	irgsp1_rep	five_prime_UTR	33752799	33752911	.	+	.	Parent=Os03t0807500-00
Chr03	irgsp1_rep	CDS	33752912	33753081	.	+	0	Parent=Os03t0807500-00
Chr03	irgsp1_rep	CDS	33755313	33755772	.	+	1	Parent=Os03t0807500-00
Chr03	irgsp1_rep	three_prime_UTR	33755773	33756068	.	+	.	Parent=Os03t0807500-00
Chr03	irgsp1_rep	mRNA	33756172	33758645	.	-	.	ID=Os03t0807600-00;Name=Os03t0807600-00;Locus_id=Os03g0807600;CGSNL Gene Symbol=SMT1-2;CGSNL Gene Name=STEROL METHYLTRANSFERASE 1-2;Oryzabase Gene Symbol Synonym(s)=OsSMT1-2;Oryzabase Gene Name Synonym(s)=sterol methyltransferase 1-2%2C sterol-C24-methyltransferase 1-2;Note=Similar to Cyclopropane-fatty-acyl-phospholipid synthase family protein%2C expressed.;Transcript_evidence=CT835101 (DDBJ%2C Best hit);ORF_evidence=Q10BR3 (UniProt);GO=Biological Process: steroid biosynthetic process (GO:0006694),Biological Process: metabolic process (GO:0008152),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Methyltransferase type 11 (IPR013216),Sterol methyltransferase C-terminal (IPR013705);Oryzabase=22458;TENOR=Os03t0807600-00;KEGG=Os03t0807600-00 (EC:2.1.1.41)
Chr03	irgsp1_rep	five_prime_UTR	33758644	33758645	.	-	.	Parent=Os03t0807600-00
Chr03	irgsp1_rep	CDS	33758596	33758643	.	-	0	Parent=Os03t0807600-00
Chr03	irgsp1_rep	CDS	33758423	33758478	.	-	0	Parent=Os03t0807600-00
Chr03	irgsp1_rep	CDS	33758285	33758339	.	-	1	Parent=Os03t0807600-00
Chr03	irgsp1_rep	CDS	33758076	33758123	.	-	0	Parent=Os03t0807600-00
Chr03	irgsp1_rep	CDS	33757920	33758003	.	-	0	Parent=Os03t0807600-00
Chr03	irgsp1_rep	CDS	33757388	33757588	.	-	0	Parent=Os03t0807600-00
Chr03	irgsp1_rep	CDS	33756859	33756984	.	-	0	Parent=Os03t0807600-00
Chr03	irgsp1_rep	CDS	33756590	33756687	.	-	0	Parent=Os03t0807600-00
Chr03	irgsp1_rep	CDS	33756369	33756438	.	-	1	Parent=Os03t0807600-00
Chr03	irgsp1_rep	three_prime_UTR	33756172	33756368	.	-	.	Parent=Os03t0807600-00
Chr03	irgsp1_rep	mRNA	33765712	33767700	.	+	.	ID=Os03t0807700-01;Name=Os03t0807700-01;Locus_id=Os03g0807700;Note=Protein of unknown function DUF642 domain containing protein.;Transcript_evidence=AK059286 (DDBJ%2C Best hit);ORF_evidence=A2XN62 (UniProt);InterPro=Protein of unknown function DUF642 (IPR006946),Galactose-binding domain-like (IPR008979);NIAS_FLcDNA=001-025-D10;Expression=AK059286;TENOR=Os03t0807700-01;KEGG=Os03t0807700-01
Chr03	irgsp1_rep	five_prime_UTR	33765712	33765795	.	+	.	Parent=Os03t0807700-01
Chr03	irgsp1_rep	CDS	33765796	33765952	.	+	0	Parent=Os03t0807700-01
Chr03	irgsp1_rep	CDS	33766473	33766973	.	+	2	Parent=Os03t0807700-01
Chr03	irgsp1_rep	CDS	33767047	33767570	.	+	2	Parent=Os03t0807700-01
Chr03	irgsp1_rep	three_prime_UTR	33767571	33767700	.	+	.	Parent=Os03t0807700-01
Chr03	irgsp1_rep	mRNA	33766447	33767700	.	+	.	ID=Os03t0807700-02;Name=Os03t0807700-02;Locus_id=Os03g0807700;Note=Similar to predicted protein.;Transcript_evidence=AK121037 (DDBJ%2C Best hit);ORF_evidence=A2XN62 (UniProt);InterPro=Protein of unknown function DUF642 (IPR006946),Galactose-binding domain-like (IPR008979);NIAS_FLcDNA=J023050P15;Expression=AK121037;TENOR=Os03t0807700-02;KEGG=Os03t0807700-02
Chr03	irgsp1_rep	five_prime_UTR	33766447	33766447	.	+	.	Parent=Os03t0807700-02
Chr03	irgsp1_rep	CDS	33766448	33766973	.	+	0	Parent=Os03t0807700-02
Chr03	irgsp1_rep	CDS	33767047	33767570	.	+	2	Parent=Os03t0807700-02
Chr03	irgsp1_rep	three_prime_UTR	33767571	33767700	.	+	.	Parent=Os03t0807700-02
Chr03	irgsp1_rep	mRNA	33769018	33770893	.	+	.	ID=Os03t0807800-01;Name=Os03t0807800-01;Locus_id=Os03g0807800;Oryzabase Gene Symbol Synonym(s)=SUP44;Oryzabase Gene Name Synonym(s)=Omnipotent suppressor protein SUP44;Note=Similar to 40S ribosomal protein S2 (Fragment).;Transcript_evidence=AK064984 (DDBJ%2C Best hit);ORF_evidence=B6TNR8 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: small ribosomal subunit (GO:0015935),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S5 (IPR000851),Ribosomal protein S5%2C C-terminal (IPR005324),Ribosomal protein S5%2C eukaryotic/archaeal (IPR005711),Ribosomal protein S5%2C N-terminal (IPR013810),Double-stranded RNA-binding-like (IPR014720),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Ribosomal protein S5%2C N-terminal%2C conserved site (IPR018192),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=J013001C14;Oryzabase=17643;Expression=AK064984;TENOR=Os03t0807800-01;KEGG=Os03t0807800-01
Chr03	irgsp1_rep	five_prime_UTR	33769018	33769095	.	+	.	Parent=Os03t0807800-01
Chr03	irgsp1_rep	CDS	33769096	33769758	.	+	0	Parent=Os03t0807800-01
Chr03	irgsp1_rep	CDS	33770552	33770713	.	+	0	Parent=Os03t0807800-01
Chr03	irgsp1_rep	three_prime_UTR	33770714	33770893	.	+	.	Parent=Os03t0807800-01
Chr03	irgsp1_rep	mRNA	33771756	33773581	.	+	.	ID=Os03t0807900-01;Name=Os03t0807900-01;Locus_id=Os03g0807900;Note=Chaperonin-like RbcX family protein.;Transcript_evidence=AK060962 (DDBJ%2C Best hit);ORF_evidence=A2XN64 (UniProt);InterPro=Chaperonin-like RbcX (IPR003435);NIAS_FLcDNA=006-202-A06;Expression=AK060962;TENOR=Os03t0807900-01;KEGG=Os03t0807900-01
Chr03	irgsp1_rep	five_prime_UTR	33771756	33772005	.	+	.	Parent=Os03t0807900-01
Chr03	irgsp1_rep	CDS	33772006	33772254	.	+	0	Parent=Os03t0807900-01
Chr03	irgsp1_rep	CDS	33772585	33772676	.	+	0	Parent=Os03t0807900-01
Chr03	irgsp1_rep	CDS	33772763	33772820	.	+	1	Parent=Os03t0807900-01
Chr03	irgsp1_rep	CDS	33772929	33772994	.	+	0	Parent=Os03t0807900-01
Chr03	irgsp1_rep	CDS	33773080	33773202	.	+	0	Parent=Os03t0807900-01
Chr03	irgsp1_rep	three_prime_UTR	33773203	33773581	.	+	.	Parent=Os03t0807900-01
Chr03	irgsp1_rep	mRNA	33771857	33773444	.	+	.	ID=Os03t0807900-02;Name=Os03t0807900-02;Locus_id=Os03g0807900;Note=Chaperonin-like RbcX family protein.;Transcript_evidence=AK070287 (DDBJ%2C Best hit);ORF_evidence=A2XN64 (UniProt);InterPro=Chaperonin-like RbcX (IPR003435);NIAS_FLcDNA=J023049O16;Expression=AK070287;TENOR=Os03t0807900-02;KEGG=Os03t0807900-02
Chr03	irgsp1_rep	five_prime_UTR	33771857	33772005	.	+	.	Parent=Os03t0807900-02
Chr03	irgsp1_rep	CDS	33772006	33772254	.	+	0	Parent=Os03t0807900-02
Chr03	irgsp1_rep	CDS	33772585	33772676	.	+	0	Parent=Os03t0807900-02
Chr03	irgsp1_rep	CDS	33772763	33772820	.	+	1	Parent=Os03t0807900-02
Chr03	irgsp1_rep	CDS	33772929	33772994	.	+	0	Parent=Os03t0807900-02
Chr03	irgsp1_rep	CDS	33773080	33773202	.	+	0	Parent=Os03t0807900-02
Chr03	irgsp1_rep	three_prime_UTR	33773203	33773444	.	+	.	Parent=Os03t0807900-02
Chr03	irgsp1_rep	mRNA	33777471	33780350	.	+	.	ID=Os03t0808000-00;Name=Os03t0808000-00;Locus_id=Os03g0808000;Oryzabase Gene Symbol Synonym(s)=OsPGL11%2C PGL11;Oryzabase Gene Name Synonym(s)=Polygalacturonases-Like 11%2C PG-like 11;Note=Glycoside hydrolase%2C family 28 domain containing protein.;Transcript_evidence=BT042622 (DDBJ);ORF_evidence=NP_001051647.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);Oryzabase=22288;TENOR=Os03t0808000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	33777471	33777899	.	+	0	Parent=Os03t0808000-00
Chr03	irgsp1_rep	CDS	33778056	33778241	.	+	0	Parent=Os03t0808000-00
Chr03	irgsp1_rep	CDS	33778674	33778881	.	+	0	Parent=Os03t0808000-00
Chr03	irgsp1_rep	CDS	33779570	33779760	.	+	2	Parent=Os03t0808000-00
Chr03	irgsp1_rep	CDS	33779879	33779998	.	+	0	Parent=Os03t0808000-00
Chr03	irgsp1_rep	CDS	33780096	33780350	.	+	0	Parent=Os03t0808000-00
Chr03	irgsp1_rep	mRNA	33780015	33786259	.	-	.	ID=Os03t0808100-01;Name=Os03t0808100-01;Locus_id=Os03g0808100;CGSNL Gene Symbol=CESA2;CGSNL Gene Name=CELLULOSE SYNTHASE A2;Oryzabase Gene Symbol Synonym(s)=OsCesA2%2C OsCESA2%2C OS_CESA02;Oryzabase Gene Name Synonym(s)=Cellulose synthase A catalytic subunit 2 [UDP-forming]%2C Cellulose synthase A catalytic subunit 2;Note=Similar to Cellulose synthase-5.;Transcript_evidence=AK069196 (DDBJ%2C Best hit);ORF_evidence=Q4U0Z5 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J023003G18;Oryzabase=9054;Expression=AK069196;TENOR=Os03t0808100-01;KEGG=Os03t0808100-01 (EC:2.4.1.12)
Chr03	irgsp1_rep	five_prime_UTR	33785988	33786259	.	-	.	Parent=Os03t0808100-01
Chr03	irgsp1_rep	CDS	33785976	33785987	.	-	0	Parent=Os03t0808100-01
Chr03	irgsp1_rep	CDS	33785656	33785842	.	-	0	Parent=Os03t0808100-01
Chr03	irgsp1_rep	CDS	33785073	33785323	.	-	2	Parent=Os03t0808100-01
Chr03	irgsp1_rep	CDS	33784871	33784970	.	-	0	Parent=Os03t0808100-01
Chr03	irgsp1_rep	CDS	33784606	33784792	.	-	2	Parent=Os03t0808100-01
Chr03	irgsp1_rep	CDS	33784044	33784310	.	-	1	Parent=Os03t0808100-01
Chr03	irgsp1_rep	CDS	33783605	33783950	.	-	1	Parent=Os03t0808100-01
Chr03	irgsp1_rep	CDS	33783379	33783516	.	-	0	Parent=Os03t0808100-01
Chr03	irgsp1_rep	CDS	33783171	33783296	.	-	0	Parent=Os03t0808100-01
Chr03	irgsp1_rep	CDS	33782873	33783085	.	-	0	Parent=Os03t0808100-01
Chr03	irgsp1_rep	CDS	33782458	33782713	.	-	0	Parent=Os03t0808100-01
Chr03	irgsp1_rep	CDS	33782060	33782262	.	-	2	Parent=Os03t0808100-01
Chr03	irgsp1_rep	CDS	33781466	33781816	.	-	0	Parent=Os03t0808100-01
Chr03	irgsp1_rep	CDS	33780799	33781383	.	-	0	Parent=Os03t0808100-01
Chr03	irgsp1_rep	three_prime_UTR	33780015	33780798	.	-	.	Parent=Os03t0808100-01
Chr03	irgsp1_rep	mRNA	33783035	33784238	.	-	.	ID=Os03t0808100-02;Name=Os03t0808100-02;Locus_id=Os03g0808100;CGSNL Gene Symbol=CESA2;CGSNL Gene Name=CELLULOSE SYNTHASE A2;Oryzabase Gene Symbol Synonym(s)=OsCesA2%2C OsCESA2%2C OS_CESA02;Oryzabase Gene Name Synonym(s)=Cellulose synthase A catalytic subunit 2 [UDP-forming]%2C Cellulose synthase A catalytic subunit 2;Note=Similar to Cellulose synthase BoCesA5.;Transcript_evidence=AK058615 (DDBJ%2C Best hit);ORF_evidence=Q4U0Z5 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150);NIAS_FLcDNA=001-018-B02;Oryzabase=9054;Expression=AK058615;TENOR=Os03t0808100-02;KEGG=Os03t0808100-02 (EC:2.4.1.12)
Chr03	irgsp1_rep	five_prime_UTR	33784238	33784238	.	-	.	Parent=Os03t0808100-02
Chr03	irgsp1_rep	CDS	33784044	33784237	.	-	0	Parent=Os03t0808100-02
Chr03	irgsp1_rep	CDS	33783605	33783950	.	-	1	Parent=Os03t0808100-02
Chr03	irgsp1_rep	CDS	33783379	33783516	.	-	0	Parent=Os03t0808100-02
Chr03	irgsp1_rep	CDS	33783171	33783296	.	-	0	Parent=Os03t0808100-02
Chr03	irgsp1_rep	CDS	33783035	33783085	.	-	0	Parent=Os03t0808100-02
Chr03	irgsp1_rep	mRNA	33780378	33782264	.	-	.	ID=Os03t0808100-03;Name=Os03t0808100-03;Locus_id=Os03g0808100;CGSNL Gene Symbol=CESA2;CGSNL Gene Name=CELLULOSE SYNTHASE A2;Oryzabase Gene Symbol Synonym(s)=OsCesA2%2C OsCESA2%2C OS_CESA02;Oryzabase Gene Name Synonym(s)=Cellulose synthase A catalytic subunit 2 [UDP-forming]%2C Cellulose synthase A catalytic subunit 2;Note=Similar to Cellulose synthase BoCesA5.;Transcript_evidence=AK061688 (DDBJ%2C Best hit);ORF_evidence=Q4U0Z5 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150);NIAS_FLcDNA=001-037-B05;Oryzabase=9054;Expression=AK061688;TENOR=Os03t0808100-03;KEGG=Os03t0808100-03 (EC:2.4.1.12)
Chr03	irgsp1_rep	five_prime_UTR	33782264	33782264	.	-	.	Parent=Os03t0808100-03
Chr03	irgsp1_rep	CDS	33782060	33782263	.	-	0	Parent=Os03t0808100-03
Chr03	irgsp1_rep	CDS	33781466	33781816	.	-	0	Parent=Os03t0808100-03
Chr03	irgsp1_rep	CDS	33780799	33781383	.	-	0	Parent=Os03t0808100-03
Chr03	irgsp1_rep	three_prime_UTR	33780378	33780798	.	-	.	Parent=Os03t0808100-03
Chr03	irgsp1_rep	mRNA	33780604	33781385	.	+	.	ID=Os03t0808150-00;Name=Os03t0808150-00;Locus_id=Os03g0808150;Note=Hypothetical gene.;Transcript_evidence=BT019277 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0808150-00;KEGG=Os03t0808150-00
Chr03	irgsp1_rep	five_prime_UTR	33780604	33780753	.	+	.	Parent=Os03t0808150-00
Chr03	irgsp1_rep	CDS	33780754	33781023	.	+	0	Parent=Os03t0808150-00
Chr03	irgsp1_rep	three_prime_UTR	33781024	33781385	.	+	.	Parent=Os03t0808150-00
Chr03	irgsp1_rep	mRNA	33783633	33784789	.	+	.	ID=Os03t0808175-00;Name=Os03t0808175-00;Locus_id=Os03g0808175;Note=Non-protein coding transcript.;Transcript_evidence=U48693 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0808175-00
Chr03	irgsp1_rep	exon	33783633	33783956	.	+	.	Parent=Os03t0808175-00
Chr03	irgsp1_rep	exon	33784051	33784312	.	+	.	Parent=Os03t0808175-00
Chr03	irgsp1_rep	exon	33784608	33784789	.	+	.	Parent=Os03t0808175-00
Chr03	irgsp1_rep	mRNA	33787909	33789417	.	+	.	ID=Os03t0808200-00;Name=Os03t0808200-00;Locus_id=Os03g0808200;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=BT037819 (DDBJ);ORF_evidence=NP_001149762.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os03t0808200-00;KEGG=Os03t0808200-00
Chr03	irgsp1_rep	CDS	33787909	33789390	.	+	0	Parent=Os03t0808200-00
Chr03	irgsp1_rep	three_prime_UTR	33789391	33789417	.	+	.	Parent=Os03t0808200-00
Chr03	irgsp1_rep	mRNA	33791008	33792733	.	-	.	ID=Os03t0808300-01;Name=Os03t0808300-01;Locus_id=Os03g0808300;CGSNL Gene Symbol=REM4.2;CGSNL Gene Name=REMORIN 4.2;Oryzabase Gene Symbol Synonym(s)=OsREM4.2;Oryzabase Gene Name Synonym(s)=Remorin 4.2%2C remorin group 4 member 2;Note=Remorin%2C C-terminal region domain containing protein.;Transcript_evidence=AK109389 (DDBJ%2C Best hit);ORF_evidence=NP_001152428.1 (RefSeq);InterPro=Remorin%2C C-terminal (IPR005516);NIAS_FLcDNA=006-211-F02;Oryzabase=20273;Expression=AK109389;TENOR=Os03t0808300-01;KEGG=Os03t0808300-01
Chr03	irgsp1_rep	five_prime_UTR	33792633	33792733	.	-	.	Parent=Os03t0808300-01
Chr03	irgsp1_rep	CDS	33791970	33792632	.	-	0	Parent=Os03t0808300-01
Chr03	irgsp1_rep	CDS	33791286	33791477	.	-	0	Parent=Os03t0808300-01
Chr03	irgsp1_rep	three_prime_UTR	33791008	33791285	.	-	.	Parent=Os03t0808300-01
Chr03	irgsp1_rep	mRNA	33791288	33792625	.	+	.	ID=Os03t0808350-00;Name=Os03t0808350-00;Locus_id=Os03g0808350;Note=Hypothetical protein.;Transcript_evidence=AK361927 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0808350-00
Chr03	irgsp1_rep	five_prime_UTR	33791288	33791481	.	+	.	Parent=Os03t0808350-00
Chr03	irgsp1_rep	five_prime_UTR	33791889	33792027	.	+	.	Parent=Os03t0808350-00
Chr03	irgsp1_rep	CDS	33792028	33792625	.	+	0	Parent=Os03t0808350-00
Chr03	irgsp1_rep	mRNA	33796789	33797866	.	-	.	ID=Os03t0808400-00;Name=Os03t0808400-00;Locus_id=Os03g0808400;Note=Ubiquitin domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q84M51 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin (IPR000626),Ubiquitin supergroup (IPR019955),Myb/SANT-like domain (IPR024752);TENOR=Os03t0808400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	33797625	33797866	.	-	0	Parent=Os03t0808400-00
Chr03	irgsp1_rep	CDS	33797060	33797540	.	-	1	Parent=Os03t0808400-00
Chr03	irgsp1_rep	CDS	33796789	33796968	.	-	0	Parent=Os03t0808400-00
Chr03	irgsp1_rep	mRNA	33798940	33799687	.	+	.	ID=Os03t0808500-00;Name=Os03t0808500-00;Locus_id=Os03g0808500;Oryzabase Gene Symbol Synonym(s)=OsLTP1.3%2C OsLtpI.3;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein 1.3%2C lipid transfer protein 1.3%2C type 1 non-specific lipid transfer protein 3;Note=Plant lipid transfer protein/Par allergen family protein.;Transcript_evidence=CT835148 (DDBJ%2C Best hit);ORF_evidence=Q5NE32 (UniProt);GO=Biological Process: lipid transport (GO:0006869),Molecular Function: lipid binding (GO:0008289);InterPro=Plant lipid transfer protein/Par allergen (IPR000528),Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);Oryzabase=13512;TENOR=Os03t0808500-00;KEGG=Os03t0808500-00
Chr03	irgsp1_rep	five_prime_UTR	33798940	33799005	.	+	.	Parent=Os03t0808500-00
Chr03	irgsp1_rep	CDS	33799006	33799370	.	+	0	Parent=Os03t0808500-00
Chr03	irgsp1_rep	CDS	33799465	33799474	.	+	1	Parent=Os03t0808500-00
Chr03	irgsp1_rep	three_prime_UTR	33799475	33799687	.	+	.	Parent=Os03t0808500-00
Chr03	irgsp1_rep	mRNA	33805847	33810079	.	+	.	ID=Os03t0808600-01;Name=Os03t0808600-01;Locus_id=Os03g0808600;CGSNL Gene Symbol=CDPK8;CGSNL Gene Name=CALCIUM-DEPENDENT PROTEIN KINASE 8;Oryzabase Gene Symbol Synonym(s)=OsCDPK8%2C OsCPK8;Oryzabase Gene Name Synonym(s)=calcium-dependent protein kinase;Note=Similar to Calcium-dependent protein kinase.;Transcript_evidence=AK066615 (DDBJ%2C Best hit);ORF_evidence=B6SXT4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Calcium-binding EF-hand (IPR002048),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),EF-hand-like domain (IPR011992),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013072I23;Oryzabase=8061;Expression=AK066615;TENOR=Os03t0808600-01;KEGG=Os03t0808600-01 (EC:2.7.11.17)
Chr03	irgsp1_rep	five_prime_UTR	33805847	33806193	.	+	.	Parent=Os03t0808600-01
Chr03	irgsp1_rep	CDS	33806194	33806724	.	+	0	Parent=Os03t0808600-01
Chr03	irgsp1_rep	CDS	33807304	33807427	.	+	0	Parent=Os03t0808600-01
Chr03	irgsp1_rep	CDS	33807647	33807790	.	+	2	Parent=Os03t0808600-01
Chr03	irgsp1_rep	CDS	33807877	33808029	.	+	2	Parent=Os03t0808600-01
Chr03	irgsp1_rep	CDS	33808387	33808502	.	+	2	Parent=Os03t0808600-01
Chr03	irgsp1_rep	CDS	33808667	33808834	.	+	0	Parent=Os03t0808600-01
Chr03	irgsp1_rep	CDS	33808928	33809158	.	+	0	Parent=Os03t0808600-01
Chr03	irgsp1_rep	CDS	33809643	33809792	.	+	0	Parent=Os03t0808600-01
Chr03	irgsp1_rep	three_prime_UTR	33809793	33810079	.	+	.	Parent=Os03t0808600-01
Chr03	irgsp1_rep	mRNA	33806257	33809775	.	-	.	ID=Os03t0808750-00;Name=Os03t0808750-00;Locus_id=Os03g0808750;Note=Hypothetical protein.;Transcript_evidence=tplb0027d15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0808750-00
Chr03	irgsp1_rep	five_prime_UTR	33809639	33809775	.	-	.	Parent=Os03t0808750-00
Chr03	irgsp1_rep	five_prime_UTR	33808900	33809154	.	-	.	Parent=Os03t0808750-00
Chr03	irgsp1_rep	five_prime_UTR	33808666	33808813	.	-	.	Parent=Os03t0808750-00
Chr03	irgsp1_rep	five_prime_UTR	33808402	33808502	.	-	.	Parent=Os03t0808750-00
Chr03	irgsp1_rep	five_prime_UTR	33807881	33808047	.	-	.	Parent=Os03t0808750-00
Chr03	irgsp1_rep	five_prime_UTR	33807660	33807797	.	-	.	Parent=Os03t0808750-00
Chr03	irgsp1_rep	five_prime_UTR	33807304	33807434	.	-	.	Parent=Os03t0808750-00
Chr03	irgsp1_rep	five_prime_UTR	33806568	33806723	.	-	.	Parent=Os03t0808750-00
Chr03	irgsp1_rep	CDS	33806257	33806567	.	-	0	Parent=Os03t0808750-00
Chr03	irgsp1_rep	mRNA	33829510	33834146	.	+	.	ID=Os03t0808900-01;Name=Os03t0808900-01;Locus_id=Os03g0808900;Note=Similar to Seed imbibition protein (Fragment).;Transcript_evidence=AK065100 (DDBJ%2C Best hit);ORF_evidence=D2KZ11 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Raffinose synthase (IPR008811),Aldolase-type TIM barrel (IPR013785),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J013001N01;Oryzabase=15250;Expression=AK065100;TENOR=Os03t0808900-01;KEGG=Os03t0808900-01
Chr03	irgsp1_rep	five_prime_UTR	33829510	33829581	.	+	.	Parent=Os03t0808900-01
Chr03	irgsp1_rep	five_prime_UTR	33829696	33829717	.	+	.	Parent=Os03t0808900-01
Chr03	irgsp1_rep	CDS	33829718	33829908	.	+	0	Parent=Os03t0808900-01
Chr03	irgsp1_rep	CDS	33830277	33830509	.	+	1	Parent=Os03t0808900-01
Chr03	irgsp1_rep	CDS	33830627	33830717	.	+	2	Parent=Os03t0808900-01
Chr03	irgsp1_rep	CDS	33831296	33831344	.	+	1	Parent=Os03t0808900-01
Chr03	irgsp1_rep	CDS	33831537	33831628	.	+	0	Parent=Os03t0808900-01
Chr03	irgsp1_rep	CDS	33831699	33831812	.	+	1	Parent=Os03t0808900-01
Chr03	irgsp1_rep	CDS	33831887	33832634	.	+	1	Parent=Os03t0808900-01
Chr03	irgsp1_rep	three_prime_UTR	33832635	33832750	.	+	.	Parent=Os03t0808900-01
Chr03	irgsp1_rep	three_prime_UTR	33833040	33833174	.	+	.	Parent=Os03t0808900-01
Chr03	irgsp1_rep	three_prime_UTR	33833276	33833493	.	+	.	Parent=Os03t0808900-01
Chr03	irgsp1_rep	three_prime_UTR	33833583	33834146	.	+	.	Parent=Os03t0808900-01
Chr03	irgsp1_rep	mRNA	33829709	33834013	.	-	.	ID=Os03t0808950-00;Name=Os03t0808950-00;Locus_id=Os03g0808950;Note=Hypothetical protein.;Transcript_evidence=tplb0060c15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0808950-00
Chr03	irgsp1_rep	five_prime_UTR	33833614	33834013	.	-	.	Parent=Os03t0808950-00
Chr03	irgsp1_rep	five_prime_UTR	33833274	33833525	.	-	.	Parent=Os03t0808950-00
Chr03	irgsp1_rep	five_prime_UTR	33833044	33833174	.	-	.	Parent=Os03t0808950-00
Chr03	irgsp1_rep	five_prime_UTR	33832692	33832756	.	-	.	Parent=Os03t0808950-00
Chr03	irgsp1_rep	five_prime_UTR	33831772	33832593	.	-	.	Parent=Os03t0808950-00
Chr03	irgsp1_rep	five_prime_UTR	33831555	33831633	.	-	.	Parent=Os03t0808950-00
Chr03	irgsp1_rep	five_prime_UTR	33831312	33831363	.	-	.	Parent=Os03t0808950-00
Chr03	irgsp1_rep	CDS	33831275	33831311	.	-	0	Parent=Os03t0808950-00
Chr03	irgsp1_rep	CDS	33830274	33830575	.	-	2	Parent=Os03t0808950-00
Chr03	irgsp1_rep	CDS	33829709	33829903	.	-	0	Parent=Os03t0808950-00
Chr03	irgsp1_rep	mRNA	33834638	33835499	.	-	.	ID=Os03t0809000-01;Name=Os03t0809000-01;Locus_id=Os03g0809000;Oryzabase Gene Name Synonym(s)=dirigent;Note=Plant disease resistance response protein family protein.;Transcript_evidence=AK121408 (DDBJ%2C Best hit);ORF_evidence=E5GC07 (UniProt);InterPro=Plant disease resistance response protein (IPR004265);NIAS_FLcDNA=J023132M14;Oryzabase=21715;Expression=AK121408;TENOR=Os03t0809000-01;KEGG=Os03t0809000-01
Chr03	irgsp1_rep	five_prime_UTR	33835446	33835499	.	-	.	Parent=Os03t0809000-01
Chr03	irgsp1_rep	CDS	33834885	33835445	.	-	0	Parent=Os03t0809000-01
Chr03	irgsp1_rep	three_prime_UTR	33834638	33834884	.	-	.	Parent=Os03t0809000-01
Chr03	irgsp1_rep	mRNA	33837942	33841646	.	-	.	ID=Os03t0809100-01;Name=Os03t0809100-01;Locus_id=Os03g0809100;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Major facilitator superfamily protein.;Transcript_evidence=AK070392 (DDBJ%2C Best hit);ORF_evidence=NP_195397.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J023049P03;Oryzabase=23649;Expression=AK070392;TENOR=Os03t0809100-01;KEGG=Os03t0809100-01
Chr03	irgsp1_rep	five_prime_UTR	33841488	33841646	.	-	.	Parent=Os03t0809100-01
Chr03	irgsp1_rep	CDS	33841483	33841487	.	-	0	Parent=Os03t0809100-01
Chr03	irgsp1_rep	CDS	33839495	33840124	.	-	1	Parent=Os03t0809100-01
Chr03	irgsp1_rep	CDS	33838983	33839158	.	-	1	Parent=Os03t0809100-01
Chr03	irgsp1_rep	CDS	33838297	33838898	.	-	2	Parent=Os03t0809100-01
Chr03	irgsp1_rep	three_prime_UTR	33837942	33838296	.	-	.	Parent=Os03t0809100-01
Chr03	irgsp1_rep	mRNA	33838864	33839161	.	+	.	ID=Os03t0809150-00;Name=Os03t0809150-00;Locus_id=Os03g0809150;Note=Non-protein coding transcript.;Transcript_evidence=EU949240 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0809150-00
Chr03	irgsp1_rep	exon	33838864	33839161	.	+	.	Parent=Os03t0809150-00
Chr03	irgsp1_rep	mRNA	33844223	33845580	.	+	.	ID=Os03t0809200-01;Name=Os03t0809200-01;Locus_id=Os03g0809200;CGSNL Gene Symbol=BZIP34;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 34;Oryzabase Gene Symbol Synonym(s)=OsbZIP34;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 34;Note=Similar to Transcription factor EmBP-1 (Fragment).;Transcript_evidence=AK102250 (DDBJ%2C Best hit);ORF_evidence=Q10BP4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=bZIP transcription factor%2C bZIP-1 (IPR011616);NIAS_FLcDNA=J033088G19;Oryzabase=10121;Expression=AK102250;TENOR=Os03t0809200-01;KEGG=Os03t0809200-01
Chr03	irgsp1_rep	five_prime_UTR	33844223	33844771	.	+	.	Parent=Os03t0809200-01
Chr03	irgsp1_rep	CDS	33844772	33844939	.	+	0	Parent=Os03t0809200-01
Chr03	irgsp1_rep	CDS	33845081	33845209	.	+	0	Parent=Os03t0809200-01
Chr03	irgsp1_rep	three_prime_UTR	33845210	33845580	.	+	.	Parent=Os03t0809200-01
Chr03	irgsp1_rep	mRNA	33845782	33849847	.	-	.	ID=Os03t0809300-01;Name=Os03t0809300-01;Locus_id=Os03g0809300;Oryzabase Gene Symbol Synonym(s)=OsPP57;Oryzabase Gene Name Synonym(s)=Protein phosphatase 57;Note=Sporulation stage II%2C protein E C-terminal domain containing protein.;Transcript_evidence=AK103140 (DDBJ%2C Best hit);ORF_evidence=NP_193391.3 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932);NIAS_FLcDNA=J033120G10;Oryzabase=18641;Expression=AK103140;TENOR=Os03t0809300-01;KEGG=Os03t0809300-01
Chr03	irgsp1_rep	five_prime_UTR	33849594	33849847	.	-	.	Parent=Os03t0809300-01
Chr03	irgsp1_rep	five_prime_UTR	33849397	33849449	.	-	.	Parent=Os03t0809300-01
Chr03	irgsp1_rep	CDS	33848729	33849396	.	-	0	Parent=Os03t0809300-01
Chr03	irgsp1_rep	CDS	33847119	33847443	.	-	1	Parent=Os03t0809300-01
Chr03	irgsp1_rep	CDS	33846650	33846799	.	-	0	Parent=Os03t0809300-01
Chr03	irgsp1_rep	CDS	33846225	33846521	.	-	0	Parent=Os03t0809300-01
Chr03	irgsp1_rep	three_prime_UTR	33845782	33846224	.	-	.	Parent=Os03t0809300-01
Chr03	irgsp1_rep	mRNA	33850363	33855273	.	-	.	ID=Os03t0809400-00;Name=Os03t0809400-00;Locus_id=Os03g0809400;Note=Hypothetical conserved gene.;Transcript_evidence=BT085018 (DDBJ);ORF_evidence=Q10BP2 (UniProt);TENOR=Os03t0809400-00
Chr03	irgsp1_rep	CDS	33854330	33855273	.	-	0	Parent=Os03t0809400-00
Chr03	irgsp1_rep	CDS	33854086	33854242	.	-	1	Parent=Os03t0809400-00
Chr03	irgsp1_rep	CDS	33853227	33853283	.	-	0	Parent=Os03t0809400-00
Chr03	irgsp1_rep	CDS	33852749	33852877	.	-	0	Parent=Os03t0809400-00
Chr03	irgsp1_rep	three_prime_UTR	33850833	33851010	.	-	.	Parent=Os03t0809400-00
Chr03	irgsp1_rep	three_prime_UTR	33850363	33850585	.	-	.	Parent=Os03t0809400-00
Chr03	irgsp1_rep	mRNA	33886820	33891866	.	+	.	ID=Os03t0809700-01;Name=Os03t0809700-01;Locus_id=Os03g0809700;Oryzabase Gene Symbol Synonym(s)=OsPP58;Oryzabase Gene Name Synonym(s)=Protein phosphatase 58;Note=Similar to Kinase associated protein phosphatase.;Transcript_evidence=AK071374 (DDBJ%2C Best hit);ORF_evidence=B6UAA5 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722),Molecular Function: protein binding (GO:0005515);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Forkhead-associated (FHA) domain (IPR000253),Protein phosphatase 2C-like (IPR001932),SMAD/FHA domain (IPR008984),Protein phosphatase 2C (IPR015655),Kinase associated protein phosphatase (IPR016660);NIAS_FLcDNA=J023093B03;Oryzabase=18642;Expression=AK071374;TENOR=Os03t0809700-01;KEGG=Os03t0809700-01 (EC:3.1.3.16)
Chr03	irgsp1_rep	five_prime_UTR	33886820	33886842	.	+	.	Parent=Os03t0809700-01
Chr03	irgsp1_rep	CDS	33886843	33886974	.	+	0	Parent=Os03t0809700-01
Chr03	irgsp1_rep	CDS	33888025	33888202	.	+	0	Parent=Os03t0809700-01
Chr03	irgsp1_rep	CDS	33888347	33888514	.	+	2	Parent=Os03t0809700-01
Chr03	irgsp1_rep	CDS	33888621	33888796	.	+	2	Parent=Os03t0809700-01
Chr03	irgsp1_rep	CDS	33888922	33889080	.	+	0	Parent=Os03t0809700-01
Chr03	irgsp1_rep	CDS	33889507	33889644	.	+	0	Parent=Os03t0809700-01
Chr03	irgsp1_rep	CDS	33889708	33889769	.	+	0	Parent=Os03t0809700-01
Chr03	irgsp1_rep	CDS	33889923	33890058	.	+	1	Parent=Os03t0809700-01
Chr03	irgsp1_rep	CDS	33890588	33890682	.	+	0	Parent=Os03t0809700-01
Chr03	irgsp1_rep	CDS	33890934	33891049	.	+	1	Parent=Os03t0809700-01
Chr03	irgsp1_rep	CDS	33891130	33891259	.	+	2	Parent=Os03t0809700-01
Chr03	irgsp1_rep	CDS	33891352	33891406	.	+	1	Parent=Os03t0809700-01
Chr03	irgsp1_rep	CDS	33891479	33891619	.	+	0	Parent=Os03t0809700-01
Chr03	irgsp1_rep	three_prime_UTR	33891620	33891866	.	+	.	Parent=Os03t0809700-01
Chr03	irgsp1_rep	mRNA	33888689	33891884	.	+	.	ID=Os03t0809700-02;Name=Os03t0809700-02;Locus_id=Os03g0809700;Oryzabase Gene Symbol Synonym(s)=OsPP58;Oryzabase Gene Name Synonym(s)=Protein phosphatase 58;Note=Similar to protein Kinase-associated protein phosphatase.;Transcript_evidence=AK060622 (DDBJ%2C Best hit);ORF_evidence=B6UAA5 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722),Molecular Function: protein binding (GO:0005515);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Forkhead-associated (FHA) domain (IPR000253),Protein phosphatase 2C-like (IPR001932),SMAD/FHA domain (IPR008984),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=001-026-D10;Oryzabase=18642;Expression=AK060622;TENOR=Os03t0809700-02;KEGG=Os03t0809700-02 (EC:3.1.3.16)
Chr03	irgsp1_rep	CDS	33888689	33888796	.	+	0	Parent=Os03t0809700-02
Chr03	irgsp1_rep	CDS	33888922	33889080	.	+	0	Parent=Os03t0809700-02
Chr03	irgsp1_rep	CDS	33889507	33889644	.	+	0	Parent=Os03t0809700-02
Chr03	irgsp1_rep	CDS	33889708	33889769	.	+	0	Parent=Os03t0809700-02
Chr03	irgsp1_rep	CDS	33889923	33890051	.	+	1	Parent=Os03t0809700-02
Chr03	irgsp1_rep	CDS	33890588	33890612	.	+	1	Parent=Os03t0809700-02
Chr03	irgsp1_rep	three_prime_UTR	33890613	33890682	.	+	.	Parent=Os03t0809700-02
Chr03	irgsp1_rep	three_prime_UTR	33890934	33891049	.	+	.	Parent=Os03t0809700-02
Chr03	irgsp1_rep	three_prime_UTR	33891130	33891259	.	+	.	Parent=Os03t0809700-02
Chr03	irgsp1_rep	three_prime_UTR	33891352	33891406	.	+	.	Parent=Os03t0809700-02
Chr03	irgsp1_rep	three_prime_UTR	33891479	33891884	.	+	.	Parent=Os03t0809700-02
Chr03	irgsp1_rep	mRNA	33891972	33893270	.	-	.	ID=Os03t0809800-01;Name=Os03t0809800-01;Locus_id=Os03g0809800;Oryzabase Gene Symbol Synonym(s)=OsRFP;Oryzabase Gene Name Synonym(s)=RING finger protein;Note=Conserved hypothetical protein.;Transcript_evidence=AK241877 (DDBJ%2C Best hit);ORF_evidence=Q10BN7 (UniProt);NIAS_FLcDNA=J065218H02;Oryzabase=21038;TENOR=Os03t0809800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	33893269	33893270	.	-	.	Parent=Os03t0809800-01
Chr03	irgsp1_rep	CDS	33893199	33893268	.	-	0	Parent=Os03t0809800-01
Chr03	irgsp1_rep	CDS	33892978	33893090	.	-	2	Parent=Os03t0809800-01
Chr03	irgsp1_rep	CDS	33892228	33892599	.	-	0	Parent=Os03t0809800-01
Chr03	irgsp1_rep	three_prime_UTR	33891972	33892227	.	-	.	Parent=Os03t0809800-01
Chr03	irgsp1_rep	mRNA	33894809	33899621	.	+	.	ID=Os03t0809900-01;Name=Os03t0809900-01;Locus_id=Os03g0809900;RAP-DB Gene Symbol Synonym(s)=OsY14b%2C Y14b%2C Tsunagi%2C RBM8;Oryzabase Gene Symbol Synonym(s)=OsY14b%2C Y14b;Note=Core subunit of exon junction complex (EJC)%2C Embryonic organogenesis and development;Transcript_evidence=KF051017 (Zhonghua 10%2C 69bp deletion),AK103227;ORF_evidence=A0A023T4L4;GO=Biological Process: RNA processing (GO:0006396),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723),Cellular Component: nucleus (GO:0005634),Cellular Component: cytoplasm (GO:0005737);InterPro=RNA-binding motif protein 8 (IPR008111),Nucleotide-binding%2C alpha-beta plait (IPR012677),RNA recognition motif domain (IPR000504);Manual Curation=August 5%2C 2014;Literature_PMID=24416299,24820023;Oryzabase=18332;TENOR=Os03t0809900-01
Chr03	irgsp1_rep	five_prime_UTR	33894809	33894864	.	+	.	Parent=Os03t0809900-01
Chr03	irgsp1_rep	CDS	33894865	33895120	.	+	0	Parent=Os03t0809900-01
Chr03	irgsp1_rep	CDS	33896214	33896350	.	+	2	Parent=Os03t0809900-01
Chr03	irgsp1_rep	CDS	33897700	33897842	.	+	0	Parent=Os03t0809900-01
Chr03	irgsp1_rep	CDS	33899237	33899294	.	+	1	Parent=Os03t0809900-01
Chr03	irgsp1_rep	three_prime_UTR	33899295	33899621	.	+	.	Parent=Os03t0809900-01
Chr03	irgsp1_rep	mRNA	33905826	33907496	.	+	.	ID=Os03t0810100-01;Name=Os03t0810100-01;Locus_id=Os03g0810100;CGSNL Gene Symbol=IPT4;CGSNL Gene Name=ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 4;Oryzabase Gene Symbol Synonym(s)=OsIPT4;Oryzabase Gene Name Synonym(s)=adenosine phosphate isopentenyltransferase 4%2C isopentenyltransferase 4;Note=Similar to TRNA isopentenyl transferase-like protein (Adenylate isopentenyltransferase) (EC 2.5.1.27).;Transcript_evidence=AK070756 (DDBJ%2C Best hit);ORF_evidence=B2XWS7 (UniProt);GO=Biological Process: tRNA processing (GO:0008033),Molecular Function: ATP binding (GO:0005524);InterPro=tRNA isopentenyltransferase (IPR002627);NIAS_FLcDNA=J023065G16;Oryzabase=6174;Expression=AK070756;TENOR=Os03t0810100-01;KEGG=Os03t0810100-01 (EC:2.5.1.27)
Chr03	irgsp1_rep	five_prime_UTR	33905826	33905947	.	+	.	Parent=Os03t0810100-01
Chr03	irgsp1_rep	CDS	33905948	33907021	.	+	0	Parent=Os03t0810100-01
Chr03	irgsp1_rep	three_prime_UTR	33907022	33907496	.	+	.	Parent=Os03t0810100-01
Chr03	irgsp1_rep	mRNA	33916821	33921205	.	-	.	ID=Os03t0810300-01;Name=Os03t0810300-01;Locus_id=Os03g0810300;Note=Similar to Nudix hydrolase 13.;Transcript_evidence=AK106765 (DDBJ%2C Best hit);ORF_evidence=B6SQG1 (UniProt);NIAS_FLcDNA=002-115-E10;Expression=AK106765;TENOR=Os03t0810300-01;KEGG=Os03t0810300-01
Chr03	irgsp1_rep	five_prime_UTR	33920950	33921205	.	-	.	Parent=Os03t0810300-01
Chr03	irgsp1_rep	CDS	33920879	33920949	.	-	0	Parent=Os03t0810300-01
Chr03	irgsp1_rep	CDS	33919366	33919522	.	-	1	Parent=Os03t0810300-01
Chr03	irgsp1_rep	three_prime_UTR	33918709	33919365	.	-	.	Parent=Os03t0810300-01
Chr03	irgsp1_rep	three_prime_UTR	33916821	33917459	.	-	.	Parent=Os03t0810300-01
Chr03	irgsp1_rep	mRNA	33926482	33927110	.	+	.	ID=Os03t0810500-01;Name=Os03t0810500-01;Locus_id=Os03g0810500;Note=Hypothetical conserved gene.;Transcript_evidence=AK062378 (DDBJ%2C Best hit);ORF_evidence=A3ANX4 (UniProt);NIAS_FLcDNA=001-102-B06;Expression=AK062378;TENOR=Os03t0810500-01;KEGG=Os03t0810500-01
Chr03	irgsp1_rep	five_prime_UTR	33926482	33926660	.	+	.	Parent=Os03t0810500-01
Chr03	irgsp1_rep	CDS	33926661	33926807	.	+	0	Parent=Os03t0810500-01
Chr03	irgsp1_rep	three_prime_UTR	33926808	33927110	.	+	.	Parent=Os03t0810500-01
Chr03	irgsp1_rep	mRNA	33927612	33933844	.	-	.	ID=Os03t0810600-01;Name=Os03t0810600-01;Locus_id=Os03g0810600;Note=Miro-like domain containing protein.;Transcript_evidence=AK101920 (DDBJ%2C Best hit);ORF_evidence=A2XN85 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Biological Process: cellular homeostasis (GO:0019725),Cellular Component: intracellular (GO:0005622),Cellular Component: mitochondrial outer membrane (GO:0005741),Cellular Component: membrane (GO:0016020),Molecular Function: GTPase activity (GO:0003924),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Rab type (IPR003579),EF-hand-like domain (IPR011992),EF hand associated%2C type-1 (IPR013566),EF hand associated%2C type-2 (IPR013567),Mitochondrial Rho-like (IPR013684),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249),Small GTPase superfamily%2C Ras type (IPR020849),MIRO (IPR020860),Small GTPase superfamily%2C mitochondrial rho type (IPR021181);NIAS_FLcDNA=J033071K01;Expression=AK101920;TENOR=Os03t0810600-01;KEGG=Os03t0810600-01
Chr03	irgsp1_rep	five_prime_UTR	33933722	33933844	.	-	.	Parent=Os03t0810600-01
Chr03	irgsp1_rep	CDS	33933507	33933721	.	-	0	Parent=Os03t0810600-01
Chr03	irgsp1_rep	CDS	33933208	33933340	.	-	1	Parent=Os03t0810600-01
Chr03	irgsp1_rep	CDS	33932970	33933116	.	-	0	Parent=Os03t0810600-01
Chr03	irgsp1_rep	CDS	33932287	33932463	.	-	0	Parent=Os03t0810600-01
Chr03	irgsp1_rep	CDS	33931938	33932186	.	-	0	Parent=Os03t0810600-01
Chr03	irgsp1_rep	CDS	33931418	33931486	.	-	0	Parent=Os03t0810600-01
Chr03	irgsp1_rep	CDS	33931225	33931280	.	-	0	Parent=Os03t0810600-01
Chr03	irgsp1_rep	CDS	33930954	33931035	.	-	1	Parent=Os03t0810600-01
Chr03	irgsp1_rep	CDS	33930594	33930805	.	-	0	Parent=Os03t0810600-01
Chr03	irgsp1_rep	CDS	33930436	33930499	.	-	1	Parent=Os03t0810600-01
Chr03	irgsp1_rep	CDS	33929934	33930046	.	-	0	Parent=Os03t0810600-01
Chr03	irgsp1_rep	CDS	33929357	33929507	.	-	1	Parent=Os03t0810600-01
Chr03	irgsp1_rep	CDS	33928380	33928566	.	-	0	Parent=Os03t0810600-01
Chr03	irgsp1_rep	CDS	33927977	33928050	.	-	2	Parent=Os03t0810600-01
Chr03	irgsp1_rep	three_prime_UTR	33927612	33927976	.	-	.	Parent=Os03t0810600-01
Chr03	irgsp1_rep	mRNA	33927694	33933561	.	-	.	ID=Os03t0810600-02;Name=Os03t0810600-02;Locus_id=Os03g0810600;Note=Similar to ATP/GTP/Ca++ binding protein.;Transcript_evidence=AK068526 (DDBJ%2C Best hit);ORF_evidence=A2XN85 (UniProt);GO=Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Biological Process: cellular homeostasis (GO:0019725),Cellular Component: intracellular (GO:0005622),Cellular Component: mitochondrial outer membrane (GO:0005741),Molecular Function: GTPase activity (GO:0003924),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Rab type (IPR003579),EF-hand-like domain (IPR011992),EF hand associated%2C type-1 (IPR013566),EF hand associated%2C type-2 (IPR013567),Mitochondrial Rho-like (IPR013684),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249),MIRO (IPR020860),Small GTPase superfamily%2C mitochondrial rho type (IPR021181);NIAS_FLcDNA=J013155F08;Expression=AK068526;TENOR=Os03t0810600-02;KEGG=Os03t0810600-02
Chr03	irgsp1_rep	five_prime_UTR	33933560	33933561	.	-	.	Parent=Os03t0810600-02
Chr03	irgsp1_rep	CDS	33933507	33933559	.	-	0	Parent=Os03t0810600-02
Chr03	irgsp1_rep	CDS	33933208	33933340	.	-	1	Parent=Os03t0810600-02
Chr03	irgsp1_rep	CDS	33932970	33933116	.	-	0	Parent=Os03t0810600-02
Chr03	irgsp1_rep	CDS	33932287	33932463	.	-	0	Parent=Os03t0810600-02
Chr03	irgsp1_rep	CDS	33931938	33932186	.	-	0	Parent=Os03t0810600-02
Chr03	irgsp1_rep	CDS	33931418	33931486	.	-	0	Parent=Os03t0810600-02
Chr03	irgsp1_rep	CDS	33931225	33931280	.	-	0	Parent=Os03t0810600-02
Chr03	irgsp1_rep	CDS	33930954	33931035	.	-	1	Parent=Os03t0810600-02
Chr03	irgsp1_rep	CDS	33930594	33930805	.	-	0	Parent=Os03t0810600-02
Chr03	irgsp1_rep	CDS	33930436	33930499	.	-	1	Parent=Os03t0810600-02
Chr03	irgsp1_rep	CDS	33929934	33930046	.	-	0	Parent=Os03t0810600-02
Chr03	irgsp1_rep	CDS	33929357	33929507	.	-	1	Parent=Os03t0810600-02
Chr03	irgsp1_rep	CDS	33928380	33928566	.	-	0	Parent=Os03t0810600-02
Chr03	irgsp1_rep	CDS	33927977	33928050	.	-	2	Parent=Os03t0810600-02
Chr03	irgsp1_rep	three_prime_UTR	33927694	33927976	.	-	.	Parent=Os03t0810600-02
Chr03	irgsp1_rep	mRNA	33927640	33931486	.	-	.	ID=Os03t0810600-03;Name=Os03t0810600-03;Locus_id=Os03g0810600;Note=Similar to predicted protein.;Transcript_evidence=AK058711 (DDBJ%2C Best hit);ORF_evidence=A2XN85 (UniProt);GO=Biological Process: small GTPase mediated signal transduction (GO:0007264),Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=EF hand associated%2C type-1 (IPR013566),Mitochondrial Rho-like (IPR013684),EF-HAND 2 (IPR018249),MIRO (IPR020860);NIAS_FLcDNA=001-019-D07;Expression=AK058711;TENOR=Os03t0810600-03;KEGG=Os03t0810600-03
Chr03	irgsp1_rep	CDS	33931418	33931486	.	-	0	Parent=Os03t0810600-03
Chr03	irgsp1_rep	CDS	33931225	33931280	.	-	0	Parent=Os03t0810600-03
Chr03	irgsp1_rep	CDS	33930954	33931035	.	-	1	Parent=Os03t0810600-03
Chr03	irgsp1_rep	CDS	33930594	33930805	.	-	0	Parent=Os03t0810600-03
Chr03	irgsp1_rep	CDS	33930436	33930499	.	-	1	Parent=Os03t0810600-03
Chr03	irgsp1_rep	CDS	33929934	33930046	.	-	0	Parent=Os03t0810600-03
Chr03	irgsp1_rep	CDS	33929357	33929507	.	-	1	Parent=Os03t0810600-03
Chr03	irgsp1_rep	CDS	33928380	33928566	.	-	0	Parent=Os03t0810600-03
Chr03	irgsp1_rep	CDS	33927977	33928050	.	-	2	Parent=Os03t0810600-03
Chr03	irgsp1_rep	three_prime_UTR	33927640	33927976	.	-	.	Parent=Os03t0810600-03
Chr03	irgsp1_rep	mRNA	33936155	33937615	.	-	.	ID=Os03t0810700-00;Name=Os03t0810700-00;Locus_id=Os03g0810700;Note=Similar to Mitochondrial Rho GTPase.;Transcript_evidence=ab initio prediction;ORF_evidence=A2XN85 (UniProt);GO=Biological Process: small GTPase mediated signal transduction (GO:0007264),Cellular Component: intracellular (GO:0005622),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Small GTPase superfamily%2C Rho type (IPR003578),EF-hand-like domain (IPR011992),EF hand associated%2C type-2 (IPR013567),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249);TENOR=Os03t0810700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	33937499	33937615	.	-	0	Parent=Os03t0810700-00
Chr03	irgsp1_rep	CDS	33937212	33937361	.	-	0	Parent=Os03t0810700-00
Chr03	irgsp1_rep	CDS	33936588	33936764	.	-	0	Parent=Os03t0810700-00
Chr03	irgsp1_rep	CDS	33936155	33936307	.	-	0	Parent=Os03t0810700-00
Chr03	irgsp1_rep	mRNA	33937758	33937946	.	+	.	ID=Os03t0810750-00;Name=Os03t0810750-00;Locus_id=Os03g0810750;Note=Non-protein coding transcript.;Transcript_evidence=BT085299 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0810750-00
Chr03	irgsp1_rep	exon	33937758	33937946	.	+	.	Parent=Os03t0810750-00
Chr03	irgsp1_rep	mRNA	33938998	33941323	.	+	.	ID=Os03t0810800-01;Name=Os03t0810800-01;Locus_id=Os03g0810800;RAP-DB Gene Symbol Synonym(s)=OsABA2;RAP-DB Gene Name Synonym(s)=Abscisic Acid2;CGSNL Gene Symbol=ABA2;CGSNL Gene Name=ABA DEFICIENT 2;Oryzabase Gene Symbol Synonym(s)=OsABA2%2C OsSDR%2C SDR;Note=Short-chain alcohol dehydrogenase%2C ABA biosynthesis%2C Lesion mimic formation%2C Disease-resistance%2C Seed dormancy;Transcript_evidence=AK070201;ORF_evidence=Q7XZH5;InterPro=NAD(P)-binding domain superfamily (IPR036291),Short-chain dehydrogenase/reductase SDR (IPR002347);NIAS_FLcDNA=J023042C15;Manual Curation=April 17%2C 2018;Literature_PMID=29643863;Oryzabase=18179;TENOR=Os03t0810800-01
Chr03	irgsp1_rep	five_prime_UTR	33938998	33939117	.	+	.	Parent=Os03t0810800-01
Chr03	irgsp1_rep	CDS	33939118	33939161	.	+	0	Parent=Os03t0810800-01
Chr03	irgsp1_rep	CDS	33940319	33941120	.	+	1	Parent=Os03t0810800-01
Chr03	irgsp1_rep	three_prime_UTR	33941121	33941323	.	+	.	Parent=Os03t0810800-01
Chr03	irgsp1_rep	mRNA	33940265	33941021	.	-	.	ID=Os03t0810850-00;Name=Os03t0810850-00;Locus_id=Os03g0810850;Note=Hypothetical protein.;Transcript_evidence=EU954997 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0810850-00
Chr03	irgsp1_rep	five_prime_UTR	33940754	33941021	.	-	.	Parent=Os03t0810850-00
Chr03	irgsp1_rep	CDS	33940439	33940753	.	-	0	Parent=Os03t0810850-00
Chr03	irgsp1_rep	three_prime_UTR	33940265	33940438	.	-	.	Parent=Os03t0810850-00
Chr03	irgsp1_rep	mRNA	33941695	33946147	.	-	.	ID=Os03t0810900-01;Name=Os03t0810900-01;Locus_id=Os03g0810900;Oryzabase Gene Symbol Synonym(s)=OspPLAIVbeta%2C pPLAIVbeta;Oryzabase Gene Name Synonym(s)=Patatin-related phospholipase A IV beta;Note=ARF/SAR superfamily domain containing protein.;Transcript_evidence=AK121284 (DDBJ%2C Best hit);ORF_evidence=XP_002871068.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: metabolic process (GO:0008152),Molecular Function: GTP binding (GO:0005525);InterPro=Patatin/Phospholipase A2-related (IPR002641),Small GTPase superfamily%2C ARF/SAR type (IPR006689),Acyl transferase/acyl hydrolase/lysophospholipase (IPR016035),Triacylglycerol lipase (IPR021771);NIAS_FLcDNA=J023108N19;Oryzabase=19878;Expression=AK121284;TENOR=Os03t0810900-01;KEGG=Os03t0810900-01
Chr03	irgsp1_rep	five_prime_UTR	33945328	33946147	.	-	.	Parent=Os03t0810900-01
Chr03	irgsp1_rep	CDS	33944785	33945327	.	-	0	Parent=Os03t0810900-01
Chr03	irgsp1_rep	CDS	33943468	33944334	.	-	0	Parent=Os03t0810900-01
Chr03	irgsp1_rep	CDS	33942925	33943068	.	-	0	Parent=Os03t0810900-01
Chr03	irgsp1_rep	CDS	33941921	33942829	.	-	0	Parent=Os03t0810900-01
Chr03	irgsp1_rep	three_prime_UTR	33941695	33941920	.	-	.	Parent=Os03t0810900-01
Chr03	irgsp1_rep	mRNA	33955293	33961962	.	+	.	ID=Os03t0811100-01;Name=Os03t0811100-01;Locus_id=Os03g0811100;RAP-DB Gene Symbol Synonym(s)=OsChlD%2C ChlD%2C YGL98%2C Ygl7;RAP-DB Gene Name Synonym(s)=magnesium chelatase subunit ChlD%2C magnesium-chelatase ChlD subunit%2C yellow-green leaf mutant 98%2C yellow-green leaf 7%2C magnesium-chelatase ChlD protein;CGSNL Gene Symbol=YGL98;CGSNL Gene Name=YELLOW-GREEN LEAF 98;Oryzabase Gene Symbol Synonym(s)=OsChlD%2C ChlD%2C CHLD%2C OsCHLD%2C Ygl7%2C YGL3;Oryzabase Gene Name Synonym(s)=magnesium chelatase subunit ChlD%2C magnesium-chelatase ChlD subunit%2C yellow-green leaf mutant 98%2C yellow-green leaf 7%2C magnesium-chelatase ChlD protein%2C MgCh D subunit%2C D-subunit of Mg-chelatase%2C Mg-chelatase D subunit%2C yellow green leaf3%2C yellow green leaf 3;Note=Magnesium-chelatase subunit ChlD%2C Chlorophyll synthesis%2C Chloroplast development;Transcript_evidence=EF065605,AK072463;ORF_evidence=Q6ATS0;GO=Biological Process: chlorophyll biosynthetic process (GO:0015995),Molecular Function: ATP binding (GO:0005524),Molecular Function: magnesium chelatase activity (GO:0016851);InterPro=Magnesium chelatase%2C ATPase subunit D (IPR011776),P-loop containing nucleoside triphosphate hydrolase (IPR027417),AAA+ ATPase domain (IPR003593),Magnesium chelatase ChlI domain (IPR000523),von Willebrand factor%2C type A (IPR002035);NIAS_FLcDNA=J023114K24;Manual Curation=October 13%2C 2015;Literature_PMID=24932524,16915519;Oryzabase=10270;Expression=AK072463;TENOR=Os03t0811100-01;KEGG=Os03t0811100-01 (EC:6.6.1.1)
Chr03	irgsp1_rep	five_prime_UTR	33955293	33955316	.	+	.	Parent=Os03t0811100-01
Chr03	irgsp1_rep	CDS	33955317	33955577	.	+	0	Parent=Os03t0811100-01
Chr03	irgsp1_rep	CDS	33956404	33956582	.	+	0	Parent=Os03t0811100-01
Chr03	irgsp1_rep	CDS	33956756	33956840	.	+	1	Parent=Os03t0811100-01
Chr03	irgsp1_rep	CDS	33956920	33957236	.	+	0	Parent=Os03t0811100-01
Chr03	irgsp1_rep	CDS	33957397	33957520	.	+	1	Parent=Os03t0811100-01
Chr03	irgsp1_rep	CDS	33958224	33958316	.	+	0	Parent=Os03t0811100-01
Chr03	irgsp1_rep	CDS	33958710	33958805	.	+	0	Parent=Os03t0811100-01
Chr03	irgsp1_rep	CDS	33959119	33959268	.	+	0	Parent=Os03t0811100-01
Chr03	irgsp1_rep	CDS	33959342	33959539	.	+	0	Parent=Os03t0811100-01
Chr03	irgsp1_rep	CDS	33959827	33959982	.	+	0	Parent=Os03t0811100-01
Chr03	irgsp1_rep	CDS	33960130	33960237	.	+	0	Parent=Os03t0811100-01
Chr03	irgsp1_rep	CDS	33960406	33960540	.	+	0	Parent=Os03t0811100-01
Chr03	irgsp1_rep	CDS	33960623	33960778	.	+	0	Parent=Os03t0811100-01
Chr03	irgsp1_rep	CDS	33960958	33961078	.	+	0	Parent=Os03t0811100-01
Chr03	irgsp1_rep	CDS	33961596	33961681	.	+	2	Parent=Os03t0811100-01
Chr03	irgsp1_rep	three_prime_UTR	33961682	33961962	.	+	.	Parent=Os03t0811100-01
Chr03	irgsp1_rep	mRNA	33958707	33961891	.	+	.	ID=Os03t0811100-02;Name=Os03t0811100-02;Locus_id=Os03g0811100;CGSNL Gene Symbol=YGL98;CGSNL Gene Name=YELLOW-GREEN LEAF 98;Oryzabase Gene Symbol Synonym(s)=OsChlD%2C ChlD%2C CHLD%2C OsCHLD%2C Ygl7%2C YGL3;Oryzabase Gene Name Synonym(s)=magnesium chelatase subunit ChlD%2C magnesium-chelatase ChlD subunit%2C yellow-green leaf mutant 98%2C yellow-green leaf 7%2C magnesium-chelatase ChlD protein%2C MgCh D subunit%2C D-subunit of Mg-chelatase%2C Mg-chelatase D subunit%2C yellow green leaf3%2C yellow green leaf 3;Note=Similar to Chloroplast Mg-chelatase subunit XANTHA-G.;Transcript_evidence=AK061963 (DDBJ%2C Best hit);ORF_evidence=O22437 (UniProt);GO=Biological Process: chlorophyll biosynthetic process (GO:0015995),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: magnesium chelatase activity (GO:0016851);InterPro=von Willebrand factor%2C type A (IPR002035),Magnesium chelatase%2C ATPase subunit D (IPR011776);NIAS_FLcDNA=001-042-G05;Oryzabase=10270;Expression=AK061963;TENOR=Os03t0811100-02;KEGG=Os03t0811100-02
Chr03	irgsp1_rep	CDS	33958707	33958805	.	+	0	Parent=Os03t0811100-02
Chr03	irgsp1_rep	CDS	33959119	33959268	.	+	0	Parent=Os03t0811100-02
Chr03	irgsp1_rep	CDS	33959342	33959539	.	+	0	Parent=Os03t0811100-02
Chr03	irgsp1_rep	CDS	33959827	33959982	.	+	0	Parent=Os03t0811100-02
Chr03	irgsp1_rep	CDS	33960130	33960237	.	+	0	Parent=Os03t0811100-02
Chr03	irgsp1_rep	CDS	33960406	33960540	.	+	0	Parent=Os03t0811100-02
Chr03	irgsp1_rep	CDS	33960623	33960778	.	+	0	Parent=Os03t0811100-02
Chr03	irgsp1_rep	CDS	33960958	33961078	.	+	0	Parent=Os03t0811100-02
Chr03	irgsp1_rep	CDS	33961596	33961681	.	+	2	Parent=Os03t0811100-02
Chr03	irgsp1_rep	three_prime_UTR	33961682	33961891	.	+	.	Parent=Os03t0811100-02
Chr03	irgsp1_rep	mRNA	33962373	33968064	.	+	.	ID=Os03t0811200-01;Name=Os03t0811200-01;Locus_id=Os03g0811200;Note=BRCT domain containing protein.;Transcript_evidence=AK069532 (DDBJ%2C Best hit);ORF_evidence=B8AMB9 (UniProt);GO=Cellular Component: intracellular (GO:0005622);InterPro=BRCT (IPR001357);NIAS_FLcDNA=J023019G17;Expression=AK069532;TENOR=Os03t0811200-01;KEGG=Os03t0811200-01
Chr03	irgsp1_rep	five_prime_UTR	33962373	33962452	.	+	.	Parent=Os03t0811200-01
Chr03	irgsp1_rep	CDS	33962453	33962491	.	+	0	Parent=Os03t0811200-01
Chr03	irgsp1_rep	CDS	33962674	33962772	.	+	0	Parent=Os03t0811200-01
Chr03	irgsp1_rep	CDS	33962999	33963142	.	+	0	Parent=Os03t0811200-01
Chr03	irgsp1_rep	CDS	33963524	33964276	.	+	0	Parent=Os03t0811200-01
Chr03	irgsp1_rep	CDS	33964373	33965192	.	+	0	Parent=Os03t0811200-01
Chr03	irgsp1_rep	CDS	33965307	33965554	.	+	2	Parent=Os03t0811200-01
Chr03	irgsp1_rep	CDS	33965699	33965805	.	+	0	Parent=Os03t0811200-01
Chr03	irgsp1_rep	CDS	33966512	33966662	.	+	1	Parent=Os03t0811200-01
Chr03	irgsp1_rep	CDS	33966792	33966944	.	+	0	Parent=Os03t0811200-01
Chr03	irgsp1_rep	CDS	33967319	33967456	.	+	0	Parent=Os03t0811200-01
Chr03	irgsp1_rep	three_prime_UTR	33967457	33968064	.	+	.	Parent=Os03t0811200-01
Chr03	irgsp1_rep	mRNA	33969167	33971519	.	+	.	ID=Os03t0811300-01;Name=Os03t0811300-01;Locus_id=Os03g0811300;Note=Similar to AP-1 complex subunit sigma-2.;Transcript_evidence=AK071871 (DDBJ%2C Best hit);ORF_evidence=B6U542 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: intracellular protein transport (GO:0006886),Biological Process: protein transport (GO:0015031),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: membrane coat (GO:0030117),Molecular Function: protein transporter activity (GO:0008565);InterPro=Clathrin adaptor complex%2C small chain (IPR000804),Longin-like (IPR011012),Adaptor protein complex%2C sigma subunit (IPR016635),AP complex%2C mu/sigma subunit (IPR022775);NIAS_FLcDNA=J023118N18;TENOR=Os03t0811300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	33969167	33969280	.	+	.	Parent=Os03t0811300-01
Chr03	irgsp1_rep	CDS	33969281	33969283	.	+	0	Parent=Os03t0811300-01
Chr03	irgsp1_rep	CDS	33969803	33969889	.	+	0	Parent=Os03t0811300-01
Chr03	irgsp1_rep	CDS	33970000	33970091	.	+	0	Parent=Os03t0811300-01
Chr03	irgsp1_rep	CDS	33970251	33970359	.	+	1	Parent=Os03t0811300-01
Chr03	irgsp1_rep	CDS	33970473	33970508	.	+	0	Parent=Os03t0811300-01
Chr03	irgsp1_rep	CDS	33970610	33970696	.	+	0	Parent=Os03t0811300-01
Chr03	irgsp1_rep	CDS	33971151	33971222	.	+	0	Parent=Os03t0811300-01
Chr03	irgsp1_rep	three_prime_UTR	33971223	33971519	.	+	.	Parent=Os03t0811300-01
Chr03	irgsp1_rep	mRNA	33973760	33975525	.	+	.	ID=Os03t0811400-00;Name=Os03t0811400-00;Locus_id=Os03g0811400;Oryzabase Gene Symbol Synonym(s)=OsbHLH041;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 041;Note=Similar to DNA binding protein.;Transcript_evidence=EU970714 (DDBJ);ORF_evidence=NP_001151425.1 (RefSeq);InterPro=Helix-loop-helix DNA-binding (IPR011598);Oryzabase=15332;TENOR=Os03t0811400-00;KEGG=Os03t0811400-00
Chr03	irgsp1_rep	five_prime_UTR	33973760	33973853	.	+	.	Parent=Os03t0811400-00
Chr03	irgsp1_rep	CDS	33973854	33974145	.	+	0	Parent=Os03t0811400-00
Chr03	irgsp1_rep	CDS	33974679	33975193	.	+	2	Parent=Os03t0811400-00
Chr03	irgsp1_rep	three_prime_UTR	33975194	33975525	.	+	.	Parent=Os03t0811400-00
Chr03	irgsp1_rep	mRNA	33988216	33991906	.	-	.	ID=Os03t0811500-01;Name=Os03t0811500-01;Locus_id=Os03g0811500;Note=Zinc finger%2C HIT-type domain containing protein.;Transcript_evidence=AK103214 (DDBJ%2C Best hit);ORF_evidence=B6SV90 (UniProt);InterPro=PAPA-1-like conserved region (IPR006880),Zinc finger%2C HIT-type (IPR007529);NIAS_FLcDNA=J033122M20;Expression=AK103214;TENOR=Os03t0811500-01;KEGG=Os03t0811500-01
Chr03	irgsp1_rep	five_prime_UTR	33991799	33991906	.	-	.	Parent=Os03t0811500-01
Chr03	irgsp1_rep	five_prime_UTR	33991262	33991318	.	-	.	Parent=Os03t0811500-01
Chr03	irgsp1_rep	CDS	33990704	33991261	.	-	0	Parent=Os03t0811500-01
Chr03	irgsp1_rep	CDS	33989679	33990219	.	-	0	Parent=Os03t0811500-01
Chr03	irgsp1_rep	CDS	33989223	33989323	.	-	2	Parent=Os03t0811500-01
Chr03	irgsp1_rep	CDS	33989068	33989148	.	-	0	Parent=Os03t0811500-01
Chr03	irgsp1_rep	CDS	33988852	33988979	.	-	0	Parent=Os03t0811500-01
Chr03	irgsp1_rep	CDS	33988557	33988719	.	-	1	Parent=Os03t0811500-01
Chr03	irgsp1_rep	three_prime_UTR	33988216	33988556	.	-	.	Parent=Os03t0811500-01
Chr03	irgsp1_rep	mRNA	33994325	33995305	.	-	.	ID=Os03t0811550-00;Name=Os03t0811550-00;Locus_id=Os03g0811550;Note=Protein of unknown function DUF617%2C plant domain containing protein.;Transcript_evidence=AK332854 (DDBJ);ORF_evidence=Q7XZH1 (UniProt);InterPro=Protein of unknown function DUF617%2C plant (IPR006460);TENOR=Os03t0811550-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	33995276	33995305	.	-	.	Parent=Os03t0811550-00
Chr03	irgsp1_rep	CDS	33994325	33995275	.	-	0	Parent=Os03t0811550-00
Chr03	irgsp1_rep	mRNA	33995633	33998631	.	-	.	ID=Os03t0811600-01;Name=Os03t0811600-01;Locus_id=Os03g0811600;CGSNL Gene Symbol=CYP22;CGSNL Gene Name=CYCLOPHILIN 22;Oryzabase Gene Symbol Synonym(s)=OsCYP22%2C OsCYP-10;Oryzabase Gene Name Synonym(s)=cyclophilin 22%2C cyclophilin 10;Note=Similar to Peptidyl prolyl isomerase H.;Transcript_evidence=AK071076 (DDBJ%2C Best hit);ORF_evidence=Q1KL26 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);InterPro=Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type (IPR002130),Cyclophilin-like (IPR015891),Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type%2C conserved site (IPR020892);NIAS_FLcDNA=J023078H22;Oryzabase=10064;Expression=AK071076;TENOR=Os03t0811600-01;KEGG=Os03t0811600-01 (EC:5.2.1.8)
Chr03	irgsp1_rep	five_prime_UTR	33998579	33998631	.	-	.	Parent=Os03t0811600-01
Chr03	irgsp1_rep	CDS	33998370	33998578	.	-	0	Parent=Os03t0811600-01
Chr03	irgsp1_rep	CDS	33998226	33998249	.	-	1	Parent=Os03t0811600-01
Chr03	irgsp1_rep	CDS	33997722	33997809	.	-	1	Parent=Os03t0811600-01
Chr03	irgsp1_rep	CDS	33997382	33997474	.	-	0	Parent=Os03t0811600-01
Chr03	irgsp1_rep	CDS	33996666	33996698	.	-	0	Parent=Os03t0811600-01
Chr03	irgsp1_rep	CDS	33996410	33996466	.	-	0	Parent=Os03t0811600-01
Chr03	irgsp1_rep	CDS	33995991	33996101	.	-	0	Parent=Os03t0811600-01
Chr03	irgsp1_rep	three_prime_UTR	33995633	33995990	.	-	.	Parent=Os03t0811600-01
Chr03	irgsp1_rep	mRNA	33998808	33999467	.	+	.	ID=Os03t0811700-01;Name=Os03t0811700-01;Locus_id=Os03g0811700;Note=Similar to Pre-mRNA branch site protein p14 (SF3B 14 kDa subunit).;Transcript_evidence=AK121661 (DDBJ%2C Best hit),AK059288 (DDBJ%2C Best hit);ORF_evidence=B6T0W0 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033064C03,001-025-D12;Expression=AK121661;TENOR=Os03t0811700-01;KEGG=Os03t0811700-01
Chr03	irgsp1_rep	five_prime_UTR	33998808	33998895	.	+	.	Parent=Os03t0811700-01
Chr03	irgsp1_rep	CDS	33998896	33999288	.	+	0	Parent=Os03t0811700-01
Chr03	irgsp1_rep	three_prime_UTR	33999289	33999467	.	+	.	Parent=Os03t0811700-01
Chr03	irgsp1_rep	mRNA	34001075	34002388	.	-	.	ID=Os03t0811800-01;Name=Os03t0811800-01;Locus_id=Os03g0811800;Note=Ribosomal protein L36 family protein.;Transcript_evidence=AK063320 (DDBJ%2C Best hit);ORF_evidence=B8AM87 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L36 (IPR000473);NIAS_FLcDNA=001-113-H01;Expression=AK063320;TENOR=Os03t0811800-01;KEGG=Os03t0811800-01
Chr03	irgsp1_rep	five_prime_UTR	34002289	34002388	.	-	.	Parent=Os03t0811800-01
Chr03	irgsp1_rep	CDS	34002080	34002288	.	-	0	Parent=Os03t0811800-01
Chr03	irgsp1_rep	CDS	34001224	34001311	.	-	1	Parent=Os03t0811800-01
Chr03	irgsp1_rep	three_prime_UTR	34001075	34001223	.	-	.	Parent=Os03t0811800-01
Chr03	irgsp1_rep	mRNA	34006999	34009631	.	+	.	ID=Os03t0811900-01;Name=Os03t0811900-01;Locus_id=Os03g0811900;Oryzabase Gene Symbol Synonym(s)=OsARFA1f%2C ARFA1f;Oryzabase Gene Name Synonym(s)=ADP-ribosylation factor 2B%2C ADP-ribosylation factor A1f;Note=Similar to ADP-ribosylation factor.;Transcript_evidence=AK122007 (DDBJ%2C Best hit);ORF_evidence=Q6S4R7 (UniProt);GO=Biological Process: small GTPase mediated signal transduction (GO:0007264),Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C ARF/SAR type (IPR006689),Small GTPase superfamily%2C ARF type (IPR024156);NIAS_FLcDNA=J033111C09;Oryzabase=16685;Expression=AK122007;TENOR=Os03t0811900-01;KEGG=Os03t0811900-01
Chr03	irgsp1_rep	five_prime_UTR	34006999	34007101	.	+	.	Parent=Os03t0811900-01
Chr03	irgsp1_rep	five_prime_UTR	34007440	34007458	.	+	.	Parent=Os03t0811900-01
Chr03	irgsp1_rep	CDS	34007459	34007606	.	+	0	Parent=Os03t0811900-01
Chr03	irgsp1_rep	CDS	34008245	34008315	.	+	2	Parent=Os03t0811900-01
Chr03	irgsp1_rep	CDS	34008507	34008626	.	+	0	Parent=Os03t0811900-01
Chr03	irgsp1_rep	CDS	34008880	34008998	.	+	0	Parent=Os03t0811900-01
Chr03	irgsp1_rep	CDS	34009189	34009270	.	+	1	Parent=Os03t0811900-01
Chr03	irgsp1_rep	CDS	34009398	34009403	.	+	0	Parent=Os03t0811900-01
Chr03	irgsp1_rep	three_prime_UTR	34009404	34009631	.	+	.	Parent=Os03t0811900-01
Chr03	irgsp1_rep	mRNA	34010918	34015642	.	-	.	ID=Os03t0812000-01;Name=Os03t0812000-01;Locus_id=Os03g0812000;Note=DNA topoisomerase%2C type IIA%2C subunit A or C-terminal domain containing protein.;Transcript_evidence=AK059281 (DDBJ%2C Best hit);ORF_evidence=Q7XZF7 (UniProt);GO=Biological Process: DNA metabolic process (GO:0006259),Biological Process: DNA topological change (GO:0006265),Cellular Component: Chromosome (GO:0005694),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA topoisomerase activity (GO:0003916),Molecular Function: DNA topoisomerase (ATP-hydrolyzing) activity (GO:0003918),Molecular Function: ATP binding (GO:0005524);InterPro=DNA gyrase/topoisomerase IV%2C subunit A%2C C-terminal beta-pinwheel (IPR006691),DNA topoisomerase%2C type IIA%2C subunit A%2C alpha-helical (IPR013757),DNA topoisomerase%2C type IIA%2C central (IPR013760);NIAS_FLcDNA=001-025-D02;Expression=AK059281;TENOR=Os03t0812000-01;KEGG=Os03t0812000-01 (EC:5.99.1.3)
Chr03	irgsp1_rep	five_prime_UTR	34015641	34015642	.	-	.	Parent=Os03t0812000-01
Chr03	irgsp1_rep	CDS	34015602	34015640	.	-	0	Parent=Os03t0812000-01
Chr03	irgsp1_rep	CDS	34015425	34015514	.	-	0	Parent=Os03t0812000-01
Chr03	irgsp1_rep	CDS	34014628	34014753	.	-	0	Parent=Os03t0812000-01
Chr03	irgsp1_rep	CDS	34014374	34014531	.	-	0	Parent=Os03t0812000-01
Chr03	irgsp1_rep	CDS	34013855	34013936	.	-	1	Parent=Os03t0812000-01
Chr03	irgsp1_rep	CDS	34013610	34013774	.	-	0	Parent=Os03t0812000-01
Chr03	irgsp1_rep	CDS	34013418	34013519	.	-	0	Parent=Os03t0812000-01
Chr03	irgsp1_rep	CDS	34013106	34013227	.	-	0	Parent=Os03t0812000-01
Chr03	irgsp1_rep	CDS	34012379	34012499	.	-	1	Parent=Os03t0812000-01
Chr03	irgsp1_rep	CDS	34012060	34012114	.	-	0	Parent=Os03t0812000-01
Chr03	irgsp1_rep	CDS	34011864	34011963	.	-	2	Parent=Os03t0812000-01
Chr03	irgsp1_rep	CDS	34011250	34011406	.	-	1	Parent=Os03t0812000-01
Chr03	irgsp1_rep	three_prime_UTR	34010918	34011249	.	-	.	Parent=Os03t0812000-01
Chr03	irgsp1_rep	mRNA	34031452	34034030	.	+	.	ID=Os03t0812200-01;Name=Os03t0812200-01;Locus_id=Os03g0812200;Oryzabase Gene Symbol Synonym(s)=OsRFP;Oryzabase Gene Name Synonym(s)=RING finger protein;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK067585 (DDBJ%2C Best hit);ORF_evidence=B6T559 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J013111A16;Oryzabase=21152;Expression=AK067585;TENOR=Os03t0812200-01;KEGG=Os03t0812200-01 (EC:6.3.2.19)
Chr03	irgsp1_rep	five_prime_UTR	34031452	34031589	.	+	.	Parent=Os03t0812200-01
Chr03	irgsp1_rep	five_prime_UTR	34032141	34032300	.	+	.	Parent=Os03t0812200-01
Chr03	irgsp1_rep	CDS	34032301	34033410	.	+	0	Parent=Os03t0812200-01
Chr03	irgsp1_rep	three_prime_UTR	34033411	34033412	.	+	.	Parent=Os03t0812200-01
Chr03	irgsp1_rep	three_prime_UTR	34033522	34034030	.	+	.	Parent=Os03t0812200-01
Chr03	irgsp1_rep	mRNA	34031481	34033730	.	+	.	ID=Os03t0812200-02;Name=Os03t0812200-02;Locus_id=Os03g0812200;Oryzabase Gene Symbol Synonym(s)=OsRFP;Oryzabase Gene Name Synonym(s)=RING finger protein;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK060419 (DDBJ%2C Best hit);ORF_evidence=B6T559 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=001-010-F10;Oryzabase=21152;Expression=AK060419;TENOR=Os03t0812200-02;KEGG=Os03t0812200-02 (EC:6.3.2.19)
Chr03	irgsp1_rep	five_prime_UTR	34031481	34031589	.	+	.	Parent=Os03t0812200-02
Chr03	irgsp1_rep	five_prime_UTR	34032141	34032300	.	+	.	Parent=Os03t0812200-02
Chr03	irgsp1_rep	CDS	34032301	34033410	.	+	0	Parent=Os03t0812200-02
Chr03	irgsp1_rep	three_prime_UTR	34033411	34033412	.	+	.	Parent=Os03t0812200-02
Chr03	irgsp1_rep	three_prime_UTR	34033522	34033730	.	+	.	Parent=Os03t0812200-02
Chr03	irgsp1_rep	mRNA	34034393	34035101	.	+	.	ID=Os03t0812300-01;Name=Os03t0812300-01;Locus_id=Os03g0812300;Note=Hypothetical gene.;Transcript_evidence=AK108409 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-142-G12;TENOR=Os03t0812300-01
Chr03	irgsp1_rep	five_prime_UTR	34034393	34034832	.	+	.	Parent=Os03t0812300-01
Chr03	irgsp1_rep	CDS	34034833	34035101	.	+	0	Parent=Os03t0812300-01
Chr03	irgsp1_rep	mRNA	34036246	34037092	.	+	.	ID=Os03t0812400-01;Name=Os03t0812400-01;Locus_id=Os03g0812400;Note=EF-Hand type domain containing protein.;Transcript_evidence=AK119951 (DDBJ%2C Best hit);ORF_evidence=A2XNA2 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=002-184-C05;Expression=AK119951;TENOR=Os03t0812400-01;KEGG=Os03t0812400-01
Chr03	irgsp1_rep	five_prime_UTR	34036246	34036317	.	+	.	Parent=Os03t0812400-01
Chr03	irgsp1_rep	CDS	34036318	34036959	.	+	0	Parent=Os03t0812400-01
Chr03	irgsp1_rep	three_prime_UTR	34036960	34037092	.	+	.	Parent=Os03t0812400-01
Chr03	irgsp1_rep	mRNA	34039087	34045065	.	+	.	ID=Os03t0812500-01;Name=Os03t0812500-01;Locus_id=Os03g0812500;Note=Non-protein coding transcript.;Transcript_evidence=AK102548 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J033097A01;TENOR=Os03t0812500-01
Chr03	irgsp1_rep	exon	34039087	34039861	.	+	.	Parent=Os03t0812500-01
Chr03	irgsp1_rep	exon	34040551	34040646	.	+	.	Parent=Os03t0812500-01
Chr03	irgsp1_rep	exon	34042818	34042881	.	+	.	Parent=Os03t0812500-01
Chr03	irgsp1_rep	exon	34044411	34044545	.	+	.	Parent=Os03t0812500-01
Chr03	irgsp1_rep	exon	34044642	34045065	.	+	.	Parent=Os03t0812500-01
Chr03	irgsp1_rep	mRNA	34050446	34055950	.	+	.	ID=Os03t0812800-00;Name=Os03t0812800-00;Locus_id=Os03g0812800;Note=Similar to calcium-binding allergen Ole e 8.;Transcript_evidence=DQ245470 (DDBJ);ORF_evidence=NP_001152369.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);TENOR=Os03t0812800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	34050446	34051017	.	+	0	Parent=Os03t0812800-00
Chr03	irgsp1_rep	CDS	34055756	34055831	.	+	1	Parent=Os03t0812800-00
Chr03	irgsp1_rep	three_prime_UTR	34055832	34055950	.	+	.	Parent=Os03t0812800-00
Chr03	irgsp1_rep	mRNA	34071601	34072369	.	-	.	ID=Os03t0813200-00;Name=Os03t0813200-00;Locus_id=Os03g0813200;Note=Similar to prohibitin1.;Transcript_evidence=BT016524 (DDBJ);ORF_evidence=NP_001105553.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Prohibitin (IPR000163);TENOR=Os03t0813200-00;KEGG=Os03t0813200-00
Chr03	irgsp1_rep	CDS	34072211	34072369	.	-	0	Parent=Os03t0813200-00
Chr03	irgsp1_rep	CDS	34071785	34071982	.	-	0	Parent=Os03t0813200-00
Chr03	irgsp1_rep	three_prime_UTR	34071601	34071784	.	-	.	Parent=Os03t0813200-00
Chr03	irgsp1_rep	mRNA	34081401	34081817	.	-	.	ID=Os03t0813450-01;Name=Os03t0813450-01;Locus_id=Os03g0813450;Note=Non-protein coding transcript.;Transcript_evidence=AK242450 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080096D24;TENOR=Os03t0813450-01
Chr03	irgsp1_rep	exon	34081401	34081817	.	-	.	Parent=Os03t0813450-01
Chr03	irgsp1_rep	mRNA	34088986	34089787	.	+	.	ID=Os03t0813700-00;Name=Os03t0813700-00;Locus_id=Os03g0813700;Note=Proteinase inhibitor I29%2C cathepsin propeptide domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001173684.1 (RefSeq);GO=Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase C1A%2C papain (IPR013128),Proteinase inhibitor I29%2C cathepsin propeptide (IPR013201);TENOR=Os03t0813700-00;KEGG=Os03t0813700-00
Chr03	irgsp1_rep	CDS	34088986	34089217	.	+	0	Parent=Os03t0813700-00
Chr03	irgsp1_rep	CDS	34089399	34089787	.	+	2	Parent=Os03t0813700-00
Chr03	irgsp1_rep	mRNA	34108014	34108587	.	+	.	ID=Os03t0814200-00;Name=Os03t0814200-00;Locus_id=Os03g0814200;Note=Conserved hypothetical protein.;Transcript_evidence=EU948197 (DDBJ);ORF_evidence=Q75HG1 (UniProt);TENOR=Os03t0814200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	34108014	34108077	.	+	.	Parent=Os03t0814200-00
Chr03	irgsp1_rep	CDS	34108078	34108587	.	+	0	Parent=Os03t0814200-00
Chr03	irgsp1_rep	mRNA	34123536	34124320	.	-	.	ID=Os03t0814500-00;Name=Os03t0814500-00;Locus_id=Os03g0814500;Note=Hypothetical conserved gene.;Transcript_evidence=EU959955 (DDBJ);ORF_evidence=A2XNB6 (UniProt);TENOR=Os03t0814500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	34124266	34124320	.	-	.	Parent=Os03t0814500-00
Chr03	irgsp1_rep	CDS	34123735	34124265	.	-	0	Parent=Os03t0814500-00
Chr03	irgsp1_rep	three_prime_UTR	34123536	34123734	.	-	.	Parent=Os03t0814500-00
Chr03	irgsp1_rep	mRNA	34123976	34124443	.	+	.	ID=Os03t0814550-00;Name=Os03t0814550-00;Locus_id=Os03g0814550;Note=Conserved hypothetical protein.;Transcript_evidence=EU948197 (DDBJ);ORF_evidence=Q75HG1 (UniProt);TENOR=Os03t0814550-00
Chr03	irgsp1_rep	CDS	34123976	34124443	.	+	0	Parent=Os03t0814550-00
Chr03	irgsp1_rep	mRNA	34125740	34128214	.	-	.	ID=Os03t0814600-00;Name=Os03t0814600-00;Locus_id=Os03g0814600;Note=Similar to Mitochondrial prohibitin complex protein 2.;Transcript_evidence=ab initio prediction;ORF_evidence=B4FMS7 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Prohibitin (IPR000163),Band 7 protein (IPR001107);TENOR=Os03t0814600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	34127564	34128214	.	-	0	Parent=Os03t0814600-00
Chr03	irgsp1_rep	CDS	34127291	34127407	.	-	0	Parent=Os03t0814600-00
Chr03	irgsp1_rep	CDS	34126561	34126731	.	-	0	Parent=Os03t0814600-00
Chr03	irgsp1_rep	CDS	34126344	34126412	.	-	0	Parent=Os03t0814600-00
Chr03	irgsp1_rep	CDS	34126199	34126291	.	-	0	Parent=Os03t0814600-00
Chr03	irgsp1_rep	CDS	34125740	34125934	.	-	0	Parent=Os03t0814600-00
Chr03	irgsp1_rep	mRNA	34144737	34145271	.	-	.	ID=Os03t0814800-00;Name=Os03t0814800-00;Locus_id=Os03g0814800;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B8AM96 (UniProt);InterPro=Myb/SANT-like domain (IPR024752);TENOR=Os03t0814800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	34144963	34145271	.	-	0	Parent=Os03t0814800-00
Chr03	irgsp1_rep	CDS	34144737	34144865	.	-	0	Parent=Os03t0814800-00
Chr03	irgsp1_rep	mRNA	34166100	34167521	.	+	.	ID=Os03t0815100-01;Name=Os03t0815100-01;Locus_id=Os03g0815100;Oryzabase Gene Symbol Synonym(s)=SNAC1%2C snac1%2C OsNAC9%2C ONAC002%2C ONAC2%2C ONAC033%2C ONAC33%2C ONAC043%2C ONAC43%2C ONAC044%2C ONAC44%2C OsNAC19%2C NAC19%2C SNAC1/ONAC002%2C OsSNAC1;Oryzabase Gene Name Synonym(s)=SNAC1: stress-responsive NAC1%2C stress-responsive NAC 1%2C stress-induced transcription factor NAC1%2C NAC domain protein 9%2C NAC domain-containing protein 2%2C NAC domain-containing protein 33%2C NAC domain-containing protein 43%2C NAC domain-containing protein 44;Note=Similar to OsNAC6 protein.;Transcript_evidence=AK067690 (DDBJ%2C Best hit),AK099245 (DDBJ%2C Best hit),AK104551 (DDBJ%2C Best hit),AK104712 (DDBJ%2C Best hit);ORF_evidence=Q27JE5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=J013120D02,J013116P10,006-305-E06,001-037-H04;Oryzabase=6442;TENOR=Os03t0815100-01
Chr03	irgsp1_rep	five_prime_UTR	34166100	34166178	.	+	.	Parent=Os03t0815100-01
Chr03	irgsp1_rep	CDS	34166179	34166652	.	+	0	Parent=Os03t0815100-01
Chr03	irgsp1_rep	CDS	34166782	34167258	.	+	0	Parent=Os03t0815100-01
Chr03	irgsp1_rep	three_prime_UTR	34167259	34167521	.	+	.	Parent=Os03t0815100-01
Chr03	irgsp1_rep	mRNA	34167824	34173328	.	-	.	ID=Os03t0815200-01;Name=Os03t0815200-01;Locus_id=Os03g0815200;Note=Similar to Methylenetetrahydrofolate reductase (EC 1.5.1.20).;Transcript_evidence=AK121351 (DDBJ%2C Best hit);ORF_evidence=A2XNC0 (UniProt);GO=Biological Process: methionine metabolic process (GO:0006555),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: methylenetetrahydrofolate reductase (NADPH) activity (GO:0004489);InterPro=Methylenetetrahydrofolate reductase (IPR003171),Eukaryotic-type methylenetetrahydrofolate reductase (IPR004621);NIAS_FLcDNA=J023121O06;Expression=AK121351;TENOR=Os03t0815200-01;KEGG=Os03t0815200-01 (EC:1.5.1.20)
Chr03	irgsp1_rep	five_prime_UTR	34173263	34173328	.	-	.	Parent=Os03t0815200-01
Chr03	irgsp1_rep	CDS	34173044	34173262	.	-	0	Parent=Os03t0815200-01
Chr03	irgsp1_rep	CDS	34171483	34171665	.	-	0	Parent=Os03t0815200-01
Chr03	irgsp1_rep	CDS	34171266	34171326	.	-	0	Parent=Os03t0815200-01
Chr03	irgsp1_rep	CDS	34171097	34171179	.	-	2	Parent=Os03t0815200-01
Chr03	irgsp1_rep	CDS	34170727	34170900	.	-	0	Parent=Os03t0815200-01
Chr03	irgsp1_rep	CDS	34170415	34170588	.	-	0	Parent=Os03t0815200-01
Chr03	irgsp1_rep	CDS	34170245	34170345	.	-	0	Parent=Os03t0815200-01
Chr03	irgsp1_rep	CDS	34170043	34170154	.	-	1	Parent=Os03t0815200-01
Chr03	irgsp1_rep	CDS	34169619	34169699	.	-	0	Parent=Os03t0815200-01
Chr03	irgsp1_rep	CDS	34169343	34169520	.	-	0	Parent=Os03t0815200-01
Chr03	irgsp1_rep	CDS	34168555	34168889	.	-	2	Parent=Os03t0815200-01
Chr03	irgsp1_rep	CDS	34168140	34168223	.	-	0	Parent=Os03t0815200-01
Chr03	irgsp1_rep	three_prime_UTR	34167824	34168139	.	-	.	Parent=Os03t0815200-01
Chr03	irgsp1_rep	mRNA	34167934	34170346	.	-	.	ID=Os03t0815200-02;Name=Os03t0815200-02;Locus_id=Os03g0815200;Note=Similar to Methylenetetrahydrofolate reductase.;Transcript_evidence=AK099527 (DDBJ%2C Best hit);ORF_evidence=A2XNC0 (UniProt);NIAS_FLcDNA=J013031C07;Expression=AK099527;TENOR=Os03t0815200-02;KEGG=Os03t0815200-02 (EC:1.5.1.20)
Chr03	irgsp1_rep	five_prime_UTR	34170346	34170346	.	-	.	Parent=Os03t0815200-02
Chr03	irgsp1_rep	CDS	34170245	34170345	.	-	0	Parent=Os03t0815200-02
Chr03	irgsp1_rep	CDS	34170043	34170154	.	-	1	Parent=Os03t0815200-02
Chr03	irgsp1_rep	CDS	34169619	34169699	.	-	0	Parent=Os03t0815200-02
Chr03	irgsp1_rep	CDS	34169343	34169520	.	-	0	Parent=Os03t0815200-02
Chr03	irgsp1_rep	CDS	34168555	34168889	.	-	2	Parent=Os03t0815200-02
Chr03	irgsp1_rep	CDS	34168140	34168223	.	-	0	Parent=Os03t0815200-02
Chr03	irgsp1_rep	three_prime_UTR	34167934	34168139	.	-	.	Parent=Os03t0815200-02
Chr03	irgsp1_rep	mRNA	34167939	34170130	.	-	.	ID=Os03t0815200-03;Name=Os03t0815200-03;Locus_id=Os03g0815200;Note=Similar to Methylenetetrahydrofolate reductase.;Transcript_evidence=AK062082 (DDBJ%2C Best hit);ORF_evidence=A2XNC0 (UniProt);NIAS_FLcDNA=001-044-F11;Expression=AK062082;TENOR=Os03t0815200-03;KEGG=Os03t0815200-03 (EC:1.5.1.20)
Chr03	irgsp1_rep	five_prime_UTR	34170130	34170130	.	-	.	Parent=Os03t0815200-03
Chr03	irgsp1_rep	CDS	34170043	34170129	.	-	0	Parent=Os03t0815200-03
Chr03	irgsp1_rep	CDS	34169619	34169699	.	-	0	Parent=Os03t0815200-03
Chr03	irgsp1_rep	CDS	34169343	34169520	.	-	0	Parent=Os03t0815200-03
Chr03	irgsp1_rep	CDS	34168555	34168889	.	-	2	Parent=Os03t0815200-03
Chr03	irgsp1_rep	CDS	34168140	34168223	.	-	0	Parent=Os03t0815200-03
Chr03	irgsp1_rep	three_prime_UTR	34167939	34168139	.	-	.	Parent=Os03t0815200-03
Chr03	irgsp1_rep	mRNA	34167935	34168225	.	-	.	ID=Os03t0815200-04;Name=Os03t0815200-04;Locus_id=Os03g0815200;Note=Similar to Methylenetetrahydrofolate reductase (Fragment).;Transcript_evidence=AK058876 (DDBJ%2C Best hit);ORF_evidence=A6N158 (UniProt);NIAS_FLcDNA=001-006-G01;Expression=AK058876;TENOR=Os03t0815200-04;KEGG=Os03t0815200-04
Chr03	irgsp1_rep	five_prime_UTR	34168224	34168225	.	-	.	Parent=Os03t0815200-04
Chr03	irgsp1_rep	CDS	34168140	34168223	.	-	0	Parent=Os03t0815200-04
Chr03	irgsp1_rep	three_prime_UTR	34167935	34168139	.	-	.	Parent=Os03t0815200-04
Chr03	irgsp1_rep	mRNA	34167934	34168225	.	+	.	ID=Os03t0815266-00;Name=Os03t0815266-00;Locus_id=Os03g0815266;Note=Non-protein coding transcript.;Transcript_evidence=BT019001 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0815266-00
Chr03	irgsp1_rep	exon	34167934	34168225	.	+	.	Parent=Os03t0815266-00
Chr03	irgsp1_rep	mRNA	34174682	34175047	.	-	.	ID=Os03t0815332-00;Name=Os03t0815332-00;Locus_id=Os03g0815332;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3AP04 (UniProt);TENOR=Os03t0815332-00
Chr03	irgsp1_rep	CDS	34174682	34175047	.	-	0	Parent=Os03t0815332-00
Chr03	irgsp1_rep	mRNA	34174779	34176667	.	+	.	ID=Os03t0815400-01;Name=Os03t0815400-01;Locus_id=Os03g0815400;Note=Ribosomal protein L17-like protein.;Transcript_evidence=AK067057 (DDBJ%2C Best hit),AK104198 (DDBJ%2C Best hit);ORF_evidence=B4FZB4 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L17 (IPR000456);NIAS_FLcDNA=J013089C03,006-304-A06;TENOR=Os03t0815400-01
Chr03	irgsp1_rep	five_prime_UTR	34174779	34174850	.	+	.	Parent=Os03t0815400-01
Chr03	irgsp1_rep	CDS	34174851	34175073	.	+	0	Parent=Os03t0815400-01
Chr03	irgsp1_rep	CDS	34175650	34176059	.	+	2	Parent=Os03t0815400-01
Chr03	irgsp1_rep	three_prime_UTR	34176440	34176667	.	+	.	Parent=Os03t0815400-01
Chr03	irgsp1_rep	mRNA	34186437	34190737	.	+	.	ID=Os03t0815700-01;Name=Os03t0815700-01;Locus_id=Os03g0815700;RAP-DB Gene Symbol Synonym(s)=Spin1%2C SPIN1;RAP-DB Gene Name Synonym(s)=SPL11-interacting protein1%2C SPL11-interacting protein 1;Oryzabase Gene Symbol Synonym(s)=Spin1%2C SPIN1;Oryzabase Gene Name Synonym(s)=SPL11-interacting protein1%2C SPL11-interacting protein 1;Note=K Homology domain containing protein%2C Nuclear RNA/DNA binding protein of the STAR (Signal Transduction and Activation of RNA) family%2C Flowering time control;Transcript_evidence=AK065405;ORF_evidence=Q75GR5;GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723);InterPro=KH domain containing protein%2C SPIN1 (IPR031149),STAR protein%2C homodimerisation region (IPR032377),K Homology domain (IPR004087),K Homology domain%2C type 1 (IPR004088);NIAS_FLcDNA=J013007I03;Manual Curation=March 7%2C 2016;Literature_PMID=18586868;Oryzabase=11592;Expression=AK065405;TENOR=Os03t0815700-01;KEGG=Os03t0815700-01
Chr03	irgsp1_rep	five_prime_UTR	34186437	34186642	.	+	.	Parent=Os03t0815700-01
Chr03	irgsp1_rep	CDS	34186643	34186725	.	+	0	Parent=Os03t0815700-01
Chr03	irgsp1_rep	CDS	34186836	34186924	.	+	1	Parent=Os03t0815700-01
Chr03	irgsp1_rep	CDS	34188287	34188438	.	+	2	Parent=Os03t0815700-01
Chr03	irgsp1_rep	CDS	34188665	34188781	.	+	0	Parent=Os03t0815700-01
Chr03	irgsp1_rep	CDS	34188877	34188993	.	+	0	Parent=Os03t0815700-01
Chr03	irgsp1_rep	CDS	34189583	34189726	.	+	0	Parent=Os03t0815700-01
Chr03	irgsp1_rep	CDS	34190129	34190272	.	+	0	Parent=Os03t0815700-01
Chr03	irgsp1_rep	three_prime_UTR	34190273	34190737	.	+	.	Parent=Os03t0815700-01
Chr03	irgsp1_rep	mRNA	34192581	34193650	.	-	.	ID=Os03t0815800-01;Name=Os03t0815800-01;Locus_id=Os03g0815800;CGSNL Gene Symbol=ERF58;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 58;Oryzabase Gene Symbol Synonym(s)=OsERF#058%2C OsERF058%2C OsERF58%2C AP2/EREBP#032%2C AP2/EREBP32;Oryzabase Gene Name Synonym(s)=ethylene response factor 58%2C APETALA2/ethylene-responsive element binding protein 32;Note=Similar to Ethylene-responsive transcription factor 5 (Ethylene-responsive element binding factor 5) (EREBP-5) (AtERF5).;Transcript_evidence=AK068252 (DDBJ%2C Best hit),AK066670 (DDBJ%2C Best hit);ORF_evidence=B9F6Y2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J013145D23,J013074E02;Oryzabase=10574;Expression=AK068252;TENOR=Os03t0815800-01;KEGG=Os03t0815800-01
Chr03	irgsp1_rep	five_prime_UTR	34193459	34193650	.	-	.	Parent=Os03t0815800-01
Chr03	irgsp1_rep	CDS	34192733	34193458	.	-	0	Parent=Os03t0815800-01
Chr03	irgsp1_rep	three_prime_UTR	34192581	34192732	.	-	.	Parent=Os03t0815800-01
Chr03	irgsp1_rep	mRNA	34192560	34192817	.	-	.	ID=Os03t0815800-03;Name=Os03t0815800-03;Locus_id=Os03g0815800;CGSNL Gene Symbol=ERF58;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 58;Oryzabase Gene Symbol Synonym(s)=OsERF#058%2C OsERF058%2C OsERF58%2C AP2/EREBP#032%2C AP2/EREBP32;Oryzabase Gene Name Synonym(s)=ethylene response factor 58%2C APETALA2/ethylene-responsive element binding protein 32;Note=Hypothetical conserved gene.;Transcript_evidence=AK060543 (DDBJ%2C Best hit);ORF_evidence=B9F6Y2 (UniProt);NIAS_FLcDNA=001-021-E07;Oryzabase=10574;Expression=AK060543;TENOR=Os03t0815800-03;KEGG=Os03t0815800-03
Chr03	irgsp1_rep	five_prime_UTR	34192817	34192817	.	-	.	Parent=Os03t0815800-03
Chr03	irgsp1_rep	CDS	34192733	34192816	.	-	0	Parent=Os03t0815800-03
Chr03	irgsp1_rep	three_prime_UTR	34192560	34192732	.	-	.	Parent=Os03t0815800-03
Chr03	irgsp1_rep	mRNA	34195226	34197990	.	-	.	ID=Os03t0815900-01;Name=Os03t0815900-01;Locus_id=Os03g0815900;Note=Similar to DNA-directed RNA polymerase.;Transcript_evidence=AK119756 (DDBJ%2C Best hit),AK065258 (DDBJ%2C Best hit);ORF_evidence=NP_001149284.1 (RefSeq);NIAS_FLcDNA=002-167-H05,J013002J17;Oryzabase=23043;TENOR=Os03t0815900-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	34197878	34197990	.	-	.	Parent=Os03t0815900-01
Chr03	irgsp1_rep	CDS	34197722	34197877	.	-	0	Parent=Os03t0815900-01
Chr03	irgsp1_rep	CDS	34195432	34196379	.	-	0	Parent=Os03t0815900-01
Chr03	irgsp1_rep	three_prime_UTR	34195226	34195431	.	-	.	Parent=Os03t0815900-01
Chr03	irgsp1_rep	mRNA	34198879	34201889	.	-	.	ID=Os03t0816000-01;Name=Os03t0816000-01;Locus_id=Os03g0816000;Oryzabase Gene Symbol Synonym(s)=OsPUB26;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 26%2C U-box protein 26;Note=Hypothetical conserved gene.;Transcript_evidence=AK241479 (DDBJ%2C Best hit);ORF_evidence=NP_001051688.2 (RefSeq);NIAS_FLcDNA=J065165N03;Oryzabase=17818;TENOR=Os03t0816000-01;KEGG=Os03t0816000-01
Chr03	irgsp1_rep	five_prime_UTR	34201828	34201889	.	-	.	Parent=Os03t0816000-01
Chr03	irgsp1_rep	CDS	34201554	34201827	.	-	0	Parent=Os03t0816000-01
Chr03	irgsp1_rep	CDS	34201095	34201347	.	-	2	Parent=Os03t0816000-01
Chr03	irgsp1_rep	CDS	34200627	34200735	.	-	1	Parent=Os03t0816000-01
Chr03	irgsp1_rep	three_prime_UTR	34200123	34200626	.	-	.	Parent=Os03t0816000-01
Chr03	irgsp1_rep	three_prime_UTR	34199565	34199647	.	-	.	Parent=Os03t0816000-01
Chr03	irgsp1_rep	three_prime_UTR	34199372	34199467	.	-	.	Parent=Os03t0816000-01
Chr03	irgsp1_rep	three_prime_UTR	34199226	34199296	.	-	.	Parent=Os03t0816000-01
Chr03	irgsp1_rep	three_prime_UTR	34198879	34199144	.	-	.	Parent=Os03t0816000-01
Chr03	irgsp1_rep	mRNA	34202464	34206271	.	-	.	ID=Os03t0816100-01;Name=Os03t0816100-01;Locus_id=Os03g0816100;Note=Similar to Protein kinase.;Transcript_evidence=AK103264 (DDBJ%2C Best hit);ORF_evidence=Q84TX0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033124F12;Expression=AK103264;TENOR=Os03t0816100-01;KEGG=Os03t0816100-01
Chr03	irgsp1_rep	five_prime_UTR	34205890	34206271	.	-	.	Parent=Os03t0816100-01
Chr03	irgsp1_rep	CDS	34205660	34205889	.	-	0	Parent=Os03t0816100-01
Chr03	irgsp1_rep	CDS	34204904	34205036	.	-	1	Parent=Os03t0816100-01
Chr03	irgsp1_rep	CDS	34204555	34204750	.	-	0	Parent=Os03t0816100-01
Chr03	irgsp1_rep	CDS	34203949	34204073	.	-	2	Parent=Os03t0816100-01
Chr03	irgsp1_rep	CDS	34203480	34203656	.	-	0	Parent=Os03t0816100-01
Chr03	irgsp1_rep	three_prime_UTR	34202464	34203479	.	-	.	Parent=Os03t0816100-01
Chr03	irgsp1_rep	mRNA	34207176	34207668	.	+	.	ID=Os03t0816150-00;Name=Os03t0816150-00;Locus_id=Os03g0816150;Note=Conserved hypothetical protein.;Transcript_evidence=EU948702 (DDBJ);ORF_evidence=Q7XXM5 (UniProt);TENOR=Os03t0816150-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	34207176	34207450	.	+	.	Parent=Os03t0816150-00
Chr03	irgsp1_rep	CDS	34207451	34207624	.	+	0	Parent=Os03t0816150-00
Chr03	irgsp1_rep	three_prime_UTR	34207625	34207668	.	+	.	Parent=Os03t0816150-00
Chr03	irgsp1_rep	mRNA	34215410	34218100	.	+	.	ID=Os03t0816200-01;Name=Os03t0816200-01;Locus_id=Os03g0816200;Note=Ribosomal protein S26e domain containing protein.;Transcript_evidence=AK109021 (DDBJ%2C Best hit);ORF_evidence=B6T1S7 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S26e (IPR000892);NIAS_FLcDNA=002-154-B01;Expression=AK109021;TENOR=Os03t0816200-01;KEGG=Os03t0816200-01
Chr03	irgsp1_rep	five_prime_UTR	34215410	34215478	.	+	.	Parent=Os03t0816200-01
Chr03	irgsp1_rep	five_prime_UTR	34215567	34215684	.	+	.	Parent=Os03t0816200-01
Chr03	irgsp1_rep	five_prime_UTR	34216126	34216183	.	+	.	Parent=Os03t0816200-01
Chr03	irgsp1_rep	CDS	34216184	34216211	.	+	0	Parent=Os03t0816200-01
Chr03	irgsp1_rep	CDS	34216297	34216423	.	+	2	Parent=Os03t0816200-01
Chr03	irgsp1_rep	CDS	34217525	34217585	.	+	1	Parent=Os03t0816200-01
Chr03	irgsp1_rep	three_prime_UTR	34217586	34218100	.	+	.	Parent=Os03t0816200-01
Chr03	irgsp1_rep	mRNA	34219947	34222683	.	-	.	ID=Os03t0816300-01;Name=Os03t0816300-01;Locus_id=Os03g0816300;Note=Conserved hypothetical protein.;Transcript_evidence=AK109509 (DDBJ%2C Best hit);ORF_evidence=Q10BI8 (UniProt);NIAS_FLcDNA=002-104-B06;TENOR=Os03t0816300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	34222669	34222683	.	-	.	Parent=Os03t0816300-01
Chr03	irgsp1_rep	CDS	34222081	34222668	.	-	0	Parent=Os03t0816300-01
Chr03	irgsp1_rep	CDS	34221828	34222004	.	-	0	Parent=Os03t0816300-01
Chr03	irgsp1_rep	CDS	34221578	34221760	.	-	0	Parent=Os03t0816300-01
Chr03	irgsp1_rep	CDS	34221331	34221513	.	-	0	Parent=Os03t0816300-01
Chr03	irgsp1_rep	CDS	34221098	34221265	.	-	0	Parent=Os03t0816300-01
Chr03	irgsp1_rep	CDS	34220056	34221030	.	-	0	Parent=Os03t0816300-01
Chr03	irgsp1_rep	three_prime_UTR	34219947	34220055	.	-	.	Parent=Os03t0816300-01
Chr03	irgsp1_rep	mRNA	34227528	34232133	.	-	.	ID=Os03t0816400-02;Name=Os03t0816400-02;Locus_id=Os03g0816400;Note=GTP-binding protein%2C HSR1-related domain containing protein.;Transcript_evidence=AK101843 (DDBJ%2C Best hit),AK109765 (DDBJ%2C Best hit);ORF_evidence=NP_974959.1 (RefSeq);NIAS_FLcDNA=J033069H17,002-146-H09;Expression=AK101843;TENOR=Os03t0816400-02;KEGG=Os03t0816400-02
Chr03	irgsp1_rep	five_prime_UTR	34232017	34232133	.	-	.	Parent=Os03t0816400-02
Chr03	irgsp1_rep	five_prime_UTR	34231541	34231577	.	-	.	Parent=Os03t0816400-02
Chr03	irgsp1_rep	CDS	34230667	34231540	.	-	0	Parent=Os03t0816400-02
Chr03	irgsp1_rep	CDS	34230017	34230135	.	-	2	Parent=Os03t0816400-02
Chr03	irgsp1_rep	CDS	34229821	34229940	.	-	0	Parent=Os03t0816400-02
Chr03	irgsp1_rep	CDS	34229559	34229646	.	-	0	Parent=Os03t0816400-02
Chr03	irgsp1_rep	CDS	34229226	34229317	.	-	2	Parent=Os03t0816400-02
Chr03	irgsp1_rep	CDS	34229025	34229129	.	-	0	Parent=Os03t0816400-02
Chr03	irgsp1_rep	CDS	34228448	34228557	.	-	0	Parent=Os03t0816400-02
Chr03	irgsp1_rep	CDS	34228143	34228230	.	-	1	Parent=Os03t0816400-02
Chr03	irgsp1_rep	CDS	34228009	34228044	.	-	0	Parent=Os03t0816400-02
Chr03	irgsp1_rep	CDS	34227820	34227903	.	-	0	Parent=Os03t0816400-02
Chr03	irgsp1_rep	three_prime_UTR	34227528	34227819	.	-	.	Parent=Os03t0816400-02
Chr03	irgsp1_rep	mRNA	34234446	34238406	.	+	.	ID=Os03t0816500-01;Name=Os03t0816500-01;Locus_id=Os03g0816500;CGSNL Gene Symbol=ALKBH1;Oryzabase Gene Symbol Synonym(s)=OsALKBH1;Oryzabase Gene Name Synonym(s)=AlkB homolog 1;Note=Hypothetical conserved gene.;Transcript_evidence=AK099739 (DDBJ%2C Best hit);ORF_evidence=Q10BI5 (UniProt);NIAS_FLcDNA=J013090P21;Oryzabase=22668;Expression=AK099739;TENOR=Os03t0816500-01;KEGG=Os03t0816500-01 (EC:1.14.11.-)
Chr03	irgsp1_rep	five_prime_UTR	34234446	34235461	.	+	.	Parent=Os03t0816500-01
Chr03	irgsp1_rep	CDS	34235462	34235551	.	+	0	Parent=Os03t0816500-01
Chr03	irgsp1_rep	CDS	34236444	34236848	.	+	0	Parent=Os03t0816500-01
Chr03	irgsp1_rep	CDS	34237193	34237732	.	+	0	Parent=Os03t0816500-01
Chr03	irgsp1_rep	three_prime_UTR	34237733	34238406	.	+	.	Parent=Os03t0816500-01
Chr03	irgsp1_rep	mRNA	34234446	34238406	.	+	.	ID=Os03t0816500-02;Name=Os03t0816500-02;Locus_id=Os03g0816500;RAP-DB Gene Symbol Synonym(s)=OsALKBH1;RAP-DB Gene Name Synonym(s)=AlkB homolog 1;CGSNL Gene Symbol=ALKBH1;Oryzabase Gene Symbol Synonym(s)=OsALKBH1;Oryzabase Gene Name Synonym(s)=AlkB homolog 1;Note=Rice homolog of E.coli AlkB%2C DNA 6mA (N<sup>6</sup>-methyladenine) demethylation;Transcript_evidence=Inferred from literature;ORF_evidence=Q10BI6;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily (IPR037151),Alpha-ketoglutarate-dependent dioxygenase AlkB-like (IPR027450),Oxoglutarate/iron-dependent dioxygenase (IPR005123);Manual Curation=June 10%2C 2019;Literature_PMID=30061746;Oryzabase=22668;Subcellular location=nucleus (GO:0005634)
Chr03	irgsp1_rep	five_prime_UTR	34234446	34235461	.	+	.	Parent=Os03t0816500-02
Chr03	irgsp1_rep	CDS	34235462	34235551	.	+	0	Parent=Os03t0816500-02
Chr03	irgsp1_rep	CDS	34236444	34236848	.	+	0	Parent=Os03t0816500-02
Chr03	irgsp1_rep	CDS	34237193	34237537	.	+	0	Parent=Os03t0816500-02
Chr03	irgsp1_rep	CDS	34237802	34238077	.	+	0	Parent=Os03t0816500-02
Chr03	irgsp1_rep	three_prime_UTR	34238078	34238406	.	+	.	Parent=Os03t0816500-02
Chr03	irgsp1_rep	mRNA	34238474	34241383	.	+	.	ID=Os03t0816600-01;Name=Os03t0816600-01;Locus_id=Os03g0816600;Note=Similar to pentatricopeptide repeat-containing protein.;Transcript_evidence=AK069320 (DDBJ%2C Best hit);ORF_evidence=XP_002879907.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J023018C14;TENOR=Os03t0816600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	34238474	34238659	.	+	.	Parent=Os03t0816600-01
Chr03	irgsp1_rep	CDS	34238660	34240600	.	+	0	Parent=Os03t0816600-01
Chr03	irgsp1_rep	three_prime_UTR	34240601	34240986	.	+	.	Parent=Os03t0816600-01
Chr03	irgsp1_rep	three_prime_UTR	34241076	34241383	.	+	.	Parent=Os03t0816600-01
Chr03	irgsp1_rep	mRNA	34242164	34243419	.	-	.	ID=Os03t0816700-01;Name=Os03t0816700-01;Locus_id=Os03g0816700;Note=Tubby%2C C-terminal domain containing protein.;Transcript_evidence=AK107781 (DDBJ%2C Best hit);ORF_evidence=Q10BI3 (UniProt);InterPro=Tubby%2C C-terminal (IPR000007),Protein of unknown function DUF567 (IPR007612);NIAS_FLcDNA=002-133-C07;TENOR=Os03t0816700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	34243345	34243419	.	-	.	Parent=Os03t0816700-01
Chr03	irgsp1_rep	CDS	34242871	34243344	.	-	0	Parent=Os03t0816700-01
Chr03	irgsp1_rep	CDS	34242273	34242434	.	-	0	Parent=Os03t0816700-01
Chr03	irgsp1_rep	three_prime_UTR	34242164	34242272	.	-	.	Parent=Os03t0816700-01
Chr03	irgsp1_rep	mRNA	34245096	34246212	.	-	.	ID=Os03t0816800-01;Name=Os03t0816800-01;Locus_id=Os03g0816800;Note=Protein of unknown function DUF567 family protein.;Transcript_evidence=AK071618 (DDBJ%2C Best hit);ORF_evidence=B8AMA3 (UniProt);InterPro=Tubby%2C C-terminal (IPR000007),Protein of unknown function DUF567 (IPR007612);NIAS_FLcDNA=J023104J18;Expression=AK071618;TENOR=Os03t0816800-01;KEGG=Os03t0816800-01
Chr03	irgsp1_rep	five_prime_UTR	34246083	34246212	.	-	.	Parent=Os03t0816800-01
Chr03	irgsp1_rep	CDS	34245849	34246082	.	-	0	Parent=Os03t0816800-01
Chr03	irgsp1_rep	CDS	34245522	34245755	.	-	0	Parent=Os03t0816800-01
Chr03	irgsp1_rep	CDS	34245276	34245410	.	-	0	Parent=Os03t0816800-01
Chr03	irgsp1_rep	three_prime_UTR	34245096	34245275	.	-	.	Parent=Os03t0816800-01
Chr03	irgsp1_rep	mRNA	34257858	34263571	.	+	.	ID=Os03t0816900-01;Name=Os03t0816900-01;Locus_id=Os03g0816900;Oryzabase Gene Symbol Synonym(s)=OsSCAR3%2C SCAR3%2C OsSCAR2%2C SCAR2;Oryzabase Gene Name Synonym(s)=Suppressor of cAMP Receptor-Like Protein 3%2C SCAR-like Protein 3%2C suppressor of cAMP receptor 2;Note=Conserved hypothetical protein.;Transcript_evidence=AK066412 (DDBJ%2C Best hit);ORF_evidence=Q10BI0 (UniProt);NIAS_FLcDNA=J013067N10;Oryzabase=19953;TENOR=Os03t0816900-01
Chr03	irgsp1_rep	CDS	34257858	34257913	.	+	0	Parent=Os03t0816900-01
Chr03	irgsp1_rep	CDS	34259113	34259276	.	+	1	Parent=Os03t0816900-01
Chr03	irgsp1_rep	CDS	34259383	34259506	.	+	2	Parent=Os03t0816900-01
Chr03	irgsp1_rep	CDS	34259582	34259708	.	+	1	Parent=Os03t0816900-01
Chr03	irgsp1_rep	CDS	34260235	34260296	.	+	0	Parent=Os03t0816900-01
Chr03	irgsp1_rep	CDS	34260386	34261437	.	+	1	Parent=Os03t0816900-01
Chr03	irgsp1_rep	CDS	34261581	34261970	.	+	2	Parent=Os03t0816900-01
Chr03	irgsp1_rep	CDS	34262081	34263571	.	+	2	Parent=Os03t0816900-01
Chr03	irgsp1_rep	mRNA	34260279	34266363	.	-	.	ID=Os03t0816950-01;Name=Os03t0816950-01;Locus_id=Os03g0816950;Note=Hypothetical protein.;Transcript_evidence=AK318537 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065203A07;TENOR=Os03t0816950-01;KEGG=Os03t0816950-01
Chr03	irgsp1_rep	five_prime_UTR	34262958	34266363	.	-	.	Parent=Os03t0816950-01
Chr03	irgsp1_rep	CDS	34262694	34262957	.	-	0	Parent=Os03t0816950-01
Chr03	irgsp1_rep	three_prime_UTR	34260279	34262693	.	-	.	Parent=Os03t0816950-01
Chr03	irgsp1_rep	mRNA	34264973	34266862	.	+	.	ID=Os03t0817000-01;Name=Os03t0817000-01;Locus_id=Os03g0817000;Oryzabase Gene Symbol Synonym(s)=OsSCAR3%2C SCAR3%2C OsSCAR2%2C SCAR2;Oryzabase Gene Name Synonym(s)=Suppressor of cAMP Receptor-Like Protein 3%2C SCAR-like Protein 3%2C suppressor of cAMP receptor 2;Note=Actin-binding WH2 domain containing protein.;Transcript_evidence=AK104998 (DDBJ%2C Best hit);ORF_evidence=Q10BI0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Actin-binding WH2 (IPR003124);NIAS_FLcDNA=001-003-E05;Oryzabase=19953;Expression=AK104998;TENOR=Os03t0817000-01;KEGG=Os03t0817000-01
Chr03	irgsp1_rep	five_prime_UTR	34264973	34264974	.	+	.	Parent=Os03t0817000-01
Chr03	irgsp1_rep	CDS	34264975	34266042	.	+	0	Parent=Os03t0817000-01
Chr03	irgsp1_rep	CDS	34266124	34266210	.	+	0	Parent=Os03t0817000-01
Chr03	irgsp1_rep	CDS	34266299	34266418	.	+	0	Parent=Os03t0817000-01
Chr03	irgsp1_rep	CDS	34266510	34266566	.	+	0	Parent=Os03t0817000-01
Chr03	irgsp1_rep	three_prime_UTR	34266567	34266862	.	+	.	Parent=Os03t0817000-01
Chr03	irgsp1_rep	mRNA	34267483	34268711	.	-	.	ID=Os03t0817100-00;Name=Os03t0817100-00;Locus_id=Os03g0817100;Note=Uncharacterised protein family UPF0497%2C trans-membrane plant domain containing protein.;Transcript_evidence=CT837655 (DDBJ%2C Best hit);ORF_evidence=B9F6Z0 (UniProt);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);TENOR=Os03t0817100-00;KEGG=Os03t0817100-00
Chr03	irgsp1_rep	five_prime_UTR	34268625	34268711	.	-	.	Parent=Os03t0817100-00
Chr03	irgsp1_rep	CDS	34268359	34268624	.	-	0	Parent=Os03t0817100-00
Chr03	irgsp1_rep	CDS	34268143	34268281	.	-	1	Parent=Os03t0817100-00
Chr03	irgsp1_rep	CDS	34267842	34268033	.	-	0	Parent=Os03t0817100-00
Chr03	irgsp1_rep	three_prime_UTR	34267701	34267841	.	-	.	Parent=Os03t0817100-00
Chr03	irgsp1_rep	three_prime_UTR	34267483	34267688	.	-	.	Parent=Os03t0817100-00
Chr03	irgsp1_rep	mRNA	34271361	34273067	.	+	.	ID=Os03t0817200-01;Name=Os03t0817200-01;Locus_id=Os03g0817200;Oryzabase Gene Symbol Synonym(s)=OsANT2;Oryzabase Gene Name Synonym(s)=aromatic and neutral amino acid transporter 2;Note=Amino acid transporter%2C transmembrane domain containing protein.;Transcript_evidence=AK121940 (DDBJ%2C Best hit);ORF_evidence=B9F6Z1 (UniProt);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=J033107D18;Oryzabase=18516;Expression=AK121940;TENOR=Os03t0817200-01;KEGG=Os03t0817200-01
Chr03	irgsp1_rep	five_prime_UTR	34271361	34271399	.	+	.	Parent=Os03t0817200-01
Chr03	irgsp1_rep	CDS	34271400	34271600	.	+	0	Parent=Os03t0817200-01
Chr03	irgsp1_rep	CDS	34271709	34272392	.	+	0	Parent=Os03t0817200-01
Chr03	irgsp1_rep	CDS	34272477	34272848	.	+	0	Parent=Os03t0817200-01
Chr03	irgsp1_rep	three_prime_UTR	34272849	34273067	.	+	.	Parent=Os03t0817200-01
Chr03	irgsp1_rep	mRNA	34274740	34275371	.	-	.	ID=Os03t0817300-01;Name=Os03t0817300-01;Locus_id=Os03g0817300;RAP-DB Gene Symbol Synonym(s)=OsmiR390;Note=Primary microRNA of OsmiR390%3B Target gene(s): OsTAS3a (Oryza sativa Trans-Acting Short RNA precursor 3a siRNA%2C Os02g0610950)%2C OsSRK (Os02g0194400)%2C Promotion of lateral root growth%2C Negative regulator of Cd tolerance;Transcript_evidence=FP096701 (Phyllostachys edulis);ORF_evidence=NONE;Manual Curation=November 1%2C 2018;Literature_PMID=30373525,26973678;TENOR=Os03t0817300-00
Chr03	irgsp1_rep	exon	34274740	34275371	.	-	.	Parent=Os03t0817300-01
Chr03	irgsp1_rep	mRNA	34289859	34292782	.	-	.	ID=Os03t0817500-01;Name=Os03t0817500-01;Locus_id=Os03g0817500;CGSNL Gene Symbol=XOAT14;CGSNL Gene Name=XYLAN O-ACETYLTRANSFERASE 14;Oryzabase Gene Symbol Synonym(s)=OsTBL3%2C TBL3%2C OsXOAT14;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 3%2C xylan O-acetyltransferase 14;Note=Protein of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=AK111450 (DDBJ%2C Best hit);ORF_evidence=A3AP22 (UniProt);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=002-183-B10;Oryzabase=21458;Expression=AK111450;TENOR=Os03t0817500-01;KEGG=Os03t0817500-01
Chr03	irgsp1_rep	five_prime_UTR	34292705	34292782	.	-	.	Parent=Os03t0817500-01
Chr03	irgsp1_rep	CDS	34292217	34292704	.	-	0	Parent=Os03t0817500-01
Chr03	irgsp1_rep	CDS	34291370	34291541	.	-	1	Parent=Os03t0817500-01
Chr03	irgsp1_rep	CDS	34291067	34291263	.	-	0	Parent=Os03t0817500-01
Chr03	irgsp1_rep	CDS	34289977	34290541	.	-	1	Parent=Os03t0817500-01
Chr03	irgsp1_rep	three_prime_UTR	34289859	34289976	.	-	.	Parent=Os03t0817500-01
Chr03	irgsp1_rep	mRNA	34305136	34308744	.	+	.	ID=Os03t0817700-00;Name=Os03t0817700-00;Locus_id=Os03g0817700;Note=Hypothetical conserved gene.;Transcript_evidence=AK068070 (DDBJ%2C Secondary hit);ORF_evidence=Q84TW1 (UniProt);Expression=AK068070;TENOR=Os03t0817700-00;KEGG=Os03t0817700-00
Chr03	irgsp1_rep	five_prime_UTR	34305136	34305136	.	+	.	Parent=Os03t0817700-00
Chr03	irgsp1_rep	CDS	34305137	34305230	.	+	0	Parent=Os03t0817700-00
Chr03	irgsp1_rep	CDS	34305240	34305538	.	+	2	Parent=Os03t0817700-00
Chr03	irgsp1_rep	three_prime_UTR	34305539	34305852	.	+	.	Parent=Os03t0817700-00
Chr03	irgsp1_rep	three_prime_UTR	34305977	34306075	.	+	.	Parent=Os03t0817700-00
Chr03	irgsp1_rep	three_prime_UTR	34306138	34306244	.	+	.	Parent=Os03t0817700-00
Chr03	irgsp1_rep	three_prime_UTR	34307299	34307501	.	+	.	Parent=Os03t0817700-00
Chr03	irgsp1_rep	three_prime_UTR	34308404	34308744	.	+	.	Parent=Os03t0817700-00
Chr03	irgsp1_rep	mRNA	34311343	34314797	.	-	.	ID=Os03t0817800-01;Name=Os03t0817800-01;Locus_id=Os03g0817800;CGSNL Gene Symbol=XOAT11;CGSNL Gene Name=XYLAN O-ACETYLTRANSFERASE 11;Oryzabase Gene Symbol Synonym(s)=OsTBL6%2C TBL6%2C OsXOAT11;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 6%2C xylan O-acetyltransferase 11;Note=Protein of unknown function DUF231 domain containing protein.;Transcript_evidence=AK061407 (DDBJ%2C Best hit);ORF_evidence=XP_002884829.1 (RefSeq);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=006-306-A07;Oryzabase=21461;TENOR=Os03t0817800-01
Chr03	irgsp1_rep	five_prime_UTR	34314730	34314797	.	-	.	Parent=Os03t0817800-01
Chr03	irgsp1_rep	CDS	34314649	34314729	.	-	0	Parent=Os03t0817800-01
Chr03	irgsp1_rep	CDS	34314353	34314570	.	-	0	Parent=Os03t0817800-01
Chr03	irgsp1_rep	CDS	34312395	34312769	.	-	1	Parent=Os03t0817800-01
Chr03	irgsp1_rep	CDS	34311529	34312036	.	-	1	Parent=Os03t0817800-01
Chr03	irgsp1_rep	three_prime_UTR	34311343	34311528	.	-	.	Parent=Os03t0817800-01
Chr03	irgsp1_rep	mRNA	34311282	34314794	.	-	.	ID=Os03t0817800-02;Name=Os03t0817800-02;Locus_id=Os03g0817800;CGSNL Gene Symbol=XOAT11;CGSNL Gene Name=XYLAN O-ACETYLTRANSFERASE 11;Oryzabase Gene Symbol Synonym(s)=OsTBL6%2C TBL6%2C OsXOAT11;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 6%2C xylan O-acetyltransferase 11;Note=Conserved hypothetical protein.;Transcript_evidence=AK065071 (DDBJ%2C Best hit);ORF_evidence=Q84TV7 (UniProt);NIAS_FLcDNA=J013001K07;Oryzabase=21461;Expression=AK065071;TENOR=Os03t0817800-02;KEGG=Os03t0817800-02
Chr03	irgsp1_rep	five_prime_UTR	34314730	34314794	.	-	.	Parent=Os03t0817800-02
Chr03	irgsp1_rep	CDS	34314649	34314729	.	-	0	Parent=Os03t0817800-02
Chr03	irgsp1_rep	CDS	34314349	34314570	.	-	0	Parent=Os03t0817800-02
Chr03	irgsp1_rep	three_prime_UTR	34311282	34314348	.	-	.	Parent=Os03t0817800-02
Chr03	irgsp1_rep	mRNA	34311343	34314753	.	-	.	ID=Os03t0817800-03;Name=Os03t0817800-03;Locus_id=Os03g0817800;CGSNL Gene Symbol=XOAT11;CGSNL Gene Name=XYLAN O-ACETYLTRANSFERASE 11;Oryzabase Gene Symbol Synonym(s)=OsTBL6%2C TBL6%2C OsXOAT11;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 6%2C xylan O-acetyltransferase 11;Note=Protein of unknown function DUF231 domain containing protein.;Transcript_evidence=AK104541 (DDBJ%2C Best hit);ORF_evidence=Q84TV7 (UniProt);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=006-305-A10;Oryzabase=21461;TENOR=Os03t0817800-03
Chr03	irgsp1_rep	five_prime_UTR	34314730	34314753	.	-	.	Parent=Os03t0817800-03
Chr03	irgsp1_rep	CDS	34314649	34314729	.	-	0	Parent=Os03t0817800-03
Chr03	irgsp1_rep	CDS	34314353	34314570	.	-	0	Parent=Os03t0817800-03
Chr03	irgsp1_rep	CDS	34312395	34312769	.	-	1	Parent=Os03t0817800-03
Chr03	irgsp1_rep	CDS	34311529	34312036	.	-	1	Parent=Os03t0817800-03
Chr03	irgsp1_rep	three_prime_UTR	34311343	34311528	.	-	.	Parent=Os03t0817800-03
Chr03	irgsp1_rep	mRNA	34320518	34325381	.	-	.	ID=Os03t0817900-01;Name=Os03t0817900-01;Locus_id=Os03g0817900;CGSNL Gene Symbol=XOAT10;CGSNL Gene Name=XYLAN O-ACETYLTRANSFERASE 10;Oryzabase Gene Symbol Synonym(s)=OsTBL5%2C TBL5%2C OsXOAT10;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 5%2C xylan O-acetyltransferase 10;Note=Protein of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=AK071479 (DDBJ%2C Best hit);ORF_evidence=XP_002884829.1 (RefSeq);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=J023093O16;Oryzabase=21460;Expression=AK071479;TENOR=Os03t0817900-01;KEGG=Os03t0817900-01
Chr03	irgsp1_rep	five_prime_UTR	34325083	34325381	.	-	.	Parent=Os03t0817900-01
Chr03	irgsp1_rep	CDS	34324852	34325082	.	-	0	Parent=Os03t0817900-01
Chr03	irgsp1_rep	CDS	34324541	34324764	.	-	0	Parent=Os03t0817900-01
Chr03	irgsp1_rep	CDS	34322456	34322627	.	-	1	Parent=Os03t0817900-01
Chr03	irgsp1_rep	CDS	34321978	34322177	.	-	0	Parent=Os03t0817900-01
Chr03	irgsp1_rep	CDS	34321407	34321565	.	-	1	Parent=Os03t0817900-01
Chr03	irgsp1_rep	CDS	34320920	34321259	.	-	1	Parent=Os03t0817900-01
Chr03	irgsp1_rep	three_prime_UTR	34320518	34320919	.	-	.	Parent=Os03t0817900-01
Chr03	irgsp1_rep	mRNA	34327189	34331866	.	+	.	ID=Os03t0818000-00;Name=Os03t0818000-00;Locus_id=Os03g0818000;Note=Similar to myosin-like protein.;Transcript_evidence=FP091593 (DDBJ);ORF_evidence=NP_001151248.1 (RefSeq);TENOR=Os03t0818000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	34327189	34327290	.	+	.	Parent=Os03t0818000-00
Chr03	irgsp1_rep	CDS	34327291	34327877	.	+	0	Parent=Os03t0818000-00
Chr03	irgsp1_rep	CDS	34330708	34330880	.	+	1	Parent=Os03t0818000-00
Chr03	irgsp1_rep	CDS	34331505	34331866	.	+	2	Parent=Os03t0818000-00
Chr03	irgsp1_rep	mRNA	34333245	34333481	.	+	.	ID=Os03t0818050-00;Name=Os03t0818050-00;Locus_id=Os03g0818050;Note=Hypothetical conserved gene.;Transcript_evidence=EU969214 (DDBJ);ORF_evidence=B6TW49 (UniProt);TENOR=Os03t0818050-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	34333245	34333292	.	+	.	Parent=Os03t0818050-00
Chr03	irgsp1_rep	CDS	34333293	34333481	.	+	0	Parent=Os03t0818050-00
Chr03	irgsp1_rep	mRNA	34334756	34340124	.	+	.	ID=Os03t0818100-01;Name=Os03t0818100-01;Locus_id=Os03g0818100;Note=Histidine acid phosphatase family protein.;Transcript_evidence=AK121701 (DDBJ%2C Best hit);ORF_evidence=A0FHB3 (UniProt);GO=Molecular Function: acid phosphatase activity (GO:0003993);InterPro=Histidine phosphatase superfamily%2C clade-2 (IPR000560);NIAS_FLcDNA=J033073G17;Expression=AK121701;TENOR=Os03t0818100-01;KEGG=Os03t0818100-01
Chr03	irgsp1_rep	five_prime_UTR	34334756	34334834	.	+	.	Parent=Os03t0818100-01
Chr03	irgsp1_rep	CDS	34334835	34334974	.	+	0	Parent=Os03t0818100-01
Chr03	irgsp1_rep	CDS	34335142	34335226	.	+	1	Parent=Os03t0818100-01
Chr03	irgsp1_rep	CDS	34335543	34335842	.	+	0	Parent=Os03t0818100-01
Chr03	irgsp1_rep	CDS	34336608	34336766	.	+	0	Parent=Os03t0818100-01
Chr03	irgsp1_rep	CDS	34337266	34337406	.	+	0	Parent=Os03t0818100-01
Chr03	irgsp1_rep	CDS	34337492	34337548	.	+	0	Parent=Os03t0818100-01
Chr03	irgsp1_rep	CDS	34337948	34338086	.	+	0	Parent=Os03t0818100-01
Chr03	irgsp1_rep	CDS	34338368	34338472	.	+	2	Parent=Os03t0818100-01
Chr03	irgsp1_rep	CDS	34338573	34338790	.	+	2	Parent=Os03t0818100-01
Chr03	irgsp1_rep	CDS	34339394	34339435	.	+	0	Parent=Os03t0818100-01
Chr03	irgsp1_rep	CDS	34339550	34339723	.	+	0	Parent=Os03t0818100-01
Chr03	irgsp1_rep	three_prime_UTR	34339724	34340124	.	+	.	Parent=Os03t0818100-01
Chr03	irgsp1_rep	mRNA	34334799	34340133	.	+	.	ID=Os03t0818100-02;Name=Os03t0818100-02;Locus_id=Os03g0818100;Note=Similar to Multiple inositol polyphosphate phosphatase PhyIIa2.;Transcript_evidence=AK064366 (DDBJ%2C Best hit);ORF_evidence=A0FHB1 (UniProt);GO=Molecular Function: acid phosphatase activity (GO:0003993);InterPro=Histidine phosphatase superfamily%2C clade-2 (IPR000560);NIAS_FLcDNA=002-108-C03;Expression=AK064366;TENOR=Os03t0818100-02;KEGG=Os03t0818100-02
Chr03	irgsp1_rep	five_prime_UTR	34334799	34334834	.	+	.	Parent=Os03t0818100-02
Chr03	irgsp1_rep	CDS	34334835	34334974	.	+	0	Parent=Os03t0818100-02
Chr03	irgsp1_rep	CDS	34335142	34335226	.	+	1	Parent=Os03t0818100-02
Chr03	irgsp1_rep	CDS	34335543	34335842	.	+	0	Parent=Os03t0818100-02
Chr03	irgsp1_rep	CDS	34336608	34336766	.	+	0	Parent=Os03t0818100-02
Chr03	irgsp1_rep	CDS	34337274	34337291	.	+	0	Parent=Os03t0818100-02
Chr03	irgsp1_rep	three_prime_UTR	34337292	34337406	.	+	.	Parent=Os03t0818100-02
Chr03	irgsp1_rep	three_prime_UTR	34338737	34338790	.	+	.	Parent=Os03t0818100-02
Chr03	irgsp1_rep	three_prime_UTR	34339394	34339435	.	+	.	Parent=Os03t0818100-02
Chr03	irgsp1_rep	three_prime_UTR	34339550	34340133	.	+	.	Parent=Os03t0818100-02
Chr03	irgsp1_rep	mRNA	34340287	34343211	.	+	.	ID=Os03t0818200-01;Name=Os03t0818200-01;Locus_id=Os03g0818200;CGSNL Gene Symbol=CCR22;CGSNL Gene Name=CINNAMOYL-COA REDUCTASE 22;Oryzabase Gene Symbol Synonym(s)=OsCCR22;Oryzabase Gene Name Synonym(s)=Cinnamoyl-CoA reductase 22;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK058641 (DDBJ%2C Best hit);ORF_evidence=NP_001149377.1 (RefSeq);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-018-E01;Oryzabase=22248;Expression=AK058641;TENOR=Os03t0818200-01;KEGG=Os03t0818200-01
Chr03	irgsp1_rep	five_prime_UTR	34340287	34340343	.	+	.	Parent=Os03t0818200-01
Chr03	irgsp1_rep	CDS	34340344	34340479	.	+	0	Parent=Os03t0818200-01
Chr03	irgsp1_rep	CDS	34340563	34340747	.	+	2	Parent=Os03t0818200-01
Chr03	irgsp1_rep	CDS	34340858	34341046	.	+	0	Parent=Os03t0818200-01
Chr03	irgsp1_rep	CDS	34341723	34341885	.	+	0	Parent=Os03t0818200-01
Chr03	irgsp1_rep	CDS	34342460	34342646	.	+	2	Parent=Os03t0818200-01
Chr03	irgsp1_rep	CDS	34342881	34343025	.	+	1	Parent=Os03t0818200-01
Chr03	irgsp1_rep	three_prime_UTR	34343026	34343211	.	+	.	Parent=Os03t0818200-01
Chr03	irgsp1_rep	mRNA	34342456	34343021	.	-	.	ID=Os03t0818250-00;Name=Os03t0818250-00;Locus_id=Os03g0818250;Note=Non-protein coding transcript.;Transcript_evidence=EU947020 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0818250-00
Chr03	irgsp1_rep	exon	34342874	34343021	.	-	.	Parent=Os03t0818250-00
Chr03	irgsp1_rep	exon	34342456	34342627	.	-	.	Parent=Os03t0818250-00
Chr03	irgsp1_rep	mRNA	34343147	34346735	.	-	.	ID=Os03t0818300-01;Name=Os03t0818300-01;Locus_id=Os03g0818300;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK103363 (DDBJ%2C Best hit);ORF_evidence=B4FCH3 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-type%2C conserved site (IPR019786),Zinc finger%2C PHD-finger (IPR019787),Protein of unknown function DUF3594 (IPR021998);NIAS_FLcDNA=J033126N11;Expression=AK103363;TENOR=Os03t0818300-01;KEGG=Os03t0818300-01
Chr03	irgsp1_rep	five_prime_UTR	34346629	34346735	.	-	.	Parent=Os03t0818300-01
Chr03	irgsp1_rep	CDS	34346520	34346628	.	-	0	Parent=Os03t0818300-01
Chr03	irgsp1_rep	CDS	34346362	34346394	.	-	2	Parent=Os03t0818300-01
Chr03	irgsp1_rep	CDS	34346008	34346230	.	-	2	Parent=Os03t0818300-01
Chr03	irgsp1_rep	CDS	34343835	34343955	.	-	1	Parent=Os03t0818300-01
Chr03	irgsp1_rep	CDS	34343497	34343754	.	-	0	Parent=Os03t0818300-01
Chr03	irgsp1_rep	three_prime_UTR	34343147	34343496	.	-	.	Parent=Os03t0818300-01
Chr03	irgsp1_rep	mRNA	34347178	34349415	.	-	.	ID=Os03t0818400-01;Name=Os03t0818400-01;Locus_id=Os03g0818400;Oryzabase Gene Symbol Synonym(s)=RPS23%2C OsRPS23;Oryzabase Gene Name Synonym(s)=Ribosomal protein TS25%2C Ribosomal protein S23%2C ribosomal protein small subunit 23;Note=Similar to 40S ribosomal protein S23 (S12).;Transcript_evidence=AK102675 (DDBJ%2C Best hit);ORF_evidence=B4FBY5 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: small ribosomal subunit (GO:0015935),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S23%2C eukaryotic/archaeal (IPR005680),Ribosomal protein S12/S23 (IPR006032),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=J033102D01;Oryzabase=17694;TENOR=Os03t0818400-01
Chr03	irgsp1_rep	five_prime_UTR	34349250	34349415	.	-	.	Parent=Os03t0818400-01
Chr03	irgsp1_rep	CDS	34349245	34349249	.	-	0	Parent=Os03t0818400-01
Chr03	irgsp1_rep	CDS	34347972	34348127	.	-	1	Parent=Os03t0818400-01
Chr03	irgsp1_rep	CDS	34347769	34347895	.	-	1	Parent=Os03t0818400-01
Chr03	irgsp1_rep	CDS	34347552	34347692	.	-	0	Parent=Os03t0818400-01
Chr03	irgsp1_rep	three_prime_UTR	34347178	34347551	.	-	.	Parent=Os03t0818400-01
Chr03	irgsp1_rep	mRNA	34347178	34349346	.	-	.	ID=Os03t0818400-02;Name=Os03t0818400-02;Locus_id=Os03g0818400;Oryzabase Gene Symbol Synonym(s)=RPS23%2C OsRPS23;Oryzabase Gene Name Synonym(s)=Ribosomal protein TS25%2C Ribosomal protein S23%2C ribosomal protein small subunit 23;Note=Similar to 40S ribosomal protein S23 (S12).;Transcript_evidence=AK120081 (DDBJ%2C Best hit);ORF_evidence=B4FBY5 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: small ribosomal subunit (GO:0015935),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S23%2C eukaryotic/archaeal (IPR005680),Ribosomal protein S12/S23 (IPR006032),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=J013014C12;Oryzabase=17694;TENOR=Os03t0818400-02
Chr03	irgsp1_rep	five_prime_UTR	34349250	34349346	.	-	.	Parent=Os03t0818400-02
Chr03	irgsp1_rep	CDS	34349245	34349249	.	-	0	Parent=Os03t0818400-02
Chr03	irgsp1_rep	CDS	34347972	34348127	.	-	1	Parent=Os03t0818400-02
Chr03	irgsp1_rep	CDS	34347769	34347895	.	-	1	Parent=Os03t0818400-02
Chr03	irgsp1_rep	CDS	34347552	34347692	.	-	0	Parent=Os03t0818400-02
Chr03	irgsp1_rep	three_prime_UTR	34347178	34347551	.	-	.	Parent=Os03t0818400-02
Chr03	irgsp1_rep	mRNA	34350604	34352915	.	+	.	ID=Os03t0818700-00;Name=Os03t0818700-00;Locus_id=Os03g0818700;Note=Similar to MYB transcription factor.;Transcript_evidence=BT085714 (DDBJ);ORF_evidence=B4FMQ3 (UniProt);TENOR=Os03t0818700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	34350604	34350674	.	+	.	Parent=Os03t0818700-00
Chr03	irgsp1_rep	CDS	34350675	34350757	.	+	0	Parent=Os03t0818700-00
Chr03	irgsp1_rep	CDS	34352567	34352915	.	+	1	Parent=Os03t0818700-00
Chr03	irgsp1_rep	mRNA	34358193	34362334	.	+	.	ID=Os03t0818800-01;Name=Os03t0818800-01;Locus_id=Os03g0818800;RAP-DB Gene Symbol Synonym(s)=AP2/EREBP#033%2C AP2/EREBP33%2C IDS1%2C OsIDS1;RAP-DB Gene Name Synonym(s)=APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 33%2C APETALA2/ethylene-responsive element binding protein 33%2C INDETERMINATE SPIKELET 1%2C OsINDETERMINATE SPIKELET 1;CGSNL Gene Symbol=IDS1;CGSNL Gene Name=INDETERMINATE SPIKELET 1;Oryzabase Gene Symbol Synonym(s)=OsIDS1%2C AP2/EREBP#033%2C AP2/EREBP33%2C AP2-33/IDS1%2C AP2-33%2C AP2-2%2C DLN104%2C OsDLN104;Oryzabase Gene Name Synonym(s)=OsINDETERMINATE SPIKELET 1%2C INDETERMINATE SPIKELET1%2C APETALA2/ethylene-responsive element binding protein 33%2C APETALA2-2%2C DLN repressor 104%2C DLN motif protein 104;Note=AP2 domain containing transcription factor%2C Control of inflorescence architecture%2C Floral meristem establishment;Transcript_evidence=AY685113 (Dongjin);ORF_evidence=Q84TB5;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=DNA-binding domain (IPR016177),AP2/ERF domain (IPR001471);Manual Curation=March 19%2C 2015;Literature_PMID=22003982,17144896;Oryzabase=10888;TENOR=Os03t0818800-00
Chr03	irgsp1_rep	five_prime_UTR	34358193	34358766	.	+	.	Parent=Os03t0818800-01
Chr03	irgsp1_rep	CDS	34358767	34359173	.	+	0	Parent=Os03t0818800-01
Chr03	irgsp1_rep	CDS	34359274	34359299	.	+	1	Parent=Os03t0818800-01
Chr03	irgsp1_rep	CDS	34359412	34359442	.	+	2	Parent=Os03t0818800-01
Chr03	irgsp1_rep	CDS	34359575	34359662	.	+	1	Parent=Os03t0818800-01
Chr03	irgsp1_rep	CDS	34359775	34359920	.	+	0	Parent=Os03t0818800-01
Chr03	irgsp1_rep	CDS	34360306	34360350	.	+	1	Parent=Os03t0818800-01
Chr03	irgsp1_rep	CDS	34360444	34360547	.	+	1	Parent=Os03t0818800-01
Chr03	irgsp1_rep	CDS	34360639	34360775	.	+	2	Parent=Os03t0818800-01
Chr03	irgsp1_rep	CDS	34361065	34361175	.	+	0	Parent=Os03t0818800-01
Chr03	irgsp1_rep	CDS	34361869	34362078	.	+	0	Parent=Os03t0818800-01
Chr03	irgsp1_rep	three_prime_UTR	34362079	34362334	.	+	.	Parent=Os03t0818800-01
Chr03	irgsp1_rep	mRNA	34358193	34362334	.	+	.	ID=Os03t0818800-02;Name=Os03t0818800-02;Locus_id=Os03g0818800;CGSNL Gene Symbol=IDS1;CGSNL Gene Name=INDETERMINATE SPIKELET 1;Oryzabase Gene Symbol Synonym(s)=OsIDS1%2C AP2/EREBP#033%2C AP2/EREBP33%2C AP2-33/IDS1%2C AP2-33%2C AP2-2%2C DLN104%2C OsDLN104;Oryzabase Gene Name Synonym(s)=OsINDETERMINATE SPIKELET 1%2C INDETERMINATE SPIKELET1%2C APETALA2/ethylene-responsive element binding protein 33%2C APETALA2-2%2C DLN repressor 104%2C DLN motif protein 104;Note=Similar to APETALA2-like protein.;Transcript_evidence=CT836522 (DDBJ%2C Best hit);ORF_evidence=Q5YLQ9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);Oryzabase=10888;KEGG=Os03t0818800-02
Chr03	irgsp1_rep	five_prime_UTR	34358193	34358766	.	+	.	Parent=Os03t0818800-02
Chr03	irgsp1_rep	CDS	34358767	34359173	.	+	0	Parent=Os03t0818800-02
Chr03	irgsp1_rep	CDS	34359274	34359299	.	+	1	Parent=Os03t0818800-02
Chr03	irgsp1_rep	CDS	34359412	34359442	.	+	2	Parent=Os03t0818800-02
Chr03	irgsp1_rep	CDS	34359575	34359662	.	+	1	Parent=Os03t0818800-02
Chr03	irgsp1_rep	CDS	34359775	34359920	.	+	0	Parent=Os03t0818800-02
Chr03	irgsp1_rep	CDS	34360306	34360350	.	+	1	Parent=Os03t0818800-02
Chr03	irgsp1_rep	CDS	34360456	34360547	.	+	1	Parent=Os03t0818800-02
Chr03	irgsp1_rep	CDS	34360639	34360775	.	+	2	Parent=Os03t0818800-02
Chr03	irgsp1_rep	CDS	34361065	34361175	.	+	0	Parent=Os03t0818800-02
Chr03	irgsp1_rep	CDS	34361869	34362078	.	+	0	Parent=Os03t0818800-02
Chr03	irgsp1_rep	three_prime_UTR	34362079	34362334	.	+	.	Parent=Os03t0818800-02
Chr03	irgsp1_rep	mRNA	34378157	34382354	.	+	.	ID=Os03t0819100-01;Name=Os03t0819100-01;Locus_id=Os03g0819100;Note=Peptidase M1%2C membrane alanine aminopeptidase family protein.;Transcript_evidence=AK073744 (DDBJ%2C Best hit);ORF_evidence=XP_002873616.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Biological Process: leukotriene biosynthetic process (GO:0019370),Molecular Function: binding (GO:0005488),Molecular Function: metallopeptidase activity (GO:0008237),Molecular Function: zinc ion binding (GO:0008270);InterPro=Peptidase M1%2C alanine aminopeptidase/leukotriene A4 hydrolase (IPR001930),Peptidase M1%2C membrane alanine aminopeptidase%2C N-terminal (IPR014782),Peptidase M1%2C leukotriene A4 hydrolase%2C aminopeptidase C-terminal (IPR015211),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033068J12;Expression=AK073744;TENOR=Os03t0819100-01;KEGG=Os03t0819100-01 (EC:3.3.2.6)
Chr03	irgsp1_rep	five_prime_UTR	34378157	34378286	.	+	.	Parent=Os03t0819100-01
Chr03	irgsp1_rep	CDS	34378287	34379270	.	+	0	Parent=Os03t0819100-01
Chr03	irgsp1_rep	CDS	34379749	34379982	.	+	0	Parent=Os03t0819100-01
Chr03	irgsp1_rep	CDS	34380094	34380420	.	+	0	Parent=Os03t0819100-01
Chr03	irgsp1_rep	CDS	34381840	34382130	.	+	0	Parent=Os03t0819100-01
Chr03	irgsp1_rep	three_prime_UTR	34382131	34382354	.	+	.	Parent=Os03t0819100-01
Chr03	irgsp1_rep	mRNA	34382411	34382483	.	-	.	ID=Os03t0819201-00;Name=Os03t0819201-00;Locus_id=Os03g0819201;Note=Non-protein coding transcript.;Transcript_evidence=X06284 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0819201-00
Chr03	irgsp1_rep	exon	34382411	34382483	.	-	.	Parent=Os03t0819201-00
Chr03	irgsp1_rep	mRNA	34382759	34384359	.	+	.	ID=Os03t0819300-01;Name=Os03t0819300-01;Locus_id=Os03g0819300;Note=Similar to Annexin A7 (Annexin VII) (Synexin) (Fragment).;Transcript_evidence=AK072873 (DDBJ%2C Best hit);ORF_evidence=Q84TC1 (UniProt);NIAS_FLcDNA=J023145D16;Expression=AK072873;TENOR=Os03t0819300-01;KEGG=Os03t0819300-01
Chr03	irgsp1_rep	five_prime_UTR	34382759	34382869	.	+	.	Parent=Os03t0819300-01
Chr03	irgsp1_rep	five_prime_UTR	34382952	34382975	.	+	.	Parent=Os03t0819300-01
Chr03	irgsp1_rep	CDS	34382976	34383306	.	+	0	Parent=Os03t0819300-01
Chr03	irgsp1_rep	CDS	34383550	34383761	.	+	2	Parent=Os03t0819300-01
Chr03	irgsp1_rep	three_prime_UTR	34383762	34384359	.	+	.	Parent=Os03t0819300-01
Chr03	irgsp1_rep	mRNA	34386215	34388174	.	-	.	ID=Os03t0819400-01;Name=Os03t0819400-01;Locus_id=Os03g0819400;CGSNL Gene Symbol=HMP22;CGSNL Gene Name=HEAVY METAL-ASSOCIATED PROTEIN 22;Oryzabase Gene Symbol Synonym(s)=OsHMP22;Oryzabase Gene Name Synonym(s)=Heavy metal-associated protein 22;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK070263 (DDBJ%2C Best hit);ORF_evidence=B6T8A4 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);NIAS_FLcDNA=J023043H06;Oryzabase=23543;Expression=AK070263;TENOR=Os03t0819400-01;KEGG=Os03t0819400-01
Chr03	irgsp1_rep	five_prime_UTR	34388083	34388174	.	-	.	Parent=Os03t0819400-01
Chr03	irgsp1_rep	CDS	34387687	34388082	.	-	0	Parent=Os03t0819400-01
Chr03	irgsp1_rep	CDS	34387047	34387122	.	-	0	Parent=Os03t0819400-01
Chr03	irgsp1_rep	CDS	34386584	34386723	.	-	2	Parent=Os03t0819400-01
Chr03	irgsp1_rep	three_prime_UTR	34386215	34386583	.	-	.	Parent=Os03t0819400-01
Chr03	irgsp1_rep	mRNA	34386571	34388233	.	+	.	ID=Os03t0819450-00;Name=Os03t0819450-00;Locus_id=Os03g0819450;Note=Hypothetical gene.;Transcript_evidence=EU942457 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0819450-00;KEGG=Os03t0819450-00
Chr03	irgsp1_rep	five_prime_UTR	34386571	34386792	.	+	.	Parent=Os03t0819450-00
Chr03	irgsp1_rep	five_prime_UTR	34387019	34387178	.	+	.	Parent=Os03t0819450-00
Chr03	irgsp1_rep	five_prime_UTR	34387704	34387884	.	+	.	Parent=Os03t0819450-00
Chr03	irgsp1_rep	CDS	34387885	34388112	.	+	0	Parent=Os03t0819450-00
Chr03	irgsp1_rep	three_prime_UTR	34388113	34388233	.	+	.	Parent=Os03t0819450-00
Chr03	irgsp1_rep	mRNA	34394508	34395638	.	-	.	ID=Os03t0819600-01;Name=Os03t0819600-01;Locus_id=Os03g0819600;RAP-DB Gene Symbol Synonym(s)=OsCHI%2C GH1%2C gh1;RAP-DB Gene Name Synonym(s)=chalcone isomerase%2C golden hull and internode 1;Oryzabase Gene Symbol Synonym(s)=gh1%2C GH1%2C OsGH1%2C OsCHI%2C Cfi%2C CHI;Oryzabase Gene Name Synonym(s)=gold hull and internode 1%2C chalcone isomerase%2C chalcone flavonone isomerase%2C chalcone-flavonone isomerase;Note=Chalcone isomerase (EC 5.5.1.6)%2C Flavonoid biosynthesis;Transcript_evidence=AK061390;ORF_evidence=Q84T92;GO=Molecular Function: intramolecular lyase activity (GO:0016872);InterPro=Chalcone isomerase%2C 3-layer sandwich (IPR016088),Chalcone isomerase superfamily (IPR036298),Chalcone isomerase%2C orthogonal bundle domain superfamily (IPR016089),Chalcone isomerase (IPR016087);NIAS_FLcDNA=006-305-C05;Manual Curation=August 6%2C 2020;Literature_PMID=22286805;Oryzabase=10365;TENOR=Os03t0819600-01;Subcellular location=endoplasmic reticulum (GO:0005783)
Chr03	irgsp1_rep	five_prime_UTR	34395582	34395638	.	-	.	Parent=Os03t0819600-01
Chr03	irgsp1_rep	CDS	34395485	34395581	.	-	0	Parent=Os03t0819600-01
Chr03	irgsp1_rep	CDS	34395226	34395387	.	-	2	Parent=Os03t0819600-01
Chr03	irgsp1_rep	CDS	34394926	34395149	.	-	2	Parent=Os03t0819600-01
Chr03	irgsp1_rep	CDS	34394626	34394844	.	-	0	Parent=Os03t0819600-01
Chr03	irgsp1_rep	three_prime_UTR	34394508	34394625	.	-	.	Parent=Os03t0819600-01
Chr03	irgsp1_rep	mRNA	34394521	34395608	.	-	.	ID=Os03t0819600-02;Name=Os03t0819600-02;Locus_id=Os03g0819600;Oryzabase Gene Symbol Synonym(s)=gh1%2C GH1%2C OsGH1%2C OsCHI%2C Cfi%2C CHI;Oryzabase Gene Name Synonym(s)=gold hull and internode 1%2C chalcone isomerase%2C chalcone flavonone isomerase%2C chalcone-flavonone isomerase;Note=Chalcone isomerase (EC 5.5.1.6).;Transcript_evidence=AK104791 (DDBJ%2C Best hit);ORF_evidence=Q84T92 (UniProt);GO=Biological Process: flavonoid biosynthetic process (GO:0009813),Biological Process: cellular modified amino acid biosynthetic process (GO:0042398),Molecular Function: intramolecular lyase activity (GO:0016872),Molecular Function: chalcone isomerase activity (GO:0045430);InterPro=Chalcone isomerase%2C subgroup (IPR003466),Chalcone isomerase (IPR016087),Chalcone isomerase%2C 3-layer sandwich (IPR016088);NIAS_FLcDNA=001-039-F07;Oryzabase=10365;TENOR=Os03t0819600-02
Chr03	irgsp1_rep	five_prime_UTR	34395582	34395608	.	-	.	Parent=Os03t0819600-02
Chr03	irgsp1_rep	CDS	34395485	34395581	.	-	0	Parent=Os03t0819600-02
Chr03	irgsp1_rep	CDS	34395226	34395387	.	-	2	Parent=Os03t0819600-02
Chr03	irgsp1_rep	CDS	34394926	34395149	.	-	2	Parent=Os03t0819600-02
Chr03	irgsp1_rep	CDS	34394626	34394844	.	-	0	Parent=Os03t0819600-02
Chr03	irgsp1_rep	three_prime_UTR	34394521	34394625	.	-	.	Parent=Os03t0819600-02
Chr03	irgsp1_rep	mRNA	34396969	34400184	.	-	.	ID=Os03t0819700-01;Name=Os03t0819700-01;Locus_id=Os03g0819700;Note=Conserved hypothetical protein.;Transcript_evidence=AK067854 (DDBJ%2C Best hit);ORF_evidence=Q84TB2 (UniProt);NIAS_FLcDNA=J013121H15;Expression=AK067854;TENOR=Os03t0819700-01;KEGG=Os03t0819700-01
Chr03	irgsp1_rep	CDS	34400124	34400184	.	-	0	Parent=Os03t0819700-01
Chr03	irgsp1_rep	CDS	34399427	34399518	.	-	2	Parent=Os03t0819700-01
Chr03	irgsp1_rep	CDS	34398485	34399300	.	-	0	Parent=Os03t0819700-01
Chr03	irgsp1_rep	CDS	34398169	34398301	.	-	0	Parent=Os03t0819700-01
Chr03	irgsp1_rep	CDS	34397416	34398074	.	-	2	Parent=Os03t0819700-01
Chr03	irgsp1_rep	three_prime_UTR	34396969	34397415	.	-	.	Parent=Os03t0819700-01
Chr03	irgsp1_rep	mRNA	34407093	34410374	.	+	.	ID=Os03t0819900-01;Name=Os03t0819900-01;Locus_id=Os03g0819900;Oryzabase Gene Symbol Synonym(s)=OsRab8A5%2C OsRab8a;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab8A5;Note=Similar to RAB8C.;Transcript_evidence=AK112029 (DDBJ%2C Best hit),AK111912 (DDBJ%2C Best hit);ORF_evidence=B4FTQ4 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: intracellular protein transport (GO:0006886),Biological Process: nucleocytoplasmic transport (GO:0006913),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Cellular Component: membrane (GO:0016020),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Ran GTPase (IPR002041),Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C Ras type (IPR020849),Small GTPase superfamily%2C ARF type (IPR024156);NIAS_FLcDNA=001-039-C11,J033126H16;Oryzabase=11094;TENOR=Os03t0819900-01
Chr03	irgsp1_rep	five_prime_UTR	34407093	34407259	.	+	.	Parent=Os03t0819900-01
Chr03	irgsp1_rep	five_prime_UTR	34407341	34407364	.	+	.	Parent=Os03t0819900-01
Chr03	irgsp1_rep	CDS	34407365	34407437	.	+	0	Parent=Os03t0819900-01
Chr03	irgsp1_rep	CDS	34408828	34408900	.	+	2	Parent=Os03t0819900-01
Chr03	irgsp1_rep	CDS	34408986	34409086	.	+	1	Parent=Os03t0819900-01
Chr03	irgsp1_rep	CDS	34409172	34409237	.	+	2	Parent=Os03t0819900-01
Chr03	irgsp1_rep	CDS	34409326	34409423	.	+	2	Parent=Os03t0819900-01
Chr03	irgsp1_rep	CDS	34409740	34409802	.	+	0	Parent=Os03t0819900-01
Chr03	irgsp1_rep	CDS	34409948	34410040	.	+	0	Parent=Os03t0819900-01
Chr03	irgsp1_rep	CDS	34410111	34410188	.	+	0	Parent=Os03t0819900-01
Chr03	irgsp1_rep	three_prime_UTR	34410189	34410374	.	+	.	Parent=Os03t0819900-01
Chr03	irgsp1_rep	mRNA	34412840	34419139	.	+	.	ID=Os03t0820100-01;Name=Os03t0820100-01;Locus_id=Os03g0820100;Note=Similar to Auxin-resistance protein AXR1.;Transcript_evidence=AK111534 (DDBJ%2C Best hit);ORF_evidence=Q10BF0 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824);InterPro=UBA/THIF-type NAD/FAD binding fold (IPR000594),Molybdenum cofactor biosynthesis%2C MoeB (IPR009036),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013034D14;Expression=AK111534;TENOR=Os03t0820100-01;KEGG=Os03t0820100-01
Chr03	irgsp1_rep	five_prime_UTR	34412840	34412990	.	+	.	Parent=Os03t0820100-01
Chr03	irgsp1_rep	CDS	34412991	34413052	.	+	0	Parent=Os03t0820100-01
Chr03	irgsp1_rep	CDS	34413681	34413853	.	+	1	Parent=Os03t0820100-01
Chr03	irgsp1_rep	CDS	34413949	34414112	.	+	2	Parent=Os03t0820100-01
Chr03	irgsp1_rep	CDS	34414421	34414531	.	+	0	Parent=Os03t0820100-01
Chr03	irgsp1_rep	CDS	34414722	34414801	.	+	0	Parent=Os03t0820100-01
Chr03	irgsp1_rep	CDS	34414903	34415053	.	+	1	Parent=Os03t0820100-01
Chr03	irgsp1_rep	CDS	34415150	34415243	.	+	0	Parent=Os03t0820100-01
Chr03	irgsp1_rep	CDS	34415835	34415923	.	+	2	Parent=Os03t0820100-01
Chr03	irgsp1_rep	CDS	34417086	34417159	.	+	0	Parent=Os03t0820100-01
Chr03	irgsp1_rep	CDS	34417273	34417435	.	+	1	Parent=Os03t0820100-01
Chr03	irgsp1_rep	CDS	34417859	34417944	.	+	0	Parent=Os03t0820100-01
Chr03	irgsp1_rep	CDS	34418425	34418508	.	+	1	Parent=Os03t0820100-01
Chr03	irgsp1_rep	CDS	34418600	34418780	.	+	1	Parent=Os03t0820100-01
Chr03	irgsp1_rep	CDS	34418864	34418947	.	+	0	Parent=Os03t0820100-01
Chr03	irgsp1_rep	three_prime_UTR	34418948	34419139	.	+	.	Parent=Os03t0820100-01
Chr03	irgsp1_rep	mRNA	34424180	34425030	.	+	.	ID=Os03t0820300-01;Name=Os03t0820300-01;Locus_id=Os03g0820300;RAP-DB Gene Symbol Synonym(s)=ZFP182;RAP-DB Gene Name Synonym(s)=zinc finger protein ZFP182%2C zinc finger protein 182;Oryzabase Gene Symbol Synonym(s)=ZFP182;Oryzabase Gene Name Synonym(s)=zinc finger protein ZFP182%2C zinc finger protein 182;Note=TFIIIA-type zinc finger protein%2C Transcription activator%2C Abiotic stress tolerance;Transcript_evidence=AK068861;ORF_evidence=Q84T96;GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C C2H2-like (IPR015880),Zinc finger%2C C2H2 (IPR007087);NIAS_FLcDNA=J013170H07;Manual Curation=March 6%2C 2017;Literature_PMID=22930448,17434609;Oryzabase=14683;Expression=AK068861;TENOR=Os03t0820300-01;KEGG=Os03t0820300-01;Subcellular location=nucleus (GO:0005634)
Chr03	irgsp1_rep	five_prime_UTR	34424180	34424257	.	+	.	Parent=Os03t0820300-01
Chr03	irgsp1_rep	CDS	34424258	34424770	.	+	0	Parent=Os03t0820300-01
Chr03	irgsp1_rep	three_prime_UTR	34424771	34425030	.	+	.	Parent=Os03t0820300-01
Chr03	irgsp1_rep	mRNA	34427704	34428391	.	+	.	ID=Os03t0820400-01;Name=Os03t0820400-01;Locus_id=Os03g0820400;CGSNL Gene Symbol=ZFP15;CGSNL Gene Name=ZINC FINGER PROTEIN 15;Oryzabase Gene Symbol Synonym(s)=ZFP 15;Oryzabase Gene Name Synonym(s)=zinc finger protein ZFP15%2C ZOS3-22-C2H2 zinc finger protein;Note=Similar to ZPT2-13.;Transcript_evidence=AK119690 (DDBJ%2C Best hit);ORF_evidence=NP_001152566.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=002-157-B05;Oryzabase=12119;Expression=AK119690;TENOR=Os03t0820400-01;KEGG=Os03t0820400-01
Chr03	irgsp1_rep	five_prime_UTR	34427704	34427825	.	+	.	Parent=Os03t0820400-01
Chr03	irgsp1_rep	CDS	34427826	34428260	.	+	0	Parent=Os03t0820400-01
Chr03	irgsp1_rep	three_prime_UTR	34428261	34428391	.	+	.	Parent=Os03t0820400-01
Chr03	irgsp1_rep	mRNA	34430457	34431364	.	+	.	ID=Os03t0820500-01;Name=Os03t0820500-01;Locus_id=Os03g0820500;RAP-DB Gene Symbol Synonym(s)=OsADF3;RAP-DB Gene Name Synonym(s)=actin depolymerizing factor 3;CGSNL Gene Symbol=ADF3;CGSNL Gene Name=ACTIN DEPOLYMERIZING FACTOR 3;Oryzabase Gene Symbol Synonym(s)=OsADF3;Oryzabase Gene Name Synonym(s)=actin depolymerizing factor 3;Note=Actin depolymerizing factor%2C Actin-binding protein%2C Abiotic stress response;Transcript_evidence=AK241081;ORF_evidence=Q84TB6;GO=Biological Process: actin filament depolymerization (GO:0030042),Molecular Function: actin binding (GO:0003779),Cellular Component: intracellular (GO:0005622),Cellular Component: actin cytoskeleton (GO:0015629);InterPro=ADF-H/Gelsolin-like domain superfamily (IPR029006),ADF/Cofilin (IPR017904),Actin-depolymerising factor homology domain (IPR002108);NIAS_FLcDNA=J065073D04;Manual Curation=August 28%2C 2018;Literature_PMID=24279948;Oryzabase=12502;TENOR=Os03t0820500-01;KEGG=Os03t0820500-01;Subcellular location=nucleus (GO:0005634)
Chr03	irgsp1_rep	five_prime_UTR	34430457	34430583	.	+	.	Parent=Os03t0820500-01
Chr03	irgsp1_rep	CDS	34430584	34430586	.	+	0	Parent=Os03t0820500-01
Chr03	irgsp1_rep	CDS	34430751	34431200	.	+	0	Parent=Os03t0820500-01
Chr03	irgsp1_rep	three_prime_UTR	34431201	34431364	.	+	.	Parent=Os03t0820500-01
Chr03	irgsp1_rep	mRNA	34431700	34434187	.	+	.	ID=Os03t0820600-01;Name=Os03t0820600-01;Locus_id=Os03g0820600;CGSNL Gene Symbol=ADF4;CGSNL Gene Name=ACTIN DEPOLYMERIZING FACTOR 4;Oryzabase Gene Symbol Synonym(s)=OsADF4%2C OsADF;Oryzabase Gene Name Synonym(s)=actin depolymerizing factor 4;Note=Similar to Actin-depolymerizing factor 3 (ADF 3) (ZmABP3) (ZmADF3).;Transcript_evidence=AK058941 (DDBJ%2C Best hit);ORF_evidence=Q84TB3 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: actin binding (GO:0003779);InterPro=Actin-binding%2C cofilin/tropomyosin type (IPR002108);NIAS_FLcDNA=001-009-H02;Oryzabase=12503;Expression=AK058941;TENOR=Os03t0820600-01;KEGG=Os03t0820600-01
Chr03	irgsp1_rep	five_prime_UTR	34431700	34431816	.	+	.	Parent=Os03t0820600-01
Chr03	irgsp1_rep	CDS	34431817	34431819	.	+	0	Parent=Os03t0820600-01
Chr03	irgsp1_rep	CDS	34433461	34433726	.	+	0	Parent=Os03t0820600-01
Chr03	irgsp1_rep	CDS	34433816	34433966	.	+	1	Parent=Os03t0820600-01
Chr03	irgsp1_rep	three_prime_UTR	34433967	34434187	.	+	.	Parent=Os03t0820600-01
Chr03	irgsp1_rep	mRNA	34433852	34434224	.	+	.	ID=Os03t0820600-02;Name=Os03t0820600-02;Locus_id=Os03g0820600;CGSNL Gene Symbol=ADF4;CGSNL Gene Name=ACTIN DEPOLYMERIZING FACTOR 4;Oryzabase Gene Symbol Synonym(s)=OsADF4%2C OsADF;Oryzabase Gene Name Synonym(s)=actin depolymerizing factor 4;Note=Similar to cDNA clone:001-009-H02%2C full insert sequence.;Transcript_evidence=AK105336 (DDBJ%2C Best hit);ORF_evidence=B7E3A0 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: actin binding (GO:0003779);InterPro=Actin-binding%2C cofilin/tropomyosin type (IPR002108);NIAS_FLcDNA=001-118-E06;Oryzabase=12503;Expression=AK105336;TENOR=Os03t0820600-02;KEGG=Os03t0820600-02
Chr03	irgsp1_rep	five_prime_UTR	34433852	34433852	.	+	.	Parent=Os03t0820600-02
Chr03	irgsp1_rep	CDS	34433853	34433966	.	+	0	Parent=Os03t0820600-02
Chr03	irgsp1_rep	three_prime_UTR	34433967	34434224	.	+	.	Parent=Os03t0820600-02
Chr03	irgsp1_rep	mRNA	34435014	34438452	.	-	.	ID=Os03t0820700-01;Name=Os03t0820700-01;Locus_id=Os03g0820700;Note=Zinc finger%2C CCHC-type domain containing protein.;Transcript_evidence=AK100155 (DDBJ%2C Best hit);ORF_evidence=B8AMB3 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Zinc finger%2C CCHC retroviral-type (IPR013084);NIAS_FLcDNA=J023019E12;TENOR=Os03t0820700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	34438028	34438452	.	-	.	Parent=Os03t0820700-01
Chr03	irgsp1_rep	five_prime_UTR	34437813	34437852	.	-	.	Parent=Os03t0820700-01
Chr03	irgsp1_rep	CDS	34437592	34437812	.	-	0	Parent=Os03t0820700-01
Chr03	irgsp1_rep	CDS	34435426	34435933	.	-	1	Parent=Os03t0820700-01
Chr03	irgsp1_rep	three_prime_UTR	34435014	34435425	.	-	.	Parent=Os03t0820700-01
Chr03	irgsp1_rep	mRNA	34439354	34444387	.	-	.	ID=Os03t0820900-01;Name=Os03t0820900-01;Locus_id=Os03g0820900;Note=Cellular retinaldehyde-binding/triple function%2C C-terminal domain containing protein.;Transcript_evidence=AK072450 (DDBJ%2C Best hit);ORF_evidence=NP_001151588.1 (RefSeq);InterPro=Cellular retinaldehyde-binding/triple function%2C C-terminal (IPR001251);NIAS_FLcDNA=J023118D10;Expression=AK072450;TENOR=Os03t0820900-01;KEGG=Os03t0820900-01
Chr03	irgsp1_rep	five_prime_UTR	34444120	34444387	.	-	.	Parent=Os03t0820900-01
Chr03	irgsp1_rep	five_prime_UTR	34443392	34443505	.	-	.	Parent=Os03t0820900-01
Chr03	irgsp1_rep	CDS	34443056	34443391	.	-	0	Parent=Os03t0820900-01
Chr03	irgsp1_rep	CDS	34442074	34442219	.	-	0	Parent=Os03t0820900-01
Chr03	irgsp1_rep	CDS	34441802	34441897	.	-	1	Parent=Os03t0820900-01
Chr03	irgsp1_rep	CDS	34441091	34441347	.	-	1	Parent=Os03t0820900-01
Chr03	irgsp1_rep	CDS	34440554	34440774	.	-	2	Parent=Os03t0820900-01
Chr03	irgsp1_rep	CDS	34439910	34440278	.	-	0	Parent=Os03t0820900-01
Chr03	irgsp1_rep	three_prime_UTR	34439354	34439909	.	-	.	Parent=Os03t0820900-01
Chr03	irgsp1_rep	mRNA	34439926	34443391	.	+	.	ID=Os03t0821000-00;Name=Os03t0821000-00;Locus_id=Os03g0821000;Note=Hypothetical protein.;Transcript_evidence=tplb0047a16 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0821000-00
Chr03	irgsp1_rep	five_prime_UTR	34439926	34440268	.	+	.	Parent=Os03t0821000-00
Chr03	irgsp1_rep	five_prime_UTR	34440540	34440697	.	+	.	Parent=Os03t0821000-00
Chr03	irgsp1_rep	CDS	34440698	34440760	.	+	0	Parent=Os03t0821000-00
Chr03	irgsp1_rep	CDS	34441078	34441320	.	+	0	Parent=Os03t0821000-00
Chr03	irgsp1_rep	three_prime_UTR	34441321	34441354	.	+	.	Parent=Os03t0821000-00
Chr03	irgsp1_rep	three_prime_UTR	34441809	34441844	.	+	.	Parent=Os03t0821000-00
Chr03	irgsp1_rep	three_prime_UTR	34442012	34442208	.	+	.	Parent=Os03t0821000-00
Chr03	irgsp1_rep	three_prime_UTR	34443046	34443391	.	+	.	Parent=Os03t0821000-00
Chr03	irgsp1_rep	mRNA	34446327	34450665	.	+	.	ID=Os03t0821100-01;Name=Os03t0821100-01;Locus_id=Os03g0821100;Oryzabase Gene Symbol Synonym(s)=OsHSP70%2C hsp70%2C OsMed37_4%2C Med37_4;Oryzabase Gene Name Synonym(s)=heat shock protein 70%2C heat-shock protein 70%2C HEAT SHOCK PROTEIN 70KD%2C Mediator 37_4;Note=Similar to Non-cell-autonomous heat shock cognate protein 70.;Transcript_evidence=AK069740 (DDBJ%2C Best hit),AK102784 (DDBJ%2C Best hit);ORF_evidence=D2D320 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Heat shock protein Hsp70 (IPR001023),Heat shock protein 70 (IPR013126),Heat shock protein 70%2C conserved site (IPR018181);NIAS_FLcDNA=J023030D03,J033107K19;Oryzabase=18148;Expression=AK069740;TENOR=Os03t0821100-01;KEGG=Os03t0821100-01
Chr03	irgsp1_rep	five_prime_UTR	34446327	34446455	.	+	.	Parent=Os03t0821100-01
Chr03	irgsp1_rep	CDS	34446456	34446672	.	+	0	Parent=Os03t0821100-01
Chr03	irgsp1_rep	CDS	34448731	34450463	.	+	2	Parent=Os03t0821100-01
Chr03	irgsp1_rep	three_prime_UTR	34450464	34450665	.	+	.	Parent=Os03t0821100-01
Chr03	irgsp1_rep	mRNA	34448736	34450183	.	-	.	ID=Os03t0821150-00;Name=Os03t0821150-00;Locus_id=Os03g0821150;Note=Glutamate dehydrogenase%2C NAD-specific domain containing protein.;Transcript_evidence=tplb0023b01 (Wheat FLcDNA);ORF_evidence=longestORF;InterPro=Glutamate dehydrogenase%2C NAD-specific (IPR019651);TENOR=Os03t0821150-00
Chr03	irgsp1_rep	five_prime_UTR	34450182	34450183	.	-	.	Parent=Os03t0821150-00
Chr03	irgsp1_rep	CDS	34449552	34450181	.	-	0	Parent=Os03t0821150-00
Chr03	irgsp1_rep	three_prime_UTR	34448736	34449551	.	-	.	Parent=Os03t0821150-00
Chr03	irgsp1_rep	mRNA	34454495	34456741	.	+	.	ID=Os03t0821200-00;Name=Os03t0821200-00;Locus_id=Os03g0821200;CGSNL Gene Symbol=DOF16;CGSNL Gene Name=DNA BINDING WITH ONE FINGER 16;Oryzabase Gene Symbol Synonym(s)=OsDof16%2C Dof16%2C OsDof-16;Oryzabase Gene Name Synonym(s)=Dof zinc factor 16%2C Dof transcription factor 16;Note=Similar to Zn finger protein (Fragment).;Transcript_evidence=EU956599 (DDBJ);ORF_evidence=NP_001051725.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C Dof-type (IPR003851);Oryzabase=8806;TENOR=Os03t0821200-00;KEGG=Os03t0821200-00
Chr03	irgsp1_rep	five_prime_UTR	34454495	34454820	.	+	.	Parent=Os03t0821200-00
Chr03	irgsp1_rep	five_prime_UTR	34454960	34455063	.	+	.	Parent=Os03t0821200-00
Chr03	irgsp1_rep	CDS	34455064	34455120	.	+	0	Parent=Os03t0821200-00
Chr03	irgsp1_rep	CDS	34455415	34456602	.	+	0	Parent=Os03t0821200-00
Chr03	irgsp1_rep	three_prime_UTR	34456603	34456741	.	+	.	Parent=Os03t0821200-00
Chr03	irgsp1_rep	mRNA	34464252	34465038	.	+	.	ID=Os03t0821250-00;Name=Os03t0821250-00;Locus_id=Os03g0821250;Note=Conserved hypothetical protein.;Transcript_evidence=CT837757 (DDBJ%2C Best hit);ORF_evidence=NP_001173688.1 (RefSeq);TENOR=Os03t0821250-00;KEGG=Os03t0821250-00
Chr03	irgsp1_rep	five_prime_UTR	34464252	34464737	.	+	.	Parent=Os03t0821250-00
Chr03	irgsp1_rep	CDS	34464738	34465037	.	+	0	Parent=Os03t0821250-00
Chr03	irgsp1_rep	three_prime_UTR	34465038	34465038	.	+	.	Parent=Os03t0821250-00
Chr03	irgsp1_rep	mRNA	34471668	34471874	.	-	.	ID=Os03t0821275-00;Name=Os03t0821275-00;Locus_id=Os03g0821275;Note=Non-protein coding transcript.;Transcript_evidence=AY846819 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0821275-00
Chr03	irgsp1_rep	exon	34471668	34471874	.	-	.	Parent=Os03t0821275-00
Chr03	irgsp1_rep	mRNA	34474716	34478370	.	-	.	ID=Os03t0821300-01;Name=Os03t0821300-01;Locus_id=Os03g0821300;CGSNL Gene Symbol=XB15;CGSNL Gene Name=XA21 BINDING PROTEIN 15;Oryzabase Gene Symbol Synonym(s)=XB15%2C OsPP2C35%2C PP2C35%2C OsPP59%2C SIP35;Oryzabase Gene Name Synonym(s)=XA21 binding protein 15%2C protein phosphatase 2C35%2C protein phosphatase 2C 35%2C protein phosphatase 59%2C SKIP interacting protein 35%2C SKIPa-interacting protein 35%2C SKIPa-interacting protein 35;Note=Similar to TA11 protein (Fragment).;Transcript_evidence=AK071722 (DDBJ%2C Best hit);ORF_evidence=Q84T94 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J023109I18;Oryzabase=11144;TENOR=Os03t0821300-01
Chr03	irgsp1_rep	five_prime_UTR	34478210	34478370	.	-	.	Parent=Os03t0821300-01
Chr03	irgsp1_rep	CDS	34476785	34478209	.	-	0	Parent=Os03t0821300-01
Chr03	irgsp1_rep	CDS	34476578	34476691	.	-	0	Parent=Os03t0821300-01
Chr03	irgsp1_rep	CDS	34475244	34475508	.	-	0	Parent=Os03t0821300-01
Chr03	irgsp1_rep	CDS	34474991	34475106	.	-	2	Parent=Os03t0821300-01
Chr03	irgsp1_rep	three_prime_UTR	34474716	34474990	.	-	.	Parent=Os03t0821300-01
Chr03	irgsp1_rep	mRNA	34474697	34477056	.	-	.	ID=Os03t0821300-02;Name=Os03t0821300-02;Locus_id=Os03g0821300;CGSNL Gene Symbol=XB15;CGSNL Gene Name=XA21 BINDING PROTEIN 15;Oryzabase Gene Symbol Synonym(s)=XB15%2C OsPP2C35%2C PP2C35%2C OsPP59%2C SIP35;Oryzabase Gene Name Synonym(s)=XA21 binding protein 15%2C protein phosphatase 2C35%2C protein phosphatase 2C 35%2C protein phosphatase 59%2C SKIP interacting protein 35%2C SKIPa-interacting protein 35%2C SKIPa-interacting protein 35;Note=Similar to Protein phosphatase 2C 35.;Transcript_evidence=AK073306 (DDBJ%2C Best hit);ORF_evidence=Q84T94 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J033025G07;Oryzabase=11144;TENOR=Os03t0821300-02
Chr03	irgsp1_rep	five_prime_UTR	34477055	34477056	.	-	.	Parent=Os03t0821300-02
Chr03	irgsp1_rep	CDS	34476785	34477054	.	-	0	Parent=Os03t0821300-02
Chr03	irgsp1_rep	CDS	34476578	34476691	.	-	0	Parent=Os03t0821300-02
Chr03	irgsp1_rep	CDS	34475244	34475508	.	-	0	Parent=Os03t0821300-02
Chr03	irgsp1_rep	CDS	34474991	34475106	.	-	2	Parent=Os03t0821300-02
Chr03	irgsp1_rep	three_prime_UTR	34474697	34474990	.	-	.	Parent=Os03t0821300-02
Chr03	irgsp1_rep	mRNA	34475239	34478266	.	+	.	ID=Os03t0821325-00;Name=Os03t0821325-00;Locus_id=Os03g0821325;Note=Non-protein coding transcript.;Transcript_evidence=tplb0027a02 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os03t0821325-00
Chr03	irgsp1_rep	exon	34475239	34475489	.	+	.	Parent=Os03t0821325-00
Chr03	irgsp1_rep	exon	34476557	34476693	.	+	.	Parent=Os03t0821325-00
Chr03	irgsp1_rep	exon	34476753	34477740	.	+	.	Parent=Os03t0821325-00
Chr03	irgsp1_rep	exon	34477821	34477988	.	+	.	Parent=Os03t0821325-00
Chr03	irgsp1_rep	exon	34478055	34478266	.	+	.	Parent=Os03t0821325-00
Chr03	irgsp1_rep	mRNA	34487274	34488113	.	-	.	ID=Os03t0821350-01;Name=Os03t0821350-01;Locus_id=Os03g0821350;Note=Conserved hypothetical protein.;Transcript_evidence=AK069793 (DDBJ%2C Best hit);ORF_evidence=B8AMB6 (UniProt);NIAS_FLcDNA=J023033A06;Expression=AK069793;TENOR=Os03t0821350-01;KEGG=Os03t0821350-01
Chr03	irgsp1_rep	five_prime_UTR	34488084	34488113	.	-	.	Parent=Os03t0821350-01
Chr03	irgsp1_rep	CDS	34487664	34488083	.	-	0	Parent=Os03t0821350-01
Chr03	irgsp1_rep	three_prime_UTR	34487274	34487663	.	-	.	Parent=Os03t0821350-01
Chr03	irgsp1_rep	mRNA	34493235	34493621	.	+	.	ID=Os03t0821550-00;Name=Os03t0821550-00;Locus_id=Os03g0821550;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q84TB1 (UniProt);TENOR=Os03t0821550-00
Chr03	irgsp1_rep	CDS	34493235	34493621	.	+	0	Parent=Os03t0821550-00
Chr03	irgsp1_rep	mRNA	34493749	34496857	.	-	.	ID=Os03t0821700-01;Name=Os03t0821700-01;Locus_id=Os03g0821700;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK102999 (DDBJ%2C Best hit);ORF_evidence=A2XNG7 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J033116F23;Expression=AK102999;TENOR=Os03t0821700-01;KEGG=Os03t0821700-01
Chr03	irgsp1_rep	five_prime_UTR	34496846	34496857	.	-	.	Parent=Os03t0821700-01
Chr03	irgsp1_rep	CDS	34495037	34496845	.	-	0	Parent=Os03t0821700-01
Chr03	irgsp1_rep	three_prime_UTR	34494872	34495036	.	-	.	Parent=Os03t0821700-01
Chr03	irgsp1_rep	three_prime_UTR	34493749	34494245	.	-	.	Parent=Os03t0821700-01
Chr03	irgsp1_rep	mRNA	34498278	34501291	.	-	.	ID=Os03t0821800-01;Name=Os03t0821800-01;Locus_id=Os03g0821800;Note=Glycosyl transferase%2C family 2 domain containing protein.;Transcript_evidence=AK102290 (DDBJ%2C Best hit);ORF_evidence=XP_002881666.1 (RefSeq);InterPro=Glycosyl transferase%2C family 2 (IPR001173);NIAS_FLcDNA=J033089K11;Oryzabase=15251;Expression=AK102290;TENOR=Os03t0821800-01;KEGG=Os03t0821800-01 (EC:2.4.1.117)
Chr03	irgsp1_rep	five_prime_UTR	34501180	34501291	.	-	.	Parent=Os03t0821800-01
Chr03	irgsp1_rep	CDS	34501093	34501179	.	-	0	Parent=Os03t0821800-01
Chr03	irgsp1_rep	CDS	34500938	34501008	.	-	0	Parent=Os03t0821800-01
Chr03	irgsp1_rep	CDS	34500769	34500826	.	-	1	Parent=Os03t0821800-01
Chr03	irgsp1_rep	CDS	34500533	34500639	.	-	0	Parent=Os03t0821800-01
Chr03	irgsp1_rep	CDS	34500353	34500398	.	-	1	Parent=Os03t0821800-01
Chr03	irgsp1_rep	CDS	34499530	34499664	.	-	0	Parent=Os03t0821800-01
Chr03	irgsp1_rep	CDS	34499301	34499390	.	-	0	Parent=Os03t0821800-01
Chr03	irgsp1_rep	CDS	34499075	34499203	.	-	0	Parent=Os03t0821800-01
Chr03	irgsp1_rep	CDS	34498886	34498969	.	-	0	Parent=Os03t0821800-01
Chr03	irgsp1_rep	CDS	34498721	34498785	.	-	0	Parent=Os03t0821800-01
Chr03	irgsp1_rep	CDS	34498455	34498641	.	-	1	Parent=Os03t0821800-01
Chr03	irgsp1_rep	three_prime_UTR	34498278	34498454	.	-	.	Parent=Os03t0821800-01
Chr03	irgsp1_rep	mRNA	34502981	34507740	.	+	.	ID=Os03t0821900-01;Name=Os03t0821900-01;Locus_id=Os03g0821900;RAP-DB Gene Symbol Synonym(s)=OsRLCK118;RAP-DB Gene Name Synonym(s)=Receptor-Like Cytoplasmic Kinase 118;CGSNL Gene Symbol=RLCK118;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 118;Oryzabase Gene Symbol Synonym(s)=OsRLCK118;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 118;Note=Receptor-like cytoplasmic kinase%2C Positive regulation of chitin- and PGN induced immunity%2C Positive regulation of seed set rate;Transcript_evidence=AK070847;ORF_evidence=Q10BD9;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),Protein kinase domain (IPR000719),Serine-threonine/tyrosine-protein kinase%2C catalytic domain (IPR001245),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J023064M04;Manual Curation=July 20%2C 2020;Literature_PMID=28220451,26679011;Oryzabase=18824;Expression=AK070847;TENOR=Os03t0821900-01;KEGG=Os03t0821900-01;Subcellular location=plasma membrane (GO:0005886)
Chr03	irgsp1_rep	five_prime_UTR	34502981	34503317	.	+	.	Parent=Os03t0821900-01
Chr03	irgsp1_rep	CDS	34503318	34503381	.	+	0	Parent=Os03t0821900-01
Chr03	irgsp1_rep	CDS	34505326	34505651	.	+	2	Parent=Os03t0821900-01
Chr03	irgsp1_rep	CDS	34505815	34505950	.	+	0	Parent=Os03t0821900-01
Chr03	irgsp1_rep	CDS	34506065	34506207	.	+	2	Parent=Os03t0821900-01
Chr03	irgsp1_rep	CDS	34506294	34506417	.	+	0	Parent=Os03t0821900-01
Chr03	irgsp1_rep	CDS	34506976	34507457	.	+	2	Parent=Os03t0821900-01
Chr03	irgsp1_rep	three_prime_UTR	34507458	34507740	.	+	.	Parent=Os03t0821900-01
Chr03	irgsp1_rep	mRNA	34505325	34507740	.	+	.	ID=Os03t0821900-02;Name=Os03t0821900-02;Locus_id=Os03g0821900;CGSNL Gene Symbol=RLCK118;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 118;Oryzabase Gene Symbol Synonym(s)=OsRLCK118;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 118;Note=Similar to Protein kinase APK1B.;Transcript_evidence=AK104902 (DDBJ%2C Best hit);ORF_evidence=B6T4T3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-046-D05;Oryzabase=18824;TENOR=Os03t0821900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	34505325	34505327	.	+	.	Parent=Os03t0821900-02
Chr03	irgsp1_rep	CDS	34505328	34505651	.	+	0	Parent=Os03t0821900-02
Chr03	irgsp1_rep	CDS	34505815	34505950	.	+	0	Parent=Os03t0821900-02
Chr03	irgsp1_rep	CDS	34506065	34506207	.	+	2	Parent=Os03t0821900-02
Chr03	irgsp1_rep	CDS	34506294	34506417	.	+	0	Parent=Os03t0821900-02
Chr03	irgsp1_rep	CDS	34506976	34507457	.	+	2	Parent=Os03t0821900-02
Chr03	irgsp1_rep	three_prime_UTR	34507458	34507740	.	+	.	Parent=Os03t0821900-02
Chr03	irgsp1_rep	mRNA	34506962	34507538	.	-	.	ID=Os03t0821950-00;Name=Os03t0821950-00;Locus_id=Os03g0821950;Note=Hypothetical protein.;Transcript_evidence=AK365805 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0821950-00
Chr03	irgsp1_rep	five_prime_UTR	34507455	34507538	.	-	.	Parent=Os03t0821950-00
Chr03	irgsp1_rep	CDS	34507149	34507454	.	-	0	Parent=Os03t0821950-00
Chr03	irgsp1_rep	three_prime_UTR	34506962	34507148	.	-	.	Parent=Os03t0821950-00
Chr03	irgsp1_rep	mRNA	34508596	34511279	.	-	.	ID=Os03t0822000-01;Name=Os03t0822000-01;Locus_id=Os03g0822000;RAP-DB Gene Symbol Synonym(s)=OsEXPA7;RAP-DB Gene Name Synonym(s)=Expansin7;CGSNL Gene Symbol=EXPA7;CGSNL Gene Name=ALPHA-EXPANSIN 7;Oryzabase Gene Symbol Synonym(s)=OsEXPA7%2C EXP7%2C OsEXP7%2C OsaEXPa1.26;Oryzabase Gene Name Synonym(s)=Expansin-A7%2C Alpha-expansin-7;Note=Expansin7%2C Salt stress tolerance;Transcript_evidence=AK101784;ORF_evidence=Q852A1;GO=Biological Process: plant-type cell wall organization (GO:0009664),Cellular Component: extracellular region (GO:0005576);InterPro=RlpA-like domain superfamily (IPR036908),Expansin%2C cellulose-binding-like domain superfamily (IPR036749),Expansin/Lol pI (IPR007118),Expansin (IPR002963),RlpA-like protein%2C double-psi beta-barrel domain (IPR009009),Expansin/pollen allergen%2C DPBB domain (IPR007112),Expansin%2C cellulose-binding-like domain (IPR007117);NIAS_FLcDNA=J033065B20;Manual Curation=January 17%2C 2020;Literature_PMID=31936829;Oryzabase=7342;Expression=AK101784;TENOR=Os03t0822000-01;KEGG=Os03t0822000-01
Chr03	irgsp1_rep	five_prime_UTR	34511059	34511279	.	-	.	Parent=Os03t0822000-01
Chr03	irgsp1_rep	CDS	34510574	34511058	.	-	0	Parent=Os03t0822000-01
Chr03	irgsp1_rep	CDS	34508898	34509207	.	-	1	Parent=Os03t0822000-01
Chr03	irgsp1_rep	three_prime_UTR	34508596	34508897	.	-	.	Parent=Os03t0822000-01
Chr03	irgsp1_rep	mRNA	34508372	34511103	.	-	.	ID=Os03t0822000-02;Name=Os03t0822000-02;Locus_id=Os03g0822000;CGSNL Gene Symbol=EXPA7;CGSNL Gene Name=ALPHA-EXPANSIN 7;Oryzabase Gene Symbol Synonym(s)=OsEXPA7%2C EXP7%2C OsEXP7%2C OsaEXPa1.26;Oryzabase Gene Name Synonym(s)=Expansin-A7%2C Alpha-expansin-7;Note=Alpha-expansin OsEXPA7.;Transcript_evidence=AK119215 (DDBJ%2C Best hit);ORF_evidence=Q852A1 (UniProt);GO=Biological Process: plant-type cell wall organization (GO:0009664),Cellular Component: extracellular region (GO:0005576);InterPro=Expansin (IPR002963),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);NIAS_FLcDNA=001-041-G10;Oryzabase=7342;Expression=AK119215;TENOR=Os03t0822000-02;KEGG=Os03t0822000-02
Chr03	irgsp1_rep	five_prime_UTR	34511059	34511103	.	-	.	Parent=Os03t0822000-02
Chr03	irgsp1_rep	CDS	34510574	34511058	.	-	0	Parent=Os03t0822000-02
Chr03	irgsp1_rep	CDS	34508898	34509207	.	-	1	Parent=Os03t0822000-02
Chr03	irgsp1_rep	three_prime_UTR	34508372	34508897	.	-	.	Parent=Os03t0822000-02
Chr03	irgsp1_rep	mRNA	34507597	34509249	.	-	.	ID=Os03t0822000-03;Name=Os03t0822000-03;Locus_id=Os03g0822000;CGSNL Gene Symbol=EXPA7;CGSNL Gene Name=ALPHA-EXPANSIN 7;Oryzabase Gene Symbol Synonym(s)=OsEXPA7%2C EXP7%2C OsEXP7%2C OsaEXPa1.26;Oryzabase Gene Name Synonym(s)=Expansin-A7%2C Alpha-expansin-7;Note=Similar to Expansin-A7.;Transcript_evidence=AK063455 (DDBJ%2C Best hit);ORF_evidence=Q852A1 (UniProt);GO=Biological Process: plant-type cell wall organization (GO:0009664),Cellular Component: extracellular region (GO:0005576);InterPro=Expansin (IPR002963),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118);NIAS_FLcDNA=001-115-G06;Oryzabase=7342;Expression=AK063455;TENOR=Os03t0822000-03;KEGG=Os03t0822000-03
Chr03	irgsp1_rep	five_prime_UTR	34509246	34509249	.	-	.	Parent=Os03t0822000-03
Chr03	irgsp1_rep	CDS	34508898	34509245	.	-	0	Parent=Os03t0822000-03
Chr03	irgsp1_rep	three_prime_UTR	34507597	34508897	.	-	.	Parent=Os03t0822000-03
Chr03	irgsp1_rep	mRNA	34508917	34510858	.	+	.	ID=Os03t0822033-00;Name=Os03t0822033-00;Locus_id=Os03g0822033;Note=Hypothetical gene.;Transcript_evidence=BT016845 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0822033-00
Chr03	irgsp1_rep	five_prime_UTR	34508917	34508918	.	+	.	Parent=Os03t0822033-00
Chr03	irgsp1_rep	CDS	34508919	34509209	.	+	0	Parent=Os03t0822033-00
Chr03	irgsp1_rep	CDS	34510576	34510858	.	+	0	Parent=Os03t0822033-00
Chr03	irgsp1_rep	mRNA	34521748	34525937	.	+	.	ID=Os03t0822100-01;Name=Os03t0822100-01;Locus_id=Os03g0822100;Note=Similar to Transposase (Fragment).;Transcript_evidence=AK101094 (DDBJ%2C Best hit);ORF_evidence=NP_001060325.2 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677);InterPro=Zinc finger%2C BED-type predicted (IPR003656),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J033024N05;Expression=AK101094;TENOR=Os03t0822100-01;KEGG=Os03t0822100-01
Chr03	irgsp1_rep	five_prime_UTR	34521748	34521968	.	+	.	Parent=Os03t0822100-01
Chr03	irgsp1_rep	CDS	34521969	34522030	.	+	0	Parent=Os03t0822100-01
Chr03	irgsp1_rep	CDS	34522133	34522306	.	+	1	Parent=Os03t0822100-01
Chr03	irgsp1_rep	CDS	34522760	34524443	.	+	1	Parent=Os03t0822100-01
Chr03	irgsp1_rep	three_prime_UTR	34524444	34524726	.	+	.	Parent=Os03t0822100-01
Chr03	irgsp1_rep	three_prime_UTR	34524807	34524862	.	+	.	Parent=Os03t0822100-01
Chr03	irgsp1_rep	three_prime_UTR	34525100	34525180	.	+	.	Parent=Os03t0822100-01
Chr03	irgsp1_rep	three_prime_UTR	34525716	34525937	.	+	.	Parent=Os03t0822100-01
Chr03	irgsp1_rep	mRNA	34523935	34525973	.	+	.	ID=Os03t0822100-02;Name=Os03t0822100-02;Locus_id=Os03g0822100;Note=Similar to cDNA clone:J033024N05%2C full insert sequence.;Transcript_evidence=AK059713 (DDBJ%2C Best hit);ORF_evidence=NP_001060325.2 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Ribonuclease H-like (IPR012337);NIAS_FLcDNA=001-032-F08;Expression=AK059713;TENOR=Os03t0822100-02;KEGG=Os03t0822100-02
Chr03	irgsp1_rep	five_prime_UTR	34523935	34523936	.	+	.	Parent=Os03t0822100-02
Chr03	irgsp1_rep	CDS	34523937	34524443	.	+	0	Parent=Os03t0822100-02
Chr03	irgsp1_rep	three_prime_UTR	34524444	34524726	.	+	.	Parent=Os03t0822100-02
Chr03	irgsp1_rep	three_prime_UTR	34524807	34524862	.	+	.	Parent=Os03t0822100-02
Chr03	irgsp1_rep	three_prime_UTR	34525100	34525180	.	+	.	Parent=Os03t0822100-02
Chr03	irgsp1_rep	three_prime_UTR	34525716	34525973	.	+	.	Parent=Os03t0822100-02
Chr03	irgsp1_rep	mRNA	34526502	34529096	.	-	.	ID=Os03t0822200-01;Name=Os03t0822200-01;Locus_id=Os03g0822200;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK069405 (DDBJ%2C Best hit),AK104151 (DDBJ%2C Best hit),AK104209 (DDBJ%2C Best hit);ORF_evidence=NP_001148959.1 (RefSeq);GO=Biological Process: steroid biosynthetic process (GO:0006694),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: 3-beta-hydroxy-delta5-steroid dehydrogenase activity (GO:0003854),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616);InterPro=3-beta hydroxysteroid dehydrogenase/isomerase (IPR002225),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023017D04,006-208-E08,006-305-C03;TENOR=Os03t0822200-01
Chr03	irgsp1_rep	five_prime_UTR	34528982	34529096	.	-	.	Parent=Os03t0822200-01
Chr03	irgsp1_rep	CDS	34528921	34528981	.	-	0	Parent=Os03t0822200-01
Chr03	irgsp1_rep	CDS	34528016	34528287	.	-	2	Parent=Os03t0822200-01
Chr03	irgsp1_rep	CDS	34527892	34527928	.	-	0	Parent=Os03t0822200-01
Chr03	irgsp1_rep	CDS	34527712	34527809	.	-	2	Parent=Os03t0822200-01
Chr03	irgsp1_rep	CDS	34527339	34527400	.	-	0	Parent=Os03t0822200-01
Chr03	irgsp1_rep	CDS	34527006	34527129	.	-	1	Parent=Os03t0822200-01
Chr03	irgsp1_rep	CDS	34526700	34526819	.	-	0	Parent=Os03t0822200-01
Chr03	irgsp1_rep	three_prime_UTR	34526502	34526699	.	-	.	Parent=Os03t0822200-01
Chr03	irgsp1_rep	mRNA	34529205	34531401	.	+	.	ID=Os03t0822300-01;Name=Os03t0822300-01;Locus_id=Os03g0822300;Note=Ribosomal RNA methyltransferase J domain containing protein.;Transcript_evidence=AK060050 (DDBJ%2C Best hit);ORF_evidence=NP_196887.1 (RefSeq);GO=Biological Process: RNA methylation (GO:0001510),Biological Process: methylation (GO:0032259),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Ribosomal RNA methyltransferase RrmJ/FtsJ (IPR002877),Ribosomal RNA large subunit methyltransferase E (IPR015507);NIAS_FLcDNA=006-305-A03;Expression=AK060050;TENOR=Os03t0822300-01;KEGG=Os03t0822300-01 (EC:2.1.1.-)
Chr03	irgsp1_rep	five_prime_UTR	34529205	34529280	.	+	.	Parent=Os03t0822300-01
Chr03	irgsp1_rep	CDS	34529281	34529361	.	+	0	Parent=Os03t0822300-01
Chr03	irgsp1_rep	CDS	34529452	34529538	.	+	0	Parent=Os03t0822300-01
Chr03	irgsp1_rep	CDS	34529608	34529670	.	+	0	Parent=Os03t0822300-01
Chr03	irgsp1_rep	CDS	34529762	34529863	.	+	0	Parent=Os03t0822300-01
Chr03	irgsp1_rep	CDS	34530760	34531018	.	+	0	Parent=Os03t0822300-01
Chr03	irgsp1_rep	CDS	34531124	34531233	.	+	2	Parent=Os03t0822300-01
Chr03	irgsp1_rep	three_prime_UTR	34531234	34531401	.	+	.	Parent=Os03t0822300-01
Chr03	irgsp1_rep	mRNA	34533182	34533828	.	+	.	ID=Os03t0822400-01;Name=Os03t0822400-01;Locus_id=Os03g0822400;Note=Conserved hypothetical protein.;Transcript_evidence=AK102425 (DDBJ%2C Best hit),AK070075 (DDBJ%2C Best hit);ORF_evidence=A2XNH3 (UniProt);NIAS_FLcDNA=J033093F08,J023044P22;Expression=AK102425;TENOR=Os03t0822400-01;KEGG=Os03t0822400-01
Chr03	irgsp1_rep	five_prime_UTR	34533182	34533238	.	+	.	Parent=Os03t0822400-01
Chr03	irgsp1_rep	CDS	34533239	34533508	.	+	0	Parent=Os03t0822400-01
Chr03	irgsp1_rep	three_prime_UTR	34533509	34533828	.	+	.	Parent=Os03t0822400-01
Chr03	irgsp1_rep	mRNA	34536280	34539296	.	+	.	ID=Os03t0822700-01;Name=Os03t0822700-01;Locus_id=Os03g0822700;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK101448 (DDBJ%2C Best hit);ORF_evidence=B6TK50 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),Armadillo-like helical (IPR011989),Nucleotide exchange factor Fes1 (IPR013918),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033039M12;Expression=AK101448;TENOR=Os03t0822700-01;KEGG=Os03t0822700-01
Chr03	irgsp1_rep	five_prime_UTR	34536280	34536495	.	+	.	Parent=Os03t0822700-01
Chr03	irgsp1_rep	CDS	34536496	34536587	.	+	0	Parent=Os03t0822700-01
Chr03	irgsp1_rep	CDS	34537014	34537156	.	+	1	Parent=Os03t0822700-01
Chr03	irgsp1_rep	CDS	34537679	34537729	.	+	2	Parent=Os03t0822700-01
Chr03	irgsp1_rep	CDS	34537819	34538040	.	+	2	Parent=Os03t0822700-01
Chr03	irgsp1_rep	CDS	34538145	34538247	.	+	2	Parent=Os03t0822700-01
Chr03	irgsp1_rep	CDS	34538570	34539098	.	+	1	Parent=Os03t0822700-01
Chr03	irgsp1_rep	three_prime_UTR	34539099	34539296	.	+	.	Parent=Os03t0822700-01
Chr03	irgsp1_rep	mRNA	34536285	34539292	.	+	.	ID=Os03t0822700-02;Name=Os03t0822700-02;Locus_id=Os03g0822700;Note=Similar to Armadillo/beta-catenin-like repeat family protein.;Transcript_evidence=AK061682 (DDBJ%2C Best hit);ORF_evidence=B6U627 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Nucleotide exchange factor Fes1 (IPR013918),Armadillo-type fold (IPR016024);NIAS_FLcDNA=001-037-A06;Expression=AK061682;TENOR=Os03t0822700-02;KEGG=Os03t0822700-02
Chr03	irgsp1_rep	five_prime_UTR	34536285	34536495	.	+	.	Parent=Os03t0822700-02
Chr03	irgsp1_rep	CDS	34536496	34536587	.	+	0	Parent=Os03t0822700-02
Chr03	irgsp1_rep	CDS	34537014	34537156	.	+	1	Parent=Os03t0822700-02
Chr03	irgsp1_rep	CDS	34537679	34537729	.	+	2	Parent=Os03t0822700-02
Chr03	irgsp1_rep	CDS	34538145	34538247	.	+	2	Parent=Os03t0822700-02
Chr03	irgsp1_rep	CDS	34538570	34539098	.	+	1	Parent=Os03t0822700-02
Chr03	irgsp1_rep	three_prime_UTR	34539099	34539292	.	+	.	Parent=Os03t0822700-02
Chr03	irgsp1_rep	mRNA	34539517	34540987	.	+	.	ID=Os03t0822800-01;Name=Os03t0822800-01;Locus_id=Os03g0822800;Oryzabase Gene Symbol Synonym(s)=OsDjC36;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C36%2C rice DJC73 homolog;Note=Similar to Chaperone protein dnaJ 1.;Transcript_evidence=AK099592 (DDBJ%2C Best hit);ORF_evidence=Q10BC9 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095);NIAS_FLcDNA=J013043N03;Oryzabase=12193;Expression=AK099592;TENOR=Os03t0822800-01;KEGG=Os03t0822800-01
Chr03	irgsp1_rep	five_prime_UTR	34539517	34539566	.	+	.	Parent=Os03t0822800-01
Chr03	irgsp1_rep	CDS	34539567	34539896	.	+	0	Parent=Os03t0822800-01
Chr03	irgsp1_rep	CDS	34539978	34540178	.	+	0	Parent=Os03t0822800-01
Chr03	irgsp1_rep	three_prime_UTR	34540179	34540503	.	+	.	Parent=Os03t0822800-01
Chr03	irgsp1_rep	three_prime_UTR	34540660	34540987	.	+	.	Parent=Os03t0822800-01
Chr03	irgsp1_rep	mRNA	34539897	34541316	.	+	.	ID=Os03t0822800-02;Name=Os03t0822800-02;Locus_id=Os03g0822800;Oryzabase Gene Symbol Synonym(s)=OsDjC36;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C36%2C rice DJC73 homolog;Note=Similar to heat shock protein DnaJ%2C N-terminal.;Transcript_evidence=AK069263 (DDBJ%2C Best hit);ORF_evidence=NP_001149532.1 (RefSeq);GO=Molecular Function: heat shock protein binding (GO:0031072);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623);NIAS_FLcDNA=J023010B22;Oryzabase=12193;Expression=AK069263;TENOR=Os03t0822800-02;KEGG=Os03t0822800-02
Chr03	irgsp1_rep	five_prime_UTR	34539897	34539977	.	+	.	Parent=Os03t0822800-02
Chr03	irgsp1_rep	CDS	34539978	34540149	.	+	0	Parent=Os03t0822800-02
Chr03	irgsp1_rep	CDS	34540409	34540503	.	+	2	Parent=Os03t0822800-02
Chr03	irgsp1_rep	CDS	34540660	34540869	.	+	0	Parent=Os03t0822800-02
Chr03	irgsp1_rep	three_prime_UTR	34540870	34541316	.	+	.	Parent=Os03t0822800-02
Chr03	irgsp1_rep	mRNA	34541557	34545309	.	+	.	ID=Os03t0822900-01;Name=Os03t0822900-01;Locus_id=Os03g0822900;Note=Protein of unknown function DUF659 domain containing protein.;Transcript_evidence=AK099787 (DDBJ%2C Best hit);ORF_evidence=A2XNH6 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Zinc finger%2C BED-type predicted (IPR003656),Domain of unknown function DUF659 (IPR007021),HAT dimerisation (IPR008906),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J013096O21;Expression=AK099787;TENOR=Os03t0822900-01;KEGG=Os03t0822900-01
Chr03	irgsp1_rep	five_prime_UTR	34541557	34541674	.	+	.	Parent=Os03t0822900-01
Chr03	irgsp1_rep	five_prime_UTR	34542091	34542115	.	+	.	Parent=Os03t0822900-01
Chr03	irgsp1_rep	CDS	34542116	34544045	.	+	0	Parent=Os03t0822900-01
Chr03	irgsp1_rep	CDS	34544272	34544476	.	+	2	Parent=Os03t0822900-01
Chr03	irgsp1_rep	CDS	34544566	34544762	.	+	1	Parent=Os03t0822900-01
Chr03	irgsp1_rep	CDS	34544848	34544906	.	+	2	Parent=Os03t0822900-01
Chr03	irgsp1_rep	three_prime_UTR	34544907	34545309	.	+	.	Parent=Os03t0822900-01
Chr03	irgsp1_rep	mRNA	34545492	34547856	.	-	.	ID=Os03t0823000-01;Name=Os03t0823000-01;Locus_id=Os03g0823000;CGSNL Gene Symbol=ZFP182;CGSNL Gene Name=ZINC FINGER PROTEIN 182;Oryzabase Gene Symbol Synonym(s)=ZFP182/ZOS3-21%2C ZOS3-21;Note=Resistance protein candidate (Fragment).;Transcript_evidence=AK240648 (DDBJ%2C Best hit);ORF_evidence=NP_001147835.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023030M24_2;Oryzabase=7130;TENOR=Os03t0823000-01;KEGG=Os03t0823000-01
Chr03	irgsp1_rep	five_prime_UTR	34547830	34547856	.	-	.	Parent=Os03t0823000-01
Chr03	irgsp1_rep	CDS	34545724	34547829	.	-	0	Parent=Os03t0823000-01
Chr03	irgsp1_rep	three_prime_UTR	34545492	34545723	.	-	.	Parent=Os03t0823000-01
Chr03	irgsp1_rep	mRNA	34554649	34556794	.	-	.	ID=Os03t0823100-01;Name=Os03t0823100-01;Locus_id=Os03g0823100;Note=Major facilitator superfamily protein.;Transcript_evidence=AK103844 (DDBJ%2C Best hit);ORF_evidence=NP_200733.2 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J033148J17;TENOR=Os03t0823100-01;KEGG=Os03t0823100-01
Chr03	irgsp1_rep	CDS	34556447	34556794	.	-	0	Parent=Os03t0823100-01
Chr03	irgsp1_rep	CDS	34556131	34556178	.	-	0	Parent=Os03t0823100-01
Chr03	irgsp1_rep	CDS	34555962	34556024	.	-	0	Parent=Os03t0823100-01
Chr03	irgsp1_rep	CDS	34555734	34555814	.	-	0	Parent=Os03t0823100-01
Chr03	irgsp1_rep	CDS	34555433	34555531	.	-	0	Parent=Os03t0823100-01
Chr03	irgsp1_rep	CDS	34555222	34555359	.	-	0	Parent=Os03t0823100-01
Chr03	irgsp1_rep	CDS	34554855	34554989	.	-	0	Parent=Os03t0823100-01
Chr03	irgsp1_rep	three_prime_UTR	34554649	34554854	.	-	.	Parent=Os03t0823100-01
Chr03	irgsp1_rep	mRNA	34556968	34559878	.	-	.	ID=Os03t0823200-01;Name=Os03t0823200-01;Locus_id=Os03g0823200;Note=Similar to predicted protein.;Transcript_evidence=AK072964 (DDBJ%2C Best hit);ORF_evidence=NP_200733.2 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transmembrane transporter activity (GO:0022857);InterPro=General substrate transporter (IPR005828),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J023150H09;Expression=AK072964;TENOR=Os03t0823200-01;KEGG=Os03t0823200-01
Chr03	irgsp1_rep	five_prime_UTR	34559289	34559878	.	-	.	Parent=Os03t0823200-01
Chr03	irgsp1_rep	CDS	34559211	34559288	.	-	0	Parent=Os03t0823200-01
Chr03	irgsp1_rep	CDS	34559049	34559115	.	-	0	Parent=Os03t0823200-01
Chr03	irgsp1_rep	CDS	34558770	34558951	.	-	2	Parent=Os03t0823200-01
Chr03	irgsp1_rep	three_prime_UTR	34556968	34558769	.	-	.	Parent=Os03t0823200-01
Chr03	irgsp1_rep	mRNA	34560598	34560851	.	-	.	ID=Os03t0823301-00;Name=Os03t0823301-00;Locus_id=Os03g0823301;Note=Hypothetical conserved gene.;Transcript_evidence=EU942158 (DDBJ);ORF_evidence=B6TW49 (UniProt);TENOR=Os03t0823301-00;KEGG=Os03t0823301-00
Chr03	irgsp1_rep	five_prime_UTR	34560802	34560851	.	-	.	Parent=Os03t0823301-00
Chr03	irgsp1_rep	CDS	34560598	34560801	.	-	0	Parent=Os03t0823301-00
Chr03	irgsp1_rep	mRNA	34562310	34562479	.	-	.	ID=Os03t0823350-00;Name=Os03t0823350-00;Locus_id=Os03g0823350;Note=Conserved hypothetical protein.;Transcript_evidence=EU943107 (DDBJ);ORF_evidence=B6TW49 (UniProt);TENOR=Os03t0823350-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	34562397	34562479	.	-	.	Parent=Os03t0823350-00
Chr03	irgsp1_rep	CDS	34562310	34562396	.	-	0	Parent=Os03t0823350-00
Chr03	irgsp1_rep	mRNA	34567109	34568087	.	-	.	ID=Os03t0823400-01;Name=Os03t0823400-01;Locus_id=Os03g0823400;Note=Similar to Bowman-Birk type trypsin inhibitor (WTI).;Transcript_evidence=AK120562 (DDBJ%2C Best hit);ORF_evidence=A1EGX1 (UniProt);GO=Cellular Component: extracellular region (GO:0005576),Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Proteinase inhibitor I12%2C Bowman-Birk (IPR000877);NIAS_FLcDNA=J013132J02;Expression=AK120562;TENOR=Os03t0823400-01;KEGG=Os03t0823400-01
Chr03	irgsp1_rep	five_prime_UTR	34567943	34568087	.	-	.	Parent=Os03t0823400-01
Chr03	irgsp1_rep	CDS	34567819	34567942	.	-	0	Parent=Os03t0823400-01
Chr03	irgsp1_rep	CDS	34567454	34567713	.	-	2	Parent=Os03t0823400-01
Chr03	irgsp1_rep	three_prime_UTR	34567109	34567453	.	-	.	Parent=Os03t0823400-01
Chr03	irgsp1_rep	mRNA	34574335	34576973	.	-	.	ID=Os03t0823500-02;Name=Os03t0823500-02;Locus_id=Os03g0823500;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=TGF-beta receptor%2C type I/II extracellular region family protein.;Transcript_evidence=AK058972 (DDBJ%2C Best hit),AK099193 (DDBJ%2C Best hit);ORF_evidence=NP_181326.1 (RefSeq);NIAS_FLcDNA=001-020-D02,J023109G05;Oryzabase=23650;Expression=AK058972;TENOR=Os03t0823500-02;KEGG=Os03t0823500-02
Chr03	irgsp1_rep	five_prime_UTR	34576821	34576973	.	-	.	Parent=Os03t0823500-02
Chr03	irgsp1_rep	CDS	34576673	34576820	.	-	0	Parent=Os03t0823500-02
Chr03	irgsp1_rep	CDS	34576322	34576539	.	-	2	Parent=Os03t0823500-02
Chr03	irgsp1_rep	CDS	34575709	34576232	.	-	0	Parent=Os03t0823500-02
Chr03	irgsp1_rep	CDS	34574553	34575420	.	-	1	Parent=Os03t0823500-02
Chr03	irgsp1_rep	three_prime_UTR	34574335	34574552	.	-	.	Parent=Os03t0823500-02
Chr03	irgsp1_rep	mRNA	34574605	34576534	.	+	.	ID=Os03t0823550-00;Name=Os03t0823550-00;Locus_id=Os03g0823550;Note=Hypothetical protein.;Transcript_evidence=tplb0038k08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0823550-00
Chr03	irgsp1_rep	five_prime_UTR	34574605	34574931	.	+	.	Parent=Os03t0823550-00
Chr03	irgsp1_rep	CDS	34574932	34575478	.	+	0	Parent=Os03t0823550-00
Chr03	irgsp1_rep	CDS	34575769	34576186	.	+	2	Parent=Os03t0823550-00
Chr03	irgsp1_rep	CDS	34576270	34576504	.	+	1	Parent=Os03t0823550-00
Chr03	irgsp1_rep	three_prime_UTR	34576505	34576534	.	+	.	Parent=Os03t0823550-00
Chr03	irgsp1_rep	mRNA	34593134	34596487	.	-	.	ID=Os03t0823700-01;Name=Os03t0823700-01;Locus_id=Os03g0823700;Oryzabase Gene Symbol Synonym(s)=OsRab11B2;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab11B2;Note=Similar to Ras-related protein Rab11C.;Transcript_evidence=AK061336 (DDBJ%2C Best hit);ORF_evidence=B4F7V4 (UniProt);GO=Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225);NIAS_FLcDNA=006-303-B12;Oryzabase=11098;Expression=AK061336;TENOR=Os03t0823700-01;KEGG=Os03t0823700-01
Chr03	irgsp1_rep	five_prime_UTR	34596387	34596487	.	-	.	Parent=Os03t0823700-01
Chr03	irgsp1_rep	five_prime_UTR	34596201	34596233	.	-	.	Parent=Os03t0823700-01
Chr03	irgsp1_rep	CDS	34596036	34596200	.	-	0	Parent=Os03t0823700-01
Chr03	irgsp1_rep	CDS	34593569	34594051	.	-	0	Parent=Os03t0823700-01
Chr03	irgsp1_rep	three_prime_UTR	34593134	34593568	.	-	.	Parent=Os03t0823700-01
Chr03	irgsp1_rep	mRNA	34593328	34596487	.	-	.	ID=Os03t0823700-02;Name=Os03t0823700-02;Locus_id=Os03g0823700;Oryzabase Gene Symbol Synonym(s)=OsRab11B2;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab11B2;Note=Similar to Ras-related protein Rab11C.;Transcript_evidence=AK067508 (DDBJ%2C Best hit);ORF_evidence=B4F7V4 (UniProt);GO=Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Small GTPase superfamily%2C Rab type (IPR003579);NIAS_FLcDNA=J013110L21;Oryzabase=11098;Expression=AK067508;TENOR=Os03t0823700-02;KEGG=Os03t0823700-02
Chr03	irgsp1_rep	five_prime_UTR	34596387	34596487	.	-	.	Parent=Os03t0823700-02
Chr03	irgsp1_rep	five_prime_UTR	34596201	34596233	.	-	.	Parent=Os03t0823700-02
Chr03	irgsp1_rep	CDS	34595928	34596200	.	-	0	Parent=Os03t0823700-02
Chr03	irgsp1_rep	three_prime_UTR	34593328	34595927	.	-	.	Parent=Os03t0823700-02
Chr03	irgsp1_rep	mRNA	34593570	34596200	.	+	.	ID=Os03t0823750-00;Name=Os03t0823750-00;Locus_id=Os03g0823750;Note=Non-protein coding transcript.;Transcript_evidence=BT084300 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0823750-00
Chr03	irgsp1_rep	exon	34593570	34594053	.	+	.	Parent=Os03t0823750-00
Chr03	irgsp1_rep	exon	34596042	34596200	.	+	.	Parent=Os03t0823750-00
Chr03	irgsp1_rep	mRNA	34597467	34601207	.	-	.	ID=Os03t0823800-01;Name=Os03t0823800-01;Locus_id=Os03g0823800;Note=Similar to Permease 1.;Transcript_evidence=AK071234 (DDBJ%2C Best hit);ORF_evidence=NP_001150400.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Xanthine/uracil/vitamin C permease (IPR006043);NIAS_FLcDNA=J023086K11;Expression=AK071234;TENOR=Os03t0823800-01;KEGG=Os03t0823800-01
Chr03	irgsp1_rep	five_prime_UTR	34601019	34601207	.	-	.	Parent=Os03t0823800-01
Chr03	irgsp1_rep	CDS	34600919	34601018	.	-	0	Parent=Os03t0823800-01
Chr03	irgsp1_rep	CDS	34600716	34600813	.	-	2	Parent=Os03t0823800-01
Chr03	irgsp1_rep	CDS	34600453	34600629	.	-	0	Parent=Os03t0823800-01
Chr03	irgsp1_rep	CDS	34600238	34600338	.	-	0	Parent=Os03t0823800-01
Chr03	irgsp1_rep	CDS	34600054	34600129	.	-	1	Parent=Os03t0823800-01
Chr03	irgsp1_rep	CDS	34599908	34599967	.	-	0	Parent=Os03t0823800-01
Chr03	irgsp1_rep	CDS	34599646	34599830	.	-	0	Parent=Os03t0823800-01
Chr03	irgsp1_rep	CDS	34599404	34599500	.	-	1	Parent=Os03t0823800-01
Chr03	irgsp1_rep	CDS	34599222	34599308	.	-	0	Parent=Os03t0823800-01
Chr03	irgsp1_rep	CDS	34599059	34599117	.	-	0	Parent=Os03t0823800-01
Chr03	irgsp1_rep	CDS	34598858	34598949	.	-	1	Parent=Os03t0823800-01
Chr03	irgsp1_rep	CDS	34598268	34598345	.	-	2	Parent=Os03t0823800-01
Chr03	irgsp1_rep	CDS	34598009	34598169	.	-	2	Parent=Os03t0823800-01
Chr03	irgsp1_rep	CDS	34597699	34597917	.	-	0	Parent=Os03t0823800-01
Chr03	irgsp1_rep	three_prime_UTR	34597467	34597698	.	-	.	Parent=Os03t0823800-01
Chr03	irgsp1_rep	mRNA	34597455	34599459	.	-	.	ID=Os03t0823800-02;Name=Os03t0823800-02;Locus_id=Os03g0823800;Note=Similar to permease I.;Transcript_evidence=AK058223 (DDBJ%2C Best hit);ORF_evidence=NP_001149779.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Xanthine/uracil/vitamin C permease (IPR006043);NIAS_FLcDNA=001-010-G04;Expression=AK058223;TENOR=Os03t0823800-02;KEGG=Os03t0823800-02
Chr03	irgsp1_rep	five_prime_UTR	34599458	34599459	.	-	.	Parent=Os03t0823800-02
Chr03	irgsp1_rep	CDS	34599404	34599457	.	-	0	Parent=Os03t0823800-02
Chr03	irgsp1_rep	CDS	34599222	34599308	.	-	0	Parent=Os03t0823800-02
Chr03	irgsp1_rep	CDS	34599059	34599117	.	-	0	Parent=Os03t0823800-02
Chr03	irgsp1_rep	CDS	34598858	34598949	.	-	1	Parent=Os03t0823800-02
Chr03	irgsp1_rep	CDS	34598268	34598345	.	-	2	Parent=Os03t0823800-02
Chr03	irgsp1_rep	CDS	34598009	34598169	.	-	2	Parent=Os03t0823800-02
Chr03	irgsp1_rep	CDS	34597699	34597917	.	-	0	Parent=Os03t0823800-02
Chr03	irgsp1_rep	three_prime_UTR	34597455	34597698	.	-	.	Parent=Os03t0823800-02
Chr03	irgsp1_rep	mRNA	34602674	34605756	.	-	.	ID=Os03t0823900-00;Name=Os03t0823900-00;Locus_id=Os03g0823900;Note=Calmodulin binding protein-like domain containing protein.;Transcript_evidence=EU970985 (DDBJ);ORF_evidence=NP_001050439.2 (RefSeq);InterPro=Calmodulin binding protein-like (IPR012416);TENOR=Os03t0823900-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	34605683	34605756	.	-	.	Parent=Os03t0823900-00
Chr03	irgsp1_rep	CDS	34605585	34605682	.	-	0	Parent=Os03t0823900-00
Chr03	irgsp1_rep	CDS	34605403	34605478	.	-	1	Parent=Os03t0823900-00
Chr03	irgsp1_rep	CDS	34604838	34604890	.	-	0	Parent=Os03t0823900-00
Chr03	irgsp1_rep	CDS	34604429	34604717	.	-	1	Parent=Os03t0823900-00
Chr03	irgsp1_rep	three_prime_UTR	34603858	34604428	.	-	.	Parent=Os03t0823900-00
Chr03	irgsp1_rep	three_prime_UTR	34603177	34603746	.	-	.	Parent=Os03t0823900-00
Chr03	irgsp1_rep	three_prime_UTR	34602674	34602852	.	-	.	Parent=Os03t0823900-00
Chr03	irgsp1_rep	mRNA	34607594	34608174	.	-	.	ID=Os03t0824000-01;Name=Os03t0824000-01;Locus_id=Os03g0824000;Note=Peptidase S8 and S53%2C subtilisin%2C kexin%2C sedolisin domain containing protein.;Transcript_evidence=AK111129 (DDBJ%2C Best hit);ORF_evidence=A9NKD9 (UniProt);InterPro=Protein of unknown function DUF3743 (IPR022214);NIAS_FLcDNA=002-176-C10;Expression=AK111129;TENOR=Os03t0824000-01;KEGG=Os03t0824000-01
Chr03	irgsp1_rep	five_prime_UTR	34608144	34608174	.	-	.	Parent=Os03t0824000-01
Chr03	irgsp1_rep	CDS	34607856	34608143	.	-	0	Parent=Os03t0824000-01
Chr03	irgsp1_rep	three_prime_UTR	34607594	34607855	.	-	.	Parent=Os03t0824000-01
Chr03	irgsp1_rep	mRNA	34610054	34614454	.	-	.	ID=Os03t0824100-01;Name=Os03t0824100-01;Locus_id=Os03g0824100;RAP-DB Gene Symbol Synonym(s)=OspTAC2;RAP-DB Gene Name Synonym(s)=plastid transcriptionally active Chromosome protein 2;CGSNL Gene Symbol=pTAC2;CGSNL Gene Name=PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OspTAC2;Oryzabase Gene Name Synonym(s)=plastid transcriptionally active Chromosome protein 2;Note=Pentatricopeptide repeat protein%2C Regulation of chloroplast development;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical domain (IPR011990),Pentacotripeptide-repeat region of PROPR (IPR033443),Smr domain (IPR002625),Pentatricopeptide repeat (IPR002885);Manual Curation=October 24%2C 2016;Literature_PMID=27760723;Oryzabase=22605;TENOR=Os03t0824100-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	34614376	34614454	.	-	.	Parent=Os03t0824100-01
Chr03	irgsp1_rep	CDS	34612945	34614375	.	-	0	Parent=Os03t0824100-01
Chr03	irgsp1_rep	CDS	34612441	34612856	.	-	0	Parent=Os03t0824100-01
Chr03	irgsp1_rep	CDS	34611261	34611575	.	-	1	Parent=Os03t0824100-01
Chr03	irgsp1_rep	CDS	34611064	34611171	.	-	1	Parent=Os03t0824100-01
Chr03	irgsp1_rep	CDS	34610537	34610873	.	-	1	Parent=Os03t0824100-01
Chr03	irgsp1_rep	three_prime_UTR	34610054	34610536	.	-	.	Parent=Os03t0824100-01
Chr03	irgsp1_rep	mRNA	34614610	34616853	.	+	.	ID=Os03t0824200-01;Name=Os03t0824200-01;Locus_id=Os03g0824200;Note=Methyltransferase small domain containing protein.;Transcript_evidence=AK059711 (DDBJ%2C Best hit);ORF_evidence=B6TML1 (UniProt);GO=Biological Process: methylation (GO:0032259),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: methyltransferase activity (GO:0008168);InterPro=DNA methylase%2C N-6 adenine-specific%2C conserved site (IPR002052),Putative methylase (IPR004557),Methyltransferase small (IPR007848);NIAS_FLcDNA=001-032-F02;Expression=AK059711;TENOR=Os03t0824200-01;KEGG=Os03t0824200-01
Chr03	irgsp1_rep	five_prime_UTR	34614610	34614684	.	+	.	Parent=Os03t0824200-01
Chr03	irgsp1_rep	CDS	34614685	34614783	.	+	0	Parent=Os03t0824200-01
Chr03	irgsp1_rep	CDS	34615758	34616516	.	+	0	Parent=Os03t0824200-01
Chr03	irgsp1_rep	three_prime_UTR	34616517	34616853	.	+	.	Parent=Os03t0824200-01
Chr03	irgsp1_rep	mRNA	34622463	34625204	.	+	.	ID=Os03t0824300-00;Name=Os03t0824300-00;Locus_id=Os03g0824300;Note=Hypothetical conserved gene.;Transcript_evidence=EU944857 (DDBJ);ORF_evidence=NP_001051750.2 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);TENOR=Os03t0824300-00;KEGG=Os03t0824300-00
Chr03	irgsp1_rep	CDS	34622463	34622989	.	+	0	Parent=Os03t0824300-00
Chr03	irgsp1_rep	CDS	34623096	34623309	.	+	1	Parent=Os03t0824300-00
Chr03	irgsp1_rep	CDS	34623414	34623484	.	+	0	Parent=Os03t0824300-00
Chr03	irgsp1_rep	CDS	34623941	34624109	.	+	1	Parent=Os03t0824300-00
Chr03	irgsp1_rep	CDS	34624201	34624330	.	+	0	Parent=Os03t0824300-00
Chr03	irgsp1_rep	CDS	34624744	34625204	.	+	2	Parent=Os03t0824300-00
Chr03	irgsp1_rep	mRNA	34626025	34630315	.	-	.	ID=Os03t0824350-01;Name=Os03t0824350-01;Locus_id=Os03g0824350;Note=Conserved hypothetical protein.;Transcript_evidence=AK288763 (DDBJ%2C Best hit);ORF_evidence=B9EWT4 (UniProt);NIAS_FLcDNA=J090067F19;TENOR=Os03t0824350-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	34629932	34630315	.	-	.	Parent=Os03t0824350-01
Chr03	irgsp1_rep	five_prime_UTR	34627783	34628554	.	-	.	Parent=Os03t0824350-01
Chr03	irgsp1_rep	CDS	34627504	34627782	.	-	0	Parent=Os03t0824350-01
Chr03	irgsp1_rep	three_prime_UTR	34626575	34627503	.	-	.	Parent=Os03t0824350-01
Chr03	irgsp1_rep	three_prime_UTR	34626025	34626478	.	-	.	Parent=Os03t0824350-01
Chr03	irgsp1_rep	mRNA	34626917	34630307	.	-	.	ID=Os03t0824350-02;Name=Os03t0824350-02;Locus_id=Os03g0824350;Note=Conserved hypothetical protein.;Transcript_evidence=AK243596 (DDBJ%2C Best hit);ORF_evidence=B9EWT4 (UniProt);NIAS_FLcDNA=J100084D09;TENOR=Os03t0824350-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	34629932	34630307	.	-	.	Parent=Os03t0824350-02
Chr03	irgsp1_rep	five_prime_UTR	34627783	34628554	.	-	.	Parent=Os03t0824350-02
Chr03	irgsp1_rep	CDS	34627504	34627782	.	-	0	Parent=Os03t0824350-02
Chr03	irgsp1_rep	three_prime_UTR	34626917	34627503	.	-	.	Parent=Os03t0824350-02
Chr03	irgsp1_rep	mRNA	34630776	34633281	.	+	.	ID=Os03t0824400-01;Name=Os03t0824400-01;Locus_id=Os03g0824400;Note=Similar to Dolichol-phosphate mannosyltransferase (EC 2.4.1.83) (Dolichol- phosphate mannose synthase) (Dolichyl-phosphate beta-D- mannosyltransferase) (Mannose-P-dolichol synthase) (MPD synthase) (DPM synthase).;Transcript_evidence=AK104298 (DDBJ%2C Best hit),AK070153 (DDBJ%2C Best hit);ORF_evidence=Q9LMW5 (UniProt);InterPro=Glycosyl transferase%2C family 2 (IPR001173);NIAS_FLcDNA=001-009-D10,J023044M23;Oryzabase=15252;Expression=AK104298;TENOR=Os03t0824400-01;KEGG=Os03t0824400-01 (EC:2.4.1.83)
Chr03	irgsp1_rep	five_prime_UTR	34630776	34630953	.	+	.	Parent=Os03t0824400-01
Chr03	irgsp1_rep	CDS	34630954	34631063	.	+	0	Parent=Os03t0824400-01
Chr03	irgsp1_rep	CDS	34631653	34631752	.	+	1	Parent=Os03t0824400-01
Chr03	irgsp1_rep	CDS	34631859	34631892	.	+	0	Parent=Os03t0824400-01
Chr03	irgsp1_rep	CDS	34631973	34632049	.	+	2	Parent=Os03t0824400-01
Chr03	irgsp1_rep	CDS	34632149	34632174	.	+	0	Parent=Os03t0824400-01
Chr03	irgsp1_rep	CDS	34632474	34632638	.	+	1	Parent=Os03t0824400-01
Chr03	irgsp1_rep	CDS	34632720	34632834	.	+	1	Parent=Os03t0824400-01
Chr03	irgsp1_rep	CDS	34632960	34633064	.	+	0	Parent=Os03t0824400-01
Chr03	irgsp1_rep	three_prime_UTR	34633065	34633281	.	+	.	Parent=Os03t0824400-01
Chr03	irgsp1_rep	mRNA	34633640	34635244	.	-	.	ID=Os03t0824500-01;Name=Os03t0824500-01;Locus_id=Os03g0824500;Note=Conserved hypothetical protein.;Transcript_evidence=AK058990 (DDBJ%2C Best hit);ORF_evidence=A2XNI9 (UniProt);NIAS_FLcDNA=001-020-F07;Expression=AK058990;TENOR=Os03t0824500-01;KEGG=Os03t0824500-01
Chr03	irgsp1_rep	five_prime_UTR	34635171	34635244	.	-	.	Parent=Os03t0824500-01
Chr03	irgsp1_rep	CDS	34635048	34635170	.	-	0	Parent=Os03t0824500-01
Chr03	irgsp1_rep	CDS	34633887	34633916	.	-	0	Parent=Os03t0824500-01
Chr03	irgsp1_rep	three_prime_UTR	34633640	34633886	.	-	.	Parent=Os03t0824500-01
Chr03	irgsp1_rep	mRNA	34636893	34638452	.	+	.	ID=Os03t0824600-00;Name=Os03t0824600-00;Locus_id=Os03g0824600;Note=Similar to cytokinin-N-glucosyltransferase 1.;Transcript_evidence=tplb0017i08 (Wheat FLcDNA);ORF_evidence=NP_001149878.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os03t0824600-00;KEGG=Os03t0824600-00
Chr03	irgsp1_rep	CDS	34636893	34637460	.	+	0	Parent=Os03t0824600-00
Chr03	irgsp1_rep	CDS	34637544	34638439	.	+	2	Parent=Os03t0824600-00
Chr03	irgsp1_rep	three_prime_UTR	34638440	34638452	.	+	.	Parent=Os03t0824600-00
Chr03	irgsp1_rep	mRNA	34637190	34638351	.	-	.	ID=Os03t0824650-00;Name=Os03t0824650-00;Locus_id=Os03g0824650;Note=Hypothetical protein.;Transcript_evidence=AK358998 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0824650-00
Chr03	irgsp1_rep	five_prime_UTR	34637764	34638351	.	-	.	Parent=Os03t0824650-00
Chr03	irgsp1_rep	CDS	34637529	34637763	.	-	0	Parent=Os03t0824650-00
Chr03	irgsp1_rep	CDS	34637237	34637454	.	-	2	Parent=Os03t0824650-00
Chr03	irgsp1_rep	three_prime_UTR	34637190	34637236	.	-	.	Parent=Os03t0824650-00
Chr03	irgsp1_rep	mRNA	34663375	34668215	.	+	.	ID=Os03t0825300-01;Name=Os03t0825300-01;Locus_id=Os03g0825300;CGSNL Gene Symbol=RLCK119;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 119;Oryzabase Gene Symbol Synonym(s)=OsRLCK119%2C OsBSK4%2C BSK4;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 119%2C BR-signaling kinase 4%2C brassinosteroid-signaling kinase 4%2C brassinosteroid-SIGNALING KINASE 4;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK105593 (DDBJ%2C Best hit);ORF_evidence=B6UD08 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026);NIAS_FLcDNA=001-129-A09;Oryzabase=18825;Expression=AK105593;TENOR=Os03t0825300-01;KEGG=Os03t0825300-01
Chr03	irgsp1_rep	five_prime_UTR	34663375	34663591	.	+	.	Parent=Os03t0825300-01
Chr03	irgsp1_rep	CDS	34663592	34663658	.	+	0	Parent=Os03t0825300-01
Chr03	irgsp1_rep	CDS	34664235	34664461	.	+	2	Parent=Os03t0825300-01
Chr03	irgsp1_rep	CDS	34664554	34664689	.	+	0	Parent=Os03t0825300-01
Chr03	irgsp1_rep	CDS	34665232	34665365	.	+	2	Parent=Os03t0825300-01
Chr03	irgsp1_rep	CDS	34665451	34665556	.	+	0	Parent=Os03t0825300-01
Chr03	irgsp1_rep	CDS	34666016	34666101	.	+	2	Parent=Os03t0825300-01
Chr03	irgsp1_rep	CDS	34666173	34666246	.	+	0	Parent=Os03t0825300-01
Chr03	irgsp1_rep	CDS	34666716	34666779	.	+	1	Parent=Os03t0825300-01
Chr03	irgsp1_rep	CDS	34667332	34667448	.	+	0	Parent=Os03t0825300-01
Chr03	irgsp1_rep	CDS	34667636	34667878	.	+	0	Parent=Os03t0825300-01
Chr03	irgsp1_rep	three_prime_UTR	34667879	34668215	.	+	.	Parent=Os03t0825300-01
Chr03	irgsp1_rep	mRNA	34663422	34668094	.	+	.	ID=Os03t0825300-02;Name=Os03t0825300-02;Locus_id=Os03g0825300;CGSNL Gene Symbol=RLCK119;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 119;Oryzabase Gene Symbol Synonym(s)=OsRLCK119%2C OsBSK4%2C BSK4;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 119%2C BR-signaling kinase 4%2C brassinosteroid-signaling kinase 4%2C brassinosteroid-SIGNALING KINASE 4;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK102693 (DDBJ%2C Best hit);ORF_evidence=B6UD08 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033103D19;Oryzabase=18825;Expression=AK102693;TENOR=Os03t0825300-02;KEGG=Os03t0825300-02
Chr03	irgsp1_rep	five_prime_UTR	34663422	34663591	.	+	.	Parent=Os03t0825300-02
Chr03	irgsp1_rep	CDS	34663592	34663658	.	+	0	Parent=Os03t0825300-02
Chr03	irgsp1_rep	CDS	34664235	34664461	.	+	2	Parent=Os03t0825300-02
Chr03	irgsp1_rep	CDS	34664554	34664689	.	+	0	Parent=Os03t0825300-02
Chr03	irgsp1_rep	CDS	34665232	34665365	.	+	2	Parent=Os03t0825300-02
Chr03	irgsp1_rep	CDS	34665451	34665556	.	+	0	Parent=Os03t0825300-02
Chr03	irgsp1_rep	CDS	34666016	34666101	.	+	2	Parent=Os03t0825300-02
Chr03	irgsp1_rep	CDS	34666173	34666361	.	+	0	Parent=Os03t0825300-02
Chr03	irgsp1_rep	CDS	34666618	34666779	.	+	0	Parent=Os03t0825300-02
Chr03	irgsp1_rep	CDS	34667332	34667448	.	+	0	Parent=Os03t0825300-02
Chr03	irgsp1_rep	CDS	34667636	34667878	.	+	0	Parent=Os03t0825300-02
Chr03	irgsp1_rep	three_prime_UTR	34667879	34668094	.	+	.	Parent=Os03t0825300-02
Chr03	irgsp1_rep	mRNA	34663449	34668223	.	+	.	ID=Os03t0825300-03;Name=Os03t0825300-03;Locus_id=Os03g0825300;CGSNL Gene Symbol=RLCK119;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 119;Oryzabase Gene Symbol Synonym(s)=OsRLCK119%2C OsBSK4%2C BSK4;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 119%2C BR-signaling kinase 4%2C brassinosteroid-signaling kinase 4%2C brassinosteroid-SIGNALING KINASE 4;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK072216 (DDBJ%2C Best hit);ORF_evidence=B6UD08 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013168J03;Oryzabase=18825;Expression=AK072216;TENOR=Os03t0825300-03;KEGG=Os03t0825300-03
Chr03	irgsp1_rep	five_prime_UTR	34663449	34663591	.	+	.	Parent=Os03t0825300-03
Chr03	irgsp1_rep	CDS	34663592	34663658	.	+	0	Parent=Os03t0825300-03
Chr03	irgsp1_rep	CDS	34664235	34664461	.	+	2	Parent=Os03t0825300-03
Chr03	irgsp1_rep	CDS	34664554	34664689	.	+	0	Parent=Os03t0825300-03
Chr03	irgsp1_rep	CDS	34665232	34665365	.	+	2	Parent=Os03t0825300-03
Chr03	irgsp1_rep	CDS	34665451	34665556	.	+	0	Parent=Os03t0825300-03
Chr03	irgsp1_rep	CDS	34666016	34666101	.	+	2	Parent=Os03t0825300-03
Chr03	irgsp1_rep	CDS	34666173	34666361	.	+	0	Parent=Os03t0825300-03
Chr03	irgsp1_rep	CDS	34666618	34666779	.	+	0	Parent=Os03t0825300-03
Chr03	irgsp1_rep	CDS	34667332	34667448	.	+	0	Parent=Os03t0825300-03
Chr03	irgsp1_rep	CDS	34667636	34667878	.	+	0	Parent=Os03t0825300-03
Chr03	irgsp1_rep	three_prime_UTR	34667879	34668223	.	+	.	Parent=Os03t0825300-03
Chr03	irgsp1_rep	mRNA	34669005	34671141	.	-	.	ID=Os03t0825400-01;Name=Os03t0825400-01;Locus_id=Os03g0825400;Note=Similar to Mitochondrial import inner membrane translocase subunit Tim10.;Transcript_evidence=AK059163 (DDBJ%2C Best hit);ORF_evidence=B6U5I0 (UniProt);GO=Biological Process: protein targeting to mitochondrion (GO:0006626),Biological Process: protein import into mitochondrial inner membrane (GO:0045039),Cellular Component: mitochondrial intermembrane space protein transporter complex (GO:0042719);InterPro=Mitochondrial inner membrane translocase complex%2C Tim8/9/10/13-zinc finger-like (IPR004217);NIAS_FLcDNA=001-023-D09;Expression=AK059163;TENOR=Os03t0825400-01;KEGG=Os03t0825400-01
Chr03	irgsp1_rep	five_prime_UTR	34671014	34671141	.	-	.	Parent=Os03t0825400-01
Chr03	irgsp1_rep	five_prime_UTR	34670904	34670926	.	-	.	Parent=Os03t0825400-01
Chr03	irgsp1_rep	CDS	34670862	34670903	.	-	0	Parent=Os03t0825400-01
Chr03	irgsp1_rep	CDS	34670708	34670760	.	-	0	Parent=Os03t0825400-01
Chr03	irgsp1_rep	CDS	34670102	34670140	.	-	1	Parent=Os03t0825400-01
Chr03	irgsp1_rep	CDS	34669757	34669827	.	-	1	Parent=Os03t0825400-01
Chr03	irgsp1_rep	CDS	34669218	34669264	.	-	2	Parent=Os03t0825400-01
Chr03	irgsp1_rep	three_prime_UTR	34669005	34669217	.	-	.	Parent=Os03t0825400-01
Chr03	irgsp1_rep	mRNA	34671302	34674491	.	+	.	ID=Os03t0825500-01;Name=Os03t0825500-01;Locus_id=Os03g0825500;Note=Transcription antitermination protein%2C NusG%2C N-terminal domain containing protein.;Transcript_evidence=AK058472 (DDBJ%2C Best hit);ORF_evidence=NP_001151355.1 (RefSeq);GO=Biological Process: positive regulation of transcription elongation from RNA polymerase II promoter (GO:0032968);InterPro=KOW (IPR005824),Transcription antitermination protein%2C NusG%2C N-terminal (IPR006645),Translation protein SH3-like (IPR008991),Translation protein SH3-like%2C subgroup (IPR014722);NIAS_FLcDNA=001-016-B11;Expression=AK058472;TENOR=Os03t0825500-01;KEGG=Os03t0825500-01
Chr03	irgsp1_rep	five_prime_UTR	34671302	34671346	.	+	.	Parent=Os03t0825500-01
Chr03	irgsp1_rep	CDS	34671347	34671757	.	+	0	Parent=Os03t0825500-01
Chr03	irgsp1_rep	CDS	34672236	34672414	.	+	0	Parent=Os03t0825500-01
Chr03	irgsp1_rep	CDS	34672905	34673226	.	+	1	Parent=Os03t0825500-01
Chr03	irgsp1_rep	CDS	34673359	34673439	.	+	0	Parent=Os03t0825500-01
Chr03	irgsp1_rep	three_prime_UTR	34673440	34673451	.	+	.	Parent=Os03t0825500-01
Chr03	irgsp1_rep	three_prime_UTR	34674063	34674194	.	+	.	Parent=Os03t0825500-01
Chr03	irgsp1_rep	three_prime_UTR	34674294	34674491	.	+	.	Parent=Os03t0825500-01
Chr03	irgsp1_rep	mRNA	34675249	34676923	.	-	.	ID=Os03t0825600-01;Name=Os03t0825600-01;Locus_id=Os03g0825600;Note=Hypothetical conserved gene.;Transcript_evidence=AK121566 (DDBJ%2C Best hit);ORF_evidence=Q94GE3 (UniProt);InterPro=Domain of unknown function DUF641%2C plant (IPR006943);NIAS_FLcDNA=J033034N15;Expression=AK121566;TENOR=Os03t0825600-01;KEGG=Os03t0825600-01
Chr03	irgsp1_rep	five_prime_UTR	34676871	34676923	.	-	.	Parent=Os03t0825600-01
Chr03	irgsp1_rep	CDS	34675389	34676870	.	-	0	Parent=Os03t0825600-01
Chr03	irgsp1_rep	three_prime_UTR	34675249	34675388	.	-	.	Parent=Os03t0825600-01
Chr03	irgsp1_rep	mRNA	34674979	34676918	.	-	.	ID=Os03t0825600-02;Name=Os03t0825600-02;Locus_id=Os03g0825600;Note=Conserved hypothetical protein.;Transcript_evidence=AK063312 (DDBJ%2C Best hit);ORF_evidence=Q94GE3 (UniProt);NIAS_FLcDNA=001-113-G04;TENOR=Os03t0825600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	34676871	34676918	.	-	.	Parent=Os03t0825600-02
Chr03	irgsp1_rep	CDS	34676771	34676870	.	-	0	Parent=Os03t0825600-02
Chr03	irgsp1_rep	CDS	34676020	34676276	.	-	2	Parent=Os03t0825600-02
Chr03	irgsp1_rep	three_prime_UTR	34674979	34676019	.	-	.	Parent=Os03t0825600-02
Chr03	irgsp1_rep	mRNA	34680009	34687904	.	+	.	ID=Os03t0825700-01;Name=Os03t0825700-01;Locus_id=Os03g0825700;RAP-DB Gene Symbol Synonym(s)=Os DEX1%2C OsDEX1;RAP-DB Gene Name Synonym(s)=DEFECTIVE IN EXINE PATTERN FORMATION 1%2C Defective in Exine Formation 1;CGSNL Gene Symbol=DEX1;CGSNL Gene Name=DEFECTIVE IN EXINE PATTERN FORMATION 1;Oryzabase Gene Symbol Synonym(s)=Os DEX1%2C OsDEX1;Oryzabase Gene Name Synonym(s)=Defective in Exine Formation 1;Note=Ca<sup>2+</sup> binding protein%2C Regulation of tapetal cell degradation and pollen formation;Transcript_evidence=XM_015775749,AK067902;ORF_evidence=Q10BA5;InterPro=Quinoprotein alcohol dehydrogenase-like domain (IPR027295);NIAS_FLcDNA=J013121O19;Manual Curation=November 8%2C 2016;Literature_PMID=27663411;Oryzabase=18163;Expression=AK067902;TENOR=Os03t0825700-01;KEGG=Os03t0825700-01
Chr03	irgsp1_rep	five_prime_UTR	34680009	34680156	.	+	.	Parent=Os03t0825700-01
Chr03	irgsp1_rep	CDS	34680157	34680293	.	+	0	Parent=Os03t0825700-01
Chr03	irgsp1_rep	CDS	34681892	34682002	.	+	1	Parent=Os03t0825700-01
Chr03	irgsp1_rep	CDS	34682411	34682493	.	+	1	Parent=Os03t0825700-01
Chr03	irgsp1_rep	CDS	34682701	34682818	.	+	2	Parent=Os03t0825700-01
Chr03	irgsp1_rep	CDS	34682917	34683128	.	+	1	Parent=Os03t0825700-01
Chr03	irgsp1_rep	CDS	34683581	34684065	.	+	2	Parent=Os03t0825700-01
Chr03	irgsp1_rep	CDS	34684145	34684215	.	+	0	Parent=Os03t0825700-01
Chr03	irgsp1_rep	CDS	34684607	34684863	.	+	1	Parent=Os03t0825700-01
Chr03	irgsp1_rep	CDS	34685234	34685411	.	+	2	Parent=Os03t0825700-01
Chr03	irgsp1_rep	CDS	34685763	34686050	.	+	1	Parent=Os03t0825700-01
Chr03	irgsp1_rep	CDS	34686139	34686256	.	+	1	Parent=Os03t0825700-01
Chr03	irgsp1_rep	CDS	34686988	34687170	.	+	0	Parent=Os03t0825700-01
Chr03	irgsp1_rep	CDS	34687262	34687576	.	+	0	Parent=Os03t0825700-01
Chr03	irgsp1_rep	three_prime_UTR	34687577	34687904	.	+	.	Parent=Os03t0825700-01
Chr03	irgsp1_rep	mRNA	34688287	34690676	.	-	.	ID=Os03t0825800-01;Name=Os03t0825800-01;Locus_id=Os03g0825800;CGSNL Gene Symbol=RLCK120;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 120;Oryzabase Gene Symbol Synonym(s)=OsRLCK120;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 120;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK108602 (DDBJ%2C Best hit);ORF_evidence=Q10BA3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=002-146-E12;Oryzabase=18826;Expression=AK108602;TENOR=Os03t0825800-01;KEGG=Os03t0825800-01 (EC:2.7.11.1)
Chr03	irgsp1_rep	five_prime_UTR	34690632	34690676	.	-	.	Parent=Os03t0825800-01
Chr03	irgsp1_rep	CDS	34690295	34690631	.	-	0	Parent=Os03t0825800-01
Chr03	irgsp1_rep	CDS	34689858	34690021	.	-	2	Parent=Os03t0825800-01
Chr03	irgsp1_rep	CDS	34689586	34689751	.	-	0	Parent=Os03t0825800-01
Chr03	irgsp1_rep	CDS	34689338	34689427	.	-	2	Parent=Os03t0825800-01
Chr03	irgsp1_rep	CDS	34688950	34689245	.	-	2	Parent=Os03t0825800-01
Chr03	irgsp1_rep	CDS	34688573	34688851	.	-	0	Parent=Os03t0825800-01
Chr03	irgsp1_rep	three_prime_UTR	34688287	34688572	.	-	.	Parent=Os03t0825800-01
Chr03	irgsp1_rep	mRNA	34688562	34690911	.	+	.	ID=Os03t0825850-01;Name=Os03t0825850-01;Locus_id=Os03g0825850;Note=Hypothetical protein.;Transcript_evidence=AK110992 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-174-D11;Expression=AK110992;TENOR=Os03t0825850-01;KEGG=Os03t0825850-01
Chr03	irgsp1_rep	five_prime_UTR	34688562	34688569	.	+	.	Parent=Os03t0825850-01
Chr03	irgsp1_rep	CDS	34688570	34688872	.	+	0	Parent=Os03t0825850-01
Chr03	irgsp1_rep	CDS	34688977	34689216	.	+	0	Parent=Os03t0825850-01
Chr03	irgsp1_rep	three_prime_UTR	34689217	34689253	.	+	.	Parent=Os03t0825850-01
Chr03	irgsp1_rep	three_prime_UTR	34689353	34689475	.	+	.	Parent=Os03t0825850-01
Chr03	irgsp1_rep	three_prime_UTR	34690162	34690544	.	+	.	Parent=Os03t0825850-01
Chr03	irgsp1_rep	three_prime_UTR	34690622	34690911	.	+	.	Parent=Os03t0825850-01
Chr03	irgsp1_rep	mRNA	34692911	34696198	.	-	.	ID=Os03t0825900-01;Name=Os03t0825900-01;Locus_id=Os03g0825900;Note=Conserved hypothetical protein.;Transcript_evidence=AK109694 (DDBJ%2C Best hit);ORF_evidence=A2XNJ8 (UniProt);NIAS_FLcDNA=002-145-E10;Expression=AK109694;TENOR=Os03t0825900-01;KEGG=Os03t0825900-01
Chr03	irgsp1_rep	five_prime_UTR	34696137	34696198	.	-	.	Parent=Os03t0825900-01
Chr03	irgsp1_rep	CDS	34695165	34696136	.	-	0	Parent=Os03t0825900-01
Chr03	irgsp1_rep	three_prime_UTR	34694846	34695164	.	-	.	Parent=Os03t0825900-01
Chr03	irgsp1_rep	three_prime_UTR	34692911	34693162	.	-	.	Parent=Os03t0825900-01
Chr03	irgsp1_rep	mRNA	34700840	34705414	.	-	.	ID=Os03t0826000-01;Name=Os03t0826000-01;Locus_id=Os03g0826000;Note=Conserved hypothetical protein.;Transcript_evidence=AK072695 (DDBJ%2C Best hit);ORF_evidence=Q94GE7 (UniProt);NIAS_FLcDNA=J023136O11;Expression=AK072695;TENOR=Os03t0826000-01;KEGG=Os03t0826000-01
Chr03	irgsp1_rep	five_prime_UTR	34705263	34705414	.	-	.	Parent=Os03t0826000-01
Chr03	irgsp1_rep	five_prime_UTR	34704578	34704649	.	-	.	Parent=Os03t0826000-01
Chr03	irgsp1_rep	CDS	34704563	34704577	.	-	0	Parent=Os03t0826000-01
Chr03	irgsp1_rep	CDS	34702999	34704459	.	-	0	Parent=Os03t0826000-01
Chr03	irgsp1_rep	CDS	34702199	34702388	.	-	0	Parent=Os03t0826000-01
Chr03	irgsp1_rep	CDS	34701078	34701688	.	-	2	Parent=Os03t0826000-01
Chr03	irgsp1_rep	three_prime_UTR	34700840	34701077	.	-	.	Parent=Os03t0826000-01
Chr03	irgsp1_rep	mRNA	34700976	34704460	.	+	.	ID=Os03t0826100-00;Name=Os03t0826100-00;Locus_id=Os03g0826100;Note=Hypothetical protein.;Transcript_evidence=tplb0036a04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0826100-00
Chr03	irgsp1_rep	five_prime_UTR	34700976	34701111	.	+	.	Parent=Os03t0826100-00
Chr03	irgsp1_rep	CDS	34701112	34701462	.	+	0	Parent=Os03t0826100-00
Chr03	irgsp1_rep	three_prime_UTR	34701463	34701658	.	+	.	Parent=Os03t0826100-00
Chr03	irgsp1_rep	three_prime_UTR	34702169	34702386	.	+	.	Parent=Os03t0826100-00
Chr03	irgsp1_rep	three_prime_UTR	34702997	34704460	.	+	.	Parent=Os03t0826100-00
Chr03	irgsp1_rep	mRNA	34707024	34707736	.	+	.	ID=Os03t0826200-01;Name=Os03t0826200-01;Locus_id=Os03g0826200;Note=Conserved hypothetical protein.;Transcript_evidence=AK121165 (DDBJ%2C Best hit);ORF_evidence=B8AMQ1 (UniProt);NIAS_FLcDNA=J023080J02;TENOR=Os03t0826200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	34707024	34707095	.	+	.	Parent=Os03t0826200-01
Chr03	irgsp1_rep	CDS	34707096	34707124	.	+	0	Parent=Os03t0826200-01
Chr03	irgsp1_rep	CDS	34707172	34707250	.	+	1	Parent=Os03t0826200-01
Chr03	irgsp1_rep	CDS	34707334	34707609	.	+	0	Parent=Os03t0826200-01
Chr03	irgsp1_rep	three_prime_UTR	34707610	34707736	.	+	.	Parent=Os03t0826200-01
Chr03	irgsp1_rep	mRNA	34708103	34711323	.	-	.	ID=Os03t0826300-00;Name=Os03t0826300-00;Locus_id=Os03g0826300;Note=Similar to predicted protein.;Transcript_evidence=BT054756 (DDBJ);ORF_evidence=NP_172209.4 (RefSeq);InterPro=Domain of unknown function DUF250 (IPR004853);TENOR=Os03t0826300-00;KEGG=Os03t0826300-00
Chr03	irgsp1_rep	five_prime_UTR	34711055	34711323	.	-	.	Parent=Os03t0826300-00
Chr03	irgsp1_rep	five_prime_UTR	34710951	34710997	.	-	.	Parent=Os03t0826300-00
Chr03	irgsp1_rep	CDS	34710760	34710950	.	-	0	Parent=Os03t0826300-00
Chr03	irgsp1_rep	CDS	34710464	34710653	.	-	1	Parent=Os03t0826300-00
Chr03	irgsp1_rep	CDS	34710141	34710280	.	-	0	Parent=Os03t0826300-00
Chr03	irgsp1_rep	CDS	34709878	34710007	.	-	1	Parent=Os03t0826300-00
Chr03	irgsp1_rep	CDS	34709635	34709733	.	-	0	Parent=Os03t0826300-00
Chr03	irgsp1_rep	CDS	34709292	34709446	.	-	0	Parent=Os03t0826300-00
Chr03	irgsp1_rep	CDS	34708792	34708908	.	-	1	Parent=Os03t0826300-00
Chr03	irgsp1_rep	CDS	34708551	34708648	.	-	1	Parent=Os03t0826300-00
Chr03	irgsp1_rep	CDS	34708416	34708459	.	-	2	Parent=Os03t0826300-00
Chr03	irgsp1_rep	three_prime_UTR	34708103	34708415	.	-	.	Parent=Os03t0826300-00
Chr03	irgsp1_rep	mRNA	34712797	34715006	.	+	.	ID=Os03t0826400-01;Name=Os03t0826400-01;Locus_id=Os03g0826400;CGSNL Gene Symbol=C3H25;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 25;Oryzabase Gene Symbol Synonym(s)=OsC3H25;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 25;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK071472 (DDBJ%2C Best hit);ORF_evidence=NP_001149007.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA recognition motif domain (IPR000504),Zinc finger%2C CCCH-type (IPR000571),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023095J08;Oryzabase=8589;Expression=AK071472;TENOR=Os03t0826400-01;KEGG=Os03t0826400-01
Chr03	irgsp1_rep	five_prime_UTR	34712797	34712946	.	+	.	Parent=Os03t0826400-01
Chr03	irgsp1_rep	CDS	34712947	34713119	.	+	0	Parent=Os03t0826400-01
Chr03	irgsp1_rep	CDS	34713222	34713331	.	+	1	Parent=Os03t0826400-01
Chr03	irgsp1_rep	CDS	34713451	34713638	.	+	2	Parent=Os03t0826400-01
Chr03	irgsp1_rep	CDS	34714398	34714865	.	+	0	Parent=Os03t0826400-01
Chr03	irgsp1_rep	three_prime_UTR	34714866	34715006	.	+	.	Parent=Os03t0826400-01
Chr03	irgsp1_rep	mRNA	34715521	34721072	.	-	.	ID=Os03t0826500-01;Name=Os03t0826500-01;Locus_id=Os03g0826500;CGSNL Gene Symbol=ASA1;CGSNL Gene Name=ANTHRANILATE SYNTHASE ALPHA-SUBUNIT 1;Oryzabase Gene Symbol Synonym(s)=OASA1 (%3DASA1)%2C OsASA1%2C OASA1%2C OASA1(D323N)%2C OASA1D;Oryzabase Gene Name Synonym(s)=anthranilate synthase alpha subunit 1%2C feedback-insensitive a subunit of rice AS;Note=Anthranilate synthase alpha 1 subunit.;Transcript_evidence=AK072053 (DDBJ%2C Best hit);ORF_evidence=Q9XJ30 (UniProt);GO=Biological Process: tryptophan biosynthetic process (GO:0000162),Biological Process: biosynthetic process (GO:0009058),Molecular Function: anthranilate synthase activity (GO:0004049),Molecular Function: oxo-acid-lyase activity (GO:0016833);InterPro=Anthranilate synthase component I%2C PabB-like (IPR005256),ADC synthase (IPR005801),Anthranilate synthase component I%2C N-terminal (IPR006805),Chorismate binding%2C C-terminal (IPR015890),Anthranilate synthase component I (IPR019999);NIAS_FLcDNA=J013112E10;Oryzabase=6742;Expression=AK072053;TENOR=Os03t0826500-01;KEGG=Os03t0826500-01 (EC:4.1.3.27)
Chr03	irgsp1_rep	five_prime_UTR	34720803	34721072	.	-	.	Parent=Os03t0826500-01
Chr03	irgsp1_rep	CDS	34720670	34720802	.	-	0	Parent=Os03t0826500-01
Chr03	irgsp1_rep	CDS	34720390	34720583	.	-	2	Parent=Os03t0826500-01
Chr03	irgsp1_rep	CDS	34720127	34720316	.	-	0	Parent=Os03t0826500-01
Chr03	irgsp1_rep	CDS	34719488	34719639	.	-	2	Parent=Os03t0826500-01
Chr03	irgsp1_rep	CDS	34718826	34718941	.	-	0	Parent=Os03t0826500-01
Chr03	irgsp1_rep	CDS	34718464	34718710	.	-	1	Parent=Os03t0826500-01
Chr03	irgsp1_rep	CDS	34718312	34718368	.	-	0	Parent=Os03t0826500-01
Chr03	irgsp1_rep	CDS	34717376	34717528	.	-	0	Parent=Os03t0826500-01
Chr03	irgsp1_rep	CDS	34716694	34716774	.	-	0	Parent=Os03t0826500-01
Chr03	irgsp1_rep	CDS	34716412	34716498	.	-	0	Parent=Os03t0826500-01
Chr03	irgsp1_rep	CDS	34715700	34716023	.	-	0	Parent=Os03t0826500-01
Chr03	irgsp1_rep	three_prime_UTR	34715521	34715699	.	-	.	Parent=Os03t0826500-01
Chr03	irgsp1_rep	mRNA	34724328	34727241	.	+	.	ID=Os03t0826600-01;Name=Os03t0826600-01;Locus_id=Os03g0826600;CGSNL Gene Symbol=NPC1;CGSNL Gene Name=NON-SPECIFIC PHOSPHOLIPASE C1;Oryzabase Gene Symbol Synonym(s)=OsNPC1;Oryzabase Gene Name Synonym(s)=Non-specific phospholipase C1;Note=Similar to Phospholipase (Fragment).;Transcript_evidence=AK101187 (DDBJ%2C Best hit),AK067741 (DDBJ%2C Best hit);ORF_evidence=B6U8P0 (UniProt);GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Phosphoesterase (IPR007312);NIAS_FLcDNA=J033030C17,J013116N13;Oryzabase=21048;Expression=AK101187;TENOR=Os03t0826600-01;KEGG=Os03t0826600-01
Chr03	irgsp1_rep	five_prime_UTR	34724328	34724438	.	+	.	Parent=Os03t0826600-01
Chr03	irgsp1_rep	CDS	34724439	34725582	.	+	0	Parent=Os03t0826600-01
Chr03	irgsp1_rep	CDS	34726124	34726300	.	+	2	Parent=Os03t0826600-01
Chr03	irgsp1_rep	CDS	34726545	34726861	.	+	2	Parent=Os03t0826600-01
Chr03	irgsp1_rep	three_prime_UTR	34726862	34727241	.	+	.	Parent=Os03t0826600-01
Chr03	irgsp1_rep	mRNA	34724353	34727241	.	+	.	ID=Os03t0826600-02;Name=Os03t0826600-02;Locus_id=Os03g0826600;RAP-DB Gene Symbol Synonym(s)=NPC1%2C OsNPC1;RAP-DB Gene Name Synonym(s)=NON-SPECIFIC PHOSPHOLIPASE C1%2C Non-specific phospholipase C1;CGSNL Gene Symbol=NPC1;CGSNL Gene Name=NON-SPECIFIC PHOSPHOLIPASE C1;Oryzabase Gene Symbol Synonym(s)=OsNPC1;Oryzabase Gene Name Synonym(s)=Non-specific phospholipase C1;Note=Non-specific phospholipase C1%2C Modulation of silicon distribution%2C Mechanical strength%2C Seed shattering;Transcript_evidence=AK099803;ORF_evidence=Q0DM59;GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Phosphoesterase (IPR007312),Alkaline-phosphatase-like%2C core domain (IPR017850);NIAS_FLcDNA=J013098B07;Manual Curation=July 1%2C 2016;Literature_PMID=26991499;Oryzabase=21048;TENOR=Os03t0826600-02
Chr03	irgsp1_rep	five_prime_UTR	34724353	34724428	.	+	.	Parent=Os03t0826600-02
Chr03	irgsp1_rep	five_prime_UTR	34724831	34724846	.	+	.	Parent=Os03t0826600-02
Chr03	irgsp1_rep	CDS	34724847	34725582	.	+	0	Parent=Os03t0826600-02
Chr03	irgsp1_rep	CDS	34726124	34726300	.	+	2	Parent=Os03t0826600-02
Chr03	irgsp1_rep	CDS	34726545	34726861	.	+	2	Parent=Os03t0826600-02
Chr03	irgsp1_rep	three_prime_UTR	34726862	34727241	.	+	.	Parent=Os03t0826600-02
Chr03	irgsp1_rep	mRNA	34728221	34731529	.	-	.	ID=Os03t0826700-02;Name=Os03t0826700-02;Locus_id=Os03g0826700;Note=SAM (and some other nucleotide) binding motif domain containing protein.;Transcript_evidence=AK071165 (DDBJ%2C Best hit),AK104387 (DDBJ%2C Best hit),AK104778 (DDBJ%2C Best hit);ORF_evidence=B8AMQ3 (UniProt);NIAS_FLcDNA=J023081M24,006-201-F01,001-039-C03;Expression=AK071165;TENOR=Os03t0826700-02;KEGG=Os03t0826700-02
Chr03	irgsp1_rep	five_prime_UTR	34731466	34731529	.	-	.	Parent=Os03t0826700-02
Chr03	irgsp1_rep	CDS	34731408	34731465	.	-	0	Parent=Os03t0826700-02
Chr03	irgsp1_rep	CDS	34731212	34731288	.	-	2	Parent=Os03t0826700-02
Chr03	irgsp1_rep	CDS	34729871	34730004	.	-	0	Parent=Os03t0826700-02
Chr03	irgsp1_rep	CDS	34729246	34729388	.	-	1	Parent=Os03t0826700-02
Chr03	irgsp1_rep	CDS	34729065	34729136	.	-	2	Parent=Os03t0826700-02
Chr03	irgsp1_rep	CDS	34728868	34728981	.	-	2	Parent=Os03t0826700-02
Chr03	irgsp1_rep	CDS	34728632	34728786	.	-	2	Parent=Os03t0826700-02
Chr03	irgsp1_rep	three_prime_UTR	34728221	34728631	.	-	.	Parent=Os03t0826700-02
Chr03	irgsp1_rep	mRNA	34733490	34734706	.	-	.	ID=Os03t0826800-01;Name=Os03t0826800-01;Locus_id=Os03g0826800;Note=Conserved hypothetical protein.;Transcript_evidence=AK119789 (DDBJ%2C Best hit),AK065702 (DDBJ%2C Best hit);ORF_evidence=Q94GF4 (UniProt);NIAS_FLcDNA=002-174-G12,J013035P06;Oryzabase=20468;Expression=AK119789;TENOR=Os03t0826800-01;KEGG=Os03t0826800-01
Chr03	irgsp1_rep	five_prime_UTR	34734510	34734706	.	-	.	Parent=Os03t0826800-01
Chr03	irgsp1_rep	CDS	34734455	34734509	.	-	0	Parent=Os03t0826800-01
Chr03	irgsp1_rep	CDS	34734109	34734367	.	-	2	Parent=Os03t0826800-01
Chr03	irgsp1_rep	CDS	34733833	34733950	.	-	1	Parent=Os03t0826800-01
Chr03	irgsp1_rep	three_prime_UTR	34733490	34733832	.	-	.	Parent=Os03t0826800-01
Chr03	irgsp1_rep	mRNA	34739011	34740504	.	-	.	ID=Os03t0826900-01;Name=Os03t0826900-01;Locus_id=Os03g0826900;Oryzabase Gene Symbol Synonym(s)=OsEnS-58;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 58;Note=Conserved hypothetical protein.;Transcript_evidence=AK099709 (DDBJ%2C Best hit);ORF_evidence=Q94GF5 (UniProt);NIAS_FLcDNA=J013075N13;Oryzabase=18382;TENOR=Os03t0826900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	34740244	34740504	.	-	.	Parent=Os03t0826900-01
Chr03	irgsp1_rep	CDS	34740152	34740243	.	-	0	Parent=Os03t0826900-01
Chr03	irgsp1_rep	CDS	34739998	34740110	.	-	1	Parent=Os03t0826900-01
Chr03	irgsp1_rep	CDS	34739898	34739914	.	-	2	Parent=Os03t0826900-01
Chr03	irgsp1_rep	three_prime_UTR	34739664	34739897	.	-	.	Parent=Os03t0826900-01
Chr03	irgsp1_rep	three_prime_UTR	34739011	34739578	.	-	.	Parent=Os03t0826900-01
Chr03	irgsp1_rep	mRNA	34756011	34758745	.	+	.	ID=Os03t0827500-01;Name=Os03t0827500-01;Locus_id=Os03g0827500;RAP-DB Gene Symbol Synonym(s)=OsSPX4%2C SPX4%2C Os-SPX4;RAP-DB Gene Name Synonym(s)=SPX (SYG/PHO81/XPR1) domain gene 4%2C SPX protein 4;CGSNL Gene Symbol=SPX4;CGSNL Gene Name=SPX DOMAIN PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OsSPX4%2C Os-SPX4;Oryzabase Gene Name Synonym(s)=SPX (SYG/PHO81/XPR1) domain gene 4%2C SPX protein 4%2C SPX domain protein 4;Note=SPX family protein%2C Phosphate starvation signaling;Transcript_evidence=AK066364;ORF_evidence=Q10B79;InterPro=SPX%2C N-terminal (IPR004331);NIAS_FLcDNA=J013066K23;Manual Curation=April 7%2C 2014;Literature_PMID=24692424,19566645;Oryzabase=11155;TENOR=Os03t0827500-01;KEGG=Os03t0827500-01
Chr03	irgsp1_rep	five_prime_UTR	34756011	34756130	.	+	.	Parent=Os03t0827500-01
Chr03	irgsp1_rep	CDS	34756131	34756412	.	+	0	Parent=Os03t0827500-01
Chr03	irgsp1_rep	CDS	34757803	34757962	.	+	0	Parent=Os03t0827500-01
Chr03	irgsp1_rep	CDS	34758051	34758571	.	+	2	Parent=Os03t0827500-01
Chr03	irgsp1_rep	three_prime_UTR	34758572	34758745	.	+	.	Parent=Os03t0827500-01
Chr03	irgsp1_rep	mRNA	34756053	34758767	.	+	.	ID=Os03t0827500-02;Name=Os03t0827500-02;Locus_id=Os03g0827500;CGSNL Gene Symbol=SPX4;CGSNL Gene Name=SPX DOMAIN PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OsSPX4%2C Os-SPX4;Oryzabase Gene Name Synonym(s)=SPX (SYG/PHO81/XPR1) domain gene 4%2C SPX protein 4%2C SPX domain protein 4;Note=SPX%2C N-terminal domain containing protein.;Transcript_evidence=AK067674 (DDBJ%2C Best hit);ORF_evidence=Q10B79 (UniProt);InterPro=SPX%2C N-terminal (IPR004331);NIAS_FLcDNA=J013120K12;Oryzabase=11155;TENOR=Os03t0827500-02;KEGG=Os03t0827500-02
Chr03	irgsp1_rep	five_prime_UTR	34756053	34756130	.	+	.	Parent=Os03t0827500-02
Chr03	irgsp1_rep	CDS	34756131	34756227	.	+	0	Parent=Os03t0827500-02
Chr03	irgsp1_rep	CDS	34756357	34756412	.	+	2	Parent=Os03t0827500-02
Chr03	irgsp1_rep	CDS	34757803	34757962	.	+	0	Parent=Os03t0827500-02
Chr03	irgsp1_rep	CDS	34758051	34758571	.	+	2	Parent=Os03t0827500-02
Chr03	irgsp1_rep	three_prime_UTR	34758572	34758767	.	+	.	Parent=Os03t0827500-02
Chr03	irgsp1_rep	mRNA	34759290	34762982	.	-	.	ID=Os03t0827600-02;Name=Os03t0827600-02;Locus_id=Os03g0827600;Note=Similar to F10A16.24 protein.;Transcript_evidence=AK066888 (DDBJ%2C Best hit),AK104819 (DDBJ%2C Best hit);ORF_evidence=Q9M9K7 (UniProt);NIAS_FLcDNA=J013088J18,001-041-A10;TENOR=Os03t0827600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	34762819	34762982	.	-	.	Parent=Os03t0827600-02
Chr03	irgsp1_rep	CDS	34762666	34762818	.	-	0	Parent=Os03t0827600-02
Chr03	irgsp1_rep	CDS	34762040	34762113	.	-	0	Parent=Os03t0827600-02
Chr03	irgsp1_rep	CDS	34760743	34760892	.	-	1	Parent=Os03t0827600-02
Chr03	irgsp1_rep	CDS	34760324	34760609	.	-	1	Parent=Os03t0827600-02
Chr03	irgsp1_rep	CDS	34759935	34760168	.	-	0	Parent=Os03t0827600-02
Chr03	irgsp1_rep	CDS	34759513	34759827	.	-	0	Parent=Os03t0827600-02
Chr03	irgsp1_rep	three_prime_UTR	34759290	34759512	.	-	.	Parent=Os03t0827600-02
Chr03	irgsp1_rep	mRNA	34759326	34762210	.	+	.	ID=Os03t0827650-00;Name=Os03t0827650-00;Locus_id=Os03g0827650;Note=Non-protein coding transcript.;Transcript_evidence=tplb0059f20 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os03t0827650-00
Chr03	irgsp1_rep	exon	34759326	34759827	.	+	.	Parent=Os03t0827650-00
Chr03	irgsp1_rep	exon	34759935	34760167	.	+	.	Parent=Os03t0827650-00
Chr03	irgsp1_rep	exon	34760323	34760608	.	+	.	Parent=Os03t0827650-00
Chr03	irgsp1_rep	exon	34760742	34760889	.	+	.	Parent=Os03t0827650-00
Chr03	irgsp1_rep	exon	34762037	34762210	.	+	.	Parent=Os03t0827650-00
Chr03	irgsp1_rep	mRNA	34765940	34772282	.	+	.	ID=Os03t0827700-01;Name=Os03t0827700-01;Locus_id=Os03g0827700;Oryzabase Gene Symbol Synonym(s)=OsRH3;Oryzabase Gene Name Synonym(s)=RNA helicase 3;Note=Similar to ATP-dependent RNA helicase.;Transcript_evidence=AK065849 (DDBJ%2C Best hit);ORF_evidence=B6SSK6 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026),Molecular Function: zinc ion binding (GO:0008270);InterPro=Helicase%2C C-terminal (IPR001650),Zinc finger%2C CCHC-type (IPR001878),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),GUCT (IPR012562),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=J013043E01;Oryzabase=19125;Expression=AK065849;TENOR=Os03t0827700-01;KEGG=Os03t0827700-01
Chr03	irgsp1_rep	five_prime_UTR	34765940	34766066	.	+	.	Parent=Os03t0827700-01
Chr03	irgsp1_rep	CDS	34766067	34766094	.	+	0	Parent=Os03t0827700-01
Chr03	irgsp1_rep	CDS	34766153	34766412	.	+	2	Parent=Os03t0827700-01
Chr03	irgsp1_rep	CDS	34767417	34767550	.	+	0	Parent=Os03t0827700-01
Chr03	irgsp1_rep	CDS	34767648	34768059	.	+	1	Parent=Os03t0827700-01
Chr03	irgsp1_rep	CDS	34768469	34768567	.	+	0	Parent=Os03t0827700-01
Chr03	irgsp1_rep	CDS	34768873	34769097	.	+	0	Parent=Os03t0827700-01
Chr03	irgsp1_rep	CDS	34769466	34769843	.	+	0	Parent=Os03t0827700-01
Chr03	irgsp1_rep	CDS	34770226	34770369	.	+	0	Parent=Os03t0827700-01
Chr03	irgsp1_rep	CDS	34770646	34770741	.	+	0	Parent=Os03t0827700-01
Chr03	irgsp1_rep	CDS	34771042	34771361	.	+	0	Parent=Os03t0827700-01
Chr03	irgsp1_rep	CDS	34771779	34771854	.	+	1	Parent=Os03t0827700-01
Chr03	irgsp1_rep	three_prime_UTR	34771855	34772282	.	+	.	Parent=Os03t0827700-01
Chr03	irgsp1_rep	mRNA	34768505	34772284	.	+	.	ID=Os03t0827700-02;Name=Os03t0827700-02;Locus_id=Os03g0827700;Oryzabase Gene Symbol Synonym(s)=OsRH3;Oryzabase Gene Name Synonym(s)=RNA helicase 3;Note=Similar to cDNA clone:J013043E01%2C full insert sequence.;Transcript_evidence=AK062046 (DDBJ%2C Best hit);ORF_evidence=B7EBF8 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: zinc ion binding (GO:0008270);InterPro=Helicase%2C C-terminal (IPR001650),Zinc finger%2C CCHC-type (IPR001878),GUCT (IPR012562),Zinc finger%2C CCHC retroviral-type (IPR013084);NIAS_FLcDNA=001-044-A10;Oryzabase=19125;Expression=AK062046;TENOR=Os03t0827700-02;KEGG=Os03t0827700-02
Chr03	irgsp1_rep	CDS	34768505	34768567	.	+	0	Parent=Os03t0827700-02
Chr03	irgsp1_rep	CDS	34768873	34769097	.	+	0	Parent=Os03t0827700-02
Chr03	irgsp1_rep	CDS	34769466	34769843	.	+	0	Parent=Os03t0827700-02
Chr03	irgsp1_rep	CDS	34770226	34770369	.	+	0	Parent=Os03t0827700-02
Chr03	irgsp1_rep	CDS	34770646	34770741	.	+	0	Parent=Os03t0827700-02
Chr03	irgsp1_rep	CDS	34771042	34771361	.	+	0	Parent=Os03t0827700-02
Chr03	irgsp1_rep	CDS	34771779	34771854	.	+	1	Parent=Os03t0827700-02
Chr03	irgsp1_rep	three_prime_UTR	34771855	34772284	.	+	.	Parent=Os03t0827700-02
Chr03	irgsp1_rep	mRNA	34778669	34779467	.	+	.	ID=Os03t0827900-00;Name=Os03t0827900-00;Locus_id=Os03g0827900;Note=Hypothetical conserved gene.;Transcript_evidence=CT835234 (DDBJ%2C Best hit);ORF_evidence=Q8SAX9 (UniProt);TENOR=Os03t0827900-00;KEGG=Os03t0827900-00
Chr03	irgsp1_rep	five_prime_UTR	34778669	34778875	.	+	.	Parent=Os03t0827900-00
Chr03	irgsp1_rep	CDS	34778876	34779253	.	+	0	Parent=Os03t0827900-00
Chr03	irgsp1_rep	three_prime_UTR	34779254	34779467	.	+	.	Parent=Os03t0827900-00
Chr03	irgsp1_rep	mRNA	34785473	34787245	.	+	.	ID=Os03t0828100-01;Name=Os03t0828100-01;Locus_id=Os03g0828100;Note=Similar to 50S ribosomal protein L18%2C chloroplastic.;Transcript_evidence=AK062799 (DDBJ%2C Best hit);ORF_evidence=Q8SAY0 (UniProt);NIAS_FLcDNA=001-107-C11;Expression=AK062799;TENOR=Os03t0828100-01;KEGG=Os03t0828100-01
Chr03	irgsp1_rep	five_prime_UTR	34785473	34785531	.	+	.	Parent=Os03t0828100-01
Chr03	irgsp1_rep	CDS	34785532	34785725	.	+	0	Parent=Os03t0828100-01
Chr03	irgsp1_rep	CDS	34786177	34786228	.	+	1	Parent=Os03t0828100-01
Chr03	irgsp1_rep	three_prime_UTR	34786229	34786316	.	+	.	Parent=Os03t0828100-01
Chr03	irgsp1_rep	three_prime_UTR	34786911	34787245	.	+	.	Parent=Os03t0828100-01
Chr03	irgsp1_rep	mRNA	34785473	34787172	.	+	.	ID=Os03t0828100-02;Name=Os03t0828100-02;Locus_id=Os03g0828100;Note=Similar to 50S ribosomal protein L18.;Transcript_evidence=AK059132 (DDBJ%2C Best hit),AK099043 (DDBJ%2C Best hit);ORF_evidence=Q8SAY0 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L18%2C bacterial (IPR004389),Ribosomal protein L18/L5 (IPR005484);NIAS_FLcDNA=001-022-G10,J013146D01;Expression=AK059132;TENOR=Os03t0828100-02;KEGG=Os03t0828100-02
Chr03	irgsp1_rep	five_prime_UTR	34785473	34785531	.	+	.	Parent=Os03t0828100-02
Chr03	irgsp1_rep	CDS	34785532	34785732	.	+	0	Parent=Os03t0828100-02
Chr03	irgsp1_rep	CDS	34786155	34786316	.	+	0	Parent=Os03t0828100-02
Chr03	irgsp1_rep	CDS	34786911	34787060	.	+	0	Parent=Os03t0828100-02
Chr03	irgsp1_rep	three_prime_UTR	34787061	34787172	.	+	.	Parent=Os03t0828100-02
Chr03	irgsp1_rep	mRNA	34792025	34793842	.	+	.	ID=Os03t0828300-01;Name=Os03t0828300-01;Locus_id=Os03g0828300;Note=Similar to (1-4)-beta-mannan endohydrolase-like protein.;Transcript_evidence=AK107037 (DDBJ%2C Best hit);ORF_evidence=Q0DM48 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=002-121-B10;Expression=AK107037;TENOR=Os03t0828300-01;KEGG=Os03t0828300-01
Chr03	irgsp1_rep	five_prime_UTR	34792025	34792090	.	+	.	Parent=Os03t0828300-01
Chr03	irgsp1_rep	CDS	34792091	34792426	.	+	0	Parent=Os03t0828300-01
Chr03	irgsp1_rep	CDS	34792532	34792765	.	+	0	Parent=Os03t0828300-01
Chr03	irgsp1_rep	three_prime_UTR	34792766	34793842	.	+	.	Parent=Os03t0828300-01
Chr03	irgsp1_rep	mRNA	34798312	34800760	.	+	.	ID=Os03t0828500-01;Name=Os03t0828500-01;Locus_id=Os03g0828500;Note=Similar to (1-4)-beta-mannan endohydrolase precursor (EC 3.2.1.78).;Transcript_evidence=AK106915 (DDBJ%2C Best hit);ORF_evidence=Q10B67 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 5 (IPR001547),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=002-119-A11;Expression=AK106915;TENOR=Os03t0828500-01;KEGG=Os03t0828500-01 (EC:3.2.1.78)
Chr03	irgsp1_rep	five_prime_UTR	34798312	34799086	.	+	.	Parent=Os03t0828500-01
Chr03	irgsp1_rep	CDS	34799087	34799395	.	+	0	Parent=Os03t0828500-01
Chr03	irgsp1_rep	CDS	34799482	34799676	.	+	0	Parent=Os03t0828500-01
Chr03	irgsp1_rep	CDS	34799778	34800659	.	+	0	Parent=Os03t0828500-01
Chr03	irgsp1_rep	three_prime_UTR	34800660	34800760	.	+	.	Parent=Os03t0828500-01
Chr03	irgsp1_rep	mRNA	34805711	34807600	.	+	.	ID=Os03t0828600-00;Name=Os03t0828600-00;Locus_id=Os03g0828600;CGSNL Gene Symbol=CHX13;CGSNL Gene Name=CATION/H+ EXCHANGER  13;Oryzabase Gene Symbol Synonym(s)=OsCHX13;Oryzabase Gene Name Synonym(s)=cation/H+ exchanger  13;Note=Similar to ATCHX19 (CATION/H+ EXCHANGER 19)%3B monovalent cation:proton antiporter/ sodium:hydrogen antiporter.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_188390.2 (RefSeq);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: solute:hydrogen antiporter activity (GO:0015299);InterPro=Cation/H+ exchanger (IPR006153);Oryzabase=22372;TENOR=Os03t0828600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	34805711	34807600	.	+	0	Parent=Os03t0828600-00
Chr03	irgsp1_rep	mRNA	34808955	34809631	.	+	.	ID=Os03t0828701-00;Name=Os03t0828701-00;Locus_id=Os03g0828701;Note=Non-protein coding transcript.;Transcript_evidence=CU405885 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os03t0828701-00
Chr03	irgsp1_rep	exon	34808955	34809102	.	+	.	Parent=Os03t0828701-00
Chr03	irgsp1_rep	exon	34809235	34809330	.	+	.	Parent=Os03t0828701-00
Chr03	irgsp1_rep	exon	34809410	34809631	.	+	.	Parent=Os03t0828701-00
Chr03	irgsp1_rep	mRNA	34810077	34813240	.	+	.	ID=Os03t0828800-01;Name=Os03t0828800-01;Locus_id=Os03g0828800;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK107160 (DDBJ%2C Best hit);ORF_evidence=Q8SAY5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=002-124-F01;Expression=AK107160;TENOR=Os03t0828800-01;KEGG=Os03t0828800-01
Chr03	irgsp1_rep	five_prime_UTR	34810077	34810195	.	+	.	Parent=Os03t0828800-01
Chr03	irgsp1_rep	CDS	34810196	34812589	.	+	0	Parent=Os03t0828800-01
Chr03	irgsp1_rep	three_prime_UTR	34812590	34812608	.	+	.	Parent=Os03t0828800-01
Chr03	irgsp1_rep	three_prime_UTR	34812943	34813240	.	+	.	Parent=Os03t0828800-01
Chr03	irgsp1_rep	mRNA	34817125	34820370	.	-	.	ID=Os03t0829000-01;Name=Os03t0829000-01;Locus_id=Os03g0829000;Note=Fumarylacetoacetase%2C C-terminal-related domain containing protein.;Transcript_evidence=AK071107 (DDBJ%2C Best hit);ORF_evidence=B6TV71 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Fumarylacetoacetase%2C C-terminal (IPR002529),Fumarylacetoacetase%2C C-terminal-related (IPR011234);NIAS_FLcDNA=J023076A13;Expression=AK071107;TENOR=Os03t0829000-01;KEGG=Os03t0829000-01
Chr03	irgsp1_rep	five_prime_UTR	34820294	34820370	.	-	.	Parent=Os03t0829000-01
Chr03	irgsp1_rep	CDS	34820189	34820293	.	-	0	Parent=Os03t0829000-01
Chr03	irgsp1_rep	CDS	34819898	34820072	.	-	0	Parent=Os03t0829000-01
Chr03	irgsp1_rep	CDS	34819126	34819178	.	-	2	Parent=Os03t0829000-01
Chr03	irgsp1_rep	CDS	34818643	34818705	.	-	0	Parent=Os03t0829000-01
Chr03	irgsp1_rep	CDS	34818208	34818258	.	-	0	Parent=Os03t0829000-01
Chr03	irgsp1_rep	CDS	34817987	34818104	.	-	0	Parent=Os03t0829000-01
Chr03	irgsp1_rep	CDS	34817793	34817908	.	-	2	Parent=Os03t0829000-01
Chr03	irgsp1_rep	three_prime_UTR	34817785	34817792	.	-	.	Parent=Os03t0829000-01
Chr03	irgsp1_rep	three_prime_UTR	34817125	34817466	.	-	.	Parent=Os03t0829000-01
Chr03	irgsp1_rep	mRNA	34817616	34820360	.	-	.	ID=Os03t0829000-02;Name=Os03t0829000-02;Locus_id=Os03g0829000;Note=Fumarylacetoacetase%2C C-terminal-related domain containing protein.;Transcript_evidence=AK121596 (DDBJ%2C Best hit);ORF_evidence=B6TV71 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Fumarylacetoacetase%2C C-terminal (IPR002529),Fumarylacetoacetase%2C C-terminal-related (IPR011234);NIAS_FLcDNA=J033039E19;Expression=AK121596;TENOR=Os03t0829000-02;KEGG=Os03t0829000-02
Chr03	irgsp1_rep	five_prime_UTR	34820294	34820360	.	-	.	Parent=Os03t0829000-02
Chr03	irgsp1_rep	CDS	34820189	34820293	.	-	0	Parent=Os03t0829000-02
Chr03	irgsp1_rep	CDS	34819898	34820072	.	-	0	Parent=Os03t0829000-02
Chr03	irgsp1_rep	CDS	34819126	34819178	.	-	2	Parent=Os03t0829000-02
Chr03	irgsp1_rep	CDS	34818643	34818705	.	-	0	Parent=Os03t0829000-02
Chr03	irgsp1_rep	CDS	34818208	34818258	.	-	0	Parent=Os03t0829000-02
Chr03	irgsp1_rep	CDS	34817987	34818104	.	-	0	Parent=Os03t0829000-02
Chr03	irgsp1_rep	CDS	34817793	34817908	.	-	2	Parent=Os03t0829000-02
Chr03	irgsp1_rep	three_prime_UTR	34817616	34817792	.	-	.	Parent=Os03t0829000-02
Chr03	irgsp1_rep	mRNA	34817519	34820337	.	-	.	ID=Os03t0829000-03;Name=Os03t0829000-03;Locus_id=Os03g0829000;Note=Fumarylacetoacetase%2C C-terminal-related domain containing protein.;Transcript_evidence=AK109501 (DDBJ%2C Best hit);ORF_evidence=B6TV71 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Fumarylacetoacetase%2C C-terminal (IPR002529),Fumarylacetoacetase%2C C-terminal-related (IPR011234);NIAS_FLcDNA=001-207-H12;Expression=AK109501;TENOR=Os03t0829000-03;KEGG=Os03t0829000-03
Chr03	irgsp1_rep	five_prime_UTR	34820294	34820337	.	-	.	Parent=Os03t0829000-03
Chr03	irgsp1_rep	CDS	34820189	34820293	.	-	0	Parent=Os03t0829000-03
Chr03	irgsp1_rep	CDS	34819898	34820072	.	-	0	Parent=Os03t0829000-03
Chr03	irgsp1_rep	CDS	34819126	34819178	.	-	2	Parent=Os03t0829000-03
Chr03	irgsp1_rep	CDS	34818643	34818705	.	-	0	Parent=Os03t0829000-03
Chr03	irgsp1_rep	CDS	34818208	34818258	.	-	0	Parent=Os03t0829000-03
Chr03	irgsp1_rep	CDS	34817987	34818104	.	-	0	Parent=Os03t0829000-03
Chr03	irgsp1_rep	CDS	34817793	34817908	.	-	2	Parent=Os03t0829000-03
Chr03	irgsp1_rep	three_prime_UTR	34817519	34817792	.	-	.	Parent=Os03t0829000-03
Chr03	irgsp1_rep	mRNA	34820687	34823529	.	-	.	ID=Os03t0829100-01;Name=Os03t0829100-01;Locus_id=Os03g0829100;Note=Similar to Soluble epoxide hydrolase.;Transcript_evidence=AK072669 (DDBJ%2C Best hit);ORF_evidence=NP_001150215.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Alpha/beta hydrolase fold-1 (IPR000073),Epoxide hydrolase-like (IPR000639);NIAS_FLcDNA=J023138G02;Expression=AK072669;TENOR=Os03t0829100-01;KEGG=Os03t0829100-01
Chr03	irgsp1_rep	five_prime_UTR	34823474	34823529	.	-	.	Parent=Os03t0829100-01
Chr03	irgsp1_rep	CDS	34823171	34823473	.	-	0	Parent=Os03t0829100-01
Chr03	irgsp1_rep	CDS	34822907	34823089	.	-	0	Parent=Os03t0829100-01
Chr03	irgsp1_rep	CDS	34821981	34822213	.	-	0	Parent=Os03t0829100-01
Chr03	irgsp1_rep	CDS	34820885	34821167	.	-	1	Parent=Os03t0829100-01
Chr03	irgsp1_rep	three_prime_UTR	34820687	34820884	.	-	.	Parent=Os03t0829100-01
Chr03	irgsp1_rep	mRNA	34820687	34822027	.	-	.	ID=Os03t0829100-02;Name=Os03t0829100-02;Locus_id=Os03g0829100;Note=Similar to epoxide hydrolase 2.;Transcript_evidence=AK119170 (DDBJ%2C Best hit),AK061700 (DDBJ%2C Best hit);ORF_evidence=NP_001150215.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Epoxide hydrolase-like (IPR000639);NIAS_FLcDNA=001-036-G11,001-037-D07;Expression=AK119170;TENOR=Os03t0829100-02;KEGG=Os03t0829100-02
Chr03	irgsp1_rep	CDS	34821981	34822027	.	-	0	Parent=Os03t0829100-02
Chr03	irgsp1_rep	CDS	34820885	34821167	.	-	1	Parent=Os03t0829100-02
Chr03	irgsp1_rep	three_prime_UTR	34820687	34820884	.	-	.	Parent=Os03t0829100-02
Chr03	irgsp1_rep	mRNA	34825502	34828944	.	-	.	ID=Os03t0829200-01;Name=Os03t0829200-01;Locus_id=Os03g0829200;Note=Similar to Soluble epoxide hydrolase.;Transcript_evidence=AK108175 (DDBJ%2C Best hit);ORF_evidence=B6U9L8 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Epoxide hydrolase-like (IPR000639);NIAS_FLcDNA=002-140-A05;Expression=AK108175;TENOR=Os03t0829200-01;KEGG=Os03t0829200-01
Chr03	irgsp1_rep	five_prime_UTR	34828874	34828944	.	-	.	Parent=Os03t0829200-01
Chr03	irgsp1_rep	CDS	34828559	34828873	.	-	0	Parent=Os03t0829200-01
Chr03	irgsp1_rep	CDS	34827746	34827946	.	-	0	Parent=Os03t0829200-01
Chr03	irgsp1_rep	CDS	34825678	34826178	.	-	0	Parent=Os03t0829200-01
Chr03	irgsp1_rep	three_prime_UTR	34825502	34825677	.	-	.	Parent=Os03t0829200-01
Chr03	irgsp1_rep	mRNA	34825635	34828944	.	-	.	ID=Os03t0829200-02;Name=Os03t0829200-02;Locus_id=Os03g0829200;Note=Similar to epoxide hydrolase 2.;Transcript_evidence=AK100515 (DDBJ%2C Best hit);ORF_evidence=B6U9L8 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Alpha/beta hydrolase fold-1 (IPR000073),Epoxide hydrolase-like (IPR000639);NIAS_FLcDNA=J023100B19;Expression=AK100515;TENOR=Os03t0829200-02;KEGG=Os03t0829200-02 (EC:3.3.2.10)
Chr03	irgsp1_rep	five_prime_UTR	34828874	34828944	.	-	.	Parent=Os03t0829200-02
Chr03	irgsp1_rep	CDS	34828559	34828873	.	-	0	Parent=Os03t0829200-02
Chr03	irgsp1_rep	CDS	34827641	34827946	.	-	0	Parent=Os03t0829200-02
Chr03	irgsp1_rep	three_prime_UTR	34825635	34827640	.	-	.	Parent=Os03t0829200-02
Chr03	irgsp1_rep	mRNA	34826012	34826269	.	+	.	ID=Os03t0829333-00;Name=Os03t0829333-00;Locus_id=Os03g0829333;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os03t0829333-00;KEGG=Os03t0829333-00
Chr03	irgsp1_rep	CDS	34826012	34826269	.	+	0	Parent=Os03t0829333-00
Chr03	irgsp1_rep	mRNA	34826276	34830288	.	+	.	ID=Os03t0829466-01;Name=Os03t0829466-01;Locus_id=Os03g0829466;Note=Conserved hypothetical protein.;Transcript_evidence=AK288971 (DDBJ%2C Best hit);ORF_evidence=Q8SAY8 (UniProt);NIAS_FLcDNA=J090085E12;TENOR=Os03t0829466-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	34826276	34826626	.	+	.	Parent=Os03t0829466-01
Chr03	irgsp1_rep	CDS	34826627	34827076	.	+	0	Parent=Os03t0829466-01
Chr03	irgsp1_rep	three_prime_UTR	34827077	34830288	.	+	.	Parent=Os03t0829466-01
Chr03	irgsp1_rep	mRNA	34851543	34852550	.	-	.	ID=Os03t0829600-01;Name=Os03t0829600-01;Locus_id=Os03g0829600;Note=Pectinesterase inhibitor domain containing protein.;Transcript_evidence=AK119707 (DDBJ%2C Best hit),AK071298 (DDBJ%2C Best hit);ORF_evidence=A2XNM4 (UniProt);GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);NIAS_FLcDNA=002-157-E07,J023084A07;Expression=AK119707;TENOR=Os03t0829600-01;KEGG=Os03t0829600-01
Chr03	irgsp1_rep	five_prime_UTR	34852483	34852550	.	-	.	Parent=Os03t0829600-01
Chr03	irgsp1_rep	CDS	34851991	34852482	.	-	0	Parent=Os03t0829600-01
Chr03	irgsp1_rep	three_prime_UTR	34851543	34851990	.	-	.	Parent=Os03t0829600-01
Chr03	irgsp1_rep	mRNA	34860760	34861520	.	-	.	ID=Os03t0829900-01;Name=Os03t0829900-01;Locus_id=Os03g0829900;RAP-DB Gene Symbol Synonym(s)=OsFWL4;RAP-DB Gene Name Synonym(s)=FW2.2-like 4%2C fruit-weight 2.2-like 4;Oryzabase Gene Symbol Synonym(s)=OsFWL4%2C FWL4;Oryzabase Gene Name Synonym(s)=FW2.2-like 4%2C fruit-weight 2.2-like 4;Note=Homolog of tomato fruit-weight 2.2%2C "fruit-weight 2.2-like" gene family member%2C Regulation of tiller number and plant yield%2C Translocation of cadmium from roots to shoots;Transcript_evidence=HM008661 (maize);ORF_evidence=Q850Y3;InterPro=PLAC8 motif-containing protein (IPR006461);Manual Curation=January 30%2C 2020;Literature_PMID=31991936,29453663;Oryzabase=13473;TENOR=Os03t0829900-00
Chr03	irgsp1_rep	five_prime_UTR	34861423	34861520	.	-	.	Parent=Os03t0829900-01
Chr03	irgsp1_rep	CDS	34861356	34861422	.	-	0	Parent=Os03t0829900-01
Chr03	irgsp1_rep	CDS	34860760	34861103	.	-	2	Parent=Os03t0829900-01
Chr03	irgsp1_rep	mRNA	34870676	34871354	.	-	.	ID=Os03t0830200-00;Name=Os03t0830200-00;Locus_id=Os03g0830200;Oryzabase Gene Symbol Synonym(s)=OsFWL6%2C FWL6;Oryzabase Gene Name Synonym(s)=FW2.2-like 6%2C fruit-weight 2.2-like 6;Note=Protein of unknown function Cys-rich family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001151128.1 (RefSeq);InterPro=Uncharacterised protein family Cys-rich (IPR006461);Oryzabase=13475;TENOR=Os03t0830200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	34871258	34871354	.	-	0	Parent=Os03t0830200-00
Chr03	irgsp1_rep	CDS	34870676	34871031	.	-	2	Parent=Os03t0830200-00
Chr03	irgsp1_rep	mRNA	34873910	34874544	.	-	.	ID=Os03t0830300-00;Name=Os03t0830300-00;Locus_id=Os03g0830300;Oryzabase Gene Symbol Synonym(s)=OsFWL8%2C FWL8;Oryzabase Gene Name Synonym(s)=FW2.2-like 8%2C fruit-weight 2.2-like 8;Note=Similar to PGPS/D12.;Transcript_evidence=AK373762 (DDBJ);ORF_evidence=NP_001151128.1 (RefSeq);InterPro=Uncharacterised protein family Cys-rich (IPR006461);Oryzabase=13477;TENOR=Os03t0830300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	34874541	34874544	.	-	.	Parent=Os03t0830300-00
Chr03	irgsp1_rep	CDS	34874444	34874540	.	-	0	Parent=Os03t0830300-00
Chr03	irgsp1_rep	CDS	34873910	34874313	.	-	2	Parent=Os03t0830300-00
Chr03	irgsp1_rep	mRNA	34878043	34878992	.	-	.	ID=Os03t0830400-01;Name=Os03t0830400-01;Locus_id=Os03g0830400;Note=PGPS/D12.;Transcript_evidence=AK241640 (DDBJ%2C Best hit);ORF_evidence=NP_001147615.1 (RefSeq);InterPro=Uncharacterised protein family Cys-rich (IPR006461);NIAS_FLcDNA=J065189C09;TENOR=Os03t0830400-01;KEGG=Os03t0830400-01
Chr03	irgsp1_rep	five_prime_UTR	34878924	34878992	.	-	.	Parent=Os03t0830400-01
Chr03	irgsp1_rep	CDS	34878827	34878923	.	-	0	Parent=Os03t0830400-01
Chr03	irgsp1_rep	CDS	34878366	34878715	.	-	2	Parent=Os03t0830400-01
Chr03	irgsp1_rep	three_prime_UTR	34878043	34878365	.	-	.	Parent=Os03t0830400-01
Chr03	irgsp1_rep	mRNA	34883520	34884578	.	-	.	ID=Os03t0830500-01;Name=Os03t0830500-01;Locus_id=Os03g0830500;Oryzabase Gene Symbol Synonym(s)=OsFWL7%2C FWL7;Oryzabase Gene Name Synonym(s)=FW2.2-like 7%2C fruit-weight 2.2-like 7;Note=Similar to PGPS/D12.;Transcript_evidence=AK071173 (DDBJ%2C Best hit);ORF_evidence=D9HP26 (UniProt);InterPro=Uncharacterised protein family Cys-rich (IPR006461);NIAS_FLcDNA=J023082F07;Oryzabase=13476;Expression=AK071173;TENOR=Os03t0830500-01;KEGG=Os03t0830500-01
Chr03	irgsp1_rep	five_prime_UTR	34884471	34884578	.	-	.	Parent=Os03t0830500-01
Chr03	irgsp1_rep	CDS	34884404	34884470	.	-	0	Parent=Os03t0830500-01
Chr03	irgsp1_rep	CDS	34883811	34884169	.	-	2	Parent=Os03t0830500-01
Chr03	irgsp1_rep	three_prime_UTR	34883520	34883810	.	-	.	Parent=Os03t0830500-01
Chr03	irgsp1_rep	mRNA	34891223	34892049	.	-	.	ID=Os03t0830600-01;Name=Os03t0830600-01;Locus_id=Os03g0830600;Note=Pectinesterase inhibitor domain containing protein.;Transcript_evidence=AK107563 (DDBJ%2C Best hit);ORF_evidence=NP_001149632.1 (RefSeq);GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);NIAS_FLcDNA=002-130-C02;Expression=AK107563;TENOR=Os03t0830600-01;KEGG=Os03t0830600-01
Chr03	irgsp1_rep	five_prime_UTR	34892040	34892049	.	-	.	Parent=Os03t0830600-01
Chr03	irgsp1_rep	CDS	34891434	34892039	.	-	0	Parent=Os03t0830600-01
Chr03	irgsp1_rep	three_prime_UTR	34891223	34891433	.	-	.	Parent=Os03t0830600-01
Chr03	irgsp1_rep	mRNA	34895427	34896125	.	-	.	ID=Os03t0830800-01;Name=Os03t0830800-01;Locus_id=Os03g0830800;Note=Pectinesterase inhibitor domain containing protein.;Transcript_evidence=AK109894 (DDBJ%2C Best hit);ORF_evidence=A2XNN2 (UniProt);GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);NIAS_FLcDNA=002-149-E11;Expression=AK109894;TENOR=Os03t0830800-01;KEGG=Os03t0830800-01
Chr03	irgsp1_rep	five_prime_UTR	34896096	34896125	.	-	.	Parent=Os03t0830800-01
Chr03	irgsp1_rep	CDS	34895550	34896095	.	-	0	Parent=Os03t0830800-01
Chr03	irgsp1_rep	three_prime_UTR	34895427	34895549	.	-	.	Parent=Os03t0830800-01
Chr03	irgsp1_rep	mRNA	34896339	34900928	.	-	.	ID=Os03t0830900-01;Name=Os03t0830900-01;Locus_id=Os03g0830900;Note=Lipase%2C class 3 family protein.;Transcript_evidence=AK066720 (DDBJ%2C Best hit);ORF_evidence=Q10B43 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921);NIAS_FLcDNA=J013087E11;Expression=AK066720;TENOR=Os03t0830900-01;KEGG=Os03t0830900-01
Chr03	irgsp1_rep	five_prime_UTR	34900844	34900928	.	-	.	Parent=Os03t0830900-01
Chr03	irgsp1_rep	CDS	34900505	34900843	.	-	0	Parent=Os03t0830900-01
Chr03	irgsp1_rep	CDS	34899225	34899416	.	-	0	Parent=Os03t0830900-01
Chr03	irgsp1_rep	CDS	34898841	34899113	.	-	0	Parent=Os03t0830900-01
Chr03	irgsp1_rep	CDS	34898505	34898607	.	-	0	Parent=Os03t0830900-01
Chr03	irgsp1_rep	CDS	34897968	34898086	.	-	2	Parent=Os03t0830900-01
Chr03	irgsp1_rep	CDS	34897501	34897656	.	-	0	Parent=Os03t0830900-01
Chr03	irgsp1_rep	CDS	34896395	34896997	.	-	0	Parent=Os03t0830900-01
Chr03	irgsp1_rep	three_prime_UTR	34896339	34896394	.	-	.	Parent=Os03t0830900-01
Chr03	irgsp1_rep	mRNA	34898526	34900604	.	+	.	ID=Os03t0830950-00;Name=Os03t0830950-00;Locus_id=Os03g0830950;Note=Hypothetical gene.;Transcript_evidence=BT084199 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0830950-00;KEGG=Os03t0830950-00
Chr03	irgsp1_rep	five_prime_UTR	34898526	34898605	.	+	.	Parent=Os03t0830950-00
Chr03	irgsp1_rep	five_prime_UTR	34898839	34899103	.	+	.	Parent=Os03t0830950-00
Chr03	irgsp1_rep	five_prime_UTR	34899211	34899292	.	+	.	Parent=Os03t0830950-00
Chr03	irgsp1_rep	CDS	34899293	34899474	.	+	0	Parent=Os03t0830950-00
Chr03	irgsp1_rep	CDS	34899920	34900001	.	+	1	Parent=Os03t0830950-00
Chr03	irgsp1_rep	three_prime_UTR	34900002	34900069	.	+	.	Parent=Os03t0830950-00
Chr03	irgsp1_rep	three_prime_UTR	34900466	34900604	.	+	.	Parent=Os03t0830950-00
Chr03	irgsp1_rep	mRNA	34904763	34906089	.	+	.	ID=Os03t0831000-00;Name=Os03t0831000-00;Locus_id=Os03g0831000;Oryzabase Gene Symbol Synonym(s)=OsDjC37;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C37;Note=Hypothetical conserved gene.;Transcript_evidence=EU956378 (DDBJ);ORF_evidence=NP_001147724.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Heat shock protein DnaJ%2C conserved site (IPR018253);Oryzabase=12194;TENOR=Os03t0831000-00;KEGG=Os03t0831000-00
Chr03	irgsp1_rep	five_prime_UTR	34904763	34904863	.	+	.	Parent=Os03t0831000-00
Chr03	irgsp1_rep	CDS	34904864	34905056	.	+	0	Parent=Os03t0831000-00
Chr03	irgsp1_rep	CDS	34905141	34905208	.	+	2	Parent=Os03t0831000-00
Chr03	irgsp1_rep	CDS	34905568	34906089	.	+	0	Parent=Os03t0831000-00
Chr03	irgsp1_rep	mRNA	34906648	34912027	.	-	.	ID=Os03t0831100-01;Name=Os03t0831100-01;Locus_id=Os03g0831100;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK103115 (DDBJ%2C Best hit);ORF_evidence=B8AMR0 (UniProt);GO=Molecular Function: RNA binding (GO:0003723),Molecular Function: binding (GO:0005488);InterPro=Pumilio RNA-binding repeat (IPR001313),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033119F15;Expression=AK103115;TENOR=Os03t0831100-01;KEGG=Os03t0831100-01
Chr03	irgsp1_rep	five_prime_UTR	34911962	34912027	.	-	.	Parent=Os03t0831100-01
Chr03	irgsp1_rep	CDS	34911758	34911961	.	-	0	Parent=Os03t0831100-01
Chr03	irgsp1_rep	CDS	34911601	34911654	.	-	0	Parent=Os03t0831100-01
Chr03	irgsp1_rep	CDS	34911052	34911113	.	-	0	Parent=Os03t0831100-01
Chr03	irgsp1_rep	CDS	34910878	34910959	.	-	1	Parent=Os03t0831100-01
Chr03	irgsp1_rep	CDS	34910655	34910778	.	-	0	Parent=Os03t0831100-01
Chr03	irgsp1_rep	CDS	34910479	34910562	.	-	2	Parent=Os03t0831100-01
Chr03	irgsp1_rep	CDS	34910190	34910304	.	-	2	Parent=Os03t0831100-01
Chr03	irgsp1_rep	CDS	34909878	34910028	.	-	1	Parent=Os03t0831100-01
Chr03	irgsp1_rep	CDS	34909550	34909762	.	-	0	Parent=Os03t0831100-01
Chr03	irgsp1_rep	CDS	34909276	34909347	.	-	0	Parent=Os03t0831100-01
Chr03	irgsp1_rep	CDS	34909064	34909114	.	-	0	Parent=Os03t0831100-01
Chr03	irgsp1_rep	CDS	34908915	34908965	.	-	0	Parent=Os03t0831100-01
Chr03	irgsp1_rep	CDS	34908723	34908831	.	-	0	Parent=Os03t0831100-01
Chr03	irgsp1_rep	CDS	34908481	34908644	.	-	2	Parent=Os03t0831100-01
Chr03	irgsp1_rep	CDS	34907871	34907945	.	-	0	Parent=Os03t0831100-01
Chr03	irgsp1_rep	CDS	34907264	34907502	.	-	0	Parent=Os03t0831100-01
Chr03	irgsp1_rep	CDS	34906881	34907010	.	-	1	Parent=Os03t0831100-01
Chr03	irgsp1_rep	three_prime_UTR	34906648	34906880	.	-	.	Parent=Os03t0831100-01
Chr03	irgsp1_rep	mRNA	34913512	34914842	.	+	.	ID=Os03t0831200-01;Name=Os03t0831200-01;Locus_id=Os03g0831200;RAP-DB Gene Symbol Synonym(s)=GATA12%2C OsGATA12;RAP-DB Gene Name Synonym(s)=GATA TRANSCRIPTION FACTOR 12%2C GATA transcription factor 12;CGSNL Gene Symbol=GATA12;CGSNL Gene Name=GATA TRANSCRIPTION FACTOR 12;Oryzabase Gene Symbol Synonym(s)=OsGATA12;Oryzabase Gene Name Synonym(s)=GATA transcription factor 12%2C GATA factor 12;Note=GATA transcription factor%2C Zinc finger transcription factor%2C Regulation of chlorophyll content and senescence;Transcript_evidence=AK073709;ORF_evidence=Q850Z5;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Zinc finger%2C NHR/GATA-type (IPR013088),Zinc finger%2C GATA-type (IPR000679);NIAS_FLcDNA=J033058P14;Manual Curation=April 10%2C 2017;Literature_PMID=28342018;Oryzabase=20496;Expression=AK073709;TENOR=Os03t0831200-01;KEGG=Os03t0831200-01
Chr03	irgsp1_rep	five_prime_UTR	34913512	34913807	.	+	.	Parent=Os03t0831200-01
Chr03	irgsp1_rep	CDS	34913808	34913831	.	+	0	Parent=Os03t0831200-01
Chr03	irgsp1_rep	CDS	34913930	34914043	.	+	0	Parent=Os03t0831200-01
Chr03	irgsp1_rep	CDS	34914164	34914436	.	+	0	Parent=Os03t0831200-01
Chr03	irgsp1_rep	three_prime_UTR	34914437	34914842	.	+	.	Parent=Os03t0831200-01
Chr03	irgsp1_rep	mRNA	34913515	34914844	.	+	.	ID=Os03t0831200-02;Name=Os03t0831200-02;Locus_id=Os03g0831200;RAP-DB Gene Symbol Synonym(s)=GATA12;RAP-DB Gene Name Synonym(s)=GATA TRANSCRIPTION FACTOR 12;CGSNL Gene Symbol=GATA12;CGSNL Gene Name=GATA TRANSCRIPTION FACTOR 12;Oryzabase Gene Symbol Synonym(s)=OsGATA12;Oryzabase Gene Name Synonym(s)=GATA transcription factor 12%2C GATA factor 12;Note=Hypothetical conserved gene.;Transcript_evidence=AK064036 (DDBJ%2C Best hit);ORF_evidence=A2XNM3 (UniProt);NIAS_FLcDNA=001-125-C08;Manual Curation=April 10%2C 2017;Oryzabase=20496;Expression=AK064036;TENOR=Os03t0831200-02;KEGG=Os03t0831200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	34913515	34913880	.	+	.	Parent=Os03t0831200-02
Chr03	irgsp1_rep	CDS	34913881	34914465	.	+	0	Parent=Os03t0831200-02
Chr03	irgsp1_rep	three_prime_UTR	34914466	34914844	.	+	.	Parent=Os03t0831200-02
Chr03	irgsp1_rep	mRNA	34918616	34922560	.	+	.	ID=Os03t0831300-01;Name=Os03t0831300-01;Locus_id=Os03g0831300;Note=Protein of unknown function DUF789 family protein.;Transcript_evidence=AK073782 (DDBJ%2C Best hit);ORF_evidence=Q850Z6 (UniProt);InterPro=Protein of unknown function DUF789 (IPR008507);NIAS_FLcDNA=J033068O12;Expression=AK073782;TENOR=Os03t0831300-01;KEGG=Os03t0831300-01
Chr03	irgsp1_rep	five_prime_UTR	34918616	34918803	.	+	.	Parent=Os03t0831300-01
Chr03	irgsp1_rep	CDS	34918804	34919214	.	+	0	Parent=Os03t0831300-01
Chr03	irgsp1_rep	CDS	34920085	34920299	.	+	0	Parent=Os03t0831300-01
Chr03	irgsp1_rep	CDS	34920956	34921181	.	+	1	Parent=Os03t0831300-01
Chr03	irgsp1_rep	CDS	34921261	34921346	.	+	0	Parent=Os03t0831300-01
Chr03	irgsp1_rep	CDS	34921690	34921690	.	+	1	Parent=Os03t0831300-01
Chr03	irgsp1_rep	three_prime_UTR	34921691	34921935	.	+	.	Parent=Os03t0831300-01
Chr03	irgsp1_rep	three_prime_UTR	34922046	34922560	.	+	.	Parent=Os03t0831300-01
Chr03	irgsp1_rep	mRNA	34923294	34923817	.	+	.	ID=Os03t0831400-01;Name=Os03t0831400-01;Locus_id=Os03g0831400;Note=Beta tubulin%2C autoregulation binding site domain containing protein.;Transcript_evidence=AK071202 (DDBJ%2C Best hit);ORF_evidence=A2XNN8 (UniProt);InterPro=Protein of unknown function DUF3511 (IPR021899);NIAS_FLcDNA=J023085A04;Expression=AK071202;TENOR=Os03t0831400-01;KEGG=Os03t0831400-01
Chr03	irgsp1_rep	five_prime_UTR	34923294	34923339	.	+	.	Parent=Os03t0831400-01
Chr03	irgsp1_rep	CDS	34923340	34923564	.	+	0	Parent=Os03t0831400-01
Chr03	irgsp1_rep	three_prime_UTR	34923565	34923817	.	+	.	Parent=Os03t0831400-01
Chr03	irgsp1_rep	mRNA	34923939	34926673	.	-	.	ID=Os03t0831500-01;Name=Os03t0831500-01;Locus_id=Os03g0831500;CGSNL Gene Symbol=AIRS;CGSNL Gene Name=AIR SYNTHETASE;Oryzabase Gene Symbol Synonym(s)=OsAIRS;Oryzabase Gene Name Synonym(s)=AIR synthetase;Note=Similar to Phosphoribosylformylglycinamidine cyclo-ligase%2C chloroplast/mitochondrial precursor (EC 6.3.3.1) (AIRS) (Phosphoribosyl-aminoimidazole synthetase) (AIR synthase) (VUpur5).;Transcript_evidence=AK101211 (DDBJ%2C Best hit);ORF_evidence=B8AMR2 (UniProt);GO=Biological Process: 'de novo' IMP biosynthetic process (GO:0006189),Cellular Component: cytoplasm (GO:0005737),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphoribosylformylglycinamidine cyclo-ligase activity (GO:0004641);InterPro=AIR synthase-related protein (IPR000728),Phosphoribosylformylglycinamidine cyclo-ligase (IPR004733),AIR synthase-related protein%2C C-terminal (IPR010918),PurM%2C N-terminal-like (IPR016188);NIAS_FLcDNA=J033031B01;Oryzabase=22926;Expression=AK101211;TENOR=Os03t0831500-01;KEGG=Os03t0831500-01 (EC:6.3.3.1)
Chr03	irgsp1_rep	five_prime_UTR	34926632	34926673	.	-	.	Parent=Os03t0831500-01
Chr03	irgsp1_rep	CDS	34926307	34926631	.	-	0	Parent=Os03t0831500-01
Chr03	irgsp1_rep	CDS	34926061	34926155	.	-	2	Parent=Os03t0831500-01
Chr03	irgsp1_rep	CDS	34925875	34925976	.	-	0	Parent=Os03t0831500-01
Chr03	irgsp1_rep	CDS	34925695	34925754	.	-	0	Parent=Os03t0831500-01
Chr03	irgsp1_rep	CDS	34925107	34925279	.	-	0	Parent=Os03t0831500-01
Chr03	irgsp1_rep	CDS	34924849	34924960	.	-	1	Parent=Os03t0831500-01
Chr03	irgsp1_rep	CDS	34924612	34924770	.	-	0	Parent=Os03t0831500-01
Chr03	irgsp1_rep	CDS	34924159	34924329	.	-	0	Parent=Os03t0831500-01
Chr03	irgsp1_rep	three_prime_UTR	34923939	34924158	.	-	.	Parent=Os03t0831500-01
Chr03	irgsp1_rep	mRNA	34927256	34928300	.	+	.	ID=Os03t0831550-00;Name=Os03t0831550-00;Locus_id=Os03g0831550;Note=Conserved hypothetical protein.;Transcript_evidence=AK062544 (DDBJ%2C Secondary hit);ORF_evidence=B9FBE6 (UniProt);TENOR=Os03t0831550-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	34927256	34927617	.	+	.	Parent=Os03t0831550-00
Chr03	irgsp1_rep	CDS	34927618	34927983	.	+	0	Parent=Os03t0831550-00
Chr03	irgsp1_rep	three_prime_UTR	34927984	34928300	.	+	.	Parent=Os03t0831550-00
Chr03	irgsp1_rep	mRNA	34932352	34937347	.	+	.	ID=Os03t0831700-01;Name=Os03t0831700-01;Locus_id=Os03g0831700;Note=Conserved hypothetical protein.;Transcript_evidence=AK066131 (DDBJ%2C Best hit);ORF_evidence=A2XNP1 (UniProt);NIAS_FLcDNA=J013052G24;Expression=AK066131;TENOR=Os03t0831700-01;KEGG=Os03t0831700-01
Chr03	irgsp1_rep	five_prime_UTR	34932352	34932606	.	+	.	Parent=Os03t0831700-01
Chr03	irgsp1_rep	five_prime_UTR	34933090	34933109	.	+	.	Parent=Os03t0831700-01
Chr03	irgsp1_rep	CDS	34933110	34933224	.	+	0	Parent=Os03t0831700-01
Chr03	irgsp1_rep	CDS	34933333	34933391	.	+	2	Parent=Os03t0831700-01
Chr03	irgsp1_rep	CDS	34933478	34935136	.	+	0	Parent=Os03t0831700-01
Chr03	irgsp1_rep	CDS	34936235	34936376	.	+	0	Parent=Os03t0831700-01
Chr03	irgsp1_rep	CDS	34936459	34937144	.	+	2	Parent=Os03t0831700-01
Chr03	irgsp1_rep	three_prime_UTR	34937145	34937347	.	+	.	Parent=Os03t0831700-01
Chr03	irgsp1_rep	mRNA	34934140	34937297	.	+	.	ID=Os03t0831700-02;Name=Os03t0831700-02;Locus_id=Os03g0831700;Note=Hypothetical conserved gene.;Transcript_evidence=AK065839 (DDBJ%2C Best hit);ORF_evidence=A2XNP1 (UniProt);NIAS_FLcDNA=J013038J01;Expression=AK065839;TENOR=Os03t0831700-02;KEGG=Os03t0831700-02
Chr03	irgsp1_rep	five_prime_UTR	34934140	34934140	.	+	.	Parent=Os03t0831700-02
Chr03	irgsp1_rep	CDS	34934141	34935136	.	+	0	Parent=Os03t0831700-02
Chr03	irgsp1_rep	CDS	34936235	34936376	.	+	0	Parent=Os03t0831700-02
Chr03	irgsp1_rep	CDS	34936459	34936652	.	+	2	Parent=Os03t0831700-02
Chr03	irgsp1_rep	CDS	34936787	34936930	.	+	0	Parent=Os03t0831700-02
Chr03	irgsp1_rep	three_prime_UTR	34936931	34937297	.	+	.	Parent=Os03t0831700-02
Chr03	irgsp1_rep	mRNA	34939314	34941365	.	+	.	ID=Os03t0831800-01;Name=Os03t0831800-01;Locus_id=Os03g0831800;Oryzabase Gene Symbol Synonym(s)=OsWD40-95;Note=Similar to Sec13p.;Transcript_evidence=AK103569 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J033132M13;Oryzabase=10776;Expression=AK103569;TENOR=Os03t0831800-01;KEGG=Os03t0831800-01
Chr03	irgsp1_rep	five_prime_UTR	34939314	34939419	.	+	.	Parent=Os03t0831800-01
Chr03	irgsp1_rep	five_prime_UTR	34940105	34940151	.	+	.	Parent=Os03t0831800-01
Chr03	irgsp1_rep	CDS	34940152	34941057	.	+	0	Parent=Os03t0831800-01
Chr03	irgsp1_rep	three_prime_UTR	34941058	34941365	.	+	.	Parent=Os03t0831800-01
Chr03	irgsp1_rep	mRNA	34941643	34944635	.	+	.	ID=Os03t0831900-01;Name=Os03t0831900-01;Locus_id=Os03g0831900;Note=Zinc finger%2C U1-type domain containing protein.;Transcript_evidence=AK059869 (DDBJ%2C Best hit);ORF_evidence=NP_566257.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C U1-type (IPR003604),Zinc finger%2C double-stranded RNA binding (IPR022755);NIAS_FLcDNA=006-207-E08;Expression=AK059869;TENOR=Os03t0831900-01;KEGG=Os03t0831900-01
Chr03	irgsp1_rep	five_prime_UTR	34941643	34941887	.	+	.	Parent=Os03t0831900-01
Chr03	irgsp1_rep	five_prime_UTR	34942211	34942241	.	+	.	Parent=Os03t0831900-01
Chr03	irgsp1_rep	CDS	34942242	34942253	.	+	0	Parent=Os03t0831900-01
Chr03	irgsp1_rep	CDS	34942343	34942429	.	+	0	Parent=Os03t0831900-01
Chr03	irgsp1_rep	CDS	34942543	34942564	.	+	0	Parent=Os03t0831900-01
Chr03	irgsp1_rep	CDS	34942657	34942739	.	+	2	Parent=Os03t0831900-01
Chr03	irgsp1_rep	CDS	34942953	34942985	.	+	0	Parent=Os03t0831900-01
Chr03	irgsp1_rep	CDS	34943282	34943360	.	+	0	Parent=Os03t0831900-01
Chr03	irgsp1_rep	CDS	34943456	34943508	.	+	2	Parent=Os03t0831900-01
Chr03	irgsp1_rep	CDS	34943745	34943805	.	+	0	Parent=Os03t0831900-01
Chr03	irgsp1_rep	CDS	34943982	34944064	.	+	2	Parent=Os03t0831900-01
Chr03	irgsp1_rep	CDS	34944232	34944327	.	+	0	Parent=Os03t0831900-01
Chr03	irgsp1_rep	three_prime_UTR	34944328	34944635	.	+	.	Parent=Os03t0831900-01
Chr03	irgsp1_rep	mRNA	34952200	34955905	.	-	.	ID=Os03t0832200-01;Name=Os03t0832200-01;Locus_id=Os03g0832200;Oryzabase Gene Symbol Synonym(s)=CRT%2C OsCRT;Oryzabase Gene Name Synonym(s)=calreticulin;Note=Similar to Calcium-binding protein precursor (Calreticulin).;Transcript_evidence=AK070712 (DDBJ%2C Best hit);ORF_evidence=NP_001105712.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Cellular Component: endoplasmic reticulum (GO:0005783),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Calreticulin/calnexin (IPR001580),Concanavalin A-like lectin/glucanase (IPR008985),Calreticulin/calnexin%2C P (IPR009033),Calreticulin (IPR009169),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Calreticulin/calnexin%2C conserved site (IPR018124);NIAS_FLcDNA=J023060M04;Oryzabase=10219;Expression=AK070712;TENOR=Os03t0832200-01;KEGG=Os03t0832200-01
Chr03	irgsp1_rep	five_prime_UTR	34955802	34955905	.	-	.	Parent=Os03t0832200-01
Chr03	irgsp1_rep	CDS	34955699	34955801	.	-	0	Parent=Os03t0832200-01
Chr03	irgsp1_rep	CDS	34954982	34955089	.	-	2	Parent=Os03t0832200-01
Chr03	irgsp1_rep	CDS	34954691	34954883	.	-	2	Parent=Os03t0832200-01
Chr03	irgsp1_rep	CDS	34954339	34954597	.	-	1	Parent=Os03t0832200-01
Chr03	irgsp1_rep	CDS	34954174	34954230	.	-	0	Parent=Os03t0832200-01
Chr03	irgsp1_rep	CDS	34953818	34953865	.	-	0	Parent=Os03t0832200-01
Chr03	irgsp1_rep	CDS	34953597	34953683	.	-	0	Parent=Os03t0832200-01
Chr03	irgsp1_rep	CDS	34953447	34953504	.	-	0	Parent=Os03t0832200-01
Chr03	irgsp1_rep	CDS	34953281	34953348	.	-	2	Parent=Os03t0832200-01
Chr03	irgsp1_rep	CDS	34953105	34953200	.	-	0	Parent=Os03t0832200-01
Chr03	irgsp1_rep	CDS	34952968	34953015	.	-	0	Parent=Os03t0832200-01
Chr03	irgsp1_rep	CDS	34952779	34952823	.	-	0	Parent=Os03t0832200-01
Chr03	irgsp1_rep	CDS	34952546	34952704	.	-	0	Parent=Os03t0832200-01
Chr03	irgsp1_rep	three_prime_UTR	34952200	34952545	.	-	.	Parent=Os03t0832200-01
Chr03	irgsp1_rep	mRNA	34957024	34959386	.	-	.	ID=Os03t0832300-01;Name=Os03t0832300-01;Locus_id=Os03g0832300;Note=Similar to huntingtin interacting protein K.;Transcript_evidence=AK101289 (DDBJ%2C Best hit);ORF_evidence=NP_001148118.1 (RefSeq);NIAS_FLcDNA=J033033G01;Expression=AK101289;TENOR=Os03t0832300-01;KEGG=Os03t0832300-01
Chr03	irgsp1_rep	five_prime_UTR	34959311	34959386	.	-	.	Parent=Os03t0832300-01
Chr03	irgsp1_rep	CDS	34959131	34959310	.	-	0	Parent=Os03t0832300-01
Chr03	irgsp1_rep	CDS	34958153	34958208	.	-	0	Parent=Os03t0832300-01
Chr03	irgsp1_rep	CDS	34957408	34957474	.	-	1	Parent=Os03t0832300-01
Chr03	irgsp1_rep	CDS	34957248	34957328	.	-	0	Parent=Os03t0832300-01
Chr03	irgsp1_rep	three_prime_UTR	34957024	34957247	.	-	.	Parent=Os03t0832300-01
Chr03	irgsp1_rep	mRNA	34960967	34964122	.	+	.	ID=Os03t0832400-01;Name=Os03t0832400-01;Locus_id=Os03g0832400;Oryzabase Gene Symbol Synonym(s)=OsPP2C36%2C PP2C36%2C OsPP60;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C36%2C protein phosphatase 2C 36%2C protein phosphatase 60;Note=Similar to Protein phosphatase 2C-like protein.;Transcript_evidence=AK120748 (DDBJ%2C Best hit);ORF_evidence=B4G0F7 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J023004O05;Oryzabase=17910;Expression=AK120748;TENOR=Os03t0832400-01;KEGG=Os03t0832400-01
Chr03	irgsp1_rep	five_prime_UTR	34960967	34961091	.	+	.	Parent=Os03t0832400-01
Chr03	irgsp1_rep	CDS	34961092	34961434	.	+	0	Parent=Os03t0832400-01
Chr03	irgsp1_rep	CDS	34961513	34961880	.	+	2	Parent=Os03t0832400-01
Chr03	irgsp1_rep	CDS	34961984	34962220	.	+	0	Parent=Os03t0832400-01
Chr03	irgsp1_rep	CDS	34963591	34963803	.	+	0	Parent=Os03t0832400-01
Chr03	irgsp1_rep	three_prime_UTR	34963804	34964122	.	+	.	Parent=Os03t0832400-01
Chr03	irgsp1_rep	mRNA	34965492	34972691	.	+	.	ID=Os03t0832500-01;Name=Os03t0832500-01;Locus_id=Os03g0832500;Note=Nucleic acid-binding%2C OB-fold domain containing protein.;Transcript_evidence=AK106890 (DDBJ%2C Best hit);ORF_evidence=B8AMR6 (UniProt);InterPro=Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=002-118-G05;Expression=AK106890;TENOR=Os03t0832500-01;KEGG=Os03t0832500-01
Chr03	irgsp1_rep	five_prime_UTR	34965492	34965571	.	+	.	Parent=Os03t0832500-01
Chr03	irgsp1_rep	CDS	34965572	34965802	.	+	0	Parent=Os03t0832500-01
Chr03	irgsp1_rep	CDS	34966212	34966398	.	+	0	Parent=Os03t0832500-01
Chr03	irgsp1_rep	CDS	34966770	34966842	.	+	2	Parent=Os03t0832500-01
Chr03	irgsp1_rep	CDS	34966959	34967103	.	+	1	Parent=Os03t0832500-01
Chr03	irgsp1_rep	CDS	34967484	34967593	.	+	0	Parent=Os03t0832500-01
Chr03	irgsp1_rep	CDS	34967941	34968072	.	+	1	Parent=Os03t0832500-01
Chr03	irgsp1_rep	CDS	34968142	34968283	.	+	1	Parent=Os03t0832500-01
Chr03	irgsp1_rep	CDS	34968359	34968493	.	+	0	Parent=Os03t0832500-01
Chr03	irgsp1_rep	CDS	34970092	34970249	.	+	0	Parent=Os03t0832500-01
Chr03	irgsp1_rep	CDS	34971141	34971215	.	+	1	Parent=Os03t0832500-01
Chr03	irgsp1_rep	CDS	34971319	34971457	.	+	1	Parent=Os03t0832500-01
Chr03	irgsp1_rep	CDS	34971652	34971921	.	+	0	Parent=Os03t0832500-01
Chr03	irgsp1_rep	CDS	34972281	34972427	.	+	0	Parent=Os03t0832500-01
Chr03	irgsp1_rep	three_prime_UTR	34972428	34972691	.	+	.	Parent=Os03t0832500-01
Chr03	irgsp1_rep	mRNA	34974719	34980179	.	+	.	ID=Os03t0832600-01;Name=Os03t0832600-01;Locus_id=Os03g0832600;Note=Similar to Galactokinase (EC 2.7.1.6) (Galactose kinase).;Transcript_evidence=AK120137 (DDBJ%2C Best hit);ORF_evidence=B6TZ40 (UniProt);GO=Biological Process: galactose metabolic process (GO:0006012),Biological Process: metabolic process (GO:0008152),Biological Process: phosphorylation (GO:0016310),Biological Process: carbohydrate phosphorylation (GO:0046835),Cellular Component: cytoplasm (GO:0005737),Molecular Function: galactokinase activity (GO:0004335),Molecular Function: ATP binding (GO:0005524),Molecular Function: kinase activity (GO:0016301),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Galactokinase (IPR000705),GHMP kinase%2C ATP-binding%2C conserved site (IPR006203),GHMP kinase (IPR006204),Mevalonate/galactokinase (IPR006206),GHMP kinase%2C C-terminal (IPR013750),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Galactokinase galactose-binding domain (IPR019539),Galactokinase%2C conserved site (IPR019741),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=J013027K24;Expression=AK120137;TENOR=Os03t0832600-01;KEGG=Os03t0832600-01 (EC:2.7.1.6)
Chr03	irgsp1_rep	five_prime_UTR	34974719	34974804	.	+	.	Parent=Os03t0832600-01
Chr03	irgsp1_rep	CDS	34974805	34975000	.	+	0	Parent=Os03t0832600-01
Chr03	irgsp1_rep	CDS	34975097	34975269	.	+	2	Parent=Os03t0832600-01
Chr03	irgsp1_rep	CDS	34976184	34976230	.	+	0	Parent=Os03t0832600-01
Chr03	irgsp1_rep	CDS	34976360	34976454	.	+	1	Parent=Os03t0832600-01
Chr03	irgsp1_rep	CDS	34976548	34976630	.	+	2	Parent=Os03t0832600-01
Chr03	irgsp1_rep	CDS	34977145	34977213	.	+	0	Parent=Os03t0832600-01
Chr03	irgsp1_rep	CDS	34977688	34977873	.	+	0	Parent=Os03t0832600-01
Chr03	irgsp1_rep	CDS	34978188	34978322	.	+	0	Parent=Os03t0832600-01
Chr03	irgsp1_rep	CDS	34978588	34978722	.	+	0	Parent=Os03t0832600-01
Chr03	irgsp1_rep	CDS	34978962	34979032	.	+	0	Parent=Os03t0832600-01
Chr03	irgsp1_rep	CDS	34979207	34979284	.	+	1	Parent=Os03t0832600-01
Chr03	irgsp1_rep	CDS	34979440	34979581	.	+	1	Parent=Os03t0832600-01
Chr03	irgsp1_rep	CDS	34979754	34979864	.	+	0	Parent=Os03t0832600-01
Chr03	irgsp1_rep	three_prime_UTR	34979865	34980179	.	+	.	Parent=Os03t0832600-01
Chr03	irgsp1_rep	mRNA	34985196	34990713	.	+	.	ID=Os03t0832800-01;Name=Os03t0832800-01;Locus_id=Os03g0832800;Oryzabase Gene Symbol Synonym(s)=GPAT;Oryzabase Gene Name Synonym(s)=glycerol-3-phosphate acyltransferase;Note=Similar to glycerol-3-phosphate acyltransferase 1.;Transcript_evidence=AK064956 (DDBJ%2C Best hit);ORF_evidence=NP_001148243.1 (RefSeq);NIAS_FLcDNA=J013001A06;Oryzabase=20469;Expression=AK064956;TENOR=Os03t0832800-01;KEGG=Os03t0832800-01
Chr03	irgsp1_rep	five_prime_UTR	34985196	34985289	.	+	.	Parent=Os03t0832800-01
Chr03	irgsp1_rep	CDS	34985290	34986048	.	+	0	Parent=Os03t0832800-01
Chr03	irgsp1_rep	three_prime_UTR	34986049	34990713	.	+	.	Parent=Os03t0832800-01
Chr03	irgsp1_rep	mRNA	34985198	34990759	.	+	.	ID=Os03t0832800-02;Name=Os03t0832800-02;Locus_id=Os03g0832800;Oryzabase Gene Symbol Synonym(s)=GPAT;Oryzabase Gene Name Synonym(s)=glycerol-3-phosphate acyltransferase;Note=Phospholipid/glycerol acyltransferase domain containing protein.;Transcript_evidence=AK061994 (DDBJ%2C Best hit);ORF_evidence=NP_001148243.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Phospholipid/glycerol acyltransferase (IPR002123);NIAS_FLcDNA=001-043-C05;Oryzabase=20469;Expression=AK061994;TENOR=Os03t0832800-02;KEGG=Os03t0832800-02
Chr03	irgsp1_rep	five_prime_UTR	34985198	34985289	.	+	.	Parent=Os03t0832800-02
Chr03	irgsp1_rep	CDS	34985290	34986033	.	+	0	Parent=Os03t0832800-02
Chr03	irgsp1_rep	CDS	34989660	34990541	.	+	0	Parent=Os03t0832800-02
Chr03	irgsp1_rep	three_prime_UTR	34990542	34990759	.	+	.	Parent=Os03t0832800-02
Chr03	irgsp1_rep	mRNA	34985504	34990713	.	+	.	ID=Os03t0832800-03;Name=Os03t0832800-03;Locus_id=Os03g0832800;Oryzabase Gene Symbol Synonym(s)=GPAT;Oryzabase Gene Name Synonym(s)=glycerol-3-phosphate acyltransferase;Note=Similar to glycerol-3-phosphate acyltransferase 1.;Transcript_evidence=AK109423 (DDBJ%2C Best hit);ORF_evidence=NP_001148243.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Phospholipid/glycerol acyltransferase (IPR002123);NIAS_FLcDNA=006-305-G05;Oryzabase=20469;Expression=AK109423;TENOR=Os03t0832800-03;KEGG=Os03t0832800-03
Chr03	irgsp1_rep	five_prime_UTR	34985504	34985505	.	+	.	Parent=Os03t0832800-03
Chr03	irgsp1_rep	CDS	34985506	34986033	.	+	0	Parent=Os03t0832800-03
Chr03	irgsp1_rep	CDS	34989660	34990541	.	+	0	Parent=Os03t0832800-03
Chr03	irgsp1_rep	three_prime_UTR	34990542	34990713	.	+	.	Parent=Os03t0832800-03
Chr03	irgsp1_rep	mRNA	34987075	34990695	.	+	.	ID=Os03t0832800-04;Name=Os03t0832800-04;Locus_id=Os03g0832800;Oryzabase Gene Symbol Synonym(s)=GPAT;Oryzabase Gene Name Synonym(s)=glycerol-3-phosphate acyltransferase;Note=Similar to glycerol-3-phosphate acyltransferase 1.;Transcript_evidence=AK067486 (DDBJ%2C Best hit);ORF_evidence=NP_001148243.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Phospholipid/glycerol acyltransferase (IPR002123);NIAS_FLcDNA=J013108N23;Oryzabase=20469;Expression=AK067486;TENOR=Os03t0832800-04;KEGG=Os03t0832800-04
Chr03	irgsp1_rep	five_prime_UTR	34987075	34989653	.	+	.	Parent=Os03t0832800-04
Chr03	irgsp1_rep	CDS	34989654	34990541	.	+	0	Parent=Os03t0832800-04
Chr03	irgsp1_rep	three_prime_UTR	34990542	34990695	.	+	.	Parent=Os03t0832800-04
Chr03	irgsp1_rep	mRNA	34987946	34990713	.	+	.	ID=Os03t0832800-05;Name=Os03t0832800-05;Locus_id=Os03g0832800;Oryzabase Gene Symbol Synonym(s)=GPAT;Oryzabase Gene Name Synonym(s)=glycerol-3-phosphate acyltransferase;Note=Similar to glycerol-3-phosphate acyltransferase 1.;Transcript_evidence=AK120398 (DDBJ%2C Best hit);ORF_evidence=NP_001148243.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Phospholipid/glycerol acyltransferase (IPR002123);NIAS_FLcDNA=J013087C11;Oryzabase=20469;Expression=AK120398;TENOR=Os03t0832800-05;KEGG=Os03t0832800-05
Chr03	irgsp1_rep	five_prime_UTR	34987946	34989653	.	+	.	Parent=Os03t0832800-05
Chr03	irgsp1_rep	CDS	34989654	34990541	.	+	0	Parent=Os03t0832800-05
Chr03	irgsp1_rep	three_prime_UTR	34990542	34990713	.	+	.	Parent=Os03t0832800-05
Chr03	irgsp1_rep	mRNA	34988374	34988917	.	+	.	ID=Os03t0832800-06;Name=Os03t0832800-06;Locus_id=Os03g0832800;Oryzabase Gene Symbol Synonym(s)=GPAT;Oryzabase Gene Name Synonym(s)=glycerol-3-phosphate acyltransferase;Note=Non-protein coding transcript.;Transcript_evidence=AK062843 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-107-H07;Oryzabase=20469;TENOR=Os03t0832800-06
Chr03	irgsp1_rep	exon	34988374	34988917	.	+	.	Parent=Os03t0832800-06
Chr03	irgsp1_rep	mRNA	34985430	34990518	.	-	.	ID=Os03t0832850-00;Name=Os03t0832850-00;Locus_id=Os03g0832850;Note=Hypothetical protein.;Transcript_evidence=tplb0038i08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0832850-00
Chr03	irgsp1_rep	five_prime_UTR	34990293	34990518	.	-	.	Parent=Os03t0832850-00
Chr03	irgsp1_rep	CDS	34989645	34990292	.	-	0	Parent=Os03t0832850-00
Chr03	irgsp1_rep	CDS	34985430	34985979	.	-	0	Parent=Os03t0832850-00
Chr03	irgsp1_rep	mRNA	34991908	34994895	.	-	.	ID=Os03t0832900-01;Name=Os03t0832900-01;Locus_id=Os03g0832900;Oryzabase Gene Symbol Synonym(s)=OsDjC38;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C38;Note=Similar to DNAJ-like protein (Fragment).;Transcript_evidence=AK060945 (DDBJ%2C Best hit);ORF_evidence=Q84VA4 (UniProt);GO=Molecular Function: heat shock protein binding (GO:0031072);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=006-201-E11;Oryzabase=12195;Expression=AK060945;TENOR=Os03t0832900-01;KEGG=Os03t0832900-01
Chr03	irgsp1_rep	five_prime_UTR	34994821	34994895	.	-	.	Parent=Os03t0832900-01
Chr03	irgsp1_rep	five_prime_UTR	34994715	34994717	.	-	.	Parent=Os03t0832900-01
Chr03	irgsp1_rep	CDS	34994637	34994714	.	-	0	Parent=Os03t0832900-01
Chr03	irgsp1_rep	CDS	34994455	34994553	.	-	0	Parent=Os03t0832900-01
Chr03	irgsp1_rep	CDS	34993536	34993694	.	-	0	Parent=Os03t0832900-01
Chr03	irgsp1_rep	CDS	34993363	34993449	.	-	0	Parent=Os03t0832900-01
Chr03	irgsp1_rep	CDS	34993154	34993225	.	-	0	Parent=Os03t0832900-01
Chr03	irgsp1_rep	CDS	34992222	34992524	.	-	0	Parent=Os03t0832900-01
Chr03	irgsp1_rep	three_prime_UTR	34991908	34992221	.	-	.	Parent=Os03t0832900-01
Chr03	irgsp1_rep	mRNA	35002945	35004094	.	+	.	ID=Os03t0833100-01;Name=Os03t0833100-01;Locus_id=Os03g0833100;Note=Similar to Tasselseed2 protein (Fragment).;Transcript_evidence=AK068662 (DDBJ%2C Best hit);ORF_evidence=Q2EFH2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013161B14;Expression=AK068662;TENOR=Os03t0833100-01;KEGG=Os03t0833100-01
Chr03	irgsp1_rep	five_prime_UTR	35002945	35002971	.	+	.	Parent=Os03t0833100-01
Chr03	irgsp1_rep	CDS	35002972	35002985	.	+	0	Parent=Os03t0833100-01
Chr03	irgsp1_rep	CDS	35003099	35003882	.	+	1	Parent=Os03t0833100-01
Chr03	irgsp1_rep	three_prime_UTR	35003883	35004094	.	+	.	Parent=Os03t0833100-01
Chr03	irgsp1_rep	mRNA	35004548	35007531	.	+	.	ID=Os03t0833200-01;Name=Os03t0833200-01;Locus_id=Os03g0833200;RAP-DB Gene Symbol Synonym(s)=OsTRM13%2C OsTrm13;Oryzabase Gene Symbol Synonym(s)=OsTRM13%2C OsTrm13%2C TRM13%2C Trm13;Oryzabase Gene Name Synonym(s)=Trm13p homolog;Note=tRNA nucleoside methyltransferase%2C Methyltransferase for the 2'-O-methyladenosine nucleoside modification%2C Regulation of salt stress tolerance%2C ABA hormone response;Transcript_evidence=AK102870;ORF_evidence=Q10B19;GO=Biological Process: tRNA processing (GO:0008033),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Zinc finger%2C CCCH-type%2C TRM13 (IPR021721),TRM13/UPF0224 family%2C U11-48K-like CHHC zinc finger domain (IPR022776),Methyltransferase TRM13 (IPR007871),S-adenosyl-L-methionine-dependent methyltransferase (IPR029063);NIAS_FLcDNA=J033111P07;Manual Curation=June 13%2C 2017;Literature_PMID=28369540;Oryzabase=21689;Expression=AK102870;TENOR=Os03t0833200-01;KEGG=Os03t0833200-01;Subcellular location=nucleus (GO:0005634)
Chr03	irgsp1_rep	five_prime_UTR	35004548	35004639	.	+	.	Parent=Os03t0833200-01
Chr03	irgsp1_rep	CDS	35004640	35004764	.	+	0	Parent=Os03t0833200-01
Chr03	irgsp1_rep	CDS	35004857	35004943	.	+	1	Parent=Os03t0833200-01
Chr03	irgsp1_rep	CDS	35005030	35005326	.	+	1	Parent=Os03t0833200-01
Chr03	irgsp1_rep	CDS	35005418	35005649	.	+	1	Parent=Os03t0833200-01
Chr03	irgsp1_rep	CDS	35006401	35006412	.	+	0	Parent=Os03t0833200-01
Chr03	irgsp1_rep	three_prime_UTR	35006413	35006487	.	+	.	Parent=Os03t0833200-01
Chr03	irgsp1_rep	three_prime_UTR	35006614	35006745	.	+	.	Parent=Os03t0833200-01
Chr03	irgsp1_rep	three_prime_UTR	35006922	35007060	.	+	.	Parent=Os03t0833200-01
Chr03	irgsp1_rep	three_prime_UTR	35007274	35007531	.	+	.	Parent=Os03t0833200-01
Chr03	irgsp1_rep	mRNA	35009407	35015726	.	-	.	ID=Os03t0833300-01;Name=Os03t0833300-01;Locus_id=Os03g0833300;CGSNL Gene Symbol=SPL6;CGSNL Gene Name=RICE SQUAMOSA PROMOTER-BINDING-LIKE 6;Oryzabase Gene Symbol Synonym(s)=OsSPL6%2C DLN106%2C DLN106a%2C DLN106b%2C OsDLN106%2C OsDLN106a%2C OsDLN106b;Oryzabase Gene Name Synonym(s)=Squamosa promoter-binding-like protein 6%2C DLN repressor 106%2C DLN motif protein 106;Note=Similar to Squamosa promoter-binding-like protein 6.;Transcript_evidence=AK065741 (DDBJ%2C Best hit);ORF_evidence=Q75LH6 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Transcription factor%2C SBP-box (IPR004333);NIAS_FLcDNA=J013040K13;Oryzabase=11240;TENOR=Os03t0833300-01
Chr03	irgsp1_rep	five_prime_UTR	35015206	35015726	.	-	.	Parent=Os03t0833300-01
Chr03	irgsp1_rep	CDS	35014613	35015205	.	-	0	Parent=Os03t0833300-01
Chr03	irgsp1_rep	CDS	35012763	35012944	.	-	1	Parent=Os03t0833300-01
Chr03	irgsp1_rep	CDS	35011900	35012202	.	-	2	Parent=Os03t0833300-01
Chr03	irgsp1_rep	CDS	35011588	35011817	.	-	2	Parent=Os03t0833300-01
Chr03	irgsp1_rep	CDS	35010708	35010782	.	-	0	Parent=Os03t0833300-01
Chr03	irgsp1_rep	CDS	35010527	35010634	.	-	0	Parent=Os03t0833300-01
Chr03	irgsp1_rep	CDS	35010318	35010435	.	-	0	Parent=Os03t0833300-01
Chr03	irgsp1_rep	CDS	35010075	35010216	.	-	2	Parent=Os03t0833300-01
Chr03	irgsp1_rep	CDS	35009822	35009960	.	-	1	Parent=Os03t0833300-01
Chr03	irgsp1_rep	CDS	35009407	35009734	.	-	0	Parent=Os03t0833300-01
Chr03	irgsp1_rep	mRNA	35008055	35015638	.	-	.	ID=Os03t0833300-02;Name=Os03t0833300-02;Locus_id=Os03g0833300;RAP-DB Gene Symbol Synonym(s)=SPL6;RAP-DB Gene Name Synonym(s)=SQUAMOSA PROMOTER-BINDING PROTEIN-LIKE 6;CGSNL Gene Symbol=SPL6;CGSNL Gene Name=RICE SQUAMOSA PROMOTER-BINDING-LIKE 6;Oryzabase Gene Symbol Synonym(s)=OsSPL6%2C DLN106%2C DLN106a%2C DLN106b%2C OsDLN106%2C OsDLN106a%2C OsDLN106b;Oryzabase Gene Name Synonym(s)=Squamosa promoter-binding-like protein 6%2C DLN repressor 106%2C DLN motif protein 106;Note=A member of the SPL gene family%2C Transcriptional repressor of the ER stress sensor IRE1;Transcript_evidence=AK069847;ORF_evidence=Q75LH6;GO=Molecular Function: DNA binding (GO:0003677),Cellular Component: nucleus (GO:0005634);InterPro=SBP domain superfamily (IPR036893),Ankyrin repeat-containing domain superfamily (IPR036770),SBP domain (IPR004333),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J023034C10;Manual Curation=April 20%2C 2018;Literature_PMID=29632394,16861571;Oryzabase=11240;Expression=AK069847;TENOR=Os03t0833300-02;Subcellular location=nucleus (GO:0005634)
Chr03	irgsp1_rep	five_prime_UTR	35015206	35015638	.	-	.	Parent=Os03t0833300-02
Chr03	irgsp1_rep	CDS	35014613	35015205	.	-	0	Parent=Os03t0833300-02
Chr03	irgsp1_rep	CDS	35012763	35012944	.	-	1	Parent=Os03t0833300-02
Chr03	irgsp1_rep	CDS	35011900	35012202	.	-	2	Parent=Os03t0833300-02
Chr03	irgsp1_rep	CDS	35011588	35011817	.	-	2	Parent=Os03t0833300-02
Chr03	irgsp1_rep	CDS	35010708	35010782	.	-	0	Parent=Os03t0833300-02
Chr03	irgsp1_rep	CDS	35010527	35010634	.	-	0	Parent=Os03t0833300-02
Chr03	irgsp1_rep	CDS	35010318	35010435	.	-	0	Parent=Os03t0833300-02
Chr03	irgsp1_rep	CDS	35010075	35010216	.	-	2	Parent=Os03t0833300-02
Chr03	irgsp1_rep	CDS	35009822	35009960	.	-	1	Parent=Os03t0833300-02
Chr03	irgsp1_rep	CDS	35009153	35009734	.	-	0	Parent=Os03t0833300-02
Chr03	irgsp1_rep	CDS	35008492	35008929	.	-	0	Parent=Os03t0833300-02
Chr03	irgsp1_rep	three_prime_UTR	35008055	35008491	.	-	.	Parent=Os03t0833300-02
Chr03	irgsp1_rep	mRNA	35009653	35015632	.	-	.	ID=Os03t0833300-03;Name=Os03t0833300-03;Locus_id=Os03g0833300;CGSNL Gene Symbol=SPL6;CGSNL Gene Name=RICE SQUAMOSA PROMOTER-BINDING-LIKE 6;Oryzabase Gene Symbol Synonym(s)=OsSPL6%2C DLN106%2C DLN106a%2C DLN106b%2C OsDLN106%2C OsDLN106a%2C OsDLN106b;Oryzabase Gene Name Synonym(s)=Squamosa promoter-binding-like protein 6%2C DLN repressor 106%2C DLN motif protein 106;Note=Similar to Squamosa promoter-binding-like protein 6.;Transcript_evidence=AK121030 (DDBJ%2C Best hit);ORF_evidence=Q75LH6 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Transcription factor%2C SBP-box (IPR004333);NIAS_FLcDNA=J023050G23;Oryzabase=11240;TENOR=Os03t0833300-03
Chr03	irgsp1_rep	five_prime_UTR	35015206	35015632	.	-	.	Parent=Os03t0833300-03
Chr03	irgsp1_rep	CDS	35014613	35015205	.	-	0	Parent=Os03t0833300-03
Chr03	irgsp1_rep	CDS	35012763	35012944	.	-	1	Parent=Os03t0833300-03
Chr03	irgsp1_rep	CDS	35011900	35012202	.	-	2	Parent=Os03t0833300-03
Chr03	irgsp1_rep	CDS	35011588	35011817	.	-	2	Parent=Os03t0833300-03
Chr03	irgsp1_rep	CDS	35010708	35010782	.	-	0	Parent=Os03t0833300-03
Chr03	irgsp1_rep	CDS	35010527	35010634	.	-	0	Parent=Os03t0833300-03
Chr03	irgsp1_rep	CDS	35010318	35010435	.	-	0	Parent=Os03t0833300-03
Chr03	irgsp1_rep	CDS	35010075	35010216	.	-	2	Parent=Os03t0833300-03
Chr03	irgsp1_rep	CDS	35009822	35009960	.	-	1	Parent=Os03t0833300-03
Chr03	irgsp1_rep	CDS	35009653	35009734	.	-	0	Parent=Os03t0833300-03
Chr03	irgsp1_rep	mRNA	35008307	35015048	.	-	.	ID=Os03t0833300-04;Name=Os03t0833300-04;Locus_id=Os03g0833300;CGSNL Gene Symbol=SPL6;CGSNL Gene Name=RICE SQUAMOSA PROMOTER-BINDING-LIKE 6;Oryzabase Gene Symbol Synonym(s)=OsSPL6%2C DLN106%2C DLN106a%2C DLN106b%2C OsDLN106%2C OsDLN106a%2C OsDLN106b;Oryzabase Gene Name Synonym(s)=Squamosa promoter-binding-like protein 6%2C DLN repressor 106%2C DLN motif protein 106;Note=Similar to Squamosa promoter-binding-like protein 6.;Transcript_evidence=AK072164 (DDBJ%2C Best hit);ORF_evidence=Q75LH6 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Transcription factor%2C SBP-box (IPR004333),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J013130O11;Oryzabase=11240;Expression=AK072164;TENOR=Os03t0833300-04;KEGG=Os03t0833300-04
Chr03	irgsp1_rep	five_prime_UTR	35015047	35015048	.	-	.	Parent=Os03t0833300-04
Chr03	irgsp1_rep	CDS	35014613	35015046	.	-	0	Parent=Os03t0833300-04
Chr03	irgsp1_rep	CDS	35012763	35012944	.	-	1	Parent=Os03t0833300-04
Chr03	irgsp1_rep	CDS	35011900	35012202	.	-	2	Parent=Os03t0833300-04
Chr03	irgsp1_rep	CDS	35011588	35011817	.	-	2	Parent=Os03t0833300-04
Chr03	irgsp1_rep	CDS	35010708	35010782	.	-	0	Parent=Os03t0833300-04
Chr03	irgsp1_rep	CDS	35010527	35010634	.	-	0	Parent=Os03t0833300-04
Chr03	irgsp1_rep	CDS	35010318	35010435	.	-	0	Parent=Os03t0833300-04
Chr03	irgsp1_rep	CDS	35010075	35010216	.	-	2	Parent=Os03t0833300-04
Chr03	irgsp1_rep	CDS	35009822	35009960	.	-	1	Parent=Os03t0833300-04
Chr03	irgsp1_rep	CDS	35009153	35009734	.	-	0	Parent=Os03t0833300-04
Chr03	irgsp1_rep	CDS	35008492	35008929	.	-	0	Parent=Os03t0833300-04
Chr03	irgsp1_rep	three_prime_UTR	35008307	35008491	.	-	.	Parent=Os03t0833300-04
Chr03	irgsp1_rep	mRNA	35024290	35027390	.	-	.	ID=Os03t0833500-01;Name=Os03t0833500-01;Locus_id=Os03g0833500;Note=Hypothetical protein.;Transcript_evidence=AK119356 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-131-F12;TENOR=Os03t0833500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	35027390	35027390	.	-	.	Parent=Os03t0833500-01
Chr03	irgsp1_rep	CDS	35026691	35027389	.	-	0	Parent=Os03t0833500-01
Chr03	irgsp1_rep	three_prime_UTR	35026250	35026690	.	-	.	Parent=Os03t0833500-01
Chr03	irgsp1_rep	three_prime_UTR	35024290	35026115	.	-	.	Parent=Os03t0833500-01
Chr03	irgsp1_rep	mRNA	35025977	35028759	.	+	.	ID=Os03t0833600-01;Name=Os03t0833600-01;Locus_id=Os03g0833600;Note=X8 domain containing protein.;Transcript_evidence=AK109880 (DDBJ%2C Best hit);ORF_evidence=Q10B16 (UniProt);InterPro=X8 (IPR012946);NIAS_FLcDNA=002-149-C11;TENOR=Os03t0833600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	35025977	35026016	.	+	.	Parent=Os03t0833600-01
Chr03	irgsp1_rep	CDS	35026017	35026092	.	+	0	Parent=Os03t0833600-01
Chr03	irgsp1_rep	CDS	35026302	35027582	.	+	2	Parent=Os03t0833600-01
Chr03	irgsp1_rep	CDS	35027827	35027863	.	+	2	Parent=Os03t0833600-01
Chr03	irgsp1_rep	CDS	35028130	35028460	.	+	1	Parent=Os03t0833600-01
Chr03	irgsp1_rep	three_prime_UTR	35028461	35028759	.	+	.	Parent=Os03t0833600-01
Chr03	irgsp1_rep	mRNA	35029108	35031786	.	-	.	ID=Os03t0833700-01;Name=Os03t0833700-01;Locus_id=Os03g0833700;Note=RNA 3'-terminal phosphate cyclase family protein.;Transcript_evidence=AK121918 (DDBJ%2C Best hit);ORF_evidence=NP_680196.1 (RefSeq);GO=Biological Process: RNA processing (GO:0006396),Molecular Function: catalytic activity (GO:0003824);InterPro=RNA 3&apos%3B-terminal phosphate cyclase (IPR000228),RNA 3&apos%3B-terminal phosphate cyclase/enolpyruvate transferase%2C alpha/beta (IPR013792),RNA 3&apos%3B-terminal phosphate cyclase%2C insert domain (IPR013796),RNA 3&apos%3B-terminal phosphate cyclase-like%2C eukaryotic (IPR016443),RNA 3&apos%3B-terminal phosphate cyclase-like%2C conserved site (IPR020719),RNA 3&apos%3B-terminal phosphate cyclase domain (IPR023797);NIAS_FLcDNA=J033106D06;Expression=AK121918;TENOR=Os03t0833700-01;KEGG=Os03t0833700-01
Chr03	irgsp1_rep	five_prime_UTR	35031709	35031786	.	-	.	Parent=Os03t0833700-01
Chr03	irgsp1_rep	CDS	35031503	35031708	.	-	0	Parent=Os03t0833700-01
Chr03	irgsp1_rep	CDS	35031245	35031393	.	-	1	Parent=Os03t0833700-01
Chr03	irgsp1_rep	CDS	35030515	35030696	.	-	2	Parent=Os03t0833700-01
Chr03	irgsp1_rep	CDS	35030262	35030437	.	-	0	Parent=Os03t0833700-01
Chr03	irgsp1_rep	CDS	35029931	35030141	.	-	1	Parent=Os03t0833700-01
Chr03	irgsp1_rep	CDS	35029390	35029599	.	-	0	Parent=Os03t0833700-01
Chr03	irgsp1_rep	three_prime_UTR	35029108	35029389	.	-	.	Parent=Os03t0833700-01
Chr03	irgsp1_rep	mRNA	35037354	35041627	.	+	.	ID=Os03t0833800-01;Name=Os03t0833800-01;Locus_id=Os03g0833800;Oryzabase Gene Symbol Synonym(s)=OsPGL28%2C PGL28;Oryzabase Gene Name Synonym(s)=Polygalacturonases-Like 28%2C PG-like 28;Note=Pectin lyase fold/virulence factor domain containing protein.;Transcript_evidence=AK066209 (DDBJ%2C Best hit);ORF_evidence=NP_001151479.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=J013058D09;Oryzabase=22305;Expression=AK066209;TENOR=Os03t0833800-01;KEGG=Os03t0833800-01
Chr03	irgsp1_rep	five_prime_UTR	35037354	35037779	.	+	.	Parent=Os03t0833800-01
Chr03	irgsp1_rep	five_prime_UTR	35037888	35037986	.	+	.	Parent=Os03t0833800-01
Chr03	irgsp1_rep	CDS	35037987	35038004	.	+	0	Parent=Os03t0833800-01
Chr03	irgsp1_rep	CDS	35038859	35039176	.	+	0	Parent=Os03t0833800-01
Chr03	irgsp1_rep	CDS	35039449	35039569	.	+	0	Parent=Os03t0833800-01
Chr03	irgsp1_rep	CDS	35039661	35039835	.	+	2	Parent=Os03t0833800-01
Chr03	irgsp1_rep	CDS	35039932	35040002	.	+	1	Parent=Os03t0833800-01
Chr03	irgsp1_rep	CDS	35040578	35041305	.	+	2	Parent=Os03t0833800-01
Chr03	irgsp1_rep	three_prime_UTR	35041306	35041627	.	+	.	Parent=Os03t0833800-01
Chr03	irgsp1_rep	mRNA	35041999	35044654	.	-	.	ID=Os03t0833900-02;Name=Os03t0833900-02;Locus_id=Os03g0833900;Note=Similar to Cytosine deaminase (EC 3.5.4.1).;Transcript_evidence=AK073655 (DDBJ%2C Best hit),AK104068 (DDBJ%2C Best hit);ORF_evidence=NP_001105963.1 (RefSeq);NIAS_FLcDNA=J033047O14,001-026-F08;Expression=AK073655;TENOR=Os03t0833900-02;KEGG=Os03t0833900-02 (EC:3.5.4.1)
Chr03	irgsp1_rep	five_prime_UTR	35044552	35044654	.	-	.	Parent=Os03t0833900-02
Chr03	irgsp1_rep	CDS	35044536	35044551	.	-	0	Parent=Os03t0833900-02
Chr03	irgsp1_rep	CDS	35043561	35043620	.	-	2	Parent=Os03t0833900-02
Chr03	irgsp1_rep	CDS	35043239	35043429	.	-	2	Parent=Os03t0833900-02
Chr03	irgsp1_rep	CDS	35042433	35042537	.	-	0	Parent=Os03t0833900-02
Chr03	irgsp1_rep	CDS	35042161	35042349	.	-	0	Parent=Os03t0833900-02
Chr03	irgsp1_rep	three_prime_UTR	35041999	35042160	.	-	.	Parent=Os03t0833900-02
Chr03	irgsp1_rep	mRNA	35042004	35044632	.	-	.	ID=Os03t0833900-03;Name=Os03t0833900-03;Locus_id=Os03g0833900;Note=Similar to Cytidine/deoxycytidylate deaminase family protein.;Transcript_evidence=AK103800 (DDBJ%2C Best hit);ORF_evidence=NP_001105964.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: hydrolase activity (GO:0016787);InterPro=CMP/dCMP deaminase%2C zinc-binding (IPR002125),Cytidine deaminase-like (IPR016193);NIAS_FLcDNA=J033146A16;Expression=AK103800;TENOR=Os03t0833900-03;KEGG=Os03t0833900-03
Chr03	irgsp1_rep	five_prime_UTR	35044552	35044632	.	-	.	Parent=Os03t0833900-03
Chr03	irgsp1_rep	CDS	35044536	35044551	.	-	0	Parent=Os03t0833900-03
Chr03	irgsp1_rep	CDS	35043561	35043620	.	-	2	Parent=Os03t0833900-03
Chr03	irgsp1_rep	CDS	35043170	35043429	.	-	2	Parent=Os03t0833900-03
Chr03	irgsp1_rep	three_prime_UTR	35042433	35043169	.	-	.	Parent=Os03t0833900-03
Chr03	irgsp1_rep	three_prime_UTR	35042004	35042349	.	-	.	Parent=Os03t0833900-03
Chr03	irgsp1_rep	mRNA	35046609	35051987	.	+	.	ID=Os03t0834000-01;Name=Os03t0834000-01;Locus_id=Os03g0834000;CGSNL Gene Symbol=FEN1B;CGSNL Gene Name=FLAP ENDONUCLEASE 1B;Oryzabase Gene Symbol Synonym(s)=OsFEN-1b;Oryzabase Gene Name Synonym(s)=Flap endonuclease-1b;Note=Flap endonuclease-1b (EC 3.-.-.-) (OsFEN-1b).;Transcript_evidence=AK062149 (DDBJ%2C Best hit);ORF_evidence=Q75LI2 (UniProt);GO=Biological Process: DNA repair (GO:0006281),Molecular Function: DNA binding (GO:0003677),Molecular Function: catalytic activity (GO:0003824),Molecular Function: nuclease activity (GO:0004518),Molecular Function: 5'-3' exonuclease activity (GO:0008409),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=5'-3' exonuclease%2C N-terminal (IPR002421),DNA repair protein (XPGC)/yeast Rad (IPR006084),XPG N-terminal (IPR006085),XPG/RAD2 endonuclease (IPR006086),Helix-hairpin-helix motif%2C class 2 (IPR008918),XPG conserved site (IPR019974),5'-3' exonuclease%2C C-terminal domain (IPR020045);NIAS_FLcDNA=001-045-H03;Oryzabase=8990;Expression=AK062149;TENOR=Os03t0834000-01;KEGG=Os03t0834000-01 (EC:3.-.-.-)
Chr03	irgsp1_rep	five_prime_UTR	35046609	35046713	.	+	.	Parent=Os03t0834000-01
Chr03	irgsp1_rep	CDS	35046714	35046725	.	+	0	Parent=Os03t0834000-01
Chr03	irgsp1_rep	CDS	35046820	35046936	.	+	0	Parent=Os03t0834000-01
Chr03	irgsp1_rep	CDS	35047566	35047624	.	+	0	Parent=Os03t0834000-01
Chr03	irgsp1_rep	CDS	35047715	35047774	.	+	1	Parent=Os03t0834000-01
Chr03	irgsp1_rep	CDS	35048011	35048064	.	+	1	Parent=Os03t0834000-01
Chr03	irgsp1_rep	CDS	35048146	35048194	.	+	1	Parent=Os03t0834000-01
Chr03	irgsp1_rep	CDS	35048307	35048354	.	+	0	Parent=Os03t0834000-01
Chr03	irgsp1_rep	CDS	35048703	35048768	.	+	0	Parent=Os03t0834000-01
Chr03	irgsp1_rep	CDS	35049405	35049455	.	+	0	Parent=Os03t0834000-01
Chr03	irgsp1_rep	CDS	35049546	35049665	.	+	0	Parent=Os03t0834000-01
Chr03	irgsp1_rep	CDS	35049735	35049819	.	+	0	Parent=Os03t0834000-01
Chr03	irgsp1_rep	CDS	35050242	35050323	.	+	2	Parent=Os03t0834000-01
Chr03	irgsp1_rep	CDS	35050480	35050588	.	+	1	Parent=Os03t0834000-01
Chr03	irgsp1_rep	CDS	35050665	35050719	.	+	0	Parent=Os03t0834000-01
Chr03	irgsp1_rep	CDS	35050817	35050865	.	+	2	Parent=Os03t0834000-01
Chr03	irgsp1_rep	CDS	35050945	35051002	.	+	1	Parent=Os03t0834000-01
Chr03	irgsp1_rep	CDS	35051589	35051753	.	+	0	Parent=Os03t0834000-01
Chr03	irgsp1_rep	three_prime_UTR	35051754	35051987	.	+	.	Parent=Os03t0834000-01
Chr03	irgsp1_rep	mRNA	35046639	35052011	.	+	.	ID=Os03t0834000-02;Name=Os03t0834000-02;Locus_id=Os03g0834000;CGSNL Gene Symbol=FEN1B;CGSNL Gene Name=FLAP ENDONUCLEASE 1B;Oryzabase Gene Symbol Synonym(s)=OsFEN-1b;Oryzabase Gene Name Synonym(s)=Flap endonuclease-1b;Note=Similar to Flap endonuclease 1b.;Transcript_evidence=AK069540 (DDBJ%2C Best hit);ORF_evidence=Q75LI2 (UniProt);GO=Biological Process: DNA repair (GO:0006281),Molecular Function: nuclease activity (GO:0004518),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=DNA repair protein (XPGC)/yeast Rad (IPR006084),XPG N-terminal (IPR006085),XPG/RAD2 endonuclease (IPR006086),XPG conserved site (IPR019974);NIAS_FLcDNA=J023019F12;Oryzabase=8990;Expression=AK069540;TENOR=Os03t0834000-02;KEGG=Os03t0834000-02 (EC:3.-.-.-)
Chr03	irgsp1_rep	five_prime_UTR	35046639	35046713	.	+	.	Parent=Os03t0834000-02
Chr03	irgsp1_rep	CDS	35046714	35046725	.	+	0	Parent=Os03t0834000-02
Chr03	irgsp1_rep	CDS	35046820	35046936	.	+	0	Parent=Os03t0834000-02
Chr03	irgsp1_rep	CDS	35047566	35047624	.	+	0	Parent=Os03t0834000-02
Chr03	irgsp1_rep	CDS	35047715	35047774	.	+	1	Parent=Os03t0834000-02
Chr03	irgsp1_rep	CDS	35048011	35048064	.	+	1	Parent=Os03t0834000-02
Chr03	irgsp1_rep	CDS	35048146	35048194	.	+	1	Parent=Os03t0834000-02
Chr03	irgsp1_rep	CDS	35048307	35048354	.	+	0	Parent=Os03t0834000-02
Chr03	irgsp1_rep	CDS	35048703	35048768	.	+	0	Parent=Os03t0834000-02
Chr03	irgsp1_rep	CDS	35049405	35049455	.	+	0	Parent=Os03t0834000-02
Chr03	irgsp1_rep	CDS	35049546	35049665	.	+	0	Parent=Os03t0834000-02
Chr03	irgsp1_rep	CDS	35049735	35049854	.	+	0	Parent=Os03t0834000-02
Chr03	irgsp1_rep	three_prime_UTR	35049855	35050323	.	+	.	Parent=Os03t0834000-02
Chr03	irgsp1_rep	three_prime_UTR	35050480	35050588	.	+	.	Parent=Os03t0834000-02
Chr03	irgsp1_rep	three_prime_UTR	35050665	35050719	.	+	.	Parent=Os03t0834000-02
Chr03	irgsp1_rep	three_prime_UTR	35050817	35050865	.	+	.	Parent=Os03t0834000-02
Chr03	irgsp1_rep	three_prime_UTR	35050945	35051002	.	+	.	Parent=Os03t0834000-02
Chr03	irgsp1_rep	three_prime_UTR	35051589	35052011	.	+	.	Parent=Os03t0834000-02
Chr03	irgsp1_rep	mRNA	35053006	35055367	.	+	.	ID=Os03t0834050-01;Name=Os03t0834050-01;Locus_id=Os03g0834050;RAP-DB Gene Symbol Synonym(s)=OsHAD1;RAP-DB Gene Name Synonym(s)=haloacid dehalogenase (HAD)-like hydrolase 1%2C Haloacid Dehalogenase-Like APase 1;CGSNL Gene Symbol=HAD1;CGSNL Gene Name=HALOACID DEHALOGENASE 1;Oryzabase Gene Symbol Synonym(s)=OsHAD1;Oryzabase Gene Name Synonym(s)=haloacid dehalogenase 1;Note=Haloacid dehalogenase-like APase%2C Low-Pi-responsive haloacid dehalogenase (HAD)-like hydrolase%2C Pi homeostasis;Transcript_evidence=AK240756;ORF_evidence=Q75LI3;GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=HAD hydrolase%2C subfamily IA (IPR006439),Pyrimidine 5-nucleotidase (IPR010237),HAD-like domain (IPR023214);NIAS_FLcDNA=J053031P13;Manual Curation=August 17%2C 2017;Literature_PMID=28637831;Oryzabase=21880;TENOR=Os03t0834050-01;KEGG=Os03t0834050-01;Subcellular location=cytosol (GO:0005829), membrane (GO:0016020)
Chr03	irgsp1_rep	five_prime_UTR	35053006	35053034	.	+	.	Parent=Os03t0834050-01
Chr03	irgsp1_rep	five_prime_UTR	35053590	35053647	.	+	.	Parent=Os03t0834050-01
Chr03	irgsp1_rep	CDS	35053648	35053693	.	+	0	Parent=Os03t0834050-01
Chr03	irgsp1_rep	CDS	35053791	35053856	.	+	2	Parent=Os03t0834050-01
Chr03	irgsp1_rep	CDS	35053960	35054057	.	+	2	Parent=Os03t0834050-01
Chr03	irgsp1_rep	CDS	35054158	35054283	.	+	0	Parent=Os03t0834050-01
Chr03	irgsp1_rep	CDS	35054365	35054649	.	+	0	Parent=Os03t0834050-01
Chr03	irgsp1_rep	CDS	35054734	35054799	.	+	0	Parent=Os03t0834050-01
Chr03	irgsp1_rep	CDS	35054893	35055042	.	+	0	Parent=Os03t0834050-01
Chr03	irgsp1_rep	three_prime_UTR	35055043	35055367	.	+	.	Parent=Os03t0834050-01
Chr03	irgsp1_rep	mRNA	35059273	35059345	.	+	.	ID=Os03t0834150-00;Name=Os03t0834150-00;Locus_id=Os03g0834150;Note=Non-protein coding transcript.;Transcript_evidence=X06284 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0834150-00
Chr03	irgsp1_rep	exon	35059273	35059345	.	+	.	Parent=Os03t0834150-00
Chr03	irgsp1_rep	mRNA	35059649	35060264	.	+	.	ID=Os03t0834300-00;Name=Os03t0834300-00;Locus_id=Os03g0834300;Note=Similar to GRAS family transcription factor containing protein%2C expressed.;Transcript_evidence=AK241384 (DDBJ%2C Secondary hit);ORF_evidence=Q7XCD7 (UniProt);TENOR=Os03t0834300-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	35059649	35059650	.	+	.	Parent=Os03t0834300-00
Chr03	irgsp1_rep	CDS	35059651	35059932	.	+	0	Parent=Os03t0834300-00
Chr03	irgsp1_rep	CDS	35059951	35060034	.	+	0	Parent=Os03t0834300-00
Chr03	irgsp1_rep	three_prime_UTR	35060035	35060264	.	+	.	Parent=Os03t0834300-00
Chr03	irgsp1_rep	mRNA	35062479	35062689	.	+	.	ID=Os03t0834466-00;Name=Os03t0834466-00;Locus_id=Os03g0834466;Note=Similar to MADS-box transcription factor 21.;Transcript_evidence=BT008965 (DDBJ);ORF_evidence=D3U2H6 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box (IPR002100);TENOR=Os03t0834466-00
Chr03	irgsp1_rep	five_prime_UTR	35062479	35062491	.	+	.	Parent=Os03t0834466-00
Chr03	irgsp1_rep	CDS	35062492	35062689	.	+	0	Parent=Os03t0834466-00
Chr03	irgsp1_rep	mRNA	35084708	35088492	.	+	.	ID=Os03t0835100-00;Name=Os03t0835100-00;Locus_id=Os03g0835100;Note=Similar to Chloroplast protein import component Toc159.;Transcript_evidence=AK373768 (DDBJ);ORF_evidence=Q75LI9 (UniProt);GO=Molecular Function: GTP binding (GO:0005525),Molecular Function: hydrolase activity%2C acting on acid anhydrides (GO:0016817);InterPro=Chloroplast protein import component Toc86/159 (IPR005690),AIG1 (IPR006703),Domain of unknown function DUF3406%2C chloroplast translocase (IPR024283);TENOR=Os03t0835100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	35084708	35084771	.	+	.	Parent=Os03t0835100-00
Chr03	irgsp1_rep	CDS	35084772	35088392	.	+	0	Parent=Os03t0835100-00
Chr03	irgsp1_rep	three_prime_UTR	35088393	35088492	.	+	.	Parent=Os03t0835100-00
Chr03	irgsp1_rep	mRNA	35090847	35091639	.	-	.	ID=Os03t0835150-01;Name=Os03t0835150-01;Locus_id=Os03g0835150;Note=Conserved hypothetical protein.;Transcript_evidence=AK243368 (DDBJ%2C Best hit);ORF_evidence=NP_001173702.1 (RefSeq);NIAS_FLcDNA=J100062B07;TENOR=Os03t0835150-01;KEGG=Os03t0835150-01
Chr03	irgsp1_rep	five_prime_UTR	35091538	35091639	.	-	.	Parent=Os03t0835150-01
Chr03	irgsp1_rep	CDS	35091310	35091537	.	-	0	Parent=Os03t0835150-01
Chr03	irgsp1_rep	three_prime_UTR	35090847	35091309	.	-	.	Parent=Os03t0835150-01
Chr03	irgsp1_rep	mRNA	35100108	35101692	.	-	.	ID=Os03t0835300-01;Name=Os03t0835300-01;Locus_id=Os03g0835300;Note=Hypothetical protein.;Transcript_evidence=AK064539 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-112-A02;Expression=AK064539;TENOR=Os03t0835300-01;KEGG=Os03t0835300-01
Chr03	irgsp1_rep	five_prime_UTR	35100658	35101692	.	-	.	Parent=Os03t0835300-01
Chr03	irgsp1_rep	CDS	35100214	35100657	.	-	0	Parent=Os03t0835300-01
Chr03	irgsp1_rep	three_prime_UTR	35100108	35100213	.	-	.	Parent=Os03t0835300-01
Chr03	irgsp1_rep	mRNA	35100372	35103525	.	+	.	ID=Os03t0835400-01;Name=Os03t0835400-01;Locus_id=Os03g0835400;Note=Similar to Uvs101.;Transcript_evidence=AK061773 (DDBJ%2C Best hit),AK098986 (DDBJ%2C Best hit),AK105896 (DDBJ%2C Best hit);ORF_evidence=Q75LJ3 (UniProt);GO=Molecular Function: electron carrier activity (GO:0009055),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Electron transfer flavoprotein%2C alpha subunit (IPR001308),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Electron transfer flavoprotein%2C alpha/beta-subunit%2C N-terminal (IPR014730),Electron transfer flavoprotein%2C alpha subunit%2C C-terminal (IPR014731),Electron transfer flavoprotein%2C alpha subunit%2C C-terminal%2C conserved site (IPR018206);NIAS_FLcDNA=001-039-D01,J013093P06,001-204-F02;Expression=AK061773;TENOR=Os03t0835400-01;KEGG=Os03t0835400-01
Chr03	irgsp1_rep	five_prime_UTR	35100372	35100541	.	+	.	Parent=Os03t0835400-01
Chr03	irgsp1_rep	CDS	35100542	35100631	.	+	0	Parent=Os03t0835400-01
Chr03	irgsp1_rep	CDS	35100804	35100989	.	+	0	Parent=Os03t0835400-01
Chr03	irgsp1_rep	CDS	35101146	35101357	.	+	0	Parent=Os03t0835400-01
Chr03	irgsp1_rep	CDS	35101975	35102132	.	+	1	Parent=Os03t0835400-01
Chr03	irgsp1_rep	CDS	35102429	35102587	.	+	2	Parent=Os03t0835400-01
Chr03	irgsp1_rep	CDS	35102735	35102787	.	+	2	Parent=Os03t0835400-01
Chr03	irgsp1_rep	CDS	35103079	35103219	.	+	0	Parent=Os03t0835400-01
Chr03	irgsp1_rep	CDS	35103327	35103404	.	+	0	Parent=Os03t0835400-01
Chr03	irgsp1_rep	three_prime_UTR	35103405	35103525	.	+	.	Parent=Os03t0835400-01
Chr03	irgsp1_rep	mRNA	35105148	35112495	.	-	.	ID=Os03t0835600-01;Name=Os03t0835600-01;Locus_id=Os03g0835600;RAP-DB Gene Symbol Synonym(s)=OsACBP6;RAP-DB Gene Name Synonym(s)=Acyl-CoA-binding protein 6;CGSNL Gene Symbol=ACBP6;CGSNL Gene Name=ACYL-COA-BINDING PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsACBP6;Oryzabase Gene Name Synonym(s)=Acyl-CoA-binding protein 6;Note=Acyl-CoA-binding protein %2C Peroxisomal beta-oxidation%2C Lipid metabolism%2C Stress response;Transcript_evidence=AK101677;ORF_evidence=Q10B01;GO=Molecular Function: fatty-acyl-CoA binding (GO:0000062),Molecular Function: protein binding (GO:0005515);InterPro=FERM/acyl-CoA-binding protein%2C 3-helical bundle (IPR014352),Acyl-CoA-binding protein%2C ACBP (IPR000582),Kelch-type beta propeller (IPR015915);NIAS_FLcDNA=J033058G04;Manual Curation=February 16%2C 2015;Literature_PMID=24738983,21128943;Oryzabase=18296;TENOR=Os03t0835600-01;KEGG=Os03t0835600-01
Chr03	irgsp1_rep	five_prime_UTR	35112289	35112495	.	-	.	Parent=Os03t0835600-01
Chr03	irgsp1_rep	CDS	35112142	35112288	.	-	0	Parent=Os03t0835600-01
Chr03	irgsp1_rep	CDS	35111898	35111968	.	-	0	Parent=Os03t0835600-01
Chr03	irgsp1_rep	CDS	35111444	35111507	.	-	1	Parent=Os03t0835600-01
Chr03	irgsp1_rep	CDS	35111306	35111377	.	-	0	Parent=Os03t0835600-01
Chr03	irgsp1_rep	CDS	35110888	35111088	.	-	0	Parent=Os03t0835600-01
Chr03	irgsp1_rep	CDS	35110682	35110759	.	-	0	Parent=Os03t0835600-01
Chr03	irgsp1_rep	CDS	35109999	35110109	.	-	0	Parent=Os03t0835600-01
Chr03	irgsp1_rep	CDS	35109856	35109922	.	-	0	Parent=Os03t0835600-01
Chr03	irgsp1_rep	CDS	35109682	35109743	.	-	2	Parent=Os03t0835600-01
Chr03	irgsp1_rep	CDS	35108894	35109033	.	-	0	Parent=Os03t0835600-01
Chr03	irgsp1_rep	CDS	35108590	35108713	.	-	1	Parent=Os03t0835600-01
Chr03	irgsp1_rep	CDS	35108389	35108503	.	-	0	Parent=Os03t0835600-01
Chr03	irgsp1_rep	CDS	35107721	35107809	.	-	2	Parent=Os03t0835600-01
Chr03	irgsp1_rep	CDS	35107559	35107642	.	-	0	Parent=Os03t0835600-01
Chr03	irgsp1_rep	CDS	35107316	35107471	.	-	0	Parent=Os03t0835600-01
Chr03	irgsp1_rep	CDS	35106948	35107091	.	-	0	Parent=Os03t0835600-01
Chr03	irgsp1_rep	CDS	35106221	35106280	.	-	0	Parent=Os03t0835600-01
Chr03	irgsp1_rep	CDS	35105427	35105609	.	-	0	Parent=Os03t0835600-01
Chr03	irgsp1_rep	three_prime_UTR	35105148	35105426	.	-	.	Parent=Os03t0835600-01
Chr03	irgsp1_rep	mRNA	35105171	35108713	.	-	.	ID=Os03t0835600-02;Name=Os03t0835600-02;Locus_id=Os03g0835600;CGSNL Gene Symbol=ACBP6;CGSNL Gene Name=ACYL-COA-BINDING PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsACBP6;Oryzabase Gene Name Synonym(s)=Acyl-CoA-binding protein 6;Note=Hypothetical conserved gene.;Transcript_evidence=AK066390 (DDBJ%2C Best hit);ORF_evidence=Q75LJ4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Kelch-type beta propeller (IPR015915);NIAS_FLcDNA=J013068G09;Oryzabase=18296;TENOR=Os03t0835600-02;KEGG=Os03t0835600-02
Chr03	irgsp1_rep	five_prime_UTR	35108713	35108713	.	-	.	Parent=Os03t0835600-02
Chr03	irgsp1_rep	CDS	35108590	35108712	.	-	0	Parent=Os03t0835600-02
Chr03	irgsp1_rep	CDS	35108389	35108503	.	-	0	Parent=Os03t0835600-02
Chr03	irgsp1_rep	CDS	35107721	35107809	.	-	2	Parent=Os03t0835600-02
Chr03	irgsp1_rep	CDS	35107559	35107642	.	-	0	Parent=Os03t0835600-02
Chr03	irgsp1_rep	CDS	35107316	35107471	.	-	0	Parent=Os03t0835600-02
Chr03	irgsp1_rep	CDS	35106948	35107094	.	-	0	Parent=Os03t0835600-02
Chr03	irgsp1_rep	CDS	35106221	35106280	.	-	0	Parent=Os03t0835600-02
Chr03	irgsp1_rep	CDS	35105427	35105609	.	-	0	Parent=Os03t0835600-02
Chr03	irgsp1_rep	three_prime_UTR	35105171	35105426	.	-	.	Parent=Os03t0835600-02
Chr03	irgsp1_rep	mRNA	35113637	35114321	.	-	.	ID=Os03t0835700-00;Name=Os03t0835700-00;Locus_id=Os03g0835700;Note=Heat shock protein Hsp20 domain containing protein.;Transcript_evidence=AJ971375 (DDBJ);ORF_evidence=Q75LJ5 (UniProt);InterPro=Heat shock protein Hsp20 (IPR002068),HSP20-like chaperone (IPR008978);TENOR=Os03t0835700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	35113761	35114321	.	-	0	Parent=Os03t0835700-00
Chr03	irgsp1_rep	three_prime_UTR	35113637	35113760	.	-	.	Parent=Os03t0835700-00
Chr03	irgsp1_rep	mRNA	35115335	35121303	.	+	.	ID=Os03t0835800-01;Name=Os03t0835800-01;Locus_id=Os03g0835800;Oryzabase Gene Symbol Synonym(s)=GPA3;Oryzabase Gene Name Synonym(s)=GLUTELIN PRECURSOR ACCUMULATION3%2C glutelin precursor accumulation 3;Note=Galactose oxidase/kelch%2C beta-propeller domain containing protein.;Transcript_evidence=AK102903 (DDBJ%2C Best hit);ORF_evidence=Q10AZ7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Kelch repeat type 1 (IPR006652),Kelch repeat type 2 (IPR011498),Kelch-type beta propeller (IPR015915);NIAS_FLcDNA=J033113E15;Oryzabase=15518;Expression=AK102903;TENOR=Os03t0835800-01;KEGG=Os03t0835800-01
Chr03	irgsp1_rep	five_prime_UTR	35115335	35115449	.	+	.	Parent=Os03t0835800-01
Chr03	irgsp1_rep	CDS	35115450	35115535	.	+	0	Parent=Os03t0835800-01
Chr03	irgsp1_rep	CDS	35115619	35115716	.	+	1	Parent=Os03t0835800-01
Chr03	irgsp1_rep	CDS	35115843	35115981	.	+	2	Parent=Os03t0835800-01
Chr03	irgsp1_rep	CDS	35116076	35116104	.	+	1	Parent=Os03t0835800-01
Chr03	irgsp1_rep	CDS	35116220	35116316	.	+	2	Parent=Os03t0835800-01
Chr03	irgsp1_rep	CDS	35116407	35116462	.	+	1	Parent=Os03t0835800-01
Chr03	irgsp1_rep	CDS	35116573	35116680	.	+	2	Parent=Os03t0835800-01
Chr03	irgsp1_rep	CDS	35116802	35116858	.	+	2	Parent=Os03t0835800-01
Chr03	irgsp1_rep	CDS	35117358	35117449	.	+	2	Parent=Os03t0835800-01
Chr03	irgsp1_rep	CDS	35118088	35118172	.	+	0	Parent=Os03t0835800-01
Chr03	irgsp1_rep	CDS	35119107	35119259	.	+	2	Parent=Os03t0835800-01
Chr03	irgsp1_rep	CDS	35119399	35119493	.	+	2	Parent=Os03t0835800-01
Chr03	irgsp1_rep	CDS	35119636	35119812	.	+	0	Parent=Os03t0835800-01
Chr03	irgsp1_rep	CDS	35119900	35120058	.	+	0	Parent=Os03t0835800-01
Chr03	irgsp1_rep	three_prime_UTR	35120059	35120478	.	+	.	Parent=Os03t0835800-01
Chr03	irgsp1_rep	three_prime_UTR	35120588	35120683	.	+	.	Parent=Os03t0835800-01
Chr03	irgsp1_rep	three_prime_UTR	35120837	35121303	.	+	.	Parent=Os03t0835800-01
Chr03	irgsp1_rep	mRNA	35115335	35121327	.	+	.	ID=Os03t0835800-02;Name=Os03t0835800-02;Locus_id=Os03g0835800;RAP-DB Gene Symbol Synonym(s)=GPA3;RAP-DB Gene Name Synonym(s)=GLUTELIN PRECURSOR ACCUMULATION3%2C glutelin precursor accumulation 3;Oryzabase Gene Symbol Synonym(s)=GPA3;Oryzabase Gene Name Synonym(s)=GLUTELIN PRECURSOR ACCUMULATION3%2C glutelin precursor accumulation 3;Note=Kelch-repeat protein%2C Regulator of post-Golgi vesicular traffic;Transcript_evidence=Inferred from literature;ORF_evidence=Q10AZ7;GO=Molecular Function: protein binding (GO:0005515);InterPro=Kelch-type beta propeller (IPR015915),Galactose oxidase%2C beta-propeller (IPR015916),Kelch repeat type 1 (IPR006652);Manual Curation=February 20%2C 2014;Literature_PMID=24488962;Oryzabase=15518;TENOR=Os03t0835800-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	35115335	35115449	.	+	.	Parent=Os03t0835800-02
Chr03	irgsp1_rep	CDS	35115450	35115535	.	+	0	Parent=Os03t0835800-02
Chr03	irgsp1_rep	CDS	35115619	35115716	.	+	1	Parent=Os03t0835800-02
Chr03	irgsp1_rep	CDS	35115843	35115981	.	+	2	Parent=Os03t0835800-02
Chr03	irgsp1_rep	CDS	35116076	35116104	.	+	1	Parent=Os03t0835800-02
Chr03	irgsp1_rep	CDS	35116220	35116316	.	+	2	Parent=Os03t0835800-02
Chr03	irgsp1_rep	CDS	35116407	35116462	.	+	1	Parent=Os03t0835800-02
Chr03	irgsp1_rep	CDS	35116573	35116680	.	+	2	Parent=Os03t0835800-02
Chr03	irgsp1_rep	CDS	35116802	35116858	.	+	2	Parent=Os03t0835800-02
Chr03	irgsp1_rep	CDS	35117358	35117449	.	+	2	Parent=Os03t0835800-02
Chr03	irgsp1_rep	CDS	35118088	35118172	.	+	0	Parent=Os03t0835800-02
Chr03	irgsp1_rep	CDS	35119107	35119259	.	+	2	Parent=Os03t0835800-02
Chr03	irgsp1_rep	CDS	35119399	35119493	.	+	2	Parent=Os03t0835800-02
Chr03	irgsp1_rep	CDS	35119636	35119812	.	+	0	Parent=Os03t0835800-02
Chr03	irgsp1_rep	CDS	35119900	35120003	.	+	0	Parent=Os03t0835800-02
Chr03	irgsp1_rep	CDS	35120409	35120478	.	+	1	Parent=Os03t0835800-02
Chr03	irgsp1_rep	CDS	35120588	35120647	.	+	0	Parent=Os03t0835800-02
Chr03	irgsp1_rep	three_prime_UTR	35120648	35120683	.	+	.	Parent=Os03t0835800-02
Chr03	irgsp1_rep	three_prime_UTR	35120837	35121327	.	+	.	Parent=Os03t0835800-02
Chr03	irgsp1_rep	mRNA	35122475	35124341	.	+	.	ID=Os03t0835900-01;Name=Os03t0835900-01;Locus_id=Os03g0835900;Oryzabase Gene Symbol Synonym(s)=OsFd3%2C Fd3;Oryzabase Gene Name Synonym(s)=ferredoxin 3;Note=Similar to Ferredoxin III%2C chloroplast precursor (Fd III).;Transcript_evidence=AK121063 (DDBJ%2C Best hit);ORF_evidence=D3JUX1 (UniProt);GO=Biological Process: electron transport chain (GO:0022900),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: iron-sulfur cluster binding (GO:0051536),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=Ferredoxin (IPR001041),2Fe-2S ferredoxin%2C iron-sulphur binding site (IPR006058),Ferredoxin [2Fe-2S]%2C plant (IPR010241),Beta-grasp fold%2C ferredoxin-type (IPR012675);NIAS_FLcDNA=J023058L21;Oryzabase=19955;Expression=AK121063;TENOR=Os03t0835900-01;KEGG=Os03t0835900-01
Chr03	irgsp1_rep	five_prime_UTR	35122475	35122593	.	+	.	Parent=Os03t0835900-01
Chr03	irgsp1_rep	five_prime_UTR	35123606	35123613	.	+	.	Parent=Os03t0835900-01
Chr03	irgsp1_rep	CDS	35123614	35124075	.	+	0	Parent=Os03t0835900-01
Chr03	irgsp1_rep	three_prime_UTR	35124076	35124341	.	+	.	Parent=Os03t0835900-01
Chr03	irgsp1_rep	mRNA	35123591	35124074	.	-	.	ID=Os03t0835950-00;Name=Os03t0835950-00;Locus_id=Os03g0835950;Note=Non-protein coding transcript.;Transcript_evidence=AK370418 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0835950-00
Chr03	irgsp1_rep	exon	35123591	35124074	.	-	.	Parent=Os03t0835950-00
Chr03	irgsp1_rep	mRNA	35125628	35129314	.	-	.	ID=Os03t0836000-01;Name=Os03t0836000-01;Locus_id=Os03g0836000;Oryzabase Gene Symbol Synonym(s)=RAc3;Oryzabase Gene Name Synonym(s)=Actin 3;Note=Similar to Actin 7 (Actin 2).;Transcript_evidence=AK063598 (DDBJ%2C Best hit);ORF_evidence=Q10AZ4 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Actin-like (IPR004000),Actin%2C conserved site (IPR004001),Actin/actin-like conserved site (IPR020902);NIAS_FLcDNA=001-118-B07;Oryzabase=14440;Expression=AK063598;TENOR=Os03t0836000-01;KEGG=Os03t0836000-01
Chr03	irgsp1_rep	five_prime_UTR	35129190	35129314	.	-	.	Parent=Os03t0836000-01
Chr03	irgsp1_rep	five_prime_UTR	35127698	35127701	.	-	.	Parent=Os03t0836000-01
Chr03	irgsp1_rep	CDS	35127638	35127697	.	-	0	Parent=Os03t0836000-01
Chr03	irgsp1_rep	CDS	35127154	35127548	.	-	0	Parent=Os03t0836000-01
Chr03	irgsp1_rep	CDS	35126448	35127060	.	-	1	Parent=Os03t0836000-01
Chr03	irgsp1_rep	CDS	35125973	35126038	.	-	0	Parent=Os03t0836000-01
Chr03	irgsp1_rep	three_prime_UTR	35125628	35125972	.	-	.	Parent=Os03t0836000-01
Chr03	irgsp1_rep	mRNA	35125652	35127712	.	+	.	ID=Os03t0836050-00;Name=Os03t0836050-00;Locus_id=Os03g0836050;Note=Hypothetical gene.;Transcript_evidence=BT018641 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0836050-00;KEGG=Os03t0836050-00
Chr03	irgsp1_rep	five_prime_UTR	35125652	35125821	.	+	.	Parent=Os03t0836050-00
Chr03	irgsp1_rep	five_prime_UTR	35125882	35126042	.	+	.	Parent=Os03t0836050-00
Chr03	irgsp1_rep	five_prime_UTR	35126452	35126684	.	+	.	Parent=Os03t0836050-00
Chr03	irgsp1_rep	CDS	35126685	35126945	.	+	0	Parent=Os03t0836050-00
Chr03	irgsp1_rep	three_prime_UTR	35126946	35127060	.	+	.	Parent=Os03t0836050-00
Chr03	irgsp1_rep	three_prime_UTR	35127154	35127559	.	+	.	Parent=Os03t0836050-00
Chr03	irgsp1_rep	three_prime_UTR	35127652	35127712	.	+	.	Parent=Os03t0836050-00
Chr03	irgsp1_rep	mRNA	35134125	35137266	.	-	.	ID=Os03t0836200-01;Name=Os03t0836200-01;Locus_id=Os03g0836200;Oryzabase Gene Symbol Synonym(s)=OsRZ1;Oryzabase Gene Name Synonym(s)=zinc finger-containing glycine-rich RNA-binding protein 1;Note=Similar to RNA-binding protein RZ-1.;Transcript_evidence=AK067084 (DDBJ%2C Best hit);ORF_evidence=NP_001149519.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA recognition motif domain (IPR000504),Zinc finger%2C CCHC-type (IPR001878),Nucleotide-binding%2C alpha-beta plait (IPR012677),Zinc finger%2C CCHC retroviral-type (IPR013084);NIAS_FLcDNA=J013095N17;Oryzabase=13467;Expression=AK067084;TENOR=Os03t0836200-01;KEGG=Os03t0836200-01
Chr03	irgsp1_rep	five_prime_UTR	35137191	35137266	.	-	.	Parent=Os03t0836200-01
Chr03	irgsp1_rep	five_prime_UTR	35136504	35136505	.	-	.	Parent=Os03t0836200-01
Chr03	irgsp1_rep	CDS	35136393	35136503	.	-	0	Parent=Os03t0836200-01
Chr03	irgsp1_rep	CDS	35135349	35135855	.	-	0	Parent=Os03t0836200-01
Chr03	irgsp1_rep	three_prime_UTR	35135312	35135348	.	-	.	Parent=Os03t0836200-01
Chr03	irgsp1_rep	three_prime_UTR	35134830	35135155	.	-	.	Parent=Os03t0836200-01
Chr03	irgsp1_rep	three_prime_UTR	35134125	35134758	.	-	.	Parent=Os03t0836200-01
Chr03	irgsp1_rep	mRNA	35135182	35137261	.	-	.	ID=Os03t0836200-02;Name=Os03t0836200-02;Locus_id=Os03g0836200;Oryzabase Gene Symbol Synonym(s)=OsRZ1;Oryzabase Gene Name Synonym(s)=zinc finger-containing glycine-rich RNA-binding protein 1;Note=Similar to RNA-binding protein RZ-1.;Transcript_evidence=AK058443 (DDBJ%2C Best hit);ORF_evidence=NP_001149519.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA recognition motif domain (IPR000504),Zinc finger%2C CCHC-type (IPR001878),Nucleotide-binding%2C alpha-beta plait (IPR012677),Zinc finger%2C CCHC retroviral-type (IPR013084);NIAS_FLcDNA=001-015-G03;Oryzabase=13467;Expression=AK058443;TENOR=Os03t0836200-02;KEGG=Os03t0836200-02
Chr03	irgsp1_rep	five_prime_UTR	35137191	35137261	.	-	.	Parent=Os03t0836200-02
Chr03	irgsp1_rep	five_prime_UTR	35136504	35136505	.	-	.	Parent=Os03t0836200-02
Chr03	irgsp1_rep	CDS	35136393	35136503	.	-	0	Parent=Os03t0836200-02
Chr03	irgsp1_rep	CDS	35135349	35135855	.	-	0	Parent=Os03t0836200-02
Chr03	irgsp1_rep	three_prime_UTR	35135182	35135348	.	-	.	Parent=Os03t0836200-02
Chr03	irgsp1_rep	mRNA	35134127	35137259	.	-	.	ID=Os03t0836200-03;Name=Os03t0836200-03;Locus_id=Os03g0836200;Oryzabase Gene Symbol Synonym(s)=OsRZ1;Oryzabase Gene Name Synonym(s)=zinc finger-containing glycine-rich RNA-binding protein 1;Note=Similar to RNA-binding protein RZ-1.;Transcript_evidence=AK101225 (DDBJ%2C Best hit);ORF_evidence=NP_001149519.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA recognition motif domain (IPR000504),Zinc finger%2C CCHC-type (IPR001878),Nucleotide-binding%2C alpha-beta plait (IPR012677),Zinc finger%2C CCHC retroviral-type (IPR013084);NIAS_FLcDNA=J033031E20;Oryzabase=13467;Expression=AK101225;TENOR=Os03t0836200-03;KEGG=Os03t0836200-03
Chr03	irgsp1_rep	five_prime_UTR	35136504	35137259	.	-	.	Parent=Os03t0836200-03
Chr03	irgsp1_rep	CDS	35136393	35136503	.	-	0	Parent=Os03t0836200-03
Chr03	irgsp1_rep	CDS	35135349	35135855	.	-	0	Parent=Os03t0836200-03
Chr03	irgsp1_rep	three_prime_UTR	35134127	35135348	.	-	.	Parent=Os03t0836200-03
Chr03	irgsp1_rep	mRNA	35140216	35141197	.	+	.	ID=Os03t0836300-01;Name=Os03t0836300-01;Locus_id=Os03g0836300;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK061174 (DDBJ%2C Best hit);ORF_evidence=NP_001150798.1 (RefSeq);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=006-209-C03;Expression=AK061174;TENOR=Os03t0836300-01;KEGG=Os03t0836300-01
Chr03	irgsp1_rep	five_prime_UTR	35140216	35140373	.	+	.	Parent=Os03t0836300-01
Chr03	irgsp1_rep	CDS	35140374	35141012	.	+	0	Parent=Os03t0836300-01
Chr03	irgsp1_rep	three_prime_UTR	35141013	35141197	.	+	.	Parent=Os03t0836300-01
Chr03	irgsp1_rep	mRNA	35145634	35146689	.	+	.	ID=Os03t0836400-01;Name=Os03t0836400-01;Locus_id=Os03g0836400;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK243622 (DDBJ%2C Best hit);ORF_evidence=NP_001173704.1 (RefSeq);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=J100086B18;TENOR=Os03t0836400-01;KEGG=Os03t0836400-01
Chr03	irgsp1_rep	five_prime_UTR	35145634	35145826	.	+	.	Parent=Os03t0836400-01
Chr03	irgsp1_rep	CDS	35145827	35146456	.	+	0	Parent=Os03t0836400-01
Chr03	irgsp1_rep	three_prime_UTR	35146457	35146689	.	+	.	Parent=Os03t0836400-01
Chr03	irgsp1_rep	mRNA	35147311	35149802	.	-	.	ID=Os03t0836500-01;Name=Os03t0836500-01;Locus_id=Os03g0836500;Note=Conserved hypothetical protein.;Transcript_evidence=AK120568 (DDBJ%2C Best hit);ORF_evidence=NP_001143504.1 (RefSeq);NIAS_FLcDNA=J013134A19;Expression=AK120568;TENOR=Os03t0836500-01;KEGG=Os03t0836500-01
Chr03	irgsp1_rep	five_prime_UTR	35149519	35149802	.	-	.	Parent=Os03t0836500-01
Chr03	irgsp1_rep	five_prime_UTR	35148866	35148889	.	-	.	Parent=Os03t0836500-01
Chr03	irgsp1_rep	CDS	35148707	35148865	.	-	0	Parent=Os03t0836500-01
Chr03	irgsp1_rep	CDS	35147582	35147746	.	-	0	Parent=Os03t0836500-01
Chr03	irgsp1_rep	three_prime_UTR	35147311	35147581	.	-	.	Parent=Os03t0836500-01
Chr03	irgsp1_rep	mRNA	35150338	35153148	.	+	.	ID=Os03t0836600-01;Name=Os03t0836600-01;Locus_id=Os03g0836600;Note=Similar to OSIGBa0117N13.1 protein.;Transcript_evidence=AK119272 (DDBJ%2C Best hit);ORF_evidence=Q00RL6 (UniProt);NIAS_FLcDNA=001-130-B04;TENOR=Os03t0836600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	35150338	35151646	.	+	.	Parent=Os03t0836600-01
Chr03	irgsp1_rep	five_prime_UTR	35151726	35151879	.	+	.	Parent=Os03t0836600-01
Chr03	irgsp1_rep	five_prime_UTR	35152064	35152148	.	+	.	Parent=Os03t0836600-01
Chr03	irgsp1_rep	CDS	35152149	35152919	.	+	0	Parent=Os03t0836600-01
Chr03	irgsp1_rep	three_prime_UTR	35152920	35153148	.	+	.	Parent=Os03t0836600-01
Chr03	irgsp1_rep	mRNA	35161307	35163174	.	+	.	ID=Os03t0836800-01;Name=Os03t0836800-01;Locus_id=Os03g0836800;CGSNL Gene Symbol=AH6;CGSNL Gene Name=AMIDOHYDROLASE 6;Oryzabase Gene Symbol Synonym(s)=OsAH6;Oryzabase Gene Name Synonym(s)=amidohydrolase 6;Note=Similar to IAA-amino acid hydrolase 1 (EC 3.5.1.-).;Transcript_evidence=AK061197 (DDBJ%2C Best hit);ORF_evidence=Q851L5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Peptidase M20 (IPR002933),Peptidase M20%2C dimerisation (IPR011650),Amidohydrolase (IPR017439);NIAS_FLcDNA=006-209-H06;Oryzabase=23120;Expression=AK061197;TENOR=Os03t0836800-01;KEGG=Os03t0836800-01
Chr03	irgsp1_rep	five_prime_UTR	35161307	35161307	.	+	.	Parent=Os03t0836800-01
Chr03	irgsp1_rep	CDS	35161308	35161613	.	+	0	Parent=Os03t0836800-01
Chr03	irgsp1_rep	CDS	35162061	35162189	.	+	0	Parent=Os03t0836800-01
Chr03	irgsp1_rep	CDS	35162589	35162984	.	+	0	Parent=Os03t0836800-01
Chr03	irgsp1_rep	three_prime_UTR	35162985	35163174	.	+	.	Parent=Os03t0836800-01
Chr03	irgsp1_rep	mRNA	35168425	35168638	.	+	.	ID=Os03t0836900-00;Name=Os03t0836900-00;Locus_id=Os03g0836900;CGSNL Gene Symbol=AH5;CGSNL Gene Name=AMIDOHYDROLASE 5;Oryzabase Gene Symbol Synonym(s)=OsAH5;Oryzabase Gene Name Synonym(s)=amidohydrolase 5;Note=Non-protein coding transcript.;Transcript_evidence=CT833422 (DDBJ%2C Best hit);ORF_evidence=NONE;Oryzabase=23119;TENOR=Os03t0836900-00
Chr03	irgsp1_rep	exon	35168425	35168638	.	+	.	Parent=Os03t0836900-00
Chr03	irgsp1_rep	mRNA	35168602	35174079	.	-	.	ID=Os03t0837000-01;Name=Os03t0837000-01;Locus_id=Os03g0837000;Note=Dcp1-like decapping domain containing protein.;Transcript_evidence=AK068294 (DDBJ%2C Best hit);ORF_evidence=B9F7H0 (UniProt);InterPro=Dcp1-like decapping (IPR010334);NIAS_FLcDNA=J013148J04;TENOR=Os03t0837000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	35173962	35174079	.	-	.	Parent=Os03t0837000-01
Chr03	irgsp1_rep	CDS	35173770	35173961	.	-	0	Parent=Os03t0837000-01
Chr03	irgsp1_rep	CDS	35172683	35172724	.	-	0	Parent=Os03t0837000-01
Chr03	irgsp1_rep	three_prime_UTR	35172675	35172682	.	-	.	Parent=Os03t0837000-01
Chr03	irgsp1_rep	three_prime_UTR	35172037	35172181	.	-	.	Parent=Os03t0837000-01
Chr03	irgsp1_rep	three_prime_UTR	35170926	35170982	.	-	.	Parent=Os03t0837000-01
Chr03	irgsp1_rep	three_prime_UTR	35170199	35170322	.	-	.	Parent=Os03t0837000-01
Chr03	irgsp1_rep	three_prime_UTR	35169310	35170071	.	-	.	Parent=Os03t0837000-01
Chr03	irgsp1_rep	three_prime_UTR	35168602	35169024	.	-	.	Parent=Os03t0837000-01
Chr03	irgsp1_rep	mRNA	35177757	35183269	.	+	.	ID=Os03t0837100-01;Name=Os03t0837100-01;Locus_id=Os03g0837100;CGSNL Gene Symbol=CESA5;CGSNL Gene Name=CELLULOSE SYNTHASE A5;Oryzabase Gene Symbol Synonym(s)=OsCesA5%2C OsCESA5%2C OS_CESA05;Oryzabase Gene Name Synonym(s)=Cellulose synthase A catalytic subunit 5 [UDP-forming]%2C Cellulose synthase A catalytic subunit 5;Note=Similar to Cellulose synthase-6.;Transcript_evidence=AK100877 (DDBJ%2C Best hit);ORF_evidence=B7F6W2 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Zinc finger%2C RING-type (IPR001841),Cellulose synthase (IPR005150),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J023127C10;Oryzabase=9056;Expression=AK100877;TENOR=Os03t0837100-01;KEGG=Os03t0837100-01 (EC:2.4.1.12)
Chr03	irgsp1_rep	five_prime_UTR	35177757	35177923	.	+	.	Parent=Os03t0837100-01
Chr03	irgsp1_rep	CDS	35177924	35178004	.	+	0	Parent=Os03t0837100-01
Chr03	irgsp1_rep	CDS	35178101	35178296	.	+	0	Parent=Os03t0837100-01
Chr03	irgsp1_rep	CDS	35178382	35178590	.	+	2	Parent=Os03t0837100-01
Chr03	irgsp1_rep	CDS	35178683	35178785	.	+	0	Parent=Os03t0837100-01
Chr03	irgsp1_rep	CDS	35178868	35179042	.	+	2	Parent=Os03t0837100-01
Chr03	irgsp1_rep	CDS	35179432	35179698	.	+	1	Parent=Os03t0837100-01
Chr03	irgsp1_rep	CDS	35179781	35180126	.	+	1	Parent=Os03t0837100-01
Chr03	irgsp1_rep	CDS	35180211	35180348	.	+	0	Parent=Os03t0837100-01
Chr03	irgsp1_rep	CDS	35180460	35180585	.	+	0	Parent=Os03t0837100-01
Chr03	irgsp1_rep	CDS	35180681	35180893	.	+	0	Parent=Os03t0837100-01
Chr03	irgsp1_rep	CDS	35180986	35181277	.	+	0	Parent=Os03t0837100-01
Chr03	irgsp1_rep	CDS	35181374	35181570	.	+	2	Parent=Os03t0837100-01
Chr03	irgsp1_rep	CDS	35181659	35182009	.	+	0	Parent=Os03t0837100-01
Chr03	irgsp1_rep	CDS	35182105	35182689	.	+	0	Parent=Os03t0837100-01
Chr03	irgsp1_rep	three_prime_UTR	35182690	35183269	.	+	.	Parent=Os03t0837100-01
Chr03	irgsp1_rep	mRNA	35179955	35182938	.	+	.	ID=Os03t0837100-02;Name=Os03t0837100-02;Locus_id=Os03g0837100;CGSNL Gene Symbol=CESA5;CGSNL Gene Name=CELLULOSE SYNTHASE A5;Oryzabase Gene Symbol Synonym(s)=OsCesA5%2C OsCESA5%2C OS_CESA05;Oryzabase Gene Name Synonym(s)=Cellulose synthase A catalytic subunit 5 [UDP-forming]%2C Cellulose synthase A catalytic subunit 5;Note=Similar to cDNA clone:J023086F23%2C full insert sequence.;Transcript_evidence=AK101178 (DDBJ%2C Best hit);ORF_evidence=B7F6W2 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150);NIAS_FLcDNA=J033029A22;Oryzabase=9056;Expression=AK101178;TENOR=Os03t0837100-02;KEGG=Os03t0837100-02 (EC:2.4.1.12)
Chr03	irgsp1_rep	five_prime_UTR	35179955	35179955	.	+	.	Parent=Os03t0837100-02
Chr03	irgsp1_rep	CDS	35179956	35180126	.	+	0	Parent=Os03t0837100-02
Chr03	irgsp1_rep	CDS	35180211	35180348	.	+	0	Parent=Os03t0837100-02
Chr03	irgsp1_rep	CDS	35180460	35180585	.	+	0	Parent=Os03t0837100-02
Chr03	irgsp1_rep	CDS	35180681	35180893	.	+	0	Parent=Os03t0837100-02
Chr03	irgsp1_rep	CDS	35180986	35181277	.	+	0	Parent=Os03t0837100-02
Chr03	irgsp1_rep	CDS	35181374	35181570	.	+	2	Parent=Os03t0837100-02
Chr03	irgsp1_rep	CDS	35181659	35182009	.	+	0	Parent=Os03t0837100-02
Chr03	irgsp1_rep	CDS	35182105	35182689	.	+	0	Parent=Os03t0837100-02
Chr03	irgsp1_rep	three_prime_UTR	35182690	35182938	.	+	.	Parent=Os03t0837100-02
Chr03	irgsp1_rep	mRNA	35182103	35183273	.	+	.	ID=Os03t0837100-03;Name=Os03t0837100-03;Locus_id=Os03g0837100;CGSNL Gene Symbol=CESA5;CGSNL Gene Name=CELLULOSE SYNTHASE A5;Oryzabase Gene Symbol Synonym(s)=OsCesA5%2C OsCESA5%2C OS_CESA05;Oryzabase Gene Name Synonym(s)=Cellulose synthase A catalytic subunit 5 [UDP-forming]%2C Cellulose synthase A catalytic subunit 5;Note=Similar to cDNA clone:J023086F23%2C full insert sequence.;Transcript_evidence=AK060814 (DDBJ%2C Best hit);ORF_evidence=Q4U0Z4 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150);NIAS_FLcDNA=001-033-H07;Oryzabase=9056;Expression=AK060814;TENOR=Os03t0837100-03;KEGG=Os03t0837100-03 (EC:2.4.1.12)
Chr03	irgsp1_rep	five_prime_UTR	35182103	35182104	.	+	.	Parent=Os03t0837100-03
Chr03	irgsp1_rep	CDS	35182105	35182689	.	+	0	Parent=Os03t0837100-03
Chr03	irgsp1_rep	three_prime_UTR	35182690	35183273	.	+	.	Parent=Os03t0837100-03
Chr03	irgsp1_rep	mRNA	35190806	35191476	.	+	.	ID=Os03t0837300-01;Name=Os03t0837300-01;Locus_id=Os03g0837300;CGSNL Gene Symbol=LTS1;CGSNL Gene Name=LEAF TIP SENESCENCE 1;Oryzabase Gene Symbol Synonym(s)=OsNaPRT1%2C OsNaPRT1/LTS1%2C NaPRT1;Oryzabase Gene Name Synonym(s)=Leaf Tip Senescence 1%2C Nicotinate Phosphoribosyltransferase 1%2C NaPRTase 1;Note=Similar to Nicotinate phosphoribosyltransferase-like protein.;Transcript_evidence=AK111243 (DDBJ%2C Best hit);ORF_evidence=Q6XQM4 (UniProt);GO=Molecular Function: transferase activity%2C transferring pentosyl groups (GO:0016763);InterPro=Quinolinate phosphoribosyl transferase%2C N-terminal (IPR022412);NIAS_FLcDNA=002-180-D03;Oryzabase=21094;Expression=AK111243;TENOR=Os03t0837300-01;KEGG=Os03t0837300-01
Chr03	irgsp1_rep	five_prime_UTR	35190806	35190877	.	+	.	Parent=Os03t0837300-01
Chr03	irgsp1_rep	CDS	35190878	35191081	.	+	0	Parent=Os03t0837300-01
Chr03	irgsp1_rep	three_prime_UTR	35191082	35191476	.	+	.	Parent=Os03t0837300-01
Chr03	irgsp1_rep	mRNA	35190821	35197438	.	+	.	ID=Os03t0837300-02;Name=Os03t0837300-02;Locus_id=Os03g0837300;RAP-DB Gene Symbol Synonym(s)=OsNaPRT1%2C LTS1;RAP-DB Gene Name Synonym(s)=NaPRTase 1%2C Leaf Tip Senescence 1;CGSNL Gene Symbol=LTS1;CGSNL Gene Name=LEAF TIP SENESCENCE 1;Oryzabase Gene Symbol Synonym(s)=OsNaPRT1%2C OsNaPRT1/LTS1%2C NaPRT1;Oryzabase Gene Name Synonym(s)=Leaf Tip Senescence 1%2C Nicotinate Phosphoribosyltransferase 1%2C NaPRTase 1;Note=Nicotinate phosphoribosyltransferase%2C Leaf senescence;Transcript_evidence=AK121140;ORF_evidence=Q851M0;GO=Biological Process: NAD biosynthetic process (GO:0009435),Biological Process: nicotinate nucleotide salvage (GO:0019358),Molecular Function: nicotinate-nucleotide diphosphorylase (carboxylating) activity (GO:0004514),Molecular Function: nicotinate phosphoribosyltransferase activity (GO:0004516);InterPro=Nicotinate phosphoribosyltransferase family (IPR007229),Nicotinate phosphoribosyltransferase pncB-type (IPR006405),Quinolinate phosphoribosyl transferase%2C C-terminal (IPR002638);NIAS_FLcDNA=J023077G12;Manual Curation=June 13%2C 2016;Literature_PMID=27208230;Oryzabase=21094;Expression=AK121140;TENOR=Os03t0837300-02;KEGG=Os03t0837300-02
Chr03	irgsp1_rep	five_prime_UTR	35190821	35190877	.	+	.	Parent=Os03t0837300-02
Chr03	irgsp1_rep	CDS	35190878	35191035	.	+	0	Parent=Os03t0837300-02
Chr03	irgsp1_rep	CDS	35191772	35191916	.	+	1	Parent=Os03t0837300-02
Chr03	irgsp1_rep	CDS	35192177	35192296	.	+	0	Parent=Os03t0837300-02
Chr03	irgsp1_rep	CDS	35192455	35192589	.	+	0	Parent=Os03t0837300-02
Chr03	irgsp1_rep	CDS	35192673	35192734	.	+	0	Parent=Os03t0837300-02
Chr03	irgsp1_rep	CDS	35192953	35193028	.	+	1	Parent=Os03t0837300-02
Chr03	irgsp1_rep	CDS	35193409	35193510	.	+	0	Parent=Os03t0837300-02
Chr03	irgsp1_rep	CDS	35193663	35193779	.	+	0	Parent=Os03t0837300-02
Chr03	irgsp1_rep	CDS	35193985	35194043	.	+	0	Parent=Os03t0837300-02
Chr03	irgsp1_rep	CDS	35194625	35194799	.	+	1	Parent=Os03t0837300-02
Chr03	irgsp1_rep	CDS	35195443	35195577	.	+	0	Parent=Os03t0837300-02
Chr03	irgsp1_rep	CDS	35195670	35195768	.	+	0	Parent=Os03t0837300-02
Chr03	irgsp1_rep	CDS	35195958	35196066	.	+	0	Parent=Os03t0837300-02
Chr03	irgsp1_rep	CDS	35196796	35196908	.	+	2	Parent=Os03t0837300-02
Chr03	irgsp1_rep	CDS	35197021	35197098	.	+	0	Parent=Os03t0837300-02
Chr03	irgsp1_rep	three_prime_UTR	35197099	35197438	.	+	.	Parent=Os03t0837300-02
Chr03	irgsp1_rep	mRNA	35190883	35197101	.	-	.	ID=Os03t0837350-00;Name=Os03t0837350-00;Locus_id=Os03g0837350;Note=Non-protein coding transcript.;Transcript_evidence=tplb0058g16 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os03t0837350-00
Chr03	irgsp1_rep	exon	35197019	35197101	.	-	.	Parent=Os03t0837350-00
Chr03	irgsp1_rep	exon	35196780	35196911	.	-	.	Parent=Os03t0837350-00
Chr03	irgsp1_rep	exon	35195961	35196054	.	-	.	Parent=Os03t0837350-00
Chr03	irgsp1_rep	exon	35195680	35195771	.	-	.	Parent=Os03t0837350-00
Chr03	irgsp1_rep	exon	35195449	35195587	.	-	.	Parent=Os03t0837350-00
Chr03	irgsp1_rep	exon	35194605	35194804	.	-	.	Parent=Os03t0837350-00
Chr03	irgsp1_rep	exon	35193627	35193814	.	-	.	Parent=Os03t0837350-00
Chr03	irgsp1_rep	exon	35193375	35193476	.	-	.	Parent=Os03t0837350-00
Chr03	irgsp1_rep	exon	35192652	35192785	.	-	.	Parent=Os03t0837350-00
Chr03	irgsp1_rep	exon	35192454	35192574	.	-	.	Parent=Os03t0837350-00
Chr03	irgsp1_rep	exon	35192195	35192295	.	-	.	Parent=Os03t0837350-00
Chr03	irgsp1_rep	exon	35191757	35191930	.	-	.	Parent=Os03t0837350-00
Chr03	irgsp1_rep	exon	35190883	35191021	.	-	.	Parent=Os03t0837350-00
Chr03	irgsp1_rep	mRNA	35207543	35208331	.	+	.	ID=Os03t0837700-00;Name=Os03t0837700-00;Locus_id=Os03g0837700;Oryzabase Gene Symbol Synonym(s)=OsDjC42;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C42;Note=Heat shock protein DnaJ%2C N-terminal domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001051832.1 (RefSeq);GO=Molecular Function: heat shock protein binding (GO:0031072);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623);Oryzabase=12199;TENOR=Os03t0837700-00
Chr03	irgsp1_rep	CDS	35207543	35208331	.	+	0	Parent=Os03t0837700-00
Chr03	irgsp1_rep	mRNA	35208499	35211344	.	-	.	ID=Os03t0837800-01;Name=Os03t0837800-01;Locus_id=Os03g0837800;Note=Endoplasmic reticulum ERp29-type%2C C-terminal domain containing protein.;Transcript_evidence=AK108121 (DDBJ%2C Best hit);ORF_evidence=B8AN56 (UniProt);NIAS_FLcDNA=002-139-C12;Expression=AK108121;TENOR=Os03t0837800-01;KEGG=Os03t0837800-01
Chr03	irgsp1_rep	five_prime_UTR	35211323	35211344	.	-	.	Parent=Os03t0837800-01
Chr03	irgsp1_rep	CDS	35211192	35211322	.	-	0	Parent=Os03t0837800-01
Chr03	irgsp1_rep	CDS	35210876	35210965	.	-	1	Parent=Os03t0837800-01
Chr03	irgsp1_rep	CDS	35210149	35210208	.	-	1	Parent=Os03t0837800-01
Chr03	irgsp1_rep	CDS	35209901	35209940	.	-	1	Parent=Os03t0837800-01
Chr03	irgsp1_rep	CDS	35209715	35209808	.	-	0	Parent=Os03t0837800-01
Chr03	irgsp1_rep	CDS	35209320	35209379	.	-	2	Parent=Os03t0837800-01
Chr03	irgsp1_rep	CDS	35209119	35209210	.	-	2	Parent=Os03t0837800-01
Chr03	irgsp1_rep	CDS	35208895	35208978	.	-	0	Parent=Os03t0837800-01
Chr03	irgsp1_rep	three_prime_UTR	35208499	35208894	.	-	.	Parent=Os03t0837800-01
Chr03	irgsp1_rep	mRNA	35213081	35217846	.	-	.	ID=Os03t0837850-00;Name=Os03t0837850-00;Locus_id=Os03g0837850;Note=Hypothetical gene.;Transcript_evidence=BT085334 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0837850-00;KEGG=Os03t0837850-00
Chr03	irgsp1_rep	five_prime_UTR	35217646	35217846	.	-	.	Parent=Os03t0837850-00
Chr03	irgsp1_rep	five_prime_UTR	35216933	35217003	.	-	.	Parent=Os03t0837850-00
Chr03	irgsp1_rep	five_prime_UTR	35216330	35216775	.	-	.	Parent=Os03t0837850-00
Chr03	irgsp1_rep	five_prime_UTR	35215313	35215555	.	-	.	Parent=Os03t0837850-00
Chr03	irgsp1_rep	five_prime_UTR	35214725	35214863	.	-	.	Parent=Os03t0837850-00
Chr03	irgsp1_rep	five_prime_UTR	35214350	35214619	.	-	.	Parent=Os03t0837850-00
Chr03	irgsp1_rep	CDS	35214212	35214349	.	-	0	Parent=Os03t0837850-00
Chr03	irgsp1_rep	CDS	35213901	35213989	.	-	0	Parent=Os03t0837850-00
Chr03	irgsp1_rep	CDS	35213257	35213287	.	-	1	Parent=Os03t0837850-00
Chr03	irgsp1_rep	three_prime_UTR	35213081	35213256	.	-	.	Parent=Os03t0837850-00
Chr03	irgsp1_rep	mRNA	35212888	35218133	.	+	.	ID=Os03t0837900-01;Name=Os03t0837900-01;Locus_id=Os03g0837900;Note=Streptomyces cyclase/dehydrase family protein.;Transcript_evidence=AK068346 (DDBJ%2C Best hit);ORF_evidence=Q10AX2 (UniProt);InterPro=Streptomyces cyclase/dehydrase (IPR005031),START-like domain (IPR023393);NIAS_FLcDNA=J013148O22;Expression=AK068346;TENOR=Os03t0837900-01;KEGG=Os03t0837900-01
Chr03	irgsp1_rep	five_prime_UTR	35212888	35212897	.	+	.	Parent=Os03t0837900-01
Chr03	irgsp1_rep	CDS	35212898	35213298	.	+	0	Parent=Os03t0837900-01
Chr03	irgsp1_rep	CDS	35213398	35213518	.	+	1	Parent=Os03t0837900-01
Chr03	irgsp1_rep	CDS	35213907	35213992	.	+	0	Parent=Os03t0837900-01
Chr03	irgsp1_rep	CDS	35214215	35214611	.	+	1	Parent=Os03t0837900-01
Chr03	irgsp1_rep	CDS	35214721	35214821	.	+	0	Parent=Os03t0837900-01
Chr03	irgsp1_rep	CDS	35214903	35214969	.	+	1	Parent=Os03t0837900-01
Chr03	irgsp1_rep	CDS	35215337	35215564	.	+	0	Parent=Os03t0837900-01
Chr03	irgsp1_rep	CDS	35216339	35216788	.	+	0	Parent=Os03t0837900-01
Chr03	irgsp1_rep	CDS	35216945	35217017	.	+	0	Parent=Os03t0837900-01
Chr03	irgsp1_rep	CDS	35217663	35217907	.	+	2	Parent=Os03t0837900-01
Chr03	irgsp1_rep	three_prime_UTR	35217908	35218133	.	+	.	Parent=Os03t0837900-01
Chr03	irgsp1_rep	mRNA	35219627	35222805	.	-	.	ID=Os03t0838100-01;Name=Os03t0838100-01;Locus_id=Os03g0838100;CGSNL Gene Symbol=RLCK121;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 121;Oryzabase Gene Symbol Synonym(s)=OsRLCK121;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 121;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK119894 (DDBJ%2C Best hit);ORF_evidence=NP_174690.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),S-receptor-like serine/threonine-protein kinase (IPR024171);NIAS_FLcDNA=002-180-B12;Oryzabase=18827;Expression=AK119894;TENOR=Os03t0838100-01;KEGG=Os03t0838100-01
Chr03	irgsp1_rep	five_prime_UTR	35222396	35222805	.	-	.	Parent=Os03t0838100-01
Chr03	irgsp1_rep	CDS	35219819	35222395	.	-	0	Parent=Os03t0838100-01
Chr03	irgsp1_rep	three_prime_UTR	35219627	35219818	.	-	.	Parent=Os03t0838100-01
Chr03	irgsp1_rep	mRNA	35219477	35222606	.	-	.	ID=Os03t0838100-02;Name=Os03t0838100-02;Locus_id=Os03g0838100;CGSNL Gene Symbol=RLCK121;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 121;Oryzabase Gene Symbol Synonym(s)=OsRLCK121;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 121;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK119863 (DDBJ%2C Best hit);ORF_evidence=NP_174690.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),S-receptor-like serine/threonine-protein kinase (IPR024171);NIAS_FLcDNA=002-178-H10;Oryzabase=18827;Expression=AK119863;TENOR=Os03t0838100-02;KEGG=Os03t0838100-02
Chr03	irgsp1_rep	five_prime_UTR	35222396	35222606	.	-	.	Parent=Os03t0838100-02
Chr03	irgsp1_rep	CDS	35219819	35222395	.	-	0	Parent=Os03t0838100-02
Chr03	irgsp1_rep	three_prime_UTR	35219477	35219818	.	-	.	Parent=Os03t0838100-02
Chr03	irgsp1_rep	mRNA	35219500	35222580	.	-	.	ID=Os03t0838100-04;Name=Os03t0838100-04;Locus_id=Os03g0838100;CGSNL Gene Symbol=RLCK121;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 121;Oryzabase Gene Symbol Synonym(s)=OsRLCK121;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 121;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK119881 (DDBJ%2C Best hit),AK066616 (DDBJ%2C Best hit);ORF_evidence=NP_174690.1 (RefSeq);NIAS_FLcDNA=002-179-G09,J013074M03;Oryzabase=18827;Expression=AK119881;TENOR=Os03t0838100-04;KEGG=Os03t0838100-04
Chr03	irgsp1_rep	five_prime_UTR	35222396	35222580	.	-	.	Parent=Os03t0838100-04
Chr03	irgsp1_rep	CDS	35219819	35222395	.	-	0	Parent=Os03t0838100-04
Chr03	irgsp1_rep	three_prime_UTR	35219500	35219818	.	-	.	Parent=Os03t0838100-04
Chr03	irgsp1_rep	mRNA	35238255	35241951	.	+	.	ID=Os03t0838400-01;Name=Os03t0838400-01;Locus_id=Os03g0838400;CGSNL Gene Symbol=AMT3%3B2;CGSNL Gene Name=AMMONIUM TRANSPORTER 3%3B2;Oryzabase Gene Symbol Synonym(s)=AMT3%3B2%2C OsAMT3%3B2%2C OsAMT3.2;Oryzabase Gene Name Synonym(s)=AMMONIUM TRANSPORTER 3%3B2%2C Ammonium transporter 3 member 2;Note=Ammonium transporter.;Transcript_evidence=AK100411 (DDBJ%2C Best hit);ORF_evidence=Q851M9 (UniProt);GO=Biological Process: ammonium transmembrane transport (GO:0072488),Cellular Component: membrane (GO:0016020),Molecular Function: ammonium transmembrane transporter activity (GO:0008519);InterPro=Ammonium transporter (IPR001905),Blood group Rhesus C/E/D polypeptide (IPR002229),Ammonium transporter AmtB-like (IPR024041);NIAS_FLcDNA=J023087J11;Oryzabase=9304;Expression=AK100411;TENOR=Os03t0838400-01;KEGG=Os03t0838400-01
Chr03	irgsp1_rep	five_prime_UTR	35238255	35238307	.	+	.	Parent=Os03t0838400-01
Chr03	irgsp1_rep	CDS	35238308	35238967	.	+	0	Parent=Os03t0838400-01
Chr03	irgsp1_rep	CDS	35239240	35239525	.	+	0	Parent=Os03t0838400-01
Chr03	irgsp1_rep	CDS	35241163	35241656	.	+	2	Parent=Os03t0838400-01
Chr03	irgsp1_rep	three_prime_UTR	35241657	35241951	.	+	.	Parent=Os03t0838400-01
Chr03	irgsp1_rep	mRNA	35238257	35241935	.	+	.	ID=Os03t0838400-02;Name=Os03t0838400-02;Locus_id=Os03g0838400;CGSNL Gene Symbol=AMT3%3B2;CGSNL Gene Name=AMMONIUM TRANSPORTER 3%3B2;Oryzabase Gene Symbol Synonym(s)=AMT3%3B2%2C OsAMT3%3B2%2C OsAMT3.2;Oryzabase Gene Name Synonym(s)=AMMONIUM TRANSPORTER 3%3B2%2C Ammonium transporter 3 member 2;Note=Similar to Ammonium transporter.;Transcript_evidence=AK069311 (DDBJ%2C Best hit);ORF_evidence=Q851M9 (UniProt);GO=Biological Process: ammonium transmembrane transport (GO:0072488),Cellular Component: membrane (GO:0016020),Molecular Function: ammonium transmembrane transporter activity (GO:0008519);InterPro=Ammonium transporter (IPR001905),Blood group Rhesus C/E/D polypeptide (IPR002229),Ammonium transporter AmtB-like (IPR024041);NIAS_FLcDNA=J023012N17;Oryzabase=9304;Expression=AK069311;TENOR=Os03t0838400-02;KEGG=Os03t0838400-02
Chr03	irgsp1_rep	five_prime_UTR	35238257	35238307	.	+	.	Parent=Os03t0838400-02
Chr03	irgsp1_rep	CDS	35238308	35238317	.	+	0	Parent=Os03t0838400-02
Chr03	irgsp1_rep	CDS	35238648	35238967	.	+	2	Parent=Os03t0838400-02
Chr03	irgsp1_rep	CDS	35239240	35239525	.	+	0	Parent=Os03t0838400-02
Chr03	irgsp1_rep	CDS	35241163	35241656	.	+	2	Parent=Os03t0838400-02
Chr03	irgsp1_rep	three_prime_UTR	35241657	35241935	.	+	.	Parent=Os03t0838400-02
Chr03	irgsp1_rep	mRNA	35238297	35241624	.	-	.	ID=Os03t0838450-00;Name=Os03t0838450-00;Locus_id=Os03g0838450;Note=Hypothetical protein.;Transcript_evidence=BT054429 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0838450-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	35241141	35241624	.	-	.	Parent=Os03t0838450-00
Chr03	irgsp1_rep	five_prime_UTR	35239539	35239579	.	-	.	Parent=Os03t0838450-00
Chr03	irgsp1_rep	CDS	35239256	35239538	.	-	0	Parent=Os03t0838450-00
Chr03	irgsp1_rep	CDS	35238297	35238987	.	-	2	Parent=Os03t0838450-00
Chr03	irgsp1_rep	mRNA	35242074	35242912	.	+	.	ID=Os03t0838500-01;Name=Os03t0838500-01;Locus_id=Os03g0838500;Note=Peptidase S8%2C subtilisin-related domain containing protein.;Transcript_evidence=AK121130 (DDBJ%2C Best hit);ORF_evidence=NP_001149643.1 (RefSeq);GO=Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500);NIAS_FLcDNA=J023075F04;Expression=AK121130;TENOR=Os03t0838500-01;KEGG=Os03t0838500-01
Chr03	irgsp1_rep	five_prime_UTR	35242074	35242098	.	+	.	Parent=Os03t0838500-01
Chr03	irgsp1_rep	CDS	35242099	35242274	.	+	0	Parent=Os03t0838500-01
Chr03	irgsp1_rep	CDS	35242388	35242485	.	+	1	Parent=Os03t0838500-01
Chr03	irgsp1_rep	CDS	35242594	35242670	.	+	2	Parent=Os03t0838500-01
Chr03	irgsp1_rep	three_prime_UTR	35242671	35242912	.	+	.	Parent=Os03t0838500-01
Chr03	irgsp1_rep	mRNA	35251336	35252439	.	+	.	ID=Os03t0838800-00;Name=Os03t0838800-00;Locus_id=Os03g0838800;Note=Zinc finger%2C C2H2 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001173706.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880);TENOR=Os03t0838800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	35251336	35252439	.	+	0	Parent=Os03t0838800-00
Chr03	irgsp1_rep	mRNA	35252892	35255136	.	-	.	ID=Os03t0838900-01;Name=Os03t0838900-01;Locus_id=Os03g0838900;Note=Mitochodrial transcription termination factor-related domain containing protein.;Transcript_evidence=AK066994 (DDBJ%2C Best hit);ORF_evidence=B8AN59 (UniProt);InterPro=Mitochodrial transcription termination factor-related (IPR003690);NIAS_FLcDNA=J013088J21;Expression=AK066994;TENOR=Os03t0838900-01;KEGG=Os03t0838900-01
Chr03	irgsp1_rep	five_prime_UTR	35255019	35255136	.	-	.	Parent=Os03t0838900-01
Chr03	irgsp1_rep	five_prime_UTR	35254553	35254553	.	-	.	Parent=Os03t0838900-01
Chr03	irgsp1_rep	CDS	35254481	35254552	.	-	0	Parent=Os03t0838900-01
Chr03	irgsp1_rep	CDS	35253134	35253718	.	-	0	Parent=Os03t0838900-01
Chr03	irgsp1_rep	three_prime_UTR	35252892	35253133	.	-	.	Parent=Os03t0838900-01
Chr03	irgsp1_rep	mRNA	35255869	35258649	.	-	.	ID=Os03t0839000-01;Name=Os03t0839000-01;Locus_id=Os03g0839000;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK070115 (DDBJ%2C Best hit);ORF_evidence=B6T6Z8 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Protein of unknown function DUF1232 (IPR010652),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J023041E24;Expression=AK070115;TENOR=Os03t0839000-01;KEGG=Os03t0839000-01
Chr03	irgsp1_rep	five_prime_UTR	35258589	35258649	.	-	.	Parent=Os03t0839000-01
Chr03	irgsp1_rep	CDS	35258480	35258588	.	-	0	Parent=Os03t0839000-01
Chr03	irgsp1_rep	CDS	35257361	35257560	.	-	2	Parent=Os03t0839000-01
Chr03	irgsp1_rep	CDS	35256439	35256540	.	-	0	Parent=Os03t0839000-01
Chr03	irgsp1_rep	CDS	35256291	35256342	.	-	0	Parent=Os03t0839000-01
Chr03	irgsp1_rep	CDS	35256091	35256203	.	-	2	Parent=Os03t0839000-01
Chr03	irgsp1_rep	three_prime_UTR	35255869	35256090	.	-	.	Parent=Os03t0839000-01
Chr03	irgsp1_rep	mRNA	35259526	35264535	.	-	.	ID=Os03t0839100-01;Name=Os03t0839100-01;Locus_id=Os03g0839100;Note=Ubiquinone biosynthesis hydroxylase%2C UbiH/UbiF/VisC/COQ6 domain containing protein.;Transcript_evidence=AK109847 (DDBJ%2C Best hit);ORF_evidence=NP_001030758.1 (RefSeq);GO=Biological Process: ubiquinone biosynthetic process (GO:0006744),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: monooxygenase activity (GO:0004497),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C NADH or NADPH as one donor%2C and incorporation of one atom of oxygen (GO:0016709),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Ubiquinone biosynthesis monooxygenase%2C COQ6-type (IPR000689),Monooxygenase%2C FAD-binding (IPR002938),Aromatic-ring hydroxylase-like (IPR003042),Ubiquinone biosynthesis hydroxylase%2C UbiH/UbiF/VisC/COQ6 (IPR010971),Ubiquinone biosynthesis hydroxylase%2C UbiH/UbiF/VisC/COQ6%2C conserved site (IPR018168);NIAS_FLcDNA=002-148-F03;Expression=AK109847;TENOR=Os03t0839100-01;KEGG=Os03t0839100-01 (EC:1.14.13.-)
Chr03	irgsp1_rep	CDS	35264451	35264535	.	-	0	Parent=Os03t0839100-01
Chr03	irgsp1_rep	CDS	35264183	35264199	.	-	2	Parent=Os03t0839100-01
Chr03	irgsp1_rep	CDS	35263951	35264053	.	-	0	Parent=Os03t0839100-01
Chr03	irgsp1_rep	CDS	35263454	35263597	.	-	2	Parent=Os03t0839100-01
Chr03	irgsp1_rep	CDS	35262727	35262785	.	-	2	Parent=Os03t0839100-01
Chr03	irgsp1_rep	CDS	35262104	35262171	.	-	0	Parent=Os03t0839100-01
Chr03	irgsp1_rep	CDS	35261965	35262016	.	-	1	Parent=Os03t0839100-01
Chr03	irgsp1_rep	CDS	35260892	35261080	.	-	0	Parent=Os03t0839100-01
Chr03	irgsp1_rep	CDS	35260201	35260803	.	-	0	Parent=Os03t0839100-01
Chr03	irgsp1_rep	CDS	35259722	35259937	.	-	0	Parent=Os03t0839100-01
Chr03	irgsp1_rep	three_prime_UTR	35259526	35259721	.	-	.	Parent=Os03t0839100-01
Chr03	irgsp1_rep	mRNA	35266207	35269744	.	+	.	ID=Os03t0839200-01;Name=Os03t0839200-01;Locus_id=Os03g0839200;Note=Multi antimicrobial extrusion protein MatE family protein.;Transcript_evidence=AK241888 (DDBJ%2C Best hit);ORF_evidence=XP_002888851.1 (RefSeq);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);NIAS_FLcDNA=J075002C19;TENOR=Os03t0839200-01;KEGG=Os03t0839200-01
Chr03	irgsp1_rep	five_prime_UTR	35266207	35266269	.	+	.	Parent=Os03t0839200-01
Chr03	irgsp1_rep	CDS	35266270	35267244	.	+	0	Parent=Os03t0839200-01
Chr03	irgsp1_rep	CDS	35268751	35269326	.	+	0	Parent=Os03t0839200-01
Chr03	irgsp1_rep	three_prime_UTR	35269327	35269744	.	+	.	Parent=Os03t0839200-01
Chr03	irgsp1_rep	mRNA	35266359	35269193	.	-	.	ID=Os03t0839250-00;Name=Os03t0839250-00;Locus_id=Os03g0839250;Note=Hypothetical protein.;Transcript_evidence=EU968520 (DDBJ);ORF_evidence=longestORF;TENOR=Os03t0839250-00
Chr03	irgsp1_rep	five_prime_UTR	35268764	35269193	.	-	.	Parent=Os03t0839250-00
Chr03	irgsp1_rep	five_prime_UTR	35267217	35267259	.	-	.	Parent=Os03t0839250-00
Chr03	irgsp1_rep	CDS	35267007	35267216	.	-	0	Parent=Os03t0839250-00
Chr03	irgsp1_rep	CDS	35266359	35266875	.	-	0	Parent=Os03t0839250-00
Chr03	irgsp1_rep	mRNA	35284997	35287321	.	+	.	ID=Os03t0839300-01;Name=Os03t0839300-01;Locus_id=Os03g0839300;Note=Conserved hypothetical protein.;Transcript_evidence=AK064860 (DDBJ%2C Best hit);ORF_evidence=Q10AW0 (UniProt);NIAS_FLcDNA=J013000H19;TENOR=Os03t0839300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	35284997	35285098	.	+	.	Parent=Os03t0839300-01
Chr03	irgsp1_rep	CDS	35285099	35285191	.	+	0	Parent=Os03t0839300-01
Chr03	irgsp1_rep	CDS	35286651	35286874	.	+	0	Parent=Os03t0839300-01
Chr03	irgsp1_rep	CDS	35286954	35287062	.	+	1	Parent=Os03t0839300-01
Chr03	irgsp1_rep	three_prime_UTR	35287063	35287321	.	+	.	Parent=Os03t0839300-01
Chr03	irgsp1_rep	mRNA	35288638	35289401	.	-	.	ID=Os03t0839400-01;Name=Os03t0839400-01;Locus_id=Os03g0839400;Note=Conserved hypothetical protein.;Transcript_evidence=AK111413 (DDBJ%2C Best hit);ORF_evidence=Q5ZBG7 (UniProt);NIAS_FLcDNA=002-182-F10;Expression=AK111413;TENOR=Os03t0839400-01;KEGG=Os03t0839400-01
Chr03	irgsp1_rep	five_prime_UTR	35289189	35289401	.	-	.	Parent=Os03t0839400-01
Chr03	irgsp1_rep	CDS	35288895	35289188	.	-	0	Parent=Os03t0839400-01
Chr03	irgsp1_rep	three_prime_UTR	35288638	35288894	.	-	.	Parent=Os03t0839400-01
Chr03	irgsp1_rep	mRNA	35294108	35295528	.	-	.	ID=Os03t0839600-01;Name=Os03t0839600-01;Locus_id=Os03g0839600;Note=Non-protein coding transcript.;Transcript_evidence=AK099413 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013005G05;TENOR=Os03t0839600-01
Chr03	irgsp1_rep	exon	35295140	35295528	.	-	.	Parent=Os03t0839600-01
Chr03	irgsp1_rep	exon	35294108	35294529	.	-	.	Parent=Os03t0839600-01
Chr03	irgsp1_rep	mRNA	35303778	35305155	.	-	.	ID=Os03t0839700-00;Name=Os03t0839700-00;Locus_id=Os03g0839700;Note=Hypothetical conserved gene.;Transcript_evidence=BT033507 (DDBJ);ORF_evidence=C6ZRR5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os03t0839700-00;KEGG=Os03t0839700-00 (EC:2.7.11.1)
Chr03	irgsp1_rep	CDS	35305006	35305155	.	-	0	Parent=Os03t0839700-00
Chr03	irgsp1_rep	CDS	35304740	35304819	.	-	0	Parent=Os03t0839700-00
Chr03	irgsp1_rep	CDS	35304501	35304654	.	-	1	Parent=Os03t0839700-00
Chr03	irgsp1_rep	CDS	35304192	35304293	.	-	0	Parent=Os03t0839700-00
Chr03	irgsp1_rep	three_prime_UTR	35303778	35304191	.	-	.	Parent=Os03t0839700-00
Chr03	irgsp1_rep	mRNA	35309856	35310752	.	-	.	ID=Os03t0839800-01;Name=Os03t0839800-01;Locus_id=Os03g0839800;Note=Protein of unknown function DUF688 domain containing protein.;Transcript_evidence=AK110581 (DDBJ%2C Best hit);ORF_evidence=A2XNV1 (UniProt);InterPro=Protein of unknown function DUF688 (IPR007789);NIAS_FLcDNA=002-168-E09;Expression=AK110581;TENOR=Os03t0839800-01;KEGG=Os03t0839800-01
Chr03	irgsp1_rep	five_prime_UTR	35310732	35310752	.	-	.	Parent=Os03t0839800-01
Chr03	irgsp1_rep	CDS	35310309	35310731	.	-	0	Parent=Os03t0839800-01
Chr03	irgsp1_rep	three_prime_UTR	35309856	35310308	.	-	.	Parent=Os03t0839800-01
Chr03	irgsp1_rep	mRNA	35312754	35317359	.	-	.	ID=Os03t0839900-01;Name=Os03t0839900-01;Locus_id=Os03g0839900;CGSNL Gene Symbol=RLCK122;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 122;Oryzabase Gene Symbol Synonym(s)=OsRLCK122;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 122;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK067347 (DDBJ%2C Best hit);ORF_evidence=Q851P3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: response to stress (GO:0006950),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),UspA (IPR006016),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013106E16;Oryzabase=18828;Expression=AK067347;TENOR=Os03t0839900-01;KEGG=Os03t0839900-01
Chr03	irgsp1_rep	five_prime_UTR	35317139	35317359	.	-	.	Parent=Os03t0839900-01
Chr03	irgsp1_rep	CDS	35316761	35317138	.	-	0	Parent=Os03t0839900-01
Chr03	irgsp1_rep	CDS	35316238	35316359	.	-	0	Parent=Os03t0839900-01
Chr03	irgsp1_rep	CDS	35314840	35316125	.	-	1	Parent=Os03t0839900-01
Chr03	irgsp1_rep	CDS	35314507	35314755	.	-	2	Parent=Os03t0839900-01
Chr03	irgsp1_rep	CDS	35314243	35314409	.	-	2	Parent=Os03t0839900-01
Chr03	irgsp1_rep	CDS	35313967	35314046	.	-	0	Parent=Os03t0839900-01
Chr03	irgsp1_rep	CDS	35313734	35313881	.	-	1	Parent=Os03t0839900-01
Chr03	irgsp1_rep	CDS	35313360	35313509	.	-	0	Parent=Os03t0839900-01
Chr03	irgsp1_rep	CDS	35313040	35313276	.	-	0	Parent=Os03t0839900-01
Chr03	irgsp1_rep	three_prime_UTR	35312754	35313039	.	-	.	Parent=Os03t0839900-01
Chr03	irgsp1_rep	mRNA	35312453	35317266	.	-	.	ID=Os03t0839900-02;Name=Os03t0839900-02;Locus_id=Os03g0839900;CGSNL Gene Symbol=RLCK122;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 122;Oryzabase Gene Symbol Synonym(s)=OsRLCK122;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 122;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK287450 (DDBJ%2C Best hit);ORF_evidence=NP_001051845.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: response to stress (GO:0006950),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),UspA (IPR006016),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J043017E05;Oryzabase=18828;TENOR=Os03t0839900-02;KEGG=Os03t0839900-02
Chr03	irgsp1_rep	five_prime_UTR	35317139	35317266	.	-	.	Parent=Os03t0839900-02
Chr03	irgsp1_rep	CDS	35316761	35317138	.	-	0	Parent=Os03t0839900-02
Chr03	irgsp1_rep	CDS	35316238	35316359	.	-	0	Parent=Os03t0839900-02
Chr03	irgsp1_rep	CDS	35314840	35316125	.	-	1	Parent=Os03t0839900-02
Chr03	irgsp1_rep	CDS	35314507	35314755	.	-	2	Parent=Os03t0839900-02
Chr03	irgsp1_rep	CDS	35314243	35314409	.	-	2	Parent=Os03t0839900-02
Chr03	irgsp1_rep	CDS	35313967	35314046	.	-	0	Parent=Os03t0839900-02
Chr03	irgsp1_rep	CDS	35313734	35313881	.	-	1	Parent=Os03t0839900-02
Chr03	irgsp1_rep	CDS	35313360	35313509	.	-	0	Parent=Os03t0839900-02
Chr03	irgsp1_rep	CDS	35313040	35313276	.	-	0	Parent=Os03t0839900-02
Chr03	irgsp1_rep	three_prime_UTR	35312453	35313039	.	-	.	Parent=Os03t0839900-02
Chr03	irgsp1_rep	mRNA	35332095	35334400	.	+	.	ID=Os03t0840200-01;Name=Os03t0840200-01;Locus_id=Os03g0840200;Note=Six-bladed beta-propeller%2C TolB-like domain containing protein.;Transcript_evidence=AK067797 (DDBJ%2C Best hit);ORF_evidence=A3APK3 (UniProt);InterPro=WD40-like Beta Propeller (IPR011659);NIAS_FLcDNA=J013116D11;Expression=AK067797;TENOR=Os03t0840200-01;KEGG=Os03t0840200-01
Chr03	irgsp1_rep	five_prime_UTR	35332095	35332150	.	+	.	Parent=Os03t0840200-01
Chr03	irgsp1_rep	CDS	35332151	35334217	.	+	0	Parent=Os03t0840200-01
Chr03	irgsp1_rep	three_prime_UTR	35334218	35334400	.	+	.	Parent=Os03t0840200-01
Chr03	irgsp1_rep	mRNA	35332122	35334407	.	+	.	ID=Os03t0840200-02;Name=Os03t0840200-02;Locus_id=Os03g0840200;Note=Six-bladed beta-propeller%2C TolB-like domain containing protein.;Transcript_evidence=AK100408 (DDBJ%2C Best hit);ORF_evidence=A3APK3 (UniProt);InterPro=WD40-like Beta Propeller (IPR011659);NIAS_FLcDNA=J023087F22;Expression=AK100408;TENOR=Os03t0840200-02;KEGG=Os03t0840200-02
Chr03	irgsp1_rep	five_prime_UTR	35332122	35332150	.	+	.	Parent=Os03t0840200-02
Chr03	irgsp1_rep	CDS	35332151	35334217	.	+	0	Parent=Os03t0840200-02
Chr03	irgsp1_rep	three_prime_UTR	35334218	35334407	.	+	.	Parent=Os03t0840200-02
Chr03	irgsp1_rep	mRNA	35332184	35334079	.	-	.	ID=Os03t0840275-00;Name=Os03t0840275-00;Locus_id=Os03g0840275;Note=Hypothetical protein.;Transcript_evidence=tplb0047g24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0840275-00
Chr03	irgsp1_rep	five_prime_UTR	35333824	35334079	.	-	.	Parent=Os03t0840275-00
Chr03	irgsp1_rep	CDS	35333128	35333823	.	-	0	Parent=Os03t0840275-00
Chr03	irgsp1_rep	three_prime_UTR	35332513	35333127	.	-	.	Parent=Os03t0840275-00
Chr03	irgsp1_rep	three_prime_UTR	35332184	35332452	.	-	.	Parent=Os03t0840275-00
Chr03	irgsp1_rep	mRNA	35335224	35335627	.	-	.	ID=Os03t0840350-00;Name=Os03t0840350-00;Locus_id=Os03g0840350;Note=Non-protein coding transcript.;Transcript_evidence=CT835273 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os03t0840350-00
Chr03	irgsp1_rep	exon	35335224	35335627	.	-	.	Parent=Os03t0840350-00
Chr03	irgsp1_rep	mRNA	35338431	35340635	.	-	.	ID=Os03t0840500-00;Name=Os03t0840500-00;Locus_id=Os03g0840500;Note=Conserved hypothetical protein.;Transcript_evidence=EU943381 (DDBJ);ORF_evidence=NP_001173707.1 (RefSeq);TENOR=Os03t0840500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	35340624	35340635	.	-	.	Parent=Os03t0840500-00
Chr03	irgsp1_rep	CDS	35339514	35340623	.	-	0	Parent=Os03t0840500-00
Chr03	irgsp1_rep	CDS	35339327	35339419	.	-	0	Parent=Os03t0840500-00
Chr03	irgsp1_rep	CDS	35338936	35339016	.	-	0	Parent=Os03t0840500-00
Chr03	irgsp1_rep	three_prime_UTR	35338825	35338935	.	-	.	Parent=Os03t0840500-00
Chr03	irgsp1_rep	three_prime_UTR	35338431	35338682	.	-	.	Parent=Os03t0840500-00
Chr03	irgsp1_rep	mRNA	35350196	35354897	.	-	.	ID=Os03t0840800-01;Name=Os03t0840800-01;Locus_id=Os03g0840800;CGSNL Gene Symbol=PLDdelta2;CGSNL Gene Name=PHOSPHOLIPASE D DELTA 2;Oryzabase Gene Symbol Synonym(s)=OsPLDdelta2%2C RPLD5%2C OsPLDnu1;Oryzabase Gene Name Synonym(s)=Phospholipase D delta 2%2C Phospholipase D nu 1;Note=Similar to Phospholipase D.;Transcript_evidence=AK069703 (DDBJ%2C Best hit);ORF_evidence=B8AN68 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),Phospholipase D (IPR015679),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=J023027C22;Oryzabase=2955;TENOR=Os03t0840800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	35354777	35354897	.	-	.	Parent=Os03t0840800-01
Chr03	irgsp1_rep	CDS	35353841	35354776	.	-	0	Parent=Os03t0840800-01
Chr03	irgsp1_rep	CDS	35353587	35353714	.	-	0	Parent=Os03t0840800-01
Chr03	irgsp1_rep	CDS	35353229	35353232	.	-	1	Parent=Os03t0840800-01
Chr03	irgsp1_rep	three_prime_UTR	35353038	35353228	.	-	.	Parent=Os03t0840800-01
Chr03	irgsp1_rep	three_prime_UTR	35352582	35352842	.	-	.	Parent=Os03t0840800-01
Chr03	irgsp1_rep	three_prime_UTR	35352429	35352497	.	-	.	Parent=Os03t0840800-01
Chr03	irgsp1_rep	three_prime_UTR	35352195	35352342	.	-	.	Parent=Os03t0840800-01
Chr03	irgsp1_rep	three_prime_UTR	35351717	35351865	.	-	.	Parent=Os03t0840800-01
Chr03	irgsp1_rep	three_prime_UTR	35351291	35351461	.	-	.	Parent=Os03t0840800-01
Chr03	irgsp1_rep	three_prime_UTR	35350970	35351173	.	-	.	Parent=Os03t0840800-01
Chr03	irgsp1_rep	three_prime_UTR	35350196	35350543	.	-	.	Parent=Os03t0840800-01
Chr03	irgsp1_rep	mRNA	35355703	35358918	.	-	.	ID=Os03t0840900-01;Name=Os03t0840900-01;Locus_id=Os03g0840900;Note=Protein of unknown function DUF543 family protein.;Transcript_evidence=AK243454 (DDBJ%2C Best hit);ORF_evidence=NP_001051850.1 (RefSeq);InterPro=Protein of unknown function DUF543 (IPR007512);NIAS_FLcDNA=J100070J19;TENOR=Os03t0840900-01;KEGG=Os03t0840900-01
Chr03	irgsp1_rep	five_prime_UTR	35358861	35358918	.	-	.	Parent=Os03t0840900-01
Chr03	irgsp1_rep	CDS	35358641	35358860	.	-	0	Parent=Os03t0840900-01
Chr03	irgsp1_rep	CDS	35356964	35357109	.	-	2	Parent=Os03t0840900-01
Chr03	irgsp1_rep	CDS	35356095	35356109	.	-	0	Parent=Os03t0840900-01
Chr03	irgsp1_rep	three_prime_UTR	35355703	35356094	.	-	.	Parent=Os03t0840900-01
Chr03	irgsp1_rep	mRNA	35360790	35365166	.	-	.	ID=Os03t0841100-01;Name=Os03t0841100-01;Locus_id=Os03g0841100;CGSNL Gene Symbol=WAK28;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 28;Oryzabase Gene Symbol Synonym(s)=OsWAK28;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK120279 (DDBJ%2C Best hit);ORF_evidence=Q6AVR0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EGF-like calcium-binding%2C conserved site (IPR018097);NIAS_FLcDNA=J013049G18;Oryzabase=6928;Expression=AK120279;TENOR=Os03t0841100-01;KEGG=Os03t0841100-01
Chr03	irgsp1_rep	five_prime_UTR	35364940	35365166	.	-	.	Parent=Os03t0841100-01
Chr03	irgsp1_rep	five_prime_UTR	35364229	35364457	.	-	.	Parent=Os03t0841100-01
Chr03	irgsp1_rep	CDS	35363220	35364228	.	-	0	Parent=Os03t0841100-01
Chr03	irgsp1_rep	CDS	35362607	35363113	.	-	2	Parent=Os03t0841100-01
Chr03	irgsp1_rep	CDS	35362251	35362394	.	-	2	Parent=Os03t0841100-01
Chr03	irgsp1_rep	CDS	35360885	35362140	.	-	2	Parent=Os03t0841100-01
Chr03	irgsp1_rep	three_prime_UTR	35360790	35360884	.	-	.	Parent=Os03t0841100-01
Chr03	irgsp1_rep	mRNA	35360899	35362788	.	+	.	ID=Os03t0841150-00;Name=Os03t0841150-00;Locus_id=Os03g0841150;Note=Non-protein coding transcript.;Transcript_evidence=FP093119 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0841150-00
Chr03	irgsp1_rep	exon	35360899	35361582	.	+	.	Parent=Os03t0841150-00
Chr03	irgsp1_rep	exon	35362571	35362788	.	+	.	Parent=Os03t0841150-00
Chr03	irgsp1_rep	mRNA	35380195	35382004	.	-	.	ID=Os03t0841600-01;Name=Os03t0841600-01;Locus_id=Os03g0841600;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK109007 (DDBJ%2C Best hit);ORF_evidence=B6TEH8 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=002-153-H05;Expression=AK109007;TENOR=Os03t0841600-01;KEGG=Os03t0841600-01
Chr03	irgsp1_rep	five_prime_UTR	35382004	35382004	.	-	.	Parent=Os03t0841600-01
Chr03	irgsp1_rep	CDS	35381584	35382003	.	-	0	Parent=Os03t0841600-01
Chr03	irgsp1_rep	CDS	35380551	35381300	.	-	0	Parent=Os03t0841600-01
Chr03	irgsp1_rep	three_prime_UTR	35380195	35380550	.	-	.	Parent=Os03t0841600-01
Chr03	irgsp1_rep	mRNA	35382746	35385192	.	-	.	ID=Os03t0841700-02;Name=Os03t0841700-02;Locus_id=Os03g0841700;CGSNL Gene Name=PROHIBITIN 2;Oryzabase Gene Name Synonym(s)=prohibitin-2;Note=Similar to Prohibitin.;Transcript_evidence=AK059289 (DDBJ%2C Best hit),AK069772 (DDBJ%2C Best hit);ORF_evidence=NP_001104969.1 (RefSeq);NIAS_FLcDNA=001-025-E01,J023028O17;Oryzabase=23365;Expression=AK059289;TENOR=Os03t0841700-02;KEGG=Os03t0841700-02
Chr03	irgsp1_rep	five_prime_UTR	35385070	35385192	.	-	.	Parent=Os03t0841700-02
Chr03	irgsp1_rep	CDS	35384893	35385069	.	-	0	Parent=Os03t0841700-02
Chr03	irgsp1_rep	CDS	35384641	35384757	.	-	0	Parent=Os03t0841700-02
Chr03	irgsp1_rep	CDS	35383917	35384087	.	-	0	Parent=Os03t0841700-02
Chr03	irgsp1_rep	CDS	35383551	35383763	.	-	0	Parent=Os03t0841700-02
Chr03	irgsp1_rep	CDS	35383167	35383361	.	-	0	Parent=Os03t0841700-02
Chr03	irgsp1_rep	three_prime_UTR	35382746	35383166	.	-	.	Parent=Os03t0841700-02
Chr03	irgsp1_rep	mRNA	35385957	35391982	.	-	.	ID=Os03t0841800-01;Name=Os03t0841800-01;Locus_id=Os03g0841800;RAP-DB Gene Symbol Synonym(s)=GL3.3%2C OsSK41%2C OsGSK5%2C qTGW3;RAP-DB Gene Name Synonym(s)=GSK3/SHAGGY-Like Kinase 41%2C QTL FOR THOUSAND GRAIN WEIGHT ON CHROMOSOME 3;Oryzabase Gene Symbol Synonym(s)=GL3.3%2C OsSK41%2C SK41%2C OsGSK5%2C GSK5%2C qTGW3%2C TGW3%2C OsGSK5/OsSK41%2C OsSK41/OsGSK5;Oryzabase Gene Name Synonym(s)=GSK3/SHAGGY-Like Kinase 41%2C QTL FOR THOUSAND GRAIN WEIGHT ON CHROMOSOME 3%2C GSK3-like Kinase 5%2C Glycogen Synthase Kinase-like 5%2C thousand grain weight 3;Note=GSK3/SHAGGY-like kinase%2C A member of the GLYCOGEN SYNTHASE KINASE 3/SHAGGY-like family%2C Regulation of grain length%2C Negative regulation of grain size and weight;Transcript_evidence=AK070062;ORF_evidence=Q6AVQ3;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),Protein kinase domain (IPR000719),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J023042K05;Manual Curation=May 1%2C 2018;Literature_PMID=29567449,29567448;Oryzabase=22603;Expression=AK070062;TENOR=Os03t0841800-01;KEGG=Os03t0841800-01 (EC:2.7.11.26);Subcellular location=cytoplasm (GO:0005737), nucleus (GO:0005634)
Chr03	irgsp1_rep	five_prime_UTR	35391740	35391982	.	-	.	Parent=Os03t0841800-01
Chr03	irgsp1_rep	five_prime_UTR	35391164	35391285	.	-	.	Parent=Os03t0841800-01
Chr03	irgsp1_rep	CDS	35391011	35391163	.	-	0	Parent=Os03t0841800-01
Chr03	irgsp1_rep	CDS	35390569	35390661	.	-	0	Parent=Os03t0841800-01
Chr03	irgsp1_rep	CDS	35390423	35390482	.	-	0	Parent=Os03t0841800-01
Chr03	irgsp1_rep	CDS	35390070	35390342	.	-	0	Parent=Os03t0841800-01
Chr03	irgsp1_rep	CDS	35388904	35388978	.	-	0	Parent=Os03t0841800-01
Chr03	irgsp1_rep	CDS	35387913	35387969	.	-	0	Parent=Os03t0841800-01
Chr03	irgsp1_rep	CDS	35387620	35387760	.	-	0	Parent=Os03t0841800-01
Chr03	irgsp1_rep	CDS	35387501	35387551	.	-	0	Parent=Os03t0841800-01
Chr03	irgsp1_rep	CDS	35387319	35387414	.	-	0	Parent=Os03t0841800-01
Chr03	irgsp1_rep	CDS	35386922	35387005	.	-	0	Parent=Os03t0841800-01
Chr03	irgsp1_rep	CDS	35386718	35386820	.	-	0	Parent=Os03t0841800-01
Chr03	irgsp1_rep	CDS	35386297	35386385	.	-	2	Parent=Os03t0841800-01
Chr03	irgsp1_rep	three_prime_UTR	35385957	35386296	.	-	.	Parent=Os03t0841800-01
Chr03	irgsp1_rep	mRNA	35385995	35387007	.	-	.	ID=Os03t0841800-02;Name=Os03t0841800-02;Locus_id=Os03g0841800;Oryzabase Gene Symbol Synonym(s)=GL3.3%2C OsSK41%2C SK41%2C OsGSK5%2C GSK5%2C qTGW3%2C TGW3%2C OsGSK5/OsSK41%2C OsSK41/OsGSK5;Oryzabase Gene Name Synonym(s)=GSK3/SHAGGY-Like Kinase 41%2C QTL FOR THOUSAND GRAIN WEIGHT ON CHROMOSOME 3%2C GSK3-like Kinase 5%2C Glycogen Synthase Kinase-like 5%2C thousand grain weight 3;Note=Similar to GSK-3-like protein MsK4.;Transcript_evidence=AK059626 (DDBJ%2C Best hit);ORF_evidence=Q8H6X8 (UniProt);GO=Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009);NIAS_FLcDNA=001-030-H08;Oryzabase=22603;Expression=AK059626;TENOR=Os03t0841800-02;KEGG=Os03t0841800-02 (EC:2.7.11.26)
Chr03	irgsp1_rep	five_prime_UTR	35387006	35387007	.	-	.	Parent=Os03t0841800-02
Chr03	irgsp1_rep	CDS	35386922	35387005	.	-	0	Parent=Os03t0841800-02
Chr03	irgsp1_rep	CDS	35386718	35386820	.	-	0	Parent=Os03t0841800-02
Chr03	irgsp1_rep	CDS	35386297	35386385	.	-	2	Parent=Os03t0841800-02
Chr03	irgsp1_rep	three_prime_UTR	35385995	35386296	.	-	.	Parent=Os03t0841800-02
Chr03	irgsp1_rep	mRNA	35387313	35390360	.	+	.	ID=Os03t0841850-00;Name=Os03t0841850-00;Locus_id=Os03g0841850;Note=Hypothetical protein.;Transcript_evidence=tplb0034j24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0841850-00
Chr03	irgsp1_rep	five_prime_UTR	35387313	35387330	.	+	.	Parent=Os03t0841850-00
Chr03	irgsp1_rep	CDS	35387331	35387438	.	+	0	Parent=Os03t0841850-00
Chr03	irgsp1_rep	CDS	35387594	35387719	.	+	0	Parent=Os03t0841850-00
Chr03	irgsp1_rep	three_prime_UTR	35387720	35387803	.	+	.	Parent=Os03t0841850-00
Chr03	irgsp1_rep	three_prime_UTR	35388889	35388965	.	+	.	Parent=Os03t0841850-00
Chr03	irgsp1_rep	three_prime_UTR	35390063	35390360	.	+	.	Parent=Os03t0841850-00
Chr03	irgsp1_rep	mRNA	35393753	35398295	.	-	.	ID=Os03t0841900-00;Name=Os03t0841900-00;Locus_id=Os03g0841900;Note=Similar to carotenoid isomerase 1.;Transcript_evidence=tplb0001p23 (Wheat FLcDNA);ORF_evidence=NP_001147881.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Amine oxidase (IPR002937);TENOR=Os03t0841900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	35397947	35398295	.	-	0	Parent=Os03t0841900-00
Chr03	irgsp1_rep	CDS	35397595	35397827	.	-	2	Parent=Os03t0841900-00
Chr03	irgsp1_rep	CDS	35397376	35397486	.	-	0	Parent=Os03t0841900-00
Chr03	irgsp1_rep	CDS	35397104	35397157	.	-	0	Parent=Os03t0841900-00
Chr03	irgsp1_rep	CDS	35396511	35396798	.	-	0	Parent=Os03t0841900-00
Chr03	irgsp1_rep	CDS	35395488	35395679	.	-	0	Parent=Os03t0841900-00
Chr03	irgsp1_rep	CDS	35394797	35394955	.	-	0	Parent=Os03t0841900-00
Chr03	irgsp1_rep	CDS	35394468	35394704	.	-	0	Parent=Os03t0841900-00
Chr03	irgsp1_rep	CDS	35393766	35394080	.	-	0	Parent=Os03t0841900-00
Chr03	irgsp1_rep	three_prime_UTR	35393753	35393765	.	-	.	Parent=Os03t0841900-00
Chr03	irgsp1_rep	mRNA	35414081	35416004	.	-	.	ID=Os03t0842400-01;Name=Os03t0842400-01;Locus_id=Os03g0842400;Note=Conserved hypothetical protein.;Transcript_evidence=AK107097 (DDBJ%2C Best hit);ORF_evidence=Q2R299 (UniProt);NIAS_FLcDNA=002-121-H09;TENOR=Os03t0842400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	35415734	35416004	.	-	.	Parent=Os03t0842400-01
Chr03	irgsp1_rep	five_prime_UTR	35415257	35415638	.	-	.	Parent=Os03t0842400-01
Chr03	irgsp1_rep	CDS	35414903	35415256	.	-	0	Parent=Os03t0842400-01
Chr03	irgsp1_rep	three_prime_UTR	35414081	35414902	.	-	.	Parent=Os03t0842400-01
Chr03	irgsp1_rep	mRNA	35418613	35419057	.	-	.	ID=Os03t0842501-01;Name=Os03t0842501-01;Locus_id=Os03g0842501;Note=Hypothetical conserved gene.;Transcript_evidence=AK243274 (DDBJ%2C Best hit);ORF_evidence=A2XNX1 (UniProt);NIAS_FLcDNA=J100049O04;TENOR=Os03t0842501-01;KEGG=Os03t0842501-01
Chr03	irgsp1_rep	five_prime_UTR	35418801	35419057	.	-	.	Parent=Os03t0842501-01
Chr03	irgsp1_rep	CDS	35418651	35418800	.	-	0	Parent=Os03t0842501-01
Chr03	irgsp1_rep	three_prime_UTR	35418613	35418650	.	-	.	Parent=Os03t0842501-01
Chr03	irgsp1_rep	mRNA	35424479	35428063	.	+	.	ID=Os03t0842700-01;Name=Os03t0842700-01;Locus_id=Os03g0842700;CGSNL Gene Symbol=RAB5-GEF2;Oryzabase Gene Symbol Synonym(s)=Rab5-GEF2%2C OsRab5-GEF2%2C Rab5GEF2%2C OsRab5GEF2;Oryzabase Gene Name Synonym(s)=Guanine nucleotide exchange factor 2 for Rab5 proteins;Note=Similar to predicted protein.;Transcript_evidence=AK070821 (DDBJ%2C Best hit);ORF_evidence=B8AN76 (UniProt);NIAS_FLcDNA=J023063L20;Oryzabase=22646;TENOR=Os03t0842700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	35424479	35424569	.	+	.	Parent=Os03t0842700-01
Chr03	irgsp1_rep	CDS	35424570	35424670	.	+	0	Parent=Os03t0842700-01
Chr03	irgsp1_rep	CDS	35424753	35424918	.	+	1	Parent=Os03t0842700-01
Chr03	irgsp1_rep	three_prime_UTR	35424919	35425156	.	+	.	Parent=Os03t0842700-01
Chr03	irgsp1_rep	three_prime_UTR	35425679	35425858	.	+	.	Parent=Os03t0842700-01
Chr03	irgsp1_rep	three_prime_UTR	35426836	35428063	.	+	.	Parent=Os03t0842700-01
Chr03	irgsp1_rep	mRNA	35424490	35427194	.	+	.	ID=Os03t0842700-02;Name=Os03t0842700-02;Locus_id=Os03g0842700;CGSNL Gene Symbol=RAB5-GEF2;Oryzabase Gene Symbol Synonym(s)=Rab5-GEF2%2C OsRab5-GEF2%2C Rab5GEF2%2C OsRab5GEF2;Oryzabase Gene Name Synonym(s)=Guanine nucleotide exchange factor 2 for Rab5 proteins;Note=Vacuolar sorting protein 9 domain containing protein.;Transcript_evidence=AK065755 (DDBJ%2C Best hit);ORF_evidence=B9F7I9 (UniProt);InterPro=Vacuolar sorting protein 9 (IPR003123);NIAS_FLcDNA=J013036A18;Oryzabase=22646;TENOR=Os03t0842700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	35424490	35424670	.	+	.	Parent=Os03t0842700-02
Chr03	irgsp1_rep	five_prime_UTR	35424753	35425678	.	+	.	Parent=Os03t0842700-02
Chr03	irgsp1_rep	CDS	35425679	35425930	.	+	0	Parent=Os03t0842700-02
Chr03	irgsp1_rep	three_prime_UTR	35425931	35427194	.	+	.	Parent=Os03t0842700-02
Chr03	irgsp1_rep	mRNA	35424519	35426635	.	+	.	ID=Os03t0842700-03;Name=Os03t0842700-03;Locus_id=Os03g0842700;CGSNL Gene Symbol=RAB5-GEF2;Oryzabase Gene Symbol Synonym(s)=Rab5-GEF2%2C OsRab5-GEF2%2C Rab5GEF2%2C OsRab5GEF2;Oryzabase Gene Name Synonym(s)=Guanine nucleotide exchange factor 2 for Rab5 proteins;Note=Similar to predicted protein.;Transcript_evidence=AK067436 (DDBJ%2C Best hit);ORF_evidence=Q6AVP5 (UniProt);NIAS_FLcDNA=J013101P10;Oryzabase=22646;Expression=AK067436;TENOR=Os03t0842700-03;KEGG=Os03t0842700-03
Chr03	irgsp1_rep	five_prime_UTR	35424519	35424569	.	+	.	Parent=Os03t0842700-03
Chr03	irgsp1_rep	CDS	35424570	35424670	.	+	0	Parent=Os03t0842700-03
Chr03	irgsp1_rep	CDS	35424753	35424903	.	+	1	Parent=Os03t0842700-03
Chr03	irgsp1_rep	CDS	35424986	35425171	.	+	0	Parent=Os03t0842700-03
Chr03	irgsp1_rep	three_prime_UTR	35425172	35426635	.	+	.	Parent=Os03t0842700-03
Chr03	irgsp1_rep	mRNA	35427040	35427964	.	+	.	ID=Os03t0842700-04;Name=Os03t0842700-04;Locus_id=Os03g0842700;CGSNL Gene Symbol=RAB5-GEF2;Oryzabase Gene Symbol Synonym(s)=Rab5-GEF2%2C OsRab5-GEF2%2C Rab5GEF2%2C OsRab5GEF2;Oryzabase Gene Name Synonym(s)=Guanine nucleotide exchange factor 2 for Rab5 proteins;Note=Conserved hypothetical protein.;Transcript_evidence=AK062057 (DDBJ%2C Best hit);ORF_evidence=B9F7I9 (UniProt);NIAS_FLcDNA=001-044-C06;Oryzabase=22646;TENOR=Os03t0842700-04;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	35427040	35427303	.	+	.	Parent=Os03t0842700-04
Chr03	irgsp1_rep	CDS	35427304	35427564	.	+	0	Parent=Os03t0842700-04
Chr03	irgsp1_rep	three_prime_UTR	35427565	35427964	.	+	.	Parent=Os03t0842700-04
Chr03	irgsp1_rep	mRNA	35428647	35430487	.	-	.	ID=Os03t0842900-01;Name=Os03t0842900-01;Locus_id=Os03g0842900;Oryzabase Gene Symbol Synonym(s)=OsEnS-59;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 59;Note=Similar to Steroleosin-B.;Transcript_evidence=AK107425 (DDBJ%2C Best hit);ORF_evidence=Q8LKV5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);NIAS_FLcDNA=002-127-F11;Oryzabase=18383;Expression=AK107425;TENOR=Os03t0842900-01;KEGG=Os03t0842900-01
Chr03	irgsp1_rep	five_prime_UTR	35430305	35430487	.	-	.	Parent=Os03t0842900-01
Chr03	irgsp1_rep	CDS	35430119	35430304	.	-	0	Parent=Os03t0842900-01
Chr03	irgsp1_rep	CDS	35429852	35430044	.	-	0	Parent=Os03t0842900-01
Chr03	irgsp1_rep	CDS	35429692	35429777	.	-	2	Parent=Os03t0842900-01
Chr03	irgsp1_rep	CDS	35429483	35429614	.	-	0	Parent=Os03t0842900-01
Chr03	irgsp1_rep	CDS	35429232	35429399	.	-	0	Parent=Os03t0842900-01
Chr03	irgsp1_rep	CDS	35428849	35429151	.	-	0	Parent=Os03t0842900-01
Chr03	irgsp1_rep	three_prime_UTR	35428647	35428848	.	-	.	Parent=Os03t0842900-01
Chr03	irgsp1_rep	mRNA	35431602	35432500	.	+	.	ID=Os03t0843000-01;Name=Os03t0843000-01;Locus_id=Os03g0843000;Note=Non-protein coding transcript.;Transcript_evidence=AK064669 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-115-D05;TENOR=Os03t0843000-01
Chr03	irgsp1_rep	exon	35431602	35431766	.	+	.	Parent=Os03t0843000-01
Chr03	irgsp1_rep	exon	35432143	35432500	.	+	.	Parent=Os03t0843000-01
Chr03	irgsp1_rep	mRNA	35432741	35434589	.	-	.	ID=Os03t0843100-01;Name=Os03t0843100-01;Locus_id=Os03g0843100;Oryzabase Gene Symbol Synonym(s)=OsRab11A1;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab11A1;Note=Ras GTPase family protein.;Transcript_evidence=AK111499 (DDBJ%2C Best hit);ORF_evidence=B4FEN1 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: intracellular protein transport (GO:0006886),Biological Process: nucleocytoplasmic transport (GO:0006913),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Cellular Component: membrane (GO:0016020),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Ran GTPase (IPR002041),Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C Ras type (IPR020849);NIAS_FLcDNA=J013000K22;Oryzabase=11096;Expression=AK111499;TENOR=Os03t0843100-01;KEGG=Os03t0843100-01
Chr03	irgsp1_rep	five_prime_UTR	35434403	35434589	.	-	.	Parent=Os03t0843100-01
Chr03	irgsp1_rep	CDS	35434220	35434402	.	-	0	Parent=Os03t0843100-01
Chr03	irgsp1_rep	CDS	35433027	35433515	.	-	0	Parent=Os03t0843100-01
Chr03	irgsp1_rep	three_prime_UTR	35432741	35433026	.	-	.	Parent=Os03t0843100-01
Chr03	irgsp1_rep	mRNA	35432738	35434515	.	-	.	ID=Os03t0843100-02;Name=Os03t0843100-02;Locus_id=Os03g0843100;Oryzabase Gene Symbol Synonym(s)=OsRab11A1;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab11A1;Note=Ras GTPase family protein.;Transcript_evidence=AK104362 (DDBJ%2C Best hit),AK104527 (DDBJ%2C Best hit);ORF_evidence=B4FEN1 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: intracellular protein transport (GO:0006886),Biological Process: nucleocytoplasmic transport (GO:0006913),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Cellular Component: membrane (GO:0016020),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Ran GTPase (IPR002041),Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C Ras type (IPR020849);NIAS_FLcDNA=001-035-C06,006-304-A01;Oryzabase=11096;TENOR=Os03t0843100-02
Chr03	irgsp1_rep	five_prime_UTR	35434403	35434515	.	-	.	Parent=Os03t0843100-02
Chr03	irgsp1_rep	CDS	35434220	35434402	.	-	0	Parent=Os03t0843100-02
Chr03	irgsp1_rep	CDS	35433027	35433515	.	-	0	Parent=Os03t0843100-02
Chr03	irgsp1_rep	three_prime_UTR	35432738	35433026	.	-	.	Parent=Os03t0843100-02
Chr03	irgsp1_rep	mRNA	35433121	35434380	.	+	.	ID=Os03t0843150-00;Name=Os03t0843150-00;Locus_id=Os03g0843150;Note=Non-protein coding transcript.;Transcript_evidence=BT084300 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0843150-00
Chr03	irgsp1_rep	exon	35433121	35433490	.	+	.	Parent=Os03t0843150-00
Chr03	irgsp1_rep	exon	35434194	35434380	.	+	.	Parent=Os03t0843150-00
Chr03	irgsp1_rep	mRNA	35438696	35440969	.	+	.	ID=Os03t0843200-01;Name=Os03t0843200-01;Locus_id=Os03g0843200;Note=Protein of unknown function DUF901 family protein.;Transcript_evidence=AK063613 (DDBJ%2C Best hit);ORF_evidence=B6TD02 (UniProt);InterPro=Protein of unknown function DUF901 (IPR010298);NIAS_FLcDNA=001-118-D06;Expression=AK063613;TENOR=Os03t0843200-01;KEGG=Os03t0843200-01
Chr03	irgsp1_rep	CDS	35438696	35438740	.	+	0	Parent=Os03t0843200-01
Chr03	irgsp1_rep	CDS	35439228	35439311	.	+	0	Parent=Os03t0843200-01
Chr03	irgsp1_rep	CDS	35439775	35439813	.	+	0	Parent=Os03t0843200-01
Chr03	irgsp1_rep	CDS	35440318	35440364	.	+	0	Parent=Os03t0843200-01
Chr03	irgsp1_rep	CDS	35440538	35440649	.	+	1	Parent=Os03t0843200-01
Chr03	irgsp1_rep	three_prime_UTR	35440650	35440969	.	+	.	Parent=Os03t0843200-01
Chr03	irgsp1_rep	mRNA	35441296	35443615	.	-	.	ID=Os03t0843300-01;Name=Os03t0843300-01;Locus_id=Os03g0843300;CGSNL Gene Symbol=LEA7;CGSNL Gene Name=LATE EMBRYOGENESIS ABUNDANT PROTEIN 7;Oryzabase Gene Symbol Synonym(s)=OsLEA7%2C OsLEA7a%2C OsLEA7b%2C OsLEA7c;Oryzabase Gene Name Synonym(s)=late embryogenesis abundant protein 7;Note=Late embryogenesis abundant protein 2 family protein.;Transcript_evidence=AK060923 (DDBJ%2C Best hit),AK101917 (DDBJ%2C Best hit),AK104650 (DDBJ%2C Best hit);ORF_evidence=B6T887 (UniProt);GO=Biological Process: response to desiccation (GO:0009269);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864),Immunoglobulin-like fold (IPR013783),Water stress and hypersensitive response domain (IPR013990);NIAS_FLcDNA=001-035-H09,J033071I21,006-311-B05;Oryzabase=10175;TENOR=Os03t0843300-01
Chr03	irgsp1_rep	five_prime_UTR	35443528	35443615	.	-	.	Parent=Os03t0843300-01
Chr03	irgsp1_rep	five_prime_UTR	35443265	35443273	.	-	.	Parent=Os03t0843300-01
Chr03	irgsp1_rep	CDS	35442320	35443264	.	-	0	Parent=Os03t0843300-01
Chr03	irgsp1_rep	CDS	35441623	35441628	.	-	0	Parent=Os03t0843300-01
Chr03	irgsp1_rep	three_prime_UTR	35441296	35441622	.	-	.	Parent=Os03t0843300-01
Chr03	irgsp1_rep	mRNA	35441296	35443574	.	-	.	ID=Os03t0843300-02;Name=Os03t0843300-02;Locus_id=Os03g0843300;CGSNL Gene Symbol=LEA7;CGSNL Gene Name=LATE EMBRYOGENESIS ABUNDANT PROTEIN 7;Oryzabase Gene Symbol Synonym(s)=OsLEA7%2C OsLEA7a%2C OsLEA7b%2C OsLEA7c;Oryzabase Gene Name Synonym(s)=late embryogenesis abundant protein 7;Note=Late embryogenesis abundant protein 2 family protein.;Transcript_evidence=AK099274 (DDBJ%2C Best hit);ORF_evidence=B6T887 (UniProt);GO=Biological Process: response to desiccation (GO:0009269);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864),Immunoglobulin-like fold (IPR013783),Water stress and hypersensitive response domain (IPR013990);NIAS_FLcDNA=J023069E08;Oryzabase=10175;Expression=AK104650;TENOR=Os03t0843300-02;KEGG=Os03t0843300-02;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	35443528	35443574	.	-	.	Parent=Os03t0843300-02
Chr03	irgsp1_rep	five_prime_UTR	35443265	35443273	.	-	.	Parent=Os03t0843300-02
Chr03	irgsp1_rep	CDS	35442320	35443264	.	-	0	Parent=Os03t0843300-02
Chr03	irgsp1_rep	CDS	35441623	35441628	.	-	0	Parent=Os03t0843300-02
Chr03	irgsp1_rep	three_prime_UTR	35441296	35441622	.	-	.	Parent=Os03t0843300-02
Chr03	irgsp1_rep	mRNA	35444425	35446363	.	+	.	ID=Os03t0843400-01;Name=Os03t0843400-01;Locus_id=Os03g0843400;Note=Similar to 30S ribosomal protein S6%2C chloroplast precursor (Fragment).;Transcript_evidence=AK061198 (DDBJ%2C Best hit),AK099076 (DDBJ%2C Best hit);ORF_evidence=XP_002886339.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735),Molecular Function: rRNA binding (GO:0019843);InterPro=Ribosomal protein S6 (IPR000529),Translation elongation factor EF1B/ribosomal protein S6 (IPR014717);NIAS_FLcDNA=006-209-H08,J023002E21;TENOR=Os03t0843400-01
Chr03	irgsp1_rep	five_prime_UTR	35444425	35444466	.	+	.	Parent=Os03t0843400-01
Chr03	irgsp1_rep	CDS	35444467	35444880	.	+	0	Parent=Os03t0843400-01
Chr03	irgsp1_rep	CDS	35445772	35446017	.	+	0	Parent=Os03t0843400-01
Chr03	irgsp1_rep	three_prime_UTR	35446018	35446363	.	+	.	Parent=Os03t0843400-01
Chr03	irgsp1_rep	mRNA	35446442	35452470	.	-	.	ID=Os03t0843500-01;Name=Os03t0843500-01;Locus_id=Os03g0843500;Note=Similar to Sarcoplasmic reticulum protein (With alternative splicing).;Transcript_evidence=AK101661 (DDBJ%2C Best hit);ORF_evidence=Q2QKC5 (UniProt);InterPro=LUC7-related (IPR004882);NIAS_FLcDNA=J033057K08;Expression=AK101661;TENOR=Os03t0843500-01;KEGG=Os03t0843500-01
Chr03	irgsp1_rep	five_prime_UTR	35452323	35452470	.	-	.	Parent=Os03t0843500-01
Chr03	irgsp1_rep	CDS	35452176	35452322	.	-	0	Parent=Os03t0843500-01
Chr03	irgsp1_rep	CDS	35451877	35451929	.	-	0	Parent=Os03t0843500-01
Chr03	irgsp1_rep	CDS	35451606	35451774	.	-	1	Parent=Os03t0843500-01
Chr03	irgsp1_rep	CDS	35451461	35451524	.	-	0	Parent=Os03t0843500-01
Chr03	irgsp1_rep	CDS	35450387	35450466	.	-	2	Parent=Os03t0843500-01
Chr03	irgsp1_rep	CDS	35450113	35450266	.	-	0	Parent=Os03t0843500-01
Chr03	irgsp1_rep	CDS	35449451	35449512	.	-	2	Parent=Os03t0843500-01
Chr03	irgsp1_rep	CDS	35449187	35449249	.	-	0	Parent=Os03t0843500-01
Chr03	irgsp1_rep	CDS	35448292	35448350	.	-	0	Parent=Os03t0843500-01
Chr03	irgsp1_rep	CDS	35448053	35448191	.	-	1	Parent=Os03t0843500-01
Chr03	irgsp1_rep	three_prime_UTR	35447181	35448052	.	-	.	Parent=Os03t0843500-01
Chr03	irgsp1_rep	three_prime_UTR	35446881	35447105	.	-	.	Parent=Os03t0843500-01
Chr03	irgsp1_rep	three_prime_UTR	35446442	35446707	.	-	.	Parent=Os03t0843500-01
Chr03	irgsp1_rep	mRNA	35447899	35452429	.	-	.	ID=Os03t0843500-02;Name=Os03t0843500-02;Locus_id=Os03g0843500;Note=Similar to Sarcoplasmic reticulum protein (With alternative splicing).;Transcript_evidence=AK067985 (DDBJ%2C Best hit);ORF_evidence=Q2QKC5 (UniProt);InterPro=LUC7-related (IPR004882);NIAS_FLcDNA=J013124N18;Expression=AK067985;TENOR=Os03t0843500-02;KEGG=Os03t0843500-02
Chr03	irgsp1_rep	five_prime_UTR	35452323	35452429	.	-	.	Parent=Os03t0843500-02
Chr03	irgsp1_rep	CDS	35452176	35452322	.	-	0	Parent=Os03t0843500-02
Chr03	irgsp1_rep	CDS	35451877	35451929	.	-	0	Parent=Os03t0843500-02
Chr03	irgsp1_rep	CDS	35451606	35451774	.	-	1	Parent=Os03t0843500-02
Chr03	irgsp1_rep	CDS	35451461	35451524	.	-	0	Parent=Os03t0843500-02
Chr03	irgsp1_rep	CDS	35450387	35450466	.	-	2	Parent=Os03t0843500-02
Chr03	irgsp1_rep	CDS	35450113	35450266	.	-	0	Parent=Os03t0843500-02
Chr03	irgsp1_rep	CDS	35449451	35449512	.	-	2	Parent=Os03t0843500-02
Chr03	irgsp1_rep	CDS	35449187	35449249	.	-	0	Parent=Os03t0843500-02
Chr03	irgsp1_rep	CDS	35448292	35448350	.	-	0	Parent=Os03t0843500-02
Chr03	irgsp1_rep	CDS	35448053	35448191	.	-	1	Parent=Os03t0843500-02
Chr03	irgsp1_rep	three_prime_UTR	35447899	35448052	.	-	.	Parent=Os03t0843500-02
Chr03	irgsp1_rep	mRNA	35453423	35460386	.	+	.	ID=Os03t0843600-01;Name=Os03t0843600-01;Locus_id=Os03g0843600;CGSNL Gene Symbol=CASTOR;CGSNL Gene Name=CASTOR;Oryzabase Gene Symbol Synonym(s)=Os-CASTOR;Oryzabase Gene Name Synonym(s)=Probable ion channel DMI1-like%2C chloroplastic;Note=Ion channel DMI1.%2CCation channen protein.;Transcript_evidence=AK068216 (DDBJ%2C Best hit),AK101493 (DDBJ%2C Best hit);ORF_evidence=Q5H8A6 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=CASTOR/POLLUX/SYM8 ion channels (IPR010420),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013149P17,J033043B07;Oryzabase=8199;TENOR=Os03t0843600-01
Chr03	irgsp1_rep	five_prime_UTR	35453423	35453472	.	+	.	Parent=Os03t0843600-01
Chr03	irgsp1_rep	CDS	35453473	35453898	.	+	0	Parent=Os03t0843600-01
Chr03	irgsp1_rep	CDS	35453982	35454053	.	+	0	Parent=Os03t0843600-01
Chr03	irgsp1_rep	CDS	35454120	35454734	.	+	0	Parent=Os03t0843600-01
Chr03	irgsp1_rep	CDS	35455068	35455250	.	+	0	Parent=Os03t0843600-01
Chr03	irgsp1_rep	CDS	35455419	35455478	.	+	0	Parent=Os03t0843600-01
Chr03	irgsp1_rep	CDS	35455548	35455751	.	+	0	Parent=Os03t0843600-01
Chr03	irgsp1_rep	CDS	35456312	35456560	.	+	0	Parent=Os03t0843600-01
Chr03	irgsp1_rep	CDS	35457575	35457673	.	+	0	Parent=Os03t0843600-01
Chr03	irgsp1_rep	CDS	35458483	35458677	.	+	0	Parent=Os03t0843600-01
Chr03	irgsp1_rep	CDS	35458796	35458888	.	+	0	Parent=Os03t0843600-01
Chr03	irgsp1_rep	CDS	35459080	35459346	.	+	0	Parent=Os03t0843600-01
Chr03	irgsp1_rep	CDS	35459699	35459917	.	+	0	Parent=Os03t0843600-01
Chr03	irgsp1_rep	three_prime_UTR	35459918	35460386	.	+	.	Parent=Os03t0843600-01
Chr03	irgsp1_rep	mRNA	35462177	35466386	.	+	.	ID=Os03t0843700-01;Name=Os03t0843700-01;Locus_id=Os03g0843700;Note=FAR1 domain containing protein.;Transcript_evidence=AK070364 (DDBJ%2C Best hit);ORF_evidence=A3APM9 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=FAR1 DNA binding domain (IPR004330),Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527),AT hook%2C DNA-binding motif (IPR017956),MULE transposase domain (IPR018289);NIAS_FLcDNA=J023050I08;Expression=AK070364;TENOR=Os03t0843700-01;KEGG=Os03t0843700-01
Chr03	irgsp1_rep	five_prime_UTR	35462177	35462354	.	+	.	Parent=Os03t0843700-01
Chr03	irgsp1_rep	CDS	35462355	35464400	.	+	0	Parent=Os03t0843700-01
Chr03	irgsp1_rep	CDS	35464478	35464588	.	+	0	Parent=Os03t0843700-01
Chr03	irgsp1_rep	CDS	35464682	35464786	.	+	0	Parent=Os03t0843700-01
Chr03	irgsp1_rep	CDS	35464891	35464956	.	+	0	Parent=Os03t0843700-01
Chr03	irgsp1_rep	CDS	35465065	35465097	.	+	0	Parent=Os03t0843700-01
Chr03	irgsp1_rep	three_prime_UTR	35465098	35465135	.	+	.	Parent=Os03t0843700-01
Chr03	irgsp1_rep	three_prime_UTR	35466030	35466386	.	+	.	Parent=Os03t0843700-01
Chr03	irgsp1_rep	mRNA	35467632	35469813	.	+	.	ID=Os03t0843800-00;Name=Os03t0843800-00;Locus_id=Os03g0843800;Oryzabase Gene Symbol Synonym(s)=OsHOL1;Oryzabase Gene Name Synonym(s)=HARMLESS TO OZONE LAYER 1;Note=Methyl chloride transferase.;Transcript_evidence=CT835256 (DDBJ%2C Best hit);ORF_evidence=Q10AR3 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Cellular Component: cytoplasm (GO:0005737),Molecular Function: thiopurine S-methyltransferase activity (GO:0008119);InterPro=Thiopurine S-methyltransferase (IPR008854);Oryzabase=11278;TENOR=Os03t0843800-00;KEGG=Os03t0843800-00
Chr03	irgsp1_rep	five_prime_UTR	35467632	35467672	.	+	.	Parent=Os03t0843800-00
Chr03	irgsp1_rep	CDS	35467673	35467927	.	+	0	Parent=Os03t0843800-00
Chr03	irgsp1_rep	CDS	35468116	35468205	.	+	0	Parent=Os03t0843800-00
Chr03	irgsp1_rep	CDS	35468290	35468411	.	+	0	Parent=Os03t0843800-00
Chr03	irgsp1_rep	CDS	35468546	35468645	.	+	1	Parent=Os03t0843800-00
Chr03	irgsp1_rep	CDS	35468770	35468816	.	+	0	Parent=Os03t0843800-00
Chr03	irgsp1_rep	CDS	35468993	35469071	.	+	1	Parent=Os03t0843800-00
Chr03	irgsp1_rep	CDS	35469537	35469584	.	+	0	Parent=Os03t0843800-00
Chr03	irgsp1_rep	three_prime_UTR	35469585	35469813	.	+	.	Parent=Os03t0843800-00
Chr03	irgsp1_rep	mRNA	35470133	35474014	.	-	.	ID=Os03t0843900-01;Name=Os03t0843900-01;Locus_id=Os03g0843900;Note=Similar to Glycohydrolase family protein%2C expressed.;Transcript_evidence=AK068101 (DDBJ%2C Best hit);ORF_evidence=Q10AR2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: poly(ADP-ribose) glycohydrolase activity (GO:0004649);InterPro=Poly(ADP-ribose) glycohydrolase (IPR007724);NIAS_FLcDNA=J013129K10;TENOR=Os03t0843900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	35473956	35474014	.	-	.	Parent=Os03t0843900-01
Chr03	irgsp1_rep	CDS	35473435	35473955	.	-	0	Parent=Os03t0843900-01
Chr03	irgsp1_rep	CDS	35473116	35473320	.	-	1	Parent=Os03t0843900-01
Chr03	irgsp1_rep	CDS	35472878	35472880	.	-	0	Parent=Os03t0843900-01
Chr03	irgsp1_rep	three_prime_UTR	35472773	35472877	.	-	.	Parent=Os03t0843900-01
Chr03	irgsp1_rep	three_prime_UTR	35472338	35472456	.	-	.	Parent=Os03t0843900-01
Chr03	irgsp1_rep	three_prime_UTR	35472033	35472176	.	-	.	Parent=Os03t0843900-01
Chr03	irgsp1_rep	three_prime_UTR	35471802	35471871	.	-	.	Parent=Os03t0843900-01
Chr03	irgsp1_rep	three_prime_UTR	35471301	35471438	.	-	.	Parent=Os03t0843900-01
Chr03	irgsp1_rep	three_prime_UTR	35471147	35471209	.	-	.	Parent=Os03t0843900-01
Chr03	irgsp1_rep	three_prime_UTR	35470133	35470448	.	-	.	Parent=Os03t0843900-01
Chr03	irgsp1_rep	mRNA	35474092	35479958	.	+	.	ID=Os03t0844000-01;Name=Os03t0844000-01;Locus_id=Os03g0844000;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK065633 (DDBJ%2C Best hit);ORF_evidence=B9F7J4 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013031L22;Expression=AK065633;TENOR=Os03t0844000-01;KEGG=Os03t0844000-01
Chr03	irgsp1_rep	five_prime_UTR	35474092	35474092	.	+	.	Parent=Os03t0844000-01
Chr03	irgsp1_rep	CDS	35474093	35476201	.	+	0	Parent=Os03t0844000-01
Chr03	irgsp1_rep	three_prime_UTR	35476202	35476621	.	+	.	Parent=Os03t0844000-01
Chr03	irgsp1_rep	three_prime_UTR	35476721	35476822	.	+	.	Parent=Os03t0844000-01
Chr03	irgsp1_rep	three_prime_UTR	35476916	35477046	.	+	.	Parent=Os03t0844000-01
Chr03	irgsp1_rep	three_prime_UTR	35477130	35477399	.	+	.	Parent=Os03t0844000-01
Chr03	irgsp1_rep	three_prime_UTR	35477580	35477758	.	+	.	Parent=Os03t0844000-01
Chr03	irgsp1_rep	three_prime_UTR	35478044	35478356	.	+	.	Parent=Os03t0844000-01
Chr03	irgsp1_rep	three_prime_UTR	35478458	35478589	.	+	.	Parent=Os03t0844000-01
Chr03	irgsp1_rep	three_prime_UTR	35478701	35478824	.	+	.	Parent=Os03t0844000-01
Chr03	irgsp1_rep	three_prime_UTR	35478909	35479184	.	+	.	Parent=Os03t0844000-01
Chr03	irgsp1_rep	three_prime_UTR	35479279	35479573	.	+	.	Parent=Os03t0844000-01
Chr03	irgsp1_rep	three_prime_UTR	35479679	35479958	.	+	.	Parent=Os03t0844000-01
Chr03	irgsp1_rep	mRNA	35474982	35476257	.	+	.	ID=Os03t0844000-02;Name=Os03t0844000-02;Locus_id=Os03g0844000;Note=Hypothetical conserved gene.;Transcript_evidence=AK059033 (DDBJ%2C Best hit);ORF_evidence=B9F7J4 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-021-C06;Expression=AK059033;TENOR=Os03t0844000-02;KEGG=Os03t0844000-02
Chr03	irgsp1_rep	five_prime_UTR	35474982	35474983	.	+	.	Parent=Os03t0844000-02
Chr03	irgsp1_rep	CDS	35474984	35476201	.	+	0	Parent=Os03t0844000-02
Chr03	irgsp1_rep	three_prime_UTR	35476202	35476257	.	+	.	Parent=Os03t0844000-02
Chr03	irgsp1_rep	mRNA	35480204	35480405	.	+	.	ID=Os03t0844050-00;Name=Os03t0844050-00;Locus_id=Os03g0844050;Note=Hypothetical conserved gene.;Transcript_evidence=EU943492 (DDBJ);ORF_evidence=B6TW49 (UniProt);TENOR=Os03t0844050-00;KEGG=Os03t0844050-00
Chr03	irgsp1_rep	five_prime_UTR	35480204	35480244	.	+	.	Parent=Os03t0844050-00
Chr03	irgsp1_rep	CDS	35480245	35480385	.	+	0	Parent=Os03t0844050-00
Chr03	irgsp1_rep	three_prime_UTR	35480386	35480405	.	+	.	Parent=Os03t0844050-00
Chr03	irgsp1_rep	mRNA	35480696	35486307	.	-	.	ID=Os03t0844100-01;Name=Os03t0844100-01;Locus_id=Os03g0844100;CGSNL Gene Symbol=RLCK123;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 123;Oryzabase Gene Symbol Synonym(s)=OsRLCK123;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 123;Note=Similar to Pti1 kinase-like protein.;Transcript_evidence=AK067164 (DDBJ%2C Best hit);ORF_evidence=B4FW61 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Tyrosine-protein kinase%2C active site (IPR008266),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013094N20;Oryzabase=18829;Expression=AK067164;TENOR=Os03t0844100-01;KEGG=Os03t0844100-01
Chr03	irgsp1_rep	five_prime_UTR	35486095	35486307	.	-	.	Parent=Os03t0844100-01
Chr03	irgsp1_rep	five_prime_UTR	35485588	35485611	.	-	.	Parent=Os03t0844100-01
Chr03	irgsp1_rep	CDS	35485497	35485587	.	-	0	Parent=Os03t0844100-01
Chr03	irgsp1_rep	CDS	35484757	35485004	.	-	2	Parent=Os03t0844100-01
Chr03	irgsp1_rep	CDS	35484502	35484628	.	-	0	Parent=Os03t0844100-01
Chr03	irgsp1_rep	CDS	35484146	35484419	.	-	2	Parent=Os03t0844100-01
Chr03	irgsp1_rep	CDS	35482134	35482266	.	-	1	Parent=Os03t0844100-01
Chr03	irgsp1_rep	CDS	35481276	35481362	.	-	0	Parent=Os03t0844100-01
Chr03	irgsp1_rep	CDS	35480992	35481138	.	-	0	Parent=Os03t0844100-01
Chr03	irgsp1_rep	three_prime_UTR	35480696	35480991	.	-	.	Parent=Os03t0844100-01
Chr03	irgsp1_rep	mRNA	35482594	35483169	.	-	.	ID=Os03t0844301-00;Name=Os03t0844301-00;Locus_id=Os03g0844301;Note=Hypothetical gene.;Transcript_evidence=CT835264 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os03t0844301-00;KEGG=Os03t0844301-00
Chr03	irgsp1_rep	five_prime_UTR	35483012	35483169	.	-	.	Parent=Os03t0844301-00
Chr03	irgsp1_rep	CDS	35482787	35483011	.	-	0	Parent=Os03t0844301-00
Chr03	irgsp1_rep	three_prime_UTR	35482594	35482786	.	-	.	Parent=Os03t0844301-00
Chr03	irgsp1_rep	mRNA	35494074	35497692	.	+	.	ID=Os03t0844450-01;Name=Os03t0844450-01;Locus_id=Os03g0844450;Note=Similar to 3' exoribonuclease family domain 1-containing protein.;Transcript_evidence=AK241067 (DDBJ%2C Best hit);ORF_evidence=NP_194479.2 (RefSeq);GO=Biological Process: RNA processing (GO:0006396),Molecular Function: RNA binding (GO:0003723);InterPro=Exoribonuclease%2C phosphorolytic domain 1 (IPR001247),Exoribonuclease%2C phosphorolytic domain 2 (IPR015847),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=J065066D11;TENOR=Os03t0844450-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	35494074	35494306	.	+	.	Parent=Os03t0844450-01
Chr03	irgsp1_rep	CDS	35494307	35494460	.	+	0	Parent=Os03t0844450-01
Chr03	irgsp1_rep	CDS	35495557	35495635	.	+	2	Parent=Os03t0844450-01
Chr03	irgsp1_rep	CDS	35496306	35496408	.	+	1	Parent=Os03t0844450-01
Chr03	irgsp1_rep	CDS	35496510	35496630	.	+	0	Parent=Os03t0844450-01
Chr03	irgsp1_rep	CDS	35496959	35497047	.	+	2	Parent=Os03t0844450-01
Chr03	irgsp1_rep	CDS	35497139	35497288	.	+	0	Parent=Os03t0844450-01
Chr03	irgsp1_rep	CDS	35497369	35497455	.	+	0	Parent=Os03t0844450-01
Chr03	irgsp1_rep	three_prime_UTR	35497456	35497692	.	+	.	Parent=Os03t0844450-01
Chr03	irgsp1_rep	mRNA	35498877	35503469	.	+	.	ID=Os03t0844500-01;Name=Os03t0844500-01;Locus_id=Os03g0844500;CGSNL Gene Symbol=PP2A-B'ZETA;CGSNL Gene Name=PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' ZETA;Oryzabase Gene Symbol Synonym(s)=OsPP2A-B'zeta%2C OsB'zeta;Oryzabase Gene Name Synonym(s)=protein phosphatase 2A B'zeta subunit;Note=Similar to Protein phosphatase 2A B' regulatory subunit.;Transcript_evidence=AK070337 (DDBJ%2C Best hit);ORF_evidence=NP_001105904.1 (RefSeq);GO=Biological Process: signal transduction (GO:0007165),Cellular Component: protein phosphatase type 2A complex (GO:0000159),Molecular Function: binding (GO:0005488),Molecular Function: protein phosphatase type 2A regulator activity (GO:0008601);InterPro=Protein phosphatase 2A%2C regulatory B subunit%2C B56 (IPR002554),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023047K16;Oryzabase=13914;Expression=AK070337;TENOR=Os03t0844500-01;KEGG=Os03t0844500-01
Chr03	irgsp1_rep	five_prime_UTR	35498877	35499006	.	+	.	Parent=Os03t0844500-01
Chr03	irgsp1_rep	five_prime_UTR	35499124	35499355	.	+	.	Parent=Os03t0844500-01
Chr03	irgsp1_rep	five_prime_UTR	35499570	35499764	.	+	.	Parent=Os03t0844500-01
Chr03	irgsp1_rep	CDS	35499765	35500958	.	+	0	Parent=Os03t0844500-01
Chr03	irgsp1_rep	CDS	35502602	35502961	.	+	0	Parent=Os03t0844500-01
Chr03	irgsp1_rep	three_prime_UTR	35502962	35502976	.	+	.	Parent=Os03t0844500-01
Chr03	irgsp1_rep	three_prime_UTR	35503058	35503469	.	+	.	Parent=Os03t0844500-01
Chr03	irgsp1_rep	mRNA	35503128	35504493	.	+	.	ID=Os03t0844500-02;Name=Os03t0844500-02;Locus_id=Os03g0844500;CGSNL Gene Symbol=PP2A-B'ZETA;CGSNL Gene Name=PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' ZETA;Oryzabase Gene Symbol Synonym(s)=OsPP2A-B'zeta%2C OsB'zeta;Oryzabase Gene Name Synonym(s)=protein phosphatase 2A B'zeta subunit;Note=Hypothetical gene.;Transcript_evidence=AK108050 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-137-G04;Oryzabase=13914;Expression=AK108050;TENOR=Os03t0844500-02;KEGG=Os03t0844500-02
Chr03	irgsp1_rep	five_prime_UTR	35503128	35503798	.	+	.	Parent=Os03t0844500-02
Chr03	irgsp1_rep	CDS	35503799	35504275	.	+	0	Parent=Os03t0844500-02
Chr03	irgsp1_rep	three_prime_UTR	35504276	35504493	.	+	.	Parent=Os03t0844500-02
Chr03	irgsp1_rep	mRNA	35503543	35506823	.	-	.	ID=Os03t0844600-01;Name=Os03t0844600-01;Locus_id=Os03g0844600;CGSNL Gene Symbol=GELP54;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 54;Oryzabase Gene Symbol Synonym(s)=OsGELP54;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 54;Note=Esterase%2C SGNH hydrolase-type domain containing protein.;Transcript_evidence=AK059168 (DDBJ%2C Best hit);ORF_evidence=XP_002875905.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087),Esterase%2C SGNH hydrolase-type (IPR013830),Esterase%2C SGNH hydrolase-type%2C subgroup (IPR013831);NIAS_FLcDNA=001-023-E06;Oryzabase=11004;Expression=AK059168;TENOR=Os03t0844600-01;KEGG=Os03t0844600-01
Chr03	irgsp1_rep	five_prime_UTR	35506771	35506823	.	-	.	Parent=Os03t0844600-01
Chr03	irgsp1_rep	CDS	35506180	35506770	.	-	0	Parent=Os03t0844600-01
Chr03	irgsp1_rep	CDS	35503811	35504323	.	-	0	Parent=Os03t0844600-01
Chr03	irgsp1_rep	three_prime_UTR	35503543	35503810	.	-	.	Parent=Os03t0844600-01
Chr03	irgsp1_rep	mRNA	35503674	35504258	.	-	.	ID=Os03t0844600-02;Name=Os03t0844600-02;Locus_id=Os03g0844600;CGSNL Gene Symbol=GELP54;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 54;Oryzabase Gene Symbol Synonym(s)=OsGELP54;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 54;Note=Similar to predicted protein.;Transcript_evidence=AK103825 (DDBJ%2C Best hit);ORF_evidence=XP_002875905.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=J033147L02;Oryzabase=11004;Expression=AK103825;TENOR=Os03t0844600-02;KEGG=Os03t0844600-02
Chr03	irgsp1_rep	five_prime_UTR	35504258	35504258	.	-	.	Parent=Os03t0844600-02
Chr03	irgsp1_rep	CDS	35503811	35504257	.	-	0	Parent=Os03t0844600-02
Chr03	irgsp1_rep	three_prime_UTR	35503674	35503810	.	-	.	Parent=Os03t0844600-02
Chr03	irgsp1_rep	mRNA	35514006	35517366	.	+	.	ID=Os03t0844700-01;Name=Os03t0844700-01;Locus_id=Os03g0844700;Note=Similar to ALBINO3-like protein 1%2C chloroplastic.;Transcript_evidence=AK242787 (DDBJ%2C Best hit);ORF_evidence=NP_173858.5 (RefSeq);GO=Biological Process: protein insertion into membrane (GO:0051205),Cellular Component: integral to membrane (GO:0016021);InterPro=Membrane insertion protein%2C OxaA/YidC (IPR001708);NIAS_FLcDNA=J090056L22;TENOR=Os03t0844700-01;KEGG=Os03t0844700-01
Chr03	irgsp1_rep	five_prime_UTR	35514006	35514006	.	+	.	Parent=Os03t0844700-01
Chr03	irgsp1_rep	CDS	35514007	35514040	.	+	0	Parent=Os03t0844700-01
Chr03	irgsp1_rep	CDS	35514221	35514294	.	+	2	Parent=Os03t0844700-01
Chr03	irgsp1_rep	CDS	35514379	35514483	.	+	0	Parent=Os03t0844700-01
Chr03	irgsp1_rep	CDS	35514914	35515021	.	+	0	Parent=Os03t0844700-01
Chr03	irgsp1_rep	CDS	35515419	35515522	.	+	0	Parent=Os03t0844700-01
Chr03	irgsp1_rep	CDS	35515820	35516038	.	+	1	Parent=Os03t0844700-01
Chr03	irgsp1_rep	CDS	35516320	35516461	.	+	1	Parent=Os03t0844700-01
Chr03	irgsp1_rep	CDS	35516548	35516640	.	+	0	Parent=Os03t0844700-01
Chr03	irgsp1_rep	CDS	35516777	35516881	.	+	0	Parent=Os03t0844700-01
Chr03	irgsp1_rep	three_prime_UTR	35516882	35517366	.	+	.	Parent=Os03t0844700-01
Chr03	irgsp1_rep	mRNA	35516728	35518031	.	-	.	ID=Os03t0844800-01;Name=Os03t0844800-01;Locus_id=Os03g0844800;Note=Conserved hypothetical protein.;Transcript_evidence=AK071813 (DDBJ%2C Best hit);ORF_evidence=XP_002459703.1 (RefSeq);NIAS_FLcDNA=J023114B14;Expression=AK071813;TENOR=Os03t0844800-01;KEGG=Os03t0844800-01
Chr03	irgsp1_rep	five_prime_UTR	35517895	35518031	.	-	.	Parent=Os03t0844800-01
Chr03	irgsp1_rep	CDS	35517547	35517894	.	-	0	Parent=Os03t0844800-01
Chr03	irgsp1_rep	three_prime_UTR	35516728	35517546	.	-	.	Parent=Os03t0844800-01
Chr03	irgsp1_rep	mRNA	35519094	35520005	.	-	.	ID=Os03t0844850-00;Name=Os03t0844850-00;Locus_id=Os03g0844850;Note=Conserved hypothetical protein.;Transcript_evidence=AK364041 (DDBJ);ORF_evidence=Q75LC2 (UniProt);TENOR=Os03t0844850-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	35519979	35520005	.	-	.	Parent=Os03t0844850-00
Chr03	irgsp1_rep	CDS	35519094	35519978	.	-	0	Parent=Os03t0844850-00
Chr03	irgsp1_rep	mRNA	35520662	35523897	.	-	.	ID=Os03t0844900-01;Name=Os03t0844900-01;Locus_id=Os03g0844900;Note=Nucleic acid-binding%2C OB-fold-like domain containing protein.;Transcript_evidence=AK100284 (DDBJ%2C Best hit);ORF_evidence=NP_001151317.1 (RefSeq);GO=Molecular Function: RNA binding (GO:0003723);InterPro=Ribosomal protein S1%2C RNA-binding domain (IPR003029),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),RNA-binding domain%2C S1 (IPR022967);NIAS_FLcDNA=J023075D13;Expression=AK100284;TENOR=Os03t0844900-01;KEGG=Os03t0844900-01
Chr03	irgsp1_rep	five_prime_UTR	35523837	35523897	.	-	.	Parent=Os03t0844900-01
Chr03	irgsp1_rep	CDS	35523609	35523836	.	-	0	Parent=Os03t0844900-01
Chr03	irgsp1_rep	CDS	35523363	35523522	.	-	0	Parent=Os03t0844900-01
Chr03	irgsp1_rep	CDS	35523150	35523211	.	-	2	Parent=Os03t0844900-01
Chr03	irgsp1_rep	CDS	35522636	35522795	.	-	0	Parent=Os03t0844900-01
Chr03	irgsp1_rep	CDS	35522436	35522556	.	-	2	Parent=Os03t0844900-01
Chr03	irgsp1_rep	CDS	35521898	35521979	.	-	1	Parent=Os03t0844900-01
Chr03	irgsp1_rep	CDS	35521602	35521808	.	-	0	Parent=Os03t0844900-01
Chr03	irgsp1_rep	three_prime_UTR	35521436	35521601	.	-	.	Parent=Os03t0844900-01
Chr03	irgsp1_rep	three_prime_UTR	35521301	35521351	.	-	.	Parent=Os03t0844900-01
Chr03	irgsp1_rep	three_prime_UTR	35520662	35521020	.	-	.	Parent=Os03t0844900-01
Chr03	irgsp1_rep	mRNA	35524251	35526214	.	-	.	ID=Os03t0845000-01;Name=Os03t0845000-01;Locus_id=Os03g0845000;CGSNL Gene Symbol=PRN;CGSNL Gene Name=PIRIN;Oryzabase Gene Symbol Synonym(s)=OsPRN;Oryzabase Gene Name Synonym(s)=OsPIRIN%2C pirin-like protein;Note=Similar to Pirin-like protein.;Transcript_evidence=AK105971 (DDBJ%2C Best hit);ORF_evidence=B6TZU6 (UniProt);InterPro=Pirin%2C N-terminal (IPR003829),Pirin%2C C-terminal (IPR008778),Cupin%2C RmlC-type (IPR011051),Pirin (IPR012093),RmlC-like jelly roll fold (IPR014710);NIAS_FLcDNA=001-205-F02;Oryzabase=22777;Expression=AK105971;TENOR=Os03t0845000-01;KEGG=Os03t0845000-01
Chr03	irgsp1_rep	five_prime_UTR	35526161	35526214	.	-	.	Parent=Os03t0845000-01
Chr03	irgsp1_rep	CDS	35526013	35526160	.	-	0	Parent=Os03t0845000-01
Chr03	irgsp1_rep	CDS	35525754	35525919	.	-	2	Parent=Os03t0845000-01
Chr03	irgsp1_rep	CDS	35525592	35525641	.	-	1	Parent=Os03t0845000-01
Chr03	irgsp1_rep	CDS	35525434	35525501	.	-	2	Parent=Os03t0845000-01
Chr03	irgsp1_rep	CDS	35525276	35525338	.	-	0	Parent=Os03t0845000-01
Chr03	irgsp1_rep	CDS	35525032	35525135	.	-	0	Parent=Os03t0845000-01
Chr03	irgsp1_rep	CDS	35524455	35524941	.	-	1	Parent=Os03t0845000-01
Chr03	irgsp1_rep	three_prime_UTR	35524251	35524454	.	-	.	Parent=Os03t0845000-01
Chr03	irgsp1_rep	mRNA	35543739	35546969	.	-	.	ID=Os03t0845300-01;Name=Os03t0845300-01;Locus_id=Os03g0845300;Note=Hypothetical conserved gene.;Transcript_evidence=AK240633 (DDBJ%2C Best hit);ORF_evidence=Q75LB5 (UniProt);NIAS_FLcDNA=002-106-A06_2;TENOR=Os03t0845300-01;KEGG=Os03t0845300-01
Chr03	irgsp1_rep	five_prime_UTR	35546849	35546969	.	-	.	Parent=Os03t0845300-01
Chr03	irgsp1_rep	CDS	35546704	35546848	.	-	0	Parent=Os03t0845300-01
Chr03	irgsp1_rep	CDS	35545541	35546036	.	-	2	Parent=Os03t0845300-01
Chr03	irgsp1_rep	CDS	35545270	35545447	.	-	1	Parent=Os03t0845300-01
Chr03	irgsp1_rep	CDS	35544969	35545175	.	-	0	Parent=Os03t0845300-01
Chr03	irgsp1_rep	CDS	35544618	35544826	.	-	0	Parent=Os03t0845300-01
Chr03	irgsp1_rep	CDS	35543924	35544407	.	-	1	Parent=Os03t0845300-01
Chr03	irgsp1_rep	three_prime_UTR	35543739	35543923	.	-	.	Parent=Os03t0845300-01
Chr03	irgsp1_rep	mRNA	35543812	35544507	.	-	.	ID=Os03t0845300-02;Name=Os03t0845300-02;Locus_id=Os03g0845300;Note=Hypothetical conserved gene.;Transcript_evidence=AK242549 (DDBJ%2C Best hit);ORF_evidence=NP_001173713.1 (RefSeq);NIAS_FLcDNA=J080319C20;TENOR=Os03t0845300-02;KEGG=Os03t0845300-02
Chr03	irgsp1_rep	five_prime_UTR	35544506	35544507	.	-	.	Parent=Os03t0845300-02
Chr03	irgsp1_rep	CDS	35543924	35544505	.	-	0	Parent=Os03t0845300-02
Chr03	irgsp1_rep	three_prime_UTR	35543812	35543923	.	-	.	Parent=Os03t0845300-02
Chr03	irgsp1_rep	mRNA	35549181	35558048	.	-	.	ID=Os03t0845500-01;Name=Os03t0845500-01;Locus_id=Os03g0845500;Note=Similar to Acyl-CoA synthetase-like protein.;Transcript_evidence=AK073441 (DDBJ%2C Best hit);ORF_evidence=Q8LRT1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873),AMP-binding%2C conserved site (IPR020845);NIAS_FLcDNA=J033044E24;Expression=AK073441;TENOR=Os03t0845500-01;KEGG=Os03t0845500-01 (EC:6.2.1.3)
Chr03	irgsp1_rep	five_prime_UTR	35557861	35558048	.	-	.	Parent=Os03t0845500-01
Chr03	irgsp1_rep	CDS	35557624	35557860	.	-	0	Parent=Os03t0845500-01
Chr03	irgsp1_rep	CDS	35556898	35557089	.	-	0	Parent=Os03t0845500-01
Chr03	irgsp1_rep	CDS	35556180	35556294	.	-	0	Parent=Os03t0845500-01
Chr03	irgsp1_rep	CDS	35555933	35556020	.	-	2	Parent=Os03t0845500-01
Chr03	irgsp1_rep	CDS	35554966	35555177	.	-	1	Parent=Os03t0845500-01
Chr03	irgsp1_rep	CDS	35554216	35554334	.	-	2	Parent=Os03t0845500-01
Chr03	irgsp1_rep	CDS	35553891	35554040	.	-	0	Parent=Os03t0845500-01
Chr03	irgsp1_rep	CDS	35553430	35553497	.	-	0	Parent=Os03t0845500-01
Chr03	irgsp1_rep	CDS	35553007	35553112	.	-	1	Parent=Os03t0845500-01
Chr03	irgsp1_rep	CDS	35552644	35552802	.	-	0	Parent=Os03t0845500-01
Chr03	irgsp1_rep	CDS	35552455	35552508	.	-	0	Parent=Os03t0845500-01
Chr03	irgsp1_rep	CDS	35552302	35552382	.	-	0	Parent=Os03t0845500-01
Chr03	irgsp1_rep	CDS	35551346	35551483	.	-	0	Parent=Os03t0845500-01
Chr03	irgsp1_rep	CDS	35550731	35550890	.	-	0	Parent=Os03t0845500-01
Chr03	irgsp1_rep	CDS	35550439	35550518	.	-	2	Parent=Os03t0845500-01
Chr03	irgsp1_rep	CDS	35550028	35550170	.	-	0	Parent=Os03t0845500-01
Chr03	irgsp1_rep	CDS	35549629	35549686	.	-	1	Parent=Os03t0845500-01
Chr03	irgsp1_rep	CDS	35549454	35549546	.	-	0	Parent=Os03t0845500-01
Chr03	irgsp1_rep	three_prime_UTR	35549181	35549453	.	-	.	Parent=Os03t0845500-01
Chr03	irgsp1_rep	mRNA	35558704	35561180	.	-	.	ID=Os03t0845600-01;Name=Os03t0845600-01;Locus_id=Os03g0845600;Note=Glycoside hydrolase%2C family 17 protein.;Transcript_evidence=AK109814 (DDBJ%2C Best hit);ORF_evidence=NP_001149815.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=002-147-H05;Expression=AK109814;TENOR=Os03t0845600-01;KEGG=Os03t0845600-01
Chr03	irgsp1_rep	CDS	35559797	35561180	.	-	0	Parent=Os03t0845600-01
Chr03	irgsp1_rep	CDS	35558910	35558950	.	-	2	Parent=Os03t0845600-01
Chr03	irgsp1_rep	three_prime_UTR	35558704	35558909	.	-	.	Parent=Os03t0845600-01
Chr03	irgsp1_rep	mRNA	35562952	35565070	.	-	.	ID=Os03t0845700-01;Name=Os03t0845700-01;Locus_id=Os03g0845700;Note=Similar to RPB17 (Fragment).;Transcript_evidence=AK062622 (DDBJ%2C Best hit);ORF_evidence=B4FPA6 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351);InterPro=RNA polymerase%2C Rpb8 (IPR005570),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=001-105-B10;Expression=AK062622;TENOR=Os03t0845700-01;KEGG=Os03t0845700-01
Chr03	irgsp1_rep	five_prime_UTR	35564992	35565070	.	-	.	Parent=Os03t0845700-01
Chr03	irgsp1_rep	five_prime_UTR	35564787	35564801	.	-	.	Parent=Os03t0845700-01
Chr03	irgsp1_rep	CDS	35564714	35564786	.	-	0	Parent=Os03t0845700-01
Chr03	irgsp1_rep	CDS	35564026	35564183	.	-	2	Parent=Os03t0845700-01
Chr03	irgsp1_rep	CDS	35563729	35563832	.	-	0	Parent=Os03t0845700-01
Chr03	irgsp1_rep	CDS	35563079	35563190	.	-	1	Parent=Os03t0845700-01
Chr03	irgsp1_rep	three_prime_UTR	35562952	35563078	.	-	.	Parent=Os03t0845700-01
Chr03	irgsp1_rep	mRNA	35566206	35568296	.	-	.	ID=Os03t0845800-01;Name=Os03t0845800-01;Locus_id=Os03g0845800;Note=Conserved hypothetical protein.;Transcript_evidence=AK109563 (DDBJ%2C Best hit);ORF_evidence=Q75LB0 (UniProt);NIAS_FLcDNA=002-129-A07;Expression=AK109563;TENOR=Os03t0845800-01;KEGG=Os03t0845800-01
Chr03	irgsp1_rep	five_prime_UTR	35568281	35568296	.	-	.	Parent=Os03t0845800-01
Chr03	irgsp1_rep	CDS	35567990	35568280	.	-	0	Parent=Os03t0845800-01
Chr03	irgsp1_rep	three_prime_UTR	35567963	35567989	.	-	.	Parent=Os03t0845800-01
Chr03	irgsp1_rep	three_prime_UTR	35567192	35567443	.	-	.	Parent=Os03t0845800-01
Chr03	irgsp1_rep	three_prime_UTR	35566742	35566827	.	-	.	Parent=Os03t0845800-01
Chr03	irgsp1_rep	three_prime_UTR	35566206	35566611	.	-	.	Parent=Os03t0845800-01
Chr03	irgsp1_rep	mRNA	35565837	35568241	.	-	.	ID=Os03t0845800-02;Name=Os03t0845800-02;Locus_id=Os03g0845800;Note=Conserved hypothetical protein.;Transcript_evidence=AK109535 (DDBJ%2C Best hit);ORF_evidence=B8AN91 (UniProt);NIAS_FLcDNA=002-119-C10;TENOR=Os03t0845800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	35567963	35568241	.	-	.	Parent=Os03t0845800-02
Chr03	irgsp1_rep	five_prime_UTR	35567288	35567443	.	-	.	Parent=Os03t0845800-02
Chr03	irgsp1_rep	CDS	35567192	35567287	.	-	0	Parent=Os03t0845800-02
Chr03	irgsp1_rep	CDS	35566742	35566840	.	-	0	Parent=Os03t0845800-02
Chr03	irgsp1_rep	CDS	35566133	35566162	.	-	0	Parent=Os03t0845800-02
Chr03	irgsp1_rep	three_prime_UTR	35565837	35566132	.	-	.	Parent=Os03t0845800-02
Chr03	irgsp1_rep	mRNA	35574028	35574515	.	-	.	ID=Os03t0846200-00;Name=Os03t0846200-00;Locus_id=Os03g0846200;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001051882.1 (RefSeq);TENOR=Os03t0846200-00
Chr03	irgsp1_rep	CDS	35574504	35574515	.	-	0	Parent=Os03t0846200-00
Chr03	irgsp1_rep	CDS	35574028	35574405	.	-	0	Parent=Os03t0846200-00
Chr03	irgsp1_rep	mRNA	35589787	35596069	.	+	.	ID=Os03t0846400-01;Name=Os03t0846400-01;Locus_id=Os03g0846400;Note=Peptidase%2C trypsin-like serine and cysteine domain containing protein.;Transcript_evidence=AK070549 (DDBJ%2C Best hit),AK067706 (DDBJ%2C Best hit);ORF_evidence=B8AN99 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Peptidase cysteine/serine%2C trypsin-like (IPR009003);NIAS_FLcDNA=J023057D01,J013116E14;TENOR=Os03t0846400-01
Chr03	irgsp1_rep	five_prime_UTR	35589787	35589933	.	+	.	Parent=Os03t0846400-01
Chr03	irgsp1_rep	CDS	35589934	35589976	.	+	0	Parent=Os03t0846400-01
Chr03	irgsp1_rep	CDS	35591554	35591679	.	+	2	Parent=Os03t0846400-01
Chr03	irgsp1_rep	CDS	35591762	35591863	.	+	2	Parent=Os03t0846400-01
Chr03	irgsp1_rep	CDS	35591955	35592085	.	+	2	Parent=Os03t0846400-01
Chr03	irgsp1_rep	CDS	35592169	35592438	.	+	0	Parent=Os03t0846400-01
Chr03	irgsp1_rep	CDS	35592610	35592788	.	+	0	Parent=Os03t0846400-01
Chr03	irgsp1_rep	CDS	35593888	35593931	.	+	1	Parent=Os03t0846400-01
Chr03	irgsp1_rep	CDS	35594116	35594199	.	+	2	Parent=Os03t0846400-01
Chr03	irgsp1_rep	CDS	35594287	35594403	.	+	2	Parent=Os03t0846400-01
Chr03	irgsp1_rep	CDS	35594494	35594618	.	+	2	Parent=Os03t0846400-01
Chr03	irgsp1_rep	CDS	35594698	35594970	.	+	0	Parent=Os03t0846400-01
Chr03	irgsp1_rep	CDS	35595068	35595201	.	+	0	Parent=Os03t0846400-01
Chr03	irgsp1_rep	CDS	35595333	35595419	.	+	1	Parent=Os03t0846400-01
Chr03	irgsp1_rep	CDS	35595529	35595646	.	+	1	Parent=Os03t0846400-01
Chr03	irgsp1_rep	three_prime_UTR	35595647	35596069	.	+	.	Parent=Os03t0846400-01
Chr03	irgsp1_rep	mRNA	35606676	35607866	.	-	.	ID=Os03t0846900-01;Name=Os03t0846900-01;Locus_id=Os03g0846900;Note=Conserved hypothetical protein.;Transcript_evidence=AK059297 (DDBJ%2C Best hit);ORF_evidence=A2XP13 (UniProt);NIAS_FLcDNA=001-025-E11;TENOR=Os03t0846900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	35607793	35607866	.	-	.	Parent=Os03t0846900-01
Chr03	irgsp1_rep	CDS	35607750	35607792	.	-	0	Parent=Os03t0846900-01
Chr03	irgsp1_rep	CDS	35607115	35607587	.	-	2	Parent=Os03t0846900-01
Chr03	irgsp1_rep	three_prime_UTR	35606676	35607114	.	-	.	Parent=Os03t0846900-01
Chr03	irgsp1_rep	mRNA	35625641	35629619	.	+	.	ID=Os03t0847500-01;Name=Os03t0847500-01;Locus_id=Os03g0847500;Oryzabase Gene Name Synonym(s)=a second gene with homology to PTOX;Note=Similar to Alternative oxidase.;Transcript_evidence=AK073859 (DDBJ%2C Best hit);ORF_evidence=A3APQ6 (UniProt);GO=Biological Process: respiratory gaseous exchange (GO:0007585),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: mitochondrial envelope (GO:0005740);InterPro=Alternative oxidase (IPR002680);NIAS_FLcDNA=J033073L16;Oryzabase=20885;TENOR=Os03t0847500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	35625641	35626072	.	+	.	Parent=Os03t0847500-01
Chr03	irgsp1_rep	CDS	35626073	35626342	.	+	0	Parent=Os03t0847500-01
Chr03	irgsp1_rep	CDS	35626450	35626581	.	+	0	Parent=Os03t0847500-01
Chr03	irgsp1_rep	CDS	35626668	35626730	.	+	0	Parent=Os03t0847500-01
Chr03	irgsp1_rep	three_prime_UTR	35626731	35628547	.	+	.	Parent=Os03t0847500-01
Chr03	irgsp1_rep	three_prime_UTR	35628692	35628736	.	+	.	Parent=Os03t0847500-01
Chr03	irgsp1_rep	three_prime_UTR	35629286	35629619	.	+	.	Parent=Os03t0847500-01
Chr03	irgsp1_rep	mRNA	35633667	35638698	.	+	.	ID=Os03t0847600-01;Name=Os03t0847600-01;Locus_id=Os03g0847600;CGSNL Gene Symbol=CDKF%3B3;CGSNL Gene Name=CYCLIN-DEPENDENT KINASE F%3B3;Oryzabase Gene Symbol Synonym(s)=CDKF%3B3%2C Orysa%3BCDKF%3B3;Note=Similar to GAMYB-binding protein.;Transcript_evidence=AK066947 (DDBJ%2C Best hit),AK098991 (DDBJ%2C Best hit);ORF_evidence=B7EX96 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013089G06,J013095L07;Oryzabase=13297;TENOR=Os03t0847600-01
Chr03	irgsp1_rep	five_prime_UTR	35633667	35633779	.	+	.	Parent=Os03t0847600-01
Chr03	irgsp1_rep	five_prime_UTR	35634169	35634518	.	+	.	Parent=Os03t0847600-01
Chr03	irgsp1_rep	CDS	35634519	35634526	.	+	0	Parent=Os03t0847600-01
Chr03	irgsp1_rep	CDS	35634607	35634685	.	+	1	Parent=Os03t0847600-01
Chr03	irgsp1_rep	CDS	35634943	35635011	.	+	0	Parent=Os03t0847600-01
Chr03	irgsp1_rep	CDS	35635094	35635183	.	+	0	Parent=Os03t0847600-01
Chr03	irgsp1_rep	CDS	35635528	35635666	.	+	0	Parent=Os03t0847600-01
Chr03	irgsp1_rep	CDS	35635752	35635854	.	+	2	Parent=Os03t0847600-01
Chr03	irgsp1_rep	CDS	35635939	35635991	.	+	1	Parent=Os03t0847600-01
Chr03	irgsp1_rep	CDS	35636137	35636203	.	+	2	Parent=Os03t0847600-01
Chr03	irgsp1_rep	CDS	35636716	35636824	.	+	1	Parent=Os03t0847600-01
Chr03	irgsp1_rep	CDS	35636903	35636968	.	+	0	Parent=Os03t0847600-01
Chr03	irgsp1_rep	CDS	35637281	35637349	.	+	0	Parent=Os03t0847600-01
Chr03	irgsp1_rep	CDS	35637430	35637487	.	+	0	Parent=Os03t0847600-01
Chr03	irgsp1_rep	CDS	35637588	35637692	.	+	2	Parent=Os03t0847600-01
Chr03	irgsp1_rep	CDS	35637777	35637811	.	+	2	Parent=Os03t0847600-01
Chr03	irgsp1_rep	CDS	35637900	35637945	.	+	0	Parent=Os03t0847600-01
Chr03	irgsp1_rep	CDS	35638097	35638181	.	+	2	Parent=Os03t0847600-01
Chr03	irgsp1_rep	CDS	35638272	35638392	.	+	1	Parent=Os03t0847600-01
Chr03	irgsp1_rep	three_prime_UTR	35638393	35638698	.	+	.	Parent=Os03t0847600-01
Chr03	irgsp1_rep	mRNA	35633705	35638611	.	+	.	ID=Os03t0847600-02;Name=Os03t0847600-02;Locus_id=Os03g0847600;CGSNL Gene Symbol=CDKF%3B3;CGSNL Gene Name=CYCLIN-DEPENDENT KINASE F%3B3;Oryzabase Gene Symbol Synonym(s)=CDKF%3B3%2C Orysa%3BCDKF%3B3;Note=Similar to GAMYB-binding protein.;Transcript_evidence=AK104847 (DDBJ%2C Best hit);ORF_evidence=Q84SN3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-042-H09;Oryzabase=13297;Expression=AK104847;TENOR=Os03t0847600-02;KEGG=Os03t0847600-02
Chr03	irgsp1_rep	five_prime_UTR	35633705	35633779	.	+	.	Parent=Os03t0847600-02
Chr03	irgsp1_rep	five_prime_UTR	35634169	35634518	.	+	.	Parent=Os03t0847600-02
Chr03	irgsp1_rep	CDS	35634519	35634526	.	+	0	Parent=Os03t0847600-02
Chr03	irgsp1_rep	CDS	35634607	35634685	.	+	1	Parent=Os03t0847600-02
Chr03	irgsp1_rep	CDS	35634943	35635011	.	+	0	Parent=Os03t0847600-02
Chr03	irgsp1_rep	CDS	35635094	35635183	.	+	0	Parent=Os03t0847600-02
Chr03	irgsp1_rep	CDS	35635528	35635666	.	+	0	Parent=Os03t0847600-02
Chr03	irgsp1_rep	CDS	35635752	35635854	.	+	2	Parent=Os03t0847600-02
Chr03	irgsp1_rep	CDS	35635939	35635991	.	+	1	Parent=Os03t0847600-02
Chr03	irgsp1_rep	CDS	35636137	35636203	.	+	2	Parent=Os03t0847600-02
Chr03	irgsp1_rep	CDS	35636716	35636824	.	+	1	Parent=Os03t0847600-02
Chr03	irgsp1_rep	CDS	35636903	35636968	.	+	0	Parent=Os03t0847600-02
Chr03	irgsp1_rep	CDS	35637281	35637349	.	+	0	Parent=Os03t0847600-02
Chr03	irgsp1_rep	CDS	35637430	35637487	.	+	0	Parent=Os03t0847600-02
Chr03	irgsp1_rep	CDS	35637588	35637692	.	+	2	Parent=Os03t0847600-02
Chr03	irgsp1_rep	CDS	35637777	35637811	.	+	2	Parent=Os03t0847600-02
Chr03	irgsp1_rep	CDS	35637900	35637945	.	+	0	Parent=Os03t0847600-02
Chr03	irgsp1_rep	CDS	35638097	35638181	.	+	2	Parent=Os03t0847600-02
Chr03	irgsp1_rep	CDS	35638272	35638392	.	+	1	Parent=Os03t0847600-02
Chr03	irgsp1_rep	three_prime_UTR	35638393	35638611	.	+	.	Parent=Os03t0847600-02
Chr03	irgsp1_rep	mRNA	35647670	35650832	.	+	.	ID=Os03t0847800-01;Name=Os03t0847800-01;Locus_id=Os03g0847800;Note=Conserved hypothetical protein.;Transcript_evidence=AK062693 (DDBJ%2C Best hit);ORF_evidence=F2DHM0 (UniProt);NIAS_FLcDNA=001-106-A05;TENOR=Os03t0847800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	35647670	35648202	.	+	.	Parent=Os03t0847800-01
Chr03	irgsp1_rep	CDS	35648203	35648289	.	+	0	Parent=Os03t0847800-01
Chr03	irgsp1_rep	CDS	35650793	35650832	.	+	0	Parent=Os03t0847800-01
Chr03	irgsp1_rep	mRNA	35653192	35653588	.	+	.	ID=Os03t0847851-00;Name=Os03t0847851-00;Locus_id=Os03g0847851;Note=Non-protein coding transcript.;Transcript_evidence=CT835272 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os03t0847851-00
Chr03	irgsp1_rep	exon	35653192	35653588	.	+	.	Parent=Os03t0847851-00
Chr03	irgsp1_rep	mRNA	35657493	35658883	.	+	.	ID=Os03t0847900-01;Name=Os03t0847900-01;Locus_id=Os03g0847900;Note=PAK-box/P21-Rho-binding domain containing protein.;Transcript_evidence=AK119609 (DDBJ%2C Best hit);ORF_evidence=NP_001148251.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=PAK-box/P21-Rho-binding (IPR000095);NIAS_FLcDNA=002-117-F09;Expression=AK119609;TENOR=Os03t0847900-01;KEGG=Os03t0847900-01
Chr03	irgsp1_rep	five_prime_UTR	35657493	35657697	.	+	.	Parent=Os03t0847900-01
Chr03	irgsp1_rep	CDS	35657698	35657866	.	+	0	Parent=Os03t0847900-01
Chr03	irgsp1_rep	CDS	35657966	35658297	.	+	2	Parent=Os03t0847900-01
Chr03	irgsp1_rep	three_prime_UTR	35658298	35658883	.	+	.	Parent=Os03t0847900-01
Chr03	irgsp1_rep	mRNA	35657496	35658709	.	+	.	ID=Os03t0847900-02;Name=Os03t0847900-02;Locus_id=Os03g0847900;Note=Similar to wiscott-Aldrich syndrome%2C C-terminal.;Transcript_evidence=AK060311 (DDBJ%2C Best hit);ORF_evidence=NP_001148251.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=PAK-box/P21-Rho-binding (IPR000095);NIAS_FLcDNA=001-007-B12;Expression=AK060311;TENOR=Os03t0847900-02;KEGG=Os03t0847900-02
Chr03	irgsp1_rep	five_prime_UTR	35657496	35657958	.	+	.	Parent=Os03t0847900-02
Chr03	irgsp1_rep	CDS	35657959	35658297	.	+	0	Parent=Os03t0847900-02
Chr03	irgsp1_rep	three_prime_UTR	35658298	35658709	.	+	.	Parent=Os03t0847900-02
Chr03	irgsp1_rep	mRNA	35657498	35659395	.	+	.	ID=Os03t0847900-03;Name=Os03t0847900-03;Locus_id=Os03g0847900;Note=Similar to wiscott-Aldrich syndrome%2C C-terminal.;Transcript_evidence=AK110889 (DDBJ%2C Best hit);ORF_evidence=NP_001148251.1 (RefSeq);NIAS_FLcDNA=002-172-H06;TENOR=Os03t0847900-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	35657498	35657697	.	+	.	Parent=Os03t0847900-03
Chr03	irgsp1_rep	CDS	35657698	35657889	.	+	0	Parent=Os03t0847900-03
Chr03	irgsp1_rep	three_prime_UTR	35657890	35658087	.	+	.	Parent=Os03t0847900-03
Chr03	irgsp1_rep	three_prime_UTR	35658665	35659395	.	+	.	Parent=Os03t0847900-03
Chr03	irgsp1_rep	mRNA	35657554	35658706	.	+	.	ID=Os03t0847900-04;Name=Os03t0847900-04;Locus_id=Os03g0847900;Note=PAK-box/P21-Rho-binding domain containing protein.;Transcript_evidence=AK061411 (DDBJ%2C Best hit);ORF_evidence=NP_001148251.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=PAK-box/P21-Rho-binding (IPR000095);NIAS_FLcDNA=006-306-C09;Expression=AK061411;TENOR=Os03t0847900-04;KEGG=Os03t0847900-04
Chr03	irgsp1_rep	five_prime_UTR	35657554	35657697	.	+	.	Parent=Os03t0847900-04
Chr03	irgsp1_rep	CDS	35657698	35657866	.	+	0	Parent=Os03t0847900-04
Chr03	irgsp1_rep	CDS	35657966	35658297	.	+	2	Parent=Os03t0847900-04
Chr03	irgsp1_rep	three_prime_UTR	35658298	35658706	.	+	.	Parent=Os03t0847900-04
Chr03	irgsp1_rep	mRNA	35659857	35663960	.	-	.	ID=Os03t0848100-01;Name=Os03t0848100-01;Locus_id=Os03g0848100;Oryzabase Gene Symbol Synonym(s)=LDC%2C PAP15%2C OsPAP15;Oryzabase Gene Name Synonym(s)=lysine decarboxylase;Note=Similar to Ser/Thr protein phosphatase family protein%2C expressed.;Transcript_evidence=AK065415 (DDBJ%2C Best hit);ORF_evidence=Q10AM0 (UniProt);NIAS_FLcDNA=J013023C05;Oryzabase=14344;TENOR=Os03t0848100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	35663960	35663960	.	-	.	Parent=Os03t0848100-01
Chr03	irgsp1_rep	CDS	35663450	35663959	.	-	0	Parent=Os03t0848100-01
Chr03	irgsp1_rep	three_prime_UTR	35660539	35663449	.	-	.	Parent=Os03t0848100-01
Chr03	irgsp1_rep	three_prime_UTR	35659857	35660444	.	-	.	Parent=Os03t0848100-01
Chr03	irgsp1_rep	mRNA	35664361	35667157	.	-	.	ID=Os03t0848200-01;Name=Os03t0848200-01;Locus_id=Os03g0848200;CGSNL Gene Symbol=PAP15;CGSNL Gene Name=PURPLE ACID PHOSPHATASE 15;Oryzabase Gene Symbol Synonym(s)=OsPAP15%2C OsPAPhy_b%2C PAPhy_b%2C OsPHY1;Oryzabase Gene Name Synonym(s)=purple acid phosphatase 15%2C purple acid phosphatase phytase b%2C phytase 1;Note=Similar to Phytase.;Transcript_evidence=AK072278 (DDBJ%2C Best hit);ORF_evidence=Q10AM0 (UniProt);GO=Molecular Function: acid phosphatase activity (GO:0003993),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: metal ion binding (GO:0046872);InterPro=Metallophosphoesterase domain (IPR004843),Purple acid phosphatase-like%2C N-terminal (IPR008963),Purple acid phosphatase%2C N-terminal (IPR015914);NIAS_FLcDNA=J023018A12;Oryzabase=11386;Expression=AK072278;TENOR=Os03t0848200-01;KEGG=Os03t0848200-01
Chr03	irgsp1_rep	five_prime_UTR	35666961	35667157	.	-	.	Parent=Os03t0848200-01
Chr03	irgsp1_rep	five_prime_UTR	35666722	35666914	.	-	.	Parent=Os03t0848200-01
Chr03	irgsp1_rep	CDS	35666541	35666721	.	-	0	Parent=Os03t0848200-01
Chr03	irgsp1_rep	CDS	35666129	35666468	.	-	2	Parent=Os03t0848200-01
Chr03	irgsp1_rep	CDS	35665604	35665821	.	-	1	Parent=Os03t0848200-01
Chr03	irgsp1_rep	CDS	35665128	35665318	.	-	2	Parent=Os03t0848200-01
Chr03	irgsp1_rep	CDS	35664762	35665049	.	-	0	Parent=Os03t0848200-01
Chr03	irgsp1_rep	CDS	35664535	35664675	.	-	0	Parent=Os03t0848200-01
Chr03	irgsp1_rep	three_prime_UTR	35664361	35664534	.	-	.	Parent=Os03t0848200-01
Chr03	irgsp1_rep	mRNA	35664572	35666969	.	+	.	ID=Os03t0848250-00;Name=Os03t0848250-00;Locus_id=Os03g0848250;Note=Hypothetical protein.;Transcript_evidence=tplb0047d03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0848250-00
Chr03	irgsp1_rep	five_prime_UTR	35664572	35664661	.	+	.	Parent=Os03t0848250-00
Chr03	irgsp1_rep	five_prime_UTR	35664748	35665037	.	+	.	Parent=Os03t0848250-00
Chr03	irgsp1_rep	five_prime_UTR	35665120	35665335	.	+	.	Parent=Os03t0848250-00
Chr03	irgsp1_rep	five_prime_UTR	35665622	35665675	.	+	.	Parent=Os03t0848250-00
Chr03	irgsp1_rep	CDS	35665676	35665826	.	+	0	Parent=Os03t0848250-00
Chr03	irgsp1_rep	CDS	35666138	35666445	.	+	2	Parent=Os03t0848250-00
Chr03	irgsp1_rep	CDS	35666520	35666528	.	+	0	Parent=Os03t0848250-00
Chr03	irgsp1_rep	three_prime_UTR	35666529	35666969	.	+	.	Parent=Os03t0848250-00
Chr03	irgsp1_rep	mRNA	35669662	35672740	.	+	.	ID=Os03t0848300-01;Name=Os03t0848300-01;Locus_id=Os03g0848300;Note=Similar to Actin-related protein 2/3 complex subunit 4 (ARP2/3 complex 20 kDa subunit) (p20-ARC).;Transcript_evidence=AK102089 (DDBJ%2C Best hit);ORF_evidence=A2XP21 (UniProt);GO=Biological Process: actin filament polymerization (GO:0030041),Cellular Component: cytoskeleton (GO:0005856);InterPro=ARP23 complex 20kDa subunit (IPR008384);NIAS_FLcDNA=J033082P03;Expression=AK102089;TENOR=Os03t0848300-01;KEGG=Os03t0848300-01
Chr03	irgsp1_rep	five_prime_UTR	35669662	35669782	.	+	.	Parent=Os03t0848300-01
Chr03	irgsp1_rep	CDS	35669783	35669785	.	+	0	Parent=Os03t0848300-01
Chr03	irgsp1_rep	CDS	35670129	35670194	.	+	0	Parent=Os03t0848300-01
Chr03	irgsp1_rep	CDS	35670328	35670380	.	+	0	Parent=Os03t0848300-01
Chr03	irgsp1_rep	CDS	35670957	35670984	.	+	1	Parent=Os03t0848300-01
Chr03	irgsp1_rep	CDS	35671652	35671726	.	+	0	Parent=Os03t0848300-01
Chr03	irgsp1_rep	CDS	35671835	35671939	.	+	0	Parent=Os03t0848300-01
Chr03	irgsp1_rep	CDS	35672093	35672182	.	+	0	Parent=Os03t0848300-01
Chr03	irgsp1_rep	CDS	35672269	35672358	.	+	0	Parent=Os03t0848300-01
Chr03	irgsp1_rep	three_prime_UTR	35672359	35672740	.	+	.	Parent=Os03t0848300-01
Chr03	irgsp1_rep	mRNA	35670137	35672609	.	+	.	ID=Os03t0848300-02;Name=Os03t0848300-02;Locus_id=Os03g0848300;Note=Similar to actin-related protein 2/3 complex subunit 4.;Transcript_evidence=AK059137 (DDBJ%2C Best hit);ORF_evidence=A2XP21 (UniProt);GO=Biological Process: actin filament polymerization (GO:0030041),Cellular Component: cytoskeleton (GO:0005856);InterPro=ARP23 complex 20kDa subunit (IPR008384);NIAS_FLcDNA=001-022-H07;Expression=AK059137;TENOR=Os03t0848300-02;KEGG=Os03t0848300-02
Chr03	irgsp1_rep	five_prime_UTR	35670137	35670137	.	+	.	Parent=Os03t0848300-02
Chr03	irgsp1_rep	CDS	35670138	35670194	.	+	0	Parent=Os03t0848300-02
Chr03	irgsp1_rep	CDS	35670328	35670380	.	+	0	Parent=Os03t0848300-02
Chr03	irgsp1_rep	CDS	35670957	35670984	.	+	1	Parent=Os03t0848300-02
Chr03	irgsp1_rep	CDS	35671652	35671726	.	+	0	Parent=Os03t0848300-02
Chr03	irgsp1_rep	CDS	35671835	35671939	.	+	0	Parent=Os03t0848300-02
Chr03	irgsp1_rep	CDS	35672093	35672182	.	+	0	Parent=Os03t0848300-02
Chr03	irgsp1_rep	CDS	35672269	35672358	.	+	0	Parent=Os03t0848300-02
Chr03	irgsp1_rep	three_prime_UTR	35672359	35672609	.	+	.	Parent=Os03t0848300-02
Chr03	irgsp1_rep	mRNA	35673669	35676851	.	-	.	ID=Os03t0848400-01;Name=Os03t0848400-01;Locus_id=Os03g0848400;Note=B-cell receptor-associated 31-like family protein.;Transcript_evidence=AK067600 (DDBJ%2C Best hit);ORF_evidence=B6U1I6 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Cellular Component: endoplasmic reticulum (GO:0005783),Cellular Component: integral to membrane (GO:0016021);InterPro=B-cell receptor-associated 31-like (IPR008417);NIAS_FLcDNA=J013111M09;Expression=AK067600;TENOR=Os03t0848400-01;KEGG=Os03t0848400-01
Chr03	irgsp1_rep	five_prime_UTR	35676591	35676851	.	-	.	Parent=Os03t0848400-01
Chr03	irgsp1_rep	five_prime_UTR	35676198	35676489	.	-	.	Parent=Os03t0848400-01
Chr03	irgsp1_rep	CDS	35675912	35676197	.	-	0	Parent=Os03t0848400-01
Chr03	irgsp1_rep	CDS	35674096	35674463	.	-	2	Parent=Os03t0848400-01
Chr03	irgsp1_rep	three_prime_UTR	35673669	35674095	.	-	.	Parent=Os03t0848400-01
Chr03	irgsp1_rep	mRNA	35673736	35676696	.	-	.	ID=Os03t0848400-02;Name=Os03t0848400-02;Locus_id=Os03g0848400;Note=B-cell receptor-associated 31-like family protein.;Transcript_evidence=AK060400 (DDBJ%2C Best hit);ORF_evidence=B6U1I6 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Cellular Component: endoplasmic reticulum (GO:0005783),Cellular Component: integral to membrane (GO:0016021);InterPro=B-cell receptor-associated 31-like (IPR008417);NIAS_FLcDNA=001-010-B10;Expression=AK060400;TENOR=Os03t0848400-02;KEGG=Os03t0848400-02
Chr03	irgsp1_rep	five_prime_UTR	35676591	35676696	.	-	.	Parent=Os03t0848400-02
Chr03	irgsp1_rep	five_prime_UTR	35676198	35676489	.	-	.	Parent=Os03t0848400-02
Chr03	irgsp1_rep	CDS	35675912	35676197	.	-	0	Parent=Os03t0848400-02
Chr03	irgsp1_rep	CDS	35674096	35674463	.	-	2	Parent=Os03t0848400-02
Chr03	irgsp1_rep	three_prime_UTR	35673736	35674095	.	-	.	Parent=Os03t0848400-02
Chr03	irgsp1_rep	mRNA	35689630	35692297	.	+	.	ID=Os03t0848600-01;Name=Os03t0848600-01;Locus_id=Os03g0848600;Note=Similar to NOI protein.;Transcript_evidence=AK065662 (DDBJ%2C Best hit);ORF_evidence=B4G0G9 (UniProt);InterPro=Pathogenic type III effector avirulence factor Avr cleavage site (IPR008700);NIAS_FLcDNA=J013041L20;Expression=AK065662;TENOR=Os03t0848600-01;KEGG=Os03t0848600-01
Chr03	irgsp1_rep	five_prime_UTR	35689630	35689823	.	+	.	Parent=Os03t0848600-01
Chr03	irgsp1_rep	CDS	35689824	35689829	.	+	0	Parent=Os03t0848600-01
Chr03	irgsp1_rep	CDS	35690789	35691289	.	+	0	Parent=Os03t0848600-01
Chr03	irgsp1_rep	CDS	35691389	35691577	.	+	0	Parent=Os03t0848600-01
Chr03	irgsp1_rep	CDS	35692058	35692090	.	+	0	Parent=Os03t0848600-01
Chr03	irgsp1_rep	three_prime_UTR	35692091	35692297	.	+	.	Parent=Os03t0848600-01
Chr03	irgsp1_rep	mRNA	35693286	35699010	.	-	.	ID=Os03t0848700-01;Name=Os03t0848700-01;Locus_id=Os03g0848700;RAP-DB Gene Symbol Synonym(s)=Bph14%2C BPH14;RAP-DB Gene Name Synonym(s)=BROWN PLANTHOPPER RESISTANCE14;CGSNL Gene Symbol=BPH14;CGSNL Gene Name=BROWN PLANTHOPPER RESISTANCE 14;Oryzabase Gene Symbol Synonym(s)=Bph14 (Qbp1)%2C Bph14%2C Qbp1%2C qBPH-3;Oryzabase Gene Name Synonym(s)=brown planthopper resistance 14%2C Brown planthopper resistance-14%2C BROWN PLANTHOPPER RESISTANCE14;Note=Coiled-coil%2C nucleotide-binding%2C and leucine-rich repeat (CC-NB-LRR) protein%2C Resistance to brown planthopper%2C (Nipponbare: BPH-susceptible);Transcript_evidence=AK065798;ORF_evidence=Q10AL3;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700),Molecular Function: ADP binding (GO:0043531);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),Winged helix-like DNA-binding domain superfamily (IPR036388),Leucine-rich repeat domain superfamily (IPR032675),NB-ARC (IPR002182),TEA/ATTS domain (IPR000818);NIAS_FLcDNA=J013039L06;Manual Curation=February 23%2C 2018;Literature_PMID=29093216,20018701;Oryzabase=5230;Expression=AK065798;TENOR=Os03t0848700-01;KEGG=Os03t0848700-01;Subcellular location=cytoplasm (GO:0005737)
Chr03	irgsp1_rep	five_prime_UTR	35698828	35699010	.	-	.	Parent=Os03t0848700-01
Chr03	irgsp1_rep	five_prime_UTR	35698495	35698512	.	-	.	Parent=Os03t0848700-01
Chr03	irgsp1_rep	CDS	35694588	35698494	.	-	0	Parent=Os03t0848700-01
Chr03	irgsp1_rep	CDS	35693747	35693820	.	-	2	Parent=Os03t0848700-01
Chr03	irgsp1_rep	three_prime_UTR	35693714	35693746	.	-	.	Parent=Os03t0848700-01
Chr03	irgsp1_rep	three_prime_UTR	35693286	35693623	.	-	.	Parent=Os03t0848700-01
Chr03	irgsp1_rep	mRNA	35729864	35735904	.	+	.	ID=Os03t0849300-01;Name=Os03t0849300-01;Locus_id=Os03g0849300;Note=Non-protein coding transcript.;Transcript_evidence=AK242482 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080305D05;TENOR=Os03t0849300-01
Chr03	irgsp1_rep	exon	35729864	35730097	.	+	.	Parent=Os03t0849300-01
Chr03	irgsp1_rep	exon	35730175	35730324	.	+	.	Parent=Os03t0849300-01
Chr03	irgsp1_rep	exon	35735548	35735904	.	+	.	Parent=Os03t0849300-01
Chr03	irgsp1_rep	mRNA	35729896	35732118	.	-	.	ID=Os03t0849500-00;Name=Os03t0849500-00;Locus_id=Os03g0849500;Note=Similar to BPH14-1.;Transcript_evidence=ab initio prediction;ORF_evidence=D2SZX5 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: protein binding (GO:0005515),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),Leucine-rich repeat (IPR001611),NB-ARC (IPR002182);TENOR=Os03t0849500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	35731705	35732118	.	-	0	Parent=Os03t0849500-00
Chr03	irgsp1_rep	CDS	35729896	35731341	.	-	0	Parent=Os03t0849500-00
Chr03	irgsp1_rep	mRNA	35736085	35741607	.	-	.	ID=Os03t0849600-01;Name=Os03t0849600-01;Locus_id=Os03g0849600;Note=COG complex component%2C COG2 family protein.;Transcript_evidence=AK101862 (DDBJ%2C Best hit);ORF_evidence=Q9SZX4 (UniProt);GO=Biological Process: Golgi organization (GO:0007030),Biological Process: protein transport (GO:0015031),Cellular Component: membrane (GO:0016020);InterPro=COG complex component%2C COG2 (IPR009316),Conserved oligomeric Golgi complex%2C subunit 2%2C N-terminal (IPR024602),COG complex component%2C COG2%2C C-terminal (IPR024603);NIAS_FLcDNA=J033070C05;Expression=AK101862;TENOR=Os03t0849600-01;KEGG=Os03t0849600-01
Chr03	irgsp1_rep	five_prime_UTR	35741552	35741607	.	-	.	Parent=Os03t0849600-01
Chr03	irgsp1_rep	CDS	35741099	35741551	.	-	0	Parent=Os03t0849600-01
Chr03	irgsp1_rep	CDS	35740287	35740493	.	-	0	Parent=Os03t0849600-01
Chr03	irgsp1_rep	CDS	35739552	35739888	.	-	0	Parent=Os03t0849600-01
Chr03	irgsp1_rep	CDS	35739263	35739424	.	-	2	Parent=Os03t0849600-01
Chr03	irgsp1_rep	CDS	35738950	35739049	.	-	2	Parent=Os03t0849600-01
Chr03	irgsp1_rep	CDS	35738654	35738863	.	-	1	Parent=Os03t0849600-01
Chr03	irgsp1_rep	CDS	35738449	35738563	.	-	1	Parent=Os03t0849600-01
Chr03	irgsp1_rep	CDS	35737699	35737905	.	-	0	Parent=Os03t0849600-01
Chr03	irgsp1_rep	CDS	35737455	35737556	.	-	0	Parent=Os03t0849600-01
Chr03	irgsp1_rep	CDS	35737039	35737161	.	-	0	Parent=Os03t0849600-01
Chr03	irgsp1_rep	CDS	35736824	35736958	.	-	0	Parent=Os03t0849600-01
Chr03	irgsp1_rep	CDS	35736349	35736462	.	-	0	Parent=Os03t0849600-01
Chr03	irgsp1_rep	three_prime_UTR	35736085	35736348	.	-	.	Parent=Os03t0849600-01
Chr03	irgsp1_rep	mRNA	35741831	35748174	.	+	.	ID=Os03t0849700-01;Name=Os03t0849700-01;Locus_id=Os03g0849700;Note=Hypothetical conserved gene.;Transcript_evidence=AK111868 (DDBJ%2C Best hit);ORF_evidence=B9F7L6 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033044J01;Expression=AK111868;TENOR=Os03t0849700-01;KEGG=Os03t0849700-01
Chr03	irgsp1_rep	five_prime_UTR	35741831	35741961	.	+	.	Parent=Os03t0849700-01
Chr03	irgsp1_rep	five_prime_UTR	35744599	35744783	.	+	.	Parent=Os03t0849700-01
Chr03	irgsp1_rep	CDS	35744784	35746838	.	+	0	Parent=Os03t0849700-01
Chr03	irgsp1_rep	three_prime_UTR	35746839	35747411	.	+	.	Parent=Os03t0849700-01
Chr03	irgsp1_rep	three_prime_UTR	35747719	35747847	.	+	.	Parent=Os03t0849700-01
Chr03	irgsp1_rep	three_prime_UTR	35747927	35748174	.	+	.	Parent=Os03t0849700-01
Chr03	irgsp1_rep	mRNA	35744790	35746376	.	-	.	ID=Os03t0849750-00;Name=Os03t0849750-00;Locus_id=Os03g0849750;Note=Hypothetical gene.;Transcript_evidence=BT084853 (DDBJ);ORF_evidence=GeneMark;TENOR=Os03t0849750-00;KEGG=Os03t0849750-00
Chr03	irgsp1_rep	five_prime_UTR	35745430	35746376	.	-	.	Parent=Os03t0849750-00
Chr03	irgsp1_rep	CDS	35745306	35745429	.	-	0	Parent=Os03t0849750-00
Chr03	irgsp1_rep	CDS	35745005	35745198	.	-	2	Parent=Os03t0849750-00
Chr03	irgsp1_rep	three_prime_UTR	35744790	35745004	.	-	.	Parent=Os03t0849750-00
Chr03	irgsp1_rep	mRNA	35753369	35757214	.	+	.	ID=Os03t0849800-01;Name=Os03t0849800-01;Locus_id=Os03g0849800;Note=Nucleotide-diphospho-sugar transferase domain containing protein.;Transcript_evidence=AK069826 (DDBJ%2C Best hit);ORF_evidence=Q852E1 (UniProt);InterPro=Nucleotide-diphospho-sugar transferase (IPR005069);NIAS_FLcDNA=J023030E05;TENOR=Os03t0849800-01
Chr03	irgsp1_rep	five_prime_UTR	35753369	35753686	.	+	.	Parent=Os03t0849800-01
Chr03	irgsp1_rep	CDS	35753687	35753995	.	+	0	Parent=Os03t0849800-01
Chr03	irgsp1_rep	CDS	35756165	35756545	.	+	0	Parent=Os03t0849800-01
Chr03	irgsp1_rep	CDS	35757165	35757214	.	+	0	Parent=Os03t0849800-01
Chr03	irgsp1_rep	mRNA	35753524	35754090	.	+	.	ID=Os03t0849800-02;Name=Os03t0849800-02;Locus_id=Os03g0849800;Note=Hypothetical conserved gene.;Transcript_evidence=AK106469 (DDBJ%2C Best hit);ORF_evidence=Q852E1 (UniProt);NIAS_FLcDNA=002-103-H09;Expression=AK106469;TENOR=Os03t0849800-02;KEGG=Os03t0849800-02
Chr03	irgsp1_rep	five_prime_UTR	35753524	35753686	.	+	.	Parent=Os03t0849800-02
Chr03	irgsp1_rep	CDS	35753687	35754055	.	+	0	Parent=Os03t0849800-02
Chr03	irgsp1_rep	three_prime_UTR	35754056	35754090	.	+	.	Parent=Os03t0849800-02
Chr03	irgsp1_rep	mRNA	35766964	35768997	.	+	.	ID=Os03t0849900-01;Name=Os03t0849900-01;Locus_id=Os03g0849900;Note=Nucleotide-diphospho-sugar transferase domain containing protein.;Transcript_evidence=AK105978 (DDBJ%2C Best hit),AK071606 (DDBJ%2C Best hit);ORF_evidence=A3APS3 (UniProt);InterPro=Nucleotide-diphospho-sugar transferase (IPR005069);NIAS_FLcDNA=001-205-F09,J023099J20;TENOR=Os03t0849900-01
Chr03	irgsp1_rep	five_prime_UTR	35766964	35766993	.	+	.	Parent=Os03t0849900-01
Chr03	irgsp1_rep	CDS	35766994	35767368	.	+	0	Parent=Os03t0849900-01
Chr03	irgsp1_rep	CDS	35767843	35768214	.	+	0	Parent=Os03t0849900-01
Chr03	irgsp1_rep	CDS	35768301	35768780	.	+	0	Parent=Os03t0849900-01
Chr03	irgsp1_rep	three_prime_UTR	35768781	35768997	.	+	.	Parent=Os03t0849900-01
Chr03	irgsp1_rep	mRNA	35766994	35768986	.	+	.	ID=Os03t0849900-02;Name=Os03t0849900-02;Locus_id=Os03g0849900;Note=Nucleotide-diphospho-sugar transferase domain containing protein.;Transcript_evidence=AK104518 (DDBJ%2C Best hit);ORF_evidence=A3APS3 (UniProt);InterPro=Nucleotide-diphospho-sugar transferase (IPR005069);NIAS_FLcDNA=006-303-D02;Expression=AK104518;TENOR=Os03t0849900-02;KEGG=Os03t0849900-02
Chr03	irgsp1_rep	CDS	35766994	35767368	.	+	0	Parent=Os03t0849900-02
Chr03	irgsp1_rep	CDS	35767843	35768214	.	+	0	Parent=Os03t0849900-02
Chr03	irgsp1_rep	CDS	35768301	35768780	.	+	0	Parent=Os03t0849900-02
Chr03	irgsp1_rep	three_prime_UTR	35768781	35768986	.	+	.	Parent=Os03t0849900-02
Chr03	irgsp1_rep	mRNA	35769802	35772247	.	-	.	ID=Os03t0850000-01;Name=Os03t0850000-01;Locus_id=Os03g0850000;Note=Glucose/ribitol dehydrogenase family protein.;Transcript_evidence=AK105776 (DDBJ%2C Best hit),AK068201 (DDBJ%2C Best hit);ORF_evidence=NP_001151665.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-202-F08,J013146E23;Expression=AK105776;TENOR=Os03t0850000-01;KEGG=Os03t0850000-01
Chr03	irgsp1_rep	five_prime_UTR	35772247	35772247	.	-	.	Parent=Os03t0850000-01
Chr03	irgsp1_rep	CDS	35772128	35772246	.	-	0	Parent=Os03t0850000-01
Chr03	irgsp1_rep	CDS	35771855	35772054	.	-	1	Parent=Os03t0850000-01
Chr03	irgsp1_rep	CDS	35771040	35771275	.	-	2	Parent=Os03t0850000-01
Chr03	irgsp1_rep	CDS	35770167	35770445	.	-	0	Parent=Os03t0850000-01
Chr03	irgsp1_rep	three_prime_UTR	35769802	35770166	.	-	.	Parent=Os03t0850000-01
Chr03	irgsp1_rep	mRNA	35772701	35777460	.	-	.	ID=Os03t0850100-01;Name=Os03t0850100-01;Locus_id=Os03g0850100;Note=NLI interacting factor domain containing protein.;Transcript_evidence=AK101126 (DDBJ%2C Best hit);ORF_evidence=C7EYT3 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: phosphatase activity (GO:0016791);InterPro=NLI interacting factor (IPR004274),Dullard phosphatase domain%2C eukaryotic (IPR011948),HAD-like domain (IPR023214);NIAS_FLcDNA=J033025N10;Expression=AK101126;TENOR=Os03t0850100-01;KEGG=Os03t0850100-01
Chr03	irgsp1_rep	five_prime_UTR	35777335	35777460	.	-	.	Parent=Os03t0850100-01
Chr03	irgsp1_rep	five_prime_UTR	35776724	35776855	.	-	.	Parent=Os03t0850100-01
Chr03	irgsp1_rep	CDS	35776573	35776723	.	-	0	Parent=Os03t0850100-01
Chr03	irgsp1_rep	CDS	35776129	35776253	.	-	2	Parent=Os03t0850100-01
Chr03	irgsp1_rep	CDS	35775829	35775925	.	-	0	Parent=Os03t0850100-01
Chr03	irgsp1_rep	CDS	35775172	35775600	.	-	2	Parent=Os03t0850100-01
Chr03	irgsp1_rep	CDS	35774270	35774607	.	-	2	Parent=Os03t0850100-01
Chr03	irgsp1_rep	CDS	35773054	35773248	.	-	0	Parent=Os03t0850100-01
Chr03	irgsp1_rep	three_prime_UTR	35772701	35773053	.	-	.	Parent=Os03t0850100-01
Chr03	irgsp1_rep	mRNA	35777902	35778650	.	+	.	ID=Os03t0850200-00;Name=Os03t0850200-00;Locus_id=Os03g0850200;Note=Similar to CytoChrome P450.;Transcript_evidence=CT835106 (DDBJ%2C Best hit);ORF_evidence=A7U1X5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);TENOR=Os03t0850200-00;KEGG=Os03t0850200-00
Chr03	irgsp1_rep	five_prime_UTR	35777902	35777957	.	+	.	Parent=Os03t0850200-00
Chr03	irgsp1_rep	CDS	35777958	35778581	.	+	0	Parent=Os03t0850200-00
Chr03	irgsp1_rep	three_prime_UTR	35778582	35778650	.	+	.	Parent=Os03t0850200-00
Chr03	irgsp1_rep	mRNA	35785455	35786426	.	-	.	ID=Os03t0850300-01;Name=Os03t0850300-01;Locus_id=Os03g0850300;Note=Sterile alpha motif-type domain containing protein.;Transcript_evidence=AK289118 (DDBJ%2C Best hit);ORF_evidence=NP_001150696.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Sterile alpha motif domain (IPR001660),Sterile alpha motif%2C type 2 (IPR011510),Sterile alpha motif/pointed domain (IPR013761);NIAS_FLcDNA=J090097I05;TENOR=Os03t0850300-01;KEGG=Os03t0850300-01
Chr03	irgsp1_rep	five_prime_UTR	35786402	35786426	.	-	.	Parent=Os03t0850300-01
Chr03	irgsp1_rep	CDS	35785631	35786401	.	-	0	Parent=Os03t0850300-01
Chr03	irgsp1_rep	three_prime_UTR	35785455	35785630	.	-	.	Parent=Os03t0850300-01
Chr03	irgsp1_rep	mRNA	35790044	35795425	.	+	.	ID=Os03t0850400-01;Name=Os03t0850400-01;Locus_id=Os03g0850400;Note=Similar to Aspartokinase.;Transcript_evidence=AK121930 (DDBJ%2C Best hit);ORF_evidence=B8ANP4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: cellular amino acid biosynthetic process (GO:0008652),Molecular Function: aspartate kinase activity (GO:0004072),Molecular Function: amino acid binding (GO:0016597);InterPro=Aspartate/glutamate/uridylate kinase (IPR001048),Aspartate kinase domain (IPR001341),Amino acid-binding ACT (IPR002912);NIAS_FLcDNA=J033106K22;TENOR=Os03t0850400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	35790044	35790132	.	+	.	Parent=Os03t0850400-01
Chr03	irgsp1_rep	CDS	35790133	35790213	.	+	0	Parent=Os03t0850400-01
Chr03	irgsp1_rep	CDS	35790299	35790517	.	+	0	Parent=Os03t0850400-01
Chr03	irgsp1_rep	CDS	35790618	35790700	.	+	0	Parent=Os03t0850400-01
Chr03	irgsp1_rep	CDS	35790787	35790827	.	+	1	Parent=Os03t0850400-01
Chr03	irgsp1_rep	CDS	35792032	35792186	.	+	2	Parent=Os03t0850400-01
Chr03	irgsp1_rep	CDS	35792931	35793080	.	+	0	Parent=Os03t0850400-01
Chr03	irgsp1_rep	CDS	35793201	35793296	.	+	0	Parent=Os03t0850400-01
Chr03	irgsp1_rep	CDS	35793553	35793669	.	+	0	Parent=Os03t0850400-01
Chr03	irgsp1_rep	CDS	35793784	35793903	.	+	0	Parent=Os03t0850400-01
Chr03	irgsp1_rep	CDS	35793985	35794077	.	+	0	Parent=Os03t0850400-01
Chr03	irgsp1_rep	CDS	35794166	35794282	.	+	0	Parent=Os03t0850400-01
Chr03	irgsp1_rep	CDS	35794630	35794746	.	+	0	Parent=Os03t0850400-01
Chr03	irgsp1_rep	CDS	35794904	35794966	.	+	0	Parent=Os03t0850400-01
Chr03	irgsp1_rep	CDS	35795053	35795214	.	+	0	Parent=Os03t0850400-01
Chr03	irgsp1_rep	three_prime_UTR	35795215	35795425	.	+	.	Parent=Os03t0850400-01
Chr03	irgsp1_rep	mRNA	35806060	35808891	.	-	.	ID=Os03t0850600-01;Name=Os03t0850600-01;Locus_id=Os03g0850600;Note=Similar to Integral membrane protein.;Transcript_evidence=AK067191 (DDBJ%2C Best hit);ORF_evidence=B6U4H9 (UniProt);InterPro=Protein of unknown function DUF2301 (IPR019275);NIAS_FLcDNA=J013095N12;Expression=AK067191;TENOR=Os03t0850600-01;KEGG=Os03t0850600-01
Chr03	irgsp1_rep	five_prime_UTR	35808858	35808891	.	-	.	Parent=Os03t0850600-01
Chr03	irgsp1_rep	CDS	35808272	35808857	.	-	0	Parent=Os03t0850600-01
Chr03	irgsp1_rep	CDS	35806839	35806909	.	-	2	Parent=Os03t0850600-01
Chr03	irgsp1_rep	CDS	35806586	35806684	.	-	0	Parent=Os03t0850600-01
Chr03	irgsp1_rep	CDS	35806362	35806466	.	-	0	Parent=Os03t0850600-01
Chr03	irgsp1_rep	three_prime_UTR	35806060	35806361	.	-	.	Parent=Os03t0850600-01
Chr03	irgsp1_rep	mRNA	35810027	35814626	.	-	.	ID=Os03t0850700-01;Name=Os03t0850700-01;Locus_id=Os03g0850700;Note=Similar to Phosphatidylinositol phosphatidylcholine transfer protein sec14 cytosolic-like protein.;Transcript_evidence=AK062083 (DDBJ%2C Best hit);ORF_evidence=B6TP56 (UniProt);InterPro=Cellular retinaldehyde-binding/triple function%2C C-terminal (IPR001251),Cellular retinaldehyde-binding/triple function%2C N-terminal (IPR008273),Phosphatidylinositol transfer protein-like%2C N-terminal (IPR011074);NIAS_FLcDNA=001-044-G01;Expression=AK062083;TENOR=Os03t0850700-01;KEGG=Os03t0850700-01
Chr03	irgsp1_rep	five_prime_UTR	35814488	35814626	.	-	.	Parent=Os03t0850700-01
Chr03	irgsp1_rep	CDS	35814371	35814487	.	-	0	Parent=Os03t0850700-01
Chr03	irgsp1_rep	CDS	35810298	35810966	.	-	0	Parent=Os03t0850700-01
Chr03	irgsp1_rep	three_prime_UTR	35810027	35810297	.	-	.	Parent=Os03t0850700-01
Chr03	irgsp1_rep	mRNA	35810051	35814549	.	-	.	ID=Os03t0850700-02;Name=Os03t0850700-02;Locus_id=Os03g0850700;Note=Similar to Phosphatidylinositol phosphatidylcholine transfer protein sec14 cytosolic-like protein.;Transcript_evidence=AK099525 (DDBJ%2C Best hit),AK061542 (DDBJ%2C Best hit);ORF_evidence=B6TP56 (UniProt);InterPro=Cellular retinaldehyde-binding/triple function%2C C-terminal (IPR001251),Cellular retinaldehyde-binding/triple function%2C N-terminal (IPR008273),Phosphatidylinositol transfer protein-like%2C N-terminal (IPR011074);NIAS_FLcDNA=J013030L21,006-310-H09;Expression=AK099525;TENOR=Os03t0850700-02;KEGG=Os03t0850700-02
Chr03	irgsp1_rep	five_prime_UTR	35814488	35814549	.	-	.	Parent=Os03t0850700-02
Chr03	irgsp1_rep	CDS	35814371	35814487	.	-	0	Parent=Os03t0850700-02
Chr03	irgsp1_rep	CDS	35810298	35810966	.	-	0	Parent=Os03t0850700-02
Chr03	irgsp1_rep	three_prime_UTR	35810051	35810297	.	-	.	Parent=Os03t0850700-02
Chr03	irgsp1_rep	mRNA	35817319	35819563	.	-	.	ID=Os03t0850800-01;Name=Os03t0850800-01;Locus_id=Os03g0850800;Note=Similar to transferase%2C transferring glycosyl groups.;Transcript_evidence=AK101366 (DDBJ%2C Best hit);ORF_evidence=NP_567420.1 (RefSeq);NIAS_FLcDNA=J033035L04;Expression=AK101366;TENOR=Os03t0850800-01;KEGG=Os03t0850800-01
Chr03	irgsp1_rep	five_prime_UTR	35819553	35819563	.	-	.	Parent=Os03t0850800-01
Chr03	irgsp1_rep	CDS	35819087	35819552	.	-	0	Parent=Os03t0850800-01
Chr03	irgsp1_rep	CDS	35817578	35817756	.	-	2	Parent=Os03t0850800-01
Chr03	irgsp1_rep	three_prime_UTR	35817319	35817577	.	-	.	Parent=Os03t0850800-01
Chr03	irgsp1_rep	mRNA	35820760	35821517	.	+	.	ID=Os03t0850900-01;Name=Os03t0850900-01;Locus_id=Os03g0850900;CGSNL Gene Symbol=UCL12;CGSNL Gene Name=UCLACYANIN-LIKE PROTEIN 12;Oryzabase Gene Symbol Synonym(s)=OsUCL12;Oryzabase Gene Name Synonym(s)=uclacyanin-like protein 12%2C plastocyanin-like domain containing protein;Note=Similar to Chemocyanin precursor (Basic blue protein) (Plantacyanin).;Transcript_evidence=AK062526 (DDBJ%2C Best hit);ORF_evidence=NP_001149596.1 (RefSeq);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Blue (type 1) copper domain (IPR000923),Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);NIAS_FLcDNA=001-104-D10;Oryzabase=9761;Expression=AK062526;TENOR=Os03t0850900-01;KEGG=Os03t0850900-01
Chr03	irgsp1_rep	five_prime_UTR	35820760	35820854	.	+	.	Parent=Os03t0850900-01
Chr03	irgsp1_rep	CDS	35820855	35821232	.	+	0	Parent=Os03t0850900-01
Chr03	irgsp1_rep	three_prime_UTR	35821233	35821517	.	+	.	Parent=Os03t0850900-01
Chr03	irgsp1_rep	mRNA	35822112	35824355	.	+	.	ID=Os03t0851000-01;Name=Os03t0851000-01;Locus_id=Os03g0851000;Oryzabase Gene Symbol Synonym(s)=Osj3g2BTF3%2C BTF3b%2C Os03g2BTF3;Oryzabase Gene Name Synonym(s)=Transcription factor BTF3b;Note=Similar to Transcription factor homolog BTF3-like protein.;Transcript_evidence=AK060496 (DDBJ%2C Best hit);ORF_evidence=Q10AI8 (UniProt);InterPro=Nascent polypeptide-associated complex NAC (IPR002715);NIAS_FLcDNA=001-016-F11;Oryzabase=14359;Expression=AK060496;TENOR=Os03t0851000-01;KEGG=Os03t0851000-01
Chr03	irgsp1_rep	five_prime_UTR	35822112	35822225	.	+	.	Parent=Os03t0851000-01
Chr03	irgsp1_rep	CDS	35822457	35822524	.	+	0	Parent=Os03t0851000-01
Chr03	irgsp1_rep	CDS	35822625	35822773	.	+	1	Parent=Os03t0851000-01
Chr03	irgsp1_rep	CDS	35822871	35822927	.	+	2	Parent=Os03t0851000-01
Chr03	irgsp1_rep	CDS	35823308	35823346	.	+	2	Parent=Os03t0851000-01
Chr03	irgsp1_rep	CDS	35823839	35824002	.	+	2	Parent=Os03t0851000-01
Chr03	irgsp1_rep	three_prime_UTR	35824003	35824355	.	+	.	Parent=Os03t0851000-01
Chr03	irgsp1_rep	mRNA	35822138	35824240	.	+	.	ID=Os03t0851000-02;Name=Os03t0851000-02;Locus_id=Os03g0851000;Oryzabase Gene Symbol Synonym(s)=Osj3g2BTF3%2C BTF3b%2C Os03g2BTF3;Oryzabase Gene Name Synonym(s)=Transcription factor BTF3b;Note=Similar to Transcription factor homolog BTF3-like protein.;Transcript_evidence=AK102202 (DDBJ%2C Best hit),AK104157 (DDBJ%2C Best hit);ORF_evidence=Q10AI8 (UniProt);InterPro=Nascent polypeptide-associated complex NAC (IPR002715);NIAS_FLcDNA=J033087F19,006-210-C10;Oryzabase=14359;Expression=AK102202;TENOR=Os03t0851000-02;KEGG=Os03t0851000-02
Chr03	irgsp1_rep	five_prime_UTR	35822138	35822225	.	+	.	Parent=Os03t0851000-02
Chr03	irgsp1_rep	CDS	35822457	35822524	.	+	0	Parent=Os03t0851000-02
Chr03	irgsp1_rep	CDS	35822625	35822773	.	+	1	Parent=Os03t0851000-02
Chr03	irgsp1_rep	CDS	35822871	35822927	.	+	2	Parent=Os03t0851000-02
Chr03	irgsp1_rep	CDS	35823308	35823346	.	+	2	Parent=Os03t0851000-02
Chr03	irgsp1_rep	CDS	35823839	35824002	.	+	2	Parent=Os03t0851000-02
Chr03	irgsp1_rep	three_prime_UTR	35824003	35824240	.	+	.	Parent=Os03t0851000-02
Chr03	irgsp1_rep	mRNA	35826423	35830202	.	-	.	ID=Os03t0851100-01;Name=Os03t0851100-01;Locus_id=Os03g0851100;Note=Similar to Translational elongation factor EF-TuM.;Transcript_evidence=AK102069 (DDBJ%2C Best hit);ORF_evidence=Q8W2C4 (UniProt);GO=Biological Process: translational elongation (GO:0006414),Cellular Component: intracellular (GO:0005622),Molecular Function: translation elongation factor activity (GO:0003746),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Protein synthesis factor%2C GTP-binding (IPR000795),Translation elongation factor EFTu/EF1A%2C C-terminal (IPR004160),Translation elongation factor EFTu/EF1A%2C domain 2 (IPR004161),Translation elongation factor EFTu/EF1A%2C bacterial/organelle (IPR004541),Small GTP-binding protein domain (IPR005225),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Translation elongation factor EF1A/initiation factor IF2gamma%2C C-terminal (IPR009001);NIAS_FLcDNA=J033082G06;Expression=AK102069;TENOR=Os03t0851100-01;KEGG=Os03t0851100-01 (EC:3.6.5.3)
Chr03	irgsp1_rep	five_prime_UTR	35830121	35830202	.	-	.	Parent=Os03t0851100-01
Chr03	irgsp1_rep	CDS	35829930	35830120	.	-	0	Parent=Os03t0851100-01
Chr03	irgsp1_rep	CDS	35829729	35829804	.	-	1	Parent=Os03t0851100-01
Chr03	irgsp1_rep	CDS	35829543	35829635	.	-	0	Parent=Os03t0851100-01
Chr03	irgsp1_rep	CDS	35829367	35829441	.	-	0	Parent=Os03t0851100-01
Chr03	irgsp1_rep	CDS	35828991	35829095	.	-	0	Parent=Os03t0851100-01
Chr03	irgsp1_rep	CDS	35828792	35828882	.	-	0	Parent=Os03t0851100-01
Chr03	irgsp1_rep	CDS	35828500	35828705	.	-	2	Parent=Os03t0851100-01
Chr03	irgsp1_rep	CDS	35827925	35828008	.	-	0	Parent=Os03t0851100-01
Chr03	irgsp1_rep	CDS	35827459	35827524	.	-	0	Parent=Os03t0851100-01
Chr03	irgsp1_rep	CDS	35827321	35827383	.	-	0	Parent=Os03t0851100-01
Chr03	irgsp1_rep	CDS	35826894	35827134	.	-	0	Parent=Os03t0851100-01
Chr03	irgsp1_rep	CDS	35826734	35826804	.	-	2	Parent=Os03t0851100-01
Chr03	irgsp1_rep	three_prime_UTR	35826423	35826733	.	-	.	Parent=Os03t0851100-01
Chr03	irgsp1_rep	mRNA	35826423	35827524	.	-	.	ID=Os03t0851100-02;Name=Os03t0851100-02;Locus_id=Os03g0851100;Note=Similar to Elongation factor Tu.;Transcript_evidence=AK058640 (DDBJ%2C Best hit);ORF_evidence=Q8W2C4 (UniProt);GO=Biological Process: translational elongation (GO:0006414),Cellular Component: intracellular (GO:0005622),Molecular Function: translation elongation factor activity (GO:0003746),Molecular Function: GTP binding (GO:0005525);InterPro=Translation elongation factor EFTu/EF1A%2C C-terminal (IPR004160),Translation elongation factor EFTu/EF1A%2C domain 2 (IPR004161),Translation elongation factor EFTu/EF1A%2C bacterial/organelle (IPR004541),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Translation elongation factor EF1A/initiation factor IF2gamma%2C C-terminal (IPR009001);NIAS_FLcDNA=001-018-D12;Expression=AK058640;TENOR=Os03t0851100-02;KEGG=Os03t0851100-02 (EC:3.6.5.3)
Chr03	irgsp1_rep	CDS	35827459	35827524	.	-	0	Parent=Os03t0851100-02
Chr03	irgsp1_rep	CDS	35827321	35827383	.	-	0	Parent=Os03t0851100-02
Chr03	irgsp1_rep	CDS	35826894	35827134	.	-	0	Parent=Os03t0851100-02
Chr03	irgsp1_rep	CDS	35826734	35826804	.	-	2	Parent=Os03t0851100-02
Chr03	irgsp1_rep	three_prime_UTR	35826423	35826733	.	-	.	Parent=Os03t0851100-02
Chr03	irgsp1_rep	mRNA	35826465	35830218	.	+	.	ID=Os03t0851150-00;Name=Os03t0851150-00;Locus_id=Os03g0851150;Note=Non-protein coding transcript.;Transcript_evidence=AK332140 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0851150-00
Chr03	irgsp1_rep	exon	35826465	35826799	.	+	.	Parent=Os03t0851150-00
Chr03	irgsp1_rep	exon	35826889	35827121	.	+	.	Parent=Os03t0851150-00
Chr03	irgsp1_rep	exon	35827311	35827374	.	+	.	Parent=Os03t0851150-00
Chr03	irgsp1_rep	exon	35827452	35827526	.	+	.	Parent=Os03t0851150-00
Chr03	irgsp1_rep	exon	35827930	35827997	.	+	.	Parent=Os03t0851150-00
Chr03	irgsp1_rep	exon	35828492	35828707	.	+	.	Parent=Os03t0851150-00
Chr03	irgsp1_rep	exon	35828794	35828866	.	+	.	Parent=Os03t0851150-00
Chr03	irgsp1_rep	exon	35828980	35829103	.	+	.	Parent=Os03t0851150-00
Chr03	irgsp1_rep	exon	35829381	35829426	.	+	.	Parent=Os03t0851150-00
Chr03	irgsp1_rep	exon	35829530	35829629	.	+	.	Parent=Os03t0851150-00
Chr03	irgsp1_rep	exon	35829724	35829780	.	+	.	Parent=Os03t0851150-00
Chr03	irgsp1_rep	exon	35829902	35830218	.	+	.	Parent=Os03t0851150-00
Chr03	irgsp1_rep	mRNA	35830364	35832497	.	+	.	ID=Os03t0851200-01;Name=Os03t0851200-01;Locus_id=Os03g0851200;CGSNL Gene Symbol=GRX11;CGSNL Gene Name=GLUTAREDOXIN 11;Oryzabase Gene Symbol Synonym(s)=OsGRX11;Oryzabase Gene Name Synonym(s)=glutaredoxin 11;Note=Similar to CAXIP1 protein.;Transcript_evidence=AK059425 (DDBJ%2C Best hit);ORF_evidence=Q851Y7 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin (IPR002109),Monothiol glutaredoxin-related (IPR004480),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=001-027-E07;Oryzabase=13582;Expression=AK059425;TENOR=Os03t0851200-01;KEGG=Os03t0851200-01
Chr03	irgsp1_rep	five_prime_UTR	35830364	35830433	.	+	.	Parent=Os03t0851200-01
Chr03	irgsp1_rep	CDS	35830434	35830884	.	+	0	Parent=Os03t0851200-01
Chr03	irgsp1_rep	CDS	35832155	35832210	.	+	2	Parent=Os03t0851200-01
Chr03	irgsp1_rep	three_prime_UTR	35832211	35832497	.	+	.	Parent=Os03t0851200-01
Chr03	irgsp1_rep	mRNA	35833974	35837995	.	-	.	ID=Os03t0851300-01;Name=Os03t0851300-01;Locus_id=Os03g0851300;CGSNL Gene Symbol=RPN5;CGSNL Gene Name=19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 5;Oryzabase Gene Symbol Synonym(s)=OsRpn5%2C Rpn5;Oryzabase Gene Name Synonym(s)=19S regulatory particle non-ATPase subunit 5%2C RP non-ATPase 5;Note=Winged helix repressor DNA-binding domain containing protein.;Transcript_evidence=AK071162 (DDBJ%2C Best hit);ORF_evidence=B3TM04 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Proteasome component (PCI) domain (IPR000717),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=J023081N11;Oryzabase=20565;Expression=AK071162;TENOR=Os03t0851300-01;KEGG=Os03t0851300-01
Chr03	irgsp1_rep	five_prime_UTR	35837840	35837995	.	-	.	Parent=Os03t0851300-01
Chr03	irgsp1_rep	CDS	35837837	35837839	.	-	0	Parent=Os03t0851300-01
Chr03	irgsp1_rep	CDS	35837466	35837663	.	-	0	Parent=Os03t0851300-01
Chr03	irgsp1_rep	CDS	35836639	35836746	.	-	0	Parent=Os03t0851300-01
Chr03	irgsp1_rep	CDS	35836445	35836549	.	-	0	Parent=Os03t0851300-01
Chr03	irgsp1_rep	CDS	35836285	35836341	.	-	0	Parent=Os03t0851300-01
Chr03	irgsp1_rep	CDS	35836008	35836204	.	-	0	Parent=Os03t0851300-01
Chr03	irgsp1_rep	CDS	35835302	35835401	.	-	1	Parent=Os03t0851300-01
Chr03	irgsp1_rep	CDS	35835094	35835206	.	-	0	Parent=Os03t0851300-01
Chr03	irgsp1_rep	CDS	35834853	35835006	.	-	1	Parent=Os03t0851300-01
Chr03	irgsp1_rep	CDS	35834687	35834764	.	-	0	Parent=Os03t0851300-01
Chr03	irgsp1_rep	CDS	35834374	35834592	.	-	0	Parent=Os03t0851300-01
Chr03	irgsp1_rep	three_prime_UTR	35833974	35834373	.	-	.	Parent=Os03t0851300-01
Chr03	irgsp1_rep	mRNA	35834183	35837962	.	-	.	ID=Os03t0851300-02;Name=Os03t0851300-02;Locus_id=Os03g0851300;CGSNL Gene Symbol=RPN5;CGSNL Gene Name=19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 5;Oryzabase Gene Symbol Synonym(s)=OsRpn5%2C Rpn5;Oryzabase Gene Name Synonym(s)=19S regulatory particle non-ATPase subunit 5%2C RP non-ATPase 5;Note=Winged helix repressor DNA-binding domain containing protein.;Transcript_evidence=AK073581 (DDBJ%2C Best hit);ORF_evidence=B3TM04 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Proteasome component (PCI) domain (IPR000717),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=J033048G13;Oryzabase=20565;Expression=AK073581;TENOR=Os03t0851300-02;KEGG=Os03t0851300-02
Chr03	irgsp1_rep	five_prime_UTR	35837840	35837962	.	-	.	Parent=Os03t0851300-02
Chr03	irgsp1_rep	CDS	35837837	35837839	.	-	0	Parent=Os03t0851300-02
Chr03	irgsp1_rep	CDS	35837466	35837663	.	-	0	Parent=Os03t0851300-02
Chr03	irgsp1_rep	CDS	35836639	35836746	.	-	0	Parent=Os03t0851300-02
Chr03	irgsp1_rep	CDS	35836445	35836549	.	-	0	Parent=Os03t0851300-02
Chr03	irgsp1_rep	CDS	35836285	35836341	.	-	0	Parent=Os03t0851300-02
Chr03	irgsp1_rep	CDS	35836008	35836204	.	-	0	Parent=Os03t0851300-02
Chr03	irgsp1_rep	CDS	35835302	35835401	.	-	1	Parent=Os03t0851300-02
Chr03	irgsp1_rep	CDS	35835094	35835206	.	-	0	Parent=Os03t0851300-02
Chr03	irgsp1_rep	CDS	35834853	35835006	.	-	1	Parent=Os03t0851300-02
Chr03	irgsp1_rep	CDS	35834687	35834764	.	-	0	Parent=Os03t0851300-02
Chr03	irgsp1_rep	CDS	35834374	35834592	.	-	0	Parent=Os03t0851300-02
Chr03	irgsp1_rep	three_prime_UTR	35834183	35834373	.	-	.	Parent=Os03t0851300-02
Chr03	irgsp1_rep	mRNA	35834116	35837939	.	-	.	ID=Os03t0851300-03;Name=Os03t0851300-03;Locus_id=Os03g0851300;CGSNL Gene Symbol=RPN5;CGSNL Gene Name=19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 5;Oryzabase Gene Symbol Synonym(s)=OsRpn5%2C Rpn5;Oryzabase Gene Name Synonym(s)=19S regulatory particle non-ATPase subunit 5%2C RP non-ATPase 5;Note=Winged helix repressor DNA-binding domain containing protein.;Transcript_evidence=AK104846 (DDBJ%2C Best hit);ORF_evidence=B3TM04 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Proteasome component (PCI) domain (IPR000717),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=001-042-H04;Oryzabase=20565;Expression=AK104846;TENOR=Os03t0851300-03;KEGG=Os03t0851300-03
Chr03	irgsp1_rep	five_prime_UTR	35837840	35837939	.	-	.	Parent=Os03t0851300-03
Chr03	irgsp1_rep	CDS	35837837	35837839	.	-	0	Parent=Os03t0851300-03
Chr03	irgsp1_rep	CDS	35837466	35837663	.	-	0	Parent=Os03t0851300-03
Chr03	irgsp1_rep	CDS	35836639	35836746	.	-	0	Parent=Os03t0851300-03
Chr03	irgsp1_rep	CDS	35836445	35836549	.	-	0	Parent=Os03t0851300-03
Chr03	irgsp1_rep	CDS	35836285	35836341	.	-	0	Parent=Os03t0851300-03
Chr03	irgsp1_rep	CDS	35836008	35836204	.	-	0	Parent=Os03t0851300-03
Chr03	irgsp1_rep	CDS	35835302	35835401	.	-	1	Parent=Os03t0851300-03
Chr03	irgsp1_rep	CDS	35835094	35835206	.	-	0	Parent=Os03t0851300-03
Chr03	irgsp1_rep	CDS	35834853	35835006	.	-	1	Parent=Os03t0851300-03
Chr03	irgsp1_rep	CDS	35834687	35834764	.	-	0	Parent=Os03t0851300-03
Chr03	irgsp1_rep	CDS	35834374	35834592	.	-	0	Parent=Os03t0851300-03
Chr03	irgsp1_rep	three_prime_UTR	35834116	35834373	.	-	.	Parent=Os03t0851300-03
Chr03	irgsp1_rep	mRNA	35836111	35837929	.	-	.	ID=Os03t0851300-04;Name=Os03t0851300-04;Locus_id=Os03g0851300;CGSNL Gene Symbol=RPN5;CGSNL Gene Name=19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 5;Oryzabase Gene Symbol Synonym(s)=OsRpn5%2C Rpn5;Oryzabase Gene Name Synonym(s)=19S regulatory particle non-ATPase subunit 5%2C RP non-ATPase 5;Note=Similar to 26S proteasome subunit RPN5b.;Transcript_evidence=AK105457 (DDBJ%2C Best hit);ORF_evidence=B3TM04 (UniProt);NIAS_FLcDNA=001-125-E03;Oryzabase=20565;TENOR=Os03t0851300-04
Chr03	irgsp1_rep	five_prime_UTR	35837840	35837929	.	-	.	Parent=Os03t0851300-04
Chr03	irgsp1_rep	CDS	35837837	35837839	.	-	0	Parent=Os03t0851300-04
Chr03	irgsp1_rep	CDS	35837466	35837663	.	-	0	Parent=Os03t0851300-04
Chr03	irgsp1_rep	CDS	35836639	35836746	.	-	0	Parent=Os03t0851300-04
Chr03	irgsp1_rep	CDS	35836445	35836549	.	-	0	Parent=Os03t0851300-04
Chr03	irgsp1_rep	CDS	35836285	35836341	.	-	0	Parent=Os03t0851300-04
Chr03	irgsp1_rep	CDS	35836111	35836204	.	-	0	Parent=Os03t0851300-04
Chr03	irgsp1_rep	mRNA	35840625	35843776	.	+	.	ID=Os03t0851400-01;Name=Os03t0851400-01;Locus_id=Os03g0851400;Note=Hypothetical conserved gene.;Transcript_evidence=AK241949 (DDBJ%2C Best hit);ORF_evidence=A2XP49 (UniProt);InterPro=Frigida-like (IPR012474);NIAS_FLcDNA=J075091A15;TENOR=Os03t0851400-01;KEGG=Os03t0851400-01
Chr03	irgsp1_rep	five_prime_UTR	35840625	35840650	.	+	.	Parent=Os03t0851400-01
Chr03	irgsp1_rep	CDS	35840651	35841527	.	+	0	Parent=Os03t0851400-01
Chr03	irgsp1_rep	CDS	35841635	35841807	.	+	2	Parent=Os03t0851400-01
Chr03	irgsp1_rep	CDS	35843133	35843399	.	+	0	Parent=Os03t0851400-01
Chr03	irgsp1_rep	three_prime_UTR	35843400	35843776	.	+	.	Parent=Os03t0851400-01
Chr03	irgsp1_rep	mRNA	35846462	35854184	.	+	.	ID=Os03t0851500-01;Name=Os03t0851500-01;Locus_id=Os03g0851500;RAP-DB Gene Symbol Synonym(s)=OsRad52-2a;RAP-DB Gene Name Synonym(s)=Radiation sensitive 52-2a;CGSNL Gene Symbol=RAD52-2A;CGSNL Gene Name=RADIATION SENSITIVE 52-2A;Oryzabase Gene Symbol Synonym(s)=OsRad52-2a;Oryzabase Gene Name Synonym(s)=Radiation sensitive 52-2a;Note=Homolog of Rad52 (Radiation sensitive 52)%2C Mediation of homologous recombination and DNA repair%2C;Transcript_evidence=AK071441,AK070236;ORF_evidence=Q10AI2;NIAS_FLcDNA=J023090M02, J023043F20;Manual Curation=June 21%2C 2017;Literature_PMID=27156135;Oryzabase=22609;Expression=AK071441, AK070236;TENOR=Os03t0851500-01;KEGG=Os03t0851500-01
Chr03	irgsp1_rep	five_prime_UTR	35846462	35846545	.	+	.	Parent=Os03t0851500-01
Chr03	irgsp1_rep	CDS	35846546	35846847	.	+	0	Parent=Os03t0851500-01
Chr03	irgsp1_rep	CDS	35847076	35847113	.	+	1	Parent=Os03t0851500-01
Chr03	irgsp1_rep	CDS	35847856	35847947	.	+	2	Parent=Os03t0851500-01
Chr03	irgsp1_rep	CDS	35853756	35853902	.	+	0	Parent=Os03t0851500-01
Chr03	irgsp1_rep	three_prime_UTR	35853903	35854184	.	+	.	Parent=Os03t0851500-01
Chr03	irgsp1_rep	mRNA	35855516	35860486	.	+	.	ID=Os03t0851600-01;Name=Os03t0851600-01;Locus_id=Os03g0851600;Oryzabase Gene Symbol Synonym(s)=OsWD40-96;Note=Hypothetical conserved gene.;Transcript_evidence=AK101177 (DDBJ%2C Best hit);ORF_evidence=Q851Y2 (UniProt);NIAS_FLcDNA=J033029A19;Oryzabase=10777;Expression=AK101177;TENOR=Os03t0851600-01;KEGG=Os03t0851600-01
Chr03	irgsp1_rep	five_prime_UTR	35855516	35855588	.	+	.	Parent=Os03t0851600-01
Chr03	irgsp1_rep	CDS	35855589	35855846	.	+	0	Parent=Os03t0851600-01
Chr03	irgsp1_rep	CDS	35855937	35856261	.	+	0	Parent=Os03t0851600-01
Chr03	irgsp1_rep	CDS	35856361	35856514	.	+	2	Parent=Os03t0851600-01
Chr03	irgsp1_rep	CDS	35857477	35857525	.	+	1	Parent=Os03t0851600-01
Chr03	irgsp1_rep	three_prime_UTR	35857526	35858509	.	+	.	Parent=Os03t0851600-01
Chr03	irgsp1_rep	three_prime_UTR	35859171	35859532	.	+	.	Parent=Os03t0851600-01
Chr03	irgsp1_rep	three_prime_UTR	35859800	35860486	.	+	.	Parent=Os03t0851600-01
Chr03	irgsp1_rep	mRNA	35855784	35860488	.	+	.	ID=Os03t0851600-02;Name=Os03t0851600-02;Locus_id=Os03g0851600;Oryzabase Gene Symbol Synonym(s)=OsWD40-96;Note=Similar to WD-40 repeat family protein.;Transcript_evidence=AK112094 (DDBJ%2C Best hit);ORF_evidence=NP_199910.2 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781);NIAS_FLcDNA=002-107-D04;Oryzabase=10777;TENOR=Os03t0851600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	35855784	35855846	.	+	.	Parent=Os03t0851600-02
Chr03	irgsp1_rep	five_prime_UTR	35855937	35856161	.	+	.	Parent=Os03t0851600-02
Chr03	irgsp1_rep	CDS	35856162	35856261	.	+	0	Parent=Os03t0851600-02
Chr03	irgsp1_rep	CDS	35856361	35856514	.	+	2	Parent=Os03t0851600-02
Chr03	irgsp1_rep	CDS	35857477	35857521	.	+	1	Parent=Os03t0851600-02
Chr03	irgsp1_rep	CDS	35858347	35858509	.	+	1	Parent=Os03t0851600-02
Chr03	irgsp1_rep	CDS	35859171	35859532	.	+	0	Parent=Os03t0851600-02
Chr03	irgsp1_rep	CDS	35859800	35860118	.	+	1	Parent=Os03t0851600-02
Chr03	irgsp1_rep	three_prime_UTR	35860119	35860488	.	+	.	Parent=Os03t0851600-02
Chr03	irgsp1_rep	mRNA	35861615	35864088	.	+	.	ID=Os03t0851700-01;Name=Os03t0851700-01;Locus_id=Os03g0851700;RAP-DB Gene Symbol Synonym(s)=Xbos251%2C XBOS251;Oryzabase Gene Symbol Synonym(s)=Xbos251%2C XBOS251;Note=Xb25 paralog;Transcript_evidence=AK068082;ORF_evidence=Q851Y1;GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat-containing domain superfamily (IPR036770),STI1 domain (IPR041243),Ankyrin repeat-containing domain (IPR020683),Ankyrin repeat (IPR002110);NIAS_FLcDNA=J013130D01;Manual Curation=August 3%2C 2020;Literature_PMID=23206229;Oryzabase=21677;Expression=AK068082;TENOR=Os03t0851700-01;KEGG=Os03t0851700-01
Chr03	irgsp1_rep	five_prime_UTR	35861615	35861652	.	+	.	Parent=Os03t0851700-01
Chr03	irgsp1_rep	CDS	35861653	35861665	.	+	0	Parent=Os03t0851700-01
Chr03	irgsp1_rep	CDS	35861781	35861920	.	+	2	Parent=Os03t0851700-01
Chr03	irgsp1_rep	CDS	35862254	35862639	.	+	0	Parent=Os03t0851700-01
Chr03	irgsp1_rep	CDS	35862745	35862925	.	+	1	Parent=Os03t0851700-01
Chr03	irgsp1_rep	CDS	35863313	35863405	.	+	0	Parent=Os03t0851700-01
Chr03	irgsp1_rep	CDS	35863482	35863621	.	+	0	Parent=Os03t0851700-01
Chr03	irgsp1_rep	CDS	35863721	35863820	.	+	1	Parent=Os03t0851700-01
Chr03	irgsp1_rep	three_prime_UTR	35863821	35864088	.	+	.	Parent=Os03t0851700-01
Chr03	irgsp1_rep	mRNA	35861777	35863821	.	-	.	ID=Os03t0851750-00;Name=Os03t0851750-00;Locus_id=Os03g0851750;Note=Hypothetical protein.;Transcript_evidence=tplb0040b24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os03t0851750-00
Chr03	irgsp1_rep	five_prime_UTR	35863734	35863821	.	-	.	Parent=Os03t0851750-00
Chr03	irgsp1_rep	five_prime_UTR	35863632	35863636	.	-	.	Parent=Os03t0851750-00
Chr03	irgsp1_rep	CDS	35863480	35863631	.	-	0	Parent=Os03t0851750-00
Chr03	irgsp1_rep	CDS	35863294	35863403	.	-	1	Parent=Os03t0851750-00
Chr03	irgsp1_rep	CDS	35862745	35862902	.	-	2	Parent=Os03t0851750-00
Chr03	irgsp1_rep	CDS	35862252	35862639	.	-	0	Parent=Os03t0851750-00
Chr03	irgsp1_rep	CDS	35861839	35861918	.	-	2	Parent=Os03t0851750-00
Chr03	irgsp1_rep	three_prime_UTR	35861777	35861838	.	-	.	Parent=Os03t0851750-00
Chr03	irgsp1_rep	mRNA	35865202	35867774	.	+	.	ID=Os03t0851800-01;Name=Os03t0851800-01;Locus_id=Os03g0851800;Oryzabase Gene Symbol Synonym(s)=panC%2C PS;Oryzabase Gene Name Synonym(s)=pantothenate synthetase;Note=Similar to Pantoate--beta-alanine ligase (EC 6.3.2.1) (Pantothenate synthetase) (Pantoate activating enzyme).;Transcript_evidence=AK066656 (DDBJ%2C Best hit);ORF_evidence=O24210 (UniProt);GO=Biological Process: pantothenate biosynthetic process (GO:0015940),Molecular Function: pantoate-beta-alanine ligase activity (GO:0004592);InterPro=Pantoate-beta-alanine ligase (IPR003721),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J013072H13;Oryzabase=13839;Expression=AK066656;TENOR=Os03t0851800-01;KEGG=Os03t0851800-01 (EC:6.3.2.1)
Chr03	irgsp1_rep	five_prime_UTR	35865202	35865259	.	+	.	Parent=Os03t0851800-01
Chr03	irgsp1_rep	CDS	35865260	35865832	.	+	0	Parent=Os03t0851800-01
Chr03	irgsp1_rep	CDS	35866658	35866771	.	+	0	Parent=Os03t0851800-01
Chr03	irgsp1_rep	CDS	35867071	35867202	.	+	0	Parent=Os03t0851800-01
Chr03	irgsp1_rep	CDS	35867433	35867555	.	+	0	Parent=Os03t0851800-01
Chr03	irgsp1_rep	three_prime_UTR	35867556	35867774	.	+	.	Parent=Os03t0851800-01
Chr03	irgsp1_rep	mRNA	35865273	35867786	.	+	.	ID=Os03t0851800-02;Name=Os03t0851800-02;Locus_id=Os03g0851800;Oryzabase Gene Symbol Synonym(s)=panC%2C PS;Oryzabase Gene Name Synonym(s)=pantothenate synthetase;Note=Similar to Pantoate--beta-alanine ligase.;Transcript_evidence=AK104812 (DDBJ%2C Best hit);ORF_evidence=O24210 (UniProt);GO=Biological Process: pantothenate biosynthetic process (GO:0015940),Molecular Function: pantoate-beta-alanine ligase activity (GO:0004592);InterPro=Pantoate-beta-alanine ligase (IPR003721),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=001-040-G05;Oryzabase=13839;Expression=AK104812;TENOR=Os03t0851800-02;KEGG=Os03t0851800-02 (EC:6.3.2.1)
Chr03	irgsp1_rep	five_prime_UTR	35865273	35865274	.	+	.	Parent=Os03t0851800-02
Chr03	irgsp1_rep	CDS	35865275	35865832	.	+	0	Parent=Os03t0851800-02
Chr03	irgsp1_rep	CDS	35866658	35866771	.	+	0	Parent=Os03t0851800-02
Chr03	irgsp1_rep	CDS	35867071	35867202	.	+	0	Parent=Os03t0851800-02
Chr03	irgsp1_rep	CDS	35867433	35867555	.	+	0	Parent=Os03t0851800-02
Chr03	irgsp1_rep	three_prime_UTR	35867556	35867786	.	+	.	Parent=Os03t0851800-02
Chr03	irgsp1_rep	mRNA	35868734	35875491	.	-	.	ID=Os03t0851900-01;Name=Os03t0851900-01;Locus_id=Os03g0851900;Note=ATPase%2C AFG1-like domain containing protein.;Transcript_evidence=AK102145 (DDBJ%2C Best hit);ORF_evidence=NP_001151926.1 (RefSeq);GO=Molecular Function: ATP binding (GO:0005524);InterPro=ATPase%2C AFG1-like (IPR005654);NIAS_FLcDNA=J033086B08;Expression=AK102145;TENOR=Os03t0851900-01;KEGG=Os03t0851900-01
Chr03	irgsp1_rep	five_prime_UTR	35875395	35875491	.	-	.	Parent=Os03t0851900-01
Chr03	irgsp1_rep	CDS	35875229	35875394	.	-	0	Parent=Os03t0851900-01
Chr03	irgsp1_rep	CDS	35874816	35874952	.	-	2	Parent=Os03t0851900-01
Chr03	irgsp1_rep	CDS	35874588	35874721	.	-	0	Parent=Os03t0851900-01
Chr03	irgsp1_rep	CDS	35874059	35874204	.	-	1	Parent=Os03t0851900-01
Chr03	irgsp1_rep	CDS	35873810	35873889	.	-	2	Parent=Os03t0851900-01
Chr03	irgsp1_rep	CDS	35873268	35873525	.	-	0	Parent=Os03t0851900-01
Chr03	irgsp1_rep	CDS	35872555	35872666	.	-	0	Parent=Os03t0851900-01
Chr03	irgsp1_rep	CDS	35871958	35872079	.	-	2	Parent=Os03t0851900-01
Chr03	irgsp1_rep	CDS	35871139	35871260	.	-	0	Parent=Os03t0851900-01
Chr03	irgsp1_rep	CDS	35870998	35871067	.	-	1	Parent=Os03t0851900-01
Chr03	irgsp1_rep	CDS	35870667	35870759	.	-	0	Parent=Os03t0851900-01
Chr03	irgsp1_rep	CDS	35870173	35870300	.	-	0	Parent=Os03t0851900-01
Chr03	irgsp1_rep	CDS	35869903	35870044	.	-	1	Parent=Os03t0851900-01
Chr03	irgsp1_rep	CDS	35868899	35869030	.	-	0	Parent=Os03t0851900-01
Chr03	irgsp1_rep	three_prime_UTR	35868734	35868898	.	-	.	Parent=Os03t0851900-01
Chr03	irgsp1_rep	mRNA	35868698	35874083	.	-	.	ID=Os03t0851900-02;Name=Os03t0851900-02;Locus_id=Os03g0851900;Note=Similar to ATPase.;Transcript_evidence=AK059105 (DDBJ%2C Best hit);ORF_evidence=NP_001151926.1 (RefSeq);GO=Molecular Function: ATP binding (GO:0005524);InterPro=ATPase%2C AFG1-like (IPR005654);NIAS_FLcDNA=001-022-D06;Expression=AK059105;TENOR=Os03t0851900-02;KEGG=Os03t0851900-02
Chr03	irgsp1_rep	CDS	35874059	35874083	.	-	0	Parent=Os03t0851900-02
Chr03	irgsp1_rep	CDS	35873810	35873889	.	-	2	Parent=Os03t0851900-02
Chr03	irgsp1_rep	CDS	35873268	35873525	.	-	0	Parent=Os03t0851900-02
Chr03	irgsp1_rep	CDS	35872555	35872666	.	-	0	Parent=Os03t0851900-02
Chr03	irgsp1_rep	CDS	35871958	35872079	.	-	2	Parent=Os03t0851900-02
Chr03	irgsp1_rep	CDS	35871139	35871260	.	-	0	Parent=Os03t0851900-02
Chr03	irgsp1_rep	CDS	35870998	35871067	.	-	1	Parent=Os03t0851900-02
Chr03	irgsp1_rep	CDS	35870667	35870759	.	-	0	Parent=Os03t0851900-02
Chr03	irgsp1_rep	CDS	35870173	35870300	.	-	0	Parent=Os03t0851900-02
Chr03	irgsp1_rep	CDS	35869903	35870044	.	-	1	Parent=Os03t0851900-02
Chr03	irgsp1_rep	CDS	35868899	35869030	.	-	0	Parent=Os03t0851900-02
Chr03	irgsp1_rep	three_prime_UTR	35868698	35868898	.	-	.	Parent=Os03t0851900-02
Chr03	irgsp1_rep	mRNA	35877598	35882905	.	-	.	ID=Os03t0852000-01;Name=Os03t0852000-01;Locus_id=Os03g0852000;Note=Similar to Pentatricopeptide (PPR) repeat-containing protein.;Transcript_evidence=AK100922 (DDBJ%2C Best hit);ORF_evidence=E5GBQ5 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J023133O06;TENOR=Os03t0852000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	35882811	35882905	.	-	.	Parent=Os03t0852000-01
Chr03	irgsp1_rep	CDS	35881507	35882810	.	-	0	Parent=Os03t0852000-01
Chr03	irgsp1_rep	CDS	35881381	35881393	.	-	1	Parent=Os03t0852000-01
Chr03	irgsp1_rep	three_prime_UTR	35881296	35881380	.	-	.	Parent=Os03t0852000-01
Chr03	irgsp1_rep	three_prime_UTR	35877981	35878474	.	-	.	Parent=Os03t0852000-01
Chr03	irgsp1_rep	three_prime_UTR	35877598	35877865	.	-	.	Parent=Os03t0852000-01
Chr03	irgsp1_rep	mRNA	35877545	35878284	.	-	.	ID=Os03t0852000-02;Name=Os03t0852000-02;Locus_id=Os03g0852000;Note=Similar to Hydroxyproline-rich glycoprotein.;Transcript_evidence=AK063830 (DDBJ%2C Best hit);ORF_evidence=A9YWR1 (UniProt);NIAS_FLcDNA=001-122-B01;Expression=AK063830;TENOR=Os03t0852000-02;KEGG=Os03t0852000-02
Chr03	irgsp1_rep	five_prime_UTR	35878269	35878284	.	-	.	Parent=Os03t0852000-02
Chr03	irgsp1_rep	CDS	35877981	35878268	.	-	0	Parent=Os03t0852000-02
Chr03	irgsp1_rep	CDS	35877704	35877865	.	-	0	Parent=Os03t0852000-02
Chr03	irgsp1_rep	three_prime_UTR	35877545	35877703	.	-	.	Parent=Os03t0852000-02
Chr03	irgsp1_rep	mRNA	35883623	35886649	.	+	.	ID=Os03t0852101-00;Name=Os03t0852101-00;Locus_id=Os03g0852101;Note=Non-protein coding transcript.;Transcript_evidence=BT019302 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0852101-00
Chr03	irgsp1_rep	exon	35883623	35884199	.	+	.	Parent=Os03t0852101-00
Chr03	irgsp1_rep	exon	35886241	35886340	.	+	.	Parent=Os03t0852101-00
Chr03	irgsp1_rep	exon	35886501	35886649	.	+	.	Parent=Os03t0852101-00
Chr03	irgsp1_rep	mRNA	35883656	35888139	.	-	.	ID=Os03t0852200-01;Name=Os03t0852200-01;Locus_id=Os03g0852200;Oryzabase Gene Symbol Synonym(s)=OsDER2%2C DER2;Oryzabase Gene Name Synonym(s)=Derlin%2C DER1-like protein 2%2C Derlin 2;Note=Der1-like domain containing protein.;Transcript_evidence=AK068059 (DDBJ%2C Best hit);ORF_evidence=Q851X7 (UniProt);InterPro=Derlin (IPR007599);NIAS_FLcDNA=J013132M16;Oryzabase=10217;Expression=AK068059;TENOR=Os03t0852200-01;KEGG=Os03t0852200-01
Chr03	irgsp1_rep	five_prime_UTR	35888092	35888139	.	-	.	Parent=Os03t0852200-01
Chr03	irgsp1_rep	CDS	35887993	35888091	.	-	0	Parent=Os03t0852200-01
Chr03	irgsp1_rep	CDS	35887774	35887873	.	-	0	Parent=Os03t0852200-01
Chr03	irgsp1_rep	CDS	35886503	35886717	.	-	2	Parent=Os03t0852200-01
Chr03	irgsp1_rep	CDS	35886259	35886342	.	-	0	Parent=Os03t0852200-01
Chr03	irgsp1_rep	CDS	35885021	35885074	.	-	0	Parent=Os03t0852200-01
Chr03	irgsp1_rep	CDS	35883968	35884165	.	-	0	Parent=Os03t0852200-01
Chr03	irgsp1_rep	three_prime_UTR	35883656	35883967	.	-	.	Parent=Os03t0852200-01
Chr03	irgsp1_rep	mRNA	35890202	35894172	.	+	.	ID=Os03t0852300-01;Name=Os03t0852300-01;Locus_id=Os03g0852300;CGSNL Gene Symbol=DPB3-2;CGSNL Gene Name=DNA POLYMERASE II SUBUNIT B3-2;Oryzabase Gene Symbol Synonym(s)=OsDPB3-2;Oryzabase Gene Name Synonym(s)=DNA polymerase II subunit B3-2;Note=Histone-fold domain containing protein.;Transcript_evidence=AK103607 (DDBJ%2C Best hit);ORF_evidence=D6MK76 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Transcription factor CBF/NF-Y/archaeal histone (IPR003958),Histone-fold (IPR009072);NIAS_FLcDNA=J033133H15;Oryzabase=21099;Expression=AK103607;TENOR=Os03t0852300-01;KEGG=Os03t0852300-01
Chr03	irgsp1_rep	five_prime_UTR	35890202	35890311	.	+	.	Parent=Os03t0852300-01
Chr03	irgsp1_rep	CDS	35890312	35891019	.	+	0	Parent=Os03t0852300-01
Chr03	irgsp1_rep	CDS	35891652	35891736	.	+	0	Parent=Os03t0852300-01
Chr03	irgsp1_rep	CDS	35893374	35893415	.	+	2	Parent=Os03t0852300-01
Chr03	irgsp1_rep	CDS	35893537	35893613	.	+	2	Parent=Os03t0852300-01
Chr03	irgsp1_rep	three_prime_UTR	35893614	35893632	.	+	.	Parent=Os03t0852300-01
Chr03	irgsp1_rep	three_prime_UTR	35893741	35894172	.	+	.	Parent=Os03t0852300-01
Chr03	irgsp1_rep	mRNA	35895803	35896803	.	-	.	ID=Os03t0852400-02;Name=Os03t0852400-02;Locus_id=Os03g0852400;CGSNL Gene Symbol=AGP31;CGSNL Gene Name=ARABINOGALACTAN PROTEIN 31;Oryzabase Gene Symbol Synonym(s)=OsAGP31;Oryzabase Gene Name Synonym(s)=Arabinogalactan protein 31;Note=Conserved hypothetical protein.;Transcript_evidence=AK109338 (DDBJ%2C Best hit),AK060985 (DDBJ%2C Best hit);ORF_evidence=B8ANQ5 (UniProt);NIAS_FLcDNA=006-202-E01,006-203-B05;Oryzabase=11324;Expression=AK109338;TENOR=Os03t0852400-02;KEGG=Os03t0852400-02
Chr03	irgsp1_rep	five_prime_UTR	35896768	35896803	.	-	.	Parent=Os03t0852400-02
Chr03	irgsp1_rep	CDS	35896108	35896767	.	-	0	Parent=Os03t0852400-02
Chr03	irgsp1_rep	three_prime_UTR	35895803	35896107	.	-	.	Parent=Os03t0852400-02
Chr03	irgsp1_rep	mRNA	35897331	35899388	.	-	.	ID=Os03t0852500-01;Name=Os03t0852500-01;Locus_id=Os03g0852500;Note=Similar to NIR3.;Transcript_evidence=AK068948 (DDBJ%2C Best hit);ORF_evidence=A3APU7 (UniProt);NIAS_FLcDNA=J023001G15;Expression=AK068948;TENOR=Os03t0852500-01;KEGG=Os03t0852500-01
Chr03	irgsp1_rep	five_prime_UTR	35899336	35899388	.	-	.	Parent=Os03t0852500-01
Chr03	irgsp1_rep	CDS	35899111	35899335	.	-	0	Parent=Os03t0852500-01
Chr03	irgsp1_rep	CDS	35897629	35897880	.	-	0	Parent=Os03t0852500-01
Chr03	irgsp1_rep	three_prime_UTR	35897331	35897628	.	-	.	Parent=Os03t0852500-01
Chr03	irgsp1_rep	mRNA	35899615	35901119	.	+	.	ID=Os03t0852600-01;Name=Os03t0852600-01;Locus_id=Os03g0852600;Note=Protein of unknown function DUF565 family protein.;Transcript_evidence=AK063101 (DDBJ%2C Best hit);ORF_evidence=XP_002466083.1 (RefSeq);InterPro=Uncharacterised protein family Ycf20 (IPR007572);NIAS_FLcDNA=001-111-C07;TENOR=Os03t0852600-01
Chr03	irgsp1_rep	five_prime_UTR	35899615	35899689	.	+	.	Parent=Os03t0852600-01
Chr03	irgsp1_rep	five_prime_UTR	35899883	35899909	.	+	.	Parent=Os03t0852600-01
Chr03	irgsp1_rep	CDS	35899910	35900076	.	+	0	Parent=Os03t0852600-01
Chr03	irgsp1_rep	CDS	35900667	35901119	.	+	1	Parent=Os03t0852600-01
Chr03	irgsp1_rep	mRNA	35901268	35903066	.	-	.	ID=Os03t0852700-01;Name=Os03t0852700-01;Locus_id=Os03g0852700;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK106025 (DDBJ%2C Best hit);ORF_evidence=Q851X3 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-206-C09;Expression=AK106025;TENOR=Os03t0852700-01;KEGG=Os03t0852700-01
Chr03	irgsp1_rep	five_prime_UTR	35903035	35903066	.	-	.	Parent=Os03t0852700-01
Chr03	irgsp1_rep	CDS	35901487	35903034	.	-	0	Parent=Os03t0852700-01
Chr03	irgsp1_rep	three_prime_UTR	35901268	35901486	.	-	.	Parent=Os03t0852700-01
Chr03	irgsp1_rep	mRNA	35900827	35903007	.	-	.	ID=Os03t0852700-02;Name=Os03t0852700-02;Locus_id=Os03g0852700;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK107484 (DDBJ%2C Best hit);ORF_evidence=Q851X3 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-129-C07;Expression=AK107484;TENOR=Os03t0852700-02;KEGG=Os03t0852700-02
Chr03	irgsp1_rep	CDS	35901487	35903007	.	-	0	Parent=Os03t0852700-02
Chr03	irgsp1_rep	three_prime_UTR	35900827	35901486	.	-	.	Parent=Os03t0852700-02
Chr03	irgsp1_rep	mRNA	35907129	35908400	.	+	.	ID=Os03t0852800-00;Name=Os03t0852800-00;Locus_id=Os03g0852800;CGSNL Gene Symbol=NPC4;CGSNL Gene Name=NON-SPECIFIC PHOSPHOLIPASE C4;Oryzabase Gene Symbol Synonym(s)=OsNPC3%2C OsNPC4%2C NPC3;Oryzabase Gene Name Synonym(s)=Non-specific phospholipase C4;Note=Similar to NPC4 (NONSPECIFIC PHOSPHOLIPASE C4)%3B hydrolase%2C acting on ester bonds / phospholipase C.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_566206.1 (RefSeq);GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Phosphoesterase (IPR007312);Oryzabase=21050;TENOR=Os03t0852800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	35907129	35908400	.	+	0	Parent=Os03t0852800-00
Chr03	irgsp1_rep	mRNA	35908721	35911694	.	-	.	ID=Os03t0852900-01;Name=Os03t0852900-01;Locus_id=Os03g0852900;Note=Similar to Cleavage and polyadenylation specificity factor%2C 73 kDa subunit (CPSF 73 kDa subunit).;Transcript_evidence=AK100660 (DDBJ%2C Best hit);ORF_evidence=NP_001151522.1 (RefSeq);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Beta-lactamase-like (IPR001279),RNA-metabolising metallo-beta-lactamase (IPR011108),Pre-mRNA 3&apos%3B-end-processing endonuclease polyadenylation factor C-term (IPR021718),Beta-Casp domain (IPR022712);NIAS_FLcDNA=J023111N01;Expression=AK100660;TENOR=Os03t0852900-01;KEGG=Os03t0852900-01
Chr03	irgsp1_rep	five_prime_UTR	35911681	35911694	.	-	.	Parent=Os03t0852900-01
Chr03	irgsp1_rep	CDS	35911510	35911680	.	-	0	Parent=Os03t0852900-01
Chr03	irgsp1_rep	CDS	35911293	35911390	.	-	0	Parent=Os03t0852900-01
Chr03	irgsp1_rep	CDS	35911142	35911187	.	-	1	Parent=Os03t0852900-01
Chr03	irgsp1_rep	CDS	35910890	35911039	.	-	0	Parent=Os03t0852900-01
Chr03	irgsp1_rep	CDS	35908973	35910610	.	-	0	Parent=Os03t0852900-01
Chr03	irgsp1_rep	three_prime_UTR	35908721	35908972	.	-	.	Parent=Os03t0852900-01
Chr03	irgsp1_rep	mRNA	35922773	35923848	.	+	.	ID=Os03t0853200-01;Name=Os03t0853200-01;Locus_id=Os03g0853200;CGSNL Gene Symbol=TET6;CGSNL Gene Name=TETRASPANIN 6;Oryzabase Gene Symbol Synonym(s)=OsTET6;Oryzabase Gene Name Synonym(s)=tetraspanin 6;Note=Tetraspanin domain containing protein.;Transcript_evidence=AK109128 (DDBJ%2C Best hit);ORF_evidence=B8ANQ8 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Tetraspanin (IPR018499);NIAS_FLcDNA=002-155-D07;Oryzabase=20311;Expression=AK109128;TENOR=Os03t0853200-01;KEGG=Os03t0853200-01
Chr03	irgsp1_rep	five_prime_UTR	35922773	35922823	.	+	.	Parent=Os03t0853200-01
Chr03	irgsp1_rep	CDS	35922824	35923402	.	+	0	Parent=Os03t0853200-01
Chr03	irgsp1_rep	CDS	35923514	35923792	.	+	0	Parent=Os03t0853200-01
Chr03	irgsp1_rep	three_prime_UTR	35923793	35923848	.	+	.	Parent=Os03t0853200-01
Chr03	irgsp1_rep	mRNA	35952419	35954852	.	-	.	ID=Os03t0853350-00;Name=Os03t0853350-00;Locus_id=Os03g0853350;Note=Hypothetical gene.;Transcript_evidence=CT837936 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os03t0853350-00;KEGG=Os03t0853350-00
Chr03	irgsp1_rep	five_prime_UTR	35954852	35954852	.	-	.	Parent=Os03t0853350-00
Chr03	irgsp1_rep	CDS	35954498	35954851	.	-	0	Parent=Os03t0853350-00
Chr03	irgsp1_rep	three_prime_UTR	35953361	35954497	.	-	.	Parent=Os03t0853350-00
Chr03	irgsp1_rep	three_prime_UTR	35952980	35953166	.	-	.	Parent=Os03t0853350-00
Chr03	irgsp1_rep	three_prime_UTR	35952419	35952748	.	-	.	Parent=Os03t0853350-00
Chr03	irgsp1_rep	mRNA	35953560	35955166	.	+	.	ID=Os03t0853500-00;Name=Os03t0853500-00;Locus_id=Os03g0853500;CGSNL Gene Symbol=BRXL4;CGSNL Gene Name=BREVIS RADIX-LIKE 4;Oryzabase Gene Symbol Synonym(s)=OsBRXL4;Oryzabase Gene Name Synonym(s)=Brevis radix-like 4%2C BRX-like 4;Note=Similar to Protein Brevis radix-like 4.;Transcript_evidence=AK375741 (DDBJ);ORF_evidence=Q84T65 (UniProt);InterPro=Brevis radix-like domain (IPR013591);Oryzabase=8930;TENOR=Os03t0853500-00;KEGG=Os03t0853500-00
Chr03	irgsp1_rep	CDS	35953560	35954090	.	+	0	Parent=Os03t0853500-00
Chr03	irgsp1_rep	CDS	35954507	35954937	.	+	0	Parent=Os03t0853500-00
Chr03	irgsp1_rep	CDS	35955088	35955166	.	+	1	Parent=Os03t0853500-00
Chr03	irgsp1_rep	mRNA	35955549	35960595	.	-	.	ID=Os03t0853600-01;Name=Os03t0853600-01;Locus_id=Os03g0853600;Note=Conserved hypothetical protein.;Transcript_evidence=AK289173 (DDBJ%2C Best hit);ORF_evidence=Q84T58 (UniProt);NIAS_FLcDNA=J100017O11;TENOR=Os03t0853600-01;KEGG=Os03t0853600-01
Chr03	irgsp1_rep	five_prime_UTR	35960543	35960595	.	-	.	Parent=Os03t0853600-01
Chr03	irgsp1_rep	CDS	35959766	35960542	.	-	0	Parent=Os03t0853600-01
Chr03	irgsp1_rep	CDS	35957312	35957367	.	-	0	Parent=Os03t0853600-01
Chr03	irgsp1_rep	CDS	35957021	35957213	.	-	1	Parent=Os03t0853600-01
Chr03	irgsp1_rep	CDS	35956195	35956551	.	-	0	Parent=Os03t0853600-01
Chr03	irgsp1_rep	three_prime_UTR	35955549	35956194	.	-	.	Parent=Os03t0853600-01
Chr03	irgsp1_rep	mRNA	35965090	35968402	.	-	.	ID=Os03t0853700-01;Name=Os03t0853700-01;Locus_id=Os03g0853700;Note=GC-rich sequence DNA-binding factor-like family protein.;Transcript_evidence=AK069032 (DDBJ%2C Best hit);ORF_evidence=A2XP71 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=GC-rich sequence DNA-binding factor (IPR012890),GC-rich sequence DNA-binding factor domain (IPR022783);NIAS_FLcDNA=J023004O11;Expression=AK069032;TENOR=Os03t0853700-01;KEGG=Os03t0853700-01
Chr03	irgsp1_rep	five_prime_UTR	35968318	35968402	.	-	.	Parent=Os03t0853700-01
Chr03	irgsp1_rep	five_prime_UTR	35968173	35968218	.	-	.	Parent=Os03t0853700-01
Chr03	irgsp1_rep	CDS	35965305	35968172	.	-	0	Parent=Os03t0853700-01
Chr03	irgsp1_rep	three_prime_UTR	35965090	35965304	.	-	.	Parent=Os03t0853700-01
Chr03	irgsp1_rep	mRNA	35968541	35970513	.	+	.	ID=Os03t0853800-01;Name=Os03t0853800-01;Locus_id=Os03g0853800;Note=Protein of unknown function DUF1301 family protein.;Transcript_evidence=AK120043 (DDBJ%2C Best hit);ORF_evidence=Q84T82 (UniProt);InterPro=Protein of unknown function DUF1301%2C TMEM70 (IPR009724);NIAS_FLcDNA=002-188-F05;Expression=AK120043;TENOR=Os03t0853800-01;KEGG=Os03t0853800-01
Chr03	irgsp1_rep	five_prime_UTR	35968541	35968573	.	+	.	Parent=Os03t0853800-01
Chr03	irgsp1_rep	CDS	35968574	35968679	.	+	0	Parent=Os03t0853800-01
Chr03	irgsp1_rep	CDS	35969460	35969521	.	+	2	Parent=Os03t0853800-01
Chr03	irgsp1_rep	CDS	35969636	35970136	.	+	0	Parent=Os03t0853800-01
Chr03	irgsp1_rep	three_prime_UTR	35970137	35970513	.	+	.	Parent=Os03t0853800-01
Chr03	irgsp1_rep	mRNA	35968541	35970470	.	+	.	ID=Os03t0853800-02;Name=Os03t0853800-02;Locus_id=Os03g0853800;Note=Similar to predicted protein.;Transcript_evidence=AK102872 (DDBJ%2C Best hit),AK059849 (DDBJ%2C Best hit);ORF_evidence=A2XP72 (UniProt);InterPro=Protein of unknown function DUF1301%2C TMEM70 (IPR009724);NIAS_FLcDNA=J033112B07,006-206-F12;TENOR=Os03t0853800-02
Chr03	irgsp1_rep	five_prime_UTR	35968541	35968573	.	+	.	Parent=Os03t0853800-02
Chr03	irgsp1_rep	CDS	35968574	35968679	.	+	0	Parent=Os03t0853800-02
Chr03	irgsp1_rep	CDS	35969460	35970136	.	+	2	Parent=Os03t0853800-02
Chr03	irgsp1_rep	three_prime_UTR	35970137	35970470	.	+	.	Parent=Os03t0853800-02
Chr03	irgsp1_rep	mRNA	35969929	35970289	.	+	.	ID=Os03t0853800-03;Name=Os03t0853800-03;Locus_id=Os03g0853800;Note=Similar to predicted protein.;Transcript_evidence=AK058371 (DDBJ%2C Best hit);ORF_evidence=Q84T82 (UniProt);NIAS_FLcDNA=001-014-G06;Expression=AK058371;TENOR=Os03t0853800-03;KEGG=Os03t0853800-03
Chr03	irgsp1_rep	five_prime_UTR	35969929	35969929	.	+	.	Parent=Os03t0853800-03
Chr03	irgsp1_rep	CDS	35969930	35970136	.	+	0	Parent=Os03t0853800-03
Chr03	irgsp1_rep	three_prime_UTR	35970137	35970289	.	+	.	Parent=Os03t0853800-03
Chr03	irgsp1_rep	mRNA	35970792	35973334	.	-	.	ID=Os03t0853900-01;Name=Os03t0853900-01;Locus_id=Os03g0853900;Note=Similar to p21Cip1-binding protein-related.;Transcript_evidence=AK064339 (DDBJ%2C Best hit),AK103879 (DDBJ%2C Best hit);ORF_evidence=NP_566018.1 (RefSeq);NIAS_FLcDNA=002-107-H02,J033149N19;TENOR=Os03t0853900-01
Chr03	irgsp1_rep	five_prime_UTR	35973287	35973334	.	-	.	Parent=Os03t0853900-01
Chr03	irgsp1_rep	CDS	35973145	35973286	.	-	0	Parent=Os03t0853900-01
Chr03	irgsp1_rep	CDS	35972927	35973066	.	-	2	Parent=Os03t0853900-01
Chr03	irgsp1_rep	CDS	35972565	35972837	.	-	0	Parent=Os03t0853900-01
Chr03	irgsp1_rep	CDS	35972259	35972468	.	-	0	Parent=Os03t0853900-01
Chr03	irgsp1_rep	CDS	35972086	35972151	.	-	0	Parent=Os03t0853900-01
Chr03	irgsp1_rep	CDS	35971798	35971890	.	-	0	Parent=Os03t0853900-01
Chr03	irgsp1_rep	CDS	35971652	35971708	.	-	0	Parent=Os03t0853900-01
Chr03	irgsp1_rep	CDS	35971043	35971138	.	-	0	Parent=Os03t0853900-01
Chr03	irgsp1_rep	three_prime_UTR	35970792	35971042	.	-	.	Parent=Os03t0853900-01
Chr03	irgsp1_rep	mRNA	35973553	35974425	.	+	.	ID=Os03t0854000-01;Name=Os03t0854000-01;Locus_id=Os03g0854000;Note=Butirosin biosynthesis%2C BtrG-like domain containing protein.;Transcript_evidence=AK061374 (DDBJ%2C Best hit);ORF_evidence=A2XP74 (UniProt);InterPro=AIG2-like (IPR009288),Butirosin biosynthesis%2C BtrG-like (IPR013024);NIAS_FLcDNA=006-304-F09;Expression=AK061374;TENOR=Os03t0854000-01;KEGG=Os03t0854000-01
Chr03	irgsp1_rep	five_prime_UTR	35973553	35973606	.	+	.	Parent=Os03t0854000-01
Chr03	irgsp1_rep	CDS	35973607	35974173	.	+	0	Parent=Os03t0854000-01
Chr03	irgsp1_rep	three_prime_UTR	35974174	35974425	.	+	.	Parent=Os03t0854000-01
Chr03	irgsp1_rep	mRNA	35975476	35978914	.	-	.	ID=Os03t0854100-01;Name=Os03t0854100-01;Locus_id=Os03g0854100;Oryzabase Gene Name Synonym(s)=GTPase-activating protein;Note=Similar to ARF GAP-like zinc finger-containing protein ZIGA2 (Fragment).;Transcript_evidence=AK067615 (DDBJ%2C Best hit);ORF_evidence=NP_001149824.1 (RefSeq);GO=Biological Process: regulation of ARF GTPase activity (GO:0032312),Molecular Function: ARF GTPase activator activity (GO:0008060),Molecular Function: zinc ion binding (GO:0008270);InterPro=Arf GTPase activating protein (IPR001164);NIAS_FLcDNA=J013107N20;Oryzabase=18470;Expression=AK067615;TENOR=Os03t0854100-01;KEGG=Os03t0854100-01
Chr03	irgsp1_rep	five_prime_UTR	35978735	35978914	.	-	.	Parent=Os03t0854100-01
Chr03	irgsp1_rep	CDS	35978666	35978734	.	-	0	Parent=Os03t0854100-01
Chr03	irgsp1_rep	CDS	35978452	35978570	.	-	0	Parent=Os03t0854100-01
Chr03	irgsp1_rep	CDS	35977264	35977720	.	-	1	Parent=Os03t0854100-01
Chr03	irgsp1_rep	CDS	35976871	35977131	.	-	0	Parent=Os03t0854100-01
Chr03	irgsp1_rep	CDS	35976358	35976480	.	-	0	Parent=Os03t0854100-01
Chr03	irgsp1_rep	CDS	35976047	35976151	.	-	0	Parent=Os03t0854100-01
Chr03	irgsp1_rep	CDS	35975774	35975878	.	-	0	Parent=Os03t0854100-01
Chr03	irgsp1_rep	three_prime_UTR	35975476	35975773	.	-	.	Parent=Os03t0854100-01
Chr03	irgsp1_rep	mRNA	35975545	35976900	.	-	.	ID=Os03t0854100-02;Name=Os03t0854100-02;Locus_id=Os03g0854100;Oryzabase Gene Name Synonym(s)=GTPase-activating protein;Note=Similar to predicted protein.;Transcript_evidence=AK104897 (DDBJ%2C Best hit);ORF_evidence=NP_001149824.1 (RefSeq);NIAS_FLcDNA=001-046-B12;Oryzabase=18470;Expression=AK104897;TENOR=Os03t0854100-02;KEGG=Os03t0854100-02
Chr03	irgsp1_rep	CDS	35976871	35976900	.	-	0	Parent=Os03t0854100-02
Chr03	irgsp1_rep	CDS	35976358	35976480	.	-	0	Parent=Os03t0854100-02
Chr03	irgsp1_rep	CDS	35976047	35976151	.	-	0	Parent=Os03t0854100-02
Chr03	irgsp1_rep	CDS	35975774	35975878	.	-	0	Parent=Os03t0854100-02
Chr03	irgsp1_rep	three_prime_UTR	35975545	35975773	.	-	.	Parent=Os03t0854100-02
Chr03	irgsp1_rep	mRNA	35979829	35982390	.	-	.	ID=Os03t0854200-01;Name=Os03t0854200-01;Locus_id=Os03g0854200;Note=Exoribonuclease domain containing protein.;Transcript_evidence=AK069107 (DDBJ%2C Best hit);ORF_evidence=Q84T68 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Molecular Function: RNA binding (GO:0003723);InterPro=Exoribonuclease%2C phosphorolytic domain 1 (IPR001247),Exoribonuclease%2C phosphorolytic domain 2 (IPR015847),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=J023009H04;Expression=AK069107;TENOR=Os03t0854200-01;KEGG=Os03t0854200-01
Chr03	irgsp1_rep	five_prime_UTR	35982327	35982390	.	-	.	Parent=Os03t0854200-01
Chr03	irgsp1_rep	CDS	35982107	35982326	.	-	0	Parent=Os03t0854200-01
Chr03	irgsp1_rep	CDS	35981912	35982012	.	-	2	Parent=Os03t0854200-01
Chr03	irgsp1_rep	CDS	35981556	35981576	.	-	0	Parent=Os03t0854200-01
Chr03	irgsp1_rep	CDS	35980994	35981066	.	-	0	Parent=Os03t0854200-01
Chr03	irgsp1_rep	CDS	35980864	35980931	.	-	2	Parent=Os03t0854200-01
Chr03	irgsp1_rep	CDS	35980407	35980536	.	-	0	Parent=Os03t0854200-01
Chr03	irgsp1_rep	CDS	35980195	35980298	.	-	2	Parent=Os03t0854200-01
Chr03	irgsp1_rep	three_prime_UTR	35979829	35980194	.	-	.	Parent=Os03t0854200-01
Chr03	irgsp1_rep	mRNA	35981879	35982485	.	+	.	ID=Os03t0854250-00;Name=Os03t0854250-00;Locus_id=Os03g0854250;Note=Conserved hypothetical protein.;Transcript_evidence=EU947977 (DDBJ);ORF_evidence=C0PGS9 (UniProt);TENOR=Os03t0854250-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	35981879	35982029	.	+	.	Parent=Os03t0854250-00
Chr03	irgsp1_rep	CDS	35982030	35982485	.	+	0	Parent=Os03t0854250-00
Chr03	irgsp1_rep	mRNA	35982554	35985772	.	+	.	ID=Os03t0854300-01;Name=Os03t0854300-01;Locus_id=Os03g0854300;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK073369 (DDBJ%2C Best hit);ORF_evidence=XP_002865157.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033025P17;Expression=AK073369;TENOR=Os03t0854300-01;KEGG=Os03t0854300-01
Chr03	irgsp1_rep	five_prime_UTR	35982554	35982644	.	+	.	Parent=Os03t0854300-01
Chr03	irgsp1_rep	CDS	35982645	35983139	.	+	0	Parent=Os03t0854300-01
Chr03	irgsp1_rep	CDS	35983219	35983277	.	+	0	Parent=Os03t0854300-01
Chr03	irgsp1_rep	CDS	35984255	35984324	.	+	1	Parent=Os03t0854300-01
Chr03	irgsp1_rep	CDS	35984441	35984563	.	+	0	Parent=Os03t0854300-01
Chr03	irgsp1_rep	CDS	35984651	35984779	.	+	0	Parent=Os03t0854300-01
Chr03	irgsp1_rep	CDS	35985083	35985532	.	+	0	Parent=Os03t0854300-01
Chr03	irgsp1_rep	three_prime_UTR	35985533	35985772	.	+	.	Parent=Os03t0854300-01
Chr03	irgsp1_rep	mRNA	35985171	35985772	.	+	.	ID=Os03t0854300-02;Name=Os03t0854300-02;Locus_id=Os03g0854300;Note=Hypothetical conserved gene.;Transcript_evidence=AK063818 (DDBJ%2C Best hit);ORF_evidence=A2XP77 (UniProt);NIAS_FLcDNA=001-121-H10;Expression=AK063818;TENOR=Os03t0854300-02;KEGG=Os03t0854300-02
Chr03	irgsp1_rep	five_prime_UTR	35985171	35985172	.	+	.	Parent=Os03t0854300-02
Chr03	irgsp1_rep	CDS	35985173	35985532	.	+	0	Parent=Os03t0854300-02
Chr03	irgsp1_rep	three_prime_UTR	35985533	35985772	.	+	.	Parent=Os03t0854300-02
Chr03	irgsp1_rep	mRNA	35986017	35986872	.	-	.	ID=Os03t0854400-01;Name=Os03t0854400-01;Locus_id=Os03g0854400;Note=Ribonuclease III domain containing protein.;Transcript_evidence=AK287762 (DDBJ%2C Best hit);ORF_evidence=NP_001146877.1 (RefSeq);GO=Biological Process: RNA processing (GO:0006396),Molecular Function: RNA binding (GO:0003723),Molecular Function: ribonuclease III activity (GO:0004525);InterPro=Ribonuclease III (IPR000999);NIAS_FLcDNA=J065162L23;TENOR=Os03t0854400-01;KEGG=Os03t0854400-01
Chr03	irgsp1_rep	five_prime_UTR	35986817	35986872	.	-	.	Parent=Os03t0854400-01
Chr03	irgsp1_rep	CDS	35986280	35986816	.	-	0	Parent=Os03t0854400-01
Chr03	irgsp1_rep	three_prime_UTR	35986017	35986279	.	-	.	Parent=Os03t0854400-01
Chr03	irgsp1_rep	mRNA	35989130	35992565	.	+	.	ID=Os03t0854500-01;Name=Os03t0854500-01;Locus_id=Os03g0854500;CGSNL Gene Symbol=HSFA1;CGSNL Gene Name=HEAT STRESS TRANSCRIPTION FACTOR A1;Oryzabase Gene Symbol Synonym(s)=OsHsfA1%2C HSFA1%2C OsHSF13%2C HSF13%2C OsHsf-13%2C HSF3%2C rHsf3%2C OsHsfA1a;Oryzabase Gene Name Synonym(s)=Heat stress transcription factor A1%2C Heat stress transcription factor A-1%2C Heat stress transcription factor 13%2C Heat stress transcription factor 3;Note=Similar to Heat shock transcription factor 31 (Fragment).;Transcript_evidence=AK100430 (DDBJ%2C Best hit);ORF_evidence=Q84T61 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Heat shock factor (HSF)-type%2C DNA-binding (IPR000232),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=J023088F14;Oryzabase=8547;Expression=AK100430;TENOR=Os03t0854500-01;KEGG=Os03t0854500-01
Chr03	irgsp1_rep	five_prime_UTR	35989130	35989253	.	+	.	Parent=Os03t0854500-01
Chr03	irgsp1_rep	CDS	35989254	35989541	.	+	0	Parent=Os03t0854500-01
Chr03	irgsp1_rep	CDS	35990928	35992160	.	+	0	Parent=Os03t0854500-01
Chr03	irgsp1_rep	three_prime_UTR	35992161	35992565	.	+	.	Parent=Os03t0854500-01
Chr03	irgsp1_rep	mRNA	35989220	35992240	.	+	.	ID=Os03t0854500-02;Name=Os03t0854500-02;Locus_id=Os03g0854500;CGSNL Gene Symbol=HSFA1;CGSNL Gene Name=HEAT STRESS TRANSCRIPTION FACTOR A1;Oryzabase Gene Symbol Synonym(s)=OsHsfA1%2C HSFA1%2C OsHSF13%2C HSF13%2C OsHsf-13%2C HSF3%2C rHsf3%2C OsHsfA1a;Oryzabase Gene Name Synonym(s)=Heat stress transcription factor A1%2C Heat stress transcription factor A-1%2C Heat stress transcription factor 13%2C Heat stress transcription factor 3;Note=Similar to Heat shock transcription factor 31 (Fragment).;Transcript_evidence=AK106118 (DDBJ%2C Best hit);ORF_evidence=Q84T61 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Heat shock factor (HSF)-type%2C DNA-binding (IPR000232),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=001-207-E07;Oryzabase=8547;Expression=AK106118;TENOR=Os03t0854500-02;KEGG=Os03t0854500-02
Chr03	irgsp1_rep	five_prime_UTR	35989220	35989253	.	+	.	Parent=Os03t0854500-02
Chr03	irgsp1_rep	CDS	35989254	35989541	.	+	0	Parent=Os03t0854500-02
Chr03	irgsp1_rep	CDS	35990928	35992160	.	+	0	Parent=Os03t0854500-02
Chr03	irgsp1_rep	three_prime_UTR	35992161	35992240	.	+	.	Parent=Os03t0854500-02
Chr03	irgsp1_rep	mRNA	35994466	35995919	.	-	.	ID=Os03t0854600-01;Name=Os03t0854600-01;Locus_id=Os03g0854600;CGSNL Gene Symbol=XTH24;CGSNL Gene Name=XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 24;Oryzabase Gene Symbol Synonym(s)=OsXTH24;Oryzabase Gene Name Synonym(s)=xyloglucan endotransglucosylase/hydrolase%2C xyloglucan endotransglucosylase 24;Note=Concanavalin A-like lectin/glucanase domain containing protein.;Transcript_evidence=AK071886 (DDBJ%2C Best hit);ORF_evidence=C0IRH3 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: cellular glucan metabolic process (GO:0006073),Cellular Component: cell wall (GO:0005618),Cellular Component: apoplast (GO:0048046),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762);InterPro=Glycoside hydrolase%2C family 16 (IPR000757),Concanavalin A-like lectin/glucanase (IPR008985),Xyloglucan endo-transglycosylase%2C C-terminal (IPR010713),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320);NIAS_FLcDNA=J013047H18;Oryzabase=6505;Expression=AK071886;TENOR=Os03t0854600-01;KEGG=Os03t0854600-01 (EC:2.4.1.207)
Chr03	irgsp1_rep	five_prime_UTR	35995786	35995919	.	-	.	Parent=Os03t0854600-01
Chr03	irgsp1_rep	CDS	35995486	35995785	.	-	0	Parent=Os03t0854600-01
Chr03	irgsp1_rep	CDS	35994605	35995390	.	-	0	Parent=Os03t0854600-01
Chr03	irgsp1_rep	three_prime_UTR	35994466	35994604	.	-	.	Parent=Os03t0854600-01
Chr03	irgsp1_rep	mRNA	35994445	35995865	.	-	.	ID=Os03t0854600-02;Name=Os03t0854600-02;Locus_id=Os03g0854600;CGSNL Gene Symbol=XTH24;CGSNL Gene Name=XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 24;Oryzabase Gene Symbol Synonym(s)=OsXTH24;Oryzabase Gene Name Synonym(s)=xyloglucan endotransglucosylase/hydrolase%2C xyloglucan endotransglucosylase 24;Note=Concanavalin A-like lectin/glucanase domain containing protein.;Transcript_evidence=AK104577 (DDBJ%2C Best hit);ORF_evidence=C0IRH3 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: cellular glucan metabolic process (GO:0006073),Cellular Component: cell wall (GO:0005618),Cellular Component: apoplast (GO:0048046),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762);InterPro=Glycoside hydrolase%2C family 16 (IPR000757),Concanavalin A-like lectin/glucanase (IPR008985),Xyloglucan endo-transglycosylase%2C C-terminal (IPR010713),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320);NIAS_FLcDNA=006-307-A12;Oryzabase=6505;TENOR=Os03t0854600-02
Chr03	irgsp1_rep	five_prime_UTR	35995786	35995865	.	-	.	Parent=Os03t0854600-02
Chr03	irgsp1_rep	CDS	35995486	35995785	.	-	0	Parent=Os03t0854600-02
Chr03	irgsp1_rep	CDS	35994605	35995390	.	-	0	Parent=Os03t0854600-02
Chr03	irgsp1_rep	three_prime_UTR	35994445	35994604	.	-	.	Parent=Os03t0854600-02
Chr03	irgsp1_rep	mRNA	36001958	36007478	.	-	.	ID=Os03t0854800-01;Name=Os03t0854800-01;Locus_id=Os03g0854800;Note=Similar to Poly polymerase catalytic domain containing protein%2C expressed.;Transcript_evidence=AK060748 (DDBJ%2C Best hit);ORF_evidence=Q84T80 (UniProt);NIAS_FLcDNA=001-032-F11;TENOR=Os03t0854800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	36007212	36007478	.	-	.	Parent=Os03t0854800-01
Chr03	irgsp1_rep	five_prime_UTR	36006859	36006950	.	-	.	Parent=Os03t0854800-01
Chr03	irgsp1_rep	five_prime_UTR	36005333	36005502	.	-	.	Parent=Os03t0854800-01
Chr03	irgsp1_rep	CDS	36004735	36005332	.	-	0	Parent=Os03t0854800-01
Chr03	irgsp1_rep	CDS	36004612	36004655	.	-	2	Parent=Os03t0854800-01
Chr03	irgsp1_rep	three_prime_UTR	36004233	36004611	.	-	.	Parent=Os03t0854800-01
Chr03	irgsp1_rep	three_prime_UTR	36003878	36004119	.	-	.	Parent=Os03t0854800-01
Chr03	irgsp1_rep	three_prime_UTR	36003713	36003774	.	-	.	Parent=Os03t0854800-01
Chr03	irgsp1_rep	three_prime_UTR	36002778	36002963	.	-	.	Parent=Os03t0854800-01
Chr03	irgsp1_rep	three_prime_UTR	36002591	36002686	.	-	.	Parent=Os03t0854800-01
Chr03	irgsp1_rep	three_prime_UTR	36001958	36002300	.	-	.	Parent=Os03t0854800-01
Chr03	irgsp1_rep	mRNA	36005344	36007469	.	-	.	ID=Os03t0854800-02;Name=Os03t0854800-02;Locus_id=Os03g0854800;Note=Hypothetical conserved gene.;Transcript_evidence=AK062754 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-106-G06;Expression=AK062754;TENOR=Os03t0854800-02;KEGG=Os03t0854800-02
Chr03	irgsp1_rep	five_prime_UTR	36007468	36007469	.	-	.	Parent=Os03t0854800-02
Chr03	irgsp1_rep	CDS	36007225	36007467	.	-	0	Parent=Os03t0854800-02
Chr03	irgsp1_rep	three_prime_UTR	36007212	36007224	.	-	.	Parent=Os03t0854800-02
Chr03	irgsp1_rep	three_prime_UTR	36005344	36005502	.	-	.	Parent=Os03t0854800-02
Chr03	irgsp1_rep	mRNA	36001958	36007215	.	-	.	ID=Os03t0854800-03;Name=Os03t0854800-03;Locus_id=Os03g0854800;Note=Similar to Poly polymerase catalytic domain containing protein%2C expressed.;Transcript_evidence=AK072499 (DDBJ%2C Best hit);ORF_evidence=Q84T80 (UniProt);GO=Molecular Function: NAD+ ADP-ribosyltransferase activity (GO:0003950);InterPro=Poly(ADP-ribose) polymerase%2C catalytic domain (IPR012317),RST domain of plant C-terminal (IPR022003);NIAS_FLcDNA=J023125E22;Expression=AK072499;TENOR=Os03t0854800-03;KEGG=Os03t0854800-03
Chr03	irgsp1_rep	five_prime_UTR	36005333	36007215	.	-	.	Parent=Os03t0854800-03
Chr03	irgsp1_rep	CDS	36004233	36005332	.	-	0	Parent=Os03t0854800-03
Chr03	irgsp1_rep	CDS	36003878	36004119	.	-	1	Parent=Os03t0854800-03
Chr03	irgsp1_rep	CDS	36003713	36003774	.	-	2	Parent=Os03t0854800-03
Chr03	irgsp1_rep	CDS	36002778	36002963	.	-	0	Parent=Os03t0854800-03
Chr03	irgsp1_rep	CDS	36002591	36002686	.	-	0	Parent=Os03t0854800-03
Chr03	irgsp1_rep	CDS	36002232	36002300	.	-	0	Parent=Os03t0854800-03
Chr03	irgsp1_rep	three_prime_UTR	36001958	36002231	.	-	.	Parent=Os03t0854800-03
Chr03	irgsp1_rep	mRNA	36039164	36043821	.	+	.	ID=Os03t0855100-01;Name=Os03t0855100-01;Locus_id=Os03g0855100;RAP-DB Gene Symbol Synonym(s)=OsWRKY80;RAP-DB Gene Name Synonym(s)=WRKY80 gene;CGSNL Gene Symbol=WRKY80;CGSNL Gene Name=WRKY GENE 80;Oryzabase Gene Symbol Synonym(s)=OsWRKY80;Note=WRKY transcription factor%2C Defense response to sheath blight pathogen;Transcript_evidence=AK109795;ORF_evidence=Q84T64;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA-binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=WRKY domain superfamily (IPR036576),WRKY domain (IPR003657);NIAS_FLcDNA=002-147-E06;Manual Curation=October 6%2C 2020;Literature_PMID=27888467,Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=9212;Expression=AK109795;TENOR=Os03t0855100-01;KEGG=Os03t0855100-01;Subcellular location=nucleus (GO:0005634)
Chr03	irgsp1_rep	five_prime_UTR	36039164	36039355	.	+	.	Parent=Os03t0855100-01
Chr03	irgsp1_rep	CDS	36039356	36039867	.	+	0	Parent=Os03t0855100-01
Chr03	irgsp1_rep	CDS	36040543	36040686	.	+	1	Parent=Os03t0855100-01
Chr03	irgsp1_rep	CDS	36043047	36043554	.	+	1	Parent=Os03t0855100-01
Chr03	irgsp1_rep	three_prime_UTR	36043555	36043821	.	+	.	Parent=Os03t0855100-01
Chr03	irgsp1_rep	mRNA	36073172	36074304	.	+	.	ID=Os03t0855500-00;Name=Os03t0855500-00;Locus_id=Os03g0855500;Oryzabase Gene Symbol Synonym(s)=OsFbox177%2C Os_F0120;Oryzabase Gene Name Synonym(s)=F-box protein 177;Note=Similar to F-box domain containing protein%2C expressed.;Transcript_evidence=tplb0003p01 (Wheat FLcDNA);ORF_evidence=D8L9M5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Protein of unknown function DUF295 (IPR005174),F-box domain%2C Skp2-like (IPR022364);Oryzabase=16966;TENOR=Os03t0855500-00;KEGG=Os03t0855500-00
Chr03	irgsp1_rep	CDS	36073172	36074290	.	+	0	Parent=Os03t0855500-00
Chr03	irgsp1_rep	three_prime_UTR	36074291	36074304	.	+	.	Parent=Os03t0855500-00
Chr03	irgsp1_rep	mRNA	36074928	36079510	.	+	.	ID=Os03t0855600-01;Name=Os03t0855600-01;Locus_id=Os03g0855600;Note=Similar to DANA2.;Transcript_evidence=AK067858 (DDBJ%2C Best hit);ORF_evidence=Q5IBC6 (UniProt);NIAS_FLcDNA=J013123A10;Expression=AK067858;TENOR=Os03t0855600-01;KEGG=Os03t0855600-01
Chr03	irgsp1_rep	five_prime_UTR	36074928	36075022	.	+	.	Parent=Os03t0855600-01
Chr03	irgsp1_rep	CDS	36075023	36075226	.	+	0	Parent=Os03t0855600-01
Chr03	irgsp1_rep	CDS	36075323	36075712	.	+	0	Parent=Os03t0855600-01
Chr03	irgsp1_rep	CDS	36079205	36079285	.	+	0	Parent=Os03t0855600-01
Chr03	irgsp1_rep	three_prime_UTR	36079286	36079510	.	+	.	Parent=Os03t0855600-01
Chr03	irgsp1_rep	mRNA	36074953	36079713	.	+	.	ID=Os03t0855600-02;Name=Os03t0855600-02;Locus_id=Os03g0855600;Note=Similar to DANA2.;Transcript_evidence=AK061467 (DDBJ%2C Best hit),AK060030 (DDBJ%2C Best hit),AK106030 (DDBJ%2C Best hit);ORF_evidence=Q5IBC6 (UniProt);NIAS_FLcDNA=006-308-C12,006-303-G09,001-206-D02;Expression=AK061467;TENOR=Os03t0855600-02;KEGG=Os03t0855600-02
Chr03	irgsp1_rep	five_prime_UTR	36074953	36075022	.	+	.	Parent=Os03t0855600-02
Chr03	irgsp1_rep	CDS	36075023	36075226	.	+	0	Parent=Os03t0855600-02
Chr03	irgsp1_rep	CDS	36075323	36075712	.	+	0	Parent=Os03t0855600-02
Chr03	irgsp1_rep	CDS	36079205	36079285	.	+	0	Parent=Os03t0855600-02
Chr03	irgsp1_rep	three_prime_UTR	36079286	36079713	.	+	.	Parent=Os03t0855600-02
Chr03	irgsp1_rep	mRNA	36082364	36096474	.	+	.	ID=Os03t0855700-01;Name=Os03t0855700-01;Locus_id=Os03g0855700;Note=Nucleic acid-binding%2C OB-fold domain containing protein.;Transcript_evidence=AK070400 (DDBJ%2C Best hit);ORF_evidence=Q10AD7 (UniProt);InterPro=Domain of unknown function DUF223 (IPR003871),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=J023048M06;Oryzabase=19997;Expression=AK070400;TENOR=Os03t0855700-01;KEGG=Os03t0855700-01
Chr03	irgsp1_rep	five_prime_UTR	36082364	36082473	.	+	.	Parent=Os03t0855700-01
Chr03	irgsp1_rep	CDS	36082474	36082553	.	+	0	Parent=Os03t0855700-01
Chr03	irgsp1_rep	CDS	36082779	36082860	.	+	1	Parent=Os03t0855700-01
Chr03	irgsp1_rep	CDS	36093253	36093393	.	+	0	Parent=Os03t0855700-01
Chr03	irgsp1_rep	CDS	36093472	36093748	.	+	0	Parent=Os03t0855700-01
Chr03	irgsp1_rep	CDS	36093863	36093959	.	+	2	Parent=Os03t0855700-01
Chr03	irgsp1_rep	CDS	36094222	36094349	.	+	1	Parent=Os03t0855700-01
Chr03	irgsp1_rep	CDS	36094444	36094525	.	+	2	Parent=Os03t0855700-01
Chr03	irgsp1_rep	CDS	36094669	36094780	.	+	1	Parent=Os03t0855700-01
Chr03	irgsp1_rep	CDS	36094878	36095029	.	+	0	Parent=Os03t0855700-01
Chr03	irgsp1_rep	CDS	36095149	36095584	.	+	1	Parent=Os03t0855700-01
Chr03	irgsp1_rep	CDS	36095674	36095724	.	+	0	Parent=Os03t0855700-01
Chr03	irgsp1_rep	CDS	36095805	36095878	.	+	0	Parent=Os03t0855700-01
Chr03	irgsp1_rep	CDS	36095959	36096044	.	+	1	Parent=Os03t0855700-01
Chr03	irgsp1_rep	CDS	36096135	36096136	.	+	2	Parent=Os03t0855700-01
Chr03	irgsp1_rep	three_prime_UTR	36096137	36096474	.	+	.	Parent=Os03t0855700-01
Chr03	irgsp1_rep	mRNA	36094720	36096479	.	+	.	ID=Os03t0855700-02;Name=Os03t0855700-02;Locus_id=Os03g0855700;Note=Hypothetical conserved gene.;Transcript_evidence=AK059722 (DDBJ%2C Best hit);ORF_evidence=Q75IQ2 (UniProt);InterPro=Nucleic acid-binding%2C OB-fold (IPR012340),Replication factor A%2C C-terminal (IPR013955),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=001-032-H09;Oryzabase=19997;Expression=AK059722;TENOR=Os03t0855700-02;KEGG=Os03t0855700-02
Chr03	irgsp1_rep	five_prime_UTR	36094720	36094720	.	+	.	Parent=Os03t0855700-02
Chr03	irgsp1_rep	CDS	36094721	36094780	.	+	0	Parent=Os03t0855700-02
Chr03	irgsp1_rep	CDS	36094878	36095029	.	+	0	Parent=Os03t0855700-02
Chr03	irgsp1_rep	CDS	36095149	36095584	.	+	1	Parent=Os03t0855700-02
Chr03	irgsp1_rep	CDS	36095674	36095796	.	+	0	Parent=Os03t0855700-02
Chr03	irgsp1_rep	three_prime_UTR	36095797	36096044	.	+	.	Parent=Os03t0855700-02
Chr03	irgsp1_rep	three_prime_UTR	36096135	36096479	.	+	.	Parent=Os03t0855700-02
Chr03	irgsp1_rep	mRNA	36103513	36105063	.	+	.	ID=Os03t0856000-01;Name=Os03t0856000-01;Locus_id=Os03g0856000;CGSNL Gene Symbol=2ODD26;CGSNL Gene Name=2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 26;Oryzabase Gene Symbol Synonym(s)=2-ODD26%2C Os2-ODD26%2C Os2ODD26;Oryzabase Gene Name Synonym(s)=2-oxoglutarate-dependent dioxygenase 26;Note=2OG-Fe(II) oxygenase domain containing protein.;Transcript_evidence=AK071626 (DDBJ%2C Best hit);ORF_evidence=A2XP88 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=J023105N19;Oryzabase=22627;Expression=AK071626;TENOR=Os03t0856000-01;KEGG=Os03t0856000-01
Chr03	irgsp1_rep	five_prime_UTR	36103513	36103651	.	+	.	Parent=Os03t0856000-01
Chr03	irgsp1_rep	CDS	36103652	36104740	.	+	0	Parent=Os03t0856000-01
Chr03	irgsp1_rep	three_prime_UTR	36104741	36105063	.	+	.	Parent=Os03t0856000-01
Chr03	irgsp1_rep	mRNA	36107251	36109822	.	+	.	ID=Os03t0856100-01;Name=Os03t0856100-01;Locus_id=Os03g0856100;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK067137 (DDBJ%2C Best hit);ORF_evidence=B6SPS8 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Smr protein/MutS2 C-terminal (IPR002625),Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013094F15;Expression=AK067137;TENOR=Os03t0856100-01;KEGG=Os03t0856100-01
Chr03	irgsp1_rep	five_prime_UTR	36107251	36107295	.	+	.	Parent=Os03t0856100-01
Chr03	irgsp1_rep	CDS	36107296	36107430	.	+	0	Parent=Os03t0856100-01
Chr03	irgsp1_rep	CDS	36107611	36109398	.	+	0	Parent=Os03t0856100-01
Chr03	irgsp1_rep	three_prime_UTR	36109399	36109822	.	+	.	Parent=Os03t0856100-01
Chr03	irgsp1_rep	mRNA	36110059	36119639	.	+	.	ID=Os03t0856200-01;Name=Os03t0856200-01;Locus_id=Os03g0856200;CGSNL Gene Symbol=KU80;Oryzabase Gene Symbol Synonym(s)=OsKu80%2C Ku80;Oryzabase Gene Name Synonym(s)=rice homolog of Ku80;Note=Similar to KAP-2.;Transcript_evidence=AK120953 (DDBJ%2C Best hit);ORF_evidence=Q75IP6 (UniProt);InterPro=Ku70/Ku80%2C N-terminal alpha/beta (IPR005161);NIAS_FLcDNA=J023038P17;Oryzabase=11608;Expression=AK120953;TENOR=Os03t0856200-01;KEGG=Os03t0856200-01
Chr03	irgsp1_rep	five_prime_UTR	36110059	36110232	.	+	.	Parent=Os03t0856200-01
Chr03	irgsp1_rep	five_prime_UTR	36110459	36110572	.	+	.	Parent=Os03t0856200-01
Chr03	irgsp1_rep	five_prime_UTR	36111328	36111407	.	+	.	Parent=Os03t0856200-01
Chr03	irgsp1_rep	five_prime_UTR	36111530	36111654	.	+	.	Parent=Os03t0856200-01
Chr03	irgsp1_rep	five_prime_UTR	36111766	36112084	.	+	.	Parent=Os03t0856200-01
Chr03	irgsp1_rep	five_prime_UTR	36114039	36114262	.	+	.	Parent=Os03t0856200-01
Chr03	irgsp1_rep	CDS	36114263	36114277	.	+	0	Parent=Os03t0856200-01
Chr03	irgsp1_rep	CDS	36114766	36114856	.	+	0	Parent=Os03t0856200-01
Chr03	irgsp1_rep	CDS	36114986	36115039	.	+	2	Parent=Os03t0856200-01
Chr03	irgsp1_rep	CDS	36115405	36115536	.	+	2	Parent=Os03t0856200-01
Chr03	irgsp1_rep	CDS	36116041	36116042	.	+	2	Parent=Os03t0856200-01
Chr03	irgsp1_rep	three_prime_UTR	36116043	36116395	.	+	.	Parent=Os03t0856200-01
Chr03	irgsp1_rep	three_prime_UTR	36116503	36116789	.	+	.	Parent=Os03t0856200-01
Chr03	irgsp1_rep	three_prime_UTR	36117539	36117734	.	+	.	Parent=Os03t0856200-01
Chr03	irgsp1_rep	three_prime_UTR	36117829	36118035	.	+	.	Parent=Os03t0856200-01
Chr03	irgsp1_rep	three_prime_UTR	36118315	36118471	.	+	.	Parent=Os03t0856200-01
Chr03	irgsp1_rep	three_prime_UTR	36118556	36118885	.	+	.	Parent=Os03t0856200-01
Chr03	irgsp1_rep	three_prime_UTR	36119024	36119154	.	+	.	Parent=Os03t0856200-01
Chr03	irgsp1_rep	three_prime_UTR	36119249	36119639	.	+	.	Parent=Os03t0856200-01
Chr03	irgsp1_rep	mRNA	36110081	36112000	.	+	.	ID=Os03t0856200-02;Name=Os03t0856200-02;Locus_id=Os03g0856200;CGSNL Gene Symbol=KU80;Oryzabase Gene Symbol Synonym(s)=OsKu80%2C Ku80;Oryzabase Gene Name Synonym(s)=rice homolog of Ku80;Note=Similar to Longin-like.;Transcript_evidence=AK058786 (DDBJ%2C Best hit);ORF_evidence=Q2HUA7 (UniProt);GO=Biological Process: transport (GO:0006810);InterPro=Longin-like (IPR011012),AP complex%2C mu/sigma subunit (IPR022775);NIAS_FLcDNA=001-002-E01;Oryzabase=11608;Expression=AK058786;TENOR=Os03t0856200-02;KEGG=Os03t0856200-02
Chr03	irgsp1_rep	five_prime_UTR	36110081	36110179	.	+	.	Parent=Os03t0856200-02
Chr03	irgsp1_rep	CDS	36110180	36110232	.	+	0	Parent=Os03t0856200-02
Chr03	irgsp1_rep	CDS	36110459	36110572	.	+	1	Parent=Os03t0856200-02
Chr03	irgsp1_rep	CDS	36111328	36111407	.	+	1	Parent=Os03t0856200-02
Chr03	irgsp1_rep	CDS	36111530	36111654	.	+	2	Parent=Os03t0856200-02
Chr03	irgsp1_rep	CDS	36111766	36111837	.	+	0	Parent=Os03t0856200-02
Chr03	irgsp1_rep	three_prime_UTR	36111838	36112000	.	+	.	Parent=Os03t0856200-02
Chr03	irgsp1_rep	mRNA	36114020	36119572	.	+	.	ID=Os03t0856200-03;Name=Os03t0856200-03;Locus_id=Os03g0856200;CGSNL Gene Symbol=KU80;Oryzabase Gene Symbol Synonym(s)=OsKu80%2C Ku80;Oryzabase Gene Name Synonym(s)=rice homolog of Ku80;Note=Similar to KAP-2.;Transcript_evidence=AK070146 (DDBJ%2C Best hit);ORF_evidence=Q75IP6 (UniProt);GO=Biological Process: double-strand break repair via nonhomologous end joining (GO:0006303),Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP-dependent DNA helicase activity (GO:0004003),Molecular Function: binding (GO:0005488);InterPro=Ku70/Ku80%2C N-terminal alpha/beta (IPR005161),DNA helicase%2C ATP-dependent%2C Ku type (IPR006164),Spen Paralogue and Orthologue SPOC%2C C-terminal-like (IPR016194);NIAS_FLcDNA=J023042F12;Oryzabase=11608;Expression=AK070146;TENOR=Os03t0856200-03;KEGG=Os03t0856200-03
Chr03	irgsp1_rep	five_prime_UTR	36114020	36114262	.	+	.	Parent=Os03t0856200-03
Chr03	irgsp1_rep	CDS	36114263	36114277	.	+	0	Parent=Os03t0856200-03
Chr03	irgsp1_rep	CDS	36114766	36114856	.	+	0	Parent=Os03t0856200-03
Chr03	irgsp1_rep	CDS	36114986	36115039	.	+	2	Parent=Os03t0856200-03
Chr03	irgsp1_rep	CDS	36115405	36115536	.	+	2	Parent=Os03t0856200-03
Chr03	irgsp1_rep	CDS	36116001	36116395	.	+	2	Parent=Os03t0856200-03
Chr03	irgsp1_rep	CDS	36116503	36116793	.	+	0	Parent=Os03t0856200-03
Chr03	irgsp1_rep	three_prime_UTR	36116794	36117734	.	+	.	Parent=Os03t0856200-03
Chr03	irgsp1_rep	three_prime_UTR	36117829	36118471	.	+	.	Parent=Os03t0856200-03
Chr03	irgsp1_rep	three_prime_UTR	36118556	36118885	.	+	.	Parent=Os03t0856200-03
Chr03	irgsp1_rep	three_prime_UTR	36119024	36119154	.	+	.	Parent=Os03t0856200-03
Chr03	irgsp1_rep	three_prime_UTR	36119249	36119572	.	+	.	Parent=Os03t0856200-03
Chr03	irgsp1_rep	mRNA	36114048	36118468	.	+	.	ID=Os03t0856200-04;Name=Os03t0856200-04;Locus_id=Os03g0856200;CGSNL Gene Symbol=KU80;Oryzabase Gene Symbol Synonym(s)=OsKu80%2C Ku80;Oryzabase Gene Name Synonym(s)=rice homolog of Ku80;Note=Similar to KAP-2.;Transcript_evidence=AK064097 (DDBJ%2C Best hit);ORF_evidence=Q75IP6 (UniProt);GO=Biological Process: double-strand break repair via nonhomologous end joining (GO:0006303),Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP-dependent DNA helicase activity (GO:0004003),Molecular Function: binding (GO:0005488);InterPro=Ku70/Ku80 C-terminal arm (IPR005160),Ku70/Ku80%2C N-terminal alpha/beta (IPR005161),DNA helicase%2C ATP-dependent%2C Ku type (IPR006164),Spen Paralogue and Orthologue SPOC%2C C-terminal-like (IPR016194);NIAS_FLcDNA=002-100-G04;Oryzabase=11608;Expression=AK064097;TENOR=Os03t0856200-04;KEGG=Os03t0856200-04
Chr03	irgsp1_rep	five_prime_UTR	36114048	36114262	.	+	.	Parent=Os03t0856200-04
Chr03	irgsp1_rep	CDS	36114263	36114277	.	+	0	Parent=Os03t0856200-04
Chr03	irgsp1_rep	CDS	36114766	36114856	.	+	0	Parent=Os03t0856200-04
Chr03	irgsp1_rep	CDS	36114986	36115039	.	+	2	Parent=Os03t0856200-04
Chr03	irgsp1_rep	CDS	36115405	36115536	.	+	2	Parent=Os03t0856200-04
Chr03	irgsp1_rep	CDS	36116001	36116395	.	+	2	Parent=Os03t0856200-04
Chr03	irgsp1_rep	CDS	36116503	36116789	.	+	0	Parent=Os03t0856200-04
Chr03	irgsp1_rep	CDS	36117539	36117734	.	+	1	Parent=Os03t0856200-04
Chr03	irgsp1_rep	CDS	36117829	36118035	.	+	0	Parent=Os03t0856200-04
Chr03	irgsp1_rep	CDS	36118304	36118468	.	+	0	Parent=Os03t0856200-04
Chr03	irgsp1_rep	mRNA	36113113	36113163	.	-	.	ID=Os03t0856250-00;Name=Os03t0856250-00;Locus_id=Os03g0856250;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0856250-00
Chr03	irgsp1_rep	exon	36113113	36113163	.	-	.	Parent=Os03t0856250-00
Chr03	irgsp1_rep	mRNA	36119706	36121963	.	-	.	ID=Os03t0856300-01;Name=Os03t0856300-01;Locus_id=Os03g0856300;Note=Similar to Acyl carrier protein III%2C chloroplast precursor (ACP III).;Transcript_evidence=AK108342 (DDBJ%2C Best hit);ORF_evidence=A2XP91 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Molecular Function: acyl carrier activity (GO:0000036),Molecular Function: phosphopantetheine binding (GO:0031177),Molecular Function: cofactor binding (GO:0048037);InterPro=Acyl carrier protein (ACP) (IPR003231),Phosphopantetheine attachment site (IPR006162),Phosphopantetheine-binding (IPR006163),Acyl carrier protein-like (IPR009081);NIAS_FLcDNA=002-142-B02;Expression=AK108342;TENOR=Os03t0856300-01;KEGG=Os03t0856300-01
Chr03	irgsp1_rep	five_prime_UTR	36121907	36121963	.	-	.	Parent=Os03t0856300-01
Chr03	irgsp1_rep	CDS	36121850	36121906	.	-	0	Parent=Os03t0856300-01
Chr03	irgsp1_rep	CDS	36121599	36121712	.	-	0	Parent=Os03t0856300-01
Chr03	irgsp1_rep	CDS	36120505	36120627	.	-	0	Parent=Os03t0856300-01
Chr03	irgsp1_rep	CDS	36119877	36120005	.	-	0	Parent=Os03t0856300-01
Chr03	irgsp1_rep	three_prime_UTR	36119706	36119876	.	-	.	Parent=Os03t0856300-01
Chr03	irgsp1_rep	mRNA	36124479	36131991	.	+	.	ID=Os03t0856400-01;Name=Os03t0856400-01;Locus_id=Os03g0856400;Oryzabase Gene Symbol Synonym(s)=OsCBSX8;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSX8%2C CBS domain containing protein OsCBSX8;Note=Similar to Protein kinase AKINbetagamma-2.;Transcript_evidence=AK111501 (DDBJ%2C Best hit);ORF_evidence=NP_001105555.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein binding (GO:0005515);InterPro=Cystathionine beta-synthase%2C core (IPR000644),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J013000N04;Oryzabase=10325;Expression=AK111501;TENOR=Os03t0856400-01;KEGG=Os03t0856400-01
Chr03	irgsp1_rep	five_prime_UTR	36124479	36124955	.	+	.	Parent=Os03t0856400-01
Chr03	irgsp1_rep	CDS	36124956	36125083	.	+	0	Parent=Os03t0856400-01
Chr03	irgsp1_rep	CDS	36126090	36126177	.	+	1	Parent=Os03t0856400-01
Chr03	irgsp1_rep	CDS	36126299	36126484	.	+	0	Parent=Os03t0856400-01
Chr03	irgsp1_rep	CDS	36127349	36127483	.	+	0	Parent=Os03t0856400-01
Chr03	irgsp1_rep	CDS	36127561	36127620	.	+	0	Parent=Os03t0856400-01
Chr03	irgsp1_rep	CDS	36128367	36128456	.	+	0	Parent=Os03t0856400-01
Chr03	irgsp1_rep	CDS	36129142	36129273	.	+	0	Parent=Os03t0856400-01
Chr03	irgsp1_rep	CDS	36129797	36129941	.	+	0	Parent=Os03t0856400-01
Chr03	irgsp1_rep	CDS	36130024	36130197	.	+	2	Parent=Os03t0856400-01
Chr03	irgsp1_rep	CDS	36130387	36130450	.	+	2	Parent=Os03t0856400-01
Chr03	irgsp1_rep	CDS	36130536	36130605	.	+	1	Parent=Os03t0856400-01
Chr03	irgsp1_rep	CDS	36131086	36131203	.	+	0	Parent=Os03t0856400-01
Chr03	irgsp1_rep	CDS	36131295	36131386	.	+	2	Parent=Os03t0856400-01
Chr03	irgsp1_rep	three_prime_UTR	36131387	36131991	.	+	.	Parent=Os03t0856400-01
Chr03	irgsp1_rep	mRNA	36124890	36131979	.	+	.	ID=Os03t0856400-02;Name=Os03t0856400-02;Locus_id=Os03g0856400;Oryzabase Gene Symbol Synonym(s)=OsCBSX8;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSX8%2C CBS domain containing protein OsCBSX8;Note=Similar to Protein kinase AKINbetagamma-2.;Transcript_evidence=AK102647 (DDBJ%2C Best hit);ORF_evidence=NP_001105555.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein binding (GO:0005515);InterPro=Cystathionine beta-synthase%2C core (IPR000644),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J033100L02;Oryzabase=10325;Expression=AK102647;TENOR=Os03t0856400-02;KEGG=Os03t0856400-02
Chr03	irgsp1_rep	five_prime_UTR	36124890	36124955	.	+	.	Parent=Os03t0856400-02
Chr03	irgsp1_rep	CDS	36124956	36125083	.	+	0	Parent=Os03t0856400-02
Chr03	irgsp1_rep	CDS	36126090	36126177	.	+	1	Parent=Os03t0856400-02
Chr03	irgsp1_rep	CDS	36126299	36126484	.	+	0	Parent=Os03t0856400-02
Chr03	irgsp1_rep	CDS	36127349	36127483	.	+	0	Parent=Os03t0856400-02
Chr03	irgsp1_rep	CDS	36127561	36127620	.	+	0	Parent=Os03t0856400-02
Chr03	irgsp1_rep	CDS	36128367	36128456	.	+	0	Parent=Os03t0856400-02
Chr03	irgsp1_rep	CDS	36129142	36129273	.	+	0	Parent=Os03t0856400-02
Chr03	irgsp1_rep	CDS	36129797	36129941	.	+	0	Parent=Os03t0856400-02
Chr03	irgsp1_rep	CDS	36130024	36130197	.	+	2	Parent=Os03t0856400-02
Chr03	irgsp1_rep	CDS	36130387	36130450	.	+	2	Parent=Os03t0856400-02
Chr03	irgsp1_rep	CDS	36130536	36130605	.	+	1	Parent=Os03t0856400-02
Chr03	irgsp1_rep	CDS	36131086	36131203	.	+	0	Parent=Os03t0856400-02
Chr03	irgsp1_rep	CDS	36131295	36131386	.	+	2	Parent=Os03t0856400-02
Chr03	irgsp1_rep	three_prime_UTR	36131387	36131979	.	+	.	Parent=Os03t0856400-02
Chr03	irgsp1_rep	mRNA	36132354	36134523	.	+	.	ID=Os03t0856500-01;Name=Os03t0856500-01;Locus_id=Os03g0856500;Note=Similar to Plastid-specific 30S ribosomal protein 1%2C chloroplast precursor (CS- S5) (CS5) (S22) (Ribosomal protein 1) (PSRP-1).;Transcript_evidence=AK104733 (DDBJ%2C Best hit),AK061449 (DDBJ%2C Best hit);ORF_evidence=C6YXL0 (UniProt);GO=Biological Process: primary metabolic process (GO:0044238),Molecular Function: binding (GO:0005488);InterPro=Ribosomal protein S30Ae/sigma 54 modulation protein (IPR003489);NIAS_FLcDNA=001-038-C09,006-307-E04;Expression=AK104733;TENOR=Os03t0856500-01;KEGG=Os03t0856500-01
Chr03	irgsp1_rep	five_prime_UTR	36132354	36132551	.	+	.	Parent=Os03t0856500-01
Chr03	irgsp1_rep	CDS	36132552	36132824	.	+	0	Parent=Os03t0856500-01
Chr03	irgsp1_rep	CDS	36133589	36134008	.	+	0	Parent=Os03t0856500-01
Chr03	irgsp1_rep	CDS	36134085	36134321	.	+	0	Parent=Os03t0856500-01
Chr03	irgsp1_rep	three_prime_UTR	36134322	36134523	.	+	.	Parent=Os03t0856500-01
Chr03	irgsp1_rep	mRNA	36132488	36134532	.	+	.	ID=Os03t0856500-02;Name=Os03t0856500-02;Locus_id=Os03g0856500;Note=Similar to Plastid-specific 30S ribosomal protein 1%2C chloroplast precursor (CS- S5) (CS5) (S22) (Ribosomal protein 1) (PSRP-1).;Transcript_evidence=AK071750 (DDBJ%2C Best hit);ORF_evidence=C6YXL0 (UniProt);GO=Biological Process: primary metabolic process (GO:0044238),Molecular Function: binding (GO:0005488);InterPro=Ribosomal protein S30Ae/sigma 54 modulation protein (IPR003489);NIAS_FLcDNA=J023111O04;Expression=AK071750;TENOR=Os03t0856500-02;KEGG=Os03t0856500-02
Chr03	irgsp1_rep	five_prime_UTR	36132488	36132551	.	+	.	Parent=Os03t0856500-02
Chr03	irgsp1_rep	CDS	36132552	36132824	.	+	0	Parent=Os03t0856500-02
Chr03	irgsp1_rep	CDS	36133589	36134008	.	+	0	Parent=Os03t0856500-02
Chr03	irgsp1_rep	CDS	36134085	36134321	.	+	0	Parent=Os03t0856500-02
Chr03	irgsp1_rep	three_prime_UTR	36134322	36134532	.	+	.	Parent=Os03t0856500-02
Chr03	irgsp1_rep	mRNA	36150664	36152159	.	+	.	ID=Os03t0856700-01;Name=Os03t0856700-01;Locus_id=Os03g0856700;CGSNL Gene Symbol=GNP1;CGSNL Gene Name=GRAIN NUMBER PER PANICLE 1;Oryzabase Gene Symbol Synonym(s)=GA20OX1%2C OsGA20ox1%2C 20ox1%2C GA20ox-1%2C ga20ox1%2C Os20ox%2C C20OX2%2C OsGA20ox2%2C OsGA20ox-1%2C GA20ox1%2C OsGNP1;Oryzabase Gene Name Synonym(s)=GIBBERELLIN 20-OXIDASE 1%2C rice GA 20-oxidase1%2C GA 20-oxidase1%2C Gibberellin 20 oxidase 1%2C Gibberellin C-20 oxidase 1%2C GA 20-oxidase 1%2C GA20 oxidase-1%2C GA 20-oxidase 1%2C GA20 oxidase%2C Gibberellin C-20 oxidase%2C Grain Number per Panicle1;Note=Gibberellin 20 oxidase 1 (EC 1.14.11.-) (Gibberellin C-20 oxidase 1) (GA 20-oxidase 1) (Os20ox).;Transcript_evidence=AK061017 (DDBJ%2C Best hit);ORF_evidence=P93771 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Isopenicillin N synthase (IPR002283),Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=006-204-B11;Oryzabase=3116;Expression=AK061017;TENOR=Os03t0856700-01;KEGG=Os03t0856700-01 (EC:1.14.11.12)
Chr03	irgsp1_rep	five_prime_UTR	36150664	36150924	.	+	.	Parent=Os03t0856700-01
Chr03	irgsp1_rep	CDS	36150925	36152043	.	+	0	Parent=Os03t0856700-01
Chr03	irgsp1_rep	three_prime_UTR	36152044	36152159	.	+	.	Parent=Os03t0856700-01
Chr03	irgsp1_rep	mRNA	36150736	36152355	.	+	.	ID=Os03t0856700-02;Name=Os03t0856700-02;Locus_id=Os03g0856700;RAP-DB Gene Symbol Synonym(s)=GA20OX1%2C OsGA20ox1%2C 20ox1%2C GA20ox-1%2C ga20ox1%2C Os20ox%2C C20OX2;RAP-DB Gene Name Synonym(s)=GIBBERELLIN 20-OXIDASE 1%2C Oryza sativa GA C20oxidase 1%2C rice GA 20-oxidase1%2C GA 20-oxidase1%2C Gibberellin 20 oxidase 1%2C Gibberellin C-20 oxidase 1%2C GA 20-oxidase 1%2C GA20 oxidase-1%2C GA 20-oxidase 1%2C GA20 oxidase%2C Gibberellin C-20 oxidase;CGSNL Gene Symbol=GNP1;CGSNL Gene Name=GRAIN NUMBER PER PANICLE 1;Oryzabase Gene Symbol Synonym(s)=GA20OX1%2C OsGA20ox1%2C 20ox1%2C GA20ox-1%2C ga20ox1%2C Os20ox%2C C20OX2%2C OsGA20ox2%2C OsGA20ox-1%2C GA20ox1%2C OsGNP1;Oryzabase Gene Name Synonym(s)=GIBBERELLIN 20-OXIDASE 1%2C rice GA 20-oxidase1%2C GA 20-oxidase1%2C Gibberellin 20 oxidase 1%2C Gibberellin C-20 oxidase 1%2C GA 20-oxidase 1%2C GA20 oxidase-1%2C GA 20-oxidase 1%2C GA20 oxidase%2C Gibberellin C-20 oxidase%2C Grain Number per Panicle1;Note=GA 20-oxidase1%2C GA metabolism;Transcript_evidence=U50333 (Genbank),AK099111 (Genbank);ORF_evidence=P93771 (UniProt), Q10AC7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Isopenicillin N synthase (IPR002283),Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=J023031H24;Manual Curation=May 22%2C 2009;Literature_PMID=15604710,15075394;Oryzabase=3116;Expression=AK099111;TENOR=Os03t0856700-02;KEGG=Os03t0856700-02 (EC:1.14.11.12);B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	36150736	36150924	.	+	.	Parent=Os03t0856700-02
Chr03	irgsp1_rep	CDS	36150925	36152043	.	+	0	Parent=Os03t0856700-02
Chr03	irgsp1_rep	three_prime_UTR	36152044	36152355	.	+	.	Parent=Os03t0856700-02
Chr03	irgsp1_rep	mRNA	36171635	36172326	.	+	.	ID=Os03t0857000-01;Name=Os03t0857000-01;Locus_id=Os03g0857000;Note=Hypothetical conserved gene.;Transcript_evidence=AK120418 (DDBJ%2C Best hit);ORF_evidence=B8ANS1 (UniProt);NIAS_FLcDNA=J013093M17;Expression=AK120418;TENOR=Os03t0857000-01;KEGG=Os03t0857000-01
Chr03	irgsp1_rep	five_prime_UTR	36171635	36172068	.	+	.	Parent=Os03t0857000-01
Chr03	irgsp1_rep	CDS	36172069	36172290	.	+	0	Parent=Os03t0857000-01
Chr03	irgsp1_rep	three_prime_UTR	36172291	36172326	.	+	.	Parent=Os03t0857000-01
Chr03	irgsp1_rep	mRNA	36174874	36175370	.	+	.	ID=Os03t0857100-01;Name=Os03t0857100-01;Locus_id=Os03g0857100;Note=Hypothetical protein.;Transcript_evidence=AK105192 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-107-D10;TENOR=Os03t0857100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	36174874	36175021	.	+	.	Parent=Os03t0857100-01
Chr03	irgsp1_rep	CDS	36175022	36175330	.	+	0	Parent=Os03t0857100-01
Chr03	irgsp1_rep	three_prime_UTR	36175331	36175370	.	+	.	Parent=Os03t0857100-01
Chr03	irgsp1_rep	mRNA	36176423	36180182	.	-	.	ID=Os03t0857200-01;Name=Os03t0857200-01;Locus_id=Os03g0857200;Note=Conserved hypothetical protein.;Transcript_evidence=AK287789 (DDBJ%2C Best hit);ORF_evidence=NP_001051954.1 (RefSeq);NIAS_FLcDNA=J065172O08;TENOR=Os03t0857200-01;KEGG=Os03t0857200-01
Chr03	irgsp1_rep	five_prime_UTR	36179612	36180182	.	-	.	Parent=Os03t0857200-01
Chr03	irgsp1_rep	CDS	36179351	36179611	.	-	0	Parent=Os03t0857200-01
Chr03	irgsp1_rep	three_prime_UTR	36179318	36179350	.	-	.	Parent=Os03t0857200-01
Chr03	irgsp1_rep	three_prime_UTR	36178397	36179073	.	-	.	Parent=Os03t0857200-01
Chr03	irgsp1_rep	three_prime_UTR	36177845	36177906	.	-	.	Parent=Os03t0857200-01
Chr03	irgsp1_rep	three_prime_UTR	36176423	36177622	.	-	.	Parent=Os03t0857200-01
Chr03	irgsp1_rep	mRNA	36177367	36180173	.	-	.	ID=Os03t0857200-02;Name=Os03t0857200-02;Locus_id=Os03g0857200;Note=Conserved hypothetical protein.;Transcript_evidence=AK064688 (DDBJ%2C Best hit);ORF_evidence=Q109X0 (UniProt);NIAS_FLcDNA=002-116-E01;TENOR=Os03t0857200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	36179318	36180173	.	-	.	Parent=Os03t0857200-02
Chr03	irgsp1_rep	five_prime_UTR	36178486	36179073	.	-	.	Parent=Os03t0857200-02
Chr03	irgsp1_rep	CDS	36178397	36178485	.	-	0	Parent=Os03t0857200-02
Chr03	irgsp1_rep	CDS	36177565	36177622	.	-	1	Parent=Os03t0857200-02
Chr03	irgsp1_rep	three_prime_UTR	36177367	36177564	.	-	.	Parent=Os03t0857200-02
Chr03	irgsp1_rep	mRNA	36177802	36178475	.	+	.	ID=Os03t0857301-00;Name=Os03t0857301-00;Locus_id=Os03g0857301;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os03t0857301-00
Chr03	irgsp1_rep	CDS	36177802	36177961	.	+	0	Parent=Os03t0857301-00
Chr03	irgsp1_rep	CDS	36178408	36178475	.	+	2	Parent=Os03t0857301-00
Chr03	irgsp1_rep	mRNA	36180601	36182960	.	-	.	ID=Os03t0857400-01;Name=Os03t0857400-01;Locus_id=Os03g0857400;Oryzabase Gene Name Synonym(s)=PGR5-like protein 1a%2C proton gradient regulation-5 like protein 1a;Note=tRNA-binding arm domain containing protein.;Transcript_evidence=AK098951 (DDBJ%2C Best hit),AK062137 (DDBJ%2C Best hit);ORF_evidence=NP_849422.1 (RefSeq);NIAS_FLcDNA=J013052N16,001-045-F08;Oryzabase=22004;Expression=AK098951;TENOR=Os03t0857400-01;KEGG=Os03t0857400-01
Chr03	irgsp1_rep	five_prime_UTR	36182871	36182960	.	-	.	Parent=Os03t0857400-01
Chr03	irgsp1_rep	CDS	36182456	36182870	.	-	0	Parent=Os03t0857400-01
Chr03	irgsp1_rep	CDS	36182269	36182369	.	-	2	Parent=Os03t0857400-01
Chr03	irgsp1_rep	CDS	36182064	36182120	.	-	0	Parent=Os03t0857400-01
Chr03	irgsp1_rep	CDS	36181729	36181805	.	-	0	Parent=Os03t0857400-01
Chr03	irgsp1_rep	CDS	36181492	36181540	.	-	1	Parent=Os03t0857400-01
Chr03	irgsp1_rep	CDS	36181291	36181401	.	-	0	Parent=Os03t0857400-01
Chr03	irgsp1_rep	CDS	36181083	36181180	.	-	0	Parent=Os03t0857400-01
Chr03	irgsp1_rep	CDS	36180877	36180943	.	-	1	Parent=Os03t0857400-01
Chr03	irgsp1_rep	three_prime_UTR	36180601	36180876	.	-	.	Parent=Os03t0857400-01
Chr03	irgsp1_rep	mRNA	36184687	36186335	.	-	.	ID=Os03t0857500-01;Name=Os03t0857500-01;Locus_id=Os03g0857500;Note=Protein of unknown function DUF303%2C acetylesterase putative domain containing protein.;Transcript_evidence=AK072880 (DDBJ%2C Best hit);ORF_evidence=NP_001150914.1 (RefSeq);InterPro=Domain of unknown function DUF303%2C acetylesterase putative (IPR005181),Esterase%2C SGNH hydrolase-type (IPR013830);NIAS_FLcDNA=J023146D23;Oryzabase=20452;Expression=AK072880;TENOR=Os03t0857500-01;KEGG=Os03t0857500-01
Chr03	irgsp1_rep	five_prime_UTR	36186335	36186335	.	-	.	Parent=Os03t0857500-01
Chr03	irgsp1_rep	CDS	36185780	36186334	.	-	0	Parent=Os03t0857500-01
Chr03	irgsp1_rep	CDS	36184823	36185026	.	-	0	Parent=Os03t0857500-01
Chr03	irgsp1_rep	three_prime_UTR	36184687	36184822	.	-	.	Parent=Os03t0857500-01
Chr03	irgsp1_rep	mRNA	36184724	36185434	.	-	.	ID=Os03t0857500-02;Name=Os03t0857500-02;Locus_id=Os03g0857500;Note=Similar to H0201G08.9 protein.;Transcript_evidence=AK062332 (DDBJ%2C Best hit);ORF_evidence=Q25AD4 (UniProt);InterPro=Esterase%2C SGNH hydrolase-type (IPR013830);NIAS_FLcDNA=001-101-D11;Oryzabase=20452;Expression=AK062332;TENOR=Os03t0857500-02;KEGG=Os03t0857500-02
Chr03	irgsp1_rep	five_prime_UTR	36185222	36185434	.	-	.	Parent=Os03t0857500-02
Chr03	irgsp1_rep	CDS	36185117	36185221	.	-	0	Parent=Os03t0857500-02
Chr03	irgsp1_rep	CDS	36184823	36185026	.	-	0	Parent=Os03t0857500-02
Chr03	irgsp1_rep	three_prime_UTR	36184724	36184822	.	-	.	Parent=Os03t0857500-02
Chr03	irgsp1_rep	mRNA	36189261	36190366	.	+	.	ID=Os03t0857600-01;Name=Os03t0857600-01;Locus_id=Os03g0857600;Note=Protein of unknown function DUF303%2C acetylesterase putative domain containing protein.;Transcript_evidence=AK061073 (DDBJ%2C Best hit),AK100733 (DDBJ%2C Best hit);ORF_evidence=NP_001150914.1 (RefSeq);InterPro=Domain of unknown function DUF303%2C acetylesterase putative (IPR005181),Esterase%2C SGNH hydrolase-type (IPR013830);NIAS_FLcDNA=006-206-D05,J023117O12;Expression=AK061073;TENOR=Os03t0857600-01;KEGG=Os03t0857600-01
Chr03	irgsp1_rep	five_prime_UTR	36189261	36189410	.	+	.	Parent=Os03t0857600-01
Chr03	irgsp1_rep	CDS	36189411	36190211	.	+	0	Parent=Os03t0857600-01
Chr03	irgsp1_rep	three_prime_UTR	36190212	36190366	.	+	.	Parent=Os03t0857600-01
Chr03	irgsp1_rep	mRNA	36193368	36193680	.	-	.	ID=Os03t0857750-00;Name=Os03t0857750-00;Locus_id=Os03g0857750;Note=Similar to predicted protein.;Transcript_evidence=CT829136 (DDBJ%2C Best hit);ORF_evidence=NP_001173722.1 (RefSeq);TENOR=Os03t0857750-00;KEGG=Os03t0857750-00
Chr03	irgsp1_rep	five_prime_UTR	36193679	36193680	.	-	.	Parent=Os03t0857750-00
Chr03	irgsp1_rep	CDS	36193541	36193678	.	-	0	Parent=Os03t0857750-00
Chr03	irgsp1_rep	three_prime_UTR	36193368	36193540	.	-	.	Parent=Os03t0857750-00
Chr03	irgsp1_rep	mRNA	36203964	36205153	.	+	.	ID=Os03t0857900-02;Name=Os03t0857900-02;Locus_id=Os03g0857900;CGSNL Gene Symbol=LOGL5;CGSNL Gene Name=LONELY GUY LIKE PHOSPHORIBOHYDROLASE 5;Oryzabase Gene Symbol Synonym(s)=LOGL5;Oryzabase Gene Name Synonym(s)=LOG LIKE phosphoribohydrolase 5%2C LOG LIKE 5%2C LOG-LIKE 5;Note=Similar to Lysine decarboxylase-like protein.;Transcript_evidence=AK071705 (DDBJ%2C Best hit),AK061341 (DDBJ%2C Best hit);ORF_evidence=Q8L8B8 (UniProt);InterPro=Cytokinin riboside 5&apos%3B-monophosphate phosphoribohydrolase LOG (IPR005269);NIAS_FLcDNA=J023109G23,006-303-E01;Oryzabase=9850;Expression=AK071705;TENOR=Os03t0857900-02;KEGG=Os03t0857900-02
Chr03	irgsp1_rep	five_prime_UTR	36203964	36204110	.	+	.	Parent=Os03t0857900-02
Chr03	irgsp1_rep	CDS	36204111	36204851	.	+	0	Parent=Os03t0857900-02
Chr03	irgsp1_rep	three_prime_UTR	36204852	36205153	.	+	.	Parent=Os03t0857900-02
Chr03	irgsp1_rep	mRNA	36204024	36205110	.	+	.	ID=Os03t0857900-04;Name=Os03t0857900-04;Locus_id=Os03g0857900;CGSNL Gene Symbol=LOGL5;CGSNL Gene Name=LONELY GUY LIKE PHOSPHORIBOHYDROLASE 5;Oryzabase Gene Symbol Synonym(s)=LOGL5;Oryzabase Gene Name Synonym(s)=LOG LIKE phosphoribohydrolase 5%2C LOG LIKE 5%2C LOG-LIKE 5;Note=Similar to Lysine decarboxylase-like protein.;Transcript_evidence=AK059762 (DDBJ%2C Best hit),AK104022 (DDBJ%2C Best hit);ORF_evidence=Q8L8B8 (UniProt);InterPro=Cytokinin riboside 5&apos%3B-monophosphate phosphoribohydrolase LOG (IPR005269);NIAS_FLcDNA=006-203-F07,001-008-E12;Oryzabase=9850;Expression=AK059762;TENOR=Os03t0857900-04;KEGG=Os03t0857900-04
Chr03	irgsp1_rep	five_prime_UTR	36204024	36204110	.	+	.	Parent=Os03t0857900-04
Chr03	irgsp1_rep	CDS	36204111	36204851	.	+	0	Parent=Os03t0857900-04
Chr03	irgsp1_rep	three_prime_UTR	36204852	36205110	.	+	.	Parent=Os03t0857900-04
Chr03	irgsp1_rep	mRNA	36212775	36223132	.	-	.	ID=Os03t0858100-01;Name=Os03t0858100-01;Locus_id=Os03g0858100;Note=Similar to CRM1 protein (Fragment).;Transcript_evidence=AK100745 (DDBJ%2C Best hit);ORF_evidence=D1MAF2 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Molecular Function: binding (GO:0005488),Molecular Function: protein transporter activity (GO:0008565);InterPro=Importin-beta%2C N-terminal (IPR001494),Armadillo-like helical (IPR011989),Exportin-1/Importin-beta-like (IPR013598),Exportin 1%2C C-terminal (IPR014877),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023118H18;Expression=AK100745;TENOR=Os03t0858100-01;KEGG=Os03t0858100-01
Chr03	irgsp1_rep	five_prime_UTR	36222898	36223132	.	-	.	Parent=Os03t0858100-01
Chr03	irgsp1_rep	CDS	36222802	36222897	.	-	0	Parent=Os03t0858100-01
Chr03	irgsp1_rep	CDS	36222252	36222368	.	-	0	Parent=Os03t0858100-01
Chr03	irgsp1_rep	CDS	36221205	36221297	.	-	0	Parent=Os03t0858100-01
Chr03	irgsp1_rep	CDS	36221032	36221103	.	-	0	Parent=Os03t0858100-01
Chr03	irgsp1_rep	CDS	36220813	36220920	.	-	0	Parent=Os03t0858100-01
Chr03	irgsp1_rep	CDS	36220663	36220745	.	-	0	Parent=Os03t0858100-01
Chr03	irgsp1_rep	CDS	36220384	36220522	.	-	1	Parent=Os03t0858100-01
Chr03	irgsp1_rep	CDS	36220226	36220294	.	-	0	Parent=Os03t0858100-01
Chr03	irgsp1_rep	CDS	36219920	36219997	.	-	0	Parent=Os03t0858100-01
Chr03	irgsp1_rep	CDS	36219750	36219809	.	-	0	Parent=Os03t0858100-01
Chr03	irgsp1_rep	CDS	36219594	36219638	.	-	0	Parent=Os03t0858100-01
Chr03	irgsp1_rep	CDS	36219208	36219315	.	-	0	Parent=Os03t0858100-01
Chr03	irgsp1_rep	CDS	36219030	36219125	.	-	0	Parent=Os03t0858100-01
Chr03	irgsp1_rep	CDS	36218661	36218861	.	-	0	Parent=Os03t0858100-01
Chr03	irgsp1_rep	CDS	36218470	36218529	.	-	0	Parent=Os03t0858100-01
Chr03	irgsp1_rep	CDS	36217971	36218081	.	-	0	Parent=Os03t0858100-01
Chr03	irgsp1_rep	CDS	36217737	36217834	.	-	0	Parent=Os03t0858100-01
Chr03	irgsp1_rep	CDS	36217552	36217660	.	-	1	Parent=Os03t0858100-01
Chr03	irgsp1_rep	CDS	36217230	36217295	.	-	0	Parent=Os03t0858100-01
Chr03	irgsp1_rep	CDS	36216956	36217054	.	-	0	Parent=Os03t0858100-01
Chr03	irgsp1_rep	CDS	36216784	36216864	.	-	0	Parent=Os03t0858100-01
Chr03	irgsp1_rep	CDS	36216612	36216701	.	-	0	Parent=Os03t0858100-01
Chr03	irgsp1_rep	CDS	36215930	36216015	.	-	0	Parent=Os03t0858100-01
Chr03	irgsp1_rep	CDS	36215315	36215395	.	-	1	Parent=Os03t0858100-01
Chr03	irgsp1_rep	CDS	36215036	36215218	.	-	1	Parent=Os03t0858100-01
Chr03	irgsp1_rep	CDS	36214807	36214873	.	-	1	Parent=Os03t0858100-01
Chr03	irgsp1_rep	CDS	36214610	36214720	.	-	0	Parent=Os03t0858100-01
Chr03	irgsp1_rep	CDS	36214374	36214481	.	-	0	Parent=Os03t0858100-01
Chr03	irgsp1_rep	CDS	36214156	36214293	.	-	0	Parent=Os03t0858100-01
Chr03	irgsp1_rep	CDS	36213947	36214078	.	-	0	Parent=Os03t0858100-01
Chr03	irgsp1_rep	CDS	36213771	36213875	.	-	0	Parent=Os03t0858100-01
Chr03	irgsp1_rep	CDS	36213206	36213328	.	-	0	Parent=Os03t0858100-01
Chr03	irgsp1_rep	three_prime_UTR	36212775	36213205	.	-	.	Parent=Os03t0858100-01
Chr03	irgsp1_rep	mRNA	36212766	36216020	.	-	.	ID=Os03t0858100-02;Name=Os03t0858100-02;Locus_id=Os03g0858100;Note=Similar to predicted protein.;Transcript_evidence=AK072679 (DDBJ%2C Best hit);ORF_evidence=D1MAF2 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Exportin 1%2C C-terminal (IPR014877),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023136O19;Expression=AK072679;TENOR=Os03t0858100-02;KEGG=Os03t0858100-02
Chr03	irgsp1_rep	five_prime_UTR	36216019	36216020	.	-	.	Parent=Os03t0858100-02
Chr03	irgsp1_rep	CDS	36215930	36216018	.	-	0	Parent=Os03t0858100-02
Chr03	irgsp1_rep	CDS	36215315	36215395	.	-	1	Parent=Os03t0858100-02
Chr03	irgsp1_rep	CDS	36215036	36215218	.	-	1	Parent=Os03t0858100-02
Chr03	irgsp1_rep	CDS	36214807	36214873	.	-	1	Parent=Os03t0858100-02
Chr03	irgsp1_rep	CDS	36214610	36214720	.	-	0	Parent=Os03t0858100-02
Chr03	irgsp1_rep	CDS	36214374	36214481	.	-	0	Parent=Os03t0858100-02
Chr03	irgsp1_rep	CDS	36214156	36214293	.	-	0	Parent=Os03t0858100-02
Chr03	irgsp1_rep	CDS	36213947	36214078	.	-	0	Parent=Os03t0858100-02
Chr03	irgsp1_rep	CDS	36213771	36213875	.	-	0	Parent=Os03t0858100-02
Chr03	irgsp1_rep	CDS	36213206	36213328	.	-	0	Parent=Os03t0858100-02
Chr03	irgsp1_rep	three_prime_UTR	36212766	36213205	.	-	.	Parent=Os03t0858100-02
Chr03	irgsp1_rep	mRNA	36224273	36225086	.	-	.	ID=Os03t0858200-01;Name=Os03t0858200-01;Locus_id=Os03g0858200;Note=Conserved hypothetical protein.;Transcript_evidence=AK110744 (DDBJ%2C Best hit);ORF_evidence=A2XPA5 (UniProt);NIAS_FLcDNA=002-170-F11;Expression=AK110744;TENOR=Os03t0858200-01;KEGG=Os03t0858200-01
Chr03	irgsp1_rep	five_prime_UTR	36224908	36225086	.	-	.	Parent=Os03t0858200-01
Chr03	irgsp1_rep	CDS	36224482	36224907	.	-	0	Parent=Os03t0858200-01
Chr03	irgsp1_rep	three_prime_UTR	36224273	36224481	.	-	.	Parent=Os03t0858200-01
Chr03	irgsp1_rep	mRNA	36228699	36232916	.	+	.	ID=Os03t0858400-01;Name=Os03t0858400-01;Locus_id=Os03g0858400;Oryzabase Gene Symbol Synonym(s)=OsWD40-97;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK102968 (DDBJ%2C Best hit);ORF_evidence=NP_567150.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J033115J18;Oryzabase=10778;Expression=AK102968;TENOR=Os03t0858400-01;KEGG=Os03t0858400-01
Chr03	irgsp1_rep	five_prime_UTR	36228699	36228783	.	+	.	Parent=Os03t0858400-01
Chr03	irgsp1_rep	CDS	36228784	36229014	.	+	0	Parent=Os03t0858400-01
Chr03	irgsp1_rep	CDS	36229538	36229643	.	+	0	Parent=Os03t0858400-01
Chr03	irgsp1_rep	CDS	36229890	36229950	.	+	2	Parent=Os03t0858400-01
Chr03	irgsp1_rep	CDS	36230036	36230331	.	+	1	Parent=Os03t0858400-01
Chr03	irgsp1_rep	CDS	36230412	36230551	.	+	2	Parent=Os03t0858400-01
Chr03	irgsp1_rep	CDS	36230638	36230712	.	+	0	Parent=Os03t0858400-01
Chr03	irgsp1_rep	CDS	36230802	36230892	.	+	0	Parent=Os03t0858400-01
Chr03	irgsp1_rep	CDS	36231435	36231638	.	+	2	Parent=Os03t0858400-01
Chr03	irgsp1_rep	CDS	36232167	36232211	.	+	2	Parent=Os03t0858400-01
Chr03	irgsp1_rep	CDS	36232503	36232588	.	+	2	Parent=Os03t0858400-01
Chr03	irgsp1_rep	three_prime_UTR	36232589	36232916	.	+	.	Parent=Os03t0858400-01
Chr03	irgsp1_rep	mRNA	36232653	36232911	.	+	.	ID=Os03t0858400-02;Name=Os03t0858400-02;Locus_id=Os03g0858400;Oryzabase Gene Symbol Synonym(s)=OsWD40-97;Note=Non-protein coding transcript.;Transcript_evidence=AK058362 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-014-F06;Oryzabase=10778;TENOR=Os03t0858400-02
Chr03	irgsp1_rep	exon	36232653	36232911	.	+	.	Parent=Os03t0858400-02
Chr03	irgsp1_rep	mRNA	36239056	36240813	.	-	.	ID=Os03t0858600-01;Name=Os03t0858600-01;Locus_id=Os03g0858600;CGSNL Gene Symbol=DUF668-5;CGSNL Gene Name=DUF668 FAMILY MEMBER 5;Oryzabase Gene Symbol Synonym(s)=OsDUF668-5;Oryzabase Gene Name Synonym(s)=DUF668 family member 5;Note=Protein of unknown function DUF668 family protein.;Transcript_evidence=AK102241 (DDBJ%2C Best hit);ORF_evidence=Q84M75 (UniProt);InterPro=Protein of unknown function DUF668 (IPR007700),Protein of unknown function DUF3475 (IPR021864);NIAS_FLcDNA=J033088D07;Oryzabase=23481;Expression=AK102241;TENOR=Os03t0858600-01;KEGG=Os03t0858600-01
Chr03	irgsp1_rep	five_prime_UTR	36240765	36240813	.	-	.	Parent=Os03t0858600-01
Chr03	irgsp1_rep	CDS	36239337	36240764	.	-	0	Parent=Os03t0858600-01
Chr03	irgsp1_rep	three_prime_UTR	36239056	36239336	.	-	.	Parent=Os03t0858600-01
Chr03	irgsp1_rep	mRNA	36243208	36245053	.	-	.	ID=Os03t0858700-01;Name=Os03t0858700-01;Locus_id=Os03g0858700;Note=Protein of unknown function DUF1499 family protein.;Transcript_evidence=AK064976 (DDBJ%2C Best hit),AK061723 (DDBJ%2C Best hit);ORF_evidence=B8ANT3 (UniProt);InterPro=Protein of unknown function DUF1499 (IPR010865);NIAS_FLcDNA=J013001B23,001-038-A06;Expression=AK064976;TENOR=Os03t0858700-01;KEGG=Os03t0858700-01
Chr03	irgsp1_rep	five_prime_UTR	36245012	36245053	.	-	.	Parent=Os03t0858700-01
Chr03	irgsp1_rep	CDS	36244890	36245011	.	-	0	Parent=Os03t0858700-01
Chr03	irgsp1_rep	CDS	36244715	36244771	.	-	1	Parent=Os03t0858700-01
Chr03	irgsp1_rep	CDS	36244513	36244638	.	-	1	Parent=Os03t0858700-01
Chr03	irgsp1_rep	CDS	36244359	36244434	.	-	1	Parent=Os03t0858700-01
Chr03	irgsp1_rep	CDS	36244110	36244202	.	-	0	Parent=Os03t0858700-01
Chr03	irgsp1_rep	CDS	36243766	36243881	.	-	0	Parent=Os03t0858700-01
Chr03	irgsp1_rep	CDS	36243594	36243645	.	-	1	Parent=Os03t0858700-01
Chr03	irgsp1_rep	three_prime_UTR	36243208	36243593	.	-	.	Parent=Os03t0858700-01
Chr03	irgsp1_rep	mRNA	36246086	36247682	.	-	.	ID=Os03t0858800-01;Name=Os03t0858800-01;Locus_id=Os03g0858800;Note=Multi antimicrobial extrusion protein MatE family protein.;Transcript_evidence=AK109467 (DDBJ%2C Best hit);ORF_evidence=NP_001150832.1 (RefSeq);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);NIAS_FLcDNA=001-128-C05;Expression=AK109467;TENOR=Os03t0858800-01;KEGG=Os03t0858800-01
Chr03	irgsp1_rep	five_prime_UTR	36247630	36247682	.	-	.	Parent=Os03t0858800-01
Chr03	irgsp1_rep	CDS	36246190	36247629	.	-	0	Parent=Os03t0858800-01
Chr03	irgsp1_rep	three_prime_UTR	36246086	36246189	.	-	.	Parent=Os03t0858800-01
Chr03	irgsp1_rep	mRNA	36256124	36259391	.	-	.	ID=Os03t0859100-01;Name=Os03t0859100-01;Locus_id=Os03g0859100;CGSNL Gene Symbol=GELP55;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 55;Oryzabase Gene Symbol Synonym(s)=OsGELP55%2C OsGELP55a%2C OsGELP55b;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 55;Note=Esterase%2C SGNH hydrolase-type domain containing protein.;Transcript_evidence=AK060992 (DDBJ%2C Best hit);ORF_evidence=NP_001150794.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=006-203-D07;Oryzabase=11005;Expression=AK060992;TENOR=Os03t0859100-01;KEGG=Os03t0859100-01
Chr03	irgsp1_rep	five_prime_UTR	36259202	36259391	.	-	.	Parent=Os03t0859100-01
Chr03	irgsp1_rep	CDS	36258919	36259201	.	-	0	Parent=Os03t0859100-01
Chr03	irgsp1_rep	CDS	36256316	36257130	.	-	2	Parent=Os03t0859100-01
Chr03	irgsp1_rep	three_prime_UTR	36256124	36256315	.	-	.	Parent=Os03t0859100-01
Chr03	irgsp1_rep	mRNA	36257743	36259391	.	-	.	ID=Os03t0859100-02;Name=Os03t0859100-02;Locus_id=Os03g0859100;CGSNL Gene Symbol=GELP55;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 55;Oryzabase Gene Symbol Synonym(s)=OsGELP55%2C OsGELP55a%2C OsGELP55b;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 55;Note=Similar to anther-specific proline-rich protein APG.;Transcript_evidence=AK109857 (DDBJ%2C Best hit);ORF_evidence=NP_001150794.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=002-148-G08;Oryzabase=11005;Expression=AK109857;TENOR=Os03t0859100-02;KEGG=Os03t0859100-02
Chr03	irgsp1_rep	five_prime_UTR	36259202	36259391	.	-	.	Parent=Os03t0859100-02
Chr03	irgsp1_rep	CDS	36258827	36259201	.	-	0	Parent=Os03t0859100-02
Chr03	irgsp1_rep	three_prime_UTR	36257743	36258826	.	-	.	Parent=Os03t0859100-02
Chr03	irgsp1_rep	mRNA	36256183	36257150	.	-	.	ID=Os03t0859100-03;Name=Os03t0859100-03;Locus_id=Os03g0859100;CGSNL Gene Symbol=GELP55;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 55;Oryzabase Gene Symbol Synonym(s)=OsGELP55%2C OsGELP55a%2C OsGELP55b;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 55;Note=Similar to anther-specific proline-rich protein APG.;Transcript_evidence=AK120038 (DDBJ%2C Best hit);ORF_evidence=NP_001150794.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087),Esterase%2C SGNH hydrolase-type%2C subgroup (IPR013831);NIAS_FLcDNA=002-188-E06;Oryzabase=11005;Expression=AK120038;TENOR=Os03t0859100-03;KEGG=Os03t0859100-03
Chr03	irgsp1_rep	five_prime_UTR	36257147	36257150	.	-	.	Parent=Os03t0859100-03
Chr03	irgsp1_rep	CDS	36256316	36257146	.	-	0	Parent=Os03t0859100-03
Chr03	irgsp1_rep	three_prime_UTR	36256183	36256315	.	-	.	Parent=Os03t0859100-03
Chr03	irgsp1_rep	mRNA	36265690	36271489	.	-	.	ID=Os03t0859300-01;Name=Os03t0859300-01;Locus_id=Os03g0859300;Note=Similar to La domain containing protein%2C expressed.;Transcript_evidence=AK073135 (DDBJ%2C Best hit);ORF_evidence=Q10AA9 (UniProt);InterPro=RNA-binding protein Lupus La (IPR006630),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=J033021I05;Expression=AK073135;TENOR=Os03t0859300-01;KEGG=Os03t0859300-01
Chr03	irgsp1_rep	five_prime_UTR	36271403	36271489	.	-	.	Parent=Os03t0859300-01
Chr03	irgsp1_rep	CDS	36271220	36271402	.	-	0	Parent=Os03t0859300-01
Chr03	irgsp1_rep	CDS	36270778	36271108	.	-	0	Parent=Os03t0859300-01
Chr03	irgsp1_rep	CDS	36270464	36270686	.	-	2	Parent=Os03t0859300-01
Chr03	irgsp1_rep	CDS	36270291	36270381	.	-	1	Parent=Os03t0859300-01
Chr03	irgsp1_rep	CDS	36266709	36266780	.	-	0	Parent=Os03t0859300-01
Chr03	irgsp1_rep	CDS	36266266	36266511	.	-	0	Parent=Os03t0859300-01
Chr03	irgsp1_rep	three_prime_UTR	36265690	36266265	.	-	.	Parent=Os03t0859300-01
Chr03	irgsp1_rep	mRNA	36265672	36271472	.	-	.	ID=Os03t0859300-02;Name=Os03t0859300-02;Locus_id=Os03g0859300;Note=Winged helix repressor DNA-binding domain containing protein.;Transcript_evidence=AK105297 (DDBJ%2C Best hit);ORF_evidence=Q10AA9 (UniProt);InterPro=RNA-binding protein Lupus La (IPR006630),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=001-116-H02;Expression=AK105297;TENOR=Os03t0859300-02;KEGG=Os03t0859300-02
Chr03	irgsp1_rep	five_prime_UTR	36271403	36271472	.	-	.	Parent=Os03t0859300-02
Chr03	irgsp1_rep	CDS	36271220	36271402	.	-	0	Parent=Os03t0859300-02
Chr03	irgsp1_rep	CDS	36270778	36271114	.	-	0	Parent=Os03t0859300-02
Chr03	irgsp1_rep	CDS	36270464	36270686	.	-	2	Parent=Os03t0859300-02
Chr03	irgsp1_rep	CDS	36270291	36270381	.	-	1	Parent=Os03t0859300-02
Chr03	irgsp1_rep	CDS	36266709	36266780	.	-	0	Parent=Os03t0859300-02
Chr03	irgsp1_rep	CDS	36266266	36266511	.	-	0	Parent=Os03t0859300-02
Chr03	irgsp1_rep	three_prime_UTR	36265672	36266265	.	-	.	Parent=Os03t0859300-02
Chr03	irgsp1_rep	mRNA	36273405	36278554	.	-	.	ID=Os03t0859500-01;Name=Os03t0859500-01;Locus_id=Os03g0859500;CGSNL Gene Symbol=ABCG7;CGSNL Gene Name=ABC TRANSPORTER G FAMILY MEMBER 7;Oryzabase Gene Symbol Synonym(s)=OsABCG7%2C OsABCG7_1%2C OsABCG7_2;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 7;Note=ABC transporter-like domain containing protein.;Transcript_evidence=AK070637 (DDBJ%2C Best hit);ORF_evidence=NP_850111.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC-2 type transporter (IPR013525);NIAS_FLcDNA=J023056J01;Oryzabase=11984;Expression=AK070637;TENOR=Os03t0859500-01;KEGG=Os03t0859500-01
Chr03	irgsp1_rep	five_prime_UTR	36278328	36278554	.	-	.	Parent=Os03t0859500-01
Chr03	irgsp1_rep	CDS	36277803	36278327	.	-	0	Parent=Os03t0859500-01
Chr03	irgsp1_rep	CDS	36277043	36277329	.	-	0	Parent=Os03t0859500-01
Chr03	irgsp1_rep	CDS	36276599	36276770	.	-	1	Parent=Os03t0859500-01
Chr03	irgsp1_rep	CDS	36275901	36276014	.	-	0	Parent=Os03t0859500-01
Chr03	irgsp1_rep	CDS	36275655	36275783	.	-	0	Parent=Os03t0859500-01
Chr03	irgsp1_rep	CDS	36274899	36275090	.	-	0	Parent=Os03t0859500-01
Chr03	irgsp1_rep	CDS	36274737	36274823	.	-	0	Parent=Os03t0859500-01
Chr03	irgsp1_rep	CDS	36274254	36274526	.	-	0	Parent=Os03t0859500-01
Chr03	irgsp1_rep	CDS	36274055	36274162	.	-	0	Parent=Os03t0859500-01
Chr03	irgsp1_rep	CDS	36273667	36273939	.	-	0	Parent=Os03t0859500-01
Chr03	irgsp1_rep	three_prime_UTR	36273405	36273666	.	-	.	Parent=Os03t0859500-01
Chr03	irgsp1_rep	mRNA	36281121	36282881	.	+	.	ID=Os03t0859550-01;Name=Os03t0859550-01;Locus_id=Os03g0859550;Note=Non-protein coding transcript.;Transcript_evidence=AK241487 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065166M05;TENOR=Os03t0859550-01
Chr03	irgsp1_rep	exon	36281121	36281211	.	+	.	Parent=Os03t0859550-01
Chr03	irgsp1_rep	exon	36282091	36282177	.	+	.	Parent=Os03t0859550-01
Chr03	irgsp1_rep	exon	36282268	36282881	.	+	.	Parent=Os03t0859550-01
Chr03	irgsp1_rep	mRNA	36281400	36283271	.	-	.	ID=Os03t0859600-01;Name=Os03t0859600-01;Locus_id=Os03g0859600;Oryzabase Gene Symbol Synonym(s)=OsCPn60alpha2%2C OsCPn60a2;Oryzabase Gene Name Synonym(s)=chaperonin 60 alpha subunit 2;Note=RuBisCO subunit binding-protein alpha subunit%2C chloroplast precursor (60 kDa chaperonin alpha subunit) (CPN-60 alpha).;Transcript_evidence=AK061901 (DDBJ%2C Best hit);ORF_evidence=B6SXW8 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: protein refolding (GO:0042026),Biological Process: cellular protein metabolic process (GO:0044267),Cellular Component: cytoplasm (GO:0005737),Molecular Function: ATP binding (GO:0005524);InterPro=Chaperonin Cpn60 (IPR001844),Chaperonin Cpn60/TCP-1 (IPR002423),Chaperonin Cpn60%2C conserved site (IPR018370);NIAS_FLcDNA=001-041-H05;Oryzabase=14349;Expression=AK061901;TENOR=Os03t0859600-01;KEGG=Os03t0859600-01
Chr03	irgsp1_rep	five_prime_UTR	36283270	36283271	.	-	.	Parent=Os03t0859600-01
Chr03	irgsp1_rep	CDS	36283077	36283269	.	-	0	Parent=Os03t0859600-01
Chr03	irgsp1_rep	CDS	36282074	36282525	.	-	2	Parent=Os03t0859600-01
Chr03	irgsp1_rep	CDS	36281566	36281859	.	-	0	Parent=Os03t0859600-01
Chr03	irgsp1_rep	three_prime_UTR	36281400	36281565	.	-	.	Parent=Os03t0859600-01
Chr03	irgsp1_rep	mRNA	36283803	36284798	.	-	.	ID=Os03t0859700-00;Name=Os03t0859700-00;Locus_id=Os03g0859700;Oryzabase Gene Symbol Synonym(s)=OsCPn60alpha2%2C OsCPn60a2;Oryzabase Gene Name Synonym(s)=chaperonin 60 alpha subunit 2;Note=Similar to RuBisCO subunit binding-protein alpha subunit%2C chloroplast precursor (60 kDa chaperonin alpha subunit) (CPN-60 alpha) (Fragment).;Transcript_evidence=AY224481 (DDBJ%2C Best hit);ORF_evidence=B6SXW8 (UniProt);GO=Biological Process: cellular protein metabolic process (GO:0044267),Molecular Function: ATP binding (GO:0005524);InterPro=Chaperonin Cpn60/TCP-1 (IPR002423),Chaperone%2C tailless complex polypeptide 1 (IPR017998);Oryzabase=14349;TENOR=Os03t0859700-00
Chr03	irgsp1_rep	five_prime_UTR	36284746	36284798	.	-	.	Parent=Os03t0859700-00
Chr03	irgsp1_rep	CDS	36284689	36284745	.	-	0	Parent=Os03t0859700-00
Chr03	irgsp1_rep	CDS	36284435	36284603	.	-	0	Parent=Os03t0859700-00
Chr03	irgsp1_rep	CDS	36284153	36284274	.	-	2	Parent=Os03t0859700-00
Chr03	irgsp1_rep	CDS	36283803	36284010	.	-	0	Parent=Os03t0859700-00
Chr03	irgsp1_rep	mRNA	36286355	36289213	.	-	.	ID=Os03t0859800-01;Name=Os03t0859800-01;Locus_id=Os03g0859800;Note=Ovarian tumour%2C otubain domain containing protein.;Transcript_evidence=AK071971 (DDBJ%2C Best hit);ORF_evidence=NP_001148776.1 (RefSeq);InterPro=Ovarian tumour%2C otubain (IPR003323);NIAS_FLcDNA=J013087H17;Expression=AK071971;TENOR=Os03t0859800-01;KEGG=Os03t0859800-01
Chr03	irgsp1_rep	five_prime_UTR	36289092	36289213	.	-	.	Parent=Os03t0859800-01
Chr03	irgsp1_rep	CDS	36288893	36289091	.	-	0	Parent=Os03t0859800-01
Chr03	irgsp1_rep	CDS	36288632	36288825	.	-	2	Parent=Os03t0859800-01
Chr03	irgsp1_rep	CDS	36288397	36288470	.	-	0	Parent=Os03t0859800-01
Chr03	irgsp1_rep	CDS	36288172	36288226	.	-	1	Parent=Os03t0859800-01
Chr03	irgsp1_rep	CDS	36288021	36288095	.	-	0	Parent=Os03t0859800-01
Chr03	irgsp1_rep	CDS	36287864	36287937	.	-	0	Parent=Os03t0859800-01
Chr03	irgsp1_rep	CDS	36287725	36287773	.	-	1	Parent=Os03t0859800-01
Chr03	irgsp1_rep	CDS	36287094	36287178	.	-	0	Parent=Os03t0859800-01
Chr03	irgsp1_rep	CDS	36286801	36286857	.	-	2	Parent=Os03t0859800-01
Chr03	irgsp1_rep	CDS	36286663	36286709	.	-	2	Parent=Os03t0859800-01
Chr03	irgsp1_rep	three_prime_UTR	36286355	36286662	.	-	.	Parent=Os03t0859800-01
Chr03	irgsp1_rep	mRNA	36286435	36288422	.	-	.	ID=Os03t0859800-02;Name=Os03t0859800-02;Locus_id=Os03g0859800;Note=Similar to cysteine-type peptidase.;Transcript_evidence=AK062741 (DDBJ%2C Best hit);ORF_evidence=NP_001148776.1 (RefSeq);InterPro=Ovarian tumour%2C otubain (IPR003323);NIAS_FLcDNA=001-106-F03;Expression=AK062741;TENOR=Os03t0859800-02;KEGG=Os03t0859800-02
Chr03	irgsp1_rep	CDS	36288397	36288422	.	-	0	Parent=Os03t0859800-02
Chr03	irgsp1_rep	CDS	36288172	36288226	.	-	1	Parent=Os03t0859800-02
Chr03	irgsp1_rep	CDS	36288021	36288095	.	-	0	Parent=Os03t0859800-02
Chr03	irgsp1_rep	CDS	36287864	36287937	.	-	0	Parent=Os03t0859800-02
Chr03	irgsp1_rep	CDS	36287725	36287773	.	-	1	Parent=Os03t0859800-02
Chr03	irgsp1_rep	CDS	36287094	36287178	.	-	0	Parent=Os03t0859800-02
Chr03	irgsp1_rep	CDS	36286801	36286857	.	-	2	Parent=Os03t0859800-02
Chr03	irgsp1_rep	CDS	36286663	36286709	.	-	2	Parent=Os03t0859800-02
Chr03	irgsp1_rep	three_prime_UTR	36286435	36286662	.	-	.	Parent=Os03t0859800-02
Chr03	irgsp1_rep	mRNA	36290006	36290344	.	+	.	ID=Os03t0859850-00;Name=Os03t0859850-00;Locus_id=Os03g0859850;Note=Non-protein coding transcript.;Transcript_evidence=EU946238 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0859850-00
Chr03	irgsp1_rep	exon	36290006	36290344	.	+	.	Parent=Os03t0859850-00
Chr03	irgsp1_rep	mRNA	36292039	36294776	.	+	.	ID=Os03t0859900-01;Name=Os03t0859900-01;Locus_id=Os03g0859900;Note=Protein of unknown function DUF547 domain containing protein.;Transcript_evidence=AK072837 (DDBJ%2C Best hit);ORF_evidence=Q7Y1E8 (UniProt);InterPro=Domain of unknown function DUF547 (IPR006869);NIAS_FLcDNA=J023141K21;Expression=AK072837;TENOR=Os03t0859900-01;KEGG=Os03t0859900-01
Chr03	irgsp1_rep	five_prime_UTR	36292039	36292353	.	+	.	Parent=Os03t0859900-01
Chr03	irgsp1_rep	five_prime_UTR	36292494	36292501	.	+	.	Parent=Os03t0859900-01
Chr03	irgsp1_rep	CDS	36292502	36292564	.	+	0	Parent=Os03t0859900-01
Chr03	irgsp1_rep	CDS	36292646	36292795	.	+	0	Parent=Os03t0859900-01
Chr03	irgsp1_rep	CDS	36292869	36293617	.	+	0	Parent=Os03t0859900-01
Chr03	irgsp1_rep	CDS	36293728	36293827	.	+	1	Parent=Os03t0859900-01
Chr03	irgsp1_rep	CDS	36293930	36294073	.	+	0	Parent=Os03t0859900-01
Chr03	irgsp1_rep	CDS	36294147	36294266	.	+	0	Parent=Os03t0859900-01
Chr03	irgsp1_rep	CDS	36294346	36294660	.	+	0	Parent=Os03t0859900-01
Chr03	irgsp1_rep	three_prime_UTR	36294661	36294776	.	+	.	Parent=Os03t0859900-01
Chr03	irgsp1_rep	mRNA	36295246	36299071	.	+	.	ID=Os03t0860000-01;Name=Os03t0860000-01;Locus_id=Os03g0860000;Note=ASCH domain domain containing protein.;Transcript_evidence=AK066505 (DDBJ%2C Best hit);ORF_evidence=Q7Y1E7 (UniProt);InterPro=ASCH domain (IPR007374),PUA-like domain (IPR015947);NIAS_FLcDNA=J013069E21;Expression=AK066505;TENOR=Os03t0860000-01;KEGG=Os03t0860000-01
Chr03	irgsp1_rep	five_prime_UTR	36295246	36295359	.	+	.	Parent=Os03t0860000-01
Chr03	irgsp1_rep	CDS	36295360	36295483	.	+	0	Parent=Os03t0860000-01
Chr03	irgsp1_rep	CDS	36295569	36295712	.	+	2	Parent=Os03t0860000-01
Chr03	irgsp1_rep	CDS	36295792	36295859	.	+	2	Parent=Os03t0860000-01
Chr03	irgsp1_rep	CDS	36295934	36296002	.	+	0	Parent=Os03t0860000-01
Chr03	irgsp1_rep	three_prime_UTR	36296003	36296153	.	+	.	Parent=Os03t0860000-01
Chr03	irgsp1_rep	three_prime_UTR	36296280	36296879	.	+	.	Parent=Os03t0860000-01
Chr03	irgsp1_rep	three_prime_UTR	36297277	36297360	.	+	.	Parent=Os03t0860000-01
Chr03	irgsp1_rep	three_prime_UTR	36298679	36299071	.	+	.	Parent=Os03t0860000-01
Chr03	irgsp1_rep	mRNA	36297578	36298220	.	-	.	ID=Os03t0860050-01;Name=Os03t0860050-01;Locus_id=Os03g0860050;Note=Hypothetical gene.;Transcript_evidence=AK243056 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100013M01;TENOR=Os03t0860050-01;KEGG=Os03t0860050-01
Chr03	irgsp1_rep	five_prime_UTR	36297922	36298220	.	-	.	Parent=Os03t0860050-01
Chr03	irgsp1_rep	CDS	36297676	36297921	.	-	0	Parent=Os03t0860050-01
Chr03	irgsp1_rep	three_prime_UTR	36297578	36297675	.	-	.	Parent=Os03t0860050-01
Chr03	irgsp1_rep	mRNA	36301491	36302407	.	-	.	ID=Os03t0860100-01;Name=Os03t0860100-01;Locus_id=Os03g0860100;RAP-DB Gene Symbol Synonym(s)=OsERF83;RAP-DB Gene Name Synonym(s)=ethylene response factor 83;CGSNL Gene Symbol=ERF83;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 83;Oryzabase Gene Symbol Synonym(s)=OsERF#083%2C OsERF083%2C OsERF83%2C AP2/EREBP#163%2C AP2/EREBP163;Oryzabase Gene Name Synonym(s)=ethylene response factor 83%2C APETALA2/ethylene-responsive element binding protein 163;Note=Ethylene response factor%2C Transcriptional activator%2C Positive regulation of disease resistance;Transcript_evidence=AK109390;ORF_evidence=Q10A97;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-binding transcription factor activity (GO:0003700);InterPro=AP2/ERF domain superfamily (IPR036955),DNA-binding domain superfamily (IPR016177),AP2/ERF domain (IPR001471);NIAS_FLcDNA=006-211-G07;Manual Curation=January 4%2C 2019;Literature_PMID=30590260;Oryzabase=10590;Expression=AK109390;TENOR=Os03t0860100-01;KEGG=Os03t0860100-01;Subcellular location=nucleus (GO:0005634)
Chr03	irgsp1_rep	five_prime_UTR	36302315	36302407	.	-	.	Parent=Os03t0860100-01
Chr03	irgsp1_rep	CDS	36301637	36302314	.	-	0	Parent=Os03t0860100-01
Chr03	irgsp1_rep	three_prime_UTR	36301491	36301636	.	-	.	Parent=Os03t0860100-01
Chr03	irgsp1_rep	mRNA	36318400	36319650	.	+	.	ID=Os03t0860600-01;Name=Os03t0860600-01;Locus_id=Os03g0860600;CGSNL Gene Symbol=2ODD20;CGSNL Gene Name=2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 20;Oryzabase Gene Symbol Synonym(s)=2-ODD20%2C Os2-ODD20%2C Os2ODD20;Oryzabase Gene Name Synonym(s)=2-oxoglutarate-dependent dioxygenase 20;Note=Similar to 2-oxoglutarate-dependent oxygenase.;Transcript_evidence=AK071828 (DDBJ%2C Best hit);ORF_evidence=Q10A95 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=J023118E08;Oryzabase=22623;Expression=AK071828;TENOR=Os03t0860600-01;KEGG=Os03t0860600-01
Chr03	irgsp1_rep	five_prime_UTR	36318400	36318417	.	+	.	Parent=Os03t0860600-01
Chr03	irgsp1_rep	CDS	36318418	36319503	.	+	0	Parent=Os03t0860600-01
Chr03	irgsp1_rep	three_prime_UTR	36319504	36319650	.	+	.	Parent=Os03t0860600-01
Chr03	irgsp1_rep	mRNA	36320679	36333253	.	-	.	ID=Os03t0860700-00;Name=Os03t0860700-00;Locus_id=Os03g0860700;Note=Hypothetical conserved gene.;Transcript_evidence=AF147739 (DDBJ);ORF_evidence=Q10A94 (UniProt);GO=Cellular Component: myosin complex (GO:0016459),Molecular Function: motor activity (GO:0003774),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=IQ motif%2C EF-hand binding site (IPR000048),Myosin head%2C motor domain (IPR001609);TENOR=Os03t0860700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	CDS	36333101	36333253	.	-	0	Parent=Os03t0860700-00
Chr03	irgsp1_rep	CDS	36332798	36332856	.	-	0	Parent=Os03t0860700-00
Chr03	irgsp1_rep	CDS	36332513	36332672	.	-	1	Parent=Os03t0860700-00
Chr03	irgsp1_rep	CDS	36331972	36332121	.	-	0	Parent=Os03t0860700-00
Chr03	irgsp1_rep	CDS	36331748	36331884	.	-	0	Parent=Os03t0860700-00
Chr03	irgsp1_rep	CDS	36331509	36331655	.	-	1	Parent=Os03t0860700-00
Chr03	irgsp1_rep	CDS	36331293	36331394	.	-	1	Parent=Os03t0860700-00
Chr03	irgsp1_rep	CDS	36330294	36330351	.	-	1	Parent=Os03t0860700-00
Chr03	irgsp1_rep	CDS	36330086	36330187	.	-	0	Parent=Os03t0860700-00
Chr03	irgsp1_rep	CDS	36329264	36329301	.	-	0	Parent=Os03t0860700-00
Chr03	irgsp1_rep	CDS	36329060	36329186	.	-	1	Parent=Os03t0860700-00
Chr03	irgsp1_rep	CDS	36328158	36328325	.	-	0	Parent=Os03t0860700-00
Chr03	irgsp1_rep	CDS	36327946	36328077	.	-	0	Parent=Os03t0860700-00
Chr03	irgsp1_rep	CDS	36327425	36327534	.	-	0	Parent=Os03t0860700-00
Chr03	irgsp1_rep	CDS	36327264	36327324	.	-	1	Parent=Os03t0860700-00
Chr03	irgsp1_rep	CDS	36326669	36326846	.	-	0	Parent=Os03t0860700-00
Chr03	irgsp1_rep	CDS	36326355	36326560	.	-	2	Parent=Os03t0860700-00
Chr03	irgsp1_rep	CDS	36326103	36326222	.	-	0	Parent=Os03t0860700-00
Chr03	irgsp1_rep	CDS	36325525	36325623	.	-	0	Parent=Os03t0860700-00
Chr03	irgsp1_rep	CDS	36324774	36324980	.	-	0	Parent=Os03t0860700-00
Chr03	irgsp1_rep	CDS	36324240	36324392	.	-	0	Parent=Os03t0860700-00
Chr03	irgsp1_rep	CDS	36323886	36323888	.	-	0	Parent=Os03t0860700-00
Chr03	irgsp1_rep	three_prime_UTR	36323515	36323885	.	-	.	Parent=Os03t0860700-00
Chr03	irgsp1_rep	three_prime_UTR	36323206	36323369	.	-	.	Parent=Os03t0860700-00
Chr03	irgsp1_rep	three_prime_UTR	36322458	36322661	.	-	.	Parent=Os03t0860700-00
Chr03	irgsp1_rep	three_prime_UTR	36321946	36322050	.	-	.	Parent=Os03t0860700-00
Chr03	irgsp1_rep	three_prime_UTR	36321797	36321867	.	-	.	Parent=Os03t0860700-00
Chr03	irgsp1_rep	three_prime_UTR	36321624	36321723	.	-	.	Parent=Os03t0860700-00
Chr03	irgsp1_rep	three_prime_UTR	36321106	36321162	.	-	.	Parent=Os03t0860700-00
Chr03	irgsp1_rep	three_prime_UTR	36320876	36320932	.	-	.	Parent=Os03t0860700-00
Chr03	irgsp1_rep	three_prime_UTR	36320679	36320774	.	-	.	Parent=Os03t0860700-00
Chr03	irgsp1_rep	mRNA	36333957	36338948	.	-	.	ID=Os03t0860801-00;Name=Os03t0860801-00;Locus_id=Os03g0860801;Note=Similar to Myosin head family protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10A94 (UniProt);GO=Cellular Component: myosin complex (GO:0016459),Molecular Function: motor activity (GO:0003774),Molecular Function: ATP binding (GO:0005524);InterPro=Myosin%2C N-terminal%2C SH3-like (IPR004009);TENOR=Os03t0860801-00;KEGG=Os03t0860801-00
Chr03	irgsp1_rep	CDS	36338883	36338948	.	-	0	Parent=Os03t0860801-00
Chr03	irgsp1_rep	CDS	36335190	36335462	.	-	0	Parent=Os03t0860801-00
Chr03	irgsp1_rep	CDS	36333957	36334037	.	-	0	Parent=Os03t0860801-00
Chr03	irgsp1_rep	mRNA	36340143	36346548	.	+	.	ID=Os03t0860900-01;Name=Os03t0860900-01;Locus_id=Os03g0860900;CGSNL Gene Symbol=THI30;CGSNL Gene Name=THIONIN 30;Oryzabase Gene Symbol Synonym(s)=OsTHI30%2C OsTHION30%2C THION30;Oryzabase Gene Name Synonym(s)=Thionin 30;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK111575 (DDBJ%2C Best hit);ORF_evidence=B6U290 (UniProt);GO=Molecular Function: single-stranded DNA binding (GO:0003697),Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),LisH dimerisation motif (IPR006594),Sequence-specific single-strand DNA-binding protein (IPR008116),WD40 repeat-like-containing domain (IPR011046),LisH dimerisation motif%2C subgroup (IPR013720),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J013079H15;Oryzabase=19270;Expression=AK111575;TENOR=Os03t0860900-01;KEGG=Os03t0860900-01
Chr03	irgsp1_rep	five_prime_UTR	36340143	36340329	.	+	.	Parent=Os03t0860900-01
Chr03	irgsp1_rep	CDS	36340330	36340361	.	+	0	Parent=Os03t0860900-01
Chr03	irgsp1_rep	CDS	36340490	36340587	.	+	1	Parent=Os03t0860900-01
Chr03	irgsp1_rep	CDS	36340672	36340796	.	+	2	Parent=Os03t0860900-01
Chr03	irgsp1_rep	CDS	36340882	36341129	.	+	0	Parent=Os03t0860900-01
Chr03	irgsp1_rep	CDS	36341205	36341274	.	+	1	Parent=Os03t0860900-01
Chr03	irgsp1_rep	CDS	36341356	36341461	.	+	0	Parent=Os03t0860900-01
Chr03	irgsp1_rep	CDS	36341763	36341812	.	+	2	Parent=Os03t0860900-01
Chr03	irgsp1_rep	CDS	36341900	36342100	.	+	0	Parent=Os03t0860900-01
Chr03	irgsp1_rep	CDS	36342665	36342742	.	+	0	Parent=Os03t0860900-01
Chr03	irgsp1_rep	CDS	36342838	36343047	.	+	0	Parent=Os03t0860900-01
Chr03	irgsp1_rep	CDS	36343129	36343255	.	+	0	Parent=Os03t0860900-01
Chr03	irgsp1_rep	CDS	36343334	36343443	.	+	2	Parent=Os03t0860900-01
Chr03	irgsp1_rep	CDS	36343817	36343966	.	+	0	Parent=Os03t0860900-01
Chr03	irgsp1_rep	CDS	36344865	36345020	.	+	0	Parent=Os03t0860900-01
Chr03	irgsp1_rep	CDS	36345107	36345235	.	+	0	Parent=Os03t0860900-01
Chr03	irgsp1_rep	CDS	36345316	36345513	.	+	0	Parent=Os03t0860900-01
Chr03	irgsp1_rep	CDS	36346013	36346156	.	+	0	Parent=Os03t0860900-01
Chr03	irgsp1_rep	three_prime_UTR	36346157	36346548	.	+	.	Parent=Os03t0860900-01
Chr03	irgsp1_rep	mRNA	36341680	36342107	.	-	.	ID=Os03t0860950-00;Name=Os03t0860950-00;Locus_id=Os03g0860950;Note=Non-protein coding transcript.;Transcript_evidence=AK360795 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0860950-00
Chr03	irgsp1_rep	exon	36341680	36342107	.	-	.	Parent=Os03t0860950-00
Chr03	irgsp1_rep	mRNA	36346310	36346953	.	-	.	ID=Os03t0861000-01;Name=Os03t0861000-01;Locus_id=Os03g0861000;Oryzabase Gene Symbol Synonym(s)=OsWD40-98;Note=Conserved hypothetical protein.;Transcript_evidence=AK121155 (DDBJ%2C Best hit),AK111687 (DDBJ%2C Best hit);ORF_evidence=A2XPC4 (UniProt);NIAS_FLcDNA=J023079A15,J023002L15;Oryzabase=10779;Expression=AK121155;TENOR=Os03t0861000-01;KEGG=Os03t0861000-01
Chr03	irgsp1_rep	five_prime_UTR	36346859	36346953	.	-	.	Parent=Os03t0861000-01
Chr03	irgsp1_rep	CDS	36346547	36346858	.	-	0	Parent=Os03t0861000-01
Chr03	irgsp1_rep	three_prime_UTR	36346310	36346546	.	-	.	Parent=Os03t0861000-01
Chr03	irgsp1_rep	mRNA	36347843	36358584	.	+	.	ID=Os03t0861100-01;Name=Os03t0861100-01;Locus_id=Os03g0861100;Note=Conserved hypothetical protein.;Transcript_evidence=AK100706 (DDBJ%2C Best hit);ORF_evidence=B9F809 (UniProt);NIAS_FLcDNA=J023115B06;Expression=AK100706;TENOR=Os03t0861100-01;KEGG=Os03t0861100-01
Chr03	irgsp1_rep	five_prime_UTR	36347843	36348111	.	+	.	Parent=Os03t0861100-01
Chr03	irgsp1_rep	CDS	36348112	36348170	.	+	0	Parent=Os03t0861100-01
Chr03	irgsp1_rep	CDS	36348554	36348733	.	+	1	Parent=Os03t0861100-01
Chr03	irgsp1_rep	CDS	36348822	36348942	.	+	1	Parent=Os03t0861100-01
Chr03	irgsp1_rep	CDS	36349041	36349080	.	+	0	Parent=Os03t0861100-01
Chr03	irgsp1_rep	CDS	36349625	36349677	.	+	2	Parent=Os03t0861100-01
Chr03	irgsp1_rep	CDS	36349751	36349812	.	+	0	Parent=Os03t0861100-01
Chr03	irgsp1_rep	CDS	36350168	36350320	.	+	1	Parent=Os03t0861100-01
Chr03	irgsp1_rep	CDS	36350763	36350974	.	+	1	Parent=Os03t0861100-01
Chr03	irgsp1_rep	CDS	36351294	36352786	.	+	2	Parent=Os03t0861100-01
Chr03	irgsp1_rep	CDS	36354374	36355297	.	+	0	Parent=Os03t0861100-01
Chr03	irgsp1_rep	CDS	36355548	36355908	.	+	0	Parent=Os03t0861100-01
Chr03	irgsp1_rep	CDS	36357928	36357981	.	+	2	Parent=Os03t0861100-01
Chr03	irgsp1_rep	CDS	36358266	36358324	.	+	2	Parent=Os03t0861100-01
Chr03	irgsp1_rep	three_prime_UTR	36358325	36358584	.	+	.	Parent=Os03t0861100-01
Chr03	irgsp1_rep	mRNA	36353713	36355194	.	-	.	ID=Os03t0861200-01;Name=Os03t0861200-01;Locus_id=Os03g0861200;Note=Hypothetical protein.;Transcript_evidence=AK073260 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033024I18;Expression=AK073260;TENOR=Os03t0861200-01;KEGG=Os03t0861200-01
Chr03	irgsp1_rep	five_prime_UTR	36355129	36355194	.	-	.	Parent=Os03t0861200-01
Chr03	irgsp1_rep	CDS	36354604	36355128	.	-	0	Parent=Os03t0861200-01
Chr03	irgsp1_rep	three_prime_UTR	36353713	36354603	.	-	.	Parent=Os03t0861200-01
Chr03	irgsp1_rep	mRNA	36360645	36361743	.	+	.	ID=Os03t0861300-01;Name=Os03t0861300-01;Locus_id=Os03g0861300;CGSNL Gene Symbol=PIP2%3B8;CGSNL Gene Name=PLASMA MEMBRANE INTRINSIC PROTEIN 2%3B8;Oryzabase Gene Symbol Synonym(s)=OsPIP2%3B8%2C PIP2.8%2C PIP2-8%2C OsPIP2-7;Oryzabase Gene Name Synonym(s)=Probable aquaporin PIP2.8%2C Probable aquaporin PIP2-8%2C Plasma membrane intrinsic protein 2-8;Note=Similar to Aquaporin.;Transcript_evidence=AK109024 (DDBJ%2C Best hit);ORF_evidence=Q8S4X4 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: water transport (GO:0006833),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Aquaporin (IPR012269),Major intrinsic protein%2C conserved site (IPR022357),Aquaporin-like (IPR023271);NIAS_FLcDNA=002-154-B04;Oryzabase=8516;Expression=AK109024;TENOR=Os03t0861300-01;KEGG=Os03t0861300-01
Chr03	irgsp1_rep	five_prime_UTR	36360645	36360732	.	+	.	Parent=Os03t0861300-01
Chr03	irgsp1_rep	CDS	36360733	36361575	.	+	0	Parent=Os03t0861300-01
Chr03	irgsp1_rep	three_prime_UTR	36361576	36361743	.	+	.	Parent=Os03t0861300-01
Chr03	irgsp1_rep	mRNA	36366368	36367651	.	-	.	ID=Os03t0861400-00;Name=Os03t0861400-00;Locus_id=Os03g0861400;CGSNL Gene Symbol=HMP23;CGSNL Gene Name=HEAVY METAL-ASSOCIATED PROTEIN 23;Oryzabase Gene Symbol Synonym(s)=OsHMP23;Oryzabase Gene Name Synonym(s)=Heavy metal-associated protein 23;Note=Hypothetical conserved gene.;Transcript_evidence=EU972095 (DDBJ);ORF_evidence=NP_001051981.1 (RefSeq);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);Oryzabase=23544;TENOR=Os03t0861400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr03	irgsp1_rep	five_prime_UTR	36367639	36367651	.	-	.	Parent=Os03t0861400-00
Chr03	irgsp1_rep	CDS	36367134	36367638	.	-	0	Parent=Os03t0861400-00
Chr03	irgsp1_rep	CDS	36366368	36367029	.	-	2	Parent=Os03t0861400-00
Chr03	irgsp1_rep	mRNA	36376422	36381537	.	-	.	ID=Os03t0861700-01;Name=Os03t0861700-01;Locus_id=Os03g0861700;Note=Rhodanese-like domain containing protein.;Transcript_evidence=AK066129 (DDBJ%2C Best hit);ORF_evidence=B8AP67 (UniProt);InterPro=Rhodanese-like (IPR001763);NIAS_FLcDNA=J013051M12;Expression=AK066129;TENOR=Os03t0861700-01;KEGG=Os03t0861700-01
Chr03	irgsp1_rep	five_prime_UTR	36381494	36381537	.	-	.	Parent=Os03t0861700-01
Chr03	irgsp1_rep	CDS	36381236	36381493	.	-	0	Parent=Os03t0861700-01
Chr03	irgsp1_rep	CDS	36381060	36381113	.	-	0	Parent=Os03t0861700-01
Chr03	irgsp1_rep	CDS	36380265	36380392	.	-	0	Parent=Os03t0861700-01
Chr03	irgsp1_rep	CDS	36378853	36378986	.	-	1	Parent=Os03t0861700-01
Chr03	irgsp1_rep	CDS	36377738	36377835	.	-	2	Parent=Os03t0861700-01
Chr03	irgsp1_rep	CDS	36377524	36377627	.	-	0	Parent=Os03t0861700-01
Chr03	irgsp1_rep	CDS	36377130	36377414	.	-	1	Parent=Os03t0861700-01
Chr03	irgsp1_rep	CDS	36376829	36376985	.	-	1	Parent=Os03t0861700-01
Chr03	irgsp1_rep	three_prime_UTR	36376422	36376828	.	-	.	Parent=Os03t0861700-01
Chr03	irgsp1_rep	mRNA	36376473	36377833	.	-	.	ID=Os03t0861700-02;Name=Os03t0861700-02;Locus_id=Os03g0861700;Note=Similar to predicted protein.;Transcript_evidence=AK105046 (DDBJ%2C Best hit);ORF_evidence=B8AP67 (UniProt);InterPro=Rhodanese-like (IPR001763);NIAS_FLcDNA=001-039-G09;Expression=AK105046;TENOR=Os03t0861700-02;KEGG=Os03t0861700-02
Chr03	irgsp1_rep	CDS	36377738	36377833	.	-	0	Parent=Os03t0861700-02
Chr03	irgsp1_rep	CDS	36377524	36377627	.	-	0	Parent=Os03t0861700-02
Chr03	irgsp1_rep	CDS	36377130	36377414	.	-	1	Parent=Os03t0861700-02
Chr03	irgsp1_rep	CDS	36376829	36376985	.	-	1	Parent=Os03t0861700-02
Chr03	irgsp1_rep	three_prime_UTR	36376473	36376828	.	-	.	Parent=Os03t0861700-02
Chr03	irgsp1_rep	mRNA	36381746	36384498	.	+	.	ID=Os03t0861800-01;Name=Os03t0861800-01;Locus_id=Os03g0861800;Oryzabase Gene Symbol Synonym(s)=OsFbox178%2C Os_F0705;Oryzabase Gene Name Synonym(s)=F-box protein 178;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK068434 (DDBJ%2C Best hit);ORF_evidence=Q10A87 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013154L15;Oryzabase=16967;Expression=AK068434;TENOR=Os03t0861800-01;KEGG=Os03t0861800-01
Chr03	irgsp1_rep	five_prime_UTR	36381746	36381799	.	+	.	Parent=Os03t0861800-01
Chr03	irgsp1_rep	CDS	36381800	36381962	.	+	0	Parent=Os03t0861800-01
Chr03	irgsp1_rep	CDS	36382139	36382528	.	+	2	Parent=Os03t0861800-01
Chr03	irgsp1_rep	CDS	36382604	36382779	.	+	2	Parent=Os03t0861800-01
Chr03	irgsp1_rep	CDS	36383767	36383885	.	+	0	Parent=Os03t0861800-01
Chr03	irgsp1_rep	CDS	36383990	36384092	.	+	1	Parent=Os03t0861800-01
Chr03	irgsp1_rep	three_prime_UTR	36384093	36384498	.	+	.	Parent=Os03t0861800-01
Chr03	irgsp1_rep	mRNA	36381753	36384489	.	+	.	ID=Os03t0861800-02;Name=Os03t0861800-02;Locus_id=Os03g0861800;Oryzabase Gene Symbol Synonym(s)=OsFbox178%2C Os_F0705;Oryzabase Gene Name Synonym(s)=F-box protein 178;Note=Hypothetical conserved gene.;Transcript_evidence=AK109388 (DDBJ%2C Best hit);ORF_evidence=Q7Y1D9 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=006-211-E04;Oryzabase=16967;Expression=AK109388;TENOR=Os03t0861800-02;KEGG=Os03t0861800-02
Chr03	irgsp1_rep	five_prime_UTR	36381753	36381799	.	+	.	Parent=Os03t0861800-02
Chr03	irgsp1_rep	CDS	36381800	36381962	.	+	0	Parent=Os03t0861800-02
Chr03	irgsp1_rep	CDS	36382139	36382779	.	+	2	Parent=Os03t0861800-02
Chr03	irgsp1_rep	CDS	36383767	36383885	.	+	0	Parent=Os03t0861800-02
Chr03	irgsp1_rep	CDS	36383970	36384255	.	+	1	Parent=Os03t0861800-02
Chr03	irgsp1_rep	three_prime_UTR	36384256	36384489	.	+	.	Parent=Os03t0861800-02
Chr03	irgsp1_rep	mRNA	36384914	36390090	.	+	.	ID=Os03t0861900-01;Name=Os03t0861900-01;Locus_id=Os03g0861900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK066683 (DDBJ%2C Best hit);ORF_evidence=Q7Y1D6 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013072G24;Expression=AK066683;TENOR=Os03t0861900-01;KEGG=Os03t0861900-01
Chr03	irgsp1_rep	five_prime_UTR	36384914	36384957	.	+	.	Parent=Os03t0861900-01
Chr03	irgsp1_rep	CDS	36384958	36386913	.	+	0	Parent=Os03t0861900-01
Chr03	irgsp1_rep	three_prime_UTR	36386914	36387086	.	+	.	Parent=Os03t0861900-01
Chr03	irgsp1_rep	three_prime_UTR	36387916	36388043	.	+	.	Parent=Os03t0861900-01
Chr03	irgsp1_rep	three_prime_UTR	36389237	36389312	.	+	.	Parent=Os03t0861900-01
Chr03	irgsp1_rep	three_prime_UTR	36389449	36389761	.	+	.	Parent=Os03t0861900-01
Chr03	irgsp1_rep	three_prime_UTR	36389841	36390090	.	+	.	Parent=Os03t0861900-01
Chr03	irgsp1_rep	mRNA	36387772	36391619	.	-	.	ID=Os03t0862000-01;Name=Os03t0862000-01;Locus_id=Os03g0862000;Note=Conserved hypothetical protein.;Transcript_evidence=AK119361 (DDBJ%2C Best hit);ORF_evidence=B8AP70 (UniProt);NIAS_FLcDNA=001-131-G07;Expression=AK119361;TENOR=Os03t0862000-01;KEGG=Os03t0862000-01
Chr03	irgsp1_rep	five_prime_UTR	36391470	36391619	.	-	.	Parent=Os03t0862000-01
Chr03	irgsp1_rep	CDS	36390204	36391469	.	-	0	Parent=Os03t0862000-01
Chr03	irgsp1_rep	three_prime_UTR	36389191	36390203	.	-	.	Parent=Os03t0862000-01
Chr03	irgsp1_rep	three_prime_UTR	36388924	36389038	.	-	.	Parent=Os03t0862000-01
Chr03	irgsp1_rep	three_prime_UTR	36388761	36388842	.	-	.	Parent=Os03t0862000-01
Chr03	irgsp1_rep	three_prime_UTR	36388504	36388555	.	-	.	Parent=Os03t0862000-01
Chr03	irgsp1_rep	three_prime_UTR	36388354	36388408	.	-	.	Parent=Os03t0862000-01
Chr03	irgsp1_rep	three_prime_UTR	36387772	36388272	.	-	.	Parent=Os03t0862000-01
Chr03	irgsp1_rep	mRNA	36394773	36401591	.	+	.	ID=Os03t0862100-01;Name=Os03t0862100-01;Locus_id=Os03g0862100;Note=Conserved hypothetical protein.;Transcript_evidence=AK066909 (DDBJ%2C Best hit);ORF_evidence=Q7Y1D0 (UniProt);NIAS_FLcDNA=J013091E19;Expression=AK066909;TENOR=Os03t0862100-01;KEGG=Os03t0862100-01
Chr03	irgsp1_rep	five_prime_UTR	36394773	36394908	.	+	.	Parent=Os03t0862100-01
Chr03	irgsp1_rep	CDS	36394909	36395125	.	+	0	Parent=Os03t0862100-01
Chr03	irgsp1_rep	CDS	36395258	36395344	.	+	2	Parent=Os03t0862100-01
Chr03	irgsp1_rep	CDS	36395599	36396539	.	+	2	Parent=Os03t0862100-01
Chr03	irgsp1_rep	CDS	36397054	36397142	.	+	0	Parent=Os03t0862100-01
Chr03	irgsp1_rep	CDS	36398789	36398892	.	+	1	Parent=Os03t0862100-01
Chr03	irgsp1_rep	CDS	36398993	36399092	.	+	2	Parent=Os03t0862100-01
Chr03	irgsp1_rep	CDS	36399210	36399285	.	+	1	Parent=Os03t0862100-01
Chr03	irgsp1_rep	CDS	36399370	36399484	.	+	0	Parent=Os03t0862100-01
Chr03	irgsp1_rep	CDS	36399569	36400100	.	+	2	Parent=Os03t0862100-01
Chr03	irgsp1_rep	CDS	36400846	36401341	.	+	1	Parent=Os03t0862100-01
Chr03	irgsp1_rep	three_prime_UTR	36401342	36401591	.	+	.	Parent=Os03t0862100-01
Chr03	irgsp1_rep	mRNA	36399208	36401341	.	-	.	ID=Os03t0862150-00;Name=Os03t0862150-00;Locus_id=Os03g0862150;Note=Non-protein coding transcript.;Transcript_evidence=BT016860 (DDBJ);ORF_evidence=NONE;TENOR=Os03t0862150-00
Chr03	irgsp1_rep	exon	36400828	36401341	.	-	.	Parent=Os03t0862150-00
Chr03	irgsp1_rep	exon	36399553	36400084	.	-	.	Parent=Os03t0862150-00
Chr03	irgsp1_rep	exon	36399357	36399472	.	-	.	Parent=Os03t0862150-00
Chr03	irgsp1_rep	exon	36399208	36399268	.	-	.	Parent=Os03t0862150-00
Chr03	irgsp1_rep	mRNA	36402736	36403145	.	-	.	ID=Os03t0862200-01;Name=Os03t0862200-01;Locus_id=Os03g0862200;Note=Hypothetical conserved gene.;Transcript_evidence=AK243292 (DDBJ%2C Best hit);ORF_evidence=Q10A78 (UniProt);NIAS_FLcDNA=J100053E16;TENOR=Os03t0862200-01;KEGG=Os03t0862200-01
Chr03	irgsp1_rep	five_prime_UTR	36403065	36403145	.	-	.	Parent=Os03t0862200-01
Chr03	irgsp1_rep	CDS	36402888	36403064	.	-	0	Parent=Os03t0862200-01
Chr03	irgsp1_rep	three_prime_UTR	36402736	36402887	.	-	.	Parent=Os03t0862200-01
Chr03	irgsp1_rep	mRNA	36403082	36413292	.	+	.	ID=Os03t0862300-00;Name=Os03t0862300-00;Locus_id=Os03g0862300;Note=Non-protein coding transcript.;Transcript_evidence=tplb0029c11 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os03t0862300-00
Chr03	irgsp1_rep	exon	36403082	36403255	.	+	.	Parent=Os03t0862300-00
Chr03	irgsp1_rep	exon	36403351	36403448	.	+	.	Parent=Os03t0862300-00
Chr03	irgsp1_rep	exon	36403544	36403640	.	+	.	Parent=Os03t0862300-00
Chr03	irgsp1_rep	exon	36403719	36403796	.	+	.	Parent=Os03t0862300-00
Chr03	irgsp1_rep	exon	36404137	36404349	.	+	.	Parent=Os03t0862300-00
Chr03	irgsp1_rep	exon	36404448	36404614	.	+	.	Parent=Os03t0862300-00
Chr03	irgsp1_rep	exon	36404747	36404830	.	+	.	Parent=Os03t0862300-00
Chr03	irgsp1_rep	exon	36404932	36405055	.	+	.	Parent=Os03t0862300-00
Chr03	irgsp1_rep	exon	36412652	36413292	.	+	.	Parent=Os03t0862300-00
Chr04	irgsp1_rep	mRNA	58899	61464	.	-	.	ID=Os04t0100150-00;Name=Os04t0100150-00;Locus_id=Os04g0100150;Note=Hypothetical gene.;Transcript_evidence=EU957140 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0100150-00;KEGG=Os04t0100150-00
Chr04	irgsp1_rep	five_prime_UTR	60941	61464	.	-	.	Parent=Os04t0100150-00
Chr04	irgsp1_rep	CDS	60937	60940	.	-	0	Parent=Os04t0100150-00
Chr04	irgsp1_rep	CDS	60415	60863	.	-	2	Parent=Os04t0100150-00
Chr04	irgsp1_rep	CDS	59629	59868	.	-	0	Parent=Os04t0100150-00
Chr04	irgsp1_rep	three_prime_UTR	59278	59628	.	-	.	Parent=Os04t0100150-00
Chr04	irgsp1_rep	three_prime_UTR	58899	59157	.	-	.	Parent=Os04t0100150-00
Chr04	irgsp1_rep	mRNA	58789	61561	.	+	.	ID=Os04t0100300-00;Name=Os04t0100300-00;Locus_id=Os04g0100300;Note=Similar to Formin-like protein 18.;Transcript_evidence=AK356871 (DDBJ);ORF_evidence=Q6MWG9 (UniProt);GO=Biological Process: cellular component organization (GO:0016043),Biological Process: actin cytoskeleton organization (GO:0030036),Molecular Function: actin binding (GO:0003779);InterPro=Actin-binding FH2/DRF autoregulatory (IPR003104),Actin-binding FH2 (IPR015425);TENOR=Os04t0100300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	58789	59951	.	+	0	Parent=Os04t0100300-00
Chr04	irgsp1_rep	CDS	60080	60276	.	+	1	Parent=Os04t0100300-00
Chr04	irgsp1_rep	CDS	60356	60827	.	+	2	Parent=Os04t0100300-00
Chr04	irgsp1_rep	CDS	60897	61536	.	+	1	Parent=Os04t0100300-00
Chr04	irgsp1_rep	three_prime_UTR	61537	61561	.	+	.	Parent=Os04t0100300-00
Chr04	irgsp1_rep	mRNA	87621	87839	.	+	.	ID=Os04t0101100-00;Name=Os04t0101100-00;Locus_id=Os04g0101100;Note=Similar to H0102C09.3 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q25AL3 (UniProt);GO=Cellular Component: nucleus (GO:0005634);InterPro=MRG (IPR008676);TENOR=Os04t0101100-00
Chr04	irgsp1_rep	CDS	87621	87839	.	+	0	Parent=Os04t0101100-00
Chr04	irgsp1_rep	mRNA	89024	97611	.	+	.	ID=Os04t0101300-00;Name=Os04t0101300-00;Locus_id=Os04g0101300;Oryzabase Gene Symbol Synonym(s)=MRG701%2C OsMRG701;Oryzabase Gene Name Synonym(s)=MORF-RELATED GENE701%2C MORF-RELATED GENE 701;Note=Similar to H0102C09.3 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q25AL3 (UniProt);GO=Cellular Component: nucleus (GO:0005634);InterPro=MRG (IPR008676),Chromo domain-like (IPR016197);Oryzabase=22349;TENOR=Os04t0101300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	89024	89158	.	+	0	Parent=Os04t0101300-00
Chr04	irgsp1_rep	CDS	89339	89416	.	+	0	Parent=Os04t0101300-00
Chr04	irgsp1_rep	CDS	90485	90848	.	+	0	Parent=Os04t0101300-00
Chr04	irgsp1_rep	CDS	91859	91897	.	+	2	Parent=Os04t0101300-00
Chr04	irgsp1_rep	CDS	92021	92061	.	+	2	Parent=Os04t0101300-00
Chr04	irgsp1_rep	CDS	92718	92822	.	+	0	Parent=Os04t0101300-00
Chr04	irgsp1_rep	CDS	93504	93583	.	+	0	Parent=Os04t0101300-00
Chr04	irgsp1_rep	CDS	96204	96373	.	+	1	Parent=Os04t0101300-00
Chr04	irgsp1_rep	CDS	97124	97208	.	+	2	Parent=Os04t0101300-00
Chr04	irgsp1_rep	CDS	97527	97611	.	+	1	Parent=Os04t0101300-00
Chr04	irgsp1_rep	mRNA	99797	101630	.	-	.	ID=Os04t0101400-01;Name=Os04t0101400-01;Locus_id=Os04g0101400;RAP-DB Gene Symbol Synonym(s)=CYP93G1%2C OsCYP93G1%2C OsFNSII%2C FNSII;RAP-DB Gene Name Synonym(s)=P-450 93G1%2C CytoChrome P450 93G1%2C Flavone Synthase II;CGSNL Gene Symbol=CYP93G1;CGSNL Gene Name=P-450 93G1;Oryzabase Gene Symbol Synonym(s)=OsCYP93G1%2C OsFNSII%2C FNSII;Oryzabase Gene Name Synonym(s)=CytoChrome P450 93G1%2C Flavone Synthase II;Note=Flavone synthase II (FNSII)%2C Biosynthesis of tricin O-linked conjugates;Transcript_evidence=AK100972;ORF_evidence=Q0JFI2;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J023143C19,001-202-B05;Manual Curation=August 10%2C 2014;Literature_PMID=24843076;Oryzabase=20512;TENOR=Os04t0101400-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	101623	101630	.	-	.	Parent=Os04t0101400-01
Chr04	irgsp1_rep	CDS	100702	101622	.	-	0	Parent=Os04t0101400-01
Chr04	irgsp1_rep	CDS	99974	100603	.	-	0	Parent=Os04t0101400-01
Chr04	irgsp1_rep	three_prime_UTR	99797	99973	.	-	.	Parent=Os04t0101400-01
Chr04	irgsp1_rep	mRNA	100082	101499	.	+	.	ID=Os04t0101550-00;Name=Os04t0101550-00;Locus_id=Os04g0101550;Note=Hypothetical protein.;Transcript_evidence=tplb0033d13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0101550-00
Chr04	irgsp1_rep	CDS	100082	100615	.	+	0	Parent=Os04t0101550-00
Chr04	irgsp1_rep	CDS	100735	101475	.	+	0	Parent=Os04t0101550-00
Chr04	irgsp1_rep	three_prime_UTR	101476	101499	.	+	.	Parent=Os04t0101550-00
Chr04	irgsp1_rep	mRNA	115620	119698	.	+	.	ID=Os04t0101700-01;Name=Os04t0101700-01;Locus_id=Os04g0101700;Note=Engulfment and cell motility%2C ELM domain containing protein.;Transcript_evidence=AK069225 (DDBJ%2C Best hit);ORF_evidence=Q25AL1 (UniProt);GO=Biological Process: phagocytosis (GO:0006909),Cellular Component: cytoskeleton (GO:0005856);InterPro=Engulfment/cell motility%2C ELMO (IPR006816);NIAS_FLcDNA=J023013E16;Expression=AK069225;TENOR=Os04t0101700-01;KEGG=Os04t0101700-01
Chr04	irgsp1_rep	five_prime_UTR	115620	116018	.	+	.	Parent=Os04t0101700-01
Chr04	irgsp1_rep	five_prime_UTR	116509	116516	.	+	.	Parent=Os04t0101700-01
Chr04	irgsp1_rep	CDS	116517	116615	.	+	0	Parent=Os04t0101700-01
Chr04	irgsp1_rep	CDS	116898	116966	.	+	0	Parent=Os04t0101700-01
Chr04	irgsp1_rep	CDS	117050	117165	.	+	0	Parent=Os04t0101700-01
Chr04	irgsp1_rep	CDS	117282	117336	.	+	1	Parent=Os04t0101700-01
Chr04	irgsp1_rep	CDS	117424	117544	.	+	0	Parent=Os04t0101700-01
Chr04	irgsp1_rep	CDS	118821	118868	.	+	2	Parent=Os04t0101700-01
Chr04	irgsp1_rep	CDS	118997	119091	.	+	2	Parent=Os04t0101700-01
Chr04	irgsp1_rep	CDS	119445	119546	.	+	0	Parent=Os04t0101700-01
Chr04	irgsp1_rep	three_prime_UTR	119547	119698	.	+	.	Parent=Os04t0101700-01
Chr04	irgsp1_rep	mRNA	121735	125238	.	-	.	ID=Os04t0101800-01;Name=Os04t0101800-01;Locus_id=Os04g0101800;RAP-DB Gene Symbol Synonym(s)=SOR1;RAP-DB Gene Name Synonym(s)=soil-surface rooting 1;CGSNL Gene Symbol=SOR1;CGSNL Gene Name=SOIL-SURFACE ROOTING 1;Oryzabase Gene Symbol Synonym(s)=MHZ2%2C OsMHZ2%2C OsSOR1;Oryzabase Gene Name Synonym(s)=soil-surface rooting 1%2C maohuzi 2;Note=RING finger E3 ubiquitin ligase%2C Regulation of root-specific ethylene response;Transcript_evidence=AK243021;ORF_evidence=A0A0P0W5W4;InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),von Willebrand factor A-like domain superfamily (IPR036465),Zinc finger%2C RING-type (IPR001841),von Willebrand factor%2C type A (IPR002035);NIAS_FLcDNA=J090099M14;Manual Curation=April 16%2C 2018;Literature_PMID=29632179,24280269;Oryzabase=19622;TENOR=Os04t0101800-01;KEGG=Os04t0101800-01
Chr04	irgsp1_rep	five_prime_UTR	125112	125238	.	-	.	Parent=Os04t0101800-01
Chr04	irgsp1_rep	CDS	124749	125111	.	-	0	Parent=Os04t0101800-01
Chr04	irgsp1_rep	CDS	121936	123642	.	-	0	Parent=Os04t0101800-01
Chr04	irgsp1_rep	three_prime_UTR	121735	121935	.	-	.	Parent=Os04t0101800-01
Chr04	irgsp1_rep	mRNA	177466	182211	.	+	.	ID=Os04t0102500-01;Name=Os04t0102500-01;Locus_id=Os04g0102500;Note=Similar to OSIGBa0123D13.3 protein.;Transcript_evidence=AK242581 (DDBJ%2C Best hit);ORF_evidence=Q01N46 (UniProt);InterPro=Histidine phosphatase superfamily%2C clade-1 (IPR013078);NIAS_FLcDNA=J090010I24;TENOR=Os04t0102500-01;KEGG=Os04t0102500-01
Chr04	irgsp1_rep	five_prime_UTR	177466	177882	.	+	.	Parent=Os04t0102500-01
Chr04	irgsp1_rep	CDS	177883	177945	.	+	0	Parent=Os04t0102500-01
Chr04	irgsp1_rep	CDS	178050	178157	.	+	0	Parent=Os04t0102500-01
Chr04	irgsp1_rep	CDS	179122	179201	.	+	0	Parent=Os04t0102500-01
Chr04	irgsp1_rep	CDS	179957	180119	.	+	1	Parent=Os04t0102500-01
Chr04	irgsp1_rep	CDS	180385	180458	.	+	0	Parent=Os04t0102500-01
Chr04	irgsp1_rep	CDS	180571	180660	.	+	1	Parent=Os04t0102500-01
Chr04	irgsp1_rep	CDS	181216	181335	.	+	1	Parent=Os04t0102500-01
Chr04	irgsp1_rep	CDS	181664	181708	.	+	1	Parent=Os04t0102500-01
Chr04	irgsp1_rep	CDS	181812	181896	.	+	1	Parent=Os04t0102500-01
Chr04	irgsp1_rep	three_prime_UTR	181897	182211	.	+	.	Parent=Os04t0102500-01
Chr04	irgsp1_rep	mRNA	182523	186397	.	-	.	ID=Os04t0102600-01;Name=Os04t0102600-01;Locus_id=Os04g0102600;Note=Similar to Splicing factor 3B subunit 2 (Spliceosome associated protein 145) (SAP 145) (SF3b150) (Pre-mRNA splicing factor SF3b 145 kDa subunit).;Transcript_evidence=AK104417 (DDBJ%2C Best hit),AK070814 (DDBJ%2C Best hit);ORF_evidence=Q01N45 (UniProt);InterPro=Peptidase S24/S26A/S26B/S26C%2C beta-ribbon domain (IPR011056),Peptidase S24/S26A/S26B/S26C (IPR015927);NIAS_FLcDNA=006-205-A03,J023072A16;Expression=AK104417;TENOR=Os04t0102600-01;KEGG=Os04t0102600-01
Chr04	irgsp1_rep	five_prime_UTR	186144	186397	.	-	.	Parent=Os04t0102600-01
Chr04	irgsp1_rep	CDS	186072	186143	.	-	0	Parent=Os04t0102600-01
Chr04	irgsp1_rep	CDS	185573	185748	.	-	0	Parent=Os04t0102600-01
Chr04	irgsp1_rep	CDS	183273	183456	.	-	1	Parent=Os04t0102600-01
Chr04	irgsp1_rep	CDS	182858	182964	.	-	0	Parent=Os04t0102600-01
Chr04	irgsp1_rep	CDS	182680	182761	.	-	1	Parent=Os04t0102600-01
Chr04	irgsp1_rep	three_prime_UTR	182523	182679	.	-	.	Parent=Os04t0102600-01
Chr04	irgsp1_rep	mRNA	187899	196971	.	-	.	ID=Os04t0102700-01;Name=Os04t0102700-01;Locus_id=Os04g0102700;Oryzabase Gene Symbol Synonym(s)=FAAH;Oryzabase Gene Name Synonym(s)=Fatty acid amide hydrolase%2C Os NAE AHase%2C N-acylethanolamine amidohydrolase;Note=Similar to N-acylethanolamine amidohydrolase.;Transcript_evidence=AK101740 (DDBJ%2C Best hit);ORF_evidence=Q01N44 (UniProt);GO=Molecular Function: carbon-nitrogen ligase activity%2C with glutamine as amido-N-donor (GO:0016884);InterPro=Amidase (IPR000120),Amidase%2C conserved site (IPR020556),Amidase signature domain (IPR023631);NIAS_FLcDNA=J033061L19;Oryzabase=14675;Expression=AK101740;TENOR=Os04t0102700-01;KEGG=Os04t0102700-01
Chr04	irgsp1_rep	five_prime_UTR	196853	196971	.	-	.	Parent=Os04t0102700-01
Chr04	irgsp1_rep	CDS	196661	196852	.	-	0	Parent=Os04t0102700-01
Chr04	irgsp1_rep	CDS	196499	196559	.	-	0	Parent=Os04t0102700-01
Chr04	irgsp1_rep	CDS	194193	194383	.	-	2	Parent=Os04t0102700-01
Chr04	irgsp1_rep	CDS	193971	194100	.	-	0	Parent=Os04t0102700-01
Chr04	irgsp1_rep	CDS	193755	193832	.	-	2	Parent=Os04t0102700-01
Chr04	irgsp1_rep	CDS	193516	193663	.	-	2	Parent=Os04t0102700-01
Chr04	irgsp1_rep	CDS	193028	193140	.	-	1	Parent=Os04t0102700-01
Chr04	irgsp1_rep	CDS	192871	192946	.	-	2	Parent=Os04t0102700-01
Chr04	irgsp1_rep	CDS	192508	192579	.	-	1	Parent=Os04t0102700-01
Chr04	irgsp1_rep	CDS	192289	192340	.	-	1	Parent=Os04t0102700-01
Chr04	irgsp1_rep	CDS	191683	191763	.	-	0	Parent=Os04t0102700-01
Chr04	irgsp1_rep	CDS	191530	191613	.	-	0	Parent=Os04t0102700-01
Chr04	irgsp1_rep	CDS	190949	191052	.	-	0	Parent=Os04t0102700-01
Chr04	irgsp1_rep	CDS	190731	190823	.	-	1	Parent=Os04t0102700-01
Chr04	irgsp1_rep	CDS	190472	190540	.	-	1	Parent=Os04t0102700-01
Chr04	irgsp1_rep	CDS	189641	189705	.	-	1	Parent=Os04t0102700-01
Chr04	irgsp1_rep	CDS	188964	189025	.	-	2	Parent=Os04t0102700-01
Chr04	irgsp1_rep	CDS	188611	188706	.	-	0	Parent=Os04t0102700-01
Chr04	irgsp1_rep	CDS	188039	188098	.	-	0	Parent=Os04t0102700-01
Chr04	irgsp1_rep	three_prime_UTR	187899	188038	.	-	.	Parent=Os04t0102700-01
Chr04	irgsp1_rep	mRNA	216134	219439	.	+	.	ID=Os04t0103100-01;Name=Os04t0103100-01;Locus_id=Os04g0103100;Oryzabase Gene Symbol Synonym(s)=OsGT43H;Oryzabase Gene Name Synonym(s)=glycosyltransferase family GT43 member H;Note=Glycosyl transferase%2C family 43 protein.;Transcript_evidence=AK070873 (DDBJ%2C Best hit);ORF_evidence=Q01N36 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity (GO:0015018);InterPro=Glycosyl transferase%2C family 43 (IPR005027);NIAS_FLcDNA=J023071K13;Oryzabase=15253;Expression=AK070873;TENOR=Os04t0103100-01;KEGG=Os04t0103100-01
Chr04	irgsp1_rep	five_prime_UTR	216134	216340	.	+	.	Parent=Os04t0103100-01
Chr04	irgsp1_rep	CDS	216341	217065	.	+	0	Parent=Os04t0103100-01
Chr04	irgsp1_rep	CDS	217395	217644	.	+	1	Parent=Os04t0103100-01
Chr04	irgsp1_rep	CDS	218019	218189	.	+	0	Parent=Os04t0103100-01
Chr04	irgsp1_rep	three_prime_UTR	218190	218231	.	+	.	Parent=Os04t0103100-01
Chr04	irgsp1_rep	three_prime_UTR	218971	219439	.	+	.	Parent=Os04t0103100-01
Chr04	irgsp1_rep	mRNA	219768	222818	.	-	.	ID=Os04t0103200-01;Name=Os04t0103200-01;Locus_id=Os04g0103200;CGSNL Gene Symbol=EIF3M;CGSNL Gene Name=EUKARYOTIC INITIATION FACTOR 3M;Oryzabase Gene Symbol Synonym(s)=eIF-3m%2C OseIF3m;Oryzabase Gene Name Synonym(s)="eukaryotic translation initiation factor 3%2C subunit m";Note=Proteasome component region PCI domain containing protein.;Transcript_evidence=AK066032 (DDBJ%2C Best hit);ORF_evidence=Q01N35 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Proteasome component (PCI) domain (IPR000717);NIAS_FLcDNA=J013046D12;Oryzabase=21031;TENOR=Os04t0103200-01
Chr04	irgsp1_rep	five_prime_UTR	222731	222818	.	-	.	Parent=Os04t0103200-01
Chr04	irgsp1_rep	CDS	222496	222730	.	-	0	Parent=Os04t0103200-01
Chr04	irgsp1_rep	CDS	222279	222417	.	-	2	Parent=Os04t0103200-01
Chr04	irgsp1_rep	CDS	221943	222155	.	-	1	Parent=Os04t0103200-01
Chr04	irgsp1_rep	CDS	221707	221851	.	-	1	Parent=Os04t0103200-01
Chr04	irgsp1_rep	CDS	220993	221143	.	-	0	Parent=Os04t0103200-01
Chr04	irgsp1_rep	CDS	220778	220887	.	-	2	Parent=Os04t0103200-01
Chr04	irgsp1_rep	CDS	220598	220695	.	-	0	Parent=Os04t0103200-01
Chr04	irgsp1_rep	CDS	220399	220468	.	-	1	Parent=Os04t0103200-01
Chr04	irgsp1_rep	CDS	220130	220219	.	-	0	Parent=Os04t0103200-01
Chr04	irgsp1_rep	three_prime_UTR	219768	220129	.	-	.	Parent=Os04t0103200-01
Chr04	irgsp1_rep	mRNA	219782	222781	.	-	.	ID=Os04t0103200-02;Name=Os04t0103200-02;Locus_id=Os04g0103200;CGSNL Gene Symbol=EIF3M;CGSNL Gene Name=EUKARYOTIC INITIATION FACTOR 3M;Oryzabase Gene Symbol Synonym(s)=eIF-3m%2C OseIF3m;Oryzabase Gene Name Synonym(s)="eukaryotic translation initiation factor 3%2C subunit m";Note=Proteasome component region PCI domain containing protein.;Transcript_evidence=AK060850 (DDBJ%2C Best hit);ORF_evidence=Q01N35 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Proteasome component (PCI) domain (IPR000717);NIAS_FLcDNA=001-034-E07;Oryzabase=21031;TENOR=Os04t0103200-02
Chr04	irgsp1_rep	five_prime_UTR	222731	222781	.	-	.	Parent=Os04t0103200-02
Chr04	irgsp1_rep	CDS	222496	222730	.	-	0	Parent=Os04t0103200-02
Chr04	irgsp1_rep	CDS	222279	222417	.	-	2	Parent=Os04t0103200-02
Chr04	irgsp1_rep	CDS	221943	222155	.	-	1	Parent=Os04t0103200-02
Chr04	irgsp1_rep	CDS	221707	221851	.	-	1	Parent=Os04t0103200-02
Chr04	irgsp1_rep	CDS	220993	221143	.	-	0	Parent=Os04t0103200-02
Chr04	irgsp1_rep	CDS	220778	220887	.	-	2	Parent=Os04t0103200-02
Chr04	irgsp1_rep	CDS	220598	220695	.	-	0	Parent=Os04t0103200-02
Chr04	irgsp1_rep	CDS	220399	220468	.	-	1	Parent=Os04t0103200-02
Chr04	irgsp1_rep	CDS	220130	220219	.	-	0	Parent=Os04t0103200-02
Chr04	irgsp1_rep	three_prime_UTR	219782	220129	.	-	.	Parent=Os04t0103200-02
Chr04	irgsp1_rep	mRNA	226927	230020	.	-	.	ID=Os04t0103300-01;Name=Os04t0103300-01;Locus_id=Os04g0103300;Oryzabase Gene Symbol Synonym(s)=OsRhmbd10%2C RHMBD10;Oryzabase Gene Name Synonym(s)=Rhomboid 10%2C RHOMBOID 10;Note=Protein of unknown function DUF1751%2C integral membrane%2C eukaryotic domain containing protein.;Transcript_evidence=AK073274 (DDBJ%2C Best hit);ORF_evidence=Q01N34 (UniProt);InterPro=Protein of unknown function DUF1751%2C integral membrane%2C eukaryotic (IPR013861);NIAS_FLcDNA=J033029B20;Oryzabase=20066;TENOR=Os04t0103300-01
Chr04	irgsp1_rep	five_prime_UTR	229750	230020	.	-	.	Parent=Os04t0103300-01
Chr04	irgsp1_rep	CDS	229666	229749	.	-	0	Parent=Os04t0103300-01
Chr04	irgsp1_rep	CDS	229332	229450	.	-	0	Parent=Os04t0103300-01
Chr04	irgsp1_rep	CDS	228965	229025	.	-	1	Parent=Os04t0103300-01
Chr04	irgsp1_rep	CDS	228498	228664	.	-	0	Parent=Os04t0103300-01
Chr04	irgsp1_rep	CDS	228000	228114	.	-	1	Parent=Os04t0103300-01
Chr04	irgsp1_rep	CDS	227686	227888	.	-	0	Parent=Os04t0103300-01
Chr04	irgsp1_rep	CDS	227481	227591	.	-	1	Parent=Os04t0103300-01
Chr04	irgsp1_rep	CDS	227203	227299	.	-	1	Parent=Os04t0103300-01
Chr04	irgsp1_rep	three_prime_UTR	226927	227202	.	-	.	Parent=Os04t0103300-01
Chr04	irgsp1_rep	mRNA	227088	229835	.	-	.	ID=Os04t0103300-02;Name=Os04t0103300-02;Locus_id=Os04g0103300;Oryzabase Gene Symbol Synonym(s)=OsRhmbd10%2C RHMBD10;Oryzabase Gene Name Synonym(s)=Rhomboid 10%2C RHOMBOID 10;Note=Protein of unknown function DUF1751%2C integral membrane%2C eukaryotic domain containing protein.;Transcript_evidence=AK066103 (DDBJ%2C Best hit);ORF_evidence=Q01N34 (UniProt);InterPro=Protein of unknown function DUF1751%2C integral membrane%2C eukaryotic (IPR013861);NIAS_FLcDNA=J013051M22;Oryzabase=20066;Expression=AK066103;TENOR=Os04t0103300-02;KEGG=Os04t0103300-02
Chr04	irgsp1_rep	five_prime_UTR	229750	229835	.	-	.	Parent=Os04t0103300-02
Chr04	irgsp1_rep	CDS	229666	229749	.	-	0	Parent=Os04t0103300-02
Chr04	irgsp1_rep	CDS	229332	229450	.	-	0	Parent=Os04t0103300-02
Chr04	irgsp1_rep	CDS	228965	229025	.	-	1	Parent=Os04t0103300-02
Chr04	irgsp1_rep	CDS	228498	228664	.	-	0	Parent=Os04t0103300-02
Chr04	irgsp1_rep	CDS	228000	228114	.	-	1	Parent=Os04t0103300-02
Chr04	irgsp1_rep	CDS	227686	227888	.	-	0	Parent=Os04t0103300-02
Chr04	irgsp1_rep	CDS	227481	227591	.	-	1	Parent=Os04t0103300-02
Chr04	irgsp1_rep	CDS	227203	227299	.	-	1	Parent=Os04t0103300-02
Chr04	irgsp1_rep	three_prime_UTR	227088	227202	.	-	.	Parent=Os04t0103300-02
Chr04	irgsp1_rep	mRNA	226937	229776	.	-	.	ID=Os04t0103300-03;Name=Os04t0103300-03;Locus_id=Os04g0103300;Oryzabase Gene Symbol Synonym(s)=OsRhmbd10%2C RHMBD10;Oryzabase Gene Name Synonym(s)=Rhomboid 10%2C RHOMBOID 10;Note=Protein of unknown function DUF1751%2C integral membrane%2C eukaryotic domain containing protein.;Transcript_evidence=AK061755 (DDBJ%2C Best hit);ORF_evidence=Q01N34 (UniProt);InterPro=Protein of unknown function DUF1751%2C integral membrane%2C eukaryotic (IPR013861);NIAS_FLcDNA=001-039-A02;Oryzabase=20066;TENOR=Os04t0103300-03
Chr04	irgsp1_rep	five_prime_UTR	229750	229776	.	-	.	Parent=Os04t0103300-03
Chr04	irgsp1_rep	CDS	229666	229749	.	-	0	Parent=Os04t0103300-03
Chr04	irgsp1_rep	CDS	229332	229450	.	-	0	Parent=Os04t0103300-03
Chr04	irgsp1_rep	CDS	228965	229025	.	-	1	Parent=Os04t0103300-03
Chr04	irgsp1_rep	CDS	228498	228664	.	-	0	Parent=Os04t0103300-03
Chr04	irgsp1_rep	CDS	228000	228114	.	-	1	Parent=Os04t0103300-03
Chr04	irgsp1_rep	CDS	227686	227888	.	-	0	Parent=Os04t0103300-03
Chr04	irgsp1_rep	CDS	227481	227591	.	-	1	Parent=Os04t0103300-03
Chr04	irgsp1_rep	CDS	227203	227299	.	-	1	Parent=Os04t0103300-03
Chr04	irgsp1_rep	three_prime_UTR	226937	227202	.	-	.	Parent=Os04t0103300-03
Chr04	irgsp1_rep	mRNA	227030	228665	.	+	.	ID=Os04t0103351-00;Name=Os04t0103351-00;Locus_id=Os04g0103351;Note=Non-protein coding transcript.;Transcript_evidence=BT017350 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0103351-00
Chr04	irgsp1_rep	exon	227030	227298	.	+	.	Parent=Os04t0103351-00
Chr04	irgsp1_rep	exon	227480	227593	.	+	.	Parent=Os04t0103351-00
Chr04	irgsp1_rep	exon	227688	227888	.	+	.	Parent=Os04t0103351-00
Chr04	irgsp1_rep	exon	228000	228106	.	+	.	Parent=Os04t0103351-00
Chr04	irgsp1_rep	exon	228490	228665	.	+	.	Parent=Os04t0103351-00
Chr04	irgsp1_rep	mRNA	238777	239343	.	+	.	ID=Os04t0103400-01;Name=Os04t0103400-01;Locus_id=Os04g0103400;Note=Hypothetical conserved gene.;Transcript_evidence=AK062504 (DDBJ%2C Best hit);ORF_evidence=B8ATY6 (UniProt);NIAS_FLcDNA=001-104-B05;Expression=AK062504;TENOR=Os04t0103400-01;KEGG=Os04t0103400-01
Chr04	irgsp1_rep	five_prime_UTR	238777	238893	.	+	.	Parent=Os04t0103400-01
Chr04	irgsp1_rep	CDS	238894	238961	.	+	0	Parent=Os04t0103400-01
Chr04	irgsp1_rep	CDS	239106	239190	.	+	1	Parent=Os04t0103400-01
Chr04	irgsp1_rep	three_prime_UTR	239191	239343	.	+	.	Parent=Os04t0103400-01
Chr04	irgsp1_rep	mRNA	240549	243305	.	-	.	ID=Os04t0103500-01;Name=Os04t0103500-01;Locus_id=Os04g0103500;Oryzabase Gene Symbol Synonym(s)=YK28;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK073860 (DDBJ%2C Best hit);ORF_evidence=Q01N33 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),S-receptor-like serine/threonine-protein kinase (IPR024171);NIAS_FLcDNA=J033072E15;Oryzabase=15190;Expression=AK073860;TENOR=Os04t0103500-01;KEGG=Os04t0103500-01
Chr04	irgsp1_rep	five_prime_UTR	243175	243305	.	-	.	Parent=Os04t0103500-01
Chr04	irgsp1_rep	CDS	240688	243174	.	-	0	Parent=Os04t0103500-01
Chr04	irgsp1_rep	three_prime_UTR	240549	240687	.	-	.	Parent=Os04t0103500-01
Chr04	irgsp1_rep	mRNA	244295	244763	.	-	.	ID=Os04t0103601-01;Name=Os04t0103601-01;Locus_id=Os04g0103601;Note=Conserved hypothetical protein.;Transcript_evidence=AK243141 (DDBJ%2C Best hit);ORF_evidence=NP_001173728.1 (RefSeq);NIAS_FLcDNA=J100031J08;TENOR=Os04t0103601-01;KEGG=Os04t0103601-01
Chr04	irgsp1_rep	five_prime_UTR	244613	244763	.	-	.	Parent=Os04t0103601-01
Chr04	irgsp1_rep	CDS	244358	244612	.	-	0	Parent=Os04t0103601-01
Chr04	irgsp1_rep	three_prime_UTR	244295	244357	.	-	.	Parent=Os04t0103601-01
Chr04	irgsp1_rep	mRNA	246535	249229	.	-	.	ID=Os04t0103700-01;Name=Os04t0103700-01;Locus_id=Os04g0103700;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK103833 (DDBJ%2C Best hit);ORF_evidence=Q01N32 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),S-receptor-like serine/threonine-protein kinase (IPR024171);NIAS_FLcDNA=J033148B20;Expression=AK103833;TENOR=Os04t0103700-01;KEGG=Os04t0103700-01
Chr04	irgsp1_rep	five_prime_UTR	249162	249229	.	-	.	Parent=Os04t0103700-01
Chr04	irgsp1_rep	CDS	246720	249161	.	-	0	Parent=Os04t0103700-01
Chr04	irgsp1_rep	three_prime_UTR	246535	246719	.	-	.	Parent=Os04t0103700-01
Chr04	irgsp1_rep	mRNA	250467	251388	.	+	.	ID=Os04t0103800-01;Name=Os04t0103800-01;Locus_id=Os04g0103800;Note=Hypothetical protein.;Transcript_evidence=AK110629 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-169-B07;Oryzabase=20002;Expression=AK110629;TENOR=Os04t0103800-01;KEGG=Os04t0103800-01
Chr04	irgsp1_rep	five_prime_UTR	250467	250712	.	+	.	Parent=Os04t0103800-01
Chr04	irgsp1_rep	CDS	250713	251228	.	+	0	Parent=Os04t0103800-01
Chr04	irgsp1_rep	three_prime_UTR	251229	251388	.	+	.	Parent=Os04t0103800-01
Chr04	irgsp1_rep	mRNA	258818	263006	.	-	.	ID=Os04t0103900-01;Name=Os04t0103900-01;Locus_id=Os04g0103900;Oryzabase Gene Symbol Synonym(s)=CHS%2C OsPKS02%2C OsPKS2%2C PKS02%2C PKS2%2C OsCHS2%2C CHS2;Oryzabase Gene Name Synonym(s)=Chalcone synthase%2C polyketide synthase 2%2C Chalcone synthase 2;Note=Similar to Chalcone synthase.;Transcript_evidence=AK100989 (DDBJ%2C Best hit);ORF_evidence=Q01N31 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Chalcone/stilbene synthase%2C N-terminal (IPR001099),Polyketide synthase%2C type III (IPR011141),Chalcone/stilbene synthase%2C C-terminal (IPR012328),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);NIAS_FLcDNA=J023145I15;Oryzabase=16779;Expression=AK100989;TENOR=Os04t0103900-01;KEGG=Os04t0103900-01
Chr04	irgsp1_rep	five_prime_UTR	262768	263006	.	-	.	Parent=Os04t0103900-01
Chr04	irgsp1_rep	CDS	262593	262767	.	-	0	Parent=Os04t0103900-01
Chr04	irgsp1_rep	CDS	259095	260101	.	-	2	Parent=Os04t0103900-01
Chr04	irgsp1_rep	three_prime_UTR	258818	259094	.	-	.	Parent=Os04t0103900-01
Chr04	irgsp1_rep	mRNA	259231	260109	.	+	.	ID=Os04t0104350-00;Name=Os04t0104350-00;Locus_id=Os04g0104350;Note=Hypothetical protein.;Transcript_evidence=BT063109 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0104350-00
Chr04	irgsp1_rep	five_prime_UTR	259231	259245	.	+	.	Parent=Os04t0104350-00
Chr04	irgsp1_rep	CDS	259246	260076	.	+	0	Parent=Os04t0104350-00
Chr04	irgsp1_rep	three_prime_UTR	260077	260109	.	+	.	Parent=Os04t0104350-00
Chr04	irgsp1_rep	mRNA	316562	319162	.	+	.	ID=Os04t0104900-01;Name=Os04t0104900-01;Locus_id=Os04g0104900;CGSNL Gene Symbol=COMTL2;CGSNL Gene Name=CAFFEIC ACID 3-O-METHYLTRANSFERASE LIKE 2;Oryzabase Gene Symbol Synonym(s)=OsCOMTL2;Note=Similar to 0-methyltransferase (EC 2.1.1.6) (Fragment).;Transcript_evidence=AK069960 (DDBJ%2C Best hit);ORF_evidence=A3AQ43 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: O-methyltransferase activity (GO:0008171),Molecular Function: protein dimerization activity (GO:0046983);InterPro=O-methyltransferase%2C family 2 (IPR001077),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Plant methyltransferase dimerisation (IPR012967),O-methyltransferase%2C COMT%2C eukaryota (IPR016461);NIAS_FLcDNA=J023037K22;Oryzabase=10442;Expression=AK069960;TENOR=Os04t0104900-01;KEGG=Os04t0104900-01 (EC:2.1.1.6)
Chr04	irgsp1_rep	five_prime_UTR	316562	316569	.	+	.	Parent=Os04t0104900-01
Chr04	irgsp1_rep	CDS	316570	317269	.	+	0	Parent=Os04t0104900-01
Chr04	irgsp1_rep	CDS	317872	317936	.	+	2	Parent=Os04t0104900-01
Chr04	irgsp1_rep	CDS	318705	319004	.	+	0	Parent=Os04t0104900-01
Chr04	irgsp1_rep	three_prime_UTR	319005	319162	.	+	.	Parent=Os04t0104900-01
Chr04	irgsp1_rep	mRNA	321281	328894	.	+	.	ID=Os04t0105000-01;Name=Os04t0105000-01;Locus_id=Os04g0105000;Note=Zinc finger%2C CCCH-type domain containing protein.;Transcript_evidence=AK120156 (DDBJ%2C Best hit);ORF_evidence=Q7XXI8 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013030B09;TENOR=Os04t0105000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	321281	321373	.	+	.	Parent=Os04t0105000-01
Chr04	irgsp1_rep	CDS	321374	321812	.	+	0	Parent=Os04t0105000-01
Chr04	irgsp1_rep	CDS	323676	323770	.	+	2	Parent=Os04t0105000-01
Chr04	irgsp1_rep	CDS	323851	324132	.	+	0	Parent=Os04t0105000-01
Chr04	irgsp1_rep	CDS	324214	324286	.	+	0	Parent=Os04t0105000-01
Chr04	irgsp1_rep	CDS	324733	324865	.	+	2	Parent=Os04t0105000-01
Chr04	irgsp1_rep	CDS	324936	325089	.	+	1	Parent=Os04t0105000-01
Chr04	irgsp1_rep	CDS	325223	325303	.	+	0	Parent=Os04t0105000-01
Chr04	irgsp1_rep	CDS	325634	325840	.	+	0	Parent=Os04t0105000-01
Chr04	irgsp1_rep	three_prime_UTR	325841	326247	.	+	.	Parent=Os04t0105000-01
Chr04	irgsp1_rep	three_prime_UTR	326322	326456	.	+	.	Parent=Os04t0105000-01
Chr04	irgsp1_rep	three_prime_UTR	326619	326714	.	+	.	Parent=Os04t0105000-01
Chr04	irgsp1_rep	three_prime_UTR	326876	327370	.	+	.	Parent=Os04t0105000-01
Chr04	irgsp1_rep	three_prime_UTR	328139	328182	.	+	.	Parent=Os04t0105000-01
Chr04	irgsp1_rep	three_prime_UTR	328478	328894	.	+	.	Parent=Os04t0105000-01
Chr04	irgsp1_rep	mRNA	327298	328772	.	-	.	ID=Os04t0105050-00;Name=Os04t0105050-00;Locus_id=Os04g0105050;Note=Hypothetical gene.;Transcript_evidence=BT017284 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0105050-00;KEGG=Os04t0105050-00
Chr04	irgsp1_rep	five_prime_UTR	328739	328772	.	-	.	Parent=Os04t0105050-00
Chr04	irgsp1_rep	CDS	328450	328738	.	-	0	Parent=Os04t0105050-00
Chr04	irgsp1_rep	CDS	327366	327388	.	-	2	Parent=Os04t0105050-00
Chr04	irgsp1_rep	three_prime_UTR	327298	327365	.	-	.	Parent=Os04t0105050-00
Chr04	irgsp1_rep	mRNA	333801	337060	.	+	.	ID=Os04t0105100-01;Name=Os04t0105100-01;Locus_id=Os04g0105100;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK071063 (DDBJ%2C Best hit),AK105914 (DDBJ%2C Best hit);ORF_evidence=NP_001148132.1 (RefSeq);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-CH-type (IPR011016),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J023080A01,001-204-H07;TENOR=Os04t0105100-01
Chr04	irgsp1_rep	five_prime_UTR	333801	333881	.	+	.	Parent=Os04t0105100-01
Chr04	irgsp1_rep	CDS	333882	333905	.	+	0	Parent=Os04t0105100-01
Chr04	irgsp1_rep	CDS	334330	334725	.	+	0	Parent=Os04t0105100-01
Chr04	irgsp1_rep	CDS	334826	335006	.	+	0	Parent=Os04t0105100-01
Chr04	irgsp1_rep	CDS	335241	335532	.	+	2	Parent=Os04t0105100-01
Chr04	irgsp1_rep	CDS	335849	335921	.	+	1	Parent=Os04t0105100-01
Chr04	irgsp1_rep	CDS	336070	336160	.	+	0	Parent=Os04t0105100-01
Chr04	irgsp1_rep	CDS	336275	336354	.	+	2	Parent=Os04t0105100-01
Chr04	irgsp1_rep	CDS	336452	336694	.	+	0	Parent=Os04t0105100-01
Chr04	irgsp1_rep	three_prime_UTR	336695	337060	.	+	.	Parent=Os04t0105100-01
Chr04	irgsp1_rep	mRNA	333972	337060	.	+	.	ID=Os04t0105100-02;Name=Os04t0105100-02;Locus_id=Os04g0105100;RAP-DB Gene Symbol Synonym(s)=OsSIRP4;RAP-DB Gene Name Synonym(s)=salt-induced RING finger protein 4;Note=RING E3 ligase%2C Negative regulation of salt stress response;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-CH-type (IPR011016);Manual Curation=October 21%2C 2020;Literature_PMID=33079323;Subcellular location=plasma membrane (GO:0005886), cytosol (GO:0005829)
Chr04	irgsp1_rep	five_prime_UTR	333972	334109	.	+	.	Parent=Os04t0105100-02
Chr04	irgsp1_rep	CDS	334110	334241	.	+	0	Parent=Os04t0105100-02
Chr04	irgsp1_rep	CDS	334330	334725	.	+	0	Parent=Os04t0105100-02
Chr04	irgsp1_rep	CDS	334826	335006	.	+	0	Parent=Os04t0105100-02
Chr04	irgsp1_rep	CDS	335241	335532	.	+	2	Parent=Os04t0105100-02
Chr04	irgsp1_rep	CDS	335849	335921	.	+	1	Parent=Os04t0105100-02
Chr04	irgsp1_rep	CDS	336070	336160	.	+	0	Parent=Os04t0105100-02
Chr04	irgsp1_rep	CDS	336275	336354	.	+	2	Parent=Os04t0105100-02
Chr04	irgsp1_rep	CDS	336452	336694	.	+	0	Parent=Os04t0105100-02
Chr04	irgsp1_rep	three_prime_UTR	336695	337060	.	+	.	Parent=Os04t0105100-02
Chr04	irgsp1_rep	mRNA	346725	347514	.	+	.	ID=Os04t0105200-01;Name=Os04t0105200-01;Locus_id=Os04g0105200;Note=Similar to B0616E02-H0507E05.1 protein.;Transcript_evidence=AK058807 (DDBJ%2C Best hit);ORF_evidence=Q01HX1 (UniProt);NIAS_FLcDNA=001-003-C04;Expression=AK058807;TENOR=Os04t0105200-01;KEGG=Os04t0105200-01
Chr04	irgsp1_rep	five_prime_UTR	346725	346808	.	+	.	Parent=Os04t0105200-01
Chr04	irgsp1_rep	CDS	346809	347201	.	+	0	Parent=Os04t0105200-01
Chr04	irgsp1_rep	three_prime_UTR	347202	347514	.	+	.	Parent=Os04t0105200-01
Chr04	irgsp1_rep	mRNA	354021	355335	.	+	.	ID=Os04t0105300-01;Name=Os04t0105300-01;Locus_id=Os04g0105300;Note=Protein of unknown function DUF1295 family protein.;Transcript_evidence=AK060144 (DDBJ%2C Best hit);ORF_evidence=B7ESG4 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Cellular Component: cytoplasm (GO:0005737),Cellular Component: integral to membrane (GO:0016021),Molecular Function: oxidoreductase activity%2C acting on the CH-CH group of donors (GO:0016627);InterPro=3-oxo-5-alpha-steroid 4-dehydrogenase%2C C-terminal (IPR001104),Protein of unknown function DUF1295 (IPR010721);NIAS_FLcDNA=006-310-A05;Expression=AK060144;TENOR=Os04t0105300-01;KEGG=Os04t0105300-01
Chr04	irgsp1_rep	five_prime_UTR	354021	354022	.	+	.	Parent=Os04t0105300-01
Chr04	irgsp1_rep	CDS	354023	354161	.	+	0	Parent=Os04t0105300-01
Chr04	irgsp1_rep	CDS	354441	355165	.	+	2	Parent=Os04t0105300-01
Chr04	irgsp1_rep	three_prime_UTR	355166	355335	.	+	.	Parent=Os04t0105300-01
Chr04	irgsp1_rep	mRNA	354058	355463	.	+	.	ID=Os04t0105300-02;Name=Os04t0105300-02;Locus_id=Os04g0105300;Note=Similar to B0616E02-H0507E05.2 protein.;Transcript_evidence=AK101957 (DDBJ%2C Best hit);ORF_evidence=Q01HX0 (UniProt);NIAS_FLcDNA=J033075M20;Expression=AK101957;TENOR=Os04t0105300-02;KEGG=Os04t0105300-02
Chr04	irgsp1_rep	five_prime_UTR	354058	354080	.	+	.	Parent=Os04t0105300-02
Chr04	irgsp1_rep	CDS	354081	354314	.	+	0	Parent=Os04t0105300-02
Chr04	irgsp1_rep	three_prime_UTR	354315	355463	.	+	.	Parent=Os04t0105300-02
Chr04	irgsp1_rep	mRNA	357603	360450	.	-	.	ID=Os04t0105400-01;Name=Os04t0105400-01;Locus_id=Os04g0105400;CGSNL Gene Symbol=NOPE1;CGSNL Gene Name=NO PERCEPTION 1;Oryzabase Gene Name Synonym(s)=no perception 1;Note=Similar to B0616E02-H0507E05.3 protein.;Transcript_evidence=AK101964 (DDBJ%2C Best hit);ORF_evidence=Q01HW9 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J033076E11;Oryzabase=21810;TENOR=Os04t0105400-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	360373	360450	.	-	.	Parent=Os04t0105400-01
Chr04	irgsp1_rep	CDS	359211	360372	.	-	0	Parent=Os04t0105400-01
Chr04	irgsp1_rep	CDS	357947	358026	.	-	2	Parent=Os04t0105400-01
Chr04	irgsp1_rep	three_prime_UTR	357603	357946	.	-	.	Parent=Os04t0105400-01
Chr04	irgsp1_rep	mRNA	359245	360369	.	+	.	ID=Os04t0105450-00;Name=Os04t0105450-00;Locus_id=Os04g0105450;Note=Non-protein coding transcript.;Transcript_evidence=BT039291 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0105450-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	exon	359245	359733	.	+	.	Parent=Os04t0105450-00
Chr04	irgsp1_rep	exon	359816	360369	.	+	.	Parent=Os04t0105450-00
Chr04	irgsp1_rep	mRNA	362983	367447	.	-	.	ID=Os04t0105500-01;Name=Os04t0105500-01;Locus_id=Os04g0105500;Note=Similar to B0616E02-H0507E05.4 protein.;Transcript_evidence=AK071444 (DDBJ%2C Best hit);ORF_evidence=Q01HW8 (UniProt);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Biological Process: nucleotide phosphorylation (GO:0046939),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphotransferase activity%2C phosphate group as acceptor (GO:0016776),Molecular Function: nucleotide kinase activity (GO:0019201),Molecular Function: nucleobase-containing compound kinase activity (GO:0019205);InterPro=Adenylate kinase (IPR000850),UMP-CMP kinase (IPR006266);NIAS_FLcDNA=J023093I17;TENOR=Os04t0105500-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	367362	367447	.	-	.	Parent=Os04t0105500-01
Chr04	irgsp1_rep	CDS	367266	367361	.	-	0	Parent=Os04t0105500-01
Chr04	irgsp1_rep	CDS	367091	367141	.	-	0	Parent=Os04t0105500-01
Chr04	irgsp1_rep	CDS	366945	366993	.	-	0	Parent=Os04t0105500-01
Chr04	irgsp1_rep	CDS	366450	366567	.	-	2	Parent=Os04t0105500-01
Chr04	irgsp1_rep	CDS	366189	366345	.	-	1	Parent=Os04t0105500-01
Chr04	irgsp1_rep	CDS	365675	365755	.	-	0	Parent=Os04t0105500-01
Chr04	irgsp1_rep	CDS	365170	365277	.	-	0	Parent=Os04t0105500-01
Chr04	irgsp1_rep	CDS	364644	364708	.	-	0	Parent=Os04t0105500-01
Chr04	irgsp1_rep	CDS	363284	363290	.	-	1	Parent=Os04t0105500-01
Chr04	irgsp1_rep	three_prime_UTR	362983	363283	.	-	.	Parent=Os04t0105500-01
Chr04	irgsp1_rep	mRNA	364005	367434	.	-	.	ID=Os04t0105500-02;Name=Os04t0105500-02;Locus_id=Os04g0105500;Note=Similar to B0616E02-H0507E05.4 protein.;Transcript_evidence=AK068066 (DDBJ%2C Best hit);ORF_evidence=Q01HW8 (UniProt);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Biological Process: nucleotide phosphorylation (GO:0046939),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphotransferase activity%2C phosphate group as acceptor (GO:0016776),Molecular Function: nucleotide kinase activity (GO:0019201),Molecular Function: nucleobase-containing compound kinase activity (GO:0019205);InterPro=Adenylate kinase (IPR000850),UMP-CMP kinase (IPR006266);NIAS_FLcDNA=J013130G18;TENOR=Os04t0105500-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	367362	367434	.	-	.	Parent=Os04t0105500-02
Chr04	irgsp1_rep	CDS	367266	367361	.	-	0	Parent=Os04t0105500-02
Chr04	irgsp1_rep	CDS	367091	367141	.	-	0	Parent=Os04t0105500-02
Chr04	irgsp1_rep	CDS	366945	366993	.	-	0	Parent=Os04t0105500-02
Chr04	irgsp1_rep	CDS	366450	366567	.	-	2	Parent=Os04t0105500-02
Chr04	irgsp1_rep	CDS	366189	366345	.	-	1	Parent=Os04t0105500-02
Chr04	irgsp1_rep	CDS	365675	365755	.	-	0	Parent=Os04t0105500-02
Chr04	irgsp1_rep	CDS	365170	365277	.	-	0	Parent=Os04t0105500-02
Chr04	irgsp1_rep	CDS	364644	364708	.	-	0	Parent=Os04t0105500-02
Chr04	irgsp1_rep	CDS	364320	364440	.	-	1	Parent=Os04t0105500-02
Chr04	irgsp1_rep	three_prime_UTR	364005	364319	.	-	.	Parent=Os04t0105500-02
Chr04	irgsp1_rep	mRNA	370795	372419	.	-	.	ID=Os04t0105700-01;Name=Os04t0105700-01;Locus_id=Os04g0105700;Note=Similar to B0616E02-H0507E05.5 protein.;Transcript_evidence=AK060872 (DDBJ%2C Best hit),AK065082 (DDBJ%2C Best hit),AK104254 (DDBJ%2C Best hit),AK104546 (DDBJ%2C Best hit),AK104634 (DDBJ%2C Best hit);ORF_evidence=Q01HW7 (UniProt);NIAS_FLcDNA=001-034-H11,J013001L09,006-309-C07,006-305-C04,006-310-D01;TENOR=Os04t0105700-01
Chr04	irgsp1_rep	five_prime_UTR	372372	372419	.	-	.	Parent=Os04t0105700-01
Chr04	irgsp1_rep	CDS	372234	372371	.	-	0	Parent=Os04t0105700-01
Chr04	irgsp1_rep	CDS	372016	372162	.	-	0	Parent=Os04t0105700-01
Chr04	irgsp1_rep	CDS	371771	371941	.	-	0	Parent=Os04t0105700-01
Chr04	irgsp1_rep	CDS	371620	371680	.	-	0	Parent=Os04t0105700-01
Chr04	irgsp1_rep	CDS	371414	371499	.	-	2	Parent=Os04t0105700-01
Chr04	irgsp1_rep	CDS	371226	371315	.	-	0	Parent=Os04t0105700-01
Chr04	irgsp1_rep	CDS	371043	371105	.	-	0	Parent=Os04t0105700-01
Chr04	irgsp1_rep	three_prime_UTR	370795	371042	.	-	.	Parent=Os04t0105700-01
Chr04	irgsp1_rep	mRNA	381943	382891	.	+	.	ID=Os04t0105900-00;Name=Os04t0105900-00;Locus_id=Os04g0105900;Note=Protein of unknown function DUF1719%2C Oryza sativa domain containing protein.;Transcript_evidence=AK335807 (DDBJ);ORF_evidence=Q7X669 (UniProt);InterPro=Protein of unknown function DUF1719%2C Oryza sativa (IPR013181);TENOR=Os04t0105900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	381943	381946	.	+	.	Parent=Os04t0105900-00
Chr04	irgsp1_rep	CDS	381947	382891	.	+	0	Parent=Os04t0105900-00
Chr04	irgsp1_rep	mRNA	386221	386877	.	-	.	ID=Os04t0106000-01;Name=Os04t0106000-01;Locus_id=Os04g0106000;Note=Pectinesterase inhibitor domain containing protein.;Transcript_evidence=AK111054 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);NIAS_FLcDNA=002-175-C11;Expression=AK111054;TENOR=Os04t0106000-01;KEGG=Os04t0106000-01
Chr04	irgsp1_rep	CDS	386344	386877	.	-	0	Parent=Os04t0106000-01
Chr04	irgsp1_rep	three_prime_UTR	386221	386343	.	-	.	Parent=Os04t0106000-01
Chr04	irgsp1_rep	mRNA	396563	400802	.	+	.	ID=Os04t0106300-01;Name=Os04t0106300-01;Locus_id=Os04g0106300;RAP-DB Gene Symbol Synonym(s)=OsARG%2C Nglf%2C Nglf-1;RAP-DB Gene Name Synonym(s)=narrow grain and low fertility%2C arginase%2C Osarginase;CGSNL Gene Symbol=NGLF;CGSNL Gene Name=NARROW GRAIN AND LOW FERTILITY;Oryzabase Gene Symbol Synonym(s)=OsARG%2C ARG%2C Nglf%2C Nglf-1%2C OsAGM%2C AGM;Oryzabase Gene Name Synonym(s)=narrow grain and low fertility%2C arginase%2C Osarginase;Note=Arginine hydrolysis enzyme%2C Arginase%2C Panicle development and grain production;Transcript_evidence=AK101488,AK059655;ORF_evidence=Q7X7N2;GO=Molecular Function: hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds%2C in linear amidines (GO:0016813),Molecular Function: metal ion binding (GO:0046872);InterPro=Ureohydrolase (IPR006035),Ureohydrolase domain (IPR023696),Ureohydrolase%2C manganese-binding site (IPR020855);NIAS_FLcDNA=J033042E01,001-031-D03;Manual Curation=May 23%2C 2014;Literature_PMID=22882555;Oryzabase=11534;TENOR=Os04t0106300-01
Chr04	irgsp1_rep	five_prime_UTR	396563	396688	.	+	.	Parent=Os04t0106300-01
Chr04	irgsp1_rep	CDS	396689	396835	.	+	0	Parent=Os04t0106300-01
Chr04	irgsp1_rep	CDS	398236	398395	.	+	0	Parent=Os04t0106300-01
Chr04	irgsp1_rep	CDS	398484	398617	.	+	2	Parent=Os04t0106300-01
Chr04	irgsp1_rep	CDS	398836	399045	.	+	0	Parent=Os04t0106300-01
Chr04	irgsp1_rep	CDS	399358	399468	.	+	0	Parent=Os04t0106300-01
Chr04	irgsp1_rep	CDS	400309	400569	.	+	0	Parent=Os04t0106300-01
Chr04	irgsp1_rep	three_prime_UTR	400570	400802	.	+	.	Parent=Os04t0106300-01
Chr04	irgsp1_rep	mRNA	400959	405337	.	+	.	ID=Os04t0106400-01;Name=Os04t0106400-01;Locus_id=Os04g0106400;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK105953 (DDBJ%2C Best hit),AK072049 (DDBJ%2C Best hit);ORF_evidence=Q01HW4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: cofactor binding (GO:0048037),Molecular Function: NAD binding (GO:0051287);InterPro=D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain (IPR006139),D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding (IPR006140),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-205-D04,J013110E20;TENOR=Os04t0106400-01
Chr04	irgsp1_rep	five_prime_UTR	400959	401025	.	+	.	Parent=Os04t0106400-01
Chr04	irgsp1_rep	CDS	401026	401490	.	+	0	Parent=Os04t0106400-01
Chr04	irgsp1_rep	CDS	404420	404944	.	+	0	Parent=Os04t0106400-01
Chr04	irgsp1_rep	three_prime_UTR	404945	404971	.	+	.	Parent=Os04t0106400-01
Chr04	irgsp1_rep	three_prime_UTR	405173	405337	.	+	.	Parent=Os04t0106400-01
Chr04	irgsp1_rep	mRNA	400959	405125	.	+	.	ID=Os04t0106400-02;Name=Os04t0106400-02;Locus_id=Os04g0106400;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK068763 (DDBJ%2C Best hit);ORF_evidence=Q01HW4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: cofactor binding (GO:0048037),Molecular Function: NAD binding (GO:0051287);InterPro=D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain (IPR006139),D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding (IPR006140),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013164G01;Expression=AK068763;TENOR=Os04t0106400-02;KEGG=Os04t0106400-02
Chr04	irgsp1_rep	five_prime_UTR	400959	401025	.	+	.	Parent=Os04t0106400-02
Chr04	irgsp1_rep	CDS	401026	401490	.	+	0	Parent=Os04t0106400-02
Chr04	irgsp1_rep	CDS	404420	404944	.	+	0	Parent=Os04t0106400-02
Chr04	irgsp1_rep	three_prime_UTR	404945	405125	.	+	.	Parent=Os04t0106400-02
Chr04	irgsp1_rep	mRNA	410669	412516	.	-	.	ID=Os04t0106500-00;Name=Os04t0106500-00;Locus_id=Os04g0106500;Note=Similar to B0616E02-H0507E05.9 protein.;Transcript_evidence=BT088059 (DDBJ);ORF_evidence=Q01HW3 (UniProt);TENOR=Os04t0106500-00;KEGG=Os04t0106500-00
Chr04	irgsp1_rep	CDS	410669	412516	.	-	0	Parent=Os04t0106500-00
Chr04	irgsp1_rep	mRNA	443167	444830	.	-	.	ID=Os04t0107200-01;Name=Os04t0107200-01;Locus_id=Os04g0107200;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK106201 (DDBJ%2C Best hit);ORF_evidence=Q01HW2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: cofactor binding (GO:0048037),Molecular Function: NAD binding (GO:0051287);InterPro=D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain (IPR006139),D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding (IPR006140),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-208-F05;Expression=AK106201;TENOR=Os04t0107200-01;KEGG=Os04t0107200-01
Chr04	irgsp1_rep	CDS	444366	444830	.	-	0	Parent=Os04t0107200-01
Chr04	irgsp1_rep	CDS	443309	443833	.	-	0	Parent=Os04t0107200-01
Chr04	irgsp1_rep	three_prime_UTR	443167	443308	.	-	.	Parent=Os04t0107200-01
Chr04	irgsp1_rep	mRNA	446012	447110	.	+	.	ID=Os04t0107300-01;Name=Os04t0107300-01;Locus_id=Os04g0107300;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK070553 (DDBJ%2C Best hit);ORF_evidence=Q01HW1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: cofactor binding (GO:0048037),Molecular Function: NAD binding (GO:0051287);InterPro=D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain (IPR006139),D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding (IPR006140),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023059A13;Expression=AK070553;TENOR=Os04t0107300-01;KEGG=Os04t0107300-01
Chr04	irgsp1_rep	five_prime_UTR	446012	446052	.	+	.	Parent=Os04t0107300-01
Chr04	irgsp1_rep	CDS	446053	447033	.	+	0	Parent=Os04t0107300-01
Chr04	irgsp1_rep	three_prime_UTR	447034	447110	.	+	.	Parent=Os04t0107300-01
Chr04	irgsp1_rep	mRNA	453595	457102	.	+	.	ID=Os04t0107500-01;Name=Os04t0107500-01;Locus_id=Os04g0107500;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK102907 (DDBJ%2C Best hit);ORF_evidence=Q01HW0 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: cofactor binding (GO:0048037),Molecular Function: NAD binding (GO:0051287);InterPro=D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain (IPR006139),D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding (IPR006140),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033113H06;Expression=AK102907;TENOR=Os04t0107500-01;KEGG=Os04t0107500-01
Chr04	irgsp1_rep	five_prime_UTR	453595	453699	.	+	.	Parent=Os04t0107500-01
Chr04	irgsp1_rep	CDS	453700	454128	.	+	0	Parent=Os04t0107500-01
Chr04	irgsp1_rep	CDS	456290	456811	.	+	0	Parent=Os04t0107500-01
Chr04	irgsp1_rep	three_prime_UTR	456812	457102	.	+	.	Parent=Os04t0107500-01
Chr04	irgsp1_rep	mRNA	453648	457081	.	+	.	ID=Os04t0107500-02;Name=Os04t0107500-02;Locus_id=Os04g0107500;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK067010 (DDBJ%2C Best hit);ORF_evidence=Q01HW0 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: cofactor binding (GO:0048037),Molecular Function: NAD binding (GO:0051287);InterPro=D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain (IPR006139),D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding (IPR006140),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013091I17;Expression=AK067010;TENOR=Os04t0107500-02;KEGG=Os04t0107500-02
Chr04	irgsp1_rep	five_prime_UTR	453648	453699	.	+	.	Parent=Os04t0107500-02
Chr04	irgsp1_rep	CDS	453700	454128	.	+	0	Parent=Os04t0107500-02
Chr04	irgsp1_rep	CDS	456290	456811	.	+	0	Parent=Os04t0107500-02
Chr04	irgsp1_rep	three_prime_UTR	456812	457081	.	+	.	Parent=Os04t0107500-02
Chr04	irgsp1_rep	mRNA	463738	467257	.	+	.	ID=Os04t0107600-01;Name=Os04t0107600-01;Locus_id=Os04g0107600;RAP-DB Gene Symbol Synonym(s)=ADC2%2C ADCa%2C OsAdc2;RAP-DB Gene Name Synonym(s)=ARGININE DECARBOXYLASE 2%2C Arginine decarboxylase a%2C Arginine decarboxylase 2;CGSNL Gene Symbol=ADC2;CGSNL Gene Name=ARGININE DECARBOXYLASE 2;Oryzabase Gene Symbol Synonym(s)=ADCa%2C OsAdc2%2C OsADC2;Oryzabase Gene Name Synonym(s)=Arginine decarboxylase a%2C Arginine decarboxylase 2;Note=Arginine decarboxylase %2C Stress response;Transcript_evidence=AK058573,FJ746894 (EYI105%2C 18bp insertion);ORF_evidence=Q7XRA1;GO=Biological Process: arginine catabolic process (GO:0006527),Biological Process: spermidine biosynthetic process (GO:0008295),Molecular Function: catalytic activity (GO:0003824),Molecular Function: arginine decarboxylase activity (GO:0008792);InterPro=Ornithine/DAP/Arg decarboxylase (IPR000183),Arginine decarboxylase (IPR002985),PLP-binding barrel (IPR029066),Orn/DAP/Arg decarboxylase 2%2C N-terminal (IPR022644),Alanine racemase/group IV decarboxylase%2C C-terminal (IPR009006),Orn/DAP/Arg decarboxylase 2%2C C-terminal (IPR022643),Orn/DAP/Arg decarboxylase 2%2C pyridoxal-phosphate binding site (IPR022653),Orn/DAP/Arg decarboxylase 2%2C conserved site (IPR022657);NIAS_FLcDNA=001-017-E10;Manual Curation=July 10%2C 2015;Literature_PMID=20082138;Oryzabase=11219;Expression=AK058573;TENOR=Os04t0107600-01;KEGG=Os04t0107600-01 (EC:4.1.1.19)
Chr04	irgsp1_rep	five_prime_UTR	463738	463798	.	+	.	Parent=Os04t0107600-01
Chr04	irgsp1_rep	five_prime_UTR	465200	465220	.	+	.	Parent=Os04t0107600-01
Chr04	irgsp1_rep	CDS	465221	467092	.	+	0	Parent=Os04t0107600-01
Chr04	irgsp1_rep	three_prime_UTR	467093	467257	.	+	.	Parent=Os04t0107600-01
Chr04	irgsp1_rep	mRNA	465208	467271	.	+	.	ID=Os04t0107600-02;Name=Os04t0107600-02;Locus_id=Os04g0107600;CGSNL Gene Symbol=ADC2;CGSNL Gene Name=ARGININE DECARBOXYLASE 2;Oryzabase Gene Symbol Synonym(s)=ADCa%2C OsAdc2%2C OsADC2;Oryzabase Gene Name Synonym(s)=Arginine decarboxylase a%2C Arginine decarboxylase 2;Note=Arginine decarboxylase (EC 4.1.1.19).;Transcript_evidence=AK121110 (DDBJ%2C Best hit);ORF_evidence=Q01HV9 (UniProt);GO=Biological Process: arginine catabolic process (GO:0006527),Biological Process: spermidine biosynthetic process (GO:0008295),Molecular Function: catalytic activity (GO:0003824),Molecular Function: arginine decarboxylase activity (GO:0008792);InterPro=Ornithine/DAP/Arg decarboxylase (IPR000183),Arginine decarboxylase (IPR002985),Alanine racemase/group IV decarboxylase%2C C-terminal (IPR009006),Orn/DAP/Arg decarboxylase 2%2C C-terminal (IPR022643),Orn/DAP/Arg decarboxylase 2%2C N-terminal (IPR022644),Orn/DAP/Arg decarboxylase 2%2C pyridoxal-phosphate binding site (IPR022653),Orn/DAP/Arg decarboxylase 2%2C conserved site (IPR022657);NIAS_FLcDNA=J023073C19;Oryzabase=11219;Expression=AK121110;TENOR=Os04t0107600-02;KEGG=Os04t0107600-02 (EC:4.1.1.19)
Chr04	irgsp1_rep	five_prime_UTR	465208	465220	.	+	.	Parent=Os04t0107600-02
Chr04	irgsp1_rep	CDS	465221	467092	.	+	0	Parent=Os04t0107600-02
Chr04	irgsp1_rep	three_prime_UTR	467093	467271	.	+	.	Parent=Os04t0107600-02
Chr04	irgsp1_rep	mRNA	465092	467098	.	-	.	ID=Os04t0107650-00;Name=Os04t0107650-00;Locus_id=Os04g0107650;Note=Similar to Arginine decarboxylase.;Transcript_evidence=AK335026 (DDBJ);ORF_evidence=Q01HV9 (UniProt);TENOR=Os04t0107650-00
Chr04	irgsp1_rep	CDS	465092	467098	.	-	0	Parent=Os04t0107650-00
Chr04	irgsp1_rep	mRNA	471138	472885	.	-	.	ID=Os04t0107700-01;Name=Os04t0107700-01;Locus_id=Os04g0107700;Note=Peptidase C1A%2C papain family protein.;Transcript_evidence=AK110974 (DDBJ%2C Best hit);ORF_evidence=A2XPL6 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase%2C cysteine peptidase active site (IPR000169),Peptidase C1A%2C papain C-terminal (IPR000668),Peptidase C1A%2C papain (IPR013128),Proteinase inhibitor I29%2C cathepsin propeptide (IPR013201);NIAS_FLcDNA=002-174-C02;Expression=AK110974;TENOR=Os04t0107700-01;KEGG=Os04t0107700-01 (EC:3.4.22.15)
Chr04	irgsp1_rep	five_prime_UTR	472861	472885	.	-	.	Parent=Os04t0107700-01
Chr04	irgsp1_rep	CDS	472317	472860	.	-	0	Parent=Os04t0107700-01
Chr04	irgsp1_rep	CDS	471338	471945	.	-	2	Parent=Os04t0107700-01
Chr04	irgsp1_rep	three_prime_UTR	471138	471337	.	-	.	Parent=Os04t0107700-01
Chr04	irgsp1_rep	mRNA	483234	485958	.	+	.	ID=Os04t0107900-01;Name=Os04t0107900-01;Locus_id=Os04g0107900;Oryzabase Gene Symbol Synonym(s)=Hsp90%2C OsHSP90.1;Oryzabase Gene Name Synonym(s)=Heat shock protein 90.1;Note=Similar to Heat shock protein 82.;Transcript_evidence=AK063698 (DDBJ%2C Best hit);ORF_evidence=NP_001135416.2 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Biological Process: response to stress (GO:0006950),Molecular Function: ATP binding (GO:0005524),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein Hsp90 (IPR001404);NIAS_FLcDNA=001-119-G05;Oryzabase=15517;Expression=AK063698;TENOR=Os04t0107900-01;KEGG=Os04t0107900-01
Chr04	irgsp1_rep	five_prime_UTR	483234	483235	.	+	.	Parent=Os04t0107900-01
Chr04	irgsp1_rep	CDS	483236	483277	.	+	0	Parent=Os04t0107900-01
Chr04	irgsp1_rep	CDS	485495	485725	.	+	0	Parent=Os04t0107900-01
Chr04	irgsp1_rep	three_prime_UTR	485726	485958	.	+	.	Parent=Os04t0107900-01
Chr04	irgsp1_rep	mRNA	483241	484360	.	+	.	ID=Os04t0107900-02;Name=Os04t0107900-02;Locus_id=Os04g0107900;Oryzabase Gene Symbol Synonym(s)=Hsp90%2C OsHSP90.1;Oryzabase Gene Name Synonym(s)=Heat shock protein 90.1;Note=Heat shock protein 81-1 (HSP81-1) (Heat shock protein 83).;Transcript_evidence=AK063568 (DDBJ%2C Best hit);ORF_evidence=NP_200076.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Biological Process: response to stress (GO:0006950),Molecular Function: ATP binding (GO:0005524),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein Hsp90 (IPR001404),ATPase-like%2C ATP-binding domain (IPR003594),Heat shock protein Hsp90%2C conserved site (IPR019805),Heat shock protein Hsp90%2C N-terminal (IPR020575);NIAS_FLcDNA=001-117-G02;Oryzabase=15517;Expression=AK063568;TENOR=Os04t0107900-02;KEGG=Os04t0107900-02
Chr04	irgsp1_rep	five_prime_UTR	483241	483372	.	+	.	Parent=Os04t0107900-02
Chr04	irgsp1_rep	CDS	483373	483519	.	+	0	Parent=Os04t0107900-02
Chr04	irgsp1_rep	CDS	483669	483810	.	+	0	Parent=Os04t0107900-02
Chr04	irgsp1_rep	CDS	483903	484360	.	+	2	Parent=Os04t0107900-02
Chr04	irgsp1_rep	mRNA	483439	485946	.	+	.	ID=Os04t0107900-03;Name=Os04t0107900-03;Locus_id=Os04g0107900;Oryzabase Gene Symbol Synonym(s)=Hsp90%2C OsHSP90.1;Oryzabase Gene Name Synonym(s)=Heat shock protein 90.1;Note=Similar to Heat shock protein 80.;Transcript_evidence=AK063751 (DDBJ%2C Best hit);ORF_evidence=NP_200414.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Biological Process: response to stress (GO:0006950),Molecular Function: ATP binding (GO:0005524),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein Hsp90 (IPR001404),ATPase-like%2C ATP-binding domain (IPR003594),Heat shock protein Hsp90%2C conserved site (IPR019805);NIAS_FLcDNA=001-120-G12;Oryzabase=15517;Expression=AK063751;TENOR=Os04t0107900-03;KEGG=Os04t0107900-03
Chr04	irgsp1_rep	CDS	483439	483519	.	+	0	Parent=Os04t0107900-03
Chr04	irgsp1_rep	CDS	483669	483695	.	+	0	Parent=Os04t0107900-03
Chr04	irgsp1_rep	CDS	485549	485725	.	+	0	Parent=Os04t0107900-03
Chr04	irgsp1_rep	three_prime_UTR	485726	485946	.	+	.	Parent=Os04t0107900-03
Chr04	irgsp1_rep	mRNA	485418	485978	.	+	.	ID=Os04t0107900-04;Name=Os04t0107900-04;Locus_id=Os04g0107900;Oryzabase Gene Symbol Synonym(s)=Hsp90%2C OsHSP90.1;Oryzabase Gene Name Synonym(s)=Heat shock protein 90.1;Note=Similar to Heat shock protein 82.;Transcript_evidence=AK063629 (DDBJ%2C Best hit);ORF_evidence=NP_001135416.2 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Biological Process: response to stress (GO:0006950),Molecular Function: ATP binding (GO:0005524),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein Hsp90 (IPR001404);NIAS_FLcDNA=001-118-F05;Oryzabase=15517;Expression=AK063629;TENOR=Os04t0107900-04;KEGG=Os04t0107900-04
Chr04	irgsp1_rep	five_prime_UTR	485418	485419	.	+	.	Parent=Os04t0107900-04
Chr04	irgsp1_rep	CDS	485420	485725	.	+	0	Parent=Os04t0107900-04
Chr04	irgsp1_rep	three_prime_UTR	485726	485978	.	+	.	Parent=Os04t0107900-04
Chr04	irgsp1_rep	mRNA	485604	485978	.	+	.	ID=Os04t0107900-05;Name=Os04t0107900-05;Locus_id=Os04g0107900;Oryzabase Gene Symbol Synonym(s)=Hsp90%2C OsHSP90.1;Oryzabase Gene Name Synonym(s)=Heat shock protein 90.1;Note=Non-protein coding transcript.;Transcript_evidence=AK105370 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-120-C06;Oryzabase=15517;TENOR=Os04t0107900-05;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	exon	485604	485978	.	+	.	Parent=Os04t0107900-05
Chr04	irgsp1_rep	mRNA	485272	485663	.	-	.	ID=Os04t0108101-00;Name=Os04t0108101-00;Locus_id=Os04g0108101;Note=Hypothetical protein.;Transcript_evidence=BT016887 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0108101-00
Chr04	irgsp1_rep	five_prime_UTR	485663	485663	.	-	.	Parent=Os04t0108101-00
Chr04	irgsp1_rep	CDS	485272	485662	.	-	0	Parent=Os04t0108101-00
Chr04	irgsp1_rep	mRNA	498163	500966	.	+	.	ID=Os04t0108300-01;Name=Os04t0108300-01;Locus_id=Os04g0108300;Note=Protein of unknown function DUF177 family protein.;Transcript_evidence=AK243466 (DDBJ%2C Best hit);ORF_evidence=NP_001173732.1 (RefSeq);InterPro=Protein of unknown function DUF177 (IPR003772);NIAS_FLcDNA=J100071K12;TENOR=Os04t0108300-01;KEGG=Os04t0108300-01
Chr04	irgsp1_rep	five_prime_UTR	498163	498384	.	+	.	Parent=Os04t0108300-01
Chr04	irgsp1_rep	CDS	498385	498575	.	+	0	Parent=Os04t0108300-01
Chr04	irgsp1_rep	CDS	500364	500793	.	+	1	Parent=Os04t0108300-01
Chr04	irgsp1_rep	three_prime_UTR	500794	500966	.	+	.	Parent=Os04t0108300-01
Chr04	irgsp1_rep	mRNA	521286	521708	.	+	.	ID=Os04t0108600-00;Name=Os04t0108600-00;Locus_id=Os04g0108600;Note=Similar to Sesquiterpene synthase (Fragment).;Transcript_evidence=FP092007 (DDBJ);ORF_evidence=B7TYK1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: lyase activity (GO:0016829);InterPro=Terpene synthase-like (IPR001906),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930);TENOR=Os04t0108600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	521286	521708	.	+	0	Parent=Os04t0108600-00
Chr04	irgsp1_rep	mRNA	545744	553541	.	-	.	ID=Os04t0109100-01;Name=Os04t0109100-01;Locus_id=Os04g0109100;CGSNL Gene Symbol=RLCK125;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 125;Oryzabase Gene Symbol Synonym(s)=OsRLCK125;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 125;Note=Concanavalin A-like lectin/glucanase domain containing protein.;Transcript_evidence=AK065935 (DDBJ%2C Best hit);ORF_evidence=Q25AD0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J013044A22;Oryzabase=18831;Expression=AK065935;TENOR=Os04t0109100-01;KEGG=Os04t0109100-01
Chr04	irgsp1_rep	five_prime_UTR	553526	553541	.	-	.	Parent=Os04t0109100-01
Chr04	irgsp1_rep	CDS	552172	553525	.	-	0	Parent=Os04t0109100-01
Chr04	irgsp1_rep	CDS	545849	546690	.	-	2	Parent=Os04t0109100-01
Chr04	irgsp1_rep	three_prime_UTR	545744	545848	.	-	.	Parent=Os04t0109100-01
Chr04	irgsp1_rep	mRNA	560485	562482	.	+	.	ID=Os04t0109400-00;Name=Os04t0109400-00;Locus_id=Os04g0109400;Note=Similar to H0201G08.3 protein.;Transcript_evidence=AK334099 (DDBJ);ORF_evidence=Q25AD2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os04t0109400-00
Chr04	irgsp1_rep	CDS	560485	562482	.	+	0	Parent=Os04t0109400-00
Chr04	irgsp1_rep	mRNA	568849	570185	.	-	.	ID=Os04t0109500-01;Name=Os04t0109500-01;Locus_id=Os04g0109500;Note=Legume lectin%2C beta domain containing protein.;Transcript_evidence=AK061191 (DDBJ%2C Best hit);ORF_evidence=Q25AD9 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Legume lectin%2C beta chain (IPR001220),Concanavalin A-like lectin/glucanase (IPR008985),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320);NIAS_FLcDNA=006-209-F07;Expression=AK061191;TENOR=Os04t0109500-01;KEGG=Os04t0109500-01
Chr04	irgsp1_rep	five_prime_UTR	570111	570185	.	-	.	Parent=Os04t0109500-01
Chr04	irgsp1_rep	CDS	569130	570110	.	-	0	Parent=Os04t0109500-01
Chr04	irgsp1_rep	three_prime_UTR	568849	569129	.	-	.	Parent=Os04t0109500-01
Chr04	irgsp1_rep	mRNA	586142	587523	.	+	.	ID=Os04t0109900-00;Name=Os04t0109900-00;Locus_id=Os04g0109900;Note=Similar to H0201G08.5 protein.;Transcript_evidence=EU961734 (DDBJ);ORF_evidence=Q25AD8 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);TENOR=Os04t0109900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	586142	586323	.	+	0	Parent=Os04t0109900-00
Chr04	irgsp1_rep	CDS	586408	586774	.	+	1	Parent=Os04t0109900-00
Chr04	irgsp1_rep	CDS	586849	587523	.	+	0	Parent=Os04t0109900-00
Chr04	irgsp1_rep	mRNA	586363	587505	.	-	.	ID=Os04t0110000-00;Name=Os04t0110000-00;Locus_id=Os04g0110000;Note=Hypothetical protein.;Transcript_evidence=tplb0040n23 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0110000-00
Chr04	irgsp1_rep	five_prime_UTR	587472	587505	.	-	.	Parent=Os04t0110000-00
Chr04	irgsp1_rep	CDS	587157	587471	.	-	0	Parent=Os04t0110000-00
Chr04	irgsp1_rep	three_prime_UTR	586831	587156	.	-	.	Parent=Os04t0110000-00
Chr04	irgsp1_rep	three_prime_UTR	586363	586758	.	-	.	Parent=Os04t0110000-00
Chr04	irgsp1_rep	mRNA	593362	594453	.	-	.	ID=Os04t0110100-01;Name=Os04t0110100-01;Locus_id=Os04g0110100;RAP-DB Gene Symbol Synonym(s)=BLEC-Str8;Note=&beta%3B-Lectin domain protein%2C Salt stress response;Transcript_evidence=AK062396;ORF_evidence=Q0JFE7;GO=Molecular Function: carbohydrate binding (GO:0030246);InterPro=Concanavalin A-like lectin/glucanase domain superfamily (IPR013320),Legume lectin domain (IPR001220);NIAS_FLcDNA=001-102-D08;Manual Curation=September 3%2C 2020;Literature_PMID=21725856;Expression=AK062396;TENOR=Os04t0110100-01;KEGG=Os04t0110100-01
Chr04	irgsp1_rep	five_prime_UTR	594442	594453	.	-	.	Parent=Os04t0110100-01
Chr04	irgsp1_rep	CDS	593503	594441	.	-	0	Parent=Os04t0110100-01
Chr04	irgsp1_rep	three_prime_UTR	593362	593502	.	-	.	Parent=Os04t0110100-01
Chr04	irgsp1_rep	mRNA	599975	600881	.	+	.	ID=Os04t0110200-01;Name=Os04t0110200-01;Locus_id=Os04g0110200;Note=Similar to H0201G08.7 protein.;Transcript_evidence=AK070186 (DDBJ%2C Best hit);ORF_evidence=Q25AD6 (UniProt);NIAS_FLcDNA=J023045L10;Expression=AK070186;TENOR=Os04t0110200-01;KEGG=Os04t0110200-01
Chr04	irgsp1_rep	five_prime_UTR	599975	600062	.	+	.	Parent=Os04t0110200-01
Chr04	irgsp1_rep	CDS	600063	600659	.	+	0	Parent=Os04t0110200-01
Chr04	irgsp1_rep	three_prime_UTR	600660	600881	.	+	.	Parent=Os04t0110200-01
Chr04	irgsp1_rep	mRNA	602294	608862	.	+	.	ID=Os04t0110300-01;Name=Os04t0110300-01;Locus_id=Os04g0110300;Oryzabase Gene Symbol Synonym(s)=OsCHB704%2C CHB704;Oryzabase Gene Name Synonym(s)=SWIRM domain-containing protein CHB704;Note=Similar to H0201G08.8 protein.;Transcript_evidence=AK073160 (DDBJ%2C Best hit);ORF_evidence=Q25AD5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=SWIRM (IPR007526),Homeodomain-like (IPR009057),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=J033020I01;Oryzabase=12519;TENOR=Os04t0110300-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	602294	602303	.	+	.	Parent=Os04t0110300-01
Chr04	irgsp1_rep	CDS	602304	602643	.	+	0	Parent=Os04t0110300-01
Chr04	irgsp1_rep	CDS	604099	604640	.	+	2	Parent=Os04t0110300-01
Chr04	irgsp1_rep	CDS	605846	605911	.	+	0	Parent=Os04t0110300-01
Chr04	irgsp1_rep	three_prime_UTR	605912	606444	.	+	.	Parent=Os04t0110300-01
Chr04	irgsp1_rep	three_prime_UTR	606535	606701	.	+	.	Parent=Os04t0110300-01
Chr04	irgsp1_rep	three_prime_UTR	606784	607313	.	+	.	Parent=Os04t0110300-01
Chr04	irgsp1_rep	three_prime_UTR	608058	608221	.	+	.	Parent=Os04t0110300-01
Chr04	irgsp1_rep	three_prime_UTR	608364	608862	.	+	.	Parent=Os04t0110300-01
Chr04	irgsp1_rep	mRNA	602300	608876	.	+	.	ID=Os04t0110300-02;Name=Os04t0110300-02;Locus_id=Os04g0110300;Oryzabase Gene Symbol Synonym(s)=OsCHB704%2C CHB704;Oryzabase Gene Name Synonym(s)=SWIRM domain-containing protein CHB704;Note=Myb%2C DNA-binding domain containing protein.;Transcript_evidence=AK063994 (DDBJ%2C Best hit);ORF_evidence=Q25AD5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C ZZ-type (IPR000433),SANT domain%2C DNA binding (IPR001005),SWIRM (IPR007526),Homeodomain-like (IPR009057),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),SANT%2C eukarya (IPR017884);NIAS_FLcDNA=001-124-E10;Oryzabase=12519;TENOR=Os04t0110300-02;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	602300	602303	.	+	.	Parent=Os04t0110300-02
Chr04	irgsp1_rep	CDS	602304	602643	.	+	0	Parent=Os04t0110300-02
Chr04	irgsp1_rep	CDS	604099	604640	.	+	2	Parent=Os04t0110300-02
Chr04	irgsp1_rep	CDS	605755	606444	.	+	0	Parent=Os04t0110300-02
Chr04	irgsp1_rep	CDS	606535	606701	.	+	0	Parent=Os04t0110300-02
Chr04	irgsp1_rep	CDS	606784	607313	.	+	1	Parent=Os04t0110300-02
Chr04	irgsp1_rep	CDS	608058	608221	.	+	2	Parent=Os04t0110300-02
Chr04	irgsp1_rep	CDS	608364	608591	.	+	0	Parent=Os04t0110300-02
Chr04	irgsp1_rep	three_prime_UTR	608592	608876	.	+	.	Parent=Os04t0110300-02
Chr04	irgsp1_rep	mRNA	606433	608571	.	-	.	ID=Os04t0110350-01;Name=Os04t0110350-01;Locus_id=Os04g0110350;Note=Hypothetical gene.;Transcript_evidence=AK240966 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065046G19;TENOR=Os04t0110350-01;KEGG=Os04t0110350-01
Chr04	irgsp1_rep	five_prime_UTR	608570	608571	.	-	.	Parent=Os04t0110350-01
Chr04	irgsp1_rep	CDS	608339	608569	.	-	0	Parent=Os04t0110350-01
Chr04	irgsp1_rep	three_prime_UTR	606433	608338	.	-	.	Parent=Os04t0110350-01
Chr04	irgsp1_rep	mRNA	610122	612879	.	+	.	ID=Os04t0110400-01;Name=Os04t0110400-01;Locus_id=Os04g0110400;Note=Similar to H0201G08.9 protein.;Transcript_evidence=AK288127 (DDBJ%2C Best hit);ORF_evidence=Q25AD4 (UniProt);InterPro=Domain of unknown function DUF303%2C acetylesterase putative (IPR005181),Esterase%2C SGNH hydrolase-type (IPR013830);NIAS_FLcDNA=J080092F24;TENOR=Os04t0110400-01;KEGG=Os04t0110400-01
Chr04	irgsp1_rep	five_prime_UTR	610122	610165	.	+	.	Parent=Os04t0110400-01
Chr04	irgsp1_rep	CDS	610166	610810	.	+	0	Parent=Os04t0110400-01
Chr04	irgsp1_rep	CDS	612487	612699	.	+	0	Parent=Os04t0110400-01
Chr04	irgsp1_rep	three_prime_UTR	612700	612879	.	+	.	Parent=Os04t0110400-01
Chr04	irgsp1_rep	mRNA	613789	616346	.	-	.	ID=Os04t0110500-02;Name=Os04t0110500-02;Locus_id=Os04g0110500;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK103144 (DDBJ%2C Best hit),AK073722 (DDBJ%2C Best hit);ORF_evidence=Q25AD3 (UniProt);NIAS_FLcDNA=J033120H12,J033060P16;Expression=AK103144;TENOR=Os04t0110500-02;KEGG=Os04t0110500-02
Chr04	irgsp1_rep	five_prime_UTR	616138	616346	.	-	.	Parent=Os04t0110500-02
Chr04	irgsp1_rep	CDS	614542	616137	.	-	0	Parent=Os04t0110500-02
Chr04	irgsp1_rep	three_prime_UTR	613789	614541	.	-	.	Parent=Os04t0110500-02
Chr04	irgsp1_rep	mRNA	617514	622710	.	-	.	ID=Os04t0110600-01;Name=Os04t0110600-01;Locus_id=Os04g0110600;RAP-DB Gene Symbol Synonym(s)=OsSTL1;RAP-DB Gene Name Synonym(s)=salt tolerance level 1;CGSNL Gene Symbol=STL1;CGSNL Gene Name=SALT TOLERANCE LEVEL 1;Oryzabase Gene Symbol Synonym(s)=SRZ4%2C OsSRZ4%2C OsSTL1;Oryzabase Gene Name Synonym(s)=stress repressive zinc finger protein 4%2C salt tolerance level 1;Note=Homolog of Arabidopsis SRP1 (Stress associated RNA-binding protein 1)%2C Salt tolerance;Transcript_evidence=AK065187;ORF_evidence=Q7XXF2;InterPro=Zinc finger%2C RanBP2-type superfamily (IPR036443),Zinc finger%2C RanBP2-type (IPR001876);NIAS_FLcDNA=J013002E01;Manual Curation=July 8%2C 2020;Literature_PMID=32561778;Oryzabase=15133;TENOR=Os04t0110600-01
Chr04	irgsp1_rep	five_prime_UTR	621538	622710	.	-	.	Parent=Os04t0110600-01
Chr04	irgsp1_rep	CDS	621232	621537	.	-	0	Parent=Os04t0110600-01
Chr04	irgsp1_rep	CDS	620660	620738	.	-	0	Parent=Os04t0110600-01
Chr04	irgsp1_rep	CDS	620097	620188	.	-	2	Parent=Os04t0110600-01
Chr04	irgsp1_rep	CDS	619860	620008	.	-	0	Parent=Os04t0110600-01
Chr04	irgsp1_rep	CDS	618741	618818	.	-	1	Parent=Os04t0110600-01
Chr04	irgsp1_rep	CDS	617944	617989	.	-	1	Parent=Os04t0110600-01
Chr04	irgsp1_rep	three_prime_UTR	617514	617943	.	-	.	Parent=Os04t0110600-01
Chr04	irgsp1_rep	mRNA	626696	627645	.	-	.	ID=Os04t0110700-01;Name=Os04t0110700-01;Locus_id=Os04g0110700;Note=Hypothetical gene.;Transcript_evidence=AK071284 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023083P09;Expression=AK071284;TENOR=Os04t0110700-01;KEGG=Os04t0110700-01
Chr04	irgsp1_rep	five_prime_UTR	627395	627645	.	-	.	Parent=Os04t0110700-01
Chr04	irgsp1_rep	CDS	627181	627394	.	-	0	Parent=Os04t0110700-01
Chr04	irgsp1_rep	CDS	627056	627063	.	-	2	Parent=Os04t0110700-01
Chr04	irgsp1_rep	three_prime_UTR	626696	627055	.	-	.	Parent=Os04t0110700-01
Chr04	irgsp1_rep	mRNA	639804	643247	.	-	.	ID=Os04t0111100-00;Name=Os04t0111100-00;Locus_id=Os04g0111100;Note=Similar to H0215A08.1 protein.;Transcript_evidence=tplb0040h11 (Wheat FLcDNA);ORF_evidence=Q01N41 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os04t0111100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	641501	643247	.	-	0	Parent=Os04t0111100-00
Chr04	irgsp1_rep	CDS	639804	641374	.	-	2	Parent=Os04t0111100-00
Chr04	irgsp1_rep	mRNA	646206	647358	.	-	.	ID=Os04t0111200-01;Name=Os04t0111200-01;Locus_id=Os04g0111200;Note=Similar to ATP sulfurylase (Fragment).;Transcript_evidence=AK105831 (DDBJ%2C Best hit);ORF_evidence=Q01N37 (UniProt);GO=Biological Process: sulfate assimilation (GO:0000103),Molecular Function: sulfate adenylyltransferase (ATP) activity (GO:0004781);InterPro=Sulphate adenylyltransferase (IPR002650),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=001-203-E07;Expression=AK105831;TENOR=Os04t0111200-01;KEGG=Os04t0111200-01 (EC:2.7.1.25%2C EC:2.7.7.4)
Chr04	irgsp1_rep	five_prime_UTR	647358	647358	.	-	.	Parent=Os04t0111200-01
Chr04	irgsp1_rep	CDS	647154	647357	.	-	0	Parent=Os04t0111200-01
Chr04	irgsp1_rep	CDS	646824	647084	.	-	0	Parent=Os04t0111200-01
Chr04	irgsp1_rep	CDS	646624	646710	.	-	0	Parent=Os04t0111200-01
Chr04	irgsp1_rep	CDS	646416	646541	.	-	0	Parent=Os04t0111200-01
Chr04	irgsp1_rep	three_prime_UTR	646206	646415	.	-	.	Parent=Os04t0111200-01
Chr04	irgsp1_rep	mRNA	647538	650068	.	-	.	ID=Os04t0111225-00;Name=Os04t0111225-00;Locus_id=Os04g0111225;Note=Similar to H0215A08.5 protein.;Transcript_evidence=CT836483 (DDBJ%2C Best hit);ORF_evidence=Q01N37 (UniProt);InterPro=PUA-like domain (IPR015947);TENOR=Os04t0111225-00;KEGG=Os04t0111225-00 (EC:2.7.1.25%2C EC:2.7.7.4)
Chr04	irgsp1_rep	five_prime_UTR	650067	650068	.	-	.	Parent=Os04t0111225-00
Chr04	irgsp1_rep	CDS	649495	650066	.	-	0	Parent=Os04t0111225-00
Chr04	irgsp1_rep	CDS	647538	647559	.	-	1	Parent=Os04t0111225-00
Chr04	irgsp1_rep	mRNA	649031	650373	.	+	.	ID=Os04t0111250-01;Name=Os04t0111250-01;Locus_id=Os04g0111250;Note=Conserved hypothetical protein.;Transcript_evidence=AK241089 (DDBJ%2C Best hit);ORF_evidence=NP_001173734.1 (RefSeq);NIAS_FLcDNA=J065075K03;TENOR=Os04t0111250-01;KEGG=Os04t0111250-01
Chr04	irgsp1_rep	five_prime_UTR	649031	649503	.	+	.	Parent=Os04t0111250-01
Chr04	irgsp1_rep	CDS	649504	650250	.	+	0	Parent=Os04t0111250-01
Chr04	irgsp1_rep	three_prime_UTR	650251	650373	.	+	.	Parent=Os04t0111250-01
Chr04	irgsp1_rep	mRNA	655428	655784	.	-	.	ID=Os04t0111301-00;Name=Os04t0111301-00;Locus_id=Os04g0111301;Note=Similar to Clavata-like kinase.;Transcript_evidence=AK371189 (DDBJ);ORF_evidence=Q2L3C7 (UniProt);TENOR=Os04t0111301-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	655760	655784	.	-	.	Parent=Os04t0111301-00
Chr04	irgsp1_rep	CDS	655496	655759	.	-	0	Parent=Os04t0111301-00
Chr04	irgsp1_rep	three_prime_UTR	655428	655495	.	-	.	Parent=Os04t0111301-00
Chr04	irgsp1_rep	mRNA	657792	658234	.	-	.	ID=Os04t0111350-01;Name=Os04t0111350-01;Locus_id=Os04g0111350;Note=Non-protein coding transcript.;Transcript_evidence=AK240767 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J053059B06;TENOR=Os04t0111350-01
Chr04	irgsp1_rep	exon	657792	658234	.	-	.	Parent=Os04t0111350-01
Chr04	irgsp1_rep	mRNA	661863	667540	.	-	.	ID=Os04t0111500-01;Name=Os04t0111500-01;Locus_id=Os04g0111500;CGSNL Gene Symbol=EXO70FX13;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX13;Oryzabase Gene Symbol Synonym(s)=OsEXO70FX13%2C OsExo70FX13%2C OrysaFX13_Exo70;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein FX13;Note=Similar to OSIGBa0127D24.4 protein.;Transcript_evidence=AK102051 (DDBJ%2C Best hit);ORF_evidence=Q01N59 (UniProt);NIAS_FLcDNA=J033082B12;Oryzabase=20355;TENOR=Os04t0111500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	667457	667540	.	-	.	Parent=Os04t0111500-01
Chr04	irgsp1_rep	five_prime_UTR	666899	667108	.	-	.	Parent=Os04t0111500-01
Chr04	irgsp1_rep	CDS	666474	666898	.	-	0	Parent=Os04t0111500-01
Chr04	irgsp1_rep	CDS	664167	664182	.	-	1	Parent=Os04t0111500-01
Chr04	irgsp1_rep	three_prime_UTR	661863	664166	.	-	.	Parent=Os04t0111500-01
Chr04	irgsp1_rep	mRNA	661317	667536	.	-	.	ID=Os04t0111500-02;Name=Os04t0111500-02;Locus_id=Os04g0111500;CGSNL Gene Symbol=EXO70FX13;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX13;Oryzabase Gene Symbol Synonym(s)=OsEXO70FX13%2C OsExo70FX13%2C OrysaFX13_Exo70;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein FX13;Note=Similar to OSIGBa0127D24.4 protein.;Transcript_evidence=AK072139 (DDBJ%2C Best hit);ORF_evidence=Q01N59 (UniProt);GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exo70 exocyst complex subunit (IPR004140),Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=J013121M10;Oryzabase=20355;Expression=AK072139;TENOR=Os04t0111500-02;KEGG=Os04t0111500-02
Chr04	irgsp1_rep	five_prime_UTR	666899	667536	.	-	.	Parent=Os04t0111500-02
Chr04	irgsp1_rep	CDS	666474	666898	.	-	0	Parent=Os04t0111500-02
Chr04	irgsp1_rep	CDS	661909	663052	.	-	1	Parent=Os04t0111500-02
Chr04	irgsp1_rep	three_prime_UTR	661317	661908	.	-	.	Parent=Os04t0111500-02
Chr04	irgsp1_rep	mRNA	683705	687690	.	-	.	ID=Os04t0111900-01;Name=Os04t0111900-01;Locus_id=Os04g0111900;Oryzabase Gene Symbol Synonym(s)=PIC22;Oryzabase Gene Name Synonym(s)=resistance gene analog PIC22;Note=Similar to Resistance gene analog PIC22 (Fragment).;Transcript_evidence=AK102078 (DDBJ%2C Best hit);ORF_evidence=Q01N57 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J033082I19;Oryzabase=14958;Expression=AK102078;TENOR=Os04t0111900-01;KEGG=Os04t0111900-01
Chr04	irgsp1_rep	five_prime_UTR	687591	687690	.	-	.	Parent=Os04t0111900-01
Chr04	irgsp1_rep	CDS	684291	687590	.	-	0	Parent=Os04t0111900-01
Chr04	irgsp1_rep	three_prime_UTR	684227	684290	.	-	.	Parent=Os04t0111900-01
Chr04	irgsp1_rep	three_prime_UTR	683705	684126	.	-	.	Parent=Os04t0111900-01
Chr04	irgsp1_rep	mRNA	681115	687685	.	-	.	ID=Os04t0111900-02;Name=Os04t0111900-02;Locus_id=Os04g0111900;Oryzabase Gene Symbol Synonym(s)=PIC22;Oryzabase Gene Name Synonym(s)=resistance gene analog PIC22;Note=Similar to Resistance gene analog PIC22 (Fragment).;Transcript_evidence=AK067211 (DDBJ%2C Best hit),AK121138 (DDBJ%2C Best hit);ORF_evidence=Q01N57 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013096B12,J023077F05;Oryzabase=14958;Expression=AK067211;TENOR=Os04t0111900-02;KEGG=Os04t0111900-02
Chr04	irgsp1_rep	five_prime_UTR	687591	687685	.	-	.	Parent=Os04t0111900-02
Chr04	irgsp1_rep	CDS	684291	687590	.	-	0	Parent=Os04t0111900-02
Chr04	irgsp1_rep	three_prime_UTR	684227	684290	.	-	.	Parent=Os04t0111900-02
Chr04	irgsp1_rep	three_prime_UTR	681115	682846	.	-	.	Parent=Os04t0111900-02
Chr04	irgsp1_rep	mRNA	693552	694897	.	+	.	ID=Os04t0112000-01;Name=Os04t0112000-01;Locus_id=Os04g0112000;Note=Hypothetical protein.;Transcript_evidence=AK073646 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033054M12;Expression=AK073646;TENOR=Os04t0112000-01;KEGG=Os04t0112000-01
Chr04	irgsp1_rep	five_prime_UTR	693552	693641	.	+	.	Parent=Os04t0112000-01
Chr04	irgsp1_rep	five_prime_UTR	693732	693759	.	+	.	Parent=Os04t0112000-01
Chr04	irgsp1_rep	five_prime_UTR	693870	694462	.	+	.	Parent=Os04t0112000-01
Chr04	irgsp1_rep	CDS	694463	694795	.	+	0	Parent=Os04t0112000-01
Chr04	irgsp1_rep	three_prime_UTR	694796	694897	.	+	.	Parent=Os04t0112000-01
Chr04	irgsp1_rep	mRNA	692896	695278	.	-	.	ID=Os04t0112100-01;Name=Os04t0112100-01;Locus_id=Os04g0112100;Oryzabase Gene Name Synonym(s)=Putative disease resistance protein RGA4;Note=NB-ARC domain containing protein.;Transcript_evidence=AK243014 (DDBJ%2C Best hit);ORF_evidence=Q01N56 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J090098F18;Oryzabase=22557;TENOR=Os04t0112100-01;KEGG=Os04t0112100-01
Chr04	irgsp1_rep	five_prime_UTR	694926	695278	.	-	.	Parent=Os04t0112100-01
Chr04	irgsp1_rep	five_prime_UTR	694790	694814	.	-	.	Parent=Os04t0112100-01
Chr04	irgsp1_rep	CDS	693770	694789	.	-	0	Parent=Os04t0112100-01
Chr04	irgsp1_rep	three_prime_UTR	693353	693769	.	-	.	Parent=Os04t0112100-01
Chr04	irgsp1_rep	three_prime_UTR	692896	693212	.	-	.	Parent=Os04t0112100-01
Chr04	irgsp1_rep	mRNA	706806	711491	.	-	.	ID=Os04t0112200-00;Name=Os04t0112200-00;Locus_id=Os04g0112200;Oryzabase Gene Symbol Synonym(s)=Orysa%3BE2F4%2C OsE2F4;Oryzabase Gene Name Synonym(s)=E2F transcription factor 4;Note=Similar to OSIGBa0127D24.8 protein.;Transcript_evidence=EU971499 (DDBJ);ORF_evidence=Q01N55 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: transcription factor complex (GO:0005667),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Transcription factor E2F/dimerisation partner (TDP) (IPR003316),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),E2F Family (IPR015633);Oryzabase=13313;TENOR=Os04t0112200-00;KEGG=Os04t0112200-00
Chr04	irgsp1_rep	CDS	711081	711491	.	-	0	Parent=Os04t0112200-00
Chr04	irgsp1_rep	CDS	710013	710166	.	-	0	Parent=Os04t0112200-00
Chr04	irgsp1_rep	CDS	709835	709891	.	-	2	Parent=Os04t0112200-00
Chr04	irgsp1_rep	CDS	709676	709761	.	-	2	Parent=Os04t0112200-00
Chr04	irgsp1_rep	CDS	709470	709558	.	-	0	Parent=Os04t0112200-00
Chr04	irgsp1_rep	CDS	709333	709387	.	-	1	Parent=Os04t0112200-00
Chr04	irgsp1_rep	CDS	708315	708367	.	-	0	Parent=Os04t0112200-00
Chr04	irgsp1_rep	CDS	708179	708229	.	-	1	Parent=Os04t0112200-00
Chr04	irgsp1_rep	CDS	708054	708102	.	-	1	Parent=Os04t0112200-00
Chr04	irgsp1_rep	CDS	707907	707972	.	-	0	Parent=Os04t0112200-00
Chr04	irgsp1_rep	CDS	707724	707818	.	-	0	Parent=Os04t0112200-00
Chr04	irgsp1_rep	CDS	707415	707625	.	-	1	Parent=Os04t0112200-00
Chr04	irgsp1_rep	CDS	707270	707335	.	-	0	Parent=Os04t0112200-00
Chr04	irgsp1_rep	three_prime_UTR	706806	707269	.	-	.	Parent=Os04t0112200-00
Chr04	irgsp1_rep	mRNA	715787	722261	.	-	.	ID=Os04t0112300-01;Name=Os04t0112300-01;Locus_id=Os04g0112300;Note=Eukaryotic initiation factor 3%2C gamma subunit family protein.;Transcript_evidence=AK073153 (DDBJ%2C Best hit);ORF_evidence=Q01N54 (UniProt);GO=Biological Process: translational initiation (GO:0006413),Biological Process: regulation of translational initiation (GO:0006446),Molecular Function: translation initiation factor activity (GO:0003743);InterPro=Eukaryotic initiation factor 3%2C gamma subunit (IPR007316),tRNA (adenine-N(1)-)-methyltransferase%2C non-catalytic TRM6 subunit (IPR017423);NIAS_FLcDNA=J033005K19;Expression=AK073153;TENOR=Os04t0112300-01;KEGG=Os04t0112300-01
Chr04	irgsp1_rep	five_prime_UTR	722173	722261	.	-	.	Parent=Os04t0112300-01
Chr04	irgsp1_rep	CDS	722075	722172	.	-	0	Parent=Os04t0112300-01
Chr04	irgsp1_rep	CDS	721863	721984	.	-	1	Parent=Os04t0112300-01
Chr04	irgsp1_rep	CDS	720616	720736	.	-	2	Parent=Os04t0112300-01
Chr04	irgsp1_rep	CDS	720438	720519	.	-	1	Parent=Os04t0112300-01
Chr04	irgsp1_rep	CDS	720281	720351	.	-	0	Parent=Os04t0112300-01
Chr04	irgsp1_rep	CDS	719092	719133	.	-	1	Parent=Os04t0112300-01
Chr04	irgsp1_rep	CDS	718810	718934	.	-	1	Parent=Os04t0112300-01
Chr04	irgsp1_rep	CDS	717967	718060	.	-	2	Parent=Os04t0112300-01
Chr04	irgsp1_rep	CDS	717225	717487	.	-	1	Parent=Os04t0112300-01
Chr04	irgsp1_rep	CDS	717044	717152	.	-	2	Parent=Os04t0112300-01
Chr04	irgsp1_rep	CDS	716856	716961	.	-	1	Parent=Os04t0112300-01
Chr04	irgsp1_rep	CDS	716680	716766	.	-	0	Parent=Os04t0112300-01
Chr04	irgsp1_rep	CDS	716099	716206	.	-	0	Parent=Os04t0112300-01
Chr04	irgsp1_rep	three_prime_UTR	715787	716098	.	-	.	Parent=Os04t0112300-01
Chr04	irgsp1_rep	mRNA	715786	722218	.	-	.	ID=Os04t0112300-02;Name=Os04t0112300-02;Locus_id=Os04g0112300;Note=Eukaryotic initiation factor 3%2C gamma subunit family protein.;Transcript_evidence=AK121833 (DDBJ%2C Best hit);ORF_evidence=Q01N54 (UniProt);GO=Biological Process: translational initiation (GO:0006413),Biological Process: regulation of translational initiation (GO:0006446),Molecular Function: translation initiation factor activity (GO:0003743);InterPro=Eukaryotic initiation factor 3%2C gamma subunit (IPR007316),tRNA (adenine-N(1)-)-methyltransferase%2C non-catalytic TRM6 subunit (IPR017423);NIAS_FLcDNA=J033099O19;TENOR=Os04t0112300-02
Chr04	irgsp1_rep	five_prime_UTR	722173	722218	.	-	.	Parent=Os04t0112300-02
Chr04	irgsp1_rep	CDS	722075	722172	.	-	0	Parent=Os04t0112300-02
Chr04	irgsp1_rep	CDS	721863	721984	.	-	1	Parent=Os04t0112300-02
Chr04	irgsp1_rep	CDS	720616	720736	.	-	2	Parent=Os04t0112300-02
Chr04	irgsp1_rep	CDS	720438	720519	.	-	1	Parent=Os04t0112300-02
Chr04	irgsp1_rep	CDS	720281	720351	.	-	0	Parent=Os04t0112300-02
Chr04	irgsp1_rep	CDS	719092	719133	.	-	1	Parent=Os04t0112300-02
Chr04	irgsp1_rep	CDS	718810	718934	.	-	1	Parent=Os04t0112300-02
Chr04	irgsp1_rep	CDS	717967	718060	.	-	2	Parent=Os04t0112300-02
Chr04	irgsp1_rep	CDS	717225	717487	.	-	1	Parent=Os04t0112300-02
Chr04	irgsp1_rep	CDS	717044	717152	.	-	2	Parent=Os04t0112300-02
Chr04	irgsp1_rep	CDS	716856	716961	.	-	1	Parent=Os04t0112300-02
Chr04	irgsp1_rep	CDS	716680	716766	.	-	0	Parent=Os04t0112300-02
Chr04	irgsp1_rep	CDS	716099	716206	.	-	0	Parent=Os04t0112300-02
Chr04	irgsp1_rep	three_prime_UTR	715786	716098	.	-	.	Parent=Os04t0112300-02
Chr04	irgsp1_rep	mRNA	748428	754467	.	+	.	ID=Os04t0112533-01;Name=Os04t0112533-01;Locus_id=Os04g0112533;Note=Conserved hypothetical protein.;Transcript_evidence=AK288337 (DDBJ%2C Best hit);ORF_evidence=NP_001175735.1 (RefSeq);NIAS_FLcDNA=J090023C14;TENOR=Os04t0112533-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	748428	753240	.	+	.	Parent=Os04t0112533-01
Chr04	irgsp1_rep	CDS	753241	753459	.	+	0	Parent=Os04t0112533-01
Chr04	irgsp1_rep	three_prime_UTR	753460	754467	.	+	.	Parent=Os04t0112533-01
Chr04	irgsp1_rep	mRNA	784954	789872	.	+	.	ID=Os04t0112766-01;Name=Os04t0112766-01;Locus_id=Os04g0112766;Note=Hypothetical protein.;Transcript_evidence=AK288327 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090022H22;TENOR=Os04t0112766-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	784954	786204	.	+	.	Parent=Os04t0112766-01
Chr04	irgsp1_rep	CDS	786205	786489	.	+	0	Parent=Os04t0112766-01
Chr04	irgsp1_rep	three_prime_UTR	786490	789872	.	+	.	Parent=Os04t0112766-01
Chr04	irgsp1_rep	mRNA	793538	799310	.	-	.	ID=Os04t0113000-01;Name=Os04t0113000-01;Locus_id=Os04g0113000;Oryzabase Gene Symbol Synonym(s)=OsFbox179%2C Os_F0161;Oryzabase Gene Name Synonym(s)=F-box protein 179;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK105252 (DDBJ%2C Best hit);ORF_evidence=Q01MQ2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=001-114-D01;Oryzabase=16968;Expression=AK105252;TENOR=Os04t0113000-01;KEGG=Os04t0113000-01
Chr04	irgsp1_rep	five_prime_UTR	798987	799310	.	-	.	Parent=Os04t0113000-01
Chr04	irgsp1_rep	five_prime_UTR	795901	796232	.	-	.	Parent=Os04t0113000-01
Chr04	irgsp1_rep	CDS	795131	795900	.	-	0	Parent=Os04t0113000-01
Chr04	irgsp1_rep	CDS	794380	795025	.	-	1	Parent=Os04t0113000-01
Chr04	irgsp1_rep	three_prime_UTR	794348	794379	.	-	.	Parent=Os04t0113000-01
Chr04	irgsp1_rep	three_prime_UTR	793538	793716	.	-	.	Parent=Os04t0113000-01
Chr04	irgsp1_rep	mRNA	794959	799305	.	-	.	ID=Os04t0113000-02;Name=Os04t0113000-02;Locus_id=Os04g0113000;Oryzabase Gene Symbol Synonym(s)=OsFbox179%2C Os_F0161;Oryzabase Gene Name Synonym(s)=F-box protein 179;Note=Similar to OSIGBa0102B11.4 protein.;Transcript_evidence=AK072963 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023150P07;Oryzabase=16968;Expression=AK072963;TENOR=Os04t0113000-02;KEGG=Os04t0113000-02
Chr04	irgsp1_rep	five_prime_UTR	798987	799305	.	-	.	Parent=Os04t0113000-02
Chr04	irgsp1_rep	five_prime_UTR	796014	796232	.	-	.	Parent=Os04t0113000-02
Chr04	irgsp1_rep	five_prime_UTR	795901	795935	.	-	.	Parent=Os04t0113000-02
Chr04	irgsp1_rep	CDS	795127	795900	.	-	0	Parent=Os04t0113000-02
Chr04	irgsp1_rep	three_prime_UTR	794959	795126	.	-	.	Parent=Os04t0113000-02
Chr04	irgsp1_rep	mRNA	794959	797332	.	-	.	ID=Os04t0113000-03;Name=Os04t0113000-03;Locus_id=Os04g0113000;Oryzabase Gene Symbol Synonym(s)=OsFbox179%2C Os_F0161;Oryzabase Gene Name Synonym(s)=F-box protein 179;Note=Similar to OSIGBa0102B11.4 protein.;Transcript_evidence=AK058718 (DDBJ%2C Best hit);ORF_evidence=longestORF;GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=001-019-E06;Oryzabase=16968;Expression=AK058718;TENOR=Os04t0113000-03;KEGG=Os04t0113000-03
Chr04	irgsp1_rep	five_prime_UTR	797291	797332	.	-	.	Parent=Os04t0113000-03
Chr04	irgsp1_rep	five_prime_UTR	797074	797131	.	-	.	Parent=Os04t0113000-03
Chr04	irgsp1_rep	five_prime_UTR	796041	796232	.	-	.	Parent=Os04t0113000-03
Chr04	irgsp1_rep	five_prime_UTR	795901	795935	.	-	.	Parent=Os04t0113000-03
Chr04	irgsp1_rep	CDS	795127	795900	.	-	0	Parent=Os04t0113000-03
Chr04	irgsp1_rep	three_prime_UTR	794959	795126	.	-	.	Parent=Os04t0113000-03
Chr04	irgsp1_rep	mRNA	796076	798794	.	+	.	ID=Os04t0113100-00;Name=Os04t0113100-00;Locus_id=Os04g0113100;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=BT066798 (DDBJ);ORF_evidence=A2ZP02 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os04t0113100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	796076	796239	.	+	.	Parent=Os04t0113100-00
Chr04	irgsp1_rep	five_prime_UTR	797160	797261	.	+	.	Parent=Os04t0113100-00
Chr04	irgsp1_rep	CDS	797262	797463	.	+	0	Parent=Os04t0113100-00
Chr04	irgsp1_rep	CDS	797634	798361	.	+	2	Parent=Os04t0113100-00
Chr04	irgsp1_rep	three_prime_UTR	798362	798794	.	+	.	Parent=Os04t0113100-00
Chr04	irgsp1_rep	mRNA	835516	837306	.	+	.	ID=Os04t0113800-01;Name=Os04t0113800-01;Locus_id=Os04g0113800;Note=Hypothetical conserved gene.;Transcript_evidence=AK058237 (DDBJ%2C Best hit);ORF_evidence=B8AUA5 (UniProt);NIAS_FLcDNA=001-011-E02;Expression=AK058237;TENOR=Os04t0113800-01;KEGG=Os04t0113800-01
Chr04	irgsp1_rep	five_prime_UTR	835516	835516	.	+	.	Parent=Os04t0113800-01
Chr04	irgsp1_rep	CDS	835517	835812	.	+	0	Parent=Os04t0113800-01
Chr04	irgsp1_rep	CDS	837068	837071	.	+	1	Parent=Os04t0113800-01
Chr04	irgsp1_rep	three_prime_UTR	837072	837306	.	+	.	Parent=Os04t0113800-01
Chr04	irgsp1_rep	mRNA	868089	868779	.	-	.	ID=Os04t0114300-00;Name=Os04t0114300-00;Locus_id=Os04g0114300;Note=Conserved hypothetical protein.;Transcript_evidence=AK359514 (DDBJ);ORF_evidence=A3AQ94 (UniProt);TENOR=Os04t0114300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	868183	868779	.	-	0	Parent=Os04t0114300-00
Chr04	irgsp1_rep	three_prime_UTR	868089	868182	.	-	.	Parent=Os04t0114300-00
Chr04	irgsp1_rep	mRNA	885541	886249	.	+	.	ID=Os04t0114801-00;Name=Os04t0114801-00;Locus_id=Os04g0114801;Note=Similar to OSIGBa0112G01.4 protein.;Transcript_evidence=FP099111 (DDBJ);ORF_evidence=Q01MP9 (UniProt);TENOR=Os04t0114801-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	885541	885754	.	+	0	Parent=Os04t0114801-00
Chr04	irgsp1_rep	CDS	885972	886249	.	+	2	Parent=Os04t0114801-00
Chr04	irgsp1_rep	mRNA	894998	895150	.	+	.	ID=Os04t0114950-00;Name=Os04t0114950-00;Locus_id=Os04g0114950;Note=Non-protein coding transcript.;Transcript_evidence=EU946325 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0114950-00
Chr04	irgsp1_rep	exon	894998	895150	.	+	.	Parent=Os04t0114950-00
Chr04	irgsp1_rep	mRNA	899618	900877	.	-	.	ID=Os04t0115200-01;Name=Os04t0115200-01;Locus_id=Os04g0115200;Note=Conserved hypothetical protein.;Transcript_evidence=AK241850 (DDBJ%2C Best hit);ORF_evidence=NP_001052040.2 (RefSeq);NIAS_FLcDNA=J065215C16;TENOR=Os04t0115200-01;KEGG=Os04t0115200-01
Chr04	irgsp1_rep	five_prime_UTR	900663	900877	.	-	.	Parent=Os04t0115200-01
Chr04	irgsp1_rep	CDS	900111	900662	.	-	0	Parent=Os04t0115200-01
Chr04	irgsp1_rep	three_prime_UTR	899618	900110	.	-	.	Parent=Os04t0115200-01
Chr04	irgsp1_rep	mRNA	906375	909802	.	+	.	ID=Os04t0115400-01;Name=Os04t0115400-01;Locus_id=Os04g0115400;Note=D111/G-patch domain containing protein.;Transcript_evidence=AK070523 (DDBJ%2C Best hit);ORF_evidence=Q01MP9 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676);InterPro=D111/G-patch (IPR000467);NIAS_FLcDNA=J023055J24;Expression=AK070523;TENOR=Os04t0115400-01;KEGG=Os04t0115400-01
Chr04	irgsp1_rep	five_prime_UTR	906375	906483	.	+	.	Parent=Os04t0115400-01
Chr04	irgsp1_rep	CDS	906484	906486	.	+	0	Parent=Os04t0115400-01
Chr04	irgsp1_rep	CDS	906559	906808	.	+	0	Parent=Os04t0115400-01
Chr04	irgsp1_rep	CDS	907912	908093	.	+	2	Parent=Os04t0115400-01
Chr04	irgsp1_rep	three_prime_UTR	908094	908425	.	+	.	Parent=Os04t0115400-01
Chr04	irgsp1_rep	three_prime_UTR	908573	908682	.	+	.	Parent=Os04t0115400-01
Chr04	irgsp1_rep	three_prime_UTR	908793	908943	.	+	.	Parent=Os04t0115400-01
Chr04	irgsp1_rep	three_prime_UTR	909396	909802	.	+	.	Parent=Os04t0115400-01
Chr04	irgsp1_rep	mRNA	913866	917650	.	+	.	ID=Os04t0115500-01;Name=Os04t0115500-01;Locus_id=Os04g0115500;RAP-DB Gene Symbol Synonym(s)=OsTIF1;RAP-DB Gene Name Synonym(s)=OsTAA1 transcriptional inhibition factor 1;Note=Transcriptional inhibitor of auxin biosynthesis%2C Regulation of distinct caryopses development in different branches;Transcript_evidence=Inferred from literature;ORF_evidence=Q0JFD1;GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Zinc finger C2H2-type (IPR013087);Manual Curation=October 28%2C 2020;Literature_PMID=33108367;TENOR=Os04t0115500-00;KEGG=Os04t0115500-00;Subcellular location=endoplasmic reticulum (GO:0005783),nucleus (GO:0005634) [IAA treatment]
Chr04	irgsp1_rep	five_prime_UTR	913866	913930	.	+	.	Parent=Os04t0115500-01
Chr04	irgsp1_rep	CDS	913931	914625	.	+	0	Parent=Os04t0115500-01
Chr04	irgsp1_rep	CDS	914705	914805	.	+	1	Parent=Os04t0115500-01
Chr04	irgsp1_rep	CDS	916780	917426	.	+	2	Parent=Os04t0115500-01
Chr04	irgsp1_rep	three_prime_UTR	917427	917650	.	+	.	Parent=Os04t0115500-01
Chr04	irgsp1_rep	mRNA	922561	928320	.	-	.	ID=Os04t0115600-01;Name=Os04t0115600-01;Locus_id=Os04g0115600;Note=Non-protein coding transcript.;Transcript_evidence=AK242015 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J075109I19;TENOR=Os04t0115600-01
Chr04	irgsp1_rep	exon	928170	928320	.	-	.	Parent=Os04t0115600-01
Chr04	irgsp1_rep	exon	927779	927925	.	-	.	Parent=Os04t0115600-01
Chr04	irgsp1_rep	exon	922989	923304	.	-	.	Parent=Os04t0115600-01
Chr04	irgsp1_rep	exon	922561	922981	.	-	.	Parent=Os04t0115600-01
Chr04	irgsp1_rep	mRNA	923372	926272	.	-	.	ID=Os04t0115650-00;Name=Os04t0115650-00;Locus_id=Os04g0115650;Oryzabase Gene Symbol Synonym(s)=Bph33;Oryzabase Gene Name Synonym(s)=BROWN PLANTHOPPER RESISTANCE 33;Note=Similar to OSIGBa0160I14.9 protein.;Transcript_evidence=BT039178 (DDBJ);ORF_evidence=Q01JR4 (UniProt);Oryzabase=22655;TENOR=Os04t0115650-00
Chr04	irgsp1_rep	CDS	923372	926272	.	-	0	Parent=Os04t0115650-00
Chr04	irgsp1_rep	mRNA	937896	943051	.	+	.	ID=Os04t0115700-01;Name=Os04t0115700-01;Locus_id=Os04g0115700;Note=Hypothetical protein.;Transcript_evidence=AK070444 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023052K11;Expression=AK070444;TENOR=Os04t0115700-01;KEGG=Os04t0115700-01
Chr04	irgsp1_rep	five_prime_UTR	937896	938130	.	+	.	Parent=Os04t0115700-01
Chr04	irgsp1_rep	five_prime_UTR	941881	942142	.	+	.	Parent=Os04t0115700-01
Chr04	irgsp1_rep	CDS	942143	942388	.	+	0	Parent=Os04t0115700-01
Chr04	irgsp1_rep	three_prime_UTR	942389	943051	.	+	.	Parent=Os04t0115700-01
Chr04	irgsp1_rep	mRNA	937900	940774	.	+	.	ID=Os04t0115700-02;Name=Os04t0115700-02;Locus_id=Os04g0115700;Note=Conserved hypothetical protein.;Transcript_evidence=AK072148 (DDBJ%2C Best hit);ORF_evidence=Q2QUW2 (UniProt);NIAS_FLcDNA=J013129D08;TENOR=Os04t0115700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	937900	939881	.	+	.	Parent=Os04t0115700-02
Chr04	irgsp1_rep	CDS	939882	940043	.	+	0	Parent=Os04t0115700-02
Chr04	irgsp1_rep	three_prime_UTR	940044	940774	.	+	.	Parent=Os04t0115700-02
Chr04	irgsp1_rep	mRNA	944632	946752	.	-	.	ID=Os04t0115800-01;Name=Os04t0115800-01;Locus_id=Os04g0115800;Note=Conserved hypothetical protein.;Transcript_evidence=AK107115 (DDBJ%2C Best hit);ORF_evidence=A3AQA2 (UniProt);NIAS_FLcDNA=002-124-A10;Expression=AK107115;TENOR=Os04t0115800-01;KEGG=Os04t0115800-01
Chr04	irgsp1_rep	five_prime_UTR	946751	946752	.	-	.	Parent=Os04t0115800-01
Chr04	irgsp1_rep	CDS	946085	946750	.	-	0	Parent=Os04t0115800-01
Chr04	irgsp1_rep	three_prime_UTR	945558	946084	.	-	.	Parent=Os04t0115800-01
Chr04	irgsp1_rep	three_prime_UTR	944632	945366	.	-	.	Parent=Os04t0115800-01
Chr04	irgsp1_rep	mRNA	959532	960017	.	-	.	ID=Os04t0115900-00;Name=Os04t0115900-00;Locus_id=Os04g0115900;Note=Hypothetical conserved gene.;Transcript_evidence=AK368656 (DDBJ);ORF_evidence=NP_001052045.2 (RefSeq);TENOR=Os04t0115900-00;KEGG=Os04t0115900-00
Chr04	irgsp1_rep	CDS	959532	960017	.	-	0	Parent=Os04t0115900-00
Chr04	irgsp1_rep	mRNA	967968	969679	.	-	.	ID=Os04t0116200-01;Name=Os04t0116200-01;Locus_id=Os04g0116200;Note=Protein of unknown function DUF827%2C plant family protein.;Transcript_evidence=AK064677 (DDBJ%2C Best hit);ORF_evidence=Q01MV9 (UniProt);NIAS_FLcDNA=002-115-G03;Expression=AK064677;TENOR=Os04t0116200-01;KEGG=Os04t0116200-01
Chr04	irgsp1_rep	five_prime_UTR	969639	969679	.	-	.	Parent=Os04t0116200-01
Chr04	irgsp1_rep	CDS	969453	969638	.	-	0	Parent=Os04t0116200-01
Chr04	irgsp1_rep	CDS	968178	968891	.	-	0	Parent=Os04t0116200-01
Chr04	irgsp1_rep	three_prime_UTR	967968	968177	.	-	.	Parent=Os04t0116200-01
Chr04	irgsp1_rep	mRNA	984543	987069	.	+	.	ID=Os04t0116600-01;Name=Os04t0116600-01;Locus_id=Os04g0116600;Note=Glucose/ribitol dehydrogenase family protein.;Transcript_evidence=AK064965 (DDBJ%2C Best hit);ORF_evidence=Q01MW5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013001B01;Oryzabase=21899;Expression=AK064965;TENOR=Os04t0116600-01;KEGG=Os04t0116600-01
Chr04	irgsp1_rep	five_prime_UTR	984543	984594	.	+	.	Parent=Os04t0116600-01
Chr04	irgsp1_rep	CDS	984595	985229	.	+	0	Parent=Os04t0116600-01
Chr04	irgsp1_rep	CDS	985946	986270	.	+	1	Parent=Os04t0116600-01
Chr04	irgsp1_rep	three_prime_UTR	986271	987069	.	+	.	Parent=Os04t0116600-01
Chr04	irgsp1_rep	mRNA	984899	986042	.	-	.	ID=Os04t0116650-00;Name=Os04t0116650-00;Locus_id=Os04g0116650;Note=Hypothetical protein.;Transcript_evidence=BT019228 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0116650-00
Chr04	irgsp1_rep	CDS	985922	986042	.	-	0	Parent=Os04t0116650-00
Chr04	irgsp1_rep	CDS	984899	985211	.	-	2	Parent=Os04t0116650-00
Chr04	irgsp1_rep	mRNA	997304	998883	.	+	.	ID=Os04t0116800-01;Name=Os04t0116800-01;Locus_id=Os04g0116800;Note=Similar to 3-ketoacyl-CoA synthase.;Transcript_evidence=AK119922 (DDBJ%2C Best hit);ORF_evidence=B9FD38 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: metabolic process (GO:0008152),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Very-long-chain 3-ketoacyl-CoA synthase (IPR012392),FAE1/Type III polyketide synthase-like protein (IPR013601),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);NIAS_FLcDNA=002-183-G08;Oryzabase=22565;TENOR=Os04t0116800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	997304	997364	.	+	.	Parent=Os04t0116800-01
Chr04	irgsp1_rep	CDS	997365	998654	.	+	0	Parent=Os04t0116800-01
Chr04	irgsp1_rep	three_prime_UTR	998655	998883	.	+	.	Parent=Os04t0116800-01
Chr04	irgsp1_rep	mRNA	999883	1002360	.	-	.	ID=Os04t0116900-00;Name=Os04t0116900-00;Locus_id=Os04g0116900;Note=Protein of unknown function DUF827%2C plant family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01MV9 (UniProt);TENOR=Os04t0116900-00;KEGG=Os04t0116900-00
Chr04	irgsp1_rep	CDS	1002190	1002360	.	-	0	Parent=Os04t0116900-00
Chr04	irgsp1_rep	CDS	999883	1000635	.	-	0	Parent=Os04t0116900-00
Chr04	irgsp1_rep	mRNA	1008146	1010166	.	-	.	ID=Os04t0117100-01;Name=Os04t0117100-01;Locus_id=Os04g0117100;Oryzabase Gene Symbol Synonym(s)=OsmtATPS1%2C mtATPS1;Oryzabase Gene Name Synonym(s)=mitochondrial proton-transporting ATP synthase 1;Note=ATPase%2C F0 complex%2C subunit E%2C mitochondrial domain containing protein.;Transcript_evidence=AK121763 (DDBJ%2C Best hit),AK060395 (DDBJ%2C Best hit);ORF_evidence=Q01MV8 (UniProt);GO=Biological Process: ATP synthesis coupled proton transport (GO:0015986),Cellular Component: mitochondrial proton-transporting ATP synthase complex%2C coupling factor F(o) (GO:0000276),Molecular Function: hydrogen ion transmembrane transporter activity (GO:0015078);InterPro=ATPase%2C F0 complex%2C subunit E%2C mitochondrial (IPR008386);NIAS_FLcDNA=J033090J17,001-010-B01;Oryzabase=20388;Expression=AK121763;TENOR=Os04t0117100-01;KEGG=Os04t0117100-01
Chr04	irgsp1_rep	five_prime_UTR	1010072	1010166	.	-	.	Parent=Os04t0117100-01
Chr04	irgsp1_rep	CDS	1010024	1010071	.	-	0	Parent=Os04t0117100-01
Chr04	irgsp1_rep	CDS	1009836	1009901	.	-	0	Parent=Os04t0117100-01
Chr04	irgsp1_rep	CDS	1008361	1008405	.	-	0	Parent=Os04t0117100-01
Chr04	irgsp1_rep	three_prime_UTR	1008146	1008360	.	-	.	Parent=Os04t0117100-01
Chr04	irgsp1_rep	mRNA	1011419	1014764	.	-	.	ID=Os04t0117150-00;Name=Os04t0117150-00;Locus_id=Os04g0117150;Note=Hypothetical conserved gene.;Transcript_evidence=AK110816 (DDBJ%2C Secondary hit);ORF_evidence=Q7XT13 (UniProt);Expression=AK110816;TENOR=Os04t0117150-00;KEGG=Os04t0117150-00
Chr04	irgsp1_rep	five_prime_UTR	1014500	1014764	.	-	.	Parent=Os04t0117150-00
Chr04	irgsp1_rep	five_prime_UTR	1012729	1012729	.	-	.	Parent=Os04t0117150-00
Chr04	irgsp1_rep	CDS	1012381	1012728	.	-	0	Parent=Os04t0117150-00
Chr04	irgsp1_rep	CDS	1011668	1012285	.	-	0	Parent=Os04t0117150-00
Chr04	irgsp1_rep	three_prime_UTR	1011419	1011667	.	-	.	Parent=Os04t0117150-00
Chr04	irgsp1_rep	mRNA	1015435	1019694	.	-	.	ID=Os04t0117200-01;Name=Os04t0117200-01;Locus_id=Os04g0117200;Note=Spectrin repeat containing protein.;Transcript_evidence=AK107523 (DDBJ%2C Best hit);ORF_evidence=Q01MV7 (UniProt);NIAS_FLcDNA=002-129-F11;Expression=AK107523;TENOR=Os04t0117200-01;KEGG=Os04t0117200-01
Chr04	irgsp1_rep	five_prime_UTR	1019630	1019694	.	-	.	Parent=Os04t0117200-01
Chr04	irgsp1_rep	CDS	1019387	1019629	.	-	0	Parent=Os04t0117200-01
Chr04	irgsp1_rep	CDS	1019192	1019294	.	-	0	Parent=Os04t0117200-01
Chr04	irgsp1_rep	CDS	1018385	1018458	.	-	2	Parent=Os04t0117200-01
Chr04	irgsp1_rep	CDS	1017547	1018251	.	-	0	Parent=Os04t0117200-01
Chr04	irgsp1_rep	CDS	1015910	1016029	.	-	0	Parent=Os04t0117200-01
Chr04	irgsp1_rep	three_prime_UTR	1015435	1015909	.	-	.	Parent=Os04t0117200-01
Chr04	irgsp1_rep	mRNA	1015451	1019297	.	+	.	ID=Os04t0117250-01;Name=Os04t0117250-01;Locus_id=Os04g0117250;Note=Hypothetical gene.;Transcript_evidence=AK288810 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090072B02;TENOR=Os04t0117250-01;KEGG=Os04t0117250-01
Chr04	irgsp1_rep	five_prime_UTR	1015451	1015736	.	+	.	Parent=Os04t0117250-01
Chr04	irgsp1_rep	CDS	1015737	1016105	.	+	0	Parent=Os04t0117250-01
Chr04	irgsp1_rep	three_prime_UTR	1016106	1019297	.	+	.	Parent=Os04t0117250-01
Chr04	irgsp1_rep	mRNA	1024132	1026339	.	-	.	ID=Os04t0117300-01;Name=Os04t0117300-01;Locus_id=Os04g0117300;Note=Similar to H0207B04.10 protein.;Transcript_evidence=AK109864 (DDBJ%2C Best hit);ORF_evidence=Q01MV6 (UniProt);GO=Biological Process: regulation of ARF protein signal transduction (GO:0032012),Cellular Component: intracellular (GO:0005622),Molecular Function: ARF guanyl-nucleotide exchange factor activity (GO:0005086);InterPro=SEC7-like (IPR000904),SEC7-like%2C alpha orthogonal bundle (IPR023394);NIAS_FLcDNA=002-148-H09;Expression=AK109864;TENOR=Os04t0117300-01;KEGG=Os04t0117300-01
Chr04	irgsp1_rep	five_prime_UTR	1026323	1026339	.	-	.	Parent=Os04t0117300-01
Chr04	irgsp1_rep	CDS	1025238	1026322	.	-	0	Parent=Os04t0117300-01
Chr04	irgsp1_rep	CDS	1024225	1025173	.	-	1	Parent=Os04t0117300-01
Chr04	irgsp1_rep	three_prime_UTR	1024132	1024224	.	-	.	Parent=Os04t0117300-01
Chr04	irgsp1_rep	mRNA	1021666	1024315	.	-	.	ID=Os04t0117300-02;Name=Os04t0117300-02;Locus_id=Os04g0117300;Note=SEC7-like domain containing protein.;Transcript_evidence=AK109764 (DDBJ%2C Best hit);ORF_evidence=Q01MV6 (UniProt);GO=Biological Process: regulation of ARF protein signal transduction (GO:0032012),Cellular Component: intracellular (GO:0005622),Molecular Function: ARF guanyl-nucleotide exchange factor activity (GO:0005086);InterPro=SEC7-like (IPR000904),SEC7-like%2C alpha orthogonal bundle (IPR023394);NIAS_FLcDNA=002-146-H08;Expression=AK109764;TENOR=Os04t0117300-02;KEGG=Os04t0117300-02
Chr04	irgsp1_rep	five_prime_UTR	1024124	1024315	.	-	.	Parent=Os04t0117300-02
Chr04	irgsp1_rep	CDS	1022104	1024123	.	-	0	Parent=Os04t0117300-02
Chr04	irgsp1_rep	CDS	1021996	1022000	.	-	2	Parent=Os04t0117300-02
Chr04	irgsp1_rep	three_prime_UTR	1021666	1021995	.	-	.	Parent=Os04t0117300-02
Chr04	irgsp1_rep	mRNA	1042772	1044783	.	+	.	ID=Os04t0117500-00;Name=Os04t0117500-00;Locus_id=Os04g0117500;Note=Potassium channel%2C voltage-dependent%2C EAG/ELK/ERG domain containing protein.;Transcript_evidence=BT069481 (DDBJ);ORF_evidence=Q652U9 (UniProt);GO=Biological Process: ion transport (GO:0006811),Biological Process: potassium ion transport (GO:0006813),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: ion channel activity (GO:0005216),Molecular Function: voltage-gated potassium channel activity (GO:0005249);InterPro=Potassium channel%2C voltage-dependent%2C EAG/ELK/ERG (IPR003938),Ion transport (IPR005821);TENOR=Os04t0117500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	1042772	1042801	.	+	.	Parent=Os04t0117500-00
Chr04	irgsp1_rep	CDS	1042802	1042998	.	+	0	Parent=Os04t0117500-00
Chr04	irgsp1_rep	CDS	1043104	1043259	.	+	1	Parent=Os04t0117500-00
Chr04	irgsp1_rep	CDS	1043386	1043443	.	+	1	Parent=Os04t0117500-00
Chr04	irgsp1_rep	CDS	1043545	1043862	.	+	0	Parent=Os04t0117500-00
Chr04	irgsp1_rep	CDS	1043945	1044076	.	+	0	Parent=Os04t0117500-00
Chr04	irgsp1_rep	three_prime_UTR	1044077	1044184	.	+	.	Parent=Os04t0117500-00
Chr04	irgsp1_rep	three_prime_UTR	1044275	1044369	.	+	.	Parent=Os04t0117500-00
Chr04	irgsp1_rep	three_prime_UTR	1044555	1044783	.	+	.	Parent=Os04t0117500-00
Chr04	irgsp1_rep	mRNA	1046902	1053870	.	+	.	ID=Os04t0117600-01;Name=Os04t0117600-01;Locus_id=Os04g0117600;CGSNL Gene Symbol=C3H26;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26;Oryzabase Gene Symbol Synonym(s)=OsC3H26;Oryzabase Gene Name Synonym(s)=tRNA-dihydrouridine synthase 3-like%2C Zinc finger CCCH domain-containing protein 26;Note=Similar to H0613H07.1 protein.;Transcript_evidence=AK111699 (DDBJ%2C Best hit);ORF_evidence=Q01ML2 (UniProt);GO=Biological Process: tRNA processing (GO:0008033),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: catalytic activity (GO:0003824),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: tRNA dihydrouridine synthase activity (GO:0017150),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Zinc finger%2C CCCH-type (IPR000571),tRNA-dihydrouridine synthase (IPR001269),Aldolase-type TIM barrel (IPR013785),tRNA-dihydrouridine synthase%2C conserved site (IPR018517);NIAS_FLcDNA=J023009K15;Oryzabase=8590;TENOR=Os04t0117600-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	1046902	1046926	.	+	.	Parent=Os04t0117600-01
Chr04	irgsp1_rep	CDS	1046927	1047211	.	+	0	Parent=Os04t0117600-01
Chr04	irgsp1_rep	CDS	1047865	1047981	.	+	0	Parent=Os04t0117600-01
Chr04	irgsp1_rep	CDS	1048055	1048285	.	+	0	Parent=Os04t0117600-01
Chr04	irgsp1_rep	CDS	1051103	1051358	.	+	0	Parent=Os04t0117600-01
Chr04	irgsp1_rep	CDS	1051454	1051710	.	+	2	Parent=Os04t0117600-01
Chr04	irgsp1_rep	CDS	1051881	1052153	.	+	0	Parent=Os04t0117600-01
Chr04	irgsp1_rep	CDS	1052520	1052801	.	+	0	Parent=Os04t0117600-01
Chr04	irgsp1_rep	CDS	1052948	1053068	.	+	0	Parent=Os04t0117600-01
Chr04	irgsp1_rep	CDS	1053254	1053423	.	+	2	Parent=Os04t0117600-01
Chr04	irgsp1_rep	CDS	1053516	1053614	.	+	0	Parent=Os04t0117600-01
Chr04	irgsp1_rep	three_prime_UTR	1053615	1053870	.	+	.	Parent=Os04t0117600-01
Chr04	irgsp1_rep	mRNA	1054609	1070887	.	+	.	ID=Os04t0117900-01;Name=Os04t0117900-01;Locus_id=Os04g0117900;Oryzabase Gene Symbol Synonym(s)=OsAMI2%2C AMI2%2C OsAMI1%2C AMI1;Oryzabase Gene Name Synonym(s)=amidase 2;Note=Amidase family protein.;Transcript_evidence=AK243470 (DDBJ%2C Best hit);ORF_evidence=Q01ML1 (UniProt);GO=Molecular Function: carbon-nitrogen ligase activity%2C with glutamine as amido-N-donor (GO:0016884);InterPro=Amidase (IPR000120),Amidase%2C conserved site (IPR020556),Amidase signature domain (IPR023631);NIAS_FLcDNA=J100072C12;Oryzabase=21872;TENOR=Os04t0117900-01;KEGG=Os04t0117900-01
Chr04	irgsp1_rep	five_prime_UTR	1054609	1054657	.	+	.	Parent=Os04t0117900-01
Chr04	irgsp1_rep	CDS	1054658	1054767	.	+	0	Parent=Os04t0117900-01
Chr04	irgsp1_rep	CDS	1054853	1055005	.	+	1	Parent=Os04t0117900-01
Chr04	irgsp1_rep	CDS	1055077	1055327	.	+	1	Parent=Os04t0117900-01
Chr04	irgsp1_rep	CDS	1055781	1055963	.	+	2	Parent=Os04t0117900-01
Chr04	irgsp1_rep	CDS	1056066	1056213	.	+	2	Parent=Os04t0117900-01
Chr04	irgsp1_rep	CDS	1056690	1056861	.	+	1	Parent=Os04t0117900-01
Chr04	irgsp1_rep	CDS	1070129	1070269	.	+	0	Parent=Os04t0117900-01
Chr04	irgsp1_rep	CDS	1070381	1070527	.	+	0	Parent=Os04t0117900-01
Chr04	irgsp1_rep	three_prime_UTR	1070528	1070887	.	+	.	Parent=Os04t0117900-01
Chr04	irgsp1_rep	mRNA	1073412	1076436	.	+	.	ID=Os04t0118100-01;Name=Os04t0118100-01;Locus_id=Os04g0118100;Oryzabase Gene Symbol Synonym(s)=OsAMI1%2C AMI1;Oryzabase Gene Name Synonym(s)=AMI1-like protein%2C Amidase 1;Note=Similar to H0613H07.3 protein.;Transcript_evidence=AK106028 (DDBJ%2C Best hit),AK058463 (DDBJ%2C Best hit);ORF_evidence=Q01ML0 (UniProt);GO=Molecular Function: carbon-nitrogen ligase activity%2C with glutamine as amido-N-donor (GO:0016884);InterPro=Amidase (IPR000120),Amidase%2C conserved site (IPR020556),Amidase signature domain (IPR023631);NIAS_FLcDNA=001-206-C12,001-016-A05;Oryzabase=21873;TENOR=Os04t0118100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	1073412	1073441	.	+	.	Parent=Os04t0118100-01
Chr04	irgsp1_rep	CDS	1073442	1073560	.	+	0	Parent=Os04t0118100-01
Chr04	irgsp1_rep	CDS	1073655	1073807	.	+	1	Parent=Os04t0118100-01
Chr04	irgsp1_rep	CDS	1074381	1074631	.	+	1	Parent=Os04t0118100-01
Chr04	irgsp1_rep	CDS	1074862	1075044	.	+	2	Parent=Os04t0118100-01
Chr04	irgsp1_rep	CDS	1075151	1075298	.	+	2	Parent=Os04t0118100-01
Chr04	irgsp1_rep	CDS	1075582	1075753	.	+	1	Parent=Os04t0118100-01
Chr04	irgsp1_rep	CDS	1075874	1076008	.	+	0	Parent=Os04t0118100-01
Chr04	irgsp1_rep	CDS	1076113	1076259	.	+	0	Parent=Os04t0118100-01
Chr04	irgsp1_rep	three_prime_UTR	1076260	1076436	.	+	.	Parent=Os04t0118100-01
Chr04	irgsp1_rep	mRNA	1093436	1098638	.	+	.	ID=Os04t0118400-01;Name=Os04t0118400-01;Locus_id=Os04g0118400;Note=Similar to Elongation factor EF-2 (Fragment).;Transcript_evidence=AK101405 (DDBJ%2C Best hit),AK101166 (DDBJ%2C Best hit);ORF_evidence=Q01MK8 (UniProt);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Translation elongation factor EFG/EF2%2C C-terminal (IPR000640),Protein synthesis factor%2C GTP-binding (IPR000795),Translation elongation factor EFTu/EF1A%2C domain 2 (IPR004161),Small GTP-binding protein domain (IPR005225),Translation elongation factor EFG/EF2%2C domain IV (IPR005517),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Elongation factor G/III/V (IPR009022),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=J033037G17,J033028E07;TENOR=Os04t0118400-01
Chr04	irgsp1_rep	five_prime_UTR	1093436	1093710	.	+	.	Parent=Os04t0118400-01
Chr04	irgsp1_rep	five_prime_UTR	1094942	1094980	.	+	.	Parent=Os04t0118400-01
Chr04	irgsp1_rep	CDS	1094981	1095071	.	+	0	Parent=Os04t0118400-01
Chr04	irgsp1_rep	CDS	1095941	1098381	.	+	2	Parent=Os04t0118400-01
Chr04	irgsp1_rep	three_prime_UTR	1098382	1098638	.	+	.	Parent=Os04t0118400-01
Chr04	irgsp1_rep	mRNA	1096578	1098615	.	+	.	ID=Os04t0118400-02;Name=Os04t0118400-02;Locus_id=Os04g0118400;Note=Similar to H0613H07.5 protein.;Transcript_evidence=AK103035 (DDBJ%2C Best hit);ORF_evidence=Q01MK8 (UniProt);GO=Molecular Function: GTP binding (GO:0005525);InterPro=Translation elongation factor EFG/EF2%2C C-terminal (IPR000640),Translation elongation factor EFTu/EF1A%2C domain 2 (IPR004161),Translation elongation factor EFG/EF2%2C domain IV (IPR005517),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Elongation factor G/III/V (IPR009022),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=J033117D12;Expression=AK103035;TENOR=Os04t0118400-02;KEGG=Os04t0118400-02 (EC:3.6.5.3)
Chr04	irgsp1_rep	five_prime_UTR	1096578	1096578	.	+	.	Parent=Os04t0118400-02
Chr04	irgsp1_rep	CDS	1096579	1098381	.	+	0	Parent=Os04t0118400-02
Chr04	irgsp1_rep	three_prime_UTR	1098382	1098615	.	+	.	Parent=Os04t0118400-02
Chr04	irgsp1_rep	mRNA	1097216	1098613	.	+	.	ID=Os04t0118400-03;Name=Os04t0118400-03;Locus_id=Os04g0118400;Note=Similar to H0613H07.5 protein.;Transcript_evidence=AK062196 (DDBJ%2C Best hit);ORF_evidence=Q01MK8 (UniProt);GO=Molecular Function: GTP binding (GO:0005525);InterPro=Translation elongation factor EFG/EF2%2C C-terminal (IPR000640),Translation elongation factor EFG/EF2%2C domain IV (IPR005517),Elongation factor G/III/V (IPR009022),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=001-046-F12;Expression=AK062196;TENOR=Os04t0118400-03;KEGG=Os04t0118400-03 (EC:3.6.5.3)
Chr04	irgsp1_rep	five_prime_UTR	1097216	1097217	.	+	.	Parent=Os04t0118400-03
Chr04	irgsp1_rep	CDS	1097218	1098381	.	+	0	Parent=Os04t0118400-03
Chr04	irgsp1_rep	three_prime_UTR	1098382	1098613	.	+	.	Parent=Os04t0118400-03
Chr04	irgsp1_rep	mRNA	1094956	1098381	.	-	.	ID=Os04t0118450-00;Name=Os04t0118450-00;Locus_id=Os04g0118450;Note=Hypothetical protein.;Transcript_evidence=tplb0056i14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0118450-00
Chr04	irgsp1_rep	five_prime_UTR	1096498	1098381	.	-	.	Parent=Os04t0118450-00
Chr04	irgsp1_rep	CDS	1096162	1096497	.	-	0	Parent=Os04t0118450-00
Chr04	irgsp1_rep	three_prime_UTR	1095951	1096161	.	-	.	Parent=Os04t0118450-00
Chr04	irgsp1_rep	three_prime_UTR	1094956	1095078	.	-	.	Parent=Os04t0118450-00
Chr04	irgsp1_rep	mRNA	1100312	1102268	.	-	.	ID=Os04t0118500-01;Name=Os04t0118500-01;Locus_id=Os04g0118500;Note=Peptidyl-prolyl cis-trans isomerase 1 (EC 5.2.1.8) (Rotamase Pin1) (PPIase Pin1) (DlPar13).;Transcript_evidence=AK243434 (DDBJ%2C Best hit);ORF_evidence=Q01MK7 (UniProt);GO=Molecular Function: isomerase activity (GO:0016853);InterPro=Peptidyl-prolyl cis-trans isomerase%2C PpiC-type (IPR000297),Peptidyl-prolyl cis-trans isomerase%2C PpiC-type%2C conserved site (IPR023058);NIAS_FLcDNA=J100068A03;TENOR=Os04t0118500-01;KEGG=Os04t0118500-01 (EC:5.2.1.8)
Chr04	irgsp1_rep	five_prime_UTR	1102210	1102268	.	-	.	Parent=Os04t0118500-01
Chr04	irgsp1_rep	CDS	1101963	1102209	.	-	0	Parent=Os04t0118500-01
Chr04	irgsp1_rep	CDS	1100482	1100606	.	-	2	Parent=Os04t0118500-01
Chr04	irgsp1_rep	three_prime_UTR	1100312	1100481	.	-	.	Parent=Os04t0118500-01
Chr04	irgsp1_rep	mRNA	1110678	1113347	.	+	.	ID=Os04t0118700-00;Name=Os04t0118700-00;Locus_id=Os04g0118700;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=tplb0008a11 (Wheat FLcDNA);ORF_evidence=NP_001052059.2 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os04t0118700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	1110678	1110725	.	+	.	Parent=Os04t0118700-00
Chr04	irgsp1_rep	CDS	1110726	1113296	.	+	0	Parent=Os04t0118700-00
Chr04	irgsp1_rep	three_prime_UTR	1113297	1113347	.	+	.	Parent=Os04t0118700-00
Chr04	irgsp1_rep	mRNA	1113415	1118775	.	+	.	ID=Os04t0118800-00;Name=Os04t0118800-00;Locus_id=Os04g0118800;Note=NB-ARC domain containing protein.;Transcript_evidence=AY336989 (DDBJ%2C Best hit);ORF_evidence=Q01MK5 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);Expression=AY336989;TENOR=Os04t0118800-00;KEGG=Os04t0118800-00
Chr04	irgsp1_rep	five_prime_UTR	1113415	1113474	.	+	.	Parent=Os04t0118800-00
Chr04	irgsp1_rep	CDS	1113475	1113511	.	+	0	Parent=Os04t0118800-00
Chr04	irgsp1_rep	CDS	1114298	1114375	.	+	2	Parent=Os04t0118800-00
Chr04	irgsp1_rep	CDS	1114631	1114688	.	+	2	Parent=Os04t0118800-00
Chr04	irgsp1_rep	CDS	1115771	1117550	.	+	1	Parent=Os04t0118800-00
Chr04	irgsp1_rep	CDS	1117645	1118619	.	+	0	Parent=Os04t0118800-00
Chr04	irgsp1_rep	three_prime_UTR	1118620	1118775	.	+	.	Parent=Os04t0118800-00
Chr04	irgsp1_rep	mRNA	1120673	1124998	.	-	.	ID=Os04t0118900-01;Name=Os04t0118900-01;Locus_id=Os04g0118900;CGSNL Gene Symbol=RSP29;CGSNL Gene Name=RS domain protein 29;Oryzabase Gene Symbol Synonym(s)=OsRS29%2C Os-RS29%2C OsRSp29%2C Os-RSp29;Oryzabase Gene Name Synonym(s)=RS domain protein 29%2C RS subfamily protein 29;Note=Similar to Arginine/serine-rich splicing factor 1 variant 2.;Transcript_evidence=AK102071 (DDBJ%2C Best hit);ORF_evidence=Q01MR9 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033082G11;Oryzabase=22750;Expression=AK102071;TENOR=Os04t0118900-01;KEGG=Os04t0118900-01
Chr04	irgsp1_rep	five_prime_UTR	1124945	1124998	.	-	.	Parent=Os04t0118900-01
Chr04	irgsp1_rep	five_prime_UTR	1124763	1124820	.	-	.	Parent=Os04t0118900-01
Chr04	irgsp1_rep	CDS	1124657	1124762	.	-	0	Parent=Os04t0118900-01
Chr04	irgsp1_rep	CDS	1123485	1123597	.	-	2	Parent=Os04t0118900-01
Chr04	irgsp1_rep	CDS	1123107	1123339	.	-	0	Parent=Os04t0118900-01
Chr04	irgsp1_rep	CDS	1121328	1121555	.	-	1	Parent=Os04t0118900-01
Chr04	irgsp1_rep	CDS	1120893	1120950	.	-	1	Parent=Os04t0118900-01
Chr04	irgsp1_rep	three_prime_UTR	1120673	1120892	.	-	.	Parent=Os04t0118900-01
Chr04	irgsp1_rep	mRNA	1125771	1126667	.	+	.	ID=Os04t0119000-01;Name=Os04t0119000-01;Locus_id=Os04g0119000;Note=Similar to H0716A07.5 protein.;Transcript_evidence=AK062143 (DDBJ%2C Best hit);ORF_evidence=Q01MR8 (UniProt);NIAS_FLcDNA=001-045-G06;Expression=AK062143;TENOR=Os04t0119000-01;KEGG=Os04t0119000-01
Chr04	irgsp1_rep	five_prime_UTR	1125771	1126073	.	+	.	Parent=Os04t0119000-01
Chr04	irgsp1_rep	CDS	1126074	1126136	.	+	0	Parent=Os04t0119000-01
Chr04	irgsp1_rep	CDS	1126286	1126471	.	+	0	Parent=Os04t0119000-01
Chr04	irgsp1_rep	three_prime_UTR	1126472	1126667	.	+	.	Parent=Os04t0119000-01
Chr04	irgsp1_rep	mRNA	1126011	1126711	.	+	.	ID=Os04t0119000-02;Name=Os04t0119000-02;Locus_id=Os04g0119000;Note=Similar to H0716A07.5 protein.;Transcript_evidence=AK120328 (DDBJ%2C Best hit);ORF_evidence=Q01MR8 (UniProt);NIAS_FLcDNA=J013058D11;Expression=AK120328;TENOR=Os04t0119000-02;KEGG=Os04t0119000-02
Chr04	irgsp1_rep	five_prime_UTR	1126011	1126073	.	+	.	Parent=Os04t0119000-02
Chr04	irgsp1_rep	CDS	1126074	1126136	.	+	0	Parent=Os04t0119000-02
Chr04	irgsp1_rep	CDS	1126286	1126471	.	+	0	Parent=Os04t0119000-02
Chr04	irgsp1_rep	three_prime_UTR	1126472	1126711	.	+	.	Parent=Os04t0119000-02
Chr04	irgsp1_rep	mRNA	1128723	1130033	.	+	.	ID=Os04t0119200-01;Name=Os04t0119200-01;Locus_id=Os04g0119200;Note=Similar to HAT family dimerisation domain containing protein%2C expressed.;Transcript_evidence=AK120591 (DDBJ%2C Best hit);ORF_evidence=Q337Y8 (UniProt);NIAS_FLcDNA=J013145N17;TENOR=Os04t0119200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	1128723	1129405	.	+	.	Parent=Os04t0119200-01
Chr04	irgsp1_rep	CDS	1129406	1129555	.	+	0	Parent=Os04t0119200-01
Chr04	irgsp1_rep	three_prime_UTR	1129556	1130033	.	+	.	Parent=Os04t0119200-01
Chr04	irgsp1_rep	mRNA	1133258	1135060	.	+	.	ID=Os04t0119300-00;Name=Os04t0119300-00;Locus_id=Os04g0119300;Note=Similar to H0716A07.6 protein.;Transcript_evidence=AK071651 (DDBJ%2C Secondary hit);ORF_evidence=Q01MR7 (UniProt);InterPro=Domain of unknown function DUF1990 (IPR018960);Expression=AK071651;TENOR=Os04t0119300-00;KEGG=Os04t0119300-00
Chr04	irgsp1_rep	five_prime_UTR	1133258	1133381	.	+	.	Parent=Os04t0119300-00
Chr04	irgsp1_rep	five_prime_UTR	1133888	1133897	.	+	.	Parent=Os04t0119300-00
Chr04	irgsp1_rep	CDS	1133898	1134166	.	+	0	Parent=Os04t0119300-00
Chr04	irgsp1_rep	CDS	1134243	1134453	.	+	1	Parent=Os04t0119300-00
Chr04	irgsp1_rep	CDS	1134600	1134797	.	+	0	Parent=Os04t0119300-00
Chr04	irgsp1_rep	three_prime_UTR	1134798	1135060	.	+	.	Parent=Os04t0119300-00
Chr04	irgsp1_rep	mRNA	1136017	1139638	.	+	.	ID=Os04t0119400-01;Name=Os04t0119400-01;Locus_id=Os04g0119400;Note=Similar to Pyruvate dehydrogenase E1 component%2C alpha subunit.;Transcript_evidence=AK069299 (DDBJ%2C Best hit);ORF_evidence=Q01MR6 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: intracellular membrane-bounded organelle (GO:0043231),Molecular Function: pyruvate dehydrogenase (acetyl-transferring) activity (GO:0004739),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C disulfide as acceptor (GO:0016624);InterPro=Dehydrogenase%2C E1 component (IPR001017),Pyruvate dehydrogenase (acetyl-transferring) E1 component%2C alpha subunit%2C subgroup y (IPR017597);NIAS_FLcDNA=J023012M21;Expression=AK069299;TENOR=Os04t0119400-01;KEGG=Os04t0119400-01 (EC:1.2.4.1)
Chr04	irgsp1_rep	five_prime_UTR	1136017	1136154	.	+	.	Parent=Os04t0119400-01
Chr04	irgsp1_rep	CDS	1136155	1136367	.	+	0	Parent=Os04t0119400-01
Chr04	irgsp1_rep	CDS	1137128	1137914	.	+	0	Parent=Os04t0119400-01
Chr04	irgsp1_rep	CDS	1139043	1139320	.	+	2	Parent=Os04t0119400-01
Chr04	irgsp1_rep	three_prime_UTR	1139321	1139638	.	+	.	Parent=Os04t0119400-01
Chr04	irgsp1_rep	mRNA	1151717	1152109	.	-	.	ID=Os04t0119500-01;Name=Os04t0119500-01;Locus_id=Os04g0119500;Note=Non-protein coding transcript.;Transcript_evidence=AK063189 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-112-B08;TENOR=Os04t0119500-01
Chr04	irgsp1_rep	exon	1151717	1152109	.	-	.	Parent=Os04t0119500-01
Chr04	irgsp1_rep	mRNA	1148894	1151980	.	-	.	ID=Os04t0119500-02;Name=Os04t0119500-02;Locus_id=Os04g0119500;Note=Similar to Membrane related protein-like.;Transcript_evidence=AK065035 (DDBJ%2C Best hit);ORF_evidence=Q01MR5 (UniProt);InterPro=Lipid-binding START (IPR002913),START-like domain (IPR023393);NIAS_FLcDNA=J013001H07;TENOR=Os04t0119500-02
Chr04	irgsp1_rep	five_prime_UTR	1151695	1151980	.	-	.	Parent=Os04t0119500-02
Chr04	irgsp1_rep	CDS	1151456	1151694	.	-	0	Parent=Os04t0119500-02
Chr04	irgsp1_rep	CDS	1151180	1151354	.	-	1	Parent=Os04t0119500-02
Chr04	irgsp1_rep	CDS	1150666	1150848	.	-	0	Parent=Os04t0119500-02
Chr04	irgsp1_rep	CDS	1150491	1150574	.	-	0	Parent=Os04t0119500-02
Chr04	irgsp1_rep	CDS	1149795	1149876	.	-	0	Parent=Os04t0119500-02
Chr04	irgsp1_rep	CDS	1149271	1149710	.	-	2	Parent=Os04t0119500-02
Chr04	irgsp1_rep	three_prime_UTR	1148894	1149270	.	-	.	Parent=Os04t0119500-02
Chr04	irgsp1_rep	mRNA	1148896	1151736	.	-	.	ID=Os04t0119500-03;Name=Os04t0119500-03;Locus_id=Os04g0119500;Note=Similar to Membrane related protein-like.;Transcript_evidence=AK061898 (DDBJ%2C Best hit);ORF_evidence=Q01MR5 (UniProt);InterPro=Lipid-binding START (IPR002913),START-like domain (IPR023393);NIAS_FLcDNA=001-041-H01;TENOR=Os04t0119500-03
Chr04	irgsp1_rep	five_prime_UTR	1151695	1151736	.	-	.	Parent=Os04t0119500-03
Chr04	irgsp1_rep	CDS	1151456	1151694	.	-	0	Parent=Os04t0119500-03
Chr04	irgsp1_rep	CDS	1151180	1151354	.	-	1	Parent=Os04t0119500-03
Chr04	irgsp1_rep	CDS	1150666	1150848	.	-	0	Parent=Os04t0119500-03
Chr04	irgsp1_rep	CDS	1150491	1150574	.	-	0	Parent=Os04t0119500-03
Chr04	irgsp1_rep	CDS	1149795	1149876	.	-	0	Parent=Os04t0119500-03
Chr04	irgsp1_rep	CDS	1149271	1149710	.	-	2	Parent=Os04t0119500-03
Chr04	irgsp1_rep	three_prime_UTR	1148896	1149270	.	-	.	Parent=Os04t0119500-03
Chr04	irgsp1_rep	mRNA	1160650	1166868	.	+	.	ID=Os04t0119800-01;Name=Os04t0119800-01;Locus_id=Os04g0119800;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=AK067558 (DDBJ%2C Best hit);ORF_evidence=B8AUK1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J013112K04;TENOR=Os04t0119800-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	1160650	1161034	.	+	0	Parent=Os04t0119800-01
Chr04	irgsp1_rep	CDS	1164639	1164845	.	+	2	Parent=Os04t0119800-01
Chr04	irgsp1_rep	CDS	1164913	1165664	.	+	2	Parent=Os04t0119800-01
Chr04	irgsp1_rep	three_prime_UTR	1165665	1166868	.	+	.	Parent=Os04t0119800-01
Chr04	irgsp1_rep	mRNA	1183301	1183696	.	+	.	ID=Os04t0120000-00;Name=Os04t0120000-00;Locus_id=Os04g0120000;Note=Hypothetical protein.;Transcript_evidence=AK372466 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0120000-00
Chr04	irgsp1_rep	CDS	1183301	1183696	.	+	0	Parent=Os04t0120000-00
Chr04	irgsp1_rep	mRNA	1201627	1202712	.	+	.	ID=Os04t0120100-00;Name=Os04t0120100-00;Locus_id=Os04g0120100;Oryzabase Gene Symbol Synonym(s)=OsSLPP1%2C SLPP1;Oryzabase Gene Name Synonym(s)=subtilisin-like protease precursor 1;Note=Similar to H0716A07.11 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01MA7 (UniProt);InterPro=Peptidase S8%2C subtilisin-related (IPR015500);Oryzabase=20393;TENOR=Os04t0120100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	1201627	1201732	.	+	0	Parent=Os04t0120100-00
Chr04	irgsp1_rep	CDS	1202162	1202712	.	+	2	Parent=Os04t0120100-00
Chr04	irgsp1_rep	mRNA	1211121	1219026	.	+	.	ID=Os04t0120300-00;Name=Os04t0120300-00;Locus_id=Os04g0120300;Oryzabase Gene Symbol Synonym(s)=OsSub33%2C SUB33;Oryzabase Gene Name Synonym(s)=Subtilisin 33%2C SUBTILISIN 33;Note=Similar to OSIGBa0115D20.4 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01MA4 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);Oryzabase=20119;TENOR=Os04t0120300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	1211121	1211274	.	+	0	Parent=Os04t0120300-00
Chr04	irgsp1_rep	CDS	1215733	1216346	.	+	2	Parent=Os04t0120300-00
Chr04	irgsp1_rep	CDS	1216458	1216528	.	+	0	Parent=Os04t0120300-00
Chr04	irgsp1_rep	CDS	1216624	1216869	.	+	1	Parent=Os04t0120300-00
Chr04	irgsp1_rep	CDS	1217276	1217402	.	+	1	Parent=Os04t0120300-00
Chr04	irgsp1_rep	CDS	1217910	1218102	.	+	0	Parent=Os04t0120300-00
Chr04	irgsp1_rep	CDS	1218473	1219026	.	+	2	Parent=Os04t0120300-00
Chr04	irgsp1_rep	mRNA	1220221	1221503	.	+	.	ID=Os04t0120350-00;Name=Os04t0120350-00;Locus_id=Os04g0120350;Note=Similar to H0716A07.11 protein.;Transcript_evidence=BT035192 (DDBJ);ORF_evidence=Q01MA7 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209);TENOR=Os04t0120350-00;KEGG=Os04t0120350-00
Chr04	irgsp1_rep	CDS	1220221	1220517	.	+	0	Parent=Os04t0120350-00
Chr04	irgsp1_rep	CDS	1220734	1220847	.	+	0	Parent=Os04t0120350-00
Chr04	irgsp1_rep	three_prime_UTR	1220848	1220925	.	+	.	Parent=Os04t0120350-00
Chr04	irgsp1_rep	three_prime_UTR	1221170	1221503	.	+	.	Parent=Os04t0120350-00
Chr04	irgsp1_rep	mRNA	1248450	1260282	.	+	.	ID=Os04t0121100-01;Name=Os04t0121100-01;Locus_id=Os04g0121100;Oryzabase Gene Symbol Synonym(s)=OsSub34%2C SUB34;Oryzabase Gene Name Synonym(s)=Subtilisin 34%2C SUBTILISIN 34;Note=Similar to OSIGBa0115D20.4 protein.;Transcript_evidence=AK287751 (DDBJ%2C Best hit);ORF_evidence=Q01MA4 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);NIAS_FLcDNA=J065156O05;Oryzabase=20120;TENOR=Os04t0121100-01;KEGG=Os04t0121100-01
Chr04	irgsp1_rep	five_prime_UTR	1248450	1248489	.	+	.	Parent=Os04t0121100-01
Chr04	irgsp1_rep	CDS	1248490	1248597	.	+	0	Parent=Os04t0121100-01
Chr04	irgsp1_rep	CDS	1249122	1249213	.	+	0	Parent=Os04t0121100-01
Chr04	irgsp1_rep	CDS	1250180	1250277	.	+	1	Parent=Os04t0121100-01
Chr04	irgsp1_rep	CDS	1250387	1250542	.	+	2	Parent=Os04t0121100-01
Chr04	irgsp1_rep	CDS	1255916	1256529	.	+	2	Parent=Os04t0121100-01
Chr04	irgsp1_rep	CDS	1256643	1256713	.	+	0	Parent=Os04t0121100-01
Chr04	irgsp1_rep	CDS	1257150	1257395	.	+	1	Parent=Os04t0121100-01
Chr04	irgsp1_rep	CDS	1258184	1258310	.	+	1	Parent=Os04t0121100-01
Chr04	irgsp1_rep	CDS	1258910	1259102	.	+	0	Parent=Os04t0121100-01
Chr04	irgsp1_rep	CDS	1259573	1260126	.	+	2	Parent=Os04t0121100-01
Chr04	irgsp1_rep	three_prime_UTR	1260127	1260282	.	+	.	Parent=Os04t0121100-01
Chr04	irgsp1_rep	mRNA	1265575	1266501	.	+	.	ID=Os04t0121200-00;Name=Os04t0121200-00;Locus_id=Os04g0121200;Note=Similar to OSIGBa0115D20.4 protein.;Transcript_evidence=BT035192 (DDBJ);ORF_evidence=Q01MA4 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Peptidase S8%2C subtilisin-related (IPR015500);TENOR=Os04t0121200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	1265575	1265610	.	+	.	Parent=Os04t0121200-00
Chr04	irgsp1_rep	CDS	1265611	1265771	.	+	0	Parent=Os04t0121200-00
Chr04	irgsp1_rep	CDS	1266012	1266501	.	+	1	Parent=Os04t0121200-00
Chr04	irgsp1_rep	mRNA	1280571	1284856	.	+	.	ID=Os04t0121300-00;Name=Os04t0121300-00;Locus_id=Os04g0121300;Oryzabase Gene Symbol Synonym(s)=OsSub35%2C SUB35;Oryzabase Gene Name Synonym(s)=Subtilisin 35%2C SUBTILISIN 35;Note=Similar to OSIGBa0115D20.4 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01MA4 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);Oryzabase=20121;TENOR=Os04t0121300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	1280571	1280591	.	+	0	Parent=Os04t0121300-00
Chr04	irgsp1_rep	CDS	1280681	1280772	.	+	0	Parent=Os04t0121300-00
Chr04	irgsp1_rep	CDS	1281054	1281151	.	+	1	Parent=Os04t0121300-00
Chr04	irgsp1_rep	CDS	1281250	1281405	.	+	2	Parent=Os04t0121300-00
Chr04	irgsp1_rep	CDS	1281653	1282272	.	+	2	Parent=Os04t0121300-00
Chr04	irgsp1_rep	CDS	1282397	1282464	.	+	0	Parent=Os04t0121300-00
Chr04	irgsp1_rep	CDS	1282765	1283016	.	+	1	Parent=Os04t0121300-00
Chr04	irgsp1_rep	CDS	1283307	1283442	.	+	1	Parent=Os04t0121300-00
Chr04	irgsp1_rep	CDS	1283971	1284163	.	+	0	Parent=Os04t0121300-00
Chr04	irgsp1_rep	CDS	1284303	1284856	.	+	2	Parent=Os04t0121300-00
Chr04	irgsp1_rep	mRNA	1320596	1321287	.	+	.	ID=Os04t0121800-01;Name=Os04t0121800-01;Locus_id=Os04g0121800;Note=Hypothetical conserved gene.;Transcript_evidence=AK058841 (DDBJ%2C Best hit),AK121553 (DDBJ%2C Best hit);ORF_evidence=B9FD46 (UniProt);NIAS_FLcDNA=001-004-D12,J033033F17;Expression=AK058841;TENOR=Os04t0121800-01;KEGG=Os04t0121800-01
Chr04	irgsp1_rep	five_prime_UTR	1320596	1320626	.	+	.	Parent=Os04t0121800-01
Chr04	irgsp1_rep	CDS	1320627	1320768	.	+	0	Parent=Os04t0121800-01
Chr04	irgsp1_rep	CDS	1321044	1321126	.	+	2	Parent=Os04t0121800-01
Chr04	irgsp1_rep	three_prime_UTR	1321127	1321287	.	+	.	Parent=Os04t0121800-01
Chr04	irgsp1_rep	mRNA	1325252	1327635	.	-	.	ID=Os04t0121900-01;Name=Os04t0121900-01;Locus_id=Os04g0121900;Note=Hypothetical conserved gene.;Transcript_evidence=AK121710 (DDBJ%2C Best hit);ORF_evidence=Q6K4F6 (UniProt);NIAS_FLcDNA=J033076M02;Expression=AK121710;TENOR=Os04t0121900-01;KEGG=Os04t0121900-01
Chr04	irgsp1_rep	five_prime_UTR	1327511	1327635	.	-	.	Parent=Os04t0121900-01
Chr04	irgsp1_rep	five_prime_UTR	1327404	1327423	.	-	.	Parent=Os04t0121900-01
Chr04	irgsp1_rep	CDS	1327206	1327403	.	-	0	Parent=Os04t0121900-01
Chr04	irgsp1_rep	three_prime_UTR	1325252	1327205	.	-	.	Parent=Os04t0121900-01
Chr04	irgsp1_rep	mRNA	1329948	1336530	.	-	.	ID=Os04t0122000-01;Name=Os04t0122000-01;Locus_id=Os04g0122000;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=AK065510 (DDBJ%2C Best hit);ORF_evidence=B8AUK1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J013030L03;Expression=AK065510;TENOR=Os04t0122000-01;KEGG=Os04t0122000-01
Chr04	irgsp1_rep	five_prime_UTR	1335589	1336530	.	-	.	Parent=Os04t0122000-01
Chr04	irgsp1_rep	CDS	1335159	1335588	.	-	0	Parent=Os04t0122000-01
Chr04	irgsp1_rep	CDS	1333911	1334060	.	-	2	Parent=Os04t0122000-01
Chr04	irgsp1_rep	CDS	1330928	1332081	.	-	2	Parent=Os04t0122000-01
Chr04	irgsp1_rep	three_prime_UTR	1329948	1330927	.	-	.	Parent=Os04t0122000-01
Chr04	irgsp1_rep	mRNA	1330063	1336461	.	-	.	ID=Os04t0122000-02;Name=Os04t0122000-02;Locus_id=Os04g0122000;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=AK099773 (DDBJ%2C Best hit);ORF_evidence=B8AUK1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J013095E04;TENOR=Os04t0122000-02
Chr04	irgsp1_rep	five_prime_UTR	1335589	1336461	.	-	.	Parent=Os04t0122000-02
Chr04	irgsp1_rep	CDS	1335159	1335588	.	-	0	Parent=Os04t0122000-02
Chr04	irgsp1_rep	CDS	1333911	1334060	.	-	2	Parent=Os04t0122000-02
Chr04	irgsp1_rep	CDS	1330928	1332081	.	-	2	Parent=Os04t0122000-02
Chr04	irgsp1_rep	three_prime_UTR	1330063	1330927	.	-	.	Parent=Os04t0122000-02
Chr04	irgsp1_rep	mRNA	1330063	1335560	.	-	.	ID=Os04t0122000-03;Name=Os04t0122000-03;Locus_id=Os04g0122000;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=AK072577 (DDBJ%2C Best hit);ORF_evidence=B8AUK1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J023126C06;TENOR=Os04t0122000-03
Chr04	irgsp1_rep	five_prime_UTR	1335559	1335560	.	-	.	Parent=Os04t0122000-03
Chr04	irgsp1_rep	CDS	1335159	1335558	.	-	0	Parent=Os04t0122000-03
Chr04	irgsp1_rep	CDS	1333911	1334060	.	-	2	Parent=Os04t0122000-03
Chr04	irgsp1_rep	CDS	1330928	1332081	.	-	2	Parent=Os04t0122000-03
Chr04	irgsp1_rep	three_prime_UTR	1330063	1330927	.	-	.	Parent=Os04t0122000-03
Chr04	irgsp1_rep	mRNA	1359584	1362382	.	-	.	ID=Os04t0122200-00;Name=Os04t0122200-00;Locus_id=Os04g0122200;Note=Similar to OSIGBa0137A06.2 protein.;Transcript_evidence=DQ119305 (DDBJ);ORF_evidence=Q01N23 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os04t0122200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	1359584	1362382	.	-	0	Parent=Os04t0122200-00
Chr04	irgsp1_rep	mRNA	1369057	1370924	.	-	.	ID=Os04t0122750-01;Name=Os04t0122750-01;Locus_id=Os04g0122750;Note=Non-protein coding transcript.;Transcript_evidence=AK288326 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090022H05;TENOR=Os04t0122750-01
Chr04	irgsp1_rep	exon	1369057	1370924	.	-	.	Parent=Os04t0122750-01
Chr04	irgsp1_rep	mRNA	1451781	1452496	.	-	.	ID=Os04t0123800-00;Name=Os04t0123800-00;Locus_id=Os04g0123800;Note=Legume lectin%2C beta chain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3AQI9 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Legume lectin%2C beta chain (IPR001220),Concanavalin A-like lectin/glucanase (IPR008985),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Legume lectin%2C beta chain%2C Mn/Ca-binding site (IPR019825);TENOR=Os04t0123800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	1452177	1452496	.	-	0	Parent=Os04t0123800-00
Chr04	irgsp1_rep	CDS	1451781	1452117	.	-	1	Parent=Os04t0123800-00
Chr04	irgsp1_rep	mRNA	1524504	1525180	.	-	.	ID=Os04t0124233-00;Name=Os04t0124233-00;Locus_id=Os04g0124233;Note=Similar to 3-N-debenzoyl-2-deoxytaxol N-benzoyltransferase.;Transcript_evidence=AY056040 (DDBJ);ORF_evidence=NP_001149738.1 (RefSeq);TENOR=Os04t0124233-00
Chr04	irgsp1_rep	CDS	1524689	1525180	.	-	0	Parent=Os04t0124233-00
Chr04	irgsp1_rep	three_prime_UTR	1524504	1524688	.	-	.	Parent=Os04t0124233-00
Chr04	irgsp1_rep	mRNA	1531391	1532372	.	+	.	ID=Os04t0125100-01;Name=Os04t0125100-01;Locus_id=Os04g0125100;Note=Hypothetical protein.;Transcript_evidence=AK108386 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-142-E12;Expression=AK108386;TENOR=Os04t0125100-01;KEGG=Os04t0125100-01
Chr04	irgsp1_rep	five_prime_UTR	1531391	1531477	.	+	.	Parent=Os04t0125100-01
Chr04	irgsp1_rep	CDS	1531478	1531855	.	+	0	Parent=Os04t0125100-01
Chr04	irgsp1_rep	three_prime_UTR	1531856	1532372	.	+	.	Parent=Os04t0125100-01
Chr04	irgsp1_rep	mRNA	1562252	1572696	.	-	.	ID=Os04t0125700-01;Name=Os04t0125700-01;Locus_id=Os04g0125700;Note=Concanavalin A-like lectin/glucanase domain containing protein.;Transcript_evidence=AK243157 (DDBJ%2C Best hit),AK073177 (DDBJ%2C Best hit);ORF_evidence=Q01MT2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Legume lectin%2C beta chain%2C Mn/Ca-binding site (IPR019825);NIAS_FLcDNA=J100033K03,J033004M16;TENOR=Os04t0125700-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	1572671	1572696	.	-	.	Parent=Os04t0125700-01
Chr04	irgsp1_rep	CDS	1571803	1572670	.	-	0	Parent=Os04t0125700-01
Chr04	irgsp1_rep	CDS	1566281	1566818	.	-	2	Parent=Os04t0125700-01
Chr04	irgsp1_rep	CDS	1562479	1563130	.	-	1	Parent=Os04t0125700-01
Chr04	irgsp1_rep	three_prime_UTR	1562252	1562478	.	-	.	Parent=Os04t0125700-01
Chr04	irgsp1_rep	mRNA	1569335	1570044	.	+	.	ID=Os04t0125800-00;Name=Os04t0125800-00;Locus_id=Os04g0125800;Note=Similar to Growth-regulating factor 1.;Transcript_evidence=EF515848 (DDBJ);ORF_evidence=Q9SDZ5 (UniProt);TENOR=Os04t0125800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	1569335	1569468	.	+	.	Parent=Os04t0125800-00
Chr04	irgsp1_rep	CDS	1569469	1569783	.	+	0	Parent=Os04t0125800-00
Chr04	irgsp1_rep	three_prime_UTR	1569784	1570044	.	+	.	Parent=Os04t0125800-00
Chr04	irgsp1_rep	mRNA	1652404	1653676	.	-	.	ID=Os04t0126500-01;Name=Os04t0126500-01;Locus_id=Os04g0126500;Note=Hypothetical protein.;Transcript_evidence=AK067465 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013102F06;Expression=AK067465;TENOR=Os04t0126500-01;KEGG=Os04t0126500-01
Chr04	irgsp1_rep	five_prime_UTR	1653403	1653676	.	-	.	Parent=Os04t0126500-01
Chr04	irgsp1_rep	five_prime_UTR	1653226	1653328	.	-	.	Parent=Os04t0126500-01
Chr04	irgsp1_rep	CDS	1652923	1653225	.	-	0	Parent=Os04t0126500-01
Chr04	irgsp1_rep	three_prime_UTR	1652404	1652922	.	-	.	Parent=Os04t0126500-01
Chr04	irgsp1_rep	mRNA	1652410	1653620	.	-	.	ID=Os04t0126500-02;Name=Os04t0126500-02;Locus_id=Os04g0126500;Note=Hypothetical protein.;Transcript_evidence=AK106103 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-207-C08;Expression=AK106103;TENOR=Os04t0126500-02;KEGG=Os04t0126500-02
Chr04	irgsp1_rep	five_prime_UTR	1653226	1653620	.	-	.	Parent=Os04t0126500-02
Chr04	irgsp1_rep	CDS	1652923	1653225	.	-	0	Parent=Os04t0126500-02
Chr04	irgsp1_rep	three_prime_UTR	1652839	1652922	.	-	.	Parent=Os04t0126500-02
Chr04	irgsp1_rep	three_prime_UTR	1652410	1652670	.	-	.	Parent=Os04t0126500-02
Chr04	irgsp1_rep	mRNA	1654498	1656302	.	+	.	ID=Os04t0126600-00;Name=Os04t0126600-00;Locus_id=Os04g0126600;Note=Similar to OSIGBa0115D20.4 protein.;Transcript_evidence=BT035192 (DDBJ);ORF_evidence=Q01MA4 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Peptidase S8%2C subtilisin-related (IPR015500);TENOR=Os04t0126600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	1654498	1654662	.	+	0	Parent=Os04t0126600-00
Chr04	irgsp1_rep	CDS	1655151	1655343	.	+	0	Parent=Os04t0126600-00
Chr04	irgsp1_rep	CDS	1655714	1656267	.	+	2	Parent=Os04t0126600-00
Chr04	irgsp1_rep	three_prime_UTR	1656268	1656302	.	+	.	Parent=Os04t0126600-00
Chr04	irgsp1_rep	mRNA	1659469	1659899	.	+	.	ID=Os04t0126800-01;Name=Os04t0126800-01;Locus_id=Os04g0126800;Note=Conserved hypothetical protein.;Transcript_evidence=AK107895 (DDBJ%2C Best hit);ORF_evidence=Q6MW89 (UniProt);NIAS_FLcDNA=002-134-F02;Expression=AK107895;TENOR=Os04t0126800-01;KEGG=Os04t0126800-01
Chr04	irgsp1_rep	five_prime_UTR	1659469	1659653	.	+	.	Parent=Os04t0126800-01
Chr04	irgsp1_rep	CDS	1659654	1659875	.	+	0	Parent=Os04t0126800-01
Chr04	irgsp1_rep	three_prime_UTR	1659876	1659899	.	+	.	Parent=Os04t0126800-01
Chr04	irgsp1_rep	mRNA	1677297	1680389	.	-	.	ID=Os04t0126900-01;Name=Os04t0126900-01;Locus_id=Os04g0126900;Note=Similar to H0124E07.4 protein.;Transcript_evidence=AK121671 (DDBJ%2C Best hit);ORF_evidence=Q25AH9 (UniProt);NIAS_FLcDNA=J033067O03;TENOR=Os04t0126900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	1680304	1680389	.	-	.	Parent=Os04t0126900-01
Chr04	irgsp1_rep	CDS	1680282	1680303	.	-	0	Parent=Os04t0126900-01
Chr04	irgsp1_rep	CDS	1679966	1680195	.	-	2	Parent=Os04t0126900-01
Chr04	irgsp1_rep	three_prime_UTR	1679937	1679965	.	-	.	Parent=Os04t0126900-01
Chr04	irgsp1_rep	three_prime_UTR	1678751	1678817	.	-	.	Parent=Os04t0126900-01
Chr04	irgsp1_rep	three_prime_UTR	1677297	1677517	.	-	.	Parent=Os04t0126900-01
Chr04	irgsp1_rep	mRNA	1682213	1684075	.	+	.	ID=Os04t0127001-01;Name=Os04t0127001-01;Locus_id=Os04g0127001;Note=Conserved hypothetical protein.;Transcript_evidence=AK241030 (DDBJ%2C Best hit);ORF_evidence=NP_001173743.1 (RefSeq);NIAS_FLcDNA=J065058G01;TENOR=Os04t0127001-01;KEGG=Os04t0127001-01
Chr04	irgsp1_rep	five_prime_UTR	1682213	1683789	.	+	.	Parent=Os04t0127001-01
Chr04	irgsp1_rep	CDS	1683790	1684014	.	+	0	Parent=Os04t0127001-01
Chr04	irgsp1_rep	three_prime_UTR	1684015	1684075	.	+	.	Parent=Os04t0127001-01
Chr04	irgsp1_rep	mRNA	1702012	1702952	.	+	.	ID=Os04t0127100-01;Name=Os04t0127100-01;Locus_id=Os04g0127100;Oryzabase Gene Symbol Synonym(s)=OsSub37%2C SUB37;Oryzabase Gene Name Synonym(s)=Subtilisin 37%2C SUBTILISIN 37;Note=Peptidase S8%2C subtilisin-related domain containing protein.;Transcript_evidence=AK108388 (DDBJ%2C Best hit);ORF_evidence=NP_567362.1 (RefSeq);GO=Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259);NIAS_FLcDNA=002-142-F02;Oryzabase=20123;Expression=AK108388;TENOR=Os04t0127100-01;KEGG=Os04t0127100-01
Chr04	irgsp1_rep	five_prime_UTR	1702012	1702065	.	+	.	Parent=Os04t0127100-01
Chr04	irgsp1_rep	CDS	1702066	1702179	.	+	0	Parent=Os04t0127100-01
Chr04	irgsp1_rep	CDS	1702349	1702438	.	+	0	Parent=Os04t0127100-01
Chr04	irgsp1_rep	CDS	1702615	1702800	.	+	0	Parent=Os04t0127100-01
Chr04	irgsp1_rep	three_prime_UTR	1702801	1702952	.	+	.	Parent=Os04t0127100-01
Chr04	irgsp1_rep	mRNA	1705451	1710216	.	+	.	ID=Os04t0127200-01;Name=Os04t0127200-01;Locus_id=Os04g0127200;Oryzabase Gene Symbol Synonym(s)=OsSub37%2C SUB37;Oryzabase Gene Name Synonym(s)=Subtilisin 37%2C SUBTILISIN 37;Note=Hypothetical conserved gene.;Transcript_evidence=AK066903 (DDBJ%2C Best hit);ORF_evidence=Q6MW77 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C His-active site (IPR022398);NIAS_FLcDNA=J013091P08;Oryzabase=20123;Expression=AK066903;TENOR=Os04t0127200-01;KEGG=Os04t0127200-01
Chr04	irgsp1_rep	five_prime_UTR	1705451	1705858	.	+	.	Parent=Os04t0127200-01
Chr04	irgsp1_rep	CDS	1705859	1705865	.	+	0	Parent=Os04t0127200-01
Chr04	irgsp1_rep	CDS	1706206	1706361	.	+	2	Parent=Os04t0127200-01
Chr04	irgsp1_rep	CDS	1707374	1707993	.	+	2	Parent=Os04t0127200-01
Chr04	irgsp1_rep	CDS	1708122	1708186	.	+	0	Parent=Os04t0127200-01
Chr04	irgsp1_rep	CDS	1708279	1708696	.	+	1	Parent=Os04t0127200-01
Chr04	irgsp1_rep	three_prime_UTR	1708697	1709384	.	+	.	Parent=Os04t0127200-01
Chr04	irgsp1_rep	three_prime_UTR	1709468	1710216	.	+	.	Parent=Os04t0127200-01
Chr04	irgsp1_rep	mRNA	1705560	1710275	.	+	.	ID=Os04t0127200-02;Name=Os04t0127200-02;Locus_id=Os04g0127200;Oryzabase Gene Symbol Synonym(s)=OsSub37%2C SUB37;Oryzabase Gene Name Synonym(s)=Subtilisin 37%2C SUBTILISIN 37;Note=Similar to Subtilase.;Transcript_evidence=AK100128 (DDBJ%2C Best hit);ORF_evidence=Q9FVC7 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C His-active site (IPR022398),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);NIAS_FLcDNA=J023009E20;Oryzabase=20123;Expression=AK100128;TENOR=Os04t0127200-02;KEGG=Os04t0127200-02
Chr04	irgsp1_rep	five_prime_UTR	1705560	1705858	.	+	.	Parent=Os04t0127200-02
Chr04	irgsp1_rep	CDS	1705859	1705865	.	+	0	Parent=Os04t0127200-02
Chr04	irgsp1_rep	CDS	1706206	1706361	.	+	2	Parent=Os04t0127200-02
Chr04	irgsp1_rep	CDS	1707374	1707993	.	+	2	Parent=Os04t0127200-02
Chr04	irgsp1_rep	CDS	1708122	1708186	.	+	0	Parent=Os04t0127200-02
Chr04	irgsp1_rep	CDS	1708279	1708681	.	+	1	Parent=Os04t0127200-02
Chr04	irgsp1_rep	CDS	1709213	1709384	.	+	0	Parent=Os04t0127200-02
Chr04	irgsp1_rep	CDS	1709468	1709997	.	+	2	Parent=Os04t0127200-02
Chr04	irgsp1_rep	three_prime_UTR	1709998	1710275	.	+	.	Parent=Os04t0127200-02
Chr04	irgsp1_rep	mRNA	1717097	1720332	.	+	.	ID=Os04t0127300-01;Name=Os04t0127300-01;Locus_id=Os04g0127300;Oryzabase Gene Symbol Synonym(s)=OsSub38%2C SUB38;Oryzabase Gene Name Synonym(s)=Subtilisin 38%2C SUBTILISIN 38;Note=Peptidase S8 and S53%2C subtilisin%2C kexin%2C sedolisin domain containing protein.;Transcript_evidence=AK062269 (DDBJ%2C Best hit);ORF_evidence=Q9FVC7 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C His-active site (IPR022398),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);NIAS_FLcDNA=001-100-A05;Oryzabase=20124;Expression=AK062269;TENOR=Os04t0127300-01;KEGG=Os04t0127300-01
Chr04	irgsp1_rep	five_prime_UTR	1717097	1717097	.	+	.	Parent=Os04t0127300-01
Chr04	irgsp1_rep	CDS	1717098	1717146	.	+	0	Parent=Os04t0127300-01
Chr04	irgsp1_rep	CDS	1717589	1718208	.	+	2	Parent=Os04t0127300-01
Chr04	irgsp1_rep	CDS	1718315	1718376	.	+	0	Parent=Os04t0127300-01
Chr04	irgsp1_rep	CDS	1718469	1718859	.	+	1	Parent=Os04t0127300-01
Chr04	irgsp1_rep	CDS	1719322	1719493	.	+	0	Parent=Os04t0127300-01
Chr04	irgsp1_rep	CDS	1719604	1720130	.	+	2	Parent=Os04t0127300-01
Chr04	irgsp1_rep	three_prime_UTR	1720131	1720332	.	+	.	Parent=Os04t0127300-01
Chr04	irgsp1_rep	mRNA	1723217	1727297	.	+	.	ID=Os04t0127500-01;Name=Os04t0127500-01;Locus_id=Os04g0127500;CGSNL Gene Symbol=WAK29;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 29;Oryzabase Gene Symbol Synonym(s)=OsWAK29;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK102639 (DDBJ%2C Best hit);ORF_evidence=B8AUL3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),EGF-like calcium-binding (IPR001881),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EGF-like calcium-binding%2C conserved site (IPR018097);NIAS_FLcDNA=J033099P12;Oryzabase=6929;Expression=AK102639;TENOR=Os04t0127500-01;KEGG=Os04t0127500-01
Chr04	irgsp1_rep	five_prime_UTR	1723217	1723286	.	+	.	Parent=Os04t0127500-01
Chr04	irgsp1_rep	CDS	1723287	1723449	.	+	0	Parent=Os04t0127500-01
Chr04	irgsp1_rep	CDS	1724739	1725197	.	+	2	Parent=Os04t0127500-01
Chr04	irgsp1_rep	CDS	1725687	1725833	.	+	2	Parent=Os04t0127500-01
Chr04	irgsp1_rep	CDS	1725922	1727174	.	+	2	Parent=Os04t0127500-01
Chr04	irgsp1_rep	three_prime_UTR	1727175	1727297	.	+	.	Parent=Os04t0127500-01
Chr04	irgsp1_rep	mRNA	1725123	1727021	.	-	.	ID=Os04t0127550-00;Name=Os04t0127550-00;Locus_id=Os04g0127550;Note=Non-protein coding transcript.;Transcript_evidence=FP093119 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0127550-00
Chr04	irgsp1_rep	exon	1726488	1727021	.	-	.	Parent=Os04t0127550-00
Chr04	irgsp1_rep	exon	1725123	1725244	.	-	.	Parent=Os04t0127550-00
Chr04	irgsp1_rep	mRNA	1740179	1740998	.	+	.	ID=Os04t0127600-00;Name=Os04t0127600-00;Locus_id=Os04g0127600;Oryzabase Gene Symbol Synonym(s)=OsSub39%2C SUB39;Oryzabase Gene Name Synonym(s)=Subtilisin 39%2C SUBTILISIN 39;Note=Similar to Subtilase.;Transcript_evidence=FP094622 (DDBJ);ORF_evidence=Q9FVC7 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);Oryzabase=20125;TENOR=Os04t0127600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	1740179	1740198	.	+	.	Parent=Os04t0127600-00
Chr04	irgsp1_rep	CDS	1740199	1740370	.	+	0	Parent=Os04t0127600-00
Chr04	irgsp1_rep	CDS	1740466	1740998	.	+	2	Parent=Os04t0127600-00
Chr04	irgsp1_rep	mRNA	1750295	1756153	.	-	.	ID=Os04t0127750-01;Name=Os04t0127750-01;Locus_id=Os04g0127750;Note=Similar to OSIGBa0097I11.2 protein.;Transcript_evidence=AK288344 (DDBJ%2C Best hit);ORF_evidence=Q01M65 (UniProt);NIAS_FLcDNA=J090023K17;TENOR=Os04t0127750-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	1750579	1756153	.	-	.	Parent=Os04t0127750-01
Chr04	irgsp1_rep	CDS	1750465	1750578	.	-	0	Parent=Os04t0127750-01
Chr04	irgsp1_rep	three_prime_UTR	1750295	1750464	.	-	.	Parent=Os04t0127750-01
Chr04	irgsp1_rep	mRNA	1754439	1759735	.	+	.	ID=Os04t0127800-01;Name=Os04t0127800-01;Locus_id=Os04g0127800;Oryzabase Gene Symbol Synonym(s)=OsMED15_1%2C MED15_1%2C OsKIX_3%2C KIX_3;Oryzabase Gene Name Synonym(s)=KIX domain protein 3%2C Mediator 15_1;Note=Coactivator CBP%2C KIX domain containing protein.;Transcript_evidence=AK105313 (DDBJ%2C Best hit);ORF_evidence=Q6MW71 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: transcription cofactor activity (GO:0003712);InterPro=Coactivator CBP%2C KIX (IPR003101);NIAS_FLcDNA=001-117-D07;Oryzabase=13458;Expression=AK105313;TENOR=Os04t0127800-01;KEGG=Os04t0127800-01
Chr04	irgsp1_rep	five_prime_UTR	1754439	1754506	.	+	.	Parent=Os04t0127800-01
Chr04	irgsp1_rep	CDS	1754507	1754610	.	+	0	Parent=Os04t0127800-01
Chr04	irgsp1_rep	CDS	1755300	1755411	.	+	1	Parent=Os04t0127800-01
Chr04	irgsp1_rep	CDS	1755724	1756462	.	+	0	Parent=Os04t0127800-01
Chr04	irgsp1_rep	CDS	1756592	1756644	.	+	2	Parent=Os04t0127800-01
Chr04	irgsp1_rep	CDS	1756782	1756859	.	+	0	Parent=Os04t0127800-01
Chr04	irgsp1_rep	CDS	1756975	1757273	.	+	0	Parent=Os04t0127800-01
Chr04	irgsp1_rep	CDS	1757531	1758344	.	+	1	Parent=Os04t0127800-01
Chr04	irgsp1_rep	CDS	1758444	1758710	.	+	0	Parent=Os04t0127800-01
Chr04	irgsp1_rep	CDS	1758855	1759049	.	+	0	Parent=Os04t0127800-01
Chr04	irgsp1_rep	CDS	1759155	1759240	.	+	0	Parent=Os04t0127800-01
Chr04	irgsp1_rep	CDS	1759337	1759556	.	+	1	Parent=Os04t0127800-01
Chr04	irgsp1_rep	three_prime_UTR	1759557	1759735	.	+	.	Parent=Os04t0127800-01
Chr04	irgsp1_rep	mRNA	1760660	1762304	.	+	.	ID=Os04t0127900-00;Name=Os04t0127900-00;Locus_id=Os04g0127900;Note=Conserved hypothetical protein.;Transcript_evidence=BT062235 (DDBJ);ORF_evidence=Q6MW71 (UniProt);TENOR=Os04t0127900-00
Chr04	irgsp1_rep	five_prime_UTR	1760660	1761062	.	+	.	Parent=Os04t0127900-00
Chr04	irgsp1_rep	CDS	1761063	1761410	.	+	0	Parent=Os04t0127900-00
Chr04	irgsp1_rep	three_prime_UTR	1761411	1762304	.	+	.	Parent=Os04t0127900-00
Chr04	irgsp1_rep	mRNA	1766911	1768449	.	-	.	ID=Os04t0128001-00;Name=Os04t0128001-00;Locus_id=Os04g0128001;Note=Similar to OSIGBa0126J24.7 protein.;Transcript_evidence=AK360529 (DDBJ);ORF_evidence=Q01N03 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os04t0128001-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	1767007	1768449	.	-	0	Parent=Os04t0128001-00
Chr04	irgsp1_rep	three_prime_UTR	1766911	1767006	.	-	.	Parent=Os04t0128001-00
Chr04	irgsp1_rep	mRNA	1774866	1778296	.	+	.	ID=Os04t0128300-01;Name=Os04t0128300-01;Locus_id=Os04g0128300;Note=Conserved hypothetical protein.;Transcript_evidence=AK072006 (DDBJ%2C Best hit);ORF_evidence=NP_001059784.1 (RefSeq);NIAS_FLcDNA=J013095J19;Expression=AK072006;TENOR=Os04t0128300-01;KEGG=Os04t0128300-01
Chr04	irgsp1_rep	five_prime_UTR	1774866	1776478	.	+	.	Parent=Os04t0128300-01
Chr04	irgsp1_rep	CDS	1776479	1776844	.	+	0	Parent=Os04t0128300-01
Chr04	irgsp1_rep	three_prime_UTR	1776845	1777410	.	+	.	Parent=Os04t0128300-01
Chr04	irgsp1_rep	three_prime_UTR	1777903	1778296	.	+	.	Parent=Os04t0128300-01
Chr04	irgsp1_rep	mRNA	1779894	1781348	.	-	.	ID=Os04t0128400-00;Name=Os04t0128400-00;Locus_id=Os04g0128400;Note=Similar to OSIGBa0126J24.7 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01N03 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os04t0128400-00
Chr04	irgsp1_rep	CDS	1779894	1781348	.	-	0	Parent=Os04t0128400-00
Chr04	irgsp1_rep	mRNA	1779927	1781357	.	+	.	ID=Os04t0128550-00;Name=Os04t0128550-00;Locus_id=Os04g0128550;Note=Hypothetical protein.;Transcript_evidence=AK357549 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0128550-00
Chr04	irgsp1_rep	CDS	1779927	1780277	.	+	0	Parent=Os04t0128550-00
Chr04	irgsp1_rep	three_prime_UTR	1780278	1781357	.	+	.	Parent=Os04t0128550-00
Chr04	irgsp1_rep	mRNA	1791428	1792971	.	-	.	ID=Os04t0128700-01;Name=Os04t0128700-01;Locus_id=Os04g0128700;Note=Thioredoxin-like fold domain containing protein.;Transcript_evidence=AK107172 (DDBJ%2C Best hit);ORF_evidence=Q01N02 (UniProt);NIAS_FLcDNA=002-124-G04;Expression=AK107172;TENOR=Os04t0128700-01;KEGG=Os04t0128700-01
Chr04	irgsp1_rep	five_prime_UTR	1792931	1792971	.	-	.	Parent=Os04t0128700-01
Chr04	irgsp1_rep	CDS	1791515	1792930	.	-	0	Parent=Os04t0128700-01
Chr04	irgsp1_rep	three_prime_UTR	1791428	1791514	.	-	.	Parent=Os04t0128700-01
Chr04	irgsp1_rep	mRNA	1813960	1816070	.	-	.	ID=Os04t0128900-01;Name=Os04t0128900-01;Locus_id=Os04g0128900;RAP-DB Gene Symbol Synonym(s)=YUCCA7%2C OsYUCCA7%2C OsYUC7;RAP-DB Gene Name Synonym(s)=YUCCA-LIKE GENE 7%2C (YUCCA-like gene);CGSNL Gene Symbol=YUCCA7;CGSNL Gene Name=YUCCA-LIKE GENE 7;Oryzabase Gene Symbol Synonym(s)=OsYUCCA7%2C OsYUC7%2C OsYUC5%2C YUC5%2C YUC7;Oryzabase Gene Name Synonym(s)=(YUCCA-like gene);Note=Flavin monooxygenase-like enzyme%2C Auxin biosynthesis;Transcript_evidence=AK068976 (Genbank);ORF_evidence=Q7XP26 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: flavin-containing monooxygenase activity (GO:0004499),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=Pyridine nucleotide-disulphide oxidoreductase%2C class-II (IPR000103),FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR013027),Flavin monooxygenase-like (IPR020946);NIAS_FLcDNA=J023002N07;Manual Curation=July 1%2C 2010;Literature_PMID=17220367;Oryzabase=7444;TENOR=Os04t0128900-01;KEGG=Os04t0128900-01 (EC:1.14.13.-)
Chr04	irgsp1_rep	five_prime_UTR	1815951	1816070	.	-	.	Parent=Os04t0128900-01
Chr04	irgsp1_rep	CDS	1814919	1815950	.	-	0	Parent=Os04t0128900-01
Chr04	irgsp1_rep	CDS	1814596	1814823	.	-	0	Parent=Os04t0128900-01
Chr04	irgsp1_rep	three_prime_UTR	1813960	1814595	.	-	.	Parent=Os04t0128900-01
Chr04	irgsp1_rep	mRNA	1814916	1815226	.	+	.	ID=Os04t0129050-00;Name=Os04t0129050-00;Locus_id=Os04g0129050;Note=Hypothetical protein.;Transcript_evidence=EU972174 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0129050-00
Chr04	irgsp1_rep	CDS	1814916	1815226	.	+	0	Parent=Os04t0129050-00
Chr04	irgsp1_rep	mRNA	1837130	1839583	.	-	.	ID=Os04t0129200-00;Name=Os04t0129200-00;Locus_id=Os04g0129200;Note=Similar to OSIGBa0131J24.2 protein.;Transcript_evidence=AK372556 (DDBJ);ORF_evidence=Q01MU1 (UniProt);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: 3'-5' exonuclease activity (GO:0008408);InterPro=3'-5' exonuclease (IPR002562),Ribonuclease H-like (IPR012337);TENOR=Os04t0129200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	1839529	1839583	.	-	.	Parent=Os04t0129200-00
Chr04	irgsp1_rep	CDS	1839276	1839528	.	-	0	Parent=Os04t0129200-00
Chr04	irgsp1_rep	CDS	1838725	1838901	.	-	2	Parent=Os04t0129200-00
Chr04	irgsp1_rep	CDS	1838419	1838549	.	-	2	Parent=Os04t0129200-00
Chr04	irgsp1_rep	CDS	1838154	1838315	.	-	0	Parent=Os04t0129200-00
Chr04	irgsp1_rep	CDS	1837357	1837467	.	-	0	Parent=Os04t0129200-00
Chr04	irgsp1_rep	CDS	1837215	1837277	.	-	0	Parent=Os04t0129200-00
Chr04	irgsp1_rep	three_prime_UTR	1837130	1837214	.	-	.	Parent=Os04t0129200-00
Chr04	irgsp1_rep	mRNA	1843006	1848257	.	+	.	ID=Os04t0129300-01;Name=Os04t0129300-01;Locus_id=Os04g0129300;Note=YT521-B-like protein family protein.;Transcript_evidence=AK109511 (DDBJ%2C Best hit);ORF_evidence=Q01MU0 (UniProt);InterPro=YTH domain (IPR007275);NIAS_FLcDNA=002-104-G05;Expression=AK109511;TENOR=Os04t0129300-01;KEGG=Os04t0129300-01
Chr04	irgsp1_rep	five_prime_UTR	1843006	1843137	.	+	.	Parent=Os04t0129300-01
Chr04	irgsp1_rep	CDS	1843518	1843650	.	+	0	Parent=Os04t0129300-01
Chr04	irgsp1_rep	CDS	1843769	1843842	.	+	2	Parent=Os04t0129300-01
Chr04	irgsp1_rep	CDS	1844245	1844655	.	+	0	Parent=Os04t0129300-01
Chr04	irgsp1_rep	CDS	1844788	1845738	.	+	0	Parent=Os04t0129300-01
Chr04	irgsp1_rep	CDS	1846375	1846587	.	+	0	Parent=Os04t0129300-01
Chr04	irgsp1_rep	CDS	1846905	1847108	.	+	0	Parent=Os04t0129300-01
Chr04	irgsp1_rep	CDS	1847934	1847975	.	+	0	Parent=Os04t0129300-01
Chr04	irgsp1_rep	three_prime_UTR	1847976	1848257	.	+	.	Parent=Os04t0129300-01
Chr04	irgsp1_rep	mRNA	1844672	1846498	.	-	.	ID=Os04t0129350-01;Name=Os04t0129350-01;Locus_id=Os04g0129350;Note=Hypothetical gene.;Transcript_evidence=AK288740 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090064B10;TENOR=Os04t0129350-01;KEGG=Os04t0129350-01
Chr04	irgsp1_rep	five_prime_UTR	1845167	1846498	.	-	.	Parent=Os04t0129350-01
Chr04	irgsp1_rep	CDS	1844936	1845166	.	-	0	Parent=Os04t0129350-01
Chr04	irgsp1_rep	three_prime_UTR	1844672	1844935	.	-	.	Parent=Os04t0129350-01
Chr04	irgsp1_rep	mRNA	1848749	1849281	.	-	.	ID=Os04t0129400-01;Name=Os04t0129400-01;Locus_id=Os04g0129400;Oryzabase Gene Name Synonym(s)=DUF1644 family protein;Note=Non-protein coding transcript.;Transcript_evidence=AK059167 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-023-E03;Oryzabase=19990;TENOR=Os04t0129400-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	exon	1848749	1849281	.	-	.	Parent=Os04t0129400-01
Chr04	irgsp1_rep	mRNA	1857915	1865237	.	+	.	ID=Os04t0129500-01;Name=Os04t0129500-01;Locus_id=Os04g0129500;Note=Gelsolin region domain containing protein.;Transcript_evidence=AK120404 (DDBJ%2C Best hit);ORF_evidence=Q01MT8 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888),Cellular Component: COPII vesicle coat (GO:0030127),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=von Willebrand factor%2C type A (IPR002035),Zinc finger%2C Sec23/Sec24-type (IPR006895),Sec23/Sec24%2C trunk domain (IPR006896),Sec23/Sec24%2C helical domain (IPR006900),Sec23/Sec24 beta-sandwich (IPR012990);NIAS_FLcDNA=J013088L21;TENOR=Os04t0129500-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	1857915	1858016	.	+	.	Parent=Os04t0129500-01
Chr04	irgsp1_rep	five_prime_UTR	1858156	1858165	.	+	.	Parent=Os04t0129500-01
Chr04	irgsp1_rep	CDS	1858166	1859218	.	+	0	Parent=Os04t0129500-01
Chr04	irgsp1_rep	CDS	1859301	1859436	.	+	0	Parent=Os04t0129500-01
Chr04	irgsp1_rep	CDS	1861307	1861497	.	+	2	Parent=Os04t0129500-01
Chr04	irgsp1_rep	CDS	1861651	1861758	.	+	0	Parent=Os04t0129500-01
Chr04	irgsp1_rep	CDS	1861872	1862075	.	+	0	Parent=Os04t0129500-01
Chr04	irgsp1_rep	CDS	1862165	1862396	.	+	0	Parent=Os04t0129500-01
Chr04	irgsp1_rep	CDS	1862473	1862622	.	+	2	Parent=Os04t0129500-01
Chr04	irgsp1_rep	CDS	1862701	1862857	.	+	2	Parent=Os04t0129500-01
Chr04	irgsp1_rep	CDS	1863263	1863390	.	+	1	Parent=Os04t0129500-01
Chr04	irgsp1_rep	CDS	1863482	1863804	.	+	2	Parent=Os04t0129500-01
Chr04	irgsp1_rep	CDS	1864145	1864330	.	+	0	Parent=Os04t0129500-01
Chr04	irgsp1_rep	CDS	1864543	1864770	.	+	0	Parent=Os04t0129500-01
Chr04	irgsp1_rep	three_prime_UTR	1864771	1865237	.	+	.	Parent=Os04t0129500-01
Chr04	irgsp1_rep	mRNA	1859039	1864332	.	+	.	ID=Os04t0129500-02;Name=Os04t0129500-02;Locus_id=Os04g0129500;Note=Similar to OSIGBa0131J24.5 protein.;Transcript_evidence=AK071986 (DDBJ%2C Best hit);ORF_evidence=Q01MT8 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888),Cellular Component: COPII vesicle coat (GO:0030127),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C Sec23/Sec24-type (IPR006895),Sec23/Sec24%2C trunk domain (IPR006896),Sec23/Sec24%2C helical domain (IPR006900),Sec23/Sec24 beta-sandwich (IPR012990);NIAS_FLcDNA=J013094J05;TENOR=Os04t0129500-02
Chr04	irgsp1_rep	CDS	1859039	1859218	.	+	0	Parent=Os04t0129500-02
Chr04	irgsp1_rep	CDS	1859301	1859436	.	+	0	Parent=Os04t0129500-02
Chr04	irgsp1_rep	CDS	1861307	1861497	.	+	2	Parent=Os04t0129500-02
Chr04	irgsp1_rep	CDS	1861651	1861758	.	+	0	Parent=Os04t0129500-02
Chr04	irgsp1_rep	CDS	1861872	1862075	.	+	0	Parent=Os04t0129500-02
Chr04	irgsp1_rep	CDS	1862165	1862396	.	+	0	Parent=Os04t0129500-02
Chr04	irgsp1_rep	CDS	1862473	1862622	.	+	2	Parent=Os04t0129500-02
Chr04	irgsp1_rep	CDS	1862701	1862857	.	+	2	Parent=Os04t0129500-02
Chr04	irgsp1_rep	CDS	1863263	1863390	.	+	1	Parent=Os04t0129500-02
Chr04	irgsp1_rep	CDS	1863482	1863804	.	+	2	Parent=Os04t0129500-02
Chr04	irgsp1_rep	CDS	1864145	1864332	.	+	0	Parent=Os04t0129500-02
Chr04	irgsp1_rep	mRNA	1862226	1865231	.	+	.	ID=Os04t0129500-03;Name=Os04t0129500-03;Locus_id=Os04g0129500;Note=Similar to OSIGBa0131J24.5 protein.;Transcript_evidence=AK071693 (DDBJ%2C Best hit);ORF_evidence=Q01MT8 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888),Cellular Component: COPII vesicle coat (GO:0030127);InterPro=Sec23/Sec24%2C trunk domain (IPR006896),Sec23/Sec24%2C helical domain (IPR006900),Sec23/Sec24 beta-sandwich (IPR012990);NIAS_FLcDNA=J023108J23;Expression=AK071693;TENOR=Os04t0129500-03;KEGG=Os04t0129500-03
Chr04	irgsp1_rep	five_prime_UTR	1862226	1862227	.	+	.	Parent=Os04t0129500-03
Chr04	irgsp1_rep	CDS	1862228	1862396	.	+	0	Parent=Os04t0129500-03
Chr04	irgsp1_rep	CDS	1862473	1862622	.	+	2	Parent=Os04t0129500-03
Chr04	irgsp1_rep	CDS	1862701	1862857	.	+	2	Parent=Os04t0129500-03
Chr04	irgsp1_rep	CDS	1863263	1863390	.	+	1	Parent=Os04t0129500-03
Chr04	irgsp1_rep	CDS	1863482	1863804	.	+	2	Parent=Os04t0129500-03
Chr04	irgsp1_rep	CDS	1864145	1864330	.	+	0	Parent=Os04t0129500-03
Chr04	irgsp1_rep	CDS	1864543	1864770	.	+	0	Parent=Os04t0129500-03
Chr04	irgsp1_rep	three_prime_UTR	1864771	1865231	.	+	.	Parent=Os04t0129500-03
Chr04	irgsp1_rep	mRNA	1866264	1870065	.	+	.	ID=Os04t0129600-01;Name=Os04t0129600-01;Locus_id=Os04g0129600;Note=Similar to OSIGBa0131J24.6 protein.;Transcript_evidence=AK070089 (DDBJ%2C Best hit);ORF_evidence=Q01MT7 (UniProt);InterPro=CytoChrome oxidase assembly protein 1 (IPR014807);NIAS_FLcDNA=J023041J01;Expression=AK070089;TENOR=Os04t0129600-01;KEGG=Os04t0129600-01
Chr04	irgsp1_rep	CDS	1866264	1866539	.	+	0	Parent=Os04t0129600-01
Chr04	irgsp1_rep	CDS	1866838	1867021	.	+	0	Parent=Os04t0129600-01
Chr04	irgsp1_rep	CDS	1869419	1869636	.	+	2	Parent=Os04t0129600-01
Chr04	irgsp1_rep	three_prime_UTR	1869637	1870065	.	+	.	Parent=Os04t0129600-01
Chr04	irgsp1_rep	mRNA	1874562	1876811	.	-	.	ID=Os04t0129900-01;Name=Os04t0129900-01;Locus_id=Os04g0129900;Note=Similar to OSIGBa0103I21.1 protein.;Transcript_evidence=AK241801 (DDBJ%2C Best hit);ORF_evidence=Q01MZ7 (UniProt);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Dynamin central domain (IPR000375),Dynamin%2C GTPase domain (IPR001401),Dynamin GTPase effector (IPR003130),GTPase effector domain%2C GED (IPR020850),Dynamin (IPR022812);NIAS_FLcDNA=J065208J24;TENOR=Os04t0129900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	1876811	1876811	.	-	.	Parent=Os04t0129900-01
Chr04	irgsp1_rep	CDS	1875188	1876810	.	-	0	Parent=Os04t0129900-01
Chr04	irgsp1_rep	CDS	1874621	1875052	.	-	0	Parent=Os04t0129900-01
Chr04	irgsp1_rep	three_prime_UTR	1874562	1874620	.	-	.	Parent=Os04t0129900-01
Chr04	irgsp1_rep	mRNA	1878061	1878624	.	-	.	ID=Os04t0130433-00;Name=Os04t0130433-00;Locus_id=Os04g0130433;Note=UDP-glucuronosyl/UDP-glucosyltransferase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FDG1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os04t0130433-00
Chr04	irgsp1_rep	CDS	1878061	1878624	.	-	0	Parent=Os04t0130433-00
Chr04	irgsp1_rep	mRNA	1960956	1965918	.	+	.	ID=Os04t0131500-01;Name=Os04t0131500-01;Locus_id=Os04g0131500;Note=Hypothetical protein.;Transcript_evidence=AK288585 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J090049P09;TENOR=Os04t0131500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	1960956	1960968	.	+	.	Parent=Os04t0131500-01
Chr04	irgsp1_rep	CDS	1960969	1961232	.	+	0	Parent=Os04t0131500-01
Chr04	irgsp1_rep	three_prime_UTR	1961233	1965918	.	+	.	Parent=Os04t0131500-01
Chr04	irgsp1_rep	mRNA	1967364	1971683	.	+	.	ID=Os04t0131800-00;Name=Os04t0131800-00;Locus_id=Os04g0131800;Note=Similar to OSIGBa0103I21.6 protein.;Transcript_evidence=AK361999 (DDBJ);ORF_evidence=Q01MZ2 (UniProt);InterPro=Carotenoid oxygenase (IPR004294);TENOR=Os04t0131800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	1967364	1967860	.	+	.	Parent=Os04t0131800-00
Chr04	irgsp1_rep	five_prime_UTR	1970811	1971151	.	+	.	Parent=Os04t0131800-00
Chr04	irgsp1_rep	CDS	1971152	1971673	.	+	0	Parent=Os04t0131800-00
Chr04	irgsp1_rep	three_prime_UTR	1971674	1971683	.	+	.	Parent=Os04t0131800-00
Chr04	irgsp1_rep	mRNA	1974598	1981816	.	-	.	ID=Os04t0131850-00;Name=Os04t0131850-00;Locus_id=Os04g0131850;Note=Similar to UDP-glucose:sterol glucosyltransferase.;Transcript_evidence=ab initio prediction;ORF_evidence=O22678 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os04t0131850-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	1981757	1981816	.	-	0	Parent=Os04t0131850-00
Chr04	irgsp1_rep	CDS	1980370	1980547	.	-	0	Parent=Os04t0131850-00
Chr04	irgsp1_rep	CDS	1979270	1979400	.	-	2	Parent=Os04t0131850-00
Chr04	irgsp1_rep	CDS	1978294	1978396	.	-	0	Parent=Os04t0131850-00
Chr04	irgsp1_rep	CDS	1978114	1978190	.	-	2	Parent=Os04t0131850-00
Chr04	irgsp1_rep	CDS	1977622	1977669	.	-	0	Parent=Os04t0131850-00
Chr04	irgsp1_rep	CDS	1977209	1977358	.	-	0	Parent=Os04t0131850-00
Chr04	irgsp1_rep	CDS	1975223	1975372	.	-	0	Parent=Os04t0131850-00
Chr04	irgsp1_rep	CDS	1974598	1974696	.	-	0	Parent=Os04t0131850-00
Chr04	irgsp1_rep	mRNA	1985641	1997936	.	-	.	ID=Os04t0131900-01;Name=Os04t0131900-01;Locus_id=Os04g0131900;Note=Similar to UDP-glucose:sterol glucosyltransferase (EC 2.4.1.173).;Transcript_evidence=AK064088 (DDBJ%2C Best hit);ORF_evidence=O22678 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: metabolic process (GO:0008152),Biological Process: lipid glycosylation (GO:0030259),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213),Glycosyl transferase%2C family 28 (IPR004276);NIAS_FLcDNA=002-100-C05;Expression=AK064088;TENOR=Os04t0131900-01;KEGG=Os04t0131900-01 (EC:2.4.1.173)
Chr04	irgsp1_rep	five_prime_UTR	1997792	1997936	.	-	.	Parent=Os04t0131900-01
Chr04	irgsp1_rep	CDS	1997656	1997791	.	-	0	Parent=Os04t0131900-01
Chr04	irgsp1_rep	CDS	1996654	1996835	.	-	2	Parent=Os04t0131900-01
Chr04	irgsp1_rep	CDS	1995650	1995892	.	-	0	Parent=Os04t0131900-01
Chr04	irgsp1_rep	CDS	1995397	1995508	.	-	0	Parent=Os04t0131900-01
Chr04	irgsp1_rep	CDS	1995132	1995302	.	-	2	Parent=Os04t0131900-01
Chr04	irgsp1_rep	CDS	1994252	1994315	.	-	2	Parent=Os04t0131900-01
Chr04	irgsp1_rep	CDS	1994104	1994161	.	-	1	Parent=Os04t0131900-01
Chr04	irgsp1_rep	CDS	1991664	1991841	.	-	0	Parent=Os04t0131900-01
Chr04	irgsp1_rep	CDS	1989974	1990104	.	-	2	Parent=Os04t0131900-01
Chr04	irgsp1_rep	CDS	1988768	1988870	.	-	0	Parent=Os04t0131900-01
Chr04	irgsp1_rep	CDS	1988588	1988664	.	-	2	Parent=Os04t0131900-01
Chr04	irgsp1_rep	CDS	1988241	1988288	.	-	0	Parent=Os04t0131900-01
Chr04	irgsp1_rep	CDS	1987827	1987976	.	-	0	Parent=Os04t0131900-01
Chr04	irgsp1_rep	CDS	1986029	1986205	.	-	0	Parent=Os04t0131900-01
Chr04	irgsp1_rep	three_prime_UTR	1985641	1986028	.	-	.	Parent=Os04t0131900-01
Chr04	irgsp1_rep	mRNA	2019241	2026428	.	+	.	ID=Os04t0132300-01;Name=Os04t0132300-01;Locus_id=Os04g0132300;Note=Similar to cePP protein.;Transcript_evidence=AK121974 (DDBJ%2C Best hit);ORF_evidence=NP_001149638.1 (RefSeq);InterPro=A1 cistron-splicing factor%2C AAR2 (IPR007946);NIAS_FLcDNA=J033108I08;TENOR=Os04t0132300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	2019241	2019242	.	+	.	Parent=Os04t0132300-01
Chr04	irgsp1_rep	CDS	2019243	2019365	.	+	0	Parent=Os04t0132300-01
Chr04	irgsp1_rep	CDS	2019453	2019535	.	+	0	Parent=Os04t0132300-01
Chr04	irgsp1_rep	CDS	2020633	2020690	.	+	1	Parent=Os04t0132300-01
Chr04	irgsp1_rep	CDS	2021450	2021509	.	+	0	Parent=Os04t0132300-01
Chr04	irgsp1_rep	CDS	2022477	2022606	.	+	0	Parent=Os04t0132300-01
Chr04	irgsp1_rep	CDS	2022692	2022918	.	+	2	Parent=Os04t0132300-01
Chr04	irgsp1_rep	CDS	2023097	2023189	.	+	0	Parent=Os04t0132300-01
Chr04	irgsp1_rep	CDS	2023266	2023337	.	+	0	Parent=Os04t0132300-01
Chr04	irgsp1_rep	CDS	2024107	2024139	.	+	0	Parent=Os04t0132300-01
Chr04	irgsp1_rep	CDS	2024263	2024403	.	+	0	Parent=Os04t0132300-01
Chr04	irgsp1_rep	CDS	2025258	2025314	.	+	0	Parent=Os04t0132300-01
Chr04	irgsp1_rep	CDS	2025780	2025866	.	+	0	Parent=Os04t0132300-01
Chr04	irgsp1_rep	CDS	2025952	2025987	.	+	0	Parent=Os04t0132300-01
Chr04	irgsp1_rep	three_prime_UTR	2025988	2026017	.	+	.	Parent=Os04t0132300-01
Chr04	irgsp1_rep	three_prime_UTR	2026213	2026428	.	+	.	Parent=Os04t0132300-01
Chr04	irgsp1_rep	mRNA	2034450	2037776	.	-	.	ID=Os04t0132400-01;Name=Os04t0132400-01;Locus_id=Os04g0132400;Note=Hypothetical protein.;Transcript_evidence=AK110400 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-165-F08;Expression=AK110400;TENOR=Os04t0132400-01;KEGG=Os04t0132400-01
Chr04	irgsp1_rep	five_prime_UTR	2037584	2037776	.	-	.	Parent=Os04t0132400-01
Chr04	irgsp1_rep	five_prime_UTR	2035567	2037417	.	-	.	Parent=Os04t0132400-01
Chr04	irgsp1_rep	CDS	2034514	2035566	.	-	0	Parent=Os04t0132400-01
Chr04	irgsp1_rep	three_prime_UTR	2034450	2034513	.	-	.	Parent=Os04t0132400-01
Chr04	irgsp1_rep	mRNA	2034480	2038816	.	+	.	ID=Os04t0132500-01;Name=Os04t0132500-01;Locus_id=Os04g0132500;CGSNL Gene Symbol=CTB4A;CGSNL Gene Name=COLD TOLERANCE AT BOOTING STAGE 4A;Oryzabase Gene Symbol Synonym(s)=OsRLCK127%2C RLCK127%2C OsCTB4a%2C qCTB4-1;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 127%2C cold tolerance at booting stage 4a;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK121779 (DDBJ%2C Best hit);ORF_evidence=Q9LHP4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033093K02;Oryzabase=18833;Expression=AK121779;TENOR=Os04t0132500-01;KEGG=Os04t0132500-01
Chr04	irgsp1_rep	five_prime_UTR	2034480	2034811	.	+	.	Parent=Os04t0132500-01
Chr04	irgsp1_rep	CDS	2034812	2037761	.	+	0	Parent=Os04t0132500-01
Chr04	irgsp1_rep	CDS	2037988	2038481	.	+	2	Parent=Os04t0132500-01
Chr04	irgsp1_rep	three_prime_UTR	2038482	2038816	.	+	.	Parent=Os04t0132500-01
Chr04	irgsp1_rep	mRNA	2034764	2038824	.	+	.	ID=Os04t0132500-02;Name=Os04t0132500-02;Locus_id=Os04g0132500;RAP-DB Gene Symbol Synonym(s)=CTB4a%2C OsRLCK127%2C RLCK127;RAP-DB Gene Name Synonym(s)=RECEPTOR-LIKE CYTOPLASMIC KINASE 127%2C Receptor-like Cytoplasmic Kinase 127%2C cold tolerance at booting stage 4a;CGSNL Gene Symbol=CTB4A;CGSNL Gene Name=COLD TOLERANCE AT BOOTING STAGE 4A;Oryzabase Gene Symbol Synonym(s)=OsRLCK127%2C RLCK127%2C OsCTB4a%2C qCTB4-1;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 127%2C cold tolerance at booting stage 4a;Note=Leucine-rich repeat receptor-like kinase%2C Cold tolerance;Transcript_evidence=AK112081;ORF_evidence=Q0JF76;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=Leucine-rich repeat domain%2C L domain-like (IPR032675),Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=001-124-H09;Manual Curation=June 23%2C 2017;Literature_PMID=28332574,19825577;Oryzabase=18833;Expression=AK112081;TENOR=Os04t0132500-02;KEGG=Os04t0132500-02
Chr04	irgsp1_rep	five_prime_UTR	2034764	2034811	.	+	.	Parent=Os04t0132500-02
Chr04	irgsp1_rep	CDS	2034812	2037761	.	+	0	Parent=Os04t0132500-02
Chr04	irgsp1_rep	CDS	2037988	2038481	.	+	2	Parent=Os04t0132500-02
Chr04	irgsp1_rep	three_prime_UTR	2038482	2038824	.	+	.	Parent=Os04t0132500-02
Chr04	irgsp1_rep	mRNA	2069999	2071784	.	-	.	ID=Os04t0132900-01;Name=Os04t0132900-01;Locus_id=Os04g0132900;Note=Conserved hypothetical protein.;Transcript_evidence=AK240980 (DDBJ%2C Best hit);ORF_evidence=NP_001173745.1 (RefSeq);NIAS_FLcDNA=J065049J20;TENOR=Os04t0132900-01;KEGG=Os04t0132900-01
Chr04	irgsp1_rep	five_prime_UTR	2071746	2071784	.	-	.	Parent=Os04t0132900-01
Chr04	irgsp1_rep	CDS	2071620	2071745	.	-	0	Parent=Os04t0132900-01
Chr04	irgsp1_rep	CDS	2071495	2071532	.	-	0	Parent=Os04t0132900-01
Chr04	irgsp1_rep	CDS	2071268	2071328	.	-	1	Parent=Os04t0132900-01
Chr04	irgsp1_rep	three_prime_UTR	2071241	2071267	.	-	.	Parent=Os04t0132900-01
Chr04	irgsp1_rep	three_prime_UTR	2069999	2070246	.	-	.	Parent=Os04t0132900-01
Chr04	irgsp1_rep	mRNA	2231909	2232333	.	-	.	ID=Os04t0134101-00;Name=Os04t0134101-00;Locus_id=Os04g0134101;Note=Non-protein coding transcript.;Transcript_evidence=CT835063 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os04t0134101-00
Chr04	irgsp1_rep	exon	2231909	2232333	.	-	.	Parent=Os04t0134101-00
Chr04	irgsp1_rep	mRNA	2281882	2282178	.	-	.	ID=Os04t0134800-01;Name=Os04t0134800-01;Locus_id=Os04g0134800;CGSNL Gene Symbol=AM1;CGSNL Gene Name=ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 1;Oryzabase Gene Symbol Synonym(s)=AM1%2C prx53;Oryzabase Gene Name Synonym(s)=class III peroxidase 53;Note=Similar to Class III peroxidase 53.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5U1P0 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255);Oryzabase=8180;TENOR=Os04t0134800-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	2281882	2282178	.	-	0	Parent=Os04t0134800-01
Chr04	irgsp1_rep	mRNA	2300969	2302931	.	+	.	ID=Os04t0135400-00;Name=Os04t0135400-00;Locus_id=Os04g0135400;CGSNL Gene Symbol=RLCK128;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 128;Oryzabase Gene Symbol Synonym(s)=OsRLCK128;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 128;Note=Similar to OSIGBa0140L04.2 protein.;Transcript_evidence=CU406373 (DDBJ%2C Best hit);ORF_evidence=Q01MT2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18834;TENOR=Os04t0135400-00;KEGG=Os04t0135400-00 (EC:2.7.11.1)
Chr04	irgsp1_rep	CDS	2300969	2301150	.	+	0	Parent=Os04t0135400-00
Chr04	irgsp1_rep	CDS	2302059	2302710	.	+	1	Parent=Os04t0135400-00
Chr04	irgsp1_rep	three_prime_UTR	2302711	2302931	.	+	.	Parent=Os04t0135400-00
Chr04	irgsp1_rep	mRNA	2371167	2372469	.	+	.	ID=Os04t0136000-00;Name=Os04t0136000-00;Locus_id=Os04g0136000;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK366369 (DDBJ);ORF_evidence=Q7X7I4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009);TENOR=Os04t0136000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	2371167	2371697	.	+	0	Parent=Os04t0136000-00
Chr04	irgsp1_rep	three_prime_UTR	2371698	2371711	.	+	.	Parent=Os04t0136000-00
Chr04	irgsp1_rep	three_prime_UTR	2371878	2372018	.	+	.	Parent=Os04t0136000-00
Chr04	irgsp1_rep	three_prime_UTR	2372072	2372469	.	+	.	Parent=Os04t0136000-00
Chr04	irgsp1_rep	mRNA	2294412	2296054	.	-	.	ID=Os04t0136016-00;Name=Os04t0136016-00;Locus_id=Os04g0136016;Note=Similar to Growth-regulating factor 1.;Transcript_evidence=AK353813 (DDBJ);ORF_evidence=Q9SDZ5 (UniProt);TENOR=Os04t0136016-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	2295820	2296054	.	-	.	Parent=Os04t0136016-00
Chr04	irgsp1_rep	CDS	2295601	2295819	.	-	0	Parent=Os04t0136016-00
Chr04	irgsp1_rep	three_prime_UTR	2295441	2295600	.	-	.	Parent=Os04t0136016-00
Chr04	irgsp1_rep	three_prime_UTR	2294412	2294505	.	-	.	Parent=Os04t0136016-00
Chr04	irgsp1_rep	mRNA	2390278	2396764	.	-	.	ID=Os04t0136200-00;Name=Os04t0136200-00;Locus_id=Os04g0136200;CGSNL Gene Symbol=DAO3;CGSNL Gene Name=DIAMINE OXIDASE 3;Oryzabase Gene Symbol Synonym(s)=OsDAO3%2C OsCuDAO3%2C CuDAO3;Oryzabase Gene Name Synonym(s)=diamine oxidase 3%2C Copper-containing diamine oxidase 3;Note=Similar to OSIGBa0106G07.12 protein.;Transcript_evidence=AK333669 (DDBJ);ORF_evidence=Q01IY5 (UniProt);GO=Biological Process: amine metabolic process (GO:0009308),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: copper ion binding (GO:0005507),Molecular Function: primary amine oxidase activity (GO:0008131),Molecular Function: quinone binding (GO:0048038);InterPro=Copper amine oxidase (IPR000269),Copper amine oxidase%2C C-terminal (IPR015798),Copper amine oxidase%2C N2/N3-terminal (IPR015801),Copper amine oxidase%2C N3-terminal (IPR015802),Copper amine oxidase%2C N-terminal (IPR016182);Oryzabase=21673;TENOR=Os04t0136200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	2396585	2396764	.	-	0	Parent=Os04t0136200-00
Chr04	irgsp1_rep	CDS	2395714	2395826	.	-	0	Parent=Os04t0136200-00
Chr04	irgsp1_rep	CDS	2395261	2395591	.	-	1	Parent=Os04t0136200-00
Chr04	irgsp1_rep	CDS	2394949	2395164	.	-	0	Parent=Os04t0136200-00
Chr04	irgsp1_rep	CDS	2394401	2394637	.	-	0	Parent=Os04t0136200-00
Chr04	irgsp1_rep	CDS	2393763	2393948	.	-	0	Parent=Os04t0136200-00
Chr04	irgsp1_rep	CDS	2392520	2392660	.	-	0	Parent=Os04t0136200-00
Chr04	irgsp1_rep	CDS	2390878	2391146	.	-	0	Parent=Os04t0136200-00
Chr04	irgsp1_rep	CDS	2390521	2390602	.	-	1	Parent=Os04t0136200-00
Chr04	irgsp1_rep	CDS	2390278	2390364	.	-	0	Parent=Os04t0136200-00
Chr04	irgsp1_rep	mRNA	2426978	2429504	.	-	.	ID=Os04t0136700-01;Name=Os04t0136700-01;Locus_id=Os04g0136700;Oryzabase Gene Symbol Synonym(s)=OsCBSX5;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSX5%2C CBS domain containing protein OsCBSX5;Note=Cystathionine beta-synthase%2C core domain containing protein.;Transcript_evidence=AK066843 (DDBJ%2C Best hit);ORF_evidence=Q01N18 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein binding (GO:0005515);InterPro=Cystathionine beta-synthase%2C core (IPR000644),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J013082B01;Oryzabase=10322;Expression=AK066843;TENOR=Os04t0136700-01;KEGG=Os04t0136700-01
Chr04	irgsp1_rep	five_prime_UTR	2429417	2429504	.	-	.	Parent=Os04t0136700-01
Chr04	irgsp1_rep	CDS	2429132	2429416	.	-	0	Parent=Os04t0136700-01
Chr04	irgsp1_rep	CDS	2428870	2429052	.	-	0	Parent=Os04t0136700-01
Chr04	irgsp1_rep	CDS	2427919	2427988	.	-	0	Parent=Os04t0136700-01
Chr04	irgsp1_rep	CDS	2427744	2427815	.	-	2	Parent=Os04t0136700-01
Chr04	irgsp1_rep	CDS	2427189	2427241	.	-	2	Parent=Os04t0136700-01
Chr04	irgsp1_rep	three_prime_UTR	2426978	2427188	.	-	.	Parent=Os04t0136700-01
Chr04	irgsp1_rep	mRNA	2431854	2436566	.	+	.	ID=Os04t0136802-01;Name=Os04t0136802-01;Locus_id=Os04g0136802;Note=Hypothetical gene.;Transcript_evidence=AK288181 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090005H21;TENOR=Os04t0136802-01;KEGG=Os04t0136802-01
Chr04	irgsp1_rep	five_prime_UTR	2431854	2435414	.	+	.	Parent=Os04t0136802-01
Chr04	irgsp1_rep	CDS	2435415	2435699	.	+	0	Parent=Os04t0136802-01
Chr04	irgsp1_rep	three_prime_UTR	2435700	2436566	.	+	.	Parent=Os04t0136802-01
Chr04	irgsp1_rep	mRNA	2441510	2447771	.	+	.	ID=Os04t0136900-01;Name=Os04t0136900-01;Locus_id=Os04g0136900;Note=Similar to OSIGBa0147B06.6 protein.;Transcript_evidence=AK067888 (DDBJ%2C Best hit);ORF_evidence=Q01N17 (UniProt);NIAS_FLcDNA=J013126H20;Expression=AK067888;TENOR=Os04t0136900-01;KEGG=Os04t0136900-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	2441510	2441729	.	+	.	Parent=Os04t0136900-01
Chr04	irgsp1_rep	five_prime_UTR	2445569	2445622	.	+	.	Parent=Os04t0136900-01
Chr04	irgsp1_rep	CDS	2445623	2446520	.	+	0	Parent=Os04t0136900-01
Chr04	irgsp1_rep	CDS	2446601	2446684	.	+	2	Parent=Os04t0136900-01
Chr04	irgsp1_rep	CDS	2447423	2447505	.	+	2	Parent=Os04t0136900-01
Chr04	irgsp1_rep	three_prime_UTR	2447506	2447771	.	+	.	Parent=Os04t0136900-01
Chr04	irgsp1_rep	mRNA	2480533	2485914	.	+	.	ID=Os04t0137201-01;Name=Os04t0137201-01;Locus_id=Os04g0137201;RAP-DB Gene Symbol Synonym(s)=OsPLL4.1;RAP-DB Gene Name Synonym(s)=Pectate lyase-like 4.1;Oryzabase Gene Symbol Synonym(s)=OsPLL4%2C PLL4%2C OsPLL4.1%2C OsPLL4.2;Oryzabase Gene Name Synonym(s)=Pectate lyase-like 4;Note=Pectate lyase-like protein%2C Pollen development;Transcript_evidence=AK242489 (truncated);ORF_evidence=Inferred from literature;InterPro=Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),AmbAllergen (IPR018082),Pectate lyase (IPR002022);NIAS_FLcDNA=J080306K17;Manual Curation=June 28%2C 2018;Literature_PMID=29943288;Oryzabase=22489;TENOR=Os04t0137201-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	2480533	2480657	.	+	0	Parent=Os04t0137201-01
Chr04	irgsp1_rep	CDS	2480831	2480920	.	+	1	Parent=Os04t0137201-01
Chr04	irgsp1_rep	CDS	2481947	2482045	.	+	1	Parent=Os04t0137201-01
Chr04	irgsp1_rep	CDS	2483499	2484141	.	+	1	Parent=Os04t0137201-01
Chr04	irgsp1_rep	CDS	2484515	2484618	.	+	0	Parent=Os04t0137201-01
Chr04	irgsp1_rep	CDS	2484795	2484933	.	+	1	Parent=Os04t0137201-01
Chr04	irgsp1_rep	CDS	2485049	2485270	.	+	0	Parent=Os04t0137201-01
Chr04	irgsp1_rep	three_prime_UTR	2485271	2485914	.	+	.	Parent=Os04t0137201-01
Chr04	irgsp1_rep	mRNA	2483098	2485914	.	+	.	ID=Os04t0137201-02;Name=Os04t0137201-02;Locus_id=Os04g0137201;RAP-DB Gene Symbol Synonym(s)=OsPLL4.2;RAP-DB Gene Name Synonym(s)=Pectate lyase-like 4.2;Oryzabase Gene Symbol Synonym(s)=OsPLL4%2C PLL4%2C OsPLL4.1%2C OsPLL4.2;Oryzabase Gene Name Synonym(s)=Pectate lyase-like 4;Note=Pectate lyase-like protein%2C Splicing variant of OsPLL4;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;InterPro=Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),AmbAllergen (IPR018082),Pectate lyase (IPR002022);Manual Curation=June 28%2C 2018;Literature_PMID=29943288;Oryzabase=22489
Chr04	irgsp1_rep	five_prime_UTR	2483098	2483463	.	+	.	Parent=Os04t0137201-02
Chr04	irgsp1_rep	CDS	2483464	2484141	.	+	0	Parent=Os04t0137201-02
Chr04	irgsp1_rep	CDS	2484515	2484618	.	+	0	Parent=Os04t0137201-02
Chr04	irgsp1_rep	CDS	2484795	2484933	.	+	1	Parent=Os04t0137201-02
Chr04	irgsp1_rep	CDS	2485049	2485270	.	+	0	Parent=Os04t0137201-02
Chr04	irgsp1_rep	three_prime_UTR	2485271	2485914	.	+	.	Parent=Os04t0137201-02
Chr04	irgsp1_rep	mRNA	2502536	2502817	.	-	.	ID=Os04t0137450-00;Name=Os04t0137450-00;Locus_id=Os04g0137450;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001173746.1 (RefSeq);TENOR=Os04t0137450-00;KEGG=Os04t0137450-00
Chr04	irgsp1_rep	CDS	2502536	2502817	.	-	0	Parent=Os04t0137450-00
Chr04	irgsp1_rep	mRNA	2511505	2514700	.	+	.	ID=Os04t0137500-00;Name=Os04t0137500-00;Locus_id=Os04g0137500;Note=Similar to Vacuolar ATP synthase subunit F (EC 3.6.3.14) (V-ATPase F subunit) (Vacuolar proton pump F subunit) (V-ATPase 14 kDa subunit).;Transcript_evidence=CT835057 (DDBJ%2C Best hit);ORF_evidence=A2XQ09 (UniProt);GO=Biological Process: ATP hydrolysis coupled proton transport (GO:0015991),Cellular Component: proton-transporting two-sector ATPase complex%2C catalytic domain (GO:0033178),Cellular Component: proton-transporting V-type ATPase%2C V1 domain (GO:0033180),Molecular Function: hydrogen ion transporting ATP synthase activity%2C rotational mechanism (GO:0046933),Molecular Function: proton-transporting ATPase activity%2C rotational mechanism (GO:0046961);InterPro=ATPase%2C V1 complex%2C subunit F%2C eukaryotic (IPR005772),ATPase%2C V1/A1 complex%2C subunit F (IPR008218);TENOR=Os04t0137500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	2511505	2511622	.	+	.	Parent=Os04t0137500-00
Chr04	irgsp1_rep	five_prime_UTR	2511732	2511740	.	+	.	Parent=Os04t0137500-00
Chr04	irgsp1_rep	CDS	2511741	2511803	.	+	0	Parent=Os04t0137500-00
Chr04	irgsp1_rep	CDS	2513077	2513158	.	+	0	Parent=Os04t0137500-00
Chr04	irgsp1_rep	CDS	2513772	2513854	.	+	2	Parent=Os04t0137500-00
Chr04	irgsp1_rep	CDS	2514376	2514540	.	+	0	Parent=Os04t0137500-00
Chr04	irgsp1_rep	three_prime_UTR	2514541	2514700	.	+	.	Parent=Os04t0137500-00
Chr04	irgsp1_rep	mRNA	2520726	2522451	.	-	.	ID=Os04t0137550-00;Name=Os04t0137550-00;Locus_id=Os04g0137550;Note=Hypothetical protein.;Transcript_evidence=BT041543 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0137550-00
Chr04	irgsp1_rep	five_prime_UTR	2521284	2522451	.	-	.	Parent=Os04t0137550-00
Chr04	irgsp1_rep	CDS	2520852	2521283	.	-	0	Parent=Os04t0137550-00
Chr04	irgsp1_rep	three_prime_UTR	2520726	2520851	.	-	.	Parent=Os04t0137550-00
Chr04	irgsp1_rep	mRNA	2533768	2535289	.	+	.	ID=Os04t0137883-00;Name=Os04t0137883-00;Locus_id=Os04g0137883;Note=Non-protein coding transcript.;Transcript_evidence=tplb0054h05 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os04t0137883-00
Chr04	irgsp1_rep	exon	2533768	2535289	.	+	.	Parent=Os04t0137883-00
Chr04	irgsp1_rep	mRNA	2539347	2540950	.	+	.	ID=Os04t0138432-01;Name=Os04t0138432-01;Locus_id=Os04g0138432;Note=Conserved hypothetical protein.;Transcript_evidence=AK288460 (DDBJ%2C Best hit);ORF_evidence=Q8H4C9 (UniProt);NIAS_FLcDNA=J090035H06;TENOR=Os04t0138432-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	2539347	2540743	.	+	.	Parent=Os04t0138432-01
Chr04	irgsp1_rep	CDS	2540744	2540887	.	+	0	Parent=Os04t0138432-01
Chr04	irgsp1_rep	three_prime_UTR	2540888	2540950	.	+	.	Parent=Os04t0138432-01
Chr04	irgsp1_rep	mRNA	2649112	2649831	.	-	.	ID=Os04t0138800-00;Name=Os04t0138800-00;Locus_id=Os04g0138800;Note=Similar to OSIGBa0140L04.2 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01MT2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os04t0138800-00
Chr04	irgsp1_rep	CDS	2649112	2649831	.	-	0	Parent=Os04t0138800-00
Chr04	irgsp1_rep	mRNA	2667561	2669859	.	-	.	ID=Os04t0139100-00;Name=Os04t0139100-00;Locus_id=Os04g0139100;Note=Similar to H0820C10.1 protein.;Transcript_evidence=AK368821 (DDBJ);ORF_evidence=Q01MP7 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);TENOR=Os04t0139100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	2669847	2669859	.	-	.	Parent=Os04t0139100-00
Chr04	irgsp1_rep	CDS	2667561	2669846	.	-	0	Parent=Os04t0139100-00
Chr04	irgsp1_rep	mRNA	2690138	2695153	.	+	.	ID=Os04t0139201-01;Name=Os04t0139201-01;Locus_id=Os04g0139201;Note=Hypothetical gene.;Transcript_evidence=AK288744 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090064F20;TENOR=Os04t0139201-01;KEGG=Os04t0139201-01
Chr04	irgsp1_rep	five_prime_UTR	2690138	2691524	.	+	.	Parent=Os04t0139201-01
Chr04	irgsp1_rep	CDS	2691525	2692145	.	+	0	Parent=Os04t0139201-01
Chr04	irgsp1_rep	three_prime_UTR	2692146	2695153	.	+	.	Parent=Os04t0139201-01
Chr04	irgsp1_rep	mRNA	2752711	2752971	.	-	.	ID=Os04t0140400-00;Name=Os04t0140400-00;Locus_id=Os04g0140400;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8AUX3 (UniProt);TENOR=Os04t0140400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	2752711	2752971	.	-	0	Parent=Os04t0140400-00
Chr04	irgsp1_rep	mRNA	2755176	2758796	.	-	.	ID=Os04t0140666-01;Name=Os04t0140666-01;Locus_id=Os04g0140666;Note=Similar to OSIGBa0124C14.6 protein.;Transcript_evidence=AK241606 (DDBJ%2C Best hit);ORF_evidence=Q01MT3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine-threonine/tyrosine-protein kinase (IPR001245),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J065184G04;TENOR=Os04t0140666-01;KEGG=Os04t0140666-01
Chr04	irgsp1_rep	CDS	2757983	2758796	.	-	0	Parent=Os04t0140666-01
Chr04	irgsp1_rep	CDS	2755311	2755852	.	-	2	Parent=Os04t0140666-01
Chr04	irgsp1_rep	three_prime_UTR	2755176	2755310	.	-	.	Parent=Os04t0140666-01
Chr04	irgsp1_rep	mRNA	2826150	2830476	.	+	.	ID=Os04t0141400-01;Name=Os04t0141400-01;Locus_id=Os04g0141400;Note=Concanavalin A-like lectin/glucanase domain containing protein.;Transcript_evidence=AK102268 (DDBJ%2C Best hit);ORF_evidence=Q01MT1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Serine/threonine-protein kinase-like domain (IPR017442),Legume lectin%2C beta chain%2C Mn/Ca-binding site (IPR019825);NIAS_FLcDNA=J033088O08;Expression=AK102268;TENOR=Os04t0141400-01;KEGG=Os04t0141400-01
Chr04	irgsp1_rep	five_prime_UTR	2826150	2826197	.	+	.	Parent=Os04t0141400-01
Chr04	irgsp1_rep	CDS	2826198	2827083	.	+	0	Parent=Os04t0141400-01
Chr04	irgsp1_rep	CDS	2828997	2829528	.	+	2	Parent=Os04t0141400-01
Chr04	irgsp1_rep	CDS	2829796	2830318	.	+	1	Parent=Os04t0141400-01
Chr04	irgsp1_rep	three_prime_UTR	2830319	2830476	.	+	.	Parent=Os04t0141400-01
Chr04	irgsp1_rep	mRNA	2863655	2865814	.	+	.	ID=Os04t0141800-00;Name=Os04t0141800-00;Locus_id=Os04g0141800;Note=Similar to OSIGBa0147M20.4 protein.;Transcript_evidence=tplb0008b24 (Wheat FLcDNA);ORF_evidence=Q01MS3 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);TENOR=Os04t0141800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	2863655	2865814	.	+	0	Parent=Os04t0141800-00
Chr04	irgsp1_rep	mRNA	2869484	2870279	.	+	.	ID=Os04t0142100-00;Name=Os04t0142100-00;Locus_id=Os04g0142100;Note=Similar to Salt responsive protein 2.;Transcript_evidence=FP095117 (DDBJ);ORF_evidence=B6D1Q6 (UniProt);TENOR=Os04t0142100-00
Chr04	irgsp1_rep	CDS	2869484	2869984	.	+	0	Parent=Os04t0142100-00
Chr04	irgsp1_rep	three_prime_UTR	2869985	2870279	.	+	.	Parent=Os04t0142100-00
Chr04	irgsp1_rep	mRNA	2889775	2891435	.	-	.	ID=Os04t0142400-01;Name=Os04t0142400-01;Locus_id=Os04g0142400;Note=Conserved hypothetical protein.;Transcript_evidence=AK103013 (DDBJ%2C Best hit);ORF_evidence=B8AUX2 (UniProt);NIAS_FLcDNA=J033116L09;Expression=AK103013;TENOR=Os04t0142400-01;KEGG=Os04t0142400-01
Chr04	irgsp1_rep	five_prime_UTR	2891361	2891435	.	-	.	Parent=Os04t0142400-01
Chr04	irgsp1_rep	CDS	2891358	2891360	.	-	0	Parent=Os04t0142400-01
Chr04	irgsp1_rep	CDS	2891171	2891252	.	-	0	Parent=Os04t0142400-01
Chr04	irgsp1_rep	CDS	2890824	2890966	.	-	2	Parent=Os04t0142400-01
Chr04	irgsp1_rep	CDS	2890390	2890728	.	-	0	Parent=Os04t0142400-01
Chr04	irgsp1_rep	CDS	2889958	2890137	.	-	0	Parent=Os04t0142400-01
Chr04	irgsp1_rep	three_prime_UTR	2889775	2889957	.	-	.	Parent=Os04t0142400-01
Chr04	irgsp1_rep	mRNA	2911041	2913410	.	+	.	ID=Os04t0142850-00;Name=Os04t0142850-00;Locus_id=Os04g0142850;Note=Hypothetical protein.;Transcript_evidence=BT041543 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0142850-00
Chr04	irgsp1_rep	five_prime_UTR	2911041	2911185	.	+	.	Parent=Os04t0142850-00
Chr04	irgsp1_rep	CDS	2911186	2911435	.	+	0	Parent=Os04t0142850-00
Chr04	irgsp1_rep	CDS	2912161	2912453	.	+	2	Parent=Os04t0142850-00
Chr04	irgsp1_rep	three_prime_UTR	2912454	2913410	.	+	.	Parent=Os04t0142850-00
Chr04	irgsp1_rep	mRNA	2959879	2961549	.	+	.	ID=Os04t0143566-00;Name=Os04t0143566-00;Locus_id=Os04g0143566;Note=Hypothetical protein.;Transcript_evidence=BT041543 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0143566-00
Chr04	irgsp1_rep	five_prime_UTR	2959879	2960678	.	+	.	Parent=Os04t0143566-00
Chr04	irgsp1_rep	CDS	2960679	2961419	.	+	0	Parent=Os04t0143566-00
Chr04	irgsp1_rep	three_prime_UTR	2961420	2961549	.	+	.	Parent=Os04t0143566-00
Chr04	irgsp1_rep	mRNA	2983918	2984361	.	+	.	ID=Os04t0143932-00;Name=Os04t0143932-00;Locus_id=Os04g0143932;Note=Similar to Calmodulin.;Transcript_evidence=DQ246164 (DDBJ);ORF_evidence=Q9LDQ9 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand-like domain (IPR011992);TENOR=Os04t0143932-00
Chr04	irgsp1_rep	CDS	2983918	2984061	.	+	0	Parent=Os04t0143932-00
Chr04	irgsp1_rep	three_prime_UTR	2984062	2984361	.	+	.	Parent=Os04t0143932-00
Chr04	irgsp1_rep	mRNA	3113203	3113392	.	-	.	ID=Os04t0144266-00;Name=Os04t0144266-00;Locus_id=Os04g0144266;Note=Non-protein coding transcript.;Transcript_evidence=EU950170 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0144266-00
Chr04	irgsp1_rep	exon	3113203	3113392	.	-	.	Parent=Os04t0144266-00
Chr04	irgsp1_rep	mRNA	3032534	3034101	.	-	.	ID=Os04t0144300-00;Name=Os04t0144300-00;Locus_id=Os04g0144300;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0008b24 (Wheat FLcDNA);ORF_evidence=Q7XL31 (UniProt);TENOR=Os04t0144300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	3033160	3034101	.	-	0	Parent=Os04t0144300-00
Chr04	irgsp1_rep	three_prime_UTR	3033060	3033159	.	-	.	Parent=Os04t0144300-00
Chr04	irgsp1_rep	three_prime_UTR	3032804	3032994	.	-	.	Parent=Os04t0144300-00
Chr04	irgsp1_rep	three_prime_UTR	3032534	3032699	.	-	.	Parent=Os04t0144300-00
Chr04	irgsp1_rep	mRNA	3238927	3243094	.	+	.	ID=Os04t0146300-00;Name=Os04t0146300-00;Locus_id=Os04g0146300;CGSNL Gene Symbol=RLCK130;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 130;Oryzabase Gene Symbol Synonym(s)=OsRLCK130;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 130;Note=Similar to OSIGBa0140L04.3 protein.;Transcript_evidence=AK102268 (DDBJ%2C Secondary hit);ORF_evidence=Q01MT1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Legume lectin%2C beta chain (IPR001220),Concanavalin A-like lectin/glucanase (IPR008985),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Legume lectin%2C beta chain%2C Mn/Ca-binding site (IPR019825);Oryzabase=18836;Expression=AK102268;TENOR=Os04t0146300-00;KEGG=Os04t0146300-00
Chr04	irgsp1_rep	five_prime_UTR	3238927	3238927	.	+	.	Parent=Os04t0146300-00
Chr04	irgsp1_rep	CDS	3238928	3239548	.	+	0	Parent=Os04t0146300-00
Chr04	irgsp1_rep	three_prime_UTR	3239549	3239695	.	+	.	Parent=Os04t0146300-00
Chr04	irgsp1_rep	three_prime_UTR	3241614	3242145	.	+	.	Parent=Os04t0146300-00
Chr04	irgsp1_rep	three_prime_UTR	3242413	3243094	.	+	.	Parent=Os04t0146300-00
Chr04	irgsp1_rep	mRNA	3274018	3274628	.	+	.	ID=Os04t0146800-00;Name=Os04t0146800-00;Locus_id=Os04g0146800;Note=Similar to SDP1 (SUGAR-DEPENDENT1)%3B triacylglycerol lipase.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_196024.1 (RefSeq);TENOR=Os04t0146800-00
Chr04	irgsp1_rep	CDS	3274018	3274166	.	+	0	Parent=Os04t0146800-00
Chr04	irgsp1_rep	CDS	3274562	3274628	.	+	1	Parent=Os04t0146800-00
Chr04	irgsp1_rep	mRNA	3295899	3299480	.	-	.	ID=Os04t0147200-01;Name=Os04t0147200-01;Locus_id=Os04g0147200;Note=Protein of unknown function DUF594 domain containing protein.;Transcript_evidence=AK242819 (DDBJ%2C Best hit);ORF_evidence=Q01MP7 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);NIAS_FLcDNA=J090063K16;TENOR=Os04t0147200-01;KEGG=Os04t0147200-01
Chr04	irgsp1_rep	five_prime_UTR	3299332	3299480	.	-	.	Parent=Os04t0147200-01
Chr04	irgsp1_rep	five_prime_UTR	3298363	3298367	.	-	.	Parent=Os04t0147200-01
Chr04	irgsp1_rep	CDS	3296092	3298362	.	-	0	Parent=Os04t0147200-01
Chr04	irgsp1_rep	three_prime_UTR	3295899	3296091	.	-	.	Parent=Os04t0147200-01
Chr04	irgsp1_rep	mRNA	3310275	3312547	.	+	.	ID=Os04t0147600-01;Name=Os04t0147600-01;Locus_id=Os04g0147600;Note=Hypothetical conserved gene.;Transcript_evidence=AK287851 (DDBJ%2C Best hit);ORF_evidence=Q654S3 (UniProt);NIAS_FLcDNA=J065195P19;TENOR=Os04t0147600-01
Chr04	irgsp1_rep	five_prime_UTR	3310275	3310510	.	+	.	Parent=Os04t0147600-01
Chr04	irgsp1_rep	five_prime_UTR	3310741	3310905	.	+	.	Parent=Os04t0147600-01
Chr04	irgsp1_rep	five_prime_UTR	3311731	3311795	.	+	.	Parent=Os04t0147600-01
Chr04	irgsp1_rep	CDS	3312066	3312547	.	+	0	Parent=Os04t0147600-01
Chr04	irgsp1_rep	mRNA	3411651	3412393	.	-	.	ID=Os04t0149400-01;Name=Os04t0149400-01;Locus_id=Os04g0149400;Note=Conserved hypothetical protein.;Transcript_evidence=AK062765 (DDBJ%2C Best hit);ORF_evidence=A3AQN8 (UniProt);NIAS_FLcDNA=001-106-H07;TENOR=Os04t0149400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	3412314	3412393	.	-	.	Parent=Os04t0149400-01
Chr04	irgsp1_rep	CDS	3412311	3412313	.	-	0	Parent=Os04t0149400-01
Chr04	irgsp1_rep	CDS	3412137	3412218	.	-	0	Parent=Os04t0149400-01
Chr04	irgsp1_rep	CDS	3411846	3411988	.	-	2	Parent=Os04t0149400-01
Chr04	irgsp1_rep	CDS	3411651	3411738	.	-	0	Parent=Os04t0149400-01
Chr04	irgsp1_rep	mRNA	3465253	3470075	.	+	.	ID=Os04t0150300-01;Name=Os04t0150300-01;Locus_id=Os04g0150300;Note=Conserved hypothetical protein.;Transcript_evidence=AK103818 (DDBJ%2C Best hit);ORF_evidence=A3AQN5 (UniProt);NIAS_FLcDNA=J033147F20;TENOR=Os04t0150300-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	3465253	3465711	.	+	.	Parent=Os04t0150300-01
Chr04	irgsp1_rep	five_prime_UTR	3468154	3468347	.	+	.	Parent=Os04t0150300-01
Chr04	irgsp1_rep	CDS	3468348	3470075	.	+	0	Parent=Os04t0150300-01
Chr04	irgsp1_rep	mRNA	3467739	3472291	.	-	.	ID=Os04t0150500-01;Name=Os04t0150500-01;Locus_id=Os04g0150500;Note=Hypothetical gene.;Transcript_evidence=AK288530 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090044M21;TENOR=Os04t0150500-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	3468618	3472291	.	-	.	Parent=Os04t0150500-01
Chr04	irgsp1_rep	CDS	3468285	3468617	.	-	0	Parent=Os04t0150500-01
Chr04	irgsp1_rep	three_prime_UTR	3467739	3468284	.	-	.	Parent=Os04t0150500-01
Chr04	irgsp1_rep	mRNA	3544446	3547962	.	+	.	ID=Os04t0151700-00;Name=Os04t0151700-00;Locus_id=Os04g0151700;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FDI6 (UniProt);TENOR=Os04t0151700-00;KEGG=Os04t0151700-00
Chr04	irgsp1_rep	CDS	3544446	3544499	.	+	0	Parent=Os04t0151700-00
Chr04	irgsp1_rep	CDS	3547567	3547962	.	+	0	Parent=Os04t0151700-00
Chr04	irgsp1_rep	mRNA	3555402	3562902	.	-	.	ID=Os04t0151800-01;Name=Os04t0151800-01;Locus_id=Os04g0151800;CGSNL Gene Symbol=AGO4B;CGSNL Gene Name=ARGONAUTE 4B;Oryzabase Gene Symbol Synonym(s)=OsAGO4b%2C AGO4-1;Oryzabase Gene Name Synonym(s)=Protein argonaute 4B;Note=Argonaute and Dicer protein%2C PAZ domain containing protein.;Transcript_evidence=AK065274 (DDBJ%2C Best hit);ORF_evidence=Q0JF58 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515);InterPro=Argonaute/Dicer protein%2C PAZ (IPR003100),Stem cell self-renewal protein Piwi (IPR003165),Ribonuclease H-like (IPR012337),Domain of unknown function DUF1785 (IPR014811);NIAS_FLcDNA=J013002L10;Oryzabase=8275;Expression=AK065274;TENOR=Os04t0151800-01;KEGG=Os04t0151800-01
Chr04	irgsp1_rep	five_prime_UTR	3562793	3562902	.	-	.	Parent=Os04t0151800-01
Chr04	irgsp1_rep	five_prime_UTR	3560770	3560777	.	-	.	Parent=Os04t0151800-01
Chr04	irgsp1_rep	CDS	3560530	3560769	.	-	0	Parent=Os04t0151800-01
Chr04	irgsp1_rep	CDS	3560215	3560420	.	-	0	Parent=Os04t0151800-01
Chr04	irgsp1_rep	CDS	3559898	3560122	.	-	1	Parent=Os04t0151800-01
Chr04	irgsp1_rep	CDS	3559622	3559758	.	-	1	Parent=Os04t0151800-01
Chr04	irgsp1_rep	CDS	3559380	3559477	.	-	2	Parent=Os04t0151800-01
Chr04	irgsp1_rep	CDS	3559186	3559283	.	-	0	Parent=Os04t0151800-01
Chr04	irgsp1_rep	CDS	3558864	3559029	.	-	1	Parent=Os04t0151800-01
Chr04	irgsp1_rep	CDS	3558652	3558768	.	-	0	Parent=Os04t0151800-01
Chr04	irgsp1_rep	CDS	3558441	3558548	.	-	0	Parent=Os04t0151800-01
Chr04	irgsp1_rep	CDS	3558289	3558351	.	-	0	Parent=Os04t0151800-01
Chr04	irgsp1_rep	CDS	3558092	3558205	.	-	0	Parent=Os04t0151800-01
Chr04	irgsp1_rep	CDS	3557855	3558020	.	-	0	Parent=Os04t0151800-01
Chr04	irgsp1_rep	CDS	3557671	3557783	.	-	2	Parent=Os04t0151800-01
Chr04	irgsp1_rep	CDS	3557449	3557586	.	-	0	Parent=Os04t0151800-01
Chr04	irgsp1_rep	CDS	3557190	3557317	.	-	0	Parent=Os04t0151800-01
Chr04	irgsp1_rep	CDS	3557022	3557087	.	-	1	Parent=Os04t0151800-01
Chr04	irgsp1_rep	CDS	3556830	3556893	.	-	1	Parent=Os04t0151800-01
Chr04	irgsp1_rep	CDS	3556481	3556592	.	-	0	Parent=Os04t0151800-01
Chr04	irgsp1_rep	CDS	3556307	3556380	.	-	2	Parent=Os04t0151800-01
Chr04	irgsp1_rep	CDS	3556113	3556207	.	-	0	Parent=Os04t0151800-01
Chr04	irgsp1_rep	CDS	3555998	3556029	.	-	1	Parent=Os04t0151800-01
Chr04	irgsp1_rep	CDS	3555725	3555900	.	-	2	Parent=Os04t0151800-01
Chr04	irgsp1_rep	three_prime_UTR	3555402	3555724	.	-	.	Parent=Os04t0151800-01
Chr04	irgsp1_rep	mRNA	3555377	3562793	.	-	.	ID=Os04t0151800-02;Name=Os04t0151800-02;Locus_id=Os04g0151800;CGSNL Gene Symbol=AGO4B;CGSNL Gene Name=ARGONAUTE 4B;Oryzabase Gene Symbol Synonym(s)=OsAGO4b%2C AGO4-1;Oryzabase Gene Name Synonym(s)=Protein argonaute 4B;Note=Argonaute and Dicer protein%2C PAZ domain containing protein.;Transcript_evidence=AK122078 (DDBJ%2C Best hit);ORF_evidence=Q0JF58 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515);InterPro=Argonaute/Dicer protein%2C PAZ (IPR003100),Stem cell self-renewal protein Piwi (IPR003165),Ribonuclease H-like (IPR012337),Domain of unknown function DUF1785 (IPR014811);NIAS_FLcDNA=J033119H08;Oryzabase=8275;Expression=AK122078;TENOR=Os04t0151800-02;KEGG=Os04t0151800-02
Chr04	irgsp1_rep	five_prime_UTR	3562502	3562793	.	-	.	Parent=Os04t0151800-02
Chr04	irgsp1_rep	five_prime_UTR	3560770	3560777	.	-	.	Parent=Os04t0151800-02
Chr04	irgsp1_rep	CDS	3560530	3560769	.	-	0	Parent=Os04t0151800-02
Chr04	irgsp1_rep	CDS	3560215	3560420	.	-	0	Parent=Os04t0151800-02
Chr04	irgsp1_rep	CDS	3559898	3560122	.	-	1	Parent=Os04t0151800-02
Chr04	irgsp1_rep	CDS	3559622	3559758	.	-	1	Parent=Os04t0151800-02
Chr04	irgsp1_rep	CDS	3559380	3559477	.	-	2	Parent=Os04t0151800-02
Chr04	irgsp1_rep	CDS	3559186	3559283	.	-	0	Parent=Os04t0151800-02
Chr04	irgsp1_rep	CDS	3558864	3559029	.	-	1	Parent=Os04t0151800-02
Chr04	irgsp1_rep	CDS	3558652	3558768	.	-	0	Parent=Os04t0151800-02
Chr04	irgsp1_rep	CDS	3558441	3558548	.	-	0	Parent=Os04t0151800-02
Chr04	irgsp1_rep	CDS	3558289	3558351	.	-	0	Parent=Os04t0151800-02
Chr04	irgsp1_rep	CDS	3558092	3558205	.	-	0	Parent=Os04t0151800-02
Chr04	irgsp1_rep	CDS	3557855	3558020	.	-	0	Parent=Os04t0151800-02
Chr04	irgsp1_rep	CDS	3557671	3557783	.	-	2	Parent=Os04t0151800-02
Chr04	irgsp1_rep	CDS	3557449	3557586	.	-	0	Parent=Os04t0151800-02
Chr04	irgsp1_rep	CDS	3557190	3557317	.	-	0	Parent=Os04t0151800-02
Chr04	irgsp1_rep	CDS	3557022	3557087	.	-	1	Parent=Os04t0151800-02
Chr04	irgsp1_rep	CDS	3556830	3556893	.	-	1	Parent=Os04t0151800-02
Chr04	irgsp1_rep	CDS	3556481	3556592	.	-	0	Parent=Os04t0151800-02
Chr04	irgsp1_rep	CDS	3556307	3556380	.	-	2	Parent=Os04t0151800-02
Chr04	irgsp1_rep	CDS	3556113	3556207	.	-	0	Parent=Os04t0151800-02
Chr04	irgsp1_rep	CDS	3555998	3556029	.	-	1	Parent=Os04t0151800-02
Chr04	irgsp1_rep	CDS	3555725	3555900	.	-	2	Parent=Os04t0151800-02
Chr04	irgsp1_rep	three_prime_UTR	3555377	3555724	.	-	.	Parent=Os04t0151800-02
Chr04	irgsp1_rep	mRNA	3555425	3558770	.	-	.	ID=Os04t0151800-03;Name=Os04t0151800-03;Locus_id=Os04g0151800;CGSNL Gene Symbol=AGO4B;CGSNL Gene Name=ARGONAUTE 4B;Oryzabase Gene Symbol Synonym(s)=OsAGO4b%2C AGO4-1;Oryzabase Gene Name Synonym(s)=Protein argonaute 4B;Note=Similar to Protein argonaute 4B.;Transcript_evidence=AK119248 (DDBJ%2C Best hit);ORF_evidence=Q0JF58 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515);InterPro=Argonaute/Dicer protein%2C PAZ (IPR003100),Stem cell self-renewal protein Piwi (IPR003165),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=001-121-C06;Oryzabase=8275;Expression=AK119248;TENOR=Os04t0151800-03;KEGG=Os04t0151800-03
Chr04	irgsp1_rep	five_prime_UTR	3558769	3558770	.	-	.	Parent=Os04t0151800-03
Chr04	irgsp1_rep	CDS	3558652	3558768	.	-	0	Parent=Os04t0151800-03
Chr04	irgsp1_rep	CDS	3558441	3558548	.	-	0	Parent=Os04t0151800-03
Chr04	irgsp1_rep	CDS	3558289	3558351	.	-	0	Parent=Os04t0151800-03
Chr04	irgsp1_rep	CDS	3558092	3558205	.	-	0	Parent=Os04t0151800-03
Chr04	irgsp1_rep	CDS	3557855	3558020	.	-	0	Parent=Os04t0151800-03
Chr04	irgsp1_rep	CDS	3557671	3557783	.	-	2	Parent=Os04t0151800-03
Chr04	irgsp1_rep	CDS	3557449	3557586	.	-	0	Parent=Os04t0151800-03
Chr04	irgsp1_rep	CDS	3557190	3557317	.	-	0	Parent=Os04t0151800-03
Chr04	irgsp1_rep	CDS	3557022	3557087	.	-	1	Parent=Os04t0151800-03
Chr04	irgsp1_rep	CDS	3556830	3556893	.	-	1	Parent=Os04t0151800-03
Chr04	irgsp1_rep	CDS	3556481	3556592	.	-	0	Parent=Os04t0151800-03
Chr04	irgsp1_rep	CDS	3556307	3556380	.	-	2	Parent=Os04t0151800-03
Chr04	irgsp1_rep	CDS	3556113	3556207	.	-	0	Parent=Os04t0151800-03
Chr04	irgsp1_rep	CDS	3555998	3556029	.	-	1	Parent=Os04t0151800-03
Chr04	irgsp1_rep	CDS	3555725	3555900	.	-	2	Parent=Os04t0151800-03
Chr04	irgsp1_rep	three_prime_UTR	3555425	3555724	.	-	.	Parent=Os04t0151800-03
Chr04	irgsp1_rep	mRNA	3555425	3557588	.	-	.	ID=Os04t0151800-04;Name=Os04t0151800-04;Locus_id=Os04g0151800;CGSNL Gene Symbol=AGO4B;CGSNL Gene Name=ARGONAUTE 4B;Oryzabase Gene Symbol Synonym(s)=OsAGO4b%2C AGO4-1;Oryzabase Gene Name Synonym(s)=Protein argonaute 4B;Note=Similar to H0820C10.3 protein.;Transcript_evidence=AK104539 (DDBJ%2C Best hit),AK060907 (DDBJ%2C Best hit);ORF_evidence=Q01MP5 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515);InterPro=Stem cell self-renewal protein Piwi (IPR003165),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=006-304-H02,001-035-F07;Oryzabase=8275;Expression=AK104539;TENOR=Os04t0151800-04;KEGG=Os04t0151800-04
Chr04	irgsp1_rep	five_prime_UTR	3557587	3557588	.	-	.	Parent=Os04t0151800-04
Chr04	irgsp1_rep	CDS	3557449	3557586	.	-	0	Parent=Os04t0151800-04
Chr04	irgsp1_rep	CDS	3557190	3557317	.	-	0	Parent=Os04t0151800-04
Chr04	irgsp1_rep	CDS	3557022	3557087	.	-	1	Parent=Os04t0151800-04
Chr04	irgsp1_rep	CDS	3556830	3556893	.	-	1	Parent=Os04t0151800-04
Chr04	irgsp1_rep	CDS	3556481	3556592	.	-	0	Parent=Os04t0151800-04
Chr04	irgsp1_rep	CDS	3556307	3556380	.	-	2	Parent=Os04t0151800-04
Chr04	irgsp1_rep	CDS	3556113	3556207	.	-	0	Parent=Os04t0151800-04
Chr04	irgsp1_rep	CDS	3555998	3556029	.	-	1	Parent=Os04t0151800-04
Chr04	irgsp1_rep	CDS	3555725	3555900	.	-	2	Parent=Os04t0151800-04
Chr04	irgsp1_rep	three_prime_UTR	3555425	3555724	.	-	.	Parent=Os04t0151800-04
Chr04	irgsp1_rep	mRNA	3575397	3581555	.	-	.	ID=Os04t0151900-01;Name=Os04t0151900-01;Locus_id=Os04g0151900;Note=Similar to H0820C10.4 protein.;Transcript_evidence=AK066797 (DDBJ%2C Best hit);ORF_evidence=Q01MP4 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: cysteamine dioxygenase activity (GO:0047800);InterPro=Cupin%2C RmlC-type (IPR011051),Cysteamine dioxygenase (IPR012864),RmlC-like jelly roll fold (IPR014710);NIAS_FLcDNA=J013079L05;TENOR=Os04t0151900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	3581472	3581555	.	-	.	Parent=Os04t0151900-01
Chr04	irgsp1_rep	five_prime_UTR	3578901	3580906	.	-	.	Parent=Os04t0151900-01
Chr04	irgsp1_rep	CDS	3578756	3578900	.	-	0	Parent=Os04t0151900-01
Chr04	irgsp1_rep	CDS	3577023	3577186	.	-	2	Parent=Os04t0151900-01
Chr04	irgsp1_rep	CDS	3576732	3576879	.	-	0	Parent=Os04t0151900-01
Chr04	irgsp1_rep	CDS	3575998	3576210	.	-	2	Parent=Os04t0151900-01
Chr04	irgsp1_rep	CDS	3575780	3575904	.	-	2	Parent=Os04t0151900-01
Chr04	irgsp1_rep	three_prime_UTR	3575397	3575779	.	-	.	Parent=Os04t0151900-01
Chr04	irgsp1_rep	mRNA	3586585	3588677	.	-	.	ID=Os04t0152000-00;Name=Os04t0152000-00;Locus_id=Os04g0152000;Note=Similar to OSIGBa0147M20.4 protein.;Transcript_evidence=AK368415 (DDBJ);ORF_evidence=Q01MS3 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);TENOR=Os04t0152000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	3588667	3588677	.	-	.	Parent=Os04t0152000-00
Chr04	irgsp1_rep	CDS	3586585	3588666	.	-	0	Parent=Os04t0152000-00
Chr04	irgsp1_rep	mRNA	3607354	3608411	.	-	.	ID=Os04t0152200-00;Name=Os04t0152200-00;Locus_id=Os04g0152200;Note=Non-protein coding transcript.;Transcript_evidence=BT041543 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0152200-00
Chr04	irgsp1_rep	exon	3607354	3608411	.	-	.	Parent=Os04t0152200-00
Chr04	irgsp1_rep	mRNA	3607359	3608420	.	+	.	ID=Os04t0152400-00;Name=Os04t0152400-00;Locus_id=Os04g0152400;Note=Similar to OSIGBa0147M20.2 protein.;Transcript_evidence=AK376729 (DDBJ);ORF_evidence=Q01MS5 (UniProt);TENOR=Os04t0152400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	3607359	3607360	.	+	.	Parent=Os04t0152400-00
Chr04	irgsp1_rep	CDS	3607361	3608170	.	+	0	Parent=Os04t0152400-00
Chr04	irgsp1_rep	three_prime_UTR	3608171	3608420	.	+	.	Parent=Os04t0152400-00
Chr04	irgsp1_rep	mRNA	3609046	3613579	.	-	.	ID=Os04t0152500-01;Name=Os04t0152500-01;Locus_id=Os04g0152500;Note=Conserved hypothetical protein.;Transcript_evidence=AK102300 (DDBJ%2C Best hit);ORF_evidence=A3AQQ1 (UniProt);NIAS_FLcDNA=J033089N09;TENOR=Os04t0152500-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	3613267	3613579	.	-	.	Parent=Os04t0152500-01
Chr04	irgsp1_rep	CDS	3613251	3613266	.	-	0	Parent=Os04t0152500-01
Chr04	irgsp1_rep	CDS	3609388	3611330	.	-	2	Parent=Os04t0152500-01
Chr04	irgsp1_rep	three_prime_UTR	3609046	3609387	.	-	.	Parent=Os04t0152500-01
Chr04	irgsp1_rep	mRNA	3635315	3637007	.	-	.	ID=Os04t0152975-00;Name=Os04t0152975-00;Locus_id=Os04g0152975;Note=Hypothetical protein.;Transcript_evidence=BT041543 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0152975-00
Chr04	irgsp1_rep	five_prime_UTR	3635608	3637007	.	-	.	Parent=Os04t0152975-00
Chr04	irgsp1_rep	CDS	3635317	3635607	.	-	0	Parent=Os04t0152975-00
Chr04	irgsp1_rep	three_prime_UTR	3635315	3635316	.	-	.	Parent=Os04t0152975-00
Chr04	irgsp1_rep	mRNA	3635325	3637426	.	+	.	ID=Os04t0153000-00;Name=Os04t0153000-00;Locus_id=Os04g0153000;Note=Similar to OSIGBa0147M20.4 protein.;Transcript_evidence=AK376729 (DDBJ);ORF_evidence=Q01MS3 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);TENOR=Os04t0153000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	3635325	3635326	.	+	.	Parent=Os04t0153000-00
Chr04	irgsp1_rep	CDS	3635327	3637426	.	+	0	Parent=Os04t0153000-00
Chr04	irgsp1_rep	mRNA	3648163	3650213	.	+	.	ID=Os04t0153200-00;Name=Os04t0153200-00;Locus_id=Os04g0153200;Note=Similar to OSIGBa0147M20.2 protein.;Transcript_evidence=tplb0008b24 (Wheat FLcDNA);ORF_evidence=Q01MS5 (UniProt);TENOR=Os04t0153200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	3648163	3648579	.	+	0	Parent=Os04t0153200-00
Chr04	irgsp1_rep	three_prime_UTR	3648580	3649826	.	+	.	Parent=Os04t0153200-00
Chr04	irgsp1_rep	three_prime_UTR	3649895	3650213	.	+	.	Parent=Os04t0153200-00
Chr04	irgsp1_rep	mRNA	3656703	3658026	.	+	.	ID=Os04t0153475-00;Name=Os04t0153475-00;Locus_id=Os04g0153475;Note=Hypothetical gene.;Transcript_evidence=EU972810 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0153475-00;KEGG=Os04t0153475-00
Chr04	irgsp1_rep	five_prime_UTR	3656703	3657307	.	+	.	Parent=Os04t0153475-00
Chr04	irgsp1_rep	CDS	3657308	3657431	.	+	0	Parent=Os04t0153475-00
Chr04	irgsp1_rep	CDS	3657636	3657973	.	+	2	Parent=Os04t0153475-00
Chr04	irgsp1_rep	three_prime_UTR	3657974	3658026	.	+	.	Parent=Os04t0153475-00
Chr04	irgsp1_rep	mRNA	3682118	3684160	.	+	.	ID=Os04t0154000-00;Name=Os04t0154000-00;Locus_id=Os04g0154000;Note=Similar to OSIGBa0147M20.4 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01MS3 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);TENOR=Os04t0154000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	3682118	3684160	.	+	0	Parent=Os04t0154000-00
Chr04	irgsp1_rep	mRNA	3724228	3738716	.	-	.	ID=Os04t0154599-00;Name=Os04t0154599-00;Locus_id=Os04g0154599;Note=Hypothetical protein.;Transcript_evidence=BT041543 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0154599-00
Chr04	irgsp1_rep	five_prime_UTR	3737683	3738716	.	-	.	Parent=Os04t0154599-00
Chr04	irgsp1_rep	five_prime_UTR	3724867	3724868	.	-	.	Parent=Os04t0154599-00
Chr04	irgsp1_rep	CDS	3724228	3724866	.	-	0	Parent=Os04t0154599-00
Chr04	irgsp1_rep	mRNA	3724238	3739080	.	+	.	ID=Os04t0154700-00;Name=Os04t0154700-00;Locus_id=Os04g0154700;Note=Protein of unknown function DUF594 domain containing protein.;Transcript_evidence=AK376729 (DDBJ);ORF_evidence=A3AQR2 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);TENOR=Os04t0154700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	3724238	3724239	.	+	.	Parent=Os04t0154700-00
Chr04	irgsp1_rep	CDS	3724240	3724989	.	+	0	Parent=Os04t0154700-00
Chr04	irgsp1_rep	CDS	3737791	3739080	.	+	0	Parent=Os04t0154700-00
Chr04	irgsp1_rep	mRNA	3766206	3768464	.	+	.	ID=Os04t0154800-01;Name=Os04t0154800-01;Locus_id=Os04g0154800;Note=Protein of unknown function DUF594 family protein.;Transcript_evidence=AK111451 (DDBJ%2C Best hit);ORF_evidence=Q7XQL1 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);NIAS_FLcDNA=002-183-B11;Expression=AK111451;TENOR=Os04t0154800-01;KEGG=Os04t0154800-01
Chr04	irgsp1_rep	five_prime_UTR	3766206	3766290	.	+	.	Parent=Os04t0154800-01
Chr04	irgsp1_rep	CDS	3766291	3768435	.	+	0	Parent=Os04t0154800-01
Chr04	irgsp1_rep	three_prime_UTR	3768436	3768464	.	+	.	Parent=Os04t0154800-01
Chr04	irgsp1_rep	mRNA	3783358	3784338	.	+	.	ID=Os04t0155000-00;Name=Os04t0155000-00;Locus_id=Os04g0155000;Note=Similar to OSIGBa0096I22.5 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01MX3 (UniProt);TENOR=Os04t0155000-00;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	3783358	3784338	.	+	0	Parent=Os04t0155000-00
Chr04	irgsp1_rep	mRNA	3790059	3794532	.	+	.	ID=Os04t0155200-00;Name=Os04t0155200-00;Locus_id=Os04g0155200;Note=Similar to OSIGBa0093M15.1 protein.;Transcript_evidence=EU952126 (DDBJ);ORF_evidence=Q01MK4 (UniProt);TENOR=Os04t0155200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	3790059	3790104	.	+	.	Parent=Os04t0155200-00
Chr04	irgsp1_rep	CDS	3790105	3790135	.	+	0	Parent=Os04t0155200-00
Chr04	irgsp1_rep	CDS	3792503	3793158	.	+	2	Parent=Os04t0155200-00
Chr04	irgsp1_rep	three_prime_UTR	3793159	3794532	.	+	.	Parent=Os04t0155200-00
Chr04	irgsp1_rep	mRNA	3823612	3826250	.	+	.	ID=Os04t0155500-00;Name=Os04t0155500-00;Locus_id=Os04g0155500;CGSNL Gene Symbol=RLCK131;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 131;Oryzabase Gene Symbol Synonym(s)=OsRLCK131;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 131;Note=Similar to H0525E10.2 protein.;Transcript_evidence=tplb0059a02 (Wheat FLcDNA);ORF_evidence=Q01K06 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Serine-threonine/tyrosine-protein kinase (IPR001245),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18837;TENOR=Os04t0155500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	3823612	3825768	.	+	0	Parent=Os04t0155500-00
Chr04	irgsp1_rep	three_prime_UTR	3825769	3826250	.	+	.	Parent=Os04t0155500-00
Chr04	irgsp1_rep	mRNA	3847593	3849289	.	-	.	ID=Os04t0155750-00;Name=Os04t0155750-00;Locus_id=Os04g0155750;Note=Hypothetical protein.;Transcript_evidence=BT041543 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0155750-00
Chr04	irgsp1_rep	five_prime_UTR	3848211	3849289	.	-	.	Parent=Os04t0155750-00
Chr04	irgsp1_rep	CDS	3847593	3848210	.	-	0	Parent=Os04t0155750-00
Chr04	irgsp1_rep	mRNA	3847603	3849653	.	+	.	ID=Os04t0156000-00;Name=Os04t0156000-00;Locus_id=Os04g0156000;Note=Similar to OSIGBa0147M20.4 protein.;Transcript_evidence=tplb0010j16 (Wheat FLcDNA);ORF_evidence=Q01MS3 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);TENOR=Os04t0156000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	3847603	3847604	.	+	.	Parent=Os04t0156000-00
Chr04	irgsp1_rep	CDS	3847605	3849653	.	+	0	Parent=Os04t0156000-00
Chr04	irgsp1_rep	mRNA	3867343	3869354	.	+	.	ID=Os04t0156200-00;Name=Os04t0156200-00;Locus_id=Os04g0156200;Note=Hypothetical conserved gene.;Transcript_evidence=EU952126 (DDBJ);ORF_evidence=Q01MK4 (UniProt);TENOR=Os04t0156200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	3867343	3869271	.	+	0	Parent=Os04t0156200-00
Chr04	irgsp1_rep	three_prime_UTR	3869272	3869354	.	+	.	Parent=Os04t0156200-00
Chr04	irgsp1_rep	mRNA	4012193	4012480	.	-	.	ID=Os04t0157300-00;Name=Os04t0157300-00;Locus_id=Os04g0157300;Note=Hypothetical protein.;Transcript_evidence=tplb0011f16 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0157300-00
Chr04	irgsp1_rep	CDS	4012193	4012480	.	-	0	Parent=Os04t0157300-00
Chr04	irgsp1_rep	mRNA	4039943	4042102	.	+	.	ID=Os04t0158400-00;Name=Os04t0158400-00;Locus_id=Os04g0158400;Note=Conserved hypothetical protein.;Transcript_evidence=EU952126 (DDBJ);ORF_evidence=Q7XKX9 (UniProt);TENOR=Os04t0158400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	4039943	4042102	.	+	0	Parent=Os04t0158400-00
Chr04	irgsp1_rep	mRNA	4039987	4042311	.	-	.	ID=Os04t0158750-00;Name=Os04t0158750-00;Locus_id=Os04g0158750;Note=Hypothetical protein.;Transcript_evidence=tplb0042g13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0158750-00
Chr04	irgsp1_rep	five_prime_UTR	4041971	4042311	.	-	.	Parent=Os04t0158750-00
Chr04	irgsp1_rep	five_prime_UTR	4041832	4041910	.	-	.	Parent=Os04t0158750-00
Chr04	irgsp1_rep	CDS	4041505	4041831	.	-	0	Parent=Os04t0158750-00
Chr04	irgsp1_rep	three_prime_UTR	4041487	4041504	.	-	.	Parent=Os04t0158750-00
Chr04	irgsp1_rep	three_prime_UTR	4039987	4040176	.	-	.	Parent=Os04t0158750-00
Chr04	irgsp1_rep	mRNA	4169608	4170788	.	-	.	ID=Os04t0160600-00;Name=Os04t0160600-00;Locus_id=Os04g0160600;Oryzabase Gene Symbol Synonym(s)=SIP29;Oryzabase Gene Name Synonym(s)=SKIP interacting protein 29%2C SKIPa-interacting protein 29%2C SKIPa-interacting protein 29;Note=Similar to OSIGBa0096I22.5 protein.;Transcript_evidence=EU368719 (DDBJ%2C Best hit);ORF_evidence=Q01MX3 (UniProt);Oryzabase=9961;TENOR=Os04t0160600-00;KEGG=Os04t0160600-00
Chr04	irgsp1_rep	five_prime_UTR	4170787	4170788	.	-	.	Parent=Os04t0160600-00
Chr04	irgsp1_rep	CDS	4169608	4170786	.	-	0	Parent=Os04t0160600-00
Chr04	irgsp1_rep	mRNA	4169850	4171354	.	+	.	ID=Os04t0160801-01;Name=Os04t0160801-01;Locus_id=Os04g0160801;Note=Conserved hypothetical protein.;Transcript_evidence=AK241572 (DDBJ%2C Best hit);ORF_evidence=NP_001173755.1 (RefSeq);NIAS_FLcDNA=J065180A06;TENOR=Os04t0160801-01;KEGG=Os04t0160801-01
Chr04	irgsp1_rep	five_prime_UTR	4169850	4170205	.	+	.	Parent=Os04t0160801-01
Chr04	irgsp1_rep	CDS	4170206	4170514	.	+	0	Parent=Os04t0160801-01
Chr04	irgsp1_rep	three_prime_UTR	4170515	4171354	.	+	.	Parent=Os04t0160801-01
Chr04	irgsp1_rep	mRNA	4216591	4218547	.	+	.	ID=Os04t0161100-00;Name=Os04t0161100-00;Locus_id=Os04g0161100;Note=Similar to OSIGBa0102O13.5 protein.;Transcript_evidence=EU952126 (DDBJ);ORF_evidence=Q01MV1 (UniProt);TENOR=Os04t0161100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	4216591	4216640	.	+	.	Parent=Os04t0161100-00
Chr04	irgsp1_rep	CDS	4216641	4218266	.	+	0	Parent=Os04t0161100-00
Chr04	irgsp1_rep	three_prime_UTR	4218267	4218547	.	+	.	Parent=Os04t0161100-00
Chr04	irgsp1_rep	mRNA	4225748	4226837	.	+	.	ID=Os04t0161400-00;Name=Os04t0161400-00;Locus_id=Os04g0161400;Note=Similar to OSIGBa0102O13.6 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01MV0 (UniProt);TENOR=Os04t0161400-00;KEGG=Os04t0161400-00
Chr04	irgsp1_rep	CDS	4225748	4225788	.	+	0	Parent=Os04t0161400-00
Chr04	irgsp1_rep	CDS	4225907	4226837	.	+	1	Parent=Os04t0161400-00
Chr04	irgsp1_rep	mRNA	4260858	4269280	.	-	.	ID=Os04t0161736-00;Name=Os04t0161736-00;Locus_id=Os04g0161736;Note=Non-protein coding transcript.;Transcript_evidence=tplb0028c09 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os04t0161736-00
Chr04	irgsp1_rep	exon	4267769	4269280	.	-	.	Parent=Os04t0161736-00
Chr04	irgsp1_rep	exon	4260858	4261687	.	-	.	Parent=Os04t0161736-00
Chr04	irgsp1_rep	mRNA	4261165	4269287	.	+	.	ID=Os04t0161850-00;Name=Os04t0161850-00;Locus_id=Os04g0161850;Note=S-locus glycoprotein domain containing protein.;Transcript_evidence=AK358766 (DDBJ);ORF_evidence=Q7X6C7 (UniProt);GO=Biological Process: recognition of pollen (GO:0048544),Molecular Function: sugar binding (GO:0005529);InterPro=S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),PAN-2 domain (IPR013227);TENOR=Os04t0161850-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	4261165	4261266	.	+	.	Parent=Os04t0161850-00
Chr04	irgsp1_rep	CDS	4261267	4261662	.	+	0	Parent=Os04t0161850-00
Chr04	irgsp1_rep	CDS	4267744	4268412	.	+	0	Parent=Os04t0161850-00
Chr04	irgsp1_rep	three_prime_UTR	4268413	4269287	.	+	.	Parent=Os04t0161850-00
Chr04	irgsp1_rep	mRNA	4274885	4290695	.	+	.	ID=Os04t0162100-01;Name=Os04t0162100-01;Locus_id=Os04g0162100;RAP-DB Gene Symbol Synonym(s)=OsEMF2a%2C OsEMF2;RAP-DB Gene Name Synonym(s)=EMBRYONGIC FLOWER 2a%2C EMBRYONGIC FLOWER 2;CGSNL Gene Symbol=EMF2A;CGSNL Gene Name=EMBRYONIC FLOWER 2A;Oryzabase Gene Symbol Synonym(s)=OsEMF2a%2C OsEMF2%2C EMF2;Oryzabase Gene Name Synonym(s)=EMBRYONIC FLOWER 2;Note=Polycomb group protein%2C Supressor of Zeste(12) homolog%2C C2H2-type zinc finger motif containing protein;Transcript_evidence=AK120470,AY321106;ORF_evidence=Q0JF48,Q6VY02;InterPro=Polycomb protein%2C VEFS-Box (IPR019135);NIAS_FLcDNA=J013109K19;Manual Curation=October 19%2C 2017;Literature_PMID=19825651,16753820;Oryzabase=8837;TENOR=Os04t0162100-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	4274885	4275162	.	+	.	Parent=Os04t0162100-01
Chr04	irgsp1_rep	five_prime_UTR	4277692	4277951	.	+	.	Parent=Os04t0162100-01
Chr04	irgsp1_rep	five_prime_UTR	4278152	4278176	.	+	.	Parent=Os04t0162100-01
Chr04	irgsp1_rep	CDS	4278177	4278211	.	+	0	Parent=Os04t0162100-01
Chr04	irgsp1_rep	CDS	4279335	4279503	.	+	1	Parent=Os04t0162100-01
Chr04	irgsp1_rep	CDS	4279577	4279632	.	+	0	Parent=Os04t0162100-01
Chr04	irgsp1_rep	CDS	4280886	4281000	.	+	1	Parent=Os04t0162100-01
Chr04	irgsp1_rep	CDS	4281087	4281330	.	+	0	Parent=Os04t0162100-01
Chr04	irgsp1_rep	CDS	4282102	4282238	.	+	2	Parent=Os04t0162100-01
Chr04	irgsp1_rep	CDS	4282919	4282978	.	+	0	Parent=Os04t0162100-01
Chr04	irgsp1_rep	CDS	4283249	4283373	.	+	0	Parent=Os04t0162100-01
Chr04	irgsp1_rep	CDS	4284197	4284249	.	+	1	Parent=Os04t0162100-01
Chr04	irgsp1_rep	CDS	4284426	4284478	.	+	2	Parent=Os04t0162100-01
Chr04	irgsp1_rep	CDS	4284737	4284790	.	+	0	Parent=Os04t0162100-01
Chr04	irgsp1_rep	CDS	4284879	4284938	.	+	0	Parent=Os04t0162100-01
Chr04	irgsp1_rep	CDS	4285411	4285457	.	+	0	Parent=Os04t0162100-01
Chr04	irgsp1_rep	CDS	4285530	4285654	.	+	1	Parent=Os04t0162100-01
Chr04	irgsp1_rep	CDS	4286485	4286599	.	+	2	Parent=Os04t0162100-01
Chr04	irgsp1_rep	CDS	4286691	4286739	.	+	1	Parent=Os04t0162100-01
Chr04	irgsp1_rep	CDS	4289039	4289122	.	+	0	Parent=Os04t0162100-01
Chr04	irgsp1_rep	CDS	4289276	4289355	.	+	0	Parent=Os04t0162100-01
Chr04	irgsp1_rep	CDS	4289918	4290007	.	+	1	Parent=Os04t0162100-01
Chr04	irgsp1_rep	CDS	4290165	4290288	.	+	1	Parent=Os04t0162100-01
Chr04	irgsp1_rep	three_prime_UTR	4290289	4290695	.	+	.	Parent=Os04t0162100-01
Chr04	irgsp1_rep	mRNA	4274956	4285258	.	+	.	ID=Os04t0162100-02;Name=Os04t0162100-02;Locus_id=Os04g0162100;CGSNL Gene Symbol=EMF2A;CGSNL Gene Name=EMBRYONIC FLOWER 2A;Oryzabase Gene Symbol Synonym(s)=OsEMF2a%2C OsEMF2%2C EMF2;Oryzabase Gene Name Synonym(s)=EMBRYONIC FLOWER 2;Note=Similar to EMF protein.;Transcript_evidence=AK069556 (DDBJ%2C Best hit);ORF_evidence=Q6VY02 (UniProt);NIAS_FLcDNA=J023022G20;Oryzabase=8837;Expression=AK069556;TENOR=Os04t0162100-02;KEGG=Os04t0162100-02
Chr04	irgsp1_rep	five_prime_UTR	4274956	4274956	.	+	.	Parent=Os04t0162100-02
Chr04	irgsp1_rep	CDS	4274957	4275162	.	+	0	Parent=Os04t0162100-02
Chr04	irgsp1_rep	CDS	4279335	4279503	.	+	1	Parent=Os04t0162100-02
Chr04	irgsp1_rep	CDS	4279577	4279632	.	+	0	Parent=Os04t0162100-02
Chr04	irgsp1_rep	CDS	4280886	4281000	.	+	1	Parent=Os04t0162100-02
Chr04	irgsp1_rep	CDS	4281087	4281330	.	+	0	Parent=Os04t0162100-02
Chr04	irgsp1_rep	CDS	4282102	4282238	.	+	2	Parent=Os04t0162100-02
Chr04	irgsp1_rep	CDS	4282919	4282978	.	+	0	Parent=Os04t0162100-02
Chr04	irgsp1_rep	CDS	4283249	4283373	.	+	0	Parent=Os04t0162100-02
Chr04	irgsp1_rep	CDS	4284197	4284249	.	+	1	Parent=Os04t0162100-02
Chr04	irgsp1_rep	CDS	4284426	4284478	.	+	2	Parent=Os04t0162100-02
Chr04	irgsp1_rep	CDS	4284737	4284790	.	+	0	Parent=Os04t0162100-02
Chr04	irgsp1_rep	CDS	4284879	4284947	.	+	0	Parent=Os04t0162100-02
Chr04	irgsp1_rep	three_prime_UTR	4284948	4285258	.	+	.	Parent=Os04t0162100-02
Chr04	irgsp1_rep	mRNA	4274939	4290313	.	-	.	ID=Os04t0162300-00;Name=Os04t0162300-00;Locus_id=Os04g0162300;Note=Non-protein coding transcript.;Transcript_evidence=tplb0054d13 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os04t0162300-00
Chr04	irgsp1_rep	exon	4290163	4290313	.	-	.	Parent=Os04t0162300-00
Chr04	irgsp1_rep	exon	4289919	4289997	.	-	.	Parent=Os04t0162300-00
Chr04	irgsp1_rep	exon	4289258	4289356	.	-	.	Parent=Os04t0162300-00
Chr04	irgsp1_rep	exon	4286659	4286798	.	-	.	Parent=Os04t0162300-00
Chr04	irgsp1_rep	exon	4285486	4285695	.	-	.	Parent=Os04t0162300-00
Chr04	irgsp1_rep	exon	4284891	4285045	.	-	.	Parent=Os04t0162300-00
Chr04	irgsp1_rep	exon	4284707	4284802	.	-	.	Parent=Os04t0162300-00
Chr04	irgsp1_rep	exon	4284174	4284277	.	-	.	Parent=Os04t0162300-00
Chr04	irgsp1_rep	exon	4283247	4283352	.	-	.	Parent=Os04t0162300-00
Chr04	irgsp1_rep	exon	4282909	4282973	.	-	.	Parent=Os04t0162300-00
Chr04	irgsp1_rep	exon	4282079	4282231	.	-	.	Parent=Os04t0162300-00
Chr04	irgsp1_rep	exon	4281056	4281292	.	-	.	Parent=Os04t0162300-00
Chr04	irgsp1_rep	exon	4280856	4280977	.	-	.	Parent=Os04t0162300-00
Chr04	irgsp1_rep	exon	4279375	4279531	.	-	.	Parent=Os04t0162300-00
Chr04	irgsp1_rep	exon	4278107	4278244	.	-	.	Parent=Os04t0162300-00
Chr04	irgsp1_rep	exon	4277752	4277942	.	-	.	Parent=Os04t0162300-00
Chr04	irgsp1_rep	exon	4274939	4275159	.	-	.	Parent=Os04t0162300-00
Chr04	irgsp1_rep	mRNA	4296220	4297568	.	+	.	ID=Os04t0162500-01;Name=Os04t0162500-01;Locus_id=Os04g0162500;CGSNL Gene Symbol=DLN107;CGSNL Gene Name=DLN REPRESSOR 107;Oryzabase Gene Symbol Synonym(s)=OsDLN107%2C WACH1%2C OsWACH1;Oryzabase Gene Name Synonym(s)=DLN repressor 107%2C DLN motif protein 107%2C Wall Associated C2H2 protein 1;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK108645 (DDBJ%2C Best hit);ORF_evidence=Q01MU4 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=002-148-B03;Oryzabase=23190;Expression=AK108645;TENOR=Os04t0162500-01;KEGG=Os04t0162500-01
Chr04	irgsp1_rep	five_prime_UTR	4296220	4296220	.	+	.	Parent=Os04t0162500-01
Chr04	irgsp1_rep	CDS	4296221	4296316	.	+	0	Parent=Os04t0162500-01
Chr04	irgsp1_rep	CDS	4296586	4297359	.	+	0	Parent=Os04t0162500-01
Chr04	irgsp1_rep	three_prime_UTR	4297360	4297568	.	+	.	Parent=Os04t0162500-01
Chr04	irgsp1_rep	mRNA	4309095	4310448	.	-	.	ID=Os04t0162600-01;Name=Os04t0162600-01;Locus_id=Os04g0162600;Note=Protein of unknown function DUF295 family protein.;Transcript_evidence=AK105473 (DDBJ%2C Best hit);ORF_evidence=Q01MU3 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174);NIAS_FLcDNA=001-127-A03;Expression=AK105473;TENOR=Os04t0162600-01;KEGG=Os04t0162600-01
Chr04	irgsp1_rep	five_prime_UTR	4310380	4310448	.	-	.	Parent=Os04t0162600-01
Chr04	irgsp1_rep	CDS	4309168	4310379	.	-	0	Parent=Os04t0162600-01
Chr04	irgsp1_rep	three_prime_UTR	4309095	4309167	.	-	.	Parent=Os04t0162600-01
Chr04	irgsp1_rep	mRNA	4314795	4316249	.	-	.	ID=Os04t0162701-00;Name=Os04t0162701-00;Locus_id=Os04g0162701;Note=Hypothetical gene.;Transcript_evidence=CT836514 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os04t0162701-00;KEGG=Os04t0162701-00
Chr04	irgsp1_rep	five_prime_UTR	4315882	4316249	.	-	.	Parent=Os04t0162701-00
Chr04	irgsp1_rep	five_prime_UTR	4315368	4315371	.	-	.	Parent=Os04t0162701-00
Chr04	irgsp1_rep	CDS	4315149	4315367	.	-	0	Parent=Os04t0162701-00
Chr04	irgsp1_rep	three_prime_UTR	4315138	4315148	.	-	.	Parent=Os04t0162701-00
Chr04	irgsp1_rep	three_prime_UTR	4314795	4315048	.	-	.	Parent=Os04t0162701-00
Chr04	irgsp1_rep	mRNA	4319058	4321316	.	-	.	ID=Os04t0162800-00;Name=Os04t0162800-00;Locus_id=Os04g0162800;Note=Protein of unknown function DUF594 family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001173757.1 (RefSeq);InterPro=Protein of unknown function DUF594 (IPR007658);TENOR=Os04t0162800-00;KEGG=Os04t0162800-00
Chr04	irgsp1_rep	CDS	4319058	4321316	.	-	0	Parent=Os04t0162800-00
Chr04	irgsp1_rep	mRNA	4319589	4321241	.	+	.	ID=Os04t0162975-00;Name=Os04t0162975-00;Locus_id=Os04g0162975;Note=Hypothetical gene.;Transcript_evidence=BT041543 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0162975-00;KEGG=Os04t0162975-00
Chr04	irgsp1_rep	five_prime_UTR	4319589	4319889	.	+	.	Parent=Os04t0162975-00
Chr04	irgsp1_rep	CDS	4319890	4320144	.	+	0	Parent=Os04t0162975-00
Chr04	irgsp1_rep	three_prime_UTR	4320145	4321241	.	+	.	Parent=Os04t0162975-00
Chr04	irgsp1_rep	mRNA	4345431	4346416	.	+	.	ID=Os04t0163425-00;Name=Os04t0163425-00;Locus_id=Os04g0163425;Note=NAF domain domain containing protein.;Transcript_evidence=BT033955 (DDBJ);ORF_evidence=Q7XQW1 (UniProt);GO=Biological Process: signal transduction (GO:0007165);InterPro=NAF domain (IPR004041),NAF/FISL domain (IPR018451);TENOR=Os04t0163425-00
Chr04	irgsp1_rep	CDS	4345431	4346213	.	+	0	Parent=Os04t0163425-00
Chr04	irgsp1_rep	three_prime_UTR	4346214	4346416	.	+	.	Parent=Os04t0163425-00
Chr04	irgsp1_rep	mRNA	4349090	4352230	.	+	.	ID=Os04t0163700-01;Name=Os04t0163700-01;Locus_id=Os04g0163700;Note=Conserved hypothetical protein.;Transcript_evidence=AK288025 (DDBJ%2C Best hit);ORF_evidence=NP_001173758.1 (RefSeq);NIAS_FLcDNA=J075128G23;TENOR=Os04t0163700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	4349090	4349327	.	+	.	Parent=Os04t0163700-01
Chr04	irgsp1_rep	five_prime_UTR	4349412	4350199	.	+	.	Parent=Os04t0163700-01
Chr04	irgsp1_rep	five_prime_UTR	4350342	4350572	.	+	.	Parent=Os04t0163700-01
Chr04	irgsp1_rep	five_prime_UTR	4350723	4350849	.	+	.	Parent=Os04t0163700-01
Chr04	irgsp1_rep	five_prime_UTR	4350926	4351168	.	+	.	Parent=Os04t0163700-01
Chr04	irgsp1_rep	CDS	4351169	4351369	.	+	0	Parent=Os04t0163700-01
Chr04	irgsp1_rep	three_prime_UTR	4351370	4352230	.	+	.	Parent=Os04t0163700-01
Chr04	irgsp1_rep	mRNA	4353559	4355594	.	+	.	ID=Os04t0163800-01;Name=Os04t0163800-01;Locus_id=Os04g0163800;Note=Protein of unknown function DUF594 family protein.;Transcript_evidence=AK063533 (DDBJ%2C Best hit);ORF_evidence=Q7XQW0 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);NIAS_FLcDNA=001-117-B08;Expression=AK063533;TENOR=Os04t0163800-01;KEGG=Os04t0163800-01
Chr04	irgsp1_rep	five_prime_UTR	4353559	4353559	.	+	.	Parent=Os04t0163800-01
Chr04	irgsp1_rep	CDS	4353560	4355401	.	+	0	Parent=Os04t0163800-01
Chr04	irgsp1_rep	three_prime_UTR	4355402	4355594	.	+	.	Parent=Os04t0163800-01
Chr04	irgsp1_rep	mRNA	4382052	4385552	.	+	.	ID=Os04t0164300-01;Name=Os04t0164300-01;Locus_id=Os04g0164300;Note=Ribosomal protein S12/S23 domain containing protein.;Transcript_evidence=AK241744 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065202C24;TENOR=Os04t0164300-01;KEGG=Os04t0164300-01
Chr04	irgsp1_rep	CDS	4382052	4382702	.	+	0	Parent=Os04t0164300-01
Chr04	irgsp1_rep	three_prime_UTR	4382703	4382907	.	+	.	Parent=Os04t0164300-01
Chr04	irgsp1_rep	three_prime_UTR	4383006	4383069	.	+	.	Parent=Os04t0164300-01
Chr04	irgsp1_rep	three_prime_UTR	4383227	4383349	.	+	.	Parent=Os04t0164300-01
Chr04	irgsp1_rep	three_prime_UTR	4383964	4384647	.	+	.	Parent=Os04t0164300-01
Chr04	irgsp1_rep	three_prime_UTR	4385078	4385552	.	+	.	Parent=Os04t0164300-01
Chr04	irgsp1_rep	mRNA	4401281	4402094	.	-	.	ID=Os04t0164701-01;Name=Os04t0164701-01;Locus_id=Os04g0164701;Note=Protein of unknown function DUF295 family protein.;Transcript_evidence=AK242391 (DDBJ%2C Best hit);ORF_evidence=NP_001173759.1 (RefSeq);InterPro=Protein of unknown function DUF295 (IPR005174);NIAS_FLcDNA=J080060O20;TENOR=Os04t0164701-01;KEGG=Os04t0164701-01
Chr04	irgsp1_rep	CDS	4401564	4402094	.	-	0	Parent=Os04t0164701-01
Chr04	irgsp1_rep	three_prime_UTR	4401281	4401563	.	-	.	Parent=Os04t0164701-01
Chr04	irgsp1_rep	mRNA	4408357	4418889	.	+	.	ID=Os04t0164900-01;Name=Os04t0164900-01;Locus_id=Os04g0164900;RAP-DB Gene Symbol Synonym(s)=OsPUL%2C OsPUL3;RAP-DB Gene Name Synonym(s)=pullulanase%2C R-enzyme%2C starch debranching enzyme;CGSNL Gene Symbol=PUL;CGSNL Gene Name=PULLULANASE;Oryzabase Gene Symbol Synonym(s)=OsPUL%2C SDBE%2C OsPUL3%2C RE;Oryzabase Gene Name Synonym(s)=R-enzyme%2C starch debranching enzyme;Note=Pullulanase-type starch debranching enzyme (EC 3.2.1.41);Transcript_evidence=AK242137;ORF_evidence=A0A0P0W7K6;InterPro=Glycoside hydrolase superfamily (IPR017853),Glycosyl hydrolase%2C all-beta (IPR013780),Alpha-1%2C6-glucosidases%2C pullulanase-type%2C C-terminal (IPR024561);NIAS_FLcDNA=J075150A13;Manual Curation=June 24%2C 2019;Literature_PMID=22950899,9748665,8680309;Oryzabase=8905;TENOR=Os04t0164900-01;KEGG=Os04t0164900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	4408357	4408415	.	+	.	Parent=Os04t0164900-01
Chr04	irgsp1_rep	five_prime_UTR	4408816	4408906	.	+	.	Parent=Os04t0164900-01
Chr04	irgsp1_rep	five_prime_UTR	4409031	4409115	.	+	.	Parent=Os04t0164900-01
Chr04	irgsp1_rep	CDS	4409116	4409124	.	+	0	Parent=Os04t0164900-01
Chr04	irgsp1_rep	CDS	4409361	4409456	.	+	0	Parent=Os04t0164900-01
Chr04	irgsp1_rep	CDS	4410091	4410231	.	+	0	Parent=Os04t0164900-01
Chr04	irgsp1_rep	CDS	4410507	4410557	.	+	0	Parent=Os04t0164900-01
Chr04	irgsp1_rep	CDS	4411987	4412057	.	+	0	Parent=Os04t0164900-01
Chr04	irgsp1_rep	CDS	4412159	4412251	.	+	1	Parent=Os04t0164900-01
Chr04	irgsp1_rep	CDS	4412735	4412825	.	+	1	Parent=Os04t0164900-01
Chr04	irgsp1_rep	CDS	4415141	4415266	.	+	0	Parent=Os04t0164900-01
Chr04	irgsp1_rep	CDS	4415452	4415508	.	+	0	Parent=Os04t0164900-01
Chr04	irgsp1_rep	CDS	4415841	4415915	.	+	0	Parent=Os04t0164900-01
Chr04	irgsp1_rep	CDS	4416485	4416573	.	+	0	Parent=Os04t0164900-01
Chr04	irgsp1_rep	CDS	4416729	4416806	.	+	1	Parent=Os04t0164900-01
Chr04	irgsp1_rep	CDS	4417223	4417361	.	+	1	Parent=Os04t0164900-01
Chr04	irgsp1_rep	CDS	4417783	4417892	.	+	0	Parent=Os04t0164900-01
Chr04	irgsp1_rep	CDS	4418066	4418165	.	+	1	Parent=Os04t0164900-01
Chr04	irgsp1_rep	CDS	4418463	4418570	.	+	0	Parent=Os04t0164900-01
Chr04	irgsp1_rep	three_prime_UTR	4418571	4418889	.	+	.	Parent=Os04t0164900-01
Chr04	irgsp1_rep	mRNA	4419427	4421142	.	-	.	ID=Os04t0165000-01;Name=Os04t0165000-01;Locus_id=Os04g0165000;Note=Similar to thaumatin-like protein 1a.;Transcript_evidence=AK107984 (DDBJ%2C Best hit);ORF_evidence=NP_001149743.1 (RefSeq);InterPro=Thaumatin%2C pathogenesis-related (IPR001938),Thaumatin%2C conserved site (IPR017949);NIAS_FLcDNA=002-135-E09;TENOR=Os04t0165000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	4421108	4421142	.	-	.	Parent=Os04t0165000-01
Chr04	irgsp1_rep	CDS	4420963	4421107	.	-	0	Parent=Os04t0165000-01
Chr04	irgsp1_rep	CDS	4419486	4420204	.	-	2	Parent=Os04t0165000-01
Chr04	irgsp1_rep	three_prime_UTR	4419427	4419485	.	-	.	Parent=Os04t0165000-01
Chr04	irgsp1_rep	mRNA	4419496	4420209	.	+	.	ID=Os04t0165100-00;Name=Os04t0165100-00;Locus_id=Os04g0165100;Note=Hypothetical protein.;Transcript_evidence=EU967040 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0165100-00
Chr04	irgsp1_rep	five_prime_UTR	4419496	4419497	.	+	.	Parent=Os04t0165100-00
Chr04	irgsp1_rep	CDS	4419498	4420208	.	+	0	Parent=Os04t0165100-00
Chr04	irgsp1_rep	three_prime_UTR	4420209	4420209	.	+	.	Parent=Os04t0165100-00
Chr04	irgsp1_rep	mRNA	4424830	4427681	.	-	.	ID=Os04t0165200-01;Name=Os04t0165200-01;Locus_id=Os04g0165200;RAP-DB Gene Symbol Synonym(s)=ART2;RAP-DB Gene Name Synonym(s)=aluminum resistance transcription factor 2;CGSNL Gene Symbol=ART2;CGSNL Gene Name=ALUMINIUM RESISTANCE TRANSCRIPTION FACTOR 2;Oryzabase Gene Symbol Synonym(s)=OsART2;Oryzabase Gene Name Synonym(s)=Al resistance transcription factor 2;Note=Cys2His2-type zinc finger transcription factor%2C ART1 homolog%2C Al tolerance;Transcript_evidence=AK243285;ORF_evidence=Q7XXA5;GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Zinc finger C2H2 superfamily (IPR036236),Zinc finger C2H2-type (IPR013087),EF-Hand 1%2C calcium-binding site (IPR018247);NIAS_FLcDNA=J100051N01;Manual Curation=June 13%2C 2018;Literature_PMID=29888411;Oryzabase=22485;TENOR=Os04t0165200-01;KEGG=Os04t0165200-01;Subcellular location=nucleus (GO:0005634)
Chr04	irgsp1_rep	five_prime_UTR	4427586	4427681	.	-	.	Parent=Os04t0165200-01
Chr04	irgsp1_rep	CDS	4426470	4427585	.	-	0	Parent=Os04t0165200-01
Chr04	irgsp1_rep	three_prime_UTR	4424830	4426469	.	-	.	Parent=Os04t0165200-01
Chr04	irgsp1_rep	mRNA	4436866	4441624	.	+	.	ID=Os04t0165300-01;Name=Os04t0165300-01;Locus_id=Os04g0165300;Note=Conserved hypothetical protein.;Transcript_evidence=AK067285 (DDBJ%2C Best hit);ORF_evidence=B8AV03 (UniProt);NIAS_FLcDNA=J013099G21;Expression=AK067285;TENOR=Os04t0165300-01;KEGG=Os04t0165300-01
Chr04	irgsp1_rep	five_prime_UTR	4436866	4437019	.	+	.	Parent=Os04t0165300-01
Chr04	irgsp1_rep	five_prime_UTR	4437292	4437301	.	+	.	Parent=Os04t0165300-01
Chr04	irgsp1_rep	CDS	4437302	4438071	.	+	0	Parent=Os04t0165300-01
Chr04	irgsp1_rep	CDS	4441070	4441076	.	+	1	Parent=Os04t0165300-01
Chr04	irgsp1_rep	three_prime_UTR	4441077	4441624	.	+	.	Parent=Os04t0165300-01
Chr04	irgsp1_rep	mRNA	4436888	4441515	.	+	.	ID=Os04t0165300-02;Name=Os04t0165300-02;Locus_id=Os04g0165300;Note=Conserved hypothetical protein.;Transcript_evidence=AK104586 (DDBJ%2C Best hit);ORF_evidence=B8AV03 (UniProt);NIAS_FLcDNA=006-307-G01;Expression=AK104586;TENOR=Os04t0165300-02;KEGG=Os04t0165300-02
Chr04	irgsp1_rep	five_prime_UTR	4436888	4437019	.	+	.	Parent=Os04t0165300-02
Chr04	irgsp1_rep	five_prime_UTR	4437292	4437301	.	+	.	Parent=Os04t0165300-02
Chr04	irgsp1_rep	CDS	4437302	4438071	.	+	0	Parent=Os04t0165300-02
Chr04	irgsp1_rep	CDS	4441070	4441076	.	+	1	Parent=Os04t0165300-02
Chr04	irgsp1_rep	three_prime_UTR	4441077	4441515	.	+	.	Parent=Os04t0165300-02
Chr04	irgsp1_rep	mRNA	4441922	4443953	.	-	.	ID=Os04t0165400-01;Name=Os04t0165400-01;Locus_id=Os04g0165400;Note=Hrf1 family protein.;Transcript_evidence=AK100494 (DDBJ%2C Best hit);ORF_evidence=NP_001152217.1 (RefSeq);InterPro=Hrf1 (IPR005578);NIAS_FLcDNA=J023098P11;Expression=AK100494;TENOR=Os04t0165400-01;KEGG=Os04t0165400-01
Chr04	irgsp1_rep	five_prime_UTR	4443762	4443953	.	-	.	Parent=Os04t0165400-01
Chr04	irgsp1_rep	five_prime_UTR	4443256	4443257	.	-	.	Parent=Os04t0165400-01
Chr04	irgsp1_rep	CDS	4443046	4443255	.	-	0	Parent=Os04t0165400-01
Chr04	irgsp1_rep	CDS	4442846	4442944	.	-	0	Parent=Os04t0165400-01
Chr04	irgsp1_rep	CDS	4442605	4442756	.	-	0	Parent=Os04t0165400-01
Chr04	irgsp1_rep	CDS	4442142	4442523	.	-	1	Parent=Os04t0165400-01
Chr04	irgsp1_rep	three_prime_UTR	4441922	4442141	.	-	.	Parent=Os04t0165400-01
Chr04	irgsp1_rep	mRNA	4442881	4443184	.	+	.	ID=Os04t0165450-00;Name=Os04t0165450-00;Locus_id=Os04g0165450;Note=Non-protein coding transcript.;Transcript_evidence=BT084072 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0165450-00
Chr04	irgsp1_rep	exon	4442881	4442932	.	+	.	Parent=Os04t0165450-00
Chr04	irgsp1_rep	exon	4443034	4443184	.	+	.	Parent=Os04t0165450-00
Chr04	irgsp1_rep	mRNA	4446439	4449913	.	-	.	ID=Os04t0165500-01;Name=Os04t0165500-01;Locus_id=Os04g0165500;Note=Conserved hypothetical protein.;Transcript_evidence=AK105123 (DDBJ%2C Best hit);ORF_evidence=A2XQ97 (UniProt);NIAS_FLcDNA=001-101-C10;Expression=AK105123;TENOR=Os04t0165500-01;KEGG=Os04t0165500-01
Chr04	irgsp1_rep	five_prime_UTR	4449782	4449913	.	-	.	Parent=Os04t0165500-01
Chr04	irgsp1_rep	five_prime_UTR	4446961	4446977	.	-	.	Parent=Os04t0165500-01
Chr04	irgsp1_rep	CDS	4446878	4446960	.	-	0	Parent=Os04t0165500-01
Chr04	irgsp1_rep	CDS	4446649	4446778	.	-	1	Parent=Os04t0165500-01
Chr04	irgsp1_rep	three_prime_UTR	4446439	4446648	.	-	.	Parent=Os04t0165500-01
Chr04	irgsp1_rep	mRNA	4452696	4455350	.	+	.	ID=Os04t0165600-01;Name=Os04t0165600-01;Locus_id=Os04g0165600;Oryzabase Gene Symbol Synonym(s)=OsSigP3%2C SIGP3;Oryzabase Gene Name Synonym(s)=Type I Signal Peptidase 3%2C TYPE I SIGNAL PEPTIDASE 3;Note=Peptidase S26A%2C signal peptidase I family protein.;Transcript_evidence=AK062476 (DDBJ%2C Best hit);ORF_evidence=B6UIG2 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: serine-type peptidase activity (GO:0008236);InterPro=Peptidase S26A%2C signal peptidase I (IPR000223),Peptidase S24/S26A/S26B/S26C%2C beta-ribbon domain (IPR011056),Peptidase S24/S26A/S26B/S26C (IPR015927),Peptidase S26A%2C signal peptidase I%2C lysine active site (IPR019757),Peptidase S24/S26A/S26B (IPR019759);NIAS_FLcDNA=001-103-F08;Oryzabase=20044;Expression=AK062476;TENOR=Os04t0165600-01;KEGG=Os04t0165600-01 (EC:3.4.99.-)
Chr04	irgsp1_rep	five_prime_UTR	4452696	4452842	.	+	.	Parent=Os04t0165600-01
Chr04	irgsp1_rep	CDS	4452843	4452987	.	+	0	Parent=Os04t0165600-01
Chr04	irgsp1_rep	CDS	4453073	4453148	.	+	2	Parent=Os04t0165600-01
Chr04	irgsp1_rep	CDS	4453265	4453430	.	+	1	Parent=Os04t0165600-01
Chr04	irgsp1_rep	CDS	4454873	4454980	.	+	0	Parent=Os04t0165600-01
Chr04	irgsp1_rep	three_prime_UTR	4454981	4455350	.	+	.	Parent=Os04t0165600-01
Chr04	irgsp1_rep	mRNA	4457411	4461765	.	-	.	ID=Os04t0165700-01;Name=Os04t0165700-01;Locus_id=Os04g0165700;Oryzabase Gene Symbol Synonym(s)=OsCAS%2C CAS;Oryzabase Gene Name Synonym(s)=beta-cyanoalanine synthase;Note=Cysteine synthase (EC 2.5.1.47).;Transcript_evidence=AK102512 (DDBJ%2C Best hit);ORF_evidence=Q5UJF9 (UniProt);GO=Biological Process: cysteine biosynthetic process from serine (GO:0006535),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: cysteine synthase activity (GO:0004124),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (IPR001216),Pyridoxal phosphate-dependent enzyme%2C beta subunit (IPR001926),Cysteine synthase K/M (IPR005856),Cysteine synthase A (IPR005859),Twin-arginine translocation pathway%2C signal sequence (IPR006311);NIAS_FLcDNA=J033095I16;Oryzabase=14274;Expression=AK102512;TENOR=Os04t0165700-01;KEGG=Os04t0165700-01 (EC:2.5.1.47%2C EC:4.2.1.22)
Chr04	irgsp1_rep	five_prime_UTR	4461711	4461765	.	-	.	Parent=Os04t0165700-01
Chr04	irgsp1_rep	CDS	4461519	4461710	.	-	0	Parent=Os04t0165700-01
Chr04	irgsp1_rep	CDS	4461176	4461285	.	-	0	Parent=Os04t0165700-01
Chr04	irgsp1_rep	CDS	4459946	4460003	.	-	1	Parent=Os04t0165700-01
Chr04	irgsp1_rep	CDS	4459364	4459627	.	-	0	Parent=Os04t0165700-01
Chr04	irgsp1_rep	CDS	4458960	4459097	.	-	0	Parent=Os04t0165700-01
Chr04	irgsp1_rep	CDS	4458838	4458889	.	-	0	Parent=Os04t0165700-01
Chr04	irgsp1_rep	CDS	4458630	4458709	.	-	2	Parent=Os04t0165700-01
Chr04	irgsp1_rep	CDS	4458147	4458206	.	-	0	Parent=Os04t0165700-01
Chr04	irgsp1_rep	CDS	4457847	4457927	.	-	0	Parent=Os04t0165700-01
Chr04	irgsp1_rep	CDS	4457657	4457755	.	-	0	Parent=Os04t0165700-01
Chr04	irgsp1_rep	three_prime_UTR	4457411	4457656	.	-	.	Parent=Os04t0165700-01
Chr04	irgsp1_rep	mRNA	4459041	4461260	.	+	.	ID=Os04t0165801-00;Name=Os04t0165801-00;Locus_id=Os04g0165801;Note=Hypothetical protein.;Transcript_evidence=AJ622893 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0165801-00
Chr04	irgsp1_rep	five_prime_UTR	4459041	4459091	.	+	.	Parent=Os04t0165801-00
Chr04	irgsp1_rep	five_prime_UTR	4459357	4459397	.	+	.	Parent=Os04t0165801-00
Chr04	irgsp1_rep	CDS	4459398	4459645	.	+	0	Parent=Os04t0165801-00
Chr04	irgsp1_rep	CDS	4461140	4461167	.	+	1	Parent=Os04t0165801-00
Chr04	irgsp1_rep	three_prime_UTR	4461168	4461260	.	+	.	Parent=Os04t0165801-00
Chr04	irgsp1_rep	mRNA	4469893	4472106	.	-	.	ID=Os04t0165900-00;Name=Os04t0165900-00;Locus_id=Os04g0165900;Note=Conserved hypothetical protein.;Transcript_evidence=AK107133 (DDBJ%2C Secondary hit);ORF_evidence=NP_001173762.1 (RefSeq);TENOR=Os04t0165900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	4472106	4472106	.	-	.	Parent=Os04t0165900-00
Chr04	irgsp1_rep	CDS	4470808	4472105	.	-	0	Parent=Os04t0165900-00
Chr04	irgsp1_rep	CDS	4470642	4470786	.	-	1	Parent=Os04t0165900-00
Chr04	irgsp1_rep	three_prime_UTR	4470599	4470641	.	-	.	Parent=Os04t0165900-00
Chr04	irgsp1_rep	three_prime_UTR	4469893	4470274	.	-	.	Parent=Os04t0165900-00
Chr04	irgsp1_rep	mRNA	4485003	4490101	.	-	.	ID=Os04t0166000-01;Name=Os04t0166000-01;Locus_id=Os04g0166000;Note=Conserved hypothetical protein.;Transcript_evidence=AK101349 (DDBJ%2C Best hit);ORF_evidence=Q7XS56 (UniProt);NIAS_FLcDNA=J033034N04;Expression=AK101349;TENOR=Os04t0166000-01;KEGG=Os04t0166000-01
Chr04	irgsp1_rep	five_prime_UTR	4490006	4490101	.	-	.	Parent=Os04t0166000-01
Chr04	irgsp1_rep	five_prime_UTR	4489785	4489882	.	-	.	Parent=Os04t0166000-01
Chr04	irgsp1_rep	CDS	4489773	4489784	.	-	0	Parent=Os04t0166000-01
Chr04	irgsp1_rep	CDS	4485740	4488772	.	-	0	Parent=Os04t0166000-01
Chr04	irgsp1_rep	three_prime_UTR	4485697	4485739	.	-	.	Parent=Os04t0166000-01
Chr04	irgsp1_rep	three_prime_UTR	4485003	4485373	.	-	.	Parent=Os04t0166000-01
Chr04	irgsp1_rep	mRNA	4485000	4487183	.	-	.	ID=Os04t0166000-02;Name=Os04t0166000-02;Locus_id=Os04g0166000;Note=Hypothetical conserved gene.;Transcript_evidence=AK107133 (DDBJ%2C Best hit);ORF_evidence=Q7XS56 (UniProt);NIAS_FLcDNA=002-124-C07;Expression=AK107133;TENOR=Os04t0166000-02;KEGG=Os04t0166000-02
Chr04	irgsp1_rep	five_prime_UTR	4487183	4487183	.	-	.	Parent=Os04t0166000-02
Chr04	irgsp1_rep	CDS	4485740	4487182	.	-	0	Parent=Os04t0166000-02
Chr04	irgsp1_rep	three_prime_UTR	4485697	4485739	.	-	.	Parent=Os04t0166000-02
Chr04	irgsp1_rep	three_prime_UTR	4485000	4485373	.	-	.	Parent=Os04t0166000-02
Chr04	irgsp1_rep	mRNA	4506106	4508529	.	+	.	ID=Os04t0166300-01;Name=Os04t0166300-01;Locus_id=Os04g0166300;Note=Hypothetical gene.;Transcript_evidence=AK064066 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-125-G04;Expression=AK064066;TENOR=Os04t0166300-01;KEGG=Os04t0166300-01
Chr04	irgsp1_rep	five_prime_UTR	4506106	4506106	.	+	.	Parent=Os04t0166300-01
Chr04	irgsp1_rep	CDS	4506107	4506455	.	+	0	Parent=Os04t0166300-01
Chr04	irgsp1_rep	CDS	4508260	4508279	.	+	2	Parent=Os04t0166300-01
Chr04	irgsp1_rep	three_prime_UTR	4508280	4508529	.	+	.	Parent=Os04t0166300-01
Chr04	irgsp1_rep	mRNA	4509613	4513848	.	-	.	ID=Os04t0166400-01;Name=Os04t0166400-01;Locus_id=Os04g0166400;Note=Similar to OSIGBa0136O08-OSIGBa0153H12.2 protein.;Transcript_evidence=AK064159 (DDBJ%2C Best hit),AK064765 (DDBJ%2C Best hit);ORF_evidence=Q01HC2 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: DNA binding (GO:0003677);InterPro=ELM2 domain (IPR000949),ARID/BRIGHT DNA-binding domain (IPR001606);NIAS_FLcDNA=002-103-F07,002-120-H12;TENOR=Os04t0166400-01
Chr04	irgsp1_rep	five_prime_UTR	4513773	4513848	.	-	.	Parent=Os04t0166400-01
Chr04	irgsp1_rep	CDS	4513059	4513772	.	-	0	Parent=Os04t0166400-01
Chr04	irgsp1_rep	CDS	4509613	4510468	.	-	0	Parent=Os04t0166400-01
Chr04	irgsp1_rep	mRNA	4513296	4513875	.	+	.	ID=Os04t0166450-00;Name=Os04t0166450-00;Locus_id=Os04g0166450;Note=Non-protein coding transcript.;Transcript_evidence=EU942336 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0166450-00
Chr04	irgsp1_rep	exon	4513296	4513875	.	+	.	Parent=Os04t0166450-00
Chr04	irgsp1_rep	mRNA	4520914	4521524	.	-	.	ID=Os04t0166500-01;Name=Os04t0166500-01;Locus_id=Os04g0166500;Note=Hypothetical conserved gene.;Transcript_evidence=AK062749 (DDBJ%2C Best hit);ORF_evidence=B8AV06 (UniProt);NIAS_FLcDNA=001-106-F12;Expression=AK062749;TENOR=Os04t0166500-01;KEGG=Os04t0166500-01
Chr04	irgsp1_rep	five_prime_UTR	4521222	4521524	.	-	.	Parent=Os04t0166500-01
Chr04	irgsp1_rep	CDS	4521003	4521221	.	-	0	Parent=Os04t0166500-01
Chr04	irgsp1_rep	three_prime_UTR	4520914	4521002	.	-	.	Parent=Os04t0166500-01
Chr04	irgsp1_rep	mRNA	4543619	4547486	.	+	.	ID=Os04t0166600-01;Name=Os04t0166600-01;Locus_id=Os04g0166600;RAP-DB Gene Symbol Synonym(s)=OsSFL1;RAP-DB Gene Name Synonym(s)=SAP30 Functional Like 1;CGSNL Gene Symbol=SFL1;CGSNL Gene Name=SAP30 FUNCTIONAL LIKE 1;Oryzabase Gene Symbol Synonym(s)=OsSFL1;Oryzabase Gene Name Synonym(s)=SAP30 Functional Like 1;Note=Homolog of yeast SAP30 (sin3-associated polypeptide 30)%2C Regulation of flowering time%2C Mediation of periodic histone deacetylation;Transcript_evidence=AK102406;ORF_evidence=Q0JF35;GO=Molecular Function: protein binding (GO:0005515);InterPro=SAP30%2C C-terminal domain superfamily (IPR038291),Histone deacetylase complex subunit SAP30%2C Sin3 binding domain (IPR025718);NIAS_FLcDNA=J033092L14;Manual Curation=August 27%2C 2019;Literature_PMID=31446676;Oryzabase=23298;Expression=AK102406;TENOR=Os04t0166600-01;KEGG=Os04t0166600-01;Subcellular location=nucleus (GO:0005634)
Chr04	irgsp1_rep	five_prime_UTR	4543619	4543828	.	+	.	Parent=Os04t0166600-01
Chr04	irgsp1_rep	five_prime_UTR	4545615	4545639	.	+	.	Parent=Os04t0166600-01
Chr04	irgsp1_rep	CDS	4545640	4545834	.	+	0	Parent=Os04t0166600-01
Chr04	irgsp1_rep	CDS	4546128	4546275	.	+	0	Parent=Os04t0166600-01
Chr04	irgsp1_rep	CDS	4546370	4546485	.	+	2	Parent=Os04t0166600-01
Chr04	irgsp1_rep	CDS	4546833	4546895	.	+	0	Parent=Os04t0166600-01
Chr04	irgsp1_rep	CDS	4547000	4547068	.	+	0	Parent=Os04t0166600-01
Chr04	irgsp1_rep	CDS	4547194	4547268	.	+	0	Parent=Os04t0166600-01
Chr04	irgsp1_rep	three_prime_UTR	4547269	4547486	.	+	.	Parent=Os04t0166600-01
Chr04	irgsp1_rep	mRNA	4545258	4545771	.	-	.	ID=Os04t0167300-01;Name=Os04t0167300-01;Locus_id=Os04g0167300;Note=Conserved hypothetical protein.;Transcript_evidence=AK240795 (DDBJ%2C Best hit);ORF_evidence=NP_001173763.1 (RefSeq);NIAS_FLcDNA=J065001O13;TENOR=Os04t0167300-01;KEGG=Os04t0167300-01
Chr04	irgsp1_rep	five_prime_UTR	4545744	4545771	.	-	.	Parent=Os04t0167300-01
Chr04	irgsp1_rep	CDS	4545294	4545743	.	-	0	Parent=Os04t0167300-01
Chr04	irgsp1_rep	three_prime_UTR	4545258	4545293	.	-	.	Parent=Os04t0167300-01
Chr04	irgsp1_rep	mRNA	4599353	4604670	.	-	.	ID=Os04t0167701-01;Name=Os04t0167701-01;Locus_id=Os04g0167701;Note=Non-protein coding transcript.;Transcript_evidence=AK288791 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090070A20;TENOR=Os04t0167701-01
Chr04	irgsp1_rep	exon	4603316	4604670	.	-	.	Parent=Os04t0167701-01
Chr04	irgsp1_rep	exon	4599353	4601165	.	-	.	Parent=Os04t0167701-01
Chr04	irgsp1_rep	mRNA	4638237	4640929	.	-	.	ID=Os04t0167800-01;Name=Os04t0167800-01;Locus_id=Os04g0167800;Note=Similar to Chalcone reductase homologue (Fragment).;Transcript_evidence=AK108398 (DDBJ%2C Best hit);ORF_evidence=Q01HB5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldo/keto reductase (IPR001395),Aldo/keto reductase%2C conserved site (IPR018170),Aldo/keto reductase subgroup (IPR020471),NADP-dependent oxidoreductase domain (IPR023210);NIAS_FLcDNA=002-142-F12;Expression=AK108398;TENOR=Os04t0167800-01;KEGG=Os04t0167800-01
Chr04	irgsp1_rep	five_prime_UTR	4640886	4640929	.	-	.	Parent=Os04t0167800-01
Chr04	irgsp1_rep	CDS	4640097	4640885	.	-	0	Parent=Os04t0167800-01
Chr04	irgsp1_rep	CDS	4638360	4638584	.	-	0	Parent=Os04t0167800-01
Chr04	irgsp1_rep	three_prime_UTR	4638237	4638359	.	-	.	Parent=Os04t0167800-01
Chr04	irgsp1_rep	mRNA	4640094	4640848	.	+	.	ID=Os04t0167851-00;Name=Os04t0167851-00;Locus_id=Os04g0167851;Note=Hypothetical gene.;Transcript_evidence=EU946224 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0167851-00
Chr04	irgsp1_rep	CDS	4640094	4640848	.	+	0	Parent=Os04t0167851-00
Chr04	irgsp1_rep	mRNA	4644736	4644996	.	-	.	ID=Os04t0167875-00;Name=Os04t0167875-00;Locus_id=Os04g0167875;Note=Protein phosphatase 2C-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001173765.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);TENOR=Os04t0167875-00
Chr04	irgsp1_rep	CDS	4644736	4644996	.	-	0	Parent=Os04t0167875-00
Chr04	irgsp1_rep	mRNA	4649129	4649773	.	-	.	ID=Os04t0167900-00;Name=Os04t0167900-00;Locus_id=Os04g0167900;Oryzabase Gene Symbol Synonym(s)=OsPP2C37%2C PP2C37%2C OsPP61;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C37%2C protein phosphatase 2C 37 protein phosphatase 61;Note=Protein phosphatase 2C-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XP01 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);Oryzabase=17911;TENOR=Os04t0167900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	4649129	4649773	.	-	0	Parent=Os04t0167900-00
Chr04	irgsp1_rep	mRNA	4651469	4652572	.	-	.	ID=Os04t0168000-01;Name=Os04t0168000-01;Locus_id=Os04g0168000;Note=Conserved hypothetical protein.;Transcript_evidence=AK109174 (DDBJ%2C Best hit);ORF_evidence=Q7XX76 (UniProt);NIAS_FLcDNA=002-155-H09;Expression=AK109174;TENOR=Os04t0168000-01;KEGG=Os04t0168000-01
Chr04	irgsp1_rep	five_prime_UTR	4652572	4652572	.	-	.	Parent=Os04t0168000-01
Chr04	irgsp1_rep	CDS	4652144	4652571	.	-	0	Parent=Os04t0168000-01
Chr04	irgsp1_rep	CDS	4651828	4652047	.	-	1	Parent=Os04t0168000-01
Chr04	irgsp1_rep	three_prime_UTR	4651469	4651827	.	-	.	Parent=Os04t0168000-01
Chr04	irgsp1_rep	mRNA	4674744	4675232	.	-	.	ID=Os04t0168100-00;Name=Os04t0168100-00;Locus_id=Os04g0168100;Oryzabase Gene Name Synonym(s)=EPF zinc-finger%2C plant-specific EPF subclass Cys2-His2 zinc-finger protein;Note=Hypothetical conserved gene.;Transcript_evidence=AJ577365 (DDBJ);ORF_evidence=NP_188954.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087);Oryzabase=20536;TENOR=Os04t0168100-00;KEGG=Os04t0168100-00
Chr04	irgsp1_rep	CDS	4674744	4675232	.	-	0	Parent=Os04t0168100-00
Chr04	irgsp1_rep	mRNA	4689042	4689554	.	-	.	ID=Os04t0168300-01;Name=Os04t0168300-01;Locus_id=Os04g0168300;Note=Conserved hypothetical protein.;Transcript_evidence=AK111111 (DDBJ%2C Best hit);ORF_evidence=NP_001060135.2 (RefSeq);NIAS_FLcDNA=002-176-A11;Expression=AK111111;TENOR=Os04t0168300-01;KEGG=Os04t0168300-01
Chr04	irgsp1_rep	five_prime_UTR	4689476	4689554	.	-	.	Parent=Os04t0168300-01
Chr04	irgsp1_rep	CDS	4689260	4689475	.	-	0	Parent=Os04t0168300-01
Chr04	irgsp1_rep	three_prime_UTR	4689042	4689259	.	-	.	Parent=Os04t0168300-01
Chr04	irgsp1_rep	mRNA	4690898	4692354	.	+	.	ID=Os04t0168400-01;Name=Os04t0168400-01;Locus_id=Os04g0168400;Note=Similar to Embryogenesis transmembrane protein.;Transcript_evidence=AK241564 (DDBJ%2C Best hit);ORF_evidence=B6TV85 (UniProt);NIAS_FLcDNA=J065179A07;TENOR=Os04t0168400-01;KEGG=Os04t0168400-01
Chr04	irgsp1_rep	five_prime_UTR	4690898	4691032	.	+	.	Parent=Os04t0168400-01
Chr04	irgsp1_rep	five_prime_UTR	4691176	4691277	.	+	.	Parent=Os04t0168400-01
Chr04	irgsp1_rep	five_prime_UTR	4691603	4691616	.	+	.	Parent=Os04t0168400-01
Chr04	irgsp1_rep	CDS	4691617	4692171	.	+	0	Parent=Os04t0168400-01
Chr04	irgsp1_rep	three_prime_UTR	4692172	4692354	.	+	.	Parent=Os04t0168400-01
Chr04	irgsp1_rep	mRNA	4738375	4741229	.	+	.	ID=Os04t0169100-01;Name=Os04t0169100-01;Locus_id=Os04g0169100;CGSNL Gene Symbol=ETR2;CGSNL Gene Name=ETHYLENE RESPONSE 2;Oryzabase Gene Symbol Synonym(s)=etr2%2C OsPK1%2C PK1%2C ERL1%2C OsETR2%2C OsERL1%2C OS-ETR2%2C OsERS3;Oryzabase Gene Name Synonym(s)=subfamily I ethylene receptor%2C ethylene receptor 2;Note=Similar to Ethylene receptor-like protein 1.;Transcript_evidence=AK111765 (DDBJ%2C Best hit);ORF_evidence=Q944U0 (UniProt);GO=Biological Process: signal transduction (GO:0007165),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=GAF (IPR003018),ATPase-like%2C ATP-binding domain (IPR003594),Signal transduction histidine kinase%2C homodimeric (IPR009082);NIAS_FLcDNA=J023056E19;Oryzabase=8925;Expression=AK111765;TENOR=Os04t0169100-01;KEGG=Os04t0169100-01
Chr04	irgsp1_rep	five_prime_UTR	4738375	4739206	.	+	.	Parent=Os04t0169100-01
Chr04	irgsp1_rep	CDS	4739207	4741219	.	+	0	Parent=Os04t0169100-01
Chr04	irgsp1_rep	three_prime_UTR	4741220	4741229	.	+	.	Parent=Os04t0169100-01
Chr04	irgsp1_rep	mRNA	4738378	4742148	.	+	.	ID=Os04t0169100-02;Name=Os04t0169100-02;Locus_id=Os04g0169100;RAP-DB Gene Symbol Synonym(s)=ETR2%2C OsETR2%2C OS-ETR2%2C etr2%2C OsPK1%2C PK1%2C ERL1%2C OsERL1%2C OsERS3;RAP-DB Gene Name Synonym(s)=ETHYLENE RESPONSE 2%2C ETHYLENE RESPONSE2%2C subfamily I ethylene receptor;CGSNL Gene Symbol=ETR2;CGSNL Gene Name=ETHYLENE RESPONSE 2;Oryzabase Gene Symbol Synonym(s)=etr2%2C OsPK1%2C PK1%2C ERL1%2C OsETR2%2C OsERL1%2C OS-ETR2%2C OsERS3;Oryzabase Gene Name Synonym(s)=subfamily I ethylene receptor%2C ethylene receptor 2;Note=Ethylene receptor%2C Ethylene response%2C Floral transition and starch accumulation;Transcript_evidence=AF420319 (Genbank),AK111748 (Genbank);ORF_evidence=Q944U0 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: signal transduction (GO:0007165),Biological Process: ethylene mediated signaling pathway (GO:0009873),Biological Process: peptidyl-histidine phosphorylation (GO:0018106),Cellular Component: endoplasmic reticulum membrane (GO:0005789),Molecular Function: two-component sensor activity (GO:0000155),Molecular Function: two-component response regulator activity (GO:0000156),Molecular Function: protein histidine kinase activity (GO:0004673),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),GAF domain (IPR003018),ATPase-like%2C ATP-binding domain (IPR003594),Signal transduction histidine kinase%2C core (IPR005467),Signal transduction histidine kinase%2C homodimeric (IPR009082),CheY-like superfamily (IPR011006),Signal transduction histidine kinase%2C hybrid-type%2C ethylene sensor (IPR014525);NIAS_FLcDNA=J023048C17;Manual Curation=June 1%2C 2009;Literature_PMID=19417056;Oryzabase=8925;Expression=AK111748;TENOR=Os04t0169100-02;KEGG=Os04t0169100-02
Chr04	irgsp1_rep	five_prime_UTR	4738378	4738833	.	+	.	Parent=Os04t0169100-02
Chr04	irgsp1_rep	five_prime_UTR	4739057	4739206	.	+	.	Parent=Os04t0169100-02
Chr04	irgsp1_rep	CDS	4739207	4740970	.	+	0	Parent=Os04t0169100-02
Chr04	irgsp1_rep	CDS	4741341	4741868	.	+	0	Parent=Os04t0169100-02
Chr04	irgsp1_rep	three_prime_UTR	4741869	4742148	.	+	.	Parent=Os04t0169100-02
Chr04	irgsp1_rep	mRNA	4749123	4752350	.	+	.	ID=Os04t0169300-01;Name=Os04t0169300-01;Locus_id=Os04g0169300;Note=Conserved hypothetical protein.;Transcript_evidence=AK120016 (DDBJ%2C Best hit);ORF_evidence=NP_001176179.1 (RefSeq);NIAS_FLcDNA=002-186-B09;Expression=AK120016;TENOR=Os04t0169300-01;KEGG=Os04t0169300-01
Chr04	irgsp1_rep	five_prime_UTR	4749123	4749919	.	+	.	Parent=Os04t0169300-01
Chr04	irgsp1_rep	CDS	4749920	4750012	.	+	0	Parent=Os04t0169300-01
Chr04	irgsp1_rep	CDS	4750310	4750394	.	+	0	Parent=Os04t0169300-01
Chr04	irgsp1_rep	CDS	4750487	4750621	.	+	2	Parent=Os04t0169300-01
Chr04	irgsp1_rep	CDS	4750727	4750776	.	+	2	Parent=Os04t0169300-01
Chr04	irgsp1_rep	three_prime_UTR	4750777	4750832	.	+	.	Parent=Os04t0169300-01
Chr04	irgsp1_rep	three_prime_UTR	4751920	4752350	.	+	.	Parent=Os04t0169300-01
Chr04	irgsp1_rep	mRNA	4769960	4770679	.	-	.	ID=Os04t0169500-01;Name=Os04t0169500-01;Locus_id=Os04g0169500;CGSNL Gene Symbol=DUF668-6;CGSNL Gene Name=DUF668 FAMILY MEMBER 6;Oryzabase Gene Symbol Synonym(s)=OsDUF668-6;Oryzabase Gene Name Synonym(s)=DUF668 family member 6;Note=Similar to Avr9/Cf-9 rapidly elicited protein 137.;Transcript_evidence=AK062453 (DDBJ%2C Best hit);ORF_evidence=Q9FQZ2 (UniProt);InterPro=Protein of unknown function DUF668 (IPR007700);NIAS_FLcDNA=001-103-C07;Oryzabase=23482;Expression=AK062453;TENOR=Os04t0169500-01;KEGG=Os04t0169500-01
Chr04	irgsp1_rep	CDS	4770359	4770679	.	-	0	Parent=Os04t0169500-01
Chr04	irgsp1_rep	three_prime_UTR	4769960	4770358	.	-	.	Parent=Os04t0169500-01
Chr04	irgsp1_rep	mRNA	4770384	4771938	.	+	.	ID=Os04t0169666-00;Name=Os04t0169666-00;Locus_id=Os04g0169666;Note=Hypothetical protein.;Transcript_evidence=tplb0021m07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0169666-00
Chr04	irgsp1_rep	five_prime_UTR	4770384	4770513	.	+	.	Parent=Os04t0169666-00
Chr04	irgsp1_rep	CDS	4770514	4770804	.	+	0	Parent=Os04t0169666-00
Chr04	irgsp1_rep	three_prime_UTR	4770805	4770851	.	+	.	Parent=Os04t0169666-00
Chr04	irgsp1_rep	three_prime_UTR	4771050	4771938	.	+	.	Parent=Os04t0169666-00
Chr04	irgsp1_rep	mRNA	4814959	4817390	.	+	.	ID=Os04t0170166-01;Name=Os04t0170166-01;Locus_id=Os04g0170166;Note=Hypothetical conserved gene.;Transcript_evidence=AK288747 (DDBJ%2C Best hit);ORF_evidence=Q6YYN3 (UniProt);NIAS_FLcDNA=J090064L01;TENOR=Os04t0170166-01;KEGG=Os04t0170166-01
Chr04	irgsp1_rep	five_prime_UTR	4814959	4815520	.	+	.	Parent=Os04t0170166-01
Chr04	irgsp1_rep	CDS	4815521	4815751	.	+	0	Parent=Os04t0170166-01
Chr04	irgsp1_rep	three_prime_UTR	4815752	4817390	.	+	.	Parent=Os04t0170166-01
Chr04	irgsp1_rep	mRNA	4816682	4822779	.	-	.	ID=Os04t0170500-01;Name=Os04t0170500-01;Locus_id=Os04g0170500;Note=Zinc finger%2C CCHC-type domain containing protein.;Transcript_evidence=AK103323 (DDBJ%2C Best hit);ORF_evidence=Q5H9Y7 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Zinc finger%2C CCHC retroviral-type (IPR013084);NIAS_FLcDNA=J033125K03;Expression=AK103323;TENOR=Os04t0170500-01;KEGG=Os04t0170500-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	4822779	4822779	.	-	.	Parent=Os04t0170500-01
Chr04	irgsp1_rep	CDS	4822301	4822778	.	-	0	Parent=Os04t0170500-01
Chr04	irgsp1_rep	CDS	4817011	4817045	.	-	2	Parent=Os04t0170500-01
Chr04	irgsp1_rep	three_prime_UTR	4816682	4817010	.	-	.	Parent=Os04t0170500-01
Chr04	irgsp1_rep	mRNA	4835200	4835532	.	-	.	ID=Os04t0170866-00;Name=Os04t0170866-00;Locus_id=Os04g0170866;Note=Conserved hypothetical protein.;Transcript_evidence=BT039178 (DDBJ);ORF_evidence=A2WJQ3 (UniProt);TENOR=Os04t0170866-00
Chr04	irgsp1_rep	five_prime_UTR	4835456	4835532	.	-	.	Parent=Os04t0170866-00
Chr04	irgsp1_rep	CDS	4835327	4835455	.	-	0	Parent=Os04t0170866-00
Chr04	irgsp1_rep	three_prime_UTR	4835200	4835326	.	-	.	Parent=Os04t0170866-00
Chr04	irgsp1_rep	mRNA	4853362	4853694	.	-	.	ID=Os04t0171232-00;Name=Os04t0171232-00;Locus_id=Os04g0171232;Note=Conserved hypothetical protein.;Transcript_evidence=BT039178 (DDBJ);ORF_evidence=A2WJQ3 (UniProt);TENOR=Os04t0171232-00
Chr04	irgsp1_rep	five_prime_UTR	4853618	4853694	.	-	.	Parent=Os04t0171232-00
Chr04	irgsp1_rep	CDS	4853489	4853617	.	-	0	Parent=Os04t0171232-00
Chr04	irgsp1_rep	three_prime_UTR	4853362	4853488	.	-	.	Parent=Os04t0171232-00
Chr04	irgsp1_rep	mRNA	4869932	4872151	.	+	.	ID=Os04t0171600-01;Name=Os04t0171600-01;Locus_id=Os04g0171600;Note=Similar to CytoChrome P450 79A1 (EC 1.14.13.41) (Tyrosine N-monooxygenase) (CytoChrome P450Tyr).;Transcript_evidence=AK100766 (DDBJ%2C Best hit);ORF_evidence=Q01MC1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J023119K20;Expression=AK100766;TENOR=Os04t0171600-01;KEGG=Os04t0171600-01 (EC:1.14.13.41)
Chr04	irgsp1_rep	five_prime_UTR	4869932	4869960	.	+	.	Parent=Os04t0171600-01
Chr04	irgsp1_rep	CDS	4869961	4870908	.	+	0	Parent=Os04t0171600-01
Chr04	irgsp1_rep	CDS	4871536	4872063	.	+	0	Parent=Os04t0171600-01
Chr04	irgsp1_rep	three_prime_UTR	4872064	4872151	.	+	.	Parent=Os04t0171600-01
Chr04	irgsp1_rep	mRNA	4869933	4871107	.	+	.	ID=Os04t0171600-02;Name=Os04t0171600-02;Locus_id=Os04g0171600;Note=Similar to OSIGBa0114I04.1 protein.;Transcript_evidence=AK070154 (DDBJ%2C Best hit);ORF_evidence=Q01MC1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);NIAS_FLcDNA=J023043F21;Expression=AK070154;TENOR=Os04t0171600-02;KEGG=Os04t0171600-02
Chr04	irgsp1_rep	five_prime_UTR	4869933	4869960	.	+	.	Parent=Os04t0171600-02
Chr04	irgsp1_rep	CDS	4869961	4870953	.	+	0	Parent=Os04t0171600-02
Chr04	irgsp1_rep	three_prime_UTR	4870954	4871107	.	+	.	Parent=Os04t0171600-02
Chr04	irgsp1_rep	mRNA	4874385	4878321	.	+	.	ID=Os04t0171800-01;Name=Os04t0171800-01;Locus_id=Os04g0171800;Note=Similar to CytoChrome P450 79A1 (EC 1.14.13.41) (Tyrosine N-monooxygenase) (CytoChrome P450Tyr).;Transcript_evidence=AK121124 (DDBJ%2C Best hit);ORF_evidence=Q01MC1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J023074N24;Expression=AK121124;TENOR=Os04t0171800-01;KEGG=Os04t0171800-01 (EC:1.14.13.-%2C EC:1.14.13.41)
Chr04	irgsp1_rep	five_prime_UTR	4874385	4875699	.	+	.	Parent=Os04t0171800-01
Chr04	irgsp1_rep	CDS	4875700	4876713	.	+	0	Parent=Os04t0171800-01
Chr04	irgsp1_rep	CDS	4877340	4877978	.	+	0	Parent=Os04t0171800-01
Chr04	irgsp1_rep	three_prime_UTR	4877979	4878321	.	+	.	Parent=Os04t0171800-01
Chr04	irgsp1_rep	mRNA	4915137	4916720	.	-	.	ID=Os04t0172100-01;Name=Os04t0172100-01;Locus_id=Os04g0172100;Note=Conserved hypothetical protein.;Transcript_evidence=AK064569 (DDBJ%2C Best hit);ORF_evidence=Q7XXJ3 (UniProt);NIAS_FLcDNA=002-112-D07;TENOR=Os04t0172100-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	4916143	4916720	.	-	.	Parent=Os04t0172100-01
Chr04	irgsp1_rep	CDS	4916014	4916142	.	-	0	Parent=Os04t0172100-01
Chr04	irgsp1_rep	three_prime_UTR	4915137	4916013	.	-	.	Parent=Os04t0172100-01
Chr04	irgsp1_rep	mRNA	4924085	4925539	.	-	.	ID=Os04t0172400-01;Name=Os04t0172400-01;Locus_id=Os04g0172400;CGSNL Gene Symbol=AT19;CGSNL Gene Name=ACYLTRANSFERASE 19;Oryzabase Gene Symbol Synonym(s)=OsAT19%2C OsAt19;Oryzabase Gene Name Synonym(s)=acyltransferase 19;Note=Transferase family protein.;Transcript_evidence=AK064755 (DDBJ%2C Best hit);ORF_evidence=Q5H9W1 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=002-120-G03;Oryzabase=11751;Expression=AK064755;TENOR=Os04t0172400-01;KEGG=Os04t0172400-01
Chr04	irgsp1_rep	five_prime_UTR	4925468	4925539	.	-	.	Parent=Os04t0172400-01
Chr04	irgsp1_rep	CDS	4924190	4925467	.	-	0	Parent=Os04t0172400-01
Chr04	irgsp1_rep	three_prime_UTR	4924085	4924189	.	-	.	Parent=Os04t0172400-01
Chr04	irgsp1_rep	mRNA	4939802	4940413	.	+	.	ID=Os04t0172560-01;Name=Os04t0172560-01;Locus_id=Os04g0172560;Note=Hypothetical gene.;Transcript_evidence=AK107715 (DDBJ%2C Best hit);ORF_evidence=Q6Z3Y7 (UniProt);NIAS_FLcDNA=002-132-E02;TENOR=Os04t0172560-01
Chr04	irgsp1_rep	five_prime_UTR	4939802	4939802	.	+	.	Parent=Os04t0172560-01
Chr04	irgsp1_rep	CDS	4939803	4940066	.	+	0	Parent=Os04t0172560-01
Chr04	irgsp1_rep	three_prime_UTR	4940067	4940413	.	+	.	Parent=Os04t0172560-01
Chr04	irgsp1_rep	mRNA	4941896	4942519	.	+	.	ID=Os04t0172600-01;Name=Os04t0172600-01;Locus_id=Os04g0172600;Note=Non-protein coding transcript.;Transcript_evidence=AK121294 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023110C02;TENOR=Os04t0172600-01
Chr04	irgsp1_rep	exon	4941896	4942051	.	+	.	Parent=Os04t0172600-01
Chr04	irgsp1_rep	exon	4942206	4942519	.	+	.	Parent=Os04t0172600-01
Chr04	irgsp1_rep	mRNA	4965529	4969401	.	+	.	ID=Os04t0173300-01;Name=Os04t0173300-01;Locus_id=Os04g0173300;Note=Hypothetical gene.;Transcript_evidence=AK063632 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-118-F10;Expression=AK063632;TENOR=Os04t0173300-01;KEGG=Os04t0173300-01
Chr04	irgsp1_rep	five_prime_UTR	4965529	4965623	.	+	.	Parent=Os04t0173300-01
Chr04	irgsp1_rep	CDS	4965624	4965778	.	+	0	Parent=Os04t0173300-01
Chr04	irgsp1_rep	CDS	4968582	4968680	.	+	1	Parent=Os04t0173300-01
Chr04	irgsp1_rep	CDS	4968842	4968857	.	+	1	Parent=Os04t0173300-01
Chr04	irgsp1_rep	three_prime_UTR	4968858	4969401	.	+	.	Parent=Os04t0173300-01
Chr04	irgsp1_rep	mRNA	4965529	4975289	.	+	.	ID=Os04t0173300-02;Name=Os04t0173300-02;Locus_id=Os04g0173300;Note=Similar to Transmembrane protein 115.;Transcript_evidence=AK061278 (DDBJ%2C Best hit);ORF_evidence=B6TIG9 (UniProt);NIAS_FLcDNA=006-212-F03;Expression=AK061278;TENOR=Os04t0173300-02;KEGG=Os04t0173300-02
Chr04	irgsp1_rep	five_prime_UTR	4965529	4965778	.	+	.	Parent=Os04t0173300-02
Chr04	irgsp1_rep	five_prime_UTR	4968582	4968667	.	+	.	Parent=Os04t0173300-02
Chr04	irgsp1_rep	CDS	4968668	4968680	.	+	0	Parent=Os04t0173300-02
Chr04	irgsp1_rep	CDS	4974572	4974705	.	+	2	Parent=Os04t0173300-02
Chr04	irgsp1_rep	CDS	4974827	4974931	.	+	0	Parent=Os04t0173300-02
Chr04	irgsp1_rep	three_prime_UTR	4974932	4975289	.	+	.	Parent=Os04t0173300-02
Chr04	irgsp1_rep	mRNA	4969979	4975272	.	+	.	ID=Os04t0173300-03;Name=Os04t0173300-03;Locus_id=Os04g0173300;Note=Conserved hypothetical protein.;Transcript_evidence=AK069921 (DDBJ%2C Best hit),AK069845 (DDBJ%2C Best hit);ORF_evidence=B9F8I6 (UniProt);NIAS_FLcDNA=J023037C04,J023030M23;TENOR=Os04t0173300-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	4969979	4974802	.	+	.	Parent=Os04t0173300-03
Chr04	irgsp1_rep	CDS	4974803	4974931	.	+	0	Parent=Os04t0173300-03
Chr04	irgsp1_rep	three_prime_UTR	4974932	4975272	.	+	.	Parent=Os04t0173300-03
Chr04	irgsp1_rep	mRNA	5005112	5006206	.	-	.	ID=Os04t0173800-01;Name=Os04t0173800-01;Locus_id=Os04g0173800;Oryzabase Gene Name Synonym(s)=lectin%2C Agglutinin;Note=Lectin precursor (Agglutinin).;Transcript_evidence=AK103206 (DDBJ%2C Best hit);ORF_evidence=Q9XFF2 (UniProt);GO=Molecular Function: chitin binding (GO:0008061);InterPro=Chitin-binding%2C type 1 (IPR001002),Chitin-binding%2C type 1%2C conserved site (IPR018371);NIAS_FLcDNA=J033122E14;Oryzabase=13738;Expression=AK103206;TENOR=Os04t0173800-01;KEGG=Os04t0173800-01
Chr04	irgsp1_rep	five_prime_UTR	5006137	5006206	.	-	.	Parent=Os04t0173800-01
Chr04	irgsp1_rep	CDS	5005453	5006136	.	-	0	Parent=Os04t0173800-01
Chr04	irgsp1_rep	three_prime_UTR	5005112	5005452	.	-	.	Parent=Os04t0173800-01
Chr04	irgsp1_rep	mRNA	5041230	5041910	.	-	.	ID=Os04t0174100-00;Name=Os04t0174100-00;Locus_id=Os04g0174100;Note=Similar to OSIGBa0114I04.1 protein.;Transcript_evidence=FJ593638 (DDBJ);ORF_evidence=Q01MC1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os04t0174100-00
Chr04	irgsp1_rep	CDS	5041230	5041910	.	-	0	Parent=Os04t0174100-00
Chr04	irgsp1_rep	mRNA	5058331	5061257	.	-	.	ID=Os04t0174200-01;Name=Os04t0174200-01;Locus_id=Os04g0174200;Note=Similar to OsRAD23-like.;Transcript_evidence=AK241597 (DDBJ%2C Best hit);ORF_evidence=C8TF44 (UniProt);NIAS_FLcDNA=J065183F01;TENOR=Os04t0174200-01;KEGG=Os04t0174200-01
Chr04	irgsp1_rep	five_prime_UTR	5060931	5061257	.	-	.	Parent=Os04t0174200-01
Chr04	irgsp1_rep	five_prime_UTR	5060449	5060539	.	-	.	Parent=Os04t0174200-01
Chr04	irgsp1_rep	five_prime_UTR	5058611	5059855	.	-	.	Parent=Os04t0174200-01
Chr04	irgsp1_rep	CDS	5058389	5058610	.	-	0	Parent=Os04t0174200-01
Chr04	irgsp1_rep	three_prime_UTR	5058331	5058388	.	-	.	Parent=Os04t0174200-01
Chr04	irgsp1_rep	mRNA	5111957	5112821	.	-	.	ID=Os04t0174800-01;Name=Os04t0174800-01;Locus_id=Os04g0174800;Note=Similar to predicted protein.;Transcript_evidence=AK242521 (DDBJ%2C Best hit);ORF_evidence=NP_565377.1 (RefSeq);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J080313L24;TENOR=Os04t0174800-01;KEGG=Os04t0174800-01
Chr04	irgsp1_rep	CDS	5112090	5112821	.	-	0	Parent=Os04t0174800-01
Chr04	irgsp1_rep	three_prime_UTR	5111957	5112089	.	-	.	Parent=Os04t0174800-01
Chr04	irgsp1_rep	mRNA	5112752	5113651	.	+	.	ID=Os04t0174850-00;Name=Os04t0174850-00;Locus_id=Os04g0174850;Note=Hypothetical protein.;Transcript_evidence=AK357511 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0174850-00
Chr04	irgsp1_rep	five_prime_UTR	5112752	5112894	.	+	.	Parent=Os04t0174850-00
Chr04	irgsp1_rep	CDS	5112895	5113097	.	+	0	Parent=Os04t0174850-00
Chr04	irgsp1_rep	CDS	5113504	5113633	.	+	1	Parent=Os04t0174850-00
Chr04	irgsp1_rep	three_prime_UTR	5113634	5113651	.	+	.	Parent=Os04t0174850-00
Chr04	irgsp1_rep	mRNA	5121027	5124372	.	+	.	ID=Os04t0174900-01;Name=Os04t0174900-01;Locus_id=Os04g0174900;Note=Similar to Acyl-protein thioesterase 2.;Transcript_evidence=AK240831 (DDBJ%2C Best hit);ORF_evidence=Q84VJ1 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Phospholipase/carboxylesterase/thioesterase (IPR003140);NIAS_FLcDNA=J065014E07;TENOR=Os04t0174900-01;KEGG=Os04t0174900-01 (EC:3.1.1.5)
Chr04	irgsp1_rep	five_prime_UTR	5121027	5121112	.	+	.	Parent=Os04t0174900-01
Chr04	irgsp1_rep	CDS	5121113	5121140	.	+	0	Parent=Os04t0174900-01
Chr04	irgsp1_rep	CDS	5121232	5121343	.	+	2	Parent=Os04t0174900-01
Chr04	irgsp1_rep	CDS	5122665	5122701	.	+	1	Parent=Os04t0174900-01
Chr04	irgsp1_rep	CDS	5122928	5122997	.	+	0	Parent=Os04t0174900-01
Chr04	irgsp1_rep	CDS	5123120	5123224	.	+	2	Parent=Os04t0174900-01
Chr04	irgsp1_rep	CDS	5123438	5123588	.	+	2	Parent=Os04t0174900-01
Chr04	irgsp1_rep	CDS	5123673	5123755	.	+	1	Parent=Os04t0174900-01
Chr04	irgsp1_rep	CDS	5123876	5123969	.	+	2	Parent=Os04t0174900-01
Chr04	irgsp1_rep	CDS	5124063	5124147	.	+	1	Parent=Os04t0174900-01
Chr04	irgsp1_rep	three_prime_UTR	5124148	5124372	.	+	.	Parent=Os04t0174900-01
Chr04	irgsp1_rep	mRNA	5124462	5126726	.	-	.	ID=Os04t0175000-01;Name=Os04t0175000-01;Locus_id=Os04g0175000;Note=Hypothetical protein.;Transcript_evidence=AK101746 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033061P03;Expression=AK101746;TENOR=Os04t0175000-01;KEGG=Os04t0175000-01
Chr04	irgsp1_rep	five_prime_UTR	5126364	5126726	.	-	.	Parent=Os04t0175000-01
Chr04	irgsp1_rep	CDS	5125920	5126363	.	-	0	Parent=Os04t0175000-01
Chr04	irgsp1_rep	three_prime_UTR	5125726	5125919	.	-	.	Parent=Os04t0175000-01
Chr04	irgsp1_rep	three_prime_UTR	5125235	5125292	.	-	.	Parent=Os04t0175000-01
Chr04	irgsp1_rep	three_prime_UTR	5124950	5125050	.	-	.	Parent=Os04t0175000-01
Chr04	irgsp1_rep	three_prime_UTR	5124462	5124814	.	-	.	Parent=Os04t0175000-01
Chr04	irgsp1_rep	mRNA	5123331	5124801	.	-	.	ID=Os04t0175000-02;Name=Os04t0175000-02;Locus_id=Os04g0175000;Note=Non-protein coding transcript.;Transcript_evidence=AK063481 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-116-B10;TENOR=Os04t0175000-02
Chr04	irgsp1_rep	exon	5123331	5124801	.	-	.	Parent=Os04t0175000-02
Chr04	irgsp1_rep	mRNA	5135227	5142111	.	-	.	ID=Os04t0175300-01;Name=Os04t0175300-01;Locus_id=Os04g0175300;Note=Conserved hypothetical protein.;Transcript_evidence=AK121287 (DDBJ%2C Best hit);ORF_evidence=B8AR62 (UniProt);NIAS_FLcDNA=J023108P15;Expression=AK121287;TENOR=Os04t0175300-01;KEGG=Os04t0175300-01
Chr04	irgsp1_rep	five_prime_UTR	5141462	5142111	.	-	.	Parent=Os04t0175300-01
Chr04	irgsp1_rep	five_prime_UTR	5141252	5141368	.	-	.	Parent=Os04t0175300-01
Chr04	irgsp1_rep	five_prime_UTR	5140828	5141110	.	-	.	Parent=Os04t0175300-01
Chr04	irgsp1_rep	five_prime_UTR	5140657	5140664	.	-	.	Parent=Os04t0175300-01
Chr04	irgsp1_rep	CDS	5140249	5140656	.	-	0	Parent=Os04t0175300-01
Chr04	irgsp1_rep	three_prime_UTR	5135227	5140248	.	-	.	Parent=Os04t0175300-01
Chr04	irgsp1_rep	mRNA	5136396	5141674	.	-	.	ID=Os04t0175300-02;Name=Os04t0175300-02;Locus_id=Os04g0175300;Note=Conserved hypothetical protein.;Transcript_evidence=AK120827 (DDBJ%2C Best hit);ORF_evidence=B8AR62 (UniProt);NIAS_FLcDNA=J023019E13;Expression=AK120827;TENOR=Os04t0175300-02;KEGG=Os04t0175300-02
Chr04	irgsp1_rep	five_prime_UTR	5141462	5141674	.	-	.	Parent=Os04t0175300-02
Chr04	irgsp1_rep	five_prime_UTR	5141252	5141368	.	-	.	Parent=Os04t0175300-02
Chr04	irgsp1_rep	five_prime_UTR	5140828	5141110	.	-	.	Parent=Os04t0175300-02
Chr04	irgsp1_rep	five_prime_UTR	5140657	5140664	.	-	.	Parent=Os04t0175300-02
Chr04	irgsp1_rep	CDS	5140249	5140656	.	-	0	Parent=Os04t0175300-02
Chr04	irgsp1_rep	three_prime_UTR	5136396	5140248	.	-	.	Parent=Os04t0175300-02
Chr04	irgsp1_rep	mRNA	5135592	5136326	.	+	.	ID=Os04t0175400-01;Name=Os04t0175400-01;Locus_id=Os04g0175400;Note=Conserved hypothetical protein.;Transcript_evidence=AK107892 (DDBJ%2C Best hit);ORF_evidence=B8AR63 (UniProt);NIAS_FLcDNA=002-134-E09;Expression=AK107892;TENOR=Os04t0175400-01;KEGG=Os04t0175400-01
Chr04	irgsp1_rep	five_prime_UTR	5135592	5135664	.	+	.	Parent=Os04t0175400-01
Chr04	irgsp1_rep	CDS	5135665	5136102	.	+	0	Parent=Os04t0175400-01
Chr04	irgsp1_rep	three_prime_UTR	5136103	5136326	.	+	.	Parent=Os04t0175400-01
Chr04	irgsp1_rep	mRNA	5152085	5153404	.	+	.	ID=Os04t0175450-00;Name=Os04t0175450-00;Locus_id=Os04g0175450;Note=Hypothetical protein.;Transcript_evidence=tplb0030e16 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0175450-00
Chr04	irgsp1_rep	five_prime_UTR	5152085	5152085	.	+	.	Parent=Os04t0175450-00
Chr04	irgsp1_rep	CDS	5152086	5153255	.	+	0	Parent=Os04t0175450-00
Chr04	irgsp1_rep	three_prime_UTR	5153256	5153404	.	+	.	Parent=Os04t0175450-00
Chr04	irgsp1_rep	mRNA	5152089	5152757	.	-	.	ID=Os04t0175500-00;Name=Os04t0175500-00;Locus_id=Os04g0175500;CGSNL Gene Symbol=AT12;CGSNL Gene Name=ACYLTRANSFERASE 12;Oryzabase Gene Symbol Synonym(s)=OsAT12%2C OsAt12;Oryzabase Gene Name Synonym(s)=acyltransferase 12;Note=Transferase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001052160.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);Oryzabase=11744;TENOR=Os04t0175500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	5152089	5152757	.	-	0	Parent=Os04t0175500-00
Chr04	irgsp1_rep	mRNA	5161947	5167404	.	+	.	ID=Os04t0175600-01;Name=Os04t0175600-01;Locus_id=Os04g0175600;CGSNL Gene Symbol=COMTL5;CGSNL Gene Name=CAFFEIC ACID 3-O-METHYLTRANSFERASE LIKE 5;Oryzabase Gene Symbol Synonym(s)=OsCOMTL5;Note=Similar to 0-methyltransferase (EC 2.1.1.6) (Fragment).;Transcript_evidence=AK098998 (DDBJ%2C Best hit),AK072016 (DDBJ%2C Best hit);ORF_evidence=Q96565 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: O-methyltransferase activity (GO:0008171),Molecular Function: protein dimerization activity (GO:0046983);InterPro=O-methyltransferase%2C family 2 (IPR001077),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Plant methyltransferase dimerisation (IPR012967),O-methyltransferase%2C COMT%2C eukaryota (IPR016461);NIAS_FLcDNA=J013104D16,J013102F20;Oryzabase=10445;TENOR=Os04t0175600-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	5161947	5161970	.	+	.	Parent=Os04t0175600-01
Chr04	irgsp1_rep	CDS	5161971	5162425	.	+	0	Parent=Os04t0175600-01
Chr04	irgsp1_rep	CDS	5162709	5163022	.	+	1	Parent=Os04t0175600-01
Chr04	irgsp1_rep	CDS	5166736	5166803	.	+	2	Parent=Os04t0175600-01
Chr04	irgsp1_rep	CDS	5166960	5167259	.	+	0	Parent=Os04t0175600-01
Chr04	irgsp1_rep	three_prime_UTR	5167260	5167404	.	+	.	Parent=Os04t0175600-01
Chr04	irgsp1_rep	mRNA	5167705	5170461	.	-	.	ID=Os04t0175750-01;Name=Os04t0175750-01;Locus_id=Os04g0175750;Note=Non-protein coding transcript.;Transcript_evidence=AK242270 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J075186L12;TENOR=Os04t0175750-01
Chr04	irgsp1_rep	exon	5169925	5170461	.	-	.	Parent=Os04t0175750-01
Chr04	irgsp1_rep	exon	5168224	5169650	.	-	.	Parent=Os04t0175750-01
Chr04	irgsp1_rep	exon	5167705	5168120	.	-	.	Parent=Os04t0175750-01
Chr04	irgsp1_rep	mRNA	5178491	5186485	.	+	.	ID=Os04t0175900-01;Name=Os04t0175900-01;Locus_id=Os04g0175900;CGSNL Gene Symbol=COMTL6;CGSNL Gene Name=CAFFEIC ACID 3-O-METHYLTRANSFERASE LIKE 6;Oryzabase Gene Symbol Synonym(s)=OsCOMTL6;Note=Winged helix repressor DNA-binding domain containing protein.;Transcript_evidence=AK104764 (DDBJ%2C Best hit),AK061551 (DDBJ%2C Best hit);ORF_evidence=Q96565 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: O-methyltransferase activity (GO:0008171),Molecular Function: protein dimerization activity (GO:0046983);InterPro=O-methyltransferase%2C family 2 (IPR001077),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Plant methyltransferase dimerisation (IPR012967),O-methyltransferase%2C COMT%2C eukaryota (IPR016461);NIAS_FLcDNA=001-038-H07,006-311-B07;Oryzabase=10446;Expression=AK104764;TENOR=Os04t0175900-01;KEGG=Os04t0175900-01
Chr04	irgsp1_rep	five_prime_UTR	5178491	5178572	.	+	.	Parent=Os04t0175900-01
Chr04	irgsp1_rep	CDS	5178573	5179012	.	+	0	Parent=Os04t0175900-01
Chr04	irgsp1_rep	CDS	5180242	5180555	.	+	1	Parent=Os04t0175900-01
Chr04	irgsp1_rep	CDS	5185540	5185604	.	+	2	Parent=Os04t0175900-01
Chr04	irgsp1_rep	CDS	5185988	5186284	.	+	0	Parent=Os04t0175900-01
Chr04	irgsp1_rep	three_prime_UTR	5186285	5186485	.	+	.	Parent=Os04t0175900-01
Chr04	irgsp1_rep	mRNA	5189974	5194492	.	-	.	ID=Os04t0176200-00;Name=Os04t0176200-00;Locus_id=Os04g0176200;Note=Similar to N-methyltransferase.;Transcript_evidence=ab initio prediction;ORF_evidence=Q96565 (UniProt);GO=Molecular Function: O-methyltransferase activity (GO:0008171);InterPro=O-methyltransferase%2C family 2 (IPR001077);TENOR=Os04t0176200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	5194150	5194492	.	-	0	Parent=Os04t0176200-00
Chr04	irgsp1_rep	CDS	5190424	5190488	.	-	2	Parent=Os04t0176200-00
Chr04	irgsp1_rep	CDS	5189974	5190273	.	-	0	Parent=Os04t0176200-00
Chr04	irgsp1_rep	mRNA	5210111	5216557	.	+	.	ID=Os04t0176300-00;Name=Os04t0176300-00;Locus_id=Os04g0176300;Note=Hypothetical protein.;Transcript_evidence=tplb0037b22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0176300-00
Chr04	irgsp1_rep	five_prime_UTR	5210111	5210244	.	+	.	Parent=Os04t0176300-00
Chr04	irgsp1_rep	five_prime_UTR	5211295	5211461	.	+	.	Parent=Os04t0176300-00
Chr04	irgsp1_rep	five_prime_UTR	5211865	5212015	.	+	.	Parent=Os04t0176300-00
Chr04	irgsp1_rep	five_prime_UTR	5212160	5212325	.	+	.	Parent=Os04t0176300-00
Chr04	irgsp1_rep	five_prime_UTR	5212750	5212906	.	+	.	Parent=Os04t0176300-00
Chr04	irgsp1_rep	five_prime_UTR	5213377	5213517	.	+	.	Parent=Os04t0176300-00
Chr04	irgsp1_rep	five_prime_UTR	5213654	5213757	.	+	.	Parent=Os04t0176300-00
Chr04	irgsp1_rep	five_prime_UTR	5213974	5214032	.	+	.	Parent=Os04t0176300-00
Chr04	irgsp1_rep	CDS	5214033	5214054	.	+	0	Parent=Os04t0176300-00
Chr04	irgsp1_rep	CDS	5215111	5215245	.	+	2	Parent=Os04t0176300-00
Chr04	irgsp1_rep	CDS	5216365	5216522	.	+	2	Parent=Os04t0176300-00
Chr04	irgsp1_rep	three_prime_UTR	5216523	5216557	.	+	.	Parent=Os04t0176300-00
Chr04	irgsp1_rep	mRNA	5210122	5216551	.	-	.	ID=Os04t0176400-00;Name=Os04t0176400-00;Locus_id=Os04g0176400;CGSNL Gene Symbol=SCP22;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 22;Oryzabase Gene Symbol Synonym(s)=OsSCP22;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 22;Note=Similar to serine carboxypeptidase 1.;Transcript_evidence=AK252954 (DDBJ);ORF_evidence=NP_001151152.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);Oryzabase=19205;TENOR=Os04t0176400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	5216535	5216551	.	-	.	Parent=Os04t0176400-00
Chr04	irgsp1_rep	CDS	5216368	5216534	.	-	0	Parent=Os04t0176400-00
Chr04	irgsp1_rep	CDS	5215112	5215248	.	-	1	Parent=Os04t0176400-00
Chr04	irgsp1_rep	CDS	5213979	5214055	.	-	2	Parent=Os04t0176400-00
Chr04	irgsp1_rep	CDS	5213640	5213762	.	-	0	Parent=Os04t0176400-00
Chr04	irgsp1_rep	CDS	5213402	5213504	.	-	0	Parent=Os04t0176400-00
Chr04	irgsp1_rep	CDS	5213245	5213282	.	-	2	Parent=Os04t0176400-00
Chr04	irgsp1_rep	CDS	5212795	5212896	.	-	0	Parent=Os04t0176400-00
Chr04	irgsp1_rep	CDS	5212433	5212513	.	-	0	Parent=Os04t0176400-00
Chr04	irgsp1_rep	CDS	5212150	5212290	.	-	0	Parent=Os04t0176400-00
Chr04	irgsp1_rep	CDS	5211935	5212006	.	-	0	Parent=Os04t0176400-00
Chr04	irgsp1_rep	CDS	5211740	5211858	.	-	0	Parent=Os04t0176400-00
Chr04	irgsp1_rep	CDS	5211317	5211430	.	-	1	Parent=Os04t0176400-00
Chr04	irgsp1_rep	CDS	5210331	5210376	.	-	1	Parent=Os04t0176400-00
Chr04	irgsp1_rep	CDS	5210135	5210218	.	-	0	Parent=Os04t0176400-00
Chr04	irgsp1_rep	three_prime_UTR	5210122	5210134	.	-	.	Parent=Os04t0176400-00
Chr04	irgsp1_rep	mRNA	5241446	5242569	.	-	.	ID=Os04t0177000-00;Name=Os04t0177000-00;Locus_id=Os04g0177000;CGSNL Gene Symbol=RLCK132;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 132;Oryzabase Gene Symbol Synonym(s)=OsRLCK132;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 132;Note=Similar to Stress-induced receptor-like kinase 2.;Transcript_evidence=EU956894 (DDBJ);ORF_evidence=A5JS88 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18838;TENOR=Os04t0177000-00
Chr04	irgsp1_rep	CDS	5241472	5242569	.	-	0	Parent=Os04t0177000-00
Chr04	irgsp1_rep	three_prime_UTR	5241446	5241471	.	-	.	Parent=Os04t0177000-00
Chr04	irgsp1_rep	mRNA	5246846	5247861	.	-	.	ID=Os04t0177100-00;Name=Os04t0177100-00;Locus_id=Os04g0177100;Note=Gnk2-homologous domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001052167.1 (RefSeq);InterPro=Gnk2-homologous domain (IPR002902);TENOR=Os04t0177100-00
Chr04	irgsp1_rep	CDS	5247182	5247861	.	-	0	Parent=Os04t0177100-00
Chr04	irgsp1_rep	CDS	5246846	5247002	.	-	1	Parent=Os04t0177100-00
Chr04	irgsp1_rep	mRNA	5254429	5260631	.	-	.	ID=Os04t0177300-01;Name=Os04t0177300-01;Locus_id=Os04g0177300;Oryzabase Gene Name Synonym(s)=DEAD-like helicase N-terminal domain-containing protein;Note=HIP116%2C Rad5p N-terminal domain containing protein.;Transcript_evidence=AK102094 (DDBJ%2C Best hit);ORF_evidence=Q7XNH0 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides (GO:0016818);InterPro=HIP116%2C Rad5p N-terminal (IPR014905),Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (IPR015940);NIAS_FLcDNA=J033083D05;Oryzabase=22049;TENOR=Os04t0177300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	5260535	5260631	.	-	.	Parent=Os04t0177300-01
Chr04	irgsp1_rep	CDS	5259617	5260534	.	-	0	Parent=Os04t0177300-01
Chr04	irgsp1_rep	CDS	5259372	5259505	.	-	0	Parent=Os04t0177300-01
Chr04	irgsp1_rep	CDS	5259115	5259253	.	-	1	Parent=Os04t0177300-01
Chr04	irgsp1_rep	CDS	5258969	5259022	.	-	0	Parent=Os04t0177300-01
Chr04	irgsp1_rep	CDS	5258555	5258713	.	-	0	Parent=Os04t0177300-01
Chr04	irgsp1_rep	CDS	5258424	5258453	.	-	0	Parent=Os04t0177300-01
Chr04	irgsp1_rep	three_prime_UTR	5258309	5258423	.	-	.	Parent=Os04t0177300-01
Chr04	irgsp1_rep	three_prime_UTR	5258127	5258211	.	-	.	Parent=Os04t0177300-01
Chr04	irgsp1_rep	three_prime_UTR	5257514	5257705	.	-	.	Parent=Os04t0177300-01
Chr04	irgsp1_rep	three_prime_UTR	5257132	5257275	.	-	.	Parent=Os04t0177300-01
Chr04	irgsp1_rep	three_prime_UTR	5256878	5257027	.	-	.	Parent=Os04t0177300-01
Chr04	irgsp1_rep	three_prime_UTR	5256685	5256752	.	-	.	Parent=Os04t0177300-01
Chr04	irgsp1_rep	three_prime_UTR	5256476	5256598	.	-	.	Parent=Os04t0177300-01
Chr04	irgsp1_rep	three_prime_UTR	5256259	5256358	.	-	.	Parent=Os04t0177300-01
Chr04	irgsp1_rep	three_prime_UTR	5255992	5256104	.	-	.	Parent=Os04t0177300-01
Chr04	irgsp1_rep	three_prime_UTR	5255335	5255908	.	-	.	Parent=Os04t0177300-01
Chr04	irgsp1_rep	three_prime_UTR	5255163	5255234	.	-	.	Parent=Os04t0177300-01
Chr04	irgsp1_rep	three_prime_UTR	5254954	5255052	.	-	.	Parent=Os04t0177300-01
Chr04	irgsp1_rep	three_prime_UTR	5254429	5254863	.	-	.	Parent=Os04t0177300-01
Chr04	irgsp1_rep	mRNA	5263669	5266752	.	-	.	ID=Os04t0177400-01;Name=Os04t0177400-01;Locus_id=Os04g0177400;Note=Similar to Riboflavin biosynthesis protein ribD.;Transcript_evidence=AK063474 (DDBJ%2C Best hit);ORF_evidence=B6TRH4 (UniProt);GO=Biological Process: riboflavin biosynthetic process (GO:0009231),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity (GO:0008835),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: hydrolase activity (GO:0016787);InterPro=CMP/dCMP deaminase%2C zinc-binding (IPR002125),Riboflavin biosynthesis protein RibD (IPR004794),APOBEC/CMP deaminase%2C zinc-binding (IPR016192),Cytidine deaminase-like (IPR016193),Dihydrofolate reductase-like domain (IPR024072);NIAS_FLcDNA=001-116-A11;TENOR=Os04t0177400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	5266731	5266752	.	-	.	Parent=Os04t0177400-01
Chr04	irgsp1_rep	CDS	5266326	5266730	.	-	0	Parent=Os04t0177400-01
Chr04	irgsp1_rep	CDS	5265604	5265905	.	-	0	Parent=Os04t0177400-01
Chr04	irgsp1_rep	CDS	5264769	5265276	.	-	1	Parent=Os04t0177400-01
Chr04	irgsp1_rep	three_prime_UTR	5263669	5264768	.	-	.	Parent=Os04t0177400-01
Chr04	irgsp1_rep	mRNA	5289227	5289454	.	+	.	ID=Os04t0177500-00;Name=Os04t0177500-00;Locus_id=Os04g0177500;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=XP_002442912.1 (RefSeq);TENOR=Os04t0177500-00
Chr04	irgsp1_rep	CDS	5289227	5289454	.	+	0	Parent=Os04t0177500-00
Chr04	irgsp1_rep	mRNA	5293743	5306508	.	-	.	ID=Os04t0177600-01;Name=Os04t0177600-01;Locus_id=Os04g0177600;Note=Similar to Actin-related protein 9.;Transcript_evidence=AK109896 (DDBJ%2C Best hit);ORF_evidence=Q0JF03 (UniProt);InterPro=Actin-like (IPR004000);NIAS_FLcDNA=002-149-F02;Expression=AK109896;TENOR=Os04t0177600-01;KEGG=Os04t0177600-01
Chr04	irgsp1_rep	five_prime_UTR	5306405	5306508	.	-	.	Parent=Os04t0177600-01
Chr04	irgsp1_rep	CDS	5306402	5306404	.	-	0	Parent=Os04t0177600-01
Chr04	irgsp1_rep	CDS	5306209	5306281	.	-	0	Parent=Os04t0177600-01
Chr04	irgsp1_rep	CDS	5305724	5305845	.	-	2	Parent=Os04t0177600-01
Chr04	irgsp1_rep	CDS	5305584	5305643	.	-	0	Parent=Os04t0177600-01
Chr04	irgsp1_rep	CDS	5305436	5305507	.	-	0	Parent=Os04t0177600-01
Chr04	irgsp1_rep	CDS	5304135	5304237	.	-	0	Parent=Os04t0177600-01
Chr04	irgsp1_rep	CDS	5303070	5303275	.	-	2	Parent=Os04t0177600-01
Chr04	irgsp1_rep	CDS	5301299	5301419	.	-	0	Parent=Os04t0177600-01
Chr04	irgsp1_rep	CDS	5300278	5300342	.	-	2	Parent=Os04t0177600-01
Chr04	irgsp1_rep	CDS	5299032	5299121	.	-	0	Parent=Os04t0177600-01
Chr04	irgsp1_rep	CDS	5298837	5298887	.	-	0	Parent=Os04t0177600-01
Chr04	irgsp1_rep	CDS	5297784	5297915	.	-	0	Parent=Os04t0177600-01
Chr04	irgsp1_rep	CDS	5297053	5297142	.	-	0	Parent=Os04t0177600-01
Chr04	irgsp1_rep	CDS	5296808	5296878	.	-	0	Parent=Os04t0177600-01
Chr04	irgsp1_rep	CDS	5296552	5296727	.	-	1	Parent=Os04t0177600-01
Chr04	irgsp1_rep	CDS	5296436	5296479	.	-	2	Parent=Os04t0177600-01
Chr04	irgsp1_rep	CDS	5296301	5296350	.	-	0	Parent=Os04t0177600-01
Chr04	irgsp1_rep	CDS	5296181	5296226	.	-	1	Parent=Os04t0177600-01
Chr04	irgsp1_rep	CDS	5295874	5295924	.	-	0	Parent=Os04t0177600-01
Chr04	irgsp1_rep	CDS	5294886	5295029	.	-	0	Parent=Os04t0177600-01
Chr04	irgsp1_rep	three_prime_UTR	5294883	5294885	.	-	.	Parent=Os04t0177600-01
Chr04	irgsp1_rep	three_prime_UTR	5293743	5294049	.	-	.	Parent=Os04t0177600-01
Chr04	irgsp1_rep	mRNA	5291177	5306497	.	-	.	ID=Os04t0177600-02;Name=Os04t0177600-02;Locus_id=Os04g0177600;Note=Actin/actin-like family protein.;Transcript_evidence=AK105285 (DDBJ%2C Best hit);ORF_evidence=Q0JF03 (UniProt);InterPro=Actin-like (IPR004000);NIAS_FLcDNA=001-116-E06;Expression=AK105285;TENOR=Os04t0177600-02;KEGG=Os04t0177600-02
Chr04	irgsp1_rep	five_prime_UTR	5306405	5306497	.	-	.	Parent=Os04t0177600-02
Chr04	irgsp1_rep	CDS	5306402	5306404	.	-	0	Parent=Os04t0177600-02
Chr04	irgsp1_rep	CDS	5306209	5306281	.	-	0	Parent=Os04t0177600-02
Chr04	irgsp1_rep	CDS	5305724	5305845	.	-	2	Parent=Os04t0177600-02
Chr04	irgsp1_rep	CDS	5305584	5305643	.	-	0	Parent=Os04t0177600-02
Chr04	irgsp1_rep	CDS	5305436	5305507	.	-	0	Parent=Os04t0177600-02
Chr04	irgsp1_rep	CDS	5304135	5304237	.	-	0	Parent=Os04t0177600-02
Chr04	irgsp1_rep	CDS	5303070	5303266	.	-	2	Parent=Os04t0177600-02
Chr04	irgsp1_rep	CDS	5301299	5301419	.	-	0	Parent=Os04t0177600-02
Chr04	irgsp1_rep	CDS	5300278	5300342	.	-	2	Parent=Os04t0177600-02
Chr04	irgsp1_rep	CDS	5299032	5299121	.	-	0	Parent=Os04t0177600-02
Chr04	irgsp1_rep	CDS	5298837	5298887	.	-	0	Parent=Os04t0177600-02
Chr04	irgsp1_rep	CDS	5297784	5297915	.	-	0	Parent=Os04t0177600-02
Chr04	irgsp1_rep	CDS	5297053	5297142	.	-	0	Parent=Os04t0177600-02
Chr04	irgsp1_rep	CDS	5296808	5296878	.	-	0	Parent=Os04t0177600-02
Chr04	irgsp1_rep	CDS	5296552	5296727	.	-	1	Parent=Os04t0177600-02
Chr04	irgsp1_rep	CDS	5296436	5296479	.	-	2	Parent=Os04t0177600-02
Chr04	irgsp1_rep	CDS	5296301	5296350	.	-	0	Parent=Os04t0177600-02
Chr04	irgsp1_rep	CDS	5296181	5296226	.	-	1	Parent=Os04t0177600-02
Chr04	irgsp1_rep	CDS	5295874	5295924	.	-	0	Parent=Os04t0177600-02
Chr04	irgsp1_rep	CDS	5294886	5295029	.	-	0	Parent=Os04t0177600-02
Chr04	irgsp1_rep	three_prime_UTR	5294883	5294885	.	-	.	Parent=Os04t0177600-02
Chr04	irgsp1_rep	three_prime_UTR	5291177	5291456	.	-	.	Parent=Os04t0177600-02
Chr04	irgsp1_rep	mRNA	5318070	5326425	.	+	.	ID=Os04t0178300-01;Name=Os04t0178300-01;Locus_id=Os04g0178300;CGSNL Gene Symbol=CPS4;CGSNL Gene Name=ENT-COPALYL DIPHOSPHATE SYNTHASE 4;Oryzabase Gene Symbol Synonym(s)=OsCPS4%2C CYC1%2C OsCYC1%2C OsCyc1%2C cpsl3%2C OsCPSL3%2C OsCPSsyn%2C OsCyc1/OsCPS4%2C OsTPS15%2C Os-CPS4;Oryzabase Gene Name Synonym(s)=rice ent-copalyl diphosphate (CDP) synthase4%2C ent-copalyl diphosphate synthase 4%2C ent-copalyl diphosphate synthase like 3%2C syn-copalyl diphosphate synthase%2C syn-copalyl diphosphate synthase%2C cyclase1%2C cyclase 1%2C syn-CDP synthase%2C terpene synthase 15;Note=Similar to Isoform 3 of Syn-copalyl diphosphate synthase.;Transcript_evidence=AK121319 (DDBJ%2C Best hit);ORF_evidence=Q0JF02-3 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: lyase activity (GO:0016829);InterPro=Terpene synthase-like (IPR001906),Terpene synthase%2C metal-binding domain (IPR005630),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930);NIAS_FLcDNA=J023113P09;Oryzabase=3130;Expression=AK121319;TENOR=Os04t0178300-01;KEGG=Os04t0178300-01 (EC:5.5.1.13)
Chr04	irgsp1_rep	five_prime_UTR	5318070	5318172	.	+	.	Parent=Os04t0178300-01
Chr04	irgsp1_rep	CDS	5318173	5318305	.	+	0	Parent=Os04t0178300-01
Chr04	irgsp1_rep	CDS	5321840	5321960	.	+	2	Parent=Os04t0178300-01
Chr04	irgsp1_rep	CDS	5322086	5322198	.	+	1	Parent=Os04t0178300-01
Chr04	irgsp1_rep	CDS	5323047	5323279	.	+	2	Parent=Os04t0178300-01
Chr04	irgsp1_rep	CDS	5323941	5324056	.	+	0	Parent=Os04t0178300-01
Chr04	irgsp1_rep	CDS	5324173	5324271	.	+	1	Parent=Os04t0178300-01
Chr04	irgsp1_rep	CDS	5324736	5324915	.	+	1	Parent=Os04t0178300-01
Chr04	irgsp1_rep	CDS	5325040	5325127	.	+	1	Parent=Os04t0178300-01
Chr04	irgsp1_rep	CDS	5325223	5325432	.	+	0	Parent=Os04t0178300-01
Chr04	irgsp1_rep	CDS	5325823	5326044	.	+	0	Parent=Os04t0178300-01
Chr04	irgsp1_rep	three_prime_UTR	5326045	5326425	.	+	.	Parent=Os04t0178300-01
Chr04	irgsp1_rep	mRNA	5318347	5326199	.	+	.	ID=Os04t0178300-02;Name=Os04t0178300-02;Locus_id=Os04g0178300;CGSNL Gene Symbol=CPS4;CGSNL Gene Name=ENT-COPALYL DIPHOSPHATE SYNTHASE 4;Oryzabase Gene Symbol Synonym(s)=OsCPS4%2C CYC1%2C OsCYC1%2C OsCyc1%2C cpsl3%2C OsCPSL3%2C OsCPSsyn%2C OsCyc1/OsCPS4%2C OsTPS15%2C Os-CPS4;Oryzabase Gene Name Synonym(s)=rice ent-copalyl diphosphate (CDP) synthase4%2C ent-copalyl diphosphate synthase 4%2C ent-copalyl diphosphate synthase like 3%2C syn-copalyl diphosphate synthase%2C syn-copalyl diphosphate synthase%2C cyclase1%2C cyclase 1%2C syn-CDP synthase%2C terpene synthase 15;Note=Similar to Syn-copalyl diphosphate synthase.;Transcript_evidence=AK100631 (DDBJ%2C Best hit);ORF_evidence=Q0JF02-2;GO=Biological Process: metabolic process (GO:0008152),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: lyase activity (GO:0016829);InterPro=Terpene synthase-like (IPR001906),Terpene synthase%2C metal-binding domain (IPR005630),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930);NIAS_FLcDNA=J023109E08;Manual Curation=June 20%2C 2018;Oryzabase=3130;Expression=AK100631;TENOR=Os04t0178300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	5318347	5318793	.	+	.	Parent=Os04t0178300-02
Chr04	irgsp1_rep	CDS	5318794	5318874	.	+	0	Parent=Os04t0178300-02
Chr04	irgsp1_rep	CDS	5319027	5319330	.	+	0	Parent=Os04t0178300-02
Chr04	irgsp1_rep	CDS	5320220	5320403	.	+	2	Parent=Os04t0178300-02
Chr04	irgsp1_rep	CDS	5321025	5321239	.	+	1	Parent=Os04t0178300-02
Chr04	irgsp1_rep	CDS	5321840	5321960	.	+	2	Parent=Os04t0178300-02
Chr04	irgsp1_rep	CDS	5322086	5322198	.	+	1	Parent=Os04t0178300-02
Chr04	irgsp1_rep	CDS	5323047	5323279	.	+	2	Parent=Os04t0178300-02
Chr04	irgsp1_rep	CDS	5323941	5324056	.	+	0	Parent=Os04t0178300-02
Chr04	irgsp1_rep	CDS	5324173	5324271	.	+	1	Parent=Os04t0178300-02
Chr04	irgsp1_rep	CDS	5324736	5324915	.	+	1	Parent=Os04t0178300-02
Chr04	irgsp1_rep	CDS	5325040	5325127	.	+	1	Parent=Os04t0178300-02
Chr04	irgsp1_rep	CDS	5325223	5325432	.	+	0	Parent=Os04t0178300-02
Chr04	irgsp1_rep	CDS	5325823	5326044	.	+	0	Parent=Os04t0178300-02
Chr04	irgsp1_rep	three_prime_UTR	5326045	5326199	.	+	.	Parent=Os04t0178300-02
Chr04	irgsp1_rep	mRNA	5318060	5326233	.	+	.	ID=Os04t0178300-03;Name=Os04t0178300-03;Locus_id=Os04g0178300;RAP-DB Gene Symbol Synonym(s)=OsCPS4%2C Os-CPS4%2C OsCyc1%2C OsCPSsyn;RAP-DB Gene Name Synonym(s)=syn-CPP synthase%2C syn-copalyl diphosphate synthase%2C syn-CDP synthase;CGSNL Gene Symbol=CPS4;CGSNL Gene Name=ENT-COPALYL DIPHOSPHATE SYNTHASE 4;Oryzabase Gene Symbol Synonym(s)=OsCPS4%2C CYC1%2C OsCYC1%2C OsCyc1%2C cpsl3%2C OsCPSL3%2C OsCPSsyn%2C OsCyc1/OsCPS4%2C OsTPS15%2C Os-CPS4;Oryzabase Gene Name Synonym(s)=rice ent-copalyl diphosphate (CDP) synthase4%2C ent-copalyl diphosphate synthase 4%2C ent-copalyl diphosphate synthase like 3%2C syn-copalyl diphosphate synthase%2C syn-copalyl diphosphate synthase%2C cyclase1%2C cyclase 1%2C syn-CDP synthase%2C terpene synthase 15;Note=Syn-copalyl diphosphate synthase%2C Fungal non-host disease resistance;Transcript_evidence=AB066270,AY530101 (IR24);ORF_evidence=Q0JF02;GO=Biological Process: metabolic process (GO:0008152),Molecular Function: terpene synthase activity (GO:0010333),Molecular Function: lyase activity (GO:0016829);InterPro=Terpene synthase%2C N-terminal domain superfamily (IPR036965),Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid (IPR008930),Isoprenoid synthase domain superfamily (IPR008949),Terpene synthase%2C N-terminal domain (IPR001906);Manual Curation=June 12%2C 2018;Literature_PMID=29691314,15341631,15255861;Oryzabase=3130
Chr04	irgsp1_rep	five_prime_UTR	5318060	5318172	.	+	.	Parent=Os04t0178300-03
Chr04	irgsp1_rep	CDS	5318173	5318305	.	+	0	Parent=Os04t0178300-03
Chr04	irgsp1_rep	CDS	5318789	5318874	.	+	2	Parent=Os04t0178300-03
Chr04	irgsp1_rep	CDS	5319027	5319330	.	+	0	Parent=Os04t0178300-03
Chr04	irgsp1_rep	CDS	5320220	5320403	.	+	2	Parent=Os04t0178300-03
Chr04	irgsp1_rep	CDS	5321025	5321239	.	+	1	Parent=Os04t0178300-03
Chr04	irgsp1_rep	CDS	5321840	5321960	.	+	2	Parent=Os04t0178300-03
Chr04	irgsp1_rep	CDS	5322086	5322198	.	+	1	Parent=Os04t0178300-03
Chr04	irgsp1_rep	CDS	5323047	5323279	.	+	2	Parent=Os04t0178300-03
Chr04	irgsp1_rep	CDS	5323941	5324056	.	+	0	Parent=Os04t0178300-03
Chr04	irgsp1_rep	CDS	5324173	5324271	.	+	1	Parent=Os04t0178300-03
Chr04	irgsp1_rep	CDS	5324736	5324915	.	+	1	Parent=Os04t0178300-03
Chr04	irgsp1_rep	CDS	5325040	5325127	.	+	1	Parent=Os04t0178300-03
Chr04	irgsp1_rep	CDS	5325223	5325432	.	+	0	Parent=Os04t0178300-03
Chr04	irgsp1_rep	CDS	5325823	5326044	.	+	0	Parent=Os04t0178300-03
Chr04	irgsp1_rep	three_prime_UTR	5326045	5326233	.	+	.	Parent=Os04t0178300-03
Chr04	irgsp1_rep	mRNA	5332365	5334476	.	-	.	ID=Os04t0178400-01;Name=Os04t0178400-01;Locus_id=Os04g0178400;RAP-DB Gene Symbol Synonym(s)=CYP99A3;RAP-DB Gene Name Synonym(s)=cytoChrome P450 99A3;CGSNL Gene Symbol=CYP99A3;CGSNL Gene Name=P-450 99A3;Oryzabase Gene Name Synonym(s)=CytoChrome P450 99A3;Note=CytoChrome P450 (CYP) mono-oxygenase%2C Multifunctional diterpene oxidase%2C Momilactone biosynthesis;Transcript_evidence=AK071864;ORF_evidence=Q0JF01;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 superfamily (IPR036396),CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J023124B03;Manual Curation=September 28%2C 2020;Literature_PMID=21175892;Oryzabase=7172;Expression=AK071864;TENOR=Os04t0178400-01;KEGG=Os04t0178400-01 (EC:1.14.14.111)
Chr04	irgsp1_rep	five_prime_UTR	5334407	5334476	.	-	.	Parent=Os04t0178400-01
Chr04	irgsp1_rep	CDS	5333528	5334406	.	-	0	Parent=Os04t0178400-01
Chr04	irgsp1_rep	CDS	5332565	5333194	.	-	0	Parent=Os04t0178400-01
Chr04	irgsp1_rep	three_prime_UTR	5332365	5332564	.	-	.	Parent=Os04t0178400-01
Chr04	irgsp1_rep	mRNA	5380120	5380605	.	-	.	ID=Os04t0179100-01;Name=Os04t0179100-01;Locus_id=Os04g0179100;Oryzabase Gene Symbol Synonym(s)=OsSDR110C-MS2%2C SDR110C-MS2%2C OsMAS1%2C MAS1;Oryzabase Gene Name Synonym(s)=short-chain alcohol dehydrogenase/reductase 110C-MS2%2C OsSDR110C family member MS2%2C momilactone A synthase 1;Note=Similar to OSIGBa0109M01.2 protein.;Transcript_evidence=AK240900 (DDBJ%2C Best hit);ORF_evidence=Q01M91 (UniProt);GO=Biological Process: enterobactin biosynthetic process (GO:0009239),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: 2%2C3-dihydro-2%2C3-dihydroxybenzoate dehydrogenase activity (GO:0008667);InterPro=2%2C3-dihydro-2%2C3-dihydroxybenzoate dehydrogenase (IPR003560),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J065033H22;Oryzabase=21338;TENOR=Os04t0179100-01;KEGG=Os04t0179100-01 (EC:1.1.1.288)
Chr04	irgsp1_rep	five_prime_UTR	5380605	5380605	.	-	.	Parent=Os04t0179100-01
Chr04	irgsp1_rep	CDS	5380308	5380604	.	-	0	Parent=Os04t0179100-01
Chr04	irgsp1_rep	three_prime_UTR	5380120	5380307	.	-	.	Parent=Os04t0179100-01
Chr04	irgsp1_rep	mRNA	5385722	5387215	.	-	.	ID=Os04t0179200-01;Name=Os04t0179200-01;Locus_id=Os04g0179200;CGSNL Gene Symbol=MAS;CGSNL Gene Name=MOMILACTONE A SYNTHASE;Oryzabase Gene Symbol Synonym(s)=OsMAS%2C MAS1%2C OsMAS1%2C OsMAS/SDR110C-MS1%2C SDR110C-MS1;Oryzabase Gene Name Synonym(s)=Momilactone A synthase 1%2C Momilactone A synthase;Note=Similar to Stem secoisolariciresinol dehydrogenase (Fragment).;Transcript_evidence=AK103462 (DDBJ%2C Best hit),AK106087 (DDBJ%2C Best hit),AK120852 (DDBJ%2C Best hit);ORF_evidence=Q01M90 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);NIAS_FLcDNA=J033129M10,001-207-B04,J023023N20;Oryzabase=7170;Expression=AK103462;TENOR=Os04t0179200-01;KEGG=Os04t0179200-01
Chr04	irgsp1_rep	five_prime_UTR	5387130	5387215	.	-	.	Parent=Os04t0179200-01
Chr04	irgsp1_rep	CDS	5387089	5387129	.	-	0	Parent=Os04t0179200-01
Chr04	irgsp1_rep	CDS	5386075	5386858	.	-	1	Parent=Os04t0179200-01
Chr04	irgsp1_rep	three_prime_UTR	5385722	5386074	.	-	.	Parent=Os04t0179200-01
Chr04	irgsp1_rep	mRNA	5428347	5434023	.	-	.	ID=Os04t0179700-01;Name=Os04t0179700-01;Locus_id=Os04g0179700;RAP-DB Gene Symbol Synonym(s)=OsKS4%2C OsKSL4%2C OsDTS2;RAP-DB Gene Name Synonym(s)=Ent-kaurene synthase 4%2C Ent-kaurene synthase-like 4%2C "9-beta-pimara-7%2C15-diene synthase"%2C "Syn-pimara-7%2C15-diene synthase";CGSNL Gene Symbol=KS4;CGSNL Gene Name=ENT-KAURENE SYNTHASE 4;Oryzabase Gene Symbol Synonym(s)=OsKS4%2C KS4%2C KSL4%2C OsKSL4%2C DTS2%2C OsDTS2%2C OsTPS16%2C TPS16;Oryzabase Gene Name Synonym(s)=rice ent-kaurene synthase4%2C Ent-kaurene synthase 4%2C Ent-kaurene synthase-like 4%2C Ent-kaurene synthase like-4%2C "Syn-pimara-7%2C 15-diene synthase"%2C "9-beta-pimara-7%2C 15-diene synthase"%2C syn-pimara-7 15-diene synthase%2C syn Pimaradiene synthase%2C KAURENE SYNTHASE-LIKE 4%2C terpene synthase 16;Note=9-beta-pimara-7%2C15-diene synthase%2C Momilactone phytoalexins biosynthesis%2C Defense response;Transcript_evidence=AK119327;ORF_evidence=Q0JEZ8;GO=Biological Process: metabolic process (GO:0008152),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: terpene synthase activity (GO:0010333),Molecular Function: lyase activity (GO:0016829);InterPro=Terpene synthase%2C N-terminal domain superfamily (IPR036965),Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid (IPR008930),Isoprenoid synthase domain superfamily (IPR008949),Terpene synthase%2C N-terminal domain (IPR001906),Terpene synthase%2C metal-binding domain (IPR005630);NIAS_FLcDNA=001-131-B02;Manual Curation=June 20%2C 2018;Literature_PMID=28857222,23621683,15388982,15299118;Oryzabase=3134;Expression=AK119327;TENOR=Os04t0179700-01;KEGG=Os04t0179700-01 (EC:4.2.3.35)
Chr04	irgsp1_rep	five_prime_UTR	5433965	5434023	.	-	.	Parent=Os04t0179700-01
Chr04	irgsp1_rep	CDS	5433724	5433964	.	-	0	Parent=Os04t0179700-01
Chr04	irgsp1_rep	CDS	5432505	5432554	.	-	2	Parent=Os04t0179700-01
Chr04	irgsp1_rep	CDS	5432065	5432347	.	-	0	Parent=Os04t0179700-01
Chr04	irgsp1_rep	CDS	5431784	5431964	.	-	2	Parent=Os04t0179700-01
Chr04	irgsp1_rep	CDS	5431179	5431399	.	-	1	Parent=Os04t0179700-01
Chr04	irgsp1_rep	CDS	5430974	5431094	.	-	2	Parent=Os04t0179700-01
Chr04	irgsp1_rep	CDS	5430804	5430901	.	-	1	Parent=Os04t0179700-01
Chr04	irgsp1_rep	CDS	5430504	5430718	.	-	2	Parent=Os04t0179700-01
Chr04	irgsp1_rep	CDS	5430312	5430424	.	-	0	Parent=Os04t0179700-01
Chr04	irgsp1_rep	CDS	5430140	5430235	.	-	1	Parent=Os04t0179700-01
Chr04	irgsp1_rep	CDS	5429837	5430052	.	-	1	Parent=Os04t0179700-01
Chr04	irgsp1_rep	CDS	5429601	5429742	.	-	1	Parent=Os04t0179700-01
Chr04	irgsp1_rep	CDS	5429133	5429378	.	-	0	Parent=Os04t0179700-01
Chr04	irgsp1_rep	CDS	5428513	5428818	.	-	0	Parent=Os04t0179700-01
Chr04	irgsp1_rep	three_prime_UTR	5428347	5428512	.	-	.	Parent=Os04t0179700-01
Chr04	irgsp1_rep	mRNA	5483444	5484258	.	-	.	ID=Os04t0180300-01;Name=Os04t0180300-01;Locus_id=Os04g0180300;Note=Similar to OSIGBa0105N24.3 protein.;Transcript_evidence=AK111372 (DDBJ%2C Best hit);ORF_evidence=Q01MJ6 (UniProt);NIAS_FLcDNA=002-182-A07;Expression=AK111372;TENOR=Os04t0180300-01;KEGG=Os04t0180300-01
Chr04	irgsp1_rep	five_prime_UTR	5484178	5484258	.	-	.	Parent=Os04t0180300-01
Chr04	irgsp1_rep	CDS	5483857	5484177	.	-	0	Parent=Os04t0180300-01
Chr04	irgsp1_rep	three_prime_UTR	5483444	5483856	.	-	.	Parent=Os04t0180300-01
Chr04	irgsp1_rep	mRNA	5484865	5486703	.	+	.	ID=Os04t0180400-01;Name=Os04t0180400-01;Locus_id=Os04g0180400;CGSNL Gene Symbol=CYP99A2;CGSNL Gene Name=P-450 99A2;Oryzabase Gene Symbol Synonym(s)=CYP99A2;Oryzabase Gene Name Synonym(s)=CytoChrome P450 99A2;Note=Similar to CytoChrome P450 99A2.;Transcript_evidence=AK071546 (DDBJ%2C Best hit);ORF_evidence=Q7X7X4 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J023100C12;Oryzabase=7171;TENOR=Os04t0180400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	5484865	5485821	.	+	0	Parent=Os04t0180400-01
Chr04	irgsp1_rep	CDS	5485912	5486541	.	+	0	Parent=Os04t0180400-01
Chr04	irgsp1_rep	three_prime_UTR	5486542	5486703	.	+	.	Parent=Os04t0180400-01
Chr04	irgsp1_rep	mRNA	5485029	5486605	.	-	.	ID=Os04t0180500-00;Name=Os04t0180500-00;Locus_id=Os04g0180500;Note=Hypothetical protein.;Transcript_evidence=tplb0057i02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0180500-00
Chr04	irgsp1_rep	five_prime_UTR	5485941	5486605	.	-	.	Parent=Os04t0180500-00
Chr04	irgsp1_rep	five_prime_UTR	5485726	5485853	.	-	.	Parent=Os04t0180500-00
Chr04	irgsp1_rep	CDS	5485174	5485725	.	-	0	Parent=Os04t0180500-00
Chr04	irgsp1_rep	three_prime_UTR	5485029	5485173	.	-	.	Parent=Os04t0180500-00
Chr04	irgsp1_rep	mRNA	5521913	5522697	.	+	.	ID=Os04t0180900-01;Name=Os04t0180900-01;Locus_id=Os04g0180900;Note=Conserved hypothetical protein.;Transcript_evidence=AK104967 (DDBJ%2C Best hit),AK070109 (DDBJ%2C Best hit);ORF_evidence=B8AR52 (UniProt);NIAS_FLcDNA=001-121-C10,J023044J21;Expression=AK104967;TENOR=Os04t0180900-01;KEGG=Os04t0180900-01
Chr04	irgsp1_rep	five_prime_UTR	5521913	5522077	.	+	.	Parent=Os04t0180900-01
Chr04	irgsp1_rep	CDS	5522078	5522371	.	+	0	Parent=Os04t0180900-01
Chr04	irgsp1_rep	three_prime_UTR	5522372	5522697	.	+	.	Parent=Os04t0180900-01
Chr04	irgsp1_rep	mRNA	5526864	5530223	.	-	.	ID=Os04t0181100-01;Name=Os04t0181100-01;Locus_id=Os04g0181100;Note=HR-like lesion-inducer family protein.;Transcript_evidence=AK241758 (DDBJ%2C Best hit);ORF_evidence=Q01MB3 (UniProt);InterPro=HR-like lesion-inducer (IPR008637);NIAS_FLcDNA=J065204I08;TENOR=Os04t0181100-01;KEGG=Os04t0181100-01
Chr04	irgsp1_rep	five_prime_UTR	5530155	5530223	.	-	.	Parent=Os04t0181100-01
Chr04	irgsp1_rep	CDS	5530087	5530154	.	-	0	Parent=Os04t0181100-01
Chr04	irgsp1_rep	CDS	5528233	5528347	.	-	1	Parent=Os04t0181100-01
Chr04	irgsp1_rep	CDS	5528059	5528148	.	-	0	Parent=Os04t0181100-01
Chr04	irgsp1_rep	CDS	5527332	5527430	.	-	0	Parent=Os04t0181100-01
Chr04	irgsp1_rep	CDS	5527127	5527228	.	-	0	Parent=Os04t0181100-01
Chr04	irgsp1_rep	three_prime_UTR	5526864	5527126	.	-	.	Parent=Os04t0181100-01
Chr04	irgsp1_rep	mRNA	5539574	5545471	.	-	.	ID=Os04t0181300-00;Name=Os04t0181300-00;Locus_id=Os04g0181300;CGSNL Gene Symbol=BZIP35;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 35;Oryzabase Gene Symbol Synonym(s)=OsbZIP35;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 35;Note=Similar to OSIGBa0101K10.2 protein.;Transcript_evidence=AB199586 (DDBJ);ORF_evidence=Q01MB2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),Basic leucine zipper (IPR011700);Oryzabase=10122;TENOR=Os04t0181300-00
Chr04	irgsp1_rep	CDS	5544585	5545471	.	-	0	Parent=Os04t0181300-00
Chr04	irgsp1_rep	CDS	5544349	5544481	.	-	1	Parent=Os04t0181300-00
Chr04	irgsp1_rep	CDS	5544191	5544275	.	-	0	Parent=Os04t0181300-00
Chr04	irgsp1_rep	CDS	5539574	5539749	.	-	2	Parent=Os04t0181300-00
Chr04	irgsp1_rep	mRNA	5560524	5564754	.	+	.	ID=Os04t0181901-00;Name=Os04t0181901-00;Locus_id=Os04g0181901;Note=Hypothetical conserved gene.;Transcript_evidence=AK369735 (DDBJ);ORF_evidence=F2D3Y6 (UniProt);TENOR=Os04t0181901-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	5560524	5560946	.	+	0	Parent=Os04t0181901-00
Chr04	irgsp1_rep	three_prime_UTR	5560947	5561166	.	+	.	Parent=Os04t0181901-00
Chr04	irgsp1_rep	three_prime_UTR	5562035	5562363	.	+	.	Parent=Os04t0181901-00
Chr04	irgsp1_rep	three_prime_UTR	5564395	5564754	.	+	.	Parent=Os04t0181901-00
Chr04	irgsp1_rep	mRNA	5590414	5592679	.	+	.	ID=Os04t0182200-01;Name=Os04t0182200-01;Locus_id=Os04g0182200;CGSNL Gene Symbol=2ODD23;CGSNL Gene Name=2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 23;Oryzabase Gene Symbol Synonym(s)=2-ODD23%2C Os2-ODD23%2C Os2ODD23;Oryzabase Gene Name Synonym(s)=2-oxoglutarate-dependent dioxygenase 23;Note=2OG-Fe(II) oxygenase domain containing protein.;Transcript_evidence=AK067970 (DDBJ%2C Best hit);ORF_evidence=Q01MB0 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=J013124E20;Oryzabase=22625;Expression=AK067970;TENOR=Os04t0182200-01;KEGG=Os04t0182200-01
Chr04	irgsp1_rep	five_prime_UTR	5590414	5590422	.	+	.	Parent=Os04t0182200-01
Chr04	irgsp1_rep	CDS	5590423	5590967	.	+	0	Parent=Os04t0182200-01
Chr04	irgsp1_rep	CDS	5591741	5592062	.	+	1	Parent=Os04t0182200-01
Chr04	irgsp1_rep	CDS	5592170	5592430	.	+	0	Parent=Os04t0182200-01
Chr04	irgsp1_rep	three_prime_UTR	5592431	5592679	.	+	.	Parent=Os04t0182200-01
Chr04	irgsp1_rep	mRNA	5590462	5591999	.	-	.	ID=Os04t0182225-00;Name=Os04t0182225-00;Locus_id=Os04g0182225;Note=Non-protein coding transcript.;Transcript_evidence=AK376085 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0182225-00
Chr04	irgsp1_rep	exon	5591767	5591999	.	-	.	Parent=Os04t0182225-00
Chr04	irgsp1_rep	exon	5590462	5590978	.	-	.	Parent=Os04t0182225-00
Chr04	irgsp1_rep	mRNA	5592612	5596585	.	-	.	ID=Os04t0182250-01;Name=Os04t0182250-01;Locus_id=Os04g0182250;Note=Hypothetical protein.;Transcript_evidence=AK288902 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090080L01;TENOR=Os04t0182250-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	5594404	5596585	.	-	.	Parent=Os04t0182250-01
Chr04	irgsp1_rep	CDS	5594155	5594403	.	-	0	Parent=Os04t0182250-01
Chr04	irgsp1_rep	three_prime_UTR	5592612	5594154	.	-	.	Parent=Os04t0182250-01
Chr04	irgsp1_rep	mRNA	5596791	5599067	.	-	.	ID=Os04t0182300-00;Name=Os04t0182300-00;Locus_id=Os04g0182300;Oryzabase Gene Symbol Synonym(s)=OsSub40%2C SUB40;Oryzabase Gene Name Synonym(s)=Subtilisin 40%2C SUBTILISIN 40;Note=Similar to OSIGBa0101K10.5 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01MA9 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500);Oryzabase=20126;TENOR=Os04t0182300-00;KEGG=Os04t0182300-00
Chr04	irgsp1_rep	CDS	5596791	5599067	.	-	0	Parent=Os04t0182300-00
Chr04	irgsp1_rep	mRNA	5596811	5598844	.	+	.	ID=Os04t0182400-00;Name=Os04t0182400-00;Locus_id=Os04g0182400;Note=Hypothetical protein.;Transcript_evidence=EU955468 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0182400-00
Chr04	irgsp1_rep	five_prime_UTR	5596811	5598219	.	+	.	Parent=Os04t0182400-00
Chr04	irgsp1_rep	CDS	5598220	5598786	.	+	0	Parent=Os04t0182400-00
Chr04	irgsp1_rep	three_prime_UTR	5598787	5598844	.	+	.	Parent=Os04t0182400-00
Chr04	irgsp1_rep	mRNA	5608992	5620616	.	+	.	ID=Os04t0182600-00;Name=Os04t0182600-00;Locus_id=Os04g0182600;Note=Similar to predicted protein.;Transcript_evidence=ab initio prediction;ORF_evidence=XP_002865150.1 (RefSeq);TENOR=Os04t0182600-00;KEGG=Os04t0182600-00
Chr04	irgsp1_rep	CDS	5608992	5609806	.	+	0	Parent=Os04t0182600-00
Chr04	irgsp1_rep	CDS	5610736	5610851	.	+	1	Parent=Os04t0182600-00
Chr04	irgsp1_rep	CDS	5612081	5612157	.	+	2	Parent=Os04t0182600-00
Chr04	irgsp1_rep	CDS	5614835	5614954	.	+	0	Parent=Os04t0182600-00
Chr04	irgsp1_rep	CDS	5616775	5616903	.	+	0	Parent=Os04t0182600-00
Chr04	irgsp1_rep	CDS	5616987	5617112	.	+	0	Parent=Os04t0182600-00
Chr04	irgsp1_rep	CDS	5618104	5618159	.	+	0	Parent=Os04t0182600-00
Chr04	irgsp1_rep	CDS	5618243	5618342	.	+	1	Parent=Os04t0182600-00
Chr04	irgsp1_rep	CDS	5620533	5620616	.	+	0	Parent=Os04t0182600-00
Chr04	irgsp1_rep	mRNA	5621072	5626882	.	+	.	ID=Os04t0182650-00;Name=Os04t0182650-00;Locus_id=Os04g0182650;Note=Similar to predicted protein.;Transcript_evidence=ab initio prediction;ORF_evidence=XP_002865150.1 (RefSeq);TENOR=Os04t0182650-00;KEGG=Os04t0182650-00
Chr04	irgsp1_rep	CDS	5621072	5621385	.	+	0	Parent=Os04t0182650-00
Chr04	irgsp1_rep	CDS	5622253	5622346	.	+	1	Parent=Os04t0182650-00
Chr04	irgsp1_rep	CDS	5623180	5623288	.	+	0	Parent=Os04t0182650-00
Chr04	irgsp1_rep	CDS	5623405	5623673	.	+	2	Parent=Os04t0182650-00
Chr04	irgsp1_rep	CDS	5624312	5624439	.	+	0	Parent=Os04t0182650-00
Chr04	irgsp1_rep	CDS	5625142	5625303	.	+	1	Parent=Os04t0182650-00
Chr04	irgsp1_rep	CDS	5625349	5625376	.	+	1	Parent=Os04t0182650-00
Chr04	irgsp1_rep	CDS	5626017	5626205	.	+	0	Parent=Os04t0182650-00
Chr04	irgsp1_rep	CDS	5626485	5626768	.	+	0	Parent=Os04t0182650-00
Chr04	irgsp1_rep	CDS	5626834	5626882	.	+	1	Parent=Os04t0182650-00
Chr04	irgsp1_rep	mRNA	5629761	5630068	.	+	.	ID=Os04t0182701-01;Name=Os04t0182701-01;Locus_id=Os04g0182701;Note=Non-protein coding transcript.;Transcript_evidence=AK242357 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080020H18;TENOR=Os04t0182701-01
Chr04	irgsp1_rep	exon	5629761	5630068	.	+	.	Parent=Os04t0182701-01
Chr04	irgsp1_rep	mRNA	5636747	5640487	.	-	.	ID=Os04t0182800-01;Name=Os04t0182800-01;Locus_id=Os04g0182800;Oryzabase Gene Name Synonym(s)=Electron transfer flavoprotein subunit;Note=Similar to Electron transfer flavoprotein beta-subunit-like.;Transcript_evidence=AK063110 (DDBJ%2C Best hit);ORF_evidence=Q7F9U3 (UniProt);GO=Molecular Function: electron carrier activity (GO:0009055);InterPro=Electron transfer flavoprotein%2C beta-subunit%2C conserved site (IPR000049),Electron transfer flavoprotein%2C beta subunit (IPR012255),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Electron transfer flavoprotein%2C alpha/beta-subunit%2C N-terminal (IPR014730);NIAS_FLcDNA=001-111-D06;Oryzabase=20362;Expression=AK063110;TENOR=Os04t0182800-01;KEGG=Os04t0182800-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	5640401	5640487	.	-	.	Parent=Os04t0182800-01
Chr04	irgsp1_rep	CDS	5640035	5640400	.	-	0	Parent=Os04t0182800-01
Chr04	irgsp1_rep	CDS	5638457	5638537	.	-	0	Parent=Os04t0182800-01
Chr04	irgsp1_rep	CDS	5637258	5637346	.	-	0	Parent=Os04t0182800-01
Chr04	irgsp1_rep	CDS	5636849	5637074	.	-	1	Parent=Os04t0182800-01
Chr04	irgsp1_rep	three_prime_UTR	5636747	5636848	.	-	.	Parent=Os04t0182800-01
Chr04	irgsp1_rep	mRNA	5644973	5648059	.	-	.	ID=Os04t0182850-00;Name=Os04t0182850-00;Locus_id=Os04g0182850;Note=Hypothetical gene.;Transcript_evidence=AK335244 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0182850-00;KEGG=Os04t0182850-00
Chr04	irgsp1_rep	five_prime_UTR	5647715	5648059	.	-	.	Parent=Os04t0182850-00
Chr04	irgsp1_rep	five_prime_UTR	5645681	5645887	.	-	.	Parent=Os04t0182850-00
Chr04	irgsp1_rep	CDS	5645572	5645680	.	-	0	Parent=Os04t0182850-00
Chr04	irgsp1_rep	CDS	5644973	5645445	.	-	2	Parent=Os04t0182850-00
Chr04	irgsp1_rep	mRNA	5644979	5645554	.	+	.	ID=Os04t0182875-00;Name=Os04t0182875-00;Locus_id=Os04g0182875;Oryzabase Gene Name Synonym(s)=Amidase;Note=Similar to OSIGBa0140C02.3 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01N13 (UniProt);GO=Molecular Function: carbon-nitrogen ligase activity%2C with glutamine as amido-N-donor (GO:0016884);InterPro=Amidase (IPR000120),Amidase signature domain (IPR023631);Oryzabase=18239;TENOR=Os04t0182875-00
Chr04	irgsp1_rep	CDS	5644979	5645554	.	+	0	Parent=Os04t0182875-00
Chr04	irgsp1_rep	mRNA	5645679	5649613	.	+	.	ID=Os04t0182900-00;Name=Os04t0182900-00;Locus_id=Os04g0182900;Oryzabase Gene Name Synonym(s)=Amidase;Note=Similar to OSIGBa0140C02.3 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01N13 (UniProt);GO=Molecular Function: carbon-nitrogen ligase activity%2C with glutamine as amido-N-donor (GO:0016884);InterPro=Amidase (IPR000120),Amidase signature domain (IPR023631);Oryzabase=18239;TENOR=Os04t0182900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	5645679	5645824	.	+	0	Parent=Os04t0182900-00
Chr04	irgsp1_rep	CDS	5647880	5648119	.	+	1	Parent=Os04t0182900-00
Chr04	irgsp1_rep	CDS	5648949	5649147	.	+	1	Parent=Os04t0182900-00
Chr04	irgsp1_rep	CDS	5649257	5649613	.	+	0	Parent=Os04t0182900-00
Chr04	irgsp1_rep	mRNA	5655847	5666499	.	-	.	ID=Os04t0183100-01;Name=Os04t0183100-01;Locus_id=Os04g0183100;Note=7TM GPCR%2C rhodopsin-like domain containing protein.;Transcript_evidence=AK071690 (DDBJ%2C Best hit);ORF_evidence=Q01N12 (UniProt);InterPro=Protein of unknown function DUF2045 (IPR019141);NIAS_FLcDNA=J023114H04;Expression=AK071690;TENOR=Os04t0183100-01;KEGG=Os04t0183100-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	5666369	5666499	.	-	.	Parent=Os04t0183100-01
Chr04	irgsp1_rep	CDS	5666283	5666368	.	-	0	Parent=Os04t0183100-01
Chr04	irgsp1_rep	CDS	5664526	5664718	.	-	1	Parent=Os04t0183100-01
Chr04	irgsp1_rep	CDS	5664363	5664437	.	-	0	Parent=Os04t0183100-01
Chr04	irgsp1_rep	CDS	5663810	5663916	.	-	0	Parent=Os04t0183100-01
Chr04	irgsp1_rep	CDS	5661876	5661933	.	-	1	Parent=Os04t0183100-01
Chr04	irgsp1_rep	CDS	5660147	5660206	.	-	0	Parent=Os04t0183100-01
Chr04	irgsp1_rep	CDS	5660001	5660075	.	-	0	Parent=Os04t0183100-01
Chr04	irgsp1_rep	CDS	5659690	5659839	.	-	0	Parent=Os04t0183100-01
Chr04	irgsp1_rep	CDS	5658865	5658919	.	-	0	Parent=Os04t0183100-01
Chr04	irgsp1_rep	CDS	5658450	5658572	.	-	2	Parent=Os04t0183100-01
Chr04	irgsp1_rep	CDS	5657835	5658046	.	-	2	Parent=Os04t0183100-01
Chr04	irgsp1_rep	CDS	5656234	5656257	.	-	0	Parent=Os04t0183100-01
Chr04	irgsp1_rep	three_prime_UTR	5655847	5656233	.	-	.	Parent=Os04t0183100-01
Chr04	irgsp1_rep	mRNA	5660026	5661825	.	-	.	ID=Os04t0183100-02;Name=Os04t0183100-02;Locus_id=Os04g0183100;Note=Similar to OSIGBa0140C02.4 protein.;Transcript_evidence=AK105704 (DDBJ%2C Best hit);ORF_evidence=Q01N12 (UniProt);NIAS_FLcDNA=001-201-E01;Expression=AK105704;TENOR=Os04t0183100-02;KEGG=Os04t0183100-02
Chr04	irgsp1_rep	five_prime_UTR	5660240	5661825	.	-	.	Parent=Os04t0183100-02
Chr04	irgsp1_rep	CDS	5660147	5660239	.	-	0	Parent=Os04t0183100-02
Chr04	irgsp1_rep	CDS	5660069	5660071	.	-	0	Parent=Os04t0183100-02
Chr04	irgsp1_rep	three_prime_UTR	5660026	5660068	.	-	.	Parent=Os04t0183100-02
Chr04	irgsp1_rep	mRNA	5669190	5673221	.	-	.	ID=Os04t0183201-00;Name=Os04t0183201-00;Locus_id=Os04g0183201;Note=Hypothetical protein.;Transcript_evidence=AK335244 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0183201-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	5672993	5673221	.	-	.	Parent=Os04t0183201-00
Chr04	irgsp1_rep	five_prime_UTR	5671396	5671531	.	-	.	Parent=Os04t0183201-00
Chr04	irgsp1_rep	five_prime_UTR	5670182	5670332	.	-	.	Parent=Os04t0183201-00
Chr04	irgsp1_rep	CDS	5670071	5670181	.	-	0	Parent=Os04t0183201-00
Chr04	irgsp1_rep	CDS	5669190	5669702	.	-	0	Parent=Os04t0183201-00
Chr04	irgsp1_rep	mRNA	5669157	5675737	.	+	.	ID=Os04t0183300-01;Name=Os04t0183300-01;Locus_id=Os04g0183300;Note=Similar to OSIGBa0140C02.5 protein.;Transcript_evidence=AK100045 (DDBJ%2C Best hit);ORF_evidence=Q01N11 (UniProt);GO=Molecular Function: carbon-nitrogen ligase activity%2C with glutamine as amido-N-donor (GO:0016884);InterPro=Amidase (IPR000120),Amidase signature domain (IPR023631);NIAS_FLcDNA=J013153N14;TENOR=Os04t0183300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	5669157	5670140	.	+	.	Parent=Os04t0183300-01
Chr04	irgsp1_rep	CDS	5670141	5670286	.	+	0	Parent=Os04t0183300-01
Chr04	irgsp1_rep	CDS	5673041	5673280	.	+	1	Parent=Os04t0183300-01
Chr04	irgsp1_rep	CDS	5674273	5674471	.	+	1	Parent=Os04t0183300-01
Chr04	irgsp1_rep	CDS	5675115	5675480	.	+	0	Parent=Os04t0183300-01
Chr04	irgsp1_rep	three_prime_UTR	5675481	5675737	.	+	.	Parent=Os04t0183300-01
Chr04	irgsp1_rep	mRNA	5686454	5689200	.	-	.	ID=Os04t0183401-00;Name=Os04t0183401-00;Locus_id=Os04g0183401;Note=Hypothetical protein.;Transcript_evidence=tplb0045c19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0183401-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	5688847	5689200	.	-	.	Parent=Os04t0183401-00
Chr04	irgsp1_rep	five_prime_UTR	5688302	5688534	.	-	.	Parent=Os04t0183401-00
Chr04	irgsp1_rep	five_prime_UTR	5687460	5687654	.	-	.	Parent=Os04t0183401-00
Chr04	irgsp1_rep	CDS	5687417	5687459	.	-	0	Parent=Os04t0183401-00
Chr04	irgsp1_rep	CDS	5687080	5687278	.	-	2	Parent=Os04t0183401-00
Chr04	irgsp1_rep	CDS	5686454	5686991	.	-	1	Parent=Os04t0183401-00
Chr04	irgsp1_rep	mRNA	5686452	5689437	.	+	.	ID=Os04t0183500-01;Name=Os04t0183500-01;Locus_id=Os04g0183500;Note=Similar to OSIGBa0140C02.6 protein.;Transcript_evidence=AK287799 (DDBJ%2C Best hit);ORF_evidence=Q01MY1 (UniProt);GO=Molecular Function: carbon-nitrogen ligase activity%2C with glutamine as amido-N-donor (GO:0016884);InterPro=Amidase (IPR000120),Amidase signature domain (IPR023631);NIAS_FLcDNA=J065175I03;TENOR=Os04t0183500-01;KEGG=Os04t0183500-01
Chr04	irgsp1_rep	five_prime_UTR	5686452	5686486	.	+	.	Parent=Os04t0183500-01
Chr04	irgsp1_rep	CDS	5686487	5686981	.	+	0	Parent=Os04t0183500-01
Chr04	irgsp1_rep	CDS	5687071	5687285	.	+	0	Parent=Os04t0183500-01
Chr04	irgsp1_rep	CDS	5687426	5687668	.	+	1	Parent=Os04t0183500-01
Chr04	irgsp1_rep	CDS	5688320	5688521	.	+	1	Parent=Os04t0183500-01
Chr04	irgsp1_rep	CDS	5688840	5689196	.	+	0	Parent=Os04t0183500-01
Chr04	irgsp1_rep	three_prime_UTR	5689197	5689437	.	+	.	Parent=Os04t0183500-01
Chr04	irgsp1_rep	mRNA	5728101	5731927	.	+	.	ID=Os04t0184100-01;Name=Os04t0184100-01;Locus_id=Os04g0184100;Note=Similar to OSIGBa0140C02.7 protein.;Transcript_evidence=AK102846 (DDBJ%2C Best hit),AK064021 (DDBJ%2C Best hit);ORF_evidence=Q01MY0 (UniProt);GO=Molecular Function: carbon-nitrogen ligase activity%2C with glutamine as amido-N-donor (GO:0016884);InterPro=Amidase (IPR000120),Amidase signature domain (IPR023631);NIAS_FLcDNA=J033110A17,001-125-A03;TENOR=Os04t0184100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	5728101	5728195	.	+	.	Parent=Os04t0184100-01
Chr04	irgsp1_rep	CDS	5728196	5728693	.	+	0	Parent=Os04t0184100-01
Chr04	irgsp1_rep	CDS	5728788	5729002	.	+	0	Parent=Os04t0184100-01
Chr04	irgsp1_rep	CDS	5730160	5730402	.	+	1	Parent=Os04t0184100-01
Chr04	irgsp1_rep	CDS	5730967	5731168	.	+	1	Parent=Os04t0184100-01
Chr04	irgsp1_rep	CDS	5731388	5731744	.	+	0	Parent=Os04t0184100-01
Chr04	irgsp1_rep	three_prime_UTR	5731745	5731927	.	+	.	Parent=Os04t0184100-01
Chr04	irgsp1_rep	mRNA	5728136	5731769	.	-	.	ID=Os04t0184250-00;Name=Os04t0184250-00;Locus_id=Os04g0184250;Note=Hypothetical protein.;Transcript_evidence=tplb0045c19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0184250-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	5731382	5731769	.	-	.	Parent=Os04t0184250-00
Chr04	irgsp1_rep	five_prime_UTR	5730904	5731161	.	-	.	Parent=Os04t0184250-00
Chr04	irgsp1_rep	CDS	5730898	5730903	.	-	0	Parent=Os04t0184250-00
Chr04	irgsp1_rep	CDS	5730137	5730336	.	-	0	Parent=Os04t0184250-00
Chr04	irgsp1_rep	CDS	5728786	5728983	.	-	1	Parent=Os04t0184250-00
Chr04	irgsp1_rep	CDS	5728214	5728691	.	-	1	Parent=Os04t0184250-00
Chr04	irgsp1_rep	three_prime_UTR	5728136	5728213	.	-	.	Parent=Os04t0184250-00
Chr04	irgsp1_rep	mRNA	5739436	5740550	.	-	.	ID=Os04t0184450-00;Name=Os04t0184450-00;Locus_id=Os04g0184450;Note=Conserved hypothetical protein.;Transcript_evidence=AK335244 (DDBJ);ORF_evidence=F2CVT6 (UniProt);TENOR=Os04t0184450-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	5740051	5740550	.	-	0	Parent=Os04t0184450-00
Chr04	irgsp1_rep	CDS	5739595	5739946	.	-	1	Parent=Os04t0184450-00
Chr04	irgsp1_rep	three_prime_UTR	5739436	5739594	.	-	.	Parent=Os04t0184450-00
Chr04	irgsp1_rep	mRNA	5739476	5740015	.	+	.	ID=Os04t0184500-00;Name=Os04t0184500-00;Locus_id=Os04g0184500;Note=Similar to OSIGBa0148J22.3 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01MX9 (UniProt);GO=Molecular Function: carbon-nitrogen ligase activity%2C with glutamine as amido-N-donor (GO:0016884);InterPro=Amidase (IPR000120),Amidase signature domain (IPR023631);TENOR=Os04t0184500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	5739476	5740015	.	+	0	Parent=Os04t0184500-00
Chr04	irgsp1_rep	mRNA	5740039	5740266	.	+	.	ID=Os04t0184801-00;Name=Os04t0184801-00;Locus_id=Os04g0184801;Note=Similar to OSIGBa0148J22.3 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01MX9 (UniProt);GO=Molecular Function: carbon-nitrogen ligase activity%2C with glutamine as amido-N-donor (GO:0016884);InterPro=Amidase (IPR000120),Amidase signature domain (IPR023631);TENOR=Os04t0184801-00;KEGG=Os04t0184801-00
Chr04	irgsp1_rep	CDS	5740039	5740266	.	+	0	Parent=Os04t0184801-00
Chr04	irgsp1_rep	mRNA	5778855	5782412	.	-	.	ID=Os04t0184900-00;Name=Os04t0184900-00;Locus_id=Os04g0184900;Note=Hypothetical protein.;Transcript_evidence=tplb0045c19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0184900-00
Chr04	irgsp1_rep	five_prime_UTR	5782256	5782412	.	-	.	Parent=Os04t0184900-00
Chr04	irgsp1_rep	CDS	5782046	5782255	.	-	0	Parent=Os04t0184900-00
Chr04	irgsp1_rep	CDS	5781801	5781815	.	-	0	Parent=Os04t0184900-00
Chr04	irgsp1_rep	three_prime_UTR	5781559	5781800	.	-	.	Parent=Os04t0184900-00
Chr04	irgsp1_rep	three_prime_UTR	5778855	5779035	.	-	.	Parent=Os04t0184900-00
Chr04	irgsp1_rep	mRNA	5781635	5782412	.	+	.	ID=Os04t0185000-00;Name=Os04t0185000-00;Locus_id=Os04g0185000;Note=Similar to OSIGBa0140C02.6 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01MY1 (UniProt);GO=Molecular Function: carbon-nitrogen ligase activity%2C with glutamine as amido-N-donor (GO:0016884);InterPro=Amidase (IPR000120),Amidase signature domain (IPR023631);TENOR=Os04t0185000-00
Chr04	irgsp1_rep	CDS	5781635	5781823	.	+	0	Parent=Os04t0185000-00
Chr04	irgsp1_rep	CDS	5782056	5782412	.	+	0	Parent=Os04t0185000-00
Chr04	irgsp1_rep	mRNA	5785639	5788514	.	-	.	ID=Os04t0185100-01;Name=Os04t0185100-01;Locus_id=Os04g0185100;Note=DNA replication factor CDT1-like domain containing protein.;Transcript_evidence=AK119406 (DDBJ%2C Best hit);ORF_evidence=Q01MX2 (UniProt);InterPro=DNA replication factor CDT1-like (IPR014939);NIAS_FLcDNA=001-132-F01;Expression=AK119406;TENOR=Os04t0185100-01;KEGG=Os04t0185100-01
Chr04	irgsp1_rep	five_prime_UTR	5788444	5788514	.	-	.	Parent=Os04t0185100-01
Chr04	irgsp1_rep	CDS	5788025	5788443	.	-	0	Parent=Os04t0185100-01
Chr04	irgsp1_rep	CDS	5787661	5787780	.	-	1	Parent=Os04t0185100-01
Chr04	irgsp1_rep	CDS	5787336	5787570	.	-	1	Parent=Os04t0185100-01
Chr04	irgsp1_rep	CDS	5786553	5787194	.	-	0	Parent=Os04t0185100-01
Chr04	irgsp1_rep	CDS	5786273	5786474	.	-	0	Parent=Os04t0185100-01
Chr04	irgsp1_rep	CDS	5786097	5786187	.	-	2	Parent=Os04t0185100-01
Chr04	irgsp1_rep	CDS	5785926	5785983	.	-	1	Parent=Os04t0185100-01
Chr04	irgsp1_rep	three_prime_UTR	5785639	5785925	.	-	.	Parent=Os04t0185100-01
Chr04	irgsp1_rep	mRNA	5802095	5810965	.	+	.	ID=Os04t0185500-01;Name=Os04t0185500-01;Locus_id=Os04g0185500;CGSNL Gene Symbol=DLN108;CGSNL Gene Name=DLN REPRESSOR 108;Oryzabase Gene Symbol Synonym(s)=OsRFP%2C OsDLN108;Oryzabase Gene Name Synonym(s)=RING finger protein%2C DLN repressor 108%2C DLN motif protein 108;Note=Similar to Protein containing C-terminal RING-finger.;Transcript_evidence=AK064939 (DDBJ%2C Best hit);ORF_evidence=Q01MX1 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J013000P06;Oryzabase=21153;Expression=AK064939;TENOR=Os04t0185500-01;KEGG=Os04t0185500-01
Chr04	irgsp1_rep	five_prime_UTR	5802095	5802264	.	+	.	Parent=Os04t0185500-01
Chr04	irgsp1_rep	five_prime_UTR	5803081	5803170	.	+	.	Parent=Os04t0185500-01
Chr04	irgsp1_rep	five_prime_UTR	5804287	5804376	.	+	.	Parent=Os04t0185500-01
Chr04	irgsp1_rep	five_prime_UTR	5804996	5805104	.	+	.	Parent=Os04t0185500-01
Chr04	irgsp1_rep	CDS	5805105	5806787	.	+	0	Parent=Os04t0185500-01
Chr04	irgsp1_rep	CDS	5808661	5808732	.	+	0	Parent=Os04t0185500-01
Chr04	irgsp1_rep	CDS	5809669	5809764	.	+	0	Parent=Os04t0185500-01
Chr04	irgsp1_rep	CDS	5809900	5810046	.	+	0	Parent=Os04t0185500-01
Chr04	irgsp1_rep	CDS	5810590	5810721	.	+	0	Parent=Os04t0185500-01
Chr04	irgsp1_rep	three_prime_UTR	5810722	5810965	.	+	.	Parent=Os04t0185500-01
Chr04	irgsp1_rep	mRNA	5811361	5813082	.	-	.	ID=Os04t0185600-00;Name=Os04t0185600-00;Locus_id=Os04g0185600;CGSNL Gene Symbol=PT5;CGSNL Gene Name=PHOSPHATE TRANSPORTER 5;Oryzabase Gene Symbol Synonym(s)=OsPT5%2C OsPht1%3B5%2C Pht1%3B5%2C PHT1-5;Oryzabase Gene Name Synonym(s)=Probable inorganic phosphate transporter 1-5;Note=General substrate transporter domain containing protein.;Transcript_evidence=AY569610 (DDBJ%2C Best hit);ORF_evidence=Q01MX0 (UniProt);GO=Biological Process: phosphate ion transport (GO:0006817),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: inorganic phosphate transmembrane transporter activity (GO:0005315),Molecular Function: transmembrane transporter activity (GO:0022857);InterPro=Phosphate permease (IPR004738),General substrate transporter (IPR005828),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);Oryzabase=8220;TENOR=Os04t0185600-00;KEGG=Os04t0185600-00
Chr04	irgsp1_rep	CDS	5811436	5813082	.	-	0	Parent=Os04t0185600-00
Chr04	irgsp1_rep	three_prime_UTR	5811361	5811435	.	-	.	Parent=Os04t0185600-00
Chr04	irgsp1_rep	mRNA	5846286	5849130	.	+	.	ID=Os04t0186400-01;Name=Os04t0186400-01;Locus_id=Os04g0186400;RAP-DB Gene Symbol Synonym(s)=PT4%2C OsPT4%2C PHT1-4%2C OsPht1%3B4%2C PHT1-2;RAP-DB Gene Name Synonym(s)=PHOSPHATE TRANSPORTER 4%2C Probable inorganic phosphate transporter 1-4;CGSNL Gene Symbol=PT4;CGSNL Gene Name=PHOSPHATE TRANSPORTER 4;Oryzabase Gene Symbol Synonym(s)=OsPT4%2C PHT1-4%2C OsPht1%3B4%2C PHT1-2;Oryzabase Gene Name Synonym(s)=Probable inorganic phosphate transporter 1-4;Note=Pi transporter%2C Pi homeostasis%2C Embryo development%2C Seed germination;Transcript_evidence=AK101380,AF536964;ORF_evidence=Q8H6H2;GO=Biological Process: phosphate ion transport (GO:0006817),Biological Process: transmembrane transport (GO:0055085),Molecular Function: inorganic phosphate transmembrane transporter activity (GO:0005315),Molecular Function: transmembrane transporter activity (GO:0022857),Cellular Component: integral component of membrane (GO:0016021);InterPro=General substrate transporter (IPR005828),Phosphate permease (IPR004738),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J033036E12;Manual Curation=May 22%2C 2015;Literature_PMID=25702710,25970642;Oryzabase=8219;Expression=AK101380;TENOR=Os04t0186400-01;KEGG=Os04t0186400-01
Chr04	irgsp1_rep	five_prime_UTR	5846286	5847435	.	+	.	Parent=Os04t0186400-01
Chr04	irgsp1_rep	CDS	5847436	5849052	.	+	0	Parent=Os04t0186400-01
Chr04	irgsp1_rep	three_prime_UTR	5849053	5849130	.	+	.	Parent=Os04t0186400-01
Chr04	irgsp1_rep	mRNA	5847226	5849272	.	+	.	ID=Os04t0186400-02;Name=Os04t0186400-02;Locus_id=Os04g0186400;CGSNL Gene Symbol=PT4;CGSNL Gene Name=PHOSPHATE TRANSPORTER 4;Oryzabase Gene Symbol Synonym(s)=OsPT4%2C PHT1-4%2C OsPht1%3B4%2C PHT1-2;Oryzabase Gene Name Synonym(s)=Probable inorganic phosphate transporter 1-4;Note=Similar to Phosphate transporter 6.;Transcript_evidence=AK063990 (DDBJ%2C Best hit);ORF_evidence=Q01MX0 (UniProt);GO=Biological Process: phosphate ion transport (GO:0006817),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: inorganic phosphate transmembrane transporter activity (GO:0005315),Molecular Function: transmembrane transporter activity (GO:0022857);InterPro=Phosphate permease (IPR004738),General substrate transporter (IPR005828),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=001-124-E03;Oryzabase=8219;Expression=AK063990;TENOR=Os04t0186400-02;KEGG=Os04t0186400-02
Chr04	irgsp1_rep	five_prime_UTR	5847226	5847435	.	+	.	Parent=Os04t0186400-02
Chr04	irgsp1_rep	CDS	5847436	5849052	.	+	0	Parent=Os04t0186400-02
Chr04	irgsp1_rep	three_prime_UTR	5849053	5849272	.	+	.	Parent=Os04t0186400-02
Chr04	irgsp1_rep	mRNA	5847438	5849005	.	-	.	ID=Os04t0186450-00;Name=Os04t0186450-00;Locus_id=Os04g0186450;Note=Hypothetical gene.;Transcript_evidence=BT086156 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0186450-00
Chr04	irgsp1_rep	five_prime_UTR	5848615	5849005	.	-	.	Parent=Os04t0186450-00
Chr04	irgsp1_rep	five_prime_UTR	5848309	5848374	.	-	.	Parent=Os04t0186450-00
Chr04	irgsp1_rep	CDS	5847438	5848308	.	-	0	Parent=Os04t0186450-00
Chr04	irgsp1_rep	mRNA	5865168	5868179	.	+	.	ID=Os04t0186800-00;Name=Os04t0186800-00;Locus_id=Os04g0186800;CGSNL Gene Symbol=PT13;CGSNL Gene Name=PHOSPHATE TRANSPORTER 13;Oryzabase Gene Symbol Synonym(s)=OsPT13%2C PHT1-13%2C OsPht1%3B13%2C ORYsa%3BPHT1%3B13;Oryzabase Gene Name Synonym(s)=Putative inorganic phosphate transporter 1-13%2C PHOSPHATE TRANSPORTER1%3B13;Note=Similar to OSIGBa0113D21.1 protein.;Transcript_evidence=AY974045 (DDBJ);ORF_evidence=Q01MQ9 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transmembrane transporter activity (GO:0022857);InterPro=General substrate transporter (IPR005828),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);Oryzabase=8228;TENOR=Os04t0186800-00;KEGG=Os04t0186800-00
Chr04	irgsp1_rep	five_prime_UTR	5865168	5865175	.	+	.	Parent=Os04t0186800-00
Chr04	irgsp1_rep	CDS	5865176	5865431	.	+	0	Parent=Os04t0186800-00
Chr04	irgsp1_rep	CDS	5865535	5865779	.	+	2	Parent=Os04t0186800-00
Chr04	irgsp1_rep	CDS	5867153	5868178	.	+	0	Parent=Os04t0186800-00
Chr04	irgsp1_rep	three_prime_UTR	5868179	5868179	.	+	.	Parent=Os04t0186800-00
Chr04	irgsp1_rep	mRNA	5865174	5867983	.	-	.	ID=Os04t0187001-00;Name=Os04t0187001-00;Locus_id=Os04g0187001;Note=Hypothetical gene.;Transcript_evidence=BT086156 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0187001-00;KEGG=Os04t0187001-00
Chr04	irgsp1_rep	five_prime_UTR	5867810	5867983	.	-	.	Parent=Os04t0187001-00
Chr04	irgsp1_rep	five_prime_UTR	5867474	5867575	.	-	.	Parent=Os04t0187001-00
Chr04	irgsp1_rep	CDS	5867222	5867473	.	-	0	Parent=Os04t0187001-00
Chr04	irgsp1_rep	three_prime_UTR	5867115	5867221	.	-	.	Parent=Os04t0187001-00
Chr04	irgsp1_rep	three_prime_UTR	5865529	5865790	.	-	.	Parent=Os04t0187001-00
Chr04	irgsp1_rep	three_prime_UTR	5865174	5865427	.	-	.	Parent=Os04t0187001-00
Chr04	irgsp1_rep	mRNA	5931193	5931871	.	-	.	ID=Os04t0188433-01;Name=Os04t0188433-01;Locus_id=Os04g0188433;Note=Similar to OSIGBa0102N07.2 protein.;Transcript_evidence=AK241049 (DDBJ%2C Best hit);ORF_evidence=Q01MQ3 (UniProt);NIAS_FLcDNA=J065062E10;TENOR=Os04t0188433-01;KEGG=Os04t0188433-01
Chr04	irgsp1_rep	five_prime_UTR	5931847	5931871	.	-	.	Parent=Os04t0188433-01
Chr04	irgsp1_rep	CDS	5931836	5931846	.	-	0	Parent=Os04t0188433-01
Chr04	irgsp1_rep	CDS	5931411	5931720	.	-	1	Parent=Os04t0188433-01
Chr04	irgsp1_rep	three_prime_UTR	5931193	5931410	.	-	.	Parent=Os04t0188433-01
Chr04	irgsp1_rep	mRNA	5989525	5990234	.	+	.	ID=Os04t0188500-01;Name=Os04t0188500-01;Locus_id=Os04g0188500;Note=Conserved hypothetical protein.;Transcript_evidence=AK243272 (DDBJ%2C Best hit);ORF_evidence=NP_001052198.2 (RefSeq);NIAS_FLcDNA=J100049L04;TENOR=Os04t0188500-01;KEGG=Os04t0188500-01
Chr04	irgsp1_rep	five_prime_UTR	5989525	5989573	.	+	.	Parent=Os04t0188500-01
Chr04	irgsp1_rep	five_prime_UTR	5989687	5989707	.	+	.	Parent=Os04t0188500-01
Chr04	irgsp1_rep	CDS	5989708	5989977	.	+	0	Parent=Os04t0188500-01
Chr04	irgsp1_rep	three_prime_UTR	5989978	5990234	.	+	.	Parent=Os04t0188500-01
Chr04	irgsp1_rep	mRNA	6053705	6054979	.	-	.	ID=Os04t0189400-01;Name=Os04t0189400-01;Locus_id=Os04g0189400;Oryzabase Gene Symbol Synonym(s)=DEFL9%2C OsDEFL9%2C OsDf-09%2C Df-09;Oryzabase Gene Name Synonym(s)=defensin-like 9;Note=Gamma Purothionin family protein.;Transcript_evidence=AK071283 (DDBJ%2C Best hit);ORF_evidence=B6T249 (UniProt);GO=Biological Process: defense response (GO:0006952);InterPro=Knottin (IPR003614),Gamma thionin (IPR008176),Gamma Purothionin (IPR008177);NIAS_FLcDNA=J023085D09;Oryzabase=21076;Expression=AK071283;TENOR=Os04t0189400-01;KEGG=Os04t0189400-01
Chr04	irgsp1_rep	five_prime_UTR	6054971	6054979	.	-	.	Parent=Os04t0189400-01
Chr04	irgsp1_rep	CDS	6054790	6054970	.	-	0	Parent=Os04t0189400-01
Chr04	irgsp1_rep	CDS	6053935	6054089	.	-	2	Parent=Os04t0189400-01
Chr04	irgsp1_rep	three_prime_UTR	6053705	6053934	.	-	.	Parent=Os04t0189400-01
Chr04	irgsp1_rep	mRNA	6069813	6070580	.	-	.	ID=Os04t0189800-00;Name=Os04t0189800-00;Locus_id=Os04g0189800;Oryzabase Gene Symbol Synonym(s)=DEFL10%2C OsDEFL10%2C OsDf-10%2C Df-10;Oryzabase Gene Name Synonym(s)=defensin-like 10;Note=Similar to OSIGBa0160I04.1 protein.;Transcript_evidence=AK372976 (DDBJ);ORF_evidence=Q01MZ0 (UniProt);GO=Biological Process: defense response (GO:0006952);InterPro=Gamma thionin (IPR008176);Oryzabase=21077;TENOR=Os04t0189800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	6070370	6070580	.	-	0	Parent=Os04t0189800-00
Chr04	irgsp1_rep	CDS	6069815	6069966	.	-	2	Parent=Os04t0189800-00
Chr04	irgsp1_rep	three_prime_UTR	6069813	6069814	.	-	.	Parent=Os04t0189800-00
Chr04	irgsp1_rep	mRNA	6097184	6100998	.	+	.	ID=Os04t0190000-01;Name=Os04t0190000-01;Locus_id=Os04g0190000;Note=Similar to OSIGBa0111E13.1 protein.;Transcript_evidence=AK064761 (DDBJ%2C Best hit);ORF_evidence=Q01KR7 (UniProt);NIAS_FLcDNA=002-120-H03;Expression=AK064761;TENOR=Os04t0190000-01;KEGG=Os04t0190000-01
Chr04	irgsp1_rep	five_prime_UTR	6097184	6097351	.	+	.	Parent=Os04t0190000-01
Chr04	irgsp1_rep	CDS	6097352	6097705	.	+	0	Parent=Os04t0190000-01
Chr04	irgsp1_rep	three_prime_UTR	6097706	6098447	.	+	.	Parent=Os04t0190000-01
Chr04	irgsp1_rep	three_prime_UTR	6100542	6100998	.	+	.	Parent=Os04t0190000-01
Chr04	irgsp1_rep	mRNA	6097529	6099501	.	+	.	ID=Os04t0190000-02;Name=Os04t0190000-02;Locus_id=Os04g0190000;Note=Similar to OSIGBa0111E13.1 protein.;Transcript_evidence=AK107543 (DDBJ%2C Best hit);ORF_evidence=Q01KR7 (UniProt);NIAS_FLcDNA=002-129-H11;Expression=AK107543;TENOR=Os04t0190000-02;KEGG=Os04t0190000-02
Chr04	irgsp1_rep	CDS	6097529	6097705	.	+	0	Parent=Os04t0190000-02
Chr04	irgsp1_rep	three_prime_UTR	6097706	6099501	.	+	.	Parent=Os04t0190000-02
Chr04	irgsp1_rep	mRNA	6193705	6198710	.	-	.	ID=Os04t0191000-01;Name=Os04t0191000-01;Locus_id=Os04g0191000;Note=Similar to OSIGBa0114M03.4 protein.;Transcript_evidence=AK121055 (DDBJ%2C Best hit);ORF_evidence=Q01M69 (UniProt);GO=Biological Process: RNA-dependent DNA replication (GO:0006278),Biological Process: DNA integration (GO:0015074),Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723),Molecular Function: RNA-directed DNA polymerase activity (GO:0003964);InterPro=Reverse transcriptase (IPR000477),Chromo domain/shadow (IPR000953),Integrase%2C catalytic core (IPR001584),Retrotransposon gag protein (IPR005162),Ribonuclease H-like (IPR012337),Retroviral aspartyl protease (IPR013242),Chromo domain-like (IPR016197),Peptidase aspartic (IPR021109),Chromo domain (IPR023780);NIAS_FLcDNA=J023056G06;TENOR=Os04t0191000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	6198643	6198710	.	-	.	Parent=Os04t0191000-01
Chr04	irgsp1_rep	CDS	6194026	6198642	.	-	0	Parent=Os04t0191000-01
Chr04	irgsp1_rep	three_prime_UTR	6193705	6194025	.	-	.	Parent=Os04t0191000-01
Chr04	irgsp1_rep	mRNA	6225157	6226576	.	-	.	ID=Os04t0191400-01;Name=Os04t0191400-01;Locus_id=Os04g0191400;Note=Conserved hypothetical protein.;Transcript_evidence=AK121226 (DDBJ%2C Best hit);ORF_evidence=A2XQS2 (UniProt);NIAS_FLcDNA=J023091G07;Expression=AK121226;TENOR=Os04t0191400-01;KEGG=Os04t0191400-01
Chr04	irgsp1_rep	five_prime_UTR	6226543	6226576	.	-	.	Parent=Os04t0191400-01
Chr04	irgsp1_rep	five_prime_UTR	6225798	6225811	.	-	.	Parent=Os04t0191400-01
Chr04	irgsp1_rep	CDS	6225441	6225797	.	-	0	Parent=Os04t0191400-01
Chr04	irgsp1_rep	three_prime_UTR	6225157	6225440	.	-	.	Parent=Os04t0191400-01
Chr04	irgsp1_rep	mRNA	6231634	6232379	.	-	.	ID=Os04t0191500-01;Name=Os04t0191500-01;Locus_id=Os04g0191500;Note=Conserved hypothetical protein.;Transcript_evidence=AK060268 (DDBJ%2C Best hit);ORF_evidence=Q7XSK6 (UniProt);NIAS_FLcDNA=001-005-D09;Expression=AK060268;TENOR=Os04t0191500-01;KEGG=Os04t0191500-01
Chr04	irgsp1_rep	CDS	6232354	6232379	.	-	0	Parent=Os04t0191500-01
Chr04	irgsp1_rep	CDS	6231908	6232226	.	-	1	Parent=Os04t0191500-01
Chr04	irgsp1_rep	three_prime_UTR	6231634	6231907	.	-	.	Parent=Os04t0191500-01
Chr04	irgsp1_rep	mRNA	6257255	6258351	.	-	.	ID=Os04t0191600-01;Name=Os04t0191600-01;Locus_id=Os04g0191600;Note=Hypothetical conserved gene.;Transcript_evidence=AK068576 (DDBJ%2C Best hit);ORF_evidence=A2XQR9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated domain%2C type 3 (IPR013187),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013157C02;TENOR=Os04t0191600-01
Chr04	irgsp1_rep	five_prime_UTR	6258351	6258351	.	-	.	Parent=Os04t0191600-01
Chr04	irgsp1_rep	CDS	6257255	6258350	.	-	0	Parent=Os04t0191600-01
Chr04	irgsp1_rep	mRNA	6255986	6258345	.	-	.	ID=Os04t0191600-02;Name=Os04t0191600-02;Locus_id=Os04g0191600;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK068352 (DDBJ%2C Best hit);ORF_evidence=A2XQR9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated domain%2C type 3 (IPR013187),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013146A02;TENOR=Os04t0191600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	6258345	6258345	.	-	.	Parent=Os04t0191600-02
Chr04	irgsp1_rep	CDS	6257151	6258344	.	-	0	Parent=Os04t0191600-02
Chr04	irgsp1_rep	three_prime_UTR	6257136	6257150	.	-	.	Parent=Os04t0191600-02
Chr04	irgsp1_rep	three_prime_UTR	6255986	6256377	.	-	.	Parent=Os04t0191600-02
Chr04	irgsp1_rep	mRNA	6249415	6258334	.	-	.	ID=Os04t0191600-03;Name=Os04t0191600-03;Locus_id=Os04g0191600;Note=Hypothetical conserved gene.;Transcript_evidence=AK065570 (DDBJ%2C Best hit);ORF_evidence=A2XQR9 (UniProt);InterPro=F-box associated domain%2C type 3 (IPR013187);NIAS_FLcDNA=J013027N16;Expression=AK065570;TENOR=Os04t0191600-03;KEGG=Os04t0191600-03
Chr04	irgsp1_rep	CDS	6258080	6258334	.	-	0	Parent=Os04t0191600-03
Chr04	irgsp1_rep	CDS	6257816	6257989	.	-	0	Parent=Os04t0191600-03
Chr04	irgsp1_rep	CDS	6257151	6257726	.	-	0	Parent=Os04t0191600-03
Chr04	irgsp1_rep	three_prime_UTR	6257136	6257150	.	-	.	Parent=Os04t0191600-03
Chr04	irgsp1_rep	three_prime_UTR	6256196	6256377	.	-	.	Parent=Os04t0191600-03
Chr04	irgsp1_rep	three_prime_UTR	6255690	6255812	.	-	.	Parent=Os04t0191600-03
Chr04	irgsp1_rep	three_prime_UTR	6255413	6255551	.	-	.	Parent=Os04t0191600-03
Chr04	irgsp1_rep	three_prime_UTR	6252447	6252517	.	-	.	Parent=Os04t0191600-03
Chr04	irgsp1_rep	three_prime_UTR	6249415	6249887	.	-	.	Parent=Os04t0191600-03
Chr04	irgsp1_rep	mRNA	6247543	6258331	.	-	.	ID=Os04t0191600-04;Name=Os04t0191600-04;Locus_id=Os04g0191600;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK069445 (DDBJ%2C Best hit);ORF_evidence=A2XQR9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated domain%2C type 3 (IPR013187),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023020G11;TENOR=Os04t0191600-04;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	6258330	6258331	.	-	.	Parent=Os04t0191600-04
Chr04	irgsp1_rep	CDS	6257151	6258329	.	-	0	Parent=Os04t0191600-04
Chr04	irgsp1_rep	three_prime_UTR	6257136	6257150	.	-	.	Parent=Os04t0191600-04
Chr04	irgsp1_rep	three_prime_UTR	6256196	6256377	.	-	.	Parent=Os04t0191600-04
Chr04	irgsp1_rep	three_prime_UTR	6255690	6256033	.	-	.	Parent=Os04t0191600-04
Chr04	irgsp1_rep	three_prime_UTR	6255413	6255551	.	-	.	Parent=Os04t0191600-04
Chr04	irgsp1_rep	three_prime_UTR	6252447	6252517	.	-	.	Parent=Os04t0191600-04
Chr04	irgsp1_rep	three_prime_UTR	6249773	6249887	.	-	.	Parent=Os04t0191600-04
Chr04	irgsp1_rep	three_prime_UTR	6247868	6247955	.	-	.	Parent=Os04t0191600-04
Chr04	irgsp1_rep	three_prime_UTR	6247543	6247711	.	-	.	Parent=Os04t0191600-04
Chr04	irgsp1_rep	mRNA	6262588	6264062	.	-	.	ID=Os04t0191800-01;Name=Os04t0191800-01;Locus_id=Os04g0191800;Oryzabase Gene Symbol Synonym(s)=OsFbox182%2C Os_F0223%2C F-box118;Oryzabase Gene Name Synonym(s)=F-box protein 182;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK067184 (DDBJ%2C Best hit);ORF_evidence=A2XQR7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated domain%2C type 3 (IPR013187),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013096D22;Oryzabase=16971;Expression=AK067184;TENOR=Os04t0191800-01;KEGG=Os04t0191800-01
Chr04	irgsp1_rep	five_prime_UTR	6263979	6264062	.	-	.	Parent=Os04t0191800-01
Chr04	irgsp1_rep	CDS	6262776	6263978	.	-	0	Parent=Os04t0191800-01
Chr04	irgsp1_rep	three_prime_UTR	6262588	6262775	.	-	.	Parent=Os04t0191800-01
Chr04	irgsp1_rep	mRNA	6306373	6309477	.	+	.	ID=Os04t0192350-01;Name=Os04t0192350-01;Locus_id=Os04g0192350;Note=Similar to H0124E07.4 protein.;Transcript_evidence=AK318599 (DDBJ%2C Best hit);ORF_evidence=Q25AH9 (UniProt);NIAS_FLcDNA=J100065F01;TENOR=Os04t0192350-01;KEGG=Os04t0192350-01
Chr04	irgsp1_rep	five_prime_UTR	6306373	6306541	.	+	.	Parent=Os04t0192350-01
Chr04	irgsp1_rep	CDS	6306542	6306826	.	+	0	Parent=Os04t0192350-01
Chr04	irgsp1_rep	CDS	6307941	6308004	.	+	0	Parent=Os04t0192350-01
Chr04	irgsp1_rep	CDS	6309221	6309336	.	+	2	Parent=Os04t0192350-01
Chr04	irgsp1_rep	three_prime_UTR	6309337	6309477	.	+	.	Parent=Os04t0192350-01
Chr04	irgsp1_rep	mRNA	6314737	6316723	.	+	.	ID=Os04t0192775-00;Name=Os04t0192775-00;Locus_id=Os04g0192775;Note=Methyl-CpG DNA binding domain containing protein.;Transcript_evidence=EU944764 (DDBJ);ORF_evidence=Q7XWX3 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Methyl-CpG DNA binding (IPR001739),DNA-binding%2C integrase-type (IPR016177);TENOR=Os04t0192775-00
Chr04	irgsp1_rep	CDS	6314737	6314916	.	+	0	Parent=Os04t0192775-00
Chr04	irgsp1_rep	CDS	6315024	6315153	.	+	0	Parent=Os04t0192775-00
Chr04	irgsp1_rep	CDS	6315237	6315312	.	+	2	Parent=Os04t0192775-00
Chr04	irgsp1_rep	CDS	6316008	6316062	.	+	1	Parent=Os04t0192775-00
Chr04	irgsp1_rep	three_prime_UTR	6316063	6316133	.	+	.	Parent=Os04t0192775-00
Chr04	irgsp1_rep	three_prime_UTR	6316405	6316510	.	+	.	Parent=Os04t0192775-00
Chr04	irgsp1_rep	three_prime_UTR	6316577	6316723	.	+	.	Parent=Os04t0192775-00
Chr04	irgsp1_rep	mRNA	6378760	6380789	.	+	.	ID=Os04t0193200-00;Name=Os04t0193200-00;Locus_id=Os04g0193200;Note=Methyl-CpG DNA binding domain containing protein.;Transcript_evidence=EU944764 (DDBJ);ORF_evidence=B9FDX8 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Methyl-CpG DNA binding (IPR001739),DNA-binding%2C integrase-type (IPR016177);TENOR=Os04t0193200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	6378760	6378939	.	+	0	Parent=Os04t0193200-00
Chr04	irgsp1_rep	CDS	6379047	6379172	.	+	0	Parent=Os04t0193200-00
Chr04	irgsp1_rep	CDS	6379257	6379334	.	+	0	Parent=Os04t0193200-00
Chr04	irgsp1_rep	CDS	6380020	6380145	.	+	0	Parent=Os04t0193200-00
Chr04	irgsp1_rep	CDS	6380414	6380515	.	+	0	Parent=Os04t0193200-00
Chr04	irgsp1_rep	CDS	6380586	6380789	.	+	0	Parent=Os04t0193200-00
Chr04	irgsp1_rep	mRNA	6387235	6388945	.	-	.	ID=Os04t0193300-01;Name=Os04t0193300-01;Locus_id=Os04g0193300;Oryzabase Gene Symbol Synonym(s)=OsFbox183%2C Fbox183%2C Os_F0203%2C F-box119;Oryzabase Gene Name Synonym(s)=F-box protein 183;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK107044 (DDBJ%2C Best hit);ORF_evidence=Q7X917 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated domain%2C type 3 (IPR013187),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-121-C07;Oryzabase=16972;Expression=AK107044;TENOR=Os04t0193300-01;KEGG=Os04t0193300-01
Chr04	irgsp1_rep	five_prime_UTR	6388944	6388945	.	-	.	Parent=Os04t0193300-01
Chr04	irgsp1_rep	CDS	6387717	6388943	.	-	0	Parent=Os04t0193300-01
Chr04	irgsp1_rep	three_prime_UTR	6387235	6387716	.	-	.	Parent=Os04t0193300-01
Chr04	irgsp1_rep	mRNA	6384637	6388935	.	-	.	ID=Os04t0193300-02;Name=Os04t0193300-02;Locus_id=Os04g0193300;Oryzabase Gene Symbol Synonym(s)=OsFbox183%2C Fbox183%2C Os_F0203%2C F-box119;Oryzabase Gene Name Synonym(s)=F-box protein 183;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK106803 (DDBJ%2C Best hit);ORF_evidence=Q7X917 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated domain%2C type 3 (IPR013187),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-116-C01;Oryzabase=16972;Expression=AK106803;TENOR=Os04t0193300-02;KEGG=Os04t0193300-02
Chr04	irgsp1_rep	five_prime_UTR	6388935	6388935	.	-	.	Parent=Os04t0193300-02
Chr04	irgsp1_rep	CDS	6387717	6388934	.	-	0	Parent=Os04t0193300-02
Chr04	irgsp1_rep	three_prime_UTR	6387639	6387716	.	-	.	Parent=Os04t0193300-02
Chr04	irgsp1_rep	three_prime_UTR	6384637	6385103	.	-	.	Parent=Os04t0193300-02
Chr04	irgsp1_rep	mRNA	6442037	6452057	.	+	.	ID=Os04t0193950-00;Name=Os04t0193950-00;Locus_id=Os04g0193950;CGSNL Gene Symbol=LR10;Oryzabase Gene Symbol Synonym(s)=OsLR10;Oryzabase Gene Name Synonym(s)=resistance protein LR10;Note=Disease resistance protein domain containing protein.;Transcript_evidence=AK364429 (DDBJ);ORF_evidence=Q7XML7 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);Oryzabase=22832;TENOR=Os04t0193950-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	6442037	6442257	.	+	.	Parent=Os04t0193950-00
Chr04	irgsp1_rep	CDS	6442258	6442299	.	+	0	Parent=Os04t0193950-00
Chr04	irgsp1_rep	CDS	6448648	6449150	.	+	0	Parent=Os04t0193950-00
Chr04	irgsp1_rep	CDS	6450334	6450463	.	+	1	Parent=Os04t0193950-00
Chr04	irgsp1_rep	three_prime_UTR	6450464	6452057	.	+	.	Parent=Os04t0193950-00
Chr04	irgsp1_rep	mRNA	6454698	6456042	.	-	.	ID=Os04t0194000-01;Name=Os04t0194000-01;Locus_id=Os04g0194000;Oryzabase Gene Symbol Synonym(s)=OsFbox184%2C Os_F0197;Oryzabase Gene Name Synonym(s)=F-box protein 184;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK102654 (DDBJ%2C Best hit);ORF_evidence=A2XQR2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated domain%2C type 3 (IPR013187),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033101G08;Oryzabase=16973;Expression=AK102654;TENOR=Os04t0194000-01;KEGG=Os04t0194000-01
Chr04	irgsp1_rep	five_prime_UTR	6456002	6456042	.	-	.	Parent=Os04t0194000-01
Chr04	irgsp1_rep	CDS	6454889	6456001	.	-	0	Parent=Os04t0194000-01
Chr04	irgsp1_rep	three_prime_UTR	6454698	6454888	.	-	.	Parent=Os04t0194000-01
Chr04	irgsp1_rep	mRNA	6455528	6456076	.	+	.	ID=Os04t0194200-00;Name=Os04t0194200-00;Locus_id=Os04g0194200;Note=Hypothetical protein.;Transcript_evidence=BT060879 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0194200-00
Chr04	irgsp1_rep	five_prime_UTR	6455528	6455725	.	+	.	Parent=Os04t0194200-00
Chr04	irgsp1_rep	CDS	6455726	6455983	.	+	0	Parent=Os04t0194200-00
Chr04	irgsp1_rep	three_prime_UTR	6455984	6456076	.	+	.	Parent=Os04t0194200-00
Chr04	irgsp1_rep	mRNA	6465369	6466580	.	+	.	ID=Os04t0194400-00;Name=Os04t0194400-00;Locus_id=Os04g0194400;Note=Similar to cytokinin-O-glucosyltransferase 3.;Transcript_evidence=EU496516 (DDBJ);ORF_evidence=NP_001148090.1 (RefSeq);TENOR=Os04t0194400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	6465369	6465449	.	+	.	Parent=Os04t0194400-00
Chr04	irgsp1_rep	five_prime_UTR	6466109	6466214	.	+	.	Parent=Os04t0194400-00
Chr04	irgsp1_rep	CDS	6466215	6466580	.	+	0	Parent=Os04t0194400-00
Chr04	irgsp1_rep	mRNA	6470608	6474509	.	-	.	ID=Os04t0194433-01;Name=Os04t0194433-01;Locus_id=Os04g0194433;Note=Hypothetical gene.;Transcript_evidence=AK289101 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090096F16;TENOR=Os04t0194433-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	6472993	6474509	.	-	.	Parent=Os04t0194433-01
Chr04	irgsp1_rep	CDS	6471889	6472992	.	-	0	Parent=Os04t0194433-01
Chr04	irgsp1_rep	three_prime_UTR	6470608	6471888	.	-	.	Parent=Os04t0194433-01
Chr04	irgsp1_rep	mRNA	6472429	6473124	.	+	.	ID=Os04t0194466-00;Name=Os04t0194466-00;Locus_id=Os04g0194466;CGSNL Gene Symbol=AT11;CGSNL Gene Name=ACYLTRANSFERASE 11;Oryzabase Gene Symbol Synonym(s)=OsAT11%2C OsAt11;Oryzabase Gene Name Synonym(s)=acyltransferase 11;Note=Transferase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001052210.2 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);Oryzabase=11743;TENOR=Os04t0194466-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	6472429	6473124	.	+	0	Parent=Os04t0194466-00
Chr04	irgsp1_rep	mRNA	6475357	6481772	.	-	.	ID=Os04t0194500-01;Name=Os04t0194500-01;Locus_id=Os04g0194500;CGSNL Gene Symbol=ABCG8;CGSNL Gene Name=ABC TRANSPORTER G FAMILY MEMBER 8;Oryzabase Gene Symbol Synonym(s)=OsABCG8;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 8;Note=Similar to ABC transporter-like protein.;Transcript_evidence=AK121164 (DDBJ%2C Best hit);ORF_evidence=B9FDX6 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=J023080I03;Oryzabase=11985;Expression=AK121164;TENOR=Os04t0194500-01;KEGG=Os04t0194500-01
Chr04	irgsp1_rep	five_prime_UTR	6481673	6481772	.	-	.	Parent=Os04t0194500-01
Chr04	irgsp1_rep	CDS	6481488	6481672	.	-	0	Parent=Os04t0194500-01
Chr04	irgsp1_rep	CDS	6481257	6481333	.	-	1	Parent=Os04t0194500-01
Chr04	irgsp1_rep	CDS	6479521	6479784	.	-	2	Parent=Os04t0194500-01
Chr04	irgsp1_rep	CDS	6479342	6479405	.	-	2	Parent=Os04t0194500-01
Chr04	irgsp1_rep	CDS	6479096	6479236	.	-	1	Parent=Os04t0194500-01
Chr04	irgsp1_rep	CDS	6478951	6478985	.	-	1	Parent=Os04t0194500-01
Chr04	irgsp1_rep	CDS	6478778	6478851	.	-	2	Parent=Os04t0194500-01
Chr04	irgsp1_rep	CDS	6477762	6478642	.	-	0	Parent=Os04t0194500-01
Chr04	irgsp1_rep	CDS	6477131	6477427	.	-	1	Parent=Os04t0194500-01
Chr04	irgsp1_rep	CDS	6476590	6477048	.	-	1	Parent=Os04t0194500-01
Chr04	irgsp1_rep	CDS	6476314	6476462	.	-	1	Parent=Os04t0194500-01
Chr04	irgsp1_rep	CDS	6475943	6476232	.	-	2	Parent=Os04t0194500-01
Chr04	irgsp1_rep	CDS	6475735	6475859	.	-	0	Parent=Os04t0194500-01
Chr04	irgsp1_rep	CDS	6475450	6475606	.	-	1	Parent=Os04t0194500-01
Chr04	irgsp1_rep	three_prime_UTR	6475357	6475449	.	-	.	Parent=Os04t0194500-01
Chr04	irgsp1_rep	mRNA	6490902	6495594	.	-	.	ID=Os04t0194600-01;Name=Os04t0194600-01;Locus_id=Os04g0194600;CGSNL Gene Symbol=PCF1;CGSNL Gene Name=PROLIFERATING CELL FACTOR 1;Oryzabase Gene Symbol Synonym(s)=OsPCF1;Oryzabase Gene Name Synonym(s)=PROMOTER BINDING FACTOR1;Note=Similar to PCF1.;Transcript_evidence=AK100180 (DDBJ%2C Best hit);ORF_evidence=O23875 (UniProt);InterPro=Transcription factor%2C TCP (IPR005333),Transcription factor TCP subgroup (IPR017887);NIAS_FLcDNA=J023030B07;Oryzabase=11697;Expression=AK100180;TENOR=Os04t0194600-01;KEGG=Os04t0194600-01
Chr04	irgsp1_rep	CDS	6495064	6495594	.	-	0	Parent=Os04t0194600-01
Chr04	irgsp1_rep	three_prime_UTR	6490902	6495063	.	-	.	Parent=Os04t0194600-01
Chr04	irgsp1_rep	mRNA	6499189	6502384	.	+	.	ID=Os04t0194800-00;Name=Os04t0194800-00;Locus_id=Os04g0194800;Note=Hypothetical conserved gene.;Transcript_evidence=AK073295 (DDBJ%2C Secondary hit);ORF_evidence=B8AVQ6 (UniProt);Expression=AK073295;TENOR=Os04t0194800-00;KEGG=Os04t0194800-00
Chr04	irgsp1_rep	five_prime_UTR	6499189	6499883	.	+	.	Parent=Os04t0194800-00
Chr04	irgsp1_rep	five_prime_UTR	6500067	6500187	.	+	.	Parent=Os04t0194800-00
Chr04	irgsp1_rep	five_prime_UTR	6500282	6500434	.	+	.	Parent=Os04t0194800-00
Chr04	irgsp1_rep	five_prime_UTR	6500526	6500635	.	+	.	Parent=Os04t0194800-00
Chr04	irgsp1_rep	CDS	6500636	6500677	.	+	0	Parent=Os04t0194800-00
Chr04	irgsp1_rep	CDS	6501821	6501921	.	+	0	Parent=Os04t0194800-00
Chr04	irgsp1_rep	CDS	6502138	6502225	.	+	1	Parent=Os04t0194800-00
Chr04	irgsp1_rep	three_prime_UTR	6502226	6502384	.	+	.	Parent=Os04t0194800-00
Chr04	irgsp1_rep	mRNA	6511956	6513685	.	-	.	ID=Os04t0194950-00;Name=Os04t0194950-00;Locus_id=Os04g0194950;Note=Hypothetical gene.;Transcript_evidence=BT086997 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0194950-00;KEGG=Os04t0194950-00
Chr04	irgsp1_rep	five_prime_UTR	6513588	6513685	.	-	.	Parent=Os04t0194950-00
Chr04	irgsp1_rep	CDS	6513578	6513587	.	-	0	Parent=Os04t0194950-00
Chr04	irgsp1_rep	CDS	6512921	6513089	.	-	2	Parent=Os04t0194950-00
Chr04	irgsp1_rep	CDS	6512774	6512831	.	-	1	Parent=Os04t0194950-00
Chr04	irgsp1_rep	three_prime_UTR	6512568	6512773	.	-	.	Parent=Os04t0194950-00
Chr04	irgsp1_rep	three_prime_UTR	6511956	6512027	.	-	.	Parent=Os04t0194950-00
Chr04	irgsp1_rep	mRNA	6511625	6518888	.	+	.	ID=Os04t0195000-01;Name=Os04t0195000-01;Locus_id=Os04g0195000;Oryzabase Gene Symbol Synonym(s)=OsWD40-99;Note=Similar to Vacuolar assembly protein VPS41 homolog.;Transcript_evidence=AK073992 (DDBJ%2C Best hit);ORF_evidence=P93231 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Clathrin%2C heavy chain/VPS%2C 7-fold repeat (IPR000547),WD40 repeat (IPR001680),Zinc finger%2C RING-type (IPR001841),Tetratricopeptide-like helical (IPR011990),WD40/YVTN repeat-like-containing domain (IPR015943),Vacuolar protein sorting-associated protein 41 (IPR016902),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J033072G13;Oryzabase=10780;Expression=AK073992;TENOR=Os04t0195000-01;KEGG=Os04t0195000-01
Chr04	irgsp1_rep	five_prime_UTR	6511625	6511743	.	+	.	Parent=Os04t0195000-01
Chr04	irgsp1_rep	CDS	6511744	6512031	.	+	0	Parent=Os04t0195000-01
Chr04	irgsp1_rep	CDS	6512572	6512844	.	+	0	Parent=Os04t0195000-01
Chr04	irgsp1_rep	CDS	6512927	6513106	.	+	0	Parent=Os04t0195000-01
Chr04	irgsp1_rep	CDS	6513594	6513854	.	+	0	Parent=Os04t0195000-01
Chr04	irgsp1_rep	CDS	6514329	6514461	.	+	0	Parent=Os04t0195000-01
Chr04	irgsp1_rep	CDS	6514562	6514652	.	+	2	Parent=Os04t0195000-01
Chr04	irgsp1_rep	CDS	6515079	6515181	.	+	1	Parent=Os04t0195000-01
Chr04	irgsp1_rep	CDS	6515715	6515818	.	+	0	Parent=Os04t0195000-01
Chr04	irgsp1_rep	CDS	6515967	6516060	.	+	1	Parent=Os04t0195000-01
Chr04	irgsp1_rep	CDS	6516143	6516298	.	+	0	Parent=Os04t0195000-01
Chr04	irgsp1_rep	CDS	6516382	6516444	.	+	0	Parent=Os04t0195000-01
Chr04	irgsp1_rep	CDS	6516546	6516611	.	+	0	Parent=Os04t0195000-01
Chr04	irgsp1_rep	CDS	6516828	6517028	.	+	0	Parent=Os04t0195000-01
Chr04	irgsp1_rep	CDS	6517157	6517234	.	+	0	Parent=Os04t0195000-01
Chr04	irgsp1_rep	CDS	6517323	6517442	.	+	0	Parent=Os04t0195000-01
Chr04	irgsp1_rep	CDS	6517540	6517620	.	+	0	Parent=Os04t0195000-01
Chr04	irgsp1_rep	CDS	6517706	6517791	.	+	0	Parent=Os04t0195000-01
Chr04	irgsp1_rep	CDS	6518078	6518159	.	+	1	Parent=Os04t0195000-01
Chr04	irgsp1_rep	CDS	6518251	6518640	.	+	0	Parent=Os04t0195000-01
Chr04	irgsp1_rep	three_prime_UTR	6518641	6518888	.	+	.	Parent=Os04t0195000-01
Chr04	irgsp1_rep	mRNA	6520533	6522270	.	-	.	ID=Os04t0195100-01;Name=Os04t0195100-01;Locus_id=Os04g0195100;Oryzabase Gene Symbol Synonym(s)=OsFbox185%2C Os_F0197;Oryzabase Gene Name Synonym(s)=F-box protein 185;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK107201 (DDBJ%2C Best hit);ORF_evidence=A2XQQ6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated domain%2C type 3 (IPR013187),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-125-B03;Oryzabase=16974;Expression=AK107201;TENOR=Os04t0195100-01;KEGG=Os04t0195100-01
Chr04	irgsp1_rep	five_prime_UTR	6522196	6522270	.	-	.	Parent=Os04t0195100-01
Chr04	irgsp1_rep	CDS	6521047	6522195	.	-	0	Parent=Os04t0195100-01
Chr04	irgsp1_rep	three_prime_UTR	6521003	6521046	.	-	.	Parent=Os04t0195100-01
Chr04	irgsp1_rep	three_prime_UTR	6520533	6520892	.	-	.	Parent=Os04t0195100-01
Chr04	irgsp1_rep	mRNA	6523581	6532694	.	+	.	ID=Os04t0195400-00;Name=Os04t0195400-00;Locus_id=Os04g0195400;Note=Transposase%2C MuDR%2C plant domain containing protein.;Transcript_evidence=AK103669 (DDBJ%2C Secondary hit);ORF_evidence=Q7FAF2 (UniProt);InterPro=Transposase%2C MuDR%2C plant (IPR004332);TENOR=Os04t0195400-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	6523581	6523646	.	+	.	Parent=Os04t0195400-00
Chr04	irgsp1_rep	five_prime_UTR	6524235	6524332	.	+	.	Parent=Os04t0195400-00
Chr04	irgsp1_rep	five_prime_UTR	6529430	6529506	.	+	.	Parent=Os04t0195400-00
Chr04	irgsp1_rep	five_prime_UTR	6529937	6530162	.	+	.	Parent=Os04t0195400-00
Chr04	irgsp1_rep	CDS	6530163	6530782	.	+	0	Parent=Os04t0195400-00
Chr04	irgsp1_rep	CDS	6530804	6531302	.	+	1	Parent=Os04t0195400-00
Chr04	irgsp1_rep	three_prime_UTR	6531303	6532694	.	+	.	Parent=Os04t0195400-00
Chr04	irgsp1_rep	mRNA	6564647	6566873	.	+	.	ID=Os04t0196200-00;Name=Os04t0196200-00;Locus_id=Os04g0196200;Oryzabase Gene Name Synonym(s)=O-methyltransferase%2C flavonoid methyltransferase;Note=Winged helix repressor DNA-binding domain containing protein.;Transcript_evidence=CT837594 (DDBJ%2C Best hit);ORF_evidence=Q01MZ9 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: O-methyltransferase activity (GO:0008171),Molecular Function: protein dimerization activity (GO:0046983);InterPro=O-methyltransferase%2C family 2 (IPR001077),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Plant methyltransferase dimerisation (IPR012967),O-methyltransferase%2C COMT%2C eukaryota (IPR016461);Oryzabase=18240;TENOR=Os04t0196200-00;KEGG=Os04t0196200-00
Chr04	irgsp1_rep	five_prime_UTR	6564647	6564691	.	+	.	Parent=Os04t0196200-00
Chr04	irgsp1_rep	CDS	6564692	6565462	.	+	0	Parent=Os04t0196200-00
Chr04	irgsp1_rep	CDS	6566099	6566263	.	+	0	Parent=Os04t0196200-00
Chr04	irgsp1_rep	three_prime_UTR	6566264	6566873	.	+	.	Parent=Os04t0196200-00
Chr04	irgsp1_rep	mRNA	6567884	6568626	.	+	.	ID=Os04t0196300-01;Name=Os04t0196300-01;Locus_id=Os04g0196300;Note=Hypothetical protein.;Transcript_evidence=AK073111 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033022M24;TENOR=Os04t0196300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	6567884	6568096	.	+	.	Parent=Os04t0196300-01
Chr04	irgsp1_rep	CDS	6568097	6568405	.	+	0	Parent=Os04t0196300-01
Chr04	irgsp1_rep	three_prime_UTR	6568406	6568443	.	+	.	Parent=Os04t0196300-01
Chr04	irgsp1_rep	three_prime_UTR	6568517	6568626	.	+	.	Parent=Os04t0196300-01
Chr04	irgsp1_rep	mRNA	6593198	6595756	.	-	.	ID=Os04t0196600-01;Name=Os04t0196600-01;Locus_id=Os04g0196600;Note=Glycosyltransferase AER61%2C uncharacterized domain containing protein.;Transcript_evidence=AK121999 (DDBJ%2C Best hit);ORF_evidence=Q01MZ8 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyltransferase AER61%2C uncharacterised (IPR007657);NIAS_FLcDNA=J033110G11;Oryzabase=15254;Expression=AK121999;TENOR=Os04t0196600-01;KEGG=Os04t0196600-01
Chr04	irgsp1_rep	five_prime_UTR	6595724	6595756	.	-	.	Parent=Os04t0196600-01
Chr04	irgsp1_rep	CDS	6595564	6595723	.	-	0	Parent=Os04t0196600-01
Chr04	irgsp1_rep	CDS	6595324	6595401	.	-	2	Parent=Os04t0196600-01
Chr04	irgsp1_rep	CDS	6595157	6595240	.	-	2	Parent=Os04t0196600-01
Chr04	irgsp1_rep	CDS	6594975	6595034	.	-	2	Parent=Os04t0196600-01
Chr04	irgsp1_rep	CDS	6594598	6594675	.	-	2	Parent=Os04t0196600-01
Chr04	irgsp1_rep	CDS	6593277	6594469	.	-	2	Parent=Os04t0196600-01
Chr04	irgsp1_rep	three_prime_UTR	6593198	6593276	.	-	.	Parent=Os04t0196600-01
Chr04	irgsp1_rep	mRNA	6593217	6594473	.	+	.	ID=Os04t0196850-00;Name=Os04t0196850-00;Locus_id=Os04g0196850;Note=Similar to OSIGBa0132I10.3 protein.;Transcript_evidence=tplb0046e07 (Wheat FLcDNA);ORF_evidence=Q01MZ8 (UniProt);TENOR=Os04t0196850-00
Chr04	irgsp1_rep	CDS	6593217	6594473	.	+	0	Parent=Os04t0196850-00
Chr04	irgsp1_rep	mRNA	6630053	6630961	.	+	.	ID=Os04t0197100-00;Name=Os04t0197100-00;Locus_id=Os04g0197100;Note=Similar to OSIGBa0146N20.4 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01M96 (UniProt);InterPro=Gnk2-homologous domain (IPR002902);TENOR=Os04t0197100-00;KEGG=Os04t0197100-00
Chr04	irgsp1_rep	CDS	6630053	6630961	.	+	0	Parent=Os04t0197100-00
Chr04	irgsp1_rep	mRNA	6634102	6638835	.	+	.	ID=Os04t0197200-01;Name=Os04t0197200-01;Locus_id=Os04g0197200;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK073556 (DDBJ%2C Best hit);ORF_evidence=Q01M94 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033046O13;Expression=AK073556;TENOR=Os04t0197200-01;KEGG=Os04t0197200-01
Chr04	irgsp1_rep	five_prime_UTR	6634102	6634461	.	+	.	Parent=Os04t0197200-01
Chr04	irgsp1_rep	CDS	6634462	6634543	.	+	0	Parent=Os04t0197200-01
Chr04	irgsp1_rep	CDS	6634997	6635119	.	+	2	Parent=Os04t0197200-01
Chr04	irgsp1_rep	CDS	6636452	6636585	.	+	2	Parent=Os04t0197200-01
Chr04	irgsp1_rep	CDS	6637080	6637287	.	+	0	Parent=Os04t0197200-01
Chr04	irgsp1_rep	CDS	6637510	6637747	.	+	2	Parent=Os04t0197200-01
Chr04	irgsp1_rep	CDS	6637945	6638119	.	+	1	Parent=Os04t0197200-01
Chr04	irgsp1_rep	CDS	6638231	6638599	.	+	0	Parent=Os04t0197200-01
Chr04	irgsp1_rep	three_prime_UTR	6638600	6638835	.	+	.	Parent=Os04t0197200-01
Chr04	irgsp1_rep	mRNA	6637060	6638051	.	-	.	ID=Os04t0197275-00;Name=Os04t0197275-00;Locus_id=Os04g0197275;Note=Hypothetical protein.;Transcript_evidence=FP096127 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0197275-00
Chr04	irgsp1_rep	five_prime_UTR	6637879	6638051	.	-	.	Parent=Os04t0197275-00
Chr04	irgsp1_rep	five_prime_UTR	6637448	6637784	.	-	.	Parent=Os04t0197275-00
Chr04	irgsp1_rep	five_prime_UTR	6637280	6637320	.	-	.	Parent=Os04t0197275-00
Chr04	irgsp1_rep	CDS	6637060	6637279	.	-	0	Parent=Os04t0197275-00
Chr04	irgsp1_rep	mRNA	6644261	6646793	.	+	.	ID=Os04t0197350-01;Name=Os04t0197350-01;Locus_id=Os04g0197350;Note=Hypothetical conserved gene.;Transcript_evidence=AK287428 (DDBJ%2C Best hit);ORF_evidence=C8TF43 (UniProt);NIAS_FLcDNA=J043010G23;TENOR=Os04t0197350-01;KEGG=Os04t0197350-01
Chr04	irgsp1_rep	five_prime_UTR	6644261	6645401	.	+	.	Parent=Os04t0197350-01
Chr04	irgsp1_rep	CDS	6645402	6645569	.	+	0	Parent=Os04t0197350-01
Chr04	irgsp1_rep	three_prime_UTR	6645570	6646793	.	+	.	Parent=Os04t0197350-01
Chr04	irgsp1_rep	mRNA	6654365	6655796	.	-	.	ID=Os04t0197500-00;Name=Os04t0197500-00;Locus_id=Os04g0197500;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK361951 (DDBJ);ORF_evidence=A3ARA3 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os04t0197500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	6654426	6655796	.	-	0	Parent=Os04t0197500-00
Chr04	irgsp1_rep	three_prime_UTR	6654365	6654425	.	-	.	Parent=Os04t0197500-00
Chr04	irgsp1_rep	mRNA	6692156	6693010	.	+	.	ID=Os04t0198733-00;Name=Os04t0198733-00;Locus_id=Os04g0198733;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001173785.1 (RefSeq);TENOR=Os04t0198733-00;KEGG=Os04t0198733-00
Chr04	irgsp1_rep	CDS	6692156	6693010	.	+	0	Parent=Os04t0198733-00
Chr04	irgsp1_rep	mRNA	6743557	6744588	.	-	.	ID=Os04t0199600-00;Name=Os04t0199600-00;Locus_id=Os04g0199600;Note=Similar to OSIGBa0146N20.4 protein.;Transcript_evidence=AK375713 (DDBJ);ORF_evidence=Q01M96 (UniProt);InterPro=Gnk2-homologous domain (IPR002902);TENOR=Os04t0199600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	6743557	6744588	.	-	0	Parent=Os04t0199600-00
Chr04	irgsp1_rep	mRNA	6782863	6785655	.	+	.	ID=Os04t0200000-01;Name=Os04t0200000-01;Locus_id=Os04g0200000;Note=Hypothetical protein.;Transcript_evidence=AK242862 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090074I07;TENOR=Os04t0200000-01
Chr04	irgsp1_rep	five_prime_UTR	6782863	6782863	.	+	.	Parent=Os04t0200000-01
Chr04	irgsp1_rep	CDS	6782864	6783181	.	+	0	Parent=Os04t0200000-01
Chr04	irgsp1_rep	three_prime_UTR	6783182	6783654	.	+	.	Parent=Os04t0200000-01
Chr04	irgsp1_rep	three_prime_UTR	6784247	6784325	.	+	.	Parent=Os04t0200000-01
Chr04	irgsp1_rep	three_prime_UTR	6785430	6785655	.	+	.	Parent=Os04t0200000-01
Chr04	irgsp1_rep	mRNA	6834186	6838247	.	-	.	ID=Os04t0200400-00;Name=Os04t0200400-00;Locus_id=Os04g0200400;Note=Similar to OSIGBa0113K06.9 protein.;Transcript_evidence=AK062413 (DDBJ%2C Secondary hit);ORF_evidence=Q01L08 (UniProt);InterPro=Mannose-binding lectin (IPR001229);Expression=AK062413;TENOR=Os04t0200400-00;KEGG=Os04t0200400-00
Chr04	irgsp1_rep	five_prime_UTR	6838242	6838247	.	-	.	Parent=Os04t0200400-00
Chr04	irgsp1_rep	CDS	6838017	6838241	.	-	0	Parent=Os04t0200400-00
Chr04	irgsp1_rep	CDS	6834186	6834527	.	-	0	Parent=Os04t0200400-00
Chr04	irgsp1_rep	mRNA	6869662	6872863	.	+	.	ID=Os04t0200700-01;Name=Os04t0200700-01;Locus_id=Os04g0200700;Note=Hypothetical protein.;Transcript_evidence=AK068428 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J013155D07;TENOR=Os04t0200700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	6869662	6871461	.	+	.	Parent=Os04t0200700-01
Chr04	irgsp1_rep	CDS	6871462	6871758	.	+	0	Parent=Os04t0200700-01
Chr04	irgsp1_rep	three_prime_UTR	6871759	6872481	.	+	.	Parent=Os04t0200700-01
Chr04	irgsp1_rep	three_prime_UTR	6872601	6872863	.	+	.	Parent=Os04t0200700-01
Chr04	irgsp1_rep	mRNA	6890776	6894385	.	-	.	ID=Os04t0201000-00;Name=Os04t0201000-00;Locus_id=Os04g0201000;Note=Similar to OSIGBa0113K06.10 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01L07 (UniProt);TENOR=Os04t0201000-00;KEGG=Os04t0201000-00
Chr04	irgsp1_rep	CDS	6894246	6894385	.	-	0	Parent=Os04t0201000-00
Chr04	irgsp1_rep	CDS	6894090	6894189	.	-	1	Parent=Os04t0201000-00
Chr04	irgsp1_rep	CDS	6890776	6893910	.	-	0	Parent=Os04t0201000-00
Chr04	irgsp1_rep	mRNA	6902893	6909851	.	-	.	ID=Os04t0201200-01;Name=Os04t0201200-01;Locus_id=Os04g0201200;Note=Hypothetical conserved gene.;Transcript_evidence=AK287668 (DDBJ%2C Best hit);ORF_evidence=NP_001052221.1 (RefSeq);GO=Molecular Function: RNA binding (GO:0003723),Molecular Function: binding (GO:0005488);InterPro=Pumilio RNA-binding repeat (IPR001313),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J065118D12;TENOR=Os04t0201200-01;KEGG=Os04t0201200-01
Chr04	irgsp1_rep	five_prime_UTR	6909635	6909851	.	-	.	Parent=Os04t0201200-01
Chr04	irgsp1_rep	CDS	6909362	6909634	.	-	0	Parent=Os04t0201200-01
Chr04	irgsp1_rep	CDS	6905930	6907026	.	-	0	Parent=Os04t0201200-01
Chr04	irgsp1_rep	CDS	6905707	6905848	.	-	1	Parent=Os04t0201200-01
Chr04	irgsp1_rep	CDS	6905452	6905628	.	-	0	Parent=Os04t0201200-01
Chr04	irgsp1_rep	three_prime_UTR	6904564	6905451	.	-	.	Parent=Os04t0201200-01
Chr04	irgsp1_rep	three_prime_UTR	6903767	6903952	.	-	.	Parent=Os04t0201200-01
Chr04	irgsp1_rep	three_prime_UTR	6903289	6903463	.	-	.	Parent=Os04t0201200-01
Chr04	irgsp1_rep	three_prime_UTR	6902893	6903206	.	-	.	Parent=Os04t0201200-01
Chr04	irgsp1_rep	mRNA	6913287	6914107	.	-	.	ID=Os04t0201500-00;Name=Os04t0201500-00;Locus_id=Os04g0201500;Note=Similar to amino acid permease.;Transcript_evidence=CT836518 (DDBJ%2C Best hit);ORF_evidence=NP_001147785.1 (RefSeq);TENOR=Os04t0201500-00;KEGG=Os04t0201500-00
Chr04	irgsp1_rep	five_prime_UTR	6913556	6914107	.	-	.	Parent=Os04t0201500-00
Chr04	irgsp1_rep	CDS	6913424	6913555	.	-	0	Parent=Os04t0201500-00
Chr04	irgsp1_rep	three_prime_UTR	6913287	6913423	.	-	.	Parent=Os04t0201500-00
Chr04	irgsp1_rep	mRNA	6912953	6925360	.	-	.	ID=Os04t0201800-00;Name=Os04t0201800-00;Locus_id=Os04g0201800;Note=Similar to H0512B01.7 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q25AF7 (UniProt);InterPro=Amino acid transporter%2C transmembrane (IPR013057);TENOR=Os04t0201800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	6925021	6925360	.	-	0	Parent=Os04t0201800-00
Chr04	irgsp1_rep	CDS	6916907	6917121	.	-	2	Parent=Os04t0201800-00
Chr04	irgsp1_rep	CDS	6916785	6916808	.	-	0	Parent=Os04t0201800-00
Chr04	irgsp1_rep	CDS	6916180	6916402	.	-	0	Parent=Os04t0201800-00
Chr04	irgsp1_rep	CDS	6915694	6915913	.	-	2	Parent=Os04t0201800-00
Chr04	irgsp1_rep	CDS	6915469	6915604	.	-	1	Parent=Os04t0201800-00
Chr04	irgsp1_rep	CDS	6912953	6913003	.	-	0	Parent=Os04t0201800-00
Chr04	irgsp1_rep	mRNA	6940275	6942746	.	-	.	ID=Os04t0201900-00;Name=Os04t0201900-00;Locus_id=Os04g0201900;CGSNL Gene Symbol=RLCK134;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 134;Oryzabase Gene Symbol Synonym(s)=OsRLCK134%2C OsLecRK1%2C LecRK1;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 134%2C Lectin Receptor Kinase 1;Note=Similar to H0512B01.10 protein.;Transcript_evidence=AK249594 (DDBJ);ORF_evidence=Q25AF4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);Oryzabase=18840;TENOR=Os04t0201900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	6942717	6942746	.	-	.	Parent=Os04t0201900-00
Chr04	irgsp1_rep	CDS	6940275	6942716	.	-	0	Parent=Os04t0201900-00
Chr04	irgsp1_rep	mRNA	6954514	6958420	.	+	.	ID=Os04t0202200-01;Name=Os04t0202200-01;Locus_id=Os04g0202200;Note=Hypothetical gene.;Transcript_evidence=AK121955 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033107M11;Expression=AK121955;TENOR=Os04t0202200-01;KEGG=Os04t0202200-01
Chr04	irgsp1_rep	five_prime_UTR	6954514	6954670	.	+	.	Parent=Os04t0202200-01
Chr04	irgsp1_rep	five_prime_UTR	6955478	6957293	.	+	.	Parent=Os04t0202200-01
Chr04	irgsp1_rep	CDS	6957294	6957512	.	+	0	Parent=Os04t0202200-01
Chr04	irgsp1_rep	three_prime_UTR	6957513	6958420	.	+	.	Parent=Os04t0202200-01
Chr04	irgsp1_rep	mRNA	6954536	6958372	.	+	.	ID=Os04t0202200-02;Name=Os04t0202200-02;Locus_id=Os04g0202200;Note=Hypothetical gene.;Transcript_evidence=AK065145 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013002A21;Expression=AK065145;TENOR=Os04t0202200-02;KEGG=Os04t0202200-02
Chr04	irgsp1_rep	five_prime_UTR	6954536	6954670	.	+	.	Parent=Os04t0202200-02
Chr04	irgsp1_rep	five_prime_UTR	6955478	6955679	.	+	.	Parent=Os04t0202200-02
Chr04	irgsp1_rep	five_prime_UTR	6955778	6957293	.	+	.	Parent=Os04t0202200-02
Chr04	irgsp1_rep	CDS	6957294	6957512	.	+	0	Parent=Os04t0202200-02
Chr04	irgsp1_rep	three_prime_UTR	6957513	6958372	.	+	.	Parent=Os04t0202200-02
Chr04	irgsp1_rep	mRNA	6955489	6957924	.	-	.	ID=Os04t0202300-00;Name=Os04t0202300-00;Locus_id=Os04g0202300;Oryzabase Gene Symbol Synonym(s)=OsLecRK2%2C LecRK2;Oryzabase Gene Name Synonym(s)=Lectin Receptor Kinase 2;Note=Similar to H0512B01.10 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q25AF4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Bulb-type lectin domain (IPR001480),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=19690;TENOR=Os04t0202300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	6956141	6957924	.	-	0	Parent=Os04t0202300-00
Chr04	irgsp1_rep	CDS	6955489	6955771	.	-	1	Parent=Os04t0202300-00
Chr04	irgsp1_rep	mRNA	6966605	6969072	.	-	.	ID=Os04t0202500-01;Name=Os04t0202500-01;Locus_id=Os04g0202500;RAP-DB Gene Symbol Synonym(s)=OsLecRK3;RAP-DB Gene Name Synonym(s)=lectin receptor kinase 3;CGSNL Gene Symbol=RLCK135;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 135;Oryzabase Gene Symbol Synonym(s)=OsRLCK135%2C OsLecRK3%2C LecRK3;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 135%2C Lectin Receptor Kinase 3;Note=Lectin receptor kinase 3%2C Brown planthopper (BPH) resistance;Transcript_evidence=AK249594 (barley);ORF_evidence=Q0JEU6;InterPro=Bulb-type lectin domain superfamily (IPR036426),Bulb-type lectin domain (IPR001480);Manual Curation=April 11%2C 2019;Literature_PMID=30888525;Oryzabase=18841;TENOR=Os04t0202500-00
Chr04	irgsp1_rep	five_prime_UTR	6969040	6969072	.	-	.	Parent=Os04t0202500-01
Chr04	irgsp1_rep	CDS	6967576	6969039	.	-	0	Parent=Os04t0202500-01
Chr04	irgsp1_rep	three_prime_UTR	6966605	6967575	.	-	.	Parent=Os04t0202500-01
Chr04	irgsp1_rep	mRNA	6975301	6979039	.	+	.	ID=Os04t0202700-01;Name=Os04t0202700-01;Locus_id=Os04g0202700;Note=Similar to Avr9/Cf-9 rapidly elicited protein 256 (Fragment).;Transcript_evidence=AK100764 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023119J06;TENOR=Os04t0202700-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	6975301	6975477	.	+	.	Parent=Os04t0202700-01
Chr04	irgsp1_rep	five_prime_UTR	6976827	6977029	.	+	.	Parent=Os04t0202700-01
Chr04	irgsp1_rep	five_prime_UTR	6977098	6978478	.	+	.	Parent=Os04t0202700-01
Chr04	irgsp1_rep	CDS	6978479	6978946	.	+	0	Parent=Os04t0202700-01
Chr04	irgsp1_rep	three_prime_UTR	6978947	6979039	.	+	.	Parent=Os04t0202700-01
Chr04	irgsp1_rep	mRNA	6976798	6979276	.	-	.	ID=Os04t0202800-00;Name=Os04t0202800-00;Locus_id=Os04g0202800;CGSNL Gene Symbol=RLCK136;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 136;Oryzabase Gene Symbol Synonym(s)=OsRLCK136%2C OsLecRK4%2C LecRK4;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 136%2C Lectin Receptor Kinase 4;Note=Similar to H0512B01.12 protein.;Transcript_evidence=AK249594 (DDBJ);ORF_evidence=Q25AG2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18842;TENOR=Os04t0202800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	6976835	6979276	.	-	0	Parent=Os04t0202800-00
Chr04	irgsp1_rep	three_prime_UTR	6976798	6976834	.	-	.	Parent=Os04t0202800-00
Chr04	irgsp1_rep	mRNA	6997842	7002468	.	+	.	ID=Os04t0203300-01;Name=Os04t0203300-01;Locus_id=Os04g0203300;Note=Hypothetical conserved gene.;Transcript_evidence=AK288408 (DDBJ%2C Best hit);ORF_evidence=B9FDN9 (UniProt);NIAS_FLcDNA=J090030J08;TENOR=Os04t0203300-01;KEGG=Os04t0203300-01
Chr04	irgsp1_rep	five_prime_UTR	6997842	6999606	.	+	.	Parent=Os04t0203300-01
Chr04	irgsp1_rep	CDS	6999607	6999969	.	+	0	Parent=Os04t0203300-01
Chr04	irgsp1_rep	three_prime_UTR	6999970	7002468	.	+	.	Parent=Os04t0203300-01
Chr04	irgsp1_rep	mRNA	6997052	7005377	.	-	.	ID=Os04t0203400-00;Name=Os04t0203400-00;Locus_id=Os04g0203400;Oryzabase Gene Symbol Synonym(s)=OsEnS-60;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 60;Note=Similar to OSIGBa0147O06.4 protein.;Transcript_evidence=AK372725 (DDBJ);ORF_evidence=Q01LU1 (UniProt);Oryzabase=18384;TENOR=Os04t0203400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	7005350	7005377	.	-	.	Parent=Os04t0203400-00
Chr04	irgsp1_rep	CDS	7005263	7005349	.	-	0	Parent=Os04t0203400-00
Chr04	irgsp1_rep	CDS	7004479	7004667	.	-	0	Parent=Os04t0203400-00
Chr04	irgsp1_rep	CDS	7003587	7003607	.	-	0	Parent=Os04t0203400-00
Chr04	irgsp1_rep	three_prime_UTR	7003451	7003586	.	-	.	Parent=Os04t0203400-00
Chr04	irgsp1_rep	three_prime_UTR	6998935	6998985	.	-	.	Parent=Os04t0203400-00
Chr04	irgsp1_rep	three_prime_UTR	6998676	6998822	.	-	.	Parent=Os04t0203400-00
Chr04	irgsp1_rep	three_prime_UTR	6997052	6997411	.	-	.	Parent=Os04t0203400-00
Chr04	irgsp1_rep	mRNA	7020913	7022726	.	+	.	ID=Os04t0203450-00;Name=Os04t0203450-00;Locus_id=Os04g0203450;Note=Hypothetical protein.;Transcript_evidence=tplb0058m17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0203450-00
Chr04	irgsp1_rep	five_prime_UTR	7020913	7021046	.	+	.	Parent=Os04t0203450-00
Chr04	irgsp1_rep	CDS	7021047	7021222	.	+	0	Parent=Os04t0203450-00
Chr04	irgsp1_rep	CDS	7021582	7021651	.	+	1	Parent=Os04t0203450-00
Chr04	irgsp1_rep	three_prime_UTR	7021652	7021972	.	+	.	Parent=Os04t0203450-00
Chr04	irgsp1_rep	three_prime_UTR	7022053	7022726	.	+	.	Parent=Os04t0203450-00
Chr04	irgsp1_rep	mRNA	7021347	7022831	.	-	.	ID=Os04t0203600-00;Name=Os04t0203600-00;Locus_id=Os04g0203600;Note=Similar to cDNA clone:002-100-D12%2C full insert sequence.;Transcript_evidence=AK110950 (DDBJ%2C Secondary hit);ORF_evidence=B7F2D5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os04t0203600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	7022800	7022831	.	-	.	Parent=Os04t0203600-00
Chr04	irgsp1_rep	CDS	7022071	7022799	.	-	0	Parent=Os04t0203600-00
Chr04	irgsp1_rep	CDS	7021577	7021984	.	-	0	Parent=Os04t0203600-00
Chr04	irgsp1_rep	three_prime_UTR	7021347	7021576	.	-	.	Parent=Os04t0203600-00
Chr04	irgsp1_rep	mRNA	7024752	7028981	.	-	.	ID=Os04t0204000-00;Name=Os04t0204000-00;Locus_id=Os04g0204000;Note=Similar to H0825G02.2 protein.;Transcript_evidence=AK110892 (DDBJ%2C Secondary hit);ORF_evidence=Q01LT8 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);Expression=AK110892;TENOR=Os04t0204000-00;KEGG=Os04t0204000-00
Chr04	irgsp1_rep	five_prime_UTR	7028948	7028981	.	-	.	Parent=Os04t0204000-00
Chr04	irgsp1_rep	CDS	7028352	7028947	.	-	0	Parent=Os04t0204000-00
Chr04	irgsp1_rep	CDS	7025879	7026333	.	-	1	Parent=Os04t0204000-00
Chr04	irgsp1_rep	CDS	7025112	7025137	.	-	2	Parent=Os04t0204000-00
Chr04	irgsp1_rep	three_prime_UTR	7024752	7025111	.	-	.	Parent=Os04t0204000-00
Chr04	irgsp1_rep	mRNA	7031137	7033453	.	-	.	ID=Os04t0204100-00;Name=Os04t0204100-00;Locus_id=Os04g0204100;Note=Similar to H0825G02.3 protein.;Transcript_evidence=AK106302 (DDBJ%2C Secondary hit);ORF_evidence=Q01LT7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os04t0204100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	7033444	7033453	.	-	.	Parent=Os04t0204100-00
Chr04	irgsp1_rep	CDS	7033410	7033443	.	-	0	Parent=Os04t0204100-00
Chr04	irgsp1_rep	CDS	7032736	7033382	.	-	2	Parent=Os04t0204100-00
Chr04	irgsp1_rep	CDS	7032013	7032397	.	-	0	Parent=Os04t0204100-00
Chr04	irgsp1_rep	CDS	7031851	7031876	.	-	2	Parent=Os04t0204100-00
Chr04	irgsp1_rep	three_prime_UTR	7031432	7031850	.	-	.	Parent=Os04t0204100-00
Chr04	irgsp1_rep	three_prime_UTR	7031402	7031423	.	-	.	Parent=Os04t0204100-00
Chr04	irgsp1_rep	three_prime_UTR	7031137	7031383	.	-	.	Parent=Os04t0204100-00
Chr04	irgsp1_rep	mRNA	7031725	7033396	.	+	.	ID=Os04t0204150-00;Name=Os04t0204150-00;Locus_id=Os04g0204150;Note=Hypothetical protein.;Transcript_evidence=BT070121 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0204150-00
Chr04	irgsp1_rep	five_prime_UTR	7031725	7031859	.	+	.	Parent=Os04t0204150-00
Chr04	irgsp1_rep	five_prime_UTR	7031993	7032465	.	+	.	Parent=Os04t0204150-00
Chr04	irgsp1_rep	five_prime_UTR	7032695	7032696	.	+	.	Parent=Os04t0204150-00
Chr04	irgsp1_rep	CDS	7032697	7033396	.	+	0	Parent=Os04t0204150-00
Chr04	irgsp1_rep	mRNA	7038498	7044184	.	-	.	ID=Os04t0204200-01;Name=Os04t0204200-01;Locus_id=Os04g0204200;Note=Endonuclease/exonuclease/phosphatase domain containing protein.;Transcript_evidence=AK242961 (DDBJ%2C Best hit);ORF_evidence=Q2R4V1 (UniProt);InterPro=Endonuclease/exonuclease/phosphatase (IPR005135);NIAS_FLcDNA=J090090H20;TENOR=Os04t0204200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	7043374	7044184	.	-	.	Parent=Os04t0204200-01
Chr04	irgsp1_rep	CDS	7042813	7043373	.	-	0	Parent=Os04t0204200-01
Chr04	irgsp1_rep	three_prime_UTR	7038498	7042812	.	-	.	Parent=Os04t0204200-01
Chr04	irgsp1_rep	mRNA	7045088	7046466	.	-	.	ID=Os04t0204300-01;Name=Os04t0204300-01;Locus_id=Os04g0204300;Note=Conserved hypothetical protein.;Transcript_evidence=AK107177 (DDBJ%2C Best hit);ORF_evidence=Q7XWL2 (UniProt);NIAS_FLcDNA=002-124-G10;Expression=AK107177;TENOR=Os04t0204300-01;KEGG=Os04t0204300-01
Chr04	irgsp1_rep	five_prime_UTR	7045991	7046466	.	-	.	Parent=Os04t0204300-01
Chr04	irgsp1_rep	five_prime_UTR	7045499	7045614	.	-	.	Parent=Os04t0204300-01
Chr04	irgsp1_rep	CDS	7045088	7045498	.	-	0	Parent=Os04t0204300-01
Chr04	irgsp1_rep	mRNA	7045613	7046460	.	-	.	ID=Os04t0204300-02;Name=Os04t0204300-02;Locus_id=Os04g0204300;Note=Hypothetical protein.;Transcript_evidence=AK109937 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-153-E09;TENOR=Os04t0204300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	7046242	7046460	.	-	0	Parent=Os04t0204300-02
Chr04	irgsp1_rep	three_prime_UTR	7045613	7046241	.	-	.	Parent=Os04t0204300-02
Chr04	irgsp1_rep	mRNA	7046012	7047019	.	+	.	ID=Os04t0204400-01;Name=Os04t0204400-01;Locus_id=Os04g0204400;Note=Hypothetical protein.;Transcript_evidence=AK287477 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J043023G12;TENOR=Os04t0204400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	7046012	7046155	.	+	.	Parent=Os04t0204400-01
Chr04	irgsp1_rep	CDS	7046156	7046584	.	+	0	Parent=Os04t0204400-01
Chr04	irgsp1_rep	three_prime_UTR	7046585	7047019	.	+	.	Parent=Os04t0204400-01
Chr04	irgsp1_rep	mRNA	7077211	7077645	.	-	.	ID=Os04t0204900-00;Name=Os04t0204900-00;Locus_id=Os04g0204900;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os04t0204900-00;KEGG=Os04t0204900-00
Chr04	irgsp1_rep	CDS	7077211	7077645	.	-	0	Parent=Os04t0204900-00
Chr04	irgsp1_rep	mRNA	7078459	7078805	.	-	.	ID=Os04t0205000-00;Name=Os04t0205000-00;Locus_id=Os04g0205000;Note=Similar to Calmodulin.;Transcript_evidence=FP095282 (DDBJ);ORF_evidence=Q9LDQ9 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand-like domain (IPR011992);TENOR=Os04t0205000-00
Chr04	irgsp1_rep	CDS	7078647	7078805	.	-	0	Parent=Os04t0205000-00
Chr04	irgsp1_rep	three_prime_UTR	7078459	7078646	.	-	.	Parent=Os04t0205000-00
Chr04	irgsp1_rep	mRNA	7084823	7085186	.	-	.	ID=Os04t0205101-00;Name=Os04t0205101-00;Locus_id=Os04g0205101;Note=Hypothetical protein.;Transcript_evidence=BT086918 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0205101-00
Chr04	irgsp1_rep	five_prime_UTR	7085186	7085186	.	-	.	Parent=Os04t0205101-00
Chr04	irgsp1_rep	CDS	7084847	7085185	.	-	0	Parent=Os04t0205101-00
Chr04	irgsp1_rep	three_prime_UTR	7084823	7084846	.	-	.	Parent=Os04t0205101-00
Chr04	irgsp1_rep	mRNA	7091053	7092765	.	+	.	ID=Os04t0205200-00;Name=Os04t0205200-00;Locus_id=Os04g0205200;Note=NB-ARC domain containing protein.;Transcript_evidence=AK249130 (DDBJ);ORF_evidence=NP_001052238.2 (RefSeq);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os04t0205200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	7091053	7092765	.	+	0	Parent=Os04t0205200-00
Chr04	irgsp1_rep	mRNA	7121975	7130667	.	+	.	ID=Os04t0206000-00;Name=Os04t0206000-00;Locus_id=Os04g0206000;Note=Similar to H0825G02.4 protein.;Transcript_evidence=BT042772 (DDBJ);ORF_evidence=Q01LY8 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os04t0206000-00;KEGG=Os04t0206000-00
Chr04	irgsp1_rep	CDS	7121975	7122174	.	+	0	Parent=Os04t0206000-00
Chr04	irgsp1_rep	CDS	7128877	7129024	.	+	1	Parent=Os04t0206000-00
Chr04	irgsp1_rep	CDS	7129197	7129581	.	+	0	Parent=Os04t0206000-00
Chr04	irgsp1_rep	CDS	7130294	7130631	.	+	2	Parent=Os04t0206000-00
Chr04	irgsp1_rep	three_prime_UTR	7130632	7130667	.	+	.	Parent=Os04t0206000-00
Chr04	irgsp1_rep	mRNA	7121684	7130618	.	-	.	ID=Os04t0206100-00;Name=Os04t0206100-00;Locus_id=Os04g0206100;Note=Hypothetical protein.;Transcript_evidence=tplb0058m17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0206100-00
Chr04	irgsp1_rep	five_prime_UTR	7130270	7130618	.	-	.	Parent=Os04t0206100-00
Chr04	irgsp1_rep	five_prime_UTR	7129209	7129561	.	-	.	Parent=Os04t0206100-00
Chr04	irgsp1_rep	five_prime_UTR	7128871	7129037	.	-	.	Parent=Os04t0206100-00
Chr04	irgsp1_rep	five_prime_UTR	7122104	7122170	.	-	.	Parent=Os04t0206100-00
Chr04	irgsp1_rep	CDS	7121684	7122103	.	-	0	Parent=Os04t0206100-00
Chr04	irgsp1_rep	mRNA	7136795	7140421	.	-	.	ID=Os04t0206200-01;Name=Os04t0206200-01;Locus_id=Os04g0206200;Note=DNA helicase domain containing protein.;Transcript_evidence=AK067629 (DDBJ%2C Best hit);ORF_evidence=XP_002440902.1 (RefSeq);GO=Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524);InterPro=DNA helicase (IPR003840),DNA helicase PIF1%2C ATP-dependent (IPR010285);NIAS_FLcDNA=J013111L12;TENOR=Os04t0206200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	7138218	7140421	.	-	.	Parent=Os04t0206200-01
Chr04	irgsp1_rep	CDS	7137684	7138217	.	-	0	Parent=Os04t0206200-01
Chr04	irgsp1_rep	three_prime_UTR	7137680	7137683	.	-	.	Parent=Os04t0206200-01
Chr04	irgsp1_rep	three_prime_UTR	7137368	7137484	.	-	.	Parent=Os04t0206200-01
Chr04	irgsp1_rep	three_prime_UTR	7136795	7137235	.	-	.	Parent=Os04t0206200-01
Chr04	irgsp1_rep	mRNA	7136806	7140342	.	-	.	ID=Os04t0206200-02;Name=Os04t0206200-02;Locus_id=Os04g0206200;Note=Similar to Helicase-like protein.;Transcript_evidence=AK098907 (DDBJ%2C Best hit);ORF_evidence=Q9LW42 (UniProt);GO=Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524);InterPro=DNA helicase (IPR003840),DNA helicase PIF1%2C ATP-dependent (IPR010285);NIAS_FLcDNA=J013002F05;TENOR=Os04t0206200-02
Chr04	irgsp1_rep	five_prime_UTR	7138218	7140342	.	-	.	Parent=Os04t0206200-02
Chr04	irgsp1_rep	CDS	7137684	7138217	.	-	0	Parent=Os04t0206200-02
Chr04	irgsp1_rep	three_prime_UTR	7137680	7137683	.	-	.	Parent=Os04t0206200-02
Chr04	irgsp1_rep	three_prime_UTR	7137368	7137484	.	-	.	Parent=Os04t0206200-02
Chr04	irgsp1_rep	three_prime_UTR	7136806	7137235	.	-	.	Parent=Os04t0206200-02
Chr04	irgsp1_rep	mRNA	7141593	7142740	.	+	.	ID=Os04t0206300-00;Name=Os04t0206300-00;Locus_id=Os04g0206300;Note=Similar to OSIGBa0147O06.5 protein.;Transcript_evidence=BT054907 (DDBJ);ORF_evidence=Q01LU0 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase%2C cysteine peptidase active site (IPR000169),Peptidase C1A%2C papain C-terminal (IPR000668),Peptidase C1A%2C papain (IPR013128),Proteinase inhibitor I29%2C cathepsin propeptide (IPR013201);TENOR=Os04t0206300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	7141593	7141612	.	+	.	Parent=Os04t0206300-00
Chr04	irgsp1_rep	CDS	7141613	7142045	.	+	0	Parent=Os04t0206300-00
Chr04	irgsp1_rep	CDS	7142154	7142740	.	+	2	Parent=Os04t0206300-00
Chr04	irgsp1_rep	mRNA	7147666	7152034	.	+	.	ID=Os04t0206350-00;Name=Os04t0206350-00;Locus_id=Os04g0206350;Note=Hypothetical protein.;Transcript_evidence=tplb0058m17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0206350-00
Chr04	irgsp1_rep	five_prime_UTR	7147666	7147751	.	+	.	Parent=Os04t0206350-00
Chr04	irgsp1_rep	five_prime_UTR	7150317	7150354	.	+	.	Parent=Os04t0206350-00
Chr04	irgsp1_rep	CDS	7150355	7150530	.	+	0	Parent=Os04t0206350-00
Chr04	irgsp1_rep	CDS	7150889	7151177	.	+	1	Parent=Os04t0206350-00
Chr04	irgsp1_rep	three_prime_UTR	7151178	7151280	.	+	.	Parent=Os04t0206350-00
Chr04	irgsp1_rep	three_prime_UTR	7151361	7152034	.	+	.	Parent=Os04t0206350-00
Chr04	irgsp1_rep	mRNA	7149713	7150277	.	+	.	ID=Os04t0206401-00;Name=Os04t0206401-00;Locus_id=Os04g0206401;Note=Hypothetical gene.;Transcript_evidence=CT834957 (DDBJ%2C Secondary hit);ORF_evidence=B9FQ15 (UniProt);TENOR=Os04t0206401-00
Chr04	irgsp1_rep	five_prime_UTR	7149713	7149761	.	+	.	Parent=Os04t0206401-00
Chr04	irgsp1_rep	CDS	7149762	7149859	.	+	0	Parent=Os04t0206401-00
Chr04	irgsp1_rep	CDS	7149883	7150264	.	+	1	Parent=Os04t0206401-00
Chr04	irgsp1_rep	three_prime_UTR	7150265	7150277	.	+	.	Parent=Os04t0206401-00
Chr04	irgsp1_rep	mRNA	7150656	7152151	.	-	.	ID=Os04t0206450-01;Name=Os04t0206450-01;Locus_id=Os04g0206450;Note=Similar to cDNA clone:002-100-D12%2C full insert sequence.;Transcript_evidence=AK110950 (DDBJ%2C Best hit);ORF_evidence=B7F2D5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=002-173-H12;Expression=AK110950;TENOR=Os04t0206450-01;KEGG=Os04t0206450-01
Chr04	irgsp1_rep	five_prime_UTR	7151973	7152151	.	-	.	Parent=Os04t0206450-01
Chr04	irgsp1_rep	CDS	7151379	7151972	.	-	0	Parent=Os04t0206450-01
Chr04	irgsp1_rep	CDS	7150879	7151292	.	-	0	Parent=Os04t0206450-01
Chr04	irgsp1_rep	three_prime_UTR	7150656	7150878	.	-	.	Parent=Os04t0206450-01
Chr04	irgsp1_rep	mRNA	7153703	7155950	.	-	.	ID=Os04t0206500-01;Name=Os04t0206500-01;Locus_id=Os04g0206500;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK110892 (DDBJ%2C Best hit);ORF_evidence=D5FPJ0 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=002-173-A01;Expression=AK110892;TENOR=Os04t0206500-01;KEGG=Os04t0206500-01
Chr04	irgsp1_rep	five_prime_UTR	7155917	7155950	.	-	.	Parent=Os04t0206500-01
Chr04	irgsp1_rep	CDS	7154866	7155916	.	-	0	Parent=Os04t0206500-01
Chr04	irgsp1_rep	CDS	7153801	7154138	.	-	2	Parent=Os04t0206500-01
Chr04	irgsp1_rep	three_prime_UTR	7153703	7153800	.	-	.	Parent=Os04t0206500-01
Chr04	irgsp1_rep	mRNA	7156820	7159820	.	-	.	ID=Os04t0206600-01;Name=Os04t0206600-01;Locus_id=Os04g0206600;Oryzabase Gene Symbol Synonym(s)=UDP-GT%2C Os79;Oryzabase Gene Name Synonym(s)=UDP-glucuronyl transferase%2C UDP-glucosyltransferase;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK106302 (DDBJ%2C Best hit);ORF_evidence=Q01LT7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=002-101-C06;Oryzabase=16797;Expression=AK106302;TENOR=Os04t0206600-01;KEGG=Os04t0206600-01
Chr04	irgsp1_rep	five_prime_UTR	7159764	7159820	.	-	.	Parent=Os04t0206600-01
Chr04	irgsp1_rep	CDS	7159083	7159763	.	-	0	Parent=Os04t0206600-01
Chr04	irgsp1_rep	CDS	7157674	7158058	.	-	0	Parent=Os04t0206600-01
Chr04	irgsp1_rep	CDS	7157203	7157537	.	-	2	Parent=Os04t0206600-01
Chr04	irgsp1_rep	three_prime_UTR	7156820	7157202	.	-	.	Parent=Os04t0206600-01
Chr04	irgsp1_rep	mRNA	7157218	7159772	.	+	.	ID=Os04t0206650-00;Name=Os04t0206650-00;Locus_id=Os04g0206650;Note=Hypothetical protein.;Transcript_evidence=tplb0047b20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0206650-00
Chr04	irgsp1_rep	five_prime_UTR	7157218	7157344	.	+	.	Parent=Os04t0206650-00
Chr04	irgsp1_rep	CDS	7157345	7157561	.	+	0	Parent=Os04t0206650-00
Chr04	irgsp1_rep	CDS	7157693	7157787	.	+	2	Parent=Os04t0206650-00
Chr04	irgsp1_rep	three_prime_UTR	7157788	7158046	.	+	.	Parent=Os04t0206650-00
Chr04	irgsp1_rep	three_prime_UTR	7159069	7159772	.	+	.	Parent=Os04t0206650-00
Chr04	irgsp1_rep	mRNA	7163748	7166293	.	+	.	ID=Os04t0206700-01;Name=Os04t0206700-01;Locus_id=Os04g0206700;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK105967 (DDBJ%2C Best hit);ORF_evidence=Q01LY8 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=001-205-E08;Expression=AK105967;TENOR=Os04t0206700-01;KEGG=Os04t0206700-01
Chr04	irgsp1_rep	CDS	7163748	7164497	.	+	0	Parent=Os04t0206700-01
Chr04	irgsp1_rep	CDS	7164600	7164984	.	+	0	Parent=Os04t0206700-01
Chr04	irgsp1_rep	CDS	7165767	7166104	.	+	2	Parent=Os04t0206700-01
Chr04	irgsp1_rep	three_prime_UTR	7166105	7166293	.	+	.	Parent=Os04t0206700-01
Chr04	irgsp1_rep	mRNA	7163782	7166358	.	+	.	ID=Os04t0206700-02;Name=Os04t0206700-02;Locus_id=Os04g0206700;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK103242 (DDBJ%2C Best hit);ORF_evidence=Q01LY8 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J033123I02;Expression=AK103242;TENOR=Os04t0206700-02;KEGG=Os04t0206700-02
Chr04	irgsp1_rep	five_prime_UTR	7163782	7163807	.	+	.	Parent=Os04t0206700-02
Chr04	irgsp1_rep	CDS	7163808	7164497	.	+	0	Parent=Os04t0206700-02
Chr04	irgsp1_rep	CDS	7164600	7164984	.	+	0	Parent=Os04t0206700-02
Chr04	irgsp1_rep	CDS	7165767	7166104	.	+	2	Parent=Os04t0206700-02
Chr04	irgsp1_rep	three_prime_UTR	7166105	7166358	.	+	.	Parent=Os04t0206700-02
Chr04	irgsp1_rep	mRNA	7163837	7165935	.	-	.	ID=Os04t0206850-00;Name=Os04t0206850-00;Locus_id=Os04g0206850;Note=Hypothetical protein.;Transcript_evidence=BT070121 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0206850-00
Chr04	irgsp1_rep	five_prime_UTR	7165743	7165935	.	-	.	Parent=Os04t0206850-00
Chr04	irgsp1_rep	five_prime_UTR	7164516	7164964	.	-	.	Parent=Os04t0206850-00
Chr04	irgsp1_rep	CDS	7163837	7164515	.	-	0	Parent=Os04t0206850-00
Chr04	irgsp1_rep	mRNA	7218440	7221671	.	+	.	ID=Os04t0207501-01;Name=Os04t0207501-01;Locus_id=Os04g0207501;Note=Hypothetical gene.;Transcript_evidence=AK288432 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090033G12;TENOR=Os04t0207501-01;KEGG=Os04t0207501-01
Chr04	irgsp1_rep	five_prime_UTR	7218440	7221339	.	+	.	Parent=Os04t0207501-01
Chr04	irgsp1_rep	CDS	7221340	7221615	.	+	0	Parent=Os04t0207501-01
Chr04	irgsp1_rep	three_prime_UTR	7221616	7221671	.	+	.	Parent=Os04t0207501-01
Chr04	irgsp1_rep	mRNA	7221326	7221880	.	-	.	ID=Os04t0207600-01;Name=Os04t0207600-01;Locus_id=Os04g0207600;CGSNL Gene Symbol=AM39;CGSNL Gene Name=ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 39;Oryzabase Gene Symbol Synonym(s)=AM39;Note=Similar to H0825G02.10 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01LY2 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase%2C cysteine peptidase active site (IPR000169),Peptidase C1A%2C papain C-terminal (IPR000668),Peptidase C1A%2C papain (IPR013128);Oryzabase=8195;TENOR=Os04t0207600-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	7221326	7221880	.	-	0	Parent=Os04t0207600-01
Chr04	irgsp1_rep	mRNA	7250381	7251823	.	+	.	ID=Os04t0208200-01;Name=Os04t0208200-01;Locus_id=Os04g0208200;Oryzabase Gene Symbol Synonym(s)=OsSAG12%2C SAG12;Oryzabase Gene Name Synonym(s)=senescence-associated gene 12;Note=Cysteine proteinase.;Transcript_evidence=AK243501 (DDBJ%2C Best hit);ORF_evidence=Q01LU0 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase%2C cysteine peptidase active site (IPR000169),Peptidase C1A%2C papain C-terminal (IPR000668),Peptidase C1A%2C papain (IPR013128),Proteinase inhibitor I29%2C cathepsin propeptide (IPR013201);NIAS_FLcDNA=J100074J05;Oryzabase=14989;TENOR=Os04t0208200-01;KEGG=Os04t0208200-01
Chr04	irgsp1_rep	five_prime_UTR	7250381	7250471	.	+	.	Parent=Os04t0208200-01
Chr04	irgsp1_rep	CDS	7250472	7250922	.	+	0	Parent=Os04t0208200-01
Chr04	irgsp1_rep	CDS	7251019	7251617	.	+	2	Parent=Os04t0208200-01
Chr04	irgsp1_rep	three_prime_UTR	7251618	7251823	.	+	.	Parent=Os04t0208200-01
Chr04	irgsp1_rep	mRNA	7254765	7256866	.	-	.	ID=Os04t0208400-01;Name=Os04t0208400-01;Locus_id=Os04g0208400;Oryzabase Gene Symbol Synonym(s)=OsFbox189%2C Os_F0133;Oryzabase Gene Name Synonym(s)=F-box protein 189;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK069629 (DDBJ%2C Best hit);ORF_evidence=A3AR41 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),FBD (IPR013596),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023024E15;Oryzabase=16978;Expression=AK069629;TENOR=Os04t0208400-01;KEGG=Os04t0208400-01
Chr04	irgsp1_rep	five_prime_UTR	7256803	7256866	.	-	.	Parent=Os04t0208400-01
Chr04	irgsp1_rep	CDS	7255753	7256802	.	-	0	Parent=Os04t0208400-01
Chr04	irgsp1_rep	CDS	7255474	7255617	.	-	0	Parent=Os04t0208400-01
Chr04	irgsp1_rep	CDS	7254996	7255373	.	-	0	Parent=Os04t0208400-01
Chr04	irgsp1_rep	three_prime_UTR	7254765	7254995	.	-	.	Parent=Os04t0208400-01
Chr04	irgsp1_rep	mRNA	7254929	7256881	.	+	.	ID=Os04t0208425-00;Name=Os04t0208425-00;Locus_id=Os04g0208425;Note=Hypothetical protein.;Transcript_evidence=tplb0028o22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0208425-00
Chr04	irgsp1_rep	five_prime_UTR	7254929	7255381	.	+	.	Parent=Os04t0208425-00
Chr04	irgsp1_rep	CDS	7255382	7255384	.	+	0	Parent=Os04t0208425-00
Chr04	irgsp1_rep	CDS	7255486	7255619	.	+	0	Parent=Os04t0208425-00
Chr04	irgsp1_rep	CDS	7255755	7256881	.	+	1	Parent=Os04t0208425-00
Chr04	irgsp1_rep	mRNA	7258282	7258750	.	+	.	ID=Os04t0208450-01;Name=Os04t0208450-01;Locus_id=Os04g0208450;Note=Hypothetical gene.;Transcript_evidence=AK243519 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100075I17;TENOR=Os04t0208450-01;KEGG=Os04t0208450-01
Chr04	irgsp1_rep	five_prime_UTR	7258282	7258384	.	+	.	Parent=Os04t0208450-01
Chr04	irgsp1_rep	CDS	7258385	7258750	.	+	0	Parent=Os04t0208450-01
Chr04	irgsp1_rep	mRNA	7260561	7262700	.	-	.	ID=Os04t0208500-01;Name=Os04t0208500-01;Locus_id=Os04g0208500;Oryzabase Gene Symbol Synonym(s)=OsFbox190%2C Os_F0204;Oryzabase Gene Name Synonym(s)=F-box protein 190;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK106410 (DDBJ%2C Best hit);ORF_evidence=Q7XWE9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),FBD-like (IPR006566),FBD (IPR013596),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-102-H10;Oryzabase=16979;Expression=AK106410;TENOR=Os04t0208500-01;KEGG=Os04t0208500-01
Chr04	irgsp1_rep	five_prime_UTR	7262614	7262700	.	-	.	Parent=Os04t0208500-01
Chr04	irgsp1_rep	CDS	7261573	7262613	.	-	0	Parent=Os04t0208500-01
Chr04	irgsp1_rep	CDS	7261331	7261474	.	-	0	Parent=Os04t0208500-01
Chr04	irgsp1_rep	CDS	7260861	7261235	.	-	0	Parent=Os04t0208500-01
Chr04	irgsp1_rep	three_prime_UTR	7260561	7260860	.	-	.	Parent=Os04t0208500-01
Chr04	irgsp1_rep	mRNA	7260759	7262637	.	+	.	ID=Os04t0208550-00;Name=Os04t0208550-00;Locus_id=Os04g0208550;Note=Hypothetical protein.;Transcript_evidence=tplb0028o22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0208550-00
Chr04	irgsp1_rep	five_prime_UTR	7260759	7261224	.	+	.	Parent=Os04t0208550-00
Chr04	irgsp1_rep	five_prime_UTR	7261319	7261466	.	+	.	Parent=Os04t0208550-00
Chr04	irgsp1_rep	five_prime_UTR	7261565	7261566	.	+	.	Parent=Os04t0208550-00
Chr04	irgsp1_rep	CDS	7261567	7262637	.	+	0	Parent=Os04t0208550-00
Chr04	irgsp1_rep	mRNA	7265196	7267272	.	-	.	ID=Os04t0208600-01;Name=Os04t0208600-01;Locus_id=Os04g0208600;Oryzabase Gene Symbol Synonym(s)=OsFbox191%2C Os_F0109;Oryzabase Gene Name Synonym(s)=F-box protein 191;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK100900 (DDBJ%2C Best hit);ORF_evidence=Q7XWF0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),FBD-like (IPR006566),FBD (IPR013596),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023131H22;Oryzabase=16980;Expression=AK100900;TENOR=Os04t0208600-01;KEGG=Os04t0208600-01
Chr04	irgsp1_rep	five_prime_UTR	7267224	7267272	.	-	.	Parent=Os04t0208600-01
Chr04	irgsp1_rep	CDS	7266207	7267223	.	-	0	Parent=Os04t0208600-01
Chr04	irgsp1_rep	CDS	7265945	7266088	.	-	0	Parent=Os04t0208600-01
Chr04	irgsp1_rep	CDS	7265399	7265812	.	-	0	Parent=Os04t0208600-01
Chr04	irgsp1_rep	three_prime_UTR	7265196	7265398	.	-	.	Parent=Os04t0208600-01
Chr04	irgsp1_rep	mRNA	7288396	7289312	.	-	.	ID=Os04t0208800-01;Name=Os04t0208800-01;Locus_id=Os04g0208800;Note=Hypothetical protein.;Transcript_evidence=AK120001 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-184-H07;Expression=AK120001;TENOR=Os04t0208800-01;KEGG=Os04t0208800-01
Chr04	irgsp1_rep	five_prime_UTR	7289230	7289312	.	-	.	Parent=Os04t0208800-01
Chr04	irgsp1_rep	CDS	7288912	7289229	.	-	0	Parent=Os04t0208800-01
Chr04	irgsp1_rep	three_prime_UTR	7288396	7288911	.	-	.	Parent=Os04t0208800-01
Chr04	irgsp1_rep	mRNA	7288651	7289315	.	+	.	ID=Os04t0208900-00;Name=Os04t0208900-00;Locus_id=Os04g0208900;Note=Hypothetical conserved gene.;Transcript_evidence=CU406343 (DDBJ%2C Best hit);ORF_evidence=A2XQH6 (UniProt);TENOR=Os04t0208900-00;KEGG=Os04t0208900-00
Chr04	irgsp1_rep	five_prime_UTR	7288651	7288716	.	+	.	Parent=Os04t0208900-00
Chr04	irgsp1_rep	CDS	7288717	7289058	.	+	0	Parent=Os04t0208900-00
Chr04	irgsp1_rep	three_prime_UTR	7289059	7289315	.	+	.	Parent=Os04t0208900-00
Chr04	irgsp1_rep	mRNA	7301574	7312295	.	-	.	ID=Os04t0209200-01;Name=Os04t0209200-01;Locus_id=Os04g0209200;CGSNL Gene Symbol=MRP9;CGSNL Gene Name=MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 9;Oryzabase Gene Symbol Synonym(s)=OsABCC9%2C ABCC9%2C OsMRP9%2C OsABCC14%2C ABCC14;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCC subgroup member 9%2C multidrug resistance-associated protein 9;Note=Similar to MRP-like ABC transporter.;Transcript_evidence=AK100406 (DDBJ%2C Best hit);ORF_evidence=Q8GU65 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);NIAS_FLcDNA=J023087C13;Oryzabase=11960;TENOR=Os04t0209200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	7312295	7312295	.	-	.	Parent=Os04t0209200-01
Chr04	irgsp1_rep	CDS	7310879	7312294	.	-	0	Parent=Os04t0209200-01
Chr04	irgsp1_rep	CDS	7307365	7307685	.	-	0	Parent=Os04t0209200-01
Chr04	irgsp1_rep	CDS	7306583	7306669	.	-	0	Parent=Os04t0209200-01
Chr04	irgsp1_rep	CDS	7305164	7305790	.	-	0	Parent=Os04t0209200-01
Chr04	irgsp1_rep	CDS	7304669	7304833	.	-	0	Parent=Os04t0209200-01
Chr04	irgsp1_rep	CDS	7304268	7304562	.	-	0	Parent=Os04t0209200-01
Chr04	irgsp1_rep	CDS	7303725	7303939	.	-	2	Parent=Os04t0209200-01
Chr04	irgsp1_rep	CDS	7303161	7303466	.	-	0	Parent=Os04t0209200-01
Chr04	irgsp1_rep	CDS	7302992	7303055	.	-	0	Parent=Os04t0209200-01
Chr04	irgsp1_rep	CDS	7302093	7302332	.	-	2	Parent=Os04t0209200-01
Chr04	irgsp1_rep	CDS	7301817	7301917	.	-	2	Parent=Os04t0209200-01
Chr04	irgsp1_rep	three_prime_UTR	7301574	7301816	.	-	.	Parent=Os04t0209200-01
Chr04	irgsp1_rep	mRNA	7317239	7325788	.	-	.	ID=Os04t0209300-01;Name=Os04t0209300-01;Locus_id=Os04g0209300;CGSNL Gene Symbol=MRP10;CGSNL Gene Name=MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 10;Oryzabase Gene Symbol Synonym(s)=OsABCC10%2C OsMRP10;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCC subgroup member 10%2C multidrug resistance-associated protein 10;Note=Similar to Glutathione-conjugate transporter AtMRP4.;Transcript_evidence=AK120122 (DDBJ%2C Best hit);ORF_evidence=Q8GU66 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);NIAS_FLcDNA=J013026A05;Oryzabase=11961;Expression=AK120122;TENOR=Os04t0209300-01;KEGG=Os04t0209300-01
Chr04	irgsp1_rep	five_prime_UTR	7325673	7325788	.	-	.	Parent=Os04t0209300-01
Chr04	irgsp1_rep	CDS	7323576	7325672	.	-	0	Parent=Os04t0209300-01
Chr04	irgsp1_rep	CDS	7322018	7322338	.	-	0	Parent=Os04t0209300-01
Chr04	irgsp1_rep	CDS	7321089	7321175	.	-	0	Parent=Os04t0209300-01
Chr04	irgsp1_rep	CDS	7320143	7320778	.	-	0	Parent=Os04t0209300-01
Chr04	irgsp1_rep	CDS	7319892	7320056	.	-	0	Parent=Os04t0209300-01
Chr04	irgsp1_rep	CDS	7319468	7319762	.	-	0	Parent=Os04t0209300-01
Chr04	irgsp1_rep	CDS	7318716	7318930	.	-	2	Parent=Os04t0209300-01
Chr04	irgsp1_rep	CDS	7318315	7318620	.	-	0	Parent=Os04t0209300-01
Chr04	irgsp1_rep	CDS	7318151	7318214	.	-	0	Parent=Os04t0209300-01
Chr04	irgsp1_rep	CDS	7317822	7318061	.	-	2	Parent=Os04t0209300-01
Chr04	irgsp1_rep	CDS	7317551	7317663	.	-	2	Parent=Os04t0209300-01
Chr04	irgsp1_rep	three_prime_UTR	7317239	7317550	.	-	.	Parent=Os04t0209300-01
Chr04	irgsp1_rep	mRNA	7317838	7318217	.	+	.	ID=Os04t0209450-00;Name=Os04t0209450-00;Locus_id=Os04g0209450;Note=Hypothetical protein.;Transcript_evidence=tplb0011b09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0209450-00
Chr04	irgsp1_rep	CDS	7317838	7318101	.	+	0	Parent=Os04t0209450-00
Chr04	irgsp1_rep	three_prime_UTR	7318102	7318217	.	+	.	Parent=Os04t0209450-00
Chr04	irgsp1_rep	mRNA	7423769	7427851	.	+	.	ID=Os04t0210250-01;Name=Os04t0210250-01;Locus_id=Os04g0210250;Note=Hypothetical gene.;Transcript_evidence=AK287455 (DDBJ%2C Best hit);ORF_evidence=Q7XC16 (UniProt);NIAS_FLcDNA=J043019E16;TENOR=Os04t0210250-01;KEGG=Os04t0210250-01
Chr04	irgsp1_rep	five_prime_UTR	7423769	7424222	.	+	.	Parent=Os04t0210250-01
Chr04	irgsp1_rep	five_prime_UTR	7425281	7426775	.	+	.	Parent=Os04t0210250-01
Chr04	irgsp1_rep	CDS	7426776	7427408	.	+	0	Parent=Os04t0210250-01
Chr04	irgsp1_rep	three_prime_UTR	7427409	7427851	.	+	.	Parent=Os04t0210250-01
Chr04	irgsp1_rep	mRNA	7427891	7430947	.	+	.	ID=Os04t0210700-00;Name=Os04t0210700-00;Locus_id=Os04g0210700;Note=Similar to OSIGBa0114M03.3 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01M70 (UniProt);TENOR=Os04t0210700-00;KEGG=Os04t0210700-00
Chr04	irgsp1_rep	CDS	7427891	7427962	.	+	0	Parent=Os04t0210700-00
Chr04	irgsp1_rep	CDS	7428245	7428331	.	+	0	Parent=Os04t0210700-00
Chr04	irgsp1_rep	CDS	7428416	7428508	.	+	0	Parent=Os04t0210700-00
Chr04	irgsp1_rep	CDS	7428596	7428658	.	+	0	Parent=Os04t0210700-00
Chr04	irgsp1_rep	CDS	7430072	7430149	.	+	0	Parent=Os04t0210700-00
Chr04	irgsp1_rep	CDS	7430236	7430334	.	+	0	Parent=Os04t0210700-00
Chr04	irgsp1_rep	CDS	7430729	7430947	.	+	0	Parent=Os04t0210700-00
Chr04	irgsp1_rep	mRNA	7432685	7432978	.	+	.	ID=Os04t0210800-00;Name=Os04t0210800-00;Locus_id=Os04g0210800;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8AVC4 (UniProt);TENOR=Os04t0210800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	7432685	7432978	.	+	0	Parent=Os04t0210800-00
Chr04	irgsp1_rep	mRNA	7478045	7479178	.	-	.	ID=Os04t0211700-00;Name=Os04t0211700-00;Locus_id=Os04g0211700;Note=Similar to OSIGBa0114M03.5 protein.;Transcript_evidence=AK331225 (DDBJ);ORF_evidence=Q01M68 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Heat shock protein Hsp70 (IPR001023),Heat shock protein 70 (IPR013126),Heat shock protein 70%2C conserved site (IPR018181);TENOR=Os04t0211700-00
Chr04	irgsp1_rep	CDS	7478045	7479178	.	-	0	Parent=Os04t0211700-00
Chr04	irgsp1_rep	mRNA	7492471	7493863	.	-	.	ID=Os04t0211900-01;Name=Os04t0211900-01;Locus_id=Os04g0211900;Note=Protein of unknown function DUF1677%2C Oryza sativa family protein.;Transcript_evidence=AK119924 (DDBJ%2C Best hit);ORF_evidence=Q01M67 (UniProt);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);NIAS_FLcDNA=002-183-G11;Expression=AK119924;TENOR=Os04t0211900-01;KEGG=Os04t0211900-01
Chr04	irgsp1_rep	five_prime_UTR	7493781	7493863	.	-	.	Parent=Os04t0211900-01
Chr04	irgsp1_rep	CDS	7492494	7493780	.	-	0	Parent=Os04t0211900-01
Chr04	irgsp1_rep	three_prime_UTR	7492471	7492493	.	-	.	Parent=Os04t0211900-01
Chr04	irgsp1_rep	mRNA	7504023	7517781	.	+	.	ID=Os04t0212200-01;Name=Os04t0212200-01;Locus_id=Os04g0212200;Note=Similar to protein binding protein.;Transcript_evidence=AK242739 (DDBJ%2C Best hit);ORF_evidence=XP_002869986.1 (RefSeq);InterPro=Vacuolar protein sorting-associated protein 54 (IPR019515);NIAS_FLcDNA=J090049F15;TENOR=Os04t0212200-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	7504023	7504104	.	+	.	Parent=Os04t0212200-01
Chr04	irgsp1_rep	CDS	7504105	7504875	.	+	0	Parent=Os04t0212200-01
Chr04	irgsp1_rep	CDS	7506455	7506517	.	+	0	Parent=Os04t0212200-01
Chr04	irgsp1_rep	CDS	7507116	7507195	.	+	0	Parent=Os04t0212200-01
Chr04	irgsp1_rep	CDS	7507578	7507695	.	+	1	Parent=Os04t0212200-01
Chr04	irgsp1_rep	CDS	7508473	7508547	.	+	0	Parent=Os04t0212200-01
Chr04	irgsp1_rep	CDS	7508960	7509172	.	+	0	Parent=Os04t0212200-01
Chr04	irgsp1_rep	three_prime_UTR	7509173	7509303	.	+	.	Parent=Os04t0212200-01
Chr04	irgsp1_rep	three_prime_UTR	7510114	7510367	.	+	.	Parent=Os04t0212200-01
Chr04	irgsp1_rep	three_prime_UTR	7511050	7511221	.	+	.	Parent=Os04t0212200-01
Chr04	irgsp1_rep	three_prime_UTR	7511323	7511406	.	+	.	Parent=Os04t0212200-01
Chr04	irgsp1_rep	three_prime_UTR	7512128	7512444	.	+	.	Parent=Os04t0212200-01
Chr04	irgsp1_rep	three_prime_UTR	7512676	7512829	.	+	.	Parent=Os04t0212200-01
Chr04	irgsp1_rep	three_prime_UTR	7514309	7514390	.	+	.	Parent=Os04t0212200-01
Chr04	irgsp1_rep	three_prime_UTR	7514496	7514575	.	+	.	Parent=Os04t0212200-01
Chr04	irgsp1_rep	three_prime_UTR	7514695	7514856	.	+	.	Parent=Os04t0212200-01
Chr04	irgsp1_rep	three_prime_UTR	7515144	7515211	.	+	.	Parent=Os04t0212200-01
Chr04	irgsp1_rep	three_prime_UTR	7516495	7516575	.	+	.	Parent=Os04t0212200-01
Chr04	irgsp1_rep	three_prime_UTR	7516707	7516952	.	+	.	Parent=Os04t0212200-01
Chr04	irgsp1_rep	three_prime_UTR	7517304	7517781	.	+	.	Parent=Os04t0212200-01
Chr04	irgsp1_rep	mRNA	7521494	7522034	.	+	.	ID=Os04t0212450-00;Name=Os04t0212450-00;Locus_id=Os04g0212450;Oryzabase Gene Symbol Synonym(s)=OsRR42%2C Rra15%2C OsRR13%2C OsRRA15;Oryzabase Gene Name Synonym(s)=response regulator 42%2C A-type response regulator 15%2C response regulator 13%2C A-type RR 15;Note=Hypothetical conserved gene.;Transcript_evidence=AK375981 (DDBJ);ORF_evidence=NP_001052257.2 (RefSeq);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: two-component response regulator activity (GO:0000156);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),CheY-like superfamily (IPR011006);Oryzabase=9837;TENOR=Os04t0212450-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	7521494	7521495	.	+	.	Parent=Os04t0212450-00
Chr04	irgsp1_rep	CDS	7521496	7521708	.	+	0	Parent=Os04t0212450-00
Chr04	irgsp1_rep	CDS	7521849	7522034	.	+	0	Parent=Os04t0212450-00
Chr04	irgsp1_rep	mRNA	7546093	7546626	.	+	.	ID=Os04t0212700-00;Name=Os04t0212700-00;Locus_id=Os04g0212700;Note=Similar to Histone H2A.;Transcript_evidence=FP101467 (DDBJ);ORF_evidence=A2YNE9 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H2A (IPR002119),Histone core (IPR007125),Histone-fold (IPR009072);TENOR=Os04t0212700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	7546093	7546623	.	+	0	Parent=Os04t0212700-00
Chr04	irgsp1_rep	three_prime_UTR	7546624	7546626	.	+	.	Parent=Os04t0212700-00
Chr04	irgsp1_rep	mRNA	7553316	7554203	.	-	.	ID=Os04t0213100-01;Name=Os04t0213100-01;Locus_id=Os04g0213100;RAP-DB Gene Symbol Synonym(s)=OsHFP;RAP-DB Gene Name Synonym(s)=hemopexin fold protein;CGSNL Gene Symbol=HFP;CGSNL Gene Name=HEMOPEXIN FOLD PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsHFP;Oryzabase Gene Name Synonym(s)=hemopexin fold protein;Note=Hemopexin fold protein%2C Chlorophyll degradation%2C Anther development;Transcript_evidence=JX233809 (IR-64%2C indica);ORF_evidence=J7K016 (IR-64%2C indica),Q7XP96;InterPro=Hemopexin-like domain (IPR000585),Hemopexin-like repeats (IPR018487);Manual Curation=March 3%2C 2017;Literature_PMID=22943852,22465006;Oryzabase=10417;TENOR=Os04t0213100-00
Chr04	irgsp1_rep	CDS	7553316	7554203	.	-	0	Parent=Os04t0213100-01
Chr04	irgsp1_rep	mRNA	7620565	7621389	.	-	.	ID=Os04t0213800-00;Name=Os04t0213800-00;Locus_id=Os04g0213800;CGSNL Gene Symbol=RLCK137;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 137;Oryzabase Gene Symbol Synonym(s)=OsRLCK137;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 137;Note=Similar to Bacterial blight resistance protein XA26.;Transcript_evidence=DQ119307 (DDBJ);ORF_evidence=Q2EZ14 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18843;TENOR=Os04t0213800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	7620565	7621389	.	-	0	Parent=Os04t0213800-00
Chr04	irgsp1_rep	mRNA	7868882	7869480	.	+	.	ID=Os04t0217500-00;Name=Os04t0217500-00;Locus_id=Os04g0217500;Note=Hypothetical conserved gene.;Transcript_evidence=CT836453 (DDBJ%2C Secondary hit);ORF_evidence=Q688J8 (UniProt);TENOR=Os04t0217500-00;KEGG=Os04t0217500-00
Chr04	irgsp1_rep	five_prime_UTR	7868882	7869039	.	+	.	Parent=Os04t0217500-00
Chr04	irgsp1_rep	CDS	7869040	7869163	.	+	0	Parent=Os04t0217500-00
Chr04	irgsp1_rep	CDS	7869191	7869372	.	+	2	Parent=Os04t0217500-00
Chr04	irgsp1_rep	three_prime_UTR	7869373	7869480	.	+	.	Parent=Os04t0217500-00
Chr04	irgsp1_rep	mRNA	7873470	7876305	.	-	.	ID=Os04t0217600-01;Name=Os04t0217600-01;Locus_id=Os04g0217600;Note=Hypothetical gene.;Transcript_evidence=AK103331 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033125N17;Expression=AK103331;TENOR=Os04t0217600-01;KEGG=Os04t0217600-01
Chr04	irgsp1_rep	CDS	7875880	7876305	.	-	0	Parent=Os04t0217600-01
Chr04	irgsp1_rep	three_prime_UTR	7875361	7875879	.	-	.	Parent=Os04t0217600-01
Chr04	irgsp1_rep	three_prime_UTR	7873470	7875185	.	-	.	Parent=Os04t0217600-01
Chr04	irgsp1_rep	mRNA	7877462	7883443	.	+	.	ID=Os04t0217900-01;Name=Os04t0217900-01;Locus_id=Os04g0217900;Note=Similar to TRAF-type zinc finger family protein.;Transcript_evidence=AK289068 (DDBJ%2C Best hit);ORF_evidence=Q2QWV7 (UniProt);NIAS_FLcDNA=J090094D21;TENOR=Os04t0217900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	7877462	7877915	.	+	.	Parent=Os04t0217900-01
Chr04	irgsp1_rep	five_prime_UTR	7878879	7881966	.	+	.	Parent=Os04t0217900-01
Chr04	irgsp1_rep	CDS	7881967	7882497	.	+	0	Parent=Os04t0217900-01
Chr04	irgsp1_rep	three_prime_UTR	7882498	7882885	.	+	.	Parent=Os04t0217900-01
Chr04	irgsp1_rep	three_prime_UTR	7883056	7883443	.	+	.	Parent=Os04t0217900-01
Chr04	irgsp1_rep	mRNA	7893521	7901861	.	-	.	ID=Os04t0218100-01;Name=Os04t0218100-01;Locus_id=Os04g0218100;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK066074 (DDBJ%2C Best hit);ORF_evidence=Q7XX33 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013057F06;Expression=AK066074;TENOR=Os04t0218100-01;KEGG=Os04t0218100-01
Chr04	irgsp1_rep	five_prime_UTR	7901409	7901861	.	-	.	Parent=Os04t0218100-01
Chr04	irgsp1_rep	five_prime_UTR	7900248	7900444	.	-	.	Parent=Os04t0218100-01
Chr04	irgsp1_rep	five_prime_UTR	7896339	7896378	.	-	.	Parent=Os04t0218100-01
Chr04	irgsp1_rep	CDS	7893666	7896338	.	-	0	Parent=Os04t0218100-01
Chr04	irgsp1_rep	three_prime_UTR	7893521	7893665	.	-	.	Parent=Os04t0218100-01
Chr04	irgsp1_rep	mRNA	7893523	7897863	.	-	.	ID=Os04t0218100-02;Name=Os04t0218100-02;Locus_id=Os04g0218100;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK122044 (DDBJ%2C Best hit);ORF_evidence=Q7XX33 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033113M07;Expression=AK122044;TENOR=Os04t0218100-02;KEGG=Os04t0218100-02
Chr04	irgsp1_rep	five_prime_UTR	7896339	7897863	.	-	.	Parent=Os04t0218100-02
Chr04	irgsp1_rep	CDS	7893666	7896338	.	-	0	Parent=Os04t0218100-02
Chr04	irgsp1_rep	three_prime_UTR	7893523	7893665	.	-	.	Parent=Os04t0218100-02
Chr04	irgsp1_rep	mRNA	7907327	7910914	.	+	.	ID=Os04t0218350-01;Name=Os04t0218350-01;Locus_id=Os04g0218350;Note=Similar to cDNA%2C clone: J075169H23%2C full insert sequence.;Transcript_evidence=AK287829 (DDBJ%2C Best hit);ORF_evidence=B7F9C5 (UniProt);NIAS_FLcDNA=J065185I06;TENOR=Os04t0218350-01;KEGG=Os04t0218350-01
Chr04	irgsp1_rep	five_prime_UTR	7907327	7907657	.	+	.	Parent=Os04t0218350-01
Chr04	irgsp1_rep	CDS	7907658	7908200	.	+	0	Parent=Os04t0218350-01
Chr04	irgsp1_rep	three_prime_UTR	7908201	7908415	.	+	.	Parent=Os04t0218350-01
Chr04	irgsp1_rep	three_prime_UTR	7909447	7910914	.	+	.	Parent=Os04t0218350-01
Chr04	irgsp1_rep	mRNA	7914163	7914802	.	+	.	ID=Os04t0218400-00;Name=Os04t0218400-00;Locus_id=Os04g0218400;Note=Similar to ankyrin protein kinase-like.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001152283.1 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Protein of unknown function DUF248%2C methyltransferase putative (IPR004159);TENOR=Os04t0218400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	7914163	7914305	.	+	0	Parent=Os04t0218400-00
Chr04	irgsp1_rep	CDS	7914394	7914471	.	+	1	Parent=Os04t0218400-00
Chr04	irgsp1_rep	CDS	7914583	7914802	.	+	1	Parent=Os04t0218400-00
Chr04	irgsp1_rep	mRNA	7920042	7920743	.	+	.	ID=Os04t0218600-01;Name=Os04t0218600-01;Locus_id=Os04g0218600;Note=Conserved hypothetical protein.;Transcript_evidence=AK062873 (DDBJ%2C Best hit);ORF_evidence=B8AVD3 (UniProt);NIAS_FLcDNA=001-108-C09;TENOR=Os04t0218600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	7920042	7920329	.	+	.	Parent=Os04t0218600-01
Chr04	irgsp1_rep	CDS	7920330	7920710	.	+	0	Parent=Os04t0218600-01
Chr04	irgsp1_rep	three_prime_UTR	7920711	7920743	.	+	.	Parent=Os04t0218600-01
Chr04	irgsp1_rep	mRNA	7920068	7927561	.	+	.	ID=Os04t0218600-02;Name=Os04t0218600-02;Locus_id=Os04g0218600;Note=Conserved hypothetical protein.;Transcript_evidence=AK103472 (DDBJ%2C Best hit);ORF_evidence=Q7XP97 (UniProt);NIAS_FLcDNA=J033130B05;TENOR=Os04t0218600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	7920068	7920220	.	+	.	Parent=Os04t0218600-02
Chr04	irgsp1_rep	CDS	7920221	7920286	.	+	0	Parent=Os04t0218600-02
Chr04	irgsp1_rep	CDS	7920378	7920599	.	+	0	Parent=Os04t0218600-02
Chr04	irgsp1_rep	CDS	7920676	7920786	.	+	0	Parent=Os04t0218600-02
Chr04	irgsp1_rep	CDS	7920873	7920923	.	+	0	Parent=Os04t0218600-02
Chr04	irgsp1_rep	CDS	7921021	7921121	.	+	0	Parent=Os04t0218600-02
Chr04	irgsp1_rep	CDS	7921299	7921387	.	+	1	Parent=Os04t0218600-02
Chr04	irgsp1_rep	CDS	7922968	7923101	.	+	2	Parent=Os04t0218600-02
Chr04	irgsp1_rep	CDS	7923192	7923398	.	+	0	Parent=Os04t0218600-02
Chr04	irgsp1_rep	CDS	7923513	7923591	.	+	0	Parent=Os04t0218600-02
Chr04	irgsp1_rep	CDS	7923994	7924088	.	+	2	Parent=Os04t0218600-02
Chr04	irgsp1_rep	CDS	7924172	7924258	.	+	0	Parent=Os04t0218600-02
Chr04	irgsp1_rep	CDS	7924337	7924411	.	+	0	Parent=Os04t0218600-02
Chr04	irgsp1_rep	CDS	7924490	7924537	.	+	0	Parent=Os04t0218600-02
Chr04	irgsp1_rep	CDS	7925627	7925722	.	+	0	Parent=Os04t0218600-02
Chr04	irgsp1_rep	CDS	7925821	7926050	.	+	0	Parent=Os04t0218600-02
Chr04	irgsp1_rep	CDS	7926443	7927561	.	+	1	Parent=Os04t0218600-02
Chr04	irgsp1_rep	mRNA	7935869	7938887	.	+	.	ID=Os04t0218701-00;Name=Os04t0218701-00;Locus_id=Os04g0218701;Note=Hypothetical conserved gene.;Transcript_evidence=BT039256 (DDBJ);ORF_evidence=B8AVD3 (UniProt);TENOR=Os04t0218701-00;KEGG=Os04t0218701-00
Chr04	irgsp1_rep	CDS	7935869	7935949	.	+	0	Parent=Os04t0218701-00
Chr04	irgsp1_rep	CDS	7936417	7936488	.	+	0	Parent=Os04t0218701-00
Chr04	irgsp1_rep	CDS	7936571	7936676	.	+	0	Parent=Os04t0218701-00
Chr04	irgsp1_rep	CDS	7936754	7936817	.	+	2	Parent=Os04t0218701-00
Chr04	irgsp1_rep	CDS	7937477	7937605	.	+	1	Parent=Os04t0218701-00
Chr04	irgsp1_rep	CDS	7937693	7937810	.	+	1	Parent=Os04t0218701-00
Chr04	irgsp1_rep	CDS	7938297	7938373	.	+	0	Parent=Os04t0218701-00
Chr04	irgsp1_rep	CDS	7938494	7938887	.	+	1	Parent=Os04t0218701-00
Chr04	irgsp1_rep	mRNA	7947573	7949742	.	+	.	ID=Os04t0218900-01;Name=Os04t0218900-01;Locus_id=Os04g0218900;Note=Similar to TRAF-type zinc finger family protein.;Transcript_evidence=AK071049 (DDBJ%2C Best hit);ORF_evidence=Q2QWV7 (UniProt);GO=Biological Process: protein ubiquitination (GO:0016567),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C TRAF-type (IPR001293),TRAF-like (IPR008974),Seven In Absentia Homolog-type (IPR013323);NIAS_FLcDNA=J023077B16;TENOR=Os04t0218900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	7947573	7947735	.	+	.	Parent=Os04t0218900-01
Chr04	irgsp1_rep	five_prime_UTR	7948257	7948266	.	+	.	Parent=Os04t0218900-01
Chr04	irgsp1_rep	CDS	7948267	7949184	.	+	0	Parent=Os04t0218900-01
Chr04	irgsp1_rep	CDS	7949355	7949453	.	+	0	Parent=Os04t0218900-01
Chr04	irgsp1_rep	three_prime_UTR	7949454	7949742	.	+	.	Parent=Os04t0218900-01
Chr04	irgsp1_rep	mRNA	7956119	7960456	.	-	.	ID=Os04t0219000-01;Name=Os04t0219000-01;Locus_id=Os04g0219000;Note=Similar to cDNA%2C clone: J075169H23%2C full insert sequence.;Transcript_evidence=AK287756 (DDBJ%2C Best hit);ORF_evidence=B7F9C5 (UniProt);NIAS_FLcDNA=J065161D16;TENOR=Os04t0219000-01;KEGG=Os04t0219000-01
Chr04	irgsp1_rep	five_prime_UTR	7960126	7960456	.	-	.	Parent=Os04t0219000-01
Chr04	irgsp1_rep	CDS	7959583	7960125	.	-	0	Parent=Os04t0219000-01
Chr04	irgsp1_rep	three_prime_UTR	7956119	7959582	.	-	.	Parent=Os04t0219000-01
Chr04	irgsp1_rep	mRNA	7955827	7960099	.	-	.	ID=Os04t0219000-02;Name=Os04t0219000-02;Locus_id=Os04g0219000;Note=Similar to cDNA%2C clone: J075169H23%2C full insert sequence.;Transcript_evidence=AK071668 (DDBJ%2C Best hit);ORF_evidence=B7F9C5 (UniProt);NIAS_FLcDNA=J023107M04;TENOR=Os04t0219000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	7960099	7960099	.	-	.	Parent=Os04t0219000-02
Chr04	irgsp1_rep	CDS	7959583	7960098	.	-	0	Parent=Os04t0219000-02
Chr04	irgsp1_rep	three_prime_UTR	7959317	7959582	.	-	.	Parent=Os04t0219000-02
Chr04	irgsp1_rep	three_prime_UTR	7957040	7957100	.	-	.	Parent=Os04t0219000-02
Chr04	irgsp1_rep	three_prime_UTR	7956313	7956400	.	-	.	Parent=Os04t0219000-02
Chr04	irgsp1_rep	three_prime_UTR	7955827	7956239	.	-	.	Parent=Os04t0219000-02
Chr04	irgsp1_rep	mRNA	7961023	7964447	.	-	.	ID=Os04t0219200-01;Name=Os04t0219200-01;Locus_id=Os04g0219200;Note=Hypothetical conserved gene.;Transcript_evidence=AK106716 (DDBJ%2C Best hit);ORF_evidence=B9FDU8 (UniProt);NIAS_FLcDNA=002-114-F12;Expression=AK106716;TENOR=Os04t0219200-01;KEGG=Os04t0219200-01
Chr04	irgsp1_rep	five_prime_UTR	7964116	7964447	.	-	.	Parent=Os04t0219200-01
Chr04	irgsp1_rep	CDS	7963927	7964115	.	-	0	Parent=Os04t0219200-01
Chr04	irgsp1_rep	three_prime_UTR	7963816	7963926	.	-	.	Parent=Os04t0219200-01
Chr04	irgsp1_rep	three_prime_UTR	7963392	7963457	.	-	.	Parent=Os04t0219200-01
Chr04	irgsp1_rep	three_prime_UTR	7962162	7962327	.	-	.	Parent=Os04t0219200-01
Chr04	irgsp1_rep	three_prime_UTR	7961023	7961527	.	-	.	Parent=Os04t0219200-01
Chr04	irgsp1_rep	mRNA	7973330	7973557	.	-	.	ID=Os04t0219550-00;Name=Os04t0219550-00;Locus_id=Os04g0219550;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R8J7 (UniProt);TENOR=Os04t0219550-00;KEGG=Os04t0219550-00
Chr04	irgsp1_rep	CDS	7973330	7973557	.	-	0	Parent=Os04t0219550-00
Chr04	irgsp1_rep	mRNA	7973907	7983880	.	-	.	ID=Os04t0219600-01;Name=Os04t0219600-01;Locus_id=Os04g0219600;Oryzabase Gene Symbol Synonym(s)=rNBS17;Oryzabase Gene Name Synonym(s)=NBS-LRR protein rNBS17;Note=Similar to NBS-LRR protein (Fragment).;Transcript_evidence=AK067819 (DDBJ%2C Best hit);ORF_evidence=Q8LL84 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013118K22;Oryzabase=15946;Expression=AK067819;TENOR=Os04t0219600-01;KEGG=Os04t0219600-01
Chr04	irgsp1_rep	five_prime_UTR	7983786	7983880	.	-	.	Parent=Os04t0219600-01
Chr04	irgsp1_rep	five_prime_UTR	7976063	7976067	.	-	.	Parent=Os04t0219600-01
Chr04	irgsp1_rep	CDS	7973957	7976062	.	-	0	Parent=Os04t0219600-01
Chr04	irgsp1_rep	three_prime_UTR	7973907	7973956	.	-	.	Parent=Os04t0219600-01
Chr04	irgsp1_rep	mRNA	7981887	7982772	.	+	.	ID=Os04t0219700-00;Name=Os04t0219700-00;Locus_id=Os04g0219700;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7X6D1 (UniProt);TENOR=Os04t0219700-00
Chr04	irgsp1_rep	CDS	7981887	7982043	.	+	0	Parent=Os04t0219700-00
Chr04	irgsp1_rep	CDS	7982093	7982327	.	+	2	Parent=Os04t0219700-00
Chr04	irgsp1_rep	CDS	7982505	7982772	.	+	1	Parent=Os04t0219700-00
Chr04	irgsp1_rep	mRNA	7988583	8000337	.	+	.	ID=Os04t0219800-01;Name=Os04t0219800-01;Locus_id=Os04g0219800;Note=Conserved hypothetical protein.;Transcript_evidence=AK062423 (DDBJ%2C Best hit);ORF_evidence=B9FDV2 (UniProt);NIAS_FLcDNA=001-102-G10;TENOR=Os04t0219800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	7988583	7988746	.	+	.	Parent=Os04t0219800-01
Chr04	irgsp1_rep	CDS	7988747	7988762	.	+	0	Parent=Os04t0219800-01
Chr04	irgsp1_rep	CDS	7988974	7989066	.	+	2	Parent=Os04t0219800-01
Chr04	irgsp1_rep	CDS	8000131	8000174	.	+	2	Parent=Os04t0219800-01
Chr04	irgsp1_rep	three_prime_UTR	8000175	8000337	.	+	.	Parent=Os04t0219800-01
Chr04	irgsp1_rep	mRNA	8009023	8018541	.	+	.	ID=Os04t0220300-01;Name=Os04t0220300-01;Locus_id=Os04g0220300;CGSNL Gene Symbol=WAK30/31;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 30/31;Oryzabase Gene Symbol Synonym(s)=OsWAK30%2C OsWAK30/OsWAK31%2C OsWAK31;Note=EGF-type aspartate/asparagine hydroxylation site domain containing protein.;Transcript_evidence=AK058435 (DDBJ%2C Best hit);ORF_evidence=B9FDV3 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515);InterPro=EGF-type aspartate/asparagine hydroxylation site (IPR000152),Epidermal growth factor-like%2C type 3 (IPR000742),EGF-like calcium-binding (IPR001881),Epidermal growth factor-like (IPR006210),EGF-like calcium-binding%2C conserved site (IPR018097);NIAS_FLcDNA=001-015-F06;Oryzabase=6930;TENOR=Os04t0220300-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	8009023	8009037	.	+	.	Parent=Os04t0220300-01
Chr04	irgsp1_rep	CDS	8009038	8009915	.	+	0	Parent=Os04t0220300-01
Chr04	irgsp1_rep	CDS	8013743	8013987	.	+	1	Parent=Os04t0220300-01
Chr04	irgsp1_rep	CDS	8018076	8018398	.	+	2	Parent=Os04t0220300-01
Chr04	irgsp1_rep	three_prime_UTR	8018399	8018541	.	+	.	Parent=Os04t0220300-01
Chr04	irgsp1_rep	mRNA	8009701	8019564	.	-	.	ID=Os04t0220400-00;Name=Os04t0220400-00;Locus_id=Os04g0220400;Note=Hypothetical protein.;Transcript_evidence=tplb0049o19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0220400-00
Chr04	irgsp1_rep	five_prime_UTR	8018930	8019564	.	-	.	Parent=Os04t0220400-00
Chr04	irgsp1_rep	CDS	8018654	8018929	.	-	0	Parent=Os04t0220400-00
Chr04	irgsp1_rep	three_prime_UTR	8018608	8018653	.	-	.	Parent=Os04t0220400-00
Chr04	irgsp1_rep	three_prime_UTR	8017800	8018244	.	-	.	Parent=Os04t0220400-00
Chr04	irgsp1_rep	three_prime_UTR	8013739	8014004	.	-	.	Parent=Os04t0220400-00
Chr04	irgsp1_rep	three_prime_UTR	8009701	8009935	.	-	.	Parent=Os04t0220400-00
Chr04	irgsp1_rep	mRNA	8035510	8037968	.	-	.	ID=Os04t0220501-00;Name=Os04t0220501-00;Locus_id=Os04g0220501;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XRD5 (UniProt);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);TENOR=Os04t0220501-00;KEGG=Os04t0220501-00
Chr04	irgsp1_rep	CDS	8036817	8037968	.	-	0	Parent=Os04t0220501-00
Chr04	irgsp1_rep	CDS	8035510	8036355	.	-	0	Parent=Os04t0220501-00
Chr04	irgsp1_rep	mRNA	8064674	8072284	.	-	.	ID=Os04t0221000-01;Name=Os04t0221000-01;Locus_id=Os04g0221000;Note=Conserved hypothetical protein.;Transcript_evidence=AK102514 (DDBJ%2C Best hit);ORF_evidence=A2XQM2 (UniProt);NIAS_FLcDNA=J033095J08;Expression=AK102514;TENOR=Os04t0221000-01;KEGG=Os04t0221000-01
Chr04	irgsp1_rep	five_prime_UTR	8072257	8072284	.	-	.	Parent=Os04t0221000-01
Chr04	irgsp1_rep	CDS	8071771	8072256	.	-	0	Parent=Os04t0221000-01
Chr04	irgsp1_rep	CDS	8071323	8071688	.	-	0	Parent=Os04t0221000-01
Chr04	irgsp1_rep	CDS	8071117	8071239	.	-	0	Parent=Os04t0221000-01
Chr04	irgsp1_rep	CDS	8066610	8066841	.	-	0	Parent=Os04t0221000-01
Chr04	irgsp1_rep	CDS	8065526	8065602	.	-	2	Parent=Os04t0221000-01
Chr04	irgsp1_rep	CDS	8064956	8065027	.	-	0	Parent=Os04t0221000-01
Chr04	irgsp1_rep	three_prime_UTR	8064674	8064955	.	-	.	Parent=Os04t0221000-01
Chr04	irgsp1_rep	mRNA	8085840	8090712	.	-	.	ID=Os04t0221300-01;Name=Os04t0221300-01;Locus_id=Os04g0221300;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK068979 (DDBJ%2C Best hit);ORF_evidence=B8AVS1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J023003J09;TENOR=Os04t0221300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	8090319	8090712	.	-	.	Parent=Os04t0221300-01
Chr04	irgsp1_rep	five_prime_UTR	8089163	8089298	.	-	.	Parent=Os04t0221300-01
Chr04	irgsp1_rep	CDS	8089134	8089162	.	-	0	Parent=Os04t0221300-01
Chr04	irgsp1_rep	CDS	8086179	8087454	.	-	1	Parent=Os04t0221300-01
Chr04	irgsp1_rep	three_prime_UTR	8085840	8086178	.	-	.	Parent=Os04t0221300-01
Chr04	irgsp1_rep	mRNA	8083780	8086943	.	-	.	ID=Os04t0221300-02;Name=Os04t0221300-02;Locus_id=Os04g0221300;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK063532 (DDBJ%2C Best hit);ORF_evidence=Q7XRD1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-117-B05;Expression=AK063532;TENOR=Os04t0221300-02;KEGG=Os04t0221300-02
Chr04	irgsp1_rep	CDS	8086179	8086943	.	-	0	Parent=Os04t0221300-02
Chr04	irgsp1_rep	three_prime_UTR	8086151	8086178	.	-	.	Parent=Os04t0221300-02
Chr04	irgsp1_rep	three_prime_UTR	8085319	8085603	.	-	.	Parent=Os04t0221300-02
Chr04	irgsp1_rep	three_prime_UTR	8084823	8085013	.	-	.	Parent=Os04t0221300-02
Chr04	irgsp1_rep	three_prime_UTR	8084239	8084723	.	-	.	Parent=Os04t0221300-02
Chr04	irgsp1_rep	three_prime_UTR	8083780	8084015	.	-	.	Parent=Os04t0221300-02
Chr04	irgsp1_rep	mRNA	8111666	8115861	.	+	.	ID=Os04t0221450-01;Name=Os04t0221450-01;Locus_id=Os04g0221450;Note=Hypothetical gene.;Transcript_evidence=AK289097 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090096D18;TENOR=Os04t0221450-01;KEGG=Os04t0221450-01
Chr04	irgsp1_rep	five_prime_UTR	8111666	8114050	.	+	.	Parent=Os04t0221450-01
Chr04	irgsp1_rep	CDS	8114051	8114365	.	+	0	Parent=Os04t0221450-01
Chr04	irgsp1_rep	three_prime_UTR	8114366	8115861	.	+	.	Parent=Os04t0221450-01
Chr04	irgsp1_rep	mRNA	8117448	8126285	.	-	.	ID=Os04t0221600-01;Name=Os04t0221600-01;Locus_id=Os04g0221600;Note=Zinc finger%2C PHD-type domain containing protein.;Transcript_evidence=AK100967 (DDBJ%2C Best hit);ORF_evidence=Q7X8A8 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-type%2C conserved site (IPR019786);NIAS_FLcDNA=J023142I15;TENOR=Os04t0221600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	8126022	8126285	.	-	0	Parent=Os04t0221600-01
Chr04	irgsp1_rep	CDS	8125163	8125952	.	-	0	Parent=Os04t0221600-01
Chr04	irgsp1_rep	CDS	8124753	8125072	.	-	2	Parent=Os04t0221600-01
Chr04	irgsp1_rep	CDS	8120990	8121059	.	-	0	Parent=Os04t0221600-01
Chr04	irgsp1_rep	CDS	8120519	8120902	.	-	2	Parent=Os04t0221600-01
Chr04	irgsp1_rep	CDS	8119986	8120440	.	-	2	Parent=Os04t0221600-01
Chr04	irgsp1_rep	CDS	8119745	8119900	.	-	0	Parent=Os04t0221600-01
Chr04	irgsp1_rep	CDS	8119240	8119492	.	-	0	Parent=Os04t0221600-01
Chr04	irgsp1_rep	CDS	8119097	8119167	.	-	2	Parent=Os04t0221600-01
Chr04	irgsp1_rep	CDS	8118893	8119015	.	-	0	Parent=Os04t0221600-01
Chr04	irgsp1_rep	CDS	8117756	8118103	.	-	0	Parent=Os04t0221600-01
Chr04	irgsp1_rep	three_prime_UTR	8117448	8117755	.	-	.	Parent=Os04t0221600-01
Chr04	irgsp1_rep	mRNA	8136123	8138420	.	-	.	ID=Os04t0221800-00;Name=Os04t0221800-00;Locus_id=Os04g0221800;Note=Protein of unknown function DUF594 domain containing protein.;Transcript_evidence=EU945087 (DDBJ);ORF_evidence=Q7XWN5 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);TENOR=Os04t0221800-00
Chr04	irgsp1_rep	CDS	8136123	8138420	.	-	0	Parent=Os04t0221800-00
Chr04	irgsp1_rep	mRNA	8166128	8166779	.	+	.	ID=Os04t0222250-00;Name=Os04t0222250-00;Locus_id=Os04g0222250;Note=Hypothetical conserved gene.;Transcript_evidence=AK062794 (DDBJ%2C Secondary hit);ORF_evidence=Q658D9 (UniProt);Expression=AK062794;TENOR=Os04t0222250-00;KEGG=Os04t0222250-00
Chr04	irgsp1_rep	five_prime_UTR	8166128	8166153	.	+	.	Parent=Os04t0222250-00
Chr04	irgsp1_rep	CDS	8166154	8166675	.	+	0	Parent=Os04t0222250-00
Chr04	irgsp1_rep	three_prime_UTR	8166676	8166779	.	+	.	Parent=Os04t0222250-00
Chr04	irgsp1_rep	mRNA	8213894	8213961	.	+	.	ID=Os04t0222900-00;Name=Os04t0222900-00;Locus_id=Os04g0222900;Note=Non-protein coding transcript.;Transcript_evidence=X06283 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0222900-00
Chr04	irgsp1_rep	exon	8213894	8213961	.	+	.	Parent=Os04t0222900-00
Chr04	irgsp1_rep	mRNA	8216513	8233284	.	-	.	ID=Os04t0223000-01;Name=Os04t0223000-01;Locus_id=Os04g0223000;Note=Sec1-like protein family protein.;Transcript_evidence=AK067177 (DDBJ%2C Best hit);ORF_evidence=B6T8U3 (UniProt);GO=Biological Process: vesicle docking involved in exocytosis (GO:0006904),Biological Process: vesicle-mediated transport (GO:0016192);InterPro=Sec1-like protein (IPR001619);NIAS_FLcDNA=J013097L24;Expression=AK067177;TENOR=Os04t0223000-01;KEGG=Os04t0223000-01
Chr04	irgsp1_rep	five_prime_UTR	8233109	8233284	.	-	.	Parent=Os04t0223000-01
Chr04	irgsp1_rep	five_prime_UTR	8232949	8233013	.	-	.	Parent=Os04t0223000-01
Chr04	irgsp1_rep	CDS	8232896	8232948	.	-	0	Parent=Os04t0223000-01
Chr04	irgsp1_rep	CDS	8232723	8232762	.	-	1	Parent=Os04t0223000-01
Chr04	irgsp1_rep	CDS	8232551	8232631	.	-	0	Parent=Os04t0223000-01
Chr04	irgsp1_rep	CDS	8231973	8232167	.	-	0	Parent=Os04t0223000-01
Chr04	irgsp1_rep	CDS	8229514	8229624	.	-	0	Parent=Os04t0223000-01
Chr04	irgsp1_rep	CDS	8229279	8229344	.	-	0	Parent=Os04t0223000-01
Chr04	irgsp1_rep	CDS	8228215	8228322	.	-	0	Parent=Os04t0223000-01
Chr04	irgsp1_rep	CDS	8228094	8228138	.	-	0	Parent=Os04t0223000-01
Chr04	irgsp1_rep	CDS	8227825	8227881	.	-	0	Parent=Os04t0223000-01
Chr04	irgsp1_rep	CDS	8227066	8227160	.	-	0	Parent=Os04t0223000-01
Chr04	irgsp1_rep	CDS	8225232	8225283	.	-	1	Parent=Os04t0223000-01
Chr04	irgsp1_rep	CDS	8225009	8225068	.	-	0	Parent=Os04t0223000-01
Chr04	irgsp1_rep	CDS	8224333	8224395	.	-	0	Parent=Os04t0223000-01
Chr04	irgsp1_rep	CDS	8224155	8224261	.	-	0	Parent=Os04t0223000-01
Chr04	irgsp1_rep	CDS	8223459	8223581	.	-	1	Parent=Os04t0223000-01
Chr04	irgsp1_rep	CDS	8221276	8221357	.	-	1	Parent=Os04t0223000-01
Chr04	irgsp1_rep	CDS	8221100	8221170	.	-	0	Parent=Os04t0223000-01
Chr04	irgsp1_rep	CDS	8219994	8220074	.	-	1	Parent=Os04t0223000-01
Chr04	irgsp1_rep	CDS	8219030	8219087	.	-	1	Parent=Os04t0223000-01
Chr04	irgsp1_rep	CDS	8218886	8218953	.	-	0	Parent=Os04t0223000-01
Chr04	irgsp1_rep	CDS	8217502	8217589	.	-	1	Parent=Os04t0223000-01
Chr04	irgsp1_rep	CDS	8216794	8216895	.	-	0	Parent=Os04t0223000-01
Chr04	irgsp1_rep	three_prime_UTR	8216513	8216793	.	-	.	Parent=Os04t0223000-01
Chr04	irgsp1_rep	mRNA	8239288	8241854	.	-	.	ID=Os04t0223300-00;Name=Os04t0223300-00;Locus_id=Os04g0223300;CGSNL Gene Symbol=APX3;CGSNL Gene Name=ASCORBATE PEROXIDASE 3;Oryzabase Gene Symbol Synonym(s)=OsAPx3%2C OsAPx03%2C OSAPX3%2C APx3%2C mAPX;Oryzabase Gene Name Synonym(s)=ascorbate peroxidase 3%2C Peroxisomal Ascorbate Peroxidase%2C microbody-bound ascorbate peroxidase;Note=Similar to Peroxisome type ascorbate peroxidase.;Transcript_evidence=AY382617 (DDBJ%2C Best hit);ORF_evidence=NP_001148710.1 (RefSeq);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Plant ascorbate peroxidase (IPR002207),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);Oryzabase=8953;Expression=AY382617;TENOR=Os04t0223300-00;KEGG=Os04t0223300-00 (EC:1.11.1.11)
Chr04	irgsp1_rep	five_prime_UTR	8241816	8241854	.	-	.	Parent=Os04t0223300-00
Chr04	irgsp1_rep	CDS	8241700	8241815	.	-	0	Parent=Os04t0223300-00
Chr04	irgsp1_rep	CDS	8241431	8241555	.	-	1	Parent=Os04t0223300-00
Chr04	irgsp1_rep	CDS	8241250	8241299	.	-	2	Parent=Os04t0223300-00
Chr04	irgsp1_rep	CDS	8240868	8240933	.	-	0	Parent=Os04t0223300-00
Chr04	irgsp1_rep	CDS	8240725	8240773	.	-	0	Parent=Os04t0223300-00
Chr04	irgsp1_rep	CDS	8240371	8240453	.	-	2	Parent=Os04t0223300-00
Chr04	irgsp1_rep	CDS	8240197	8240276	.	-	0	Parent=Os04t0223300-00
Chr04	irgsp1_rep	CDS	8239937	8240039	.	-	1	Parent=Os04t0223300-00
Chr04	irgsp1_rep	CDS	8239433	8239636	.	-	0	Parent=Os04t0223300-00
Chr04	irgsp1_rep	three_prime_UTR	8239288	8239432	.	-	.	Parent=Os04t0223300-00
Chr04	irgsp1_rep	mRNA	8243749	8249931	.	-	.	ID=Os04t0223500-01;Name=Os04t0223500-01;Locus_id=Os04g0223500;Note=Dimethylaniline monooxygenase%2C N-oxide-forming domain containing protein.;Transcript_evidence=AK071801 (DDBJ%2C Best hit);ORF_evidence=Q01MI8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: intrinsic to endoplasmic reticulum membrane (GO:0031227),Molecular Function: flavin-containing monooxygenase activity (GO:0004499),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=Dimethylaniline monooxygenase%2C N-oxide-forming (IPR012143),Flavin monooxygenase-like (IPR020946);NIAS_FLcDNA=J023110J22;Expression=AK071801;TENOR=Os04t0223500-01;KEGG=Os04t0223500-01
Chr04	irgsp1_rep	five_prime_UTR	8249881	8249931	.	-	.	Parent=Os04t0223500-01
Chr04	irgsp1_rep	CDS	8249440	8249880	.	-	0	Parent=Os04t0223500-01
Chr04	irgsp1_rep	CDS	8245125	8245362	.	-	0	Parent=Os04t0223500-01
Chr04	irgsp1_rep	CDS	8244829	8245004	.	-	2	Parent=Os04t0223500-01
Chr04	irgsp1_rep	CDS	8244374	8244726	.	-	0	Parent=Os04t0223500-01
Chr04	irgsp1_rep	CDS	8243915	8244272	.	-	1	Parent=Os04t0223500-01
Chr04	irgsp1_rep	three_prime_UTR	8243749	8243914	.	-	.	Parent=Os04t0223500-01
Chr04	irgsp1_rep	mRNA	8243781	8244947	.	-	.	ID=Os04t0223500-02;Name=Os04t0223500-02;Locus_id=Os04g0223500;Note=Similar to H0515C11.3 protein.;Transcript_evidence=AK120831 (DDBJ%2C Best hit);ORF_evidence=Q01MI8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: flavin-containing monooxygenase activity (GO:0004499),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=Flavin monooxygenase-like (IPR020946);NIAS_FLcDNA=J023019L05;Expression=AK120831;TENOR=Os04t0223500-02;KEGG=Os04t0223500-02
Chr04	irgsp1_rep	five_prime_UTR	8244946	8244947	.	-	.	Parent=Os04t0223500-02
Chr04	irgsp1_rep	CDS	8244829	8244945	.	-	0	Parent=Os04t0223500-02
Chr04	irgsp1_rep	CDS	8244374	8244726	.	-	0	Parent=Os04t0223500-02
Chr04	irgsp1_rep	CDS	8243915	8244272	.	-	1	Parent=Os04t0223500-02
Chr04	irgsp1_rep	three_prime_UTR	8243781	8243914	.	-	.	Parent=Os04t0223500-02
Chr04	irgsp1_rep	mRNA	8246733	8247495	.	-	.	ID=Os04t0223600-01;Name=Os04t0223600-01;Locus_id=Os04g0223600;Note=Hypothetical gene.;Transcript_evidence=AK107789 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-133-D03;TENOR=Os04t0223600-01
Chr04	irgsp1_rep	five_prime_UTR	8246983	8247495	.	-	.	Parent=Os04t0223600-01
Chr04	irgsp1_rep	CDS	8246733	8246982	.	-	0	Parent=Os04t0223600-01
Chr04	irgsp1_rep	mRNA	8263115	8268571	.	-	.	ID=Os04t0223901-00;Name=Os04t0223901-00;Locus_id=Os04g0223901;Note=Dimethylaniline monooxygenase%2C N-oxide-forming domain containing protein.;Transcript_evidence=AK071801 (DDBJ%2C Secondary hit);ORF_evidence=Q01MI7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: intrinsic to endoplasmic reticulum membrane (GO:0031227),Molecular Function: flavin-containing monooxygenase activity (GO:0004499),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=Dimethylaniline monooxygenase%2C N-oxide-forming (IPR012143),Flavin monooxygenase-like (IPR020946);Expression=AK071801;TENOR=Os04t0223901-00;KEGG=Os04t0223901-00
Chr04	irgsp1_rep	five_prime_UTR	8268556	8268571	.	-	.	Parent=Os04t0223901-00
Chr04	irgsp1_rep	CDS	8268115	8268555	.	-	0	Parent=Os04t0223901-00
Chr04	irgsp1_rep	CDS	8264450	8264687	.	-	0	Parent=Os04t0223901-00
Chr04	irgsp1_rep	CDS	8264161	8264336	.	-	2	Parent=Os04t0223901-00
Chr04	irgsp1_rep	CDS	8263706	8264058	.	-	0	Parent=Os04t0223901-00
Chr04	irgsp1_rep	CDS	8263237	8263594	.	-	1	Parent=Os04t0223901-00
Chr04	irgsp1_rep	three_prime_UTR	8263115	8263236	.	-	.	Parent=Os04t0223901-00
Chr04	irgsp1_rep	mRNA	8267091	8268721	.	+	.	ID=Os04t0224000-01;Name=Os04t0224000-01;Locus_id=Os04g0224000;Note=Hypothetical protein.;Transcript_evidence=AK105500 (DDBJ%2C Best hit),AK109448 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-127-D04,001-110-G01;TENOR=Os04t0224000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	8267091	8267148	.	+	.	Parent=Os04t0224000-01
Chr04	irgsp1_rep	CDS	8267149	8267664	.	+	0	Parent=Os04t0224000-01
Chr04	irgsp1_rep	three_prime_UTR	8267665	8268721	.	+	.	Parent=Os04t0224000-01
Chr04	irgsp1_rep	mRNA	8274136	8275149	.	-	.	ID=Os04t0224200-01;Name=Os04t0224200-01;Locus_id=Os04g0224200;Note=Hypothetical protein.;Transcript_evidence=AK066486 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J013069A05;Expression=AK066486;TENOR=Os04t0224200-01;KEGG=Os04t0224200-01
Chr04	irgsp1_rep	CDS	8274727	8275149	.	-	0	Parent=Os04t0224200-01
Chr04	irgsp1_rep	three_prime_UTR	8274136	8274726	.	-	.	Parent=Os04t0224200-01
Chr04	irgsp1_rep	mRNA	8280306	8285271	.	-	.	ID=Os04t0224600-01;Name=Os04t0224600-01;Locus_id=Os04g0224600;Note=Phosphoglycerate mutase domain containing protein.;Transcript_evidence=AK058344 (DDBJ%2C Best hit);ORF_evidence=Q01MH8 (UniProt);InterPro=Histidine phosphatase superfamily%2C clade-1 (IPR013078);NIAS_FLcDNA=001-014-D11;Expression=AK058344;TENOR=Os04t0224600-01;KEGG=Os04t0224600-01
Chr04	irgsp1_rep	five_prime_UTR	8285217	8285271	.	-	.	Parent=Os04t0224600-01
Chr04	irgsp1_rep	CDS	8285097	8285216	.	-	0	Parent=Os04t0224600-01
Chr04	irgsp1_rep	CDS	8284888	8284968	.	-	0	Parent=Os04t0224600-01
Chr04	irgsp1_rep	CDS	8284671	8284799	.	-	0	Parent=Os04t0224600-01
Chr04	irgsp1_rep	CDS	8283784	8283846	.	-	0	Parent=Os04t0224600-01
Chr04	irgsp1_rep	CDS	8281941	8282065	.	-	0	Parent=Os04t0224600-01
Chr04	irgsp1_rep	CDS	8280459	8280651	.	-	1	Parent=Os04t0224600-01
Chr04	irgsp1_rep	three_prime_UTR	8280306	8280458	.	-	.	Parent=Os04t0224600-01
Chr04	irgsp1_rep	mRNA	8307367	8312159	.	-	.	ID=Os04t0224900-01;Name=Os04t0224900-01;Locus_id=Os04g0224900;Note=FAD-dependent glycerol-3-phosphate dehydrogenase domain containing protein.;Transcript_evidence=AK058569 (DDBJ%2C Best hit),AK104305 (DDBJ%2C Best hit);ORF_evidence=Q01LW8 (UniProt);GO=Biological Process: glycerol-3-phosphate metabolic process (GO:0006072),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: glycerol-3-phosphate dehydrogenase complex (GO:0009331),Molecular Function: glycerol-3-phosphate dehydrogenase activity (GO:0004368),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FAD-dependent glycerol-3-phosphate dehydrogenase (IPR000447),FAD dependent oxidoreductase (IPR006076);NIAS_FLcDNA=001-017-E06,001-012-D11;Expression=AK058569;TENOR=Os04t0224900-01;KEGG=Os04t0224900-01 (EC:1.1.5.3)
Chr04	irgsp1_rep	five_prime_UTR	8312158	8312159	.	-	.	Parent=Os04t0224900-01
Chr04	irgsp1_rep	CDS	8312079	8312157	.	-	0	Parent=Os04t0224900-01
Chr04	irgsp1_rep	CDS	8310685	8311016	.	-	2	Parent=Os04t0224900-01
Chr04	irgsp1_rep	CDS	8310024	8310184	.	-	0	Parent=Os04t0224900-01
Chr04	irgsp1_rep	CDS	8309187	8309445	.	-	1	Parent=Os04t0224900-01
Chr04	irgsp1_rep	CDS	8307710	8308007	.	-	0	Parent=Os04t0224900-01
Chr04	irgsp1_rep	CDS	8307626	8307633	.	-	2	Parent=Os04t0224900-01
Chr04	irgsp1_rep	three_prime_UTR	8307367	8307625	.	-	.	Parent=Os04t0224900-01
Chr04	irgsp1_rep	mRNA	8312869	8314234	.	-	.	ID=Os04t0225001-00;Name=Os04t0225001-00;Locus_id=Os04g0225001;Note=Similar to OSIGBa0101A01.3 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01LW8 (UniProt);GO=Biological Process: glycerol-3-phosphate metabolic process (GO:0006072),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: glycerol-3-phosphate dehydrogenase complex (GO:0009331),Molecular Function: glycerol-3-phosphate dehydrogenase activity (GO:0004368),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FAD-dependent glycerol-3-phosphate dehydrogenase (IPR000447),FAD dependent oxidoreductase (IPR006076);TENOR=Os04t0225001-00;KEGG=Os04t0225001-00 (EC:1.1.5.3)
Chr04	irgsp1_rep	CDS	8313877	8314234	.	-	0	Parent=Os04t0225001-00
Chr04	irgsp1_rep	CDS	8312869	8312915	.	-	2	Parent=Os04t0225001-00
Chr04	irgsp1_rep	mRNA	8320725	8321324	.	+	.	ID=Os04t0225067-00;Name=Os04t0225067-00;Locus_id=Os04g0225067;Note=Hypothetical protein.;Transcript_evidence=BT019050 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0225067-00
Chr04	irgsp1_rep	five_prime_UTR	8320725	8320725	.	+	.	Parent=Os04t0225067-00
Chr04	irgsp1_rep	CDS	8320726	8321322	.	+	0	Parent=Os04t0225067-00
Chr04	irgsp1_rep	three_prime_UTR	8321323	8321324	.	+	.	Parent=Os04t0225067-00
Chr04	irgsp1_rep	mRNA	8320595	8321435	.	-	.	ID=Os04t0225100-01;Name=Os04t0225100-01;Locus_id=Os04g0225100;Note=3'-5' exonuclease domain containing protein.;Transcript_evidence=AK105234 (DDBJ%2C Best hit);ORF_evidence=Q01LW7 (UniProt);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: 3'-5' exonuclease activity (GO:0008408);InterPro=3&apos%3B-5&apos%3B exonuclease (IPR002562),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=001-112-G11;Expression=AK105234;TENOR=Os04t0225100-01;KEGG=Os04t0225100-01 (EC:3.6.1.-)
Chr04	irgsp1_rep	five_prime_UTR	8321377	8321435	.	-	.	Parent=Os04t0225100-01
Chr04	irgsp1_rep	CDS	8320741	8321376	.	-	0	Parent=Os04t0225100-01
Chr04	irgsp1_rep	three_prime_UTR	8320595	8320740	.	-	.	Parent=Os04t0225100-01
Chr04	irgsp1_rep	mRNA	8346834	8347622	.	-	.	ID=Os04t0225250-00;Name=Os04t0225250-00;Locus_id=Os04g0225250;Note=Similar to OSIGBa0148I18.4 protein.;Transcript_evidence=BT040014 (DDBJ);ORF_evidence=Q01N33 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os04t0225250-00
Chr04	irgsp1_rep	CDS	8347029	8347622	.	-	0	Parent=Os04t0225250-00
Chr04	irgsp1_rep	three_prime_UTR	8346834	8347028	.	-	.	Parent=Os04t0225250-00
Chr04	irgsp1_rep	mRNA	8370325	8373574	.	+	.	ID=Os04t0225400-01;Name=Os04t0225400-01;Locus_id=Os04g0225400;Note=Hypothetical protein.;Transcript_evidence=AK288828 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090073J24;TENOR=Os04t0225400-01
Chr04	irgsp1_rep	five_prime_UTR	8370325	8371184	.	+	.	Parent=Os04t0225400-01
Chr04	irgsp1_rep	CDS	8371185	8371415	.	+	0	Parent=Os04t0225400-01
Chr04	irgsp1_rep	three_prime_UTR	8371416	8373574	.	+	.	Parent=Os04t0225400-01
Chr04	irgsp1_rep	mRNA	8423730	8424629	.	+	.	ID=Os04t0225700-00;Name=Os04t0225700-00;Locus_id=Os04g0225700;Oryzabase Gene Symbol Synonym(s)=OsBURP05%2C OsBURP5;Oryzabase Gene Name Synonym(s)=BURP domain-containing protein 5;Note=Similar to BURP domain-containing protein 5.;Transcript_evidence=Q0JEP3 (UniProt);ORF_evidence=Q0JEP3 (UniProt);InterPro=BURP (IPR004873);Oryzabase=15044;TENOR=Os04t0225700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	8423730	8424629	.	+	0	Parent=Os04t0225700-00
Chr04	irgsp1_rep	mRNA	8445274	8464291	.	+	.	ID=Os04t0226340-00;Name=Os04t0226340-00;Locus_id=Os04g0226340;Note=Conserved hypothetical protein.;Transcript_evidence=AK376503 (DDBJ);ORF_evidence=XP_002446184.1 (RefSeq);TENOR=Os04t0226340-00
Chr04	irgsp1_rep	five_prime_UTR	8445274	8445650	.	+	.	Parent=Os04t0226340-00
Chr04	irgsp1_rep	five_prime_UTR	8446622	8447121	.	+	.	Parent=Os04t0226340-00
Chr04	irgsp1_rep	five_prime_UTR	8453168	8453496	.	+	.	Parent=Os04t0226340-00
Chr04	irgsp1_rep	five_prime_UTR	8461549	8461638	.	+	.	Parent=Os04t0226340-00
Chr04	irgsp1_rep	five_prime_UTR	8462631	8462926	.	+	.	Parent=Os04t0226340-00
Chr04	irgsp1_rep	CDS	8462927	8463628	.	+	0	Parent=Os04t0226340-00
Chr04	irgsp1_rep	three_prime_UTR	8463629	8464089	.	+	.	Parent=Os04t0226340-00
Chr04	irgsp1_rep	three_prime_UTR	8464159	8464291	.	+	.	Parent=Os04t0226340-00
Chr04	irgsp1_rep	mRNA	8453829	8461439	.	+	.	ID=Os04t0226400-01;Name=Os04t0226400-01;Locus_id=Os04g0226400;Note=Regulator of Chromosome condensation/beta-lactamase-inhibitor protein II domain containing protein.;Transcript_evidence=AK120419 (DDBJ%2C Best hit);ORF_evidence=B7F5N5 (UniProt);InterPro=Regulator of Chromosome condensation%2C RCC1 (IPR000408),Regulator of Chromosome condensation/beta-lactamase-inhibitor protein II (IPR009091);NIAS_FLcDNA=J013094A11;Expression=AK120419;TENOR=Os04t0226400-01;KEGG=Os04t0226400-01 (EC:6.3.2.19)
Chr04	irgsp1_rep	five_prime_UTR	8453829	8453829	.	+	.	Parent=Os04t0226400-01
Chr04	irgsp1_rep	CDS	8453830	8453896	.	+	0	Parent=Os04t0226400-01
Chr04	irgsp1_rep	CDS	8454411	8454543	.	+	2	Parent=Os04t0226400-01
Chr04	irgsp1_rep	CDS	8454674	8454813	.	+	1	Parent=Os04t0226400-01
Chr04	irgsp1_rep	CDS	8454947	8455047	.	+	2	Parent=Os04t0226400-01
Chr04	irgsp1_rep	CDS	8455146	8455212	.	+	0	Parent=Os04t0226400-01
Chr04	irgsp1_rep	CDS	8455297	8455412	.	+	2	Parent=Os04t0226400-01
Chr04	irgsp1_rep	CDS	8456482	8456511	.	+	0	Parent=Os04t0226400-01
Chr04	irgsp1_rep	three_prime_UTR	8456512	8456630	.	+	.	Parent=Os04t0226400-01
Chr04	irgsp1_rep	three_prime_UTR	8457141	8460691	.	+	.	Parent=Os04t0226400-01
Chr04	irgsp1_rep	three_prime_UTR	8460853	8461041	.	+	.	Parent=Os04t0226400-01
Chr04	irgsp1_rep	three_prime_UTR	8461138	8461439	.	+	.	Parent=Os04t0226400-01
Chr04	irgsp1_rep	mRNA	8453829	8461494	.	+	.	ID=Os04t0226400-02;Name=Os04t0226400-02;Locus_id=Os04g0226400;Note=Regulator of Chromosome condensation%2C RCC1 domain containing protein.;Transcript_evidence=AK120245 (DDBJ%2C Best hit);ORF_evidence=B8BEF2 (UniProt);InterPro=Regulator of Chromosome condensation%2C RCC1 (IPR000408),Regulator of Chromosome condensation/beta-lactamase-inhibitor protein II (IPR009091);NIAS_FLcDNA=J013044J21;TENOR=Os04t0226400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	8453829	8454052	.	+	.	Parent=Os04t0226400-02
Chr04	irgsp1_rep	CDS	8454053	8454547	.	+	0	Parent=Os04t0226400-02
Chr04	irgsp1_rep	three_prime_UTR	8454548	8454584	.	+	.	Parent=Os04t0226400-02
Chr04	irgsp1_rep	three_prime_UTR	8454674	8454813	.	+	.	Parent=Os04t0226400-02
Chr04	irgsp1_rep	three_prime_UTR	8454947	8455047	.	+	.	Parent=Os04t0226400-02
Chr04	irgsp1_rep	three_prime_UTR	8455146	8455217	.	+	.	Parent=Os04t0226400-02
Chr04	irgsp1_rep	three_prime_UTR	8455299	8455412	.	+	.	Parent=Os04t0226400-02
Chr04	irgsp1_rep	three_prime_UTR	8456482	8456630	.	+	.	Parent=Os04t0226400-02
Chr04	irgsp1_rep	three_prime_UTR	8457141	8460691	.	+	.	Parent=Os04t0226400-02
Chr04	irgsp1_rep	three_prime_UTR	8460853	8461041	.	+	.	Parent=Os04t0226400-02
Chr04	irgsp1_rep	three_prime_UTR	8461138	8461494	.	+	.	Parent=Os04t0226400-02
Chr04	irgsp1_rep	mRNA	8453838	8459082	.	+	.	ID=Os04t0226400-03;Name=Os04t0226400-03;Locus_id=Os04g0226400;Note=Similar to cDNA clone:J013044J21%2C full insert sequence.;Transcript_evidence=AK120819 (DDBJ%2C Best hit);ORF_evidence=B7F5N5 (UniProt);InterPro=Regulator of Chromosome condensation%2C RCC1 (IPR000408),Regulator of Chromosome condensation/beta-lactamase-inhibitor protein II (IPR009091);NIAS_FLcDNA=J023015E20;TENOR=Os04t0226400-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	8453838	8454052	.	+	.	Parent=Os04t0226400-03
Chr04	irgsp1_rep	CDS	8454053	8454547	.	+	0	Parent=Os04t0226400-03
Chr04	irgsp1_rep	three_prime_UTR	8454548	8454633	.	+	.	Parent=Os04t0226400-03
Chr04	irgsp1_rep	three_prime_UTR	8455163	8455217	.	+	.	Parent=Os04t0226400-03
Chr04	irgsp1_rep	three_prime_UTR	8455299	8455412	.	+	.	Parent=Os04t0226400-03
Chr04	irgsp1_rep	three_prime_UTR	8456482	8456630	.	+	.	Parent=Os04t0226400-03
Chr04	irgsp1_rep	three_prime_UTR	8457141	8457235	.	+	.	Parent=Os04t0226400-03
Chr04	irgsp1_rep	three_prime_UTR	8457318	8459082	.	+	.	Parent=Os04t0226400-03
Chr04	irgsp1_rep	mRNA	8472839	8476142	.	-	.	ID=Os04t0226600-01;Name=Os04t0226600-01;Locus_id=Os04g0226600;CGSNL Gene Symbol=RLCK138;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 138;Oryzabase Gene Symbol Synonym(s)=OsRLCK138;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 138;Note=Similar to OSIGBa0135L04.3 protein.;Transcript_evidence=AK119282 (DDBJ%2C Best hit);ORF_evidence=Q01M86 (UniProt);GO=Biological Process: recognition of pollen (GO:0048544),Molecular Function: sugar binding (GO:0005529);InterPro=S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480);NIAS_FLcDNA=001-130-C07;Oryzabase=18844;TENOR=Os04t0226600-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	8476032	8476142	.	-	.	Parent=Os04t0226600-01
Chr04	irgsp1_rep	CDS	8474844	8476031	.	-	0	Parent=Os04t0226600-01
Chr04	irgsp1_rep	three_prime_UTR	8474722	8474843	.	-	.	Parent=Os04t0226600-01
Chr04	irgsp1_rep	three_prime_UTR	8474486	8474587	.	-	.	Parent=Os04t0226600-01
Chr04	irgsp1_rep	three_prime_UTR	8474216	8474397	.	-	.	Parent=Os04t0226600-01
Chr04	irgsp1_rep	three_prime_UTR	8473905	8474115	.	-	.	Parent=Os04t0226600-01
Chr04	irgsp1_rep	three_prime_UTR	8473574	8473811	.	-	.	Parent=Os04t0226600-01
Chr04	irgsp1_rep	three_prime_UTR	8473327	8473477	.	-	.	Parent=Os04t0226600-01
Chr04	irgsp1_rep	three_prime_UTR	8472839	8473242	.	-	.	Parent=Os04t0226600-01
Chr04	irgsp1_rep	mRNA	8472977	8476008	.	+	.	ID=Os04t0226633-00;Name=Os04t0226633-00;Locus_id=Os04g0226633;Note=Hypothetical protein.;Transcript_evidence=tplb0036c01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0226633-00
Chr04	irgsp1_rep	five_prime_UTR	8472977	8473287	.	+	.	Parent=Os04t0226633-00
Chr04	irgsp1_rep	five_prime_UTR	8473382	8473507	.	+	.	Parent=Os04t0226633-00
Chr04	irgsp1_rep	five_prime_UTR	8473602	8473803	.	+	.	Parent=Os04t0226633-00
Chr04	irgsp1_rep	five_prime_UTR	8473894	8474105	.	+	.	Parent=Os04t0226633-00
Chr04	irgsp1_rep	five_prime_UTR	8474208	8474335	.	+	.	Parent=Os04t0226633-00
Chr04	irgsp1_rep	five_prime_UTR	8474405	8474579	.	+	.	Parent=Os04t0226633-00
Chr04	irgsp1_rep	five_prime_UTR	8474705	8474954	.	+	.	Parent=Os04t0226633-00
Chr04	irgsp1_rep	CDS	8474955	8475509	.	+	0	Parent=Os04t0226633-00
Chr04	irgsp1_rep	three_prime_UTR	8475510	8476008	.	+	.	Parent=Os04t0226633-00
Chr04	irgsp1_rep	mRNA	8479770	8479979	.	-	.	ID=Os04t0226666-00;Name=Os04t0226666-00;Locus_id=Os04g0226666;Note=Similar to Receptor-like kinase with LRR repeats (Fragment).;Transcript_evidence=AJ606035 (DDBJ);ORF_evidence=Q70AH7 (UniProt);TENOR=Os04t0226666-00
Chr04	irgsp1_rep	five_prime_UTR	8479972	8479979	.	-	.	Parent=Os04t0226666-00
Chr04	irgsp1_rep	CDS	8479780	8479971	.	-	0	Parent=Os04t0226666-00
Chr04	irgsp1_rep	three_prime_UTR	8479770	8479779	.	-	.	Parent=Os04t0226666-00
Chr04	irgsp1_rep	mRNA	8497213	8499957	.	+	.	ID=Os04t0226800-00;Name=Os04t0226800-00;Locus_id=Os04g0226800;Note=Similar to OSIGBa0135L04.4 protein.;Transcript_evidence=AJ606035 (DDBJ);ORF_evidence=Q01M85 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os04t0226800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	8497213	8499502	.	+	0	Parent=Os04t0226800-00
Chr04	irgsp1_rep	CDS	8499593	8499957	.	+	2	Parent=Os04t0226800-00
Chr04	irgsp1_rep	mRNA	8507962	8511064	.	+	.	ID=Os04t0227000-01;Name=Os04t0227000-01;Locus_id=Os04g0227000;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=AK111733 (DDBJ%2C Best hit);ORF_evidence=Q7XNV6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J023036E19;Expression=AK111733;TENOR=Os04t0227000-01;KEGG=Os04t0227000-01
Chr04	irgsp1_rep	five_prime_UTR	8507962	8508016	.	+	.	Parent=Os04t0227000-01
Chr04	irgsp1_rep	CDS	8508017	8508751	.	+	0	Parent=Os04t0227000-01
Chr04	irgsp1_rep	three_prime_UTR	8508752	8510518	.	+	.	Parent=Os04t0227000-01
Chr04	irgsp1_rep	three_prime_UTR	8510606	8511064	.	+	.	Parent=Os04t0227000-01
Chr04	irgsp1_rep	mRNA	8514849	8519651	.	-	.	ID=Os04t0227100-01;Name=Os04t0227100-01;Locus_id=Os04g0227100;Note=Hypothetical protein.;Transcript_evidence=AK120507 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013123E09;Expression=AK120507;TENOR=Os04t0227100-01;KEGG=Os04t0227100-01
Chr04	irgsp1_rep	five_prime_UTR	8518827	8519651	.	-	.	Parent=Os04t0227100-01
Chr04	irgsp1_rep	five_prime_UTR	8518649	8518738	.	-	.	Parent=Os04t0227100-01
Chr04	irgsp1_rep	five_prime_UTR	8515578	8518562	.	-	.	Parent=Os04t0227100-01
Chr04	irgsp1_rep	CDS	8515203	8515577	.	-	0	Parent=Os04t0227100-01
Chr04	irgsp1_rep	three_prime_UTR	8514849	8515202	.	-	.	Parent=Os04t0227100-01
Chr04	irgsp1_rep	mRNA	8514940	8518004	.	+	.	ID=Os04t0227200-00;Name=Os04t0227200-00;Locus_id=Os04g0227200;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK374394 (DDBJ);ORF_evidence=Q7XNV5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os04t0227200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	8514940	8517556	.	+	0	Parent=Os04t0227200-00
Chr04	irgsp1_rep	CDS	8517651	8518000	.	+	2	Parent=Os04t0227200-00
Chr04	irgsp1_rep	three_prime_UTR	8518001	8518004	.	+	.	Parent=Os04t0227200-00
Chr04	irgsp1_rep	mRNA	8528512	8533136	.	+	.	ID=Os04t0227500-01;Name=Os04t0227500-01;Locus_id=Os04g0227500;Note=DSBA oxidoreductase family protein.;Transcript_evidence=AK104227 (DDBJ%2C Best hit),AK059943 (DDBJ%2C Best hit),AK060052 (DDBJ%2C Best hit);ORF_evidence=B6U346 (UniProt);InterPro=Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=006-307-A06,006-210-G02,006-305-A07;Expression=AK104227;TENOR=Os04t0227500-01;KEGG=Os04t0227500-01
Chr04	irgsp1_rep	five_prime_UTR	8528512	8528603	.	+	.	Parent=Os04t0227500-01
Chr04	irgsp1_rep	CDS	8528604	8528881	.	+	0	Parent=Os04t0227500-01
Chr04	irgsp1_rep	CDS	8531387	8531489	.	+	1	Parent=Os04t0227500-01
Chr04	irgsp1_rep	CDS	8532172	8532336	.	+	0	Parent=Os04t0227500-01
Chr04	irgsp1_rep	CDS	8532687	8532821	.	+	0	Parent=Os04t0227500-01
Chr04	irgsp1_rep	three_prime_UTR	8532822	8533136	.	+	.	Parent=Os04t0227500-01
Chr04	irgsp1_rep	mRNA	8566258	8566315	.	-	.	ID=Os04t0227833-00;Name=Os04t0227833-00;Locus_id=Os04g0227833;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0227833-00
Chr04	irgsp1_rep	exon	8566258	8566315	.	-	.	Parent=Os04t0227833-00
Chr04	irgsp1_rep	mRNA	8578980	8585626	.	+	.	ID=Os04t0228000-01;Name=Os04t0228000-01;Locus_id=Os04g0228000;Note=Peptidase A1 domain containing protein.;Transcript_evidence=AK105031 (DDBJ%2C Best hit);ORF_evidence=Q01MD1 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=001-017-A07;Expression=AK105031;TENOR=Os04t0228000-01;KEGG=Os04t0228000-01
Chr04	irgsp1_rep	five_prime_UTR	8578980	8579156	.	+	.	Parent=Os04t0228000-01
Chr04	irgsp1_rep	CDS	8579157	8579497	.	+	0	Parent=Os04t0228000-01
Chr04	irgsp1_rep	CDS	8579591	8579726	.	+	1	Parent=Os04t0228000-01
Chr04	irgsp1_rep	CDS	8582223	8582446	.	+	0	Parent=Os04t0228000-01
Chr04	irgsp1_rep	CDS	8582524	8582748	.	+	1	Parent=Os04t0228000-01
Chr04	irgsp1_rep	CDS	8583174	8583309	.	+	1	Parent=Os04t0228000-01
Chr04	irgsp1_rep	CDS	8583386	8583459	.	+	0	Parent=Os04t0228000-01
Chr04	irgsp1_rep	CDS	8583553	8583652	.	+	1	Parent=Os04t0228000-01
Chr04	irgsp1_rep	CDS	8583736	8583796	.	+	0	Parent=Os04t0228000-01
Chr04	irgsp1_rep	CDS	8585062	8585133	.	+	2	Parent=Os04t0228000-01
Chr04	irgsp1_rep	CDS	8585216	8585439	.	+	2	Parent=Os04t0228000-01
Chr04	irgsp1_rep	three_prime_UTR	8585440	8585626	.	+	.	Parent=Os04t0228000-01
Chr04	irgsp1_rep	mRNA	8586491	8588227	.	-	.	ID=Os04t0228100-01;Name=Os04t0228100-01;Locus_id=Os04g0228100;Note=Similar to H0209A05.2 protein.;Transcript_evidence=AK059410 (DDBJ%2C Best hit);ORF_evidence=Q01MD0 (UniProt);NIAS_FLcDNA=001-027-C06;Expression=AK059410;TENOR=Os04t0228100-01;KEGG=Os04t0228100-01
Chr04	irgsp1_rep	five_prime_UTR	8588185	8588227	.	-	.	Parent=Os04t0228100-01
Chr04	irgsp1_rep	CDS	8588065	8588184	.	-	0	Parent=Os04t0228100-01
Chr04	irgsp1_rep	CDS	8587855	8587977	.	-	0	Parent=Os04t0228100-01
Chr04	irgsp1_rep	CDS	8587477	8587740	.	-	0	Parent=Os04t0228100-01
Chr04	irgsp1_rep	CDS	8587208	8587372	.	-	0	Parent=Os04t0228100-01
Chr04	irgsp1_rep	CDS	8586622	8586906	.	-	0	Parent=Os04t0228100-01
Chr04	irgsp1_rep	three_prime_UTR	8586491	8586621	.	-	.	Parent=Os04t0228100-01
Chr04	irgsp1_rep	mRNA	8588650	8594181	.	+	.	ID=Os04t0228300-01;Name=Os04t0228300-01;Locus_id=Os04g0228300;Note=Hypothetical conserved gene.;Transcript_evidence=AK100755 (DDBJ%2C Best hit);ORF_evidence=B9F821 (UniProt);NIAS_FLcDNA=J023118N19;TENOR=Os04t0228300-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	8588650	8589070	.	+	.	Parent=Os04t0228300-01
Chr04	irgsp1_rep	five_prime_UTR	8589342	8589448	.	+	.	Parent=Os04t0228300-01
Chr04	irgsp1_rep	five_prime_UTR	8589557	8589653	.	+	.	Parent=Os04t0228300-01
Chr04	irgsp1_rep	five_prime_UTR	8589860	8589905	.	+	.	Parent=Os04t0228300-01
Chr04	irgsp1_rep	five_prime_UTR	8590051	8591016	.	+	.	Parent=Os04t0228300-01
Chr04	irgsp1_rep	five_prime_UTR	8591111	8591458	.	+	.	Parent=Os04t0228300-01
Chr04	irgsp1_rep	five_prime_UTR	8591569	8591630	.	+	.	Parent=Os04t0228300-01
Chr04	irgsp1_rep	five_prime_UTR	8591706	8591783	.	+	.	Parent=Os04t0228300-01
Chr04	irgsp1_rep	CDS	8591784	8591786	.	+	0	Parent=Os04t0228300-01
Chr04	irgsp1_rep	CDS	8592182	8592269	.	+	0	Parent=Os04t0228300-01
Chr04	irgsp1_rep	CDS	8593016	8593099	.	+	2	Parent=Os04t0228300-01
Chr04	irgsp1_rep	CDS	8593288	8593316	.	+	2	Parent=Os04t0228300-01
Chr04	irgsp1_rep	three_prime_UTR	8593317	8593413	.	+	.	Parent=Os04t0228300-01
Chr04	irgsp1_rep	three_prime_UTR	8593567	8594181	.	+	.	Parent=Os04t0228300-01
Chr04	irgsp1_rep	mRNA	8599014	8600248	.	+	.	ID=Os04t0228400-01;Name=Os04t0228400-01;Locus_id=Os04g0228400;CGSNL Gene Symbol=EXPA1;CGSNL Gene Name=ALPHA-EXPANSIN 1;Oryzabase Gene Symbol Synonym(s)=OsEXP1%2C EXPA1%2C OsEXPA1%2C OsaEXPa1.16%2C RiExA;Oryzabase Gene Name Synonym(s)=Rice expansin-1%2C Expansin-A1%2C Alpha-expansin-1%2C Expansin S2;Note=Expansin precursor (Alpha-expansin OsEXPA1).;Transcript_evidence=AK069548 (DDBJ%2C Best hit);ORF_evidence=Q01MC7 (UniProt);GO=Biological Process: plant-type cell wall organization (GO:0009664),Cellular Component: extracellular region (GO:0005576);InterPro=Expansin (IPR002963),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);NIAS_FLcDNA=J023022N21;Oryzabase=2964;Expression=AK069548;TENOR=Os04t0228400-01;KEGG=Os04t0228400-01
Chr04	irgsp1_rep	five_prime_UTR	8599014	8599054	.	+	.	Parent=Os04t0228400-01
Chr04	irgsp1_rep	CDS	8599055	8599208	.	+	0	Parent=Os04t0228400-01
Chr04	irgsp1_rep	CDS	8599309	8599940	.	+	2	Parent=Os04t0228400-01
Chr04	irgsp1_rep	three_prime_UTR	8599941	8600248	.	+	.	Parent=Os04t0228400-01
Chr04	irgsp1_rep	mRNA	8614296	8616079	.	-	.	ID=Os04t0228600-00;Name=Os04t0228600-00;Locus_id=Os04g0228600;Note=Similar to H0209A05.7 protein.;Transcript_evidence=BT066778 (DDBJ);ORF_evidence=Q01MC5 (UniProt);TENOR=Os04t0228600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	8615813	8616079	.	-	0	Parent=Os04t0228600-00
Chr04	irgsp1_rep	CDS	8615340	8615551	.	-	0	Parent=Os04t0228600-00
Chr04	irgsp1_rep	CDS	8615262	8615262	.	-	1	Parent=Os04t0228600-00
Chr04	irgsp1_rep	three_prime_UTR	8615170	8615261	.	-	.	Parent=Os04t0228600-00
Chr04	irgsp1_rep	three_prime_UTR	8614850	8614951	.	-	.	Parent=Os04t0228600-00
Chr04	irgsp1_rep	three_prime_UTR	8614296	8614764	.	-	.	Parent=Os04t0228600-00
Chr04	irgsp1_rep	mRNA	8637314	8639345	.	-	.	ID=Os04t0229100-01;Name=Os04t0229100-01;Locus_id=Os04g0229100;CGSNL Gene Symbol=CAD6;CGSNL Gene Name=CINNAMYL ALCOHOL DEHYDROGENASE 6;Oryzabase Gene Symbol Synonym(s)=OsCAD6;Oryzabase Gene Name Synonym(s)=Cinnamyl alcohol dehydrogenase 6;Note=Similar to Sinapyl alcohol dehydrogenase.;Transcript_evidence=AK071484 (DDBJ%2C Best hit),AK099270 (DDBJ%2C Best hit);ORF_evidence=Q01MC2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),Alcohol dehydrogenase%2C zinc-type%2C conserved site (IPR002328),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040),Polyketide synthase%2C enoylreductase (IPR020843);NIAS_FLcDNA=J023091M10,J023021L06;Oryzabase=10435;Expression=AK071484;TENOR=Os04t0229100-01;KEGG=Os04t0229100-01
Chr04	irgsp1_rep	five_prime_UTR	8639249	8639345	.	-	.	Parent=Os04t0229100-01
Chr04	irgsp1_rep	CDS	8639157	8639248	.	-	0	Parent=Os04t0229100-01
Chr04	irgsp1_rep	CDS	8638427	8639063	.	-	1	Parent=Os04t0229100-01
Chr04	irgsp1_rep	CDS	8637813	8637966	.	-	0	Parent=Os04t0229100-01
Chr04	irgsp1_rep	CDS	8637510	8637709	.	-	2	Parent=Os04t0229100-01
Chr04	irgsp1_rep	three_prime_UTR	8637314	8637509	.	-	.	Parent=Os04t0229100-01
Chr04	irgsp1_rep	mRNA	8749478	8749878	.	+	.	ID=Os04t0230501-00;Name=Os04t0230501-00;Locus_id=Os04g0230501;Note=Hypothetical protein.;Transcript_evidence=AK372466 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0230501-00
Chr04	irgsp1_rep	CDS	8749478	8749878	.	+	0	Parent=Os04t0230501-00
Chr04	irgsp1_rep	mRNA	8764872	8767208	.	+	.	ID=Os04t0231200-01;Name=Os04t0231200-01;Locus_id=Os04g0231200;Note=Hypothetical gene.;Transcript_evidence=AK111289 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=002-180-H12;Expression=AK111289;TENOR=Os04t0231200-01;KEGG=Os04t0231200-01
Chr04	irgsp1_rep	five_prime_UTR	8764872	8764872	.	+	.	Parent=Os04t0231200-01
Chr04	irgsp1_rep	CDS	8764873	8765068	.	+	0	Parent=Os04t0231200-01
Chr04	irgsp1_rep	CDS	8765384	8765430	.	+	2	Parent=Os04t0231200-01
Chr04	irgsp1_rep	three_prime_UTR	8765431	8765581	.	+	.	Parent=Os04t0231200-01
Chr04	irgsp1_rep	three_prime_UTR	8766966	8767208	.	+	.	Parent=Os04t0231200-01
Chr04	irgsp1_rep	mRNA	8767202	8767534	.	-	.	ID=Os04t0231266-00;Name=Os04t0231266-00;Locus_id=Os04g0231266;Note=Conserved hypothetical protein.;Transcript_evidence=EU943542 (DDBJ);ORF_evidence=XP_002447627.1 (RefSeq);TENOR=Os04t0231266-00
Chr04	irgsp1_rep	CDS	8767367	8767534	.	-	0	Parent=Os04t0231266-00
Chr04	irgsp1_rep	three_prime_UTR	8767202	8767366	.	-	.	Parent=Os04t0231266-00
Chr04	irgsp1_rep	mRNA	8811012	8815165	.	-	.	ID=Os04t0231800-01;Name=Os04t0231800-01;Locus_id=Os04g0231800;Note=Conserved hypothetical protein.;Transcript_evidence=AK068417 (DDBJ%2C Best hit);ORF_evidence=NP_001176877.1 (RefSeq);NIAS_FLcDNA=J013153L19;TENOR=Os04t0231800-01
Chr04	irgsp1_rep	five_prime_UTR	8815068	8815165	.	-	.	Parent=Os04t0231800-01
Chr04	irgsp1_rep	CDS	8814855	8815067	.	-	0	Parent=Os04t0231800-01
Chr04	irgsp1_rep	three_prime_UTR	8814704	8814854	.	-	.	Parent=Os04t0231800-01
Chr04	irgsp1_rep	three_prime_UTR	8814515	8814614	.	-	.	Parent=Os04t0231800-01
Chr04	irgsp1_rep	three_prime_UTR	8812643	8812699	.	-	.	Parent=Os04t0231800-01
Chr04	irgsp1_rep	three_prime_UTR	8811012	8811305	.	-	.	Parent=Os04t0231800-01
Chr04	irgsp1_rep	mRNA	8948360	8949943	.	-	.	ID=Os04t0233400-01;Name=Os04t0233400-01;Locus_id=Os04g0233400;CGSNL Gene Symbol=PIP2%3B6;CGSNL Gene Name=PLASMA MEMBRANE INTRINSIC PROTEIN 2%3B6;Oryzabase Gene Symbol Synonym(s)=OsPIP2%3B6%2C PIP2-6%2C OsPIP2-5;Oryzabase Gene Name Synonym(s)=Probable aquaporin PIP2-6%2C Plasma membrane intrinsic protein 2-6;Note=Similar to Arabidopsis thaliana (Fragment).;Transcript_evidence=AK102155 (DDBJ%2C Best hit),AK061312 (DDBJ%2C Best hit),AK061491 (DDBJ%2C Best hit);ORF_evidence=A8VRJ3 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: water transport (GO:0006833),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Aquaporin (IPR012269),Major intrinsic protein%2C conserved site (IPR022357),Aquaporin-like (IPR023271);NIAS_FLcDNA=J033086E18,006-302-B10,006-309-B05;Oryzabase=8514;TENOR=Os04t0233400-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	8949846	8949943	.	-	.	Parent=Os04t0233400-01
Chr04	irgsp1_rep	CDS	8949554	8949845	.	-	0	Parent=Os04t0233400-01
Chr04	irgsp1_rep	CDS	8949169	8949464	.	-	2	Parent=Os04t0233400-01
Chr04	irgsp1_rep	CDS	8948923	8949063	.	-	0	Parent=Os04t0233400-01
Chr04	irgsp1_rep	CDS	8948720	8948839	.	-	0	Parent=Os04t0233400-01
Chr04	irgsp1_rep	three_prime_UTR	8948360	8948719	.	-	.	Parent=Os04t0233400-01
Chr04	irgsp1_rep	mRNA	8948488	8949831	.	-	.	ID=Os04t0233400-02;Name=Os04t0233400-02;Locus_id=Os04g0233400;CGSNL Gene Symbol=PIP2%3B6;CGSNL Gene Name=PLASMA MEMBRANE INTRINSIC PROTEIN 2%3B6;Oryzabase Gene Symbol Synonym(s)=OsPIP2%3B6%2C PIP2-6%2C OsPIP2-5;Oryzabase Gene Name Synonym(s)=Probable aquaporin PIP2-6%2C Plasma membrane intrinsic protein 2-6;Note=Similar to cDNA clone:006-302-B10%2C full insert sequence.;Transcript_evidence=AK119661 (DDBJ%2C Best hit);ORF_evidence=B7E653 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: water transport (GO:0006833),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Aquaporin (IPR012269),Major intrinsic protein%2C conserved site (IPR022357),Aquaporin-like (IPR023271);NIAS_FLcDNA=002-141-B01;Oryzabase=8514;Expression=AK119661;TENOR=Os04t0233400-02;KEGG=Os04t0233400-02;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	8949831	8949831	.	-	.	Parent=Os04t0233400-02
Chr04	irgsp1_rep	CDS	8949554	8949830	.	-	0	Parent=Os04t0233400-02
Chr04	irgsp1_rep	CDS	8949169	8949464	.	-	2	Parent=Os04t0233400-02
Chr04	irgsp1_rep	CDS	8948923	8949063	.	-	0	Parent=Os04t0233400-02
Chr04	irgsp1_rep	CDS	8948720	8948839	.	-	0	Parent=Os04t0233400-02
Chr04	irgsp1_rep	three_prime_UTR	8948488	8948719	.	-	.	Parent=Os04t0233400-02
Chr04	irgsp1_rep	mRNA	8948714	8949839	.	+	.	ID=Os04t0233851-00;Name=Os04t0233851-00;Locus_id=Os04g0233851;Note=Non-protein coding transcript.;Transcript_evidence=FP096444 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0233851-00
Chr04	irgsp1_rep	exon	8948714	8948843	.	+	.	Parent=Os04t0233851-00
Chr04	irgsp1_rep	exon	8948927	8949061	.	+	.	Parent=Os04t0233851-00
Chr04	irgsp1_rep	exon	8949167	8949456	.	+	.	Parent=Os04t0233851-00
Chr04	irgsp1_rep	exon	8949547	8949839	.	+	.	Parent=Os04t0233851-00
Chr04	irgsp1_rep	mRNA	9071858	9072447	.	+	.	ID=Os04t0234402-00;Name=Os04t0234402-00;Locus_id=Os04g0234402;Note=Similar to hydrolase%2C acting on ester bonds.;Transcript_evidence=AK331210 (DDBJ);ORF_evidence=B6U8P0 (UniProt);TENOR=Os04t0234402-00;KEGG=Os04t0234402-00
Chr04	irgsp1_rep	five_prime_UTR	9071858	9071910	.	+	.	Parent=Os04t0234402-00
Chr04	irgsp1_rep	CDS	9071911	9072168	.	+	0	Parent=Os04t0234402-00
Chr04	irgsp1_rep	three_prime_UTR	9072169	9072228	.	+	.	Parent=Os04t0234402-00
Chr04	irgsp1_rep	three_prime_UTR	9072288	9072447	.	+	.	Parent=Os04t0234402-00
Chr04	irgsp1_rep	mRNA	9072024	9072652	.	-	.	ID=Os04t0234500-00;Name=Os04t0234500-00;Locus_id=Os04g0234500;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os04t0234500-00;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	9072424	9072652	.	-	0	Parent=Os04t0234500-00
Chr04	irgsp1_rep	CDS	9072024	9072196	.	-	2	Parent=Os04t0234500-00
Chr04	irgsp1_rep	mRNA	9075232	9077888	.	-	.	ID=Os04t0234600-01;Name=Os04t0234600-01;Locus_id=Os04g0234600;RAP-DB Gene Symbol Synonym(s)=OsSBPase;RAP-DB Gene Name Synonym(s)=sedoheptulose 1%2C7-bisphosphatase;Oryzabase Gene Symbol Synonym(s)=FBPase%2C OsFBPase;Oryzabase Gene Name Synonym(s)=Fru-1%2C6-bisphosphatase;Note=Sedoheptulose 1%2C7-bisphosphatase involved in Calvin cycle%2C Plant growth and grain yield;Transcript_evidence=AK119209;ORF_evidence=B9F813;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: phosphatase activity (GO:0016791),Molecular Function: phosphoric ester hydrolase activity (GO:0042578);InterPro=Fructose-1%2C6-bisphosphatase class 1 (IPR000146),Sedoheptulose-1%2C7-bisphosphatase (IPR023079),Fructose-1-6-bisphosphatase class I%2C N-terminal (IPR033391),Fructose-1%2C6-bisphosphatase%2C active site (IPR020548);NIAS_FLcDNA=001-041-E03;Manual Curation=July 27%2C 2020;Literature_PMID=32698774;Oryzabase=23495;TENOR=Os04t0234600-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=chloroplast (GO:0009507)
Chr04	irgsp1_rep	five_prime_UTR	9077673	9077888	.	-	.	Parent=Os04t0234600-01
Chr04	irgsp1_rep	CDS	9077574	9077672	.	-	0	Parent=Os04t0234600-01
Chr04	irgsp1_rep	CDS	9077342	9077476	.	-	0	Parent=Os04t0234600-01
Chr04	irgsp1_rep	CDS	9077060	9077245	.	-	0	Parent=Os04t0234600-01
Chr04	irgsp1_rep	CDS	9076863	9076944	.	-	0	Parent=Os04t0234600-01
Chr04	irgsp1_rep	CDS	9076340	9076561	.	-	2	Parent=Os04t0234600-01
Chr04	irgsp1_rep	CDS	9076153	9076253	.	-	2	Parent=Os04t0234600-01
Chr04	irgsp1_rep	CDS	9075992	9076063	.	-	0	Parent=Os04t0234600-01
Chr04	irgsp1_rep	CDS	9075442	9075723	.	-	0	Parent=Os04t0234600-01
Chr04	irgsp1_rep	three_prime_UTR	9075232	9075441	.	-	.	Parent=Os04t0234600-01
Chr04	irgsp1_rep	mRNA	9075295	9077800	.	-	.	ID=Os04t0234600-02;Name=Os04t0234600-02;Locus_id=Os04g0234600;Oryzabase Gene Symbol Synonym(s)=FBPase%2C OsFBPase%2C OsSBPase%2C SBPase;Oryzabase Gene Name Synonym(s)=Fru-1%2C 6-bisphosphatase%2C sedoheptulose 1%2C 7-bisphosphatase;Note=Similar to Sedoheptulose-1%2C7-bisphosphatase.;Transcript_evidence=AK062081 (DDBJ%2C Best hit);ORF_evidence=Q84JG8 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: phosphoric ester hydrolase activity (GO:0042578);InterPro=Fructose-1%2C6-bisphosphatase class 1/Sedoheputulose-1%2C7-bisphosphatase (IPR000146),Fructose-1%2C6-bisphosphatase%2C active site (IPR020548),Sedoheptulose-1%2C7-bisphosphatase (IPR023079);NIAS_FLcDNA=001-044-F10;Oryzabase=23495;TENOR=Os04t0234600-02;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	9077673	9077800	.	-	.	Parent=Os04t0234600-02
Chr04	irgsp1_rep	CDS	9077574	9077672	.	-	0	Parent=Os04t0234600-02
Chr04	irgsp1_rep	CDS	9077342	9077476	.	-	0	Parent=Os04t0234600-02
Chr04	irgsp1_rep	CDS	9077060	9077245	.	-	0	Parent=Os04t0234600-02
Chr04	irgsp1_rep	CDS	9076863	9076944	.	-	0	Parent=Os04t0234600-02
Chr04	irgsp1_rep	CDS	9076340	9076561	.	-	2	Parent=Os04t0234600-02
Chr04	irgsp1_rep	CDS	9076153	9076253	.	-	2	Parent=Os04t0234600-02
Chr04	irgsp1_rep	CDS	9075992	9076063	.	-	0	Parent=Os04t0234600-02
Chr04	irgsp1_rep	CDS	9075442	9075723	.	-	0	Parent=Os04t0234600-02
Chr04	irgsp1_rep	three_prime_UTR	9075295	9075441	.	-	.	Parent=Os04t0234600-02
Chr04	irgsp1_rep	mRNA	9075141	9077732	.	-	.	ID=Os04t0234600-03;Name=Os04t0234600-03;Locus_id=Os04g0234600;Oryzabase Gene Symbol Synonym(s)=FBPase%2C OsFBPase%2C OsSBPase%2C SBPase;Oryzabase Gene Name Synonym(s)=Fru-1%2C 6-bisphosphatase%2C sedoheptulose 1%2C 7-bisphosphatase;Note=Similar to Sedoheptulose-1%2C7-bisphosphatase.;Transcript_evidence=AK065773 (DDBJ%2C Best hit);ORF_evidence=Q84JG8 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: phosphoric ester hydrolase activity (GO:0042578);InterPro=Fructose-1%2C6-bisphosphatase class 1/Sedoheputulose-1%2C7-bisphosphatase (IPR000146),Fructose-1%2C6-bisphosphatase%2C active site (IPR020548),Sedoheptulose-1%2C7-bisphosphatase (IPR023079);NIAS_FLcDNA=J013039M24;Oryzabase=23495;TENOR=Os04t0234600-03;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	9077673	9077732	.	-	.	Parent=Os04t0234600-03
Chr04	irgsp1_rep	CDS	9077574	9077672	.	-	0	Parent=Os04t0234600-03
Chr04	irgsp1_rep	CDS	9077342	9077476	.	-	0	Parent=Os04t0234600-03
Chr04	irgsp1_rep	CDS	9077060	9077245	.	-	0	Parent=Os04t0234600-03
Chr04	irgsp1_rep	CDS	9076863	9076944	.	-	0	Parent=Os04t0234600-03
Chr04	irgsp1_rep	CDS	9076340	9076561	.	-	2	Parent=Os04t0234600-03
Chr04	irgsp1_rep	CDS	9076153	9076253	.	-	2	Parent=Os04t0234600-03
Chr04	irgsp1_rep	CDS	9075992	9076063	.	-	0	Parent=Os04t0234600-03
Chr04	irgsp1_rep	CDS	9075442	9075723	.	-	0	Parent=Os04t0234600-03
Chr04	irgsp1_rep	three_prime_UTR	9075141	9075441	.	-	.	Parent=Os04t0234600-03
Chr04	irgsp1_rep	mRNA	9262698	9265370	.	-	.	ID=Os04t0243400-01;Name=Os04t0243400-01;Locus_id=Os04g0243400;Note=Myb/SANT-like domain domain containing protein.;Transcript_evidence=AK104960 (DDBJ%2C Best hit),AK070633 (DDBJ%2C Best hit);ORF_evidence=Q7FA01 (UniProt);InterPro=Myb/SANT-like domain (IPR024752);NIAS_FLcDNA=001-115-C10,J023058B16;TENOR=Os04t0243400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	9265127	9265370	.	-	.	Parent=Os04t0243400-01
Chr04	irgsp1_rep	five_prime_UTR	9264807	9264845	.	-	.	Parent=Os04t0243400-01
Chr04	irgsp1_rep	CDS	9264761	9264806	.	-	0	Parent=Os04t0243400-01
Chr04	irgsp1_rep	CDS	9264133	9264569	.	-	2	Parent=Os04t0243400-01
Chr04	irgsp1_rep	CDS	9263460	9263768	.	-	0	Parent=Os04t0243400-01
Chr04	irgsp1_rep	CDS	9262887	9263384	.	-	0	Parent=Os04t0243400-01
Chr04	irgsp1_rep	three_prime_UTR	9262698	9262886	.	-	.	Parent=Os04t0243400-01
Chr04	irgsp1_rep	mRNA	9273695	9274013	.	-	.	ID=Os04t0243550-00;Name=Os04t0243550-00;Locus_id=Os04g0243550;Note=Hypothetical protein.;Transcript_evidence=EU957446 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0243550-00
Chr04	irgsp1_rep	five_prime_UTR	9274012	9274013	.	-	.	Parent=Os04t0243550-00
Chr04	irgsp1_rep	CDS	9273695	9274011	.	-	0	Parent=Os04t0243550-00
Chr04	irgsp1_rep	mRNA	9291339	9291856	.	-	.	ID=Os04t0243700-01;Name=Os04t0243700-01;Locus_id=Os04g0243700;Oryzabase Gene Symbol Synonym(s)=OsCTR1;Oryzabase Gene Name Synonym(s)=chloroplast targeting RING E3 ligase 1;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK059146 (DDBJ%2C Best hit);ORF_evidence=B6SXD0 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=001-023-B01;Oryzabase=15290;Expression=AK059146;TENOR=Os04t0243700-01;KEGG=Os04t0243700-01
Chr04	irgsp1_rep	five_prime_UTR	9291829	9291856	.	-	.	Parent=Os04t0243700-01
Chr04	irgsp1_rep	CDS	9291481	9291828	.	-	0	Parent=Os04t0243700-01
Chr04	irgsp1_rep	three_prime_UTR	9291339	9291480	.	-	.	Parent=Os04t0243700-01
Chr04	irgsp1_rep	mRNA	9330721	9334127	.	-	.	ID=Os04t0244201-01;Name=Os04t0244201-01;Locus_id=Os04g0244201;Note=Hypothetical protein.;Transcript_evidence=AK289145 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090099J09;TENOR=Os04t0244201-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	9332655	9334127	.	-	.	Parent=Os04t0244201-01
Chr04	irgsp1_rep	CDS	9332271	9332654	.	-	0	Parent=Os04t0244201-01
Chr04	irgsp1_rep	three_prime_UTR	9330721	9332270	.	-	.	Parent=Os04t0244201-01
Chr04	irgsp1_rep	mRNA	9336868	9345274	.	+	.	ID=Os04t0244400-01;Name=Os04t0244400-01;Locus_id=Os04g0244400;CGSNL Gene Symbol=GRX12;CGSNL Gene Name=GLUTAREDOXIN 12;Oryzabase Gene Symbol Synonym(s)=OsGRX12;Oryzabase Gene Name Synonym(s)=glutaredoxin 12;Note=Thioredoxin fold domain containing protein.;Transcript_evidence=AK103892 (DDBJ%2C Best hit);ORF_evidence=Q01HL6 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin (IPR002109),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Glutaredoxin active site (IPR011767),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=J033150E08;Oryzabase=13587;Expression=AK103892;TENOR=Os04t0244400-01;KEGG=Os04t0244400-01
Chr04	irgsp1_rep	five_prime_UTR	9336868	9336961	.	+	.	Parent=Os04t0244400-01
Chr04	irgsp1_rep	CDS	9336962	9337286	.	+	0	Parent=Os04t0244400-01
Chr04	irgsp1_rep	CDS	9341030	9341164	.	+	2	Parent=Os04t0244400-01
Chr04	irgsp1_rep	CDS	9341296	9341371	.	+	2	Parent=Os04t0244400-01
Chr04	irgsp1_rep	CDS	9342252	9342346	.	+	1	Parent=Os04t0244400-01
Chr04	irgsp1_rep	CDS	9344439	9344606	.	+	2	Parent=Os04t0244400-01
Chr04	irgsp1_rep	CDS	9344720	9344880	.	+	2	Parent=Os04t0244400-01
Chr04	irgsp1_rep	three_prime_UTR	9344881	9345274	.	+	.	Parent=Os04t0244400-01
Chr04	irgsp1_rep	mRNA	9336934	9345040	.	+	.	ID=Os04t0244400-02;Name=Os04t0244400-02;Locus_id=Os04g0244400;CGSNL Gene Symbol=GRX12;CGSNL Gene Name=GLUTAREDOXIN 12;Oryzabase Gene Symbol Synonym(s)=OsGRX12;Oryzabase Gene Name Synonym(s)=glutaredoxin 12;Note=Thioredoxin fold domain containing protein.;Transcript_evidence=AK061168 (DDBJ%2C Best hit);ORF_evidence=Q01HL6 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin (IPR002109),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Glutaredoxin active site (IPR011767),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=006-209-A12;Oryzabase=13587;Expression=AK061168;TENOR=Os04t0244400-02;KEGG=Os04t0244400-02
Chr04	irgsp1_rep	five_prime_UTR	9336934	9336961	.	+	.	Parent=Os04t0244400-02
Chr04	irgsp1_rep	CDS	9336962	9337286	.	+	0	Parent=Os04t0244400-02
Chr04	irgsp1_rep	CDS	9341030	9341164	.	+	2	Parent=Os04t0244400-02
Chr04	irgsp1_rep	CDS	9341296	9341371	.	+	2	Parent=Os04t0244400-02
Chr04	irgsp1_rep	CDS	9342252	9342346	.	+	1	Parent=Os04t0244400-02
Chr04	irgsp1_rep	CDS	9344439	9344606	.	+	2	Parent=Os04t0244400-02
Chr04	irgsp1_rep	CDS	9344720	9344880	.	+	2	Parent=Os04t0244400-02
Chr04	irgsp1_rep	three_prime_UTR	9344881	9345040	.	+	.	Parent=Os04t0244400-02
Chr04	irgsp1_rep	mRNA	9347671	9359330	.	+	.	ID=Os04t0244500-01;Name=Os04t0244500-01;Locus_id=Os04g0244500;Note=Protein of unknown function DUF171 family protein.;Transcript_evidence=AK065922 (DDBJ%2C Best hit);ORF_evidence=Q01HL5 (UniProt);InterPro=Protein of unknown function DUF171 (IPR003750),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=J013047P15;TENOR=Os04t0244500-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	9347671	9347712	.	+	.	Parent=Os04t0244500-01
Chr04	irgsp1_rep	CDS	9347713	9347979	.	+	0	Parent=Os04t0244500-01
Chr04	irgsp1_rep	CDS	9348047	9348247	.	+	0	Parent=Os04t0244500-01
Chr04	irgsp1_rep	CDS	9348335	9348401	.	+	0	Parent=Os04t0244500-01
Chr04	irgsp1_rep	CDS	9354850	9354908	.	+	2	Parent=Os04t0244500-01
Chr04	irgsp1_rep	CDS	9356049	9356127	.	+	0	Parent=Os04t0244500-01
Chr04	irgsp1_rep	CDS	9356612	9356730	.	+	2	Parent=Os04t0244500-01
Chr04	irgsp1_rep	CDS	9356807	9356886	.	+	0	Parent=Os04t0244500-01
Chr04	irgsp1_rep	CDS	9357916	9357985	.	+	1	Parent=Os04t0244500-01
Chr04	irgsp1_rep	CDS	9358736	9358813	.	+	0	Parent=Os04t0244500-01
Chr04	irgsp1_rep	CDS	9358894	9358950	.	+	0	Parent=Os04t0244500-01
Chr04	irgsp1_rep	three_prime_UTR	9358951	9359330	.	+	.	Parent=Os04t0244500-01
Chr04	irgsp1_rep	mRNA	9368053	9369130	.	-	.	ID=Os04t0244800-01;Name=Os04t0244800-01;Locus_id=Os04g0244800;CGSNL Gene Symbol=HMP24;CGSNL Gene Name=HEAVY METAL-ASSOCIATED PROTEIN 24;Oryzabase Gene Symbol Synonym(s)=OsHMP24;Oryzabase Gene Name Synonym(s)=Heavy metal-associated protein 24;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK121488 (DDBJ%2C Best hit);ORF_evidence=Q01HL4 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);NIAS_FLcDNA=J023150J09;Oryzabase=23545;Expression=AK121488;TENOR=Os04t0244800-01;KEGG=Os04t0244800-01
Chr04	irgsp1_rep	five_prime_UTR	9368993	9369130	.	-	.	Parent=Os04t0244800-01
Chr04	irgsp1_rep	CDS	9368912	9368992	.	-	0	Parent=Os04t0244800-01
Chr04	irgsp1_rep	CDS	9368680	9368755	.	-	0	Parent=Os04t0244800-01
Chr04	irgsp1_rep	CDS	9368248	9368558	.	-	2	Parent=Os04t0244800-01
Chr04	irgsp1_rep	three_prime_UTR	9368053	9368247	.	-	.	Parent=Os04t0244800-01
Chr04	irgsp1_rep	mRNA	9386966	9391961	.	-	.	ID=Os04t0245000-00;Name=Os04t0245000-00;Locus_id=Os04g0245000;Oryzabase Gene Symbol Synonym(s)=OsFH12%2C FH12%2C OsPP62%2C OsSTA117%2C PP62%2C STA117;Oryzabase Gene Name Synonym(s)=formin homology 12%2C forming family protein 12%2C FH2 protein 12%2C FH2 domain protein 12%2C Protein phosphatase 62;Note=Formin-like protein 12.;Transcript_evidence=Q7XWS7 (UniProt);ORF_evidence=Q7XWS7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium/lipid-binding domain%2C CaLB (IPR008973),Tensin phosphatase%2C C2 domain (IPR014020);Oryzabase=21782;TENOR=Os04t0245000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	9391227	9391961	.	-	0	Parent=Os04t0245000-00
Chr04	irgsp1_rep	CDS	9390935	9391159	.	-	0	Parent=Os04t0245000-00
Chr04	irgsp1_rep	CDS	9389051	9390851	.	-	0	Parent=Os04t0245000-00
Chr04	irgsp1_rep	CDS	9388384	9388566	.	-	2	Parent=Os04t0245000-00
Chr04	irgsp1_rep	CDS	9386966	9387834	.	-	2	Parent=Os04t0245000-00
Chr04	irgsp1_rep	mRNA	9562969	9564711	.	-	.	ID=Os04t0247500-01;Name=Os04t0247500-01;Locus_id=Os04g0247500;Note=Conserved hypothetical protein.;Transcript_evidence=AK100644 (DDBJ%2C Best hit);ORF_evidence=B9GCU0 (UniProt);NIAS_FLcDNA=J023110K05;TENOR=Os04t0247500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	9563710	9564711	.	-	.	Parent=Os04t0247500-01
Chr04	irgsp1_rep	five_prime_UTR	9563545	9563627	.	-	.	Parent=Os04t0247500-01
Chr04	irgsp1_rep	CDS	9563224	9563544	.	-	0	Parent=Os04t0247500-01
Chr04	irgsp1_rep	three_prime_UTR	9562969	9563223	.	-	.	Parent=Os04t0247500-01
Chr04	irgsp1_rep	mRNA	9562465	9564684	.	-	.	ID=Os04t0247500-02;Name=Os04t0247500-02;Locus_id=Os04g0247500;Note=Conserved hypothetical protein.;Transcript_evidence=AK066605 (DDBJ%2C Best hit);ORF_evidence=B9GCU0 (UniProt);NIAS_FLcDNA=J013068D24;TENOR=Os04t0247500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	9563710	9564684	.	-	.	Parent=Os04t0247500-02
Chr04	irgsp1_rep	five_prime_UTR	9563545	9563627	.	-	.	Parent=Os04t0247500-02
Chr04	irgsp1_rep	CDS	9563341	9563544	.	-	0	Parent=Os04t0247500-02
Chr04	irgsp1_rep	CDS	9562815	9562838	.	-	0	Parent=Os04t0247500-02
Chr04	irgsp1_rep	three_prime_UTR	9562465	9562814	.	-	.	Parent=Os04t0247500-02
Chr04	irgsp1_rep	mRNA	9571289	9572114	.	-	.	ID=Os04t0247700-00;Name=Os04t0247700-00;Locus_id=Os04g0247700;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);InterPro=Ribonuclease H1%2C N-terminal (IPR011320);TENOR=Os04t0247700-00
Chr04	irgsp1_rep	five_prime_UTR	9572111	9572114	.	-	.	Parent=Os04t0247700-00
Chr04	irgsp1_rep	CDS	9571289	9572110	.	-	0	Parent=Os04t0247700-00
Chr04	irgsp1_rep	mRNA	9575909	9575970	.	+	.	ID=Os04t0247875-00;Name=Os04t0247875-00;Locus_id=Os04g0247875;Note=Non-protein coding transcript.;Transcript_evidence=EU941912 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0247875-00
Chr04	irgsp1_rep	exon	9575909	9575970	.	+	.	Parent=Os04t0247875-00
Chr04	irgsp1_rep	mRNA	9581872	9587958	.	-	.	ID=Os04t0248050-00;Name=Os04t0248050-00;Locus_id=Os04g0248050;Note=Conserved hypothetical protein.;Transcript_evidence=AK241240 (DDBJ%2C Secondary hit);ORF_evidence=NP_001174319.1 (RefSeq);TENOR=Os04t0248050-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	9587680	9587958	.	-	0	Parent=Os04t0248050-00
Chr04	irgsp1_rep	three_prime_UTR	9586879	9587679	.	-	.	Parent=Os04t0248050-00
Chr04	irgsp1_rep	three_prime_UTR	9581872	9582594	.	-	.	Parent=Os04t0248050-00
Chr04	irgsp1_rep	mRNA	9662138	9667057	.	-	.	ID=Os04t0249500-01;Name=Os04t0249500-01;Locus_id=Os04g0249500;RAP-DB Gene Symbol Synonym(s)=OsSUS7;RAP-DB Gene Name Synonym(s)=sucrose synthase 7;CGSNL Gene Symbol=RSUS7;CGSNL Gene Name=SUCROSE SYNTHASE 7;Oryzabase Gene Symbol Synonym(s)=SUS7%2C SS7%2C OsScS7%2C RSs7%2C RSus7%2C OsSUS7;Oryzabase Gene Name Synonym(s)=Rice sucrose synthase-7%2C Sucrose synthase 7%2C Sucrose-UDP glucosyltransferase 7%2C Sucrose synthase-7%2C rice SuSy gene 7;Note=Sucrose synthase%2C Duplicate of OsSUS5 (Os04g0309600);Transcript_evidence=HQ895725;ORF_evidence=Q7XNX6;GO=Biological Process: sucrose metabolic process (GO:0005985),Molecular Function: sucrose synthase activity (GO:0016157);InterPro=Sucrose synthase%2C plant/cyanobacteria (IPR012820),Sucrose synthase (IPR000368),Glycosyl transferase%2C family 1 (IPR001296);Manual Curation=September 9%2C 2020;Literature_PMID=21533550;Oryzabase=14343;TENOR=Os04t0249500-00;KEGG=Os04t0249500-00;Subcellular location=plasma membrane (GO:0005886) [mainly], cytosol (GO:0005829)
Chr04	irgsp1_rep	CDS	9666957	9667057	.	-	0	Parent=Os04t0249500-01
Chr04	irgsp1_rep	CDS	9666271	9666403	.	-	1	Parent=Os04t0249500-01
Chr04	irgsp1_rep	CDS	9666024	9666178	.	-	0	Parent=Os04t0249500-01
Chr04	irgsp1_rep	CDS	9665702	9665894	.	-	1	Parent=Os04t0249500-01
Chr04	irgsp1_rep	CDS	9665496	9665614	.	-	0	Parent=Os04t0249500-01
Chr04	irgsp1_rep	CDS	9665194	9665410	.	-	1	Parent=Os04t0249500-01
Chr04	irgsp1_rep	CDS	9664977	9665072	.	-	0	Parent=Os04t0249500-01
Chr04	irgsp1_rep	CDS	9664658	9664834	.	-	0	Parent=Os04t0249500-01
Chr04	irgsp1_rep	CDS	9664451	9664567	.	-	0	Parent=Os04t0249500-01
Chr04	irgsp1_rep	CDS	9664178	9664344	.	-	0	Parent=Os04t0249500-01
Chr04	irgsp1_rep	CDS	9663838	9664062	.	-	1	Parent=Os04t0249500-01
Chr04	irgsp1_rep	CDS	9663369	9663690	.	-	1	Parent=Os04t0249500-01
Chr04	irgsp1_rep	CDS	9662874	9663118	.	-	0	Parent=Os04t0249500-01
Chr04	irgsp1_rep	CDS	9662617	9662755	.	-	1	Parent=Os04t0249500-01
Chr04	irgsp1_rep	CDS	9662426	9662517	.	-	0	Parent=Os04t0249500-01
Chr04	irgsp1_rep	CDS	9662307	9662330	.	-	1	Parent=Os04t0249500-01
Chr04	irgsp1_rep	CDS	9662138	9662183	.	-	1	Parent=Os04t0249500-01
Chr04	irgsp1_rep	mRNA	9662876	9665409	.	+	.	ID=Os04t0249550-00;Name=Os04t0249550-00;Locus_id=Os04g0249550;Note=Hypothetical protein.;Transcript_evidence=tplb0054p19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0249550-00
Chr04	irgsp1_rep	five_prime_UTR	9662876	9662984	.	+	.	Parent=Os04t0249550-00
Chr04	irgsp1_rep	CDS	9662985	9663122	.	+	0	Parent=Os04t0249550-00
Chr04	irgsp1_rep	CDS	9663373	9663668	.	+	0	Parent=Os04t0249550-00
Chr04	irgsp1_rep	CDS	9663813	9663933	.	+	1	Parent=Os04t0249550-00
Chr04	irgsp1_rep	three_prime_UTR	9663934	9664034	.	+	.	Parent=Os04t0249550-00
Chr04	irgsp1_rep	three_prime_UTR	9664152	9664339	.	+	.	Parent=Os04t0249550-00
Chr04	irgsp1_rep	three_prime_UTR	9664441	9664527	.	+	.	Parent=Os04t0249550-00
Chr04	irgsp1_rep	three_prime_UTR	9664621	9664830	.	+	.	Parent=Os04t0249550-00
Chr04	irgsp1_rep	three_prime_UTR	9664973	9665063	.	+	.	Parent=Os04t0249550-00
Chr04	irgsp1_rep	three_prime_UTR	9665186	9665409	.	+	.	Parent=Os04t0249550-00
Chr04	irgsp1_rep	mRNA	9671368	9674023	.	-	.	ID=Os04t0249600-01;Name=Os04t0249600-01;Locus_id=Os04g0249600;CGSNL Gene Symbol=STR6;CGSNL Gene Name=SULFURTRANSFERASE 6;Oryzabase Gene Symbol Synonym(s)=OsStr6%2C OsRhST%2C RLD%2C OsHAC1%3B2%2C HAC1%3B2;Oryzabase Gene Name Synonym(s)=Sulfurtransferase 6%2C rhodanese-related sulfurtransferase%2C rhodanese-like domain-containing protein%2C High As Content 1%3B2;Note=Similar to senescence-associated protein DIN1.;Transcript_evidence=AK069432 (DDBJ%2C Best hit);ORF_evidence=NP_001152690.1 (RefSeq);InterPro=Rhodanese-like (IPR001763);NIAS_FLcDNA=J023019G15;Oryzabase=12056;Expression=AK069432;TENOR=Os04t0249600-01;KEGG=Os04t0249600-01
Chr04	irgsp1_rep	five_prime_UTR	9673775	9674023	.	-	.	Parent=Os04t0249600-01
Chr04	irgsp1_rep	CDS	9673608	9673774	.	-	0	Parent=Os04t0249600-01
Chr04	irgsp1_rep	CDS	9673063	9673137	.	-	1	Parent=Os04t0249600-01
Chr04	irgsp1_rep	CDS	9672814	9672883	.	-	1	Parent=Os04t0249600-01
Chr04	irgsp1_rep	CDS	9672623	9672697	.	-	0	Parent=Os04t0249600-01
Chr04	irgsp1_rep	three_prime_UTR	9671368	9672622	.	-	.	Parent=Os04t0249600-01
Chr04	irgsp1_rep	mRNA	9671368	9673774	.	-	.	ID=Os04t0249600-02;Name=Os04t0249600-02;Locus_id=Os04g0249600;RAP-DB Gene Symbol Synonym(s)=STR6%2C OsHAC1%3B2%2C OsStr6%2C OsRhST%2C RLD;RAP-DB Gene Name Synonym(s)=SULFURTRANSFERASE 6%2C Sulfurtransferase 6%2C rhodanese-related sulfurtransferase%2C rhodanese-like domain-containing protein;CGSNL Gene Symbol=STR6;CGSNL Gene Name=SULFURTRANSFERASE 6;Oryzabase Gene Symbol Synonym(s)=OsStr6%2C OsRhST%2C RLD%2C OsHAC1%3B2%2C HAC1%3B2;Oryzabase Gene Name Synonym(s)=Sulfurtransferase 6%2C rhodanese-related sulfurtransferase%2C rhodanese-like domain-containing protein%2C High As Content 1%3B2;Note=Arsenate reductase%2C Sulfurtransferase/rhodanese-like protein%2C Regulation of arsenic accumulation;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;InterPro=Rhodanese-like domain (IPR001763);NIAS_FLcDNA=002-180-F02 (truncated);Manual Curation=November 7%2C 2016;Literature_PMID=27702843,21821426;Oryzabase=12056;Expression=AK119900;TENOR=Os04t0249600-02;KEGG=Os04t0249600-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	9673608	9673774	.	-	0	Parent=Os04t0249600-02
Chr04	irgsp1_rep	CDS	9673063	9673137	.	-	1	Parent=Os04t0249600-02
Chr04	irgsp1_rep	CDS	9672814	9672883	.	-	1	Parent=Os04t0249600-02
Chr04	irgsp1_rep	CDS	9672644	9672697	.	-	0	Parent=Os04t0249600-02
Chr04	irgsp1_rep	CDS	9671476	9671571	.	-	0	Parent=Os04t0249600-02
Chr04	irgsp1_rep	three_prime_UTR	9671368	9671475	.	-	.	Parent=Os04t0249600-02
Chr04	irgsp1_rep	mRNA	9677438	9678593	.	-	.	ID=Os04t0249700-01;Name=Os04t0249700-01;Locus_id=Os04g0249700;Note=Similar to transposon protein.;Transcript_evidence=AK061137 (DDBJ%2C Best hit);ORF_evidence=NP_001152256.1 (RefSeq);GO=Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=4Fe-4S ferredoxin%2C iron-sulpur binding domain (IPR017896);NIAS_FLcDNA=006-208-B04;Expression=AK061137;TENOR=Os04t0249700-01;KEGG=Os04t0249700-01
Chr04	irgsp1_rep	five_prime_UTR	9678592	9678593	.	-	.	Parent=Os04t0249700-01
Chr04	irgsp1_rep	CDS	9678139	9678591	.	-	0	Parent=Os04t0249700-01
Chr04	irgsp1_rep	three_prime_UTR	9677438	9678138	.	-	.	Parent=Os04t0249700-01
Chr04	irgsp1_rep	mRNA	9684572	9685135	.	+	.	ID=Os04t0249900-01;Name=Os04t0249900-01;Locus_id=Os04g0249900;Note=Hypothetical gene.;Transcript_evidence=AK242453 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J080097F14;TENOR=Os04t0249900-01;KEGG=Os04t0249900-01
Chr04	irgsp1_rep	five_prime_UTR	9684572	9684778	.	+	.	Parent=Os04t0249900-01
Chr04	irgsp1_rep	CDS	9684779	9684991	.	+	0	Parent=Os04t0249900-01
Chr04	irgsp1_rep	three_prime_UTR	9684992	9685135	.	+	.	Parent=Os04t0249900-01
Chr04	irgsp1_rep	mRNA	9686760	9688024	.	-	.	ID=Os04t0250050-00;Name=Os04t0250050-00;Locus_id=Os04g0250050;Note=Conserved hypothetical protein.;Transcript_evidence=AK107263 (DDBJ%2C Secondary hit);ORF_evidence=B8ARM4 (UniProt);TENOR=Os04t0250050-00
Chr04	irgsp1_rep	five_prime_UTR	9687610	9688024	.	-	.	Parent=Os04t0250050-00
Chr04	irgsp1_rep	five_prime_UTR	9687560	9687593	.	-	.	Parent=Os04t0250050-00
Chr04	irgsp1_rep	CDS	9686939	9687559	.	-	0	Parent=Os04t0250050-00
Chr04	irgsp1_rep	three_prime_UTR	9686760	9686938	.	-	.	Parent=Os04t0250050-00
Chr04	irgsp1_rep	mRNA	9687994	9689204	.	+	.	ID=Os04t0250200-01;Name=Os04t0250200-01;Locus_id=Os04g0250200;Note=Conserved hypothetical protein.;Transcript_evidence=AK058584 (DDBJ%2C Best hit);ORF_evidence=B8ARM3 (UniProt);NIAS_FLcDNA=001-017-F12;Expression=AK058584;TENOR=Os04t0250200-01;KEGG=Os04t0250200-01
Chr04	irgsp1_rep	five_prime_UTR	9687994	9688076	.	+	.	Parent=Os04t0250200-01
Chr04	irgsp1_rep	CDS	9688077	9688451	.	+	0	Parent=Os04t0250200-01
Chr04	irgsp1_rep	three_prime_UTR	9688452	9689204	.	+	.	Parent=Os04t0250200-01
Chr04	irgsp1_rep	mRNA	9695111	9703565	.	+	.	ID=Os04t0250700-01;Name=Os04t0250700-01;Locus_id=Os04g0250700;Note=Uncharacterised protein family UPF0307 domain containing protein.;Transcript_evidence=AK066975 (DDBJ%2C Best hit);ORF_evidence=Q01KW7 (UniProt);InterPro=Ribosome-associated%2C YjgA (IPR006839),PSPTO4464-like domain (IPR023153);NIAS_FLcDNA=J013090L20;Expression=AK066975;TENOR=Os04t0250700-01;KEGG=Os04t0250700-01
Chr04	irgsp1_rep	five_prime_UTR	9695111	9695132	.	+	.	Parent=Os04t0250700-01
Chr04	irgsp1_rep	CDS	9695133	9695440	.	+	0	Parent=Os04t0250700-01
Chr04	irgsp1_rep	CDS	9695526	9695574	.	+	1	Parent=Os04t0250700-01
Chr04	irgsp1_rep	CDS	9695677	9695728	.	+	0	Parent=Os04t0250700-01
Chr04	irgsp1_rep	CDS	9700853	9701007	.	+	2	Parent=Os04t0250700-01
Chr04	irgsp1_rep	CDS	9702328	9702441	.	+	0	Parent=Os04t0250700-01
Chr04	irgsp1_rep	CDS	9703215	9703367	.	+	0	Parent=Os04t0250700-01
Chr04	irgsp1_rep	three_prime_UTR	9703368	9703565	.	+	.	Parent=Os04t0250700-01
Chr04	irgsp1_rep	mRNA	9716005	9717691	.	-	.	ID=Os04t0251825-00;Name=Os04t0251825-00;Locus_id=Os04g0251825;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os04t0251825-00;KEGG=Os04t0251825-00
Chr04	irgsp1_rep	CDS	9717634	9717691	.	-	0	Parent=Os04t0251825-00
Chr04	irgsp1_rep	CDS	9716735	9716816	.	-	2	Parent=Os04t0251825-00
Chr04	irgsp1_rep	CDS	9716005	9716188	.	-	1	Parent=Os04t0251825-00
Chr04	irgsp1_rep	mRNA	9904121	9916256	.	-	.	ID=Os04t0252200-01;Name=Os04t0252200-01;Locus_id=Os04g0252200;Note=Similar to CPSF160%3B nucleic acid binding.;Transcript_evidence=AK072371 (DDBJ%2C Best hit);ORF_evidence=NP_199979.2 (RefSeq);NIAS_FLcDNA=J023064M18;TENOR=Os04t0252200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	9916142	9916256	.	-	.	Parent=Os04t0252200-01
Chr04	irgsp1_rep	CDS	9915795	9916141	.	-	0	Parent=Os04t0252200-01
Chr04	irgsp1_rep	CDS	9915544	9915681	.	-	1	Parent=Os04t0252200-01
Chr04	irgsp1_rep	CDS	9914412	9914565	.	-	1	Parent=Os04t0252200-01
Chr04	irgsp1_rep	CDS	9913002	9913088	.	-	0	Parent=Os04t0252200-01
Chr04	irgsp1_rep	three_prime_UTR	9912943	9913001	.	-	.	Parent=Os04t0252200-01
Chr04	irgsp1_rep	three_prime_UTR	9912343	9912438	.	-	.	Parent=Os04t0252200-01
Chr04	irgsp1_rep	three_prime_UTR	9912195	9912247	.	-	.	Parent=Os04t0252200-01
Chr04	irgsp1_rep	three_prime_UTR	9911286	9911417	.	-	.	Parent=Os04t0252200-01
Chr04	irgsp1_rep	three_prime_UTR	9911146	9911197	.	-	.	Parent=Os04t0252200-01
Chr04	irgsp1_rep	three_prime_UTR	9910943	9911059	.	-	.	Parent=Os04t0252200-01
Chr04	irgsp1_rep	three_prime_UTR	9908141	9908906	.	-	.	Parent=Os04t0252200-01
Chr04	irgsp1_rep	three_prime_UTR	9906712	9906789	.	-	.	Parent=Os04t0252200-01
Chr04	irgsp1_rep	three_prime_UTR	9904121	9905980	.	-	.	Parent=Os04t0252200-01
Chr04	irgsp1_rep	mRNA	9888904	9915608	.	-	.	ID=Os04t0252200-02;Name=Os04t0252200-02;Locus_id=Os04g0252200;Note=Similar to CPSF160%3B nucleic acid binding.;Transcript_evidence=AK120441 (DDBJ%2C Best hit);ORF_evidence=NP_199979.2 (RefSeq);NIAS_FLcDNA=J013098I11;TENOR=Os04t0252200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	9915544	9915608	.	-	0	Parent=Os04t0252200-02
Chr04	irgsp1_rep	CDS	9914412	9914565	.	-	1	Parent=Os04t0252200-02
Chr04	irgsp1_rep	CDS	9914021	9914156	.	-	0	Parent=Os04t0252200-02
Chr04	irgsp1_rep	CDS	9913252	9913271	.	-	2	Parent=Os04t0252200-02
Chr04	irgsp1_rep	three_prime_UTR	9913215	9913251	.	-	.	Parent=Os04t0252200-02
Chr04	irgsp1_rep	three_prime_UTR	9912943	9913088	.	-	.	Parent=Os04t0252200-02
Chr04	irgsp1_rep	three_prime_UTR	9912343	9912438	.	-	.	Parent=Os04t0252200-02
Chr04	irgsp1_rep	three_prime_UTR	9912195	9912247	.	-	.	Parent=Os04t0252200-02
Chr04	irgsp1_rep	three_prime_UTR	9911286	9911417	.	-	.	Parent=Os04t0252200-02
Chr04	irgsp1_rep	three_prime_UTR	9911146	9911197	.	-	.	Parent=Os04t0252200-02
Chr04	irgsp1_rep	three_prime_UTR	9910943	9911059	.	-	.	Parent=Os04t0252200-02
Chr04	irgsp1_rep	three_prime_UTR	9908592	9908906	.	-	.	Parent=Os04t0252200-02
Chr04	irgsp1_rep	three_prime_UTR	9908141	9908263	.	-	.	Parent=Os04t0252200-02
Chr04	irgsp1_rep	three_prime_UTR	9906712	9906789	.	-	.	Parent=Os04t0252200-02
Chr04	irgsp1_rep	three_prime_UTR	9905861	9905980	.	-	.	Parent=Os04t0252200-02
Chr04	irgsp1_rep	three_prime_UTR	9904250	9904344	.	-	.	Parent=Os04t0252200-02
Chr04	irgsp1_rep	three_prime_UTR	9902988	9903181	.	-	.	Parent=Os04t0252200-02
Chr04	irgsp1_rep	three_prime_UTR	9901675	9902447	.	-	.	Parent=Os04t0252200-02
Chr04	irgsp1_rep	three_prime_UTR	9901462	9901542	.	-	.	Parent=Os04t0252200-02
Chr04	irgsp1_rep	three_prime_UTR	9901317	9901382	.	-	.	Parent=Os04t0252200-02
Chr04	irgsp1_rep	three_prime_UTR	9900182	9900259	.	-	.	Parent=Os04t0252200-02
Chr04	irgsp1_rep	three_prime_UTR	9899309	9899535	.	-	.	Parent=Os04t0252200-02
Chr04	irgsp1_rep	three_prime_UTR	9898814	9898942	.	-	.	Parent=Os04t0252200-02
Chr04	irgsp1_rep	three_prime_UTR	9898548	9898721	.	-	.	Parent=Os04t0252200-02
Chr04	irgsp1_rep	three_prime_UTR	9893940	9894125	.	-	.	Parent=Os04t0252200-02
Chr04	irgsp1_rep	three_prime_UTR	9890530	9890897	.	-	.	Parent=Os04t0252200-02
Chr04	irgsp1_rep	three_prime_UTR	9888904	9889561	.	-	.	Parent=Os04t0252200-02
Chr04	irgsp1_rep	mRNA	9938870	9956327	.	-	.	ID=Os04t0252400-01;Name=Os04t0252400-01;Locus_id=Os04g0252400;Note=Similar to SNARE-interacting protein KEULE.;Transcript_evidence=AK119369 (DDBJ%2C Best hit);ORF_evidence=NP_001151607.1 (RefSeq);GO=Biological Process: vesicle docking involved in exocytosis (GO:0006904),Biological Process: vesicle-mediated transport (GO:0016192);InterPro=Sec1-like protein (IPR001619);NIAS_FLcDNA=001-131-H07;TENOR=Os04t0252400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	9955946	9956327	.	-	.	Parent=Os04t0252400-01
Chr04	irgsp1_rep	CDS	9955873	9955945	.	-	0	Parent=Os04t0252400-01
Chr04	irgsp1_rep	CDS	9954116	9954171	.	-	2	Parent=Os04t0252400-01
Chr04	irgsp1_rep	CDS	9953920	9954001	.	-	0	Parent=Os04t0252400-01
Chr04	irgsp1_rep	CDS	9952739	9952817	.	-	2	Parent=Os04t0252400-01
Chr04	irgsp1_rep	CDS	9952306	9952411	.	-	1	Parent=Os04t0252400-01
Chr04	irgsp1_rep	three_prime_UTR	9951718	9952305	.	-	.	Parent=Os04t0252400-01
Chr04	irgsp1_rep	three_prime_UTR	9951589	9951621	.	-	.	Parent=Os04t0252400-01
Chr04	irgsp1_rep	three_prime_UTR	9951303	9951431	.	-	.	Parent=Os04t0252400-01
Chr04	irgsp1_rep	three_prime_UTR	9950188	9950379	.	-	.	Parent=Os04t0252400-01
Chr04	irgsp1_rep	three_prime_UTR	9949967	9950050	.	-	.	Parent=Os04t0252400-01
Chr04	irgsp1_rep	three_prime_UTR	9949780	9949878	.	-	.	Parent=Os04t0252400-01
Chr04	irgsp1_rep	three_prime_UTR	9949634	9949707	.	-	.	Parent=Os04t0252400-01
Chr04	irgsp1_rep	three_prime_UTR	9948061	9948157	.	-	.	Parent=Os04t0252400-01
Chr04	irgsp1_rep	three_prime_UTR	9947720	9947845	.	-	.	Parent=Os04t0252400-01
Chr04	irgsp1_rep	three_prime_UTR	9947545	9947640	.	-	.	Parent=Os04t0252400-01
Chr04	irgsp1_rep	three_prime_UTR	9945724	9945840	.	-	.	Parent=Os04t0252400-01
Chr04	irgsp1_rep	three_prime_UTR	9945552	9945629	.	-	.	Parent=Os04t0252400-01
Chr04	irgsp1_rep	three_prime_UTR	9941058	9941257	.	-	.	Parent=Os04t0252400-01
Chr04	irgsp1_rep	three_prime_UTR	9940220	9940310	.	-	.	Parent=Os04t0252400-01
Chr04	irgsp1_rep	three_prime_UTR	9939097	9940083	.	-	.	Parent=Os04t0252400-01
Chr04	irgsp1_rep	three_prime_UTR	9938870	9939004	.	-	.	Parent=Os04t0252400-01
Chr04	irgsp1_rep	mRNA	9939995	9955972	.	+	.	ID=Os04t0252550-00;Name=Os04t0252550-00;Locus_id=Os04g0252550;Note=Non-protein coding transcript.;Transcript_evidence=tplb0032b21 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os04t0252550-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	exon	9939995	9940085	.	+	.	Parent=Os04t0252550-00
Chr04	irgsp1_rep	exon	9940225	9940299	.	+	.	Parent=Os04t0252550-00
Chr04	irgsp1_rep	exon	9941049	9941241	.	+	.	Parent=Os04t0252550-00
Chr04	irgsp1_rep	exon	9945533	9945638	.	+	.	Parent=Os04t0252550-00
Chr04	irgsp1_rep	exon	9945733	9945837	.	+	.	Parent=Os04t0252550-00
Chr04	irgsp1_rep	exon	9947542	9947638	.	+	.	Parent=Os04t0252550-00
Chr04	irgsp1_rep	exon	9947718	9947822	.	+	.	Parent=Os04t0252550-00
Chr04	irgsp1_rep	exon	9948040	9948157	.	+	.	Parent=Os04t0252550-00
Chr04	irgsp1_rep	exon	9949634	9949706	.	+	.	Parent=Os04t0252550-00
Chr04	irgsp1_rep	exon	9949779	9949845	.	+	.	Parent=Os04t0252550-00
Chr04	irgsp1_rep	exon	9949936	9950032	.	+	.	Parent=Os04t0252550-00
Chr04	irgsp1_rep	exon	9950168	9950361	.	+	.	Parent=Os04t0252550-00
Chr04	irgsp1_rep	exon	9951282	9951433	.	+	.	Parent=Os04t0252550-00
Chr04	irgsp1_rep	exon	9951685	9951835	.	+	.	Parent=Os04t0252550-00
Chr04	irgsp1_rep	exon	9952715	9952800	.	+	.	Parent=Os04t0252550-00
Chr04	irgsp1_rep	exon	9953903	9954027	.	+	.	Parent=Os04t0252550-00
Chr04	irgsp1_rep	exon	9955845	9955972	.	+	.	Parent=Os04t0252550-00
Chr04	irgsp1_rep	mRNA	9958530	9959022	.	+	.	ID=Os04t0252662-00;Name=Os04t0252662-00;Locus_id=Os04g0252662;Note=Non-protein coding transcript.;Transcript_evidence=BT016513 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0252662-00
Chr04	irgsp1_rep	exon	9958530	9959022	.	+	.	Parent=Os04t0252662-00
Chr04	irgsp1_rep	mRNA	9993479	9994278	.	-	.	ID=Os04t0252850-00;Name=Os04t0252850-00;Locus_id=Os04g0252850;Note=Hypothetical gene.;Transcript_evidence=EU961904 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0252850-00
Chr04	irgsp1_rep	five_prime_UTR	9994277	9994278	.	-	.	Parent=Os04t0252850-00
Chr04	irgsp1_rep	CDS	9993810	9994276	.	-	0	Parent=Os04t0252850-00
Chr04	irgsp1_rep	CDS	9993479	9993696	.	-	1	Parent=Os04t0252850-00
Chr04	irgsp1_rep	mRNA	9993501	9994503	.	+	.	ID=Os04t0253000-01;Name=Os04t0253000-01;Locus_id=Os04g0253000;Oryzabase Gene Symbol Synonym(s)=H1%2C OsH1;Oryzabase Gene Name Synonym(s)=G1/S-phase gene H1;Note=Similar to Histone H1.;Transcript_evidence=AK073668 (DDBJ%2C Best hit);ORF_evidence=Q01M78 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H1/H5 (IPR005818),Histone H5 (IPR005819),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=J033052L06;Oryzabase=19086;Expression=AK073668;TENOR=Os04t0253000-01;KEGG=Os04t0253000-01
Chr04	irgsp1_rep	five_prime_UTR	9993501	9993581	.	+	.	Parent=Os04t0253000-01
Chr04	irgsp1_rep	CDS	9993582	9993698	.	+	0	Parent=Os04t0253000-01
Chr04	irgsp1_rep	CDS	9993812	9994270	.	+	0	Parent=Os04t0253000-01
Chr04	irgsp1_rep	three_prime_UTR	9994271	9994503	.	+	.	Parent=Os04t0253000-01
Chr04	irgsp1_rep	mRNA	10019877	10023628	.	+	.	ID=Os04t0253601-01;Name=Os04t0253601-01;Locus_id=Os04g0253601;Note=Conserved hypothetical protein.;Transcript_evidence=AK288728 (DDBJ%2C Best hit);ORF_evidence=Q10RE3 (UniProt);NIAS_FLcDNA=J090063F03;TENOR=Os04t0253601-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	10019877	10022683	.	+	.	Parent=Os04t0253601-01
Chr04	irgsp1_rep	CDS	10022684	10022875	.	+	0	Parent=Os04t0253601-01
Chr04	irgsp1_rep	three_prime_UTR	10022876	10023628	.	+	.	Parent=Os04t0253601-01
Chr04	irgsp1_rep	mRNA	10061764	10065209	.	+	.	ID=Os04t0254000-01;Name=Os04t0254000-01;Locus_id=Os04g0254000;Oryzabase Gene Name Synonym(s)=Dihydrodipicolinate synthase;Note=Similar to Dihydrodipicolinate synthase 1%2C chloroplast precursor (EC 4.2.1.52) (DHDPS 1).;Transcript_evidence=AK071042 (DDBJ%2C Best hit);ORF_evidence=Q01HC8 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: lysine biosynthetic process via diaminopimelate (GO:0009089),Molecular Function: catalytic activity (GO:0003824),Molecular Function: dihydrodipicolinate synthase activity (GO:0008840),Molecular Function: lyase activity (GO:0016829);InterPro=Dihydrodipicolinate synthetase-like (IPR002220),Dihydrodipicolinate synthase%2C DapA (IPR005263),Aldolase-type TIM barrel (IPR013785),Dihydrodipicolinate synthetase%2C conserved site (IPR020624),Dihydrodipicolinate synthetase%2C active site (IPR020625);NIAS_FLcDNA=J023080C02;Oryzabase=16692;Expression=AK071042;TENOR=Os04t0254000-01;KEGG=Os04t0254000-01 (EC:4.2.1.52)
Chr04	irgsp1_rep	five_prime_UTR	10061764	10061929	.	+	.	Parent=Os04t0254000-01
Chr04	irgsp1_rep	CDS	10061930	10062063	.	+	0	Parent=Os04t0254000-01
Chr04	irgsp1_rep	CDS	10063280	10063360	.	+	1	Parent=Os04t0254000-01
Chr04	irgsp1_rep	CDS	10063966	10064893	.	+	1	Parent=Os04t0254000-01
Chr04	irgsp1_rep	three_prime_UTR	10064894	10065209	.	+	.	Parent=Os04t0254000-01
Chr04	irgsp1_rep	mRNA	10068617	10075564	.	+	.	ID=Os04t0254300-01;Name=Os04t0254300-01;Locus_id=Os04g0254300;Note=Conserved hypothetical protein.;Transcript_evidence=AK120624 (DDBJ%2C Best hit);ORF_evidence=Q7G1S1 (UniProt);NIAS_FLcDNA=J013152L22;TENOR=Os04t0254300-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	10068617	10069166	.	+	.	Parent=Os04t0254300-01
Chr04	irgsp1_rep	five_prime_UTR	10069517	10072276	.	+	.	Parent=Os04t0254300-01
Chr04	irgsp1_rep	CDS	10072277	10072414	.	+	0	Parent=Os04t0254300-01
Chr04	irgsp1_rep	three_prime_UTR	10072415	10075564	.	+	.	Parent=Os04t0254300-01
Chr04	irgsp1_rep	mRNA	10147177	10151418	.	-	.	ID=Os04t0255525-01;Name=Os04t0255525-01;Locus_id=Os04g0255525;Note=Hypothetical gene.;Transcript_evidence=AK242256 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J075183D10;TENOR=Os04t0255525-01;KEGG=Os04t0255525-01
Chr04	irgsp1_rep	five_prime_UTR	10150964	10151418	.	-	.	Parent=Os04t0255525-01
Chr04	irgsp1_rep	CDS	10150631	10150963	.	-	0	Parent=Os04t0255525-01
Chr04	irgsp1_rep	three_prime_UTR	10149997	10150630	.	-	.	Parent=Os04t0255525-01
Chr04	irgsp1_rep	three_prime_UTR	10147177	10148170	.	-	.	Parent=Os04t0255525-01
Chr04	irgsp1_rep	mRNA	10147184	10150653	.	+	.	ID=Os04t0255600-00;Name=Os04t0255600-00;Locus_id=Os04g0255600;Note=CytoChrome P450 domain containing protein.;Transcript_evidence=BT064329 (DDBJ);ORF_evidence=Q7XQ53 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os04t0255600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	10147184	10148170	.	+	0	Parent=Os04t0255600-00
Chr04	irgsp1_rep	CDS	10150009	10150653	.	+	0	Parent=Os04t0255600-00
Chr04	irgsp1_rep	mRNA	10316737	10317614	.	-	.	ID=Os04t0257500-01;Name=Os04t0257500-01;Locus_id=Os04g0257500;CGSNL Gene Symbol=ERF128;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 128;Oryzabase Gene Symbol Synonym(s)=OsERF#128%2C OsERF128%2C AP2/EREBP#034%2C AP2/EREBP34;Oryzabase Gene Name Synonym(s)=ethylene response factor 128%2C APETALA2/ethylene-responsive element binding protein 34;Note=Similar to Transcription factor TSRF1.;Transcript_evidence=AK107745 (DDBJ%2C Best hit);ORF_evidence=Q7XDZ2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=002-132-H03;Oryzabase=10621;Expression=AK107745;TENOR=Os04t0257500-01;KEGG=Os04t0257500-01
Chr04	irgsp1_rep	five_prime_UTR	10317404	10317614	.	-	.	Parent=Os04t0257500-01
Chr04	irgsp1_rep	CDS	10317017	10317403	.	-	0	Parent=Os04t0257500-01
Chr04	irgsp1_rep	three_prime_UTR	10316737	10317016	.	-	.	Parent=Os04t0257500-01
Chr04	irgsp1_rep	mRNA	10452266	10453725	.	-	.	ID=Os04t0258900-01;Name=Os04t0258900-01;Locus_id=Os04g0258900;Oryzabase Gene Symbol Synonym(s)=OsFbox192%2C Os_F0688;Oryzabase Gene Name Synonym(s)=F-box protein 192;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK062983 (DDBJ%2C Best hit);ORF_evidence=Q01MH5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=001-109-F06;Oryzabase=16981;Expression=AK062983;TENOR=Os04t0258900-01;KEGG=Os04t0258900-01
Chr04	irgsp1_rep	five_prime_UTR	10453658	10453725	.	-	.	Parent=Os04t0258900-01
Chr04	irgsp1_rep	CDS	10452431	10453657	.	-	0	Parent=Os04t0258900-01
Chr04	irgsp1_rep	three_prime_UTR	10452266	10452430	.	-	.	Parent=Os04t0258900-01
Chr04	irgsp1_rep	mRNA	10458951	10460024	.	-	.	ID=Os04t0259100-00;Name=Os04t0259100-00;Locus_id=Os04g0259100;Note=Acyl-CoA N-acyltransferase domain containing protein.;Transcript_evidence=AK368794 (DDBJ);ORF_evidence=Q7X7Y7 (UniProt);InterPro=Acyl-CoA N-acyltransferase (IPR016181);TENOR=Os04t0259100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	10458951	10460024	.	-	0	Parent=Os04t0259100-00
Chr04	irgsp1_rep	mRNA	10468651	10469320	.	+	.	ID=Os04t0259150-00;Name=Os04t0259150-00;Locus_id=Os04g0259150;Note=Conserved hypothetical protein.;Transcript_evidence=CU861794 (DDBJ%2C Secondary hit);ORF_evidence=NP_001173816.1 (RefSeq);TENOR=Os04t0259150-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	10468651	10468732	.	+	.	Parent=Os04t0259150-00
Chr04	irgsp1_rep	five_prime_UTR	10468739	10468775	.	+	.	Parent=Os04t0259150-00
Chr04	irgsp1_rep	CDS	10468776	10468804	.	+	0	Parent=Os04t0259150-00
Chr04	irgsp1_rep	CDS	10469014	10469166	.	+	1	Parent=Os04t0259150-00
Chr04	irgsp1_rep	CDS	10469271	10469307	.	+	1	Parent=Os04t0259150-00
Chr04	irgsp1_rep	three_prime_UTR	10469308	10469320	.	+	.	Parent=Os04t0259150-00
Chr04	irgsp1_rep	mRNA	10470563	10472410	.	-	.	ID=Os04t0259200-01;Name=Os04t0259200-01;Locus_id=Os04g0259200;Note=Conserved hypothetical protein.;Transcript_evidence=AK119366 (DDBJ%2C Best hit);ORF_evidence=B8B6C2 (UniProt);NIAS_FLcDNA=001-131-H04;Expression=AK119366;TENOR=Os04t0259200-01;KEGG=Os04t0259200-01
Chr04	irgsp1_rep	five_prime_UTR	10472322	10472410	.	-	.	Parent=Os04t0259200-01
Chr04	irgsp1_rep	CDS	10472058	10472321	.	-	0	Parent=Os04t0259200-01
Chr04	irgsp1_rep	three_prime_UTR	10470563	10472057	.	-	.	Parent=Os04t0259200-01
Chr04	irgsp1_rep	mRNA	10624933	10627828	.	+	.	ID=Os04t0261400-01;Name=Os04t0261400-01;Locus_id=Os04g0261400;Note=CytoChrome c region domain containing protein.;Transcript_evidence=AK109843 (DDBJ%2C Best hit);ORF_evidence=Q01MG9 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Ribonuclease H-like (IPR012337);NIAS_FLcDNA=002-148-E03;Expression=AK109843;TENOR=Os04t0261400-01;KEGG=Os04t0261400-01
Chr04	irgsp1_rep	five_prime_UTR	10624933	10625205	.	+	.	Parent=Os04t0261400-01
Chr04	irgsp1_rep	CDS	10625206	10627518	.	+	0	Parent=Os04t0261400-01
Chr04	irgsp1_rep	three_prime_UTR	10627519	10627828	.	+	.	Parent=Os04t0261400-01
Chr04	irgsp1_rep	mRNA	10987280	10995862	.	-	.	ID=Os04t0266400-01;Name=Os04t0266400-01;Locus_id=Os04g0266400;Note=Similar to AHM2 (Fragment).;Transcript_evidence=AK068202 (DDBJ%2C Best hit);ORF_evidence=B7EB50 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Methyl-CpG DNA binding (IPR001739),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J013136L18;Expression=AK068202;TENOR=Os04t0266400-01;KEGG=Os04t0266400-01
Chr04	irgsp1_rep	five_prime_UTR	10995780	10995862	.	-	.	Parent=Os04t0266400-01
Chr04	irgsp1_rep	CDS	10995640	10995779	.	-	0	Parent=Os04t0266400-01
Chr04	irgsp1_rep	CDS	10994323	10994545	.	-	1	Parent=Os04t0266400-01
Chr04	irgsp1_rep	CDS	10994081	10994206	.	-	0	Parent=Os04t0266400-01
Chr04	irgsp1_rep	CDS	10993919	10993996	.	-	0	Parent=Os04t0266400-01
Chr04	irgsp1_rep	CDS	10992385	10992510	.	-	0	Parent=Os04t0266400-01
Chr04	irgsp1_rep	CDS	10992206	10992304	.	-	0	Parent=Os04t0266400-01
Chr04	irgsp1_rep	CDS	10991972	10992105	.	-	0	Parent=Os04t0266400-01
Chr04	irgsp1_rep	CDS	10991079	10991094	.	-	1	Parent=Os04t0266400-01
Chr04	irgsp1_rep	three_prime_UTR	10990986	10991078	.	-	.	Parent=Os04t0266400-01
Chr04	irgsp1_rep	three_prime_UTR	10987280	10988252	.	-	.	Parent=Os04t0266400-01
Chr04	irgsp1_rep	mRNA	10984408	10995862	.	-	.	ID=Os04t0266400-02;Name=Os04t0266400-02;Locus_id=Os04g0266400;Note=Similar to cDNA clone:001-201-C01%2C full insert sequence.;Transcript_evidence=AK065632 (DDBJ%2C Best hit),AK072046 (DDBJ%2C Best hit),AK105688 (DDBJ%2C Best hit);ORF_evidence=Q01LW2 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Methyl-CpG DNA binding (IPR001739),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J013028E03,J013109D16,001-201-C01;TENOR=Os04t0266400-02
Chr04	irgsp1_rep	five_prime_UTR	10995780	10995862	.	-	.	Parent=Os04t0266400-02
Chr04	irgsp1_rep	CDS	10995640	10995779	.	-	0	Parent=Os04t0266400-02
Chr04	irgsp1_rep	CDS	10994323	10994545	.	-	1	Parent=Os04t0266400-02
Chr04	irgsp1_rep	CDS	10994081	10994206	.	-	0	Parent=Os04t0266400-02
Chr04	irgsp1_rep	CDS	10993919	10993996	.	-	0	Parent=Os04t0266400-02
Chr04	irgsp1_rep	CDS	10992385	10992510	.	-	0	Parent=Os04t0266400-02
Chr04	irgsp1_rep	CDS	10992206	10992304	.	-	0	Parent=Os04t0266400-02
Chr04	irgsp1_rep	CDS	10991959	10992105	.	-	0	Parent=Os04t0266400-02
Chr04	irgsp1_rep	CDS	10990986	10991094	.	-	0	Parent=Os04t0266400-02
Chr04	irgsp1_rep	CDS	10988052	10988252	.	-	2	Parent=Os04t0266400-02
Chr04	irgsp1_rep	CDS	10984639	10985096	.	-	2	Parent=Os04t0266400-02
Chr04	irgsp1_rep	three_prime_UTR	10984408	10984638	.	-	.	Parent=Os04t0266400-02
Chr04	irgsp1_rep	mRNA	10996728	11005544	.	-	.	ID=Os04t0266700-00;Name=Os04t0266700-00;Locus_id=Os04g0266700;Note=Hypothetical conserved gene.;Transcript_evidence=BT086277 (DDBJ);ORF_evidence=B8BAE9 (UniProt);TENOR=Os04t0266700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	11005417	11005544	.	-	.	Parent=Os04t0266700-00
Chr04	irgsp1_rep	five_prime_UTR	10997246	10997283	.	-	.	Parent=Os04t0266700-00
Chr04	irgsp1_rep	CDS	10996901	10997245	.	-	0	Parent=Os04t0266700-00
Chr04	irgsp1_rep	three_prime_UTR	10996728	10996900	.	-	.	Parent=Os04t0266700-00
Chr04	irgsp1_rep	mRNA	11026653	11032673	.	+	.	ID=Os04t0266900-01;Name=Os04t0266900-01;Locus_id=Os04g0266900;Note=Transketolase C-terminal-like domain containing protein.;Transcript_evidence=AK069447 (DDBJ%2C Best hit);ORF_evidence=Q01LW1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transketolase activity (GO:0004802);InterPro=Transketolase%2C N-terminal (IPR005474),Transketolase-like%2C pyrimidine-binding domain (IPR005475),Transketolase%2C C-terminal (IPR005476),Transketolase%2C bacterial-like (IPR005478),Transketolase%2C C-terminal/Pyruvate-ferredoxin oxidoreductase%2C domain II (IPR009014),Transketolase-like%2C C-terminal (IPR015941);NIAS_FLcDNA=J023019B19;Expression=AK069447;TENOR=Os04t0266900-01;KEGG=Os04t0266900-01 (EC:2.2.1.1)
Chr04	irgsp1_rep	five_prime_UTR	11026653	11026712	.	+	.	Parent=Os04t0266900-01
Chr04	irgsp1_rep	CDS	11026713	11027117	.	+	0	Parent=Os04t0266900-01
Chr04	irgsp1_rep	CDS	11028847	11028937	.	+	0	Parent=Os04t0266900-01
Chr04	irgsp1_rep	CDS	11029035	11029140	.	+	2	Parent=Os04t0266900-01
Chr04	irgsp1_rep	CDS	11029222	11029504	.	+	1	Parent=Os04t0266900-01
Chr04	irgsp1_rep	CDS	11029590	11029738	.	+	0	Parent=Os04t0266900-01
Chr04	irgsp1_rep	CDS	11031110	11031263	.	+	1	Parent=Os04t0266900-01
Chr04	irgsp1_rep	CDS	11031365	11032321	.	+	0	Parent=Os04t0266900-01
Chr04	irgsp1_rep	three_prime_UTR	11032322	11032673	.	+	.	Parent=Os04t0266900-01
Chr04	irgsp1_rep	mRNA	11054917	11055559	.	-	.	ID=Os04t0267250-01;Name=Os04t0267250-01;Locus_id=Os04g0267250;Note=Hypothetical gene.;Transcript_evidence=AK288346 (DDBJ%2C Best hit);ORF_evidence=Q6H4H3 (UniProt);NIAS_FLcDNA=J090023M06;TENOR=Os04t0267250-01;KEGG=Os04t0267250-01
Chr04	irgsp1_rep	five_prime_UTR	11055536	11055559	.	-	.	Parent=Os04t0267250-01
Chr04	irgsp1_rep	CDS	11055158	11055535	.	-	0	Parent=Os04t0267250-01
Chr04	irgsp1_rep	three_prime_UTR	11054917	11055157	.	-	.	Parent=Os04t0267250-01
Chr04	irgsp1_rep	mRNA	11060393	11062063	.	-	.	ID=Os04t0267600-01;Name=Os04t0267600-01;Locus_id=Os04g0267600;Oryzabase Gene Symbol Synonym(s)=OsFbox194%2C Os_F0635;Oryzabase Gene Name Synonym(s)=F-box protein 194;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK071614 (DDBJ%2C Best hit);ORF_evidence=Q01LV5 (UniProt);InterPro=Leucine-rich repeat 2 (IPR013101),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023106E05;Oryzabase=16983;Expression=AK071614;TENOR=Os04t0267600-01;KEGG=Os04t0267600-01
Chr04	irgsp1_rep	five_prime_UTR	11062031	11062063	.	-	.	Parent=Os04t0267600-01
Chr04	irgsp1_rep	CDS	11060807	11062030	.	-	0	Parent=Os04t0267600-01
Chr04	irgsp1_rep	three_prime_UTR	11060393	11060806	.	-	.	Parent=Os04t0267600-01
Chr04	irgsp1_rep	mRNA	11076399	11077043	.	-	.	ID=Os04t0267950-00;Name=Os04t0267950-00;Locus_id=Os04g0267950;Note=Conserved hypothetical protein.;Transcript_evidence=AK355731 (DDBJ);ORF_evidence=NP_001172891.1 (RefSeq);TENOR=Os04t0267950-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	11076935	11077043	.	-	.	Parent=Os04t0267950-00
Chr04	irgsp1_rep	CDS	11076801	11076934	.	-	0	Parent=Os04t0267950-00
Chr04	irgsp1_rep	CDS	11076515	11076698	.	-	1	Parent=Os04t0267950-00
Chr04	irgsp1_rep	three_prime_UTR	11076399	11076514	.	-	.	Parent=Os04t0267950-00
Chr04	irgsp1_rep	mRNA	11081483	11085362	.	+	.	ID=Os04t0268300-01;Name=Os04t0268300-01;Locus_id=Os04g0268300;Note=Hypothetical conserved gene.;Transcript_evidence=AK241853 (DDBJ%2C Best hit);ORF_evidence=NP_001173819.1 (RefSeq);NIAS_FLcDNA=J065215J06;TENOR=Os04t0268300-01;KEGG=Os04t0268300-01
Chr04	irgsp1_rep	five_prime_UTR	11081483	11082207	.	+	.	Parent=Os04t0268300-01
Chr04	irgsp1_rep	CDS	11082208	11082558	.	+	0	Parent=Os04t0268300-01
Chr04	irgsp1_rep	three_prime_UTR	11082559	11082946	.	+	.	Parent=Os04t0268300-01
Chr04	irgsp1_rep	three_prime_UTR	11083910	11084513	.	+	.	Parent=Os04t0268300-01
Chr04	irgsp1_rep	three_prime_UTR	11084856	11085362	.	+	.	Parent=Os04t0268300-01
Chr04	irgsp1_rep	mRNA	11130544	11131484	.	+	.	ID=Os04t0268700-01;Name=Os04t0268700-01;Locus_id=Os04g0268700;Note=Eggshell protein family protein.;Transcript_evidence=AK111277 (DDBJ%2C Best hit);ORF_evidence=Q01LV2 (UniProt);NIAS_FLcDNA=002-180-G09;Expression=AK111277;TENOR=Os04t0268700-01;KEGG=Os04t0268700-01
Chr04	irgsp1_rep	five_prime_UTR	11130544	11130566	.	+	.	Parent=Os04t0268700-01
Chr04	irgsp1_rep	CDS	11130567	11131280	.	+	0	Parent=Os04t0268700-01
Chr04	irgsp1_rep	three_prime_UTR	11131281	11131484	.	+	.	Parent=Os04t0268700-01
Chr04	irgsp1_rep	mRNA	11180119	11183765	.	+	.	ID=Os04t0269100-00;Name=Os04t0269100-00;Locus_id=Os04g0269100;Note=Similar to OSIGBa0135A16.7 protein.;Transcript_evidence=BT035914 (DDBJ);ORF_evidence=Q01LV1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);TENOR=Os04t0269100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	11180119	11180417	.	+	0	Parent=Os04t0269100-00
Chr04	irgsp1_rep	CDS	11180945	11181152	.	+	1	Parent=Os04t0269100-00
Chr04	irgsp1_rep	CDS	11181435	11181657	.	+	0	Parent=Os04t0269100-00
Chr04	irgsp1_rep	CDS	11183650	11183684	.	+	2	Parent=Os04t0269100-00
Chr04	irgsp1_rep	three_prime_UTR	11183685	11183765	.	+	.	Parent=Os04t0269100-00
Chr04	irgsp1_rep	mRNA	11236469	11243987	.	+	.	ID=Os04t0269600-01;Name=Os04t0269600-01;Locus_id=Os04g0269600;CGSNL Gene Symbol=DAO2;CGSNL Gene Name=DIAMINE OXIDASE 2;Oryzabase Gene Symbol Synonym(s)=OsDAO2%2C OsCuDAO2%2C CuDAO2;Oryzabase Gene Name Synonym(s)=diamine oxidase 2%2C Copper-containing diamine oxidase 2;Note=Similar to Primary amine oxidase.;Transcript_evidence=AK100640 (DDBJ%2C Best hit),AK060758 (DDBJ%2C Best hit);ORF_evidence=B9RBR2 (UniProt);GO=Biological Process: amine metabolic process (GO:0009308),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: copper ion binding (GO:0005507),Molecular Function: primary amine oxidase activity (GO:0008131),Molecular Function: quinone binding (GO:0048038);InterPro=Copper amine oxidase (IPR000269),Copper amine oxidase%2C N2-terminal (IPR015800),Copper amine oxidase%2C N2/N3-terminal (IPR015801),Copper amine oxidase%2C N3-terminal (IPR015802),Copper amine oxidase%2C N-terminal (IPR016182);NIAS_FLcDNA=J023110G01,001-032-H07;Oryzabase=21672;TENOR=Os04t0269600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	11236469	11236502	.	+	.	Parent=Os04t0269600-01
Chr04	irgsp1_rep	CDS	11236503	11237519	.	+	0	Parent=Os04t0269600-01
Chr04	irgsp1_rep	three_prime_UTR	11237520	11237878	.	+	.	Parent=Os04t0269600-01
Chr04	irgsp1_rep	three_prime_UTR	11239487	11239600	.	+	.	Parent=Os04t0269600-01
Chr04	irgsp1_rep	three_prime_UTR	11242512	11242961	.	+	.	Parent=Os04t0269600-01
Chr04	irgsp1_rep	three_prime_UTR	11243338	11243435	.	+	.	Parent=Os04t0269600-01
Chr04	irgsp1_rep	three_prime_UTR	11243548	11243987	.	+	.	Parent=Os04t0269600-01
Chr04	irgsp1_rep	mRNA	11236469	11243962	.	+	.	ID=Os04t0269600-02;Name=Os04t0269600-02;Locus_id=Os04g0269600;CGSNL Gene Symbol=DAO2;CGSNL Gene Name=DIAMINE OXIDASE 2;Oryzabase Gene Symbol Synonym(s)=OsDAO2%2C OsCuDAO2%2C CuDAO2;Oryzabase Gene Name Synonym(s)=diamine oxidase 2%2C Copper-containing diamine oxidase 2;Note=Similar to cDNA clone:J023110G01%2C full insert sequence.;Transcript_evidence=AK066445 (DDBJ%2C Best hit);ORF_evidence=B7EQP9 (UniProt);GO=Biological Process: amine metabolic process (GO:0009308),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: copper ion binding (GO:0005507),Molecular Function: primary amine oxidase activity (GO:0008131),Molecular Function: quinone binding (GO:0048038);InterPro=Copper amine oxidase (IPR000269),Copper amine oxidase%2C C-terminal (IPR015798);NIAS_FLcDNA=J013066K20;Oryzabase=21672;Expression=AK066445;TENOR=Os04t0269600-02;KEGG=Os04t0269600-02 (EC:1.4.3.21)
Chr04	irgsp1_rep	five_prime_UTR	11236469	11237539	.	+	.	Parent=Os04t0269600-02
Chr04	irgsp1_rep	CDS	11237540	11237998	.	+	0	Parent=Os04t0269600-02
Chr04	irgsp1_rep	three_prime_UTR	11237999	11239388	.	+	.	Parent=Os04t0269600-02
Chr04	irgsp1_rep	three_prime_UTR	11239487	11239600	.	+	.	Parent=Os04t0269600-02
Chr04	irgsp1_rep	three_prime_UTR	11242512	11242961	.	+	.	Parent=Os04t0269600-02
Chr04	irgsp1_rep	three_prime_UTR	11243338	11243435	.	+	.	Parent=Os04t0269600-02
Chr04	irgsp1_rep	three_prime_UTR	11243548	11243962	.	+	.	Parent=Os04t0269600-02
Chr04	irgsp1_rep	mRNA	11236471	11238454	.	+	.	ID=Os04t0269600-03;Name=Os04t0269600-03;Locus_id=Os04g0269600;CGSNL Gene Symbol=DAO2;CGSNL Gene Name=DIAMINE OXIDASE 2;Oryzabase Gene Symbol Synonym(s)=OsDAO2%2C OsCuDAO2%2C CuDAO2;Oryzabase Gene Name Synonym(s)=diamine oxidase 2%2C Copper-containing diamine oxidase 2;Note=Hypothetical conserved gene.;Transcript_evidence=AK062589 (DDBJ%2C Best hit);ORF_evidence=B9RBR2 (UniProt);GO=Biological Process: amine metabolic process (GO:0009308),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: copper ion binding (GO:0005507),Molecular Function: primary amine oxidase activity (GO:0008131),Molecular Function: quinone binding (GO:0048038);InterPro=Copper amine oxidase (IPR000269),Copper amine oxidase%2C N2-terminal (IPR015800),Copper amine oxidase%2C N2/N3-terminal (IPR015801),Copper amine oxidase%2C N3-terminal (IPR015802),Copper amine oxidase%2C N-terminal (IPR016182);NIAS_FLcDNA=001-100-G06;Oryzabase=21672;Expression=AK062589;TENOR=Os04t0269600-03;KEGG=Os04t0269600-03
Chr04	irgsp1_rep	CDS	11236471	11236538	.	+	0	Parent=Os04t0269600-03
Chr04	irgsp1_rep	CDS	11236661	11237519	.	+	1	Parent=Os04t0269600-03
Chr04	irgsp1_rep	three_prime_UTR	11237520	11237878	.	+	.	Parent=Os04t0269600-03
Chr04	irgsp1_rep	three_prime_UTR	11238211	11238454	.	+	.	Parent=Os04t0269600-03
Chr04	irgsp1_rep	mRNA	11237886	11243987	.	+	.	ID=Os04t0269600-04;Name=Os04t0269600-04;Locus_id=Os04g0269600;CGSNL Gene Symbol=DAO2;CGSNL Gene Name=DIAMINE OXIDASE 2;Oryzabase Gene Symbol Synonym(s)=OsDAO2%2C OsCuDAO2%2C CuDAO2;Oryzabase Gene Name Synonym(s)=diamine oxidase 2%2C Copper-containing diamine oxidase 2;Note=Similar to cDNA clone:J023110G01%2C full insert sequence.;Transcript_evidence=AK066862 (DDBJ%2C Best hit);ORF_evidence=B7EQP9 (UniProt);GO=Biological Process: amine metabolic process (GO:0009308),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: copper ion binding (GO:0005507),Molecular Function: primary amine oxidase activity (GO:0008131),Molecular Function: quinone binding (GO:0048038);InterPro=Copper amine oxidase (IPR000269),Copper amine oxidase%2C C-terminal (IPR015798);NIAS_FLcDNA=J013081M15;Oryzabase=21672;Expression=AK066862;TENOR=Os04t0269600-04;KEGG=Os04t0269600-04
Chr04	irgsp1_rep	five_prime_UTR	11237886	11239480	.	+	.	Parent=Os04t0269600-04
Chr04	irgsp1_rep	CDS	11239481	11239600	.	+	0	Parent=Os04t0269600-04
Chr04	irgsp1_rep	CDS	11242512	11242961	.	+	0	Parent=Os04t0269600-04
Chr04	irgsp1_rep	CDS	11243338	11243435	.	+	0	Parent=Os04t0269600-04
Chr04	irgsp1_rep	CDS	11243548	11243761	.	+	1	Parent=Os04t0269600-04
Chr04	irgsp1_rep	three_prime_UTR	11243762	11243987	.	+	.	Parent=Os04t0269600-04
Chr04	irgsp1_rep	mRNA	11250041	11254736	.	+	.	ID=Os04t0269700-01;Name=Os04t0269700-01;Locus_id=Os04g0269700;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK069600 (DDBJ%2C Best hit);ORF_evidence=B6THH7 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Esterase%2C SGNH hydrolase-type%2C subgroup (IPR013831);NIAS_FLcDNA=J023024A11;Expression=AK069600;TENOR=Os04t0269700-01;KEGG=Os04t0269700-01
Chr04	irgsp1_rep	five_prime_UTR	11250041	11250042	.	+	.	Parent=Os04t0269700-01
Chr04	irgsp1_rep	CDS	11250043	11250467	.	+	0	Parent=Os04t0269700-01
Chr04	irgsp1_rep	CDS	11251116	11251283	.	+	1	Parent=Os04t0269700-01
Chr04	irgsp1_rep	CDS	11252807	11252843	.	+	1	Parent=Os04t0269700-01
Chr04	irgsp1_rep	three_prime_UTR	11252844	11253012	.	+	.	Parent=Os04t0269700-01
Chr04	irgsp1_rep	three_prime_UTR	11253292	11254736	.	+	.	Parent=Os04t0269700-01
Chr04	irgsp1_rep	mRNA	11255676	11258882	.	+	.	ID=Os04t0269800-01;Name=Os04t0269800-01;Locus_id=Os04g0269800;Note=Conserved hypothetical protein.;Transcript_evidence=AK242319 (DDBJ%2C Best hit);ORF_evidence=Q7X7P6 (UniProt);NIAS_FLcDNA=J075196C12;TENOR=Os04t0269800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	11255676	11256102	.	+	.	Parent=Os04t0269800-01
Chr04	irgsp1_rep	CDS	11256103	11256136	.	+	0	Parent=Os04t0269800-01
Chr04	irgsp1_rep	CDS	11256316	11256432	.	+	2	Parent=Os04t0269800-01
Chr04	irgsp1_rep	CDS	11256645	11256664	.	+	2	Parent=Os04t0269800-01
Chr04	irgsp1_rep	three_prime_UTR	11256665	11256745	.	+	.	Parent=Os04t0269800-01
Chr04	irgsp1_rep	three_prime_UTR	11257258	11258882	.	+	.	Parent=Os04t0269800-01
Chr04	irgsp1_rep	mRNA	11264550	11271530	.	-	.	ID=Os04t0269900-01;Name=Os04t0269900-01;Locus_id=Os04g0269900;Note=Conserved hypothetical protein.;Transcript_evidence=AK120550 (DDBJ%2C Best hit);ORF_evidence=NP_001174798.1 (RefSeq);NIAS_FLcDNA=J013130B09;TENOR=Os04t0269900-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	11271091	11271530	.	-	.	Parent=Os04t0269900-01
Chr04	irgsp1_rep	five_prime_UTR	11270668	11271011	.	-	.	Parent=Os04t0269900-01
Chr04	irgsp1_rep	five_prime_UTR	11270334	11270490	.	-	.	Parent=Os04t0269900-01
Chr04	irgsp1_rep	CDS	11270169	11270333	.	-	0	Parent=Os04t0269900-01
Chr04	irgsp1_rep	three_prime_UTR	11265388	11270168	.	-	.	Parent=Os04t0269900-01
Chr04	irgsp1_rep	three_prime_UTR	11264550	11264978	.	-	.	Parent=Os04t0269900-01
Chr04	irgsp1_rep	mRNA	11272522	11284617	.	+	.	ID=Os04t0270100-01;Name=Os04t0270100-01;Locus_id=Os04g0270100;Note=Similar to GTP-binding protein.;Transcript_evidence=AK063713 (DDBJ%2C Best hit);ORF_evidence=A4ZCD1 (UniProt);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Protein synthesis factor%2C GTP-binding (IPR000795),Translation elongation factor EFTu/EF1A%2C C-terminal (IPR004160),Translation elongation factor EFTu/EF1A%2C domain 2 (IPR004161),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Translation elongation factor EF1A/initiation factor IF2gamma%2C C-terminal (IPR009001);NIAS_FLcDNA=001-120-C02;TENOR=Os04t0270100-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	11272522	11272696	.	+	.	Parent=Os04t0270100-01
Chr04	irgsp1_rep	CDS	11272697	11272904	.	+	0	Parent=Os04t0270100-01
Chr04	irgsp1_rep	CDS	11274115	11274165	.	+	2	Parent=Os04t0270100-01
Chr04	irgsp1_rep	CDS	11274512	11274598	.	+	2	Parent=Os04t0270100-01
Chr04	irgsp1_rep	CDS	11276584	11276695	.	+	2	Parent=Os04t0270100-01
Chr04	irgsp1_rep	CDS	11277387	11277432	.	+	1	Parent=Os04t0270100-01
Chr04	irgsp1_rep	CDS	11277712	11277783	.	+	0	Parent=Os04t0270100-01
Chr04	irgsp1_rep	CDS	11280407	11280469	.	+	0	Parent=Os04t0270100-01
Chr04	irgsp1_rep	CDS	11280565	11280719	.	+	0	Parent=Os04t0270100-01
Chr04	irgsp1_rep	CDS	11280830	11280894	.	+	1	Parent=Os04t0270100-01
Chr04	irgsp1_rep	CDS	11282172	11282322	.	+	2	Parent=Os04t0270100-01
Chr04	irgsp1_rep	CDS	11282757	11282862	.	+	1	Parent=Os04t0270100-01
Chr04	irgsp1_rep	CDS	11282967	11283102	.	+	0	Parent=Os04t0270100-01
Chr04	irgsp1_rep	CDS	11283837	11283901	.	+	2	Parent=Os04t0270100-01
Chr04	irgsp1_rep	CDS	11284530	11284617	.	+	0	Parent=Os04t0270100-01
Chr04	irgsp1_rep	mRNA	11272564	11276661	.	+	.	ID=Os04t0270100-02;Name=Os04t0270100-02;Locus_id=Os04g0270100;Note=Similar to GTP-binding protein.;Transcript_evidence=AK107968 (DDBJ%2C Best hit);ORF_evidence=A4ZCD1 (UniProt);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Protein synthesis factor%2C GTP-binding (IPR000795);NIAS_FLcDNA=002-135-D04;TENOR=Os04t0270100-02
Chr04	irgsp1_rep	five_prime_UTR	11272564	11272696	.	+	.	Parent=Os04t0270100-02
Chr04	irgsp1_rep	CDS	11272697	11272904	.	+	0	Parent=Os04t0270100-02
Chr04	irgsp1_rep	CDS	11274115	11274165	.	+	2	Parent=Os04t0270100-02
Chr04	irgsp1_rep	CDS	11274512	11274598	.	+	2	Parent=Os04t0270100-02
Chr04	irgsp1_rep	CDS	11276584	11276661	.	+	2	Parent=Os04t0270100-02
Chr04	irgsp1_rep	mRNA	11274511	11286248	.	+	.	ID=Os04t0270100-03;Name=Os04t0270100-03;Locus_id=Os04g0270100;Note=Similar to G1 to S phase transition protein 1 homolog (GTP-binding protein GST1- HS).;Transcript_evidence=AK105823 (DDBJ%2C Best hit);ORF_evidence=A4ZCD1 (UniProt);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Protein synthesis factor%2C GTP-binding (IPR000795),Translation elongation factor EFTu/EF1A%2C C-terminal (IPR004160),Translation elongation factor EFTu/EF1A%2C domain 2 (IPR004161),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Translation elongation factor EF1A/initiation factor IF2gamma%2C C-terminal (IPR009001);NIAS_FLcDNA=001-203-D09;Expression=AK105823;TENOR=Os04t0270100-03;KEGG=Os04t0270100-03;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	11274511	11274598	.	+	0	Parent=Os04t0270100-03
Chr04	irgsp1_rep	CDS	11276584	11276695	.	+	2	Parent=Os04t0270100-03
Chr04	irgsp1_rep	CDS	11277387	11277432	.	+	1	Parent=Os04t0270100-03
Chr04	irgsp1_rep	CDS	11277712	11277783	.	+	0	Parent=Os04t0270100-03
Chr04	irgsp1_rep	CDS	11280407	11280469	.	+	0	Parent=Os04t0270100-03
Chr04	irgsp1_rep	CDS	11280565	11280719	.	+	0	Parent=Os04t0270100-03
Chr04	irgsp1_rep	CDS	11280830	11280894	.	+	1	Parent=Os04t0270100-03
Chr04	irgsp1_rep	CDS	11282172	11282322	.	+	2	Parent=Os04t0270100-03
Chr04	irgsp1_rep	CDS	11282757	11282862	.	+	1	Parent=Os04t0270100-03
Chr04	irgsp1_rep	CDS	11282967	11283102	.	+	0	Parent=Os04t0270100-03
Chr04	irgsp1_rep	CDS	11283837	11283901	.	+	2	Parent=Os04t0270100-03
Chr04	irgsp1_rep	CDS	11284530	11284715	.	+	0	Parent=Os04t0270100-03
Chr04	irgsp1_rep	CDS	11284825	11284901	.	+	0	Parent=Os04t0270100-03
Chr04	irgsp1_rep	CDS	11285868	11285880	.	+	1	Parent=Os04t0270100-03
Chr04	irgsp1_rep	three_prime_UTR	11285881	11285949	.	+	.	Parent=Os04t0270100-03
Chr04	irgsp1_rep	three_prime_UTR	11286022	11286248	.	+	.	Parent=Os04t0270100-03
Chr04	irgsp1_rep	mRNA	11289925	11294110	.	-	.	ID=Os04t0270200-01;Name=Os04t0270200-01;Locus_id=Os04g0270200;Note=Uncharacterised protein family UPF0172 domain containing protein.;Transcript_evidence=AK061854 (DDBJ%2C Best hit),AK099002 (DDBJ%2C Best hit);ORF_evidence=NP_568832.1 (RefSeq);InterPro=Uncharacterised protein family UPF0172 (IPR005366);NIAS_FLcDNA=001-040-F11,J013110N19;Expression=AK061854;TENOR=Os04t0270200-01;KEGG=Os04t0270200-01
Chr04	irgsp1_rep	five_prime_UTR	11293992	11294110	.	-	.	Parent=Os04t0270200-01
Chr04	irgsp1_rep	CDS	11293620	11293991	.	-	0	Parent=Os04t0270200-01
Chr04	irgsp1_rep	CDS	11293452	11293511	.	-	0	Parent=Os04t0270200-01
Chr04	irgsp1_rep	CDS	11291288	11291454	.	-	0	Parent=Os04t0270200-01
Chr04	irgsp1_rep	CDS	11290125	11290155	.	-	1	Parent=Os04t0270200-01
Chr04	irgsp1_rep	three_prime_UTR	11289925	11290124	.	-	.	Parent=Os04t0270200-01
Chr04	irgsp1_rep	mRNA	11293609	11293992	.	+	.	ID=Os04t0270550-00;Name=Os04t0270550-00;Locus_id=Os04g0270550;Note=Hypothetical gene.;Transcript_evidence=EU948071 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0270550-00
Chr04	irgsp1_rep	five_prime_UTR	11293609	11293610	.	+	.	Parent=Os04t0270550-00
Chr04	irgsp1_rep	CDS	11293611	11293992	.	+	0	Parent=Os04t0270550-00
Chr04	irgsp1_rep	mRNA	11309480	11311083	.	-	.	ID=Os04t0270900-00;Name=Os04t0270900-00;Locus_id=Os04g0270900;Note=Hypothetical conserved gene.;Transcript_evidence=BT068630 (DDBJ);ORF_evidence=NP_001147564.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os04t0270900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	11311037	11311083	.	-	.	Parent=Os04t0270900-00
Chr04	irgsp1_rep	CDS	11309480	11311036	.	-	0	Parent=Os04t0270900-00
Chr04	irgsp1_rep	mRNA	11316236	11328577	.	-	.	ID=Os04t0271000-01;Name=Os04t0271000-01;Locus_id=Os04g0271000;RAP-DB Gene Symbol Synonym(s)=osSRT701%2C OsSIRT701%2C OsSRT1%2C OS-SIR2;RAP-DB Gene Name Synonym(s)=SILENT INFORMATION REGULATOR2 -Related Histone Deacetylase Gene;Oryzabase Gene Symbol Synonym(s)=osSRT701%2C OsSIRT701%2C OsSRT1%2C SRT1%2C OS-SIR2;Oryzabase Gene Name Synonym(s)=sirtuin 1;Note=NAD<sup>+</sup>-dependent histone deacetylase%2C Sir2 (silent information regulator 2) homolog%2C Seed development%2C Negative regulation of leaf senescence;Transcript_evidence=AK069000,AF159133 (indica);ORF_evidence=Q7XWV4,B8ARK7;GO=Molecular Function: NAD+ binding (GO:0070403);InterPro=Sirtuin family (IPR003000),DHS-like NAD/FAD-binding domain (IPR029035),Sirtuin family%2C catalytic core domain (IPR026590);NIAS_FLcDNA=J023002J24;Manual Curation=October 13%2C 2020;Literature_PMID=27477683,27181944,17468215;Oryzabase=11673;Expression=AK069000;TENOR=Os04t0271000-01;KEGG=Os04t0271000-01 (EC:2.4.2.31)
Chr04	irgsp1_rep	five_prime_UTR	11328518	11328577	.	-	.	Parent=Os04t0271000-01
Chr04	irgsp1_rep	five_prime_UTR	11328215	11328291	.	-	.	Parent=Os04t0271000-01
Chr04	irgsp1_rep	CDS	11328116	11328214	.	-	0	Parent=Os04t0271000-01
Chr04	irgsp1_rep	CDS	11327138	11327167	.	-	0	Parent=Os04t0271000-01
Chr04	irgsp1_rep	CDS	11326713	11326805	.	-	0	Parent=Os04t0271000-01
Chr04	irgsp1_rep	CDS	11325932	11326051	.	-	0	Parent=Os04t0271000-01
Chr04	irgsp1_rep	CDS	11324338	11324438	.	-	0	Parent=Os04t0271000-01
Chr04	irgsp1_rep	CDS	11324109	11324217	.	-	1	Parent=Os04t0271000-01
Chr04	irgsp1_rep	CDS	11323579	11323658	.	-	0	Parent=Os04t0271000-01
Chr04	irgsp1_rep	CDS	11321698	11321776	.	-	1	Parent=Os04t0271000-01
Chr04	irgsp1_rep	CDS	11319865	11319918	.	-	0	Parent=Os04t0271000-01
Chr04	irgsp1_rep	CDS	11319698	11319791	.	-	0	Parent=Os04t0271000-01
Chr04	irgsp1_rep	CDS	11319227	11319306	.	-	2	Parent=Os04t0271000-01
Chr04	irgsp1_rep	CDS	11317992	11318059	.	-	0	Parent=Os04t0271000-01
Chr04	irgsp1_rep	CDS	11317806	11317908	.	-	1	Parent=Os04t0271000-01
Chr04	irgsp1_rep	CDS	11316538	11316879	.	-	0	Parent=Os04t0271000-01
Chr04	irgsp1_rep	three_prime_UTR	11316236	11316537	.	-	.	Parent=Os04t0271000-01
Chr04	irgsp1_rep	mRNA	11316236	11322316	.	-	.	ID=Os04t0271000-02;Name=Os04t0271000-02;Locus_id=Os04g0271000;Oryzabase Gene Symbol Synonym(s)=osSRT701%2C OsSIRT701%2C OsSRT1%2C SRT1%2C OS-SIR2;Oryzabase Gene Name Synonym(s)=sirtuin 1;Note=Similar to SIR2-like protein.;Transcript_evidence=AK060337 (DDBJ%2C Best hit);ORF_evidence=Q9XGT1 (UniProt);NIAS_FLcDNA=001-008-C10;Oryzabase=11673;Expression=AK060337;TENOR=Os04t0271000-02;KEGG=Os04t0271000-02 (EC:2.4.2.31)
Chr04	irgsp1_rep	five_prime_UTR	11322284	11322316	.	-	.	Parent=Os04t0271000-02
Chr04	irgsp1_rep	CDS	11322258	11322283	.	-	0	Parent=Os04t0271000-02
Chr04	irgsp1_rep	CDS	11321698	11321776	.	-	1	Parent=Os04t0271000-02
Chr04	irgsp1_rep	CDS	11319861	11319918	.	-	0	Parent=Os04t0271000-02
Chr04	irgsp1_rep	CDS	11319733	11319791	.	-	2	Parent=Os04t0271000-02
Chr04	irgsp1_rep	three_prime_UTR	11319698	11319732	.	-	.	Parent=Os04t0271000-02
Chr04	irgsp1_rep	three_prime_UTR	11319227	11319306	.	-	.	Parent=Os04t0271000-02
Chr04	irgsp1_rep	three_prime_UTR	11317992	11318059	.	-	.	Parent=Os04t0271000-02
Chr04	irgsp1_rep	three_prime_UTR	11317806	11317908	.	-	.	Parent=Os04t0271000-02
Chr04	irgsp1_rep	three_prime_UTR	11316236	11316879	.	-	.	Parent=Os04t0271000-02
Chr04	irgsp1_rep	mRNA	11336081	11338792	.	+	.	ID=Os04t0271200-01;Name=Os04t0271200-01;Locus_id=Os04g0271200;CGSNL Gene Symbol=PAS2;CGSNL Gene Name=PASTICCINO 2;Oryzabase Gene Symbol Synonym(s)=OsPAS2;Oryzabase Gene Name Synonym(s)=PASTICCINO2;Note=Protein-tyrosine phosphatase-like%2C PTPLA domain containing protein.;Transcript_evidence=AK060035 (DDBJ%2C Best hit);ORF_evidence=Q7XSZ4 (UniProt);InterPro=Protein-tyrosine phosphatase-like%2C PTPLA (IPR007482);NIAS_FLcDNA=006-304-A09;Oryzabase=19167;Expression=AK060035;TENOR=Os04t0271200-01;KEGG=Os04t0271200-01 (EC:4.2.1.-)
Chr04	irgsp1_rep	five_prime_UTR	11336081	11336109	.	+	.	Parent=Os04t0271200-01
Chr04	irgsp1_rep	CDS	11336110	11336180	.	+	0	Parent=Os04t0271200-01
Chr04	irgsp1_rep	CDS	11336266	11336377	.	+	1	Parent=Os04t0271200-01
Chr04	irgsp1_rep	CDS	11336922	11336940	.	+	0	Parent=Os04t0271200-01
Chr04	irgsp1_rep	CDS	11337199	11337287	.	+	2	Parent=Os04t0271200-01
Chr04	irgsp1_rep	CDS	11337707	11337760	.	+	0	Parent=Os04t0271200-01
Chr04	irgsp1_rep	CDS	11337911	11337981	.	+	0	Parent=Os04t0271200-01
Chr04	irgsp1_rep	CDS	11338085	11338166	.	+	1	Parent=Os04t0271200-01
Chr04	irgsp1_rep	CDS	11338266	11338362	.	+	0	Parent=Os04t0271200-01
Chr04	irgsp1_rep	CDS	11338483	11338553	.	+	2	Parent=Os04t0271200-01
Chr04	irgsp1_rep	three_prime_UTR	11338554	11338792	.	+	.	Parent=Os04t0271200-01
Chr04	irgsp1_rep	mRNA	11336231	11340189	.	-	.	ID=Os04t0271450-01;Name=Os04t0271450-01;Locus_id=Os04g0271450;Note=Non-protein coding transcript.;Transcript_evidence=AK288951 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090083K02;TENOR=Os04t0271450-01
Chr04	irgsp1_rep	exon	11336231	11340189	.	-	.	Parent=Os04t0271450-01
Chr04	irgsp1_rep	mRNA	11375556	11377317	.	-	.	ID=Os04t0271700-01;Name=Os04t0271700-01;Locus_id=Os04g0271700;Oryzabase Gene Symbol Synonym(s)=OscZOG1%2C cZOG1;Oryzabase Gene Name Synonym(s)=zeatin O-glucosyltransferase 1%2C cis-zeatin O-glucosyltransferase 1;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK059031 (DDBJ%2C Best hit);ORF_evidence=Q01HM6 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=001-021-C03;Oryzabase=20405;Expression=AK059031;TENOR=Os04t0271700-01;KEGG=Os04t0271700-01
Chr04	irgsp1_rep	five_prime_UTR	11377120	11377317	.	-	.	Parent=Os04t0271700-01
Chr04	irgsp1_rep	CDS	11375641	11377119	.	-	0	Parent=Os04t0271700-01
Chr04	irgsp1_rep	three_prime_UTR	11375556	11375640	.	-	.	Parent=Os04t0271700-01
Chr04	irgsp1_rep	mRNA	11375529	11377232	.	-	.	ID=Os04t0271700-02;Name=Os04t0271700-02;Locus_id=Os04g0271700;Oryzabase Gene Symbol Synonym(s)=OscZOG1%2C cZOG1;Oryzabase Gene Name Synonym(s)=zeatin O-glucosyltransferase 1%2C cis-zeatin O-glucosyltransferase 1;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK099145 (DDBJ%2C Best hit);ORF_evidence=Q01HM6 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J023059E20;Oryzabase=20405;Expression=AK099145;TENOR=Os04t0271700-02;KEGG=Os04t0271700-02
Chr04	irgsp1_rep	five_prime_UTR	11377120	11377232	.	-	.	Parent=Os04t0271700-02
Chr04	irgsp1_rep	CDS	11375641	11377119	.	-	0	Parent=Os04t0271700-02
Chr04	irgsp1_rep	three_prime_UTR	11375529	11375640	.	-	.	Parent=Os04t0271700-02
Chr04	irgsp1_rep	mRNA	11375483	11377200	.	-	.	ID=Os04t0271700-03;Name=Os04t0271700-03;Locus_id=Os04g0271700;Oryzabase Gene Symbol Synonym(s)=OscZOG1%2C cZOG1;Oryzabase Gene Name Synonym(s)=zeatin O-glucosyltransferase 1%2C cis-zeatin O-glucosyltransferase 1;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK070110 (DDBJ%2C Best hit);ORF_evidence=Q01HM6 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J023045L03;Oryzabase=20405;Expression=AK070110;TENOR=Os04t0271700-03;KEGG=Os04t0271700-03
Chr04	irgsp1_rep	five_prime_UTR	11377120	11377200	.	-	.	Parent=Os04t0271700-03
Chr04	irgsp1_rep	CDS	11375641	11377119	.	-	0	Parent=Os04t0271700-03
Chr04	irgsp1_rep	three_prime_UTR	11375483	11375640	.	-	.	Parent=Os04t0271700-03
Chr04	irgsp1_rep	mRNA	11408523	11410320	.	-	.	ID=Os04t0272200-01;Name=Os04t0272200-01;Locus_id=Os04g0272200;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK241002 (DDBJ%2C Best hit);ORF_evidence=Q01HM6 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J065053D12;TENOR=Os04t0272200-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	11410283	11410320	.	-	.	Parent=Os04t0272200-01
Chr04	irgsp1_rep	CDS	11408987	11410282	.	-	0	Parent=Os04t0272200-01
Chr04	irgsp1_rep	three_prime_UTR	11408523	11408986	.	-	.	Parent=Os04t0272200-01
Chr04	irgsp1_rep	mRNA	11421438	11423034	.	-	.	ID=Os04t0272400-01;Name=Os04t0272400-01;Locus_id=Os04g0272400;Note=Protein of unknown function DUF266%2C plant family protein.;Transcript_evidence=AK121455 (DDBJ%2C Best hit);ORF_evidence=Q01HM5 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: acetylglucosaminyltransferase activity (GO:0008375);InterPro=Glycosyl transferase%2C family 14 (IPR003406);NIAS_FLcDNA=J023142P15;Expression=AK121455;TENOR=Os04t0272400-01;KEGG=Os04t0272400-01
Chr04	irgsp1_rep	five_prime_UTR	11422825	11423034	.	-	.	Parent=Os04t0272400-01
Chr04	irgsp1_rep	CDS	11421586	11422824	.	-	0	Parent=Os04t0272400-01
Chr04	irgsp1_rep	three_prime_UTR	11421438	11421585	.	-	.	Parent=Os04t0272400-01
Chr04	irgsp1_rep	mRNA	11425702	11430464	.	-	.	ID=Os04t0272500-01;Name=Os04t0272500-01;Locus_id=Os04g0272500;Note=Conserved hypothetical protein.;Transcript_evidence=AK073642 (DDBJ%2C Best hit),AK099371 (DDBJ%2C Best hit);ORF_evidence=B9FE60 (UniProt);NIAS_FLcDNA=J033051M15,J033051L17;TENOR=Os04t0272500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	11430014	11430464	.	-	.	Parent=Os04t0272500-01
Chr04	irgsp1_rep	five_prime_UTR	11429930	11429947	.	-	.	Parent=Os04t0272500-01
Chr04	irgsp1_rep	CDS	11429883	11429929	.	-	0	Parent=Os04t0272500-01
Chr04	irgsp1_rep	CDS	11429643	11429751	.	-	1	Parent=Os04t0272500-01
Chr04	irgsp1_rep	three_prime_UTR	11429611	11429642	.	-	.	Parent=Os04t0272500-01
Chr04	irgsp1_rep	three_prime_UTR	11428522	11428768	.	-	.	Parent=Os04t0272500-01
Chr04	irgsp1_rep	three_prime_UTR	11426637	11426727	.	-	.	Parent=Os04t0272500-01
Chr04	irgsp1_rep	three_prime_UTR	11425702	11425913	.	-	.	Parent=Os04t0272500-01
Chr04	irgsp1_rep	mRNA	11450578	11452631	.	+	.	ID=Os04t0272700-01;Name=Os04t0272700-01;Locus_id=Os04g0272700;Note=Hypothetical gene.;Transcript_evidence=AK071659 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J023099M10;TENOR=Os04t0272700-01
Chr04	irgsp1_rep	five_prime_UTR	11450578	11452354	.	+	.	Parent=Os04t0272700-01
Chr04	irgsp1_rep	CDS	11452355	11452631	.	+	0	Parent=Os04t0272700-01
Chr04	irgsp1_rep	mRNA	11450581	11455773	.	+	.	ID=Os04t0272700-02;Name=Os04t0272700-02;Locus_id=Os04g0272700;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK068604 (DDBJ%2C Best hit);ORF_evidence=Q01HM4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J013157G05;Expression=AK068604;TENOR=Os04t0272700-02;KEGG=Os04t0272700-02
Chr04	irgsp1_rep	five_prime_UTR	11450581	11451033	.	+	.	Parent=Os04t0272700-02
Chr04	irgsp1_rep	five_prime_UTR	11451131	11451261	.	+	.	Parent=Os04t0272700-02
Chr04	irgsp1_rep	five_prime_UTR	11451499	11451594	.	+	.	Parent=Os04t0272700-02
Chr04	irgsp1_rep	five_prime_UTR	11452159	11454169	.	+	.	Parent=Os04t0272700-02
Chr04	irgsp1_rep	CDS	11454170	11455633	.	+	0	Parent=Os04t0272700-02
Chr04	irgsp1_rep	three_prime_UTR	11455634	11455773	.	+	.	Parent=Os04t0272700-02
Chr04	irgsp1_rep	mRNA	11450659	11452838	.	+	.	ID=Os04t0272700-03;Name=Os04t0272700-03;Locus_id=Os04g0272700;Note=Hypothetical conserved gene.;Transcript_evidence=AK106222 (DDBJ%2C Best hit);ORF_evidence=B9FE61 (UniProt);NIAS_FLcDNA=001-208-H09;Expression=AK106222;TENOR=Os04t0272700-03;KEGG=Os04t0272700-03
Chr04	irgsp1_rep	five_prime_UTR	11450659	11450675	.	+	.	Parent=Os04t0272700-03
Chr04	irgsp1_rep	CDS	11450676	11450829	.	+	0	Parent=Os04t0272700-03
Chr04	irgsp1_rep	CDS	11450904	11451033	.	+	2	Parent=Os04t0272700-03
Chr04	irgsp1_rep	CDS	11451499	11451532	.	+	1	Parent=Os04t0272700-03
Chr04	irgsp1_rep	three_prime_UTR	11451533	11451594	.	+	.	Parent=Os04t0272700-03
Chr04	irgsp1_rep	three_prime_UTR	11452159	11452838	.	+	.	Parent=Os04t0272700-03
Chr04	irgsp1_rep	mRNA	11454158	11455774	.	+	.	ID=Os04t0272700-04;Name=Os04t0272700-04;Locus_id=Os04g0272700;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK100189 (DDBJ%2C Best hit);ORF_evidence=Q01HM4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J023034P03;Expression=AK100189;TENOR=Os04t0272700-04;KEGG=Os04t0272700-04
Chr04	irgsp1_rep	five_prime_UTR	11454158	11454169	.	+	.	Parent=Os04t0272700-04
Chr04	irgsp1_rep	CDS	11454170	11455633	.	+	0	Parent=Os04t0272700-04
Chr04	irgsp1_rep	three_prime_UTR	11455634	11455774	.	+	.	Parent=Os04t0272700-04
Chr04	irgsp1_rep	mRNA	11454845	11455773	.	+	.	ID=Os04t0272700-05;Name=Os04t0272700-05;Locus_id=Os04g0272700;Note=Similar to OSIGBa0138E08-OSIGBa0161L23.3 protein.;Transcript_evidence=AK059765 (DDBJ%2C Best hit);ORF_evidence=Q01HM4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=006-203-G03;TENOR=Os04t0272700-05;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	11454845	11454874	.	+	.	Parent=Os04t0272700-05
Chr04	irgsp1_rep	CDS	11454875	11455633	.	+	0	Parent=Os04t0272700-05
Chr04	irgsp1_rep	three_prime_UTR	11455634	11455773	.	+	.	Parent=Os04t0272700-05
Chr04	irgsp1_rep	mRNA	11463290	11464387	.	+	.	ID=Os04t0273100-01;Name=Os04t0273100-01;Locus_id=Os04g0273100;Note=Similar to Transposase.;Transcript_evidence=AK110535 (DDBJ%2C Best hit);ORF_evidence=B9FE63 (UniProt);NIAS_FLcDNA=002-168-A08;Expression=AK110535;TENOR=Os04t0273100-01;KEGG=Os04t0273100-01
Chr04	irgsp1_rep	five_prime_UTR	11463290	11463390	.	+	.	Parent=Os04t0273100-01
Chr04	irgsp1_rep	CDS	11463391	11464026	.	+	0	Parent=Os04t0273100-01
Chr04	irgsp1_rep	three_prime_UTR	11464027	11464387	.	+	.	Parent=Os04t0273100-01
Chr04	irgsp1_rep	mRNA	11463433	11464047	.	-	.	ID=Os04t0273350-01;Name=Os04t0273350-01;Locus_id=Os04g0273350;Note=Non-protein coding transcript.;Transcript_evidence=AK062769 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-107-A01;TENOR=Os04t0273350-01
Chr04	irgsp1_rep	exon	11463433	11464047	.	-	.	Parent=Os04t0273350-01
Chr04	irgsp1_rep	mRNA	11472037	11473585	.	+	.	ID=Os04t0273600-00;Name=Os04t0273600-00;Locus_id=Os04g0273600;Note=Hypothetical conserved gene.;Transcript_evidence=FP100011 (DDBJ);ORF_evidence=Q01HM2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os04t0273600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	11472037	11473185	.	+	0	Parent=Os04t0273600-00
Chr04	irgsp1_rep	three_prime_UTR	11473186	11473585	.	+	.	Parent=Os04t0273600-00
Chr04	irgsp1_rep	mRNA	11478144	11483719	.	-	.	ID=Os04t0273900-00;Name=Os04t0273900-00;Locus_id=Os04g0273900;Note=Similar to OSIGBa0138E08-OSIGBa0161L23.6 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01HM1 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Methyl-CpG DNA binding (IPR001739),DNA-binding%2C integrase-type (IPR016177);TENOR=Os04t0273900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	11483531	11483719	.	-	0	Parent=Os04t0273900-00
Chr04	irgsp1_rep	CDS	11483228	11483353	.	-	0	Parent=Os04t0273900-00
Chr04	irgsp1_rep	CDS	11483033	11483110	.	-	0	Parent=Os04t0273900-00
Chr04	irgsp1_rep	CDS	11481733	11481858	.	-	0	Parent=Os04t0273900-00
Chr04	irgsp1_rep	CDS	11481507	11481608	.	-	0	Parent=Os04t0273900-00
Chr04	irgsp1_rep	CDS	11481272	11481418	.	-	0	Parent=Os04t0273900-00
Chr04	irgsp1_rep	CDS	11480209	11480335	.	-	0	Parent=Os04t0273900-00
Chr04	irgsp1_rep	CDS	11478144	11478364	.	-	2	Parent=Os04t0273900-00
Chr04	irgsp1_rep	mRNA	11498702	11499639	.	+	.	ID=Os04t0274100-00;Name=Os04t0274100-00;Locus_id=Os04g0274100;Note=Conserved hypothetical protein.;Transcript_evidence=FP091732 (DDBJ);ORF_evidence=XP_002448780.1 (RefSeq);TENOR=Os04t0274100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	11498702	11499541	.	+	0	Parent=Os04t0274100-00
Chr04	irgsp1_rep	three_prime_UTR	11499542	11499639	.	+	.	Parent=Os04t0274100-00
Chr04	irgsp1_rep	mRNA	11502407	11508304	.	-	.	ID=Os04t0274250-00;Name=Os04t0274250-00;Locus_id=Os04g0274250;Note=Similar to OSIGBa0138E08-OSIGBa0161L23.8 protein.;Transcript_evidence=AF320324 (DDBJ);ORF_evidence=Q01HL9 (UniProt);GO=Molecular Function: hydrolase activity%2C acting on glycosyl bonds (GO:0016798);InterPro=Carbohydrate-binding%2C CenC-like (IPR003305),Glycoside hydrolase%2C superfamily (IPR017853);TENOR=Os04t0274250-00;KEGG=Os04t0274250-00
Chr04	irgsp1_rep	CDS	11507993	11508304	.	-	0	Parent=Os04t0274250-00
Chr04	irgsp1_rep	CDS	11507821	11507875	.	-	0	Parent=Os04t0274250-00
Chr04	irgsp1_rep	CDS	11507174	11507370	.	-	2	Parent=Os04t0274250-00
Chr04	irgsp1_rep	CDS	11506836	11506957	.	-	0	Parent=Os04t0274250-00
Chr04	irgsp1_rep	CDS	11506606	11506753	.	-	1	Parent=Os04t0274250-00
Chr04	irgsp1_rep	CDS	11506283	11506352	.	-	0	Parent=Os04t0274250-00
Chr04	irgsp1_rep	CDS	11506052	11506197	.	-	2	Parent=Os04t0274250-00
Chr04	irgsp1_rep	CDS	11505915	11505972	.	-	0	Parent=Os04t0274250-00
Chr04	irgsp1_rep	CDS	11505290	11505351	.	-	2	Parent=Os04t0274250-00
Chr04	irgsp1_rep	three_prime_UTR	11505164	11505289	.	-	.	Parent=Os04t0274250-00
Chr04	irgsp1_rep	three_prime_UTR	11504594	11504712	.	-	.	Parent=Os04t0274250-00
Chr04	irgsp1_rep	three_prime_UTR	11504407	11504478	.	-	.	Parent=Os04t0274250-00
Chr04	irgsp1_rep	three_prime_UTR	11503825	11503928	.	-	.	Parent=Os04t0274250-00
Chr04	irgsp1_rep	three_prime_UTR	11503608	11503664	.	-	.	Parent=Os04t0274250-00
Chr04	irgsp1_rep	three_prime_UTR	11503332	11503524	.	-	.	Parent=Os04t0274250-00
Chr04	irgsp1_rep	three_prime_UTR	11502995	11503138	.	-	.	Parent=Os04t0274250-00
Chr04	irgsp1_rep	three_prime_UTR	11502407	11502558	.	-	.	Parent=Os04t0274250-00
Chr04	irgsp1_rep	mRNA	11510732	11515835	.	-	.	ID=Os04t0274400-01;Name=Os04t0274400-01;Locus_id=Os04g0274400;Note=Similar to OSIGBa0138E08-OSIGBa0161L23.9 protein.;Transcript_evidence=AK062600 (DDBJ%2C Best hit);ORF_evidence=Q01HL8 (UniProt);InterPro=YL1 nuclear%2C C-terminal (IPR013272);NIAS_FLcDNA=001-103-A03;TENOR=Os04t0274400-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	11515595	11515835	.	-	.	Parent=Os04t0274400-01
Chr04	irgsp1_rep	CDS	11515420	11515594	.	-	0	Parent=Os04t0274400-01
Chr04	irgsp1_rep	CDS	11513146	11513213	.	-	2	Parent=Os04t0274400-01
Chr04	irgsp1_rep	CDS	11511017	11511148	.	-	0	Parent=Os04t0274400-01
Chr04	irgsp1_rep	three_prime_UTR	11510732	11511016	.	-	.	Parent=Os04t0274400-01
Chr04	irgsp1_rep	mRNA	11569339	11574645	.	-	.	ID=Os04t0275100-01;Name=Os04t0275100-01;Locus_id=Os04g0275100;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK106614 (DDBJ%2C Best hit);ORF_evidence=Q01HJ7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=EGF-type aspartate/asparagine hydroxylation site (IPR000152),Protein kinase%2C catalytic domain (IPR000719),Epidermal growth factor-like%2C type 3 (IPR000742),EGF-like calcium-binding (IPR001881),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),EGF-like calcium-binding%2C conserved site (IPR018097);NIAS_FLcDNA=002-112-H08;Expression=AK106614;TENOR=Os04t0275100-01;KEGG=Os04t0275100-01
Chr04	irgsp1_rep	five_prime_UTR	11574641	11574645	.	-	.	Parent=Os04t0275100-01
Chr04	irgsp1_rep	CDS	11573668	11574640	.	-	0	Parent=Os04t0275100-01
Chr04	irgsp1_rep	CDS	11570937	11571098	.	-	2	Parent=Os04t0275100-01
Chr04	irgsp1_rep	CDS	11569663	11570849	.	-	2	Parent=Os04t0275100-01
Chr04	irgsp1_rep	three_prime_UTR	11569339	11569662	.	-	.	Parent=Os04t0275100-01
Chr04	irgsp1_rep	mRNA	11638394	11642909	.	+	.	ID=Os04t0275950-01;Name=Os04t0275950-01;Locus_id=Os04g0275950;Note=Conserved hypothetical protein.;Transcript_evidence=AK241416 (DDBJ%2C Best hit);ORF_evidence=NP_001173827.1 (RefSeq);NIAS_FLcDNA=J065160F11;TENOR=Os04t0275950-01
Chr04	irgsp1_rep	five_prime_UTR	11638394	11638394	.	+	.	Parent=Os04t0275950-01
Chr04	irgsp1_rep	CDS	11638395	11638472	.	+	0	Parent=Os04t0275950-01
Chr04	irgsp1_rep	CDS	11638566	11638809	.	+	0	Parent=Os04t0275950-01
Chr04	irgsp1_rep	CDS	11638887	11638993	.	+	2	Parent=Os04t0275950-01
Chr04	irgsp1_rep	three_prime_UTR	11638994	11638999	.	+	.	Parent=Os04t0275950-01
Chr04	irgsp1_rep	three_prime_UTR	11640840	11640893	.	+	.	Parent=Os04t0275950-01
Chr04	irgsp1_rep	three_prime_UTR	11642343	11642909	.	+	.	Parent=Os04t0275950-01
Chr04	irgsp1_rep	mRNA	11650394	11660149	.	+	.	ID=Os04t0276200-01;Name=Os04t0276200-01;Locus_id=Os04g0276200;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK073383 (DDBJ%2C Best hit);ORF_evidence=Q01HJ5 (UniProt);GO=Molecular Function: RNA binding (GO:0003723),Molecular Function: binding (GO:0005488);InterPro=Pumilio RNA-binding repeat (IPR001313),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033029C15;Expression=AK073383;TENOR=Os04t0276200-01;KEGG=Os04t0276200-01
Chr04	irgsp1_rep	five_prime_UTR	11650394	11650531	.	+	.	Parent=Os04t0276200-01
Chr04	irgsp1_rep	five_prime_UTR	11651269	11651285	.	+	.	Parent=Os04t0276200-01
Chr04	irgsp1_rep	CDS	11651286	11651501	.	+	0	Parent=Os04t0276200-01
Chr04	irgsp1_rep	CDS	11658074	11658792	.	+	0	Parent=Os04t0276200-01
Chr04	irgsp1_rep	CDS	11659054	11659216	.	+	1	Parent=Os04t0276200-01
Chr04	irgsp1_rep	three_prime_UTR	11659217	11659447	.	+	.	Parent=Os04t0276200-01
Chr04	irgsp1_rep	three_prime_UTR	11659828	11660149	.	+	.	Parent=Os04t0276200-01
Chr04	irgsp1_rep	mRNA	11652534	11653051	.	-	.	ID=Os04t0276300-00;Name=Os04t0276300-00;Locus_id=Os04g0276300;Note=Conserved hypothetical protein.;Transcript_evidence=BT085877 (DDBJ);ORF_evidence=NP_001047320.1 (RefSeq);TENOR=Os04t0276300-00
Chr04	irgsp1_rep	five_prime_UTR	11652989	11653051	.	-	.	Parent=Os04t0276300-00
Chr04	irgsp1_rep	CDS	11652692	11652988	.	-	0	Parent=Os04t0276300-00
Chr04	irgsp1_rep	three_prime_UTR	11652534	11652691	.	-	.	Parent=Os04t0276300-00
Chr04	irgsp1_rep	mRNA	11682337	11684694	.	-	.	ID=Os04t0276600-01;Name=Os04t0276600-01;Locus_id=Os04g0276600;Note=Protein of unknown function DUF303%2C acetylesterase putative domain containing protein.;Transcript_evidence=AK068009 (DDBJ%2C Best hit);ORF_evidence=Q01HJ1 (UniProt);InterPro=Domain of unknown function DUF303%2C acetylesterase putative (IPR005181),Esterase%2C SGNH hydrolase-type (IPR013830);NIAS_FLcDNA=J013129H13;Expression=AK068009;TENOR=Os04t0276600-01;KEGG=Os04t0276600-01
Chr04	irgsp1_rep	five_prime_UTR	11684645	11684694	.	-	.	Parent=Os04t0276600-01
Chr04	irgsp1_rep	CDS	11684138	11684644	.	-	0	Parent=Os04t0276600-01
Chr04	irgsp1_rep	CDS	11682684	11682890	.	-	0	Parent=Os04t0276600-01
Chr04	irgsp1_rep	three_prime_UTR	11682337	11682683	.	-	.	Parent=Os04t0276600-01
Chr04	irgsp1_rep	mRNA	11720537	11721804	.	+	.	ID=Os04t0277400-01;Name=Os04t0277400-01;Locus_id=Os04g0277400;Note=Membrane bound O-acyl transferase%2C MBOAT family protein.;Transcript_evidence=AK108867 (DDBJ%2C Best hit);ORF_evidence=Q01HI9 (UniProt);InterPro=Membrane bound O-acyl transferase%2C MBOAT (IPR004299),Wax synthase (IPR017088);NIAS_FLcDNA=002-152-C03;Expression=AK108867;TENOR=Os04t0277400-01;KEGG=Os04t0277400-01
Chr04	irgsp1_rep	five_prime_UTR	11720537	11720634	.	+	.	Parent=Os04t0277400-01
Chr04	irgsp1_rep	CDS	11720635	11721669	.	+	0	Parent=Os04t0277400-01
Chr04	irgsp1_rep	three_prime_UTR	11721670	11721804	.	+	.	Parent=Os04t0277400-01
Chr04	irgsp1_rep	mRNA	11743893	11747090	.	+	.	ID=Os04t0278000-01;Name=Os04t0278000-01;Locus_id=Os04g0278000;Note=Similar to PRLI-interacting factor G (Fragment).;Transcript_evidence=AK120988 (DDBJ%2C Best hit);ORF_evidence=Q7XLJ0 (UniProt);NIAS_FLcDNA=J023042M03;Expression=AK120988;TENOR=Os04t0278000-01;KEGG=Os04t0278000-01
Chr04	irgsp1_rep	five_prime_UTR	11743893	11744061	.	+	.	Parent=Os04t0278000-01
Chr04	irgsp1_rep	CDS	11744062	11744733	.	+	0	Parent=Os04t0278000-01
Chr04	irgsp1_rep	CDS	11745894	11746805	.	+	0	Parent=Os04t0278000-01
Chr04	irgsp1_rep	three_prime_UTR	11746806	11747090	.	+	.	Parent=Os04t0278000-01
Chr04	irgsp1_rep	mRNA	11747336	11750502	.	+	.	ID=Os04t0278100-00;Name=Os04t0278100-00;Locus_id=Os04g0278100;Note=Hypothetical protein.;Transcript_evidence=tplb0047g24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0278100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	11747336	11747854	.	+	.	Parent=Os04t0278100-00
Chr04	irgsp1_rep	CDS	11747855	11748419	.	+	0	Parent=Os04t0278100-00
Chr04	irgsp1_rep	CDS	11750172	11750260	.	+	2	Parent=Os04t0278100-00
Chr04	irgsp1_rep	three_prime_UTR	11750261	11750502	.	+	.	Parent=Os04t0278100-00
Chr04	irgsp1_rep	mRNA	11747201	11747620	.	-	.	ID=Os04t0278101-00;Name=Os04t0278101-00;Locus_id=Os04g0278101;Note=WD40-like Beta Propeller domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XLI9 (UniProt);InterPro=WD40-like Beta Propeller (IPR011659);TENOR=Os04t0278101-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	11747201	11747620	.	-	0	Parent=Os04t0278101-00
Chr04	irgsp1_rep	mRNA	11764702	11797975	.	+	.	ID=Os04t0278200-01;Name=Os04t0278200-01;Locus_id=Os04g0278200;Note=Hypothetical conserved gene.;Transcript_evidence=AK066988 (DDBJ%2C Best hit);ORF_evidence=B6TVT2 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide TPR-1 (IPR001440),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J013093O18;TENOR=Os04t0278200-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	11764702	11765213	.	+	.	Parent=Os04t0278200-01
Chr04	irgsp1_rep	five_prime_UTR	11765402	11765473	.	+	.	Parent=Os04t0278200-01
Chr04	irgsp1_rep	CDS	11765474	11765485	.	+	0	Parent=Os04t0278200-01
Chr04	irgsp1_rep	CDS	11767566	11767670	.	+	0	Parent=Os04t0278200-01
Chr04	irgsp1_rep	CDS	11768828	11768928	.	+	0	Parent=Os04t0278200-01
Chr04	irgsp1_rep	CDS	11771554	11771632	.	+	1	Parent=Os04t0278200-01
Chr04	irgsp1_rep	CDS	11772179	11772190	.	+	0	Parent=Os04t0278200-01
Chr04	irgsp1_rep	CDS	11772950	11773015	.	+	0	Parent=Os04t0278200-01
Chr04	irgsp1_rep	CDS	11774473	11774535	.	+	0	Parent=Os04t0278200-01
Chr04	irgsp1_rep	CDS	11774619	11774675	.	+	0	Parent=Os04t0278200-01
Chr04	irgsp1_rep	CDS	11781001	11781076	.	+	0	Parent=Os04t0278200-01
Chr04	irgsp1_rep	CDS	11782573	11782672	.	+	2	Parent=Os04t0278200-01
Chr04	irgsp1_rep	CDS	11782759	11782840	.	+	1	Parent=Os04t0278200-01
Chr04	irgsp1_rep	three_prime_UTR	11782841	11784170	.	+	.	Parent=Os04t0278200-01
Chr04	irgsp1_rep	three_prime_UTR	11784271	11784395	.	+	.	Parent=Os04t0278200-01
Chr04	irgsp1_rep	three_prime_UTR	11795165	11795264	.	+	.	Parent=Os04t0278200-01
Chr04	irgsp1_rep	three_prime_UTR	11796521	11796583	.	+	.	Parent=Os04t0278200-01
Chr04	irgsp1_rep	three_prime_UTR	11797130	11797189	.	+	.	Parent=Os04t0278200-01
Chr04	irgsp1_rep	three_prime_UTR	11797348	11797975	.	+	.	Parent=Os04t0278200-01
Chr04	irgsp1_rep	mRNA	11764781	11797970	.	+	.	ID=Os04t0278200-02;Name=Os04t0278200-02;Locus_id=Os04g0278200;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK065786 (DDBJ%2C Best hit);ORF_evidence=B6TVT2 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide TPR-1 (IPR001440),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J013039J24;TENOR=Os04t0278200-02;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	11764781	11765213	.	+	.	Parent=Os04t0278200-02
Chr04	irgsp1_rep	five_prime_UTR	11765402	11765473	.	+	.	Parent=Os04t0278200-02
Chr04	irgsp1_rep	CDS	11765474	11765485	.	+	0	Parent=Os04t0278200-02
Chr04	irgsp1_rep	CDS	11766120	11766272	.	+	0	Parent=Os04t0278200-02
Chr04	irgsp1_rep	CDS	11767566	11767670	.	+	0	Parent=Os04t0278200-02
Chr04	irgsp1_rep	CDS	11768828	11768928	.	+	0	Parent=Os04t0278200-02
Chr04	irgsp1_rep	CDS	11771554	11771632	.	+	1	Parent=Os04t0278200-02
Chr04	irgsp1_rep	CDS	11772179	11772190	.	+	0	Parent=Os04t0278200-02
Chr04	irgsp1_rep	CDS	11772950	11773015	.	+	0	Parent=Os04t0278200-02
Chr04	irgsp1_rep	CDS	11774473	11774535	.	+	0	Parent=Os04t0278200-02
Chr04	irgsp1_rep	CDS	11774619	11774675	.	+	0	Parent=Os04t0278200-02
Chr04	irgsp1_rep	CDS	11781001	11781076	.	+	0	Parent=Os04t0278200-02
Chr04	irgsp1_rep	CDS	11782573	11782672	.	+	2	Parent=Os04t0278200-02
Chr04	irgsp1_rep	CDS	11782759	11782804	.	+	1	Parent=Os04t0278200-02
Chr04	irgsp1_rep	CDS	11782937	11783056	.	+	0	Parent=Os04t0278200-02
Chr04	irgsp1_rep	three_prime_UTR	11783057	11784170	.	+	.	Parent=Os04t0278200-02
Chr04	irgsp1_rep	three_prime_UTR	11784271	11784395	.	+	.	Parent=Os04t0278200-02
Chr04	irgsp1_rep	three_prime_UTR	11794559	11794791	.	+	.	Parent=Os04t0278200-02
Chr04	irgsp1_rep	three_prime_UTR	11795165	11795264	.	+	.	Parent=Os04t0278200-02
Chr04	irgsp1_rep	three_prime_UTR	11796521	11796583	.	+	.	Parent=Os04t0278200-02
Chr04	irgsp1_rep	three_prime_UTR	11797130	11797189	.	+	.	Parent=Os04t0278200-02
Chr04	irgsp1_rep	three_prime_UTR	11797348	11797970	.	+	.	Parent=Os04t0278200-02
Chr04	irgsp1_rep	mRNA	11766076	11797526	.	-	.	ID=Os04t0278550-00;Name=Os04t0278550-00;Locus_id=Os04g0278550;Note=Hypothetical protein.;Transcript_evidence=tplb0057i04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0278550-00
Chr04	irgsp1_rep	five_prime_UTR	11797334	11797526	.	-	.	Parent=Os04t0278550-00
Chr04	irgsp1_rep	five_prime_UTR	11797134	11797177	.	-	.	Parent=Os04t0278550-00
Chr04	irgsp1_rep	five_prime_UTR	11796484	11796586	.	-	.	Parent=Os04t0278550-00
Chr04	irgsp1_rep	five_prime_UTR	11795133	11795273	.	-	.	Parent=Os04t0278550-00
Chr04	irgsp1_rep	five_prime_UTR	11784237	11784418	.	-	.	Parent=Os04t0278550-00
Chr04	irgsp1_rep	five_prime_UTR	11782593	11782686	.	-	.	Parent=Os04t0278550-00
Chr04	irgsp1_rep	five_prime_UTR	11780991	11781099	.	-	.	Parent=Os04t0278550-00
Chr04	irgsp1_rep	five_prime_UTR	11774546	11774666	.	-	.	Parent=Os04t0278550-00
Chr04	irgsp1_rep	five_prime_UTR	11772917	11773018	.	-	.	Parent=Os04t0278550-00
Chr04	irgsp1_rep	five_prime_UTR	11768964	11768994	.	-	.	Parent=Os04t0278550-00
Chr04	irgsp1_rep	CDS	11768813	11768963	.	-	0	Parent=Os04t0278550-00
Chr04	irgsp1_rep	CDS	11767567	11767658	.	-	2	Parent=Os04t0278550-00
Chr04	irgsp1_rep	CDS	11766241	11766273	.	-	0	Parent=Os04t0278550-00
Chr04	irgsp1_rep	three_prime_UTR	11766076	11766240	.	-	.	Parent=Os04t0278550-00
Chr04	irgsp1_rep	mRNA	11811566	11814969	.	-	.	ID=Os04t0278900-01;Name=Os04t0278900-01;Locus_id=Os04g0278900;Note=Similar to OSIGBa0113C11.1 protein.;Transcript_evidence=AK108886 (DDBJ%2C Best hit);ORF_evidence=C0PDX7 (UniProt);GO=Biological Process: tRNA processing (GO:0008033),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: tRNA dihydrouridine synthase activity (GO:0017150),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=tRNA-dihydrouridine synthase (IPR001269),Aldolase-type TIM barrel (IPR013785),tRNA-dihydrouridine synthase%2C conserved site (IPR018517);NIAS_FLcDNA=002-152-D12;Expression=AK108886;TENOR=Os04t0278900-01;KEGG=Os04t0278900-01 (EC:1.-.-.-)
Chr04	irgsp1_rep	five_prime_UTR	11814859	11814969	.	-	.	Parent=Os04t0278900-01
Chr04	irgsp1_rep	CDS	11814662	11814858	.	-	0	Parent=Os04t0278900-01
Chr04	irgsp1_rep	CDS	11814422	11814548	.	-	1	Parent=Os04t0278900-01
Chr04	irgsp1_rep	CDS	11813404	11813531	.	-	0	Parent=Os04t0278900-01
Chr04	irgsp1_rep	CDS	11813250	11813319	.	-	1	Parent=Os04t0278900-01
Chr04	irgsp1_rep	CDS	11813055	11813157	.	-	0	Parent=Os04t0278900-01
Chr04	irgsp1_rep	CDS	11811613	11811761	.	-	2	Parent=Os04t0278900-01
Chr04	irgsp1_rep	three_prime_UTR	11811566	11811612	.	-	.	Parent=Os04t0278900-01
Chr04	irgsp1_rep	mRNA	11801258	11814930	.	-	.	ID=Os04t0278900-02;Name=Os04t0278900-02;Locus_id=Os04g0278900;Note=tRNA-dihydrouridine synthase domain containing protein.;Transcript_evidence=AK073070 (DDBJ%2C Best hit);ORF_evidence=Q01LS4 (UniProt);GO=Biological Process: tRNA processing (GO:0008033),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: tRNA dihydrouridine synthase activity (GO:0017150),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=tRNA-dihydrouridine synthase (IPR001269),Aldolase-type TIM barrel (IPR013785),tRNA-dihydrouridine synthase%2C conserved site (IPR018517);NIAS_FLcDNA=J033013H23;Expression=AK073070;TENOR=Os04t0278900-02;KEGG=Os04t0278900-02 (EC:1.-.-.-)
Chr04	irgsp1_rep	five_prime_UTR	11814749	11814930	.	-	.	Parent=Os04t0278900-02
Chr04	irgsp1_rep	five_prime_UTR	11814662	11814714	.	-	.	Parent=Os04t0278900-02
Chr04	irgsp1_rep	five_prime_UTR	11814539	11814548	.	-	.	Parent=Os04t0278900-02
Chr04	irgsp1_rep	CDS	11814422	11814538	.	-	0	Parent=Os04t0278900-02
Chr04	irgsp1_rep	CDS	11813404	11813531	.	-	0	Parent=Os04t0278900-02
Chr04	irgsp1_rep	CDS	11813250	11813319	.	-	1	Parent=Os04t0278900-02
Chr04	irgsp1_rep	CDS	11813055	11813157	.	-	0	Parent=Os04t0278900-02
Chr04	irgsp1_rep	CDS	11811644	11811761	.	-	2	Parent=Os04t0278900-02
Chr04	irgsp1_rep	CDS	11803735	11803816	.	-	1	Parent=Os04t0278900-02
Chr04	irgsp1_rep	CDS	11803377	11803438	.	-	0	Parent=Os04t0278900-02
Chr04	irgsp1_rep	CDS	11803152	11803224	.	-	1	Parent=Os04t0278900-02
Chr04	irgsp1_rep	CDS	11802990	11803073	.	-	0	Parent=Os04t0278900-02
Chr04	irgsp1_rep	CDS	11802422	11802502	.	-	0	Parent=Os04t0278900-02
Chr04	irgsp1_rep	CDS	11801429	11801617	.	-	0	Parent=Os04t0278900-02
Chr04	irgsp1_rep	three_prime_UTR	11801258	11801428	.	-	.	Parent=Os04t0278900-02
Chr04	irgsp1_rep	mRNA	11824122	11824179	.	-	.	ID=Os04t0279300-00;Name=Os04t0279300-00;Locus_id=Os04g0279300;Note=Non-protein coding transcript.;Transcript_evidence=EU944121 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0279300-00
Chr04	irgsp1_rep	exon	11824122	11824179	.	-	.	Parent=Os04t0279300-00
Chr04	irgsp1_rep	mRNA	11825203	11826111	.	+	.	ID=Os04t0279700-00;Name=Os04t0279700-00;Locus_id=Os04g0279700;Note=Similar to F-box domain containing protein%2C expressed.;Transcript_evidence=AK367184 (DDBJ);ORF_evidence=Q336Q6 (UniProt);TENOR=Os04t0279700-00
Chr04	irgsp1_rep	CDS	11825203	11826111	.	+	0	Parent=Os04t0279700-00
Chr04	irgsp1_rep	mRNA	11869141	11887415	.	+	.	ID=Os04t0280200-01;Name=Os04t0280200-01;Locus_id=Os04g0280200;Note=Hypothetical conserved gene.;Transcript_evidence=AK241624 (DDBJ%2C Best hit);ORF_evidence=B9FE79 (UniProt);GO=Biological Process: phosphate-containing compound metabolic process (GO:0006796),Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: kinase activity (GO:0016301),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=Uridine kinase (IPR000764),ATPase%2C AAA+ type%2C core (IPR003593),Phosphoribulokinase/uridine kinase (IPR006083),CYTH domain (IPR008172),CYTH-like domain (IPR023577);NIAS_FLcDNA=J065186P16;TENOR=Os04t0280200-01;KEGG=Os04t0280200-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	11869141	11869141	.	+	.	Parent=Os04t0280200-01
Chr04	irgsp1_rep	CDS	11869142	11869309	.	+	0	Parent=Os04t0280200-01
Chr04	irgsp1_rep	CDS	11869398	11869513	.	+	0	Parent=Os04t0280200-01
Chr04	irgsp1_rep	CDS	11869602	11869737	.	+	1	Parent=Os04t0280200-01
Chr04	irgsp1_rep	CDS	11871619	11871717	.	+	0	Parent=Os04t0280200-01
Chr04	irgsp1_rep	CDS	11871806	11871874	.	+	0	Parent=Os04t0280200-01
Chr04	irgsp1_rep	CDS	11871954	11872244	.	+	0	Parent=Os04t0280200-01
Chr04	irgsp1_rep	CDS	11872710	11872765	.	+	0	Parent=Os04t0280200-01
Chr04	irgsp1_rep	CDS	11872954	11873113	.	+	1	Parent=Os04t0280200-01
Chr04	irgsp1_rep	CDS	11874023	11874187	.	+	0	Parent=Os04t0280200-01
Chr04	irgsp1_rep	CDS	11874973	11875057	.	+	0	Parent=Os04t0280200-01
Chr04	irgsp1_rep	CDS	11875135	11875338	.	+	2	Parent=Os04t0280200-01
Chr04	irgsp1_rep	CDS	11875885	11875976	.	+	2	Parent=Os04t0280200-01
Chr04	irgsp1_rep	CDS	11876060	11876102	.	+	0	Parent=Os04t0280200-01
Chr04	irgsp1_rep	CDS	11878215	11878372	.	+	2	Parent=Os04t0280200-01
Chr04	irgsp1_rep	CDS	11879008	11879118	.	+	0	Parent=Os04t0280200-01
Chr04	irgsp1_rep	CDS	11881204	11881272	.	+	0	Parent=Os04t0280200-01
Chr04	irgsp1_rep	CDS	11881402	11881545	.	+	0	Parent=Os04t0280200-01
Chr04	irgsp1_rep	CDS	11881669	11881743	.	+	0	Parent=Os04t0280200-01
Chr04	irgsp1_rep	CDS	11881818	11881994	.	+	0	Parent=Os04t0280200-01
Chr04	irgsp1_rep	CDS	11882086	11882171	.	+	0	Parent=Os04t0280200-01
Chr04	irgsp1_rep	CDS	11883748	11883802	.	+	1	Parent=Os04t0280200-01
Chr04	irgsp1_rep	CDS	11885594	11885719	.	+	0	Parent=Os04t0280200-01
Chr04	irgsp1_rep	CDS	11885808	11885921	.	+	0	Parent=Os04t0280200-01
Chr04	irgsp1_rep	CDS	11886697	11886816	.	+	0	Parent=Os04t0280200-01
Chr04	irgsp1_rep	CDS	11886974	11887048	.	+	0	Parent=Os04t0280200-01
Chr04	irgsp1_rep	three_prime_UTR	11887049	11887112	.	+	.	Parent=Os04t0280200-01
Chr04	irgsp1_rep	three_prime_UTR	11887187	11887415	.	+	.	Parent=Os04t0280200-01
Chr04	irgsp1_rep	mRNA	11869166	11887359	.	-	.	ID=Os04t0280251-00;Name=Os04t0280251-00;Locus_id=Os04g0280251;Note=Hypothetical protein.;Transcript_evidence=tplb0045d06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0280251-00
Chr04	irgsp1_rep	five_prime_UTR	11887172	11887359	.	-	.	Parent=Os04t0280251-00
Chr04	irgsp1_rep	five_prime_UTR	11886985	11887098	.	-	.	Parent=Os04t0280251-00
Chr04	irgsp1_rep	five_prime_UTR	11886697	11886825	.	-	.	Parent=Os04t0280251-00
Chr04	irgsp1_rep	five_prime_UTR	11885806	11885921	.	-	.	Parent=Os04t0280251-00
Chr04	irgsp1_rep	five_prime_UTR	11885591	11885717	.	-	.	Parent=Os04t0280251-00
Chr04	irgsp1_rep	five_prime_UTR	11883733	11883799	.	-	.	Parent=Os04t0280251-00
Chr04	irgsp1_rep	five_prime_UTR	11882084	11882157	.	-	.	Parent=Os04t0280251-00
Chr04	irgsp1_rep	five_prime_UTR	11881833	11881992	.	-	.	Parent=Os04t0280251-00
Chr04	irgsp1_rep	five_prime_UTR	11881658	11881754	.	-	.	Parent=Os04t0280251-00
Chr04	irgsp1_rep	five_prime_UTR	11881402	11881540	.	-	.	Parent=Os04t0280251-00
Chr04	irgsp1_rep	five_prime_UTR	11881203	11881272	.	-	.	Parent=Os04t0280251-00
Chr04	irgsp1_rep	five_prime_UTR	11879011	11879117	.	-	.	Parent=Os04t0280251-00
Chr04	irgsp1_rep	five_prime_UTR	11878200	11878379	.	-	.	Parent=Os04t0280251-00
Chr04	irgsp1_rep	five_prime_UTR	11875877	11875993	.	-	.	Parent=Os04t0280251-00
Chr04	irgsp1_rep	five_prime_UTR	11875133	11875330	.	-	.	Parent=Os04t0280251-00
Chr04	irgsp1_rep	five_prime_UTR	11874971	11875055	.	-	.	Parent=Os04t0280251-00
Chr04	irgsp1_rep	five_prime_UTR	11874021	11874185	.	-	.	Parent=Os04t0280251-00
Chr04	irgsp1_rep	five_prime_UTR	11872954	11873111	.	-	.	Parent=Os04t0280251-00
Chr04	irgsp1_rep	five_prime_UTR	11872705	11872765	.	-	.	Parent=Os04t0280251-00
Chr04	irgsp1_rep	five_prime_UTR	11872164	11872240	.	-	.	Parent=Os04t0280251-00
Chr04	irgsp1_rep	five_prime_UTR	11871949	11872096	.	-	.	Parent=Os04t0280251-00
Chr04	irgsp1_rep	five_prime_UTR	11871794	11871869	.	-	.	Parent=Os04t0280251-00
Chr04	irgsp1_rep	five_prime_UTR	11871600	11871709	.	-	.	Parent=Os04t0280251-00
Chr04	irgsp1_rep	five_prime_UTR	11869653	11869723	.	-	.	Parent=Os04t0280251-00
Chr04	irgsp1_rep	CDS	11869586	11869652	.	-	0	Parent=Os04t0280251-00
Chr04	irgsp1_rep	CDS	11869407	11869498	.	-	2	Parent=Os04t0280251-00
Chr04	irgsp1_rep	CDS	11869166	11869319	.	-	0	Parent=Os04t0280251-00
Chr04	irgsp1_rep	mRNA	11887808	11888852	.	-	.	ID=Os04t0280300-01;Name=Os04t0280300-01;Locus_id=Os04g0280300;Note=Conserved hypothetical protein.;Transcript_evidence=AK102623 (DDBJ%2C Best hit);ORF_evidence=B8AS02 (UniProt);NIAS_FLcDNA=J033099H18;Expression=AK102623;TENOR=Os04t0280300-01;KEGG=Os04t0280300-01
Chr04	irgsp1_rep	five_prime_UTR	11888753	11888852	.	-	.	Parent=Os04t0280300-01
Chr04	irgsp1_rep	CDS	11888156	11888752	.	-	0	Parent=Os04t0280300-01
Chr04	irgsp1_rep	three_prime_UTR	11887808	11888155	.	-	.	Parent=Os04t0280300-01
Chr04	irgsp1_rep	mRNA	11894682	11896959	.	+	.	ID=Os04t0280500-00;Name=Os04t0280500-00;Locus_id=Os04g0280500;Note=Similar to Non-S-locus F-box-like protein 2011 (Fragment).;Transcript_evidence=EU941018 (DDBJ);ORF_evidence=A0ELV0 (UniProt);TENOR=Os04t0280500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	11894682	11894984	.	+	0	Parent=Os04t0280500-00
Chr04	irgsp1_rep	CDS	11896807	11896959	.	+	0	Parent=Os04t0280500-00
Chr04	irgsp1_rep	mRNA	11911069	11918055	.	-	.	ID=Os04t0280600-01;Name=Os04t0280600-01;Locus_id=Os04g0280600;RAP-DB Gene Symbol Synonym(s)=AM20;RAP-DB Gene Name Synonym(s)=ARBUSCULAR MYCORRHIZA20%2C ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 20;CGSNL Gene Symbol=AM20;CGSNL Gene Name=ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 20;Oryzabase Gene Symbol Synonym(s)=AM20;Note=Arbuscular mycorrhizal (AM)-specific marker%2C Similar to AB-hydrolase associated lipase region;Transcript_evidence=Inferred from literature;ORF_evidence=Q7X8S9;GO=Biological Process: lipid metabolic process (GO:0006629);InterPro=Alpha/Beta hydrolase fold (IPR029058),Partial AB-hydrolase lipase domain (IPR006693);Manual Curation=May 15%2C 2017;Literature_PMID=19033527;Oryzabase=8188;TENOR=Os04t0280600-01
Chr04	irgsp1_rep	CDS	11917846	11918055	.	-	0	Parent=Os04t0280600-01
Chr04	irgsp1_rep	CDS	11917381	11917503	.	-	0	Parent=Os04t0280600-01
Chr04	irgsp1_rep	CDS	11916980	11917120	.	-	0	Parent=Os04t0280600-01
Chr04	irgsp1_rep	CDS	11916331	11916450	.	-	0	Parent=Os04t0280600-01
Chr04	irgsp1_rep	CDS	11913411	11913524	.	-	0	Parent=Os04t0280600-01
Chr04	irgsp1_rep	CDS	11912891	11913037	.	-	0	Parent=Os04t0280600-01
Chr04	irgsp1_rep	CDS	11912739	11912779	.	-	0	Parent=Os04t0280600-01
Chr04	irgsp1_rep	CDS	11912107	11912186	.	-	1	Parent=Os04t0280600-01
Chr04	irgsp1_rep	CDS	11911911	11912006	.	-	2	Parent=Os04t0280600-01
Chr04	irgsp1_rep	CDS	11911069	11911403	.	-	2	Parent=Os04t0280600-01
Chr04	irgsp1_rep	mRNA	11911133	11917506	.	+	.	ID=Os04t0280650-00;Name=Os04t0280650-00;Locus_id=Os04g0280650;Note=Hypothetical protein.;Transcript_evidence=BT016872 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0280650-00
Chr04	irgsp1_rep	five_prime_UTR	11911133	11911387	.	+	.	Parent=Os04t0280650-00
Chr04	irgsp1_rep	five_prime_UTR	11911898	11911956	.	+	.	Parent=Os04t0280650-00
Chr04	irgsp1_rep	CDS	11911957	11912001	.	+	0	Parent=Os04t0280650-00
Chr04	irgsp1_rep	CDS	11912762	11913040	.	+	0	Parent=Os04t0280650-00
Chr04	irgsp1_rep	CDS	11913415	11913429	.	+	0	Parent=Os04t0280650-00
Chr04	irgsp1_rep	three_prime_UTR	11913430	11913528	.	+	.	Parent=Os04t0280650-00
Chr04	irgsp1_rep	three_prime_UTR	11916984	11917147	.	+	.	Parent=Os04t0280650-00
Chr04	irgsp1_rep	three_prime_UTR	11917390	11917506	.	+	.	Parent=Os04t0280650-00
Chr04	irgsp1_rep	mRNA	11934116	11936662	.	-	.	ID=Os04t0280700-01;Name=Os04t0280700-01;Locus_id=Os04g0280700;Note=Conserved hypothetical protein.;Transcript_evidence=AK064967 (DDBJ%2C Best hit);ORF_evidence=NP_001060228.1 (RefSeq);NIAS_FLcDNA=J013001B04;TENOR=Os04t0280700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	11936599	11936662	.	-	.	Parent=Os04t0280700-01
Chr04	irgsp1_rep	CDS	11936040	11936598	.	-	0	Parent=Os04t0280700-01
Chr04	irgsp1_rep	CDS	11935696	11935727	.	-	2	Parent=Os04t0280700-01
Chr04	irgsp1_rep	three_prime_UTR	11935647	11935695	.	-	.	Parent=Os04t0280700-01
Chr04	irgsp1_rep	three_prime_UTR	11934116	11934508	.	-	.	Parent=Os04t0280700-01
Chr04	irgsp1_rep	mRNA	11938393	11938439	.	-	.	ID=Os04t0281300-00;Name=Os04t0281300-00;Locus_id=Os04g0281300;Note=Non-protein coding transcript.;Transcript_evidence=EU945226 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0281300-00
Chr04	irgsp1_rep	exon	11938393	11938439	.	-	.	Parent=Os04t0281300-00
Chr04	irgsp1_rep	mRNA	12026975	12029408	.	+	.	ID=Os04t0281900-01;Name=Os04t0281900-01;Locus_id=Os04g0281900;Note=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup domain containing protein.;Transcript_evidence=AK061149 (DDBJ%2C Best hit);ORF_evidence=Q01MG8 (UniProt);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup (IPR006459),Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);NIAS_FLcDNA=006-208-E03;Expression=AK061149;TENOR=Os04t0281900-01;KEGG=Os04t0281900-01
Chr04	irgsp1_rep	five_prime_UTR	12026975	12027064	.	+	.	Parent=Os04t0281900-01
Chr04	irgsp1_rep	CDS	12027065	12027300	.	+	0	Parent=Os04t0281900-01
Chr04	irgsp1_rep	CDS	12027395	12027512	.	+	1	Parent=Os04t0281900-01
Chr04	irgsp1_rep	CDS	12028876	12029151	.	+	0	Parent=Os04t0281900-01
Chr04	irgsp1_rep	three_prime_UTR	12029152	12029408	.	+	.	Parent=Os04t0281900-01
Chr04	irgsp1_rep	mRNA	12027019	12029441	.	+	.	ID=Os04t0281900-02;Name=Os04t0281900-02;Locus_id=Os04g0281900;Note=Similar to OSIGBa0131F24.1 protein.;Transcript_evidence=AK060229 (DDBJ%2C Best hit);ORF_evidence=Q01MG8 (UniProt);NIAS_FLcDNA=001-002-H01;Expression=AK060229;TENOR=Os04t0281900-02;KEGG=Os04t0281900-02
Chr04	irgsp1_rep	five_prime_UTR	12027019	12027064	.	+	.	Parent=Os04t0281900-02
Chr04	irgsp1_rep	CDS	12027065	12027261	.	+	0	Parent=Os04t0281900-02
Chr04	irgsp1_rep	CDS	12029170	12029263	.	+	1	Parent=Os04t0281900-02
Chr04	irgsp1_rep	three_prime_UTR	12029264	12029441	.	+	.	Parent=Os04t0281900-02
Chr04	irgsp1_rep	mRNA	12032983	12037970	.	-	.	ID=Os04t0282000-01;Name=Os04t0282000-01;Locus_id=Os04g0282000;Note=Hypothetical conserved gene.;Transcript_evidence=AK103681 (DDBJ%2C Best hit);ORF_evidence=B9FW77 (UniProt);NIAS_FLcDNA=J033136E02;Expression=AK103681;TENOR=Os04t0282000-01;KEGG=Os04t0282000-01
Chr04	irgsp1_rep	five_prime_UTR	12037544	12037970	.	-	.	Parent=Os04t0282000-01
Chr04	irgsp1_rep	five_prime_UTR	12035120	12035715	.	-	.	Parent=Os04t0282000-01
Chr04	irgsp1_rep	CDS	12034970	12035119	.	-	0	Parent=Os04t0282000-01
Chr04	irgsp1_rep	three_prime_UTR	12034914	12034969	.	-	.	Parent=Os04t0282000-01
Chr04	irgsp1_rep	three_prime_UTR	12032983	12034574	.	-	.	Parent=Os04t0282000-01
Chr04	irgsp1_rep	mRNA	12047171	12048694	.	+	.	ID=Os04t0282200-01;Name=Os04t0282200-01;Locus_id=Os04g0282200;Note=Protein of unknown function DUF1685 family protein.;Transcript_evidence=AK105498 (DDBJ%2C Best hit);ORF_evidence=Q01MG5 (UniProt);InterPro=Protein of unknown function DUF1685 (IPR012881);NIAS_FLcDNA=001-127-D01;TENOR=Os04t0282200-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	12047171	12047208	.	+	.	Parent=Os04t0282200-01
Chr04	irgsp1_rep	CDS	12047209	12047842	.	+	0	Parent=Os04t0282200-01
Chr04	irgsp1_rep	CDS	12047968	12048047	.	+	2	Parent=Os04t0282200-01
Chr04	irgsp1_rep	three_prime_UTR	12048048	12048694	.	+	.	Parent=Os04t0282200-01
Chr04	irgsp1_rep	mRNA	12062977	12063828	.	-	.	ID=Os04t0282400-01;Name=Os04t0282400-01;Locus_id=Os04g0282400;RAP-DB Gene Symbol Synonym(s)=OsFPFL4;RAP-DB Gene Name Synonym(s)=FPF1-like protein 4%2C flowering-promoting factor 1-like protein 4;CGSNL Gene Symbol=FPFL4;CGSNL Gene Name=FPF1-LIKE PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OsFPFL4;Oryzabase Gene Name Synonym(s)=FPF1-like protein 4%2C FPF1-like 4%2C flowering-promoting factor 1-like 4;Note=Homologue of Arabidopsis flowering-promoting factor 1%2C AtFPF1%2C Modulation of root and flower development%2C Control of auxin accumulation%2C Modulation of ROS homeostasis;Transcript_evidence=AK120187;ORF_evidence=Q0JEF5;NIAS_FLcDNA=J013034O10;Manual Curation=January 10%2C 2020;Literature_PMID=31912314;Oryzabase=23447;Expression=AK120187;TENOR=Os04t0282400-01;KEGG=Os04t0282400-01
Chr04	irgsp1_rep	five_prime_UTR	12063744	12063828	.	-	.	Parent=Os04t0282400-01
Chr04	irgsp1_rep	CDS	12063387	12063743	.	-	0	Parent=Os04t0282400-01
Chr04	irgsp1_rep	three_prime_UTR	12062977	12063386	.	-	.	Parent=Os04t0282400-01
Chr04	irgsp1_rep	mRNA	12120043	12120317	.	+	.	ID=Os04t0283001-00;Name=Os04t0283001-00;Locus_id=Os04g0283001;Note=Non-protein coding transcript.;Transcript_evidence=CT835046 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os04t0283001-00
Chr04	irgsp1_rep	exon	12120043	12120317	.	+	.	Parent=Os04t0283001-00
Chr04	irgsp1_rep	mRNA	12197063	12197899	.	+	.	ID=Os04t0283600-00;Name=Os04t0283600-00;Locus_id=Os04g0283600;Oryzabase Gene Symbol Synonym(s)=OsSTA118;Note=Similar to OSIGBa0097I11.4 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01LX9 (UniProt);InterPro=FAS1 domain (IPR000782);Oryzabase=19408;TENOR=Os04t0283600-00;KEGG=Os04t0283600-00
Chr04	irgsp1_rep	CDS	12197063	12197899	.	+	0	Parent=Os04t0283600-00
Chr04	irgsp1_rep	mRNA	12211882	12213339	.	+	.	ID=Os04t0283800-01;Name=Os04t0283800-01;Locus_id=Os04g0283800;Note=Octicosapeptide/Phox/Bem1p domain containing protein.;Transcript_evidence=AK109869 (DDBJ%2C Best hit);ORF_evidence=Q01LX8 (UniProt);NIAS_FLcDNA=002-149-A08;Expression=AK109869;TENOR=Os04t0283800-01;KEGG=Os04t0283800-01
Chr04	irgsp1_rep	five_prime_UTR	12211882	12211932	.	+	.	Parent=Os04t0283800-01
Chr04	irgsp1_rep	CDS	12211933	12213216	.	+	0	Parent=Os04t0283800-01
Chr04	irgsp1_rep	three_prime_UTR	12213217	12213339	.	+	.	Parent=Os04t0283800-01
Chr04	irgsp1_rep	mRNA	12213694	12217730	.	-	.	ID=Os04t0283900-01;Name=Os04t0283900-01;Locus_id=Os04g0283900;Note=Similar to OSIGBa0097I11.6 protein.;Transcript_evidence=AK065012 (DDBJ%2C Best hit);ORF_evidence=Q01LX7 (UniProt);NIAS_FLcDNA=J013001F04;TENOR=Os04t0283900-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	12217628	12217730	.	-	.	Parent=Os04t0283900-01
Chr04	irgsp1_rep	CDS	12217259	12217627	.	-	0	Parent=Os04t0283900-01
Chr04	irgsp1_rep	three_prime_UTR	12217140	12217258	.	-	.	Parent=Os04t0283900-01
Chr04	irgsp1_rep	three_prime_UTR	12216906	12217003	.	-	.	Parent=Os04t0283900-01
Chr04	irgsp1_rep	three_prime_UTR	12213694	12214114	.	-	.	Parent=Os04t0283900-01
Chr04	irgsp1_rep	mRNA	12220887	12228769	.	-	.	ID=Os04t0284100-01;Name=Os04t0284100-01;Locus_id=Os04g0284100;Note=Similar to OSIGBa0145C02.4 protein.;Transcript_evidence=AK100448 (DDBJ%2C Best hit);ORF_evidence=Q01LX6 (UniProt);NIAS_FLcDNA=J023090M19;Expression=AK100448;TENOR=Os04t0284100-01;KEGG=Os04t0284100-01
Chr04	irgsp1_rep	five_prime_UTR	12228557	12228769	.	-	.	Parent=Os04t0284100-01
Chr04	irgsp1_rep	five_prime_UTR	12227394	12227435	.	-	.	Parent=Os04t0284100-01
Chr04	irgsp1_rep	CDS	12227391	12227393	.	-	0	Parent=Os04t0284100-01
Chr04	irgsp1_rep	CDS	12227235	12227283	.	-	0	Parent=Os04t0284100-01
Chr04	irgsp1_rep	CDS	12227075	12227123	.	-	2	Parent=Os04t0284100-01
Chr04	irgsp1_rep	CDS	12226646	12226716	.	-	1	Parent=Os04t0284100-01
Chr04	irgsp1_rep	CDS	12223919	12223977	.	-	2	Parent=Os04t0284100-01
Chr04	irgsp1_rep	CDS	12223720	12223815	.	-	0	Parent=Os04t0284100-01
Chr04	irgsp1_rep	three_prime_UTR	12223712	12223719	.	-	.	Parent=Os04t0284100-01
Chr04	irgsp1_rep	three_prime_UTR	12223177	12223234	.	-	.	Parent=Os04t0284100-01
Chr04	irgsp1_rep	three_prime_UTR	12222802	12222938	.	-	.	Parent=Os04t0284100-01
Chr04	irgsp1_rep	three_prime_UTR	12222665	12222721	.	-	.	Parent=Os04t0284100-01
Chr04	irgsp1_rep	three_prime_UTR	12221709	12221806	.	-	.	Parent=Os04t0284100-01
Chr04	irgsp1_rep	three_prime_UTR	12221306	12221505	.	-	.	Parent=Os04t0284100-01
Chr04	irgsp1_rep	three_prime_UTR	12220887	12221207	.	-	.	Parent=Os04t0284100-01
Chr04	irgsp1_rep	mRNA	12242926	12248267	.	+	.	ID=Os04t0284500-01;Name=Os04t0284500-01;Locus_id=Os04g0284500;Note=Transcriptional coactivator SAGA-type complex%2C Ada1/Tada1 domain containing protein.;Transcript_evidence=AK064376 (DDBJ%2C Best hit);ORF_evidence=F2DTK4 (UniProt);GO=Cellular Component: SAGA-type complex (GO:0070461);InterPro=Transcriptional coactivator SAGA-type complex%2C Ada1/Tada1 (IPR024738);NIAS_FLcDNA=002-108-D07;TENOR=Os04t0284500-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	12242926	12243246	.	+	.	Parent=Os04t0284500-01
Chr04	irgsp1_rep	five_prime_UTR	12246467	12246594	.	+	.	Parent=Os04t0284500-01
Chr04	irgsp1_rep	CDS	12246595	12247206	.	+	0	Parent=Os04t0284500-01
Chr04	irgsp1_rep	three_prime_UTR	12247207	12247647	.	+	.	Parent=Os04t0284500-01
Chr04	irgsp1_rep	three_prime_UTR	12248042	12248267	.	+	.	Parent=Os04t0284500-01
Chr04	irgsp1_rep	mRNA	12242958	12251271	.	+	.	ID=Os04t0284500-02;Name=Os04t0284500-02;Locus_id=Os04g0284500;Note=Transcriptional coactivator SAGA-type complex%2C Ada1/Tada1 domain containing protein.;Transcript_evidence=AK119323 (DDBJ%2C Best hit);ORF_evidence=F2DTK4 (UniProt);GO=Cellular Component: SAGA-type complex (GO:0070461);InterPro=Transcriptional coactivator SAGA-type complex%2C Ada1/Tada1 (IPR024738);NIAS_FLcDNA=001-131-A07;TENOR=Os04t0284500-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	12242958	12243246	.	+	.	Parent=Os04t0284500-02
Chr04	irgsp1_rep	five_prime_UTR	12246467	12246594	.	+	.	Parent=Os04t0284500-02
Chr04	irgsp1_rep	CDS	12246595	12247206	.	+	0	Parent=Os04t0284500-02
Chr04	irgsp1_rep	three_prime_UTR	12247207	12248981	.	+	.	Parent=Os04t0284500-02
Chr04	irgsp1_rep	three_prime_UTR	12250137	12250664	.	+	.	Parent=Os04t0284500-02
Chr04	irgsp1_rep	three_prime_UTR	12250768	12250894	.	+	.	Parent=Os04t0284500-02
Chr04	irgsp1_rep	three_prime_UTR	12250986	12251271	.	+	.	Parent=Os04t0284500-02
Chr04	irgsp1_rep	mRNA	12242936	12248072	.	-	.	ID=Os04t0284550-00;Name=Os04t0284550-00;Locus_id=Os04g0284550;Note=Hypothetical protein.;Transcript_evidence=tplb0046c24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0284550-00
Chr04	irgsp1_rep	five_prime_UTR	12246462	12248072	.	-	.	Parent=Os04t0284550-00
Chr04	irgsp1_rep	five_prime_UTR	12243163	12243199	.	-	.	Parent=Os04t0284550-00
Chr04	irgsp1_rep	CDS	12242936	12243162	.	-	0	Parent=Os04t0284550-00
Chr04	irgsp1_rep	mRNA	12252529	12258695	.	-	.	ID=Os04t0284600-01;Name=Os04t0284600-01;Locus_id=Os04g0284600;Note=Similar to TAT-binding protein 1 (Fragment).;Transcript_evidence=AK071386 (DDBJ%2C Best hit);ORF_evidence=Q01LX5 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);NIAS_FLcDNA=J023092N19;Expression=AK071386;TENOR=Os04t0284600-01;KEGG=Os04t0284600-01
Chr04	irgsp1_rep	five_prime_UTR	12258574	12258695	.	-	.	Parent=Os04t0284600-01
Chr04	irgsp1_rep	CDS	12258490	12258573	.	-	0	Parent=Os04t0284600-01
Chr04	irgsp1_rep	CDS	12258245	12258334	.	-	0	Parent=Os04t0284600-01
Chr04	irgsp1_rep	CDS	12257630	12257701	.	-	0	Parent=Os04t0284600-01
Chr04	irgsp1_rep	CDS	12256246	12256365	.	-	0	Parent=Os04t0284600-01
Chr04	irgsp1_rep	CDS	12255816	12256007	.	-	0	Parent=Os04t0284600-01
Chr04	irgsp1_rep	CDS	12255385	12255503	.	-	0	Parent=Os04t0284600-01
Chr04	irgsp1_rep	CDS	12254803	12254881	.	-	1	Parent=Os04t0284600-01
Chr04	irgsp1_rep	CDS	12253802	12253921	.	-	0	Parent=Os04t0284600-01
Chr04	irgsp1_rep	CDS	12253549	12253689	.	-	0	Parent=Os04t0284600-01
Chr04	irgsp1_rep	CDS	12252814	12252870	.	-	0	Parent=Os04t0284600-01
Chr04	irgsp1_rep	three_prime_UTR	12252529	12252813	.	-	.	Parent=Os04t0284600-01
Chr04	irgsp1_rep	mRNA	12279219	12281637	.	-	.	ID=Os04t0284900-01;Name=Os04t0284900-01;Locus_id=Os04g0284900;Note=Similar to OSIGBa0145C02.7 protein.;Transcript_evidence=AK072677 (DDBJ%2C Best hit);ORF_evidence=Q01LX3 (UniProt);InterPro=Calmodulin-binding protein%2C plant (IPR012417);NIAS_FLcDNA=J023136A15;TENOR=Os04t0284900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	12281552	12281637	.	-	.	Parent=Os04t0284900-01
Chr04	irgsp1_rep	five_prime_UTR	12280632	12280680	.	-	.	Parent=Os04t0284900-01
Chr04	irgsp1_rep	CDS	12279453	12280631	.	-	0	Parent=Os04t0284900-01
Chr04	irgsp1_rep	three_prime_UTR	12279219	12279452	.	-	.	Parent=Os04t0284900-01
Chr04	irgsp1_rep	mRNA	12318484	12322114	.	+	.	ID=Os04t0285601-01;Name=Os04t0285601-01;Locus_id=Os04g0285601;Note=Hypothetical gene.;Transcript_evidence=AK288757 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090066H20;TENOR=Os04t0285601-01;KEGG=Os04t0285601-01
Chr04	irgsp1_rep	five_prime_UTR	12318484	12319935	.	+	.	Parent=Os04t0285601-01
Chr04	irgsp1_rep	CDS	12319936	12320229	.	+	0	Parent=Os04t0285601-01
Chr04	irgsp1_rep	three_prime_UTR	12320230	12322114	.	+	.	Parent=Os04t0285601-01
Chr04	irgsp1_rep	mRNA	12364431	12369638	.	+	.	ID=Os04t0286300-01;Name=Os04t0286300-01;Locus_id=Os04g0286300;CGSNL Gene Symbol=WAK33;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 33;Oryzabase Gene Symbol Synonym(s)=OsWAK33;Note=Conserved hypothetical protein.;Transcript_evidence=AK067467 (DDBJ%2C Best hit);ORF_evidence=A3ARY8 (UniProt);NIAS_FLcDNA=J013104F01;Oryzabase=6934;TENOR=Os04t0286300-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	12364431	12364465	.	+	.	Parent=Os04t0286300-01
Chr04	irgsp1_rep	CDS	12364466	12365351	.	+	0	Parent=Os04t0286300-01
Chr04	irgsp1_rep	CDS	12366304	12366770	.	+	2	Parent=Os04t0286300-01
Chr04	irgsp1_rep	three_prime_UTR	12366771	12366781	.	+	.	Parent=Os04t0286300-01
Chr04	irgsp1_rep	three_prime_UTR	12367995	12368147	.	+	.	Parent=Os04t0286300-01
Chr04	irgsp1_rep	three_prime_UTR	12368223	12369638	.	+	.	Parent=Os04t0286300-01
Chr04	irgsp1_rep	mRNA	12364462	12368622	.	-	.	ID=Os04t0286333-01;Name=Os04t0286333-01;Locus_id=Os04g0286333;Note=Hypothetical gene.;Transcript_evidence=AK287516 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J053038M02;TENOR=Os04t0286333-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	12368223	12368622	.	-	.	Parent=Os04t0286333-01
Chr04	irgsp1_rep	five_prime_UTR	12367995	12368147	.	-	.	Parent=Os04t0286333-01
Chr04	irgsp1_rep	five_prime_UTR	12366304	12366781	.	-	.	Parent=Os04t0286333-01
Chr04	irgsp1_rep	five_prime_UTR	12365333	12365351	.	-	.	Parent=Os04t0286333-01
Chr04	irgsp1_rep	CDS	12365120	12365332	.	-	0	Parent=Os04t0286333-01
Chr04	irgsp1_rep	three_prime_UTR	12364462	12365119	.	-	.	Parent=Os04t0286333-01
Chr04	irgsp1_rep	mRNA	12379130	12379726	.	+	.	ID=Os04t0286366-00;Name=Os04t0286366-00;Locus_id=Os04g0286366;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FE94 (UniProt);GO=Molecular Function: heat shock protein binding (GO:0031072);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623);TENOR=Os04t0286366-00;KEGG=Os04t0286366-00
Chr04	irgsp1_rep	CDS	12379130	12379726	.	+	0	Parent=Os04t0286366-00
Chr04	irgsp1_rep	mRNA	12382067	12382868	.	+	.	ID=Os04t0286400-01;Name=Os04t0286400-01;Locus_id=Os04g0286400;Note=Conserved hypothetical protein.;Transcript_evidence=AK062974 (DDBJ%2C Best hit);ORF_evidence=B8ARX7 (UniProt);NIAS_FLcDNA=001-109-E08;Expression=AK062974;TENOR=Os04t0286400-01;KEGG=Os04t0286400-01
Chr04	irgsp1_rep	five_prime_UTR	12382067	12382286	.	+	.	Parent=Os04t0286400-01
Chr04	irgsp1_rep	CDS	12382287	12382332	.	+	0	Parent=Os04t0286400-01
Chr04	irgsp1_rep	CDS	12382419	12382639	.	+	2	Parent=Os04t0286400-01
Chr04	irgsp1_rep	three_prime_UTR	12382640	12382868	.	+	.	Parent=Os04t0286400-01
Chr04	irgsp1_rep	mRNA	12385421	12387320	.	+	.	ID=Os04t0286500-01;Name=Os04t0286500-01;Locus_id=Os04g0286500;CGSNL Gene Symbol=MSL18;CGSNL Gene Name=MYB/SANT-LIKE 18;Oryzabase Gene Symbol Synonym(s)=OsMSL18;Oryzabase Gene Name Synonym(s)=Myb/SANT-LIKE 18;Note=Homeodomain-like containing protein.;Transcript_evidence=AK064584 (DDBJ%2C Best hit);ORF_evidence=B8BCY2 (UniProt);InterPro=MYB-like (IPR017877);NIAS_FLcDNA=002-112-F05;Oryzabase=22958;Expression=AK064584;TENOR=Os04t0286500-01;KEGG=Os04t0286500-01
Chr04	irgsp1_rep	five_prime_UTR	12385421	12385880	.	+	.	Parent=Os04t0286500-01
Chr04	irgsp1_rep	CDS	12385881	12387134	.	+	0	Parent=Os04t0286500-01
Chr04	irgsp1_rep	three_prime_UTR	12387135	12387320	.	+	.	Parent=Os04t0286500-01
Chr04	irgsp1_rep	mRNA	12425564	12426962	.	+	.	ID=Os04t0287400-01;Name=Os04t0287400-01;Locus_id=Os04g0287400;RAP-DB Gene Symbol Synonym(s)=WRKY51%2C OsWRKY51;RAP-DB Gene Name Synonym(s)=WRKY GENE 51%2C Rice WRKY gene51;CGSNL Gene Symbol=WRKY51;CGSNL Gene Name=WRKY GENE 51;Oryzabase Gene Symbol Synonym(s)=OsWRKY51;Oryzabase Gene Name Synonym(s)=Rice WRKY gene51;Note=WRKY transcription factor%2C Positive regulator in defense response%2C Negative regulator in GA signaling;Transcript_evidence=AK100954,HQ858832;ORF_evidence=Q0JEE2;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Zn-cluster domain (IPR018872),WRKY domain (IPR003657);NIAS_FLcDNA=J023139N16;Manual Curation=July 26%2C 2016;Literature_PMID=27300023,16623886,Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6303;Expression=AK100954;TENOR=Os04t0287400-01;KEGG=Os04t0287400-01
Chr04	irgsp1_rep	five_prime_UTR	12425564	12425646	.	+	.	Parent=Os04t0287400-01
Chr04	irgsp1_rep	CDS	12425647	12426320	.	+	0	Parent=Os04t0287400-01
Chr04	irgsp1_rep	CDS	12426389	12426514	.	+	1	Parent=Os04t0287400-01
Chr04	irgsp1_rep	CDS	12426599	12426779	.	+	1	Parent=Os04t0287400-01
Chr04	irgsp1_rep	three_prime_UTR	12426780	12426962	.	+	.	Parent=Os04t0287400-01
Chr04	irgsp1_rep	mRNA	12504047	12505046	.	-	.	ID=Os04t0288100-00;Name=Os04t0288100-00;Locus_id=Os04g0288100;Note=Similar to Auxin-binding protein ABP20.;Transcript_evidence=EU958158 (DDBJ);ORF_evidence=B6U6C5 (UniProt);GO=Cellular Component: apoplast (GO:0048046),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),Germin%2C manganese binding site (IPR019780);TENOR=Os04t0288100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	12504740	12505046	.	-	0	Parent=Os04t0288100-00
Chr04	irgsp1_rep	CDS	12504047	12504486	.	-	2	Parent=Os04t0288100-00
Chr04	irgsp1_rep	mRNA	12534295	12539647	.	-	.	ID=Os04t0288500-01;Name=Os04t0288500-01;Locus_id=Os04g0288500;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK062593 (DDBJ%2C Best hit);ORF_evidence=Q7XL08 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Legume lectin%2C beta chain%2C Mn/Ca-binding site (IPR019825);NIAS_FLcDNA=001-100-H04;TENOR=Os04t0288500-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	12539608	12539647	.	-	.	Parent=Os04t0288500-01
Chr04	irgsp1_rep	CDS	12538175	12539607	.	-	0	Parent=Os04t0288500-01
Chr04	irgsp1_rep	CDS	12534419	12535226	.	-	1	Parent=Os04t0288500-01
Chr04	irgsp1_rep	three_prime_UTR	12534295	12534418	.	-	.	Parent=Os04t0288500-01
Chr04	irgsp1_rep	mRNA	12535024	12538311	.	+	.	ID=Os04t0288550-00;Name=Os04t0288550-00;Locus_id=Os04g0288550;Note=Non-protein coding transcript.;Transcript_evidence=EU951884 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0288550-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	exon	12535024	12535206	.	+	.	Parent=Os04t0288550-00
Chr04	irgsp1_rep	exon	12538132	12538311	.	+	.	Parent=Os04t0288550-00
Chr04	irgsp1_rep	mRNA	12586386	12586916	.	+	.	ID=Os04t0289500-00;Name=Os04t0289500-00;Locus_id=Os04g0289500;Note=Allergen V5/Tpx-1-related domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XW56 (UniProt);InterPro=Allergen V5/Tpx-1-related (IPR001283),CAP domain (IPR014044);TENOR=Os04t0289500-00
Chr04	irgsp1_rep	CDS	12586386	12586916	.	+	0	Parent=Os04t0289500-00
Chr04	irgsp1_rep	mRNA	12588570	12589289	.	+	.	ID=Os04t0289600-01;Name=Os04t0289600-01;Locus_id=Os04g0289600;Oryzabase Gene Name Synonym(s)=Allergen V5/Tpx-1 related family protein;Note=Allergen V5/Tpx-1 related family protein.;Transcript_evidence=AK111140 (DDBJ%2C Best hit);ORF_evidence=A2XRH7 (UniProt);InterPro=Allergen V5/Tpx-1-related (IPR001283),CAP domain (IPR014044);NIAS_FLcDNA=002-176-E01;Oryzabase=22030;Expression=AK111140;TENOR=Os04t0289600-01;KEGG=Os04t0289600-01
Chr04	irgsp1_rep	five_prime_UTR	12588570	12588596	.	+	.	Parent=Os04t0289600-01
Chr04	irgsp1_rep	CDS	12588597	12589169	.	+	0	Parent=Os04t0289600-01
Chr04	irgsp1_rep	three_prime_UTR	12589170	12589289	.	+	.	Parent=Os04t0289600-01
Chr04	irgsp1_rep	mRNA	12591530	12592096	.	+	.	ID=Os04t0289700-00;Name=Os04t0289700-00;Locus_id=Os04g0289700;Note=Allergen V5/Tpx-1-related domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XRR1 (UniProt);InterPro=Allergen V5/Tpx-1-related (IPR001283),CAP domain (IPR014044);TENOR=Os04t0289700-00
Chr04	irgsp1_rep	CDS	12591530	12592096	.	+	0	Parent=Os04t0289700-00
Chr04	irgsp1_rep	mRNA	12597675	12602600	.	+	.	ID=Os04t0289800-01;Name=Os04t0289800-01;Locus_id=Os04g0289800;CGSNL Gene Symbol=DLN109;CGSNL Gene Name=DLN REPRESSOR 109;Oryzabase Gene Symbol Synonym(s)=OsDLN109;Oryzabase Gene Name Synonym(s)=DLN repressor 109%2C DLN motif protein 109;Note=Hypothetical conserved gene.;Transcript_evidence=AK242034 (DDBJ%2C Best hit);ORF_evidence=Q7XW58 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: histone binding (GO:0042393);InterPro=Zinc finger%2C RING-type (IPR001841),SRA-YDG (IPR003105),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957),Zinc finger%2C PHD-type%2C conserved site (IPR019786);NIAS_FLcDNA=J075117J18;Oryzabase=23191;TENOR=Os04t0289800-01;KEGG=Os04t0289800-01 (EC:6.3.2.19)
Chr04	irgsp1_rep	five_prime_UTR	12597675	12597818	.	+	.	Parent=Os04t0289800-01
Chr04	irgsp1_rep	CDS	12597819	12598286	.	+	0	Parent=Os04t0289800-01
Chr04	irgsp1_rep	CDS	12599588	12600120	.	+	0	Parent=Os04t0289800-01
Chr04	irgsp1_rep	CDS	12600209	12600338	.	+	1	Parent=Os04t0289800-01
Chr04	irgsp1_rep	three_prime_UTR	12600339	12600819	.	+	.	Parent=Os04t0289800-01
Chr04	irgsp1_rep	three_prime_UTR	12600975	12601232	.	+	.	Parent=Os04t0289800-01
Chr04	irgsp1_rep	three_prime_UTR	12601308	12601757	.	+	.	Parent=Os04t0289800-01
Chr04	irgsp1_rep	three_prime_UTR	12601867	12602600	.	+	.	Parent=Os04t0289800-01
Chr04	irgsp1_rep	mRNA	12609523	12612253	.	+	.	ID=Os04t0290000-01;Name=Os04t0290000-01;Locus_id=Os04g0290000;Note=Hypothetical conserved gene.;Transcript_evidence=AK242471 (DDBJ%2C Best hit);ORF_evidence=B8AI50 (UniProt);NIAS_FLcDNA=J080303A07;TENOR=Os04t0290000-01;KEGG=Os04t0290000-01
Chr04	irgsp1_rep	five_prime_UTR	12609523	12609641	.	+	.	Parent=Os04t0290000-01
Chr04	irgsp1_rep	CDS	12609642	12610157	.	+	0	Parent=Os04t0290000-01
Chr04	irgsp1_rep	CDS	12611352	12611369	.	+	0	Parent=Os04t0290000-01
Chr04	irgsp1_rep	three_prime_UTR	12611370	12611533	.	+	.	Parent=Os04t0290000-01
Chr04	irgsp1_rep	three_prime_UTR	12611877	12612253	.	+	.	Parent=Os04t0290000-01
Chr04	irgsp1_rep	mRNA	12627398	12628669	.	+	.	ID=Os04t0290400-01;Name=Os04t0290400-01;Locus_id=Os04g0290400;Note=Conserved hypothetical protein.;Transcript_evidence=AK063164 (DDBJ%2C Best hit);ORF_evidence=Q852N3 (UniProt);NIAS_FLcDNA=001-100-H02;Expression=AK063164;TENOR=Os04t0290400-01;KEGG=Os04t0290400-01
Chr04	irgsp1_rep	five_prime_UTR	12627398	12627738	.	+	.	Parent=Os04t0290400-01
Chr04	irgsp1_rep	CDS	12627739	12627999	.	+	0	Parent=Os04t0290400-01
Chr04	irgsp1_rep	three_prime_UTR	12628000	12628669	.	+	.	Parent=Os04t0290400-01
Chr04	irgsp1_rep	mRNA	12628440	12630654	.	-	.	ID=Os04t0290450-01;Name=Os04t0290450-01;Locus_id=Os04g0290450;Note=Hypothetical protein.;Transcript_evidence=AK107207 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-125-B10;Expression=AK107207;TENOR=Os04t0290450-01;KEGG=Os04t0290450-01
Chr04	irgsp1_rep	five_prime_UTR	12630527	12630654	.	-	.	Parent=Os04t0290450-01
Chr04	irgsp1_rep	CDS	12630281	12630526	.	-	0	Parent=Os04t0290450-01
Chr04	irgsp1_rep	three_prime_UTR	12628440	12630280	.	-	.	Parent=Os04t0290450-01
Chr04	irgsp1_rep	mRNA	12646034	12649199	.	-	.	ID=Os04t0290750-00;Name=Os04t0290750-00;Locus_id=Os04g0290750;Note=Hypothetical gene.;Transcript_evidence=BT086202 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0290750-00
Chr04	irgsp1_rep	five_prime_UTR	12649053	12649199	.	-	.	Parent=Os04t0290750-00
Chr04	irgsp1_rep	five_prime_UTR	12647762	12647805	.	-	.	Parent=Os04t0290750-00
Chr04	irgsp1_rep	five_prime_UTR	12646748	12647032	.	-	.	Parent=Os04t0290750-00
Chr04	irgsp1_rep	five_prime_UTR	12646299	12646642	.	-	.	Parent=Os04t0290750-00
Chr04	irgsp1_rep	CDS	12646034	12646298	.	-	0	Parent=Os04t0290750-00
Chr04	irgsp1_rep	mRNA	12645868	12651648	.	+	.	ID=Os04t0290800-00;Name=Os04t0290800-00;Locus_id=Os04g0290800;CGSNL Gene Symbol=RUS1;CGSNL Gene Name=ROOT UV-B SENSITIVE 1;Oryzabase Gene Symbol Synonym(s)=OsRUS1;Note=Similar to predicted protein.;Transcript_evidence=AK250329 (DDBJ);ORF_evidence=NP_190175.2 (RefSeq);InterPro=Protein of unknown function DUF647 (IPR006968);Oryzabase=21447;TENOR=Os04t0290800-00;KEGG=Os04t0290800-00
Chr04	irgsp1_rep	five_prime_UTR	12645868	12645948	.	+	.	Parent=Os04t0290800-00
Chr04	irgsp1_rep	CDS	12645949	12646644	.	+	0	Parent=Os04t0290800-00
Chr04	irgsp1_rep	CDS	12646750	12647025	.	+	0	Parent=Os04t0290800-00
Chr04	irgsp1_rep	CDS	12647754	12647810	.	+	0	Parent=Os04t0290800-00
Chr04	irgsp1_rep	CDS	12649060	12649258	.	+	0	Parent=Os04t0290800-00
Chr04	irgsp1_rep	CDS	12650362	12650468	.	+	2	Parent=Os04t0290800-00
Chr04	irgsp1_rep	CDS	12650681	12650854	.	+	0	Parent=Os04t0290800-00
Chr04	irgsp1_rep	CDS	12650939	12651211	.	+	0	Parent=Os04t0290800-00
Chr04	irgsp1_rep	three_prime_UTR	12651212	12651293	.	+	.	Parent=Os04t0290800-00
Chr04	irgsp1_rep	three_prime_UTR	12651349	12651648	.	+	.	Parent=Os04t0290800-00
Chr04	irgsp1_rep	mRNA	12661871	12662937	.	+	.	ID=Os04t0291000-01;Name=Os04t0291000-01;Locus_id=Os04g0291000;Note=Similar to predicted protein.;Transcript_evidence=AK287743 (DDBJ%2C Best hit);ORF_evidence=B9FEA4 (UniProt);NIAS_FLcDNA=J065148H12;TENOR=Os04t0291000-01;KEGG=Os04t0291000-01
Chr04	irgsp1_rep	five_prime_UTR	12661871	12661902	.	+	.	Parent=Os04t0291000-01
Chr04	irgsp1_rep	CDS	12661903	12662068	.	+	0	Parent=Os04t0291000-01
Chr04	irgsp1_rep	CDS	12662565	12662593	.	+	2	Parent=Os04t0291000-01
Chr04	irgsp1_rep	three_prime_UTR	12662594	12662937	.	+	.	Parent=Os04t0291000-01
Chr04	irgsp1_rep	mRNA	12669831	12673930	.	+	.	ID=Os04t0291100-01;Name=Os04t0291100-01;Locus_id=Os04g0291100;Note=Similar to Short-chain dehydrogenase Tic32.;Transcript_evidence=AK063968 (DDBJ%2C Best hit);ORF_evidence=B3TM13 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-124-B01;Expression=AK063968;TENOR=Os04t0291100-01;KEGG=Os04t0291100-01
Chr04	irgsp1_rep	five_prime_UTR	12669831	12669873	.	+	.	Parent=Os04t0291100-01
Chr04	irgsp1_rep	CDS	12669874	12669981	.	+	0	Parent=Os04t0291100-01
Chr04	irgsp1_rep	CDS	12670444	12670676	.	+	0	Parent=Os04t0291100-01
Chr04	irgsp1_rep	CDS	12671087	12671166	.	+	1	Parent=Os04t0291100-01
Chr04	irgsp1_rep	CDS	12671410	12671563	.	+	2	Parent=Os04t0291100-01
Chr04	irgsp1_rep	CDS	12671694	12671772	.	+	1	Parent=Os04t0291100-01
Chr04	irgsp1_rep	CDS	12672179	12672263	.	+	0	Parent=Os04t0291100-01
Chr04	irgsp1_rep	CDS	12672774	12672820	.	+	2	Parent=Os04t0291100-01
Chr04	irgsp1_rep	CDS	12673473	12673631	.	+	0	Parent=Os04t0291100-01
Chr04	irgsp1_rep	three_prime_UTR	12673632	12673930	.	+	.	Parent=Os04t0291100-01
Chr04	irgsp1_rep	mRNA	12669831	12673930	.	+	.	ID=Os04t0291100-02;Name=Os04t0291100-02;Locus_id=Os04g0291100;Note=Hypothetical conserved gene.;Transcript_evidence=AK121726 (DDBJ%2C Best hit);ORF_evidence=B9FEA6 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033082C04;Expression=AK121726;TENOR=Os04t0291100-02;KEGG=Os04t0291100-02
Chr04	irgsp1_rep	five_prime_UTR	12669831	12669873	.	+	.	Parent=Os04t0291100-02
Chr04	irgsp1_rep	CDS	12669874	12669981	.	+	0	Parent=Os04t0291100-02
Chr04	irgsp1_rep	CDS	12670444	12670680	.	+	0	Parent=Os04t0291100-02
Chr04	irgsp1_rep	three_prime_UTR	12670681	12673930	.	+	.	Parent=Os04t0291100-02
Chr04	irgsp1_rep	mRNA	12719050	12725101	.	-	.	ID=Os04t0291900-00;Name=Os04t0291900-00;Locus_id=Os04g0291900;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8ARZ2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009),Malectin (IPR021720);TENOR=Os04t0291900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	12724905	12725101	.	-	0	Parent=Os04t0291900-00
Chr04	irgsp1_rep	CDS	12724754	12724825	.	-	1	Parent=Os04t0291900-00
Chr04	irgsp1_rep	CDS	12724346	12724417	.	-	1	Parent=Os04t0291900-00
Chr04	irgsp1_rep	CDS	12722593	12722664	.	-	1	Parent=Os04t0291900-00
Chr04	irgsp1_rep	CDS	12722411	12722482	.	-	1	Parent=Os04t0291900-00
Chr04	irgsp1_rep	CDS	12722263	12722334	.	-	1	Parent=Os04t0291900-00
Chr04	irgsp1_rep	CDS	12721045	12721110	.	-	1	Parent=Os04t0291900-00
Chr04	irgsp1_rep	CDS	12720104	12720455	.	-	1	Parent=Os04t0291900-00
Chr04	irgsp1_rep	CDS	12719050	12719283	.	-	0	Parent=Os04t0291900-00
Chr04	irgsp1_rep	mRNA	12718050	12718337	.	-	.	ID=Os04t0292150-00;Name=Os04t0292150-00;Locus_id=Os04g0292150;Note=Similar to SHR5-receptor-like kinase (Fragment).;Transcript_evidence=ab initio prediction;ORF_evidence=Q4PLL4 (UniProt);TENOR=Os04t0292150-00
Chr04	irgsp1_rep	CDS	12718050	12718337	.	-	0	Parent=Os04t0292150-00
Chr04	irgsp1_rep	mRNA	12718431	12718912	.	+	.	ID=Os04t0292451-00;Name=Os04t0292451-00;Locus_id=Os04g0292451;Note=Non-protein coding transcript.;Transcript_evidence=EU949024 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0292451-00
Chr04	irgsp1_rep	exon	12718431	12718912	.	+	.	Parent=Os04t0292451-00
Chr04	irgsp1_rep	mRNA	12836598	12837213	.	+	.	ID=Os04t0293100-01;Name=Os04t0293100-01;Locus_id=Os04g0293100;Note=Hypothetical protein.;Transcript_evidence=AK062525 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=001-104-D09;TENOR=Os04t0293100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	12836598	12836868	.	+	.	Parent=Os04t0293100-01
Chr04	irgsp1_rep	CDS	12836869	12837123	.	+	0	Parent=Os04t0293100-01
Chr04	irgsp1_rep	three_prime_UTR	12837124	12837213	.	+	.	Parent=Os04t0293100-01
Chr04	irgsp1_rep	mRNA	12838399	12839208	.	+	.	ID=Os04t0293300-01;Name=Os04t0293300-01;Locus_id=Os04g0293300;Note=Similar to Tropinone reductase-I (EC 1.1.1.206) (TR-I) (Tropine dehydrogenase).;Transcript_evidence=AK111082 (DDBJ%2C Best hit);ORF_evidence=Q01LV1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=002-175-F05;TENOR=Os04t0293300-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	12838399	12838443	.	+	.	Parent=Os04t0293300-01
Chr04	irgsp1_rep	CDS	12838444	12838529	.	+	0	Parent=Os04t0293300-01
Chr04	irgsp1_rep	CDS	12838809	12838956	.	+	1	Parent=Os04t0293300-01
Chr04	irgsp1_rep	three_prime_UTR	12838957	12839208	.	+	.	Parent=Os04t0293300-01
Chr04	irgsp1_rep	mRNA	12869488	12869990	.	+	.	ID=Os04t0293600-01;Name=Os04t0293600-01;Locus_id=Os04g0293600;Note=Hypothetical protein.;Transcript_evidence=AK063003 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-109-H08;Expression=AK063003;TENOR=Os04t0293600-01;KEGG=Os04t0293600-01
Chr04	irgsp1_rep	five_prime_UTR	12869488	12869573	.	+	.	Parent=Os04t0293600-01
Chr04	irgsp1_rep	CDS	12869574	12869858	.	+	0	Parent=Os04t0293600-01
Chr04	irgsp1_rep	three_prime_UTR	12869859	12869990	.	+	.	Parent=Os04t0293600-01
Chr04	irgsp1_rep	mRNA	12875227	12882818	.	+	.	ID=Os04t0293700-01;Name=Os04t0293700-01;Locus_id=Os04g0293700;Note=Transposase%2C Ptta/En/Spm%2C plant domain containing protein.;Transcript_evidence=AK106564 (DDBJ%2C Best hit);ORF_evidence=A2XRJ9 (UniProt);InterPro=Transposase%2C Ptta/En/Spm%2C plant (IPR004252);NIAS_FLcDNA=002-110-D02;Expression=AK106564;TENOR=Os04t0293700-01;KEGG=Os04t0293700-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	12875227	12875413	.	+	.	Parent=Os04t0293700-01
Chr04	irgsp1_rep	five_prime_UTR	12875502	12875632	.	+	.	Parent=Os04t0293700-01
Chr04	irgsp1_rep	five_prime_UTR	12880452	12880455	.	+	.	Parent=Os04t0293700-01
Chr04	irgsp1_rep	CDS	12880456	12880643	.	+	0	Parent=Os04t0293700-01
Chr04	irgsp1_rep	CDS	12880902	12881094	.	+	1	Parent=Os04t0293700-01
Chr04	irgsp1_rep	CDS	12881173	12881562	.	+	0	Parent=Os04t0293700-01
Chr04	irgsp1_rep	CDS	12881639	12881743	.	+	0	Parent=Os04t0293700-01
Chr04	irgsp1_rep	three_prime_UTR	12881744	12881749	.	+	.	Parent=Os04t0293700-01
Chr04	irgsp1_rep	three_prime_UTR	12881852	12882172	.	+	.	Parent=Os04t0293700-01
Chr04	irgsp1_rep	three_prime_UTR	12882245	12882301	.	+	.	Parent=Os04t0293700-01
Chr04	irgsp1_rep	three_prime_UTR	12882561	12882818	.	+	.	Parent=Os04t0293700-01
Chr04	irgsp1_rep	mRNA	12917941	12920012	.	-	.	ID=Os04t0294401-01;Name=Os04t0294401-01;Locus_id=Os04g0294401;Note=Hypothetical conserved gene.;Transcript_evidence=AK288264 (DDBJ%2C Best hit);ORF_evidence=B9FEB1 (UniProt);NIAS_FLcDNA=J090016E18;TENOR=Os04t0294401-01;KEGG=Os04t0294401-01
Chr04	irgsp1_rep	five_prime_UTR	12918604	12920012	.	-	.	Parent=Os04t0294401-01
Chr04	irgsp1_rep	CDS	12918259	12918603	.	-	0	Parent=Os04t0294401-01
Chr04	irgsp1_rep	three_prime_UTR	12917941	12918258	.	-	.	Parent=Os04t0294401-01
Chr04	irgsp1_rep	mRNA	12935280	12935697	.	-	.	ID=Os04t0294812-00;Name=Os04t0294812-00;Locus_id=Os04g0294812;Note=EF-hand-like domain domain containing protein.;Transcript_evidence=FP097437 (DDBJ);ORF_evidence=Q33AZ2 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand-like domain (IPR011992);TENOR=Os04t0294812-00
Chr04	irgsp1_rep	five_prime_UTR	12935505	12935697	.	-	.	Parent=Os04t0294812-00
Chr04	irgsp1_rep	CDS	12935280	12935504	.	-	0	Parent=Os04t0294812-00
Chr04	irgsp1_rep	mRNA	12953499	12954724	.	+	.	ID=Os04t0295000-01;Name=Os04t0295000-01;Locus_id=Os04g0295000;Note=Protein phosphatase inhibitor family protein.;Transcript_evidence=AK105141 (DDBJ%2C Best hit);ORF_evidence=NP_565720.1 (RefSeq);InterPro=Protein phosphatase inhibitor (IPR011107);NIAS_FLcDNA=001-103-A01;Expression=AK105141;TENOR=Os04t0295000-01;KEGG=Os04t0295000-01
Chr04	irgsp1_rep	five_prime_UTR	12953499	12953583	.	+	.	Parent=Os04t0295000-01
Chr04	irgsp1_rep	CDS	12953584	12953940	.	+	0	Parent=Os04t0295000-01
Chr04	irgsp1_rep	three_prime_UTR	12953941	12953958	.	+	.	Parent=Os04t0295000-01
Chr04	irgsp1_rep	three_prime_UTR	12954340	12954724	.	+	.	Parent=Os04t0295000-01
Chr04	irgsp1_rep	mRNA	12955765	12957248	.	-	.	ID=Os04t0295100-00;Name=Os04t0295100-00;Locus_id=Os04g0295100;Note=Similar to EMB1687 (EMBRYO DEFECTIVE 1687)%3B ribonuclease P/ ribonuclease.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_683274.1 (RefSeq);GO=Biological Process: tRNA processing (GO:0008033),Molecular Function: ribonuclease activity (GO:0004540);InterPro=Ribonuclease P/MRP protein subunit (IPR002759);TENOR=Os04t0295100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	12957074	12957248	.	-	0	Parent=Os04t0295100-00
Chr04	irgsp1_rep	CDS	12956821	12956985	.	-	2	Parent=Os04t0295100-00
Chr04	irgsp1_rep	CDS	12955765	12955913	.	-	2	Parent=Os04t0295100-00
Chr04	irgsp1_rep	mRNA	12956315	12961228	.	+	.	ID=Os04t0295200-01;Name=Os04t0295200-01;Locus_id=Os04g0295200;Note=Hypothetical protein.;Transcript_evidence=AK288816 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090072L11;TENOR=Os04t0295200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	12956315	12959345	.	+	.	Parent=Os04t0295200-01
Chr04	irgsp1_rep	CDS	12959346	12959708	.	+	0	Parent=Os04t0295200-01
Chr04	irgsp1_rep	three_prime_UTR	12959709	12961228	.	+	.	Parent=Os04t0295200-01
Chr04	irgsp1_rep	mRNA	12989808	12992730	.	+	.	ID=Os04t0295400-01;Name=Os04t0295400-01;Locus_id=Os04g0295400;Note=Hypothetical conserved gene.;Transcript_evidence=AK065384 (DDBJ%2C Best hit);ORF_evidence=B9FEB2 (UniProt);InterPro=Mannose-binding lectin (IPR001229);NIAS_FLcDNA=J013007M21;Expression=AK065384;TENOR=Os04t0295400-01;KEGG=Os04t0295400-01
Chr04	irgsp1_rep	five_prime_UTR	12989808	12989993	.	+	.	Parent=Os04t0295400-01
Chr04	irgsp1_rep	five_prime_UTR	12990087	12992291	.	+	.	Parent=Os04t0295400-01
Chr04	irgsp1_rep	CDS	12992292	12992585	.	+	0	Parent=Os04t0295400-01
Chr04	irgsp1_rep	three_prime_UTR	12992586	12992730	.	+	.	Parent=Os04t0295400-01
Chr04	irgsp1_rep	mRNA	12989866	12996145	.	+	.	ID=Os04t0295400-02;Name=Os04t0295400-02;Locus_id=Os04g0295400;Note=Mannose-binding lectin domain containing protein.;Transcript_evidence=AK067477 (DDBJ%2C Best hit);ORF_evidence=A2XRK9 (UniProt);InterPro=Mannose-binding lectin (IPR001229);NIAS_FLcDNA=J013107O17;Expression=AK067477;TENOR=Os04t0295400-02;KEGG=Os04t0295400-02
Chr04	irgsp1_rep	five_prime_UTR	12989866	12989990	.	+	.	Parent=Os04t0295400-02
Chr04	irgsp1_rep	CDS	12989991	12989993	.	+	0	Parent=Os04t0295400-02
Chr04	irgsp1_rep	CDS	12990087	12990287	.	+	0	Parent=Os04t0295400-02
Chr04	irgsp1_rep	CDS	12992337	12992585	.	+	0	Parent=Os04t0295400-02
Chr04	irgsp1_rep	three_prime_UTR	12992586	12996145	.	+	.	Parent=Os04t0295400-02
Chr04	irgsp1_rep	mRNA	12997753	12999822	.	-	.	ID=Os04t0295500-01;Name=Os04t0295500-01;Locus_id=Os04g0295500;Note=Conserved hypothetical protein.;Transcript_evidence=AK107143 (DDBJ%2C Best hit);ORF_evidence=A3AS31 (UniProt);NIAS_FLcDNA=002-124-D05;TENOR=Os04t0295500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	12999821	12999822	.	-	.	Parent=Os04t0295500-01
Chr04	irgsp1_rep	CDS	12998970	12999820	.	-	0	Parent=Os04t0295500-01
Chr04	irgsp1_rep	CDS	12998694	12998844	.	-	1	Parent=Os04t0295500-01
Chr04	irgsp1_rep	three_prime_UTR	12998550	12998693	.	-	.	Parent=Os04t0295500-01
Chr04	irgsp1_rep	three_prime_UTR	12997753	12998324	.	-	.	Parent=Os04t0295500-01
Chr04	irgsp1_rep	mRNA	13026516	13029118	.	+	.	ID=Os04t0295901-00;Name=Os04t0295901-00;Locus_id=Os04g0295901;Note=Hypothetical gene.;Transcript_evidence=AK070183 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;Expression=AK070183;TENOR=Os04t0295901-00;KEGG=Os04t0295901-00
Chr04	irgsp1_rep	five_prime_UTR	13026516	13026517	.	+	.	Parent=Os04t0295901-00
Chr04	irgsp1_rep	CDS	13026518	13026768	.	+	0	Parent=Os04t0295901-00
Chr04	irgsp1_rep	CDS	13026796	13026871	.	+	1	Parent=Os04t0295901-00
Chr04	irgsp1_rep	three_prime_UTR	13026872	13026948	.	+	.	Parent=Os04t0295901-00
Chr04	irgsp1_rep	three_prime_UTR	13026955	13027633	.	+	.	Parent=Os04t0295901-00
Chr04	irgsp1_rep	three_prime_UTR	13027650	13029118	.	+	.	Parent=Os04t0295901-00
Chr04	irgsp1_rep	mRNA	13056659	13057081	.	-	.	ID=Os04t0296034-00;Name=Os04t0296034-00;Locus_id=Os04g0296034;Oryzabase Gene Symbol Synonym(s)=OsSTA119;Note=Zinc finger%2C PMZ-type domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7X8F3 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527);Oryzabase=19409;TENOR=Os04t0296034-00
Chr04	irgsp1_rep	CDS	13056659	13057081	.	-	0	Parent=Os04t0296034-00
Chr04	irgsp1_rep	mRNA	13084292	13084564	.	-	.	ID=Os04t0296301-00;Name=Os04t0296301-00;Locus_id=Os04g0296301;Note=Conserved hypothetical protein.;Transcript_evidence=CT835051 (DDBJ%2C Best hit);ORF_evidence=Q6ZC76 (UniProt);TENOR=Os04t0296301-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	13084379	13084564	.	-	0	Parent=Os04t0296301-00
Chr04	irgsp1_rep	three_prime_UTR	13084292	13084378	.	-	.	Parent=Os04t0296301-00
Chr04	irgsp1_rep	mRNA	13084975	13089002	.	-	.	ID=Os04t0296700-01;Name=Os04t0296700-01;Locus_id=Os04g0296700;Note=Similar to cDNA clone:006-306-G03%2C full insert sequence.;Transcript_evidence=AK069235 (DDBJ%2C Best hit);ORF_evidence=B7E6B9 (UniProt);NIAS_FLcDNA=J023010D04;Expression=AK069235;TENOR=Os04t0296700-01;KEGG=Os04t0296700-01
Chr04	irgsp1_rep	five_prime_UTR	13088546	13089002	.	-	.	Parent=Os04t0296700-01
Chr04	irgsp1_rep	five_prime_UTR	13088300	13088360	.	-	.	Parent=Os04t0296700-01
Chr04	irgsp1_rep	five_prime_UTR	13087236	13088184	.	-	.	Parent=Os04t0296700-01
Chr04	irgsp1_rep	CDS	13087101	13087235	.	-	0	Parent=Os04t0296700-01
Chr04	irgsp1_rep	three_prime_UTR	13084975	13087100	.	-	.	Parent=Os04t0296700-01
Chr04	irgsp1_rep	mRNA	13086291	13088918	.	-	.	ID=Os04t0296700-02;Name=Os04t0296700-02;Locus_id=Os04g0296700;Note=Hypothetical conserved gene.;Transcript_evidence=AK061424 (DDBJ%2C Best hit);ORF_evidence=A2XRL4 (UniProt);NIAS_FLcDNA=006-306-G03;Expression=AK061424;TENOR=Os04t0296700-02;KEGG=Os04t0296700-02
Chr04	irgsp1_rep	five_prime_UTR	13088546	13088918	.	-	.	Parent=Os04t0296700-02
Chr04	irgsp1_rep	five_prime_UTR	13088307	13088371	.	-	.	Parent=Os04t0296700-02
Chr04	irgsp1_rep	CDS	13088300	13088306	.	-	0	Parent=Os04t0296700-02
Chr04	irgsp1_rep	CDS	13088060	13088184	.	-	2	Parent=Os04t0296700-02
Chr04	irgsp1_rep	three_prime_UTR	13087953	13088059	.	-	.	Parent=Os04t0296700-02
Chr04	irgsp1_rep	three_prime_UTR	13087121	13087208	.	-	.	Parent=Os04t0296700-02
Chr04	irgsp1_rep	three_prime_UTR	13086291	13086579	.	-	.	Parent=Os04t0296700-02
Chr04	irgsp1_rep	mRNA	13086354	13088777	.	-	.	ID=Os04t0296700-03;Name=Os04t0296700-03;Locus_id=Os04g0296700;Note=Hypothetical conserved gene.;Transcript_evidence=AK069253 (DDBJ%2C Best hit);ORF_evidence=A2XRL4 (UniProt);NIAS_FLcDNA=J023014L03;Expression=AK069253;TENOR=Os04t0296700-03;KEGG=Os04t0296700-03
Chr04	irgsp1_rep	five_prime_UTR	13088546	13088777	.	-	.	Parent=Os04t0296700-03
Chr04	irgsp1_rep	five_prime_UTR	13088307	13088371	.	-	.	Parent=Os04t0296700-03
Chr04	irgsp1_rep	CDS	13088300	13088306	.	-	0	Parent=Os04t0296700-03
Chr04	irgsp1_rep	CDS	13088060	13088184	.	-	2	Parent=Os04t0296700-03
Chr04	irgsp1_rep	three_prime_UTR	13087953	13088059	.	-	.	Parent=Os04t0296700-03
Chr04	irgsp1_rep	three_prime_UTR	13087121	13087208	.	-	.	Parent=Os04t0296700-03
Chr04	irgsp1_rep	three_prime_UTR	13086354	13086579	.	-	.	Parent=Os04t0296700-03
Chr04	irgsp1_rep	mRNA	13154099	13155441	.	+	.	ID=Os04t0297800-01;Name=Os04t0297800-01;Locus_id=Os04g0297800;Note=Similar to OSIGBa0105O19.3 protein.;Transcript_evidence=AK243176 (DDBJ%2C Best hit);ORF_evidence=Q01MJ1 (UniProt);NIAS_FLcDNA=J100036K15;TENOR=Os04t0297800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	13154099	13154405	.	+	.	Parent=Os04t0297800-01
Chr04	irgsp1_rep	CDS	13154406	13154987	.	+	0	Parent=Os04t0297800-01
Chr04	irgsp1_rep	three_prime_UTR	13154988	13155441	.	+	.	Parent=Os04t0297800-01
Chr04	irgsp1_rep	mRNA	13173357	13174672	.	-	.	ID=Os04t0297933-00;Name=Os04t0297933-00;Locus_id=Os04g0297933;Note=Similar to kinase family protein.;Transcript_evidence=BT060544 (DDBJ);ORF_evidence=XP_002867309.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os04t0297933-00
Chr04	irgsp1_rep	five_prime_UTR	13174330	13174672	.	-	.	Parent=Os04t0297933-00
Chr04	irgsp1_rep	CDS	13174225	13174329	.	-	0	Parent=Os04t0297933-00
Chr04	irgsp1_rep	CDS	13173357	13173914	.	-	0	Parent=Os04t0297933-00
Chr04	irgsp1_rep	mRNA	13173972	13174745	.	+	.	ID=Os04t0298066-00;Name=Os04t0298066-00;Locus_id=Os04g0298066;Note=Conserved hypothetical protein.;Transcript_evidence=BT017189 (DDBJ);ORF_evidence=Q6Z6F6 (UniProt);TENOR=Os04t0298066-00
Chr04	irgsp1_rep	CDS	13173972	13174745	.	+	0	Parent=Os04t0298066-00
Chr04	irgsp1_rep	mRNA	13176753	13183064	.	-	.	ID=Os04t0298200-01;Name=Os04t0298200-01;Locus_id=Os04g0298200;CGSNL Gene Symbol=MTP7;CGSNL Gene Name=METAL TOLERANCE PROTEIN 7;Oryzabase Gene Symbol Synonym(s)=OsMTP7;Oryzabase Gene Name Synonym(s)=metal tolerance protein 7;Note=Similar to metal tolerance protein.;Transcript_evidence=AK241225 (DDBJ%2C Best hit);ORF_evidence=XP_002315378.1 (RefSeq);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: cation transmembrane transporter activity (GO:0008324);InterPro=Cation efflux protein (IPR002524);NIAS_FLcDNA=J065124K23;Oryzabase=13410;TENOR=Os04t0298200-01;KEGG=Os04t0298200-01
Chr04	irgsp1_rep	five_prime_UTR	13182925	13183064	.	-	.	Parent=Os04t0298200-01
Chr04	irgsp1_rep	CDS	13182594	13182924	.	-	0	Parent=Os04t0298200-01
Chr04	irgsp1_rep	CDS	13182431	13182488	.	-	2	Parent=Os04t0298200-01
Chr04	irgsp1_rep	CDS	13181616	13181748	.	-	1	Parent=Os04t0298200-01
Chr04	irgsp1_rep	CDS	13181473	13181528	.	-	0	Parent=Os04t0298200-01
Chr04	irgsp1_rep	CDS	13181062	13181176	.	-	1	Parent=Os04t0298200-01
Chr04	irgsp1_rep	CDS	13180887	13180944	.	-	0	Parent=Os04t0298200-01
Chr04	irgsp1_rep	CDS	13180692	13180810	.	-	2	Parent=Os04t0298200-01
Chr04	irgsp1_rep	CDS	13180370	13180489	.	-	0	Parent=Os04t0298200-01
Chr04	irgsp1_rep	CDS	13179027	13179128	.	-	0	Parent=Os04t0298200-01
Chr04	irgsp1_rep	CDS	13178876	13178948	.	-	0	Parent=Os04t0298200-01
Chr04	irgsp1_rep	CDS	13178198	13178265	.	-	2	Parent=Os04t0298200-01
Chr04	irgsp1_rep	CDS	13177144	13177204	.	-	0	Parent=Os04t0298200-01
Chr04	irgsp1_rep	CDS	13176943	13177067	.	-	2	Parent=Os04t0298200-01
Chr04	irgsp1_rep	three_prime_UTR	13176753	13176942	.	-	.	Parent=Os04t0298200-01
Chr04	irgsp1_rep	mRNA	13193351	13195231	.	-	.	ID=Os04t0298501-00;Name=Os04t0298501-00;Locus_id=Os04g0298501;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XVU8 (UniProt);TENOR=Os04t0298501-00
Chr04	irgsp1_rep	CDS	13193351	13195231	.	-	0	Parent=Os04t0298501-00
Chr04	irgsp1_rep	mRNA	13201958	13215932	.	+	.	ID=Os04t0298600-00;Name=Os04t0298600-00;Locus_id=Os04g0298600;Note=Uncharacterised protein family FPL domain containing protein.;Transcript_evidence=AK364717 (DDBJ);ORF_evidence=NP_001052403.1 (RefSeq);InterPro=Uncharacterised protein family FPL (IPR019155);TENOR=Os04t0298600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	13201958	13202214	.	+	0	Parent=Os04t0298600-00
Chr04	irgsp1_rep	CDS	13203419	13203470	.	+	1	Parent=Os04t0298600-00
Chr04	irgsp1_rep	CDS	13203551	13203627	.	+	0	Parent=Os04t0298600-00
Chr04	irgsp1_rep	CDS	13203701	13203834	.	+	1	Parent=Os04t0298600-00
Chr04	irgsp1_rep	CDS	13203945	13204041	.	+	2	Parent=Os04t0298600-00
Chr04	irgsp1_rep	CDS	13204123	13204180	.	+	1	Parent=Os04t0298600-00
Chr04	irgsp1_rep	CDS	13204604	13204712	.	+	0	Parent=Os04t0298600-00
Chr04	irgsp1_rep	CDS	13204809	13204932	.	+	2	Parent=Os04t0298600-00
Chr04	irgsp1_rep	CDS	13205154	13205340	.	+	1	Parent=Os04t0298600-00
Chr04	irgsp1_rep	CDS	13205434	13205744	.	+	0	Parent=Os04t0298600-00
Chr04	irgsp1_rep	CDS	13207438	13207526	.	+	1	Parent=Os04t0298600-00
Chr04	irgsp1_rep	CDS	13207613	13207683	.	+	2	Parent=Os04t0298600-00
Chr04	irgsp1_rep	CDS	13208126	13208236	.	+	0	Parent=Os04t0298600-00
Chr04	irgsp1_rep	CDS	13209301	13209363	.	+	0	Parent=Os04t0298600-00
Chr04	irgsp1_rep	CDS	13209947	13210084	.	+	0	Parent=Os04t0298600-00
Chr04	irgsp1_rep	CDS	13210618	13210723	.	+	0	Parent=Os04t0298600-00
Chr04	irgsp1_rep	CDS	13210819	13210890	.	+	2	Parent=Os04t0298600-00
Chr04	irgsp1_rep	CDS	13210998	13211044	.	+	2	Parent=Os04t0298600-00
Chr04	irgsp1_rep	CDS	13214679	13214838	.	+	0	Parent=Os04t0298600-00
Chr04	irgsp1_rep	CDS	13214955	13215121	.	+	2	Parent=Os04t0298600-00
Chr04	irgsp1_rep	CDS	13215257	13215586	.	+	0	Parent=Os04t0298600-00
Chr04	irgsp1_rep	three_prime_UTR	13215587	13215932	.	+	.	Parent=Os04t0298600-00
Chr04	irgsp1_rep	mRNA	13220130	13225103	.	-	.	ID=Os04t0298700-01;Name=Os04t0298700-01;Locus_id=Os04g0298700;Note=Clp%2C N-terminal domain containing protein.;Transcript_evidence=AK243332 (DDBJ%2C Best hit);ORF_evidence=Q7XVU6 (UniProt);GO=Biological Process: protein metabolic process (GO:0019538);InterPro=Clp%2C N-terminal (IPR004176);NIAS_FLcDNA=J100058K15;TENOR=Os04t0298700-01;KEGG=Os04t0298700-01
Chr04	irgsp1_rep	five_prime_UTR	13224965	13225103	.	-	.	Parent=Os04t0298700-01
Chr04	irgsp1_rep	CDS	13223514	13224964	.	-	0	Parent=Os04t0298700-01
Chr04	irgsp1_rep	CDS	13221884	13222145	.	-	1	Parent=Os04t0298700-01
Chr04	irgsp1_rep	CDS	13220281	13221762	.	-	0	Parent=Os04t0298700-01
Chr04	irgsp1_rep	three_prime_UTR	13220130	13220280	.	-	.	Parent=Os04t0298700-01
Chr04	irgsp1_rep	mRNA	13311048	13311809	.	-	.	ID=Os04t0299500-01;Name=Os04t0299500-01;Locus_id=Os04g0299500;Note=Conserved hypothetical protein.;Transcript_evidence=AK107909 (DDBJ%2C Best hit);ORF_evidence=B9FEB9 (UniProt);NIAS_FLcDNA=002-134-G04;Expression=AK107909;TENOR=Os04t0299500-01;KEGG=Os04t0299500-01
Chr04	irgsp1_rep	five_prime_UTR	13311716	13311809	.	-	.	Parent=Os04t0299500-01
Chr04	irgsp1_rep	CDS	13311416	13311715	.	-	0	Parent=Os04t0299500-01
Chr04	irgsp1_rep	three_prime_UTR	13311048	13311415	.	-	.	Parent=Os04t0299500-01
Chr04	irgsp1_rep	mRNA	13311205	13311971	.	+	.	ID=Os04t0300100-01;Name=Os04t0300100-01;Locus_id=Os04g0300100;Note=Conserved hypothetical protein.;Transcript_evidence=AK242234 (DDBJ%2C Best hit);ORF_evidence=NP_001173849.1 (RefSeq);NIAS_FLcDNA=J075177N13;TENOR=Os04t0300100-01;KEGG=Os04t0300100-01
Chr04	irgsp1_rep	five_prime_UTR	13311205	13311274	.	+	.	Parent=Os04t0300100-01
Chr04	irgsp1_rep	CDS	13311275	13311589	.	+	0	Parent=Os04t0300100-01
Chr04	irgsp1_rep	three_prime_UTR	13311590	13311971	.	+	.	Parent=Os04t0300100-01
Chr04	irgsp1_rep	mRNA	13399837	13401045	.	-	.	ID=Os04t0300600-00;Name=Os04t0300600-00;Locus_id=Os04g0300600;Oryzabase Gene Symbol Synonym(s)=OsbHLH007;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 007;Note=Hypothetical conserved gene.;Transcript_evidence=BT035971 (DDBJ);ORF_evidence=B6T7Q8 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);Oryzabase=15301;TENOR=Os04t0300600-00;KEGG=Os04t0300600-00
Chr04	irgsp1_rep	CDS	13400761	13401045	.	-	0	Parent=Os04t0300600-00
Chr04	irgsp1_rep	CDS	13400390	13400638	.	-	0	Parent=Os04t0300600-00
Chr04	irgsp1_rep	CDS	13399837	13400190	.	-	0	Parent=Os04t0300600-00
Chr04	irgsp1_rep	mRNA	13466455	13468869	.	-	.	ID=Os04t0301500-01;Name=Os04t0301500-01;Locus_id=Os04g0301500;RAP-DB Gene Symbol Synonym(s)=OsbHLH6%2C RERJ1;Oryzabase Gene Symbol Synonym(s)=OsbHLH006%2C bHLH006%2C OsbHLH6%2C bHLH6%2C RERJ1%2C OsRERJ1%2C bHLH35;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 006%2C Transcription factor bHLH35;Note=Basic helix-loop-helix transcription activator%2C Control of disease resistance%2C Regulation of salicylic acid (SA) and jasmonic acid (JA) signaling;Transcript_evidence=AK242210;ORF_evidence=Q0JEB7;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Helix-loop-helix DNA-binding domain superfamily (IPR036638),Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);NIAS_FLcDNA=J075170K16;Manual Curation=March 5%2C 2020;Literature_PMID=32129570;Oryzabase=10932;TENOR=Os04t0301500-01;KEGG=Os04t0301500-01;Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737)
Chr04	irgsp1_rep	five_prime_UTR	13468792	13468869	.	-	.	Parent=Os04t0301500-01
Chr04	irgsp1_rep	CDS	13468709	13468791	.	-	0	Parent=Os04t0301500-01
Chr04	irgsp1_rep	CDS	13468362	13468641	.	-	1	Parent=Os04t0301500-01
Chr04	irgsp1_rep	CDS	13467807	13468277	.	-	0	Parent=Os04t0301500-01
Chr04	irgsp1_rep	CDS	13466725	13466823	.	-	0	Parent=Os04t0301500-01
Chr04	irgsp1_rep	three_prime_UTR	13466455	13466724	.	-	.	Parent=Os04t0301500-01
Chr04	irgsp1_rep	mRNA	13493578	13498005	.	-	.	ID=Os04t0301700-01;Name=Os04t0301700-01;Locus_id=Os04g0301700;Note=Glycosyl transferase%2C family 14 protein.;Transcript_evidence=AK289206 (DDBJ%2C Best hit);ORF_evidence=Q01MD9 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: acetylglucosaminyltransferase activity (GO:0008375);InterPro=Glycosyl transferase%2C family 14 (IPR003406);NIAS_FLcDNA=J100053E09;TENOR=Os04t0301700-01;KEGG=Os04t0301700-01 (EC:2.4.2.26)
Chr04	irgsp1_rep	five_prime_UTR	13497906	13498005	.	-	.	Parent=Os04t0301700-01
Chr04	irgsp1_rep	CDS	13497383	13497905	.	-	0	Parent=Os04t0301700-01
Chr04	irgsp1_rep	CDS	13495466	13495541	.	-	2	Parent=Os04t0301700-01
Chr04	irgsp1_rep	CDS	13495173	13495288	.	-	1	Parent=Os04t0301700-01
Chr04	irgsp1_rep	CDS	13493955	13494445	.	-	2	Parent=Os04t0301700-01
Chr04	irgsp1_rep	three_prime_UTR	13493578	13493954	.	-	.	Parent=Os04t0301700-01
Chr04	irgsp1_rep	mRNA	13521426	13525685	.	+	.	ID=Os04t0302300-01;Name=Os04t0302300-01;Locus_id=Os04g0302300;Note=Hypothetical protein.;Transcript_evidence=AK072639 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023133I20;Expression=AK072639;TENOR=Os04t0302300-01;KEGG=Os04t0302300-01
Chr04	irgsp1_rep	five_prime_UTR	13521426	13522913	.	+	.	Parent=Os04t0302300-01
Chr04	irgsp1_rep	CDS	13522914	13523216	.	+	0	Parent=Os04t0302300-01
Chr04	irgsp1_rep	three_prime_UTR	13523217	13525685	.	+	.	Parent=Os04t0302300-01
Chr04	irgsp1_rep	mRNA	13526363	13531029	.	+	.	ID=Os04t0302400-01;Name=Os04t0302400-01;Locus_id=Os04g0302400;Note=Conserved hypothetical protein.;Transcript_evidence=AK069467 (DDBJ%2C Best hit);ORF_evidence=Q7XMC1 (UniProt);NIAS_FLcDNA=J023022E21;TENOR=Os04t0302400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	13526363	13526363	.	+	.	Parent=Os04t0302400-01
Chr04	irgsp1_rep	CDS	13526364	13526398	.	+	0	Parent=Os04t0302400-01
Chr04	irgsp1_rep	CDS	13526508	13526664	.	+	1	Parent=Os04t0302400-01
Chr04	irgsp1_rep	three_prime_UTR	13526665	13526712	.	+	.	Parent=Os04t0302400-01
Chr04	irgsp1_rep	three_prime_UTR	13529167	13529247	.	+	.	Parent=Os04t0302400-01
Chr04	irgsp1_rep	three_prime_UTR	13529334	13531029	.	+	.	Parent=Os04t0302400-01
Chr04	irgsp1_rep	mRNA	13550769	13551546	.	+	.	ID=Os04t0302900-01;Name=Os04t0302900-01;Locus_id=Os04g0302900;Note=Hypothetical gene.;Transcript_evidence=AK242761 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090052D13;TENOR=Os04t0302900-01;KEGG=Os04t0302900-01
Chr04	irgsp1_rep	five_prime_UTR	13550769	13550769	.	+	.	Parent=Os04t0302900-01
Chr04	irgsp1_rep	CDS	13550770	13551024	.	+	0	Parent=Os04t0302900-01
Chr04	irgsp1_rep	three_prime_UTR	13551025	13551170	.	+	.	Parent=Os04t0302900-01
Chr04	irgsp1_rep	three_prime_UTR	13551255	13551546	.	+	.	Parent=Os04t0302900-01
Chr04	irgsp1_rep	mRNA	13552826	13555333	.	-	.	ID=Os04t0303100-00;Name=Os04t0303100-00;Locus_id=Os04g0303100;Note=Similar to H0215E01.10 protein.;Transcript_evidence=AK369946 (DDBJ);ORF_evidence=Q01MD3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os04t0303100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	13552826	13555333	.	-	0	Parent=Os04t0303100-00
Chr04	irgsp1_rep	mRNA	13566810	13569752	.	+	.	ID=Os04t0303250-01;Name=Os04t0303250-01;Locus_id=Os04g0303250;Note=Hypothetical gene.;Transcript_evidence=AK241206 (DDBJ%2C Best hit);ORF_evidence=NP_001052408.1 (RefSeq);NIAS_FLcDNA=J065122H14;TENOR=Os04t0303250-01;KEGG=Os04t0303250-01
Chr04	irgsp1_rep	five_prime_UTR	13566810	13568466	.	+	.	Parent=Os04t0303250-01
Chr04	irgsp1_rep	CDS	13568467	13568781	.	+	0	Parent=Os04t0303250-01
Chr04	irgsp1_rep	three_prime_UTR	13568782	13569752	.	+	.	Parent=Os04t0303250-01
Chr04	irgsp1_rep	mRNA	13607957	13610358	.	+	.	ID=Os04t0303900-01;Name=Os04t0303900-01;Locus_id=Os04g0303900;Note=Nucleic acid-binding%2C OB-fold-like domain containing protein.;Transcript_evidence=AK108051 (DDBJ%2C Best hit);ORF_evidence=Q01LZ4 (UniProt);GO=Molecular Function: tRNA binding (GO:0000049);InterPro=tRNA-binding domain (IPR002547),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=002-137-H02;Expression=AK108051;TENOR=Os04t0303900-01;KEGG=Os04t0303900-01
Chr04	irgsp1_rep	five_prime_UTR	13607957	13608155	.	+	.	Parent=Os04t0303900-01
Chr04	irgsp1_rep	CDS	13608156	13608584	.	+	0	Parent=Os04t0303900-01
Chr04	irgsp1_rep	CDS	13609568	13609774	.	+	0	Parent=Os04t0303900-01
Chr04	irgsp1_rep	CDS	13610010	13610153	.	+	0	Parent=Os04t0303900-01
Chr04	irgsp1_rep	three_prime_UTR	13610154	13610358	.	+	.	Parent=Os04t0303900-01
Chr04	irgsp1_rep	mRNA	13610848	13616451	.	-	.	ID=Os04t0303950-01;Name=Os04t0303950-01;Locus_id=Os04g0303950;Note=Similar to OSIGBa0092O07.3 protein.;Transcript_evidence=AK241746 (DDBJ%2C Best hit);ORF_evidence=Q01LZ3 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Ribonuclease H-like (IPR012337),Exonuclease%2C RNase T/DNA polymerase III (IPR013520);NIAS_FLcDNA=J065202E13;TENOR=Os04t0303950-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	13616256	13616451	.	-	.	Parent=Os04t0303950-01
Chr04	irgsp1_rep	five_prime_UTR	13616051	13616085	.	-	.	Parent=Os04t0303950-01
Chr04	irgsp1_rep	CDS	13615924	13616050	.	-	0	Parent=Os04t0303950-01
Chr04	irgsp1_rep	CDS	13615044	13615154	.	-	2	Parent=Os04t0303950-01
Chr04	irgsp1_rep	CDS	13614282	13614472	.	-	2	Parent=Os04t0303950-01
Chr04	irgsp1_rep	three_prime_UTR	13613606	13614281	.	-	.	Parent=Os04t0303950-01
Chr04	irgsp1_rep	three_prime_UTR	13611566	13613535	.	-	.	Parent=Os04t0303950-01
Chr04	irgsp1_rep	three_prime_UTR	13610848	13611136	.	-	.	Parent=Os04t0303950-01
Chr04	irgsp1_rep	mRNA	13618731	13625051	.	-	.	ID=Os04t0304000-01;Name=Os04t0304000-01;Locus_id=Os04g0304000;Note=Similar to OSIGBa0092O07.4 protein.;Transcript_evidence=AK111276 (DDBJ%2C Best hit);ORF_evidence=Q01LZ2 (UniProt);InterPro=WASH complex%2C subunit CCDC53 (IPR019309);NIAS_FLcDNA=002-180-G08;Expression=AK111276;TENOR=Os04t0304000-01;KEGG=Os04t0304000-01
Chr04	irgsp1_rep	five_prime_UTR	13624934	13625051	.	-	.	Parent=Os04t0304000-01
Chr04	irgsp1_rep	CDS	13624769	13624933	.	-	0	Parent=Os04t0304000-01
Chr04	irgsp1_rep	CDS	13624533	13624615	.	-	0	Parent=Os04t0304000-01
Chr04	irgsp1_rep	CDS	13622804	13622965	.	-	1	Parent=Os04t0304000-01
Chr04	irgsp1_rep	CDS	13619344	13619359	.	-	1	Parent=Os04t0304000-01
Chr04	irgsp1_rep	three_prime_UTR	13619223	13619343	.	-	.	Parent=Os04t0304000-01
Chr04	irgsp1_rep	three_prime_UTR	13618731	13619075	.	-	.	Parent=Os04t0304000-01
Chr04	irgsp1_rep	mRNA	13641661	13654849	.	-	.	ID=Os04t0304200-01;Name=Os04t0304200-01;Locus_id=Os04g0304200;CGSNL Gene Symbol=NPH1B;CGSNL Gene Name=NONPHOTOTROPHIC HYPOCOTYL 1B;Oryzabase Gene Symbol Synonym(s)=PHOT2%2C OsPHOT2%2C OsNPH1b;Oryzabase Gene Name Synonym(s)=phototropin 2%2C nonphototrophic hypocotyl 1b;Note=Similar to Nonphototropic hypocotyl protein 1 (EC 2.7.1.37) (Phototropin).;Transcript_evidence=AK067128 (DDBJ%2C Best hit);ORF_evidence=Q01ME5 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: two-component sensor activity (GO:0000155),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=PAS (IPR000014),PAS-associated%2C C-terminal (IPR000700),Protein kinase%2C catalytic domain (IPR000719),PAC motif (IPR001610),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAS fold (IPR013767),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013098G17;Oryzabase=23423;TENOR=Os04t0304200-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	13654608	13654849	.	-	.	Parent=Os04t0304200-01
Chr04	irgsp1_rep	CDS	13654599	13654607	.	-	0	Parent=Os04t0304200-01
Chr04	irgsp1_rep	CDS	13653438	13653619	.	-	0	Parent=Os04t0304200-01
Chr04	irgsp1_rep	CDS	13653244	13653335	.	-	1	Parent=Os04t0304200-01
Chr04	irgsp1_rep	CDS	13652859	13653144	.	-	2	Parent=Os04t0304200-01
Chr04	irgsp1_rep	CDS	13652547	13652775	.	-	1	Parent=Os04t0304200-01
Chr04	irgsp1_rep	CDS	13652366	13652436	.	-	0	Parent=Os04t0304200-01
Chr04	irgsp1_rep	CDS	13649805	13649911	.	-	1	Parent=Os04t0304200-01
Chr04	irgsp1_rep	CDS	13649617	13649666	.	-	2	Parent=Os04t0304200-01
Chr04	irgsp1_rep	CDS	13649399	13649503	.	-	0	Parent=Os04t0304200-01
Chr04	irgsp1_rep	CDS	13648969	13649028	.	-	0	Parent=Os04t0304200-01
Chr04	irgsp1_rep	CDS	13648218	13648307	.	-	0	Parent=Os04t0304200-01
Chr04	irgsp1_rep	CDS	13647001	13647077	.	-	0	Parent=Os04t0304200-01
Chr04	irgsp1_rep	CDS	13646460	13646544	.	-	1	Parent=Os04t0304200-01
Chr04	irgsp1_rep	CDS	13646241	13646321	.	-	0	Parent=Os04t0304200-01
Chr04	irgsp1_rep	CDS	13645915	13646018	.	-	0	Parent=Os04t0304200-01
Chr04	irgsp1_rep	CDS	13644911	13644960	.	-	1	Parent=Os04t0304200-01
Chr04	irgsp1_rep	CDS	13644616	13644722	.	-	2	Parent=Os04t0304200-01
Chr04	irgsp1_rep	CDS	13644169	13644291	.	-	0	Parent=Os04t0304200-01
Chr04	irgsp1_rep	CDS	13643884	13643935	.	-	0	Parent=Os04t0304200-01
Chr04	irgsp1_rep	CDS	13642889	13643001	.	-	2	Parent=Os04t0304200-01
Chr04	irgsp1_rep	CDS	13642490	13642630	.	-	0	Parent=Os04t0304200-01
Chr04	irgsp1_rep	CDS	13642300	13642401	.	-	0	Parent=Os04t0304200-01
Chr04	irgsp1_rep	three_prime_UTR	13642299	13642299	.	-	.	Parent=Os04t0304200-01
Chr04	irgsp1_rep	three_prime_UTR	13641661	13641890	.	-	.	Parent=Os04t0304200-01
Chr04	irgsp1_rep	mRNA	13641668	13654637	.	-	.	ID=Os04t0304200-02;Name=Os04t0304200-02;Locus_id=Os04g0304200;RAP-DB Gene Symbol Synonym(s)=PHOT2%2C OsPHOT2%2C OsNPH1b;RAP-DB Gene Name Synonym(s)=phototropin 2%2C nonphototropic hypocotyl 1b;CGSNL Gene Symbol=NPH1B;CGSNL Gene Name=NONPHOTOTROPHIC HYPOCOTYL 1B;Oryzabase Gene Symbol Synonym(s)=PHOT2%2C OsPHOT2%2C OsNPH1b;Oryzabase Gene Name Synonym(s)=phototropin 2%2C nonphototrophic hypocotyl 1b;Note=Rice nonphototropic hypocotyl 1 (NPH1) homologue%2C Phototropin%2C Ion homeostasis%2C Salt stress response;Transcript_evidence=AB018443 (Norin 8);ORF_evidence=Q9ST27;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=PAS domain superfamily (IPR035965),Protein kinase-like domain superfamily (IPR011009),PAS domain (IPR000014),PAS-associated%2C C-terminal (IPR000700),Protein kinase domain (IPR000719),PAC motif (IPR001610),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);Manual Curation=April 24%2C 2020;Literature_PMID=31554292,12068117,10845454;Oryzabase=23423
Chr04	irgsp1_rep	five_prime_UTR	13654545	13654637	.	-	.	Parent=Os04t0304200-02
Chr04	irgsp1_rep	five_prime_UTR	13654037	13654112	.	-	.	Parent=Os04t0304200-02
Chr04	irgsp1_rep	CDS	13653438	13654036	.	-	0	Parent=Os04t0304200-02
Chr04	irgsp1_rep	CDS	13653244	13653335	.	-	1	Parent=Os04t0304200-02
Chr04	irgsp1_rep	CDS	13652859	13653144	.	-	2	Parent=Os04t0304200-02
Chr04	irgsp1_rep	CDS	13652547	13652775	.	-	1	Parent=Os04t0304200-02
Chr04	irgsp1_rep	CDS	13652366	13652436	.	-	0	Parent=Os04t0304200-02
Chr04	irgsp1_rep	CDS	13649805	13649911	.	-	1	Parent=Os04t0304200-02
Chr04	irgsp1_rep	CDS	13649617	13649666	.	-	2	Parent=Os04t0304200-02
Chr04	irgsp1_rep	CDS	13649399	13649503	.	-	0	Parent=Os04t0304200-02
Chr04	irgsp1_rep	CDS	13648969	13649028	.	-	0	Parent=Os04t0304200-02
Chr04	irgsp1_rep	CDS	13648218	13648307	.	-	0	Parent=Os04t0304200-02
Chr04	irgsp1_rep	CDS	13647001	13647077	.	-	0	Parent=Os04t0304200-02
Chr04	irgsp1_rep	CDS	13646460	13646544	.	-	1	Parent=Os04t0304200-02
Chr04	irgsp1_rep	CDS	13646241	13646321	.	-	0	Parent=Os04t0304200-02
Chr04	irgsp1_rep	CDS	13645915	13646018	.	-	0	Parent=Os04t0304200-02
Chr04	irgsp1_rep	CDS	13644911	13644960	.	-	1	Parent=Os04t0304200-02
Chr04	irgsp1_rep	CDS	13644616	13644722	.	-	2	Parent=Os04t0304200-02
Chr04	irgsp1_rep	CDS	13644169	13644291	.	-	0	Parent=Os04t0304200-02
Chr04	irgsp1_rep	CDS	13643884	13643935	.	-	0	Parent=Os04t0304200-02
Chr04	irgsp1_rep	CDS	13642889	13643001	.	-	2	Parent=Os04t0304200-02
Chr04	irgsp1_rep	CDS	13642490	13642630	.	-	0	Parent=Os04t0304200-02
Chr04	irgsp1_rep	CDS	13642300	13642401	.	-	0	Parent=Os04t0304200-02
Chr04	irgsp1_rep	three_prime_UTR	13642299	13642299	.	-	.	Parent=Os04t0304200-02
Chr04	irgsp1_rep	three_prime_UTR	13641668	13641885	.	-	.	Parent=Os04t0304200-02
Chr04	irgsp1_rep	mRNA	13653621	13653978	.	+	.	ID=Os04t0304250-00;Name=Os04t0304250-00;Locus_id=Os04g0304250;Note=Hypothetical protein.;Transcript_evidence=EU949907 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0304250-00
Chr04	irgsp1_rep	five_prime_UTR	13653621	13653622	.	+	.	Parent=Os04t0304250-00
Chr04	irgsp1_rep	CDS	13653623	13653978	.	+	0	Parent=Os04t0304250-00
Chr04	irgsp1_rep	mRNA	13672710	13675884	.	+	.	ID=Os04t0304400-01;Name=Os04t0304400-01;Locus_id=Os04g0304400;RAP-DB Gene Symbol Synonym(s)=OsMADS25;RAP-DB Gene Name Synonym(s)=MADS box gene25%2C MADS-box transcription factor 25;CGSNL Gene Symbol=MADS25;CGSNL Gene Name=MADS BOX GENE 25;Oryzabase Gene Symbol Synonym(s)=OsMADS25;Oryzabase Gene Name Synonym(s)=MADS box gene25%2C MADS-box transcription factor 25;Note=MADS-box transcription factor%2C Homologue of the AGL17-clade MADS-box genes%2C Regulation of root system development via auxin signalling;Transcript_evidence=AK102927;ORF_evidence=Q84NC5;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Biological Process: positive regulation of transcription by RNA polymerase II (GO:0045944),Molecular Function: RNA polymerase II regulatory region sequence-specific DNA binding (GO:0000977),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-binding transcription factor activity (GO:0003700),Molecular Function: protein dimerization activity (GO:0046983),Cellular Component: nucleus (GO:0005634);InterPro=Transcription factor%2C MADS-box superfamily (IPR036879),Transcription factor%2C MADS-box (IPR002100),MADS MEF2-like (IPR033896),Transcription factor%2C K-box (IPR002487);NIAS_FLcDNA=J033114E21;Manual Curation=August 1%2C 2018;Literature_PMID=29932274;Oryzabase=3091;Expression=AK102927;TENOR=Os04t0304400-01;KEGG=Os04t0304400-01
Chr04	irgsp1_rep	five_prime_UTR	13672710	13672892	.	+	.	Parent=Os04t0304400-01
Chr04	irgsp1_rep	CDS	13672893	13673074	.	+	0	Parent=Os04t0304400-01
Chr04	irgsp1_rep	CDS	13673667	13673745	.	+	1	Parent=Os04t0304400-01
Chr04	irgsp1_rep	CDS	13673960	13674021	.	+	0	Parent=Os04t0304400-01
Chr04	irgsp1_rep	CDS	13674411	13674510	.	+	1	Parent=Os04t0304400-01
Chr04	irgsp1_rep	CDS	13674600	13674641	.	+	0	Parent=Os04t0304400-01
Chr04	irgsp1_rep	CDS	13674774	13674857	.	+	0	Parent=Os04t0304400-01
Chr04	irgsp1_rep	CDS	13674959	13675093	.	+	0	Parent=Os04t0304400-01
Chr04	irgsp1_rep	three_prime_UTR	13675094	13675116	.	+	.	Parent=Os04t0304400-01
Chr04	irgsp1_rep	three_prime_UTR	13675673	13675884	.	+	.	Parent=Os04t0304400-01
Chr04	irgsp1_rep	mRNA	13690080	13690970	.	+	.	ID=Os04t0304750-00;Name=Os04t0304750-00;Locus_id=Os04g0304750;Note=Hypothetical protein.;Transcript_evidence=BT063109 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0304750-00
Chr04	irgsp1_rep	five_prime_UTR	13690080	13690080	.	+	.	Parent=Os04t0304750-00
Chr04	irgsp1_rep	CDS	13690081	13690970	.	+	0	Parent=Os04t0304750-00
Chr04	irgsp1_rep	mRNA	13771472	13773175	.	+	.	ID=Os04t0305700-01;Name=Os04t0305700-01;Locus_id=Os04g0305700;RAP-DB Gene Symbol Synonym(s)=OsUGT90A1;RAP-DB Gene Name Synonym(s)=UDP-glycosyltransferase 90A1;CGSNL Gene Symbol=UGT90A1;CGSNL Gene Name=UDP-GLYCOSYLTRANSFERASE 90A1;Oryzabase Gene Symbol Synonym(s)=OsUGT90A1;Oryzabase Gene Name Synonym(s)=UDP-glycosyltransferase enzyme UGT90A1%2C UDP-glycosyltransferase 90A1;Note=UDP-glycosyltransferase%2C Chilling tolerance;Transcript_evidence=AK105689;ORF_evidence=Q7XVP1;GO=Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213),UDP-glycosyltransferase family%2C conserved site (IPR035595);NIAS_FLcDNA=001-201-C02;Manual Curation=January 27%2C 2020;Literature_PMID=31974553;Oryzabase=23465;TENOR=Os04t0305700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=cytoplasm (GO:0005737) [mainly], plasma membrane (GO:0005886), tonoplast (GO:0009705)
Chr04	irgsp1_rep	five_prime_UTR	13771472	13771635	.	+	.	Parent=Os04t0305700-01
Chr04	irgsp1_rep	CDS	13771636	13773120	.	+	0	Parent=Os04t0305700-01
Chr04	irgsp1_rep	three_prime_UTR	13773121	13773175	.	+	.	Parent=Os04t0305700-01
Chr04	irgsp1_rep	mRNA	13771568	13773274	.	+	.	ID=Os04t0305700-02;Name=Os04t0305700-02;Locus_id=Os04g0305700;CGSNL Gene Symbol=UGT90A1;CGSNL Gene Name=UDP-GLYCOSYLTRANSFERASE 90A1;Oryzabase Gene Symbol Synonym(s)=OsUGT90A1;Oryzabase Gene Name Synonym(s)=UDP-glycosyltransferase enzyme UGT90A1%2C UDP-glycosyltransferase 90A1;Note=Similar to OSIGBa0096F13.5 protein.;Transcript_evidence=AK068128 (DDBJ%2C Best hit);ORF_evidence=Q01M05 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J013130C23;Oryzabase=23465;TENOR=Os04t0305700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	13771568	13771635	.	+	.	Parent=Os04t0305700-02
Chr04	irgsp1_rep	CDS	13771636	13773120	.	+	0	Parent=Os04t0305700-02
Chr04	irgsp1_rep	three_prime_UTR	13773121	13773274	.	+	.	Parent=Os04t0305700-02
Chr04	irgsp1_rep	mRNA	13796491	13797337	.	-	.	ID=Os04t0306300-00;Name=Os04t0306300-00;Locus_id=Os04g0306300;Note=Thaumatin%2C pathogenesis-related domain containing protein.;Transcript_evidence=BT035397 (DDBJ);ORF_evidence=Q5NAZ8 (UniProt);InterPro=Thaumatin%2C pathogenesis-related (IPR001938);TENOR=Os04t0306300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	13797315	13797337	.	-	.	Parent=Os04t0306300-00
Chr04	irgsp1_rep	CDS	13796974	13797314	.	-	0	Parent=Os04t0306300-00
Chr04	irgsp1_rep	CDS	13796566	13796839	.	-	1	Parent=Os04t0306300-00
Chr04	irgsp1_rep	three_prime_UTR	13796491	13796565	.	-	.	Parent=Os04t0306300-00
Chr04	irgsp1_rep	mRNA	13796695	13797309	.	+	.	ID=Os04t0306350-00;Name=Os04t0306350-00;Locus_id=Os04g0306350;Note=Non-protein coding transcript.;Transcript_evidence=EU967040 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0306350-00
Chr04	irgsp1_rep	exon	13796695	13796874	.	+	.	Parent=Os04t0306350-00
Chr04	irgsp1_rep	exon	13796993	13797309	.	+	.	Parent=Os04t0306350-00
Chr04	irgsp1_rep	mRNA	13802278	13803456	.	+	.	ID=Os04t0306400-01;Name=Os04t0306400-01;Locus_id=Os04g0306400;Oryzabase Gene Symbol Synonym(s)=OsRPI%2C RPI;Oryzabase Gene Name Synonym(s)=ribose-5-phosphate isomerase;Note=Ribose 5-phosphate isomerase family protein.;Transcript_evidence=AK103443 (DDBJ%2C Best hit);ORF_evidence=Q01M03 (UniProt);GO=Biological Process: pentose-phosphate shunt%2C non-oxidative branch (GO:0009052),Molecular Function: ribose-5-phosphate isomerase activity (GO:0004751);InterPro=Ribose 5-phosphate isomerase%2C type A (IPR004788),Ribose-5-phosphate isomerase%2C type A%2C subgroup (IPR020672);NIAS_FLcDNA=J033129E13;Oryzabase=11133;Expression=AK103443;TENOR=Os04t0306400-01;KEGG=Os04t0306400-01 (EC:5.3.1.6)
Chr04	irgsp1_rep	five_prime_UTR	13802278	13802385	.	+	.	Parent=Os04t0306400-01
Chr04	irgsp1_rep	CDS	13802386	13803213	.	+	0	Parent=Os04t0306400-01
Chr04	irgsp1_rep	three_prime_UTR	13803214	13803456	.	+	.	Parent=Os04t0306400-01
Chr04	irgsp1_rep	mRNA	13818100	13820521	.	-	.	ID=Os04t0306750-01;Name=Os04t0306750-01;Locus_id=Os04g0306750;Note=Similar to OSIGBa0096F13.8 protein.;Transcript_evidence=AK287518 (DDBJ%2C Best hit);ORF_evidence=Q01M02 (UniProt);NIAS_FLcDNA=J053039N13;TENOR=Os04t0306750-01;KEGG=Os04t0306750-01
Chr04	irgsp1_rep	five_prime_UTR	13820520	13820521	.	-	.	Parent=Os04t0306750-01
Chr04	irgsp1_rep	CDS	13819917	13820519	.	-	0	Parent=Os04t0306750-01
Chr04	irgsp1_rep	three_prime_UTR	13819882	13819916	.	-	.	Parent=Os04t0306750-01
Chr04	irgsp1_rep	three_prime_UTR	13818100	13818392	.	-	.	Parent=Os04t0306750-01
Chr04	irgsp1_rep	mRNA	13821696	13830207	.	-	.	ID=Os04t0306800-01;Name=Os04t0306800-01;Locus_id=Os04g0306800;Note=RNA recognition motif%2C RNP-1 domain containing protein.;Transcript_evidence=AK067583 (DDBJ%2C Best hit);ORF_evidence=Q01M01 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013112L20;Expression=AK067583;TENOR=Os04t0306800-01;KEGG=Os04t0306800-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	13830120	13830207	.	-	.	Parent=Os04t0306800-01
Chr04	irgsp1_rep	CDS	13829937	13830119	.	-	0	Parent=Os04t0306800-01
Chr04	irgsp1_rep	CDS	13828154	13828254	.	-	0	Parent=Os04t0306800-01
Chr04	irgsp1_rep	CDS	13827923	13828064	.	-	1	Parent=Os04t0306800-01
Chr04	irgsp1_rep	CDS	13827383	13827544	.	-	0	Parent=Os04t0306800-01
Chr04	irgsp1_rep	CDS	13827214	13827298	.	-	0	Parent=Os04t0306800-01
Chr04	irgsp1_rep	CDS	13825226	13825950	.	-	2	Parent=Os04t0306800-01
Chr04	irgsp1_rep	CDS	13825029	13825137	.	-	0	Parent=Os04t0306800-01
Chr04	irgsp1_rep	CDS	13823119	13823174	.	-	2	Parent=Os04t0306800-01
Chr04	irgsp1_rep	CDS	13822854	13822960	.	-	0	Parent=Os04t0306800-01
Chr04	irgsp1_rep	CDS	13822679	13822766	.	-	1	Parent=Os04t0306800-01
Chr04	irgsp1_rep	CDS	13822179	13822370	.	-	0	Parent=Os04t0306800-01
Chr04	irgsp1_rep	three_prime_UTR	13821696	13822178	.	-	.	Parent=Os04t0306800-01
Chr04	irgsp1_rep	mRNA	13821684	13827569	.	-	.	ID=Os04t0306800-02;Name=Os04t0306800-02;Locus_id=Os04g0306800;Note=Similar to OSIGBa0096F13.9 protein.;Transcript_evidence=AK058450 (DDBJ%2C Best hit);ORF_evidence=Q01M01 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-015-G12;Expression=AK058450;TENOR=Os04t0306800-02;KEGG=Os04t0306800-02;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	13827569	13827569	.	-	.	Parent=Os04t0306800-02
Chr04	irgsp1_rep	CDS	13827383	13827568	.	-	0	Parent=Os04t0306800-02
Chr04	irgsp1_rep	CDS	13827214	13827298	.	-	0	Parent=Os04t0306800-02
Chr04	irgsp1_rep	CDS	13825226	13825950	.	-	2	Parent=Os04t0306800-02
Chr04	irgsp1_rep	CDS	13825029	13825137	.	-	0	Parent=Os04t0306800-02
Chr04	irgsp1_rep	CDS	13823119	13823174	.	-	2	Parent=Os04t0306800-02
Chr04	irgsp1_rep	CDS	13822854	13822960	.	-	0	Parent=Os04t0306800-02
Chr04	irgsp1_rep	CDS	13822679	13822766	.	-	1	Parent=Os04t0306800-02
Chr04	irgsp1_rep	CDS	13822179	13822370	.	-	0	Parent=Os04t0306800-02
Chr04	irgsp1_rep	three_prime_UTR	13821684	13822178	.	-	.	Parent=Os04t0306800-02
Chr04	irgsp1_rep	mRNA	13834743	13841242	.	+	.	ID=Os04t0307200-01;Name=Os04t0307200-01;Locus_id=Os04g0307200;Oryzabase Gene Symbol Synonym(s)=OsDjC43%2C OsERdj2;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C43%2C ER-resident J-protein 2;Note=Similar to Cysteine string protein (CCCS1).;Transcript_evidence=AK070019 (DDBJ%2C Best hit);ORF_evidence=Q01MF9 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Sec63 domain (IPR004179);NIAS_FLcDNA=J023039B14;Oryzabase=12200;Expression=AK070019;TENOR=Os04t0307200-01;KEGG=Os04t0307200-01
Chr04	irgsp1_rep	five_prime_UTR	13834743	13834859	.	+	.	Parent=Os04t0307200-01
Chr04	irgsp1_rep	five_prime_UTR	13834956	13835017	.	+	.	Parent=Os04t0307200-01
Chr04	irgsp1_rep	CDS	13835018	13835203	.	+	0	Parent=Os04t0307200-01
Chr04	irgsp1_rep	CDS	13835341	13835436	.	+	0	Parent=Os04t0307200-01
Chr04	irgsp1_rep	CDS	13836147	13836267	.	+	0	Parent=Os04t0307200-01
Chr04	irgsp1_rep	CDS	13836364	13836470	.	+	2	Parent=Os04t0307200-01
Chr04	irgsp1_rep	CDS	13836579	13836796	.	+	0	Parent=Os04t0307200-01
Chr04	irgsp1_rep	CDS	13837849	13838026	.	+	1	Parent=Os04t0307200-01
Chr04	irgsp1_rep	CDS	13838122	13838241	.	+	0	Parent=Os04t0307200-01
Chr04	irgsp1_rep	CDS	13839231	13839317	.	+	0	Parent=Os04t0307200-01
Chr04	irgsp1_rep	CDS	13840031	13840141	.	+	0	Parent=Os04t0307200-01
Chr04	irgsp1_rep	CDS	13840248	13841069	.	+	0	Parent=Os04t0307200-01
Chr04	irgsp1_rep	three_prime_UTR	13841070	13841242	.	+	.	Parent=Os04t0307200-01
Chr04	irgsp1_rep	mRNA	13840273	13841195	.	+	.	ID=Os04t0307200-02;Name=Os04t0307200-02;Locus_id=Os04g0307200;Oryzabase Gene Symbol Synonym(s)=OsDjC43%2C OsERdj2;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C43%2C ER-resident J-protein 2;Note=Similar to OSIGBa0125J07.5 protein.;Transcript_evidence=AK059187 (DDBJ%2C Best hit);ORF_evidence=Q01MF9 (UniProt);InterPro=Sec63 domain (IPR004179);NIAS_FLcDNA=001-023-G11;Oryzabase=12200;Expression=AK059187;TENOR=Os04t0307200-02;KEGG=Os04t0307200-02
Chr04	irgsp1_rep	five_prime_UTR	13840273	13840274	.	+	.	Parent=Os04t0307200-02
Chr04	irgsp1_rep	CDS	13840275	13841069	.	+	0	Parent=Os04t0307200-02
Chr04	irgsp1_rep	three_prime_UTR	13841070	13841195	.	+	.	Parent=Os04t0307200-02
Chr04	irgsp1_rep	mRNA	13844867	13845997	.	+	.	ID=Os04t0307300-00;Name=Os04t0307300-00;Locus_id=Os04g0307300;Note=Similar to OSIGBa0125J07.6 protein.;Transcript_evidence=AK334710 (DDBJ);ORF_evidence=Q01MF8 (UniProt);TENOR=Os04t0307300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	13844867	13845997	.	+	0	Parent=Os04t0307300-00
Chr04	irgsp1_rep	mRNA	13862793	13869259	.	-	.	ID=Os04t0307466-01;Name=Os04t0307466-01;Locus_id=Os04g0307466;Note=Conserved hypothetical protein.;Transcript_evidence=AK243645 (DDBJ%2C Best hit);ORF_evidence=NP_001173857.1 (RefSeq);NIAS_FLcDNA=J100088D05;TENOR=Os04t0307466-01;KEGG=Os04t0307466-01
Chr04	irgsp1_rep	five_prime_UTR	13868987	13869259	.	-	.	Parent=Os04t0307466-01
Chr04	irgsp1_rep	five_prime_UTR	13868777	13868851	.	-	.	Parent=Os04t0307466-01
Chr04	irgsp1_rep	five_prime_UTR	13863478	13863537	.	-	.	Parent=Os04t0307466-01
Chr04	irgsp1_rep	CDS	13863217	13863477	.	-	0	Parent=Os04t0307466-01
Chr04	irgsp1_rep	three_prime_UTR	13862793	13863216	.	-	.	Parent=Os04t0307466-01
Chr04	irgsp1_rep	mRNA	13863222	13868260	.	+	.	ID=Os04t0307500-01;Name=Os04t0307500-01;Locus_id=Os04g0307500;CGSNL Gene Symbol=WAK32;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 32;Oryzabase Gene Symbol Synonym(s)=OsWAK32;Note=Similar to OSIGBa0113B06.2 protein.;Transcript_evidence=AK067041 (DDBJ%2C Best hit);ORF_evidence=Q01M59 (UniProt);NIAS_FLcDNA=J013092H22;Oryzabase=6932;TENOR=Os04t0307500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	13863222	13863324	.	+	.	Parent=Os04t0307500-01
Chr04	irgsp1_rep	five_prime_UTR	13863447	13863614	.	+	.	Parent=Os04t0307500-01
Chr04	irgsp1_rep	five_prime_UTR	13864108	13864121	.	+	.	Parent=Os04t0307500-01
Chr04	irgsp1_rep	CDS	13864122	13864692	.	+	0	Parent=Os04t0307500-01
Chr04	irgsp1_rep	CDS	13865818	13866356	.	+	2	Parent=Os04t0307500-01
Chr04	irgsp1_rep	three_prime_UTR	13866357	13866514	.	+	.	Parent=Os04t0307500-01
Chr04	irgsp1_rep	three_prime_UTR	13866593	13868260	.	+	.	Parent=Os04t0307500-01
Chr04	irgsp1_rep	mRNA	13890220	13894411	.	-	.	ID=Os04t0307800-00;Name=Os04t0307800-00;Locus_id=Os04g0307800;Note=Myb-related protein P%2C C-terminal domain containing protein.;Transcript_evidence=AK360477 (DDBJ);ORF_evidence=longestORF;InterPro=Myb-related protein P%2C C-terminal (IPR010588);TENOR=Os04t0307800-00
Chr04	irgsp1_rep	CDS	13894133	13894411	.	-	0	Parent=Os04t0307800-00
Chr04	irgsp1_rep	CDS	13891545	13891704	.	-	0	Parent=Os04t0307800-00
Chr04	irgsp1_rep	CDS	13891417	13891460	.	-	2	Parent=Os04t0307800-00
Chr04	irgsp1_rep	three_prime_UTR	13891306	13891416	.	-	.	Parent=Os04t0307800-00
Chr04	irgsp1_rep	three_prime_UTR	13890457	13890724	.	-	.	Parent=Os04t0307800-00
Chr04	irgsp1_rep	three_prime_UTR	13890220	13890345	.	-	.	Parent=Os04t0307800-00
Chr04	irgsp1_rep	mRNA	13913869	13915062	.	+	.	ID=Os04t0307900-00;Name=Os04t0307900-00;Locus_id=Os04g0307900;Note=Similar to H0211A12.1 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01KX3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os04t0307900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	13913869	13915062	.	+	0	Parent=Os04t0307900-00
Chr04	irgsp1_rep	mRNA	13926309	13928367	.	-	.	ID=Os04t0308000-01;Name=Os04t0308000-01;Locus_id=Os04g0308000;CGSNL Gene Symbol=WAK35;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 35;Oryzabase Gene Symbol Synonym(s)=OsWAK35;Note=Conserved hypothetical protein.;Transcript_evidence=AK068752 (DDBJ%2C Best hit);ORF_evidence=Q2R6E5 (UniProt);NIAS_FLcDNA=J013159C14;Oryzabase=6935;TENOR=Os04t0308000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	13928127	13928367	.	-	.	Parent=Os04t0308000-01
Chr04	irgsp1_rep	CDS	13928112	13928126	.	-	0	Parent=Os04t0308000-01
Chr04	irgsp1_rep	CDS	13926927	13927007	.	-	0	Parent=Os04t0308000-01
Chr04	irgsp1_rep	three_prime_UTR	13926309	13926926	.	-	.	Parent=Os04t0308000-01
Chr04	irgsp1_rep	mRNA	13918556	13928367	.	-	.	ID=Os04t0308000-02;Name=Os04t0308000-02;Locus_id=Os04g0308000;CGSNL Gene Symbol=WAK35;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 35;Oryzabase Gene Symbol Synonym(s)=OsWAK35;Note=Non-protein coding transcript.;Transcript_evidence=AK100568 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023104O10;Oryzabase=6935;TENOR=Os04t0308000-02;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	exon	13925746	13928367	.	-	.	Parent=Os04t0308000-02
Chr04	irgsp1_rep	exon	13925540	13925649	.	-	.	Parent=Os04t0308000-02
Chr04	irgsp1_rep	exon	13919011	13920496	.	-	.	Parent=Os04t0308000-02
Chr04	irgsp1_rep	exon	13918556	13918925	.	-	.	Parent=Os04t0308000-02
Chr04	irgsp1_rep	mRNA	13918557	13926029	.	-	.	ID=Os04t0308000-03;Name=Os04t0308000-03;Locus_id=Os04g0308000;CGSNL Gene Symbol=WAK35;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 35;Oryzabase Gene Symbol Synonym(s)=OsWAK35;Note=Non-protein coding transcript.;Transcript_evidence=AK070011 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023038K11;Oryzabase=6935;TENOR=Os04t0308000-03
Chr04	irgsp1_rep	exon	13925738	13926029	.	-	.	Parent=Os04t0308000-03
Chr04	irgsp1_rep	exon	13925540	13925649	.	-	.	Parent=Os04t0308000-03
Chr04	irgsp1_rep	exon	13920852	13921620	.	-	.	Parent=Os04t0308000-03
Chr04	irgsp1_rep	exon	13920347	13920496	.	-	.	Parent=Os04t0308000-03
Chr04	irgsp1_rep	exon	13919332	13920280	.	-	.	Parent=Os04t0308000-03
Chr04	irgsp1_rep	exon	13919011	13919109	.	-	.	Parent=Os04t0308000-03
Chr04	irgsp1_rep	exon	13918557	13918925	.	-	.	Parent=Os04t0308000-03
Chr04	irgsp1_rep	mRNA	13923888	13925115	.	+	.	ID=Os04t0308100-01;Name=Os04t0308100-01;Locus_id=Os04g0308100;Note=Similar to Wall-associated kinase 4.;Transcript_evidence=AK108495 (DDBJ%2C Best hit);ORF_evidence=Q01KX2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-143-G09;Expression=AK108495;TENOR=Os04t0308100-01;KEGG=Os04t0308100-01
Chr04	irgsp1_rep	five_prime_UTR	13923888	13923889	.	+	.	Parent=Os04t0308100-01
Chr04	irgsp1_rep	CDS	13923890	13924744	.	+	0	Parent=Os04t0308100-01
Chr04	irgsp1_rep	three_prime_UTR	13924745	13925115	.	+	.	Parent=Os04t0308100-01
Chr04	irgsp1_rep	mRNA	13934207	13937518	.	-	.	ID=Os04t0308400-00;Name=Os04t0308400-00;Locus_id=Os04g0308400;Note=Similar to H0211A12.13 protein.;Transcript_evidence=BT040052 (DDBJ);ORF_evidence=Q01KW1 (UniProt);TENOR=Os04t0308400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	13937487	13937518	.	-	.	Parent=Os04t0308400-00
Chr04	irgsp1_rep	CDS	13937031	13937486	.	-	0	Parent=Os04t0308400-00
Chr04	irgsp1_rep	CDS	13934207	13934407	.	-	0	Parent=Os04t0308400-00
Chr04	irgsp1_rep	mRNA	13937943	13939128	.	+	.	ID=Os04t0308500-01;Name=Os04t0308500-01;Locus_id=Os04g0308500;Note=Similar to H0211A12.12 protein.;Transcript_evidence=AK108905 (DDBJ%2C Best hit);ORF_evidence=Q01KW2 (UniProt);NIAS_FLcDNA=002-152-F12;Expression=AK108905;TENOR=Os04t0308500-01;KEGG=Os04t0308500-01
Chr04	irgsp1_rep	five_prime_UTR	13937943	13938010	.	+	.	Parent=Os04t0308500-01
Chr04	irgsp1_rep	CDS	13938011	13938460	.	+	0	Parent=Os04t0308500-01
Chr04	irgsp1_rep	CDS	13938715	13938897	.	+	0	Parent=Os04t0308500-01
Chr04	irgsp1_rep	three_prime_UTR	13938898	13939128	.	+	.	Parent=Os04t0308500-01
Chr04	irgsp1_rep	mRNA	13949076	13950288	.	-	.	ID=Os04t0308600-00;Name=Os04t0308600-00;Locus_id=Os04g0308600;Note=Similar to H0211A12.11 protein.;Transcript_evidence=U75531 (DDBJ);ORF_evidence=Q01KW3 (UniProt);TENOR=Os04t0308600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	13950278	13950288	.	-	.	Parent=Os04t0308600-00
Chr04	irgsp1_rep	CDS	13949703	13950277	.	-	0	Parent=Os04t0308600-00
Chr04	irgsp1_rep	CDS	13949076	13949589	.	-	1	Parent=Os04t0308600-00
Chr04	irgsp1_rep	mRNA	13993817	13997557	.	-	.	ID=Os04t0309100-01;Name=Os04t0309100-01;Locus_id=Os04g0309100;Oryzabase Gene Name Synonym(s)=NAD(P)H-quinone oxidoreductase chain 3;Note=Similar to NADH dehydrogenase subunit 2.;Transcript_evidence=AK069240 (DDBJ%2C Best hit);ORF_evidence=NP_039459.1 (RefSeq);NIAS_FLcDNA=J023010F18;Oryzabase=12441;TENOR=Os04t0309100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	13997255	13997557	.	-	.	Parent=Os04t0309100-01
Chr04	irgsp1_rep	five_prime_UTR	13997124	13997172	.	-	.	Parent=Os04t0309100-01
Chr04	irgsp1_rep	five_prime_UTR	13995551	13997021	.	-	.	Parent=Os04t0309100-01
Chr04	irgsp1_rep	CDS	13995194	13995550	.	-	0	Parent=Os04t0309100-01
Chr04	irgsp1_rep	three_prime_UTR	13993817	13995193	.	-	.	Parent=Os04t0309100-01
Chr04	irgsp1_rep	mRNA	14003852	14005995	.	-	.	ID=Os04t0309400-01;Name=Os04t0309400-01;Locus_id=Os04g0309400;Note=Conserved hypothetical protein.;Transcript_evidence=AK120707 (DDBJ%2C Best hit);ORF_evidence=NP_001052314.1 (RefSeq);NIAS_FLcDNA=J023001D08;TENOR=Os04t0309400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	14004937	14005995	.	-	.	Parent=Os04t0309400-01
Chr04	irgsp1_rep	CDS	14004641	14004936	.	-	0	Parent=Os04t0309400-01
Chr04	irgsp1_rep	CDS	14004499	14004541	.	-	1	Parent=Os04t0309400-01
Chr04	irgsp1_rep	three_prime_UTR	14004398	14004498	.	-	.	Parent=Os04t0309400-01
Chr04	irgsp1_rep	three_prime_UTR	14003852	14004167	.	-	.	Parent=Os04t0309400-01
Chr04	irgsp1_rep	mRNA	14004195	14004418	.	-	.	ID=Os04t0309400-02;Name=Os04t0309400-02;Locus_id=Os04g0309400;Note=Non-protein coding transcript.;Transcript_evidence=AK058758 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-001-B06;TENOR=Os04t0309400-02
Chr04	irgsp1_rep	exon	14004195	14004418	.	-	.	Parent=Os04t0309400-02
Chr04	irgsp1_rep	mRNA	14004989	14006270	.	+	.	ID=Os04t0309500-01;Name=Os04t0309500-01;Locus_id=Os04g0309500;Note=Conserved hypothetical protein.;Transcript_evidence=AK107263 (DDBJ%2C Best hit);ORF_evidence=B8ARM4 (UniProt);NIAS_FLcDNA=002-125-H03;Expression=AK107263;TENOR=Os04t0309500-01;KEGG=Os04t0309500-01
Chr04	irgsp1_rep	five_prime_UTR	14004989	14005437	.	+	.	Parent=Os04t0309500-01
Chr04	irgsp1_rep	CDS	14005438	14006067	.	+	0	Parent=Os04t0309500-01
Chr04	irgsp1_rep	three_prime_UTR	14006068	14006270	.	+	.	Parent=Os04t0309500-01
Chr04	irgsp1_rep	mRNA	14008245	14013443	.	+	.	ID=Os04t0309600-01;Name=Os04t0309600-01;Locus_id=Os04g0309600;CGSNL Gene Symbol=RSUS5;CGSNL Gene Name=SUCROSE SYNTHASE 5;Oryzabase Gene Symbol Synonym(s)=SUS5%2C SS5%2C OsScS5%2C RSs5%2C RSus5%2C OsSUS5;Oryzabase Gene Name Synonym(s)=Rice sucrose synthase-5%2C Sucrose synthase 5%2C Sucrose-UDP glucosyltransferase 5%2C Sucrose synthase-5%2C rice SuSy gene 5;Note=Similar to Sucrose synthase.;Transcript_evidence=AK063304 (DDBJ%2C Best hit);ORF_evidence=H6TFZ4-2;GO=Biological Process: sucrose metabolic process (GO:0005985),Biological Process: biosynthetic process (GO:0009058),Molecular Function: sucrose synthase activity (GO:0016157);InterPro=Sucrose synthase (IPR000368),Glycosyl transferase%2C family 1 (IPR001296),Sucrose synthase%2C plant/cyanobacteria (IPR012820);NIAS_FLcDNA=001-113-F06;Manual Curation=September 9%2C 2020;Oryzabase=14341;Expression=AK063304;TENOR=Os04t0309600-01;KEGG=Os04t0309600-01
Chr04	irgsp1_rep	five_prime_UTR	14008245	14008319	.	+	.	Parent=Os04t0309600-01
Chr04	irgsp1_rep	CDS	14008320	14008420	.	+	0	Parent=Os04t0309600-01
Chr04	irgsp1_rep	CDS	14008974	14009106	.	+	1	Parent=Os04t0309600-01
Chr04	irgsp1_rep	CDS	14009199	14009353	.	+	0	Parent=Os04t0309600-01
Chr04	irgsp1_rep	CDS	14009483	14009675	.	+	1	Parent=Os04t0309600-01
Chr04	irgsp1_rep	CDS	14009763	14009881	.	+	0	Parent=Os04t0309600-01
Chr04	irgsp1_rep	CDS	14009965	14010181	.	+	1	Parent=Os04t0309600-01
Chr04	irgsp1_rep	CDS	14010303	14010398	.	+	0	Parent=Os04t0309600-01
Chr04	irgsp1_rep	CDS	14010541	14010717	.	+	0	Parent=Os04t0309600-01
Chr04	irgsp1_rep	CDS	14010808	14010924	.	+	0	Parent=Os04t0309600-01
Chr04	irgsp1_rep	CDS	14011031	14011197	.	+	0	Parent=Os04t0309600-01
Chr04	irgsp1_rep	CDS	14011313	14011537	.	+	1	Parent=Os04t0309600-01
Chr04	irgsp1_rep	CDS	14011685	14011748	.	+	1	Parent=Os04t0309600-01
Chr04	irgsp1_rep	CDS	14011782	14012006	.	+	0	Parent=Os04t0309600-01
Chr04	irgsp1_rep	CDS	14012257	14012501	.	+	0	Parent=Os04t0309600-01
Chr04	irgsp1_rep	CDS	14012622	14012760	.	+	1	Parent=Os04t0309600-01
Chr04	irgsp1_rep	CDS	14012860	14012949	.	+	0	Parent=Os04t0309600-01
Chr04	irgsp1_rep	CDS	14013045	14013070	.	+	0	Parent=Os04t0309600-01
Chr04	irgsp1_rep	CDS	14013194	14013239	.	+	1	Parent=Os04t0309600-01
Chr04	irgsp1_rep	three_prime_UTR	14013240	14013443	.	+	.	Parent=Os04t0309600-01
Chr04	irgsp1_rep	mRNA	14008320	14013239	.	+	.	ID=Os04t0309600-02;Name=Os04t0309600-02;Locus_id=Os04g0309600;RAP-DB Gene Symbol Synonym(s)=OsSUS5;RAP-DB Gene Name Synonym(s)=sucrose synthase 5;CGSNL Gene Symbol=RSUS5;CGSNL Gene Name=SUCROSE SYNTHASE 5;Oryzabase Gene Symbol Synonym(s)=SUS5%2C SS5%2C OsScS5%2C RSs5%2C RSus5%2C OsSUS5;Oryzabase Gene Name Synonym(s)=Rice sucrose synthase-5%2C Sucrose synthase 5%2C Sucrose-UDP glucosyltransferase 5%2C Sucrose synthase-5%2C rice SuSy gene 5;Note=Sucrose synthase;Transcript_evidence=HQ895723;ORF_evidence=H6TFZ4;GO=Biological Process: sucrose metabolic process (GO:0005985),Molecular Function: sucrose synthase activity (GO:0016157);InterPro=Sucrose synthase%2C plant/cyanobacteria (IPR012820),Sucrose synthase (IPR000368),Glycosyl transferase%2C family 1 (IPR001296);Manual Curation=September 9%2C 2020;Literature_PMID=21533550;Oryzabase=14341;Subcellular location=plasma membrane (GO:0005886) [mainly], cytosol (GO:0005829)
Chr04	irgsp1_rep	CDS	14008320	14008420	.	+	0	Parent=Os04t0309600-02
Chr04	irgsp1_rep	CDS	14008974	14009106	.	+	1	Parent=Os04t0309600-02
Chr04	irgsp1_rep	CDS	14009199	14009353	.	+	0	Parent=Os04t0309600-02
Chr04	irgsp1_rep	CDS	14009483	14009675	.	+	1	Parent=Os04t0309600-02
Chr04	irgsp1_rep	CDS	14009763	14009881	.	+	0	Parent=Os04t0309600-02
Chr04	irgsp1_rep	CDS	14009965	14010181	.	+	1	Parent=Os04t0309600-02
Chr04	irgsp1_rep	CDS	14010303	14010398	.	+	0	Parent=Os04t0309600-02
Chr04	irgsp1_rep	CDS	14010541	14010717	.	+	0	Parent=Os04t0309600-02
Chr04	irgsp1_rep	CDS	14010808	14010924	.	+	0	Parent=Os04t0309600-02
Chr04	irgsp1_rep	CDS	14011031	14011197	.	+	0	Parent=Os04t0309600-02
Chr04	irgsp1_rep	CDS	14011313	14011537	.	+	1	Parent=Os04t0309600-02
Chr04	irgsp1_rep	CDS	14011685	14012006	.	+	1	Parent=Os04t0309600-02
Chr04	irgsp1_rep	CDS	14012257	14012501	.	+	0	Parent=Os04t0309600-02
Chr04	irgsp1_rep	CDS	14012622	14012760	.	+	1	Parent=Os04t0309600-02
Chr04	irgsp1_rep	CDS	14012860	14012951	.	+	0	Parent=Os04t0309600-02
Chr04	irgsp1_rep	CDS	14013047	14013070	.	+	1	Parent=Os04t0309600-02
Chr04	irgsp1_rep	CDS	14013194	14013239	.	+	1	Parent=Os04t0309600-02
Chr04	irgsp1_rep	mRNA	14009966	14012493	.	-	.	ID=Os04t0309751-00;Name=Os04t0309751-00;Locus_id=Os04g0309751;Note=Hypothetical protein.;Transcript_evidence=tplb0054p19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0309751-00
Chr04	irgsp1_rep	five_prime_UTR	14012391	14012493	.	-	.	Parent=Os04t0309751-00
Chr04	irgsp1_rep	CDS	14012252	14012390	.	-	0	Parent=Os04t0309751-00
Chr04	irgsp1_rep	CDS	14011701	14012001	.	-	2	Parent=Os04t0309751-00
Chr04	irgsp1_rep	CDS	14011482	14011545	.	-	1	Parent=Os04t0309751-00
Chr04	irgsp1_rep	three_prime_UTR	14011341	14011481	.	-	.	Parent=Os04t0309751-00
Chr04	irgsp1_rep	three_prime_UTR	14011029	14011223	.	-	.	Parent=Os04t0309751-00
Chr04	irgsp1_rep	three_prime_UTR	14010848	14010919	.	-	.	Parent=Os04t0309751-00
Chr04	irgsp1_rep	three_prime_UTR	14010524	14010754	.	-	.	Parent=Os04t0309751-00
Chr04	irgsp1_rep	three_prime_UTR	14010312	14010392	.	-	.	Parent=Os04t0309751-00
Chr04	irgsp1_rep	three_prime_UTR	14009966	14010189	.	-	.	Parent=Os04t0309751-00
Chr04	irgsp1_rep	mRNA	14027961	14029187	.	+	.	ID=Os04t0309900-00;Name=Os04t0309900-00;Locus_id=Os04g0309900;Note=Similar to H0211A12.5 protein.;Transcript_evidence=BT041036 (DDBJ);ORF_evidence=Q01KW9 (UniProt);TENOR=Os04t0309900-00;KEGG=Os04t0309900-00
Chr04	irgsp1_rep	five_prime_UTR	14027961	14027985	.	+	.	Parent=Os04t0309900-00
Chr04	irgsp1_rep	CDS	14027986	14028560	.	+	0	Parent=Os04t0309900-00
Chr04	irgsp1_rep	CDS	14028674	14029187	.	+	1	Parent=Os04t0309900-00
Chr04	irgsp1_rep	mRNA	14038897	14040082	.	-	.	ID=Os04t0310100-01;Name=Os04t0310100-01;Locus_id=Os04g0310100;Note=Similar to H0211A12.12 protein.;Transcript_evidence=AK108905 (DDBJ%2C Best hit);ORF_evidence=Q01KW2 (UniProt);NIAS_FLcDNA=002-152-F12;Expression=AK108905;TENOR=Os04t0310100-01;KEGG=Os04t0310100-01
Chr04	irgsp1_rep	five_prime_UTR	14040015	14040082	.	-	.	Parent=Os04t0310100-01
Chr04	irgsp1_rep	CDS	14039565	14040014	.	-	0	Parent=Os04t0310100-01
Chr04	irgsp1_rep	CDS	14039128	14039310	.	-	0	Parent=Os04t0310100-01
Chr04	irgsp1_rep	three_prime_UTR	14038897	14039127	.	-	.	Parent=Os04t0310100-01
Chr04	irgsp1_rep	mRNA	14040507	14041461	.	+	.	ID=Os04t0310200-00;Name=Os04t0310200-00;Locus_id=Os04g0310200;Note=Similar to H0211A12.13 protein.;Transcript_evidence=EU966444 (DDBJ);ORF_evidence=Q01KW1 (UniProt);TENOR=Os04t0310200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	14040507	14040538	.	+	.	Parent=Os04t0310200-00
Chr04	irgsp1_rep	CDS	14040539	14040994	.	+	0	Parent=Os04t0310200-00
Chr04	irgsp1_rep	CDS	14041261	14041461	.	+	0	Parent=Os04t0310200-00
Chr04	irgsp1_rep	mRNA	14056535	14061026	.	+	.	ID=Os04t0310400-00;Name=Os04t0310400-00;Locus_id=Os04g0310400;CGSNL Gene Symbol=WAK36;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 36;Oryzabase Gene Symbol Synonym(s)=OsWAK36%2C OsRLCK140%2C RLCK140;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 140;Note=Similar to H0211A12.15 protein.;Transcript_evidence=tplb0060i15 (Wheat FLcDNA);ORF_evidence=Q01KV9 (UniProt);Oryzabase=6936;TENOR=Os04t0310400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	14056535	14056841	.	+	0	Parent=Os04t0310400-00
Chr04	irgsp1_rep	CDS	14057596	14058138	.	+	2	Parent=Os04t0310400-00
Chr04	irgsp1_rep	CDS	14059995	14060215	.	+	2	Parent=Os04t0310400-00
Chr04	irgsp1_rep	three_prime_UTR	14060216	14061026	.	+	.	Parent=Os04t0310400-00
Chr04	irgsp1_rep	mRNA	14062656	14068023	.	-	.	ID=Os04t0310500-01;Name=Os04t0310500-01;Locus_id=Os04g0310500;Note=NADH dehydrogenase [ubiquinone] (complex I)%2C alpha subcomplex%2C subunit 2 domain containing protein.;Transcript_evidence=AK121249 (DDBJ%2C Best hit);ORF_evidence=Q01KV8 (UniProt);InterPro=Ribosomal protein/NADH dehydrogenase domain (IPR007741),Thioredoxin-like fold (IPR012336),NADH dehydrogenase [ubiquinone] (complex I)%2C alpha subcomplex%2C subunit 2 (IPR016464);NIAS_FLcDNA=J023101B10;Expression=AK121249;TENOR=Os04t0310500-01;KEGG=Os04t0310500-01 (EC:1.6.5.3%2C EC:1.6.99.3)
Chr04	irgsp1_rep	five_prime_UTR	14067783	14068023	.	-	.	Parent=Os04t0310500-01
Chr04	irgsp1_rep	CDS	14067697	14067782	.	-	0	Parent=Os04t0310500-01
Chr04	irgsp1_rep	CDS	14067391	14067607	.	-	1	Parent=Os04t0310500-01
Chr04	irgsp1_rep	three_prime_UTR	14062656	14067390	.	-	.	Parent=Os04t0310500-01
Chr04	irgsp1_rep	mRNA	14062656	14067869	.	-	.	ID=Os04t0310500-02;Name=Os04t0310500-02;Locus_id=Os04g0310500;Note=NADH dehydrogenase [ubiquinone] (complex I)%2C alpha subcomplex%2C subunit 2 domain containing protein.;Transcript_evidence=AK063780 (DDBJ%2C Best hit),AK121577 (DDBJ%2C Best hit);ORF_evidence=Q01KV8 (UniProt);InterPro=Ribosomal protein/NADH dehydrogenase domain (IPR007741),Thioredoxin-like fold (IPR012336),NADH dehydrogenase [ubiquinone] (complex I)%2C alpha subcomplex%2C subunit 2 (IPR016464);NIAS_FLcDNA=001-121-D06,J033036J18;TENOR=Os04t0310500-02
Chr04	irgsp1_rep	five_prime_UTR	14067783	14067869	.	-	.	Parent=Os04t0310500-02
Chr04	irgsp1_rep	CDS	14067697	14067782	.	-	0	Parent=Os04t0310500-02
Chr04	irgsp1_rep	CDS	14067501	14067607	.	-	1	Parent=Os04t0310500-02
Chr04	irgsp1_rep	CDS	14062935	14063041	.	-	2	Parent=Os04t0310500-02
Chr04	irgsp1_rep	three_prime_UTR	14062656	14062934	.	-	.	Parent=Os04t0310500-02
Chr04	irgsp1_rep	mRNA	14072641	14074737	.	-	.	ID=Os04t0310800-01;Name=Os04t0310800-01;Locus_id=Os04g0310800;RAP-DB Gene Symbol Synonym(s)=OsACS9%2C 4CL4%2C OsACOS12;RAP-DB Gene Name Synonym(s)=acyl-CoA synthetase 9%2C 4-hydroxycinnamate CoA ligase 4;Oryzabase Gene Symbol Synonym(s)=OsACS9%2C ACS9%2C 4CL4%2C OsACOS12%2C ACOS12;Oryzabase Gene Name Synonym(s)=acyl-CoA synthetase 9%2C 4-hydroxycinnamate CoA ligase 4%2C fatty acyl-CoA synthetase 12;Note=Fatty acyl-CoA synthetase%2C Pollen exine formation%2C Anther development%2C Sporopollenin synthesis;Transcript_evidence=Inferred from literature;ORF_evidence=Q7XXL2;GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873),AMP-binding enzyme C-terminal domain (IPR025110),AMP-binding%2C conserved site (IPR020845);NIAS_FLcDNA=J080313P22 (truncated);Manual Curation=November 25%2C 2016;Literature_PMID=27871243;Oryzabase=15674;TENOR=Os04t0310800-01;KEGG=Os04t0310800-01 (EC:6.2.1.2);B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	14073299	14074737	.	-	0	Parent=Os04t0310800-01
Chr04	irgsp1_rep	CDS	14072826	14073054	.	-	1	Parent=Os04t0310800-01
Chr04	irgsp1_rep	three_prime_UTR	14072641	14072825	.	-	.	Parent=Os04t0310800-01
Chr04	irgsp1_rep	mRNA	14072868	14074667	.	+	.	ID=Os04t0310900-00;Name=Os04t0310900-00;Locus_id=Os04g0310900;Oryzabase Gene Name Synonym(s)=4-Coumarate-CoA ligase;Note=Hypothetical protein.;Transcript_evidence=tplb0058f21 (Wheat FLcDNA);ORF_evidence=longestORF;Oryzabase=22528;TENOR=Os04t0310900-00
Chr04	irgsp1_rep	five_prime_UTR	14072868	14072904	.	+	.	Parent=Os04t0310900-00
Chr04	irgsp1_rep	CDS	14072905	14073044	.	+	0	Parent=Os04t0310900-00
Chr04	irgsp1_rep	CDS	14073291	14074667	.	+	1	Parent=Os04t0310900-00
Chr04	irgsp1_rep	mRNA	14074779	14074944	.	+	.	ID=Os04t0311000-00;Name=Os04t0311000-00;Locus_id=Os04g0311000;Note=Non-protein coding transcript.;Transcript_evidence=EU949053 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0311000-00
Chr04	irgsp1_rep	exon	14074779	14074944	.	+	.	Parent=Os04t0311000-00
Chr04	irgsp1_rep	mRNA	14094373	14095093	.	+	.	ID=Os04t0311100-01;Name=Os04t0311100-01;Locus_id=Os04g0311100;CGSNL Gene Symbol=MORC7;CGSNL Gene Name=MICRORCHIDIA PROTEIN 7;Oryzabase Gene Symbol Synonym(s)=OsMORC7;Oryzabase Gene Name Synonym(s)=Microrchidia protein 7;Note=Similar to OSIGBa0148D14.7 protein.;Transcript_evidence=AK059112 (DDBJ%2C Best hit);ORF_evidence=Q01M14 (UniProt);NIAS_FLcDNA=001-022-E03;Oryzabase=22643;Expression=AK059112;TENOR=Os04t0311100-01;KEGG=Os04t0311100-01
Chr04	irgsp1_rep	five_prime_UTR	14094373	14094373	.	+	.	Parent=Os04t0311100-01
Chr04	irgsp1_rep	CDS	14094374	14094496	.	+	0	Parent=Os04t0311100-01
Chr04	irgsp1_rep	CDS	14094588	14094656	.	+	0	Parent=Os04t0311100-01
Chr04	irgsp1_rep	three_prime_UTR	14094657	14095093	.	+	.	Parent=Os04t0311100-01
Chr04	irgsp1_rep	mRNA	14129614	14132120	.	+	.	ID=Os04t0311400-01;Name=Os04t0311400-01;Locus_id=Os04g0311400;Note=Similar to Cysteine proteinase 1 precursor (EC 3.4.22.-).;Transcript_evidence=AK071948 (DDBJ%2C Best hit);ORF_evidence=Q01M10 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase%2C cysteine peptidase active site (IPR000169),Peptidase C1A%2C papain C-terminal (IPR000668),Peptidase C1A%2C papain (IPR013128);NIAS_FLcDNA=J013078J21;Expression=AK071948;TENOR=Os04t0311400-01;KEGG=Os04t0311400-01
Chr04	irgsp1_rep	five_prime_UTR	14129614	14129614	.	+	.	Parent=Os04t0311400-01
Chr04	irgsp1_rep	CDS	14129615	14130032	.	+	0	Parent=Os04t0311400-01
Chr04	irgsp1_rep	CDS	14130076	14130155	.	+	2	Parent=Os04t0311400-01
Chr04	irgsp1_rep	CDS	14130265	14130384	.	+	0	Parent=Os04t0311400-01
Chr04	irgsp1_rep	CDS	14131327	14131570	.	+	0	Parent=Os04t0311400-01
Chr04	irgsp1_rep	CDS	14131653	14131945	.	+	2	Parent=Os04t0311400-01
Chr04	irgsp1_rep	three_prime_UTR	14131946	14132120	.	+	.	Parent=Os04t0311400-01
Chr04	irgsp1_rep	mRNA	14130233	14132212	.	+	.	ID=Os04t0311400-02;Name=Os04t0311400-02;Locus_id=Os04g0311400;Note=Similar to OSIGBa0130O15.4 protein.;Transcript_evidence=AK121305 (DDBJ%2C Best hit);ORF_evidence=Q01M10 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase C1A%2C papain C-terminal (IPR000668),Peptidase C1A%2C papain (IPR013128);NIAS_FLcDNA=J023111H18;TENOR=Os04t0311400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	14130233	14131317	.	+	.	Parent=Os04t0311400-02
Chr04	irgsp1_rep	CDS	14131318	14131728	.	+	0	Parent=Os04t0311400-02
Chr04	irgsp1_rep	three_prime_UTR	14131729	14132212	.	+	.	Parent=Os04t0311400-02
Chr04	irgsp1_rep	mRNA	14132242	14134548	.	-	.	ID=Os04t0311500-00;Name=Os04t0311500-00;Locus_id=Os04g0311500;Note=Non-protein coding transcript.;Transcript_evidence=CT835028 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os04t0311500-00
Chr04	irgsp1_rep	exon	14134513	14134548	.	-	.	Parent=Os04t0311500-00
Chr04	irgsp1_rep	exon	14132242	14132607	.	-	.	Parent=Os04t0311500-00
Chr04	irgsp1_rep	mRNA	14186061	14187787	.	-	.	ID=Os04t0312100-01;Name=Os04t0312100-01;Locus_id=Os04g0312100;Note=Peptidase C12%2C ubiquitin carboxyl-terminal hydrolase 1 domain containing protein.;Transcript_evidence=AK120695 (DDBJ%2C Best hit);ORF_evidence=Q01LS2 (UniProt);InterPro=Plant organelle RNA recognition domain (IPR021099);NIAS_FLcDNA=J013170G11;Expression=AK120695;TENOR=Os04t0312100-01;KEGG=Os04t0312100-01
Chr04	irgsp1_rep	five_prime_UTR	14187760	14187787	.	-	.	Parent=Os04t0312100-01
Chr04	irgsp1_rep	CDS	14186251	14187759	.	-	0	Parent=Os04t0312100-01
Chr04	irgsp1_rep	three_prime_UTR	14186061	14186250	.	-	.	Parent=Os04t0312100-01
Chr04	irgsp1_rep	mRNA	14209330	14210830	.	+	.	ID=Os04t0312500-00;Name=Os04t0312500-00;Locus_id=Os04g0312500;Note=Similar to Eukaryotic aspartyl protease family protein.;Transcript_evidence=tplb0007g24 (Wheat FLcDNA);ORF_evidence=Q10M98 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);TENOR=Os04t0312500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	14209330	14209863	.	+	0	Parent=Os04t0312500-00
Chr04	irgsp1_rep	three_prime_UTR	14209864	14210830	.	+	.	Parent=Os04t0312500-00
Chr04	irgsp1_rep	mRNA	14257068	14257183	.	-	.	ID=Os04t0313301-00;Name=Os04t0313301-00;Locus_id=Os04g0313301;Note=Conserved hypothetical protein.;Transcript_evidence=AY212116 (DDBJ);ORF_evidence=Q7XKL7 (UniProt);TENOR=Os04t0313301-00
Chr04	irgsp1_rep	CDS	14257118	14257183	.	-	0	Parent=Os04t0313301-00
Chr04	irgsp1_rep	three_prime_UTR	14257068	14257117	.	-	.	Parent=Os04t0313301-00
Chr04	irgsp1_rep	mRNA	14264568	14266184	.	-	.	ID=Os04t0313500-00;Name=Os04t0313500-00;Locus_id=Os04g0313500;Oryzabase Gene Symbol Synonym(s)=OsFbox197%2C Os_F0620;Oryzabase Gene Name Synonym(s)=F-box protein 197;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01LR3 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);Oryzabase=16986;TENOR=Os04t0313500-00;KEGG=Os04t0313500-00
Chr04	irgsp1_rep	CDS	14264568	14266184	.	-	0	Parent=Os04t0313500-00
Chr04	irgsp1_rep	mRNA	14265582	14266113	.	+	.	ID=Os04t0313550-00;Name=Os04t0313550-00;Locus_id=Os04g0313550;Note=Hypothetical protein.;Transcript_evidence=EU950476 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0313550-00
Chr04	irgsp1_rep	five_prime_UTR	14265582	14265884	.	+	.	Parent=Os04t0313550-00
Chr04	irgsp1_rep	CDS	14265885	14266113	.	+	0	Parent=Os04t0313550-00
Chr04	irgsp1_rep	mRNA	14281124	14285519	.	+	.	ID=Os04t0313600-00;Name=Os04t0313600-00;Locus_id=Os04g0313600;Note=Zinc finger%2C CCHC-type domain containing protein.;Transcript_evidence=AK288309 (DDBJ%2C Secondary hit);ORF_evidence=A2XRV4 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Zinc finger%2C CCHC retroviral-type (IPR013084);TENOR=Os04t0313600-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	14281124	14283446	.	+	.	Parent=Os04t0313600-00
Chr04	irgsp1_rep	CDS	14283447	14283746	.	+	0	Parent=Os04t0313600-00
Chr04	irgsp1_rep	three_prime_UTR	14283747	14285519	.	+	.	Parent=Os04t0313600-00
Chr04	irgsp1_rep	mRNA	14302605	14302907	.	-	.	ID=Os04t0313900-00;Name=Os04t0313900-00;Locus_id=Os04g0313900;Note=Similar to cytokinin-O-glucosyltransferase 2.;Transcript_evidence=EU976007 (DDBJ);ORF_evidence=NP_001152029.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os04t0313900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	14302605	14302907	.	-	0	Parent=Os04t0313900-00
Chr04	irgsp1_rep	mRNA	14311779	14313175	.	-	.	ID=Os04t0314100-00;Name=Os04t0314100-00;Locus_id=Os04g0314100;Note=Similar to H0107B07.2 protein.;Transcript_evidence=BT042944 (DDBJ);ORF_evidence=Q01M39 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os04t0314100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	14312952	14313175	.	-	.	Parent=Os04t0314100-00
Chr04	irgsp1_rep	CDS	14311779	14312951	.	-	0	Parent=Os04t0314100-00
Chr04	irgsp1_rep	mRNA	14311942	14313395	.	+	.	ID=Os04t0314201-00;Name=Os04t0314201-00;Locus_id=Os04g0314201;Note=Hypothetical protein.;Transcript_evidence=AK106366 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;TENOR=Os04t0314201-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	14311942	14312900	.	+	.	Parent=Os04t0314201-00
Chr04	irgsp1_rep	CDS	14312901	14313347	.	+	0	Parent=Os04t0314201-00
Chr04	irgsp1_rep	three_prime_UTR	14313348	14313395	.	+	.	Parent=Os04t0314201-00
Chr04	irgsp1_rep	mRNA	14345201	14346104	.	-	.	ID=Os04t0314500-00;Name=Os04t0314500-00;Locus_id=Os04g0314500;Note=Hypothetical protein.;Transcript_evidence=AK061480 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;TENOR=Os04t0314500-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	14345795	14346104	.	-	.	Parent=Os04t0314500-00
Chr04	irgsp1_rep	CDS	14345456	14345794	.	-	0	Parent=Os04t0314500-00
Chr04	irgsp1_rep	three_prime_UTR	14345201	14345455	.	-	.	Parent=Os04t0314500-00
Chr04	irgsp1_rep	mRNA	14352976	14354418	.	-	.	ID=Os04t0315350-00;Name=Os04t0315350-00;Locus_id=Os04g0315350;Note=Similar to cytokinin-O-glucosyltransferase 2.;Transcript_evidence=EU976007 (DDBJ);ORF_evidence=NP_001152029.1 (RefSeq);TENOR=Os04t0315350-00
Chr04	irgsp1_rep	five_prime_UTR	14354353	14354418	.	-	.	Parent=Os04t0315350-00
Chr04	irgsp1_rep	CDS	14354311	14354352	.	-	0	Parent=Os04t0315350-00
Chr04	irgsp1_rep	CDS	14353005	14353127	.	-	0	Parent=Os04t0315350-00
Chr04	irgsp1_rep	three_prime_UTR	14352976	14353004	.	-	.	Parent=Os04t0315350-00
Chr04	irgsp1_rep	mRNA	14453617	14454811	.	-	.	ID=Os04t0316200-01;Name=Os04t0316200-01;Locus_id=Os04g0316200;Oryzabase Gene Name Synonym(s)=Membrane-binding protein;Note=Protein of unknown function DUF26 domain containing protein.;Transcript_evidence=AK110725 (DDBJ%2C Best hit);ORF_evidence=Q6PUW7 (UniProt);InterPro=Gnk2-homologous domain (IPR002902);NIAS_FLcDNA=002-170-E04;Oryzabase=19113;Expression=AK110725;TENOR=Os04t0316200-01;KEGG=Os04t0316200-01
Chr04	irgsp1_rep	five_prime_UTR	14454779	14454811	.	-	.	Parent=Os04t0316200-01
Chr04	irgsp1_rep	CDS	14454463	14454778	.	-	0	Parent=Os04t0316200-01
Chr04	irgsp1_rep	CDS	14453933	14454405	.	-	2	Parent=Os04t0316200-01
Chr04	irgsp1_rep	three_prime_UTR	14453617	14453932	.	-	.	Parent=Os04t0316200-01
Chr04	irgsp1_rep	mRNA	14478198	14482584	.	+	.	ID=Os04t0316701-01;Name=Os04t0316701-01;Locus_id=Os04g0316701;Note=Non-protein coding transcript.;Transcript_evidence=AK288881 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090079G03;TENOR=Os04t0316701-01
Chr04	irgsp1_rep	exon	14478198	14482584	.	+	.	Parent=Os04t0316701-01
Chr04	irgsp1_rep	mRNA	14492627	14494063	.	+	.	ID=Os04t0316800-00;Name=Os04t0316800-00;Locus_id=Os04g0316800;Note=Similar to OSIGBa0113K06.4 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01L13 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174);TENOR=Os04t0316800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	14492627	14492705	.	+	0	Parent=Os04t0316800-00
Chr04	irgsp1_rep	CDS	14492802	14492943	.	+	2	Parent=Os04t0316800-00
Chr04	irgsp1_rep	CDS	14492971	14494063	.	+	1	Parent=Os04t0316800-00
Chr04	irgsp1_rep	mRNA	14526290	14528182	.	+	.	ID=Os04t0317300-00;Name=Os04t0317300-00;Locus_id=Os04g0317300;Oryzabase Gene Symbol Synonym(s)=OsFbox198%2C Os_F0644;Oryzabase Gene Name Synonym(s)=F-box protein 198;Note=Similar to OSIGBa0113K06.4 protein.;Transcript_evidence=AK064343 (DDBJ%2C Secondary hit);ORF_evidence=Q01L13 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174);Oryzabase=16987;Expression=AK064343;TENOR=Os04t0317300-00;KEGG=Os04t0317300-00
Chr04	irgsp1_rep	five_prime_UTR	14526290	14526384	.	+	.	Parent=Os04t0317300-00
Chr04	irgsp1_rep	CDS	14526385	14526427	.	+	0	Parent=Os04t0317300-00
Chr04	irgsp1_rep	CDS	14526519	14526614	.	+	2	Parent=Os04t0317300-00
Chr04	irgsp1_rep	CDS	14526715	14527979	.	+	2	Parent=Os04t0317300-00
Chr04	irgsp1_rep	three_prime_UTR	14527980	14528182	.	+	.	Parent=Os04t0317300-00
Chr04	irgsp1_rep	mRNA	14535043	14535396	.	-	.	ID=Os04t0317400-00;Name=Os04t0317400-00;Locus_id=Os04g0317400;Note=Similar to OSIGBa0113K06.3 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01L14 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Pollen allergen Lol p2 (IPR005453),Pollen allergen/expansin%2C C-terminal (IPR007117);TENOR=Os04t0317400-00;KEGG=Os04t0317400-00
Chr04	irgsp1_rep	CDS	14535043	14535396	.	-	0	Parent=Os04t0317400-00
Chr04	irgsp1_rep	mRNA	14543677	14544362	.	-	.	ID=Os04t0317500-01;Name=Os04t0317500-01;Locus_id=Os04g0317500;Note=Pollen allergen Lol p2 family protein.;Transcript_evidence=AK069922 (DDBJ%2C Best hit);ORF_evidence=Q01L14 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Pollen allergen Lol p2 (IPR005453),Pollen allergen/expansin%2C C-terminal (IPR007117);NIAS_FLcDNA=J023035O06;Expression=AK069922;TENOR=Os04t0317500-01;KEGG=Os04t0317500-01
Chr04	irgsp1_rep	five_prime_UTR	14544297	14544362	.	-	.	Parent=Os04t0317500-01
Chr04	irgsp1_rep	CDS	14543943	14544296	.	-	0	Parent=Os04t0317500-01
Chr04	irgsp1_rep	three_prime_UTR	14543677	14543942	.	-	.	Parent=Os04t0317500-01
Chr04	irgsp1_rep	mRNA	14558934	14559609	.	-	.	ID=Os04t0317800-01;Name=Os04t0317800-01;Locus_id=Os04g0317800;Note=Pollen allergen Lol p2 family protein.;Transcript_evidence=AK111098 (DDBJ%2C Best hit);ORF_evidence=Q01L14 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Pollen allergen Lol p2 (IPR005453),Pollen allergen/expansin%2C C-terminal (IPR007117);NIAS_FLcDNA=002-175-G10;Expression=AK111098;TENOR=Os04t0317800-01;KEGG=Os04t0317800-01
Chr04	irgsp1_rep	five_prime_UTR	14559538	14559609	.	-	.	Parent=Os04t0317800-01
Chr04	irgsp1_rep	CDS	14559184	14559537	.	-	0	Parent=Os04t0317800-01
Chr04	irgsp1_rep	three_prime_UTR	14558934	14559183	.	-	.	Parent=Os04t0317800-01
Chr04	irgsp1_rep	mRNA	14675326	14679021	.	+	.	ID=Os04t0319600-01;Name=Os04t0319600-01;Locus_id=Os04g0319600;Note=tRNA methyltransferase complex GCD14 subunit domain containing protein.;Transcript_evidence=AK243633 (DDBJ%2C Best hit);ORF_evidence=Q01M41 (UniProt);GO=Biological Process: tRNA methylation (GO:0030488),Molecular Function: tRNA (adenine-N1-)-methyltransferase activity (GO:0016429);InterPro=tRNA methyltransferase complex GCD14 subunit (IPR014816);NIAS_FLcDNA=J100087E16;TENOR=Os04t0319600-01;KEGG=Os04t0319600-01 (EC:2.1.1.36)
Chr04	irgsp1_rep	five_prime_UTR	14675326	14675711	.	+	.	Parent=Os04t0319600-01
Chr04	irgsp1_rep	CDS	14675712	14676205	.	+	0	Parent=Os04t0319600-01
Chr04	irgsp1_rep	CDS	14677234	14677478	.	+	1	Parent=Os04t0319600-01
Chr04	irgsp1_rep	CDS	14678170	14678414	.	+	2	Parent=Os04t0319600-01
Chr04	irgsp1_rep	three_prime_UTR	14678415	14678431	.	+	.	Parent=Os04t0319600-01
Chr04	irgsp1_rep	three_prime_UTR	14678598	14679021	.	+	.	Parent=Os04t0319600-01
Chr04	irgsp1_rep	mRNA	14680109	14681661	.	+	.	ID=Os04t0319700-00;Name=Os04t0319700-00;Locus_id=Os04g0319700;Note=Similar to Glucosyltransferase (Fragment).;Transcript_evidence=CT837852 (DDBJ%2C Best hit);ORF_evidence=Q01M40 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os04t0319700-00;KEGG=Os04t0319700-00
Chr04	irgsp1_rep	five_prime_UTR	14680109	14680143	.	+	.	Parent=Os04t0319700-00
Chr04	irgsp1_rep	CDS	14680144	14681574	.	+	0	Parent=Os04t0319700-00
Chr04	irgsp1_rep	three_prime_UTR	14681575	14681661	.	+	.	Parent=Os04t0319700-00
Chr04	irgsp1_rep	mRNA	14692554	14694215	.	+	.	ID=Os04t0319800-01;Name=Os04t0319800-01;Locus_id=Os04g0319800;Note=Similar to Cytokinin-O-glucosyltransferase 2 (EC 2.4.1.-) (Zeatin O- glucosyltransferase 2).;Transcript_evidence=AK241629 (DDBJ%2C Best hit);ORF_evidence=Q01M39 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J065187N03;TENOR=Os04t0319800-01;KEGG=Os04t0319800-01
Chr04	irgsp1_rep	five_prime_UTR	14692554	14692606	.	+	.	Parent=Os04t0319800-01
Chr04	irgsp1_rep	CDS	14692607	14694097	.	+	0	Parent=Os04t0319800-01
Chr04	irgsp1_rep	three_prime_UTR	14694098	14694215	.	+	.	Parent=Os04t0319800-01
Chr04	irgsp1_rep	mRNA	14698828	14703781	.	-	.	ID=Os04t0320000-00;Name=Os04t0320000-00;Locus_id=Os04g0320000;Note=Similar to H0107B07.3 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01M51 (UniProt);TENOR=Os04t0320000-00
Chr04	irgsp1_rep	CDS	14703677	14703781	.	-	0	Parent=Os04t0320000-00
Chr04	irgsp1_rep	CDS	14703139	14703342	.	-	0	Parent=Os04t0320000-00
Chr04	irgsp1_rep	CDS	14702981	14703052	.	-	0	Parent=Os04t0320000-00
Chr04	irgsp1_rep	CDS	14701609	14701797	.	-	0	Parent=Os04t0320000-00
Chr04	irgsp1_rep	CDS	14700858	14700965	.	-	0	Parent=Os04t0320000-00
Chr04	irgsp1_rep	CDS	14700686	14700765	.	-	0	Parent=Os04t0320000-00
Chr04	irgsp1_rep	CDS	14700308	14700359	.	-	1	Parent=Os04t0320000-00
Chr04	irgsp1_rep	CDS	14700109	14700177	.	-	0	Parent=Os04t0320000-00
Chr04	irgsp1_rep	CDS	14699998	14700032	.	-	0	Parent=Os04t0320000-00
Chr04	irgsp1_rep	CDS	14698828	14699089	.	-	1	Parent=Os04t0320000-00
Chr04	irgsp1_rep	mRNA	14711428	14716700	.	+	.	ID=Os04t0320100-01;Name=Os04t0320100-01;Locus_id=Os04g0320100;CGSNL Gene Symbol=HCAR;CGSNL Gene Name=7-HYDROXYMETHYL CHL A REDUCTASE;Oryzabase Gene Symbol Synonym(s)=OsHCAR;Oryzabase Gene Name Synonym(s)=7-hydroxymethyl Chl a reductase;Note=Coenzyme F420 hydrogenase/dehydrogenase beta subunit%2C N-terminal domain containing protein.;Transcript_evidence=AK068015 (DDBJ%2C Best hit);ORF_evidence=Q01M50 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Coenzyme F420 hydrogenase/dehydrogenase beta subunit%2C N-terminal (IPR007516),Coenzyme F420 hydrogenase/dehydrogenase beta subunit%2C C-terminal (IPR007525),Prismane-like (IPR011254);NIAS_FLcDNA=J013131B07;Oryzabase=22088;Expression=AK068015;TENOR=Os04t0320100-01;KEGG=Os04t0320100-01 (EC:1.12.98.1)
Chr04	irgsp1_rep	five_prime_UTR	14711428	14711517	.	+	.	Parent=Os04t0320100-01
Chr04	irgsp1_rep	five_prime_UTR	14712583	14712600	.	+	.	Parent=Os04t0320100-01
Chr04	irgsp1_rep	CDS	14712601	14712909	.	+	0	Parent=Os04t0320100-01
Chr04	irgsp1_rep	CDS	14712990	14713098	.	+	0	Parent=Os04t0320100-01
Chr04	irgsp1_rep	CDS	14713183	14713265	.	+	2	Parent=Os04t0320100-01
Chr04	irgsp1_rep	CDS	14713362	14713405	.	+	0	Parent=Os04t0320100-01
Chr04	irgsp1_rep	CDS	14713742	14713820	.	+	1	Parent=Os04t0320100-01
Chr04	irgsp1_rep	CDS	14714248	14714299	.	+	0	Parent=Os04t0320100-01
Chr04	irgsp1_rep	CDS	14714380	14714442	.	+	2	Parent=Os04t0320100-01
Chr04	irgsp1_rep	CDS	14714545	14714642	.	+	2	Parent=Os04t0320100-01
Chr04	irgsp1_rep	CDS	14714823	14714856	.	+	0	Parent=Os04t0320100-01
Chr04	irgsp1_rep	CDS	14714994	14715057	.	+	2	Parent=Os04t0320100-01
Chr04	irgsp1_rep	CDS	14715158	14715206	.	+	1	Parent=Os04t0320100-01
Chr04	irgsp1_rep	three_prime_UTR	14715207	14715535	.	+	.	Parent=Os04t0320100-01
Chr04	irgsp1_rep	three_prime_UTR	14715643	14715712	.	+	.	Parent=Os04t0320100-01
Chr04	irgsp1_rep	three_prime_UTR	14715833	14715890	.	+	.	Parent=Os04t0320100-01
Chr04	irgsp1_rep	three_prime_UTR	14715999	14716063	.	+	.	Parent=Os04t0320100-01
Chr04	irgsp1_rep	three_prime_UTR	14716153	14716247	.	+	.	Parent=Os04t0320100-01
Chr04	irgsp1_rep	three_prime_UTR	14716344	14716700	.	+	.	Parent=Os04t0320100-01
Chr04	irgsp1_rep	mRNA	14711428	14716700	.	+	.	ID=Os04t0320100-02;Name=Os04t0320100-02;Locus_id=Os04g0320100;RAP-DB Gene Symbol Synonym(s)=OsHCAR;RAP-DB Gene Name Synonym(s)=7-hydroxymethyl chlorophyll a reductase;CGSNL Gene Symbol=HCAR;CGSNL Gene Name=7-HYDROXYMETHYL CHL A REDUCTASE;Oryzabase Gene Symbol Synonym(s)=OsHCAR;Oryzabase Gene Name Synonym(s)=7-hydroxymethyl Chl a reductase;Note=7-hydroxymethyl chlorophyll a reductase%2C Promotion of chlorophyll degradation%2C Modulation of cell death signaling;Transcript_evidence=Inferred from literature;ORF_evidence=Q7XTG7;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Prismane-like superfamily (IPR011254),Coenzyme F420 hydrogenase/dehydrogenase beta subunit%2C N-terminal (IPR007516),Coenzyme F420 hydrogenase/dehydrogenase beta subunit%2C C-terminal (IPR007525);Manual Curation=November 15%2C 2017;Literature_PMID=29047257;Oryzabase=22088
Chr04	irgsp1_rep	five_prime_UTR	14711428	14711517	.	+	.	Parent=Os04t0320100-02
Chr04	irgsp1_rep	five_prime_UTR	14712583	14712600	.	+	.	Parent=Os04t0320100-02
Chr04	irgsp1_rep	CDS	14712601	14712909	.	+	0	Parent=Os04t0320100-02
Chr04	irgsp1_rep	CDS	14712990	14713098	.	+	0	Parent=Os04t0320100-02
Chr04	irgsp1_rep	CDS	14713183	14713267	.	+	2	Parent=Os04t0320100-02
Chr04	irgsp1_rep	CDS	14713364	14713405	.	+	1	Parent=Os04t0320100-02
Chr04	irgsp1_rep	CDS	14713742	14713820	.	+	1	Parent=Os04t0320100-02
Chr04	irgsp1_rep	CDS	14714248	14714299	.	+	0	Parent=Os04t0320100-02
Chr04	irgsp1_rep	CDS	14714380	14714442	.	+	2	Parent=Os04t0320100-02
Chr04	irgsp1_rep	CDS	14714545	14714642	.	+	2	Parent=Os04t0320100-02
Chr04	irgsp1_rep	CDS	14714823	14714858	.	+	0	Parent=Os04t0320100-02
Chr04	irgsp1_rep	CDS	14714996	14715057	.	+	0	Parent=Os04t0320100-02
Chr04	irgsp1_rep	CDS	14715158	14715185	.	+	1	Parent=Os04t0320100-02
Chr04	irgsp1_rep	CDS	14715456	14715535	.	+	0	Parent=Os04t0320100-02
Chr04	irgsp1_rep	CDS	14715643	14715712	.	+	1	Parent=Os04t0320100-02
Chr04	irgsp1_rep	CDS	14715833	14715890	.	+	0	Parent=Os04t0320100-02
Chr04	irgsp1_rep	CDS	14715999	14716063	.	+	2	Parent=Os04t0320100-02
Chr04	irgsp1_rep	CDS	14716153	14716247	.	+	0	Parent=Os04t0320100-02
Chr04	irgsp1_rep	CDS	14716344	14716428	.	+	1	Parent=Os04t0320100-02
Chr04	irgsp1_rep	three_prime_UTR	14716429	14716700	.	+	.	Parent=Os04t0320100-02
Chr04	irgsp1_rep	mRNA	14718535	14722074	.	-	.	ID=Os04t0320200-01;Name=Os04t0320200-01;Locus_id=Os04g0320200;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK069513 (DDBJ%2C Best hit),AK104028 (DDBJ%2C Best hit),AK119256 (DDBJ%2C Best hit);ORF_evidence=Q01M49 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J023020H09,001-020-A12,001-123-H03;Expression=AK069513;TENOR=Os04t0320200-01;KEGG=Os04t0320200-01
Chr04	irgsp1_rep	five_prime_UTR	14721984	14722074	.	-	.	Parent=Os04t0320200-01
Chr04	irgsp1_rep	CDS	14721768	14721983	.	-	0	Parent=Os04t0320200-01
Chr04	irgsp1_rep	CDS	14718754	14720112	.	-	0	Parent=Os04t0320200-01
Chr04	irgsp1_rep	three_prime_UTR	14718535	14718753	.	-	.	Parent=Os04t0320200-01
Chr04	irgsp1_rep	mRNA	14742590	14744334	.	-	.	ID=Os04t0320700-01;Name=Os04t0320700-01;Locus_id=Os04g0320700;Oryzabase Gene Name Synonym(s)=7-deoxyloganetin glucosyltransferase;Note=Similar to Glucosyltransferase (Fragment).;Transcript_evidence=AK119530 (DDBJ%2C Best hit),AK105966 (DDBJ%2C Best hit);ORF_evidence=Q01M48 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=001-203-C07,001-205-E07;Oryzabase=23283;TENOR=Os04t0320700-01
Chr04	irgsp1_rep	five_prime_UTR	14744240	14744334	.	-	.	Parent=Os04t0320700-01
Chr04	irgsp1_rep	CDS	14743699	14744239	.	-	0	Parent=Os04t0320700-01
Chr04	irgsp1_rep	CDS	14742674	14743626	.	-	2	Parent=Os04t0320700-01
Chr04	irgsp1_rep	three_prime_UTR	14742590	14742673	.	-	.	Parent=Os04t0320700-01
Chr04	irgsp1_rep	mRNA	14742565	14744275	.	-	.	ID=Os04t0320700-02;Name=Os04t0320700-02;Locus_id=Os04g0320700;Oryzabase Gene Name Synonym(s)=7-deoxyloganetin glucosyltransferase;Note=UDP-glucuronosyl/UDP-glucosyltransferase domain containing protein.;Transcript_evidence=AK105783 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=001-202-G07;Oryzabase=23283;TENOR=Os04t0320700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	14743699	14744275	.	-	0	Parent=Os04t0320700-02
Chr04	irgsp1_rep	CDS	14742674	14743626	.	-	2	Parent=Os04t0320700-02
Chr04	irgsp1_rep	three_prime_UTR	14742565	14742673	.	-	.	Parent=Os04t0320700-02
Chr04	irgsp1_rep	mRNA	14787290	14789443	.	+	.	ID=Os04t0321100-00;Name=Os04t0321100-00;Locus_id=Os04g0321100;Note=Similar to H0107B07.6 protein.;Transcript_evidence=BT042944 (DDBJ);ORF_evidence=Q01M48 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os04t0321100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	14787290	14787911	.	+	0	Parent=Os04t0321100-00
Chr04	irgsp1_rep	CDS	14788517	14789442	.	+	2	Parent=Os04t0321100-00
Chr04	irgsp1_rep	three_prime_UTR	14789443	14789443	.	+	.	Parent=Os04t0321100-00
Chr04	irgsp1_rep	mRNA	14804703	14805459	.	+	.	ID=Os04t0321500-00;Name=Os04t0321500-00;Locus_id=Os04g0321500;Note=50S ribosomal protein L27.;Transcript_evidence=AB496675 (DDBJ%2C Secondary hit);ORF_evidence=B6T4C5 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L27 (IPR001684),Ribosomal protein L27%2C conserved site (IPR018261);TENOR=Os04t0321500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	14804703	14804781	.	+	0	Parent=Os04t0321500-00
Chr04	irgsp1_rep	CDS	14804876	14804997	.	+	2	Parent=Os04t0321500-00
Chr04	irgsp1_rep	CDS	14805223	14805459	.	+	0	Parent=Os04t0321500-00
Chr04	irgsp1_rep	mRNA	14807385	14813122	.	+	.	ID=Os04t0321600-01;Name=Os04t0321600-01;Locus_id=Os04g0321600;CGSNL Gene Symbol=SPT16;CGSNL Gene Name=SUPPRESSOR OF TY16;Oryzabase Gene Symbol Synonym(s)=Osspt16;Oryzabase Gene Name Synonym(s)=Oryza sativa suppressor of Ty 16 (homolog of the yeast. spt16 gene)%2C FACT complex subunit SPT16%2C Facilitates Chromatin transcription complex subunit SPT16;Note=Peptidase M24 family protein.;Transcript_evidence=AK121570 (DDBJ%2C Best hit);ORF_evidence=Q7X923 (UniProt);GO=Biological Process: cellular process (GO:0009987);InterPro=Peptidase M24%2C structural domain (IPR000994),Domain of unknown function DUF1747%2C eukaryote (IPR013719),FACT complex subunit Spt16p/Cdc68p (IPR013953);NIAS_FLcDNA=J033035J21;Oryzabase=7437;Expression=AK121570;TENOR=Os04t0321600-01;KEGG=Os04t0321600-01
Chr04	irgsp1_rep	five_prime_UTR	14807385	14807581	.	+	.	Parent=Os04t0321600-01
Chr04	irgsp1_rep	five_prime_UTR	14809577	14809609	.	+	.	Parent=Os04t0321600-01
Chr04	irgsp1_rep	CDS	14809610	14812780	.	+	0	Parent=Os04t0321600-01
Chr04	irgsp1_rep	three_prime_UTR	14812781	14813122	.	+	.	Parent=Os04t0321600-01
Chr04	irgsp1_rep	mRNA	14813350	14818333	.	-	.	ID=Os04t0321700-01;Name=Os04t0321700-01;Locus_id=Os04g0321700;CGSNL Gene Symbol=SCP23;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 23;Oryzabase Gene Symbol Synonym(s)=OsSCP23;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 23;Note=Similar to Serine carboxypeptidase I precursor (EC 3.4.16.5) (Carboxypeptidase C).;Transcript_evidence=AK068732 (DDBJ%2C Best hit);ORF_evidence=Q01LN2 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=J013159H01;Oryzabase=19206;Expression=AK068732;TENOR=Os04t0321700-01;KEGG=Os04t0321700-01 (EC:3.4.16.5)
Chr04	irgsp1_rep	five_prime_UTR	14818273	14818333	.	-	.	Parent=Os04t0321700-01
Chr04	irgsp1_rep	CDS	14818103	14818272	.	-	0	Parent=Os04t0321700-01
Chr04	irgsp1_rep	CDS	14817879	14818024	.	-	1	Parent=Os04t0321700-01
Chr04	irgsp1_rep	CDS	14817692	14817768	.	-	2	Parent=Os04t0321700-01
Chr04	irgsp1_rep	CDS	14816428	14816550	.	-	0	Parent=Os04t0321700-01
Chr04	irgsp1_rep	CDS	14816245	14816347	.	-	0	Parent=Os04t0321700-01
Chr04	irgsp1_rep	CDS	14816127	14816164	.	-	2	Parent=Os04t0321700-01
Chr04	irgsp1_rep	CDS	14815926	14816027	.	-	0	Parent=Os04t0321700-01
Chr04	irgsp1_rep	CDS	14815648	14815728	.	-	0	Parent=Os04t0321700-01
Chr04	irgsp1_rep	CDS	14815321	14815560	.	-	0	Parent=Os04t0321700-01
Chr04	irgsp1_rep	CDS	14815078	14815143	.	-	0	Parent=Os04t0321700-01
Chr04	irgsp1_rep	CDS	14814848	14814972	.	-	0	Parent=Os04t0321700-01
Chr04	irgsp1_rep	CDS	14814142	14814255	.	-	1	Parent=Os04t0321700-01
Chr04	irgsp1_rep	CDS	14813855	14813900	.	-	1	Parent=Os04t0321700-01
Chr04	irgsp1_rep	CDS	14813516	14813599	.	-	0	Parent=Os04t0321700-01
Chr04	irgsp1_rep	three_prime_UTR	14813350	14813515	.	-	.	Parent=Os04t0321700-01
Chr04	irgsp1_rep	mRNA	14813380	14818285	.	-	.	ID=Os04t0321700-02;Name=Os04t0321700-02;Locus_id=Os04g0321700;CGSNL Gene Symbol=SCP23;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 23;Oryzabase Gene Symbol Synonym(s)=OsSCP23;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 23;Note=Similar to Serine carboxypeptidase I precursor (EC 3.4.16.5) (Carboxypeptidase C).;Transcript_evidence=AK099397 (DDBJ%2C Best hit);ORF_evidence=Q01LN2 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=J013000M18;Oryzabase=19206;Expression=AK099397;TENOR=Os04t0321700-02;KEGG=Os04t0321700-02 (EC:3.4.16.5)
Chr04	irgsp1_rep	five_prime_UTR	14818273	14818285	.	-	.	Parent=Os04t0321700-02
Chr04	irgsp1_rep	CDS	14818103	14818272	.	-	0	Parent=Os04t0321700-02
Chr04	irgsp1_rep	CDS	14817879	14818024	.	-	1	Parent=Os04t0321700-02
Chr04	irgsp1_rep	CDS	14817692	14817768	.	-	2	Parent=Os04t0321700-02
Chr04	irgsp1_rep	CDS	14816428	14816550	.	-	0	Parent=Os04t0321700-02
Chr04	irgsp1_rep	CDS	14816245	14816347	.	-	0	Parent=Os04t0321700-02
Chr04	irgsp1_rep	CDS	14816127	14816164	.	-	2	Parent=Os04t0321700-02
Chr04	irgsp1_rep	CDS	14815926	14816027	.	-	0	Parent=Os04t0321700-02
Chr04	irgsp1_rep	CDS	14815648	14815728	.	-	0	Parent=Os04t0321700-02
Chr04	irgsp1_rep	CDS	14815321	14815560	.	-	0	Parent=Os04t0321700-02
Chr04	irgsp1_rep	CDS	14815078	14815143	.	-	0	Parent=Os04t0321700-02
Chr04	irgsp1_rep	CDS	14814848	14814972	.	-	0	Parent=Os04t0321700-02
Chr04	irgsp1_rep	CDS	14814142	14814255	.	-	1	Parent=Os04t0321700-02
Chr04	irgsp1_rep	CDS	14813855	14813900	.	-	1	Parent=Os04t0321700-02
Chr04	irgsp1_rep	CDS	14813516	14813599	.	-	0	Parent=Os04t0321700-02
Chr04	irgsp1_rep	three_prime_UTR	14813380	14813515	.	-	.	Parent=Os04t0321700-02
Chr04	irgsp1_rep	mRNA	14824448	14826775	.	-	.	ID=Os04t0321800-01;Name=Os04t0321800-01;Locus_id=Os04g0321800;Oryzabase Gene Symbol Synonym(s)=OsPP2C38%2C PP2C38%2C OsPP63;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C38%2C protein phosphatase 2C 38%2C protein phosphatase 63;Note=Similar to OSIGBa0097I24.2 protein.;Transcript_evidence=AK069106 (DDBJ%2C Best hit);ORF_evidence=Q01LN1 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J023007C07;Oryzabase=17912;Expression=AK069106;TENOR=Os04t0321800-01;KEGG=Os04t0321800-01
Chr04	irgsp1_rep	five_prime_UTR	14826700	14826775	.	-	.	Parent=Os04t0321800-01
Chr04	irgsp1_rep	CDS	14826283	14826699	.	-	0	Parent=Os04t0321800-01
Chr04	irgsp1_rep	CDS	14824612	14824986	.	-	0	Parent=Os04t0321800-01
Chr04	irgsp1_rep	CDS	14824448	14824501	.	-	0	Parent=Os04t0321800-01
Chr04	irgsp1_rep	mRNA	14821365	14826769	.	-	.	ID=Os04t0321800-02;Name=Os04t0321800-02;Locus_id=Os04g0321800;Oryzabase Gene Symbol Synonym(s)=OsPP2C38%2C PP2C38%2C OsPP63;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C38%2C protein phosphatase 2C 38%2C protein phosphatase 63;Note=Protein phosphatase 2C domain containing protein.;Transcript_evidence=AK071295 (DDBJ%2C Best hit);ORF_evidence=Q01LN1 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J023086G05;Oryzabase=17912;Expression=AK071295;TENOR=Os04t0321800-02;KEGG=Os04t0321800-02
Chr04	irgsp1_rep	five_prime_UTR	14826700	14826769	.	-	.	Parent=Os04t0321800-02
Chr04	irgsp1_rep	CDS	14826283	14826699	.	-	0	Parent=Os04t0321800-02
Chr04	irgsp1_rep	CDS	14824612	14824986	.	-	0	Parent=Os04t0321800-02
Chr04	irgsp1_rep	CDS	14824384	14824501	.	-	0	Parent=Os04t0321800-02
Chr04	irgsp1_rep	CDS	14822148	14822371	.	-	2	Parent=Os04t0321800-02
Chr04	irgsp1_rep	CDS	14821776	14822024	.	-	0	Parent=Os04t0321800-02
Chr04	irgsp1_rep	three_prime_UTR	14821365	14821775	.	-	.	Parent=Os04t0321800-02
Chr04	irgsp1_rep	mRNA	14863727	14864824	.	-	.	ID=Os04t0322100-01;Name=Os04t0322100-01;Locus_id=Os04g0322100;Oryzabase Gene Name Synonym(s)=Membrane-binding protein;Note=Protein of unknown function DUF26 domain containing protein.;Transcript_evidence=AK243256 (DDBJ%2C Best hit);ORF_evidence=Q01LM6 (UniProt);InterPro=Gnk2-homologous domain (IPR002902);NIAS_FLcDNA=J100048J12;Oryzabase=19112;TENOR=Os04t0322100-01;KEGG=Os04t0322100-01
Chr04	irgsp1_rep	five_prime_UTR	14864791	14864824	.	-	.	Parent=Os04t0322100-01
Chr04	irgsp1_rep	CDS	14863945	14864790	.	-	0	Parent=Os04t0322100-01
Chr04	irgsp1_rep	three_prime_UTR	14863727	14863944	.	-	.	Parent=Os04t0322100-01
Chr04	irgsp1_rep	mRNA	14927225	14928130	.	+	.	ID=Os04t0323500-01;Name=Os04t0323500-01;Locus_id=Os04g0323500;Note=Hypothetical protein.;Transcript_evidence=AK061480 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=006-308-G10;Expression=AK061480;TENOR=Os04t0323500-01;KEGG=Os04t0323500-01
Chr04	irgsp1_rep	five_prime_UTR	14927225	14927536	.	+	.	Parent=Os04t0323500-01
Chr04	irgsp1_rep	CDS	14927537	14927875	.	+	0	Parent=Os04t0323500-01
Chr04	irgsp1_rep	three_prime_UTR	14927876	14928130	.	+	.	Parent=Os04t0323500-01
Chr04	irgsp1_rep	mRNA	14927261	14929678	.	+	.	ID=Os04t0323500-02;Name=Os04t0323500-02;Locus_id=Os04g0323500;Note=Conserved hypothetical protein.;Transcript_evidence=AK069369 (DDBJ%2C Best hit);ORF_evidence=B9FEF1 (UniProt);NIAS_FLcDNA=J023013E03;TENOR=Os04t0323500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	14927261	14929158	.	+	.	Parent=Os04t0323500-02
Chr04	irgsp1_rep	CDS	14929159	14929323	.	+	0	Parent=Os04t0323500-02
Chr04	irgsp1_rep	three_prime_UTR	14929324	14929678	.	+	.	Parent=Os04t0323500-02
Chr04	irgsp1_rep	mRNA	14956367	14957850	.	+	.	ID=Os04t0323800-01;Name=Os04t0323800-01;Locus_id=Os04g0323800;Note=Hypothetical protein.;Transcript_evidence=AK066833 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013078J09;Expression=AK066833;TENOR=Os04t0323800-01;KEGG=Os04t0323800-01
Chr04	irgsp1_rep	five_prime_UTR	14956367	14956604	.	+	.	Parent=Os04t0323800-01
Chr04	irgsp1_rep	five_prime_UTR	14956768	14957325	.	+	.	Parent=Os04t0323800-01
Chr04	irgsp1_rep	CDS	14957326	14957631	.	+	0	Parent=Os04t0323800-01
Chr04	irgsp1_rep	three_prime_UTR	14957632	14957850	.	+	.	Parent=Os04t0323800-01
Chr04	irgsp1_rep	mRNA	14969826	14971280	.	-	.	ID=Os04t0324000-01;Name=Os04t0324000-01;Locus_id=Os04g0324000;Note=Hypothetical protein.;Transcript_evidence=AK106366 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-102-B11;Expression=AK106366;TENOR=Os04t0324000-01;KEGG=Os04t0324000-01
Chr04	irgsp1_rep	five_prime_UTR	14970321	14971280	.	-	.	Parent=Os04t0324000-01
Chr04	irgsp1_rep	CDS	14969874	14970320	.	-	0	Parent=Os04t0324000-01
Chr04	irgsp1_rep	three_prime_UTR	14969826	14969873	.	-	.	Parent=Os04t0324000-01
Chr04	irgsp1_rep	mRNA	14969861	14971484	.	+	.	ID=Os04t0324100-01;Name=Os04t0324100-01;Locus_id=Os04g0324100;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK240785 (DDBJ%2C Best hit);ORF_evidence=Q01M39 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J053089F16;TENOR=Os04t0324100-01;KEGG=Os04t0324100-01
Chr04	irgsp1_rep	five_prime_UTR	14969861	14969919	.	+	.	Parent=Os04t0324100-01
Chr04	irgsp1_rep	CDS	14969920	14971443	.	+	0	Parent=Os04t0324100-01
Chr04	irgsp1_rep	three_prime_UTR	14971444	14971484	.	+	.	Parent=Os04t0324100-01
Chr04	irgsp1_rep	mRNA	14988692	14988997	.	+	.	ID=Os04t0324400-00;Name=Os04t0324400-00;Locus_id=Os04g0324400;Note=Similar to cytokinin-O-glucosyltransferase 2.;Transcript_evidence=EU976007 (DDBJ);ORF_evidence=NP_001152029.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os04t0324400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	14988692	14988694	.	+	.	Parent=Os04t0324400-00
Chr04	irgsp1_rep	CDS	14988695	14988997	.	+	0	Parent=Os04t0324400-00
Chr04	irgsp1_rep	mRNA	15006079	15010473	.	-	.	ID=Os04t0324550-01;Name=Os04t0324550-01;Locus_id=Os04g0324550;Note=Zinc finger%2C CCHC-type domain containing protein.;Transcript_evidence=AK288309 (DDBJ%2C Best hit);ORF_evidence=A2XRV4 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Zinc finger%2C CCHC retroviral-type (IPR013084);NIAS_FLcDNA=J090020H08;TENOR=Os04t0324550-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	15008151	15010473	.	-	.	Parent=Os04t0324550-01
Chr04	irgsp1_rep	CDS	15007851	15008150	.	-	0	Parent=Os04t0324550-01
Chr04	irgsp1_rep	three_prime_UTR	15006079	15007850	.	-	.	Parent=Os04t0324550-01
Chr04	irgsp1_rep	mRNA	15025499	15026024	.	-	.	ID=Os04t0324750-00;Name=Os04t0324750-00;Locus_id=Os04g0324750;Note=Non-protein coding transcript.;Transcript_evidence=EU950476 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0324750-00
Chr04	irgsp1_rep	exon	15025499	15026024	.	-	.	Parent=Os04t0324750-00
Chr04	irgsp1_rep	mRNA	15067485	15069035	.	+	.	ID=Os04t0325300-01;Name=Os04t0325300-01;Locus_id=Os04g0325300;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=AK071605 (DDBJ%2C Best hit);ORF_evidence=Q2QZW8 (UniProt);NIAS_FLcDNA=J023102F23;Expression=AK071605;TENOR=Os04t0325300-01;KEGG=Os04t0325300-01
Chr04	irgsp1_rep	five_prime_UTR	15067485	15067485	.	+	.	Parent=Os04t0325300-01
Chr04	irgsp1_rep	CDS	15067486	15068598	.	+	0	Parent=Os04t0325300-01
Chr04	irgsp1_rep	three_prime_UTR	15068599	15068615	.	+	.	Parent=Os04t0325300-01
Chr04	irgsp1_rep	three_prime_UTR	15068730	15069035	.	+	.	Parent=Os04t0325300-01
Chr04	irgsp1_rep	mRNA	15098152	15107087	.	+	.	ID=Os04t0326000-00;Name=Os04t0326000-00;Locus_id=Os04g0326000;Note=Similar to H0107B07.3 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01M51 (UniProt);TENOR=Os04t0326000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	15098152	15098256	.	+	0	Parent=Os04t0326000-00
Chr04	irgsp1_rep	CDS	15098591	15098794	.	+	0	Parent=Os04t0326000-00
Chr04	irgsp1_rep	CDS	15098881	15098952	.	+	0	Parent=Os04t0326000-00
Chr04	irgsp1_rep	CDS	15100136	15100324	.	+	0	Parent=Os04t0326000-00
Chr04	irgsp1_rep	CDS	15100968	15101075	.	+	0	Parent=Os04t0326000-00
Chr04	irgsp1_rep	CDS	15101168	15101247	.	+	0	Parent=Os04t0326000-00
Chr04	irgsp1_rep	CDS	15101574	15101625	.	+	1	Parent=Os04t0326000-00
Chr04	irgsp1_rep	CDS	15101756	15101824	.	+	0	Parent=Os04t0326000-00
Chr04	irgsp1_rep	CDS	15101901	15101935	.	+	0	Parent=Os04t0326000-00
Chr04	irgsp1_rep	CDS	15102376	15102535	.	+	1	Parent=Os04t0326000-00
Chr04	irgsp1_rep	CDS	15104439	15104495	.	+	0	Parent=Os04t0326000-00
Chr04	irgsp1_rep	CDS	15104591	15104647	.	+	0	Parent=Os04t0326000-00
Chr04	irgsp1_rep	CDS	15104996	15105052	.	+	0	Parent=Os04t0326000-00
Chr04	irgsp1_rep	CDS	15105151	15105207	.	+	0	Parent=Os04t0326000-00
Chr04	irgsp1_rep	CDS	15105576	15105695	.	+	0	Parent=Os04t0326000-00
Chr04	irgsp1_rep	CDS	15106986	15107087	.	+	0	Parent=Os04t0326000-00
Chr04	irgsp1_rep	mRNA	15107706	15109384	.	-	.	ID=Os04t0326100-00;Name=Os04t0326100-00;Locus_id=Os04g0326100;Note=Similar to H0107B07.2 protein.;Transcript_evidence=CT837883 (DDBJ%2C Secondary hit);ORF_evidence=Q01M39 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os04t0326100-00;KEGG=Os04t0326100-00
Chr04	irgsp1_rep	five_prime_UTR	15109330	15109384	.	-	.	Parent=Os04t0326100-00
Chr04	irgsp1_rep	CDS	15107839	15109329	.	-	0	Parent=Os04t0326100-00
Chr04	irgsp1_rep	three_prime_UTR	15107706	15107838	.	-	.	Parent=Os04t0326100-00
Chr04	irgsp1_rep	mRNA	15120363	15121909	.	-	.	ID=Os04t0326201-00;Name=Os04t0326201-00;Locus_id=Os04g0326201;Note=Similar to H0107B07.1 protein.;Transcript_evidence=CT837852 (DDBJ%2C Secondary hit);ORF_evidence=Q01M40 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os04t0326201-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	15121902	15121909	.	-	.	Parent=Os04t0326201-00
Chr04	irgsp1_rep	CDS	15121079	15121901	.	-	0	Parent=Os04t0326201-00
Chr04	irgsp1_rep	CDS	15121007	15121056	.	-	2	Parent=Os04t0326201-00
Chr04	irgsp1_rep	three_prime_UTR	15120363	15121006	.	-	.	Parent=Os04t0326201-00
Chr04	irgsp1_rep	mRNA	15123073	15123627	.	-	.	ID=Os04t0326300-01;Name=Os04t0326300-01;Locus_id=Os04g0326300;Note=Hypothetical conserved gene.;Transcript_evidence=AK242372 (DDBJ%2C Best hit);ORF_evidence=NP_001052474.2 (RefSeq);NIAS_FLcDNA=J080037K19;TENOR=Os04t0326300-01;KEGG=Os04t0326300-01
Chr04	irgsp1_rep	five_prime_UTR	15123589	15123627	.	-	.	Parent=Os04t0326300-01
Chr04	irgsp1_rep	CDS	15123561	15123588	.	-	0	Parent=Os04t0326300-01
Chr04	irgsp1_rep	CDS	15123315	15123394	.	-	2	Parent=Os04t0326300-01
Chr04	irgsp1_rep	three_prime_UTR	15123073	15123314	.	-	.	Parent=Os04t0326300-01
Chr04	irgsp1_rep	mRNA	15135513	15136202	.	-	.	ID=Os04t0326366-00;Name=Os04t0326366-00;Locus_id=Os04g0326366;Note=Conserved hypothetical protein.;Transcript_evidence=FP092947 (DDBJ);ORF_evidence=Q5W6P3 (UniProt);TENOR=Os04t0326366-00
Chr04	irgsp1_rep	CDS	15135513	15136202	.	-	0	Parent=Os04t0326366-00
Chr04	irgsp1_rep	mRNA	15269336	15270012	.	+	.	ID=Os04t0328900-00;Name=Os04t0328900-00;Locus_id=Os04g0328900;Note=Similar to OSIGBa0113K06.3 protein.;Transcript_evidence=AK111098 (DDBJ%2C Secondary hit);ORF_evidence=Q01L14 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Pollen allergen Lol p2 (IPR005453),Pollen allergen/expansin%2C C-terminal (IPR007117);Expression=AK111098;TENOR=Os04t0328900-00;KEGG=Os04t0328900-00
Chr04	irgsp1_rep	five_prime_UTR	15269336	15269336	.	+	.	Parent=Os04t0328900-00
Chr04	irgsp1_rep	CDS	15269337	15269762	.	+	0	Parent=Os04t0328900-00
Chr04	irgsp1_rep	three_prime_UTR	15269763	15270012	.	+	.	Parent=Os04t0328900-00
Chr04	irgsp1_rep	mRNA	15284275	15284960	.	+	.	ID=Os04t0329200-00;Name=Os04t0329200-00;Locus_id=Os04g0329200;Note=Pollen allergen Lol p2 family protein.;Transcript_evidence=AK069922 (DDBJ%2C Secondary hit);ORF_evidence=Q01L14 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Pollen allergen Lol p2 (IPR005453),Pollen allergen/expansin%2C C-terminal (IPR007117);Expression=AK069922;TENOR=Os04t0329200-00;KEGG=Os04t0329200-00
Chr04	irgsp1_rep	five_prime_UTR	15284275	15284340	.	+	.	Parent=Os04t0329200-00
Chr04	irgsp1_rep	CDS	15284341	15284694	.	+	0	Parent=Os04t0329200-00
Chr04	irgsp1_rep	three_prime_UTR	15284695	15284960	.	+	.	Parent=Os04t0329200-00
Chr04	irgsp1_rep	mRNA	15292622	15292975	.	+	.	ID=Os04t0329300-00;Name=Os04t0329300-00;Locus_id=Os04g0329300;Note=Pollen allergen/expansin%2C C-terminal domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01L14 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Pollen allergen Lol p2 (IPR005453),Pollen allergen/expansin%2C C-terminal (IPR007117);TENOR=Os04t0329300-00;KEGG=Os04t0329300-00
Chr04	irgsp1_rep	CDS	15292622	15292975	.	+	0	Parent=Os04t0329300-00
Chr04	irgsp1_rep	mRNA	15297847	15299739	.	-	.	ID=Os04t0329500-01;Name=Os04t0329500-01;Locus_id=Os04g0329500;Oryzabase Gene Symbol Synonym(s)=OsFbox200%2C Os_F0645;Oryzabase Gene Name Synonym(s)=F-box protein 200;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK064343 (DDBJ%2C Best hit);ORF_evidence=Q01L13 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174);NIAS_FLcDNA=002-107-H08;Oryzabase=16989;Expression=AK064343;TENOR=Os04t0329500-01;KEGG=Os04t0329500-01
Chr04	irgsp1_rep	five_prime_UTR	15299645	15299739	.	-	.	Parent=Os04t0329500-01
Chr04	irgsp1_rep	CDS	15299602	15299644	.	-	0	Parent=Os04t0329500-01
Chr04	irgsp1_rep	CDS	15299415	15299510	.	-	2	Parent=Os04t0329500-01
Chr04	irgsp1_rep	CDS	15298050	15299314	.	-	2	Parent=Os04t0329500-01
Chr04	irgsp1_rep	three_prime_UTR	15297847	15298049	.	-	.	Parent=Os04t0329500-01
Chr04	irgsp1_rep	mRNA	15297923	15299683	.	-	.	ID=Os04t0329500-02;Name=Os04t0329500-02;Locus_id=Os04g0329500;Oryzabase Gene Symbol Synonym(s)=OsFbox200%2C Os_F0645;Oryzabase Gene Name Synonym(s)=F-box protein 200;Note=Similar to OSIGBa0113K06.4 protein.;Transcript_evidence=AK073994 (DDBJ%2C Best hit);ORF_evidence=Q01L13 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174);NIAS_FLcDNA=J033072H16;Oryzabase=16989;Expression=AK073994;TENOR=Os04t0329500-02;KEGG=Os04t0329500-02
Chr04	irgsp1_rep	five_prime_UTR	15299533	15299683	.	-	.	Parent=Os04t0329500-02
Chr04	irgsp1_rep	CDS	15299415	15299532	.	-	0	Parent=Os04t0329500-02
Chr04	irgsp1_rep	CDS	15298050	15299314	.	-	2	Parent=Os04t0329500-02
Chr04	irgsp1_rep	three_prime_UTR	15297923	15298049	.	-	.	Parent=Os04t0329500-02
Chr04	irgsp1_rep	mRNA	15312932	15314063	.	-	.	ID=Os04t0329650-00;Name=Os04t0329650-00;Locus_id=Os04g0329650;Note=Similar to cDNA clone:J033072H16%2C full insert sequence.;Transcript_evidence=ab initio prediction;ORF_evidence=B7EN03 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174);TENOR=Os04t0329650-00
Chr04	irgsp1_rep	CDS	15313967	15314063	.	-	0	Parent=Os04t0329650-00
Chr04	irgsp1_rep	CDS	15313831	15313944	.	-	2	Parent=Os04t0329650-00
Chr04	irgsp1_rep	CDS	15312932	15312975	.	-	2	Parent=Os04t0329650-00
Chr04	irgsp1_rep	mRNA	15342893	15344478	.	-	.	ID=Os04t0330200-01;Name=Os04t0330200-01;Locus_id=Os04g0330200;Note=Mannose-binding lectin domain containing protein.;Transcript_evidence=AK062413 (DDBJ%2C Best hit);ORF_evidence=Q01L08 (UniProt);InterPro=Mannose-binding lectin (IPR001229);NIAS_FLcDNA=001-102-F04;Expression=AK062413;TENOR=Os04t0330200-01;KEGG=Os04t0330200-01
Chr04	irgsp1_rep	five_prime_UTR	15344439	15344478	.	-	.	Parent=Os04t0330200-01
Chr04	irgsp1_rep	CDS	15344214	15344438	.	-	0	Parent=Os04t0330200-01
Chr04	irgsp1_rep	CDS	15342893	15343234	.	-	0	Parent=Os04t0330200-01
Chr04	irgsp1_rep	mRNA	15349482	15354932	.	+	.	ID=Os04t0330301-00;Name=Os04t0330301-00;Locus_id=Os04g0330301;Note=Conserved hypothetical protein.;Transcript_evidence=AK071032 (DDBJ%2C Secondary hit);ORF_evidence=NP_001173872.1 (RefSeq);TENOR=Os04t0330301-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	15349482	15349689	.	+	.	Parent=Os04t0330301-00
Chr04	irgsp1_rep	CDS	15349690	15350085	.	+	0	Parent=Os04t0330301-00
Chr04	irgsp1_rep	three_prime_UTR	15350086	15350391	.	+	.	Parent=Os04t0330301-00
Chr04	irgsp1_rep	three_prime_UTR	15350521	15350742	.	+	.	Parent=Os04t0330301-00
Chr04	irgsp1_rep	three_prime_UTR	15351734	15351913	.	+	.	Parent=Os04t0330301-00
Chr04	irgsp1_rep	three_prime_UTR	15353399	15353472	.	+	.	Parent=Os04t0330301-00
Chr04	irgsp1_rep	three_prime_UTR	15354638	15354932	.	+	.	Parent=Os04t0330301-00
Chr04	irgsp1_rep	mRNA	15356773	15360820	.	+	.	ID=Os04t0330400-00;Name=Os04t0330400-00;Locus_id=Os04g0330400;Note=Conserved hypothetical protein.;Transcript_evidence=AK068428 (DDBJ%2C Secondary hit);ORF_evidence=B8AH49 (UniProt);TENOR=Os04t0330400-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	15356773	15357712	.	+	.	Parent=Os04t0330400-00
Chr04	irgsp1_rep	five_prime_UTR	15358611	15358868	.	+	.	Parent=Os04t0330400-00
Chr04	irgsp1_rep	CDS	15358869	15359052	.	+	0	Parent=Os04t0330400-00
Chr04	irgsp1_rep	CDS	15359065	15359948	.	+	2	Parent=Os04t0330400-00
Chr04	irgsp1_rep	three_prime_UTR	15359949	15360360	.	+	.	Parent=Os04t0330400-00
Chr04	irgsp1_rep	three_prime_UTR	15360380	15360523	.	+	.	Parent=Os04t0330400-00
Chr04	irgsp1_rep	three_prime_UTR	15360643	15360820	.	+	.	Parent=Os04t0330400-00
Chr04	irgsp1_rep	mRNA	15380815	15398873	.	-	.	ID=Os04t0330900-01;Name=Os04t0330900-01;Locus_id=Os04g0330900;Note=Similar to OSIGBa0113K06.11 protein.;Transcript_evidence=AK066818 (DDBJ%2C Best hit);ORF_evidence=Q01L06 (UniProt);NIAS_FLcDNA=J013088I08;TENOR=Os04t0330900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	15398714	15398873	.	-	.	Parent=Os04t0330900-01
Chr04	irgsp1_rep	five_prime_UTR	15398420	15398536	.	-	.	Parent=Os04t0330900-01
Chr04	irgsp1_rep	five_prime_UTR	15397666	15397818	.	-	.	Parent=Os04t0330900-01
Chr04	irgsp1_rep	five_prime_UTR	15397321	15397555	.	-	.	Parent=Os04t0330900-01
Chr04	irgsp1_rep	five_prime_UTR	15397146	15397239	.	-	.	Parent=Os04t0330900-01
Chr04	irgsp1_rep	five_prime_UTR	15390067	15390135	.	-	.	Parent=Os04t0330900-01
Chr04	irgsp1_rep	five_prime_UTR	15388891	15389107	.	-	.	Parent=Os04t0330900-01
Chr04	irgsp1_rep	five_prime_UTR	15388679	15388808	.	-	.	Parent=Os04t0330900-01
Chr04	irgsp1_rep	five_prime_UTR	15388308	15388555	.	-	.	Parent=Os04t0330900-01
Chr04	irgsp1_rep	five_prime_UTR	15382529	15382610	.	-	.	Parent=Os04t0330900-01
Chr04	irgsp1_rep	CDS	15382035	15382528	.	-	0	Parent=Os04t0330900-01
Chr04	irgsp1_rep	CDS	15381743	15381923	.	-	1	Parent=Os04t0330900-01
Chr04	irgsp1_rep	CDS	15381590	15381646	.	-	0	Parent=Os04t0330900-01
Chr04	irgsp1_rep	three_prime_UTR	15381536	15381589	.	-	.	Parent=Os04t0330900-01
Chr04	irgsp1_rep	three_prime_UTR	15381376	15381448	.	-	.	Parent=Os04t0330900-01
Chr04	irgsp1_rep	three_prime_UTR	15381175	15381273	.	-	.	Parent=Os04t0330900-01
Chr04	irgsp1_rep	three_prime_UTR	15380815	15381095	.	-	.	Parent=Os04t0330900-01
Chr04	irgsp1_rep	mRNA	15388088	15398864	.	-	.	ID=Os04t0330900-02;Name=Os04t0330900-02;Locus_id=Os04g0330900;Note=Similar to cDNA clone:002-146-G03%2C full insert sequence.;Transcript_evidence=AK065565 (DDBJ%2C Best hit);ORF_evidence=B7F2P1 (UniProt);NIAS_FLcDNA=J013031B09;TENOR=Os04t0330900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	15398714	15398864	.	-	.	Parent=Os04t0330900-02
Chr04	irgsp1_rep	five_prime_UTR	15398420	15398536	.	-	.	Parent=Os04t0330900-02
Chr04	irgsp1_rep	five_prime_UTR	15397666	15397818	.	-	.	Parent=Os04t0330900-02
Chr04	irgsp1_rep	five_prime_UTR	15397321	15397555	.	-	.	Parent=Os04t0330900-02
Chr04	irgsp1_rep	five_prime_UTR	15395989	15397239	.	-	.	Parent=Os04t0330900-02
Chr04	irgsp1_rep	five_prime_UTR	15389130	15390135	.	-	.	Parent=Os04t0330900-02
Chr04	irgsp1_rep	CDS	15388824	15389129	.	-	0	Parent=Os04t0330900-02
Chr04	irgsp1_rep	three_prime_UTR	15388679	15388823	.	-	.	Parent=Os04t0330900-02
Chr04	irgsp1_rep	three_prime_UTR	15388088	15388555	.	-	.	Parent=Os04t0330900-02
Chr04	irgsp1_rep	mRNA	15388167	15388555	.	-	.	ID=Os04t0330900-03;Name=Os04t0330900-03;Locus_id=Os04g0330900;Note=Peptidase aspartic%2C catalytic domain containing protein.;Transcript_evidence=AK061886 (DDBJ%2C Best hit);ORF_evidence=B7F2P1 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=001-041-F08;Expression=AK061886;TENOR=Os04t0330900-03;KEGG=Os04t0330900-03
Chr04	irgsp1_rep	five_prime_UTR	15388514	15388555	.	-	.	Parent=Os04t0330900-03
Chr04	irgsp1_rep	CDS	15388304	15388513	.	-	0	Parent=Os04t0330900-03
Chr04	irgsp1_rep	three_prime_UTR	15388167	15388303	.	-	.	Parent=Os04t0330900-03
Chr04	irgsp1_rep	mRNA	15443388	15448006	.	-	.	ID=Os04t0331600-01;Name=Os04t0331600-01;Locus_id=Os04g0331600;Note=Similar to cDNA clone:002-146-G03%2C full insert sequence.;Transcript_evidence=AK100338 (DDBJ%2C Best hit);ORF_evidence=B7F2P1 (UniProt);NIAS_FLcDNA=J023081G13;TENOR=Os04t0331600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	15447917	15448006	.	-	.	Parent=Os04t0331600-01
Chr04	irgsp1_rep	CDS	15447608	15447916	.	-	0	Parent=Os04t0331600-01
Chr04	irgsp1_rep	three_prime_UTR	15447451	15447607	.	-	.	Parent=Os04t0331600-01
Chr04	irgsp1_rep	three_prime_UTR	15443388	15447325	.	-	.	Parent=Os04t0331600-01
Chr04	irgsp1_rep	mRNA	15454080	15456550	.	-	.	ID=Os04t0331650-00;Name=Os04t0331650-00;Locus_id=Os04g0331650;Note=Hypothetical conserved gene.;Transcript_evidence=CT834322 (DDBJ%2C Best hit);ORF_evidence=NP_001173874.1 (RefSeq);TENOR=Os04t0331650-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	15455536	15456550	.	-	.	Parent=Os04t0331650-00
Chr04	irgsp1_rep	CDS	15455507	15455535	.	-	0	Parent=Os04t0331650-00
Chr04	irgsp1_rep	CDS	15454110	15454281	.	-	1	Parent=Os04t0331650-00
Chr04	irgsp1_rep	three_prime_UTR	15454080	15454109	.	-	.	Parent=Os04t0331650-00
Chr04	irgsp1_rep	mRNA	15499548	15500598	.	-	.	ID=Os04t0332700-01;Name=Os04t0332700-01;Locus_id=Os04g0332700;Note=Conserved hypothetical protein.;Transcript_evidence=AK071842 (DDBJ%2C Best hit);ORF_evidence=Q6MWJ9 (UniProt);NIAS_FLcDNA=J023119D23;Expression=AK071842;TENOR=Os04t0332700-01;KEGG=Os04t0332700-01
Chr04	irgsp1_rep	five_prime_UTR	15500569	15500598	.	-	.	Parent=Os04t0332700-01
Chr04	irgsp1_rep	CDS	15499816	15500568	.	-	0	Parent=Os04t0332700-01
Chr04	irgsp1_rep	three_prime_UTR	15499548	15499815	.	-	.	Parent=Os04t0332700-01
Chr04	irgsp1_rep	mRNA	15521721	15523855	.	+	.	ID=Os04t0333300-01;Name=Os04t0333300-01;Locus_id=Os04g0333300;Note=Hypothetical conserved gene.;Transcript_evidence=AK289124 (DDBJ%2C Best hit);ORF_evidence=Q7XK82 (UniProt);NIAS_FLcDNA=J090097O15;TENOR=Os04t0333300-01;KEGG=Os04t0333300-01
Chr04	irgsp1_rep	five_prime_UTR	15521721	15522883	.	+	.	Parent=Os04t0333300-01
Chr04	irgsp1_rep	CDS	15522884	15523276	.	+	0	Parent=Os04t0333300-01
Chr04	irgsp1_rep	three_prime_UTR	15523277	15523855	.	+	.	Parent=Os04t0333300-01
Chr04	irgsp1_rep	mRNA	15528944	15530320	.	+	.	ID=Os04t0333850-00;Name=Os04t0333850-00;Locus_id=Os04g0333850;Note=Non-protein coding transcript.;Transcript_evidence=CT835070 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os04t0333850-00
Chr04	irgsp1_rep	exon	15528944	15529137	.	+	.	Parent=Os04t0333850-00
Chr04	irgsp1_rep	exon	15529810	15529949	.	+	.	Parent=Os04t0333850-00
Chr04	irgsp1_rep	exon	15530032	15530320	.	+	.	Parent=Os04t0333850-00
Chr04	irgsp1_rep	mRNA	15623798	15653865	.	-	.	ID=Os04t0334700-01;Name=Os04t0334700-01;Locus_id=Os04g0334700;Note=Peptidase aspartic%2C catalytic domain containing protein.;Transcript_evidence=AK120870 (DDBJ%2C Best hit);ORF_evidence=B7F2P1 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J023026B03;Expression=AK120870;TENOR=Os04t0334700-01;KEGG=Os04t0334700-01
Chr04	irgsp1_rep	five_prime_UTR	15653787	15653865	.	-	.	Parent=Os04t0334700-01
Chr04	irgsp1_rep	CDS	15653545	15653786	.	-	0	Parent=Os04t0334700-01
Chr04	irgsp1_rep	CDS	15653323	15653452	.	-	1	Parent=Os04t0334700-01
Chr04	irgsp1_rep	CDS	15652934	15653166	.	-	0	Parent=Os04t0334700-01
Chr04	irgsp1_rep	CDS	15650028	15650252	.	-	1	Parent=Os04t0334700-01
Chr04	irgsp1_rep	CDS	15649035	15649200	.	-	1	Parent=Os04t0334700-01
Chr04	irgsp1_rep	CDS	15648882	15648952	.	-	0	Parent=Os04t0334700-01
Chr04	irgsp1_rep	CDS	15648081	15648171	.	-	1	Parent=Os04t0334700-01
Chr04	irgsp1_rep	CDS	15644309	15644378	.	-	0	Parent=Os04t0334700-01
Chr04	irgsp1_rep	CDS	15644155	15644226	.	-	2	Parent=Os04t0334700-01
Chr04	irgsp1_rep	CDS	15623957	15624105	.	-	2	Parent=Os04t0334700-01
Chr04	irgsp1_rep	three_prime_UTR	15623798	15623956	.	-	.	Parent=Os04t0334700-01
Chr04	irgsp1_rep	mRNA	15632138	15653822	.	-	.	ID=Os04t0334700-02;Name=Os04t0334700-02;Locus_id=Os04g0334700;Note=Similar to OSIGBa0137O04.7 protein.;Transcript_evidence=AK109756 (DDBJ%2C Best hit);ORF_evidence=Q01KZ0 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=002-146-G03;Expression=AK109756;TENOR=Os04t0334700-02;KEGG=Os04t0334700-02
Chr04	irgsp1_rep	five_prime_UTR	15653787	15653822	.	-	.	Parent=Os04t0334700-02
Chr04	irgsp1_rep	CDS	15653545	15653786	.	-	0	Parent=Os04t0334700-02
Chr04	irgsp1_rep	CDS	15653323	15653452	.	-	1	Parent=Os04t0334700-02
Chr04	irgsp1_rep	CDS	15652934	15653166	.	-	0	Parent=Os04t0334700-02
Chr04	irgsp1_rep	CDS	15650028	15650252	.	-	1	Parent=Os04t0334700-02
Chr04	irgsp1_rep	CDS	15649035	15649200	.	-	1	Parent=Os04t0334700-02
Chr04	irgsp1_rep	CDS	15648882	15648952	.	-	0	Parent=Os04t0334700-02
Chr04	irgsp1_rep	CDS	15648081	15648171	.	-	1	Parent=Os04t0334700-02
Chr04	irgsp1_rep	CDS	15644309	15644378	.	-	0	Parent=Os04t0334700-02
Chr04	irgsp1_rep	CDS	15644155	15644226	.	-	2	Parent=Os04t0334700-02
Chr04	irgsp1_rep	CDS	15632786	15632787	.	-	2	Parent=Os04t0334700-02
Chr04	irgsp1_rep	three_prime_UTR	15632138	15632785	.	-	.	Parent=Os04t0334700-02
Chr04	irgsp1_rep	mRNA	15637937	15639677	.	+	.	ID=Os04t0334825-00;Name=Os04t0334825-00;Locus_id=Os04g0334825;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7X7R4 (UniProt);TENOR=Os04t0334825-00
Chr04	irgsp1_rep	CDS	15637937	15638238	.	+	0	Parent=Os04t0334825-00
Chr04	irgsp1_rep	CDS	15639563	15639677	.	+	1	Parent=Os04t0334825-00
Chr04	irgsp1_rep	mRNA	15661409	15683093	.	-	.	ID=Os04t0334951-01;Name=Os04t0334951-01;Locus_id=Os04g0334951;Note=Similar to OSIGBa0137O04.7 protein.;Transcript_evidence=AK109756 (DDBJ%2C Best hit);ORF_evidence=Q01KZ0 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=002-146-G03;TENOR=Os04t0334951-01
Chr04	irgsp1_rep	five_prime_UTR	15683058	15683093	.	-	.	Parent=Os04t0334951-01
Chr04	irgsp1_rep	CDS	15682816	15683057	.	-	0	Parent=Os04t0334951-01
Chr04	irgsp1_rep	CDS	15682594	15682723	.	-	1	Parent=Os04t0334951-01
Chr04	irgsp1_rep	CDS	15682205	15682437	.	-	0	Parent=Os04t0334951-01
Chr04	irgsp1_rep	CDS	15679299	15679523	.	-	1	Parent=Os04t0334951-01
Chr04	irgsp1_rep	CDS	15678306	15678471	.	-	1	Parent=Os04t0334951-01
Chr04	irgsp1_rep	CDS	15678153	15678223	.	-	0	Parent=Os04t0334951-01
Chr04	irgsp1_rep	CDS	15677352	15677442	.	-	1	Parent=Os04t0334951-01
Chr04	irgsp1_rep	CDS	15673580	15673649	.	-	0	Parent=Os04t0334951-01
Chr04	irgsp1_rep	CDS	15673426	15673497	.	-	2	Parent=Os04t0334951-01
Chr04	irgsp1_rep	CDS	15662057	15662058	.	-	2	Parent=Os04t0334951-01
Chr04	irgsp1_rep	three_prime_UTR	15661409	15662056	.	-	.	Parent=Os04t0334951-01
Chr04	irgsp1_rep	mRNA	15667208	15668948	.	+	.	ID=Os04t0335075-00;Name=Os04t0335075-00;Locus_id=Os04g0335075;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7X7R4 (UniProt);TENOR=Os04t0335075-00
Chr04	irgsp1_rep	CDS	15667208	15667509	.	+	0	Parent=Os04t0335075-00
Chr04	irgsp1_rep	CDS	15668834	15668948	.	+	1	Parent=Os04t0335075-00
Chr04	irgsp1_rep	mRNA	15688728	15690470	.	+	.	ID=Os04t0335200-01;Name=Os04t0335200-01;Locus_id=Os04g0335200;Note=Conserved hypothetical protein.;Transcript_evidence=AK289258 (DDBJ%2C Best hit);ORF_evidence=Q2QWP9 (UniProt);NIAS_FLcDNA=J100083K01;TENOR=Os04t0335200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	15688728	15688792	.	+	.	Parent=Os04t0335200-01
Chr04	irgsp1_rep	CDS	15688793	15689125	.	+	0	Parent=Os04t0335200-01
Chr04	irgsp1_rep	three_prime_UTR	15689126	15690470	.	+	.	Parent=Os04t0335200-01
Chr04	irgsp1_rep	mRNA	15711275	15711580	.	-	.	ID=Os04t0335400-00;Name=Os04t0335400-00;Locus_id=Os04g0335400;Note=Non-protein coding transcript.;Transcript_evidence=CT828838 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os04t0335400-00
Chr04	irgsp1_rep	exon	15711275	15711580	.	-	.	Parent=Os04t0335400-00
Chr04	irgsp1_rep	mRNA	15732730	15733209	.	-	.	ID=Os04t0336001-00;Name=Os04t0336001-00;Locus_id=Os04g0336001;Note=Hypothetical protein.;Transcript_evidence=EU945299 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0336001-00
Chr04	irgsp1_rep	CDS	15732730	15733209	.	-	0	Parent=Os04t0336001-00
Chr04	irgsp1_rep	mRNA	15786451	15816519	.	-	.	ID=Os04t0336600-00;Name=Os04t0336600-00;Locus_id=Os04g0336600;Note=Peptidase aspartic%2C catalytic domain containing protein.;Transcript_evidence=AK120870 (DDBJ%2C Secondary hit);ORF_evidence=B7F2P1 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);Expression=AK120870;TENOR=Os04t0336600-00;KEGG=Os04t0336600-00
Chr04	irgsp1_rep	five_prime_UTR	15816441	15816519	.	-	.	Parent=Os04t0336600-00
Chr04	irgsp1_rep	CDS	15816199	15816440	.	-	0	Parent=Os04t0336600-00
Chr04	irgsp1_rep	CDS	15815977	15816106	.	-	1	Parent=Os04t0336600-00
Chr04	irgsp1_rep	CDS	15815588	15815820	.	-	0	Parent=Os04t0336600-00
Chr04	irgsp1_rep	CDS	15812682	15812906	.	-	1	Parent=Os04t0336600-00
Chr04	irgsp1_rep	CDS	15811689	15811854	.	-	1	Parent=Os04t0336600-00
Chr04	irgsp1_rep	CDS	15811536	15811606	.	-	0	Parent=Os04t0336600-00
Chr04	irgsp1_rep	CDS	15810735	15810825	.	-	1	Parent=Os04t0336600-00
Chr04	irgsp1_rep	CDS	15806963	15807032	.	-	0	Parent=Os04t0336600-00
Chr04	irgsp1_rep	CDS	15806809	15806880	.	-	2	Parent=Os04t0336600-00
Chr04	irgsp1_rep	CDS	15786610	15786758	.	-	2	Parent=Os04t0336600-00
Chr04	irgsp1_rep	three_prime_UTR	15786451	15786609	.	-	.	Parent=Os04t0336600-00
Chr04	irgsp1_rep	mRNA	15800590	15802330	.	+	.	ID=Os04t0336700-00;Name=Os04t0336700-00;Locus_id=Os04g0336700;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7X7R4 (UniProt);TENOR=Os04t0336700-00
Chr04	irgsp1_rep	CDS	15800590	15800891	.	+	0	Parent=Os04t0336700-00
Chr04	irgsp1_rep	CDS	15802216	15802330	.	+	1	Parent=Os04t0336700-00
Chr04	irgsp1_rep	mRNA	15822077	15823819	.	+	.	ID=Os04t0336801-00;Name=Os04t0336801-00;Locus_id=Os04g0336801;Note=Conserved hypothetical protein.;Transcript_evidence=AK289258 (DDBJ%2C Secondary hit);ORF_evidence=Q2QWP9 (UniProt);TENOR=Os04t0336801-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	15822077	15822141	.	+	.	Parent=Os04t0336801-00
Chr04	irgsp1_rep	CDS	15822142	15822474	.	+	0	Parent=Os04t0336801-00
Chr04	irgsp1_rep	three_prime_UTR	15822475	15823819	.	+	.	Parent=Os04t0336801-00
Chr04	irgsp1_rep	mRNA	15844577	15853761	.	-	.	ID=Os04t0337000-01;Name=Os04t0337000-01;Locus_id=Os04g0337000;Oryzabase Gene Symbol Synonym(s)=OsSTA120;Note=Peptidase aspartic%2C catalytic domain containing protein.;Transcript_evidence=AK066236 (DDBJ%2C Best hit);ORF_evidence=Q01KZ0 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J013057F13;Oryzabase=19410;Expression=AK066236;TENOR=Os04t0337000-01;KEGG=Os04t0337000-01
Chr04	irgsp1_rep	five_prime_UTR	15853761	15853761	.	-	.	Parent=Os04t0337000-01
Chr04	irgsp1_rep	CDS	15853669	15853760	.	-	0	Parent=Os04t0337000-01
Chr04	irgsp1_rep	CDS	15853002	15853131	.	-	1	Parent=Os04t0337000-01
Chr04	irgsp1_rep	CDS	15852669	15852916	.	-	0	Parent=Os04t0337000-01
Chr04	irgsp1_rep	CDS	15851824	15852048	.	-	1	Parent=Os04t0337000-01
Chr04	irgsp1_rep	CDS	15849125	15849287	.	-	1	Parent=Os04t0337000-01
Chr04	irgsp1_rep	CDS	15848927	15849032	.	-	0	Parent=Os04t0337000-01
Chr04	irgsp1_rep	CDS	15848608	15848609	.	-	2	Parent=Os04t0337000-01
Chr04	irgsp1_rep	three_prime_UTR	15845558	15848607	.	-	.	Parent=Os04t0337000-01
Chr04	irgsp1_rep	three_prime_UTR	15845377	15845448	.	-	.	Parent=Os04t0337000-01
Chr04	irgsp1_rep	three_prime_UTR	15844577	15845042	.	-	.	Parent=Os04t0337000-01
Chr04	irgsp1_rep	mRNA	15865222	15876286	.	+	.	ID=Os04t0337201-00;Name=Os04t0337201-00;Locus_id=Os04g0337201;Note=Similar to OSIGBa0137O04.8 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01KY9 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Molecular Function: binding (GO:0005488),Molecular Function: protein transporter activity (GO:0008565);InterPro=Importin-beta%2C N-terminal (IPR001494),Armadillo-like helical (IPR011989),Exportin/Importin%2C Cse1-like (IPR013713),Armadillo-type fold (IPR016024);TENOR=Os04t0337201-00;KEGG=Os04t0337201-00
Chr04	irgsp1_rep	CDS	15865222	15865311	.	+	0	Parent=Os04t0337201-00
Chr04	irgsp1_rep	CDS	15867121	15867256	.	+	0	Parent=Os04t0337201-00
Chr04	irgsp1_rep	CDS	15867326	15867413	.	+	2	Parent=Os04t0337201-00
Chr04	irgsp1_rep	CDS	15868187	15868339	.	+	1	Parent=Os04t0337201-00
Chr04	irgsp1_rep	CDS	15868727	15868889	.	+	1	Parent=Os04t0337201-00
Chr04	irgsp1_rep	CDS	15868959	15869143	.	+	0	Parent=Os04t0337201-00
Chr04	irgsp1_rep	CDS	15869209	15869382	.	+	1	Parent=Os04t0337201-00
Chr04	irgsp1_rep	CDS	15869735	15869880	.	+	1	Parent=Os04t0337201-00
Chr04	irgsp1_rep	CDS	15870011	15870134	.	+	2	Parent=Os04t0337201-00
Chr04	irgsp1_rep	CDS	15870215	15870395	.	+	1	Parent=Os04t0337201-00
Chr04	irgsp1_rep	CDS	15871499	15871658	.	+	0	Parent=Os04t0337201-00
Chr04	irgsp1_rep	CDS	15871748	15871789	.	+	2	Parent=Os04t0337201-00
Chr04	irgsp1_rep	CDS	15871862	15871980	.	+	2	Parent=Os04t0337201-00
Chr04	irgsp1_rep	CDS	15872061	15872259	.	+	0	Parent=Os04t0337201-00
Chr04	irgsp1_rep	CDS	15872776	15872907	.	+	2	Parent=Os04t0337201-00
Chr04	irgsp1_rep	CDS	15874059	15874162	.	+	2	Parent=Os04t0337201-00
Chr04	irgsp1_rep	CDS	15874263	15874442	.	+	0	Parent=Os04t0337201-00
Chr04	irgsp1_rep	CDS	15876089	15876286	.	+	0	Parent=Os04t0337201-00
Chr04	irgsp1_rep	mRNA	15879378	15879964	.	+	.	ID=Os04t0337300-01;Name=Os04t0337300-01;Locus_id=Os04g0337300;Note=Similar to OSIGBa0137O04.8 protein.;Transcript_evidence=AK060427 (DDBJ%2C Best hit);ORF_evidence=Q01KY9 (UniProt);NIAS_FLcDNA=001-011-A01;Expression=AK060427;TENOR=Os04t0337300-01;KEGG=Os04t0337300-01
Chr04	irgsp1_rep	five_prime_UTR	15879378	15879378	.	+	.	Parent=Os04t0337300-01
Chr04	irgsp1_rep	CDS	15879379	15879415	.	+	0	Parent=Os04t0337300-01
Chr04	irgsp1_rep	CDS	15879503	15879654	.	+	2	Parent=Os04t0337300-01
Chr04	irgsp1_rep	three_prime_UTR	15879655	15879964	.	+	.	Parent=Os04t0337300-01
Chr04	irgsp1_rep	mRNA	15888816	15893913	.	+	.	ID=Os04t0337500-01;Name=Os04t0337500-01;Locus_id=Os04g0337500;Note=Aldo/keto reductase family protein.;Transcript_evidence=AK068652 (DDBJ%2C Best hit),AK104524 (DDBJ%2C Best hit);ORF_evidence=Q01KV1 (UniProt);InterPro=Aldo/keto reductase (IPR001395),NADP-dependent oxidoreductase domain (IPR023210);NIAS_FLcDNA=J013160A22,006-303-G01;TENOR=Os04t0337500-01
Chr04	irgsp1_rep	five_prime_UTR	15888816	15888853	.	+	.	Parent=Os04t0337500-01
Chr04	irgsp1_rep	CDS	15888854	15889087	.	+	0	Parent=Os04t0337500-01
Chr04	irgsp1_rep	CDS	15889193	15889396	.	+	0	Parent=Os04t0337500-01
Chr04	irgsp1_rep	CDS	15892251	15892420	.	+	0	Parent=Os04t0337500-01
Chr04	irgsp1_rep	CDS	15892505	15892610	.	+	1	Parent=Os04t0337500-01
Chr04	irgsp1_rep	CDS	15893220	15893558	.	+	0	Parent=Os04t0337500-01
Chr04	irgsp1_rep	three_prime_UTR	15893559	15893913	.	+	.	Parent=Os04t0337500-01
Chr04	irgsp1_rep	mRNA	15889234	15893886	.	+	.	ID=Os04t0337500-02;Name=Os04t0337500-02;Locus_id=Os04g0337500;Note=Similar to OSIGBa0115A19.1 protein.;Transcript_evidence=AK061807 (DDBJ%2C Best hit);ORF_evidence=Q01KV1 (UniProt);InterPro=Aldo/keto reductase (IPR001395),NADP-dependent oxidoreductase domain (IPR023210);NIAS_FLcDNA=001-040-A04;Expression=AK061807;TENOR=Os04t0337500-02;KEGG=Os04t0337500-02
Chr04	irgsp1_rep	five_prime_UTR	15889234	15889234	.	+	.	Parent=Os04t0337500-02
Chr04	irgsp1_rep	CDS	15889235	15889396	.	+	0	Parent=Os04t0337500-02
Chr04	irgsp1_rep	CDS	15892251	15892420	.	+	0	Parent=Os04t0337500-02
Chr04	irgsp1_rep	CDS	15892505	15892610	.	+	1	Parent=Os04t0337500-02
Chr04	irgsp1_rep	CDS	15893220	15893558	.	+	0	Parent=Os04t0337500-02
Chr04	irgsp1_rep	three_prime_UTR	15893559	15893886	.	+	.	Parent=Os04t0337500-02
Chr04	irgsp1_rep	mRNA	15904657	15911580	.	+	.	ID=Os04t0337800-00;Name=Os04t0337800-00;Locus_id=Os04g0337800;Note=Similar to IN2-2 protein.;Transcript_evidence=EU954077 (DDBJ);ORF_evidence=B6SMW2 (UniProt);InterPro=Aldo/keto reductase (IPR001395),NADP-dependent oxidoreductase domain (IPR023210);TENOR=Os04t0337800-00;KEGG=Os04t0337800-00
Chr04	irgsp1_rep	CDS	15904657	15904890	.	+	0	Parent=Os04t0337800-00
Chr04	irgsp1_rep	CDS	15905027	15905230	.	+	0	Parent=Os04t0337800-00
Chr04	irgsp1_rep	CDS	15911222	15911560	.	+	0	Parent=Os04t0337800-00
Chr04	irgsp1_rep	three_prime_UTR	15911561	15911580	.	+	.	Parent=Os04t0337800-00
Chr04	irgsp1_rep	mRNA	15915699	15918901	.	+	.	ID=Os04t0338000-01;Name=Os04t0338000-01;Locus_id=Os04g0338000;CGSNL Gene Symbol=ARK4;CGSNL Gene Name=ALDO/KETO REDUCTASE 4;Oryzabase Gene Symbol Synonym(s)=OsARK4;Oryzabase Gene Name Synonym(s)=Aldo-Keto Reductase%2C aldo/keto reductase 4;Note=Similar to IN2-2 protein.;Transcript_evidence=AK099774 (DDBJ%2C Best hit),AK061686 (DDBJ%2C Best hit);ORF_evidence=Q01KU8 (UniProt);InterPro=Aldo/keto reductase (IPR001395),NADP-dependent oxidoreductase domain (IPR023210);NIAS_FLcDNA=J013095E15,001-037-B01;Oryzabase=21906;TENOR=Os04t0338000-01
Chr04	irgsp1_rep	five_prime_UTR	15915699	15915732	.	+	.	Parent=Os04t0338000-01
Chr04	irgsp1_rep	CDS	15915733	15915966	.	+	0	Parent=Os04t0338000-01
Chr04	irgsp1_rep	CDS	15916077	15916277	.	+	0	Parent=Os04t0338000-01
Chr04	irgsp1_rep	CDS	15917387	15917559	.	+	0	Parent=Os04t0338000-01
Chr04	irgsp1_rep	CDS	15917644	15917746	.	+	1	Parent=Os04t0338000-01
Chr04	irgsp1_rep	CDS	15918276	15918620	.	+	0	Parent=Os04t0338000-01
Chr04	irgsp1_rep	three_prime_UTR	15918621	15918901	.	+	.	Parent=Os04t0338000-01
Chr04	irgsp1_rep	mRNA	15924375	15928109	.	+	.	ID=Os04t0338100-01;Name=Os04t0338100-01;Locus_id=Os04g0338100;Note=Similar to IN2-2 protein.;Transcript_evidence=AK105093 (DDBJ%2C Best hit);ORF_evidence=Q01KU8 (UniProt);InterPro=NADP-dependent oxidoreductase domain (IPR023210);NIAS_FLcDNA=001-100-A01;Expression=AK105093;TENOR=Os04t0338100-01;KEGG=Os04t0338100-01
Chr04	irgsp1_rep	five_prime_UTR	15924375	15924375	.	+	.	Parent=Os04t0338100-01
Chr04	irgsp1_rep	CDS	15924376	15924468	.	+	0	Parent=Os04t0338100-01
Chr04	irgsp1_rep	CDS	15924915	15924989	.	+	0	Parent=Os04t0338100-01
Chr04	irgsp1_rep	CDS	15926974	15927144	.	+	0	Parent=Os04t0338100-01
Chr04	irgsp1_rep	three_prime_UTR	15927145	15927305	.	+	.	Parent=Os04t0338100-01
Chr04	irgsp1_rep	three_prime_UTR	15927533	15928109	.	+	.	Parent=Os04t0338100-01
Chr04	irgsp1_rep	mRNA	15986497	15989460	.	-	.	ID=Os04t0338950-00;Name=Os04t0338950-00;Locus_id=Os04g0338950;Note=Hypothetical protein.;Transcript_evidence=tplb0024g24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0338950-00
Chr04	irgsp1_rep	five_prime_UTR	15988935	15989460	.	-	.	Parent=Os04t0338950-00
Chr04	irgsp1_rep	five_prime_UTR	15987261	15987427	.	-	.	Parent=Os04t0338950-00
Chr04	irgsp1_rep	CDS	15986497	15987260	.	-	0	Parent=Os04t0338950-00
Chr04	irgsp1_rep	mRNA	16001505	16005150	.	+	.	ID=Os04t0339400-01;Name=Os04t0339400-01;Locus_id=Os04g0339400;Oryzabase Gene Symbol Synonym(s)=OsAKR%2C AKR;Oryzabase Gene Name Synonym(s)=aldo-keto reductase;Note=Aldo/keto reductase family protein.;Transcript_evidence=AK103553 (DDBJ%2C Best hit);ORF_evidence=Q01LN8 (UniProt);InterPro=Aldo/keto reductase (IPR001395),NADP-dependent oxidoreductase domain (IPR023210);NIAS_FLcDNA=J033132F18;Oryzabase=21630;Expression=AK103553;TENOR=Os04t0339400-01;KEGG=Os04t0339400-01
Chr04	irgsp1_rep	five_prime_UTR	16001505	16001555	.	+	.	Parent=Os04t0339400-01
Chr04	irgsp1_rep	CDS	16001556	16002002	.	+	0	Parent=Os04t0339400-01
Chr04	irgsp1_rep	CDS	16003871	16004043	.	+	0	Parent=Os04t0339400-01
Chr04	irgsp1_rep	CDS	16004419	16004521	.	+	1	Parent=Os04t0339400-01
Chr04	irgsp1_rep	CDS	16004690	16005034	.	+	0	Parent=Os04t0339400-01
Chr04	irgsp1_rep	three_prime_UTR	16005035	16005150	.	+	.	Parent=Os04t0339400-01
Chr04	irgsp1_rep	mRNA	16021939	16023733	.	-	.	ID=Os04t0339800-00;Name=Os04t0339800-00;Locus_id=Os04g0339800;Note=Similar to predicted protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001154222.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os04t0339800-00;KEGG=Os04t0339800-00 (EC:2.7.11.25)
Chr04	irgsp1_rep	CDS	16023702	16023733	.	-	0	Parent=Os04t0339800-00
Chr04	irgsp1_rep	CDS	16022957	16023032	.	-	1	Parent=Os04t0339800-00
Chr04	irgsp1_rep	CDS	16022297	16022404	.	-	0	Parent=Os04t0339800-00
Chr04	irgsp1_rep	CDS	16021939	16022130	.	-	0	Parent=Os04t0339800-00
Chr04	irgsp1_rep	mRNA	16044638	16046020	.	-	.	ID=Os04t0340100-00;Name=Os04t0340100-00;Locus_id=Os04g0340100;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FEH9 (UniProt);TENOR=Os04t0340100-00;KEGG=Os04t0340100-00
Chr04	irgsp1_rep	CDS	16045617	16046020	.	-	0	Parent=Os04t0340100-00
Chr04	irgsp1_rep	CDS	16044638	16044920	.	-	1	Parent=Os04t0340100-00
Chr04	irgsp1_rep	mRNA	16057969	16068256	.	-	.	ID=Os04t0340300-01;Name=Os04t0340300-01;Locus_id=Os04g0340300;RAP-DB Gene Symbol Synonym(s)=OsTPS19;RAP-DB Gene Name Synonym(s)=terpene synthase 19;Oryzabase Gene Symbol Synonym(s)=OsTPS19%2C TPS19;Oryzabase Gene Name Synonym(s)=terpene synthase 19;Note=Terpene synthase%2C (S)-limonene synthase%2C Defence against M. oryzae;Transcript_evidence=AK071447;ORF_evidence=Q0JE23;GO=Biological Process: metabolic process (GO:0008152),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: terpene synthase activity (GO:0010333),Molecular Function: lyase activity (GO:0016829);InterPro=Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid (IPR008930),Terpene synthase%2C N-terminal domain superfamily (IPR036965),Isoprenoid synthase domain superfamily (IPR008949),Terpene synthase%2C N-terminal domain (IPR001906),Terpene synthase%2C metal-binding domain (IPR005630),Terpene cyclase-like 1%2C C-terminal domain (IPR034741);NIAS_FLcDNA=J023097D21;Manual Curation=April 17%2C 2018;Literature_PMID=29509987;Oryzabase=18715;Expression=AK071447;TENOR=Os04t0340300-01;KEGG=Os04t0340300-01;Subcellular location=plastid (GO:0009536)
Chr04	irgsp1_rep	five_prime_UTR	16068182	16068256	.	-	.	Parent=Os04t0340300-01
Chr04	irgsp1_rep	CDS	16067918	16068181	.	-	0	Parent=Os04t0340300-01
Chr04	irgsp1_rep	CDS	16066751	16067009	.	-	0	Parent=Os04t0340300-01
Chr04	irgsp1_rep	CDS	16065833	16066211	.	-	2	Parent=Os04t0340300-01
Chr04	irgsp1_rep	CDS	16064346	16064564	.	-	1	Parent=Os04t0340300-01
Chr04	irgsp1_rep	CDS	16061603	16061738	.	-	1	Parent=Os04t0340300-01
Chr04	irgsp1_rep	CDS	16059036	16059284	.	-	0	Parent=Os04t0340300-01
Chr04	irgsp1_rep	CDS	16058200	16058493	.	-	0	Parent=Os04t0340300-01
Chr04	irgsp1_rep	three_prime_UTR	16057969	16058199	.	-	.	Parent=Os04t0340300-01
Chr04	irgsp1_rep	mRNA	16059772	16061602	.	-	.	ID=Os04t0340550-01;Name=Os04t0340550-01;Locus_id=Os04g0340550;Note=Hypothetical gene.;Transcript_evidence=AK068264 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013149P15;TENOR=Os04t0340550-01;KEGG=Os04t0340550-01
Chr04	irgsp1_rep	five_prime_UTR	16060893	16061602	.	-	.	Parent=Os04t0340550-01
Chr04	irgsp1_rep	CDS	16060677	16060892	.	-	0	Parent=Os04t0340550-01
Chr04	irgsp1_rep	three_prime_UTR	16059772	16060676	.	-	.	Parent=Os04t0340550-01
Chr04	irgsp1_rep	mRNA	16099448	16102378	.	+	.	ID=Os04t0340800-01;Name=Os04t0340800-01;Locus_id=Os04g0340800;Note=Conserved hypothetical protein.;Transcript_evidence=AK121548 (DDBJ%2C Best hit);ORF_evidence=B9FEI1 (UniProt);NIAS_FLcDNA=J033032L05;Expression=AK121548;TENOR=Os04t0340800-01;KEGG=Os04t0340800-01
Chr04	irgsp1_rep	five_prime_UTR	16099448	16099589	.	+	.	Parent=Os04t0340800-01
Chr04	irgsp1_rep	five_prime_UTR	16099981	16100730	.	+	.	Parent=Os04t0340800-01
Chr04	irgsp1_rep	CDS	16100731	16100784	.	+	0	Parent=Os04t0340800-01
Chr04	irgsp1_rep	CDS	16101487	16101552	.	+	0	Parent=Os04t0340800-01
Chr04	irgsp1_rep	CDS	16101672	16101719	.	+	0	Parent=Os04t0340800-01
Chr04	irgsp1_rep	CDS	16101806	16101902	.	+	0	Parent=Os04t0340800-01
Chr04	irgsp1_rep	CDS	16102127	16102131	.	+	2	Parent=Os04t0340800-01
Chr04	irgsp1_rep	three_prime_UTR	16102132	16102378	.	+	.	Parent=Os04t0340800-01
Chr04	irgsp1_rep	mRNA	16099497	16102393	.	+	.	ID=Os04t0340800-02;Name=Os04t0340800-02;Locus_id=Os04g0340800;Note=Conserved hypothetical protein.;Transcript_evidence=AK065155 (DDBJ%2C Best hit);ORF_evidence=B9FW60 (UniProt);NIAS_FLcDNA=J013002B19;TENOR=Os04t0340800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	16099497	16100878	.	+	.	Parent=Os04t0340800-02
Chr04	irgsp1_rep	CDS	16100879	16101118	.	+	0	Parent=Os04t0340800-02
Chr04	irgsp1_rep	three_prime_UTR	16101119	16101719	.	+	.	Parent=Os04t0340800-02
Chr04	irgsp1_rep	three_prime_UTR	16101806	16102393	.	+	.	Parent=Os04t0340800-02
Chr04	irgsp1_rep	mRNA	16130015	16130392	.	+	.	ID=Os04t0341100-00;Name=Os04t0341100-00;Locus_id=Os04g0341100;Note=Similar to OSIGBa0159H11-OSIGBa0137A07.5 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01HV4 (UniProt);InterPro=Aldo/keto reductase (IPR001395),NADP-dependent oxidoreductase domain (IPR023210);TENOR=Os04t0341100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	16130015	16130392	.	+	0	Parent=Os04t0341100-00
Chr04	irgsp1_rep	mRNA	16153192	16158082	.	-	.	ID=Os04t0341500-01;Name=Os04t0341500-01;Locus_id=Os04g0341500;Oryzabase Gene Symbol Synonym(s)=OsTPS20%2C TPS20;Oryzabase Gene Name Synonym(s)=terpene synthase 20;Note=Similar to OSIGBa0159H11-OSIGBa0137A07.8 protein.;Transcript_evidence=AK289110 (DDBJ%2C Best hit);ORF_evidence=Q01HV1 (UniProt);GO=Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: lyase activity (GO:0016829);InterPro=Terpene synthase%2C metal-binding domain (IPR005630),Terpenoid synthase (IPR008949);NIAS_FLcDNA=J090096N10;Oryzabase=18716;TENOR=Os04t0341500-01;KEGG=Os04t0341500-01
Chr04	irgsp1_rep	five_prime_UTR	16158051	16158082	.	-	.	Parent=Os04t0341500-01
Chr04	irgsp1_rep	CDS	16157754	16158050	.	-	0	Parent=Os04t0341500-01
Chr04	irgsp1_rep	three_prime_UTR	16153192	16157753	.	-	.	Parent=Os04t0341500-01
Chr04	irgsp1_rep	mRNA	16151639	16162828	.	-	.	ID=Os04t0341500-02;Name=Os04t0341500-02;Locus_id=Os04g0341500;RAP-DB Gene Symbol Synonym(s)=OsTPS20;RAP-DB Gene Name Synonym(s)=terpene synthase 20;Oryzabase Gene Symbol Synonym(s)=OsTPS20%2C TPS20;Oryzabase Gene Name Synonym(s)=terpene synthase 20;Note=Terpene synthase%2C (S)-limonene synthase%2C Response to abiotic stress%2C Suppression of a rice bacterial blight;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Biological Process: metabolic process (GO:0008152),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: terpene synthase activity (GO:0010333),Molecular Function: lyase activity (GO:0016829);InterPro=Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid (IPR008930),Terpene synthase%2C N-terminal domain superfamily (IPR036965),Isoprenoid synthase domain superfamily (IPR008949),Terpene synthase%2C N-terminal domain (IPR001906),Terpene synthase%2C metal-binding domain (IPR005630),Terpene cyclase-like 1%2C C-terminal domain (IPR034741);Manual Curation=April 18%2C 2018;Literature_PMID=29509987,26530963,25430981;Oryzabase=18716;Subcellular location=plastid (GO:0009536)
Chr04	irgsp1_rep	CDS	16162565	16162828	.	-	0	Parent=Os04t0341500-02
Chr04	irgsp1_rep	CDS	16160173	16160431	.	-	0	Parent=Os04t0341500-02
Chr04	irgsp1_rep	CDS	16159251	16159629	.	-	2	Parent=Os04t0341500-02
Chr04	irgsp1_rep	CDS	16157764	16157982	.	-	1	Parent=Os04t0341500-02
Chr04	irgsp1_rep	CDS	16155023	16155158	.	-	1	Parent=Os04t0341500-02
Chr04	irgsp1_rep	CDS	16152460	16152708	.	-	0	Parent=Os04t0341500-02
Chr04	irgsp1_rep	CDS	16151639	16151932	.	-	0	Parent=Os04t0341500-02
Chr04	irgsp1_rep	mRNA	16199049	16201897	.	-	.	ID=Os04t0341900-00;Name=Os04t0341900-00;Locus_id=Os04g0341900;Note=Similar to OSIGBa0159H11-OSIGBa0137A07.10 protein.;Transcript_evidence=AK334717 (DDBJ);ORF_evidence=Q01HU9 (UniProt);TENOR=Os04t0341900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	16201871	16201897	.	-	.	Parent=Os04t0341900-00
Chr04	irgsp1_rep	CDS	16201638	16201870	.	-	0	Parent=Os04t0341900-00
Chr04	irgsp1_rep	CDS	16199685	16199772	.	-	1	Parent=Os04t0341900-00
Chr04	irgsp1_rep	CDS	16199049	16199531	.	-	0	Parent=Os04t0341900-00
Chr04	irgsp1_rep	mRNA	16214063	16218619	.	-	.	ID=Os04t0342100-01;Name=Os04t0342100-01;Locus_id=Os04g0342100;RAP-DB Gene Symbol Synonym(s)=OsSTPS2;RAP-DB Gene Name Synonym(s)=sesquiterpene synthase 2;Oryzabase Gene Symbol Synonym(s)=STPS%2C OsSTPS%2C OsSTPS2%2C STPS2;Oryzabase Gene Name Synonym(s)=sesquiterpene synthase%2C sesquiterpene synthase 2;Note=Sesquiterpene synthase%2C Brown planthopper (BPH) resistance;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: terpene synthase activity (GO:0010333),Molecular Function: lyase activity (GO:0016829);InterPro=Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid (IPR008930),Terpene synthase%2C N-terminal domain superfamily (IPR036965),Isoprenoid synthase domain superfamily (IPR008949),Terpene synthase%2C N-terminal domain (IPR001906),Terpene synthase%2C metal-binding domain (IPR005630);Manual Curation=April 11%2C 2019;Literature_PMID=30888525;Oryzabase=19650
Chr04	irgsp1_rep	CDS	16218376	16218619	.	-	0	Parent=Os04t0342100-01
Chr04	irgsp1_rep	CDS	16216780	16217080	.	-	2	Parent=Os04t0342100-01
Chr04	irgsp1_rep	CDS	16216267	16216485	.	-	1	Parent=Os04t0342100-01
Chr04	irgsp1_rep	CDS	16214853	16214988	.	-	1	Parent=Os04t0342100-01
Chr04	irgsp1_rep	CDS	16214504	16214728	.	-	0	Parent=Os04t0342100-01
Chr04	irgsp1_rep	CDS	16214063	16214353	.	-	0	Parent=Os04t0342100-01
Chr04	irgsp1_rep	mRNA	16289053	16289534	.	-	.	ID=Os04t0343050-00;Name=Os04t0343050-00;Locus_id=Os04g0343050;Note=Similar to CytoChrome c oxidase subunit 2.;Transcript_evidence=X52867 (DDBJ);ORF_evidence=Q37697 (UniProt);GO=Biological Process: electron transport chain (GO:0022900),Biological Process: respiratory electron transport chain (GO:0022904),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: cytoChrome-c oxidase activity (GO:0004129),Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome c oxidase subunit II C-terminal (IPR002429),CytoChrome C oxidase subunit II%2C transmembrane domain (IPR011759),CytoChrome C oxidase subunit II-like%2C transmembrane domain (IPR015964);TENOR=Os04t0343050-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	16289443	16289534	.	-	.	Parent=Os04t0343050-00
Chr04	irgsp1_rep	CDS	16289053	16289442	.	-	0	Parent=Os04t0343050-00
Chr04	irgsp1_rep	mRNA	16345977	16347180	.	+	.	ID=Os04t0343900-01;Name=Os04t0343900-01;Locus_id=Os04g0343900;Note=Conserved hypothetical protein.;Transcript_evidence=AK107841 (DDBJ%2C Best hit);ORF_evidence=Q8LN66 (UniProt);NIAS_FLcDNA=002-133-H10;Expression=AK107841;TENOR=Os04t0343900-01;KEGG=Os04t0343900-01
Chr04	irgsp1_rep	five_prime_UTR	16345977	16345977	.	+	.	Parent=Os04t0343900-01
Chr04	irgsp1_rep	CDS	16345978	16346217	.	+	0	Parent=Os04t0343900-01
Chr04	irgsp1_rep	three_prime_UTR	16346218	16346231	.	+	.	Parent=Os04t0343900-01
Chr04	irgsp1_rep	three_prime_UTR	16346896	16347180	.	+	.	Parent=Os04t0343900-01
Chr04	irgsp1_rep	mRNA	16349941	16354016	.	-	.	ID=Os04t0344100-01;Name=Os04t0344100-01;Locus_id=Os04g0344100;Note=Similar to OSIGBa0106G08.3 protein.;Transcript_evidence=AK241330 (DDBJ%2C Best hit);ORF_evidence=Q01L21 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: lyase activity (GO:0016829);InterPro=Terpene synthase-like (IPR001906),Terpene synthase%2C metal-binding domain (IPR005630),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930),Terpenoid synthase (IPR008949);NIAS_FLcDNA=J065144B19;TENOR=Os04t0344100-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	16353886	16354016	.	-	.	Parent=Os04t0344100-01
Chr04	irgsp1_rep	CDS	16353787	16353885	.	-	0	Parent=Os04t0344100-01
Chr04	irgsp1_rep	CDS	16353414	16353672	.	-	0	Parent=Os04t0344100-01
Chr04	irgsp1_rep	CDS	16352715	16353093	.	-	2	Parent=Os04t0344100-01
Chr04	irgsp1_rep	CDS	16352059	16352277	.	-	1	Parent=Os04t0344100-01
Chr04	irgsp1_rep	CDS	16351515	16351650	.	-	1	Parent=Os04t0344100-01
Chr04	irgsp1_rep	CDS	16351022	16351270	.	-	0	Parent=Os04t0344100-01
Chr04	irgsp1_rep	CDS	16350318	16350608	.	-	0	Parent=Os04t0344100-01
Chr04	irgsp1_rep	three_prime_UTR	16349941	16350317	.	-	.	Parent=Os04t0344100-01
Chr04	irgsp1_rep	mRNA	16380267	16384140	.	-	.	ID=Os04t0344400-00;Name=Os04t0344400-00;Locus_id=Os04g0344400;Oryzabase Gene Symbol Synonym(s)=OsTPS23%2C TPS23;Oryzabase Gene Name Synonym(s)=terpene synthase 23;Note=Similar to OSIGBa0106G08.5 protein.;Transcript_evidence=BT041617 (DDBJ);ORF_evidence=Q01KN9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: lyase activity (GO:0016829);InterPro=Terpene synthase-like (IPR001906),Terpene synthase%2C metal-binding domain (IPR005630),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930),Terpenoid synthase (IPR008949);Oryzabase=18719;TENOR=Os04t0344400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	16383681	16384140	.	-	0	Parent=Os04t0344400-00
Chr04	irgsp1_rep	CDS	16382790	16383168	.	-	2	Parent=Os04t0344400-00
Chr04	irgsp1_rep	CDS	16382105	16382298	.	-	1	Parent=Os04t0344400-00
Chr04	irgsp1_rep	CDS	16381352	16381491	.	-	2	Parent=Os04t0344400-00
Chr04	irgsp1_rep	CDS	16380927	16381175	.	-	0	Parent=Os04t0344400-00
Chr04	irgsp1_rep	CDS	16380267	16380557	.	-	0	Parent=Os04t0344400-00
Chr04	irgsp1_rep	mRNA	16417643	16418224	.	-	.	ID=Os04t0345100-01;Name=Os04t0345100-01;Locus_id=Os04g0345100;Note=Hypothetical gene.;Transcript_evidence=AK062945 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-109-C02;Expression=AK062945;TENOR=Os04t0345100-01;KEGG=Os04t0345100-01
Chr04	irgsp1_rep	CDS	16417754	16418224	.	-	0	Parent=Os04t0345100-01
Chr04	irgsp1_rep	three_prime_UTR	16417643	16417753	.	-	.	Parent=Os04t0345100-01
Chr04	irgsp1_rep	mRNA	16421633	16424891	.	+	.	ID=Os04t0345400-01;Name=Os04t0345400-01;Locus_id=Os04g0345400;Oryzabase Gene Symbol Synonym(s)=OsTPS24%2C TPS24;Oryzabase Gene Name Synonym(s)=terpene synthase 24;Note=Similar to OSIGBa0106G08.7 protein.;Transcript_evidence=AK062280 (DDBJ%2C Best hit);ORF_evidence=Q01KN7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: lyase activity (GO:0016829);InterPro=Terpene synthase-like (IPR001906),Terpene synthase%2C metal-binding domain (IPR005630),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930),Terpenoid synthase (IPR008949);NIAS_FLcDNA=001-100-C03;Oryzabase=18720;TENOR=Os04t0345400-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	16421633	16421894	.	+	0	Parent=Os04t0345400-01
Chr04	irgsp1_rep	CDS	16422383	16422761	.	+	2	Parent=Os04t0345400-01
Chr04	irgsp1_rep	CDS	16422998	16423216	.	+	1	Parent=Os04t0345400-01
Chr04	irgsp1_rep	CDS	16423314	16423449	.	+	1	Parent=Os04t0345400-01
Chr04	irgsp1_rep	CDS	16423972	16424217	.	+	0	Parent=Os04t0345400-01
Chr04	irgsp1_rep	CDS	16424503	16424793	.	+	0	Parent=Os04t0345400-01
Chr04	irgsp1_rep	three_prime_UTR	16424794	16424891	.	+	.	Parent=Os04t0345400-01
Chr04	irgsp1_rep	mRNA	16421894	16424929	.	+	.	ID=Os04t0345400-02;Name=Os04t0345400-02;Locus_id=Os04g0345400;Oryzabase Gene Symbol Synonym(s)=OsTPS24%2C TPS24;Oryzabase Gene Name Synonym(s)=terpene synthase 24;Note=Similar to OSIGBa0106G08.7 protein.;Transcript_evidence=AK121131 (DDBJ%2C Best hit);ORF_evidence=Q01KN7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: lyase activity (GO:0016829);InterPro=Terpene synthase-like (IPR001906),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930),Terpenoid synthase (IPR008949);NIAS_FLcDNA=J023075F22;Oryzabase=18720;Expression=AK121131;TENOR=Os04t0345400-02;KEGG=Os04t0345400-02
Chr04	irgsp1_rep	five_prime_UTR	16421894	16422366	.	+	.	Parent=Os04t0345400-02
Chr04	irgsp1_rep	CDS	16422367	16422873	.	+	0	Parent=Os04t0345400-02
Chr04	irgsp1_rep	three_prime_UTR	16422874	16424929	.	+	.	Parent=Os04t0345400-02
Chr04	irgsp1_rep	mRNA	16436027	16436610	.	+	.	ID=Os04t0345700-00;Name=Os04t0345700-00;Locus_id=Os04g0345700;Note=Non-protein coding transcript.;Transcript_evidence=CT835555 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os04t0345700-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	exon	16436027	16436076	.	+	.	Parent=Os04t0345700-00
Chr04	irgsp1_rep	exon	16436230	16436392	.	+	.	Parent=Os04t0345700-00
Chr04	irgsp1_rep	exon	16436409	16436610	.	+	.	Parent=Os04t0345700-00
Chr04	irgsp1_rep	mRNA	16442063	16445999	.	+	.	ID=Os04t0345800-00;Name=Os04t0345800-00;Locus_id=Os04g0345800;Note=Similar to OSIGBa0127B24.5 protein.;Transcript_evidence=FP099438 (DDBJ);ORF_evidence=Q01KN6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: acireductone dioxygenase [iron(II)-requiring] activity (GO:0010309);InterPro=Acireductone dioxygenase ARD family (IPR004313),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710);TENOR=Os04t0345800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	16442063	16442308	.	+	0	Parent=Os04t0345800-00
Chr04	irgsp1_rep	CDS	16442916	16443036	.	+	0	Parent=Os04t0345800-00
Chr04	irgsp1_rep	CDS	16443227	16443321	.	+	2	Parent=Os04t0345800-00
Chr04	irgsp1_rep	CDS	16445132	16445246	.	+	0	Parent=Os04t0345800-00
Chr04	irgsp1_rep	CDS	16445367	16445491	.	+	2	Parent=Os04t0345800-00
Chr04	irgsp1_rep	CDS	16445889	16445999	.	+	0	Parent=Os04t0345800-00
Chr04	irgsp1_rep	mRNA	16449496	16456317	.	+	.	ID=Os04t0346000-01;Name=Os04t0346000-01;Locus_id=Os04g0346000;Note=2OG-Fe(II) oxygenase domain containing protein.;Transcript_evidence=AK064621 (DDBJ%2C Best hit);ORF_evidence=Q01L65 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706),Molecular Function: L-ascorbic acid binding (GO:0031418);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123),Prolyl 4-hydroxylase%2C alpha subunit (IPR006620);NIAS_FLcDNA=002-113-D10;Expression=AK064621;TENOR=Os04t0346000-01;KEGG=Os04t0346000-01 (EC:1.14.11.2)
Chr04	irgsp1_rep	five_prime_UTR	16449496	16449642	.	+	.	Parent=Os04t0346000-01
Chr04	irgsp1_rep	CDS	16449643	16449715	.	+	0	Parent=Os04t0346000-01
Chr04	irgsp1_rep	CDS	16450557	16450604	.	+	2	Parent=Os04t0346000-01
Chr04	irgsp1_rep	CDS	16450914	16450966	.	+	2	Parent=Os04t0346000-01
Chr04	irgsp1_rep	CDS	16451928	16451993	.	+	0	Parent=Os04t0346000-01
Chr04	irgsp1_rep	CDS	16452204	16452278	.	+	0	Parent=Os04t0346000-01
Chr04	irgsp1_rep	CDS	16452832	16452906	.	+	0	Parent=Os04t0346000-01
Chr04	irgsp1_rep	CDS	16454037	16454107	.	+	0	Parent=Os04t0346000-01
Chr04	irgsp1_rep	CDS	16454197	16454248	.	+	1	Parent=Os04t0346000-01
Chr04	irgsp1_rep	CDS	16454960	16455049	.	+	0	Parent=Os04t0346000-01
Chr04	irgsp1_rep	CDS	16455858	16455950	.	+	0	Parent=Os04t0346000-01
Chr04	irgsp1_rep	CDS	16456089	16456196	.	+	0	Parent=Os04t0346000-01
Chr04	irgsp1_rep	three_prime_UTR	16456197	16456317	.	+	.	Parent=Os04t0346000-01
Chr04	irgsp1_rep	mRNA	16457952	16459772	.	+	.	ID=Os04t0346100-01;Name=Os04t0346100-01;Locus_id=Os04g0346100;CGSNL Gene Symbol=RPS27;CGSNL Gene Name=RIBOSOMAL PROTEIN S27;Oryzabase Gene Symbol Synonym(s)=OsRPS27;Oryzabase Gene Name Synonym(s)=ribosomal protein S27%2C ribosomal protein small subunit 27;Note=Ribosomal protein S27.;Transcript_evidence=AK068012 (DDBJ%2C Best hit);ORF_evidence=Q01L64 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S27e (IPR000592),Ribosomal protein%2C zinc-binding domain (IPR011332),Ribosomal protein S27e%2C zinc-binding domain (IPR023407);NIAS_FLcDNA=J013129I21;Oryzabase=22187;Expression=AK068012;TENOR=Os04t0346100-01;KEGG=Os04t0346100-01
Chr04	irgsp1_rep	five_prime_UTR	16457952	16458036	.	+	.	Parent=Os04t0346100-01
Chr04	irgsp1_rep	CDS	16458037	16458039	.	+	0	Parent=Os04t0346100-01
Chr04	irgsp1_rep	CDS	16458193	16458294	.	+	0	Parent=Os04t0346100-01
Chr04	irgsp1_rep	CDS	16458379	16458407	.	+	0	Parent=Os04t0346100-01
Chr04	irgsp1_rep	CDS	16459118	16459244	.	+	1	Parent=Os04t0346100-01
Chr04	irgsp1_rep	three_prime_UTR	16459245	16459772	.	+	.	Parent=Os04t0346100-01
Chr04	irgsp1_rep	mRNA	16495037	16497725	.	+	.	ID=Os04t0346800-01;Name=Os04t0346800-01;Locus_id=Os04g0346800;Note=Similar to OSIGBa0111I14.3 protein.;Transcript_evidence=AK109486 (DDBJ%2C Best hit);ORF_evidence=Q01L63 (UniProt);InterPro=NTP pyrophosphohydrolase MazG%2C putative catalytic core (IPR004518),EAR (IPR009039);NIAS_FLcDNA=001-202-H07;TENOR=Os04t0346800-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	16495037	16495212	.	+	.	Parent=Os04t0346800-01
Chr04	irgsp1_rep	CDS	16495213	16495377	.	+	0	Parent=Os04t0346800-01
Chr04	irgsp1_rep	CDS	16497155	16497508	.	+	0	Parent=Os04t0346800-01
Chr04	irgsp1_rep	three_prime_UTR	16497509	16497725	.	+	.	Parent=Os04t0346800-01
Chr04	irgsp1_rep	mRNA	16495123	16497729	.	+	.	ID=Os04t0346800-02;Name=Os04t0346800-02;Locus_id=Os04g0346800;Note=Similar to OSIGBa0111I14.3 protein.;Transcript_evidence=AK101242 (DDBJ%2C Best hit);ORF_evidence=Q01L63 (UniProt);InterPro=NTP pyrophosphohydrolase MazG%2C putative catalytic core (IPR004518),EAR (IPR009039);NIAS_FLcDNA=J033031P14;TENOR=Os04t0346800-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	16495123	16495212	.	+	.	Parent=Os04t0346800-02
Chr04	irgsp1_rep	CDS	16495213	16495377	.	+	0	Parent=Os04t0346800-02
Chr04	irgsp1_rep	CDS	16497155	16497508	.	+	0	Parent=Os04t0346800-02
Chr04	irgsp1_rep	three_prime_UTR	16497509	16497729	.	+	.	Parent=Os04t0346800-02
Chr04	irgsp1_rep	mRNA	16505780	16509590	.	-	.	ID=Os04t0346900-00;Name=Os04t0346900-00;Locus_id=Os04g0346900;Note=Transcriptional factor B3 domain containing protein.;Transcript_evidence=EU943383 (DDBJ);ORF_evidence=Q7XS75 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);TENOR=Os04t0346900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	16509414	16509590	.	-	0	Parent=Os04t0346900-00
Chr04	irgsp1_rep	CDS	16508967	16509255	.	-	0	Parent=Os04t0346900-00
Chr04	irgsp1_rep	CDS	16507957	16508000	.	-	2	Parent=Os04t0346900-00
Chr04	irgsp1_rep	three_prime_UTR	16507911	16507956	.	-	.	Parent=Os04t0346900-00
Chr04	irgsp1_rep	three_prime_UTR	16506816	16507104	.	-	.	Parent=Os04t0346900-00
Chr04	irgsp1_rep	three_prime_UTR	16506407	16506616	.	-	.	Parent=Os04t0346900-00
Chr04	irgsp1_rep	three_prime_UTR	16505780	16506004	.	-	.	Parent=Os04t0346900-00
Chr04	irgsp1_rep	mRNA	16519831	16521452	.	-	.	ID=Os04t0347200-01;Name=Os04t0347200-01;Locus_id=Os04g0347200;Note=Similar to OSIGBa0111I14.7 protein.;Transcript_evidence=AK102369 (DDBJ%2C Best hit);ORF_evidence=Q01L59 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 18%2C catalytic domain (IPR001223),Glycoside hydrolase%2C chitinase active site (IPR001579),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J033091K14;Expression=AK102369;TENOR=Os04t0347200-01;KEGG=Os04t0347200-01 (EC:3.2.1.14)
Chr04	irgsp1_rep	five_prime_UTR	16521379	16521452	.	-	.	Parent=Os04t0347200-01
Chr04	irgsp1_rep	CDS	16520884	16521378	.	-	0	Parent=Os04t0347200-01
Chr04	irgsp1_rep	CDS	16520060	16520470	.	-	0	Parent=Os04t0347200-01
Chr04	irgsp1_rep	three_prime_UTR	16519831	16520059	.	-	.	Parent=Os04t0347200-01
Chr04	irgsp1_rep	mRNA	16530274	16533639	.	+	.	ID=Os04t0347400-00;Name=Os04t0347400-00;Locus_id=Os04g0347400;Note=Transcriptional factor B3 domain containing protein.;Transcript_evidence=EU943383 (DDBJ);ORF_evidence=B8ASH1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);TENOR=Os04t0347400-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	16530274	16530372	.	+	.	Parent=Os04t0347400-00
Chr04	irgsp1_rep	five_prime_UTR	16530513	16530788	.	+	.	Parent=Os04t0347400-00
Chr04	irgsp1_rep	CDS	16530789	16530810	.	+	0	Parent=Os04t0347400-00
Chr04	irgsp1_rep	CDS	16531420	16531508	.	+	2	Parent=Os04t0347400-00
Chr04	irgsp1_rep	CDS	16532236	16532527	.	+	0	Parent=Os04t0347400-00
Chr04	irgsp1_rep	CDS	16532695	16532858	.	+	2	Parent=Os04t0347400-00
Chr04	irgsp1_rep	CDS	16533333	16533485	.	+	0	Parent=Os04t0347400-00
Chr04	irgsp1_rep	three_prime_UTR	16533486	16533639	.	+	.	Parent=Os04t0347400-00
Chr04	irgsp1_rep	mRNA	16538582	16542602	.	+	.	ID=Os04t0347600-01;Name=Os04t0347600-01;Locus_id=Os04g0347600;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK065410 (DDBJ%2C Best hit);ORF_evidence=XP_002864105.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013022P13;Expression=AK065410;TENOR=Os04t0347600-01;KEGG=Os04t0347600-01
Chr04	irgsp1_rep	five_prime_UTR	16538582	16539591	.	+	.	Parent=Os04t0347600-01
Chr04	irgsp1_rep	CDS	16539592	16539771	.	+	0	Parent=Os04t0347600-01
Chr04	irgsp1_rep	CDS	16540030	16540176	.	+	0	Parent=Os04t0347600-01
Chr04	irgsp1_rep	CDS	16540596	16540685	.	+	0	Parent=Os04t0347600-01
Chr04	irgsp1_rep	CDS	16540773	16540897	.	+	0	Parent=Os04t0347600-01
Chr04	irgsp1_rep	CDS	16541066	16541271	.	+	1	Parent=Os04t0347600-01
Chr04	irgsp1_rep	CDS	16541450	16541574	.	+	2	Parent=Os04t0347600-01
Chr04	irgsp1_rep	CDS	16542057	16542254	.	+	0	Parent=Os04t0347600-01
Chr04	irgsp1_rep	three_prime_UTR	16542255	16542602	.	+	.	Parent=Os04t0347600-01
Chr04	irgsp1_rep	mRNA	16547339	16548061	.	+	.	ID=Os04t0347700-01;Name=Os04t0347700-01;Locus_id=Os04g0347700;Note=Similar to OSIGBa0130K07.4 protein.;Transcript_evidence=AK062337 (DDBJ%2C Best hit);ORF_evidence=Q01LK3 (UniProt);NIAS_FLcDNA=001-101-E08;Expression=AK062337;TENOR=Os04t0347700-01;KEGG=Os04t0347700-01
Chr04	irgsp1_rep	five_prime_UTR	16547339	16547340	.	+	.	Parent=Os04t0347700-01
Chr04	irgsp1_rep	CDS	16547341	16547600	.	+	0	Parent=Os04t0347700-01
Chr04	irgsp1_rep	CDS	16547695	16548061	.	+	1	Parent=Os04t0347700-01
Chr04	irgsp1_rep	mRNA	16548299	16550808	.	+	.	ID=Os04t0347800-01;Name=Os04t0347800-01;Locus_id=Os04g0347800;Oryzabase Gene Symbol Synonym(s)=OsSTA121;Note=Similar to OSIGBa0130K07.4 protein.;Transcript_evidence=AK108606 (DDBJ%2C Best hit);ORF_evidence=Q01LK3 (UniProt);NIAS_FLcDNA=002-146-G12;Oryzabase=19411;Expression=AK108606;TENOR=Os04t0347800-01;KEGG=Os04t0347800-01
Chr04	irgsp1_rep	CDS	16548299	16548391	.	+	0	Parent=Os04t0347800-01
Chr04	irgsp1_rep	CDS	16548877	16549157	.	+	0	Parent=Os04t0347800-01
Chr04	irgsp1_rep	CDS	16549230	16549899	.	+	1	Parent=Os04t0347800-01
Chr04	irgsp1_rep	CDS	16550359	16550595	.	+	0	Parent=Os04t0347800-01
Chr04	irgsp1_rep	three_prime_UTR	16550596	16550808	.	+	.	Parent=Os04t0347800-01
Chr04	irgsp1_rep	mRNA	16553231	16559347	.	+	.	ID=Os04t0347900-01;Name=Os04t0347900-01;Locus_id=Os04g0347900;Note=Similar to OSIGBa0130K07.5 protein.;Transcript_evidence=AK102622 (DDBJ%2C Best hit);ORF_evidence=Q01LK2 (UniProt);InterPro=SANT associated (IPR015216);NIAS_FLcDNA=J033099H13;TENOR=Os04t0347900-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	16553231	16553434	.	+	0	Parent=Os04t0347900-01
Chr04	irgsp1_rep	CDS	16553525	16553601	.	+	0	Parent=Os04t0347900-01
Chr04	irgsp1_rep	CDS	16554402	16554546	.	+	1	Parent=Os04t0347900-01
Chr04	irgsp1_rep	CDS	16554837	16555793	.	+	0	Parent=Os04t0347900-01
Chr04	irgsp1_rep	CDS	16556234	16556395	.	+	0	Parent=Os04t0347900-01
Chr04	irgsp1_rep	CDS	16557628	16557741	.	+	0	Parent=Os04t0347900-01
Chr04	irgsp1_rep	CDS	16558325	16558412	.	+	0	Parent=Os04t0347900-01
Chr04	irgsp1_rep	CDS	16558494	16558549	.	+	2	Parent=Os04t0347900-01
Chr04	irgsp1_rep	CDS	16558749	16558803	.	+	0	Parent=Os04t0347900-01
Chr04	irgsp1_rep	CDS	16558916	16558959	.	+	2	Parent=Os04t0347900-01
Chr04	irgsp1_rep	three_prime_UTR	16558960	16559347	.	+	.	Parent=Os04t0347900-01
Chr04	irgsp1_rep	mRNA	16562032	16566396	.	+	.	ID=Os04t0348000-01;Name=Os04t0348000-01;Locus_id=Os04g0348000;Note=Similar to OSIGBa0130K07.6 protein.;Transcript_evidence=AK103735 (DDBJ%2C Best hit);ORF_evidence=Q01LK1 (UniProt);NIAS_FLcDNA=J033138G07;Expression=AK103735;TENOR=Os04t0348000-01;KEGG=Os04t0348000-01
Chr04	irgsp1_rep	five_prime_UTR	16562032	16562226	.	+	.	Parent=Os04t0348000-01
Chr04	irgsp1_rep	five_prime_UTR	16562962	16563137	.	+	.	Parent=Os04t0348000-01
Chr04	irgsp1_rep	CDS	16563138	16563956	.	+	0	Parent=Os04t0348000-01
Chr04	irgsp1_rep	CDS	16565123	16565213	.	+	0	Parent=Os04t0348000-01
Chr04	irgsp1_rep	CDS	16565301	16565356	.	+	2	Parent=Os04t0348000-01
Chr04	irgsp1_rep	CDS	16565857	16565905	.	+	0	Parent=Os04t0348000-01
Chr04	irgsp1_rep	CDS	16566026	16566108	.	+	2	Parent=Os04t0348000-01
Chr04	irgsp1_rep	three_prime_UTR	16566109	16566396	.	+	.	Parent=Os04t0348000-01
Chr04	irgsp1_rep	mRNA	16567723	16571036	.	-	.	ID=Os04t0348100-01;Name=Os04t0348100-01;Locus_id=Os04g0348100;Note=Similar to OSIGBa0130K07.7 protein.;Transcript_evidence=AK061248 (DDBJ%2C Best hit);ORF_evidence=Q01LK0 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545);NIAS_FLcDNA=006-211-E12;Expression=AK061248;TENOR=Os04t0348100-01;KEGG=Os04t0348100-01
Chr04	irgsp1_rep	five_prime_UTR	16570945	16571036	.	-	.	Parent=Os04t0348100-01
Chr04	irgsp1_rep	CDS	16570653	16570944	.	-	0	Parent=Os04t0348100-01
Chr04	irgsp1_rep	CDS	16570382	16570577	.	-	2	Parent=Os04t0348100-01
Chr04	irgsp1_rep	CDS	16570132	16570204	.	-	1	Parent=Os04t0348100-01
Chr04	irgsp1_rep	CDS	16569463	16569512	.	-	0	Parent=Os04t0348100-01
Chr04	irgsp1_rep	CDS	16568062	16568175	.	-	1	Parent=Os04t0348100-01
Chr04	irgsp1_rep	CDS	16567842	16567968	.	-	1	Parent=Os04t0348100-01
Chr04	irgsp1_rep	three_prime_UTR	16567723	16567841	.	-	.	Parent=Os04t0348100-01
Chr04	irgsp1_rep	mRNA	16567718	16570990	.	-	.	ID=Os04t0348100-02;Name=Os04t0348100-02;Locus_id=Os04g0348100;Note=Similar to OSIGBa0130K07.7 protein.;Transcript_evidence=AK103339 (DDBJ%2C Best hit);ORF_evidence=Q01LK0 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545);NIAS_FLcDNA=J033126A18;TENOR=Os04t0348100-02
Chr04	irgsp1_rep	five_prime_UTR	16570945	16570990	.	-	.	Parent=Os04t0348100-02
Chr04	irgsp1_rep	CDS	16570653	16570944	.	-	0	Parent=Os04t0348100-02
Chr04	irgsp1_rep	CDS	16570382	16570577	.	-	2	Parent=Os04t0348100-02
Chr04	irgsp1_rep	CDS	16570132	16570204	.	-	1	Parent=Os04t0348100-02
Chr04	irgsp1_rep	CDS	16569463	16569512	.	-	0	Parent=Os04t0348100-02
Chr04	irgsp1_rep	CDS	16568062	16568175	.	-	1	Parent=Os04t0348100-02
Chr04	irgsp1_rep	CDS	16567842	16567968	.	-	1	Parent=Os04t0348100-02
Chr04	irgsp1_rep	three_prime_UTR	16567718	16567841	.	-	.	Parent=Os04t0348100-02
Chr04	irgsp1_rep	mRNA	16579948	16587160	.	+	.	ID=Os04t0348300-01;Name=Os04t0348300-01;Locus_id=Os04g0348300;Note=Similar to OSIGBa0130K07.8 protein.;Transcript_evidence=AK102248 (DDBJ%2C Best hit);ORF_evidence=Q01LJ9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930),Protein of unknown function DUF3351 (IPR021786);NIAS_FLcDNA=J033088F07;TENOR=Os04t0348300-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	16579948	16580208	.	+	.	Parent=Os04t0348300-01
Chr04	irgsp1_rep	CDS	16580209	16580385	.	+	0	Parent=Os04t0348300-01
Chr04	irgsp1_rep	CDS	16582247	16583968	.	+	0	Parent=Os04t0348300-01
Chr04	irgsp1_rep	CDS	16585544	16585825	.	+	0	Parent=Os04t0348300-01
Chr04	irgsp1_rep	CDS	16586126	16586863	.	+	0	Parent=Os04t0348300-01
Chr04	irgsp1_rep	three_prime_UTR	16586864	16587160	.	+	.	Parent=Os04t0348300-01
Chr04	irgsp1_rep	mRNA	16582843	16587179	.	+	.	ID=Os04t0348300-02;Name=Os04t0348300-02;Locus_id=Os04g0348300;Note=Similar to OSIGBa0130K07.8 protein.;Transcript_evidence=AK112077 (DDBJ%2C Best hit);ORF_evidence=Q01LJ9 (UniProt);InterPro=Myb transcription factor (IPR015495),Protein of unknown function DUF3351 (IPR021786);NIAS_FLcDNA=001-124-B04;TENOR=Os04t0348300-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	16582843	16582843	.	+	.	Parent=Os04t0348300-02
Chr04	irgsp1_rep	CDS	16582844	16583968	.	+	0	Parent=Os04t0348300-02
Chr04	irgsp1_rep	CDS	16585544	16585825	.	+	0	Parent=Os04t0348300-02
Chr04	irgsp1_rep	CDS	16586126	16586863	.	+	0	Parent=Os04t0348300-02
Chr04	irgsp1_rep	three_prime_UTR	16586864	16587179	.	+	.	Parent=Os04t0348300-02
Chr04	irgsp1_rep	mRNA	16590486	16593924	.	-	.	ID=Os04t0348400-01;Name=Os04t0348400-01;Locus_id=Os04g0348400;Oryzabase Gene Symbol Synonym(s)=OsPUB7;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 7%2C U-box protein 7;Note=Similar to OSIGBa0130K07.9 protein.;Transcript_evidence=AK243053 (DDBJ%2C Best hit);ORF_evidence=Q01LJ8 (UniProt);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),U box domain (IPR003613),Armadillo-like helical (IPR011989),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J100012P20;Oryzabase=17800;TENOR=Os04t0348400-01;KEGG=Os04t0348400-01
Chr04	irgsp1_rep	five_prime_UTR	16593836	16593924	.	-	.	Parent=Os04t0348400-01
Chr04	irgsp1_rep	CDS	16593542	16593835	.	-	0	Parent=Os04t0348400-01
Chr04	irgsp1_rep	CDS	16590787	16591872	.	-	0	Parent=Os04t0348400-01
Chr04	irgsp1_rep	three_prime_UTR	16590486	16590786	.	-	.	Parent=Os04t0348400-01
Chr04	irgsp1_rep	mRNA	16602478	16605137	.	+	.	ID=Os04t0348600-01;Name=Os04t0348600-01;Locus_id=Os04g0348600;Oryzabase Gene Symbol Synonym(s)=OsPRR12%2C Rra17%2C OsRRA17%2C OsEnS-61;Oryzabase Gene Name Synonym(s)=pseudo-response regulator 12%2C A-type response regulator 17%2C A-type RR 17%2C endosperm-specific gene 61;Note=Hypothetical conserved gene.;Transcript_evidence=AK242580 (DDBJ%2C Best hit);ORF_evidence=A3ASM8 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: two-component response regulator activity (GO:0000156);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),CheY-like superfamily (IPR011006);NIAS_FLcDNA=J090009P16;Oryzabase=9840;TENOR=Os04t0348600-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	16602478	16602523	.	+	.	Parent=Os04t0348600-01
Chr04	irgsp1_rep	CDS	16602524	16602635	.	+	0	Parent=Os04t0348600-01
Chr04	irgsp1_rep	CDS	16603111	16603274	.	+	2	Parent=Os04t0348600-01
Chr04	irgsp1_rep	three_prime_UTR	16603275	16603543	.	+	.	Parent=Os04t0348600-01
Chr04	irgsp1_rep	three_prime_UTR	16604585	16605137	.	+	.	Parent=Os04t0348600-01
Chr04	irgsp1_rep	mRNA	16614604	16616529	.	+	.	ID=Os04t0348800-00;Name=Os04t0348800-00;Locus_id=Os04g0348800;CGSNL Gene Symbol=RR29;CGSNL Gene Name=B-TYPE RESPONSE REGULATOR 29;Oryzabase Gene Symbol Synonym(s)=OsRR29%2C Rrb7%2C OsPRR4%2C OsRRB7;Oryzabase Gene Name Synonym(s)=B-type RR 7%2C response regulator 29;Note=Signal transduction response regulator%2C receiver domain domain containing protein.;Transcript_evidence=EU943754 (DDBJ);ORF_evidence=NP_001173885.1 (RefSeq);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: two-component response regulator activity (GO:0000156);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),CheY-like superfamily (IPR011006);Oryzabase=9832;TENOR=Os04t0348800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	16614604	16614718	.	+	0	Parent=Os04t0348800-00
Chr04	irgsp1_rep	CDS	16615113	16615268	.	+	2	Parent=Os04t0348800-00
Chr04	irgsp1_rep	CDS	16615465	16615676	.	+	2	Parent=Os04t0348800-00
Chr04	irgsp1_rep	three_prime_UTR	16615677	16615678	.	+	.	Parent=Os04t0348800-00
Chr04	irgsp1_rep	three_prime_UTR	16616274	16616343	.	+	.	Parent=Os04t0348800-00
Chr04	irgsp1_rep	three_prime_UTR	16616453	16616529	.	+	.	Parent=Os04t0348800-00
Chr04	irgsp1_rep	mRNA	16637645	16638971	.	-	.	ID=Os04t0349300-00;Name=Os04t0349300-00;Locus_id=Os04g0349300;Note=Non-protein coding transcript.;Transcript_evidence=CT841807 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os04t0349300-00
Chr04	irgsp1_rep	exon	16637645	16638971	.	-	.	Parent=Os04t0349300-00
Chr04	irgsp1_rep	mRNA	16639360	16643123	.	-	.	ID=Os04t0349401-00;Name=Os04t0349401-00;Locus_id=Os04g0349401;Note=Hypothetical conserved gene.;Transcript_evidence=AK359225 (DDBJ);ORF_evidence=B8ASI0 (UniProt);TENOR=Os04t0349401-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	16642585	16643123	.	-	.	Parent=Os04t0349401-00
Chr04	irgsp1_rep	CDS	16642082	16642584	.	-	0	Parent=Os04t0349401-00
Chr04	irgsp1_rep	CDS	16641487	16641601	.	-	1	Parent=Os04t0349401-00
Chr04	irgsp1_rep	CDS	16640989	16641096	.	-	0	Parent=Os04t0349401-00
Chr04	irgsp1_rep	CDS	16639877	16640383	.	-	0	Parent=Os04t0349401-00
Chr04	irgsp1_rep	three_prime_UTR	16639626	16639876	.	-	.	Parent=Os04t0349401-00
Chr04	irgsp1_rep	three_prime_UTR	16639360	16639544	.	-	.	Parent=Os04t0349401-00
Chr04	irgsp1_rep	mRNA	16645729	16648381	.	-	.	ID=Os04t0349500-01;Name=Os04t0349500-01;Locus_id=Os04g0349500;Oryzabase Gene Name Synonym(s)=Ribosomal protein S8;Note=Similar to 40S ribosomal protein S8.;Transcript_evidence=AK068316 (DDBJ%2C Best hit);ORF_evidence=A2XS59 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S8e (IPR001047),Ribosomal protein S8e%2C conserved site (IPR018283),Ribosomal protein S8e/ribosomal biogenesis NSA2 (IPR022309);NIAS_FLcDNA=J013151C04;Oryzabase=17634;Expression=AK068316;TENOR=Os04t0349500-01;KEGG=Os04t0349500-01
Chr04	irgsp1_rep	five_prime_UTR	16648285	16648381	.	-	.	Parent=Os04t0349500-01
Chr04	irgsp1_rep	CDS	16648281	16648284	.	-	0	Parent=Os04t0349500-01
Chr04	irgsp1_rep	CDS	16648065	16648137	.	-	2	Parent=Os04t0349500-01
Chr04	irgsp1_rep	CDS	16646965	16647298	.	-	1	Parent=Os04t0349500-01
Chr04	irgsp1_rep	CDS	16646273	16646448	.	-	0	Parent=Os04t0349500-01
Chr04	irgsp1_rep	CDS	16645987	16646065	.	-	1	Parent=Os04t0349500-01
Chr04	irgsp1_rep	three_prime_UTR	16645729	16645986	.	-	.	Parent=Os04t0349500-01
Chr04	irgsp1_rep	mRNA	16661799	16664487	.	+	.	ID=Os04t0349600-01;Name=Os04t0349600-01;Locus_id=Os04g0349600;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK070947 (DDBJ%2C Best hit);ORF_evidence=Q7XKS5 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J023072C12;TENOR=Os04t0349600-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	16661799	16662065	.	+	.	Parent=Os04t0349600-01
Chr04	irgsp1_rep	CDS	16662066	16663140	.	+	0	Parent=Os04t0349600-01
Chr04	irgsp1_rep	CDS	16663298	16663386	.	+	2	Parent=Os04t0349600-01
Chr04	irgsp1_rep	three_prime_UTR	16663387	16664487	.	+	.	Parent=Os04t0349600-01
Chr04	irgsp1_rep	mRNA	16662508	16664437	.	-	.	ID=Os04t0349650-00;Name=Os04t0349650-00;Locus_id=Os04g0349650;Note=Hypothetical protein.;Transcript_evidence=tplb0040d05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0349650-00
Chr04	irgsp1_rep	five_prime_UTR	16663996	16664437	.	-	.	Parent=Os04t0349650-00
Chr04	irgsp1_rep	five_prime_UTR	16663407	16663785	.	-	.	Parent=Os04t0349650-00
Chr04	irgsp1_rep	CDS	16663020	16663406	.	-	0	Parent=Os04t0349650-00
Chr04	irgsp1_rep	three_prime_UTR	16662508	16663019	.	-	.	Parent=Os04t0349650-00
Chr04	irgsp1_rep	mRNA	16667270	16670469	.	-	.	ID=Os04t0349700-01;Name=Os04t0349700-01;Locus_id=Os04g0349700;CGSNL Gene Symbol=VWR;CGSNL Gene Name=VERTICILLIUM WILT RESISTANCE;Oryzabase Gene Symbol Synonym(s)=OsVWR;Oryzabase Gene Name Synonym(s)=Verticillium wilt resistance%2C Verticillium wilt resistance protein;Note=Leucine-rich repeat%2C typical subtype containing protein.;Transcript_evidence=AK119351 (DDBJ%2C Best hit);ORF_evidence=Q7XKS4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=001-131-F03;Oryzabase=22833;Expression=AK119351;TENOR=Os04t0349700-01;KEGG=Os04t0349700-01
Chr04	irgsp1_rep	five_prime_UTR	16670455	16670469	.	-	.	Parent=Os04t0349700-01
Chr04	irgsp1_rep	CDS	16667728	16670454	.	-	0	Parent=Os04t0349700-01
Chr04	irgsp1_rep	three_prime_UTR	16667270	16667727	.	-	.	Parent=Os04t0349700-01
Chr04	irgsp1_rep	mRNA	16685127	16687603	.	+	.	ID=Os04t0350000-01;Name=Os04t0350000-01;Locus_id=Os04g0350000;Note=Similar to PPR protein.;Transcript_evidence=AK063387 (DDBJ%2C Best hit);ORF_evidence=Q01KV3 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Twin-arginine translocation pathway%2C signal sequence (IPR006311),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-114-G10;Expression=AK063387;TENOR=Os04t0350000-01;KEGG=Os04t0350000-01
Chr04	irgsp1_rep	five_prime_UTR	16685127	16685278	.	+	.	Parent=Os04t0350000-01
Chr04	irgsp1_rep	CDS	16685279	16687564	.	+	0	Parent=Os04t0350000-01
Chr04	irgsp1_rep	three_prime_UTR	16687565	16687603	.	+	.	Parent=Os04t0350000-01
Chr04	irgsp1_rep	mRNA	16685163	16693432	.	+	.	ID=Os04t0350000-02;Name=Os04t0350000-02;Locus_id=Os04g0350000;Note=Hypothetical conserved gene.;Transcript_evidence=AK121263 (DDBJ%2C Best hit);ORF_evidence=Q7XKS2 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J023104P20;Expression=AK121263;TENOR=Os04t0350000-02;KEGG=Os04t0350000-02
Chr04	irgsp1_rep	five_prime_UTR	16685163	16685164	.	+	.	Parent=Os04t0350000-02
Chr04	irgsp1_rep	CDS	16685165	16687376	.	+	0	Parent=Os04t0350000-02
Chr04	irgsp1_rep	CDS	16687476	16687564	.	+	2	Parent=Os04t0350000-02
Chr04	irgsp1_rep	three_prime_UTR	16687565	16687581	.	+	.	Parent=Os04t0350000-02
Chr04	irgsp1_rep	three_prime_UTR	16691907	16693432	.	+	.	Parent=Os04t0350000-02
Chr04	irgsp1_rep	mRNA	16686773	16688496	.	+	.	ID=Os04t0350000-03;Name=Os04t0350000-03;Locus_id=Os04g0350000;Note=Similar to PPR protein.;Transcript_evidence=AK110849 (DDBJ%2C Best hit);ORF_evidence=Q7XKS2 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=002-172-C03;Expression=AK110849;TENOR=Os04t0350000-03;KEGG=Os04t0350000-03
Chr04	irgsp1_rep	CDS	16686773	16687564	.	+	0	Parent=Os04t0350000-03
Chr04	irgsp1_rep	three_prime_UTR	16687565	16688496	.	+	.	Parent=Os04t0350000-03
Chr04	irgsp1_rep	mRNA	16694177	16694832	.	-	.	ID=Os04t0350100-01;Name=Os04t0350100-01;Locus_id=Os04g0350100;Note=Proteinase inhibitor I25%2C cystatin domain containing protein.;Transcript_evidence=AK102139 (DDBJ%2C Best hit),AK063869 (DDBJ%2C Best hit);ORF_evidence=A2XS65 (UniProt);GO=Molecular Function: cysteine-type endopeptidase inhibitor activity (GO:0004869);InterPro=Proteinase inhibitor I25%2C cystatin (IPR000010),Proteinase inhibitor I25%2C cystatin%2C conserved region (IPR020381);NIAS_FLcDNA=J033085J19,001-122-E07;TENOR=Os04t0350100-01
Chr04	irgsp1_rep	five_prime_UTR	16694807	16694832	.	-	.	Parent=Os04t0350100-01
Chr04	irgsp1_rep	CDS	16694351	16694806	.	-	0	Parent=Os04t0350100-01
Chr04	irgsp1_rep	three_prime_UTR	16694177	16694350	.	-	.	Parent=Os04t0350100-01
Chr04	irgsp1_rep	mRNA	16700633	16703516	.	-	.	ID=Os04t0350201-00;Name=Os04t0350201-00;Locus_id=Os04g0350201;Note=Non-protein coding transcript.;Transcript_evidence=BT086886 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0350201-00;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	exon	16703415	16703516	.	-	.	Parent=Os04t0350201-00
Chr04	irgsp1_rep	exon	16702647	16702732	.	-	.	Parent=Os04t0350201-00
Chr04	irgsp1_rep	exon	16702024	16702131	.	-	.	Parent=Os04t0350201-00
Chr04	irgsp1_rep	exon	16701847	16701951	.	-	.	Parent=Os04t0350201-00
Chr04	irgsp1_rep	exon	16701555	16701686	.	-	.	Parent=Os04t0350201-00
Chr04	irgsp1_rep	exon	16701374	16701455	.	-	.	Parent=Os04t0350201-00
Chr04	irgsp1_rep	exon	16700633	16700786	.	-	.	Parent=Os04t0350201-00
Chr04	irgsp1_rep	mRNA	16702664	16707387	.	+	.	ID=Os04t0350300-00;Name=Os04t0350300-00;Locus_id=Os04g0350300;Oryzabase Gene Symbol Synonym(s)=PAKRP1%2C OsKRP1%2C SIP18;Oryzabase Gene Name Synonym(s)=phragmoplast-associated kinesin-related protein 1%2C PAKRP1 homolog%2C SKIP interacting protein 18%2C SKIPa-interacting protein 18%2C SKIPa-interacting protein 18;Note=Similar to SKIP interacting protein 18 (Fragment).;Transcript_evidence=AF210816 (DDBJ%2C Best hit);ORF_evidence=B8Q8A4 (UniProt);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752),Kinesin-related conserved domain (IPR010544);Oryzabase=13852;TENOR=Os04t0350300-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	16702664	16702744	.	+	.	Parent=Os04t0350300-00
Chr04	irgsp1_rep	five_prime_UTR	16703427	16703572	.	+	.	Parent=Os04t0350300-00
Chr04	irgsp1_rep	five_prime_UTR	16704136	16704256	.	+	.	Parent=Os04t0350300-00
Chr04	irgsp1_rep	CDS	16704257	16704285	.	+	0	Parent=Os04t0350300-00
Chr04	irgsp1_rep	CDS	16704375	16704504	.	+	1	Parent=Os04t0350300-00
Chr04	irgsp1_rep	CDS	16704614	16705273	.	+	0	Parent=Os04t0350300-00
Chr04	irgsp1_rep	CDS	16705367	16705465	.	+	0	Parent=Os04t0350300-00
Chr04	irgsp1_rep	CDS	16705544	16705696	.	+	0	Parent=Os04t0350300-00
Chr04	irgsp1_rep	CDS	16705809	16706540	.	+	0	Parent=Os04t0350300-00
Chr04	irgsp1_rep	CDS	16706824	16707126	.	+	0	Parent=Os04t0350300-00
Chr04	irgsp1_rep	three_prime_UTR	16707127	16707387	.	+	.	Parent=Os04t0350300-00
Chr04	irgsp1_rep	mRNA	16731738	16735336	.	-	.	ID=Os04t0350700-01;Name=Os04t0350700-01;Locus_id=Os04g0350700;RAP-DB Gene Symbol Synonym(s)=AN1%2C An-1%2C OsbHLH093%2C RAE1%2C An-1/RAE1%2C RAE1/An-1%2C Awn4-2;RAP-DB Gene Name Synonym(s)=AWN1%2C Awn-1%2C basic helix-loop-helix protein 093%2C Regulatory of awn elongation 1%2C REGULATOR OF AWN ELONGATION 1%2C Regulator of Awn Elongation 1;CGSNL Gene Symbol=AN1;CGSNL Gene Name=AWN1;Oryzabase Gene Symbol Synonym(s)=An-1%2C OsbHLH093%2C RAE1%2C An-1/RAE1%2C RAE1/An-1;Oryzabase Gene Name Synonym(s)=Awn-1%2C basic helix-loop-helix protein 093%2C Regulatory of awn elongation 1%2C REGULATOR OF AWN ELONGATION 1%2C Regulator of Awn Elongation 1%2C Awn4-2;Note=Basic helix-loop-helix protein%2C Regulation of awn development%2C grain size%2C and grain number;Transcript_evidence=AK108605;ORF_evidence=Q0JDZ1;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);NIAS_FLcDNA=002-146-G10;Manual Curation=January 9%2C 2018;Literature_PMID=27494628,24076974;Oryzabase=15014;Expression=AK108605;TENOR=Os04t0350700-01;KEGG=Os04t0350700-01
Chr04	irgsp1_rep	five_prime_UTR	16735244	16735336	.	-	.	Parent=Os04t0350700-01
Chr04	irgsp1_rep	five_prime_UTR	16734807	16734879	.	-	.	Parent=Os04t0350700-01
Chr04	irgsp1_rep	CDS	16734690	16734806	.	-	0	Parent=Os04t0350700-01
Chr04	irgsp1_rep	CDS	16734438	16734611	.	-	0	Parent=Os04t0350700-01
Chr04	irgsp1_rep	CDS	16734178	16734243	.	-	0	Parent=Os04t0350700-01
Chr04	irgsp1_rep	CDS	16733277	16733345	.	-	0	Parent=Os04t0350700-01
Chr04	irgsp1_rep	CDS	16733028	16733099	.	-	0	Parent=Os04t0350700-01
Chr04	irgsp1_rep	CDS	16732663	16732903	.	-	0	Parent=Os04t0350700-01
Chr04	irgsp1_rep	CDS	16732393	16732445	.	-	2	Parent=Os04t0350700-01
Chr04	irgsp1_rep	three_prime_UTR	16731738	16732392	.	-	.	Parent=Os04t0350700-01
Chr04	irgsp1_rep	mRNA	16752347	16757209	.	-	.	ID=Os04t0351100-00;Name=Os04t0351100-00;Locus_id=Os04g0351100;Note=Hypothetical protein.;Transcript_evidence=tplb0023j11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0351100-00
Chr04	irgsp1_rep	five_prime_UTR	16755216	16757209	.	-	.	Parent=Os04t0351100-00
Chr04	irgsp1_rep	CDS	16754822	16755215	.	-	0	Parent=Os04t0351100-00
Chr04	irgsp1_rep	CDS	16752514	16752554	.	-	2	Parent=Os04t0351100-00
Chr04	irgsp1_rep	three_prime_UTR	16752347	16752513	.	-	.	Parent=Os04t0351100-00
Chr04	irgsp1_rep	mRNA	16754102	16757223	.	+	.	ID=Os04t0351333-00;Name=Os04t0351333-00;Locus_id=Os04g0351333;Note=Similar to OSIGBa0144C23.4 protein.;Transcript_evidence=AK373258 (DDBJ);ORF_evidence=Q01KV3 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os04t0351333-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	16754102	16754298	.	+	0	Parent=Os04t0351333-00
Chr04	irgsp1_rep	CDS	16754781	16757223	.	+	1	Parent=Os04t0351333-00
Chr04	irgsp1_rep	mRNA	16795191	16795442	.	-	.	ID=Os04t0351800-00;Name=Os04t0351800-00;Locus_id=Os04g0351800;Note=Conserved hypothetical protein.;Transcript_evidence=FP101309 (DDBJ);ORF_evidence=B8ASJ0 (UniProt);TENOR=Os04t0351800-00
Chr04	irgsp1_rep	CDS	16795191	16795442	.	-	0	Parent=Os04t0351800-00
Chr04	irgsp1_rep	mRNA	16800126	16800341	.	-	.	ID=Os04t0351933-00;Name=Os04t0351933-00;Locus_id=Os04g0351933;Note=Conserved hypothetical protein.;Transcript_evidence=FP101309 (DDBJ);ORF_evidence=A3ASQ2 (UniProt);TENOR=Os04t0351933-00
Chr04	irgsp1_rep	five_prime_UTR	16800312	16800341	.	-	.	Parent=Os04t0351933-00
Chr04	irgsp1_rep	CDS	16800126	16800311	.	-	0	Parent=Os04t0351933-00
Chr04	irgsp1_rep	mRNA	16801977	16802287	.	+	.	ID=Os04t0352066-00;Name=Os04t0352066-00;Locus_id=Os04g0352066;Note=Conserved hypothetical protein.;Transcript_evidence=AK375252 (DDBJ);ORF_evidence=B9FEL4 (UniProt);TENOR=Os04t0352066-00
Chr04	irgsp1_rep	five_prime_UTR	16801977	16802085	.	+	.	Parent=Os04t0352066-00
Chr04	irgsp1_rep	CDS	16802086	16802286	.	+	0	Parent=Os04t0352066-00
Chr04	irgsp1_rep	three_prime_UTR	16802287	16802287	.	+	.	Parent=Os04t0352066-00
Chr04	irgsp1_rep	mRNA	16807387	16808257	.	+	.	ID=Os04t0352200-01;Name=Os04t0352200-01;Locus_id=Os04g0352200;Note=Conserved hypothetical protein.;Transcript_evidence=AK103395 (DDBJ%2C Best hit);ORF_evidence=A2XS74 (UniProt);NIAS_FLcDNA=J033127M23;Expression=AK103395;TENOR=Os04t0352200-01;KEGG=Os04t0352200-01
Chr04	irgsp1_rep	five_prime_UTR	16807387	16807505	.	+	.	Parent=Os04t0352200-01
Chr04	irgsp1_rep	CDS	16807506	16808129	.	+	0	Parent=Os04t0352200-01
Chr04	irgsp1_rep	three_prime_UTR	16808130	16808257	.	+	.	Parent=Os04t0352200-01
Chr04	irgsp1_rep	mRNA	16813905	16817974	.	-	.	ID=Os04t0352400-01;Name=Os04t0352400-01;Locus_id=Os04g0352400;RAP-DB Gene Symbol Synonym(s)=OsFKBP65%2C OsFKBP62b;RAP-DB Gene Name Synonym(s)=FK506-binding protein 65;Oryzabase Gene Symbol Synonym(s)=OsFKBP62b%2C OsFKBP65%2C FKBP62b%2C FKBP65;Oryzabase Gene Name Synonym(s)=FK506 binding protein 62b%2C FK506 binding protein 65;Note=FK506-binding protein%2C Peptidyl-prolyl cis/trans isomerase%2C Chilling tolerance;Transcript_evidence=AK100844;ORF_evidence=Q9XFE4;GO=Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical domain superfamily (IPR011990),FKBP-type peptidyl-prolyl cis-trans isomerase domain (IPR001179),Tetratricopeptide repeat-containing domain (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J023123G09;Manual Curation=October 15%2C 2020;Literature_PMID=25496090,19768557;Oryzabase=10048;Expression=AK100844;TENOR=Os04t0352400-01;KEGG=Os04t0352400-01 (EC:5.2.1.8)
Chr04	irgsp1_rep	five_prime_UTR	16817890	16817974	.	-	.	Parent=Os04t0352400-01
Chr04	irgsp1_rep	CDS	16817673	16817889	.	-	0	Parent=Os04t0352400-01
Chr04	irgsp1_rep	CDS	16817462	16817548	.	-	2	Parent=Os04t0352400-01
Chr04	irgsp1_rep	CDS	16817099	16817359	.	-	2	Parent=Os04t0352400-01
Chr04	irgsp1_rep	CDS	16816585	16816659	.	-	2	Parent=Os04t0352400-01
Chr04	irgsp1_rep	CDS	16816406	16816486	.	-	2	Parent=Os04t0352400-01
Chr04	irgsp1_rep	CDS	16816088	16816282	.	-	2	Parent=Os04t0352400-01
Chr04	irgsp1_rep	CDS	16815724	16815989	.	-	2	Parent=Os04t0352400-01
Chr04	irgsp1_rep	CDS	16815511	16815636	.	-	0	Parent=Os04t0352400-01
Chr04	irgsp1_rep	CDS	16815286	16815432	.	-	0	Parent=Os04t0352400-01
Chr04	irgsp1_rep	CDS	16814577	16814704	.	-	0	Parent=Os04t0352400-01
Chr04	irgsp1_rep	CDS	16814374	16814494	.	-	1	Parent=Os04t0352400-01
Chr04	irgsp1_rep	CDS	16814223	16814276	.	-	0	Parent=Os04t0352400-01
Chr04	irgsp1_rep	three_prime_UTR	16813905	16814222	.	-	.	Parent=Os04t0352400-01
Chr04	irgsp1_rep	mRNA	16825210	16825905	.	-	.	ID=Os04t0352700-00;Name=Os04t0352700-00;Locus_id=Os04g0352700;Note=Similar to Metal-nicotianamine transporter YSL2.;Transcript_evidence=AK372171 (DDBJ);ORF_evidence=Q6H3Z6 (UniProt);TENOR=Os04t0352700-00
Chr04	irgsp1_rep	CDS	16825210	16825905	.	-	0	Parent=Os04t0352700-00
Chr04	irgsp1_rep	mRNA	16843350	16844876	.	-	.	ID=Os04t0353000-01;Name=Os04t0353000-01;Locus_id=Os04g0353000;Note=Similar to Cation-transporting ATPase.;Transcript_evidence=AK063167 (DDBJ%2C Best hit);ORF_evidence=NP_568633.1 (RefSeq);NIAS_FLcDNA=001-109-H07;Expression=AK063167;TENOR=Os04t0353000-01;KEGG=Os04t0353000-01 (EC:3.6.3.1)
Chr04	irgsp1_rep	five_prime_UTR	16844845	16844876	.	-	.	Parent=Os04t0353000-01
Chr04	irgsp1_rep	five_prime_UTR	16844521	16844567	.	-	.	Parent=Os04t0353000-01
Chr04	irgsp1_rep	CDS	16844467	16844520	.	-	0	Parent=Os04t0353000-01
Chr04	irgsp1_rep	CDS	16844223	16844350	.	-	0	Parent=Os04t0353000-01
Chr04	irgsp1_rep	CDS	16844002	16844152	.	-	1	Parent=Os04t0353000-01
Chr04	irgsp1_rep	CDS	16843647	16843895	.	-	0	Parent=Os04t0353000-01
Chr04	irgsp1_rep	three_prime_UTR	16843350	16843646	.	-	.	Parent=Os04t0353000-01
Chr04	irgsp1_rep	mRNA	16882610	16890074	.	+	.	ID=Os04t0353600-01;Name=Os04t0353600-01;Locus_id=Os04g0353600;CGSNL Gene Symbol=RALF2;CGSNL Gene Name=RAPID ALKALIZATION FACTOR 2;Oryzabase Gene Symbol Synonym(s)=OsRALF-2%2C OsRALF2%2C RALF-2;Oryzabase Gene Name Synonym(s)=Rapid alkalization factor 2;Note=Similar to OSIGBa0092G14.1 protein.;Transcript_evidence=AK241568 (DDBJ%2C Best hit);ORF_evidence=Q01KY1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620);InterPro=Male sterility (IPR004262),Male sterility%2C NAD-binding (IPR013120),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J065179E12;Oryzabase=21106;TENOR=Os04t0353600-01;KEGG=Os04t0353600-01 (EC:1.2.1.-)
Chr04	irgsp1_rep	five_prime_UTR	16882610	16882651	.	+	.	Parent=Os04t0353600-01
Chr04	irgsp1_rep	CDS	16882652	16882730	.	+	0	Parent=Os04t0353600-01
Chr04	irgsp1_rep	CDS	16883834	16883937	.	+	2	Parent=Os04t0353600-01
Chr04	irgsp1_rep	CDS	16884548	16884747	.	+	0	Parent=Os04t0353600-01
Chr04	irgsp1_rep	CDS	16885908	16886008	.	+	1	Parent=Os04t0353600-01
Chr04	irgsp1_rep	CDS	16887376	16887565	.	+	2	Parent=Os04t0353600-01
Chr04	irgsp1_rep	CDS	16887656	16887817	.	+	1	Parent=Os04t0353600-01
Chr04	irgsp1_rep	CDS	16888207	16888288	.	+	1	Parent=Os04t0353600-01
Chr04	irgsp1_rep	CDS	16888824	16889090	.	+	0	Parent=Os04t0353600-01
Chr04	irgsp1_rep	CDS	16889204	16889331	.	+	0	Parent=Os04t0353600-01
Chr04	irgsp1_rep	CDS	16889676	16889856	.	+	1	Parent=Os04t0353600-01
Chr04	irgsp1_rep	three_prime_UTR	16889857	16890074	.	+	.	Parent=Os04t0353600-01
Chr04	irgsp1_rep	mRNA	16919612	16923563	.	+	.	ID=Os04t0354200-00;Name=Os04t0354200-00;Locus_id=Os04g0354200;Note=Similar to OSIGBa0092G14.5 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01KX7 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=FAR1 DNA binding domain (IPR004330),Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);TENOR=Os04t0354200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	16919612	16919664	.	+	0	Parent=Os04t0354200-00
Chr04	irgsp1_rep	CDS	16919767	16919862	.	+	1	Parent=Os04t0354200-00
Chr04	irgsp1_rep	CDS	16919941	16920015	.	+	1	Parent=Os04t0354200-00
Chr04	irgsp1_rep	CDS	16920649	16920723	.	+	1	Parent=Os04t0354200-00
Chr04	irgsp1_rep	CDS	16920817	16921039	.	+	1	Parent=Os04t0354200-00
Chr04	irgsp1_rep	CDS	16921133	16921541	.	+	0	Parent=Os04t0354200-00
Chr04	irgsp1_rep	CDS	16921941	16922398	.	+	2	Parent=Os04t0354200-00
Chr04	irgsp1_rep	CDS	16922477	16922758	.	+	0	Parent=Os04t0354200-00
Chr04	irgsp1_rep	CDS	16922862	16923563	.	+	0	Parent=Os04t0354200-00
Chr04	irgsp1_rep	mRNA	16916761	16933860	.	+	.	ID=Os04t0354400-00;Name=Os04t0354400-00;Locus_id=Os04g0354400;Note=Similar to OSIGBa0092G14.8 protein.;Transcript_evidence=AK250407 (DDBJ);ORF_evidence=Q01KX4 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=Male sterility%2C NAD-binding (IPR013120),NAD(P)-binding domain (IPR016040);TENOR=Os04t0354400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	16916761	16917048	.	+	0	Parent=Os04t0354400-00
Chr04	irgsp1_rep	CDS	16919040	16919236	.	+	0	Parent=Os04t0354400-00
Chr04	irgsp1_rep	CDS	16930254	16930357	.	+	1	Parent=Os04t0354400-00
Chr04	irgsp1_rep	CDS	16931736	16931931	.	+	2	Parent=Os04t0354400-00
Chr04	irgsp1_rep	CDS	16932034	16932195	.	+	1	Parent=Os04t0354400-00
Chr04	irgsp1_rep	CDS	16932551	16932632	.	+	1	Parent=Os04t0354400-00
Chr04	irgsp1_rep	CDS	16932703	16932969	.	+	0	Parent=Os04t0354400-00
Chr04	irgsp1_rep	CDS	16933115	16933242	.	+	0	Parent=Os04t0354400-00
Chr04	irgsp1_rep	CDS	16933705	16933816	.	+	1	Parent=Os04t0354400-00
Chr04	irgsp1_rep	three_prime_UTR	16933817	16933860	.	+	.	Parent=Os04t0354400-00
Chr04	irgsp1_rep	mRNA	16945210	16951596	.	+	.	ID=Os04t0354600-01;Name=Os04t0354600-01;Locus_id=Os04g0354600;CGSNL Gene Symbol=CER4;CGSNL Gene Name=ECERIFERUM 4;Oryzabase Gene Symbol Synonym(s)=OsCER4;Oryzabase Gene Name Synonym(s)=ECERIFERUM4;Note=Similar to Acyl CoA reductase-like protein.;Transcript_evidence=AK065894 (DDBJ%2C Best hit);ORF_evidence=Q01KX4 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620);InterPro=Male sterility (IPR004262),Male sterility%2C NAD-binding (IPR013120),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013044F22;Oryzabase=19166;Expression=AK065894;TENOR=Os04t0354600-01;KEGG=Os04t0354600-01 (EC:1.2.1.-)
Chr04	irgsp1_rep	five_prime_UTR	16945210	16945269	.	+	.	Parent=Os04t0354600-01
Chr04	irgsp1_rep	CDS	16945270	16945348	.	+	0	Parent=Os04t0354600-01
Chr04	irgsp1_rep	CDS	16946453	16946556	.	+	2	Parent=Os04t0354600-01
Chr04	irgsp1_rep	CDS	16947286	16947485	.	+	0	Parent=Os04t0354600-01
Chr04	irgsp1_rep	CDS	16948384	16948484	.	+	1	Parent=Os04t0354600-01
Chr04	irgsp1_rep	CDS	16949238	16949433	.	+	2	Parent=Os04t0354600-01
Chr04	irgsp1_rep	CDS	16949525	16949686	.	+	1	Parent=Os04t0354600-01
Chr04	irgsp1_rep	CDS	16950073	16950154	.	+	1	Parent=Os04t0354600-01
Chr04	irgsp1_rep	CDS	16950232	16950498	.	+	0	Parent=Os04t0354600-01
Chr04	irgsp1_rep	CDS	16950620	16950747	.	+	0	Parent=Os04t0354600-01
Chr04	irgsp1_rep	CDS	16951115	16951295	.	+	1	Parent=Os04t0354600-01
Chr04	irgsp1_rep	three_prime_UTR	16951296	16951596	.	+	.	Parent=Os04t0354600-01
Chr04	irgsp1_rep	mRNA	16993828	16996874	.	-	.	ID=Os04t0355401-01;Name=Os04t0355401-01;Locus_id=Os04g0355401;Note=Hypothetical protein.;Transcript_evidence=AK242804 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090059N15;TENOR=Os04t0355401-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	16996338	16996874	.	-	0	Parent=Os04t0355401-01
Chr04	irgsp1_rep	three_prime_UTR	16996297	16996337	.	-	.	Parent=Os04t0355401-01
Chr04	irgsp1_rep	three_prime_UTR	16994418	16995500	.	-	.	Parent=Os04t0355401-01
Chr04	irgsp1_rep	three_prime_UTR	16993828	16994010	.	-	.	Parent=Os04t0355401-01
Chr04	irgsp1_rep	mRNA	16986167	17002986	.	+	.	ID=Os04t0355500-00;Name=Os04t0355500-00;Locus_id=Os04g0355500;Note=Similar to OSIGBa0147J02.3 protein.;Transcript_evidence=tplb0042f07 (Wheat FLcDNA);ORF_evidence=Q01L27 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=Male sterility%2C NAD-binding (IPR013120),NAD(P)-binding domain (IPR016040);TENOR=Os04t0355500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	16986167	16986169	.	+	.	Parent=Os04t0355500-00
Chr04	irgsp1_rep	CDS	16986170	16986248	.	+	0	Parent=Os04t0355500-00
Chr04	irgsp1_rep	CDS	16987869	16987972	.	+	2	Parent=Os04t0355500-00
Chr04	irgsp1_rep	CDS	16989626	16989825	.	+	0	Parent=Os04t0355500-00
Chr04	irgsp1_rep	CDS	16992675	16992775	.	+	1	Parent=Os04t0355500-00
Chr04	irgsp1_rep	CDS	17001269	17001309	.	+	2	Parent=Os04t0355500-00
Chr04	irgsp1_rep	three_prime_UTR	17001310	17001961	.	+	.	Parent=Os04t0355500-00
Chr04	irgsp1_rep	three_prime_UTR	17002092	17002219	.	+	.	Parent=Os04t0355500-00
Chr04	irgsp1_rep	three_prime_UTR	17002809	17002986	.	+	.	Parent=Os04t0355500-00
Chr04	irgsp1_rep	mRNA	17044349	17046921	.	+	.	ID=Os04t0356600-01;Name=Os04t0356600-01;Locus_id=Os04g0356600;Note=Similar to OSIGBa0105P02.3 protein.;Transcript_evidence=AK066063 (DDBJ%2C Best hit);ORF_evidence=Q01KU2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013050D20;TENOR=Os04t0356600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	17044349	17044350	.	+	.	Parent=Os04t0356600-01
Chr04	irgsp1_rep	CDS	17044351	17046789	.	+	0	Parent=Os04t0356600-01
Chr04	irgsp1_rep	three_prime_UTR	17046790	17046921	.	+	.	Parent=Os04t0356600-01
Chr04	irgsp1_rep	mRNA	17044448	17046749	.	-	.	ID=Os04t0356800-00;Name=Os04t0356800-00;Locus_id=Os04g0356800;Note=Hypothetical protein.;Transcript_evidence=tplb0036o12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0356800-00
Chr04	irgsp1_rep	five_prime_UTR	17045322	17046749	.	-	.	Parent=Os04t0356800-00
Chr04	irgsp1_rep	five_prime_UTR	17045010	17045159	.	-	.	Parent=Os04t0356800-00
Chr04	irgsp1_rep	CDS	17044719	17045009	.	-	0	Parent=Os04t0356800-00
Chr04	irgsp1_rep	three_prime_UTR	17044448	17044718	.	-	.	Parent=Os04t0356800-00
Chr04	irgsp1_rep	mRNA	17056567	17056898	.	+	.	ID=Os04t0357000-00;Name=Os04t0357000-00;Locus_id=Os04g0357000;Note=Conserved hypothetical protein.;Transcript_evidence=AK374480 (DDBJ);ORF_evidence=B9FEM3 (UniProt);TENOR=Os04t0357000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	17056567	17056848	.	+	0	Parent=Os04t0357000-00
Chr04	irgsp1_rep	three_prime_UTR	17056849	17056898	.	+	.	Parent=Os04t0357000-00
Chr04	irgsp1_rep	mRNA	17061923	17071581	.	+	.	ID=Os04t0357200-01;Name=Os04t0357200-01;Locus_id=Os04g0357200;Note=Non-protein coding transcript.;Transcript_evidence=AK072908 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023150E04;TENOR=Os04t0357200-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	exon	17061923	17062155	.	+	.	Parent=Os04t0357200-01
Chr04	irgsp1_rep	exon	17063344	17063514	.	+	.	Parent=Os04t0357200-01
Chr04	irgsp1_rep	exon	17068454	17068547	.	+	.	Parent=Os04t0357200-01
Chr04	irgsp1_rep	exon	17070486	17070682	.	+	.	Parent=Os04t0357200-01
Chr04	irgsp1_rep	exon	17070821	17070903	.	+	.	Parent=Os04t0357200-01
Chr04	irgsp1_rep	exon	17071059	17071581	.	+	.	Parent=Os04t0357200-01
Chr04	irgsp1_rep	mRNA	17063617	17065887	.	-	.	ID=Os04t0357300-01;Name=Os04t0357300-01;Locus_id=Os04g0357300;Note=Similar to Helicase-like protein [Oryza sativa (japonica cultivar-group)].;Transcript_evidence=AK102855 (DDBJ%2C Best hit);ORF_evidence=longestORF;InterPro=DNA helicase PIF1%2C ATP-dependent (IPR010285);NIAS_FLcDNA=J033110M08;Expression=AK102855;TENOR=Os04t0357300-01;KEGG=Os04t0357300-01
Chr04	irgsp1_rep	five_prime_UTR	17065885	17065887	.	-	.	Parent=Os04t0357300-01
Chr04	irgsp1_rep	CDS	17064559	17065884	.	-	0	Parent=Os04t0357300-01
Chr04	irgsp1_rep	three_prime_UTR	17063617	17064558	.	-	.	Parent=Os04t0357300-01
Chr04	irgsp1_rep	mRNA	17084194	17084565	.	+	.	ID=Os04t0357500-00;Name=Os04t0357500-00;Locus_id=Os04g0357500;CGSNL Gene Symbol=RALF12;CGSNL Gene Name=RAPID ALKALIZATION FACTOR 12;Oryzabase Gene Symbol Synonym(s)=OsRALF-12%2C OsRALF12%2C RALF-12;Oryzabase Gene Name Synonym(s)=Rapid alkalization factor 12;Note=Conserved hypothetical protein.;Transcript_evidence=EU966738 (DDBJ);ORF_evidence=B8ASQ8 (UniProt);Oryzabase=21116;TENOR=Os04t0357500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	17084194	17084211	.	+	.	Parent=Os04t0357500-00
Chr04	irgsp1_rep	CDS	17084212	17084565	.	+	0	Parent=Os04t0357500-00
Chr04	irgsp1_rep	mRNA	17097749	17098154	.	+	.	ID=Os04t0357700-00;Name=Os04t0357700-00;Locus_id=Os04g0357700;CGSNL Gene Symbol=RALF13;CGSNL Gene Name=RAPID ALKALIZATION FACTOR 13;Oryzabase Gene Symbol Synonym(s)=OsRALF-13%2C OsRALF13%2C RALF-13;Oryzabase Gene Name Synonym(s)=Rapid alkalization factor 13;Note=Hypothetical conserved gene.;Transcript_evidence=AK250527 (DDBJ);ORF_evidence=NP_001052546.2 (RefSeq);Oryzabase=21117;TENOR=Os04t0357700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	17097749	17098126	.	+	0	Parent=Os04t0357700-00
Chr04	irgsp1_rep	three_prime_UTR	17098127	17098154	.	+	.	Parent=Os04t0357700-00
Chr04	irgsp1_rep	mRNA	17108109	17110621	.	+	.	ID=Os04t0358000-01;Name=Os04t0358000-01;Locus_id=Os04g0358000;Note=Similar to OSIGBa0104J13.1 protein.;Transcript_evidence=AK287896 (DDBJ%2C Best hit);ORF_evidence=Q01KT9 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),Polyketide synthase%2C enoylreductase (IPR020843);NIAS_FLcDNA=J065210E20;TENOR=Os04t0358000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	17108109	17109122	.	+	.	Parent=Os04t0358000-01
Chr04	irgsp1_rep	CDS	17109123	17109297	.	+	0	Parent=Os04t0358000-01
Chr04	irgsp1_rep	CDS	17109399	17109490	.	+	2	Parent=Os04t0358000-01
Chr04	irgsp1_rep	CDS	17109804	17110490	.	+	0	Parent=Os04t0358000-01
Chr04	irgsp1_rep	three_prime_UTR	17110491	17110621	.	+	.	Parent=Os04t0358000-01
Chr04	irgsp1_rep	mRNA	17109776	17110349	.	-	.	ID=Os04t0358150-00;Name=Os04t0358150-00;Locus_id=Os04g0358150;Note=Hypothetical protein.;Transcript_evidence=EU945918 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0358150-00
Chr04	irgsp1_rep	CDS	17109776	17110349	.	-	0	Parent=Os04t0358150-00
Chr04	irgsp1_rep	mRNA	17180207	17183428	.	+	.	ID=Os04t0359100-01;Name=Os04t0359100-01;Locus_id=Os04g0359100;Note=Alcohol dehydrogenase superfamily%2C zinc-containing protein.;Transcript_evidence=AK069384 (DDBJ%2C Best hit);ORF_evidence=Q01KS1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040),Polyketide synthase%2C enoylreductase (IPR020843);NIAS_FLcDNA=J023013H17;Expression=AK069384;TENOR=Os04t0359100-01;KEGG=Os04t0359100-01
Chr04	irgsp1_rep	five_prime_UTR	17180207	17180273	.	+	.	Parent=Os04t0359100-01
Chr04	irgsp1_rep	CDS	17180274	17180351	.	+	0	Parent=Os04t0359100-01
Chr04	irgsp1_rep	CDS	17180546	17180684	.	+	0	Parent=Os04t0359100-01
Chr04	irgsp1_rep	CDS	17180774	17180865	.	+	2	Parent=Os04t0359100-01
Chr04	irgsp1_rep	CDS	17182648	17183337	.	+	0	Parent=Os04t0359100-01
Chr04	irgsp1_rep	three_prime_UTR	17183338	17183428	.	+	.	Parent=Os04t0359100-01
Chr04	irgsp1_rep	mRNA	17185415	17186524	.	-	.	ID=Os04t0359300-00;Name=Os04t0359300-00;Locus_id=Os04g0359300;Note=Sulfotransferase family protein.;Transcript_evidence=AK362096 (DDBJ);ORF_evidence=Q01KS0 (UniProt);GO=Molecular Function: sulfotransferase activity (GO:0008146);InterPro=Sulfotransferase domain (IPR000863);TENOR=Os04t0359300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	17185436	17186524	.	-	0	Parent=Os04t0359300-00
Chr04	irgsp1_rep	three_prime_UTR	17185415	17185435	.	-	.	Parent=Os04t0359300-00
Chr04	irgsp1_rep	mRNA	17201224	17203486	.	+	.	ID=Os04t0359700-00;Name=Os04t0359700-00;Locus_id=Os04g0359700;Note=Hypothetical conserved gene.;Transcript_evidence=CT836590 (DDBJ%2C Best hit);ORF_evidence=NP_001052549.2 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040),Polyketide synthase%2C enoylreductase (IPR020843);TENOR=Os04t0359700-00;KEGG=Os04t0359700-00
Chr04	irgsp1_rep	five_prime_UTR	17201224	17201246	.	+	.	Parent=Os04t0359700-00
Chr04	irgsp1_rep	CDS	17201247	17201400	.	+	0	Parent=Os04t0359700-00
Chr04	irgsp1_rep	CDS	17201763	17201912	.	+	2	Parent=Os04t0359700-00
Chr04	irgsp1_rep	CDS	17202155	17202246	.	+	2	Parent=Os04t0359700-00
Chr04	irgsp1_rep	CDS	17202659	17203348	.	+	0	Parent=Os04t0359700-00
Chr04	irgsp1_rep	three_prime_UTR	17203349	17203486	.	+	.	Parent=Os04t0359700-00
Chr04	irgsp1_rep	mRNA	17207053	17208964	.	+	.	ID=Os04t0359900-00;Name=Os04t0359900-00;Locus_id=Os04g0359900;Note=Conserved hypothetical protein.;Transcript_evidence=AK289094 (DDBJ%2C Secondary hit);ORF_evidence=NP_001046063.1 (RefSeq);TENOR=Os04t0359900-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	17207053	17207319	.	+	.	Parent=Os04t0359900-00
Chr04	irgsp1_rep	CDS	17207320	17207538	.	+	0	Parent=Os04t0359900-00
Chr04	irgsp1_rep	three_prime_UTR	17207539	17207648	.	+	.	Parent=Os04t0359900-00
Chr04	irgsp1_rep	three_prime_UTR	17207851	17208964	.	+	.	Parent=Os04t0359900-00
Chr04	irgsp1_rep	mRNA	17202657	17203116	.	-	.	ID=Os04t0360400-00;Name=Os04t0360400-00;Locus_id=Os04g0360400;Note=Hypothetical protein.;Transcript_evidence=EU945918 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0360400-00
Chr04	irgsp1_rep	five_prime_UTR	17203115	17203116	.	-	.	Parent=Os04t0360400-00
Chr04	irgsp1_rep	CDS	17202657	17203114	.	-	0	Parent=Os04t0360400-00
Chr04	irgsp1_rep	mRNA	17258661	17263088	.	-	.	ID=Os04t0360500-01;Name=Os04t0360500-01;Locus_id=Os04g0360500;Note=Similar to OSIGBa0111E13.1 protein.;Transcript_evidence=AK241681 (DDBJ%2C Best hit);ORF_evidence=Q01KR7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=FAD linked oxidase%2C N-terminal (IPR006094),FAD-binding%2C type 2 (IPR016166),FAD-linked oxidase%2C FAD-binding%2C subdomain 2 (IPR016168);NIAS_FLcDNA=J065193N01;TENOR=Os04t0360500-01;KEGG=Os04t0360500-01
Chr04	irgsp1_rep	five_prime_UTR	17263088	17263088	.	-	.	Parent=Os04t0360500-01
Chr04	irgsp1_rep	CDS	17262173	17263087	.	-	0	Parent=Os04t0360500-01
Chr04	irgsp1_rep	three_prime_UTR	17260264	17262172	.	-	.	Parent=Os04t0360500-01
Chr04	irgsp1_rep	three_prime_UTR	17258661	17259758	.	-	.	Parent=Os04t0360500-01
Chr04	irgsp1_rep	mRNA	17258899	17263021	.	+	.	ID=Os04t0360650-00;Name=Os04t0360650-00;Locus_id=Os04g0360650;Note=Hypothetical protein.;Transcript_evidence=tplb0055e22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0360650-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	17258899	17259711	.	+	0	Parent=Os04t0360650-00
Chr04	irgsp1_rep	three_prime_UTR	17259712	17259729	.	+	.	Parent=Os04t0360650-00
Chr04	irgsp1_rep	three_prime_UTR	17260242	17260531	.	+	.	Parent=Os04t0360650-00
Chr04	irgsp1_rep	three_prime_UTR	17262330	17263021	.	+	.	Parent=Os04t0360650-00
Chr04	irgsp1_rep	mRNA	17319196	17321028	.	+	.	ID=Os04t0361500-00;Name=Os04t0361500-00;Locus_id=Os04g0361500;Note=Similar to OSIGBa0111E13.1 protein.;Transcript_evidence=AK368527 (DDBJ);ORF_evidence=Q01KR7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=FAD linked oxidase%2C N-terminal (IPR006094),Plant-specific FAD-dependent oxidoreductase (IPR010030),FAD-binding%2C type 2 (IPR016166),FAD-linked oxidase%2C FAD-binding%2C subdomain 2 (IPR016168);TENOR=Os04t0361500-00;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	17319196	17321028	.	+	0	Parent=Os04t0361500-00
Chr04	irgsp1_rep	mRNA	17357016	17359831	.	-	.	ID=Os04t0362375-01;Name=Os04t0362375-01;Locus_id=Os04g0362375;Note=Hypothetical gene.;Transcript_evidence=AK241339 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065146K20;TENOR=Os04t0362375-01;KEGG=Os04t0362375-01
Chr04	irgsp1_rep	five_prime_UTR	17359831	17359831	.	-	.	Parent=Os04t0362375-01
Chr04	irgsp1_rep	CDS	17359512	17359830	.	-	0	Parent=Os04t0362375-01
Chr04	irgsp1_rep	CDS	17358627	17358667	.	-	2	Parent=Os04t0362375-01
Chr04	irgsp1_rep	three_prime_UTR	17358611	17358626	.	-	.	Parent=Os04t0362375-01
Chr04	irgsp1_rep	three_prime_UTR	17357016	17357291	.	-	.	Parent=Os04t0362375-01
Chr04	irgsp1_rep	mRNA	17372324	17373450	.	+	.	ID=Os04t0362501-00;Name=Os04t0362501-00;Locus_id=Os04g0362501;Note=Hypothetical conserved gene.;Transcript_evidence=AK074006 (DDBJ%2C Secondary hit);ORF_evidence=Q7XMF4 (UniProt);Expression=AK074006;TENOR=Os04t0362501-00;KEGG=Os04t0362501-00
Chr04	irgsp1_rep	five_prime_UTR	17372324	17372454	.	+	.	Parent=Os04t0362501-00
Chr04	irgsp1_rep	five_prime_UTR	17372797	17372908	.	+	.	Parent=Os04t0362501-00
Chr04	irgsp1_rep	CDS	17372909	17373301	.	+	0	Parent=Os04t0362501-00
Chr04	irgsp1_rep	three_prime_UTR	17373302	17373450	.	+	.	Parent=Os04t0362501-00
Chr04	irgsp1_rep	mRNA	17491617	17493883	.	-	.	ID=Os04t0363700-01;Name=Os04t0363700-01;Locus_id=Os04g0363700;Note=Nucleic acid-binding%2C OB-fold domain containing protein.;Transcript_evidence=AK070144 (DDBJ%2C Best hit);ORF_evidence=NP_192844.2 (RefSeq);GO=Biological Process: DNA replication (GO:0006260),Molecular Function: single-stranded DNA binding (GO:0003697);InterPro=Primosome PriB/single-strand DNA-binding (IPR000424),Single-strand DNA-binding (IPR011344),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=J023041C16;Expression=AK070144;TENOR=Os04t0363700-01;KEGG=Os04t0363700-01
Chr04	irgsp1_rep	five_prime_UTR	17492970	17493883	.	-	.	Parent=Os04t0363700-01
Chr04	irgsp1_rep	CDS	17492761	17492969	.	-	0	Parent=Os04t0363700-01
Chr04	irgsp1_rep	CDS	17492526	17492652	.	-	1	Parent=Os04t0363700-01
Chr04	irgsp1_rep	three_prime_UTR	17492195	17492525	.	-	.	Parent=Os04t0363700-01
Chr04	irgsp1_rep	three_prime_UTR	17491617	17492026	.	-	.	Parent=Os04t0363700-01
Chr04	irgsp1_rep	mRNA	17516536	17517311	.	+	.	ID=Os04t0363976-00;Name=Os04t0363976-00;Locus_id=Os04g0363976;Note=Similar to OSIGBa0135K14.2 protein.;Transcript_evidence=BT086276 (DDBJ);ORF_evidence=Q01LP5 (UniProt);TENOR=Os04t0363976-00
Chr04	irgsp1_rep	five_prime_UTR	17516536	17516804	.	+	.	Parent=Os04t0363976-00
Chr04	irgsp1_rep	CDS	17516805	17517311	.	+	0	Parent=Os04t0363976-00
Chr04	irgsp1_rep	mRNA	17560683	17561234	.	+	.	ID=Os04t0364800-00;Name=Os04t0364800-00;Locus_id=Os04g0364800;Note=Barwin-related endoglucanase domain containing protein.;Transcript_evidence=Q7XVA8 (UniProt);ORF_evidence=Q7XVA8 (UniProt);InterPro=Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);TENOR=Os04t0364800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	17560683	17561234	.	+	0	Parent=Os04t0364800-00
Chr04	irgsp1_rep	mRNA	17584989	17589580	.	+	.	ID=Os04t0365100-01;Name=Os04t0365100-01;Locus_id=Os04g0365100;CGSNL Gene Symbol=WAK37;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 37;Oryzabase Gene Symbol Synonym(s)=OsWAK37;Note=Similar to OSIGBa0135K14.8 protein.;Transcript_evidence=AK111580 (DDBJ%2C Best hit);ORF_evidence=Q01LQ4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=EGF-type aspartate/asparagine hydroxylation site (IPR000152),Protein kinase%2C catalytic domain (IPR000719),EGF-like calcium-binding (IPR001881),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EGF-like calcium-binding%2C conserved site (IPR018097),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013083I23;Oryzabase=8003;TENOR=Os04t0365100-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	17584989	17585047	.	+	.	Parent=Os04t0365100-01
Chr04	irgsp1_rep	CDS	17585048	17585981	.	+	0	Parent=Os04t0365100-01
Chr04	irgsp1_rep	CDS	17587349	17587495	.	+	2	Parent=Os04t0365100-01
Chr04	irgsp1_rep	CDS	17588392	17589580	.	+	2	Parent=Os04t0365100-01
Chr04	irgsp1_rep	mRNA	17634847	17636726	.	-	.	ID=Os04t0365550-00;Name=Os04t0365550-00;Locus_id=Os04g0365550;Note=Similar to OSIGBa0110B10.2 protein.;Transcript_evidence=EU973161 (DDBJ);ORF_evidence=Q01KQ6 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677);InterPro=Zinc finger%2C BED-type predicted (IPR003656),Ribonuclease H-like (IPR012337);TENOR=Os04t0365550-00
Chr04	irgsp1_rep	CDS	17635629	17636726	.	-	0	Parent=Os04t0365550-00
Chr04	irgsp1_rep	three_prime_UTR	17634847	17635628	.	-	.	Parent=Os04t0365550-00
Chr04	irgsp1_rep	mRNA	17667431	17671131	.	-	.	ID=Os04t0366000-00;Name=Os04t0366000-00;Locus_id=Os04g0366000;Note=Similar to OSIGBa0110B10.6 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01KQ2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=EGF-type aspartate/asparagine hydroxylation site (IPR000152),Protein kinase%2C catalytic domain (IPR000719),Epidermal growth factor-like%2C type 3 (IPR000742),EGF-like calcium-binding (IPR001881),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EGF-like calcium-binding%2C conserved site (IPR018097),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os04t0366000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	17670486	17671131	.	-	0	Parent=Os04t0366000-00
Chr04	irgsp1_rep	CDS	17669581	17669727	.	-	2	Parent=Os04t0366000-00
Chr04	irgsp1_rep	CDS	17668116	17669245	.	-	2	Parent=Os04t0366000-00
Chr04	irgsp1_rep	CDS	17667431	17667613	.	-	0	Parent=Os04t0366000-00
Chr04	irgsp1_rep	mRNA	17723870	17724941	.	+	.	ID=Os04t0366200-00;Name=Os04t0366200-00;Locus_id=Os04g0366200;Note=Hypothetical protein.;Transcript_evidence=tplb0037c11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0366200-00
Chr04	irgsp1_rep	five_prime_UTR	17723870	17724637	.	+	.	Parent=Os04t0366200-00
Chr04	irgsp1_rep	CDS	17724638	17724941	.	+	0	Parent=Os04t0366200-00
Chr04	irgsp1_rep	mRNA	17761013	17766782	.	-	.	ID=Os04t0367000-01;Name=Os04t0367000-01;Locus_id=Os04g0367000;Note=Hypothetical conserved gene.;Transcript_evidence=AK318524 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065057P07;TENOR=Os04t0367000-01;KEGG=Os04t0367000-01
Chr04	irgsp1_rep	five_prime_UTR	17766446	17766782	.	-	.	Parent=Os04t0367000-01
Chr04	irgsp1_rep	CDS	17765576	17766445	.	-	0	Parent=Os04t0367000-01
Chr04	irgsp1_rep	three_prime_UTR	17761013	17765575	.	-	.	Parent=Os04t0367000-01
Chr04	irgsp1_rep	mRNA	17816534	17818582	.	-	.	ID=Os04t0367201-00;Name=Os04t0367201-00;Locus_id=Os04g0367201;Note=Conserved hypothetical protein.;Transcript_evidence=EU956602 (DDBJ);ORF_evidence=Q7X863 (UniProt);TENOR=Os04t0367201-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	17817631	17818582	.	-	0	Parent=Os04t0367201-00
Chr04	irgsp1_rep	CDS	17816985	17816989	.	-	2	Parent=Os04t0367201-00
Chr04	irgsp1_rep	three_prime_UTR	17816534	17816984	.	-	.	Parent=Os04t0367201-00
Chr04	irgsp1_rep	mRNA	17838025	17839805	.	+	.	ID=Os04t0367400-01;Name=Os04t0367400-01;Locus_id=Os04g0367400;Note=Similar to OSIGBa0092J07.5 protein.;Transcript_evidence=AK100139 (DDBJ%2C Best hit);ORF_evidence=Q01KR2 (UniProt);GO=Cellular Component: endoplasmic reticulum (GO:0005783);InterPro=Reticulon (IPR003388);NIAS_FLcDNA=J023010N14;TENOR=Os04t0367400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	17838025	17838229	.	+	.	Parent=Os04t0367400-01
Chr04	irgsp1_rep	five_prime_UTR	17838310	17838490	.	+	.	Parent=Os04t0367400-01
Chr04	irgsp1_rep	five_prime_UTR	17838571	17838991	.	+	.	Parent=Os04t0367400-01
Chr04	irgsp1_rep	CDS	17838992	17839211	.	+	0	Parent=Os04t0367400-01
Chr04	irgsp1_rep	CDS	17839336	17839514	.	+	2	Parent=Os04t0367400-01
Chr04	irgsp1_rep	three_prime_UTR	17839515	17839805	.	+	.	Parent=Os04t0367400-01
Chr04	irgsp1_rep	mRNA	17838060	17839900	.	+	.	ID=Os04t0367400-02;Name=Os04t0367400-02;Locus_id=Os04g0367400;Note=Reticulon family protein.;Transcript_evidence=AK061121 (DDBJ%2C Best hit);ORF_evidence=Q01KR2 (UniProt);GO=Cellular Component: endoplasmic reticulum (GO:0005783);InterPro=Reticulon (IPR003388);NIAS_FLcDNA=006-207-G03;Expression=AK061121;TENOR=Os04t0367400-02;KEGG=Os04t0367400-02
Chr04	irgsp1_rep	five_prime_UTR	17838060	17838159	.	+	.	Parent=Os04t0367400-02
Chr04	irgsp1_rep	CDS	17838160	17838229	.	+	0	Parent=Os04t0367400-02
Chr04	irgsp1_rep	CDS	17838310	17838490	.	+	2	Parent=Os04t0367400-02
Chr04	irgsp1_rep	CDS	17839000	17839211	.	+	1	Parent=Os04t0367400-02
Chr04	irgsp1_rep	CDS	17839336	17839514	.	+	2	Parent=Os04t0367400-02
Chr04	irgsp1_rep	three_prime_UTR	17839515	17839900	.	+	.	Parent=Os04t0367400-02
Chr04	irgsp1_rep	mRNA	17865296	17867466	.	+	.	ID=Os04t0367800-01;Name=Os04t0367800-01;Locus_id=Os04g0367800;Note=Conserved hypothetical protein.;Transcript_evidence=AK101462 (DDBJ%2C Best hit);ORF_evidence=Q2QMJ6 (UniProt);NIAS_FLcDNA=J033040F19;TENOR=Os04t0367800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	17865296	17865617	.	+	0	Parent=Os04t0367800-01
Chr04	irgsp1_rep	CDS	17866351	17866403	.	+	2	Parent=Os04t0367800-01
Chr04	irgsp1_rep	three_prime_UTR	17866404	17866645	.	+	.	Parent=Os04t0367800-01
Chr04	irgsp1_rep	three_prime_UTR	17866732	17866786	.	+	.	Parent=Os04t0367800-01
Chr04	irgsp1_rep	three_prime_UTR	17867289	17867466	.	+	.	Parent=Os04t0367800-01
Chr04	irgsp1_rep	mRNA	17867856	17868771	.	-	.	ID=Os04t0367900-00;Name=Os04t0367900-00;Locus_id=Os04g0367900;Note=Similar to H0607F01.2 protein.;Transcript_evidence=AK361209 (DDBJ);ORF_evidence=Q01KQ9 (UniProt);TENOR=Os04t0367900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	17867962	17868771	.	-	0	Parent=Os04t0367900-00
Chr04	irgsp1_rep	three_prime_UTR	17867856	17867961	.	-	.	Parent=Os04t0367900-00
Chr04	irgsp1_rep	mRNA	17874313	17877280	.	-	.	ID=Os04t0368000-01;Name=Os04t0368000-01;Locus_id=Os04g0368000;CGSNL Gene Symbol=WAK43;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 43;Oryzabase Gene Symbol Synonym(s)=OsWAK43;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK241855 (DDBJ%2C Best hit);ORF_evidence=B7F891 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=EGF-type aspartate/asparagine hydroxylation site (IPR000152),Protein kinase%2C catalytic domain (IPR000719),EGF-like calcium-binding (IPR001881),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),EGF-like calcium-binding%2C conserved site (IPR018097);NIAS_FLcDNA=J065215M06;Oryzabase=6939;TENOR=Os04t0368000-01;KEGG=Os04t0368000-01
Chr04	irgsp1_rep	five_prime_UTR	17877149	17877280	.	-	.	Parent=Os04t0368000-01
Chr04	irgsp1_rep	CDS	17876248	17877148	.	-	0	Parent=Os04t0368000-01
Chr04	irgsp1_rep	CDS	17875781	17875948	.	-	2	Parent=Os04t0368000-01
Chr04	irgsp1_rep	CDS	17874502	17875652	.	-	2	Parent=Os04t0368000-01
Chr04	irgsp1_rep	three_prime_UTR	17874313	17874501	.	-	.	Parent=Os04t0368000-01
Chr04	irgsp1_rep	mRNA	17888146	17891574	.	-	.	ID=Os04t0368300-00;Name=Os04t0368300-00;Locus_id=Os04g0368300;CGSNL Gene Symbol=RLCK142;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 142;Oryzabase Gene Symbol Synonym(s)=OsRLCK142;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 142;Note=Similar to H0607F01.5 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01LL1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),EGF-like calcium-binding (IPR001881),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),EGF-like calcium-binding%2C conserved site (IPR018097),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18847;TENOR=Os04t0368300-00
Chr04	irgsp1_rep	CDS	17890689	17891574	.	-	0	Parent=Os04t0368300-00
Chr04	irgsp1_rep	CDS	17889419	17889583	.	-	2	Parent=Os04t0368300-00
Chr04	irgsp1_rep	CDS	17888146	17889293	.	-	2	Parent=Os04t0368300-00
Chr04	irgsp1_rep	mRNA	17906318	17909802	.	-	.	ID=Os04t0368800-00;Name=Os04t0368800-00;Locus_id=Os04g0368800;CGSNL Gene Symbol=WAK45;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 45;Oryzabase Gene Symbol Synonym(s)=OsWAK45%2C OsRLCK143%2C RLCK143;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 143;Note=Similar to H0607F01.6 protein.;Transcript_evidence=EU956686 (DDBJ);ORF_evidence=Q01LL0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=EGF-type aspartate/asparagine hydroxylation site (IPR000152),Protein kinase%2C catalytic domain (IPR000719),Epidermal growth factor-like%2C type 3 (IPR000742),EGF-like calcium-binding (IPR001881),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),EGF-like calcium-binding%2C conserved site (IPR018097),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=6941;TENOR=Os04t0368800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	17908807	17909802	.	-	0	Parent=Os04t0368800-00
Chr04	irgsp1_rep	CDS	17907927	17908167	.	-	0	Parent=Os04t0368800-00
Chr04	irgsp1_rep	CDS	17906318	17907447	.	-	2	Parent=Os04t0368800-00
Chr04	irgsp1_rep	mRNA	17913242	17914650	.	-	.	ID=Os04t0369000-01;Name=Os04t0369000-01;Locus_id=Os04g0369000;CGSNL Gene Symbol=RLCK144;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 144;Oryzabase Gene Symbol Synonym(s)=OsRLCK144;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 144;Note=PapD-like domain containing protein.;Transcript_evidence=AK119916 (DDBJ%2C Best hit);ORF_evidence=Q01LK9 (UniProt);GO=Molecular Function: structural molecule activity (GO:0005198);InterPro=Major sperm protein (IPR000535),PapD-like (IPR008962);NIAS_FLcDNA=002-183-F10;Oryzabase=18848;Expression=AK119916;TENOR=Os04t0369000-01;KEGG=Os04t0369000-01
Chr04	irgsp1_rep	five_prime_UTR	17913851	17914650	.	-	.	Parent=Os04t0369000-01
Chr04	irgsp1_rep	CDS	17913437	17913850	.	-	0	Parent=Os04t0369000-01
Chr04	irgsp1_rep	three_prime_UTR	17913242	17913436	.	-	.	Parent=Os04t0369000-01
Chr04	irgsp1_rep	mRNA	17913568	17916709	.	+	.	ID=Os04t0369033-00;Name=Os04t0369033-00;Locus_id=Os04g0369033;Note=Non-protein coding transcript.;Transcript_evidence=tplb0060i13 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os04t0369033-00
Chr04	irgsp1_rep	exon	17913568	17913808	.	+	.	Parent=Os04t0369033-00
Chr04	irgsp1_rep	exon	17915326	17915591	.	+	.	Parent=Os04t0369033-00
Chr04	irgsp1_rep	exon	17915679	17915836	.	+	.	Parent=Os04t0369033-00
Chr04	irgsp1_rep	exon	17915920	17916137	.	+	.	Parent=Os04t0369033-00
Chr04	irgsp1_rep	exon	17916263	17916500	.	+	.	Parent=Os04t0369033-00
Chr04	irgsp1_rep	exon	17916629	17916709	.	+	.	Parent=Os04t0369033-00
Chr04	irgsp1_rep	mRNA	17915386	17916778	.	-	.	ID=Os04t0369066-00;Name=Os04t0369066-00;Locus_id=Os04g0369066;CGSNL Gene Symbol=RLCK144;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 144;Oryzabase Gene Symbol Synonym(s)=OsRLCK144;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 144;Note=Similar to H0607F01.7 protein.;Transcript_evidence=EU942861 (DDBJ);ORF_evidence=Q01LK9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18848;TENOR=Os04t0369066-00
Chr04	irgsp1_rep	CDS	17916641	17916778	.	-	0	Parent=Os04t0369066-00
Chr04	irgsp1_rep	CDS	17916260	17916518	.	-	0	Parent=Os04t0369066-00
Chr04	irgsp1_rep	CDS	17915904	17916135	.	-	2	Parent=Os04t0369066-00
Chr04	irgsp1_rep	CDS	17915386	17915827	.	-	1	Parent=Os04t0369066-00
Chr04	irgsp1_rep	mRNA	17929442	17940263	.	+	.	ID=Os04t0369100-00;Name=Os04t0369100-00;Locus_id=Os04g0369100;CGSNL Gene Symbol=RLCK145;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 145;Oryzabase Gene Symbol Synonym(s)=OsRLCK145;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 145;Note=Similar to H0607F01.9 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01LK7 (UniProt);InterPro=Mannose-binding lectin (IPR001229);Oryzabase=18849;TENOR=Os04t0369100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	17929442	17929540	.	+	0	Parent=Os04t0369100-00
Chr04	irgsp1_rep	CDS	17932213	17932413	.	+	0	Parent=Os04t0369100-00
Chr04	irgsp1_rep	CDS	17936582	17936794	.	+	0	Parent=Os04t0369100-00
Chr04	irgsp1_rep	CDS	17936939	17937211	.	+	0	Parent=Os04t0369100-00
Chr04	irgsp1_rep	CDS	17937317	17937514	.	+	0	Parent=Os04t0369100-00
Chr04	irgsp1_rep	CDS	17938176	17938445	.	+	0	Parent=Os04t0369100-00
Chr04	irgsp1_rep	CDS	17939546	17939746	.	+	0	Parent=Os04t0369100-00
Chr04	irgsp1_rep	CDS	17939988	17940263	.	+	0	Parent=Os04t0369100-00
Chr04	irgsp1_rep	mRNA	17960744	17962821	.	-	.	ID=Os04t0369600-00;Name=Os04t0369600-00;Locus_id=Os04g0369600;Note=Similar to OSIGBa0107E14.3 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01KP8 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515);InterPro=EGF-type aspartate/asparagine hydroxylation site (IPR000152),Epidermal growth factor-like%2C type 3 (IPR000742),EGF-like calcium-binding (IPR001881),Epidermal growth factor-like (IPR006210),EGF-like calcium-binding%2C conserved site (IPR018097);TENOR=Os04t0369600-00;KEGG=Os04t0369600-00
Chr04	irgsp1_rep	CDS	17961879	17962821	.	-	0	Parent=Os04t0369600-00
Chr04	irgsp1_rep	CDS	17960961	17961137	.	-	2	Parent=Os04t0369600-00
Chr04	irgsp1_rep	CDS	17960744	17960778	.	-	2	Parent=Os04t0369600-00
Chr04	irgsp1_rep	mRNA	18001019	18005396	.	-	.	ID=Os04t0370100-01;Name=Os04t0370100-01;Locus_id=Os04g0370100;CGSNL Gene Symbol=WAK46;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 46;Oryzabase Gene Symbol Synonym(s)=OsWAK46;Note=Similar to OSIGBa0107E14.7 protein.;Transcript_evidence=AK072627 (DDBJ%2C Best hit);ORF_evidence=Q01KP4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=EGF-type aspartate/asparagine hydroxylation site (IPR000152),Protein kinase%2C catalytic domain (IPR000719),EGF-like calcium-binding (IPR001881),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),EGF-like calcium-binding%2C conserved site (IPR018097),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023126M10;Oryzabase=6942;TENOR=Os04t0370100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	18005336	18005396	.	-	.	Parent=Os04t0370100-01
Chr04	irgsp1_rep	CDS	18004378	18005335	.	-	0	Parent=Os04t0370100-01
Chr04	irgsp1_rep	CDS	18002593	18002757	.	-	2	Parent=Os04t0370100-01
Chr04	irgsp1_rep	CDS	18001306	18002483	.	-	2	Parent=Os04t0370100-01
Chr04	irgsp1_rep	three_prime_UTR	18001019	18001305	.	-	.	Parent=Os04t0370100-01
Chr04	irgsp1_rep	mRNA	18012199	18015102	.	+	.	ID=Os04t0370300-01;Name=Os04t0370300-01;Locus_id=Os04g0370300;Note=Similar to OSIGBa0107E14.10 protein.;Transcript_evidence=AK065364 (DDBJ%2C Best hit);ORF_evidence=Q01KP1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810);NIAS_FLcDNA=J013007K15;Expression=AK065364;TENOR=Os04t0370300-01;KEGG=Os04t0370300-01
Chr04	irgsp1_rep	five_prime_UTR	18012199	18012420	.	+	.	Parent=Os04t0370300-01
Chr04	irgsp1_rep	five_prime_UTR	18013134	18013190	.	+	.	Parent=Os04t0370300-01
Chr04	irgsp1_rep	CDS	18013191	18013769	.	+	0	Parent=Os04t0370300-01
Chr04	irgsp1_rep	three_prime_UTR	18013770	18015102	.	+	.	Parent=Os04t0370300-01
Chr04	irgsp1_rep	mRNA	18024564	18026012	.	+	.	ID=Os04t0370500-00;Name=Os04t0370500-00;Locus_id=Os04g0370500;Oryzabase Gene Symbol Synonym(s)=Os_F0607;Note=Similar to OSIGBa0107E14.10 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01KP1 (UniProt);InterPro=Leucine-rich repeat%2C cysteine-containing subtype (IPR006553);Oryzabase=17445;TENOR=Os04t0370500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	18024564	18026012	.	+	0	Parent=Os04t0370500-00
Chr04	irgsp1_rep	mRNA	18027729	18030493	.	+	.	ID=Os04t0370600-01;Name=Os04t0370600-01;Locus_id=Os04g0370600;Oryzabase Gene Symbol Synonym(s)=Os_F0687;Note=Leucine-rich repeat%2C cysteine-containing subtype domain containing protein.;Transcript_evidence=AK103855 (DDBJ%2C Best hit);ORF_evidence=Q01LI6 (UniProt);InterPro=Leucine-rich repeat%2C cysteine-containing subtype (IPR006553);NIAS_FLcDNA=J033148N10;Oryzabase=17446;Expression=AK103855;TENOR=Os04t0370600-01;KEGG=Os04t0370600-01
Chr04	irgsp1_rep	five_prime_UTR	18027729	18027960	.	+	.	Parent=Os04t0370600-01
Chr04	irgsp1_rep	five_prime_UTR	18028629	18028684	.	+	.	Parent=Os04t0370600-01
Chr04	irgsp1_rep	CDS	18028685	18030124	.	+	0	Parent=Os04t0370600-01
Chr04	irgsp1_rep	three_prime_UTR	18030125	18030493	.	+	.	Parent=Os04t0370600-01
Chr04	irgsp1_rep	mRNA	18042195	18049429	.	-	.	ID=Os04t0370900-01;Name=Os04t0370900-01;Locus_id=Os04g0370900;Note=Similar to H0607F01.5 protein.;Transcript_evidence=AK240639 (DDBJ%2C Best hit);ORF_evidence=Q01LL1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=EGF-type aspartate/asparagine hydroxylation site (IPR000152),Protein kinase%2C catalytic domain (IPR000719),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),EGF-like calcium-binding%2C conserved site (IPR018097);NIAS_FLcDNA=J013067H13;TENOR=Os04t0370900-01
Chr04	irgsp1_rep	five_prime_UTR	18049395	18049429	.	-	.	Parent=Os04t0370900-01
Chr04	irgsp1_rep	CDS	18048470	18049394	.	-	0	Parent=Os04t0370900-01
Chr04	irgsp1_rep	CDS	18043772	18043936	.	-	2	Parent=Os04t0370900-01
Chr04	irgsp1_rep	CDS	18042433	18043616	.	-	2	Parent=Os04t0370900-01
Chr04	irgsp1_rep	three_prime_UTR	18042195	18042432	.	-	.	Parent=Os04t0370900-01
Chr04	irgsp1_rep	mRNA	18042184	18049308	.	-	.	ID=Os04t0370900-02;Name=Os04t0370900-02;Locus_id=Os04g0370900;Note=Similar to cDNA%2C clone: J013067H13%2C full insert sequence.;Transcript_evidence=AK241309 (DDBJ%2C Best hit);ORF_evidence=B7F891 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=EGF-type aspartate/asparagine hydroxylation site (IPR000152),Protein kinase%2C catalytic domain (IPR000719),EGF-like calcium-binding (IPR001881),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),EGF-like calcium-binding%2C conserved site (IPR018097),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J065141A20;TENOR=Os04t0370900-02
Chr04	irgsp1_rep	five_prime_UTR	18049308	18049308	.	-	.	Parent=Os04t0370900-02
Chr04	irgsp1_rep	CDS	18048470	18049307	.	-	0	Parent=Os04t0370900-02
Chr04	irgsp1_rep	CDS	18043772	18043936	.	-	2	Parent=Os04t0370900-02
Chr04	irgsp1_rep	CDS	18042433	18043616	.	-	2	Parent=Os04t0370900-02
Chr04	irgsp1_rep	three_prime_UTR	18042184	18042432	.	-	.	Parent=Os04t0370900-02
Chr04	irgsp1_rep	mRNA	18056917	18057576	.	-	.	ID=Os04t0371000-00;Name=Os04t0371000-00;Locus_id=Os04g0371000;Note=Four-helical cytokine family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B7F891 (UniProt);TENOR=Os04t0371000-00;KEGG=Os04t0371000-00
Chr04	irgsp1_rep	CDS	18056917	18057576	.	-	0	Parent=Os04t0371000-00
Chr04	irgsp1_rep	mRNA	18061313	18064800	.	-	.	ID=Os04t0371100-00;Name=Os04t0371100-00;Locus_id=Os04g0371100;CGSNL Gene Symbol=WAK47;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 47;Oryzabase Gene Symbol Synonym(s)=OsWAK47%2C OsRLCK147%2C RLCK147;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 147;Note=Similar to OSIGBa0134J07.7 protein.;Transcript_evidence=tplb0033j18 (Wheat FLcDNA);ORF_evidence=Q01LI2 (UniProt);Oryzabase=6943;TENOR=Os04t0371100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	18064042	18064800	.	-	0	Parent=Os04t0371100-00
Chr04	irgsp1_rep	three_prime_UTR	18063938	18064041	.	-	.	Parent=Os04t0371100-00
Chr04	irgsp1_rep	three_prime_UTR	18062769	18062909	.	-	.	Parent=Os04t0371100-00
Chr04	irgsp1_rep	three_prime_UTR	18061313	18062655	.	-	.	Parent=Os04t0371100-00
Chr04	irgsp1_rep	mRNA	18071437	18072738	.	-	.	ID=Os04t0371200-00;Name=Os04t0371200-00;Locus_id=Os04g0371200;CGSNL Gene Symbol=RLCK148;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 148;Oryzabase Gene Symbol Synonym(s)=OsRLCK148;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 148;Note=Similar to OSIGBa0134J07.8 protein.;Transcript_evidence=EU503189 (DDBJ);ORF_evidence=Q01LI1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18851;TENOR=Os04t0371200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	18071437	18072738	.	-	0	Parent=Os04t0371200-00
Chr04	irgsp1_rep	mRNA	18089033	18092083	.	-	.	ID=Os04t0371500-00;Name=Os04t0371500-00;Locus_id=Os04g0371500;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0014n19 (Wheat FLcDNA);ORF_evidence=B8AS88 (UniProt);TENOR=Os04t0371500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	18091858	18092083	.	-	.	Parent=Os04t0371500-00
Chr04	irgsp1_rep	CDS	18091534	18091857	.	-	0	Parent=Os04t0371500-00
Chr04	irgsp1_rep	three_prime_UTR	18089033	18091533	.	-	.	Parent=Os04t0371500-00
Chr04	irgsp1_rep	mRNA	18096179	18098734	.	+	.	ID=Os04t0371600-01;Name=Os04t0371600-01;Locus_id=Os04g0371600;Note=Leucine-rich repeat%2C cysteine-containing containing protein.;Transcript_evidence=AK240922 (DDBJ%2C Best hit);ORF_evidence=Q01LI6 (UniProt);NIAS_FLcDNA=J065038H08;TENOR=Os04t0371600-01;KEGG=Os04t0371600-01
Chr04	irgsp1_rep	five_prime_UTR	18096179	18096345	.	+	.	Parent=Os04t0371600-01
Chr04	irgsp1_rep	five_prime_UTR	18097053	18097215	.	+	.	Parent=Os04t0371600-01
Chr04	irgsp1_rep	CDS	18097216	18098118	.	+	0	Parent=Os04t0371600-01
Chr04	irgsp1_rep	three_prime_UTR	18098119	18098734	.	+	.	Parent=Os04t0371600-01
Chr04	irgsp1_rep	mRNA	18125099	18136512	.	+	.	ID=Os04t0372100-00;Name=Os04t0372100-00;Locus_id=Os04g0372100;CGSNL Gene Symbol=WAK49;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 49;Oryzabase Gene Symbol Synonym(s)=OsWAK49;Note=Similar to OSIGBa0107E14.7 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01KP4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=6945;TENOR=Os04t0372100-00
Chr04	irgsp1_rep	CDS	18125099	18126050	.	+	0	Parent=Os04t0372100-00
Chr04	irgsp1_rep	CDS	18136259	18136512	.	+	2	Parent=Os04t0372100-00
Chr04	irgsp1_rep	mRNA	18131620	18133626	.	+	.	ID=Os04t0372201-01;Name=Os04t0372201-01;Locus_id=Os04g0372201;Note=Conserved hypothetical protein.;Transcript_evidence=AK289041 (DDBJ%2C Best hit),AK287965 (DDBJ%2C Best hit);ORF_evidence=NP_001066490.1 (RefSeq);NIAS_FLcDNA=J090092C04,J075066J11;TENOR=Os04t0372201-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	18131620	18132379	.	+	.	Parent=Os04t0372201-01
Chr04	irgsp1_rep	CDS	18132380	18132619	.	+	0	Parent=Os04t0372201-01
Chr04	irgsp1_rep	three_prime_UTR	18132620	18133626	.	+	.	Parent=Os04t0372201-01
Chr04	irgsp1_rep	mRNA	18149383	18150888	.	+	.	ID=Os04t0372400-01;Name=Os04t0372400-01;Locus_id=Os04g0372400;Note=Conserved hypothetical protein.;Transcript_evidence=AK107450 (DDBJ%2C Best hit);ORF_evidence=Q69K09 (UniProt);NIAS_FLcDNA=002-128-C04;TENOR=Os04t0372400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	18149383	18149734	.	+	.	Parent=Os04t0372400-01
Chr04	irgsp1_rep	CDS	18149735	18150112	.	+	0	Parent=Os04t0372400-01
Chr04	irgsp1_rep	three_prime_UTR	18150113	18150888	.	+	.	Parent=Os04t0372400-01
Chr04	irgsp1_rep	mRNA	18168726	18170981	.	+	.	ID=Os04t0372700-01;Name=Os04t0372700-01;Locus_id=Os04g0372700;Note=Similar to Quinone-oxidoreductase QR1 (Fragment).;Transcript_evidence=AK062814 (DDBJ%2C Best hit);ORF_evidence=Q01KT3 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),GroES-like (IPR011032),Alcohol dehydrogenase GroES-like (IPR013154);NIAS_FLcDNA=001-107-E05;Expression=AK062814;TENOR=Os04t0372700-01;KEGG=Os04t0372700-01
Chr04	irgsp1_rep	five_prime_UTR	18168726	18168898	.	+	.	Parent=Os04t0372700-01
Chr04	irgsp1_rep	CDS	18168899	18168982	.	+	0	Parent=Os04t0372700-01
Chr04	irgsp1_rep	CDS	18169980	18170121	.	+	0	Parent=Os04t0372700-01
Chr04	irgsp1_rep	CDS	18170821	18170981	.	+	2	Parent=Os04t0372700-01
Chr04	irgsp1_rep	mRNA	18171104	18171646	.	-	.	ID=Os04t0372750-00;Name=Os04t0372750-00;Locus_id=Os04g0372750;Note=Non-protein coding transcript.;Transcript_evidence=EU945918 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0372750-00
Chr04	irgsp1_rep	exon	18171104	18171646	.	-	.	Parent=Os04t0372750-00
Chr04	irgsp1_rep	mRNA	18171653	18171807	.	-	.	ID=Os04t0372775-00;Name=Os04t0372775-00;Locus_id=Os04g0372775;Note=Non-protein coding transcript.;Transcript_evidence=AJ234449 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0372775-00
Chr04	irgsp1_rep	exon	18171653	18171807	.	-	.	Parent=Os04t0372775-00
Chr04	irgsp1_rep	mRNA	18172160	18177058	.	-	.	ID=Os04t0372800-01;Name=Os04t0372800-01;Locus_id=Os04g0372800;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK101615 (DDBJ%2C Best hit);ORF_evidence=Q01KT2 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: intracellular (GO:0005622),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nuclear transport factor 2 (IPR002075),Nucleotide-binding%2C alpha-beta plait (IPR012677),Nuclear transport factor 2%2C Eukaryote (IPR018222);NIAS_FLcDNA=J033052F07;TENOR=Os04t0372800-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	18176979	18177058	.	-	.	Parent=Os04t0372800-01
Chr04	irgsp1_rep	CDS	18176913	18176978	.	-	0	Parent=Os04t0372800-01
Chr04	irgsp1_rep	CDS	18176691	18176834	.	-	0	Parent=Os04t0372800-01
Chr04	irgsp1_rep	CDS	18176252	18176585	.	-	0	Parent=Os04t0372800-01
Chr04	irgsp1_rep	CDS	18175916	18176163	.	-	2	Parent=Os04t0372800-01
Chr04	irgsp1_rep	CDS	18175097	18175259	.	-	0	Parent=Os04t0372800-01
Chr04	irgsp1_rep	CDS	18174891	18175012	.	-	2	Parent=Os04t0372800-01
Chr04	irgsp1_rep	CDS	18174733	18174798	.	-	0	Parent=Os04t0372800-01
Chr04	irgsp1_rep	CDS	18173231	18173297	.	-	0	Parent=Os04t0372800-01
Chr04	irgsp1_rep	CDS	18172515	18172765	.	-	2	Parent=Os04t0372800-01
Chr04	irgsp1_rep	three_prime_UTR	18172160	18172514	.	-	.	Parent=Os04t0372800-01
Chr04	irgsp1_rep	mRNA	18189000	18193537	.	+	.	ID=Os04t0373000-00;Name=Os04t0373000-00;Locus_id=Os04g0373000;Note=Similar to OSIGBa0140A01.9 protein.;Transcript_evidence=BT061625 (DDBJ);ORF_evidence=Q01KT0 (UniProt);InterPro=Protein of unknown function DUF803 (IPR008521);TENOR=Os04t0373000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	18189000	18189176	.	+	.	Parent=Os04t0373000-00
Chr04	irgsp1_rep	five_prime_UTR	18190629	18190759	.	+	.	Parent=Os04t0373000-00
Chr04	irgsp1_rep	CDS	18190760	18190793	.	+	0	Parent=Os04t0373000-00
Chr04	irgsp1_rep	CDS	18190967	18191023	.	+	2	Parent=Os04t0373000-00
Chr04	irgsp1_rep	CDS	18191203	18191293	.	+	2	Parent=Os04t0373000-00
Chr04	irgsp1_rep	CDS	18191378	18191538	.	+	1	Parent=Os04t0373000-00
Chr04	irgsp1_rep	CDS	18192009	18192136	.	+	2	Parent=Os04t0373000-00
Chr04	irgsp1_rep	CDS	18192219	18192356	.	+	0	Parent=Os04t0373000-00
Chr04	irgsp1_rep	CDS	18192799	18192891	.	+	0	Parent=Os04t0373000-00
Chr04	irgsp1_rep	CDS	18193379	18193537	.	+	0	Parent=Os04t0373000-00
Chr04	irgsp1_rep	mRNA	18200859	18203780	.	+	.	ID=Os04t0373150-00;Name=Os04t0373150-00;Locus_id=Os04g0373150;Note=Hypothetical protein.;Transcript_evidence=tplb0061h22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0373150-00
Chr04	irgsp1_rep	five_prime_UTR	18200859	18202004	.	+	.	Parent=Os04t0373150-00
Chr04	irgsp1_rep	five_prime_UTR	18203290	18203294	.	+	.	Parent=Os04t0373150-00
Chr04	irgsp1_rep	CDS	18203295	18203780	.	+	0	Parent=Os04t0373150-00
Chr04	irgsp1_rep	mRNA	18212946	18216660	.	+	.	ID=Os04t0373400-01;Name=Os04t0373400-01;Locus_id=Os04g0373400;Note=Similar to MATE efflux family protein%2C expressed.;Transcript_evidence=AK243650 (DDBJ%2C Best hit);ORF_evidence=Q10A00 (UniProt);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);NIAS_FLcDNA=J100088H20;TENOR=Os04t0373400-01;KEGG=Os04t0373400-01
Chr04	irgsp1_rep	five_prime_UTR	18212946	18213061	.	+	.	Parent=Os04t0373400-01
Chr04	irgsp1_rep	CDS	18213062	18213322	.	+	0	Parent=Os04t0373400-01
Chr04	irgsp1_rep	CDS	18213808	18214352	.	+	0	Parent=Os04t0373400-01
Chr04	irgsp1_rep	CDS	18214851	18214937	.	+	1	Parent=Os04t0373400-01
Chr04	irgsp1_rep	CDS	18215020	18215076	.	+	1	Parent=Os04t0373400-01
Chr04	irgsp1_rep	CDS	18215224	18215462	.	+	1	Parent=Os04t0373400-01
Chr04	irgsp1_rep	CDS	18215657	18215775	.	+	2	Parent=Os04t0373400-01
Chr04	irgsp1_rep	CDS	18216008	18216094	.	+	0	Parent=Os04t0373400-01
Chr04	irgsp1_rep	CDS	18216215	18216271	.	+	0	Parent=Os04t0373400-01
Chr04	irgsp1_rep	three_prime_UTR	18216272	18216660	.	+	.	Parent=Os04t0373400-01
Chr04	irgsp1_rep	mRNA	18258101	18259533	.	-	.	ID=Os04t0374400-00;Name=Os04t0374400-00;Locus_id=Os04g0374400;Note=Hypothetical conserved gene.;Transcript_evidence=AK376479 (DDBJ);ORF_evidence=A2YQP7 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os04t0374400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	18259485	18259533	.	-	.	Parent=Os04t0374400-00
Chr04	irgsp1_rep	CDS	18258222	18259484	.	-	0	Parent=Os04t0374400-00
Chr04	irgsp1_rep	three_prime_UTR	18258101	18258221	.	-	.	Parent=Os04t0374400-00
Chr04	irgsp1_rep	mRNA	18273669	18274223	.	-	.	ID=Os04t0374601-00;Name=Os04t0374601-00;Locus_id=Os04g0374601;Note=Transferase domain containing protein.;Transcript_evidence=EU946130 (DDBJ);ORF_evidence=Q7XVL2 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os04t0374601-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	18273732	18274223	.	-	0	Parent=Os04t0374601-00
Chr04	irgsp1_rep	three_prime_UTR	18273669	18273731	.	-	.	Parent=Os04t0374601-00
Chr04	irgsp1_rep	mRNA	18318639	18322459	.	+	.	ID=Os04t0375300-00;Name=Os04t0375300-00;Locus_id=Os04g0375300;Oryzabase Gene Symbol Synonym(s)=rNBS56;Oryzabase Gene Name Synonym(s)=NBS-LRR protein rNBS56;Note=Similar to NBS-LRR protein (Fragment).;Transcript_evidence=ab initio prediction;ORF_evidence=Q8LK99 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);Oryzabase=15950;TENOR=Os04t0375300-00;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	18318639	18320360	.	+	0	Parent=Os04t0375300-00
Chr04	irgsp1_rep	CDS	18320673	18321801	.	+	0	Parent=Os04t0375300-00
Chr04	irgsp1_rep	CDS	18322392	18322459	.	+	2	Parent=Os04t0375300-00
Chr04	irgsp1_rep	mRNA	18331750	18332254	.	+	.	ID=Os04t0375400-00;Name=Os04t0375400-00;Locus_id=Os04g0375400;Note=Similar to Calmodulin.;Transcript_evidence=Y13974 (DDBJ);ORF_evidence=B1NDI5 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand-like domain (IPR011992),EF-HAND 2 (IPR018249);TENOR=Os04t0375400-00
Chr04	irgsp1_rep	CDS	18331750	18331841	.	+	0	Parent=Os04t0375400-00
Chr04	irgsp1_rep	CDS	18332089	18332131	.	+	1	Parent=Os04t0375400-00
Chr04	irgsp1_rep	three_prime_UTR	18332132	18332254	.	+	.	Parent=Os04t0375400-00
Chr04	irgsp1_rep	mRNA	18357875	18358718	.	+	.	ID=Os04t0375750-00;Name=Os04t0375750-00;Locus_id=Os04g0375750;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);InterPro=Ribonuclease H1%2C N-terminal (IPR011320);TENOR=Os04t0375750-00
Chr04	irgsp1_rep	five_prime_UTR	18357875	18357878	.	+	.	Parent=Os04t0375750-00
Chr04	irgsp1_rep	CDS	18357879	18358718	.	+	0	Parent=Os04t0375750-00
Chr04	irgsp1_rep	mRNA	18361265	18366200	.	-	.	ID=Os04t0375900-01;Name=Os04t0375900-01;Locus_id=Os04g0375900;Note=Kinesin%2C motor region domain containing protein.;Transcript_evidence=AK101769 (DDBJ%2C Best hit);ORF_evidence=B9FES1 (UniProt);GO=Biological Process: DNA repair (GO:0006281),Biological Process: microtubule-based movement (GO:0007018),Molecular Function: DNA binding (GO:0003677),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752),Helix-hairpin-helix DNA-binding motif%2C class 1 (IPR003583);NIAS_FLcDNA=J033064H15;Expression=AK101769;TENOR=Os04t0375900-01;KEGG=Os04t0375900-01
Chr04	irgsp1_rep	five_prime_UTR	18366106	18366200	.	-	.	Parent=Os04t0375900-01
Chr04	irgsp1_rep	CDS	18365906	18366105	.	-	0	Parent=Os04t0375900-01
Chr04	irgsp1_rep	CDS	18365595	18365808	.	-	1	Parent=Os04t0375900-01
Chr04	irgsp1_rep	CDS	18364958	18365161	.	-	0	Parent=Os04t0375900-01
Chr04	irgsp1_rep	CDS	18364671	18364863	.	-	0	Parent=Os04t0375900-01
Chr04	irgsp1_rep	CDS	18364377	18364579	.	-	2	Parent=Os04t0375900-01
Chr04	irgsp1_rep	CDS	18363615	18363871	.	-	0	Parent=Os04t0375900-01
Chr04	irgsp1_rep	CDS	18363428	18363526	.	-	1	Parent=Os04t0375900-01
Chr04	irgsp1_rep	CDS	18363322	18363355	.	-	1	Parent=Os04t0375900-01
Chr04	irgsp1_rep	CDS	18363125	18363199	.	-	0	Parent=Os04t0375900-01
Chr04	irgsp1_rep	CDS	18362988	18363038	.	-	0	Parent=Os04t0375900-01
Chr04	irgsp1_rep	CDS	18362808	18362912	.	-	0	Parent=Os04t0375900-01
Chr04	irgsp1_rep	CDS	18362656	18362728	.	-	0	Parent=Os04t0375900-01
Chr04	irgsp1_rep	CDS	18362312	18362568	.	-	2	Parent=Os04t0375900-01
Chr04	irgsp1_rep	CDS	18362153	18362199	.	-	0	Parent=Os04t0375900-01
Chr04	irgsp1_rep	CDS	18362050	18362071	.	-	1	Parent=Os04t0375900-01
Chr04	irgsp1_rep	CDS	18361909	18361977	.	-	0	Parent=Os04t0375900-01
Chr04	irgsp1_rep	CDS	18361767	18361808	.	-	0	Parent=Os04t0375900-01
Chr04	irgsp1_rep	CDS	18361520	18361555	.	-	0	Parent=Os04t0375900-01
Chr04	irgsp1_rep	three_prime_UTR	18361265	18361519	.	-	.	Parent=Os04t0375900-01
Chr04	irgsp1_rep	mRNA	18369364	18371131	.	-	.	ID=Os04t0376000-01;Name=Os04t0376000-01;Locus_id=Os04g0376000;Oryzabase Gene Name Synonym(s)=Ribosomal protein L35;Note=Similar to 60S ribosomal protein L35-1.;Transcript_evidence=AK064842 (DDBJ%2C Best hit);ORF_evidence=NP_001148517.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L29 (IPR001854);NIAS_FLcDNA=J013000G06;Oryzabase=17677;Expression=AK064842;TENOR=Os04t0376000-01;KEGG=Os04t0376000-01
Chr04	irgsp1_rep	five_prime_UTR	18371063	18371131	.	-	.	Parent=Os04t0376000-01
Chr04	irgsp1_rep	CDS	18371059	18371062	.	-	0	Parent=Os04t0376000-01
Chr04	irgsp1_rep	CDS	18370827	18370962	.	-	2	Parent=Os04t0376000-01
Chr04	irgsp1_rep	CDS	18370579	18370735	.	-	1	Parent=Os04t0376000-01
Chr04	irgsp1_rep	CDS	18369500	18369574	.	-	0	Parent=Os04t0376000-01
Chr04	irgsp1_rep	three_prime_UTR	18369364	18369499	.	-	.	Parent=Os04t0376000-01
Chr04	irgsp1_rep	mRNA	18371632	18375556	.	-	.	ID=Os04t0376100-01;Name=Os04t0376100-01;Locus_id=Os04g0376100;Note=Mitochondrial import inner membrane translocase%2C subunit Tim17/22 family protein.;Transcript_evidence=AK102582 (DDBJ%2C Best hit);ORF_evidence=NP_001150698.1 (RefSeq);InterPro=Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 (IPR003397);NIAS_FLcDNA=J033098C18;Expression=AK102582;TENOR=Os04t0376100-01;KEGG=Os04t0376100-01
Chr04	irgsp1_rep	five_prime_UTR	18375518	18375556	.	-	.	Parent=Os04t0376100-01
Chr04	irgsp1_rep	CDS	18375412	18375517	.	-	0	Parent=Os04t0376100-01
Chr04	irgsp1_rep	CDS	18375204	18375317	.	-	2	Parent=Os04t0376100-01
Chr04	irgsp1_rep	CDS	18373643	18373747	.	-	2	Parent=Os04t0376100-01
Chr04	irgsp1_rep	CDS	18371907	18372175	.	-	2	Parent=Os04t0376100-01
Chr04	irgsp1_rep	three_prime_UTR	18371632	18371906	.	-	.	Parent=Os04t0376100-01
Chr04	irgsp1_rep	mRNA	18379186	18380298	.	+	.	ID=Os04t0376200-00;Name=Os04t0376200-00;Locus_id=Os04g0376200;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001173900.1 (RefSeq);TENOR=Os04t0376200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	18379186	18380298	.	+	0	Parent=Os04t0376200-00
Chr04	irgsp1_rep	mRNA	18382740	18387888	.	-	.	ID=Os04t0376300-01;Name=Os04t0376300-01;Locus_id=Os04g0376300;RAP-DB Gene Symbol Synonym(s)=OsPLS4;RAP-DB Gene Name Synonym(s)=Premature Leaf Senescence 4;Oryzabase Gene Name Synonym(s)=3-Oxoacyl-[acyl-carrier-protein] reductase;Note=3-oxoacyl-reductase%2C Cuticular wax biosynthesis and chloroplast development%2C Leaf senescence%2C Chilling tolerance;Transcript_evidence=AK112050 (truncated),Inferred from literature;ORF_evidence=Q7XMI8;GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity (GO:0004316),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: NAD binding (GO:0051287);InterPro=NAD(P)-binding domain superfamily (IPR036291),Short-chain dehydrogenase/reductase SDR (IPR002347),3-oxoacyl-(acyl-carrier-protein) reductase (IPR011284),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);NIAS_FLcDNA=001-102-D04 (truncated);Manual Curation=June 30%2C 2020;Literature_PMID=32595674;Oryzabase=20533;TENOR=Os04t0376300-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=chloroplast (GO:0009507)
Chr04	irgsp1_rep	five_prime_UTR	18387638	18387888	.	-	.	Parent=Os04t0376300-01
Chr04	irgsp1_rep	CDS	18387478	18387637	.	-	0	Parent=Os04t0376300-01
Chr04	irgsp1_rep	CDS	18385642	18385784	.	-	2	Parent=Os04t0376300-01
Chr04	irgsp1_rep	CDS	18385297	18385350	.	-	0	Parent=Os04t0376300-01
Chr04	irgsp1_rep	CDS	18384472	18384552	.	-	0	Parent=Os04t0376300-01
Chr04	irgsp1_rep	CDS	18384327	18384372	.	-	0	Parent=Os04t0376300-01
Chr04	irgsp1_rep	CDS	18384135	18384229	.	-	2	Parent=Os04t0376300-01
Chr04	irgsp1_rep	CDS	18384023	18384055	.	-	0	Parent=Os04t0376300-01
Chr04	irgsp1_rep	CDS	18383579	18383713	.	-	0	Parent=Os04t0376300-01
Chr04	irgsp1_rep	CDS	18383402	18383495	.	-	0	Parent=Os04t0376300-01
Chr04	irgsp1_rep	CDS	18383092	18383174	.	-	2	Parent=Os04t0376300-01
Chr04	irgsp1_rep	CDS	18382975	18383007	.	-	0	Parent=Os04t0376300-01
Chr04	irgsp1_rep	three_prime_UTR	18382740	18382974	.	-	.	Parent=Os04t0376300-01
Chr04	irgsp1_rep	mRNA	18392642	18394466	.	-	.	ID=Os04t0376400-01;Name=Os04t0376400-01;Locus_id=Os04g0376400;Note=Glycoside hydrolase%2C family 18%2C catalytic domain domain containing protein.;Transcript_evidence=AK287744 (DDBJ%2C Best hit);ORF_evidence=NP_001052581.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: chitin catabolic process (GO:0006032),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: chitinase activity (GO:0004568),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 18%2C catalytic domain (IPR001223),Chitinase II (IPR011583),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J065149N20;TENOR=Os04t0376400-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	18394333	18394466	.	-	.	Parent=Os04t0376400-01
Chr04	irgsp1_rep	CDS	18393138	18394332	.	-	0	Parent=Os04t0376400-01
Chr04	irgsp1_rep	CDS	18392809	18393053	.	-	2	Parent=Os04t0376400-01
Chr04	irgsp1_rep	three_prime_UTR	18392642	18392808	.	-	.	Parent=Os04t0376400-01
Chr04	irgsp1_rep	mRNA	18401260	18405688	.	-	.	ID=Os04t0376500-01;Name=Os04t0376500-01;Locus_id=Os04g0376500;CGSNL Gene Symbol=EIF3H;CGSNL Gene Name=EUKARYOTIC INITIATION FACTOR 3H;Oryzabase Gene Symbol Synonym(s)=eIF-3h%2C OseIF3h;Oryzabase Gene Name Synonym(s)="eukaryotic translation initiation factor 3%2C subunit h"%2C Eukaryotic translation initiation factor 3 subunit h;Note=Similar to Eukaryotic translation initiation factor 3 subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h).;Transcript_evidence=AK103713 (DDBJ%2C Best hit);ORF_evidence=B6SHE0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Mov34/MPN/PAD-1 (IPR000555);NIAS_FLcDNA=J033137H02;Oryzabase=14361;Expression=AK103713;TENOR=Os04t0376500-01;KEGG=Os04t0376500-01
Chr04	irgsp1_rep	five_prime_UTR	18405606	18405688	.	-	.	Parent=Os04t0376500-01
Chr04	irgsp1_rep	CDS	18405596	18405605	.	-	0	Parent=Os04t0376500-01
Chr04	irgsp1_rep	CDS	18405371	18405480	.	-	2	Parent=Os04t0376500-01
Chr04	irgsp1_rep	CDS	18404510	18404626	.	-	0	Parent=Os04t0376500-01
Chr04	irgsp1_rep	CDS	18404304	18404407	.	-	0	Parent=Os04t0376500-01
Chr04	irgsp1_rep	CDS	18403321	18403387	.	-	1	Parent=Os04t0376500-01
Chr04	irgsp1_rep	CDS	18402804	18402937	.	-	0	Parent=Os04t0376500-01
Chr04	irgsp1_rep	CDS	18402676	18402724	.	-	1	Parent=Os04t0376500-01
Chr04	irgsp1_rep	CDS	18402528	18402599	.	-	0	Parent=Os04t0376500-01
Chr04	irgsp1_rep	CDS	18402332	18402433	.	-	0	Parent=Os04t0376500-01
Chr04	irgsp1_rep	CDS	18402173	18402240	.	-	0	Parent=Os04t0376500-01
Chr04	irgsp1_rep	CDS	18401853	18402005	.	-	1	Parent=Os04t0376500-01
Chr04	irgsp1_rep	CDS	18401421	18401478	.	-	1	Parent=Os04t0376500-01
Chr04	irgsp1_rep	three_prime_UTR	18401260	18401420	.	-	.	Parent=Os04t0376500-01
Chr04	irgsp1_rep	mRNA	18401258	18405441	.	-	.	ID=Os04t0376500-02;Name=Os04t0376500-02;Locus_id=Os04g0376500;CGSNL Gene Symbol=EIF3H;CGSNL Gene Name=EUKARYOTIC INITIATION FACTOR 3H;Oryzabase Gene Symbol Synonym(s)=eIF-3h%2C OseIF3h;Oryzabase Gene Name Synonym(s)="eukaryotic translation initiation factor 3%2C subunit h"%2C Eukaryotic translation initiation factor 3 subunit h;Note=Similar to eukaryotic translation initiation factor 3 subunit 3.;Transcript_evidence=AK061349 (DDBJ%2C Best hit);ORF_evidence=B6SHE0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Mov34/MPN/PAD-1 (IPR000555);NIAS_FLcDNA=006-303-F07;Oryzabase=14361;Expression=AK061349;TENOR=Os04t0376500-02;KEGG=Os04t0376500-02
Chr04	irgsp1_rep	five_prime_UTR	18405440	18405441	.	-	.	Parent=Os04t0376500-02
Chr04	irgsp1_rep	CDS	18405371	18405439	.	-	0	Parent=Os04t0376500-02
Chr04	irgsp1_rep	CDS	18404510	18404626	.	-	0	Parent=Os04t0376500-02
Chr04	irgsp1_rep	CDS	18404304	18404407	.	-	0	Parent=Os04t0376500-02
Chr04	irgsp1_rep	CDS	18403321	18403387	.	-	1	Parent=Os04t0376500-02
Chr04	irgsp1_rep	CDS	18402804	18402937	.	-	0	Parent=Os04t0376500-02
Chr04	irgsp1_rep	CDS	18402676	18402724	.	-	1	Parent=Os04t0376500-02
Chr04	irgsp1_rep	CDS	18402528	18402599	.	-	0	Parent=Os04t0376500-02
Chr04	irgsp1_rep	CDS	18402332	18402433	.	-	0	Parent=Os04t0376500-02
Chr04	irgsp1_rep	CDS	18402173	18402240	.	-	0	Parent=Os04t0376500-02
Chr04	irgsp1_rep	CDS	18401853	18402005	.	-	1	Parent=Os04t0376500-02
Chr04	irgsp1_rep	CDS	18401421	18401478	.	-	1	Parent=Os04t0376500-02
Chr04	irgsp1_rep	three_prime_UTR	18401258	18401420	.	-	.	Parent=Os04t0376500-02
Chr04	irgsp1_rep	mRNA	18407325	18410401	.	-	.	ID=Os04t0376600-01;Name=Os04t0376600-01;Locus_id=Os04g0376600;Note=Similar to ER lumen protein retaining receptor.;Transcript_evidence=AK101788 (DDBJ%2C Best hit);ORF_evidence=B9FES2 (UniProt);NIAS_FLcDNA=J033065H17;TENOR=Os04t0376600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	18410160	18410401	.	-	.	Parent=Os04t0376600-01
Chr04	irgsp1_rep	CDS	18410098	18410159	.	-	0	Parent=Os04t0376600-01
Chr04	irgsp1_rep	CDS	18409342	18409394	.	-	1	Parent=Os04t0376600-01
Chr04	irgsp1_rep	CDS	18409128	18409238	.	-	2	Parent=Os04t0376600-01
Chr04	irgsp1_rep	CDS	18408910	18409046	.	-	2	Parent=Os04t0376600-01
Chr04	irgsp1_rep	CDS	18408675	18408821	.	-	0	Parent=Os04t0376600-01
Chr04	irgsp1_rep	three_prime_UTR	18408412	18408674	.	-	.	Parent=Os04t0376600-01
Chr04	irgsp1_rep	three_prime_UTR	18408036	18408116	.	-	.	Parent=Os04t0376600-01
Chr04	irgsp1_rep	three_prime_UTR	18407325	18407942	.	-	.	Parent=Os04t0376600-01
Chr04	irgsp1_rep	mRNA	18414082	18417621	.	-	.	ID=Os04t0376700-00;Name=Os04t0376700-00;Locus_id=Os04g0376700;Note=Similar to ER lumen protein retaining receptor (HDEL receptor) (PGP169-12).;Transcript_evidence=FP091864 (DDBJ);ORF_evidence=A2XSJ0 (UniProt);GO=Biological Process: protein retention in ER lumen (GO:0006621),Cellular Component: integral to membrane (GO:0016021),Molecular Function: ER retention sequence binding (GO:0046923);InterPro=ER lumen protein retaining receptor (IPR000133);TENOR=Os04t0376700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	18417583	18417621	.	-	.	Parent=Os04t0376700-00
Chr04	irgsp1_rep	CDS	18417492	18417582	.	-	0	Parent=Os04t0376700-00
Chr04	irgsp1_rep	CDS	18415911	18416176	.	-	2	Parent=Os04t0376700-00
Chr04	irgsp1_rep	CDS	18415642	18415757	.	-	0	Parent=Os04t0376700-00
Chr04	irgsp1_rep	CDS	18414629	18414702	.	-	1	Parent=Os04t0376700-00
Chr04	irgsp1_rep	CDS	18414472	18414535	.	-	2	Parent=Os04t0376700-00
Chr04	irgsp1_rep	CDS	18414322	18414358	.	-	1	Parent=Os04t0376700-00
Chr04	irgsp1_rep	three_prime_UTR	18414082	18414321	.	-	.	Parent=Os04t0376700-00
Chr04	irgsp1_rep	mRNA	18443377	18443657	.	-	.	ID=Os04t0377500-00;Name=Os04t0377500-00;Locus_id=Os04g0377500;Note=Non-protein coding transcript.;Transcript_evidence=CT834365 (DDBJ%2C Secondary hit);ORF_evidence=NONE;TENOR=Os04t0377500-00
Chr04	irgsp1_rep	exon	18443377	18443657	.	-	.	Parent=Os04t0377500-00
Chr04	irgsp1_rep	mRNA	18452770	18456567	.	+	.	ID=Os04t0377600-01;Name=Os04t0377600-01;Locus_id=Os04g0377600;Note=Similar to OSIGBa0135C09.4 protein.;Transcript_evidence=AK109611 (DDBJ%2C Best hit);ORF_evidence=A0B9X8 (UniProt);NIAS_FLcDNA=002-137-G05;TENOR=Os04t0377600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	18452770	18453153	.	+	0	Parent=Os04t0377600-01
Chr04	irgsp1_rep	CDS	18453255	18453347	.	+	0	Parent=Os04t0377600-01
Chr04	irgsp1_rep	CDS	18454327	18454359	.	+	0	Parent=Os04t0377600-01
Chr04	irgsp1_rep	three_prime_UTR	18454360	18454438	.	+	.	Parent=Os04t0377600-01
Chr04	irgsp1_rep	three_prime_UTR	18454723	18454875	.	+	.	Parent=Os04t0377600-01
Chr04	irgsp1_rep	three_prime_UTR	18455087	18455185	.	+	.	Parent=Os04t0377600-01
Chr04	irgsp1_rep	three_prime_UTR	18455274	18455402	.	+	.	Parent=Os04t0377600-01
Chr04	irgsp1_rep	three_prime_UTR	18455818	18455997	.	+	.	Parent=Os04t0377600-01
Chr04	irgsp1_rep	three_prime_UTR	18456078	18456194	.	+	.	Parent=Os04t0377600-01
Chr04	irgsp1_rep	three_prime_UTR	18456276	18456567	.	+	.	Parent=Os04t0377600-01
Chr04	irgsp1_rep	mRNA	18458075	18458875	.	-	.	ID=Os04t0377932-00;Name=Os04t0377932-00;Locus_id=Os04g0377932;CGSNL Gene Symbol=MSL19;CGSNL Gene Name=MYB/SANT-LIKE 19;Oryzabase Gene Symbol Synonym(s)=OsMSL19;Oryzabase Gene Name Synonym(s)=Myb/SANT-LIKE 19;Note=Similar to Gonidia forming protein GlsA.;Transcript_evidence=ab initio prediction;ORF_evidence=B9A121 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Myb%2C DNA-binding (IPR014778),MYB-like (IPR017877);Oryzabase=22959;TENOR=Os04t0377932-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	18458075	18458875	.	-	0	Parent=Os04t0377932-00
Chr04	irgsp1_rep	mRNA	18468382	18473541	.	-	.	ID=Os04t0378066-00;Name=Os04t0378066-00;Locus_id=Os04g0378066;Note=Hypothetical gene.;Transcript_evidence=BT017523 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0378066-00;KEGG=Os04t0378066-00
Chr04	irgsp1_rep	five_prime_UTR	18473541	18473541	.	-	.	Parent=Os04t0378066-00
Chr04	irgsp1_rep	CDS	18473283	18473540	.	-	0	Parent=Os04t0378066-00
Chr04	irgsp1_rep	three_prime_UTR	18472613	18472733	.	-	.	Parent=Os04t0378066-00
Chr04	irgsp1_rep	three_prime_UTR	18469717	18469975	.	-	.	Parent=Os04t0378066-00
Chr04	irgsp1_rep	three_prime_UTR	18469562	18469614	.	-	.	Parent=Os04t0378066-00
Chr04	irgsp1_rep	three_prime_UTR	18468382	18468526	.	-	.	Parent=Os04t0378066-00
Chr04	irgsp1_rep	mRNA	18468243	18473626	.	+	.	ID=Os04t0378200-01;Name=Os04t0378200-01;Locus_id=Os04g0378200;Note=Sterile alpha motif SAM domain containing protein.;Transcript_evidence=AK103076 (DDBJ%2C Best hit);ORF_evidence=A0B9Y0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Sterile alpha motif domain (IPR001660),Sterile alpha motif/pointed domain (IPR013761),Sterile alpha motif%2C type 1 (IPR021129);NIAS_FLcDNA=J033118E02;Expression=AK103076;TENOR=Os04t0378200-01;KEGG=Os04t0378200-01
Chr04	irgsp1_rep	five_prime_UTR	18468243	18468383	.	+	.	Parent=Os04t0378200-01
Chr04	irgsp1_rep	CDS	18468384	18468511	.	+	0	Parent=Os04t0378200-01
Chr04	irgsp1_rep	CDS	18469550	18469614	.	+	1	Parent=Os04t0378200-01
Chr04	irgsp1_rep	CDS	18469708	18469979	.	+	2	Parent=Os04t0378200-01
Chr04	irgsp1_rep	CDS	18472617	18472691	.	+	0	Parent=Os04t0378200-01
Chr04	irgsp1_rep	CDS	18472773	18472835	.	+	0	Parent=Os04t0378200-01
Chr04	irgsp1_rep	CDS	18473304	18473348	.	+	0	Parent=Os04t0378200-01
Chr04	irgsp1_rep	three_prime_UTR	18473349	18473626	.	+	.	Parent=Os04t0378200-01
Chr04	irgsp1_rep	mRNA	18478742	18480215	.	-	.	ID=Os04t0378400-01;Name=Os04t0378400-01;Locus_id=Os04g0378400;Note=Non-protein coding transcript.;Transcript_evidence=AK064444 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-110-E09;TENOR=Os04t0378400-01
Chr04	irgsp1_rep	exon	18478742	18480215	.	-	.	Parent=Os04t0378400-01
Chr04	irgsp1_rep	mRNA	18490353	18494159	.	+	.	ID=Os04t0378575-00;Name=Os04t0378575-00;Locus_id=Os04g0378575;Note=Similar to NBS-LRR protein (Fragment).;Transcript_evidence=EF515836 (DDBJ);ORF_evidence=Q8LKA0 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os04t0378575-00
Chr04	irgsp1_rep	CDS	18490353	18494159	.	+	0	Parent=Os04t0378575-00
Chr04	irgsp1_rep	mRNA	18520424	18530597	.	+	.	ID=Os04t0379300-01;Name=Os04t0379300-01;Locus_id=Os04g0379300;Note=Methyltransferase type 11 domain containing protein.;Transcript_evidence=AK065694 (DDBJ%2C Best hit);ORF_evidence=NP_850171.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Methyltransferase type 11 (IPR013216);NIAS_FLcDNA=J013035D10;Expression=AK065694;TENOR=Os04t0379300-01;KEGG=Os04t0379300-01
Chr04	irgsp1_rep	five_prime_UTR	18520424	18520523	.	+	.	Parent=Os04t0379300-01
Chr04	irgsp1_rep	CDS	18520524	18520925	.	+	0	Parent=Os04t0379300-01
Chr04	irgsp1_rep	CDS	18521694	18521795	.	+	0	Parent=Os04t0379300-01
Chr04	irgsp1_rep	CDS	18521987	18522053	.	+	0	Parent=Os04t0379300-01
Chr04	irgsp1_rep	CDS	18522635	18522813	.	+	2	Parent=Os04t0379300-01
Chr04	irgsp1_rep	CDS	18522897	18523157	.	+	0	Parent=Os04t0379300-01
Chr04	irgsp1_rep	CDS	18524429	18524512	.	+	0	Parent=Os04t0379300-01
Chr04	irgsp1_rep	CDS	18524622	18524669	.	+	0	Parent=Os04t0379300-01
Chr04	irgsp1_rep	CDS	18524759	18524823	.	+	0	Parent=Os04t0379300-01
Chr04	irgsp1_rep	CDS	18525954	18526002	.	+	1	Parent=Os04t0379300-01
Chr04	irgsp1_rep	CDS	18527237	18527477	.	+	0	Parent=Os04t0379300-01
Chr04	irgsp1_rep	CDS	18528728	18528849	.	+	2	Parent=Os04t0379300-01
Chr04	irgsp1_rep	CDS	18529047	18529127	.	+	0	Parent=Os04t0379300-01
Chr04	irgsp1_rep	CDS	18529199	18529273	.	+	0	Parent=Os04t0379300-01
Chr04	irgsp1_rep	CDS	18529513	18529655	.	+	0	Parent=Os04t0379300-01
Chr04	irgsp1_rep	CDS	18529767	18529917	.	+	1	Parent=Os04t0379300-01
Chr04	irgsp1_rep	CDS	18530020	18530202	.	+	0	Parent=Os04t0379300-01
Chr04	irgsp1_rep	three_prime_UTR	18530203	18530597	.	+	.	Parent=Os04t0379300-01
Chr04	irgsp1_rep	mRNA	18523011	18530442	.	+	.	ID=Os04t0379300-02;Name=Os04t0379300-02;Locus_id=Os04g0379300;Note=Similar to predicted protein.;Transcript_evidence=AK059313 (DDBJ%2C Best hit);ORF_evidence=NP_850171.1 (RefSeq);NIAS_FLcDNA=001-025-G11;Expression=AK059313;TENOR=Os04t0379300-02;KEGG=Os04t0379300-02
Chr04	irgsp1_rep	CDS	18523011	18523157	.	+	0	Parent=Os04t0379300-02
Chr04	irgsp1_rep	CDS	18524429	18524512	.	+	0	Parent=Os04t0379300-02
Chr04	irgsp1_rep	CDS	18524622	18524669	.	+	0	Parent=Os04t0379300-02
Chr04	irgsp1_rep	CDS	18524759	18524823	.	+	0	Parent=Os04t0379300-02
Chr04	irgsp1_rep	CDS	18525954	18526002	.	+	1	Parent=Os04t0379300-02
Chr04	irgsp1_rep	CDS	18527237	18527477	.	+	0	Parent=Os04t0379300-02
Chr04	irgsp1_rep	CDS	18528728	18528849	.	+	2	Parent=Os04t0379300-02
Chr04	irgsp1_rep	CDS	18529047	18529127	.	+	0	Parent=Os04t0379300-02
Chr04	irgsp1_rep	CDS	18529199	18529273	.	+	0	Parent=Os04t0379300-02
Chr04	irgsp1_rep	CDS	18529513	18529655	.	+	0	Parent=Os04t0379300-02
Chr04	irgsp1_rep	CDS	18529767	18529917	.	+	1	Parent=Os04t0379300-02
Chr04	irgsp1_rep	CDS	18530020	18530202	.	+	0	Parent=Os04t0379300-02
Chr04	irgsp1_rep	three_prime_UTR	18530203	18530442	.	+	.	Parent=Os04t0379300-02
Chr04	irgsp1_rep	mRNA	18535168	18538577	.	-	.	ID=Os04t0379400-01;Name=Os04t0379400-01;Locus_id=Os04g0379400;Note=Similar to Nuclear pore complex component (sc Seh1) (ISS).;Transcript_evidence=AK065013 (DDBJ%2C Best hit),AK104861 (DDBJ%2C Best hit);ORF_evidence=XP_003077919.1 (RefSeq);InterPro=Uncharacterised protein family Ycf49 (IPR019634);NIAS_FLcDNA=J013001F06,001-043-E04;Expression=AK065013;TENOR=Os04t0379400-01;KEGG=Os04t0379400-01
Chr04	irgsp1_rep	five_prime_UTR	18538394	18538577	.	-	.	Parent=Os04t0379400-01
Chr04	irgsp1_rep	five_prime_UTR	18537330	18537347	.	-	.	Parent=Os04t0379400-01
Chr04	irgsp1_rep	CDS	18537094	18537329	.	-	0	Parent=Os04t0379400-01
Chr04	irgsp1_rep	CDS	18536927	18537005	.	-	1	Parent=Os04t0379400-01
Chr04	irgsp1_rep	CDS	18535947	18536015	.	-	0	Parent=Os04t0379400-01
Chr04	irgsp1_rep	CDS	18535474	18535581	.	-	0	Parent=Os04t0379400-01
Chr04	irgsp1_rep	three_prime_UTR	18535472	18535473	.	-	.	Parent=Os04t0379400-01
Chr04	irgsp1_rep	three_prime_UTR	18535168	18535377	.	-	.	Parent=Os04t0379400-01
Chr04	irgsp1_rep	mRNA	18538781	18542841	.	+	.	ID=Os04t0379500-01;Name=Os04t0379500-01;Locus_id=Os04g0379500;Note=Conserved hypothetical protein.;Transcript_evidence=AK066817 (DDBJ%2C Best hit);ORF_evidence=Q7X8A4 (UniProt);NIAS_FLcDNA=J013081A11;TENOR=Os04t0379500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	18538781	18538782	.	+	.	Parent=Os04t0379500-01
Chr04	irgsp1_rep	CDS	18538783	18539466	.	+	0	Parent=Os04t0379500-01
Chr04	irgsp1_rep	three_prime_UTR	18539467	18539917	.	+	.	Parent=Os04t0379500-01
Chr04	irgsp1_rep	three_prime_UTR	18540098	18540213	.	+	.	Parent=Os04t0379500-01
Chr04	irgsp1_rep	three_prime_UTR	18541215	18542068	.	+	.	Parent=Os04t0379500-01
Chr04	irgsp1_rep	three_prime_UTR	18542186	18542235	.	+	.	Parent=Os04t0379500-01
Chr04	irgsp1_rep	three_prime_UTR	18542505	18542841	.	+	.	Parent=Os04t0379500-01
Chr04	irgsp1_rep	mRNA	18542746	18542943	.	+	.	ID=Os04t0379500-02;Name=Os04t0379500-02;Locus_id=Os04g0379500;Note=Non-protein coding transcript.;Transcript_evidence=AK121103 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023069O13;TENOR=Os04t0379500-02
Chr04	irgsp1_rep	exon	18542746	18542943	.	+	.	Parent=Os04t0379500-02
Chr04	irgsp1_rep	mRNA	18547278	18550971	.	+	.	ID=Os04t0379600-01;Name=Os04t0379600-01;Locus_id=Os04g0379600;Note=Defence response%2C Rin4 domain containing protein.;Transcript_evidence=AK101106 (DDBJ%2C Best hit);ORF_evidence=B4FE44 (UniProt);InterPro=Pathogenic type III effector avirulence factor Avr cleavage site (IPR008700);NIAS_FLcDNA=J033025D17;Expression=AK101106;TENOR=Os04t0379600-01;KEGG=Os04t0379600-01
Chr04	irgsp1_rep	five_prime_UTR	18547278	18548177	.	+	.	Parent=Os04t0379600-01
Chr04	irgsp1_rep	CDS	18548178	18548183	.	+	0	Parent=Os04t0379600-01
Chr04	irgsp1_rep	CDS	18549201	18549674	.	+	0	Parent=Os04t0379600-01
Chr04	irgsp1_rep	CDS	18549771	18549941	.	+	0	Parent=Os04t0379600-01
Chr04	irgsp1_rep	CDS	18550676	18550699	.	+	0	Parent=Os04t0379600-01
Chr04	irgsp1_rep	three_prime_UTR	18550700	18550971	.	+	.	Parent=Os04t0379600-01
Chr04	irgsp1_rep	mRNA	18551379	18552402	.	-	.	ID=Os04t0379700-01;Name=Os04t0379700-01;Locus_id=Os04g0379700;Oryzabase Gene Symbol Synonym(s)=RVDE1;Note=Similar to Violaxanthin de-epoxidase.;Transcript_evidence=AK061554 (DDBJ%2C Best hit);ORF_evidence=Q9FUS5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: chloroplast (GO:0009507),Molecular Function: binding (GO:0005488),Molecular Function: violaxanthin de-epoxidase activity (GO:0046422);InterPro=Violaxanthin de-epoxidase (IPR010788),Calycin-like (IPR011038),Calycin (IPR012674);NIAS_FLcDNA=006-311-B12;Oryzabase=20214;Expression=AK061554;TENOR=Os04t0379700-01;KEGG=Os04t0379700-01 (EC:1.10.99.3)
Chr04	irgsp1_rep	CDS	18552185	18552402	.	-	0	Parent=Os04t0379700-01
Chr04	irgsp1_rep	CDS	18551602	18552115	.	-	1	Parent=Os04t0379700-01
Chr04	irgsp1_rep	three_prime_UTR	18551379	18551601	.	-	.	Parent=Os04t0379700-01
Chr04	irgsp1_rep	mRNA	18554460	18559331	.	+	.	ID=Os04t0379800-01;Name=Os04t0379800-01;Locus_id=Os04g0379800;Note=Conserved hypothetical protein.;Transcript_evidence=AK064080 (DDBJ%2C Best hit);ORF_evidence=A2XSL0 (UniProt);NIAS_FLcDNA=002-100-B02;Expression=AK064080;TENOR=Os04t0379800-01;KEGG=Os04t0379800-01
Chr04	irgsp1_rep	five_prime_UTR	18554460	18554530	.	+	.	Parent=Os04t0379800-01
Chr04	irgsp1_rep	CDS	18554531	18554592	.	+	0	Parent=Os04t0379800-01
Chr04	irgsp1_rep	CDS	18554696	18554801	.	+	1	Parent=Os04t0379800-01
Chr04	irgsp1_rep	CDS	18554961	18555027	.	+	0	Parent=Os04t0379800-01
Chr04	irgsp1_rep	CDS	18555154	18555255	.	+	2	Parent=Os04t0379800-01
Chr04	irgsp1_rep	CDS	18555355	18555419	.	+	2	Parent=Os04t0379800-01
Chr04	irgsp1_rep	CDS	18555822	18555920	.	+	0	Parent=Os04t0379800-01
Chr04	irgsp1_rep	CDS	18556356	18556423	.	+	0	Parent=Os04t0379800-01
Chr04	irgsp1_rep	CDS	18557369	18557582	.	+	1	Parent=Os04t0379800-01
Chr04	irgsp1_rep	CDS	18558034	18558089	.	+	0	Parent=Os04t0379800-01
Chr04	irgsp1_rep	CDS	18558318	18558425	.	+	1	Parent=Os04t0379800-01
Chr04	irgsp1_rep	CDS	18558667	18558850	.	+	1	Parent=Os04t0379800-01
Chr04	irgsp1_rep	CDS	18559019	18559114	.	+	0	Parent=Os04t0379800-01
Chr04	irgsp1_rep	three_prime_UTR	18559115	18559331	.	+	.	Parent=Os04t0379800-01
Chr04	irgsp1_rep	mRNA	18560190	18564376	.	-	.	ID=Os04t0379900-01;Name=Os04t0379900-01;Locus_id=Os04g0379900;Oryzabase Gene Name Synonym(s)=stearoyl-acyl carrier protein desaturase%2C Stearoyl-ACP desaturase%2C stearyl-ACP desaturase;Note=Similar to Acyl-[acyl-carrier-protein] desaturase%2C chloroplast precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase).;Transcript_evidence=AK065340 (DDBJ%2C Best hit);ORF_evidence=A2XSL4 (UniProt);GO=Biological Process: fatty acid metabolic process (GO:0006631),Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: acyl-[acyl-carrier-protein] desaturase activity (GO:0045300),Molecular Function: transition metal ion binding (GO:0046914);InterPro=Fatty acid desaturase%2C type 2 (IPR005067),Stearoyl-ACP desaturase%2C conserved site (IPR005803),Ferritin/ribonucleotide reductase-like (IPR009078),Ribonucleotide reductase-related (IPR012348);NIAS_FLcDNA=J013000O12;Oryzabase=13753;Expression=AK065340;TENOR=Os04t0379900-01;KEGG=Os04t0379900-01 (EC:1.14.19.2)
Chr04	irgsp1_rep	five_prime_UTR	18564283	18564376	.	-	.	Parent=Os04t0379900-01
Chr04	irgsp1_rep	CDS	18564173	18564282	.	-	0	Parent=Os04t0379900-01
Chr04	irgsp1_rep	CDS	18561570	18562071	.	-	1	Parent=Os04t0379900-01
Chr04	irgsp1_rep	CDS	18560600	18561160	.	-	0	Parent=Os04t0379900-01
Chr04	irgsp1_rep	three_prime_UTR	18560190	18560599	.	-	.	Parent=Os04t0379900-01
Chr04	irgsp1_rep	mRNA	18560600	18562029	.	+	.	ID=Os04t0379916-00;Name=Os04t0379916-00;Locus_id=Os04g0379916;Note=Hypothetical protein.;Transcript_evidence=tplb0059g06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0379916-00
Chr04	irgsp1_rep	five_prime_UTR	18560600	18561111	.	+	.	Parent=Os04t0379916-00
Chr04	irgsp1_rep	CDS	18561112	18561149	.	+	0	Parent=Os04t0379916-00
Chr04	irgsp1_rep	CDS	18561563	18561809	.	+	1	Parent=Os04t0379916-00
Chr04	irgsp1_rep	three_prime_UTR	18561810	18562029	.	+	.	Parent=Os04t0379916-00
Chr04	irgsp1_rep	mRNA	18562301	18564160	.	+	.	ID=Os04t0379933-01;Name=Os04t0379933-01;Locus_id=Os04g0379933;Note=Hypothetical conserved gene.;Transcript_evidence=AK289235 (DDBJ%2C Best hit);ORF_evidence=Q7XNQ4 (UniProt);NIAS_FLcDNA=J100074F04;TENOR=Os04t0379933-01;KEGG=Os04t0379933-01
Chr04	irgsp1_rep	five_prime_UTR	18562301	18563713	.	+	.	Parent=Os04t0379933-01
Chr04	irgsp1_rep	CDS	18563714	18564160	.	+	0	Parent=Os04t0379933-01
Chr04	irgsp1_rep	mRNA	18589876	18595952	.	-	.	ID=Os04t0380000-01;Name=Os04t0380000-01;Locus_id=Os04g0380000;Note=Similar to OSIGBa0092E09.6 protein.;Transcript_evidence=AK069457 (DDBJ%2C Best hit);ORF_evidence=Q01LJ2 (UniProt);NIAS_FLcDNA=J023019M11;TENOR=Os04t0380000-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	18595367	18595952	.	-	.	Parent=Os04t0380000-01
Chr04	irgsp1_rep	five_prime_UTR	18594786	18594864	.	-	.	Parent=Os04t0380000-01
Chr04	irgsp1_rep	CDS	18594783	18594785	.	-	0	Parent=Os04t0380000-01
Chr04	irgsp1_rep	CDS	18593909	18594311	.	-	0	Parent=Os04t0380000-01
Chr04	irgsp1_rep	CDS	18591773	18591855	.	-	2	Parent=Os04t0380000-01
Chr04	irgsp1_rep	three_prime_UTR	18591751	18591772	.	-	.	Parent=Os04t0380000-01
Chr04	irgsp1_rep	three_prime_UTR	18591516	18591644	.	-	.	Parent=Os04t0380000-01
Chr04	irgsp1_rep	three_prime_UTR	18590346	18590412	.	-	.	Parent=Os04t0380000-01
Chr04	irgsp1_rep	three_prime_UTR	18589876	18590011	.	-	.	Parent=Os04t0380000-01
Chr04	irgsp1_rep	mRNA	18589059	18595952	.	-	.	ID=Os04t0380000-02;Name=Os04t0380000-02;Locus_id=Os04g0380000;Note=Conserved hypothetical protein.;Transcript_evidence=AK103261 (DDBJ%2C Best hit);ORF_evidence=Q7XNQ2 (UniProt);NIAS_FLcDNA=J033124D08;TENOR=Os04t0380000-02;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	18595367	18595952	.	-	.	Parent=Os04t0380000-02
Chr04	irgsp1_rep	five_prime_UTR	18594786	18594864	.	-	.	Parent=Os04t0380000-02
Chr04	irgsp1_rep	CDS	18594783	18594785	.	-	0	Parent=Os04t0380000-02
Chr04	irgsp1_rep	CDS	18593909	18594311	.	-	0	Parent=Os04t0380000-02
Chr04	irgsp1_rep	CDS	18591773	18591855	.	-	2	Parent=Os04t0380000-02
Chr04	irgsp1_rep	three_prime_UTR	18591751	18591772	.	-	.	Parent=Os04t0380000-02
Chr04	irgsp1_rep	three_prime_UTR	18591516	18591644	.	-	.	Parent=Os04t0380000-02
Chr04	irgsp1_rep	three_prime_UTR	18590346	18590412	.	-	.	Parent=Os04t0380000-02
Chr04	irgsp1_rep	three_prime_UTR	18589874	18590011	.	-	.	Parent=Os04t0380000-02
Chr04	irgsp1_rep	three_prime_UTR	18589059	18589714	.	-	.	Parent=Os04t0380000-02
Chr04	irgsp1_rep	mRNA	18598867	18601397	.	+	.	ID=Os04t0380200-01;Name=Os04t0380200-01;Locus_id=Os04g0380200;Note=Conserved hypothetical protein.;Transcript_evidence=AK067334 (DDBJ%2C Best hit);ORF_evidence=Q7XNQ0 (UniProt);NIAS_FLcDNA=J013102N12;Expression=AK067334;TENOR=Os04t0380200-01;KEGG=Os04t0380200-01
Chr04	irgsp1_rep	five_prime_UTR	18598867	18598877	.	+	.	Parent=Os04t0380200-01
Chr04	irgsp1_rep	CDS	18598878	18599322	.	+	0	Parent=Os04t0380200-01
Chr04	irgsp1_rep	CDS	18600656	18600736	.	+	2	Parent=Os04t0380200-01
Chr04	irgsp1_rep	CDS	18600849	18601186	.	+	2	Parent=Os04t0380200-01
Chr04	irgsp1_rep	three_prime_UTR	18601187	18601397	.	+	.	Parent=Os04t0380200-01
Chr04	irgsp1_rep	mRNA	18598963	18601426	.	+	.	ID=Os04t0380200-02;Name=Os04t0380200-02;Locus_id=Os04g0380200;Note=Hypothetical conserved gene.;Transcript_evidence=AK104271 (DDBJ%2C Best hit),AK104769 (DDBJ%2C Best hit);ORF_evidence=Q7XNQ0 (UniProt);NIAS_FLcDNA=006-311-F10,001-039-A04;Expression=AK104271;TENOR=Os04t0380200-02;KEGG=Os04t0380200-02
Chr04	irgsp1_rep	five_prime_UTR	18598963	18599162	.	+	.	Parent=Os04t0380200-02
Chr04	irgsp1_rep	CDS	18599163	18599322	.	+	0	Parent=Os04t0380200-02
Chr04	irgsp1_rep	CDS	18600656	18600736	.	+	2	Parent=Os04t0380200-02
Chr04	irgsp1_rep	CDS	18600849	18601186	.	+	2	Parent=Os04t0380200-02
Chr04	irgsp1_rep	three_prime_UTR	18601187	18601426	.	+	.	Parent=Os04t0380200-02
Chr04	irgsp1_rep	mRNA	18602681	18609094	.	-	.	ID=Os04t0380300-01;Name=Os04t0380300-01;Locus_id=Os04g0380300;Oryzabase Gene Symbol Synonym(s)=OsFbox203%2C Os_F0600;Oryzabase Gene Name Synonym(s)=F-box protein 203;Note=Kelch-type beta propeller domain containing protein.;Transcript_evidence=AK120132 (DDBJ%2C Best hit);ORF_evidence=XP_002311715.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Kelch repeat type 1 (IPR006652),Galactose oxidase%2C beta-propeller (IPR015916);NIAS_FLcDNA=J013027B10;Oryzabase=16992;TENOR=Os04t0380300-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	18608980	18609094	.	-	.	Parent=Os04t0380300-01
Chr04	irgsp1_rep	five_prime_UTR	18606291	18606384	.	-	.	Parent=Os04t0380300-01
Chr04	irgsp1_rep	five_prime_UTR	18604371	18604848	.	-	.	Parent=Os04t0380300-01
Chr04	irgsp1_rep	CDS	18603871	18604370	.	-	0	Parent=Os04t0380300-01
Chr04	irgsp1_rep	CDS	18603006	18603633	.	-	1	Parent=Os04t0380300-01
Chr04	irgsp1_rep	three_prime_UTR	18602681	18603005	.	-	.	Parent=Os04t0380300-01
Chr04	irgsp1_rep	mRNA	18607749	18609090	.	-	.	ID=Os04t0380300-02;Name=Os04t0380300-02;Locus_id=Os04g0380300;Oryzabase Gene Symbol Synonym(s)=OsFbox203%2C Os_F0600;Oryzabase Gene Name Synonym(s)=F-box protein 203;Note=Non-protein coding transcript.;Transcript_evidence=AK066512 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013068C19;Oryzabase=16992;TENOR=Os04t0380300-02
Chr04	irgsp1_rep	exon	18607749	18609090	.	-	.	Parent=Os04t0380300-02
Chr04	irgsp1_rep	mRNA	18603004	18604704	.	+	.	ID=Os04t0380400-00;Name=Os04t0380400-00;Locus_id=Os04g0380400;Note=Non-protein coding transcript.;Transcript_evidence=tplb0024b14 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os04t0380400-00
Chr04	irgsp1_rep	exon	18603004	18603637	.	+	.	Parent=Os04t0380400-00
Chr04	irgsp1_rep	exon	18603879	18604704	.	+	.	Parent=Os04t0380400-00
Chr04	irgsp1_rep	mRNA	18617211	18619467	.	+	.	ID=Os04t0380500-01;Name=Os04t0380500-01;Locus_id=Os04g0380500;Note=Similar to OSIGBa0075F02.5 protein.;Transcript_evidence=AK064131 (DDBJ%2C Best hit);ORF_evidence=Q01LF4 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=002-102-F10;Expression=AK064131;TENOR=Os04t0380500-01;KEGG=Os04t0380500-01
Chr04	irgsp1_rep	CDS	18617211	18618450	.	+	0	Parent=Os04t0380500-01
Chr04	irgsp1_rep	CDS	18618660	18618763	.	+	2	Parent=Os04t0380500-01
Chr04	irgsp1_rep	three_prime_UTR	18618764	18619467	.	+	.	Parent=Os04t0380500-01
Chr04	irgsp1_rep	mRNA	18637317	18643324	.	-	.	ID=Os04t0380800-01;Name=Os04t0380800-01;Locus_id=Os04g0380800;Note=Hypothetical conserved gene.;Transcript_evidence=AK241890 (DDBJ%2C Best hit);ORF_evidence=B9FET8 (UniProt);NIAS_FLcDNA=J075004H10;TENOR=Os04t0380800-01;KEGG=Os04t0380800-01
Chr04	irgsp1_rep	five_prime_UTR	18643284	18643324	.	-	.	Parent=Os04t0380800-01
Chr04	irgsp1_rep	CDS	18642951	18643283	.	-	0	Parent=Os04t0380800-01
Chr04	irgsp1_rep	CDS	18638197	18638316	.	-	0	Parent=Os04t0380800-01
Chr04	irgsp1_rep	CDS	18637926	18637956	.	-	0	Parent=Os04t0380800-01
Chr04	irgsp1_rep	CDS	18637606	18637724	.	-	2	Parent=Os04t0380800-01
Chr04	irgsp1_rep	three_prime_UTR	18637317	18637605	.	-	.	Parent=Os04t0380800-01
Chr04	irgsp1_rep	mRNA	18659540	18669900	.	-	.	ID=Os04t0381000-01;Name=Os04t0381000-01;Locus_id=Os04g0381000;Oryzabase Gene Symbol Synonym(s)=OsDRP3B%2C DRP3B;Oryzabase Gene Name Synonym(s)=dynamin-related protein 3B;Note=Similar to DRP3A (DYNAMIN-RELATED PROTEIN 3A)%3B GTP binding / GTPase/ phosphoinositide binding.;Transcript_evidence=AK105435 (DDBJ%2C Best hit);ORF_evidence=NP_567931.1 (RefSeq);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Dynamin central domain (IPR000375),Dynamin%2C GTPase domain (IPR001401),Dynamin GTPase effector (IPR003130),GTPase effector domain%2C GED (IPR020850),Dynamin (IPR022812);NIAS_FLcDNA=001-124-F11;Oryzabase=21601;TENOR=Os04t0381000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	18669502	18669900	.	-	0	Parent=Os04t0381000-01
Chr04	irgsp1_rep	CDS	18668553	18668835	.	-	0	Parent=Os04t0381000-01
Chr04	irgsp1_rep	CDS	18668441	18668469	.	-	2	Parent=Os04t0381000-01
Chr04	irgsp1_rep	CDS	18668257	18668358	.	-	0	Parent=Os04t0381000-01
Chr04	irgsp1_rep	CDS	18666990	18667058	.	-	0	Parent=Os04t0381000-01
Chr04	irgsp1_rep	CDS	18666831	18666890	.	-	0	Parent=Os04t0381000-01
Chr04	irgsp1_rep	CDS	18666243	18666356	.	-	0	Parent=Os04t0381000-01
Chr04	irgsp1_rep	CDS	18665545	18665593	.	-	0	Parent=Os04t0381000-01
Chr04	irgsp1_rep	CDS	18665054	18665160	.	-	2	Parent=Os04t0381000-01
Chr04	irgsp1_rep	CDS	18664204	18664296	.	-	0	Parent=Os04t0381000-01
Chr04	irgsp1_rep	CDS	18664003	18664095	.	-	0	Parent=Os04t0381000-01
Chr04	irgsp1_rep	CDS	18663793	18663930	.	-	0	Parent=Os04t0381000-01
Chr04	irgsp1_rep	CDS	18663044	18663157	.	-	0	Parent=Os04t0381000-01
Chr04	irgsp1_rep	CDS	18662304	18662408	.	-	0	Parent=Os04t0381000-01
Chr04	irgsp1_rep	CDS	18662167	18662191	.	-	0	Parent=Os04t0381000-01
Chr04	irgsp1_rep	CDS	18661004	18661125	.	-	2	Parent=Os04t0381000-01
Chr04	irgsp1_rep	CDS	18660767	18660913	.	-	0	Parent=Os04t0381000-01
Chr04	irgsp1_rep	CDS	18660317	18660369	.	-	0	Parent=Os04t0381000-01
Chr04	irgsp1_rep	CDS	18660106	18660205	.	-	1	Parent=Os04t0381000-01
Chr04	irgsp1_rep	CDS	18659800	18660036	.	-	0	Parent=Os04t0381000-01
Chr04	irgsp1_rep	three_prime_UTR	18659540	18659799	.	-	.	Parent=Os04t0381000-01
Chr04	irgsp1_rep	mRNA	18675930	18679747	.	+	.	ID=Os04t0381100-01;Name=Os04t0381100-01;Locus_id=Os04g0381100;Note=Similar to OSIGBa0092E09.1 protein.;Transcript_evidence=AK060452 (DDBJ%2C Best hit);ORF_evidence=Q01LJ7 (UniProt);GO=Biological Process: sodium ion transport (GO:0006814),Cellular Component: membrane (GO:0016020),Molecular Function: bile acid:sodium symporter activity (GO:0008508);InterPro=Bile acid:sodium symporter (IPR002657);NIAS_FLcDNA=001-011-G05;Expression=AK060452;TENOR=Os04t0381100-01;KEGG=Os04t0381100-01
Chr04	irgsp1_rep	five_prime_UTR	18675930	18676273	.	+	.	Parent=Os04t0381100-01
Chr04	irgsp1_rep	five_prime_UTR	18676588	18676622	.	+	.	Parent=Os04t0381100-01
Chr04	irgsp1_rep	CDS	18676623	18677046	.	+	0	Parent=Os04t0381100-01
Chr04	irgsp1_rep	CDS	18677740	18677828	.	+	2	Parent=Os04t0381100-01
Chr04	irgsp1_rep	CDS	18678205	18678298	.	+	0	Parent=Os04t0381100-01
Chr04	irgsp1_rep	CDS	18678374	18678407	.	+	2	Parent=Os04t0381100-01
Chr04	irgsp1_rep	CDS	18679263	18679317	.	+	1	Parent=Os04t0381100-01
Chr04	irgsp1_rep	CDS	18679403	18679519	.	+	0	Parent=Os04t0381100-01
Chr04	irgsp1_rep	three_prime_UTR	18679520	18679747	.	+	.	Parent=Os04t0381100-01
Chr04	irgsp1_rep	mRNA	18675970	18681074	.	+	.	ID=Os04t0381100-02;Name=Os04t0381100-02;Locus_id=Os04g0381100;Note=Bile acid:sodium symporter family protein.;Transcript_evidence=AK121764 (DDBJ%2C Best hit);ORF_evidence=Q01LJ7 (UniProt);GO=Biological Process: sodium ion transport (GO:0006814),Cellular Component: membrane (GO:0016020),Molecular Function: bile acid:sodium symporter activity (GO:0008508);InterPro=Bile acid:sodium symporter (IPR002657);NIAS_FLcDNA=J033090P03;Expression=AK121764;TENOR=Os04t0381100-02;KEGG=Os04t0381100-02
Chr04	irgsp1_rep	five_prime_UTR	18675970	18676273	.	+	.	Parent=Os04t0381100-02
Chr04	irgsp1_rep	five_prime_UTR	18676588	18676622	.	+	.	Parent=Os04t0381100-02
Chr04	irgsp1_rep	CDS	18676623	18677046	.	+	0	Parent=Os04t0381100-02
Chr04	irgsp1_rep	CDS	18677740	18677828	.	+	2	Parent=Os04t0381100-02
Chr04	irgsp1_rep	CDS	18678205	18678298	.	+	0	Parent=Os04t0381100-02
Chr04	irgsp1_rep	CDS	18678374	18678407	.	+	2	Parent=Os04t0381100-02
Chr04	irgsp1_rep	CDS	18679263	18679317	.	+	1	Parent=Os04t0381100-02
Chr04	irgsp1_rep	CDS	18679403	18679486	.	+	0	Parent=Os04t0381100-02
Chr04	irgsp1_rep	CDS	18679561	18679848	.	+	0	Parent=Os04t0381100-02
Chr04	irgsp1_rep	CDS	18680577	18680729	.	+	0	Parent=Os04t0381100-02
Chr04	irgsp1_rep	three_prime_UTR	18680730	18681074	.	+	.	Parent=Os04t0381100-02
Chr04	irgsp1_rep	mRNA	18690634	18694626	.	+	.	ID=Os04t0381400-00;Name=Os04t0381400-00;Locus_id=Os04g0381400;Note=Similar to OSIGBa0092E09.2 protein.;Transcript_evidence=AK357002 (DDBJ);ORF_evidence=Q01LJ6 (UniProt);TENOR=Os04t0381400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	18690634	18691020	.	+	0	Parent=Os04t0381400-00
Chr04	irgsp1_rep	CDS	18691761	18691805	.	+	0	Parent=Os04t0381400-00
Chr04	irgsp1_rep	CDS	18692275	18692277	.	+	0	Parent=Os04t0381400-00
Chr04	irgsp1_rep	three_prime_UTR	18692278	18692392	.	+	.	Parent=Os04t0381400-00
Chr04	irgsp1_rep	three_prime_UTR	18692747	18692816	.	+	.	Parent=Os04t0381400-00
Chr04	irgsp1_rep	three_prime_UTR	18692899	18692947	.	+	.	Parent=Os04t0381400-00
Chr04	irgsp1_rep	three_prime_UTR	18693422	18693519	.	+	.	Parent=Os04t0381400-00
Chr04	irgsp1_rep	three_prime_UTR	18694087	18694225	.	+	.	Parent=Os04t0381400-00
Chr04	irgsp1_rep	three_prime_UTR	18694364	18694626	.	+	.	Parent=Os04t0381400-00
Chr04	irgsp1_rep	mRNA	18695867	18696438	.	+	.	ID=Os04t0381500-01;Name=Os04t0381500-01;Locus_id=Os04g0381500;Note=Conserved hypothetical protein.;Transcript_evidence=AK111141 (DDBJ%2C Best hit);ORF_evidence=A2XSN0 (UniProt);NIAS_FLcDNA=002-176-E02;TENOR=Os04t0381500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	18695867	18695867	.	+	.	Parent=Os04t0381500-01
Chr04	irgsp1_rep	CDS	18695868	18696275	.	+	0	Parent=Os04t0381500-01
Chr04	irgsp1_rep	three_prime_UTR	18696276	18696438	.	+	.	Parent=Os04t0381500-01
Chr04	irgsp1_rep	mRNA	18702259	18707741	.	+	.	ID=Os04t0381600-00;Name=Os04t0381600-00;Locus_id=Os04g0381600;Note=GTPase EngC family protein.;Transcript_evidence=AK361050 (DDBJ);ORF_evidence=Q01LJ5 (UniProt);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Ribosome biogenesis GTPase RsgA%2C putative (IPR004881),EngC GTPase (IPR010914),Nucleic acid-binding%2C OB-fold-like (IPR016027);TENOR=Os04t0381600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	18702259	18703065	.	+	0	Parent=Os04t0381600-00
Chr04	irgsp1_rep	CDS	18704421	18704642	.	+	0	Parent=Os04t0381600-00
Chr04	irgsp1_rep	CDS	18706171	18706359	.	+	0	Parent=Os04t0381600-00
Chr04	irgsp1_rep	CDS	18706522	18706715	.	+	0	Parent=Os04t0381600-00
Chr04	irgsp1_rep	CDS	18707296	18707431	.	+	1	Parent=Os04t0381600-00
Chr04	irgsp1_rep	three_prime_UTR	18707432	18707741	.	+	.	Parent=Os04t0381600-00
Chr04	irgsp1_rep	mRNA	18720467	18722735	.	+	.	ID=Os04t0381700-01;Name=Os04t0381700-01;Locus_id=Os04g0381700;RAP-DB Gene Symbol Synonym(s)=OsbHLH156;Oryzabase Gene Symbol Synonym(s)=OsbHLH156;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 156;Note=Basic helix-loop-helix (bHLH) transcription factor%2C Fe homeostasis%2C Regulation of ferric (Strategy II) iron acquisition;Transcript_evidence=CT835040 (Guangluai4);ORF_evidence=A0A0N7KIY3;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Helix-loop-helix DNA-binding domain superfamily (IPR036638),Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);Manual Curation=October 7%2C 2019;Literature_PMID=31574173;Oryzabase=15427;TENOR=Os04t0381700-00;KEGG=Os04t0381700-00;Subcellular location=nucleus (GO:0005634)
Chr04	irgsp1_rep	five_prime_UTR	18720467	18720535	.	+	.	Parent=Os04t0381700-01
Chr04	irgsp1_rep	CDS	18720536	18721021	.	+	0	Parent=Os04t0381700-01
Chr04	irgsp1_rep	CDS	18721115	18721570	.	+	0	Parent=Os04t0381700-01
Chr04	irgsp1_rep	CDS	18722350	18722466	.	+	0	Parent=Os04t0381700-01
Chr04	irgsp1_rep	three_prime_UTR	18722467	18722735	.	+	.	Parent=Os04t0381700-01
Chr04	irgsp1_rep	mRNA	18736469	18737704	.	+	.	ID=Os04t0382100-01;Name=Os04t0382100-01;Locus_id=Os04g0382100;Oryzabase Gene Symbol Synonym(s)=OsSWIB;Oryzabase Gene Name Synonym(s)=SWIB complex BAF60b domain-containing protein;Note=SWIB/MDM2 domain containing protein.;Transcript_evidence=AK108218 (DDBJ%2C Best hit);ORF_evidence=Q01LJ3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=SWIB/MDM2 domain (IPR003121);NIAS_FLcDNA=002-140-E07;Oryzabase=11367;Expression=AK108218;TENOR=Os04t0382100-01;KEGG=Os04t0382100-01
Chr04	irgsp1_rep	five_prime_UTR	18736469	18736470	.	+	.	Parent=Os04t0382100-01
Chr04	irgsp1_rep	CDS	18736471	18737426	.	+	0	Parent=Os04t0382100-01
Chr04	irgsp1_rep	CDS	18737531	18737615	.	+	1	Parent=Os04t0382100-01
Chr04	irgsp1_rep	three_prime_UTR	18737616	18737704	.	+	.	Parent=Os04t0382100-01
Chr04	irgsp1_rep	mRNA	18740622	18743199	.	+	.	ID=Os04t0382200-01;Name=Os04t0382200-01;Locus_id=Os04g0382200;RAP-DB Gene Symbol Synonym(s)=EXO70F3%2C OsEXO70F3%2C OsExo70F3%2C OrysaF3_Exo70%2C OsExo70-F3%2C Exo70-F3;RAP-DB Gene Name Synonym(s)=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN F3%2C exocyst subunit EXO70 family protein F3;CGSNL Gene Symbol=EXO70F3;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN F3;Oryzabase Gene Symbol Synonym(s)=OsEXO70F3%2C OsExo70F3%2C OrysaF3_Exo70%2C OsExo70-F3%2C Exo70-F3;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein F3;Note=Component of Exo70 exocyst complex%2C Response to the fungal effector%2C AVR-Pii%2C Pii-dependent resistance;Transcript_evidence=AK103564;ORF_evidence=Q7XVB9;GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exocyst complex protein Exo70 (IPR004140),Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=J033132L03;Manual Curation=September 2%2C 2015;Literature_PMID=26186703;Oryzabase=20333;Expression=AK103564;TENOR=Os04t0382200-01;KEGG=Os04t0382200-01
Chr04	irgsp1_rep	five_prime_UTR	18740622	18740730	.	+	.	Parent=Os04t0382200-01
Chr04	irgsp1_rep	CDS	18740731	18742797	.	+	0	Parent=Os04t0382200-01
Chr04	irgsp1_rep	three_prime_UTR	18742798	18743199	.	+	.	Parent=Os04t0382200-01
Chr04	irgsp1_rep	mRNA	18740826	18742760	.	-	.	ID=Os04t0382250-00;Name=Os04t0382250-00;Locus_id=Os04g0382250;Note=Hypothetical protein.;Transcript_evidence=AK374499 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0382250-00
Chr04	irgsp1_rep	five_prime_UTR	18741652	18742760	.	-	.	Parent=Os04t0382250-00
Chr04	irgsp1_rep	CDS	18741460	18741651	.	-	0	Parent=Os04t0382250-00
Chr04	irgsp1_rep	CDS	18741102	18741299	.	-	0	Parent=Os04t0382250-00
Chr04	irgsp1_rep	three_prime_UTR	18740826	18741101	.	-	.	Parent=Os04t0382250-00
Chr04	irgsp1_rep	mRNA	18746928	18752050	.	-	.	ID=Os04t0382300-01;Name=Os04t0382300-01;Locus_id=Os04g0382300;Oryzabase Gene Symbol Synonym(s)=OsCBSCBS3;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSCBS3%2C CBS domain containing protein OsCBSCBS3;Note=Similar to SNF1-related protein kinase regulatory gamma subunit 1 (AKIN gamma1) (AKING1).;Transcript_evidence=AK101795 (DDBJ%2C Best hit);ORF_evidence=Q01LJ2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein binding (GO:0005515);InterPro=Cystathionine beta-synthase%2C core (IPR000644),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J033066B14;Oryzabase=10348;Expression=AK101795;TENOR=Os04t0382300-01;KEGG=Os04t0382300-01
Chr04	irgsp1_rep	five_prime_UTR	18751851	18752050	.	-	.	Parent=Os04t0382300-01
Chr04	irgsp1_rep	CDS	18751691	18751850	.	-	0	Parent=Os04t0382300-01
Chr04	irgsp1_rep	CDS	18749433	18749605	.	-	2	Parent=Os04t0382300-01
Chr04	irgsp1_rep	CDS	18748642	18748848	.	-	0	Parent=Os04t0382300-01
Chr04	irgsp1_rep	CDS	18748289	18748564	.	-	0	Parent=Os04t0382300-01
Chr04	irgsp1_rep	CDS	18747615	18747778	.	-	0	Parent=Os04t0382300-01
Chr04	irgsp1_rep	CDS	18747141	18747438	.	-	1	Parent=Os04t0382300-01
Chr04	irgsp1_rep	three_prime_UTR	18746928	18747140	.	-	.	Parent=Os04t0382300-01
Chr04	irgsp1_rep	mRNA	18747017	18751934	.	-	.	ID=Os04t0382300-02;Name=Os04t0382300-02;Locus_id=Os04g0382300;Oryzabase Gene Symbol Synonym(s)=OsCBSCBS3;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSCBS3%2C CBS domain containing protein OsCBSCBS3;Note=Similar to SNF1-related protein kinase regulatory gamma subunit 1 (AKIN gamma1) (AKING1).;Transcript_evidence=AK071912 (DDBJ%2C Best hit);ORF_evidence=Q01LJ2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein binding (GO:0005515);InterPro=Cystathionine beta-synthase%2C core (IPR000644),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J013063J16;Oryzabase=10348;Expression=AK071912;TENOR=Os04t0382300-02;KEGG=Os04t0382300-02
Chr04	irgsp1_rep	five_prime_UTR	18751851	18751934	.	-	.	Parent=Os04t0382300-02
Chr04	irgsp1_rep	CDS	18751691	18751850	.	-	0	Parent=Os04t0382300-02
Chr04	irgsp1_rep	CDS	18749433	18749605	.	-	2	Parent=Os04t0382300-02
Chr04	irgsp1_rep	CDS	18748642	18748848	.	-	0	Parent=Os04t0382300-02
Chr04	irgsp1_rep	CDS	18748289	18748564	.	-	0	Parent=Os04t0382300-02
Chr04	irgsp1_rep	CDS	18747615	18747778	.	-	0	Parent=Os04t0382300-02
Chr04	irgsp1_rep	CDS	18747141	18747438	.	-	1	Parent=Os04t0382300-02
Chr04	irgsp1_rep	three_prime_UTR	18747017	18747140	.	-	.	Parent=Os04t0382300-02
Chr04	irgsp1_rep	mRNA	18746934	18749519	.	-	.	ID=Os04t0382300-03;Name=Os04t0382300-03;Locus_id=Os04g0382300;Oryzabase Gene Symbol Synonym(s)=OsCBSCBS3;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSCBS3%2C CBS domain containing protein OsCBSCBS3;Note=Similar to OSIGBa0092E09.6 protein.;Transcript_evidence=AK104732 (DDBJ%2C Best hit),AK104588 (DDBJ%2C Best hit);ORF_evidence=Q01LJ2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein binding (GO:0005515);InterPro=Cystathionine beta-synthase%2C core (IPR000644),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=001-038-C08,006-307-G07;Oryzabase=10348;Expression=AK104732;TENOR=Os04t0382300-03;KEGG=Os04t0382300-03
Chr04	irgsp1_rep	CDS	18749433	18749519	.	-	0	Parent=Os04t0382300-03
Chr04	irgsp1_rep	CDS	18748642	18748848	.	-	0	Parent=Os04t0382300-03
Chr04	irgsp1_rep	CDS	18748289	18748564	.	-	0	Parent=Os04t0382300-03
Chr04	irgsp1_rep	CDS	18747615	18747778	.	-	0	Parent=Os04t0382300-03
Chr04	irgsp1_rep	CDS	18747141	18747438	.	-	1	Parent=Os04t0382300-03
Chr04	irgsp1_rep	three_prime_UTR	18746934	18747140	.	-	.	Parent=Os04t0382300-03
Chr04	irgsp1_rep	mRNA	18757823	18758848	.	-	.	ID=Os04t0382400-01;Name=Os04t0382400-01;Locus_id=Os04g0382400;Note=Similar to OSIGBa0092E09.7 protein.;Transcript_evidence=AK107298 (DDBJ%2C Best hit);ORF_evidence=Q01LJ1 (UniProt);NIAS_FLcDNA=002-126-C06;Expression=AK107298;TENOR=Os04t0382400-01;KEGG=Os04t0382400-01
Chr04	irgsp1_rep	five_prime_UTR	18758634	18758848	.	-	.	Parent=Os04t0382400-01
Chr04	irgsp1_rep	CDS	18758028	18758633	.	-	0	Parent=Os04t0382400-01
Chr04	irgsp1_rep	three_prime_UTR	18757823	18758027	.	-	.	Parent=Os04t0382400-01
Chr04	irgsp1_rep	mRNA	18766312	18769229	.	+	.	ID=Os04t0382550-00;Name=Os04t0382550-00;Locus_id=Os04g0382550;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0014n19 (Wheat FLcDNA);ORF_evidence=NP_001057661.2 (RefSeq);TENOR=Os04t0382550-00
Chr04	irgsp1_rep	five_prime_UTR	18766312	18766318	.	+	.	Parent=Os04t0382550-00
Chr04	irgsp1_rep	CDS	18766319	18766576	.	+	0	Parent=Os04t0382550-00
Chr04	irgsp1_rep	three_prime_UTR	18766577	18767039	.	+	.	Parent=Os04t0382550-00
Chr04	irgsp1_rep	three_prime_UTR	18767188	18769229	.	+	.	Parent=Os04t0382550-00
Chr04	irgsp1_rep	mRNA	18770713	18776106	.	+	.	ID=Os04t0382700-01;Name=Os04t0382700-01;Locus_id=Os04g0382700;Note=Vacuolar protein sorting-associated protein 11 domain containing protein.;Transcript_evidence=AK103116 (DDBJ%2C Best hit);ORF_evidence=XP_002883682.1 (RefSeq);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Clathrin%2C heavy chain/VPS%2C 7-fold repeat (IPR000547),Zinc finger%2C RING-type (IPR001841),WD40 repeat-like-containing domain (IPR011046),Tetratricopeptide-like helical (IPR011990),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Vacuolar protein sorting-associated protein 11 (IPR016528),Vacuolar protein sorting protein 11%2C C-terminal (IPR024763);NIAS_FLcDNA=J033119F23;Expression=AK103116;TENOR=Os04t0382700-01;KEGG=Os04t0382700-01
Chr04	irgsp1_rep	five_prime_UTR	18770713	18770905	.	+	.	Parent=Os04t0382700-01
Chr04	irgsp1_rep	CDS	18770906	18771124	.	+	0	Parent=Os04t0382700-01
Chr04	irgsp1_rep	CDS	18771605	18771778	.	+	0	Parent=Os04t0382700-01
Chr04	irgsp1_rep	CDS	18771873	18772187	.	+	0	Parent=Os04t0382700-01
Chr04	irgsp1_rep	CDS	18772921	18774699	.	+	0	Parent=Os04t0382700-01
Chr04	irgsp1_rep	CDS	18775464	18775820	.	+	0	Parent=Os04t0382700-01
Chr04	irgsp1_rep	three_prime_UTR	18775821	18776106	.	+	.	Parent=Os04t0382700-01
Chr04	irgsp1_rep	mRNA	18774540	18776122	.	+	.	ID=Os04t0382700-02;Name=Os04t0382700-02;Locus_id=Os04g0382700;Note=ATVPS11 (Arabidopsis thaliana vacuolar protein sorting 11)%3B transporter.;Transcript_evidence=AK066976 (DDBJ%2C Best hit);ORF_evidence=NP_027676.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Vacuolar protein sorting protein 11%2C C-terminal (IPR024763);NIAS_FLcDNA=J013089D16;Expression=AK066976;TENOR=Os04t0382700-02;KEGG=Os04t0382700-02
Chr04	irgsp1_rep	five_prime_UTR	18774540	18774540	.	+	.	Parent=Os04t0382700-02
Chr04	irgsp1_rep	CDS	18774541	18774699	.	+	0	Parent=Os04t0382700-02
Chr04	irgsp1_rep	CDS	18775464	18775820	.	+	0	Parent=Os04t0382700-02
Chr04	irgsp1_rep	three_prime_UTR	18775821	18776122	.	+	.	Parent=Os04t0382700-02
Chr04	irgsp1_rep	mRNA	18779947	18783319	.	+	.	ID=Os04t0382800-00;Name=Os04t0382800-00;Locus_id=Os04g0382800;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XVC5 (UniProt);TENOR=Os04t0382800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	18779947	18780414	.	+	0	Parent=Os04t0382800-00
Chr04	irgsp1_rep	CDS	18780429	18780557	.	+	0	Parent=Os04t0382800-00
Chr04	irgsp1_rep	CDS	18782111	18782885	.	+	0	Parent=Os04t0382800-00
Chr04	irgsp1_rep	CDS	18782976	18783319	.	+	2	Parent=Os04t0382800-00
Chr04	irgsp1_rep	mRNA	18786423	18787210	.	+	.	ID=Os04t0382900-01;Name=Os04t0382900-01;Locus_id=Os04g0382900;CGSNL Gene Symbol=RALF14;CGSNL Gene Name=RAPID ALKALIZATION FACTOR 14;Oryzabase Gene Symbol Synonym(s)=OsRALF-14%2C OsRALF14%2C RALF-14;Oryzabase Gene Name Synonym(s)=Rapid alkalization factor 14;Note=Conserved hypothetical protein.;Transcript_evidence=AK062807 (DDBJ%2C Best hit);ORF_evidence=B8AT64 (UniProt);NIAS_FLcDNA=001-107-D07;Oryzabase=21118;Expression=AK062807;TENOR=Os04t0382900-01;KEGG=Os04t0382900-01
Chr04	irgsp1_rep	five_prime_UTR	18786423	18786445	.	+	.	Parent=Os04t0382900-01
Chr04	irgsp1_rep	CDS	18786446	18786850	.	+	0	Parent=Os04t0382900-01
Chr04	irgsp1_rep	three_prime_UTR	18786851	18787210	.	+	.	Parent=Os04t0382900-01
Chr04	irgsp1_rep	mRNA	18801134	18801475	.	+	.	ID=Os04t0383100-00;Name=Os04t0383100-00;Locus_id=Os04g0383100;CGSNL Gene Symbol=RALF15;CGSNL Gene Name=RAPID ALKALIZATION FACTOR 15;Oryzabase Gene Symbol Synonym(s)=OsRALF-15%2C OsRALF15%2C RALF-15;Oryzabase Gene Name Synonym(s)=Rapid alkalization factor 15;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001173906.1 (RefSeq);Oryzabase=21119;TENOR=Os04t0383100-00
Chr04	irgsp1_rep	CDS	18801134	18801475	.	+	0	Parent=Os04t0383100-00
Chr04	irgsp1_rep	mRNA	18823823	18824451	.	+	.	ID=Os04t0383700-01;Name=Os04t0383700-01;Locus_id=Os04g0383700;CGSNL Gene Symbol=RALF16;CGSNL Gene Name=RAPID ALKALIZATION FACTOR 16;Oryzabase Gene Symbol Synonym(s)=OsRALF-16%2C OsRALF16%2C RALF-16;Oryzabase Gene Name Synonym(s)=Rapid alkalization factor 16;Note=Conserved hypothetical protein.;Transcript_evidence=AK063211 (DDBJ%2C Best hit);ORF_evidence=A2XSQ0 (UniProt);NIAS_FLcDNA=001-112-D07;Oryzabase=21120;TENOR=Os04t0383700-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	18823823	18823827	.	+	.	Parent=Os04t0383700-01
Chr04	irgsp1_rep	CDS	18823828	18824166	.	+	0	Parent=Os04t0383700-01
Chr04	irgsp1_rep	three_prime_UTR	18824167	18824451	.	+	.	Parent=Os04t0383700-01
Chr04	irgsp1_rep	mRNA	18827079	18827529	.	+	.	ID=Os04t0384000-01;Name=Os04t0384000-01;Locus_id=Os04g0384000;CGSNL Gene Symbol=RALF17;CGSNL Gene Name=RAPID ALKALIZATION FACTOR 17;Oryzabase Gene Symbol Synonym(s)=OsRALF-17%2C OsRALF17%2C RALF-17;Oryzabase Gene Name Synonym(s)=Rapid alkalization factor 17;Note=Hypothetical conserved gene.;Transcript_evidence=AK062717 (DDBJ%2C Best hit),AK068656 (DDBJ%2C Best hit);ORF_evidence=A3AT58 (UniProt);NIAS_FLcDNA=001-106-C10,J013161N11;Oryzabase=21121;TENOR=Os04t0384000-01;KEGG=Os04t0384000-01
Chr04	irgsp1_rep	five_prime_UTR	18827079	18827085	.	+	.	Parent=Os04t0384000-01
Chr04	irgsp1_rep	CDS	18827086	18827448	.	+	0	Parent=Os04t0384000-01
Chr04	irgsp1_rep	three_prime_UTR	18827449	18827529	.	+	.	Parent=Os04t0384000-01
Chr04	irgsp1_rep	mRNA	18847035	18850569	.	-	.	ID=Os04t0384200-01;Name=Os04t0384200-01;Locus_id=Os04g0384200;Note=Conserved hypothetical protein.;Transcript_evidence=AK241388 (DDBJ%2C Best hit);ORF_evidence=B9FEU8 (UniProt);NIAS_FLcDNA=J065156H14;TENOR=Os04t0384200-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	18850333	18850569	.	-	.	Parent=Os04t0384200-01
Chr04	irgsp1_rep	five_prime_UTR	18849870	18849915	.	-	.	Parent=Os04t0384200-01
Chr04	irgsp1_rep	CDS	18849797	18849869	.	-	0	Parent=Os04t0384200-01
Chr04	irgsp1_rep	CDS	18849544	18849675	.	-	2	Parent=Os04t0384200-01
Chr04	irgsp1_rep	CDS	18849139	18849266	.	-	2	Parent=Os04t0384200-01
Chr04	irgsp1_rep	CDS	18848758	18848898	.	-	0	Parent=Os04t0384200-01
Chr04	irgsp1_rep	CDS	18848417	18848457	.	-	0	Parent=Os04t0384200-01
Chr04	irgsp1_rep	CDS	18847196	18847232	.	-	1	Parent=Os04t0384200-01
Chr04	irgsp1_rep	three_prime_UTR	18847035	18847195	.	-	.	Parent=Os04t0384200-01
Chr04	irgsp1_rep	mRNA	18869479	18870143	.	-	.	ID=Os04t0384650-01;Name=Os04t0384650-01;Locus_id=Os04g0384650;Note=Non-protein coding transcript.;Transcript_evidence=AK062473 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-103-F01;TENOR=Os04t0384650-01
Chr04	irgsp1_rep	exon	18869479	18870143	.	-	.	Parent=Os04t0384650-01
Chr04	irgsp1_rep	mRNA	18869634	18870293	.	+	.	ID=Os04t0384800-01;Name=Os04t0384800-01;Locus_id=Os04g0384800;CGSNL Gene Symbol=RALF19;CGSNL Gene Name=RAPID ALKALIZATION FACTOR 19;Oryzabase Gene Symbol Synonym(s)=OsRALF-19%2C OsRALF19%2C RALF-19;Oryzabase Gene Name Synonym(s)=Rapid alkalization factor 19;Note=Conserved hypothetical protein.;Transcript_evidence=AK063201 (DDBJ%2C Best hit);ORF_evidence=NP_001052546.2 (RefSeq);NIAS_FLcDNA=001-112-C08;Oryzabase=21123;Expression=AK063201;TENOR=Os04t0384800-01;KEGG=Os04t0384800-01
Chr04	irgsp1_rep	five_prime_UTR	18869634	18869670	.	+	.	Parent=Os04t0384800-01
Chr04	irgsp1_rep	CDS	18869671	18870066	.	+	0	Parent=Os04t0384800-01
Chr04	irgsp1_rep	three_prime_UTR	18870067	18870293	.	+	.	Parent=Os04t0384800-01
Chr04	irgsp1_rep	mRNA	18890406	18890819	.	+	.	ID=Os04t0385350-00;Name=Os04t0385350-00;Locus_id=Os04g0385350;Note=Hypothetical protein.;Transcript_evidence=AK372466 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0385350-00
Chr04	irgsp1_rep	CDS	18890406	18890819	.	+	0	Parent=Os04t0385350-00
Chr04	irgsp1_rep	mRNA	18905542	18907154	.	-	.	ID=Os04t0385600-01;Name=Os04t0385600-01;Locus_id=Os04g0385600;Oryzabase Gene Symbol Synonym(s)=Os_F0796;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK287830 (DDBJ%2C Best hit);ORF_evidence=NP_001149759.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C MYND-type (IPR002893),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J065185L21;Oryzabase=17447;TENOR=Os04t0385600-01;KEGG=Os04t0385600-01
Chr04	irgsp1_rep	five_prime_UTR	18907092	18907154	.	-	.	Parent=Os04t0385600-01
Chr04	irgsp1_rep	CDS	18906847	18907091	.	-	0	Parent=Os04t0385600-01
Chr04	irgsp1_rep	CDS	18906599	18906761	.	-	1	Parent=Os04t0385600-01
Chr04	irgsp1_rep	CDS	18905725	18906504	.	-	0	Parent=Os04t0385600-01
Chr04	irgsp1_rep	three_prime_UTR	18905542	18905724	.	-	.	Parent=Os04t0385600-01
Chr04	irgsp1_rep	mRNA	18924957	18928259	.	+	.	ID=Os04t0385650-01;Name=Os04t0385650-01;Locus_id=Os04g0385650;Note=Conserved hypothetical protein.;Transcript_evidence=AK288290 (DDBJ%2C Best hit);ORF_evidence=Q75LF4 (UniProt);NIAS_FLcDNA=J090019D06;TENOR=Os04t0385650-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	18924957	18927658	.	+	.	Parent=Os04t0385650-01
Chr04	irgsp1_rep	CDS	18927659	18927859	.	+	0	Parent=Os04t0385650-01
Chr04	irgsp1_rep	three_prime_UTR	18927860	18928259	.	+	.	Parent=Os04t0385650-01
Chr04	irgsp1_rep	mRNA	18933887	18937369	.	+	.	ID=Os04t0385700-01;Name=Os04t0385700-01;Locus_id=Os04g0385700;Note=Similar to splicing factor-related.;Transcript_evidence=AK121107 (DDBJ%2C Best hit);ORF_evidence=NP_199943.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),K Homology (IPR004087),K Homology%2C type 1 (IPR004088),K Homology%2C type 1%2C subgroup (IPR018111);NIAS_FLcDNA=J023072J20;TENOR=Os04t0385700-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	18933887	18934966	.	+	0	Parent=Os04t0385700-01
Chr04	irgsp1_rep	three_prime_UTR	18934967	18936239	.	+	.	Parent=Os04t0385700-01
Chr04	irgsp1_rep	three_prime_UTR	18937094	18937369	.	+	.	Parent=Os04t0385700-01
Chr04	irgsp1_rep	mRNA	18948775	18949649	.	+	.	ID=Os04t0385900-01;Name=Os04t0385900-01;Locus_id=Os04g0385900;Note=Similar to OSIGBa0148P16.1 protein.;Transcript_evidence=AK240960 (DDBJ%2C Best hit);ORF_evidence=Q01L04 (UniProt);NIAS_FLcDNA=J065045M09;TENOR=Os04t0385900-01;KEGG=Os04t0385900-01
Chr04	irgsp1_rep	five_prime_UTR	18948775	18948899	.	+	.	Parent=Os04t0385900-01
Chr04	irgsp1_rep	CDS	18948900	18949253	.	+	0	Parent=Os04t0385900-01
Chr04	irgsp1_rep	three_prime_UTR	18949254	18949649	.	+	.	Parent=Os04t0385900-01
Chr04	irgsp1_rep	mRNA	18975772	18976701	.	+	.	ID=Os04t0386300-01;Name=Os04t0386300-01;Locus_id=Os04g0386300;Note=Similar to OSIGBa0148P16.3 protein.;Transcript_evidence=AK064720 (DDBJ%2C Best hit);ORF_evidence=Q01L02 (UniProt);NIAS_FLcDNA=002-118-E10;TENOR=Os04t0386300-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	18975772	18975808	.	+	.	Parent=Os04t0386300-01
Chr04	irgsp1_rep	CDS	18975809	18975914	.	+	0	Parent=Os04t0386300-01
Chr04	irgsp1_rep	CDS	18976091	18976392	.	+	2	Parent=Os04t0386300-01
Chr04	irgsp1_rep	three_prime_UTR	18976393	18976701	.	+	.	Parent=Os04t0386300-01
Chr04	irgsp1_rep	mRNA	18984714	18987786	.	+	.	ID=Os04t0386500-01;Name=Os04t0386500-01;Locus_id=Os04g0386500;Note=Similar to OSIGBa0148P16.4 protein.;Transcript_evidence=AK070265 (DDBJ%2C Best hit);ORF_evidence=Q01L01 (UniProt);InterPro=Uncharacterised protein family UPF0250 (IPR007454);NIAS_FLcDNA=J023045N19;TENOR=Os04t0386500-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	18984714	18984715	.	+	.	Parent=Os04t0386500-01
Chr04	irgsp1_rep	CDS	18984716	18984888	.	+	0	Parent=Os04t0386500-01
Chr04	irgsp1_rep	CDS	18984953	18985038	.	+	1	Parent=Os04t0386500-01
Chr04	irgsp1_rep	CDS	18985645	18985748	.	+	2	Parent=Os04t0386500-01
Chr04	irgsp1_rep	CDS	18986414	18986527	.	+	0	Parent=Os04t0386500-01
Chr04	irgsp1_rep	CDS	18986953	18987036	.	+	0	Parent=Os04t0386500-01
Chr04	irgsp1_rep	CDS	18987176	18987232	.	+	0	Parent=Os04t0386500-01
Chr04	irgsp1_rep	three_prime_UTR	18987233	18987311	.	+	.	Parent=Os04t0386500-01
Chr04	irgsp1_rep	three_prime_UTR	18987392	18987786	.	+	.	Parent=Os04t0386500-01
Chr04	irgsp1_rep	mRNA	18987903	18992923	.	-	.	ID=Os04t0386600-01;Name=Os04t0386600-01;Locus_id=Os04g0386600;Note=Pyruvate/Phosphoenolpyruvate kinase%2C catalytic core domain containing protein.;Transcript_evidence=AK067193 (DDBJ%2C Best hit);ORF_evidence=Q01L00 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Isocitrate lyase/phosphorylmutase (IPR000918),Pyruvate/Phosphoenolpyruvate kinase (IPR015813);NIAS_FLcDNA=J013098I05;Expression=AK067193;TENOR=Os04t0386600-01;KEGG=Os04t0386600-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	18992796	18992923	.	-	.	Parent=Os04t0386600-01
Chr04	irgsp1_rep	CDS	18992615	18992795	.	-	0	Parent=Os04t0386600-01
Chr04	irgsp1_rep	CDS	18991800	18992011	.	-	2	Parent=Os04t0386600-01
Chr04	irgsp1_rep	CDS	18990089	18990370	.	-	0	Parent=Os04t0386600-01
Chr04	irgsp1_rep	CDS	18989563	18989685	.	-	0	Parent=Os04t0386600-01
Chr04	irgsp1_rep	CDS	18988588	18988803	.	-	0	Parent=Os04t0386600-01
Chr04	irgsp1_rep	CDS	18988402	18988438	.	-	0	Parent=Os04t0386600-01
Chr04	irgsp1_rep	CDS	18988192	18988310	.	-	2	Parent=Os04t0386600-01
Chr04	irgsp1_rep	three_prime_UTR	18987903	18988191	.	-	.	Parent=Os04t0386600-01
Chr04	irgsp1_rep	mRNA	18987961	18992882	.	-	.	ID=Os04t0386600-02;Name=Os04t0386600-02;Locus_id=Os04g0386600;Note=Pyruvate/Phosphoenolpyruvate kinase%2C catalytic core domain containing protein.;Transcript_evidence=AK104891 (DDBJ%2C Best hit);ORF_evidence=Q01L00 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Isocitrate lyase/phosphorylmutase (IPR000918),Pyruvate/Phosphoenolpyruvate kinase (IPR015813);NIAS_FLcDNA=001-045-D08;Expression=AK104891;TENOR=Os04t0386600-02;KEGG=Os04t0386600-02;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	18992796	18992882	.	-	.	Parent=Os04t0386600-02
Chr04	irgsp1_rep	CDS	18992615	18992795	.	-	0	Parent=Os04t0386600-02
Chr04	irgsp1_rep	CDS	18991800	18992011	.	-	2	Parent=Os04t0386600-02
Chr04	irgsp1_rep	CDS	18990089	18990370	.	-	0	Parent=Os04t0386600-02
Chr04	irgsp1_rep	CDS	18989563	18989685	.	-	0	Parent=Os04t0386600-02
Chr04	irgsp1_rep	CDS	18988588	18988803	.	-	0	Parent=Os04t0386600-02
Chr04	irgsp1_rep	CDS	18988402	18988438	.	-	0	Parent=Os04t0386600-02
Chr04	irgsp1_rep	CDS	18988192	18988310	.	-	2	Parent=Os04t0386600-02
Chr04	irgsp1_rep	three_prime_UTR	18987961	18988191	.	-	.	Parent=Os04t0386600-02
Chr04	irgsp1_rep	mRNA	18988688	18992884	.	+	.	ID=Os04t0386650-00;Name=Os04t0386650-00;Locus_id=Os04g0386650;Note=Hypothetical gene.;Transcript_evidence=BT016201 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0386650-00;KEGG=Os04t0386650-00;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	18988688	18988777	.	+	.	Parent=Os04t0386650-00
Chr04	irgsp1_rep	five_prime_UTR	18989540	18989679	.	+	.	Parent=Os04t0386650-00
Chr04	irgsp1_rep	five_prime_UTR	18990079	18990363	.	+	.	Parent=Os04t0386650-00
Chr04	irgsp1_rep	five_prime_UTR	18991791	18991962	.	+	.	Parent=Os04t0386650-00
Chr04	irgsp1_rep	CDS	18991963	18992009	.	+	0	Parent=Os04t0386650-00
Chr04	irgsp1_rep	CDS	18992613	18992778	.	+	1	Parent=Os04t0386650-00
Chr04	irgsp1_rep	three_prime_UTR	18992779	18992884	.	+	.	Parent=Os04t0386650-00
Chr04	irgsp1_rep	mRNA	18994509	18995666	.	+	.	ID=Os04t0386700-01;Name=Os04t0386700-01;Locus_id=Os04g0386700;Note=Similar to OSIGBa0148P16.6 protein.;Transcript_evidence=AK240915 (DDBJ%2C Best hit);ORF_evidence=Q01KZ9 (UniProt);NIAS_FLcDNA=J065037K20;TENOR=Os04t0386700-01;KEGG=Os04t0386700-01
Chr04	irgsp1_rep	five_prime_UTR	18994509	18994595	.	+	.	Parent=Os04t0386700-01
Chr04	irgsp1_rep	CDS	18994596	18994903	.	+	0	Parent=Os04t0386700-01
Chr04	irgsp1_rep	CDS	18994990	18995506	.	+	1	Parent=Os04t0386700-01
Chr04	irgsp1_rep	three_prime_UTR	18995507	18995666	.	+	.	Parent=Os04t0386700-01
Chr04	irgsp1_rep	mRNA	18997866	18998714	.	-	.	ID=Os04t0386900-01;Name=Os04t0386900-01;Locus_id=Os04g0386900;Note=Transcriptional factor B3 family protein.;Transcript_evidence=AK119999 (DDBJ%2C Best hit);ORF_evidence=Q01KZ7 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=002-184-H05;Expression=AK119999;TENOR=Os04t0386900-01;KEGG=Os04t0386900-01
Chr04	irgsp1_rep	CDS	18998460	18998714	.	-	0	Parent=Os04t0386900-01
Chr04	irgsp1_rep	CDS	18998026	18998340	.	-	0	Parent=Os04t0386900-01
Chr04	irgsp1_rep	three_prime_UTR	18997866	18998025	.	-	.	Parent=Os04t0386900-01
Chr04	irgsp1_rep	mRNA	19005244	19005588	.	-	.	ID=Os04t0387000-00;Name=Os04t0387000-00;Locus_id=Os04g0387000;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A3AT78 (UniProt);TENOR=Os04t0387000-00;KEGG=Os04t0387000-00
Chr04	irgsp1_rep	CDS	19005244	19005588	.	-	0	Parent=Os04t0387000-00
Chr04	irgsp1_rep	mRNA	19020605	19037718	.	+	.	ID=Os04t0387300-01;Name=Os04t0387300-01;Locus_id=Os04g0387300;Note=Similar to OSIGBa0075F02.1 protein.;Transcript_evidence=AK111796 (DDBJ%2C Best hit);ORF_evidence=Q01LF8 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box (IPR002100);NIAS_FLcDNA=J023103N18;TENOR=Os04t0387300-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	19020605	19020807	.	+	0	Parent=Os04t0387300-01
Chr04	irgsp1_rep	CDS	19035514	19035592	.	+	1	Parent=Os04t0387300-01
Chr04	irgsp1_rep	CDS	19035985	19036002	.	+	0	Parent=Os04t0387300-01
Chr04	irgsp1_rep	three_prime_UTR	19036003	19036109	.	+	.	Parent=Os04t0387300-01
Chr04	irgsp1_rep	three_prime_UTR	19036191	19036290	.	+	.	Parent=Os04t0387300-01
Chr04	irgsp1_rep	three_prime_UTR	19036890	19036925	.	+	.	Parent=Os04t0387300-01
Chr04	irgsp1_rep	three_prime_UTR	19037090	19037164	.	+	.	Parent=Os04t0387300-01
Chr04	irgsp1_rep	three_prime_UTR	19037263	19037718	.	+	.	Parent=Os04t0387300-01
Chr04	irgsp1_rep	mRNA	19061597	19062100	.	-	.	ID=Os04t0387600-01;Name=Os04t0387600-01;Locus_id=Os04g0387600;Note=Similar to OSIGBa0075F02.3 protein.;Transcript_evidence=AK063862 (DDBJ%2C Best hit);ORF_evidence=Q01LF6 (UniProt);InterPro=Protein of unknown function DUF3339 (IPR021775);NIAS_FLcDNA=001-122-D12;Expression=AK063862;TENOR=Os04t0387600-01;KEGG=Os04t0387600-01
Chr04	irgsp1_rep	five_prime_UTR	19062054	19062100	.	-	.	Parent=Os04t0387600-01
Chr04	irgsp1_rep	CDS	19061844	19062053	.	-	0	Parent=Os04t0387600-01
Chr04	irgsp1_rep	three_prime_UTR	19061597	19061843	.	-	.	Parent=Os04t0387600-01
Chr04	irgsp1_rep	mRNA	19080298	19081059	.	+	.	ID=Os04t0387900-01;Name=Os04t0387900-01;Locus_id=Os04g0387900;Note=Similar to AT.I.24-6 protein (Fragment).;Transcript_evidence=AK063212 (DDBJ%2C Best hit);ORF_evidence=Q01LF5 (UniProt);InterPro=Protein of unknown function DUF3339 (IPR021775);NIAS_FLcDNA=001-112-D08;Expression=AK063212;TENOR=Os04t0387900-01;KEGG=Os04t0387900-01
Chr04	irgsp1_rep	five_prime_UTR	19080298	19080510	.	+	.	Parent=Os04t0387900-01
Chr04	irgsp1_rep	CDS	19080511	19080723	.	+	0	Parent=Os04t0387900-01
Chr04	irgsp1_rep	three_prime_UTR	19080724	19081059	.	+	.	Parent=Os04t0387900-01
Chr04	irgsp1_rep	mRNA	19084460	19086478	.	+	.	ID=Os04t0388000-00;Name=Os04t0388000-00;Locus_id=Os04g0388000;Note=Similar to OSIGBa0075F02.5 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01LF4 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);TENOR=Os04t0388000-00
Chr04	irgsp1_rep	CDS	19084460	19084967	.	+	0	Parent=Os04t0388000-00
Chr04	irgsp1_rep	CDS	19084988	19085761	.	+	2	Parent=Os04t0388000-00
Chr04	irgsp1_rep	CDS	19086184	19086238	.	+	2	Parent=Os04t0388000-00
Chr04	irgsp1_rep	CDS	19086331	19086478	.	+	1	Parent=Os04t0388000-00
Chr04	irgsp1_rep	mRNA	19105902	19113568	.	+	.	ID=Os04t0388500-01;Name=Os04t0388500-01;Locus_id=Os04g0388500;Oryzabase Gene Name Synonym(s)=CaM-binding transcription factor homolog%2C OsCBT homolog%2C CBT homolog%2C calmodulin-binding transcription activator;Note=Ankyrin domain containing protein.;Transcript_evidence=AK122001 (DDBJ%2C Best hit);ORF_evidence=Q01LE4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein binding (GO:0005515),Molecular Function: calmodulin binding (GO:0005516);InterPro=IQ motif%2C EF-hand binding site (IPR000048),Ankyrin repeat (IPR002110),Cell surface receptor IPT/TIG (IPR002909),CG-1 (IPR005559),Immunoglobulin-like fold (IPR013783),Immunoglobulin E-set (IPR014756),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J033110J06;Oryzabase=19602;Expression=AK122001;TENOR=Os04t0388500-01;KEGG=Os04t0388500-01
Chr04	irgsp1_rep	five_prime_UTR	19105902	19106206	.	+	.	Parent=Os04t0388500-01
Chr04	irgsp1_rep	CDS	19106207	19106216	.	+	0	Parent=Os04t0388500-01
Chr04	irgsp1_rep	CDS	19106873	19106998	.	+	2	Parent=Os04t0388500-01
Chr04	irgsp1_rep	CDS	19107086	19107201	.	+	2	Parent=Os04t0388500-01
Chr04	irgsp1_rep	CDS	19107535	19107623	.	+	0	Parent=Os04t0388500-01
Chr04	irgsp1_rep	CDS	19107832	19107883	.	+	1	Parent=Os04t0388500-01
Chr04	irgsp1_rep	CDS	19108501	19108969	.	+	0	Parent=Os04t0388500-01
Chr04	irgsp1_rep	CDS	19109771	19109892	.	+	2	Parent=Os04t0388500-01
Chr04	irgsp1_rep	CDS	19110094	19110507	.	+	0	Parent=Os04t0388500-01
Chr04	irgsp1_rep	CDS	19110590	19111272	.	+	0	Parent=Os04t0388500-01
Chr04	irgsp1_rep	CDS	19111701	19112292	.	+	1	Parent=Os04t0388500-01
Chr04	irgsp1_rep	CDS	19112449	19112778	.	+	0	Parent=Os04t0388500-01
Chr04	irgsp1_rep	CDS	19113246	19113254	.	+	0	Parent=Os04t0388500-01
Chr04	irgsp1_rep	three_prime_UTR	19113255	19113568	.	+	.	Parent=Os04t0388500-01
Chr04	irgsp1_rep	mRNA	19113351	19116837	.	-	.	ID=Os04t0388601-00;Name=Os04t0388601-00;Locus_id=Os04g0388601;Oryzabase Gene Symbol Synonym(s)=OsMed30_1%2C Med30_1;Oryzabase Gene Name Synonym(s)=Mediator 30_1;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XKR3 (UniProt);Oryzabase=20987;TENOR=Os04t0388601-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	19116421	19116837	.	-	0	Parent=Os04t0388601-00
Chr04	irgsp1_rep	CDS	19115914	19115991	.	-	0	Parent=Os04t0388601-00
Chr04	irgsp1_rep	CDS	19113351	19113362	.	-	0	Parent=Os04t0388601-00
Chr04	irgsp1_rep	mRNA	19122564	19126984	.	+	.	ID=Os04t0388700-01;Name=Os04t0388700-01;Locus_id=Os04g0388700;Note=Similar to OSIGBa0096P03.3 protein.;Transcript_evidence=AK065710 (DDBJ%2C Best hit);ORF_evidence=Q01LE2 (UniProt);InterPro=Nodulin-like (IPR010658),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J013043L03;TENOR=Os04t0388700-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	19122564	19123268	.	+	.	Parent=Os04t0388700-01
Chr04	irgsp1_rep	CDS	19123269	19123604	.	+	0	Parent=Os04t0388700-01
Chr04	irgsp1_rep	CDS	19125004	19125929	.	+	0	Parent=Os04t0388700-01
Chr04	irgsp1_rep	CDS	19126288	19126786	.	+	1	Parent=Os04t0388700-01
Chr04	irgsp1_rep	three_prime_UTR	19126787	19126984	.	+	.	Parent=Os04t0388700-01
Chr04	irgsp1_rep	mRNA	19122644	19126984	.	+	.	ID=Os04t0388700-02;Name=Os04t0388700-02;Locus_id=Os04g0388700;Note=Similar to OSIGBa0096P03.3 protein.;Transcript_evidence=AK099040 (DDBJ%2C Best hit),AK104338 (DDBJ%2C Best hit);ORF_evidence=Q01LE2 (UniProt);InterPro=Nodulin-like (IPR010658),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J013134B17,001-033-D12;TENOR=Os04t0388700-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	19122644	19123268	.	+	.	Parent=Os04t0388700-02
Chr04	irgsp1_rep	CDS	19123269	19123604	.	+	0	Parent=Os04t0388700-02
Chr04	irgsp1_rep	CDS	19125004	19125929	.	+	0	Parent=Os04t0388700-02
Chr04	irgsp1_rep	CDS	19126288	19126786	.	+	1	Parent=Os04t0388700-02
Chr04	irgsp1_rep	three_prime_UTR	19126787	19126984	.	+	.	Parent=Os04t0388700-02
Chr04	irgsp1_rep	mRNA	19122966	19124629	.	+	.	ID=Os04t0388700-03;Name=Os04t0388700-03;Locus_id=Os04g0388700;Note=Similar to OSIGBa0096P03.3 protein.;Transcript_evidence=AK106974 (DDBJ%2C Best hit);ORF_evidence=Q01LE2 (UniProt);InterPro=Nodulin-like (IPR010658);NIAS_FLcDNA=002-119-G11;TENOR=Os04t0388700-03;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	19122966	19123268	.	+	.	Parent=Os04t0388700-03
Chr04	irgsp1_rep	CDS	19123269	19123649	.	+	0	Parent=Os04t0388700-03
Chr04	irgsp1_rep	three_prime_UTR	19123650	19124629	.	+	.	Parent=Os04t0388700-03
Chr04	irgsp1_rep	mRNA	19130571	19132906	.	+	.	ID=Os04t0388800-01;Name=Os04t0388800-01;Locus_id=Os04g0388800;Oryzabase Gene Symbol Synonym(s)=OsDjC44;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C44;Note=Molecular chaperone%2C heat shock protein%2C Hsp40%2C DnaJ domain containing protein.;Transcript_evidence=AK063403 (DDBJ%2C Best hit);ORF_evidence=Q01LE1 (UniProt);InterPro=Domain of unknown function DUF3444 (IPR024593);NIAS_FLcDNA=001-115-A05;Oryzabase=12201;Expression=AK063403;TENOR=Os04t0388800-01;KEGG=Os04t0388800-01
Chr04	irgsp1_rep	five_prime_UTR	19130571	19130571	.	+	.	Parent=Os04t0388800-01
Chr04	irgsp1_rep	CDS	19130572	19132368	.	+	0	Parent=Os04t0388800-01
Chr04	irgsp1_rep	three_prime_UTR	19132369	19132906	.	+	.	Parent=Os04t0388800-01
Chr04	irgsp1_rep	mRNA	19134370	19139579	.	-	.	ID=Os04t0388900-01;Name=Os04t0388900-01;Locus_id=Os04g0388900;Oryzabase Gene Name Synonym(s)=Sm gene%2C Sm family protein;Note=Similar to U6 snRNA-associated Sm-like protein LSm6 (Sm protein F).;Transcript_evidence=AK063224 (DDBJ%2C Best hit);ORF_evidence=Q8LCS5 (UniProt);InterPro=Like-Sm ribonucleoprotein (LSM) domain (IPR001163),Like-Sm ribonucleoprotein (LSM) domain%2C eukaryotic/archaea-type (IPR006649),Like-Sm ribonucleoprotein (LSM)-related domain (IPR010920);NIAS_FLcDNA=001-112-E09;Oryzabase=15644;Expression=AK063224;TENOR=Os04t0388900-01;KEGG=Os04t0388900-01
Chr04	irgsp1_rep	five_prime_UTR	19139525	19139579	.	-	.	Parent=Os04t0388900-01
Chr04	irgsp1_rep	CDS	19139392	19139524	.	-	0	Parent=Os04t0388900-01
Chr04	irgsp1_rep	CDS	19134749	19134862	.	-	2	Parent=Os04t0388900-01
Chr04	irgsp1_rep	CDS	19134569	19134615	.	-	2	Parent=Os04t0388900-01
Chr04	irgsp1_rep	three_prime_UTR	19134370	19134568	.	-	.	Parent=Os04t0388900-01
Chr04	irgsp1_rep	mRNA	19142084	19144072	.	-	.	ID=Os04t0389100-00;Name=Os04t0389100-00;Locus_id=Os04g0389100;Note=OSIGBa0096P03.6 protein.;Transcript_evidence=Q7XKQ8 (UniProt);ORF_evidence=Q01LD9 (UniProt);GO=Biological Process: branched chain family amino acid biosynthetic process (GO:0009082),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: acetolactate synthase activity (GO:0003984),Molecular Function: thiamine pyrophosphate binding (GO:0030976),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Thiamine pyrophosphate enzyme%2C N-terminal TPP-binding domain (IPR012001),Acetolactate synthase%2C large subunit%2C biosynthetic (IPR012846);TENOR=Os04t0389100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	19142084	19144072	.	-	0	Parent=Os04t0389100-00
Chr04	irgsp1_rep	mRNA	19148767	19152021	.	+	.	ID=Os04t0389500-01;Name=Os04t0389500-01;Locus_id=Os04g0389500;Note=Conserved hypothetical protein.;Transcript_evidence=AK070698 (DDBJ%2C Best hit);ORF_evidence=NP_001044006.1 (RefSeq);NIAS_FLcDNA=J023056L04;TENOR=Os04t0389500-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	19148767	19149173	.	+	0	Parent=Os04t0389500-01
Chr04	irgsp1_rep	CDS	19149302	19149344	.	+	1	Parent=Os04t0389500-01
Chr04	irgsp1_rep	three_prime_UTR	19149345	19149370	.	+	.	Parent=Os04t0389500-01
Chr04	irgsp1_rep	three_prime_UTR	19149471	19149564	.	+	.	Parent=Os04t0389500-01
Chr04	irgsp1_rep	three_prime_UTR	19150207	19150253	.	+	.	Parent=Os04t0389500-01
Chr04	irgsp1_rep	three_prime_UTR	19150620	19151447	.	+	.	Parent=Os04t0389500-01
Chr04	irgsp1_rep	three_prime_UTR	19151631	19152021	.	+	.	Parent=Os04t0389500-01
Chr04	irgsp1_rep	mRNA	19158605	19161780	.	+	.	ID=Os04t0389600-01;Name=Os04t0389600-01;Locus_id=Os04g0389600;Oryzabase Gene Symbol Synonym(s)=R2R3-MYB;Note=Conserved hypothetical protein.;Transcript_evidence=AK072361 (DDBJ%2C Best hit);ORF_evidence=NP_001059652.1 (RefSeq);NIAS_FLcDNA=J023063A05;Oryzabase=16297;TENOR=Os04t0389600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	19158605	19158605	.	+	.	Parent=Os04t0389600-01
Chr04	irgsp1_rep	CDS	19158606	19159039	.	+	0	Parent=Os04t0389600-01
Chr04	irgsp1_rep	CDS	19159129	19159258	.	+	1	Parent=Os04t0389600-01
Chr04	irgsp1_rep	CDS	19159418	19159513	.	+	0	Parent=Os04t0389600-01
Chr04	irgsp1_rep	three_prime_UTR	19159514	19159829	.	+	.	Parent=Os04t0389600-01
Chr04	irgsp1_rep	three_prime_UTR	19160350	19161780	.	+	.	Parent=Os04t0389600-01
Chr04	irgsp1_rep	mRNA	19169130	19171314	.	+	.	ID=Os04t0389800-01;Name=Os04t0389800-01;Locus_id=Os04g0389800;Note=Similar to OSIGBa0096P03.6 protein.;Transcript_evidence=AK109628 (DDBJ%2C Best hit);ORF_evidence=Q01LD9 (UniProt);GO=Biological Process: branched chain family amino acid biosynthetic process (GO:0009082),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: acetolactate synthase activity (GO:0003984),Molecular Function: thiamine pyrophosphate binding (GO:0030976),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Thiamine pyrophosphate enzyme%2C C-terminal TPP-binding (IPR011766),Thiamine pyrophosphate enzyme%2C central domain (IPR012000),Thiamine pyrophosphate enzyme%2C N-terminal TPP-binding domain (IPR012001),Acetolactate synthase%2C large subunit%2C biosynthetic (IPR012846);NIAS_FLcDNA=002-138-C02;TENOR=Os04t0389800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	19169130	19169190	.	+	.	Parent=Os04t0389800-01
Chr04	irgsp1_rep	CDS	19169191	19171182	.	+	0	Parent=Os04t0389800-01
Chr04	irgsp1_rep	three_prime_UTR	19171183	19171314	.	+	.	Parent=Os04t0389800-01
Chr04	irgsp1_rep	mRNA	19173457	19180916	.	-	.	ID=Os04t0389901-01;Name=Os04t0389901-01;Locus_id=Os04g0389901;Note=Hypothetical gene.;Transcript_evidence=AK289155 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090099O20;TENOR=Os04t0389901-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	19174332	19180916	.	-	.	Parent=Os04t0389901-01
Chr04	irgsp1_rep	CDS	19173636	19174331	.	-	0	Parent=Os04t0389901-01
Chr04	irgsp1_rep	three_prime_UTR	19173457	19173635	.	-	.	Parent=Os04t0389901-01
Chr04	irgsp1_rep	mRNA	19175720	19182442	.	+	.	ID=Os04t0390000-01;Name=Os04t0390000-01;Locus_id=Os04g0390000;Note=Similar to OSIGBa0096P03.7 protein.;Transcript_evidence=AK067777 (DDBJ%2C Best hit);ORF_evidence=Q01LD8 (UniProt);GO=Biological Process: tricarboxylic acid cycle (GO:0006099),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxoglutarate dehydrogenase (succinyl-transferring) activity (GO:0004591),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C disulfide as acceptor (GO:0016624),Molecular Function: thiamine pyrophosphate binding (GO:0030976);InterPro=Dehydrogenase%2C E1 component (IPR001017),Transketolase-like%2C pyrimidine-binding domain (IPR005475),2-oxoglutarate dehydrogenase%2C E1 component (IPR011603);NIAS_FLcDNA=J013116O03;TENOR=Os04t0390000-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	19175720	19175927	.	+	.	Parent=Os04t0390000-01
Chr04	irgsp1_rep	five_prime_UTR	19176365	19176475	.	+	.	Parent=Os04t0390000-01
Chr04	irgsp1_rep	CDS	19176476	19178011	.	+	0	Parent=Os04t0390000-01
Chr04	irgsp1_rep	CDS	19178407	19178633	.	+	0	Parent=Os04t0390000-01
Chr04	irgsp1_rep	CDS	19178721	19179053	.	+	1	Parent=Os04t0390000-01
Chr04	irgsp1_rep	CDS	19180025	19180271	.	+	1	Parent=Os04t0390000-01
Chr04	irgsp1_rep	CDS	19180899	19181027	.	+	0	Parent=Os04t0390000-01
Chr04	irgsp1_rep	CDS	19181110	19181325	.	+	0	Parent=Os04t0390000-01
Chr04	irgsp1_rep	CDS	19181399	19181522	.	+	0	Parent=Os04t0390000-01
Chr04	irgsp1_rep	CDS	19182000	19182238	.	+	2	Parent=Os04t0390000-01
Chr04	irgsp1_rep	three_prime_UTR	19182239	19182442	.	+	.	Parent=Os04t0390000-01
Chr04	irgsp1_rep	mRNA	19175766	19182525	.	+	.	ID=Os04t0390000-02;Name=Os04t0390000-02;Locus_id=Os04g0390000;Note=Similar to OSIGBa0096P03.7 protein.;Transcript_evidence=AK098921 (DDBJ%2C Best hit);ORF_evidence=Q01LD8 (UniProt);GO=Biological Process: tricarboxylic acid cycle (GO:0006099),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxoglutarate dehydrogenase (succinyl-transferring) activity (GO:0004591),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C disulfide as acceptor (GO:0016624),Molecular Function: thiamine pyrophosphate binding (GO:0030976);InterPro=Dehydrogenase%2C E1 component (IPR001017),Transketolase-like%2C pyrimidine-binding domain (IPR005475),2-oxoglutarate dehydrogenase%2C E1 component (IPR011603);NIAS_FLcDNA=J013002N21;TENOR=Os04t0390000-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	19175766	19175927	.	+	.	Parent=Os04t0390000-02
Chr04	irgsp1_rep	five_prime_UTR	19176365	19176475	.	+	.	Parent=Os04t0390000-02
Chr04	irgsp1_rep	CDS	19176476	19178011	.	+	0	Parent=Os04t0390000-02
Chr04	irgsp1_rep	CDS	19178407	19178633	.	+	0	Parent=Os04t0390000-02
Chr04	irgsp1_rep	CDS	19178721	19179053	.	+	1	Parent=Os04t0390000-02
Chr04	irgsp1_rep	CDS	19180025	19180271	.	+	1	Parent=Os04t0390000-02
Chr04	irgsp1_rep	CDS	19180899	19181027	.	+	0	Parent=Os04t0390000-02
Chr04	irgsp1_rep	CDS	19181110	19181325	.	+	0	Parent=Os04t0390000-02
Chr04	irgsp1_rep	CDS	19181399	19181522	.	+	0	Parent=Os04t0390000-02
Chr04	irgsp1_rep	CDS	19182000	19182238	.	+	2	Parent=Os04t0390000-02
Chr04	irgsp1_rep	three_prime_UTR	19182239	19182525	.	+	.	Parent=Os04t0390000-02
Chr04	irgsp1_rep	mRNA	19175776	19179290	.	+	.	ID=Os04t0390000-03;Name=Os04t0390000-03;Locus_id=Os04g0390000;Note=Similar to OSIGBa0096P03.7 protein.;Transcript_evidence=AK068713 (DDBJ%2C Best hit);ORF_evidence=Q01LD8 (UniProt);GO=Biological Process: tricarboxylic acid cycle (GO:0006099),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxoglutarate dehydrogenase (succinyl-transferring) activity (GO:0004591),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C disulfide as acceptor (GO:0016624),Molecular Function: thiamine pyrophosphate binding (GO:0030976);InterPro=Dehydrogenase%2C E1 component (IPR001017),Transketolase-like%2C pyrimidine-binding domain (IPR005475),2-oxoglutarate dehydrogenase%2C E1 component (IPR011603);NIAS_FLcDNA=J013161L21;TENOR=Os04t0390000-03;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	19175776	19175927	.	+	.	Parent=Os04t0390000-03
Chr04	irgsp1_rep	five_prime_UTR	19176365	19176475	.	+	.	Parent=Os04t0390000-03
Chr04	irgsp1_rep	CDS	19176476	19177323	.	+	0	Parent=Os04t0390000-03
Chr04	irgsp1_rep	CDS	19177345	19178011	.	+	1	Parent=Os04t0390000-03
Chr04	irgsp1_rep	CDS	19178407	19178633	.	+	0	Parent=Os04t0390000-03
Chr04	irgsp1_rep	CDS	19178721	19179066	.	+	1	Parent=Os04t0390000-03
Chr04	irgsp1_rep	three_prime_UTR	19179067	19179290	.	+	.	Parent=Os04t0390000-03
Chr04	irgsp1_rep	mRNA	19178720	19182478	.	+	.	ID=Os04t0390000-04;Name=Os04t0390000-04;Locus_id=Os04g0390000;Note=Similar to OSIGBa0096P03.7 protein.;Transcript_evidence=AK060837 (DDBJ%2C Best hit);ORF_evidence=Q01LD8 (UniProt);GO=Biological Process: tricarboxylic acid cycle (GO:0006099),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxoglutarate dehydrogenase (succinyl-transferring) activity (GO:0004591),Molecular Function: thiamine pyrophosphate binding (GO:0030976);InterPro=Transketolase-like%2C pyrimidine-binding domain (IPR005475),2-oxoglutarate dehydrogenase%2C E1 component (IPR011603);NIAS_FLcDNA=001-034-C11;Expression=AK060837;TENOR=Os04t0390000-04;KEGG=Os04t0390000-04 (EC:1.2.4.2)
Chr04	irgsp1_rep	five_prime_UTR	19178720	19178721	.	+	.	Parent=Os04t0390000-04
Chr04	irgsp1_rep	CDS	19178722	19179053	.	+	0	Parent=Os04t0390000-04
Chr04	irgsp1_rep	CDS	19180025	19180271	.	+	1	Parent=Os04t0390000-04
Chr04	irgsp1_rep	CDS	19180899	19181027	.	+	0	Parent=Os04t0390000-04
Chr04	irgsp1_rep	CDS	19181110	19181325	.	+	0	Parent=Os04t0390000-04
Chr04	irgsp1_rep	CDS	19181399	19181522	.	+	0	Parent=Os04t0390000-04
Chr04	irgsp1_rep	CDS	19182000	19182238	.	+	2	Parent=Os04t0390000-04
Chr04	irgsp1_rep	three_prime_UTR	19182239	19182478	.	+	.	Parent=Os04t0390000-04
Chr04	irgsp1_rep	mRNA	19189127	19192319	.	+	.	ID=Os04t0390100-01;Name=Os04t0390100-01;Locus_id=Os04g0390100;CGSNL Gene Symbol=HMP25;CGSNL Gene Name=HEAVY METAL-ASSOCIATED PROTEIN 25;Oryzabase Gene Symbol Synonym(s)=OsHMP25;Oryzabase Gene Name Synonym(s)=Heavy metal-associated protein 25;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK243360 (DDBJ%2C Best hit);ORF_evidence=Q01LD6 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);NIAS_FLcDNA=J100061I19;Oryzabase=23546;TENOR=Os04t0390100-01;KEGG=Os04t0390100-01
Chr04	irgsp1_rep	five_prime_UTR	19189127	19189187	.	+	.	Parent=Os04t0390100-01
Chr04	irgsp1_rep	CDS	19189188	19189196	.	+	0	Parent=Os04t0390100-01
Chr04	irgsp1_rep	CDS	19189301	19189580	.	+	0	Parent=Os04t0390100-01
Chr04	irgsp1_rep	CDS	19190474	19190688	.	+	2	Parent=Os04t0390100-01
Chr04	irgsp1_rep	CDS	19190848	19190935	.	+	0	Parent=Os04t0390100-01
Chr04	irgsp1_rep	CDS	19191420	19191985	.	+	2	Parent=Os04t0390100-01
Chr04	irgsp1_rep	three_prime_UTR	19191986	19192319	.	+	.	Parent=Os04t0390100-01
Chr04	irgsp1_rep	mRNA	19220804	19225311	.	+	.	ID=Os04t0390500-01;Name=Os04t0390500-01;Locus_id=Os04g0390500;CGSNL Gene Symbol=YSL6;CGSNL Gene Name=YELLOW STRIP-LIKE GENE 6;Oryzabase Gene Symbol Synonym(s)=OsYSL6%2C OsYs8;Oryzabase Gene Name Synonym(s)=rice YSL (yellow stripe-like) gene 6%2C Probable metal-nicotianamine transporter YSL6%2C Protein YELLOW STRIPE LIKE 6%2C yellow stripe 1-like transporter 6;Note=Similar to OSIGBa0132D06.2 protein.;Transcript_evidence=AK064828 (DDBJ%2C Best hit);ORF_evidence=Q01LD5 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085);InterPro=Oligopeptide transporter OPT superfamily (IPR004813);NIAS_FLcDNA=J013000F08;Oryzabase=8364;TENOR=Os04t0390500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	19220804	19220975	.	+	.	Parent=Os04t0390500-01
Chr04	irgsp1_rep	CDS	19220976	19221345	.	+	0	Parent=Os04t0390500-01
Chr04	irgsp1_rep	CDS	19222030	19222202	.	+	2	Parent=Os04t0390500-01
Chr04	irgsp1_rep	CDS	19222341	19222438	.	+	0	Parent=Os04t0390500-01
Chr04	irgsp1_rep	CDS	19223111	19223248	.	+	1	Parent=Os04t0390500-01
Chr04	irgsp1_rep	CDS	19223407	19223596	.	+	1	Parent=Os04t0390500-01
Chr04	irgsp1_rep	CDS	19224016	19224148	.	+	0	Parent=Os04t0390500-01
Chr04	irgsp1_rep	CDS	19224236	19224381	.	+	2	Parent=Os04t0390500-01
Chr04	irgsp1_rep	CDS	19224464	19224541	.	+	0	Parent=Os04t0390500-01
Chr04	irgsp1_rep	three_prime_UTR	19224542	19225311	.	+	.	Parent=Os04t0390500-01
Chr04	irgsp1_rep	mRNA	19220846	19225330	.	+	.	ID=Os04t0390500-02;Name=Os04t0390500-02;Locus_id=Os04g0390500;RAP-DB Gene Symbol Synonym(s)=OsYSL6%2C YSL6;RAP-DB Gene Name Synonym(s)=YELLOW STRIP-LIKE GENE 6%2C Yellow Stripe-Like 6;CGSNL Gene Symbol=YSL6;CGSNL Gene Name=YELLOW STRIP-LIKE GENE 6;Oryzabase Gene Symbol Synonym(s)=OsYSL6%2C OsYs8;Oryzabase Gene Name Synonym(s)=rice YSL (yellow stripe-like) gene 6%2C Probable metal-nicotianamine transporter YSL6%2C Protein YELLOW STRIPE LIKE 6%2C yellow stripe 1-like transporter 6;Note=Mn-nicotianamine transporter%2C Detoxification of excess manganese;Transcript_evidence=AK100148,AB673449;ORF_evidence=Q7XRV2,G9MB28;GO=Biological Process: transmembrane transport (GO:0055085);InterPro=Oligopeptide transporter%2C OPT superfamily (IPR004813);NIAS_FLcDNA=J023014E12;Manual Curation=May 11%2C 2017;Literature_PMID=21969384;Oryzabase=8364;Expression=AK100148;TENOR=Os04t0390500-02
Chr04	irgsp1_rep	five_prime_UTR	19220846	19220975	.	+	.	Parent=Os04t0390500-02
Chr04	irgsp1_rep	CDS	19220976	19221345	.	+	0	Parent=Os04t0390500-02
Chr04	irgsp1_rep	CDS	19222030	19222202	.	+	2	Parent=Os04t0390500-02
Chr04	irgsp1_rep	CDS	19222341	19222438	.	+	0	Parent=Os04t0390500-02
Chr04	irgsp1_rep	CDS	19223111	19223248	.	+	1	Parent=Os04t0390500-02
Chr04	irgsp1_rep	CDS	19223407	19223596	.	+	1	Parent=Os04t0390500-02
Chr04	irgsp1_rep	CDS	19224016	19224148	.	+	0	Parent=Os04t0390500-02
Chr04	irgsp1_rep	CDS	19224236	19225170	.	+	2	Parent=Os04t0390500-02
Chr04	irgsp1_rep	three_prime_UTR	19225171	19225330	.	+	.	Parent=Os04t0390500-02
Chr04	irgsp1_rep	mRNA	19220948	19225319	.	+	.	ID=Os04t0390500-03;Name=Os04t0390500-03;Locus_id=Os04g0390500;CGSNL Gene Symbol=YSL6;CGSNL Gene Name=YELLOW STRIP-LIKE GENE 6;Oryzabase Gene Symbol Synonym(s)=OsYSL6%2C OsYs8;Oryzabase Gene Name Synonym(s)=rice YSL (yellow stripe-like) gene 6%2C Probable metal-nicotianamine transporter YSL6%2C Protein YELLOW STRIPE LIKE 6%2C yellow stripe 1-like transporter 6;Note=Iron-phytosiderophore transporter protein yellow stripe 1.;Transcript_evidence=AK099908 (DDBJ%2C Best hit);ORF_evidence=Q01LD5 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085);InterPro=Oligopeptide transporter OPT superfamily (IPR004813);NIAS_FLcDNA=J013116C14;Oryzabase=8364;Expression=AK099908;TENOR=Os04t0390500-03;KEGG=Os04t0390500-03
Chr04	irgsp1_rep	five_prime_UTR	19220948	19220975	.	+	.	Parent=Os04t0390500-03
Chr04	irgsp1_rep	CDS	19220976	19221345	.	+	0	Parent=Os04t0390500-03
Chr04	irgsp1_rep	CDS	19222030	19222202	.	+	2	Parent=Os04t0390500-03
Chr04	irgsp1_rep	CDS	19222341	19222438	.	+	0	Parent=Os04t0390500-03
Chr04	irgsp1_rep	CDS	19223111	19223248	.	+	1	Parent=Os04t0390500-03
Chr04	irgsp1_rep	CDS	19223407	19223596	.	+	1	Parent=Os04t0390500-03
Chr04	irgsp1_rep	CDS	19224016	19224148	.	+	0	Parent=Os04t0390500-03
Chr04	irgsp1_rep	CDS	19224236	19225170	.	+	2	Parent=Os04t0390500-03
Chr04	irgsp1_rep	three_prime_UTR	19225171	19225319	.	+	.	Parent=Os04t0390500-03
Chr04	irgsp1_rep	mRNA	19221064	19225308	.	+	.	ID=Os04t0390500-04;Name=Os04t0390500-04;Locus_id=Os04g0390500;CGSNL Gene Symbol=YSL6;CGSNL Gene Name=YELLOW STRIP-LIKE GENE 6;Oryzabase Gene Symbol Synonym(s)=OsYSL6%2C OsYs8;Oryzabase Gene Name Synonym(s)=rice YSL (yellow stripe-like) gene 6%2C Probable metal-nicotianamine transporter YSL6%2C Protein YELLOW STRIPE LIKE 6%2C yellow stripe 1-like transporter 6;Note=Similar to OSIGBa0132D06.2 protein.;Transcript_evidence=AK066575 (DDBJ%2C Best hit);ORF_evidence=Q01LD5 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085);InterPro=Oligopeptide transporter OPT superfamily (IPR004813);NIAS_FLcDNA=J013070E15;Oryzabase=8364;Expression=AK066575;TENOR=Os04t0390500-04;KEGG=Os04t0390500-04
Chr04	irgsp1_rep	five_prime_UTR	19221064	19221065	.	+	.	Parent=Os04t0390500-04
Chr04	irgsp1_rep	CDS	19221066	19221345	.	+	0	Parent=Os04t0390500-04
Chr04	irgsp1_rep	CDS	19222030	19222202	.	+	2	Parent=Os04t0390500-04
Chr04	irgsp1_rep	CDS	19222341	19222438	.	+	0	Parent=Os04t0390500-04
Chr04	irgsp1_rep	CDS	19223111	19223248	.	+	1	Parent=Os04t0390500-04
Chr04	irgsp1_rep	CDS	19223407	19223596	.	+	1	Parent=Os04t0390500-04
Chr04	irgsp1_rep	CDS	19224016	19224148	.	+	0	Parent=Os04t0390500-04
Chr04	irgsp1_rep	CDS	19224236	19225170	.	+	2	Parent=Os04t0390500-04
Chr04	irgsp1_rep	three_prime_UTR	19225171	19225308	.	+	.	Parent=Os04t0390500-04
Chr04	irgsp1_rep	mRNA	19229851	19231750	.	+	.	ID=Os04t0390600-01;Name=Os04t0390600-01;Locus_id=Os04g0390600;CGSNL Gene Symbol=YSL5;CGSNL Gene Name=YELLOW STRIP-LIKE GENE 5;Oryzabase Gene Symbol Synonym(s)=OsYSL5%2C OsYs9;Oryzabase Gene Name Synonym(s)=rice YSL (yellow stripe-like) gene 5%2C Probable metal-nicotianamine transporter YSL5%2C Protein YELLOW STRIPE LIKE 5%2C yellow stripe 1-like transporter 5;Note=Oligopeptide transporter OPT superfamily protein.;Transcript_evidence=AK108750 (DDBJ%2C Best hit);ORF_evidence=Q01LD4 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085);InterPro=Oligopeptide transporter OPT superfamily (IPR004813);NIAS_FLcDNA=002-150-F05;Oryzabase=8363;Expression=AK108750;TENOR=Os04t0390600-01;KEGG=Os04t0390600-01
Chr04	irgsp1_rep	five_prime_UTR	19229851	19229851	.	+	.	Parent=Os04t0390600-01
Chr04	irgsp1_rep	CDS	19229852	19230040	.	+	0	Parent=Os04t0390600-01
Chr04	irgsp1_rep	CDS	19230316	19230448	.	+	0	Parent=Os04t0390600-01
Chr04	irgsp1_rep	CDS	19230646	19231583	.	+	2	Parent=Os04t0390600-01
Chr04	irgsp1_rep	three_prime_UTR	19231584	19231750	.	+	.	Parent=Os04t0390600-01
Chr04	irgsp1_rep	mRNA	19233125	19235143	.	+	.	ID=Os04t0390700-01;Name=Os04t0390700-01;Locus_id=Os04g0390700;Oryzabase Gene Symbol Synonym(s)=OsEnS-62;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 62;Note=Short-chain dehydrogenase/reductase SDR domain containing protein.;Transcript_evidence=AK107261 (DDBJ%2C Best hit);ORF_evidence=Q01LD3 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);NIAS_FLcDNA=002-125-H01;Oryzabase=18385;Expression=AK107261;TENOR=Os04t0390700-01;KEGG=Os04t0390700-01
Chr04	irgsp1_rep	five_prime_UTR	19233125	19233229	.	+	.	Parent=Os04t0390700-01
Chr04	irgsp1_rep	CDS	19233230	19233662	.	+	0	Parent=Os04t0390700-01
Chr04	irgsp1_rep	CDS	19233779	19233864	.	+	2	Parent=Os04t0390700-01
Chr04	irgsp1_rep	CDS	19234231	19234362	.	+	0	Parent=Os04t0390700-01
Chr04	irgsp1_rep	CDS	19234476	19234640	.	+	0	Parent=Os04t0390700-01
Chr04	irgsp1_rep	CDS	19234743	19235033	.	+	0	Parent=Os04t0390700-01
Chr04	irgsp1_rep	three_prime_UTR	19235034	19235143	.	+	.	Parent=Os04t0390700-01
Chr04	irgsp1_rep	mRNA	19236654	19239026	.	+	.	ID=Os04t0390800-01;Name=Os04t0390800-01;Locus_id=Os04g0390800;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK108276 (DDBJ%2C Best hit);ORF_evidence=Q01LD2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);NIAS_FLcDNA=002-141-C08;Expression=AK108276;TENOR=Os04t0390800-01;KEGG=Os04t0390800-01
Chr04	irgsp1_rep	CDS	19236654	19236866	.	+	0	Parent=Os04t0390800-01
Chr04	irgsp1_rep	CDS	19236951	19237143	.	+	0	Parent=Os04t0390800-01
Chr04	irgsp1_rep	CDS	19237288	19237373	.	+	2	Parent=Os04t0390800-01
Chr04	irgsp1_rep	CDS	19237536	19237667	.	+	0	Parent=Os04t0390800-01
Chr04	irgsp1_rep	CDS	19238004	19238171	.	+	0	Parent=Os04t0390800-01
Chr04	irgsp1_rep	CDS	19238588	19238881	.	+	0	Parent=Os04t0390800-01
Chr04	irgsp1_rep	three_prime_UTR	19238882	19239026	.	+	.	Parent=Os04t0390800-01
Chr04	irgsp1_rep	mRNA	19240745	19245988	.	-	.	ID=Os04t0391000-00;Name=Os04t0391000-00;Locus_id=Os04g0391000;Oryzabase Gene Name Synonym(s)=RMI1 homolog;Note=Similar to OSIGBa0132D06.6 protein.;Transcript_evidence=BT042334 (DDBJ);ORF_evidence=NP_001141938.1 (RefSeq);InterPro=Domain of unknown function DUF1767 (IPR013894);Oryzabase=20421;TENOR=Os04t0391000-00;KEGG=Os04t0391000-00
Chr04	irgsp1_rep	five_prime_UTR	19245972	19245988	.	-	.	Parent=Os04t0391000-00
Chr04	irgsp1_rep	CDS	19245714	19245971	.	-	0	Parent=Os04t0391000-00
Chr04	irgsp1_rep	CDS	19245120	19245644	.	-	0	Parent=Os04t0391000-00
Chr04	irgsp1_rep	CDS	19244309	19244479	.	-	0	Parent=Os04t0391000-00
Chr04	irgsp1_rep	CDS	19243738	19243883	.	-	0	Parent=Os04t0391000-00
Chr04	irgsp1_rep	CDS	19243166	19243310	.	-	1	Parent=Os04t0391000-00
Chr04	irgsp1_rep	three_prime_UTR	19243146	19243165	.	-	.	Parent=Os04t0391000-00
Chr04	irgsp1_rep	three_prime_UTR	19242364	19242597	.	-	.	Parent=Os04t0391000-00
Chr04	irgsp1_rep	three_prime_UTR	19242074	19242239	.	-	.	Parent=Os04t0391000-00
Chr04	irgsp1_rep	three_prime_UTR	19241749	19241859	.	-	.	Parent=Os04t0391000-00
Chr04	irgsp1_rep	three_prime_UTR	19241520	19241645	.	-	.	Parent=Os04t0391000-00
Chr04	irgsp1_rep	three_prime_UTR	19240745	19240924	.	-	.	Parent=Os04t0391000-00
Chr04	irgsp1_rep	mRNA	19247301	19247369	.	+	.	ID=Os04t0391250-00;Name=Os04t0391250-00;Locus_id=Os04g0391250;Note=Non-protein coding transcript.;Transcript_evidence=X06283 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0391250-00
Chr04	irgsp1_rep	exon	19247301	19247369	.	+	.	Parent=Os04t0391250-00
Chr04	irgsp1_rep	mRNA	19269218	19271304	.	+	.	ID=Os04t0391500-01;Name=Os04t0391500-01;Locus_id=Os04g0391500;CGSNL Gene Symbol=ACR6;CGSNL Gene Name=ACT DOMAIN REPEAT PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsACR6;Oryzabase Gene Name Synonym(s)=ACT-domain repeat protein 6;Note=Similar to ACR4.;Transcript_evidence=AK067296 (DDBJ%2C Best hit);ORF_evidence=Q01LC6 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: amino acid binding (GO:0016597);InterPro=Amino acid-binding ACT (IPR002912);NIAS_FLcDNA=J013102O07;Oryzabase=7256;Expression=AK067296;TENOR=Os04t0391500-01;KEGG=Os04t0391500-01
Chr04	irgsp1_rep	five_prime_UTR	19269218	19269407	.	+	.	Parent=Os04t0391500-01
Chr04	irgsp1_rep	CDS	19269408	19269654	.	+	0	Parent=Os04t0391500-01
Chr04	irgsp1_rep	CDS	19269727	19269794	.	+	2	Parent=Os04t0391500-01
Chr04	irgsp1_rep	CDS	19269880	19270977	.	+	0	Parent=Os04t0391500-01
Chr04	irgsp1_rep	three_prime_UTR	19270978	19271304	.	+	.	Parent=Os04t0391500-01
Chr04	irgsp1_rep	mRNA	19269285	19271109	.	+	.	ID=Os04t0391500-02;Name=Os04t0391500-02;Locus_id=Os04g0391500;CGSNL Gene Symbol=ACR6;CGSNL Gene Name=ACT DOMAIN REPEAT PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsACR6;Oryzabase Gene Name Synonym(s)=ACT-domain repeat protein 6;Note=Similar to OSIGBa0145N07.1 protein.;Transcript_evidence=AK072197 (DDBJ%2C Best hit);ORF_evidence=Q01LC6 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: amino acid binding (GO:0016597);InterPro=Amino acid-binding ACT (IPR002912);NIAS_FLcDNA=J013160N15;Oryzabase=7256;Expression=AK072197;TENOR=Os04t0391500-02;KEGG=Os04t0391500-02
Chr04	irgsp1_rep	five_prime_UTR	19269285	19269407	.	+	.	Parent=Os04t0391500-02
Chr04	irgsp1_rep	CDS	19269408	19269654	.	+	0	Parent=Os04t0391500-02
Chr04	irgsp1_rep	CDS	19269727	19269836	.	+	2	Parent=Os04t0391500-02
Chr04	irgsp1_rep	three_prime_UTR	19269837	19271109	.	+	.	Parent=Os04t0391500-02
Chr04	irgsp1_rep	mRNA	19283338	19286818	.	+	.	ID=Os04t0391900-01;Name=Os04t0391900-01;Locus_id=Os04g0391900;Note=Similar to OSIGBa0145N07.5 protein.;Transcript_evidence=AK101777 (DDBJ%2C Best hit);ORF_evidence=Q01LC2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Amidohydrolase 2 (IPR006992);NIAS_FLcDNA=J033064N18;TENOR=Os04t0391900-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	19283338	19283338	.	+	.	Parent=Os04t0391900-01
Chr04	irgsp1_rep	CDS	19283339	19283629	.	+	0	Parent=Os04t0391900-01
Chr04	irgsp1_rep	CDS	19283723	19283794	.	+	0	Parent=Os04t0391900-01
Chr04	irgsp1_rep	CDS	19284234	19284313	.	+	0	Parent=Os04t0391900-01
Chr04	irgsp1_rep	CDS	19284464	19284563	.	+	1	Parent=Os04t0391900-01
Chr04	irgsp1_rep	CDS	19284645	19284698	.	+	0	Parent=Os04t0391900-01
Chr04	irgsp1_rep	CDS	19284808	19284885	.	+	0	Parent=Os04t0391900-01
Chr04	irgsp1_rep	CDS	19285418	19285515	.	+	0	Parent=Os04t0391900-01
Chr04	irgsp1_rep	CDS	19285613	19285670	.	+	1	Parent=Os04t0391900-01
Chr04	irgsp1_rep	CDS	19286097	19286218	.	+	0	Parent=Os04t0391900-01
Chr04	irgsp1_rep	CDS	19286485	19286641	.	+	1	Parent=Os04t0391900-01
Chr04	irgsp1_rep	three_prime_UTR	19286642	19286818	.	+	.	Parent=Os04t0391900-01
Chr04	irgsp1_rep	mRNA	19284838	19286824	.	+	.	ID=Os04t0391900-02;Name=Os04t0391900-02;Locus_id=Os04g0391900;Note=Similar to OSIGBa0145N07.5 protein.;Transcript_evidence=AK058653 (DDBJ%2C Best hit);ORF_evidence=Q01LC2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Amidohydrolase 2 (IPR006992);NIAS_FLcDNA=001-018-F04;Expression=AK058653;TENOR=Os04t0391900-02;KEGG=Os04t0391900-02
Chr04	irgsp1_rep	CDS	19284838	19284885	.	+	0	Parent=Os04t0391900-02
Chr04	irgsp1_rep	CDS	19285418	19285515	.	+	0	Parent=Os04t0391900-02
Chr04	irgsp1_rep	CDS	19285613	19285670	.	+	1	Parent=Os04t0391900-02
Chr04	irgsp1_rep	CDS	19286097	19286218	.	+	0	Parent=Os04t0391900-02
Chr04	irgsp1_rep	CDS	19286485	19286641	.	+	1	Parent=Os04t0391900-02
Chr04	irgsp1_rep	three_prime_UTR	19286642	19286824	.	+	.	Parent=Os04t0391900-02
Chr04	irgsp1_rep	mRNA	19300027	19301775	.	+	.	ID=Os04t0392300-00;Name=Os04t0392300-00;Locus_id=Os04g0392300;Oryzabase Gene Symbol Synonym(s)=OsSTA122;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A3ATB4 (UniProt);Oryzabase=19412;TENOR=Os04t0392300-00;KEGG=Os04t0392300-00
Chr04	irgsp1_rep	CDS	19300027	19300745	.	+	0	Parent=Os04t0392300-00
Chr04	irgsp1_rep	CDS	19301562	19301775	.	+	1	Parent=Os04t0392300-00
Chr04	irgsp1_rep	mRNA	19306352	19308098	.	+	.	ID=Os04t0392500-00;Name=Os04t0392500-00;Locus_id=Os04g0392500;Oryzabase Gene Symbol Synonym(s)=OsSTA123;Note=Similar to OSIGBa0145N07.7 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01LC0 (UniProt);Oryzabase=19413;TENOR=Os04t0392500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	19306352	19307034	.	+	0	Parent=Os04t0392500-00
Chr04	irgsp1_rep	CDS	19308074	19308098	.	+	1	Parent=Os04t0392500-00
Chr04	irgsp1_rep	mRNA	19294213	19297273	.	-	.	ID=Os04t0392700-01;Name=Os04t0392700-01;Locus_id=Os04g0392700;Note=Hypothetical conserved gene.;Transcript_evidence=AK241741 (DDBJ%2C Best hit);ORF_evidence=B9FEX2 (UniProt);NIAS_FLcDNA=J065201L01;TENOR=Os04t0392700-01;KEGG=Os04t0392700-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	19296901	19297273	.	-	.	Parent=Os04t0392700-01
Chr04	irgsp1_rep	five_prime_UTR	19296806	19296809	.	-	.	Parent=Os04t0392700-01
Chr04	irgsp1_rep	CDS	19296757	19296805	.	-	0	Parent=Os04t0392700-01
Chr04	irgsp1_rep	CDS	19295413	19295444	.	-	2	Parent=Os04t0392700-01
Chr04	irgsp1_rep	CDS	19294477	19294599	.	-	0	Parent=Os04t0392700-01
Chr04	irgsp1_rep	three_prime_UTR	19294213	19294476	.	-	.	Parent=Os04t0392700-01
Chr04	irgsp1_rep	mRNA	19323481	19327151	.	+	.	ID=Os04t0393100-00;Name=Os04t0393100-00;Locus_id=Os04g0393100;Note=Similar to OSIGBa0145N07.8 protein.;Transcript_evidence=EU972660 (DDBJ);ORF_evidence=Q01LB9 (UniProt);TENOR=Os04t0393100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	19323481	19323833	.	+	0	Parent=Os04t0393100-00
Chr04	irgsp1_rep	CDS	19326464	19327151	.	+	1	Parent=Os04t0393100-00
Chr04	irgsp1_rep	mRNA	19329087	19332227	.	+	.	ID=Os04t0393200-00;Name=Os04t0393200-00;Locus_id=Os04g0393200;Note=Similar to OSIGBa0145N07.9 protein.;Transcript_evidence=EU972660 (DDBJ);ORF_evidence=Q01LB8 (UniProt);InterPro=Twin-arginine translocation pathway%2C signal sequence (IPR006311);TENOR=Os04t0393200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	19329087	19329454	.	+	0	Parent=Os04t0393200-00
Chr04	irgsp1_rep	CDS	19331687	19332227	.	+	1	Parent=Os04t0393200-00
Chr04	irgsp1_rep	mRNA	19334558	19338593	.	-	.	ID=Os04t0393300-01;Name=Os04t0393300-01;Locus_id=Os04g0393300;Note=Membrane-anchored ubiquitin-fold protein%2C HCG-1 domain containing protein.;Transcript_evidence=AK104201 (DDBJ%2C Best hit),AK059881 (DDBJ%2C Best hit),AK099168 (DDBJ%2C Best hit);ORF_evidence=Q01LB5 (UniProt);InterPro=Membrane-anchored ubiquitin-fold protein%2C HCG-1 (IPR017000);NIAS_FLcDNA=006-304-B05,006-207-H11,J023083L04;Expression=AK104201;TENOR=Os04t0393300-01;KEGG=Os04t0393300-01
Chr04	irgsp1_rep	five_prime_UTR	19338379	19338593	.	-	.	Parent=Os04t0393300-01
Chr04	irgsp1_rep	CDS	19338198	19338378	.	-	0	Parent=Os04t0393300-01
Chr04	irgsp1_rep	CDS	19336638	19336808	.	-	2	Parent=Os04t0393300-01
Chr04	irgsp1_rep	CDS	19334850	19334905	.	-	2	Parent=Os04t0393300-01
Chr04	irgsp1_rep	three_prime_UTR	19334558	19334849	.	-	.	Parent=Os04t0393300-01
Chr04	irgsp1_rep	mRNA	19336018	19338592	.	-	.	ID=Os04t0393300-03;Name=Os04t0393300-03;Locus_id=Os04g0393300;Note=Similar to OSIGBa0145N07.12 protein.;Transcript_evidence=AK061405 (DDBJ%2C Best hit);ORF_evidence=Q01LB5 (UniProt);InterPro=Membrane-anchored ubiquitin-fold protein%2C HCG-1 (IPR017000);NIAS_FLcDNA=006-306-A03;Expression=AK061405;TENOR=Os04t0393300-03;KEGG=Os04t0393300-03
Chr04	irgsp1_rep	five_prime_UTR	19338379	19338592	.	-	.	Parent=Os04t0393300-03
Chr04	irgsp1_rep	CDS	19338198	19338378	.	-	0	Parent=Os04t0393300-03
Chr04	irgsp1_rep	CDS	19336591	19336808	.	-	2	Parent=Os04t0393300-03
Chr04	irgsp1_rep	three_prime_UTR	19336018	19336590	.	-	.	Parent=Os04t0393300-03
Chr04	irgsp1_rep	mRNA	19356400	19356807	.	+	.	ID=Os04t0393500-01;Name=Os04t0393500-01;Locus_id=Os04g0393500;RAP-DB Gene Symbol Synonym(s)=GRX13%2C OsGRX13%2C OsROXY1;RAP-DB Gene Name Synonym(s)=GLUTAREDOXIN 13%2C glutaredoxin 13;CGSNL Gene Symbol=GRX13;CGSNL Gene Name=GLUTAREDOXIN 13;Oryzabase Gene Symbol Synonym(s)=OsGRX13%2C OsROXY1;Oryzabase Gene Name Synonym(s)=glutaredoxin 13;Note=CC-type glutaredoxin%2C Floral organ development and pathogen response;Transcript_evidence=FJ463033;ORF_evidence=Q0JDM4;GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin-like%2C plant II (IPR011905),Thioredoxin-like fold (IPR012336),Glutaredoxin (IPR002109);Manual Curation=December 9%2C 2016;Literature_PMID=19825617;Oryzabase=13569;TENOR=Os04t0393500-00
Chr04	irgsp1_rep	CDS	19356400	19356807	.	+	0	Parent=Os04t0393500-01
Chr04	irgsp1_rep	mRNA	19365855	19371100	.	+	.	ID=Os04t0393900-01;Name=Os04t0393900-01;Locus_id=Os04g0393900;CGSNL Gene Symbol=RLCK149;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 149;Oryzabase Gene Symbol Synonym(s)=OsRLCK149;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 149;Note=Similar to H0718E12.2 protein.;Transcript_evidence=AK063305 (DDBJ%2C Best hit);ORF_evidence=Q01LB3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-113-F09;Oryzabase=18852;TENOR=Os04t0393900-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	19365855	19366183	.	+	.	Parent=Os04t0393900-01
Chr04	irgsp1_rep	CDS	19366184	19366301	.	+	0	Parent=Os04t0393900-01
Chr04	irgsp1_rep	CDS	19366782	19366978	.	+	2	Parent=Os04t0393900-01
Chr04	irgsp1_rep	CDS	19367404	19367593	.	+	0	Parent=Os04t0393900-01
Chr04	irgsp1_rep	CDS	19369408	19369799	.	+	2	Parent=Os04t0393900-01
Chr04	irgsp1_rep	CDS	19370304	19370771	.	+	0	Parent=Os04t0393900-01
Chr04	irgsp1_rep	three_prime_UTR	19370772	19371100	.	+	.	Parent=Os04t0393900-01
Chr04	irgsp1_rep	mRNA	19366089	19366322	.	-	.	ID=Os04t0393950-00;Name=Os04t0393950-00;Locus_id=Os04g0393950;Note=Hypothetical protein.;Transcript_evidence=EU962143 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0393950-00
Chr04	irgsp1_rep	five_prime_UTR	19366321	19366322	.	-	.	Parent=Os04t0393950-00
Chr04	irgsp1_rep	CDS	19366089	19366320	.	-	0	Parent=Os04t0393950-00
Chr04	irgsp1_rep	mRNA	19373688	19376820	.	+	.	ID=Os04t0394100-00;Name=Os04t0394100-00;Locus_id=Os04g0394100;Note=Similar to H0718E12.3 protein.;Transcript_evidence=AK365887 (DDBJ);ORF_evidence=Q01LB2 (UniProt);GO=Biological Process: glycerol metabolic process (GO:0006071),Biological Process: lipid metabolic process (GO:0006629),Molecular Function: phosphoric diester hydrolase activity (GO:0008081),Molecular Function: glycerophosphodiester phosphodiesterase activity (GO:0008889);InterPro=Glycerophosphoryl diester phosphodiesterase (IPR004129),PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain (IPR017946);TENOR=Os04t0394100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	19373688	19373688	.	+	.	Parent=Os04t0394100-00
Chr04	irgsp1_rep	CDS	19373689	19373799	.	+	0	Parent=Os04t0394100-00
Chr04	irgsp1_rep	CDS	19373878	19374067	.	+	0	Parent=Os04t0394100-00
Chr04	irgsp1_rep	CDS	19374841	19374900	.	+	2	Parent=Os04t0394100-00
Chr04	irgsp1_rep	CDS	19375071	19375151	.	+	2	Parent=Os04t0394100-00
Chr04	irgsp1_rep	CDS	19375271	19375494	.	+	2	Parent=Os04t0394100-00
Chr04	irgsp1_rep	CDS	19375692	19375766	.	+	0	Parent=Os04t0394100-00
Chr04	irgsp1_rep	CDS	19376236	19376432	.	+	0	Parent=Os04t0394100-00
Chr04	irgsp1_rep	CDS	19376535	19376814	.	+	1	Parent=Os04t0394100-00
Chr04	irgsp1_rep	three_prime_UTR	19376815	19376820	.	+	.	Parent=Os04t0394100-00
Chr04	irgsp1_rep	mRNA	19378313	19382688	.	+	.	ID=Os04t0394200-01;Name=Os04t0394200-01;Locus_id=Os04g0394200;Note=Similar to 2-oxoglutarate dehydrogenase E2 subunit.;Transcript_evidence=AK068154 (DDBJ%2C Best hit);ORF_evidence=Q01LB1 (UniProt);GO=Biological Process: tricarboxylic acid cycle (GO:0006099),Biological Process: metabolic process (GO:0008152),Cellular Component: oxoglutarate dehydrogenase complex (GO:0045252),Molecular Function: dihydrolipoyllysine-residue succinyltransferase activity (GO:0004149),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Biotin/lipoyl attachment (IPR000089),2-oxoacid dehydrogenase acyltransferase%2C catalytic domain (IPR001078),2-oxo acid dehydrogenase%2C lipoyl-binding site (IPR003016),Dihydrolipoamide succinyltransferase (IPR006255),Single hybrid motif (IPR011053),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J013130A17;Expression=AK068154;TENOR=Os04t0394200-01;KEGG=Os04t0394200-01 (EC:2.3.1.61)
Chr04	irgsp1_rep	five_prime_UTR	19378313	19378481	.	+	.	Parent=Os04t0394200-01
Chr04	irgsp1_rep	CDS	19378482	19378526	.	+	0	Parent=Os04t0394200-01
Chr04	irgsp1_rep	CDS	19379731	19379788	.	+	0	Parent=Os04t0394200-01
Chr04	irgsp1_rep	CDS	19379865	19379904	.	+	2	Parent=Os04t0394200-01
Chr04	irgsp1_rep	CDS	19380004	19380071	.	+	1	Parent=Os04t0394200-01
Chr04	irgsp1_rep	CDS	19380152	19380226	.	+	2	Parent=Os04t0394200-01
Chr04	irgsp1_rep	CDS	19380306	19380361	.	+	2	Parent=Os04t0394200-01
Chr04	irgsp1_rep	CDS	19380462	19380506	.	+	0	Parent=Os04t0394200-01
Chr04	irgsp1_rep	CDS	19380595	19380846	.	+	0	Parent=Os04t0394200-01
Chr04	irgsp1_rep	CDS	19380932	19381026	.	+	0	Parent=Os04t0394200-01
Chr04	irgsp1_rep	CDS	19381540	19381630	.	+	1	Parent=Os04t0394200-01
Chr04	irgsp1_rep	CDS	19381723	19381833	.	+	0	Parent=Os04t0394200-01
Chr04	irgsp1_rep	CDS	19381933	19382127	.	+	0	Parent=Os04t0394200-01
Chr04	irgsp1_rep	CDS	19382216	19382407	.	+	0	Parent=Os04t0394200-01
Chr04	irgsp1_rep	three_prime_UTR	19382408	19382688	.	+	.	Parent=Os04t0394200-01
Chr04	irgsp1_rep	mRNA	19378339	19382689	.	+	.	ID=Os04t0394200-02;Name=Os04t0394200-02;Locus_id=Os04g0394200;Note=Similar to 2-oxoglutarate dehydrogenase E2 subunit.;Transcript_evidence=AK104832 (DDBJ%2C Best hit);ORF_evidence=Q01LB1 (UniProt);GO=Biological Process: tricarboxylic acid cycle (GO:0006099),Biological Process: metabolic process (GO:0008152),Cellular Component: oxoglutarate dehydrogenase complex (GO:0045252),Molecular Function: dihydrolipoyllysine-residue succinyltransferase activity (GO:0004149),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Biotin/lipoyl attachment (IPR000089),2-oxoacid dehydrogenase acyltransferase%2C catalytic domain (IPR001078),2-oxo acid dehydrogenase%2C lipoyl-binding site (IPR003016),Dihydrolipoamide succinyltransferase (IPR006255),Single hybrid motif (IPR011053),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=001-042-A09;Expression=AK104832;TENOR=Os04t0394200-02;KEGG=Os04t0394200-02 (EC:2.3.1.61)
Chr04	irgsp1_rep	five_prime_UTR	19378339	19378481	.	+	.	Parent=Os04t0394200-02
Chr04	irgsp1_rep	CDS	19378482	19378526	.	+	0	Parent=Os04t0394200-02
Chr04	irgsp1_rep	CDS	19379731	19379788	.	+	0	Parent=Os04t0394200-02
Chr04	irgsp1_rep	CDS	19379865	19379904	.	+	2	Parent=Os04t0394200-02
Chr04	irgsp1_rep	CDS	19380004	19380071	.	+	1	Parent=Os04t0394200-02
Chr04	irgsp1_rep	CDS	19380152	19380226	.	+	2	Parent=Os04t0394200-02
Chr04	irgsp1_rep	CDS	19380306	19380361	.	+	2	Parent=Os04t0394200-02
Chr04	irgsp1_rep	CDS	19380462	19380506	.	+	0	Parent=Os04t0394200-02
Chr04	irgsp1_rep	CDS	19380595	19380846	.	+	0	Parent=Os04t0394200-02
Chr04	irgsp1_rep	CDS	19380932	19381026	.	+	0	Parent=Os04t0394200-02
Chr04	irgsp1_rep	CDS	19381540	19381630	.	+	1	Parent=Os04t0394200-02
Chr04	irgsp1_rep	CDS	19381723	19381833	.	+	0	Parent=Os04t0394200-02
Chr04	irgsp1_rep	CDS	19381933	19382127	.	+	0	Parent=Os04t0394200-02
Chr04	irgsp1_rep	CDS	19382216	19382407	.	+	0	Parent=Os04t0394200-02
Chr04	irgsp1_rep	three_prime_UTR	19382408	19382689	.	+	.	Parent=Os04t0394200-02
Chr04	irgsp1_rep	mRNA	19378392	19382689	.	+	.	ID=Os04t0394200-03;Name=Os04t0394200-03;Locus_id=Os04g0394200;Note=Similar to 2-oxoglutarate dehydrogenase E2 subunit.;Transcript_evidence=AK121002 (DDBJ%2C Best hit);ORF_evidence=Q01LB1 (UniProt);GO=Biological Process: tricarboxylic acid cycle (GO:0006099),Biological Process: metabolic process (GO:0008152),Cellular Component: oxoglutarate dehydrogenase complex (GO:0045252),Molecular Function: dihydrolipoyllysine-residue succinyltransferase activity (GO:0004149),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Biotin/lipoyl attachment (IPR000089),2-oxoacid dehydrogenase acyltransferase%2C catalytic domain (IPR001078),2-oxo acid dehydrogenase%2C lipoyl-binding site (IPR003016),Dihydrolipoamide succinyltransferase (IPR006255),Single hybrid motif (IPR011053),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J023045A15;Expression=AK121002;TENOR=Os04t0394200-03;KEGG=Os04t0394200-03 (EC:2.3.1.61)
Chr04	irgsp1_rep	five_prime_UTR	19378392	19378481	.	+	.	Parent=Os04t0394200-03
Chr04	irgsp1_rep	CDS	19378482	19378526	.	+	0	Parent=Os04t0394200-03
Chr04	irgsp1_rep	CDS	19379731	19379788	.	+	0	Parent=Os04t0394200-03
Chr04	irgsp1_rep	CDS	19379865	19379904	.	+	2	Parent=Os04t0394200-03
Chr04	irgsp1_rep	CDS	19380004	19380071	.	+	1	Parent=Os04t0394200-03
Chr04	irgsp1_rep	CDS	19380152	19380226	.	+	2	Parent=Os04t0394200-03
Chr04	irgsp1_rep	CDS	19380306	19380361	.	+	2	Parent=Os04t0394200-03
Chr04	irgsp1_rep	CDS	19380462	19380506	.	+	0	Parent=Os04t0394200-03
Chr04	irgsp1_rep	CDS	19380595	19380846	.	+	0	Parent=Os04t0394200-03
Chr04	irgsp1_rep	CDS	19380932	19381026	.	+	0	Parent=Os04t0394200-03
Chr04	irgsp1_rep	CDS	19381540	19381630	.	+	1	Parent=Os04t0394200-03
Chr04	irgsp1_rep	CDS	19381723	19381833	.	+	0	Parent=Os04t0394200-03
Chr04	irgsp1_rep	CDS	19381933	19382127	.	+	0	Parent=Os04t0394200-03
Chr04	irgsp1_rep	CDS	19382216	19382407	.	+	0	Parent=Os04t0394200-03
Chr04	irgsp1_rep	three_prime_UTR	19382408	19382689	.	+	.	Parent=Os04t0394200-03
Chr04	irgsp1_rep	mRNA	19379731	19382689	.	-	.	ID=Os04t0394250-00;Name=Os04t0394250-00;Locus_id=Os04g0394250;Note=Hypothetical gene.;Transcript_evidence=BT019313 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0394250-00;KEGG=Os04t0394250-00
Chr04	irgsp1_rep	five_prime_UTR	19382237	19382689	.	-	.	Parent=Os04t0394250-00
Chr04	irgsp1_rep	five_prime_UTR	19381920	19382147	.	-	.	Parent=Os04t0394250-00
Chr04	irgsp1_rep	five_prime_UTR	19381739	19381825	.	-	.	Parent=Os04t0394250-00
Chr04	irgsp1_rep	five_prime_UTR	19381540	19381650	.	-	.	Parent=Os04t0394250-00
Chr04	irgsp1_rep	CDS	19380928	19381026	.	-	0	Parent=Os04t0394250-00
Chr04	irgsp1_rep	CDS	19380593	19380842	.	-	0	Parent=Os04t0394250-00
Chr04	irgsp1_rep	CDS	19380368	19380402	.	-	2	Parent=Os04t0394250-00
Chr04	irgsp1_rep	three_prime_UTR	19380291	19380367	.	-	.	Parent=Os04t0394250-00
Chr04	irgsp1_rep	three_prime_UTR	19380157	19380215	.	-	.	Parent=Os04t0394250-00
Chr04	irgsp1_rep	three_prime_UTR	19379972	19380076	.	-	.	Parent=Os04t0394250-00
Chr04	irgsp1_rep	three_prime_UTR	19379731	19379806	.	-	.	Parent=Os04t0394250-00
Chr04	irgsp1_rep	mRNA	19383372	19391614	.	-	.	ID=Os04t0394300-01;Name=Os04t0394300-01;Locus_id=Os04g0394300;CGSNL Gene Symbol=C3H27;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 27;Oryzabase Gene Symbol Synonym(s)=OsC3H27;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 27;Note=Similar to H0718E12.5 protein.;Transcript_evidence=AK111819 (DDBJ%2C Best hit);ORF_evidence=Q01LB0 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA recognition motif domain (IPR000504),Zinc finger%2C CCCH-type (IPR000571),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023009A16;Oryzabase=8591;TENOR=Os04t0394300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	19391425	19391614	.	-	.	Parent=Os04t0394300-01
Chr04	irgsp1_rep	five_prime_UTR	19390001	19390082	.	-	.	Parent=Os04t0394300-01
Chr04	irgsp1_rep	CDS	19389218	19390000	.	-	0	Parent=Os04t0394300-01
Chr04	irgsp1_rep	CDS	19387569	19388714	.	-	0	Parent=Os04t0394300-01
Chr04	irgsp1_rep	CDS	19387000	19387320	.	-	0	Parent=Os04t0394300-01
Chr04	irgsp1_rep	CDS	19385291	19385752	.	-	0	Parent=Os04t0394300-01
Chr04	irgsp1_rep	three_prime_UTR	19385290	19385290	.	-	.	Parent=Os04t0394300-01
Chr04	irgsp1_rep	three_prime_UTR	19383372	19384147	.	-	.	Parent=Os04t0394300-01
Chr04	irgsp1_rep	mRNA	19398838	19401348	.	-	.	ID=Os04t0394500-00;Name=Os04t0394500-00;Locus_id=Os04g0394500;CGSNL Gene Symbol=DGS1;CGSNL Gene Name=DUPLICATED GAMETOPHYTIC STERILITY 1;Oryzabase Gene Symbol Synonym(s)=OsRPC53%2C RPC53%2C OsRPC4%2C RPC4%2C OsDGS1;Oryzabase Gene Name Synonym(s)=RPC53 of Pol III complex%2C RPC53 of RNA polymerase III%2C DNA-dependent RNA polymerase (RNAP) III subunit C4%2C RNA polymerase III subunit C53;Note=Similar to H0718E12.6 protein.;Transcript_evidence=AK249235 (DDBJ);ORF_evidence=Q01LA8 (UniProt);GO=Biological Process: transcription from RNA polymerase III promoter (GO:0006383),Cellular Component: DNA-directed RNA polymerase III complex (GO:0005666),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899);InterPro=RNA polymerase III Rpc4 (IPR007811);Oryzabase=18689;TENOR=Os04t0394500-00;KEGG=Os04t0394500-00 (EC:2.7.7.6)
Chr04	irgsp1_rep	CDS	19401257	19401348	.	-	0	Parent=Os04t0394500-00
Chr04	irgsp1_rep	CDS	19401070	19401139	.	-	1	Parent=Os04t0394500-00
Chr04	irgsp1_rep	CDS	19400917	19400959	.	-	0	Parent=Os04t0394500-00
Chr04	irgsp1_rep	CDS	19400095	19400169	.	-	2	Parent=Os04t0394500-00
Chr04	irgsp1_rep	CDS	19399836	19399870	.	-	2	Parent=Os04t0394500-00
Chr04	irgsp1_rep	CDS	19399696	19399759	.	-	0	Parent=Os04t0394500-00
Chr04	irgsp1_rep	CDS	19399529	19399617	.	-	2	Parent=Os04t0394500-00
Chr04	irgsp1_rep	CDS	19399087	19399356	.	-	0	Parent=Os04t0394500-00
Chr04	irgsp1_rep	CDS	19398845	19399000	.	-	0	Parent=Os04t0394500-00
Chr04	irgsp1_rep	three_prime_UTR	19398838	19398844	.	-	.	Parent=Os04t0394500-00
Chr04	irgsp1_rep	mRNA	19411490	19418703	.	+	.	ID=Os04t0394700-01;Name=Os04t0394700-01;Locus_id=Os04g0394700;Note=BAR domain containing protein.;Transcript_evidence=AK072978 (DDBJ%2C Best hit);ORF_evidence=XP_002446327.1 (RefSeq);GO=Cellular Component: cytoplasm (GO:0005737),Molecular Function: protein binding (GO:0005515);InterPro=BAR (IPR004148);NIAS_FLcDNA=J023149O11;Expression=AK072978;TENOR=Os04t0394700-01;KEGG=Os04t0394700-01
Chr04	irgsp1_rep	five_prime_UTR	19411490	19411703	.	+	.	Parent=Os04t0394700-01
Chr04	irgsp1_rep	CDS	19411704	19411814	.	+	0	Parent=Os04t0394700-01
Chr04	irgsp1_rep	CDS	19413146	19413218	.	+	0	Parent=Os04t0394700-01
Chr04	irgsp1_rep	CDS	19413342	19413419	.	+	2	Parent=Os04t0394700-01
Chr04	irgsp1_rep	CDS	19413678	19413739	.	+	2	Parent=Os04t0394700-01
Chr04	irgsp1_rep	CDS	19413859	19413927	.	+	0	Parent=Os04t0394700-01
Chr04	irgsp1_rep	CDS	19414127	19414155	.	+	0	Parent=Os04t0394700-01
Chr04	irgsp1_rep	CDS	19414239	19414446	.	+	1	Parent=Os04t0394700-01
Chr04	irgsp1_rep	CDS	19414526	19414756	.	+	0	Parent=Os04t0394700-01
Chr04	irgsp1_rep	CDS	19415534	19415587	.	+	0	Parent=Os04t0394700-01
Chr04	irgsp1_rep	CDS	19416799	19417747	.	+	0	Parent=Os04t0394700-01
Chr04	irgsp1_rep	CDS	19418308	19418318	.	+	2	Parent=Os04t0394700-01
Chr04	irgsp1_rep	three_prime_UTR	19418319	19418703	.	+	.	Parent=Os04t0394700-01
Chr04	irgsp1_rep	mRNA	19419971	19420223	.	-	.	ID=Os04t0394733-00;Name=Os04t0394733-00;Locus_id=Os04g0394733;Note=Non-protein coding transcript.;Transcript_evidence=BT062831 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0394733-00
Chr04	irgsp1_rep	exon	19419971	19420223	.	-	.	Parent=Os04t0394733-00
Chr04	irgsp1_rep	mRNA	19420010	19421094	.	+	.	ID=Os04t0394766-00;Name=Os04t0394766-00;Locus_id=Os04g0394766;Note=Non-protein coding transcript.;Transcript_evidence=CT835071 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os04t0394766-00
Chr04	irgsp1_rep	exon	19420010	19421094	.	+	.	Parent=Os04t0394766-00
Chr04	irgsp1_rep	mRNA	19430045	19435342	.	-	.	ID=Os04t0395100-01;Name=Os04t0395100-01;Locus_id=Os04g0395100;Note=Protein of unknown function DUF26 domain containing protein.;Transcript_evidence=AK063396 (DDBJ%2C Best hit);ORF_evidence=B8ATA1 (UniProt);InterPro=Gnk2-homologous domain (IPR002902);NIAS_FLcDNA=001-114-H09;Expression=AK063396;TENOR=Os04t0395100-01;KEGG=Os04t0395100-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	19435341	19435342	.	-	.	Parent=Os04t0395100-01
Chr04	irgsp1_rep	CDS	19434363	19435340	.	-	0	Parent=Os04t0395100-01
Chr04	irgsp1_rep	three_prime_UTR	19434215	19434362	.	-	.	Parent=Os04t0395100-01
Chr04	irgsp1_rep	three_prime_UTR	19433502	19433733	.	-	.	Parent=Os04t0395100-01
Chr04	irgsp1_rep	three_prime_UTR	19430045	19430134	.	-	.	Parent=Os04t0395100-01
Chr04	irgsp1_rep	mRNA	19453774	19458208	.	-	.	ID=Os04t0395600-01;Name=Os04t0395600-01;Locus_id=Os04g0395600;RAP-DB Gene Symbol Synonym(s)=OsAFB2%2C OsAFB2-1;RAP-DB Gene Name Synonym(s)=AUXIN SIGNALING F-BOX 2%2C Auxin signaling f-box 2;Oryzabase Gene Symbol Synonym(s)=OsAFB2%2C ABF2%2C OsAFB2-1%2C OsAFB2-2%2C OsFbox206%2C Os_F0492;Oryzabase Gene Name Synonym(s)=Auxin signaling f-box 2%2C F-box protein 206;Note=Auxin receptor%2C Flag leaf inclination%2C Primary root growth%2C Crown root initiation%2C Seed development%2C Tillering;Transcript_evidence=AK072338;ORF_evidence=Q7XVM8;GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box-like domain superfamily (IPR036047),Leucine-rich repeat domain superfamily (IPR032675),F-box domain (IPR001810),Leucine-rich repeat%2C cysteine-containing subtype (IPR006553);NIAS_FLcDNA=J023042B17;Manual Curation=December 12%2C 2017;Literature_PMID=22846038,22253868;Oryzabase=9793;Expression=AK072338;TENOR=Os04t0395600-01;KEGG=Os04t0395600-01;Subcellular location=nucleus (GO:0005634)
Chr04	irgsp1_rep	five_prime_UTR	19457915	19458208	.	-	.	Parent=Os04t0395600-01
Chr04	irgsp1_rep	five_prime_UTR	19457365	19457777	.	-	.	Parent=Os04t0395600-01
Chr04	irgsp1_rep	CDS	19456913	19457364	.	-	0	Parent=Os04t0395600-01
Chr04	irgsp1_rep	CDS	19455807	19456302	.	-	1	Parent=Os04t0395600-01
Chr04	irgsp1_rep	CDS	19454926	19455705	.	-	0	Parent=Os04t0395600-01
Chr04	irgsp1_rep	three_prime_UTR	19454886	19454925	.	-	.	Parent=Os04t0395600-01
Chr04	irgsp1_rep	three_prime_UTR	19453774	19454257	.	-	.	Parent=Os04t0395600-01
Chr04	irgsp1_rep	mRNA	19454785	19457640	.	-	.	ID=Os04t0395600-02;Name=Os04t0395600-02;Locus_id=Os04g0395600;RAP-DB Gene Symbol Synonym(s)=OsAFB2%2C OsAFB2-2;RAP-DB Gene Name Synonym(s)=AUXIN SIGNALING F-BOX 2%2C Auxin signaling f-box 2;Oryzabase Gene Symbol Synonym(s)=OsAFB2%2C ABF2%2C OsAFB2-1%2C OsAFB2-2%2C OsFbox206%2C Os_F0492;Oryzabase Gene Name Synonym(s)=Auxin signaling f-box 2%2C F-box protein 206;Note=Auxin receptor%2C Flag leaf inclination%2C Primary root growth%2C Crown root initiation%2C Seed development%2C Tillering;Transcript_evidence=AK100862;ORF_evidence=Q7XVM8;GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box-like domain superfamily (IPR036047),Leucine-rich repeat domain superfamily (IPR032675),F-box domain (IPR001810),Leucine-rich repeat%2C cysteine-containing subtype (IPR006553);NIAS_FLcDNA=J023123O09;Manual Curation=December 12%2C 2017;Literature_PMID=22846038,22253868;Oryzabase=9793;Expression=AK100862;TENOR=Os04t0395600-02;Subcellular location=nucleus (GO:0005634)
Chr04	irgsp1_rep	five_prime_UTR	19457365	19457640	.	-	.	Parent=Os04t0395600-02
Chr04	irgsp1_rep	CDS	19456913	19457364	.	-	0	Parent=Os04t0395600-02
Chr04	irgsp1_rep	CDS	19455807	19456302	.	-	1	Parent=Os04t0395600-02
Chr04	irgsp1_rep	CDS	19454926	19455705	.	-	0	Parent=Os04t0395600-02
Chr04	irgsp1_rep	three_prime_UTR	19454785	19454925	.	-	.	Parent=Os04t0395600-02
Chr04	irgsp1_rep	mRNA	19453786	19455152	.	-	.	ID=Os04t0395600-03;Name=Os04t0395600-03;Locus_id=Os04g0395600;Oryzabase Gene Symbol Synonym(s)=OsAFB2%2C ABF2%2C OsAFB2-1%2C OsAFB2-2%2C OsFbox206%2C Os_F0492;Oryzabase Gene Name Synonym(s)=Auxin signaling f-box 2%2C F-box protein 206;Note=Similar to AFB2 (AUXIN SIGNALING F-BOX 2)%3B auxin binding / ubiquitin-protein ligase.;Transcript_evidence=AK103960 (DDBJ%2C Best hit);ORF_evidence=NP_566800.1 (RefSeq);NIAS_FLcDNA=001-015-D07;Oryzabase=9793;Expression=AK103960;TENOR=Os04t0395600-03;KEGG=Os04t0395600-03
Chr04	irgsp1_rep	five_prime_UTR	19455151	19455152	.	-	.	Parent=Os04t0395600-03
Chr04	irgsp1_rep	CDS	19454926	19455150	.	-	0	Parent=Os04t0395600-03
Chr04	irgsp1_rep	three_prime_UTR	19454886	19454925	.	-	.	Parent=Os04t0395600-03
Chr04	irgsp1_rep	three_prime_UTR	19453786	19454257	.	-	.	Parent=Os04t0395600-03
Chr04	irgsp1_rep	mRNA	19455050	19457385	.	+	.	ID=Os04t0395651-00;Name=Os04t0395651-00;Locus_id=Os04g0395651;Note=Hypothetical protein.;Transcript_evidence=tplb0032b19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0395651-00
Chr04	irgsp1_rep	five_prime_UTR	19455050	19455055	.	+	.	Parent=Os04t0395651-00
Chr04	irgsp1_rep	CDS	19455056	19455526	.	+	0	Parent=Os04t0395651-00
Chr04	irgsp1_rep	three_prime_UTR	19455527	19455684	.	+	.	Parent=Os04t0395651-00
Chr04	irgsp1_rep	three_prime_UTR	19455784	19456330	.	+	.	Parent=Os04t0395651-00
Chr04	irgsp1_rep	three_prime_UTR	19456939	19457385	.	+	.	Parent=Os04t0395651-00
Chr04	irgsp1_rep	mRNA	19479857	19484468	.	-	.	ID=Os04t0395700-00;Name=Os04t0395700-00;Locus_id=Os04g0395700;Note=Conserved hypothetical protein.;Transcript_evidence=CU405833 (DDBJ%2C Best hit);ORF_evidence=NP_001052660.2 (RefSeq);TENOR=Os04t0395700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	19484378	19484468	.	-	.	Parent=Os04t0395700-00
Chr04	irgsp1_rep	CDS	19483799	19484377	.	-	0	Parent=Os04t0395700-00
Chr04	irgsp1_rep	CDS	19480107	19480172	.	-	0	Parent=Os04t0395700-00
Chr04	irgsp1_rep	three_prime_UTR	19479857	19480106	.	-	.	Parent=Os04t0395700-00
Chr04	irgsp1_rep	mRNA	19492605	19497140	.	+	.	ID=Os04t0395800-01;Name=Os04t0395800-01;Locus_id=Os04g0395800;CGSNL Gene Symbol=TIFY9;CGSNL Gene Name=TIFY GENE 9;Oryzabase Gene Symbol Synonym(s)=OsJAZ11%2C OsJAZ5%2C OsTIFY9%2C JAZ11%2C JAZ11/TIFY9;Oryzabase Gene Name Synonym(s)=Jasmonate ZIM-domain protein 5%2C Jasmonate ZIM-domain protein 11.;Note=Tify domain containing protein.;Transcript_evidence=AK107750 (DDBJ%2C Best hit);ORF_evidence=A2XSX6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Tify (IPR010399),CO/COL/TOC1%2C conserved site (IPR018467);NIAS_FLcDNA=002-132-H08;Oryzabase=9497;Expression=AK107750;TENOR=Os04t0395800-01;KEGG=Os04t0395800-01
Chr04	irgsp1_rep	five_prime_UTR	19492605	19492650	.	+	.	Parent=Os04t0395800-01
Chr04	irgsp1_rep	CDS	19492651	19492771	.	+	0	Parent=Os04t0395800-01
Chr04	irgsp1_rep	CDS	19492890	19493080	.	+	2	Parent=Os04t0395800-01
Chr04	irgsp1_rep	CDS	19494593	19494680	.	+	0	Parent=Os04t0395800-01
Chr04	irgsp1_rep	CDS	19494805	19494859	.	+	2	Parent=Os04t0395800-01
Chr04	irgsp1_rep	CDS	19496723	19496834	.	+	1	Parent=Os04t0395800-01
Chr04	irgsp1_rep	three_prime_UTR	19496835	19497140	.	+	.	Parent=Os04t0395800-01
Chr04	irgsp1_rep	mRNA	19498820	19504766	.	-	.	ID=Os04t0395900-01;Name=Os04t0395900-01;Locus_id=Os04g0395900;Note=Polynucleotide adenylyltransferase region domain containing protein.;Transcript_evidence=AK120062 (DDBJ%2C Best hit);ORF_evidence=NP_197758.2 (RefSeq);GO=Biological Process: RNA processing (GO:0006396),Molecular Function: RNA binding (GO:0003723),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=Poly A polymerase%2C head domain (IPR002646);NIAS_FLcDNA=J013001K04;Expression=AK120062;TENOR=Os04t0395900-01;KEGG=Os04t0395900-01
Chr04	irgsp1_rep	five_prime_UTR	19504730	19504766	.	-	.	Parent=Os04t0395900-01
Chr04	irgsp1_rep	CDS	19504534	19504729	.	-	0	Parent=Os04t0395900-01
Chr04	irgsp1_rep	CDS	19504292	19504414	.	-	2	Parent=Os04t0395900-01
Chr04	irgsp1_rep	CDS	19503314	19503411	.	-	2	Parent=Os04t0395900-01
Chr04	irgsp1_rep	CDS	19502713	19502799	.	-	0	Parent=Os04t0395900-01
Chr04	irgsp1_rep	CDS	19502413	19502543	.	-	0	Parent=Os04t0395900-01
Chr04	irgsp1_rep	CDS	19502255	19502327	.	-	1	Parent=Os04t0395900-01
Chr04	irgsp1_rep	CDS	19502099	19502144	.	-	0	Parent=Os04t0395900-01
Chr04	irgsp1_rep	CDS	19501895	19502004	.	-	2	Parent=Os04t0395900-01
Chr04	irgsp1_rep	CDS	19501703	19501810	.	-	0	Parent=Os04t0395900-01
Chr04	irgsp1_rep	CDS	19501288	19501347	.	-	0	Parent=Os04t0395900-01
Chr04	irgsp1_rep	CDS	19500678	19500739	.	-	0	Parent=Os04t0395900-01
Chr04	irgsp1_rep	CDS	19500121	19500433	.	-	1	Parent=Os04t0395900-01
Chr04	irgsp1_rep	CDS	19499214	19499435	.	-	0	Parent=Os04t0395900-01
Chr04	irgsp1_rep	three_prime_UTR	19498820	19499213	.	-	.	Parent=Os04t0395900-01
Chr04	irgsp1_rep	mRNA	19563980	19575929	.	+	.	ID=Os04t0396500-01;Name=Os04t0396500-01;Locus_id=Os04g0396500;RAP-DB Gene Symbol Synonym(s)=LAX2;RAP-DB Gene Name Synonym(s)=LAX PANICLE 2%2C LAX PANICLE2;CGSNL Gene Symbol=LAX2;CGSNL Gene Name=LAX PANICLE 2;Oryzabase Gene Symbol Synonym(s)=OsLAX2%2C Gnp4/LAX2%2C Gnp4;Oryzabase Gene Name Synonym(s)=lax panicle2%2C Grain number per-panicle 4;Note=Regulation of axillary meristem formation;Transcript_evidence=AB669025;ORF_evidence=G3XKQ9;Manual Curation=May 11%2C 2017;Literature_PMID=21963665;Oryzabase=14304;TENOR=Os04t0396500-00;Subcellular location=nucleus (GO:0005634)
Chr04	irgsp1_rep	five_prime_UTR	19563980	19564094	.	+	.	Parent=Os04t0396500-01
Chr04	irgsp1_rep	CDS	19564095	19564984	.	+	0	Parent=Os04t0396500-01
Chr04	irgsp1_rep	CDS	19565350	19565400	.	+	1	Parent=Os04t0396500-01
Chr04	irgsp1_rep	CDS	19565623	19565695	.	+	1	Parent=Os04t0396500-01
Chr04	irgsp1_rep	CDS	19575644	19575814	.	+	0	Parent=Os04t0396500-01
Chr04	irgsp1_rep	three_prime_UTR	19575815	19575929	.	+	.	Parent=Os04t0396500-01
Chr04	irgsp1_rep	mRNA	19566018	19566769	.	-	.	ID=Os04t0396550-01;Name=Os04t0396550-01;Locus_id=Os04g0396550;Note=Hypothetical conserved gene.;Transcript_evidence=AK241649 (DDBJ%2C Best hit);ORF_evidence=B9FEY4 (UniProt);NIAS_FLcDNA=J065190L23;TENOR=Os04t0396550-01;KEGG=Os04t0396550-01
Chr04	irgsp1_rep	five_prime_UTR	19566527	19566769	.	-	.	Parent=Os04t0396550-01
Chr04	irgsp1_rep	five_prime_UTR	19566314	19566316	.	-	.	Parent=Os04t0396550-01
Chr04	irgsp1_rep	CDS	19566089	19566313	.	-	0	Parent=Os04t0396550-01
Chr04	irgsp1_rep	three_prime_UTR	19566018	19566088	.	-	.	Parent=Os04t0396550-01
Chr04	irgsp1_rep	mRNA	19591901	19595239	.	+	.	ID=Os04t0396800-01;Name=Os04t0396800-01;Locus_id=Os04g0396800;CGSNL Gene Symbol=SCP24;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 24;Oryzabase Gene Symbol Synonym(s)=OsSCP24;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 24;Note=Peptidase S10%2C serine carboxypeptidase family protein.;Transcript_evidence=AK070195 (DDBJ%2C Best hit);ORF_evidence=NP_001150027.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=J023043E04;Oryzabase=19207;Expression=AK070195;TENOR=Os04t0396800-01;KEGG=Os04t0396800-01 (EC:3.4.16.6)
Chr04	irgsp1_rep	five_prime_UTR	19591901	19591953	.	+	.	Parent=Os04t0396800-01
Chr04	irgsp1_rep	CDS	19591954	19592215	.	+	0	Parent=Os04t0396800-01
Chr04	irgsp1_rep	CDS	19592636	19592737	.	+	2	Parent=Os04t0396800-01
Chr04	irgsp1_rep	CDS	19592883	19592978	.	+	2	Parent=Os04t0396800-01
Chr04	irgsp1_rep	CDS	19593069	19593161	.	+	2	Parent=Os04t0396800-01
Chr04	irgsp1_rep	CDS	19593258	19593337	.	+	2	Parent=Os04t0396800-01
Chr04	irgsp1_rep	CDS	19593444	19593725	.	+	0	Parent=Os04t0396800-01
Chr04	irgsp1_rep	CDS	19594068	19594195	.	+	0	Parent=Os04t0396800-01
Chr04	irgsp1_rep	CDS	19594578	19594947	.	+	1	Parent=Os04t0396800-01
Chr04	irgsp1_rep	three_prime_UTR	19594948	19595239	.	+	.	Parent=Os04t0396800-01
Chr04	irgsp1_rep	mRNA	19592738	19595236	.	+	.	ID=Os04t0396800-02;Name=Os04t0396800-02;Locus_id=Os04g0396800;CGSNL Gene Symbol=SCP24;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 24;Oryzabase Gene Symbol Synonym(s)=OsSCP24;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 24;Note=Similar to serine carboxypeptidase K10B2.2.;Transcript_evidence=AK072224 (DDBJ%2C Best hit);ORF_evidence=NP_001150027.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=J013165F10;Oryzabase=19207;Expression=AK072224;TENOR=Os04t0396800-02;KEGG=Os04t0396800-02 (EC:3.4.16.6)
Chr04	irgsp1_rep	five_prime_UTR	19592738	19592758	.	+	.	Parent=Os04t0396800-02
Chr04	irgsp1_rep	CDS	19592759	19592978	.	+	0	Parent=Os04t0396800-02
Chr04	irgsp1_rep	CDS	19593069	19593161	.	+	2	Parent=Os04t0396800-02
Chr04	irgsp1_rep	CDS	19593258	19593337	.	+	2	Parent=Os04t0396800-02
Chr04	irgsp1_rep	CDS	19593444	19593725	.	+	0	Parent=Os04t0396800-02
Chr04	irgsp1_rep	CDS	19594068	19594195	.	+	0	Parent=Os04t0396800-02
Chr04	irgsp1_rep	CDS	19594578	19594947	.	+	1	Parent=Os04t0396800-02
Chr04	irgsp1_rep	three_prime_UTR	19594948	19595236	.	+	.	Parent=Os04t0396800-02
Chr04	irgsp1_rep	mRNA	19593697	19595075	.	+	.	ID=Os04t0396800-03;Name=Os04t0396800-03;Locus_id=Os04g0396800;CGSNL Gene Symbol=SCP24;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 24;Oryzabase Gene Symbol Synonym(s)=OsSCP24;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 24;Note=Similar to serine carboxypeptidase K10B2.2.;Transcript_evidence=AK062632 (DDBJ%2C Best hit);ORF_evidence=NP_001150027.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=001-105-C10;Oryzabase=19207;Expression=AK062632;TENOR=Os04t0396800-03;KEGG=Os04t0396800-03 (EC:3.4.16.6)
Chr04	irgsp1_rep	five_prime_UTR	19593697	19593698	.	+	.	Parent=Os04t0396800-03
Chr04	irgsp1_rep	CDS	19593699	19593725	.	+	0	Parent=Os04t0396800-03
Chr04	irgsp1_rep	CDS	19594068	19594195	.	+	0	Parent=Os04t0396800-03
Chr04	irgsp1_rep	CDS	19594578	19594947	.	+	1	Parent=Os04t0396800-03
Chr04	irgsp1_rep	three_prime_UTR	19594948	19595075	.	+	.	Parent=Os04t0396800-03
Chr04	irgsp1_rep	mRNA	19598206	19600818	.	+	.	ID=Os04t0397000-01;Name=Os04t0397000-01;Locus_id=Os04g0397000;Oryzabase Gene Symbol Synonym(s)=dad-1%2C DAD-1%2C DAD1;Oryzabase Gene Name Synonym(s)=defender against apoptotic death 1;Note=Defender against cell death 1 (DAD-1) (Defender against apoptotic death 1 protein).;Transcript_evidence=AK063198 (DDBJ%2C Best hit);ORF_evidence=Q0JDK9 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Defender against death DAD protein (IPR003038);NIAS_FLcDNA=001-112-C05;Oryzabase=13777;Expression=AK063198;TENOR=Os04t0397000-01;KEGG=Os04t0397000-01
Chr04	irgsp1_rep	five_prime_UTR	19598206	19598316	.	+	.	Parent=Os04t0397000-01
Chr04	irgsp1_rep	five_prime_UTR	19599296	19599314	.	+	.	Parent=Os04t0397000-01
Chr04	irgsp1_rep	CDS	19599315	19599395	.	+	0	Parent=Os04t0397000-01
Chr04	irgsp1_rep	CDS	19599471	19599518	.	+	0	Parent=Os04t0397000-01
Chr04	irgsp1_rep	CDS	19600163	19600250	.	+	0	Parent=Os04t0397000-01
Chr04	irgsp1_rep	CDS	19600331	19600374	.	+	2	Parent=Os04t0397000-01
Chr04	irgsp1_rep	CDS	19600460	19600543	.	+	0	Parent=Os04t0397000-01
Chr04	irgsp1_rep	three_prime_UTR	19600544	19600818	.	+	.	Parent=Os04t0397000-01
Chr04	irgsp1_rep	mRNA	19601504	19603306	.	-	.	ID=Os04t0397100-01;Name=Os04t0397100-01;Locus_id=Os04g0397100;CGSNL Gene Symbol=CLPC1;CGSNL Gene Name=CLASS I CLP ATPASE C1;Oryzabase Gene Symbol Synonym(s)=ClpC1;Oryzabase Gene Name Synonym(s)=class I Clp ATPase C1;Note=Similar to ClpC protease.;Transcript_evidence=AK058510 (DDBJ%2C Best hit);ORF_evidence=E5GBL8 (UniProt);GO=Biological Process: nucleotide-excision repair (GO:0006289),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: DNA binding (GO:0003677),Molecular Function: nuclease activity (GO:0004518),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=Chaperonin ClpA/B (IPR001270),UvrB/UvrC protein (IPR001943),ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-2 (IPR013093),Clp ATPase%2C C-terminal (IPR019489);NIAS_FLcDNA=001-016-G07;Oryzabase=8946;Expression=AK058510;TENOR=Os04t0397100-01;KEGG=Os04t0397100-01
Chr04	irgsp1_rep	CDS	19603274	19603306	.	-	0	Parent=Os04t0397100-01
Chr04	irgsp1_rep	CDS	19601814	19602992	.	-	0	Parent=Os04t0397100-01
Chr04	irgsp1_rep	three_prime_UTR	19601504	19601813	.	-	.	Parent=Os04t0397100-01
Chr04	irgsp1_rep	mRNA	19601466	19601625	.	-	.	ID=Os04t0397100-02;Name=Os04t0397100-02;Locus_id=Os04g0397100;CGSNL Gene Symbol=CLPC1;CGSNL Gene Name=CLASS I CLP ATPASE C1;Oryzabase Gene Symbol Synonym(s)=ClpC1;Oryzabase Gene Name Synonym(s)=class I Clp ATPase C1;Note=Non-protein coding transcript.;Transcript_evidence=AK058949 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-020-A06;Oryzabase=8946;TENOR=Os04t0397100-02
Chr04	irgsp1_rep	exon	19601466	19601625	.	-	.	Parent=Os04t0397100-02
Chr04	irgsp1_rep	mRNA	19612338	19612689	.	+	.	ID=Os04t0397400-01;Name=Os04t0397400-01;Locus_id=Os04g0397400;Note=Conserved hypothetical protein.;Transcript_evidence=AK059476 (DDBJ%2C Best hit);ORF_evidence=Q7F9I0 (UniProt);NIAS_FLcDNA=001-028-E10;Expression=AK059476;TENOR=Os04t0397400-01;KEGG=Os04t0397400-01
Chr04	irgsp1_rep	five_prime_UTR	19612338	19612339	.	+	.	Parent=Os04t0397400-01
Chr04	irgsp1_rep	CDS	19612340	19612456	.	+	0	Parent=Os04t0397400-01
Chr04	irgsp1_rep	three_prime_UTR	19612457	19612689	.	+	.	Parent=Os04t0397400-01
Chr04	irgsp1_rep	mRNA	19612844	19613317	.	-	.	ID=Os04t0397500-00;Name=Os04t0397500-00;Locus_id=Os04g0397500;Note=Similar to gt-2-related.;Transcript_evidence=CT835082 (DDBJ%2C Best hit);ORF_evidence=NP_850213.1 (RefSeq);TENOR=Os04t0397500-00;KEGG=Os04t0397500-00
Chr04	irgsp1_rep	five_prime_UTR	19613316	19613317	.	-	.	Parent=Os04t0397500-00
Chr04	irgsp1_rep	CDS	19613118	19613315	.	-	0	Parent=Os04t0397500-00
Chr04	irgsp1_rep	three_prime_UTR	19612844	19613117	.	-	.	Parent=Os04t0397500-00
Chr04	irgsp1_rep	mRNA	19629517	19629745	.	+	.	ID=Os04t0397601-00;Name=Os04t0397601-00;Locus_id=Os04g0397601;Note=Non-protein coding transcript.;Transcript_evidence=CT835050 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os04t0397601-00
Chr04	irgsp1_rep	exon	19629517	19629745	.	+	.	Parent=Os04t0397601-00
Chr04	irgsp1_rep	mRNA	19627302	19630185	.	+	.	ID=Os04t0397700-00;Name=Os04t0397700-00;Locus_id=Os04g0397700;Note=Similar to DNA binding.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_199906.1 (RefSeq);GO=Biological Process: transcription initiation%2C DNA-dependent (GO:0006352),Molecular Function: DNA binding (GO:0003677);InterPro=Transcription factor TAFII-31 (IPR003162),Histone-fold (IPR009072);TENOR=Os04t0397700-00
Chr04	irgsp1_rep	CDS	19627302	19627434	.	+	0	Parent=Os04t0397700-00
Chr04	irgsp1_rep	CDS	19627556	19627627	.	+	2	Parent=Os04t0397700-00
Chr04	irgsp1_rep	CDS	19629209	19629289	.	+	2	Parent=Os04t0397700-00
Chr04	irgsp1_rep	CDS	19629400	19629512	.	+	2	Parent=Os04t0397700-00
Chr04	irgsp1_rep	CDS	19630156	19630185	.	+	0	Parent=Os04t0397700-00
Chr04	irgsp1_rep	mRNA	19636918	19637755	.	+	.	ID=Os04t0397800-01;Name=Os04t0397800-01;Locus_id=Os04g0397800;Note=Conserved hypothetical protein.;Transcript_evidence=AK106655 (DDBJ%2C Best hit);ORF_evidence=Q6H4H3 (UniProt);NIAS_FLcDNA=002-113-G04;Oryzabase=22559;TENOR=Os04t0397800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	19636918	19636919	.	+	.	Parent=Os04t0397800-01
Chr04	irgsp1_rep	CDS	19636920	19637171	.	+	0	Parent=Os04t0397800-01
Chr04	irgsp1_rep	three_prime_UTR	19637172	19637755	.	+	.	Parent=Os04t0397800-01
Chr04	irgsp1_rep	mRNA	19636951	19638406	.	+	.	ID=Os04t0397800-02;Name=Os04t0397800-02;Locus_id=Os04g0397800;Note=Conserved hypothetical protein.;Transcript_evidence=AK109584 (DDBJ%2C Best hit);ORF_evidence=Q6H4H3 (UniProt);NIAS_FLcDNA=002-137-A10;Oryzabase=22559;TENOR=Os04t0397800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	19636951	19636952	.	+	.	Parent=Os04t0397800-02
Chr04	irgsp1_rep	CDS	19636953	19637171	.	+	0	Parent=Os04t0397800-02
Chr04	irgsp1_rep	three_prime_UTR	19637172	19638406	.	+	.	Parent=Os04t0397800-02
Chr04	irgsp1_rep	mRNA	19640800	19642141	.	-	.	ID=Os04t0397901-01;Name=Os04t0397901-01;Locus_id=Os04g0397901;Note=Conserved hypothetical protein.;Transcript_evidence=AK240988 (DDBJ%2C Best hit);ORF_evidence=B9FSI3 (UniProt);NIAS_FLcDNA=J065050P16;TENOR=Os04t0397901-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	19642141	19642141	.	-	.	Parent=Os04t0397901-01
Chr04	irgsp1_rep	CDS	19641998	19642140	.	-	0	Parent=Os04t0397901-01
Chr04	irgsp1_rep	CDS	19641795	19641901	.	-	1	Parent=Os04t0397901-01
Chr04	irgsp1_rep	CDS	19641665	19641678	.	-	2	Parent=Os04t0397901-01
Chr04	irgsp1_rep	three_prime_UTR	19641552	19641664	.	-	.	Parent=Os04t0397901-01
Chr04	irgsp1_rep	three_prime_UTR	19640800	19641013	.	-	.	Parent=Os04t0397901-01
Chr04	irgsp1_rep	mRNA	19651665	19654024	.	+	.	ID=Os04t0398000-01;Name=Os04t0398000-01;Locus_id=Os04g0398000;RAP-DB Gene Symbol Synonym(s)=OsERF101%2C OsRAP2.6;RAP-DB Gene Name Synonym(s)=ethylene response factor 101%2C Oryza sativa Rap2.6;CGSNL Gene Symbol=ERF101;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 101;Oryzabase Gene Symbol Synonym(s)=OsERF#101%2C OsERF101%2C OsDERF6%2C DERF6%2C AP2/EREBP#089%2C AP2/EREBP89%2C OsRap2.6%2C Rap2.6;Oryzabase Gene Name Synonym(s)=ETHYLENE-RESPONSIVE ELEMENT-BINDING FACTOR 101%2C drought-responsive ethylene response factor 6%2C drought-responsive ERF 6%2C ethylene response factor 101%2C APETALA2/ethylene-responsive element binding protein 89;Note=ERF transcription factor%2C A member of APETALA2/Ethylene-Responsive Element Binding Protein(AP2/EREBP) family%2C Regulation of drought stress response%2C Innate immunity;Transcript_evidence=AK101501;ORF_evidence=Q7XLG6;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-binding transcription factor activity (GO:0003700);InterPro=AP2/ERF domain superfamily (IPR036955),DNA-binding domain superfamily (IPR016177),AP2/ERF domain (IPR001471);NIAS_FLcDNA=J033044C14;Manual Curation=August 28%2C 2018;Literature_PMID=30143992,24280008;Oryzabase=9499;Expression=AK101501;TENOR=Os04t0398000-01;KEGG=Os04t0398000-01;Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737)
Chr04	irgsp1_rep	five_prime_UTR	19651665	19652156	.	+	.	Parent=Os04t0398000-01
Chr04	irgsp1_rep	CDS	19652157	19652340	.	+	0	Parent=Os04t0398000-01
Chr04	irgsp1_rep	CDS	19652849	19653471	.	+	2	Parent=Os04t0398000-01
Chr04	irgsp1_rep	three_prime_UTR	19653472	19654024	.	+	.	Parent=Os04t0398000-01
Chr04	irgsp1_rep	mRNA	19651755	19656024	.	+	.	ID=Os04t0398000-02;Name=Os04t0398000-02;Locus_id=Os04g0398000;CGSNL Gene Symbol=ERF101;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 101;Oryzabase Gene Symbol Synonym(s)=OsERF#101%2C OsERF101%2C OsDERF6%2C DERF6%2C AP2/EREBP#089%2C AP2/EREBP89%2C OsRap2.6%2C Rap2.6;Oryzabase Gene Name Synonym(s)=ETHYLENE-RESPONSIVE ELEMENT-BINDING FACTOR 101%2C drought-responsive ethylene response factor 6%2C drought-responsive ERF 6%2C ethylene response factor 101%2C APETALA2/ethylene-responsive element binding protein 89;Note=Pathogenesis-related transcriptional factor and ERF domain containing protein.;Transcript_evidence=AK287453 (DDBJ%2C Best hit);ORF_evidence=NP_001052669.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J043018P10;Oryzabase=9499;TENOR=Os04t0398000-02;KEGG=Os04t0398000-02
Chr04	irgsp1_rep	five_prime_UTR	19651755	19652156	.	+	.	Parent=Os04t0398000-02
Chr04	irgsp1_rep	CDS	19652157	19652340	.	+	0	Parent=Os04t0398000-02
Chr04	irgsp1_rep	CDS	19652849	19653471	.	+	2	Parent=Os04t0398000-02
Chr04	irgsp1_rep	three_prime_UTR	19653472	19656024	.	+	.	Parent=Os04t0398000-02
Chr04	irgsp1_rep	mRNA	19679498	19681903	.	+	.	ID=Os04t0398300-01;Name=Os04t0398300-01;Locus_id=Os04g0398300;Note=Similar to Glycyl-tRNA synthetase%2C mitochondrial precursor (EC 6.1.1.14) (Glycine--tRNA ligase) (GlyRS).;Transcript_evidence=AK061199 (DDBJ%2C Best hit);ORF_evidence=Q01L37 (UniProt);GO=Biological Process: glycyl-tRNA aminoacylation (GO:0006426),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: glycine-tRNA ligase activity (GO:0004820),Molecular Function: ATP binding (GO:0005524);InterPro=Glycyl-tRNA synthetase%2C alpha2 dimer (IPR002315),Anticodon-binding (IPR004154);NIAS_FLcDNA=006-210-A04;Expression=AK061199;TENOR=Os04t0398300-01;KEGG=Os04t0398300-01 (EC:6.1.1.14)
Chr04	irgsp1_rep	five_prime_UTR	19679498	19679499	.	+	.	Parent=Os04t0398300-01
Chr04	irgsp1_rep	CDS	19679500	19679580	.	+	0	Parent=Os04t0398300-01
Chr04	irgsp1_rep	CDS	19680063	19680122	.	+	0	Parent=Os04t0398300-01
Chr04	irgsp1_rep	CDS	19680260	19680340	.	+	0	Parent=Os04t0398300-01
Chr04	irgsp1_rep	CDS	19680427	19680832	.	+	0	Parent=Os04t0398300-01
Chr04	irgsp1_rep	CDS	19681479	19681729	.	+	2	Parent=Os04t0398300-01
Chr04	irgsp1_rep	three_prime_UTR	19681730	19681903	.	+	.	Parent=Os04t0398300-01
Chr04	irgsp1_rep	mRNA	19681478	19681906	.	+	.	ID=Os04t0398300-02;Name=Os04t0398300-02;Locus_id=Os04g0398300;Note=Similar to H0209H04.1 protein.;Transcript_evidence=AK059136 (DDBJ%2C Best hit);ORF_evidence=Q01L37 (UniProt);GO=Biological Process: glycyl-tRNA aminoacylation (GO:0006426),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: glycine-tRNA ligase activity (GO:0004820),Molecular Function: ATP binding (GO:0005524);InterPro=Glycyl-tRNA synthetase%2C alpha2 dimer (IPR002315),Anticodon-binding (IPR004154);NIAS_FLcDNA=001-022-H06;Expression=AK059136;TENOR=Os04t0398300-02;KEGG=Os04t0398300-02 (EC:6.1.1.14)
Chr04	irgsp1_rep	CDS	19681478	19681729	.	+	0	Parent=Os04t0398300-02
Chr04	irgsp1_rep	three_prime_UTR	19681730	19681906	.	+	.	Parent=Os04t0398300-02
Chr04	irgsp1_rep	mRNA	19684933	19685623	.	-	.	ID=Os04t0398400-01;Name=Os04t0398400-01;Locus_id=Os04g0398400;Note=Hypothetical protein.;Transcript_evidence=AK111123 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-176-C04;Expression=AK111123;TENOR=Os04t0398400-01;KEGG=Os04t0398400-01
Chr04	irgsp1_rep	five_prime_UTR	19685562	19685623	.	-	.	Parent=Os04t0398400-01
Chr04	irgsp1_rep	CDS	19685319	19685561	.	-	0	Parent=Os04t0398400-01
Chr04	irgsp1_rep	three_prime_UTR	19684933	19685318	.	-	.	Parent=Os04t0398400-01
Chr04	irgsp1_rep	mRNA	19685272	19687980	.	+	.	ID=Os04t0398500-01;Name=Os04t0398500-01;Locus_id=Os04g0398500;Note=Similar to Ubiquinol-cytoChrome c reductase iron-sulfur subunit%2C mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP).;Transcript_evidence=AK059519 (DDBJ%2C Best hit);ORF_evidence=Q01L36 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: membrane (GO:0016020),Molecular Function: ubiquinol-cytoChrome-c reductase activity (GO:0008121),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on diphenols and related substances as donors (GO:0016679),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=Ubiquinol cytoChrome reductase%2C transmembrane domain (IPR004192),Rieske iron-sulphur protein%2C C-terminal (IPR005805),Ubiquinol-cytoChrome c reductase%2C iron-sulphur subunit (IPR006317),Rieske iron-sulphur protein (IPR014349),Rieske [2Fe-2S] iron-sulphur domain (IPR017941);NIAS_FLcDNA=001-029-C04;Expression=AK059519;TENOR=Os04t0398500-01;KEGG=Os04t0398500-01 (EC:1.10.2.2)
Chr04	irgsp1_rep	five_prime_UTR	19685272	19685400	.	+	.	Parent=Os04t0398500-01
Chr04	irgsp1_rep	CDS	19685401	19685590	.	+	0	Parent=Os04t0398500-01
Chr04	irgsp1_rep	CDS	19687058	19687704	.	+	2	Parent=Os04t0398500-01
Chr04	irgsp1_rep	three_prime_UTR	19687705	19687980	.	+	.	Parent=Os04t0398500-01
Chr04	irgsp1_rep	mRNA	19690552	19693300	.	+	.	ID=Os04t0398600-01;Name=Os04t0398600-01;Locus_id=Os04g0398600;Note=Similar to Pectin-glucuronyltransferase.;Transcript_evidence=AK073335 (DDBJ%2C Best hit);ORF_evidence=Q01L35 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);NIAS_FLcDNA=J033026F13;Expression=AK073335;TENOR=Os04t0398600-01;KEGG=Os04t0398600-01
Chr04	irgsp1_rep	five_prime_UTR	19690552	19690798	.	+	.	Parent=Os04t0398600-01
Chr04	irgsp1_rep	CDS	19690799	19690916	.	+	0	Parent=Os04t0398600-01
Chr04	irgsp1_rep	CDS	19691689	19692077	.	+	2	Parent=Os04t0398600-01
Chr04	irgsp1_rep	CDS	19692268	19692509	.	+	0	Parent=Os04t0398600-01
Chr04	irgsp1_rep	CDS	19692594	19693107	.	+	1	Parent=Os04t0398600-01
Chr04	irgsp1_rep	three_prime_UTR	19693108	19693300	.	+	.	Parent=Os04t0398600-01
Chr04	irgsp1_rep	mRNA	19690609	19694676	.	+	.	ID=Os04t0398600-02;Name=Os04t0398600-02;Locus_id=Os04g0398600;Note=Similar to Pectin-glucuronyltransferase.;Transcript_evidence=AK107473 (DDBJ%2C Best hit);ORF_evidence=Q01L35 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);NIAS_FLcDNA=002-129-B06;Expression=AK107473;TENOR=Os04t0398600-02;KEGG=Os04t0398600-02
Chr04	irgsp1_rep	five_prime_UTR	19690609	19690798	.	+	.	Parent=Os04t0398600-02
Chr04	irgsp1_rep	CDS	19690799	19690916	.	+	0	Parent=Os04t0398600-02
Chr04	irgsp1_rep	CDS	19691689	19692077	.	+	2	Parent=Os04t0398600-02
Chr04	irgsp1_rep	CDS	19692268	19692509	.	+	0	Parent=Os04t0398600-02
Chr04	irgsp1_rep	CDS	19692594	19693107	.	+	1	Parent=Os04t0398600-02
Chr04	irgsp1_rep	three_prime_UTR	19693108	19693409	.	+	.	Parent=Os04t0398600-02
Chr04	irgsp1_rep	three_prime_UTR	19693553	19693963	.	+	.	Parent=Os04t0398600-02
Chr04	irgsp1_rep	three_prime_UTR	19694076	19694676	.	+	.	Parent=Os04t0398600-02
Chr04	irgsp1_rep	mRNA	19691881	19693300	.	+	.	ID=Os04t0398600-03;Name=Os04t0398600-03;Locus_id=Os04g0398600;Note=Similar to H0209H04.3 protein.;Transcript_evidence=AK059806 (DDBJ%2C Best hit);ORF_evidence=Q01L35 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);NIAS_FLcDNA=006-204-G11;Expression=AK059806;TENOR=Os04t0398600-03;KEGG=Os04t0398600-03
Chr04	irgsp1_rep	five_prime_UTR	19691881	19691882	.	+	.	Parent=Os04t0398600-03
Chr04	irgsp1_rep	CDS	19691883	19692077	.	+	0	Parent=Os04t0398600-03
Chr04	irgsp1_rep	CDS	19692268	19692509	.	+	0	Parent=Os04t0398600-03
Chr04	irgsp1_rep	CDS	19692594	19693107	.	+	1	Parent=Os04t0398600-03
Chr04	irgsp1_rep	three_prime_UTR	19693108	19693300	.	+	.	Parent=Os04t0398600-03
Chr04	irgsp1_rep	mRNA	19693167	19694275	.	-	.	ID=Os04t0398700-00;Name=Os04t0398700-00;Locus_id=Os04g0398700;Oryzabase Gene Symbol Synonym(s)=PS1;Oryzabase Gene Name Synonym(s)=Pollen Specific 1;Note=Similar to Pollen specific protein C13 precursor.;Transcript_evidence=AK375503 (DDBJ);ORF_evidence=Q01L34 (UniProt);GO=Cellular Component: extracellular space (GO:0005615);InterPro=Allergen Ole e 1%2C conserved site (IPR006040),Pollen Ole e 1 allergen/extensin (IPR006041);Oryzabase=12513;TENOR=Os04t0398700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	19694268	19694275	.	-	.	Parent=Os04t0398700-00
Chr04	irgsp1_rep	CDS	19694105	19694267	.	-	0	Parent=Os04t0398700-00
Chr04	irgsp1_rep	CDS	19693584	19693918	.	-	2	Parent=Os04t0398700-00
Chr04	irgsp1_rep	three_prime_UTR	19693455	19693583	.	-	.	Parent=Os04t0398700-00
Chr04	irgsp1_rep	three_prime_UTR	19693167	19693393	.	-	.	Parent=Os04t0398700-00
Chr04	irgsp1_rep	mRNA	19695374	19709946	.	-	.	ID=Os04t0398800-01;Name=Os04t0398800-01;Locus_id=Os04g0398800;Note=Similar to H0209H04.5 protein.;Transcript_evidence=AK065158 (DDBJ%2C Best hit);ORF_evidence=Q01L33 (UniProt);InterPro=WASH complex%2C subunit strumpellin (IPR019393);NIAS_FLcDNA=J013002B23;Expression=AK065158;TENOR=Os04t0398800-01;KEGG=Os04t0398800-01
Chr04	irgsp1_rep	five_prime_UTR	19709895	19709946	.	-	.	Parent=Os04t0398800-01
Chr04	irgsp1_rep	CDS	19709713	19709894	.	-	0	Parent=Os04t0398800-01
Chr04	irgsp1_rep	CDS	19709393	19709567	.	-	1	Parent=Os04t0398800-01
Chr04	irgsp1_rep	CDS	19708608	19709276	.	-	0	Parent=Os04t0398800-01
Chr04	irgsp1_rep	CDS	19708256	19708393	.	-	0	Parent=Os04t0398800-01
Chr04	irgsp1_rep	CDS	19708020	19708118	.	-	0	Parent=Os04t0398800-01
Chr04	irgsp1_rep	CDS	19707770	19707895	.	-	0	Parent=Os04t0398800-01
Chr04	irgsp1_rep	CDS	19707180	19707242	.	-	0	Parent=Os04t0398800-01
Chr04	irgsp1_rep	CDS	19706946	19707038	.	-	0	Parent=Os04t0398800-01
Chr04	irgsp1_rep	CDS	19706254	19706364	.	-	0	Parent=Os04t0398800-01
Chr04	irgsp1_rep	CDS	19705915	19706078	.	-	0	Parent=Os04t0398800-01
Chr04	irgsp1_rep	CDS	19705261	19705339	.	-	1	Parent=Os04t0398800-01
Chr04	irgsp1_rep	CDS	19704884	19704988	.	-	0	Parent=Os04t0398800-01
Chr04	irgsp1_rep	CDS	19703977	19704033	.	-	0	Parent=Os04t0398800-01
Chr04	irgsp1_rep	CDS	19703614	19703658	.	-	0	Parent=Os04t0398800-01
Chr04	irgsp1_rep	CDS	19703429	19703519	.	-	0	Parent=Os04t0398800-01
Chr04	irgsp1_rep	CDS	19702977	19703050	.	-	2	Parent=Os04t0398800-01
Chr04	irgsp1_rep	CDS	19701662	19701736	.	-	0	Parent=Os04t0398800-01
Chr04	irgsp1_rep	CDS	19701471	19701575	.	-	0	Parent=Os04t0398800-01
Chr04	irgsp1_rep	three_prime_UTR	19700706	19701470	.	-	.	Parent=Os04t0398800-01
Chr04	irgsp1_rep	three_prime_UTR	19698897	19699282	.	-	.	Parent=Os04t0398800-01
Chr04	irgsp1_rep	three_prime_UTR	19698650	19698748	.	-	.	Parent=Os04t0398800-01
Chr04	irgsp1_rep	three_prime_UTR	19697921	19698031	.	-	.	Parent=Os04t0398800-01
Chr04	irgsp1_rep	three_prime_UTR	19697155	19697229	.	-	.	Parent=Os04t0398800-01
Chr04	irgsp1_rep	three_prime_UTR	19696912	19697067	.	-	.	Parent=Os04t0398800-01
Chr04	irgsp1_rep	three_prime_UTR	19696742	19696822	.	-	.	Parent=Os04t0398800-01
Chr04	irgsp1_rep	three_prime_UTR	19696596	19696658	.	-	.	Parent=Os04t0398800-01
Chr04	irgsp1_rep	three_prime_UTR	19696441	19696524	.	-	.	Parent=Os04t0398800-01
Chr04	irgsp1_rep	three_prime_UTR	19695374	19695908	.	-	.	Parent=Os04t0398800-01
Chr04	irgsp1_rep	mRNA	19710926	19711503	.	-	.	ID=Os04t0398900-01;Name=Os04t0398900-01;Locus_id=Os04g0398900;Note=Similar to H0209H04.6 protein.;Transcript_evidence=AK107729 (DDBJ%2C Best hit);ORF_evidence=Q01L32 (UniProt);NIAS_FLcDNA=002-132-F06;Expression=AK107729;TENOR=Os04t0398900-01;KEGG=Os04t0398900-01
Chr04	irgsp1_rep	five_prime_UTR	19711441	19711503	.	-	.	Parent=Os04t0398900-01
Chr04	irgsp1_rep	CDS	19711102	19711440	.	-	0	Parent=Os04t0398900-01
Chr04	irgsp1_rep	three_prime_UTR	19710926	19711101	.	-	.	Parent=Os04t0398900-01
Chr04	irgsp1_rep	mRNA	19710955	19716627	.	+	.	ID=Os04t0399000-00;Name=Os04t0399000-00;Locus_id=Os04g0399000;Note=Similar to Ribosomal protein S27.;Transcript_evidence=EU968795 (DDBJ);ORF_evidence=Q01L31 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S27e (IPR000592),Ribosomal protein%2C zinc-binding domain (IPR011332),Ribosomal protein S27e%2C zinc-binding domain (IPR023407);TENOR=Os04t0399000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	19710955	19711275	.	+	0	Parent=Os04t0399000-00
Chr04	irgsp1_rep	CDS	19712923	19713024	.	+	0	Parent=Os04t0399000-00
Chr04	irgsp1_rep	CDS	19714002	19714030	.	+	0	Parent=Os04t0399000-00
Chr04	irgsp1_rep	CDS	19716501	19716627	.	+	1	Parent=Os04t0399000-00
Chr04	irgsp1_rep	mRNA	19716632	19716949	.	+	.	ID=Os04t0399200-01;Name=Os04t0399200-01;Locus_id=Os04g0399200;Note=Non-protein coding transcript.;Transcript_evidence=AK059683 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-031-H11;TENOR=Os04t0399200-01
Chr04	irgsp1_rep	exon	19716632	19716949	.	+	.	Parent=Os04t0399200-01
Chr04	irgsp1_rep	mRNA	19735871	19739665	.	+	.	ID=Os04t0399300-01;Name=Os04t0399300-01;Locus_id=Os04g0399300;Note=Similar to Nudix hydrolase 13%2C mitochondrial precursor (EC 3.6.1.-) (AtNUDT13).;Transcript_evidence=AK105282 (DDBJ%2C Best hit);ORF_evidence=Q01L30 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=NUDIX hydrolase domain (IPR000086),NUDIX hydrolase domain-like (IPR015797),NUDIX hydrolase%2C conserved site (IPR020084);NIAS_FLcDNA=001-116-D03;Expression=AK105282;TENOR=Os04t0399300-01;KEGG=Os04t0399300-01
Chr04	irgsp1_rep	five_prime_UTR	19735871	19736258	.	+	.	Parent=Os04t0399300-01
Chr04	irgsp1_rep	CDS	19736259	19736474	.	+	0	Parent=Os04t0399300-01
Chr04	irgsp1_rep	CDS	19736634	19736717	.	+	0	Parent=Os04t0399300-01
Chr04	irgsp1_rep	CDS	19738776	19739144	.	+	0	Parent=Os04t0399300-01
Chr04	irgsp1_rep	three_prime_UTR	19739145	19739665	.	+	.	Parent=Os04t0399300-01
Chr04	irgsp1_rep	mRNA	19760417	19771566	.	+	.	ID=Os04t0399600-00;Name=Os04t0399600-00;Locus_id=Os04g0399600;Note=Conserved hypothetical protein.;Transcript_evidence=AK330974 (DDBJ);ORF_evidence=A2XSZ6 (UniProt);TENOR=Os04t0399600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	19760417	19760561	.	+	.	Parent=Os04t0399600-00
Chr04	irgsp1_rep	CDS	19760562	19760568	.	+	0	Parent=Os04t0399600-00
Chr04	irgsp1_rep	CDS	19769918	19770393	.	+	2	Parent=Os04t0399600-00
Chr04	irgsp1_rep	CDS	19770511	19770927	.	+	0	Parent=Os04t0399600-00
Chr04	irgsp1_rep	three_prime_UTR	19770928	19771566	.	+	.	Parent=Os04t0399600-00
Chr04	irgsp1_rep	mRNA	19790424	19791452	.	+	.	ID=Os04t0399800-00;Name=Os04t0399800-00;Locus_id=Os04g0399800;CGSNL Gene Symbol=ERF82;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 82;Oryzabase Gene Symbol Synonym(s)=OsERF#082%2C OsERF082%2C OsERF82%2C AP2/EREBP#035%2C AP2/EREBP35;Oryzabase Gene Name Synonym(s)=ethylene response factor 82%2C APETALA2/ethylene-responsive element binding protein 35;Note=Similar to Ethylene-responsive transcription factor 12 (Ethylene-responsive element binding factor 12) (EREBP-12) (AtERF12).;Transcript_evidence=EU974106 (DDBJ);ORF_evidence=Q01LA7 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);Oryzabase=10589;TENOR=Os04t0399800-00;KEGG=Os04t0399800-00
Chr04	irgsp1_rep	CDS	19790424	19791302	.	+	0	Parent=Os04t0399800-00
Chr04	irgsp1_rep	three_prime_UTR	19791303	19791452	.	+	.	Parent=Os04t0399800-00
Chr04	irgsp1_rep	mRNA	19796632	19800392	.	-	.	ID=Os04t0400000-00;Name=Os04t0400000-00;Locus_id=Os04g0400000;Note=Similar to OSIGBa0113L04.2 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01LA6 (UniProt);TENOR=Os04t0400000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	19800186	19800392	.	-	0	Parent=Os04t0400000-00
Chr04	irgsp1_rep	CDS	19797758	19797845	.	-	0	Parent=Os04t0400000-00
Chr04	irgsp1_rep	CDS	19796632	19797191	.	-	2	Parent=Os04t0400000-00
Chr04	irgsp1_rep	mRNA	19819412	19820288	.	-	.	ID=Os04t0400600-00;Name=Os04t0400600-00;Locus_id=Os04g0400600;Note=Similar to OSIGBa0113L04.4 protein.;Transcript_evidence=CT841782 (DDBJ%2C Best hit);ORF_evidence=Q01LA4 (UniProt);TENOR=Os04t0400600-00;KEGG=Os04t0400600-00
Chr04	irgsp1_rep	five_prime_UTR	19820283	19820288	.	-	.	Parent=Os04t0400600-00
Chr04	irgsp1_rep	CDS	19819617	19820282	.	-	0	Parent=Os04t0400600-00
Chr04	irgsp1_rep	three_prime_UTR	19819412	19819616	.	-	.	Parent=Os04t0400600-00
Chr04	irgsp1_rep	mRNA	19820747	19822949	.	-	.	ID=Os04t0400700-00;Name=Os04t0400700-00;Locus_id=Os04g0400700;Note=Similar to OSIGBa0113L04.5 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01LA3 (UniProt);TENOR=Os04t0400700-00;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	19822868	19822949	.	-	0	Parent=Os04t0400700-00
Chr04	irgsp1_rep	CDS	19822115	19822717	.	-	2	Parent=Os04t0400700-00
Chr04	irgsp1_rep	CDS	19820747	19820775	.	-	2	Parent=Os04t0400700-00
Chr04	irgsp1_rep	mRNA	19826390	19827902	.	-	.	ID=Os04t0400800-01;Name=Os04t0400800-01;Locus_id=Os04g0400800;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK110580 (DDBJ%2C Best hit);ORF_evidence=Q01LA2 (UniProt);NIAS_FLcDNA=002-168-E08;Expression=AK110580;TENOR=Os04t0400800-01;KEGG=Os04t0400800-01
Chr04	irgsp1_rep	five_prime_UTR	19827861	19827902	.	-	.	Parent=Os04t0400800-01
Chr04	irgsp1_rep	CDS	19827779	19827860	.	-	0	Parent=Os04t0400800-01
Chr04	irgsp1_rep	CDS	19826726	19827492	.	-	2	Parent=Os04t0400800-01
Chr04	irgsp1_rep	three_prime_UTR	19826390	19826725	.	-	.	Parent=Os04t0400800-01
Chr04	irgsp1_rep	mRNA	19835206	19836892	.	-	.	ID=Os04t0401000-01;Name=Os04t0401000-01;Locus_id=Os04g0401000;RAP-DB Gene Symbol Synonym(s)=PI21%2C pi21%2C rMg40;RAP-DB Gene Name Synonym(s)=PYRICULARIA ORYZAE RESISTANCE 21%2C Pyricularia oryzae resistance-21 (field resistance)%2C Pyricularia oryzae resistance-21%2C Magnaporthe grisea resistance-21 (field resistance)%2C Magnaporthe grisea resistance-21.;CGSNL Gene Symbol=PI21;CGSNL Gene Name=PYRICULARIA ORYZAE RESISTANCE 21;Oryzabase Gene Symbol Synonym(s)=pi21%2C rMg40%2C OsHMP26%2C HMP26;Oryzabase Gene Name Synonym(s)=Pyricularia oryzae resistance-21 (field resistance)%2C Pyricularia oryzae resistance-21%2C Magnaporthe grisea resistance-21 (field resistance)%2C Magnaporthe grisea resistance-21%2C Heavy metal-associated protein 26;Note=Proline-rich protein%2C Blast resistance;Transcript_evidence=AB430852 (susceptible allele) (DDBJ),AK072320 (susceptible allele) (DDBJ),AK070581 (susceptible allele) (DDBJ),AB430853 (resistant allele) (DDBJ);ORF_evidence=Q7XL73 (susceptible allele) (UniProt),B5UA05 (resistant allele) (UniProt);NIAS_FLcDNA=J023029D20,J023062P06;Manual Curation=May 27%2C 2010;Literature_PMID=19696351;Oryzabase=2057;TENOR=Os04t0401000-01
Chr04	irgsp1_rep	five_prime_UTR	19836806	19836892	.	-	.	Parent=Os04t0401000-01
Chr04	irgsp1_rep	CDS	19836356	19836437	.	-	0	Parent=Os04t0401000-01
Chr04	irgsp1_rep	CDS	19835501	19836219	.	-	2	Parent=Os04t0401000-01
Chr04	irgsp1_rep	three_prime_UTR	19835206	19835500	.	-	.	Parent=Os04t0401000-01
Chr04	irgsp1_rep	mRNA	19835208	19836886	.	-	.	ID=Os04t0401000-02;Name=Os04t0401000-02;Locus_id=Os04g0401000;CGSNL Gene Symbol=PI21;CGSNL Gene Name=PYRICULARIA ORYZAE RESISTANCE 21;Oryzabase Gene Symbol Synonym(s)=pi21%2C rMg40%2C OsHMP26%2C HMP26;Oryzabase Gene Name Synonym(s)=Pyricularia oryzae resistance-21 (field resistance)%2C Pyricularia oryzae resistance-21%2C Magnaporthe grisea resistance-21 (field resistance)%2C Magnaporthe grisea resistance-21%2C Heavy metal-associated protein 26;Note=Similar to Pi21 protein.;Transcript_evidence=AK106153 (DDBJ%2C Best hit);ORF_evidence=B5UA05 (UniProt);NIAS_FLcDNA=001-208-A01;Oryzabase=2057;Expression=AK106153;TENOR=Os04t0401000-02;KEGG=Os04t0401000-02
Chr04	irgsp1_rep	five_prime_UTR	19836806	19836886	.	-	.	Parent=Os04t0401000-02
Chr04	irgsp1_rep	CDS	19836356	19836437	.	-	0	Parent=Os04t0401000-02
Chr04	irgsp1_rep	CDS	19835735	19836219	.	-	2	Parent=Os04t0401000-02
Chr04	irgsp1_rep	CDS	19835501	19835566	.	-	0	Parent=Os04t0401000-02
Chr04	irgsp1_rep	three_prime_UTR	19835208	19835500	.	-	.	Parent=Os04t0401000-02
Chr04	irgsp1_rep	mRNA	19841573	19844276	.	-	.	ID=Os04t0401100-01;Name=Os04t0401100-01;Locus_id=Os04g0401100;Note=Similar to OSIGBa0113L04.8 protein.;Transcript_evidence=AK061279 (DDBJ%2C Best hit);ORF_evidence=Q01LA0 (UniProt);NIAS_FLcDNA=006-212-F04;TENOR=Os04t0401100-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	19844124	19844276	.	-	.	Parent=Os04t0401100-01
Chr04	irgsp1_rep	CDS	19842589	19842670	.	-	0	Parent=Os04t0401100-01
Chr04	irgsp1_rep	CDS	19841797	19842260	.	-	2	Parent=Os04t0401100-01
Chr04	irgsp1_rep	three_prime_UTR	19841573	19841796	.	-	.	Parent=Os04t0401100-01
Chr04	irgsp1_rep	mRNA	19849117	19850578	.	+	.	ID=Os04t0401200-00;Name=Os04t0401200-00;Locus_id=Os04g0401200;Note=Similar to OSIGBa0155K12.4 protein.;Transcript_evidence=AK374516 (DDBJ);ORF_evidence=Q7XV94 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os04t0401200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	19849117	19849117	.	+	.	Parent=Os04t0401200-00
Chr04	irgsp1_rep	CDS	19849118	19850578	.	+	0	Parent=Os04t0401200-00
Chr04	irgsp1_rep	mRNA	19851402	19859052	.	-	.	ID=Os04t0401300-01;Name=Os04t0401300-01;Locus_id=Os04g0401300;Oryzabase Gene Symbol Synonym(s)=OsCBSCBS4%2C OsCBSCBS4a%2C OsCBSCBS4b%2C OsCBSCBS4c%2C OsCBSCBS4d%2C OsCBSCBS4e;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSCBS4%2C CBS domain containing protein OsCBSCBS4;Note=Similar to OSIGBa0155K12.5 protein.;Transcript_evidence=AK121122 (DDBJ%2C Best hit);ORF_evidence=Q01LG9 (UniProt);NIAS_FLcDNA=J023074I17;Oryzabase=10349;TENOR=Os04t0401300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	19858667	19859052	.	-	.	Parent=Os04t0401300-01
Chr04	irgsp1_rep	CDS	19858599	19858666	.	-	0	Parent=Os04t0401300-01
Chr04	irgsp1_rep	CDS	19858352	19858427	.	-	1	Parent=Os04t0401300-01
Chr04	irgsp1_rep	CDS	19855821	19856054	.	-	0	Parent=Os04t0401300-01
Chr04	irgsp1_rep	three_prime_UTR	19855670	19855820	.	-	.	Parent=Os04t0401300-01
Chr04	irgsp1_rep	three_prime_UTR	19855536	19855595	.	-	.	Parent=Os04t0401300-01
Chr04	irgsp1_rep	three_prime_UTR	19855059	19855148	.	-	.	Parent=Os04t0401300-01
Chr04	irgsp1_rep	three_prime_UTR	19854856	19854987	.	-	.	Parent=Os04t0401300-01
Chr04	irgsp1_rep	three_prime_UTR	19854248	19854389	.	-	.	Parent=Os04t0401300-01
Chr04	irgsp1_rep	three_prime_UTR	19853974	19854147	.	-	.	Parent=Os04t0401300-01
Chr04	irgsp1_rep	three_prime_UTR	19852787	19852850	.	-	.	Parent=Os04t0401300-01
Chr04	irgsp1_rep	three_prime_UTR	19852544	19852613	.	-	.	Parent=Os04t0401300-01
Chr04	irgsp1_rep	three_prime_UTR	19851691	19851790	.	-	.	Parent=Os04t0401300-01
Chr04	irgsp1_rep	three_prime_UTR	19851402	19851575	.	-	.	Parent=Os04t0401300-01
Chr04	irgsp1_rep	mRNA	19865447	19867384	.	-	.	ID=Os04t0401400-01;Name=Os04t0401400-01;Locus_id=Os04g0401400;Note=Similar to retrotransposon protein.;Transcript_evidence=AK070418 (DDBJ%2C Best hit);ORF_evidence=NP_001149744.1 (RefSeq);GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Putative harbinger transposase-derived nuclease (IPR006912);NIAS_FLcDNA=J023049E23;TENOR=Os04t0401400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	19867071	19867384	.	-	.	Parent=Os04t0401400-01
Chr04	irgsp1_rep	five_prime_UTR	19866384	19866894	.	-	.	Parent=Os04t0401400-01
Chr04	irgsp1_rep	five_prime_UTR	19866071	19866296	.	-	.	Parent=Os04t0401400-01
Chr04	irgsp1_rep	five_prime_UTR	19865854	19865986	.	-	.	Parent=Os04t0401400-01
Chr04	irgsp1_rep	CDS	19865605	19865853	.	-	0	Parent=Os04t0401400-01
Chr04	irgsp1_rep	three_prime_UTR	19865447	19865604	.	-	.	Parent=Os04t0401400-01
Chr04	irgsp1_rep	mRNA	19886674	19892355	.	+	.	ID=Os04t0401700-01;Name=Os04t0401700-01;Locus_id=Os04g0401700;RAP-DB Gene Symbol Synonym(s)=HAK1%2C OsHAK1;RAP-DB Gene Name Synonym(s)=HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 1%2C High-affinity Potassium(K+) Transporter 1%2C Potassium transporter 1;CGSNL Gene Symbol=LCS;CGSNL Gene Name=LOW CS ACCUMULATION;Oryzabase Gene Symbol Synonym(s)=OsHAK1%2C HAK1;Oryzabase Gene Name Synonym(s)=High-affinity Potassium(K+) Transporter 1%2C Potassium transporter 1%2C low Cs accumulation;Note=Potassium transporter%2C Potassium mediated growth%2C Salt tolerance;Transcript_evidence=AK101722,AK119883,AK119891,AJ427970 (partial);ORF_evidence=Q6VVA6-2;GO=Biological Process: potassium ion transmembrane transport (GO:0071805),Molecular Function: potassium ion transmembrane transporter activity (GO:0015079),Cellular Component: membrane (GO:0016020);InterPro=Potassium transporter (IPR003855);NIAS_FLcDNA=J033061B08, 002-179-G11, 002-180-A07;Manual Curation=June 8%2C 2015;Literature_PMID=26046301,12376644;Oryzabase=8655;TENOR=Os04t0401700-01
Chr04	irgsp1_rep	five_prime_UTR	19886674	19886901	.	+	.	Parent=Os04t0401700-01
Chr04	irgsp1_rep	five_prime_UTR	19888191	19888243	.	+	.	Parent=Os04t0401700-01
Chr04	irgsp1_rep	CDS	19888244	19888613	.	+	0	Parent=Os04t0401700-01
Chr04	irgsp1_rep	CDS	19888708	19888956	.	+	2	Parent=Os04t0401700-01
Chr04	irgsp1_rep	CDS	19889293	19889343	.	+	2	Parent=Os04t0401700-01
Chr04	irgsp1_rep	CDS	19889450	19889710	.	+	2	Parent=Os04t0401700-01
Chr04	irgsp1_rep	CDS	19889870	19889922	.	+	2	Parent=Os04t0401700-01
Chr04	irgsp1_rep	CDS	19890189	19890300	.	+	0	Parent=Os04t0401700-01
Chr04	irgsp1_rep	CDS	19890412	19890669	.	+	2	Parent=Os04t0401700-01
Chr04	irgsp1_rep	CDS	19891059	19892083	.	+	2	Parent=Os04t0401700-01
Chr04	irgsp1_rep	three_prime_UTR	19892084	19892355	.	+	.	Parent=Os04t0401700-01
Chr04	irgsp1_rep	mRNA	19886676	19892355	.	+	.	ID=Os04t0401700-02;Name=Os04t0401700-02;Locus_id=Os04g0401700;CGSNL Gene Symbol=LCS;CGSNL Gene Name=LOW CS ACCUMULATION;Oryzabase Gene Symbol Synonym(s)=OsHAK1%2C HAK1;Oryzabase Gene Name Synonym(s)=High-affinity Potassium(K+) Transporter 1%2C Potassium transporter 1%2C low Cs accumulation;Note=Similar to Isoform 2 of Potassium transporter 1.;Transcript_evidence=AK105723 (DDBJ%2C Best hit);ORF_evidence=Q6VVA6-2 (UniProt);GO=Biological Process: potassium ion transmembrane transport (GO:0071805),Cellular Component: membrane (GO:0016020),Molecular Function: potassium ion transmembrane transporter activity (GO:0015079);InterPro=K+ potassium transporter (IPR003855);NIAS_FLcDNA=001-201-G03;Oryzabase=8655;Expression=AK105723;TENOR=Os04t0401700-02;KEGG=Os04t0401700-02
Chr04	irgsp1_rep	five_prime_UTR	19886676	19886854	.	+	.	Parent=Os04t0401700-02
Chr04	irgsp1_rep	CDS	19886855	19886901	.	+	0	Parent=Os04t0401700-02
Chr04	irgsp1_rep	CDS	19888191	19888332	.	+	1	Parent=Os04t0401700-02
Chr04	irgsp1_rep	CDS	19889295	19889343	.	+	0	Parent=Os04t0401700-02
Chr04	irgsp1_rep	CDS	19889450	19889710	.	+	2	Parent=Os04t0401700-02
Chr04	irgsp1_rep	CDS	19889870	19889922	.	+	2	Parent=Os04t0401700-02
Chr04	irgsp1_rep	CDS	19890189	19890300	.	+	0	Parent=Os04t0401700-02
Chr04	irgsp1_rep	CDS	19890412	19890669	.	+	2	Parent=Os04t0401700-02
Chr04	irgsp1_rep	CDS	19891059	19892083	.	+	2	Parent=Os04t0401700-02
Chr04	irgsp1_rep	three_prime_UTR	19892084	19892355	.	+	.	Parent=Os04t0401700-02
Chr04	irgsp1_rep	mRNA	19887940	19892333	.	+	.	ID=Os04t0401700-03;Name=Os04t0401700-03;Locus_id=Os04g0401700;CGSNL Gene Symbol=LCS;CGSNL Gene Name=LOW CS ACCUMULATION;Oryzabase Gene Symbol Synonym(s)=OsHAK1%2C HAK1;Oryzabase Gene Name Synonym(s)=High-affinity Potassium(K+) Transporter 1%2C Potassium transporter 1%2C low Cs accumulation;Note=Potassium transporter 1 (OsHAK1). Splice isoform 2.;Transcript_evidence=AK100669 (DDBJ%2C Best hit);ORF_evidence=Q6VVA6-2 (UniProt);GO=Biological Process: potassium ion transmembrane transport (GO:0071805),Cellular Component: membrane (GO:0016020),Molecular Function: potassium ion transmembrane transporter activity (GO:0015079);InterPro=K+ potassium transporter (IPR003855);NIAS_FLcDNA=J023112J06;Oryzabase=8655;Expression=AK100669;TENOR=Os04t0401700-03;KEGG=Os04t0401700-03
Chr04	irgsp1_rep	five_prime_UTR	19887940	19888243	.	+	.	Parent=Os04t0401700-03
Chr04	irgsp1_rep	CDS	19888244	19888613	.	+	0	Parent=Os04t0401700-03
Chr04	irgsp1_rep	CDS	19888708	19888956	.	+	2	Parent=Os04t0401700-03
Chr04	irgsp1_rep	CDS	19889293	19889343	.	+	2	Parent=Os04t0401700-03
Chr04	irgsp1_rep	CDS	19889450	19889710	.	+	2	Parent=Os04t0401700-03
Chr04	irgsp1_rep	CDS	19889870	19889922	.	+	2	Parent=Os04t0401700-03
Chr04	irgsp1_rep	CDS	19890189	19890300	.	+	0	Parent=Os04t0401700-03
Chr04	irgsp1_rep	CDS	19890412	19890669	.	+	2	Parent=Os04t0401700-03
Chr04	irgsp1_rep	CDS	19891059	19892083	.	+	2	Parent=Os04t0401700-03
Chr04	irgsp1_rep	three_prime_UTR	19892084	19892333	.	+	.	Parent=Os04t0401700-03
Chr04	irgsp1_rep	mRNA	19890377	19892084	.	-	.	ID=Os04t0401751-00;Name=Os04t0401751-00;Locus_id=Os04g0401751;Note=Hypothetical protein.;Transcript_evidence=EU967027 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0401751-00
Chr04	irgsp1_rep	five_prime_UTR	19891688	19892084	.	-	.	Parent=Os04t0401751-00
Chr04	irgsp1_rep	CDS	19891043	19891687	.	-	0	Parent=Os04t0401751-00
Chr04	irgsp1_rep	three_prime_UTR	19891041	19891042	.	-	.	Parent=Os04t0401751-00
Chr04	irgsp1_rep	three_prime_UTR	19890377	19890726	.	-	.	Parent=Os04t0401751-00
Chr04	irgsp1_rep	mRNA	19893402	19896710	.	-	.	ID=Os04t0401800-01;Name=Os04t0401800-01;Locus_id=Os04g0401800;Note=DNA repair metallo-beta-lactamase domain containing protein.;Transcript_evidence=AK103868 (DDBJ%2C Best hit);ORF_evidence=Q01LG7 (UniProt);InterPro=DNA repair metallo-beta-lactamase (IPR011084);NIAS_FLcDNA=J033149H08;Expression=AK103868;TENOR=Os04t0401800-01;KEGG=Os04t0401800-01
Chr04	irgsp1_rep	five_prime_UTR	19896676	19896710	.	-	.	Parent=Os04t0401800-01
Chr04	irgsp1_rep	CDS	19896231	19896675	.	-	0	Parent=Os04t0401800-01
Chr04	irgsp1_rep	CDS	19895756	19895936	.	-	2	Parent=Os04t0401800-01
Chr04	irgsp1_rep	CDS	19895431	19895670	.	-	1	Parent=Os04t0401800-01
Chr04	irgsp1_rep	CDS	19895216	19895360	.	-	1	Parent=Os04t0401800-01
Chr04	irgsp1_rep	CDS	19894895	19895029	.	-	0	Parent=Os04t0401800-01
Chr04	irgsp1_rep	CDS	19894752	19894818	.	-	0	Parent=Os04t0401800-01
Chr04	irgsp1_rep	CDS	19894592	19894669	.	-	2	Parent=Os04t0401800-01
Chr04	irgsp1_rep	CDS	19894066	19894118	.	-	2	Parent=Os04t0401800-01
Chr04	irgsp1_rep	CDS	19893882	19893983	.	-	0	Parent=Os04t0401800-01
Chr04	irgsp1_rep	three_prime_UTR	19893827	19893881	.	-	.	Parent=Os04t0401800-01
Chr04	irgsp1_rep	three_prime_UTR	19893402	19893728	.	-	.	Parent=Os04t0401800-01
Chr04	irgsp1_rep	mRNA	19900237	19901511	.	-	.	ID=Os04t0401900-01;Name=Os04t0401900-01;Locus_id=Os04g0401900;Note=Conserved hypothetical protein.;Transcript_evidence=AK105362 (DDBJ%2C Best hit);ORF_evidence=Q7XV87 (UniProt);NIAS_FLcDNA=001-119-E06;Expression=AK105362;TENOR=Os04t0401900-01;KEGG=Os04t0401900-01
Chr04	irgsp1_rep	five_prime_UTR	19901510	19901511	.	-	.	Parent=Os04t0401900-01
Chr04	irgsp1_rep	CDS	19900571	19901509	.	-	0	Parent=Os04t0401900-01
Chr04	irgsp1_rep	three_prime_UTR	19900237	19900570	.	-	.	Parent=Os04t0401900-01
Chr04	irgsp1_rep	mRNA	19913312	19916747	.	-	.	ID=Os04t0402100-01;Name=Os04t0402100-01;Locus_id=Os04g0402100;CGSNL Gene Symbol=CNX;CGSNL Gene Name=CALNEXIN;Oryzabase Gene Symbol Synonym(s)=OsCNX%2C OsCNX1%2C CNX1;Oryzabase Gene Name Synonym(s)=Calnexin;Note=Similar to Calnexin (Fragment).;Transcript_evidence=AK069118 (DDBJ%2C Best hit);ORF_evidence=C5ML26 (UniProt);GO=Biological Process: protein folding (GO:0006457),Cellular Component: endoplasmic reticulum (GO:0005783),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Calreticulin/calnexin (IPR001580),Concanavalin A-like lectin/glucanase (IPR008985),Calreticulin/calnexin%2C P (IPR009033),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Calreticulin/calnexin%2C conserved site (IPR018124);NIAS_FLcDNA=J023008D14;Oryzabase=10088;Expression=AK069118;TENOR=Os04t0402100-01;KEGG=Os04t0402100-01
Chr04	irgsp1_rep	five_prime_UTR	19916643	19916747	.	-	.	Parent=Os04t0402100-01
Chr04	irgsp1_rep	CDS	19916568	19916642	.	-	0	Parent=Os04t0402100-01
Chr04	irgsp1_rep	CDS	19916382	19916451	.	-	0	Parent=Os04t0402100-01
Chr04	irgsp1_rep	CDS	19914307	19915436	.	-	2	Parent=Os04t0402100-01
Chr04	irgsp1_rep	CDS	19914124	19914195	.	-	0	Parent=Os04t0402100-01
Chr04	irgsp1_rep	CDS	19913891	19914007	.	-	0	Parent=Os04t0402100-01
Chr04	irgsp1_rep	CDS	19913651	19913800	.	-	0	Parent=Os04t0402100-01
Chr04	irgsp1_rep	three_prime_UTR	19913312	19913650	.	-	.	Parent=Os04t0402100-01
Chr04	irgsp1_rep	mRNA	19913312	19914570	.	-	.	ID=Os04t0402100-02;Name=Os04t0402100-02;Locus_id=Os04g0402100;CGSNL Gene Symbol=CNX;CGSNL Gene Name=CALNEXIN;Oryzabase Gene Symbol Synonym(s)=OsCNX%2C OsCNX1%2C CNX1;Oryzabase Gene Name Synonym(s)=Calnexin;Note=Similar to calnexin.;Transcript_evidence=AK061185 (DDBJ%2C Best hit);ORF_evidence=C5ML26 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calreticulin/calnexin (IPR001580);NIAS_FLcDNA=006-209-E03;Oryzabase=10088;Expression=AK061185;TENOR=Os04t0402100-02;KEGG=Os04t0402100-02
Chr04	irgsp1_rep	CDS	19914307	19914570	.	-	0	Parent=Os04t0402100-02
Chr04	irgsp1_rep	CDS	19914124	19914195	.	-	0	Parent=Os04t0402100-02
Chr04	irgsp1_rep	CDS	19913891	19914007	.	-	0	Parent=Os04t0402100-02
Chr04	irgsp1_rep	CDS	19913651	19913800	.	-	0	Parent=Os04t0402100-02
Chr04	irgsp1_rep	three_prime_UTR	19913312	19913650	.	-	.	Parent=Os04t0402100-02
Chr04	irgsp1_rep	mRNA	19921005	19929376	.	-	.	ID=Os04t0402200-00;Name=Os04t0402200-00;Locus_id=Os04g0402200;Note=Similar to RNA binding protein Rp120.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7X6J0 (UniProt);GO=Biological Process: gene silencing by RNA (GO:0031047),Cellular Component: RNA-induced silencing complex (GO:0016442),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Tudor domain (IPR002999),Staphylococcal nuclease (SNase-like) (IPR006021),Maternal tudor protein (IPR008191),Staphylococcal nuclease (SNase-like)%2C OB-fold (IPR016071),RNA-induced silencing complex%2C nuclease component Tudor-SN (IPR016685),Tudor subgroup (IPR018351);TENOR=Os04t0402200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	19929209	19929376	.	-	0	Parent=Os04t0402200-00
Chr04	irgsp1_rep	CDS	19928157	19928345	.	-	0	Parent=Os04t0402200-00
Chr04	irgsp1_rep	CDS	19927928	19928029	.	-	0	Parent=Os04t0402200-00
Chr04	irgsp1_rep	CDS	19927536	19927742	.	-	0	Parent=Os04t0402200-00
Chr04	irgsp1_rep	CDS	19926866	19927078	.	-	0	Parent=Os04t0402200-00
Chr04	irgsp1_rep	CDS	19926621	19926728	.	-	0	Parent=Os04t0402200-00
Chr04	irgsp1_rep	CDS	19926366	19926536	.	-	0	Parent=Os04t0402200-00
Chr04	irgsp1_rep	CDS	19925597	19925797	.	-	0	Parent=Os04t0402200-00
Chr04	irgsp1_rep	CDS	19925098	19925463	.	-	0	Parent=Os04t0402200-00
Chr04	irgsp1_rep	CDS	19924205	19924432	.	-	0	Parent=Os04t0402200-00
Chr04	irgsp1_rep	CDS	19922737	19922922	.	-	0	Parent=Os04t0402200-00
Chr04	irgsp1_rep	CDS	19922563	19922631	.	-	0	Parent=Os04t0402200-00
Chr04	irgsp1_rep	CDS	19922129	19922482	.	-	0	Parent=Os04t0402200-00
Chr04	irgsp1_rep	CDS	19921652	19922023	.	-	0	Parent=Os04t0402200-00
Chr04	irgsp1_rep	CDS	19921005	19921241	.	-	0	Parent=Os04t0402200-00
Chr04	irgsp1_rep	mRNA	19924408	19928041	.	+	.	ID=Os04t0402250-01;Name=Os04t0402250-01;Locus_id=Os04g0402250;Note=Conserved hypothetical protein.;Transcript_evidence=AK243013 (DDBJ%2C Best hit);ORF_evidence=NP_001173919.1 (RefSeq);NIAS_FLcDNA=J090098F15;TENOR=Os04t0402250-01;KEGG=Os04t0402250-01
Chr04	irgsp1_rep	five_prime_UTR	19924408	19927475	.	+	.	Parent=Os04t0402250-01
Chr04	irgsp1_rep	CDS	19927476	19927721	.	+	0	Parent=Os04t0402250-01
Chr04	irgsp1_rep	three_prime_UTR	19927722	19928041	.	+	.	Parent=Os04t0402250-01
Chr04	irgsp1_rep	mRNA	19933241	19937491	.	+	.	ID=Os04t0402300-00;Name=Os04t0402300-00;Locus_id=Os04g0402300;Note=Similar to Cysteine-type peptidase.;Transcript_evidence=CT835031 (DDBJ%2C Best hit);ORF_evidence=B6STB5 (UniProt);InterPro=Ovarian tumour%2C otubain (IPR003323);TENOR=Os04t0402300-00;KEGG=Os04t0402300-00
Chr04	irgsp1_rep	five_prime_UTR	19933241	19933372	.	+	.	Parent=Os04t0402300-00
Chr04	irgsp1_rep	five_prime_UTR	19934586	19934592	.	+	.	Parent=Os04t0402300-00
Chr04	irgsp1_rep	CDS	19934593	19934760	.	+	0	Parent=Os04t0402300-00
Chr04	irgsp1_rep	CDS	19934891	19934964	.	+	0	Parent=Os04t0402300-00
Chr04	irgsp1_rep	CDS	19935546	19935600	.	+	1	Parent=Os04t0402300-00
Chr04	irgsp1_rep	CDS	19935706	19935780	.	+	0	Parent=Os04t0402300-00
Chr04	irgsp1_rep	CDS	19936033	19936106	.	+	0	Parent=Os04t0402300-00
Chr04	irgsp1_rep	CDS	19936204	19936252	.	+	1	Parent=Os04t0402300-00
Chr04	irgsp1_rep	CDS	19936594	19936678	.	+	0	Parent=Os04t0402300-00
Chr04	irgsp1_rep	CDS	19936930	19936986	.	+	2	Parent=Os04t0402300-00
Chr04	irgsp1_rep	CDS	19937098	19937147	.	+	2	Parent=Os04t0402300-00
Chr04	irgsp1_rep	three_prime_UTR	19937148	19937491	.	+	.	Parent=Os04t0402300-00
Chr04	irgsp1_rep	mRNA	19941027	19942075	.	-	.	ID=Os04t0402500-00;Name=Os04t0402500-00;Locus_id=Os04g0402500;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8Q8A9 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841);TENOR=Os04t0402500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	19941653	19942075	.	-	0	Parent=Os04t0402500-00
Chr04	irgsp1_rep	CDS	19941027	19941554	.	-	0	Parent=Os04t0402500-00
Chr04	irgsp1_rep	mRNA	19962993	19963556	.	+	.	ID=Os04t0402700-01;Name=Os04t0402700-01;Locus_id=Os04g0402700;Note=Hypothetical protein.;Transcript_evidence=AK058995 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-020-G02;Expression=AK058995;TENOR=Os04t0402700-01;KEGG=Os04t0402700-01
Chr04	irgsp1_rep	five_prime_UTR	19962993	19963064	.	+	.	Parent=Os04t0402700-01
Chr04	irgsp1_rep	CDS	19963065	19963337	.	+	0	Parent=Os04t0402700-01
Chr04	irgsp1_rep	three_prime_UTR	19963338	19963556	.	+	.	Parent=Os04t0402700-01
Chr04	irgsp1_rep	mRNA	19994477	19996158	.	+	.	ID=Os04t0403200-01;Name=Os04t0403200-01;Locus_id=Os04g0403200;Oryzabase Gene Symbol Synonym(s)=SIP23;Oryzabase Gene Name Synonym(s)=SKIP interacting protein 23%2C SKIPa-interacting protein 23%2C SKIPa-interacting protein 23;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=AK120702 (DDBJ%2C Best hit);ORF_evidence=B8Q8A9 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841);NIAS_FLcDNA=J013170O17;Oryzabase=9955;Expression=AK120702;TENOR=Os04t0403200-01;KEGG=Os04t0403200-01
Chr04	irgsp1_rep	five_prime_UTR	19994477	19994570	.	+	.	Parent=Os04t0403200-01
Chr04	irgsp1_rep	CDS	19994571	19994632	.	+	0	Parent=Os04t0403200-01
Chr04	irgsp1_rep	CDS	19994713	19995136	.	+	1	Parent=Os04t0403200-01
Chr04	irgsp1_rep	CDS	19995231	19995788	.	+	0	Parent=Os04t0403200-01
Chr04	irgsp1_rep	three_prime_UTR	19995789	19996158	.	+	.	Parent=Os04t0403200-01
Chr04	irgsp1_rep	mRNA	20009203	20009525	.	+	.	ID=Os04t0403300-00;Name=Os04t0403300-00;Locus_id=Os04g0403300;Note=Similar to Alpha-amylase.;Transcript_evidence=CT836492 (DDBJ%2C Best hit);ORF_evidence=C3W8N1 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: alpha-amylase activity (GO:0004556),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: cation binding (GO:0043169);InterPro=Alpha-amylase%2C C-terminal beta-sheet (IPR012850),Glycosyl hydrolase%2C family 13%2C all-beta (IPR013780);TENOR=Os04t0403300-00;KEGG=Os04t0403300-00
Chr04	irgsp1_rep	five_prime_UTR	20009203	20009204	.	+	.	Parent=Os04t0403300-00
Chr04	irgsp1_rep	CDS	20009205	20009276	.	+	0	Parent=Os04t0403300-00
Chr04	irgsp1_rep	three_prime_UTR	20009277	20009525	.	+	.	Parent=Os04t0403300-00
Chr04	irgsp1_rep	mRNA	20009913	20015529	.	+	.	ID=Os04t0403400-01;Name=Os04t0403400-01;Locus_id=Os04g0403400;Oryzabase Gene Name Synonym(s)=Tyrosyl-DNA phosphodiesterase family protein;Note=Tyrosyl-DNA phosphodiesterase family protein.;Transcript_evidence=AK120071 (DDBJ%2C Best hit);ORF_evidence=B9FEZ9 (UniProt);GO=Biological Process: DNA repair (GO:0006281),Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: phosphoric diester hydrolase activity (GO:0008081),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides (GO:0016818);InterPro=Tyrosyl-DNA phosphodiesterase (IPR010347),HIP116%2C Rad5p N-terminal (IPR014905);NIAS_FLcDNA=J013005I06;Oryzabase=20453;Expression=AK120071;TENOR=Os04t0403400-01;KEGG=Os04t0403400-01
Chr04	irgsp1_rep	five_prime_UTR	20009913	20009938	.	+	.	Parent=Os04t0403400-01
Chr04	irgsp1_rep	CDS	20009939	20010930	.	+	0	Parent=Os04t0403400-01
Chr04	irgsp1_rep	CDS	20011030	20011164	.	+	1	Parent=Os04t0403400-01
Chr04	irgsp1_rep	CDS	20011277	20011421	.	+	1	Parent=Os04t0403400-01
Chr04	irgsp1_rep	CDS	20011578	20011859	.	+	0	Parent=Os04t0403400-01
Chr04	irgsp1_rep	CDS	20012092	20012353	.	+	0	Parent=Os04t0403400-01
Chr04	irgsp1_rep	CDS	20012501	20012667	.	+	2	Parent=Os04t0403400-01
Chr04	irgsp1_rep	CDS	20012758	20012868	.	+	0	Parent=Os04t0403400-01
Chr04	irgsp1_rep	CDS	20013784	20013835	.	+	0	Parent=Os04t0403400-01
Chr04	irgsp1_rep	CDS	20013918	20014027	.	+	2	Parent=Os04t0403400-01
Chr04	irgsp1_rep	CDS	20014137	20014265	.	+	0	Parent=Os04t0403400-01
Chr04	irgsp1_rep	CDS	20014564	20014653	.	+	0	Parent=Os04t0403400-01
Chr04	irgsp1_rep	CDS	20014743	20015303	.	+	0	Parent=Os04t0403400-01
Chr04	irgsp1_rep	three_prime_UTR	20015304	20015529	.	+	.	Parent=Os04t0403400-01
Chr04	irgsp1_rep	mRNA	20013903	20014348	.	-	.	ID=Os04t0403450-00;Name=Os04t0403450-00;Locus_id=Os04g0403450;Note=Non-protein coding transcript.;Transcript_evidence=BT086661 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0403450-00
Chr04	irgsp1_rep	exon	20014135	20014348	.	-	.	Parent=Os04t0403450-00
Chr04	irgsp1_rep	exon	20013903	20014025	.	-	.	Parent=Os04t0403450-00
Chr04	irgsp1_rep	mRNA	20015782	20019552	.	+	.	ID=Os04t0403500-01;Name=Os04t0403500-01;Locus_id=Os04g0403500;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK058428 (DDBJ%2C Best hit),AK099117 (DDBJ%2C Best hit);ORF_evidence=B6TV09 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-015-E08,J023036D02;TENOR=Os04t0403500-01
Chr04	irgsp1_rep	five_prime_UTR	20015782	20015926	.	+	.	Parent=Os04t0403500-01
Chr04	irgsp1_rep	CDS	20015927	20016075	.	+	0	Parent=Os04t0403500-01
Chr04	irgsp1_rep	CDS	20016176	20016264	.	+	1	Parent=Os04t0403500-01
Chr04	irgsp1_rep	CDS	20016364	20016454	.	+	2	Parent=Os04t0403500-01
Chr04	irgsp1_rep	CDS	20016918	20016973	.	+	1	Parent=Os04t0403500-01
Chr04	irgsp1_rep	CDS	20017583	20017729	.	+	2	Parent=Os04t0403500-01
Chr04	irgsp1_rep	CDS	20018848	20018973	.	+	2	Parent=Os04t0403500-01
Chr04	irgsp1_rep	CDS	20019051	20019331	.	+	2	Parent=Os04t0403500-01
Chr04	irgsp1_rep	three_prime_UTR	20019332	20019552	.	+	.	Parent=Os04t0403500-01
Chr04	irgsp1_rep	mRNA	20015834	20019593	.	+	.	ID=Os04t0403500-02;Name=Os04t0403500-02;Locus_id=Os04g0403500;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK103149 (DDBJ%2C Best hit);ORF_evidence=B6TV09 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033120N14;Expression=AK103149;TENOR=Os04t0403500-02;KEGG=Os04t0403500-02
Chr04	irgsp1_rep	five_prime_UTR	20015834	20015926	.	+	.	Parent=Os04t0403500-02
Chr04	irgsp1_rep	CDS	20015927	20016075	.	+	0	Parent=Os04t0403500-02
Chr04	irgsp1_rep	CDS	20016176	20016264	.	+	1	Parent=Os04t0403500-02
Chr04	irgsp1_rep	CDS	20016364	20016454	.	+	2	Parent=Os04t0403500-02
Chr04	irgsp1_rep	CDS	20016918	20016973	.	+	1	Parent=Os04t0403500-02
Chr04	irgsp1_rep	CDS	20017583	20017729	.	+	2	Parent=Os04t0403500-02
Chr04	irgsp1_rep	CDS	20018848	20018973	.	+	2	Parent=Os04t0403500-02
Chr04	irgsp1_rep	CDS	20019051	20019331	.	+	2	Parent=Os04t0403500-02
Chr04	irgsp1_rep	three_prime_UTR	20019332	20019593	.	+	.	Parent=Os04t0403500-02
Chr04	irgsp1_rep	mRNA	20020086	20020399	.	-	.	ID=Os04t0403600-00;Name=Os04t0403600-00;Locus_id=Os04g0403600;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0006a06 (Wheat FLcDNA);ORF_evidence=NP_001052700.2 (RefSeq);TENOR=Os04t0403600-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	20020356	20020399	.	-	.	Parent=Os04t0403600-00
Chr04	irgsp1_rep	CDS	20020086	20020355	.	-	0	Parent=Os04t0403600-00
Chr04	irgsp1_rep	mRNA	20021226	20025141	.	-	.	ID=Os04t0403701-01;Name=Os04t0403701-01;Locus_id=Os04g0403701;Oryzabase Gene Symbol Synonym(s)=OsPP2C39%2C PP2C39%2C OsPP64;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C39%2C protein phosphatase 2C 39%2C protein phosphatase 64;Note=Similar to protein phosphatase 2C containing protein.;Transcript_evidence=AK243107 (DDBJ%2C Best hit);ORF_evidence=B6T998 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J100026E01;Oryzabase=17913;TENOR=Os04t0403701-01;KEGG=Os04t0403701-01 (EC:3.1.3.43)
Chr04	irgsp1_rep	five_prime_UTR	20024687	20025141	.	-	.	Parent=Os04t0403701-01
Chr04	irgsp1_rep	five_prime_UTR	20024448	20024576	.	-	.	Parent=Os04t0403701-01
Chr04	irgsp1_rep	five_prime_UTR	20023525	20023656	.	-	.	Parent=Os04t0403701-01
Chr04	irgsp1_rep	CDS	20022355	20023524	.	-	0	Parent=Os04t0403701-01
Chr04	irgsp1_rep	CDS	20021994	20022258	.	-	0	Parent=Os04t0403701-01
Chr04	irgsp1_rep	CDS	20021566	20021693	.	-	2	Parent=Os04t0403701-01
Chr04	irgsp1_rep	three_prime_UTR	20021226	20021565	.	-	.	Parent=Os04t0403701-01
Chr04	irgsp1_rep	mRNA	20046002	20046917	.	-	.	ID=Os04t0403900-00;Name=Os04t0403900-00;Locus_id=Os04g0403900;Note=Similar to H0502B11.1 protein.;Transcript_evidence=CT836501 (DDBJ%2C Best hit);ORF_evidence=Q01L50 (UniProt);TENOR=Os04t0403900-00;KEGG=Os04t0403900-00
Chr04	irgsp1_rep	five_prime_UTR	20046856	20046917	.	-	.	Parent=Os04t0403900-00
Chr04	irgsp1_rep	five_prime_UTR	20046602	20046622	.	-	.	Parent=Os04t0403900-00
Chr04	irgsp1_rep	CDS	20046275	20046601	.	-	0	Parent=Os04t0403900-00
Chr04	irgsp1_rep	three_prime_UTR	20046002	20046274	.	-	.	Parent=Os04t0403900-00
Chr04	irgsp1_rep	mRNA	20047576	20048091	.	+	.	ID=Os04t0404000-01;Name=Os04t0404000-01;Locus_id=Os04g0404000;Note=Hypothetical gene.;Transcript_evidence=AK107819 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-133-F11;Expression=AK107819;TENOR=Os04t0404000-01;KEGG=Os04t0404000-01
Chr04	irgsp1_rep	five_prime_UTR	20047576	20047576	.	+	.	Parent=Os04t0404000-01
Chr04	irgsp1_rep	CDS	20047577	20047945	.	+	0	Parent=Os04t0404000-01
Chr04	irgsp1_rep	three_prime_UTR	20047946	20048091	.	+	.	Parent=Os04t0404000-01
Chr04	irgsp1_rep	mRNA	20057376	20057910	.	-	.	ID=Os04t0404100-00;Name=Os04t0404100-00;Locus_id=Os04g0404100;Note=Hypothetical protein.;Transcript_evidence=EU952888 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0404100-00
Chr04	irgsp1_rep	five_prime_UTR	20057909	20057910	.	-	.	Parent=Os04t0404100-00
Chr04	irgsp1_rep	CDS	20057376	20057908	.	-	0	Parent=Os04t0404100-00
Chr04	irgsp1_rep	mRNA	20065198	20066517	.	-	.	ID=Os04t0404400-01;Name=Os04t0404400-01;Locus_id=Os04g0404400;Oryzabase Gene Symbol Synonym(s)=OsEnS-64%2C PCC13-62;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 64%2C desiccation-related protein%2C desiccation-related protein PCC13-62;Note=Similar to H0502B11.4 protein.;Transcript_evidence=AK112111 (DDBJ%2C Best hit);ORF_evidence=Q01L47 (UniProt);NIAS_FLcDNA=002-115-E01;Oryzabase=18387;TENOR=Os04t0404400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	20066516	20066517	.	-	.	Parent=Os04t0404400-01
Chr04	irgsp1_rep	CDS	20066196	20066515	.	-	0	Parent=Os04t0404400-01
Chr04	irgsp1_rep	CDS	20065875	20066100	.	-	1	Parent=Os04t0404400-01
Chr04	irgsp1_rep	CDS	20065415	20065786	.	-	0	Parent=Os04t0404400-01
Chr04	irgsp1_rep	three_prime_UTR	20065198	20065414	.	-	.	Parent=Os04t0404400-01
Chr04	irgsp1_rep	mRNA	20065421	20066469	.	+	.	ID=Os04t0404601-00;Name=Os04t0404601-00;Locus_id=Os04g0404601;Note=Hypothetical protein.;Transcript_evidence=EU975566 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0404601-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	20065421	20065803	.	+	0	Parent=Os04t0404601-00
Chr04	irgsp1_rep	CDS	20065889	20066110	.	+	1	Parent=Os04t0404601-00
Chr04	irgsp1_rep	CDS	20066201	20066219	.	+	1	Parent=Os04t0404601-00
Chr04	irgsp1_rep	three_prime_UTR	20066220	20066469	.	+	.	Parent=Os04t0404601-00
Chr04	irgsp1_rep	mRNA	20077907	20082924	.	+	.	ID=Os04t0404800-01;Name=Os04t0404800-01;Locus_id=Os04g0404800;Note=Similar to H0502B11.5 protein.;Transcript_evidence=AK243122 (DDBJ%2C Best hit);ORF_evidence=Q01L46 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: acetate-CoA ligase activity (GO:0003987),Molecular Function: AMP binding (GO:0016208);InterPro=AMP-dependent synthetase/ligase (IPR000873),Acetate-CoA ligase (IPR011904),AMP-binding%2C conserved site (IPR020845),Acyl-CoA synthase%2C domain of unknown function DUF3448 (IPR024597);NIAS_FLcDNA=J100029A19;TENOR=Os04t0404800-01;KEGG=Os04t0404800-01 (EC:6.2.1.1)
Chr04	irgsp1_rep	five_prime_UTR	20077907	20078081	.	+	.	Parent=Os04t0404800-01
Chr04	irgsp1_rep	CDS	20078082	20078417	.	+	0	Parent=Os04t0404800-01
Chr04	irgsp1_rep	CDS	20078760	20078906	.	+	0	Parent=Os04t0404800-01
Chr04	irgsp1_rep	CDS	20079012	20079167	.	+	0	Parent=Os04t0404800-01
Chr04	irgsp1_rep	CDS	20079310	20079432	.	+	0	Parent=Os04t0404800-01
Chr04	irgsp1_rep	CDS	20079522	20079690	.	+	0	Parent=Os04t0404800-01
Chr04	irgsp1_rep	CDS	20079827	20079909	.	+	2	Parent=Os04t0404800-01
Chr04	irgsp1_rep	CDS	20080084	20080185	.	+	0	Parent=Os04t0404800-01
Chr04	irgsp1_rep	CDS	20080262	20080350	.	+	0	Parent=Os04t0404800-01
Chr04	irgsp1_rep	CDS	20080468	20080558	.	+	1	Parent=Os04t0404800-01
Chr04	irgsp1_rep	CDS	20080689	20080802	.	+	0	Parent=Os04t0404800-01
Chr04	irgsp1_rep	CDS	20081178	20081254	.	+	0	Parent=Os04t0404800-01
Chr04	irgsp1_rep	CDS	20081327	20081405	.	+	1	Parent=Os04t0404800-01
Chr04	irgsp1_rep	CDS	20081503	20081571	.	+	0	Parent=Os04t0404800-01
Chr04	irgsp1_rep	CDS	20081678	20081853	.	+	0	Parent=Os04t0404800-01
Chr04	irgsp1_rep	CDS	20081948	20082004	.	+	1	Parent=Os04t0404800-01
Chr04	irgsp1_rep	CDS	20082121	20082211	.	+	1	Parent=Os04t0404800-01
Chr04	irgsp1_rep	CDS	20082321	20082419	.	+	0	Parent=Os04t0404800-01
Chr04	irgsp1_rep	CDS	20082584	20082769	.	+	0	Parent=Os04t0404800-01
Chr04	irgsp1_rep	three_prime_UTR	20082770	20082924	.	+	.	Parent=Os04t0404800-01
Chr04	irgsp1_rep	mRNA	20083925	20091641	.	-	.	ID=Os04t0404900-01;Name=Os04t0404900-01;Locus_id=Os04g0404900;Note=Similar to H0502B11.6 protein.;Transcript_evidence=AK107531 (DDBJ%2C Best hit);ORF_evidence=Q01L45 (UniProt);InterPro=Protein of unknown function DUF1624 (IPR012429);NIAS_FLcDNA=002-129-G10;Expression=AK107531;TENOR=Os04t0404900-01;KEGG=Os04t0404900-01
Chr04	irgsp1_rep	five_prime_UTR	20091613	20091641	.	-	.	Parent=Os04t0404900-01
Chr04	irgsp1_rep	five_prime_UTR	20091464	20091483	.	-	.	Parent=Os04t0404900-01
Chr04	irgsp1_rep	CDS	20091254	20091463	.	-	0	Parent=Os04t0404900-01
Chr04	irgsp1_rep	CDS	20086145	20086282	.	-	0	Parent=Os04t0404900-01
Chr04	irgsp1_rep	CDS	20085960	20086041	.	-	0	Parent=Os04t0404900-01
Chr04	irgsp1_rep	CDS	20085794	20085870	.	-	2	Parent=Os04t0404900-01
Chr04	irgsp1_rep	CDS	20085597	20085703	.	-	0	Parent=Os04t0404900-01
Chr04	irgsp1_rep	CDS	20085373	20085484	.	-	1	Parent=Os04t0404900-01
Chr04	irgsp1_rep	CDS	20085157	20085273	.	-	0	Parent=Os04t0404900-01
Chr04	irgsp1_rep	CDS	20084976	20085067	.	-	0	Parent=Os04t0404900-01
Chr04	irgsp1_rep	CDS	20084787	20084853	.	-	1	Parent=Os04t0404900-01
Chr04	irgsp1_rep	CDS	20084609	20084687	.	-	0	Parent=Os04t0404900-01
Chr04	irgsp1_rep	CDS	20084287	20084522	.	-	2	Parent=Os04t0404900-01
Chr04	irgsp1_rep	CDS	20084153	20084179	.	-	0	Parent=Os04t0404900-01
Chr04	irgsp1_rep	three_prime_UTR	20083925	20084152	.	-	.	Parent=Os04t0404900-01
Chr04	irgsp1_rep	mRNA	20099595	20099956	.	+	.	ID=Os04t0405000-01;Name=Os04t0405000-01;Locus_id=Os04g0405000;CGSNL Gene Symbol=CLPD2;CGSNL Gene Name=CLASS I CLP ATPASE D2;Oryzabase Gene Symbol Synonym(s)=ClpD2%2C OsClpD2;Oryzabase Gene Name Synonym(s)=class I Clp ATPase D2;Note=Similar to ATP-dependent Clp protease ATP-binding subunit.;Transcript_evidence=AK061666 (DDBJ%2C Best hit);ORF_evidence=Q01L44 (UniProt);NIAS_FLcDNA=001-036-F02;Oryzabase=8951;Expression=AK061666;TENOR=Os04t0405000-01;KEGG=Os04t0405000-01
Chr04	irgsp1_rep	CDS	20099595	20099729	.	+	0	Parent=Os04t0405000-01
Chr04	irgsp1_rep	three_prime_UTR	20099730	20099956	.	+	.	Parent=Os04t0405000-01
Chr04	irgsp1_rep	mRNA	20100165	20103018	.	-	.	ID=Os04t0405100-01;Name=Os04t0405100-01;Locus_id=Os04g0405100;Note=Similar to H0502B11.8 protein.;Transcript_evidence=AK288033 (DDBJ%2C Best hit);ORF_evidence=Q01L43 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Sterile alpha motif domain (IPR001660),Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 (IPR003397),Sterile alpha motif/pointed domain (IPR013761),Sterile alpha motif%2C type 1 (IPR021129);NIAS_FLcDNA=J075140G24;TENOR=Os04t0405100-01;KEGG=Os04t0405100-01
Chr04	irgsp1_rep	five_prime_UTR	20102902	20103018	.	-	.	Parent=Os04t0405100-01
Chr04	irgsp1_rep	CDS	20102584	20102901	.	-	0	Parent=Os04t0405100-01
Chr04	irgsp1_rep	CDS	20101973	20102088	.	-	0	Parent=Os04t0405100-01
Chr04	irgsp1_rep	CDS	20101244	20101370	.	-	1	Parent=Os04t0405100-01
Chr04	irgsp1_rep	CDS	20100843	20100991	.	-	0	Parent=Os04t0405100-01
Chr04	irgsp1_rep	CDS	20100615	20100677	.	-	1	Parent=Os04t0405100-01
Chr04	irgsp1_rep	CDS	20100504	20100531	.	-	1	Parent=Os04t0405100-01
Chr04	irgsp1_rep	three_prime_UTR	20100165	20100503	.	-	.	Parent=Os04t0405100-01
Chr04	irgsp1_rep	mRNA	20100614	20102936	.	+	.	ID=Os04t0405150-00;Name=Os04t0405150-00;Locus_id=Os04g0405150;Note=Hypothetical gene.;Transcript_evidence=BT019295 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0405150-00
Chr04	irgsp1_rep	five_prime_UTR	20100614	20100677	.	+	.	Parent=Os04t0405150-00
Chr04	irgsp1_rep	five_prime_UTR	20100843	20100991	.	+	.	Parent=Os04t0405150-00
Chr04	irgsp1_rep	five_prime_UTR	20101244	20101331	.	+	.	Parent=Os04t0405150-00
Chr04	irgsp1_rep	CDS	20101332	20101370	.	+	0	Parent=Os04t0405150-00
Chr04	irgsp1_rep	CDS	20101973	20102072	.	+	0	Parent=Os04t0405150-00
Chr04	irgsp1_rep	CDS	20102570	20102936	.	+	2	Parent=Os04t0405150-00
Chr04	irgsp1_rep	mRNA	20109577	20110741	.	-	.	ID=Os04t0405300-01;Name=Os04t0405300-01;Locus_id=Os04g0405300;Oryzabase Gene Symbol Synonym(s)=OsSDR110C-MS3%2C SDR110C-MS3;Oryzabase Gene Name Synonym(s)=short-chain alcohol dehydrogenase/reductase 110C-MS3%2C OsSDR110C family member MS3;Note=Similar to Stem secoisolariciresinol dehydrogenase (Fragment).;Transcript_evidence=AK110700 (DDBJ%2C Best hit);ORF_evidence=Q01L41 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);NIAS_FLcDNA=002-170-B08;Oryzabase=21335;Expression=AK110700;TENOR=Os04t0405300-01;KEGG=Os04t0405300-01
Chr04	irgsp1_rep	five_prime_UTR	20110684	20110741	.	-	.	Parent=Os04t0405300-01
Chr04	irgsp1_rep	CDS	20110640	20110683	.	-	0	Parent=Os04t0405300-01
Chr04	irgsp1_rep	CDS	20109746	20110529	.	-	1	Parent=Os04t0405300-01
Chr04	irgsp1_rep	three_prime_UTR	20109577	20109745	.	-	.	Parent=Os04t0405300-01
Chr04	irgsp1_rep	mRNA	20117097	20119136	.	-	.	ID=Os04t0405401-01;Name=Os04t0405401-01;Locus_id=Os04g0405401;Note=Hypothetical conserved gene.;Transcript_evidence=AK242297 (DDBJ%2C Best hit);ORF_evidence=B9FF06 (UniProt);NIAS_FLcDNA=J075192C06;TENOR=Os04t0405401-01;KEGG=Os04t0405401-01
Chr04	irgsp1_rep	five_prime_UTR	20118769	20119136	.	-	.	Parent=Os04t0405401-01
Chr04	irgsp1_rep	CDS	20118566	20118768	.	-	0	Parent=Os04t0405401-01
Chr04	irgsp1_rep	CDS	20118322	20118415	.	-	1	Parent=Os04t0405401-01
Chr04	irgsp1_rep	three_prime_UTR	20118318	20118321	.	-	.	Parent=Os04t0405401-01
Chr04	irgsp1_rep	three_prime_UTR	20117704	20117819	.	-	.	Parent=Os04t0405401-01
Chr04	irgsp1_rep	three_prime_UTR	20117097	20117355	.	-	.	Parent=Os04t0405401-01
Chr04	irgsp1_rep	mRNA	20120596	20122056	.	-	.	ID=Os04t0405500-01;Name=Os04t0405500-01;Locus_id=Os04g0405500;Note=Conserved hypothetical protein.;Transcript_evidence=AK063263 (DDBJ%2C Best hit);ORF_evidence=Q7XLY7 (UniProt);NIAS_FLcDNA=001-113-A10;Expression=AK063263;TENOR=Os04t0405500-01;KEGG=Os04t0405500-01
Chr04	irgsp1_rep	five_prime_UTR	20122056	20122056	.	-	.	Parent=Os04t0405500-01
Chr04	irgsp1_rep	CDS	20122007	20122055	.	-	0	Parent=Os04t0405500-01
Chr04	irgsp1_rep	CDS	20120785	20121635	.	-	2	Parent=Os04t0405500-01
Chr04	irgsp1_rep	three_prime_UTR	20120596	20120784	.	-	.	Parent=Os04t0405500-01
Chr04	irgsp1_rep	mRNA	20124675	20131045	.	-	.	ID=Os04t0405600-01;Name=Os04t0405600-01;Locus_id=Os04g0405600;Note=Protein of unknown function DUF1350 family protein.;Transcript_evidence=AK068579 (DDBJ%2C Best hit);ORF_evidence=Q01L39 (UniProt);InterPro=Protein of unknown function DUF1350 (IPR010765);NIAS_FLcDNA=J013157C11;Expression=AK068579;TENOR=Os04t0405600-01;KEGG=Os04t0405600-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	20130921	20131045	.	-	.	Parent=Os04t0405600-01
Chr04	irgsp1_rep	CDS	20130634	20130920	.	-	0	Parent=Os04t0405600-01
Chr04	irgsp1_rep	CDS	20130484	20130553	.	-	1	Parent=Os04t0405600-01
Chr04	irgsp1_rep	CDS	20130260	20130384	.	-	0	Parent=Os04t0405600-01
Chr04	irgsp1_rep	CDS	20129638	20129746	.	-	1	Parent=Os04t0405600-01
Chr04	irgsp1_rep	CDS	20129501	20129564	.	-	0	Parent=Os04t0405600-01
Chr04	irgsp1_rep	CDS	20129165	20129220	.	-	2	Parent=Os04t0405600-01
Chr04	irgsp1_rep	CDS	20128205	20128312	.	-	0	Parent=Os04t0405600-01
Chr04	irgsp1_rep	CDS	20127500	20127649	.	-	0	Parent=Os04t0405600-01
Chr04	irgsp1_rep	CDS	20125714	20125884	.	-	0	Parent=Os04t0405600-01
Chr04	irgsp1_rep	CDS	20125301	20125534	.	-	0	Parent=Os04t0405600-01
Chr04	irgsp1_rep	three_prime_UTR	20124675	20125300	.	-	.	Parent=Os04t0405600-01
Chr04	irgsp1_rep	mRNA	20124764	20131006	.	-	.	ID=Os04t0405600-02;Name=Os04t0405600-02;Locus_id=Os04g0405600;Note=Protein of unknown function DUF1350 family protein.;Transcript_evidence=AK101565 (DDBJ%2C Best hit);ORF_evidence=Q01L39 (UniProt);InterPro=Protein of unknown function DUF1350 (IPR010765);NIAS_FLcDNA=J033050E24;Expression=AK101565;TENOR=Os04t0405600-02;KEGG=Os04t0405600-02;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	20130921	20131006	.	-	.	Parent=Os04t0405600-02
Chr04	irgsp1_rep	CDS	20130634	20130920	.	-	0	Parent=Os04t0405600-02
Chr04	irgsp1_rep	CDS	20130484	20130553	.	-	1	Parent=Os04t0405600-02
Chr04	irgsp1_rep	CDS	20130260	20130384	.	-	0	Parent=Os04t0405600-02
Chr04	irgsp1_rep	CDS	20129638	20129746	.	-	1	Parent=Os04t0405600-02
Chr04	irgsp1_rep	CDS	20129501	20129564	.	-	0	Parent=Os04t0405600-02
Chr04	irgsp1_rep	CDS	20129165	20129220	.	-	2	Parent=Os04t0405600-02
Chr04	irgsp1_rep	CDS	20128205	20128312	.	-	0	Parent=Os04t0405600-02
Chr04	irgsp1_rep	CDS	20127500	20127649	.	-	0	Parent=Os04t0405600-02
Chr04	irgsp1_rep	CDS	20125714	20125884	.	-	0	Parent=Os04t0405600-02
Chr04	irgsp1_rep	CDS	20125301	20125534	.	-	0	Parent=Os04t0405600-02
Chr04	irgsp1_rep	three_prime_UTR	20124764	20125300	.	-	.	Parent=Os04t0405600-02
Chr04	irgsp1_rep	mRNA	20131283	20133400	.	+	.	ID=Os04t0405700-00;Name=Os04t0405700-00;Locus_id=Os04g0405700;Note=Similar to H0502B11.13 protein.;Transcript_evidence=tplb0022b18 (Wheat FLcDNA);ORF_evidence=Q01L38 (UniProt);InterPro=Protein of unknown function DUF677 (IPR007749);TENOR=Os04t0405700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	20131283	20131339	.	+	.	Parent=Os04t0405700-00
Chr04	irgsp1_rep	CDS	20131340	20132623	.	+	0	Parent=Os04t0405700-00
Chr04	irgsp1_rep	three_prime_UTR	20132624	20133400	.	+	.	Parent=Os04t0405700-00
Chr04	irgsp1_rep	mRNA	20139175	20141767	.	+	.	ID=Os04t0405800-01;Name=Os04t0405800-01;Locus_id=Os04g0405800;Note=Similar to OSIGBa0142C11.1 protein.;Transcript_evidence=AK108757 (DDBJ%2C Best hit);ORF_evidence=Q01L58 (UniProt);GO=Biological Process: pyrimidine nucleotide biosynthetic process (GO:0006221),Biological Process: cellular amino acid biosynthetic process (GO:0008652),Molecular Function: uridylate kinase activity (GO:0009041);InterPro=Aspartate/glutamate/uridylate kinase (IPR001048),Uridylate kinase (IPR011817);NIAS_FLcDNA=002-150-G02;TENOR=Os04t0405800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	20139175	20139176	.	+	.	Parent=Os04t0405800-01
Chr04	irgsp1_rep	CDS	20139177	20139289	.	+	0	Parent=Os04t0405800-01
Chr04	irgsp1_rep	CDS	20139377	20139521	.	+	1	Parent=Os04t0405800-01
Chr04	irgsp1_rep	CDS	20139597	20139650	.	+	0	Parent=Os04t0405800-01
Chr04	irgsp1_rep	CDS	20139737	20139828	.	+	0	Parent=Os04t0405800-01
Chr04	irgsp1_rep	CDS	20140669	20140904	.	+	1	Parent=Os04t0405800-01
Chr04	irgsp1_rep	CDS	20141038	20141211	.	+	2	Parent=Os04t0405800-01
Chr04	irgsp1_rep	CDS	20141303	20141400	.	+	2	Parent=Os04t0405800-01
Chr04	irgsp1_rep	three_prime_UTR	20141401	20141767	.	+	.	Parent=Os04t0405800-01
Chr04	irgsp1_rep	mRNA	20143778	20145831	.	-	.	ID=Os04t0405900-01;Name=Os04t0405900-01;Locus_id=Os04g0405900;Note=Similar to OSIGBa0142C11.2 protein.;Transcript_evidence=AK066299 (DDBJ%2C Best hit);ORF_evidence=Q01L57 (UniProt);NIAS_FLcDNA=J013059M19;Expression=AK066299;TENOR=Os04t0405900-01;KEGG=Os04t0405900-01
Chr04	irgsp1_rep	five_prime_UTR	20145614	20145831	.	-	.	Parent=Os04t0405900-01
Chr04	irgsp1_rep	five_prime_UTR	20144267	20145069	.	-	.	Parent=Os04t0405900-01
Chr04	irgsp1_rep	CDS	20144021	20144266	.	-	0	Parent=Os04t0405900-01
Chr04	irgsp1_rep	three_prime_UTR	20143778	20144020	.	-	.	Parent=Os04t0405900-01
Chr04	irgsp1_rep	mRNA	20158690	20159171	.	-	.	ID=Os04t0406300-01;Name=Os04t0406300-01;Locus_id=Os04g0406300;Note=Similar to Integral membrane protein.;Transcript_evidence=AK062806 (DDBJ%2C Best hit);ORF_evidence=Q53PN2 (UniProt);NIAS_FLcDNA=001-107-D06;Expression=AK062806;TENOR=Os04t0406300-01;KEGG=Os04t0406300-01
Chr04	irgsp1_rep	five_prime_UTR	20159131	20159171	.	-	.	Parent=Os04t0406300-01
Chr04	irgsp1_rep	CDS	20158993	20159130	.	-	0	Parent=Os04t0406300-01
Chr04	irgsp1_rep	three_prime_UTR	20158690	20158992	.	-	.	Parent=Os04t0406300-01
Chr04	irgsp1_rep	mRNA	20158243	20159044	.	-	.	ID=Os04t0406300-02;Name=Os04t0406300-02;Locus_id=Os04g0406300;Note=Hypothetical protein.;Transcript_evidence=AK111311 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-181-C03;Expression=AK111311;TENOR=Os04t0406300-02;KEGG=Os04t0406300-02
Chr04	irgsp1_rep	five_prime_UTR	20158638	20159044	.	-	.	Parent=Os04t0406300-02
Chr04	irgsp1_rep	CDS	20158371	20158637	.	-	0	Parent=Os04t0406300-02
Chr04	irgsp1_rep	three_prime_UTR	20158243	20158370	.	-	.	Parent=Os04t0406300-02
Chr04	irgsp1_rep	mRNA	20169585	20171246	.	+	.	ID=Os04t0406600-01;Name=Os04t0406600-01;Locus_id=Os04g0406600;Oryzabase Gene Symbol Synonym(s)=OsADT%2C ADT;Oryzabase Gene Name Synonym(s)=arogenate dehydratase;Note=Prephenate dehydratase domain containing protein.;Transcript_evidence=AK103609 (DDBJ%2C Best hit);ORF_evidence=Q01L56 (UniProt);GO=Biological Process: L-phenylalanine biosynthetic process (GO:0009094),Molecular Function: prephenate dehydratase activity (GO:0004664);InterPro=Prephenate dehydratase (IPR001086),Prephenate dehydratase%2C conserved site (IPR018528);NIAS_FLcDNA=J033133I10;Oryzabase=22773;Expression=AK103609;TENOR=Os04t0406600-01;KEGG=Os04t0406600-01
Chr04	irgsp1_rep	five_prime_UTR	20169585	20169714	.	+	.	Parent=Os04t0406600-01
Chr04	irgsp1_rep	CDS	20169715	20171025	.	+	0	Parent=Os04t0406600-01
Chr04	irgsp1_rep	three_prime_UTR	20171026	20171246	.	+	.	Parent=Os04t0406600-01
Chr04	irgsp1_rep	mRNA	20186829	20189403	.	-	.	ID=Os04t0407300-01;Name=Os04t0407300-01;Locus_id=Os04g0407300;Note=Conserved hypothetical protein.;Transcript_evidence=AK101793 (DDBJ%2C Best hit);ORF_evidence=B8ATI5 (UniProt);NIAS_FLcDNA=J033065K23;Expression=AK101793;TENOR=Os04t0407300-01;KEGG=Os04t0407300-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	20189144	20189403	.	-	.	Parent=Os04t0407300-01
Chr04	irgsp1_rep	CDS	20189040	20189143	.	-	0	Parent=Os04t0407300-01
Chr04	irgsp1_rep	CDS	20188242	20188452	.	-	1	Parent=Os04t0407300-01
Chr04	irgsp1_rep	three_prime_UTR	20186829	20188241	.	-	.	Parent=Os04t0407300-01
Chr04	irgsp1_rep	mRNA	20187932	20189402	.	-	.	ID=Os04t0407300-02;Name=Os04t0407300-02;Locus_id=Os04g0407300;Note=Conserved hypothetical protein.;Transcript_evidence=AK121980 (DDBJ%2C Best hit);ORF_evidence=B8ATI5 (UniProt);NIAS_FLcDNA=J033108L11;Expression=AK121980;TENOR=Os04t0407300-02;KEGG=Os04t0407300-02;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	20189282	20189402	.	-	.	Parent=Os04t0407300-02
Chr04	irgsp1_rep	five_prime_UTR	20189144	20189152	.	-	.	Parent=Os04t0407300-02
Chr04	irgsp1_rep	CDS	20189040	20189143	.	-	0	Parent=Os04t0407300-02
Chr04	irgsp1_rep	CDS	20188242	20188452	.	-	1	Parent=Os04t0407300-02
Chr04	irgsp1_rep	three_prime_UTR	20187932	20188241	.	-	.	Parent=Os04t0407300-02
Chr04	irgsp1_rep	mRNA	20200328	20201698	.	-	.	ID=Os04t0407350-01;Name=Os04t0407350-01;Locus_id=Os04g0407350;Note=Hypothetical protein.;Transcript_evidence=AK070306 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023049L04;Expression=AK070306;TENOR=Os04t0407350-01;KEGG=Os04t0407350-01
Chr04	irgsp1_rep	five_prime_UTR	20201649	20201698	.	-	.	Parent=Os04t0407350-01
Chr04	irgsp1_rep	five_prime_UTR	20201155	20201639	.	-	.	Parent=Os04t0407350-01
Chr04	irgsp1_rep	CDS	20200606	20201154	.	-	0	Parent=Os04t0407350-01
Chr04	irgsp1_rep	three_prime_UTR	20200328	20200605	.	-	.	Parent=Os04t0407350-01
Chr04	irgsp1_rep	mRNA	20200158	20201627	.	-	.	ID=Os04t0407350-02;Name=Os04t0407350-02;Locus_id=Os04g0407350;Note=Hypothetical protein.;Transcript_evidence=AK105597 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-200-A02;Expression=AK105597;TENOR=Os04t0407350-02;KEGG=Os04t0407350-02
Chr04	irgsp1_rep	five_prime_UTR	20201155	20201627	.	-	.	Parent=Os04t0407350-02
Chr04	irgsp1_rep	CDS	20200606	20201154	.	-	0	Parent=Os04t0407350-02
Chr04	irgsp1_rep	three_prime_UTR	20200158	20200605	.	-	.	Parent=Os04t0407350-02
Chr04	irgsp1_rep	mRNA	20195358	20196270	.	+	.	ID=Os04t0407500-00;Name=Os04t0407500-00;Locus_id=Os04g0407500;Note=Similar to H0321H01.2 protein.;Transcript_evidence=BT085882 (DDBJ);ORF_evidence=Q01L54 (UniProt);InterPro=Protein of unknown function DUF868%2C plant (IPR008586);TENOR=Os04t0407500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	20195358	20196110	.	+	0	Parent=Os04t0407500-00
Chr04	irgsp1_rep	three_prime_UTR	20196111	20196270	.	+	.	Parent=Os04t0407500-00
Chr04	irgsp1_rep	mRNA	20200632	20201883	.	+	.	ID=Os04t0407800-01;Name=Os04t0407800-01;Locus_id=Os04g0407800;CGSNL Gene Symbol=GA2OX11;CGSNL Gene Name=GIBBERELLIN 2-OXIDASE 11;Oryzabase Gene Symbol Synonym(s)=OsGA2ox11%2C 2-ODD31%2C Os2-ODD31%2C 2ODD31%2C Os2ODD31;Oryzabase Gene Name Synonym(s)=2-oxoglutarate-dependent dioxygenase 31;Note=Similar to H0321H01.3 protein.;Transcript_evidence=AK110729 (DDBJ%2C Best hit);ORF_evidence=Q01L53 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=002-170-E08;Oryzabase=22232;Expression=AK110729;TENOR=Os04t0407800-01;KEGG=Os04t0407800-01
Chr04	irgsp1_rep	five_prime_UTR	20200632	20200632	.	+	.	Parent=Os04t0407800-01
Chr04	irgsp1_rep	CDS	20200633	20201639	.	+	0	Parent=Os04t0407800-01
Chr04	irgsp1_rep	CDS	20201649	20201652	.	+	1	Parent=Os04t0407800-01
Chr04	irgsp1_rep	three_prime_UTR	20201653	20201883	.	+	.	Parent=Os04t0407800-01
Chr04	irgsp1_rep	mRNA	20211382	20212986	.	-	.	ID=Os04t0407850-00;Name=Os04t0407850-00;Locus_id=Os04g0407850;Note=Similar to H0321H01.4 protein.;Transcript_evidence=EU942896 (DDBJ);ORF_evidence=Q01L52 (UniProt);TENOR=Os04t0407850-00
Chr04	irgsp1_rep	CDS	20211382	20212986	.	-	0	Parent=Os04t0407850-00
Chr04	irgsp1_rep	mRNA	20211572	20213269	.	+	.	ID=Os04t0407900-01;Name=Os04t0407900-01;Locus_id=Os04g0407900;Note=Similar to CytoChrom P450-like protein.;Transcript_evidence=AK064758 (DDBJ%2C Best hit);ORF_evidence=Q01L52 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=002-120-G11;Oryzabase=22500;Expression=AK064758;TENOR=Os04t0407900-01;KEGG=Os04t0407900-01
Chr04	irgsp1_rep	five_prime_UTR	20211572	20211573	.	+	.	Parent=Os04t0407900-01
Chr04	irgsp1_rep	CDS	20211574	20212977	.	+	0	Parent=Os04t0407900-01
Chr04	irgsp1_rep	three_prime_UTR	20212978	20213269	.	+	.	Parent=Os04t0407900-01
Chr04	irgsp1_rep	mRNA	20221253	20223066	.	-	.	ID=Os04t0408600-01;Name=Os04t0408600-01;Locus_id=Os04g0408600;Note=Protein of unknown function DUF662 family protein.;Transcript_evidence=AK121434 (DDBJ%2C Best hit);ORF_evidence=B7EU28 (UniProt);InterPro=Golgin%2C RAB6-interacting (IPR007033);NIAS_FLcDNA=J023139O07;Expression=AK121434;TENOR=Os04t0408600-01;KEGG=Os04t0408600-01
Chr04	irgsp1_rep	five_prime_UTR	20222998	20223066	.	-	.	Parent=Os04t0408600-01
Chr04	irgsp1_rep	CDS	20222755	20222997	.	-	0	Parent=Os04t0408600-01
Chr04	irgsp1_rep	CDS	20222115	20222225	.	-	0	Parent=Os04t0408600-01
Chr04	irgsp1_rep	CDS	20221789	20221869	.	-	0	Parent=Os04t0408600-01
Chr04	irgsp1_rep	CDS	20221625	20221699	.	-	0	Parent=Os04t0408600-01
Chr04	irgsp1_rep	three_prime_UTR	20221253	20221624	.	-	.	Parent=Os04t0408600-01
Chr04	irgsp1_rep	mRNA	20224676	20225094	.	+	.	ID=Os04t0408650-00;Name=Os04t0408650-00;Locus_id=Os04g0408650;Note=Non-protein coding transcript.;Transcript_evidence=BT016336 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0408650-00
Chr04	irgsp1_rep	exon	20224676	20225094	.	+	.	Parent=Os04t0408650-00
Chr04	irgsp1_rep	mRNA	20224698	20226415	.	-	.	ID=Os04t0408700-01;Name=Os04t0408700-01;Locus_id=Os04g0408700;Note=Similar to DNA-binding protein S1FA1.;Transcript_evidence=AK121205 (DDBJ%2C Best hit);ORF_evidence=A5WYH4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=DNA binding protein S1FA (IPR006779);NIAS_FLcDNA=J023087P18;Expression=AK121205;TENOR=Os04t0408700-01;KEGG=Os04t0408700-01
Chr04	irgsp1_rep	five_prime_UTR	20226067	20226415	.	-	.	Parent=Os04t0408700-01
Chr04	irgsp1_rep	CDS	20226040	20226066	.	-	0	Parent=Os04t0408700-01
Chr04	irgsp1_rep	CDS	20224878	20225093	.	-	0	Parent=Os04t0408700-01
Chr04	irgsp1_rep	three_prime_UTR	20224698	20224877	.	-	.	Parent=Os04t0408700-01
Chr04	irgsp1_rep	mRNA	20229021	20229438	.	+	.	ID=Os04t0408801-00;Name=Os04t0408801-00;Locus_id=Os04g0408801;Note=Non-protein coding transcript.;Transcript_evidence=BT016336 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0408801-00
Chr04	irgsp1_rep	exon	20229021	20229438	.	+	.	Parent=Os04t0408801-00
Chr04	irgsp1_rep	mRNA	20229047	20231079	.	-	.	ID=Os04t0408900-01;Name=Os04t0408900-01;Locus_id=Os04g0408900;Note=Similar to DNA-binding protein S1FA.;Transcript_evidence=AK058627 (DDBJ%2C Best hit);ORF_evidence=Q01L73 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=DNA binding protein S1FA (IPR006779);NIAS_FLcDNA=001-018-C04;Expression=AK058627;TENOR=Os04t0408900-01;KEGG=Os04t0408900-01
Chr04	irgsp1_rep	five_prime_UTR	20230978	20231079	.	-	.	Parent=Os04t0408900-01
Chr04	irgsp1_rep	five_prime_UTR	20230814	20230859	.	-	.	Parent=Os04t0408900-01
Chr04	irgsp1_rep	CDS	20230799	20230813	.	-	0	Parent=Os04t0408900-01
Chr04	irgsp1_rep	CDS	20229222	20229437	.	-	0	Parent=Os04t0408900-01
Chr04	irgsp1_rep	three_prime_UTR	20229047	20229221	.	-	.	Parent=Os04t0408900-01
Chr04	irgsp1_rep	mRNA	20229041	20230969	.	-	.	ID=Os04t0408900-02;Name=Os04t0408900-02;Locus_id=Os04g0408900;Note=Similar to H0321H01.7 protein.;Transcript_evidence=AK072291 (DDBJ%2C Best hit);ORF_evidence=A5WYH4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=DNA binding protein S1FA (IPR006779);NIAS_FLcDNA=J023018N16;TENOR=Os04t0408900-02;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	20229516	20230969	.	-	.	Parent=Os04t0408900-02
Chr04	irgsp1_rep	CDS	20229222	20229515	.	-	0	Parent=Os04t0408900-02
Chr04	irgsp1_rep	three_prime_UTR	20229041	20229221	.	-	.	Parent=Os04t0408900-02
Chr04	irgsp1_rep	mRNA	20236417	20238126	.	-	.	ID=Os04t0409100-00;Name=Os04t0409100-00;Locus_id=Os04g0409100;Oryzabase Gene Symbol Synonym(s)=OsFbox207%2C Os_F0611;Oryzabase Gene Name Synonym(s)=F-box protein 207;Note=Similar to H0321H01.9 protein.;Transcript_evidence=AK357822 (DDBJ);ORF_evidence=Q01L71 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);Oryzabase=16995;TENOR=Os04t0409100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	20237266	20238126	.	-	0	Parent=Os04t0409100-00
Chr04	irgsp1_rep	CDS	20237035	20237175	.	-	0	Parent=Os04t0409100-00
Chr04	irgsp1_rep	CDS	20236541	20236924	.	-	0	Parent=Os04t0409100-00
Chr04	irgsp1_rep	three_prime_UTR	20236417	20236540	.	-	.	Parent=Os04t0409100-00
Chr04	irgsp1_rep	mRNA	20240211	20243460	.	-	.	ID=Os04t0409200-01;Name=Os04t0409200-01;Locus_id=Os04g0409200;RAP-DB Gene Symbol Synonym(s)=OsBEIIa%2C OsSBE4%2C RBE4;RAP-DB Gene Name Synonym(s)=Starch branching enzyme IIa;CGSNL Gene Symbol=SBE4;CGSNL Gene Name=STARCH BRANCHING ENZYME 4;Oryzabase Gene Symbol Synonym(s)=RBE4%2C OsSBE4%2C BEIIa%2C QEIIb%2C BEIIA%2C OsBEIIa;Oryzabase Gene Name Synonym(s)=Q-enzyme IIb%2C starch branching enzyme IIb%2C Starch branching enzyme IIa;Note=Starch branching enzyme IIa%2C Starch biosynthesis%2C Regulation of the properties of sugary endosperm;Transcript_evidence=AB023498;ORF_evidence=Q9SXI9;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Immunoglobulin E-set (IPR014756),Immunoglobulin-like fold (IPR013783),Glycoside hydrolase%2C family 13%2C N-terminal (IPR004193);Manual Curation=June 7%2C 2018;Literature_PMID=28730411,11333304;Oryzabase=8111;TENOR=Os04t0409200-00
Chr04	irgsp1_rep	five_prime_UTR	20243323	20243460	.	-	.	Parent=Os04t0409200-01
Chr04	irgsp1_rep	CDS	20243181	20243322	.	-	0	Parent=Os04t0409200-01
Chr04	irgsp1_rep	CDS	20242570	20242691	.	-	2	Parent=Os04t0409200-01
Chr04	irgsp1_rep	CDS	20242065	20242336	.	-	0	Parent=Os04t0409200-01
Chr04	irgsp1_rep	CDS	20241704	20241802	.	-	1	Parent=Os04t0409200-01
Chr04	irgsp1_rep	CDS	20241567	20241609	.	-	1	Parent=Os04t0409200-01
Chr04	irgsp1_rep	CDS	20241368	20241427	.	-	0	Parent=Os04t0409200-01
Chr04	irgsp1_rep	CDS	20240704	20240784	.	-	0	Parent=Os04t0409200-01
Chr04	irgsp1_rep	CDS	20240492	20240608	.	-	0	Parent=Os04t0409200-01
Chr04	irgsp1_rep	CDS	20240211	20240306	.	-	0	Parent=Os04t0409200-01
Chr04	irgsp1_rep	mRNA	20245226	20249942	.	-	.	ID=Os04t0409500-01;Name=Os04t0409500-01;Locus_id=Os04g0409500;Note=Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase domain containing protein.;Transcript_evidence=AK100687 (DDBJ%2C Best hit);ORF_evidence=Q01L69 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Metallophosphoesterase domain (IPR004843);NIAS_FLcDNA=J023114A21;Expression=AK100687;TENOR=Os04t0409500-01;KEGG=Os04t0409500-01
Chr04	irgsp1_rep	five_prime_UTR	20249894	20249942	.	-	.	Parent=Os04t0409500-01
Chr04	irgsp1_rep	CDS	20249368	20249893	.	-	0	Parent=Os04t0409500-01
Chr04	irgsp1_rep	CDS	20248607	20248674	.	-	2	Parent=Os04t0409500-01
Chr04	irgsp1_rep	CDS	20248343	20248522	.	-	0	Parent=Os04t0409500-01
Chr04	irgsp1_rep	CDS	20245541	20245738	.	-	0	Parent=Os04t0409500-01
Chr04	irgsp1_rep	three_prime_UTR	20245226	20245540	.	-	.	Parent=Os04t0409500-01
Chr04	irgsp1_rep	mRNA	20250090	20255721	.	+	.	ID=Os04t0409600-01;Name=Os04t0409600-01;Locus_id=Os04g0409600;RAP-DB Gene Symbol Synonym(s)=DSL1%2C OsHDA711;RAP-DB Gene Name Synonym(s)=DWARF WITH SLENDER LEAF1;CGSNL Gene Symbol=DSL1;CGSNL Gene Name=DWARF WITH SLENDER LEAF1;Oryzabase Gene Symbol Synonym(s)=OsDSL1%2C OsHDA711%2C HDA711;Oryzabase Gene Name Synonym(s)=dwarf with slender leaf 1%2C Histone Deacetylase 711;Note=Histone deacetylase%2C Vegetative and reproductive development;Transcript_evidence=AK066667;ORF_evidence=B9FF18;GO=Biological Process: histone deacetylation (GO:0016575),Molecular Function: histone deacetylase activity (GO:0004407);InterPro=Histone deacetylase domain superfamily (IPR037138),Ureohydrolase domain superfamily (IPR023696),Histone deacetylase (IPR003084),Histone deacetylase domain (IPR023801);NIAS_FLcDNA=J013074P11;Manual Curation=November 13%2C 2019;Literature_PMID=31697317;Oryzabase=23344;TENOR=Os04t0409600-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Comment=There might be sequencing gap in this region.
Chr04	irgsp1_rep	five_prime_UTR	20250090	20250287	.	+	.	Parent=Os04t0409600-01
Chr04	irgsp1_rep	CDS	20250288	20250324	.	+	0	Parent=Os04t0409600-01
Chr04	irgsp1_rep	CDS	20251053	20251165	.	+	2	Parent=Os04t0409600-01
Chr04	irgsp1_rep	CDS	20251259	20251376	.	+	0	Parent=Os04t0409600-01
Chr04	irgsp1_rep	CDS	20252068	20252142	.	+	2	Parent=Os04t0409600-01
Chr04	irgsp1_rep	CDS	20252208	20252335	.	+	2	Parent=Os04t0409600-01
Chr04	irgsp1_rep	CDS	20252484	20252574	.	+	0	Parent=Os04t0409600-01
Chr04	irgsp1_rep	CDS	20252767	20252771	.	+	2	Parent=Os04t0409600-01
Chr04	irgsp1_rep	three_prime_UTR	20252772	20252830	.	+	.	Parent=Os04t0409600-01
Chr04	irgsp1_rep	three_prime_UTR	20253553	20253645	.	+	.	Parent=Os04t0409600-01
Chr04	irgsp1_rep	three_prime_UTR	20253724	20253832	.	+	.	Parent=Os04t0409600-01
Chr04	irgsp1_rep	three_prime_UTR	20254118	20254167	.	+	.	Parent=Os04t0409600-01
Chr04	irgsp1_rep	three_prime_UTR	20254241	20254331	.	+	.	Parent=Os04t0409600-01
Chr04	irgsp1_rep	three_prime_UTR	20254566	20254636	.	+	.	Parent=Os04t0409600-01
Chr04	irgsp1_rep	three_prime_UTR	20254885	20254983	.	+	.	Parent=Os04t0409600-01
Chr04	irgsp1_rep	three_prime_UTR	20255147	20255213	.	+	.	Parent=Os04t0409600-01
Chr04	irgsp1_rep	three_prime_UTR	20255413	20255721	.	+	.	Parent=Os04t0409600-01
Chr04	irgsp1_rep	mRNA	20256143	20259273	.	+	.	ID=Os04t0409900-01;Name=Os04t0409900-01;Locus_id=Os04g0409900;CGSNL Gene Symbol=NIN4;CGSNL Gene Name=NEUTRAL/ALKALINE INVERTASE 4;Oryzabase Gene Symbol Synonym(s)=OsNIN4;Oryzabase Gene Name Synonym(s)=neutral/alkaline invertase 4;Note=Plant neutral invertase family protein.;Transcript_evidence=AK288558 (DDBJ%2C Best hit);ORF_evidence=B4FS06 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Plant neutral invertase (IPR006937),Six-hairpin glycosidase-like (IPR008928);NIAS_FLcDNA=J090047H18;Oryzabase=14669;TENOR=Os04t0409900-01;KEGG=Os04t0409900-01
Chr04	irgsp1_rep	five_prime_UTR	20256143	20256416	.	+	.	Parent=Os04t0409900-01
Chr04	irgsp1_rep	CDS	20256417	20256890	.	+	0	Parent=Os04t0409900-01
Chr04	irgsp1_rep	CDS	20257358	20257523	.	+	0	Parent=Os04t0409900-01
Chr04	irgsp1_rep	CDS	20257600	20257811	.	+	2	Parent=Os04t0409900-01
Chr04	irgsp1_rep	CDS	20258060	20258553	.	+	0	Parent=Os04t0409900-01
Chr04	irgsp1_rep	CDS	20258638	20258686	.	+	1	Parent=Os04t0409900-01
Chr04	irgsp1_rep	CDS	20258828	20259157	.	+	0	Parent=Os04t0409900-01
Chr04	irgsp1_rep	three_prime_UTR	20259158	20259273	.	+	.	Parent=Os04t0409900-01
Chr04	irgsp1_rep	mRNA	20256626	20259226	.	-	.	ID=Os04t0410050-00;Name=Os04t0410050-00;Locus_id=Os04g0410050;Note=Non-protein coding transcript.;Transcript_evidence=tplb0038i24 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os04t0410050-00
Chr04	irgsp1_rep	exon	20258833	20259226	.	-	.	Parent=Os04t0410050-00
Chr04	irgsp1_rep	exon	20258635	20258689	.	-	.	Parent=Os04t0410050-00
Chr04	irgsp1_rep	exon	20258058	20258550	.	-	.	Parent=Os04t0410050-00
Chr04	irgsp1_rep	exon	20257588	20257809	.	-	.	Parent=Os04t0410050-00
Chr04	irgsp1_rep	exon	20257350	20257520	.	-	.	Parent=Os04t0410050-00
Chr04	irgsp1_rep	exon	20256626	20256884	.	-	.	Parent=Os04t0410050-00
Chr04	irgsp1_rep	mRNA	20260053	20261564	.	-	.	ID=Os04t0410200-00;Name=Os04t0410200-00;Locus_id=Os04g0410200;Note=Similar to H0321H01.14 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01L66 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os04t0410200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	20260053	20261564	.	-	0	Parent=Os04t0410200-00
Chr04	irgsp1_rep	mRNA	20261677	20263159	.	-	.	ID=Os04t0410250-00;Name=Os04t0410250-00;Locus_id=Os04g0410250;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001173925.1 (RefSeq);TENOR=Os04t0410250-00
Chr04	irgsp1_rep	CDS	20263044	20263159	.	-	0	Parent=Os04t0410250-00
Chr04	irgsp1_rep	CDS	20262254	20262335	.	-	1	Parent=Os04t0410250-00
Chr04	irgsp1_rep	CDS	20261677	20261757	.	-	0	Parent=Os04t0410250-00
Chr04	irgsp1_rep	mRNA	20276163	20279226	.	+	.	ID=Os04t0410300-01;Name=Os04t0410300-01;Locus_id=Os04g0410300;Note=Similar to H0717B12.1 protein.;Transcript_evidence=AK111083 (DDBJ%2C Best hit);ORF_evidence=Q01JC1 (UniProt);NIAS_FLcDNA=002-175-F06;Expression=AK111083;TENOR=Os04t0410300-01;KEGG=Os04t0410300-01
Chr04	irgsp1_rep	five_prime_UTR	20276163	20276307	.	+	.	Parent=Os04t0410300-01
Chr04	irgsp1_rep	five_prime_UTR	20276407	20276467	.	+	.	Parent=Os04t0410300-01
Chr04	irgsp1_rep	CDS	20276468	20276474	.	+	0	Parent=Os04t0410300-01
Chr04	irgsp1_rep	CDS	20276985	20277134	.	+	2	Parent=Os04t0410300-01
Chr04	irgsp1_rep	CDS	20277223	20277296	.	+	2	Parent=Os04t0410300-01
Chr04	irgsp1_rep	CDS	20277382	20277500	.	+	0	Parent=Os04t0410300-01
Chr04	irgsp1_rep	CDS	20278175	20278258	.	+	1	Parent=Os04t0410300-01
Chr04	irgsp1_rep	CDS	20278980	20279085	.	+	1	Parent=Os04t0410300-01
Chr04	irgsp1_rep	three_prime_UTR	20279086	20279226	.	+	.	Parent=Os04t0410300-01
Chr04	irgsp1_rep	mRNA	20280360	20281976	.	+	.	ID=Os04t0410400-01;Name=Os04t0410400-01;Locus_id=Os04g0410400;Note=Root cap family protein.;Transcript_evidence=AK108077 (DDBJ%2C Best hit);ORF_evidence=Q01JC0 (UniProt);InterPro=Root cap (IPR009646);NIAS_FLcDNA=002-138-E01;Expression=AK108077;TENOR=Os04t0410400-01;KEGG=Os04t0410400-01
Chr04	irgsp1_rep	five_prime_UTR	20280360	20280444	.	+	.	Parent=Os04t0410400-01
Chr04	irgsp1_rep	CDS	20280445	20280727	.	+	0	Parent=Os04t0410400-01
Chr04	irgsp1_rep	CDS	20280864	20281648	.	+	2	Parent=Os04t0410400-01
Chr04	irgsp1_rep	three_prime_UTR	20281649	20281976	.	+	.	Parent=Os04t0410400-01
Chr04	irgsp1_rep	mRNA	20283513	20285410	.	-	.	ID=Os04t0410600-01;Name=Os04t0410600-01;Locus_id=Os04g0410600;CGSNL Gene Symbol=PAP21A;CGSNL Gene Name=PURPLE ACID PHOSPHATASE 21A;Oryzabase Gene Symbol Synonym(s)=OsPAP21a;Oryzabase Gene Name Synonym(s)=purple acid phosphatase 21a;Note=Similar to Purple acid phosphatase.;Transcript_evidence=AK121649 (DDBJ%2C Best hit);ORF_evidence=Q01JB9 (UniProt);GO=Molecular Function: acid phosphatase activity (GO:0003993),Molecular Function: protein binding (GO:0005515),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: metal ion binding (GO:0046872);InterPro=Fibronectin%2C type III (IPR003961),Metallophosphoesterase domain (IPR004843),Purple acid phosphatase-like%2C N-terminal (IPR008963),Purple acid phosphatase%2C N-terminal (IPR015914);NIAS_FLcDNA=J033060H09;Oryzabase=11390;Expression=AK121649;TENOR=Os04t0410600-01;KEGG=Os04t0410600-01
Chr04	irgsp1_rep	five_prime_UTR	20285371	20285410	.	-	.	Parent=Os04t0410600-01
Chr04	irgsp1_rep	CDS	20285209	20285370	.	-	0	Parent=Os04t0410600-01
Chr04	irgsp1_rep	CDS	20284245	20285117	.	-	0	Parent=Os04t0410600-01
Chr04	irgsp1_rep	CDS	20284062	20284150	.	-	0	Parent=Os04t0410600-01
Chr04	irgsp1_rep	CDS	20283740	20283974	.	-	1	Parent=Os04t0410600-01
Chr04	irgsp1_rep	three_prime_UTR	20283513	20283739	.	-	.	Parent=Os04t0410600-01
Chr04	irgsp1_rep	mRNA	20282714	20286792	.	+	.	ID=Os04t0410700-00;Name=Os04t0410700-00;Locus_id=Os04g0410700;Note=Hypothetical protein.;Transcript_evidence=AK332428 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0410700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	20282714	20282929	.	+	0	Parent=Os04t0410700-00
Chr04	irgsp1_rep	CDS	20284308	20284739	.	+	0	Parent=Os04t0410700-00
Chr04	irgsp1_rep	CDS	20286504	20286792	.	+	0	Parent=Os04t0410700-00
Chr04	irgsp1_rep	mRNA	20304278	20310009	.	-	.	ID=Os04t0411100-01;Name=Os04t0411100-01;Locus_id=Os04g0411100;Note=Hypothetical conserved gene.;Transcript_evidence=AK100599 (DDBJ%2C Best hit);ORF_evidence=B9FF22 (UniProt);NIAS_FLcDNA=J023107C05;Expression=AK100599;TENOR=Os04t0411100-01;KEGG=Os04t0411100-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	20309888	20310009	.	-	.	Parent=Os04t0411100-01
Chr04	irgsp1_rep	five_prime_UTR	20307995	20308001	.	-	.	Parent=Os04t0411100-01
Chr04	irgsp1_rep	CDS	20307990	20307994	.	-	0	Parent=Os04t0411100-01
Chr04	irgsp1_rep	CDS	20306893	20307010	.	-	1	Parent=Os04t0411100-01
Chr04	irgsp1_rep	CDS	20305266	20305379	.	-	0	Parent=Os04t0411100-01
Chr04	irgsp1_rep	CDS	20304637	20304828	.	-	0	Parent=Os04t0411100-01
Chr04	irgsp1_rep	three_prime_UTR	20304278	20304636	.	-	.	Parent=Os04t0411100-01
Chr04	irgsp1_rep	mRNA	20300878	20310009	.	-	.	ID=Os04t0411100-02;Name=Os04t0411100-02;Locus_id=Os04g0411100;Note=Conserved hypothetical protein.;Transcript_evidence=AK069797 (DDBJ%2C Best hit);ORF_evidence=B9FF22 (UniProt);NIAS_FLcDNA=J023028A18;TENOR=Os04t0411100-02;B5toI1=Exon-intron structures and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	20309888	20310009	.	-	.	Parent=Os04t0411100-02
Chr04	irgsp1_rep	five_prime_UTR	20305659	20307010	.	-	.	Parent=Os04t0411100-02
Chr04	irgsp1_rep	CDS	20305654	20305658	.	-	0	Parent=Os04t0411100-02
Chr04	irgsp1_rep	CDS	20305450	20305567	.	-	1	Parent=Os04t0411100-02
Chr04	irgsp1_rep	CDS	20305266	20305379	.	-	0	Parent=Os04t0411100-02
Chr04	irgsp1_rep	CDS	20304641	20304828	.	-	0	Parent=Os04t0411100-02
Chr04	irgsp1_rep	CDS	20300984	20301104	.	-	1	Parent=Os04t0411100-02
Chr04	irgsp1_rep	three_prime_UTR	20300878	20300983	.	-	.	Parent=Os04t0411100-02
Chr04	irgsp1_rep	mRNA	20305505	20306039	.	+	.	ID=Os04t0411200-00;Name=Os04t0411200-00;Locus_id=Os04g0411200;Note=Similar to ZPR3 (LITTLE ZIPPER 3)%3B protein binding.;Transcript_evidence=FP099759 (DDBJ);ORF_evidence=NP_190845.1 (RefSeq);TENOR=Os04t0411200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	20305505	20305540	.	+	.	Parent=Os04t0411200-00
Chr04	irgsp1_rep	CDS	20305541	20305840	.	+	0	Parent=Os04t0411200-00
Chr04	irgsp1_rep	three_prime_UTR	20305841	20306039	.	+	.	Parent=Os04t0411200-00
Chr04	irgsp1_rep	mRNA	20310155	20318136	.	+	.	ID=Os04t0411300-01;Name=Os04t0411300-01;Locus_id=Os04g0411300;Note=Conserved hypothetical protein.;Transcript_evidence=AK070396 (DDBJ%2C Best hit);ORF_evidence=Q6K4A0 (UniProt);NIAS_FLcDNA=J023049G10;TENOR=Os04t0411300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	20310155	20310494	.	+	.	Parent=Os04t0411300-01
Chr04	irgsp1_rep	five_prime_UTR	20311019	20311120	.	+	.	Parent=Os04t0411300-01
Chr04	irgsp1_rep	five_prime_UTR	20314023	20314236	.	+	.	Parent=Os04t0411300-01
Chr04	irgsp1_rep	five_prime_UTR	20316033	20317456	.	+	.	Parent=Os04t0411300-01
Chr04	irgsp1_rep	CDS	20317457	20317546	.	+	0	Parent=Os04t0411300-01
Chr04	irgsp1_rep	three_prime_UTR	20317547	20318136	.	+	.	Parent=Os04t0411300-01
Chr04	irgsp1_rep	mRNA	20319029	20321385	.	-	.	ID=Os04t0411400-01;Name=Os04t0411400-01;Locus_id=Os04g0411400;CGSNL Gene Symbol=RCN4;CGSNL Gene Name=RICE TERMINAL FLOWER 1/CENTRORADIALIS HOMOLOG 4;Oryzabase Gene Symbol Synonym(s)=Rcn4%2C OsRCN4;Oryzabase Gene Name Synonym(s)=RICE CENTRORADIALIS 4;Note=Similar to Terminal flower 1-like protein.;Transcript_evidence=AK110622 (DDBJ%2C Best hit);ORF_evidence=Q01JB8 (UniProt);InterPro=Phosphatidylethanolamine-binding%2C conserved site (IPR001858),Phosphatidylethanolamine-binding protein PEBP (IPR008914);NIAS_FLcDNA=002-169-A07;Oryzabase=11880;Expression=AK110622;TENOR=Os04t0411400-01;KEGG=Os04t0411400-01
Chr04	irgsp1_rep	five_prime_UTR	20321231	20321385	.	-	.	Parent=Os04t0411400-01
Chr04	irgsp1_rep	CDS	20321030	20321230	.	-	0	Parent=Os04t0411400-01
Chr04	irgsp1_rep	CDS	20320789	20320850	.	-	0	Parent=Os04t0411400-01
Chr04	irgsp1_rep	CDS	20320135	20320175	.	-	1	Parent=Os04t0411400-01
Chr04	irgsp1_rep	CDS	20319702	20319919	.	-	2	Parent=Os04t0411400-01
Chr04	irgsp1_rep	three_prime_UTR	20319029	20319701	.	-	.	Parent=Os04t0411400-01
Chr04	irgsp1_rep	mRNA	20341271	20341857	.	+	.	ID=Os04t0411651-00;Name=Os04t0411651-00;Locus_id=Os04g0411651;Note=Hypothetical gene.;Transcript_evidence=AK241167 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;TENOR=Os04t0411651-00;KEGG=Os04t0411651-00
Chr04	irgsp1_rep	CDS	20341271	20341669	.	+	0	Parent=Os04t0411651-00
Chr04	irgsp1_rep	three_prime_UTR	20341670	20341857	.	+	.	Parent=Os04t0411651-00
Chr04	irgsp1_rep	mRNA	20343298	20344950	.	+	.	ID=Os04t0411800-01;Name=Os04t0411800-01;Locus_id=Os04g0411800;Note=Similar to H0717B12.5 protein.;Transcript_evidence=AK102032 (DDBJ%2C Best hit);ORF_evidence=Q01JB7 (UniProt);NIAS_FLcDNA=J033081A11;TENOR=Os04t0411800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	20343298	20343337	.	+	.	Parent=Os04t0411800-01
Chr04	irgsp1_rep	CDS	20343338	20343589	.	+	0	Parent=Os04t0411800-01
Chr04	irgsp1_rep	CDS	20343747	20343958	.	+	0	Parent=Os04t0411800-01
Chr04	irgsp1_rep	CDS	20344054	20344315	.	+	1	Parent=Os04t0411800-01
Chr04	irgsp1_rep	CDS	20344425	20344733	.	+	0	Parent=Os04t0411800-01
Chr04	irgsp1_rep	three_prime_UTR	20344734	20344950	.	+	.	Parent=Os04t0411800-01
Chr04	irgsp1_rep	mRNA	20348436	20353555	.	+	.	ID=Os04t0412000-01;Name=Os04t0412000-01;Locus_id=Os04g0412000;Note=Hypothetical protein.;Transcript_evidence=AK243544 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J100078M24;TENOR=Os04t0412000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	20348436	20348580	.	+	0	Parent=Os04t0412000-01
Chr04	irgsp1_rep	CDS	20351682	20351929	.	+	2	Parent=Os04t0412000-01
Chr04	irgsp1_rep	CDS	20352159	20352370	.	+	0	Parent=Os04t0412000-01
Chr04	irgsp1_rep	CDS	20352487	20352748	.	+	1	Parent=Os04t0412000-01
Chr04	irgsp1_rep	CDS	20352839	20353150	.	+	0	Parent=Os04t0412000-01
Chr04	irgsp1_rep	three_prime_UTR	20353151	20353555	.	+	.	Parent=Os04t0412000-01
Chr04	irgsp1_rep	mRNA	20358641	20359628	.	+	.	ID=Os04t0412100-01;Name=Os04t0412100-01;Locus_id=Os04g0412100;Note=Similar to H0717B12.8 protein.;Transcript_evidence=AK108223 (DDBJ%2C Best hit);ORF_evidence=Q01JB4 (UniProt);NIAS_FLcDNA=002-140-E12;Expression=AK108223;TENOR=Os04t0412100-01;KEGG=Os04t0412100-01
Chr04	irgsp1_rep	five_prime_UTR	20358641	20358744	.	+	.	Parent=Os04t0412100-01
Chr04	irgsp1_rep	CDS	20358745	20359398	.	+	0	Parent=Os04t0412100-01
Chr04	irgsp1_rep	three_prime_UTR	20359399	20359628	.	+	.	Parent=Os04t0412100-01
Chr04	irgsp1_rep	mRNA	20365639	20369223	.	+	.	ID=Os04t0412200-01;Name=Os04t0412200-01;Locus_id=Os04g0412200;Oryzabase Gene Name Synonym(s)=Ferredoxin I;Note=Similar to Ferredoxin I.;Transcript_evidence=AK120232 (DDBJ%2C Best hit);ORF_evidence=Q01JB3 (UniProt);GO=Biological Process: electron transport chain (GO:0022900),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: iron-sulfur cluster binding (GO:0051536),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=Ferredoxin (IPR001041),2Fe-2S ferredoxin%2C iron-sulphur binding site (IPR006058),Ferredoxin [2Fe-2S]%2C plant (IPR010241),Beta-grasp fold%2C ferredoxin-type (IPR012675);NIAS_FLcDNA=J013043H21;Oryzabase=12444;Expression=AK120232;TENOR=Os04t0412200-01;KEGG=Os04t0412200-01
Chr04	irgsp1_rep	five_prime_UTR	20365639	20365807	.	+	.	Parent=Os04t0412200-01
Chr04	irgsp1_rep	five_prime_UTR	20368559	20368583	.	+	.	Parent=Os04t0412200-01
Chr04	irgsp1_rep	CDS	20368584	20369042	.	+	0	Parent=Os04t0412200-01
Chr04	irgsp1_rep	three_prime_UTR	20369043	20369223	.	+	.	Parent=Os04t0412200-01
Chr04	irgsp1_rep	mRNA	20365675	20369177	.	+	.	ID=Os04t0412200-02;Name=Os04t0412200-02;Locus_id=Os04g0412200;Oryzabase Gene Name Synonym(s)=Ferredoxin I;Note=Similar to Ferredoxin I.;Transcript_evidence=AK062016 (DDBJ%2C Best hit);ORF_evidence=Q01JB3 (UniProt);GO=Biological Process: electron transport chain (GO:0022900),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: iron-sulfur cluster binding (GO:0051536),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=Ferredoxin (IPR001041),2Fe-2S ferredoxin%2C iron-sulphur binding site (IPR006058),Ferredoxin [2Fe-2S]%2C plant (IPR010241),Beta-grasp fold%2C ferredoxin-type (IPR012675);NIAS_FLcDNA=001-043-F06;Oryzabase=12444;Expression=AK062016;TENOR=Os04t0412200-02;KEGG=Os04t0412200-02
Chr04	irgsp1_rep	five_prime_UTR	20365675	20365807	.	+	.	Parent=Os04t0412200-02
Chr04	irgsp1_rep	five_prime_UTR	20368559	20368583	.	+	.	Parent=Os04t0412200-02
Chr04	irgsp1_rep	CDS	20368584	20369042	.	+	0	Parent=Os04t0412200-02
Chr04	irgsp1_rep	three_prime_UTR	20369043	20369177	.	+	.	Parent=Os04t0412200-02
Chr04	irgsp1_rep	mRNA	20368516	20369054	.	-	.	ID=Os04t0412225-00;Name=Os04t0412225-00;Locus_id=Os04g0412225;Note=Non-protein coding transcript.;Transcript_evidence=AK370418 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0412225-00
Chr04	irgsp1_rep	exon	20368516	20369054	.	-	.	Parent=Os04t0412225-00
Chr04	irgsp1_rep	mRNA	20371930	20372843	.	-	.	ID=Os04t0412250-01;Name=Os04t0412250-01;Locus_id=Os04g0412250;Note=Non-protein coding transcript.;Transcript_evidence=AK287569 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065030L09;TENOR=Os04t0412250-01
Chr04	irgsp1_rep	exon	20371930	20372843	.	-	.	Parent=Os04t0412250-01
Chr04	irgsp1_rep	mRNA	20372912	20376750	.	+	.	ID=Os04t0412300-01;Name=Os04t0412300-01;Locus_id=Os04g0412300;Note=Similar to H0717B12.10 protein.;Transcript_evidence=AK110902 (DDBJ%2C Best hit);ORF_evidence=Q01IT5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=002-173-B03;TENOR=Os04t0412300-01
Chr04	irgsp1_rep	five_prime_UTR	20372912	20373286	.	+	.	Parent=Os04t0412300-01
Chr04	irgsp1_rep	CDS	20373287	20373374	.	+	0	Parent=Os04t0412300-01
Chr04	irgsp1_rep	CDS	20375617	20376750	.	+	2	Parent=Os04t0412300-01
Chr04	irgsp1_rep	mRNA	20373145	20377754	.	+	.	ID=Os04t0412300-02;Name=Os04t0412300-02;Locus_id=Os04g0412300;Note=Glycoside hydrolase%2C family 17 protein.;Transcript_evidence=AK121151 (DDBJ%2C Best hit);ORF_evidence=Q01IT5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J023078I08;Expression=AK121151;TENOR=Os04t0412300-02;KEGG=Os04t0412300-02
Chr04	irgsp1_rep	five_prime_UTR	20373145	20373286	.	+	.	Parent=Os04t0412300-02
Chr04	irgsp1_rep	CDS	20373287	20373374	.	+	0	Parent=Os04t0412300-02
Chr04	irgsp1_rep	CDS	20375617	20376653	.	+	2	Parent=Os04t0412300-02
Chr04	irgsp1_rep	CDS	20377041	20377097	.	+	0	Parent=Os04t0412300-02
Chr04	irgsp1_rep	three_prime_UTR	20377098	20377754	.	+	.	Parent=Os04t0412300-02
Chr04	irgsp1_rep	mRNA	20380473	20381653	.	-	.	ID=Os04t0412350-01;Name=Os04t0412350-01;Locus_id=Os04g0412350;Note=Hypothetical protein.;Transcript_evidence=AK111482 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-188-B08;Expression=AK111482;TENOR=Os04t0412350-01;KEGG=Os04t0412350-01
Chr04	irgsp1_rep	five_prime_UTR	20381447	20381653	.	-	.	Parent=Os04t0412350-01
Chr04	irgsp1_rep	CDS	20381135	20381446	.	-	0	Parent=Os04t0412350-01
Chr04	irgsp1_rep	three_prime_UTR	20380473	20381134	.	-	.	Parent=Os04t0412350-01
Chr04	irgsp1_rep	mRNA	20388100	20390005	.	+	.	ID=Os04t0412500-01;Name=Os04t0412500-01;Locus_id=Os04g0412500;CGSNL Gene Symbol=ALPHACA2;CGSNL Gene Name=ALPHA-CARBONIC ANHYDRASE 2;Oryzabase Gene Symbol Synonym(s)=OsalphaCA2%2C alphaCA2;Oryzabase Gene Name Synonym(s)=alpha-carbonic anhydrase 2;Note=Similar to OSIGBa0134P10.2 protein.;Transcript_evidence=AK059525 (DDBJ%2C Best hit);ORF_evidence=Q01IT4 (UniProt);GO=Biological Process: one-carbon metabolic process (GO:0006730),Molecular Function: carbonate dehydratase activity (GO:0004089),Molecular Function: zinc ion binding (GO:0008270);InterPro=Carbonic anhydrase%2C alpha-class%2C catalytic domain (IPR001148),Carbonic anhydrase%2C alpha-class%2C conserved site (IPR018338),Carbonic anhydrase%2C alpha-class (IPR023561);NIAS_FLcDNA=001-029-D02;Oryzabase=21647;TENOR=Os04t0412500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	20388100	20388167	.	+	.	Parent=Os04t0412500-01
Chr04	irgsp1_rep	CDS	20388168	20388246	.	+	0	Parent=Os04t0412500-01
Chr04	irgsp1_rep	CDS	20388471	20388679	.	+	2	Parent=Os04t0412500-01
Chr04	irgsp1_rep	CDS	20388775	20388881	.	+	0	Parent=Os04t0412500-01
Chr04	irgsp1_rep	CDS	20389003	20389105	.	+	1	Parent=Os04t0412500-01
Chr04	irgsp1_rep	CDS	20389237	20389419	.	+	0	Parent=Os04t0412500-01
Chr04	irgsp1_rep	CDS	20389556	20389711	.	+	0	Parent=Os04t0412500-01
Chr04	irgsp1_rep	three_prime_UTR	20389712	20390005	.	+	.	Parent=Os04t0412500-01
Chr04	irgsp1_rep	mRNA	20391988	20393083	.	+	.	ID=Os04t0412700-01;Name=Os04t0412700-01;Locus_id=Os04g0412700;Note=Carbonic anhydrase%2C eukaryotic family protein.;Transcript_evidence=AK108347 (DDBJ%2C Best hit);ORF_evidence=Q01IT3 (UniProt);NIAS_FLcDNA=002-142-B08;Expression=AK108347;TENOR=Os04t0412700-01;KEGG=Os04t0412700-01
Chr04	irgsp1_rep	five_prime_UTR	20391988	20392031	.	+	.	Parent=Os04t0412700-01
Chr04	irgsp1_rep	CDS	20392032	20392817	.	+	0	Parent=Os04t0412700-01
Chr04	irgsp1_rep	three_prime_UTR	20392818	20393083	.	+	.	Parent=Os04t0412700-01
Chr04	irgsp1_rep	mRNA	20393546	20395280	.	+	.	ID=Os04t0412800-01;Name=Os04t0412800-01;Locus_id=Os04g0412800;Oryzabase Gene Symbol Synonym(s)=OsGRL8;Oryzabase Gene Name Synonym(s)=GRX-like protein 8%2C glutaredoxin-like protein 8;Note=Thioredoxin fold domain containing protein.;Transcript_evidence=AK060508 (DDBJ%2C Best hit);ORF_evidence=Q01IT2 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin (IPR002109),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=001-019-B12;Oryzabase=13598;Expression=AK060508;TENOR=Os04t0412800-01;KEGG=Os04t0412800-01
Chr04	irgsp1_rep	five_prime_UTR	20393546	20393717	.	+	.	Parent=Os04t0412800-01
Chr04	irgsp1_rep	CDS	20393718	20395064	.	+	0	Parent=Os04t0412800-01
Chr04	irgsp1_rep	three_prime_UTR	20395065	20395280	.	+	.	Parent=Os04t0412800-01
Chr04	irgsp1_rep	mRNA	20398097	20405746	.	+	.	ID=Os04t0412900-01;Name=Os04t0412900-01;Locus_id=Os04g0412900;Note=Zinc finger%2C Sec23/Sec24-type domain containing protein.;Transcript_evidence=AK073418 (DDBJ%2C Best hit);ORF_evidence=Q01IT1 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888),Cellular Component: COPII vesicle coat (GO:0030127),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=von Willebrand factor%2C type A (IPR002035),Zinc finger%2C Sec23/Sec24-type (IPR006895),Sec23/Sec24%2C trunk domain (IPR006896),Sec23/Sec24%2C helical domain (IPR006900),Sec23/Sec24 beta-sandwich (IPR012990);NIAS_FLcDNA=J033044C16;Expression=AK073418;TENOR=Os04t0412900-01;KEGG=Os04t0412900-01
Chr04	irgsp1_rep	five_prime_UTR	20398097	20398248	.	+	.	Parent=Os04t0412900-01
Chr04	irgsp1_rep	CDS	20398249	20398582	.	+	0	Parent=Os04t0412900-01
Chr04	irgsp1_rep	CDS	20398672	20398731	.	+	2	Parent=Os04t0412900-01
Chr04	irgsp1_rep	CDS	20399305	20399358	.	+	2	Parent=Os04t0412900-01
Chr04	irgsp1_rep	CDS	20399472	20399644	.	+	2	Parent=Os04t0412900-01
Chr04	irgsp1_rep	CDS	20399786	20399972	.	+	0	Parent=Os04t0412900-01
Chr04	irgsp1_rep	CDS	20400105	20400250	.	+	2	Parent=Os04t0412900-01
Chr04	irgsp1_rep	CDS	20400323	20400477	.	+	0	Parent=Os04t0412900-01
Chr04	irgsp1_rep	CDS	20400895	20400976	.	+	1	Parent=Os04t0412900-01
Chr04	irgsp1_rep	CDS	20401080	20401195	.	+	0	Parent=Os04t0412900-01
Chr04	irgsp1_rep	CDS	20402003	20402098	.	+	1	Parent=Os04t0412900-01
Chr04	irgsp1_rep	CDS	20402556	20402679	.	+	1	Parent=Os04t0412900-01
Chr04	irgsp1_rep	CDS	20403807	20404075	.	+	0	Parent=Os04t0412900-01
Chr04	irgsp1_rep	CDS	20404534	20404745	.	+	1	Parent=Os04t0412900-01
Chr04	irgsp1_rep	CDS	20405177	20405388	.	+	2	Parent=Os04t0412900-01
Chr04	irgsp1_rep	three_prime_UTR	20405389	20405746	.	+	.	Parent=Os04t0412900-01
Chr04	irgsp1_rep	mRNA	20406006	20410406	.	-	.	ID=Os04t0413000-00;Name=Os04t0413000-00;Locus_id=Os04g0413000;CGSNL Gene Symbol=ABCB27;CGSNL Gene Name=ABC TRANSPORTER B FAMILY MEMBER 27;Oryzabase Gene Symbol Synonym(s)=OsABCB27;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCB subgroup member 27;Note=Similar to OSIGBa0134P10.6 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01IT0 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);Oryzabase=11945;TENOR=Os04t0413000-00;KEGG=Os04t0413000-00
Chr04	irgsp1_rep	CDS	20409636	20410406	.	-	0	Parent=Os04t0413000-00
Chr04	irgsp1_rep	CDS	20409170	20409256	.	-	0	Parent=Os04t0413000-00
Chr04	irgsp1_rep	CDS	20408961	20409068	.	-	0	Parent=Os04t0413000-00
Chr04	irgsp1_rep	CDS	20408616	20408882	.	-	0	Parent=Os04t0413000-00
Chr04	irgsp1_rep	CDS	20407744	20407827	.	-	0	Parent=Os04t0413000-00
Chr04	irgsp1_rep	CDS	20407524	20407586	.	-	0	Parent=Os04t0413000-00
Chr04	irgsp1_rep	CDS	20407370	20407426	.	-	0	Parent=Os04t0413000-00
Chr04	irgsp1_rep	CDS	20406522	20406709	.	-	0	Parent=Os04t0413000-00
Chr04	irgsp1_rep	CDS	20406262	20406391	.	-	1	Parent=Os04t0413000-00
Chr04	irgsp1_rep	CDS	20406006	20406167	.	-	0	Parent=Os04t0413000-00
Chr04	irgsp1_rep	mRNA	20411176	20411853	.	-	.	ID=Os04t0413100-01;Name=Os04t0413100-01;Locus_id=Os04g0413100;Note=Similar to OSIGBa0134P10.7 protein.;Transcript_evidence=AK120745 (DDBJ%2C Best hit);ORF_evidence=Q01IS9 (UniProt);InterPro=Protein of unknown function DUF3049 (IPR021410);NIAS_FLcDNA=J023004I05;Expression=AK120745;TENOR=Os04t0413100-01;KEGG=Os04t0413100-01
Chr04	irgsp1_rep	CDS	20411305	20411853	.	-	0	Parent=Os04t0413100-01
Chr04	irgsp1_rep	three_prime_UTR	20411176	20411304	.	-	.	Parent=Os04t0413100-01
Chr04	irgsp1_rep	mRNA	20412316	20415240	.	+	.	ID=Os04t0413200-01;Name=Os04t0413200-01;Locus_id=Os04g0413200;Oryzabase Gene Symbol Synonym(s)=OSINV4%2C OsINV4%2C INV4%2C OsCIN3;Oryzabase Gene Name Synonym(s)=cell wall invertase 4%2C cell-wall invertase 3;Note=Similar to Cell wall invertase (EC 3.2.1.26).;Transcript_evidence=AK120779 (DDBJ%2C Best hit);ORF_evidence=Q0JDC6 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 32 (IPR001362),Concanavalin A-like lectin/glucanase (IPR008985),Glycosyl hydrolases family 32%2C N-terminal (IPR013148),Glycosyl hydrolase family 32%2C C-terminal (IPR013189),Glycoside hydrolase%2C family 32%2C active site (IPR018053),Glycosyl hydrolase family 43%2C five-bladed beta-propellor domain (IPR023296);NIAS_FLcDNA=J023009M11;Oryzabase=11685;Expression=AK120779;TENOR=Os04t0413200-01;KEGG=Os04t0413200-01 (EC:3.2.1.26)
Chr04	irgsp1_rep	five_prime_UTR	20412316	20412374	.	+	.	Parent=Os04t0413200-01
Chr04	irgsp1_rep	CDS	20412375	20412555	.	+	0	Parent=Os04t0413200-01
Chr04	irgsp1_rep	CDS	20412657	20412665	.	+	2	Parent=Os04t0413200-01
Chr04	irgsp1_rep	CDS	20412788	20413671	.	+	2	Parent=Os04t0413200-01
Chr04	irgsp1_rep	CDS	20413754	20413912	.	+	0	Parent=Os04t0413200-01
Chr04	irgsp1_rep	CDS	20414015	20414259	.	+	0	Parent=Os04t0413200-01
Chr04	irgsp1_rep	CDS	20414367	20414460	.	+	1	Parent=Os04t0413200-01
Chr04	irgsp1_rep	CDS	20414587	20414775	.	+	0	Parent=Os04t0413200-01
Chr04	irgsp1_rep	three_prime_UTR	20414776	20415240	.	+	.	Parent=Os04t0413200-01
Chr04	irgsp1_rep	mRNA	20412374	20414838	.	-	.	ID=Os04t0413301-00;Name=Os04t0413301-00;Locus_id=Os04g0413301;Note=Hypothetical protein.;Transcript_evidence=tplb0057c18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0413301-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	20414586	20414838	.	-	.	Parent=Os04t0413301-00
Chr04	irgsp1_rep	five_prime_UTR	20414459	20414459	.	-	.	Parent=Os04t0413301-00
Chr04	irgsp1_rep	CDS	20414355	20414458	.	-	0	Parent=Os04t0413301-00
Chr04	irgsp1_rep	CDS	20414009	20414252	.	-	1	Parent=Os04t0413301-00
Chr04	irgsp1_rep	CDS	20413729	20413906	.	-	0	Parent=Os04t0413301-00
Chr04	irgsp1_rep	CDS	20412765	20413655	.	-	2	Parent=Os04t0413301-00
Chr04	irgsp1_rep	CDS	20412374	20412544	.	-	2	Parent=Os04t0413301-00
Chr04	irgsp1_rep	mRNA	20422171	20426921	.	+	.	ID=Os04t0413500-01;Name=Os04t0413500-01;Locus_id=Os04g0413500;RAP-DB Gene Symbol Synonym(s)=GIF1%2C gif1%2C CIN2%2C OsCIN2%2C OsGIF1%2C WB1;RAP-DB Gene Name Synonym(s)=GRAIN  INCOMPLETE FILLING 1%2C grain incomplete filling 1%2C "Beta-fructofuranosidase%2C insoluble isoenzyme 2"%2C Sucrose hydrolase 2%2C Invertase 2%2C Cell wall beta-fructosidase 2%2C cell-wall invertase 2%2C White Belly 1;CGSNL Gene Symbol=GIF1;CGSNL Gene Name=GRAIN  INCOMPLETE FILLING 1;Oryzabase Gene Symbol Synonym(s)=gif1%2C CIN2%2C OsCIN2%2C OsGIF1%2C WB1%2C OsWB1;Oryzabase Gene Name Synonym(s)=grain incomplete filling 1%2C "Beta-fructofuranosidase%2C insoluble isoenzyme 2"%2C Sucrose hydrolase 2%2C Invertase 2%2C Cell wall beta-fructosidase 2%2C cell-wall invertase 2%2C White Belly 1;Note=Cell-wall invertase%2C Carbon partitioning during early grain filling%2C Regulation of endosperm development;Transcript_evidence=EU095553 (Genbank),AY578159 (Genbank),AK072276 (Genbank);ORF_evidence=B5KNJ4 (UniProt),Q0JDC5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 32 (IPR001362),Concanavalin A-like lectin/glucanase (IPR008985),Glycosyl hydrolases family 32%2C N-terminal (IPR013148),Glycosyl hydrolase family 32%2C C-terminal (IPR013189),Glycoside hydrolase%2C family 32%2C active site (IPR018053),Glycosyl hydrolase family 43%2C five-bladed beta-propellor domain (IPR023296);NIAS_FLcDNA=J023010O04;Manual Curation=October 21%2C 2019;Literature_PMID=30042352,18820698,15759120;Oryzabase=8137;Expression=AK072276;TENOR=Os04t0413500-01;KEGG=Os04t0413500-01
Chr04	irgsp1_rep	five_prime_UTR	20422171	20422221	.	+	.	Parent=Os04t0413500-01
Chr04	irgsp1_rep	CDS	20422222	20422426	.	+	0	Parent=Os04t0413500-01
Chr04	irgsp1_rep	CDS	20423070	20423078	.	+	2	Parent=Os04t0413500-01
Chr04	irgsp1_rep	CDS	20423566	20424446	.	+	2	Parent=Os04t0413500-01
Chr04	irgsp1_rep	CDS	20424836	20424997	.	+	0	Parent=Os04t0413500-01
Chr04	irgsp1_rep	CDS	20425749	20426008	.	+	0	Parent=Os04t0413500-01
Chr04	irgsp1_rep	CDS	20426117	20426207	.	+	1	Parent=Os04t0413500-01
Chr04	irgsp1_rep	CDS	20426494	20426682	.	+	0	Parent=Os04t0413500-01
Chr04	irgsp1_rep	three_prime_UTR	20426683	20426921	.	+	.	Parent=Os04t0413500-01
Chr04	irgsp1_rep	mRNA	20432529	20435754	.	-	.	ID=Os04t0413600-01;Name=Os04t0413600-01;Locus_id=Os04g0413600;Oryzabase Gene Name Synonym(s)=Ribosomal protein S14;Note=Similar to 40S ribosomal protein S14 (Clone MCH2).;Transcript_evidence=AK121192 (DDBJ%2C Best hit);ORF_evidence=Q01IS6 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S11 (IPR001971),Ribosomal S11%2C conserved site (IPR018102);NIAS_FLcDNA=J023086F11;Oryzabase=17687;Expression=AK121192;TENOR=Os04t0413600-01;KEGG=Os04t0413600-01
Chr04	irgsp1_rep	five_prime_UTR	20435669	20435754	.	-	.	Parent=Os04t0413600-01
Chr04	irgsp1_rep	CDS	20435666	20435668	.	-	0	Parent=Os04t0413600-01
Chr04	irgsp1_rep	CDS	20435432	20435554	.	-	0	Parent=Os04t0413600-01
Chr04	irgsp1_rep	CDS	20435278	20435323	.	-	0	Parent=Os04t0413600-01
Chr04	irgsp1_rep	CDS	20433429	20433514	.	-	2	Parent=Os04t0413600-01
Chr04	irgsp1_rep	CDS	20433227	20433356	.	-	0	Parent=Os04t0413600-01
Chr04	irgsp1_rep	CDS	20432696	20432763	.	-	2	Parent=Os04t0413600-01
Chr04	irgsp1_rep	three_prime_UTR	20432529	20432695	.	-	.	Parent=Os04t0413600-01
Chr04	irgsp1_rep	mRNA	20443290	20444608	.	+	.	ID=Os04t0413900-01;Name=Os04t0413900-01;Locus_id=Os04g0413900;RAP-DB Gene Symbol Synonym(s)=OsS40-6;RAP-DB Gene Name Synonym(s)=S40 protein 6;CGSNL Gene Symbol=S40-6;CGSNL Gene Name=S40 PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsS40-6;Oryzabase Gene Name Synonym(s)=S40 protein 6;Note=A member of S40 gene family%2C Leaf senescence;Transcript_evidence=AK100104;ORF_evidence=Q7XVJ5;InterPro=Senescence regulator S40 (IPR007608);NIAS_FLcDNA=J023004L16;Manual Curation=November 8%2C 2019;Literature_PMID=31046677;Oryzabase=22076;Expression=AK100104;TENOR=Os04t0413900-01;KEGG=Os04t0413900-01;Subcellular location=cytoplasm (GO:0005737) [several speckles]
Chr04	irgsp1_rep	five_prime_UTR	20443290	20443540	.	+	.	Parent=Os04t0413900-01
Chr04	irgsp1_rep	CDS	20443541	20444278	.	+	0	Parent=Os04t0413900-01
Chr04	irgsp1_rep	three_prime_UTR	20444279	20444608	.	+	.	Parent=Os04t0413900-01
Chr04	irgsp1_rep	mRNA	20446856	20450972	.	-	.	ID=Os04t0413950-00;Name=Os04t0413950-00;Locus_id=Os04g0413950;Note=Non-protein coding transcript.;Transcript_evidence=tplb0045l19 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os04t0413950-00
Chr04	irgsp1_rep	exon	20450822	20450972	.	-	.	Parent=Os04t0413950-00
Chr04	irgsp1_rep	exon	20450405	20450517	.	-	.	Parent=Os04t0413950-00
Chr04	irgsp1_rep	exon	20450161	20450323	.	-	.	Parent=Os04t0413950-00
Chr04	irgsp1_rep	exon	20449900	20450005	.	-	.	Parent=Os04t0413950-00
Chr04	irgsp1_rep	exon	20449047	20449207	.	-	.	Parent=Os04t0413950-00
Chr04	irgsp1_rep	exon	20448830	20448958	.	-	.	Parent=Os04t0413950-00
Chr04	irgsp1_rep	exon	20448617	20448707	.	-	.	Parent=Os04t0413950-00
Chr04	irgsp1_rep	exon	20447888	20448123	.	-	.	Parent=Os04t0413950-00
Chr04	irgsp1_rep	exon	20446856	20447065	.	-	.	Parent=Os04t0413950-00
Chr04	irgsp1_rep	mRNA	20446867	20451616	.	+	.	ID=Os04t0414000-00;Name=Os04t0414000-00;Locus_id=Os04g0414000;Note=Similar to OSIGBa0134P10.12 protein.;Transcript_evidence=AK363097 (DDBJ);ORF_evidence=Q01IS4 (UniProt);InterPro=Protein of unknown function DUF1022 (IPR009367);TENOR=Os04t0414000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	20446867	20447049	.	+	0	Parent=Os04t0414000-00
Chr04	irgsp1_rep	CDS	20447871	20448109	.	+	0	Parent=Os04t0414000-00
Chr04	irgsp1_rep	CDS	20448603	20448699	.	+	1	Parent=Os04t0414000-00
Chr04	irgsp1_rep	CDS	20448823	20448969	.	+	0	Parent=Os04t0414000-00
Chr04	irgsp1_rep	CDS	20449063	20449128	.	+	0	Parent=Os04t0414000-00
Chr04	irgsp1_rep	three_prime_UTR	20449129	20449193	.	+	.	Parent=Os04t0414000-00
Chr04	irgsp1_rep	three_prime_UTR	20449886	20449998	.	+	.	Parent=Os04t0414000-00
Chr04	irgsp1_rep	three_prime_UTR	20450070	20450133	.	+	.	Parent=Os04t0414000-00
Chr04	irgsp1_rep	three_prime_UTR	20450225	20450318	.	+	.	Parent=Os04t0414000-00
Chr04	irgsp1_rep	three_prime_UTR	20450400	20450508	.	+	.	Parent=Os04t0414000-00
Chr04	irgsp1_rep	three_prime_UTR	20450810	20451164	.	+	.	Parent=Os04t0414000-00
Chr04	irgsp1_rep	three_prime_UTR	20451461	20451616	.	+	.	Parent=Os04t0414000-00
Chr04	irgsp1_rep	mRNA	20457962	20462938	.	+	.	ID=Os04t0414100-01;Name=Os04t0414100-01;Locus_id=Os04g0414100;Note=Ovarian tumour%2C otubain domain containing protein.;Transcript_evidence=AK101471 (DDBJ%2C Best hit);ORF_evidence=Q01L96 (UniProt);InterPro=Ovarian tumour%2C otubain (IPR003323);NIAS_FLcDNA=J033040K14;Expression=AK101471;TENOR=Os04t0414100-01;KEGG=Os04t0414100-01
Chr04	irgsp1_rep	five_prime_UTR	20457962	20458614	.	+	.	Parent=Os04t0414100-01
Chr04	irgsp1_rep	CDS	20458615	20459313	.	+	0	Parent=Os04t0414100-01
Chr04	irgsp1_rep	CDS	20459582	20459743	.	+	0	Parent=Os04t0414100-01
Chr04	irgsp1_rep	CDS	20461090	20461167	.	+	0	Parent=Os04t0414100-01
Chr04	irgsp1_rep	CDS	20461643	20461721	.	+	0	Parent=Os04t0414100-01
Chr04	irgsp1_rep	CDS	20461816	20461961	.	+	2	Parent=Os04t0414100-01
Chr04	irgsp1_rep	CDS	20462071	20462139	.	+	0	Parent=Os04t0414100-01
Chr04	irgsp1_rep	CDS	20462269	20462437	.	+	0	Parent=Os04t0414100-01
Chr04	irgsp1_rep	CDS	20462533	20462783	.	+	2	Parent=Os04t0414100-01
Chr04	irgsp1_rep	three_prime_UTR	20462784	20462938	.	+	.	Parent=Os04t0414100-01
Chr04	irgsp1_rep	mRNA	20458629	20462940	.	+	.	ID=Os04t0414100-02;Name=Os04t0414100-02;Locus_id=Os04g0414100;Note=Similar to OSIGBa0137L20.4 protein.;Transcript_evidence=AK061508 (DDBJ%2C Best hit);ORF_evidence=Q01L96 (UniProt);InterPro=Ovarian tumour%2C otubain (IPR003323);NIAS_FLcDNA=006-309-F06;Expression=AK061508;TENOR=Os04t0414100-02;KEGG=Os04t0414100-02
Chr04	irgsp1_rep	five_prime_UTR	20458629	20458629	.	+	.	Parent=Os04t0414100-02
Chr04	irgsp1_rep	CDS	20458630	20459313	.	+	0	Parent=Os04t0414100-02
Chr04	irgsp1_rep	CDS	20459582	20459743	.	+	0	Parent=Os04t0414100-02
Chr04	irgsp1_rep	CDS	20461090	20461167	.	+	0	Parent=Os04t0414100-02
Chr04	irgsp1_rep	CDS	20461643	20461721	.	+	0	Parent=Os04t0414100-02
Chr04	irgsp1_rep	CDS	20461816	20461961	.	+	2	Parent=Os04t0414100-02
Chr04	irgsp1_rep	CDS	20462071	20462139	.	+	0	Parent=Os04t0414100-02
Chr04	irgsp1_rep	CDS	20462269	20462437	.	+	0	Parent=Os04t0414100-02
Chr04	irgsp1_rep	CDS	20462533	20462783	.	+	2	Parent=Os04t0414100-02
Chr04	irgsp1_rep	three_prime_UTR	20462784	20462940	.	+	.	Parent=Os04t0414100-02
Chr04	irgsp1_rep	mRNA	20470608	20470832	.	-	.	ID=Os04t0414250-00;Name=Os04t0414250-00;Locus_id=Os04g0414250;Note=Hypothetical protein.;Transcript_evidence=FP092470 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0414250-00
Chr04	irgsp1_rep	five_prime_UTR	20470831	20470832	.	-	.	Parent=Os04t0414250-00
Chr04	irgsp1_rep	CDS	20470608	20470830	.	-	0	Parent=Os04t0414250-00
Chr04	irgsp1_rep	mRNA	20484148	20485191	.	+	.	ID=Os04t0414300-00;Name=Os04t0414300-00;Locus_id=Os04g0414300;Note=Similar to H0622F05.1 protein.;Transcript_evidence=EU965676 (DDBJ);ORF_evidence=Q01L95 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);TENOR=Os04t0414300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	20484148	20484219	.	+	.	Parent=Os04t0414300-00
Chr04	irgsp1_rep	CDS	20484220	20484346	.	+	0	Parent=Os04t0414300-00
Chr04	irgsp1_rep	CDS	20484581	20484649	.	+	2	Parent=Os04t0414300-00
Chr04	irgsp1_rep	CDS	20484752	20484860	.	+	2	Parent=Os04t0414300-00
Chr04	irgsp1_rep	CDS	20485083	20485191	.	+	1	Parent=Os04t0414300-00
Chr04	irgsp1_rep	mRNA	20485333	20485689	.	+	.	ID=Os04t0414400-01;Name=Os04t0414400-01;Locus_id=Os04g0414400;CGSNL Gene Symbol=GRP4;CGSNL Gene Name=GLYCINE-RICH RNA-BINDING PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OsGRP4;Oryzabase Gene Name Synonym(s)=glycine-rich RNA-binding protein 4;Note=Non-protein coding transcript.;Transcript_evidence=AK058617 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-018-B04;Oryzabase=8940;TENOR=Os04t0414400-01
Chr04	irgsp1_rep	exon	20485333	20485689	.	+	.	Parent=Os04t0414400-01
Chr04	irgsp1_rep	mRNA	20485797	20487086	.	-	.	ID=Os04t0414500-01;Name=Os04t0414500-01;Locus_id=Os04g0414500;Oryzabase Gene Symbol Synonym(s)=OsFbox208%2C Os_F0775;Oryzabase Gene Name Synonym(s)=F-box protein 208;Note=Similar to H0622F05.2 protein.;Transcript_evidence=AK121479 (DDBJ%2C Best hit);ORF_evidence=Q01L94 (UniProt);NIAS_FLcDNA=J023149I19;Oryzabase=16996;Expression=AK121479;TENOR=Os04t0414500-01;KEGG=Os04t0414500-01
Chr04	irgsp1_rep	five_prime_UTR	20487045	20487086	.	-	.	Parent=Os04t0414500-01
Chr04	irgsp1_rep	CDS	20487037	20487044	.	-	0	Parent=Os04t0414500-01
Chr04	irgsp1_rep	CDS	20486348	20486682	.	-	1	Parent=Os04t0414500-01
Chr04	irgsp1_rep	CDS	20486109	20486122	.	-	2	Parent=Os04t0414500-01
Chr04	irgsp1_rep	three_prime_UTR	20485797	20486108	.	-	.	Parent=Os04t0414500-01
Chr04	irgsp1_rep	mRNA	20496054	20497009	.	+	.	ID=Os04t0414700-01;Name=Os04t0414700-01;Locus_id=Os04g0414700;Oryzabase Gene Symbol Synonym(s)=PSAO;Note=Photosystem I PsaO domain containing protein.;Transcript_evidence=AK058848 (DDBJ%2C Best hit);ORF_evidence=Q01L93 (UniProt);InterPro=Photosystem I PsaO (IPR017498);NIAS_FLcDNA=001-004-G12;Oryzabase=23074;Expression=AK058848;TENOR=Os04t0414700-01;KEGG=Os04t0414700-01
Chr04	irgsp1_rep	five_prime_UTR	20496054	20496122	.	+	.	Parent=Os04t0414700-01
Chr04	irgsp1_rep	CDS	20496123	20496189	.	+	0	Parent=Os04t0414700-01
Chr04	irgsp1_rep	CDS	20496277	20496361	.	+	2	Parent=Os04t0414700-01
Chr04	irgsp1_rep	CDS	20496470	20496649	.	+	1	Parent=Os04t0414700-01
Chr04	irgsp1_rep	CDS	20496766	20496862	.	+	1	Parent=Os04t0414700-01
Chr04	irgsp1_rep	three_prime_UTR	20496863	20497009	.	+	.	Parent=Os04t0414700-01
Chr04	irgsp1_rep	mRNA	20499421	20501058	.	+	.	ID=Os04t0414800-00;Name=Os04t0414800-00;Locus_id=Os04g0414800;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01L92 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os04t0414800-00;KEGG=Os04t0414800-00
Chr04	irgsp1_rep	CDS	20499421	20501058	.	+	0	Parent=Os04t0414800-00
Chr04	irgsp1_rep	mRNA	20499561	20501024	.	-	.	ID=Os04t0414850-00;Name=Os04t0414850-00;Locus_id=Os04g0414850;Note=Hypothetical protein.;Transcript_evidence=tplb0021n11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0414850-00
Chr04	irgsp1_rep	five_prime_UTR	20500182	20501024	.	-	.	Parent=Os04t0414850-00
Chr04	irgsp1_rep	five_prime_UTR	20499861	20500089	.	-	.	Parent=Os04t0414850-00
Chr04	irgsp1_rep	CDS	20499561	20499860	.	-	0	Parent=Os04t0414850-00
Chr04	irgsp1_rep	mRNA	20506819	20508788	.	-	.	ID=Os04t0414900-01;Name=Os04t0414900-01;Locus_id=Os04g0414900;Note=Non-protein coding transcript.;Transcript_evidence=AK109638 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-138-E05;TENOR=Os04t0414900-01
Chr04	irgsp1_rep	exon	20506819	20508788	.	-	.	Parent=Os04t0414900-01
Chr04	irgsp1_rep	mRNA	20508625	20509566	.	+	.	ID=Os04t0415000-01;Name=Os04t0415000-01;Locus_id=Os04g0415000;CGSNL Gene Symbol=ACL1;CGSNL Gene Name=ABAXIALLY CURLED LEAF 1;Oryzabase Gene Symbol Synonym(s)=OsACL1%2C ACL2%2C OsACL2;Oryzabase Gene Name Synonym(s)=abaxially curled leaf 1;Note=Similar to H0622F05.5 protein.;Transcript_evidence=AK108662 (DDBJ%2C Best hit);ORF_evidence=Q01LE9 (UniProt);NIAS_FLcDNA=002-148-F04;Oryzabase=22362;Expression=AK108662;TENOR=Os04t0415000-01;KEGG=Os04t0415000-01
Chr04	irgsp1_rep	five_prime_UTR	20508625	20508722	.	+	.	Parent=Os04t0415000-01
Chr04	irgsp1_rep	five_prime_UTR	20508835	20508859	.	+	.	Parent=Os04t0415000-01
Chr04	irgsp1_rep	CDS	20508860	20509210	.	+	0	Parent=Os04t0415000-01
Chr04	irgsp1_rep	three_prime_UTR	20509211	20509566	.	+	.	Parent=Os04t0415000-01
Chr04	irgsp1_rep	mRNA	20519136	20520509	.	+	.	ID=Os04t0415100-01;Name=Os04t0415100-01;Locus_id=Os04g0415100;Oryzabase Gene Symbol Synonym(s)=OsOFP10%2C OsOFP14%2C OFP10%2C OFP14;Oryzabase Gene Name Synonym(s)=OVATE family protein 10%2C ovate family protein 14%2C OVATE-domain containing protein 14;Note=Protein of unknown function DUF623%2C plant domain containing protein.;Transcript_evidence=AK107530 (DDBJ%2C Best hit);ORF_evidence=Q01LE8 (UniProt);InterPro=Domain of unknown function DUF623 (IPR006458);NIAS_FLcDNA=002-129-G09;Oryzabase=18306;Expression=AK107530;TENOR=Os04t0415100-01;KEGG=Os04t0415100-01
Chr04	irgsp1_rep	five_prime_UTR	20519136	20519136	.	+	.	Parent=Os04t0415100-01
Chr04	irgsp1_rep	CDS	20519137	20519387	.	+	0	Parent=Os04t0415100-01
Chr04	irgsp1_rep	CDS	20519470	20519767	.	+	1	Parent=Os04t0415100-01
Chr04	irgsp1_rep	CDS	20519856	20520290	.	+	0	Parent=Os04t0415100-01
Chr04	irgsp1_rep	three_prime_UTR	20520291	20520509	.	+	.	Parent=Os04t0415100-01
Chr04	irgsp1_rep	mRNA	20526110	20528248	.	+	.	ID=Os04t0415200-01;Name=Os04t0415200-01;Locus_id=Os04g0415200;Note=TB2/DP1 and HVA22 related protein family protein.;Transcript_evidence=AK108378 (DDBJ%2C Best hit);ORF_evidence=Q01LE7 (UniProt);InterPro=TB2/DP1/HVA22-related protein (IPR004345);NIAS_FLcDNA=002-142-E03;Expression=AK108378;TENOR=Os04t0415200-01;KEGG=Os04t0415200-01
Chr04	irgsp1_rep	five_prime_UTR	20526110	20526244	.	+	.	Parent=Os04t0415200-01
Chr04	irgsp1_rep	CDS	20526245	20526276	.	+	0	Parent=Os04t0415200-01
Chr04	irgsp1_rep	CDS	20526413	20526511	.	+	1	Parent=Os04t0415200-01
Chr04	irgsp1_rep	CDS	20526854	20526910	.	+	1	Parent=Os04t0415200-01
Chr04	irgsp1_rep	CDS	20526998	20527061	.	+	1	Parent=Os04t0415200-01
Chr04	irgsp1_rep	CDS	20527333	20527539	.	+	0	Parent=Os04t0415200-01
Chr04	irgsp1_rep	CDS	20527940	20528059	.	+	0	Parent=Os04t0415200-01
Chr04	irgsp1_rep	three_prime_UTR	20528060	20528248	.	+	.	Parent=Os04t0415200-01
Chr04	irgsp1_rep	mRNA	20528785	20530318	.	-	.	ID=Os04t0415401-01;Name=Os04t0415401-01;Locus_id=Os04g0415401;Note=Conserved hypothetical protein.;Transcript_evidence=AK243416 (DDBJ%2C Best hit);ORF_evidence=NP_001173928.1 (RefSeq);NIAS_FLcDNA=J100066H13;TENOR=Os04t0415401-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	20529875	20530318	.	-	.	Parent=Os04t0415401-01
Chr04	irgsp1_rep	CDS	20529176	20529874	.	-	0	Parent=Os04t0415401-01
Chr04	irgsp1_rep	three_prime_UTR	20528785	20529175	.	-	.	Parent=Os04t0415401-01
Chr04	irgsp1_rep	mRNA	20533890	20534645	.	+	.	ID=Os04t0415600-00;Name=Os04t0415600-00;Locus_id=Os04g0415600;CGSNL Gene Symbol=COPT4;CGSNL Gene Name=COPPER TRANSPORTER 4;Oryzabase Gene Symbol Synonym(s)=COPT4%2C OsCOPT4;Oryzabase Gene Name Synonym(s)=copper transporter 4;Note=Similar to H0622F05.9 protein.;Transcript_evidence=AK373873 (DDBJ);ORF_evidence=Q7XTF8 (UniProt);GO=Biological Process: copper ion transmembrane transport (GO:0035434),Cellular Component: integral to membrane (GO:0016021),Molecular Function: copper ion transmembrane transporter activity (GO:0005375);InterPro=Ctr copper transporter (IPR007274);Oryzabase=12126;TENOR=Os04t0415600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	20533890	20534090	.	+	.	Parent=Os04t0415600-00
Chr04	irgsp1_rep	CDS	20534091	20534645	.	+	0	Parent=Os04t0415600-00
Chr04	irgsp1_rep	mRNA	20543471	20543934	.	+	.	ID=Os04t0415800-00;Name=Os04t0415800-00;Locus_id=Os04g0415800;Oryzabase Gene Symbol Synonym(s)=OsLTPd6%2C OsLtpV.2;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein d6%2C lipid transfer protein d6%2C type D non-specific lipid transfer protein 6;Note=Similar to OSIGBa0092M08.2 protein.;Transcript_evidence=AK370028 (DDBJ);ORF_evidence=Q01I50 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);Oryzabase=13547;TENOR=Os04t0415800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	20543471	20543544	.	+	.	Parent=Os04t0415800-00
Chr04	irgsp1_rep	CDS	20543545	20543934	.	+	0	Parent=Os04t0415800-00
Chr04	irgsp1_rep	mRNA	20547192	20548369	.	+	.	ID=Os04t0415900-00;Name=Os04t0415900-00;Locus_id=Os04g0415900;Oryzabase Gene Symbol Synonym(s)=OsLTPd7%2C OsLtpV.3;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein d7%2C lipid transfer protein d7%2C type D non-specific lipid transfer protein 7;Note=Similar to OSIGBa0092M08.3 protein.;Transcript_evidence=CT836506 (DDBJ%2C Best hit);ORF_evidence=Q01I49 (UniProt);Oryzabase=13548;TENOR=Os04t0415900-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	20547192	20547225	.	+	.	Parent=Os04t0415900-00
Chr04	irgsp1_rep	CDS	20547226	20547587	.	+	0	Parent=Os04t0415900-00
Chr04	irgsp1_rep	CDS	20548007	20548061	.	+	1	Parent=Os04t0415900-00
Chr04	irgsp1_rep	three_prime_UTR	20548062	20548369	.	+	.	Parent=Os04t0415900-00
Chr04	irgsp1_rep	mRNA	20548896	20550959	.	+	.	ID=Os04t0416000-01;Name=Os04t0416000-01;Locus_id=Os04g0416000;Note=Protein of unknown function DUF1279 domain containing protein.;Transcript_evidence=AK241337 (DDBJ%2C Best hit);ORF_evidence=Q01I48 (UniProt);InterPro=Domain of unknown function DUF1279 (IPR009688);NIAS_FLcDNA=J065144L23;TENOR=Os04t0416000-01;KEGG=Os04t0416000-01
Chr04	irgsp1_rep	five_prime_UTR	20548896	20548980	.	+	.	Parent=Os04t0416000-01
Chr04	irgsp1_rep	CDS	20548981	20549193	.	+	0	Parent=Os04t0416000-01
Chr04	irgsp1_rep	CDS	20549272	20549463	.	+	0	Parent=Os04t0416000-01
Chr04	irgsp1_rep	CDS	20549555	20549713	.	+	0	Parent=Os04t0416000-01
Chr04	irgsp1_rep	three_prime_UTR	20549714	20550959	.	+	.	Parent=Os04t0416000-01
Chr04	irgsp1_rep	mRNA	20549988	20555142	.	-	.	ID=Os04t0416100-01;Name=Os04t0416100-01;Locus_id=Os04g0416100;Oryzabase Gene Symbol Synonym(s)=Orysa%3BE2F3%2C OsE2F3%2C DLN111%2C OsDLN111;Oryzabase Gene Name Synonym(s)=E2F transcription factor 3%2C DLN repressor 111%2C DLN motif protein 111;Note=Similar to Transcription factor E2F1 (E2F-1) (Fragment).;Transcript_evidence=AK067581 (DDBJ%2C Best hit);ORF_evidence=Q01I47 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: transcription factor complex (GO:0005667),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Transcription factor E2F/dimerisation partner (TDP) (IPR003316),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),E2F Family (IPR015633);NIAS_FLcDNA=J013113N12;Oryzabase=13312;Expression=AK067581;TENOR=Os04t0416100-01;KEGG=Os04t0416100-01
Chr04	irgsp1_rep	five_prime_UTR	20554971	20555142	.	-	.	Parent=Os04t0416100-01
Chr04	irgsp1_rep	CDS	20554782	20554970	.	-	0	Parent=Os04t0416100-01
Chr04	irgsp1_rep	CDS	20553485	20553675	.	-	0	Parent=Os04t0416100-01
Chr04	irgsp1_rep	CDS	20553305	20553357	.	-	1	Parent=Os04t0416100-01
Chr04	irgsp1_rep	CDS	20553057	20553142	.	-	2	Parent=Os04t0416100-01
Chr04	irgsp1_rep	CDS	20552874	20552962	.	-	0	Parent=Os04t0416100-01
Chr04	irgsp1_rep	CDS	20552750	20552801	.	-	1	Parent=Os04t0416100-01
Chr04	irgsp1_rep	CDS	20552575	20552627	.	-	0	Parent=Os04t0416100-01
Chr04	irgsp1_rep	CDS	20552448	20552498	.	-	1	Parent=Os04t0416100-01
Chr04	irgsp1_rep	CDS	20551978	20552026	.	-	1	Parent=Os04t0416100-01
Chr04	irgsp1_rep	CDS	20551790	20551855	.	-	0	Parent=Os04t0416100-01
Chr04	irgsp1_rep	CDS	20551506	20551586	.	-	0	Parent=Os04t0416100-01
Chr04	irgsp1_rep	three_prime_UTR	20551224	20551505	.	-	.	Parent=Os04t0416100-01
Chr04	irgsp1_rep	three_prime_UTR	20549988	20550747	.	-	.	Parent=Os04t0416100-01
Chr04	irgsp1_rep	mRNA	20559959	20564905	.	+	.	ID=Os04t0416400-01;Name=Os04t0416400-01;Locus_id=Os04g0416400;CGSNL Gene Symbol=2CYSPRXB;CGSNL Gene Name=2-CYS PEROXIREDOXIN B;Oryzabase Gene Symbol Synonym(s)=Os2-Cys PrxB%2C 2-Cys PrxB;Oryzabase Gene Name Synonym(s)=peroxiredoxin%2C 2-Cys peroxiredoxin B;Note=Similar to OSIGBa0092M08.6 protein.;Transcript_evidence=AK240891 (DDBJ%2C Best hit);ORF_evidence=Q01I46 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: antioxidant activity (GO:0016209),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant (IPR000866),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=J065030G11;Oryzabase=21409;TENOR=Os04t0416400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	20559959	20560183	.	+	0	Parent=Os04t0416400-01
Chr04	irgsp1_rep	CDS	20560278	20560352	.	+	0	Parent=Os04t0416400-01
Chr04	irgsp1_rep	CDS	20560833	20560985	.	+	0	Parent=Os04t0416400-01
Chr04	irgsp1_rep	three_prime_UTR	20560986	20561095	.	+	.	Parent=Os04t0416400-01
Chr04	irgsp1_rep	three_prime_UTR	20561843	20563186	.	+	.	Parent=Os04t0416400-01
Chr04	irgsp1_rep	three_prime_UTR	20563400	20563951	.	+	.	Parent=Os04t0416400-01
Chr04	irgsp1_rep	three_prime_UTR	20564084	20564214	.	+	.	Parent=Os04t0416400-01
Chr04	irgsp1_rep	three_prime_UTR	20564412	20564905	.	+	.	Parent=Os04t0416400-01
Chr04	irgsp1_rep	mRNA	20567848	20570809	.	-	.	ID=Os04t0416450-00;Name=Os04t0416450-00;Locus_id=Os04g0416450;Note=Hypothetical protein.;Transcript_evidence=tplb0057f18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0416450-00
Chr04	irgsp1_rep	five_prime_UTR	20569929	20570809	.	-	.	Parent=Os04t0416450-00
Chr04	irgsp1_rep	five_prime_UTR	20569038	20569396	.	-	.	Parent=Os04t0416450-00
Chr04	irgsp1_rep	CDS	20568531	20569037	.	-	0	Parent=Os04t0416450-00
Chr04	irgsp1_rep	CDS	20568158	20568430	.	-	0	Parent=Os04t0416450-00
Chr04	irgsp1_rep	three_prime_UTR	20567848	20568157	.	-	.	Parent=Os04t0416450-00
Chr04	irgsp1_rep	mRNA	20568655	20571227	.	+	.	ID=Os04t0416500-01;Name=Os04t0416500-01;Locus_id=Os04g0416500;Note=Immunoglobulin/major histocompatibility complex%2C conserved site domain containing protein.;Transcript_evidence=AK109870 (DDBJ%2C Best hit);ORF_evidence=Q01I45 (UniProt);NIAS_FLcDNA=002-149-A10;Expression=AK109870;TENOR=Os04t0416500-01;KEGG=Os04t0416500-01
Chr04	irgsp1_rep	five_prime_UTR	20568655	20568656	.	+	.	Parent=Os04t0416500-01
Chr04	irgsp1_rep	CDS	20568657	20569126	.	+	0	Parent=Os04t0416500-01
Chr04	irgsp1_rep	CDS	20569570	20569813	.	+	1	Parent=Os04t0416500-01
Chr04	irgsp1_rep	CDS	20569897	20571009	.	+	0	Parent=Os04t0416500-01
Chr04	irgsp1_rep	three_prime_UTR	20571010	20571227	.	+	.	Parent=Os04t0416500-01
Chr04	irgsp1_rep	mRNA	20579386	20580531	.	-	.	ID=Os04t0416700-01;Name=Os04t0416700-01;Locus_id=Os04g0416700;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK068271 (DDBJ%2C Best hit);ORF_evidence=Q01I44 (UniProt);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=J013139L19;Expression=AK068271;TENOR=Os04t0416700-01;KEGG=Os04t0416700-01
Chr04	irgsp1_rep	five_prime_UTR	20580405	20580531	.	-	.	Parent=Os04t0416700-01
Chr04	irgsp1_rep	CDS	20580195	20580404	.	-	0	Parent=Os04t0416700-01
Chr04	irgsp1_rep	CDS	20579655	20580107	.	-	0	Parent=Os04t0416700-01
Chr04	irgsp1_rep	three_prime_UTR	20579468	20579654	.	-	.	Parent=Os04t0416700-01
Chr04	irgsp1_rep	three_prime_UTR	20579386	20579460	.	-	.	Parent=Os04t0416700-01
Chr04	irgsp1_rep	mRNA	20590633	20591148	.	+	.	ID=Os04t0416900-01;Name=Os04t0416900-01;Locus_id=Os04g0416900;CGSNL Gene Symbol=DGD1B;CGSNL Gene Name=DIGALACTOSYLDIACYLGLYCEROL SYNTHASE 1 BETA;Oryzabase Gene Symbol Synonym(s)=OsDGD1beta%2C DGD1beta%2C OsDGD1B;Oryzabase Gene Name Synonym(s)=Digalactosyldiacylglycerol synthase 1 beta%2C DGDG synthase 1 beta;Note=Similar to OSIGBa0092M08.9 protein.;Transcript_evidence=AK242513 (DDBJ%2C Best hit);ORF_evidence=Q01I43 (UniProt);NIAS_FLcDNA=J080312A22;Oryzabase=23294;TENOR=Os04t0416900-01;KEGG=Os04t0416900-01 (EC:2.4.1.241)
Chr04	irgsp1_rep	five_prime_UTR	20590633	20590634	.	+	.	Parent=Os04t0416900-01
Chr04	irgsp1_rep	CDS	20590635	20590868	.	+	0	Parent=Os04t0416900-01
Chr04	irgsp1_rep	three_prime_UTR	20590869	20591148	.	+	.	Parent=Os04t0416900-01
Chr04	irgsp1_rep	mRNA	20592809	20596141	.	-	.	ID=Os04t0417000-01;Name=Os04t0417000-01;Locus_id=Os04g0417000;CGSNL Gene Symbol=ALMT1;CGSNL Gene Name=ALUMINUM-ACTIVATED MALATE TRANSPORTER 1;Oryzabase Gene Symbol Synonym(s)=OsALMT1;Oryzabase Gene Name Synonym(s)=Aluminum-activated malate transporter 1;Note=Similar to Aluminum-activated malate transporter.;Transcript_evidence=AK063428 (DDBJ%2C Best hit);ORF_evidence=Q01I42 (UniProt);GO=Biological Process: response to aluminum ion (GO:0010044);InterPro=Malate transporter%2C aliminium toerance (IPR020966);NIAS_FLcDNA=001-115-D04;Oryzabase=22150;Expression=AK063428;TENOR=Os04t0417000-01;KEGG=Os04t0417000-01
Chr04	irgsp1_rep	five_prime_UTR	20595982	20596141	.	-	.	Parent=Os04t0417000-01
Chr04	irgsp1_rep	CDS	20595645	20595981	.	-	0	Parent=Os04t0417000-01
Chr04	irgsp1_rep	CDS	20594753	20594893	.	-	2	Parent=Os04t0417000-01
Chr04	irgsp1_rep	CDS	20594112	20594384	.	-	2	Parent=Os04t0417000-01
Chr04	irgsp1_rep	CDS	20593730	20593842	.	-	2	Parent=Os04t0417000-01
Chr04	irgsp1_rep	CDS	20593462	20593611	.	-	0	Parent=Os04t0417000-01
Chr04	irgsp1_rep	CDS	20593015	20593368	.	-	0	Parent=Os04t0417000-01
Chr04	irgsp1_rep	three_prime_UTR	20592809	20593014	.	-	.	Parent=Os04t0417000-01
Chr04	irgsp1_rep	mRNA	20624277	20626071	.	+	.	ID=Os04t0417600-00;Name=Os04t0417600-00;Locus_id=Os04g0417600;Oryzabase Gene Symbol Synonym(s)=OsVQ15;Oryzabase Gene Name Synonym(s)=VQ motif-containing protein 15;Note=Similar to OSIGBa0092M08.12 protein.;Transcript_evidence=EU953424 (DDBJ);ORF_evidence=Q01I40 (UniProt);InterPro=VQ (IPR008889);Oryzabase=13631;TENOR=Os04t0417600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	20624277	20624810	.	+	0	Parent=Os04t0417600-00
Chr04	irgsp1_rep	CDS	20624872	20625588	.	+	0	Parent=Os04t0417600-00
Chr04	irgsp1_rep	three_prime_UTR	20625589	20625743	.	+	.	Parent=Os04t0417600-00
Chr04	irgsp1_rep	three_prime_UTR	20625845	20626071	.	+	.	Parent=Os04t0417600-00
Chr04	irgsp1_rep	mRNA	20635771	20636444	.	+	.	ID=Os04t0417750-00;Name=Os04t0417750-00;Locus_id=Os04g0417750;Note=Non-protein coding transcript.;Transcript_evidence=CT835081 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os04t0417750-00
Chr04	irgsp1_rep	exon	20635771	20636444	.	+	.	Parent=Os04t0417750-00
Chr04	irgsp1_rep	mRNA	20640443	20645375	.	-	.	ID=Os04t0417800-01;Name=Os04t0417800-01;Locus_id=Os04g0417800;Oryzabase Gene Symbol Synonym(s)=OsWD40-100;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK067483 (DDBJ%2C Best hit);ORF_evidence=Q01I39 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J013108P06;Oryzabase=10781;Expression=AK067483;TENOR=Os04t0417800-01;KEGG=Os04t0417800-01
Chr04	irgsp1_rep	five_prime_UTR	20645136	20645375	.	-	.	Parent=Os04t0417800-01
Chr04	irgsp1_rep	five_prime_UTR	20643638	20643734	.	-	.	Parent=Os04t0417800-01
Chr04	irgsp1_rep	CDS	20642573	20643637	.	-	0	Parent=Os04t0417800-01
Chr04	irgsp1_rep	CDS	20642299	20642389	.	-	0	Parent=Os04t0417800-01
Chr04	irgsp1_rep	CDS	20641878	20642035	.	-	2	Parent=Os04t0417800-01
Chr04	irgsp1_rep	CDS	20641745	20641796	.	-	0	Parent=Os04t0417800-01
Chr04	irgsp1_rep	CDS	20641557	20641633	.	-	2	Parent=Os04t0417800-01
Chr04	irgsp1_rep	CDS	20641345	20641438	.	-	0	Parent=Os04t0417800-01
Chr04	irgsp1_rep	CDS	20640711	20641216	.	-	2	Parent=Os04t0417800-01
Chr04	irgsp1_rep	three_prime_UTR	20640443	20640710	.	-	.	Parent=Os04t0417800-01
Chr04	irgsp1_rep	mRNA	20653716	20657117	.	+	.	ID=Os04t0418000-01;Name=Os04t0418000-01;Locus_id=Os04g0418000;CGSNL Gene Symbol=SDH5;CGSNL Gene Name=SUCCINATE DEHYDROGENASE SUBUNIT 5;Oryzabase Gene Name Synonym(s)=SUCCINATE:UBIQUINONE OXIDOREDUCTASE;Note=Conserved hypothetical protein.;Transcript_evidence=AK106155 (DDBJ%2C Best hit),AK061030 (DDBJ%2C Best hit),AK099124 (DDBJ%2C Best hit),AK119714 (DDBJ%2C Best hit);ORF_evidence=Q7X6C3 (UniProt);NIAS_FLcDNA=001-208-A04,006-204-H01,J023039I07,002-157-F05;Oryzabase=8751;TENOR=Os04t0418000-01
Chr04	irgsp1_rep	five_prime_UTR	20653716	20653778	.	+	.	Parent=Os04t0418000-01
Chr04	irgsp1_rep	CDS	20653779	20653926	.	+	0	Parent=Os04t0418000-01
Chr04	irgsp1_rep	CDS	20654763	20655067	.	+	2	Parent=Os04t0418000-01
Chr04	irgsp1_rep	CDS	20655188	20655373	.	+	0	Parent=Os04t0418000-01
Chr04	irgsp1_rep	CDS	20656704	20656760	.	+	0	Parent=Os04t0418000-01
Chr04	irgsp1_rep	three_prime_UTR	20656761	20657117	.	+	.	Parent=Os04t0418000-01
Chr04	irgsp1_rep	mRNA	20661060	20661752	.	-	.	ID=Os04t0418100-00;Name=Os04t0418100-00;Locus_id=Os04g0418100;Note=Hypothetical conserved gene.;Transcript_evidence=CT835067 (DDBJ%2C Best hit);ORF_evidence=B9FF49 (UniProt);TENOR=Os04t0418100-00;KEGG=Os04t0418100-00
Chr04	irgsp1_rep	five_prime_UTR	20661591	20661752	.	-	.	Parent=Os04t0418100-00
Chr04	irgsp1_rep	CDS	20661309	20661590	.	-	0	Parent=Os04t0418100-00
Chr04	irgsp1_rep	three_prime_UTR	20661295	20661308	.	-	.	Parent=Os04t0418100-00
Chr04	irgsp1_rep	three_prime_UTR	20661060	20661288	.	-	.	Parent=Os04t0418100-00
Chr04	irgsp1_rep	mRNA	20688214	20691055	.	-	.	ID=Os04t0418300-00;Name=Os04t0418300-00;Locus_id=Os04g0418300;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XQY6 (UniProt);TENOR=Os04t0418300-00
Chr04	irgsp1_rep	CDS	20690830	20691055	.	-	0	Parent=Os04t0418300-00
Chr04	irgsp1_rep	CDS	20688214	20688503	.	-	2	Parent=Os04t0418300-00
Chr04	irgsp1_rep	mRNA	20690867	20692518	.	+	.	ID=Os04t0418500-01;Name=Os04t0418500-01;Locus_id=Os04g0418500;Oryzabase Gene Symbol Synonym(s)=OsPUB46;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 46%2C U-box protein 46;Note=Similar to photoperiod responsive protein.;Transcript_evidence=AK121255 (DDBJ%2C Best hit);ORF_evidence=NP_001150615.1 (RefSeq);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488);InterPro=U box domain (IPR003613),Armadillo-like helical (IPR011989),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023102B22;Oryzabase=17837;TENOR=Os04t0418500-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	20690867	20690921	.	+	.	Parent=Os04t0418500-01
Chr04	irgsp1_rep	CDS	20690922	20692277	.	+	0	Parent=Os04t0418500-01
Chr04	irgsp1_rep	three_prime_UTR	20692278	20692518	.	+	.	Parent=Os04t0418500-01
Chr04	irgsp1_rep	mRNA	20698942	20699295	.	+	.	ID=Os04t0418600-00;Name=Os04t0418600-00;Locus_id=Os04g0418600;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XQY4 (UniProt);TENOR=Os04t0418600-00
Chr04	irgsp1_rep	CDS	20698942	20699295	.	+	0	Parent=Os04t0418600-00
Chr04	irgsp1_rep	mRNA	20708033	20709822	.	+	.	ID=Os04t0418800-01;Name=Os04t0418800-01;Locus_id=Os04g0418800;Oryzabase Gene Name Synonym(s)=hydroxyproline-rich glycoprotein;Note=Similar to Hydroxyproline-rich glycoprotein.;Transcript_evidence=AK064039 (DDBJ%2C Best hit);ORF_evidence=Q7XQY2 (UniProt);NIAS_FLcDNA=001-125-C11;Oryzabase=17748;Expression=AK064039;TENOR=Os04t0418800-01;KEGG=Os04t0418800-01
Chr04	irgsp1_rep	five_prime_UTR	20708033	20708112	.	+	.	Parent=Os04t0418800-01
Chr04	irgsp1_rep	CDS	20708113	20709043	.	+	0	Parent=Os04t0418800-01
Chr04	irgsp1_rep	CDS	20709179	20709195	.	+	2	Parent=Os04t0418800-01
Chr04	irgsp1_rep	three_prime_UTR	20709196	20709232	.	+	.	Parent=Os04t0418800-01
Chr04	irgsp1_rep	three_prime_UTR	20709491	20709822	.	+	.	Parent=Os04t0418800-01
Chr04	irgsp1_rep	mRNA	20708035	20709830	.	+	.	ID=Os04t0418800-02;Name=Os04t0418800-02;Locus_id=Os04g0418800;Oryzabase Gene Name Synonym(s)=hydroxyproline-rich glycoprotein;Note=Hypothetical protein.;Transcript_evidence=AK102919 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J033114B14;Oryzabase=17748;TENOR=Os04t0418800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	20708035	20708106	.	+	.	Parent=Os04t0418800-02
Chr04	irgsp1_rep	CDS	20708107	20709195	.	+	0	Parent=Os04t0418800-02
Chr04	irgsp1_rep	three_prime_UTR	20709196	20709830	.	+	.	Parent=Os04t0418800-02
Chr04	irgsp1_rep	mRNA	20711241	20712557	.	+	.	ID=Os04t0418900-01;Name=Os04t0418900-01;Locus_id=Os04g0418900;Note=Non-protein coding transcript.;Transcript_evidence=AK073909 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J033077P07;TENOR=Os04t0418900-01
Chr04	irgsp1_rep	exon	20711241	20712557	.	+	.	Parent=Os04t0418900-01
Chr04	irgsp1_rep	mRNA	20716594	20717566	.	+	.	ID=Os04t0419100-01;Name=Os04t0419100-01;Locus_id=Os04g0419100;Note=Conserved hypothetical protein.;Transcript_evidence=AK107777 (DDBJ%2C Best hit);ORF_evidence=B8ATQ0 (UniProt);NIAS_FLcDNA=002-133-C02;Expression=AK107777;TENOR=Os04t0419100-01;KEGG=Os04t0419100-01
Chr04	irgsp1_rep	five_prime_UTR	20716594	20716633	.	+	.	Parent=Os04t0419100-01
Chr04	irgsp1_rep	CDS	20716634	20717311	.	+	0	Parent=Os04t0419100-01
Chr04	irgsp1_rep	three_prime_UTR	20717312	20717566	.	+	.	Parent=Os04t0419100-01
Chr04	irgsp1_rep	mRNA	20724667	20726477	.	+	.	ID=Os04t0419200-01;Name=Os04t0419200-01;Locus_id=Os04g0419200;Note=Hypothetical conserved gene.;Transcript_evidence=AK064626 (DDBJ%2C Best hit);ORF_evidence=B9FF52 (UniProt);NIAS_FLcDNA=002-113-F01;Expression=AK064626;TENOR=Os04t0419200-01;KEGG=Os04t0419200-01
Chr04	irgsp1_rep	five_prime_UTR	20724667	20724853	.	+	.	Parent=Os04t0419200-01
Chr04	irgsp1_rep	CDS	20724854	20724959	.	+	0	Parent=Os04t0419200-01
Chr04	irgsp1_rep	CDS	20725057	20725099	.	+	2	Parent=Os04t0419200-01
Chr04	irgsp1_rep	CDS	20725251	20725305	.	+	1	Parent=Os04t0419200-01
Chr04	irgsp1_rep	three_prime_UTR	20725306	20726477	.	+	.	Parent=Os04t0419200-01
Chr04	irgsp1_rep	mRNA	20728134	20728840	.	-	.	ID=Os04t0419400-00;Name=Os04t0419400-00;Locus_id=Os04g0419400;Note=Conserved hypothetical protein.;Transcript_evidence=AK107801 (DDBJ%2C Secondary hit);ORF_evidence=NP_001056956.1 (RefSeq);TENOR=Os04t0419400-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	20728396	20728840	.	-	.	Parent=Os04t0419400-00
Chr04	irgsp1_rep	CDS	20728255	20728395	.	-	0	Parent=Os04t0419400-00
Chr04	irgsp1_rep	three_prime_UTR	20728134	20728254	.	-	.	Parent=Os04t0419400-00
Chr04	irgsp1_rep	mRNA	20734444	20735342	.	+	.	ID=Os04t0419550-01;Name=Os04t0419550-01;Locus_id=Os04g0419550;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=AK243335 (DDBJ%2C Best hit);ORF_evidence=Q7XQX6 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J100059A06;TENOR=Os04t0419550-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	20734444	20734450	.	+	.	Parent=Os04t0419550-01
Chr04	irgsp1_rep	CDS	20734451	20735152	.	+	0	Parent=Os04t0419550-01
Chr04	irgsp1_rep	three_prime_UTR	20735153	20735342	.	+	.	Parent=Os04t0419550-01
Chr04	irgsp1_rep	mRNA	20738833	20740297	.	+	.	ID=Os04t0419600-01;Name=Os04t0419600-01;Locus_id=Os04g0419600;Note=Histone H3.;Transcript_evidence=AK288497 (DDBJ%2C Best hit);ORF_evidence=XP_003082036.1 (RefSeq);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H3 (IPR000164),Histone core (IPR007125),Histone-fold (IPR009072);NIAS_FLcDNA=J090040O17;TENOR=Os04t0419600-01;KEGG=Os04t0419600-01
Chr04	irgsp1_rep	five_prime_UTR	20738833	20739346	.	+	.	Parent=Os04t0419600-01
Chr04	irgsp1_rep	CDS	20739347	20740171	.	+	0	Parent=Os04t0419600-01
Chr04	irgsp1_rep	three_prime_UTR	20740172	20740297	.	+	.	Parent=Os04t0419600-01
Chr04	irgsp1_rep	mRNA	20742118	20744600	.	+	.	ID=Os04t0419700-00;Name=Os04t0419700-00;Locus_id=Os04g0419700;Note=Similar to H0525E10.7 protein.;Transcript_evidence=AK357509 (DDBJ);ORF_evidence=Q01K01 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),S-receptor-like serine/threonine-protein kinase (IPR024171);TENOR=Os04t0419700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	20742118	20742121	.	+	.	Parent=Os04t0419700-00
Chr04	irgsp1_rep	CDS	20742122	20744545	.	+	0	Parent=Os04t0419700-00
Chr04	irgsp1_rep	three_prime_UTR	20744546	20744600	.	+	.	Parent=Os04t0419700-00
Chr04	irgsp1_rep	mRNA	20742181	20744523	.	-	.	ID=Os04t0419750-00;Name=Os04t0419750-00;Locus_id=Os04g0419750;Note=Hypothetical protein.;Transcript_evidence=tplb0036o12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0419750-00
Chr04	irgsp1_rep	five_prime_UTR	20743118	20744523	.	-	.	Parent=Os04t0419750-00
Chr04	irgsp1_rep	five_prime_UTR	20742571	20742931	.	-	.	Parent=Os04t0419750-00
Chr04	irgsp1_rep	CDS	20742313	20742570	.	-	0	Parent=Os04t0419750-00
Chr04	irgsp1_rep	three_prime_UTR	20742181	20742312	.	-	.	Parent=Os04t0419750-00
Chr04	irgsp1_rep	mRNA	20757758	20765190	.	-	.	ID=Os04t0419800-01;Name=Os04t0419800-01;Locus_id=Os04g0419800;Note=Hypothetical protein.;Transcript_evidence=AK110859 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-172-D04;Expression=AK110859;TENOR=Os04t0419800-01;KEGG=Os04t0419800-01
Chr04	irgsp1_rep	five_prime_UTR	20764884	20765190	.	-	.	Parent=Os04t0419800-01
Chr04	irgsp1_rep	five_prime_UTR	20758837	20758992	.	-	.	Parent=Os04t0419800-01
Chr04	irgsp1_rep	five_prime_UTR	20758489	20758762	.	-	.	Parent=Os04t0419800-01
Chr04	irgsp1_rep	CDS	20758219	20758488	.	-	0	Parent=Os04t0419800-01
Chr04	irgsp1_rep	three_prime_UTR	20757758	20758218	.	-	.	Parent=Os04t0419800-01
Chr04	irgsp1_rep	mRNA	20764802	20765156	.	-	.	ID=Os04t0419800-02;Name=Os04t0419800-02;Locus_id=Os04g0419800;Note=Hypothetical conserved gene.;Transcript_evidence=AK121609 (DDBJ%2C Best hit);ORF_evidence=B9FF57 (UniProt);NIAS_FLcDNA=J033042L18;TENOR=Os04t0419800-02;KEGG=Os04t0419800-02
Chr04	irgsp1_rep	five_prime_UTR	20765039	20765156	.	-	.	Parent=Os04t0419800-02
Chr04	irgsp1_rep	CDS	20764850	20765038	.	-	0	Parent=Os04t0419800-02
Chr04	irgsp1_rep	three_prime_UTR	20764802	20764849	.	-	.	Parent=Os04t0419800-02
Chr04	irgsp1_rep	mRNA	20758076	20760630	.	+	.	ID=Os04t0419900-01;Name=Os04t0419900-01;Locus_id=Os04g0419900;Oryzabase Gene Symbol Synonym(s)=YK18;Note=Similar to H0525E10.7 protein.;Transcript_evidence=AK110836 (DDBJ%2C Best hit);ORF_evidence=Q01K01 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),S-receptor-like serine/threonine-protein kinase (IPR024171);NIAS_FLcDNA=002-172-B01;Oryzabase=15188;TENOR=Os04t0419900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	20758076	20758084	.	+	.	Parent=Os04t0419900-01
Chr04	irgsp1_rep	CDS	20758085	20760430	.	+	0	Parent=Os04t0419900-01
Chr04	irgsp1_rep	three_prime_UTR	20760431	20760630	.	+	.	Parent=Os04t0419900-01
Chr04	irgsp1_rep	mRNA	20768925	20771468	.	+	.	ID=Os04t0420033-00;Name=Os04t0420033-00;Locus_id=Os04g0420033;Note=Similar to H0525E10.1 protein.;Transcript_evidence=BT084608 (DDBJ);ORF_evidence=Q01K07 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os04t0420033-00
Chr04	irgsp1_rep	CDS	20768925	20771417	.	+	0	Parent=Os04t0420033-00
Chr04	irgsp1_rep	three_prime_UTR	20771418	20771468	.	+	.	Parent=Os04t0420033-00
Chr04	irgsp1_rep	mRNA	20769021	20771393	.	-	.	ID=Os04t0420166-00;Name=Os04t0420166-00;Locus_id=Os04g0420166;Note=Hypothetical protein.;Transcript_evidence=tplb0036o12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0420166-00
Chr04	irgsp1_rep	five_prime_UTR	20770634	20771393	.	-	.	Parent=Os04t0420166-00
Chr04	irgsp1_rep	CDS	20770274	20770633	.	-	0	Parent=Os04t0420166-00
Chr04	irgsp1_rep	three_prime_UTR	20769875	20770273	.	-	.	Parent=Os04t0420166-00
Chr04	irgsp1_rep	three_prime_UTR	20769021	20769709	.	-	.	Parent=Os04t0420166-00
Chr04	irgsp1_rep	mRNA	20779171	20781691	.	+	.	ID=Os04t0420300-00;Name=Os04t0420300-00;Locus_id=Os04g0420300;CGSNL Gene Symbol=RLCK150;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 150;Oryzabase Gene Symbol Synonym(s)=OsRLCK150;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 150;Note=Similar to H0525E10.1 protein.;Transcript_evidence=AK371960 (DDBJ);ORF_evidence=Q01K07 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18853;TENOR=Os04t0420300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	20779171	20779210	.	+	.	Parent=Os04t0420300-00
Chr04	irgsp1_rep	CDS	20779211	20781637	.	+	0	Parent=Os04t0420300-00
Chr04	irgsp1_rep	three_prime_UTR	20781638	20781691	.	+	.	Parent=Os04t0420300-00
Chr04	irgsp1_rep	mRNA	20789460	20793872	.	-	.	ID=Os04t0420500-01;Name=Os04t0420500-01;Locus_id=Os04g0420500;Note=Hypothetical protein.;Transcript_evidence=AK073522 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033046G09;TENOR=Os04t0420500-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	20793725	20793872	.	-	.	Parent=Os04t0420500-01
Chr04	irgsp1_rep	five_prime_UTR	20793548	20793653	.	-	.	Parent=Os04t0420500-01
Chr04	irgsp1_rep	five_prime_UTR	20793225	20793443	.	-	.	Parent=Os04t0420500-01
Chr04	irgsp1_rep	five_prime_UTR	20792920	20793109	.	-	.	Parent=Os04t0420500-01
Chr04	irgsp1_rep	five_prime_UTR	20792701	20792829	.	-	.	Parent=Os04t0420500-01
Chr04	irgsp1_rep	five_prime_UTR	20791369	20791575	.	-	.	Parent=Os04t0420500-01
Chr04	irgsp1_rep	five_prime_UTR	20790399	20791091	.	-	.	Parent=Os04t0420500-01
Chr04	irgsp1_rep	CDS	20790060	20790398	.	-	0	Parent=Os04t0420500-01
Chr04	irgsp1_rep	three_prime_UTR	20789460	20790059	.	-	.	Parent=Os04t0420500-01
Chr04	irgsp1_rep	mRNA	20790084	20792816	.	+	.	ID=Os04t0420600-00;Name=Os04t0420600-00;Locus_id=Os04g0420600;Note=Similar to H0525E10.2 protein.;Transcript_evidence=tplb0059a02 (Wheat FLcDNA);ORF_evidence=Q01K06 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os04t0420600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	20790084	20790084	.	+	.	Parent=Os04t0420600-00
Chr04	irgsp1_rep	CDS	20790085	20792477	.	+	0	Parent=Os04t0420600-00
Chr04	irgsp1_rep	CDS	20792690	20792693	.	+	1	Parent=Os04t0420600-00
Chr04	irgsp1_rep	three_prime_UTR	20792694	20792816	.	+	.	Parent=Os04t0420600-00
Chr04	irgsp1_rep	mRNA	20811155	20812787	.	-	.	ID=Os04t0420700-00;Name=Os04t0420700-00;Locus_id=Os04g0420700;Note=Hypothetical protein.;Transcript_evidence=tplb0028c09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0420700-00
Chr04	irgsp1_rep	five_prime_UTR	20812005	20812787	.	-	.	Parent=Os04t0420700-00
Chr04	irgsp1_rep	CDS	20811708	20812004	.	-	0	Parent=Os04t0420700-00
Chr04	irgsp1_rep	three_prime_UTR	20811155	20811707	.	-	.	Parent=Os04t0420700-00
Chr04	irgsp1_rep	mRNA	20814255	20820363	.	-	.	ID=Os04t0420801-00;Name=Os04t0420801-00;Locus_id=Os04g0420801;Note=Hypothetical protein.;Transcript_evidence=tplb0028c09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0420801-00
Chr04	irgsp1_rep	five_prime_UTR	20819561	20820363	.	-	.	Parent=Os04t0420801-00
Chr04	irgsp1_rep	CDS	20819264	20819560	.	-	0	Parent=Os04t0420801-00
Chr04	irgsp1_rep	three_prime_UTR	20818358	20819263	.	-	.	Parent=Os04t0420801-00
Chr04	irgsp1_rep	three_prime_UTR	20814255	20814530	.	-	.	Parent=Os04t0420801-00
Chr04	irgsp1_rep	mRNA	20817908	20819301	.	+	.	ID=Os04t0420900-01;Name=Os04t0420900-01;Locus_id=Os04g0420900;Note=Similar to H0525E10.7 protein.;Transcript_evidence=AK064414 (DDBJ%2C Best hit);ORF_evidence=Q01K01 (UniProt);GO=Biological Process: recognition of pollen (GO:0048544),Molecular Function: sugar binding (GO:0005529);InterPro=S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),PAN-2 domain (IPR013227);NIAS_FLcDNA=002-110-A10;TENOR=Os04t0420900-01
Chr04	irgsp1_rep	five_prime_UTR	20817908	20817983	.	+	.	Parent=Os04t0420900-01
Chr04	irgsp1_rep	CDS	20817984	20819301	.	+	0	Parent=Os04t0420900-01
Chr04	irgsp1_rep	mRNA	20817936	20820655	.	+	.	ID=Os04t0420900-02;Name=Os04t0420900-02;Locus_id=Os04g0420900;Note=Similar to Receptor-like protein kinase.;Transcript_evidence=AK101902 (DDBJ%2C Best hit);ORF_evidence=Q01K01 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),S-receptor-like serine/threonine-protein kinase (IPR024171);NIAS_FLcDNA=J033071C04;Expression=AK101902;TENOR=Os04t0420900-02;KEGG=Os04t0420900-02
Chr04	irgsp1_rep	five_prime_UTR	20817936	20817983	.	+	.	Parent=Os04t0420900-02
Chr04	irgsp1_rep	CDS	20817984	20820401	.	+	0	Parent=Os04t0420900-02
Chr04	irgsp1_rep	three_prime_UTR	20820402	20820655	.	+	.	Parent=Os04t0420900-02
Chr04	irgsp1_rep	mRNA	20847290	20851602	.	-	.	ID=Os04t0421700-01;Name=Os04t0421700-01;Locus_id=Os04g0421700;Note=FAR1 domain containing protein.;Transcript_evidence=AK072998 (DDBJ%2C Best hit);ORF_evidence=Q01JZ9 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=FAR1 DNA binding domain (IPR004330),Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);NIAS_FLcDNA=J023143C23;Expression=AK072998;TENOR=Os04t0421700-01;KEGG=Os04t0421700-01
Chr04	irgsp1_rep	five_prime_UTR	20851492	20851602	.	-	.	Parent=Os04t0421700-01
Chr04	irgsp1_rep	CDS	20848750	20851491	.	-	0	Parent=Os04t0421700-01
Chr04	irgsp1_rep	CDS	20848335	20848400	.	-	0	Parent=Os04t0421700-01
Chr04	irgsp1_rep	CDS	20848132	20848209	.	-	0	Parent=Os04t0421700-01
Chr04	irgsp1_rep	CDS	20847994	20848053	.	-	0	Parent=Os04t0421700-01
Chr04	irgsp1_rep	CDS	20847827	20847835	.	-	0	Parent=Os04t0421700-01
Chr04	irgsp1_rep	three_prime_UTR	20847290	20847826	.	-	.	Parent=Os04t0421700-01
Chr04	irgsp1_rep	mRNA	20852260	20853639	.	-	.	ID=Os04t0421800-01;Name=Os04t0421800-01;Locus_id=Os04g0421800;Note=EF-Hand type domain containing protein.;Transcript_evidence=AK068951 (DDBJ%2C Best hit);ORF_evidence=Q01JZ8 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand-like domain (IPR011992);NIAS_FLcDNA=J023003L17;Expression=AK068951;TENOR=Os04t0421800-01;KEGG=Os04t0421800-01
Chr04	irgsp1_rep	five_prime_UTR	20853639	20853639	.	-	.	Parent=Os04t0421800-01
Chr04	irgsp1_rep	CDS	20853567	20853638	.	-	0	Parent=Os04t0421800-01
Chr04	irgsp1_rep	CDS	20852591	20853406	.	-	0	Parent=Os04t0421800-01
Chr04	irgsp1_rep	three_prime_UTR	20852260	20852590	.	-	.	Parent=Os04t0421800-01
Chr04	irgsp1_rep	mRNA	20858074	20858636	.	+	.	ID=Os04t0421850-00;Name=Os04t0421850-00;Locus_id=Os04g0421850;Note=Hypothetical protein.;Transcript_evidence=EU949573 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0421850-00
Chr04	irgsp1_rep	CDS	20858074	20858636	.	+	0	Parent=Os04t0421850-00
Chr04	irgsp1_rep	mRNA	20862593	20872470	.	+	.	ID=Os04t0421900-01;Name=Os04t0421900-01;Locus_id=Os04g0421900;Oryzabase Gene Symbol Synonym(s)=SEC5;Oryzabase Gene Name Synonym(s)=EXOCYST COMPLEX COMPONENT SEC5;Note=Similar to H0525E10.11 protein.;Transcript_evidence=AK066958 (DDBJ%2C Best hit);ORF_evidence=Q01JZ7 (UniProt);InterPro=Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=J013091F17;Oryzabase=19097;Expression=AK066958;TENOR=Os04t0421900-01;KEGG=Os04t0421900-01
Chr04	irgsp1_rep	five_prime_UTR	20862593	20862694	.	+	.	Parent=Os04t0421900-01
Chr04	irgsp1_rep	CDS	20862695	20863111	.	+	0	Parent=Os04t0421900-01
Chr04	irgsp1_rep	CDS	20863875	20864020	.	+	0	Parent=Os04t0421900-01
Chr04	irgsp1_rep	CDS	20864412	20864509	.	+	1	Parent=Os04t0421900-01
Chr04	irgsp1_rep	CDS	20864586	20864780	.	+	2	Parent=Os04t0421900-01
Chr04	irgsp1_rep	CDS	20864878	20865005	.	+	2	Parent=Os04t0421900-01
Chr04	irgsp1_rep	CDS	20865100	20865258	.	+	0	Parent=Os04t0421900-01
Chr04	irgsp1_rep	CDS	20866327	20866431	.	+	0	Parent=Os04t0421900-01
Chr04	irgsp1_rep	CDS	20866693	20866767	.	+	0	Parent=Os04t0421900-01
Chr04	irgsp1_rep	CDS	20866861	20866998	.	+	0	Parent=Os04t0421900-01
Chr04	irgsp1_rep	CDS	20867117	20867299	.	+	0	Parent=Os04t0421900-01
Chr04	irgsp1_rep	CDS	20867570	20867725	.	+	0	Parent=Os04t0421900-01
Chr04	irgsp1_rep	CDS	20867823	20867946	.	+	0	Parent=Os04t0421900-01
Chr04	irgsp1_rep	CDS	20868028	20868238	.	+	2	Parent=Os04t0421900-01
Chr04	irgsp1_rep	CDS	20868822	20868937	.	+	1	Parent=Os04t0421900-01
Chr04	irgsp1_rep	CDS	20869036	20869261	.	+	2	Parent=Os04t0421900-01
Chr04	irgsp1_rep	CDS	20869426	20869519	.	+	1	Parent=Os04t0421900-01
Chr04	irgsp1_rep	CDS	20870406	20870483	.	+	0	Parent=Os04t0421900-01
Chr04	irgsp1_rep	CDS	20870824	20870880	.	+	0	Parent=Os04t0421900-01
Chr04	irgsp1_rep	CDS	20871030	20871179	.	+	0	Parent=Os04t0421900-01
Chr04	irgsp1_rep	CDS	20871294	20871500	.	+	0	Parent=Os04t0421900-01
Chr04	irgsp1_rep	CDS	20871792	20872034	.	+	0	Parent=Os04t0421900-01
Chr04	irgsp1_rep	three_prime_UTR	20872035	20872470	.	+	.	Parent=Os04t0421900-01
Chr04	irgsp1_rep	mRNA	20873336	20876370	.	+	.	ID=Os04t0422000-01;Name=Os04t0422000-01;Locus_id=Os04g0422000;RAP-DB Gene Symbol Synonym(s)=OsFBN5;RAP-DB Gene Name Synonym(s)=fibrillin5;CGSNL Gene Symbol=FBN5;CGSNL Gene Name=FIBRILLIN 5;Oryzabase Gene Symbol Synonym(s)=OsFBN5;Oryzabase Gene Name Synonym(s)=fibrillin5%2C fibrillin 5;Note=Ortholog of Arabidopsis FBN5 (AtFBN5)%2C Fibrillin%2C Plastid lipid binding protein%2C Plastoquinone-9 (PQ-9) biosynthesis;Transcript_evidence=AK070660;ORF_evidence=Q0JD85;InterPro=Plastid lipid-associated protein/fibrillin conserved domain (IPR006843);NIAS_FLcDNA=J023056J12;Manual Curation=October 5%2C 2020;Literature_PMID=28751900;Oryzabase=21787;Expression=AK070660;TENOR=Os04t0422000-01;KEGG=Os04t0422000-01
Chr04	irgsp1_rep	five_prime_UTR	20873336	20873605	.	+	.	Parent=Os04t0422000-01
Chr04	irgsp1_rep	CDS	20873606	20873897	.	+	0	Parent=Os04t0422000-01
Chr04	irgsp1_rep	CDS	20874048	20874166	.	+	2	Parent=Os04t0422000-01
Chr04	irgsp1_rep	CDS	20874416	20874538	.	+	0	Parent=Os04t0422000-01
Chr04	irgsp1_rep	CDS	20874976	20875074	.	+	0	Parent=Os04t0422000-01
Chr04	irgsp1_rep	CDS	20875186	20875230	.	+	0	Parent=Os04t0422000-01
Chr04	irgsp1_rep	CDS	20875503	20875576	.	+	0	Parent=Os04t0422000-01
Chr04	irgsp1_rep	CDS	20875794	20875878	.	+	1	Parent=Os04t0422000-01
Chr04	irgsp1_rep	three_prime_UTR	20875879	20876370	.	+	.	Parent=Os04t0422000-01
Chr04	irgsp1_rep	mRNA	20873467	20876244	.	+	.	ID=Os04t0422000-02;Name=Os04t0422000-02;Locus_id=Os04g0422000;CGSNL Gene Symbol=FBN5;CGSNL Gene Name=FIBRILLIN 5;Oryzabase Gene Symbol Synonym(s)=OsFBN5;Oryzabase Gene Name Synonym(s)=fibrillin5%2C fibrillin 5;Note=PAP fibrillin family protein.;Transcript_evidence=AK060398 (DDBJ%2C Best hit);ORF_evidence=Q01JZ6 (UniProt);GO=Cellular Component: chloroplast (GO:0009507),Molecular Function: structural molecule activity (GO:0005198);InterPro=Plastid lipid-associated protein/fibrillin conserved domain (IPR006843);NIAS_FLcDNA=001-010-B06;Oryzabase=21787;Expression=AK060398;TENOR=Os04t0422000-02;KEGG=Os04t0422000-02
Chr04	irgsp1_rep	five_prime_UTR	20873467	20873605	.	+	.	Parent=Os04t0422000-02
Chr04	irgsp1_rep	CDS	20873606	20873897	.	+	0	Parent=Os04t0422000-02
Chr04	irgsp1_rep	CDS	20874048	20874166	.	+	2	Parent=Os04t0422000-02
Chr04	irgsp1_rep	CDS	20874416	20874538	.	+	0	Parent=Os04t0422000-02
Chr04	irgsp1_rep	CDS	20874976	20875074	.	+	0	Parent=Os04t0422000-02
Chr04	irgsp1_rep	CDS	20875186	20875230	.	+	0	Parent=Os04t0422000-02
Chr04	irgsp1_rep	CDS	20875503	20875576	.	+	0	Parent=Os04t0422000-02
Chr04	irgsp1_rep	CDS	20875794	20875878	.	+	1	Parent=Os04t0422000-02
Chr04	irgsp1_rep	three_prime_UTR	20875879	20876244	.	+	.	Parent=Os04t0422000-02
Chr04	irgsp1_rep	mRNA	20873475	20876240	.	+	.	ID=Os04t0422000-03;Name=Os04t0422000-03;Locus_id=Os04g0422000;CGSNL Gene Symbol=FBN5;CGSNL Gene Name=FIBRILLIN 5;Oryzabase Gene Symbol Synonym(s)=OsFBN5;Oryzabase Gene Name Synonym(s)=fibrillin5%2C fibrillin 5;Note=Similar to H0525E10.12 protein.;Transcript_evidence=AK106080 (DDBJ%2C Best hit);ORF_evidence=Q01JZ6 (UniProt);GO=Cellular Component: chloroplast (GO:0009507),Molecular Function: structural molecule activity (GO:0005198);InterPro=Plastid lipid-associated protein/fibrillin conserved domain (IPR006843);NIAS_FLcDNA=001-207-A07;Oryzabase=21787;Expression=AK106080;TENOR=Os04t0422000-03;KEGG=Os04t0422000-03
Chr04	irgsp1_rep	five_prime_UTR	20873475	20873605	.	+	.	Parent=Os04t0422000-03
Chr04	irgsp1_rep	CDS	20873606	20873897	.	+	0	Parent=Os04t0422000-03
Chr04	irgsp1_rep	CDS	20874048	20874166	.	+	2	Parent=Os04t0422000-03
Chr04	irgsp1_rep	CDS	20874416	20874538	.	+	0	Parent=Os04t0422000-03
Chr04	irgsp1_rep	CDS	20874947	20874952	.	+	0	Parent=Os04t0422000-03
Chr04	irgsp1_rep	three_prime_UTR	20874953	20875074	.	+	.	Parent=Os04t0422000-03
Chr04	irgsp1_rep	three_prime_UTR	20875186	20875230	.	+	.	Parent=Os04t0422000-03
Chr04	irgsp1_rep	three_prime_UTR	20875503	20876240	.	+	.	Parent=Os04t0422000-03
Chr04	irgsp1_rep	mRNA	20880786	20881423	.	-	.	ID=Os04t0422200-00;Name=Os04t0422200-00;Locus_id=Os04g0422200;CGSNL Gene Symbol=ENODL13;CGSNL Gene Name=EARLY NODULIN LIKE PROTEIN 13;Oryzabase Gene Symbol Synonym(s)=OsENODL13;Oryzabase Gene Name Synonym(s)=early nodulin-like protein 13;Note=Similar to H0525E10.13 protein.;Transcript_evidence=EU975418 (DDBJ);ORF_evidence=Q01JZ5 (UniProt);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);Oryzabase=9738;TENOR=Os04t0422200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	20881384	20881423	.	-	.	Parent=Os04t0422200-00
Chr04	irgsp1_rep	CDS	20881173	20881383	.	-	0	Parent=Os04t0422200-00
Chr04	irgsp1_rep	CDS	20880786	20880988	.	-	2	Parent=Os04t0422200-00
Chr04	irgsp1_rep	mRNA	20882277	20885593	.	-	.	ID=Os04t0422300-01;Name=Os04t0422300-01;Locus_id=Os04g0422300;Note=Protein of unknown function DUF6%2C transmembrane domain containing protein.;Transcript_evidence=AK107131 (DDBJ%2C Best hit);ORF_evidence=Q01JZ4 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=002-124-C05;Expression=AK107131;TENOR=Os04t0422300-01;KEGG=Os04t0422300-01
Chr04	irgsp1_rep	five_prime_UTR	20885489	20885593	.	-	.	Parent=Os04t0422300-01
Chr04	irgsp1_rep	CDS	20885307	20885488	.	-	0	Parent=Os04t0422300-01
Chr04	irgsp1_rep	CDS	20885043	20885105	.	-	1	Parent=Os04t0422300-01
Chr04	irgsp1_rep	CDS	20884800	20884916	.	-	1	Parent=Os04t0422300-01
Chr04	irgsp1_rep	CDS	20883945	20884377	.	-	1	Parent=Os04t0422300-01
Chr04	irgsp1_rep	CDS	20883166	20883317	.	-	0	Parent=Os04t0422300-01
Chr04	irgsp1_rep	CDS	20882542	20882719	.	-	1	Parent=Os04t0422300-01
Chr04	irgsp1_rep	three_prime_UTR	20882277	20882541	.	-	.	Parent=Os04t0422300-01
Chr04	irgsp1_rep	mRNA	20892244	20892858	.	+	.	ID=Os04t0422500-01;Name=Os04t0422500-01;Locus_id=Os04g0422500;Note=Similar to H0525E10.15 protein.;Transcript_evidence=AK108092 (DDBJ%2C Best hit);ORF_evidence=Q01JZ3 (UniProt);NIAS_FLcDNA=002-139-A04;Expression=AK108092;TENOR=Os04t0422500-01;KEGG=Os04t0422500-01
Chr04	irgsp1_rep	five_prime_UTR	20892244	20892274	.	+	.	Parent=Os04t0422500-01
Chr04	irgsp1_rep	CDS	20892275	20892790	.	+	0	Parent=Os04t0422500-01
Chr04	irgsp1_rep	three_prime_UTR	20892791	20892858	.	+	.	Parent=Os04t0422500-01
Chr04	irgsp1_rep	mRNA	20897566	20902860	.	+	.	ID=Os04t0422600-01;Name=Os04t0422600-01;Locus_id=Os04g0422600;Note=Similar to H0525E10.16 protein.;Transcript_evidence=AK099964 (DDBJ%2C Best hit);ORF_evidence=Q01JZ2 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=J013126L24;TENOR=Os04t0422600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	20897566	20897685	.	+	.	Parent=Os04t0422600-01
Chr04	irgsp1_rep	CDS	20897686	20897867	.	+	0	Parent=Os04t0422600-01
Chr04	irgsp1_rep	CDS	20898977	20899039	.	+	1	Parent=Os04t0422600-01
Chr04	irgsp1_rep	CDS	20900500	20900509	.	+	1	Parent=Os04t0422600-01
Chr04	irgsp1_rep	three_prime_UTR	20900510	20900592	.	+	.	Parent=Os04t0422600-01
Chr04	irgsp1_rep	three_prime_UTR	20901235	20901895	.	+	.	Parent=Os04t0422600-01
Chr04	irgsp1_rep	three_prime_UTR	20901995	20902153	.	+	.	Parent=Os04t0422600-01
Chr04	irgsp1_rep	three_prime_UTR	20902259	20902410	.	+	.	Parent=Os04t0422600-01
Chr04	irgsp1_rep	three_prime_UTR	20902517	20902860	.	+	.	Parent=Os04t0422600-01
Chr04	irgsp1_rep	mRNA	20904166	20905329	.	-	.	ID=Os04t0422700-01;Name=Os04t0422700-01;Locus_id=Os04g0422700;Note=Similar to H0525E10.17 protein.;Transcript_evidence=AK111485 (DDBJ%2C Best hit);ORF_evidence=Q01K08 (UniProt);NIAS_FLcDNA=002-188-G05;TENOR=Os04t0422700-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	20905286	20905329	.	-	.	Parent=Os04t0422700-01
Chr04	irgsp1_rep	CDS	20905154	20905285	.	-	0	Parent=Os04t0422700-01
Chr04	irgsp1_rep	CDS	20904679	20905050	.	-	0	Parent=Os04t0422700-01
Chr04	irgsp1_rep	three_prime_UTR	20904166	20904678	.	-	.	Parent=Os04t0422700-01
Chr04	irgsp1_rep	mRNA	20911398	20914480	.	+	.	ID=Os04t0422900-00;Name=Os04t0422900-00;Locus_id=Os04g0422900;Note=Hypothetical conserved gene.;Transcript_evidence=AK111398 (DDBJ%2C Secondary hit);ORF_evidence=NP_001176912.1 (RefSeq);TENOR=Os04t0422900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	20911398	20911706	.	+	.	Parent=Os04t0422900-00
Chr04	irgsp1_rep	five_prime_UTR	20912533	20912592	.	+	.	Parent=Os04t0422900-00
Chr04	irgsp1_rep	five_prime_UTR	20913094	20913112	.	+	.	Parent=Os04t0422900-00
Chr04	irgsp1_rep	CDS	20913113	20913604	.	+	0	Parent=Os04t0422900-00
Chr04	irgsp1_rep	CDS	20913700	20913894	.	+	0	Parent=Os04t0422900-00
Chr04	irgsp1_rep	three_prime_UTR	20913895	20914480	.	+	.	Parent=Os04t0422900-00
Chr04	irgsp1_rep	mRNA	20914522	20916314	.	+	.	ID=Os04t0422950-00;Name=Os04t0422950-00;Locus_id=Os04g0422950;Note=Myb/SANT-like domain domain containing protein.;Transcript_evidence=BT066123 (DDBJ);ORF_evidence=NP_001176912.1 (RefSeq);InterPro=Myb/SANT-like domain (IPR024752);TENOR=Os04t0422950-00
Chr04	irgsp1_rep	five_prime_UTR	20914522	20914648	.	+	.	Parent=Os04t0422950-00
Chr04	irgsp1_rep	five_prime_UTR	20914739	20914743	.	+	.	Parent=Os04t0422950-00
Chr04	irgsp1_rep	CDS	20914744	20915045	.	+	0	Parent=Os04t0422950-00
Chr04	irgsp1_rep	CDS	20915196	20915211	.	+	1	Parent=Os04t0422950-00
Chr04	irgsp1_rep	three_prime_UTR	20915212	20915272	.	+	.	Parent=Os04t0422950-00
Chr04	irgsp1_rep	three_prime_UTR	20915718	20916314	.	+	.	Parent=Os04t0422950-00
Chr04	irgsp1_rep	mRNA	20924191	20926252	.	+	.	ID=Os04t0423100-00;Name=Os04t0423100-00;Locus_id=Os04g0423100;Note=Monooxygenase%2C FAD-binding domain containing protein.;Transcript_evidence=AK360863 (DDBJ);ORF_evidence=B8ATR1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Monooxygenase%2C FAD-binding (IPR002938),Aromatic-ring hydroxylase-like (IPR003042);TENOR=Os04t0423100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	20924191	20924200	.	+	.	Parent=Os04t0423100-00
Chr04	irgsp1_rep	CDS	20924201	20924481	.	+	0	Parent=Os04t0423100-00
Chr04	irgsp1_rep	CDS	20924601	20924666	.	+	1	Parent=Os04t0423100-00
Chr04	irgsp1_rep	CDS	20924764	20925178	.	+	1	Parent=Os04t0423100-00
Chr04	irgsp1_rep	CDS	20925659	20926252	.	+	0	Parent=Os04t0423100-00
Chr04	irgsp1_rep	mRNA	20927838	20928900	.	+	.	ID=Os04t0423200-00;Name=Os04t0423200-00;Locus_id=Os04g0423200;Note=Conserved hypothetical protein.;Transcript_evidence=AK373784 (DDBJ);ORF_evidence=NP_001173935.1 (RefSeq);TENOR=Os04t0423200-00
Chr04	irgsp1_rep	CDS	20927838	20928899	.	+	0	Parent=Os04t0423200-00
Chr04	irgsp1_rep	three_prime_UTR	20928900	20928900	.	+	.	Parent=Os04t0423200-00
Chr04	irgsp1_rep	mRNA	20934962	20936052	.	-	.	ID=Os04t0423400-01;Name=Os04t0423400-01;Locus_id=Os04g0423400;Oryzabase Gene Symbol Synonym(s)=OsASR2%2C OsASR4%2C Asr4%2C ASR2;Oryzabase Gene Name Synonym(s)=Abiotic Stress Responsive 2%2C "ABA-%2C stress and ripening-induced protein 4";Note=Similar to OSIGBa0076I14.3 protein.;Transcript_evidence=AK104594 (DDBJ%2C Best hit),AK061494 (DDBJ%2C Best hit),AK103997 (DDBJ%2C Best hit),AK104264 (DDBJ%2C Best hit),AK105960 (DDBJ%2C Best hit);ORF_evidence=Q01L89 (UniProt);GO=Biological Process: response to stress (GO:0006950);InterPro=ABA/WDS induced protein (IPR003496);NIAS_FLcDNA=006-308-C11,006-309-C05,001-019-B11,006-310-D07,001-205-E01;Oryzabase=14347;Expression=AK104594;TENOR=Os04t0423400-01;KEGG=Os04t0423400-01
Chr04	irgsp1_rep	five_prime_UTR	20935951	20936052	.	-	.	Parent=Os04t0423400-01
Chr04	irgsp1_rep	CDS	20935492	20935950	.	-	0	Parent=Os04t0423400-01
Chr04	irgsp1_rep	CDS	20935177	20935407	.	-	0	Parent=Os04t0423400-01
Chr04	irgsp1_rep	three_prime_UTR	20934962	20935176	.	-	.	Parent=Os04t0423400-01
Chr04	irgsp1_rep	mRNA	20934960	20936052	.	-	.	ID=Os04t0423400-02;Name=Os04t0423400-02;Locus_id=Os04g0423400;Oryzabase Gene Symbol Synonym(s)=OsASR2%2C OsASR4%2C Asr4%2C ASR2;Oryzabase Gene Name Synonym(s)=Abiotic Stress Responsive 2%2C "ABA-%2C stress and ripening-induced protein 4";Note=Similar to OSIGBa0076I14.3 protein.;Transcript_evidence=AK061578 (DDBJ%2C Best hit);ORF_evidence=Q01L89 (UniProt);NIAS_FLcDNA=006-311-H02;Oryzabase=14347;Expression=AK061578;TENOR=Os04t0423400-02;KEGG=Os04t0423400-02
Chr04	irgsp1_rep	five_prime_UTR	20935951	20936052	.	-	.	Parent=Os04t0423400-02
Chr04	irgsp1_rep	CDS	20935480	20935950	.	-	0	Parent=Os04t0423400-02
Chr04	irgsp1_rep	three_prime_UTR	20934960	20935479	.	-	.	Parent=Os04t0423400-02
Chr04	irgsp1_rep	mRNA	20941065	20948918	.	-	.	ID=Os04t0423600-01;Name=Os04t0423600-01;Locus_id=Os04g0423600;Oryzabase Gene Symbol Synonym(s)=OsSET18%2C SDG738;Oryzabase Gene Name Synonym(s)=SET protein 18;Note=SET domain containing protein.;Transcript_evidence=AK065331 (DDBJ%2C Best hit);ORF_evidence=Q01L87 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=SET domain (IPR001214);NIAS_FLcDNA=J013000M22;Oryzabase=13383;TENOR=Os04t0423600-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	20948752	20948918	.	-	.	Parent=Os04t0423600-01
Chr04	irgsp1_rep	five_prime_UTR	20948330	20948343	.	-	.	Parent=Os04t0423600-01
Chr04	irgsp1_rep	CDS	20947565	20948329	.	-	0	Parent=Os04t0423600-01
Chr04	irgsp1_rep	CDS	20947410	20947449	.	-	0	Parent=Os04t0423600-01
Chr04	irgsp1_rep	CDS	20947231	20947331	.	-	2	Parent=Os04t0423600-01
Chr04	irgsp1_rep	CDS	20946301	20946399	.	-	0	Parent=Os04t0423600-01
Chr04	irgsp1_rep	CDS	20945000	20945920	.	-	0	Parent=Os04t0423600-01
Chr04	irgsp1_rep	three_prime_UTR	20944942	20944999	.	-	.	Parent=Os04t0423600-01
Chr04	irgsp1_rep	three_prime_UTR	20944594	20944647	.	-	.	Parent=Os04t0423600-01
Chr04	irgsp1_rep	three_prime_UTR	20944394	20944472	.	-	.	Parent=Os04t0423600-01
Chr04	irgsp1_rep	three_prime_UTR	20943935	20944141	.	-	.	Parent=Os04t0423600-01
Chr04	irgsp1_rep	three_prime_UTR	20943650	20943811	.	-	.	Parent=Os04t0423600-01
Chr04	irgsp1_rep	three_prime_UTR	20941830	20942299	.	-	.	Parent=Os04t0423600-01
Chr04	irgsp1_rep	three_prime_UTR	20941065	20941787	.	-	.	Parent=Os04t0423600-01
Chr04	irgsp1_rep	mRNA	20944768	20948886	.	-	.	ID=Os04t0423600-02;Name=Os04t0423600-02;Locus_id=Os04g0423600;Oryzabase Gene Symbol Synonym(s)=OsSET18%2C SDG738;Oryzabase Gene Name Synonym(s)=SET protein 18;Note=Similar to OSIGBa0076I14.5 protein.;Transcript_evidence=AK100500 (DDBJ%2C Best hit);ORF_evidence=Q01L87 (UniProt);NIAS_FLcDNA=J023099G24;Oryzabase=13383;Expression=AK100500;TENOR=Os04t0423600-02;KEGG=Os04t0423600-02
Chr04	irgsp1_rep	five_prime_UTR	20948752	20948886	.	-	.	Parent=Os04t0423600-02
Chr04	irgsp1_rep	five_prime_UTR	20948330	20948343	.	-	.	Parent=Os04t0423600-02
Chr04	irgsp1_rep	CDS	20947751	20948329	.	-	0	Parent=Os04t0423600-02
Chr04	irgsp1_rep	CDS	20947547	20947636	.	-	0	Parent=Os04t0423600-02
Chr04	irgsp1_rep	three_prime_UTR	20947410	20947546	.	-	.	Parent=Os04t0423600-02
Chr04	irgsp1_rep	three_prime_UTR	20947231	20947331	.	-	.	Parent=Os04t0423600-02
Chr04	irgsp1_rep	three_prime_UTR	20944768	20945920	.	-	.	Parent=Os04t0423600-02
Chr04	irgsp1_rep	mRNA	20941052	20942351	.	-	.	ID=Os04t0423600-03;Name=Os04t0423600-03;Locus_id=Os04g0423600;Oryzabase Gene Symbol Synonym(s)=OsSET18%2C SDG738;Oryzabase Gene Name Synonym(s)=SET protein 18;Note=Similar to OSIGBa0076I14.4 protein.;Transcript_evidence=AK066084 (DDBJ%2C Best hit);ORF_evidence=Q01L88 (UniProt);NIAS_FLcDNA=J013051M03;Oryzabase=13383;TENOR=Os04t0423600-03;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	20942299	20942351	.	-	.	Parent=Os04t0423600-03
Chr04	irgsp1_rep	CDS	20941876	20942298	.	-	0	Parent=Os04t0423600-03
Chr04	irgsp1_rep	three_prime_UTR	20941841	20941875	.	-	.	Parent=Os04t0423600-03
Chr04	irgsp1_rep	three_prime_UTR	20941052	20941797	.	-	.	Parent=Os04t0423600-03
Chr04	irgsp1_rep	mRNA	20949658	20952802	.	-	.	ID=Os04t0423700-01;Name=Os04t0423700-01;Locus_id=Os04g0423700;CGSNL Gene Symbol=ASR6;CGSNL Gene Name=ABSCISIC ACID-STRESS-RIPENING-INDUCIBLE 6 PROTEIN;Oryzabase Gene Symbol Synonym(s)=Asr6;Note=Similar to predicted protein.;Transcript_evidence=AK288427 (DDBJ%2C Best hit);ORF_evidence=Q7X8A2 (UniProt);NIAS_FLcDNA=J090032M21;Oryzabase=8409;TENOR=Os04t0423700-01;KEGG=Os04t0423700-01
Chr04	irgsp1_rep	five_prime_UTR	20952738	20952802	.	-	.	Parent=Os04t0423700-01
Chr04	irgsp1_rep	CDS	20952373	20952737	.	-	0	Parent=Os04t0423700-01
Chr04	irgsp1_rep	CDS	20950787	20951181	.	-	1	Parent=Os04t0423700-01
Chr04	irgsp1_rep	CDS	20950511	20950704	.	-	2	Parent=Os04t0423700-01
Chr04	irgsp1_rep	CDS	20949892	20950287	.	-	0	Parent=Os04t0423700-01
Chr04	irgsp1_rep	three_prime_UTR	20949658	20949891	.	-	.	Parent=Os04t0423700-01
Chr04	irgsp1_rep	mRNA	20954485	20955826	.	+	.	ID=Os04t0423800-01;Name=Os04t0423800-01;Locus_id=Os04g0423800;Oryzabase Gene Symbol Synonym(s)=prx54;Oryzabase Gene Name Synonym(s)=class III peroxidase 54;Note=Peroxidase (EC 1.11.1.7).;Transcript_evidence=AK108989 (DDBJ%2C Best hit);ORF_evidence=B6E1W9 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=002-153-F11;Oryzabase=14579;Expression=AK108989;TENOR=Os04t0423800-01;KEGG=Os04t0423800-01 (EC:1.11.1.7)
Chr04	irgsp1_rep	five_prime_UTR	20954485	20954566	.	+	.	Parent=Os04t0423800-01
Chr04	irgsp1_rep	CDS	20954567	20955604	.	+	0	Parent=Os04t0423800-01
Chr04	irgsp1_rep	three_prime_UTR	20955605	20955826	.	+	.	Parent=Os04t0423800-01
Chr04	irgsp1_rep	mRNA	20966881	20972795	.	+	.	ID=Os04t0424200-00;Name=Os04t0424200-00;Locus_id=Os04g0424200;Note=Similar to OSIGBa0076I14.10 protein.;Transcript_evidence=AK362665 (DDBJ);ORF_evidence=Q01L82 (UniProt);TENOR=Os04t0424200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	20966881	20967300	.	+	0	Parent=Os04t0424200-00
Chr04	irgsp1_rep	CDS	20967394	20967535	.	+	0	Parent=Os04t0424200-00
Chr04	irgsp1_rep	CDS	20967654	20967793	.	+	2	Parent=Os04t0424200-00
Chr04	irgsp1_rep	CDS	20968098	20968295	.	+	0	Parent=Os04t0424200-00
Chr04	irgsp1_rep	CDS	20968400	20968597	.	+	0	Parent=Os04t0424200-00
Chr04	irgsp1_rep	CDS	20968689	20968724	.	+	0	Parent=Os04t0424200-00
Chr04	irgsp1_rep	CDS	20968890	20968975	.	+	0	Parent=Os04t0424200-00
Chr04	irgsp1_rep	CDS	20969161	20969211	.	+	1	Parent=Os04t0424200-00
Chr04	irgsp1_rep	CDS	20969593	20969701	.	+	1	Parent=Os04t0424200-00
Chr04	irgsp1_rep	CDS	20969794	20969899	.	+	0	Parent=Os04t0424200-00
Chr04	irgsp1_rep	CDS	20970074	20970171	.	+	2	Parent=Os04t0424200-00
Chr04	irgsp1_rep	CDS	20970246	20970350	.	+	0	Parent=Os04t0424200-00
Chr04	irgsp1_rep	CDS	20970445	20970537	.	+	0	Parent=Os04t0424200-00
Chr04	irgsp1_rep	CDS	20970674	20970727	.	+	0	Parent=Os04t0424200-00
Chr04	irgsp1_rep	CDS	20971047	20971105	.	+	0	Parent=Os04t0424200-00
Chr04	irgsp1_rep	CDS	20971189	20971273	.	+	1	Parent=Os04t0424200-00
Chr04	irgsp1_rep	CDS	20971349	20971708	.	+	0	Parent=Os04t0424200-00
Chr04	irgsp1_rep	CDS	20971811	20971933	.	+	0	Parent=Os04t0424200-00
Chr04	irgsp1_rep	CDS	20972408	20972494	.	+	0	Parent=Os04t0424200-00
Chr04	irgsp1_rep	CDS	20972577	20972795	.	+	0	Parent=Os04t0424200-00
Chr04	irgsp1_rep	mRNA	21001722	21010737	.	+	.	ID=Os04t0425100-01;Name=Os04t0425100-01;Locus_id=Os04g0425100;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK111894 (DDBJ%2C Best hit);ORF_evidence=Q01L80 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C CW-type (IPR011124),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-type%2C conserved site (IPR019786),Zinc finger%2C PHD-finger (IPR019787);NIAS_FLcDNA=J033076L19;TENOR=Os04t0425100-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	21001722	21002011	.	+	.	Parent=Os04t0425100-01
Chr04	irgsp1_rep	five_prime_UTR	21004239	21004309	.	+	.	Parent=Os04t0425100-01
Chr04	irgsp1_rep	CDS	21004407	21005353	.	+	0	Parent=Os04t0425100-01
Chr04	irgsp1_rep	CDS	21006392	21006452	.	+	1	Parent=Os04t0425100-01
Chr04	irgsp1_rep	CDS	21006534	21006646	.	+	0	Parent=Os04t0425100-01
Chr04	irgsp1_rep	CDS	21007425	21007515	.	+	1	Parent=Os04t0425100-01
Chr04	irgsp1_rep	CDS	21007956	21008003	.	+	0	Parent=Os04t0425100-01
Chr04	irgsp1_rep	CDS	21010103	21010156	.	+	0	Parent=Os04t0425100-01
Chr04	irgsp1_rep	three_prime_UTR	21010157	21010737	.	+	.	Parent=Os04t0425100-01
Chr04	irgsp1_rep	mRNA	21001722	21010712	.	+	.	ID=Os04t0425100-02;Name=Os04t0425100-02;Locus_id=Os04g0425100;Note=Similar to OSIGBa0076I14.12 protein.;Transcript_evidence=AK288196 (DDBJ%2C Best hit);ORF_evidence=Q01L80 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-type%2C conserved site (IPR019786),Zinc finger%2C PHD-finger (IPR019787);NIAS_FLcDNA=J090007P03;TENOR=Os04t0425100-02;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	21001722	21002011	.	+	.	Parent=Os04t0425100-02
Chr04	irgsp1_rep	five_prime_UTR	21004239	21004309	.	+	.	Parent=Os04t0425100-02
Chr04	irgsp1_rep	CDS	21004407	21005366	.	+	0	Parent=Os04t0425100-02
Chr04	irgsp1_rep	three_prime_UTR	21005367	21006452	.	+	.	Parent=Os04t0425100-02
Chr04	irgsp1_rep	three_prime_UTR	21006534	21006646	.	+	.	Parent=Os04t0425100-02
Chr04	irgsp1_rep	three_prime_UTR	21007425	21007515	.	+	.	Parent=Os04t0425100-02
Chr04	irgsp1_rep	three_prime_UTR	21007956	21008003	.	+	.	Parent=Os04t0425100-02
Chr04	irgsp1_rep	three_prime_UTR	21010103	21010712	.	+	.	Parent=Os04t0425100-02
Chr04	irgsp1_rep	mRNA	21004392	21010335	.	-	.	ID=Os04t0425800-00;Name=Os04t0425800-00;Locus_id=Os04g0425800;Note=Hypothetical protein.;Transcript_evidence=tplb0045k11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0425800-00
Chr04	irgsp1_rep	five_prime_UTR	21010075	21010335	.	-	.	Parent=Os04t0425800-00
Chr04	irgsp1_rep	five_prime_UTR	21007423	21007535	.	-	.	Parent=Os04t0425800-00
Chr04	irgsp1_rep	five_prime_UTR	21006466	21006644	.	-	.	Parent=Os04t0425800-00
Chr04	irgsp1_rep	five_prime_UTR	21004955	21005346	.	-	.	Parent=Os04t0425800-00
Chr04	irgsp1_rep	CDS	21004676	21004954	.	-	0	Parent=Os04t0425800-00
Chr04	irgsp1_rep	three_prime_UTR	21004564	21004675	.	-	.	Parent=Os04t0425800-00
Chr04	irgsp1_rep	three_prime_UTR	21004392	21004470	.	-	.	Parent=Os04t0425800-00
Chr04	irgsp1_rep	mRNA	21182977	21184287	.	+	.	ID=Os04t0428002-01;Name=Os04t0428002-01;Locus_id=Os04g0428002;Note=Non-protein coding transcript.;Transcript_evidence=AK288838 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090074E01;TENOR=Os04t0428002-01
Chr04	irgsp1_rep	exon	21182977	21184287	.	+	.	Parent=Os04t0428002-01
Chr04	irgsp1_rep	mRNA	21207698	21208285	.	+	.	ID=Os04t0428300-00;Name=Os04t0428300-00;Locus_id=Os04g0428300;Note=Protein of unknown function DUF1677%2C Oryza sativa domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001052803.2 (RefSeq);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);TENOR=Os04t0428300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	21207698	21208285	.	+	0	Parent=Os04t0428300-00
Chr04	irgsp1_rep	mRNA	21214944	21215985	.	+	.	ID=Os04t0428500-01;Name=Os04t0428500-01;Locus_id=Os04g0428500;Note=Conserved hypothetical protein.;Transcript_evidence=AK109932 (DDBJ%2C Best hit);ORF_evidence=B8ATS5 (UniProt);NIAS_FLcDNA=002-152-G02;Expression=AK109932;TENOR=Os04t0428500-01;KEGG=Os04t0428500-01
Chr04	irgsp1_rep	five_prime_UTR	21214944	21215208	.	+	.	Parent=Os04t0428500-01
Chr04	irgsp1_rep	CDS	21215209	21215721	.	+	0	Parent=Os04t0428500-01
Chr04	irgsp1_rep	three_prime_UTR	21215722	21215985	.	+	.	Parent=Os04t0428500-01
Chr04	irgsp1_rep	mRNA	21227408	21230736	.	-	.	ID=Os04t0428900-01;Name=Os04t0428900-01;Locus_id=Os04g0428900;Note=Similar to CSN8.;Transcript_evidence=AK061355 (DDBJ%2C Best hit),AK099153 (DDBJ%2C Best hit);ORF_evidence=B6SQ52 (UniProt);InterPro=Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),COP9 signalosome%2C subunit CSN8 (IPR019280);NIAS_FLcDNA=006-303-H11,J023069F08;TENOR=Os04t0428900-01
Chr04	irgsp1_rep	five_prime_UTR	21230658	21230736	.	-	.	Parent=Os04t0428900-01
Chr04	irgsp1_rep	CDS	21230574	21230657	.	-	0	Parent=Os04t0428900-01
Chr04	irgsp1_rep	CDS	21230406	21230482	.	-	0	Parent=Os04t0428900-01
Chr04	irgsp1_rep	CDS	21230113	21230294	.	-	1	Parent=Os04t0428900-01
Chr04	irgsp1_rep	CDS	21229099	21229206	.	-	2	Parent=Os04t0428900-01
Chr04	irgsp1_rep	CDS	21227699	21227838	.	-	2	Parent=Os04t0428900-01
Chr04	irgsp1_rep	three_prime_UTR	21227408	21227698	.	-	.	Parent=Os04t0428900-01
Chr04	irgsp1_rep	mRNA	21232622	21235366	.	-	.	ID=Os04t0428950-00;Name=Os04t0428950-00;Locus_id=Os04g0428950;CGSNL Gene Symbol=ALBA5;CGSNL Gene Name=ACETYLATION LOWERS BINDING AFFINITY 5;Oryzabase Gene Symbol Synonym(s)=OsAlba5%2C Alba5;Oryzabase Gene Name Synonym(s)=acetylation lowers binding affinity protein 5%2C acetylation lowers binding affinity 5%2C Alba family protein 5;Note=Similar to Ribonuclease P.;Transcript_evidence=AK253124 (DDBJ);ORF_evidence=B6T7F3 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=DNA/RNA-binding protein Alba-like (IPR002775);Oryzabase=22405;TENOR=Os04t0428950-00;KEGG=Os04t0428950-00
Chr04	irgsp1_rep	five_prime_UTR	21235321	21235366	.	-	.	Parent=Os04t0428950-00
Chr04	irgsp1_rep	CDS	21235198	21235320	.	-	0	Parent=Os04t0428950-00
Chr04	irgsp1_rep	CDS	21234454	21234534	.	-	0	Parent=Os04t0428950-00
Chr04	irgsp1_rep	CDS	21234272	21234360	.	-	0	Parent=Os04t0428950-00
Chr04	irgsp1_rep	CDS	21234108	21234182	.	-	1	Parent=Os04t0428950-00
Chr04	irgsp1_rep	CDS	21233635	21233756	.	-	1	Parent=Os04t0428950-00
Chr04	irgsp1_rep	CDS	21233339	21233539	.	-	2	Parent=Os04t0428950-00
Chr04	irgsp1_rep	CDS	21232876	21232973	.	-	2	Parent=Os04t0428950-00
Chr04	irgsp1_rep	three_prime_UTR	21232622	21232875	.	-	.	Parent=Os04t0428950-00
Chr04	irgsp1_rep	mRNA	21248865	21249599	.	-	.	ID=Os04t0429050-00;Name=Os04t0429050-00;Locus_id=Os04g0429050;CGSNL Gene Symbol=ERF100;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 100;Oryzabase Gene Symbol Synonym(s)=OsERF#100%2C OsERF100%2C AP2/EREBP#036%2C AP2/EREBP36;Oryzabase Gene Name Synonym(s)=ethylene response factor 100%2C APETALA2/ethylene-responsive element binding protein 36;Note=Similar to OSIGBa0093L02.1 protein.;Transcript_evidence=EU946638 (DDBJ);ORF_evidence=Q01LG6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);Oryzabase=10601;TENOR=Os04t0429050-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	21248865	21249599	.	-	0	Parent=Os04t0429050-00
Chr04	irgsp1_rep	mRNA	21257080	21257180	.	-	.	ID=Os04t0429087-00;Name=Os04t0429087-00;Locus_id=Os04g0429087;Note=Non-protein coding transcript.;Transcript_evidence=AJ439885 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0429087-00
Chr04	irgsp1_rep	exon	21257080	21257180	.	-	.	Parent=Os04t0429087-00
Chr04	irgsp1_rep	mRNA	21258050	21262812	.	+	.	ID=Os04t0429100-01;Name=Os04t0429100-01;Locus_id=Os04g0429100;RAP-DB Gene Symbol Synonym(s)=OsSET19%2C SDG708;RAP-DB Gene Name Synonym(s)=SET protein 19%2C SET DOMAIN GROUP 708;Oryzabase Gene Symbol Synonym(s)=OsSET19%2C SDG708;Oryzabase Gene Name Synonym(s)=SET protein 19;Note=Histone H3 lysine 36-specific methyltransferase%2C Control of flowering time;Transcript_evidence=AK073414;ORF_evidence=B9FF78;GO=Molecular Function: protein binding (GO:0005515),Molecular Function: histone-lysine N-methyltransferase activity (GO:0018024),Cellular Component: nucleus (GO:0005634);InterPro=AWS domain (IPR006560),SET domain (IPR001214),Post-SET domain (IPR003616);NIAS_FLcDNA=J033039I24;Manual Curation=February 12%2C 2016;Literature_PMID=26639303,23762371;Oryzabase=13384;TENOR=Os04t0429100-01;B5toI1=Exon-intron structures and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	21258050	21258331	.	+	.	Parent=Os04t0429100-01
Chr04	irgsp1_rep	CDS	21258332	21258334	.	+	0	Parent=Os04t0429100-01
Chr04	irgsp1_rep	CDS	21258420	21258493	.	+	0	Parent=Os04t0429100-01
Chr04	irgsp1_rep	CDS	21258585	21258741	.	+	1	Parent=Os04t0429100-01
Chr04	irgsp1_rep	CDS	21259200	21259286	.	+	0	Parent=Os04t0429100-01
Chr04	irgsp1_rep	CDS	21259385	21259469	.	+	0	Parent=Os04t0429100-01
Chr04	irgsp1_rep	CDS	21260456	21260549	.	+	2	Parent=Os04t0429100-01
Chr04	irgsp1_rep	CDS	21260687	21260885	.	+	1	Parent=Os04t0429100-01
Chr04	irgsp1_rep	CDS	21261161	21261195	.	+	0	Parent=Os04t0429100-01
Chr04	irgsp1_rep	CDS	21261721	21262276	.	+	1	Parent=Os04t0429100-01
Chr04	irgsp1_rep	CDS	21262367	21262633	.	+	0	Parent=Os04t0429100-01
Chr04	irgsp1_rep	three_prime_UTR	21262634	21262812	.	+	.	Parent=Os04t0429100-01
Chr04	irgsp1_rep	mRNA	21264024	21268224	.	+	.	ID=Os04t0429200-01;Name=Os04t0429200-01;Locus_id=Os04g0429200;CGSNL Gene Symbol=UBP12;CGSNL Gene Name=UBIQUITIN-SPECIFIC PROCESSING PROTEASE 12;Oryzabase Gene Symbol Synonym(s)=OsUBP12%2C OsUBP27%2C UBP27;Oryzabase Gene Name Synonym(s)=ubiquitin-specific processing protease 12%2C Ubiquitin-specific protease 27;Note=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 family protein.;Transcript_evidence=AK070730 (DDBJ%2C Best hit);ORF_evidence=Q01LG4 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Molecular Function: ubiquitin thiolesterase activity (GO:0004221);InterPro=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (IPR001394),Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2%2C conserved site (IPR018200);NIAS_FLcDNA=J023063K10;Oryzabase=22896;Expression=AK070730;TENOR=Os04t0429200-01;KEGG=Os04t0429200-01 (EC:3.1.2.15)
Chr04	irgsp1_rep	five_prime_UTR	21264024	21264129	.	+	.	Parent=Os04t0429200-01
Chr04	irgsp1_rep	five_prime_UTR	21264597	21264735	.	+	.	Parent=Os04t0429200-01
Chr04	irgsp1_rep	CDS	21264736	21264975	.	+	0	Parent=Os04t0429200-01
Chr04	irgsp1_rep	CDS	21265084	21265281	.	+	0	Parent=Os04t0429200-01
Chr04	irgsp1_rep	three_prime_UTR	21265282	21265864	.	+	.	Parent=Os04t0429200-01
Chr04	irgsp1_rep	three_prime_UTR	21265956	21266185	.	+	.	Parent=Os04t0429200-01
Chr04	irgsp1_rep	three_prime_UTR	21266515	21266583	.	+	.	Parent=Os04t0429200-01
Chr04	irgsp1_rep	three_prime_UTR	21266705	21266836	.	+	.	Parent=Os04t0429200-01
Chr04	irgsp1_rep	three_prime_UTR	21266915	21267049	.	+	.	Parent=Os04t0429200-01
Chr04	irgsp1_rep	three_prime_UTR	21267134	21267196	.	+	.	Parent=Os04t0429200-01
Chr04	irgsp1_rep	three_prime_UTR	21267281	21267523	.	+	.	Parent=Os04t0429200-01
Chr04	irgsp1_rep	three_prime_UTR	21267660	21268224	.	+	.	Parent=Os04t0429200-01
Chr04	irgsp1_rep	mRNA	21271609	21274073	.	+	.	ID=Os04t0429300-01;Name=Os04t0429300-01;Locus_id=Os04g0429300;Oryzabase Gene Symbol Synonym(s)=OsbHLH145;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 145;Note=Similar to OSIGBa0093L02.4 protein.;Transcript_evidence=AK107268 (DDBJ%2C Best hit);ORF_evidence=Q01LG3 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=002-125-H08;Oryzabase=15421;TENOR=Os04t0429300-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	21271609	21271968	.	+	.	Parent=Os04t0429300-01
Chr04	irgsp1_rep	CDS	21271969	21272058	.	+	0	Parent=Os04t0429300-01
Chr04	irgsp1_rep	CDS	21273007	21273546	.	+	0	Parent=Os04t0429300-01
Chr04	irgsp1_rep	CDS	21273696	21273791	.	+	0	Parent=Os04t0429300-01
Chr04	irgsp1_rep	three_prime_UTR	21273792	21274073	.	+	.	Parent=Os04t0429300-01
Chr04	irgsp1_rep	mRNA	21276704	21279864	.	+	.	ID=Os04t0429400-01;Name=Os04t0429400-01;Locus_id=Os04g0429400;Oryzabase Gene Symbol Synonym(s)=OsbHLH144%2C OsEnS-65%2C bHLH144%2C EnS-65%2C OsZOU-1%2C OsZOU1%2C ZOU-1%2C ZOU1;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 144%2C endosperm-specific gene 65%2C ZHOUPI 1;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=AK108728 (DDBJ%2C Best hit);ORF_evidence=Q01LG2 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=002-150-C12;Oryzabase=15420;Expression=AK108728;TENOR=Os04t0429400-01;KEGG=Os04t0429400-01
Chr04	irgsp1_rep	five_prime_UTR	21276704	21276803	.	+	.	Parent=Os04t0429400-01
Chr04	irgsp1_rep	CDS	21276804	21277223	.	+	0	Parent=Os04t0429400-01
Chr04	irgsp1_rep	CDS	21278661	21279146	.	+	0	Parent=Os04t0429400-01
Chr04	irgsp1_rep	CDS	21279510	21279605	.	+	0	Parent=Os04t0429400-01
Chr04	irgsp1_rep	three_prime_UTR	21279606	21279864	.	+	.	Parent=Os04t0429400-01
Chr04	irgsp1_rep	mRNA	21279804	21281662	.	-	.	ID=Os04t0429450-01;Name=Os04t0429450-01;Locus_id=Os04g0429450;Note=Conserved hypothetical protein.;Transcript_evidence=AK241424 (DDBJ%2C Best hit);ORF_evidence=B8ATT0 (UniProt);NIAS_FLcDNA=J065161L02;TENOR=Os04t0429450-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	21280351	21281662	.	-	.	Parent=Os04t0429450-01
Chr04	irgsp1_rep	CDS	21279928	21280350	.	-	0	Parent=Os04t0429450-01
Chr04	irgsp1_rep	three_prime_UTR	21279804	21279927	.	-	.	Parent=Os04t0429450-01
Chr04	irgsp1_rep	mRNA	21281751	21283878	.	-	.	ID=Os04t0429500-00;Name=Os04t0429500-00;Locus_id=Os04g0429500;CGSNL Gene Symbol=CSLH2;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE H2;Oryzabase Gene Symbol Synonym(s)=OsCslH2%2C OsCSLH2;Note=Similar to Cellulose synthase-like protein H2.;Transcript_evidence=AK332242 (DDBJ);ORF_evidence=Q7XUT9 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150);Oryzabase=13908;TENOR=Os04t0429500-00;KEGG=Os04t0429500-00
Chr04	irgsp1_rep	CDS	21283600	21283878	.	-	0	Parent=Os04t0429500-00
Chr04	irgsp1_rep	CDS	21283149	21283275	.	-	0	Parent=Os04t0429500-00
Chr04	irgsp1_rep	CDS	21282874	21283055	.	-	2	Parent=Os04t0429500-00
Chr04	irgsp1_rep	CDS	21282424	21282774	.	-	0	Parent=Os04t0429500-00
Chr04	irgsp1_rep	CDS	21281751	21282311	.	-	0	Parent=Os04t0429500-00
Chr04	irgsp1_rep	mRNA	21288252	21293643	.	-	.	ID=Os04t0429600-00;Name=Os04t0429600-00;Locus_id=Os04g0429600;CGSNL Gene Symbol=CSLH3;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE H3;Oryzabase Gene Symbol Synonym(s)=OsCslH3%2C OsCSLH3;Note=Putative cellulose synthase-like protein H3.;Transcript_evidence=Q7XUU0 (UniProt);ORF_evidence=Q7XUU0 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150);Oryzabase=18111;TENOR=Os04t0429600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	21292924	21293643	.	-	0	Parent=Os04t0429600-00
Chr04	irgsp1_rep	CDS	21291086	21291211	.	-	0	Parent=Os04t0429600-00
Chr04	irgsp1_rep	CDS	21290850	21290978	.	-	0	Parent=Os04t0429600-00
Chr04	irgsp1_rep	CDS	21290503	21290715	.	-	0	Parent=Os04t0429600-00
Chr04	irgsp1_rep	CDS	21289720	21289816	.	-	0	Parent=Os04t0429600-00
Chr04	irgsp1_rep	CDS	21289425	21289609	.	-	2	Parent=Os04t0429600-00
Chr04	irgsp1_rep	CDS	21288976	21289326	.	-	0	Parent=Os04t0429600-00
Chr04	irgsp1_rep	CDS	21288252	21288809	.	-	0	Parent=Os04t0429600-00
Chr04	irgsp1_rep	mRNA	21310430	21318190	.	+	.	ID=Os04t0429800-01;Name=Os04t0429800-01;Locus_id=Os04g0429800;CGSNL Gene Symbol=NaPRT2;CGSNL Gene Name=NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2;Oryzabase Gene Symbol Synonym(s)=OsNaPRT2;Oryzabase Gene Name Synonym(s)=Nicotinate Phosphoribosyltransferase 2%2C NaPRTase 2;Note=Similar to Nicotinate phosphoribosyltransferase-like protein.;Transcript_evidence=AK067438 (DDBJ%2C Best hit),AK099191 (DDBJ%2C Best hit),AK119236 (DDBJ%2C Best hit);ORF_evidence=B6UET1 (UniProt);GO=Biological Process: NAD biosynthetic process (GO:0009435),Biological Process: nicotinate nucleotide salvage (GO:0019358),Biological Process: pyridine nucleotide biosynthetic process (GO:0019363),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nicotinate-nucleotide diphosphorylase (carboxylating) activity (GO:0004514),Molecular Function: nicotinate phosphoribosyltransferase activity (GO:0004516);InterPro=Quinolinate phosphoribosyl transferase%2C C-terminal (IPR002638),Nicotinate phosphoribosyltransferase putative (IPR006405),Nicotinate phosphoribosyltransferase-related (IPR007229),Nicotinate phosphoribosyltransferase-like (IPR015977);NIAS_FLcDNA=J013103F09,J023110O20,001-116-D09;Oryzabase=21095;TENOR=Os04t0429800-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	21310430	21310617	.	+	.	Parent=Os04t0429800-01
Chr04	irgsp1_rep	CDS	21310618	21310784	.	+	0	Parent=Os04t0429800-01
Chr04	irgsp1_rep	CDS	21313321	21313465	.	+	1	Parent=Os04t0429800-01
Chr04	irgsp1_rep	CDS	21313689	21313808	.	+	0	Parent=Os04t0429800-01
Chr04	irgsp1_rep	CDS	21313905	21314039	.	+	0	Parent=Os04t0429800-01
Chr04	irgsp1_rep	CDS	21314147	21314208	.	+	0	Parent=Os04t0429800-01
Chr04	irgsp1_rep	CDS	21314449	21314524	.	+	1	Parent=Os04t0429800-01
Chr04	irgsp1_rep	CDS	21315200	21315301	.	+	0	Parent=Os04t0429800-01
Chr04	irgsp1_rep	CDS	21315376	21315492	.	+	0	Parent=Os04t0429800-01
Chr04	irgsp1_rep	CDS	21316047	21316105	.	+	0	Parent=Os04t0429800-01
Chr04	irgsp1_rep	CDS	21316571	21316745	.	+	1	Parent=Os04t0429800-01
Chr04	irgsp1_rep	CDS	21316877	21317011	.	+	0	Parent=Os04t0429800-01
Chr04	irgsp1_rep	CDS	21317091	21317189	.	+	0	Parent=Os04t0429800-01
Chr04	irgsp1_rep	CDS	21317330	21317438	.	+	0	Parent=Os04t0429800-01
Chr04	irgsp1_rep	CDS	21317583	21317695	.	+	2	Parent=Os04t0429800-01
Chr04	irgsp1_rep	CDS	21317778	21317855	.	+	0	Parent=Os04t0429800-01
Chr04	irgsp1_rep	three_prime_UTR	21317856	21318190	.	+	.	Parent=Os04t0429800-01
Chr04	irgsp1_rep	mRNA	21310467	21318045	.	-	.	ID=Os04t0429850-00;Name=Os04t0429850-00;Locus_id=Os04g0429850;Note=Hypothetical protein.;Transcript_evidence=tplb0058g16 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0429850-00
Chr04	irgsp1_rep	five_prime_UTR	21317769	21318045	.	-	.	Parent=Os04t0429850-00
Chr04	irgsp1_rep	five_prime_UTR	21317560	21317687	.	-	.	Parent=Os04t0429850-00
Chr04	irgsp1_rep	five_prime_UTR	21317340	21317421	.	-	.	Parent=Os04t0429850-00
Chr04	irgsp1_rep	five_prime_UTR	21317091	21317193	.	-	.	Parent=Os04t0429850-00
Chr04	irgsp1_rep	five_prime_UTR	21316874	21317011	.	-	.	Parent=Os04t0429850-00
Chr04	irgsp1_rep	five_prime_UTR	21316570	21316742	.	-	.	Parent=Os04t0429850-00
Chr04	irgsp1_rep	five_prime_UTR	21316047	21316104	.	-	.	Parent=Os04t0429850-00
Chr04	irgsp1_rep	five_prime_UTR	21315359	21315492	.	-	.	Parent=Os04t0429850-00
Chr04	irgsp1_rep	five_prime_UTR	21315192	21315286	.	-	.	Parent=Os04t0429850-00
Chr04	irgsp1_rep	five_prime_UTR	21314446	21314514	.	-	.	Parent=Os04t0429850-00
Chr04	irgsp1_rep	five_prime_UTR	21314156	21314205	.	-	.	Parent=Os04t0429850-00
Chr04	irgsp1_rep	five_prime_UTR	21313918	21314046	.	-	.	Parent=Os04t0429850-00
Chr04	irgsp1_rep	five_prime_UTR	21313687	21313823	.	-	.	Parent=Os04t0429850-00
Chr04	irgsp1_rep	five_prime_UTR	21313453	21313463	.	-	.	Parent=Os04t0429850-00
Chr04	irgsp1_rep	CDS	21313334	21313452	.	-	0	Parent=Os04t0429850-00
Chr04	irgsp1_rep	CDS	21310588	21310795	.	-	1	Parent=Os04t0429850-00
Chr04	irgsp1_rep	three_prime_UTR	21310467	21310587	.	-	.	Parent=Os04t0429850-00
Chr04	irgsp1_rep	mRNA	21319691	21320542	.	+	.	ID=Os04t0429900-01;Name=Os04t0429900-01;Locus_id=Os04g0429900;Note=Conserved hypothetical protein.;Transcript_evidence=AK063076 (DDBJ%2C Best hit);ORF_evidence=Q7XT85 (UniProt);NIAS_FLcDNA=001-110-H09;TENOR=Os04t0429900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	21319691	21320116	.	+	.	Parent=Os04t0429900-01
Chr04	irgsp1_rep	CDS	21320117	21320326	.	+	0	Parent=Os04t0429900-01
Chr04	irgsp1_rep	three_prime_UTR	21320327	21320542	.	+	.	Parent=Os04t0429900-01
Chr04	irgsp1_rep	mRNA	21324278	21326956	.	+	.	ID=Os04t0430000-01;Name=Os04t0430000-01;Locus_id=Os04g0430000;CGSNL Gene Symbol=RLCK151;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 151;Oryzabase Gene Symbol Synonym(s)=OsRLCK151;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 151;Note=Similar to Ser Thr specific protein kinase-like protein.;Transcript_evidence=AK100142 (DDBJ%2C Best hit);ORF_evidence=NP_001167697.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023011I08;Oryzabase=18854;Expression=AK100142;TENOR=Os04t0430000-01;KEGG=Os04t0430000-01
Chr04	irgsp1_rep	CDS	21324278	21324318	.	+	0	Parent=Os04t0430000-01
Chr04	irgsp1_rep	CDS	21324734	21324838	.	+	1	Parent=Os04t0430000-01
Chr04	irgsp1_rep	CDS	21324913	21325035	.	+	1	Parent=Os04t0430000-01
Chr04	irgsp1_rep	CDS	21325102	21325272	.	+	1	Parent=Os04t0430000-01
Chr04	irgsp1_rep	CDS	21325354	21325483	.	+	1	Parent=Os04t0430000-01
Chr04	irgsp1_rep	CDS	21325570	21325779	.	+	0	Parent=Os04t0430000-01
Chr04	irgsp1_rep	CDS	21326344	21326499	.	+	0	Parent=Os04t0430000-01
Chr04	irgsp1_rep	three_prime_UTR	21326500	21326956	.	+	.	Parent=Os04t0430000-01
Chr04	irgsp1_rep	mRNA	21329624	21332186	.	+	.	ID=Os04t0430100-01;Name=Os04t0430100-01;Locus_id=Os04g0430100;Note=Similar to 40S ribosomal protein S10-1.;Transcript_evidence=AK102190 (DDBJ%2C Best hit);ORF_evidence=Q9AYP4 (UniProt);InterPro=Plectin/S10%2C N-terminal (IPR005326);NIAS_FLcDNA=J033087A06;Expression=AK102190;TENOR=Os04t0430100-01;KEGG=Os04t0430100-01
Chr04	irgsp1_rep	five_prime_UTR	21329624	21329715	.	+	.	Parent=Os04t0430100-01
Chr04	irgsp1_rep	CDS	21329716	21329718	.	+	0	Parent=Os04t0430100-01
Chr04	irgsp1_rep	CDS	21329836	21329884	.	+	0	Parent=Os04t0430100-01
Chr04	irgsp1_rep	CDS	21330332	21330614	.	+	2	Parent=Os04t0430100-01
Chr04	irgsp1_rep	CDS	21331214	21331349	.	+	1	Parent=Os04t0430100-01
Chr04	irgsp1_rep	CDS	21331851	21331931	.	+	0	Parent=Os04t0430100-01
Chr04	irgsp1_rep	three_prime_UTR	21331932	21332186	.	+	.	Parent=Os04t0430100-01
Chr04	irgsp1_rep	mRNA	21329835	21332158	.	-	.	ID=Os04t0430150-00;Name=Os04t0430150-00;Locus_id=Os04g0430150;Note=Hypothetical gene.;Transcript_evidence=BT019280 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0430150-00;KEGG=Os04t0430150-00
Chr04	irgsp1_rep	five_prime_UTR	21331839	21332158	.	-	.	Parent=Os04t0430150-00
Chr04	irgsp1_rep	CDS	21331836	21331838	.	-	0	Parent=Os04t0430150-00
Chr04	irgsp1_rep	CDS	21331239	21331342	.	-	0	Parent=Os04t0430150-00
Chr04	irgsp1_rep	CDS	21330331	21330634	.	-	1	Parent=Os04t0430150-00
Chr04	irgsp1_rep	CDS	21329837	21329884	.	-	0	Parent=Os04t0430150-00
Chr04	irgsp1_rep	three_prime_UTR	21329835	21329836	.	-	.	Parent=Os04t0430150-00
Chr04	irgsp1_rep	mRNA	21332222	21335533	.	-	.	ID=Os04t0430200-01;Name=Os04t0430200-01;Locus_id=Os04g0430200;Note=PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain domain containing protein.;Transcript_evidence=AK070740 (DDBJ%2C Best hit);ORF_evidence=NP_001150982.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: intracellular signal transduction (GO:0035556),Molecular Function: phospholipase C activity (GO:0004629),Molecular Function: phosphoric diester hydrolase activity (GO:0008081);InterPro=Phospholipase C%2C phosphatidylinositol-specific %2C X domain (IPR000909),PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain (IPR017946);NIAS_FLcDNA=J023063N02;Expression=AK070740;TENOR=Os04t0430200-01;KEGG=Os04t0430200-01
Chr04	irgsp1_rep	five_prime_UTR	21335366	21335533	.	-	.	Parent=Os04t0430200-01
Chr04	irgsp1_rep	CDS	21335267	21335365	.	-	0	Parent=Os04t0430200-01
Chr04	irgsp1_rep	CDS	21335056	21335178	.	-	0	Parent=Os04t0430200-01
Chr04	irgsp1_rep	CDS	21334821	21334958	.	-	0	Parent=Os04t0430200-01
Chr04	irgsp1_rep	CDS	21333985	21334083	.	-	0	Parent=Os04t0430200-01
Chr04	irgsp1_rep	CDS	21333580	21333883	.	-	0	Parent=Os04t0430200-01
Chr04	irgsp1_rep	CDS	21332961	21333184	.	-	2	Parent=Os04t0430200-01
Chr04	irgsp1_rep	CDS	21332780	21332866	.	-	0	Parent=Os04t0430200-01
Chr04	irgsp1_rep	CDS	21332473	21332640	.	-	0	Parent=Os04t0430200-01
Chr04	irgsp1_rep	three_prime_UTR	21332222	21332472	.	-	.	Parent=Os04t0430200-01
Chr04	irgsp1_rep	mRNA	21332241	21332628	.	-	.	ID=Os04t0430200-02;Name=Os04t0430200-02;Locus_id=Os04g0430200;Note=Similar to phospholipase C.;Transcript_evidence=AK104956 (DDBJ%2C Best hit);ORF_evidence=NP_001150982.1 (RefSeq);NIAS_FLcDNA=001-112-B06;Expression=AK104956;TENOR=Os04t0430200-02;KEGG=Os04t0430200-02
Chr04	irgsp1_rep	CDS	21332473	21332628	.	-	0	Parent=Os04t0430200-02
Chr04	irgsp1_rep	three_prime_UTR	21332241	21332472	.	-	.	Parent=Os04t0430200-02
Chr04	irgsp1_rep	mRNA	21340765	21344572	.	+	.	ID=Os04t0430400-01;Name=Os04t0430400-01;Locus_id=Os04g0430400;Note=Hypothetical conserved gene.;Transcript_evidence=AK064161 (DDBJ%2C Best hit);ORF_evidence=B9FF85 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=002-103-G03;Expression=AK064161;TENOR=Os04t0430400-01;KEGG=Os04t0430400-01
Chr04	irgsp1_rep	CDS	21340765	21341002	.	+	0	Parent=Os04t0430400-01
Chr04	irgsp1_rep	CDS	21341781	21342068	.	+	2	Parent=Os04t0430400-01
Chr04	irgsp1_rep	CDS	21342424	21342685	.	+	2	Parent=Os04t0430400-01
Chr04	irgsp1_rep	CDS	21342755	21342807	.	+	1	Parent=Os04t0430400-01
Chr04	irgsp1_rep	CDS	21342895	21342962	.	+	2	Parent=Os04t0430400-01
Chr04	irgsp1_rep	CDS	21343181	21343270	.	+	0	Parent=Os04t0430400-01
Chr04	irgsp1_rep	CDS	21343392	21343482	.	+	0	Parent=Os04t0430400-01
Chr04	irgsp1_rep	CDS	21343866	21344464	.	+	2	Parent=Os04t0430400-01
Chr04	irgsp1_rep	three_prime_UTR	21344465	21344572	.	+	.	Parent=Os04t0430400-01
Chr04	irgsp1_rep	mRNA	21350888	21353253	.	+	.	ID=Os04t0430600-01;Name=Os04t0430600-01;Locus_id=Os04g0430600;Note=Similar to OSIGBa0160I14.1 protein.;Transcript_evidence=AK106337 (DDBJ%2C Best hit),AK072050 (DDBJ%2C Best hit);ORF_evidence=Q01JS2 (UniProt);NIAS_FLcDNA=002-101-G03,J013110C07;TENOR=Os04t0430600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	21350888	21351000	.	+	.	Parent=Os04t0430600-01
Chr04	irgsp1_rep	CDS	21351001	21351537	.	+	0	Parent=Os04t0430600-01
Chr04	irgsp1_rep	CDS	21351636	21351821	.	+	0	Parent=Os04t0430600-01
Chr04	irgsp1_rep	CDS	21352706	21352996	.	+	0	Parent=Os04t0430600-01
Chr04	irgsp1_rep	three_prime_UTR	21352997	21353253	.	+	.	Parent=Os04t0430600-01
Chr04	irgsp1_rep	mRNA	21358943	21361513	.	+	.	ID=Os04t0430700-01;Name=Os04t0430700-01;Locus_id=Os04g0430700;Oryzabase Gene Symbol Synonym(s)=OsSub41%2C SUB41;Oryzabase Gene Name Synonym(s)=Subtilisin 41%2C SUBTILISIN 41;Note=Peptidase S8%2C subtilisin-related domain containing protein.;Transcript_evidence=AK105112 (DDBJ%2C Best hit);ORF_evidence=Q01JS1 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);NIAS_FLcDNA=001-100-G01;Oryzabase=20127;Expression=AK105112;TENOR=Os04t0430700-01;KEGG=Os04t0430700-01
Chr04	irgsp1_rep	five_prime_UTR	21358943	21358953	.	+	.	Parent=Os04t0430700-01
Chr04	irgsp1_rep	CDS	21358954	21361287	.	+	0	Parent=Os04t0430700-01
Chr04	irgsp1_rep	three_prime_UTR	21361288	21361513	.	+	.	Parent=Os04t0430700-01
Chr04	irgsp1_rep	mRNA	21361483	21365478	.	-	.	ID=Os04t0430800-01;Name=Os04t0430800-01;Locus_id=Os04g0430800;Note=Similar to OSIGBa0160I14.3 protein.;Transcript_evidence=AK288574 (DDBJ%2C Best hit);ORF_evidence=Q01JS0 (UniProt);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Thioredoxin (IPR005746),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766),Thioredoxin%2C conserved site (IPR017937);NIAS_FLcDNA=J090049A06;TENOR=Os04t0430800-01;KEGG=Os04t0430800-01
Chr04	irgsp1_rep	five_prime_UTR	21365388	21365478	.	-	.	Parent=Os04t0430800-01
Chr04	irgsp1_rep	CDS	21365189	21365387	.	-	0	Parent=Os04t0430800-01
Chr04	irgsp1_rep	CDS	21363971	21364299	.	-	2	Parent=Os04t0430800-01
Chr04	irgsp1_rep	three_prime_UTR	21363859	21363970	.	-	.	Parent=Os04t0430800-01
Chr04	irgsp1_rep	three_prime_UTR	21363398	21363467	.	-	.	Parent=Os04t0430800-01
Chr04	irgsp1_rep	three_prime_UTR	21362183	21363051	.	-	.	Parent=Os04t0430800-01
Chr04	irgsp1_rep	three_prime_UTR	21361483	21362101	.	-	.	Parent=Os04t0430800-01
Chr04	irgsp1_rep	mRNA	21363616	21365344	.	-	.	ID=Os04t0430800-02;Name=Os04t0430800-02;Locus_id=Os04g0430800;Note=Similar to OSIGBa0160I14.3 protein.;Transcript_evidence=AK287766 (DDBJ%2C Best hit);ORF_evidence=Q01JS0 (UniProt);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Thioredoxin (IPR005746),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766),Thioredoxin%2C conserved site (IPR017937);NIAS_FLcDNA=J065164N15;TENOR=Os04t0430800-02;KEGG=Os04t0430800-02
Chr04	irgsp1_rep	five_prime_UTR	21365343	21365344	.	-	.	Parent=Os04t0430800-02
Chr04	irgsp1_rep	CDS	21365189	21365342	.	-	0	Parent=Os04t0430800-02
Chr04	irgsp1_rep	CDS	21363971	21364299	.	-	2	Parent=Os04t0430800-02
Chr04	irgsp1_rep	three_prime_UTR	21363616	21363970	.	-	.	Parent=Os04t0430800-02
Chr04	irgsp1_rep	mRNA	21368550	21371720	.	+	.	ID=Os04t0430900-00;Name=Os04t0430900-00;Locus_id=Os04g0430900;Oryzabase Gene Symbol Synonym(s)=OsMRS2-8;Oryzabase Gene Name Synonym(s)=MRS2/MGT family member 8;Note=Magnesium transporter MRS2-F.;Transcript_evidence=Q7XQQ1 (UniProt);ORF_evidence=Q8L4S2 (UniProt);Oryzabase=14379;TENOR=Os04t0430900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	21368550	21368942	.	+	0	Parent=Os04t0430900-00
Chr04	irgsp1_rep	CDS	21369052	21369234	.	+	0	Parent=Os04t0430900-00
Chr04	irgsp1_rep	CDS	21370116	21370244	.	+	0	Parent=Os04t0430900-00
Chr04	irgsp1_rep	CDS	21370522	21370652	.	+	0	Parent=Os04t0430900-00
Chr04	irgsp1_rep	CDS	21370764	21370923	.	+	1	Parent=Os04t0430900-00
Chr04	irgsp1_rep	CDS	21371436	21371720	.	+	0	Parent=Os04t0430900-00
Chr04	irgsp1_rep	mRNA	21373466	21376843	.	-	.	ID=Os04t0430950-00;Name=Os04t0430950-00;Locus_id=Os04g0430950;Note=Hypothetical protein.;Transcript_evidence=tplb0059h12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0430950-00
Chr04	irgsp1_rep	five_prime_UTR	21376768	21376843	.	-	.	Parent=Os04t0430950-00
Chr04	irgsp1_rep	five_prime_UTR	21375933	21376148	.	-	.	Parent=Os04t0430950-00
Chr04	irgsp1_rep	five_prime_UTR	21374017	21375418	.	-	.	Parent=Os04t0430950-00
Chr04	irgsp1_rep	CDS	21373466	21374016	.	-	0	Parent=Os04t0430950-00
Chr04	irgsp1_rep	mRNA	21374899	21377151	.	+	.	ID=Os04t0431000-01;Name=Os04t0431000-01;Locus_id=Os04g0431000;Note=Conserved hypothetical protein.;Transcript_evidence=AK111961 (DDBJ%2C Best hit);ORF_evidence=Q7XQQ0 (UniProt);NIAS_FLcDNA=001-031-D07;Expression=AK111961;TENOR=Os04t0431000-01;KEGG=Os04t0431000-01
Chr04	irgsp1_rep	CDS	21374899	21375410	.	+	0	Parent=Os04t0431000-01
Chr04	irgsp1_rep	CDS	21375952	21376111	.	+	1	Parent=Os04t0431000-01
Chr04	irgsp1_rep	CDS	21376322	21376370	.	+	0	Parent=Os04t0431000-01
Chr04	irgsp1_rep	CDS	21376770	21376822	.	+	2	Parent=Os04t0431000-01
Chr04	irgsp1_rep	three_prime_UTR	21376823	21377151	.	+	.	Parent=Os04t0431000-01
Chr04	irgsp1_rep	mRNA	21377338	21379536	.	-	.	ID=Os04t0431100-01;Name=Os04t0431100-01;Locus_id=Os04g0431100;Note=GrpE protein homolog.;Transcript_evidence=AK101973 (DDBJ%2C Best hit);ORF_evidence=A2XTK3 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: adenyl-nucleotide exchange factor activity (GO:0000774),Molecular Function: protein homodimerization activity (GO:0042803),Molecular Function: chaperone binding (GO:0051087);InterPro=GrpE nucleotide exchange factor (IPR000740),GrpE nucleotide exchange factor%2C head (IPR009012),GrpE nucleotide exchange factor%2C coiled-coil (IPR013805);NIAS_FLcDNA=J033076N12;Expression=AK101973;TENOR=Os04t0431100-01;KEGG=Os04t0431100-01
Chr04	irgsp1_rep	five_prime_UTR	21379440	21379536	.	-	.	Parent=Os04t0431100-01
Chr04	irgsp1_rep	CDS	21379233	21379439	.	-	0	Parent=Os04t0431100-01
Chr04	irgsp1_rep	CDS	21377983	21378444	.	-	0	Parent=Os04t0431100-01
Chr04	irgsp1_rep	CDS	21377547	21377750	.	-	0	Parent=Os04t0431100-01
Chr04	irgsp1_rep	three_prime_UTR	21377338	21377546	.	-	.	Parent=Os04t0431100-01
Chr04	irgsp1_rep	mRNA	21377338	21377712	.	-	.	ID=Os04t0431100-02;Name=Os04t0431100-02;Locus_id=Os04g0431100;Note=Similar to GrpE protein homolog.;Transcript_evidence=AK105181 (DDBJ%2C Best hit);ORF_evidence=A2XTK3 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: adenyl-nucleotide exchange factor activity (GO:0000774),Molecular Function: protein homodimerization activity (GO:0042803),Molecular Function: chaperone binding (GO:0051087);InterPro=GrpE nucleotide exchange factor (IPR000740),GrpE nucleotide exchange factor%2C head (IPR009012);NIAS_FLcDNA=001-105-G08;Expression=AK105181;TENOR=Os04t0431100-02;KEGG=Os04t0431100-02
Chr04	irgsp1_rep	five_prime_UTR	21377712	21377712	.	-	.	Parent=Os04t0431100-02
Chr04	irgsp1_rep	CDS	21377547	21377711	.	-	0	Parent=Os04t0431100-02
Chr04	irgsp1_rep	three_prime_UTR	21377338	21377546	.	-	.	Parent=Os04t0431100-02
Chr04	irgsp1_rep	mRNA	21380985	21385639	.	+	.	ID=Os04t0431200-01;Name=Os04t0431200-01;Locus_id=Os04g0431200;Oryzabase Gene Symbol Synonym(s)=OsDRF1%2C OsFbox209%2C Os_F0001;Oryzabase Gene Name Synonym(s)=defense-related F-box protein 1%2C F-box protein 209;Note=Similar to OSIGBa0160I14.7 protein.;Transcript_evidence=AK064823 (DDBJ%2C Best hit);ORF_evidence=Q01JR6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013000F02;Oryzabase=11067;Expression=AK064823;TENOR=Os04t0431200-01;KEGG=Os04t0431200-01
Chr04	irgsp1_rep	five_prime_UTR	21380985	21381109	.	+	.	Parent=Os04t0431200-01
Chr04	irgsp1_rep	CDS	21381110	21381122	.	+	0	Parent=Os04t0431200-01
Chr04	irgsp1_rep	CDS	21381706	21381792	.	+	2	Parent=Os04t0431200-01
Chr04	irgsp1_rep	CDS	21381906	21382012	.	+	2	Parent=Os04t0431200-01
Chr04	irgsp1_rep	CDS	21382305	21382421	.	+	0	Parent=Os04t0431200-01
Chr04	irgsp1_rep	CDS	21382498	21382623	.	+	0	Parent=Os04t0431200-01
Chr04	irgsp1_rep	three_prime_UTR	21382624	21384244	.	+	.	Parent=Os04t0431200-01
Chr04	irgsp1_rep	three_prime_UTR	21384438	21384491	.	+	.	Parent=Os04t0431200-01
Chr04	irgsp1_rep	three_prime_UTR	21384579	21384683	.	+	.	Parent=Os04t0431200-01
Chr04	irgsp1_rep	three_prime_UTR	21384779	21384837	.	+	.	Parent=Os04t0431200-01
Chr04	irgsp1_rep	three_prime_UTR	21384926	21385136	.	+	.	Parent=Os04t0431200-01
Chr04	irgsp1_rep	three_prime_UTR	21385293	21385639	.	+	.	Parent=Os04t0431200-01
Chr04	irgsp1_rep	mRNA	21385573	21387573	.	-	.	ID=Os04t0431300-01;Name=Os04t0431300-01;Locus_id=Os04g0431300;Note=Acyl-CoA N-acyltransferase domain containing protein.;Transcript_evidence=AK063893 (DDBJ%2C Best hit);ORF_evidence=NP_565157.1 (RefSeq);InterPro=Acyl-CoA N-acyltransferase (IPR016181);NIAS_FLcDNA=001-122-G08;Expression=AK063893;TENOR=Os04t0431300-01;KEGG=Os04t0431300-01
Chr04	irgsp1_rep	five_prime_UTR	21387565	21387573	.	-	.	Parent=Os04t0431300-01
Chr04	irgsp1_rep	CDS	21387504	21387564	.	-	0	Parent=Os04t0431300-01
Chr04	irgsp1_rep	CDS	21387210	21387361	.	-	2	Parent=Os04t0431300-01
Chr04	irgsp1_rep	CDS	21385945	21386022	.	-	0	Parent=Os04t0431300-01
Chr04	irgsp1_rep	three_prime_UTR	21385573	21385944	.	-	.	Parent=Os04t0431300-01
Chr04	irgsp1_rep	mRNA	21396879	21401829	.	+	.	ID=Os04t0431700-01;Name=Os04t0431700-01;Locus_id=Os04g0431700;RAP-DB Gene Symbol Synonym(s)=Bph6;RAP-DB Gene Name Synonym(s)=brown planthopper resistance 6;CGSNL Gene Symbol=BPH6;CGSNL Gene Name=BROWN PLANTHOPPER RESISTANCE 6;Oryzabase Gene Symbol Synonym(s)=Bph6;Oryzabase Gene Name Synonym(s)=brown planthopper resistance 6%2C Brown planthopper resistance-6;Note=Exocyst-localized protein%2C Resistance to planthoppers%2C (Nipponbare: BPH-susceptible);Transcript_evidence=AK243005;ORF_evidence=A0A0P0WAN7;InterPro=Leucine-rich repeat domain superfamily (IPR032675);NIAS_FLcDNA=J090096I12;Manual Curation=February 22%2C 2018;Literature_PMID=29358653;Oryzabase=39;TENOR=Os04t0431700-01;KEGG=Os04t0431700-01;Subcellular location=exocyst (GO:0000145)
Chr04	irgsp1_rep	five_prime_UTR	21396879	21397071	.	+	.	Parent=Os04t0431700-01
Chr04	irgsp1_rep	five_prime_UTR	21397269	21397356	.	+	.	Parent=Os04t0431700-01
Chr04	irgsp1_rep	CDS	21397357	21397368	.	+	0	Parent=Os04t0431700-01
Chr04	irgsp1_rep	CDS	21398247	21401149	.	+	0	Parent=Os04t0431700-01
Chr04	irgsp1_rep	CDS	21401300	21401303	.	+	1	Parent=Os04t0431700-01
Chr04	irgsp1_rep	three_prime_UTR	21401304	21401829	.	+	.	Parent=Os04t0431700-01
Chr04	irgsp1_rep	mRNA	21402615	21405379	.	-	.	ID=Os04t0431800-01;Name=Os04t0431800-01;Locus_id=Os04g0431800;Note=Conserved hypothetical protein.;Transcript_evidence=AK068094 (DDBJ%2C Best hit);ORF_evidence=Q7XQP5 (UniProt);NIAS_FLcDNA=J013132B21;Expression=AK068094;TENOR=Os04t0431800-01;KEGG=Os04t0431800-01
Chr04	irgsp1_rep	five_prime_UTR	21405141	21405379	.	-	.	Parent=Os04t0431800-01
Chr04	irgsp1_rep	five_prime_UTR	21405006	21405042	.	-	.	Parent=Os04t0431800-01
Chr04	irgsp1_rep	CDS	21404889	21405005	.	-	0	Parent=Os04t0431800-01
Chr04	irgsp1_rep	CDS	21403345	21403455	.	-	0	Parent=Os04t0431800-01
Chr04	irgsp1_rep	CDS	21402726	21402971	.	-	0	Parent=Os04t0431800-01
Chr04	irgsp1_rep	three_prime_UTR	21402615	21402725	.	-	.	Parent=Os04t0431800-01
Chr04	irgsp1_rep	mRNA	21414495	21419953	.	+	.	ID=Os04t0432000-01;Name=Os04t0432000-01;Locus_id=Os04g0432000;CGSNL Gene Symbol=SAPK7;CGSNL Gene Name=STRESS/ABA-ACTIVATED PROTEIN KINASE 7;Oryzabase Gene Symbol Synonym(s)=OsSAPK7;Oryzabase Gene Name Synonym(s)=stress/ABA-activated protein kinase 7%2C Stress-Activated Protein Kinase 7;Note=Similar to Serine/threonine-protein kinase SAPK7.;Transcript_evidence=AK065036 (DDBJ%2C Best hit);ORF_evidence=Q7XQP4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013001H09;Oryzabase=9815;Expression=AK065036;TENOR=Os04t0432000-01;KEGG=Os04t0432000-01 (EC:2.7.11.1)
Chr04	irgsp1_rep	five_prime_UTR	21414495	21414549	.	+	.	Parent=Os04t0432000-01
Chr04	irgsp1_rep	CDS	21414550	21414581	.	+	0	Parent=Os04t0432000-01
Chr04	irgsp1_rep	CDS	21415258	21415285	.	+	1	Parent=Os04t0432000-01
Chr04	irgsp1_rep	CDS	21415374	21415427	.	+	0	Parent=Os04t0432000-01
Chr04	irgsp1_rep	CDS	21415533	21415625	.	+	0	Parent=Os04t0432000-01
Chr04	irgsp1_rep	CDS	21416179	21416271	.	+	0	Parent=Os04t0432000-01
Chr04	irgsp1_rep	CDS	21418982	21419086	.	+	0	Parent=Os04t0432000-01
Chr04	irgsp1_rep	CDS	21419170	21419268	.	+	0	Parent=Os04t0432000-01
Chr04	irgsp1_rep	CDS	21419354	21419692	.	+	0	Parent=Os04t0432000-01
Chr04	irgsp1_rep	three_prime_UTR	21419693	21419953	.	+	.	Parent=Os04t0432000-01
Chr04	irgsp1_rep	mRNA	21414636	21419941	.	+	.	ID=Os04t0432000-02;Name=Os04t0432000-02;Locus_id=Os04g0432000;RAP-DB Gene Symbol Synonym(s)=SAPK7%2C OsSAPK7;RAP-DB Gene Name Synonym(s)=STRESS/ABA-ACTIVATED PROTEIN KINASE 7%2C stress/ABA-activated protein kinase 7%2C Stress-Activated Protein Kinase 7;CGSNL Gene Symbol=SAPK7;CGSNL Gene Name=STRESS/ABA-ACTIVATED PROTEIN KINASE 7;Oryzabase Gene Symbol Synonym(s)=OsSAPK7;Oryzabase Gene Name Synonym(s)=stress/ABA-activated protein kinase 7%2C Stress-Activated Protein Kinase 7;Note=Serine/threonine protein kinase%2C Hyperosmotic stress response;Transcript_evidence=AB125308,AK122087;ORF_evidence=Q7XQP4;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine/threonine/dual specificity protein kinase%2C catalytic  domain (IPR002290),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J033123E08;Manual Curation=December 15%2C 2015;Literature_PMID=15084714;Oryzabase=9815;Expression=AK122087;TENOR=Os04t0432000-02;KEGG=Os04t0432000-02 (EC:2.7.1.37, EC:2.7.11.11)
Chr04	irgsp1_rep	five_prime_UTR	21414636	21414738	.	+	.	Parent=Os04t0432000-02
Chr04	irgsp1_rep	CDS	21414739	21414856	.	+	0	Parent=Os04t0432000-02
Chr04	irgsp1_rep	CDS	21414981	21415057	.	+	2	Parent=Os04t0432000-02
Chr04	irgsp1_rep	CDS	21415184	21415285	.	+	0	Parent=Os04t0432000-02
Chr04	irgsp1_rep	CDS	21415374	21415427	.	+	0	Parent=Os04t0432000-02
Chr04	irgsp1_rep	CDS	21415533	21415625	.	+	0	Parent=Os04t0432000-02
Chr04	irgsp1_rep	CDS	21416179	21416271	.	+	0	Parent=Os04t0432000-02
Chr04	irgsp1_rep	CDS	21418982	21419086	.	+	0	Parent=Os04t0432000-02
Chr04	irgsp1_rep	CDS	21419170	21419268	.	+	0	Parent=Os04t0432000-02
Chr04	irgsp1_rep	CDS	21419354	21419692	.	+	0	Parent=Os04t0432000-02
Chr04	irgsp1_rep	three_prime_UTR	21419693	21419941	.	+	.	Parent=Os04t0432000-02
Chr04	irgsp1_rep	mRNA	21424187	21425721	.	-	.	ID=Os04t0432100-00;Name=Os04t0432100-00;Locus_id=Os04g0432100;CGSNL Gene Symbol=GRAS20;CGSNL Gene Name=GRAS PROTEIN 20;Oryzabase Gene Symbol Synonym(s)=OsGRAS-20%2C OsGRAS20%2C GRAS-20;Oryzabase Gene Name Synonym(s)=GRAS protein 20;Note=Transcription factor GRAS domain containing protein.;Transcript_evidence=BT018988 (DDBJ);ORF_evidence=Q7XQP2 (UniProt);InterPro=Transcription factor GRAS (IPR005202);Oryzabase=22788;TENOR=Os04t0432100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	21424207	21425721	.	-	0	Parent=Os04t0432100-00
Chr04	irgsp1_rep	three_prime_UTR	21424187	21424206	.	-	.	Parent=Os04t0432100-00
Chr04	irgsp1_rep	mRNA	21428227	21430913	.	-	.	ID=Os04t0432200-00;Name=Os04t0432200-00;Locus_id=Os04g0432200;Note=Hypothetical protein.;Transcript_evidence=CT837490 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os04t0432200-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	21430575	21430913	.	-	.	Parent=Os04t0432200-00
Chr04	irgsp1_rep	CDS	21430557	21430574	.	-	0	Parent=Os04t0432200-00
Chr04	irgsp1_rep	CDS	21430027	21430149	.	-	0	Parent=Os04t0432200-00
Chr04	irgsp1_rep	CDS	21429690	21429770	.	-	0	Parent=Os04t0432200-00
Chr04	irgsp1_rep	three_prime_UTR	21429683	21429689	.	-	.	Parent=Os04t0432200-00
Chr04	irgsp1_rep	three_prime_UTR	21429319	21429376	.	-	.	Parent=Os04t0432200-00
Chr04	irgsp1_rep	three_prime_UTR	21428227	21428824	.	-	.	Parent=Os04t0432200-00
Chr04	irgsp1_rep	mRNA	21443082	21445488	.	-	.	ID=Os04t0432250-00;Name=Os04t0432250-00;Locus_id=Os04g0432250;Note=Conserved hypothetical protein.;Transcript_evidence=FP091622 (DDBJ);ORF_evidence=Q7XQP1 (UniProt);TENOR=Os04t0432250-00
Chr04	irgsp1_rep	five_prime_UTR	21445423	21445488	.	-	.	Parent=Os04t0432250-00
Chr04	irgsp1_rep	CDS	21445024	21445422	.	-	0	Parent=Os04t0432250-00
Chr04	irgsp1_rep	three_prime_UTR	21444887	21445023	.	-	.	Parent=Os04t0432250-00
Chr04	irgsp1_rep	three_prime_UTR	21444199	21444398	.	-	.	Parent=Os04t0432250-00
Chr04	irgsp1_rep	three_prime_UTR	21443521	21443620	.	-	.	Parent=Os04t0432250-00
Chr04	irgsp1_rep	three_prime_UTR	21443082	21443381	.	-	.	Parent=Os04t0432250-00
Chr04	irgsp1_rep	mRNA	21447893	21449455	.	+	.	ID=Os04t0432300-00;Name=Os04t0432300-00;Locus_id=Os04g0432300;Note=Similar to 4-alpha-L-fucosyltransferase.;Transcript_evidence=AM162282 (DDBJ);ORF_evidence=Q2WBL8 (UniProt);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: fucosyltransferase activity (GO:0008417);InterPro=Glycosyl transferase%2C family 10 (IPR001503),Alpha-(1%2C 3)-fucosyltransferase/alpha-(1%2C 4)-fucosyltransferase%2C plant (IPR017177);TENOR=Os04t0432300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	21447893	21447895	.	+	.	Parent=Os04t0432300-00
Chr04	irgsp1_rep	CDS	21447896	21448507	.	+	0	Parent=Os04t0432300-00
Chr04	irgsp1_rep	CDS	21448592	21448765	.	+	0	Parent=Os04t0432300-00
Chr04	irgsp1_rep	CDS	21448871	21449455	.	+	0	Parent=Os04t0432300-00
Chr04	irgsp1_rep	mRNA	21451626	21456038	.	-	.	ID=Os04t0432400-01;Name=Os04t0432400-01;Locus_id=Os04g0432400;CGSNL Gene Symbol=NIN7;CGSNL Gene Name=NEUTRAL/ALKALINE INVERTASE 7;Oryzabase Gene Symbol Synonym(s)=OsNIN7;Oryzabase Gene Name Synonym(s)=neutral/alkaline invertase 7;Note=Plant neutral invertase family protein.;Transcript_evidence=AK065562 (DDBJ%2C Best hit);ORF_evidence=NP_001147920.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Plant neutral invertase (IPR006937),Six-hairpin glycosidase-like (IPR008928);NIAS_FLcDNA=J013030A21;Oryzabase=14672;Expression=AK065562;TENOR=Os04t0432400-01;KEGG=Os04t0432400-01
Chr04	irgsp1_rep	five_prime_UTR	21455841	21456038	.	-	.	Parent=Os04t0432400-01
Chr04	irgsp1_rep	CDS	21455412	21455840	.	-	0	Parent=Os04t0432400-01
Chr04	irgsp1_rep	CDS	21454411	21454845	.	-	0	Parent=Os04t0432400-01
Chr04	irgsp1_rep	CDS	21452589	21453150	.	-	0	Parent=Os04t0432400-01
Chr04	irgsp1_rep	CDS	21451824	21452122	.	-	2	Parent=Os04t0432400-01
Chr04	irgsp1_rep	three_prime_UTR	21451626	21451823	.	-	.	Parent=Os04t0432400-01
Chr04	irgsp1_rep	mRNA	21451563	21452966	.	-	.	ID=Os04t0432400-02;Name=Os04t0432400-02;Locus_id=Os04g0432400;CGSNL Gene Symbol=NIN7;CGSNL Gene Name=NEUTRAL/ALKALINE INVERTASE 7;Oryzabase Gene Symbol Synonym(s)=OsNIN7;Oryzabase Gene Name Synonym(s)=neutral/alkaline invertase 7;Note=Similar to neutral/alkaline invertase.;Transcript_evidence=AK061496 (DDBJ%2C Best hit);ORF_evidence=NP_001147920.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Plant neutral invertase (IPR006937),Six-hairpin glycosidase-like (IPR008928);NIAS_FLcDNA=006-309-D01;Oryzabase=14672;Expression=AK061496;TENOR=Os04t0432400-02;KEGG=Os04t0432400-02
Chr04	irgsp1_rep	five_prime_UTR	21452965	21452966	.	-	.	Parent=Os04t0432400-02
Chr04	irgsp1_rep	CDS	21452589	21452964	.	-	0	Parent=Os04t0432400-02
Chr04	irgsp1_rep	CDS	21451824	21452122	.	-	2	Parent=Os04t0432400-02
Chr04	irgsp1_rep	three_prime_UTR	21451563	21451823	.	-	.	Parent=Os04t0432400-02
Chr04	irgsp1_rep	mRNA	21462142	21465040	.	-	.	ID=Os04t0432500-01;Name=Os04t0432500-01;Locus_id=Os04g0432500;Oryzabase Gene Symbol Synonym(s)=PDIL5%3B2%2C OsPDIL5%3B2%2C PDIL5-2%2C OsPDIL5-2;Oryzabase Gene Name Synonym(s)=PROTEIN DISULFIDE ISOMERASE-LIKE 5%3B2%2C PROTEIN DISULFIDE ISOMERASE-LIKE 5-2%2C PDI-like protein 5-2;Note=Similar to Protein disulfide isomerase.;Transcript_evidence=AK069367 (DDBJ%2C Best hit);ORF_evidence=Q01JF2 (UniProt);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Thioredoxin (IPR005746),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766),Thioredoxin%2C conserved site (IPR017937);NIAS_FLcDNA=J023012O03;Oryzabase=11903;Expression=AK069367;TENOR=Os04t0432500-01;KEGG=Os04t0432500-01
Chr04	irgsp1_rep	five_prime_UTR	21464981	21465040	.	-	.	Parent=Os04t0432500-01
Chr04	irgsp1_rep	CDS	21464741	21464980	.	-	0	Parent=Os04t0432500-01
Chr04	irgsp1_rep	CDS	21463982	21464085	.	-	0	Parent=Os04t0432500-01
Chr04	irgsp1_rep	CDS	21463519	21463889	.	-	1	Parent=Os04t0432500-01
Chr04	irgsp1_rep	CDS	21462982	21463289	.	-	2	Parent=Os04t0432500-01
Chr04	irgsp1_rep	CDS	21462454	21462702	.	-	0	Parent=Os04t0432500-01
Chr04	irgsp1_rep	three_prime_UTR	21462142	21462453	.	-	.	Parent=Os04t0432500-01
Chr04	irgsp1_rep	mRNA	21462217	21463088	.	-	.	ID=Os04t0432500-02;Name=Os04t0432500-02;Locus_id=Os04g0432500;Oryzabase Gene Symbol Synonym(s)=PDIL5%3B2%2C OsPDIL5%3B2%2C PDIL5-2%2C OsPDIL5-2;Oryzabase Gene Name Synonym(s)=PROTEIN DISULFIDE ISOMERASE-LIKE 5%3B2%2C PROTEIN DISULFIDE ISOMERASE-LIKE 5-2%2C PDI-like protein 5-2;Note=Similar to H0315E07.1 protein.;Transcript_evidence=AK058722 (DDBJ%2C Best hit);ORF_evidence=Q01JF2 (UniProt);NIAS_FLcDNA=001-019-E10;Oryzabase=11903;Expression=AK058722;TENOR=Os04t0432500-02;KEGG=Os04t0432500-02
Chr04	irgsp1_rep	five_prime_UTR	21463087	21463088	.	-	.	Parent=Os04t0432500-02
Chr04	irgsp1_rep	CDS	21462982	21463086	.	-	0	Parent=Os04t0432500-02
Chr04	irgsp1_rep	CDS	21462454	21462702	.	-	0	Parent=Os04t0432500-02
Chr04	irgsp1_rep	three_prime_UTR	21462217	21462453	.	-	.	Parent=Os04t0432500-02
Chr04	irgsp1_rep	mRNA	21466501	21468612	.	-	.	ID=Os04t0432600-01;Name=Os04t0432600-01;Locus_id=Os04g0432600;Note=Similar to H0315E07.2 protein.;Transcript_evidence=AK058925 (DDBJ%2C Best hit),AK121724 (DDBJ%2C Best hit);ORF_evidence=Q01JF1 (UniProt);NIAS_FLcDNA=001-009-C02,J033081P13;Expression=AK058925;TENOR=Os04t0432600-01;KEGG=Os04t0432600-01
Chr04	irgsp1_rep	five_prime_UTR	21468510	21468612	.	-	.	Parent=Os04t0432600-01
Chr04	irgsp1_rep	CDS	21468428	21468509	.	-	0	Parent=Os04t0432600-01
Chr04	irgsp1_rep	CDS	21466802	21467016	.	-	2	Parent=Os04t0432600-01
Chr04	irgsp1_rep	three_prime_UTR	21466501	21466801	.	-	.	Parent=Os04t0432600-01
Chr04	irgsp1_rep	mRNA	21466586	21468570	.	-	.	ID=Os04t0432600-02;Name=Os04t0432600-02;Locus_id=Os04g0432600;Note=Similar to H0315E07.2 protein.;Transcript_evidence=AK103967 (DDBJ%2C Best hit);ORF_evidence=Q01JF1 (UniProt);NIAS_FLcDNA=001-016-A03;Expression=AK121724;TENOR=Os04t0432600-02;KEGG=Os04t0432600-02;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	21468510	21468570	.	-	.	Parent=Os04t0432600-02
Chr04	irgsp1_rep	CDS	21468428	21468509	.	-	0	Parent=Os04t0432600-02
Chr04	irgsp1_rep	CDS	21466802	21467016	.	-	2	Parent=Os04t0432600-02
Chr04	irgsp1_rep	three_prime_UTR	21466586	21466801	.	-	.	Parent=Os04t0432600-02
Chr04	irgsp1_rep	mRNA	21468980	21470947	.	-	.	ID=Os04t0432800-00;Name=Os04t0432800-00;Locus_id=Os04g0432800;Note=Similar to H0315E07.3 protein.;Transcript_evidence=tplb0040l12 (Wheat FLcDNA);ORF_evidence=Q01JF0 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os04t0432800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	21470449	21470947	.	-	0	Parent=Os04t0432800-00
Chr04	irgsp1_rep	CDS	21468980	21470262	.	-	2	Parent=Os04t0432800-00
Chr04	irgsp1_rep	mRNA	21491470	21494242	.	-	.	ID=Os04t0433000-01;Name=Os04t0433000-01;Locus_id=Os04g0433000;Note=Similar to H0315E07.7 protein.;Transcript_evidence=AK109803 (DDBJ%2C Best hit);ORF_evidence=Q01JE6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=MATH (IPR002083),TRAF-like (IPR008974),TRAF-type (IPR013322);NIAS_FLcDNA=002-147-F09;TENOR=Os04t0433000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	21494130	21494242	.	-	.	Parent=Os04t0433000-01
Chr04	irgsp1_rep	five_prime_UTR	21492828	21492889	.	-	.	Parent=Os04t0433000-01
Chr04	irgsp1_rep	CDS	21491793	21492827	.	-	0	Parent=Os04t0433000-01
Chr04	irgsp1_rep	three_prime_UTR	21491470	21491792	.	-	.	Parent=Os04t0433000-01
Chr04	irgsp1_rep	mRNA	21506157	21507281	.	-	.	ID=Os04t0433100-00;Name=Os04t0433100-00;Locus_id=Os04g0433100;Note=Similar to H0315E07.7 protein.;Transcript_evidence=AK376687 (DDBJ);ORF_evidence=Q01JE6 (UniProt);TENOR=Os04t0433100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	21506787	21507281	.	-	0	Parent=Os04t0433100-00
Chr04	irgsp1_rep	three_prime_UTR	21506157	21506786	.	-	.	Parent=Os04t0433100-00
Chr04	irgsp1_rep	mRNA	21513469	21518918	.	+	.	ID=Os04t0433200-01;Name=Os04t0433200-01;Locus_id=Os04g0433200;Note=Similar to H0315E07.10 protein.;Transcript_evidence=AK067758 (DDBJ%2C Best hit);ORF_evidence=Q01JE3 (UniProt);NIAS_FLcDNA=J013117O04;TENOR=Os04t0433200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	21513469	21513531	.	+	.	Parent=Os04t0433200-01
Chr04	irgsp1_rep	CDS	21513532	21513632	.	+	0	Parent=Os04t0433200-01
Chr04	irgsp1_rep	CDS	21513807	21513872	.	+	1	Parent=Os04t0433200-01
Chr04	irgsp1_rep	CDS	21514398	21514548	.	+	1	Parent=Os04t0433200-01
Chr04	irgsp1_rep	CDS	21515299	21515351	.	+	0	Parent=Os04t0433200-01
Chr04	irgsp1_rep	CDS	21516167	21516248	.	+	1	Parent=Os04t0433200-01
Chr04	irgsp1_rep	three_prime_UTR	21516249	21516524	.	+	.	Parent=Os04t0433200-01
Chr04	irgsp1_rep	three_prime_UTR	21516683	21516768	.	+	.	Parent=Os04t0433200-01
Chr04	irgsp1_rep	three_prime_UTR	21516872	21518316	.	+	.	Parent=Os04t0433200-01
Chr04	irgsp1_rep	three_prime_UTR	21518697	21518918	.	+	.	Parent=Os04t0433200-01
Chr04	irgsp1_rep	mRNA	21525319	21526256	.	+	.	ID=Os04t0433300-00;Name=Os04t0433300-00;Locus_id=Os04g0433300;Note=Hypothetical conserved gene.;Transcript_evidence=EU946393 (DDBJ);ORF_evidence=Q01JE2 (UniProt);TENOR=Os04t0433300-00;KEGG=Os04t0433300-00
Chr04	irgsp1_rep	CDS	21525319	21525969	.	+	0	Parent=Os04t0433300-00
Chr04	irgsp1_rep	CDS	21526029	21526256	.	+	0	Parent=Os04t0433300-00
Chr04	irgsp1_rep	mRNA	21539457	21543570	.	-	.	ID=Os04t0433600-01;Name=Os04t0433600-01;Locus_id=Os04g0433600;CGSNL Gene Symbol=DUF668-7;CGSNL Gene Name=DUF668 FAMILY MEMBER 7;Oryzabase Gene Symbol Synonym(s)=OsDUF668-7;Oryzabase Gene Name Synonym(s)=DUF668 family member 7;Note=Protein of unknown function DUF668 family protein.;Transcript_evidence=AK073390 (DDBJ%2C Best hit);ORF_evidence=Q7XUZ4 (UniProt);InterPro=Protein of unknown function DUF668 (IPR007700),Protein of unknown function DUF3475 (IPR021864);NIAS_FLcDNA=J033040M05;Oryzabase=23483;TENOR=Os04t0433600-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	21543007	21543570	.	-	.	Parent=Os04t0433600-01
Chr04	irgsp1_rep	CDS	21542994	21543006	.	-	0	Parent=Os04t0433600-01
Chr04	irgsp1_rep	CDS	21542579	21542889	.	-	2	Parent=Os04t0433600-01
Chr04	irgsp1_rep	CDS	21542019	21542344	.	-	0	Parent=Os04t0433600-01
Chr04	irgsp1_rep	CDS	21541833	21541925	.	-	1	Parent=Os04t0433600-01
Chr04	irgsp1_rep	CDS	21541663	21541753	.	-	1	Parent=Os04t0433600-01
Chr04	irgsp1_rep	CDS	21541501	21541588	.	-	0	Parent=Os04t0433600-01
Chr04	irgsp1_rep	CDS	21541145	21541254	.	-	2	Parent=Os04t0433600-01
Chr04	irgsp1_rep	CDS	21540986	21541055	.	-	0	Parent=Os04t0433600-01
Chr04	irgsp1_rep	CDS	21540805	21540908	.	-	2	Parent=Os04t0433600-01
Chr04	irgsp1_rep	CDS	21540454	21540570	.	-	0	Parent=Os04t0433600-01
Chr04	irgsp1_rep	CDS	21540302	21540378	.	-	0	Parent=Os04t0433600-01
Chr04	irgsp1_rep	CDS	21540138	21540179	.	-	1	Parent=Os04t0433600-01
Chr04	irgsp1_rep	CDS	21539814	21540033	.	-	1	Parent=Os04t0433600-01
Chr04	irgsp1_rep	three_prime_UTR	21539457	21539813	.	-	.	Parent=Os04t0433600-01
Chr04	irgsp1_rep	mRNA	21539457	21542849	.	-	.	ID=Os04t0433600-02;Name=Os04t0433600-02;Locus_id=Os04g0433600;CGSNL Gene Symbol=DUF668-7;CGSNL Gene Name=DUF668 FAMILY MEMBER 7;Oryzabase Gene Symbol Synonym(s)=OsDUF668-7;Oryzabase Gene Name Synonym(s)=DUF668 family member 7;Note=Protein of unknown function DUF3475 domain containing protein.;Transcript_evidence=AK068114 (DDBJ%2C Best hit);ORF_evidence=Q7XUZ4 (UniProt);InterPro=Protein of unknown function DUF3475 (IPR021864);NIAS_FLcDNA=J013133O21;Oryzabase=23483;TENOR=Os04t0433600-02;B5toI1=Exon-intron structures and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	21542849	21542849	.	-	.	Parent=Os04t0433600-02
Chr04	irgsp1_rep	CDS	21542579	21542848	.	-	0	Parent=Os04t0433600-02
Chr04	irgsp1_rep	CDS	21542019	21542344	.	-	0	Parent=Os04t0433600-02
Chr04	irgsp1_rep	CDS	21541833	21541925	.	-	1	Parent=Os04t0433600-02
Chr04	irgsp1_rep	CDS	21541663	21541753	.	-	1	Parent=Os04t0433600-02
Chr04	irgsp1_rep	CDS	21541501	21541588	.	-	0	Parent=Os04t0433600-02
Chr04	irgsp1_rep	CDS	21541145	21541254	.	-	2	Parent=Os04t0433600-02
Chr04	irgsp1_rep	CDS	21540986	21541055	.	-	0	Parent=Os04t0433600-02
Chr04	irgsp1_rep	CDS	21540736	21540908	.	-	2	Parent=Os04t0433600-02
Chr04	irgsp1_rep	three_prime_UTR	21540454	21540735	.	-	.	Parent=Os04t0433600-02
Chr04	irgsp1_rep	three_prime_UTR	21540302	21540378	.	-	.	Parent=Os04t0433600-02
Chr04	irgsp1_rep	three_prime_UTR	21540138	21540179	.	-	.	Parent=Os04t0433600-02
Chr04	irgsp1_rep	three_prime_UTR	21539457	21540033	.	-	.	Parent=Os04t0433600-02
Chr04	irgsp1_rep	mRNA	21539471	21541178	.	-	.	ID=Os04t0433600-03;Name=Os04t0433600-03;Locus_id=Os04g0433600;CGSNL Gene Symbol=DUF668-7;CGSNL Gene Name=DUF668 FAMILY MEMBER 7;Oryzabase Gene Symbol Synonym(s)=OsDUF668-7;Oryzabase Gene Name Synonym(s)=DUF668 family member 7;Note=Similar to predicted protein.;Transcript_evidence=AK061916 (DDBJ%2C Best hit);ORF_evidence=Q9XID5 (UniProt);InterPro=Protein of unknown function DUF668 (IPR007700);NIAS_FLcDNA=001-042-B01;Oryzabase=23483;Expression=AK061916;TENOR=Os04t0433600-03;KEGG=Os04t0433600-03
Chr04	irgsp1_rep	five_prime_UTR	21541178	21541178	.	-	.	Parent=Os04t0433600-03
Chr04	irgsp1_rep	CDS	21541145	21541177	.	-	0	Parent=Os04t0433600-03
Chr04	irgsp1_rep	CDS	21540986	21541055	.	-	0	Parent=Os04t0433600-03
Chr04	irgsp1_rep	CDS	21540805	21540908	.	-	2	Parent=Os04t0433600-03
Chr04	irgsp1_rep	CDS	21540454	21540570	.	-	0	Parent=Os04t0433600-03
Chr04	irgsp1_rep	CDS	21540302	21540378	.	-	0	Parent=Os04t0433600-03
Chr04	irgsp1_rep	CDS	21540138	21540179	.	-	1	Parent=Os04t0433600-03
Chr04	irgsp1_rep	CDS	21539814	21540033	.	-	1	Parent=Os04t0433600-03
Chr04	irgsp1_rep	three_prime_UTR	21539471	21539813	.	-	.	Parent=Os04t0433600-03
Chr04	irgsp1_rep	mRNA	21547173	21558299	.	-	.	ID=Os04t0433800-01;Name=Os04t0433800-01;Locus_id=Os04g0433800;Oryzabase Gene Symbol Synonym(s)=OsRecQl4%2C RecQl4%2C OsMed34_1%2C Med34_1;Oryzabase Gene Name Synonym(s)=RecQ like protein 4%2C Mediator 34_1;Note=Similar to RECQ4A%3B ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding.;Transcript_evidence=AK242898 (DDBJ%2C Best hit);ORF_evidence=NP_172562.2 (RefSeq);GO=Biological Process: DNA replication (GO:0006260),Biological Process: DNA repair (GO:0006281),Biological Process: DNA recombination (GO:0006310),Biological Process: cellular metabolic process (GO:0044237),Cellular Component: intracellular (GO:0005622),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: catalytic activity (GO:0003824),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026),Molecular Function: ATP-dependent 3'-5' DNA helicase activity (GO:0043140);InterPro=Helicase%2C C-terminal (IPR001650),Helicase/RNase D C-terminal%2C HRDC domain (IPR002121),DNA/RNA helicase%2C ATP-dependent%2C DEAH-box type%2C conserved site (IPR002464),DNA helicase%2C ATP-dependent%2C RecQ type (IPR004589),HRDC-like (IPR010997),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RQC domain (IPR018982);NIAS_FLcDNA=J090081H08;Oryzabase=11619;TENOR=Os04t0433800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	21558178	21558299	.	-	.	Parent=Os04t0433800-01
Chr04	irgsp1_rep	five_prime_UTR	21557289	21557321	.	-	.	Parent=Os04t0433800-01
Chr04	irgsp1_rep	CDS	21557029	21557288	.	-	0	Parent=Os04t0433800-01
Chr04	irgsp1_rep	CDS	21556290	21556347	.	-	1	Parent=Os04t0433800-01
Chr04	irgsp1_rep	CDS	21555441	21555854	.	-	0	Parent=Os04t0433800-01
Chr04	irgsp1_rep	CDS	21555156	21555311	.	-	0	Parent=Os04t0433800-01
Chr04	irgsp1_rep	CDS	21554930	21555054	.	-	0	Parent=Os04t0433800-01
Chr04	irgsp1_rep	CDS	21554275	21554647	.	-	1	Parent=Os04t0433800-01
Chr04	irgsp1_rep	CDS	21554064	21554195	.	-	0	Parent=Os04t0433800-01
Chr04	irgsp1_rep	CDS	21553379	21553465	.	-	0	Parent=Os04t0433800-01
Chr04	irgsp1_rep	CDS	21553178	21553305	.	-	0	Parent=Os04t0433800-01
Chr04	irgsp1_rep	CDS	21552765	21552885	.	-	1	Parent=Os04t0433800-01
Chr04	irgsp1_rep	CDS	21552540	21552691	.	-	0	Parent=Os04t0433800-01
Chr04	irgsp1_rep	CDS	21552328	21552463	.	-	1	Parent=Os04t0433800-01
Chr04	irgsp1_rep	CDS	21550554	21550677	.	-	0	Parent=Os04t0433800-01
Chr04	irgsp1_rep	CDS	21550409	21550479	.	-	2	Parent=Os04t0433800-01
Chr04	irgsp1_rep	CDS	21550254	21550322	.	-	0	Parent=Os04t0433800-01
Chr04	irgsp1_rep	CDS	21550050	21550166	.	-	0	Parent=Os04t0433800-01
Chr04	irgsp1_rep	CDS	21549812	21549970	.	-	0	Parent=Os04t0433800-01
Chr04	irgsp1_rep	CDS	21549637	21549717	.	-	0	Parent=Os04t0433800-01
Chr04	irgsp1_rep	CDS	21549276	21549437	.	-	0	Parent=Os04t0433800-01
Chr04	irgsp1_rep	CDS	21549091	21549146	.	-	0	Parent=Os04t0433800-01
Chr04	irgsp1_rep	CDS	21548180	21548276	.	-	1	Parent=Os04t0433800-01
Chr04	irgsp1_rep	CDS	21547989	21548080	.	-	0	Parent=Os04t0433800-01
Chr04	irgsp1_rep	CDS	21547833	21547910	.	-	1	Parent=Os04t0433800-01
Chr04	irgsp1_rep	CDS	21547352	21547736	.	-	1	Parent=Os04t0433800-01
Chr04	irgsp1_rep	three_prime_UTR	21547173	21547351	.	-	.	Parent=Os04t0433800-01
Chr04	irgsp1_rep	mRNA	21559486	21565988	.	-	.	ID=Os04t0433900-00;Name=Os04t0433900-00;Locus_id=Os04g0433900;Note=Similar to predicted protein.;Transcript_evidence=BT060643 (DDBJ);ORF_evidence=Q7XQB5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: protein binding (GO:0005515),Molecular Function: N-acetyltransferase activity (GO:0008080),Molecular Function: zinc ion binding (GO:0008270);InterPro=GCN5-related N-acetyltransferase (GNAT) domain (IPR000182),Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Acyl-CoA N-acyltransferase (IPR016181),Zinc finger%2C PHD-finger (IPR019787);TENOR=Os04t0433900-00;KEGG=Os04t0433900-00
Chr04	irgsp1_rep	CDS	21562767	21565988	.	-	0	Parent=Os04t0433900-00
Chr04	irgsp1_rep	CDS	21562065	21562188	.	-	0	Parent=Os04t0433900-00
Chr04	irgsp1_rep	CDS	21561570	21561655	.	-	2	Parent=Os04t0433900-00
Chr04	irgsp1_rep	CDS	21561110	21561348	.	-	0	Parent=Os04t0433900-00
Chr04	irgsp1_rep	CDS	21560887	21560973	.	-	1	Parent=Os04t0433900-00
Chr04	irgsp1_rep	CDS	21560661	21560760	.	-	1	Parent=Os04t0433900-00
Chr04	irgsp1_rep	CDS	21559668	21559961	.	-	0	Parent=Os04t0433900-00
Chr04	irgsp1_rep	three_prime_UTR	21559486	21559667	.	-	.	Parent=Os04t0433900-00
Chr04	irgsp1_rep	mRNA	21591792	21595222	.	-	.	ID=Os04t0434300-01;Name=Os04t0434300-01;Locus_id=Os04g0434300;Note=MiaB-like tRNA modifying enzyme%2C archaeal-type domain containing protein.;Transcript_evidence=AK101879 (DDBJ%2C Best hit);ORF_evidence=XP_002887411.1 (RefSeq);GO=Biological Process: RNA modification (GO:0009451),Biological Process: macromolecule modification (GO:0043412),Cellular Component: cellular_component (GO:0005575),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity (GO:0016740),Molecular Function: iron-sulfur cluster binding (GO:0051536),Molecular Function: 4 iron%2C 4 sulfur cluster binding (GO:0051539);InterPro=Deoxyribonuclease/rho motif-related TRAM (IPR002792),Methylthiotransferase (IPR005839),MiaB-like tRNA modifying enzyme%2C archaeal-type (IPR006466),Elongator protein 3/MiaB/NifB (IPR006638),Radical SAM (IPR007197),Methylthiotransferase%2C N-terminal (IPR013848),Methylthiotransferase%2C conserved site (IPR020612),Radical SAM%2C alpha/beta horseshoe (IPR023404),Methylthiotransferase/B12-binding/radical SAM-type (IPR023970);NIAS_FLcDNA=J033070J24;Expression=AK101879;TENOR=Os04t0434300-01;KEGG=Os04t0434300-01
Chr04	irgsp1_rep	CDS	21595064	21595222	.	-	0	Parent=Os04t0434300-01
Chr04	irgsp1_rep	CDS	21594933	21594971	.	-	0	Parent=Os04t0434300-01
Chr04	irgsp1_rep	CDS	21594573	21594664	.	-	0	Parent=Os04t0434300-01
Chr04	irgsp1_rep	CDS	21594004	21594253	.	-	1	Parent=Os04t0434300-01
Chr04	irgsp1_rep	CDS	21593734	21593853	.	-	0	Parent=Os04t0434300-01
Chr04	irgsp1_rep	CDS	21593573	21593648	.	-	0	Parent=Os04t0434300-01
Chr04	irgsp1_rep	CDS	21593268	21593476	.	-	2	Parent=Os04t0434300-01
Chr04	irgsp1_rep	CDS	21593035	21593143	.	-	0	Parent=Os04t0434300-01
Chr04	irgsp1_rep	CDS	21592805	21592897	.	-	2	Parent=Os04t0434300-01
Chr04	irgsp1_rep	CDS	21592552	21592712	.	-	2	Parent=Os04t0434300-01
Chr04	irgsp1_rep	CDS	21591887	21592444	.	-	0	Parent=Os04t0434300-01
Chr04	irgsp1_rep	three_prime_UTR	21591792	21591886	.	-	.	Parent=Os04t0434300-01
Chr04	irgsp1_rep	mRNA	21595744	21597780	.	+	.	ID=Os04t0434400-01;Name=Os04t0434400-01;Locus_id=Os04g0434400;Oryzabase Gene Symbol Synonym(s)=OsEnS-66;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 66;Note=Similar to H0823A09.7 protein.;Transcript_evidence=AK063725 (DDBJ%2C Best hit);ORF_evidence=Q01IZ2 (UniProt);NIAS_FLcDNA=001-120-D11;Oryzabase=18388;Expression=AK063725;TENOR=Os04t0434400-01;KEGG=Os04t0434400-01
Chr04	irgsp1_rep	five_prime_UTR	21595744	21595795	.	+	.	Parent=Os04t0434400-01
Chr04	irgsp1_rep	CDS	21595796	21596251	.	+	0	Parent=Os04t0434400-01
Chr04	irgsp1_rep	CDS	21596854	21597043	.	+	0	Parent=Os04t0434400-01
Chr04	irgsp1_rep	CDS	21597123	21597526	.	+	2	Parent=Os04t0434400-01
Chr04	irgsp1_rep	three_prime_UTR	21597527	21597780	.	+	.	Parent=Os04t0434400-01
Chr04	irgsp1_rep	mRNA	21600673	21601888	.	-	.	ID=Os04t0434500-00;Name=Os04t0434500-00;Locus_id=Os04g0434500;Oryzabase Gene Symbol Synonym(s)=OsZHD8;Oryzabase Gene Name Synonym(s)=zinc finger homeodomain class homeobox transcription factor 8;Note=Homeodomain-related domain containing protein.;Transcript_evidence=EU973235 (DDBJ);ORF_evidence=Q01IZ1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Homeobox domain%2C ZF-HD class (IPR006455),ZF-HD homeobox protein%2C Cys/His-rich dimerisation domain (IPR006456),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);Oryzabase=15621;TENOR=Os04t0434500-00;KEGG=Os04t0434500-00
Chr04	irgsp1_rep	five_prime_UTR	21601791	21601888	.	-	.	Parent=Os04t0434500-00
Chr04	irgsp1_rep	CDS	21600936	21601790	.	-	0	Parent=Os04t0434500-00
Chr04	irgsp1_rep	three_prime_UTR	21600673	21600935	.	-	.	Parent=Os04t0434500-00
Chr04	irgsp1_rep	mRNA	21609873	21620083	.	-	.	ID=Os04t0434600-00;Name=Os04t0434600-00;Locus_id=Os04g0434600;Note=Similar to OSIGBa0102D10.3 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01IZ0 (UniProt);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752),Kinesin%2C motor region%2C conserved site (IPR019821);TENOR=Os04t0434600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	21619921	21620083	.	-	0	Parent=Os04t0434600-00
Chr04	irgsp1_rep	CDS	21619061	21619150	.	-	2	Parent=Os04t0434600-00
Chr04	irgsp1_rep	CDS	21618490	21618542	.	-	2	Parent=Os04t0434600-00
Chr04	irgsp1_rep	CDS	21618231	21618296	.	-	0	Parent=Os04t0434600-00
Chr04	irgsp1_rep	CDS	21618101	21618154	.	-	0	Parent=Os04t0434600-00
Chr04	irgsp1_rep	CDS	21617864	21617923	.	-	0	Parent=Os04t0434600-00
Chr04	irgsp1_rep	CDS	21617532	21617610	.	-	0	Parent=Os04t0434600-00
Chr04	irgsp1_rep	CDS	21616978	21617054	.	-	2	Parent=Os04t0434600-00
Chr04	irgsp1_rep	CDS	21616765	21616869	.	-	0	Parent=Os04t0434600-00
Chr04	irgsp1_rep	CDS	21616261	21616365	.	-	0	Parent=Os04t0434600-00
Chr04	irgsp1_rep	CDS	21616021	21616128	.	-	0	Parent=Os04t0434600-00
Chr04	irgsp1_rep	CDS	21615807	21615953	.	-	0	Parent=Os04t0434600-00
Chr04	irgsp1_rep	CDS	21615410	21615592	.	-	0	Parent=Os04t0434600-00
Chr04	irgsp1_rep	CDS	21614468	21614638	.	-	0	Parent=Os04t0434600-00
Chr04	irgsp1_rep	CDS	21612821	21613057	.	-	0	Parent=Os04t0434600-00
Chr04	irgsp1_rep	CDS	21612213	21612353	.	-	0	Parent=Os04t0434600-00
Chr04	irgsp1_rep	CDS	21611957	21612082	.	-	0	Parent=Os04t0434600-00
Chr04	irgsp1_rep	CDS	21611651	21611701	.	-	0	Parent=Os04t0434600-00
Chr04	irgsp1_rep	CDS	21611192	21611428	.	-	0	Parent=Os04t0434600-00
Chr04	irgsp1_rep	CDS	21610725	21611088	.	-	0	Parent=Os04t0434600-00
Chr04	irgsp1_rep	CDS	21610411	21610637	.	-	2	Parent=Os04t0434600-00
Chr04	irgsp1_rep	CDS	21610132	21610221	.	-	0	Parent=Os04t0434600-00
Chr04	irgsp1_rep	CDS	21609873	21609938	.	-	0	Parent=Os04t0434600-00
Chr04	irgsp1_rep	mRNA	21609418	21609861	.	-	.	ID=Os04t0434700-01;Name=Os04t0434700-01;Locus_id=Os04g0434700;Note=Non-protein coding transcript.;Transcript_evidence=AK062857 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-108-A10;TENOR=Os04t0434700-01
Chr04	irgsp1_rep	exon	21609418	21609861	.	-	.	Parent=Os04t0434700-01
Chr04	irgsp1_rep	mRNA	21622953	21627231	.	-	.	ID=Os04t0434800-01;Name=Os04t0434800-01;Locus_id=Os04g0434800;CGSNL Gene Symbol=APX7;CGSNL Gene Name=ASCORBATE PEROXIDASE 7;Oryzabase Gene Symbol Synonym(s)=OsAPx7%2C OsAPx07%2C OSAPX7%2C APx7%2C sAPX;Oryzabase Gene Name Synonym(s)=ascorbate peroxidase 7%2C stromal Ascorbate Peroxidase;Note=Similar to Thylakoid-bound ascorbate peroxidase (EC 1.11.1.11) (Fragment).;Transcript_evidence=AK063934 (DDBJ%2C Best hit);ORF_evidence=Q01IY9 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Plant ascorbate peroxidase (IPR002207),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793);NIAS_FLcDNA=001-123-D06;Oryzabase=8957;Expression=AK063934;TENOR=Os04t0434800-01;KEGG=Os04t0434800-01 (EC:1.11.1.11)
Chr04	irgsp1_rep	five_prime_UTR	21627184	21627231	.	-	.	Parent=Os04t0434800-01
Chr04	irgsp1_rep	CDS	21627007	21627183	.	-	0	Parent=Os04t0434800-01
Chr04	irgsp1_rep	CDS	21626744	21626902	.	-	0	Parent=Os04t0434800-01
Chr04	irgsp1_rep	CDS	21625526	21625646	.	-	0	Parent=Os04t0434800-01
Chr04	irgsp1_rep	CDS	21625340	21625440	.	-	2	Parent=Os04t0434800-01
Chr04	irgsp1_rep	CDS	21625134	21625221	.	-	0	Parent=Os04t0434800-01
Chr04	irgsp1_rep	CDS	21624747	21624814	.	-	2	Parent=Os04t0434800-01
Chr04	irgsp1_rep	CDS	21624564	21624650	.	-	0	Parent=Os04t0434800-01
Chr04	irgsp1_rep	CDS	21623993	21624067	.	-	0	Parent=Os04t0434800-01
Chr04	irgsp1_rep	CDS	21623827	21623904	.	-	0	Parent=Os04t0434800-01
Chr04	irgsp1_rep	CDS	21623595	21623699	.	-	0	Parent=Os04t0434800-01
Chr04	irgsp1_rep	CDS	21623374	21623394	.	-	0	Parent=Os04t0434800-01
Chr04	irgsp1_rep	three_prime_UTR	21622953	21623373	.	-	.	Parent=Os04t0434800-01
Chr04	irgsp1_rep	mRNA	21622953	21627230	.	-	.	ID=Os04t0434800-02;Name=Os04t0434800-02;Locus_id=Os04g0434800;RAP-DB Gene Symbol Synonym(s)=OsAPX7%2C sAPX;RAP-DB Gene Name Synonym(s)=ascorbate peroxidase 7%2C stroma ascorbate peroxidase;CGSNL Gene Symbol=APX7;CGSNL Gene Name=ASCORBATE PEROXIDASE 7;Oryzabase Gene Symbol Synonym(s)=OsAPx7%2C OsAPx07%2C OSAPX7%2C APx7%2C sAPX;Oryzabase Gene Name Synonym(s)=ascorbate peroxidase 7%2C stromal Ascorbate Peroxidase;Note=Chloroplastic ascorbate peroxidase%2C Stroma ascorbate peroxidase%2C Protection of the photosystem II (PSII) activity under methyl violagen (MV)-induced oxidative stress;Transcript_evidence=AK103344;ORF_evidence=Q7XJ02;GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Haem peroxidase superfamily (IPR010255),Class I peroxidase (IPR002207),Haem peroxidase (IPR002016),Peroxidases heam-ligand binding site (IPR019793);NIAS_FLcDNA=J033126C20;Manual Curation=July 22%2C 2020;Literature_PMID=24268165;Oryzabase=8957;Expression=AK103344;TENOR=Os04t0434800-02
Chr04	irgsp1_rep	five_prime_UTR	21627184	21627230	.	-	.	Parent=Os04t0434800-02
Chr04	irgsp1_rep	CDS	21627007	21627183	.	-	0	Parent=Os04t0434800-02
Chr04	irgsp1_rep	CDS	21626744	21626902	.	-	0	Parent=Os04t0434800-02
Chr04	irgsp1_rep	CDS	21625526	21625646	.	-	0	Parent=Os04t0434800-02
Chr04	irgsp1_rep	CDS	21625340	21625440	.	-	2	Parent=Os04t0434800-02
Chr04	irgsp1_rep	CDS	21625134	21625221	.	-	0	Parent=Os04t0434800-02
Chr04	irgsp1_rep	CDS	21624747	21624814	.	-	2	Parent=Os04t0434800-02
Chr04	irgsp1_rep	CDS	21624564	21624650	.	-	0	Parent=Os04t0434800-02
Chr04	irgsp1_rep	CDS	21623993	21624067	.	-	0	Parent=Os04t0434800-02
Chr04	irgsp1_rep	CDS	21623827	21623904	.	-	0	Parent=Os04t0434800-02
Chr04	irgsp1_rep	CDS	21623595	21623699	.	-	0	Parent=Os04t0434800-02
Chr04	irgsp1_rep	CDS	21623374	21623394	.	-	0	Parent=Os04t0434800-02
Chr04	irgsp1_rep	three_prime_UTR	21623322	21623373	.	-	.	Parent=Os04t0434800-02
Chr04	irgsp1_rep	three_prime_UTR	21622953	21623178	.	-	.	Parent=Os04t0434800-02
Chr04	irgsp1_rep	mRNA	21629493	21630229	.	+	.	ID=Os04t0434900-00;Name=Os04t0434900-00;Locus_id=Os04g0434900;Note=Similar to OSIGBa0102D10.5 protein.;Transcript_evidence=CT835088 (DDBJ%2C Best hit);ORF_evidence=Q01IY8 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: oxygen evolving complex (GO:0009654),Cellular Component: extrinsic to membrane (GO:0019898),Molecular Function: calcium ion binding (GO:0005509);InterPro=Photosystem II PsbP%2C oxygen evolving complex (IPR002683),Mog1/PsbP%2C alpha/beta/alpha sandwich (IPR016123),Mog1/PsbP/DUF1795%2C alpha/beta/alpha sandwich (IPR016124);TENOR=Os04t0434900-00;KEGG=Os04t0434900-00
Chr04	irgsp1_rep	five_prime_UTR	21629493	21629565	.	+	.	Parent=Os04t0434900-00
Chr04	irgsp1_rep	CDS	21629566	21629838	.	+	0	Parent=Os04t0434900-00
Chr04	irgsp1_rep	CDS	21629851	21629925	.	+	0	Parent=Os04t0434900-00
Chr04	irgsp1_rep	CDS	21630080	21630229	.	+	0	Parent=Os04t0434900-00
Chr04	irgsp1_rep	mRNA	21635403	21635813	.	+	.	ID=Os04t0435000-01;Name=Os04t0435000-01;Locus_id=Os04g0435000;Note=Conserved hypothetical protein.;Transcript_evidence=AK105324 (DDBJ%2C Best hit);ORF_evidence=Q5QL18 (UniProt);NIAS_FLcDNA=001-117-H04;TENOR=Os04t0435000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	21635403	21635430	.	+	.	Parent=Os04t0435000-01
Chr04	irgsp1_rep	CDS	21635431	21635571	.	+	0	Parent=Os04t0435000-01
Chr04	irgsp1_rep	three_prime_UTR	21635572	21635813	.	+	.	Parent=Os04t0435000-01
Chr04	irgsp1_rep	mRNA	21637785	21642587	.	+	.	ID=Os04t0435100-01;Name=Os04t0435100-01;Locus_id=Os04g0435100;Oryzabase Gene Symbol Synonym(s)=OsBAT7;Oryzabase Gene Name Synonym(s)=bi-directional amino acid transporter 7;Note=Amino acid/polyamine transporter I family protein.;Transcript_evidence=AK068521 (DDBJ%2C Best hit);ORF_evidence=Q01IY7 (UniProt);GO=Biological Process: amino acid transmembrane transport (GO:0003333),Biological Process: transport (GO:0006810),Biological Process: amino acid transport (GO:0006865),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: amino acid transmembrane transporter activity (GO:0015171);InterPro=Amino acid/polyamine transporter I (IPR002293),Amino acid permease%2C conserved site (IPR004840),Amino acid permease domain (IPR004841);NIAS_FLcDNA=J013155C12;Oryzabase=18552;Expression=AK068521;TENOR=Os04t0435100-01;KEGG=Os04t0435100-01
Chr04	irgsp1_rep	five_prime_UTR	21637785	21637978	.	+	.	Parent=Os04t0435100-01
Chr04	irgsp1_rep	CDS	21637979	21638059	.	+	0	Parent=Os04t0435100-01
Chr04	irgsp1_rep	CDS	21638380	21638562	.	+	0	Parent=Os04t0435100-01
Chr04	irgsp1_rep	CDS	21639670	21639789	.	+	0	Parent=Os04t0435100-01
Chr04	irgsp1_rep	CDS	21640114	21640305	.	+	0	Parent=Os04t0435100-01
Chr04	irgsp1_rep	CDS	21640504	21640809	.	+	0	Parent=Os04t0435100-01
Chr04	irgsp1_rep	CDS	21641660	21642370	.	+	0	Parent=Os04t0435100-01
Chr04	irgsp1_rep	three_prime_UTR	21642371	21642587	.	+	.	Parent=Os04t0435100-01
Chr04	irgsp1_rep	mRNA	21641511	21643147	.	-	.	ID=Os04t0435200-01;Name=Os04t0435200-01;Locus_id=Os04g0435200;Note=Hypothetical protein.;Transcript_evidence=AK107452 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-128-C06;Expression=AK107452;TENOR=Os04t0435200-01;KEGG=Os04t0435200-01
Chr04	irgsp1_rep	five_prime_UTR	21642350	21643147	.	-	.	Parent=Os04t0435200-01
Chr04	irgsp1_rep	CDS	21641516	21642349	.	-	0	Parent=Os04t0435200-01
Chr04	irgsp1_rep	three_prime_UTR	21641511	21641515	.	-	.	Parent=Os04t0435200-01
Chr04	irgsp1_rep	mRNA	21643960	21658120	.	+	.	ID=Os04t0435300-01;Name=Os04t0435300-01;Locus_id=Os04g0435300;Note=Hypothetical gene.;Transcript_evidence=AK068680 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013158G01;Expression=AK068680;TENOR=Os04t0435300-01;KEGG=Os04t0435300-01
Chr04	irgsp1_rep	five_prime_UTR	21643960	21644157	.	+	.	Parent=Os04t0435300-01
Chr04	irgsp1_rep	five_prime_UTR	21653643	21653747	.	+	.	Parent=Os04t0435300-01
Chr04	irgsp1_rep	five_prime_UTR	21654588	21654686	.	+	.	Parent=Os04t0435300-01
Chr04	irgsp1_rep	five_prime_UTR	21654782	21655052	.	+	.	Parent=Os04t0435300-01
Chr04	irgsp1_rep	five_prime_UTR	21655601	21655709	.	+	.	Parent=Os04t0435300-01
Chr04	irgsp1_rep	five_prime_UTR	21656312	21656380	.	+	.	Parent=Os04t0435300-01
Chr04	irgsp1_rep	CDS	21656381	21656395	.	+	0	Parent=Os04t0435300-01
Chr04	irgsp1_rep	CDS	21657859	21658065	.	+	0	Parent=Os04t0435300-01
Chr04	irgsp1_rep	three_prime_UTR	21658066	21658120	.	+	.	Parent=Os04t0435300-01
Chr04	irgsp1_rep	mRNA	21650405	21650715	.	-	.	ID=Os04t0435325-00;Name=Os04t0435325-00;Locus_id=Os04g0435325;Note=Conserved hypothetical protein.;Transcript_evidence=EU972382 (DDBJ);ORF_evidence=Q7XT22 (UniProt);TENOR=Os04t0435325-00
Chr04	irgsp1_rep	CDS	21650464	21650715	.	-	0	Parent=Os04t0435325-00
Chr04	irgsp1_rep	three_prime_UTR	21650405	21650463	.	-	.	Parent=Os04t0435325-00
Chr04	irgsp1_rep	mRNA	21652387	21652820	.	-	.	ID=Os04t0435350-00;Name=Os04t0435350-00;Locus_id=Os04g0435350;Note=Non-protein coding transcript.;Transcript_evidence=EU963940 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0435350-00
Chr04	irgsp1_rep	exon	21652387	21652820	.	-	.	Parent=Os04t0435350-00
Chr04	irgsp1_rep	mRNA	21654339	21654767	.	-	.	ID=Os04t0435402-00;Name=Os04t0435402-00;Locus_id=Os04g0435402;Note=Non-protein coding transcript.;Transcript_evidence=EU963940 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0435402-00
Chr04	irgsp1_rep	exon	21654339	21654767	.	-	.	Parent=Os04t0435402-00
Chr04	irgsp1_rep	mRNA	21656698	21658847	.	-	.	ID=Os04t0435450-00;Name=Os04t0435450-00;Locus_id=Os04g0435450;Note=Non-protein coding transcript.;Transcript_evidence=EU963940 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0435450-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	exon	21658733	21658847	.	-	.	Parent=Os04t0435450-00
Chr04	irgsp1_rep	exon	21656698	21657024	.	-	.	Parent=Os04t0435450-00
Chr04	irgsp1_rep	mRNA	21661225	21661772	.	-	.	ID=Os04t0435475-00;Name=Os04t0435475-00;Locus_id=Os04g0435475;Note=Conserved hypothetical protein.;Transcript_evidence=AK372805 (DDBJ);ORF_evidence=Q7XT22 (UniProt);TENOR=Os04t0435475-00
Chr04	irgsp1_rep	CDS	21661446	21661772	.	-	0	Parent=Os04t0435475-00
Chr04	irgsp1_rep	three_prime_UTR	21661225	21661445	.	-	.	Parent=Os04t0435475-00
Chr04	irgsp1_rep	mRNA	21662080	21664310	.	-	.	ID=Os04t0435500-01;Name=Os04t0435500-01;Locus_id=Os04g0435500;CGSNL Gene Symbol=TCHQD1;CGSNL Gene Name=TETRACHLOROHYDROQUINONE DEHYDROGENASE 1;Oryzabase Gene Symbol Synonym(s)=OsTCHQD1;Oryzabase Gene Name Synonym(s)=Glutathione S-transferase;Note=Glutathione S-transferase%2C C-terminal-like domain containing protein.;Transcript_evidence=AK060125 (DDBJ%2C Best hit),AK104121 (DDBJ%2C Best hit);ORF_evidence=Q01IY6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=006-308-H10,006-203-C06;Oryzabase=9574;TENOR=Os04t0435500-01
Chr04	irgsp1_rep	five_prime_UTR	21664135	21664310	.	-	.	Parent=Os04t0435500-01
Chr04	irgsp1_rep	five_prime_UTR	21663342	21663343	.	-	.	Parent=Os04t0435500-01
Chr04	irgsp1_rep	CDS	21663133	21663341	.	-	0	Parent=Os04t0435500-01
Chr04	irgsp1_rep	CDS	21662436	21663024	.	-	1	Parent=Os04t0435500-01
Chr04	irgsp1_rep	three_prime_UTR	21662080	21662435	.	-	.	Parent=Os04t0435500-01
Chr04	irgsp1_rep	mRNA	21662080	21664310	.	-	.	ID=Os04t0435500-02;Name=Os04t0435500-02;Locus_id=Os04g0435500;CGSNL Gene Symbol=TCHQD1;CGSNL Gene Name=TETRACHLOROHYDROQUINONE DEHYDROGENASE 1;Oryzabase Gene Symbol Synonym(s)=OsTCHQD1;Oryzabase Gene Name Synonym(s)=Glutathione S-transferase;Note=Glutathione S-transferase%2C C-terminal-like domain containing protein.;Transcript_evidence=AK100671 (DDBJ%2C Best hit);ORF_evidence=Q01IY6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=J023112M18;Oryzabase=9574;Expression=AK100671;TENOR=Os04t0435500-02;KEGG=Os04t0435500-02
Chr04	irgsp1_rep	five_prime_UTR	21663342	21664310	.	-	.	Parent=Os04t0435500-02
Chr04	irgsp1_rep	CDS	21663133	21663341	.	-	0	Parent=Os04t0435500-02
Chr04	irgsp1_rep	CDS	21662436	21663024	.	-	1	Parent=Os04t0435500-02
Chr04	irgsp1_rep	three_prime_UTR	21662080	21662435	.	-	.	Parent=Os04t0435500-02
Chr04	irgsp1_rep	mRNA	21682613	21688122	.	+	.	ID=Os04t0435700-01;Name=Os04t0435700-01;Locus_id=Os04g0435700;Note=Similar to UVB-resistance protein UVR8.;Transcript_evidence=AK100857 (DDBJ%2C Best hit);ORF_evidence=A2XTP3 (UniProt);InterPro=Regulator of Chromosome condensation%2C RCC1 (IPR000408),Regulator of Chromosome condensation/beta-lactamase-inhibitor protein II (IPR009091);NIAS_FLcDNA=J023123M01;Oryzabase=22689;Expression=AK100857;TENOR=Os04t0435700-01;KEGG=Os04t0435700-01
Chr04	irgsp1_rep	five_prime_UTR	21682613	21682954	.	+	.	Parent=Os04t0435700-01
Chr04	irgsp1_rep	CDS	21682955	21683069	.	+	0	Parent=Os04t0435700-01
Chr04	irgsp1_rep	CDS	21683180	21683519	.	+	2	Parent=Os04t0435700-01
Chr04	irgsp1_rep	CDS	21684000	21684081	.	+	1	Parent=Os04t0435700-01
Chr04	irgsp1_rep	CDS	21684561	21684716	.	+	0	Parent=Os04t0435700-01
Chr04	irgsp1_rep	CDS	21685827	21686000	.	+	0	Parent=Os04t0435700-01
Chr04	irgsp1_rep	CDS	21686141	21686212	.	+	0	Parent=Os04t0435700-01
Chr04	irgsp1_rep	CDS	21686945	21687016	.	+	0	Parent=Os04t0435700-01
Chr04	irgsp1_rep	CDS	21687129	21687247	.	+	0	Parent=Os04t0435700-01
Chr04	irgsp1_rep	CDS	21687348	21687433	.	+	1	Parent=Os04t0435700-01
Chr04	irgsp1_rep	CDS	21687523	21687575	.	+	2	Parent=Os04t0435700-01
Chr04	irgsp1_rep	CDS	21687714	21687806	.	+	0	Parent=Os04t0435700-01
Chr04	irgsp1_rep	three_prime_UTR	21687807	21688122	.	+	.	Parent=Os04t0435700-01
Chr04	irgsp1_rep	mRNA	21692755	21693624	.	+	.	ID=Os04t0436000-00;Name=Os04t0436000-00;Locus_id=Os04g0436000;Note=Conserved hypothetical protein.;Transcript_evidence=AK372391 (DDBJ);ORF_evidence=NP_001052850.2 (RefSeq);TENOR=Os04t0436000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	21692755	21693624	.	+	0	Parent=Os04t0436000-00
Chr04	irgsp1_rep	mRNA	21695578	21698610	.	-	.	ID=Os04t0436100-01;Name=Os04t0436100-01;Locus_id=Os04g0436100;RAP-DB Gene Symbol Synonym(s)=OsACOT;RAP-DB Gene Name Synonym(s)=Acyl-CoA thioesterase;CGSNL Gene Symbol=ACOT;CGSNL Gene Name=ACYL-COA THIOESTERASE;Oryzabase Gene Symbol Synonym(s)=OsACOT;Oryzabase Gene Name Synonym(s)=Acyl-CoA thioesterase;Note=Acyl-CoA thioesterase%2C Target of miR1432%2C Regulation of fatty acid metabolism%2C Grain filling;Transcript_evidence=AK072631;ORF_evidence=Q7XV63;InterPro=HotDog domain superfamily (IPR029069),Thioesterase domain (IPR006683),Phenylacetic acid degradation-related domain (IPR003736);NIAS_FLcDNA=J023132I18;Manual Curation=January 25%2C 2019;Literature_PMID=30183128;Oryzabase=22770;Expression=AK072631;TENOR=Os04t0436100-01;KEGG=Os04t0436100-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	21698490	21698610	.	-	.	Parent=Os04t0436100-01
Chr04	irgsp1_rep	CDS	21698316	21698489	.	-	0	Parent=Os04t0436100-01
Chr04	irgsp1_rep	CDS	21698063	21698206	.	-	0	Parent=Os04t0436100-01
Chr04	irgsp1_rep	CDS	21695881	21696024	.	-	0	Parent=Os04t0436100-01
Chr04	irgsp1_rep	three_prime_UTR	21695578	21695880	.	-	.	Parent=Os04t0436100-01
Chr04	irgsp1_rep	mRNA	21699925	21702992	.	-	.	ID=Os04t0436300-01;Name=Os04t0436300-01;Locus_id=Os04g0436300;Oryzabase Gene Symbol Synonym(s)=PDIL1%3B2%2C PDIL1-2%2C PDIL 1-2%2C OsPDIL1-2;Oryzabase Gene Name Synonym(s)=PROTEIN DISULFIDE ISOMERASE-LIKE 1%3B2%2C PROTEIN DISULFIDE ISOMERASE-LIKE 1-2%2C PDI-like protein 1-2;Note=Protein disulphide isomerase isoform/multifunctional endoplasmic reticulum luminal polypeptide (D-ERp60).;Transcript_evidence=AK101074 (DDBJ%2C Best hit);ORF_evidence=B9FFA7 (UniProt);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035),Molecular Function: isomerase activity (GO:0016853);InterPro=Thioredoxin (IPR005746),Disulphide isomerase (IPR005788),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766),Thioredoxin%2C conserved site (IPR017937);NIAS_FLcDNA=J033024A20;Oryzabase=11897;Expression=AK101074;TENOR=Os04t0436300-01;KEGG=Os04t0436300-01 (EC:5.3.4.1)
Chr04	irgsp1_rep	five_prime_UTR	21702954	21702992	.	-	.	Parent=Os04t0436300-01
Chr04	irgsp1_rep	CDS	21702775	21702953	.	-	0	Parent=Os04t0436300-01
Chr04	irgsp1_rep	CDS	21702649	21702679	.	-	1	Parent=Os04t0436300-01
Chr04	irgsp1_rep	CDS	21702253	21702540	.	-	0	Parent=Os04t0436300-01
Chr04	irgsp1_rep	CDS	21701934	21702122	.	-	0	Parent=Os04t0436300-01
Chr04	irgsp1_rep	CDS	21701655	21701849	.	-	0	Parent=Os04t0436300-01
Chr04	irgsp1_rep	three_prime_UTR	21700655	21701654	.	-	.	Parent=Os04t0436300-01
Chr04	irgsp1_rep	three_prime_UTR	21700300	21700553	.	-	.	Parent=Os04t0436300-01
Chr04	irgsp1_rep	three_prime_UTR	21699925	21700199	.	-	.	Parent=Os04t0436300-01
Chr04	irgsp1_rep	mRNA	21706092	21712088	.	-	.	ID=Os04t0436400-01;Name=Os04t0436400-01;Locus_id=Os04g0436400;Note=Conserved hypothetical protein.;Transcript_evidence=AK067679 (DDBJ%2C Best hit);ORF_evidence=NP_001067415.1 (RefSeq);NIAS_FLcDNA=J013114G19;TENOR=Os04t0436400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	21711788	21712088	.	-	.	Parent=Os04t0436400-01
Chr04	irgsp1_rep	five_prime_UTR	21710929	21711708	.	-	.	Parent=Os04t0436400-01
Chr04	irgsp1_rep	CDS	21710763	21710928	.	-	0	Parent=Os04t0436400-01
Chr04	irgsp1_rep	CDS	21710608	21710669	.	-	2	Parent=Os04t0436400-01
Chr04	irgsp1_rep	three_prime_UTR	21710512	21710607	.	-	.	Parent=Os04t0436400-01
Chr04	irgsp1_rep	three_prime_UTR	21710364	21710420	.	-	.	Parent=Os04t0436400-01
Chr04	irgsp1_rep	three_prime_UTR	21708740	21708842	.	-	.	Parent=Os04t0436400-01
Chr04	irgsp1_rep	three_prime_UTR	21708036	21708141	.	-	.	Parent=Os04t0436400-01
Chr04	irgsp1_rep	three_prime_UTR	21707284	21707408	.	-	.	Parent=Os04t0436400-01
Chr04	irgsp1_rep	three_prime_UTR	21706092	21706551	.	-	.	Parent=Os04t0436400-01
Chr04	irgsp1_rep	mRNA	21718645	21719316	.	+	.	ID=Os04t0436700-00;Name=Os04t0436700-00;Locus_id=Os04g0436700;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);InterPro=Ribonuclease H1%2C N-terminal (IPR011320);TENOR=Os04t0436700-00
Chr04	irgsp1_rep	five_prime_UTR	21718645	21718648	.	+	.	Parent=Os04t0436700-00
Chr04	irgsp1_rep	CDS	21718649	21719152	.	+	0	Parent=Os04t0436700-00
Chr04	irgsp1_rep	three_prime_UTR	21719153	21719316	.	+	.	Parent=Os04t0436700-00
Chr04	irgsp1_rep	mRNA	21725407	21728228	.	-	.	ID=Os04t0436800-01;Name=Os04t0436800-01;Locus_id=Os04g0436800;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK101115 (DDBJ%2C Best hit);ORF_evidence=Q01I62 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J033025G14;Expression=AK101115;TENOR=Os04t0436800-01;KEGG=Os04t0436800-01
Chr04	irgsp1_rep	five_prime_UTR	21728191	21728228	.	-	.	Parent=Os04t0436800-01
Chr04	irgsp1_rep	CDS	21726037	21728190	.	-	0	Parent=Os04t0436800-01
Chr04	irgsp1_rep	three_prime_UTR	21725407	21726036	.	-	.	Parent=Os04t0436800-01
Chr04	irgsp1_rep	mRNA	21728529	21738217	.	-	.	ID=Os04t0436900-01;Name=Os04t0436900-01;Locus_id=Os04g0436900;Note=Hypothetical protein.;Transcript_evidence=AK064607 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-113-A06;Expression=AK064607;TENOR=Os04t0436900-01;KEGG=Os04t0436900-01
Chr04	irgsp1_rep	five_prime_UTR	21738117	21738217	.	-	.	Parent=Os04t0436900-01
Chr04	irgsp1_rep	five_prime_UTR	21735753	21735898	.	-	.	Parent=Os04t0436900-01
Chr04	irgsp1_rep	five_prime_UTR	21732111	21732319	.	-	.	Parent=Os04t0436900-01
Chr04	irgsp1_rep	CDS	21731832	21732110	.	-	0	Parent=Os04t0436900-01
Chr04	irgsp1_rep	three_prime_UTR	21731500	21731831	.	-	.	Parent=Os04t0436900-01
Chr04	irgsp1_rep	three_prime_UTR	21731044	21731302	.	-	.	Parent=Os04t0436900-01
Chr04	irgsp1_rep	three_prime_UTR	21728529	21729911	.	-	.	Parent=Os04t0436900-01
Chr04	irgsp1_rep	mRNA	21733625	21734709	.	+	.	ID=Os04t0437000-01;Name=Os04t0437000-01;Locus_id=Os04g0437000;CGSNL Gene Symbol=NAC79;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 79;Oryzabase Gene Symbol Synonym(s)=ONAC079%2C ONAC79;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 079%2C NAC domain-containing protein 79;Note=No apical meristem (NAM) protein domain containing protein.;Transcript_evidence=AK243585 (DDBJ%2C Best hit);ORF_evidence=Q01I69 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=J100082O14;Oryzabase=15848;TENOR=Os04t0437000-01;KEGG=Os04t0437000-01
Chr04	irgsp1_rep	five_prime_UTR	21733625	21733715	.	+	.	Parent=Os04t0437000-01
Chr04	irgsp1_rep	CDS	21733716	21733875	.	+	0	Parent=Os04t0437000-01
Chr04	irgsp1_rep	CDS	21733957	21734252	.	+	2	Parent=Os04t0437000-01
Chr04	irgsp1_rep	CDS	21734361	21734507	.	+	0	Parent=Os04t0437000-01
Chr04	irgsp1_rep	three_prime_UTR	21734508	21734709	.	+	.	Parent=Os04t0437000-01
Chr04	irgsp1_rep	mRNA	21745662	21747557	.	+	.	ID=Os04t0437300-01;Name=Os04t0437300-01;Locus_id=Os04g0437300;Oryzabase Gene Symbol Synonym(s)=OsPUB38;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 38%2C U-box protein 38;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK121647 (DDBJ%2C Best hit);ORF_evidence=Q01I67 (UniProt);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488);InterPro=U box domain (IPR003613),Armadillo-like helical (IPR011989),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033058N21;Oryzabase=17830;Expression=AK121647;TENOR=Os04t0437300-01;KEGG=Os04t0437300-01
Chr04	irgsp1_rep	five_prime_UTR	21745662	21745971	.	+	.	Parent=Os04t0437300-01
Chr04	irgsp1_rep	five_prime_UTR	21746069	21746157	.	+	.	Parent=Os04t0437300-01
Chr04	irgsp1_rep	CDS	21746158	21747438	.	+	0	Parent=Os04t0437300-01
Chr04	irgsp1_rep	three_prime_UTR	21747439	21747557	.	+	.	Parent=Os04t0437300-01
Chr04	irgsp1_rep	mRNA	21747808	21747880	.	+	.	ID=Os04t0437401-00;Name=Os04t0437401-00;Locus_id=Os04g0437401;Note=Non-protein coding transcript.;Transcript_evidence=X02683 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0437401-00
Chr04	irgsp1_rep	exon	21747808	21747880	.	+	.	Parent=Os04t0437401-00
Chr04	irgsp1_rep	mRNA	21750917	21752359	.	+	.	ID=Os04t0437500-01;Name=Os04t0437500-01;Locus_id=Os04g0437500;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK110861 (DDBJ%2C Best hit);ORF_evidence=Q01I66 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide TPR-1 (IPR001440),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734),Peptidyl-prolyl cis-trans isomerase%2C FKBP-type (IPR023566);NIAS_FLcDNA=002-172-D07;Expression=AK110861;TENOR=Os04t0437500-01;KEGG=Os04t0437500-01
Chr04	irgsp1_rep	five_prime_UTR	21750917	21751023	.	+	.	Parent=Os04t0437500-01
Chr04	irgsp1_rep	CDS	21751024	21752202	.	+	0	Parent=Os04t0437500-01
Chr04	irgsp1_rep	three_prime_UTR	21752203	21752359	.	+	.	Parent=Os04t0437500-01
Chr04	irgsp1_rep	mRNA	21752615	21758576	.	-	.	ID=Os04t0437600-01;Name=Os04t0437600-01;Locus_id=Os04g0437600;Note=Mitogen activated protein kinase kinase kinase 3 domain containing protein.;Transcript_evidence=AK068725 (DDBJ%2C Best hit);ORF_evidence=Q01I65 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013158E14;Expression=AK068725;TENOR=Os04t0437600-01;KEGG=Os04t0437600-01
Chr04	irgsp1_rep	five_prime_UTR	21758440	21758576	.	-	.	Parent=Os04t0437600-01
Chr04	irgsp1_rep	CDS	21758000	21758439	.	-	0	Parent=Os04t0437600-01
Chr04	irgsp1_rep	CDS	21756718	21757248	.	-	1	Parent=Os04t0437600-01
Chr04	irgsp1_rep	CDS	21756313	21756400	.	-	1	Parent=Os04t0437600-01
Chr04	irgsp1_rep	CDS	21756141	21756203	.	-	0	Parent=Os04t0437600-01
Chr04	irgsp1_rep	CDS	21755366	21755526	.	-	0	Parent=Os04t0437600-01
Chr04	irgsp1_rep	CDS	21755205	21755280	.	-	1	Parent=Os04t0437600-01
Chr04	irgsp1_rep	CDS	21754566	21754625	.	-	0	Parent=Os04t0437600-01
Chr04	irgsp1_rep	CDS	21754366	21754473	.	-	0	Parent=Os04t0437600-01
Chr04	irgsp1_rep	CDS	21754058	21754291	.	-	0	Parent=Os04t0437600-01
Chr04	irgsp1_rep	CDS	21753286	21753395	.	-	0	Parent=Os04t0437600-01
Chr04	irgsp1_rep	CDS	21752953	21753208	.	-	1	Parent=Os04t0437600-01
Chr04	irgsp1_rep	three_prime_UTR	21752615	21752952	.	-	.	Parent=Os04t0437600-01
Chr04	irgsp1_rep	mRNA	21752568	21753064	.	-	.	ID=Os04t0437600-02;Name=Os04t0437600-02;Locus_id=Os04g0437600;Note=Similar to H0315A08.7 protein.;Transcript_evidence=AK061622 (DDBJ%2C Best hit);ORF_evidence=Q01I65 (UniProt);NIAS_FLcDNA=001-034-A06;Expression=AK061622;TENOR=Os04t0437600-02;KEGG=Os04t0437600-02
Chr04	irgsp1_rep	five_prime_UTR	21753064	21753064	.	-	.	Parent=Os04t0437600-02
Chr04	irgsp1_rep	CDS	21752953	21753063	.	-	0	Parent=Os04t0437600-02
Chr04	irgsp1_rep	three_prime_UTR	21752568	21752952	.	-	.	Parent=Os04t0437600-02
Chr04	irgsp1_rep	mRNA	21757955	21759431	.	+	.	ID=Os04t0437700-01;Name=Os04t0437700-01;Locus_id=Os04g0437700;Note=Hypothetical protein.;Transcript_evidence=AK111449 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-183-B08;TENOR=Os04t0437700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	21757955	21757955	.	+	.	Parent=Os04t0437700-01
Chr04	irgsp1_rep	CDS	21757956	21758660	.	+	0	Parent=Os04t0437700-01
Chr04	irgsp1_rep	three_prime_UTR	21758661	21759431	.	+	.	Parent=Os04t0437700-01
Chr04	irgsp1_rep	mRNA	21766009	21768900	.	-	.	ID=Os04t0437900-01;Name=Os04t0437900-01;Locus_id=Os04g0437900;Note=Non-protein coding transcript.;Transcript_evidence=AK289098 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090096E23;TENOR=Os04t0437900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	exon	21766009	21768900	.	-	.	Parent=Os04t0437900-01
Chr04	irgsp1_rep	mRNA	21784727	21786221	.	-	.	ID=Os04t0438101-00;Name=Os04t0438101-00;Locus_id=Os04g0438101;Note=Similar to H0315A08.9 protein.;Transcript_evidence=CT836500 (DDBJ%2C Best hit);ORF_evidence=GeneMark;TENOR=Os04t0438101-00;KEGG=Os04t0438101-00
Chr04	irgsp1_rep	five_prime_UTR	21786102	21786221	.	-	.	Parent=Os04t0438101-00
Chr04	irgsp1_rep	CDS	21785901	21786101	.	-	0	Parent=Os04t0438101-00
Chr04	irgsp1_rep	CDS	21785586	21785894	.	-	0	Parent=Os04t0438101-00
Chr04	irgsp1_rep	three_prime_UTR	21785445	21785585	.	-	.	Parent=Os04t0438101-00
Chr04	irgsp1_rep	three_prime_UTR	21784727	21784961	.	-	.	Parent=Os04t0438101-00
Chr04	irgsp1_rep	mRNA	21791510	21792300	.	-	.	ID=Os04t0438200-01;Name=Os04t0438200-01;Locus_id=Os04g0438200;Note=Similar to H0315A08.10 protein.;Transcript_evidence=AK243617 (DDBJ%2C Best hit);ORF_evidence=Q01I57 (UniProt);NIAS_FLcDNA=J100085O08;TENOR=Os04t0438200-01;KEGG=Os04t0438200-01
Chr04	irgsp1_rep	five_prime_UTR	21792220	21792300	.	-	.	Parent=Os04t0438200-01
Chr04	irgsp1_rep	CDS	21791746	21792219	.	-	0	Parent=Os04t0438200-01
Chr04	irgsp1_rep	three_prime_UTR	21791510	21791745	.	-	.	Parent=Os04t0438200-01
Chr04	irgsp1_rep	mRNA	21792887	21795243	.	-	.	ID=Os04t0438300-01;Name=Os04t0438300-01;Locus_id=Os04g0438300;Note=Uncharacterised protein family UPF0090 domain containing protein.;Transcript_evidence=AK066277 (DDBJ%2C Best hit);ORF_evidence=Q01I61 (UniProt);InterPro=Ribosome maturation factor RimP (IPR003728);NIAS_FLcDNA=J013060K17;Expression=AK066277;TENOR=Os04t0438300-01;KEGG=Os04t0438300-01
Chr04	irgsp1_rep	five_prime_UTR	21795185	21795243	.	-	.	Parent=Os04t0438300-01
Chr04	irgsp1_rep	CDS	21794884	21795184	.	-	0	Parent=Os04t0438300-01
Chr04	irgsp1_rep	CDS	21794145	21794227	.	-	2	Parent=Os04t0438300-01
Chr04	irgsp1_rep	CDS	21793856	21794031	.	-	0	Parent=Os04t0438300-01
Chr04	irgsp1_rep	CDS	21793537	21793645	.	-	1	Parent=Os04t0438300-01
Chr04	irgsp1_rep	CDS	21793067	21793381	.	-	0	Parent=Os04t0438300-01
Chr04	irgsp1_rep	three_prime_UTR	21792887	21793066	.	-	.	Parent=Os04t0438300-01
Chr04	irgsp1_rep	mRNA	21795770	21797246	.	+	.	ID=Os04t0438400-01;Name=Os04t0438400-01;Locus_id=Os04g0438400;CGSNL Gene Symbol=PME13;CGSNL Gene Name=PECTIN METHYLESTERASE 13;Oryzabase Gene Symbol Synonym(s)=OsPME13;Oryzabase Gene Name Synonym(s)=pectin methylesterase 13;Note=Similar to Pectin methylesterase-like protein.;Transcript_evidence=AK067975 (DDBJ%2C Best hit);ORF_evidence=Q01I60 (UniProt);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),Pectinesterase%2C active site (IPR018040);NIAS_FLcDNA=J013126G21;Oryzabase=13177;Expression=AK067975;TENOR=Os04t0438400-01;KEGG=Os04t0438400-01
Chr04	irgsp1_rep	five_prime_UTR	21795770	21795771	.	+	.	Parent=Os04t0438400-01
Chr04	irgsp1_rep	CDS	21795772	21796905	.	+	0	Parent=Os04t0438400-01
Chr04	irgsp1_rep	three_prime_UTR	21796906	21797246	.	+	.	Parent=Os04t0438400-01
Chr04	irgsp1_rep	mRNA	21799231	21801625	.	-	.	ID=Os04t0438500-01;Name=Os04t0438500-01;Locus_id=Os04g0438500;Note=Similar to H0315A08.13 protein.;Transcript_evidence=AK068396 (DDBJ%2C Best hit);ORF_evidence=Q01I58 (UniProt);InterPro=Domain of unknown function DUF218 (IPR003848),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J013149D19;Expression=AK068396;TENOR=Os04t0438500-01;KEGG=Os04t0438500-01
Chr04	irgsp1_rep	five_prime_UTR	21801294	21801625	.	-	.	Parent=Os04t0438500-01
Chr04	irgsp1_rep	CDS	21800714	21801293	.	-	0	Parent=Os04t0438500-01
Chr04	irgsp1_rep	CDS	21799990	21800114	.	-	2	Parent=Os04t0438500-01
Chr04	irgsp1_rep	CDS	21799521	21799841	.	-	0	Parent=Os04t0438500-01
Chr04	irgsp1_rep	three_prime_UTR	21799231	21799520	.	-	.	Parent=Os04t0438500-01
Chr04	irgsp1_rep	mRNA	21812159	21816137	.	-	.	ID=Os04t0438600-01;Name=Os04t0438600-01;Locus_id=Os04g0438600;Note=Glycolipid transfer protein%2C GLTP domain containing protein.;Transcript_evidence=AK065524 (DDBJ%2C Best hit);ORF_evidence=Q01K83 (UniProt);GO=Biological Process: glycolipid transport (GO:0046836),Cellular Component: cytoplasm (GO:0005737),Molecular Function: glycolipid transporter activity (GO:0017089),Molecular Function: glycolipid binding (GO:0051861);InterPro=Glycolipid transfer protein domain (IPR014830);NIAS_FLcDNA=J013031N02;Expression=AK065524;TENOR=Os04t0438600-01;KEGG=Os04t0438600-01
Chr04	irgsp1_rep	five_prime_UTR	21815978	21816137	.	-	.	Parent=Os04t0438600-01
Chr04	irgsp1_rep	CDS	21815620	21815977	.	-	0	Parent=Os04t0438600-01
Chr04	irgsp1_rep	CDS	21815271	21815326	.	-	2	Parent=Os04t0438600-01
Chr04	irgsp1_rep	CDS	21813178	21813308	.	-	0	Parent=Os04t0438600-01
Chr04	irgsp1_rep	CDS	21812938	21812983	.	-	1	Parent=Os04t0438600-01
Chr04	irgsp1_rep	three_prime_UTR	21812876	21812937	.	-	.	Parent=Os04t0438600-01
Chr04	irgsp1_rep	three_prime_UTR	21812630	21812773	.	-	.	Parent=Os04t0438600-01
Chr04	irgsp1_rep	three_prime_UTR	21812159	21812534	.	-	.	Parent=Os04t0438600-01
Chr04	irgsp1_rep	mRNA	21814719	21815195	.	+	.	ID=Os04t0438651-00;Name=Os04t0438651-00;Locus_id=Os04g0438651;Note=Non-protein coding transcript.;Transcript_evidence=CU405757 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os04t0438651-00
Chr04	irgsp1_rep	exon	21814719	21815195	.	+	.	Parent=Os04t0438651-00
Chr04	irgsp1_rep	mRNA	21818180	21823704	.	-	.	ID=Os04t0438700-01;Name=Os04t0438700-01;Locus_id=Os04g0438700;CGSNL Gene Symbol=C3H28;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 28;Oryzabase Gene Symbol Synonym(s)=OsC3H28%2C DLN112%2C DLN112a%2C DLN112b%2C OsDLN112%2C OsDLN112a%2C OsDLN112b;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 28%2C DLN repressor 112%2C DLN motif protein 112;Note=Similar to Muscleblind-like protein.;Transcript_evidence=AK060634 (DDBJ%2C Best hit);ORF_evidence=Q01K82 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=001-027-B10;Oryzabase=8592;Expression=AK060634;TENOR=Os04t0438700-01;KEGG=Os04t0438700-01
Chr04	irgsp1_rep	five_prime_UTR	21823665	21823704	.	-	.	Parent=Os04t0438700-01
Chr04	irgsp1_rep	CDS	21823255	21823664	.	-	0	Parent=Os04t0438700-01
Chr04	irgsp1_rep	CDS	21823063	21823158	.	-	1	Parent=Os04t0438700-01
Chr04	irgsp1_rep	CDS	21821667	21821712	.	-	1	Parent=Os04t0438700-01
Chr04	irgsp1_rep	CDS	21821188	21821280	.	-	0	Parent=Os04t0438700-01
Chr04	irgsp1_rep	CDS	21820577	21820693	.	-	0	Parent=Os04t0438700-01
Chr04	irgsp1_rep	CDS	21819942	21820017	.	-	0	Parent=Os04t0438700-01
Chr04	irgsp1_rep	CDS	21819674	21819768	.	-	2	Parent=Os04t0438700-01
Chr04	irgsp1_rep	CDS	21819481	21819588	.	-	0	Parent=Os04t0438700-01
Chr04	irgsp1_rep	three_prime_UTR	21819480	21819480	.	-	.	Parent=Os04t0438700-01
Chr04	irgsp1_rep	three_prime_UTR	21818180	21818461	.	-	.	Parent=Os04t0438700-01
Chr04	irgsp1_rep	mRNA	21826905	21830399	.	-	.	ID=Os04t0438900-00;Name=Os04t0438900-00;Locus_id=Os04g0438900;Note=Conserved hypothetical protein.;Transcript_evidence=BT064731 (DDBJ);ORF_evidence=Q7XQH4 (UniProt);TENOR=Os04t0438900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	21829814	21830399	.	-	0	Parent=Os04t0438900-00
Chr04	irgsp1_rep	CDS	21827097	21827512	.	-	2	Parent=Os04t0438900-00
Chr04	irgsp1_rep	three_prime_UTR	21826905	21827096	.	-	.	Parent=Os04t0438900-00
Chr04	irgsp1_rep	mRNA	21842292	21848134	.	+	.	ID=Os04t0439100-01;Name=Os04t0439100-01;Locus_id=Os04g0439100;Note=Similar to H0525C06.4 protein.;Transcript_evidence=AK067590 (DDBJ%2C Best hit);ORF_evidence=Q01K80 (UniProt);InterPro=T-complex 11 (IPR008862);NIAS_FLcDNA=J013112G22;Expression=AK067590;TENOR=Os04t0439100-01;KEGG=Os04t0439100-01
Chr04	irgsp1_rep	five_prime_UTR	21842292	21842488	.	+	.	Parent=Os04t0439100-01
Chr04	irgsp1_rep	CDS	21842489	21842665	.	+	0	Parent=Os04t0439100-01
Chr04	irgsp1_rep	CDS	21843885	21844006	.	+	0	Parent=Os04t0439100-01
Chr04	irgsp1_rep	CDS	21844103	21844547	.	+	1	Parent=Os04t0439100-01
Chr04	irgsp1_rep	CDS	21844637	21844743	.	+	0	Parent=Os04t0439100-01
Chr04	irgsp1_rep	CDS	21844848	21845715	.	+	1	Parent=Os04t0439100-01
Chr04	irgsp1_rep	CDS	21847486	21847512	.	+	0	Parent=Os04t0439100-01
Chr04	irgsp1_rep	three_prime_UTR	21847513	21848134	.	+	.	Parent=Os04t0439100-01
Chr04	irgsp1_rep	mRNA	21844239	21848089	.	+	.	ID=Os04t0439100-02;Name=Os04t0439100-02;Locus_id=Os04g0439100;Note=T-complex 11 family protein.;Transcript_evidence=AK120173 (DDBJ%2C Best hit);ORF_evidence=Q01K80 (UniProt);InterPro=T-complex 11 (IPR008862);NIAS_FLcDNA=J013032P11;Expression=AK120173;TENOR=Os04t0439100-02;KEGG=Os04t0439100-02
Chr04	irgsp1_rep	CDS	21844239	21844547	.	+	0	Parent=Os04t0439100-02
Chr04	irgsp1_rep	CDS	21844637	21844743	.	+	0	Parent=Os04t0439100-02
Chr04	irgsp1_rep	CDS	21844848	21846180	.	+	1	Parent=Os04t0439100-02
Chr04	irgsp1_rep	CDS	21846288	21846515	.	+	0	Parent=Os04t0439100-02
Chr04	irgsp1_rep	CDS	21846607	21846837	.	+	0	Parent=Os04t0439100-02
Chr04	irgsp1_rep	CDS	21846934	21847193	.	+	0	Parent=Os04t0439100-02
Chr04	irgsp1_rep	CDS	21847307	21847769	.	+	1	Parent=Os04t0439100-02
Chr04	irgsp1_rep	three_prime_UTR	21847770	21848089	.	+	.	Parent=Os04t0439100-02
Chr04	irgsp1_rep	mRNA	21844512	21848066	.	+	.	ID=Os04t0439100-03;Name=Os04t0439100-03;Locus_id=Os04g0439100;Note=Similar to H0525C06.4 protein.;Transcript_evidence=AK062183 (DDBJ%2C Best hit);ORF_evidence=Q01K80 (UniProt);InterPro=T-complex 11 (IPR008862);NIAS_FLcDNA=001-046-D12;Expression=AK062183;TENOR=Os04t0439100-03;KEGG=Os04t0439100-03
Chr04	irgsp1_rep	CDS	21844512	21844547	.	+	0	Parent=Os04t0439100-03
Chr04	irgsp1_rep	CDS	21844637	21844743	.	+	0	Parent=Os04t0439100-03
Chr04	irgsp1_rep	CDS	21844848	21846180	.	+	1	Parent=Os04t0439100-03
Chr04	irgsp1_rep	CDS	21846288	21846515	.	+	0	Parent=Os04t0439100-03
Chr04	irgsp1_rep	CDS	21846607	21846837	.	+	0	Parent=Os04t0439100-03
Chr04	irgsp1_rep	CDS	21846934	21847193	.	+	0	Parent=Os04t0439100-03
Chr04	irgsp1_rep	CDS	21847307	21847769	.	+	1	Parent=Os04t0439100-03
Chr04	irgsp1_rep	three_prime_UTR	21847770	21848066	.	+	.	Parent=Os04t0439100-03
Chr04	irgsp1_rep	mRNA	21853482	21856316	.	+	.	ID=Os04t0439200-00;Name=Os04t0439200-00;Locus_id=Os04g0439200;Note=T-complex 11 family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01K79 (UniProt);InterPro=T-complex 11 (IPR008862);TENOR=Os04t0439200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	21853482	21854702	.	+	0	Parent=Os04t0439200-00
Chr04	irgsp1_rep	CDS	21854809	21855036	.	+	0	Parent=Os04t0439200-00
Chr04	irgsp1_rep	CDS	21855130	21855360	.	+	0	Parent=Os04t0439200-00
Chr04	irgsp1_rep	CDS	21855464	21855726	.	+	0	Parent=Os04t0439200-00
Chr04	irgsp1_rep	CDS	21855845	21856316	.	+	1	Parent=Os04t0439200-00
Chr04	irgsp1_rep	mRNA	21856942	21858679	.	-	.	ID=Os04t0439300-01;Name=Os04t0439300-01;Locus_id=Os04g0439300;Note=Similar to H0525C06.6 protein.;Transcript_evidence=AK242494 (DDBJ%2C Best hit);ORF_evidence=Q01K78 (UniProt);NIAS_FLcDNA=J080307K04;TENOR=Os04t0439300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	21858390	21858679	.	-	.	Parent=Os04t0439300-01
Chr04	irgsp1_rep	CDS	21858168	21858389	.	-	0	Parent=Os04t0439300-01
Chr04	irgsp1_rep	CDS	21858001	21858089	.	-	0	Parent=Os04t0439300-01
Chr04	irgsp1_rep	CDS	21857289	21857439	.	-	1	Parent=Os04t0439300-01
Chr04	irgsp1_rep	three_prime_UTR	21856942	21857288	.	-	.	Parent=Os04t0439300-01
Chr04	irgsp1_rep	mRNA	21864503	21867815	.	-	.	ID=Os04t0439400-01;Name=Os04t0439400-01;Locus_id=Os04g0439400;Note=Similar to H0525C06.6 protein.;Transcript_evidence=AK101745 (DDBJ%2C Best hit);ORF_evidence=Q01K78 (UniProt);InterPro=WSTF/Acf1/Cbp146 (IPR013136);NIAS_FLcDNA=J033061O13;TENOR=Os04t0439400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	21867590	21867815	.	-	.	Parent=Os04t0439400-01
Chr04	irgsp1_rep	five_prime_UTR	21866563	21866569	.	-	.	Parent=Os04t0439400-01
Chr04	irgsp1_rep	CDS	21866450	21866562	.	-	0	Parent=Os04t0439400-01
Chr04	irgsp1_rep	CDS	21866140	21866312	.	-	1	Parent=Os04t0439400-01
Chr04	irgsp1_rep	CDS	21865488	21865519	.	-	2	Parent=Os04t0439400-01
Chr04	irgsp1_rep	three_prime_UTR	21865195	21865487	.	-	.	Parent=Os04t0439400-01
Chr04	irgsp1_rep	three_prime_UTR	21865045	21865123	.	-	.	Parent=Os04t0439400-01
Chr04	irgsp1_rep	three_prime_UTR	21864624	21864940	.	-	.	Parent=Os04t0439400-01
Chr04	irgsp1_rep	three_prime_UTR	21864503	21864550	.	-	.	Parent=Os04t0439400-01
Chr04	irgsp1_rep	mRNA	21875562	21878159	.	+	.	ID=Os04t0439501-01;Name=Os04t0439501-01;Locus_id=Os04g0439501;Note=Non-protein coding transcript.;Transcript_evidence=AK288330 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090022I21;TENOR=Os04t0439501-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	exon	21875562	21878159	.	+	.	Parent=Os04t0439501-01
Chr04	irgsp1_rep	mRNA	21878937	21881780	.	-	.	ID=Os04t0439600-01;Name=Os04t0439600-01;Locus_id=Os04g0439600;Oryzabase Gene Symbol Synonym(s)=OsCRR1;Oryzabase Gene Name Synonym(s)=CRINKLY4-RELATED protein 1;Note=Regulator of Chromosome condensation/beta-lactamase-inhibitor protein II domain containing protein.;Transcript_evidence=AK109788 (DDBJ%2C Best hit);ORF_evidence=Q01K77 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Regulator of Chromosome condensation/beta-lactamase-inhibitor protein II (IPR009091),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-147-D03;Oryzabase=10377;Expression=AK109788;TENOR=Os04t0439600-01;KEGG=Os04t0439600-01
Chr04	irgsp1_rep	five_prime_UTR	21881686	21881780	.	-	.	Parent=Os04t0439600-01
Chr04	irgsp1_rep	CDS	21879217	21881685	.	-	0	Parent=Os04t0439600-01
Chr04	irgsp1_rep	three_prime_UTR	21878937	21879216	.	-	.	Parent=Os04t0439600-01
Chr04	irgsp1_rep	mRNA	21886998	21892936	.	-	.	ID=Os04t0439900-01;Name=Os04t0439900-01;Locus_id=Os04g0439900;Note=Similar to Translocon Tic40 precursor.;Transcript_evidence=AK065119 (DDBJ%2C Best hit);ORF_evidence=Q01K76 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Cellular Component: cytoplasm (GO:0005737);InterPro=Heat shock chaperonin-binding (IPR006636),26S proteasome complex ubiquitin receptor%2C subunit Rpn13 (IPR006773);NIAS_FLcDNA=J013001O14;Expression=AK065119;TENOR=Os04t0439900-01;KEGG=Os04t0439900-01
Chr04	irgsp1_rep	five_prime_UTR	21892811	21892936	.	-	.	Parent=Os04t0439900-01
Chr04	irgsp1_rep	CDS	21892618	21892810	.	-	0	Parent=Os04t0439900-01
Chr04	irgsp1_rep	CDS	21891994	21892108	.	-	2	Parent=Os04t0439900-01
Chr04	irgsp1_rep	CDS	21891856	21891913	.	-	1	Parent=Os04t0439900-01
Chr04	irgsp1_rep	CDS	21891751	21891768	.	-	0	Parent=Os04t0439900-01
Chr04	irgsp1_rep	CDS	21890189	21890441	.	-	0	Parent=Os04t0439900-01
Chr04	irgsp1_rep	CDS	21889931	21890049	.	-	2	Parent=Os04t0439900-01
Chr04	irgsp1_rep	CDS	21889794	21889857	.	-	0	Parent=Os04t0439900-01
Chr04	irgsp1_rep	CDS	21889593	21889671	.	-	2	Parent=Os04t0439900-01
Chr04	irgsp1_rep	CDS	21889287	21889327	.	-	1	Parent=Os04t0439900-01
Chr04	irgsp1_rep	CDS	21889148	21889193	.	-	2	Parent=Os04t0439900-01
Chr04	irgsp1_rep	CDS	21888379	21888476	.	-	1	Parent=Os04t0439900-01
Chr04	irgsp1_rep	CDS	21887806	21887909	.	-	2	Parent=Os04t0439900-01
Chr04	irgsp1_rep	CDS	21887683	21887730	.	-	0	Parent=Os04t0439900-01
Chr04	irgsp1_rep	CDS	21887519	21887572	.	-	0	Parent=Os04t0439900-01
Chr04	irgsp1_rep	three_prime_UTR	21886998	21887518	.	-	.	Parent=Os04t0439900-01
Chr04	irgsp1_rep	mRNA	21887118	21892883	.	-	.	ID=Os04t0439900-02;Name=Os04t0439900-02;Locus_id=Os04g0439900;Note=Similar to Translocon Tic40 precursor.;Transcript_evidence=AK062578 (DDBJ%2C Best hit);ORF_evidence=Q01K76 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Cellular Component: cytoplasm (GO:0005737);InterPro=Heat shock chaperonin-binding (IPR006636),26S proteasome complex ubiquitin receptor%2C subunit Rpn13 (IPR006773);NIAS_FLcDNA=001-047-H07;TENOR=Os04t0439900-02
Chr04	irgsp1_rep	five_prime_UTR	21892811	21892883	.	-	.	Parent=Os04t0439900-02
Chr04	irgsp1_rep	CDS	21892618	21892810	.	-	0	Parent=Os04t0439900-02
Chr04	irgsp1_rep	CDS	21891994	21892108	.	-	2	Parent=Os04t0439900-02
Chr04	irgsp1_rep	CDS	21891856	21891913	.	-	1	Parent=Os04t0439900-02
Chr04	irgsp1_rep	CDS	21891751	21891768	.	-	0	Parent=Os04t0439900-02
Chr04	irgsp1_rep	CDS	21890189	21890441	.	-	0	Parent=Os04t0439900-02
Chr04	irgsp1_rep	CDS	21889931	21890049	.	-	2	Parent=Os04t0439900-02
Chr04	irgsp1_rep	CDS	21889794	21889857	.	-	0	Parent=Os04t0439900-02
Chr04	irgsp1_rep	CDS	21889593	21889671	.	-	2	Parent=Os04t0439900-02
Chr04	irgsp1_rep	CDS	21889287	21889327	.	-	1	Parent=Os04t0439900-02
Chr04	irgsp1_rep	CDS	21889148	21889193	.	-	2	Parent=Os04t0439900-02
Chr04	irgsp1_rep	CDS	21888379	21888476	.	-	1	Parent=Os04t0439900-02
Chr04	irgsp1_rep	CDS	21887806	21887909	.	-	2	Parent=Os04t0439900-02
Chr04	irgsp1_rep	CDS	21887683	21887730	.	-	0	Parent=Os04t0439900-02
Chr04	irgsp1_rep	CDS	21887519	21887572	.	-	0	Parent=Os04t0439900-02
Chr04	irgsp1_rep	three_prime_UTR	21887118	21887518	.	-	.	Parent=Os04t0439900-02
Chr04	irgsp1_rep	mRNA	21887118	21892846	.	-	.	ID=Os04t0439900-03;Name=Os04t0439900-03;Locus_id=Os04g0439900;Note=Similar to Translocon Tic40 precursor.;Transcript_evidence=AK098870 (DDBJ%2C Best hit);ORF_evidence=Q01K76 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Cellular Component: cytoplasm (GO:0005737);InterPro=Heat shock chaperonin-binding (IPR006636),26S proteasome complex ubiquitin receptor%2C subunit Rpn13 (IPR006773);NIAS_FLcDNA=J013001A22;TENOR=Os04t0439900-03
Chr04	irgsp1_rep	five_prime_UTR	21892811	21892846	.	-	.	Parent=Os04t0439900-03
Chr04	irgsp1_rep	CDS	21892618	21892810	.	-	0	Parent=Os04t0439900-03
Chr04	irgsp1_rep	CDS	21891994	21892108	.	-	2	Parent=Os04t0439900-03
Chr04	irgsp1_rep	CDS	21891856	21891913	.	-	1	Parent=Os04t0439900-03
Chr04	irgsp1_rep	CDS	21891751	21891768	.	-	0	Parent=Os04t0439900-03
Chr04	irgsp1_rep	CDS	21890189	21890441	.	-	0	Parent=Os04t0439900-03
Chr04	irgsp1_rep	CDS	21889931	21890049	.	-	2	Parent=Os04t0439900-03
Chr04	irgsp1_rep	CDS	21889794	21889857	.	-	0	Parent=Os04t0439900-03
Chr04	irgsp1_rep	CDS	21889593	21889671	.	-	2	Parent=Os04t0439900-03
Chr04	irgsp1_rep	CDS	21889287	21889327	.	-	1	Parent=Os04t0439900-03
Chr04	irgsp1_rep	CDS	21889148	21889193	.	-	2	Parent=Os04t0439900-03
Chr04	irgsp1_rep	CDS	21888379	21888476	.	-	1	Parent=Os04t0439900-03
Chr04	irgsp1_rep	CDS	21887806	21887909	.	-	2	Parent=Os04t0439900-03
Chr04	irgsp1_rep	CDS	21887683	21887730	.	-	0	Parent=Os04t0439900-03
Chr04	irgsp1_rep	CDS	21887519	21887572	.	-	0	Parent=Os04t0439900-03
Chr04	irgsp1_rep	three_prime_UTR	21887118	21887518	.	-	.	Parent=Os04t0439900-03
Chr04	irgsp1_rep	mRNA	21893405	21896405	.	-	.	ID=Os04t0440000-01;Name=Os04t0440000-01;Locus_id=Os04g0440000;Note=Protein of unknown function DUF2040%2C coiled-coil domain containing protein.;Transcript_evidence=AK102407 (DDBJ%2C Best hit),AK101691 (DDBJ%2C Best hit);ORF_evidence=Q01K75 (UniProt);InterPro=Domain of unknown function DUF2040 (IPR018612);NIAS_FLcDNA=J033092M02,J033059K10;Expression=AK102407;TENOR=Os04t0440000-01;KEGG=Os04t0440000-01
Chr04	irgsp1_rep	five_prime_UTR	21896148	21896405	.	-	.	Parent=Os04t0440000-01
Chr04	irgsp1_rep	CDS	21895980	21896147	.	-	0	Parent=Os04t0440000-01
Chr04	irgsp1_rep	CDS	21895739	21895861	.	-	0	Parent=Os04t0440000-01
Chr04	irgsp1_rep	CDS	21895063	21895281	.	-	0	Parent=Os04t0440000-01
Chr04	irgsp1_rep	CDS	21893744	21894223	.	-	0	Parent=Os04t0440000-01
Chr04	irgsp1_rep	three_prime_UTR	21893405	21893743	.	-	.	Parent=Os04t0440000-01
Chr04	irgsp1_rep	mRNA	21893373	21895793	.	-	.	ID=Os04t0440000-03;Name=Os04t0440000-03;Locus_id=Os04g0440000;Note=Similar to H0525C06.9 protein.;Transcript_evidence=AK073064 (DDBJ%2C Best hit);ORF_evidence=Q01K75 (UniProt);InterPro=Domain of unknown function DUF2040 (IPR018612);NIAS_FLcDNA=J033021J15;Expression=AK073064;TENOR=Os04t0440000-03;KEGG=Os04t0440000-03
Chr04	irgsp1_rep	five_prime_UTR	21895793	21895793	.	-	.	Parent=Os04t0440000-03
Chr04	irgsp1_rep	CDS	21895739	21895792	.	-	0	Parent=Os04t0440000-03
Chr04	irgsp1_rep	CDS	21895063	21895281	.	-	0	Parent=Os04t0440000-03
Chr04	irgsp1_rep	CDS	21893744	21894223	.	-	0	Parent=Os04t0440000-03
Chr04	irgsp1_rep	three_prime_UTR	21893373	21893743	.	-	.	Parent=Os04t0440000-03
Chr04	irgsp1_rep	mRNA	21897086	21904760	.	-	.	ID=Os04t0440100-01;Name=Os04t0440100-01;Locus_id=Os04g0440100;Oryzabase Gene Symbol Synonym(s)=UPF3;Oryzabase Gene Name Synonym(s)=Nonsense-mediated decay UPF3;Note=Similar to H0525C06.10 protein.;Transcript_evidence=AK105415 (DDBJ%2C Best hit);ORF_evidence=Q01K74 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=Regulator of nonsense-mediated decay%2C UPF3 (IPR005120),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-123-H10;Oryzabase=21368;TENOR=Os04t0440100-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	21904449	21904760	.	-	.	Parent=Os04t0440100-01
Chr04	irgsp1_rep	CDS	21904288	21904448	.	-	0	Parent=Os04t0440100-01
Chr04	irgsp1_rep	CDS	21903221	21903327	.	-	1	Parent=Os04t0440100-01
Chr04	irgsp1_rep	CDS	21901975	21902070	.	-	2	Parent=Os04t0440100-01
Chr04	irgsp1_rep	CDS	21901769	21901867	.	-	2	Parent=Os04t0440100-01
Chr04	irgsp1_rep	CDS	21901594	21901673	.	-	2	Parent=Os04t0440100-01
Chr04	irgsp1_rep	CDS	21901401	21901505	.	-	0	Parent=Os04t0440100-01
Chr04	irgsp1_rep	CDS	21900503	21900587	.	-	0	Parent=Os04t0440100-01
Chr04	irgsp1_rep	CDS	21899614	21899711	.	-	2	Parent=Os04t0440100-01
Chr04	irgsp1_rep	CDS	21899066	21899534	.	-	0	Parent=Os04t0440100-01
Chr04	irgsp1_rep	CDS	21898389	21898454	.	-	2	Parent=Os04t0440100-01
Chr04	irgsp1_rep	CDS	21898167	21898285	.	-	2	Parent=Os04t0440100-01
Chr04	irgsp1_rep	CDS	21898015	21898053	.	-	0	Parent=Os04t0440100-01
Chr04	irgsp1_rep	three_prime_UTR	21898000	21898014	.	-	.	Parent=Os04t0440100-01
Chr04	irgsp1_rep	three_prime_UTR	21897086	21897875	.	-	.	Parent=Os04t0440100-01
Chr04	irgsp1_rep	mRNA	21897102	21904737	.	-	.	ID=Os04t0440100-02;Name=Os04t0440100-02;Locus_id=Os04g0440100;Oryzabase Gene Symbol Synonym(s)=UPF3;Oryzabase Gene Name Synonym(s)=Nonsense-mediated decay UPF3;Note=Similar to H0525C06.10 protein.;Transcript_evidence=AK101324 (DDBJ%2C Best hit);ORF_evidence=Q01K74 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=Regulator of nonsense-mediated decay%2C UPF3 (IPR005120),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033034F18;Oryzabase=21368;TENOR=Os04t0440100-02
Chr04	irgsp1_rep	five_prime_UTR	21904449	21904737	.	-	.	Parent=Os04t0440100-02
Chr04	irgsp1_rep	CDS	21904288	21904448	.	-	0	Parent=Os04t0440100-02
Chr04	irgsp1_rep	CDS	21903221	21903327	.	-	1	Parent=Os04t0440100-02
Chr04	irgsp1_rep	CDS	21901975	21902070	.	-	2	Parent=Os04t0440100-02
Chr04	irgsp1_rep	CDS	21901769	21901867	.	-	2	Parent=Os04t0440100-02
Chr04	irgsp1_rep	CDS	21901594	21901673	.	-	2	Parent=Os04t0440100-02
Chr04	irgsp1_rep	CDS	21901401	21901505	.	-	0	Parent=Os04t0440100-02
Chr04	irgsp1_rep	CDS	21900503	21900587	.	-	0	Parent=Os04t0440100-02
Chr04	irgsp1_rep	CDS	21899614	21899711	.	-	2	Parent=Os04t0440100-02
Chr04	irgsp1_rep	CDS	21899066	21899534	.	-	0	Parent=Os04t0440100-02
Chr04	irgsp1_rep	CDS	21898389	21898454	.	-	2	Parent=Os04t0440100-02
Chr04	irgsp1_rep	CDS	21898167	21898285	.	-	2	Parent=Os04t0440100-02
Chr04	irgsp1_rep	CDS	21898015	21898053	.	-	0	Parent=Os04t0440100-02
Chr04	irgsp1_rep	three_prime_UTR	21898000	21898014	.	-	.	Parent=Os04t0440100-02
Chr04	irgsp1_rep	three_prime_UTR	21897102	21897875	.	-	.	Parent=Os04t0440100-02
Chr04	irgsp1_rep	mRNA	21912154	21914363	.	-	.	ID=Os04t0440300-01;Name=Os04t0440300-01;Locus_id=Os04g0440300;Oryzabase Gene Symbol Synonym(s)=OsFbox211%2C Os_F0331;Oryzabase Gene Name Synonym(s)=F-box protein 211;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK071669 (DDBJ%2C Best hit);ORF_evidence=Q7XQG1 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023107F10;Oryzabase=16998;Expression=AK071669;TENOR=Os04t0440300-01;KEGG=Os04t0440300-01
Chr04	irgsp1_rep	five_prime_UTR	21914362	21914363	.	-	.	Parent=Os04t0440300-01
Chr04	irgsp1_rep	CDS	21914270	21914361	.	-	0	Parent=Os04t0440300-01
Chr04	irgsp1_rep	CDS	21912928	21913810	.	-	1	Parent=Os04t0440300-01
Chr04	irgsp1_rep	CDS	21912698	21912850	.	-	0	Parent=Os04t0440300-01
Chr04	irgsp1_rep	CDS	21912414	21912611	.	-	0	Parent=Os04t0440300-01
Chr04	irgsp1_rep	three_prime_UTR	21912154	21912413	.	-	.	Parent=Os04t0440300-01
Chr04	irgsp1_rep	mRNA	21929866	21932000	.	-	.	ID=Os04t0440400-00;Name=Os04t0440400-00;Locus_id=Os04g0440400;Oryzabase Gene Symbol Synonym(s)=OsFbox212%2C Os_F0238;Oryzabase Gene Name Synonym(s)=F-box protein 212;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=BT036070 (DDBJ);ORF_evidence=B9FCI6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=16999;TENOR=Os04t0440400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	21931095	21932000	.	-	0	Parent=Os04t0440400-00
Chr04	irgsp1_rep	three_prime_UTR	21931035	21931094	.	-	.	Parent=Os04t0440400-00
Chr04	irgsp1_rep	three_prime_UTR	21930373	21930506	.	-	.	Parent=Os04t0440400-00
Chr04	irgsp1_rep	three_prime_UTR	21929866	21930284	.	-	.	Parent=Os04t0440400-00
Chr04	irgsp1_rep	mRNA	21966332	21969820	.	+	.	ID=Os04t0441600-00;Name=Os04t0441600-00;Locus_id=Os04g0441600;Note=Similar to protein AIG1.;Transcript_evidence=AK364676 (DDBJ);ORF_evidence=NP_001148533.1 (RefSeq);GO=Molecular Function: GTP binding (GO:0005525);InterPro=AIG1 (IPR006703);TENOR=Os04t0441600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	21966332	21966881	.	+	0	Parent=Os04t0441600-00
Chr04	irgsp1_rep	CDS	21967375	21967649	.	+	2	Parent=Os04t0441600-00
Chr04	irgsp1_rep	CDS	21967875	21968039	.	+	0	Parent=Os04t0441600-00
Chr04	irgsp1_rep	CDS	21969542	21969568	.	+	0	Parent=Os04t0441600-00
Chr04	irgsp1_rep	three_prime_UTR	21969569	21969820	.	+	.	Parent=Os04t0441600-00
Chr04	irgsp1_rep	mRNA	21966692	21969659	.	-	.	ID=Os04t0441650-00;Name=Os04t0441650-00;Locus_id=Os04g0441650;Note=Non-protein coding transcript.;Transcript_evidence=BT017369 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0441650-00
Chr04	irgsp1_rep	exon	21969426	21969659	.	-	.	Parent=Os04t0441650-00
Chr04	irgsp1_rep	exon	21967850	21968095	.	-	.	Parent=Os04t0441650-00
Chr04	irgsp1_rep	exon	21967349	21967623	.	-	.	Parent=Os04t0441650-00
Chr04	irgsp1_rep	exon	21966692	21966846	.	-	.	Parent=Os04t0441650-00
Chr04	irgsp1_rep	mRNA	21970308	21972359	.	+	.	ID=Os04t0441700-01;Name=Os04t0441700-01;Locus_id=Os04g0441700;Note=Hypothetical protein.;Transcript_evidence=AK072763 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023139P09;Expression=AK072763;TENOR=Os04t0441700-01;KEGG=Os04t0441700-01
Chr04	irgsp1_rep	five_prime_UTR	21970308	21970414	.	+	.	Parent=Os04t0441700-01
Chr04	irgsp1_rep	five_prime_UTR	21971018	21971220	.	+	.	Parent=Os04t0441700-01
Chr04	irgsp1_rep	CDS	21971221	21972030	.	+	0	Parent=Os04t0441700-01
Chr04	irgsp1_rep	three_prime_UTR	21972031	21972359	.	+	.	Parent=Os04t0441700-01
Chr04	irgsp1_rep	mRNA	21970849	21975757	.	-	.	ID=Os04t0441800-01;Name=Os04t0441800-01;Locus_id=Os04g0441800;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=TGF-beta receptor%2C type I/II extracellular region family protein.;Transcript_evidence=AK064785 (DDBJ%2C Best hit);ORF_evidence=NP_176183.1 (RefSeq);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J013000B16;Oryzabase=23652;TENOR=Os04t0441800-01;KEGG=Os04t0441800-01
Chr04	irgsp1_rep	five_prime_UTR	21975650	21975757	.	-	.	Parent=Os04t0441800-01
Chr04	irgsp1_rep	CDS	21975532	21975649	.	-	0	Parent=Os04t0441800-01
Chr04	irgsp1_rep	CDS	21975196	21975413	.	-	2	Parent=Os04t0441800-01
Chr04	irgsp1_rep	CDS	21973541	21974002	.	-	0	Parent=Os04t0441800-01
Chr04	irgsp1_rep	CDS	21972027	21972154	.	-	0	Parent=Os04t0441800-01
Chr04	irgsp1_rep	CDS	21971014	21971923	.	-	1	Parent=Os04t0441800-01
Chr04	irgsp1_rep	three_prime_UTR	21970849	21971013	.	-	.	Parent=Os04t0441800-01
Chr04	irgsp1_rep	mRNA	21989594	21995101	.	-	.	ID=Os04t0441900-01;Name=Os04t0441900-01;Locus_id=Os04g0441900;Note=Cleft lip and palate transmembrane 1 family protein.;Transcript_evidence=AK067882 (DDBJ%2C Best hit);ORF_evidence=NP_196467.1 (RefSeq);InterPro=Cleft lip and palate transmembrane 1 (IPR008429);NIAS_FLcDNA=J013122N14;Expression=AK067882;TENOR=Os04t0441900-01;KEGG=Os04t0441900-01
Chr04	irgsp1_rep	five_prime_UTR	21995082	21995101	.	-	.	Parent=Os04t0441900-01
Chr04	irgsp1_rep	CDS	21995010	21995081	.	-	0	Parent=Os04t0441900-01
Chr04	irgsp1_rep	CDS	21994786	21994953	.	-	0	Parent=Os04t0441900-01
Chr04	irgsp1_rep	CDS	21993645	21993791	.	-	0	Parent=Os04t0441900-01
Chr04	irgsp1_rep	CDS	21993450	21993564	.	-	0	Parent=Os04t0441900-01
Chr04	irgsp1_rep	CDS	21993264	21993355	.	-	2	Parent=Os04t0441900-01
Chr04	irgsp1_rep	CDS	21993069	21993166	.	-	0	Parent=Os04t0441900-01
Chr04	irgsp1_rep	CDS	21992368	21992405	.	-	1	Parent=Os04t0441900-01
Chr04	irgsp1_rep	CDS	21992012	21992247	.	-	2	Parent=Os04t0441900-01
Chr04	irgsp1_rep	CDS	21991624	21991717	.	-	0	Parent=Os04t0441900-01
Chr04	irgsp1_rep	CDS	21991326	21991516	.	-	2	Parent=Os04t0441900-01
Chr04	irgsp1_rep	CDS	21990513	21990732	.	-	0	Parent=Os04t0441900-01
Chr04	irgsp1_rep	CDS	21990262	21990429	.	-	2	Parent=Os04t0441900-01
Chr04	irgsp1_rep	CDS	21989969	21990168	.	-	2	Parent=Os04t0441900-01
Chr04	irgsp1_rep	three_prime_UTR	21989594	21989968	.	-	.	Parent=Os04t0441900-01
Chr04	irgsp1_rep	mRNA	21989599	21995086	.	-	.	ID=Os04t0441900-02;Name=Os04t0441900-02;Locus_id=Os04g0441900;Note=Similar to transmembrane CLPTM1 family protein.;Transcript_evidence=AK070853 (DDBJ%2C Best hit);ORF_evidence=NP_196467.1 (RefSeq);InterPro=Cleft lip and palate transmembrane 1 (IPR008429);NIAS_FLcDNA=J023064G12;Expression=AK070853;TENOR=Os04t0441900-02;KEGG=Os04t0441900-02
Chr04	irgsp1_rep	five_prime_UTR	21995011	21995086	.	-	.	Parent=Os04t0441900-02
Chr04	irgsp1_rep	CDS	21994786	21995010	.	-	0	Parent=Os04t0441900-02
Chr04	irgsp1_rep	CDS	21993645	21993791	.	-	0	Parent=Os04t0441900-02
Chr04	irgsp1_rep	CDS	21993450	21993564	.	-	0	Parent=Os04t0441900-02
Chr04	irgsp1_rep	CDS	21993264	21993355	.	-	2	Parent=Os04t0441900-02
Chr04	irgsp1_rep	CDS	21993069	21993166	.	-	0	Parent=Os04t0441900-02
Chr04	irgsp1_rep	CDS	21992368	21992405	.	-	1	Parent=Os04t0441900-02
Chr04	irgsp1_rep	CDS	21992012	21992247	.	-	2	Parent=Os04t0441900-02
Chr04	irgsp1_rep	CDS	21991624	21991717	.	-	0	Parent=Os04t0441900-02
Chr04	irgsp1_rep	CDS	21991326	21991516	.	-	2	Parent=Os04t0441900-02
Chr04	irgsp1_rep	CDS	21990513	21990732	.	-	0	Parent=Os04t0441900-02
Chr04	irgsp1_rep	CDS	21990262	21990429	.	-	2	Parent=Os04t0441900-02
Chr04	irgsp1_rep	CDS	21989969	21990168	.	-	2	Parent=Os04t0441900-02
Chr04	irgsp1_rep	three_prime_UTR	21989599	21989968	.	-	.	Parent=Os04t0441900-02
Chr04	irgsp1_rep	mRNA	21989740	21993123	.	-	.	ID=Os04t0441900-03;Name=Os04t0441900-03;Locus_id=Os04g0441900;Note=Similar to predicted protein.;Transcript_evidence=AK059457 (DDBJ%2C Best hit);ORF_evidence=NP_196467.1 (RefSeq);InterPro=Cleft lip and palate transmembrane 1 (IPR008429);NIAS_FLcDNA=001-028-C05;Expression=AK059457;TENOR=Os04t0441900-03;KEGG=Os04t0441900-03
Chr04	irgsp1_rep	five_prime_UTR	21993122	21993123	.	-	.	Parent=Os04t0441900-03
Chr04	irgsp1_rep	CDS	21993069	21993121	.	-	0	Parent=Os04t0441900-03
Chr04	irgsp1_rep	CDS	21992368	21992405	.	-	1	Parent=Os04t0441900-03
Chr04	irgsp1_rep	CDS	21992012	21992247	.	-	2	Parent=Os04t0441900-03
Chr04	irgsp1_rep	CDS	21991624	21991717	.	-	0	Parent=Os04t0441900-03
Chr04	irgsp1_rep	CDS	21991326	21991516	.	-	2	Parent=Os04t0441900-03
Chr04	irgsp1_rep	CDS	21990513	21990732	.	-	0	Parent=Os04t0441900-03
Chr04	irgsp1_rep	CDS	21990262	21990429	.	-	2	Parent=Os04t0441900-03
Chr04	irgsp1_rep	CDS	21989969	21990168	.	-	2	Parent=Os04t0441900-03
Chr04	irgsp1_rep	three_prime_UTR	21989740	21989968	.	-	.	Parent=Os04t0441900-03
Chr04	irgsp1_rep	mRNA	22006405	22012018	.	+	.	ID=Os04t0442000-01;Name=Os04t0442000-01;Locus_id=Os04g0442000;CGSNL Gene Symbol=ARF9;CGSNL Gene Name=AUXIN RESPONSE FACTOR 9;Oryzabase Gene Symbol Synonym(s)=OsARF9;Oryzabase Gene Name Synonym(s)=auxin response factor-9%2C auxin response factor 9;Note=Similar to Auxin response factor 2 (ARF1-binding protein) (ARF1-BP).;Transcript_evidence=AK064925 (DDBJ%2C Best hit);ORF_evidence=Q0JCZ4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: response to hormone stimulus (GO:0009725),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Transcriptional factor B3 (IPR003340),Auxin response factor (IPR010525),Aux/IAA-ARF-dimerisation (IPR011525),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=J013000N16;Oryzabase=10008;Expression=AK064925;TENOR=Os04t0442000-01;KEGG=Os04t0442000-01
Chr04	irgsp1_rep	five_prime_UTR	22006405	22006795	.	+	.	Parent=Os04t0442000-01
Chr04	irgsp1_rep	CDS	22006796	22006838	.	+	0	Parent=Os04t0442000-01
Chr04	irgsp1_rep	CDS	22007525	22007640	.	+	2	Parent=Os04t0442000-01
Chr04	irgsp1_rep	CDS	22007768	22007863	.	+	0	Parent=Os04t0442000-01
Chr04	irgsp1_rep	CDS	22007984	22008040	.	+	0	Parent=Os04t0442000-01
Chr04	irgsp1_rep	CDS	22008223	22008375	.	+	0	Parent=Os04t0442000-01
Chr04	irgsp1_rep	CDS	22008509	22008593	.	+	0	Parent=Os04t0442000-01
Chr04	irgsp1_rep	CDS	22008852	22008942	.	+	2	Parent=Os04t0442000-01
Chr04	irgsp1_rep	CDS	22009079	22009243	.	+	1	Parent=Os04t0442000-01
Chr04	irgsp1_rep	CDS	22009568	22009687	.	+	1	Parent=Os04t0442000-01
Chr04	irgsp1_rep	CDS	22009775	22009859	.	+	1	Parent=Os04t0442000-01
Chr04	irgsp1_rep	CDS	22009989	22010157	.	+	0	Parent=Os04t0442000-01
Chr04	irgsp1_rep	CDS	22010456	22010928	.	+	2	Parent=Os04t0442000-01
Chr04	irgsp1_rep	CDS	22011005	22011195	.	+	0	Parent=Os04t0442000-01
Chr04	irgsp1_rep	CDS	22011285	22011462	.	+	1	Parent=Os04t0442000-01
Chr04	irgsp1_rep	three_prime_UTR	22011463	22012018	.	+	.	Parent=Os04t0442000-01
Chr04	irgsp1_rep	mRNA	22010567	22011386	.	-	.	ID=Os04t0442050-00;Name=Os04t0442050-00;Locus_id=Os04g0442050;Note=Hypothetical gene.;Transcript_evidence=BT017140 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0442050-00;KEGG=Os04t0442050-00
Chr04	irgsp1_rep	five_prime_UTR	22011385	22011386	.	-	.	Parent=Os04t0442050-00
Chr04	irgsp1_rep	CDS	22011283	22011384	.	-	0	Parent=Os04t0442050-00
Chr04	irgsp1_rep	CDS	22011053	22011193	.	-	0	Parent=Os04t0442050-00
Chr04	irgsp1_rep	three_prime_UTR	22010991	22011052	.	-	.	Parent=Os04t0442050-00
Chr04	irgsp1_rep	three_prime_UTR	22010567	22010918	.	-	.	Parent=Os04t0442050-00
Chr04	irgsp1_rep	mRNA	22014111	22017058	.	+	.	ID=Os04t0442100-01;Name=Os04t0442100-01;Locus_id=Os04g0442100;Note=Smr protein/MutS2 C-terminal domain containing protein.;Transcript_evidence=AK067142 (DDBJ%2C Best hit);ORF_evidence=B8AUB6 (UniProt);InterPro=Smr protein/MutS2 C-terminal (IPR002625),Domain of unknown function DUF1771 (IPR013899);NIAS_FLcDNA=J013095E05;Expression=AK067142;TENOR=Os04t0442100-01;KEGG=Os04t0442100-01
Chr04	irgsp1_rep	five_prime_UTR	22014111	22014413	.	+	.	Parent=Os04t0442100-01
Chr04	irgsp1_rep	five_prime_UTR	22014840	22014979	.	+	.	Parent=Os04t0442100-01
Chr04	irgsp1_rep	CDS	22014980	22015623	.	+	0	Parent=Os04t0442100-01
Chr04	irgsp1_rep	CDS	22016167	22016552	.	+	1	Parent=Os04t0442100-01
Chr04	irgsp1_rep	CDS	22016731	22016864	.	+	2	Parent=Os04t0442100-01
Chr04	irgsp1_rep	three_prime_UTR	22016865	22017058	.	+	.	Parent=Os04t0442100-01
Chr04	irgsp1_rep	mRNA	22017906	22024024	.	+	.	ID=Os04t0442200-01;Name=Os04t0442200-01;Locus_id=Os04g0442200;Note=Protein of unknown function DUF482 family protein.;Transcript_evidence=AK073492 (DDBJ%2C Best hit);ORF_evidence=B8AUB7 (UniProt);InterPro=Protein of unknown function DUF482 (IPR007434),Acyl-CoA N-acyltransferase (IPR016181);NIAS_FLcDNA=J033040F03;Expression=AK073492;TENOR=Os04t0442200-01;KEGG=Os04t0442200-01
Chr04	irgsp1_rep	five_prime_UTR	22017906	22018004	.	+	.	Parent=Os04t0442200-01
Chr04	irgsp1_rep	CDS	22018005	22018076	.	+	0	Parent=Os04t0442200-01
Chr04	irgsp1_rep	CDS	22018670	22018816	.	+	0	Parent=Os04t0442200-01
Chr04	irgsp1_rep	CDS	22018894	22019064	.	+	0	Parent=Os04t0442200-01
Chr04	irgsp1_rep	CDS	22019635	22019717	.	+	0	Parent=Os04t0442200-01
Chr04	irgsp1_rep	CDS	22019804	22020002	.	+	1	Parent=Os04t0442200-01
Chr04	irgsp1_rep	CDS	22020423	22020544	.	+	0	Parent=Os04t0442200-01
Chr04	irgsp1_rep	CDS	22021507	22021573	.	+	1	Parent=Os04t0442200-01
Chr04	irgsp1_rep	CDS	22021715	22021765	.	+	0	Parent=Os04t0442200-01
Chr04	irgsp1_rep	CDS	22021941	22021993	.	+	0	Parent=Os04t0442200-01
Chr04	irgsp1_rep	CDS	22022546	22022756	.	+	1	Parent=Os04t0442200-01
Chr04	irgsp1_rep	CDS	22023036	22023206	.	+	0	Parent=Os04t0442200-01
Chr04	irgsp1_rep	CDS	22023741	22023833	.	+	0	Parent=Os04t0442200-01
Chr04	irgsp1_rep	three_prime_UTR	22023834	22024024	.	+	.	Parent=Os04t0442200-01
Chr04	irgsp1_rep	mRNA	22023832	22027680	.	-	.	ID=Os04t0442300-01;Name=Os04t0442300-01;Locus_id=Os04g0442300;RAP-DB Gene Symbol Synonym(s)=RR1%2C rr1%2C OsRR1%2C Rra9%2C OsRRA9;RAP-DB Gene Name Synonym(s)=A-TYPE RESPONSE REGULATOR 1%2C A-TYPE response regulator 1%2C Type A response regulator 1%2C A-type RR 9;CGSNL Gene Symbol=RR1;CGSNL Gene Name=A-TYPE RESPONSE REGULATOR 1;Oryzabase Gene Symbol Synonym(s)=rr1%2C OsRR1%2C Rra9%2C OsRRA9;Oryzabase Gene Name Synonym(s)=A-TYPE response regulator 1%2C Type A response regulator 1%2C A-type RR 9;Note=A-type response regulator%2C Cytokinin signaling;Transcript_evidence=AK072736 (Genbank),AB249661 (Genbank),BR000311 (Genbank);ORF_evidence=Q2HWG4 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: two-component response regulator activity (GO:0000156);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),CheY-like superfamily (IPR011006);NIAS_FLcDNA=J023139D11;Manual Curation=April 6%2C 2010;Literature_PMID=16919402,16472405,17293362;Oryzabase=8154;TENOR=Os04t0442300-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22027317	22027680	.	-	.	Parent=Os04t0442300-01
Chr04	irgsp1_rep	CDS	22027205	22027316	.	-	0	Parent=Os04t0442300-01
Chr04	irgsp1_rep	CDS	22026649	22026710	.	-	2	Parent=Os04t0442300-01
Chr04	irgsp1_rep	CDS	22026031	22026108	.	-	0	Parent=Os04t0442300-01
Chr04	irgsp1_rep	CDS	22025805	22025875	.	-	0	Parent=Os04t0442300-01
Chr04	irgsp1_rep	CDS	22024856	22025085	.	-	1	Parent=Os04t0442300-01
Chr04	irgsp1_rep	CDS	22024580	22024722	.	-	2	Parent=Os04t0442300-01
Chr04	irgsp1_rep	three_prime_UTR	22023832	22024579	.	-	.	Parent=Os04t0442300-01
Chr04	irgsp1_rep	mRNA	22024130	22027482	.	-	.	ID=Os04t0442300-02;Name=Os04t0442300-02;Locus_id=Os04g0442300;RAP-DB Gene Symbol Synonym(s)=OSRR1%2C OsRR1%2C rr1;RAP-DB Gene Name Synonym(s)=A-TYPE RESPONSE REGULATOR 1%2C A-type response regulator 1%2C A-TYPE response regulator 1%2C Type A response regulator 1;CGSNL Gene Symbol=RR1;CGSNL Gene Name=A-TYPE RESPONSE REGULATOR 1;Oryzabase Gene Symbol Synonym(s)=rr1%2C OsRR1%2C Rra9%2C OsRRA9;Oryzabase Gene Name Synonym(s)=A-TYPE response regulator 1%2C Type A response regulator 1%2C A-type RR 9;Note=A-type response regulator%2C Cytokinin signaling;Transcript_evidence=AK105815 (Genbank),AB249661 (Genbank),BR000311 (Genbank);ORF_evidence=Q2HWG4 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: two-component response regulator activity (GO:0000156);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),CheY-like superfamily (IPR011006);NIAS_FLcDNA=001-203-C10;Manual Curation=April 6%2C 2010;Literature_PMID=16919402,16472405,17293362;Oryzabase=8154;TENOR=Os04t0442300-02;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22027317	22027482	.	-	.	Parent=Os04t0442300-02
Chr04	irgsp1_rep	CDS	22027205	22027316	.	-	0	Parent=Os04t0442300-02
Chr04	irgsp1_rep	CDS	22026649	22026710	.	-	2	Parent=Os04t0442300-02
Chr04	irgsp1_rep	CDS	22026031	22026108	.	-	0	Parent=Os04t0442300-02
Chr04	irgsp1_rep	CDS	22025805	22025875	.	-	0	Parent=Os04t0442300-02
Chr04	irgsp1_rep	CDS	22024856	22025085	.	-	1	Parent=Os04t0442300-02
Chr04	irgsp1_rep	CDS	22024580	22024722	.	-	2	Parent=Os04t0442300-02
Chr04	irgsp1_rep	three_prime_UTR	22024130	22024579	.	-	.	Parent=Os04t0442300-02
Chr04	irgsp1_rep	mRNA	22048088	22048832	.	-	.	ID=Os04t0442700-01;Name=Os04t0442700-01;Locus_id=Os04g0442700;Note=Hypothetical gene.;Transcript_evidence=AK119975 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-184-E12;TENOR=Os04t0442700-01
Chr04	irgsp1_rep	five_prime_UTR	22048320	22048832	.	-	.	Parent=Os04t0442700-01
Chr04	irgsp1_rep	CDS	22048088	22048319	.	-	0	Parent=Os04t0442700-01
Chr04	irgsp1_rep	mRNA	22059917	22062075	.	+	.	ID=Os04t0442800-01;Name=Os04t0442800-01;Locus_id=Os04g0442800;Note=Similar to Phragmoplast-associated kinesin-related protein 1 (Fragment).;Transcript_evidence=AK121065 (DDBJ%2C Best hit);ORF_evidence=NP_001030750.1 (RefSeq);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752);NIAS_FLcDNA=J023059L16;Expression=AK121065;TENOR=Os04t0442800-01;KEGG=Os04t0442800-01
Chr04	irgsp1_rep	five_prime_UTR	22059917	22060610	.	+	.	Parent=Os04t0442800-01
Chr04	irgsp1_rep	CDS	22060611	22060769	.	+	0	Parent=Os04t0442800-01
Chr04	irgsp1_rep	CDS	22060935	22061030	.	+	0	Parent=Os04t0442800-01
Chr04	irgsp1_rep	CDS	22061482	22061649	.	+	0	Parent=Os04t0442800-01
Chr04	irgsp1_rep	three_prime_UTR	22061650	22062075	.	+	.	Parent=Os04t0442800-01
Chr04	irgsp1_rep	mRNA	22075030	22077786	.	+	.	ID=Os04t0443000-01;Name=Os04t0443000-01;Locus_id=Os04g0443000;Note=FAR1 domain containing protein.;Transcript_evidence=AK100533 (DDBJ%2C Best hit);ORF_evidence=Q1SKU8 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=FAR1 DNA binding domain (IPR004330),Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);NIAS_FLcDNA=J023101L24;Expression=AK100533;TENOR=Os04t0443000-01;KEGG=Os04t0443000-01
Chr04	irgsp1_rep	five_prime_UTR	22075030	22075221	.	+	.	Parent=Os04t0443000-01
Chr04	irgsp1_rep	CDS	22075222	22076229	.	+	0	Parent=Os04t0443000-01
Chr04	irgsp1_rep	CDS	22076346	22076792	.	+	0	Parent=Os04t0443000-01
Chr04	irgsp1_rep	CDS	22077009	22077629	.	+	0	Parent=Os04t0443000-01
Chr04	irgsp1_rep	three_prime_UTR	22077630	22077786	.	+	.	Parent=Os04t0443000-01
Chr04	irgsp1_rep	mRNA	22078839	22079508	.	-	.	ID=Os04t0443200-01;Name=Os04t0443200-01;Locus_id=Os04g0443200;Note=Protein of unknown function DUF538 family protein.;Transcript_evidence=AK107991 (DDBJ%2C Best hit);ORF_evidence=Q7XTH5 (UniProt);InterPro=Protein of unknown function DUF538 (IPR007493);NIAS_FLcDNA=002-135-F08;Expression=AK107991;TENOR=Os04t0443200-01;KEGG=Os04t0443200-01
Chr04	irgsp1_rep	five_prime_UTR	22079470	22079508	.	-	.	Parent=Os04t0443200-01
Chr04	irgsp1_rep	CDS	22078972	22079469	.	-	0	Parent=Os04t0443200-01
Chr04	irgsp1_rep	three_prime_UTR	22078839	22078971	.	-	.	Parent=Os04t0443200-01
Chr04	irgsp1_rep	mRNA	22081905	22084258	.	-	.	ID=Os04t0443300-00;Name=Os04t0443300-00;Locus_id=Os04g0443300;CGSNL Gene Symbol=GH9B4;CGSNL Gene Name=GLYCOSIDE HYDROLASE 9B4;Oryzabase Gene Symbol Synonym(s)=OsGH9B4;Oryzabase Gene Name Synonym(s)=glycoside hydrolase OsGH9B4%2C glycoside hydrolase 9B4;Note=Endoglucanase 11.;Transcript_evidence=Q7XTH4 (UniProt);ORF_evidence=Q7XTH4 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 9 (IPR001701),Six-hairpin glycosidase-like (IPR008928),Six-hairpin glycosidase (IPR012341),Glycoside hydrolase%2C family 9%2C active site (IPR018221);Oryzabase=11704;TENOR=Os04t0443300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	22084022	22084258	.	-	0	Parent=Os04t0443300-00
Chr04	irgsp1_rep	CDS	22083281	22083937	.	-	0	Parent=Os04t0443300-00
Chr04	irgsp1_rep	CDS	22082705	22082980	.	-	0	Parent=Os04t0443300-00
Chr04	irgsp1_rep	CDS	22081905	22082237	.	-	0	Parent=Os04t0443300-00
Chr04	irgsp1_rep	mRNA	22081921	22084216	.	+	.	ID=Os04t0443400-00;Name=Os04t0443400-00;Locus_id=Os04g0443400;Note=Hypothetical protein.;Transcript_evidence=tplb0042g22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0443400-00
Chr04	irgsp1_rep	five_prime_UTR	22081921	22081922	.	+	.	Parent=Os04t0443400-00
Chr04	irgsp1_rep	CDS	22081923	22082252	.	+	0	Parent=Os04t0443400-00
Chr04	irgsp1_rep	three_prime_UTR	22082253	22082284	.	+	.	Parent=Os04t0443400-00
Chr04	irgsp1_rep	three_prime_UTR	22082729	22082947	.	+	.	Parent=Os04t0443400-00
Chr04	irgsp1_rep	three_prime_UTR	22083236	22083926	.	+	.	Parent=Os04t0443400-00
Chr04	irgsp1_rep	three_prime_UTR	22084014	22084216	.	+	.	Parent=Os04t0443400-00
Chr04	irgsp1_rep	mRNA	22087681	22093176	.	+	.	ID=Os04t0443500-01;Name=Os04t0443500-01;Locus_id=Os04g0443500;Note=Similar to Protein phosphatase methylesterase 1 (EC 3.1.1.-) (PME-1). Splice isoform 3.;Transcript_evidence=AK105357 (DDBJ%2C Best hit);ORF_evidence=B8AUB9 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: carboxylesterase activity (GO:0004091);InterPro=Alpha/beta hydrolase fold-1 (IPR000073),Epoxide hydrolase-like (IPR000639),Protein phosphatase methylesterase%2C eukaryotic (IPR016812);NIAS_FLcDNA=001-119-C06;Expression=AK105357;TENOR=Os04t0443500-01;KEGG=Os04t0443500-01 (EC:3.1.1.-);B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22087681	22087761	.	+	.	Parent=Os04t0443500-01
Chr04	irgsp1_rep	CDS	22087762	22087865	.	+	0	Parent=Os04t0443500-01
Chr04	irgsp1_rep	CDS	22088003	22088087	.	+	1	Parent=Os04t0443500-01
Chr04	irgsp1_rep	CDS	22088209	22088279	.	+	0	Parent=Os04t0443500-01
Chr04	irgsp1_rep	CDS	22089269	22089383	.	+	1	Parent=Os04t0443500-01
Chr04	irgsp1_rep	CDS	22089540	22089619	.	+	0	Parent=Os04t0443500-01
Chr04	irgsp1_rep	CDS	22089958	22090042	.	+	1	Parent=Os04t0443500-01
Chr04	irgsp1_rep	CDS	22090125	22090205	.	+	0	Parent=Os04t0443500-01
Chr04	irgsp1_rep	CDS	22090737	22090831	.	+	0	Parent=Os04t0443500-01
Chr04	irgsp1_rep	CDS	22090954	22091004	.	+	1	Parent=Os04t0443500-01
Chr04	irgsp1_rep	CDS	22091522	22091602	.	+	1	Parent=Os04t0443500-01
Chr04	irgsp1_rep	CDS	22092315	22092387	.	+	1	Parent=Os04t0443500-01
Chr04	irgsp1_rep	CDS	22092713	22092790	.	+	0	Parent=Os04t0443500-01
Chr04	irgsp1_rep	CDS	22092880	22092912	.	+	0	Parent=Os04t0443500-01
Chr04	irgsp1_rep	three_prime_UTR	22092913	22093176	.	+	.	Parent=Os04t0443500-01
Chr04	irgsp1_rep	mRNA	22095067	22097462	.	-	.	ID=Os04t0443700-01;Name=Os04t0443700-01;Locus_id=Os04g0443700;Note=Conserved hypothetical protein.;Transcript_evidence=AK073841 (DDBJ%2C Best hit);ORF_evidence=Q7X8Q0 (UniProt);NIAS_FLcDNA=J033070F18;TENOR=Os04t0443700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22097462	22097462	.	-	.	Parent=Os04t0443700-01
Chr04	irgsp1_rep	CDS	22097227	22097461	.	-	0	Parent=Os04t0443700-01
Chr04	irgsp1_rep	CDS	22095319	22096349	.	-	2	Parent=Os04t0443700-01
Chr04	irgsp1_rep	three_prime_UTR	22095067	22095318	.	-	.	Parent=Os04t0443700-01
Chr04	irgsp1_rep	mRNA	22100238	22101910	.	-	.	ID=Os04t0443750-00;Name=Os04t0443750-00;Locus_id=Os04g0443750;Note=Similar to CPRD8 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=P93699 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=NADH:flavin oxidoreductase/NADH oxidase%2C N-terminal (IPR001155),Aldolase-type TIM barrel (IPR013785);TENOR=Os04t0443750-00
Chr04	irgsp1_rep	CDS	22101804	22101910	.	-	0	Parent=Os04t0443750-00
Chr04	irgsp1_rep	CDS	22101390	22101670	.	-	1	Parent=Os04t0443750-00
Chr04	irgsp1_rep	CDS	22100238	22100419	.	-	2	Parent=Os04t0443750-00
Chr04	irgsp1_rep	mRNA	22107302	22108833	.	-	.	ID=Os04t0443801-01;Name=Os04t0443801-01;Locus_id=Os04g0443801;Note=CytoChrome c oxidase biogenesis protein Cmc1-like domain containing protein.;Transcript_evidence=AK104938 (DDBJ%2C Best hit);ORF_evidence=B8BJN1 (UniProt);InterPro=CytoChrome c oxidase biogenesis protein Cmc1-like (IPR013892);NIAS_FLcDNA=001-106-C05;TENOR=Os04t0443801-01
Chr04	irgsp1_rep	CDS	22108704	22108833	.	-	0	Parent=Os04t0443801-01
Chr04	irgsp1_rep	CDS	22107890	22107957	.	-	2	Parent=Os04t0443801-01
Chr04	irgsp1_rep	CDS	22107703	22107807	.	-	0	Parent=Os04t0443801-01
Chr04	irgsp1_rep	CDS	22107472	22107573	.	-	0	Parent=Os04t0443801-01
Chr04	irgsp1_rep	three_prime_UTR	22107302	22107471	.	-	.	Parent=Os04t0443801-01
Chr04	irgsp1_rep	mRNA	22103142	22108809	.	-	.	ID=Os04t0443801-02;Name=Os04t0443801-02;Locus_id=Os04g0443801;Note=Similar to 12-oxo-phytodienoic acid reductase5.;Transcript_evidence=AK067218 (DDBJ%2C Best hit);ORF_evidence=NP_001105909.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=NADH:flavin oxidoreductase/NADH oxidase%2C N-terminal (IPR001155),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J013098J23;TENOR=Os04t0443801-02
Chr04	irgsp1_rep	five_prime_UTR	22108704	22108809	.	-	.	Parent=Os04t0443801-02
Chr04	irgsp1_rep	five_prime_UTR	22107890	22107957	.	-	.	Parent=Os04t0443801-02
Chr04	irgsp1_rep	five_prime_UTR	22107703	22107807	.	-	.	Parent=Os04t0443801-02
Chr04	irgsp1_rep	five_prime_UTR	22106799	22107573	.	-	.	Parent=Os04t0443801-02
Chr04	irgsp1_rep	five_prime_UTR	22105863	22105892	.	-	.	Parent=Os04t0443801-02
Chr04	irgsp1_rep	CDS	22105804	22105862	.	-	0	Parent=Os04t0443801-02
Chr04	irgsp1_rep	CDS	22104797	22105065	.	-	1	Parent=Os04t0443801-02
Chr04	irgsp1_rep	CDS	22104240	22104383	.	-	2	Parent=Os04t0443801-02
Chr04	irgsp1_rep	CDS	22103346	22104004	.	-	2	Parent=Os04t0443801-02
Chr04	irgsp1_rep	three_prime_UTR	22103142	22103345	.	-	.	Parent=Os04t0443801-02
Chr04	irgsp1_rep	mRNA	22103142	22106908	.	-	.	ID=Os04t0443801-03;Name=Os04t0443801-03;Locus_id=Os04g0443801;Note=Similar to 12-oxo-phytodienoic acid reductase5.;Transcript_evidence=AK073836 (DDBJ%2C Best hit);ORF_evidence=NP_001105909.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=NADH:flavin oxidoreductase/NADH oxidase%2C N-terminal (IPR001155),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J033069H04;TENOR=Os04t0443801-03
Chr04	irgsp1_rep	five_prime_UTR	22106266	22106908	.	-	.	Parent=Os04t0443801-03
Chr04	irgsp1_rep	five_prime_UTR	22105863	22106197	.	-	.	Parent=Os04t0443801-03
Chr04	irgsp1_rep	CDS	22105804	22105862	.	-	0	Parent=Os04t0443801-03
Chr04	irgsp1_rep	CDS	22104797	22105065	.	-	1	Parent=Os04t0443801-03
Chr04	irgsp1_rep	CDS	22104240	22104383	.	-	2	Parent=Os04t0443801-03
Chr04	irgsp1_rep	CDS	22103346	22104004	.	-	2	Parent=Os04t0443801-03
Chr04	irgsp1_rep	three_prime_UTR	22103142	22103345	.	-	.	Parent=Os04t0443801-03
Chr04	irgsp1_rep	mRNA	22103484	22105071	.	+	.	ID=Os04t0443850-00;Name=Os04t0443850-00;Locus_id=Os04g0443850;Note=Hypothetical protein.;Transcript_evidence=CT831918 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os04t0443850-00
Chr04	irgsp1_rep	five_prime_UTR	22103484	22103630	.	+	.	Parent=Os04t0443850-00
Chr04	irgsp1_rep	CDS	22103631	22104014	.	+	0	Parent=Os04t0443850-00
Chr04	irgsp1_rep	three_prime_UTR	22104015	22104024	.	+	.	Parent=Os04t0443850-00
Chr04	irgsp1_rep	three_prime_UTR	22104306	22104443	.	+	.	Parent=Os04t0443850-00
Chr04	irgsp1_rep	three_prime_UTR	22104685	22105071	.	+	.	Parent=Os04t0443850-00
Chr04	irgsp1_rep	mRNA	22118247	22122536	.	-	.	ID=Os04t0443900-01;Name=Os04t0443900-01;Locus_id=Os04g0443900;Note=Similar to RuBisCO large subunit-binding protein subunit beta%2C chloroplastic.;Transcript_evidence=AK068562 (DDBJ%2C Best hit);ORF_evidence=P08927 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: protein refolding (GO:0042026),Biological Process: cellular protein metabolic process (GO:0044267),Cellular Component: cytoplasm (GO:0005737),Molecular Function: ATP binding (GO:0005524);InterPro=Chaperonin Cpn60 (IPR001844),Chaperonin Cpn60/TCP-1 (IPR002423),Chaperonin Cpn60%2C conserved site (IPR018370);NIAS_FLcDNA=J013152E19;TENOR=Os04t0443900-01
Chr04	irgsp1_rep	five_prime_UTR	22122455	22122536	.	-	.	Parent=Os04t0443900-01
Chr04	irgsp1_rep	CDS	22122308	22122454	.	-	0	Parent=Os04t0443900-01
Chr04	irgsp1_rep	CDS	22122078	22122203	.	-	0	Parent=Os04t0443900-01
Chr04	irgsp1_rep	CDS	22121575	22121712	.	-	0	Parent=Os04t0443900-01
Chr04	irgsp1_rep	CDS	22121344	22121439	.	-	0	Parent=Os04t0443900-01
Chr04	irgsp1_rep	CDS	22120997	22121239	.	-	0	Parent=Os04t0443900-01
Chr04	irgsp1_rep	CDS	22120686	22120920	.	-	0	Parent=Os04t0443900-01
Chr04	irgsp1_rep	CDS	22120431	22120600	.	-	2	Parent=Os04t0443900-01
Chr04	irgsp1_rep	CDS	22120028	22120105	.	-	0	Parent=Os04t0443900-01
Chr04	irgsp1_rep	CDS	22119850	22119921	.	-	0	Parent=Os04t0443900-01
Chr04	irgsp1_rep	CDS	22119659	22119763	.	-	0	Parent=Os04t0443900-01
Chr04	irgsp1_rep	CDS	22119325	22119417	.	-	0	Parent=Os04t0443900-01
Chr04	irgsp1_rep	CDS	22119105	22119197	.	-	0	Parent=Os04t0443900-01
Chr04	irgsp1_rep	CDS	22118837	22118987	.	-	0	Parent=Os04t0443900-01
Chr04	irgsp1_rep	CDS	22118736	22118755	.	-	2	Parent=Os04t0443900-01
Chr04	irgsp1_rep	three_prime_UTR	22118247	22118735	.	-	.	Parent=Os04t0443900-01
Chr04	irgsp1_rep	mRNA	22123587	22124357	.	-	.	ID=Os04t0443951-00;Name=Os04t0443951-00;Locus_id=Os04g0443951;Note=Hypothetical protein.;Transcript_evidence=EU948347 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0443951-00
Chr04	irgsp1_rep	five_prime_UTR	22124356	22124357	.	-	.	Parent=Os04t0443951-00
Chr04	irgsp1_rep	CDS	22123630	22124355	.	-	0	Parent=Os04t0443951-00
Chr04	irgsp1_rep	three_prime_UTR	22123587	22123629	.	-	.	Parent=Os04t0443951-00
Chr04	irgsp1_rep	mRNA	22143874	22144354	.	-	.	ID=Os04t0444050-00;Name=Os04t0444050-00;Locus_id=Os04g0444050;Note=Hypothetical protein.;Transcript_evidence=EU948609 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0444050-00
Chr04	irgsp1_rep	five_prime_UTR	22144354	22144354	.	-	.	Parent=Os04t0444050-00
Chr04	irgsp1_rep	CDS	22143874	22144353	.	-	0	Parent=Os04t0444050-00
Chr04	irgsp1_rep	mRNA	22143825	22144352	.	+	.	ID=Os04t0444100-01;Name=Os04t0444100-01;Locus_id=Os04g0444100;RAP-DB Gene Symbol Synonym(s)=NSG1;RAP-DB Gene Name Synonym(s)=NONSTOP GLUMES 1;CGSNL Gene Symbol=NSG1;CGSNL Gene Name=NONSTOP GLUMES1;Oryzabase Gene Symbol Synonym(s)=OsNSG1;Oryzabase Gene Name Synonym(s)=nonstop glumes 1;Note=C2H2 zinc finger protein%2C Regulation of spikelet development;Transcript_evidence=GQ999998 (Shiokari);ORF_evidence=Q7XRM1;GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Zinc finger C2H2-type (IPR013087);Manual Curation=December 9%2C 2019;Literature_PMID=31806675;Oryzabase=23439;TENOR=Os04t0444100-00;Subcellular location=nucleus (GO:0005634)
Chr04	irgsp1_rep	CDS	22143825	22144352	.	+	0	Parent=Os04t0444100-01
Chr04	irgsp1_rep	mRNA	22149778	22155328	.	+	.	ID=Os04t0444200-01;Name=Os04t0444200-01;Locus_id=Os04g0444200;CGSNL Gene Symbol=CAM;CGSNL Gene Name=CALMODULIN;Oryzabase Gene Symbol Synonym(s)=OsCaM;Oryzabase Gene Name Synonym(s)=calmodulin;Note=Similar to Calmodulin-binding protein 60-B (Fragment).;Transcript_evidence=AK072545 (DDBJ%2C Best hit);ORF_evidence=NP_001150045.1 (RefSeq);InterPro=Calmodulin binding protein-like (IPR012416);NIAS_FLcDNA=J023131N23;Oryzabase=10235;Expression=AK072545;TENOR=Os04t0444200-01;KEGG=Os04t0444200-01
Chr04	irgsp1_rep	five_prime_UTR	22149778	22149923	.	+	.	Parent=Os04t0444200-01
Chr04	irgsp1_rep	five_prime_UTR	22150015	22150055	.	+	.	Parent=Os04t0444200-01
Chr04	irgsp1_rep	CDS	22150056	22150177	.	+	0	Parent=Os04t0444200-01
Chr04	irgsp1_rep	CDS	22151471	22151546	.	+	1	Parent=Os04t0444200-01
Chr04	irgsp1_rep	CDS	22151646	22151716	.	+	0	Parent=Os04t0444200-01
Chr04	irgsp1_rep	CDS	22151851	22152344	.	+	1	Parent=Os04t0444200-01
Chr04	irgsp1_rep	CDS	22152428	22152588	.	+	2	Parent=Os04t0444200-01
Chr04	irgsp1_rep	CDS	22152678	22152881	.	+	0	Parent=Os04t0444200-01
Chr04	irgsp1_rep	CDS	22153641	22153875	.	+	0	Parent=Os04t0444200-01
Chr04	irgsp1_rep	CDS	22154345	22154940	.	+	2	Parent=Os04t0444200-01
Chr04	irgsp1_rep	three_prime_UTR	22154941	22155328	.	+	.	Parent=Os04t0444200-01
Chr04	irgsp1_rep	mRNA	22154341	22154867	.	-	.	ID=Os04t0444250-00;Name=Os04t0444250-00;Locus_id=Os04g0444250;Note=Non-protein coding transcript.;Transcript_evidence=EU949450 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0444250-00
Chr04	irgsp1_rep	exon	22154341	22154867	.	-	.	Parent=Os04t0444250-00
Chr04	irgsp1_rep	mRNA	22157298	22159233	.	+	.	ID=Os04t0444300-01;Name=Os04t0444300-01;Locus_id=Os04g0444300;RAP-DB Gene Symbol Synonym(s)=OsARGOS;Oryzabase Gene Symbol Synonym(s)=OsARGOS;Note=Rice ortholog of ARGOS%2C Organ size control;Transcript_evidence=AK102641;ORF_evidence=Q7X6L2;NIAS_FLcDNA=J033100F02;Manual Curation=October 16%2C 2020;Literature_PMID=19161943;Oryzabase=16710;Expression=AK102641;TENOR=Os04t0444300-01;KEGG=Os04t0444300-01;Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737), cell membrane (GO:0005886)
Chr04	irgsp1_rep	five_prime_UTR	22157298	22157647	.	+	.	Parent=Os04t0444300-01
Chr04	irgsp1_rep	five_prime_UTR	22158283	22158508	.	+	.	Parent=Os04t0444300-01
Chr04	irgsp1_rep	CDS	22158509	22159045	.	+	0	Parent=Os04t0444300-01
Chr04	irgsp1_rep	three_prime_UTR	22159046	22159233	.	+	.	Parent=Os04t0444300-01
Chr04	irgsp1_rep	mRNA	22161607	22166296	.	-	.	ID=Os04t0444400-00;Name=Os04t0444400-00;Locus_id=Os04g0444400;CGSNL Gene Symbol=MLO_;CGSNL Gene Name=POWDERY-MILDEW-RESISTANCE GENE O_;Oryzabase Gene Symbol Synonym(s)=OsMLO5%2C MLO5;Oryzabase Gene Name Synonym(s)=powdery-MiLdew-resistance gene O5%2C Mildew resistance Locus O-5;Note=Similar to barley mlo defense gene homolog3.;Transcript_evidence=AY029314 (DDBJ);ORF_evidence=NP_001105527.1 (RefSeq);GO=Biological Process: cell death (GO:0008219),Cellular Component: integral to membrane (GO:0016021);InterPro=Mlo-related protein (IPR004326);Oryzabase=9188;TENOR=Os04t0444400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22166250	22166296	.	-	.	Parent=Os04t0444400-00
Chr04	irgsp1_rep	CDS	22166130	22166249	.	-	0	Parent=Os04t0444400-00
Chr04	irgsp1_rep	CDS	22165967	22166021	.	-	0	Parent=Os04t0444400-00
Chr04	irgsp1_rep	CDS	22165616	22165845	.	-	2	Parent=Os04t0444400-00
Chr04	irgsp1_rep	CDS	22164864	22164980	.	-	0	Parent=Os04t0444400-00
Chr04	irgsp1_rep	CDS	22164480	22164531	.	-	0	Parent=Os04t0444400-00
Chr04	irgsp1_rep	CDS	22164140	22164237	.	-	2	Parent=Os04t0444400-00
Chr04	irgsp1_rep	CDS	22163817	22163891	.	-	0	Parent=Os04t0444400-00
Chr04	irgsp1_rep	CDS	22163609	22163697	.	-	0	Parent=Os04t0444400-00
Chr04	irgsp1_rep	CDS	22163360	22163409	.	-	1	Parent=Os04t0444400-00
Chr04	irgsp1_rep	CDS	22163216	22163256	.	-	2	Parent=Os04t0444400-00
Chr04	irgsp1_rep	CDS	22162873	22163082	.	-	0	Parent=Os04t0444400-00
Chr04	irgsp1_rep	CDS	22162266	22162333	.	-	0	Parent=Os04t0444400-00
Chr04	irgsp1_rep	CDS	22162083	22162143	.	-	1	Parent=Os04t0444400-00
Chr04	irgsp1_rep	CDS	22161607	22161777	.	-	0	Parent=Os04t0444400-00
Chr04	irgsp1_rep	mRNA	22168354	22170852	.	+	.	ID=Os04t0444600-01;Name=Os04t0444600-01;Locus_id=Os04g0444600;CGSNL Gene Symbol=RPN6;CGSNL Gene Name=19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 6;Oryzabase Gene Symbol Synonym(s)=OsRpn6%2C Rpn6;Oryzabase Gene Name Synonym(s)=19S regulatory particle non-ATPase subunit 6%2C RP non-ATPase 6;Note=Similar to 26S proteasome subunit RPN6a (Fragment).;Transcript_evidence=AK064788 (DDBJ%2C Best hit);ORF_evidence=B6TWL4 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Proteasome component (PCI) domain (IPR000717),Tetratricopeptide-like helical (IPR011990),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),PCI/PINT associated module (IPR013143);NIAS_FLcDNA=J013000B21;Oryzabase=20566;Expression=AK064788;TENOR=Os04t0444600-01;KEGG=Os04t0444600-01
Chr04	irgsp1_rep	five_prime_UTR	22168354	22168476	.	+	.	Parent=Os04t0444600-01
Chr04	irgsp1_rep	five_prime_UTR	22169453	22169459	.	+	.	Parent=Os04t0444600-01
Chr04	irgsp1_rep	CDS	22169460	22170737	.	+	0	Parent=Os04t0444600-01
Chr04	irgsp1_rep	three_prime_UTR	22170738	22170852	.	+	.	Parent=Os04t0444600-01
Chr04	irgsp1_rep	mRNA	22170313	22170852	.	+	.	ID=Os04t0444600-02;Name=Os04t0444600-02;Locus_id=Os04g0444600;CGSNL Gene Symbol=RPN6;CGSNL Gene Name=19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 6;Oryzabase Gene Symbol Synonym(s)=OsRpn6%2C Rpn6;Oryzabase Gene Name Synonym(s)=19S regulatory particle non-ATPase subunit 6%2C RP non-ATPase 6;Note=Similar to 26S proteasome non-ATPase regulatory subunit 11.;Transcript_evidence=AK061617 (DDBJ%2C Best hit);ORF_evidence=B6TWL4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Proteasome component (PCI) domain (IPR000717),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=001-033-C10;Oryzabase=20566;Expression=AK061617;TENOR=Os04t0444600-02;KEGG=Os04t0444600-02
Chr04	irgsp1_rep	five_prime_UTR	22170313	22170314	.	+	.	Parent=Os04t0444600-02
Chr04	irgsp1_rep	CDS	22170315	22170737	.	+	0	Parent=Os04t0444600-02
Chr04	irgsp1_rep	three_prime_UTR	22170738	22170852	.	+	.	Parent=Os04t0444600-02
Chr04	irgsp1_rep	mRNA	22182599	22186763	.	+	.	ID=Os04t0444800-01;Name=Os04t0444800-01;Locus_id=Os04g0444800;RAP-DB Gene Symbol Synonym(s)=OsFRO1%2C OsFRO7;RAP-DB Gene Name Synonym(s)=Ferric reductase oxidase 1%2C ferric reductase oxidase 7;Oryzabase Gene Symbol Synonym(s)=OsFRO7%2C FRO7%2C OsFRO1%2C FRO1;Oryzabase Gene Name Synonym(s)=ferric reductase oxidase 7;Note=Ferric reductase oxidase%2C Fe homeostasis%2C Salt stress response;Transcript_evidence=AK070312;ORF_evidence=Q0JCX7;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Riboflavin synthase-like beta-barrel (IPR017938),Ferredoxin-NADP reductase (FNR)%2C nucleotide-binding domain (IPR039261),Ferric reductase transmembrane component-like domain (IPR013130),FAD-binding domain%2C ferredoxin reductase-type (IPR017927),FAD-binding 8 (IPR013112),Ferric reductase%2C NAD binding domain (IPR013121);NIAS_FLcDNA=J023047G23;Manual Curation=June 21%2C 2019;Literature_PMID=31214220,23629674;Oryzabase=11859;Expression=AK070312;TENOR=Os04t0444800-01;KEGG=Os04t0444800-01 (EC:1.16.1.7);Subcellular location=tonoplast (GO:0009705)
Chr04	irgsp1_rep	five_prime_UTR	22182599	22182774	.	+	.	Parent=Os04t0444800-01
Chr04	irgsp1_rep	CDS	22182775	22183018	.	+	0	Parent=Os04t0444800-01
Chr04	irgsp1_rep	CDS	22183131	22183227	.	+	2	Parent=Os04t0444800-01
Chr04	irgsp1_rep	CDS	22183613	22183810	.	+	1	Parent=Os04t0444800-01
Chr04	irgsp1_rep	CDS	22184256	22184490	.	+	1	Parent=Os04t0444800-01
Chr04	irgsp1_rep	CDS	22184732	22185059	.	+	0	Parent=Os04t0444800-01
Chr04	irgsp1_rep	CDS	22185147	22185417	.	+	2	Parent=Os04t0444800-01
Chr04	irgsp1_rep	CDS	22185518	22185773	.	+	1	Parent=Os04t0444800-01
Chr04	irgsp1_rep	CDS	22185857	22186313	.	+	0	Parent=Os04t0444800-01
Chr04	irgsp1_rep	CDS	22186445	22186635	.	+	2	Parent=Os04t0444800-01
Chr04	irgsp1_rep	three_prime_UTR	22186636	22186763	.	+	.	Parent=Os04t0444800-01
Chr04	irgsp1_rep	mRNA	22182709	22186919	.	+	.	ID=Os04t0444800-02;Name=Os04t0444800-02;Locus_id=Os04g0444800;Oryzabase Gene Symbol Synonym(s)=OsFRO7%2C FRO7%2C OsFRO1%2C FRO1;Oryzabase Gene Name Synonym(s)=ferric reductase oxidase 7;Note=Ferric reductase-like transmembrane component family protein.;Transcript_evidence=AK067009 (DDBJ%2C Best hit);ORF_evidence=Q6L8G3 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: integral to membrane (GO:0016021),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=FAD-binding 8 (IPR013112),Ferric reductase%2C NAD binding (IPR013121),Flavoprotein transmembrane component (IPR013130),Ferredoxin reductase-type FAD-binding domain (IPR017927),Riboflavin synthase-like beta-barrel (IPR017938);NIAS_FLcDNA=J013093I17;Oryzabase=11859;Expression=AK067009;TENOR=Os04t0444800-02;KEGG=Os04t0444800-02
Chr04	irgsp1_rep	five_prime_UTR	22182709	22182774	.	+	.	Parent=Os04t0444800-02
Chr04	irgsp1_rep	CDS	22182775	22183018	.	+	0	Parent=Os04t0444800-02
Chr04	irgsp1_rep	CDS	22183131	22183227	.	+	2	Parent=Os04t0444800-02
Chr04	irgsp1_rep	CDS	22183613	22183810	.	+	1	Parent=Os04t0444800-02
Chr04	irgsp1_rep	CDS	22184256	22184490	.	+	1	Parent=Os04t0444800-02
Chr04	irgsp1_rep	CDS	22184732	22185059	.	+	0	Parent=Os04t0444800-02
Chr04	irgsp1_rep	CDS	22185147	22185417	.	+	2	Parent=Os04t0444800-02
Chr04	irgsp1_rep	CDS	22185518	22185773	.	+	1	Parent=Os04t0444800-02
Chr04	irgsp1_rep	CDS	22185857	22186313	.	+	0	Parent=Os04t0444800-02
Chr04	irgsp1_rep	CDS	22186445	22186635	.	+	2	Parent=Os04t0444800-02
Chr04	irgsp1_rep	three_prime_UTR	22186636	22186919	.	+	.	Parent=Os04t0444800-02
Chr04	irgsp1_rep	mRNA	22189044	22191821	.	+	.	ID=Os04t0444900-01;Name=Os04t0444900-01;Locus_id=Os04g0444900;Note=Similar to Alfin-1.;Transcript_evidence=AK063657 (DDBJ%2C Best hit),AK098960 (DDBJ%2C Best hit);ORF_evidence=Q01J42 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-type%2C conserved site (IPR019786),Zinc finger%2C PHD-finger (IPR019787),Protein of unknown function DUF3594 (IPR021998);NIAS_FLcDNA=001-119-B10,J013072K02;Expression=AK063657;TENOR=Os04t0444900-01;KEGG=Os04t0444900-01
Chr04	irgsp1_rep	five_prime_UTR	22189044	22189237	.	+	.	Parent=Os04t0444900-01
Chr04	irgsp1_rep	CDS	22189238	22189349	.	+	0	Parent=Os04t0444900-01
Chr04	irgsp1_rep	CDS	22189484	22189516	.	+	2	Parent=Os04t0444900-01
Chr04	irgsp1_rep	CDS	22190341	22190569	.	+	2	Parent=Os04t0444900-01
Chr04	irgsp1_rep	CDS	22191058	22191175	.	+	1	Parent=Os04t0444900-01
Chr04	irgsp1_rep	CDS	22191259	22191537	.	+	0	Parent=Os04t0444900-01
Chr04	irgsp1_rep	three_prime_UTR	22191538	22191821	.	+	.	Parent=Os04t0444900-01
Chr04	irgsp1_rep	mRNA	22192042	22194604	.	-	.	ID=Os04t0445000-01;Name=Os04t0445000-01;Locus_id=Os04g0445000;CGSNL Gene Symbol=SKOR;CGSNL Gene Name=STELAR K+ OUTWARD RECTIFIER;Oryzabase Gene Symbol Synonym(s)=OsSKOR%2C OsK5.1%2C K5.1;Oryzabase Gene Name Synonym(s)=stelar K+ outward rectifier;Note=Similar to Potassium channel SKOR (Stelar K(+) outward rectifying channel).;Transcript_evidence=AK105506 (DDBJ%2C Best hit);ORF_evidence=Q01J41 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Cyclic nucleotide-binding domain (IPR000595),Ankyrin repeat (IPR002110),RmlC-like jelly roll fold (IPR014710),Cyclic nucleotide-binding-like (IPR018490),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=001-127-D12;Oryzabase=21878;Expression=AK105506;TENOR=Os04t0445000-01;KEGG=Os04t0445000-01
Chr04	irgsp1_rep	five_prime_UTR	22194411	22194604	.	-	.	Parent=Os04t0445000-01
Chr04	irgsp1_rep	CDS	22194102	22194410	.	-	0	Parent=Os04t0445000-01
Chr04	irgsp1_rep	CDS	22193851	22193931	.	-	0	Parent=Os04t0445000-01
Chr04	irgsp1_rep	CDS	22193664	22193762	.	-	0	Parent=Os04t0445000-01
Chr04	irgsp1_rep	CDS	22193304	22193525	.	-	0	Parent=Os04t0445000-01
Chr04	irgsp1_rep	CDS	22193014	22193202	.	-	0	Parent=Os04t0445000-01
Chr04	irgsp1_rep	CDS	22192729	22192804	.	-	0	Parent=Os04t0445000-01
Chr04	irgsp1_rep	CDS	22192327	22192621	.	-	2	Parent=Os04t0445000-01
Chr04	irgsp1_rep	CDS	22192129	22192222	.	-	1	Parent=Os04t0445000-01
Chr04	irgsp1_rep	three_prime_UTR	22192042	22192128	.	-	.	Parent=Os04t0445000-01
Chr04	irgsp1_rep	mRNA	22192330	22193534	.	+	.	ID=Os04t0445025-00;Name=Os04t0445025-00;Locus_id=Os04g0445025;Note=Non-protein coding transcript.;Transcript_evidence=EU946793 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0445025-00
Chr04	irgsp1_rep	exon	22192330	22192508	.	+	.	Parent=Os04t0445025-00
Chr04	irgsp1_rep	exon	22193003	22193155	.	+	.	Parent=Os04t0445025-00
Chr04	irgsp1_rep	exon	22193356	22193534	.	+	.	Parent=Os04t0445025-00
Chr04	irgsp1_rep	mRNA	22196062	22196846	.	+	.	ID=Os04t0445050-01;Name=Os04t0445050-01;Locus_id=Os04g0445050;Note=Non-protein coding transcript.;Transcript_evidence=AK241739 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065201J04;TENOR=Os04t0445050-01
Chr04	irgsp1_rep	exon	22196062	22196846	.	+	.	Parent=Os04t0445050-01
Chr04	irgsp1_rep	mRNA	22200999	22201929	.	+	.	ID=Os04t0445100-01;Name=Os04t0445100-01;Locus_id=Os04g0445100;Oryzabase Gene Symbol Synonym(s)=hsp20;Note=Similar to 22.7 kDa class IV heat shock protein precursor.;Transcript_evidence=AK063700 (DDBJ%2C Best hit);ORF_evidence=Q01J40 (UniProt);InterPro=Heat shock protein Hsp20 (IPR002068),HSP20-like chaperone (IPR008978);NIAS_FLcDNA=001-119-G08;Oryzabase=23573;Expression=AK063700;TENOR=Os04t0445100-01;KEGG=Os04t0445100-01
Chr04	irgsp1_rep	five_prime_UTR	22200999	22201107	.	+	.	Parent=Os04t0445100-01
Chr04	irgsp1_rep	CDS	22201108	22201755	.	+	0	Parent=Os04t0445100-01
Chr04	irgsp1_rep	three_prime_UTR	22201756	22201929	.	+	.	Parent=Os04t0445100-01
Chr04	irgsp1_rep	mRNA	22201022	22201649	.	-	.	ID=Os04t0445150-00;Name=Os04t0445150-00;Locus_id=Os04g0445150;Note=Hypothetical protein.;Transcript_evidence=BT016978 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0445150-00
Chr04	irgsp1_rep	five_prime_UTR	22201648	22201649	.	-	.	Parent=Os04t0445150-00
Chr04	irgsp1_rep	CDS	22201356	22201647	.	-	0	Parent=Os04t0445150-00
Chr04	irgsp1_rep	CDS	22201076	22201251	.	-	2	Parent=Os04t0445150-00
Chr04	irgsp1_rep	three_prime_UTR	22201022	22201075	.	-	.	Parent=Os04t0445150-00
Chr04	irgsp1_rep	mRNA	22203158	22203891	.	-	.	ID=Os04t0445200-01;Name=Os04t0445200-01;Locus_id=Os04g0445200;Note=RmlC-like jelly roll fold domain containing protein.;Transcript_evidence=AK062427 (DDBJ%2C Best hit),AK119720 (DDBJ%2C Best hit);ORF_evidence=Q01J39 (UniProt);InterPro=Domain of unknown function DUF861%2C cupin-3 (IPR008579),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710);NIAS_FLcDNA=001-102-H05,002-157-G07;TENOR=Os04t0445200-01
Chr04	irgsp1_rep	five_prime_UTR	22203870	22203891	.	-	.	Parent=Os04t0445200-01
Chr04	irgsp1_rep	CDS	22203613	22203869	.	-	0	Parent=Os04t0445200-01
Chr04	irgsp1_rep	CDS	22203321	22203528	.	-	1	Parent=Os04t0445200-01
Chr04	irgsp1_rep	three_prime_UTR	22203158	22203320	.	-	.	Parent=Os04t0445200-01
Chr04	irgsp1_rep	mRNA	22205218	22205909	.	+	.	ID=Os04t0445300-01;Name=Os04t0445300-01;Locus_id=Os04g0445300;Note=Pectinesterase inhibitor domain containing protein.;Transcript_evidence=AK063073 (DDBJ%2C Best hit);ORF_evidence=Q01J38 (UniProt);GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);NIAS_FLcDNA=001-110-H04;Expression=AK063073;TENOR=Os04t0445300-01;KEGG=Os04t0445300-01
Chr04	irgsp1_rep	five_prime_UTR	22205218	22205246	.	+	.	Parent=Os04t0445300-01
Chr04	irgsp1_rep	CDS	22205247	22205825	.	+	0	Parent=Os04t0445300-01
Chr04	irgsp1_rep	three_prime_UTR	22205826	22205909	.	+	.	Parent=Os04t0445300-01
Chr04	irgsp1_rep	mRNA	22206784	22209481	.	+	.	ID=Os04t0445400-01;Name=Os04t0445400-01;Locus_id=Os04g0445400;Note=Similar to OSIGBa0140O07.6 protein.;Transcript_evidence=AK108515 (DDBJ%2C Best hit);ORF_evidence=Q01J37 (UniProt);NIAS_FLcDNA=002-144-A09;Expression=AK108515;TENOR=Os04t0445400-01;KEGG=Os04t0445400-01
Chr04	irgsp1_rep	five_prime_UTR	22206784	22206997	.	+	.	Parent=Os04t0445400-01
Chr04	irgsp1_rep	CDS	22206998	22207178	.	+	0	Parent=Os04t0445400-01
Chr04	irgsp1_rep	CDS	22208016	22208157	.	+	2	Parent=Os04t0445400-01
Chr04	irgsp1_rep	CDS	22208247	22208348	.	+	1	Parent=Os04t0445400-01
Chr04	irgsp1_rep	CDS	22208824	22208897	.	+	1	Parent=Os04t0445400-01
Chr04	irgsp1_rep	CDS	22209067	22209164	.	+	2	Parent=Os04t0445400-01
Chr04	irgsp1_rep	three_prime_UTR	22209165	22209481	.	+	.	Parent=Os04t0445400-01
Chr04	irgsp1_rep	mRNA	22212579	22214401	.	+	.	ID=Os04t0445600-00;Name=Os04t0445600-00;Locus_id=Os04g0445600;CGSNL Gene Symbol=MSL20;CGSNL Gene Name=MYB/SANT-LIKE 20;Oryzabase Gene Symbol Synonym(s)=OsMSL20;Oryzabase Gene Name Synonym(s)=Myb/SANT-LIKE 20;Note=Homeodomain-like containing protein.;Transcript_evidence=CT837970 (DDBJ%2C Best hit);ORF_evidence=Q01J36 (UniProt);Oryzabase=22960;TENOR=Os04t0445600-00;KEGG=Os04t0445600-00
Chr04	irgsp1_rep	five_prime_UTR	22212579	22212862	.	+	.	Parent=Os04t0445600-00
Chr04	irgsp1_rep	CDS	22212863	22214116	.	+	0	Parent=Os04t0445600-00
Chr04	irgsp1_rep	three_prime_UTR	22214117	22214401	.	+	.	Parent=Os04t0445600-00
Chr04	irgsp1_rep	mRNA	22216936	22221343	.	-	.	ID=Os04t0445700-01;Name=Os04t0445700-01;Locus_id=Os04g0445700;Note=Similar to OSIGBa0140O07.8 protein.;Transcript_evidence=AK120916 (DDBJ%2C Best hit);ORF_evidence=A2XTX6 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: metabolic process (GO:0008152),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Beta-ketoacyl synthase (IPR000794),Beta-ketoacyl synthase%2C N-terminal (IPR014030),Beta-ketoacyl synthase%2C C-terminal (IPR014031),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039),3-oxoacyl-[acyl-carrier-protein] synthase 2 (IPR017568),Beta-ketoacyl synthase%2C active site (IPR018201);NIAS_FLcDNA=J023034I15;Expression=AK120916;TENOR=Os04t0445700-01;KEGG=Os04t0445700-01 (EC:2.3.1.179)
Chr04	irgsp1_rep	five_prime_UTR	22221109	22221343	.	-	.	Parent=Os04t0445700-01
Chr04	irgsp1_rep	CDS	22220677	22221108	.	-	0	Parent=Os04t0445700-01
Chr04	irgsp1_rep	CDS	22219184	22219615	.	-	0	Parent=Os04t0445700-01
Chr04	irgsp1_rep	CDS	22218505	22218678	.	-	0	Parent=Os04t0445700-01
Chr04	irgsp1_rep	CDS	22218043	22218156	.	-	0	Parent=Os04t0445700-01
Chr04	irgsp1_rep	CDS	22217833	22217934	.	-	0	Parent=Os04t0445700-01
Chr04	irgsp1_rep	CDS	22217581	22217647	.	-	0	Parent=Os04t0445700-01
Chr04	irgsp1_rep	CDS	22217218	22217285	.	-	2	Parent=Os04t0445700-01
Chr04	irgsp1_rep	three_prime_UTR	22216936	22217217	.	-	.	Parent=Os04t0445700-01
Chr04	irgsp1_rep	mRNA	22216985	22221294	.	-	.	ID=Os04t0445700-02;Name=Os04t0445700-02;Locus_id=Os04g0445700;Note=Similar to 3-oxoacyl-[acyl-carrier-protein] synthase I%2C chloroplast precursor (EC 2.3.1.41) (Beta-ketoacyl-ACP synthase I) (KAS I).;Transcript_evidence=AK071888 (DDBJ%2C Best hit);ORF_evidence=Q01J35 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: metabolic process (GO:0008152),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Beta-ketoacyl synthase (IPR000794),Beta-ketoacyl synthase%2C N-terminal (IPR014030),Beta-ketoacyl synthase%2C C-terminal (IPR014031),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039),3-oxoacyl-[acyl-carrier-protein] synthase 2 (IPR017568),Beta-ketoacyl synthase%2C active site (IPR018201);NIAS_FLcDNA=J013046E01;Expression=AK071888;TENOR=Os04t0445700-02;KEGG=Os04t0445700-02 (EC:2.3.1.179%2C EC:2.3.1.41)
Chr04	irgsp1_rep	five_prime_UTR	22221109	22221294	.	-	.	Parent=Os04t0445700-02
Chr04	irgsp1_rep	CDS	22221044	22221108	.	-	0	Parent=Os04t0445700-02
Chr04	irgsp1_rep	CDS	22220677	22220983	.	-	1	Parent=Os04t0445700-02
Chr04	irgsp1_rep	CDS	22219184	22219615	.	-	0	Parent=Os04t0445700-02
Chr04	irgsp1_rep	CDS	22218505	22218678	.	-	0	Parent=Os04t0445700-02
Chr04	irgsp1_rep	CDS	22218043	22218156	.	-	0	Parent=Os04t0445700-02
Chr04	irgsp1_rep	CDS	22217833	22217934	.	-	0	Parent=Os04t0445700-02
Chr04	irgsp1_rep	CDS	22217581	22217647	.	-	0	Parent=Os04t0445700-02
Chr04	irgsp1_rep	CDS	22217218	22217285	.	-	2	Parent=Os04t0445700-02
Chr04	irgsp1_rep	three_prime_UTR	22216985	22217217	.	-	.	Parent=Os04t0445700-02
Chr04	irgsp1_rep	mRNA	22223723	22227030	.	+	.	ID=Os04t0445800-01;Name=Os04t0445800-01;Locus_id=Os04g0445800;Oryzabase Gene Name Synonym(s)=Sm gene%2C Sm family protein;Note=Like-Sm ribonucleoprotein%2C core domain containing protein.;Transcript_evidence=AK099454 (DDBJ%2C Best hit);ORF_evidence=Q01J34 (UniProt);InterPro=Like-Sm ribonucleoprotein (LSM) domain (IPR001163),Like-Sm ribonucleoprotein (LSM) domain%2C eukaryotic/archaea-type (IPR006649),Like-Sm ribonucleoprotein (LSM)-related domain (IPR010920);NIAS_FLcDNA=J013022L10;Oryzabase=15645;Expression=AK099454;TENOR=Os04t0445800-01;KEGG=Os04t0445800-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22223723	22223951	.	+	.	Parent=Os04t0445800-01
Chr04	irgsp1_rep	CDS	22223952	22224015	.	+	0	Parent=Os04t0445800-01
Chr04	irgsp1_rep	CDS	22225783	22225851	.	+	2	Parent=Os04t0445800-01
Chr04	irgsp1_rep	CDS	22225942	22226057	.	+	2	Parent=Os04t0445800-01
Chr04	irgsp1_rep	CDS	22226146	22226208	.	+	0	Parent=Os04t0445800-01
Chr04	irgsp1_rep	CDS	22226748	22226825	.	+	0	Parent=Os04t0445800-01
Chr04	irgsp1_rep	three_prime_UTR	22226826	22227030	.	+	.	Parent=Os04t0445800-01
Chr04	irgsp1_rep	mRNA	22223920	22226899	.	-	.	ID=Os04t0445850-00;Name=Os04t0445850-00;Locus_id=Os04g0445850;Note=Non-protein coding transcript.;Transcript_evidence=BT016332 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0445850-00;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	exon	22226731	22226899	.	-	.	Parent=Os04t0445850-00
Chr04	irgsp1_rep	exon	22226148	22226194	.	-	.	Parent=Os04t0445850-00
Chr04	irgsp1_rep	exon	22225925	22226059	.	-	.	Parent=Os04t0445850-00
Chr04	irgsp1_rep	exon	22225789	22225834	.	-	.	Parent=Os04t0445850-00
Chr04	irgsp1_rep	exon	22223920	22224023	.	-	.	Parent=Os04t0445850-00
Chr04	irgsp1_rep	mRNA	22229872	22230561	.	-	.	ID=Os04t0445900-00;Name=Os04t0445900-00;Locus_id=Os04g0445900;Note=Similar to OSIGBa0140O07.10 protein.;Transcript_evidence=CT835075 (DDBJ%2C Best hit);ORF_evidence=Q01J33 (UniProt);TENOR=Os04t0445900-00;KEGG=Os04t0445900-00
Chr04	irgsp1_rep	five_prime_UTR	22230560	22230561	.	-	.	Parent=Os04t0445900-00
Chr04	irgsp1_rep	CDS	22230086	22230559	.	-	0	Parent=Os04t0445900-00
Chr04	irgsp1_rep	three_prime_UTR	22229872	22230085	.	-	.	Parent=Os04t0445900-00
Chr04	irgsp1_rep	mRNA	22231245	22236732	.	+	.	ID=Os04t0446000-01;Name=Os04t0446000-01;Locus_id=Os04g0446000;Note=Similar to OSIGBa0140O07.11 protein.;Transcript_evidence=AK289039 (DDBJ%2C Best hit);ORF_evidence=Q01J32 (UniProt);InterPro=Tubby%2C C-terminal (IPR000007),Protein of unknown function DUF567 (IPR007612);NIAS_FLcDNA=J090091N23;TENOR=Os04t0446000-01;KEGG=Os04t0446000-01
Chr04	irgsp1_rep	five_prime_UTR	22231245	22236573	.	+	.	Parent=Os04t0446000-01
Chr04	irgsp1_rep	CDS	22236574	22236732	.	+	0	Parent=Os04t0446000-01
Chr04	irgsp1_rep	mRNA	22239372	22242241	.	+	.	ID=Os04t0446050-01;Name=Os04t0446050-01;Locus_id=Os04g0446050;Note=Hypothetical gene.;Transcript_evidence=AK287856 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065197A03;TENOR=Os04t0446050-01;KEGG=Os04t0446050-01
Chr04	irgsp1_rep	five_prime_UTR	22239372	22239902	.	+	.	Parent=Os04t0446050-01
Chr04	irgsp1_rep	five_prime_UTR	22240348	22241802	.	+	.	Parent=Os04t0446050-01
Chr04	irgsp1_rep	CDS	22241803	22242207	.	+	0	Parent=Os04t0446050-01
Chr04	irgsp1_rep	three_prime_UTR	22242208	22242241	.	+	.	Parent=Os04t0446050-01
Chr04	irgsp1_rep	mRNA	22239380	22242286	.	-	.	ID=Os04t0446100-00;Name=Os04t0446100-00;Locus_id=Os04g0446100;Note=Similar to OSIGBa0140O07.12 protein.;Transcript_evidence=AK374882 (DDBJ);ORF_evidence=Q01J31 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os04t0446100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22242205	22242286	.	-	.	Parent=Os04t0446100-00
Chr04	irgsp1_rep	CDS	22240453	22242204	.	-	0	Parent=Os04t0446100-00
Chr04	irgsp1_rep	three_prime_UTR	22240335	22240452	.	-	.	Parent=Os04t0446100-00
Chr04	irgsp1_rep	three_prime_UTR	22239380	22239902	.	-	.	Parent=Os04t0446100-00
Chr04	irgsp1_rep	mRNA	22243767	22246346	.	+	.	ID=Os04t0446200-01;Name=Os04t0446200-01;Locus_id=Os04g0446200;Note=Similar to OSIGBa0140O07.13 protein.;Transcript_evidence=AK287672 (DDBJ%2C Best hit);ORF_evidence=Q01J30 (UniProt);NIAS_FLcDNA=J065120O17;TENOR=Os04t0446200-01;KEGG=Os04t0446200-01
Chr04	irgsp1_rep	five_prime_UTR	22243767	22243918	.	+	.	Parent=Os04t0446200-01
Chr04	irgsp1_rep	CDS	22243919	22244095	.	+	0	Parent=Os04t0446200-01
Chr04	irgsp1_rep	CDS	22244488	22244685	.	+	0	Parent=Os04t0446200-01
Chr04	irgsp1_rep	three_prime_UTR	22244686	22245893	.	+	.	Parent=Os04t0446200-01
Chr04	irgsp1_rep	three_prime_UTR	22246031	22246346	.	+	.	Parent=Os04t0446200-01
Chr04	irgsp1_rep	mRNA	22246672	22249716	.	-	.	ID=Os04t0446300-01;Name=Os04t0446300-01;Locus_id=Os04g0446300;Note=Microsomal signal peptidase 25 kDa subunit family protein.;Transcript_evidence=AK059953 (DDBJ%2C Best hit),AK071742 (DDBJ%2C Best hit),AK099024 (DDBJ%2C Best hit);ORF_evidence=Q01J29 (UniProt);GO=Biological Process: signal peptide processing (GO:0006465),Cellular Component: signal peptidase complex (GO:0005787),Cellular Component: integral to membrane (GO:0016021),Molecular Function: peptidase activity (GO:0008233);InterPro=Signal peptidase complex subunit 2 (IPR009582);NIAS_FLcDNA=006-211-C02,J023109J17,J013124O17;Expression=AK059953;TENOR=Os04t0446300-01;KEGG=Os04t0446300-01
Chr04	irgsp1_rep	five_prime_UTR	22249634	22249716	.	-	.	Parent=Os04t0446300-01
Chr04	irgsp1_rep	CDS	22249526	22249633	.	-	0	Parent=Os04t0446300-01
Chr04	irgsp1_rep	CDS	22249236	22249391	.	-	0	Parent=Os04t0446300-01
Chr04	irgsp1_rep	CDS	22249002	22249079	.	-	0	Parent=Os04t0446300-01
Chr04	irgsp1_rep	CDS	22247858	22248000	.	-	0	Parent=Os04t0446300-01
Chr04	irgsp1_rep	CDS	22247091	22247184	.	-	1	Parent=Os04t0446300-01
Chr04	irgsp1_rep	three_prime_UTR	22246672	22247090	.	-	.	Parent=Os04t0446300-01
Chr04	irgsp1_rep	mRNA	22255968	22257458	.	-	.	ID=Os04t0446401-00;Name=Os04t0446401-00;Locus_id=Os04g0446401;Note=Conserved hypothetical protein.;Transcript_evidence=CT836484 (DDBJ%2C Best hit);ORF_evidence=F2D398 (UniProt);TENOR=Os04t0446401-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22257379	22257458	.	-	.	Parent=Os04t0446401-00
Chr04	irgsp1_rep	CDS	22256878	22257378	.	-	0	Parent=Os04t0446401-00
Chr04	irgsp1_rep	three_prime_UTR	22255968	22256877	.	-	.	Parent=Os04t0446401-00
Chr04	irgsp1_rep	mRNA	22258294	22260852	.	+	.	ID=Os04t0446500-01;Name=Os04t0446500-01;Locus_id=Os04g0446500;Oryzabase Gene Symbol Synonym(s)=OsFKBP58%2C OsFKBP53a%2C BIP122;Oryzabase Gene Name Synonym(s)=FK506 binding protein 58%2C FK506 binding protein 53a%2C brassinosteroid receptor kinase (BRI1)-interacting protein 122%2C BRI1-interacting protein 122%2C brassinosteroid receptor kinase-interacting protein 122;Note=Similar to OSIGBa0140O07.15 protein.;Transcript_evidence=AK073743 (DDBJ%2C Best hit);ORF_evidence=Q01J28 (UniProt);NIAS_FLcDNA=J033067L09;Oryzabase=10045;Expression=AK073743;TENOR=Os04t0446500-01;KEGG=Os04t0446500-01 (EC:5.2.1.8)
Chr04	irgsp1_rep	five_prime_UTR	22258294	22258475	.	+	.	Parent=Os04t0446500-01
Chr04	irgsp1_rep	CDS	22258476	22258491	.	+	0	Parent=Os04t0446500-01
Chr04	irgsp1_rep	CDS	22258604	22258677	.	+	2	Parent=Os04t0446500-01
Chr04	irgsp1_rep	CDS	22258819	22259042	.	+	0	Parent=Os04t0446500-01
Chr04	irgsp1_rep	CDS	22259171	22259319	.	+	1	Parent=Os04t0446500-01
Chr04	irgsp1_rep	CDS	22259410	22259493	.	+	2	Parent=Os04t0446500-01
Chr04	irgsp1_rep	CDS	22260129	22260426	.	+	2	Parent=Os04t0446500-01
Chr04	irgsp1_rep	CDS	22260506	22260712	.	+	1	Parent=Os04t0446500-01
Chr04	irgsp1_rep	CDS	22260813	22260852	.	+	1	Parent=Os04t0446500-01
Chr04	irgsp1_rep	mRNA	22258295	22262579	.	+	.	ID=Os04t0446500-02;Name=Os04t0446500-02;Locus_id=Os04g0446500;Oryzabase Gene Symbol Synonym(s)=OsFKBP58%2C OsFKBP53a%2C BIP122;Oryzabase Gene Name Synonym(s)=FK506 binding protein 58%2C FK506 binding protein 53a%2C brassinosteroid receptor kinase (BRI1)-interacting protein 122%2C BRI1-interacting protein 122%2C brassinosteroid receptor kinase-interacting protein 122;Note=Similar to FK506-binding protein 2 precursor (EC 5.2.1.8) (Peptidyl-prolyl cis- trans isomerase) (PPIase) (Rotamase) (FKBP-13) (FKBP-15).;Transcript_evidence=AK103814 (DDBJ%2C Best hit);ORF_evidence=Q01J28 (UniProt);GO=Biological Process: protein folding (GO:0006457);InterPro=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type%2C domain (IPR001179),Peptidyl-prolyl cis-trans isomerase%2C FKBP-type (IPR023566);NIAS_FLcDNA=J033147C19;Oryzabase=10045;Expression=AK103814;TENOR=Os04t0446500-02;KEGG=Os04t0446500-02 (EC:5.2.1.8)
Chr04	irgsp1_rep	five_prime_UTR	22258295	22258475	.	+	.	Parent=Os04t0446500-02
Chr04	irgsp1_rep	CDS	22258476	22258491	.	+	0	Parent=Os04t0446500-02
Chr04	irgsp1_rep	CDS	22258604	22258677	.	+	2	Parent=Os04t0446500-02
Chr04	irgsp1_rep	CDS	22258819	22259042	.	+	0	Parent=Os04t0446500-02
Chr04	irgsp1_rep	CDS	22259171	22259319	.	+	1	Parent=Os04t0446500-02
Chr04	irgsp1_rep	CDS	22259410	22259493	.	+	2	Parent=Os04t0446500-02
Chr04	irgsp1_rep	CDS	22260129	22260426	.	+	2	Parent=Os04t0446500-02
Chr04	irgsp1_rep	CDS	22260506	22260712	.	+	1	Parent=Os04t0446500-02
Chr04	irgsp1_rep	CDS	22260813	22261083	.	+	1	Parent=Os04t0446500-02
Chr04	irgsp1_rep	CDS	22261319	22261403	.	+	0	Parent=Os04t0446500-02
Chr04	irgsp1_rep	CDS	22261489	22261530	.	+	2	Parent=Os04t0446500-02
Chr04	irgsp1_rep	CDS	22261650	22261698	.	+	2	Parent=Os04t0446500-02
Chr04	irgsp1_rep	CDS	22262173	22262251	.	+	1	Parent=Os04t0446500-02
Chr04	irgsp1_rep	three_prime_UTR	22262252	22262579	.	+	.	Parent=Os04t0446500-02
Chr04	irgsp1_rep	mRNA	22264613	22266616	.	+	.	ID=Os04t0446600-01;Name=Os04t0446600-01;Locus_id=Os04g0446600;Note=Similar to OSIGBa0140O07.16 protein.;Transcript_evidence=AK106628 (DDBJ%2C Best hit);ORF_evidence=Q01J27 (UniProt);NIAS_FLcDNA=002-113-C10;Expression=AK106628;TENOR=Os04t0446600-01;KEGG=Os04t0446600-01
Chr04	irgsp1_rep	five_prime_UTR	22264613	22265201	.	+	.	Parent=Os04t0446600-01
Chr04	irgsp1_rep	CDS	22265202	22265817	.	+	0	Parent=Os04t0446600-01
Chr04	irgsp1_rep	CDS	22265902	22265903	.	+	2	Parent=Os04t0446600-01
Chr04	irgsp1_rep	three_prime_UTR	22265904	22266001	.	+	.	Parent=Os04t0446600-01
Chr04	irgsp1_rep	three_prime_UTR	22266109	22266616	.	+	.	Parent=Os04t0446600-01
Chr04	irgsp1_rep	mRNA	22267085	22272315	.	-	.	ID=Os04t0446700-01;Name=Os04t0446700-01;Locus_id=Os04g0446700;Note=Hypothetical protein.;Transcript_evidence=AK073019 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J023150A21;TENOR=Os04t0446700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22271786	22272315	.	-	.	Parent=Os04t0446700-01
Chr04	irgsp1_rep	five_prime_UTR	22271567	22271679	.	-	.	Parent=Os04t0446700-01
Chr04	irgsp1_rep	five_prime_UTR	22269092	22270223	.	-	.	Parent=Os04t0446700-01
Chr04	irgsp1_rep	CDS	22268912	22269091	.	-	0	Parent=Os04t0446700-01
Chr04	irgsp1_rep	CDS	22267620	22267925	.	-	0	Parent=Os04t0446700-01
Chr04	irgsp1_rep	three_prime_UTR	22267085	22267619	.	-	.	Parent=Os04t0446700-01
Chr04	irgsp1_rep	mRNA	22268375	22272141	.	+	.	ID=Os04t0446750-01;Name=Os04t0446750-01;Locus_id=Os04g0446750;Note=Hypothetical gene.;Transcript_evidence=AK289000 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J090088H13;TENOR=Os04t0446750-01;KEGG=Os04t0446750-01
Chr04	irgsp1_rep	five_prime_UTR	22268375	22271816	.	+	.	Parent=Os04t0446750-01
Chr04	irgsp1_rep	CDS	22271817	22272101	.	+	0	Parent=Os04t0446750-01
Chr04	irgsp1_rep	three_prime_UTR	22272102	22272141	.	+	.	Parent=Os04t0446750-01
Chr04	irgsp1_rep	mRNA	22305669	22309225	.	+	.	ID=Os04t0447100-01;Name=Os04t0447100-01;Locus_id=Os04g0447100;CGSNL Gene Symbol=SPH;CGSNL Gene Name=SPLIT-HULL;Oryzabase Gene Symbol Synonym(s)=OsLOX6%2C LOX6;Oryzabase Gene Name Synonym(s)=lipoxygenase 6%2C split-hull;Note=Similar to Lipoxygenase.;Transcript_evidence=AK287825 (DDBJ%2C Best hit);ORF_evidence=Q01J86 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: protein binding (GO:0005515),Molecular Function: lipoxygenase activity (GO:0016165),Molecular Function: oxidoreductase activity%2C acting on single donors with incorporation of molecular oxygen%2C incorporation of two atoms of oxygen (GO:0016702),Molecular Function: metal ion binding (GO:0046872);InterPro=Lipoxygenase (IPR000907),Lipoxygenase%2C LH2 (IPR001024),Lipoxygenase%2C plant (IPR001246),Lipase/lipooxygenase%2C PLAT/LH2 (IPR008976),Lipoxygenase%2C C-terminal (IPR013819),Lipoxygenase%2C iron binding site (IPR020833),Lipoxygenase%2C conserved site (IPR020834);NIAS_FLcDNA=J065184M15;Oryzabase=10390;TENOR=Os04t0447100-01;KEGG=Os04t0447100-01 (EC:1.13.11.12)
Chr04	irgsp1_rep	five_prime_UTR	22305669	22305963	.	+	.	Parent=Os04t0447100-01
Chr04	irgsp1_rep	CDS	22305964	22306507	.	+	0	Parent=Os04t0447100-01
Chr04	irgsp1_rep	CDS	22306714	22307040	.	+	2	Parent=Os04t0447100-01
Chr04	irgsp1_rep	CDS	22307208	22307293	.	+	2	Parent=Os04t0447100-01
Chr04	irgsp1_rep	CDS	22307453	22307865	.	+	0	Parent=Os04t0447100-01
Chr04	irgsp1_rep	CDS	22307960	22308226	.	+	1	Parent=Os04t0447100-01
Chr04	irgsp1_rep	CDS	22308325	22309078	.	+	1	Parent=Os04t0447100-01
Chr04	irgsp1_rep	three_prime_UTR	22309079	22309225	.	+	.	Parent=Os04t0447100-01
Chr04	irgsp1_rep	mRNA	22304995	22309225	.	+	.	ID=Os04t0447100-02;Name=Os04t0447100-02;Locus_id=Os04g0447100;RAP-DB Gene Symbol Synonym(s)=SPH;RAP-DB Gene Name Synonym(s)=SPLIT-HULL;CGSNL Gene Symbol=SPH;CGSNL Gene Name=SPLIT-HULL;Oryzabase Gene Symbol Synonym(s)=OsLOX6%2C LOX6;Oryzabase Gene Name Synonym(s)=lipoxygenase 6%2C split-hull;Note=Type-2 13-lipoxygenase%2C Control of hull splitting;Transcript_evidence=Inferred from literature;ORF_evidence=Q7XV13;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: protein binding (GO:0005515),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on single donors with incorporation of molecular oxygen%2C incorporation of two atoms of oxygen (GO:0016702),Molecular Function: metal ion binding (GO:0046872);InterPro=PLAT/LH2 domain superfamily (IPR036392),Lipoxigenase%2C C-terminal domain superfamily (IPR036226),Lipoxygenase%2C domain 3 (IPR027433),Lipoxygenase%2C plant (IPR001246),PLAT/LH2 domain (IPR001024),Lipoxygenase%2C C-terminal (IPR013819),Lipoxygenase%2C iron binding site (IPR020833),Lipoxygenase%2C conserved site (IPR020834);Manual Curation=March 27%2C 2018;Literature_PMID=29564499;Oryzabase=10390
Chr04	irgsp1_rep	CDS	22304995	22305400	.	+	0	Parent=Os04t0447100-02
Chr04	irgsp1_rep	CDS	22305992	22306510	.	+	2	Parent=Os04t0447100-02
Chr04	irgsp1_rep	CDS	22306717	22307040	.	+	2	Parent=Os04t0447100-02
Chr04	irgsp1_rep	CDS	22307208	22307293	.	+	2	Parent=Os04t0447100-02
Chr04	irgsp1_rep	CDS	22307453	22307865	.	+	0	Parent=Os04t0447100-02
Chr04	irgsp1_rep	CDS	22307960	22308226	.	+	1	Parent=Os04t0447100-02
Chr04	irgsp1_rep	CDS	22308325	22309078	.	+	1	Parent=Os04t0447100-02
Chr04	irgsp1_rep	three_prime_UTR	22309079	22309225	.	+	.	Parent=Os04t0447100-02
Chr04	irgsp1_rep	mRNA	22308320	22309009	.	-	.	ID=Os04t0447166-00;Name=Os04t0447166-00;Locus_id=Os04g0447166;Note=Hypothetical protein.;Transcript_evidence=EU945269 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0447166-00
Chr04	irgsp1_rep	CDS	22308362	22309009	.	-	0	Parent=Os04t0447166-00
Chr04	irgsp1_rep	three_prime_UTR	22308320	22308361	.	-	.	Parent=Os04t0447166-00
Chr04	irgsp1_rep	mRNA	22313157	22313951	.	-	.	ID=Os04t0447300-01;Name=Os04t0447300-01;Locus_id=Os04g0447300;Note=Conserved hypothetical protein.;Transcript_evidence=AK111006 (DDBJ%2C Best hit);ORF_evidence=Q5NA50 (UniProt);NIAS_FLcDNA=002-174-F05;Expression=AK111006;TENOR=Os04t0447300-01;KEGG=Os04t0447300-01
Chr04	irgsp1_rep	five_prime_UTR	22313784	22313951	.	-	.	Parent=Os04t0447300-01
Chr04	irgsp1_rep	CDS	22313322	22313783	.	-	0	Parent=Os04t0447300-01
Chr04	irgsp1_rep	three_prime_UTR	22313157	22313321	.	-	.	Parent=Os04t0447300-01
Chr04	irgsp1_rep	mRNA	22314079	22316433	.	-	.	ID=Os04t0447400-01;Name=Os04t0447400-01;Locus_id=Os04g0447400;Note=Similar to Glutamate decarboxylase 2 (EC 4.1.1.15) (GAD 2).;Transcript_evidence=AK070858 (DDBJ%2C Best hit);ORF_evidence=Q01J85 (UniProt);GO=Biological Process: glutamate metabolic process (GO:0006536),Biological Process: carboxylic acid metabolic process (GO:0019752),Molecular Function: catalytic activity (GO:0003824),Molecular Function: glutamate decarboxylase activity (GO:0004351),Molecular Function: carboxy-lyase activity (GO:0016831),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent decarboxylase (IPR002129),Glutamate decarboxylase (IPR010107),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J023068K15;Expression=AK070858;TENOR=Os04t0447400-01;KEGG=Os04t0447400-01 (EC:4.1.1.15)
Chr04	irgsp1_rep	five_prime_UTR	22316319	22316433	.	-	.	Parent=Os04t0447400-01
Chr04	irgsp1_rep	CDS	22316031	22316318	.	-	0	Parent=Os04t0447400-01
Chr04	irgsp1_rep	CDS	22315537	22315952	.	-	0	Parent=Os04t0447400-01
Chr04	irgsp1_rep	CDS	22315187	22315440	.	-	1	Parent=Os04t0447400-01
Chr04	irgsp1_rep	CDS	22315050	22315102	.	-	2	Parent=Os04t0447400-01
Chr04	irgsp1_rep	CDS	22314426	22314869	.	-	0	Parent=Os04t0447400-01
Chr04	irgsp1_rep	three_prime_UTR	22314079	22314425	.	-	.	Parent=Os04t0447400-01
Chr04	irgsp1_rep	mRNA	22316723	22319604	.	+	.	ID=Os04t0447500-01;Name=Os04t0447500-01;Locus_id=Os04g0447500;Note=Similar to NADPH-dependent codeinone reductase (EC 1.1.1.247).;Transcript_evidence=AK064090 (DDBJ%2C Best hit);ORF_evidence=Q01J84 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldo/keto reductase (IPR001395),Aldo/keto reductase%2C conserved site (IPR018170),Aldo/keto reductase subgroup (IPR020471),NADP-dependent oxidoreductase domain (IPR023210);NIAS_FLcDNA=002-100-D06;Expression=AK064090;TENOR=Os04t0447500-01;KEGG=Os04t0447500-01 (EC:1.1.1.247)
Chr04	irgsp1_rep	five_prime_UTR	22316723	22316816	.	+	.	Parent=Os04t0447500-01
Chr04	irgsp1_rep	CDS	22316817	22317166	.	+	0	Parent=Os04t0447500-01
Chr04	irgsp1_rep	CDS	22317786	22318029	.	+	1	Parent=Os04t0447500-01
Chr04	irgsp1_rep	CDS	22318221	22318400	.	+	0	Parent=Os04t0447500-01
Chr04	irgsp1_rep	CDS	22319191	22319418	.	+	0	Parent=Os04t0447500-01
Chr04	irgsp1_rep	three_prime_UTR	22319419	22319604	.	+	.	Parent=Os04t0447500-01
Chr04	irgsp1_rep	mRNA	22316852	22319418	.	-	.	ID=Os04t0447533-00;Name=Os04t0447533-00;Locus_id=Os04g0447533;Note=Hypothetical protein.;Transcript_evidence=AK375890 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0447533-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22319116	22319418	.	-	.	Parent=Os04t0447533-00
Chr04	irgsp1_rep	five_prime_UTR	22318175	22318416	.	-	.	Parent=Os04t0447533-00
Chr04	irgsp1_rep	five_prime_UTR	22317780	22318069	.	-	.	Parent=Os04t0447533-00
Chr04	irgsp1_rep	CDS	22317749	22317779	.	-	0	Parent=Os04t0447533-00
Chr04	irgsp1_rep	CDS	22316852	22317208	.	-	2	Parent=Os04t0447533-00
Chr04	irgsp1_rep	mRNA	22321306	22322331	.	-	.	ID=Os04t0447566-00;Name=Os04t0447566-00;Locus_id=Os04g0447566;Note=Hypothetical gene.;Transcript_evidence=EU946224 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0447566-00;KEGG=Os04t0447566-00
Chr04	irgsp1_rep	five_prime_UTR	22322207	22322331	.	-	.	Parent=Os04t0447566-00
Chr04	irgsp1_rep	CDS	22322103	22322206	.	-	0	Parent=Os04t0447566-00
Chr04	irgsp1_rep	CDS	22321793	22321993	.	-	1	Parent=Os04t0447566-00
Chr04	irgsp1_rep	CDS	22321306	22321633	.	-	1	Parent=Os04t0447566-00
Chr04	irgsp1_rep	mRNA	22321302	22323516	.	+	.	ID=Os04t0447600-01;Name=Os04t0447600-01;Locus_id=Os04g0447600;Note=Similar to NADPH-dependent codeinone reductase (EC 1.1.1.247).;Transcript_evidence=AK061282 (DDBJ%2C Best hit);ORF_evidence=Q01J83 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldo/keto reductase (IPR001395),Aldo/keto reductase%2C conserved site (IPR018170),Aldo/keto reductase subgroup (IPR020471),NADP-dependent oxidoreductase domain (IPR023210);NIAS_FLcDNA=006-212-F11;Expression=AK061282;TENOR=Os04t0447600-01;KEGG=Os04t0447600-01 (EC:1.1.1.247)
Chr04	irgsp1_rep	five_prime_UTR	22321302	22321321	.	+	.	Parent=Os04t0447600-01
Chr04	irgsp1_rep	CDS	22321322	22321638	.	+	0	Parent=Os04t0447600-01
Chr04	irgsp1_rep	CDS	22321789	22322032	.	+	1	Parent=Os04t0447600-01
Chr04	irgsp1_rep	CDS	22322145	22322324	.	+	0	Parent=Os04t0447600-01
Chr04	irgsp1_rep	CDS	22323097	22323327	.	+	0	Parent=Os04t0447600-01
Chr04	irgsp1_rep	three_prime_UTR	22323328	22323516	.	+	.	Parent=Os04t0447600-01
Chr04	irgsp1_rep	mRNA	22323986	22324931	.	-	.	ID=Os04t0447650-00;Name=Os04t0447650-00;Locus_id=Os04g0447650;Note=Hypothetical gene.;Transcript_evidence=EU946224 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0447650-00
Chr04	irgsp1_rep	five_prime_UTR	22324733	22324931	.	-	.	Parent=Os04t0447650-00
Chr04	irgsp1_rep	five_prime_UTR	22324630	22324634	.	-	.	Parent=Os04t0447650-00
Chr04	irgsp1_rep	CDS	22324436	22324629	.	-	0	Parent=Os04t0447650-00
Chr04	irgsp1_rep	CDS	22323986	22324329	.	-	1	Parent=Os04t0447650-00
Chr04	irgsp1_rep	mRNA	22323860	22326881	.	+	.	ID=Os04t0447700-01;Name=Os04t0447700-01;Locus_id=Os04g0447700;Note=Similar to Polyketide reductase.;Transcript_evidence=AK108048 (DDBJ%2C Best hit);ORF_evidence=Q01J82 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldo/keto reductase (IPR001395),Aldo/keto reductase%2C conserved site (IPR018170),Aldo/keto reductase subgroup (IPR020471),NADP-dependent oxidoreductase domain (IPR023210);NIAS_FLcDNA=002-137-F08;Expression=AK108048;TENOR=Os04t0447700-01;KEGG=Os04t0447700-01
Chr04	irgsp1_rep	five_prime_UTR	22323860	22323881	.	+	.	Parent=Os04t0447700-01
Chr04	irgsp1_rep	CDS	22323882	22324300	.	+	0	Parent=Os04t0447700-01
Chr04	irgsp1_rep	CDS	22324405	22324648	.	+	1	Parent=Os04t0447700-01
Chr04	irgsp1_rep	CDS	22324743	22324922	.	+	0	Parent=Os04t0447700-01
Chr04	irgsp1_rep	CDS	22326403	22326633	.	+	0	Parent=Os04t0447700-01
Chr04	irgsp1_rep	three_prime_UTR	22326634	22326881	.	+	.	Parent=Os04t0447700-01
Chr04	irgsp1_rep	mRNA	22330191	22332343	.	+	.	ID=Os04t0447800-01;Name=Os04t0447800-01;Locus_id=Os04g0447800;CGSNL Gene Symbol=GAD2;CGSNL Gene Name=GLUTAMATE DECARBOXYLASE 2;Oryzabase Gene Symbol Synonym(s)=OsGAD2;Oryzabase Gene Name Synonym(s)=glutamate decarboxylase 2;Note=Glutamate decarboxylase (EC 4.1.1.15).;Transcript_evidence=AK068340 (DDBJ%2C Best hit);ORF_evidence=Q01J81 (UniProt);GO=Biological Process: glutamate metabolic process (GO:0006536),Biological Process: carboxylic acid metabolic process (GO:0019752),Molecular Function: catalytic activity (GO:0003824),Molecular Function: glutamate decarboxylase activity (GO:0004351),Molecular Function: carboxy-lyase activity (GO:0016831),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent decarboxylase (IPR002129),Glutamate decarboxylase (IPR010107),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J013151F09;Oryzabase=14092;Expression=AK068340;TENOR=Os04t0447800-01;KEGG=Os04t0447800-01 (EC:4.1.1.15)
Chr04	irgsp1_rep	five_prime_UTR	22330191	22330281	.	+	.	Parent=Os04t0447800-01
Chr04	irgsp1_rep	CDS	22330282	22330575	.	+	0	Parent=Os04t0447800-01
Chr04	irgsp1_rep	CDS	22330680	22331350	.	+	0	Parent=Os04t0447800-01
Chr04	irgsp1_rep	CDS	22331442	22331496	.	+	1	Parent=Os04t0447800-01
Chr04	irgsp1_rep	CDS	22331702	22332184	.	+	0	Parent=Os04t0447800-01
Chr04	irgsp1_rep	three_prime_UTR	22332185	22332343	.	+	.	Parent=Os04t0447800-01
Chr04	irgsp1_rep	mRNA	22332663	22333423	.	-	.	ID=Os04t0447900-00;Name=Os04t0447900-00;Locus_id=Os04g0447900;Oryzabase Gene Symbol Synonym(s)=OsOFP24%2C OsOFP15;Oryzabase Gene Name Synonym(s)=OVATE family protein 24%2C ovate family protein 15%2C OVATE-domain containing protein 15;Note=Domain of unknown function DUF623 domain containing protein.;Transcript_evidence=AK376132 (DDBJ);ORF_evidence=A2XTZ6 (UniProt);InterPro=Domain of unknown function DUF623 (IPR006458);Oryzabase=18320;TENOR=Os04t0447900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22333108	22333423	.	-	.	Parent=Os04t0447900-00
Chr04	irgsp1_rep	CDS	22332676	22333107	.	-	0	Parent=Os04t0447900-00
Chr04	irgsp1_rep	three_prime_UTR	22332663	22332675	.	-	.	Parent=Os04t0447900-00
Chr04	irgsp1_rep	mRNA	22335006	22337094	.	-	.	ID=Os04t0447950-00;Name=Os04t0447950-00;Locus_id=Os04g0447950;Note=Hypothetical protein.;Transcript_evidence=tplb0026b15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0447950-00
Chr04	irgsp1_rep	five_prime_UTR	22336970	22337094	.	-	.	Parent=Os04t0447950-00
Chr04	irgsp1_rep	five_prime_UTR	22336148	22336339	.	-	.	Parent=Os04t0447950-00
Chr04	irgsp1_rep	CDS	22336010	22336147	.	-	0	Parent=Os04t0447950-00
Chr04	irgsp1_rep	CDS	22335006	22335902	.	-	0	Parent=Os04t0447950-00
Chr04	irgsp1_rep	mRNA	22335579	22337098	.	+	.	ID=Os04t0448000-00;Name=Os04t0448000-00;Locus_id=Os04g0448000;Note=Similar to OSIGBa0152K17.7 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01J80 (UniProt);InterPro=Protein of unknown function DUF3537 (IPR021924);TENOR=Os04t0448000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	22335579	22335881	.	+	0	Parent=Os04t0448000-00
Chr04	irgsp1_rep	CDS	22335987	22336326	.	+	0	Parent=Os04t0448000-00
Chr04	irgsp1_rep	CDS	22336962	22337098	.	+	2	Parent=Os04t0448000-00
Chr04	irgsp1_rep	mRNA	22337500	22339890	.	-	.	ID=Os04t0448100-01;Name=Os04t0448100-01;Locus_id=Os04g0448100;Oryzabase Gene Name Synonym(s)=DUF1644 family protein;Note=Protein of unknown function DUF1644 family protein.;Transcript_evidence=AK108771 (DDBJ%2C Best hit);ORF_evidence=Q01J79 (UniProt);InterPro=Protein of unknown function DUF1644 (IPR012866),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=002-150-H06;Oryzabase=19986;Expression=AK108771;TENOR=Os04t0448100-01;KEGG=Os04t0448100-01
Chr04	irgsp1_rep	five_prime_UTR	22339681	22339890	.	-	.	Parent=Os04t0448100-01
Chr04	irgsp1_rep	five_prime_UTR	22338632	22338643	.	-	.	Parent=Os04t0448100-01
Chr04	irgsp1_rep	CDS	22337828	22338631	.	-	0	Parent=Os04t0448100-01
Chr04	irgsp1_rep	three_prime_UTR	22337500	22337827	.	-	.	Parent=Os04t0448100-01
Chr04	irgsp1_rep	mRNA	22340794	22346455	.	+	.	ID=Os04t0448200-01;Name=Os04t0448200-01;Locus_id=Os04g0448200;Note=Similar to OSIGBa0152K17.9 protein.;Transcript_evidence=AK068842 (DDBJ%2C Best hit);ORF_evidence=Q01J78 (UniProt);NIAS_FLcDNA=J013162C23;Expression=AK068842;TENOR=Os04t0448200-01;KEGG=Os04t0448200-01
Chr04	irgsp1_rep	five_prime_UTR	22340794	22341519	.	+	.	Parent=Os04t0448200-01
Chr04	irgsp1_rep	CDS	22341520	22341622	.	+	0	Parent=Os04t0448200-01
Chr04	irgsp1_rep	CDS	22342473	22343173	.	+	2	Parent=Os04t0448200-01
Chr04	irgsp1_rep	CDS	22343273	22343359	.	+	0	Parent=Os04t0448200-01
Chr04	irgsp1_rep	CDS	22344320	22345336	.	+	0	Parent=Os04t0448200-01
Chr04	irgsp1_rep	three_prime_UTR	22345337	22346455	.	+	.	Parent=Os04t0448200-01
Chr04	irgsp1_rep	mRNA	22344353	22346461	.	+	.	ID=Os04t0448200-02;Name=Os04t0448200-02;Locus_id=Os04g0448200;Note=Similar to OSIGBa0152K17.9 protein.;Transcript_evidence=AK060713 (DDBJ%2C Best hit);ORF_evidence=Q01J78 (UniProt);NIAS_FLcDNA=001-031-C12;Expression=AK060713;TENOR=Os04t0448200-02;KEGG=Os04t0448200-02
Chr04	irgsp1_rep	CDS	22344353	22345261	.	+	0	Parent=Os04t0448200-02
Chr04	irgsp1_rep	CDS	22346027	22346077	.	+	0	Parent=Os04t0448200-02
Chr04	irgsp1_rep	three_prime_UTR	22346078	22346461	.	+	.	Parent=Os04t0448200-02
Chr04	irgsp1_rep	mRNA	22341408	22346394	.	-	.	ID=Os04t0448250-00;Name=Os04t0448250-00;Locus_id=Os04g0448250;Note=Non-protein coding transcript.;Transcript_evidence=tplb0058f15 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os04t0448250-00
Chr04	irgsp1_rep	exon	22346036	22346394	.	-	.	Parent=Os04t0448250-00
Chr04	irgsp1_rep	exon	22344318	22345271	.	-	.	Parent=Os04t0448250-00
Chr04	irgsp1_rep	exon	22343268	22343357	.	-	.	Parent=Os04t0448250-00
Chr04	irgsp1_rep	exon	22342471	22343168	.	-	.	Parent=Os04t0448250-00
Chr04	irgsp1_rep	exon	22341408	22341618	.	-	.	Parent=Os04t0448250-00
Chr04	irgsp1_rep	mRNA	22347957	22349724	.	+	.	ID=Os04t0448300-01;Name=Os04t0448300-01;Locus_id=Os04g0448300;Note=Peptidase A1 domain containing protein.;Transcript_evidence=AK120786 (DDBJ%2C Best hit);ORF_evidence=Q01J77 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J023010M08;Expression=AK120786;TENOR=Os04t0448300-01;KEGG=Os04t0448300-01
Chr04	irgsp1_rep	five_prime_UTR	22347957	22348157	.	+	.	Parent=Os04t0448300-01
Chr04	irgsp1_rep	CDS	22348158	22349522	.	+	0	Parent=Os04t0448300-01
Chr04	irgsp1_rep	three_prime_UTR	22349523	22349724	.	+	.	Parent=Os04t0448300-01
Chr04	irgsp1_rep	mRNA	22348134	22349743	.	+	.	ID=Os04t0448300-02;Name=Os04t0448300-02;Locus_id=Os04g0448300;Note=Peptidase A1 domain containing protein.;Transcript_evidence=AK109494 (DDBJ%2C Best hit);ORF_evidence=Q01J77 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=001-206-A01;Expression=AK109494;TENOR=Os04t0448300-02;KEGG=Os04t0448300-02
Chr04	irgsp1_rep	five_prime_UTR	22348134	22348157	.	+	.	Parent=Os04t0448300-02
Chr04	irgsp1_rep	CDS	22348158	22349522	.	+	0	Parent=Os04t0448300-02
Chr04	irgsp1_rep	three_prime_UTR	22349523	22349743	.	+	.	Parent=Os04t0448300-02
Chr04	irgsp1_rep	mRNA	22353707	22355207	.	+	.	ID=Os04t0448500-01;Name=Os04t0448500-01;Locus_id=Os04g0448500;RAP-DB Gene Symbol Synonym(s)=OsAP37;RAP-DB Gene Name Synonym(s)=aspartic protease 37;CGSNL Gene Symbol=AP37;CGSNL Gene Name=ASPARTIC PROTEASE 37;Oryzabase Gene Symbol Synonym(s)=OsAP37;Oryzabase Gene Name Synonym(s)=aspartic protease 37%2C E. coli cation transport protein ChaC homolog;Note=Aspartic proteinase%2C Promotion of programmed cell death;Transcript_evidence=Inferred from literature;ORF_evidence=Q7XV21;InterPro=Aspartic peptidase domain superfamily (IPR021109),Peptidase family A1 domain (IPR033121),Pepsin-like domain%2C plant (IPR034161),Xylanase inhibitor%2C N-terminal (IPR032861),Xylanase inhibitor%2C C-terminal (IPR032799);Manual Curation=October 2%2C 2020;Literature_PMID=23385589;Oryzabase=13454;TENOR=Os04t0448500-00
Chr04	irgsp1_rep	five_prime_UTR	22353707	22353812	.	+	.	Parent=Os04t0448500-01
Chr04	irgsp1_rep	CDS	22353813	22355207	.	+	0	Parent=Os04t0448500-01
Chr04	irgsp1_rep	mRNA	22353818	22355210	.	-	.	ID=Os04t0448550-00;Name=Os04t0448550-00;Locus_id=Os04g0448550;Note=Hypothetical protein.;Transcript_evidence=EU943155 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0448550-00
Chr04	irgsp1_rep	five_prime_UTR	22355138	22355210	.	-	.	Parent=Os04t0448550-00
Chr04	irgsp1_rep	CDS	22354760	22355137	.	-	0	Parent=Os04t0448550-00
Chr04	irgsp1_rep	CDS	22353818	22354697	.	-	0	Parent=Os04t0448550-00
Chr04	irgsp1_rep	mRNA	22355336	22357930	.	-	.	ID=Os04t0448600-01;Name=Os04t0448600-01;Locus_id=Os04g0448600;Note=ChaC-like protein family protein.;Transcript_evidence=AK068709 (DDBJ%2C Best hit);ORF_evidence=Q01J75 (UniProt);InterPro=ChaC-like protein (IPR006840),Butirosin biosynthesis%2C BtrG-like (IPR013024);NIAS_FLcDNA=J013159G01;TENOR=Os04t0448600-01
Chr04	irgsp1_rep	five_prime_UTR	22357850	22357930	.	-	.	Parent=Os04t0448600-01
Chr04	irgsp1_rep	CDS	22357741	22357849	.	-	0	Parent=Os04t0448600-01
Chr04	irgsp1_rep	CDS	22357517	22357593	.	-	2	Parent=Os04t0448600-01
Chr04	irgsp1_rep	CDS	22356879	22356932	.	-	0	Parent=Os04t0448600-01
Chr04	irgsp1_rep	CDS	22356430	22356486	.	-	0	Parent=Os04t0448600-01
Chr04	irgsp1_rep	CDS	22356188	22356228	.	-	0	Parent=Os04t0448600-01
Chr04	irgsp1_rep	CDS	22356002	22356073	.	-	1	Parent=Os04t0448600-01
Chr04	irgsp1_rep	CDS	22355838	22355917	.	-	1	Parent=Os04t0448600-01
Chr04	irgsp1_rep	CDS	22355686	22355759	.	-	2	Parent=Os04t0448600-01
Chr04	irgsp1_rep	three_prime_UTR	22355336	22355685	.	-	.	Parent=Os04t0448600-01
Chr04	irgsp1_rep	mRNA	22355336	22357886	.	-	.	ID=Os04t0448600-02;Name=Os04t0448600-02;Locus_id=Os04g0448600;Note=ChaC-like protein family protein.;Transcript_evidence=AK104134 (DDBJ%2C Best hit);ORF_evidence=Q01J75 (UniProt);InterPro=ChaC-like protein (IPR006840),Butirosin biosynthesis%2C BtrG-like (IPR013024);NIAS_FLcDNA=006-204-E04;TENOR=Os04t0448600-02
Chr04	irgsp1_rep	five_prime_UTR	22357850	22357886	.	-	.	Parent=Os04t0448600-02
Chr04	irgsp1_rep	CDS	22357741	22357849	.	-	0	Parent=Os04t0448600-02
Chr04	irgsp1_rep	CDS	22357517	22357593	.	-	2	Parent=Os04t0448600-02
Chr04	irgsp1_rep	CDS	22356879	22356932	.	-	0	Parent=Os04t0448600-02
Chr04	irgsp1_rep	CDS	22356430	22356486	.	-	0	Parent=Os04t0448600-02
Chr04	irgsp1_rep	CDS	22356188	22356228	.	-	0	Parent=Os04t0448600-02
Chr04	irgsp1_rep	CDS	22356002	22356073	.	-	1	Parent=Os04t0448600-02
Chr04	irgsp1_rep	CDS	22355838	22355917	.	-	1	Parent=Os04t0448600-02
Chr04	irgsp1_rep	CDS	22355686	22355759	.	-	2	Parent=Os04t0448600-02
Chr04	irgsp1_rep	three_prime_UTR	22355336	22355685	.	-	.	Parent=Os04t0448600-02
Chr04	irgsp1_rep	mRNA	22358725	22361651	.	-	.	ID=Os04t0448700-00;Name=Os04t0448700-00;Locus_id=Os04g0448700;Note=Similar to H0818E04.4 protein.;Transcript_evidence=AK334544 (DDBJ);ORF_evidence=Q01JH9 (UniProt);TENOR=Os04t0448700-00;KEGG=Os04t0448700-00
Chr04	irgsp1_rep	five_prime_UTR	22361577	22361651	.	-	.	Parent=Os04t0448700-00
Chr04	irgsp1_rep	CDS	22360858	22361576	.	-	0	Parent=Os04t0448700-00
Chr04	irgsp1_rep	CDS	22358725	22359247	.	-	1	Parent=Os04t0448700-00
Chr04	irgsp1_rep	mRNA	22362240	22367136	.	+	.	ID=Os04t0448800-01;Name=Os04t0448800-01;Locus_id=Os04g0448800;CGSNL Gene Symbol=PT17;CGSNL Gene Name=PHOSPHATE TRANSPORTER 17;Oryzabase Gene Symbol Synonym(s)=OsPT17;Oryzabase Gene Name Synonym(s)=phosphate transporter 17;Note=Similar to Mitochondrial phosphate transporter (Fragment).;Transcript_evidence=AK105021 (DDBJ%2C Best hit);ORF_evidence=Q01J73 (UniProt);InterPro=Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=001-010-E02;Oryzabase=21402;Expression=AK105021;TENOR=Os04t0448800-01;KEGG=Os04t0448800-01
Chr04	irgsp1_rep	five_prime_UTR	22362240	22362437	.	+	.	Parent=Os04t0448800-01
Chr04	irgsp1_rep	CDS	22362438	22362734	.	+	0	Parent=Os04t0448800-01
Chr04	irgsp1_rep	CDS	22363786	22364147	.	+	0	Parent=Os04t0448800-01
Chr04	irgsp1_rep	CDS	22364232	22364275	.	+	1	Parent=Os04t0448800-01
Chr04	irgsp1_rep	CDS	22366019	22366233	.	+	2	Parent=Os04t0448800-01
Chr04	irgsp1_rep	CDS	22366307	22366431	.	+	0	Parent=Os04t0448800-01
Chr04	irgsp1_rep	CDS	22366520	22366559	.	+	1	Parent=Os04t0448800-01
Chr04	irgsp1_rep	three_prime_UTR	22366560	22366569	.	+	.	Parent=Os04t0448800-01
Chr04	irgsp1_rep	three_prime_UTR	22366656	22367136	.	+	.	Parent=Os04t0448800-01
Chr04	irgsp1_rep	mRNA	22362379	22367202	.	+	.	ID=Os04t0448800-02;Name=Os04t0448800-02;Locus_id=Os04g0448800;CGSNL Gene Symbol=PT17;CGSNL Gene Name=PHOSPHATE TRANSPORTER 17;Oryzabase Gene Symbol Synonym(s)=OsPT17;Oryzabase Gene Name Synonym(s)=phosphate transporter 17;Note=Similar to Mitochondrial phosphate transporter (Fragment).;Transcript_evidence=AK069397 (DDBJ%2C Best hit);ORF_evidence=Q01J73 (UniProt);InterPro=Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J023012A09;Oryzabase=21402;Expression=AK069397;TENOR=Os04t0448800-02;KEGG=Os04t0448800-02
Chr04	irgsp1_rep	five_prime_UTR	22362379	22362437	.	+	.	Parent=Os04t0448800-02
Chr04	irgsp1_rep	CDS	22362438	22362734	.	+	0	Parent=Os04t0448800-02
Chr04	irgsp1_rep	CDS	22363786	22364147	.	+	0	Parent=Os04t0448800-02
Chr04	irgsp1_rep	CDS	22364232	22364275	.	+	1	Parent=Os04t0448800-02
Chr04	irgsp1_rep	CDS	22366019	22366233	.	+	2	Parent=Os04t0448800-02
Chr04	irgsp1_rep	CDS	22366307	22366431	.	+	0	Parent=Os04t0448800-02
Chr04	irgsp1_rep	CDS	22366520	22366559	.	+	1	Parent=Os04t0448800-02
Chr04	irgsp1_rep	three_prime_UTR	22366560	22366569	.	+	.	Parent=Os04t0448800-02
Chr04	irgsp1_rep	three_prime_UTR	22366656	22367202	.	+	.	Parent=Os04t0448800-02
Chr04	irgsp1_rep	mRNA	22369763	22376615	.	+	.	ID=Os04t0448900-01;Name=Os04t0448900-01;Locus_id=Os04g0448900;RAP-DB Gene Symbol Synonym(s)=OsABA1%2C OsZEP;RAP-DB Gene Name Synonym(s)=abscisic acid-deficient 1%2C zeaxanthin epoxidase;CGSNL Gene Symbol=ABA1;CGSNL Gene Name=ABA DEFICIENT 1;Oryzabase Gene Symbol Synonym(s)=OsABA1%2C Zep1%2C OsAba1%2C Aba2%2C OsAba2%2C OsZep1%2C Zep%2C OsZep%2C Aba1%2C OsABA2%2C Osaba1%2C OsZEP-1%2C OsZEP%2C OSZEP1%2C ZEP1%2C ZEP;Oryzabase Gene Name Synonym(s)=Zeaxanthin epoxidase 1%2C zeaxanthin epoxidase%2C abscisic acid-deficient 1;Note=Zeaxanthin epoxidase%2C Abscisic acid (ABA) biosynthesis%2C "Resistance to osmotic and drought stresses%2C seed development and dormancy"%2C Disease resistance;Transcript_evidence=AB050884;ORF_evidence=Q0JCU7;GO=Biological Process: abscisic acid biosynthetic process (GO:0009688),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: protein binding (GO:0005515),Molecular Function: zeaxanthin epoxidase [overall] activity (GO:0009540),Molecular Function: FAD binding (GO:0071949),Cellular Component: chloroplast (GO:0009507),Cellular Component: membrane (GO:0016020);InterPro=FAD/NAD(P)-binding domain superfamily (IPR036188),SMAD/FHA domain superfamily (IPR008984),Zeaxanthin epoxidase (IPR017079),FAD-binding domain (IPR002938),Forkhead-associated (FHA) domain (IPR000253);Manual Curation=February 28%2C 2020;Literature_PMID=30124364,11244106;Oryzabase=6080;Expression=AB050884;TENOR=Os04t0448900-00;KEGG=Os04t0448900-00 (EC:1.14.15.21)
Chr04	irgsp1_rep	five_prime_UTR	22369763	22369851	.	+	.	Parent=Os04t0448900-01
Chr04	irgsp1_rep	CDS	22369852	22370348	.	+	0	Parent=Os04t0448900-01
Chr04	irgsp1_rep	CDS	22373223	22373385	.	+	1	Parent=Os04t0448900-01
Chr04	irgsp1_rep	CDS	22373492	22373566	.	+	0	Parent=Os04t0448900-01
Chr04	irgsp1_rep	CDS	22373651	22373751	.	+	0	Parent=Os04t0448900-01
Chr04	irgsp1_rep	CDS	22373837	22373952	.	+	1	Parent=Os04t0448900-01
Chr04	irgsp1_rep	CDS	22374042	22374253	.	+	2	Parent=Os04t0448900-01
Chr04	irgsp1_rep	CDS	22374382	22374473	.	+	0	Parent=Os04t0448900-01
Chr04	irgsp1_rep	CDS	22374668	22374782	.	+	1	Parent=Os04t0448900-01
Chr04	irgsp1_rep	CDS	22375003	22375106	.	+	0	Parent=Os04t0448900-01
Chr04	irgsp1_rep	CDS	22375230	22375275	.	+	1	Parent=Os04t0448900-01
Chr04	irgsp1_rep	CDS	22375356	22375420	.	+	0	Parent=Os04t0448900-01
Chr04	irgsp1_rep	CDS	22375541	22375621	.	+	1	Parent=Os04t0448900-01
Chr04	irgsp1_rep	CDS	22375705	22375759	.	+	1	Parent=Os04t0448900-01
Chr04	irgsp1_rep	CDS	22375972	22376060	.	+	0	Parent=Os04t0448900-01
Chr04	irgsp1_rep	CDS	22376151	22376238	.	+	1	Parent=Os04t0448900-01
Chr04	irgsp1_rep	CDS	22376360	22376440	.	+	0	Parent=Os04t0448900-01
Chr04	irgsp1_rep	three_prime_UTR	22376441	22376615	.	+	.	Parent=Os04t0448900-01
Chr04	irgsp1_rep	mRNA	22372127	22373089	.	+	.	ID=Os04t0448950-01;Name=Os04t0448950-01;Locus_id=Os04g0448950;Note=Similar to H0818E04.7 protein.;Transcript_evidence=AK287909 (DDBJ%2C Best hit);ORF_evidence=Q01J71 (UniProt);NIAS_FLcDNA=J065212P13;TENOR=Os04t0448950-01;KEGG=Os04t0448950-01 (EC:1.14.13.90)
Chr04	irgsp1_rep	five_prime_UTR	22372127	22372310	.	+	.	Parent=Os04t0448950-01
Chr04	irgsp1_rep	CDS	22372311	22372790	.	+	0	Parent=Os04t0448950-01
Chr04	irgsp1_rep	three_prime_UTR	22372791	22373089	.	+	.	Parent=Os04t0448950-01
Chr04	irgsp1_rep	mRNA	22377034	22379151	.	+	.	ID=Os04t0449000-01;Name=Os04t0449000-01;Locus_id=Os04g0449000;Note=Similar to H0818E04.8 protein.;Transcript_evidence=AK105976 (DDBJ%2C Best hit);ORF_evidence=Q01J70 (UniProt);InterPro=Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=001-205-F07;TENOR=Os04t0449000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22377034	22377136	.	+	.	Parent=Os04t0449000-01
Chr04	irgsp1_rep	CDS	22377137	22377526	.	+	0	Parent=Os04t0449000-01
Chr04	irgsp1_rep	CDS	22378519	22378557	.	+	0	Parent=Os04t0449000-01
Chr04	irgsp1_rep	three_prime_UTR	22378558	22379151	.	+	.	Parent=Os04t0449000-01
Chr04	irgsp1_rep	mRNA	22377034	22379345	.	+	.	ID=Os04t0449000-02;Name=Os04t0449000-02;Locus_id=Os04g0449000;Note=Similar to H0818E04.8 protein.;Transcript_evidence=AK064234 (DDBJ%2C Best hit);ORF_evidence=Q01J70 (UniProt);GO=Biological Process: mitochondrial transport (GO:0006839),Cellular Component: mitochondrion (GO:0005739),Cellular Component: membrane (GO:0016020),Molecular Function: binding (GO:0005488);InterPro=Mitochondrial brown fat uncoupling protein (IPR002030),Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=002-104-H10;Expression=AK064234;TENOR=Os04t0449000-02;KEGG=Os04t0449000-02
Chr04	irgsp1_rep	five_prime_UTR	22377034	22377136	.	+	.	Parent=Os04t0449000-02
Chr04	irgsp1_rep	CDS	22377137	22377526	.	+	0	Parent=Os04t0449000-02
Chr04	irgsp1_rep	CDS	22378524	22379060	.	+	0	Parent=Os04t0449000-02
Chr04	irgsp1_rep	three_prime_UTR	22379061	22379345	.	+	.	Parent=Os04t0449000-02
Chr04	irgsp1_rep	mRNA	22381340	22383531	.	-	.	ID=Os04t0449100-01;Name=Os04t0449100-01;Locus_id=Os04g0449100;Note=Xyloglucan fucosyltransferase family protein.;Transcript_evidence=AK110929 (DDBJ%2C Best hit);ORF_evidence=Q01J69 (UniProt);GO=Biological Process: cell wall biogenesis (GO:0042546),Cellular Component: membrane (GO:0016020),Molecular Function: galactoside 2-alpha-L-fucosyltransferase activity (GO:0008107);InterPro=Xyloglucan fucosyltransferase (IPR004938);NIAS_FLcDNA=002-173-D11;Expression=AK110929;TENOR=Os04t0449100-01;KEGG=Os04t0449100-01
Chr04	irgsp1_rep	five_prime_UTR	22383363	22383531	.	-	.	Parent=Os04t0449100-01
Chr04	irgsp1_rep	CDS	22383113	22383362	.	-	0	Parent=Os04t0449100-01
Chr04	irgsp1_rep	CDS	22381488	22382998	.	-	2	Parent=Os04t0449100-01
Chr04	irgsp1_rep	three_prime_UTR	22381340	22381487	.	-	.	Parent=Os04t0449100-01
Chr04	irgsp1_rep	mRNA	22385360	22387707	.	-	.	ID=Os04t0449200-01;Name=Os04t0449200-01;Locus_id=Os04g0449200;Note=Xyloglucan fucosyltransferase family protein.;Transcript_evidence=AK073690 (DDBJ%2C Best hit);ORF_evidence=Q01J68 (UniProt);GO=Biological Process: cell wall biogenesis (GO:0042546),Cellular Component: membrane (GO:0016020),Molecular Function: galactoside 2-alpha-L-fucosyltransferase activity (GO:0008107);InterPro=Xyloglucan fucosyltransferase (IPR004938);NIAS_FLcDNA=J033055I24;Expression=AK073690;TENOR=Os04t0449200-01;KEGG=Os04t0449200-01
Chr04	irgsp1_rep	five_prime_UTR	22387674	22387707	.	-	.	Parent=Os04t0449200-01
Chr04	irgsp1_rep	CDS	22387436	22387673	.	-	0	Parent=Os04t0449200-01
Chr04	irgsp1_rep	CDS	22385643	22387153	.	-	2	Parent=Os04t0449200-01
Chr04	irgsp1_rep	three_prime_UTR	22385360	22385642	.	-	.	Parent=Os04t0449200-01
Chr04	irgsp1_rep	mRNA	22385657	22387285	.	+	.	ID=Os04t0449300-01;Name=Os04t0449300-01;Locus_id=Os04g0449300;Note=Conserved hypothetical protein.;Transcript_evidence=AK106286 (DDBJ%2C Best hit);ORF_evidence=NP_001052930.1 (RefSeq);NIAS_FLcDNA=002-101-A10;TENOR=Os04t0449300-01;KEGG=Os04t0449300-01
Chr04	irgsp1_rep	five_prime_UTR	22385657	22385753	.	+	.	Parent=Os04t0449300-01
Chr04	irgsp1_rep	CDS	22385754	22386974	.	+	0	Parent=Os04t0449300-01
Chr04	irgsp1_rep	three_prime_UTR	22386975	22387285	.	+	.	Parent=Os04t0449300-01
Chr04	irgsp1_rep	mRNA	22389359	22392243	.	-	.	ID=Os04t0449400-01;Name=Os04t0449400-01;Locus_id=Os04g0449400;Oryzabase Gene Symbol Synonym(s)=OsPP2C40%2C PP2C40%2C OsPP65;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C40%2C protein phosphatase 2C 40%2C protein phosphatase 65;Note=Similar to H0818E04.11 protein.;Transcript_evidence=AK241313 (DDBJ%2C Best hit);ORF_evidence=Q01JH2 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J065141L11;Oryzabase=17914;TENOR=Os04t0449400-01;KEGG=Os04t0449400-01
Chr04	irgsp1_rep	five_prime_UTR	22392242	22392243	.	-	.	Parent=Os04t0449400-01
Chr04	irgsp1_rep	CDS	22392149	22392241	.	-	0	Parent=Os04t0449400-01
Chr04	irgsp1_rep	CDS	22391554	22391679	.	-	0	Parent=Os04t0449400-01
Chr04	irgsp1_rep	CDS	22391241	22391482	.	-	0	Parent=Os04t0449400-01
Chr04	irgsp1_rep	CDS	22390062	22390264	.	-	1	Parent=Os04t0449400-01
Chr04	irgsp1_rep	CDS	22389946	22389980	.	-	2	Parent=Os04t0449400-01
Chr04	irgsp1_rep	three_prime_UTR	22389359	22389945	.	-	.	Parent=Os04t0449400-01
Chr04	irgsp1_rep	mRNA	22389554	22393828	.	+	.	ID=Os04t0449450-00;Name=Os04t0449450-00;Locus_id=Os04g0449450;Note=Hypothetical gene.;Transcript_evidence=BT085317 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0449450-00;KEGG=Os04t0449450-00
Chr04	irgsp1_rep	five_prime_UTR	22389554	22389986	.	+	.	Parent=Os04t0449450-00
Chr04	irgsp1_rep	five_prime_UTR	22390070	22390263	.	+	.	Parent=Os04t0449450-00
Chr04	irgsp1_rep	five_prime_UTR	22391240	22391474	.	+	.	Parent=Os04t0449450-00
Chr04	irgsp1_rep	five_prime_UTR	22391547	22391694	.	+	.	Parent=Os04t0449450-00
Chr04	irgsp1_rep	five_prime_UTR	22392169	22392258	.	+	.	Parent=Os04t0449450-00
Chr04	irgsp1_rep	five_prime_UTR	22392748	22392798	.	+	.	Parent=Os04t0449450-00
Chr04	irgsp1_rep	five_prime_UTR	22392879	22393026	.	+	.	Parent=Os04t0449450-00
Chr04	irgsp1_rep	five_prime_UTR	22393195	22393319	.	+	.	Parent=Os04t0449450-00
Chr04	irgsp1_rep	CDS	22393320	22393369	.	+	0	Parent=Os04t0449450-00
Chr04	irgsp1_rep	CDS	22393525	22393828	.	+	1	Parent=Os04t0449450-00
Chr04	irgsp1_rep	mRNA	22396531	22401800	.	-	.	ID=Os04t0449500-01;Name=Os04t0449500-01;Locus_id=Os04g0449500;Note=Similar to H0818E04.12 protein.;Transcript_evidence=AK100347 (DDBJ%2C Best hit);ORF_evidence=Q01JH1 (UniProt);NIAS_FLcDNA=J023082L12;Expression=AK100347;TENOR=Os04t0449500-01;KEGG=Os04t0449500-01
Chr04	irgsp1_rep	five_prime_UTR	22401315	22401800	.	-	.	Parent=Os04t0449500-01
Chr04	irgsp1_rep	CDS	22401188	22401314	.	-	0	Parent=Os04t0449500-01
Chr04	irgsp1_rep	CDS	22400960	22401068	.	-	2	Parent=Os04t0449500-01
Chr04	irgsp1_rep	CDS	22400577	22400772	.	-	1	Parent=Os04t0449500-01
Chr04	irgsp1_rep	CDS	22400291	22400424	.	-	0	Parent=Os04t0449500-01
Chr04	irgsp1_rep	CDS	22399707	22399995	.	-	1	Parent=Os04t0449500-01
Chr04	irgsp1_rep	CDS	22399483	22399589	.	-	0	Parent=Os04t0449500-01
Chr04	irgsp1_rep	CDS	22399229	22399403	.	-	1	Parent=Os04t0449500-01
Chr04	irgsp1_rep	CDS	22397682	22398127	.	-	0	Parent=Os04t0449500-01
Chr04	irgsp1_rep	CDS	22396839	22397007	.	-	1	Parent=Os04t0449500-01
Chr04	irgsp1_rep	three_prime_UTR	22396531	22396838	.	-	.	Parent=Os04t0449500-01
Chr04	irgsp1_rep	mRNA	22396840	22401579	.	+	.	ID=Os04t0449700-00;Name=Os04t0449700-00;Locus_id=Os04g0449700;Note=Hypothetical protein.;Transcript_evidence=tplb0030h18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0449700-00
Chr04	irgsp1_rep	five_prime_UTR	22396840	22397005	.	+	.	Parent=Os04t0449700-00
Chr04	irgsp1_rep	five_prime_UTR	22397680	22398062	.	+	.	Parent=Os04t0449700-00
Chr04	irgsp1_rep	CDS	22398063	22398127	.	+	0	Parent=Os04t0449700-00
Chr04	irgsp1_rep	CDS	22399229	22399393	.	+	1	Parent=Os04t0449700-00
Chr04	irgsp1_rep	CDS	22399472	22399588	.	+	1	Parent=Os04t0449700-00
Chr04	irgsp1_rep	CDS	22399706	22399763	.	+	1	Parent=Os04t0449700-00
Chr04	irgsp1_rep	three_prime_UTR	22399764	22399993	.	+	.	Parent=Os04t0449700-00
Chr04	irgsp1_rep	three_prime_UTR	22400289	22400416	.	+	.	Parent=Os04t0449700-00
Chr04	irgsp1_rep	three_prime_UTR	22400562	22400771	.	+	.	Parent=Os04t0449700-00
Chr04	irgsp1_rep	three_prime_UTR	22400959	22401068	.	+	.	Parent=Os04t0449700-00
Chr04	irgsp1_rep	three_prime_UTR	22401188	22401579	.	+	.	Parent=Os04t0449700-00
Chr04	irgsp1_rep	mRNA	22414499	22419109	.	+	.	ID=Os04t0449900-01;Name=Os04t0449900-01;Locus_id=Os04g0449900;Note=Similar to RNA Binding Protein 47.;Transcript_evidence=AK069926 (DDBJ%2C Best hit);ORF_evidence=Q01JG9 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023036B01;TENOR=Os04t0449900-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22414499	22414694	.	+	.	Parent=Os04t0449900-01
Chr04	irgsp1_rep	CDS	22414695	22414964	.	+	0	Parent=Os04t0449900-01
Chr04	irgsp1_rep	CDS	22415879	22416332	.	+	0	Parent=Os04t0449900-01
Chr04	irgsp1_rep	CDS	22416969	22417024	.	+	2	Parent=Os04t0449900-01
Chr04	irgsp1_rep	CDS	22417108	22417238	.	+	0	Parent=Os04t0449900-01
Chr04	irgsp1_rep	CDS	22417327	22417423	.	+	1	Parent=Os04t0449900-01
Chr04	irgsp1_rep	CDS	22418680	22418835	.	+	0	Parent=Os04t0449900-01
Chr04	irgsp1_rep	three_prime_UTR	22418836	22419109	.	+	.	Parent=Os04t0449900-01
Chr04	irgsp1_rep	mRNA	22418854	22419092	.	+	.	ID=Os04t0449900-02;Name=Os04t0449900-02;Locus_id=Os04g0449900;Note=Non-protein coding transcript.;Transcript_evidence=AK122097 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J033125F07;TENOR=Os04t0449900-02
Chr04	irgsp1_rep	exon	22418854	22419092	.	+	.	Parent=Os04t0449900-02
Chr04	irgsp1_rep	mRNA	22415897	22417223	.	-	.	ID=Os04t0449950-00;Name=Os04t0449950-00;Locus_id=Os04g0449950;Note=Non-protein coding transcript.;Transcript_evidence=BT009377 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0449950-00
Chr04	irgsp1_rep	exon	22417050	22417223	.	-	.	Parent=Os04t0449950-00
Chr04	irgsp1_rep	exon	22415897	22416338	.	-	.	Parent=Os04t0449950-00
Chr04	irgsp1_rep	mRNA	22425447	22426564	.	+	.	ID=Os04t0450000-01;Name=Os04t0450000-01;Locus_id=Os04g0450000;Note=Zinc finger%2C FYVE/PHD-type domain containing protein.;Transcript_evidence=AK108406 (DDBJ%2C Best hit);ORF_evidence=Q01JG8 (UniProt);NIAS_FLcDNA=002-142-G09;Expression=AK108406;TENOR=Os04t0450000-01;KEGG=Os04t0450000-01
Chr04	irgsp1_rep	five_prime_UTR	22425447	22425628	.	+	.	Parent=Os04t0450000-01
Chr04	irgsp1_rep	CDS	22425629	22425771	.	+	0	Parent=Os04t0450000-01
Chr04	irgsp1_rep	CDS	22425896	22426388	.	+	1	Parent=Os04t0450000-01
Chr04	irgsp1_rep	three_prime_UTR	22426389	22426564	.	+	.	Parent=Os04t0450000-01
Chr04	irgsp1_rep	mRNA	22428835	22431545	.	+	.	ID=Os04t0450100-01;Name=Os04t0450100-01;Locus_id=Os04g0450100;Oryzabase Gene Name Synonym(s)=dihydrofolate reductase;Note=Protein of unknown function DUF341 domain containing protein.;Transcript_evidence=AK069194 (DDBJ%2C Best hit);ORF_evidence=Q01JG7 (UniProt);InterPro=Serine hydrolase FSH (IPR005645);NIAS_FLcDNA=J023007H02;Oryzabase=16019;Expression=AK069194;TENOR=Os04t0450100-01;KEGG=Os04t0450100-01
Chr04	irgsp1_rep	five_prime_UTR	22428835	22428958	.	+	.	Parent=Os04t0450100-01
Chr04	irgsp1_rep	CDS	22428959	22429216	.	+	0	Parent=Os04t0450100-01
Chr04	irgsp1_rep	CDS	22429328	22429426	.	+	0	Parent=Os04t0450100-01
Chr04	irgsp1_rep	CDS	22429523	22429564	.	+	0	Parent=Os04t0450100-01
Chr04	irgsp1_rep	CDS	22429701	22429830	.	+	0	Parent=Os04t0450100-01
Chr04	irgsp1_rep	CDS	22430469	22430570	.	+	2	Parent=Os04t0450100-01
Chr04	irgsp1_rep	CDS	22431311	22431417	.	+	2	Parent=Os04t0450100-01
Chr04	irgsp1_rep	three_prime_UTR	22431418	22431545	.	+	.	Parent=Os04t0450100-01
Chr04	irgsp1_rep	mRNA	22428961	22431568	.	+	.	ID=Os04t0450100-02;Name=Os04t0450100-02;Locus_id=Os04g0450100;Oryzabase Gene Name Synonym(s)=dihydrofolate reductase;Note=Similar to H0818E04.16 protein.;Transcript_evidence=AK100647 (DDBJ%2C Best hit);ORF_evidence=Q01JG7 (UniProt);InterPro=Serine hydrolase FSH (IPR005645);NIAS_FLcDNA=J023110L18;Oryzabase=16019;Expression=AK100647;TENOR=Os04t0450100-02;KEGG=Os04t0450100-02
Chr04	irgsp1_rep	five_prime_UTR	22428961	22428961	.	+	.	Parent=Os04t0450100-02
Chr04	irgsp1_rep	CDS	22428962	22429216	.	+	0	Parent=Os04t0450100-02
Chr04	irgsp1_rep	CDS	22429328	22429426	.	+	0	Parent=Os04t0450100-02
Chr04	irgsp1_rep	CDS	22429523	22429564	.	+	0	Parent=Os04t0450100-02
Chr04	irgsp1_rep	CDS	22429701	22429830	.	+	0	Parent=Os04t0450100-02
Chr04	irgsp1_rep	CDS	22430469	22430570	.	+	2	Parent=Os04t0450100-02
Chr04	irgsp1_rep	CDS	22431311	22431417	.	+	2	Parent=Os04t0450100-02
Chr04	irgsp1_rep	three_prime_UTR	22431418	22431568	.	+	.	Parent=Os04t0450100-02
Chr04	irgsp1_rep	mRNA	22432163	22432622	.	-	.	ID=Os04t0450150-00;Name=Os04t0450150-00;Locus_id=Os04g0450150;Note=Hypothetical gene.;Transcript_evidence=EU948502 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0450150-00;KEGG=Os04t0450150-00
Chr04	irgsp1_rep	five_prime_UTR	22432564	22432622	.	-	.	Parent=Os04t0450150-00
Chr04	irgsp1_rep	CDS	22432397	22432563	.	-	0	Parent=Os04t0450150-00
Chr04	irgsp1_rep	CDS	22432173	22432317	.	-	1	Parent=Os04t0450150-00
Chr04	irgsp1_rep	three_prime_UTR	22432163	22432172	.	-	.	Parent=Os04t0450150-00
Chr04	irgsp1_rep	mRNA	22433781	22434743	.	+	.	ID=Os04t0450200-01;Name=Os04t0450200-01;Locus_id=Os04g0450200;Note=Pentatricopeptide repeat containing protein.;Transcript_evidence=AK061063 (DDBJ%2C Best hit);ORF_evidence=Q01JG6 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=006-206-B04;Expression=AK061063;TENOR=Os04t0450200-01;KEGG=Os04t0450200-01
Chr04	irgsp1_rep	five_prime_UTR	22433781	22433782	.	+	.	Parent=Os04t0450200-01
Chr04	irgsp1_rep	CDS	22433783	22434661	.	+	0	Parent=Os04t0450200-01
Chr04	irgsp1_rep	three_prime_UTR	22434662	22434743	.	+	.	Parent=Os04t0450200-01
Chr04	irgsp1_rep	mRNA	22435568	22436126	.	-	.	ID=Os04t0450250-00;Name=Os04t0450250-00;Locus_id=Os04g0450250;Note=Hypothetical protein.;Transcript_evidence=EU943053 (DDBJ);ORF_evidence=GeneMark;TENOR=Os04t0450250-00
Chr04	irgsp1_rep	five_prime_UTR	22436000	22436126	.	-	.	Parent=Os04t0450250-00
Chr04	irgsp1_rep	CDS	22435568	22435999	.	-	0	Parent=Os04t0450250-00
Chr04	irgsp1_rep	mRNA	22435662	22436681	.	+	.	ID=Os04t0450300-00;Name=Os04t0450300-00;Locus_id=Os04g0450300;Note=Similar to H0818E04.18 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01JI8 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os04t0450300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	22435662	22436681	.	+	0	Parent=Os04t0450300-00
Chr04	irgsp1_rep	mRNA	22442143	22443686	.	-	.	ID=Os04t0450400-01;Name=Os04t0450400-01;Locus_id=Os04g0450400;Oryzabase Gene Name Synonym(s)=rice homolog of AtRING1A/1B.;Note=Similar to H0818E04.19 protein.;Transcript_evidence=AK121979 (DDBJ%2C Best hit);ORF_evidence=Q01JI7 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J033108K14;Oryzabase=22610;TENOR=Os04t0450400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22443686	22443686	.	-	.	Parent=Os04t0450400-01
Chr04	irgsp1_rep	CDS	22442300	22443685	.	-	0	Parent=Os04t0450400-01
Chr04	irgsp1_rep	three_prime_UTR	22442143	22442299	.	-	.	Parent=Os04t0450400-01
Chr04	irgsp1_rep	mRNA	22445324	22447425	.	+	.	ID=Os04t0450500-01;Name=Os04t0450500-01;Locus_id=Os04g0450500;Note=Similar to H0818E04.20 protein.;Transcript_evidence=AK058975 (DDBJ%2C Best hit);ORF_evidence=Q01JI6 (UniProt);NIAS_FLcDNA=001-020-D05;Expression=AK058975;TENOR=Os04t0450500-01;KEGG=Os04t0450500-01
Chr04	irgsp1_rep	five_prime_UTR	22445324	22445368	.	+	.	Parent=Os04t0450500-01
Chr04	irgsp1_rep	CDS	22445369	22445410	.	+	0	Parent=Os04t0450500-01
Chr04	irgsp1_rep	CDS	22445779	22446041	.	+	0	Parent=Os04t0450500-01
Chr04	irgsp1_rep	CDS	22446144	22446234	.	+	1	Parent=Os04t0450500-01
Chr04	irgsp1_rep	CDS	22446317	22446676	.	+	0	Parent=Os04t0450500-01
Chr04	irgsp1_rep	three_prime_UTR	22446677	22447425	.	+	.	Parent=Os04t0450500-01
Chr04	irgsp1_rep	mRNA	22448084	22450533	.	+	.	ID=Os04t0450600-00;Name=Os04t0450600-00;Locus_id=Os04g0450600;Note=Similar to H0818E04.21 protein.;Transcript_evidence=CT835041 (DDBJ%2C Best hit);ORF_evidence=Q01JI5 (UniProt);TENOR=Os04t0450600-00;KEGG=Os04t0450600-00
Chr04	irgsp1_rep	five_prime_UTR	22448084	22448172	.	+	.	Parent=Os04t0450600-00
Chr04	irgsp1_rep	CDS	22448173	22448354	.	+	0	Parent=Os04t0450600-00
Chr04	irgsp1_rep	CDS	22448509	22448580	.	+	1	Parent=Os04t0450600-00
Chr04	irgsp1_rep	CDS	22448685	22448752	.	+	1	Parent=Os04t0450600-00
Chr04	irgsp1_rep	CDS	22448855	22449048	.	+	2	Parent=Os04t0450600-00
Chr04	irgsp1_rep	CDS	22450183	22450257	.	+	0	Parent=Os04t0450600-00
Chr04	irgsp1_rep	three_prime_UTR	22450258	22450533	.	+	.	Parent=Os04t0450600-00
Chr04	irgsp1_rep	mRNA	22452038	22452591	.	-	.	ID=Os04t0450701-00;Name=Os04t0450701-00;Locus_id=Os04g0450701;CGSNL Gene Symbol=AGP4;CGSNL Gene Name=ARABINOGALACTAN PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OsAGP4;Oryzabase Gene Name Synonym(s)=Arabinogalactan protein 4;Note=Hypothetical protein.;Transcript_evidence=EU969685 (DDBJ);ORF_evidence=GeneMark;Oryzabase=11297;TENOR=Os04t0450701-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22452591	22452591	.	-	.	Parent=Os04t0450701-00
Chr04	irgsp1_rep	CDS	22452210	22452590	.	-	0	Parent=Os04t0450701-00
Chr04	irgsp1_rep	three_prime_UTR	22452038	22452209	.	-	.	Parent=Os04t0450701-00
Chr04	irgsp1_rep	mRNA	22461303	22464042	.	+	.	ID=Os04t0450800-01;Name=Os04t0450800-01;Locus_id=Os04g0450800;Oryzabase Gene Symbol Synonym(s)=RH3.2A;Oryzabase Gene Name Synonym(s)=Histone H3.2A%2C H3.2-type H3 protein A;Note=Similar to Histone H3.;Transcript_evidence=AK120807 (DDBJ%2C Best hit);ORF_evidence=D6PYM8 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H3 (IPR000164),Histone-fold (IPR009072);NIAS_FLcDNA=J023013P21;Oryzabase=15760;TENOR=Os04t0450800-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22461303	22461390	.	+	.	Parent=Os04t0450800-01
Chr04	irgsp1_rep	five_prime_UTR	22462980	22463001	.	+	.	Parent=Os04t0450800-01
Chr04	irgsp1_rep	CDS	22463002	22463073	.	+	0	Parent=Os04t0450800-01
Chr04	irgsp1_rep	CDS	22463215	22463291	.	+	0	Parent=Os04t0450800-01
Chr04	irgsp1_rep	CDS	22463382	22463473	.	+	1	Parent=Os04t0450800-01
Chr04	irgsp1_rep	CDS	22463569	22463573	.	+	2	Parent=Os04t0450800-01
Chr04	irgsp1_rep	three_prime_UTR	22463574	22464042	.	+	.	Parent=Os04t0450800-01
Chr04	irgsp1_rep	mRNA	22461377	22464042	.	+	.	ID=Os04t0450800-02;Name=Os04t0450800-02;Locus_id=Os04g0450800;Oryzabase Gene Symbol Synonym(s)=RH3.2A;Oryzabase Gene Name Synonym(s)=Histone H3.2A%2C H3.2-type H3 protein A;Note=Similar to Histone H3.;Transcript_evidence=AK100960 (DDBJ%2C Best hit);ORF_evidence=D6PYM8 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H3 (IPR000164),Histone-fold (IPR009072);NIAS_FLcDNA=J023141A14;Oryzabase=15760;TENOR=Os04t0450800-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22461377	22463001	.	+	.	Parent=Os04t0450800-02
Chr04	irgsp1_rep	CDS	22463002	22463073	.	+	0	Parent=Os04t0450800-02
Chr04	irgsp1_rep	CDS	22463215	22463291	.	+	0	Parent=Os04t0450800-02
Chr04	irgsp1_rep	CDS	22463382	22463473	.	+	1	Parent=Os04t0450800-02
Chr04	irgsp1_rep	CDS	22463569	22463573	.	+	2	Parent=Os04t0450800-02
Chr04	irgsp1_rep	three_prime_UTR	22463574	22464042	.	+	.	Parent=Os04t0450800-02
Chr04	irgsp1_rep	mRNA	22463001	22463756	.	-	.	ID=Os04t0450825-00;Name=Os04t0450825-00;Locus_id=Os04g0450825;Note=Hypothetical protein.;Transcript_evidence=BT018950 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0450825-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22463671	22463756	.	-	.	Parent=Os04t0450825-00
Chr04	irgsp1_rep	CDS	22463567	22463670	.	-	0	Parent=Os04t0450825-00
Chr04	irgsp1_rep	CDS	22463377	22463470	.	-	1	Parent=Os04t0450825-00
Chr04	irgsp1_rep	CDS	22463196	22463286	.	-	0	Parent=Os04t0450825-00
Chr04	irgsp1_rep	CDS	22463012	22463061	.	-	2	Parent=Os04t0450825-00
Chr04	irgsp1_rep	three_prime_UTR	22463001	22463011	.	-	.	Parent=Os04t0450825-00
Chr04	irgsp1_rep	mRNA	22465257	22466788	.	+	.	ID=Os04t0450850-01;Name=Os04t0450850-01;Locus_id=Os04g0450850;Note=Hypothetical gene.;Transcript_evidence=AK242563 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090004H20;TENOR=Os04t0450850-01;KEGG=Os04t0450850-01
Chr04	irgsp1_rep	five_prime_UTR	22465257	22466134	.	+	.	Parent=Os04t0450850-01
Chr04	irgsp1_rep	CDS	22466135	22466359	.	+	0	Parent=Os04t0450850-01
Chr04	irgsp1_rep	three_prime_UTR	22466360	22466788	.	+	.	Parent=Os04t0450850-01
Chr04	irgsp1_rep	mRNA	22466803	22469010	.	-	.	ID=Os04t0450900-01;Name=Os04t0450900-01;Locus_id=Os04g0450900;Note=Protein kinase PKN/PRK1%2C effector domain containing protein.;Transcript_evidence=AK067842 (DDBJ%2C Best hit);ORF_evidence=Q01J94 (UniProt);NIAS_FLcDNA=J013123C22;Expression=AK067842;TENOR=Os04t0450900-01;KEGG=Os04t0450900-01
Chr04	irgsp1_rep	five_prime_UTR	22468785	22469010	.	-	.	Parent=Os04t0450900-01
Chr04	irgsp1_rep	five_prime_UTR	22468437	22468581	.	-	.	Parent=Os04t0450900-01
Chr04	irgsp1_rep	five_prime_UTR	22468309	22468326	.	-	.	Parent=Os04t0450900-01
Chr04	irgsp1_rep	CDS	22466896	22468308	.	-	0	Parent=Os04t0450900-01
Chr04	irgsp1_rep	three_prime_UTR	22466803	22466895	.	-	.	Parent=Os04t0450900-01
Chr04	irgsp1_rep	mRNA	22466836	22469717	.	+	.	ID=Os04t0451000-01;Name=Os04t0451000-01;Locus_id=Os04g0451000;Note=Hypothetical protein.;Transcript_evidence=AK110238 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-162-G01;Expression=AK110238;TENOR=Os04t0451000-01;KEGG=Os04t0451000-01
Chr04	irgsp1_rep	five_prime_UTR	22466836	22467442	.	+	.	Parent=Os04t0451000-01
Chr04	irgsp1_rep	CDS	22467443	22468405	.	+	0	Parent=Os04t0451000-01
Chr04	irgsp1_rep	three_prime_UTR	22468406	22469717	.	+	.	Parent=Os04t0451000-01
Chr04	irgsp1_rep	mRNA	22466929	22468369	.	+	.	ID=Os04t0451000-02;Name=Os04t0451000-02;Locus_id=Os04g0451000;Note=Hypothetical gene.;Transcript_evidence=AK107687 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-132-B05;Expression=AK107687;TENOR=Os04t0451000-02;KEGG=Os04t0451000-02
Chr04	irgsp1_rep	CDS	22466929	22468182	.	+	0	Parent=Os04t0451000-02
Chr04	irgsp1_rep	three_prime_UTR	22468183	22468369	.	+	.	Parent=Os04t0451000-02
Chr04	irgsp1_rep	mRNA	22472184	22479333	.	+	.	ID=Os04t0451100-01;Name=Os04t0451100-01;Locus_id=Os04g0451100;Note=Similar to H0815C01.3 protein.;Transcript_evidence=AK106764 (DDBJ%2C Best hit);ORF_evidence=Q01J93 (UniProt);NIAS_FLcDNA=002-115-E09;Expression=AK106764;TENOR=Os04t0451100-01;KEGG=Os04t0451100-01
Chr04	irgsp1_rep	five_prime_UTR	22472184	22472248	.	+	.	Parent=Os04t0451100-01
Chr04	irgsp1_rep	CDS	22472249	22472392	.	+	0	Parent=Os04t0451100-01
Chr04	irgsp1_rep	CDS	22474614	22474679	.	+	0	Parent=Os04t0451100-01
Chr04	irgsp1_rep	CDS	22474770	22474857	.	+	0	Parent=Os04t0451100-01
Chr04	irgsp1_rep	CDS	22474929	22475082	.	+	2	Parent=Os04t0451100-01
Chr04	irgsp1_rep	CDS	22475409	22475505	.	+	1	Parent=Os04t0451100-01
Chr04	irgsp1_rep	CDS	22475590	22475649	.	+	0	Parent=Os04t0451100-01
Chr04	irgsp1_rep	CDS	22475765	22475865	.	+	0	Parent=Os04t0451100-01
Chr04	irgsp1_rep	CDS	22475952	22476033	.	+	1	Parent=Os04t0451100-01
Chr04	irgsp1_rep	CDS	22476337	22476429	.	+	0	Parent=Os04t0451100-01
Chr04	irgsp1_rep	CDS	22476503	22476567	.	+	0	Parent=Os04t0451100-01
Chr04	irgsp1_rep	CDS	22476980	22476992	.	+	1	Parent=Os04t0451100-01
Chr04	irgsp1_rep	CDS	22477080	22477160	.	+	0	Parent=Os04t0451100-01
Chr04	irgsp1_rep	CDS	22477547	22477655	.	+	0	Parent=Os04t0451100-01
Chr04	irgsp1_rep	CDS	22477770	22477891	.	+	2	Parent=Os04t0451100-01
Chr04	irgsp1_rep	three_prime_UTR	22477892	22477941	.	+	.	Parent=Os04t0451100-01
Chr04	irgsp1_rep	three_prime_UTR	22479117	22479333	.	+	.	Parent=Os04t0451100-01
Chr04	irgsp1_rep	mRNA	22481487	22483201	.	+	.	ID=Os04t0451200-01;Name=Os04t0451200-01;Locus_id=Os04g0451200;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK061024 (DDBJ%2C Best hit);ORF_evidence=Q01J92 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=006-204-F02;Expression=AK061024;TENOR=Os04t0451200-01;KEGG=Os04t0451200-01
Chr04	irgsp1_rep	five_prime_UTR	22481487	22481571	.	+	.	Parent=Os04t0451200-01
Chr04	irgsp1_rep	CDS	22481572	22482091	.	+	0	Parent=Os04t0451200-01
Chr04	irgsp1_rep	CDS	22482160	22483115	.	+	2	Parent=Os04t0451200-01
Chr04	irgsp1_rep	three_prime_UTR	22483116	22483201	.	+	.	Parent=Os04t0451200-01
Chr04	irgsp1_rep	mRNA	22481491	22483248	.	+	.	ID=Os04t0451200-02;Name=Os04t0451200-02;Locus_id=Os04g0451200;Note=Similar to H0815C01.4 protein.;Transcript_evidence=AK068176 (DDBJ%2C Best hit);ORF_evidence=Q01J92 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J013132G13;TENOR=Os04t0451200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22481491	22482149	.	+	.	Parent=Os04t0451200-02
Chr04	irgsp1_rep	CDS	22482150	22483115	.	+	0	Parent=Os04t0451200-02
Chr04	irgsp1_rep	three_prime_UTR	22483116	22483248	.	+	.	Parent=Os04t0451200-02
Chr04	irgsp1_rep	mRNA	22530926	22531513	.	+	.	ID=Os04t0451700-01;Name=Os04t0451700-01;Locus_id=Os04g0451700;Note=Conserved hypothetical protein.;Transcript_evidence=AK068961 (DDBJ%2C Best hit);ORF_evidence=A2XU30 (UniProt);NIAS_FLcDNA=J023002B05;Expression=AK068961;TENOR=Os04t0451700-01;KEGG=Os04t0451700-01
Chr04	irgsp1_rep	five_prime_UTR	22530926	22531021	.	+	.	Parent=Os04t0451700-01
Chr04	irgsp1_rep	CDS	22531022	22531291	.	+	0	Parent=Os04t0451700-01
Chr04	irgsp1_rep	three_prime_UTR	22531292	22531513	.	+	.	Parent=Os04t0451700-01
Chr04	irgsp1_rep	mRNA	22534358	22540942	.	-	.	ID=Os04t0452000-01;Name=Os04t0452000-01;Locus_id=Os04g0452000;Oryzabase Gene Symbol Synonym(s)=OsPP2C41%2C PP2C41%2C OsPP66;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C41%2C protein phosphatase 2C 41%2C protein phosphatase 66;Note=Similar to H0815C01.7 protein.;Transcript_evidence=AK243041 (DDBJ%2C Best hit);ORF_evidence=Q01J89 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J100008G07;Oryzabase=17915;TENOR=Os04t0452000-01;KEGG=Os04t0452000-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22540848	22540942	.	-	.	Parent=Os04t0452000-01
Chr04	irgsp1_rep	five_prime_UTR	22540505	22540695	.	-	.	Parent=Os04t0452000-01
Chr04	irgsp1_rep	CDS	22540466	22540504	.	-	0	Parent=Os04t0452000-01
Chr04	irgsp1_rep	CDS	22539764	22540006	.	-	0	Parent=Os04t0452000-01
Chr04	irgsp1_rep	CDS	22539399	22539675	.	-	0	Parent=Os04t0452000-01
Chr04	irgsp1_rep	CDS	22535147	22535301	.	-	2	Parent=Os04t0452000-01
Chr04	irgsp1_rep	CDS	22534894	22535034	.	-	0	Parent=Os04t0452000-01
Chr04	irgsp1_rep	three_prime_UTR	22534358	22534893	.	-	.	Parent=Os04t0452000-01
Chr04	irgsp1_rep	mRNA	22550007	22555038	.	+	.	ID=Os04t0452100-01;Name=Os04t0452100-01;Locus_id=Os04g0452100;RAP-DB Gene Symbol Synonym(s)=OsCRY2;RAP-DB Gene Name Synonym(s)=Blue-light-receptor cryptoChrome 2;Oryzabase Gene Symbol Synonym(s)=OsCRY1b%2C OsCRY2%2C CRY1b%2C CRY1;Oryzabase Gene Name Synonym(s)=cryptoChrome 1b%2C Blue-light-receptor cryptoChrome 2;Note=CryptoChrome 1%2C blue light photoreceptor;Transcript_evidence=AB098568,AK072182;ORF_evidence=Q7XXN9;GO=Biological Process: blue light signaling pathway (GO:0009785),Molecular Function: blue light photoreceptor activity (GO:0009882);InterPro=CryptoChrome/DNA photolyase class 1 (IPR002081),CryptoChrome%2C plant (IPR014134),DNA photolyase%2C N-terminal (IPR006050),CryptoChrome/DNA photolyase%2C FAD-binding domain (IPR005101),CryptoChrome C-terminal (IPR020978),CryptoChrome/DNA photolyase class 1%2C conserved site%2C C-terminal (IPR018394);NIAS_FLcDNA=J013146D14;Manual Curation=September 13%2C 2016;Literature_PMID=14657402;Oryzabase=11126;Expression=AK072182;TENOR=Os04t0452100-01;KEGG=Os04t0452100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22550007	22551720	.	+	.	Parent=Os04t0452100-01
Chr04	irgsp1_rep	CDS	22551721	22551901	.	+	0	Parent=Os04t0452100-01
Chr04	irgsp1_rep	CDS	22552175	22552881	.	+	2	Parent=Os04t0452100-01
Chr04	irgsp1_rep	CDS	22553013	22553831	.	+	0	Parent=Os04t0452100-01
Chr04	irgsp1_rep	three_prime_UTR	22553832	22555038	.	+	.	Parent=Os04t0452100-01
Chr04	irgsp1_rep	mRNA	22549901	22555033	.	+	.	ID=Os04t0452100-02;Name=Os04t0452100-02;Locus_id=Os04g0452100;RAP-DB Gene Symbol Synonym(s)=OsCRY1b%2C CRY1b%2C CRY1;RAP-DB Gene Name Synonym(s)=cryptoChrome 1b;Oryzabase Gene Symbol Synonym(s)=OsCRY1b%2C OsCRY2%2C CRY1b%2C CRY1;Oryzabase Gene Name Synonym(s)=cryptoChrome 1b%2C Blue-light-receptor cryptoChrome 2;Note=CryptoChrome 1b%2C blue light photoreceptor%2C Regulation of blue light-mediated de-etiolation%2C Blue light-dependent inhibition of coleoptile and leaf elongation;Transcript_evidence=AB073547;ORF_evidence=Q948J4;GO=Biological Process: blue light signaling pathway (GO:0009785),Molecular Function: blue light photoreceptor activity (GO:0009882);InterPro=CryptoChrome/DNA photolyase class 1 (IPR002081),CryptoChrome%2C plant (IPR014134),DNA photolyase%2C N-terminal (IPR006050),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),CryptoChrome/DNA photolyase%2C FAD-binding domain (IPR005101),CryptoChrome C-terminal (IPR020978),CryptoChrome/DNA photolyase class 1%2C conserved site%2C C-terminal (IPR018394);Manual Curation=September 12%2C 2016;Literature_PMID=16760221;Oryzabase=11126
Chr04	irgsp1_rep	five_prime_UTR	22549901	22550301	.	+	.	Parent=Os04t0452100-02
Chr04	irgsp1_rep	CDS	22550302	22550659	.	+	0	Parent=Os04t0452100-02
Chr04	irgsp1_rep	CDS	22551683	22551901	.	+	2	Parent=Os04t0452100-02
Chr04	irgsp1_rep	CDS	22552175	22552881	.	+	2	Parent=Os04t0452100-02
Chr04	irgsp1_rep	CDS	22553013	22553831	.	+	0	Parent=Os04t0452100-02
Chr04	irgsp1_rep	three_prime_UTR	22553832	22553861	.	+	.	Parent=Os04t0452100-02
Chr04	irgsp1_rep	three_prime_UTR	22554684	22555033	.	+	.	Parent=Os04t0452100-02
Chr04	irgsp1_rep	mRNA	22562756	22566945	.	-	.	ID=Os04t0452300-00;Name=Os04t0452300-00;Locus_id=Os04g0452300;Note=Similar to OSIGBa0093K19.10 protein.;Transcript_evidence=AK365669 (DDBJ);ORF_evidence=Q01K98 (UniProt);TENOR=Os04t0452300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22566761	22566945	.	-	.	Parent=Os04t0452300-00
Chr04	irgsp1_rep	five_prime_UTR	22566299	22566432	.	-	.	Parent=Os04t0452300-00
Chr04	irgsp1_rep	five_prime_UTR	22565859	22565906	.	-	.	Parent=Os04t0452300-00
Chr04	irgsp1_rep	CDS	22565759	22565858	.	-	0	Parent=Os04t0452300-00
Chr04	irgsp1_rep	CDS	22564492	22564730	.	-	2	Parent=Os04t0452300-00
Chr04	irgsp1_rep	CDS	22562908	22563300	.	-	0	Parent=Os04t0452300-00
Chr04	irgsp1_rep	three_prime_UTR	22562756	22562907	.	-	.	Parent=Os04t0452300-00
Chr04	irgsp1_rep	mRNA	22562930	22564740	.	+	.	ID=Os04t0452350-00;Name=Os04t0452350-00;Locus_id=Os04g0452350;Note=Non-protein coding transcript.;Transcript_evidence=tplb0058h13 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os04t0452350-00
Chr04	irgsp1_rep	exon	22562930	22563889	.	+	.	Parent=Os04t0452350-00
Chr04	irgsp1_rep	exon	22564184	22564740	.	+	.	Parent=Os04t0452350-00
Chr04	irgsp1_rep	mRNA	22567565	22573571	.	-	.	ID=Os04t0452400-01;Name=Os04t0452400-01;Locus_id=Os04g0452400;CGSNL Gene Symbol=UBP2-3;CGSNL Gene Name=UBIQUITIN-SPECIFIC PROCESSING PROTEASE 2-3;Oryzabase Gene Symbol Synonym(s)=OsUBP2-3%2C OsUBP3%2C UBP3;Oryzabase Gene Name Synonym(s)=ubiquitin-specific processing protease 2-3%2C Ubiquitin-specific protease 3;Note=Similar to Ubiquitin carboxyl-terminal hydrolase 4 (EC 3.1.2.15) (Ubiquitin- specific processing protease 4) (AtUBP4).;Transcript_evidence=AK068069 (DDBJ%2C Best hit);ORF_evidence=Q01J87 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Molecular Function: ubiquitin thiolesterase activity (GO:0004221);InterPro=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (IPR001394),Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2%2C conserved site (IPR018200);NIAS_FLcDNA=J013134H10;Oryzabase=22874;Expression=AK068069;TENOR=Os04t0452400-01;KEGG=Os04t0452400-01 (EC:3.1.2.15);B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22573213	22573571	.	-	.	Parent=Os04t0452400-01
Chr04	irgsp1_rep	CDS	22573090	22573212	.	-	0	Parent=Os04t0452400-01
Chr04	irgsp1_rep	CDS	22571549	22571665	.	-	0	Parent=Os04t0452400-01
Chr04	irgsp1_rep	CDS	22569310	22569408	.	-	0	Parent=Os04t0452400-01
Chr04	irgsp1_rep	CDS	22568803	22568988	.	-	0	Parent=Os04t0452400-01
Chr04	irgsp1_rep	CDS	22568532	22568713	.	-	0	Parent=Os04t0452400-01
Chr04	irgsp1_rep	CDS	22567836	22568232	.	-	1	Parent=Os04t0452400-01
Chr04	irgsp1_rep	three_prime_UTR	22567565	22567835	.	-	.	Parent=Os04t0452400-01
Chr04	irgsp1_rep	mRNA	22582841	22592982	.	+	.	ID=Os04t0452500-00;Name=Os04t0452500-00;Locus_id=Os04g0452500;CGSNL Gene Symbol=ZEP1;CGSNL Gene Name=TANSVERSE FILAMENT;Oryzabase Gene Symbol Synonym(s)=OsZEP1;Note=Similar to H0505F09.1 protein.;Transcript_evidence=GU479042 (DDBJ%2C Best hit);ORF_evidence=Q01JU0 (UniProt);Oryzabase=9115;TENOR=Os04t0452500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22582841	22583134	.	+	.	Parent=Os04t0452500-00
Chr04	irgsp1_rep	five_prime_UTR	22583237	22583334	.	+	.	Parent=Os04t0452500-00
Chr04	irgsp1_rep	five_prime_UTR	22583416	22583455	.	+	.	Parent=Os04t0452500-00
Chr04	irgsp1_rep	CDS	22583456	22583612	.	+	0	Parent=Os04t0452500-00
Chr04	irgsp1_rep	CDS	22583707	22583756	.	+	2	Parent=Os04t0452500-00
Chr04	irgsp1_rep	CDS	22585188	22585395	.	+	0	Parent=Os04t0452500-00
Chr04	irgsp1_rep	CDS	22585463	22585588	.	+	2	Parent=Os04t0452500-00
Chr04	irgsp1_rep	CDS	22585820	22585918	.	+	2	Parent=Os04t0452500-00
Chr04	irgsp1_rep	CDS	22586080	22586756	.	+	2	Parent=Os04t0452500-00
Chr04	irgsp1_rep	CDS	22586834	22587082	.	+	0	Parent=Os04t0452500-00
Chr04	irgsp1_rep	CDS	22587159	22587287	.	+	0	Parent=Os04t0452500-00
Chr04	irgsp1_rep	CDS	22587372	22587440	.	+	0	Parent=Os04t0452500-00
Chr04	irgsp1_rep	CDS	22587534	22587644	.	+	0	Parent=Os04t0452500-00
Chr04	irgsp1_rep	CDS	22588712	22588819	.	+	0	Parent=Os04t0452500-00
Chr04	irgsp1_rep	CDS	22588892	22589002	.	+	0	Parent=Os04t0452500-00
Chr04	irgsp1_rep	CDS	22589076	22589162	.	+	0	Parent=Os04t0452500-00
Chr04	irgsp1_rep	CDS	22590474	22590563	.	+	0	Parent=Os04t0452500-00
Chr04	irgsp1_rep	CDS	22590646	22590738	.	+	0	Parent=Os04t0452500-00
Chr04	irgsp1_rep	CDS	22590866	22590949	.	+	0	Parent=Os04t0452500-00
Chr04	irgsp1_rep	CDS	22591050	22591112	.	+	0	Parent=Os04t0452500-00
Chr04	irgsp1_rep	CDS	22591700	22591798	.	+	0	Parent=Os04t0452500-00
Chr04	irgsp1_rep	three_prime_UTR	22591799	22591801	.	+	.	Parent=Os04t0452500-00
Chr04	irgsp1_rep	three_prime_UTR	22592656	22592982	.	+	.	Parent=Os04t0452500-00
Chr04	irgsp1_rep	mRNA	22594108	22595839	.	+	.	ID=Os04t0452600-00;Name=Os04t0452600-00;Locus_id=Os04g0452600;Note=Similar to H0505F09.2 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01JT9 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);TENOR=Os04t0452600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	22594108	22594246	.	+	0	Parent=Os04t0452600-00
Chr04	irgsp1_rep	CDS	22594266	22595119	.	+	2	Parent=Os04t0452600-00
Chr04	irgsp1_rep	CDS	22595396	22595839	.	+	0	Parent=Os04t0452600-00
Chr04	irgsp1_rep	mRNA	22594347	22595639	.	-	.	ID=Os04t0452650-00;Name=Os04t0452650-00;Locus_id=Os04g0452650;Note=Hypothetical protein.;Transcript_evidence=BT061593 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0452650-00
Chr04	irgsp1_rep	five_prime_UTR	22595422	22595639	.	-	.	Parent=Os04t0452650-00
Chr04	irgsp1_rep	five_prime_UTR	22595336	22595342	.	-	.	Parent=Os04t0452650-00
Chr04	irgsp1_rep	CDS	22594347	22595335	.	-	0	Parent=Os04t0452650-00
Chr04	irgsp1_rep	mRNA	22598600	22601272	.	+	.	ID=Os04t0452700-01;Name=Os04t0452700-01;Locus_id=Os04g0452700;CGSNL Gene Symbol=MST1;CGSNL Gene Name=MONOSACCHARIDE TRANSPORTER 1;Oryzabase Gene Symbol Synonym(s)=OsMST1;Oryzabase Gene Name Synonym(s)=monosaccharide transporter 1;Note=Similar to Monosaccharide transporter 1.;Transcript_evidence=AK108820 (DDBJ%2C Best hit);ORF_evidence=Q01JT8 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=002-151-E11;Oryzabase=14506;Expression=AK108820;TENOR=Os04t0452700-01;KEGG=Os04t0452700-01
Chr04	irgsp1_rep	five_prime_UTR	22598600	22598763	.	+	.	Parent=Os04t0452700-01
Chr04	irgsp1_rep	CDS	22598764	22598905	.	+	0	Parent=Os04t0452700-01
Chr04	irgsp1_rep	CDS	22598988	22599310	.	+	2	Parent=Os04t0452700-01
Chr04	irgsp1_rep	CDS	22600032	22600664	.	+	0	Parent=Os04t0452700-01
Chr04	irgsp1_rep	CDS	22600734	22601189	.	+	0	Parent=Os04t0452700-01
Chr04	irgsp1_rep	three_prime_UTR	22601190	22601272	.	+	.	Parent=Os04t0452700-01
Chr04	irgsp1_rep	mRNA	22611924	22620016	.	+	.	ID=Os04t0453200-01;Name=Os04t0453200-01;Locus_id=Os04g0453200;Note=Similar to Monosaccharide transporter 1.;Transcript_evidence=AK121306 (DDBJ%2C Best hit);ORF_evidence=Q01JT7 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J023111J01;Expression=AK121306;TENOR=Os04t0453200-01;KEGG=Os04t0453200-01
Chr04	irgsp1_rep	five_prime_UTR	22611924	22612153	.	+	.	Parent=Os04t0453200-01
Chr04	irgsp1_rep	CDS	22612154	22612274	.	+	0	Parent=Os04t0453200-01
Chr04	irgsp1_rep	CDS	22617892	22618211	.	+	2	Parent=Os04t0453200-01
Chr04	irgsp1_rep	CDS	22618342	22618974	.	+	0	Parent=Os04t0453200-01
Chr04	irgsp1_rep	CDS	22619068	22619517	.	+	0	Parent=Os04t0453200-01
Chr04	irgsp1_rep	three_prime_UTR	22619518	22620016	.	+	.	Parent=Os04t0453200-01
Chr04	irgsp1_rep	mRNA	22619457	22619977	.	+	.	ID=Os04t0453200-02;Name=Os04t0453200-02;Locus_id=Os04g0453200;Note=Similar to H0505F09.4 protein.;Transcript_evidence=AK062721 (DDBJ%2C Best hit);ORF_evidence=Q01JT7 (UniProt);NIAS_FLcDNA=001-106-D04;Expression=AK062721;TENOR=Os04t0453200-02;KEGG=Os04t0453200-02
Chr04	irgsp1_rep	five_prime_UTR	22619457	22619457	.	+	.	Parent=Os04t0453200-02
Chr04	irgsp1_rep	CDS	22619458	22619517	.	+	0	Parent=Os04t0453200-02
Chr04	irgsp1_rep	three_prime_UTR	22619518	22619977	.	+	.	Parent=Os04t0453200-02
Chr04	irgsp1_rep	mRNA	22622399	22628124	.	-	.	ID=Os04t0453233-00;Name=Os04t0453233-00;Locus_id=Os04g0453233;Note=Hypothetical protein.;Transcript_evidence=tplb0053a05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0453233-00
Chr04	irgsp1_rep	five_prime_UTR	22627726	22628124	.	-	.	Parent=Os04t0453233-00
Chr04	irgsp1_rep	CDS	22627063	22627725	.	-	0	Parent=Os04t0453233-00
Chr04	irgsp1_rep	three_prime_UTR	22627061	22627062	.	-	.	Parent=Os04t0453233-00
Chr04	irgsp1_rep	three_prime_UTR	22626435	22626738	.	-	.	Parent=Os04t0453233-00
Chr04	irgsp1_rep	three_prime_UTR	22622399	22622549	.	-	.	Parent=Os04t0453233-00
Chr04	irgsp1_rep	mRNA	22626439	22627085	.	+	.	ID=Os04t0453266-00;Name=Os04t0453266-00;Locus_id=Os04g0453266;Note=Similar to H0505F09.5 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01JT6 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transmembrane transporter activity (GO:0022857);InterPro=General substrate transporter (IPR005828),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);TENOR=Os04t0453266-00
Chr04	irgsp1_rep	CDS	22626439	22626772	.	+	0	Parent=Os04t0453266-00
Chr04	irgsp1_rep	CDS	22627063	22627085	.	+	2	Parent=Os04t0453266-00
Chr04	irgsp1_rep	mRNA	22627633	22628157	.	+	.	ID=Os04t0453300-00;Name=Os04t0453300-00;Locus_id=Os04g0453300;Note=Similar to H0505F09.5 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01JT6 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);TENOR=Os04t0453300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	22627633	22628157	.	+	0	Parent=Os04t0453300-00
Chr04	irgsp1_rep	mRNA	22630013	22633280	.	-	.	ID=Os04t0453400-01;Name=Os04t0453400-01;Locus_id=Os04g0453400;Note=Similar to H0505F09.6 protein.;Transcript_evidence=AK099432 (DDBJ%2C Best hit),AK072688 (DDBJ%2C Best hit);ORF_evidence=Q01JT5 (UniProt);NIAS_FLcDNA=J013014D23,J023143N10;Expression=AK099432;TENOR=Os04t0453400-01;KEGG=Os04t0453400-01
Chr04	irgsp1_rep	five_prime_UTR	22633214	22633280	.	-	.	Parent=Os04t0453400-01
Chr04	irgsp1_rep	CDS	22632881	22633213	.	-	0	Parent=Os04t0453400-01
Chr04	irgsp1_rep	three_prime_UTR	22630013	22632880	.	-	.	Parent=Os04t0453400-01
Chr04	irgsp1_rep	mRNA	22628203	22633275	.	-	.	ID=Os04t0453400-02;Name=Os04t0453400-02;Locus_id=Os04g0453400;Note=Similar to Monosaccharide transporter 1.;Transcript_evidence=AK070018 (DDBJ%2C Best hit);ORF_evidence=Q01JT5 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J023038A15;Expression=AK070018;TENOR=Os04t0453400-02;KEGG=Os04t0453400-02
Chr04	irgsp1_rep	five_prime_UTR	22633214	22633275	.	-	.	Parent=Os04t0453400-02
Chr04	irgsp1_rep	CDS	22633063	22633213	.	-	0	Parent=Os04t0453400-02
Chr04	irgsp1_rep	CDS	22628910	22629862	.	-	2	Parent=Os04t0453400-02
Chr04	irgsp1_rep	CDS	22628387	22628821	.	-	0	Parent=Os04t0453400-02
Chr04	irgsp1_rep	three_prime_UTR	22628203	22628386	.	-	.	Parent=Os04t0453400-02
Chr04	irgsp1_rep	mRNA	22628584	22629867	.	+	.	ID=Os04t0453450-00;Name=Os04t0453450-00;Locus_id=Os04g0453450;Note=Hypothetical gene.;Transcript_evidence=BT061593 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0453450-00;KEGG=Os04t0453450-00
Chr04	irgsp1_rep	five_prime_UTR	22628584	22628584	.	+	.	Parent=Os04t0453450-00
Chr04	irgsp1_rep	CDS	22628585	22628782	.	+	0	Parent=Os04t0453450-00
Chr04	irgsp1_rep	CDS	22628883	22629842	.	+	0	Parent=Os04t0453450-00
Chr04	irgsp1_rep	three_prime_UTR	22629843	22629867	.	+	.	Parent=Os04t0453450-00
Chr04	irgsp1_rep	mRNA	22645052	22648129	.	-	.	ID=Os04t0453500-01;Name=Os04t0453500-01;Locus_id=Os04g0453500;Note=Conserved hypothetical protein.;Transcript_evidence=AK111799 (DDBJ%2C Best hit);ORF_evidence=NP_001175603.1 (RefSeq);NIAS_FLcDNA=J023109D12;TENOR=Os04t0453500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22646170	22648129	.	-	.	Parent=Os04t0453500-01
Chr04	irgsp1_rep	CDS	22645888	22646169	.	-	0	Parent=Os04t0453500-01
Chr04	irgsp1_rep	three_prime_UTR	22645052	22645887	.	-	.	Parent=Os04t0453500-01
Chr04	irgsp1_rep	mRNA	22650456	22651035	.	+	.	ID=Os04t0453700-00;Name=Os04t0453700-00;Locus_id=Os04g0453700;Note=Conserved hypothetical protein.;Transcript_evidence=EU952589 (DDBJ);ORF_evidence=Q7XUX9 (UniProt);TENOR=Os04t0453700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22650456	22650522	.	+	.	Parent=Os04t0453700-00
Chr04	irgsp1_rep	CDS	22650523	22651035	.	+	0	Parent=Os04t0453700-00
Chr04	irgsp1_rep	mRNA	22650547	22651335	.	-	.	ID=Os04t0453950-00;Name=Os04t0453950-00;Locus_id=Os04g0453950;Note=Similar to zinc finger%2C C3HC4 type family protein.;Transcript_evidence=BT061577 (DDBJ);ORF_evidence=NP_001152331.1 (RefSeq);TENOR=Os04t0453950-00
Chr04	irgsp1_rep	CDS	22650962	22651335	.	-	0	Parent=Os04t0453950-00
Chr04	irgsp1_rep	CDS	22650547	22650865	.	-	1	Parent=Os04t0453950-00
Chr04	irgsp1_rep	mRNA	22744192	22748050	.	+	.	ID=Os04t0454200-01;Name=Os04t0454200-01;Locus_id=Os04g0454200;Note=Similar to Monosaccharide transporter 1.;Transcript_evidence=AK072059 (DDBJ%2C Best hit);ORF_evidence=Q01KA1 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J013111I22;Expression=AK072059;TENOR=Os04t0454200-01;KEGG=Os04t0454200-01
Chr04	irgsp1_rep	five_prime_UTR	22744192	22744279	.	+	.	Parent=Os04t0454200-01
Chr04	irgsp1_rep	CDS	22744280	22744418	.	+	0	Parent=Os04t0454200-01
Chr04	irgsp1_rep	CDS	22744515	22744834	.	+	2	Parent=Os04t0454200-01
Chr04	irgsp1_rep	CDS	22746756	22747850	.	+	0	Parent=Os04t0454200-01
Chr04	irgsp1_rep	three_prime_UTR	22747851	22748050	.	+	.	Parent=Os04t0454200-01
Chr04	irgsp1_rep	mRNA	22746747	22747784	.	-	.	ID=Os04t0454250-00;Name=Os04t0454250-00;Locus_id=Os04g0454250;Note=Hypothetical protein.;Transcript_evidence=EU945989 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0454250-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	22746747	22747784	.	-	0	Parent=Os04t0454250-00
Chr04	irgsp1_rep	mRNA	22761385	22766175	.	-	.	ID=Os04t0454600-00;Name=Os04t0454600-00;Locus_id=Os04g0454600;Note=Similar to OSIGBa0093K19.10 protein.;Transcript_evidence=AK066187 (DDBJ%2C Best hit);ORF_evidence=Q01K98 (UniProt);NIAS_FLcDNA=J013058P10;TENOR=Os04t0454600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22766167	22766175	.	-	.	Parent=Os04t0454600-00
Chr04	irgsp1_rep	CDS	22765790	22766166	.	-	0	Parent=Os04t0454600-00
Chr04	irgsp1_rep	CDS	22765023	22765573	.	-	1	Parent=Os04t0454600-00
Chr04	irgsp1_rep	CDS	22763585	22763823	.	-	2	Parent=Os04t0454600-00
Chr04	irgsp1_rep	CDS	22761481	22762035	.	-	0	Parent=Os04t0454600-00
Chr04	irgsp1_rep	three_prime_UTR	22761385	22761480	.	-	.	Parent=Os04t0454600-00
Chr04	irgsp1_rep	mRNA	22773497	22778458	.	-	.	ID=Os04t0454900-01;Name=Os04t0454900-01;Locus_id=Os04g0454900;Note=Similar to Mitotic spindle checkpoint component mad3.;Transcript_evidence=AK073191 (DDBJ%2C Best hit);ORF_evidence=B6U2B3 (UniProt);NIAS_FLcDNA=J033016G07;Expression=AK073191;TENOR=Os04t0454900-01;KEGG=Os04t0454900-01
Chr04	irgsp1_rep	five_prime_UTR	22778276	22778458	.	-	.	Parent=Os04t0454900-01
Chr04	irgsp1_rep	CDS	22778231	22778275	.	-	0	Parent=Os04t0454900-01
Chr04	irgsp1_rep	CDS	22775662	22775758	.	-	0	Parent=Os04t0454900-01
Chr04	irgsp1_rep	CDS	22775399	22775475	.	-	2	Parent=Os04t0454900-01
Chr04	irgsp1_rep	CDS	22775204	22775289	.	-	0	Parent=Os04t0454900-01
Chr04	irgsp1_rep	CDS	22775022	22775102	.	-	1	Parent=Os04t0454900-01
Chr04	irgsp1_rep	CDS	22774860	22774932	.	-	1	Parent=Os04t0454900-01
Chr04	irgsp1_rep	CDS	22773690	22774106	.	-	0	Parent=Os04t0454900-01
Chr04	irgsp1_rep	three_prime_UTR	22773497	22773689	.	-	.	Parent=Os04t0454900-01
Chr04	irgsp1_rep	mRNA	22782808	22783859	.	+	.	ID=Os04t0455200-00;Name=Os04t0455200-00;Locus_id=Os04g0455200;Note=Similar to OSIGBa0093K19.7 protein.;Transcript_evidence=EU967388 (DDBJ);ORF_evidence=Q01KA1 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transmembrane transporter activity (GO:0022857);InterPro=General substrate transporter (IPR005828);TENOR=Os04t0455200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22782808	22782811	.	+	.	Parent=Os04t0455200-00
Chr04	irgsp1_rep	CDS	22782812	22782890	.	+	0	Parent=Os04t0455200-00
Chr04	irgsp1_rep	CDS	22783396	22783859	.	+	2	Parent=Os04t0455200-00
Chr04	irgsp1_rep	mRNA	22785425	22791245	.	-	.	ID=Os04t0455401-01;Name=Os04t0455401-01;Locus_id=Os04g0455401;Note=Similar to OSIGBa0093K19.10 protein.;Transcript_evidence=AK073427 (DDBJ%2C Best hit);ORF_evidence=Q01K98 (UniProt);NIAS_FLcDNA=J033044A13;Expression=AK073427;TENOR=Os04t0455401-01;KEGG=Os04t0455401-01
Chr04	irgsp1_rep	five_prime_UTR	22791025	22791245	.	-	.	Parent=Os04t0455401-01
Chr04	irgsp1_rep	CDS	22790924	22791024	.	-	0	Parent=Os04t0455401-01
Chr04	irgsp1_rep	CDS	22790157	22790707	.	-	1	Parent=Os04t0455401-01
Chr04	irgsp1_rep	CDS	22788714	22788952	.	-	2	Parent=Os04t0455401-01
Chr04	irgsp1_rep	CDS	22786608	22787162	.	-	0	Parent=Os04t0455401-01
Chr04	irgsp1_rep	three_prime_UTR	22785425	22786607	.	-	.	Parent=Os04t0455401-01
Chr04	irgsp1_rep	mRNA	22784906	22791194	.	-	.	ID=Os04t0455401-02;Name=Os04t0455401-02;Locus_id=Os04g0455401;Note=Similar to OSIGBa0093K19.10 protein.;Transcript_evidence=AK101647 (DDBJ%2C Best hit);ORF_evidence=Q01K98 (UniProt);NIAS_FLcDNA=J033055P18;Expression=AK101647;TENOR=Os04t0455401-02;KEGG=Os04t0455401-02
Chr04	irgsp1_rep	five_prime_UTR	22791025	22791194	.	-	.	Parent=Os04t0455401-02
Chr04	irgsp1_rep	CDS	22790924	22791024	.	-	0	Parent=Os04t0455401-02
Chr04	irgsp1_rep	CDS	22790157	22790707	.	-	1	Parent=Os04t0455401-02
Chr04	irgsp1_rep	CDS	22788714	22788952	.	-	2	Parent=Os04t0455401-02
Chr04	irgsp1_rep	CDS	22786608	22787162	.	-	0	Parent=Os04t0455401-02
Chr04	irgsp1_rep	three_prime_UTR	22784906	22786607	.	-	.	Parent=Os04t0455401-02
Chr04	irgsp1_rep	mRNA	22784803	22786334	.	-	.	ID=Os04t0455401-03;Name=Os04t0455401-03;Locus_id=Os04g0455401;Note=Hypothetical conserved gene.;Transcript_evidence=AK064317 (DDBJ%2C Best hit);ORF_evidence=B9FFH4 (UniProt);NIAS_FLcDNA=002-107-D02;Expression=AK064317;TENOR=Os04t0455401-03;KEGG=Os04t0455401-03
Chr04	irgsp1_rep	five_prime_UTR	22785959	22786334	.	-	.	Parent=Os04t0455401-03
Chr04	irgsp1_rep	CDS	22785140	22785958	.	-	0	Parent=Os04t0455401-03
Chr04	irgsp1_rep	three_prime_UTR	22784803	22785139	.	-	.	Parent=Os04t0455401-03
Chr04	irgsp1_rep	mRNA	22795172	22798775	.	-	.	ID=Os04t0455600-02;Name=Os04t0455600-02;Locus_id=Os04g0455600;Oryzabase Gene Symbol Synonym(s)=HN1L;Oryzabase Gene Name Synonym(s)=HN1-like gene%2C hematopoietic- and neurologic-expressed sequence 1-like gene;Note=Similar to H0523F07.2 protein.;Transcript_evidence=AK103788 (DDBJ%2C Best hit),AK101129 (DDBJ%2C Best hit);ORF_evidence=Q01JR1 (UniProt);NIAS_FLcDNA=J033145I18,J033025P19;Oryzabase=14530;Expression=AK103788;TENOR=Os04t0455600-02;KEGG=Os04t0455600-02
Chr04	irgsp1_rep	five_prime_UTR	22798680	22798775	.	-	.	Parent=Os04t0455600-02
Chr04	irgsp1_rep	CDS	22798551	22798679	.	-	0	Parent=Os04t0455600-02
Chr04	irgsp1_rep	CDS	22798340	22798413	.	-	0	Parent=Os04t0455600-02
Chr04	irgsp1_rep	CDS	22797116	22797245	.	-	1	Parent=Os04t0455600-02
Chr04	irgsp1_rep	CDS	22796418	22796729	.	-	0	Parent=Os04t0455600-02
Chr04	irgsp1_rep	CDS	22795530	22795802	.	-	0	Parent=Os04t0455600-02
Chr04	irgsp1_rep	three_prime_UTR	22795172	22795529	.	-	.	Parent=Os04t0455600-02
Chr04	irgsp1_rep	mRNA	22795530	22796751	.	+	.	ID=Os04t0455650-00;Name=Os04t0455650-00;Locus_id=Os04g0455650;Note=Conserved hypothetical protein.;Transcript_evidence=BT068550 (DDBJ);ORF_evidence=C4J255 (UniProt);TENOR=Os04t0455650-00
Chr04	irgsp1_rep	five_prime_UTR	22795530	22795587	.	+	.	Parent=Os04t0455650-00
Chr04	irgsp1_rep	CDS	22795588	22795817	.	+	0	Parent=Os04t0455650-00
Chr04	irgsp1_rep	CDS	22796382	22796751	.	+	1	Parent=Os04t0455650-00
Chr04	irgsp1_rep	mRNA	22800689	22801366	.	-	.	ID=Os04t0455700-00;Name=Os04t0455700-00;Locus_id=Os04g0455700;Note=Similar to H0523F07.3 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01JR0 (UniProt);TENOR=Os04t0455700-00;KEGG=Os04t0455700-00
Chr04	irgsp1_rep	CDS	22800689	22801366	.	-	0	Parent=Os04t0455700-00
Chr04	irgsp1_rep	mRNA	22802750	22806020	.	-	.	ID=Os04t0455800-01;Name=Os04t0455800-01;Locus_id=Os04g0455800;Note=Similar to Lipoic acid synthetase%2C mitochondrial precursor (Lip-syn) (Lipoate synthase) (mLIP1).;Transcript_evidence=AK120652 (DDBJ%2C Best hit);ORF_evidence=Q7XRF1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: lipoate biosynthetic process (GO:0009107),Molecular Function: catalytic activity (GO:0003824),Molecular Function: lipoate synthase activity (GO:0016992),Molecular Function: iron-sulfur cluster binding (GO:0051536),Molecular Function: 4 iron%2C 4 sulfur cluster binding (GO:0051539);InterPro=Lipoate synthase (IPR003698),Elongator protein 3/MiaB/NifB (IPR006638),Radical SAM (IPR007197),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J013157E03;Expression=AK120652;TENOR=Os04t0455800-01;KEGG=Os04t0455800-01 (EC:2.8.1.8)
Chr04	irgsp1_rep	five_prime_UTR	22805911	22806020	.	-	.	Parent=Os04t0455800-01
Chr04	irgsp1_rep	CDS	22805468	22805910	.	-	0	Parent=Os04t0455800-01
Chr04	irgsp1_rep	CDS	22804511	22804722	.	-	1	Parent=Os04t0455800-01
Chr04	irgsp1_rep	CDS	22804017	22804396	.	-	2	Parent=Os04t0455800-01
Chr04	irgsp1_rep	CDS	22803033	22803146	.	-	0	Parent=Os04t0455800-01
Chr04	irgsp1_rep	three_prime_UTR	22802750	22803032	.	-	.	Parent=Os04t0455800-01
Chr04	irgsp1_rep	mRNA	22806724	22812160	.	-	.	ID=Os04t0455900-01;Name=Os04t0455900-01;Locus_id=Os04g0455900;Note=Protein of unknown function DUF1692 domain containing protein.;Transcript_evidence=AK121783 (DDBJ%2C Best hit);ORF_evidence=Q01JQ8 (UniProt);InterPro=Domain of unknown function DUF1692 (IPR012936);NIAS_FLcDNA=J033094A05;Expression=AK121783;TENOR=Os04t0455900-01;KEGG=Os04t0455900-01
Chr04	irgsp1_rep	five_prime_UTR	22811993	22812160	.	-	.	Parent=Os04t0455900-01
Chr04	irgsp1_rep	CDS	22811851	22811992	.	-	0	Parent=Os04t0455900-01
Chr04	irgsp1_rep	CDS	22810927	22811000	.	-	2	Parent=Os04t0455900-01
Chr04	irgsp1_rep	CDS	22810553	22810636	.	-	0	Parent=Os04t0455900-01
Chr04	irgsp1_rep	CDS	22810360	22810440	.	-	0	Parent=Os04t0455900-01
Chr04	irgsp1_rep	CDS	22809934	22810014	.	-	0	Parent=Os04t0455900-01
Chr04	irgsp1_rep	CDS	22809192	22809284	.	-	0	Parent=Os04t0455900-01
Chr04	irgsp1_rep	CDS	22808854	22809060	.	-	0	Parent=Os04t0455900-01
Chr04	irgsp1_rep	three_prime_UTR	22808695	22808853	.	-	.	Parent=Os04t0455900-01
Chr04	irgsp1_rep	three_prime_UTR	22808512	22808563	.	-	.	Parent=Os04t0455900-01
Chr04	irgsp1_rep	three_prime_UTR	22808330	22808383	.	-	.	Parent=Os04t0455900-01
Chr04	irgsp1_rep	three_prime_UTR	22808118	22808210	.	-	.	Parent=Os04t0455900-01
Chr04	irgsp1_rep	three_prime_UTR	22807853	22807919	.	-	.	Parent=Os04t0455900-01
Chr04	irgsp1_rep	three_prime_UTR	22806724	22807471	.	-	.	Parent=Os04t0455900-01
Chr04	irgsp1_rep	mRNA	22806717	22810593	.	-	.	ID=Os04t0455900-02;Name=Os04t0455900-02;Locus_id=Os04g0455900;Note=Similar to H0523F07.5 protein.;Transcript_evidence=AK063763 (DDBJ%2C Best hit);ORF_evidence=Q01JQ8 (UniProt);InterPro=Domain of unknown function DUF1692 (IPR012936);NIAS_FLcDNA=001-121-B02;Expression=AK063763;TENOR=Os04t0455900-02;KEGG=Os04t0455900-02
Chr04	irgsp1_rep	five_prime_UTR	22810592	22810593	.	-	.	Parent=Os04t0455900-02
Chr04	irgsp1_rep	CDS	22810553	22810591	.	-	0	Parent=Os04t0455900-02
Chr04	irgsp1_rep	CDS	22810360	22810440	.	-	0	Parent=Os04t0455900-02
Chr04	irgsp1_rep	CDS	22809934	22810014	.	-	0	Parent=Os04t0455900-02
Chr04	irgsp1_rep	CDS	22809192	22809284	.	-	0	Parent=Os04t0455900-02
Chr04	irgsp1_rep	CDS	22808881	22809060	.	-	0	Parent=Os04t0455900-02
Chr04	irgsp1_rep	CDS	22808695	22808762	.	-	0	Parent=Os04t0455900-02
Chr04	irgsp1_rep	CDS	22808512	22808563	.	-	1	Parent=Os04t0455900-02
Chr04	irgsp1_rep	CDS	22808330	22808383	.	-	0	Parent=Os04t0455900-02
Chr04	irgsp1_rep	CDS	22808118	22808210	.	-	0	Parent=Os04t0455900-02
Chr04	irgsp1_rep	CDS	22807853	22807919	.	-	0	Parent=Os04t0455900-02
Chr04	irgsp1_rep	CDS	22807380	22807471	.	-	2	Parent=Os04t0455900-02
Chr04	irgsp1_rep	three_prime_UTR	22806717	22807379	.	-	.	Parent=Os04t0455900-02
Chr04	irgsp1_rep	mRNA	22814406	22815161	.	+	.	ID=Os04t0456100-01;Name=Os04t0456100-01;Locus_id=Os04g0456100;Note=Conserved hypothetical protein.;Transcript_evidence=AK070866 (DDBJ%2C Best hit);ORF_evidence=A3AUF7 (UniProt);NIAS_FLcDNA=J023072D10;TENOR=Os04t0456100-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22814406	22814426	.	+	.	Parent=Os04t0456100-01
Chr04	irgsp1_rep	CDS	22814427	22814744	.	+	0	Parent=Os04t0456100-01
Chr04	irgsp1_rep	three_prime_UTR	22814745	22815161	.	+	.	Parent=Os04t0456100-01
Chr04	irgsp1_rep	mRNA	22821083	22821718	.	+	.	ID=Os04t0456200-00;Name=Os04t0456200-00;Locus_id=Os04g0456200;Note=Similar to H0523F07.6 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01JQ7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Lipoxygenase%2C LH2 (IPR001024),Lipase/lipooxygenase%2C PLAT/LH2 (IPR008976);TENOR=Os04t0456200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	22821083	22821133	.	+	0	Parent=Os04t0456200-00
Chr04	irgsp1_rep	CDS	22821215	22821718	.	+	0	Parent=Os04t0456200-00
Chr04	irgsp1_rep	mRNA	22822633	22822926	.	+	.	ID=Os04t0456300-00;Name=Os04t0456300-00;Locus_id=Os04g0456300;Note=Similar to H0523F07.7 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01JQ6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Lipoxygenase%2C LH2 (IPR001024),Lipase/lipooxygenase%2C PLAT/LH2 (IPR008976);TENOR=Os04t0456300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	22822633	22822926	.	+	0	Parent=Os04t0456300-00
Chr04	irgsp1_rep	mRNA	22829317	22830301	.	+	.	ID=Os04t0456700-01;Name=Os04t0456700-01;Locus_id=Os04g0456700;Note=Similar to TMV induced protein 1-2.;Transcript_evidence=AK065178 (DDBJ%2C Best hit);ORF_evidence=Q01JQ5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Lipoxygenase%2C LH2 (IPR001024),Lipase/lipooxygenase%2C PLAT/LH2 (IPR008976);NIAS_FLcDNA=J013002D12;Expression=AK065178;TENOR=Os04t0456700-01;KEGG=Os04t0456700-01
Chr04	irgsp1_rep	five_prime_UTR	22829317	22829413	.	+	.	Parent=Os04t0456700-01
Chr04	irgsp1_rep	CDS	22829414	22829461	.	+	0	Parent=Os04t0456700-01
Chr04	irgsp1_rep	CDS	22829553	22830086	.	+	0	Parent=Os04t0456700-01
Chr04	irgsp1_rep	three_prime_UTR	22830087	22830301	.	+	.	Parent=Os04t0456700-01
Chr04	irgsp1_rep	mRNA	22834019	22835912	.	+	.	ID=Os04t0456900-00;Name=Os04t0456900-00;Locus_id=Os04g0456900;CGSNL Gene Symbol=EIL6;CGSNL Gene Name=ETHYLENE INSENSITIVE-LIKE GENE 6;Oryzabase Gene Symbol Synonym(s)=OsEIL6;Oryzabase Gene Name Synonym(s)=EIN3-like protein 6%2C ETHYLENE INSENSITIVE3-LIKE 6%2C EIN3-LIKE 6;Note=Similar to H0523F07.9 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01JQ4 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Ethylene insensitive 3 (IPR006957),Ethylene insensitive 3-like protein%2C DNA-binding domain (IPR023278);Oryzabase=6130;TENOR=Os04t0456900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	22834019	22834806	.	+	0	Parent=Os04t0456900-00
Chr04	irgsp1_rep	CDS	22835681	22835912	.	+	1	Parent=Os04t0456900-00
Chr04	irgsp1_rep	mRNA	22835913	22837163	.	-	.	ID=Os04t0457000-01;Name=Os04t0457000-01;Locus_id=Os04g0457000;Oryzabase Gene Symbol Synonym(s)=CP24%2C Lhcb6%2C OsCP24%2C OsLhcb6;Oryzabase Gene Name Synonym(s)=light-harvesting protein CP24%2C PSII CP24%2C light-harvesting complex subunit b6;Note=Similar to Chlorophyll a/b-binding protein CP24%2C photosystem II (Fragment).;Transcript_evidence=AK066070 (DDBJ%2C Best hit),AK104811 (DDBJ%2C Best hit);ORF_evidence=Q01JQ3 (UniProt);NIAS_FLcDNA=J013055K10,001-040-G02;Oryzabase=9602;TENOR=Os04t0457000-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22837102	22837163	.	-	.	Parent=Os04t0457000-01
Chr04	irgsp1_rep	CDS	22836893	22837101	.	-	0	Parent=Os04t0457000-01
Chr04	irgsp1_rep	CDS	22836233	22836782	.	-	1	Parent=Os04t0457000-01
Chr04	irgsp1_rep	three_prime_UTR	22835913	22836232	.	-	.	Parent=Os04t0457000-01
Chr04	irgsp1_rep	mRNA	22836195	22837571	.	+	.	ID=Os04t0457100-01;Name=Os04t0457100-01;Locus_id=Os04g0457100;Note=Hypothetical protein.;Transcript_evidence=AK108672 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-148-H08;Expression=AK108672;TENOR=Os04t0457100-01;KEGG=Os04t0457100-01
Chr04	irgsp1_rep	five_prime_UTR	22836195	22836551	.	+	.	Parent=Os04t0457100-01
Chr04	irgsp1_rep	CDS	22836552	22836917	.	+	0	Parent=Os04t0457100-01
Chr04	irgsp1_rep	three_prime_UTR	22836918	22837571	.	+	.	Parent=Os04t0457100-01
Chr04	irgsp1_rep	mRNA	22837855	22840529	.	-	.	ID=Os04t0457200-01;Name=Os04t0457200-01;Locus_id=Os04g0457200;Note=Similar to H0523F07.11 protein.;Transcript_evidence=AK068563 (DDBJ%2C Best hit);ORF_evidence=Q01JQ2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);NIAS_FLcDNA=J013153E04;TENOR=Os04t0457200-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22840431	22840529	.	-	.	Parent=Os04t0457200-01
Chr04	irgsp1_rep	CDS	22839962	22840430	.	-	0	Parent=Os04t0457200-01
Chr04	irgsp1_rep	CDS	22838755	22838914	.	-	2	Parent=Os04t0457200-01
Chr04	irgsp1_rep	CDS	22838079	22838415	.	-	1	Parent=Os04t0457200-01
Chr04	irgsp1_rep	three_prime_UTR	22837855	22838078	.	-	.	Parent=Os04t0457200-01
Chr04	irgsp1_rep	mRNA	22848936	22851573	.	+	.	ID=Os04t0457300-01;Name=Os04t0457300-01;Locus_id=Os04g0457300;Note=Similar to H0523F07.12 protein.;Transcript_evidence=AK061416 (DDBJ%2C Best hit);ORF_evidence=Q01JQ1 (UniProt);NIAS_FLcDNA=006-306-D12;TENOR=Os04t0457300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22848936	22849045	.	+	.	Parent=Os04t0457300-01
Chr04	irgsp1_rep	CDS	22849046	22849227	.	+	0	Parent=Os04t0457300-01
Chr04	irgsp1_rep	CDS	22849558	22849591	.	+	1	Parent=Os04t0457300-01
Chr04	irgsp1_rep	CDS	22849768	22849884	.	+	0	Parent=Os04t0457300-01
Chr04	irgsp1_rep	CDS	22850236	22850619	.	+	0	Parent=Os04t0457300-01
Chr04	irgsp1_rep	three_prime_UTR	22850620	22850674	.	+	.	Parent=Os04t0457300-01
Chr04	irgsp1_rep	three_prime_UTR	22850927	22851078	.	+	.	Parent=Os04t0457300-01
Chr04	irgsp1_rep	three_prime_UTR	22851177	22851573	.	+	.	Parent=Os04t0457300-01
Chr04	irgsp1_rep	mRNA	22853864	22854421	.	-	.	ID=Os04t0457400-00;Name=Os04t0457400-00;Locus_id=Os04g0457400;Note=Conserved hypothetical protein.;Transcript_evidence=EU953664 (DDBJ);ORF_evidence=NP_001052973.2 (RefSeq);TENOR=Os04t0457400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	22853864	22854421	.	-	0	Parent=Os04t0457400-00
Chr04	irgsp1_rep	mRNA	22855680	22860859	.	-	.	ID=Os04t0457500-01;Name=Os04t0457500-01;Locus_id=Os04g0457500;Note=Similar to H0523F07.13 protein.;Transcript_evidence=AK241500 (DDBJ%2C Best hit);ORF_evidence=Q01JQ0 (UniProt);GO=Molecular Function: gamma-glutamyltransferase activity (GO:0003840);InterPro=Gamma-glutamyltranspeptidase (IPR000101);NIAS_FLcDNA=J065167K08;TENOR=Os04t0457500-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22860808	22860859	.	-	.	Parent=Os04t0457500-01
Chr04	irgsp1_rep	CDS	22860801	22860807	.	-	0	Parent=Os04t0457500-01
Chr04	irgsp1_rep	CDS	22860308	22860648	.	-	2	Parent=Os04t0457500-01
Chr04	irgsp1_rep	CDS	22857253	22857768	.	-	0	Parent=Os04t0457500-01
Chr04	irgsp1_rep	CDS	22856837	22857072	.	-	0	Parent=Os04t0457500-01
Chr04	irgsp1_rep	CDS	22856438	22856702	.	-	1	Parent=Os04t0457500-01
Chr04	irgsp1_rep	CDS	22856164	22856301	.	-	0	Parent=Os04t0457500-01
Chr04	irgsp1_rep	CDS	22855832	22856053	.	-	0	Parent=Os04t0457500-01
Chr04	irgsp1_rep	three_prime_UTR	22855680	22855831	.	-	.	Parent=Os04t0457500-01
Chr04	irgsp1_rep	mRNA	22864408	22864455	.	-	.	ID=Os04t0457600-00;Name=Os04t0457600-00;Locus_id=Os04g0457600;Note=Non-protein coding transcript.;Transcript_evidence=X02683 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0457600-00
Chr04	irgsp1_rep	exon	22864408	22864455	.	-	.	Parent=Os04t0457600-00
Chr04	irgsp1_rep	mRNA	22865860	22866935	.	+	.	ID=Os04t0457700-01;Name=Os04t0457700-01;Locus_id=Os04g0457700;Note=Similar to H0523F07.14 protein.;Transcript_evidence=AK242111 (DDBJ%2C Best hit);ORF_evidence=Q01JP9 (UniProt);NIAS_FLcDNA=J075145N15;TENOR=Os04t0457700-01;KEGG=Os04t0457700-01
Chr04	irgsp1_rep	five_prime_UTR	22865860	22866206	.	+	.	Parent=Os04t0457700-01
Chr04	irgsp1_rep	CDS	22866207	22866659	.	+	0	Parent=Os04t0457700-01
Chr04	irgsp1_rep	three_prime_UTR	22866660	22866935	.	+	.	Parent=Os04t0457700-01
Chr04	irgsp1_rep	mRNA	22867479	22872511	.	-	.	ID=Os04t0457800-01;Name=Os04t0457800-01;Locus_id=Os04g0457800;RAP-DB Gene Symbol Synonym(s)=OsSERK2%2C OsSERK1;RAP-DB Gene Name Synonym(s)=somatic embryogenesis receptor kinase 2;Oryzabase Gene Symbol Synonym(s)=OsSERK2%2C OsBiSERK1%2C OsSERK1%2C OsSerk2%2C OsBAK1-2;Oryzabase Gene Name Synonym(s)=somatic embryogenesis receptor-like kinase 2%2C somatic embryogenesis receptor kinase 2%2C bri1-associated receptor kinase 1 (BAK1) homologue 2;Note=A member of the somatic embryogenesis receptor kinases (SERKs) family%2C Positive regulation of somatic embryogenesis%2C Defense response%2C  Regulation of plant growth%2C Brassinosteroid (BR) signaling;Transcript_evidence=AK099777,AY652735;ORF_evidence=Q7XV05;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=Leucine-rich repeat domain superfamily (IPR032675),Protein kinase-like domain superfamily (IPR011009),Leucine-rich repeat-containing N-terminal%2C plant-type (IPR013210),Protein kinase domain (IPR000719),Leucine-rich repeat (IPR001611),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J013095F19;Manual Curation=October 31%2C 2017;Literature_PMID=24482436,19754838,16081169,15968510;Oryzabase=11761;TENOR=Os04t0457800-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22872311	22872511	.	-	.	Parent=Os04t0457800-01
Chr04	irgsp1_rep	CDS	22872208	22872310	.	-	0	Parent=Os04t0457800-01
Chr04	irgsp1_rep	CDS	22870845	22870977	.	-	2	Parent=Os04t0457800-01
Chr04	irgsp1_rep	CDS	22870681	22870752	.	-	1	Parent=Os04t0457800-01
Chr04	irgsp1_rep	CDS	22870327	22870470	.	-	1	Parent=Os04t0457800-01
Chr04	irgsp1_rep	CDS	22870132	22870203	.	-	1	Parent=Os04t0457800-01
Chr04	irgsp1_rep	CDS	22869945	22870016	.	-	1	Parent=Os04t0457800-01
Chr04	irgsp1_rep	CDS	22869751	22869863	.	-	1	Parent=Os04t0457800-01
Chr04	irgsp1_rep	CDS	22869503	22869631	.	-	2	Parent=Os04t0457800-01
Chr04	irgsp1_rep	CDS	22869081	22869422	.	-	2	Parent=Os04t0457800-01
Chr04	irgsp1_rep	CDS	22868357	22868751	.	-	2	Parent=Os04t0457800-01
Chr04	irgsp1_rep	CDS	22867686	22867997	.	-	0	Parent=Os04t0457800-01
Chr04	irgsp1_rep	three_prime_UTR	22867479	22867685	.	-	.	Parent=Os04t0457800-01
Chr04	irgsp1_rep	mRNA	22867357	22869205	.	-	.	ID=Os04t0457800-02;Name=Os04t0457800-02;Locus_id=Os04g0457800;Oryzabase Gene Symbol Synonym(s)=OsSERK2%2C OsBiSERK1%2C OsSERK1%2C OsSerk2%2C OsBAK1-2;Oryzabase Gene Name Synonym(s)=somatic embryogenesis receptor-like kinase 2%2C somatic embryogenesis receptor kinase 2%2C bri1-associated receptor kinase 1 (BAK1) homologue 2;Note=Similar to H0523F07.15 protein.;Transcript_evidence=AK105892 (DDBJ%2C Best hit),AK061767 (DDBJ%2C Best hit);ORF_evidence=Q5Y8C8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-204-E09,001-039-B11;Oryzabase=11761;TENOR=Os04t0457800-02;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22869205	22869205	.	-	.	Parent=Os04t0457800-02
Chr04	irgsp1_rep	CDS	22869081	22869204	.	-	0	Parent=Os04t0457800-02
Chr04	irgsp1_rep	CDS	22868357	22868751	.	-	2	Parent=Os04t0457800-02
Chr04	irgsp1_rep	CDS	22867686	22867997	.	-	0	Parent=Os04t0457800-02
Chr04	irgsp1_rep	three_prime_UTR	22867357	22867685	.	-	.	Parent=Os04t0457800-02
Chr04	irgsp1_rep	mRNA	22869747	22870194	.	+	.	ID=Os04t0457900-00;Name=Os04t0457900-00;Locus_id=Os04g0457900;Note=Non-protein coding transcript.;Transcript_evidence=AM939987 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0457900-00
Chr04	irgsp1_rep	exon	22869747	22869863	.	+	.	Parent=Os04t0457900-00
Chr04	irgsp1_rep	exon	22869945	22870000	.	+	.	Parent=Os04t0457900-00
Chr04	irgsp1_rep	exon	22870119	22870194	.	+	.	Parent=Os04t0457900-00
Chr04	irgsp1_rep	mRNA	22881022	22881510	.	+	.	ID=Os04t0458000-00;Name=Os04t0458000-00;Locus_id=Os04g0458000;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FFI1 (UniProt);TENOR=Os04t0458000-00
Chr04	irgsp1_rep	CDS	22881022	22881510	.	+	0	Parent=Os04t0458000-00
Chr04	irgsp1_rep	mRNA	22890297	22892741	.	+	.	ID=Os04t0458200-01;Name=Os04t0458200-01;Locus_id=Os04g0458200;RAP-DB Gene Symbol Synonym(s)=IIP4;RAP-DB Gene Name Synonym(s)=ILA1 interacting protein 4;CGSNL Gene Symbol=IIP4;CGSNL Gene Name=ILA1 INTERACTING PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=IIP4;Oryzabase Gene Name Synonym(s)=ILA1 interacting protein 4;Note=Uncanonical CCCH-tandem zinc-finger protein%2C Repression of secondary wall synthesis%2C Control of mechanical strength;Transcript_evidence=AK101398;ORF_evidence=Q0JCP7;NIAS_FLcDNA=J033037C08;Manual Curation=June 15%2C 2020;Literature_PMID=29175437;Oryzabase=10225;TENOR=Os04t0458200-01;Subcellular location=nucleus (GO:0005634)
Chr04	irgsp1_rep	five_prime_UTR	22890297	22890614	.	+	.	Parent=Os04t0458200-01
Chr04	irgsp1_rep	CDS	22890615	22892510	.	+	0	Parent=Os04t0458200-01
Chr04	irgsp1_rep	three_prime_UTR	22892511	22892741	.	+	.	Parent=Os04t0458200-01
Chr04	irgsp1_rep	mRNA	22891020	22892741	.	+	.	ID=Os04t0458200-02;Name=Os04t0458200-02;Locus_id=Os04g0458200;CGSNL Gene Symbol=IIP4;CGSNL Gene Name=ILA1 INTERACTING PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=IIP4;Oryzabase Gene Name Synonym(s)=ILA1 interacting protein 4;Note=Similar to cDNA clone:J033037C08%2C full insert sequence.;Transcript_evidence=AK060226 (DDBJ%2C Best hit);ORF_evidence=Q01JK4 (UniProt);NIAS_FLcDNA=001-002-G08;Oryzabase=10225;Expression=AK060226;TENOR=Os04t0458200-02;KEGG=Os04t0458200-02
Chr04	irgsp1_rep	CDS	22891020	22892510	.	+	0	Parent=Os04t0458200-02
Chr04	irgsp1_rep	three_prime_UTR	22892511	22892741	.	+	.	Parent=Os04t0458200-02
Chr04	irgsp1_rep	mRNA	22890333	22892786	.	-	.	ID=Os04t0458250-00;Name=Os04t0458250-00;Locus_id=Os04g0458250;Note=Hypothetical protein.;Transcript_evidence=tplb0041i03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0458250-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22892660	22892786	.	-	.	Parent=Os04t0458250-00
Chr04	irgsp1_rep	CDS	22891733	22892659	.	-	0	Parent=Os04t0458250-00
Chr04	irgsp1_rep	three_prime_UTR	22890333	22891732	.	-	.	Parent=Os04t0458250-00
Chr04	irgsp1_rep	mRNA	22893849	22898645	.	+	.	ID=Os04t0458300-01;Name=Os04t0458300-01;Locus_id=Os04g0458300;Oryzabase Gene Symbol Synonym(s)=GalM4;Note=Similar to OSIGBa0097P08.2 protein.;Transcript_evidence=AK059553 (DDBJ%2C Best hit);ORF_evidence=Q01JK3 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: hexose metabolic process (GO:0019318),Molecular Function: catalytic activity (GO:0003824),Molecular Function: isomerase activity (GO:0016853),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Aldose 1-epimerase (IPR008183),Glycoside hydrolase-type carbohydrate-binding (IPR011013),Glycoside hydrolase-type carbohydrate-binding%2C subgroup (IPR014718),Aldose 1-epimerase%2C subgroup (IPR015443);NIAS_FLcDNA=001-029-G05;Oryzabase=13325;TENOR=Os04t0458300-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22893849	22893901	.	+	.	Parent=Os04t0458300-01
Chr04	irgsp1_rep	CDS	22893902	22894097	.	+	0	Parent=Os04t0458300-01
Chr04	irgsp1_rep	CDS	22894211	22894260	.	+	2	Parent=Os04t0458300-01
Chr04	irgsp1_rep	CDS	22895357	22895480	.	+	0	Parent=Os04t0458300-01
Chr04	irgsp1_rep	CDS	22895574	22895681	.	+	2	Parent=Os04t0458300-01
Chr04	irgsp1_rep	CDS	22897848	22898512	.	+	2	Parent=Os04t0458300-01
Chr04	irgsp1_rep	three_prime_UTR	22898513	22898645	.	+	.	Parent=Os04t0458300-01
Chr04	irgsp1_rep	mRNA	22893873	22898625	.	+	.	ID=Os04t0458300-02;Name=Os04t0458300-02;Locus_id=Os04g0458300;Oryzabase Gene Symbol Synonym(s)=GalM4;Note=Similar to OSIGBa0097P08.2 protein.;Transcript_evidence=AK104444 (DDBJ%2C Best hit);ORF_evidence=Q01JK3 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: hexose metabolic process (GO:0019318),Molecular Function: catalytic activity (GO:0003824),Molecular Function: isomerase activity (GO:0016853),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Aldose 1-epimerase (IPR008183),Glycoside hydrolase-type carbohydrate-binding (IPR011013),Glycoside hydrolase-type carbohydrate-binding%2C subgroup (IPR014718),Aldose 1-epimerase%2C subgroup (IPR015443);NIAS_FLcDNA=006-210-H06;Oryzabase=13325;TENOR=Os04t0458300-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22893873	22893901	.	+	.	Parent=Os04t0458300-02
Chr04	irgsp1_rep	CDS	22893902	22894097	.	+	0	Parent=Os04t0458300-02
Chr04	irgsp1_rep	CDS	22894211	22894260	.	+	2	Parent=Os04t0458300-02
Chr04	irgsp1_rep	CDS	22895357	22895480	.	+	0	Parent=Os04t0458300-02
Chr04	irgsp1_rep	CDS	22895574	22895681	.	+	2	Parent=Os04t0458300-02
Chr04	irgsp1_rep	CDS	22897848	22898512	.	+	2	Parent=Os04t0458300-02
Chr04	irgsp1_rep	three_prime_UTR	22898513	22898625	.	+	.	Parent=Os04t0458300-02
Chr04	irgsp1_rep	mRNA	22896501	22897550	.	-	.	ID=Os04t0458400-01;Name=Os04t0458400-01;Locus_id=Os04g0458400;Note=Conserved hypothetical protein.;Transcript_evidence=AK070570 (DDBJ%2C Best hit);ORF_evidence=B8AUQ1 (UniProt);NIAS_FLcDNA=J023055N15;TENOR=Os04t0458400-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22897342	22897550	.	-	.	Parent=Os04t0458400-01
Chr04	irgsp1_rep	CDS	22897238	22897341	.	-	0	Parent=Os04t0458400-01
Chr04	irgsp1_rep	CDS	22896664	22896820	.	-	1	Parent=Os04t0458400-01
Chr04	irgsp1_rep	three_prime_UTR	22896501	22896663	.	-	.	Parent=Os04t0458400-01
Chr04	irgsp1_rep	mRNA	22902577	22905619	.	+	.	ID=Os04t0458600-01;Name=Os04t0458600-01;Locus_id=Os04g0458600;Note=Similar to ORW1943Ba0077G13.3 protein.;Transcript_evidence=AK106058 (DDBJ%2C Best hit);ORF_evidence=F2QA80 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: hexose metabolic process (GO:0019318),Molecular Function: catalytic activity (GO:0003824),Molecular Function: isomerase activity (GO:0016853),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Aldose 1-epimerase (IPR008183),Glycoside hydrolase-type carbohydrate-binding (IPR011013),Glycoside hydrolase-type carbohydrate-binding%2C subgroup (IPR014718),Aldose 1-epimerase%2C subgroup (IPR015443);NIAS_FLcDNA=001-206-F10;TENOR=Os04t0458600-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22902577	22902639	.	+	.	Parent=Os04t0458600-01
Chr04	irgsp1_rep	CDS	22902640	22902826	.	+	0	Parent=Os04t0458600-01
Chr04	irgsp1_rep	CDS	22902922	22902968	.	+	2	Parent=Os04t0458600-01
Chr04	irgsp1_rep	CDS	22904401	22904524	.	+	0	Parent=Os04t0458600-01
Chr04	irgsp1_rep	CDS	22904610	22904717	.	+	2	Parent=Os04t0458600-01
Chr04	irgsp1_rep	CDS	22904806	22905428	.	+	2	Parent=Os04t0458600-01
Chr04	irgsp1_rep	three_prime_UTR	22905429	22905619	.	+	.	Parent=Os04t0458600-01
Chr04	irgsp1_rep	mRNA	22908544	22910057	.	-	.	ID=Os04t0458800-01;Name=Os04t0458800-01;Locus_id=Os04g0458800;Note=Similar to OSIGBa0097P08.4 protein.;Transcript_evidence=AK107933 (DDBJ%2C Best hit);ORF_evidence=Q01JK1 (UniProt);NIAS_FLcDNA=002-135-A04;TENOR=Os04t0458800-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22909990	22910057	.	-	.	Parent=Os04t0458800-01
Chr04	irgsp1_rep	CDS	22909882	22909989	.	-	0	Parent=Os04t0458800-01
Chr04	irgsp1_rep	CDS	22908978	22909040	.	-	0	Parent=Os04t0458800-01
Chr04	irgsp1_rep	CDS	22908698	22908841	.	-	0	Parent=Os04t0458800-01
Chr04	irgsp1_rep	three_prime_UTR	22908544	22908697	.	-	.	Parent=Os04t0458800-01
Chr04	irgsp1_rep	mRNA	22910423	22912423	.	-	.	ID=Os04t0458900-01;Name=Os04t0458900-01;Locus_id=Os04g0458900;CGSNL Gene Symbol=PME14;CGSNL Gene Name=PECTIN METHYLESTERASE 14;Oryzabase Gene Symbol Synonym(s)=OsPME14;Oryzabase Gene Name Synonym(s)=pectin methylesterase 14;Note=Similar to Pectin methylesterase-like protein.;Transcript_evidence=AK121454 (DDBJ%2C Best hit);ORF_evidence=F2QA81 (UniProt);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectinesterase inhibitor (IPR006501),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),Pectinesterase%2C active site (IPR018040);NIAS_FLcDNA=J023142P03;Oryzabase=13178;Expression=AK121454;TENOR=Os04t0458900-01;KEGG=Os04t0458900-01
Chr04	irgsp1_rep	five_prime_UTR	22912408	22912423	.	-	.	Parent=Os04t0458900-01
Chr04	irgsp1_rep	CDS	22910701	22912407	.	-	0	Parent=Os04t0458900-01
Chr04	irgsp1_rep	three_prime_UTR	22910423	22910700	.	-	.	Parent=Os04t0458900-01
Chr04	irgsp1_rep	mRNA	22914766	22921280	.	-	.	ID=Os04t0459000-01;Name=Os04t0459000-01;Locus_id=Os04g0459000;RAP-DB Gene Symbol Synonym(s)=MDR13%2C OsABCB14%2C OsPGP14%2C OsMDR13%2C OsABCB14_1%2C OsABCB14_2;RAP-DB Gene Name Synonym(s)=MULTIDRUG RESISTANCE 13%2C ABC transporter superfamily ABCB subgroup member 14%2C P-Glycoprotein 14%2C multidrug resistance 13;CGSNL Gene Symbol=MDR13;CGSNL Gene Name=MULTIDRUG RESISTANCE 13;Oryzabase Gene Symbol Synonym(s)=OsABCB14%2C ABCB14%2C OsPGP14%2C OsMDR13%2C OsABCB14_1%2C OsABCB14_2;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCB subgroup member 14%2C P-Glycoprotein 14%2C multidrug resistance 13;Note=Multidrug-resistance(MDR)-like ATP Binding Cassette B (ABCB) transporter%2C P-glyco-protein%2C Auxin transport%2C Iron homeostasis;Transcript_evidence=AJ535059,AK103526;ORF_evidence=Q8GU77;GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626),Cellular Component: integral component of membrane (GO:0016021);InterPro=ABC transporter type 1%2C transmembrane domain (IPR011527),P-loop containing nucleoside triphosphate hydrolase (IPR027417),ABC transporter-like (IPR003439),AAA+ ATPase domain (IPR003593),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=J033131L11;Manual Curation=January 21%2C 2015;Literature_PMID=24798203,12644668;Oryzabase=11933;TENOR=Os04t0459000-01;KEGG=Os04t0459000-01
Chr04	irgsp1_rep	five_prime_UTR	22921061	22921280	.	-	.	Parent=Os04t0459000-01
Chr04	irgsp1_rep	CDS	22920791	22921060	.	-	0	Parent=Os04t0459000-01
Chr04	irgsp1_rep	CDS	22920620	22920674	.	-	0	Parent=Os04t0459000-01
Chr04	irgsp1_rep	CDS	22920357	22920532	.	-	2	Parent=Os04t0459000-01
Chr04	irgsp1_rep	CDS	22920065	22920265	.	-	0	Parent=Os04t0459000-01
Chr04	irgsp1_rep	CDS	22919377	22919636	.	-	0	Parent=Os04t0459000-01
Chr04	irgsp1_rep	CDS	22918962	22919278	.	-	1	Parent=Os04t0459000-01
Chr04	irgsp1_rep	CDS	22918653	22918876	.	-	2	Parent=Os04t0459000-01
Chr04	irgsp1_rep	CDS	22917648	22918473	.	-	0	Parent=Os04t0459000-01
Chr04	irgsp1_rep	CDS	22917332	22917573	.	-	2	Parent=Os04t0459000-01
Chr04	irgsp1_rep	CDS	22914950	22916158	.	-	0	Parent=Os04t0459000-01
Chr04	irgsp1_rep	three_prime_UTR	22914766	22914949	.	-	.	Parent=Os04t0459000-01
Chr04	irgsp1_rep	mRNA	22929086	22929883	.	+	.	ID=Os04t0459200-01;Name=Os04t0459200-01;Locus_id=Os04g0459200;Note=Hypothetical protein.;Transcript_evidence=AK107705 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-132-D03;TENOR=Os04t0459200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	22929086	22929087	.	+	.	Parent=Os04t0459200-01
Chr04	irgsp1_rep	CDS	22929088	22929309	.	+	0	Parent=Os04t0459200-01
Chr04	irgsp1_rep	three_prime_UTR	22929310	22929460	.	+	.	Parent=Os04t0459200-01
Chr04	irgsp1_rep	three_prime_UTR	22929552	22929883	.	+	.	Parent=Os04t0459200-01
Chr04	irgsp1_rep	mRNA	22937162	22939007	.	+	.	ID=Os04t0459500-01;Name=Os04t0459500-01;Locus_id=Os04g0459500;Note=Similar to H0219H12.1 protein.;Transcript_evidence=AK067817 (DDBJ%2C Best hit);ORF_evidence=Q01IJ6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620);InterPro=Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain (IPR020829),Glyceraldehyde/Erythrose phosphate dehydrogenase family (IPR020831);NIAS_FLcDNA=J013116O22;Expression=AK067817;TENOR=Os04t0459500-01;KEGG=Os04t0459500-01 (EC:1.2.1.13)
Chr04	irgsp1_rep	five_prime_UTR	22937162	22937202	.	+	.	Parent=Os04t0459500-01
Chr04	irgsp1_rep	CDS	22937203	22937244	.	+	0	Parent=Os04t0459500-01
Chr04	irgsp1_rep	CDS	22937342	22937452	.	+	0	Parent=Os04t0459500-01
Chr04	irgsp1_rep	CDS	22937552	22937588	.	+	0	Parent=Os04t0459500-01
Chr04	irgsp1_rep	CDS	22938462	22938694	.	+	2	Parent=Os04t0459500-01
Chr04	irgsp1_rep	three_prime_UTR	22938695	22939007	.	+	.	Parent=Os04t0459500-01
Chr04	irgsp1_rep	mRNA	22937162	22939010	.	+	.	ID=Os04t0459500-02;Name=Os04t0459500-02;Locus_id=Os04g0459500;Note=Similar to GADPH (383 AA) (Fragment).;Transcript_evidence=AK103932 (DDBJ%2C Best hit),AK071685 (DDBJ%2C Best hit),AK103922 (DDBJ%2C Best hit),AK103994 (DDBJ%2C Best hit),AK104690 (DDBJ%2C Best hit),AK119220 (DDBJ%2C Best hit),AK119522 (DDBJ%2C Best hit);ORF_evidence=Q01IJ6 (UniProt);GO=Biological Process: glucose metabolic process (GO:0006006),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620),Molecular Function: NADP binding (GO:0050661),Molecular Function: NAD binding (GO:0051287);InterPro=Glyceraldehyde-3-phosphate dehydrogenase%2C type I (IPR006424),NAD(P)-binding domain (IPR016040),Glyceraldehyde 3-phosphate dehydrogenase%2C NAD(P) binding domain (IPR020828),Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain (IPR020829),Glyceraldehyde 3-phosphate dehydrogenase%2C active site (IPR020830),Glyceraldehyde/Erythrose phosphate dehydrogenase family (IPR020831);NIAS_FLcDNA=001-013-E09,J023108H17,001-013-B10,001-018-F06,001-036-G03,001-046-H03,001-202-D11;TENOR=Os04t0459500-02
Chr04	irgsp1_rep	five_prime_UTR	22937162	22937202	.	+	.	Parent=Os04t0459500-02
Chr04	irgsp1_rep	CDS	22937203	22937244	.	+	0	Parent=Os04t0459500-02
Chr04	irgsp1_rep	CDS	22937342	22937452	.	+	0	Parent=Os04t0459500-02
Chr04	irgsp1_rep	CDS	22937552	22938104	.	+	0	Parent=Os04t0459500-02
Chr04	irgsp1_rep	CDS	22938192	22938694	.	+	2	Parent=Os04t0459500-02
Chr04	irgsp1_rep	three_prime_UTR	22938695	22939010	.	+	.	Parent=Os04t0459500-02
Chr04	irgsp1_rep	mRNA	22939492	22942295	.	-	.	ID=Os04t0459600-01;Name=Os04t0459600-01;Locus_id=Os04g0459600;Note=Mog1/PsbP%2C alpha/beta/alpha sandwich domain containing protein.;Transcript_evidence=AK061516 (DDBJ%2C Best hit);ORF_evidence=Q01IJ5 (UniProt);InterPro=Ran-interacting Mog1 protein (IPR007681),Mog1/PsbP%2C alpha/beta/alpha sandwich (IPR016123),Mog1/PsbP/DUF1795%2C alpha/beta/alpha sandwich (IPR016124);NIAS_FLcDNA=006-309-H07;Expression=AK061516;TENOR=Os04t0459600-01;KEGG=Os04t0459600-01
Chr04	irgsp1_rep	five_prime_UTR	22942082	22942295	.	-	.	Parent=Os04t0459600-01
Chr04	irgsp1_rep	CDS	22942007	22942081	.	-	0	Parent=Os04t0459600-01
Chr04	irgsp1_rep	CDS	22941842	22941877	.	-	0	Parent=Os04t0459600-01
Chr04	irgsp1_rep	CDS	22941573	22941710	.	-	0	Parent=Os04t0459600-01
Chr04	irgsp1_rep	CDS	22941335	22941421	.	-	0	Parent=Os04t0459600-01
Chr04	irgsp1_rep	CDS	22940628	22940675	.	-	0	Parent=Os04t0459600-01
Chr04	irgsp1_rep	CDS	22940460	22940536	.	-	0	Parent=Os04t0459600-01
Chr04	irgsp1_rep	CDS	22939743	22939890	.	-	1	Parent=Os04t0459600-01
Chr04	irgsp1_rep	three_prime_UTR	22939492	22939742	.	-	.	Parent=Os04t0459600-01
Chr04	irgsp1_rep	mRNA	22943925	22946878	.	-	.	ID=Os04t0459700-01;Name=Os04t0459700-01;Locus_id=Os04g0459700;Note=Similar to H0219H12.3 protein.;Transcript_evidence=AK109192 (DDBJ%2C Best hit);ORF_evidence=Q01IJ4 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleus (GO:0005634);InterPro=Nucleosome assembly protein (NAP) (IPR002164);NIAS_FLcDNA=002-156-B05;TENOR=Os04t0459700-01
Chr04	irgsp1_rep	five_prime_UTR	22946724	22946878	.	-	.	Parent=Os04t0459700-01
Chr04	irgsp1_rep	CDS	22946601	22946723	.	-	0	Parent=Os04t0459700-01
Chr04	irgsp1_rep	CDS	22945330	22945452	.	-	0	Parent=Os04t0459700-01
Chr04	irgsp1_rep	CDS	22945164	22945214	.	-	0	Parent=Os04t0459700-01
Chr04	irgsp1_rep	CDS	22944905	22944976	.	-	0	Parent=Os04t0459700-01
Chr04	irgsp1_rep	CDS	22944712	22944825	.	-	0	Parent=Os04t0459700-01
Chr04	irgsp1_rep	CDS	22944559	22944620	.	-	0	Parent=Os04t0459700-01
Chr04	irgsp1_rep	CDS	22944124	22944184	.	-	1	Parent=Os04t0459700-01
Chr04	irgsp1_rep	CDS	22943925	22943982	.	-	0	Parent=Os04t0459700-01
Chr04	irgsp1_rep	mRNA	22943177	22946874	.	-	.	ID=Os04t0459700-02;Name=Os04t0459700-02;Locus_id=Os04g0459700;Note=Nucleosome assembly protein (NAP) family protein.;Transcript_evidence=AK102874 (DDBJ%2C Best hit);ORF_evidence=Q01IJ4 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleus (GO:0005634);InterPro=Nucleosome assembly protein (NAP) (IPR002164);NIAS_FLcDNA=J033112C19;Expression=AK102874;TENOR=Os04t0459700-02;KEGG=Os04t0459700-02
Chr04	irgsp1_rep	five_prime_UTR	22946724	22946874	.	-	.	Parent=Os04t0459700-02
Chr04	irgsp1_rep	CDS	22946601	22946723	.	-	0	Parent=Os04t0459700-02
Chr04	irgsp1_rep	CDS	22945330	22945452	.	-	0	Parent=Os04t0459700-02
Chr04	irgsp1_rep	CDS	22945164	22945214	.	-	0	Parent=Os04t0459700-02
Chr04	irgsp1_rep	CDS	22944905	22944976	.	-	0	Parent=Os04t0459700-02
Chr04	irgsp1_rep	CDS	22944712	22944825	.	-	0	Parent=Os04t0459700-02
Chr04	irgsp1_rep	CDS	22944559	22944620	.	-	0	Parent=Os04t0459700-02
Chr04	irgsp1_rep	CDS	22944124	22944184	.	-	1	Parent=Os04t0459700-02
Chr04	irgsp1_rep	CDS	22943926	22943982	.	-	0	Parent=Os04t0459700-02
Chr04	irgsp1_rep	CDS	22943795	22943836	.	-	0	Parent=Os04t0459700-02
Chr04	irgsp1_rep	CDS	22943486	22943560	.	-	0	Parent=Os04t0459700-02
Chr04	irgsp1_rep	three_prime_UTR	22943177	22943485	.	-	.	Parent=Os04t0459700-02
Chr04	irgsp1_rep	mRNA	22947894	22951872	.	-	.	ID=Os04t0459800-01;Name=Os04t0459800-01;Locus_id=Os04g0459800;Note=Similar to H0219H12.4 protein.;Transcript_evidence=AK073573 (DDBJ%2C Best hit);ORF_evidence=Q01IJ3 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity%2C acting on acid anhydrides (GO:0016817);InterPro=Helicase%2C C-terminal (IPR001650),DEAD-like helicase (IPR014001),Mitochondrial degradasome RNA helicase subunit C-terminal (IPR022192);NIAS_FLcDNA=J033045A18;Expression=AK073573;TENOR=Os04t0459800-01;KEGG=Os04t0459800-01
Chr04	irgsp1_rep	five_prime_UTR	22951845	22951872	.	-	.	Parent=Os04t0459800-01
Chr04	irgsp1_rep	CDS	22949695	22951844	.	-	0	Parent=Os04t0459800-01
Chr04	irgsp1_rep	CDS	22948358	22948412	.	-	1	Parent=Os04t0459800-01
Chr04	irgsp1_rep	three_prime_UTR	22947894	22948357	.	-	.	Parent=Os04t0459800-01
Chr04	irgsp1_rep	mRNA	22947880	22951864	.	-	.	ID=Os04t0459800-02;Name=Os04t0459800-02;Locus_id=Os04g0459800;Note=DEAD-like helicase%2C N-terminal domain containing protein.;Transcript_evidence=AK105401 (DDBJ%2C Best hit);ORF_evidence=Q01IJ3 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity%2C acting on acid anhydrides (GO:0016817);InterPro=Helicase%2C C-terminal (IPR001650),DEAD-like helicase (IPR014001),Mitochondrial degradasome RNA helicase subunit C-terminal (IPR022192);NIAS_FLcDNA=001-123-C11;Expression=AK105401;TENOR=Os04t0459800-02;KEGG=Os04t0459800-02
Chr04	irgsp1_rep	five_prime_UTR	22951845	22951864	.	-	.	Parent=Os04t0459800-02
Chr04	irgsp1_rep	CDS	22951762	22951844	.	-	0	Parent=Os04t0459800-02
Chr04	irgsp1_rep	CDS	22949695	22951386	.	-	1	Parent=Os04t0459800-02
Chr04	irgsp1_rep	CDS	22948358	22948412	.	-	1	Parent=Os04t0459800-02
Chr04	irgsp1_rep	three_prime_UTR	22947880	22948357	.	-	.	Parent=Os04t0459800-02
Chr04	irgsp1_rep	mRNA	22954845	22960460	.	+	.	ID=Os04t0459900-01;Name=Os04t0459900-01;Locus_id=Os04g0459900;Oryzabase Gene Symbol Synonym(s)=OsDegp5%2C DEGP5%2C OsDeg8;Oryzabase Gene Name Synonym(s)=Deg protease 5%2C DEG PROTEASE 5;Note=Peptidase%2C trypsin-like serine and cysteine domain containing protein.;Transcript_evidence=AK065850 (DDBJ%2C Best hit);ORF_evidence=Q01IJ2 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: catalytic activity (GO:0003824),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: protein binding (GO:0005515);InterPro=Peptidase S1/S6%2C chymotrypsin/Hap (IPR001254),PDZ/DHR/GLGF (IPR001478),Peptidase S1C%2C HrtA/DegP2/Q/S (IPR001940),Peptidase cysteine/serine%2C trypsin-like (IPR009003);NIAS_FLcDNA=J013041F13;Oryzabase=20081;Expression=AK065850;TENOR=Os04t0459900-01;KEGG=Os04t0459900-01
Chr04	irgsp1_rep	five_prime_UTR	22954845	22954964	.	+	.	Parent=Os04t0459900-01
Chr04	irgsp1_rep	CDS	22954965	22955101	.	+	0	Parent=Os04t0459900-01
Chr04	irgsp1_rep	CDS	22955532	22955650	.	+	1	Parent=Os04t0459900-01
Chr04	irgsp1_rep	CDS	22955799	22955881	.	+	2	Parent=Os04t0459900-01
Chr04	irgsp1_rep	CDS	22955980	22956078	.	+	0	Parent=Os04t0459900-01
Chr04	irgsp1_rep	CDS	22956384	22956450	.	+	0	Parent=Os04t0459900-01
Chr04	irgsp1_rep	CDS	22956584	22956659	.	+	2	Parent=Os04t0459900-01
Chr04	irgsp1_rep	CDS	22956790	22956856	.	+	1	Parent=Os04t0459900-01
Chr04	irgsp1_rep	CDS	22957643	22957860	.	+	0	Parent=Os04t0459900-01
Chr04	irgsp1_rep	CDS	22958464	22958531	.	+	1	Parent=Os04t0459900-01
Chr04	irgsp1_rep	CDS	22959083	22959162	.	+	2	Parent=Os04t0459900-01
Chr04	irgsp1_rep	CDS	22959702	22959788	.	+	0	Parent=Os04t0459900-01
Chr04	irgsp1_rep	CDS	22959864	22959971	.	+	0	Parent=Os04t0459900-01
Chr04	irgsp1_rep	CDS	22960093	22960221	.	+	0	Parent=Os04t0459900-01
Chr04	irgsp1_rep	three_prime_UTR	22960222	22960460	.	+	.	Parent=Os04t0459900-01
Chr04	irgsp1_rep	mRNA	22962172	22962495	.	+	.	ID=Os04t0460050-00;Name=Os04t0460050-00;Locus_id=Os04g0460050;Note=Hypothetical conserved gene.;Transcript_evidence=AB332064 (DDBJ%2C Best hit);ORF_evidence=F2QA89 (UniProt);TENOR=Os04t0460050-00;KEGG=Os04t0460050-00
Chr04	irgsp1_rep	CDS	22962172	22962495	.	+	0	Parent=Os04t0460050-00
Chr04	irgsp1_rep	mRNA	22969845	22971859	.	+	.	ID=Os04t0460200-01;Name=Os04t0460200-01;Locus_id=Os04g0460200;RAP-DB Gene Symbol Synonym(s)=OsATL14%2C Bh4;RAP-DB Gene Name Synonym(s)=amino acid transporter-like 14%2C Black hull4;CGSNL Gene Symbol=BH4;CGSNL Gene Name=BLACK HULL 4;Oryzabase Gene Symbol Synonym(s)=Bh4%2C OsATL14%2C ATL14;Oryzabase Gene Name Synonym(s)=Black hull 4%2C amino acid transporter-like 14;Note=Amino acid transporter protein%2C Seed hull color;Transcript_evidence=FQ377518 (W1943%2C rufipogon),FQ377519 (Guangluai4%2C indica);ORF_evidence=F2QA91 (W1943%2C rufipogon);InterPro=Amino acid transporter%2C transmembrane domain (IPR013057);Manual Curation=April 19%2C 2011;Literature_PMID=21263038;Oryzabase=9300;TENOR=Os04t0460200-00;Comment=Bh4 gene is not functional in Nipponbare due to a 22-bp deletion within exon 3 which induced a frame shift%2C resulting in a premature stop codon.
Chr04	irgsp1_rep	CDS	22969845	22969896	.	+	0	Parent=Os04t0460200-01
Chr04	irgsp1_rep	CDS	22970005	22970618	.	+	2	Parent=Os04t0460200-01
Chr04	irgsp1_rep	CDS	22971785	22971859	.	+	0	Parent=Os04t0460200-01
Chr04	irgsp1_rep	mRNA	22977821	22980329	.	+	.	ID=Os04t0460300-01;Name=Os04t0460300-01;Locus_id=Os04g0460300;Oryzabase Gene Symbol Synonym(s)=OsATL13;Oryzabase Gene Name Synonym(s)=amino acid transporter-like 13;Note=Amino acid transporter%2C transmembrane domain containing protein.;Transcript_evidence=AK106202 (DDBJ%2C Best hit);ORF_evidence=Q01IJ0 (UniProt);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=001-208-F06;Oryzabase=18530;Expression=AK106202;TENOR=Os04t0460300-01;KEGG=Os04t0460300-01
Chr04	irgsp1_rep	five_prime_UTR	22977821	22977916	.	+	.	Parent=Os04t0460300-01
Chr04	irgsp1_rep	CDS	22977917	22978159	.	+	0	Parent=Os04t0460300-01
Chr04	irgsp1_rep	CDS	22978248	22978859	.	+	0	Parent=Os04t0460300-01
Chr04	irgsp1_rep	CDS	22979465	22979977	.	+	0	Parent=Os04t0460300-01
Chr04	irgsp1_rep	three_prime_UTR	22979978	22980329	.	+	.	Parent=Os04t0460300-01
Chr04	irgsp1_rep	mRNA	22980664	22981298	.	-	.	ID=Os04t0460350-00;Name=Os04t0460350-00;Locus_id=Os04g0460350;Note=Similar to predicted protein.;Transcript_evidence=CT836521 (DDBJ%2C Best hit);ORF_evidence=B6U9R4 (UniProt);TENOR=Os04t0460350-00;KEGG=Os04t0460350-00
Chr04	irgsp1_rep	five_prime_UTR	22981154	22981298	.	-	.	Parent=Os04t0460350-00
Chr04	irgsp1_rep	CDS	22980992	22981153	.	-	0	Parent=Os04t0460350-00
Chr04	irgsp1_rep	three_prime_UTR	22980664	22980991	.	-	.	Parent=Os04t0460350-00
Chr04	irgsp1_rep	mRNA	22982546	22983336	.	+	.	ID=Os04t0460400-00;Name=Os04t0460400-00;Locus_id=Os04g0460400;CGSNL Gene Symbol=CASP5;CGSNL Gene Name=CASPARIAN STRIP DOMAIN PROTEIN 5;Oryzabase Gene Symbol Synonym(s)=OsCASP5;Oryzabase Gene Name Synonym(s)=Casparian strip domain protein 5;Note=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup domain containing protein.;Transcript_evidence=FP091536 (DDBJ);ORF_evidence=GeneMark;InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup (IPR006459),Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);Oryzabase=23339;TENOR=Os04t0460400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	22982546	22982760	.	+	0	Parent=Os04t0460400-00
Chr04	irgsp1_rep	CDS	22982892	22983015	.	+	1	Parent=Os04t0460400-00
Chr04	irgsp1_rep	CDS	22983124	22983336	.	+	0	Parent=Os04t0460400-00
Chr04	irgsp1_rep	mRNA	22986591	22988088	.	+	.	ID=Os04t0460500-00;Name=Os04t0460500-00;Locus_id=Os04g0460500;Note=Similar to H0219H12.9 protein.;Transcript_evidence=BT037263 (DDBJ);ORF_evidence=Q01II8 (UniProt);GO=Biological Process: Mo-molybdopterin cofactor biosynthetic process (GO:0006777);InterPro=Molybdopterin cofactor biosynthesis C (MoaC) domain (IPR002820),Molybdenum cofactor biosynthesis C (IPR023045);TENOR=Os04t0460500-00;KEGG=Os04t0460500-00
Chr04	irgsp1_rep	five_prime_UTR	22986591	22986624	.	+	.	Parent=Os04t0460500-00
Chr04	irgsp1_rep	CDS	22986625	22986726	.	+	0	Parent=Os04t0460500-00
Chr04	irgsp1_rep	CDS	22987516	22988088	.	+	0	Parent=Os04t0460500-00
Chr04	irgsp1_rep	mRNA	22994561	22996624	.	+	.	ID=Os04t0460600-01;Name=Os04t0460600-01;Locus_id=Os04g0460600;CGSNL Gene Symbol=NAC2;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsNAC2%2C ONAC004%2C ONAC4%2C ONAC034%2C ONAC34%2C ONAC058%2C ONAC58%2C OMTN2%2C Ostil1%2C OsNAC2/ONAC004%2C OsORE1.2%2C DLN113%2C OsDLN113;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 004%2C NAC domain-containing protein 4%2C NAC domain-containing protein 34%2C NAC domain-containing protein 58%2C miR164-targeted NAC2%2C Oryza miR164-targeted NAC2%2C Oryza sativa tillering1%2C ORESARA 1.2%2C DLN repressor 113%2C DLN motif protein 113;Note=Similar to H0219H12.10 protein.;Transcript_evidence=AK071020 (DDBJ%2C Best hit);ORF_evidence=Q01II7 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=J023080H09;Oryzabase=6229;Expression=AK071020;TENOR=Os04t0460600-01;KEGG=Os04t0460600-01
Chr04	irgsp1_rep	five_prime_UTR	22994561	22994609	.	+	.	Parent=Os04t0460600-01
Chr04	irgsp1_rep	five_prime_UTR	22994994	22995049	.	+	.	Parent=Os04t0460600-01
Chr04	irgsp1_rep	CDS	22995050	22995224	.	+	0	Parent=Os04t0460600-01
Chr04	irgsp1_rep	CDS	22995359	22995744	.	+	2	Parent=Os04t0460600-01
Chr04	irgsp1_rep	three_prime_UTR	22995745	22996624	.	+	.	Parent=Os04t0460600-01
Chr04	irgsp1_rep	mRNA	22994562	22996601	.	+	.	ID=Os04t0460600-02;Name=Os04t0460600-02;Locus_id=Os04g0460600;RAP-DB Gene Symbol Synonym(s)=NAC2%2C OsNAC2%2C ONAC004%2C ONAC4%2C ONAC034%2C ONAC34%2C ONAC058%2C ONAC58%2C OMTN2%2C Ostil1%2C OsNAC2/ONAC004%2C OsORE1.2;RAP-DB Gene Name Synonym(s)=NAC DOMAIN-CONTAINING PROTEIN 2%2C NAC domain-containing protein 004%2C NAC domain-containing protein 4%2C NAC domain-containing protein 34%2C NAC domain-containing protein 58%2C miR164-targeted NAC2%2C Oryza miR164-targeted NAC2%2C Oryza sativa tillering1%2C ORESARA 1.2;CGSNL Gene Symbol=NAC2;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsNAC2%2C ONAC004%2C ONAC4%2C ONAC034%2C ONAC34%2C ONAC058%2C ONAC58%2C OMTN2%2C Ostil1%2C OsNAC2/ONAC004%2C OsORE1.2%2C DLN113%2C OsDLN113;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 004%2C NAC domain-containing protein 4%2C NAC domain-containing protein 34%2C NAC domain-containing protein 58%2C miR164-targeted NAC2%2C Oryza miR164-targeted NAC2%2C Oryza sativa tillering1%2C ORESARA 1.2%2C DLN repressor 113%2C DLN motif protein 113;Note=NAC transcription factor%2C Regulation of shoot branching%2C plant height and flowering time;Transcript_evidence=AK061745,AK104626,DQ520641;ORF_evidence=Q7XUV6;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=NAC domain (IPR003441);NIAS_FLcDNA=001-038-F10, 006-310-B03;Manual Curation=May 25%2C 2015;Literature_PMID=25754802,17888111;Oryzabase=6229;Expression=AK061745;TENOR=Os04t0460600-02;KEGG=Os04t0460600-02
Chr04	irgsp1_rep	five_prime_UTR	22994562	22994609	.	+	.	Parent=Os04t0460600-02
Chr04	irgsp1_rep	five_prime_UTR	22994994	22995049	.	+	.	Parent=Os04t0460600-02
Chr04	irgsp1_rep	CDS	22995050	22995224	.	+	0	Parent=Os04t0460600-02
Chr04	irgsp1_rep	CDS	22995359	22995654	.	+	2	Parent=Os04t0460600-02
Chr04	irgsp1_rep	CDS	22995776	22996336	.	+	0	Parent=Os04t0460600-02
Chr04	irgsp1_rep	three_prime_UTR	22996337	22996601	.	+	.	Parent=Os04t0460600-02
Chr04	irgsp1_rep	mRNA	23001749	23001796	.	-	.	ID=Os04t0460750-00;Name=Os04t0460750-00;Locus_id=Os04g0460750;Note=Non-protein coding transcript.;Transcript_evidence=X02683 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0460750-00
Chr04	irgsp1_rep	exon	23001749	23001796	.	-	.	Parent=Os04t0460750-00
Chr04	irgsp1_rep	mRNA	23004695	23005301	.	-	.	ID=Os04t0460900-01;Name=Os04t0460900-01;Locus_id=Os04g0460900;Note=Non-protein coding transcript.;Transcript_evidence=AK066716 (DDBJ%2C Best hit),AK065774 (DDBJ%2C Best hit),AK104026 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013087D01,J013040K09,001-009-H05;TENOR=Os04t0460900-01
Chr04	irgsp1_rep	exon	23004695	23005301	.	-	.	Parent=Os04t0460900-01
Chr04	irgsp1_rep	mRNA	23024212	23026644	.	+	.	ID=Os04t0461000-01;Name=Os04t0461000-01;Locus_id=Os04g0461000;Oryzabase Gene Symbol Synonym(s)=Os-MYB39%2C OsMYB39%2C MYB39;Note=Similar to Myb-related transcription factor LBM1.;Transcript_evidence=AK288415 (DDBJ%2C Best hit);ORF_evidence=Q01II6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J090031E07;Oryzabase=21764;TENOR=Os04t0461000-01;KEGG=Os04t0461000-01
Chr04	irgsp1_rep	five_prime_UTR	23024212	23024280	.	+	.	Parent=Os04t0461000-01
Chr04	irgsp1_rep	CDS	23024281	23024413	.	+	0	Parent=Os04t0461000-01
Chr04	irgsp1_rep	CDS	23024558	23024687	.	+	2	Parent=Os04t0461000-01
Chr04	irgsp1_rep	CDS	23025597	23026371	.	+	1	Parent=Os04t0461000-01
Chr04	irgsp1_rep	three_prime_UTR	23026372	23026644	.	+	.	Parent=Os04t0461000-01
Chr04	irgsp1_rep	mRNA	23025575	23026136	.	-	.	ID=Os04t0461050-00;Name=Os04t0461050-00;Locus_id=Os04g0461050;Note=Hypothetical protein.;Transcript_evidence=EU971393 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0461050-00
Chr04	irgsp1_rep	five_prime_UTR	23026135	23026136	.	-	.	Parent=Os04t0461050-00
Chr04	irgsp1_rep	CDS	23025809	23026134	.	-	0	Parent=Os04t0461050-00
Chr04	irgsp1_rep	CDS	23025651	23025741	.	-	1	Parent=Os04t0461050-00
Chr04	irgsp1_rep	three_prime_UTR	23025575	23025650	.	-	.	Parent=Os04t0461050-00
Chr04	irgsp1_rep	mRNA	23027355	23029002	.	+	.	ID=Os04t0461100-01;Name=Os04t0461100-01;Locus_id=Os04g0461100;Note=Ribosomal protein%2C PSRP-3/Ycf65 domain containing protein.;Transcript_evidence=AK068022 (DDBJ%2C Best hit);ORF_evidence=Q01II5 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: plastid (GO:0009536),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein PSRP-3/Ycf65 (IPR006924);NIAS_FLcDNA=J013130N24;Expression=AK068022;TENOR=Os04t0461100-01;KEGG=Os04t0461100-01
Chr04	irgsp1_rep	five_prime_UTR	23027355	23027390	.	+	.	Parent=Os04t0461100-01
Chr04	irgsp1_rep	CDS	23027391	23027660	.	+	0	Parent=Os04t0461100-01
Chr04	irgsp1_rep	CDS	23028505	23028786	.	+	0	Parent=Os04t0461100-01
Chr04	irgsp1_rep	three_prime_UTR	23028787	23029002	.	+	.	Parent=Os04t0461100-01
Chr04	irgsp1_rep	mRNA	23028506	23028940	.	+	.	ID=Os04t0461100-02;Name=Os04t0461100-02;Locus_id=Os04g0461100;Note=Similar to H0219H12.12 protein.;Transcript_evidence=AK058660 (DDBJ%2C Best hit);ORF_evidence=Q01II5 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: plastid (GO:0009536),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein PSRP-3/Ycf65 (IPR006924);NIAS_FLcDNA=001-018-G01;Expression=AK058660;TENOR=Os04t0461100-02;KEGG=Os04t0461100-02
Chr04	irgsp1_rep	five_prime_UTR	23028506	23028507	.	+	.	Parent=Os04t0461100-02
Chr04	irgsp1_rep	CDS	23028508	23028786	.	+	0	Parent=Os04t0461100-02
Chr04	irgsp1_rep	three_prime_UTR	23028787	23028940	.	+	.	Parent=Os04t0461100-02
Chr04	irgsp1_rep	mRNA	23040201	23048445	.	+	.	ID=Os04t0461300-01;Name=Os04t0461300-01;Locus_id=Os04g0461300;CGSNL Gene Symbol=MADS61;CGSNL Gene Name=MADS BOX GENE 61;Oryzabase Gene Symbol Synonym(s)=OsMADS61%2C MADS-27b;Oryzabase Gene Name Synonym(s)=MADS box gene61%2C MADS box gene 61%2C MADS-box transcription factor 61;Note=Similar to MIKC-type MADS-box transcription factor WM30.;Transcript_evidence=AK243669 (DDBJ%2C Best hit);ORF_evidence=A9J228 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box (IPR002100);NIAS_FLcDNA=J100089N11;Oryzabase=12296;TENOR=Os04t0461300-01;KEGG=Os04t0461300-01
Chr04	irgsp1_rep	five_prime_UTR	23040201	23040386	.	+	.	Parent=Os04t0461300-01
Chr04	irgsp1_rep	CDS	23040387	23040614	.	+	0	Parent=Os04t0461300-01
Chr04	irgsp1_rep	three_prime_UTR	23040615	23041378	.	+	.	Parent=Os04t0461300-01
Chr04	irgsp1_rep	three_prime_UTR	23046757	23046818	.	+	.	Parent=Os04t0461300-01
Chr04	irgsp1_rep	three_prime_UTR	23047549	23047648	.	+	.	Parent=Os04t0461300-01
Chr04	irgsp1_rep	three_prime_UTR	23047733	23047774	.	+	.	Parent=Os04t0461300-01
Chr04	irgsp1_rep	three_prime_UTR	23047851	23047934	.	+	.	Parent=Os04t0461300-01
Chr04	irgsp1_rep	three_prime_UTR	23048012	23048166	.	+	.	Parent=Os04t0461300-01
Chr04	irgsp1_rep	three_prime_UTR	23048254	23048445	.	+	.	Parent=Os04t0461300-01
Chr04	irgsp1_rep	mRNA	23045688	23056619	.	-	.	ID=Os04t0461400-01;Name=Os04t0461400-01;Locus_id=Os04g0461400;Note=Conserved hypothetical protein.;Transcript_evidence=AK066992 (DDBJ%2C Best hit);ORF_evidence=B8AUR3 (UniProt);NIAS_FLcDNA=J013089P17;Expression=AK066992;TENOR=Os04t0461400-01;KEGG=Os04t0461400-01
Chr04	irgsp1_rep	five_prime_UTR	23056520	23056619	.	-	.	Parent=Os04t0461400-01
Chr04	irgsp1_rep	CDS	23056437	23056519	.	-	0	Parent=Os04t0461400-01
Chr04	irgsp1_rep	CDS	23053595	23053652	.	-	1	Parent=Os04t0461400-01
Chr04	irgsp1_rep	CDS	23046634	23046834	.	-	0	Parent=Os04t0461400-01
Chr04	irgsp1_rep	three_prime_UTR	23045966	23046633	.	-	.	Parent=Os04t0461400-01
Chr04	irgsp1_rep	three_prime_UTR	23045688	23045894	.	-	.	Parent=Os04t0461400-01
Chr04	irgsp1_rep	mRNA	23045683	23048831	.	-	.	ID=Os04t0461400-02;Name=Os04t0461400-02;Locus_id=Os04g0461400;Note=Hypothetical gene.;Transcript_evidence=AK069265 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023012L05;Expression=AK069265;TENOR=Os04t0461400-02;KEGG=Os04t0461400-02
Chr04	irgsp1_rep	five_prime_UTR	23046886	23048831	.	-	.	Parent=Os04t0461400-02
Chr04	irgsp1_rep	CDS	23046634	23046885	.	-	0	Parent=Os04t0461400-02
Chr04	irgsp1_rep	three_prime_UTR	23045683	23046633	.	-	.	Parent=Os04t0461400-02
Chr04	irgsp1_rep	mRNA	23059610	23060936	.	-	.	ID=Os04t0461600-01;Name=Os04t0461600-01;Locus_id=Os04g0461600;Note=Similar to Fw2.2.;Transcript_evidence=AK072586 (DDBJ%2C Best hit);ORF_evidence=B6TYV8 (UniProt);InterPro=Uncharacterised protein family Cys-rich (IPR006461);NIAS_FLcDNA=J023132E12;Expression=AK072586;TENOR=Os04t0461600-01;KEGG=Os04t0461600-01
Chr04	irgsp1_rep	five_prime_UTR	23060935	23060936	.	-	.	Parent=Os04t0461600-01
Chr04	irgsp1_rep	CDS	23060760	23060934	.	-	0	Parent=Os04t0461600-01
Chr04	irgsp1_rep	CDS	23060605	23060676	.	-	2	Parent=Os04t0461600-01
Chr04	irgsp1_rep	CDS	23060269	23060481	.	-	2	Parent=Os04t0461600-01
Chr04	irgsp1_rep	CDS	23060054	23060133	.	-	2	Parent=Os04t0461600-01
Chr04	irgsp1_rep	three_prime_UTR	23059610	23060053	.	-	.	Parent=Os04t0461600-01
Chr04	irgsp1_rep	mRNA	23069418	23075447	.	-	.	ID=Os04t0461700-01;Name=Os04t0461700-01;Locus_id=Os04g0461700;Note=Non-protein coding transcript.;Transcript_evidence=AK100048 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013155A05;TENOR=Os04t0461700-01
Chr04	irgsp1_rep	exon	23075347	23075447	.	-	.	Parent=Os04t0461700-01
Chr04	irgsp1_rep	exon	23075187	23075257	.	-	.	Parent=Os04t0461700-01
Chr04	irgsp1_rep	exon	23069418	23071682	.	-	.	Parent=Os04t0461700-01
Chr04	irgsp1_rep	mRNA	23071185	23075399	.	-	.	ID=Os04t0461700-02;Name=Os04t0461700-02;Locus_id=Os04g0461700;Note=Non-protein coding transcript.;Transcript_evidence=AK120338 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013060K24;TENOR=Os04t0461700-02
Chr04	irgsp1_rep	exon	23075347	23075399	.	-	.	Parent=Os04t0461700-02
Chr04	irgsp1_rep	exon	23071185	23075257	.	-	.	Parent=Os04t0461700-02
Chr04	irgsp1_rep	mRNA	23076734	23077412	.	+	.	ID=Os04t0461750-00;Name=Os04t0461750-00;Locus_id=Os04g0461750;Note=Conserved hypothetical protein.;Transcript_evidence=EU971720 (DDBJ);ORF_evidence=Q6MWF0 (UniProt);TENOR=Os04t0461750-00
Chr04	irgsp1_rep	five_prime_UTR	23076734	23076866	.	+	.	Parent=Os04t0461750-00
Chr04	irgsp1_rep	CDS	23076867	23077412	.	+	0	Parent=Os04t0461750-00
Chr04	irgsp1_rep	mRNA	23078330	23081438	.	-	.	ID=Os04t0461800-01;Name=Os04t0461800-01;Locus_id=Os04g0461800;CGSNL Gene Symbol=DW2;CGSNL Gene Name=DEEP WATER TOLERANCE 2;Oryzabase Gene Symbol Synonym(s)=dw2(fh2)%2C dw2%2C fh2%2C FH2%2C OsFH2;Oryzabase Gene Name Synonym(s)=deep water tolerance2%2C deep water tolerance-2%2C Formin-like protein 2%2C formin homology 2%2C forming family protein 2%2C FH2 protein 2%2C FH2 domain protein 2;Note=Actin-binding FH2 domain containing protein.;Transcript_evidence=AK106770 (DDBJ%2C Best hit);ORF_evidence=Q7XUV2 (UniProt);GO=Biological Process: cellular component organization (GO:0016043),Biological Process: actin cytoskeleton organization (GO:0030036),Molecular Function: actin binding (GO:0003779);InterPro=Actin-binding FH2/DRF autoregulatory (IPR003104),Actin-binding FH2 (IPR015425);NIAS_FLcDNA=002-115-F08;Oryzabase=90;Expression=AK106770;TENOR=Os04t0461800-01;KEGG=Os04t0461800-01
Chr04	irgsp1_rep	five_prime_UTR	23081350	23081438	.	-	.	Parent=Os04t0461800-01
Chr04	irgsp1_rep	CDS	23079926	23081349	.	-	0	Parent=Os04t0461800-01
Chr04	irgsp1_rep	CDS	23079607	23079797	.	-	1	Parent=Os04t0461800-01
Chr04	irgsp1_rep	CDS	23079250	23079485	.	-	2	Parent=Os04t0461800-01
Chr04	irgsp1_rep	CDS	23078487	23079137	.	-	0	Parent=Os04t0461800-01
Chr04	irgsp1_rep	three_prime_UTR	23078330	23078486	.	-	.	Parent=Os04t0461800-01
Chr04	irgsp1_rep	mRNA	23083335	23085438	.	-	.	ID=Os04t0461900-01;Name=Os04t0461900-01;Locus_id=Os04g0461900;Note=Hypothetical protein.;Transcript_evidence=AK064527 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-111-G11;Expression=AK064527;TENOR=Os04t0461900-01;KEGG=Os04t0461900-01
Chr04	irgsp1_rep	five_prime_UTR	23085222	23085438	.	-	.	Parent=Os04t0461900-01
Chr04	irgsp1_rep	CDS	23084976	23085221	.	-	0	Parent=Os04t0461900-01
Chr04	irgsp1_rep	three_prime_UTR	23083335	23084975	.	-	.	Parent=Os04t0461900-01
Chr04	irgsp1_rep	mRNA	23093153	23094065	.	+	.	ID=Os04t0462200-01;Name=Os04t0462200-01;Locus_id=Os04g0462200;Oryzabase Gene Symbol Synonym(s)=OsLTPG11%2C OsLTPg11;Oryzabase Gene Name Synonym(s)=GPI-anchored non-specific lipid transfer protein 11%2C type G nsLTP 11%2C type G non-specific lipid transfer protein 11;Note=Bifunctional inhibitor/plant lipid transfer protein/seed storage domain containing protein.;Transcript_evidence=AK106790 (DDBJ%2C Best hit);ORF_evidence=A2XUA2 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=002-116-A06;Oryzabase=13497;Expression=AK106790;TENOR=Os04t0462200-01;KEGG=Os04t0462200-01
Chr04	irgsp1_rep	five_prime_UTR	23093153	23093223	.	+	.	Parent=Os04t0462200-01
Chr04	irgsp1_rep	CDS	23093224	23093584	.	+	0	Parent=Os04t0462200-01
Chr04	irgsp1_rep	CDS	23093732	23093973	.	+	2	Parent=Os04t0462200-01
Chr04	irgsp1_rep	three_prime_UTR	23093974	23094065	.	+	.	Parent=Os04t0462200-01
Chr04	irgsp1_rep	mRNA	23094153	23095938	.	-	.	ID=Os04t0462300-01;Name=Os04t0462300-01;Locus_id=Os04g0462300;Note=Conserved hypothetical protein.;Transcript_evidence=AK109651 (DDBJ%2C Best hit);ORF_evidence=B8AUR5 (UniProt);NIAS_FLcDNA=002-140-B01;Expression=AK109651;TENOR=Os04t0462300-01;KEGG=Os04t0462300-01
Chr04	irgsp1_rep	five_prime_UTR	23095902	23095938	.	-	.	Parent=Os04t0462300-01
Chr04	irgsp1_rep	CDS	23095560	23095901	.	-	0	Parent=Os04t0462300-01
Chr04	irgsp1_rep	CDS	23095068	23095161	.	-	0	Parent=Os04t0462300-01
Chr04	irgsp1_rep	CDS	23094933	23094970	.	-	2	Parent=Os04t0462300-01
Chr04	irgsp1_rep	CDS	23094703	23094838	.	-	0	Parent=Os04t0462300-01
Chr04	irgsp1_rep	CDS	23094207	23094619	.	-	2	Parent=Os04t0462300-01
Chr04	irgsp1_rep	three_prime_UTR	23094153	23094206	.	-	.	Parent=Os04t0462300-01
Chr04	irgsp1_rep	mRNA	23097997	23100389	.	-	.	ID=Os04t0462400-01;Name=Os04t0462400-01;Locus_id=Os04g0462400;Oryzabase Gene Symbol Synonym(s)=OsLHT9%2C LHT9%2C OsLHT4%2C LHT4;Oryzabase Gene Name Synonym(s)=lysine-histidine-like transporter 9%2C lysine and histidine transporter 4;Note=Similar to lysine/histidine transporter.;Transcript_evidence=AK243224 (DDBJ%2C Best hit);ORF_evidence=XP_002315954.1 (RefSeq);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=J100043O17;Oryzabase=18506;TENOR=Os04t0462400-01;KEGG=Os04t0462400-01
Chr04	irgsp1_rep	five_prime_UTR	23100369	23100389	.	-	.	Parent=Os04t0462400-01
Chr04	irgsp1_rep	CDS	23100342	23100368	.	-	0	Parent=Os04t0462400-01
Chr04	irgsp1_rep	CDS	23099985	23100118	.	-	0	Parent=Os04t0462400-01
Chr04	irgsp1_rep	CDS	23098976	23099889	.	-	1	Parent=Os04t0462400-01
Chr04	irgsp1_rep	CDS	23098787	23098878	.	-	2	Parent=Os04t0462400-01
Chr04	irgsp1_rep	CDS	23098609	23098677	.	-	0	Parent=Os04t0462400-01
Chr04	irgsp1_rep	CDS	23098371	23098469	.	-	0	Parent=Os04t0462400-01
Chr04	irgsp1_rep	three_prime_UTR	23097997	23098370	.	-	.	Parent=Os04t0462400-01
Chr04	irgsp1_rep	mRNA	23104041	23107558	.	+	.	ID=Os04t0462500-01;Name=Os04t0462500-01;Locus_id=Os04g0462500;CGSNL Gene Symbol=GF14B;CGSNL Gene Name=G-BOX FACTOR 14-3-3B PROTEIN;Oryzabase Gene Symbol Synonym(s)=GF14b%2C OsGF14b%2C 14-3-3b;Oryzabase Gene Name Synonym(s)=G-box factor 14-3-3b protein;Note=Similar to 14-3-3-like protein GF14-6.;Transcript_evidence=AK071311 (DDBJ%2C Best hit);ORF_evidence=Q7XTE8 (UniProt);GO=Molecular Function: protein domain specific binding (GO:0019904);InterPro=14-3-3 protein (IPR000308),14-3-3 protein%2C conserved site (IPR023409),14-3-3 domain (IPR023410);NIAS_FLcDNA=J023085B16;Oryzabase=11409;Expression=AK071311;TENOR=Os04t0462500-01;KEGG=Os04t0462500-01
Chr04	irgsp1_rep	five_prime_UTR	23104041	23104091	.	+	.	Parent=Os04t0462500-01
Chr04	irgsp1_rep	five_prime_UTR	23104814	23104854	.	+	.	Parent=Os04t0462500-01
Chr04	irgsp1_rep	CDS	23104855	23105264	.	+	0	Parent=Os04t0462500-01
Chr04	irgsp1_rep	CDS	23105345	23105423	.	+	1	Parent=Os04t0462500-01
Chr04	irgsp1_rep	CDS	23105543	23105665	.	+	0	Parent=Os04t0462500-01
Chr04	irgsp1_rep	CDS	23106994	23107110	.	+	0	Parent=Os04t0462500-01
Chr04	irgsp1_rep	CDS	23107225	23107284	.	+	0	Parent=Os04t0462500-01
Chr04	irgsp1_rep	three_prime_UTR	23107285	23107558	.	+	.	Parent=Os04t0462500-01
Chr04	irgsp1_rep	mRNA	23104044	23107558	.	+	.	ID=Os04t0462500-02;Name=Os04t0462500-02;Locus_id=Os04g0462500;RAP-DB Gene Symbol Synonym(s)=GF14B%2C GF14b%2C OsGF14b;RAP-DB Gene Name Synonym(s)=G-BOX FACTOR 14-3-3B PROTEIN%2C G-box factor 14-3-3b protein;CGSNL Gene Symbol=GF14B;CGSNL Gene Name=G-BOX FACTOR 14-3-3B PROTEIN;Oryzabase Gene Symbol Synonym(s)=GF14b%2C OsGF14b%2C 14-3-3b;Oryzabase Gene Name Synonym(s)=G-box factor 14-3-3b protein;Note=14-3-3 protein%2C Florigen receptor%2C Flowering;Transcript_evidence=AK071822;ORF_evidence=Q7XTE8;GO=Molecular Function: protein domain specific binding (GO:0019904);InterPro=14-3-3 protein (IPR000308),14-3-3 domain (IPR023410),14-3-3 protein%2C conserved site (IPR023409);NIAS_FLcDNA=J023117D08;Manual Curation=December 2%2C 2014;Literature_PMID=21804566;Oryzabase=11409;Expression=AK071822;TENOR=Os04t0462500-02;KEGG=Os04t0462500-02
Chr04	irgsp1_rep	five_prime_UTR	23104044	23104854	.	+	.	Parent=Os04t0462500-02
Chr04	irgsp1_rep	CDS	23104855	23105264	.	+	0	Parent=Os04t0462500-02
Chr04	irgsp1_rep	CDS	23105345	23105423	.	+	1	Parent=Os04t0462500-02
Chr04	irgsp1_rep	CDS	23105543	23105665	.	+	0	Parent=Os04t0462500-02
Chr04	irgsp1_rep	CDS	23106994	23107110	.	+	0	Parent=Os04t0462500-02
Chr04	irgsp1_rep	CDS	23107225	23107284	.	+	0	Parent=Os04t0462500-02
Chr04	irgsp1_rep	three_prime_UTR	23107285	23107558	.	+	.	Parent=Os04t0462500-02
Chr04	irgsp1_rep	mRNA	23104089	23107558	.	+	.	ID=Os04t0462500-03;Name=Os04t0462500-03;Locus_id=Os04g0462500;CGSNL Gene Symbol=GF14B;CGSNL Gene Name=G-BOX FACTOR 14-3-3B PROTEIN;Oryzabase Gene Symbol Synonym(s)=GF14b%2C OsGF14b%2C 14-3-3b;Oryzabase Gene Name Synonym(s)=G-box factor 14-3-3b protein;Note=Similar to 14-3-3-like protein GF14-6.;Transcript_evidence=AK099243 (DDBJ%2C Best hit);ORF_evidence=Q7XTE8 (UniProt);GO=Molecular Function: protein domain specific binding (GO:0019904);InterPro=14-3-3 protein (IPR000308),14-3-3 protein%2C conserved site (IPR023409),14-3-3 domain (IPR023410);NIAS_FLcDNA=J013116M06;Oryzabase=11409;Expression=AK099243;TENOR=Os04t0462500-03;KEGG=Os04t0462500-03
Chr04	irgsp1_rep	five_prime_UTR	23104089	23104854	.	+	.	Parent=Os04t0462500-03
Chr04	irgsp1_rep	CDS	23104855	23105264	.	+	0	Parent=Os04t0462500-03
Chr04	irgsp1_rep	CDS	23105345	23105423	.	+	1	Parent=Os04t0462500-03
Chr04	irgsp1_rep	CDS	23105543	23105665	.	+	0	Parent=Os04t0462500-03
Chr04	irgsp1_rep	CDS	23106994	23107110	.	+	0	Parent=Os04t0462500-03
Chr04	irgsp1_rep	CDS	23107225	23107284	.	+	0	Parent=Os04t0462500-03
Chr04	irgsp1_rep	three_prime_UTR	23107285	23107558	.	+	.	Parent=Os04t0462500-03
Chr04	irgsp1_rep	mRNA	23104448	23107581	.	+	.	ID=Os04t0462500-04;Name=Os04t0462500-04;Locus_id=Os04g0462500;CGSNL Gene Symbol=GF14B;CGSNL Gene Name=G-BOX FACTOR 14-3-3B PROTEIN;Oryzabase Gene Symbol Synonym(s)=GF14b%2C OsGF14b%2C 14-3-3b;Oryzabase Gene Name Synonym(s)=G-box factor 14-3-3b protein;Note=Similar to 14-3-3-like protein GF14-6.;Transcript_evidence=AK101938 (DDBJ%2C Best hit);ORF_evidence=Q7XTE8 (UniProt);GO=Molecular Function: protein domain specific binding (GO:0019904);InterPro=14-3-3 protein (IPR000308),14-3-3 protein%2C conserved site (IPR023409),14-3-3 domain (IPR023410);NIAS_FLcDNA=J033074G16;Oryzabase=11409;Expression=AK101938;TENOR=Os04t0462500-04;KEGG=Os04t0462500-04
Chr04	irgsp1_rep	five_prime_UTR	23104448	23104854	.	+	.	Parent=Os04t0462500-04
Chr04	irgsp1_rep	CDS	23104855	23105264	.	+	0	Parent=Os04t0462500-04
Chr04	irgsp1_rep	CDS	23105345	23105423	.	+	1	Parent=Os04t0462500-04
Chr04	irgsp1_rep	CDS	23105543	23105665	.	+	0	Parent=Os04t0462500-04
Chr04	irgsp1_rep	CDS	23106994	23107110	.	+	0	Parent=Os04t0462500-04
Chr04	irgsp1_rep	CDS	23107225	23107284	.	+	0	Parent=Os04t0462500-04
Chr04	irgsp1_rep	three_prime_UTR	23107285	23107581	.	+	.	Parent=Os04t0462500-04
Chr04	irgsp1_rep	mRNA	23104823	23107570	.	+	.	ID=Os04t0462500-05;Name=Os04t0462500-05;Locus_id=Os04g0462500;CGSNL Gene Symbol=GF14B;CGSNL Gene Name=G-BOX FACTOR 14-3-3B PROTEIN;Oryzabase Gene Symbol Synonym(s)=GF14b%2C OsGF14b%2C 14-3-3b;Oryzabase Gene Name Synonym(s)=G-box factor 14-3-3b protein;Note=Similar to 14-3-3-like protein GF14-6.;Transcript_evidence=AK062065 (DDBJ%2C Best hit);ORF_evidence=Q7XTE8 (UniProt);GO=Molecular Function: protein domain specific binding (GO:0019904);InterPro=14-3-3 protein (IPR000308),14-3-3 protein%2C conserved site (IPR023409),14-3-3 domain (IPR023410);NIAS_FLcDNA=001-044-D04;Oryzabase=11409;Expression=AK062065;TENOR=Os04t0462500-05;KEGG=Os04t0462500-05
Chr04	irgsp1_rep	five_prime_UTR	23104823	23104854	.	+	.	Parent=Os04t0462500-05
Chr04	irgsp1_rep	CDS	23104855	23105264	.	+	0	Parent=Os04t0462500-05
Chr04	irgsp1_rep	CDS	23105345	23105423	.	+	1	Parent=Os04t0462500-05
Chr04	irgsp1_rep	CDS	23105543	23105665	.	+	0	Parent=Os04t0462500-05
Chr04	irgsp1_rep	CDS	23106994	23107110	.	+	0	Parent=Os04t0462500-05
Chr04	irgsp1_rep	CDS	23107225	23107284	.	+	0	Parent=Os04t0462500-05
Chr04	irgsp1_rep	three_prime_UTR	23107285	23107570	.	+	.	Parent=Os04t0462500-05
Chr04	irgsp1_rep	mRNA	23104860	23107358	.	-	.	ID=Os04t0462550-00;Name=Os04t0462550-00;Locus_id=Os04g0462550;Note=Hypothetical gene.;Transcript_evidence=BT017754 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0462550-00;KEGG=Os04t0462550-00
Chr04	irgsp1_rep	five_prime_UTR	23107203	23107358	.	-	.	Parent=Os04t0462550-00
Chr04	irgsp1_rep	five_prime_UTR	23106982	23107089	.	-	.	Parent=Os04t0462550-00
Chr04	irgsp1_rep	five_prime_UTR	23105576	23105653	.	-	.	Parent=Os04t0462550-00
Chr04	irgsp1_rep	CDS	23105529	23105575	.	-	0	Parent=Os04t0462550-00
Chr04	irgsp1_rep	CDS	23105343	23105415	.	-	1	Parent=Os04t0462550-00
Chr04	irgsp1_rep	CDS	23105050	23105262	.	-	0	Parent=Os04t0462550-00
Chr04	irgsp1_rep	three_prime_UTR	23104860	23105049	.	-	.	Parent=Os04t0462550-00
Chr04	irgsp1_rep	mRNA	23108129	23110654	.	-	.	ID=Os04t0462600-01;Name=Os04t0462600-01;Locus_id=Os04g0462600;Note=Dynein light chain%2C type 1 family protein.;Transcript_evidence=AK111125 (DDBJ%2C Best hit);ORF_evidence=NP_001152199.1 (RefSeq);GO=Biological Process: microtubule-based process (GO:0007017),Cellular Component: microtubule associated complex (GO:0005875);InterPro=Dynein light chain%2C type 1/2 (IPR001372);NIAS_FLcDNA=002-176-C06;Expression=AK111125;TENOR=Os04t0462600-01;KEGG=Os04t0462600-01
Chr04	irgsp1_rep	five_prime_UTR	23110468	23110654	.	-	.	Parent=Os04t0462600-01
Chr04	irgsp1_rep	CDS	23110057	23110467	.	-	0	Parent=Os04t0462600-01
Chr04	irgsp1_rep	CDS	23108389	23108550	.	-	0	Parent=Os04t0462600-01
Chr04	irgsp1_rep	three_prime_UTR	23108129	23108388	.	-	.	Parent=Os04t0462600-01
Chr04	irgsp1_rep	mRNA	23111203	23111701	.	+	.	ID=Os04t0462700-01;Name=Os04t0462700-01;Locus_id=Os04g0462700;Note=Non-protein coding transcript.;Transcript_evidence=AK105319 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-117-F12;TENOR=Os04t0462700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	exon	23111203	23111701	.	+	.	Parent=Os04t0462700-01
Chr04	irgsp1_rep	mRNA	23111052	23111847	.	-	.	ID=Os04t0462800-00;Name=Os04t0462800-00;Locus_id=Os04g0462800;Note=Hypothetical conserved gene.;Transcript_evidence=CT828169 (DDBJ%2C Best hit);ORF_evidence=B8BI90 (UniProt);TENOR=Os04t0462800-00;KEGG=Os04t0462800-00
Chr04	irgsp1_rep	five_prime_UTR	23111761	23111847	.	-	.	Parent=Os04t0462800-00
Chr04	irgsp1_rep	CDS	23111461	23111760	.	-	0	Parent=Os04t0462800-00
Chr04	irgsp1_rep	three_prime_UTR	23111052	23111460	.	-	.	Parent=Os04t0462800-00
Chr04	irgsp1_rep	mRNA	23116739	23117957	.	-	.	ID=Os04t0462900-01;Name=Os04t0462900-01;Locus_id=Os04g0462900;Note=Similar to prohibitin2.;Transcript_evidence=AK058481 (DDBJ%2C Best hit),AK099100 (DDBJ%2C Best hit),AK102579 (DDBJ%2C Best hit);ORF_evidence=NP_001104967.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Prohibitin (IPR000163),Band 7 protein (IPR001107);NIAS_FLcDNA=001-016-D03,J023023M22,J033098B02;TENOR=Os04t0462900-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	23117816	23117957	.	-	.	Parent=Os04t0462900-01
Chr04	irgsp1_rep	CDS	23116952	23117815	.	-	0	Parent=Os04t0462900-01
Chr04	irgsp1_rep	three_prime_UTR	23116739	23116951	.	-	.	Parent=Os04t0462900-01
Chr04	irgsp1_rep	mRNA	23116120	23117936	.	-	.	ID=Os04t0462900-02;Name=Os04t0462900-02;Locus_id=Os04g0462900;Note=Similar to Prohibitin.;Transcript_evidence=AK106322 (DDBJ%2C Best hit);ORF_evidence=B6TP36 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Prohibitin (IPR000163),Band 7 protein (IPR001107);NIAS_FLcDNA=002-101-E09;TENOR=Os04t0462900-02;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	23117816	23117936	.	-	.	Parent=Os04t0462900-02
Chr04	irgsp1_rep	CDS	23116965	23117815	.	-	0	Parent=Os04t0462900-02
Chr04	irgsp1_rep	CDS	23116632	23116671	.	-	1	Parent=Os04t0462900-02
Chr04	irgsp1_rep	three_prime_UTR	23116120	23116631	.	-	.	Parent=Os04t0462900-02
Chr04	irgsp1_rep	mRNA	23116705	23117883	.	-	.	ID=Os04t0462900-05;Name=Os04t0462900-05;Locus_id=Os04g0462900;Note=Similar to prohibitin2.;Transcript_evidence=AK061324 (DDBJ%2C Best hit);ORF_evidence=NP_001104967.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Prohibitin (IPR000163),Band 7 protein (IPR001107);NIAS_FLcDNA=006-302-G03;TENOR=Os04t0462900-05;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	23117816	23117883	.	-	.	Parent=Os04t0462900-05
Chr04	irgsp1_rep	CDS	23116952	23117815	.	-	0	Parent=Os04t0462900-05
Chr04	irgsp1_rep	three_prime_UTR	23116705	23116951	.	-	.	Parent=Os04t0462900-05
Chr04	irgsp1_rep	mRNA	23116765	23117443	.	-	.	ID=Os04t0462900-06;Name=Os04t0462900-06;Locus_id=Os04g0462900;Note=Similar to prohibitin2.;Transcript_evidence=AK059483 (DDBJ%2C Best hit);ORF_evidence=NP_001104967.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Prohibitin (IPR000163),Band 7 protein (IPR001107);NIAS_FLcDNA=001-028-F08;Expression=AK059483;TENOR=Os04t0462900-06;KEGG=Os04t0462900-06
Chr04	irgsp1_rep	CDS	23116952	23117443	.	-	0	Parent=Os04t0462900-06
Chr04	irgsp1_rep	three_prime_UTR	23116765	23116951	.	-	.	Parent=Os04t0462900-06
Chr04	irgsp1_rep	mRNA	23120224	23122721	.	-	.	ID=Os04t0463000-01;Name=Os04t0463000-01;Locus_id=Os04g0463000;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK120857 (DDBJ%2C Best hit);ORF_evidence=Q25A94 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023024D23;Expression=AK120857;TENOR=Os04t0463000-01;KEGG=Os04t0463000-01
Chr04	irgsp1_rep	five_prime_UTR	23122614	23122721	.	-	.	Parent=Os04t0463000-01
Chr04	irgsp1_rep	CDS	23121263	23122613	.	-	0	Parent=Os04t0463000-01
Chr04	irgsp1_rep	CDS	23120520	23121178	.	-	2	Parent=Os04t0463000-01
Chr04	irgsp1_rep	three_prime_UTR	23120224	23120519	.	-	.	Parent=Os04t0463000-01
Chr04	irgsp1_rep	mRNA	23125252	23126013	.	-	.	ID=Os04t0463100-01;Name=Os04t0463100-01;Locus_id=Os04g0463100;Note=Conserved hypothetical protein.;Transcript_evidence=AK111314 (DDBJ%2C Best hit);ORF_evidence=NP_001173688.1 (RefSeq);NIAS_FLcDNA=002-181-C07;TENOR=Os04t0463100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	23125686	23126013	.	-	.	Parent=Os04t0463100-01
Chr04	irgsp1_rep	five_prime_UTR	23125536	23125572	.	-	.	Parent=Os04t0463100-01
Chr04	irgsp1_rep	CDS	23125293	23125535	.	-	0	Parent=Os04t0463100-01
Chr04	irgsp1_rep	three_prime_UTR	23125252	23125292	.	-	.	Parent=Os04t0463100-01
Chr04	irgsp1_rep	mRNA	23128561	23129948	.	+	.	ID=Os04t0463200-01;Name=Os04t0463200-01;Locus_id=Os04g0463200;Note=Protein of unknown function DUF593 family protein.;Transcript_evidence=AK243661 (DDBJ%2C Best hit);ORF_evidence=NP_001053008.1 (RefSeq);InterPro=Protein of unknown function DUF593 (IPR007656);NIAS_FLcDNA=J100089E21;TENOR=Os04t0463200-01;KEGG=Os04t0463200-01
Chr04	irgsp1_rep	five_prime_UTR	23128561	23128744	.	+	.	Parent=Os04t0463200-01
Chr04	irgsp1_rep	CDS	23128745	23129656	.	+	0	Parent=Os04t0463200-01
Chr04	irgsp1_rep	three_prime_UTR	23129657	23129948	.	+	.	Parent=Os04t0463200-01
Chr04	irgsp1_rep	mRNA	23133289	23137358	.	+	.	ID=Os04t0463300-01;Name=Os04t0463300-01;Locus_id=Os04g0463300;Note=Pentatricopeptide repeat containing protein.;Transcript_evidence=AK119417 (DDBJ%2C Best hit);ORF_evidence=Q6MWD7 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=001-132-G06;Expression=AK119417;TENOR=Os04t0463300-01;KEGG=Os04t0463300-01
Chr04	irgsp1_rep	five_prime_UTR	23133289	23133289	.	+	.	Parent=Os04t0463300-01
Chr04	irgsp1_rep	CDS	23133290	23133502	.	+	0	Parent=Os04t0463300-01
Chr04	irgsp1_rep	three_prime_UTR	23133503	23133933	.	+	.	Parent=Os04t0463300-01
Chr04	irgsp1_rep	three_prime_UTR	23134361	23134737	.	+	.	Parent=Os04t0463300-01
Chr04	irgsp1_rep	three_prime_UTR	23134838	23135340	.	+	.	Parent=Os04t0463300-01
Chr04	irgsp1_rep	three_prime_UTR	23135575	23136582	.	+	.	Parent=Os04t0463300-01
Chr04	irgsp1_rep	three_prime_UTR	23136673	23137358	.	+	.	Parent=Os04t0463300-01
Chr04	irgsp1_rep	mRNA	23134256	23137105	.	-	.	ID=Os04t0463400-01;Name=Os04t0463400-01;Locus_id=Os04g0463400;RAP-DB Gene Symbol Synonym(s)=OsVIT1%3B2 OsVIT1;RAP-DB Gene Name Synonym(s)=vacuolar iron influxer VIT1%3B2%2C Vacuolar Iron Transporter 1;Oryzabase Gene Symbol Synonym(s)=OsVIT1%3B2%2C OsVIT1;Oryzabase Gene Name Synonym(s)=vacuolar iron influxer VIT1%3B2%2C Vacuolar Iron Transporter 1;Note=Vacuolar membrane transporter%2C Fe and Zn translocation between flag leaves and seeds;Transcript_evidence=AK059730;ORF_evidence=Q6MWE5;InterPro=Ccc1 family (IPR008217);NIAS_FLcDNA=006-201-F09;Manual Curation=March 5%2C 2015;Literature_PMID=22731699;Oryzabase=11137;Expression=AK059730;TENOR=Os04t0463400-01;KEGG=Os04t0463400-01
Chr04	irgsp1_rep	five_prime_UTR	23137003	23137105	.	-	.	Parent=Os04t0463400-01
Chr04	irgsp1_rep	CDS	23136746	23137002	.	-	0	Parent=Os04t0463400-01
Chr04	irgsp1_rep	CDS	23135233	23135318	.	-	1	Parent=Os04t0463400-01
Chr04	irgsp1_rep	CDS	23134986	23135100	.	-	2	Parent=Os04t0463400-01
Chr04	irgsp1_rep	CDS	23134420	23134720	.	-	1	Parent=Os04t0463400-01
Chr04	irgsp1_rep	three_prime_UTR	23134256	23134419	.	-	.	Parent=Os04t0463400-01
Chr04	irgsp1_rep	mRNA	23139191	23142817	.	-	.	ID=Os04t0463500-01;Name=Os04t0463500-01;Locus_id=Os04g0463500;CGSNL Gene Symbol=TDD1;CGSNL Gene Name=TRYPTOPHAN DEFICIENT DWARF 1;Oryzabase Gene Symbol Synonym(s)=ASB1%2C OASB1%2C OsASbeta1%2C ASbeta1%2C TDD1/OASB1;Oryzabase Gene Name Synonym(s)=anthranilate synthase beta subunit 1%2C Anthranilate synthase beta 1 subunit%2C tryptophan deficient dwarf;Note=Similar to Anthranilate synthase beta chain.;Transcript_evidence=AK107879 (DDBJ%2C Best hit);ORF_evidence=B6TJE4 (UniProt);GO=Biological Process: glutamine metabolic process (GO:0006541),Biological Process: metabolic process (GO:0008152),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824);InterPro=Carbamoyl-phosphate synthase%2C GATase domain (IPR001317),Anthranilate synthase component II/delta crystallin (IPR006220),Anthranilate synthase%2C glutamine amidotransferase (IPR006221),Glutamine amidotransferase superfamily (IPR011702),Glutamine amidotransferase type 1 (IPR017926);NIAS_FLcDNA=002-134-D04;Oryzabase=11874;Expression=AK107879;TENOR=Os04t0463500-01;KEGG=Os04t0463500-01 (EC:4.1.3.27)
Chr04	irgsp1_rep	five_prime_UTR	23142738	23142817	.	-	.	Parent=Os04t0463500-01
Chr04	irgsp1_rep	CDS	23142620	23142737	.	-	0	Parent=Os04t0463500-01
Chr04	irgsp1_rep	CDS	23142346	23142524	.	-	2	Parent=Os04t0463500-01
Chr04	irgsp1_rep	CDS	23140707	23140777	.	-	0	Parent=Os04t0463500-01
Chr04	irgsp1_rep	CDS	23140545	23140582	.	-	1	Parent=Os04t0463500-01
Chr04	irgsp1_rep	CDS	23140351	23140461	.	-	2	Parent=Os04t0463500-01
Chr04	irgsp1_rep	CDS	23140161	23140260	.	-	2	Parent=Os04t0463500-01
Chr04	irgsp1_rep	CDS	23139563	23139698	.	-	1	Parent=Os04t0463500-01
Chr04	irgsp1_rep	CDS	23139348	23139461	.	-	0	Parent=Os04t0463500-01
Chr04	irgsp1_rep	three_prime_UTR	23139191	23139347	.	-	.	Parent=Os04t0463500-01
Chr04	irgsp1_rep	mRNA	23145069	23147396	.	+	.	ID=Os04t0463600-01;Name=Os04t0463600-01;Locus_id=Os04g0463600;Note=Myb/SANT-like domain domain containing protein.;Transcript_evidence=AK067018 (DDBJ%2C Best hit);ORF_evidence=B9FFK5 (UniProt);InterPro=Myb/SANT-like domain (IPR024752);NIAS_FLcDNA=J013091D20;TENOR=Os04t0463600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	23145069	23145382	.	+	.	Parent=Os04t0463600-01
Chr04	irgsp1_rep	CDS	23145383	23145454	.	+	0	Parent=Os04t0463600-01
Chr04	irgsp1_rep	CDS	23145918	23146232	.	+	0	Parent=Os04t0463600-01
Chr04	irgsp1_rep	CDS	23146311	23146383	.	+	0	Parent=Os04t0463600-01
Chr04	irgsp1_rep	CDS	23146473	23147101	.	+	2	Parent=Os04t0463600-01
Chr04	irgsp1_rep	three_prime_UTR	23147102	23147396	.	+	.	Parent=Os04t0463600-01
Chr04	irgsp1_rep	mRNA	23149875	23151738	.	-	.	ID=Os04t0463700-01;Name=Os04t0463700-01;Locus_id=Os04g0463700;Note=Similar to ADL064Wp.;Transcript_evidence=AK064338 (DDBJ%2C Best hit),AK102269 (DDBJ%2C Best hit);ORF_evidence=B8AV55 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=002-107-G12,J033088P15;Expression=AK064338;TENOR=Os04t0463700-01;KEGG=Os04t0463700-01
Chr04	irgsp1_rep	five_prime_UTR	23151558	23151738	.	-	.	Parent=Os04t0463700-01
Chr04	irgsp1_rep	CDS	23151498	23151557	.	-	0	Parent=Os04t0463700-01
Chr04	irgsp1_rep	CDS	23151314	23151383	.	-	0	Parent=Os04t0463700-01
Chr04	irgsp1_rep	CDS	23150187	23151040	.	-	2	Parent=Os04t0463700-01
Chr04	irgsp1_rep	three_prime_UTR	23149875	23150186	.	-	.	Parent=Os04t0463700-01
Chr04	irgsp1_rep	mRNA	23148230	23151738	.	-	.	ID=Os04t0463700-02;Name=Os04t0463700-02;Locus_id=Os04g0463700;Note=Similar to ADL064Wp.;Transcript_evidence=AK068918 (DDBJ%2C Best hit);ORF_evidence=B8AV55 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J013169C17;Expression=AK068918;TENOR=Os04t0463700-02;KEGG=Os04t0463700-02
Chr04	irgsp1_rep	five_prime_UTR	23151558	23151738	.	-	.	Parent=Os04t0463700-02
Chr04	irgsp1_rep	CDS	23151498	23151557	.	-	0	Parent=Os04t0463700-02
Chr04	irgsp1_rep	CDS	23151314	23151383	.	-	0	Parent=Os04t0463700-02
Chr04	irgsp1_rep	CDS	23150187	23151040	.	-	2	Parent=Os04t0463700-02
Chr04	irgsp1_rep	three_prime_UTR	23149351	23150186	.	-	.	Parent=Os04t0463700-02
Chr04	irgsp1_rep	three_prime_UTR	23148230	23148491	.	-	.	Parent=Os04t0463700-02
Chr04	irgsp1_rep	mRNA	23153453	23158544	.	-	.	ID=Os04t0463800-01;Name=Os04t0463800-01;Locus_id=Os04g0463800;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK100348 (DDBJ%2C Best hit);ORF_evidence=Q6MWE3 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J023082M18;Expression=AK100348;TENOR=Os04t0463800-01;KEGG=Os04t0463800-01
Chr04	irgsp1_rep	five_prime_UTR	23158504	23158544	.	-	.	Parent=Os04t0463800-01
Chr04	irgsp1_rep	CDS	23156200	23158503	.	-	0	Parent=Os04t0463800-01
Chr04	irgsp1_rep	three_prime_UTR	23155522	23156199	.	-	.	Parent=Os04t0463800-01
Chr04	irgsp1_rep	three_prime_UTR	23155349	23155390	.	-	.	Parent=Os04t0463800-01
Chr04	irgsp1_rep	three_prime_UTR	23155071	23155241	.	-	.	Parent=Os04t0463800-01
Chr04	irgsp1_rep	three_prime_UTR	23154054	23154335	.	-	.	Parent=Os04t0463800-01
Chr04	irgsp1_rep	three_prime_UTR	23153453	23153946	.	-	.	Parent=Os04t0463800-01
Chr04	irgsp1_rep	mRNA	23159815	23160093	.	+	.	ID=Os04t0463900-00;Name=Os04t0463900-00;Locus_id=Os04g0463900;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FFK8 (UniProt);TENOR=Os04t0463900-00
Chr04	irgsp1_rep	CDS	23159815	23160093	.	+	0	Parent=Os04t0463900-00
Chr04	irgsp1_rep	mRNA	23165556	23166329	.	+	.	ID=Os04t0464100-01;Name=Os04t0464100-01;Locus_id=Os04g0464100;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK120542 (DDBJ%2C Best hit);ORF_evidence=Q01IL4 (UniProt);NIAS_FLcDNA=J013129I02;Expression=AK120542;TENOR=Os04t0464100-01;KEGG=Os04t0464100-01
Chr04	irgsp1_rep	five_prime_UTR	23165556	23165800	.	+	.	Parent=Os04t0464100-01
Chr04	irgsp1_rep	CDS	23165801	23166157	.	+	0	Parent=Os04t0464100-01
Chr04	irgsp1_rep	three_prime_UTR	23166158	23166329	.	+	.	Parent=Os04t0464100-01
Chr04	irgsp1_rep	mRNA	23171516	23176332	.	-	.	ID=Os04t0464200-01;Name=Os04t0464200-01;Locus_id=Os04g0464200;RAP-DB Gene Symbol Synonym(s)=BAD1%2C Badh1%2C badh1%2C BAD1%2C BADH1%2C OsBADH1%2C BADH;RAP-DB Gene Name Synonym(s)=BETAINE ALDEHYDE DEHYDROGENASE 1%2C betaine aldehyde dehydrogenase 1;CGSNL Gene Symbol=BAD1;CGSNL Gene Name=BETAINE ALDEHYDE DEHYDROGENASE 1;Oryzabase Gene Symbol Synonym(s)=Badh1%2C badh1%2C BAD1%2C BADH1%2C OsBADH1%2C BADH%2C OsALDH10A5%2C ALDH10A5;Oryzabase Gene Name Synonym(s)=betaine aldehyde dehydrogenase 1%2C Aldehyde dehydrogenase 10A5;Note=Betaine aldehyde dehydrogenase%2C Rice fragrance%2C Salt stress;Transcript_evidence=AK103582 (Genbank);ORF_evidence=O24174 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620);InterPro=Aldehyde dehydrogenase domain (IPR015590),Aldehyde dehydrogenase%2C conserved site (IPR016160),Aldehyde/histidinol dehydrogenase (IPR016161),Aldehyde dehydrogenase%2C N-terminal (IPR016162),Aldehyde dehydrogenase%2C C-terminal (IPR016163);NIAS_FLcDNA=J033133A13;Manual Curation=July 14%2C 2009;Literature_PMID=9193078,17129318;Oryzabase=8197;Expression=AK103582;TENOR=Os04t0464200-01;KEGG=Os04t0464200-01 (EC:1.2.1.3%2C EC:1.2.1.8)
Chr04	irgsp1_rep	five_prime_UTR	23176221	23176332	.	-	.	Parent=Os04t0464200-01
Chr04	irgsp1_rep	CDS	23176106	23176220	.	-	0	Parent=Os04t0464200-01
Chr04	irgsp1_rep	CDS	23175850	23175992	.	-	2	Parent=Os04t0464200-01
Chr04	irgsp1_rep	CDS	23175029	23175109	.	-	0	Parent=Os04t0464200-01
Chr04	irgsp1_rep	CDS	23174794	23174942	.	-	0	Parent=Os04t0464200-01
Chr04	irgsp1_rep	CDS	23174081	23174173	.	-	1	Parent=Os04t0464200-01
Chr04	irgsp1_rep	CDS	23173876	23173999	.	-	1	Parent=Os04t0464200-01
Chr04	irgsp1_rep	CDS	23173689	23173754	.	-	0	Parent=Os04t0464200-01
Chr04	irgsp1_rep	CDS	23173476	23173542	.	-	0	Parent=Os04t0464200-01
Chr04	irgsp1_rep	CDS	23173228	23173304	.	-	2	Parent=Os04t0464200-01
Chr04	irgsp1_rep	CDS	23173044	23173157	.	-	0	Parent=Os04t0464200-01
Chr04	irgsp1_rep	CDS	23172654	23172731	.	-	0	Parent=Os04t0464200-01
Chr04	irgsp1_rep	CDS	23172418	23172569	.	-	0	Parent=Os04t0464200-01
Chr04	irgsp1_rep	CDS	23172281	23172341	.	-	1	Parent=Os04t0464200-01
Chr04	irgsp1_rep	CDS	23172037	23172143	.	-	0	Parent=Os04t0464200-01
Chr04	irgsp1_rep	CDS	23171793	23171883	.	-	1	Parent=Os04t0464200-01
Chr04	irgsp1_rep	three_prime_UTR	23171516	23171792	.	-	.	Parent=Os04t0464200-01
Chr04	irgsp1_rep	mRNA	23178597	23179635	.	+	.	ID=Os04t0464300-01;Name=Os04t0464300-01;Locus_id=Os04g0464300;Note=Hypothetical protein.;Transcript_evidence=AK111143 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-176-E04;Expression=AK111143;TENOR=Os04t0464300-01;KEGG=Os04t0464300-01
Chr04	irgsp1_rep	five_prime_UTR	23178597	23178926	.	+	.	Parent=Os04t0464300-01
Chr04	irgsp1_rep	CDS	23178927	23179391	.	+	0	Parent=Os04t0464300-01
Chr04	irgsp1_rep	three_prime_UTR	23179392	23179635	.	+	.	Parent=Os04t0464300-01
Chr04	irgsp1_rep	mRNA	23178600	23182740	.	-	.	ID=Os04t0464400-00;Name=Os04t0464400-00;Locus_id=Os04g0464400;CGSNL Gene Symbol=NRT1.3B;CGSNL Gene Name=NITRATE TRANSPORTER 1.3B;Oryzabase Gene Symbol Synonym(s)=OsNRT1.3B;Oryzabase Gene Name Synonym(s)=nitrate transporter 1.3B;Note=Similar to peptide transporter PTR2.;Transcript_evidence=AK334364 (DDBJ);ORF_evidence=NP_001147955.1 (RefSeq);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),PTR2 family proton/oligopeptide symporter%2C conserved site (IPR018456);Oryzabase=19900;TENOR=Os04t0464400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	23182632	23182740	.	-	0	Parent=Os04t0464400-00
Chr04	irgsp1_rep	CDS	23182235	23182452	.	-	2	Parent=Os04t0464400-00
Chr04	irgsp1_rep	CDS	23181543	23182167	.	-	0	Parent=Os04t0464400-00
Chr04	irgsp1_rep	CDS	23178600	23179519	.	-	2	Parent=Os04t0464400-00
Chr04	irgsp1_rep	mRNA	23185943	23190787	.	+	.	ID=Os04t0464500-01;Name=Os04t0464500-01;Locus_id=Os04g0464500;Note=SEP domain containing protein.;Transcript_evidence=AK069067 (DDBJ%2C Best hit);ORF_evidence=NP_001149733.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=UBX (IPR001012),SEP domain (IPR012989);NIAS_FLcDNA=J023008O13;Expression=AK069067;TENOR=Os04t0464500-01;KEGG=Os04t0464500-01
Chr04	irgsp1_rep	five_prime_UTR	23185943	23186028	.	+	.	Parent=Os04t0464500-01
Chr04	irgsp1_rep	CDS	23186029	23186210	.	+	0	Parent=Os04t0464500-01
Chr04	irgsp1_rep	CDS	23188493	23188781	.	+	1	Parent=Os04t0464500-01
Chr04	irgsp1_rep	CDS	23189922	23190017	.	+	0	Parent=Os04t0464500-01
Chr04	irgsp1_rep	CDS	23190103	23190471	.	+	0	Parent=Os04t0464500-01
Chr04	irgsp1_rep	three_prime_UTR	23190472	23190787	.	+	.	Parent=Os04t0464500-01
Chr04	irgsp1_rep	mRNA	23190942	23192204	.	+	.	ID=Os04t0464600-01;Name=Os04t0464600-01;Locus_id=Os04g0464600;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK105634 (DDBJ%2C Best hit);ORF_evidence=Q01JD8 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087);NIAS_FLcDNA=001-200-D09;Expression=AK105634;TENOR=Os04t0464600-01;KEGG=Os04t0464600-01
Chr04	irgsp1_rep	five_prime_UTR	23190942	23190985	.	+	.	Parent=Os04t0464600-01
Chr04	irgsp1_rep	CDS	23190986	23191981	.	+	0	Parent=Os04t0464600-01
Chr04	irgsp1_rep	three_prime_UTR	23191982	23192204	.	+	.	Parent=Os04t0464600-01
Chr04	irgsp1_rep	mRNA	23199555	23200122	.	-	.	ID=Os04t0464750-01;Name=Os04t0464750-01;Locus_id=Os04g0464750;Note=Non-protein coding transcript.;Transcript_evidence=AK241410 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065159J08;TENOR=Os04t0464750-01
Chr04	irgsp1_rep	exon	23199555	23200122	.	-	.	Parent=Os04t0464750-01
Chr04	irgsp1_rep	mRNA	23212414	23218087	.	-	.	ID=Os04t0464800-01;Name=Os04t0464800-01;Locus_id=Os04g0464800;RAP-DB Gene Symbol Synonym(s)=OsCFM2;CGSNL Gene Symbol=CFM2;Oryzabase Gene Symbol Synonym(s)=OsCFM2;Note=CRM domain-containing protein%2C Homolog of AtCFM2%2C Regulation of the splicing of group I and group II introns%2C Chloroplast development;Transcript_evidence=EU047713 (maize);ORF_evidence=A0A0P0WB50;GO=Molecular Function: RNA binding (GO:0003723);InterPro=YhbY-like superfamily (IPR035920),RNA-binding%2C CRM domain (IPR001890);Manual Curation=August 21%2C 2020;Literature_PMID=32085638;Oryzabase=23497;TENOR=Os04t0464800-00
Chr04	irgsp1_rep	CDS	23217473	23218087	.	-	0	Parent=Os04t0464800-01
Chr04	irgsp1_rep	CDS	23216241	23216934	.	-	0	Parent=Os04t0464800-01
Chr04	irgsp1_rep	CDS	23216016	23216146	.	-	2	Parent=Os04t0464800-01
Chr04	irgsp1_rep	CDS	23215161	23215478	.	-	0	Parent=Os04t0464800-01
Chr04	irgsp1_rep	CDS	23214902	23215055	.	-	0	Parent=Os04t0464800-01
Chr04	irgsp1_rep	CDS	23213940	23214232	.	-	2	Parent=Os04t0464800-01
Chr04	irgsp1_rep	CDS	23213791	23213854	.	-	0	Parent=Os04t0464800-01
Chr04	irgsp1_rep	CDS	23213595	23213659	.	-	2	Parent=Os04t0464800-01
Chr04	irgsp1_rep	CDS	23213382	23213504	.	-	0	Parent=Os04t0464800-01
Chr04	irgsp1_rep	CDS	23213178	23213280	.	-	0	Parent=Os04t0464800-01
Chr04	irgsp1_rep	CDS	23213098	23213111	.	-	2	Parent=Os04t0464800-01
Chr04	irgsp1_rep	three_prime_UTR	23212898	23213097	.	-	.	Parent=Os04t0464800-01
Chr04	irgsp1_rep	three_prime_UTR	23212695	23212825	.	-	.	Parent=Os04t0464800-01
Chr04	irgsp1_rep	three_prime_UTR	23212414	23212612	.	-	.	Parent=Os04t0464800-01
Chr04	irgsp1_rep	mRNA	23213978	23218156	.	+	.	ID=Os04t0464850-00;Name=Os04t0464850-00;Locus_id=Os04g0464850;Note=Hypothetical protein.;Transcript_evidence=tplb0045k10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0464850-00
Chr04	irgsp1_rep	five_prime_UTR	23213978	23214230	.	+	.	Parent=Os04t0464850-00
Chr04	irgsp1_rep	five_prime_UTR	23214900	23215091	.	+	.	Parent=Os04t0464850-00
Chr04	irgsp1_rep	five_prime_UTR	23215166	23215494	.	+	.	Parent=Os04t0464850-00
Chr04	irgsp1_rep	five_prime_UTR	23216037	23216154	.	+	.	Parent=Os04t0464850-00
Chr04	irgsp1_rep	CDS	23216155	23216168	.	+	0	Parent=Os04t0464850-00
Chr04	irgsp1_rep	CDS	23216263	23216486	.	+	1	Parent=Os04t0464850-00
Chr04	irgsp1_rep	CDS	23216682	23216707	.	+	2	Parent=Os04t0464850-00
Chr04	irgsp1_rep	three_prime_UTR	23216708	23216926	.	+	.	Parent=Os04t0464850-00
Chr04	irgsp1_rep	three_prime_UTR	23217466	23218156	.	+	.	Parent=Os04t0464850-00
Chr04	irgsp1_rep	mRNA	23226181	23228272	.	-	.	ID=Os04t0464966-01;Name=Os04t0464966-01;Locus_id=Os04g0464966;RAP-DB Gene Symbol Synonym(s)=OsFbox217%2C Os_F0121%2C MOF;RAP-DB Gene Name Synonym(s)=F-box protein 217%2C MEIOTIC F-BOX;Oryzabase Gene Symbol Synonym(s)=OsFbox217%2C Os_F0121%2C MOF%2C OsMOF;Oryzabase Gene Name Synonym(s)=F-box protein 217%2C MEIOTIC F-BOX;Note=F-box-containing protein%2C Male meiotic DNA double-strand break repair%2C Regulation of meiotic progression;Transcript_evidence=AK241116,AK287920;ORF_evidence=Q7X7A4;GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain (IPR001810),Leucine-rich repeat domain%2C L domain-like (IPR032675);NIAS_FLcDNA=J065093J12, J065217I01;Manual Curation=September 6%2C 2016;Literature_PMID=27436711;Oryzabase=17004;TENOR=Os04t0464966-01;KEGG=Os04t0464966-01
Chr04	irgsp1_rep	five_prime_UTR	23228236	23228272	.	-	.	Parent=Os04t0464966-01
Chr04	irgsp1_rep	CDS	23227204	23228235	.	-	0	Parent=Os04t0464966-01
Chr04	irgsp1_rep	CDS	23226754	23226909	.	-	0	Parent=Os04t0464966-01
Chr04	irgsp1_rep	CDS	23226423	23226662	.	-	0	Parent=Os04t0464966-01
Chr04	irgsp1_rep	three_prime_UTR	23226181	23226422	.	-	.	Parent=Os04t0464966-01
Chr04	irgsp1_rep	mRNA	23228941	23234936	.	+	.	ID=Os04t0465000-01;Name=Os04t0465000-01;Locus_id=Os04g0465000;Note=Sterile alpha motif SAM domain containing protein.;Transcript_evidence=AK102302 (DDBJ%2C Best hit);ORF_evidence=Q01JD5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Sterile alpha motif domain (IPR001660),Sterile alpha motif/pointed domain (IPR013761),Sterile alpha motif%2C type 1 (IPR021129);NIAS_FLcDNA=J033089O08;Expression=AK102302;TENOR=Os04t0465000-01;KEGG=Os04t0465000-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	23228941	23229133	.	+	.	Parent=Os04t0465000-01
Chr04	irgsp1_rep	CDS	23229134	23229196	.	+	0	Parent=Os04t0465000-01
Chr04	irgsp1_rep	CDS	23230618	23230754	.	+	0	Parent=Os04t0465000-01
Chr04	irgsp1_rep	CDS	23231705	23231745	.	+	1	Parent=Os04t0465000-01
Chr04	irgsp1_rep	CDS	23231849	23232447	.	+	2	Parent=Os04t0465000-01
Chr04	irgsp1_rep	CDS	23232948	23233028	.	+	0	Parent=Os04t0465000-01
Chr04	irgsp1_rep	CDS	23233495	23233557	.	+	0	Parent=Os04t0465000-01
Chr04	irgsp1_rep	CDS	23234490	23234546	.	+	0	Parent=Os04t0465000-01
Chr04	irgsp1_rep	three_prime_UTR	23234547	23234936	.	+	.	Parent=Os04t0465000-01
Chr04	irgsp1_rep	mRNA	23228944	23234915	.	+	.	ID=Os04t0465000-02;Name=Os04t0465000-02;Locus_id=Os04g0465000;Note=Similar to OSIGBa0130P02.4 protein.;Transcript_evidence=AK060688 (DDBJ%2C Best hit);ORF_evidence=Q01JD5 (UniProt);NIAS_FLcDNA=001-030-A05;Expression=AK060688;TENOR=Os04t0465000-02;KEGG=Os04t0465000-02;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	23228944	23229133	.	+	.	Parent=Os04t0465000-02
Chr04	irgsp1_rep	CDS	23229134	23229196	.	+	0	Parent=Os04t0465000-02
Chr04	irgsp1_rep	CDS	23230618	23230754	.	+	0	Parent=Os04t0465000-02
Chr04	irgsp1_rep	CDS	23231705	23231789	.	+	1	Parent=Os04t0465000-02
Chr04	irgsp1_rep	three_prime_UTR	23231790	23232447	.	+	.	Parent=Os04t0465000-02
Chr04	irgsp1_rep	three_prime_UTR	23232948	23233028	.	+	.	Parent=Os04t0465000-02
Chr04	irgsp1_rep	three_prime_UTR	23233495	23233557	.	+	.	Parent=Os04t0465000-02
Chr04	irgsp1_rep	three_prime_UTR	23234490	23234915	.	+	.	Parent=Os04t0465000-02
Chr04	irgsp1_rep	mRNA	23235808	23237158	.	-	.	ID=Os04t0465100-01;Name=Os04t0465100-01;Locus_id=Os04g0465100;Oryzabase Gene Symbol Synonym(s)=prx55;Oryzabase Gene Name Synonym(s)=class III peroxidase 55;Note=Haem peroxidase%2C plant/fungal/bacterial family protein.;Transcript_evidence=AK243216 (DDBJ%2C Best hit);ORF_evidence=Q01JD4 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J100043E04;Oryzabase=14580;TENOR=Os04t0465100-01;KEGG=Os04t0465100-01
Chr04	irgsp1_rep	five_prime_UTR	23237089	23237158	.	-	.	Parent=Os04t0465100-01
Chr04	irgsp1_rep	CDS	23236081	23237088	.	-	0	Parent=Os04t0465100-01
Chr04	irgsp1_rep	three_prime_UTR	23235808	23236080	.	-	.	Parent=Os04t0465100-01
Chr04	irgsp1_rep	mRNA	23242302	23243199	.	-	.	ID=Os04t0465300-01;Name=Os04t0465300-01;Locus_id=Os04g0465300;RAP-DB Gene Symbol Synonym(s)=GASR2%2C OsGASR2;RAP-DB Gene Name Synonym(s)=GA-stimulated transcript homolog 2%2C GA-stimulated transcript-related gene 2;Oryzabase Gene Symbol Synonym(s)=OsGASR2%2C GASR2;Oryzabase Gene Name Synonym(s)=GAST (GA-stimulated transcript) homolog 2%2C GAST homolog 2%2C GA-stimulated transcript homolog 2%2C GA-stimulated transcript-related gene 2;Note=A member of the GAST (gibberellin (GA)-Stimulated Transcript) family%2C Cell division%2C Differentiation of panicles;Transcript_evidence=AK240853,AB192575;ORF_evidence=Q7X885;InterPro=Gibberellin regulated protein (IPR003854);NIAS_FLcDNA=J065021D20;Manual Curation=June 15%2C 2017;Literature_PMID=16905871;Oryzabase=14272;TENOR=Os04t0465300-01;KEGG=Os04t0465300-01;Subcellular location=apoplast (GO:0048046), cell wall (GO:0005618)
Chr04	irgsp1_rep	five_prime_UTR	23243093	23243199	.	-	.	Parent=Os04t0465300-01
Chr04	irgsp1_rep	CDS	23243027	23243092	.	-	0	Parent=Os04t0465300-01
Chr04	irgsp1_rep	CDS	23242852	23242918	.	-	0	Parent=Os04t0465300-01
Chr04	irgsp1_rep	CDS	23242561	23242745	.	-	2	Parent=Os04t0465300-01
Chr04	irgsp1_rep	three_prime_UTR	23242302	23242560	.	-	.	Parent=Os04t0465300-01
Chr04	irgsp1_rep	mRNA	23272710	23275363	.	+	.	ID=Os04t0465432-00;Name=Os04t0465432-00;Locus_id=Os04g0465432;Oryzabase Gene Symbol Synonym(s)=OsTBL53%2C TBL53;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 53;Note=Domain of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001173972.1 (RefSeq);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);Oryzabase=21508;TENOR=Os04t0465432-00
Chr04	irgsp1_rep	CDS	23272710	23272821	.	+	0	Parent=Os04t0465432-00
Chr04	irgsp1_rep	CDS	23273464	23273756	.	+	2	Parent=Os04t0465432-00
Chr04	irgsp1_rep	CDS	23274531	23274588	.	+	0	Parent=Os04t0465432-00
Chr04	irgsp1_rep	CDS	23274693	23275363	.	+	2	Parent=Os04t0465432-00
Chr04	irgsp1_rep	mRNA	23275807	23277462	.	-	.	ID=Os04t0465500-02;Name=Os04t0465500-02;Locus_id=Os04g0465500;Note=Acyl-CoA N-acyltransferase domain containing protein.;Transcript_evidence=AK105909 (DDBJ%2C Best hit),AK065943 (DDBJ%2C Best hit);ORF_evidence=NP_001152682.1 (RefSeq);NIAS_FLcDNA=001-204-G06,J013049D12;Expression=AK105909;TENOR=Os04t0465500-02;KEGG=Os04t0465500-02
Chr04	irgsp1_rep	five_prime_UTR	23277375	23277462	.	-	.	Parent=Os04t0465500-02
Chr04	irgsp1_rep	CDS	23276698	23277374	.	-	0	Parent=Os04t0465500-02
Chr04	irgsp1_rep	CDS	23275822	23276095	.	-	1	Parent=Os04t0465500-02
Chr04	irgsp1_rep	three_prime_UTR	23275807	23275821	.	-	.	Parent=Os04t0465500-02
Chr04	irgsp1_rep	mRNA	23278475	23279374	.	+	.	ID=Os04t0465600-01;Name=Os04t0465600-01;Locus_id=Os04g0465600;Note=Bet v I allergen family protein.;Transcript_evidence=AK119676 (DDBJ%2C Best hit),AK059231 (DDBJ%2C Best hit);ORF_evidence=Q0IJ88 (UniProt);GO=Biological Process: defense response (GO:0006952),Biological Process: response to biotic stimulus (GO:0009607);InterPro=Bet v I allergen (IPR000916),START-like domain (IPR023393);NIAS_FLcDNA=002-156-G11,001-024-E05;TENOR=Os04t0465600-01
Chr04	irgsp1_rep	five_prime_UTR	23278475	23278559	.	+	.	Parent=Os04t0465600-01
Chr04	irgsp1_rep	CDS	23278560	23278740	.	+	0	Parent=Os04t0465600-01
Chr04	irgsp1_rep	CDS	23278884	23279176	.	+	2	Parent=Os04t0465600-01
Chr04	irgsp1_rep	three_prime_UTR	23279177	23279374	.	+	.	Parent=Os04t0465600-01
Chr04	irgsp1_rep	mRNA	23287964	23290500	.	+	.	ID=Os04t0465700-01;Name=Os04t0465700-01;Locus_id=Os04g0465700;CGSNL Gene Symbol=RDR2;CGSNL Gene Name=RNA-DEPENDENT RNA POLYMERASE 2;Oryzabase Gene Symbol Synonym(s)=OsRDR2;Oryzabase Gene Name Synonym(s)=RNA-dependent RNA polymerase 2%2C Probable RNA-dependent RNA polymerase 2;Note=RNA-dependent RNA polymerase%2C eukaryotic-type domain containing protein.;Transcript_evidence=AK064379 (DDBJ%2C Best hit);ORF_evidence=Q19VG2 (UniProt);GO=Molecular Function: RNA-directed RNA polymerase activity (GO:0003968);InterPro=RNA-dependent RNA polymerase%2C eukaryotic-type (IPR007855);NIAS_FLcDNA=002-108-D10;Oryzabase=8343;Expression=AK064379;TENOR=Os04t0465700-01;KEGG=Os04t0465700-01 (EC:2.7.7.48)
Chr04	irgsp1_rep	five_prime_UTR	23287964	23287965	.	+	.	Parent=Os04t0465700-01
Chr04	irgsp1_rep	CDS	23287966	23288129	.	+	0	Parent=Os04t0465700-01
Chr04	irgsp1_rep	CDS	23288349	23288499	.	+	1	Parent=Os04t0465700-01
Chr04	irgsp1_rep	CDS	23289200	23290018	.	+	0	Parent=Os04t0465700-01
Chr04	irgsp1_rep	three_prime_UTR	23290019	23290500	.	+	.	Parent=Os04t0465700-01
Chr04	irgsp1_rep	mRNA	23289054	23289988	.	-	.	ID=Os04t0465750-01;Name=Os04t0465750-01;Locus_id=Os04g0465750;Note=Hypothetical gene.;Transcript_evidence=AK241132 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065097K15;TENOR=Os04t0465750-01;KEGG=Os04t0465750-01
Chr04	irgsp1_rep	CDS	23289530	23289988	.	-	0	Parent=Os04t0465750-01
Chr04	irgsp1_rep	three_prime_UTR	23289054	23289529	.	-	.	Parent=Os04t0465750-01
Chr04	irgsp1_rep	mRNA	23291355	23295191	.	+	.	ID=Os04t0465800-01;Name=Os04t0465800-01;Locus_id=Os04g0465800;Note=Similar to OSIGBa0115M15.1 protein.;Transcript_evidence=AK107498 (DDBJ%2C Best hit);ORF_evidence=Q01KF8 (UniProt);NIAS_FLcDNA=002-129-D10;Expression=AK107498;TENOR=Os04t0465800-01;KEGG=Os04t0465800-01
Chr04	irgsp1_rep	five_prime_UTR	23291355	23291457	.	+	.	Parent=Os04t0465800-01
Chr04	irgsp1_rep	CDS	23291458	23291787	.	+	0	Parent=Os04t0465800-01
Chr04	irgsp1_rep	CDS	23292556	23292636	.	+	0	Parent=Os04t0465800-01
Chr04	irgsp1_rep	CDS	23292747	23292886	.	+	0	Parent=Os04t0465800-01
Chr04	irgsp1_rep	CDS	23293163	23293293	.	+	1	Parent=Os04t0465800-01
Chr04	irgsp1_rep	CDS	23294058	23294302	.	+	2	Parent=Os04t0465800-01
Chr04	irgsp1_rep	three_prime_UTR	23294303	23294311	.	+	.	Parent=Os04t0465800-01
Chr04	irgsp1_rep	three_prime_UTR	23294451	23294828	.	+	.	Parent=Os04t0465800-01
Chr04	irgsp1_rep	three_prime_UTR	23294941	23295191	.	+	.	Parent=Os04t0465800-01
Chr04	irgsp1_rep	mRNA	23291443	23293733	.	+	.	ID=Os04t0465800-02;Name=Os04t0465800-02;Locus_id=Os04g0465800;Note=Similar to OSIGBa0115M15.1 protein.;Transcript_evidence=AK064701 (DDBJ%2C Best hit);ORF_evidence=Q01KF8 (UniProt);NIAS_FLcDNA=002-116-G12;Expression=AK064701;TENOR=Os04t0465800-02;KEGG=Os04t0465800-02
Chr04	irgsp1_rep	five_prime_UTR	23291443	23291457	.	+	.	Parent=Os04t0465800-02
Chr04	irgsp1_rep	CDS	23291458	23291787	.	+	0	Parent=Os04t0465800-02
Chr04	irgsp1_rep	CDS	23292556	23292636	.	+	0	Parent=Os04t0465800-02
Chr04	irgsp1_rep	CDS	23292747	23292886	.	+	0	Parent=Os04t0465800-02
Chr04	irgsp1_rep	CDS	23293163	23293418	.	+	1	Parent=Os04t0465800-02
Chr04	irgsp1_rep	three_prime_UTR	23293419	23293733	.	+	.	Parent=Os04t0465800-02
Chr04	irgsp1_rep	mRNA	23294062	23295712	.	-	.	ID=Os04t0465900-00;Name=Os04t0465900-00;Locus_id=Os04g0465900;CGSNL Gene Symbol=KIN6;CGSNL Gene Name=KINASE 6;Oryzabase Gene Symbol Synonym(s)=OsKIN6;Oryzabase Gene Name Synonym(s)=Kinase 6;Note=Similar to OSIGBa0115M15.2 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01KF7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=23628;TENOR=Os04t0465900-00
Chr04	irgsp1_rep	CDS	23295703	23295712	.	-	0	Parent=Os04t0465900-00
Chr04	irgsp1_rep	CDS	23295518	23295631	.	-	2	Parent=Os04t0465900-00
Chr04	irgsp1_rep	CDS	23295309	23295428	.	-	2	Parent=Os04t0465900-00
Chr04	irgsp1_rep	CDS	23294922	23295140	.	-	2	Parent=Os04t0465900-00
Chr04	irgsp1_rep	CDS	23294727	23294842	.	-	2	Parent=Os04t0465900-00
Chr04	irgsp1_rep	CDS	23294062	23294298	.	-	0	Parent=Os04t0465900-00
Chr04	irgsp1_rep	mRNA	23301554	23302261	.	+	.	ID=Os04t0466000-01;Name=Os04t0466000-01;Locus_id=Os04g0466000;Note=Similar to OSIGBa0115M15.3 protein.;Transcript_evidence=AK107738 (DDBJ%2C Best hit);ORF_evidence=Q01KF6 (UniProt);NIAS_FLcDNA=002-132-G05;Expression=AK107738;TENOR=Os04t0466000-01;KEGG=Os04t0466000-01
Chr04	irgsp1_rep	five_prime_UTR	23301554	23301713	.	+	.	Parent=Os04t0466000-01
Chr04	irgsp1_rep	CDS	23301714	23301950	.	+	0	Parent=Os04t0466000-01
Chr04	irgsp1_rep	three_prime_UTR	23301951	23302261	.	+	.	Parent=Os04t0466000-01
Chr04	irgsp1_rep	mRNA	23305691	23309123	.	-	.	ID=Os04t0466100-01;Name=Os04t0466100-01;Locus_id=Os04g0466100;Note=Similar to Cell division protein FtsH-like protein.;Transcript_evidence=AK064543 (DDBJ%2C Best hit);ORF_evidence=Q01KF5 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);NIAS_FLcDNA=002-112-A09;Expression=AK064543;TENOR=Os04t0466100-01;KEGG=Os04t0466100-01 (EC:3.4.24.-)
Chr04	irgsp1_rep	five_prime_UTR	23309122	23309123	.	-	.	Parent=Os04t0466100-01
Chr04	irgsp1_rep	CDS	23309095	23309121	.	-	0	Parent=Os04t0466100-01
Chr04	irgsp1_rep	CDS	23308708	23309008	.	-	0	Parent=Os04t0466100-01
Chr04	irgsp1_rep	CDS	23308188	23308384	.	-	2	Parent=Os04t0466100-01
Chr04	irgsp1_rep	three_prime_UTR	23308172	23308187	.	-	.	Parent=Os04t0466100-01
Chr04	irgsp1_rep	three_prime_UTR	23305691	23307259	.	-	.	Parent=Os04t0466100-01
Chr04	irgsp1_rep	mRNA	23315118	23318842	.	+	.	ID=Os04t0466600-01;Name=Os04t0466600-01;Locus_id=Os04g0466600;CGSNL Gene Symbol=AIH;CGSNL Gene Name=AGMATINE IMINOHYDROLASE;Oryzabase Gene Symbol Synonym(s)=OsAIH;Oryzabase Gene Name Synonym(s)=Agmatine iminohydrolase;Note=Agmatine deiminase domain containing protein.;Transcript_evidence=AK243321 (DDBJ%2C Best hit);ORF_evidence=Q01KF3 (UniProt);GO=Biological Process: putrescine biosynthetic process (GO:0009446),Molecular Function: agmatine deiminase activity (GO:0047632);InterPro=Peptidyl-arginine deiminase%2C Porphyromonas-type (IPR007466),Agmatine deiminase (IPR017754);NIAS_FLcDNA=J100056P20;Oryzabase=21662;TENOR=Os04t0466600-01;KEGG=Os04t0466600-01 (EC:3.5.3.12)
Chr04	irgsp1_rep	five_prime_UTR	23315118	23315266	.	+	.	Parent=Os04t0466600-01
Chr04	irgsp1_rep	CDS	23315267	23315365	.	+	0	Parent=Os04t0466600-01
Chr04	irgsp1_rep	CDS	23316410	23316523	.	+	0	Parent=Os04t0466600-01
Chr04	irgsp1_rep	CDS	23316629	23316724	.	+	0	Parent=Os04t0466600-01
Chr04	irgsp1_rep	CDS	23316801	23316885	.	+	0	Parent=Os04t0466600-01
Chr04	irgsp1_rep	CDS	23317108	23317163	.	+	2	Parent=Os04t0466600-01
Chr04	irgsp1_rep	CDS	23317278	23317356	.	+	0	Parent=Os04t0466600-01
Chr04	irgsp1_rep	CDS	23317445	23317579	.	+	2	Parent=Os04t0466600-01
Chr04	irgsp1_rep	CDS	23317688	23317923	.	+	2	Parent=Os04t0466600-01
Chr04	irgsp1_rep	CDS	23318019	23318171	.	+	0	Parent=Os04t0466600-01
Chr04	irgsp1_rep	CDS	23318345	23318434	.	+	0	Parent=Os04t0466600-01
Chr04	irgsp1_rep	three_prime_UTR	23318435	23318842	.	+	.	Parent=Os04t0466600-01
Chr04	irgsp1_rep	mRNA	23318895	23326781	.	-	.	ID=Os04t0466700-01;Name=Os04t0466700-01;Locus_id=Os04g0466700;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=AK119336 (DDBJ%2C Best hit);ORF_evidence=Q01KF2 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),IPI1-like domain (IPR024679);NIAS_FLcDNA=001-131-C07;Expression=AK119336;TENOR=Os04t0466700-01;KEGG=Os04t0466700-01
Chr04	irgsp1_rep	five_prime_UTR	23326704	23326781	.	-	.	Parent=Os04t0466700-01
Chr04	irgsp1_rep	CDS	23326611	23326703	.	-	0	Parent=Os04t0466700-01
Chr04	irgsp1_rep	CDS	23326435	23326507	.	-	0	Parent=Os04t0466700-01
Chr04	irgsp1_rep	CDS	23326201	23326323	.	-	2	Parent=Os04t0466700-01
Chr04	irgsp1_rep	CDS	23325894	23326063	.	-	2	Parent=Os04t0466700-01
Chr04	irgsp1_rep	CDS	23325482	23325640	.	-	0	Parent=Os04t0466700-01
Chr04	irgsp1_rep	CDS	23325037	23325183	.	-	0	Parent=Os04t0466700-01
Chr04	irgsp1_rep	CDS	23324806	23324869	.	-	0	Parent=Os04t0466700-01
Chr04	irgsp1_rep	CDS	23323812	23324116	.	-	2	Parent=Os04t0466700-01
Chr04	irgsp1_rep	CDS	23323366	23323494	.	-	0	Parent=Os04t0466700-01
Chr04	irgsp1_rep	CDS	23323119	23323232	.	-	0	Parent=Os04t0466700-01
Chr04	irgsp1_rep	CDS	23322942	23323028	.	-	0	Parent=Os04t0466700-01
Chr04	irgsp1_rep	CDS	23322045	23322164	.	-	0	Parent=Os04t0466700-01
Chr04	irgsp1_rep	CDS	23321843	23321936	.	-	0	Parent=Os04t0466700-01
Chr04	irgsp1_rep	CDS	23321607	23321741	.	-	2	Parent=Os04t0466700-01
Chr04	irgsp1_rep	CDS	23321382	23321516	.	-	2	Parent=Os04t0466700-01
Chr04	irgsp1_rep	CDS	23321071	23321219	.	-	2	Parent=Os04t0466700-01
Chr04	irgsp1_rep	CDS	23320862	23320993	.	-	0	Parent=Os04t0466700-01
Chr04	irgsp1_rep	CDS	23320006	23320329	.	-	0	Parent=Os04t0466700-01
Chr04	irgsp1_rep	CDS	23319561	23319695	.	-	0	Parent=Os04t0466700-01
Chr04	irgsp1_rep	three_prime_UTR	23319542	23319560	.	-	.	Parent=Os04t0466700-01
Chr04	irgsp1_rep	three_prime_UTR	23319272	23319447	.	-	.	Parent=Os04t0466700-01
Chr04	irgsp1_rep	three_prime_UTR	23318895	23319105	.	-	.	Parent=Os04t0466700-01
Chr04	irgsp1_rep	mRNA	23329903	23331046	.	+	.	ID=Os04t0467000-01;Name=Os04t0467000-01;Locus_id=Os04g0467000;Note=Conserved hypothetical protein.;Transcript_evidence=AK073154 (DDBJ%2C Best hit);ORF_evidence=Q7XJW5 (UniProt);NIAS_FLcDNA=J033011D19;Expression=AK073154;TENOR=Os04t0467000-01;KEGG=Os04t0467000-01
Chr04	irgsp1_rep	five_prime_UTR	23329903	23330008	.	+	.	Parent=Os04t0467000-01
Chr04	irgsp1_rep	CDS	23330009	23330117	.	+	0	Parent=Os04t0467000-01
Chr04	irgsp1_rep	CDS	23330218	23330276	.	+	2	Parent=Os04t0467000-01
Chr04	irgsp1_rep	CDS	23330413	23330676	.	+	0	Parent=Os04t0467000-01
Chr04	irgsp1_rep	three_prime_UTR	23330677	23331046	.	+	.	Parent=Os04t0467000-01
Chr04	irgsp1_rep	mRNA	23331134	23336945	.	-	.	ID=Os04t0467100-01;Name=Os04t0467100-01;Locus_id=Os04g0467100;Note=Similar to OSIGBa0115M15.9 protein.;Transcript_evidence=AK072142 (DDBJ%2C Best hit);ORF_evidence=Q01KF0 (UniProt);NIAS_FLcDNA=J013128K07;Expression=AK072142;TENOR=Os04t0467100-01;KEGG=Os04t0467100-01
Chr04	irgsp1_rep	five_prime_UTR	23336715	23336945	.	-	.	Parent=Os04t0467100-01
Chr04	irgsp1_rep	five_prime_UTR	23335527	23335587	.	-	.	Parent=Os04t0467100-01
Chr04	irgsp1_rep	CDS	23335508	23335526	.	-	0	Parent=Os04t0467100-01
Chr04	irgsp1_rep	CDS	23333808	23334493	.	-	2	Parent=Os04t0467100-01
Chr04	irgsp1_rep	CDS	23332357	23333534	.	-	0	Parent=Os04t0467100-01
Chr04	irgsp1_rep	CDS	23331489	23331597	.	-	1	Parent=Os04t0467100-01
Chr04	irgsp1_rep	three_prime_UTR	23331134	23331488	.	-	.	Parent=Os04t0467100-01
Chr04	irgsp1_rep	mRNA	23354379	23355889	.	-	.	ID=Os04t0467300-00;Name=Os04t0467300-00;Locus_id=Os04g0467300;Note=Similar to OSIGBa0115M15.10 protein.;Transcript_evidence=EU970964 (DDBJ);ORF_evidence=Q01IS3 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);TENOR=Os04t0467300-00;KEGG=Os04t0467300-00
Chr04	irgsp1_rep	CDS	23354435	23355889	.	-	0	Parent=Os04t0467300-00
Chr04	irgsp1_rep	three_prime_UTR	23354379	23354434	.	-	.	Parent=Os04t0467300-00
Chr04	irgsp1_rep	mRNA	23357015	23361819	.	-	.	ID=Os04t0467400-01;Name=Os04t0467400-01;Locus_id=Os04g0467400;Oryzabase Gene Symbol Synonym(s)=OsCAF1-3%2C OsCAF1-4;Oryzabase Gene Name Synonym(s)=CCR4-associated factor 1-3%2C carbon catabolite repressor 4-associated factor 1-3%2C CCR4-associated factor 1-4%2C carbon catabolite repressor 4-associated factor 1-4;Note=Similar to Poly(A)-specific ribonuclease PARN (EC 3.1.13.4) (Polyadenylate- specific ribonuclease) (AtPARN).;Transcript_evidence=AK068773 (DDBJ%2C Best hit);ORF_evidence=Q01KE8 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676);InterPro=Ribonuclease CAF1 (IPR006941),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J013158D23;Oryzabase=18264;Expression=AK068773;TENOR=Os04t0467400-01;KEGG=Os04t0467400-01 (EC:3.1.13.4)
Chr04	irgsp1_rep	five_prime_UTR	23361755	23361819	.	-	.	Parent=Os04t0467400-01
Chr04	irgsp1_rep	CDS	23361363	23361754	.	-	0	Parent=Os04t0467400-01
Chr04	irgsp1_rep	CDS	23360015	23360145	.	-	1	Parent=Os04t0467400-01
Chr04	irgsp1_rep	CDS	23359699	23359799	.	-	2	Parent=Os04t0467400-01
Chr04	irgsp1_rep	three_prime_UTR	23359493	23359698	.	-	.	Parent=Os04t0467400-01
Chr04	irgsp1_rep	three_prime_UTR	23358993	23359106	.	-	.	Parent=Os04t0467400-01
Chr04	irgsp1_rep	three_prime_UTR	23358618	23358744	.	-	.	Parent=Os04t0467400-01
Chr04	irgsp1_rep	three_prime_UTR	23358176	23358440	.	-	.	Parent=Os04t0467400-01
Chr04	irgsp1_rep	three_prime_UTR	23357015	23358028	.	-	.	Parent=Os04t0467400-01
Chr04	irgsp1_rep	mRNA	23362237	23364985	.	+	.	ID=Os04t0467550-00;Name=Os04t0467550-00;Locus_id=Os04g0467550;Note=Non-protein coding transcript.;Transcript_evidence=BT017430 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0467550-00
Chr04	irgsp1_rep	exon	23362237	23362576	.	+	.	Parent=Os04t0467550-00
Chr04	irgsp1_rep	exon	23362786	23362919	.	+	.	Parent=Os04t0467550-00
Chr04	irgsp1_rep	exon	23363354	23363439	.	+	.	Parent=Os04t0467550-00
Chr04	irgsp1_rep	exon	23363623	23363866	.	+	.	Parent=Os04t0467550-00
Chr04	irgsp1_rep	exon	23364064	23364120	.	+	.	Parent=Os04t0467550-00
Chr04	irgsp1_rep	exon	23364815	23364985	.	+	.	Parent=Os04t0467550-00
Chr04	irgsp1_rep	mRNA	23362240	23364934	.	-	.	ID=Os04t0467700-01;Name=Os04t0467700-01;Locus_id=Os04g0467700;Note=Similar to Indole-3-glycerol phosphate synthase%2C chloroplast precursor (EC 4.1.1.48) (IGPS).;Transcript_evidence=AK101835 (DDBJ%2C Best hit);ORF_evidence=Q01IS1 (UniProt);GO=Biological Process: tryptophan metabolic process (GO:0006568),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: indole-3-glycerol-phosphate synthase activity (GO:0004425);InterPro=Indole-3-glycerol phosphate synthase%2C conserved site (IPR001468),Ribulose-phosphate binding barrel (IPR011060),Aldolase-type TIM barrel (IPR013785),Indole-3-glycerol phosphate synthase (IPR013798);NIAS_FLcDNA=J033069C16;Expression=AK101835;TENOR=Os04t0467700-01;KEGG=Os04t0467700-01 (EC:4.1.1.48)
Chr04	irgsp1_rep	five_prime_UTR	23364934	23364934	.	-	.	Parent=Os04t0467700-01
Chr04	irgsp1_rep	CDS	23364805	23364933	.	-	0	Parent=Os04t0467700-01
Chr04	irgsp1_rep	CDS	23364040	23364114	.	-	0	Parent=Os04t0467700-01
Chr04	irgsp1_rep	CDS	23363900	23363944	.	-	0	Parent=Os04t0467700-01
Chr04	irgsp1_rep	CDS	23363626	23363790	.	-	0	Parent=Os04t0467700-01
Chr04	irgsp1_rep	CDS	23363364	23363442	.	-	0	Parent=Os04t0467700-01
Chr04	irgsp1_rep	CDS	23362841	23362923	.	-	2	Parent=Os04t0467700-01
Chr04	irgsp1_rep	CDS	23362669	23362737	.	-	0	Parent=Os04t0467700-01
Chr04	irgsp1_rep	CDS	23362471	23362566	.	-	0	Parent=Os04t0467700-01
Chr04	irgsp1_rep	three_prime_UTR	23362240	23362470	.	-	.	Parent=Os04t0467700-01
Chr04	irgsp1_rep	mRNA	23367250	23371730	.	-	.	ID=Os04t0467800-01;Name=Os04t0467800-01;Locus_id=Os04g0467800;Note=Similar to OSIGBa0128P10.4 protein.;Transcript_evidence=AK099483 (DDBJ%2C Best hit);ORF_evidence=Q01IS0 (UniProt);NIAS_FLcDNA=J013025N02;Expression=AK099483;TENOR=Os04t0467800-01;KEGG=Os04t0467800-01
Chr04	irgsp1_rep	five_prime_UTR	23371636	23371730	.	-	.	Parent=Os04t0467800-01
Chr04	irgsp1_rep	CDS	23371381	23371635	.	-	0	Parent=Os04t0467800-01
Chr04	irgsp1_rep	three_prime_UTR	23370741	23371380	.	-	.	Parent=Os04t0467800-01
Chr04	irgsp1_rep	three_prime_UTR	23368979	23370574	.	-	.	Parent=Os04t0467800-01
Chr04	irgsp1_rep	three_prime_UTR	23368820	23368896	.	-	.	Parent=Os04t0467800-01
Chr04	irgsp1_rep	three_prime_UTR	23368205	23368263	.	-	.	Parent=Os04t0467800-01
Chr04	irgsp1_rep	three_prime_UTR	23367855	23368010	.	-	.	Parent=Os04t0467800-01
Chr04	irgsp1_rep	three_prime_UTR	23367250	23367643	.	-	.	Parent=Os04t0467800-01
Chr04	irgsp1_rep	mRNA	23371943	23378620	.	-	.	ID=Os04t0467901-01;Name=Os04t0467901-01;Locus_id=Os04g0467901;RAP-DB Gene Symbol Synonym(s)=OsKCH2;CGSNL Gene Symbol=KCH2;Oryzabase Gene Symbol Synonym(s)=OsKCH2;Oryzabase Gene Name Synonym(s)=Kinesins with a calponin homology domain 2%2C Kinesins with CH domain 2;Note=Plant-specific kinesin-14%2C Processive minus-end-directed microtubule motor;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: microtubule binding (GO:0008017);InterPro=CH domain superfamily (IPR036872),Kinesin motor domain superfamily (IPR036961),P-loop containing nucleoside triphosphate hydrolase (IPR027417),Calponin homology domain (IPR001715),Kinesin motor domain (IPR001752);Manual Curation=May 11%2C 2018;Literature_PMID=29540705,19106179;Oryzabase=22589;TENOR=Os04t0467901-00
Chr04	irgsp1_rep	five_prime_UTR	23378554	23378620	.	-	.	Parent=Os04t0467901-01
Chr04	irgsp1_rep	CDS	23378487	23378553	.	-	0	Parent=Os04t0467901-01
Chr04	irgsp1_rep	CDS	23377633	23377796	.	-	2	Parent=Os04t0467901-01
Chr04	irgsp1_rep	CDS	23377364	23377507	.	-	0	Parent=Os04t0467901-01
Chr04	irgsp1_rep	CDS	23376629	23376964	.	-	0	Parent=Os04t0467901-01
Chr04	irgsp1_rep	CDS	23376418	23376486	.	-	0	Parent=Os04t0467901-01
Chr04	irgsp1_rep	CDS	23376040	23376231	.	-	0	Parent=Os04t0467901-01
Chr04	irgsp1_rep	CDS	23375644	23375725	.	-	0	Parent=Os04t0467901-01
Chr04	irgsp1_rep	CDS	23375482	23375571	.	-	2	Parent=Os04t0467901-01
Chr04	irgsp1_rep	CDS	23375228	23375407	.	-	2	Parent=Os04t0467901-01
Chr04	irgsp1_rep	CDS	23374846	23374952	.	-	2	Parent=Os04t0467901-01
Chr04	irgsp1_rep	CDS	23374438	23374618	.	-	0	Parent=Os04t0467901-01
Chr04	irgsp1_rep	CDS	23374075	23374237	.	-	2	Parent=Os04t0467901-01
Chr04	irgsp1_rep	CDS	23373678	23373931	.	-	1	Parent=Os04t0467901-01
Chr04	irgsp1_rep	CDS	23373435	23373598	.	-	2	Parent=Os04t0467901-01
Chr04	irgsp1_rep	CDS	23373171	23373350	.	-	0	Parent=Os04t0467901-01
Chr04	irgsp1_rep	CDS	23372503	23373077	.	-	0	Parent=Os04t0467901-01
Chr04	irgsp1_rep	CDS	23372206	23372347	.	-	1	Parent=Os04t0467901-01
Chr04	irgsp1_rep	three_prime_UTR	23371943	23372205	.	-	.	Parent=Os04t0467901-01
Chr04	irgsp1_rep	mRNA	23385292	23391194	.	-	.	ID=Os04t0468000-01;Name=Os04t0468000-01;Locus_id=Os04g0468000;Note=Similar to OSIGBa0128P10.7 protein.;Transcript_evidence=AK288868 (DDBJ%2C Best hit);ORF_evidence=Q01IL8 (UniProt);NIAS_FLcDNA=J090078E01;TENOR=Os04t0468000-01;KEGG=Os04t0468000-01
Chr04	irgsp1_rep	five_prime_UTR	23389306	23391194	.	-	.	Parent=Os04t0468000-01
Chr04	irgsp1_rep	CDS	23389078	23389305	.	-	0	Parent=Os04t0468000-01
Chr04	irgsp1_rep	three_prime_UTR	23385292	23389077	.	-	.	Parent=Os04t0468000-01
Chr04	irgsp1_rep	mRNA	23408576	23410250	.	-	.	ID=Os04t0468600-01;Name=Os04t0468600-01;Locus_id=Os04g0468600;Note=Hypothetical conserved gene.;Transcript_evidence=AK061332 (DDBJ%2C Best hit);ORF_evidence=Q01IL8 (UniProt);NIAS_FLcDNA=006-303-A07;Expression=AK061332;TENOR=Os04t0468600-01;KEGG=Os04t0468600-01
Chr04	irgsp1_rep	five_prime_UTR	23410237	23410250	.	-	.	Parent=Os04t0468600-01
Chr04	irgsp1_rep	CDS	23410201	23410236	.	-	0	Parent=Os04t0468600-01
Chr04	irgsp1_rep	CDS	23409734	23409809	.	-	0	Parent=Os04t0468600-01
Chr04	irgsp1_rep	CDS	23408960	23409453	.	-	2	Parent=Os04t0468600-01
Chr04	irgsp1_rep	three_prime_UTR	23408576	23408959	.	-	.	Parent=Os04t0468600-01
Chr04	irgsp1_rep	mRNA	23408576	23410106	.	-	.	ID=Os04t0468600-02;Name=Os04t0468600-02;Locus_id=Os04g0468600;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK105886 (DDBJ%2C Best hit),AK102569 (DDBJ%2C Best hit);ORF_evidence=B7E663 (UniProt);NIAS_FLcDNA=001-204-E02,J033097L18;Expression=AK105886;TENOR=Os04t0468600-02;KEGG=Os04t0468600-02
Chr04	irgsp1_rep	five_prime_UTR	23409967	23410106	.	-	.	Parent=Os04t0468600-02
Chr04	irgsp1_rep	CDS	23409961	23409966	.	-	0	Parent=Os04t0468600-02
Chr04	irgsp1_rep	CDS	23409734	23409809	.	-	0	Parent=Os04t0468600-02
Chr04	irgsp1_rep	CDS	23408960	23409453	.	-	2	Parent=Os04t0468600-02
Chr04	irgsp1_rep	three_prime_UTR	23408576	23408959	.	-	.	Parent=Os04t0468600-02
Chr04	irgsp1_rep	mRNA	23408576	23410104	.	-	.	ID=Os04t0468600-03;Name=Os04t0468600-03;Locus_id=Os04g0468600;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK109364 (DDBJ%2C Best hit);ORF_evidence=B7E663 (UniProt);NIAS_FLcDNA=006-206-F09;Expression=AK109364;TENOR=Os04t0468600-03;KEGG=Os04t0468600-03
Chr04	irgsp1_rep	five_prime_UTR	23409967	23410104	.	-	.	Parent=Os04t0468600-03
Chr04	irgsp1_rep	CDS	23409961	23409966	.	-	0	Parent=Os04t0468600-03
Chr04	irgsp1_rep	CDS	23409734	23409809	.	-	0	Parent=Os04t0468600-03
Chr04	irgsp1_rep	CDS	23408960	23409453	.	-	2	Parent=Os04t0468600-03
Chr04	irgsp1_rep	three_prime_UTR	23408684	23408959	.	-	.	Parent=Os04t0468600-03
Chr04	irgsp1_rep	three_prime_UTR	23408576	23408630	.	-	.	Parent=Os04t0468600-03
Chr04	irgsp1_rep	mRNA	23408498	23410104	.	-	.	ID=Os04t0468600-05;Name=Os04t0468600-05;Locus_id=Os04g0468600;Note=Similar to cDNA clone:006-303-A07%2C full insert sequence.;Transcript_evidence=AK067537 (DDBJ%2C Best hit);ORF_evidence=B7E663 (UniProt);NIAS_FLcDNA=J013109L21;Expression=AK067537;TENOR=Os04t0468600-05;KEGG=Os04t0468600-05
Chr04	irgsp1_rep	five_prime_UTR	23409967	23410104	.	-	.	Parent=Os04t0468600-05
Chr04	irgsp1_rep	CDS	23409961	23409966	.	-	0	Parent=Os04t0468600-05
Chr04	irgsp1_rep	CDS	23409639	23409809	.	-	0	Parent=Os04t0468600-05
Chr04	irgsp1_rep	three_prime_UTR	23409454	23409638	.	-	.	Parent=Os04t0468600-05
Chr04	irgsp1_rep	three_prime_UTR	23408498	23408998	.	-	.	Parent=Os04t0468600-05
Chr04	irgsp1_rep	mRNA	23408576	23409942	.	-	.	ID=Os04t0468600-06;Name=Os04t0468600-06;Locus_id=Os04g0468600;Note=Similar to cDNA clone:006-303-A07%2C full insert sequence.;Transcript_evidence=AK066718 (DDBJ%2C Best hit);ORF_evidence=B7E663 (UniProt);NIAS_FLcDNA=J013087B08;Expression=AK066718;TENOR=Os04t0468600-06;KEGG=Os04t0468600-06
Chr04	irgsp1_rep	five_prime_UTR	23409822	23409942	.	-	.	Parent=Os04t0468600-06
Chr04	irgsp1_rep	CDS	23409734	23409821	.	-	0	Parent=Os04t0468600-06
Chr04	irgsp1_rep	CDS	23408960	23409453	.	-	2	Parent=Os04t0468600-06
Chr04	irgsp1_rep	three_prime_UTR	23408576	23408959	.	-	.	Parent=Os04t0468600-06
Chr04	irgsp1_rep	mRNA	23422508	23423336	.	-	.	ID=Os04t0469000-01;Name=Os04t0469000-01;Locus_id=Os04g0469000;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK062816 (DDBJ%2C Best hit);ORF_evidence=Q01IL4 (UniProt);NIAS_FLcDNA=001-107-E07;Expression=AK062816;TENOR=Os04t0469000-01;KEGG=Os04t0469000-01
Chr04	irgsp1_rep	five_prime_UTR	23423188	23423336	.	-	.	Parent=Os04t0469000-01
Chr04	irgsp1_rep	CDS	23423182	23423187	.	-	0	Parent=Os04t0469000-01
Chr04	irgsp1_rep	CDS	23422693	23423055	.	-	0	Parent=Os04t0469000-01
Chr04	irgsp1_rep	three_prime_UTR	23422508	23422692	.	-	.	Parent=Os04t0469000-01
Chr04	irgsp1_rep	mRNA	23435713	23436494	.	-	.	ID=Os04t0469300-01;Name=Os04t0469300-01;Locus_id=Os04g0469300;Note=Similar to ATFP4.;Transcript_evidence=AK241619 (DDBJ%2C Best hit);ORF_evidence=NP_001151460.1 (RefSeq);NIAS_FLcDNA=J065186H01;TENOR=Os04t0469300-01;KEGG=Os04t0469300-01
Chr04	irgsp1_rep	five_prime_UTR	23436302	23436494	.	-	.	Parent=Os04t0469300-01
Chr04	irgsp1_rep	CDS	23436296	23436301	.	-	0	Parent=Os04t0469300-01
Chr04	irgsp1_rep	CDS	23435755	23436147	.	-	0	Parent=Os04t0469300-01
Chr04	irgsp1_rep	three_prime_UTR	23435713	23435754	.	-	.	Parent=Os04t0469300-01
Chr04	irgsp1_rep	mRNA	23457978	23459630	.	-	.	ID=Os04t0469400-01;Name=Os04t0469400-01;Locus_id=Os04g0469400;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK060385 (DDBJ%2C Best hit);ORF_evidence=Q7XJU7 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-009-F05;Expression=AK060385;TENOR=Os04t0469400-01;KEGG=Os04t0469400-01
Chr04	irgsp1_rep	five_prime_UTR	23459629	23459630	.	-	.	Parent=Os04t0469400-01
Chr04	irgsp1_rep	CDS	23458423	23459628	.	-	0	Parent=Os04t0469400-01
Chr04	irgsp1_rep	three_prime_UTR	23457978	23458422	.	-	.	Parent=Os04t0469400-01
Chr04	irgsp1_rep	mRNA	23460674	23461204	.	+	.	ID=Os04t0469425-00;Name=Os04t0469425-00;Locus_id=Os04g0469425;Note=Hypothetical protein.;Transcript_evidence=AK357511 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0469425-00
Chr04	irgsp1_rep	five_prime_UTR	23460674	23460850	.	+	.	Parent=Os04t0469425-00
Chr04	irgsp1_rep	CDS	23460851	23461072	.	+	0	Parent=Os04t0469425-00
Chr04	irgsp1_rep	three_prime_UTR	23461073	23461204	.	+	.	Parent=Os04t0469425-00
Chr04	irgsp1_rep	mRNA	23463357	23465726	.	+	.	ID=Os04t0469500-01;Name=Os04t0469500-01;Locus_id=Os04g0469500;Oryzabase Gene Symbol Synonym(s)=OsPFK03%2C PFK03%2C PFK3%2C OsPFK3;Oryzabase Gene Name Synonym(s)=phosphofructokinase 3;Note=Similar to OSIGBa0124N08.2 protein.;Transcript_evidence=AK071065 (DDBJ%2C Best hit);ORF_evidence=Q01IL1 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Cellular Component: 6-phosphofructokinase complex (GO:0005945),Molecular Function: 6-phosphofructokinase activity (GO:0003872),Molecular Function: ATP binding (GO:0005524);InterPro=Phosphofructokinase domain (IPR000023),Pyrophosphate-dependent phosphofructokinase TP0108 (IPR012004),Phosphofructokinase (IPR022953);NIAS_FLcDNA=J023080M03;Oryzabase=19614;TENOR=Os04t0469500-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	23463357	23463434	.	+	.	Parent=Os04t0469500-01
Chr04	irgsp1_rep	CDS	23463435	23464070	.	+	0	Parent=Os04t0469500-01
Chr04	irgsp1_rep	CDS	23464662	23465489	.	+	0	Parent=Os04t0469500-01
Chr04	irgsp1_rep	three_prime_UTR	23465490	23465726	.	+	.	Parent=Os04t0469500-01
Chr04	irgsp1_rep	mRNA	23466554	23472222	.	+	.	ID=Os04t0469700-01;Name=Os04t0469700-01;Locus_id=Os04g0469700;Note=Hypothetical protein.;Transcript_evidence=AK068788 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013163K13;TENOR=Os04t0469700-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	23466554	23466833	.	+	.	Parent=Os04t0469700-01
Chr04	irgsp1_rep	five_prime_UTR	23466940	23467054	.	+	.	Parent=Os04t0469700-01
Chr04	irgsp1_rep	five_prime_UTR	23467213	23467242	.	+	.	Parent=Os04t0469700-01
Chr04	irgsp1_rep	CDS	23467243	23467351	.	+	0	Parent=Os04t0469700-01
Chr04	irgsp1_rep	CDS	23467524	23467688	.	+	2	Parent=Os04t0469700-01
Chr04	irgsp1_rep	CDS	23469697	23469701	.	+	2	Parent=Os04t0469700-01
Chr04	irgsp1_rep	three_prime_UTR	23469702	23469989	.	+	.	Parent=Os04t0469700-01
Chr04	irgsp1_rep	three_prime_UTR	23470079	23470290	.	+	.	Parent=Os04t0469700-01
Chr04	irgsp1_rep	three_prime_UTR	23471826	23472222	.	+	.	Parent=Os04t0469700-01
Chr04	irgsp1_rep	mRNA	23467167	23471592	.	-	.	ID=Os04t0469800-01;Name=Os04t0469800-01;Locus_id=Os04g0469800;RAP-DB Gene Symbol Synonym(s)=D11%2C d11(d8)%2C dwf10%2C d8%2C D11/CYP724B1%2C d11%2C CYP724B1;RAP-DB Gene Name Synonym(s)=DWARF SHINKANEAIKOKU OR NOHRIN 28%2C shinkaneaikoku or nohrin 28 dwarf%2C DWARF SHINKANEAIKOKU OR NOHRIN 28%2C OsDWARF11%2C dwarf-11%2C CytoChrome P450 724B1%2C Dwarf protein 11%2C cytoChrome P450 CYP724B1%2C DWARF11%2C CLUSTERED PRIMARY BRANCH 1;CGSNL Gene Symbol=D11;CGSNL Gene Name=DWARF SHINKANEAIKOKU OR NOHRIN 28;Oryzabase Gene Symbol Synonym(s)=d11(d8)%2C dwf10%2C d8%2C D11/CYP724B1%2C d11%2C CYP724B1%2C GNS4%2C OsD11%2C PMM1%2C OsPMM1%2C PMM1/D11%2C NBG4%2C OsCPB1%2C CPB1%2C CPB1/D11;Oryzabase Gene Name Synonym(s)=shinkaneaikoku or nohrin 28 dwarf%2C DWARF SHINKANEAIKOKU OR NOHRIN 28%2C OsDWARF11%2C dwarf-11%2C CytoChrome P450 724B1%2C Dwarf protein 11%2C cytoChrome P450 CYP724B1%2C DWARF11%2C grain number and size on Chromosome 4%2C Panicle Morphology Mutant 1%2C Notched Belly Grain 4%2C CLUSTERED PRIMARY BRANCH 1;Note=CytoChrome P450 superfamily protein%2C CYP724B1%2C Brassinosteroid (BR) biosynthesis%2C Control of panicle architecture and seed size;Transcript_evidence=AB158759,AK106528,AK119772;ORF_evidence=Q6F4F5;GO=Biological Process: iron ion transport (GO:0006826),Biological Process: cellular iron ion homeostasis (GO:0006879),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: ferric iron binding (GO:0008199),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=Bacterioferritin (IPR002024),CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=002-107-G06, 002-172-F03;Manual Curation=February 3%2C 2016;Literature_PMID=15705958,25923523;Oryzabase=608;Expression=AK106528;TENOR=Os04t0469800-01;KEGG=Os04t0469800-01 (EC:1.14.-.-)
Chr04	irgsp1_rep	five_prime_UTR	23471365	23471592	.	-	.	Parent=Os04t0469800-01
Chr04	irgsp1_rep	CDS	23471156	23471364	.	-	0	Parent=Os04t0469800-01
Chr04	irgsp1_rep	CDS	23470453	23470798	.	-	1	Parent=Os04t0469800-01
Chr04	irgsp1_rep	CDS	23470069	23470223	.	-	0	Parent=Os04t0469800-01
Chr04	irgsp1_rep	CDS	23469715	23469949	.	-	1	Parent=Os04t0469800-01
Chr04	irgsp1_rep	CDS	23469526	23469612	.	-	0	Parent=Os04t0469800-01
Chr04	irgsp1_rep	CDS	23469158	23469236	.	-	0	Parent=Os04t0469800-01
Chr04	irgsp1_rep	CDS	23468865	23468971	.	-	2	Parent=Os04t0469800-01
Chr04	irgsp1_rep	CDS	23468283	23468407	.	-	0	Parent=Os04t0469800-01
Chr04	irgsp1_rep	CDS	23467520	23467619	.	-	1	Parent=Os04t0469800-01
Chr04	irgsp1_rep	three_prime_UTR	23467167	23467519	.	-	.	Parent=Os04t0469800-01
Chr04	irgsp1_rep	mRNA	23467204	23471591	.	-	.	ID=Os04t0469800-02;Name=Os04t0469800-02;Locus_id=Os04g0469800;CGSNL Gene Symbol=D11;CGSNL Gene Name=DWARF SHINKANEAIKOKU OR NOHRIN 28;Oryzabase Gene Symbol Synonym(s)=d11(d8)%2C dwf10%2C d8%2C D11/CYP724B1%2C d11%2C CYP724B1%2C GNS4%2C OsD11%2C PMM1%2C OsPMM1%2C PMM1/D11%2C NBG4%2C OsCPB1%2C CPB1%2C CPB1/D11;Oryzabase Gene Name Synonym(s)=shinkaneaikoku or nohrin 28 dwarf%2C DWARF SHINKANEAIKOKU OR NOHRIN 28%2C OsDWARF11%2C dwarf-11%2C CytoChrome P450 724B1%2C Dwarf protein 11%2C cytoChrome P450 CYP724B1%2C DWARF11%2C grain number and size on Chromosome 4%2C Panicle Morphology Mutant 1%2C Notched Belly Grain 4%2C CLUSTERED PRIMARY BRANCH 1;Note=Similar to OSIGBa0124N08.3 protein.;Transcript_evidence=AK101419 (DDBJ%2C Best hit);ORF_evidence=Q01JN4 (UniProt);GO=Biological Process: iron ion transport (GO:0006826),Biological Process: cellular iron ion homeostasis (GO:0006879),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: ferric iron binding (GO:0008199),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),Bacterioferritin (IPR002024);NIAS_FLcDNA=J033038A11;Oryzabase=608;Expression=AK101419;TENOR=Os04t0469800-02;KEGG=Os04t0469800-02 (EC:1.14.-.-)
Chr04	irgsp1_rep	five_prime_UTR	23471365	23471591	.	-	.	Parent=Os04t0469800-02
Chr04	irgsp1_rep	CDS	23471156	23471364	.	-	0	Parent=Os04t0469800-02
Chr04	irgsp1_rep	CDS	23470453	23470798	.	-	1	Parent=Os04t0469800-02
Chr04	irgsp1_rep	CDS	23470069	23470223	.	-	0	Parent=Os04t0469800-02
Chr04	irgsp1_rep	CDS	23469715	23469949	.	-	1	Parent=Os04t0469800-02
Chr04	irgsp1_rep	CDS	23469517	23469612	.	-	0	Parent=Os04t0469800-02
Chr04	irgsp1_rep	three_prime_UTR	23469158	23469516	.	-	.	Parent=Os04t0469800-02
Chr04	irgsp1_rep	three_prime_UTR	23468865	23468971	.	-	.	Parent=Os04t0469800-02
Chr04	irgsp1_rep	three_prime_UTR	23468283	23468407	.	-	.	Parent=Os04t0469800-02
Chr04	irgsp1_rep	three_prime_UTR	23467204	23467619	.	-	.	Parent=Os04t0469800-02
Chr04	irgsp1_rep	mRNA	23492940	23495299	.	+	.	ID=Os04t0470100-01;Name=Os04t0470100-01;Locus_id=Os04g0470100;Oryzabase Gene Symbol Synonym(s)=OsRab2A1%2C OsRab2;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab2A1;Note=Similar to Small GTP binding protein Rab2.;Transcript_evidence=AK059799 (DDBJ%2C Best hit);ORF_evidence=Q01JN3 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: intracellular protein transport (GO:0006886),Biological Process: nucleocytoplasmic transport (GO:0006913),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Cellular Component: membrane (GO:0016020),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Ran GTPase (IPR002041),Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C Ras type (IPR020849);NIAS_FLcDNA=006-204-F05;Oryzabase=11075;Expression=AK059799;TENOR=Os04t0470100-01;KEGG=Os04t0470100-01
Chr04	irgsp1_rep	five_prime_UTR	23492940	23493078	.	+	.	Parent=Os04t0470100-01
Chr04	irgsp1_rep	CDS	23493079	23493124	.	+	0	Parent=Os04t0470100-01
Chr04	irgsp1_rep	CDS	23493229	23493368	.	+	2	Parent=Os04t0470100-01
Chr04	irgsp1_rep	CDS	23493788	23493870	.	+	0	Parent=Os04t0470100-01
Chr04	irgsp1_rep	CDS	23494015	23494219	.	+	1	Parent=Os04t0470100-01
Chr04	irgsp1_rep	CDS	23494301	23494369	.	+	0	Parent=Os04t0470100-01
Chr04	irgsp1_rep	CDS	23494959	23495051	.	+	0	Parent=Os04t0470100-01
Chr04	irgsp1_rep	three_prime_UTR	23495052	23495299	.	+	.	Parent=Os04t0470100-01
Chr04	irgsp1_rep	mRNA	23496015	23496245	.	-	.	ID=Os04t0470150-00;Name=Os04t0470150-00;Locus_id=Os04g0470150;Note=Hypothetical conserved gene.;Transcript_evidence=EU970910 (DDBJ);ORF_evidence=B8AV53 (UniProt);TENOR=Os04t0470150-00;KEGG=Os04t0470150-00
Chr04	irgsp1_rep	CDS	23496015	23496245	.	-	0	Parent=Os04t0470150-00
Chr04	irgsp1_rep	mRNA	23500031	23502611	.	-	.	ID=Os04t0470300-01;Name=Os04t0470300-01;Locus_id=Os04g0470300;Note=Uncharacterised protein family UPF0136%2C Transmembrane domain containing protein.;Transcript_evidence=AK070483 (DDBJ%2C Best hit);ORF_evidence=Q01JN1 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Uncharacterised protein family UPF0136%2C Transmembrane (IPR005349);NIAS_FLcDNA=J023049G07;TENOR=Os04t0470300-01
Chr04	irgsp1_rep	five_prime_UTR	23502536	23502611	.	-	.	Parent=Os04t0470300-01
Chr04	irgsp1_rep	CDS	23502416	23502535	.	-	0	Parent=Os04t0470300-01
Chr04	irgsp1_rep	CDS	23501476	23501680	.	-	0	Parent=Os04t0470300-01
Chr04	irgsp1_rep	CDS	23500777	23500944	.	-	2	Parent=Os04t0470300-01
Chr04	irgsp1_rep	CDS	23500597	23500643	.	-	2	Parent=Os04t0470300-01
Chr04	irgsp1_rep	CDS	23500479	23500519	.	-	0	Parent=Os04t0470300-01
Chr04	irgsp1_rep	CDS	23500298	23500388	.	-	1	Parent=Os04t0470300-01
Chr04	irgsp1_rep	three_prime_UTR	23500031	23500297	.	-	.	Parent=Os04t0470300-01
Chr04	irgsp1_rep	mRNA	23500035	23502572	.	-	.	ID=Os04t0470300-02;Name=Os04t0470300-02;Locus_id=Os04g0470300;Note=Uncharacterised protein family UPF0136%2C Transmembrane domain containing protein.;Transcript_evidence=AK059742 (DDBJ%2C Best hit);ORF_evidence=Q01JN1 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Uncharacterised protein family UPF0136%2C Transmembrane (IPR005349);NIAS_FLcDNA=006-202-G01;TENOR=Os04t0470300-02
Chr04	irgsp1_rep	five_prime_UTR	23502536	23502572	.	-	.	Parent=Os04t0470300-02
Chr04	irgsp1_rep	CDS	23502416	23502535	.	-	0	Parent=Os04t0470300-02
Chr04	irgsp1_rep	CDS	23501476	23501680	.	-	0	Parent=Os04t0470300-02
Chr04	irgsp1_rep	CDS	23500777	23500944	.	-	2	Parent=Os04t0470300-02
Chr04	irgsp1_rep	CDS	23500597	23500643	.	-	2	Parent=Os04t0470300-02
Chr04	irgsp1_rep	CDS	23500479	23500519	.	-	0	Parent=Os04t0470300-02
Chr04	irgsp1_rep	CDS	23500298	23500388	.	-	1	Parent=Os04t0470300-02
Chr04	irgsp1_rep	three_prime_UTR	23500035	23500297	.	-	.	Parent=Os04t0470300-02
Chr04	irgsp1_rep	mRNA	23506845	23509631	.	+	.	ID=Os04t0470500-00;Name=Os04t0470500-00;Locus_id=Os04g0470500;Note=NB-ARC domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01JN0 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os04t0470500-00;KEGG=Os04t0470500-00
Chr04	irgsp1_rep	CDS	23506845	23509631	.	+	0	Parent=Os04t0470500-00
Chr04	irgsp1_rep	mRNA	23510286	23512025	.	-	.	ID=Os04t0470600-01;Name=Os04t0470600-01;Locus_id=Os04g0470600;RAP-DB Gene Symbol Synonym(s)=OsMYB80;CGSNL Gene Symbol=MYB80;Oryzabase Gene Symbol Synonym(s)=OsMYB80;Oryzabase Gene Name Synonym(s)=MYB80 transcription factor;Note=Transcription factor%2C Regulation of tapetal and pollen development;Transcript_evidence=XM_015779934.1;ORF_evidence=Q7XQN1;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeobox-like domain superfamily (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930);Manual Curation=September 12%2C 2018;Literature_PMID=22086333;Oryzabase=22590;TENOR=Os04t0470600-00
Chr04	irgsp1_rep	five_prime_UTR	23511955	23512025	.	-	.	Parent=Os04t0470600-01
Chr04	irgsp1_rep	CDS	23511822	23511954	.	-	0	Parent=Os04t0470600-01
Chr04	irgsp1_rep	CDS	23511601	23511730	.	-	2	Parent=Os04t0470600-01
Chr04	irgsp1_rep	CDS	23510646	23511501	.	-	1	Parent=Os04t0470600-01
Chr04	irgsp1_rep	three_prime_UTR	23510286	23510645	.	-	.	Parent=Os04t0470600-01
Chr04	irgsp1_rep	mRNA	23511183	23511503	.	+	.	ID=Os04t0470650-00;Name=Os04t0470650-00;Locus_id=Os04g0470650;Note=Hypothetical protein.;Transcript_evidence=EU971393 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0470650-00
Chr04	irgsp1_rep	CDS	23511183	23511503	.	+	0	Parent=Os04t0470650-00
Chr04	irgsp1_rep	mRNA	23512858	23522971	.	-	.	ID=Os04t0470700-01;Name=Os04t0470700-01;Locus_id=Os04g0470700;CGSNL Gene Symbol=AAP7A;CGSNL Gene Name=AMINO ACID PERMEASE 7A;Oryzabase Gene Symbol Synonym(s)=OsAAP7A%2C OsAAP13%2C AAP13;Oryzabase Gene Name Synonym(s)=amino acid permease 7A%2C amino acid permease 13%2C amino acid/auxin permease 13;Note=Amino acid transporter%2C transmembrane family protein.;Transcript_evidence=AK071044 (DDBJ%2C Best hit);ORF_evidence=Q01J66 (UniProt);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=J023081F09;Oryzabase=18497;Expression=AK071044;TENOR=Os04t0470700-01;KEGG=Os04t0470700-01
Chr04	irgsp1_rep	five_prime_UTR	23522865	23522971	.	-	.	Parent=Os04t0470700-01
Chr04	irgsp1_rep	CDS	23522774	23522864	.	-	0	Parent=Os04t0470700-01
Chr04	irgsp1_rep	CDS	23522426	23522662	.	-	2	Parent=Os04t0470700-01
Chr04	irgsp1_rep	CDS	23519948	23520041	.	-	2	Parent=Os04t0470700-01
Chr04	irgsp1_rep	CDS	23514353	23514567	.	-	1	Parent=Os04t0470700-01
Chr04	irgsp1_rep	CDS	23514016	23514149	.	-	2	Parent=Os04t0470700-01
Chr04	irgsp1_rep	CDS	23513684	23513911	.	-	0	Parent=Os04t0470700-01
Chr04	irgsp1_rep	CDS	23513158	23513559	.	-	0	Parent=Os04t0470700-01
Chr04	irgsp1_rep	three_prime_UTR	23512858	23513157	.	-	.	Parent=Os04t0470700-01
Chr04	irgsp1_rep	mRNA	23513188	23515224	.	+	.	ID=Os04t0470801-00;Name=Os04t0470801-00;Locus_id=Os04g0470801;Note=Hypothetical protein.;Transcript_evidence=tplb0036o08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0470801-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	23513188	23513277	.	+	.	Parent=Os04t0470801-00
Chr04	irgsp1_rep	CDS	23513278	23513505	.	+	0	Parent=Os04t0470801-00
Chr04	irgsp1_rep	CDS	23513642	23513876	.	+	0	Parent=Os04t0470801-00
Chr04	irgsp1_rep	CDS	23513979	23514019	.	+	2	Parent=Os04t0470801-00
Chr04	irgsp1_rep	three_prime_UTR	23514020	23514139	.	+	.	Parent=Os04t0470801-00
Chr04	irgsp1_rep	three_prime_UTR	23514343	23514539	.	+	.	Parent=Os04t0470801-00
Chr04	irgsp1_rep	three_prime_UTR	23514849	23515224	.	+	.	Parent=Os04t0470801-00
Chr04	irgsp1_rep	mRNA	23527103	23527678	.	-	.	ID=Os04t0470901-00;Name=Os04t0470901-00;Locus_id=Os04g0470901;Note=Hypothetical gene.;Transcript_evidence=CT836515 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os04t0470901-00;KEGG=Os04t0470901-00
Chr04	irgsp1_rep	five_prime_UTR	23527447	23527678	.	-	.	Parent=Os04t0470901-00
Chr04	irgsp1_rep	CDS	23527171	23527446	.	-	0	Parent=Os04t0470901-00
Chr04	irgsp1_rep	three_prime_UTR	23527103	23527170	.	-	.	Parent=Os04t0470901-00
Chr04	irgsp1_rep	mRNA	23530482	23532361	.	+	.	ID=Os04t0471000-00;Name=Os04t0471000-00;Locus_id=Os04g0471000;CGSNL Gene Symbol=DLN114;CGSNL Gene Name=DLN REPRESSOR 114;Oryzabase Gene Symbol Synonym(s)=OsDLN114;Oryzabase Gene Name Synonym(s)=DLN repressor 114%2C DLN motif protein 114;Note=Similar to H0418A01.4 protein.;Transcript_evidence=AK373382 (DDBJ);ORF_evidence=Q01J64 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);Oryzabase=23192;TENOR=Os04t0471000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	23530482	23530603	.	+	.	Parent=Os04t0471000-00
Chr04	irgsp1_rep	CDS	23530604	23531776	.	+	0	Parent=Os04t0471000-00
Chr04	irgsp1_rep	CDS	23531852	23532361	.	+	0	Parent=Os04t0471000-00
Chr04	irgsp1_rep	mRNA	23536981	23538057	.	-	.	ID=Os04t0471100-00;Name=Os04t0471100-00;Locus_id=Os04g0471100;Note=Similar to H0418A01.5 protein.;Transcript_evidence=BT037367 (DDBJ);ORF_evidence=Q01J63 (UniProt);GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Putative harbinger transposase-derived nuclease (IPR006912);TENOR=Os04t0471100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	23537581	23538057	.	-	.	Parent=Os04t0471100-00
Chr04	irgsp1_rep	CDS	23536981	23537580	.	-	0	Parent=Os04t0471100-00
Chr04	irgsp1_rep	mRNA	23544095	23546859	.	-	.	ID=Os04t0471300-01;Name=Os04t0471300-01;Locus_id=Os04g0471300;CGSNL Gene Symbol=WIP;CGSNL Gene Name=WPP DOMAIN-INTERACTING PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsWIP;Oryzabase Gene Name Synonym(s)=WPP domain-interacting protein;Note=Similar to H0418A01.6 protein.;Transcript_evidence=AK069769 (DDBJ%2C Best hit);ORF_evidence=Q01J62 (UniProt);NIAS_FLcDNA=J023027N05;Oryzabase=23722;Expression=AK069769;TENOR=Os04t0471300-01;KEGG=Os04t0471300-01
Chr04	irgsp1_rep	five_prime_UTR	23546741	23546859	.	-	.	Parent=Os04t0471300-01
Chr04	irgsp1_rep	five_prime_UTR	23545804	23545835	.	-	.	Parent=Os04t0471300-01
Chr04	irgsp1_rep	CDS	23545581	23545803	.	-	0	Parent=Os04t0471300-01
Chr04	irgsp1_rep	CDS	23544265	23544950	.	-	2	Parent=Os04t0471300-01
Chr04	irgsp1_rep	three_prime_UTR	23544095	23544264	.	-	.	Parent=Os04t0471300-01
Chr04	irgsp1_rep	mRNA	23553880	23560611	.	-	.	ID=Os04t0471400-01;Name=Os04t0471400-01;Locus_id=Os04g0471400;Note=Similar to H0418A01.7 protein.;Transcript_evidence=AK100883 (DDBJ%2C Best hit);ORF_evidence=Q01J61 (UniProt);NIAS_FLcDNA=J023127M15;Expression=AK100883;TENOR=Os04t0471400-01;KEGG=Os04t0471400-01
Chr04	irgsp1_rep	five_prime_UTR	23560195	23560611	.	-	.	Parent=Os04t0471400-01
Chr04	irgsp1_rep	five_prime_UTR	23559083	23559273	.	-	.	Parent=Os04t0471400-01
Chr04	irgsp1_rep	CDS	23558940	23559082	.	-	0	Parent=Os04t0471400-01
Chr04	irgsp1_rep	CDS	23557254	23558388	.	-	1	Parent=Os04t0471400-01
Chr04	irgsp1_rep	CDS	23554165	23556606	.	-	0	Parent=Os04t0471400-01
Chr04	irgsp1_rep	three_prime_UTR	23553880	23554164	.	-	.	Parent=Os04t0471400-01
Chr04	irgsp1_rep	mRNA	23553857	23558939	.	-	.	ID=Os04t0471400-02;Name=Os04t0471400-02;Locus_id=Os04g0471400;Note=Similar to H0418A01.7 protein.;Transcript_evidence=AK120756 (DDBJ%2C Best hit);ORF_evidence=Q01J61 (UniProt);NIAS_FLcDNA=J023007B14;Expression=AK120756;TENOR=Os04t0471400-02;KEGG=Os04t0471400-02
Chr04	irgsp1_rep	five_prime_UTR	23558424	23558939	.	-	.	Parent=Os04t0471400-02
Chr04	irgsp1_rep	CDS	23557254	23558423	.	-	0	Parent=Os04t0471400-02
Chr04	irgsp1_rep	CDS	23554165	23556606	.	-	0	Parent=Os04t0471400-02
Chr04	irgsp1_rep	three_prime_UTR	23553857	23554164	.	-	.	Parent=Os04t0471400-02
Chr04	irgsp1_rep	mRNA	23553939	23558029	.	-	.	ID=Os04t0471400-03;Name=Os04t0471400-03;Locus_id=Os04g0471400;Note=Similar to H0418A01.7 protein.;Transcript_evidence=AK099564 (DDBJ%2C Best hit);ORF_evidence=Q01J61 (UniProt);NIAS_FLcDNA=J013034M05;Expression=AK099564;TENOR=Os04t0471400-03;KEGG=Os04t0471400-03
Chr04	irgsp1_rep	five_prime_UTR	23558028	23558029	.	-	.	Parent=Os04t0471400-03
Chr04	irgsp1_rep	CDS	23557254	23558027	.	-	0	Parent=Os04t0471400-03
Chr04	irgsp1_rep	CDS	23554165	23556606	.	-	0	Parent=Os04t0471400-03
Chr04	irgsp1_rep	three_prime_UTR	23553939	23554164	.	-	.	Parent=Os04t0471400-03
Chr04	irgsp1_rep	mRNA	23579872	23587188	.	-	.	ID=Os04t0471700-00;Name=Os04t0471700-00;Locus_id=Os04g0471700;CGSNL Gene Symbol=WRKY35;CGSNL Gene Name=WRKY GENE 35;Oryzabase Gene Symbol Synonym(s)=OsWRKY35;Oryzabase Gene Name Synonym(s)=Rice WRKY gene35;Note=Similar to WRKY10 (WRKY transcription factor 35).;Transcript_evidence=AY341843 (DDBJ%2C Best hit);ORF_evidence=Q01J60 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6548;Expression=AY341843;TENOR=Os04t0471700-00;KEGG=Os04t0471700-00
Chr04	irgsp1_rep	five_prime_UTR	23587169	23587188	.	-	.	Parent=Os04t0471700-00
Chr04	irgsp1_rep	CDS	23586735	23587168	.	-	0	Parent=Os04t0471700-00
Chr04	irgsp1_rep	CDS	23586616	23586690	.	-	1	Parent=Os04t0471700-00
Chr04	irgsp1_rep	CDS	23586214	23586261	.	-	1	Parent=Os04t0471700-00
Chr04	irgsp1_rep	CDS	23584651	23584726	.	-	1	Parent=Os04t0471700-00
Chr04	irgsp1_rep	CDS	23584397	23584456	.	-	0	Parent=Os04t0471700-00
Chr04	irgsp1_rep	CDS	23582865	23583317	.	-	0	Parent=Os04t0471700-00
Chr04	irgsp1_rep	CDS	23582120	23582281	.	-	0	Parent=Os04t0471700-00
Chr04	irgsp1_rep	CDS	23581021	23581874	.	-	0	Parent=Os04t0471700-00
Chr04	irgsp1_rep	CDS	23580765	23580926	.	-	1	Parent=Os04t0471700-00
Chr04	irgsp1_rep	CDS	23580004	23580676	.	-	1	Parent=Os04t0471700-00
Chr04	irgsp1_rep	three_prime_UTR	23579872	23580003	.	-	.	Parent=Os04t0471700-00
Chr04	irgsp1_rep	mRNA	23597779	23599291	.	-	.	ID=Os04t0472100-01;Name=Os04t0472100-01;Locus_id=Os04g0472100;CGSNL Gene Symbol=FLA14;CGSNL Gene Name=FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 14;Oryzabase Gene Symbol Synonym(s)=OsFLA14;Oryzabase Gene Name Synonym(s)=fasciclin-like AGP 14%2C fasciclin-like arabinogalactan protein 14;Note=Hypothetical protein.;Transcript_evidence=AK072952 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J023147P21;Oryzabase=11349;TENOR=Os04t0472100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	23599106	23599291	.	-	0	Parent=Os04t0472100-01
Chr04	irgsp1_rep	CDS	23598093	23598242	.	-	0	Parent=Os04t0472100-01
Chr04	irgsp1_rep	three_prime_UTR	23597779	23598092	.	-	.	Parent=Os04t0472100-01
Chr04	irgsp1_rep	mRNA	23599540	23600705	.	-	.	ID=Os04t0472200-01;Name=Os04t0472200-01;Locus_id=Os04g0472200;CGSNL Gene Symbol=FLA13;CGSNL Gene Name=FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 13;Oryzabase Gene Symbol Synonym(s)=OsFLA13;Oryzabase Gene Name Synonym(s)=fasciclin-like AGP 13%2C fasciclin-like arabinogalactan protein 13;Note=Similar to H0418A01.11 protein.;Transcript_evidence=AK110545 (DDBJ%2C Best hit);ORF_evidence=Q01J57 (UniProt);InterPro=FAS1 domain (IPR000782);NIAS_FLcDNA=002-168-B08;Oryzabase=11348;TENOR=Os04t0472200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	23600634	23600705	.	-	.	Parent=Os04t0472200-01
Chr04	irgsp1_rep	CDS	23599842	23600633	.	-	0	Parent=Os04t0472200-01
Chr04	irgsp1_rep	three_prime_UTR	23599540	23599841	.	-	.	Parent=Os04t0472200-01
Chr04	irgsp1_rep	mRNA	23606790	23610910	.	+	.	ID=Os04t0472300-01;Name=Os04t0472300-01;Locus_id=Os04g0472300;Note=PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain domain containing protein.;Transcript_evidence=AK070339 (DDBJ%2C Best hit);ORF_evidence=XP_002864395.1 (RefSeq);GO=Biological Process: glycerol metabolic process (GO:0006071),Biological Process: lipid metabolic process (GO:0006629),Molecular Function: phosphoric diester hydrolase activity (GO:0008081),Molecular Function: glycerophosphodiester phosphodiesterase activity (GO:0008889);InterPro=Glycerophosphoryl diester phosphodiesterase (IPR004129),PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain (IPR017946);NIAS_FLcDNA=J023048K03;TENOR=Os04t0472300-01;KEGG=Os04t0472300-01
Chr04	irgsp1_rep	five_prime_UTR	23606790	23606906	.	+	.	Parent=Os04t0472300-01
Chr04	irgsp1_rep	CDS	23606907	23607006	.	+	0	Parent=Os04t0472300-01
Chr04	irgsp1_rep	CDS	23607588	23607881	.	+	2	Parent=Os04t0472300-01
Chr04	irgsp1_rep	CDS	23608025	23608140	.	+	2	Parent=Os04t0472300-01
Chr04	irgsp1_rep	CDS	23608233	23608729	.	+	0	Parent=Os04t0472300-01
Chr04	irgsp1_rep	CDS	23608831	23608871	.	+	1	Parent=Os04t0472300-01
Chr04	irgsp1_rep	CDS	23608950	23609237	.	+	2	Parent=Os04t0472300-01
Chr04	irgsp1_rep	CDS	23609335	23609474	.	+	2	Parent=Os04t0472300-01
Chr04	irgsp1_rep	CDS	23609748	23610231	.	+	0	Parent=Os04t0472300-01
Chr04	irgsp1_rep	CDS	23610496	23610758	.	+	2	Parent=Os04t0472300-01
Chr04	irgsp1_rep	three_prime_UTR	23610759	23610910	.	+	.	Parent=Os04t0472300-01
Chr04	irgsp1_rep	mRNA	23608630	23611023	.	+	.	ID=Os04t0472300-02;Name=Os04t0472300-02;Locus_id=Os04g0472300;Note=Hypothetical conserved gene.;Transcript_evidence=AK070336 (DDBJ%2C Best hit);ORF_evidence=Q01J03 (UniProt);GO=Biological Process: glycerol metabolic process (GO:0006071),Biological Process: lipid metabolic process (GO:0006629),Molecular Function: phosphoric diester hydrolase activity (GO:0008081),Molecular Function: glycerophosphodiester phosphodiesterase activity (GO:0008889);InterPro=Glycerophosphoryl diester phosphodiesterase (IPR004129),PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain (IPR017946);NIAS_FLcDNA=J023047B14;Expression=AK070336;TENOR=Os04t0472300-02;KEGG=Os04t0472300-02
Chr04	irgsp1_rep	five_prime_UTR	23608630	23608631	.	+	.	Parent=Os04t0472300-02
Chr04	irgsp1_rep	CDS	23608632	23608729	.	+	0	Parent=Os04t0472300-02
Chr04	irgsp1_rep	CDS	23608831	23608871	.	+	1	Parent=Os04t0472300-02
Chr04	irgsp1_rep	CDS	23608950	23609237	.	+	2	Parent=Os04t0472300-02
Chr04	irgsp1_rep	CDS	23609335	23609474	.	+	2	Parent=Os04t0472300-02
Chr04	irgsp1_rep	CDS	23609748	23610231	.	+	0	Parent=Os04t0472300-02
Chr04	irgsp1_rep	CDS	23610496	23610758	.	+	2	Parent=Os04t0472300-02
Chr04	irgsp1_rep	three_prime_UTR	23610759	23611023	.	+	.	Parent=Os04t0472300-02
Chr04	irgsp1_rep	mRNA	23607586	23610242	.	-	.	ID=Os04t0472333-00;Name=Os04t0472333-00;Locus_id=Os04g0472333;Note=Hypothetical protein.;Transcript_evidence=tplb0061g09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0472333-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	23609786	23610242	.	-	.	Parent=Os04t0472333-00
Chr04	irgsp1_rep	CDS	23609746	23609785	.	-	0	Parent=Os04t0472333-00
Chr04	irgsp1_rep	CDS	23609323	23609472	.	-	2	Parent=Os04t0472333-00
Chr04	irgsp1_rep	CDS	23609149	23609228	.	-	2	Parent=Os04t0472333-00
Chr04	irgsp1_rep	three_prime_UTR	23608928	23609148	.	-	.	Parent=Os04t0472333-00
Chr04	irgsp1_rep	three_prime_UTR	23608239	23608746	.	-	.	Parent=Os04t0472333-00
Chr04	irgsp1_rep	three_prime_UTR	23607988	23608143	.	-	.	Parent=Os04t0472333-00
Chr04	irgsp1_rep	three_prime_UTR	23607586	23607840	.	-	.	Parent=Os04t0472333-00
Chr04	irgsp1_rep	mRNA	23623103	23623723	.	+	.	ID=Os04t0472400-00;Name=Os04t0472400-00;Locus_id=Os04g0472400;Note=Similar to RNA recognition motif family protein.;Transcript_evidence=CT831277 (DDBJ%2C Best hit);ORF_evidence=NP_001148871.1 (RefSeq);TENOR=Os04t0472400-00;KEGG=Os04t0472400-00
Chr04	irgsp1_rep	CDS	23623103	23623390	.	+	0	Parent=Os04t0472400-00
Chr04	irgsp1_rep	three_prime_UTR	23623391	23623723	.	+	.	Parent=Os04t0472400-00
Chr04	irgsp1_rep	mRNA	23626693	23629799	.	+	.	ID=Os04t0472500-00;Name=Os04t0472500-00;Locus_id=Os04g0472500;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK370163 (DDBJ);ORF_evidence=Q01IK9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441);TENOR=Os04t0472500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	23626693	23626732	.	+	.	Parent=Os04t0472500-00
Chr04	irgsp1_rep	CDS	23626733	23628983	.	+	0	Parent=Os04t0472500-00
Chr04	irgsp1_rep	CDS	23629414	23629784	.	+	2	Parent=Os04t0472500-00
Chr04	irgsp1_rep	three_prime_UTR	23629785	23629799	.	+	.	Parent=Os04t0472500-00
Chr04	irgsp1_rep	mRNA	23630061	23630369	.	-	.	ID=Os04t0472600-01;Name=Os04t0472600-01;Locus_id=Os04g0472600;Oryzabase Gene Symbol Synonym(s)=OsFbox218%2C Os_F0597;Oryzabase Gene Name Synonym(s)=F-box protein 218;Note=Non-protein coding transcript.;Transcript_evidence=AK058824 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-003-H02;Oryzabase=17005;TENOR=Os04t0472600-01
Chr04	irgsp1_rep	exon	23630061	23630369	.	-	.	Parent=Os04t0472600-01
Chr04	irgsp1_rep	mRNA	23632417	23634575	.	+	.	ID=Os04t0472700-00;Name=Os04t0472700-00;Locus_id=Os04g0472700;Note=Similar to H0305E08.4 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01IK7 (UniProt);TENOR=Os04t0472700-00
Chr04	irgsp1_rep	CDS	23632417	23632561	.	+	0	Parent=Os04t0472700-00
Chr04	irgsp1_rep	CDS	23632658	23632738	.	+	2	Parent=Os04t0472700-00
Chr04	irgsp1_rep	CDS	23632824	23633101	.	+	2	Parent=Os04t0472700-00
Chr04	irgsp1_rep	CDS	23634192	23634575	.	+	0	Parent=Os04t0472700-00
Chr04	irgsp1_rep	mRNA	23640853	23643594	.	+	.	ID=Os04t0472900-01;Name=Os04t0472900-01;Locus_id=Os04g0472900;Note=C2 calcium-dependent membrane targeting domain containing protein.;Transcript_evidence=AK110053 (DDBJ%2C Best hit);ORF_evidence=Q01IK6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),Phosphoribosyltransferase C-terminal (IPR013583),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=002-160-D01;TENOR=Os04t0472900-01;KEGG=Os04t0472900-01
Chr04	irgsp1_rep	five_prime_UTR	23640853	23640951	.	+	.	Parent=Os04t0472900-01
Chr04	irgsp1_rep	CDS	23640952	23643519	.	+	0	Parent=Os04t0472900-01
Chr04	irgsp1_rep	three_prime_UTR	23643520	23643594	.	+	.	Parent=Os04t0472900-01
Chr04	irgsp1_rep	mRNA	23650076	23654120	.	-	.	ID=Os04t0473025-00;Name=Os04t0473025-00;Locus_id=Os04g0473025;Note=Similar to NADH-plastoquinone oxidoreductase subunit 2.;Transcript_evidence=P0CC20 (UniProt);ORF_evidence=YP_004222517.1 (RefSeq);GO=Biological Process: ATP synthesis coupled electron transport (GO:0042773),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: NADH dehydrogenase (ubiquinone) activity (GO:0008137);InterPro=NADH:ubiquinone/plastoquinone oxidoreductase (IPR001750);TENOR=Os04t0473025-00
Chr04	irgsp1_rep	CDS	23654048	23654120	.	-	0	Parent=Os04t0473025-00
Chr04	irgsp1_rep	CDS	23653828	23653844	.	-	2	Parent=Os04t0473025-00
Chr04	irgsp1_rep	CDS	23653460	23653631	.	-	0	Parent=Os04t0473025-00
Chr04	irgsp1_rep	CDS	23651350	23651352	.	-	2	Parent=Os04t0473025-00
Chr04	irgsp1_rep	CDS	23650076	23650305	.	-	2	Parent=Os04t0473025-00
Chr04	irgsp1_rep	mRNA	23653624	23654065	.	+	.	ID=Os04t0473150-00;Name=Os04t0473150-00;Locus_id=Os04g0473150;Note=Similar to photosystem II protein D1.;Transcript_evidence=AF363674 (DDBJ);ORF_evidence=NP_039360.1 (RefSeq);GO=Biological Process: photosynthetic electron transport in photosystem II (GO:0009772),Biological Process: photosynthesis%2C light reaction (GO:0019684),Molecular Function: electron transporter%2C transferring electrons within the cyclic electron transport pathway of photosynthesis activity (GO:0045156);InterPro=Photosynthetic reaction centre%2C L/M (IPR000484);TENOR=Os04t0473150-00;KEGG=Os04t0473150-00
Chr04	irgsp1_rep	five_prime_UTR	23653624	23653624	.	+	.	Parent=Os04t0473150-00
Chr04	irgsp1_rep	CDS	23653625	23654032	.	+	0	Parent=Os04t0473150-00
Chr04	irgsp1_rep	three_prime_UTR	23654033	23654065	.	+	.	Parent=Os04t0473150-00
Chr04	irgsp1_rep	mRNA	23660835	23663001	.	-	.	ID=Os04t0473400-01;Name=Os04t0473400-01;Locus_id=Os04g0473400;Oryzabase Gene Symbol Synonym(s)=OsRPL6%2C RPL6;Oryzabase Gene Name Synonym(s)=ribosomal protein L6%2C ribosomal protein large subunit 6;Note=Similar to 60S ribosomal protein L6-B (L17) (YL16) (RP18).;Transcript_evidence=AK067896 (DDBJ%2C Best hit);ORF_evidence=Q01IK4 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L6E (IPR000915),Ribosomal protein L6%2C N-terminal (IPR005568),Translation protein SH3-like%2C subgroup (IPR014722);NIAS_FLcDNA=J013123D20;Oryzabase=22192;Expression=AK067896;TENOR=Os04t0473400-01;KEGG=Os04t0473400-01
Chr04	irgsp1_rep	five_prime_UTR	23662949	23663001	.	-	.	Parent=Os04t0473400-01
Chr04	irgsp1_rep	CDS	23662725	23662948	.	-	0	Parent=Os04t0473400-01
Chr04	irgsp1_rep	CDS	23662521	23662627	.	-	1	Parent=Os04t0473400-01
Chr04	irgsp1_rep	CDS	23661292	23661473	.	-	2	Parent=Os04t0473400-01
Chr04	irgsp1_rep	CDS	23661045	23661200	.	-	0	Parent=Os04t0473400-01
Chr04	irgsp1_rep	three_prime_UTR	23660835	23661044	.	-	.	Parent=Os04t0473400-01
Chr04	irgsp1_rep	mRNA	23697370	23697895	.	-	.	ID=Os04t0473800-01;Name=Os04t0473800-01;Locus_id=Os04g0473800;RAP-DB Gene Symbol Synonym(s)=FCP1%2C FCP1/OsCLE402%2C Os CLE402%2C OsCLE402;RAP-DB Gene Name Synonym(s)=FON2-LIKE CLE PROTEIN1;Oryzabase Gene Symbol Synonym(s)=FCP1%2C FCP1/Os CLE402%2C Os CLE402%2C OsCLE402;Oryzabase Gene Name Synonym(s)=FON2-LIKE CLE PROTEIN1%2C CLV3/ESR-related 402%2C CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 402;Note=Protein with similar CLE domain%2C Meristem maintenance;Transcript_evidence=AB354584;ORF_evidence=A8R3N9;Manual Curation=April 9%2C 2014;Literature_PMID=23371950,18676878;Oryzabase=12271;TENOR=Os04t0473800-00
Chr04	irgsp1_rep	CDS	23697751	23697895	.	-	0	Parent=Os04t0473800-01
Chr04	irgsp1_rep	CDS	23697600	23697685	.	-	2	Parent=Os04t0473800-01
Chr04	irgsp1_rep	CDS	23697370	23697498	.	-	0	Parent=Os04t0473800-01
Chr04	irgsp1_rep	mRNA	23698662	23707348	.	-	.	ID=Os04t0473900-01;Name=Os04t0473900-01;Locus_id=Os04g0473900;RAP-DB Gene Symbol Synonym(s)=DWA1;RAP-DB Gene Name Synonym(s)=DROUGHT-INDUCED WAX ACCUMULATION 1%2C Drought-Induced Wax Accumulation 1;CGSNL Gene Symbol=DWA1;CGSNL Gene Name=DROUGHT-INDUCED WAX ACCUMULATION 1;Oryzabase Gene Symbol Synonym(s)=DWA1;Oryzabase Gene Name Synonym(s)=Drought-Induced Wax Accumulation 1;Note=Megaenzyme-like protein%2C Drought resistance%2C Regulation of drought-induced cuticular wax deposition;Transcript_evidence=Inferred from literature;ORF_evidence=Q7XR12;GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: catalase activity (GO:0004096),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: heme binding (GO:0020037),Molecular Function: phosphopantetheine binding (GO:0031177);InterPro=Catalase%2C mono-functional%2C haem-containing (IPR018028),FAD/NAD(P)-binding domain (IPR023753),AMP-dependent synthetase/ligase (IPR000873),Acyl carrier protein-like (IPR009081),Polyketide synthase%2C phosphopantetheine-binding domain (IPR020806),Trimeric LpxA-like (IPR011004),Catalase-like domain (IPR020835),Catalase core domain (IPR011614),AMP-binding%2C conserved site (IPR020845),Phosphopantetheine attachment site (IPR006162);Manual Curation=March 17%2C 2016;Literature_PMID=24127586;Oryzabase=15278;TENOR=Os04t0473900-00
Chr04	irgsp1_rep	CDS	23707147	23707348	.	-	0	Parent=Os04t0473900-01
Chr04	irgsp1_rep	CDS	23706867	23707000	.	-	2	Parent=Os04t0473900-01
Chr04	irgsp1_rep	CDS	23706313	23706754	.	-	0	Parent=Os04t0473900-01
Chr04	irgsp1_rep	CDS	23705868	23706227	.	-	2	Parent=Os04t0473900-01
Chr04	irgsp1_rep	CDS	23705609	23705787	.	-	2	Parent=Os04t0473900-01
Chr04	irgsp1_rep	CDS	23702242	23705511	.	-	0	Parent=Os04t0473900-01
Chr04	irgsp1_rep	CDS	23698938	23701526	.	-	0	Parent=Os04t0473900-01
Chr04	irgsp1_rep	three_prime_UTR	23698662	23698937	.	-	.	Parent=Os04t0473900-01
Chr04	irgsp1_rep	mRNA	23715504	23721730	.	-	.	ID=Os04t0474300-01;Name=Os04t0474300-01;Locus_id=Os04g0474300;CGSNL Gene Symbol=BGLU9;CGSNL Gene Name=BETA-GLUCOSIDASE 9;Oryzabase Gene Symbol Synonym(s)=Os4bglu9%2C Os4BGlu9;Oryzabase Gene Name Synonym(s)=beta-glucosidase 9;Note=Glycoside hydrolase%2C family 1 protein.;Transcript_evidence=AK066908 (DDBJ%2C Best hit);ORF_evidence=Q01KA9 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 1%2C active site (IPR018120);NIAS_FLcDNA=J013092D04;Oryzabase=12084;Expression=AK066908;TENOR=Os04t0474300-01;KEGG=Os04t0474300-01 (EC:3.2.1.21)
Chr04	irgsp1_rep	five_prime_UTR	23721691	23721730	.	-	.	Parent=Os04t0474300-01
Chr04	irgsp1_rep	CDS	23721523	23721690	.	-	0	Parent=Os04t0474300-01
Chr04	irgsp1_rep	CDS	23719533	23719602	.	-	0	Parent=Os04t0474300-01
Chr04	irgsp1_rep	CDS	23719370	23719455	.	-	2	Parent=Os04t0474300-01
Chr04	irgsp1_rep	three_prime_UTR	23718633	23719369	.	-	.	Parent=Os04t0474300-01
Chr04	irgsp1_rep	three_prime_UTR	23716967	23718203	.	-	.	Parent=Os04t0474300-01
Chr04	irgsp1_rep	three_prime_UTR	23716295	23716897	.	-	.	Parent=Os04t0474300-01
Chr04	irgsp1_rep	three_prime_UTR	23715941	23716049	.	-	.	Parent=Os04t0474300-01
Chr04	irgsp1_rep	three_prime_UTR	23715504	23715855	.	-	.	Parent=Os04t0474300-01
Chr04	irgsp1_rep	mRNA	23727465	23731790	.	+	.	ID=Os04t0474432-01;Name=Os04t0474432-01;Locus_id=Os04g0474432;Note=Non-protein coding transcript.;Transcript_evidence=AK241822 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065212G12;TENOR=Os04t0474432-01
Chr04	irgsp1_rep	exon	23727465	23727769	.	+	.	Parent=Os04t0474432-01
Chr04	irgsp1_rep	exon	23730970	23731217	.	+	.	Parent=Os04t0474432-01
Chr04	irgsp1_rep	exon	23731343	23731790	.	+	.	Parent=Os04t0474432-01
Chr04	irgsp1_rep	mRNA	23727976	23733621	.	-	.	ID=Os04t0474500-01;Name=Os04t0474500-01;Locus_id=Os04g0474500;RAP-DB Gene Symbol Synonym(s)=Os4BGlu10;RAP-DB Gene Name Synonym(s)=&beta%3B-Glucosidase 10%2C beta-glucosidase 10;CGSNL Gene Symbol=BGLU10;CGSNL Gene Name=BETA-GLUCOSIDASE 10;Oryzabase Gene Symbol Synonym(s)=Os4bglu10%2C Os4BGlu10;Oryzabase Gene Name Synonym(s)=beta-glucosidase 10;Note=Glycosyl hydrolase family 1 (GH1) beta-glucosidase%2C Seed germination%2C Root elongation%2C Drought tolerance;Transcript_evidence=AK065793;ORF_evidence=Q7F9K4;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase superfamily (IPR017853),Glycoside hydrolase family 1 (IPR001360),Glycosyl hydrolases family 1%2C N-terminal conserved site (IPR033132);NIAS_FLcDNA=J013041M21;Manual Curation=February 5%2C 2020;Literature_PMID=30848355;Oryzabase=12083;Expression=AK065793;TENOR=Os04t0474500-01;KEGG=Os04t0474500-01 (EC:3.2.1.21);B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	23733520	23733621	.	-	.	Parent=Os04t0474500-01
Chr04	irgsp1_rep	CDS	23733361	23733519	.	-	0	Parent=Os04t0474500-01
Chr04	irgsp1_rep	CDS	23732871	23732940	.	-	0	Parent=Os04t0474500-01
Chr04	irgsp1_rep	CDS	23732738	23732796	.	-	2	Parent=Os04t0474500-01
Chr04	irgsp1_rep	CDS	23732170	23732245	.	-	0	Parent=Os04t0474500-01
Chr04	irgsp1_rep	CDS	23731847	23731924	.	-	2	Parent=Os04t0474500-01
Chr04	irgsp1_rep	CDS	23731650	23731737	.	-	2	Parent=Os04t0474500-01
Chr04	irgsp1_rep	CDS	23730962	23731286	.	-	1	Parent=Os04t0474500-01
Chr04	irgsp1_rep	CDS	23729810	23729925	.	-	0	Parent=Os04t0474500-01
Chr04	irgsp1_rep	CDS	23729523	23729740	.	-	1	Parent=Os04t0474500-01
Chr04	irgsp1_rep	CDS	23729033	23729064	.	-	2	Parent=Os04t0474500-01
Chr04	irgsp1_rep	CDS	23728838	23728940	.	-	0	Parent=Os04t0474500-01
Chr04	irgsp1_rep	CDS	23728504	23728612	.	-	2	Parent=Os04t0474500-01
Chr04	irgsp1_rep	CDS	23728247	23728415	.	-	1	Parent=Os04t0474500-01
Chr04	irgsp1_rep	three_prime_UTR	23727976	23728246	.	-	.	Parent=Os04t0474500-01
Chr04	irgsp1_rep	mRNA	23730488	23733589	.	-	.	ID=Os04t0474500-02;Name=Os04t0474500-02;Locus_id=Os04g0474500;CGSNL Gene Symbol=BGLU10;CGSNL Gene Name=BETA-GLUCOSIDASE 10;Oryzabase Gene Symbol Synonym(s)=Os4bglu10%2C Os4BGlu10;Oryzabase Gene Name Synonym(s)=beta-glucosidase 10;Note=Similar to OSIGBa0135C13.5 protein.;Transcript_evidence=AK068304 (DDBJ%2C Best hit);ORF_evidence=Q7F9K4 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 1%2C active site (IPR018120);NIAS_FLcDNA=J013145J04;Oryzabase=12083;Expression=AK068304;TENOR=Os04t0474500-02;KEGG=Os04t0474500-02
Chr04	irgsp1_rep	five_prime_UTR	23733520	23733589	.	-	.	Parent=Os04t0474500-02
Chr04	irgsp1_rep	CDS	23733361	23733519	.	-	0	Parent=Os04t0474500-02
Chr04	irgsp1_rep	CDS	23732842	23732940	.	-	0	Parent=Os04t0474500-02
Chr04	irgsp1_rep	three_prime_UTR	23731847	23732841	.	-	.	Parent=Os04t0474500-02
Chr04	irgsp1_rep	three_prime_UTR	23731650	23731737	.	-	.	Parent=Os04t0474500-02
Chr04	irgsp1_rep	three_prime_UTR	23730488	23731297	.	-	.	Parent=Os04t0474500-02
Chr04	irgsp1_rep	mRNA	23728128	23733575	.	-	.	ID=Os04t0474500-03;Name=Os04t0474500-03;Locus_id=Os04g0474500;CGSNL Gene Symbol=BGLU10;CGSNL Gene Name=BETA-GLUCOSIDASE 10;Oryzabase Gene Symbol Synonym(s)=Os4bglu10%2C Os4BGlu10;Oryzabase Gene Name Synonym(s)=beta-glucosidase 10;Note=Similar to Cyanogenic beta-glucosidase precursor (EC 3.2.1.21) (Linamarase) (Fragment).;Transcript_evidence=AK062029 (DDBJ%2C Best hit);ORF_evidence=Q7F9K4 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 1%2C active site (IPR018120);NIAS_FLcDNA=001-043-G08;Oryzabase=12083;Expression=AK062029;TENOR=Os04t0474500-03;KEGG=Os04t0474500-03 (EC:3.2.1.21)
Chr04	irgsp1_rep	five_prime_UTR	23733520	23733575	.	-	.	Parent=Os04t0474500-03
Chr04	irgsp1_rep	CDS	23733361	23733519	.	-	0	Parent=Os04t0474500-03
Chr04	irgsp1_rep	CDS	23732871	23732940	.	-	0	Parent=Os04t0474500-03
Chr04	irgsp1_rep	CDS	23732738	23732796	.	-	2	Parent=Os04t0474500-03
Chr04	irgsp1_rep	CDS	23732170	23732245	.	-	0	Parent=Os04t0474500-03
Chr04	irgsp1_rep	CDS	23731847	23731924	.	-	2	Parent=Os04t0474500-03
Chr04	irgsp1_rep	CDS	23731650	23731737	.	-	2	Parent=Os04t0474500-03
Chr04	irgsp1_rep	CDS	23730963	23731286	.	-	1	Parent=Os04t0474500-03
Chr04	irgsp1_rep	CDS	23729898	23729925	.	-	1	Parent=Os04t0474500-03
Chr04	irgsp1_rep	three_prime_UTR	23729810	23729897	.	-	.	Parent=Os04t0474500-03
Chr04	irgsp1_rep	three_prime_UTR	23729523	23729740	.	-	.	Parent=Os04t0474500-03
Chr04	irgsp1_rep	three_prime_UTR	23729033	23729064	.	-	.	Parent=Os04t0474500-03
Chr04	irgsp1_rep	three_prime_UTR	23728838	23728940	.	-	.	Parent=Os04t0474500-03
Chr04	irgsp1_rep	three_prime_UTR	23728504	23728612	.	-	.	Parent=Os04t0474500-03
Chr04	irgsp1_rep	three_prime_UTR	23728128	23728415	.	-	.	Parent=Os04t0474500-03
Chr04	irgsp1_rep	mRNA	23731897	23733945	.	+	.	ID=Os04t0474550-01;Name=Os04t0474550-01;Locus_id=Os04g0474550;Note=Hypothetical protein.;Transcript_evidence=AK073031 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023147F20;Expression=AK073031;TENOR=Os04t0474550-01;KEGG=Os04t0474550-01
Chr04	irgsp1_rep	five_prime_UTR	23731897	23732015	.	+	.	Parent=Os04t0474550-01
Chr04	irgsp1_rep	CDS	23732016	23732264	.	+	0	Parent=Os04t0474550-01
Chr04	irgsp1_rep	three_prime_UTR	23732265	23733945	.	+	.	Parent=Os04t0474550-01
Chr04	irgsp1_rep	mRNA	23735317	23742375	.	-	.	ID=Os04t0474700-01;Name=Os04t0474700-01;Locus_id=Os04g0474700;CGSNL Gene Symbol=BGLU11;CGSNL Gene Name=BETA-GLUCOSIDASE 11;Oryzabase Gene Symbol Synonym(s)=Os4bglu11%2C Os4BGlu11;Oryzabase Gene Name Synonym(s)=beta-glucosidase 11;Note=Similar to OSIGBa0135C13.6 protein.;Transcript_evidence=AK242955 (DDBJ%2C Best hit);ORF_evidence=Q7XKV5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 1%2C active site (IPR018120);NIAS_FLcDNA=J090089B01;Oryzabase=12086;TENOR=Os04t0474700-01;KEGG=Os04t0474700-01
Chr04	irgsp1_rep	five_prime_UTR	23742357	23742375	.	-	.	Parent=Os04t0474700-01
Chr04	irgsp1_rep	CDS	23742195	23742356	.	-	0	Parent=Os04t0474700-01
Chr04	irgsp1_rep	CDS	23741273	23741342	.	-	0	Parent=Os04t0474700-01
Chr04	irgsp1_rep	CDS	23741138	23741196	.	-	2	Parent=Os04t0474700-01
Chr04	irgsp1_rep	CDS	23740862	23740937	.	-	0	Parent=Os04t0474700-01
Chr04	irgsp1_rep	CDS	23740603	23740680	.	-	2	Parent=Os04t0474700-01
Chr04	irgsp1_rep	CDS	23740381	23740468	.	-	2	Parent=Os04t0474700-01
Chr04	irgsp1_rep	CDS	23739188	23739511	.	-	1	Parent=Os04t0474700-01
Chr04	irgsp1_rep	CDS	23738006	23738155	.	-	1	Parent=Os04t0474700-01
Chr04	irgsp1_rep	CDS	23736750	23736777	.	-	1	Parent=Os04t0474700-01
Chr04	irgsp1_rep	three_prime_UTR	23736662	23736749	.	-	.	Parent=Os04t0474700-01
Chr04	irgsp1_rep	three_prime_UTR	23736375	23736592	.	-	.	Parent=Os04t0474700-01
Chr04	irgsp1_rep	three_prime_UTR	23736236	23736267	.	-	.	Parent=Os04t0474700-01
Chr04	irgsp1_rep	three_prime_UTR	23736039	23736141	.	-	.	Parent=Os04t0474700-01
Chr04	irgsp1_rep	three_prime_UTR	23735718	23735826	.	-	.	Parent=Os04t0474700-01
Chr04	irgsp1_rep	three_prime_UTR	23735317	23735632	.	-	.	Parent=Os04t0474700-01
Chr04	irgsp1_rep	mRNA	23749507	23752765	.	-	.	ID=Os04t0474800-01;Name=Os04t0474800-01;Locus_id=Os04g0474800;CGSNL Gene Symbol=BGLU12;CGSNL Gene Name=BETA-GLUCOSIDASE 12;Oryzabase Gene Symbol Synonym(s)=Os4bglu12%2C Os4BGlu12%2C 4BGlu12%2C OsTAGG2%2C TAGG2;Oryzabase Gene Name Synonym(s)=beta-glucosidase 12%2C tuberonic acid glucoside beta-glucosidase 2%2C tuberonic acid glucoside hydrolyzing beta-glucosidase 2;Note=Similar to OSIGBa0135C13.7 protein.;Transcript_evidence=AK105375 (DDBJ%2C Best hit);ORF_evidence=Q7XKV4 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 1%2C active site (IPR018120);NIAS_FLcDNA=001-120-D10;Oryzabase=12085;Expression=AK105375;TENOR=Os04t0474800-01;KEGG=Os04t0474800-01 (EC:3.2.1.21)
Chr04	irgsp1_rep	five_prime_UTR	23752735	23752765	.	-	.	Parent=Os04t0474800-01
Chr04	irgsp1_rep	CDS	23752576	23752734	.	-	0	Parent=Os04t0474800-01
Chr04	irgsp1_rep	CDS	23752197	23752266	.	-	0	Parent=Os04t0474800-01
Chr04	irgsp1_rep	CDS	23751193	23751251	.	-	2	Parent=Os04t0474800-01
Chr04	irgsp1_rep	CDS	23750867	23750942	.	-	0	Parent=Os04t0474800-01
Chr04	irgsp1_rep	CDS	23750596	23750673	.	-	2	Parent=Os04t0474800-01
Chr04	irgsp1_rep	CDS	23750387	23750474	.	-	2	Parent=Os04t0474800-01
Chr04	irgsp1_rep	CDS	23749702	23749978	.	-	1	Parent=Os04t0474800-01
Chr04	irgsp1_rep	three_prime_UTR	23749507	23749701	.	-	.	Parent=Os04t0474800-01
Chr04	irgsp1_rep	mRNA	23747601	23750728	.	-	.	ID=Os04t0474800-02;Name=Os04t0474800-02;Locus_id=Os04g0474800;CGSNL Gene Symbol=BGLU12;CGSNL Gene Name=BETA-GLUCOSIDASE 12;Oryzabase Gene Symbol Synonym(s)=Os4bglu12%2C Os4BGlu12%2C 4BGlu12%2C OsTAGG2%2C TAGG2;Oryzabase Gene Name Synonym(s)=beta-glucosidase 12%2C tuberonic acid glucoside beta-glucosidase 2%2C tuberonic acid glucoside hydrolyzing beta-glucosidase 2;Note=Similar to Isoform 2 of Beta-glucosidase 12.;Transcript_evidence=AK100820 (DDBJ%2C Best hit);ORF_evidence=Q7XKV4-2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J023122G03;Oryzabase=12085;TENOR=Os04t0474800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	23750681	23750728	.	-	.	Parent=Os04t0474800-02
Chr04	irgsp1_rep	CDS	23750596	23750680	.	-	0	Parent=Os04t0474800-02
Chr04	irgsp1_rep	CDS	23750387	23750474	.	-	2	Parent=Os04t0474800-02
Chr04	irgsp1_rep	CDS	23749723	23749978	.	-	1	Parent=Os04t0474800-02
Chr04	irgsp1_rep	CDS	23748990	23749105	.	-	0	Parent=Os04t0474800-02
Chr04	irgsp1_rep	CDS	23748692	23748909	.	-	1	Parent=Os04t0474800-02
Chr04	irgsp1_rep	CDS	23748449	23748480	.	-	2	Parent=Os04t0474800-02
Chr04	irgsp1_rep	CDS	23748256	23748358	.	-	0	Parent=Os04t0474800-02
Chr04	irgsp1_rep	CDS	23747984	23748092	.	-	2	Parent=Os04t0474800-02
Chr04	irgsp1_rep	CDS	23747723	23747891	.	-	1	Parent=Os04t0474800-02
Chr04	irgsp1_rep	three_prime_UTR	23747601	23747722	.	-	.	Parent=Os04t0474800-02
Chr04	irgsp1_rep	mRNA	23747600	23752774	.	-	.	ID=Os04t0474800-03;Name=Os04t0474800-03;Locus_id=Os04g0474800;RAP-DB Gene Symbol Synonym(s)=OsTAGG2%2C Os4BGlu12;RAP-DB Gene Name Synonym(s)=beta-glucosidase 12%2C tuberonic acid glucoside beta-glucosidase 2;CGSNL Gene Symbol=BGLU12;CGSNL Gene Name=BETA-GLUCOSIDASE 12;Oryzabase Gene Symbol Synonym(s)=Os4bglu12%2C Os4BGlu12%2C 4BGlu12%2C OsTAGG2%2C TAGG2;Oryzabase Gene Name Synonym(s)=beta-glucosidase 12%2C tuberonic acid glucoside beta-glucosidase 2%2C tuberonic acid glucoside hydrolyzing beta-glucosidase 2;Note=&beta%3B-glucosidase;Transcript_evidence=AK062776 (truncated),XM_015781111;ORF_evidence=Q7XKV4;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase superfamily (IPR017853),Glycoside hydrolase family 1 (IPR001360),Glycosyl hydrolases family 1%2C N-terminal conserved site (IPR033132);Manual Curation=July 29%2C 2020;Literature_PMID=23649259;Oryzabase=12085;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	23752735	23752774	.	-	.	Parent=Os04t0474800-03
Chr04	irgsp1_rep	CDS	23752576	23752734	.	-	0	Parent=Os04t0474800-03
Chr04	irgsp1_rep	CDS	23752197	23752266	.	-	0	Parent=Os04t0474800-03
Chr04	irgsp1_rep	CDS	23751193	23751251	.	-	2	Parent=Os04t0474800-03
Chr04	irgsp1_rep	CDS	23750867	23750942	.	-	0	Parent=Os04t0474800-03
Chr04	irgsp1_rep	CDS	23750596	23750673	.	-	2	Parent=Os04t0474800-03
Chr04	irgsp1_rep	CDS	23750387	23750474	.	-	2	Parent=Os04t0474800-03
Chr04	irgsp1_rep	CDS	23749723	23749978	.	-	1	Parent=Os04t0474800-03
Chr04	irgsp1_rep	CDS	23748990	23749105	.	-	0	Parent=Os04t0474800-03
Chr04	irgsp1_rep	CDS	23748692	23748909	.	-	1	Parent=Os04t0474800-03
Chr04	irgsp1_rep	CDS	23748449	23748480	.	-	2	Parent=Os04t0474800-03
Chr04	irgsp1_rep	CDS	23748256	23748358	.	-	0	Parent=Os04t0474800-03
Chr04	irgsp1_rep	CDS	23747984	23748092	.	-	2	Parent=Os04t0474800-03
Chr04	irgsp1_rep	CDS	23747723	23747891	.	-	1	Parent=Os04t0474800-03
Chr04	irgsp1_rep	three_prime_UTR	23747600	23747722	.	-	.	Parent=Os04t0474800-03
Chr04	irgsp1_rep	mRNA	23762465	23767401	.	-	.	ID=Os04t0474900-01;Name=Os04t0474900-01;Locus_id=Os04g0474900;RAP-DB Gene Symbol Synonym(s)=OsTAGG1%2C Os4BGlu13;RAP-DB Gene Name Synonym(s)=beta-glucosidase 13%2C tuberonic acid glucoside beta-glucosidase 1;CGSNL Gene Symbol=BGLU13;CGSNL Gene Name=BETA-GLUCOSIDASE 13;Oryzabase Gene Symbol Synonym(s)=OsTAGG1%2C TAGG1%2C Os4BGlu13%2C 4BGlu13;Oryzabase Gene Name Synonym(s)=beta-glucosidase 13%2C tuberonic acid glucoside beta-glucosidase 1%2C tuberonic acid glucoside hydrolyzing beta-glucosidase 1;Note=&beta%3B-glucosidase;Transcript_evidence=AK070962;ORF_evidence=Q7XKV2;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase superfamily (IPR017853),Glycoside hydrolase family 1 (IPR001360),Glycosyl hydrolases family 1%2C N-terminal conserved site (IPR033132);NIAS_FLcDNA=J023066D17;Manual Curation=July 29%2C 2020;Literature_PMID=26241499,23649259;Oryzabase=8908;Expression=AK070962;TENOR=Os04t0474900-01;KEGG=Os04t0474900-01 (EC:3.2.1.21)
Chr04	irgsp1_rep	five_prime_UTR	23767380	23767401	.	-	.	Parent=Os04t0474900-01
Chr04	irgsp1_rep	CDS	23767233	23767379	.	-	0	Parent=Os04t0474900-01
Chr04	irgsp1_rep	CDS	23766880	23766949	.	-	0	Parent=Os04t0474900-01
Chr04	irgsp1_rep	CDS	23766200	23766258	.	-	2	Parent=Os04t0474900-01
Chr04	irgsp1_rep	CDS	23765906	23765981	.	-	0	Parent=Os04t0474900-01
Chr04	irgsp1_rep	CDS	23765653	23765730	.	-	2	Parent=Os04t0474900-01
Chr04	irgsp1_rep	CDS	23765428	23765515	.	-	2	Parent=Os04t0474900-01
Chr04	irgsp1_rep	CDS	23764939	23765194	.	-	1	Parent=Os04t0474900-01
Chr04	irgsp1_rep	CDS	23764307	23764422	.	-	0	Parent=Os04t0474900-01
Chr04	irgsp1_rep	CDS	23764010	23764227	.	-	1	Parent=Os04t0474900-01
Chr04	irgsp1_rep	CDS	23763563	23763594	.	-	2	Parent=Os04t0474900-01
Chr04	irgsp1_rep	CDS	23763370	23763472	.	-	0	Parent=Os04t0474900-01
Chr04	irgsp1_rep	CDS	23763032	23763140	.	-	2	Parent=Os04t0474900-01
Chr04	irgsp1_rep	CDS	23762773	23762941	.	-	1	Parent=Os04t0474900-01
Chr04	irgsp1_rep	three_prime_UTR	23762465	23762772	.	-	.	Parent=Os04t0474900-01
Chr04	irgsp1_rep	mRNA	23769604	23773444	.	-	.	ID=Os04t0475000-01;Name=Os04t0475000-01;Locus_id=Os04g0475000;Note=Hypothetical protein.;Transcript_evidence=AK068631 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013154A01;Expression=AK068631;TENOR=Os04t0475000-01;KEGG=Os04t0475000-01
Chr04	irgsp1_rep	five_prime_UTR	23773352	23773444	.	-	.	Parent=Os04t0475000-01
Chr04	irgsp1_rep	CDS	23773095	23773351	.	-	0	Parent=Os04t0475000-01
Chr04	irgsp1_rep	CDS	23772289	23772427	.	-	1	Parent=Os04t0475000-01
Chr04	irgsp1_rep	three_prime_UTR	23772218	23772288	.	-	.	Parent=Os04t0475000-01
Chr04	irgsp1_rep	three_prime_UTR	23769604	23772088	.	-	.	Parent=Os04t0475000-01
Chr04	irgsp1_rep	mRNA	23770072	23772456	.	+	.	ID=Os04t0475100-00;Name=Os04t0475100-00;Locus_id=Os04g0475100;Note=Similar to OSIGBa0106G07.2 protein.;Transcript_evidence=AK249594 (DDBJ);ORF_evidence=Q01IX1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os04t0475100-00;KEGG=Os04t0475100-00
Chr04	irgsp1_rep	CDS	23770072	23772456	.	+	0	Parent=Os04t0475100-00
Chr04	irgsp1_rep	mRNA	23779181	23781629	.	+	.	ID=Os04t0475200-00;Name=Os04t0475200-00;Locus_id=Os04g0475200;Note=Similar to OSIGBa0106G07.3 protein.;Transcript_evidence=AK249594 (DDBJ);ORF_evidence=Q01IX0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os04t0475200-00;KEGG=Os04t0475200-00
Chr04	irgsp1_rep	CDS	23779181	23781586	.	+	0	Parent=Os04t0475200-00
Chr04	irgsp1_rep	three_prime_UTR	23781587	23781629	.	+	.	Parent=Os04t0475200-00
Chr04	irgsp1_rep	mRNA	23783964	23784823	.	+	.	ID=Os04t0475250-00;Name=Os04t0475250-00;Locus_id=Os04g0475250;Note=Similar to OSIGBa0106G07.4 protein.;Transcript_evidence=BT062311 (DDBJ);ORF_evidence=Q01IY0 (UniProt);InterPro=Brevis radix-like domain (IPR013591);TENOR=Os04t0475250-00;KEGG=Os04t0475250-00
Chr04	irgsp1_rep	CDS	23783964	23784821	.	+	0	Parent=Os04t0475250-00
Chr04	irgsp1_rep	three_prime_UTR	23784822	23784823	.	+	.	Parent=Os04t0475250-00
Chr04	irgsp1_rep	mRNA	23785534	23787991	.	-	.	ID=Os04t0475300-01;Name=Os04t0475300-01;Locus_id=Os04g0475300;Note=Similar to OSIGBa0106G07.5 protein.;Transcript_evidence=AK066351 (DDBJ%2C Best hit);ORF_evidence=Q01IX9 (UniProt);NIAS_FLcDNA=J013064P15;Expression=AK066351;TENOR=Os04t0475300-01;KEGG=Os04t0475300-01
Chr04	irgsp1_rep	five_prime_UTR	23787937	23787991	.	-	.	Parent=Os04t0475300-01
Chr04	irgsp1_rep	CDS	23787406	23787936	.	-	0	Parent=Os04t0475300-01
Chr04	irgsp1_rep	three_prime_UTR	23787396	23787405	.	-	.	Parent=Os04t0475300-01
Chr04	irgsp1_rep	three_prime_UTR	23785534	23787106	.	-	.	Parent=Os04t0475300-01
Chr04	irgsp1_rep	mRNA	23789421	23790269	.	+	.	ID=Os04t0475400-00;Name=Os04t0475400-00;Locus_id=Os04g0475400;CGSNL Gene Symbol=NAC80;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 80;Oryzabase Gene Symbol Synonym(s)=ONAC080%2C ONAC80;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 080%2C NAC domain-containing protein 80;Note=Similar to OSIGBa0106G07.6 protein.;Transcript_evidence=AK372648 (DDBJ);ORF_evidence=Q01IX8 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);Oryzabase=15849;TENOR=Os04t0475400-00;KEGG=Os04t0475400-00
Chr04	irgsp1_rep	CDS	23789421	23790269	.	+	0	Parent=Os04t0475400-00
Chr04	irgsp1_rep	mRNA	23790794	23792871	.	-	.	ID=Os04t0475500-01;Name=Os04t0475500-01;Locus_id=Os04g0475500;RAP-DB Gene Symbol Synonym(s)=OsV4;RAP-DB Gene Name Synonym(s)=virescent 4;Oryzabase Gene Symbol Synonym(s)=OsV4;Oryzabase Gene Name Synonym(s)=virescent 4;Note=Pentatricopeptide repeat (PPR) protein%2C Early chloroplast development under cold stress;Transcript_evidence=AK287573;ORF_evidence=Q0JCE9;NIAS_FLcDNA=J065033I16;Manual Curation=January 26%2C 2017;Literature_PMID=24289830;Oryzabase=15515;TENOR=Os04t0475500-01;Subcellular location=chloroplast (GO:0009507)
Chr04	irgsp1_rep	five_prime_UTR	23792797	23792871	.	-	.	Parent=Os04t0475500-01
Chr04	irgsp1_rep	CDS	23792569	23792796	.	-	0	Parent=Os04t0475500-01
Chr04	irgsp1_rep	CDS	23791156	23791614	.	-	0	Parent=Os04t0475500-01
Chr04	irgsp1_rep	three_prime_UTR	23790794	23791155	.	-	.	Parent=Os04t0475500-01
Chr04	irgsp1_rep	mRNA	23795593	23797531	.	-	.	ID=Os04t0475600-01;Name=Os04t0475600-01;Locus_id=Os04g0475600;Note=2OG-Fe(II) oxygenase domain containing protein.;Transcript_evidence=AK121520 (DDBJ%2C Best hit),AK105400 (DDBJ%2C Best hit);ORF_evidence=Q01IX6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=J033028J23,001-123-C10;TENOR=Os04t0475600-01
Chr04	irgsp1_rep	five_prime_UTR	23797111	23797531	.	-	.	Parent=Os04t0475600-01
Chr04	irgsp1_rep	CDS	23796770	23797110	.	-	0	Parent=Os04t0475600-01
Chr04	irgsp1_rep	CDS	23796352	23796670	.	-	1	Parent=Os04t0475600-01
Chr04	irgsp1_rep	CDS	23795890	23796132	.	-	0	Parent=Os04t0475600-01
Chr04	irgsp1_rep	three_prime_UTR	23795593	23795889	.	-	.	Parent=Os04t0475600-01
Chr04	irgsp1_rep	mRNA	23818561	23819413	.	+	.	ID=Os04t0475900-01;Name=Os04t0475900-01;Locus_id=Os04g0475900;RAP-DB Gene Symbol Synonym(s)=RMS%2C RFcw%2C RFCW%2C Rfcw%2C Rf17;RAP-DB Gene Name Synonym(s)=RETROGRADE-REGULATED MALE STERILITY%2C fertility restorer gene%2C restoration of fertility 17;CGSNL Gene Symbol=RMS;CGSNL Gene Name=RETROGRADE-REGULATED MALE STERILITY;Oryzabase Gene Symbol Synonym(s)=RFcw%2C RFCW%2C Rfcw%2CRf17;Oryzabase Gene Name Synonym(s)=fertility restorer gene%2C restoration of fertility 17;Note=Acyl-carrier protein synthase (ACPS)-like domain containing protein%2C Fertility restoration in Chinese wild rice-type cytoplasmic male sterility (CW-CMS);Transcript_evidence=AK110706,AB481199 (Oryza rufipogon);ORF_evidence=Q0JCE7;NIAS_FLcDNA=002-170-C07;Manual Curation=December 24%2C 2015;Literature_PMID=19458265;Oryzabase=6401;Expression=AK110706;TENOR=Os04t0475900-01;KEGG=Os04t0475900-01
Chr04	irgsp1_rep	five_prime_UTR	23818561	23818776	.	+	.	Parent=Os04t0475900-01
Chr04	irgsp1_rep	CDS	23818777	23819313	.	+	0	Parent=Os04t0475900-01
Chr04	irgsp1_rep	three_prime_UTR	23819314	23819413	.	+	.	Parent=Os04t0475900-01
Chr04	irgsp1_rep	mRNA	23826525	23829341	.	+	.	ID=Os04t0476000-01;Name=Os04t0476000-01;Locus_id=Os04g0476000;Oryzabase Gene Symbol Synonym(s)=Os_F0756;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK287589 (DDBJ%2C Best hit);ORF_evidence=Q01IX3 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Sel1-like (IPR006597),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J065045L09;Oryzabase=17448;TENOR=Os04t0476000-01;KEGG=Os04t0476000-01
Chr04	irgsp1_rep	five_prime_UTR	23826525	23826611	.	+	.	Parent=Os04t0476000-01
Chr04	irgsp1_rep	CDS	23826612	23827266	.	+	0	Parent=Os04t0476000-01
Chr04	irgsp1_rep	CDS	23827582	23827715	.	+	2	Parent=Os04t0476000-01
Chr04	irgsp1_rep	CDS	23828216	23828398	.	+	0	Parent=Os04t0476000-01
Chr04	irgsp1_rep	CDS	23828813	23828986	.	+	0	Parent=Os04t0476000-01
Chr04	irgsp1_rep	three_prime_UTR	23828987	23829341	.	+	.	Parent=Os04t0476000-01
Chr04	irgsp1_rep	mRNA	23829930	23832791	.	-	.	ID=Os04t0476100-01;Name=Os04t0476100-01;Locus_id=Os04g0476100;CGSNL Gene Symbol=DAO4;CGSNL Gene Name=DIAMINE OXIDASE 4;Oryzabase Gene Symbol Synonym(s)=OsDAO4%2C OsCuDAO4%2C CuDAO4;Oryzabase Gene Name Synonym(s)=diamine oxidase 4%2C Copper-containing diamine oxidase 4;Note=Similar to Peroxisomal copper-containing amine oxidase.;Transcript_evidence=AK119759 (DDBJ%2C Best hit);ORF_evidence=Q01IY5 (UniProt);GO=Biological Process: amine metabolic process (GO:0009308),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: copper ion binding (GO:0005507),Molecular Function: primary amine oxidase activity (GO:0008131),Molecular Function: quinone binding (GO:0048038);InterPro=Copper amine oxidase (IPR000269),Copper amine oxidase%2C C-terminal (IPR015798),Copper amine oxidase%2C N2/N3-terminal (IPR015801),Copper amine oxidase%2C N3-terminal (IPR015802),Copper amine oxidase%2C N-terminal (IPR016182);NIAS_FLcDNA=002-171-F12;Oryzabase=21674;Expression=AK119759;TENOR=Os04t0476100-01;KEGG=Os04t0476100-01 (EC:1.4.3.21)
Chr04	irgsp1_rep	five_prime_UTR	23832790	23832791	.	-	.	Parent=Os04t0476100-01
Chr04	irgsp1_rep	CDS	23832484	23832789	.	-	0	Parent=Os04t0476100-01
Chr04	irgsp1_rep	CDS	23832173	23832388	.	-	0	Parent=Os04t0476100-01
Chr04	irgsp1_rep	CDS	23831854	23832090	.	-	0	Parent=Os04t0476100-01
Chr04	irgsp1_rep	CDS	23831419	23831604	.	-	0	Parent=Os04t0476100-01
Chr04	irgsp1_rep	CDS	23831052	23831192	.	-	0	Parent=Os04t0476100-01
Chr04	irgsp1_rep	CDS	23830488	23830756	.	-	0	Parent=Os04t0476100-01
Chr04	irgsp1_rep	CDS	23830320	23830401	.	-	1	Parent=Os04t0476100-01
Chr04	irgsp1_rep	CDS	23830051	23830170	.	-	0	Parent=Os04t0476100-01
Chr04	irgsp1_rep	three_prime_UTR	23829930	23830050	.	-	.	Parent=Os04t0476100-01
Chr04	irgsp1_rep	mRNA	23829769	23832604	.	-	.	ID=Os04t0476100-02;Name=Os04t0476100-02;Locus_id=Os04g0476100;CGSNL Gene Symbol=DAO4;CGSNL Gene Name=DIAMINE OXIDASE 4;Oryzabase Gene Symbol Synonym(s)=OsDAO4%2C OsCuDAO4%2C CuDAO4;Oryzabase Gene Name Synonym(s)=diamine oxidase 4%2C Copper-containing diamine oxidase 4;Note=Similar to OSIGBa0106G07.12 protein.;Transcript_evidence=AK105824 (DDBJ%2C Best hit);ORF_evidence=Q01IY5 (UniProt);GO=Biological Process: amine metabolic process (GO:0009308),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: copper ion binding (GO:0005507),Molecular Function: primary amine oxidase activity (GO:0008131),Molecular Function: quinone binding (GO:0048038);InterPro=Copper amine oxidase (IPR000269),Copper amine oxidase%2C C-terminal (IPR015798);NIAS_FLcDNA=001-203-D10;Oryzabase=21674;Expression=AK105824;TENOR=Os04t0476100-02;KEGG=Os04t0476100-02 (EC:1.4.3.21)
Chr04	irgsp1_rep	five_prime_UTR	23832604	23832604	.	-	.	Parent=Os04t0476100-02
Chr04	irgsp1_rep	CDS	23832484	23832603	.	-	0	Parent=Os04t0476100-02
Chr04	irgsp1_rep	CDS	23832173	23832388	.	-	0	Parent=Os04t0476100-02
Chr04	irgsp1_rep	CDS	23831854	23832090	.	-	0	Parent=Os04t0476100-02
Chr04	irgsp1_rep	CDS	23831419	23831604	.	-	0	Parent=Os04t0476100-02
Chr04	irgsp1_rep	CDS	23831052	23831192	.	-	0	Parent=Os04t0476100-02
Chr04	irgsp1_rep	CDS	23830488	23830756	.	-	0	Parent=Os04t0476100-02
Chr04	irgsp1_rep	CDS	23830320	23830401	.	-	1	Parent=Os04t0476100-02
Chr04	irgsp1_rep	CDS	23830051	23830170	.	-	0	Parent=Os04t0476100-02
Chr04	irgsp1_rep	three_prime_UTR	23829769	23830050	.	-	.	Parent=Os04t0476100-02
Chr04	irgsp1_rep	mRNA	23829786	23831927	.	-	.	ID=Os04t0476100-03;Name=Os04t0476100-03;Locus_id=Os04g0476100;CGSNL Gene Symbol=DAO4;CGSNL Gene Name=DIAMINE OXIDASE 4;Oryzabase Gene Symbol Synonym(s)=OsDAO4%2C OsCuDAO4%2C CuDAO4;Oryzabase Gene Name Synonym(s)=diamine oxidase 4%2C Copper-containing diamine oxidase 4;Note=Similar to OSIGBa0106G07.12 protein.;Transcript_evidence=AK059867 (DDBJ%2C Best hit);ORF_evidence=Q01IY5 (UniProt);GO=Biological Process: amine metabolic process (GO:0009308),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: copper ion binding (GO:0005507),Molecular Function: primary amine oxidase activity (GO:0008131),Molecular Function: quinone binding (GO:0048038);InterPro=Copper amine oxidase (IPR000269),Copper amine oxidase%2C C-terminal (IPR015798);NIAS_FLcDNA=006-207-E02;Oryzabase=21674;Expression=AK059867;TENOR=Os04t0476100-03;KEGG=Os04t0476100-03 (EC:1.4.3.21)
Chr04	irgsp1_rep	five_prime_UTR	23831926	23831927	.	-	.	Parent=Os04t0476100-03
Chr04	irgsp1_rep	CDS	23831854	23831925	.	-	0	Parent=Os04t0476100-03
Chr04	irgsp1_rep	CDS	23831419	23831604	.	-	0	Parent=Os04t0476100-03
Chr04	irgsp1_rep	CDS	23831052	23831192	.	-	0	Parent=Os04t0476100-03
Chr04	irgsp1_rep	CDS	23830488	23830756	.	-	0	Parent=Os04t0476100-03
Chr04	irgsp1_rep	CDS	23830320	23830401	.	-	1	Parent=Os04t0476100-03
Chr04	irgsp1_rep	CDS	23830051	23830170	.	-	0	Parent=Os04t0476100-03
Chr04	irgsp1_rep	three_prime_UTR	23829786	23830050	.	-	.	Parent=Os04t0476100-03
Chr04	irgsp1_rep	mRNA	23843614	23847934	.	+	.	ID=Os04t0476400-01;Name=Os04t0476400-01;Locus_id=Os04g0476400;Note=Similar to OSIGBa0106G07.13 protein.;Transcript_evidence=AK102076 (DDBJ%2C Best hit);ORF_evidence=Q01IY4 (UniProt);GO=Cellular Component: nucleus (GO:0005634);InterPro=Ribonuclease H2%2C subunit B (IPR019024);NIAS_FLcDNA=J033082I06;TENOR=Os04t0476400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	23843614	23843727	.	+	.	Parent=Os04t0476400-01
Chr04	irgsp1_rep	CDS	23843728	23843782	.	+	0	Parent=Os04t0476400-01
Chr04	irgsp1_rep	CDS	23844154	23844210	.	+	2	Parent=Os04t0476400-01
Chr04	irgsp1_rep	CDS	23844375	23844476	.	+	2	Parent=Os04t0476400-01
Chr04	irgsp1_rep	CDS	23844830	23844942	.	+	2	Parent=Os04t0476400-01
Chr04	irgsp1_rep	three_prime_UTR	23844943	23845138	.	+	.	Parent=Os04t0476400-01
Chr04	irgsp1_rep	three_prime_UTR	23845398	23846564	.	+	.	Parent=Os04t0476400-01
Chr04	irgsp1_rep	three_prime_UTR	23847063	23847138	.	+	.	Parent=Os04t0476400-01
Chr04	irgsp1_rep	three_prime_UTR	23847265	23847355	.	+	.	Parent=Os04t0476400-01
Chr04	irgsp1_rep	three_prime_UTR	23847435	23847934	.	+	.	Parent=Os04t0476400-01
Chr04	irgsp1_rep	mRNA	23849353	23853887	.	+	.	ID=Os04t0476500-01;Name=Os04t0476500-01;Locus_id=Os04g0476500;Note=MULE transposase%2C conserved domain domain containing protein.;Transcript_evidence=AK101478 (DDBJ%2C Best hit);ORF_evidence=Q01IY3 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=FAR1 DNA binding domain (IPR004330),Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);NIAS_FLcDNA=J033041A08;Expression=AK101478;TENOR=Os04t0476500-01;KEGG=Os04t0476500-01
Chr04	irgsp1_rep	five_prime_UTR	23849353	23849664	.	+	.	Parent=Os04t0476500-01
Chr04	irgsp1_rep	five_prime_UTR	23850897	23850923	.	+	.	Parent=Os04t0476500-01
Chr04	irgsp1_rep	CDS	23850924	23853335	.	+	0	Parent=Os04t0476500-01
Chr04	irgsp1_rep	three_prime_UTR	23853336	23853354	.	+	.	Parent=Os04t0476500-01
Chr04	irgsp1_rep	three_prime_UTR	23853462	23853887	.	+	.	Parent=Os04t0476500-01
Chr04	irgsp1_rep	mRNA	23849418	23853864	.	+	.	ID=Os04t0476500-02;Name=Os04t0476500-02;Locus_id=Os04g0476500;Note=MULE transposase%2C conserved domain domain containing protein.;Transcript_evidence=AK065827 (DDBJ%2C Best hit);ORF_evidence=Q01IY3 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=FAR1 DNA binding domain (IPR004330),Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);NIAS_FLcDNA=J013040A22;Expression=AK065827;TENOR=Os04t0476500-02;KEGG=Os04t0476500-02
Chr04	irgsp1_rep	five_prime_UTR	23849418	23849664	.	+	.	Parent=Os04t0476500-02
Chr04	irgsp1_rep	five_prime_UTR	23850897	23850923	.	+	.	Parent=Os04t0476500-02
Chr04	irgsp1_rep	CDS	23850924	23853335	.	+	0	Parent=Os04t0476500-02
Chr04	irgsp1_rep	three_prime_UTR	23853336	23853354	.	+	.	Parent=Os04t0476500-02
Chr04	irgsp1_rep	three_prime_UTR	23853462	23853864	.	+	.	Parent=Os04t0476500-02
Chr04	irgsp1_rep	mRNA	23859323	23863234	.	+	.	ID=Os04t0476600-01;Name=Os04t0476600-01;Locus_id=Os04g0476600;Note=C2 calcium-dependent membrane targeting domain containing protein.;Transcript_evidence=AK105466 (DDBJ%2C Best hit);ORF_evidence=Q01IY2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),GRAM (IPR004182),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=001-126-A04;Expression=AK105466;TENOR=Os04t0476600-01;KEGG=Os04t0476600-01
Chr04	irgsp1_rep	five_prime_UTR	23859323	23859323	.	+	.	Parent=Os04t0476600-01
Chr04	irgsp1_rep	CDS	23859324	23859834	.	+	0	Parent=Os04t0476600-01
Chr04	irgsp1_rep	CDS	23859942	23860121	.	+	2	Parent=Os04t0476600-01
Chr04	irgsp1_rep	CDS	23860205	23860491	.	+	2	Parent=Os04t0476600-01
Chr04	irgsp1_rep	CDS	23860580	23860696	.	+	0	Parent=Os04t0476600-01
Chr04	irgsp1_rep	CDS	23860936	23861198	.	+	0	Parent=Os04t0476600-01
Chr04	irgsp1_rep	CDS	23861360	23861528	.	+	1	Parent=Os04t0476600-01
Chr04	irgsp1_rep	CDS	23862133	23862405	.	+	0	Parent=Os04t0476600-01
Chr04	irgsp1_rep	CDS	23862798	23863016	.	+	0	Parent=Os04t0476600-01
Chr04	irgsp1_rep	three_prime_UTR	23863017	23863234	.	+	.	Parent=Os04t0476600-01
Chr04	irgsp1_rep	mRNA	23862188	23863738	.	-	.	ID=Os04t0476650-01;Name=Os04t0476650-01;Locus_id=Os04g0476650;Note=Hypothetical gene.;Transcript_evidence=AK289244 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100076P10;TENOR=Os04t0476650-01;KEGG=Os04t0476650-01
Chr04	irgsp1_rep	five_prime_UTR	23863561	23863738	.	-	.	Parent=Os04t0476650-01
Chr04	irgsp1_rep	CDS	23862787	23863560	.	-	0	Parent=Os04t0476650-01
Chr04	irgsp1_rep	three_prime_UTR	23862188	23862786	.	-	.	Parent=Os04t0476650-01
Chr04	irgsp1_rep	mRNA	23866055	23867132	.	+	.	ID=Os04t0476700-01;Name=Os04t0476700-01;Locus_id=Os04g0476700;Oryzabase Gene Symbol Synonym(s)=OsIRL3%2C IRL3;Oryzabase Gene Name Synonym(s)=intracellular Ras-group-related LRR protein 3;Note=Leucine-rich repeat%2C typical subtype containing protein.;Transcript_evidence=AK071870 (DDBJ%2C Best hit);ORF_evidence=Q7XK44 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591);NIAS_FLcDNA=J023116G14;Oryzabase=14434;Expression=AK071870;TENOR=Os04t0476700-01;KEGG=Os04t0476700-01
Chr04	irgsp1_rep	CDS	23866055	23866221	.	+	0	Parent=Os04t0476700-01
Chr04	irgsp1_rep	CDS	23866298	23866946	.	+	1	Parent=Os04t0476700-01
Chr04	irgsp1_rep	three_prime_UTR	23866947	23867132	.	+	.	Parent=Os04t0476700-01
Chr04	irgsp1_rep	mRNA	23867557	23872076	.	-	.	ID=Os04t0476800-01;Name=Os04t0476800-01;Locus_id=Os04g0476800;Oryzabase Gene Name Synonym(s)=Pbi and ZZ domain DBP protein;Note=Similar to TA5 protein (Fragment).;Transcript_evidence=AK070908 (DDBJ%2C Best hit);ORF_evidence=Q01JY6 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Phox/Bem1p (IPR000270),Zinc finger%2C ZZ-type (IPR000433);NIAS_FLcDNA=J023064I21;Oryzabase=15987;Expression=AK070908;TENOR=Os04t0476800-01;KEGG=Os04t0476800-01
Chr04	irgsp1_rep	five_prime_UTR	23871946	23872076	.	-	.	Parent=Os04t0476800-01
Chr04	irgsp1_rep	CDS	23871883	23871945	.	-	0	Parent=Os04t0476800-01
Chr04	irgsp1_rep	CDS	23869585	23870966	.	-	0	Parent=Os04t0476800-01
Chr04	irgsp1_rep	CDS	23869363	23869477	.	-	1	Parent=Os04t0476800-01
Chr04	irgsp1_rep	CDS	23869055	23869267	.	-	0	Parent=Os04t0476800-01
Chr04	irgsp1_rep	CDS	23868804	23868953	.	-	0	Parent=Os04t0476800-01
Chr04	irgsp1_rep	CDS	23868000	23868713	.	-	0	Parent=Os04t0476800-01
Chr04	irgsp1_rep	CDS	23867901	23867909	.	-	0	Parent=Os04t0476800-01
Chr04	irgsp1_rep	three_prime_UTR	23867557	23867900	.	-	.	Parent=Os04t0476800-01
Chr04	irgsp1_rep	mRNA	23876327	23878830	.	+	.	ID=Os04t0477000-01;Name=Os04t0477000-01;Locus_id=Os04g0477000;Note=BTB/POZ fold domain containing protein.;Transcript_evidence=AK067981 (DDBJ%2C Best hit);ORF_evidence=Q01JY5 (UniProt);GO=Biological Process: response to light stimulus (GO:0009416),Molecular Function: signal transducer activity (GO:0004871);InterPro=NPH3 (IPR004249),BTB/POZ fold (IPR011333);NIAS_FLcDNA=J013126J03;Expression=AK067981;TENOR=Os04t0477000-01;KEGG=Os04t0477000-01
Chr04	irgsp1_rep	five_prime_UTR	23876327	23876524	.	+	.	Parent=Os04t0477000-01
Chr04	irgsp1_rep	CDS	23876525	23876583	.	+	0	Parent=Os04t0477000-01
Chr04	irgsp1_rep	CDS	23876684	23876753	.	+	1	Parent=Os04t0477000-01
Chr04	irgsp1_rep	CDS	23876843	23878060	.	+	0	Parent=Os04t0477000-01
Chr04	irgsp1_rep	CDS	23878170	23878706	.	+	0	Parent=Os04t0477000-01
Chr04	irgsp1_rep	three_prime_UTR	23878707	23878830	.	+	.	Parent=Os04t0477000-01
Chr04	irgsp1_rep	mRNA	23876831	23878695	.	-	.	ID=Os04t0477025-00;Name=Os04t0477025-00;Locus_id=Os04g0477025;Note=Hypothetical gene.;Transcript_evidence=BT060652 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0477025-00;KEGG=Os04t0477025-00
Chr04	irgsp1_rep	five_prime_UTR	23878069	23878695	.	-	.	Parent=Os04t0477025-00
Chr04	irgsp1_rep	CDS	23877388	23878068	.	-	0	Parent=Os04t0477025-00
Chr04	irgsp1_rep	three_prime_UTR	23876831	23877387	.	-	.	Parent=Os04t0477025-00
Chr04	irgsp1_rep	mRNA	23881847	23882350	.	-	.	ID=Os04t0477100-00;Name=Os04t0477100-00;Locus_id=Os04g0477100;Note=Similar to OSIGBa0116M22.4 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01JY4 (UniProt);TENOR=Os04t0477100-00
Chr04	irgsp1_rep	CDS	23881847	23882350	.	-	0	Parent=Os04t0477100-00
Chr04	irgsp1_rep	mRNA	23882661	23885227	.	-	.	ID=Os04t0477200-01;Name=Os04t0477200-01;Locus_id=Os04g0477200;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK072552 (DDBJ%2C Best hit);ORF_evidence=Q7XK39 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J023131B08;TENOR=Os04t0477200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	23885009	23885227	.	-	.	Parent=Os04t0477200-01
Chr04	irgsp1_rep	CDS	23883641	23885008	.	-	0	Parent=Os04t0477200-01
Chr04	irgsp1_rep	three_prime_UTR	23882661	23883640	.	-	.	Parent=Os04t0477200-01
Chr04	irgsp1_rep	mRNA	23883179	23883519	.	-	.	ID=Os04t0477200-02;Name=Os04t0477200-02;Locus_id=Os04g0477200;Note=Non-protein coding transcript.;Transcript_evidence=AK063874 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-122-F01;TENOR=Os04t0477200-02
Chr04	irgsp1_rep	exon	23883179	23883519	.	-	.	Parent=Os04t0477200-02
Chr04	irgsp1_rep	mRNA	23885590	23887923	.	-	.	ID=Os04t0477300-01;Name=Os04t0477300-01;Locus_id=Os04g0477300;CGSNL Gene Symbol=BET1;CGSNL Gene Name=BORON EXCESS TOLERANT 1;Oryzabase Gene Symbol Synonym(s)=BET1%2C ONAC081%2C ONAC81%2C NAC81;Oryzabase Gene Name Synonym(s)=BORON EXCESS TOLERANT1%2C NAC domain-containing protein 081%2C NAC domain-containing protein 81;Note=Similar to OSIGBa0116M22.6 protein.;Transcript_evidence=AK108082 (DDBJ%2C Best hit);ORF_evidence=Q01JY2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=002-138-G10;Oryzabase=9244;TENOR=Os04t0477300-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	23887611	23887923	.	-	.	Parent=Os04t0477300-01
Chr04	irgsp1_rep	five_prime_UTR	23886903	23887089	.	-	.	Parent=Os04t0477300-01
Chr04	irgsp1_rep	five_prime_UTR	23886684	23886807	.	-	.	Parent=Os04t0477300-01
Chr04	irgsp1_rep	CDS	23886315	23886683	.	-	0	Parent=Os04t0477300-01
Chr04	irgsp1_rep	CDS	23886004	23886204	.	-	0	Parent=Os04t0477300-01
Chr04	irgsp1_rep	CDS	23885840	23885896	.	-	0	Parent=Os04t0477300-01
Chr04	irgsp1_rep	three_prime_UTR	23885590	23885839	.	-	.	Parent=Os04t0477300-01
Chr04	irgsp1_rep	mRNA	23885840	23889445	.	-	.	ID=Os04t0477300-02;Name=Os04t0477300-02;Locus_id=Os04g0477300;RAP-DB Gene Symbol Synonym(s)=BET1;RAP-DB Gene Name Synonym(s)=BORON EXCESS TOLERANT1;CGSNL Gene Symbol=BET1;CGSNL Gene Name=BORON EXCESS TOLERANT 1;Oryzabase Gene Symbol Synonym(s)=BET1%2C ONAC081%2C ONAC81%2C NAC81;Oryzabase Gene Name Synonym(s)=BORON EXCESS TOLERANT1%2C NAC domain-containing protein 081%2C NAC domain-containing protein 81;Note=NAC (NAM%2C ATAF%2C and CUC)-like transcription factor%2C Tolerance to boron (B) toxicity (Nipponbare: nonfunctional);Transcript_evidence=AB630331;ORF_evidence=F5HSD4;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=NAC domain superfamily (IPR036093),NAC domain (IPR003441);NIAS_FLcDNA=002-138-G10;Manual Curation=September 7%2C 2020;Literature_PMID=21543724;Oryzabase=9244;TENOR=Os04t0477300-01
Chr04	irgsp1_rep	CDS	23889438	23889445	.	-	0	Parent=Os04t0477300-02
Chr04	irgsp1_rep	CDS	23887611	23887752	.	-	1	Parent=Os04t0477300-02
Chr04	irgsp1_rep	CDS	23886903	23887089	.	-	0	Parent=Os04t0477300-02
Chr04	irgsp1_rep	CDS	23886635	23886807	.	-	2	Parent=Os04t0477300-02
Chr04	irgsp1_rep	three_prime_UTR	23886315	23886634	.	-	.	Parent=Os04t0477300-02
Chr04	irgsp1_rep	three_prime_UTR	23886004	23886204	.	-	.	Parent=Os04t0477300-02
Chr04	irgsp1_rep	three_prime_UTR	23885840	23885896	.	-	.	Parent=Os04t0477300-02
Chr04	irgsp1_rep	mRNA	23893382	23896476	.	-	.	ID=Os04t0477500-01;Name=Os04t0477500-01;Locus_id=Os04g0477500;Oryzabase Gene Symbol Synonym(s)=OsSTA124;Note=Glycosyl transferase%2C family 17 protein.;Transcript_evidence=AK063950 (DDBJ%2C Best hit);ORF_evidence=Q01JY1 (UniProt);GO=Biological Process: protein N-linked glycosylation (GO:0006487),Cellular Component: membrane (GO:0016020),Molecular Function: beta-1%2C4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity (GO:0003830);InterPro=Glycosyl transferase%2C family 17 (IPR006813);NIAS_FLcDNA=001-123-F04;Oryzabase=19414;Expression=AK063950;TENOR=Os04t0477500-01;KEGG=Os04t0477500-01
Chr04	irgsp1_rep	five_prime_UTR	23896188	23896476	.	-	.	Parent=Os04t0477500-01
Chr04	irgsp1_rep	CDS	23896122	23896187	.	-	0	Parent=Os04t0477500-01
Chr04	irgsp1_rep	CDS	23893888	23894988	.	-	0	Parent=Os04t0477500-01
Chr04	irgsp1_rep	three_prime_UTR	23893382	23893887	.	-	.	Parent=Os04t0477500-01
Chr04	irgsp1_rep	mRNA	23892824	23896436	.	-	.	ID=Os04t0477500-02;Name=Os04t0477500-02;Locus_id=Os04g0477500;Oryzabase Gene Symbol Synonym(s)=OsSTA124;Note=Glycosyl transferase%2C family 17 protein.;Transcript_evidence=AK067372 (DDBJ%2C Best hit);ORF_evidence=Q01JY1 (UniProt);GO=Biological Process: protein N-linked glycosylation (GO:0006487),Cellular Component: membrane (GO:0016020),Molecular Function: beta-1%2C4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity (GO:0003830);InterPro=Glycosyl transferase%2C family 17 (IPR006813);NIAS_FLcDNA=J013106K01;Oryzabase=19414;Expression=AK067372;TENOR=Os04t0477500-02;KEGG=Os04t0477500-02
Chr04	irgsp1_rep	five_prime_UTR	23896188	23896436	.	-	.	Parent=Os04t0477500-02
Chr04	irgsp1_rep	CDS	23896122	23896187	.	-	0	Parent=Os04t0477500-02
Chr04	irgsp1_rep	CDS	23893888	23894988	.	-	0	Parent=Os04t0477500-02
Chr04	irgsp1_rep	three_prime_UTR	23892824	23893887	.	-	.	Parent=Os04t0477500-02
Chr04	irgsp1_rep	mRNA	23893474	23896411	.	-	.	ID=Os04t0477500-03;Name=Os04t0477500-03;Locus_id=Os04g0477500;Oryzabase Gene Symbol Synonym(s)=OsSTA124;Note=Glycosyl transferase%2C family 17 protein.;Transcript_evidence=AK100897 (DDBJ%2C Best hit);ORF_evidence=Q01JY1 (UniProt);GO=Biological Process: protein N-linked glycosylation (GO:0006487),Cellular Component: membrane (GO:0016020),Molecular Function: beta-1%2C4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity (GO:0003830);InterPro=Glycosyl transferase%2C family 17 (IPR006813);NIAS_FLcDNA=J023131C16;Oryzabase=19414;Expression=AK100897;TENOR=Os04t0477500-03;KEGG=Os04t0477500-03
Chr04	irgsp1_rep	five_prime_UTR	23896188	23896411	.	-	.	Parent=Os04t0477500-03
Chr04	irgsp1_rep	CDS	23896122	23896187	.	-	0	Parent=Os04t0477500-03
Chr04	irgsp1_rep	CDS	23893888	23894988	.	-	0	Parent=Os04t0477500-03
Chr04	irgsp1_rep	three_prime_UTR	23893474	23893887	.	-	.	Parent=Os04t0477500-03
Chr04	irgsp1_rep	mRNA	23912885	23915134	.	+	.	ID=Os04t0477900-01;Name=Os04t0477900-01;Locus_id=Os04g0477900;Note=Similar to Cysteine proteinase EP-B 1 precursor (EC 3.4.22.-).;Transcript_evidence=AK059948 (DDBJ%2C Best hit),AK104268 (DDBJ%2C Best hit);ORF_evidence=Q01JZ1 (UniProt);NIAS_FLcDNA=006-210-H11,006-311-B03;TENOR=Os04t0477900-01
Chr04	irgsp1_rep	five_prime_UTR	23912885	23912905	.	+	.	Parent=Os04t0477900-01
Chr04	irgsp1_rep	CDS	23912906	23913215	.	+	0	Parent=Os04t0477900-01
Chr04	irgsp1_rep	CDS	23914468	23914850	.	+	2	Parent=Os04t0477900-01
Chr04	irgsp1_rep	three_prime_UTR	23914851	23915134	.	+	.	Parent=Os04t0477900-01
Chr04	irgsp1_rep	mRNA	23915756	23917013	.	-	.	ID=Os04t0478000-01;Name=Os04t0478000-01;Locus_id=Os04g0478000;Note=Protein of unknown function DUF3778 domain containing protein.;Transcript_evidence=AK099995 (DDBJ%2C Best hit);ORF_evidence=A2WR23 (UniProt);InterPro=Protein of unknown function DUF3778 (IPR022256);NIAS_FLcDNA=J013132J01;TENOR=Os04t0478000-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	23916781	23917013	.	-	.	Parent=Os04t0478000-01
Chr04	irgsp1_rep	CDS	23915809	23916780	.	-	0	Parent=Os04t0478000-01
Chr04	irgsp1_rep	three_prime_UTR	23915756	23915808	.	-	.	Parent=Os04t0478000-01
Chr04	irgsp1_rep	mRNA	23915777	23917010	.	-	.	ID=Os04t0478000-02;Name=Os04t0478000-02;Locus_id=Os04g0478000;Note=Protein of unknown function DUF3778 domain containing protein.;Transcript_evidence=AK061087 (DDBJ%2C Best hit);ORF_evidence=longestORF;InterPro=Protein of unknown function DUF3778 (IPR022256);NIAS_FLcDNA=006-206-G06;TENOR=Os04t0478000-02;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	23916561	23917010	.	-	.	Parent=Os04t0478000-02
Chr04	irgsp1_rep	five_prime_UTR	23916352	23916355	.	-	.	Parent=Os04t0478000-02
Chr04	irgsp1_rep	CDS	23915809	23916351	.	-	0	Parent=Os04t0478000-02
Chr04	irgsp1_rep	three_prime_UTR	23915777	23915808	.	-	.	Parent=Os04t0478000-02
Chr04	irgsp1_rep	mRNA	23939144	23942220	.	-	.	ID=Os04t0478600-01;Name=Os04t0478600-01;Locus_id=Os04g0478600;Note=Conserved hypothetical protein.;Transcript_evidence=AK073788 (DDBJ%2C Best hit);ORF_evidence=B9FFQ7 (UniProt);NIAS_FLcDNA=J033068K04;TENOR=Os04t0478600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	23941781	23942220	.	-	.	Parent=Os04t0478600-01
Chr04	irgsp1_rep	five_prime_UTR	23941467	23941559	.	-	.	Parent=Os04t0478600-01
Chr04	irgsp1_rep	five_prime_UTR	23941094	23941246	.	-	.	Parent=Os04t0478600-01
Chr04	irgsp1_rep	five_prime_UTR	23940403	23940489	.	-	.	Parent=Os04t0478600-01
Chr04	irgsp1_rep	five_prime_UTR	23940175	23940306	.	-	.	Parent=Os04t0478600-01
Chr04	irgsp1_rep	five_prime_UTR	23940039	23940087	.	-	.	Parent=Os04t0478600-01
Chr04	irgsp1_rep	CDS	23939865	23940038	.	-	0	Parent=Os04t0478600-01
Chr04	irgsp1_rep	CDS	23939269	23939490	.	-	0	Parent=Os04t0478600-01
Chr04	irgsp1_rep	three_prime_UTR	23939144	23939268	.	-	.	Parent=Os04t0478600-01
Chr04	irgsp1_rep	mRNA	23949133	23949655	.	-	.	ID=Os04t0478800-00;Name=Os04t0478800-00;Locus_id=Os04g0478800;Note=Conserved hypothetical protein.;Transcript_evidence=FP100047 (DDBJ);ORF_evidence=Q7XK27 (UniProt);TENOR=Os04t0478800-00
Chr04	irgsp1_rep	five_prime_UTR	23949595	23949655	.	-	.	Parent=Os04t0478800-00
Chr04	irgsp1_rep	CDS	23949133	23949594	.	-	0	Parent=Os04t0478800-00
Chr04	irgsp1_rep	mRNA	23955482	23959974	.	+	.	ID=Os04t0479000-01;Name=Os04t0479000-01;Locus_id=Os04g0479000;CGSNL Gene Symbol=CRC1;CGSNL Gene Name=CENTRAL REGION COMPONENT1;Oryzabase Gene Symbol Synonym(s)=OsCRC1;Oryzabase Gene Name Synonym(s)=CENTRAL REGION COMPONENT 1;Note=Similar to OSIGBa0116M22.9 protein.;Transcript_evidence=AK106344 (DDBJ%2C Best hit);ORF_evidence=Q01JZ0 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=Chaperonin ClpA/B (IPR001270),ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);NIAS_FLcDNA=002-101-H02;Oryzabase=13616;TENOR=Os04t0479000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	23955482	23955701	.	+	0	Parent=Os04t0479000-01
Chr04	irgsp1_rep	CDS	23955825	23955894	.	+	2	Parent=Os04t0479000-01
Chr04	irgsp1_rep	CDS	23956407	23956513	.	+	1	Parent=Os04t0479000-01
Chr04	irgsp1_rep	CDS	23956598	23956665	.	+	2	Parent=Os04t0479000-01
Chr04	irgsp1_rep	CDS	23957123	23957226	.	+	0	Parent=Os04t0479000-01
Chr04	irgsp1_rep	CDS	23957324	23957428	.	+	1	Parent=Os04t0479000-01
Chr04	irgsp1_rep	CDS	23957581	23957670	.	+	1	Parent=Os04t0479000-01
Chr04	irgsp1_rep	CDS	23957748	23957823	.	+	1	Parent=Os04t0479000-01
Chr04	irgsp1_rep	CDS	23958058	23958127	.	+	0	Parent=Os04t0479000-01
Chr04	irgsp1_rep	CDS	23958565	23958635	.	+	2	Parent=Os04t0479000-01
Chr04	irgsp1_rep	CDS	23958711	23958801	.	+	0	Parent=Os04t0479000-01
Chr04	irgsp1_rep	CDS	23958958	23959085	.	+	2	Parent=Os04t0479000-01
Chr04	irgsp1_rep	CDS	23959313	23959321	.	+	0	Parent=Os04t0479000-01
Chr04	irgsp1_rep	CDS	23959402	23959422	.	+	0	Parent=Os04t0479000-01
Chr04	irgsp1_rep	three_prime_UTR	23959423	23959441	.	+	.	Parent=Os04t0479000-01
Chr04	irgsp1_rep	three_prime_UTR	23959528	23959974	.	+	.	Parent=Os04t0479000-01
Chr04	irgsp1_rep	mRNA	23955481	23959963	.	+	.	ID=Os04t0479000-02;Name=Os04t0479000-02;Locus_id=Os04g0479000;RAP-DB Gene Symbol Synonym(s)=CRC1;RAP-DB Gene Name Synonym(s)=CENTRAL REGION COMPONENT1;CGSNL Gene Symbol=CRC1;CGSNL Gene Name=CENTRAL REGION COMPONENT1;Oryzabase Gene Symbol Synonym(s)=OsCRC1;Oryzabase Gene Name Synonym(s)=CENTRAL REGION COMPONENT 1;Note=Synaptonemal complex component%2C Initiation of meiotic recombination%2C Recruitment of PAIR2 onto meiotic Chromosomes;Transcript_evidence=KF245924 (japonica);ORF_evidence=U3N475;GO=Molecular Function: ATP binding (GO:0005524);InterPro=ClpA/B family (IPR001270),P-loop containing nucleoside triphosphate hydrolase (IPR027417),AAA+ ATPase domain (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);Manual Curation=March 14%2C 2014;Literature_PMID=23943860;Oryzabase=13616
Chr04	irgsp1_rep	five_prime_UTR	23955481	23955542	.	+	.	Parent=Os04t0479000-02
Chr04	irgsp1_rep	CDS	23955543	23955726	.	+	0	Parent=Os04t0479000-02
Chr04	irgsp1_rep	CDS	23955831	23955894	.	+	2	Parent=Os04t0479000-02
Chr04	irgsp1_rep	CDS	23956407	23956513	.	+	1	Parent=Os04t0479000-02
Chr04	irgsp1_rep	CDS	23956598	23956665	.	+	2	Parent=Os04t0479000-02
Chr04	irgsp1_rep	CDS	23957123	23957226	.	+	0	Parent=Os04t0479000-02
Chr04	irgsp1_rep	CDS	23957324	23957428	.	+	1	Parent=Os04t0479000-02
Chr04	irgsp1_rep	CDS	23957581	23957670	.	+	1	Parent=Os04t0479000-02
Chr04	irgsp1_rep	CDS	23957748	23957823	.	+	1	Parent=Os04t0479000-02
Chr04	irgsp1_rep	CDS	23958058	23958127	.	+	0	Parent=Os04t0479000-02
Chr04	irgsp1_rep	CDS	23958565	23958635	.	+	2	Parent=Os04t0479000-02
Chr04	irgsp1_rep	CDS	23958711	23958801	.	+	0	Parent=Os04t0479000-02
Chr04	irgsp1_rep	CDS	23958958	23959085	.	+	2	Parent=Os04t0479000-02
Chr04	irgsp1_rep	CDS	23959313	23959441	.	+	0	Parent=Os04t0479000-02
Chr04	irgsp1_rep	CDS	23959528	23959668	.	+	0	Parent=Os04t0479000-02
Chr04	irgsp1_rep	three_prime_UTR	23959669	23959963	.	+	.	Parent=Os04t0479000-02
Chr04	irgsp1_rep	mRNA	23960070	23963329	.	-	.	ID=Os04t0479100-01;Name=Os04t0479100-01;Locus_id=Os04g0479100;Oryzabase Gene Symbol Synonym(s)=TGO%2C tgo;Oryzabase Gene Name Synonym(s)=transglutaminase%2C Tgase;Note=Similar to OSIGBa0116M22.10 protein.;Transcript_evidence=AK071348 (DDBJ%2C Best hit);ORF_evidence=Q01JY9 (UniProt);NIAS_FLcDNA=J023092D06;Oryzabase=19642;Expression=AK071348;TENOR=Os04t0479100-01;KEGG=Os04t0479100-01
Chr04	irgsp1_rep	five_prime_UTR	23962955	23963329	.	-	.	Parent=Os04t0479100-01
Chr04	irgsp1_rep	five_prime_UTR	23962148	23962151	.	-	.	Parent=Os04t0479100-01
Chr04	irgsp1_rep	CDS	23961612	23962147	.	-	0	Parent=Os04t0479100-01
Chr04	irgsp1_rep	CDS	23961372	23961511	.	-	1	Parent=Os04t0479100-01
Chr04	irgsp1_rep	CDS	23960381	23960925	.	-	2	Parent=Os04t0479100-01
Chr04	irgsp1_rep	three_prime_UTR	23960070	23960380	.	-	.	Parent=Os04t0479100-01
Chr04	irgsp1_rep	mRNA	23960123	23963295	.	-	.	ID=Os04t0479100-02;Name=Os04t0479100-02;Locus_id=Os04g0479100;Oryzabase Gene Symbol Synonym(s)=TGO%2C tgo;Oryzabase Gene Name Synonym(s)=transglutaminase%2C Tgase;Note=Similar to OSIGBa0116M22.10 protein.;Transcript_evidence=AK104848 (DDBJ%2C Best hit);ORF_evidence=Q01JY9 (UniProt);NIAS_FLcDNA=001-042-H10;Oryzabase=19642;Expression=AK104848;TENOR=Os04t0479100-02;KEGG=Os04t0479100-02
Chr04	irgsp1_rep	five_prime_UTR	23962955	23963295	.	-	.	Parent=Os04t0479100-02
Chr04	irgsp1_rep	five_prime_UTR	23962148	23962151	.	-	.	Parent=Os04t0479100-02
Chr04	irgsp1_rep	CDS	23961612	23962147	.	-	0	Parent=Os04t0479100-02
Chr04	irgsp1_rep	CDS	23961372	23961511	.	-	1	Parent=Os04t0479100-02
Chr04	irgsp1_rep	CDS	23960381	23960925	.	-	2	Parent=Os04t0479100-02
Chr04	irgsp1_rep	three_prime_UTR	23960123	23960380	.	-	.	Parent=Os04t0479100-02
Chr04	irgsp1_rep	mRNA	23964000	23967781	.	-	.	ID=Os04t0479200-01;Name=Os04t0479200-01;Locus_id=Os04g0479200;Note=Similar to NAD-dependent isocitrate dehydrogenase c%3B1.;Transcript_evidence=AK072524 (DDBJ%2C Best hit),AK072240 (DDBJ%2C Best hit),AK099258 (DDBJ%2C Best hit);ORF_evidence=Q33E21 (UniProt);GO=Biological Process: tricarboxylic acid cycle (GO:0006099),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: isocitrate dehydrogenase (NAD+) activity (GO:0004449),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: NAD binding (GO:0051287);InterPro=Isocitrate/isopropylmalate dehydrogenase (IPR001804),Isocitrate dehydrogenase NAD-dependent (IPR004434),Isopropylmalate dehydrogenase-like domain (IPR024084);NIAS_FLcDNA=J023127J10,J023001I19,J023001J19;TENOR=Os04t0479200-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	23967655	23967781	.	-	.	Parent=Os04t0479200-01
Chr04	irgsp1_rep	CDS	23967127	23967654	.	-	0	Parent=Os04t0479200-01
Chr04	irgsp1_rep	CDS	23965942	23966181	.	-	0	Parent=Os04t0479200-01
Chr04	irgsp1_rep	CDS	23964933	23965011	.	-	0	Parent=Os04t0479200-01
Chr04	irgsp1_rep	CDS	23964349	23964623	.	-	2	Parent=Os04t0479200-01
Chr04	irgsp1_rep	three_prime_UTR	23964000	23964348	.	-	.	Parent=Os04t0479200-01
Chr04	irgsp1_rep	mRNA	23968221	23972158	.	-	.	ID=Os04t0479300-01;Name=Os04t0479300-01;Locus_id=Os04g0479300;Note=Similar to OSIGBa0116M22.12 protein.;Transcript_evidence=AK106088 (DDBJ%2C Best hit);ORF_evidence=Q01JY7 (UniProt);InterPro=FAM175 family (IPR023238);NIAS_FLcDNA=001-207-B05;TENOR=Os04t0479300-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	23972157	23972158	.	-	.	Parent=Os04t0479300-01
Chr04	irgsp1_rep	CDS	23971383	23972156	.	-	0	Parent=Os04t0479300-01
Chr04	irgsp1_rep	CDS	23969431	23969478	.	-	0	Parent=Os04t0479300-01
Chr04	irgsp1_rep	three_prime_UTR	23969401	23969430	.	-	.	Parent=Os04t0479300-01
Chr04	irgsp1_rep	three_prime_UTR	23968221	23968492	.	-	.	Parent=Os04t0479300-01
Chr04	irgsp1_rep	mRNA	23976077	23979412	.	-	.	ID=Os04t0479500-01;Name=Os04t0479500-01;Locus_id=Os04g0479500;Oryzabase Gene Symbol Synonym(s)=OsFbox219%2C Os_F0485;Oryzabase Gene Name Synonym(s)=F-box protein 219;Note=Similar to OSIGBa0158F13.2 protein.;Transcript_evidence=AK105430 (DDBJ%2C Best hit);ORF_evidence=Q01K45 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=001-124-E06;Oryzabase=17006;TENOR=Os04t0479500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	23979138	23979412	.	-	.	Parent=Os04t0479500-01
Chr04	irgsp1_rep	CDS	23979056	23979137	.	-	0	Parent=Os04t0479500-01
Chr04	irgsp1_rep	CDS	23978599	23978714	.	-	2	Parent=Os04t0479500-01
Chr04	irgsp1_rep	CDS	23977435	23977926	.	-	0	Parent=Os04t0479500-01
Chr04	irgsp1_rep	three_prime_UTR	23977320	23977434	.	-	.	Parent=Os04t0479500-01
Chr04	irgsp1_rep	three_prime_UTR	23977110	23977228	.	-	.	Parent=Os04t0479500-01
Chr04	irgsp1_rep	three_prime_UTR	23976766	23976921	.	-	.	Parent=Os04t0479500-01
Chr04	irgsp1_rep	three_prime_UTR	23976077	23976668	.	-	.	Parent=Os04t0479500-01
Chr04	irgsp1_rep	mRNA	23980172	23980393	.	+	.	ID=Os04t0479550-00;Name=Os04t0479550-00;Locus_id=Os04g0479550;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os04t0479550-00
Chr04	irgsp1_rep	CDS	23980172	23980393	.	+	0	Parent=Os04t0479550-00
Chr04	irgsp1_rep	mRNA	23983802	23987394	.	-	.	ID=Os04t0479700-01;Name=Os04t0479700-01;Locus_id=Os04g0479700;Note=Similar to Phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase.;Transcript_evidence=AK066264 (DDBJ%2C Best hit);ORF_evidence=B6TMJ4 (UniProt);NIAS_FLcDNA=J013059K12;TENOR=Os04t0479700-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	23986402	23987394	.	-	.	Parent=Os04t0479700-01
Chr04	irgsp1_rep	CDS	23986264	23986401	.	-	0	Parent=Os04t0479700-01
Chr04	irgsp1_rep	three_prime_UTR	23983802	23986263	.	-	.	Parent=Os04t0479700-01
Chr04	irgsp1_rep	mRNA	23998827	24002236	.	+	.	ID=Os04t0479800-01;Name=Os04t0479800-01;Locus_id=Os04g0479800;Oryzabase Gene Symbol Synonym(s)=OsFbox220%2C Os_F0518;Oryzabase Gene Name Synonym(s)=F-box protein 220;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK121430 (DDBJ%2C Best hit);ORF_evidence=Q01K44 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023136L12;Oryzabase=17007;Expression=AK121430;TENOR=Os04t0479800-01;KEGG=Os04t0479800-01
Chr04	irgsp1_rep	five_prime_UTR	23998827	23999062	.	+	.	Parent=Os04t0479800-01
Chr04	irgsp1_rep	CDS	23999063	23999153	.	+	0	Parent=Os04t0479800-01
Chr04	irgsp1_rep	CDS	23999593	23999708	.	+	2	Parent=Os04t0479800-01
Chr04	irgsp1_rep	CDS	24000385	24001203	.	+	0	Parent=Os04t0479800-01
Chr04	irgsp1_rep	CDS	24001392	24001547	.	+	0	Parent=Os04t0479800-01
Chr04	irgsp1_rep	CDS	24001644	24002018	.	+	0	Parent=Os04t0479800-01
Chr04	irgsp1_rep	three_prime_UTR	24002019	24002236	.	+	.	Parent=Os04t0479800-01
Chr04	irgsp1_rep	mRNA	24004706	24005693	.	-	.	ID=Os04t0479900-01;Name=Os04t0479900-01;Locus_id=Os04g0479900;Note=Conserved hypothetical protein.;Transcript_evidence=AK241730 (DDBJ%2C Best hit);ORF_evidence=Q7XK15 (UniProt);NIAS_FLcDNA=J065199L20;TENOR=Os04t0479900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	24005629	24005693	.	-	.	Parent=Os04t0479900-01
Chr04	irgsp1_rep	CDS	24005332	24005628	.	-	0	Parent=Os04t0479900-01
Chr04	irgsp1_rep	three_prime_UTR	24004706	24005331	.	-	.	Parent=Os04t0479900-01
Chr04	irgsp1_rep	mRNA	24007292	24007969	.	-	.	ID=Os04t0480050-00;Name=Os04t0480050-00;Locus_id=Os04g0480050;Note=Conserved hypothetical protein.;Transcript_evidence=AK334856 (DDBJ);ORF_evidence=A2WZD0 (UniProt);TENOR=Os04t0480050-00
Chr04	irgsp1_rep	CDS	24007523	24007969	.	-	0	Parent=Os04t0480050-00
Chr04	irgsp1_rep	three_prime_UTR	24007292	24007522	.	-	.	Parent=Os04t0480050-00
Chr04	irgsp1_rep	mRNA	24013077	24016828	.	+	.	ID=Os04t0480100-01;Name=Os04t0480100-01;Locus_id=Os04g0480100;Note=Eukaryotic translation initiation factor 4B.;Transcript_evidence=AK243350 (DDBJ%2C Best hit);ORF_evidence=Q01K43 (UniProt);InterPro=Plant specific eukaryotic initiation factor 4B (IPR010433);NIAS_FLcDNA=J100060F14;TENOR=Os04t0480100-01;KEGG=Os04t0480100-01
Chr04	irgsp1_rep	five_prime_UTR	24013077	24013174	.	+	.	Parent=Os04t0480100-01
Chr04	irgsp1_rep	CDS	24013175	24014346	.	+	0	Parent=Os04t0480100-01
Chr04	irgsp1_rep	CDS	24015216	24015617	.	+	1	Parent=Os04t0480100-01
Chr04	irgsp1_rep	CDS	24016443	24016467	.	+	1	Parent=Os04t0480100-01
Chr04	irgsp1_rep	three_prime_UTR	24016468	24016828	.	+	.	Parent=Os04t0480100-01
Chr04	irgsp1_rep	mRNA	24018298	24019456	.	-	.	ID=Os04t0480200-01;Name=Os04t0480200-01;Locus_id=Os04g0480200;RAP-DB Gene Symbol Synonym(s)=OsNAR2.2;RAP-DB Gene Name Synonym(s)=high-affinity nitrate transporter-activating protein 2.2;CGSNL Gene Symbol=NAR2.2;CGSNL Gene Name=ACTIVATOR FOR NRT2;Oryzabase Gene Symbol Synonym(s)=OsNAR2.2%2C OsNRT3.1B;Oryzabase Gene Name Synonym(s)=activator for NRT2%2C high-affinity nitrate transporter-activating element 2.2;Note=Partner protein for high-affinity nitrate transport%2C Determination of root growth and development in a nitrate-dependent manner;Transcript_evidence=AK109571;ORF_evidence=Q7XK12;GO=Biological Process: response to nitrate (GO:0010167),Biological Process: nitrate transport (GO:0015706);InterPro=High-affinity nitrate transporter (IPR016605);NIAS_FLcDNA=002-132-B10;Manual Curation=February 21%2C 2020;Literature_PMID=32070909;Oryzabase=6238;Expression=AK109571;TENOR=Os04t0480200-01;KEGG=Os04t0480200-01
Chr04	irgsp1_rep	five_prime_UTR	24019437	24019456	.	-	.	Parent=Os04t0480200-01
Chr04	irgsp1_rep	CDS	24019271	24019436	.	-	0	Parent=Os04t0480200-01
Chr04	irgsp1_rep	CDS	24018439	24018905	.	-	2	Parent=Os04t0480200-01
Chr04	irgsp1_rep	three_prime_UTR	24018298	24018438	.	-	.	Parent=Os04t0480200-01
Chr04	irgsp1_rep	mRNA	24021491	24025994	.	+	.	ID=Os04t0480300-01;Name=Os04t0480300-01;Locus_id=Os04g0480300;Oryzabase Gene Symbol Synonym(s)=OsCHB703%2C CHB703;Oryzabase Gene Name Synonym(s)=SWIRM domain-containing protein CHB703;Note=Myb%2C DNA-binding domain containing protein.;Transcript_evidence=AK102453 (DDBJ%2C Best hit);ORF_evidence=Q01K41 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),SWIRM (IPR007526),Homeodomain-like (IPR009057),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),SANT%2C eukarya (IPR017884);NIAS_FLcDNA=J033093P09;Oryzabase=12518;Expression=AK102453;TENOR=Os04t0480300-01;KEGG=Os04t0480300-01
Chr04	irgsp1_rep	five_prime_UTR	24021491	24021540	.	+	.	Parent=Os04t0480300-01
Chr04	irgsp1_rep	CDS	24021541	24021631	.	+	0	Parent=Os04t0480300-01
Chr04	irgsp1_rep	CDS	24021797	24022332	.	+	2	Parent=Os04t0480300-01
Chr04	irgsp1_rep	CDS	24023173	24023658	.	+	0	Parent=Os04t0480300-01
Chr04	irgsp1_rep	CDS	24023755	24023918	.	+	0	Parent=Os04t0480300-01
Chr04	irgsp1_rep	CDS	24023998	24024047	.	+	1	Parent=Os04t0480300-01
Chr04	irgsp1_rep	CDS	24024519	24024673	.	+	2	Parent=Os04t0480300-01
Chr04	irgsp1_rep	CDS	24025391	24025591	.	+	0	Parent=Os04t0480300-01
Chr04	irgsp1_rep	three_prime_UTR	24025592	24025994	.	+	.	Parent=Os04t0480300-01
Chr04	irgsp1_rep	mRNA	24026635	24029050	.	+	.	ID=Os04t0480400-01;Name=Os04t0480400-01;Locus_id=Os04g0480400;Note=Similar to OSIGBa0158F13.7 protein.;Transcript_evidence=AK068996 (DDBJ%2C Best hit);ORF_evidence=Q01K40 (UniProt);InterPro=Surfeit locus 2 (IPR008833);NIAS_FLcDNA=J023001A15;TENOR=Os04t0480400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	24026635	24026707	.	+	.	Parent=Os04t0480400-01
Chr04	irgsp1_rep	CDS	24026708	24026997	.	+	0	Parent=Os04t0480400-01
Chr04	irgsp1_rep	CDS	24027276	24027373	.	+	1	Parent=Os04t0480400-01
Chr04	irgsp1_rep	CDS	24027872	24028162	.	+	2	Parent=Os04t0480400-01
Chr04	irgsp1_rep	CDS	24028528	24028594	.	+	2	Parent=Os04t0480400-01
Chr04	irgsp1_rep	CDS	24028666	24028747	.	+	1	Parent=Os04t0480400-01
Chr04	irgsp1_rep	three_prime_UTR	24028748	24029050	.	+	.	Parent=Os04t0480400-01
Chr04	irgsp1_rep	mRNA	24032526	24035930	.	+	.	ID=Os04t0480500-01;Name=Os04t0480500-01;Locus_id=Os04g0480500;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=AK119334 (DDBJ%2C Best hit);ORF_evidence=Q01K39 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=001-131-C04;Expression=AK119334;TENOR=Os04t0480500-01;KEGG=Os04t0480500-01
Chr04	irgsp1_rep	five_prime_UTR	24032526	24032553	.	+	.	Parent=Os04t0480500-01
Chr04	irgsp1_rep	CDS	24032554	24033862	.	+	0	Parent=Os04t0480500-01
Chr04	irgsp1_rep	CDS	24033955	24035882	.	+	2	Parent=Os04t0480500-01
Chr04	irgsp1_rep	three_prime_UTR	24035883	24035930	.	+	.	Parent=Os04t0480500-01
Chr04	irgsp1_rep	mRNA	24044380	24045225	.	-	.	ID=Os04t0480600-01;Name=Os04t0480600-01;Locus_id=Os04g0480600;Note=Similar to CytoChrome P450 71A1 (EC 1.14.-.-) (CYPLXXIA1) (ARP-2).;Transcript_evidence=AK242477 (DDBJ%2C Best hit);ORF_evidence=Q01K38 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J080304H10;TENOR=Os04t0480600-01;KEGG=Os04t0480600-01
Chr04	irgsp1_rep	five_prime_UTR	24045212	24045225	.	-	.	Parent=Os04t0480600-01
Chr04	irgsp1_rep	CDS	24044450	24045211	.	-	0	Parent=Os04t0480600-01
Chr04	irgsp1_rep	three_prime_UTR	24044380	24044449	.	-	.	Parent=Os04t0480600-01
Chr04	irgsp1_rep	mRNA	24046426	24047084	.	-	.	ID=Os04t0480650-00;Name=Os04t0480650-00;Locus_id=Os04g0480650;Note=Similar to OSIGBa0158F13.10 protein.;Transcript_evidence=CT834002 (DDBJ%2C Secondary hit);ORF_evidence=Q01K51 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);TENOR=Os04t0480650-00
Chr04	irgsp1_rep	five_prime_UTR	24047061	24047084	.	-	.	Parent=Os04t0480650-00
Chr04	irgsp1_rep	CDS	24046426	24047060	.	-	0	Parent=Os04t0480650-00
Chr04	irgsp1_rep	mRNA	24049070	24051142	.	-	.	ID=Os04t0480700-01;Name=Os04t0480700-01;Locus_id=Os04g0480700;Note=CytoChrome P450 family protein.;Transcript_evidence=AK121175 (DDBJ%2C Best hit);ORF_evidence=Q01K51 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J023082O06;Expression=AK121175;TENOR=Os04t0480700-01;KEGG=Os04t0480700-01
Chr04	irgsp1_rep	five_prime_UTR	24051090	24051142	.	-	.	Parent=Os04t0480700-01
Chr04	irgsp1_rep	CDS	24050184	24051089	.	-	0	Parent=Os04t0480700-01
Chr04	irgsp1_rep	CDS	24049214	24049843	.	-	0	Parent=Os04t0480700-01
Chr04	irgsp1_rep	three_prime_UTR	24049070	24049213	.	-	.	Parent=Os04t0480700-01
Chr04	irgsp1_rep	mRNA	24049301	24050037	.	+	.	ID=Os04t0480801-01;Name=Os04t0480801-01;Locus_id=Os04g0480801;Note=Hypothetical gene.;Transcript_evidence=AK063679 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-119-E04;Expression=AK063679;TENOR=Os04t0480801-01;KEGG=Os04t0480801-01
Chr04	irgsp1_rep	five_prime_UTR	24049301	24049302	.	+	.	Parent=Os04t0480801-01
Chr04	irgsp1_rep	CDS	24049303	24049551	.	+	0	Parent=Os04t0480801-01
Chr04	irgsp1_rep	three_prime_UTR	24049552	24050037	.	+	.	Parent=Os04t0480801-01
Chr04	irgsp1_rep	mRNA	24054117	24054476	.	-	.	ID=Os04t0480802-00;Name=Os04t0480802-00;Locus_id=Os04g0480802;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os04t0480802-00
Chr04	irgsp1_rep	CDS	24054117	24054476	.	-	0	Parent=Os04t0480802-00
Chr04	irgsp1_rep	mRNA	24054885	24058958	.	+	.	ID=Os04t0480900-01;Name=Os04t0480900-01;Locus_id=Os04g0480900;Oryzabase Gene Name Synonym(s)=LSSR1 paralog;Note=Glycoside hydrolase%2C family 5 protein.;Transcript_evidence=AK109889 (DDBJ%2C Best hit);ORF_evidence=Q01K50 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Ricin B lectin (IPR000772),Glycoside hydrolase%2C family 5 (IPR001547),Ricin B-related lectin (IPR008997),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=002-149-E03;Oryzabase=23084;Expression=AK109889;TENOR=Os04t0480900-01;KEGG=Os04t0480900-01
Chr04	irgsp1_rep	five_prime_UTR	24054885	24054894	.	+	.	Parent=Os04t0480900-01
Chr04	irgsp1_rep	CDS	24054895	24055302	.	+	0	Parent=Os04t0480900-01
Chr04	irgsp1_rep	CDS	24056786	24057030	.	+	0	Parent=Os04t0480900-01
Chr04	irgsp1_rep	CDS	24057143	24057663	.	+	1	Parent=Os04t0480900-01
Chr04	irgsp1_rep	CDS	24058150	24058640	.	+	2	Parent=Os04t0480900-01
Chr04	irgsp1_rep	three_prime_UTR	24058641	24058958	.	+	.	Parent=Os04t0480900-01
Chr04	irgsp1_rep	mRNA	24060045	24062872	.	+	.	ID=Os04t0481000-00;Name=Os04t0481000-00;Locus_id=Os04g0481000;Oryzabase Gene Name Synonym(s)=LSSR1 paralog;Note=Similar to H0510A06.1 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q25AK4 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 5 (IPR001547),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);Oryzabase=23085;TENOR=Os04t0481000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	24060045	24060449	.	+	0	Parent=Os04t0481000-00
Chr04	irgsp1_rep	CDS	24061640	24061887	.	+	0	Parent=Os04t0481000-00
Chr04	irgsp1_rep	CDS	24061993	24062513	.	+	1	Parent=Os04t0481000-00
Chr04	irgsp1_rep	CDS	24062850	24062872	.	+	2	Parent=Os04t0481000-00
Chr04	irgsp1_rep	mRNA	24065118	24067994	.	-	.	ID=Os04t0481050-01;Name=Os04t0481050-01;Locus_id=Os04g0481050;Note=Hypothetical gene.;Transcript_evidence=AK119297 (DDBJ%2C Best hit);ORF_evidence=NP_001173990.1 (RefSeq);NIAS_FLcDNA=001-130-E08;TENOR=Os04t0481050-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	24067848	24067994	.	-	.	Parent=Os04t0481050-01
Chr04	irgsp1_rep	CDS	24066369	24067847	.	-	0	Parent=Os04t0481050-01
Chr04	irgsp1_rep	three_prime_UTR	24065118	24066368	.	-	.	Parent=Os04t0481050-01
Chr04	irgsp1_rep	mRNA	24070629	24072167	.	-	.	ID=Os04t0481100-01;Name=Os04t0481100-01;Locus_id=Os04g0481100;Note=Similar to H0510A06.3 protein.;Transcript_evidence=AK111421 (DDBJ%2C Best hit);ORF_evidence=Q25AK2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Raffinose synthase (IPR008811),Aldolase-type TIM barrel (IPR013785),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=002-182-G09;Oryzabase=15255;Expression=AK111421;TENOR=Os04t0481100-01;KEGG=Os04t0481100-01
Chr04	irgsp1_rep	five_prime_UTR	24072059	24072167	.	-	.	Parent=Os04t0481100-01
Chr04	irgsp1_rep	CDS	24071877	24072058	.	-	0	Parent=Os04t0481100-01
Chr04	irgsp1_rep	CDS	24071561	24071787	.	-	1	Parent=Os04t0481100-01
Chr04	irgsp1_rep	CDS	24071359	24071449	.	-	2	Parent=Os04t0481100-01
Chr04	irgsp1_rep	CDS	24071225	24071273	.	-	1	Parent=Os04t0481100-01
Chr04	irgsp1_rep	CDS	24070986	24071077	.	-	0	Parent=Os04t0481100-01
Chr04	irgsp1_rep	CDS	24070735	24070873	.	-	1	Parent=Os04t0481100-01
Chr04	irgsp1_rep	three_prime_UTR	24070629	24070734	.	-	.	Parent=Os04t0481100-01
Chr04	irgsp1_rep	mRNA	24068038	24072123	.	-	.	ID=Os04t0481100-02;Name=Os04t0481100-02;Locus_id=Os04g0481100;Note=Similar to H0510A06.3 protein.;Transcript_evidence=AK099817 (DDBJ%2C Best hit);ORF_evidence=Q25AK2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Raffinose synthase (IPR008811),Aldolase-type TIM barrel (IPR013785),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J013100E13;Oryzabase=15255;TENOR=Os04t0481100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	24071960	24072123	.	-	0	Parent=Os04t0481100-02
Chr04	irgsp1_rep	CDS	24071877	24071918	.	-	1	Parent=Os04t0481100-02
Chr04	irgsp1_rep	CDS	24071561	24071787	.	-	1	Parent=Os04t0481100-02
Chr04	irgsp1_rep	CDS	24071359	24071449	.	-	2	Parent=Os04t0481100-02
Chr04	irgsp1_rep	CDS	24071225	24071273	.	-	1	Parent=Os04t0481100-02
Chr04	irgsp1_rep	CDS	24070986	24071077	.	-	0	Parent=Os04t0481100-02
Chr04	irgsp1_rep	CDS	24070766	24070873	.	-	1	Parent=Os04t0481100-02
Chr04	irgsp1_rep	CDS	24070321	24070428	.	-	1	Parent=Os04t0481100-02
Chr04	irgsp1_rep	CDS	24069826	24070236	.	-	1	Parent=Os04t0481100-02
Chr04	irgsp1_rep	CDS	24069613	24069754	.	-	1	Parent=Os04t0481100-02
Chr04	irgsp1_rep	CDS	24069458	24069525	.	-	0	Parent=Os04t0481100-02
Chr04	irgsp1_rep	CDS	24069227	24069361	.	-	1	Parent=Os04t0481100-02
Chr04	irgsp1_rep	CDS	24068917	24069134	.	-	1	Parent=Os04t0481100-02
Chr04	irgsp1_rep	CDS	24068737	24068825	.	-	2	Parent=Os04t0481100-02
Chr04	irgsp1_rep	CDS	24068245	24068541	.	-	0	Parent=Os04t0481100-02
Chr04	irgsp1_rep	three_prime_UTR	24068038	24068244	.	-	.	Parent=Os04t0481100-02
Chr04	irgsp1_rep	mRNA	24064726	24067935	.	+	.	ID=Os04t0481200-01;Name=Os04t0481200-01;Locus_id=Os04g0481200;Oryzabase Gene Name Synonym(s)=LSSR1 paralog;Note=Similar to H0510A06.2 protein.;Transcript_evidence=AK242253 (DDBJ%2C Best hit);ORF_evidence=Q25AK3 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 5 (IPR001547),Ricin B-related lectin (IPR008997),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J075182I02;Oryzabase=23086;TENOR=Os04t0481200-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	24064726	24064868	.	+	.	Parent=Os04t0481200-01
Chr04	irgsp1_rep	five_prime_UTR	24065290	24065355	.	+	.	Parent=Os04t0481200-01
Chr04	irgsp1_rep	CDS	24065356	24065860	.	+	0	Parent=Os04t0481200-01
Chr04	irgsp1_rep	CDS	24065971	24066220	.	+	2	Parent=Os04t0481200-01
Chr04	irgsp1_rep	CDS	24066608	24067128	.	+	1	Parent=Os04t0481200-01
Chr04	irgsp1_rep	CDS	24067196	24067731	.	+	2	Parent=Os04t0481200-01
Chr04	irgsp1_rep	three_prime_UTR	24067732	24067935	.	+	.	Parent=Os04t0481200-01
Chr04	irgsp1_rep	mRNA	24069227	24069925	.	+	.	ID=Os04t0481201-00;Name=Os04t0481201-00;Locus_id=Os04g0481201;Note=Non-protein coding transcript.;Transcript_evidence=AM939963 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0481201-00
Chr04	irgsp1_rep	exon	24069227	24069357	.	+	.	Parent=Os04t0481201-00
Chr04	irgsp1_rep	exon	24069452	24069525	.	+	.	Parent=Os04t0481201-00
Chr04	irgsp1_rep	exon	24069613	24069754	.	+	.	Parent=Os04t0481201-00
Chr04	irgsp1_rep	exon	24069826	24069925	.	+	.	Parent=Os04t0481201-00
Chr04	irgsp1_rep	mRNA	24073335	24074726	.	+	.	ID=Os04t0481300-01;Name=Os04t0481300-01;Locus_id=Os04g0481300;Note=Methyltransferase type 11 domain containing protein.;Transcript_evidence=AK067096 (DDBJ%2C Best hit);ORF_evidence=Q25AK1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Methyltransferase type 11 (IPR013216);NIAS_FLcDNA=J013097E10;Expression=AK067096;TENOR=Os04t0481300-01;KEGG=Os04t0481300-01
Chr04	irgsp1_rep	five_prime_UTR	24073335	24073411	.	+	.	Parent=Os04t0481300-01
Chr04	irgsp1_rep	CDS	24073412	24073903	.	+	0	Parent=Os04t0481300-01
Chr04	irgsp1_rep	CDS	24074284	24074598	.	+	0	Parent=Os04t0481300-01
Chr04	irgsp1_rep	three_prime_UTR	24074599	24074726	.	+	.	Parent=Os04t0481300-01
Chr04	irgsp1_rep	mRNA	24075258	24077600	.	-	.	ID=Os04t0481400-01;Name=Os04t0481400-01;Locus_id=Os04g0481400;CGSNL Gene Symbol=PIMT2;CGSNL Gene Name=PROTEIN REPAIR L-ISOASPARTYL METHYLTRANSFERASE 2;Oryzabase Gene Symbol Synonym(s)=OsPIMT2%2C OsPIMT2'-1%2C OsPIMT2'-2%2C deltaOsPIMT2;Oryzabase Gene Name Synonym(s)=Protein repair L-isoaspartyl methyltransferase 2%2C PROTEIN L-ISOASPARTYL O-METHYLTRANSFERASE 2;Note=Similar to Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) (Protein- beta-aspartate methyltransferase) (PIMT) (Protein L-isoaspartyl methyltransferase) (L-isoaspartyl protein carboxyl methyltransferase).;Transcript_evidence=AK105549 (DDBJ%2C Best hit);ORF_evidence=B9RAR0 (UniProt);GO=Biological Process: protein modification process (GO:0006464),Molecular Function: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity (GO:0004719);InterPro=Protein-L-isoaspartate(D-aspartate) O-methyltransferase (IPR000682);NIAS_FLcDNA=001-128-A09;Oryzabase=20397;Expression=AK105549;TENOR=Os04t0481400-01;KEGG=Os04t0481400-01 (EC:2.1.1.77)
Chr04	irgsp1_rep	five_prime_UTR	24076549	24077600	.	-	.	Parent=Os04t0481400-01
Chr04	irgsp1_rep	CDS	24076242	24076548	.	-	0	Parent=Os04t0481400-01
Chr04	irgsp1_rep	CDS	24075858	24076039	.	-	2	Parent=Os04t0481400-01
Chr04	irgsp1_rep	three_prime_UTR	24075258	24075857	.	-	.	Parent=Os04t0481400-01
Chr04	irgsp1_rep	mRNA	24075253	24077518	.	-	.	ID=Os04t0481400-02;Name=Os04t0481400-02;Locus_id=Os04g0481400;RAP-DB Gene Symbol Synonym(s)=PIMT2%2C OsPIMT2;RAP-DB Gene Name Synonym(s)=PROTEIN REPAIR L-ISOASPARTYL METHYLTRANSFERASE 2%2C Protein repair L-isoaspartyl methyltransferase 2;CGSNL Gene Symbol=PIMT2;CGSNL Gene Name=PROTEIN REPAIR L-ISOASPARTYL METHYLTRANSFERASE 2;Oryzabase Gene Symbol Synonym(s)=OsPIMT2%2C OsPIMT2'-1%2C OsPIMT2'-2%2C deltaOsPIMT2;Oryzabase Gene Name Synonym(s)=Protein repair L-isoaspartyl methyltransferase 2%2C PROTEIN L-ISOASPARTYL O-METHYLTRANSFERASE 2;Note=L-isoaspartate methyltransferase%2C iso-Asp-containing protein repair;Transcript_evidence=KM675736;ORF_evidence=A3AUX8;GO=Biological Process: cellular protein modification process (GO:0006464),Molecular Function: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity (GO:0004719);InterPro=Protein-L-isoaspartate(D-aspartate) O-methyltransferase (IPR000682),S-adenosyl-L-methionine-dependent methyltransferase (IPR029063);Manual Curation=November 4%2C 2015;Literature_PMID=26438231;Oryzabase=20397
Chr04	irgsp1_rep	five_prime_UTR	24077281	24077518	.	-	.	Parent=Os04t0481400-02
Chr04	irgsp1_rep	CDS	24077107	24077280	.	-	0	Parent=Os04t0481400-02
Chr04	irgsp1_rep	CDS	24076242	24076512	.	-	0	Parent=Os04t0481400-02
Chr04	irgsp1_rep	CDS	24075875	24076039	.	-	2	Parent=Os04t0481400-02
Chr04	irgsp1_rep	CDS	24075484	24075734	.	-	2	Parent=Os04t0481400-02
Chr04	irgsp1_rep	three_prime_UTR	24075253	24075483	.	-	.	Parent=Os04t0481400-02
Chr04	irgsp1_rep	mRNA	24078142	24079931	.	-	.	ID=Os04t0481500-00;Name=Os04t0481500-00;Locus_id=Os04g0481500;Note=Similar to H0510A06.6 protein.;Transcript_evidence=FP097417 (DDBJ);ORF_evidence=Q25AJ9 (UniProt);InterPro=CENP-S complex%2C centromere protein X (IPR018552);TENOR=Os04t0481500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	24079929	24079931	.	-	.	Parent=Os04t0481500-00
Chr04	irgsp1_rep	CDS	24079887	24079928	.	-	0	Parent=Os04t0481500-00
Chr04	irgsp1_rep	CDS	24079700	24079795	.	-	0	Parent=Os04t0481500-00
Chr04	irgsp1_rep	CDS	24079510	24079549	.	-	0	Parent=Os04t0481500-00
Chr04	irgsp1_rep	CDS	24078444	24078497	.	-	2	Parent=Os04t0481500-00
Chr04	irgsp1_rep	CDS	24078243	24078346	.	-	2	Parent=Os04t0481500-00
Chr04	irgsp1_rep	three_prime_UTR	24078142	24078242	.	-	.	Parent=Os04t0481500-00
Chr04	irgsp1_rep	mRNA	24086371	24088075	.	+	.	ID=Os04t0481550-01;Name=Os04t0481550-01;Locus_id=Os04g0481550;Note=Hypothetical gene.;Transcript_evidence=AK318531 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065166H17;TENOR=Os04t0481550-01;KEGG=Os04t0481550-01
Chr04	irgsp1_rep	five_prime_UTR	24086371	24087547	.	+	.	Parent=Os04t0481550-01
Chr04	irgsp1_rep	CDS	24087548	24088075	.	+	0	Parent=Os04t0481550-01
Chr04	irgsp1_rep	mRNA	24086549	24088168	.	-	.	ID=Os04t0481600-00;Name=Os04t0481600-00;Locus_id=Os04g0481600;Oryzabase Gene Symbol Synonym(s)=OsWD40-101;Note=WD-40 repeat containing protein.;Transcript_evidence=AK374368 (DDBJ);ORF_evidence=Q25AJ6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);Oryzabase=10782;TENOR=Os04t0481600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	24086615	24088168	.	-	0	Parent=Os04t0481600-00
Chr04	irgsp1_rep	three_prime_UTR	24086549	24086614	.	-	.	Parent=Os04t0481600-00
Chr04	irgsp1_rep	mRNA	24096146	24098246	.	+	.	ID=Os04t0481700-01;Name=Os04t0481700-01;Locus_id=Os04g0481700;CGSNL Gene Symbol=MDR1;CGSNL Gene Name=MULTIDRUG RESISTANCE 1;Oryzabase Gene Symbol Synonym(s)=OsABCB15%2C ABCB15%2C OsPGP15%2C OsMDR1%2C OsMDR2%2C MDR2%2C OsSTA125;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCB subgroup member 15%2C P-Glycoprotein 15%2C multidrug resistance 1;Note=Similar to MDR-like ABC transporter.;Transcript_evidence=AK107554 (DDBJ%2C Best hit);ORF_evidence=Q8GU67 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);NIAS_FLcDNA=002-130-B02;Oryzabase=11934;TENOR=Os04t0481700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	24096146	24096160	.	+	.	Parent=Os04t0481700-01
Chr04	irgsp1_rep	CDS	24096161	24098173	.	+	0	Parent=Os04t0481700-01
Chr04	irgsp1_rep	three_prime_UTR	24098174	24098246	.	+	.	Parent=Os04t0481700-01
Chr04	irgsp1_rep	mRNA	24098311	24099631	.	-	.	ID=Os04t0481800-01;Name=Os04t0481800-01;Locus_id=Os04g0481800;Note=Membrane bound O-acyl transferase%2C MBOAT family protein.;Transcript_evidence=AK109152 (DDBJ%2C Best hit);ORF_evidence=Q25AJ4 (UniProt);InterPro=Membrane bound O-acyl transferase%2C MBOAT (IPR004299),Wax synthase (IPR017088);NIAS_FLcDNA=002-155-F11;Expression=AK109152;TENOR=Os04t0481800-01;KEGG=Os04t0481800-01
Chr04	irgsp1_rep	five_prime_UTR	24099566	24099631	.	-	.	Parent=Os04t0481800-01
Chr04	irgsp1_rep	CDS	24098516	24099565	.	-	0	Parent=Os04t0481800-01
Chr04	irgsp1_rep	three_prime_UTR	24098311	24098515	.	-	.	Parent=Os04t0481800-01
Chr04	irgsp1_rep	mRNA	24101427	24102538	.	-	.	ID=Os04t0481900-00;Name=Os04t0481900-00;Locus_id=Os04g0481900;Oryzabase Gene Symbol Synonym(s)=OsWS1%2C WS1;Oryzabase Gene Name Synonym(s)=wax synthase isoform 1;Note=Similar to H0510A06.12 protein.;Transcript_evidence=BT034476 (DDBJ);ORF_evidence=Q25AJ3 (UniProt);InterPro=Membrane bound O-acyl transferase%2C MBOAT (IPR004299),Wax synthase (IPR017088);Oryzabase=19891;TENOR=Os04t0481900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	24102465	24102538	.	-	.	Parent=Os04t0481900-00
Chr04	irgsp1_rep	CDS	24101427	24102464	.	-	0	Parent=Os04t0481900-00
Chr04	irgsp1_rep	mRNA	24103028	24104868	.	-	.	ID=Os04t0482000-01;Name=Os04t0482000-01;Locus_id=Os04g0482000;Oryzabase Gene Symbol Synonym(s)=OsMSRA2.1%2C MSRA2.1;Oryzabase Gene Name Synonym(s)=Methionine sulfoxide reductase A2.1;Note=Similar to Peptide methionine sulfoxide reductase.;Transcript_evidence=AK064801 (DDBJ%2C Best hit);ORF_evidence=Q7XUP7 (UniProt);GO=Biological Process: protein metabolic process (GO:0019538),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on a sulfur group of donors%2C disulfide as acceptor (GO:0016671);InterPro=Peptide methionine sulphoxide reductase MsrA (IPR002569);NIAS_FLcDNA=J013000D08;Oryzabase=20909;Expression=AK064801;TENOR=Os04t0482000-01;KEGG=Os04t0482000-01 (EC:1.8.4.11)
Chr04	irgsp1_rep	five_prime_UTR	24104791	24104868	.	-	.	Parent=Os04t0482000-01
Chr04	irgsp1_rep	CDS	24104464	24104790	.	-	0	Parent=Os04t0482000-01
Chr04	irgsp1_rep	CDS	24103416	24103652	.	-	0	Parent=Os04t0482000-01
Chr04	irgsp1_rep	three_prime_UTR	24103028	24103415	.	-	.	Parent=Os04t0482000-01
Chr04	irgsp1_rep	mRNA	24109091	24111210	.	-	.	ID=Os04t0482100-00;Name=Os04t0482100-00;Locus_id=Os04g0482100;Oryzabase Gene Symbol Synonym(s)=OsMSRA2.2%2C MSRA2.2;Oryzabase Gene Name Synonym(s)=Methionine sulfoxide reductase A2.2;Note=Similar to H0510A06.16 protein.;Transcript_evidence=EU973644 (DDBJ);ORF_evidence=Q7XUP6 (UniProt);GO=Biological Process: protein metabolic process (GO:0019538),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on a sulfur group of donors%2C disulfide as acceptor (GO:0016671);InterPro=Peptide methionine sulphoxide reductase MsrA (IPR002569);Oryzabase=20910;TENOR=Os04t0482100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	24111076	24111210	.	-	.	Parent=Os04t0482100-00
Chr04	irgsp1_rep	five_prime_UTR	24109759	24109827	.	-	.	Parent=Os04t0482100-00
Chr04	irgsp1_rep	CDS	24109423	24109758	.	-	0	Parent=Os04t0482100-00
Chr04	irgsp1_rep	CDS	24109091	24109327	.	-	0	Parent=Os04t0482100-00
Chr04	irgsp1_rep	mRNA	24115971	24118142	.	+	.	ID=Os04t0482300-01;Name=Os04t0482300-01;Locus_id=Os04g0482300;Note=Kelch related domain containing protein.;Transcript_evidence=AK064143 (DDBJ%2C Best hit);ORF_evidence=Q25AK5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: transcription cofactor activity (GO:0003712),Molecular Function: histone acetyltransferase activity (GO:0004402),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C TAZ-type (IPR000197),BTB/POZ-like (IPR000210),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069);NIAS_FLcDNA=002-103-B11;Expression=AK064143;TENOR=Os04t0482300-01;KEGG=Os04t0482300-01
Chr04	irgsp1_rep	five_prime_UTR	24115971	24116122	.	+	.	Parent=Os04t0482300-01
Chr04	irgsp1_rep	CDS	24116123	24116227	.	+	0	Parent=Os04t0482300-01
Chr04	irgsp1_rep	CDS	24116343	24116476	.	+	0	Parent=Os04t0482300-01
Chr04	irgsp1_rep	CDS	24116576	24117217	.	+	1	Parent=Os04t0482300-01
Chr04	irgsp1_rep	CDS	24117621	24117807	.	+	1	Parent=Os04t0482300-01
Chr04	irgsp1_rep	three_prime_UTR	24117808	24118142	.	+	.	Parent=Os04t0482300-01
Chr04	irgsp1_rep	mRNA	24125484	24126365	.	-	.	ID=Os04t0482600-01;Name=Os04t0482600-01;Locus_id=Os04g0482600;Note=Hypothetical conserved gene.;Transcript_evidence=AK063261 (DDBJ%2C Best hit);ORF_evidence=A2XUR8 (UniProt);NIAS_FLcDNA=001-113-A07;Expression=AK063261;TENOR=Os04t0482600-01;KEGG=Os04t0482600-01
Chr04	irgsp1_rep	five_prime_UTR	24126318	24126365	.	-	.	Parent=Os04t0482600-01
Chr04	irgsp1_rep	CDS	24126224	24126317	.	-	0	Parent=Os04t0482600-01
Chr04	irgsp1_rep	CDS	24125967	24126091	.	-	2	Parent=Os04t0482600-01
Chr04	irgsp1_rep	three_prime_UTR	24125484	24125966	.	-	.	Parent=Os04t0482600-01
Chr04	irgsp1_rep	mRNA	24129561	24133261	.	-	.	ID=Os04t0482700-01;Name=Os04t0482700-01;Locus_id=Os04g0482700;Note=Similar to H0525D09.10 protein.;Transcript_evidence=AK111072 (DDBJ%2C Best hit);ORF_evidence=Q01JV5 (UniProt);GO=Molecular Function: metalloendopeptidase activity (GO:0004222);InterPro=Peptidase M76%2C ATP23 (IPR019165);NIAS_FLcDNA=002-175-E07;Expression=AK111072;TENOR=Os04t0482700-01;KEGG=Os04t0482700-01
Chr04	irgsp1_rep	five_prime_UTR	24133196	24133261	.	-	.	Parent=Os04t0482700-01
Chr04	irgsp1_rep	CDS	24133060	24133195	.	-	0	Parent=Os04t0482700-01
Chr04	irgsp1_rep	CDS	24132823	24132947	.	-	2	Parent=Os04t0482700-01
Chr04	irgsp1_rep	CDS	24131954	24132091	.	-	0	Parent=Os04t0482700-01
Chr04	irgsp1_rep	CDS	24131748	24131831	.	-	0	Parent=Os04t0482700-01
Chr04	irgsp1_rep	CDS	24129834	24129968	.	-	0	Parent=Os04t0482700-01
Chr04	irgsp1_rep	three_prime_UTR	24129561	24129833	.	-	.	Parent=Os04t0482700-01
Chr04	irgsp1_rep	mRNA	24134006	24138398	.	-	.	ID=Os04t0482800-01;Name=Os04t0482800-01;Locus_id=Os04g0482800;Note=Similar to Topoisomerase-like protein.;Transcript_evidence=AK068497 (DDBJ%2C Best hit);ORF_evidence=Q01JV4 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Initiation factor eIF-4 gamma%2C MA3 (IPR003891),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013155G23;Expression=AK068497;TENOR=Os04t0482800-01;KEGG=Os04t0482800-01
Chr04	irgsp1_rep	five_prime_UTR	24138284	24138398	.	-	.	Parent=Os04t0482800-01
Chr04	irgsp1_rep	five_prime_UTR	24138112	24138145	.	-	.	Parent=Os04t0482800-01
Chr04	irgsp1_rep	CDS	24137973	24138111	.	-	0	Parent=Os04t0482800-01
Chr04	irgsp1_rep	CDS	24136220	24136311	.	-	2	Parent=Os04t0482800-01
Chr04	irgsp1_rep	CDS	24134355	24136109	.	-	0	Parent=Os04t0482800-01
Chr04	irgsp1_rep	three_prime_UTR	24134006	24134354	.	-	.	Parent=Os04t0482800-01
Chr04	irgsp1_rep	mRNA	24139367	24142410	.	-	.	ID=Os04t0482900-01;Name=Os04t0482900-01;Locus_id=Os04g0482900;Note=Similar to H0525D09.12 protein.;Transcript_evidence=AK100146 (DDBJ%2C Best hit);ORF_evidence=Q01JV3 (UniProt);NIAS_FLcDNA=J023013P08;Expression=AK100146;TENOR=Os04t0482900-01;KEGG=Os04t0482900-01
Chr04	irgsp1_rep	five_prime_UTR	24142269	24142410	.	-	.	Parent=Os04t0482900-01
Chr04	irgsp1_rep	CDS	24142221	24142268	.	-	0	Parent=Os04t0482900-01
Chr04	irgsp1_rep	CDS	24141973	24142122	.	-	0	Parent=Os04t0482900-01
Chr04	irgsp1_rep	CDS	24139587	24139766	.	-	0	Parent=Os04t0482900-01
Chr04	irgsp1_rep	three_prime_UTR	24139367	24139586	.	-	.	Parent=Os04t0482900-01
Chr04	irgsp1_rep	mRNA	24142868	24143920	.	+	.	ID=Os04t0482950-00;Name=Os04t0482950-00;Locus_id=Os04g0482950;Note=Hypothetical gene.;Transcript_evidence=CU405567 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os04t0482950-00;KEGG=Os04t0482950-00
Chr04	irgsp1_rep	five_prime_UTR	24142868	24143046	.	+	.	Parent=Os04t0482950-00
Chr04	irgsp1_rep	CDS	24143047	24143283	.	+	0	Parent=Os04t0482950-00
Chr04	irgsp1_rep	three_prime_UTR	24143284	24143920	.	+	.	Parent=Os04t0482950-00
Chr04	irgsp1_rep	mRNA	24145933	24147699	.	+	.	ID=Os04t0483000-01;Name=Os04t0483000-01;Locus_id=Os04g0483000;Note=Similar to H0525D09.13 protein.;Transcript_evidence=AK121996 (DDBJ%2C Best hit);ORF_evidence=Q01JV2 (UniProt);NIAS_FLcDNA=J033110C02;TENOR=Os04t0483000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	24145933	24146029	.	+	.	Parent=Os04t0483000-01
Chr04	irgsp1_rep	CDS	24146030	24146359	.	+	0	Parent=Os04t0483000-01
Chr04	irgsp1_rep	three_prime_UTR	24146360	24147699	.	+	.	Parent=Os04t0483000-01
Chr04	irgsp1_rep	mRNA	24156588	24161025	.	+	.	ID=Os04t0483200-01;Name=Os04t0483200-01;Locus_id=Os04g0483200;Note=Steroid nuclear receptor%2C ligand-binding domain containing protein.;Transcript_evidence=AK069389 (DDBJ%2C Best hit);ORF_evidence=Q01IG5 (UniProt);NIAS_FLcDNA=J023014J04;Expression=AK069389;TENOR=Os04t0483200-01;KEGG=Os04t0483200-01
Chr04	irgsp1_rep	five_prime_UTR	24156588	24157358	.	+	.	Parent=Os04t0483200-01
Chr04	irgsp1_rep	CDS	24157359	24157452	.	+	0	Parent=Os04t0483200-01
Chr04	irgsp1_rep	CDS	24158138	24158246	.	+	2	Parent=Os04t0483200-01
Chr04	irgsp1_rep	CDS	24158340	24158532	.	+	1	Parent=Os04t0483200-01
Chr04	irgsp1_rep	CDS	24158606	24158742	.	+	0	Parent=Os04t0483200-01
Chr04	irgsp1_rep	CDS	24159074	24159362	.	+	1	Parent=Os04t0483200-01
Chr04	irgsp1_rep	CDS	24159486	24159592	.	+	0	Parent=Os04t0483200-01
Chr04	irgsp1_rep	CDS	24159668	24159815	.	+	1	Parent=Os04t0483200-01
Chr04	irgsp1_rep	CDS	24160023	24160221	.	+	0	Parent=Os04t0483200-01
Chr04	irgsp1_rep	CDS	24160308	24160548	.	+	2	Parent=Os04t0483200-01
Chr04	irgsp1_rep	CDS	24160651	24160900	.	+	1	Parent=Os04t0483200-01
Chr04	irgsp1_rep	three_prime_UTR	24160901	24161025	.	+	.	Parent=Os04t0483200-01
Chr04	irgsp1_rep	mRNA	24156744	24159731	.	+	.	ID=Os04t0483200-02;Name=Os04t0483200-02;Locus_id=Os04g0483200;Note=Similar to H0805A05.1 protein.;Transcript_evidence=AK121909 (DDBJ%2C Best hit);ORF_evidence=Q01IG5 (UniProt);NIAS_FLcDNA=J033105O12;Expression=AK121909;TENOR=Os04t0483200-02;KEGG=Os04t0483200-02
Chr04	irgsp1_rep	five_prime_UTR	24156744	24157194	.	+	.	Parent=Os04t0483200-02
Chr04	irgsp1_rep	five_prime_UTR	24157284	24157358	.	+	.	Parent=Os04t0483200-02
Chr04	irgsp1_rep	CDS	24157359	24157452	.	+	0	Parent=Os04t0483200-02
Chr04	irgsp1_rep	CDS	24158138	24158246	.	+	2	Parent=Os04t0483200-02
Chr04	irgsp1_rep	CDS	24158340	24158532	.	+	1	Parent=Os04t0483200-02
Chr04	irgsp1_rep	CDS	24158606	24158742	.	+	0	Parent=Os04t0483200-02
Chr04	irgsp1_rep	CDS	24159074	24159362	.	+	1	Parent=Os04t0483200-02
Chr04	irgsp1_rep	CDS	24159486	24159592	.	+	0	Parent=Os04t0483200-02
Chr04	irgsp1_rep	CDS	24159668	24159731	.	+	1	Parent=Os04t0483200-02
Chr04	irgsp1_rep	mRNA	24161435	24165181	.	-	.	ID=Os04t0483400-01;Name=Os04t0483400-01;Locus_id=Os04g0483400;Note=Similar to H0805A05.2 protein.;Transcript_evidence=AK063531 (DDBJ%2C Best hit);ORF_evidence=Q01IG4 (UniProt);NIAS_FLcDNA=001-117-B03;TENOR=Os04t0483400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	24165180	24165181	.	-	.	Parent=Os04t0483400-01
Chr04	irgsp1_rep	CDS	24162905	24165179	.	-	0	Parent=Os04t0483400-01
Chr04	irgsp1_rep	CDS	24162317	24162374	.	-	2	Parent=Os04t0483400-01
Chr04	irgsp1_rep	CDS	24161628	24161763	.	-	1	Parent=Os04t0483400-01
Chr04	irgsp1_rep	three_prime_UTR	24161435	24161627	.	-	.	Parent=Os04t0483400-01
Chr04	irgsp1_rep	mRNA	24168477	24170948	.	+	.	ID=Os04t0483450-00;Name=Os04t0483450-00;Locus_id=Os04g0483450;Note=Hypothetical conserved gene.;Transcript_evidence=AK108648 (DDBJ%2C Secondary hit);ORF_evidence=Q53NG0 (UniProt);Expression=AK108648;TENOR=Os04t0483450-00;KEGG=Os04t0483450-00
Chr04	irgsp1_rep	five_prime_UTR	24168477	24168859	.	+	.	Parent=Os04t0483450-00
Chr04	irgsp1_rep	five_prime_UTR	24168866	24169146	.	+	.	Parent=Os04t0483450-00
Chr04	irgsp1_rep	CDS	24169147	24169270	.	+	0	Parent=Os04t0483450-00
Chr04	irgsp1_rep	CDS	24169478	24169560	.	+	2	Parent=Os04t0483450-00
Chr04	irgsp1_rep	CDS	24169752	24169775	.	+	0	Parent=Os04t0483450-00
Chr04	irgsp1_rep	three_prime_UTR	24169776	24169799	.	+	.	Parent=Os04t0483450-00
Chr04	irgsp1_rep	three_prime_UTR	24169806	24169876	.	+	.	Parent=Os04t0483450-00
Chr04	irgsp1_rep	three_prime_UTR	24170323	24170444	.	+	.	Parent=Os04t0483450-00
Chr04	irgsp1_rep	three_prime_UTR	24170584	24170948	.	+	.	Parent=Os04t0483450-00
Chr04	irgsp1_rep	mRNA	24175649	24178952	.	-	.	ID=Os04t0483500-01;Name=Os04t0483500-01;Locus_id=Os04g0483500;RAP-DB Gene Symbol Synonym(s)=KCR1%2C OsKCR1%2C WSL3;RAP-DB Gene Name Synonym(s)=beta-ketoacyl-CoA reductase 1%2C Wax crystal-sparse leaf 3;CGSNL Gene Symbol=KCR1;CGSNL Gene Name=BETA-KETOACYL-COA REDUCTASE 1;Oryzabase Gene Symbol Synonym(s)=OsKCR1%2C OsWSL3%2C WSL3;Oryzabase Gene Name Synonym(s)=beta-ketoacyl-CoA reductase 1%2C Wax crystal-sparse leaf 3;Note=Beta-ketoacyl-CoA reductase%2C Cuticular wax biosynthesis%2C Fatty acid elongation;Transcript_evidence=AK060512;ORF_evidence=Q7XQF8;InterPro=Short-chain dehydrogenase/reductase SDR (IPR002347),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-019-E03;Manual Curation=April 25%2C 2016;Literature_PMID=27106031;Oryzabase=18134;Expression=AK060512;TENOR=Os04t0483500-01;KEGG=Os04t0483500-01 (EC:1.1.1.-)
Chr04	irgsp1_rep	five_prime_UTR	24178860	24178952	.	-	.	Parent=Os04t0483500-01
Chr04	irgsp1_rep	CDS	24178231	24178859	.	-	0	Parent=Os04t0483500-01
Chr04	irgsp1_rep	CDS	24177024	24177093	.	-	1	Parent=Os04t0483500-01
Chr04	irgsp1_rep	CDS	24175898	24176155	.	-	0	Parent=Os04t0483500-01
Chr04	irgsp1_rep	three_prime_UTR	24175649	24175897	.	-	.	Parent=Os04t0483500-01
Chr04	irgsp1_rep	mRNA	24175898	24178586	.	+	.	ID=Os04t0483550-00;Name=Os04t0483550-00;Locus_id=Os04g0483550;Note=Hypothetical gene.;Transcript_evidence=BT019228 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0483550-00;KEGG=Os04t0483550-00
Chr04	irgsp1_rep	five_prime_UTR	24175898	24176143	.	+	.	Parent=Os04t0483550-00
Chr04	irgsp1_rep	five_prime_UTR	24177007	24177008	.	+	.	Parent=Os04t0483550-00
Chr04	irgsp1_rep	CDS	24177009	24177091	.	+	0	Parent=Os04t0483550-00
Chr04	irgsp1_rep	CDS	24178229	24178586	.	+	1	Parent=Os04t0483550-00
Chr04	irgsp1_rep	mRNA	24180828	24187260	.	-	.	ID=Os04t0483600-01;Name=Os04t0483600-01;Locus_id=Os04g0483600;Note=Kelch-type beta propeller domain containing protein.;Transcript_evidence=AK073227 (DDBJ%2C Best hit);ORF_evidence=Q01IG2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Kelch repeat type 2 (IPR011498),Kelch-type beta propeller (IPR015915);NIAS_FLcDNA=J033024H06;Expression=AK073227;TENOR=Os04t0483600-01;KEGG=Os04t0483600-01
Chr04	irgsp1_rep	five_prime_UTR	24187212	24187260	.	-	.	Parent=Os04t0483600-01
Chr04	irgsp1_rep	CDS	24187080	24187211	.	-	0	Parent=Os04t0483600-01
Chr04	irgsp1_rep	CDS	24186687	24186773	.	-	0	Parent=Os04t0483600-01
Chr04	irgsp1_rep	CDS	24186182	24186250	.	-	0	Parent=Os04t0483600-01
Chr04	irgsp1_rep	CDS	24185907	24186039	.	-	0	Parent=Os04t0483600-01
Chr04	irgsp1_rep	CDS	24185767	24185813	.	-	2	Parent=Os04t0483600-01
Chr04	irgsp1_rep	CDS	24185240	24185326	.	-	0	Parent=Os04t0483600-01
Chr04	irgsp1_rep	CDS	24185071	24185132	.	-	0	Parent=Os04t0483600-01
Chr04	irgsp1_rep	CDS	24184771	24184813	.	-	1	Parent=Os04t0483600-01
Chr04	irgsp1_rep	CDS	24184594	24184674	.	-	0	Parent=Os04t0483600-01
Chr04	irgsp1_rep	CDS	24184348	24184467	.	-	0	Parent=Os04t0483600-01
Chr04	irgsp1_rep	CDS	24184116	24184221	.	-	0	Parent=Os04t0483600-01
Chr04	irgsp1_rep	CDS	24183910	24183973	.	-	2	Parent=Os04t0483600-01
Chr04	irgsp1_rep	CDS	24183337	24183379	.	-	1	Parent=Os04t0483600-01
Chr04	irgsp1_rep	CDS	24182792	24183010	.	-	0	Parent=Os04t0483600-01
Chr04	irgsp1_rep	CDS	24182551	24182712	.	-	0	Parent=Os04t0483600-01
Chr04	irgsp1_rep	CDS	24182279	24182398	.	-	0	Parent=Os04t0483600-01
Chr04	irgsp1_rep	CDS	24181668	24181820	.	-	0	Parent=Os04t0483600-01
Chr04	irgsp1_rep	CDS	24181417	24181503	.	-	0	Parent=Os04t0483600-01
Chr04	irgsp1_rep	CDS	24181240	24181308	.	-	0	Parent=Os04t0483600-01
Chr04	irgsp1_rep	CDS	24181048	24181152	.	-	0	Parent=Os04t0483600-01
Chr04	irgsp1_rep	three_prime_UTR	24180828	24181047	.	-	.	Parent=Os04t0483600-01
Chr04	irgsp1_rep	mRNA	24180805	24185070	.	-	.	ID=Os04t0483600-02;Name=Os04t0483600-02;Locus_id=Os04g0483600;Note=Hypothetical conserved gene.;Transcript_evidence=AK073905 (DDBJ%2C Best hit);ORF_evidence=Q7XQF7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Kelch repeat type 2 (IPR011498),Kelch-type beta propeller (IPR015915);NIAS_FLcDNA=J033075M04;Expression=AK073905;TENOR=Os04t0483600-02;KEGG=Os04t0483600-02
Chr04	irgsp1_rep	five_prime_UTR	24184855	24185070	.	-	.	Parent=Os04t0483600-02
Chr04	irgsp1_rep	CDS	24184771	24184854	.	-	0	Parent=Os04t0483600-02
Chr04	irgsp1_rep	CDS	24184594	24184674	.	-	0	Parent=Os04t0483600-02
Chr04	irgsp1_rep	CDS	24184348	24184467	.	-	0	Parent=Os04t0483600-02
Chr04	irgsp1_rep	CDS	24184116	24184221	.	-	0	Parent=Os04t0483600-02
Chr04	irgsp1_rep	CDS	24183910	24183973	.	-	2	Parent=Os04t0483600-02
Chr04	irgsp1_rep	CDS	24183337	24183379	.	-	1	Parent=Os04t0483600-02
Chr04	irgsp1_rep	CDS	24182792	24183010	.	-	0	Parent=Os04t0483600-02
Chr04	irgsp1_rep	CDS	24182551	24182712	.	-	0	Parent=Os04t0483600-02
Chr04	irgsp1_rep	CDS	24182279	24182398	.	-	0	Parent=Os04t0483600-02
Chr04	irgsp1_rep	CDS	24181656	24181820	.	-	0	Parent=Os04t0483600-02
Chr04	irgsp1_rep	three_prime_UTR	24181417	24181655	.	-	.	Parent=Os04t0483600-02
Chr04	irgsp1_rep	three_prime_UTR	24181240	24181308	.	-	.	Parent=Os04t0483600-02
Chr04	irgsp1_rep	three_prime_UTR	24180805	24181152	.	-	.	Parent=Os04t0483600-02
Chr04	irgsp1_rep	mRNA	24213841	24217644	.	-	.	ID=Os04t0484300-01;Name=Os04t0484300-01;Locus_id=Os04g0484300;Note=Conserved hypothetical protein.;Transcript_evidence=AK242627 (DDBJ%2C Best hit);ORF_evidence=Q7XQF1 (UniProt);NIAS_FLcDNA=J090020I12;TENOR=Os04t0484300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	24216962	24217644	.	-	.	Parent=Os04t0484300-01
Chr04	irgsp1_rep	CDS	24216927	24216961	.	-	0	Parent=Os04t0484300-01
Chr04	irgsp1_rep	CDS	24215174	24215292	.	-	1	Parent=Os04t0484300-01
Chr04	irgsp1_rep	CDS	24214567	24214789	.	-	2	Parent=Os04t0484300-01
Chr04	irgsp1_rep	CDS	24214107	24214113	.	-	1	Parent=Os04t0484300-01
Chr04	irgsp1_rep	three_prime_UTR	24213841	24214106	.	-	.	Parent=Os04t0484300-01
Chr04	irgsp1_rep	mRNA	24229248	24236905	.	+	.	ID=Os04t0484800-01;Name=Os04t0484800-01;Locus_id=Os04g0484800;Oryzabase Gene Symbol Synonym(s)=APC2%2C OsAPC2;Oryzabase Gene Name Synonym(s)=ANAPHASE PROMOTING COMPLEX 2;Note=Cullin family protein.;Transcript_evidence=AK068962 (DDBJ%2C Best hit);ORF_evidence=Q01IF9 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Cellular Component: cullin-RING ubiquitin ligase complex (GO:0031461),Molecular Function: ubiquitin protein ligase binding (GO:0031625);InterPro=Cullin%2C N-terminal (IPR001373),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Anaphase-promoting complex subunit 2%2C C-terminal (IPR014786),Cullin homology (IPR016158);NIAS_FLcDNA=J013169P12;Oryzabase=21057;Expression=AK068962;TENOR=Os04t0484800-01;KEGG=Os04t0484800-01
Chr04	irgsp1_rep	five_prime_UTR	24229248	24229325	.	+	.	Parent=Os04t0484800-01
Chr04	irgsp1_rep	CDS	24229326	24229511	.	+	0	Parent=Os04t0484800-01
Chr04	irgsp1_rep	CDS	24230294	24230383	.	+	0	Parent=Os04t0484800-01
Chr04	irgsp1_rep	CDS	24230743	24230974	.	+	0	Parent=Os04t0484800-01
Chr04	irgsp1_rep	CDS	24231943	24232220	.	+	2	Parent=Os04t0484800-01
Chr04	irgsp1_rep	CDS	24232339	24232410	.	+	0	Parent=Os04t0484800-01
Chr04	irgsp1_rep	CDS	24232817	24233058	.	+	0	Parent=Os04t0484800-01
Chr04	irgsp1_rep	CDS	24233544	24233960	.	+	1	Parent=Os04t0484800-01
Chr04	irgsp1_rep	CDS	24234059	24234260	.	+	1	Parent=Os04t0484800-01
Chr04	irgsp1_rep	CDS	24234387	24234501	.	+	0	Parent=Os04t0484800-01
Chr04	irgsp1_rep	CDS	24234584	24234669	.	+	2	Parent=Os04t0484800-01
Chr04	irgsp1_rep	CDS	24234998	24235117	.	+	0	Parent=Os04t0484800-01
Chr04	irgsp1_rep	CDS	24235194	24235282	.	+	0	Parent=Os04t0484800-01
Chr04	irgsp1_rep	CDS	24235351	24235432	.	+	1	Parent=Os04t0484800-01
Chr04	irgsp1_rep	CDS	24235835	24236026	.	+	0	Parent=Os04t0484800-01
Chr04	irgsp1_rep	CDS	24236150	24236216	.	+	0	Parent=Os04t0484800-01
Chr04	irgsp1_rep	CDS	24236307	24236431	.	+	2	Parent=Os04t0484800-01
Chr04	irgsp1_rep	three_prime_UTR	24236432	24236477	.	+	.	Parent=Os04t0484800-01
Chr04	irgsp1_rep	three_prime_UTR	24236569	24236905	.	+	.	Parent=Os04t0484800-01
Chr04	irgsp1_rep	mRNA	24229260	24236490	.	-	.	ID=Os04t0484850-00;Name=Os04t0484850-00;Locus_id=Os04g0484850;Note=Hypothetical protein.;Transcript_evidence=tplb0056g14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0484850-00
Chr04	irgsp1_rep	five_prime_UTR	24236303	24236490	.	-	.	Parent=Os04t0484850-00
Chr04	irgsp1_rep	five_prime_UTR	24236148	24236212	.	-	.	Parent=Os04t0484850-00
Chr04	irgsp1_rep	five_prime_UTR	24235833	24236024	.	-	.	Parent=Os04t0484850-00
Chr04	irgsp1_rep	five_prime_UTR	24235366	24235430	.	-	.	Parent=Os04t0484850-00
Chr04	irgsp1_rep	five_prime_UTR	24235201	24235291	.	-	.	Parent=Os04t0484850-00
Chr04	irgsp1_rep	five_prime_UTR	24234980	24235129	.	-	.	Parent=Os04t0484850-00
Chr04	irgsp1_rep	five_prime_UTR	24234591	24234653	.	-	.	Parent=Os04t0484850-00
Chr04	irgsp1_rep	five_prime_UTR	24234385	24234507	.	-	.	Parent=Os04t0484850-00
Chr04	irgsp1_rep	five_prime_UTR	24234051	24234258	.	-	.	Parent=Os04t0484850-00
Chr04	irgsp1_rep	five_prime_UTR	24233542	24233953	.	-	.	Parent=Os04t0484850-00
Chr04	irgsp1_rep	five_prime_UTR	24232819	24233056	.	-	.	Parent=Os04t0484850-00
Chr04	irgsp1_rep	five_prime_UTR	24232337	24232412	.	-	.	Parent=Os04t0484850-00
Chr04	irgsp1_rep	five_prime_UTR	24231932	24232218	.	-	.	Parent=Os04t0484850-00
Chr04	irgsp1_rep	five_prime_UTR	24230731	24230971	.	-	.	Parent=Os04t0484850-00
Chr04	irgsp1_rep	five_prime_UTR	24230276	24230379	.	-	.	Parent=Os04t0484850-00
Chr04	irgsp1_rep	five_prime_UTR	24229499	24229501	.	-	.	Parent=Os04t0484850-00
Chr04	irgsp1_rep	CDS	24229260	24229498	.	-	0	Parent=Os04t0484850-00
Chr04	irgsp1_rep	mRNA	24237179	24240711	.	-	.	ID=Os04t0484900-01;Name=Os04t0484900-01;Locus_id=Os04g0484900;RAP-DB Gene Symbol Synonym(s)=OsELP3;CGSNL Gene Symbol=HAG703;CGSNL Gene Name=HISTONE ACETYLTRANSFERASE HAG703;Oryzabase Gene Symbol Synonym(s)=OsHAG703%2C OsELP3%2C ELP3;Oryzabase Gene Name Synonym(s)=Histone acetyltransferase HAG703;Note=Ortholog of yeast ELP3%2C Catalytic subunit of Elongator%2C Leaf development%2C Meristem function%2C tRNA maturation and histone acetylation;Transcript_evidence=AK122179;ORF_evidence=Q7X7L3;GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: N-acetyltransferase activity (GO:0008080),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=Radical SAM%2C alpha/beta horseshoe (IPR023404),Acyl-CoA N-acyltransferase (IPR016181),Elongator complex protein 3-like (IPR034687),Radical SAM (IPR007197),Elp3/MiaB/NifB (IPR006638),Radical SAM%2C C-terminal extension (IPR032432),GNAT domain (IPR000182);NIAS_FLcDNA=J033149C03;Manual Curation=July 13%2C 2020;Literature_PMID=32652697;Oryzabase=11172;Expression=AK122179;TENOR=Os04t0484900-01;KEGG=Os04t0484900-01 (EC:2.3.1.48)
Chr04	irgsp1_rep	five_prime_UTR	24240664	24240711	.	-	.	Parent=Os04t0484900-01
Chr04	irgsp1_rep	CDS	24240164	24240663	.	-	0	Parent=Os04t0484900-01
Chr04	irgsp1_rep	CDS	24239677	24239746	.	-	1	Parent=Os04t0484900-01
Chr04	irgsp1_rep	CDS	24239390	24239562	.	-	0	Parent=Os04t0484900-01
Chr04	irgsp1_rep	CDS	24239086	24239260	.	-	1	Parent=Os04t0484900-01
Chr04	irgsp1_rep	CDS	24238796	24238962	.	-	0	Parent=Os04t0484900-01
Chr04	irgsp1_rep	CDS	24238457	24238676	.	-	1	Parent=Os04t0484900-01
Chr04	irgsp1_rep	CDS	24238260	24238364	.	-	0	Parent=Os04t0484900-01
Chr04	irgsp1_rep	CDS	24237829	24237981	.	-	0	Parent=Os04t0484900-01
Chr04	irgsp1_rep	CDS	24237289	24237447	.	-	0	Parent=Os04t0484900-01
Chr04	irgsp1_rep	three_prime_UTR	24237179	24237288	.	-	.	Parent=Os04t0484900-01
Chr04	irgsp1_rep	mRNA	24240921	24243702	.	+	.	ID=Os04t0485000-01;Name=Os04t0485000-01;Locus_id=Os04g0485000;CGSNL Gene Symbol=RPN7;CGSNL Gene Name=19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 7;Oryzabase Gene Symbol Synonym(s)=OsRpn7%2C Rpn7;Oryzabase Gene Name Synonym(s)=19S regulatory particle non-ATPase subunit 7%2C RP non-ATPase 7;Note=Similar to 26S proteasome subunit RPN7.;Transcript_evidence=AK068887 (DDBJ%2C Best hit),AK104327 (DDBJ%2C Best hit);ORF_evidence=Q8W425 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Proteasome component (PCI) domain (IPR000717),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),26S proteasome%2C regulatory subunit Rpn7 (IPR019585);NIAS_FLcDNA=J023002M12,001-028-F11;Oryzabase=20208;TENOR=Os04t0485000-01
Chr04	irgsp1_rep	five_prime_UTR	24240921	24241046	.	+	.	Parent=Os04t0485000-01
Chr04	irgsp1_rep	CDS	24241047	24241191	.	+	0	Parent=Os04t0485000-01
Chr04	irgsp1_rep	CDS	24241394	24241508	.	+	2	Parent=Os04t0485000-01
Chr04	irgsp1_rep	CDS	24242084	24242174	.	+	1	Parent=Os04t0485000-01
Chr04	irgsp1_rep	CDS	24242258	24242403	.	+	0	Parent=Os04t0485000-01
Chr04	irgsp1_rep	CDS	24242508	24242727	.	+	1	Parent=Os04t0485000-01
Chr04	irgsp1_rep	CDS	24242800	24242908	.	+	0	Parent=Os04t0485000-01
Chr04	irgsp1_rep	CDS	24243036	24243204	.	+	2	Parent=Os04t0485000-01
Chr04	irgsp1_rep	CDS	24243309	24243483	.	+	1	Parent=Os04t0485000-01
Chr04	irgsp1_rep	three_prime_UTR	24243484	24243702	.	+	.	Parent=Os04t0485000-01
Chr04	irgsp1_rep	mRNA	24243991	24247747	.	-	.	ID=Os04t0485100-01;Name=Os04t0485100-01;Locus_id=Os04g0485100;CGSNL Gene Symbol=PP2A-B'ETA;CGSNL Gene Name=PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' ETA;Oryzabase Gene Symbol Synonym(s)=OsPP2A-B'eta%2C OsB'eta;Oryzabase Gene Name Synonym(s)=protein phosphatase 2A B'eta subunit;Note=Similar to Protein phosphatase 2A B' regulatory subunit.;Transcript_evidence=AK103052 (DDBJ%2C Best hit);ORF_evidence=Q01IF6 (UniProt);GO=Biological Process: signal transduction (GO:0007165),Cellular Component: protein phosphatase type 2A complex (GO:0000159),Molecular Function: binding (GO:0005488),Molecular Function: protein phosphatase type 2A regulator activity (GO:0008601);InterPro=Protein phosphatase 2A%2C regulatory B subunit%2C B56 (IPR002554),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033117I03;Oryzabase=13915;TENOR=Os04t0485100-01
Chr04	irgsp1_rep	five_prime_UTR	24247178	24247747	.	-	.	Parent=Os04t0485100-01
Chr04	irgsp1_rep	CDS	24246005	24247177	.	-	0	Parent=Os04t0485100-01
Chr04	irgsp1_rep	CDS	24244260	24244616	.	-	0	Parent=Os04t0485100-01
Chr04	irgsp1_rep	three_prime_UTR	24243991	24244259	.	-	.	Parent=Os04t0485100-01
Chr04	irgsp1_rep	mRNA	24243991	24247223	.	-	.	ID=Os04t0485100-02;Name=Os04t0485100-02;Locus_id=Os04g0485100;CGSNL Gene Symbol=PP2A-B'ETA;CGSNL Gene Name=PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' ETA;Oryzabase Gene Symbol Synonym(s)=OsPP2A-B'eta%2C OsB'eta;Oryzabase Gene Name Synonym(s)=protein phosphatase 2A B'eta subunit;Note=Similar to Protein phosphatase 2A B' regulatory subunit.;Transcript_evidence=AK101208 (DDBJ%2C Best hit);ORF_evidence=Q01IF6 (UniProt);GO=Biological Process: signal transduction (GO:0007165),Cellular Component: protein phosphatase type 2A complex (GO:0000159),Molecular Function: binding (GO:0005488),Molecular Function: protein phosphatase type 2A regulator activity (GO:0008601);InterPro=Protein phosphatase 2A%2C regulatory B subunit%2C B56 (IPR002554),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033031A03;Oryzabase=13915;TENOR=Os04t0485100-02
Chr04	irgsp1_rep	five_prime_UTR	24247178	24247223	.	-	.	Parent=Os04t0485100-02
Chr04	irgsp1_rep	CDS	24246005	24247177	.	-	0	Parent=Os04t0485100-02
Chr04	irgsp1_rep	CDS	24244260	24244616	.	-	0	Parent=Os04t0485100-02
Chr04	irgsp1_rep	three_prime_UTR	24243991	24244259	.	-	.	Parent=Os04t0485100-02
Chr04	irgsp1_rep	mRNA	24253332	24257461	.	+	.	ID=Os04t0485200-01;Name=Os04t0485200-01;Locus_id=Os04g0485200;Note=UBX domain containing protein.;Transcript_evidence=AK069013 (DDBJ%2C Best hit),AK061463 (DDBJ%2C Best hit);ORF_evidence=Q01IF5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=UBX (IPR001012);NIAS_FLcDNA=J023001P21,006-308-B12;TENOR=Os04t0485200-01
Chr04	irgsp1_rep	CDS	24253332	24253526	.	+	0	Parent=Os04t0485200-01
Chr04	irgsp1_rep	CDS	24254555	24254663	.	+	0	Parent=Os04t0485200-01
Chr04	irgsp1_rep	CDS	24254764	24254832	.	+	2	Parent=Os04t0485200-01
Chr04	irgsp1_rep	CDS	24254952	24255025	.	+	2	Parent=Os04t0485200-01
Chr04	irgsp1_rep	CDS	24255124	24255253	.	+	0	Parent=Os04t0485200-01
Chr04	irgsp1_rep	CDS	24256033	24256137	.	+	2	Parent=Os04t0485200-01
Chr04	irgsp1_rep	CDS	24256242	24256452	.	+	2	Parent=Os04t0485200-01
Chr04	irgsp1_rep	CDS	24257094	24257097	.	+	1	Parent=Os04t0485200-01
Chr04	irgsp1_rep	three_prime_UTR	24257098	24257461	.	+	.	Parent=Os04t0485200-01
Chr04	irgsp1_rep	mRNA	24261434	24267801	.	+	.	ID=Os04t0485300-01;Name=Os04t0485300-01;Locus_id=Os04g0485300;Oryzabase Gene Symbol Synonym(s)=OsG6PDH2%2C OsG6PDH1%2C OsG6PDH;Oryzabase Gene Name Synonym(s)=d-glucose 6-phosphate dehydrogenase 2%2C Glucose-6-phosphate dehydrogenase 1%2C cytosolic G6PDH;Note=Glucose-6-phosphate dehydrogenase.;Transcript_evidence=AK067410 (DDBJ%2C Best hit);ORF_evidence=Q8RY51 (UniProt);GO=Biological Process: glucose metabolic process (GO:0006006),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: glucose-6-phosphate dehydrogenase activity (GO:0004345),Molecular Function: NADP binding (GO:0050661);InterPro=Glucose-6-phosphate dehydrogenase (IPR001282),NAD(P)-binding domain (IPR016040),Glucose-6-phosphate dehydrogenase%2C active site (IPR019796),Glucose-6-phosphate dehydrogenase%2C NAD-binding (IPR022674),Glucose-6-phosphate dehydrogenase%2C C-terminal (IPR022675);NIAS_FLcDNA=J013100H21;Oryzabase=14995;Expression=AK067410;TENOR=Os04t0485300-01;KEGG=Os04t0485300-01 (EC:1.1.1.49)
Chr04	irgsp1_rep	five_prime_UTR	24261434	24261578	.	+	.	Parent=Os04t0485300-01
Chr04	irgsp1_rep	five_prime_UTR	24262766	24262804	.	+	.	Parent=Os04t0485300-01
Chr04	irgsp1_rep	CDS	24262805	24262972	.	+	0	Parent=Os04t0485300-01
Chr04	irgsp1_rep	CDS	24263336	24263421	.	+	0	Parent=Os04t0485300-01
Chr04	irgsp1_rep	CDS	24263741	24263789	.	+	1	Parent=Os04t0485300-01
Chr04	irgsp1_rep	CDS	24263862	24264042	.	+	0	Parent=Os04t0485300-01
Chr04	irgsp1_rep	CDS	24264211	24264359	.	+	2	Parent=Os04t0485300-01
Chr04	irgsp1_rep	CDS	24264445	24264513	.	+	0	Parent=Os04t0485300-01
Chr04	irgsp1_rep	CDS	24264838	24264896	.	+	0	Parent=Os04t0485300-01
Chr04	irgsp1_rep	CDS	24265362	24265395	.	+	1	Parent=Os04t0485300-01
Chr04	irgsp1_rep	CDS	24265680	24265754	.	+	0	Parent=Os04t0485300-01
Chr04	irgsp1_rep	CDS	24265885	24266032	.	+	0	Parent=Os04t0485300-01
Chr04	irgsp1_rep	CDS	24266166	24266261	.	+	2	Parent=Os04t0485300-01
Chr04	irgsp1_rep	CDS	24266787	24266857	.	+	2	Parent=Os04t0485300-01
Chr04	irgsp1_rep	CDS	24266986	24267101	.	+	0	Parent=Os04t0485300-01
Chr04	irgsp1_rep	CDS	24267216	24267261	.	+	1	Parent=Os04t0485300-01
Chr04	irgsp1_rep	CDS	24267374	24267544	.	+	0	Parent=Os04t0485300-01
Chr04	irgsp1_rep	three_prime_UTR	24267545	24267801	.	+	.	Parent=Os04t0485300-01
Chr04	irgsp1_rep	mRNA	24261458	24267726	.	+	.	ID=Os04t0485300-02;Name=Os04t0485300-02;Locus_id=Os04g0485300;Oryzabase Gene Symbol Synonym(s)=OsG6PDH2%2C OsG6PDH1%2C OsG6PDH;Oryzabase Gene Name Synonym(s)=d-glucose 6-phosphate dehydrogenase 2%2C Glucose-6-phosphate dehydrogenase 1%2C cytosolic G6PDH;Note=Glucose-6-phosphate dehydrogenase.;Transcript_evidence=AK101101 (DDBJ%2C Best hit);ORF_evidence=Q8RY51 (UniProt);GO=Biological Process: glucose metabolic process (GO:0006006),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: glucose-6-phosphate dehydrogenase activity (GO:0004345),Molecular Function: NADP binding (GO:0050661);InterPro=Glucose-6-phosphate dehydrogenase (IPR001282),NAD(P)-binding domain (IPR016040),Glucose-6-phosphate dehydrogenase%2C active site (IPR019796),Glucose-6-phosphate dehydrogenase%2C NAD-binding (IPR022674),Glucose-6-phosphate dehydrogenase%2C C-terminal (IPR022675);NIAS_FLcDNA=J033025A18;Oryzabase=14995;Expression=AK101101;TENOR=Os04t0485300-02;KEGG=Os04t0485300-02 (EC:1.1.1.49)
Chr04	irgsp1_rep	five_prime_UTR	24261458	24261578	.	+	.	Parent=Os04t0485300-02
Chr04	irgsp1_rep	five_prime_UTR	24262766	24262804	.	+	.	Parent=Os04t0485300-02
Chr04	irgsp1_rep	CDS	24262805	24262972	.	+	0	Parent=Os04t0485300-02
Chr04	irgsp1_rep	CDS	24263336	24263421	.	+	0	Parent=Os04t0485300-02
Chr04	irgsp1_rep	CDS	24263741	24263789	.	+	1	Parent=Os04t0485300-02
Chr04	irgsp1_rep	CDS	24263862	24264042	.	+	0	Parent=Os04t0485300-02
Chr04	irgsp1_rep	CDS	24264211	24264359	.	+	2	Parent=Os04t0485300-02
Chr04	irgsp1_rep	CDS	24264445	24264513	.	+	0	Parent=Os04t0485300-02
Chr04	irgsp1_rep	CDS	24264838	24264896	.	+	0	Parent=Os04t0485300-02
Chr04	irgsp1_rep	CDS	24265362	24265395	.	+	1	Parent=Os04t0485300-02
Chr04	irgsp1_rep	CDS	24265680	24265754	.	+	0	Parent=Os04t0485300-02
Chr04	irgsp1_rep	CDS	24265885	24266032	.	+	0	Parent=Os04t0485300-02
Chr04	irgsp1_rep	CDS	24266166	24266261	.	+	2	Parent=Os04t0485300-02
Chr04	irgsp1_rep	CDS	24266787	24266857	.	+	2	Parent=Os04t0485300-02
Chr04	irgsp1_rep	CDS	24266986	24267101	.	+	0	Parent=Os04t0485300-02
Chr04	irgsp1_rep	CDS	24267216	24267261	.	+	1	Parent=Os04t0485300-02
Chr04	irgsp1_rep	CDS	24267374	24267544	.	+	0	Parent=Os04t0485300-02
Chr04	irgsp1_rep	three_prime_UTR	24267545	24267726	.	+	.	Parent=Os04t0485300-02
Chr04	irgsp1_rep	mRNA	24261536	24267726	.	+	.	ID=Os04t0485300-03;Name=Os04t0485300-03;Locus_id=Os04g0485300;Oryzabase Gene Symbol Synonym(s)=OsG6PDH2%2C OsG6PDH1%2C OsG6PDH;Oryzabase Gene Name Synonym(s)=d-glucose 6-phosphate dehydrogenase 2%2C Glucose-6-phosphate dehydrogenase 1%2C cytosolic G6PDH;Note=Similar to Glucose-6-phosphate 1-dehydrogenase.;Transcript_evidence=AK100545 (DDBJ%2C Best hit);ORF_evidence=Q8RY51 (UniProt);GO=Biological Process: glucose metabolic process (GO:0006006),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: glucose-6-phosphate dehydrogenase activity (GO:0004345),Molecular Function: NADP binding (GO:0050661);InterPro=Glucose-6-phosphate dehydrogenase (IPR001282),NAD(P)-binding domain (IPR016040),Glucose-6-phosphate dehydrogenase%2C active site (IPR019796),Glucose-6-phosphate dehydrogenase%2C NAD-binding (IPR022674),Glucose-6-phosphate dehydrogenase%2C C-terminal (IPR022675);NIAS_FLcDNA=J023102M14;Oryzabase=14995;Expression=AK100545;TENOR=Os04t0485300-03;KEGG=Os04t0485300-03 (EC:1.1.1.49)
Chr04	irgsp1_rep	five_prime_UTR	24261536	24261578	.	+	.	Parent=Os04t0485300-03
Chr04	irgsp1_rep	five_prime_UTR	24262766	24262804	.	+	.	Parent=Os04t0485300-03
Chr04	irgsp1_rep	CDS	24262805	24262972	.	+	0	Parent=Os04t0485300-03
Chr04	irgsp1_rep	CDS	24263336	24263421	.	+	0	Parent=Os04t0485300-03
Chr04	irgsp1_rep	CDS	24263741	24263789	.	+	1	Parent=Os04t0485300-03
Chr04	irgsp1_rep	CDS	24263862	24264042	.	+	0	Parent=Os04t0485300-03
Chr04	irgsp1_rep	CDS	24264211	24264359	.	+	2	Parent=Os04t0485300-03
Chr04	irgsp1_rep	CDS	24264445	24264513	.	+	0	Parent=Os04t0485300-03
Chr04	irgsp1_rep	CDS	24264838	24264896	.	+	0	Parent=Os04t0485300-03
Chr04	irgsp1_rep	CDS	24265362	24265434	.	+	1	Parent=Os04t0485300-03
Chr04	irgsp1_rep	three_prime_UTR	24265435	24265754	.	+	.	Parent=Os04t0485300-03
Chr04	irgsp1_rep	three_prime_UTR	24265885	24266032	.	+	.	Parent=Os04t0485300-03
Chr04	irgsp1_rep	three_prime_UTR	24266166	24266261	.	+	.	Parent=Os04t0485300-03
Chr04	irgsp1_rep	three_prime_UTR	24266787	24266857	.	+	.	Parent=Os04t0485300-03
Chr04	irgsp1_rep	three_prime_UTR	24266986	24267101	.	+	.	Parent=Os04t0485300-03
Chr04	irgsp1_rep	three_prime_UTR	24267216	24267261	.	+	.	Parent=Os04t0485300-03
Chr04	irgsp1_rep	three_prime_UTR	24267374	24267726	.	+	.	Parent=Os04t0485300-03
Chr04	irgsp1_rep	mRNA	24267372	24267728	.	+	.	ID=Os04t0485300-04;Name=Os04t0485300-04;Locus_id=Os04g0485300;Oryzabase Gene Symbol Synonym(s)=OsG6PDH2%2C OsG6PDH1%2C OsG6PDH;Oryzabase Gene Name Synonym(s)=d-glucose 6-phosphate dehydrogenase 2%2C Glucose-6-phosphate dehydrogenase 1%2C cytosolic G6PDH;Note=Similar to Glucose-6-phosphate 1-dehydrogenase.;Transcript_evidence=AK061890 (DDBJ%2C Best hit);ORF_evidence=Q8RY51 (UniProt);GO=Biological Process: glucose metabolic process (GO:0006006),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: glucose-6-phosphate dehydrogenase activity (GO:0004345),Molecular Function: NADP binding (GO:0050661);InterPro=Glucose-6-phosphate dehydrogenase (IPR001282),Glucose-6-phosphate dehydrogenase%2C C-terminal (IPR022675);NIAS_FLcDNA=001-041-G02;Oryzabase=14995;Expression=AK061890;TENOR=Os04t0485300-04;KEGG=Os04t0485300-04 (EC:1.1.1.49)
Chr04	irgsp1_rep	five_prime_UTR	24267372	24267373	.	+	.	Parent=Os04t0485300-04
Chr04	irgsp1_rep	CDS	24267374	24267544	.	+	0	Parent=Os04t0485300-04
Chr04	irgsp1_rep	three_prime_UTR	24267545	24267728	.	+	.	Parent=Os04t0485300-04
Chr04	irgsp1_rep	mRNA	24269188	24270169	.	-	.	ID=Os04t0485400-01;Name=Os04t0485400-01;Locus_id=Os04g0485400;CGSNL Gene Symbol=ISC44;CGSNL Gene Name=IRON-SULFUR CLUSTER PROTEIN 44;Oryzabase Gene Symbol Synonym(s)=OsISC44;Oryzabase Gene Name Synonym(s)=Iron-sulfur cluster protein 44;Note=Similar to Nucleotide-binding protein.;Transcript_evidence=AK109290 (DDBJ%2C Best hit);ORF_evidence=NP_001149435.1 (RefSeq);NIAS_FLcDNA=002-188-C09;Oryzabase=13446;Expression=AK109290;TENOR=Os04t0485400-01;KEGG=Os04t0485400-01
Chr04	irgsp1_rep	five_prime_UTR	24270104	24270169	.	-	.	Parent=Os04t0485400-01
Chr04	irgsp1_rep	CDS	24270061	24270103	.	-	0	Parent=Os04t0485400-01
Chr04	irgsp1_rep	CDS	24269855	24269956	.	-	2	Parent=Os04t0485400-01
Chr04	irgsp1_rep	CDS	24269725	24269771	.	-	2	Parent=Os04t0485400-01
Chr04	irgsp1_rep	three_prime_UTR	24269188	24269724	.	-	.	Parent=Os04t0485400-01
Chr04	irgsp1_rep	mRNA	24267885	24269220	.	-	.	ID=Os04t0485400-02;Name=Os04t0485400-02;Locus_id=Os04g0485400;CGSNL Gene Symbol=ISC44;CGSNL Gene Name=IRON-SULFUR CLUSTER PROTEIN 44;Oryzabase Gene Symbol Synonym(s)=OsISC44;Oryzabase Gene Name Synonym(s)=Iron-sulfur cluster protein 44;Note=Similar to nucleotide-binding protein 1.;Transcript_evidence=AK120649 (DDBJ%2C Best hit);ORF_evidence=NP_001149342.1 (RefSeq);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Mrp%2C conserved site (IPR000808),ATPase-like%2C ParA/MinD (IPR019591);NIAS_FLcDNA=J013156K04;Oryzabase=13446;Expression=AK120649;TENOR=Os04t0485400-02;KEGG=Os04t0485400-02
Chr04	irgsp1_rep	five_prime_UTR	24269204	24269220	.	-	.	Parent=Os04t0485400-02
Chr04	irgsp1_rep	CDS	24268127	24269203	.	-	0	Parent=Os04t0485400-02
Chr04	irgsp1_rep	three_prime_UTR	24267885	24268126	.	-	.	Parent=Os04t0485400-02
Chr04	irgsp1_rep	mRNA	24272538	24273265	.	+	.	ID=Os04t0485500-00;Name=Os04t0485500-00;Locus_id=Os04g0485500;Note=Similar to Mitochondrial GTPase.;Transcript_evidence=EU971900 (DDBJ);ORF_evidence=E5GCK2 (UniProt);TENOR=Os04t0485500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	24272538	24272672	.	+	0	Parent=Os04t0485500-00
Chr04	irgsp1_rep	CDS	24273154	24273261	.	+	0	Parent=Os04t0485500-00
Chr04	irgsp1_rep	three_prime_UTR	24273262	24273265	.	+	.	Parent=Os04t0485500-00
Chr04	irgsp1_rep	mRNA	24272874	24273981	.	-	.	ID=Os04t0485601-00;Name=Os04t0485601-00;Locus_id=Os04g0485601;Note=Hypothetical gene.;Transcript_evidence=CT837564 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os04t0485601-00;KEGG=Os04t0485601-00
Chr04	irgsp1_rep	five_prime_UTR	24273980	24273981	.	-	.	Parent=Os04t0485601-00
Chr04	irgsp1_rep	CDS	24273639	24273979	.	-	0	Parent=Os04t0485601-00
Chr04	irgsp1_rep	CDS	24273238	24273280	.	-	1	Parent=Os04t0485601-00
Chr04	irgsp1_rep	three_prime_UTR	24272874	24273237	.	-	.	Parent=Os04t0485601-00
Chr04	irgsp1_rep	mRNA	24278127	24278399	.	+	.	ID=Os04t0485700-01;Name=Os04t0485700-01;Locus_id=Os04g0485700;Note=Similar to Exonuclease.;Transcript_evidence=AK058766 (DDBJ%2C Best hit);ORF_evidence=B6TZ94 (UniProt);NIAS_FLcDNA=001-001-D09;Expression=AK058766;TENOR=Os04t0485700-01;KEGG=Os04t0485700-01
Chr04	irgsp1_rep	CDS	24278127	24278318	.	+	0	Parent=Os04t0485700-01
Chr04	irgsp1_rep	three_prime_UTR	24278319	24278399	.	+	.	Parent=Os04t0485700-01
Chr04	irgsp1_rep	mRNA	24279601	24283265	.	-	.	ID=Os04t0485800-01;Name=Os04t0485800-01;Locus_id=Os04g0485800;Oryzabase Gene Symbol Synonym(s)=OsFbox225%2C Os_F0540;Oryzabase Gene Name Synonym(s)=F-box protein 225;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK100299 (DDBJ%2C Best hit);ORF_evidence=A2XUU3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Leucine-rich repeat%2C cysteine-containing subtype (IPR006553);NIAS_FLcDNA=J023077K22;Oryzabase=17012;TENOR=Os04t0485800-01
Chr04	irgsp1_rep	five_prime_UTR	24282368	24283265	.	-	.	Parent=Os04t0485800-01
Chr04	irgsp1_rep	CDS	24281486	24282367	.	-	0	Parent=Os04t0485800-01
Chr04	irgsp1_rep	CDS	24280219	24280698	.	-	0	Parent=Os04t0485800-01
Chr04	irgsp1_rep	three_prime_UTR	24279950	24280218	.	-	.	Parent=Os04t0485800-01
Chr04	irgsp1_rep	three_prime_UTR	24279601	24279853	.	-	.	Parent=Os04t0485800-01
Chr04	irgsp1_rep	mRNA	24279601	24283053	.	-	.	ID=Os04t0485800-02;Name=Os04t0485800-02;Locus_id=Os04g0485800;Oryzabase Gene Symbol Synonym(s)=OsFbox225%2C Os_F0540;Oryzabase Gene Name Synonym(s)=F-box protein 225;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK102446 (DDBJ%2C Best hit);ORF_evidence=A2XUU3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Leucine-rich repeat%2C cysteine-containing subtype (IPR006553);NIAS_FLcDNA=J033093N24;Oryzabase=17012;TENOR=Os04t0485800-02
Chr04	irgsp1_rep	five_prime_UTR	24282368	24283053	.	-	.	Parent=Os04t0485800-02
Chr04	irgsp1_rep	CDS	24281486	24282367	.	-	0	Parent=Os04t0485800-02
Chr04	irgsp1_rep	CDS	24280219	24280698	.	-	0	Parent=Os04t0485800-02
Chr04	irgsp1_rep	three_prime_UTR	24279950	24280218	.	-	.	Parent=Os04t0485800-02
Chr04	irgsp1_rep	three_prime_UTR	24279601	24279853	.	-	.	Parent=Os04t0485800-02
Chr04	irgsp1_rep	mRNA	24294058	24295721	.	+	.	ID=Os04t0486300-01;Name=Os04t0486300-01;Locus_id=Os04g0486300;Oryzabase Gene Symbol Synonym(s)=Os_F0726;Note=Protein of unknown function DUF295 family protein.;Transcript_evidence=AK063256 (DDBJ%2C Best hit);ORF_evidence=A2XUU4 (UniProt);NIAS_FLcDNA=001-112-H10;Oryzabase=17493;Expression=AK063256;TENOR=Os04t0486300-01;KEGG=Os04t0486300-01
Chr04	irgsp1_rep	five_prime_UTR	24294058	24294229	.	+	.	Parent=Os04t0486300-01
Chr04	irgsp1_rep	CDS	24294230	24295504	.	+	0	Parent=Os04t0486300-01
Chr04	irgsp1_rep	three_prime_UTR	24295505	24295721	.	+	.	Parent=Os04t0486300-01
Chr04	irgsp1_rep	mRNA	24296430	24300623	.	-	.	ID=Os04t0486350-00;Name=Os04t0486350-00;Locus_id=Os04g0486350;Note=Hypothetical protein.;Transcript_evidence=tplb0027e11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0486350-00
Chr04	irgsp1_rep	five_prime_UTR	24300399	24300623	.	-	.	Parent=Os04t0486350-00
Chr04	irgsp1_rep	five_prime_UTR	24299266	24299526	.	-	.	Parent=Os04t0486350-00
Chr04	irgsp1_rep	five_prime_UTR	24298729	24298810	.	-	.	Parent=Os04t0486350-00
Chr04	irgsp1_rep	five_prime_UTR	24296840	24297136	.	-	.	Parent=Os04t0486350-00
Chr04	irgsp1_rep	CDS	24296480	24296839	.	-	0	Parent=Os04t0486350-00
Chr04	irgsp1_rep	three_prime_UTR	24296430	24296479	.	-	.	Parent=Os04t0486350-00
Chr04	irgsp1_rep	mRNA	24296458	24301208	.	+	.	ID=Os04t0486400-01;Name=Os04t0486400-01;Locus_id=Os04g0486400;CGSNL Gene Symbol=RML1;CGSNL Gene Name=REGULATED BY M. GRISEA AND LIGHT 1;Oryzabase Gene Symbol Synonym(s)=rml1%2C OsRML1%2C OsMSL21%2C MSL21;Oryzabase Gene Name Synonym(s)=rice gene regulated by M. grisea and light 1%2C Myb/SANT-LIKE 21;Note=RML1 protein.;Transcript_evidence=AK103296 (DDBJ%2C Best hit);ORF_evidence=B4Y5K2 (UniProt);GO=Molecular Function: DNA binding (GO:0003677);InterPro=SANT domain%2C DNA binding (IPR001005),MYB-like (IPR017877);NIAS_FLcDNA=J033125B02;Oryzabase=14527;Expression=AK103296;TENOR=Os04t0486400-01;KEGG=Os04t0486400-01
Chr04	irgsp1_rep	five_prime_UTR	24296458	24296552	.	+	.	Parent=Os04t0486400-01
Chr04	irgsp1_rep	CDS	24296553	24297108	.	+	0	Parent=Os04t0486400-01
Chr04	irgsp1_rep	CDS	24298078	24298116	.	+	2	Parent=Os04t0486400-01
Chr04	irgsp1_rep	CDS	24298693	24298821	.	+	2	Parent=Os04t0486400-01
Chr04	irgsp1_rep	CDS	24299279	24299506	.	+	2	Parent=Os04t0486400-01
Chr04	irgsp1_rep	CDS	24300384	24300589	.	+	2	Parent=Os04t0486400-01
Chr04	irgsp1_rep	three_prime_UTR	24300590	24301208	.	+	.	Parent=Os04t0486400-01
Chr04	irgsp1_rep	mRNA	24301505	24303104	.	-	.	ID=Os04t0486500-01;Name=Os04t0486500-01;Locus_id=Os04g0486500;Oryzabase Gene Symbol Synonym(s)=MAD2%2C OsMAD2;Oryzabase Gene Name Synonym(s)=cell expansion-related gene MAD2;Note=Similar to Mitotic spindle checkpoint protein MAD2.;Transcript_evidence=AK111976 (DDBJ%2C Best hit);ORF_evidence=NP_001105618.1 (RefSeq);GO=Biological Process: mitosis (GO:0007067);InterPro=DNA-binding HORMA (IPR003511);NIAS_FLcDNA=001-007-B02;Oryzabase=19088;Expression=AK111976;TENOR=Os04t0486500-01;KEGG=Os04t0486500-01
Chr04	irgsp1_rep	five_prime_UTR	24302979	24303104	.	-	.	Parent=Os04t0486500-01
Chr04	irgsp1_rep	CDS	24302906	24302978	.	-	0	Parent=Os04t0486500-01
Chr04	irgsp1_rep	CDS	24302779	24302794	.	-	2	Parent=Os04t0486500-01
Chr04	irgsp1_rep	CDS	24302488	24302618	.	-	1	Parent=Os04t0486500-01
Chr04	irgsp1_rep	CDS	24302145	24302369	.	-	2	Parent=Os04t0486500-01
Chr04	irgsp1_rep	CDS	24301894	24302015	.	-	2	Parent=Os04t0486500-01
Chr04	irgsp1_rep	CDS	24301748	24301804	.	-	0	Parent=Os04t0486500-01
Chr04	irgsp1_rep	three_prime_UTR	24301505	24301747	.	-	.	Parent=Os04t0486500-01
Chr04	irgsp1_rep	mRNA	24305454	24309055	.	+	.	ID=Os04t0486600-01;Name=Os04t0486600-01;Locus_id=Os04g0486600;Oryzabase Gene Symbol Synonym(s)=GAPDH%2C OsGAPDH%2C OsGapC2;Oryzabase Gene Name Synonym(s)=Glyceraldehyde-3-phosphate dehydrogenase%2C cytosolic GAPDH2%2C cytosolic glyceraldehyde-3-phosphate dehydrogenase 2;Note=Similar to Glyceraldehyde-3-phosphate dehydrogenase%2C cytosolic 3 (EC 1.2.1.12).;Transcript_evidence=AK064960 (DDBJ%2C Best hit);ORF_evidence=E5G6F3 (UniProt);GO=Biological Process: glucose metabolic process (GO:0006006),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620),Molecular Function: NADP binding (GO:0050661),Molecular Function: NAD binding (GO:0051287);InterPro=Glyceraldehyde-3-phosphate dehydrogenase%2C type I (IPR006424),NAD(P)-binding domain (IPR016040),Glyceraldehyde 3-phosphate dehydrogenase%2C NAD(P) binding domain (IPR020828),Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain (IPR020829),Glyceraldehyde 3-phosphate dehydrogenase%2C active site (IPR020830),Glyceraldehyde/Erythrose phosphate dehydrogenase family (IPR020831);NIAS_FLcDNA=J013001A14;Oryzabase=15530;Expression=AK064960;TENOR=Os04t0486600-01;KEGG=Os04t0486600-01 (EC:1.2.1.12)
Chr04	irgsp1_rep	five_prime_UTR	24305454	24305535	.	+	.	Parent=Os04t0486600-01
Chr04	irgsp1_rep	CDS	24305536	24305539	.	+	0	Parent=Os04t0486600-01
Chr04	irgsp1_rep	CDS	24305669	24305692	.	+	2	Parent=Os04t0486600-01
Chr04	irgsp1_rep	CDS	24305786	24305886	.	+	2	Parent=Os04t0486600-01
Chr04	irgsp1_rep	CDS	24306430	24306545	.	+	0	Parent=Os04t0486600-01
Chr04	irgsp1_rep	CDS	24306632	24306731	.	+	1	Parent=Os04t0486600-01
Chr04	irgsp1_rep	CDS	24306831	24306977	.	+	0	Parent=Os04t0486600-01
Chr04	irgsp1_rep	CDS	24307092	24307152	.	+	0	Parent=Os04t0486600-01
Chr04	irgsp1_rep	CDS	24307243	24307340	.	+	2	Parent=Os04t0486600-01
Chr04	irgsp1_rep	CDS	24307881	24308023	.	+	0	Parent=Os04t0486600-01
Chr04	irgsp1_rep	CDS	24308137	24308220	.	+	1	Parent=Os04t0486600-01
Chr04	irgsp1_rep	CDS	24308301	24308390	.	+	1	Parent=Os04t0486600-01
Chr04	irgsp1_rep	CDS	24308781	24308826	.	+	1	Parent=Os04t0486600-01
Chr04	irgsp1_rep	three_prime_UTR	24308827	24309055	.	+	.	Parent=Os04t0486600-01
Chr04	irgsp1_rep	mRNA	24306697	24309058	.	+	.	ID=Os04t0486600-02;Name=Os04t0486600-02;Locus_id=Os04g0486600;Oryzabase Gene Symbol Synonym(s)=GAPDH%2C OsGAPDH%2C OsGapC2;Oryzabase Gene Name Synonym(s)=Glyceraldehyde-3-phosphate dehydrogenase%2C cytosolic GAPDH2%2C cytosolic glyceraldehyde-3-phosphate dehydrogenase 2;Note=Similar to Glyceralde-3-phosphate dehydrogenase.;Transcript_evidence=AK062122 (DDBJ%2C Best hit);ORF_evidence=A6MZB2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620);InterPro=NAD(P)-binding domain (IPR016040),Glyceraldehyde 3-phosphate dehydrogenase%2C NAD(P) binding domain (IPR020828),Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain (IPR020829),Glyceraldehyde 3-phosphate dehydrogenase%2C active site (IPR020830),Glyceraldehyde/Erythrose phosphate dehydrogenase family (IPR020831);NIAS_FLcDNA=001-045-D02;Oryzabase=15530;Expression=AK062122;TENOR=Os04t0486600-02;KEGG=Os04t0486600-02 (EC:1.2.1.12)
Chr04	irgsp1_rep	five_prime_UTR	24306697	24306698	.	+	.	Parent=Os04t0486600-02
Chr04	irgsp1_rep	CDS	24306699	24306731	.	+	0	Parent=Os04t0486600-02
Chr04	irgsp1_rep	CDS	24306831	24306977	.	+	0	Parent=Os04t0486600-02
Chr04	irgsp1_rep	CDS	24307092	24307152	.	+	0	Parent=Os04t0486600-02
Chr04	irgsp1_rep	CDS	24307243	24307340	.	+	2	Parent=Os04t0486600-02
Chr04	irgsp1_rep	CDS	24307881	24308023	.	+	0	Parent=Os04t0486600-02
Chr04	irgsp1_rep	CDS	24308137	24308220	.	+	1	Parent=Os04t0486600-02
Chr04	irgsp1_rep	CDS	24308301	24308390	.	+	1	Parent=Os04t0486600-02
Chr04	irgsp1_rep	CDS	24308781	24308826	.	+	1	Parent=Os04t0486600-02
Chr04	irgsp1_rep	three_prime_UTR	24308827	24309058	.	+	.	Parent=Os04t0486600-02
Chr04	irgsp1_rep	mRNA	24312618	24319681	.	+	.	ID=Os04t0486800-01;Name=Os04t0486800-01;Locus_id=Os04g0486800;Oryzabase Gene Symbol Synonym(s)=OsDBH;Oryzabase Gene Name Synonym(s)=DEAD-Box Helicase;Note=Similar to predicted protein.;Transcript_evidence=AK288315 (DDBJ%2C Best hit);ORF_evidence=Q0WVW7 (UniProt);GO=Biological Process: DNA recombination (GO:0006310),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=Helicase%2C C-terminal (IPR001650),DNA helicase%2C ATP-dependent%2C RecQ type (IPR004589),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J090021E04;Oryzabase=11598;TENOR=Os04t0486800-01;KEGG=Os04t0486800-01 (EC:3.6.1.-)
Chr04	irgsp1_rep	five_prime_UTR	24312618	24312716	.	+	.	Parent=Os04t0486800-01
Chr04	irgsp1_rep	CDS	24312717	24313670	.	+	0	Parent=Os04t0486800-01
Chr04	irgsp1_rep	CDS	24313743	24313862	.	+	0	Parent=Os04t0486800-01
Chr04	irgsp1_rep	CDS	24313945	24313998	.	+	0	Parent=Os04t0486800-01
Chr04	irgsp1_rep	CDS	24314230	24314342	.	+	0	Parent=Os04t0486800-01
Chr04	irgsp1_rep	CDS	24314562	24314774	.	+	1	Parent=Os04t0486800-01
Chr04	irgsp1_rep	CDS	24314886	24314964	.	+	1	Parent=Os04t0486800-01
Chr04	irgsp1_rep	CDS	24315086	24315139	.	+	0	Parent=Os04t0486800-01
Chr04	irgsp1_rep	CDS	24315211	24315285	.	+	0	Parent=Os04t0486800-01
Chr04	irgsp1_rep	CDS	24315388	24315441	.	+	0	Parent=Os04t0486800-01
Chr04	irgsp1_rep	CDS	24315610	24315749	.	+	0	Parent=Os04t0486800-01
Chr04	irgsp1_rep	CDS	24315830	24315956	.	+	1	Parent=Os04t0486800-01
Chr04	irgsp1_rep	CDS	24316606	24316704	.	+	0	Parent=Os04t0486800-01
Chr04	irgsp1_rep	CDS	24316949	24317004	.	+	0	Parent=Os04t0486800-01
Chr04	irgsp1_rep	CDS	24317094	24317196	.	+	1	Parent=Os04t0486800-01
Chr04	irgsp1_rep	CDS	24318052	24318180	.	+	0	Parent=Os04t0486800-01
Chr04	irgsp1_rep	CDS	24318420	24318598	.	+	0	Parent=Os04t0486800-01
Chr04	irgsp1_rep	CDS	24318716	24318740	.	+	1	Parent=Os04t0486800-01
Chr04	irgsp1_rep	CDS	24318823	24318938	.	+	0	Parent=Os04t0486800-01
Chr04	irgsp1_rep	CDS	24319015	24319105	.	+	1	Parent=Os04t0486800-01
Chr04	irgsp1_rep	three_prime_UTR	24319106	24319209	.	+	.	Parent=Os04t0486800-01
Chr04	irgsp1_rep	three_prime_UTR	24319324	24319681	.	+	.	Parent=Os04t0486800-01
Chr04	irgsp1_rep	mRNA	24321375	24325557	.	+	.	ID=Os04t0486900-01;Name=Os04t0486900-01;Locus_id=Os04g0486900;Note=Acid phosphatase/vanadium-dependent haloperoxidase related family protein.;Transcript_evidence=AK109531 (DDBJ%2C Best hit);ORF_evidence=NP_001146954.1 (RefSeq);InterPro=Acid phosphatase/vanadium-dependent haloperoxidase-related (IPR003832);NIAS_FLcDNA=002-118-C03;Expression=AK109531;TENOR=Os04t0486900-01;KEGG=Os04t0486900-01
Chr04	irgsp1_rep	five_prime_UTR	24321375	24321550	.	+	.	Parent=Os04t0486900-01
Chr04	irgsp1_rep	CDS	24321551	24321642	.	+	0	Parent=Os04t0486900-01
Chr04	irgsp1_rep	CDS	24323322	24323478	.	+	1	Parent=Os04t0486900-01
Chr04	irgsp1_rep	CDS	24323992	24324042	.	+	0	Parent=Os04t0486900-01
Chr04	irgsp1_rep	CDS	24324633	24324725	.	+	0	Parent=Os04t0486900-01
Chr04	irgsp1_rep	CDS	24325206	24325274	.	+	0	Parent=Os04t0486900-01
Chr04	irgsp1_rep	three_prime_UTR	24325275	24325557	.	+	.	Parent=Os04t0486900-01
Chr04	irgsp1_rep	mRNA	24325769	24328250	.	-	.	ID=Os04t0486950-01;Name=Os04t0486950-01;Locus_id=Os04g0486950;CGSNL Gene Symbol=MS;CGSNL Gene Name=MALATE SYNTHASE;Oryzabase Gene Symbol Synonym(s)=MLS%2C OsMLS%2C OsMS;Oryzabase Gene Name Synonym(s)=malate synthase;Note=Similar to Malate synthase.;Transcript_evidence=AK241214 (DDBJ%2C Best hit);ORF_evidence=A2XUV1 (UniProt);GO=Biological Process: glyoxylate cycle (GO:0006097),Molecular Function: catalytic activity (GO:0003824),Molecular Function: malate synthase activity (GO:0004474);InterPro=Malate synthase (IPR001465),Malate synthase A (IPR006252),Malate synthase-like (IPR011076),Malate synthase%2C conserved site (IPR019830);NIAS_FLcDNA=J065122P06;Oryzabase=21590;TENOR=Os04t0486950-01;KEGG=Os04t0486950-01 (EC:2.3.3.9)
Chr04	irgsp1_rep	five_prime_UTR	24328177	24328250	.	-	.	Parent=Os04t0486950-01
Chr04	irgsp1_rep	CDS	24327802	24328176	.	-	0	Parent=Os04t0486950-01
Chr04	irgsp1_rep	CDS	24327392	24327717	.	-	0	Parent=Os04t0486950-01
Chr04	irgsp1_rep	CDS	24326798	24327128	.	-	1	Parent=Os04t0486950-01
Chr04	irgsp1_rep	CDS	24326037	24326708	.	-	0	Parent=Os04t0486950-01
Chr04	irgsp1_rep	three_prime_UTR	24325769	24326036	.	-	.	Parent=Os04t0486950-01
Chr04	irgsp1_rep	mRNA	24331929	24334820	.	-	.	ID=Os04t0487000-01;Name=Os04t0487000-01;Locus_id=Os04g0487000;Note=Conserved hypothetical protein.;Transcript_evidence=AK119408 (DDBJ%2C Best hit);ORF_evidence=Q7XUG0 (UniProt);NIAS_FLcDNA=001-132-F03;Expression=AK119408;TENOR=Os04t0487000-01;KEGG=Os04t0487000-01
Chr04	irgsp1_rep	five_prime_UTR	24334644	24334820	.	-	.	Parent=Os04t0487000-01
Chr04	irgsp1_rep	CDS	24334386	24334643	.	-	0	Parent=Os04t0487000-01
Chr04	irgsp1_rep	three_prime_UTR	24334384	24334385	.	-	.	Parent=Os04t0487000-01
Chr04	irgsp1_rep	three_prime_UTR	24334251	24334287	.	-	.	Parent=Os04t0487000-01
Chr04	irgsp1_rep	three_prime_UTR	24334036	24334121	.	-	.	Parent=Os04t0487000-01
Chr04	irgsp1_rep	three_prime_UTR	24331929	24333902	.	-	.	Parent=Os04t0487000-01
Chr04	irgsp1_rep	mRNA	24333380	24334783	.	-	.	ID=Os04t0487000-02;Name=Os04t0487000-02;Locus_id=Os04g0487000;Note=Conserved hypothetical protein.;Transcript_evidence=AK111312 (DDBJ%2C Best hit);ORF_evidence=Q7XUG0 (UniProt);NIAS_FLcDNA=002-181-C04;Expression=AK111312;TENOR=Os04t0487000-02;KEGG=Os04t0487000-02
Chr04	irgsp1_rep	five_prime_UTR	24334644	24334783	.	-	.	Parent=Os04t0487000-02
Chr04	irgsp1_rep	CDS	24334386	24334643	.	-	0	Parent=Os04t0487000-02
Chr04	irgsp1_rep	three_prime_UTR	24334384	24334385	.	-	.	Parent=Os04t0487000-02
Chr04	irgsp1_rep	three_prime_UTR	24334251	24334287	.	-	.	Parent=Os04t0487000-02
Chr04	irgsp1_rep	three_prime_UTR	24334036	24334121	.	-	.	Parent=Os04t0487000-02
Chr04	irgsp1_rep	three_prime_UTR	24333380	24333902	.	-	.	Parent=Os04t0487000-02
Chr04	irgsp1_rep	mRNA	24339609	24343781	.	+	.	ID=Os04t0487100-01;Name=Os04t0487100-01;Locus_id=Os04g0487100;Note=Galactose oxidase/kelch%2C beta-propeller domain containing protein.;Transcript_evidence=AK106016 (DDBJ%2C Best hit);ORF_evidence=Q25A88 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Kelch repeat type 1 (IPR006652),Kelch-type beta propeller (IPR015915);NIAS_FLcDNA=001-206-B07;Expression=AK106016;TENOR=Os04t0487100-01;KEGG=Os04t0487100-01
Chr04	irgsp1_rep	five_prime_UTR	24339609	24339702	.	+	.	Parent=Os04t0487100-01
Chr04	irgsp1_rep	CDS	24339703	24339906	.	+	0	Parent=Os04t0487100-01
Chr04	irgsp1_rep	CDS	24340837	24341016	.	+	0	Parent=Os04t0487100-01
Chr04	irgsp1_rep	CDS	24341564	24341793	.	+	0	Parent=Os04t0487100-01
Chr04	irgsp1_rep	CDS	24341968	24342138	.	+	1	Parent=Os04t0487100-01
Chr04	irgsp1_rep	CDS	24342448	24342553	.	+	1	Parent=Os04t0487100-01
Chr04	irgsp1_rep	CDS	24342862	24343068	.	+	0	Parent=Os04t0487100-01
Chr04	irgsp1_rep	CDS	24343409	24343573	.	+	0	Parent=Os04t0487100-01
Chr04	irgsp1_rep	three_prime_UTR	24343574	24343781	.	+	.	Parent=Os04t0487100-01
Chr04	irgsp1_rep	mRNA	24348107	24350845	.	+	.	ID=Os04t0487200-01;Name=Os04t0487200-01;Locus_id=Os04g0487200;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK102330 (DDBJ%2C Best hit);ORF_evidence=C0LGE9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033090M14;Expression=AK102330;TENOR=Os04t0487200-01;KEGG=Os04t0487200-01
Chr04	irgsp1_rep	five_prime_UTR	24348107	24348137	.	+	.	Parent=Os04t0487200-01
Chr04	irgsp1_rep	CDS	24348138	24350006	.	+	0	Parent=Os04t0487200-01
Chr04	irgsp1_rep	three_prime_UTR	24350007	24350845	.	+	.	Parent=Os04t0487200-01
Chr04	irgsp1_rep	mRNA	24352461	24355355	.	-	.	ID=Os04t0487300-01;Name=Os04t0487300-01;Locus_id=Os04g0487300;Note=Similar to DNA-directed RNA polymerases II 24 kDa polypeptide.;Transcript_evidence=AK100492 (DDBJ%2C Best hit);ORF_evidence=B3TLL2 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899);InterPro=RNA polymerase%2C subunit H/Rpb5 C-terminal (IPR000783),RNA polymerase%2C Rpb5%2C N-terminal (IPR005571),DNA-directed RNA polymerase%2C RPB5 subunit (IPR014381);NIAS_FLcDNA=J023098I05;TENOR=Os04t0487300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	24355274	24355355	.	-	.	Parent=Os04t0487300-01
Chr04	irgsp1_rep	CDS	24355076	24355273	.	-	0	Parent=Os04t0487300-01
Chr04	irgsp1_rep	CDS	24354760	24354939	.	-	0	Parent=Os04t0487300-01
Chr04	irgsp1_rep	CDS	24354531	24354656	.	-	0	Parent=Os04t0487300-01
Chr04	irgsp1_rep	three_prime_UTR	24352461	24354530	.	-	.	Parent=Os04t0487300-01
Chr04	irgsp1_rep	mRNA	24356759	24357616	.	-	.	ID=Os04t0487400-00;Name=Os04t0487400-00;Locus_id=Os04g0487400;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=EU974167 (DDBJ);ORF_evidence=Q7XSB3 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);TENOR=Os04t0487400-00
Chr04	irgsp1_rep	CDS	24356759	24357616	.	-	0	Parent=Os04t0487400-00
Chr04	irgsp1_rep	mRNA	24359394	24360538	.	+	.	ID=Os04t0487550-00;Name=Os04t0487550-00;Locus_id=Os04g0487550;CGSNL Gene Symbol=C3H29;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29;Oryzabase Gene Symbol Synonym(s)=OsC3H29%2C OsCCCH-Zn-9;Oryzabase Gene Name Synonym(s)=Putative zinc finger CCCH domain-containing protein 29;Note=Putative zinc finger CCCH domain-containing protein 29.;Transcript_evidence=Q7XSB2 (UniProt);ORF_evidence=Q7XSB2 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);Oryzabase=8593;TENOR=Os04t0487550-00
Chr04	irgsp1_rep	CDS	24359394	24359603	.	+	0	Parent=Os04t0487550-00
Chr04	irgsp1_rep	CDS	24360308	24360538	.	+	0	Parent=Os04t0487550-00
Chr04	irgsp1_rep	mRNA	24371795	24376970	.	+	.	ID=Os04t0488000-01;Name=Os04t0488000-01;Locus_id=Os04g0488000;CGSNL Gene Symbol=CDKG%3B2;CGSNL Gene Name=CYCLIN-DEPENDENT KINASE G%3B2;Oryzabase Gene Symbol Synonym(s)=CDKG%3B2%2C Orysa%3BCDKG%3B2;Note=Similar to PITSLRE serine/threonine-protein kinase CDC2L1 (EC 2.7.1.37) (Galactosyltransferase associated protein kinase p58/GTA) (Cell division cycle 2-like protein kinase 1).;Transcript_evidence=AK111619 (DDBJ%2C Best hit);ORF_evidence=Q7XUF4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013108P20;Oryzabase=13299;Expression=AK111619;TENOR=Os04t0488000-01;KEGG=Os04t0488000-01 (EC:2.7.1.37%2C EC:2.7.11.22)
Chr04	irgsp1_rep	five_prime_UTR	24371795	24372126	.	+	.	Parent=Os04t0488000-01
Chr04	irgsp1_rep	CDS	24372127	24373589	.	+	0	Parent=Os04t0488000-01
Chr04	irgsp1_rep	CDS	24373683	24373811	.	+	1	Parent=Os04t0488000-01
Chr04	irgsp1_rep	CDS	24373921	24374056	.	+	1	Parent=Os04t0488000-01
Chr04	irgsp1_rep	CDS	24374210	24374298	.	+	0	Parent=Os04t0488000-01
Chr04	irgsp1_rep	CDS	24374394	24374505	.	+	1	Parent=Os04t0488000-01
Chr04	irgsp1_rep	CDS	24374599	24374705	.	+	0	Parent=Os04t0488000-01
Chr04	irgsp1_rep	CDS	24374796	24374892	.	+	1	Parent=Os04t0488000-01
Chr04	irgsp1_rep	three_prime_UTR	24374893	24374973	.	+	.	Parent=Os04t0488000-01
Chr04	irgsp1_rep	three_prime_UTR	24375046	24375420	.	+	.	Parent=Os04t0488000-01
Chr04	irgsp1_rep	three_prime_UTR	24376620	24376970	.	+	.	Parent=Os04t0488000-01
Chr04	irgsp1_rep	mRNA	24371839	24376875	.	+	.	ID=Os04t0488000-02;Name=Os04t0488000-02;Locus_id=Os04g0488000;CGSNL Gene Symbol=CDKG%3B2;CGSNL Gene Name=CYCLIN-DEPENDENT KINASE G%3B2;Oryzabase Gene Symbol Synonym(s)=CDKG%3B2%2C Orysa%3BCDKG%3B2;Note=Similar to PITSLRE serine/threonine-protein kinase CDC2L1 (EC 2.7.1.37) (Galactosyltransferase associated protein kinase p58/GTA) (Cell division cycle 2-like protein kinase 1).;Transcript_evidence=AK099095 (DDBJ%2C Best hit);ORF_evidence=B7F3Y9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023021D11;Oryzabase=13299;Expression=AK099095;TENOR=Os04t0488000-02;KEGG=Os04t0488000-02 (EC:2.7.1.37%2C EC:2.7.11.22)
Chr04	irgsp1_rep	five_prime_UTR	24371839	24372126	.	+	.	Parent=Os04t0488000-02
Chr04	irgsp1_rep	CDS	24372127	24373589	.	+	0	Parent=Os04t0488000-02
Chr04	irgsp1_rep	CDS	24373683	24373811	.	+	1	Parent=Os04t0488000-02
Chr04	irgsp1_rep	CDS	24373921	24374056	.	+	1	Parent=Os04t0488000-02
Chr04	irgsp1_rep	CDS	24374210	24374298	.	+	0	Parent=Os04t0488000-02
Chr04	irgsp1_rep	CDS	24374394	24374505	.	+	1	Parent=Os04t0488000-02
Chr04	irgsp1_rep	CDS	24374599	24374705	.	+	0	Parent=Os04t0488000-02
Chr04	irgsp1_rep	CDS	24374796	24374892	.	+	1	Parent=Os04t0488000-02
Chr04	irgsp1_rep	three_prime_UTR	24374893	24374973	.	+	.	Parent=Os04t0488000-02
Chr04	irgsp1_rep	three_prime_UTR	24375046	24375420	.	+	.	Parent=Os04t0488000-02
Chr04	irgsp1_rep	three_prime_UTR	24376620	24376875	.	+	.	Parent=Os04t0488000-02
Chr04	irgsp1_rep	mRNA	24375320	24377651	.	+	.	ID=Os04t0488000-03;Name=Os04t0488000-03;Locus_id=Os04g0488000;CGSNL Gene Symbol=CDKG%3B2;CGSNL Gene Name=CYCLIN-DEPENDENT KINASE G%3B2;Oryzabase Gene Symbol Synonym(s)=CDKG%3B2%2C Orysa%3BCDKG%3B2;Note=Hypothetical gene.;Transcript_evidence=AK120634 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013153J02;Oryzabase=13299;Expression=AK120634;TENOR=Os04t0488000-03;KEGG=Os04t0488000-03
Chr04	irgsp1_rep	five_prime_UTR	24375320	24377276	.	+	.	Parent=Os04t0488000-03
Chr04	irgsp1_rep	CDS	24377277	24377579	.	+	0	Parent=Os04t0488000-03
Chr04	irgsp1_rep	three_prime_UTR	24377580	24377651	.	+	.	Parent=Os04t0488000-03
Chr04	irgsp1_rep	mRNA	24372272	24373801	.	-	.	ID=Os04t0488050-00;Name=Os04t0488050-00;Locus_id=Os04g0488050;Note=Hypothetical gene.;Transcript_evidence=BT085088 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0488050-00;KEGG=Os04t0488050-00
Chr04	irgsp1_rep	five_prime_UTR	24373680	24373801	.	-	.	Parent=Os04t0488050-00
Chr04	irgsp1_rep	five_prime_UTR	24372987	24373581	.	-	.	Parent=Os04t0488050-00
Chr04	irgsp1_rep	CDS	24372672	24372986	.	-	0	Parent=Os04t0488050-00
Chr04	irgsp1_rep	three_prime_UTR	24372272	24372671	.	-	.	Parent=Os04t0488050-00
Chr04	irgsp1_rep	mRNA	24379793	24386400	.	+	.	ID=Os04t0488100-01;Name=Os04t0488100-01;Locus_id=Os04g0488100;RAP-DB Gene Symbol Synonym(s)=OsRad21-2;RAP-DB Gene Name Synonym(s)=Rad21-2 protein;CGSNL Gene Symbol=RAD21-2;CGSNL Gene Name=RAD21-2 PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsRad21-2;Oryzabase Gene Name Synonym(s)=Rad21-2 protein;Note=A member of the Rad21/Rec8 family%2C Regulation of cell division and growth;Transcript_evidence=AK073406;ORF_evidence=Q7XUF3;GO=Molecular Function: protein binding (GO:0005515);InterPro=ScpA-like%2C C-terminal (IPR023093),Winged helix DNA-binding domain superfamily (IPR036390),Rad21/Rec8-like protein%2C N-terminal (IPR006910),Rad21/Rec8-like protein%2C C-terminal%2C eukaryotic (IPR006909);NIAS_FLcDNA=J033043K15;Manual Curation=September 25%2C 2020;Literature_PMID=21205177;Oryzabase=6884;Expression=AK073406;TENOR=Os04t0488100-01;KEGG=Os04t0488100-01
Chr04	irgsp1_rep	five_prime_UTR	24379793	24380037	.	+	.	Parent=Os04t0488100-01
Chr04	irgsp1_rep	CDS	24380038	24380164	.	+	0	Parent=Os04t0488100-01
Chr04	irgsp1_rep	CDS	24380961	24381381	.	+	2	Parent=Os04t0488100-01
Chr04	irgsp1_rep	CDS	24381468	24381508	.	+	1	Parent=Os04t0488100-01
Chr04	irgsp1_rep	CDS	24381584	24381630	.	+	2	Parent=Os04t0488100-01
Chr04	irgsp1_rep	CDS	24382806	24382870	.	+	0	Parent=Os04t0488100-01
Chr04	irgsp1_rep	CDS	24382949	24383071	.	+	1	Parent=Os04t0488100-01
Chr04	irgsp1_rep	CDS	24383160	24383297	.	+	1	Parent=Os04t0488100-01
Chr04	irgsp1_rep	CDS	24383421	24383662	.	+	1	Parent=Os04t0488100-01
Chr04	irgsp1_rep	CDS	24383751	24383937	.	+	2	Parent=Os04t0488100-01
Chr04	irgsp1_rep	CDS	24384509	24384645	.	+	1	Parent=Os04t0488100-01
Chr04	irgsp1_rep	CDS	24384727	24385139	.	+	2	Parent=Os04t0488100-01
Chr04	irgsp1_rep	CDS	24385277	24385313	.	+	0	Parent=Os04t0488100-01
Chr04	irgsp1_rep	CDS	24385406	24385430	.	+	2	Parent=Os04t0488100-01
Chr04	irgsp1_rep	CDS	24385518	24385650	.	+	1	Parent=Os04t0488100-01
Chr04	irgsp1_rep	CDS	24386004	24386117	.	+	0	Parent=Os04t0488100-01
Chr04	irgsp1_rep	three_prime_UTR	24386118	24386400	.	+	.	Parent=Os04t0488100-01
Chr04	irgsp1_rep	mRNA	24389666	24390928	.	+	.	ID=Os04t0488200-00;Name=Os04t0488200-00;Locus_id=Os04g0488200;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001053149.1 (RefSeq);InterPro=Pentatricopeptide repeat (IPR002885);TENOR=Os04t0488200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	24389666	24390928	.	+	0	Parent=Os04t0488200-00
Chr04	irgsp1_rep	mRNA	24391455	24396904	.	+	.	ID=Os04t0488300-01;Name=Os04t0488300-01;Locus_id=Os04g0488300;Note=Hypothetical protein.;Transcript_evidence=AK106643 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-113-E08;Expression=AK106643;TENOR=Os04t0488300-01;KEGG=Os04t0488300-01
Chr04	irgsp1_rep	five_prime_UTR	24391455	24392119	.	+	.	Parent=Os04t0488300-01
Chr04	irgsp1_rep	five_prime_UTR	24392947	24393150	.	+	.	Parent=Os04t0488300-01
Chr04	irgsp1_rep	five_prime_UTR	24393263	24393577	.	+	.	Parent=Os04t0488300-01
Chr04	irgsp1_rep	five_prime_UTR	24395152	24395461	.	+	.	Parent=Os04t0488300-01
Chr04	irgsp1_rep	five_prime_UTR	24395674	24395983	.	+	.	Parent=Os04t0488300-01
Chr04	irgsp1_rep	CDS	24395984	24396271	.	+	0	Parent=Os04t0488300-01
Chr04	irgsp1_rep	three_prime_UTR	24396272	24396904	.	+	.	Parent=Os04t0488300-01
Chr04	irgsp1_rep	mRNA	24391459	24395755	.	-	.	ID=Os04t0488400-01;Name=Os04t0488400-01;Locus_id=Os04g0488400;CGSNL Gene Symbol=FTL6;CGSNL Gene Name=FLOWERING TIME LIKE GENE 6;Oryzabase Gene Symbol Synonym(s)=FT-L 6%2C OsFTL6%2C FT-L6;Oryzabase Gene Name Synonym(s)=FT-like gene 6;Note=Similar to FLOWERING LOCUS T protein.;Transcript_evidence=AK068736 (DDBJ%2C Best hit);ORF_evidence=NP_001106256.1 (RefSeq);InterPro=Phosphatidylethanolamine-binding%2C conserved site (IPR001858),Phosphatidylethanolamine-binding protein PEBP (IPR008914);NIAS_FLcDNA=J013159E08;Oryzabase=11228;Expression=AK068736;TENOR=Os04t0488400-01;KEGG=Os04t0488400-01
Chr04	irgsp1_rep	five_prime_UTR	24393475	24395755	.	-	.	Parent=Os04t0488400-01
Chr04	irgsp1_rep	CDS	24393283	24393474	.	-	0	Parent=Os04t0488400-01
Chr04	irgsp1_rep	CDS	24392500	24392561	.	-	0	Parent=Os04t0488400-01
Chr04	irgsp1_rep	CDS	24392343	24392383	.	-	1	Parent=Os04t0488400-01
Chr04	irgsp1_rep	CDS	24391629	24391858	.	-	2	Parent=Os04t0488400-01
Chr04	irgsp1_rep	three_prime_UTR	24391459	24391628	.	-	.	Parent=Os04t0488400-01
Chr04	irgsp1_rep	mRNA	24398522	24402508	.	-	.	ID=Os04t0488500-01;Name=Os04t0488500-01;Locus_id=Os04g0488500;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK069116 (DDBJ%2C Best hit);ORF_evidence=B9FFU5 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J023009C24;Expression=AK069116;TENOR=Os04t0488500-01;KEGG=Os04t0488500-01
Chr04	irgsp1_rep	five_prime_UTR	24402462	24402508	.	-	.	Parent=Os04t0488500-01
Chr04	irgsp1_rep	CDS	24402369	24402461	.	-	0	Parent=Os04t0488500-01
Chr04	irgsp1_rep	CDS	24399591	24401861	.	-	0	Parent=Os04t0488500-01
Chr04	irgsp1_rep	CDS	24398944	24398985	.	-	0	Parent=Os04t0488500-01
Chr04	irgsp1_rep	three_prime_UTR	24398742	24398943	.	-	.	Parent=Os04t0488500-01
Chr04	irgsp1_rep	three_prime_UTR	24398522	24398633	.	-	.	Parent=Os04t0488500-01
Chr04	irgsp1_rep	mRNA	24402666	24404739	.	+	.	ID=Os04t0488600-01;Name=Os04t0488600-01;Locus_id=Os04g0488600;Note=Uncharacterised protein family Ycf20 domain containing protein.;Transcript_evidence=AK073488 (DDBJ%2C Best hit);ORF_evidence=A3AV32 (UniProt);InterPro=Uncharacterised protein family Ycf20 (IPR007572);NIAS_FLcDNA=J033040L19;TENOR=Os04t0488600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	24402666	24402844	.	+	.	Parent=Os04t0488600-01
Chr04	irgsp1_rep	CDS	24402845	24402882	.	+	0	Parent=Os04t0488600-01
Chr04	irgsp1_rep	CDS	24403875	24404358	.	+	1	Parent=Os04t0488600-01
Chr04	irgsp1_rep	three_prime_UTR	24404359	24404739	.	+	.	Parent=Os04t0488600-01
Chr04	irgsp1_rep	mRNA	24402691	24404692	.	+	.	ID=Os04t0488600-02;Name=Os04t0488600-02;Locus_id=Os04g0488600;Note=Uncharacterised protein family Ycf20 domain containing protein.;Transcript_evidence=AK104248 (DDBJ%2C Best hit);ORF_evidence=A3AV32 (UniProt);InterPro=Uncharacterised protein family Ycf20 (IPR007572);NIAS_FLcDNA=006-308-F10;TENOR=Os04t0488600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	24402691	24402844	.	+	.	Parent=Os04t0488600-02
Chr04	irgsp1_rep	CDS	24402845	24402882	.	+	0	Parent=Os04t0488600-02
Chr04	irgsp1_rep	CDS	24403875	24404358	.	+	1	Parent=Os04t0488600-02
Chr04	irgsp1_rep	three_prime_UTR	24404359	24404692	.	+	.	Parent=Os04t0488600-02
Chr04	irgsp1_rep	mRNA	24404008	24404692	.	+	.	ID=Os04t0488600-03;Name=Os04t0488600-03;Locus_id=Os04g0488600;Note=Similar to predicted protein.;Transcript_evidence=AK058955 (DDBJ%2C Best hit);ORF_evidence=A3AV32 (UniProt);InterPro=Uncharacterised protein family Ycf20 (IPR007572);NIAS_FLcDNA=001-020-B02;Expression=AK058955;TENOR=Os04t0488600-03;KEGG=Os04t0488600-03
Chr04	irgsp1_rep	CDS	24404008	24404358	.	+	0	Parent=Os04t0488600-03
Chr04	irgsp1_rep	three_prime_UTR	24404359	24404692	.	+	.	Parent=Os04t0488600-03
Chr04	irgsp1_rep	mRNA	24404248	24405049	.	+	.	ID=Os04t0488600-04;Name=Os04t0488600-04;Locus_id=Os04g0488600;Note=Similar to predicted protein.;Transcript_evidence=AK060198 (DDBJ%2C Best hit);ORF_evidence=Q1XDS2 (UniProt);InterPro=Uncharacterised protein family Ycf20 (IPR007572);NIAS_FLcDNA=001-001-F09;Expression=AK060198;TENOR=Os04t0488600-04;KEGG=Os04t0488600-04
Chr04	irgsp1_rep	CDS	24404248	24404358	.	+	0	Parent=Os04t0488600-04
Chr04	irgsp1_rep	three_prime_UTR	24404359	24405049	.	+	.	Parent=Os04t0488600-04
Chr04	irgsp1_rep	mRNA	24405413	24406465	.	+	.	ID=Os04t0488650-01;Name=Os04t0488650-01;Locus_id=Os04g0488650;RAP-DB Gene Symbol Synonym(s)=miR162b;Note=Primary microRNA of miR162b%3B Target gene(s): OsTRE1 (Os10g0521000)%2C Resistance to drought stress;Transcript_evidence=AK241748;ORF_evidence=NONE;NIAS_FLcDNA=J065202G18;Manual Curation=November 7%2C 2018;Literature_PMID=26233894;TENOR=Os04t0488650-01
Chr04	irgsp1_rep	exon	24405413	24406465	.	+	.	Parent=Os04t0488650-01
Chr04	irgsp1_rep	mRNA	24416321	24418415	.	-	.	ID=Os04t0488700-01;Name=Os04t0488700-01;Locus_id=Os04g0488700;RAP-DB Gene Symbol Synonym(s)=OsOxi1;RAP-DB Gene Name Synonym(s)=oxidative signal inducible 1;Oryzabase Gene Symbol Synonym(s)=OsOxi1;Oryzabase Gene Name Synonym(s)=AGC Kinase OsOxi1%2C oxidative signal inducible 1;Note=AGC kinase%2C Positive regulation of disease resistance;Transcript_evidence=AK067266;ORF_evidence=Q7XUE9;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),Protein kinase domain (IPR000719),AGC-kinase%2C C-terminal (IPR000961),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J013098C22;Manual Curation=November 5%2C 2020;Literature_PMID=21051443,20739304;Oryzabase=18114;Expression=AK067266;TENOR=Os04t0488700-01;KEGG=Os04t0488700-01 (EC:2.7.11.1)
Chr04	irgsp1_rep	five_prime_UTR	24418308	24418415	.	-	.	Parent=Os04t0488700-01
Chr04	irgsp1_rep	CDS	24417898	24418307	.	-	0	Parent=Os04t0488700-01
Chr04	irgsp1_rep	CDS	24416806	24417784	.	-	1	Parent=Os04t0488700-01
Chr04	irgsp1_rep	three_prime_UTR	24416321	24416805	.	-	.	Parent=Os04t0488700-01
Chr04	irgsp1_rep	mRNA	24416492	24418067	.	-	.	ID=Os04t0488700-02;Name=Os04t0488700-02;Locus_id=Os04g0488700;Oryzabase Gene Symbol Synonym(s)=OsOxi1;Oryzabase Gene Name Synonym(s)=AGC Kinase OsOxi1%2C oxidative signal inducible 1;Note=Similar to protein kinase KIPK.;Transcript_evidence=AK073224 (DDBJ%2C Best hit);ORF_evidence=NP_001148148.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),AGC-kinase%2C C-terminal (IPR000961),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033023C18;Oryzabase=18114;TENOR=Os04t0488700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	24418050	24418067	.	-	.	Parent=Os04t0488700-02
Chr04	irgsp1_rep	CDS	24417898	24418049	.	-	0	Parent=Os04t0488700-02
Chr04	irgsp1_rep	CDS	24416806	24417784	.	-	1	Parent=Os04t0488700-02
Chr04	irgsp1_rep	three_prime_UTR	24416492	24416805	.	-	.	Parent=Os04t0488700-02
Chr04	irgsp1_rep	mRNA	24416800	24417809	.	+	.	ID=Os04t0488800-00;Name=Os04t0488800-00;Locus_id=Os04g0488800;Note=Conserved hypothetical protein.;Transcript_evidence=EU943630 (DDBJ);ORF_evidence=NP_001168751.1 (RefSeq);TENOR=Os04t0488800-00
Chr04	irgsp1_rep	CDS	24416800	24417417	.	+	0	Parent=Os04t0488800-00
Chr04	irgsp1_rep	three_prime_UTR	24417418	24417809	.	+	.	Parent=Os04t0488800-00
Chr04	irgsp1_rep	mRNA	24431489	24440479	.	-	.	ID=Os04t0489100-01;Name=Os04t0489100-01;Locus_id=Os04g0489100;Oryzabase Gene Symbol Synonym(s)=OsSTA126;Note=Lipase%2C class 3 family protein.;Transcript_evidence=AK120849 (DDBJ%2C Best hit);ORF_evidence=Q7XUE7 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921);NIAS_FLcDNA=J023023F02;Oryzabase=19415;Expression=AK120849;TENOR=Os04t0489100-01;KEGG=Os04t0489100-01
Chr04	irgsp1_rep	five_prime_UTR	24440348	24440479	.	-	.	Parent=Os04t0489100-01
Chr04	irgsp1_rep	CDS	24439991	24440347	.	-	0	Parent=Os04t0489100-01
Chr04	irgsp1_rep	CDS	24438936	24439074	.	-	0	Parent=Os04t0489100-01
Chr04	irgsp1_rep	CDS	24438393	24438612	.	-	2	Parent=Os04t0489100-01
Chr04	irgsp1_rep	CDS	24438207	24438307	.	-	1	Parent=Os04t0489100-01
Chr04	irgsp1_rep	CDS	24437262	24437383	.	-	2	Parent=Os04t0489100-01
Chr04	irgsp1_rep	CDS	24437091	24437182	.	-	0	Parent=Os04t0489100-01
Chr04	irgsp1_rep	CDS	24436739	24436844	.	-	1	Parent=Os04t0489100-01
Chr04	irgsp1_rep	CDS	24435854	24436008	.	-	0	Parent=Os04t0489100-01
Chr04	irgsp1_rep	CDS	24434816	24434937	.	-	1	Parent=Os04t0489100-01
Chr04	irgsp1_rep	CDS	24434486	24434616	.	-	2	Parent=Os04t0489100-01
Chr04	irgsp1_rep	CDS	24433941	24434038	.	-	0	Parent=Os04t0489100-01
Chr04	irgsp1_rep	CDS	24433602	24433820	.	-	1	Parent=Os04t0489100-01
Chr04	irgsp1_rep	CDS	24433029	24433451	.	-	1	Parent=Os04t0489100-01
Chr04	irgsp1_rep	CDS	24432142	24432223	.	-	1	Parent=Os04t0489100-01
Chr04	irgsp1_rep	three_prime_UTR	24431489	24432141	.	-	.	Parent=Os04t0489100-01
Chr04	irgsp1_rep	mRNA	24444513	24444845	.	-	.	ID=Os04t0489200-00;Name=Os04t0489200-00;Locus_id=Os04g0489200;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001053156.2 (RefSeq);TENOR=Os04t0489200-00
Chr04	irgsp1_rep	CDS	24444513	24444845	.	-	0	Parent=Os04t0489200-00
Chr04	irgsp1_rep	mRNA	24461146	24463043	.	+	.	ID=Os04t0489600-01;Name=Os04t0489600-01;Locus_id=Os04g0489600;Oryzabase Gene Symbol Synonym(s)=OsbHLH111;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 111;Note=Hypothetical conserved gene.;Transcript_evidence=AK062301 (DDBJ%2C Best hit);ORF_evidence=B9FFV0 (UniProt);NIAS_FLcDNA=001-100-H05;Oryzabase=15392;Expression=AK062301;TENOR=Os04t0489600-01;KEGG=Os04t0489600-01
Chr04	irgsp1_rep	five_prime_UTR	24461146	24461371	.	+	.	Parent=Os04t0489600-01
Chr04	irgsp1_rep	CDS	24461372	24461884	.	+	0	Parent=Os04t0489600-01
Chr04	irgsp1_rep	three_prime_UTR	24461885	24463043	.	+	.	Parent=Os04t0489600-01
Chr04	irgsp1_rep	mRNA	24461187	24468929	.	+	.	ID=Os04t0489600-02;Name=Os04t0489600-02;Locus_id=Os04g0489600;Oryzabase Gene Symbol Synonym(s)=OsbHLH111;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 111;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=AK068039 (DDBJ%2C Best hit);ORF_evidence=Q8SA73 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J013131B20;Oryzabase=15392;Expression=AK068039;TENOR=Os04t0489600-02;KEGG=Os04t0489600-02
Chr04	irgsp1_rep	five_prime_UTR	24461187	24461371	.	+	.	Parent=Os04t0489600-02
Chr04	irgsp1_rep	CDS	24461372	24461765	.	+	0	Parent=Os04t0489600-02
Chr04	irgsp1_rep	CDS	24466451	24466836	.	+	2	Parent=Os04t0489600-02
Chr04	irgsp1_rep	CDS	24466968	24467090	.	+	0	Parent=Os04t0489600-02
Chr04	irgsp1_rep	CDS	24467710	24467775	.	+	0	Parent=Os04t0489600-02
Chr04	irgsp1_rep	CDS	24467918	24467986	.	+	0	Parent=Os04t0489600-02
Chr04	irgsp1_rep	CDS	24468397	24468468	.	+	0	Parent=Os04t0489600-02
Chr04	irgsp1_rep	three_prime_UTR	24468469	24468929	.	+	.	Parent=Os04t0489600-02
Chr04	irgsp1_rep	mRNA	24471709	24479383	.	+	.	ID=Os04t0489800-01;Name=Os04t0489800-01;Locus_id=Os04g0489800;Oryzabase Gene Symbol Synonym(s)=OsPUB27;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 27%2C U-box protein 27;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK100423 (DDBJ%2C Best hit);ORF_evidence=B8AVU7 (UniProt);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),U box domain (IPR003613),Armadillo-like helical (IPR011989),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023088B15;Oryzabase=17819;Expression=AK100423;TENOR=Os04t0489800-01;KEGG=Os04t0489800-01
Chr04	irgsp1_rep	five_prime_UTR	24471709	24471826	.	+	.	Parent=Os04t0489800-01
Chr04	irgsp1_rep	five_prime_UTR	24475273	24475325	.	+	.	Parent=Os04t0489800-01
Chr04	irgsp1_rep	five_prime_UTR	24475658	24475685	.	+	.	Parent=Os04t0489800-01
Chr04	irgsp1_rep	CDS	24475686	24475736	.	+	0	Parent=Os04t0489800-01
Chr04	irgsp1_rep	CDS	24476244	24476429	.	+	0	Parent=Os04t0489800-01
Chr04	irgsp1_rep	CDS	24476640	24476747	.	+	0	Parent=Os04t0489800-01
Chr04	irgsp1_rep	CDS	24476959	24478181	.	+	0	Parent=Os04t0489800-01
Chr04	irgsp1_rep	CDS	24478334	24479168	.	+	1	Parent=Os04t0489800-01
Chr04	irgsp1_rep	three_prime_UTR	24479169	24479383	.	+	.	Parent=Os04t0489800-01
Chr04	irgsp1_rep	mRNA	24472449	24473815	.	-	.	ID=Os04t0489900-01;Name=Os04t0489900-01;Locus_id=Os04g0489900;Note=Conserved hypothetical protein.;Transcript_evidence=AK069310 (DDBJ%2C Best hit);ORF_evidence=NP_001173985.1 (RefSeq);NIAS_FLcDNA=J023012K12;TENOR=Os04t0489900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	24472804	24473815	.	-	.	Parent=Os04t0489900-01
Chr04	irgsp1_rep	CDS	24472705	24472803	.	-	0	Parent=Os04t0489900-01
Chr04	irgsp1_rep	three_prime_UTR	24472449	24472704	.	-	.	Parent=Os04t0489900-01
Chr04	irgsp1_rep	mRNA	24476242	24477278	.	-	.	ID=Os04t0489950-00;Name=Os04t0489950-00;Locus_id=Os04g0489950;Note=Non-protein coding transcript.;Transcript_evidence=BT084794 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0489950-00
Chr04	irgsp1_rep	exon	24476938	24477278	.	-	.	Parent=Os04t0489950-00
Chr04	irgsp1_rep	exon	24476631	24476723	.	-	.	Parent=Os04t0489950-00
Chr04	irgsp1_rep	exon	24476242	24476425	.	-	.	Parent=Os04t0489950-00
Chr04	irgsp1_rep	mRNA	24480825	24481725	.	+	.	ID=Os04t0490000-01;Name=Os04t0490000-01;Locus_id=Os04g0490000;Note=Similar to Glutamate synthase [NADH]%2C chloroplast precursor (EC 1.4.1.14) (NADH- GOGAT).;Transcript_evidence=AK108365 (DDBJ%2C Best hit);ORF_evidence=NP_001105004.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Amine oxidase (IPR002937);NIAS_FLcDNA=002-142-D02;Expression=AK108365;TENOR=Os04t0490000-01;KEGG=Os04t0490000-01 (EC:1.4.1.14)
Chr04	irgsp1_rep	five_prime_UTR	24480825	24480830	.	+	.	Parent=Os04t0490000-01
Chr04	irgsp1_rep	CDS	24480831	24481024	.	+	0	Parent=Os04t0490000-01
Chr04	irgsp1_rep	CDS	24481148	24481460	.	+	1	Parent=Os04t0490000-01
Chr04	irgsp1_rep	three_prime_UTR	24481461	24481725	.	+	.	Parent=Os04t0490000-01
Chr04	irgsp1_rep	mRNA	24483127	24488727	.	+	.	ID=Os04t0490100-00;Name=Os04t0490100-00;Locus_id=Os04g0490100;Note=Similar to protoporphyrinogen IX oxidase (mitochondrial)2.;Transcript_evidence=EU947242 (DDBJ);ORF_evidence=NP_001105004.1 (RefSeq);GO=Biological Process: porphyrin-containing compound biosynthetic process (GO:0006779),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxygen-dependent protoporphyrinogen oxidase activity (GO:0004729),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Amine oxidase (IPR002937),Protoporphyrinogen oxidase (IPR004572);TENOR=Os04t0490100-00
Chr04	irgsp1_rep	CDS	24483127	24483213	.	+	0	Parent=Os04t0490100-00
Chr04	irgsp1_rep	CDS	24483507	24483547	.	+	0	Parent=Os04t0490100-00
Chr04	irgsp1_rep	CDS	24484813	24484945	.	+	1	Parent=Os04t0490100-00
Chr04	irgsp1_rep	CDS	24485620	24485808	.	+	0	Parent=Os04t0490100-00
Chr04	irgsp1_rep	CDS	24485908	24485982	.	+	0	Parent=Os04t0490100-00
Chr04	irgsp1_rep	CDS	24486991	24487117	.	+	0	Parent=Os04t0490100-00
Chr04	irgsp1_rep	CDS	24487726	24487834	.	+	2	Parent=Os04t0490100-00
Chr04	irgsp1_rep	CDS	24487918	24487992	.	+	1	Parent=Os04t0490100-00
Chr04	irgsp1_rep	CDS	24488148	24488258	.	+	1	Parent=Os04t0490100-00
Chr04	irgsp1_rep	CDS	24488511	24488517	.	+	1	Parent=Os04t0490100-00
Chr04	irgsp1_rep	three_prime_UTR	24488518	24488727	.	+	.	Parent=Os04t0490100-00
Chr04	irgsp1_rep	mRNA	24504726	24505397	.	+	.	ID=Os04t0490300-01;Name=Os04t0490300-01;Locus_id=Os04g0490300;Note=Similar to protein binding protein.;Transcript_evidence=AK242909 (DDBJ%2C Best hit);ORF_evidence=NP_001148108.1 (RefSeq);NIAS_FLcDNA=J090082P18;TENOR=Os04t0490300-01;KEGG=Os04t0490300-01
Chr04	irgsp1_rep	CDS	24504726	24505106	.	+	0	Parent=Os04t0490300-01
Chr04	irgsp1_rep	three_prime_UTR	24505107	24505397	.	+	.	Parent=Os04t0490300-01
Chr04	irgsp1_rep	mRNA	24505544	24508396	.	-	.	ID=Os04t0490400-01;Name=Os04t0490400-01;Locus_id=Os04g0490400;Note=Ribosome recycling factor family protein.;Transcript_evidence=AK072486 (DDBJ%2C Best hit);ORF_evidence=NP_186829.3 (RefSeq);GO=Biological Process: translation (GO:0006412);InterPro=Ribosome recycling factor (IPR002661),Ribosome recycling factor domain (IPR023584);NIAS_FLcDNA=J023133F23;Expression=AK072486;TENOR=Os04t0490400-01;KEGG=Os04t0490400-01
Chr04	irgsp1_rep	five_prime_UTR	24508240	24508396	.	-	.	Parent=Os04t0490400-01
Chr04	irgsp1_rep	CDS	24508050	24508239	.	-	0	Parent=Os04t0490400-01
Chr04	irgsp1_rep	CDS	24507662	24507805	.	-	2	Parent=Os04t0490400-01
Chr04	irgsp1_rep	CDS	24507451	24507566	.	-	2	Parent=Os04t0490400-01
Chr04	irgsp1_rep	CDS	24507065	24507156	.	-	0	Parent=Os04t0490400-01
Chr04	irgsp1_rep	CDS	24506686	24506707	.	-	1	Parent=Os04t0490400-01
Chr04	irgsp1_rep	CDS	24506548	24506616	.	-	0	Parent=Os04t0490400-01
Chr04	irgsp1_rep	CDS	24505948	24506016	.	-	0	Parent=Os04t0490400-01
Chr04	irgsp1_rep	CDS	24505792	24505872	.	-	0	Parent=Os04t0490400-01
Chr04	irgsp1_rep	three_prime_UTR	24505544	24505791	.	-	.	Parent=Os04t0490400-01
Chr04	irgsp1_rep	mRNA	24512543	24515493	.	+	.	ID=Os04t0490500-01;Name=Os04t0490500-01;Locus_id=Os04g0490500;CGSNL Gene Symbol=RLCK152;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 152;Oryzabase Gene Symbol Synonym(s)=OsRLCK152;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 152;Note=Protein kinase-like domain domain containing protein.;Transcript_evidence=AK065576 (DDBJ%2C Best hit);ORF_evidence=Q7X6Q8 (UniProt);GO=Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J013028F13;Oryzabase=18855;TENOR=Os04t0490500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	24512543	24512631	.	+	.	Parent=Os04t0490500-01
Chr04	irgsp1_rep	CDS	24512632	24512752	.	+	0	Parent=Os04t0490500-01
Chr04	irgsp1_rep	CDS	24513089	24513414	.	+	2	Parent=Os04t0490500-01
Chr04	irgsp1_rep	three_prime_UTR	24513415	24513519	.	+	.	Parent=Os04t0490500-01
Chr04	irgsp1_rep	three_prime_UTR	24513642	24513921	.	+	.	Parent=Os04t0490500-01
Chr04	irgsp1_rep	three_prime_UTR	24514063	24514195	.	+	.	Parent=Os04t0490500-01
Chr04	irgsp1_rep	three_prime_UTR	24514727	24514813	.	+	.	Parent=Os04t0490500-01
Chr04	irgsp1_rep	three_prime_UTR	24514935	24515493	.	+	.	Parent=Os04t0490500-01
Chr04	irgsp1_rep	mRNA	24515450	24521611	.	-	.	ID=Os04t0490600-01;Name=Os04t0490600-01;Locus_id=Os04g0490600;Note=Nucleotide-sugar transporter family protein.;Transcript_evidence=AK063469 (DDBJ%2C Best hit);ORF_evidence=Q9LX35 (UniProt);GO=Biological Process: carbohydrate transport (GO:0008643),Cellular Component: Golgi membrane (GO:0000139),Cellular Component: integral to membrane (GO:0016021),Molecular Function: sugar:hydrogen symporter activity (GO:0005351);InterPro=Nucleotide-sugar transporter (IPR007271);NIAS_FLcDNA=001-116-A03;Expression=AK063469;TENOR=Os04t0490600-01;KEGG=Os04t0490600-01
Chr04	irgsp1_rep	five_prime_UTR	24521291	24521611	.	-	.	Parent=Os04t0490600-01
Chr04	irgsp1_rep	five_prime_UTR	24520790	24520882	.	-	.	Parent=Os04t0490600-01
Chr04	irgsp1_rep	CDS	24520619	24520789	.	-	0	Parent=Os04t0490600-01
Chr04	irgsp1_rep	CDS	24520386	24520502	.	-	0	Parent=Os04t0490600-01
Chr04	irgsp1_rep	CDS	24520061	24520117	.	-	0	Parent=Os04t0490600-01
Chr04	irgsp1_rep	CDS	24519699	24519776	.	-	0	Parent=Os04t0490600-01
Chr04	irgsp1_rep	CDS	24519187	24519231	.	-	0	Parent=Os04t0490600-01
Chr04	irgsp1_rep	CDS	24519001	24519060	.	-	0	Parent=Os04t0490600-01
Chr04	irgsp1_rep	CDS	24518355	24518477	.	-	0	Parent=Os04t0490600-01
Chr04	irgsp1_rep	CDS	24518162	24518239	.	-	0	Parent=Os04t0490600-01
Chr04	irgsp1_rep	CDS	24517908	24517977	.	-	0	Parent=Os04t0490600-01
Chr04	irgsp1_rep	CDS	24517234	24517304	.	-	2	Parent=Os04t0490600-01
Chr04	irgsp1_rep	CDS	24517092	24517103	.	-	0	Parent=Os04t0490600-01
Chr04	irgsp1_rep	three_prime_UTR	24516970	24517091	.	-	.	Parent=Os04t0490600-01
Chr04	irgsp1_rep	three_prime_UTR	24516806	24516882	.	-	.	Parent=Os04t0490600-01
Chr04	irgsp1_rep	three_prime_UTR	24516638	24516686	.	-	.	Parent=Os04t0490600-01
Chr04	irgsp1_rep	three_prime_UTR	24516486	24516549	.	-	.	Parent=Os04t0490600-01
Chr04	irgsp1_rep	three_prime_UTR	24515450	24515766	.	-	.	Parent=Os04t0490600-01
Chr04	irgsp1_rep	mRNA	24525205	24527659	.	+	.	ID=Os04t0490700-01;Name=Os04t0490700-01;Locus_id=Os04g0490700;Note=Similar to OSIGBa0130B08.2 protein.;Transcript_evidence=AK072099 (DDBJ%2C Best hit);ORF_evidence=Q01IU8 (UniProt);NIAS_FLcDNA=J013119G18;Expression=AK072099;TENOR=Os04t0490700-01;KEGG=Os04t0490700-01
Chr04	irgsp1_rep	five_prime_UTR	24525205	24525427	.	+	.	Parent=Os04t0490700-01
Chr04	irgsp1_rep	CDS	24525428	24527410	.	+	0	Parent=Os04t0490700-01
Chr04	irgsp1_rep	three_prime_UTR	24527411	24527659	.	+	.	Parent=Os04t0490700-01
Chr04	irgsp1_rep	mRNA	24527988	24530505	.	-	.	ID=Os04t0490800-01;Name=Os04t0490800-01;Locus_id=Os04g0490800;Oryzabase Gene Symbol Synonym(s)=Os4NPP1%2C 4NPP1;Oryzabase Gene Name Synonym(s)=4-nitrophenylphosphatase 1;Note=Haloacid dehalogenase-like hydrolase domain containing protein.;Transcript_evidence=AK066522 (DDBJ%2C Best hit),AK104854 (DDBJ%2C Best hit);ORF_evidence=Q01IU7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: phosphatase activity (GO:0016791);InterPro=2-phosphoglycolate phosphatase%2C eukaryotic (IPR006349),HAD-superfamily hydrolase%2C subfamily IIA (IPR006357),HAD-like domain (IPR023214),Nitrophenylphosphatase-like  domain (IPR023215);NIAS_FLcDNA=J013072G15,001-043-B10;Oryzabase=19248;TENOR=Os04t0490800-01
Chr04	irgsp1_rep	five_prime_UTR	24530422	24530505	.	-	.	Parent=Os04t0490800-01
Chr04	irgsp1_rep	CDS	24530151	24530421	.	-	0	Parent=Os04t0490800-01
Chr04	irgsp1_rep	CDS	24530003	24530070	.	-	2	Parent=Os04t0490800-01
Chr04	irgsp1_rep	CDS	24529808	24529900	.	-	0	Parent=Os04t0490800-01
Chr04	irgsp1_rep	CDS	24529645	24529716	.	-	0	Parent=Os04t0490800-01
Chr04	irgsp1_rep	CDS	24529431	24529502	.	-	0	Parent=Os04t0490800-01
Chr04	irgsp1_rep	CDS	24529292	24529351	.	-	0	Parent=Os04t0490800-01
Chr04	irgsp1_rep	CDS	24529166	24529218	.	-	0	Parent=Os04t0490800-01
Chr04	irgsp1_rep	CDS	24528772	24528869	.	-	1	Parent=Os04t0490800-01
Chr04	irgsp1_rep	CDS	24528591	24528690	.	-	2	Parent=Os04t0490800-01
Chr04	irgsp1_rep	CDS	24528375	24528478	.	-	1	Parent=Os04t0490800-01
Chr04	irgsp1_rep	CDS	24528180	24528286	.	-	2	Parent=Os04t0490800-01
Chr04	irgsp1_rep	three_prime_UTR	24527988	24528179	.	-	.	Parent=Os04t0490800-01
Chr04	irgsp1_rep	mRNA	24534521	24536242	.	-	.	ID=Os04t0490866-00;Name=Os04t0490866-00;Locus_id=Os04g0490866;Note=Hypothetical protein.;Transcript_evidence=tplb0036o08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0490866-00
Chr04	irgsp1_rep	CDS	24535589	24536242	.	-	0	Parent=Os04t0490866-00
Chr04	irgsp1_rep	CDS	24535310	24535468	.	-	0	Parent=Os04t0490866-00
Chr04	irgsp1_rep	CDS	24535021	24535231	.	-	0	Parent=Os04t0490866-00
Chr04	irgsp1_rep	CDS	24534879	24534886	.	-	2	Parent=Os04t0490866-00
Chr04	irgsp1_rep	three_prime_UTR	24534521	24534878	.	-	.	Parent=Os04t0490866-00
Chr04	irgsp1_rep	mRNA	24535112	24536254	.	+	.	ID=Os04t0490900-00;Name=Os04t0490900-00;Locus_id=Os04g0490900;CGSNL Gene Symbol=AAP11G;CGSNL Gene Name=AMINO ACID PERMEASE 11G;Oryzabase Gene Symbol Synonym(s)=OsAAP11G%2C OsAAP19%2C AAP19;Oryzabase Gene Name Synonym(s)=amino acid permease 11G%2C amino acid permease 19%2C amino acid/auxin permease 19;Note=Similar to OSIGBa0130B08.4 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01IU6 (UniProt);InterPro=Amino acid transporter%2C transmembrane (IPR013057);Oryzabase=18503;TENOR=Os04t0490900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	24535112	24535253	.	+	0	Parent=Os04t0490900-00
Chr04	irgsp1_rep	CDS	24535302	24535405	.	+	2	Parent=Os04t0490900-00
Chr04	irgsp1_rep	CDS	24535586	24536254	.	+	0	Parent=Os04t0490900-00
Chr04	irgsp1_rep	mRNA	24541955	24545363	.	+	.	ID=Os04t0491100-01;Name=Os04t0491100-01;Locus_id=Os04g0491100;Note=NB-ARC domain containing protein.;Transcript_evidence=AK069045 (DDBJ%2C Best hit);ORF_evidence=Q01IU4 (UniProt);NIAS_FLcDNA=J023010C01;Expression=AK069045;TENOR=Os04t0491100-01;KEGG=Os04t0491100-01
Chr04	irgsp1_rep	five_prime_UTR	24541955	24542156	.	+	.	Parent=Os04t0491100-01
Chr04	irgsp1_rep	five_prime_UTR	24542241	24542324	.	+	.	Parent=Os04t0491100-01
Chr04	irgsp1_rep	CDS	24542325	24545081	.	+	0	Parent=Os04t0491100-01
Chr04	irgsp1_rep	three_prime_UTR	24545082	24545363	.	+	.	Parent=Os04t0491100-01
Chr04	irgsp1_rep	mRNA	24546646	24548878	.	-	.	ID=Os04t0491200-00;Name=Os04t0491200-00;Locus_id=Os04g0491200;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Oligopeptide transporter domain containing protein.;Transcript_evidence=AK248291 (DDBJ);ORF_evidence=NP_001053170.2 (RefSeq);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);Oryzabase=23653;TENOR=Os04t0491200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	24548006	24548878	.	-	0	Parent=Os04t0491200-00
Chr04	irgsp1_rep	CDS	24547764	24547900	.	-	0	Parent=Os04t0491200-00
Chr04	irgsp1_rep	CDS	24546646	24547603	.	-	1	Parent=Os04t0491200-00
Chr04	irgsp1_rep	mRNA	24550891	24559985	.	-	.	ID=Os04t0491350-00;Name=Os04t0491350-00;Locus_id=Os04g0491350;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Similar to OSIGBa0130B08.8 protein.;Transcript_evidence=AK376195 (DDBJ);ORF_evidence=Q01IU2 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);Oryzabase=23654;TENOR=Os04t0491350-00
Chr04	irgsp1_rep	five_prime_UTR	24559927	24559985	.	-	.	Parent=Os04t0491350-00
Chr04	irgsp1_rep	CDS	24559882	24559926	.	-	0	Parent=Os04t0491350-00
Chr04	irgsp1_rep	CDS	24552526	24552966	.	-	0	Parent=Os04t0491350-00
Chr04	irgsp1_rep	CDS	24551979	24552103	.	-	0	Parent=Os04t0491350-00
Chr04	irgsp1_rep	CDS	24550986	24551772	.	-	1	Parent=Os04t0491350-00
Chr04	irgsp1_rep	three_prime_UTR	24550891	24550985	.	-	.	Parent=Os04t0491350-00
Chr04	irgsp1_rep	mRNA	24563623	24566456	.	-	.	ID=Os04t0491500-01;Name=Os04t0491500-01;Locus_id=Os04g0491500;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Similar to OSIGBa0130B08.10 protein.;Transcript_evidence=AK068089 (DDBJ%2C Best hit);ORF_evidence=Q01IU0 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J013132K12;Oryzabase=23655;Expression=AK068089;TENOR=Os04t0491500-01;KEGG=Os04t0491500-01
Chr04	irgsp1_rep	five_prime_UTR	24566158	24566456	.	-	.	Parent=Os04t0491500-01
Chr04	irgsp1_rep	five_prime_UTR	24565491	24566057	.	-	.	Parent=Os04t0491500-01
Chr04	irgsp1_rep	CDS	24565403	24565490	.	-	0	Parent=Os04t0491500-01
Chr04	irgsp1_rep	CDS	24565053	24565270	.	-	2	Parent=Os04t0491500-01
Chr04	irgsp1_rep	CDS	24563788	24564246	.	-	0	Parent=Os04t0491500-01
Chr04	irgsp1_rep	three_prime_UTR	24563623	24563787	.	-	.	Parent=Os04t0491500-01
Chr04	irgsp1_rep	mRNA	24560986	24566454	.	-	.	ID=Os04t0491500-02;Name=Os04t0491500-02;Locus_id=Os04g0491500;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=TGF-beta receptor%2C type I/II extracellular region family protein.;Transcript_evidence=AK101116 (DDBJ%2C Best hit);ORF_evidence=Q01IU0 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J033025G24;Oryzabase=23655;Expression=AK101116;TENOR=Os04t0491500-02;KEGG=Os04t0491500-02
Chr04	irgsp1_rep	five_prime_UTR	24566158	24566454	.	-	.	Parent=Os04t0491500-02
Chr04	irgsp1_rep	five_prime_UTR	24565491	24566057	.	-	.	Parent=Os04t0491500-02
Chr04	irgsp1_rep	CDS	24565403	24565490	.	-	0	Parent=Os04t0491500-02
Chr04	irgsp1_rep	CDS	24565053	24565270	.	-	2	Parent=Os04t0491500-02
Chr04	irgsp1_rep	CDS	24563806	24564246	.	-	0	Parent=Os04t0491500-02
Chr04	irgsp1_rep	CDS	24562211	24562329	.	-	0	Parent=Os04t0491500-02
Chr04	irgsp1_rep	CDS	24561278	24562085	.	-	1	Parent=Os04t0491500-02
Chr04	irgsp1_rep	three_prime_UTR	24560986	24561277	.	-	.	Parent=Os04t0491500-02
Chr04	irgsp1_rep	mRNA	24567146	24571583	.	-	.	ID=Os04t0491700-01;Name=Os04t0491700-01;Locus_id=Os04g0491700;Note=Sugar/inositol transporter domain containing protein.;Transcript_evidence=AK069132 (DDBJ%2C Best hit);ORF_evidence=Q01IT9 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J023007N05;Expression=AK069132;TENOR=Os04t0491700-01;KEGG=Os04t0491700-01
Chr04	irgsp1_rep	five_prime_UTR	24571015	24571583	.	-	.	Parent=Os04t0491700-01
Chr04	irgsp1_rep	CDS	24570867	24571014	.	-	0	Parent=Os04t0491700-01
Chr04	irgsp1_rep	CDS	24570278	24570348	.	-	2	Parent=Os04t0491700-01
Chr04	irgsp1_rep	CDS	24569863	24570198	.	-	0	Parent=Os04t0491700-01
Chr04	irgsp1_rep	CDS	24568753	24568860	.	-	0	Parent=Os04t0491700-01
Chr04	irgsp1_rep	CDS	24568487	24568672	.	-	0	Parent=Os04t0491700-01
Chr04	irgsp1_rep	CDS	24567631	24568302	.	-	0	Parent=Os04t0491700-01
Chr04	irgsp1_rep	three_prime_UTR	24567146	24567630	.	-	.	Parent=Os04t0491700-01
Chr04	irgsp1_rep	mRNA	24567746	24568882	.	+	.	ID=Os04t0491901-00;Name=Os04t0491901-00;Locus_id=Os04g0491901;Note=Non-protein coding transcript.;Transcript_evidence=EU940776 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0491901-00
Chr04	irgsp1_rep	exon	24567746	24568882	.	+	.	Parent=Os04t0491901-00
Chr04	irgsp1_rep	mRNA	24584943	24588712	.	+	.	ID=Os04t0492100-01;Name=Os04t0492100-01;Locus_id=Os04g0492100;Note=Similar to H0425E08.1 protein.;Transcript_evidence=AK060196 (DDBJ%2C Best hit);ORF_evidence=Q01IA7 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RanBP2-type (IPR001876),Zinc finger%2C CCHC-type (IPR001878),Zinc finger%2C C6HC-type (IPR002867),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=001-001-F04;TENOR=Os04t0492100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	24584943	24584984	.	+	0	Parent=Os04t0492100-01
Chr04	irgsp1_rep	CDS	24585318	24585408	.	+	0	Parent=Os04t0492100-01
Chr04	irgsp1_rep	CDS	24585499	24585671	.	+	2	Parent=Os04t0492100-01
Chr04	irgsp1_rep	CDS	24586009	24586113	.	+	0	Parent=Os04t0492100-01
Chr04	irgsp1_rep	CDS	24586186	24586274	.	+	0	Parent=Os04t0492100-01
Chr04	irgsp1_rep	CDS	24586559	24586666	.	+	1	Parent=Os04t0492100-01
Chr04	irgsp1_rep	CDS	24586753	24586843	.	+	1	Parent=Os04t0492100-01
Chr04	irgsp1_rep	CDS	24586933	24587022	.	+	0	Parent=Os04t0492100-01
Chr04	irgsp1_rep	CDS	24587150	24587197	.	+	0	Parent=Os04t0492100-01
Chr04	irgsp1_rep	CDS	24587367	24587438	.	+	0	Parent=Os04t0492100-01
Chr04	irgsp1_rep	CDS	24587520	24587619	.	+	0	Parent=Os04t0492100-01
Chr04	irgsp1_rep	CDS	24587703	24587829	.	+	2	Parent=Os04t0492100-01
Chr04	irgsp1_rep	CDS	24588011	24588293	.	+	1	Parent=Os04t0492100-01
Chr04	irgsp1_rep	three_prime_UTR	24588294	24588712	.	+	.	Parent=Os04t0492100-01
Chr04	irgsp1_rep	mRNA	24593234	24604107	.	+	.	ID=Os04t0492300-01;Name=Os04t0492300-01;Locus_id=Os04g0492300;Note=Similar to DNA-directed RNA polymerase II largest chain.;Transcript_evidence=AK120935 (DDBJ%2C Best hit);ORF_evidence=Q01IA5 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: ribonucleoside binding (GO:0032549);InterPro=RNA polymerase%2C alpha subunit (IPR000722),RNA polymerase%2C N-terminal (IPR006592),RNA polymerase Rpb1%2C domain 3 (IPR007066),RNA polymerase Rpb1%2C domain 1 (IPR007080),RNA polymerase Rpb1%2C domain 5 (IPR007081),RNA polymerase Rpb1%2C domain 4 (IPR007083),DNA-directed RNA polymerase III largest subunit (IPR015700);NIAS_FLcDNA=J023036N03;Expression=AK120935;TENOR=Os04t0492300-01;KEGG=Os04t0492300-01 (EC:2.7.7.6)
Chr04	irgsp1_rep	five_prime_UTR	24593234	24593595	.	+	.	Parent=Os04t0492300-01
Chr04	irgsp1_rep	CDS	24593596	24593666	.	+	0	Parent=Os04t0492300-01
Chr04	irgsp1_rep	CDS	24593781	24593910	.	+	1	Parent=Os04t0492300-01
Chr04	irgsp1_rep	CDS	24594072	24594221	.	+	0	Parent=Os04t0492300-01
Chr04	irgsp1_rep	CDS	24594308	24594463	.	+	0	Parent=Os04t0492300-01
Chr04	irgsp1_rep	CDS	24594609	24594791	.	+	0	Parent=Os04t0492300-01
Chr04	irgsp1_rep	CDS	24594924	24595036	.	+	0	Parent=Os04t0492300-01
Chr04	irgsp1_rep	CDS	24595133	24595232	.	+	1	Parent=Os04t0492300-01
Chr04	irgsp1_rep	CDS	24595887	24596087	.	+	0	Parent=Os04t0492300-01
Chr04	irgsp1_rep	CDS	24596163	24596311	.	+	0	Parent=Os04t0492300-01
Chr04	irgsp1_rep	CDS	24596386	24596527	.	+	1	Parent=Os04t0492300-01
Chr04	irgsp1_rep	CDS	24596613	24596753	.	+	0	Parent=Os04t0492300-01
Chr04	irgsp1_rep	CDS	24596860	24597048	.	+	0	Parent=Os04t0492300-01
Chr04	irgsp1_rep	CDS	24597384	24597597	.	+	0	Parent=Os04t0492300-01
Chr04	irgsp1_rep	CDS	24597960	24598053	.	+	2	Parent=Os04t0492300-01
Chr04	irgsp1_rep	CDS	24598433	24598667	.	+	1	Parent=Os04t0492300-01
Chr04	irgsp1_rep	CDS	24599004	24599195	.	+	0	Parent=Os04t0492300-01
Chr04	irgsp1_rep	CDS	24599681	24599779	.	+	0	Parent=Os04t0492300-01
Chr04	irgsp1_rep	CDS	24600471	24600674	.	+	0	Parent=Os04t0492300-01
Chr04	irgsp1_rep	CDS	24600756	24601031	.	+	0	Parent=Os04t0492300-01
Chr04	irgsp1_rep	CDS	24601268	24601415	.	+	0	Parent=Os04t0492300-01
Chr04	irgsp1_rep	CDS	24601707	24601858	.	+	2	Parent=Os04t0492300-01
Chr04	irgsp1_rep	CDS	24602215	24602370	.	+	0	Parent=Os04t0492300-01
Chr04	irgsp1_rep	CDS	24602448	24602564	.	+	0	Parent=Os04t0492300-01
Chr04	irgsp1_rep	CDS	24602640	24602719	.	+	0	Parent=Os04t0492300-01
Chr04	irgsp1_rep	CDS	24602935	24603139	.	+	1	Parent=Os04t0492300-01
Chr04	irgsp1_rep	CDS	24603247	24603449	.	+	0	Parent=Os04t0492300-01
Chr04	irgsp1_rep	CDS	24603644	24603695	.	+	1	Parent=Os04t0492300-01
Chr04	irgsp1_rep	three_prime_UTR	24603696	24604107	.	+	.	Parent=Os04t0492300-01
Chr04	irgsp1_rep	mRNA	24611350	24615113	.	+	.	ID=Os04t0492400-01;Name=Os04t0492400-01;Locus_id=Os04g0492400;Note=Similar to H0425E08.4 protein.;Transcript_evidence=AK072530 (DDBJ%2C Best hit);ORF_evidence=Q01IA4 (UniProt);InterPro=Nicotinamide N-methyltransferase%2C putative (IPR019410);NIAS_FLcDNA=J023128I21;Oryzabase=20204;Expression=AK072530;TENOR=Os04t0492400-01;KEGG=Os04t0492400-01
Chr04	irgsp1_rep	five_prime_UTR	24611350	24611753	.	+	.	Parent=Os04t0492400-01
Chr04	irgsp1_rep	five_prime_UTR	24612931	24612945	.	+	.	Parent=Os04t0492400-01
Chr04	irgsp1_rep	CDS	24612946	24613077	.	+	0	Parent=Os04t0492400-01
Chr04	irgsp1_rep	CDS	24613243	24613305	.	+	0	Parent=Os04t0492400-01
Chr04	irgsp1_rep	CDS	24613436	24613502	.	+	0	Parent=Os04t0492400-01
Chr04	irgsp1_rep	CDS	24613581	24613681	.	+	2	Parent=Os04t0492400-01
Chr04	irgsp1_rep	CDS	24613844	24613888	.	+	0	Parent=Os04t0492400-01
Chr04	irgsp1_rep	CDS	24613998	24614459	.	+	0	Parent=Os04t0492400-01
Chr04	irgsp1_rep	CDS	24614667	24614837	.	+	0	Parent=Os04t0492400-01
Chr04	irgsp1_rep	three_prime_UTR	24614838	24615113	.	+	.	Parent=Os04t0492400-01
Chr04	irgsp1_rep	mRNA	24611415	24615159	.	+	.	ID=Os04t0492400-02;Name=Os04t0492400-02;Locus_id=Os04g0492400;Note=Similar to H0425E08.4 protein.;Transcript_evidence=AK099916 (DDBJ%2C Best hit);ORF_evidence=Q01IA4 (UniProt);InterPro=Nicotinamide N-methyltransferase%2C putative (IPR019410);NIAS_FLcDNA=J013116I01;Oryzabase=20204;Expression=AK099916;TENOR=Os04t0492400-02;KEGG=Os04t0492400-02
Chr04	irgsp1_rep	five_prime_UTR	24611415	24611753	.	+	.	Parent=Os04t0492400-02
Chr04	irgsp1_rep	five_prime_UTR	24612938	24612945	.	+	.	Parent=Os04t0492400-02
Chr04	irgsp1_rep	CDS	24612946	24613077	.	+	0	Parent=Os04t0492400-02
Chr04	irgsp1_rep	CDS	24613243	24613305	.	+	0	Parent=Os04t0492400-02
Chr04	irgsp1_rep	CDS	24613436	24613502	.	+	0	Parent=Os04t0492400-02
Chr04	irgsp1_rep	CDS	24613581	24613681	.	+	2	Parent=Os04t0492400-02
Chr04	irgsp1_rep	CDS	24613844	24613888	.	+	0	Parent=Os04t0492400-02
Chr04	irgsp1_rep	CDS	24613998	24614459	.	+	0	Parent=Os04t0492400-02
Chr04	irgsp1_rep	CDS	24614667	24614837	.	+	0	Parent=Os04t0492400-02
Chr04	irgsp1_rep	three_prime_UTR	24614838	24615159	.	+	.	Parent=Os04t0492400-02
Chr04	irgsp1_rep	mRNA	24613960	24614468	.	-	.	ID=Os04t0492450-00;Name=Os04t0492450-00;Locus_id=Os04g0492450;Note=Non-protein coding transcript.;Transcript_evidence=EU949684 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0492450-00
Chr04	irgsp1_rep	exon	24613960	24614468	.	-	.	Parent=Os04t0492450-00
Chr04	irgsp1_rep	mRNA	24615554	24620092	.	+	.	ID=Os04t0492500-01;Name=Os04t0492500-01;Locus_id=Os04g0492500;Note=RWD domain containing protein.;Transcript_evidence=AK067292 (DDBJ%2C Best hit);ORF_evidence=Q01IA3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=RWD domain (IPR006575),Ubiquitin-conjugating enzyme/RWD-like (IPR016135);NIAS_FLcDNA=J013105J09;Expression=AK067292;TENOR=Os04t0492500-01;KEGG=Os04t0492500-01
Chr04	irgsp1_rep	five_prime_UTR	24615554	24615763	.	+	.	Parent=Os04t0492500-01
Chr04	irgsp1_rep	CDS	24615764	24615885	.	+	0	Parent=Os04t0492500-01
Chr04	irgsp1_rep	CDS	24616782	24616853	.	+	1	Parent=Os04t0492500-01
Chr04	irgsp1_rep	CDS	24616944	24617003	.	+	1	Parent=Os04t0492500-01
Chr04	irgsp1_rep	CDS	24617105	24617210	.	+	1	Parent=Os04t0492500-01
Chr04	irgsp1_rep	CDS	24617900	24618004	.	+	0	Parent=Os04t0492500-01
Chr04	irgsp1_rep	CDS	24618925	24619392	.	+	0	Parent=Os04t0492500-01
Chr04	irgsp1_rep	CDS	24619988	24620092	.	+	0	Parent=Os04t0492500-01
Chr04	irgsp1_rep	mRNA	24624551	24636298	.	+	.	ID=Os04t0492600-01;Name=Os04t0492600-01;Locus_id=Os04g0492600;Note=Anticodon-binding domain containing protein.;Transcript_evidence=AK072226 (DDBJ%2C Best hit);ORF_evidence=Q01IA3 (UniProt);GO=Molecular Function: tRNA binding (GO:0000049),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: ATP binding (GO:0005524);InterPro=Anticodon-binding (IPR004154),Serine/threonine-protein kinase GCN2%2C anticodon binding domain (IPR024435);NIAS_FLcDNA=J013168I08;Expression=AK072226;TENOR=Os04t0492600-01;KEGG=Os04t0492600-01 (EC:6.1.1.21)
Chr04	irgsp1_rep	five_prime_UTR	24624551	24624552	.	+	.	Parent=Os04t0492600-01
Chr04	irgsp1_rep	CDS	24624553	24624617	.	+	0	Parent=Os04t0492600-01
Chr04	irgsp1_rep	CDS	24624739	24624835	.	+	1	Parent=Os04t0492600-01
Chr04	irgsp1_rep	CDS	24631458	24631538	.	+	0	Parent=Os04t0492600-01
Chr04	irgsp1_rep	CDS	24631676	24631732	.	+	0	Parent=Os04t0492600-01
Chr04	irgsp1_rep	CDS	24632026	24632157	.	+	0	Parent=Os04t0492600-01
Chr04	irgsp1_rep	CDS	24632238	24632324	.	+	0	Parent=Os04t0492600-01
Chr04	irgsp1_rep	CDS	24632703	24632811	.	+	0	Parent=Os04t0492600-01
Chr04	irgsp1_rep	CDS	24632896	24633032	.	+	2	Parent=Os04t0492600-01
Chr04	irgsp1_rep	CDS	24633603	24633707	.	+	0	Parent=Os04t0492600-01
Chr04	irgsp1_rep	CDS	24634328	24634416	.	+	0	Parent=Os04t0492600-01
Chr04	irgsp1_rep	CDS	24634519	24634621	.	+	1	Parent=Os04t0492600-01
Chr04	irgsp1_rep	CDS	24634704	24634826	.	+	0	Parent=Os04t0492600-01
Chr04	irgsp1_rep	CDS	24635390	24635500	.	+	0	Parent=Os04t0492600-01
Chr04	irgsp1_rep	three_prime_UTR	24635501	24635528	.	+	.	Parent=Os04t0492600-01
Chr04	irgsp1_rep	three_prime_UTR	24635775	24636298	.	+	.	Parent=Os04t0492600-01
Chr04	irgsp1_rep	mRNA	24640500	24641442	.	+	.	ID=Os04t0492800-01;Name=Os04t0492800-01;Locus_id=Os04g0492800;CGSNL Gene Symbol=CML22;CGSNL Gene Name=CALMODULIN-LIKE PROTEIN 22;Oryzabase Gene Symbol Synonym(s)=OsCML22;Oryzabase Gene Name Synonym(s)=calmodulin-like protein 22;Note=Similar to H0425E08.6 protein.;Transcript_evidence=AK242428 (DDBJ%2C Best hit);ORF_evidence=Q25AC9 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J080089P09;Oryzabase=10507;TENOR=Os04t0492800-01;KEGG=Os04t0492800-01
Chr04	irgsp1_rep	five_prime_UTR	24640500	24640619	.	+	.	Parent=Os04t0492800-01
Chr04	irgsp1_rep	CDS	24640620	24641210	.	+	0	Parent=Os04t0492800-01
Chr04	irgsp1_rep	three_prime_UTR	24641211	24641442	.	+	.	Parent=Os04t0492800-01
Chr04	irgsp1_rep	mRNA	24644149	24647800	.	+	.	ID=Os04t0492900-01;Name=Os04t0492900-01;Locus_id=Os04g0492900;Note=Similar to H0425E08.7 protein.;Transcript_evidence=AK120369 (DDBJ%2C Best hit);ORF_evidence=Q25AC8 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=RNA-binding%2C CRM domain (IPR001890);NIAS_FLcDNA=J013070J04;Oryzabase=23504;TENOR=Os04t0492900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	24644149	24644489	.	+	.	Parent=Os04t0492900-01
Chr04	irgsp1_rep	CDS	24644490	24644519	.	+	0	Parent=Os04t0492900-01
Chr04	irgsp1_rep	CDS	24645784	24646191	.	+	0	Parent=Os04t0492900-01
Chr04	irgsp1_rep	CDS	24646535	24647119	.	+	0	Parent=Os04t0492900-01
Chr04	irgsp1_rep	three_prime_UTR	24647120	24647800	.	+	.	Parent=Os04t0492900-01
Chr04	irgsp1_rep	mRNA	24644166	24644753	.	+	.	ID=Os04t0492900-02;Name=Os04t0492900-02;Locus_id=Os04g0492900;Note=Similar to H0425E08.7 protein.;Transcript_evidence=AK120004 (DDBJ%2C Best hit);ORF_evidence=Q25AC8 (UniProt);NIAS_FLcDNA=002-184-H12;Oryzabase=23504;Expression=AK120004;TENOR=Os04t0492900-02;KEGG=Os04t0492900-02
Chr04	irgsp1_rep	five_prime_UTR	24644166	24644382	.	+	.	Parent=Os04t0492900-02
Chr04	irgsp1_rep	CDS	24644383	24644523	.	+	0	Parent=Os04t0492900-02
Chr04	irgsp1_rep	three_prime_UTR	24644524	24644753	.	+	.	Parent=Os04t0492900-02
Chr04	irgsp1_rep	mRNA	24644199	24647448	.	+	.	ID=Os04t0492900-03;Name=Os04t0492900-03;Locus_id=Os04g0492900;Note=RNA-binding%2C CRM domain domain containing protein.;Transcript_evidence=AK102780 (DDBJ%2C Best hit);ORF_evidence=Q25AC8 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=RNA-binding%2C CRM domain (IPR001890);NIAS_FLcDNA=J033107K01;Oryzabase=23504;Expression=AK102780;TENOR=Os04t0492900-03;KEGG=Os04t0492900-03
Chr04	irgsp1_rep	five_prime_UTR	24644199	24644382	.	+	.	Parent=Os04t0492900-03
Chr04	irgsp1_rep	CDS	24644383	24644519	.	+	0	Parent=Os04t0492900-03
Chr04	irgsp1_rep	CDS	24644864	24645173	.	+	1	Parent=Os04t0492900-03
Chr04	irgsp1_rep	CDS	24645784	24646191	.	+	0	Parent=Os04t0492900-03
Chr04	irgsp1_rep	CDS	24646535	24647119	.	+	0	Parent=Os04t0492900-03
Chr04	irgsp1_rep	three_prime_UTR	24647120	24647448	.	+	.	Parent=Os04t0492900-03
Chr04	irgsp1_rep	mRNA	24648004	24648863	.	-	.	ID=Os04t0493000-01;Name=Os04t0493000-01;Locus_id=Os04g0493000;Oryzabase Gene Symbol Synonym(s)=OsBBX11%2C OsSTO%2C BBX11%2C STO;Oryzabase Gene Name Synonym(s)=B-box-containing protein 11;Note=Similar to H0425E08.14 protein.;Transcript_evidence=AK061664 (DDBJ%2C Best hit);ORF_evidence=Q25AC1 (UniProt);NIAS_FLcDNA=001-036-E12;Oryzabase=11642;Expression=AK061664;TENOR=Os04t0493000-01;KEGG=Os04t0493000-01
Chr04	irgsp1_rep	CDS	24648549	24648863	.	-	0	Parent=Os04t0493000-01
Chr04	irgsp1_rep	CDS	24648214	24648453	.	-	0	Parent=Os04t0493000-01
Chr04	irgsp1_rep	three_prime_UTR	24648004	24648213	.	-	.	Parent=Os04t0493000-01
Chr04	irgsp1_rep	mRNA	24655178	24660067	.	-	.	ID=Os04t0493100-01;Name=Os04t0493100-01;Locus_id=Os04g0493100;RAP-DB Gene Symbol Synonym(s)=OsbHLH65;Oryzabase Gene Symbol Synonym(s)=OsbHLH065%2C OsbHLH65;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 065;Note=Basic helix-loop-helix transcription factor%2C Defense response;Transcript_evidence=AK059273,AK101636;ORF_evidence=Q7X7U7;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Helix-loop-helix DNA-binding domain superfamily (IPR036638),Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);NIAS_FLcDNA=001-025-C01,J033055B08;Manual Curation=October 13%2C 2020;Literature_PMID=24777821;Oryzabase=15299;TENOR=Os04t0493100-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	24659801	24660067	.	-	.	Parent=Os04t0493100-01
Chr04	irgsp1_rep	five_prime_UTR	24656514	24656558	.	-	.	Parent=Os04t0493100-01
Chr04	irgsp1_rep	CDS	24656355	24656513	.	-	0	Parent=Os04t0493100-01
Chr04	irgsp1_rep	CDS	24656185	24656250	.	-	0	Parent=Os04t0493100-01
Chr04	irgsp1_rep	CDS	24655997	24656062	.	-	0	Parent=Os04t0493100-01
Chr04	irgsp1_rep	CDS	24655852	24655905	.	-	0	Parent=Os04t0493100-01
Chr04	irgsp1_rep	CDS	24655575	24655700	.	-	0	Parent=Os04t0493100-01
Chr04	irgsp1_rep	three_prime_UTR	24655178	24655574	.	-	.	Parent=Os04t0493100-01
Chr04	irgsp1_rep	mRNA	24658670	24660066	.	-	.	ID=Os04t0493100-02;Name=Os04t0493100-02;Locus_id=Os04g0493100;Oryzabase Gene Symbol Synonym(s)=OsbHLH065%2C OsbHLH65;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 065;Note=Non-protein coding transcript.;Transcript_evidence=AK107304 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-126-C12;Oryzabase=15299;TENOR=Os04t0493100-02
Chr04	irgsp1_rep	exon	24658670	24660066	.	-	.	Parent=Os04t0493100-02
Chr04	irgsp1_rep	mRNA	24667261	24670980	.	-	.	ID=Os04t0493300-01;Name=Os04t0493300-01;Locus_id=Os04g0493300;Note=Similar to H0522A01.11 protein.;Transcript_evidence=AK064114 (DDBJ%2C Best hit);ORF_evidence=Q25AB9 (UniProt);NIAS_FLcDNA=002-101-H12;Expression=AK064114;TENOR=Os04t0493300-01;KEGG=Os04t0493300-01
Chr04	irgsp1_rep	CDS	24670782	24670980	.	-	0	Parent=Os04t0493300-01
Chr04	irgsp1_rep	CDS	24669813	24670084	.	-	2	Parent=Os04t0493300-01
Chr04	irgsp1_rep	CDS	24668846	24669082	.	-	0	Parent=Os04t0493300-01
Chr04	irgsp1_rep	CDS	24667798	24668070	.	-	0	Parent=Os04t0493300-01
Chr04	irgsp1_rep	three_prime_UTR	24667261	24667797	.	-	.	Parent=Os04t0493300-01
Chr04	irgsp1_rep	mRNA	24667566	24670952	.	-	.	ID=Os04t0493300-02;Name=Os04t0493300-02;Locus_id=Os04g0493300;Note=Similar to H0522A01.11 protein.;Transcript_evidence=AK062853 (DDBJ%2C Best hit);ORF_evidence=Q25AB9 (UniProt);NIAS_FLcDNA=001-108-A06;Expression=AK062853;TENOR=Os04t0493300-02;KEGG=Os04t0493300-02
Chr04	irgsp1_rep	five_prime_UTR	24670951	24670952	.	-	.	Parent=Os04t0493300-02
Chr04	irgsp1_rep	CDS	24670782	24670950	.	-	0	Parent=Os04t0493300-02
Chr04	irgsp1_rep	CDS	24669813	24670084	.	-	2	Parent=Os04t0493300-02
Chr04	irgsp1_rep	CDS	24668846	24669082	.	-	0	Parent=Os04t0493300-02
Chr04	irgsp1_rep	CDS	24667798	24668070	.	-	0	Parent=Os04t0493300-02
Chr04	irgsp1_rep	three_prime_UTR	24667566	24667797	.	-	.	Parent=Os04t0493300-02
Chr04	irgsp1_rep	mRNA	24687753	24689297	.	-	.	ID=Os04t0493400-01;Name=Os04t0493400-01;Locus_id=Os04g0493400;CGSNL Gene Symbol=CHT4;CGSNL Gene Name=CHITINASE 4;Oryzabase Gene Symbol Synonym(s)=Cht4(t)*(Chi4)%2C Chi4%2C Cht4%2C OsChia2b%2C Chi-4%2C CHIT2%2C OsCHIT2%2C PR3%2C OsPR3;Oryzabase Gene Name Synonym(s)=Chitinase4%2C Chitinase IIb%2C Chitinase 4%2C Pathogenesis related (PR)-3 chitinase 4%2C Chitinase-4%2C PR-3 CLASS IV CHITINASE%2C Chitinase-4(novel type);Note=Similar to Chitinase.;Transcript_evidence=AK060363 (DDBJ%2C Best hit),AK099973 (DDBJ%2C Best hit);ORF_evidence=Q7GC32 (UniProt);NIAS_FLcDNA=001-008-H09,J013128C09;Oryzabase=50;TENOR=Os04t0493400-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	24689224	24689297	.	-	.	Parent=Os04t0493400-01
Chr04	irgsp1_rep	CDS	24688941	24689223	.	-	0	Parent=Os04t0493400-01
Chr04	irgsp1_rep	CDS	24688067	24688473	.	-	2	Parent=Os04t0493400-01
Chr04	irgsp1_rep	three_prime_UTR	24687753	24688066	.	-	.	Parent=Os04t0493400-01
Chr04	irgsp1_rep	mRNA	24692701	24693326	.	-	.	ID=Os04t0493600-01;Name=Os04t0493600-01;Locus_id=Os04g0493600;Note=Similar to Lectin-C precursor (PL-C).;Transcript_evidence=AK287523 (DDBJ%2C Best hit);ORF_evidence=Q25AB8 (UniProt);GO=Molecular Function: chitin binding (GO:0008061);InterPro=Chitin-binding%2C type 1 (IPR001002),Chitin-binding%2C type 1%2C conserved site (IPR018371);NIAS_FLcDNA=J053073I22;TENOR=Os04t0493600-01;KEGG=Os04t0493600-01
Chr04	irgsp1_rep	five_prime_UTR	24693250	24693326	.	-	.	Parent=Os04t0493600-01
Chr04	irgsp1_rep	CDS	24692974	24693249	.	-	0	Parent=Os04t0493600-01
Chr04	irgsp1_rep	three_prime_UTR	24692701	24692973	.	-	.	Parent=Os04t0493600-01
Chr04	irgsp1_rep	mRNA	24708801	24709910	.	-	.	ID=Os04t0494100-02;Name=Os04t0494100-02;Locus_id=Os04g0494100;CGSNL Gene Symbol=CHT5;CGSNL Gene Name=CHITINASE 5;Oryzabase Gene Symbol Synonym(s)=Cht5%2C OsChia4a%2C OsChitIVa%2C Chia4a%2C ChitIVa%2C CHIT3%2C OsCHIT3;Oryzabase Gene Name Synonym(s)=Chitinase5%2C Chitinase 5%2C Pathogenesis related (PR)-3 chitinase 5%2C Pathogenesis related-3 chitinase 5%2C PR-3 chitinase 5%2C Class IV chitinase a%2C Chitinase IVa%2C Endochitinase A;Note=Similar to Chitinase.;Transcript_evidence=AK104242 (DDBJ%2C Best hit),AK071013 (DDBJ%2C Best hit),AK104426 (DDBJ%2C Best hit);ORF_evidence=A0B9Y6 (UniProt);NIAS_FLcDNA=006-308-C08,J023080F19,006-205-G08;Oryzabase=8127;Expression=AK104242;TENOR=Os04t0494100-02;KEGG=Os04t0494100-02 (EC:3.2.1.14)
Chr04	irgsp1_rep	five_prime_UTR	24709876	24709910	.	-	.	Parent=Os04t0494100-02
Chr04	irgsp1_rep	CDS	24709416	24709875	.	-	0	Parent=Os04t0494100-02
Chr04	irgsp1_rep	CDS	24708921	24709327	.	-	2	Parent=Os04t0494100-02
Chr04	irgsp1_rep	three_prime_UTR	24708801	24708920	.	-	.	Parent=Os04t0494100-02
Chr04	irgsp1_rep	mRNA	24712259	24717577	.	+	.	ID=Os04t0494300-00;Name=Os04t0494300-00;Locus_id=Os04g0494300;Note=Hypothetical gene.;Transcript_evidence=CT828008 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os04t0494300-00;KEGG=Os04t0494300-00;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	24712259	24712264	.	+	.	Parent=Os04t0494300-00
Chr04	irgsp1_rep	CDS	24712265	24712356	.	+	0	Parent=Os04t0494300-00
Chr04	irgsp1_rep	CDS	24717024	24717453	.	+	1	Parent=Os04t0494300-00
Chr04	irgsp1_rep	three_prime_UTR	24717454	24717577	.	+	.	Parent=Os04t0494300-00
Chr04	irgsp1_rep	mRNA	24719614	24722706	.	-	.	ID=Os04t0494400-01;Name=Os04t0494400-01;Locus_id=Os04g0494400;Note=Similar to RR4 - Corn type-A response regulator.;Transcript_evidence=AK109703 (DDBJ%2C Best hit);ORF_evidence=NP_001149868.1 (RefSeq);NIAS_FLcDNA=002-145-F10;TENOR=Os04t0494400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	24722259	24722706	.	-	.	Parent=Os04t0494400-01
Chr04	irgsp1_rep	five_prime_UTR	24721131	24721208	.	-	.	Parent=Os04t0494400-01
Chr04	irgsp1_rep	five_prime_UTR	24720862	24721055	.	-	.	Parent=Os04t0494400-01
Chr04	irgsp1_rep	CDS	24720751	24720861	.	-	0	Parent=Os04t0494400-01
Chr04	irgsp1_rep	three_prime_UTR	24719614	24720750	.	-	.	Parent=Os04t0494400-01
Chr04	irgsp1_rep	mRNA	24725907	24728708	.	+	.	ID=Os04t0494600-01;Name=Os04t0494600-01;Locus_id=Os04g0494600;Note=Protein of unknown function DUF642 family protein.;Transcript_evidence=AK110895 (DDBJ%2C Best hit);ORF_evidence=A0B9Y7 (UniProt);InterPro=Protein of unknown function DUF642 (IPR006946),Galactose-binding domain-like (IPR008979);NIAS_FLcDNA=002-173-A05;Expression=AK110895;TENOR=Os04t0494600-01;KEGG=Os04t0494600-01
Chr04	irgsp1_rep	five_prime_UTR	24725907	24726037	.	+	.	Parent=Os04t0494600-01
Chr04	irgsp1_rep	CDS	24726038	24726113	.	+	0	Parent=Os04t0494600-01
Chr04	irgsp1_rep	CDS	24727328	24727831	.	+	2	Parent=Os04t0494600-01
Chr04	irgsp1_rep	CDS	24727921	24728474	.	+	2	Parent=Os04t0494600-01
Chr04	irgsp1_rep	three_prime_UTR	24728475	24728708	.	+	.	Parent=Os04t0494600-01
Chr04	irgsp1_rep	mRNA	24740703	24742573	.	+	.	ID=Os04t0494800-01;Name=Os04t0494800-01;Locus_id=Os04g0494800;Note=Protein of unknown function DUF642 family protein.;Transcript_evidence=AK072539 (DDBJ%2C Best hit);ORF_evidence=A0B9Z0 (UniProt);InterPro=Protein of unknown function DUF642 (IPR006946);NIAS_FLcDNA=J023133J23;Expression=AK072539;TENOR=Os04t0494800-01;KEGG=Os04t0494800-01
Chr04	irgsp1_rep	five_prime_UTR	24740703	24741086	.	+	.	Parent=Os04t0494800-01
Chr04	irgsp1_rep	CDS	24741087	24741189	.	+	0	Parent=Os04t0494800-01
Chr04	irgsp1_rep	CDS	24741354	24741851	.	+	2	Parent=Os04t0494800-01
Chr04	irgsp1_rep	CDS	24741973	24742511	.	+	2	Parent=Os04t0494800-01
Chr04	irgsp1_rep	three_prime_UTR	24742512	24742573	.	+	.	Parent=Os04t0494800-01
Chr04	irgsp1_rep	mRNA	24740999	24742672	.	+	.	ID=Os04t0494800-02;Name=Os04t0494800-02;Locus_id=Os04g0494800;Note=Similar to OSIGBa0103O01.11 protein.;Transcript_evidence=AK063925 (DDBJ%2C Best hit);ORF_evidence=Q01IR3 (UniProt);InterPro=Protein of unknown function DUF642 (IPR006946);NIAS_FLcDNA=001-123-C04;Expression=AK063925;TENOR=Os04t0494800-02;KEGG=Os04t0494800-02
Chr04	irgsp1_rep	five_prime_UTR	24740999	24741086	.	+	.	Parent=Os04t0494800-02
Chr04	irgsp1_rep	CDS	24741087	24741189	.	+	0	Parent=Os04t0494800-02
Chr04	irgsp1_rep	CDS	24741354	24741859	.	+	2	Parent=Os04t0494800-02
Chr04	irgsp1_rep	three_prime_UTR	24741860	24742672	.	+	.	Parent=Os04t0494800-02
Chr04	irgsp1_rep	mRNA	24744700	24746565	.	+	.	ID=Os04t0494900-01;Name=Os04t0494900-01;Locus_id=Os04g0494900;Note=Similar to Unidentified precursor.;Transcript_evidence=AK073892 (DDBJ%2C Best hit);ORF_evidence=Q01IR3 (UniProt);InterPro=Protein of unknown function DUF642 (IPR006946);NIAS_FLcDNA=J033076M24;Expression=AK073892;TENOR=Os04t0494900-01;KEGG=Os04t0494900-01
Chr04	irgsp1_rep	five_prime_UTR	24744700	24744798	.	+	.	Parent=Os04t0494900-01
Chr04	irgsp1_rep	CDS	24744799	24744895	.	+	0	Parent=Os04t0494900-01
Chr04	irgsp1_rep	CDS	24745070	24745567	.	+	2	Parent=Os04t0494900-01
Chr04	irgsp1_rep	CDS	24745665	24746203	.	+	2	Parent=Os04t0494900-01
Chr04	irgsp1_rep	three_prime_UTR	24746204	24746565	.	+	.	Parent=Os04t0494900-01
Chr04	irgsp1_rep	mRNA	24746952	24748506	.	+	.	ID=Os04t0494950-01;Name=Os04t0494950-01;Locus_id=Os04g0494950;Note=Similar to OSIGBa0103O01.12 protein.;Transcript_evidence=AK241093 (DDBJ%2C Best hit);ORF_evidence=Q01IR1 (UniProt);InterPro=Protein of unknown function DUF642 (IPR006946);NIAS_FLcDNA=J065076G08;TENOR=Os04t0494950-01;KEGG=Os04t0494950-01
Chr04	irgsp1_rep	five_prime_UTR	24746952	24747052	.	+	.	Parent=Os04t0494950-01
Chr04	irgsp1_rep	CDS	24747053	24747137	.	+	0	Parent=Os04t0494950-01
Chr04	irgsp1_rep	CDS	24747275	24747772	.	+	2	Parent=Os04t0494950-01
Chr04	irgsp1_rep	CDS	24747865	24748400	.	+	2	Parent=Os04t0494950-01
Chr04	irgsp1_rep	three_prime_UTR	24748401	24748506	.	+	.	Parent=Os04t0494950-01
Chr04	irgsp1_rep	mRNA	24751134	24753063	.	+	.	ID=Os04t0495000-00;Name=Os04t0495000-00;Locus_id=Os04g0495000;Note=Similar to OSIGBa0103O01.12 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01IR1 (UniProt);InterPro=Protein of unknown function DUF642 (IPR006946),Galactose-binding domain-like (IPR008979);TENOR=Os04t0495000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	24751134	24751240	.	+	0	Parent=Os04t0495000-00
Chr04	irgsp1_rep	CDS	24751954	24752420	.	+	1	Parent=Os04t0495000-00
Chr04	irgsp1_rep	CDS	24752516	24753063	.	+	2	Parent=Os04t0495000-00
Chr04	irgsp1_rep	mRNA	24752570	24753003	.	-	.	ID=Os04t0495075-00;Name=Os04t0495075-00;Locus_id=Os04g0495075;Note=Hypothetical protein.;Transcript_evidence=EU949280 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0495075-00
Chr04	irgsp1_rep	five_prime_UTR	24752971	24753003	.	-	.	Parent=Os04t0495075-00
Chr04	irgsp1_rep	CDS	24752570	24752970	.	-	0	Parent=Os04t0495075-00
Chr04	irgsp1_rep	mRNA	24759664	24760118	.	-	.	ID=Os04t0495225-00;Name=Os04t0495225-00;Locus_id=Os04g0495225;Note=Similar to OSIGBa0159F11.6 protein.;Transcript_evidence=HM367095 (DDBJ);ORF_evidence=Q01IQ8 (UniProt);TENOR=Os04t0495225-00
Chr04	irgsp1_rep	CDS	24759924	24760118	.	-	0	Parent=Os04t0495225-00
Chr04	irgsp1_rep	three_prime_UTR	24759664	24759923	.	-	.	Parent=Os04t0495225-00
Chr04	irgsp1_rep	mRNA	24761107	24761706	.	+	.	ID=Os04t0495300-01;Name=Os04t0495300-01;Locus_id=Os04g0495300;Note=Similar to OSIGBa0159F11.7 protein.;Transcript_evidence=AK109232 (DDBJ%2C Best hit);ORF_evidence=Q01IQ7 (UniProt);NIAS_FLcDNA=002-156-F04;Expression=AK109232;TENOR=Os04t0495300-01;KEGG=Os04t0495300-01
Chr04	irgsp1_rep	five_prime_UTR	24761107	24761138	.	+	.	Parent=Os04t0495300-01
Chr04	irgsp1_rep	CDS	24761139	24761627	.	+	0	Parent=Os04t0495300-01
Chr04	irgsp1_rep	three_prime_UTR	24761628	24761706	.	+	.	Parent=Os04t0495300-01
Chr04	irgsp1_rep	mRNA	24766251	24769310	.	+	.	ID=Os04t0495400-01;Name=Os04t0495400-01;Locus_id=Os04g0495400;Note=DOMON domain containing protein.;Transcript_evidence=AK241329 (DDBJ%2C Best hit);ORF_evidence=Q01IQ6 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=CytoChrome b561%2C eukaryote (IPR004877),DOMON domain (IPR005018),CytoChrome b561/ferric reductase transmembrane (IPR006593);NIAS_FLcDNA=J065143N24;TENOR=Os04t0495400-01;KEGG=Os04t0495400-01
Chr04	irgsp1_rep	five_prime_UTR	24766251	24766517	.	+	.	Parent=Os04t0495400-01
Chr04	irgsp1_rep	CDS	24766518	24766733	.	+	0	Parent=Os04t0495400-01
Chr04	irgsp1_rep	CDS	24767178	24767574	.	+	0	Parent=Os04t0495400-01
Chr04	irgsp1_rep	CDS	24767655	24767950	.	+	2	Parent=Os04t0495400-01
Chr04	irgsp1_rep	CDS	24768623	24768859	.	+	0	Parent=Os04t0495400-01
Chr04	irgsp1_rep	three_prime_UTR	24768860	24769310	.	+	.	Parent=Os04t0495400-01
Chr04	irgsp1_rep	mRNA	24769684	24771562	.	-	.	ID=Os04t0495500-01;Name=Os04t0495500-01;Locus_id=Os04g0495500;CGSNL Gene Symbol=BZIP36;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 36;Oryzabase Gene Symbol Synonym(s)=OsbZIP36;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 36;Note=Similar to OSIGBa0159F11.9 protein.;Transcript_evidence=AK064429 (DDBJ%2C Best hit);ORF_evidence=Q01IQ5 (UniProt);NIAS_FLcDNA=002-110-C11;Oryzabase=10123;Expression=AK064429;TENOR=Os04t0495500-01;KEGG=Os04t0495500-01
Chr04	irgsp1_rep	five_prime_UTR	24770347	24771562	.	-	.	Parent=Os04t0495500-01
Chr04	irgsp1_rep	CDS	24769903	24770346	.	-	0	Parent=Os04t0495500-01
Chr04	irgsp1_rep	three_prime_UTR	24769684	24769902	.	-	.	Parent=Os04t0495500-01
Chr04	irgsp1_rep	mRNA	24779024	24779534	.	-	.	ID=Os04t0495700-01;Name=Os04t0495700-01;Locus_id=Os04g0495700;Note=Similar to OSIGBa0159F11.10 protein.;Transcript_evidence=AK062826 (DDBJ%2C Best hit);ORF_evidence=Q01IQ4 (UniProt);NIAS_FLcDNA=001-107-F09;TENOR=Os04t0495700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	24779446	24779534	.	-	.	Parent=Os04t0495700-01
Chr04	irgsp1_rep	CDS	24779236	24779445	.	-	0	Parent=Os04t0495700-01
Chr04	irgsp1_rep	three_prime_UTR	24779024	24779235	.	-	.	Parent=Os04t0495700-01
Chr04	irgsp1_rep	mRNA	24795663	24801649	.	+	.	ID=Os04t0495800-01;Name=Os04t0495800-01;Locus_id=Os04g0495800;CGSNL Gene Symbol=NLP2;CGSNL Gene Name=NIN-LIKE PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsNLP2;Oryzabase Gene Name Synonym(s)=OsNIN-like2%2C OsNIN-like 2%2C NIN-like2%2C NIN-like 2%2C NLP transcription factor 2%2C NODULE INCEPTION-like protein 2;Note=Similar to NIN-like protein 2 (Fragment).;Transcript_evidence=AK103154 (DDBJ%2C Best hit);ORF_evidence=Q0JC27 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Phox/Bem1p (IPR000270),Plant regulator RWP-RK (IPR003035);NIAS_FLcDNA=J033120P08;Oryzabase=21541;Expression=AK103154;TENOR=Os04t0495800-01;KEGG=Os04t0495800-01
Chr04	irgsp1_rep	five_prime_UTR	24795663	24796077	.	+	.	Parent=Os04t0495800-01
Chr04	irgsp1_rep	five_prime_UTR	24796197	24796449	.	+	.	Parent=Os04t0495800-01
Chr04	irgsp1_rep	CDS	24796450	24797320	.	+	0	Parent=Os04t0495800-01
Chr04	irgsp1_rep	CDS	24798161	24798198	.	+	2	Parent=Os04t0495800-01
Chr04	irgsp1_rep	CDS	24798334	24799068	.	+	0	Parent=Os04t0495800-01
Chr04	irgsp1_rep	CDS	24800120	24800243	.	+	0	Parent=Os04t0495800-01
Chr04	irgsp1_rep	CDS	24800376	24801418	.	+	2	Parent=Os04t0495800-01
Chr04	irgsp1_rep	three_prime_UTR	24801419	24801649	.	+	.	Parent=Os04t0495800-01
Chr04	irgsp1_rep	mRNA	24796577	24801675	.	+	.	ID=Os04t0495800-02;Name=Os04t0495800-02;Locus_id=Os04g0495800;CGSNL Gene Symbol=NLP2;CGSNL Gene Name=NIN-LIKE PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsNLP2;Oryzabase Gene Name Synonym(s)=OsNIN-like2%2C OsNIN-like 2%2C NIN-like2%2C NIN-like 2%2C NLP transcription factor 2%2C NODULE INCEPTION-like protein 2;Note=Similar to OSIGBa0159F11.11 protein.;Transcript_evidence=AK060753 (DDBJ%2C Best hit);ORF_evidence=Q0JC27 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Phox/Bem1p (IPR000270),Plant regulator RWP-RK (IPR003035);NIAS_FLcDNA=001-032-G10;Oryzabase=21541;Expression=AK060753;TENOR=Os04t0495800-02;KEGG=Os04t0495800-02
Chr04	irgsp1_rep	five_prime_UTR	24796577	24796578	.	+	.	Parent=Os04t0495800-02
Chr04	irgsp1_rep	CDS	24796579	24797320	.	+	0	Parent=Os04t0495800-02
Chr04	irgsp1_rep	CDS	24798161	24798198	.	+	2	Parent=Os04t0495800-02
Chr04	irgsp1_rep	CDS	24798334	24799068	.	+	0	Parent=Os04t0495800-02
Chr04	irgsp1_rep	CDS	24800120	24800243	.	+	0	Parent=Os04t0495800-02
Chr04	irgsp1_rep	CDS	24800376	24801418	.	+	2	Parent=Os04t0495800-02
Chr04	irgsp1_rep	three_prime_UTR	24801419	24801675	.	+	.	Parent=Os04t0495800-02
Chr04	irgsp1_rep	mRNA	24806185	24807234	.	+	.	ID=Os04t0495900-01;Name=Os04t0495900-01;Locus_id=Os04g0495900;Note=Hypothetical protein.;Transcript_evidence=AK061559 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=006-311-D02;Expression=AK061559;TENOR=Os04t0495900-01;KEGG=Os04t0495900-01
Chr04	irgsp1_rep	five_prime_UTR	24806185	24806304	.	+	.	Parent=Os04t0495900-01
Chr04	irgsp1_rep	CDS	24806305	24806375	.	+	0	Parent=Os04t0495900-01
Chr04	irgsp1_rep	CDS	24806459	24807176	.	+	1	Parent=Os04t0495900-01
Chr04	irgsp1_rep	three_prime_UTR	24807177	24807234	.	+	.	Parent=Os04t0495900-01
Chr04	irgsp1_rep	mRNA	24810332	24811141	.	-	.	ID=Os04t0496000-01;Name=Os04t0496000-01;Locus_id=Os04g0496000;Note=Glucose/ribitol dehydrogenase family protein.;Transcript_evidence=AK105166 (DDBJ%2C Best hit);ORF_evidence=Q01IF3 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-104-E10;Expression=AK105166;TENOR=Os04t0496000-01;KEGG=Os04t0496000-01
Chr04	irgsp1_rep	five_prime_UTR	24810991	24811141	.	-	.	Parent=Os04t0496000-01
Chr04	irgsp1_rep	CDS	24810562	24810990	.	-	0	Parent=Os04t0496000-01
Chr04	irgsp1_rep	three_prime_UTR	24810332	24810561	.	-	.	Parent=Os04t0496000-01
Chr04	irgsp1_rep	mRNA	24815492	24816067	.	-	.	ID=Os04t0496150-00;Name=Os04t0496150-00;Locus_id=Os04g0496150;Note=Similar to H0306B06.2 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01IF3 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);TENOR=Os04t0496150-00
Chr04	irgsp1_rep	CDS	24816030	24816067	.	-	0	Parent=Os04t0496150-00
Chr04	irgsp1_rep	CDS	24815492	24815933	.	-	1	Parent=Os04t0496150-00
Chr04	irgsp1_rep	mRNA	24830462	24831375	.	-	.	ID=Os04t0496300-01;Name=Os04t0496300-01;Locus_id=Os04g0496300;Note=Similar to H0306B06.4 protein.;Transcript_evidence=AK062810 (DDBJ%2C Best hit);ORF_evidence=Q01IF1 (UniProt);NIAS_FLcDNA=001-107-D12;Expression=AK062810;TENOR=Os04t0496300-01;KEGG=Os04t0496300-01
Chr04	irgsp1_rep	five_prime_UTR	24831261	24831375	.	-	.	Parent=Os04t0496300-01
Chr04	irgsp1_rep	CDS	24830679	24831260	.	-	0	Parent=Os04t0496300-01
Chr04	irgsp1_rep	three_prime_UTR	24830462	24830678	.	-	.	Parent=Os04t0496300-01
Chr04	irgsp1_rep	mRNA	24834417	24839782	.	+	.	ID=Os04t0496400-01;Name=Os04t0496400-01;Locus_id=Os04g0496400;Note=RNA recognition motif%2C RNP-1 domain containing protein.;Transcript_evidence=AK111787 (DDBJ%2C Best hit);ORF_evidence=Q01ID4 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515);InterPro=RNA recognition motif domain (IPR000504),GYF (IPR003169),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023095H18;Expression=AK111787;TENOR=Os04t0496400-01;KEGG=Os04t0496400-01
Chr04	irgsp1_rep	five_prime_UTR	24834417	24834566	.	+	.	Parent=Os04t0496400-01
Chr04	irgsp1_rep	CDS	24834567	24834651	.	+	0	Parent=Os04t0496400-01
Chr04	irgsp1_rep	CDS	24835338	24835466	.	+	2	Parent=Os04t0496400-01
Chr04	irgsp1_rep	CDS	24835560	24835783	.	+	2	Parent=Os04t0496400-01
Chr04	irgsp1_rep	CDS	24836161	24836370	.	+	0	Parent=Os04t0496400-01
Chr04	irgsp1_rep	CDS	24836460	24836552	.	+	0	Parent=Os04t0496400-01
Chr04	irgsp1_rep	CDS	24836662	24836700	.	+	0	Parent=Os04t0496400-01
Chr04	irgsp1_rep	CDS	24836804	24836893	.	+	0	Parent=Os04t0496400-01
Chr04	irgsp1_rep	CDS	24836977	24837079	.	+	0	Parent=Os04t0496400-01
Chr04	irgsp1_rep	CDS	24837151	24837231	.	+	2	Parent=Os04t0496400-01
Chr04	irgsp1_rep	CDS	24837692	24837768	.	+	2	Parent=Os04t0496400-01
Chr04	irgsp1_rep	CDS	24837919	24837999	.	+	0	Parent=Os04t0496400-01
Chr04	irgsp1_rep	CDS	24838928	24839019	.	+	0	Parent=Os04t0496400-01
Chr04	irgsp1_rep	CDS	24839299	24839425	.	+	1	Parent=Os04t0496400-01
Chr04	irgsp1_rep	three_prime_UTR	24839426	24839782	.	+	.	Parent=Os04t0496400-01
Chr04	irgsp1_rep	mRNA	24841362	24843684	.	-	.	ID=Os04t0496600-01;Name=Os04t0496600-01;Locus_id=Os04g0496600;Note=Similar to H0306B06.6 protein.;Transcript_evidence=AK065058 (DDBJ%2C Best hit);ORF_evidence=Q01ID3 (UniProt);NIAS_FLcDNA=J013001J09;Expression=AK065058;TENOR=Os04t0496600-01;KEGG=Os04t0496600-01
Chr04	irgsp1_rep	five_prime_UTR	24843684	24843684	.	-	.	Parent=Os04t0496600-01
Chr04	irgsp1_rep	CDS	24843449	24843683	.	-	0	Parent=Os04t0496600-01
Chr04	irgsp1_rep	CDS	24842891	24843147	.	-	2	Parent=Os04t0496600-01
Chr04	irgsp1_rep	three_prime_UTR	24842025	24842890	.	-	.	Parent=Os04t0496600-01
Chr04	irgsp1_rep	three_prime_UTR	24841891	24841937	.	-	.	Parent=Os04t0496600-01
Chr04	irgsp1_rep	three_prime_UTR	24841362	24841812	.	-	.	Parent=Os04t0496600-01
Chr04	irgsp1_rep	mRNA	24844235	24845039	.	+	.	ID=Os04t0496700-00;Name=Os04t0496700-00;Locus_id=Os04g0496700;Note=Similar to H0306B06.7 protein.;Transcript_evidence=AK356108 (DDBJ);ORF_evidence=Q01ID2 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Tetratricopeptide-like helical (IPR011990);TENOR=Os04t0496700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	24844235	24844418	.	+	.	Parent=Os04t0496700-00
Chr04	irgsp1_rep	CDS	24844419	24845039	.	+	0	Parent=Os04t0496700-00
Chr04	irgsp1_rep	mRNA	24846908	24853939	.	-	.	ID=Os04t0496800-01;Name=Os04t0496800-01;Locus_id=Os04g0496800;Note=LETM1-like domain containing protein.;Transcript_evidence=AK068782 (DDBJ%2C Best hit);ORF_evidence=Q01ID1 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),LETM1-like (IPR011685),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J013159H18;Expression=AK068782;TENOR=Os04t0496800-01;KEGG=Os04t0496800-01
Chr04	irgsp1_rep	five_prime_UTR	24853763	24853939	.	-	.	Parent=Os04t0496800-01
Chr04	irgsp1_rep	five_prime_UTR	24852812	24852872	.	-	.	Parent=Os04t0496800-01
Chr04	irgsp1_rep	CDS	24852237	24852811	.	-	0	Parent=Os04t0496800-01
Chr04	irgsp1_rep	CDS	24851810	24852122	.	-	1	Parent=Os04t0496800-01
Chr04	irgsp1_rep	CDS	24851567	24851713	.	-	0	Parent=Os04t0496800-01
Chr04	irgsp1_rep	CDS	24851371	24851459	.	-	0	Parent=Os04t0496800-01
Chr04	irgsp1_rep	CDS	24851199	24851291	.	-	1	Parent=Os04t0496800-01
Chr04	irgsp1_rep	CDS	24850576	24850702	.	-	1	Parent=Os04t0496800-01
Chr04	irgsp1_rep	CDS	24849998	24850062	.	-	0	Parent=Os04t0496800-01
Chr04	irgsp1_rep	CDS	24849744	24849915	.	-	1	Parent=Os04t0496800-01
Chr04	irgsp1_rep	CDS	24848916	24849116	.	-	0	Parent=Os04t0496800-01
Chr04	irgsp1_rep	CDS	24848767	24848814	.	-	0	Parent=Os04t0496800-01
Chr04	irgsp1_rep	CDS	24848535	24848681	.	-	0	Parent=Os04t0496800-01
Chr04	irgsp1_rep	CDS	24847773	24847855	.	-	0	Parent=Os04t0496800-01
Chr04	irgsp1_rep	CDS	24847386	24847501	.	-	1	Parent=Os04t0496800-01
Chr04	irgsp1_rep	CDS	24847199	24847284	.	-	2	Parent=Os04t0496800-01
Chr04	irgsp1_rep	three_prime_UTR	24846908	24847198	.	-	.	Parent=Os04t0496800-01
Chr04	irgsp1_rep	mRNA	24855428	24859074	.	+	.	ID=Os04t0496950-01;Name=Os04t0496950-01;Locus_id=Os04g0496950;Note=Non-protein coding transcript.;Transcript_evidence=AK288976 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090085K10;TENOR=Os04t0496950-01
Chr04	irgsp1_rep	exon	24855428	24859074	.	+	.	Parent=Os04t0496950-01
Chr04	irgsp1_rep	mRNA	24858099	24859658	.	-	.	ID=Os04t0497000-01;Name=Os04t0497000-01;Locus_id=Os04g0497000;Oryzabase Gene Symbol Synonym(s)=OsNADPH1%2C NADPH1;Oryzabase Gene Name Synonym(s)=NADPH oxidoreductase 1;Note=Similar to Allyl alcohol dehydrogenase.;Transcript_evidence=AK109382 (DDBJ%2C Best hit);ORF_evidence=Q01ID0 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),NAD(P)-binding domain (IPR016040),Polyketide synthase%2C enoylreductase (IPR020843);NIAS_FLcDNA=006-210-F02;Oryzabase=20190;TENOR=Os04t0497000-01
Chr04	irgsp1_rep	five_prime_UTR	24859551	24859658	.	-	.	Parent=Os04t0497000-01
Chr04	irgsp1_rep	CDS	24859323	24859550	.	-	0	Parent=Os04t0497000-01
Chr04	irgsp1_rep	CDS	24859010	24859190	.	-	0	Parent=Os04t0497000-01
Chr04	irgsp1_rep	CDS	24858296	24858924	.	-	2	Parent=Os04t0497000-01
Chr04	irgsp1_rep	three_prime_UTR	24858099	24858295	.	-	.	Parent=Os04t0497000-01
Chr04	irgsp1_rep	mRNA	24858111	24859594	.	-	.	ID=Os04t0497000-02;Name=Os04t0497000-02;Locus_id=Os04g0497000;Oryzabase Gene Symbol Synonym(s)=OsNADPH1%2C NADPH1;Oryzabase Gene Name Synonym(s)=NADPH oxidoreductase 1;Note=Similar to Allyl alcohol dehydrogenase.;Transcript_evidence=AK069136 (DDBJ%2C Best hit);ORF_evidence=Q01ID0 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),NAD(P)-binding domain (IPR016040),Polyketide synthase%2C enoylreductase (IPR020843);NIAS_FLcDNA=J023008C06;Oryzabase=20190;TENOR=Os04t0497000-02
Chr04	irgsp1_rep	five_prime_UTR	24859551	24859594	.	-	.	Parent=Os04t0497000-02
Chr04	irgsp1_rep	CDS	24859323	24859550	.	-	0	Parent=Os04t0497000-02
Chr04	irgsp1_rep	CDS	24859010	24859190	.	-	0	Parent=Os04t0497000-02
Chr04	irgsp1_rep	CDS	24858296	24858924	.	-	2	Parent=Os04t0497000-02
Chr04	irgsp1_rep	three_prime_UTR	24858111	24858295	.	-	.	Parent=Os04t0497000-02
Chr04	irgsp1_rep	mRNA	24863994	24867715	.	-	.	ID=Os04t0497200-01;Name=Os04t0497200-01;Locus_id=Os04g0497200;RAP-DB Gene Symbol Synonym(s)=OsGLU3;RAP-DB Gene Name Synonym(s)="endo-1%2C4-&beta%3B-glucanase 3"%2C "endo-1%2C4-beta-glucanase 3";Oryzabase Gene Symbol Synonym(s)=OsGLU3%2C OsGH9A2%2C GLU3%2C GH9A2;Oryzabase Gene Name Synonym(s)=endo-1%2C 4-b-D-glucanase 3%2C glycoside hydrolase OsGH9A2%2C glycoside hydrolase 9A2;Note=Putative membrane-bound endo-1%2C4-beta-glucanase%2C Synthesis of root cellulose%2C Modulation of root cell division and elongation;Transcript_evidence=AK243593;ORF_evidence=Q7XUK4;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase family 9 (IPR001701),Six-hairpin glycosidase-like (IPR008928),Glycoside hydrolase family 9%2C His active site (IPR018221),Glycosyl hydrolases family 9%2C Asp/Glu active sites (IPR033126);NIAS_FLcDNA=J100084A19;Manual Curation=March 14%2C 2017;Literature_PMID=21976713;Oryzabase=10530;TENOR=Os04t0497200-01;KEGG=Os04t0497200-01 (EC:3.2.1.4);Subcellular location=plasma membrane (GO:0005886), endosome (GO:0005768)
Chr04	irgsp1_rep	five_prime_UTR	24867594	24867715	.	-	.	Parent=Os04t0497200-01
Chr04	irgsp1_rep	CDS	24867215	24867593	.	-	0	Parent=Os04t0497200-01
Chr04	irgsp1_rep	CDS	24866132	24866439	.	-	2	Parent=Os04t0497200-01
Chr04	irgsp1_rep	CDS	24864772	24865542	.	-	0	Parent=Os04t0497200-01
Chr04	irgsp1_rep	CDS	24864268	24864681	.	-	0	Parent=Os04t0497200-01
Chr04	irgsp1_rep	three_prime_UTR	24863994	24864267	.	-	.	Parent=Os04t0497200-01
Chr04	irgsp1_rep	mRNA	24864345	24866466	.	+	.	ID=Os04t0497250-00;Name=Os04t0497250-00;Locus_id=Os04g0497250;Note=Non-protein coding transcript.;Transcript_evidence=tplb0042g22 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os04t0497250-00
Chr04	irgsp1_rep	exon	24864345	24864702	.	+	.	Parent=Os04t0497250-00
Chr04	irgsp1_rep	exon	24864777	24865563	.	+	.	Parent=Os04t0497250-00
Chr04	irgsp1_rep	exon	24866175	24866466	.	+	.	Parent=Os04t0497250-00
Chr04	irgsp1_rep	mRNA	24875271	24875935	.	+	.	ID=Os04t0497300-00;Name=Os04t0497300-00;Locus_id=Os04g0497300;Note=Similar to Atozi1 (Fragment).;Transcript_evidence=AF257779 (DDBJ%2C Best hit);ORF_evidence=A6N1R6 (UniProt);InterPro=Protein of unknown function DUF1138 (IPR009515);TENOR=Os04t0497300-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	24875271	24875317	.	+	.	Parent=Os04t0497300-00
Chr04	irgsp1_rep	CDS	24875318	24875453	.	+	0	Parent=Os04t0497300-00
Chr04	irgsp1_rep	CDS	24875553	24875728	.	+	2	Parent=Os04t0497300-00
Chr04	irgsp1_rep	three_prime_UTR	24875729	24875935	.	+	.	Parent=Os04t0497300-00
Chr04	irgsp1_rep	mRNA	24876058	24877846	.	-	.	ID=Os04t0497350-01;Name=Os04t0497350-01;Locus_id=Os04g0497350;CGSNL Gene Symbol=ATG10A;CGSNL Gene Name=AUTOPHAGY ASSOCIATED GENE 10A;Oryzabase Gene Symbol Synonym(s)=OsATG10a%2C Atg10a;Oryzabase Gene Name Synonym(s)=autophagy 10a%2C AUTOPHAGY RELATED10a;Note=Similar to H0306B06.12 protein.;Transcript_evidence=AK241831 (DDBJ%2C Best hit);ORF_evidence=Q01IC7 (UniProt);InterPro=Autophagy-related protein 3 (IPR007135);NIAS_FLcDNA=J065213B04;Oryzabase=9654;TENOR=Os04t0497350-01;KEGG=Os04t0497350-01
Chr04	irgsp1_rep	five_prime_UTR	24877663	24877846	.	-	.	Parent=Os04t0497350-01
Chr04	irgsp1_rep	CDS	24877504	24877662	.	-	0	Parent=Os04t0497350-01
Chr04	irgsp1_rep	CDS	24877327	24877380	.	-	0	Parent=Os04t0497350-01
Chr04	irgsp1_rep	CDS	24876727	24876826	.	-	0	Parent=Os04t0497350-01
Chr04	irgsp1_rep	CDS	24876548	24876645	.	-	2	Parent=Os04t0497350-01
Chr04	irgsp1_rep	CDS	24876259	24876444	.	-	0	Parent=Os04t0497350-01
Chr04	irgsp1_rep	three_prime_UTR	24876058	24876258	.	-	.	Parent=Os04t0497350-01
Chr04	irgsp1_rep	mRNA	24878195	24881728	.	-	.	ID=Os04t0497400-01;Name=Os04t0497400-01;Locus_id=Os04g0497400;RAP-DB Gene Symbol Synonym(s)=OsLS;RAP-DB Gene Name Synonym(s)=Lumazine Synthase;Oryzabase Gene Symbol Synonym(s)=OsLS;Oryzabase Gene Name Synonym(s)=Lumazine Synthase;Note=Lumazine synthase%2C Defense responses;Transcript_evidence=AK103493;ORF_evidence=Q7XUK6;GO=Biological Process: riboflavin biosynthetic process (GO:0009231),Molecular Function: 6%2C7-dimethyl-8-ribityllumazine synthase activity (GO:0000906),Cellular Component: riboflavin synthase complex (GO:0009349);InterPro=Lumazine/riboflavin synthase superfamily (IPR036467),Lumazine/riboflavin synthase (IPR002180),Lumazine synthase (IPR034964),6%2C7-dimethyl-8-ribityllumazine synthase%2C chloroplast (IPR017420);NIAS_FLcDNA=J033130O17;Manual Curation=October 1%2C 2020;Literature_PMID=20465413;Oryzabase=14292;Expression=AK103493;TENOR=Os04t0497400-01;KEGG=Os04t0497400-01 (EC:2.5.1.78);Subcellular location=chloroplast (GO:0009507)
Chr04	irgsp1_rep	five_prime_UTR	24881617	24881728	.	-	.	Parent=Os04t0497400-01
Chr04	irgsp1_rep	CDS	24881496	24881616	.	-	0	Parent=Os04t0497400-01
Chr04	irgsp1_rep	CDS	24881264	24881391	.	-	2	Parent=Os04t0497400-01
Chr04	irgsp1_rep	CDS	24880773	24880868	.	-	0	Parent=Os04t0497400-01
Chr04	irgsp1_rep	CDS	24879947	24880042	.	-	0	Parent=Os04t0497400-01
Chr04	irgsp1_rep	CDS	24879250	24879328	.	-	0	Parent=Os04t0497400-01
Chr04	irgsp1_rep	CDS	24879074	24879120	.	-	2	Parent=Os04t0497400-01
Chr04	irgsp1_rep	CDS	24878565	24878624	.	-	0	Parent=Os04t0497400-01
Chr04	irgsp1_rep	CDS	24878452	24878490	.	-	0	Parent=Os04t0497400-01
Chr04	irgsp1_rep	three_prime_UTR	24878195	24878451	.	-	.	Parent=Os04t0497400-01
Chr04	irgsp1_rep	mRNA	24878145	24881688	.	-	.	ID=Os04t0497400-02;Name=Os04t0497400-02;Locus_id=Os04g0497400;Oryzabase Gene Symbol Synonym(s)=OsLS;Oryzabase Gene Name Synonym(s)=Lumazine Synthase;Note=Similar to 6%2C7-dimethyl-8-ribityllumazine synthase (Fragment).;Transcript_evidence=AK070530 (DDBJ%2C Best hit);ORF_evidence=Q01IC6 (UniProt);GO=Biological Process: riboflavin biosynthetic process (GO:0009231),Cellular Component: riboflavin synthase complex (GO:0009349);InterPro=6%2C7-dimethyl-8-ribityllumazine synthase (IPR002180),6%2C7-dimethyl-8-ribityllumazine synthase%2C chloroplast (IPR017420);NIAS_FLcDNA=J023061H21;Oryzabase=14292;Expression=AK070530;TENOR=Os04t0497400-02;KEGG=Os04t0497400-02 (EC:2.5.1.-)
Chr04	irgsp1_rep	five_prime_UTR	24881617	24881688	.	-	.	Parent=Os04t0497400-02
Chr04	irgsp1_rep	CDS	24881496	24881616	.	-	0	Parent=Os04t0497400-02
Chr04	irgsp1_rep	CDS	24881264	24881391	.	-	2	Parent=Os04t0497400-02
Chr04	irgsp1_rep	CDS	24880773	24880868	.	-	0	Parent=Os04t0497400-02
Chr04	irgsp1_rep	CDS	24879947	24880042	.	-	0	Parent=Os04t0497400-02
Chr04	irgsp1_rep	CDS	24879250	24879328	.	-	0	Parent=Os04t0497400-02
Chr04	irgsp1_rep	CDS	24879074	24879120	.	-	2	Parent=Os04t0497400-02
Chr04	irgsp1_rep	CDS	24878565	24878624	.	-	0	Parent=Os04t0497400-02
Chr04	irgsp1_rep	CDS	24878452	24878490	.	-	0	Parent=Os04t0497400-02
Chr04	irgsp1_rep	three_prime_UTR	24878145	24878451	.	-	.	Parent=Os04t0497400-02
Chr04	irgsp1_rep	mRNA	24882776	24886709	.	-	.	ID=Os04t0497600-01;Name=Os04t0497600-01;Locus_id=Os04g0497600;Note=Lupus La protein family protein.;Transcript_evidence=AK059415 (DDBJ%2C Best hit),AK099054 (DDBJ%2C Best hit);ORF_evidence=Q01IC5 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Cellular Component: nucleus (GO:0005634),Cellular Component: ribonucleoprotein complex (GO:0030529),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723);InterPro=RNA recognition motif domain (IPR000504),Lupus La protein (IPR002344),RNA-binding protein Lupus La (IPR006630),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Nucleotide-binding%2C alpha-beta plait (IPR012677),RNA-binding motif (IPR014886);NIAS_FLcDNA=001-027-D05,J013149O10;TENOR=Os04t0497600-01
Chr04	irgsp1_rep	five_prime_UTR	24886680	24886709	.	-	.	Parent=Os04t0497600-01
Chr04	irgsp1_rep	CDS	24886614	24886679	.	-	0	Parent=Os04t0497600-01
Chr04	irgsp1_rep	CDS	24886427	24886505	.	-	0	Parent=Os04t0497600-01
Chr04	irgsp1_rep	CDS	24886167	24886319	.	-	2	Parent=Os04t0497600-01
Chr04	irgsp1_rep	CDS	24885836	24885978	.	-	2	Parent=Os04t0497600-01
Chr04	irgsp1_rep	CDS	24885490	24885638	.	-	0	Parent=Os04t0497600-01
Chr04	irgsp1_rep	CDS	24885090	24885170	.	-	1	Parent=Os04t0497600-01
Chr04	irgsp1_rep	CDS	24884702	24885002	.	-	1	Parent=Os04t0497600-01
Chr04	irgsp1_rep	CDS	24883918	24884065	.	-	0	Parent=Os04t0497600-01
Chr04	irgsp1_rep	CDS	24883535	24883613	.	-	2	Parent=Os04t0497600-01
Chr04	irgsp1_rep	CDS	24883033	24883141	.	-	1	Parent=Os04t0497600-01
Chr04	irgsp1_rep	three_prime_UTR	24882776	24883032	.	-	.	Parent=Os04t0497600-01
Chr04	irgsp1_rep	mRNA	24882846	24883143	.	-	.	ID=Os04t0497600-02;Name=Os04t0497600-02;Locus_id=Os04g0497600;Note=Non-protein coding transcript.;Transcript_evidence=AK058610 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-018-A09;TENOR=Os04t0497600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	exon	24882846	24883143	.	-	.	Parent=Os04t0497600-02
Chr04	irgsp1_rep	mRNA	24889983	24891470	.	+	.	ID=Os04t0497700-01;Name=Os04t0497700-01;Locus_id=Os04g0497700;Oryzabase Gene Symbol Synonym(s)=OsBBX12%2C OsC%2C OsCCT16%2C BBX12%2C CCT16;Oryzabase Gene Name Synonym(s)=B-box-containing protein 12%2C CCT domain-containing gene 16%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 16%2C CCT domain protein 16%2C CONSTANS-like protein%2C CONSTANS-like gene C;Note=Similar to CONSTANS-like protein.;Transcript_evidence=AK121024 (DDBJ%2C Best hit);ORF_evidence=Q01IC4 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C B-box (IPR000315),CCT domain (IPR010402);NIAS_FLcDNA=J023049O11;Oryzabase=11643;Expression=AK121024;TENOR=Os04t0497700-01;KEGG=Os04t0497700-01
Chr04	irgsp1_rep	five_prime_UTR	24889983	24890106	.	+	.	Parent=Os04t0497700-01
Chr04	irgsp1_rep	CDS	24890107	24890736	.	+	0	Parent=Os04t0497700-01
Chr04	irgsp1_rep	CDS	24890831	24891202	.	+	0	Parent=Os04t0497700-01
Chr04	irgsp1_rep	three_prime_UTR	24891203	24891470	.	+	.	Parent=Os04t0497700-01
Chr04	irgsp1_rep	mRNA	24889984	24891483	.	+	.	ID=Os04t0497700-02;Name=Os04t0497700-02;Locus_id=Os04g0497700;Oryzabase Gene Symbol Synonym(s)=OsBBX12%2C OsC%2C OsCCT16%2C BBX12%2C CCT16;Oryzabase Gene Name Synonym(s)=B-box-containing protein 12%2C CCT domain-containing gene 16%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 16%2C CCT domain protein 16%2C CONSTANS-like protein%2C CONSTANS-like gene C;Note=Similar to OSIGBa0092E01.11 protein.;Transcript_evidence=AK059443 (DDBJ%2C Best hit);ORF_evidence=Q01IC4 (UniProt);NIAS_FLcDNA=001-027-H11;Oryzabase=11643;TENOR=Os04t0497700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	24889984	24890106	.	+	.	Parent=Os04t0497700-02
Chr04	irgsp1_rep	CDS	24890107	24890156	.	+	0	Parent=Os04t0497700-02
Chr04	irgsp1_rep	CDS	24891179	24891302	.	+	1	Parent=Os04t0497700-02
Chr04	irgsp1_rep	three_prime_UTR	24891303	24891483	.	+	.	Parent=Os04t0497700-02
Chr04	irgsp1_rep	mRNA	24894293	24896500	.	+	.	ID=Os04t0497900-01;Name=Os04t0497900-01;Locus_id=Os04g0497900;RAP-DB Gene Symbol Synonym(s)=SWL1;RAP-DB Gene Name Synonym(s)=SNOW-WHITE LEAF1%2C SNOW-WHITE LEAF 1;Oryzabase Gene Symbol Synonym(s)=SWL1;Oryzabase Gene Name Synonym(s)=SNOW-WHITE LEAF1%2C SNOW-WHITE LEAF 1;Note=Unknown protein with the N-terminal chloroplast transit peptide%2C Formation of thylakoid membranes;Transcript_evidence=AK100471;ORF_evidence=Q7XUK7;NIAS_FLcDNA=J023093F18;Manual Curation=November 21%2C 2014;Literature_PMID=24151203;Oryzabase=16711;TENOR=Os04t0497900-01;KEGG=Os04t0497900-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	24894293	24894356	.	+	.	Parent=Os04t0497900-01
Chr04	irgsp1_rep	CDS	24894357	24896243	.	+	0	Parent=Os04t0497900-01
Chr04	irgsp1_rep	three_prime_UTR	24896244	24896500	.	+	.	Parent=Os04t0497900-01
Chr04	irgsp1_rep	mRNA	24898873	24900756	.	+	.	ID=Os04t0498000-01;Name=Os04t0498000-01;Locus_id=Os04g0498000;Note=Protein of unknown function DUF828%2C plant family protein.;Transcript_evidence=AK107880 (DDBJ%2C Best hit);ORF_evidence=Q01IC2 (UniProt);InterPro=Domain of unknown function DUF828 (IPR008546);NIAS_FLcDNA=002-134-D05;Expression=AK107880;TENOR=Os04t0498000-01;KEGG=Os04t0498000-01
Chr04	irgsp1_rep	five_prime_UTR	24898873	24898874	.	+	.	Parent=Os04t0498000-01
Chr04	irgsp1_rep	CDS	24898875	24898913	.	+	0	Parent=Os04t0498000-01
Chr04	irgsp1_rep	CDS	24899176	24899396	.	+	0	Parent=Os04t0498000-01
Chr04	irgsp1_rep	CDS	24900506	24900590	.	+	1	Parent=Os04t0498000-01
Chr04	irgsp1_rep	three_prime_UTR	24900591	24900756	.	+	.	Parent=Os04t0498000-01
Chr04	irgsp1_rep	mRNA	24899632	24900373	.	-	.	ID=Os04t0498101-00;Name=Os04t0498101-00;Locus_id=Os04g0498101;Note=Hypothetical gene.;Transcript_evidence=BT087026 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0498101-00
Chr04	irgsp1_rep	five_prime_UTR	24900373	24900373	.	-	.	Parent=Os04t0498101-00
Chr04	irgsp1_rep	CDS	24900285	24900372	.	-	0	Parent=Os04t0498101-00
Chr04	irgsp1_rep	CDS	24900118	24900209	.	-	2	Parent=Os04t0498101-00
Chr04	irgsp1_rep	CDS	24899632	24899822	.	-	0	Parent=Os04t0498101-00
Chr04	irgsp1_rep	mRNA	24906567	24909166	.	-	.	ID=Os04t0498200-01;Name=Os04t0498200-01;Locus_id=Os04g0498200;Oryzabase Gene Symbol Synonym(s)=OsCOX6b2%2C COX6b2%2C OsCOX6b-2%2C COX6b-2;Oryzabase Gene Name Synonym(s)=cytoChrome c oxidase subunit VIb-2;Note=Similar to OSIGBa0092E01.14 protein.;Transcript_evidence=AK111257 (DDBJ%2C Best hit);ORF_evidence=Q01IC1 (UniProt);GO=Cellular Component: mitochondrion (GO:0005739),Molecular Function: cytoChrome-c oxidase activity (GO:0004129);InterPro=CytoChrome c oxidase%2C subunit VIb (IPR003213);NIAS_FLcDNA=002-180-E09;Oryzabase=20183;TENOR=Os04t0498200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	24909047	24909166	.	-	.	Parent=Os04t0498200-01
Chr04	irgsp1_rep	CDS	24909038	24909046	.	-	0	Parent=Os04t0498200-01
Chr04	irgsp1_rep	CDS	24907852	24907940	.	-	0	Parent=Os04t0498200-01
Chr04	irgsp1_rep	CDS	24907691	24907772	.	-	1	Parent=Os04t0498200-01
Chr04	irgsp1_rep	CDS	24906795	24906848	.	-	0	Parent=Os04t0498200-01
Chr04	irgsp1_rep	three_prime_UTR	24906567	24906794	.	-	.	Parent=Os04t0498200-01
Chr04	irgsp1_rep	mRNA	24911518	24913911	.	-	.	ID=Os04t0498400-01;Name=Os04t0498400-01;Locus_id=Os04g0498400;Note=Conserved hypothetical protein.;Transcript_evidence=AK065472 (DDBJ%2C Best hit);ORF_evidence=B9EUT6 (UniProt);NIAS_FLcDNA=J013020B04;TENOR=Os04t0498400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	24913530	24913911	.	-	.	Parent=Os04t0498400-01
Chr04	irgsp1_rep	five_prime_UTR	24911821	24912879	.	-	.	Parent=Os04t0498400-01
Chr04	irgsp1_rep	CDS	24911623	24911820	.	-	0	Parent=Os04t0498400-01
Chr04	irgsp1_rep	three_prime_UTR	24911518	24911622	.	-	.	Parent=Os04t0498400-01
Chr04	irgsp1_rep	mRNA	24915054	24918786	.	+	.	ID=Os04t0498600-01;Name=Os04t0498600-01;Locus_id=Os04g0498600;RAP-DB Gene Symbol Synonym(s)=SAMDC%2C SamDC%2C AdoMetDC%2C AdoMetDC1%2C OsSAMDC1;RAP-DB Gene Name Synonym(s)=S-ADENOSYLMETHIONINE DECARBOXYLASE%2C S-adenosylmethionine decarboxylase%2C S-adenosylmethionine decarboxylase proenzyme%2C S-adenosylmethionine decarboxylase alpha chain%2C S-adenosylmethionine decarboxylase beta chain%2C S-adenosylmethionine decarboxylase 1;CGSNL Gene Symbol=SAMDC;CGSNL Gene Name=S-ADENOSYLMETHIONINE DECARBOXYLASE;Oryzabase Gene Symbol Synonym(s)=SamDC%2C AdoMetDC%2C AdoMetDC1%2C OsSAMDC1;Oryzabase Gene Name Synonym(s)=S-adenosylmethionine decarboxylase%2C S-adenosylmethionine decarboxylase proenzyme%2C S-adenosylmethionine decarboxylase alpha chain%2C S-adenosylmethionine decarboxylase beta chain%2C S-adenosylmethionine decarboxylase 1;Note=S-adenosylmethionine decarboxylase%2C Polyamine biosynthesis%2C Salt and drought stresses%2C Abiotic stress;Transcript_evidence=AF067194 (Genbank),Y07766 (Genbank),AK072162 (Genbank),AK067166 (Genbank),AK098918 (Genbank),AK100589 (Genbank);ORF_evidence=A2XV58 (UniProt),Q0JC10 (UniProt),B7ED49 (UniProt);GO=Biological Process: spermine biosynthetic process (GO:0006597),Biological Process: spermidine biosynthetic process (GO:0008295),Molecular Function: adenosylmethionine decarboxylase activity (GO:0004014);InterPro=S-adenosylmethionine decarboxylase (IPR001985),S-adenosylmethionine decarboxylase%2C core (IPR016067),S-adenosylmethionine decarboxylase%2C conserved site (IPR018166),S-adenosylmethionine decarboxylase subgroup (IPR018167);NIAS_FLcDNA=J013129L10,J013096P09,J013002M21,J023106D22;Manual Curation=June 19%2C 2009;Literature_PMID=Theor.Appl.Genet.(2000)100:782-788,11139406,14727183;Oryzabase=8209;TENOR=Os04t0498600-01
Chr04	irgsp1_rep	five_prime_UTR	24915054	24915285	.	+	.	Parent=Os04t0498600-01
Chr04	irgsp1_rep	five_prime_UTR	24916226	24916375	.	+	.	Parent=Os04t0498600-01
Chr04	irgsp1_rep	five_prime_UTR	24916459	24916658	.	+	.	Parent=Os04t0498600-01
Chr04	irgsp1_rep	CDS	24916659	24917855	.	+	0	Parent=Os04t0498600-01
Chr04	irgsp1_rep	three_prime_UTR	24917856	24918786	.	+	.	Parent=Os04t0498600-01
Chr04	irgsp1_rep	mRNA	24916918	24918134	.	+	.	ID=Os04t0498600-02;Name=Os04t0498600-02;Locus_id=Os04g0498600;CGSNL Gene Symbol=SAMDC;CGSNL Gene Name=S-ADENOSYLMETHIONINE DECARBOXYLASE;Oryzabase Gene Symbol Synonym(s)=SamDC%2C AdoMetDC%2C AdoMetDC1%2C OsSAMDC1;Oryzabase Gene Name Synonym(s)=S-adenosylmethionine decarboxylase%2C S-adenosylmethionine decarboxylase proenzyme%2C S-adenosylmethionine decarboxylase alpha chain%2C S-adenosylmethionine decarboxylase beta chain%2C S-adenosylmethionine decarboxylase 1;Note=Similar to cDNA clone:J013002M21%2C full insert sequence.;Transcript_evidence=AK062001 (DDBJ%2C Best hit);ORF_evidence=B7ED49 (UniProt);GO=Biological Process: spermine biosynthetic process (GO:0006597),Biological Process: spermidine biosynthetic process (GO:0008295),Molecular Function: adenosylmethionine decarboxylase activity (GO:0004014);InterPro=S-adenosylmethionine decarboxylase (IPR001985),S-adenosylmethionine decarboxylase%2C core (IPR016067),S-adenosylmethionine decarboxylase subgroup (IPR018167);NIAS_FLcDNA=001-043-D05;Oryzabase=8209;Expression=AK062001;TENOR=Os04t0498600-02;KEGG=Os04t0498600-02 (EC:4.1.1.50)
Chr04	irgsp1_rep	five_prime_UTR	24916918	24916919	.	+	.	Parent=Os04t0498600-02
Chr04	irgsp1_rep	CDS	24916920	24917855	.	+	0	Parent=Os04t0498600-02
Chr04	irgsp1_rep	three_prime_UTR	24917856	24918134	.	+	.	Parent=Os04t0498600-02
Chr04	irgsp1_rep	mRNA	24916227	24918098	.	-	.	ID=Os04t0498650-00;Name=Os04t0498650-00;Locus_id=Os04g0498650;Note=Hypothetical gene.;Transcript_evidence=BT016840 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0498650-00;KEGG=Os04t0498650-00
Chr04	irgsp1_rep	five_prime_UTR	24917895	24918098	.	-	.	Parent=Os04t0498650-00
Chr04	irgsp1_rep	CDS	24917406	24917894	.	-	0	Parent=Os04t0498650-00
Chr04	irgsp1_rep	three_prime_UTR	24916459	24917405	.	-	.	Parent=Os04t0498650-00
Chr04	irgsp1_rep	three_prime_UTR	24916227	24916375	.	-	.	Parent=Os04t0498650-00
Chr04	irgsp1_rep	mRNA	24920550	24924654	.	-	.	ID=Os04t0498700-01;Name=Os04t0498700-01;Locus_id=Os04g0498700;Oryzabase Gene Symbol Synonym(s)=AGP%2C OsAGP;Oryzabase Gene Name Synonym(s)=Arabinogalactan protein;Note=Haem peroxidase family protein.;Transcript_evidence=AK059661 (DDBJ%2C Best hit);ORF_evidence=P93553 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793);NIAS_FLcDNA=001-031-E02;Oryzabase=23024;Expression=AK059661;TENOR=Os04t0498700-01;KEGG=Os04t0498700-01
Chr04	irgsp1_rep	five_prime_UTR	24924298	24924654	.	-	.	Parent=Os04t0498700-01
Chr04	irgsp1_rep	CDS	24923542	24924297	.	-	0	Parent=Os04t0498700-01
Chr04	irgsp1_rep	CDS	24922540	24922719	.	-	0	Parent=Os04t0498700-01
Chr04	irgsp1_rep	CDS	24921225	24921390	.	-	0	Parent=Os04t0498700-01
Chr04	irgsp1_rep	CDS	24920686	24921110	.	-	2	Parent=Os04t0498700-01
Chr04	irgsp1_rep	three_prime_UTR	24920550	24920685	.	-	.	Parent=Os04t0498700-01
Chr04	irgsp1_rep	mRNA	24920483	24924569	.	-	.	ID=Os04t0498700-02;Name=Os04t0498700-02;Locus_id=Os04g0498700;Oryzabase Gene Symbol Synonym(s)=AGP%2C OsAGP;Oryzabase Gene Name Synonym(s)=Arabinogalactan protein;Note=Haem peroxidase family protein.;Transcript_evidence=AK121011 (DDBJ%2C Best hit);ORF_evidence=P93553 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793);NIAS_FLcDNA=J023047C08;Oryzabase=23024;Expression=AK121011;TENOR=Os04t0498700-02;KEGG=Os04t0498700-02
Chr04	irgsp1_rep	five_prime_UTR	24924298	24924569	.	-	.	Parent=Os04t0498700-02
Chr04	irgsp1_rep	CDS	24923542	24924297	.	-	0	Parent=Os04t0498700-02
Chr04	irgsp1_rep	CDS	24922540	24922719	.	-	0	Parent=Os04t0498700-02
Chr04	irgsp1_rep	CDS	24921225	24921390	.	-	0	Parent=Os04t0498700-02
Chr04	irgsp1_rep	CDS	24920686	24921110	.	-	2	Parent=Os04t0498700-02
Chr04	irgsp1_rep	three_prime_UTR	24920483	24920685	.	-	.	Parent=Os04t0498700-02
Chr04	irgsp1_rep	mRNA	24920581	24924268	.	+	.	ID=Os04t0498725-00;Name=Os04t0498725-00;Locus_id=Os04g0498725;Note=Hypothetical protein.;Transcript_evidence=tplb0026b16 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0498725-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	24920581	24920658	.	+	.	Parent=Os04t0498725-00
Chr04	irgsp1_rep	CDS	24920659	24921100	.	+	0	Parent=Os04t0498725-00
Chr04	irgsp1_rep	CDS	24921210	24921404	.	+	2	Parent=Os04t0498725-00
Chr04	irgsp1_rep	CDS	24922551	24922718	.	+	2	Parent=Os04t0498725-00
Chr04	irgsp1_rep	CDS	24923541	24923665	.	+	2	Parent=Os04t0498725-00
Chr04	irgsp1_rep	three_prime_UTR	24923666	24924268	.	+	.	Parent=Os04t0498725-00
Chr04	irgsp1_rep	mRNA	24932120	24935908	.	+	.	ID=Os04t0498800-01;Name=Os04t0498800-01;Locus_id=Os04g0498800;Note=Similar to Cell division control protein 48 homolog B (AtCDC48b).;Transcript_evidence=AK069052 (DDBJ%2C Best hit),AK099085 (DDBJ%2C Best hit),AK099259 (DDBJ%2C Best hit);ORF_evidence=B8AR97 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);NIAS_FLcDNA=J023004B08,J023004D02,J023004D09;Expression=AK069052;TENOR=Os04t0498800-01;KEGG=Os04t0498800-01
Chr04	irgsp1_rep	five_prime_UTR	24932120	24932284	.	+	.	Parent=Os04t0498800-01
Chr04	irgsp1_rep	CDS	24932285	24932485	.	+	0	Parent=Os04t0498800-01
Chr04	irgsp1_rep	CDS	24932587	24932631	.	+	0	Parent=Os04t0498800-01
Chr04	irgsp1_rep	CDS	24932797	24932852	.	+	0	Parent=Os04t0498800-01
Chr04	irgsp1_rep	CDS	24932957	24933104	.	+	1	Parent=Os04t0498800-01
Chr04	irgsp1_rep	CDS	24933173	24933276	.	+	0	Parent=Os04t0498800-01
Chr04	irgsp1_rep	CDS	24933463	24933562	.	+	1	Parent=Os04t0498800-01
Chr04	irgsp1_rep	CDS	24933726	24934010	.	+	0	Parent=Os04t0498800-01
Chr04	irgsp1_rep	CDS	24934081	24934250	.	+	0	Parent=Os04t0498800-01
Chr04	irgsp1_rep	CDS	24934609	24934737	.	+	1	Parent=Os04t0498800-01
Chr04	irgsp1_rep	CDS	24935095	24935191	.	+	1	Parent=Os04t0498800-01
Chr04	irgsp1_rep	CDS	24935304	24935381	.	+	0	Parent=Os04t0498800-01
Chr04	irgsp1_rep	CDS	24935457	24935780	.	+	0	Parent=Os04t0498800-01
Chr04	irgsp1_rep	three_prime_UTR	24935781	24935908	.	+	.	Parent=Os04t0498800-01
Chr04	irgsp1_rep	mRNA	24936060	24938782	.	-	.	ID=Os04t0498900-01;Name=Os04t0498900-01;Locus_id=Os04g0498900;Note=Similar to N-acetyltransferase ESCO1.;Transcript_evidence=AK241738 (DDBJ%2C Best hit);ORF_evidence=B6TTW6 (UniProt);InterPro=Acyl-CoA N-acyltransferase (IPR016181);NIAS_FLcDNA=J065201C14;TENOR=Os04t0498900-01;KEGG=Os04t0498900-01 (EC:2.3.1.-)
Chr04	irgsp1_rep	five_prime_UTR	24938633	24938782	.	-	.	Parent=Os04t0498900-01
Chr04	irgsp1_rep	five_prime_UTR	24938328	24938328	.	-	.	Parent=Os04t0498900-01
Chr04	irgsp1_rep	CDS	24938248	24938327	.	-	0	Parent=Os04t0498900-01
Chr04	irgsp1_rep	CDS	24937751	24937994	.	-	1	Parent=Os04t0498900-01
Chr04	irgsp1_rep	CDS	24937562	24937654	.	-	0	Parent=Os04t0498900-01
Chr04	irgsp1_rep	CDS	24937249	24937323	.	-	0	Parent=Os04t0498900-01
Chr04	irgsp1_rep	CDS	24936811	24937163	.	-	0	Parent=Os04t0498900-01
Chr04	irgsp1_rep	CDS	24936262	24936397	.	-	1	Parent=Os04t0498900-01
Chr04	irgsp1_rep	three_prime_UTR	24936060	24936261	.	-	.	Parent=Os04t0498900-01
Chr04	irgsp1_rep	mRNA	24940515	24943098	.	+	.	ID=Os04t0499100-01;Name=Os04t0499100-01;Locus_id=Os04g0499100;Note=Biopterin transport-related protein BT1 family protein.;Transcript_evidence=AK072725 (DDBJ%2C Best hit);ORF_evidence=NP_197887.1 (RefSeq);InterPro=Biopterin transport-related protein BT1 (IPR004324),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J023135H18;Expression=AK072725;TENOR=Os04t0499100-01;KEGG=Os04t0499100-01
Chr04	irgsp1_rep	five_prime_UTR	24940515	24940642	.	+	.	Parent=Os04t0499100-01
Chr04	irgsp1_rep	CDS	24940643	24940985	.	+	0	Parent=Os04t0499100-01
Chr04	irgsp1_rep	CDS	24941081	24941340	.	+	2	Parent=Os04t0499100-01
Chr04	irgsp1_rep	CDS	24941452	24941547	.	+	0	Parent=Os04t0499100-01
Chr04	irgsp1_rep	CDS	24941652	24941822	.	+	0	Parent=Os04t0499100-01
Chr04	irgsp1_rep	CDS	24942025	24942738	.	+	0	Parent=Os04t0499100-01
Chr04	irgsp1_rep	three_prime_UTR	24942739	24943098	.	+	.	Parent=Os04t0499100-01
Chr04	irgsp1_rep	mRNA	24940204	24941700	.	-	.	ID=Os04t0499150-00;Name=Os04t0499150-00;Locus_id=Os04g0499150;Note=Non-protein coding transcript.;Transcript_evidence=AK110968 (DDBJ%2C Secondary hit);ORF_evidence=NONE;TENOR=Os04t0499150-00
Chr04	irgsp1_rep	exon	24940204	24941700	.	-	.	Parent=Os04t0499150-00
Chr04	irgsp1_rep	mRNA	24943121	24945222	.	-	.	ID=Os04t0499200-01;Name=Os04t0499200-01;Locus_id=Os04g0499200;Note=Enhancer of rudimentary family protein.;Transcript_evidence=AK069440 (DDBJ%2C Best hit);ORF_evidence=B6TE44 (UniProt);GO=Biological Process: cell cycle (GO:0007049);InterPro=Enhancer of rudimentary (IPR000781);NIAS_FLcDNA=J023021I12;Expression=AK069440;TENOR=Os04t0499200-01;KEGG=Os04t0499200-01
Chr04	irgsp1_rep	five_prime_UTR	24944993	24945222	.	-	.	Parent=Os04t0499200-01
Chr04	irgsp1_rep	five_prime_UTR	24943766	24944446	.	-	.	Parent=Os04t0499200-01
Chr04	irgsp1_rep	CDS	24943527	24943765	.	-	0	Parent=Os04t0499200-01
Chr04	irgsp1_rep	CDS	24943337	24943430	.	-	1	Parent=Os04t0499200-01
Chr04	irgsp1_rep	three_prime_UTR	24943121	24943336	.	-	.	Parent=Os04t0499200-01
Chr04	irgsp1_rep	mRNA	24946171	24952278	.	-	.	ID=Os04t0499300-01;Name=Os04t0499300-01;Locus_id=Os04g0499300;CGSNL Gene Symbol=RYMV1;CGSNL Gene Name=RESISTANCE TO YELLOW MOTTLE VIRUS-1;Oryzabase Gene Symbol Synonym(s)=Rymv1%2C eIF(iso)4G%2C OsRYMV1%2C OseIF(iso)4G;Oryzabase Gene Name Synonym(s)=Rice yellow mottle virus resistant 1%2C Resistance to yellow mottle virus-1%2C eukaryotic translation initiation factor 4G;Note=MIF4-like%2C type 1/2/3 domain containing protein.;Transcript_evidence=AK065553 (DDBJ%2C Best hit);ORF_evidence=Q84PB3 (UniProt);GO=Biological Process: RNA metabolic process (GO:0016070),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=MIF4G-like%2C type 3 (IPR003890),Initiation factor eIF-4 gamma%2C MA3 (IPR003891),MIF4-like%2C type 1/2/3 (IPR016021),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013027N14;Oryzabase=6419;Expression=AK065553;TENOR=Os04t0499300-01;KEGG=Os04t0499300-01
Chr04	irgsp1_rep	five_prime_UTR	24952278	24952278	.	-	.	Parent=Os04t0499300-01
Chr04	irgsp1_rep	CDS	24952135	24952277	.	-	0	Parent=Os04t0499300-01
Chr04	irgsp1_rep	CDS	24951919	24951964	.	-	1	Parent=Os04t0499300-01
Chr04	irgsp1_rep	CDS	24951173	24951244	.	-	0	Parent=Os04t0499300-01
Chr04	irgsp1_rep	CDS	24950253	24950348	.	-	0	Parent=Os04t0499300-01
Chr04	irgsp1_rep	CDS	24949904	24950125	.	-	0	Parent=Os04t0499300-01
Chr04	irgsp1_rep	CDS	24949229	24949326	.	-	0	Parent=Os04t0499300-01
Chr04	irgsp1_rep	CDS	24949007	24949094	.	-	1	Parent=Os04t0499300-01
Chr04	irgsp1_rep	CDS	24948570	24948920	.	-	0	Parent=Os04t0499300-01
Chr04	irgsp1_rep	CDS	24948249	24948497	.	-	0	Parent=Os04t0499300-01
Chr04	irgsp1_rep	CDS	24946655	24947710	.	-	0	Parent=Os04t0499300-01
Chr04	irgsp1_rep	three_prime_UTR	24946171	24946654	.	-	.	Parent=Os04t0499300-01
Chr04	irgsp1_rep	mRNA	24946272	24948593	.	-	.	ID=Os04t0499300-02;Name=Os04t0499300-02;Locus_id=Os04g0499300;CGSNL Gene Symbol=RYMV1;CGSNL Gene Name=RESISTANCE TO YELLOW MOTTLE VIRUS-1;Oryzabase Gene Symbol Synonym(s)=Rymv1%2C eIF(iso)4G%2C OsRYMV1%2C OseIF(iso)4G;Oryzabase Gene Name Synonym(s)=Rice yellow mottle virus resistant 1%2C Resistance to yellow mottle virus-1%2C eukaryotic translation initiation factor 4G;Note=Similar to Eukaryotic initiation factor-like protein.;Transcript_evidence=AK060761 (DDBJ%2C Best hit);ORF_evidence=Q84PB3 (UniProt);GO=Biological Process: RNA metabolic process (GO:0016070),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=MIF4G-like%2C type 3 (IPR003890),Initiation factor eIF-4 gamma%2C MA3 (IPR003891),MIF4-like%2C type 1/2/3 (IPR016021),Armadillo-type fold (IPR016024);NIAS_FLcDNA=001-033-A02;Oryzabase=6419;Expression=AK060761;TENOR=Os04t0499300-02;KEGG=Os04t0499300-02
Chr04	irgsp1_rep	CDS	24948570	24948593	.	-	0	Parent=Os04t0499300-02
Chr04	irgsp1_rep	CDS	24948249	24948497	.	-	0	Parent=Os04t0499300-02
Chr04	irgsp1_rep	CDS	24946655	24947710	.	-	0	Parent=Os04t0499300-02
Chr04	irgsp1_rep	three_prime_UTR	24946272	24946654	.	-	.	Parent=Os04t0499300-02
Chr04	irgsp1_rep	mRNA	24946269	24952224	.	+	.	ID=Os04t0499500-00;Name=Os04t0499500-00;Locus_id=Os04g0499500;Note=Hypothetical protein.;Transcript_evidence=tplb0022f02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0499500-00
Chr04	irgsp1_rep	five_prime_UTR	24946269	24946733	.	+	.	Parent=Os04t0499500-00
Chr04	irgsp1_rep	CDS	24946734	24947057	.	+	0	Parent=Os04t0499500-00
Chr04	irgsp1_rep	three_prime_UTR	24947058	24947696	.	+	.	Parent=Os04t0499500-00
Chr04	irgsp1_rep	three_prime_UTR	24948234	24948487	.	+	.	Parent=Os04t0499500-00
Chr04	irgsp1_rep	three_prime_UTR	24948568	24948919	.	+	.	Parent=Os04t0499500-00
Chr04	irgsp1_rep	three_prime_UTR	24949006	24949094	.	+	.	Parent=Os04t0499500-00
Chr04	irgsp1_rep	three_prime_UTR	24949229	24949329	.	+	.	Parent=Os04t0499500-00
Chr04	irgsp1_rep	three_prime_UTR	24949916	24950111	.	+	.	Parent=Os04t0499500-00
Chr04	irgsp1_rep	three_prime_UTR	24950233	24950335	.	+	.	Parent=Os04t0499500-00
Chr04	irgsp1_rep	three_prime_UTR	24951162	24951250	.	+	.	Parent=Os04t0499500-00
Chr04	irgsp1_rep	three_prime_UTR	24951917	24952224	.	+	.	Parent=Os04t0499500-00
Chr04	irgsp1_rep	mRNA	24963088	24966542	.	+	.	ID=Os04t0499800-01;Name=Os04t0499800-01;Locus_id=Os04g0499800;Note=Hypothetical protein.;Transcript_evidence=AK121326 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J023117E10;TENOR=Os04t0499800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	24963088	24963200	.	+	.	Parent=Os04t0499800-01
Chr04	irgsp1_rep	CDS	24963201	24963451	.	+	0	Parent=Os04t0499800-01
Chr04	irgsp1_rep	CDS	24963567	24963618	.	+	1	Parent=Os04t0499800-01
Chr04	irgsp1_rep	three_prime_UTR	24963619	24963772	.	+	.	Parent=Os04t0499800-01
Chr04	irgsp1_rep	three_prime_UTR	24963865	24966542	.	+	.	Parent=Os04t0499800-01
Chr04	irgsp1_rep	mRNA	24971453	24972346	.	-	.	ID=Os04t0500200-01;Name=Os04t0500200-01;Locus_id=Os04g0500200;Note=Conserved hypothetical protein.;Transcript_evidence=AK105358 (DDBJ%2C Best hit);ORF_evidence=B8ARA3 (UniProt);NIAS_FLcDNA=001-119-C09;Expression=AK105358;TENOR=Os04t0500200-01;KEGG=Os04t0500200-01
Chr04	irgsp1_rep	five_prime_UTR	24972326	24972346	.	-	.	Parent=Os04t0500200-01
Chr04	irgsp1_rep	CDS	24972094	24972325	.	-	0	Parent=Os04t0500200-01
Chr04	irgsp1_rep	CDS	24971564	24971679	.	-	2	Parent=Os04t0500200-01
Chr04	irgsp1_rep	three_prime_UTR	24971453	24971563	.	-	.	Parent=Os04t0500200-01
Chr04	irgsp1_rep	mRNA	24973156	24974044	.	+	.	ID=Os04t0500300-01;Name=Os04t0500300-01;Locus_id=Os04g0500300;Note=Conserved hypothetical protein.;Transcript_evidence=AK121460 (DDBJ%2C Best hit);ORF_evidence=B9FFY4 (UniProt);NIAS_FLcDNA=J023143M04;Expression=AK121460;TENOR=Os04t0500300-01;KEGG=Os04t0500300-01
Chr04	irgsp1_rep	five_prime_UTR	24973156	24973204	.	+	.	Parent=Os04t0500300-01
Chr04	irgsp1_rep	CDS	24973205	24973322	.	+	0	Parent=Os04t0500300-01
Chr04	irgsp1_rep	CDS	24973440	24973526	.	+	2	Parent=Os04t0500300-01
Chr04	irgsp1_rep	CDS	24973625	24973878	.	+	2	Parent=Os04t0500300-01
Chr04	irgsp1_rep	three_prime_UTR	24973879	24974044	.	+	.	Parent=Os04t0500300-01
Chr04	irgsp1_rep	mRNA	24975996	24976704	.	+	.	ID=Os04t0500400-00;Name=Os04t0500400-00;Locus_id=Os04g0500400;Note=Similar to Hydroxyproline-rich glycoprotein DZ-HRGP precursor.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001174002.1 (RefSeq);TENOR=Os04t0500400-00;KEGG=Os04t0500400-00
Chr04	irgsp1_rep	CDS	24975996	24976119	.	+	0	Parent=Os04t0500400-00
Chr04	irgsp1_rep	CDS	24976241	24976318	.	+	2	Parent=Os04t0500400-00
Chr04	irgsp1_rep	CDS	24976454	24976704	.	+	2	Parent=Os04t0500400-00
Chr04	irgsp1_rep	mRNA	24982051	24983036	.	-	.	ID=Os04t0500600-01;Name=Os04t0500600-01;Locus_id=Os04g0500600;Note=Hypothetical protein.;Transcript_evidence=AK107850 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-134-A08;Expression=AK107850;TENOR=Os04t0500600-01;KEGG=Os04t0500600-01
Chr04	irgsp1_rep	five_prime_UTR	24982416	24983036	.	-	.	Parent=Os04t0500600-01
Chr04	irgsp1_rep	CDS	24982110	24982415	.	-	0	Parent=Os04t0500600-01
Chr04	irgsp1_rep	three_prime_UTR	24982051	24982109	.	-	.	Parent=Os04t0500600-01
Chr04	irgsp1_rep	mRNA	24993910	24999383	.	+	.	ID=Os04t0500700-01;Name=Os04t0500700-01;Locus_id=Os04g0500700;CGSNL Gene Symbol=HCT1;CGSNL Gene Name=HYDROXYCINNAMOYLTRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=OsHCT1;Oryzabase Gene Name Synonym(s)=Hydroxycinnamoyltransferase 1%2C hydroxycinnamoyl CoA:shikimate/quinate hydroxycinnamoyl transferase 1;Note=Similar to Hydroxyanthranilate hydroxycinnamoyltransferase 3.;Transcript_evidence=AK119237 (DDBJ%2C Best hit);ORF_evidence=B6UCS8 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=001-116-D12;Oryzabase=10356;Expression=AK119237;TENOR=Os04t0500700-01;KEGG=Os04t0500700-01
Chr04	irgsp1_rep	five_prime_UTR	24993910	24994117	.	+	.	Parent=Os04t0500700-01
Chr04	irgsp1_rep	five_prime_UTR	24994235	24994240	.	+	.	Parent=Os04t0500700-01
Chr04	irgsp1_rep	CDS	24994241	24994666	.	+	0	Parent=Os04t0500700-01
Chr04	irgsp1_rep	CDS	24998197	24999099	.	+	0	Parent=Os04t0500700-01
Chr04	irgsp1_rep	three_prime_UTR	24999100	24999383	.	+	.	Parent=Os04t0500700-01
Chr04	irgsp1_rep	mRNA	24994004	24999530	.	+	.	ID=Os04t0500700-02;Name=Os04t0500700-02;Locus_id=Os04g0500700;CGSNL Gene Symbol=HCT1;CGSNL Gene Name=HYDROXYCINNAMOYLTRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=OsHCT1;Oryzabase Gene Name Synonym(s)=Hydroxycinnamoyltransferase 1%2C hydroxycinnamoyl CoA:shikimate/quinate hydroxycinnamoyl transferase 1;Note=Similar to Hydroxyanthranilate hydroxycinnamoyltransferase 3.;Transcript_evidence=AK072528 (DDBJ%2C Best hit),AK104637 (DDBJ%2C Best hit);ORF_evidence=B6UCS8 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J023131B01,006-310-D12;Oryzabase=10356;TENOR=Os04t0500700-02
Chr04	irgsp1_rep	five_prime_UTR	24994004	24994117	.	+	.	Parent=Os04t0500700-02
Chr04	irgsp1_rep	five_prime_UTR	24994235	24994240	.	+	.	Parent=Os04t0500700-02
Chr04	irgsp1_rep	CDS	24994241	24994666	.	+	0	Parent=Os04t0500700-02
Chr04	irgsp1_rep	CDS	24998197	24999099	.	+	0	Parent=Os04t0500700-02
Chr04	irgsp1_rep	three_prime_UTR	24999100	24999530	.	+	.	Parent=Os04t0500700-02
Chr04	irgsp1_rep	mRNA	25003551	25006535	.	+	.	ID=Os04t0500900-00;Name=Os04t0500900-00;Locus_id=Os04g0500900;Oryzabase Gene Symbol Synonym(s)=OsPP2C42%2C PP2C42%2C OsPP67;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C42%2C protein phosphatase 2C 42%2C protein phosphatase 67;Note=Similar to H0311C03.1 protein.;Transcript_evidence=BT085959 (DDBJ);ORF_evidence=Q01I93 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);Oryzabase=17916;TENOR=Os04t0500900-00;KEGG=Os04t0500900-00 (EC:3.1.3.16)
Chr04	irgsp1_rep	CDS	25003551	25003733	.	+	0	Parent=Os04t0500900-00
Chr04	irgsp1_rep	CDS	25003836	25003905	.	+	0	Parent=Os04t0500900-00
Chr04	irgsp1_rep	CDS	25004304	25004409	.	+	2	Parent=Os04t0500900-00
Chr04	irgsp1_rep	CDS	25004576	25004693	.	+	1	Parent=Os04t0500900-00
Chr04	irgsp1_rep	CDS	25004778	25004900	.	+	0	Parent=Os04t0500900-00
Chr04	irgsp1_rep	CDS	25005012	25005147	.	+	0	Parent=Os04t0500900-00
Chr04	irgsp1_rep	CDS	25005233	25005309	.	+	2	Parent=Os04t0500900-00
Chr04	irgsp1_rep	CDS	25005398	25005454	.	+	0	Parent=Os04t0500900-00
Chr04	irgsp1_rep	three_prime_UTR	25005455	25005501	.	+	.	Parent=Os04t0500900-00
Chr04	irgsp1_rep	three_prime_UTR	25006427	25006535	.	+	.	Parent=Os04t0500900-00
Chr04	irgsp1_rep	mRNA	25008080	25010015	.	-	.	ID=Os04t0501000-00;Name=Os04t0501000-00;Locus_id=Os04g0501000;Oryzabase Gene Name Synonym(s)=Ribosomal protein HL25;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=CU406043 (DDBJ%2C Best hit);ORF_evidence=Q01I92 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L23/L25%2C conserved site (IPR001014),Ribosomal protein L23/L25%2C N-terminal (IPR005633),Nucleotide-binding%2C alpha-beta plait (IPR012677),Ribosomal protein L23/L15e (IPR012678),Ribosomal protein L25/L23 (IPR013025),Ribosomal protein L23 (IPR019985);Oryzabase=17669;TENOR=Os04t0501000-00;KEGG=Os04t0501000-00
Chr04	irgsp1_rep	five_prime_UTR	25009959	25010015	.	-	.	Parent=Os04t0501000-00
Chr04	irgsp1_rep	five_prime_UTR	25009143	25009169	.	-	.	Parent=Os04t0501000-00
Chr04	irgsp1_rep	CDS	25009130	25009142	.	-	0	Parent=Os04t0501000-00
Chr04	irgsp1_rep	CDS	25008418	25008778	.	-	2	Parent=Os04t0501000-00
Chr04	irgsp1_rep	CDS	25008254	25008338	.	-	1	Parent=Os04t0501000-00
Chr04	irgsp1_rep	three_prime_UTR	25008080	25008253	.	-	.	Parent=Os04t0501000-00
Chr04	irgsp1_rep	mRNA	25011878	25015485	.	+	.	ID=Os04t0501100-00;Name=Os04t0501100-00;Locus_id=Os04g0501100;Oryzabase Gene Symbol Synonym(s)=OsMRS2-9;Oryzabase Gene Name Synonym(s)=MRS2/MGT family member 9;Note=Similar to Magnesium transporter MRS2-C.;Transcript_evidence=FP100806 (DDBJ);ORF_evidence=Q0JBZ6 (UniProt);Oryzabase=14380;TENOR=Os04t0501100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	25011878	25011980	.	+	.	Parent=Os04t0501100-00
Chr04	irgsp1_rep	CDS	25011981	25012523	.	+	0	Parent=Os04t0501100-00
Chr04	irgsp1_rep	CDS	25013169	25013297	.	+	0	Parent=Os04t0501100-00
Chr04	irgsp1_rep	CDS	25013385	25013390	.	+	0	Parent=Os04t0501100-00
Chr04	irgsp1_rep	three_prime_UTR	25013391	25013715	.	+	.	Parent=Os04t0501100-00
Chr04	irgsp1_rep	three_prime_UTR	25013842	25013889	.	+	.	Parent=Os04t0501100-00
Chr04	irgsp1_rep	three_prime_UTR	25015084	25015485	.	+	.	Parent=Os04t0501100-00
Chr04	irgsp1_rep	mRNA	25017254	25020545	.	+	.	ID=Os04t0501200-01;Name=Os04t0501200-01;Locus_id=Os04g0501200;Oryzabase Gene Symbol Synonym(s)=TagI;Note=Similar to H0311C03.4 protein.;Transcript_evidence=AK069193 (DDBJ%2C Best hit);ORF_evidence=Q01I90 (UniProt);GO=Biological Process: DNA repair (GO:0006281),Biological Process: base-excision repair (GO:0006284),Molecular Function: catalytic activity (GO:0003824),Molecular Function: DNA-3-methyladenine glycosylase I activity (GO:0008725);InterPro=Methyladenine glycosylase (IPR005019),DNA glycosylase (IPR011257);NIAS_FLcDNA=J023004E10;Oryzabase=21276;TENOR=Os04t0501200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	25017254	25017706	.	+	.	Parent=Os04t0501200-01
Chr04	irgsp1_rep	CDS	25017707	25018184	.	+	0	Parent=Os04t0501200-01
Chr04	irgsp1_rep	CDS	25019163	25019220	.	+	2	Parent=Os04t0501200-01
Chr04	irgsp1_rep	CDS	25019302	25019385	.	+	1	Parent=Os04t0501200-01
Chr04	irgsp1_rep	CDS	25019472	25019613	.	+	1	Parent=Os04t0501200-01
Chr04	irgsp1_rep	CDS	25019929	25020318	.	+	0	Parent=Os04t0501200-01
Chr04	irgsp1_rep	three_prime_UTR	25020319	25020545	.	+	.	Parent=Os04t0501200-01
Chr04	irgsp1_rep	mRNA	25035213	25036754	.	-	.	ID=Os04t0501500-00;Name=Os04t0501500-00;Locus_id=Os04g0501500;Note=BTB domain containing protein.;Transcript_evidence=AK358495 (DDBJ);ORF_evidence=Q01I89 (UniProt);GO=Biological Process: potassium ion transport (GO:0006813),Cellular Component: voltage-gated potassium channel complex (GO:0008076),Cellular Component: membrane (GO:0016020),Molecular Function: voltage-gated potassium channel activity (GO:0005249),Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),Potassium channel%2C voltage dependent%2C Kv%2C tetramerisation (IPR003131),Six-bladed beta-propeller%2C TolB-like (IPR011042),Quinoprotein amine dehydrogenase%2C beta chain-like (IPR011044),BTB/POZ fold (IPR011333);TENOR=Os04t0501500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	25036583	25036754	.	-	.	Parent=Os04t0501500-00
Chr04	irgsp1_rep	CDS	25035218	25036582	.	-	0	Parent=Os04t0501500-00
Chr04	irgsp1_rep	three_prime_UTR	25035213	25035217	.	-	.	Parent=Os04t0501500-00
Chr04	irgsp1_rep	mRNA	25038929	25045771	.	-	.	ID=Os04t0501600-01;Name=Os04t0501600-01;Locus_id=Os04g0501600;Oryzabase Gene Symbol Synonym(s)=BIP106;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 106%2C BRI1-interacting protein 106%2C brassinosteroid receptor kinase-interacting protein 106;Note=AT hook%2C DNA-binding%2C conserved site domain containing protein.;Transcript_evidence=AK068612 (DDBJ%2C Best hit);ORF_evidence=Q01I88 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989);NIAS_FLcDNA=J013155D11;Oryzabase=13683;Expression=AK068612;TENOR=Os04t0501600-01;KEGG=Os04t0501600-01
Chr04	irgsp1_rep	five_prime_UTR	25045623	25045771	.	-	.	Parent=Os04t0501600-01
Chr04	irgsp1_rep	CDS	25045515	25045622	.	-	0	Parent=Os04t0501600-01
Chr04	irgsp1_rep	CDS	25045092	25045295	.	-	0	Parent=Os04t0501600-01
Chr04	irgsp1_rep	CDS	25044775	25044956	.	-	0	Parent=Os04t0501600-01
Chr04	irgsp1_rep	CDS	25043829	25043979	.	-	1	Parent=Os04t0501600-01
Chr04	irgsp1_rep	CDS	25043555	25043746	.	-	0	Parent=Os04t0501600-01
Chr04	irgsp1_rep	CDS	25042725	25042775	.	-	0	Parent=Os04t0501600-01
Chr04	irgsp1_rep	CDS	25041913	25042647	.	-	0	Parent=Os04t0501600-01
Chr04	irgsp1_rep	CDS	25041388	25041489	.	-	0	Parent=Os04t0501600-01
Chr04	irgsp1_rep	CDS	25041207	25041289	.	-	0	Parent=Os04t0501600-01
Chr04	irgsp1_rep	CDS	25040756	25040807	.	-	1	Parent=Os04t0501600-01
Chr04	irgsp1_rep	CDS	25040568	25040636	.	-	0	Parent=Os04t0501600-01
Chr04	irgsp1_rep	CDS	25040463	25040497	.	-	0	Parent=Os04t0501600-01
Chr04	irgsp1_rep	CDS	25039861	25039932	.	-	1	Parent=Os04t0501600-01
Chr04	irgsp1_rep	CDS	25039274	25039778	.	-	1	Parent=Os04t0501600-01
Chr04	irgsp1_rep	three_prime_UTR	25038929	25039273	.	-	.	Parent=Os04t0501600-01
Chr04	irgsp1_rep	mRNA	25038921	25043746	.	-	.	ID=Os04t0501600-02;Name=Os04t0501600-02;Locus_id=Os04g0501600;Oryzabase Gene Symbol Synonym(s)=BIP106;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 106%2C BRI1-interacting protein 106%2C brassinosteroid receptor kinase-interacting protein 106;Note=Similar to H0311C03.6 protein.;Transcript_evidence=AK068884 (DDBJ%2C Best hit);ORF_evidence=Q01I88 (UniProt);NIAS_FLcDNA=J023002E10;Oryzabase=13683;Expression=AK068884;TENOR=Os04t0501600-02;KEGG=Os04t0501600-02
Chr04	irgsp1_rep	CDS	25043555	25043746	.	-	0	Parent=Os04t0501600-02
Chr04	irgsp1_rep	CDS	25042725	25042775	.	-	0	Parent=Os04t0501600-02
Chr04	irgsp1_rep	CDS	25041913	25042647	.	-	0	Parent=Os04t0501600-02
Chr04	irgsp1_rep	CDS	25041388	25041489	.	-	0	Parent=Os04t0501600-02
Chr04	irgsp1_rep	CDS	25041207	25041289	.	-	0	Parent=Os04t0501600-02
Chr04	irgsp1_rep	CDS	25040756	25040807	.	-	1	Parent=Os04t0501600-02
Chr04	irgsp1_rep	CDS	25040568	25040636	.	-	0	Parent=Os04t0501600-02
Chr04	irgsp1_rep	CDS	25040463	25040497	.	-	0	Parent=Os04t0501600-02
Chr04	irgsp1_rep	CDS	25039861	25039932	.	-	1	Parent=Os04t0501600-02
Chr04	irgsp1_rep	CDS	25039274	25039778	.	-	1	Parent=Os04t0501600-02
Chr04	irgsp1_rep	three_prime_UTR	25038921	25039273	.	-	.	Parent=Os04t0501600-02
Chr04	irgsp1_rep	mRNA	25048428	25054437	.	+	.	ID=Os04t0501700-01;Name=Os04t0501700-01;Locus_id=Os04g0501700;Note=Spc97/Spc98 family protein.;Transcript_evidence=AK103837 (DDBJ%2C Best hit);ORF_evidence=Q01I87 (UniProt);GO=Biological Process: microtubule cytoskeleton organization (GO:0000226),Cellular Component: spindle pole (GO:0000922),Cellular Component: microtubule organizing center (GO:0005815);InterPro=Spc97/Spc98 (IPR007259);NIAS_FLcDNA=J033148G19;Expression=AK103837;TENOR=Os04t0501700-01;KEGG=Os04t0501700-01
Chr04	irgsp1_rep	five_prime_UTR	25048428	25048520	.	+	.	Parent=Os04t0501700-01
Chr04	irgsp1_rep	CDS	25048521	25048589	.	+	0	Parent=Os04t0501700-01
Chr04	irgsp1_rep	CDS	25048690	25048754	.	+	0	Parent=Os04t0501700-01
Chr04	irgsp1_rep	CDS	25048845	25048908	.	+	1	Parent=Os04t0501700-01
Chr04	irgsp1_rep	CDS	25049569	25049703	.	+	0	Parent=Os04t0501700-01
Chr04	irgsp1_rep	CDS	25049792	25049923	.	+	0	Parent=Os04t0501700-01
Chr04	irgsp1_rep	CDS	25050233	25050316	.	+	0	Parent=Os04t0501700-01
Chr04	irgsp1_rep	CDS	25050401	25050499	.	+	0	Parent=Os04t0501700-01
Chr04	irgsp1_rep	CDS	25050755	25050846	.	+	0	Parent=Os04t0501700-01
Chr04	irgsp1_rep	CDS	25051043	25051115	.	+	1	Parent=Os04t0501700-01
Chr04	irgsp1_rep	CDS	25051239	25051391	.	+	0	Parent=Os04t0501700-01
Chr04	irgsp1_rep	CDS	25051484	25051603	.	+	0	Parent=Os04t0501700-01
Chr04	irgsp1_rep	CDS	25051689	25051742	.	+	0	Parent=Os04t0501700-01
Chr04	irgsp1_rep	CDS	25051951	25052034	.	+	0	Parent=Os04t0501700-01
Chr04	irgsp1_rep	CDS	25052194	25052268	.	+	0	Parent=Os04t0501700-01
Chr04	irgsp1_rep	CDS	25052348	25052491	.	+	0	Parent=Os04t0501700-01
Chr04	irgsp1_rep	CDS	25052567	25052692	.	+	0	Parent=Os04t0501700-01
Chr04	irgsp1_rep	CDS	25052779	25052886	.	+	0	Parent=Os04t0501700-01
Chr04	irgsp1_rep	CDS	25052961	25053023	.	+	0	Parent=Os04t0501700-01
Chr04	irgsp1_rep	CDS	25053103	25053177	.	+	0	Parent=Os04t0501700-01
Chr04	irgsp1_rep	CDS	25053672	25053865	.	+	0	Parent=Os04t0501700-01
Chr04	irgsp1_rep	CDS	25053956	25054082	.	+	1	Parent=Os04t0501700-01
Chr04	irgsp1_rep	three_prime_UTR	25054083	25054437	.	+	.	Parent=Os04t0501700-01
Chr04	irgsp1_rep	mRNA	25056744	25058963	.	+	.	ID=Os04t0501800-00;Name=Os04t0501800-00;Locus_id=Os04g0501800;Note=Protein of unknown function DUF1068 family protein.;Transcript_evidence=CT835035 (DDBJ%2C Best hit);ORF_evidence=Q01I86 (UniProt);InterPro=Protein of unknown function DUF1068 (IPR010471);TENOR=Os04t0501800-00;KEGG=Os04t0501800-00
Chr04	irgsp1_rep	five_prime_UTR	25056744	25056823	.	+	.	Parent=Os04t0501800-00
Chr04	irgsp1_rep	CDS	25056824	25057067	.	+	0	Parent=Os04t0501800-00
Chr04	irgsp1_rep	CDS	25057367	25057390	.	+	2	Parent=Os04t0501800-00
Chr04	irgsp1_rep	CDS	25058381	25058703	.	+	2	Parent=Os04t0501800-00
Chr04	irgsp1_rep	three_prime_UTR	25058704	25058963	.	+	.	Parent=Os04t0501800-00
Chr04	irgsp1_rep	mRNA	25062518	25067130	.	+	.	ID=Os04t0502100-01;Name=Os04t0502100-01;Locus_id=Os04g0502100;Note=Similar to H0311C03.10 protein.;Transcript_evidence=AK066956 (DDBJ%2C Best hit);ORF_evidence=Q01I84 (UniProt);NIAS_FLcDNA=J013092M08;Expression=AK066956;TENOR=Os04t0502100-01;KEGG=Os04t0502100-01
Chr04	irgsp1_rep	five_prime_UTR	25062518	25062590	.	+	.	Parent=Os04t0502100-01
Chr04	irgsp1_rep	five_prime_UTR	25063261	25063598	.	+	.	Parent=Os04t0502100-01
Chr04	irgsp1_rep	five_prime_UTR	25063684	25064362	.	+	.	Parent=Os04t0502100-01
Chr04	irgsp1_rep	CDS	25064363	25064768	.	+	0	Parent=Os04t0502100-01
Chr04	irgsp1_rep	CDS	25065247	25065596	.	+	2	Parent=Os04t0502100-01
Chr04	irgsp1_rep	CDS	25066361	25066447	.	+	0	Parent=Os04t0502100-01
Chr04	irgsp1_rep	CDS	25066623	25066787	.	+	0	Parent=Os04t0502100-01
Chr04	irgsp1_rep	three_prime_UTR	25066788	25067130	.	+	.	Parent=Os04t0502100-01
Chr04	irgsp1_rep	mRNA	25067634	25075188	.	+	.	ID=Os04t0502200-01;Name=Os04t0502200-01;Locus_id=Os04g0502200;Note=Transport protein Trs120 domain containing protein.;Transcript_evidence=AK066572 (DDBJ%2C Best hit);ORF_evidence=Q01I83 (UniProt);InterPro=TRAPP II complex%2C Trs120 (IPR013935);NIAS_FLcDNA=J013070O10;Expression=AK066572;TENOR=Os04t0502200-01;KEGG=Os04t0502200-01
Chr04	irgsp1_rep	five_prime_UTR	25067634	25067699	.	+	.	Parent=Os04t0502200-01
Chr04	irgsp1_rep	CDS	25067700	25068113	.	+	0	Parent=Os04t0502200-01
Chr04	irgsp1_rep	CDS	25068801	25069001	.	+	0	Parent=Os04t0502200-01
Chr04	irgsp1_rep	CDS	25069106	25069288	.	+	0	Parent=Os04t0502200-01
Chr04	irgsp1_rep	CDS	25069738	25069847	.	+	0	Parent=Os04t0502200-01
Chr04	irgsp1_rep	CDS	25070080	25070139	.	+	1	Parent=Os04t0502200-01
Chr04	irgsp1_rep	CDS	25070383	25070674	.	+	1	Parent=Os04t0502200-01
Chr04	irgsp1_rep	CDS	25071603	25071846	.	+	0	Parent=Os04t0502200-01
Chr04	irgsp1_rep	CDS	25072034	25072912	.	+	2	Parent=Os04t0502200-01
Chr04	irgsp1_rep	CDS	25073609	25074568	.	+	2	Parent=Os04t0502200-01
Chr04	irgsp1_rep	CDS	25074788	25075008	.	+	2	Parent=Os04t0502200-01
Chr04	irgsp1_rep	three_prime_UTR	25075009	25075188	.	+	.	Parent=Os04t0502200-01
Chr04	irgsp1_rep	mRNA	25076814	25079035	.	-	.	ID=Os04t0502300-01;Name=Os04t0502300-01;Locus_id=Os04g0502300;Note=Similar to 40S ribosomal protein S11.;Transcript_evidence=AK120520 (DDBJ%2C Best hit);ORF_evidence=Q01I56 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S17 (IPR000266),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),Ribosomal protein S17%2C archaeal (IPR019978),Ribosomal protein S17%2C conserved site (IPR019979);NIAS_FLcDNA=J013124K01;Expression=AK120520;TENOR=Os04t0502300-01;KEGG=Os04t0502300-01
Chr04	irgsp1_rep	five_prime_UTR	25078952	25079035	.	-	.	Parent=Os04t0502300-01
Chr04	irgsp1_rep	CDS	25078940	25078951	.	-	0	Parent=Os04t0502300-01
Chr04	irgsp1_rep	CDS	25078505	25078545	.	-	0	Parent=Os04t0502300-01
Chr04	irgsp1_rep	CDS	25078317	25078417	.	-	1	Parent=Os04t0502300-01
Chr04	irgsp1_rep	CDS	25077530	25077675	.	-	2	Parent=Os04t0502300-01
Chr04	irgsp1_rep	CDS	25077353	25077441	.	-	0	Parent=Os04t0502300-01
Chr04	irgsp1_rep	CDS	25077068	25077161	.	-	1	Parent=Os04t0502300-01
Chr04	irgsp1_rep	three_prime_UTR	25076814	25077067	.	-	.	Parent=Os04t0502300-01
Chr04	irgsp1_rep	mRNA	25102568	25107581	.	+	.	ID=Os04t0502800-01;Name=Os04t0502800-01;Locus_id=Os04g0502800;CGSNL Gene Symbol=MFS2;CGSNL Gene Name=MAJOR FACILITATOR SUPERFAMILY 2;Oryzabase Gene Symbol Synonym(s)=OsMFS2;Oryzabase Gene Name Synonym(s)=major facilitator superfamily 2;Note=Similar to Nodulin-like protein.;Transcript_evidence=AK099877 (DDBJ%2C Best hit);ORF_evidence=Q01I55 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Nodulin-like (IPR010658),Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J013111H21;Oryzabase=21385;Expression=AK099877;TENOR=Os04t0502800-01;KEGG=Os04t0502800-01
Chr04	irgsp1_rep	five_prime_UTR	25102568	25102568	.	+	.	Parent=Os04t0502800-01
Chr04	irgsp1_rep	CDS	25102569	25102871	.	+	0	Parent=Os04t0502800-01
Chr04	irgsp1_rep	CDS	25105453	25106363	.	+	0	Parent=Os04t0502800-01
Chr04	irgsp1_rep	CDS	25106740	25107223	.	+	1	Parent=Os04t0502800-01
Chr04	irgsp1_rep	three_prime_UTR	25107224	25107581	.	+	.	Parent=Os04t0502800-01
Chr04	irgsp1_rep	mRNA	25105443	25105913	.	-	.	ID=Os04t0502850-00;Name=Os04t0502850-00;Locus_id=Os04g0502850;Note=Non-protein coding transcript.;Transcript_evidence=EU950160 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0502850-00
Chr04	irgsp1_rep	exon	25105443	25105913	.	-	.	Parent=Os04t0502850-00
Chr04	irgsp1_rep	mRNA	25111078	25115169	.	+	.	ID=Os04t0502900-01;Name=Os04t0502900-01;Locus_id=Os04g0502900;CGSNL Gene Symbol=MICU1;CGSNL Gene Name=MITOCHONDRIAL CALCIUM UPTAKE 1;Oryzabase Gene Symbol Synonym(s)=OsMICU1;Oryzabase Gene Name Synonym(s)=calcium uptake protein MICU1%2C mitochondrial calcium uptake 1;Note=EF-Hand type domain containing protein.;Transcript_evidence=AK059306 (DDBJ%2C Best hit),AK099122 (DDBJ%2C Best hit);ORF_evidence=Q01I54 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=001-025-G01,J023039L05;Oryzabase=23088;Expression=AK059306;TENOR=Os04t0502900-01;KEGG=Os04t0502900-01
Chr04	irgsp1_rep	five_prime_UTR	25111078	25111225	.	+	.	Parent=Os04t0502900-01
Chr04	irgsp1_rep	CDS	25111226	25111538	.	+	0	Parent=Os04t0502900-01
Chr04	irgsp1_rep	CDS	25112072	25112139	.	+	2	Parent=Os04t0502900-01
Chr04	irgsp1_rep	CDS	25112228	25112451	.	+	0	Parent=Os04t0502900-01
Chr04	irgsp1_rep	CDS	25112699	25112782	.	+	1	Parent=Os04t0502900-01
Chr04	irgsp1_rep	CDS	25113363	25113576	.	+	1	Parent=Os04t0502900-01
Chr04	irgsp1_rep	CDS	25114022	25114198	.	+	0	Parent=Os04t0502900-01
Chr04	irgsp1_rep	CDS	25114296	25114415	.	+	0	Parent=Os04t0502900-01
Chr04	irgsp1_rep	CDS	25114635	25114853	.	+	0	Parent=Os04t0502900-01
Chr04	irgsp1_rep	three_prime_UTR	25114854	25114900	.	+	.	Parent=Os04t0502900-01
Chr04	irgsp1_rep	three_prime_UTR	25114984	25115169	.	+	.	Parent=Os04t0502900-01
Chr04	irgsp1_rep	mRNA	25111513	25115175	.	+	.	ID=Os04t0502900-02;Name=Os04t0502900-02;Locus_id=Os04g0502900;CGSNL Gene Symbol=MICU1;CGSNL Gene Name=MITOCHONDRIAL CALCIUM UPTAKE 1;Oryzabase Gene Symbol Synonym(s)=OsMICU1;Oryzabase Gene Name Synonym(s)=calcium uptake protein MICU1%2C mitochondrial calcium uptake 1;Note=Similar to OSIGBa0112M24.3 protein.;Transcript_evidence=AK059708 (DDBJ%2C Best hit);ORF_evidence=Q01I54 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249);NIAS_FLcDNA=001-032-E06;Oryzabase=23088;TENOR=Os04t0502900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	25111513	25111538	.	+	.	Parent=Os04t0502900-02
Chr04	irgsp1_rep	five_prime_UTR	25112072	25112227	.	+	.	Parent=Os04t0502900-02
Chr04	irgsp1_rep	CDS	25112228	25112451	.	+	0	Parent=Os04t0502900-02
Chr04	irgsp1_rep	CDS	25112699	25112786	.	+	1	Parent=Os04t0502900-02
Chr04	irgsp1_rep	three_prime_UTR	25112787	25113576	.	+	.	Parent=Os04t0502900-02
Chr04	irgsp1_rep	three_prime_UTR	25114022	25114198	.	+	.	Parent=Os04t0502900-02
Chr04	irgsp1_rep	three_prime_UTR	25114296	25114415	.	+	.	Parent=Os04t0502900-02
Chr04	irgsp1_rep	three_prime_UTR	25114635	25114900	.	+	.	Parent=Os04t0502900-02
Chr04	irgsp1_rep	three_prime_UTR	25114984	25115175	.	+	.	Parent=Os04t0502900-02
Chr04	irgsp1_rep	mRNA	25118238	25120545	.	-	.	ID=Os04t0503100-01;Name=Os04t0503100-01;Locus_id=Os04g0503100;Note=Conserved hypothetical protein.;Transcript_evidence=AK064722 (DDBJ%2C Best hit);ORF_evidence=Q5ZCQ6 (UniProt);NIAS_FLcDNA=002-118-F06;TENOR=Os04t0503100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	25120460	25120545	.	-	.	Parent=Os04t0503100-01
Chr04	irgsp1_rep	five_prime_UTR	25119127	25119360	.	-	.	Parent=Os04t0503100-01
Chr04	irgsp1_rep	CDS	25118875	25119126	.	-	0	Parent=Os04t0503100-01
Chr04	irgsp1_rep	three_prime_UTR	25118238	25118874	.	-	.	Parent=Os04t0503100-01
Chr04	irgsp1_rep	mRNA	25121049	25122693	.	-	.	ID=Os04t0503200-01;Name=Os04t0503200-01;Locus_id=Os04g0503200;Note=Conserved hypothetical protein.;Transcript_evidence=AK105505 (DDBJ%2C Best hit);ORF_evidence=B8ARB8 (UniProt);NIAS_FLcDNA=001-127-D11;TENOR=Os04t0503200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	25122265	25122693	.	-	.	Parent=Os04t0503200-01
Chr04	irgsp1_rep	CDS	25121926	25122264	.	-	0	Parent=Os04t0503200-01
Chr04	irgsp1_rep	three_prime_UTR	25121904	25121925	.	-	.	Parent=Os04t0503200-01
Chr04	irgsp1_rep	three_prime_UTR	25121428	25121600	.	-	.	Parent=Os04t0503200-01
Chr04	irgsp1_rep	three_prime_UTR	25121049	25121339	.	-	.	Parent=Os04t0503200-01
Chr04	irgsp1_rep	mRNA	25126756	25134361	.	-	.	ID=Os04t0503500-01;Name=Os04t0503500-01;Locus_id=Os04g0503500;Oryzabase Gene Name Synonym(s)="Leucine-rich repeat%2C cysteine-containing subtype-containing protein";Note=Leucine-rich repeat%2C cysteine-containing subtype containing protein.;Transcript_evidence=AK318600 (DDBJ%2C Best hit),AK099404 (DDBJ%2C Best hit);ORF_evidence=Q01I53 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=J100066C21,J013001H05;Oryzabase=22041;TENOR=Os04t0503500-01
Chr04	irgsp1_rep	five_prime_UTR	25134195	25134361	.	-	.	Parent=Os04t0503500-01
Chr04	irgsp1_rep	five_prime_UTR	25133540	25133691	.	-	.	Parent=Os04t0503500-01
Chr04	irgsp1_rep	CDS	25133333	25133539	.	-	0	Parent=Os04t0503500-01
Chr04	irgsp1_rep	CDS	25133131	25133259	.	-	0	Parent=Os04t0503500-01
Chr04	irgsp1_rep	CDS	25132368	25132575	.	-	0	Parent=Os04t0503500-01
Chr04	irgsp1_rep	CDS	25132094	25132240	.	-	2	Parent=Os04t0503500-01
Chr04	irgsp1_rep	CDS	25131744	25131818	.	-	2	Parent=Os04t0503500-01
Chr04	irgsp1_rep	CDS	25131580	25131651	.	-	2	Parent=Os04t0503500-01
Chr04	irgsp1_rep	CDS	25131339	25131410	.	-	2	Parent=Os04t0503500-01
Chr04	irgsp1_rep	CDS	25130051	25130122	.	-	2	Parent=Os04t0503500-01
Chr04	irgsp1_rep	CDS	25129650	25129721	.	-	2	Parent=Os04t0503500-01
Chr04	irgsp1_rep	CDS	25129114	25129185	.	-	2	Parent=Os04t0503500-01
Chr04	irgsp1_rep	CDS	25128562	25128633	.	-	2	Parent=Os04t0503500-01
Chr04	irgsp1_rep	CDS	25128278	25128421	.	-	2	Parent=Os04t0503500-01
Chr04	irgsp1_rep	CDS	25127849	25127920	.	-	2	Parent=Os04t0503500-01
Chr04	irgsp1_rep	CDS	25127341	25127487	.	-	2	Parent=Os04t0503500-01
Chr04	irgsp1_rep	CDS	25127075	25127259	.	-	2	Parent=Os04t0503500-01
Chr04	irgsp1_rep	three_prime_UTR	25126756	25127074	.	-	.	Parent=Os04t0503500-01
Chr04	irgsp1_rep	mRNA	25126761	25134348	.	-	.	ID=Os04t0503500-02;Name=Os04t0503500-02;Locus_id=Os04g0503500;Oryzabase Gene Name Synonym(s)="Leucine-rich repeat%2C cysteine-containing subtype-containing protein";Note=Leucine-rich repeat%2C cysteine-containing subtype containing protein.;Transcript_evidence=AK101695 (DDBJ%2C Best hit);ORF_evidence=Q01I53 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=J033060B12;Oryzabase=22041;Expression=AK101695;TENOR=Os04t0503500-02;KEGG=Os04t0503500-02
Chr04	irgsp1_rep	five_prime_UTR	25134297	25134348	.	-	.	Parent=Os04t0503500-02
Chr04	irgsp1_rep	five_prime_UTR	25133540	25133691	.	-	.	Parent=Os04t0503500-02
Chr04	irgsp1_rep	CDS	25133333	25133539	.	-	0	Parent=Os04t0503500-02
Chr04	irgsp1_rep	CDS	25133131	25133259	.	-	0	Parent=Os04t0503500-02
Chr04	irgsp1_rep	CDS	25132368	25132575	.	-	0	Parent=Os04t0503500-02
Chr04	irgsp1_rep	CDS	25132094	25132240	.	-	2	Parent=Os04t0503500-02
Chr04	irgsp1_rep	CDS	25131744	25131818	.	-	2	Parent=Os04t0503500-02
Chr04	irgsp1_rep	CDS	25131580	25131651	.	-	2	Parent=Os04t0503500-02
Chr04	irgsp1_rep	CDS	25131339	25131410	.	-	2	Parent=Os04t0503500-02
Chr04	irgsp1_rep	CDS	25130051	25130122	.	-	2	Parent=Os04t0503500-02
Chr04	irgsp1_rep	CDS	25129650	25129721	.	-	2	Parent=Os04t0503500-02
Chr04	irgsp1_rep	CDS	25129114	25129185	.	-	2	Parent=Os04t0503500-02
Chr04	irgsp1_rep	CDS	25128562	25128633	.	-	2	Parent=Os04t0503500-02
Chr04	irgsp1_rep	CDS	25128278	25128421	.	-	2	Parent=Os04t0503500-02
Chr04	irgsp1_rep	CDS	25127849	25127920	.	-	2	Parent=Os04t0503500-02
Chr04	irgsp1_rep	CDS	25127341	25127487	.	-	2	Parent=Os04t0503500-02
Chr04	irgsp1_rep	CDS	25127075	25127259	.	-	2	Parent=Os04t0503500-02
Chr04	irgsp1_rep	three_prime_UTR	25126761	25127074	.	-	.	Parent=Os04t0503500-02
Chr04	irgsp1_rep	mRNA	25126805	25133694	.	+	.	ID=Os04t0503550-00;Name=Os04t0503550-00;Locus_id=Os04g0503550;Note=Hypothetical protein.;Transcript_evidence=tplb0027m05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0503550-00
Chr04	irgsp1_rep	five_prime_UTR	25126805	25127252	.	+	.	Parent=Os04t0503550-00
Chr04	irgsp1_rep	five_prime_UTR	25127335	25127487	.	+	.	Parent=Os04t0503550-00
Chr04	irgsp1_rep	five_prime_UTR	25127849	25127913	.	+	.	Parent=Os04t0503550-00
Chr04	irgsp1_rep	five_prime_UTR	25128271	25128415	.	+	.	Parent=Os04t0503550-00
Chr04	irgsp1_rep	five_prime_UTR	25128551	25128621	.	+	.	Parent=Os04t0503550-00
Chr04	irgsp1_rep	five_prime_UTR	25129106	25129182	.	+	.	Parent=Os04t0503550-00
Chr04	irgsp1_rep	five_prime_UTR	25129641	25129719	.	+	.	Parent=Os04t0503550-00
Chr04	irgsp1_rep	five_prime_UTR	25130049	25130121	.	+	.	Parent=Os04t0503550-00
Chr04	irgsp1_rep	five_prime_UTR	25131338	25131390	.	+	.	Parent=Os04t0503550-00
Chr04	irgsp1_rep	five_prime_UTR	25131557	25131644	.	+	.	Parent=Os04t0503550-00
Chr04	irgsp1_rep	five_prime_UTR	25131737	25131830	.	+	.	Parent=Os04t0503550-00
Chr04	irgsp1_rep	five_prime_UTR	25132110	25132224	.	+	.	Parent=Os04t0503550-00
Chr04	irgsp1_rep	five_prime_UTR	25132348	25132502	.	+	.	Parent=Os04t0503550-00
Chr04	irgsp1_rep	CDS	25132503	25132572	.	+	0	Parent=Os04t0503550-00
Chr04	irgsp1_rep	CDS	25133123	25133279	.	+	2	Parent=Os04t0503550-00
Chr04	irgsp1_rep	CDS	25133355	25133451	.	+	1	Parent=Os04t0503550-00
Chr04	irgsp1_rep	three_prime_UTR	25133452	25133694	.	+	.	Parent=Os04t0503550-00
Chr04	irgsp1_rep	mRNA	25140210	25145151	.	+	.	ID=Os04t0503600-01;Name=Os04t0503600-01;Locus_id=Os04g0503600;CGSNL Gene Symbol=RLCK153;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 153;Oryzabase Gene Symbol Synonym(s)=OsRLCK153;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 153;Note=Similar to OSIGBa0112M24.5 protein.;Transcript_evidence=AK068552 (DDBJ%2C Best hit);ORF_evidence=Q01I52 (UniProt);GO=Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J013156I11;Oryzabase=18856;TENOR=Os04t0503600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	25140210	25140855	.	+	.	Parent=Os04t0503600-01
Chr04	irgsp1_rep	five_prime_UTR	25141867	25142005	.	+	.	Parent=Os04t0503600-01
Chr04	irgsp1_rep	CDS	25142006	25142102	.	+	0	Parent=Os04t0503600-01
Chr04	irgsp1_rep	CDS	25142236	25142618	.	+	2	Parent=Os04t0503600-01
Chr04	irgsp1_rep	three_prime_UTR	25142619	25143073	.	+	.	Parent=Os04t0503600-01
Chr04	irgsp1_rep	three_prime_UTR	25143148	25143995	.	+	.	Parent=Os04t0503600-01
Chr04	irgsp1_rep	three_prime_UTR	25144430	25145151	.	+	.	Parent=Os04t0503600-01
Chr04	irgsp1_rep	mRNA	25145919	25149607	.	-	.	ID=Os04t0503700-01;Name=Os04t0503700-01;Locus_id=Os04g0503700;Note=Alpha-1%2C 2 glucosyltransferase Alg10 domain containing protein.;Transcript_evidence=AK063355 (DDBJ%2C Best hit);ORF_evidence=Q7F8Z1 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=Glycosyltransferase%2C ALG10 (IPR007006),Alpha-1%2C 2 glucosyltransferase Alg10 (IPR016900);NIAS_FLcDNA=001-114-C05;Expression=AK063355;TENOR=Os04t0503700-01;KEGG=Os04t0503700-01 (EC:2.4.1.-)
Chr04	irgsp1_rep	five_prime_UTR	25149456	25149607	.	-	.	Parent=Os04t0503700-01
Chr04	irgsp1_rep	CDS	25149327	25149455	.	-	0	Parent=Os04t0503700-01
Chr04	irgsp1_rep	CDS	25148700	25148722	.	-	0	Parent=Os04t0503700-01
Chr04	irgsp1_rep	CDS	25148289	25148622	.	-	1	Parent=Os04t0503700-01
Chr04	irgsp1_rep	CDS	25147694	25147955	.	-	0	Parent=Os04t0503700-01
Chr04	irgsp1_rep	CDS	25147223	25147360	.	-	2	Parent=Os04t0503700-01
Chr04	irgsp1_rep	CDS	25146914	25147118	.	-	2	Parent=Os04t0503700-01
Chr04	irgsp1_rep	CDS	25146466	25146608	.	-	1	Parent=Os04t0503700-01
Chr04	irgsp1_rep	CDS	25146114	25146373	.	-	2	Parent=Os04t0503700-01
Chr04	irgsp1_rep	three_prime_UTR	25145919	25146113	.	-	.	Parent=Os04t0503700-01
Chr04	irgsp1_rep	mRNA	25146527	25149592	.	-	.	ID=Os04t0503700-02;Name=Os04t0503700-02;Locus_id=Os04g0503700;Note=Similar to DIE2/ALG10 family.;Transcript_evidence=AK099738 (DDBJ%2C Best hit);ORF_evidence=NP_195861.2 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=Glycosyltransferase%2C ALG10 (IPR007006);NIAS_FLcDNA=J013090L01;Expression=AK099738;TENOR=Os04t0503700-02;KEGG=Os04t0503700-02 (EC:2.4.1.-)
Chr04	irgsp1_rep	five_prime_UTR	25149374	25149592	.	-	.	Parent=Os04t0503700-02
Chr04	irgsp1_rep	CDS	25149284	25149373	.	-	0	Parent=Os04t0503700-02
Chr04	irgsp1_rep	CDS	25148700	25148788	.	-	0	Parent=Os04t0503700-02
Chr04	irgsp1_rep	CDS	25148289	25148622	.	-	1	Parent=Os04t0503700-02
Chr04	irgsp1_rep	CDS	25147694	25147955	.	-	0	Parent=Os04t0503700-02
Chr04	irgsp1_rep	CDS	25147223	25147360	.	-	2	Parent=Os04t0503700-02
Chr04	irgsp1_rep	CDS	25146914	25147118	.	-	2	Parent=Os04t0503700-02
Chr04	irgsp1_rep	CDS	25146527	25146608	.	-	1	Parent=Os04t0503700-02
Chr04	irgsp1_rep	mRNA	25149777	25152160	.	+	.	ID=Os04t0503800-01;Name=Os04t0503800-01;Locus_id=Os04g0503800;Note=Similar to Trafficking protein particle complex protein 2 (Sedlin) (MBP-1 interacting protein-2A) (MIP-2A).;Transcript_evidence=AK121895 (DDBJ%2C Best hit);ORF_evidence=B6STC6 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888),Cellular Component: intracellular (GO:0005622);InterPro=Sedlin (IPR006722),Longin-like (IPR011012);NIAS_FLcDNA=J033105D14;Expression=AK121895;TENOR=Os04t0503800-01;KEGG=Os04t0503800-01
Chr04	irgsp1_rep	five_prime_UTR	25149777	25149870	.	+	.	Parent=Os04t0503800-01
Chr04	irgsp1_rep	five_prime_UTR	25150328	25150913	.	+	.	Parent=Os04t0503800-01
Chr04	irgsp1_rep	CDS	25150914	25151026	.	+	0	Parent=Os04t0503800-01
Chr04	irgsp1_rep	CDS	25151193	25151253	.	+	1	Parent=Os04t0503800-01
Chr04	irgsp1_rep	CDS	25151359	25151445	.	+	0	Parent=Os04t0503800-01
Chr04	irgsp1_rep	CDS	25151743	25151835	.	+	0	Parent=Os04t0503800-01
Chr04	irgsp1_rep	three_prime_UTR	25151836	25152160	.	+	.	Parent=Os04t0503800-01
Chr04	irgsp1_rep	mRNA	25165929	25170704	.	+	.	ID=Os04t0504000-01;Name=Os04t0504000-01;Locus_id=Os04g0504000;CGSNL Gene Symbol=APT2;CGSNL Gene Name=ADENINE PHOSPHORIBOSYL TRANSFERASE 2;Oryzabase Gene Symbol Synonym(s)=OsAPT2%2C APRT;Oryzabase Gene Name Synonym(s)=adenine phosphoribosyl transferase%2C adenine phosphoribosyltransferase;Note=Similar to Adenine phosphoribosyltransferase form 2.;Transcript_evidence=AK121982 (DDBJ%2C Best hit);ORF_evidence=Q84P57 (UniProt);GO=Biological Process: nucleoside metabolic process (GO:0009116);InterPro=Phosphoribosyltransferase (IPR000836);NIAS_FLcDNA=J033108N02;Oryzabase=6088;Expression=AK121982;TENOR=Os04t0504000-01;KEGG=Os04t0504000-01 (EC:2.4.2.7)
Chr04	irgsp1_rep	five_prime_UTR	25165929	25166071	.	+	.	Parent=Os04t0504000-01
Chr04	irgsp1_rep	CDS	25166072	25166240	.	+	0	Parent=Os04t0504000-01
Chr04	irgsp1_rep	CDS	25166365	25166475	.	+	2	Parent=Os04t0504000-01
Chr04	irgsp1_rep	CDS	25168318	25168410	.	+	2	Parent=Os04t0504000-01
Chr04	irgsp1_rep	CDS	25168833	25168990	.	+	2	Parent=Os04t0504000-01
Chr04	irgsp1_rep	three_prime_UTR	25168991	25169890	.	+	.	Parent=Os04t0504000-01
Chr04	irgsp1_rep	three_prime_UTR	25169987	25170061	.	+	.	Parent=Os04t0504000-01
Chr04	irgsp1_rep	three_prime_UTR	25170402	25170704	.	+	.	Parent=Os04t0504000-01
Chr04	irgsp1_rep	mRNA	25174782	25175746	.	-	.	ID=Os04t0504200-01;Name=Os04t0504200-01;Locus_id=Os04g0504200;Note=Conserved hypothetical protein.;Transcript_evidence=AK110863 (DDBJ%2C Best hit);ORF_evidence=B9FG03 (UniProt);NIAS_FLcDNA=002-172-D09;Expression=AK110863;TENOR=Os04t0504200-01;KEGG=Os04t0504200-01
Chr04	irgsp1_rep	five_prime_UTR	25175687	25175746	.	-	.	Parent=Os04t0504200-01
Chr04	irgsp1_rep	CDS	25175234	25175686	.	-	0	Parent=Os04t0504200-01
Chr04	irgsp1_rep	CDS	25175036	25175143	.	-	0	Parent=Os04t0504200-01
Chr04	irgsp1_rep	three_prime_UTR	25174782	25175035	.	-	.	Parent=Os04t0504200-01
Chr04	irgsp1_rep	mRNA	25182303	25186566	.	+	.	ID=Os04t0504500-01;Name=Os04t0504500-01;Locus_id=Os04g0504500;CGSNL Gene Symbol=PLT4;CGSNL Gene Name=PLETHORA 4;Oryzabase Gene Symbol Synonym(s)=OsPLT4%2C AP2/EREBP#037%2C AP2/EREBP37%2C BBM4%2C OsBBM4;Oryzabase Gene Name Synonym(s)=Plethora 4%2C APETALA2/ethylene-responsive element binding protein 37%2C BABY BOOM4%2C BABY BOOM 4;Note=Similar to protein BABY BOOM 1.;Transcript_evidence=AK241272 (DDBJ%2C Best hit),AK287726 (DDBJ%2C Best hit);ORF_evidence=NP_001147535.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J065132I19,J065138E17;Oryzabase=10467;TENOR=Os04t0504500-01;KEGG=Os04t0504500-01
Chr04	irgsp1_rep	five_prime_UTR	25182303	25182491	.	+	.	Parent=Os04t0504500-01
Chr04	irgsp1_rep	CDS	25182492	25182720	.	+	0	Parent=Os04t0504500-01
Chr04	irgsp1_rep	CDS	25182815	25183439	.	+	2	Parent=Os04t0504500-01
Chr04	irgsp1_rep	CDS	25184068	25184150	.	+	1	Parent=Os04t0504500-01
Chr04	irgsp1_rep	CDS	25184328	25184336	.	+	2	Parent=Os04t0504500-01
Chr04	irgsp1_rep	CDS	25184468	25184556	.	+	2	Parent=Os04t0504500-01
Chr04	irgsp1_rep	CDS	25184676	25184749	.	+	0	Parent=Os04t0504500-01
Chr04	irgsp1_rep	CDS	25184871	25184921	.	+	1	Parent=Os04t0504500-01
Chr04	irgsp1_rep	CDS	25185065	25185141	.	+	1	Parent=Os04t0504500-01
Chr04	irgsp1_rep	CDS	25185626	25186365	.	+	2	Parent=Os04t0504500-01
Chr04	irgsp1_rep	three_prime_UTR	25186366	25186566	.	+	.	Parent=Os04t0504500-01
Chr04	irgsp1_rep	mRNA	25185620	25186166	.	-	.	ID=Os04t0504551-00;Name=Os04t0504551-00;Locus_id=Os04g0504551;Note=Non-protein coding transcript.;Transcript_evidence=EU949353 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0504551-00
Chr04	irgsp1_rep	exon	25185620	25186166	.	-	.	Parent=Os04t0504551-00
Chr04	irgsp1_rep	mRNA	25187851	25191496	.	+	.	ID=Os04t0504600-01;Name=Os04t0504600-01;Locus_id=Os04g0504600;Note=Pyruvate/Phosphoenolpyruvate kinase%2C catalytic core domain containing protein.;Transcript_evidence=AK241443 (DDBJ%2C Best hit);ORF_evidence=A2Q4X2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Isocitrate lyase/phosphorylmutase (IPR000918),Pyruvate/Phosphoenolpyruvate kinase (IPR015813);NIAS_FLcDNA=J065162K24;TENOR=Os04t0504600-01;KEGG=Os04t0504600-01
Chr04	irgsp1_rep	five_prime_UTR	25187851	25187880	.	+	.	Parent=Os04t0504600-01
Chr04	irgsp1_rep	CDS	25187881	25188241	.	+	0	Parent=Os04t0504600-01
Chr04	irgsp1_rep	CDS	25188713	25188924	.	+	2	Parent=Os04t0504600-01
Chr04	irgsp1_rep	CDS	25189190	25189471	.	+	0	Parent=Os04t0504600-01
Chr04	irgsp1_rep	CDS	25189564	25189686	.	+	0	Parent=Os04t0504600-01
Chr04	irgsp1_rep	CDS	25190281	25190434	.	+	0	Parent=Os04t0504600-01
Chr04	irgsp1_rep	CDS	25190524	25190735	.	+	2	Parent=Os04t0504600-01
Chr04	irgsp1_rep	CDS	25190946	25190982	.	+	0	Parent=Os04t0504600-01
Chr04	irgsp1_rep	CDS	25191064	25191194	.	+	2	Parent=Os04t0504600-01
Chr04	irgsp1_rep	three_prime_UTR	25191195	25191496	.	+	.	Parent=Os04t0504600-01
Chr04	irgsp1_rep	mRNA	25188033	25190406	.	-	.	ID=Os04t0504650-00;Name=Os04t0504650-00;Locus_id=Os04g0504650;Note=Non-protein coding transcript.;Transcript_evidence=BT016201 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0504650-00
Chr04	irgsp1_rep	exon	25190275	25190406	.	-	.	Parent=Os04t0504650-00
Chr04	irgsp1_rep	exon	25189570	25189680	.	-	.	Parent=Os04t0504650-00
Chr04	irgsp1_rep	exon	25189188	25189478	.	-	.	Parent=Os04t0504650-00
Chr04	irgsp1_rep	exon	25188695	25188922	.	-	.	Parent=Os04t0504650-00
Chr04	irgsp1_rep	exon	25188033	25188230	.	-	.	Parent=Os04t0504650-00
Chr04	irgsp1_rep	mRNA	25191478	25192933	.	-	.	ID=Os04t0504700-01;Name=Os04t0504700-01;Locus_id=Os04g0504700;Note=Conserved hypothetical protein.;Transcript_evidence=AK068596 (DDBJ%2C Best hit);ORF_evidence=Q7X922 (UniProt);NIAS_FLcDNA=J013154C07;TENOR=Os04t0504700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	25192933	25192933	.	-	.	Parent=Os04t0504700-01
Chr04	irgsp1_rep	CDS	25192882	25192932	.	-	0	Parent=Os04t0504700-01
Chr04	irgsp1_rep	CDS	25192747	25192809	.	-	0	Parent=Os04t0504700-01
Chr04	irgsp1_rep	CDS	25191717	25192637	.	-	0	Parent=Os04t0504700-01
Chr04	irgsp1_rep	three_prime_UTR	25191478	25191716	.	-	.	Parent=Os04t0504700-01
Chr04	irgsp1_rep	mRNA	25194829	25201219	.	-	.	ID=Os04t0504800-01;Name=Os04t0504800-01;Locus_id=Os04g0504800;Oryzabase Gene Symbol Synonym(s)=OsPABPC3%2C PABPC3;Note=Similar to Poly(A)-binding protein.;Transcript_evidence=AK067210 (DDBJ%2C Best hit);ORF_evidence=B6U4M0 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723);InterPro=RNA recognition motif domain (IPR000504),Polyadenylate-binding protein/Hyperplastic disc protein (IPR002004),Polyadenylate binding protein%2C human types 1%2C 2%2C 3%2C 4 (IPR006515),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013096J03;Oryzabase=19983;Expression=AK067210;TENOR=Os04t0504800-01;KEGG=Os04t0504800-01
Chr04	irgsp1_rep	five_prime_UTR	25200944	25201219	.	-	.	Parent=Os04t0504800-01
Chr04	irgsp1_rep	CDS	25200667	25200943	.	-	0	Parent=Os04t0504800-01
Chr04	irgsp1_rep	CDS	25198980	25199098	.	-	2	Parent=Os04t0504800-01
Chr04	irgsp1_rep	CDS	25198222	25198878	.	-	0	Parent=Os04t0504800-01
Chr04	irgsp1_rep	CDS	25198062	25198139	.	-	0	Parent=Os04t0504800-01
Chr04	irgsp1_rep	CDS	25197901	25197990	.	-	0	Parent=Os04t0504800-01
Chr04	irgsp1_rep	CDS	25197054	25197188	.	-	0	Parent=Os04t0504800-01
Chr04	irgsp1_rep	CDS	25196350	25196526	.	-	0	Parent=Os04t0504800-01
Chr04	irgsp1_rep	CDS	25195759	25195959	.	-	0	Parent=Os04t0504800-01
Chr04	irgsp1_rep	CDS	25195118	25195363	.	-	0	Parent=Os04t0504800-01
Chr04	irgsp1_rep	three_prime_UTR	25194829	25195117	.	-	.	Parent=Os04t0504800-01
Chr04	irgsp1_rep	mRNA	25194028	25197965	.	-	.	ID=Os04t0504800-02;Name=Os04t0504800-02;Locus_id=Os04g0504800;Oryzabase Gene Symbol Synonym(s)=OsPABPC3%2C PABPC3;Note=Similar to polyadenylate-binding protein 2.;Transcript_evidence=AK105555 (DDBJ%2C Best hit);ORF_evidence=B6U4M0 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=Polyadenylate-binding protein/Hyperplastic disc protein (IPR002004);NIAS_FLcDNA=001-128-B03;Oryzabase=19983;Expression=AK105555;TENOR=Os04t0504800-02;KEGG=Os04t0504800-02
Chr04	irgsp1_rep	five_prime_UTR	25197964	25197965	.	-	.	Parent=Os04t0504800-02
Chr04	irgsp1_rep	CDS	25197901	25197963	.	-	0	Parent=Os04t0504800-02
Chr04	irgsp1_rep	CDS	25197054	25197188	.	-	0	Parent=Os04t0504800-02
Chr04	irgsp1_rep	CDS	25196350	25196526	.	-	0	Parent=Os04t0504800-02
Chr04	irgsp1_rep	CDS	25195759	25195959	.	-	0	Parent=Os04t0504800-02
Chr04	irgsp1_rep	CDS	25195118	25195363	.	-	0	Parent=Os04t0504800-02
Chr04	irgsp1_rep	three_prime_UTR	25194949	25195117	.	-	.	Parent=Os04t0504800-02
Chr04	irgsp1_rep	three_prime_UTR	25194028	25194681	.	-	.	Parent=Os04t0504800-02
Chr04	irgsp1_rep	mRNA	25194842	25197190	.	-	.	ID=Os04t0504800-03;Name=Os04t0504800-03;Locus_id=Os04g0504800;Oryzabase Gene Symbol Synonym(s)=OsPABPC3%2C PABPC3;Note=Similar to polyadenylate-binding protein 2.;Transcript_evidence=AK104208 (DDBJ%2C Best hit);ORF_evidence=B6U4M0 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=Polyadenylate-binding protein/Hyperplastic disc protein (IPR002004);NIAS_FLcDNA=006-305-B11;Oryzabase=19983;Expression=AK104208;TENOR=Os04t0504800-03;KEGG=Os04t0504800-03
Chr04	irgsp1_rep	five_prime_UTR	25197189	25197190	.	-	.	Parent=Os04t0504800-03
Chr04	irgsp1_rep	CDS	25197054	25197188	.	-	0	Parent=Os04t0504800-03
Chr04	irgsp1_rep	CDS	25196350	25196526	.	-	0	Parent=Os04t0504800-03
Chr04	irgsp1_rep	CDS	25195759	25195959	.	-	0	Parent=Os04t0504800-03
Chr04	irgsp1_rep	CDS	25195118	25195363	.	-	0	Parent=Os04t0504800-03
Chr04	irgsp1_rep	three_prime_UTR	25194842	25195117	.	-	.	Parent=Os04t0504800-03
Chr04	irgsp1_rep	mRNA	25196452	25201008	.	+	.	ID=Os04t0504901-01;Name=Os04t0504901-01;Locus_id=Os04g0504901;Note=Hypothetical gene.;Transcript_evidence=AK064269 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-105-E03;TENOR=Os04t0504901-01
Chr04	irgsp1_rep	five_prime_UTR	25196452	25196526	.	+	.	Parent=Os04t0504901-01
Chr04	irgsp1_rep	five_prime_UTR	25197054	25197188	.	+	.	Parent=Os04t0504901-01
Chr04	irgsp1_rep	five_prime_UTR	25197901	25197990	.	+	.	Parent=Os04t0504901-01
Chr04	irgsp1_rep	five_prime_UTR	25198062	25198139	.	+	.	Parent=Os04t0504901-01
Chr04	irgsp1_rep	five_prime_UTR	25198222	25198878	.	+	.	Parent=Os04t0504901-01
Chr04	irgsp1_rep	five_prime_UTR	25198980	25199098	.	+	.	Parent=Os04t0504901-01
Chr04	irgsp1_rep	five_prime_UTR	25200667	25200722	.	+	.	Parent=Os04t0504901-01
Chr04	irgsp1_rep	CDS	25200723	25201008	.	+	0	Parent=Os04t0504901-01
Chr04	irgsp1_rep	mRNA	25207809	25213914	.	+	.	ID=Os04t0505000-01;Name=Os04t0505000-01;Locus_id=Os04g0505000;Note=Protein of unknown function DUF869%2C plant family protein.;Transcript_evidence=AK060812 (DDBJ%2C Best hit);ORF_evidence=Q7X8B6 (UniProt);InterPro=Protein of unknown function DUF869%2C plant (IPR008587);NIAS_FLcDNA=001-033-H03;Expression=AK060812;TENOR=Os04t0505000-01;KEGG=Os04t0505000-01
Chr04	irgsp1_rep	five_prime_UTR	25207809	25208031	.	+	.	Parent=Os04t0505000-01
Chr04	irgsp1_rep	five_prime_UTR	25210860	25210904	.	+	.	Parent=Os04t0505000-01
Chr04	irgsp1_rep	CDS	25210905	25212685	.	+	0	Parent=Os04t0505000-01
Chr04	irgsp1_rep	CDS	25212790	25212847	.	+	1	Parent=Os04t0505000-01
Chr04	irgsp1_rep	CDS	25213242	25213658	.	+	0	Parent=Os04t0505000-01
Chr04	irgsp1_rep	three_prime_UTR	25213659	25213914	.	+	.	Parent=Os04t0505000-01
Chr04	irgsp1_rep	mRNA	25207902	25213896	.	-	.	ID=Os04t0505066-01;Name=Os04t0505066-01;Locus_id=Os04g0505066;Note=Hypothetical gene.;Transcript_evidence=AK099205 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013022C17;Expression=AK099205;TENOR=Os04t0505066-01;KEGG=Os04t0505066-01
Chr04	irgsp1_rep	five_prime_UTR	25213640	25213896	.	-	.	Parent=Os04t0505066-01
Chr04	irgsp1_rep	CDS	25213394	25213639	.	-	0	Parent=Os04t0505066-01
Chr04	irgsp1_rep	three_prime_UTR	25213242	25213393	.	-	.	Parent=Os04t0505066-01
Chr04	irgsp1_rep	three_prime_UTR	25212790	25212847	.	-	.	Parent=Os04t0505066-01
Chr04	irgsp1_rep	three_prime_UTR	25210860	25212685	.	-	.	Parent=Os04t0505066-01
Chr04	irgsp1_rep	three_prime_UTR	25207902	25208031	.	-	.	Parent=Os04t0505066-01
Chr04	irgsp1_rep	mRNA	25217872	25219663	.	+	.	ID=Os04t0505200-01;Name=Os04t0505200-01;Locus_id=Os04g0505200;Note=Similar to Protein binding protein.;Transcript_evidence=AK066703 (DDBJ%2C Best hit);ORF_evidence=B6TA85 (UniProt);NIAS_FLcDNA=J013075O17;Expression=AK066703;TENOR=Os04t0505200-01;KEGG=Os04t0505200-01
Chr04	irgsp1_rep	five_prime_UTR	25217872	25218032	.	+	.	Parent=Os04t0505200-01
Chr04	irgsp1_rep	CDS	25218033	25219397	.	+	0	Parent=Os04t0505200-01
Chr04	irgsp1_rep	three_prime_UTR	25219398	25219663	.	+	.	Parent=Os04t0505200-01
Chr04	irgsp1_rep	mRNA	25217876	25219670	.	+	.	ID=Os04t0505200-02;Name=Os04t0505200-02;Locus_id=Os04g0505200;Note=Leucine-rich repeat%2C plant specific containing protein.;Transcript_evidence=AK061301 (DDBJ%2C Best hit);ORF_evidence=B6TA85 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=006-301-F03;Expression=AK061301;TENOR=Os04t0505200-02;KEGG=Os04t0505200-02
Chr04	irgsp1_rep	five_prime_UTR	25217876	25218032	.	+	.	Parent=Os04t0505200-02
Chr04	irgsp1_rep	CDS	25218033	25218911	.	+	0	Parent=Os04t0505200-02
Chr04	irgsp1_rep	CDS	25219356	25219397	.	+	0	Parent=Os04t0505200-02
Chr04	irgsp1_rep	three_prime_UTR	25219398	25219670	.	+	.	Parent=Os04t0505200-02
Chr04	irgsp1_rep	mRNA	25218005	25219670	.	+	.	ID=Os04t0505200-03;Name=Os04t0505200-03;Locus_id=Os04g0505200;Note=Similar to Protein binding protein.;Transcript_evidence=AK104903 (DDBJ%2C Best hit);ORF_evidence=B6TA85 (UniProt);NIAS_FLcDNA=001-046-F07;Expression=AK104903;TENOR=Os04t0505200-03;KEGG=Os04t0505200-03
Chr04	irgsp1_rep	five_prime_UTR	25218005	25218032	.	+	.	Parent=Os04t0505200-03
Chr04	irgsp1_rep	CDS	25218033	25219397	.	+	0	Parent=Os04t0505200-03
Chr04	irgsp1_rep	three_prime_UTR	25219398	25219670	.	+	.	Parent=Os04t0505200-03
Chr04	irgsp1_rep	mRNA	25232435	25234543	.	-	.	ID=Os04t0505400-01;Name=Os04t0505400-01;Locus_id=Os04g0505400;Note=Protein of unknown function DUF247%2C plant family protein.;Transcript_evidence=AK063930 (DDBJ%2C Best hit);ORF_evidence=Q01J11 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);NIAS_FLcDNA=001-123-D02;Expression=AK063930;TENOR=Os04t0505400-01;KEGG=Os04t0505400-01
Chr04	irgsp1_rep	five_prime_UTR	25234400	25234543	.	-	.	Parent=Os04t0505400-01
Chr04	irgsp1_rep	CDS	25232720	25234399	.	-	0	Parent=Os04t0505400-01
Chr04	irgsp1_rep	three_prime_UTR	25232435	25232719	.	-	.	Parent=Os04t0505400-01
Chr04	irgsp1_rep	mRNA	25232613	25234674	.	+	.	ID=Os04t0505500-01;Name=Os04t0505500-01;Locus_id=Os04g0505500;Note=Hypothetical protein.;Transcript_evidence=AK063370 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-114-E02;Expression=AK063370;TENOR=Os04t0505500-01;KEGG=Os04t0505500-01
Chr04	irgsp1_rep	five_prime_UTR	25232613	25232653	.	+	.	Parent=Os04t0505500-01
Chr04	irgsp1_rep	CDS	25232654	25233463	.	+	0	Parent=Os04t0505500-01
Chr04	irgsp1_rep	three_prime_UTR	25233464	25234674	.	+	.	Parent=Os04t0505500-01
Chr04	irgsp1_rep	mRNA	25232818	25234680	.	+	.	ID=Os04t0505500-02;Name=Os04t0505500-02;Locus_id=Os04g0505500;Note=Hypothetical gene.;Transcript_evidence=AK121493 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033000K17;Expression=AK121493;TENOR=Os04t0505500-02;KEGG=Os04t0505500-02
Chr04	irgsp1_rep	five_prime_UTR	25232818	25233077	.	+	.	Parent=Os04t0505500-02
Chr04	irgsp1_rep	CDS	25233078	25233839	.	+	0	Parent=Os04t0505500-02
Chr04	irgsp1_rep	three_prime_UTR	25233840	25234680	.	+	.	Parent=Os04t0505500-02
Chr04	irgsp1_rep	mRNA	25244494	25245978	.	-	.	ID=Os04t0505700-01;Name=Os04t0505700-01;Locus_id=Os04g0505700;Oryzabase Gene Symbol Synonym(s)=OsFbox227%2C Os_F0286;Oryzabase Gene Name Synonym(s)=F-box protein 227;Note=Leucine-rich repeat%2C cysteine-containing subtype containing protein.;Transcript_evidence=AK071138 (DDBJ%2C Best hit);ORF_evidence=Q01J10 (UniProt);NIAS_FLcDNA=J023081C03;Oryzabase=17014;Expression=AK071138;TENOR=Os04t0505700-01;KEGG=Os04t0505700-01
Chr04	irgsp1_rep	five_prime_UTR	25245978	25245978	.	-	.	Parent=Os04t0505700-01
Chr04	irgsp1_rep	CDS	25244730	25245977	.	-	0	Parent=Os04t0505700-01
Chr04	irgsp1_rep	three_prime_UTR	25244494	25244729	.	-	.	Parent=Os04t0505700-01
Chr04	irgsp1_rep	mRNA	25251495	25253149	.	-	.	ID=Os04t0506000-01;Name=Os04t0506000-01;Locus_id=Os04g0506000;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK068040 (DDBJ%2C Best hit);ORF_evidence=Q01J09 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J013130B16;Expression=AK068040;TENOR=Os04t0506000-01;KEGG=Os04t0506000-01
Chr04	irgsp1_rep	five_prime_UTR	25253097	25253149	.	-	.	Parent=Os04t0506000-01
Chr04	irgsp1_rep	CDS	25251639	25253096	.	-	0	Parent=Os04t0506000-01
Chr04	irgsp1_rep	three_prime_UTR	25251495	25251638	.	-	.	Parent=Os04t0506000-01
Chr04	irgsp1_rep	mRNA	25253913	25254615	.	-	.	ID=Os04t0506100-01;Name=Os04t0506100-01;Locus_id=Os04g0506100;Note=Similar to Receptor-like protein kinase.;Transcript_evidence=AK059053 (DDBJ%2C Best hit);ORF_evidence=NP_173166.2 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-021-E12;Expression=AK059053;TENOR=Os04t0506100-01;KEGG=Os04t0506100-01 (EC:2.7.11.1)
Chr04	irgsp1_rep	five_prime_UTR	25254615	25254615	.	-	.	Parent=Os04t0506100-01
Chr04	irgsp1_rep	CDS	25254509	25254614	.	-	0	Parent=Os04t0506100-01
Chr04	irgsp1_rep	CDS	25253955	25254337	.	-	2	Parent=Os04t0506100-01
Chr04	irgsp1_rep	three_prime_UTR	25253913	25253954	.	-	.	Parent=Os04t0506100-01
Chr04	irgsp1_rep	mRNA	25280935	25285098	.	-	.	ID=Os04t0506300-01;Name=Os04t0506300-01;Locus_id=Os04g0506300;Note=TMS membrane protein/tumour differentially expressed protein family protein.;Transcript_evidence=AK063591 (DDBJ%2C Best hit);ORF_evidence=Q01J07 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=TMS membrane protein/tumour differentially expressed protein (IPR005016);NIAS_FLcDNA=001-118-A12;Expression=AK063591;TENOR=Os04t0506300-01;KEGG=Os04t0506300-01
Chr04	irgsp1_rep	five_prime_UTR	25284849	25285098	.	-	.	Parent=Os04t0506300-01
Chr04	irgsp1_rep	CDS	25284677	25284848	.	-	0	Parent=Os04t0506300-01
Chr04	irgsp1_rep	CDS	25284481	25284557	.	-	2	Parent=Os04t0506300-01
Chr04	irgsp1_rep	CDS	25284127	25284286	.	-	0	Parent=Os04t0506300-01
Chr04	irgsp1_rep	CDS	25283679	25283703	.	-	2	Parent=Os04t0506300-01
Chr04	irgsp1_rep	CDS	25283449	25283538	.	-	1	Parent=Os04t0506300-01
Chr04	irgsp1_rep	CDS	25283172	25283343	.	-	1	Parent=Os04t0506300-01
Chr04	irgsp1_rep	CDS	25282371	25282444	.	-	0	Parent=Os04t0506300-01
Chr04	irgsp1_rep	CDS	25282222	25282291	.	-	1	Parent=Os04t0506300-01
Chr04	irgsp1_rep	CDS	25282002	25282073	.	-	0	Parent=Os04t0506300-01
Chr04	irgsp1_rep	CDS	25281634	25281767	.	-	0	Parent=Os04t0506300-01
Chr04	irgsp1_rep	CDS	25281363	25281436	.	-	1	Parent=Os04t0506300-01
Chr04	irgsp1_rep	CDS	25281020	25281114	.	-	2	Parent=Os04t0506300-01
Chr04	irgsp1_rep	three_prime_UTR	25280935	25281019	.	-	.	Parent=Os04t0506300-01
Chr04	irgsp1_rep	mRNA	25297161	25298215	.	-	.	ID=Os04t0506500-00;Name=Os04t0506500-00;Locus_id=Os04g0506500;Note=Hypothetical gene.;Transcript_evidence=AK333795 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0506500-00
Chr04	irgsp1_rep	five_prime_UTR	25297673	25298215	.	-	.	Parent=Os04t0506500-00
Chr04	irgsp1_rep	CDS	25297161	25297672	.	-	0	Parent=Os04t0506500-00
Chr04	irgsp1_rep	mRNA	25297169	25299569	.	+	.	ID=Os04t0506700-00;Name=Os04t0506700-00;Locus_id=Os04g0506700;Oryzabase Gene Symbol Synonym(s)=SRK;Oryzabase Gene Name Synonym(s)=S-locus receptor kinase;Note=Similar to OSIGBa0145C12.7 protein.;Transcript_evidence=tplb0059a02 (Wheat FLcDNA);ORF_evidence=Q01J05 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),S-receptor-like serine/threonine-protein kinase (IPR024171);Oryzabase=23399;TENOR=Os04t0506700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	25297169	25297187	.	+	.	Parent=Os04t0506700-00
Chr04	irgsp1_rep	CDS	25297188	25299569	.	+	0	Parent=Os04t0506700-00
Chr04	irgsp1_rep	mRNA	25307143	25308493	.	+	.	ID=Os04t0506800-01;Name=Os04t0506800-01;Locus_id=Os04g0506800;Note=Glycosyl transferase%2C family 29 protein.;Transcript_evidence=AK070719 (DDBJ%2C Best hit),AK104647 (DDBJ%2C Best hit),AK104762 (DDBJ%2C Best hit);ORF_evidence=Q01IV8 (UniProt);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: integral to Golgi membrane (GO:0030173),Molecular Function: sialyltransferase activity (GO:0008373);InterPro=Glycosyl transferase%2C family 29 (IPR001675);NIAS_FLcDNA=J023058L14,006-310-H03,001-038-H03;TENOR=Os04t0506800-01
Chr04	irgsp1_rep	five_prime_UTR	25307143	25307209	.	+	.	Parent=Os04t0506800-01
Chr04	irgsp1_rep	CDS	25307210	25308364	.	+	0	Parent=Os04t0506800-01
Chr04	irgsp1_rep	three_prime_UTR	25308365	25308493	.	+	.	Parent=Os04t0506800-01
Chr04	irgsp1_rep	mRNA	25314273	25320440	.	-	.	ID=Os04t0506900-01;Name=Os04t0506900-01;Locus_id=Os04g0506900;Note=Similar to OSIGBa0157A06.2 protein.;Transcript_evidence=AK102222 (DDBJ%2C Best hit);ORF_evidence=Q01IV7 (UniProt);InterPro=Protein of unknown function DUF3741 (IPR022212);NIAS_FLcDNA=J033087M03;TENOR=Os04t0506900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	25320305	25320440	.	-	.	Parent=Os04t0506900-01
Chr04	irgsp1_rep	five_prime_UTR	25318400	25318508	.	-	.	Parent=Os04t0506900-01
Chr04	irgsp1_rep	CDS	25318386	25318399	.	-	0	Parent=Os04t0506900-01
Chr04	irgsp1_rep	CDS	25317863	25317953	.	-	1	Parent=Os04t0506900-01
Chr04	irgsp1_rep	CDS	25315899	25317701	.	-	0	Parent=Os04t0506900-01
Chr04	irgsp1_rep	CDS	25315517	25315703	.	-	0	Parent=Os04t0506900-01
Chr04	irgsp1_rep	CDS	25314722	25315431	.	-	2	Parent=Os04t0506900-01
Chr04	irgsp1_rep	three_prime_UTR	25314273	25314721	.	-	.	Parent=Os04t0506900-01
Chr04	irgsp1_rep	mRNA	25314361	25319944	.	-	.	ID=Os04t0506900-02;Name=Os04t0506900-02;Locus_id=Os04g0506900;Note=Similar to OSIGBa0157A06.2 protein.;Transcript_evidence=AK070863 (DDBJ%2C Best hit);ORF_evidence=Q01IV7 (UniProt);InterPro=Protein of unknown function DUF3741 (IPR022212);NIAS_FLcDNA=J023073K07;Expression=AK070863;TENOR=Os04t0506900-02;KEGG=Os04t0506900-02
Chr04	irgsp1_rep	five_prime_UTR	25319586	25319944	.	-	.	Parent=Os04t0506900-02
Chr04	irgsp1_rep	five_prime_UTR	25318429	25318508	.	-	.	Parent=Os04t0506900-02
Chr04	irgsp1_rep	CDS	25318386	25318428	.	-	0	Parent=Os04t0506900-02
Chr04	irgsp1_rep	CDS	25317863	25317939	.	-	2	Parent=Os04t0506900-02
Chr04	irgsp1_rep	CDS	25315899	25317701	.	-	0	Parent=Os04t0506900-02
Chr04	irgsp1_rep	CDS	25315517	25315703	.	-	0	Parent=Os04t0506900-02
Chr04	irgsp1_rep	CDS	25314722	25315431	.	-	2	Parent=Os04t0506900-02
Chr04	irgsp1_rep	three_prime_UTR	25314361	25314721	.	-	.	Parent=Os04t0506900-02
Chr04	irgsp1_rep	mRNA	25323826	25340028	.	-	.	ID=Os04t0507000-01;Name=Os04t0507000-01;Locus_id=Os04g0507000;Oryzabase Gene Name Synonym(s)=MutS homologue;Note=Similar to DNA mismatch repair protein.;Transcript_evidence=AK067042 (DDBJ%2C Best hit);ORF_evidence=Q01IV6 (UniProt);GO=Biological Process: DNA repair (GO:0006281),Biological Process: mismatch repair (GO:0006298),Cellular Component: intracellular (GO:0005622),Molecular Function: nuclease activity (GO:0004518),Molecular Function: ATP binding (GO:0005524),Molecular Function: mismatched DNA binding (GO:0030983);InterPro=Excinuclease ABC%2C C subunit%2C N-terminal (IPR000305),DNA mismatch repair protein MutS%2C C-terminal (IPR000432),DNA mismatch repair protein MutS-like%2C N-terminal (IPR007695),DNA mismatch repair protein MutS%2C N-terminal (IPR016151);NIAS_FLcDNA=J013090K16;Oryzabase=21283;Expression=AK067042;TENOR=Os04t0507000-01;KEGG=Os04t0507000-01
Chr04	irgsp1_rep	five_prime_UTR	25339807	25340028	.	-	.	Parent=Os04t0507000-01
Chr04	irgsp1_rep	CDS	25339685	25339806	.	-	0	Parent=Os04t0507000-01
Chr04	irgsp1_rep	CDS	25337555	25337687	.	-	1	Parent=Os04t0507000-01
Chr04	irgsp1_rep	CDS	25337348	25337445	.	-	0	Parent=Os04t0507000-01
Chr04	irgsp1_rep	CDS	25336794	25336869	.	-	1	Parent=Os04t0507000-01
Chr04	irgsp1_rep	CDS	25336245	25336364	.	-	0	Parent=Os04t0507000-01
Chr04	irgsp1_rep	CDS	25335577	25335624	.	-	0	Parent=Os04t0507000-01
Chr04	irgsp1_rep	CDS	25333461	25333525	.	-	0	Parent=Os04t0507000-01
Chr04	irgsp1_rep	CDS	25333139	25333224	.	-	1	Parent=Os04t0507000-01
Chr04	irgsp1_rep	CDS	25332399	25332563	.	-	2	Parent=Os04t0507000-01
Chr04	irgsp1_rep	CDS	25331836	25331945	.	-	2	Parent=Os04t0507000-01
Chr04	irgsp1_rep	CDS	25331533	25331638	.	-	0	Parent=Os04t0507000-01
Chr04	irgsp1_rep	CDS	25331370	25331445	.	-	2	Parent=Os04t0507000-01
Chr04	irgsp1_rep	CDS	25331175	25331233	.	-	1	Parent=Os04t0507000-01
Chr04	irgsp1_rep	CDS	25329178	25329245	.	-	2	Parent=Os04t0507000-01
Chr04	irgsp1_rep	CDS	25328387	25328560	.	-	0	Parent=Os04t0507000-01
Chr04	irgsp1_rep	CDS	25328101	25328307	.	-	0	Parent=Os04t0507000-01
Chr04	irgsp1_rep	CDS	25327570	25327826	.	-	0	Parent=Os04t0507000-01
Chr04	irgsp1_rep	CDS	25327098	25327241	.	-	1	Parent=Os04t0507000-01
Chr04	irgsp1_rep	CDS	25326444	25326495	.	-	1	Parent=Os04t0507000-01
Chr04	irgsp1_rep	CDS	25325392	25325691	.	-	0	Parent=Os04t0507000-01
Chr04	irgsp1_rep	CDS	25324231	25324938	.	-	0	Parent=Os04t0507000-01
Chr04	irgsp1_rep	CDS	25323919	25324143	.	-	0	Parent=Os04t0507000-01
Chr04	irgsp1_rep	three_prime_UTR	25323826	25323918	.	-	.	Parent=Os04t0507000-01
Chr04	irgsp1_rep	mRNA	25329965	25330594	.	-	.	ID=Os04t0507016-00;Name=Os04t0507016-00;Locus_id=Os04g0507016;Note=Conserved hypothetical protein.;Transcript_evidence=AK374463 (DDBJ);ORF_evidence=Q7XNH1 (UniProt);TENOR=Os04t0507016-00
Chr04	irgsp1_rep	CDS	25329965	25330594	.	-	0	Parent=Os04t0507016-00
Chr04	irgsp1_rep	mRNA	25334748	25335222	.	-	.	ID=Os04t0507032-00;Name=Os04t0507032-00;Locus_id=Os04g0507032;Note=Hypothetical protein.;Transcript_evidence=tplb0031c08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0507032-00
Chr04	irgsp1_rep	CDS	25334748	25335222	.	-	0	Parent=Os04t0507032-00
Chr04	irgsp1_rep	mRNA	25340377	25341989	.	-	.	ID=Os04t0507100-01;Name=Os04t0507100-01;Locus_id=Os04g0507100;Note=Conserved hypothetical protein.;Transcript_evidence=AK066402 (DDBJ%2C Best hit);ORF_evidence=B8ARR1 (UniProt);NIAS_FLcDNA=J013060A10;TENOR=Os04t0507100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	25341977	25341989	.	-	.	Parent=Os04t0507100-01
Chr04	irgsp1_rep	CDS	25341724	25341976	.	-	0	Parent=Os04t0507100-01
Chr04	irgsp1_rep	CDS	25341579	25341601	.	-	2	Parent=Os04t0507100-01
Chr04	irgsp1_rep	three_prime_UTR	25341005	25341578	.	-	.	Parent=Os04t0507100-01
Chr04	irgsp1_rep	three_prime_UTR	25340841	25340889	.	-	.	Parent=Os04t0507100-01
Chr04	irgsp1_rep	three_prime_UTR	25340377	25340751	.	-	.	Parent=Os04t0507100-01
Chr04	irgsp1_rep	mRNA	25340375	25341971	.	-	.	ID=Os04t0507100-02;Name=Os04t0507100-02;Locus_id=Os04g0507100;Note=Similar to cDNA clone:J013060A10%2C full insert sequence.;Transcript_evidence=AK061905 (DDBJ%2C Best hit);ORF_evidence=B7EC55 (UniProt);InterPro=Protein of unknown function DUF3493 (IPR021883);NIAS_FLcDNA=001-041-H09;Expression=AK061905;TENOR=Os04t0507100-02;KEGG=Os04t0507100-02
Chr04	irgsp1_rep	five_prime_UTR	25341922	25341971	.	-	.	Parent=Os04t0507100-02
Chr04	irgsp1_rep	CDS	25341719	25341921	.	-	0	Parent=Os04t0507100-02
Chr04	irgsp1_rep	CDS	25341005	25341601	.	-	1	Parent=Os04t0507100-02
Chr04	irgsp1_rep	CDS	25340839	25340889	.	-	1	Parent=Os04t0507100-02
Chr04	irgsp1_rep	CDS	25340610	25340751	.	-	1	Parent=Os04t0507100-02
Chr04	irgsp1_rep	three_prime_UTR	25340375	25340609	.	-	.	Parent=Os04t0507100-02
Chr04	irgsp1_rep	mRNA	25346878	25348347	.	-	.	ID=Os04t0507400-00;Name=Os04t0507400-00;Locus_id=Os04g0507400;Note=Similar to OSIGBa0157A06.5 protein.;Transcript_evidence=EU957725 (DDBJ);ORF_evidence=Q01IV4 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os04t0507400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	25348320	25348347	.	-	.	Parent=Os04t0507400-00
Chr04	irgsp1_rep	CDS	25347885	25348319	.	-	0	Parent=Os04t0507400-00
Chr04	irgsp1_rep	CDS	25346878	25347792	.	-	0	Parent=Os04t0507400-00
Chr04	irgsp1_rep	mRNA	25347262	25348307	.	+	.	ID=Os04t0507450-00;Name=Os04t0507450-00;Locus_id=Os04g0507450;Note=Hypothetical gene.;Transcript_evidence=BT035701 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0507450-00;KEGG=Os04t0507450-00
Chr04	irgsp1_rep	CDS	25347262	25347894	.	+	0	Parent=Os04t0507450-00
Chr04	irgsp1_rep	three_prime_UTR	25347895	25348307	.	+	.	Parent=Os04t0507450-00
Chr04	irgsp1_rep	mRNA	25349753	25361082	.	-	.	ID=Os04t0507500-01;Name=Os04t0507500-01;Locus_id=Os04g0507500;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK067306 (DDBJ%2C Best hit);ORF_evidence=Q01IV2 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=HEAT (IPR000357),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),HEAT%2C type 2 (IPR021133),CLASP N-terminal domain (IPR024395);NIAS_FLcDNA=J013100C22;Expression=AK067306;TENOR=Os04t0507500-01;KEGG=Os04t0507500-01
Chr04	irgsp1_rep	five_prime_UTR	25360934	25361082	.	-	.	Parent=Os04t0507500-01
Chr04	irgsp1_rep	CDS	25360595	25360933	.	-	0	Parent=Os04t0507500-01
Chr04	irgsp1_rep	CDS	25359789	25359944	.	-	0	Parent=Os04t0507500-01
Chr04	irgsp1_rep	CDS	25359632	25359694	.	-	0	Parent=Os04t0507500-01
Chr04	irgsp1_rep	CDS	25359470	25359538	.	-	0	Parent=Os04t0507500-01
Chr04	irgsp1_rep	CDS	25358959	25359124	.	-	0	Parent=Os04t0507500-01
Chr04	irgsp1_rep	CDS	25357839	25358000	.	-	2	Parent=Os04t0507500-01
Chr04	irgsp1_rep	CDS	25357243	25357340	.	-	2	Parent=Os04t0507500-01
Chr04	irgsp1_rep	CDS	25356800	25356874	.	-	0	Parent=Os04t0507500-01
Chr04	irgsp1_rep	CDS	25356659	25356727	.	-	0	Parent=Os04t0507500-01
Chr04	irgsp1_rep	CDS	25356501	25356586	.	-	0	Parent=Os04t0507500-01
Chr04	irgsp1_rep	CDS	25356301	25356418	.	-	1	Parent=Os04t0507500-01
Chr04	irgsp1_rep	CDS	25355599	25355697	.	-	0	Parent=Os04t0507500-01
Chr04	irgsp1_rep	CDS	25355119	25355499	.	-	0	Parent=Os04t0507500-01
Chr04	irgsp1_rep	three_prime_UTR	25353194	25355118	.	-	.	Parent=Os04t0507500-01
Chr04	irgsp1_rep	three_prime_UTR	25352962	25353060	.	-	.	Parent=Os04t0507500-01
Chr04	irgsp1_rep	three_prime_UTR	25352373	25352477	.	-	.	Parent=Os04t0507500-01
Chr04	irgsp1_rep	three_prime_UTR	25352214	25352288	.	-	.	Parent=Os04t0507500-01
Chr04	irgsp1_rep	three_prime_UTR	25352057	25352125	.	-	.	Parent=Os04t0507500-01
Chr04	irgsp1_rep	three_prime_UTR	25351882	25351950	.	-	.	Parent=Os04t0507500-01
Chr04	irgsp1_rep	three_prime_UTR	25351101	25351202	.	-	.	Parent=Os04t0507500-01
Chr04	irgsp1_rep	three_prime_UTR	25349753	25350309	.	-	.	Parent=Os04t0507500-01
Chr04	irgsp1_rep	mRNA	25349798	25351231	.	-	.	ID=Os04t0507500-02;Name=Os04t0507500-02;Locus_id=Os04g0507500;Note=Similar to OSIGBa0157A06.7 protein.;Transcript_evidence=AK101840 (DDBJ%2C Best hit);ORF_evidence=Q01IV2 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033069D24;Expression=AK101840;TENOR=Os04t0507500-02;KEGG=Os04t0507500-02
Chr04	irgsp1_rep	five_prime_UTR	25351230	25351231	.	-	.	Parent=Os04t0507500-02
Chr04	irgsp1_rep	CDS	25351101	25351229	.	-	0	Parent=Os04t0507500-02
Chr04	irgsp1_rep	CDS	25350151	25350309	.	-	0	Parent=Os04t0507500-02
Chr04	irgsp1_rep	three_prime_UTR	25349798	25350150	.	-	.	Parent=Os04t0507500-02
Chr04	irgsp1_rep	mRNA	25368373	25372042	.	+	.	ID=Os04t0507700-01;Name=Os04t0507700-01;Locus_id=Os04g0507700;CGSNL Gene Symbol=GELP56;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 56;Oryzabase Gene Symbol Synonym(s)=OsGELP56;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 56;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK121383 (DDBJ%2C Best hit);ORF_evidence=B6TKM2 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=J023127I10;Oryzabase=11006;Expression=AK121383;TENOR=Os04t0507700-01;KEGG=Os04t0507700-01
Chr04	irgsp1_rep	five_prime_UTR	25368373	25368873	.	+	.	Parent=Os04t0507700-01
Chr04	irgsp1_rep	CDS	25368874	25369120	.	+	0	Parent=Os04t0507700-01
Chr04	irgsp1_rep	CDS	25369226	25369353	.	+	2	Parent=Os04t0507700-01
Chr04	irgsp1_rep	CDS	25369436	25369678	.	+	0	Parent=Os04t0507700-01
Chr04	irgsp1_rep	CDS	25371098	25371350	.	+	0	Parent=Os04t0507700-01
Chr04	irgsp1_rep	CDS	25371484	25371719	.	+	2	Parent=Os04t0507700-01
Chr04	irgsp1_rep	three_prime_UTR	25371720	25372042	.	+	.	Parent=Os04t0507700-01
Chr04	irgsp1_rep	mRNA	25372496	25374576	.	-	.	ID=Os04t0507800-01;Name=Os04t0507800-01;Locus_id=Os04g0507800;Note=UbiE/COQ5 methyltransferase family protein.;Transcript_evidence=AK111060 (DDBJ%2C Best hit);ORF_evidence=Q01I80 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=UbiE/COQ5 methyltransferase (IPR004033);NIAS_FLcDNA=002-175-D07;Expression=AK111060;TENOR=Os04t0507800-01;KEGG=Os04t0507800-01
Chr04	irgsp1_rep	five_prime_UTR	25374415	25374576	.	-	.	Parent=Os04t0507800-01
Chr04	irgsp1_rep	five_prime_UTR	25374300	25374316	.	-	.	Parent=Os04t0507800-01
Chr04	irgsp1_rep	CDS	25374235	25374299	.	-	0	Parent=Os04t0507800-01
Chr04	irgsp1_rep	CDS	25374067	25374157	.	-	1	Parent=Os04t0507800-01
Chr04	irgsp1_rep	CDS	25373884	25373976	.	-	0	Parent=Os04t0507800-01
Chr04	irgsp1_rep	three_prime_UTR	25373873	25373883	.	-	.	Parent=Os04t0507800-01
Chr04	irgsp1_rep	three_prime_UTR	25373621	25373754	.	-	.	Parent=Os04t0507800-01
Chr04	irgsp1_rep	three_prime_UTR	25373469	25373530	.	-	.	Parent=Os04t0507800-01
Chr04	irgsp1_rep	three_prime_UTR	25373168	25373267	.	-	.	Parent=Os04t0507800-01
Chr04	irgsp1_rep	three_prime_UTR	25372496	25372782	.	-	.	Parent=Os04t0507800-01
Chr04	irgsp1_rep	mRNA	25374638	25376674	.	+	.	ID=Os04t0507900-01;Name=Os04t0507900-01;Locus_id=Os04g0507900;Oryzabase Gene Symbol Synonym(s)=OsWD40-102;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK111928 (DDBJ%2C Best hit);ORF_evidence=XP_002864831.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=001-015-E04;Oryzabase=10783;Expression=AK111928;TENOR=Os04t0507900-01;KEGG=Os04t0507900-01
Chr04	irgsp1_rep	five_prime_UTR	25374638	25374756	.	+	.	Parent=Os04t0507900-01
Chr04	irgsp1_rep	CDS	25374757	25375084	.	+	0	Parent=Os04t0507900-01
Chr04	irgsp1_rep	CDS	25375722	25376437	.	+	2	Parent=Os04t0507900-01
Chr04	irgsp1_rep	three_prime_UTR	25376438	25376674	.	+	.	Parent=Os04t0507900-01
Chr04	irgsp1_rep	mRNA	25374678	25376710	.	+	.	ID=Os04t0507900-02;Name=Os04t0507900-02;Locus_id=Os04g0507900;Oryzabase Gene Symbol Synonym(s)=OsWD40-102;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK099220 (DDBJ%2C Best hit);ORF_evidence=XP_002864831.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J013086L24;Oryzabase=10783;Expression=AK099220;TENOR=Os04t0507900-02;KEGG=Os04t0507900-02
Chr04	irgsp1_rep	five_prime_UTR	25374678	25374756	.	+	.	Parent=Os04t0507900-02
Chr04	irgsp1_rep	CDS	25374757	25375084	.	+	0	Parent=Os04t0507900-02
Chr04	irgsp1_rep	CDS	25375722	25376437	.	+	2	Parent=Os04t0507900-02
Chr04	irgsp1_rep	three_prime_UTR	25376438	25376710	.	+	.	Parent=Os04t0507900-02
Chr04	irgsp1_rep	mRNA	25380760	25381350	.	+	.	ID=Os04t0507950-01;Name=Os04t0507950-01;Locus_id=Os04g0507950;CGSNL Gene Symbol=KOD1;CGSNL Gene Name=KISS OF DEATH 1;Oryzabase Gene Symbol Synonym(s)=OsKOD1;Oryzabase Gene Name Synonym(s)=kiss of death 1;Note=Hypothetical conserved gene.;Transcript_evidence=AK243047 (DDBJ%2C Best hit);ORF_evidence=B9FG23 (UniProt);NIAS_FLcDNA=J100010C09;Oryzabase=22052;TENOR=Os04t0507950-01;KEGG=Os04t0507950-01
Chr04	irgsp1_rep	five_prime_UTR	25380760	25380837	.	+	.	Parent=Os04t0507950-01
Chr04	irgsp1_rep	CDS	25380838	25381023	.	+	0	Parent=Os04t0507950-01
Chr04	irgsp1_rep	three_prime_UTR	25381024	25381350	.	+	.	Parent=Os04t0507950-01
Chr04	irgsp1_rep	mRNA	25381717	25384946	.	-	.	ID=Os04t0508000-01;Name=Os04t0508000-01;Locus_id=Os04g0508000;Oryzabase Gene Symbol Synonym(s)=OsTBL30%2C TBL30;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 30;Note=Protein of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=AK071432 (DDBJ%2C Best hit);ORF_evidence=Q01I78 (UniProt);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=J023092D01;Oryzabase=21485;Expression=AK071432;TENOR=Os04t0508000-01;KEGG=Os04t0508000-01
Chr04	irgsp1_rep	five_prime_UTR	25384856	25384946	.	-	.	Parent=Os04t0508000-01
Chr04	irgsp1_rep	CDS	25383612	25384855	.	-	0	Parent=Os04t0508000-01
Chr04	irgsp1_rep	CDS	25383170	25383362	.	-	1	Parent=Os04t0508000-01
Chr04	irgsp1_rep	CDS	25382885	25383081	.	-	0	Parent=Os04t0508000-01
Chr04	irgsp1_rep	CDS	25382615	25382773	.	-	1	Parent=Os04t0508000-01
Chr04	irgsp1_rep	CDS	25381977	25382319	.	-	1	Parent=Os04t0508000-01
Chr04	irgsp1_rep	three_prime_UTR	25381717	25381976	.	-	.	Parent=Os04t0508000-01
Chr04	irgsp1_rep	mRNA	25382902	25383790	.	+	.	ID=Os04t0508050-00;Name=Os04t0508050-00;Locus_id=Os04g0508050;Note=Hypothetical protein.;Transcript_evidence=BT087858 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0508050-00
Chr04	irgsp1_rep	five_prime_UTR	25382902	25382935	.	+	.	Parent=Os04t0508050-00
Chr04	irgsp1_rep	CDS	25382936	25383016	.	+	0	Parent=Os04t0508050-00
Chr04	irgsp1_rep	CDS	25383189	25383355	.	+	0	Parent=Os04t0508050-00
Chr04	irgsp1_rep	CDS	25383490	25383553	.	+	1	Parent=Os04t0508050-00
Chr04	irgsp1_rep	three_prime_UTR	25383554	25383790	.	+	.	Parent=Os04t0508050-00
Chr04	irgsp1_rep	mRNA	25385433	25388753	.	+	.	ID=Os04t0508100-01;Name=Os04t0508100-01;Locus_id=Os04g0508100;Note=Similar to OSIGBa0101P20.5 protein.;Transcript_evidence=AK121759 (DDBJ%2C Best hit);ORF_evidence=Q01I77 (UniProt);NIAS_FLcDNA=J033089A17;Expression=AK121759;TENOR=Os04t0508100-01;KEGG=Os04t0508100-01
Chr04	irgsp1_rep	five_prime_UTR	25385433	25385514	.	+	.	Parent=Os04t0508100-01
Chr04	irgsp1_rep	CDS	25385515	25385594	.	+	0	Parent=Os04t0508100-01
Chr04	irgsp1_rep	CDS	25388129	25388190	.	+	1	Parent=Os04t0508100-01
Chr04	irgsp1_rep	CDS	25388326	25388384	.	+	2	Parent=Os04t0508100-01
Chr04	irgsp1_rep	CDS	25388461	25388475	.	+	0	Parent=Os04t0508100-01
Chr04	irgsp1_rep	three_prime_UTR	25388476	25388753	.	+	.	Parent=Os04t0508100-01
Chr04	irgsp1_rep	mRNA	25389381	25390024	.	-	.	ID=Os04t0508150-01;Name=Os04t0508150-01;Locus_id=Os04g0508150;Note=Hypothetical gene.;Transcript_evidence=AK107792 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-133-D06;TENOR=Os04t0508150-01
Chr04	irgsp1_rep	five_prime_UTR	25389730	25390024	.	-	.	Parent=Os04t0508150-01
Chr04	irgsp1_rep	CDS	25389381	25389729	.	-	0	Parent=Os04t0508150-01
Chr04	irgsp1_rep	mRNA	25389649	25395401	.	+	.	ID=Os04t0508200-01;Name=Os04t0508200-01;Locus_id=Os04g0508200;Note=Isocitrate/isopropylmalate dehydrogenase domain containing protein.;Transcript_evidence=AK070042 (DDBJ%2C Best hit);ORF_evidence=B8ARN5 (UniProt);GO=Biological Process: isocitrate metabolic process (GO:0006102),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: isocitrate dehydrogenase (NADP+) activity (GO:0004450),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: NAD binding (GO:0051287);InterPro=Isocitrate dehydrogenase NADP-dependent%2C eukaryotic-type (IPR004790),Isocitrate/isopropylmalate dehydrogenase%2C conserved site (IPR019818),Isopropylmalate dehydrogenase-like domain (IPR024084);NIAS_FLcDNA=J023038I06;Expression=AK070042;TENOR=Os04t0508200-01;KEGG=Os04t0508200-01 (EC:1.1.1.42)
Chr04	irgsp1_rep	five_prime_UTR	25389649	25389697	.	+	.	Parent=Os04t0508200-01
Chr04	irgsp1_rep	CDS	25389698	25389938	.	+	0	Parent=Os04t0508200-01
Chr04	irgsp1_rep	CDS	25390056	25390099	.	+	2	Parent=Os04t0508200-01
Chr04	irgsp1_rep	CDS	25390193	25390302	.	+	0	Parent=Os04t0508200-01
Chr04	irgsp1_rep	CDS	25391399	25391436	.	+	1	Parent=Os04t0508200-01
Chr04	irgsp1_rep	CDS	25392038	25392115	.	+	2	Parent=Os04t0508200-01
Chr04	irgsp1_rep	CDS	25392521	25392574	.	+	2	Parent=Os04t0508200-01
Chr04	irgsp1_rep	CDS	25392656	25392757	.	+	2	Parent=Os04t0508200-01
Chr04	irgsp1_rep	CDS	25392846	25392931	.	+	2	Parent=Os04t0508200-01
Chr04	irgsp1_rep	CDS	25393037	25393140	.	+	0	Parent=Os04t0508200-01
Chr04	irgsp1_rep	CDS	25393555	25393623	.	+	1	Parent=Os04t0508200-01
Chr04	irgsp1_rep	CDS	25393704	25393819	.	+	1	Parent=Os04t0508200-01
Chr04	irgsp1_rep	CDS	25393956	25393990	.	+	2	Parent=Os04t0508200-01
Chr04	irgsp1_rep	CDS	25394081	25394223	.	+	0	Parent=Os04t0508200-01
Chr04	irgsp1_rep	CDS	25394377	25394499	.	+	1	Parent=Os04t0508200-01
Chr04	irgsp1_rep	CDS	25395032	25395125	.	+	1	Parent=Os04t0508200-01
Chr04	irgsp1_rep	three_prime_UTR	25395126	25395401	.	+	.	Parent=Os04t0508200-01
Chr04	irgsp1_rep	mRNA	25397069	25399815	.	+	.	ID=Os04t0508300-01;Name=Os04t0508300-01;Locus_id=Os04g0508300;CGSNL Gene Symbol=GRX;CGSNL Gene Name=GLUTAREDOXIN;Oryzabase Gene Symbol Synonym(s)=grx%2C OsGRX%2C OsGRX14%2C OsGrx9%2C OsGrxC2%3B2%2C GrxC2%3B2%2C OsGrxC2.2%2C GrxC2.2;Oryzabase Gene Name Synonym(s)=glutaredoxin%2C glutaredoxin 14%2C CPYC-type Glutaredoxin 2.2;Note=Glutaredoxin.;Transcript_evidence=AK065962 (DDBJ%2C Best hit);ORF_evidence=Q01I75 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin (IPR002109),Glutaredoxin active site (IPR011767),Glutaredoxin%2C eukaryotic/virial (IPR011899),Thioredoxin-like fold (IPR012336),Glutaredoxin subgroup (IPR014025);NIAS_FLcDNA=J013046M11;Oryzabase=6055;Expression=AK065962;TENOR=Os04t0508300-01;KEGG=Os04t0508300-01
Chr04	irgsp1_rep	five_prime_UTR	25397069	25397110	.	+	.	Parent=Os04t0508300-01
Chr04	irgsp1_rep	CDS	25397111	25397166	.	+	0	Parent=Os04t0508300-01
Chr04	irgsp1_rep	CDS	25398160	25398248	.	+	1	Parent=Os04t0508300-01
Chr04	irgsp1_rep	CDS	25399256	25399354	.	+	2	Parent=Os04t0508300-01
Chr04	irgsp1_rep	CDS	25399529	25399623	.	+	2	Parent=Os04t0508300-01
Chr04	irgsp1_rep	three_prime_UTR	25399624	25399815	.	+	.	Parent=Os04t0508300-01
Chr04	irgsp1_rep	mRNA	25396939	25399827	.	+	.	ID=Os04t0508300-02;Name=Os04t0508300-02;Locus_id=Os04g0508300;RAP-DB Gene Symbol Synonym(s)=OsGrxC2.2;CGSNL Gene Symbol=GRX;CGSNL Gene Name=GLUTAREDOXIN;Oryzabase Gene Symbol Synonym(s)=grx%2C OsGRX%2C OsGRX14%2C OsGrx9%2C OsGrxC2%3B2%2C GrxC2%3B2%2C OsGrxC2.2%2C GrxC2.2;Oryzabase Gene Name Synonym(s)=glutaredoxin%2C glutaredoxin 14%2C CPYC-type Glutaredoxin 2.2;Note=Glutaredoxin%2C Regulation of embryo development;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron transfer activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Thioredoxin-like superfamily (IPR036249),Glutaredoxin (IPR002109),Glutaredoxin subgroup (IPR014025),Glutaredoxin%2C eukaryotic/virial (IPR011899),Glutaredoxin active site (IPR011767);NIAS_FLcDNA=J013046M11;Manual Curation=July 22%2C 2019;Literature_PMID=31316541;Oryzabase=6055;Expression=AK065962;TENOR=Os04t0508300-01;KEGG=Os04t0508300-01;Subcellular location=cytoplasm (GO:0005737)
Chr04	irgsp1_rep	five_prime_UTR	25396939	25397065	.	+	.	Parent=Os04t0508300-02
Chr04	irgsp1_rep	CDS	25397066	25397166	.	+	0	Parent=Os04t0508300-02
Chr04	irgsp1_rep	CDS	25398160	25398248	.	+	1	Parent=Os04t0508300-02
Chr04	irgsp1_rep	CDS	25399256	25399354	.	+	2	Parent=Os04t0508300-02
Chr04	irgsp1_rep	CDS	25399529	25399623	.	+	2	Parent=Os04t0508300-02
Chr04	irgsp1_rep	three_prime_UTR	25399624	25399827	.	+	.	Parent=Os04t0508300-02
Chr04	irgsp1_rep	mRNA	25400256	25401434	.	-	.	ID=Os04t0508400-00;Name=Os04t0508400-00;Locus_id=Os04g0508400;Note=No apical meristem (NAM) protein domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8ARN6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);TENOR=Os04t0508400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	25401159	25401434	.	-	0	Parent=Os04t0508400-00
Chr04	irgsp1_rep	CDS	25400256	25400834	.	-	0	Parent=Os04t0508400-00
Chr04	irgsp1_rep	mRNA	25405125	25407689	.	-	.	ID=Os04t0508500-01;Name=Os04t0508500-01;Locus_id=Os04g0508500;Oryzabase Gene Symbol Synonym(s)=R2R3-MYB;Note=Similar to OSIGBa0101P20.9 protein.;Transcript_evidence=AK109620 (DDBJ%2C Best hit);ORF_evidence=Q01I73 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=002-138-A05;Oryzabase=16306;TENOR=Os04t0508500-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	25407468	25407689	.	-	.	Parent=Os04t0508500-01
Chr04	irgsp1_rep	CDS	25407302	25407467	.	-	0	Parent=Os04t0508500-01
Chr04	irgsp1_rep	CDS	25406084	25406213	.	-	2	Parent=Os04t0508500-01
Chr04	irgsp1_rep	CDS	25405429	25405978	.	-	1	Parent=Os04t0508500-01
Chr04	irgsp1_rep	three_prime_UTR	25405125	25405428	.	-	.	Parent=Os04t0508500-01
Chr04	irgsp1_rep	mRNA	25417088	25418713	.	+	.	ID=Os04t0508600-01;Name=Os04t0508600-01;Locus_id=Os04g0508600;Note=Transmembrane receptor%2C eukaryota domain containing protein.;Transcript_evidence=AK120762 (DDBJ%2C Best hit);ORF_evidence=Q01I72 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Transmembrane receptor%2C eukaryota (IPR009637);NIAS_FLcDNA=J023007G09;Expression=AK120762;TENOR=Os04t0508600-01;KEGG=Os04t0508600-01
Chr04	irgsp1_rep	five_prime_UTR	25417088	25417120	.	+	.	Parent=Os04t0508600-01
Chr04	irgsp1_rep	CDS	25417121	25418473	.	+	0	Parent=Os04t0508600-01
Chr04	irgsp1_rep	three_prime_UTR	25418474	25418713	.	+	.	Parent=Os04t0508600-01
Chr04	irgsp1_rep	mRNA	25421987	25422322	.	-	.	ID=Os04t0508751-00;Name=Os04t0508751-00;Locus_id=Os04g0508751;Note=Similar to inorganic phosphate transporter 1-7.;Transcript_evidence=FP094689 (DDBJ);ORF_evidence=NP_001151202.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transmembrane transporter activity (GO:0022857);InterPro=General substrate transporter (IPR005828),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);TENOR=Os04t0508751-00;KEGG=Os04t0508751-00
Chr04	irgsp1_rep	CDS	25421987	25422322	.	-	0	Parent=Os04t0508751-00
Chr04	irgsp1_rep	mRNA	25424202	25429268	.	-	.	ID=Os04t0508800-01;Name=Os04t0508800-01;Locus_id=Os04g0508800;Oryzabase Gene Symbol Synonym(s)=OsRFP;Oryzabase Gene Name Synonym(s)=RING Finger Protein;Note=Similar to Retroelement pol polyprotein-like.;Transcript_evidence=AK065106 (DDBJ%2C Best hit);ORF_evidence=Q01I70 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),von Willebrand factor%2C type A (IPR002035),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J013001N16;Oryzabase=21084;Expression=AK065106;TENOR=Os04t0508800-01;KEGG=Os04t0508800-01
Chr04	irgsp1_rep	five_prime_UTR	25429193	25429268	.	-	.	Parent=Os04t0508800-01
Chr04	irgsp1_rep	five_prime_UTR	25428975	25429186	.	-	.	Parent=Os04t0508800-01
Chr04	irgsp1_rep	CDS	25428705	25428974	.	-	0	Parent=Os04t0508800-01
Chr04	irgsp1_rep	CDS	25424406	25426262	.	-	0	Parent=Os04t0508800-01
Chr04	irgsp1_rep	three_prime_UTR	25424202	25424405	.	-	.	Parent=Os04t0508800-01
Chr04	irgsp1_rep	mRNA	25435284	25439059	.	-	.	ID=Os04t0508900-00;Name=Os04t0508900-00;Locus_id=Os04g0508900;Oryzabase Gene Name Synonym(s)=TFIIH p44 subunit;Note=Similar to OSIGBa0101P20.13 protein.;Transcript_evidence=AK373553 (DDBJ);ORF_evidence=Q01I82 (UniProt);GO=Biological Process: DNA repair (GO:0006281),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: intracellular (GO:0005622),Cellular Component: nucleus (GO:0005634),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=von Willebrand factor%2C type A (IPR002035),TFIIH C1-like%2C C-terminal (IPR004595),Zinc finger%2C C2H2 (IPR007087),Ssl1-like (IPR007198),TFIIH basal transcription factor complex%2C subunit SSL1 (IPR012170);Oryzabase=21066;TENOR=Os04t0508900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	25438541	25439059	.	-	0	Parent=Os04t0508900-00
Chr04	irgsp1_rep	CDS	25436656	25437117	.	-	0	Parent=Os04t0508900-00
Chr04	irgsp1_rep	CDS	25436197	25436575	.	-	0	Parent=Os04t0508900-00
Chr04	irgsp1_rep	CDS	25435640	25435767	.	-	2	Parent=Os04t0508900-00
Chr04	irgsp1_rep	three_prime_UTR	25435284	25435639	.	-	.	Parent=Os04t0508900-00
Chr04	irgsp1_rep	mRNA	25455143	25458887	.	-	.	ID=Os04t0508975-00;Name=Os04t0508975-00;Locus_id=Os04g0508975;Note=Non-protein coding transcript.;Transcript_evidence=tplb0042j09 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os04t0508975-00
Chr04	irgsp1_rep	exon	25458549	25458887	.	-	.	Parent=Os04t0508975-00
Chr04	irgsp1_rep	exon	25456829	25457046	.	-	.	Parent=Os04t0508975-00
Chr04	irgsp1_rep	exon	25456046	25456706	.	-	.	Parent=Os04t0508975-00
Chr04	irgsp1_rep	exon	25455143	25455519	.	-	.	Parent=Os04t0508975-00
Chr04	irgsp1_rep	mRNA	25456824	25459820	.	+	.	ID=Os04t0509000-01;Name=Os04t0509000-01;Locus_id=Os04g0509000;Note=Similar to Pto kinase interactor 1.;Transcript_evidence=AK109631 (DDBJ%2C Best hit);ORF_evidence=Q2N1D8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-138-D04;Expression=AK109631;TENOR=Os04t0509000-01;KEGG=Os04t0509000-01
Chr04	irgsp1_rep	five_prime_UTR	25456824	25456825	.	+	.	Parent=Os04t0509000-01
Chr04	irgsp1_rep	CDS	25456826	25457052	.	+	0	Parent=Os04t0509000-01
Chr04	irgsp1_rep	CDS	25458555	25459305	.	+	1	Parent=Os04t0509000-01
Chr04	irgsp1_rep	three_prime_UTR	25459306	25459820	.	+	.	Parent=Os04t0509000-01
Chr04	irgsp1_rep	mRNA	25460247	25467782	.	+	.	ID=Os04t0509100-00;Name=Os04t0509100-00;Locus_id=Os04g0509100;Note=Similar to triacylglycerol lipase.;Transcript_evidence=AK359843 (DDBJ);ORF_evidence=NP_193091.5 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: triglyceride lipase activity (GO:0004806),Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),Lipase%2C class 3 (IPR002921),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),C2 membrane targeting protein (IPR018029);TENOR=Os04t0509100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	25460247	25460576	.	+	0	Parent=Os04t0509100-00
Chr04	irgsp1_rep	CDS	25460687	25460745	.	+	0	Parent=Os04t0509100-00
Chr04	irgsp1_rep	CDS	25460914	25460995	.	+	1	Parent=Os04t0509100-00
Chr04	irgsp1_rep	CDS	25461360	25461427	.	+	0	Parent=Os04t0509100-00
Chr04	irgsp1_rep	CDS	25461622	25461691	.	+	1	Parent=Os04t0509100-00
Chr04	irgsp1_rep	CDS	25462319	25462400	.	+	0	Parent=Os04t0509100-00
Chr04	irgsp1_rep	CDS	25463328	25463392	.	+	2	Parent=Os04t0509100-00
Chr04	irgsp1_rep	CDS	25463810	25464877	.	+	0	Parent=Os04t0509100-00
Chr04	irgsp1_rep	CDS	25464953	25465015	.	+	0	Parent=Os04t0509100-00
Chr04	irgsp1_rep	CDS	25465119	25465165	.	+	0	Parent=Os04t0509100-00
Chr04	irgsp1_rep	CDS	25465303	25465348	.	+	1	Parent=Os04t0509100-00
Chr04	irgsp1_rep	CDS	25465440	25465519	.	+	0	Parent=Os04t0509100-00
Chr04	irgsp1_rep	CDS	25465619	25465735	.	+	1	Parent=Os04t0509100-00
Chr04	irgsp1_rep	CDS	25466411	25466492	.	+	1	Parent=Os04t0509100-00
Chr04	irgsp1_rep	CDS	25466725	25466850	.	+	0	Parent=Os04t0509100-00
Chr04	irgsp1_rep	CDS	25466988	25467002	.	+	0	Parent=Os04t0509100-00
Chr04	irgsp1_rep	three_prime_UTR	25467003	25467058	.	+	.	Parent=Os04t0509100-00
Chr04	irgsp1_rep	three_prime_UTR	25467312	25467437	.	+	.	Parent=Os04t0509100-00
Chr04	irgsp1_rep	three_prime_UTR	25467668	25467782	.	+	.	Parent=Os04t0509100-00
Chr04	irgsp1_rep	mRNA	25468673	25471511	.	-	.	ID=Os04t0509200-01;Name=Os04t0509200-01;Locus_id=Os04g0509200;Note=Similar to OSIGBa0157K09-H0214G12.1 protein.;Transcript_evidence=AK069997 (DDBJ%2C Best hit);ORF_evidence=Q01HF6 (UniProt);NIAS_FLcDNA=J023038G06;Expression=AK069997;TENOR=Os04t0509200-01;KEGG=Os04t0509200-01
Chr04	irgsp1_rep	five_prime_UTR	25471395	25471511	.	-	.	Parent=Os04t0509200-01
Chr04	irgsp1_rep	CDS	25471200	25471394	.	-	0	Parent=Os04t0509200-01
Chr04	irgsp1_rep	CDS	25470223	25470355	.	-	0	Parent=Os04t0509200-01
Chr04	irgsp1_rep	CDS	25469934	25470059	.	-	2	Parent=Os04t0509200-01
Chr04	irgsp1_rep	CDS	25469790	25469854	.	-	2	Parent=Os04t0509200-01
Chr04	irgsp1_rep	CDS	25469174	25469261	.	-	0	Parent=Os04t0509200-01
Chr04	irgsp1_rep	CDS	25469010	25469086	.	-	2	Parent=Os04t0509200-01
Chr04	irgsp1_rep	three_prime_UTR	25468673	25469009	.	-	.	Parent=Os04t0509200-01
Chr04	irgsp1_rep	mRNA	25474092	25489203	.	-	.	ID=Os04t0509300-01;Name=Os04t0509300-01;Locus_id=Os04g0509300;RAP-DB Gene Symbol Synonym(s)=SHO1%2C sho1%2C DCL4%2C OsDCL4%2C Os DCL4%2C Dcl4;RAP-DB Gene Name Synonym(s)=SHOOT ORGANIZATION 1%2C shoot organization 1%2C shoot organization-1%2C shoot organization1%2C Endoribonuclease Dicer homolog 4%2C Dicer-like protein 4%2C Protein SHOOT ORGANIZATION 1%2C Oryza sativa dicer-like4%2C Oryza sativa dicer-like 4%2C Dicer like 4;CGSNL Gene Symbol=SHO1;CGSNL Gene Name=SHOOT ORGANIZATION 1;Oryzabase Gene Symbol Synonym(s)=sho1%2C DCL4%2C OsDCL4%2C Os DCL4%2C Dcl4;Oryzabase Gene Name Synonym(s)=shoot organization 1%2C shoot organization-1%2C shoot organization1%2C Endoribonuclease Dicer homolog 4%2C Dicer-like protein 4%2C Protein SHOOT ORGANIZATION 1%2C Oryza sativa dicer-like4%2C Oryza sativa dicer-like 4%2C Dicer like 4;Note=Rnase III family protein%2C Shoot apical meristem (SAM) formation and maintenance;Transcript_evidence=AB353922 (Genbank);ORF_evidence=A7LFZ6 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723),Molecular Function: double-stranded RNA binding (GO:0003725),Molecular Function: helicase activity (GO:0004386),Molecular Function: ribonuclease III activity (GO:0004525),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026),Molecular Function: endoribonuclease activity%2C producing 5'-phosphomonoesters (GO:0016891);InterPro=Ribonuclease III domain (IPR000999),Double-stranded RNA-binding (IPR001159),Helicase%2C C-terminal (IPR001650),Argonaute/Dicer protein%2C PAZ (IPR003100),Dicer double-stranded RNA-binding fold (IPR005034),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),Helicase%2C superfamily 1/2%2C ATP-binding domain (IPR014001),Double-stranded RNA-binding-like (IPR014720);Manual Curation=August 28%2C 2009;Literature_PMID=11090216,17804793;Oryzabase=597;TENOR=Os04t0509300-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	25489004	25489203	.	-	.	Parent=Os04t0509300-01
Chr04	irgsp1_rep	CDS	25488909	25489003	.	-	0	Parent=Os04t0509300-01
Chr04	irgsp1_rep	CDS	25487763	25487940	.	-	1	Parent=Os04t0509300-01
Chr04	irgsp1_rep	CDS	25487344	25487454	.	-	0	Parent=Os04t0509300-01
Chr04	irgsp1_rep	CDS	25486866	25487006	.	-	0	Parent=Os04t0509300-01
Chr04	irgsp1_rep	CDS	25486444	25486519	.	-	0	Parent=Os04t0509300-01
Chr04	irgsp1_rep	CDS	25485118	25485182	.	-	2	Parent=Os04t0509300-01
Chr04	irgsp1_rep	CDS	25484884	25485018	.	-	0	Parent=Os04t0509300-01
Chr04	irgsp1_rep	CDS	25484643	25484771	.	-	0	Parent=Os04t0509300-01
Chr04	irgsp1_rep	CDS	25483807	25483942	.	-	0	Parent=Os04t0509300-01
Chr04	irgsp1_rep	CDS	25482727	25482820	.	-	2	Parent=Os04t0509300-01
Chr04	irgsp1_rep	CDS	25482310	25482502	.	-	1	Parent=Os04t0509300-01
Chr04	irgsp1_rep	CDS	25481690	25481850	.	-	0	Parent=Os04t0509300-01
Chr04	irgsp1_rep	CDS	25481378	25481584	.	-	1	Parent=Os04t0509300-01
Chr04	irgsp1_rep	CDS	25481005	25481270	.	-	1	Parent=Os04t0509300-01
Chr04	irgsp1_rep	CDS	25480655	25480929	.	-	2	Parent=Os04t0509300-01
Chr04	irgsp1_rep	CDS	25480153	25480577	.	-	0	Parent=Os04t0509300-01
Chr04	irgsp1_rep	CDS	25479873	25479973	.	-	1	Parent=Os04t0509300-01
Chr04	irgsp1_rep	CDS	25479186	25479397	.	-	2	Parent=Os04t0509300-01
Chr04	irgsp1_rep	CDS	25478876	25479085	.	-	0	Parent=Os04t0509300-01
Chr04	irgsp1_rep	CDS	25478040	25478498	.	-	0	Parent=Os04t0509300-01
Chr04	irgsp1_rep	CDS	25477659	25477931	.	-	0	Parent=Os04t0509300-01
Chr04	irgsp1_rep	CDS	25476868	25477197	.	-	0	Parent=Os04t0509300-01
Chr04	irgsp1_rep	CDS	25476110	25476446	.	-	0	Parent=Os04t0509300-01
Chr04	irgsp1_rep	CDS	25475585	25475699	.	-	2	Parent=Os04t0509300-01
Chr04	irgsp1_rep	CDS	25474343	25474514	.	-	1	Parent=Os04t0509300-01
Chr04	irgsp1_rep	three_prime_UTR	25474092	25474342	.	-	.	Parent=Os04t0509300-01
Chr04	irgsp1_rep	mRNA	25474093	25489093	.	-	.	ID=Os04t0509300-02;Name=Os04t0509300-02;Locus_id=Os04g0509300;RAP-DB Gene Symbol Synonym(s)=DCL4%2C OsDCL4%2C Os DCL4%2C Dcl4;RAP-DB Gene Name Synonym(s)=DICER-LIKE 4%2C Oryza sativa dicer-like4%2C Oryza sativa dicer-like 4%2C Dicer like 4;CGSNL Gene Symbol=SHO1;CGSNL Gene Name=SHOOT ORGANIZATION 1;Oryzabase Gene Symbol Synonym(s)=sho1%2C DCL4%2C OsDCL4%2C Os DCL4%2C Dcl4;Oryzabase Gene Name Synonym(s)=shoot organization 1%2C shoot organization-1%2C shoot organization1%2C Endoribonuclease Dicer homolog 4%2C Dicer-like protein 4%2C Protein SHOOT ORGANIZATION 1%2C Oryza sativa dicer-like4%2C Oryza sativa dicer-like 4%2C Dicer like 4;Note=Rnase III family protein%2C Trans-acting siRNA3 (ta-siRNA)(TAS3) biogenesis;Transcript_evidence=EU009924 (Genbank);ORF_evidence=A7LFZ6 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723),Molecular Function: double-stranded RNA binding (GO:0003725),Molecular Function: helicase activity (GO:0004386),Molecular Function: ribonuclease III activity (GO:0004525),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026),Molecular Function: endoribonuclease activity%2C producing 5'-phosphomonoesters (GO:0016891);InterPro=Ribonuclease III domain (IPR000999),Double-stranded RNA-binding (IPR001159),Helicase%2C C-terminal (IPR001650),Argonaute/Dicer protein%2C PAZ (IPR003100),Dicer double-stranded RNA-binding fold (IPR005034),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),Helicase%2C superfamily 1/2%2C ATP-binding domain (IPR014001);Manual Curation=August 28%2C 2009;Literature_PMID=17905898;Oryzabase=597
Chr04	irgsp1_rep	five_prime_UTR	25489004	25489093	.	-	.	Parent=Os04t0509300-02
Chr04	irgsp1_rep	CDS	25488909	25489003	.	-	0	Parent=Os04t0509300-02
Chr04	irgsp1_rep	CDS	25487763	25487940	.	-	1	Parent=Os04t0509300-02
Chr04	irgsp1_rep	CDS	25487344	25487454	.	-	0	Parent=Os04t0509300-02
Chr04	irgsp1_rep	CDS	25486866	25487006	.	-	0	Parent=Os04t0509300-02
Chr04	irgsp1_rep	CDS	25486444	25486519	.	-	0	Parent=Os04t0509300-02
Chr04	irgsp1_rep	CDS	25485757	25485834	.	-	2	Parent=Os04t0509300-02
Chr04	irgsp1_rep	CDS	25485118	25485182	.	-	2	Parent=Os04t0509300-02
Chr04	irgsp1_rep	CDS	25484884	25485018	.	-	0	Parent=Os04t0509300-02
Chr04	irgsp1_rep	CDS	25484643	25484771	.	-	0	Parent=Os04t0509300-02
Chr04	irgsp1_rep	CDS	25483807	25483942	.	-	0	Parent=Os04t0509300-02
Chr04	irgsp1_rep	CDS	25482727	25482820	.	-	2	Parent=Os04t0509300-02
Chr04	irgsp1_rep	CDS	25482310	25482502	.	-	1	Parent=Os04t0509300-02
Chr04	irgsp1_rep	CDS	25481690	25481850	.	-	0	Parent=Os04t0509300-02
Chr04	irgsp1_rep	CDS	25481378	25481584	.	-	1	Parent=Os04t0509300-02
Chr04	irgsp1_rep	CDS	25481005	25481270	.	-	1	Parent=Os04t0509300-02
Chr04	irgsp1_rep	CDS	25480655	25480929	.	-	2	Parent=Os04t0509300-02
Chr04	irgsp1_rep	CDS	25480153	25480577	.	-	0	Parent=Os04t0509300-02
Chr04	irgsp1_rep	CDS	25479873	25479973	.	-	1	Parent=Os04t0509300-02
Chr04	irgsp1_rep	CDS	25479186	25479397	.	-	2	Parent=Os04t0509300-02
Chr04	irgsp1_rep	CDS	25478876	25479085	.	-	0	Parent=Os04t0509300-02
Chr04	irgsp1_rep	CDS	25478040	25478498	.	-	0	Parent=Os04t0509300-02
Chr04	irgsp1_rep	CDS	25477659	25477931	.	-	0	Parent=Os04t0509300-02
Chr04	irgsp1_rep	CDS	25476868	25477197	.	-	0	Parent=Os04t0509300-02
Chr04	irgsp1_rep	CDS	25476110	25476446	.	-	0	Parent=Os04t0509300-02
Chr04	irgsp1_rep	CDS	25475585	25475699	.	-	2	Parent=Os04t0509300-02
Chr04	irgsp1_rep	CDS	25474343	25474514	.	-	1	Parent=Os04t0509300-02
Chr04	irgsp1_rep	three_prime_UTR	25474093	25474342	.	-	.	Parent=Os04t0509300-02
Chr04	irgsp1_rep	mRNA	25492298	25493120	.	+	.	ID=Os04t0509400-01;Name=Os04t0509400-01;Locus_id=Os04g0509400;Note=RmlC-like jelly roll fold domain containing protein.;Transcript_evidence=AK240893 (DDBJ%2C Best hit);ORF_evidence=Q01HF4 (UniProt);InterPro=Domain of unknown function DUF861%2C cupin-3 (IPR008579),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710);NIAS_FLcDNA=J065030M05;TENOR=Os04t0509400-01;KEGG=Os04t0509400-01
Chr04	irgsp1_rep	five_prime_UTR	25492298	25492472	.	+	.	Parent=Os04t0509400-01
Chr04	irgsp1_rep	CDS	25492473	25492594	.	+	0	Parent=Os04t0509400-01
Chr04	irgsp1_rep	CDS	25492724	25492931	.	+	1	Parent=Os04t0509400-01
Chr04	irgsp1_rep	three_prime_UTR	25492932	25493120	.	+	.	Parent=Os04t0509400-01
Chr04	irgsp1_rep	mRNA	25500158	25501974	.	-	.	ID=Os04t0509500-01;Name=Os04t0509500-01;Locus_id=Os04g0509500;Note=Hypothetical protein.;Transcript_evidence=AK107601 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-131-B06;TENOR=Os04t0509500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	25500478	25501974	.	-	0	Parent=Os04t0509500-01
Chr04	irgsp1_rep	three_prime_UTR	25500158	25500477	.	-	.	Parent=Os04t0509500-01
Chr04	irgsp1_rep	mRNA	25500515	25502557	.	+	.	ID=Os04t0509600-01;Name=Os04t0509600-01;Locus_id=Os04g0509600;RAP-DB Gene Symbol Synonym(s)=AMT1%3B1%2C OsAMT1%3B1%2C OsAMT1:1%2C OsAMT1%2C AMT1-1%2C AMT1%2C OsAMT1p%2C OsAMT1-1%2C Osamt1-1%2C "OsAMT1%2C1"%2C OsAMT1.1;RAP-DB Gene Name Synonym(s)=AMMONIUM TRANSPORTER-1%3B1%2C ammonium transporter-1%3B1%2C ammonium transporter 1%3B1%2C Ammonium transporter 1 member 1%2C Ammonium transporter-1%2C ammonium transporter 1-1%2C "NH4+ transporter 1%2C1"%2C NH4+ transporter 1;CGSNL Gene Symbol=AMT1%3B1;CGSNL Gene Name=AMMONIUM TRANSPORTER-1%3B1;Oryzabase Gene Symbol Synonym(s)=OsAMT1%3B1%2C OsAMT1:1%2C OsAMT1%2C AMT1-1%2C AMT1%2C OsAMT1p%2C OsAMT1-1%2C Osamt1-1%2C "OsAMT1%2C 1"%2C OsAMT1.1%2C AMT1.1%2C FCO12;Oryzabase Gene Name Synonym(s)=ammonium transporter-1%3B1%2C ammonium transporter 1%3B1%2C Ammonium transporter 1 member 1%2C Ammonium transporter-1%2C ammonium transporter 1-1%2C "NH4+ transporter 1%2C 1"%2C NH4+ transporter 1%2C Functioning in Cesium Over-transport 12;Note=Ammonium transporter%2C Ammonium uptake%2C Ammonium transport;Transcript_evidence=AK073718;ORF_evidence=Q7XQ12;GO=Biological Process: ammonium transport (GO:0015696),Biological Process: ammonium transmembrane transport (GO:0072488),Molecular Function: ammonium transmembrane transporter activity (GO:0008519),Cellular Component: membrane (GO:0016020);InterPro=Ammonium transporter (IPR001905),Ammonium/urea transporter (IPR029020),Ammonium transporter AmtB-like domain (IPR024041),Ammonium transporter%2C conserved site (IPR018047);NIAS_FLcDNA=J033060L01;Manual Curation=January 19%2C 2017;Literature_PMID=24420570,12881500;Oryzabase=2268;TENOR=Os04t0509600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	25500515	25500597	.	+	.	Parent=Os04t0509600-01
Chr04	irgsp1_rep	CDS	25500598	25502094	.	+	0	Parent=Os04t0509600-01
Chr04	irgsp1_rep	three_prime_UTR	25502095	25502557	.	+	.	Parent=Os04t0509600-01
Chr04	irgsp1_rep	mRNA	25500790	25502557	.	+	.	ID=Os04t0509600-02;Name=Os04t0509600-02;Locus_id=Os04g0509600;CGSNL Gene Symbol=AMT1%3B1;CGSNL Gene Name=AMMONIUM TRANSPORTER-1%3B1;Oryzabase Gene Symbol Synonym(s)=OsAMT1%3B1%2C OsAMT1:1%2C OsAMT1%2C AMT1-1%2C AMT1%2C OsAMT1p%2C OsAMT1-1%2C Osamt1-1%2C "OsAMT1%2C 1"%2C OsAMT1.1%2C AMT1.1%2C FCO12;Oryzabase Gene Name Synonym(s)=ammonium transporter-1%3B1%2C ammonium transporter 1%3B1%2C Ammonium transporter 1 member 1%2C Ammonium transporter-1%2C ammonium transporter 1-1%2C "NH4+ transporter 1%2C 1"%2C NH4+ transporter 1%2C Functioning in Cesium Over-transport 12;Note=Similar to OSIGBa0157K09-H0214G12.4 protein.;Transcript_evidence=AK105667 (DDBJ%2C Best hit);ORF_evidence=Q7XQ12 (UniProt);GO=Biological Process: ammonium transmembrane transport (GO:0072488),Cellular Component: membrane (GO:0016020),Molecular Function: ammonium transmembrane transporter activity (GO:0008519);InterPro=Ammonium transporter (IPR001905),Ammonium transporter%2C conserved site (IPR018047),Ammonium transporter AmtB-like (IPR024041);NIAS_FLcDNA=001-200-H11;Oryzabase=2268;Expression=AK105667;TENOR=Os04t0509600-02;KEGG=Os04t0509600-02
Chr04	irgsp1_rep	CDS	25500790	25502094	.	+	0	Parent=Os04t0509600-02
Chr04	irgsp1_rep	three_prime_UTR	25502095	25502557	.	+	.	Parent=Os04t0509600-02
Chr04	irgsp1_rep	mRNA	25515488	25516137	.	-	.	ID=Os04t0509800-01;Name=Os04t0509800-01;Locus_id=Os04g0509800;Note=Conserved hypothetical protein.;Transcript_evidence=AK072717 (DDBJ%2C Best hit);ORF_evidence=NP_001042418.1 (RefSeq);NIAS_FLcDNA=J023141D18;Expression=AK072717;TENOR=Os04t0509800-01;KEGG=Os04t0509800-01
Chr04	irgsp1_rep	five_prime_UTR	25516136	25516137	.	-	.	Parent=Os04t0509800-01
Chr04	irgsp1_rep	CDS	25515686	25516135	.	-	0	Parent=Os04t0509800-01
Chr04	irgsp1_rep	three_prime_UTR	25515488	25515685	.	-	.	Parent=Os04t0509800-01
Chr04	irgsp1_rep	mRNA	25518258	25518789	.	-	.	ID=Os04t0510000-01;Name=Os04t0510000-01;Locus_id=Os04g0510000;Note=Similar to OSIGBa0157K09-H0214G12.6 protein.;Transcript_evidence=AK109180 (DDBJ%2C Best hit);ORF_evidence=Q01HF1 (UniProt);InterPro=DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=002-156-A03;Expression=AK109180;TENOR=Os04t0510000-01;KEGG=Os04t0510000-01
Chr04	irgsp1_rep	five_prime_UTR	25518618	25518789	.	-	.	Parent=Os04t0510000-01
Chr04	irgsp1_rep	CDS	25518312	25518617	.	-	0	Parent=Os04t0510000-01
Chr04	irgsp1_rep	three_prime_UTR	25518258	25518311	.	-	.	Parent=Os04t0510000-01
Chr04	irgsp1_rep	mRNA	25526675	25531117	.	+	.	ID=Os04t0510200-01;Name=Os04t0510200-01;Locus_id=Os04g0510200;Note=Similar to STYLOSA protein.;Transcript_evidence=AK108706 (DDBJ%2C Best hit);ORF_evidence=Q01HE9 (UniProt);GO=Molecular Function: single-stranded DNA binding (GO:0003697),Molecular Function: protein binding (GO:0005515);InterPro=LisH dimerisation motif (IPR006594),Sequence-specific single-strand DNA-binding protein (IPR008116),LisH dimerisation motif%2C subgroup (IPR013720);NIAS_FLcDNA=002-150-A06;TENOR=Os04t0510200-01
Chr04	irgsp1_rep	five_prime_UTR	25526675	25527035	.	+	.	Parent=Os04t0510200-01
Chr04	irgsp1_rep	five_prime_UTR	25527143	25527146	.	+	.	Parent=Os04t0510200-01
Chr04	irgsp1_rep	CDS	25527147	25527178	.	+	0	Parent=Os04t0510200-01
Chr04	irgsp1_rep	CDS	25527266	25527363	.	+	1	Parent=Os04t0510200-01
Chr04	irgsp1_rep	CDS	25529375	25529484	.	+	2	Parent=Os04t0510200-01
Chr04	irgsp1_rep	CDS	25529567	25529862	.	+	0	Parent=Os04t0510200-01
Chr04	irgsp1_rep	CDS	25529968	25530043	.	+	1	Parent=Os04t0510200-01
Chr04	irgsp1_rep	CDS	25530146	25530257	.	+	0	Parent=Os04t0510200-01
Chr04	irgsp1_rep	CDS	25530524	25530573	.	+	2	Parent=Os04t0510200-01
Chr04	irgsp1_rep	CDS	25530659	25530961	.	+	0	Parent=Os04t0510200-01
Chr04	irgsp1_rep	CDS	25531045	25531117	.	+	0	Parent=Os04t0510200-01
Chr04	irgsp1_rep	mRNA	25533649	25534892	.	+	.	ID=Os04t0510300-01;Name=Os04t0510300-01;Locus_id=Os04g0510300;Note=Transcriptional corepressor LEUNIG.;Transcript_evidence=AK105129 (DDBJ%2C Best hit);ORF_evidence=Q01HE9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=001-101-E12;TENOR=Os04t0510300-01;KEGG=Os04t0510300-01
Chr04	irgsp1_rep	five_prime_UTR	25533649	25533649	.	+	.	Parent=Os04t0510300-01
Chr04	irgsp1_rep	CDS	25533650	25533685	.	+	0	Parent=Os04t0510300-01
Chr04	irgsp1_rep	CDS	25533846	25534043	.	+	0	Parent=Os04t0510300-01
Chr04	irgsp1_rep	CDS	25534378	25534521	.	+	0	Parent=Os04t0510300-01
Chr04	irgsp1_rep	three_prime_UTR	25534522	25534892	.	+	.	Parent=Os04t0510300-01
Chr04	irgsp1_rep	mRNA	25535365	25541426	.	-	.	ID=Os04t0510400-01;Name=Os04t0510400-01;Locus_id=Os04g0510400;Oryzabase Gene Symbol Synonym(s)=OsRH13;Oryzabase Gene Name Synonym(s)=RNA helicase 13;Note=Similar to RNA helicase (Fragment).;Transcript_evidence=AK072655 (DDBJ%2C Best hit);ORF_evidence=A2XVF7 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=RNA helicase%2C ATP-dependent%2C DEAD-box%2C conserved site (IPR000629),Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=J023134D07;Oryzabase=19131;Expression=AK072655;TENOR=Os04t0510400-01;KEGG=Os04t0510400-01
Chr04	irgsp1_rep	five_prime_UTR	25541375	25541426	.	-	.	Parent=Os04t0510400-01
Chr04	irgsp1_rep	CDS	25541161	25541374	.	-	0	Parent=Os04t0510400-01
Chr04	irgsp1_rep	CDS	25540761	25541069	.	-	2	Parent=Os04t0510400-01
Chr04	irgsp1_rep	CDS	25540413	25540600	.	-	2	Parent=Os04t0510400-01
Chr04	irgsp1_rep	CDS	25539875	25540069	.	-	0	Parent=Os04t0510400-01
Chr04	irgsp1_rep	CDS	25539528	25539704	.	-	0	Parent=Os04t0510400-01
Chr04	irgsp1_rep	CDS	25538547	25538935	.	-	0	Parent=Os04t0510400-01
Chr04	irgsp1_rep	CDS	25538254	25538434	.	-	1	Parent=Os04t0510400-01
Chr04	irgsp1_rep	CDS	25537665	25537787	.	-	0	Parent=Os04t0510400-01
Chr04	irgsp1_rep	CDS	25537456	25537572	.	-	0	Parent=Os04t0510400-01
Chr04	irgsp1_rep	CDS	25536726	25536831	.	-	0	Parent=Os04t0510400-01
Chr04	irgsp1_rep	CDS	25536467	25536606	.	-	2	Parent=Os04t0510400-01
Chr04	irgsp1_rep	CDS	25536271	25536336	.	-	0	Parent=Os04t0510400-01
Chr04	irgsp1_rep	CDS	25536022	25536180	.	-	0	Parent=Os04t0510400-01
Chr04	irgsp1_rep	CDS	25535814	25535895	.	-	0	Parent=Os04t0510400-01
Chr04	irgsp1_rep	CDS	25535521	25535573	.	-	2	Parent=Os04t0510400-01
Chr04	irgsp1_rep	three_prime_UTR	25535365	25535520	.	-	.	Parent=Os04t0510400-01
Chr04	irgsp1_rep	mRNA	25535409	25538352	.	-	.	ID=Os04t0510400-02;Name=Os04t0510400-02;Locus_id=Os04g0510400;Oryzabase Gene Symbol Synonym(s)=OsRH13;Oryzabase Gene Name Synonym(s)=RNA helicase 13;Note=Similar to DEAD-box ATP-dependent RNA helicase 13.;Transcript_evidence=AK103972 (DDBJ%2C Best hit);ORF_evidence=A2XVF7 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524);InterPro=Helicase%2C C-terminal (IPR001650);NIAS_FLcDNA=001-016-C11;Oryzabase=19131;Expression=AK103972;TENOR=Os04t0510400-02;KEGG=Os04t0510400-02
Chr04	irgsp1_rep	CDS	25538254	25538352	.	-	0	Parent=Os04t0510400-02
Chr04	irgsp1_rep	CDS	25537665	25537787	.	-	0	Parent=Os04t0510400-02
Chr04	irgsp1_rep	CDS	25537456	25537572	.	-	0	Parent=Os04t0510400-02
Chr04	irgsp1_rep	CDS	25536726	25536831	.	-	0	Parent=Os04t0510400-02
Chr04	irgsp1_rep	CDS	25536467	25536606	.	-	2	Parent=Os04t0510400-02
Chr04	irgsp1_rep	CDS	25536271	25536336	.	-	0	Parent=Os04t0510400-02
Chr04	irgsp1_rep	CDS	25536022	25536180	.	-	0	Parent=Os04t0510400-02
Chr04	irgsp1_rep	CDS	25535814	25535895	.	-	0	Parent=Os04t0510400-02
Chr04	irgsp1_rep	CDS	25535521	25535573	.	-	2	Parent=Os04t0510400-02
Chr04	irgsp1_rep	three_prime_UTR	25535409	25535520	.	-	.	Parent=Os04t0510400-02
Chr04	irgsp1_rep	mRNA	25543329	25548790	.	+	.	ID=Os04t0510500-01;Name=Os04t0510500-01;Locus_id=Os04g0510500;Note=Similar to OSIGBa0157K09-H0214G12.10 protein.;Transcript_evidence=AK242964 (DDBJ%2C Best hit);ORF_evidence=Q01HE7 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: intracellular (GO:0005622),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nuclear transport factor 2 (IPR002075),Nucleotide-binding%2C alpha-beta plait (IPR012677),Nuclear transport factor 2%2C Eukaryote (IPR018222);NIAS_FLcDNA=J090090L16;TENOR=Os04t0510500-01;KEGG=Os04t0510500-01
Chr04	irgsp1_rep	five_prime_UTR	25543329	25543619	.	+	.	Parent=Os04t0510500-01
Chr04	irgsp1_rep	CDS	25543620	25543721	.	+	0	Parent=Os04t0510500-01
Chr04	irgsp1_rep	CDS	25543811	25543951	.	+	0	Parent=Os04t0510500-01
Chr04	irgsp1_rep	CDS	25544772	25545075	.	+	0	Parent=Os04t0510500-01
Chr04	irgsp1_rep	CDS	25545582	25545874	.	+	2	Parent=Os04t0510500-01
Chr04	irgsp1_rep	CDS	25545970	25546144	.	+	0	Parent=Os04t0510500-01
Chr04	irgsp1_rep	CDS	25547079	25547200	.	+	2	Parent=Os04t0510500-01
Chr04	irgsp1_rep	CDS	25547294	25547359	.	+	0	Parent=Os04t0510500-01
Chr04	irgsp1_rep	CDS	25547844	25547919	.	+	0	Parent=Os04t0510500-01
Chr04	irgsp1_rep	CDS	25548382	25548491	.	+	2	Parent=Os04t0510500-01
Chr04	irgsp1_rep	three_prime_UTR	25548492	25548790	.	+	.	Parent=Os04t0510500-01
Chr04	irgsp1_rep	mRNA	25549282	25550600	.	-	.	ID=Os04t0510600-01;Name=Os04t0510600-01;Locus_id=Os04g0510600;Oryzabase Gene Symbol Synonym(s)=OsEnS-67;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 67;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK102048 (DDBJ%2C Best hit),AK107251 (DDBJ%2C Best hit);ORF_evidence=Q01HE6 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026);NIAS_FLcDNA=J033082A10,002-125-G03;Oryzabase=18389;Expression=AK102048;TENOR=Os04t0510600-01;KEGG=Os04t0510600-01
Chr04	irgsp1_rep	five_prime_UTR	25550541	25550600	.	-	.	Parent=Os04t0510600-01
Chr04	irgsp1_rep	CDS	25550019	25550540	.	-	0	Parent=Os04t0510600-01
Chr04	irgsp1_rep	CDS	25549707	25549879	.	-	0	Parent=Os04t0510600-01
Chr04	irgsp1_rep	CDS	25549431	25549569	.	-	1	Parent=Os04t0510600-01
Chr04	irgsp1_rep	three_prime_UTR	25549282	25549430	.	-	.	Parent=Os04t0510600-01
Chr04	irgsp1_rep	mRNA	25549316	25550551	.	-	.	ID=Os04t0510600-03;Name=Os04t0510600-03;Locus_id=Os04g0510600;Oryzabase Gene Symbol Synonym(s)=OsEnS-67;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 67;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK061055 (DDBJ%2C Best hit),AK060650 (DDBJ%2C Best hit);ORF_evidence=Q01HE6 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026);NIAS_FLcDNA=006-205-H02,001-027-H03;Oryzabase=18389;Expression=AK061055;TENOR=Os04t0510600-03;KEGG=Os04t0510600-03
Chr04	irgsp1_rep	five_prime_UTR	25550541	25550551	.	-	.	Parent=Os04t0510600-03
Chr04	irgsp1_rep	CDS	25550019	25550540	.	-	0	Parent=Os04t0510600-03
Chr04	irgsp1_rep	CDS	25549707	25549879	.	-	0	Parent=Os04t0510600-03
Chr04	irgsp1_rep	CDS	25549431	25549569	.	-	1	Parent=Os04t0510600-03
Chr04	irgsp1_rep	three_prime_UTR	25549316	25549430	.	-	.	Parent=Os04t0510600-03
Chr04	irgsp1_rep	mRNA	25551194	25553800	.	-	.	ID=Os04t0510700-01;Name=Os04t0510700-01;Locus_id=Os04g0510700;Note=Similar to OSIGBa0157K09-H0214G12.12 protein.;Transcript_evidence=AK240708 (DDBJ%2C Best hit);ORF_evidence=Q01HE5 (UniProt);NIAS_FLcDNA=J043021C19;TENOR=Os04t0510700-01;KEGG=Os04t0510700-01
Chr04	irgsp1_rep	five_prime_UTR	25553728	25553800	.	-	.	Parent=Os04t0510700-01
Chr04	irgsp1_rep	CDS	25553479	25553727	.	-	0	Parent=Os04t0510700-01
Chr04	irgsp1_rep	CDS	25552824	25553052	.	-	0	Parent=Os04t0510700-01
Chr04	irgsp1_rep	CDS	25552305	25552457	.	-	2	Parent=Os04t0510700-01
Chr04	irgsp1_rep	CDS	25551322	25551995	.	-	2	Parent=Os04t0510700-01
Chr04	irgsp1_rep	three_prime_UTR	25551194	25551321	.	-	.	Parent=Os04t0510700-01
Chr04	irgsp1_rep	mRNA	25554772	25556458	.	-	.	ID=Os04t0510900-01;Name=Os04t0510900-01;Locus_id=Os04g0510900;Oryzabase Gene Symbol Synonym(s)=OsEnS-68;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 68;Note=Similar to Embryo-specific protein 1 (ATS1).;Transcript_evidence=AK063625 (DDBJ%2C Best hit);ORF_evidence=Q01HE4 (UniProt);InterPro=Caleosin (IPR007736);NIAS_FLcDNA=001-118-E12;Oryzabase=18390;Expression=AK063625;TENOR=Os04t0510900-01;KEGG=Os04t0510900-01
Chr04	irgsp1_rep	five_prime_UTR	25556458	25556458	.	-	.	Parent=Os04t0510900-01
Chr04	irgsp1_rep	CDS	25556245	25556457	.	-	0	Parent=Os04t0510900-01
Chr04	irgsp1_rep	CDS	25556092	25556197	.	-	0	Parent=Os04t0510900-01
Chr04	irgsp1_rep	CDS	25555822	25555977	.	-	2	Parent=Os04t0510900-01
Chr04	irgsp1_rep	CDS	25555631	25555716	.	-	2	Parent=Os04t0510900-01
Chr04	irgsp1_rep	CDS	25555456	25555550	.	-	0	Parent=Os04t0510900-01
Chr04	irgsp1_rep	CDS	25555250	25555375	.	-	1	Parent=Os04t0510900-01
Chr04	irgsp1_rep	CDS	25554988	25555138	.	-	1	Parent=Os04t0510900-01
Chr04	irgsp1_rep	three_prime_UTR	25554772	25554987	.	-	.	Parent=Os04t0510900-01
Chr04	irgsp1_rep	mRNA	25563419	25565153	.	-	.	ID=Os04t0511200-01;Name=Os04t0511200-01;Locus_id=Os04g0511200;Oryzabase Gene Symbol Synonym(s)=EFA27;Oryzabase Gene Name Synonym(s)="EF-hand%2C abscisic acid responsive 27-kDa protein". C18 hydroxylase;Note=EFA27 for EF hand%2C abscisic acid%2C 27kD.;Transcript_evidence=AK243204 (DDBJ%2C Best hit);ORF_evidence=Q40679 (UniProt);InterPro=Caleosin (IPR007736);NIAS_FLcDNA=J100041H02;Oryzabase=13763;TENOR=Os04t0511200-01;KEGG=Os04t0511200-01
Chr04	irgsp1_rep	five_prime_UTR	25565072	25565153	.	-	.	Parent=Os04t0511200-01
Chr04	irgsp1_rep	CDS	25564948	25565071	.	-	0	Parent=Os04t0511200-01
Chr04	irgsp1_rep	CDS	25564697	25564846	.	-	2	Parent=Os04t0511200-01
Chr04	irgsp1_rep	CDS	25564360	25564445	.	-	2	Parent=Os04t0511200-01
Chr04	irgsp1_rep	CDS	25564162	25564256	.	-	0	Parent=Os04t0511200-01
Chr04	irgsp1_rep	CDS	25563928	25564053	.	-	1	Parent=Os04t0511200-01
Chr04	irgsp1_rep	CDS	25563637	25563790	.	-	1	Parent=Os04t0511200-01
Chr04	irgsp1_rep	three_prime_UTR	25563419	25563636	.	-	.	Parent=Os04t0511200-01
Chr04	irgsp1_rep	mRNA	25567729	25571329	.	-	.	ID=Os04t0511400-01;Name=Os04t0511400-01;Locus_id=Os04g0511400;Note=Sugar/inositol transporter domain containing protein.;Transcript_evidence=AK072430 (DDBJ%2C Best hit);ORF_evidence=Q01HE1 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J023092M07;Expression=AK072430;TENOR=Os04t0511400-01;KEGG=Os04t0511400-01
Chr04	irgsp1_rep	five_prime_UTR	25571193	25571329	.	-	.	Parent=Os04t0511400-01
Chr04	irgsp1_rep	five_prime_UTR	25570395	25570469	.	-	.	Parent=Os04t0511400-01
Chr04	irgsp1_rep	CDS	25570262	25570394	.	-	0	Parent=Os04t0511400-01
Chr04	irgsp1_rep	CDS	25569961	25570031	.	-	2	Parent=Os04t0511400-01
Chr04	irgsp1_rep	CDS	25569495	25569830	.	-	0	Parent=Os04t0511400-01
Chr04	irgsp1_rep	CDS	25569300	25569407	.	-	0	Parent=Os04t0511400-01
Chr04	irgsp1_rep	CDS	25568503	25569105	.	-	0	Parent=Os04t0511400-01
Chr04	irgsp1_rep	CDS	25567925	25568419	.	-	0	Parent=Os04t0511400-01
Chr04	irgsp1_rep	three_prime_UTR	25567729	25567924	.	-	.	Parent=Os04t0511400-01
Chr04	irgsp1_rep	mRNA	25567723	25571247	.	-	.	ID=Os04t0511400-02;Name=Os04t0511400-02;Locus_id=Os04g0511400;Note=Sugar/inositol transporter domain containing protein.;Transcript_evidence=AK070476 (DDBJ%2C Best hit);ORF_evidence=Q01HE1 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J023054A07;Expression=AK070476;TENOR=Os04t0511400-02;KEGG=Os04t0511400-02
Chr04	irgsp1_rep	five_prime_UTR	25570751	25571247	.	-	.	Parent=Os04t0511400-02
Chr04	irgsp1_rep	five_prime_UTR	25570395	25570406	.	-	.	Parent=Os04t0511400-02
Chr04	irgsp1_rep	CDS	25570262	25570394	.	-	0	Parent=Os04t0511400-02
Chr04	irgsp1_rep	CDS	25569961	25570031	.	-	2	Parent=Os04t0511400-02
Chr04	irgsp1_rep	CDS	25569495	25569830	.	-	0	Parent=Os04t0511400-02
Chr04	irgsp1_rep	CDS	25569300	25569407	.	-	0	Parent=Os04t0511400-02
Chr04	irgsp1_rep	CDS	25568503	25569105	.	-	0	Parent=Os04t0511400-02
Chr04	irgsp1_rep	CDS	25567925	25568419	.	-	0	Parent=Os04t0511400-02
Chr04	irgsp1_rep	three_prime_UTR	25567723	25567924	.	-	.	Parent=Os04t0511400-02
Chr04	irgsp1_rep	mRNA	25568067	25568902	.	+	.	ID=Os04t0511500-00;Name=Os04t0511500-00;Locus_id=Os04g0511500;Note=Hypothetical protein.;Transcript_evidence=EU940776 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0511500-00
Chr04	irgsp1_rep	five_prime_UTR	25568067	25568068	.	+	.	Parent=Os04t0511500-00
Chr04	irgsp1_rep	CDS	25568069	25568344	.	+	0	Parent=Os04t0511500-00
Chr04	irgsp1_rep	CDS	25568626	25568902	.	+	0	Parent=Os04t0511500-00
Chr04	irgsp1_rep	mRNA	25573704	25579677	.	-	.	ID=Os04t0511600-01;Name=Os04t0511600-01;Locus_id=Os04g0511600;CGSNL Gene Symbol=DLN115;Oryzabase Gene Symbol Synonym(s)=OsRFP%2C OsDLN115;Oryzabase Gene Name Synonym(s)=RING finger protein%2C DLN repressor 115%2C DLN motif protein 115;Note=Similar to RING-H2 finger protein ATL3G.;Transcript_evidence=AK073609 (DDBJ%2C Best hit);ORF_evidence=Q01HE0 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J033048J15;Oryzabase=21154;Expression=AK073609;TENOR=Os04t0511600-01;KEGG=Os04t0511600-01
Chr04	irgsp1_rep	five_prime_UTR	25579465	25579677	.	-	.	Parent=Os04t0511600-01
Chr04	irgsp1_rep	five_prime_UTR	25578203	25578289	.	-	.	Parent=Os04t0511600-01
Chr04	irgsp1_rep	CDS	25577118	25578202	.	-	0	Parent=Os04t0511600-01
Chr04	irgsp1_rep	CDS	25576080	25576704	.	-	1	Parent=Os04t0511600-01
Chr04	irgsp1_rep	CDS	25575913	25575999	.	-	0	Parent=Os04t0511600-01
Chr04	irgsp1_rep	CDS	25575453	25575539	.	-	0	Parent=Os04t0511600-01
Chr04	irgsp1_rep	CDS	25574724	25574773	.	-	0	Parent=Os04t0511600-01
Chr04	irgsp1_rep	CDS	25574337	25574436	.	-	1	Parent=Os04t0511600-01
Chr04	irgsp1_rep	CDS	25574147	25574242	.	-	0	Parent=Os04t0511600-01
Chr04	irgsp1_rep	CDS	25573963	25574025	.	-	0	Parent=Os04t0511600-01
Chr04	irgsp1_rep	three_prime_UTR	25573704	25573962	.	-	.	Parent=Os04t0511600-01
Chr04	irgsp1_rep	mRNA	25573704	25579436	.	-	.	ID=Os04t0511600-02;Name=Os04t0511600-02;Locus_id=Os04g0511600;CGSNL Gene Symbol=DLN115;Oryzabase Gene Symbol Synonym(s)=OsRFP%2C OsDLN115;Oryzabase Gene Name Synonym(s)=RING finger protein%2C DLN repressor 115%2C DLN motif protein 115;Note=Similar to OSIGBa0157K09-H0214G12.17 protein.;Transcript_evidence=AK067002 (DDBJ%2C Best hit);ORF_evidence=Q01HE0 (UniProt);NIAS_FLcDNA=J013091B14;Oryzabase=21154;Expression=AK067002;TENOR=Os04t0511600-02;KEGG=Os04t0511600-02
Chr04	irgsp1_rep	five_prime_UTR	25578203	25579436	.	-	.	Parent=Os04t0511600-02
Chr04	irgsp1_rep	CDS	25577118	25578202	.	-	0	Parent=Os04t0511600-02
Chr04	irgsp1_rep	CDS	25576080	25576704	.	-	1	Parent=Os04t0511600-02
Chr04	irgsp1_rep	CDS	25575913	25575999	.	-	0	Parent=Os04t0511600-02
Chr04	irgsp1_rep	CDS	25575453	25575539	.	-	0	Parent=Os04t0511600-02
Chr04	irgsp1_rep	CDS	25574733	25574759	.	-	0	Parent=Os04t0511600-02
Chr04	irgsp1_rep	three_prime_UTR	25574724	25574732	.	-	.	Parent=Os04t0511600-02
Chr04	irgsp1_rep	three_prime_UTR	25574337	25574436	.	-	.	Parent=Os04t0511600-02
Chr04	irgsp1_rep	three_prime_UTR	25574147	25574242	.	-	.	Parent=Os04t0511600-02
Chr04	irgsp1_rep	three_prime_UTR	25573704	25574025	.	-	.	Parent=Os04t0511600-02
Chr04	irgsp1_rep	mRNA	25580949	25583094	.	-	.	ID=Os04t0511700-01;Name=Os04t0511700-01;Locus_id=Os04g0511700;Note=Similar to OSIGBa0157K09-H0214G12.18 protein.;Transcript_evidence=AK102761 (DDBJ%2C Best hit);ORF_evidence=Q01HD9 (UniProt);NIAS_FLcDNA=J033107C20;Expression=AK102761;TENOR=Os04t0511700-01;KEGG=Os04t0511700-01
Chr04	irgsp1_rep	five_prime_UTR	25583094	25583094	.	-	.	Parent=Os04t0511700-01
Chr04	irgsp1_rep	CDS	25583001	25583093	.	-	0	Parent=Os04t0511700-01
Chr04	irgsp1_rep	CDS	25582732	25582901	.	-	0	Parent=Os04t0511700-01
Chr04	irgsp1_rep	CDS	25582292	25582417	.	-	1	Parent=Os04t0511700-01
Chr04	irgsp1_rep	CDS	25581209	25582214	.	-	1	Parent=Os04t0511700-01
Chr04	irgsp1_rep	three_prime_UTR	25580949	25581208	.	-	.	Parent=Os04t0511700-01
Chr04	irgsp1_rep	mRNA	25598959	25606215	.	-	.	ID=Os04t0512200-01;Name=Os04t0512200-01;Locus_id=Os04g0512200;Note=CER1.;Transcript_evidence=AK240690 (DDBJ%2C Best hit);ORF_evidence=B5L347 (UniProt);NIAS_FLcDNA=J043005G13;TENOR=Os04t0512200-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	25606149	25606215	.	-	.	Parent=Os04t0512200-01
Chr04	irgsp1_rep	CDS	25606089	25606148	.	-	0	Parent=Os04t0512200-01
Chr04	irgsp1_rep	CDS	25604801	25605041	.	-	0	Parent=Os04t0512200-01
Chr04	irgsp1_rep	CDS	25604675	25604694	.	-	2	Parent=Os04t0512200-01
Chr04	irgsp1_rep	three_prime_UTR	25604462	25604674	.	-	.	Parent=Os04t0512200-01
Chr04	irgsp1_rep	three_prime_UTR	25601957	25602338	.	-	.	Parent=Os04t0512200-01
Chr04	irgsp1_rep	three_prime_UTR	25601521	25601631	.	-	.	Parent=Os04t0512200-01
Chr04	irgsp1_rep	three_prime_UTR	25601020	25601217	.	-	.	Parent=Os04t0512200-01
Chr04	irgsp1_rep	three_prime_UTR	25600772	25600870	.	-	.	Parent=Os04t0512200-01
Chr04	irgsp1_rep	three_prime_UTR	25599766	25599933	.	-	.	Parent=Os04t0512200-01
Chr04	irgsp1_rep	three_prime_UTR	25598959	25599660	.	-	.	Parent=Os04t0512200-01
Chr04	irgsp1_rep	mRNA	25599743	25599974	.	+	.	ID=Os04t0512225-00;Name=Os04t0512225-00;Locus_id=Os04g0512225;Note=Non-protein coding transcript.;Transcript_evidence=FP092318 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0512225-00
Chr04	irgsp1_rep	exon	25599743	25599974	.	+	.	Parent=Os04t0512225-00
Chr04	irgsp1_rep	mRNA	25605269	25609281	.	+	.	ID=Os04t0512250-01;Name=Os04t0512250-01;Locus_id=Os04g0512250;Note=Hypothetical gene.;Transcript_evidence=AK288761 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090067C10;TENOR=Os04t0512250-01;KEGG=Os04t0512250-01
Chr04	irgsp1_rep	five_prime_UTR	25605269	25605617	.	+	.	Parent=Os04t0512250-01
Chr04	irgsp1_rep	CDS	25605618	25605854	.	+	0	Parent=Os04t0512250-01
Chr04	irgsp1_rep	three_prime_UTR	25605855	25609281	.	+	.	Parent=Os04t0512250-01
Chr04	irgsp1_rep	mRNA	25608241	25611089	.	-	.	ID=Os04t0512300-01;Name=Os04t0512300-01;Locus_id=Os04g0512300;Note=Arp2/3 complex%2C 34kDa subunit p34-Arc family protein.;Transcript_evidence=AK071791 (DDBJ%2C Best hit);ORF_evidence=Q01HD5 (UniProt);GO=Biological Process: regulation of actin filament polymerization (GO:0030833),Cellular Component: cytoskeleton (GO:0005856);InterPro=Arp2/3 complex%2C 34kDa subunit p34-Arc (IPR007188);NIAS_FLcDNA=J023114E05;Expression=AK071791;TENOR=Os04t0512300-01;KEGG=Os04t0512300-01
Chr04	irgsp1_rep	five_prime_UTR	25611070	25611089	.	-	.	Parent=Os04t0512300-01
Chr04	irgsp1_rep	CDS	25611011	25611069	.	-	0	Parent=Os04t0512300-01
Chr04	irgsp1_rep	CDS	25610724	25610790	.	-	1	Parent=Os04t0512300-01
Chr04	irgsp1_rep	CDS	25610374	25610581	.	-	0	Parent=Os04t0512300-01
Chr04	irgsp1_rep	CDS	25610101	25610246	.	-	2	Parent=Os04t0512300-01
Chr04	irgsp1_rep	CDS	25609927	25610004	.	-	0	Parent=Os04t0512300-01
Chr04	irgsp1_rep	CDS	25609718	25609850	.	-	0	Parent=Os04t0512300-01
Chr04	irgsp1_rep	CDS	25609244	25609335	.	-	2	Parent=Os04t0512300-01
Chr04	irgsp1_rep	CDS	25609073	25609129	.	-	0	Parent=Os04t0512300-01
Chr04	irgsp1_rep	CDS	25608936	25608990	.	-	0	Parent=Os04t0512300-01
Chr04	irgsp1_rep	CDS	25608642	25608853	.	-	2	Parent=Os04t0512300-01
Chr04	irgsp1_rep	three_prime_UTR	25608241	25608641	.	-	.	Parent=Os04t0512300-01
Chr04	irgsp1_rep	mRNA	25611673	25615824	.	-	.	ID=Os04t0512400-01;Name=Os04t0512400-01;Locus_id=Os04g0512400;Oryzabase Gene Symbol Synonym(s)=OsRFPHC-12%2C RFPHC-12%2C DLN116%2C OsDLN116;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPHC-12%2C RING-HC protein 12%2C DLN repressor 116%2C DLN motif protein 116;Note=Similar to Midline 1 protein (Tripartite motif protein 18).;Transcript_evidence=AK103203 (DDBJ%2C Best hit);ORF_evidence=Q01HD4 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=BRCT (IPR001357),Zinc finger%2C RING-type (IPR001841),Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J033122C24;Oryzabase=11795;Expression=AK103203;TENOR=Os04t0512400-01;KEGG=Os04t0512400-01
Chr04	irgsp1_rep	five_prime_UTR	25615442	25615824	.	-	.	Parent=Os04t0512400-01
Chr04	irgsp1_rep	CDS	25615362	25615441	.	-	0	Parent=Os04t0512400-01
Chr04	irgsp1_rep	CDS	25615094	25615147	.	-	1	Parent=Os04t0512400-01
Chr04	irgsp1_rep	CDS	25614939	25615009	.	-	1	Parent=Os04t0512400-01
Chr04	irgsp1_rep	CDS	25614751	25614858	.	-	2	Parent=Os04t0512400-01
Chr04	irgsp1_rep	CDS	25614324	25614622	.	-	2	Parent=Os04t0512400-01
Chr04	irgsp1_rep	CDS	25614032	25614137	.	-	0	Parent=Os04t0512400-01
Chr04	irgsp1_rep	CDS	25613888	25613949	.	-	2	Parent=Os04t0512400-01
Chr04	irgsp1_rep	CDS	25613683	25613783	.	-	0	Parent=Os04t0512400-01
Chr04	irgsp1_rep	CDS	25613309	25613495	.	-	1	Parent=Os04t0512400-01
Chr04	irgsp1_rep	CDS	25613097	25613188	.	-	0	Parent=Os04t0512400-01
Chr04	irgsp1_rep	CDS	25612865	25612997	.	-	1	Parent=Os04t0512400-01
Chr04	irgsp1_rep	CDS	25612599	25612764	.	-	0	Parent=Os04t0512400-01
Chr04	irgsp1_rep	CDS	25612197	25612315	.	-	2	Parent=Os04t0512400-01
Chr04	irgsp1_rep	CDS	25611799	25612110	.	-	0	Parent=Os04t0512400-01
Chr04	irgsp1_rep	three_prime_UTR	25611673	25611798	.	-	.	Parent=Os04t0512400-01
Chr04	irgsp1_rep	mRNA	25618621	25619338	.	-	.	ID=Os04t0512500-01;Name=Os04t0512500-01;Locus_id=Os04g0512500;Note=Similar to OSIGBa0157K09-H0214G12.24 protein.;Transcript_evidence=AK107826 (DDBJ%2C Best hit);ORF_evidence=Q01HD3 (UniProt);NIAS_FLcDNA=002-133-G07;Expression=AK107826;TENOR=Os04t0512500-01;KEGG=Os04t0512500-01
Chr04	irgsp1_rep	five_prime_UTR	25619279	25619338	.	-	.	Parent=Os04t0512500-01
Chr04	irgsp1_rep	CDS	25618883	25619278	.	-	0	Parent=Os04t0512500-01
Chr04	irgsp1_rep	three_prime_UTR	25618621	25618882	.	-	.	Parent=Os04t0512500-01
Chr04	irgsp1_rep	mRNA	25633375	25636818	.	-	.	ID=Os04t0512900-01;Name=Os04t0512900-01;Locus_id=Os04g0512900;Note=NB-ARC domain containing protein.;Transcript_evidence=AK067204 (DDBJ%2C Best hit);ORF_evidence=Q7XPY8 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013096P20;TENOR=Os04t0512900-01
Chr04	irgsp1_rep	five_prime_UTR	25636769	25636818	.	-	.	Parent=Os04t0512900-01
Chr04	irgsp1_rep	CDS	25635264	25636768	.	-	0	Parent=Os04t0512900-01
Chr04	irgsp1_rep	CDS	25633375	25634123	.	-	1	Parent=Os04t0512900-01
Chr04	irgsp1_rep	mRNA	25637107	25638732	.	+	.	ID=Os04t0513000-01;Name=Os04t0513000-01;Locus_id=Os04g0513000;Note=Conserved hypothetical protein.;Transcript_evidence=AK102028 (DDBJ%2C Best hit);ORF_evidence=B9FG47 (UniProt);NIAS_FLcDNA=J033080N15;Expression=AK102028;TENOR=Os04t0513000-01;KEGG=Os04t0513000-01
Chr04	irgsp1_rep	five_prime_UTR	25637107	25637108	.	+	.	Parent=Os04t0513000-01
Chr04	irgsp1_rep	CDS	25637109	25637188	.	+	0	Parent=Os04t0513000-01
Chr04	irgsp1_rep	CDS	25637335	25637441	.	+	1	Parent=Os04t0513000-01
Chr04	irgsp1_rep	CDS	25637547	25637701	.	+	2	Parent=Os04t0513000-01
Chr04	irgsp1_rep	CDS	25638398	25638559	.	+	0	Parent=Os04t0513000-01
Chr04	irgsp1_rep	three_prime_UTR	25638560	25638732	.	+	.	Parent=Os04t0513000-01
Chr04	irgsp1_rep	mRNA	25640333	25644606	.	-	.	ID=Os04t0513100-01;Name=Os04t0513100-01;Locus_id=Os04g0513100;RAP-DB Gene Symbol Synonym(s)=Os4BGlu14;RAP-DB Gene Name Synonym(s)=beta-Glucosidase 14%2C &beta%3B-Glucosidase 14;CGSNL Gene Symbol=BGLU14;CGSNL Gene Name=BETA-GLUCOSIDASE 14;Oryzabase Gene Symbol Synonym(s)=Os4bglu14%2C Os4Bglu14%2C Os4BGlu14;Oryzabase Gene Name Synonym(s)=beta-glucosidase 14;Note=Monolignol &beta%3B-glucosidase%2C Regulation of seed longevity;Transcript_evidence=AK067841;ORF_evidence=Q7XPY7;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase superfamily (IPR017853),Glycoside hydrolase family 1 (IPR001360),Glycosyl hydrolases family 1%2C N-terminal conserved site (IPR033132);NIAS_FLcDNA=J013128A11;Manual Curation=August 25%2C 2020;Literature_PMID=32833149;Oryzabase=12087;Expression=AK067841;TENOR=Os04t0513100-01;KEGG=Os04t0513100-01
Chr04	irgsp1_rep	five_prime_UTR	25644362	25644606	.	-	.	Parent=Os04t0513100-01
Chr04	irgsp1_rep	CDS	25644232	25644361	.	-	0	Parent=Os04t0513100-01
Chr04	irgsp1_rep	CDS	25644098	25644163	.	-	2	Parent=Os04t0513100-01
Chr04	irgsp1_rep	CDS	25643886	25643944	.	-	2	Parent=Os04t0513100-01
Chr04	irgsp1_rep	CDS	25643635	25643710	.	-	0	Parent=Os04t0513100-01
Chr04	irgsp1_rep	CDS	25643490	25643564	.	-	2	Parent=Os04t0513100-01
Chr04	irgsp1_rep	CDS	25643306	25643393	.	-	2	Parent=Os04t0513100-01
Chr04	irgsp1_rep	CDS	25642980	25643232	.	-	1	Parent=Os04t0513100-01
Chr04	irgsp1_rep	CDS	25642697	25642812	.	-	0	Parent=Os04t0513100-01
Chr04	irgsp1_rep	CDS	25642134	25642386	.	-	1	Parent=Os04t0513100-01
Chr04	irgsp1_rep	CDS	25641937	25642039	.	-	0	Parent=Os04t0513100-01
Chr04	irgsp1_rep	CDS	25640839	25640947	.	-	2	Parent=Os04t0513100-01
Chr04	irgsp1_rep	CDS	25640497	25640719	.	-	1	Parent=Os04t0513100-01
Chr04	irgsp1_rep	three_prime_UTR	25640333	25640496	.	-	.	Parent=Os04t0513100-01
Chr04	irgsp1_rep	mRNA	25640500	25643235	.	+	.	ID=Os04t0513200-00;Name=Os04t0513200-00;Locus_id=Os04g0513200;Note=Hypothetical protein.;Transcript_evidence=tplb0059k05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0513200-00
Chr04	irgsp1_rep	five_prime_UTR	25640500	25640765	.	+	.	Parent=Os04t0513200-00
Chr04	irgsp1_rep	CDS	25640766	25640789	.	+	0	Parent=Os04t0513200-00
Chr04	irgsp1_rep	CDS	25641908	25642015	.	+	0	Parent=Os04t0513200-00
Chr04	irgsp1_rep	CDS	25642111	25642239	.	+	0	Parent=Os04t0513200-00
Chr04	irgsp1_rep	three_prime_UTR	25642240	25642410	.	+	.	Parent=Os04t0513200-00
Chr04	irgsp1_rep	three_prime_UTR	25642719	25642805	.	+	.	Parent=Os04t0513200-00
Chr04	irgsp1_rep	three_prime_UTR	25642971	25643235	.	+	.	Parent=Os04t0513200-00
Chr04	irgsp1_rep	mRNA	25646120	25647068	.	-	.	ID=Os04t0513301-00;Name=Os04t0513301-00;Locus_id=Os04g0513301;Note=Similar to Pectinesterase.;Transcript_evidence=tplb0030j03 (Wheat FLcDNA);ORF_evidence=A2XHP1 (UniProt);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);TENOR=Os04t0513301-00
Chr04	irgsp1_rep	five_prime_UTR	25646950	25647068	.	-	.	Parent=Os04t0513301-00
Chr04	irgsp1_rep	CDS	25646574	25646949	.	-	0	Parent=Os04t0513301-00
Chr04	irgsp1_rep	CDS	25646120	25646496	.	-	2	Parent=Os04t0513301-00
Chr04	irgsp1_rep	mRNA	25658339	25667057	.	+	.	ID=Os04t0513400-01;Name=Os04t0513400-01;Locus_id=Os04g0513400;CGSNL Gene Symbol=BGLU16;CGSNL Gene Name=BETA-GLUCOSIDASE 16;Oryzabase Gene Symbol Synonym(s)=Os4bglu16%2C Os4Bglu16%2C Os4BGlu16;Oryzabase Gene Name Synonym(s)=beta-glucosidase 16;Note=Similar to Beta-glucosidase.;Transcript_evidence=AK068772 (DDBJ%2C Best hit);ORF_evidence=Q7XSK2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 1%2C active site (IPR018120);NIAS_FLcDNA=J013164L07;Oryzabase=12089;Expression=AK068772;TENOR=Os04t0513400-01;KEGG=Os04t0513400-01
Chr04	irgsp1_rep	five_prime_UTR	25658339	25658401	.	+	.	Parent=Os04t0513400-01
Chr04	irgsp1_rep	CDS	25658402	25658542	.	+	0	Parent=Os04t0513400-01
Chr04	irgsp1_rep	CDS	25658664	25658730	.	+	0	Parent=Os04t0513400-01
Chr04	irgsp1_rep	CDS	25661563	25661624	.	+	2	Parent=Os04t0513400-01
Chr04	irgsp1_rep	CDS	25662743	25662818	.	+	0	Parent=Os04t0513400-01
Chr04	irgsp1_rep	CDS	25662925	25662999	.	+	2	Parent=Os04t0513400-01
Chr04	irgsp1_rep	CDS	25664338	25664425	.	+	2	Parent=Os04t0513400-01
Chr04	irgsp1_rep	CDS	25664525	25664758	.	+	1	Parent=Os04t0513400-01
Chr04	irgsp1_rep	CDS	25665028	25665047	.	+	1	Parent=Os04t0513400-01
Chr04	irgsp1_rep	CDS	25665729	25665772	.	+	2	Parent=Os04t0513400-01
Chr04	irgsp1_rep	three_prime_UTR	25665773	25665981	.	+	.	Parent=Os04t0513400-01
Chr04	irgsp1_rep	three_prime_UTR	25666073	25666175	.	+	.	Parent=Os04t0513400-01
Chr04	irgsp1_rep	three_prime_UTR	25666320	25666422	.	+	.	Parent=Os04t0513400-01
Chr04	irgsp1_rep	three_prime_UTR	25666517	25667057	.	+	.	Parent=Os04t0513400-01
Chr04	irgsp1_rep	mRNA	25658339	25666661	.	+	.	ID=Os04t0513400-02;Name=Os04t0513400-02;Locus_id=Os04g0513400;CGSNL Gene Symbol=BGLU16;CGSNL Gene Name=BETA-GLUCOSIDASE 16;Oryzabase Gene Symbol Synonym(s)=Os4bglu16%2C Os4Bglu16%2C Os4BGlu16;Oryzabase Gene Name Synonym(s)=beta-glucosidase 16;Note=Similar to Beta-glucosidase.;Transcript_evidence=AK066850 (DDBJ%2C Best hit);ORF_evidence=Q7XSK2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 1%2C active site (IPR018120);NIAS_FLcDNA=J013081O13;Oryzabase=12089;Expression=AK066850;TENOR=Os04t0513400-02;KEGG=Os04t0513400-02 (EC:3.2.1.108%2C EC:3.2.1.62)
Chr04	irgsp1_rep	five_prime_UTR	25658339	25658401	.	+	.	Parent=Os04t0513400-02
Chr04	irgsp1_rep	CDS	25658402	25658542	.	+	0	Parent=Os04t0513400-02
Chr04	irgsp1_rep	CDS	25658664	25658730	.	+	0	Parent=Os04t0513400-02
Chr04	irgsp1_rep	CDS	25661563	25661678	.	+	2	Parent=Os04t0513400-02
Chr04	irgsp1_rep	three_prime_UTR	25661679	25662999	.	+	.	Parent=Os04t0513400-02
Chr04	irgsp1_rep	three_prime_UTR	25664338	25664425	.	+	.	Parent=Os04t0513400-02
Chr04	irgsp1_rep	three_prime_UTR	25664525	25664777	.	+	.	Parent=Os04t0513400-02
Chr04	irgsp1_rep	three_prime_UTR	25664932	25665047	.	+	.	Parent=Os04t0513400-02
Chr04	irgsp1_rep	three_prime_UTR	25665729	25665981	.	+	.	Parent=Os04t0513400-02
Chr04	irgsp1_rep	three_prime_UTR	25666073	25666175	.	+	.	Parent=Os04t0513400-02
Chr04	irgsp1_rep	three_prime_UTR	25666320	25666422	.	+	.	Parent=Os04t0513400-02
Chr04	irgsp1_rep	three_prime_UTR	25666517	25666661	.	+	.	Parent=Os04t0513400-02
Chr04	irgsp1_rep	mRNA	25664335	25666680	.	-	.	ID=Os04t0513550-00;Name=Os04t0513550-00;Locus_id=Os04g0513550;Note=Hypothetical protein.;Transcript_evidence=EU943172 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0513550-00
Chr04	irgsp1_rep	five_prime_UTR	25666045	25666680	.	-	.	Parent=Os04t0513550-00
Chr04	irgsp1_rep	CDS	25665823	25666044	.	-	0	Parent=Os04t0513550-00
Chr04	irgsp1_rep	three_prime_UTR	25665656	25665822	.	-	.	Parent=Os04t0513550-00
Chr04	irgsp1_rep	three_prime_UTR	25664797	25665075	.	-	.	Parent=Os04t0513550-00
Chr04	irgsp1_rep	three_prime_UTR	25664335	25664646	.	-	.	Parent=Os04t0513550-00
Chr04	irgsp1_rep	mRNA	25672306	25674971	.	+	.	ID=Os04t0513700-00;Name=Os04t0513700-00;Locus_id=Os04g0513700;CGSNL Gene Symbol=BGLU17;CGSNL Gene Name=BETA-GLUCOSIDASE 17;Oryzabase Gene Symbol Synonym(s)=Os4bglu17%2C Os4Bglu17;Oryzabase Gene Name Synonym(s)=beta-glucosidase 17;Note=Similar to Beta-glucosidase 16.;Transcript_evidence=BT039444 (DDBJ);ORF_evidence=Q7XSK2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);Oryzabase=12090;TENOR=Os04t0513700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	25672306	25672752	.	+	0	Parent=Os04t0513700-00
Chr04	irgsp1_rep	CDS	25673714	25673794	.	+	0	Parent=Os04t0513700-00
Chr04	irgsp1_rep	CDS	25673889	25673964	.	+	0	Parent=Os04t0513700-00
Chr04	irgsp1_rep	CDS	25674075	25674149	.	+	2	Parent=Os04t0513700-00
Chr04	irgsp1_rep	CDS	25674286	25674373	.	+	2	Parent=Os04t0513700-00
Chr04	irgsp1_rep	CDS	25674470	25674722	.	+	1	Parent=Os04t0513700-00
Chr04	irgsp1_rep	CDS	25674822	25674971	.	+	0	Parent=Os04t0513700-00
Chr04	irgsp1_rep	mRNA	25672605	25674939	.	-	.	ID=Os04t0513800-00;Name=Os04t0513800-00;Locus_id=Os04g0513800;Note=Hypothetical protein.;Transcript_evidence=tplb0059k05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0513800-00
Chr04	irgsp1_rep	CDS	25674820	25674939	.	-	0	Parent=Os04t0513800-00
Chr04	irgsp1_rep	CDS	25674574	25674720	.	-	0	Parent=Os04t0513800-00
Chr04	irgsp1_rep	three_prime_UTR	25674466	25674573	.	-	.	Parent=Os04t0513800-00
Chr04	irgsp1_rep	three_prime_UTR	25674295	25674369	.	-	.	Parent=Os04t0513800-00
Chr04	irgsp1_rep	three_prime_UTR	25674075	25674155	.	-	.	Parent=Os04t0513800-00
Chr04	irgsp1_rep	three_prime_UTR	25673868	25673964	.	-	.	Parent=Os04t0513800-00
Chr04	irgsp1_rep	three_prime_UTR	25673694	25673778	.	-	.	Parent=Os04t0513800-00
Chr04	irgsp1_rep	three_prime_UTR	25672605	25672734	.	-	.	Parent=Os04t0513800-00
Chr04	irgsp1_rep	mRNA	25681399	25685698	.	-	.	ID=Os04t0513900-01;Name=Os04t0513900-01;Locus_id=Os04g0513900;CGSNL Gene Symbol=BGLU18;CGSNL Gene Name=BETA-GLUCOSIDASE 18;Oryzabase Gene Symbol Synonym(s)=Os4bglu18%2C Os4Bglu18%2C Os4BGlu18;Oryzabase Gene Name Synonym(s)=beta-glucosidase 18;Note=Glycoside hydrolase%2C family 1 protein.;Transcript_evidence=AK058333 (DDBJ%2C Best hit);ORF_evidence=Q01I20 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-014-C11;Oryzabase=12091;Expression=AK058333;TENOR=Os04t0513900-01;KEGG=Os04t0513900-01
Chr04	irgsp1_rep	CDS	25685580	25685698	.	-	0	Parent=Os04t0513900-01
Chr04	irgsp1_rep	CDS	25685203	25685452	.	-	1	Parent=Os04t0513900-01
Chr04	irgsp1_rep	CDS	25684945	25685047	.	-	0	Parent=Os04t0513900-01
Chr04	irgsp1_rep	CDS	25684718	25684826	.	-	2	Parent=Os04t0513900-01
Chr04	irgsp1_rep	CDS	25681557	25681737	.	-	1	Parent=Os04t0513900-01
Chr04	irgsp1_rep	three_prime_UTR	25681399	25681556	.	-	.	Parent=Os04t0513900-01
Chr04	irgsp1_rep	mRNA	25681530	25687116	.	+	.	ID=Os04t0514150-01;Name=Os04t0514150-01;Locus_id=Os04g0514150;Note=Hypothetical gene.;Transcript_evidence=AK288552 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090046N08;TENOR=Os04t0514150-01;KEGG=Os04t0514150-01
Chr04	irgsp1_rep	five_prime_UTR	25681530	25683308	.	+	.	Parent=Os04t0514150-01
Chr04	irgsp1_rep	CDS	25683309	25683728	.	+	0	Parent=Os04t0514150-01
Chr04	irgsp1_rep	three_prime_UTR	25683729	25687116	.	+	.	Parent=Os04t0514150-01
Chr04	irgsp1_rep	mRNA	25700854	25701694	.	-	.	ID=Os04t0514301-01;Name=Os04t0514301-01;Locus_id=Os04g0514301;Note=Non-protein coding transcript.;Transcript_evidence=AK108112 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-139-C01;TENOR=Os04t0514301-01
Chr04	irgsp1_rep	exon	25700854	25701694	.	-	.	Parent=Os04t0514301-01
Chr04	irgsp1_rep	mRNA	25701024	25703247	.	+	.	ID=Os04t0514400-01;Name=Os04t0514400-01;Locus_id=Os04g0514400;Note=Peptidoglycan binding-like domain containing protein.;Transcript_evidence=AK069628 (DDBJ%2C Best hit);ORF_evidence=Q01I19 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C cysteine-rich domain (IPR001305),Peptidoglycan binding-like (IPR002477);NIAS_FLcDNA=J023025J11;Expression=AK069628;TENOR=Os04t0514400-01;KEGG=Os04t0514400-01
Chr04	irgsp1_rep	five_prime_UTR	25701024	25701110	.	+	.	Parent=Os04t0514400-01
Chr04	irgsp1_rep	CDS	25701111	25701641	.	+	0	Parent=Os04t0514400-01
Chr04	irgsp1_rep	CDS	25701889	25701984	.	+	0	Parent=Os04t0514400-01
Chr04	irgsp1_rep	CDS	25702078	25702170	.	+	0	Parent=Os04t0514400-01
Chr04	irgsp1_rep	CDS	25702451	25702694	.	+	0	Parent=Os04t0514400-01
Chr04	irgsp1_rep	CDS	25702808	25702845	.	+	2	Parent=Os04t0514400-01
Chr04	irgsp1_rep	CDS	25702946	25703047	.	+	0	Parent=Os04t0514400-01
Chr04	irgsp1_rep	three_prime_UTR	25703048	25703247	.	+	.	Parent=Os04t0514400-01
Chr04	irgsp1_rep	mRNA	25702414	25707446	.	-	.	ID=Os04t0514500-01;Name=Os04t0514500-01;Locus_id=Os04g0514500;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK121876 (DDBJ%2C Best hit);ORF_evidence=Q01I18 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033104I01;Expression=AK121876;TENOR=Os04t0514500-01;KEGG=Os04t0514500-01
Chr04	irgsp1_rep	five_prime_UTR	25707420	25707446	.	-	.	Parent=Os04t0514500-01
Chr04	irgsp1_rep	CDS	25704336	25707419	.	-	0	Parent=Os04t0514500-01
Chr04	irgsp1_rep	three_prime_UTR	25704077	25704335	.	-	.	Parent=Os04t0514500-01
Chr04	irgsp1_rep	three_prime_UTR	25703845	25703946	.	-	.	Parent=Os04t0514500-01
Chr04	irgsp1_rep	three_prime_UTR	25702920	25703181	.	-	.	Parent=Os04t0514500-01
Chr04	irgsp1_rep	three_prime_UTR	25702414	25702801	.	-	.	Parent=Os04t0514500-01
Chr04	irgsp1_rep	mRNA	25705561	25706499	.	-	.	ID=Os04t0514500-02;Name=Os04t0514500-02;Locus_id=Os04g0514500;Note=Similar to OSIGBa0140J09.3 protein.;Transcript_evidence=AK073502 (DDBJ%2C Best hit);ORF_evidence=Q01I18 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J033046F18;TENOR=Os04t0514500-02
Chr04	irgsp1_rep	five_prime_UTR	25706499	25706499	.	-	.	Parent=Os04t0514500-02
Chr04	irgsp1_rep	CDS	25705561	25706498	.	-	0	Parent=Os04t0514500-02
Chr04	irgsp1_rep	mRNA	25708429	25712602	.	-	.	ID=Os04t0514600-00;Name=Os04t0514600-00;Locus_id=Os04g0514600;Note=Similar to NBS-LRR type disease resistance protein O2 (Fragment).;Transcript_evidence=AK365389 (DDBJ);ORF_evidence=O81527 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os04t0514600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	25711916	25712602	.	-	0	Parent=Os04t0514600-00
Chr04	irgsp1_rep	CDS	25710354	25710644	.	-	0	Parent=Os04t0514600-00
Chr04	irgsp1_rep	three_prime_UTR	25708429	25710353	.	-	.	Parent=Os04t0514600-00
Chr04	irgsp1_rep	mRNA	25727506	25731629	.	-	.	ID=Os04t0514800-01;Name=Os04t0514800-01;Locus_id=Os04g0514800;Note=Similar to Dual specificity kinase 1.;Transcript_evidence=AK111987 (DDBJ%2C Best hit);ORF_evidence=Q01I14 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-026-B12;Expression=AK111987;TENOR=Os04t0514800-01;KEGG=Os04t0514800-01 (EC:2.7.11.1)
Chr04	irgsp1_rep	five_prime_UTR	25731313	25731629	.	-	.	Parent=Os04t0514800-01
Chr04	irgsp1_rep	CDS	25731237	25731312	.	-	0	Parent=Os04t0514800-01
Chr04	irgsp1_rep	CDS	25731052	25731092	.	-	2	Parent=Os04t0514800-01
Chr04	irgsp1_rep	CDS	25730765	25730834	.	-	0	Parent=Os04t0514800-01
Chr04	irgsp1_rep	CDS	25730529	25730677	.	-	2	Parent=Os04t0514800-01
Chr04	irgsp1_rep	CDS	25730269	25730364	.	-	0	Parent=Os04t0514800-01
Chr04	irgsp1_rep	CDS	25729783	25729853	.	-	0	Parent=Os04t0514800-01
Chr04	irgsp1_rep	CDS	25729301	25729362	.	-	1	Parent=Os04t0514800-01
Chr04	irgsp1_rep	CDS	25728915	25728978	.	-	2	Parent=Os04t0514800-01
Chr04	irgsp1_rep	CDS	25728729	25728813	.	-	1	Parent=Os04t0514800-01
Chr04	irgsp1_rep	CDS	25728491	25728617	.	-	0	Parent=Os04t0514800-01
Chr04	irgsp1_rep	CDS	25728341	25728411	.	-	2	Parent=Os04t0514800-01
Chr04	irgsp1_rep	CDS	25728198	25728258	.	-	0	Parent=Os04t0514800-01
Chr04	irgsp1_rep	CDS	25728000	25728097	.	-	2	Parent=Os04t0514800-01
Chr04	irgsp1_rep	CDS	25727619	25727912	.	-	0	Parent=Os04t0514800-01
Chr04	irgsp1_rep	three_prime_UTR	25727506	25727618	.	-	.	Parent=Os04t0514800-01
Chr04	irgsp1_rep	mRNA	25728360	25731316	.	+	.	ID=Os04t0514900-00;Name=Os04t0514900-00;Locus_id=Os04g0514900;Note=Hypothetical protein.;Transcript_evidence=tplb0035e01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0514900-00
Chr04	irgsp1_rep	five_prime_UTR	25728360	25728419	.	+	.	Parent=Os04t0514900-00
Chr04	irgsp1_rep	CDS	25728420	25728427	.	+	0	Parent=Os04t0514900-00
Chr04	irgsp1_rep	CDS	25728508	25728619	.	+	1	Parent=Os04t0514900-00
Chr04	irgsp1_rep	CDS	25728726	25728830	.	+	0	Parent=Os04t0514900-00
Chr04	irgsp1_rep	CDS	25728930	25728944	.	+	0	Parent=Os04t0514900-00
Chr04	irgsp1_rep	three_prime_UTR	25728945	25728975	.	+	.	Parent=Os04t0514900-00
Chr04	irgsp1_rep	three_prime_UTR	25729288	25729370	.	+	.	Parent=Os04t0514900-00
Chr04	irgsp1_rep	three_prime_UTR	25729702	25730346	.	+	.	Parent=Os04t0514900-00
Chr04	irgsp1_rep	three_prime_UTR	25730510	25730788	.	+	.	Parent=Os04t0514900-00
Chr04	irgsp1_rep	three_prime_UTR	25731241	25731316	.	+	.	Parent=Os04t0514900-00
Chr04	irgsp1_rep	mRNA	25751369	25753329	.	-	.	ID=Os04t0515300-02;Name=Os04t0515300-02;Locus_id=Os04g0515300;Note=Ribosomal protein L14 domain containing protein.;Transcript_evidence=AK121631 (DDBJ%2C Best hit),AK062092 (DDBJ%2C Best hit),AK119791 (DDBJ%2C Best hit);ORF_evidence=Q01I11 (UniProt);NIAS_FLcDNA=J033050G01,001-044-H03,002-175-A03;TENOR=Os04t0515300-02
Chr04	irgsp1_rep	five_prime_UTR	25753241	25753329	.	-	.	Parent=Os04t0515300-02
Chr04	irgsp1_rep	CDS	25753238	25753240	.	-	0	Parent=Os04t0515300-02
Chr04	irgsp1_rep	CDS	25753053	25753154	.	-	0	Parent=Os04t0515300-02
Chr04	irgsp1_rep	CDS	25751885	25752014	.	-	0	Parent=Os04t0515300-02
Chr04	irgsp1_rep	CDS	25751694	25751806	.	-	2	Parent=Os04t0515300-02
Chr04	irgsp1_rep	CDS	25751549	25751605	.	-	0	Parent=Os04t0515300-02
Chr04	irgsp1_rep	three_prime_UTR	25751369	25751548	.	-	.	Parent=Os04t0515300-02
Chr04	irgsp1_rep	mRNA	25751498	25753118	.	+	.	ID=Os04t0515350-00;Name=Os04t0515350-00;Locus_id=Os04g0515350;Note=Similar to Root abundant protein.;Transcript_evidence=U91834 (DDBJ);ORF_evidence=O04075 (UniProt);TENOR=Os04t0515350-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	25751498	25751607	.	+	0	Parent=Os04t0515350-00
Chr04	irgsp1_rep	CDS	25751688	25751808	.	+	1	Parent=Os04t0515350-00
Chr04	irgsp1_rep	CDS	25751888	25751905	.	+	0	Parent=Os04t0515350-00
Chr04	irgsp1_rep	three_prime_UTR	25751906	25752010	.	+	.	Parent=Os04t0515350-00
Chr04	irgsp1_rep	three_prime_UTR	25753042	25753118	.	+	.	Parent=Os04t0515350-00
Chr04	irgsp1_rep	mRNA	25754162	25756273	.	+	.	ID=Os04t0515400-00;Name=Os04t0515400-00;Locus_id=Os04g0515400;Note=NTP pyrophosphohydrolase MazG%2C putative catalytic core domain containing protein.;Transcript_evidence=AK336096 (DDBJ);ORF_evidence=Q01I10 (UniProt);InterPro=NTP pyrophosphohydrolase MazG%2C putative catalytic core (IPR004518);TENOR=Os04t0515400-00;KEGG=Os04t0515400-00
Chr04	irgsp1_rep	five_prime_UTR	25754162	25754162	.	+	.	Parent=Os04t0515400-00
Chr04	irgsp1_rep	CDS	25754163	25754345	.	+	0	Parent=Os04t0515400-00
Chr04	irgsp1_rep	CDS	25756039	25756269	.	+	0	Parent=Os04t0515400-00
Chr04	irgsp1_rep	three_prime_UTR	25756270	25756273	.	+	.	Parent=Os04t0515400-00
Chr04	irgsp1_rep	mRNA	25773347	25776183	.	+	.	ID=Os04t0515900-01;Name=Os04t0515900-01;Locus_id=Os04g0515900;Oryzabase Gene Symbol Synonym(s)=ONAC008%2C ONAC8;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 008%2C NAC domain-containing protein 8;Note=Similar to NAM / CUC2-like protein.;Transcript_evidence=AK062955 (DDBJ%2C Best hit);ORF_evidence=NP_001150296.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=001-109-C12;Oryzabase=11460;Expression=AK062955;TENOR=Os04t0515900-01;KEGG=Os04t0515900-01
Chr04	irgsp1_rep	five_prime_UTR	25773347	25773516	.	+	.	Parent=Os04t0515900-01
Chr04	irgsp1_rep	CDS	25773517	25773685	.	+	0	Parent=Os04t0515900-01
Chr04	irgsp1_rep	CDS	25775129	25775394	.	+	2	Parent=Os04t0515900-01
Chr04	irgsp1_rep	CDS	25775502	25775903	.	+	0	Parent=Os04t0515900-01
Chr04	irgsp1_rep	three_prime_UTR	25775904	25776183	.	+	.	Parent=Os04t0515900-01
Chr04	irgsp1_rep	mRNA	25790019	25791505	.	-	.	ID=Os04t0516200-01;Name=Os04t0516200-01;Locus_id=Os04g0516200;CGSNL Gene Symbol=G1L4;CGSNL Gene Name=G1 LIKE PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OsG1L4;Note=Protein of unknown function DUF640 domain containing protein.;Transcript_evidence=AK243311 (DDBJ%2C Best hit);ORF_evidence=D1MYE3 (UniProt);InterPro=Domain of unknown function DUF640 (IPR006936);NIAS_FLcDNA=J100055K05;Oryzabase=8885;TENOR=Os04t0516200-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	25791459	25791505	.	-	.	Parent=Os04t0516200-01
Chr04	irgsp1_rep	five_prime_UTR	25791238	25791313	.	-	.	Parent=Os04t0516200-01
Chr04	irgsp1_rep	five_prime_UTR	25790861	25790881	.	-	.	Parent=Os04t0516200-01
Chr04	irgsp1_rep	CDS	25790252	25790860	.	-	0	Parent=Os04t0516200-01
Chr04	irgsp1_rep	three_prime_UTR	25790019	25790251	.	-	.	Parent=Os04t0516200-01
Chr04	irgsp1_rep	mRNA	25806660	25807266	.	-	.	ID=Os04t0516300-00;Name=Os04t0516300-00;Locus_id=Os04g0516300;Note=Similar to OSIGBa0115M15.10 protein.;Transcript_evidence=EU953595 (DDBJ);ORF_evidence=Q01IS3 (UniProt);TENOR=Os04t0516300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	25806853	25807266	.	-	0	Parent=Os04t0516300-00
Chr04	irgsp1_rep	three_prime_UTR	25806660	25806852	.	-	.	Parent=Os04t0516300-00
Chr04	irgsp1_rep	mRNA	25825339	25825664	.	-	.	ID=Os04t0516550-00;Name=Os04t0516550-00;Locus_id=Os04g0516550;Note=Conserved hypothetical protein.;Transcript_evidence=AK333114 (DDBJ);ORF_evidence=NP_001047774.1 (RefSeq);TENOR=Os04t0516550-00
Chr04	irgsp1_rep	CDS	25825353	25825664	.	-	0	Parent=Os04t0516550-00
Chr04	irgsp1_rep	three_prime_UTR	25825339	25825352	.	-	.	Parent=Os04t0516550-00
Chr04	irgsp1_rep	mRNA	25826802	25830703	.	-	.	ID=Os04t0516600-01;Name=Os04t0516600-01;Locus_id=Os04g0516600;Note=Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 domain containing protein.;Transcript_evidence=AK059652 (DDBJ%2C Best hit),AK099280 (DDBJ%2C Best hit);ORF_evidence=Q01J56 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Molecular Function: catalytic activity (GO:0003824),Molecular Function: lyase activity (GO:0016829),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aromatic amino acid beta-eliminating lyase/threonine aldolase (IPR001597),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=001-031-C08,J023133K04;TENOR=Os04t0516600-01
Chr04	irgsp1_rep	five_prime_UTR	25830600	25830703	.	-	.	Parent=Os04t0516600-01
Chr04	irgsp1_rep	five_prime_UTR	25829240	25829270	.	-	.	Parent=Os04t0516600-01
Chr04	irgsp1_rep	CDS	25828797	25829239	.	-	0	Parent=Os04t0516600-01
Chr04	irgsp1_rep	CDS	25828566	25828677	.	-	1	Parent=Os04t0516600-01
Chr04	irgsp1_rep	CDS	25828194	25828244	.	-	0	Parent=Os04t0516600-01
Chr04	irgsp1_rep	CDS	25828027	25828098	.	-	0	Parent=Os04t0516600-01
Chr04	irgsp1_rep	CDS	25827813	25827945	.	-	0	Parent=Os04t0516600-01
Chr04	irgsp1_rep	CDS	25827660	25827718	.	-	2	Parent=Os04t0516600-01
Chr04	irgsp1_rep	CDS	25827469	25827566	.	-	0	Parent=Os04t0516600-01
Chr04	irgsp1_rep	CDS	25827129	25827195	.	-	1	Parent=Os04t0516600-01
Chr04	irgsp1_rep	CDS	25826937	25827020	.	-	0	Parent=Os04t0516600-01
Chr04	irgsp1_rep	three_prime_UTR	25826802	25826936	.	-	.	Parent=Os04t0516600-01
Chr04	irgsp1_rep	mRNA	25826937	25829274	.	+	.	ID=Os04t0516701-00;Name=Os04t0516701-00;Locus_id=Os04g0516701;Note=Hypothetical gene.;Transcript_evidence=BT017119 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0516701-00;KEGG=Os04t0516701-00
Chr04	irgsp1_rep	five_prime_UTR	25826937	25827042	.	+	.	Parent=Os04t0516701-00
Chr04	irgsp1_rep	five_prime_UTR	25827414	25827609	.	+	.	Parent=Os04t0516701-00
Chr04	irgsp1_rep	five_prime_UTR	25827798	25827956	.	+	.	Parent=Os04t0516701-00
Chr04	irgsp1_rep	five_prime_UTR	25828040	25828103	.	+	.	Parent=Os04t0516701-00
Chr04	irgsp1_rep	five_prime_UTR	25828198	25828223	.	+	.	Parent=Os04t0516701-00
Chr04	irgsp1_rep	CDS	25828224	25828241	.	+	0	Parent=Os04t0516701-00
Chr04	irgsp1_rep	CDS	25828563	25828672	.	+	0	Parent=Os04t0516701-00
Chr04	irgsp1_rep	CDS	25828792	25829218	.	+	1	Parent=Os04t0516701-00
Chr04	irgsp1_rep	three_prime_UTR	25829219	25829274	.	+	.	Parent=Os04t0516701-00
Chr04	irgsp1_rep	mRNA	25832896	25834622	.	-	.	ID=Os04t0516800-01;Name=Os04t0516800-01;Locus_id=Os04g0516800;Note=Hypothetical protein.;Transcript_evidence=AK105554 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-128-B02;Expression=AK105554;TENOR=Os04t0516800-01;KEGG=Os04t0516800-01
Chr04	irgsp1_rep	five_prime_UTR	25834449	25834622	.	-	.	Parent=Os04t0516800-01
Chr04	irgsp1_rep	CDS	25833945	25834448	.	-	0	Parent=Os04t0516800-01
Chr04	irgsp1_rep	three_prime_UTR	25832896	25833944	.	-	.	Parent=Os04t0516800-01
Chr04	irgsp1_rep	mRNA	25833124	25835026	.	+	.	ID=Os04t0516900-01;Name=Os04t0516900-01;Locus_id=Os04g0516900;Note=Conserved hypothetical protein.;Transcript_evidence=AK108714 (DDBJ%2C Best hit);ORF_evidence=Q7XKW4 (UniProt);NIAS_FLcDNA=002-150-B06;Expression=AK108714;TENOR=Os04t0516900-01;KEGG=Os04t0516900-01
Chr04	irgsp1_rep	five_prime_UTR	25833124	25833164	.	+	.	Parent=Os04t0516900-01
Chr04	irgsp1_rep	CDS	25833165	25834646	.	+	0	Parent=Os04t0516900-01
Chr04	irgsp1_rep	three_prime_UTR	25834647	25835026	.	+	.	Parent=Os04t0516900-01
Chr04	irgsp1_rep	mRNA	25835663	25837775	.	+	.	ID=Os04t0517000-01;Name=Os04t0517000-01;Locus_id=Os04g0517000;Note=Similar to OSIGBa0145M07.3 protein.;Transcript_evidence=AK101663 (DDBJ%2C Best hit);ORF_evidence=Q01J54 (UniProt);NIAS_FLcDNA=J033057M02;TENOR=Os04t0517000-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	25835663	25835723	.	+	.	Parent=Os04t0517000-01
Chr04	irgsp1_rep	CDS	25835724	25835932	.	+	0	Parent=Os04t0517000-01
Chr04	irgsp1_rep	CDS	25837123	25837453	.	+	1	Parent=Os04t0517000-01
Chr04	irgsp1_rep	three_prime_UTR	25837454	25837775	.	+	.	Parent=Os04t0517000-01
Chr04	irgsp1_rep	mRNA	25843041	25844875	.	-	.	ID=Os04t0517100-01;Name=Os04t0517100-01;Locus_id=Os04g0517100;Oryzabase Gene Symbol Synonym(s)=OsMYB4%2C Osmyb4%2C OsMyb4%2C MYB4%2C OsMYB55%2C MYB55%2C OsMyb8%2C MYB8%2C OsMYB13b%2C MYB13b;Oryzabase Gene Name Synonym(s)=Myb transcription factor 4%2C myb transcription factor 8%2C transcription factor MYB8;Note=Similar to OSIGBa0145M07.4 protein.;Transcript_evidence=AK111798 (DDBJ%2C Best hit);ORF_evidence=Q01J53 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J023105H16;Oryzabase=9970;TENOR=Os04t0517100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	25843910	25844875	.	-	.	Parent=Os04t0517100-01
Chr04	irgsp1_rep	CDS	25843373	25843909	.	-	0	Parent=Os04t0517100-01
Chr04	irgsp1_rep	three_prime_UTR	25843041	25843372	.	-	.	Parent=Os04t0517100-01
Chr04	irgsp1_rep	mRNA	25843038	25844912	.	-	.	ID=Os04t0517100-02;Name=Os04t0517100-02;Locus_id=Os04g0517100;RAP-DB Gene Symbol Synonym(s)=OsMyb4%2C MYB55;Oryzabase Gene Symbol Synonym(s)=OsMYB4%2C Osmyb4%2C OsMyb4%2C MYB4%2C OsMYB55%2C MYB55%2C OsMyb8%2C MYB8%2C OsMYB13b%2C MYB13b;Oryzabase Gene Name Synonym(s)=Myb transcription factor 4%2C myb transcription factor 8%2C transcription factor MYB8;Note=SG2-type MYB transcription factor%2C Cold tolerance%2C Resistance to fungal and bacterial pathogens%2C  Panicle development;Transcript_evidence=Y11414 (Arborio),Inferred from literature;ORF_evidence=Q7XBH4;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeobox-like domain superfamily (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930);Manual Curation=May 29%2C 2018;Literature_PMID=29562362,20807373,14675437;Oryzabase=9970
Chr04	irgsp1_rep	five_prime_UTR	25844781	25844912	.	-	.	Parent=Os04t0517100-02
Chr04	irgsp1_rep	CDS	25844648	25844780	.	-	0	Parent=Os04t0517100-02
Chr04	irgsp1_rep	CDS	25844430	25844559	.	-	2	Parent=Os04t0517100-02
Chr04	irgsp1_rep	CDS	25843373	25843883	.	-	1	Parent=Os04t0517100-02
Chr04	irgsp1_rep	three_prime_UTR	25843038	25843372	.	-	.	Parent=Os04t0517100-02
Chr04	irgsp1_rep	mRNA	25855678	25860031	.	-	.	ID=Os04t0517300-01;Name=Os04t0517300-01;Locus_id=Os04g0517300;CGSNL Gene Symbol=RUS2;CGSNL Gene Name=ROOT UV-B SENSITIVE 2;Oryzabase Gene Symbol Synonym(s)=OsRUS2%2C OsRUS2.1%2C OsRUS2.2;Note=Protein of unknown function DUF647 family protein.;Transcript_evidence=AK069879 (DDBJ%2C Best hit);ORF_evidence=Q01J52 (UniProt);InterPro=Protein of unknown function DUF647 (IPR006968);NIAS_FLcDNA=J023036K12;Oryzabase=21448;Expression=AK069879;TENOR=Os04t0517300-01;KEGG=Os04t0517300-01
Chr04	irgsp1_rep	five_prime_UTR	25859870	25860031	.	-	.	Parent=Os04t0517300-01
Chr04	irgsp1_rep	CDS	25859858	25859869	.	-	0	Parent=Os04t0517300-01
Chr04	irgsp1_rep	CDS	25859662	25859784	.	-	0	Parent=Os04t0517300-01
Chr04	irgsp1_rep	CDS	25859076	25859164	.	-	0	Parent=Os04t0517300-01
Chr04	irgsp1_rep	CDS	25858913	25858997	.	-	1	Parent=Os04t0517300-01
Chr04	irgsp1_rep	CDS	25858653	25858712	.	-	0	Parent=Os04t0517300-01
Chr04	irgsp1_rep	CDS	25858477	25858570	.	-	0	Parent=Os04t0517300-01
Chr04	irgsp1_rep	CDS	25858250	25858347	.	-	2	Parent=Os04t0517300-01
Chr04	irgsp1_rep	CDS	25857857	25858036	.	-	0	Parent=Os04t0517300-01
Chr04	irgsp1_rep	CDS	25856385	25856507	.	-	0	Parent=Os04t0517300-01
Chr04	irgsp1_rep	CDS	25855861	25856313	.	-	0	Parent=Os04t0517300-01
Chr04	irgsp1_rep	three_prime_UTR	25855678	25855860	.	-	.	Parent=Os04t0517300-01
Chr04	irgsp1_rep	mRNA	25860359	25865813	.	-	.	ID=Os04t0517350-00;Name=Os04t0517350-00;Locus_id=Os04g0517350;Note=Hypothetical protein.;Transcript_evidence=tplb0044f05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0517350-00
Chr04	irgsp1_rep	five_prime_UTR	25865101	25865813	.	-	.	Parent=Os04t0517350-00
Chr04	irgsp1_rep	five_prime_UTR	25864762	25865032	.	-	.	Parent=Os04t0517350-00
Chr04	irgsp1_rep	five_prime_UTR	25864202	25864353	.	-	.	Parent=Os04t0517350-00
Chr04	irgsp1_rep	five_prime_UTR	25863945	25864101	.	-	.	Parent=Os04t0517350-00
Chr04	irgsp1_rep	five_prime_UTR	25863639	25863843	.	-	.	Parent=Os04t0517350-00
Chr04	irgsp1_rep	five_prime_UTR	25863301	25863494	.	-	.	Parent=Os04t0517350-00
Chr04	irgsp1_rep	five_prime_UTR	25862771	25863036	.	-	.	Parent=Os04t0517350-00
Chr04	irgsp1_rep	five_prime_UTR	25861198	25861393	.	-	.	Parent=Os04t0517350-00
Chr04	irgsp1_rep	five_prime_UTR	25860999	25861095	.	-	.	Parent=Os04t0517350-00
Chr04	irgsp1_rep	CDS	25860966	25860998	.	-	0	Parent=Os04t0517350-00
Chr04	irgsp1_rep	CDS	25860359	25860600	.	-	0	Parent=Os04t0517350-00
Chr04	irgsp1_rep	mRNA	25863742	25865878	.	+	.	ID=Os04t0517400-01;Name=Os04t0517400-01;Locus_id=Os04g0517400;CGSNL Gene Symbol=PGSIP-B2;CGSNL Gene Name=PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN B2;Oryzabase Gene Symbol Synonym(s)=OsPGSIP-B2;Oryzabase Gene Name Synonym(s)=plant glycogenin-like starch initiation protein B2;Note=Similar to Plant glycogenin-like starch initiation protein (Fragment).;Transcript_evidence=AK059571 (DDBJ%2C Best hit);ORF_evidence=F1DGA9 (UniProt);NIAS_FLcDNA=001-030-A02;Oryzabase=23275;TENOR=Os04t0517400-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	25863742	25863743	.	+	.	Parent=Os04t0517400-01
Chr04	irgsp1_rep	CDS	25863744	25863851	.	+	0	Parent=Os04t0517400-01
Chr04	irgsp1_rep	CDS	25863955	25864092	.	+	0	Parent=Os04t0517400-01
Chr04	irgsp1_rep	CDS	25864196	25864336	.	+	0	Parent=Os04t0517400-01
Chr04	irgsp1_rep	CDS	25864744	25865023	.	+	0	Parent=Os04t0517400-01
Chr04	irgsp1_rep	CDS	25865093	25865216	.	+	2	Parent=Os04t0517400-01
Chr04	irgsp1_rep	CDS	25865636	25865735	.	+	1	Parent=Os04t0517400-01
Chr04	irgsp1_rep	three_prime_UTR	25865736	25865878	.	+	.	Parent=Os04t0517400-01
Chr04	irgsp1_rep	mRNA	25867807	25869187	.	+	.	ID=Os04t0517500-01;Name=Os04t0517500-01;Locus_id=Os04g0517500;Note=Similar to Phosphoenolpyruvate carboxylase kinase.;Transcript_evidence=AK066885 (DDBJ%2C Best hit);ORF_evidence=Q2ABP5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013088G18;TENOR=Os04t0517500-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	25867807	25867851	.	+	.	Parent=Os04t0517500-01
Chr04	irgsp1_rep	CDS	25867852	25868550	.	+	0	Parent=Os04t0517500-01
Chr04	irgsp1_rep	three_prime_UTR	25868551	25868658	.	+	.	Parent=Os04t0517500-01
Chr04	irgsp1_rep	three_prime_UTR	25868815	25869187	.	+	.	Parent=Os04t0517500-01
Chr04	irgsp1_rep	mRNA	25873036	25878716	.	-	.	ID=Os04t0517600-00;Name=Os04t0517600-00;Locus_id=Os04g0517600;Note=Similar to GA 3beta-hydroxylase.;Transcript_evidence=BT055605 (DDBJ);ORF_evidence=Q94IE4 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);TENOR=Os04t0517600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	25878665	25878716	.	-	.	Parent=Os04t0517600-00
Chr04	irgsp1_rep	five_prime_UTR	25873654	25873706	.	-	.	Parent=Os04t0517600-00
Chr04	irgsp1_rep	CDS	25873036	25873653	.	-	0	Parent=Os04t0517600-00
Chr04	irgsp1_rep	mRNA	25884745	25885575	.	-	.	ID=Os04t0517700-01;Name=Os04t0517700-01;Locus_id=Os04g0517700;CGSNL Gene Symbol=WAK51;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 51;Oryzabase Gene Symbol Synonym(s)=OsWAK51;Note=Similar to OSIGBa0145M07.8 protein.;Transcript_evidence=AK241186 (DDBJ%2C Best hit);ORF_evidence=Q01J49 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J065120G10;Oryzabase=6946;TENOR=Os04t0517700-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	25885575	25885575	.	-	.	Parent=Os04t0517700-01
Chr04	irgsp1_rep	CDS	25884894	25885574	.	-	0	Parent=Os04t0517700-01
Chr04	irgsp1_rep	three_prime_UTR	25884745	25884893	.	-	.	Parent=Os04t0517700-01
Chr04	irgsp1_rep	mRNA	25896740	25897489	.	+	.	ID=Os04t0517900-01;Name=Os04t0517900-01;Locus_id=Os04g0517900;CGSNL Gene Symbol=SAUR18;CGSNL Gene Name=SMALL AUXIN-UP RNA 18;Oryzabase Gene Symbol Synonym(s)=OsSAUR18;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 18;Note=Auxin responsive SAUR protein family protein.;Transcript_evidence=AK241307 (DDBJ%2C Best hit);ORF_evidence=B5RHT9 (UniProt);InterPro=Auxin responsive SAUR protein (IPR003676);NIAS_FLcDNA=J065141A04;Oryzabase=9143;TENOR=Os04t0517900-01;KEGG=Os04t0517900-01
Chr04	irgsp1_rep	five_prime_UTR	25896740	25896779	.	+	.	Parent=Os04t0517900-01
Chr04	irgsp1_rep	CDS	25896780	25897169	.	+	0	Parent=Os04t0517900-01
Chr04	irgsp1_rep	three_prime_UTR	25897170	25897489	.	+	.	Parent=Os04t0517900-01
Chr04	irgsp1_rep	mRNA	25898230	25902357	.	-	.	ID=Os04t0518000-01;Name=Os04t0518000-01;Locus_id=Os04g0518000;Note=Similar to Adenosine kinase (Fragment).;Transcript_evidence=AK101926 (DDBJ%2C Best hit);ORF_evidence=Q01J47 (UniProt);GO=Biological Process: purine ribonucleoside salvage (GO:0006166),Molecular Function: adenosine kinase activity (GO:0004001),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Adenosine kinase (IPR001805),Carbohydrate/puine kinase%2C PfkB%2C conserved site (IPR002173),Carbohydrate/purine kinase (IPR011611);NIAS_FLcDNA=J033071P11;Expression=AK101926;TENOR=Os04t0518000-01;KEGG=Os04t0518000-01 (EC:2.7.1.20)
Chr04	irgsp1_rep	five_prime_UTR	25902255	25902357	.	-	.	Parent=Os04t0518000-01
Chr04	irgsp1_rep	CDS	25902163	25902254	.	-	0	Parent=Os04t0518000-01
Chr04	irgsp1_rep	CDS	25901571	25901624	.	-	1	Parent=Os04t0518000-01
Chr04	irgsp1_rep	CDS	25901394	25901440	.	-	1	Parent=Os04t0518000-01
Chr04	irgsp1_rep	CDS	25901259	25901290	.	-	2	Parent=Os04t0518000-01
Chr04	irgsp1_rep	CDS	25901051	25901154	.	-	0	Parent=Os04t0518000-01
Chr04	irgsp1_rep	CDS	25900879	25900944	.	-	1	Parent=Os04t0518000-01
Chr04	irgsp1_rep	CDS	25900638	25900714	.	-	1	Parent=Os04t0518000-01
Chr04	irgsp1_rep	CDS	25900409	25900506	.	-	2	Parent=Os04t0518000-01
Chr04	irgsp1_rep	CDS	25900266	25900336	.	-	0	Parent=Os04t0518000-01
Chr04	irgsp1_rep	CDS	25900021	25900087	.	-	1	Parent=Os04t0518000-01
Chr04	irgsp1_rep	CDS	25899823	25899945	.	-	0	Parent=Os04t0518000-01
Chr04	irgsp1_rep	CDS	25898790	25898850	.	-	0	Parent=Os04t0518000-01
Chr04	irgsp1_rep	CDS	25898488	25898630	.	-	2	Parent=Os04t0518000-01
Chr04	irgsp1_rep	three_prime_UTR	25898230	25898487	.	-	.	Parent=Os04t0518000-01
Chr04	irgsp1_rep	mRNA	25906878	25910059	.	-	.	ID=Os04t0518100-01;Name=Os04t0518100-01;Locus_id=Os04g0518100;Oryzabase Gene Symbol Synonym(s)=OsPAL02%2C PAL02%2C OsPAL5%2C PAL5%2C OsPAL2. PAL2;Oryzabase Gene Name Synonym(s)=Phenylalanine ammonia-lyase 02;Note=Phenylalanine ammonia-lyase.;Transcript_evidence=AK100346 (DDBJ%2C Best hit);ORF_evidence=A2XVK1 (UniProt);GO=Biological Process: L-phenylalanine catabolic process (GO:0006559),Biological Process: biosynthetic process (GO:0009058),Cellular Component: cytoplasm (GO:0005737),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ammonia-lyase activity (GO:0016841);InterPro=Phenylalanine/histidine ammonia-lyase (IPR001106),Phenylalanine ammonia-lyase (IPR005922),L-Aspartase-like (IPR008948),Phenylalanine/histidine ammonia-lyases%2C active site (IPR022313),Phenylalanine ammonia-lyase%2C shielding domain (IPR023144),L-Aspartase-like%2C N-terminal (IPR024083);NIAS_FLcDNA=J023082J11;Oryzabase=15678;TENOR=Os04t0518100-01;KEGG=Os04t0518100-01 (EC:4.3.1.24)
Chr04	irgsp1_rep	five_prime_UTR	25909969	25910059	.	-	.	Parent=Os04t0518100-01
Chr04	irgsp1_rep	CDS	25909592	25909968	.	-	0	Parent=Os04t0518100-01
Chr04	irgsp1_rep	CDS	25907172	25908918	.	-	1	Parent=Os04t0518100-01
Chr04	irgsp1_rep	three_prime_UTR	25906878	25907171	.	-	.	Parent=Os04t0518100-01
Chr04	irgsp1_rep	mRNA	25911126	25915264	.	-	.	ID=Os04t0518200-01;Name=Os04t0518200-01;Locus_id=Os04g0518200;Note=Conserved hypothetical protein.;Transcript_evidence=AK072373 (DDBJ%2C Best hit);ORF_evidence=Q7X7P6 (UniProt);NIAS_FLcDNA=J023065D01;Expression=AK072373;TENOR=Os04t0518200-01;KEGG=Os04t0518200-01
Chr04	irgsp1_rep	five_prime_UTR	25914972	25915264	.	-	.	Parent=Os04t0518200-01
Chr04	irgsp1_rep	five_prime_UTR	25914664	25914836	.	-	.	Parent=Os04t0518200-01
Chr04	irgsp1_rep	CDS	25914452	25914663	.	-	0	Parent=Os04t0518200-01
Chr04	irgsp1_rep	CDS	25914117	25914354	.	-	1	Parent=Os04t0518200-01
Chr04	irgsp1_rep	three_prime_UTR	25914030	25914116	.	-	.	Parent=Os04t0518200-01
Chr04	irgsp1_rep	three_prime_UTR	25912196	25913708	.	-	.	Parent=Os04t0518200-01
Chr04	irgsp1_rep	three_prime_UTR	25911126	25911718	.	-	.	Parent=Os04t0518200-01
Chr04	irgsp1_rep	mRNA	25911583	25915262	.	-	.	ID=Os04t0518200-02;Name=Os04t0518200-02;Locus_id=Os04g0518200;Note=Conserved hypothetical protein.;Transcript_evidence=AK072585 (DDBJ%2C Best hit);ORF_evidence=Q7X7P6 (UniProt);NIAS_FLcDNA=J023133I16;Expression=AK072585;TENOR=Os04t0518200-02;KEGG=Os04t0518200-02
Chr04	irgsp1_rep	five_prime_UTR	25914972	25915262	.	-	.	Parent=Os04t0518200-02
Chr04	irgsp1_rep	five_prime_UTR	25914664	25914836	.	-	.	Parent=Os04t0518200-02
Chr04	irgsp1_rep	CDS	25914452	25914663	.	-	0	Parent=Os04t0518200-02
Chr04	irgsp1_rep	CDS	25914117	25914354	.	-	1	Parent=Os04t0518200-02
Chr04	irgsp1_rep	three_prime_UTR	25914030	25914116	.	-	.	Parent=Os04t0518200-02
Chr04	irgsp1_rep	three_prime_UTR	25912851	25913708	.	-	.	Parent=Os04t0518200-02
Chr04	irgsp1_rep	three_prime_UTR	25911583	25912245	.	-	.	Parent=Os04t0518200-02
Chr04	irgsp1_rep	mRNA	25927077	25929716	.	-	.	ID=Os04t0518400-01;Name=Os04t0518400-01;Locus_id=Os04g0518400;RAP-DB Gene Symbol Synonym(s)=OsPAL6;RAP-DB Gene Name Synonym(s)=Phenylalanine ammonia-lyase 6;Oryzabase Gene Symbol Synonym(s)=OsPAL07%2C OsPAL%2C PAL07%2C OsPAL6%2C PAL6%2C PAL1%2C OsPAL7%2C PAL7;Oryzabase Gene Name Synonym(s)=Phenylalanine ammonia-lyase 07;Note=Phenylalanine ammonia-lyase%2C Resistance to brown planthopper (BPH);Transcript_evidence=AK067801;ORF_evidence=Q7X8V3;GO=Biological Process: L-phenylalanine catabolic process (GO:0006559),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ammonia-lyase activity (GO:0016841),Cellular Component: cytoplasm (GO:0005737);InterPro=Fumarase/histidase%2C N-terminal (IPR024083),L-Aspartase-like (IPR008948),Phenylalanine ammonia-lyase%2C shielding domain superfamily (IPR023144),Aromatic amino acid lyase (IPR001106),Phenylalanine ammonia-lyase (IPR005922),Phenylalanine/histidine ammonia-lyases%2C active site (IPR022313);NIAS_FLcDNA=J013118I15;Manual Curation=December 20%2C 2019;Literature_PMID=31848246;Oryzabase=15681;Expression=AK067801;TENOR=Os04t0518400-01;KEGG=Os04t0518400-01 (EC:4.3.1.24)
Chr04	irgsp1_rep	five_prime_UTR	25929594	25929716	.	-	.	Parent=Os04t0518400-01
Chr04	irgsp1_rep	CDS	25929196	25929593	.	-	0	Parent=Os04t0518400-01
Chr04	irgsp1_rep	CDS	25927358	25929104	.	-	1	Parent=Os04t0518400-01
Chr04	irgsp1_rep	three_prime_UTR	25927077	25927357	.	-	.	Parent=Os04t0518400-01
Chr04	irgsp1_rep	mRNA	25943381	25944083	.	-	.	ID=Os04t0518600-01;Name=Os04t0518600-01;Locus_id=Os04g0518600;Note=Similar to OSIGBa0102I15.5 protein.;Transcript_evidence=AK063087 (DDBJ%2C Best hit);ORF_evidence=Q01IW5 (UniProt);NIAS_FLcDNA=001-111-A09;Expression=AK063087;TENOR=Os04t0518600-01;KEGG=Os04t0518600-01
Chr04	irgsp1_rep	five_prime_UTR	25944030	25944083	.	-	.	Parent=Os04t0518600-01
Chr04	irgsp1_rep	CDS	25943634	25944029	.	-	0	Parent=Os04t0518600-01
Chr04	irgsp1_rep	three_prime_UTR	25943381	25943633	.	-	.	Parent=Os04t0518600-01
Chr04	irgsp1_rep	mRNA	25944706	25946826	.	-	.	ID=Os04t0518650-01;Name=Os04t0518650-01;Locus_id=Os04g0518650;Note=Similar to OSIGBa0102I15.5 protein.;Transcript_evidence=AK242408 (DDBJ%2C Best hit);ORF_evidence=Q01IW5 (UniProt);InterPro=Small subunit of serine palmitoyltransferase-like (IPR024512);NIAS_FLcDNA=J080071L17;TENOR=Os04t0518650-01;KEGG=Os04t0518650-01
Chr04	irgsp1_rep	five_prime_UTR	25946817	25946826	.	-	.	Parent=Os04t0518650-01
Chr04	irgsp1_rep	CDS	25946657	25946816	.	-	0	Parent=Os04t0518650-01
Chr04	irgsp1_rep	CDS	25945287	25945347	.	-	2	Parent=Os04t0518650-01
Chr04	irgsp1_rep	CDS	25944823	25944883	.	-	1	Parent=Os04t0518650-01
Chr04	irgsp1_rep	three_prime_UTR	25944706	25944822	.	-	.	Parent=Os04t0518650-01
Chr04	irgsp1_rep	mRNA	25959399	25963504	.	+	.	ID=Os04t0518800-01;Name=Os04t0518800-01;Locus_id=Os04g0518800;RAP-DB Gene Symbol Synonym(s)=LABA1%2C LOGL6%2C OsLOGL6%2C An-2;RAP-DB Gene Name Synonym(s)=LONG AND BARBED AWN 1%2C LOG LIKE phosphoribohydrolase 6%2C LOG LIKE 6%2C LOG-like 6%2C Lonely Guy Like protein 6%2C long and barbed awn 1%2C Awn-2;CGSNL Gene Symbol=LABA1;CGSNL Gene Name=LONG AND BARBED AWN 1;Oryzabase Gene Symbol Synonym(s)=LOGL6%2C OsLOGL6%2C An-2;Oryzabase Gene Name Synonym(s)=LOG LIKE phosphoribohydrolase 6%2C LOG LIKE 6%2C LOG-like 6%2C Lonely Guy Like protein 6%2C long and barbed awn 1%2C Awn-2;Note=Cytokinin synthesis enzyme%2C Cytokinin-activating enzyme%2C Regulation of awn length and grain production;Transcript_evidence=AK069293;ORF_evidence=Q0JBP5;InterPro=LOG family (IPR031100),Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG (IPR005269);NIAS_FLcDNA=J023013B19;Manual Curation=December 21%2C 2016;Literature_PMID=26283047,26082172;Oryzabase=9851;Expression=AK069293;TENOR=Os04t0518800-01;KEGG=Os04t0518800-01
Chr04	irgsp1_rep	five_prime_UTR	25959399	25959517	.	+	.	Parent=Os04t0518800-01
Chr04	irgsp1_rep	CDS	25959518	25959682	.	+	0	Parent=Os04t0518800-01
Chr04	irgsp1_rep	CDS	25960648	25960745	.	+	0	Parent=Os04t0518800-01
Chr04	irgsp1_rep	CDS	25960938	25960968	.	+	1	Parent=Os04t0518800-01
Chr04	irgsp1_rep	CDS	25961748	25961847	.	+	0	Parent=Os04t0518800-01
Chr04	irgsp1_rep	CDS	25962638	25962708	.	+	2	Parent=Os04t0518800-01
Chr04	irgsp1_rep	CDS	25962849	25962992	.	+	0	Parent=Os04t0518800-01
Chr04	irgsp1_rep	CDS	25963124	25963267	.	+	0	Parent=Os04t0518800-01
Chr04	irgsp1_rep	three_prime_UTR	25963268	25963504	.	+	.	Parent=Os04t0518800-01
Chr04	irgsp1_rep	mRNA	25976917	25978859	.	-	.	ID=Os04t0519100-00;Name=Os04t0519100-00;Locus_id=Os04g0519100;Note=Similar to OSIGBa0102I15.8 protein.;Transcript_evidence=EU957030 (DDBJ);ORF_evidence=Q01MB5 (UniProt);InterPro=Transposase%2C Ptta/En/Spm%2C plant (IPR004252);TENOR=Os04t0519100-00;KEGG=Os04t0519100-00
Chr04	irgsp1_rep	CDS	25978407	25978859	.	-	0	Parent=Os04t0519100-00
Chr04	irgsp1_rep	CDS	25978073	25978285	.	-	0	Parent=Os04t0519100-00
Chr04	irgsp1_rep	CDS	25977895	25977987	.	-	0	Parent=Os04t0519100-00
Chr04	irgsp1_rep	CDS	25977348	25977451	.	-	0	Parent=Os04t0519100-00
Chr04	irgsp1_rep	CDS	25977152	25977263	.	-	1	Parent=Os04t0519100-00
Chr04	irgsp1_rep	three_prime_UTR	25976917	25977151	.	-	.	Parent=Os04t0519100-00
Chr04	irgsp1_rep	mRNA	25981345	25982277	.	-	.	ID=Os04t0519200-00;Name=Os04t0519200-00;Locus_id=Os04g0519200;Note=Similar to OSIGBa0132O24.3 protein.;Transcript_evidence=EU951279 (DDBJ);ORF_evidence=Q01MB4 (UniProt);TENOR=Os04t0519200-00
Chr04	irgsp1_rep	CDS	25981486	25982277	.	-	0	Parent=Os04t0519200-00
Chr04	irgsp1_rep	three_prime_UTR	25981345	25981485	.	-	.	Parent=Os04t0519200-00
Chr04	irgsp1_rep	mRNA	26013363	26016187	.	+	.	ID=Os04t0519700-01;Name=Os04t0519700-01;Locus_id=Os04g0519700;CGSNL Gene Symbol=ARF10;CGSNL Gene Name=AUXIN RESPONSE FACTOR 10;Oryzabase Gene Symbol Synonym(s)=OsARF10;Oryzabase Gene Name Synonym(s)=auxin response factor-10%2C auxin response factor 10;Note=Similar to Auxin response factor 10.;Transcript_evidence=AK100795 (DDBJ%2C Best hit);ORF_evidence=Q7XKK6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: response to hormone stimulus (GO:0009725),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),Auxin response factor (IPR010525),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=J023121F07;Oryzabase=10009;Expression=AK100795;TENOR=Os04t0519700-01;KEGG=Os04t0519700-01
Chr04	irgsp1_rep	five_prime_UTR	26013363	26013405	.	+	.	Parent=Os04t0519700-01
Chr04	irgsp1_rep	CDS	26013406	26014584	.	+	0	Parent=Os04t0519700-01
Chr04	irgsp1_rep	three_prime_UTR	26014585	26016187	.	+	.	Parent=Os04t0519700-01
Chr04	irgsp1_rep	mRNA	26024007	26025331	.	-	.	ID=Os04t0519900-01;Name=Os04t0519900-01;Locus_id=Os04g0519900;Note=Similar to OSIGBa0145G11.5 protein.;Transcript_evidence=AK071665 (DDBJ%2C Best hit);ORF_evidence=Q01I34 (UniProt);NIAS_FLcDNA=J023106J16;Expression=AK071665;TENOR=Os04t0519900-01;KEGG=Os04t0519900-01
Chr04	irgsp1_rep	five_prime_UTR	26025331	26025331	.	-	.	Parent=Os04t0519900-01
Chr04	irgsp1_rep	CDS	26024997	26025330	.	-	0	Parent=Os04t0519900-01
Chr04	irgsp1_rep	CDS	26024292	26024611	.	-	2	Parent=Os04t0519900-01
Chr04	irgsp1_rep	three_prime_UTR	26024007	26024291	.	-	.	Parent=Os04t0519900-01
Chr04	irgsp1_rep	mRNA	26024010	26033766	.	+	.	ID=Os04t0519912-00;Name=Os04t0519912-00;Locus_id=Os04g0519912;Note=Hypothetical protein.;Transcript_evidence=tplb0025b01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0519912-00
Chr04	irgsp1_rep	five_prime_UTR	26024010	26024597	.	+	.	Parent=Os04t0519912-00
Chr04	irgsp1_rep	five_prime_UTR	26024987	26025187	.	+	.	Parent=Os04t0519912-00
Chr04	irgsp1_rep	CDS	26025188	26025358	.	+	0	Parent=Os04t0519912-00
Chr04	irgsp1_rep	CDS	26026117	26026218	.	+	0	Parent=Os04t0519912-00
Chr04	irgsp1_rep	CDS	26026421	26026474	.	+	0	Parent=Os04t0519912-00
Chr04	irgsp1_rep	three_prime_UTR	26026475	26026544	.	+	.	Parent=Os04t0519912-00
Chr04	irgsp1_rep	three_prime_UTR	26026710	26026865	.	+	.	Parent=Os04t0519912-00
Chr04	irgsp1_rep	three_prime_UTR	26026938	26027492	.	+	.	Parent=Os04t0519912-00
Chr04	irgsp1_rep	three_prime_UTR	26027677	26027815	.	+	.	Parent=Os04t0519912-00
Chr04	irgsp1_rep	three_prime_UTR	26029021	26029144	.	+	.	Parent=Os04t0519912-00
Chr04	irgsp1_rep	three_prime_UTR	26029577	26029651	.	+	.	Parent=Os04t0519912-00
Chr04	irgsp1_rep	three_prime_UTR	26029985	26030052	.	+	.	Parent=Os04t0519912-00
Chr04	irgsp1_rep	three_prime_UTR	26031043	26031202	.	+	.	Parent=Os04t0519912-00
Chr04	irgsp1_rep	three_prime_UTR	26031906	26032145	.	+	.	Parent=Os04t0519912-00
Chr04	irgsp1_rep	three_prime_UTR	26033463	26033766	.	+	.	Parent=Os04t0519912-00
Chr04	irgsp1_rep	mRNA	26027651	26033771	.	-	.	ID=Os04t0519925-00;Name=Os04t0519925-00;Locus_id=Os04g0519925;Note=Similar to OSIGBa0145G11.5 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01I34 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: peptidase activity (GO:0008233);InterPro=Peptidase M28 (IPR007484);TENOR=Os04t0519925-00;KEGG=Os04t0519925-00
Chr04	irgsp1_rep	CDS	26033463	26033771	.	-	0	Parent=Os04t0519925-00
Chr04	irgsp1_rep	CDS	26031973	26032145	.	-	0	Parent=Os04t0519925-00
Chr04	irgsp1_rep	CDS	26031047	26031203	.	-	1	Parent=Os04t0519925-00
Chr04	irgsp1_rep	CDS	26029978	26030055	.	-	0	Parent=Os04t0519925-00
Chr04	irgsp1_rep	CDS	26029578	26029649	.	-	0	Parent=Os04t0519925-00
Chr04	irgsp1_rep	CDS	26027651	26027821	.	-	0	Parent=Os04t0519925-00
Chr04	irgsp1_rep	mRNA	26035831	26035995	.	-	.	ID=Os04t0519950-00;Name=Os04t0519950-00;Locus_id=Os04g0519950;Note=Non-protein coding transcript.;Transcript_evidence=EU954591 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0519950-00
Chr04	irgsp1_rep	exon	26035831	26035995	.	-	.	Parent=Os04t0519950-00
Chr04	irgsp1_rep	mRNA	26036008	26036203	.	-	.	ID=Os04t0519975-00;Name=Os04t0519975-00;Locus_id=Os04g0519975;Note=Similar to photosystem I subunit IX.;Transcript_evidence=EU954469 (DDBJ);ORF_evidence=YP_784493.1 (RefSeq);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem I (GO:0009522);InterPro=Photosystem I PsaJ%2C reaction centre subunit IX (IPR002615);TENOR=Os04t0519975-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	26036101	26036203	.	-	.	Parent=Os04t0519975-00
Chr04	irgsp1_rep	CDS	26036008	26036100	.	-	0	Parent=Os04t0519975-00
Chr04	irgsp1_rep	mRNA	26036828	26041443	.	-	.	ID=Os04t0520000-01;Name=Os04t0520000-01;Locus_id=Os04g0520000;Note=S1%2C RNA binding domain containing protein.;Transcript_evidence=AK102988 (DDBJ%2C Best hit);ORF_evidence=Q01I33 (UniProt);InterPro=RNA-binding domain%2C S1 (IPR022967);NIAS_FLcDNA=J033116C14;Expression=AK102988;TENOR=Os04t0520000-01;KEGG=Os04t0520000-01
Chr04	irgsp1_rep	five_prime_UTR	26041251	26041443	.	-	.	Parent=Os04t0520000-01
Chr04	irgsp1_rep	CDS	26041108	26041250	.	-	0	Parent=Os04t0520000-01
Chr04	irgsp1_rep	CDS	26040874	26040975	.	-	1	Parent=Os04t0520000-01
Chr04	irgsp1_rep	CDS	26040139	26040184	.	-	1	Parent=Os04t0520000-01
Chr04	irgsp1_rep	CDS	26039722	26039811	.	-	0	Parent=Os04t0520000-01
Chr04	irgsp1_rep	CDS	26038909	26038974	.	-	0	Parent=Os04t0520000-01
Chr04	irgsp1_rep	CDS	26038042	26038110	.	-	0	Parent=Os04t0520000-01
Chr04	irgsp1_rep	CDS	26037118	26037549	.	-	0	Parent=Os04t0520000-01
Chr04	irgsp1_rep	three_prime_UTR	26036828	26037117	.	-	.	Parent=Os04t0520000-01
Chr04	irgsp1_rep	mRNA	26074703	26075861	.	-	.	ID=Os04t0520700-01;Name=Os04t0520700-01;Locus_id=Os04g0520700;RAP-DB Gene Symbol Synonym(s)=OsS40-13;RAP-DB Gene Name Synonym(s)=S40 protein 13;CGSNL Gene Symbol=S40-13;CGSNL Gene Name=S40 PROTEIN 13;Oryzabase Gene Symbol Synonym(s)=OsS40-13;Oryzabase Gene Name Synonym(s)=S40 protein 13;Note=A member of S40 gene family%2C Leaf senescence%2C Response to pathogen infection;Transcript_evidence=AK065832;ORF_evidence=Q7XUA4;InterPro=Senescence regulator S40 (IPR007608);NIAS_FLcDNA=J013036A08;Manual Curation=November 12%2C 2019;Literature_PMID=31046677;Oryzabase=22083;Expression=AK065832;TENOR=Os04t0520700-01;KEGG=Os04t0520700-01;Subcellular location=nucleus (GO:0005634)
Chr04	irgsp1_rep	five_prime_UTR	26075639	26075861	.	-	.	Parent=Os04t0520700-01
Chr04	irgsp1_rep	CDS	26075114	26075638	.	-	0	Parent=Os04t0520700-01
Chr04	irgsp1_rep	three_prime_UTR	26074703	26075113	.	-	.	Parent=Os04t0520700-01
Chr04	irgsp1_rep	mRNA	26087337	26088122	.	+	.	ID=Os04t0520800-00;Name=Os04t0520800-00;Locus_id=Os04g0520800;Note=Hypothetical conserved gene.;Transcript_evidence=AK111357 (DDBJ%2C Secondary hit);ORF_evidence=Q6YXA4 (UniProt);Expression=AK111357;TENOR=Os04t0520800-00;KEGG=Os04t0520800-00
Chr04	irgsp1_rep	five_prime_UTR	26087337	26087548	.	+	.	Parent=Os04t0520800-00
Chr04	irgsp1_rep	five_prime_UTR	26087651	26087680	.	+	.	Parent=Os04t0520800-00
Chr04	irgsp1_rep	CDS	26087681	26087893	.	+	0	Parent=Os04t0520800-00
Chr04	irgsp1_rep	three_prime_UTR	26087894	26088122	.	+	.	Parent=Os04t0520800-00
Chr04	irgsp1_rep	mRNA	26090701	26093766	.	+	.	ID=Os04t0520900-01;Name=Os04t0520900-01;Locus_id=Os04g0520900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK068793 (DDBJ%2C Best hit);ORF_evidence=Q01IB9 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J013164F23;Expression=AK068793;TENOR=Os04t0520900-01;KEGG=Os04t0520900-01
Chr04	irgsp1_rep	five_prime_UTR	26090701	26090742	.	+	.	Parent=Os04t0520900-01
Chr04	irgsp1_rep	CDS	26090743	26092137	.	+	0	Parent=Os04t0520900-01
Chr04	irgsp1_rep	three_prime_UTR	26092138	26093766	.	+	.	Parent=Os04t0520900-01
Chr04	irgsp1_rep	mRNA	26091600	26093766	.	+	.	ID=Os04t0520900-02;Name=Os04t0520900-02;Locus_id=Os04g0520900;Note=Similar to OSIGBa0131L05.6 protein.;Transcript_evidence=AK105606 (DDBJ%2C Best hit);ORF_evidence=Q01IB9 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=001-200-A12;Expression=AK105606;TENOR=Os04t0520900-02;KEGG=Os04t0520900-02
Chr04	irgsp1_rep	five_prime_UTR	26091600	26091600	.	+	.	Parent=Os04t0520900-02
Chr04	irgsp1_rep	CDS	26091601	26092137	.	+	0	Parent=Os04t0520900-02
Chr04	irgsp1_rep	three_prime_UTR	26092138	26093766	.	+	.	Parent=Os04t0520900-02
Chr04	irgsp1_rep	mRNA	26099189	26101434	.	-	.	ID=Os04t0521001-00;Name=Os04t0521001-00;Locus_id=Os04g0521001;Note=Hypothetical protein.;Transcript_evidence=FP096444 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0521001-00
Chr04	irgsp1_rep	five_prime_UTR	26101304	26101434	.	-	.	Parent=Os04t0521001-00
Chr04	irgsp1_rep	five_prime_UTR	26100793	26100794	.	-	.	Parent=Os04t0521001-00
Chr04	irgsp1_rep	CDS	26100657	26100792	.	-	0	Parent=Os04t0521001-00
Chr04	irgsp1_rep	CDS	26099315	26099946	.	-	2	Parent=Os04t0521001-00
Chr04	irgsp1_rep	three_prime_UTR	26099189	26099314	.	-	.	Parent=Os04t0521001-00
Chr04	irgsp1_rep	mRNA	26099273	26101764	.	+	.	ID=Os04t0521100-01;Name=Os04t0521100-01;Locus_id=Os04g0521100;CGSNL Gene Symbol=PIP2%3B3;CGSNL Gene Name=PLASMA MEMBRANE INTRINSIC PROTEIN 2%3B3;Oryzabase Gene Symbol Synonym(s)=OsPIP2%3B3%2C PIP2-3%2C OsPIP2-2;Oryzabase Gene Name Synonym(s)=Probable aquaporin PIP2-3%2C Plasma membrane intrinsic protein 2-3%2C aquaporin 2%3B3;Note=Major intrinsic protein family protein.;Transcript_evidence=AK243592 (DDBJ%2C Best hit);ORF_evidence=Q01IB8 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: water transport (GO:0006833),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Aquaporin (IPR012269),Major intrinsic protein%2C conserved site (IPR022357),Aquaporin-like (IPR023271);NIAS_FLcDNA=J100083L19;Oryzabase=7309;TENOR=Os04t0521100-01;KEGG=Os04t0521100-01
Chr04	irgsp1_rep	five_prime_UTR	26099273	26099329	.	+	.	Parent=Os04t0521100-01
Chr04	irgsp1_rep	CDS	26099330	26099947	.	+	0	Parent=Os04t0521100-01
Chr04	irgsp1_rep	CDS	26100658	26100798	.	+	0	Parent=Os04t0521100-01
Chr04	irgsp1_rep	CDS	26101308	26101421	.	+	0	Parent=Os04t0521100-01
Chr04	irgsp1_rep	three_prime_UTR	26101422	26101764	.	+	.	Parent=Os04t0521100-01
Chr04	irgsp1_rep	mRNA	26103781	26105940	.	+	.	ID=Os04t0521300-01;Name=Os04t0521300-01;Locus_id=Os04g0521300;Note=Conserved hypothetical protein.;Transcript_evidence=AK071350 (DDBJ%2C Best hit);ORF_evidence=B9FG70 (UniProt);NIAS_FLcDNA=J023092A16;Expression=AK071350;TENOR=Os04t0521300-01;KEGG=Os04t0521300-01
Chr04	irgsp1_rep	five_prime_UTR	26103781	26103862	.	+	.	Parent=Os04t0521300-01
Chr04	irgsp1_rep	CDS	26103863	26104132	.	+	0	Parent=Os04t0521300-01
Chr04	irgsp1_rep	three_prime_UTR	26104133	26105940	.	+	.	Parent=Os04t0521300-01
Chr04	irgsp1_rep	mRNA	26108162	26111320	.	+	.	ID=Os04t0521600-01;Name=Os04t0521600-01;Locus_id=Os04g0521600;Oryzabase Gene Symbol Synonym(s)=OsSTA127%2C STA127;Note=Similar to OSIGBa0131L05.8 protein.;Transcript_evidence=AK102243 (DDBJ%2C Best hit);ORF_evidence=Q01IB3 (UniProt);NIAS_FLcDNA=J033088E04;Oryzabase=19416;TENOR=Os04t0521600-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	26108162	26108432	.	+	.	Parent=Os04t0521600-01
Chr04	irgsp1_rep	CDS	26108433	26110462	.	+	0	Parent=Os04t0521600-01
Chr04	irgsp1_rep	CDS	26110635	26110761	.	+	1	Parent=Os04t0521600-01
Chr04	irgsp1_rep	CDS	26110879	26110980	.	+	0	Parent=Os04t0521600-01
Chr04	irgsp1_rep	CDS	26111122	26111178	.	+	0	Parent=Os04t0521600-01
Chr04	irgsp1_rep	three_prime_UTR	26111179	26111320	.	+	.	Parent=Os04t0521600-01
Chr04	irgsp1_rep	mRNA	26111689	26113913	.	+	.	ID=Os04t0521700-01;Name=Os04t0521700-01;Locus_id=Os04g0521700;Note=Similar to OSIGBa0131L05.9 protein.;Transcript_evidence=AK073622 (DDBJ%2C Best hit);ORF_evidence=Q01IB2 (UniProt);NIAS_FLcDNA=J033049O03;Expression=AK073622;TENOR=Os04t0521700-01;KEGG=Os04t0521700-01
Chr04	irgsp1_rep	five_prime_UTR	26111689	26111736	.	+	.	Parent=Os04t0521700-01
Chr04	irgsp1_rep	CDS	26111737	26112210	.	+	0	Parent=Os04t0521700-01
Chr04	irgsp1_rep	three_prime_UTR	26112211	26112216	.	+	.	Parent=Os04t0521700-01
Chr04	irgsp1_rep	three_prime_UTR	26113427	26113913	.	+	.	Parent=Os04t0521700-01
Chr04	irgsp1_rep	mRNA	26114744	26118273	.	+	.	ID=Os04t0521800-01;Name=Os04t0521800-01;Locus_id=Os04g0521800;CGSNL Gene Symbol=AH1;CGSNL Gene Name=AMIDOHYDROLASE 1;Oryzabase Gene Symbol Synonym(s)=OsAH1;Oryzabase Gene Name Synonym(s)=amidohydrolase 1;Note=Peptidase M20 family protein.;Transcript_evidence=AK102934 (DDBJ%2C Best hit),AK061536 (DDBJ%2C Best hit);ORF_evidence=Q01IB1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Peptidase M20 (IPR002933),Peptidase M20%2C dimerisation (IPR011650),Amidohydrolase (IPR017439);NIAS_FLcDNA=J033114I03,006-310-F08;Oryzabase=23116;Expression=AK102934;TENOR=Os04t0521800-01;KEGG=Os04t0521800-01
Chr04	irgsp1_rep	five_prime_UTR	26114744	26114800	.	+	.	Parent=Os04t0521800-01
Chr04	irgsp1_rep	CDS	26114801	26115112	.	+	0	Parent=Os04t0521800-01
Chr04	irgsp1_rep	CDS	26115362	26115487	.	+	0	Parent=Os04t0521800-01
Chr04	irgsp1_rep	CDS	26115856	26116170	.	+	0	Parent=Os04t0521800-01
Chr04	irgsp1_rep	CDS	26117191	26117319	.	+	0	Parent=Os04t0521800-01
Chr04	irgsp1_rep	CDS	26117728	26118126	.	+	0	Parent=Os04t0521800-01
Chr04	irgsp1_rep	three_prime_UTR	26118127	26118273	.	+	.	Parent=Os04t0521800-01
Chr04	irgsp1_rep	mRNA	26114769	26117220	.	+	.	ID=Os04t0521800-02;Name=Os04t0521800-02;Locus_id=Os04g0521800;CGSNL Gene Symbol=AH1;CGSNL Gene Name=AMIDOHYDROLASE 1;Oryzabase Gene Symbol Synonym(s)=OsAH1;Oryzabase Gene Name Synonym(s)=amidohydrolase 1;Note=Similar to OSIGBa0131L05.10 protein.;Transcript_evidence=AK103369 (DDBJ%2C Best hit);ORF_evidence=Q01IB1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Peptidase M20 (IPR002933),Peptidase M20%2C dimerisation (IPR011650),Amidohydrolase (IPR017439);NIAS_FLcDNA=J033126P16;Oryzabase=23116;Expression=AK103369;TENOR=Os04t0521800-02;KEGG=Os04t0521800-02
Chr04	irgsp1_rep	five_prime_UTR	26114769	26114800	.	+	.	Parent=Os04t0521800-02
Chr04	irgsp1_rep	CDS	26114801	26115112	.	+	0	Parent=Os04t0521800-02
Chr04	irgsp1_rep	CDS	26115362	26115487	.	+	0	Parent=Os04t0521800-02
Chr04	irgsp1_rep	CDS	26115856	26116170	.	+	0	Parent=Os04t0521800-02
Chr04	irgsp1_rep	CDS	26117191	26117220	.	+	0	Parent=Os04t0521800-02
Chr04	irgsp1_rep	mRNA	26118248	26119023	.	-	.	ID=Os04t0521900-01;Name=Os04t0521900-01;Locus_id=Os04g0521900;Note=Similar to Vegetative cell wall protein gp1.;Transcript_evidence=AK105173 (DDBJ%2C Best hit);ORF_evidence=B6SY74 (UniProt);NIAS_FLcDNA=001-104-G07;Expression=AK105173;TENOR=Os04t0521900-01;KEGG=Os04t0521900-01
Chr04	irgsp1_rep	five_prime_UTR	26118935	26119023	.	-	.	Parent=Os04t0521900-01
Chr04	irgsp1_rep	CDS	26118446	26118934	.	-	0	Parent=Os04t0521900-01
Chr04	irgsp1_rep	three_prime_UTR	26118248	26118445	.	-	.	Parent=Os04t0521900-01
Chr04	irgsp1_rep	mRNA	26120339	26120817	.	+	.	ID=Os04t0522100-01;Name=Os04t0522100-01;Locus_id=Os04g0522100;RAP-DB Gene Symbol Synonym(s)=CAL2;RAP-DB Gene Name Synonym(s)=cadmium accumulation in leaf 2;Oryzabase Gene Symbol Synonym(s)=DEFL12%2C OsDEFL12%2C OsDf-12%2C Df-12;Oryzabase Gene Name Synonym(s)=defensin-like 12;Note=Defensin protein%2C Cadmium accumulation;Transcript_evidence=XM_015780888;ORF_evidence=Q7XUA9;GO=Biological Process: defense response (GO:0006952);InterPro=Knottin%2C scorpion toxin-like superfamily (IPR036574),Defensin%2C plant (IPR008176),Knottin%2C scorpion toxin-like (IPR003614);Manual Curation=March 17%2C 2020;Literature_PMID=32174951;Oryzabase=21079;TENOR=Os04t0522100-00;Subcellular location=cell wall (GO:0005618)
Chr04	irgsp1_rep	five_prime_UTR	26120339	26120423	.	+	.	Parent=Os04t0522100-01
Chr04	irgsp1_rep	CDS	26120424	26120490	.	+	0	Parent=Os04t0522100-01
Chr04	irgsp1_rep	CDS	26120606	26120784	.	+	2	Parent=Os04t0522100-01
Chr04	irgsp1_rep	three_prime_UTR	26120785	26120817	.	+	.	Parent=Os04t0522100-01
Chr04	irgsp1_rep	mRNA	26130711	26134356	.	-	.	ID=Os04t0522500-01;Name=Os04t0522500-01;Locus_id=Os04g0522500;RAP-DB Gene Symbol Synonym(s)=GA2ox6%2C OsGA2ox6;RAP-DB Gene Name Synonym(s)=GA 2-oxidase 6%2C gibberellin 2-oxidase 6;CGSNL Gene Symbol=GA2OX6;CGSNL Gene Name=GIBBERELLIN 2-OXIDASE 6;Oryzabase Gene Symbol Synonym(s)=OsGA2ox6;Oryzabase Gene Name Synonym(s)=GA 2-oxidase 6;Note=Gibberellin (GA) 2-oxidase%2C Regulation of plant stature%2C Abiotic and biotic stress tolerance;Transcript_evidence=AK107142;ORF_evidence=Q7XP65;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Isopenicillin N synthase-like (IPR027443),Non-haem dioxygenase N-terminal domain (IPR026992),Oxoglutarate/iron-dependent dioxygenase (IPR005123);NIAS_FLcDNA=002-124-D04;Manual Curation=June 2%2C 2020;Literature_PMID=27998028,20171575;Oryzabase=9082;Expression=AK107142;TENOR=Os04t0522500-01;KEGG=Os04t0522500-01;Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737)
Chr04	irgsp1_rep	five_prime_UTR	26134221	26134356	.	-	.	Parent=Os04t0522500-01
Chr04	irgsp1_rep	CDS	26133733	26134220	.	-	0	Parent=Os04t0522500-01
Chr04	irgsp1_rep	CDS	26131345	26131687	.	-	1	Parent=Os04t0522500-01
Chr04	irgsp1_rep	CDS	26130919	26131164	.	-	0	Parent=Os04t0522500-01
Chr04	irgsp1_rep	three_prime_UTR	26130711	26130918	.	-	.	Parent=Os04t0522500-01
Chr04	irgsp1_rep	mRNA	26130926	26134226	.	+	.	ID=Os04t0522625-00;Name=Os04t0522625-00;Locus_id=Os04g0522625;Note=Hypothetical protein.;Transcript_evidence=tplb0055j06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0522625-00
Chr04	irgsp1_rep	five_prime_UTR	26130926	26131163	.	+	.	Parent=Os04t0522625-00
Chr04	irgsp1_rep	five_prime_UTR	26131344	26131360	.	+	.	Parent=Os04t0522625-00
Chr04	irgsp1_rep	CDS	26131361	26131686	.	+	0	Parent=Os04t0522625-00
Chr04	irgsp1_rep	CDS	26133732	26134173	.	+	1	Parent=Os04t0522625-00
Chr04	irgsp1_rep	three_prime_UTR	26134174	26134226	.	+	.	Parent=Os04t0522625-00
Chr04	irgsp1_rep	mRNA	26158845	26166779	.	+	.	ID=Os04t0522800-01;Name=Os04t0522800-01;Locus_id=Os04g0522800;Note=Photosystem II oxygen evolving complex protein PsbQ family protein.;Transcript_evidence=AK068328 (DDBJ%2C Best hit);ORF_evidence=B8AS39 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: oxygen evolving complex (GO:0009654),Cellular Component: extrinsic to membrane (GO:0019898),Molecular Function: calcium ion binding (GO:0005509);InterPro=Photosystem II PsbQ%2C oxygen evolving complex (IPR008797),PsbQ-like domain (IPR023222);NIAS_FLcDNA=J013146P05;Expression=AK068328;TENOR=Os04t0522800-01;KEGG=Os04t0522800-01
Chr04	irgsp1_rep	five_prime_UTR	26158845	26158950	.	+	.	Parent=Os04t0522800-01
Chr04	irgsp1_rep	five_prime_UTR	26165503	26165553	.	+	.	Parent=Os04t0522800-01
Chr04	irgsp1_rep	CDS	26165554	26165802	.	+	0	Parent=Os04t0522800-01
Chr04	irgsp1_rep	CDS	26166391	26166498	.	+	0	Parent=Os04t0522800-01
Chr04	irgsp1_rep	three_prime_UTR	26166499	26166779	.	+	.	Parent=Os04t0522800-01
Chr04	irgsp1_rep	mRNA	26167892	26169988	.	+	.	ID=Os04t0523000-00;Name=Os04t0523000-00;Locus_id=Os04g0523000;Note=Photosystem II oxygen evolving complex protein PsbQ family protein.;Transcript_evidence=AK364127 (DDBJ);ORF_evidence=B6SQ77 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: oxygen evolving complex (GO:0009654),Cellular Component: extrinsic to membrane (GO:0019898),Molecular Function: calcium ion binding (GO:0005509);InterPro=Photosystem II PsbQ%2C oxygen evolving complex (IPR008797),PsbQ-like domain (IPR023222);TENOR=Os04t0523000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	26167892	26168350	.	+	0	Parent=Os04t0523000-00
Chr04	irgsp1_rep	CDS	26168440	26168538	.	+	0	Parent=Os04t0523000-00
Chr04	irgsp1_rep	three_prime_UTR	26168539	26169198	.	+	.	Parent=Os04t0523000-00
Chr04	irgsp1_rep	three_prime_UTR	26169432	26169556	.	+	.	Parent=Os04t0523000-00
Chr04	irgsp1_rep	three_prime_UTR	26169735	26169988	.	+	.	Parent=Os04t0523000-00
Chr04	irgsp1_rep	mRNA	26168660	26173714	.	-	.	ID=Os04t0523100-01;Name=Os04t0523100-01;Locus_id=Os04g0523100;Note=Similar to OSIGBa0153E02-OSIGBa0093I20.5 protein.;Transcript_evidence=AK119597 (DDBJ%2C Best hit);ORF_evidence=Q01HS0 (UniProt);InterPro=Protein of unknown function DUF3755 (IPR022228);NIAS_FLcDNA=002-117-D12;TENOR=Os04t0523100-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	26173512	26173714	.	-	.	Parent=Os04t0523100-01
Chr04	irgsp1_rep	five_prime_UTR	26172473	26172666	.	-	.	Parent=Os04t0523100-01
Chr04	irgsp1_rep	CDS	26172174	26172472	.	-	0	Parent=Os04t0523100-01
Chr04	irgsp1_rep	CDS	26171832	26171931	.	-	1	Parent=Os04t0523100-01
Chr04	irgsp1_rep	CDS	26170781	26170849	.	-	0	Parent=Os04t0523100-01
Chr04	irgsp1_rep	CDS	26170184	26170298	.	-	0	Parent=Os04t0523100-01
Chr04	irgsp1_rep	CDS	26169815	26169903	.	-	2	Parent=Os04t0523100-01
Chr04	irgsp1_rep	CDS	26169445	26169506	.	-	0	Parent=Os04t0523100-01
Chr04	irgsp1_rep	CDS	26169255	26169351	.	-	1	Parent=Os04t0523100-01
Chr04	irgsp1_rep	CDS	26169119	26169169	.	-	0	Parent=Os04t0523100-01
Chr04	irgsp1_rep	three_prime_UTR	26168660	26169118	.	-	.	Parent=Os04t0523100-01
Chr04	irgsp1_rep	mRNA	26168663	26173022	.	-	.	ID=Os04t0523100-02;Name=Os04t0523100-02;Locus_id=Os04g0523100;Note=Similar to OSIGBa0153E02-OSIGBa0093I20.5 protein.;Transcript_evidence=AK072416 (DDBJ%2C Best hit);ORF_evidence=Q01HS0 (UniProt);NIAS_FLcDNA=J023088J02;TENOR=Os04t0523100-02;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	26172473	26173022	.	-	.	Parent=Os04t0523100-02
Chr04	irgsp1_rep	CDS	26172174	26172472	.	-	0	Parent=Os04t0523100-02
Chr04	irgsp1_rep	CDS	26171832	26171931	.	-	1	Parent=Os04t0523100-02
Chr04	irgsp1_rep	CDS	26170781	26170849	.	-	0	Parent=Os04t0523100-02
Chr04	irgsp1_rep	CDS	26170176	26170298	.	-	0	Parent=Os04t0523100-02
Chr04	irgsp1_rep	three_prime_UTR	26169815	26170175	.	-	.	Parent=Os04t0523100-02
Chr04	irgsp1_rep	three_prime_UTR	26169445	26169506	.	-	.	Parent=Os04t0523100-02
Chr04	irgsp1_rep	three_prime_UTR	26169255	26169351	.	-	.	Parent=Os04t0523100-02
Chr04	irgsp1_rep	three_prime_UTR	26168663	26169169	.	-	.	Parent=Os04t0523100-02
Chr04	irgsp1_rep	mRNA	26177249	26179831	.	-	.	ID=Os04t0523200-01;Name=Os04t0523200-01;Locus_id=Os04g0523200;Note=Up-frameshift suppressor 2 domain containing protein.;Transcript_evidence=AK119440 (DDBJ%2C Best hit);ORF_evidence=B9FG77 (UniProt);InterPro=Up-frameshift suppressor 2 (IPR007193);NIAS_FLcDNA=001-133-C02;TENOR=Os04t0523200-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	26179788	26179831	.	-	.	Parent=Os04t0523200-01
Chr04	irgsp1_rep	CDS	26179449	26179787	.	-	0	Parent=Os04t0523200-01
Chr04	irgsp1_rep	three_prime_UTR	26177249	26179448	.	-	.	Parent=Os04t0523200-01
Chr04	irgsp1_rep	mRNA	26183370	26183921	.	-	.	ID=Os04t0523350-00;Name=Os04t0523350-00;Locus_id=Os04g0523350;Note=Similar to Initiation factor eIF-4 gamma%2C middle%3B Up-frameshift suppressor 2.;Transcript_evidence=EU942804 (DDBJ);ORF_evidence=Q2HSQ9 (UniProt);GO=Biological Process: RNA metabolic process (GO:0016070),Molecular Function: binding (GO:0005488);InterPro=MIF4-like%2C type 1/2/3 (IPR016021),Armadillo-type fold (IPR016024);TENOR=Os04t0523350-00;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	26183694	26183921	.	-	0	Parent=Os04t0523350-00
Chr04	irgsp1_rep	CDS	26183370	26183612	.	-	0	Parent=Os04t0523350-00
Chr04	irgsp1_rep	mRNA	26199141	26203656	.	+	.	ID=Os04t0523500-00;Name=Os04t0523500-00;Locus_id=Os04g0523500;CGSNL Gene Symbol=CKX8;CGSNL Gene Name=CYTOKININ  OXIDASE/DEHYDROGENASE 8;Oryzabase Gene Symbol Synonym(s)=OsCKX8;Oryzabase Gene Name Synonym(s)=cytokinin oxidase 8;Note=Hypothetical conserved gene.;Transcript_evidence=GU160403 (DDBJ);ORF_evidence=A3AVP1 (UniProt);GO=Biological Process: cytokinin metabolic process (GO:0009690),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: cytokinin dehydrogenase activity (GO:0019139),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=FAD linked oxidase%2C N-terminal (IPR006094),Cytokinin dehydrogenase 1%2C FAD/cytokinin binding domain (IPR015345),FAD-linked oxidase-like%2C C-terminal (IPR016164),FAD-binding%2C type 2 (IPR016166),FAD-linked oxidase%2C FAD-binding%2C subdomain 2 (IPR016168);Oryzabase=8398;TENOR=Os04t0523500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	26199141	26199151	.	+	.	Parent=Os04t0523500-00
Chr04	irgsp1_rep	CDS	26199152	26199746	.	+	0	Parent=Os04t0523500-00
Chr04	irgsp1_rep	CDS	26199903	26200030	.	+	2	Parent=Os04t0523500-00
Chr04	irgsp1_rep	CDS	26200163	26200423	.	+	0	Parent=Os04t0523500-00
Chr04	irgsp1_rep	CDS	26200545	26200807	.	+	0	Parent=Os04t0523500-00
Chr04	irgsp1_rep	CDS	26203305	26203656	.	+	1	Parent=Os04t0523500-00
Chr04	irgsp1_rep	mRNA	26206039	26207769	.	-	.	ID=Os04t0523600-01;Name=Os04t0523600-01;Locus_id=Os04g0523600;Note=Similar to OSIGBa0153E02-OSIGBa0093I20.8 protein.;Transcript_evidence=AK070948 (DDBJ%2C Best hit);ORF_evidence=Q01HR7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J023072D17;TENOR=Os04t0523600-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	26207734	26207769	.	-	.	Parent=Os04t0523600-01
Chr04	irgsp1_rep	CDS	26206225	26207733	.	-	0	Parent=Os04t0523600-01
Chr04	irgsp1_rep	three_prime_UTR	26206039	26206224	.	-	.	Parent=Os04t0523600-01
Chr04	irgsp1_rep	mRNA	26206388	26207900	.	+	.	ID=Os04t0523650-01;Name=Os04t0523650-01;Locus_id=Os04g0523650;Note=Hypothetical protein.;Transcript_evidence=AK242174 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J075158H11;TENOR=Os04t0523650-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	26206388	26206435	.	+	.	Parent=Os04t0523650-01
Chr04	irgsp1_rep	CDS	26206436	26207314	.	+	0	Parent=Os04t0523650-01
Chr04	irgsp1_rep	three_prime_UTR	26207315	26207900	.	+	.	Parent=Os04t0523650-01
Chr04	irgsp1_rep	mRNA	26214048	26215366	.	+	.	ID=Os04t0523812-00;Name=Os04t0523812-00;Locus_id=Os04g0523812;Note=Conserved hypothetical protein.;Transcript_evidence=EU964909 (DDBJ);ORF_evidence=B9FG79 (UniProt);TENOR=Os04t0523812-00
Chr04	irgsp1_rep	five_prime_UTR	26214048	26214148	.	+	.	Parent=Os04t0523812-00
Chr04	irgsp1_rep	CDS	26214149	26214946	.	+	0	Parent=Os04t0523812-00
Chr04	irgsp1_rep	three_prime_UTR	26214947	26215366	.	+	.	Parent=Os04t0523812-00
Chr04	irgsp1_rep	mRNA	26218133	26218839	.	+	.	ID=Os04t0524136-00;Name=Os04t0524136-00;Locus_id=Os04g0524136;Note=Similar to Thioredoxin reductase.;Transcript_evidence=AJ421947 (DDBJ);ORF_evidence=B8B1A9 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Pyridine nucleotide-disulphide oxidoreductase%2C class-II (IPR000103);TENOR=Os04t0524136-00
Chr04	irgsp1_rep	CDS	26218133	26218732	.	+	0	Parent=Os04t0524136-00
Chr04	irgsp1_rep	three_prime_UTR	26218733	26218839	.	+	.	Parent=Os04t0524136-00
Chr04	irgsp1_rep	mRNA	26227217	26228435	.	+	.	ID=Os04t0524300-01;Name=Os04t0524300-01;Locus_id=Os04g0524300;RAP-DB Gene Symbol Synonym(s)=RR5%2C rr5%2C OsRR5%2C Rra4%2C OsRRA4;RAP-DB Gene Name Synonym(s)=A-TYPE RESPONSE REGULATOR 5%2C A-TYPE response regulator 5%2C Type A response regulator 5%2C A-type RR 4;CGSNL Gene Symbol=RR5;CGSNL Gene Name=A-TYPE RESPONSE REGULATOR 5;Oryzabase Gene Symbol Synonym(s)=rr5%2C OsRR5%2C Rra4%2C OsRRA4;Oryzabase Gene Name Synonym(s)=A-TYPE response regulator 5%2C Type A response regulator 5%2C A-type RR 4;Note=A-type response regulator%2C Cytokinin signaling;Transcript_evidence=AK106426 (DDBJ),AB249654 (DDBJ),BR000314 (DDBJ);ORF_evidence=Q2HWH1 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: two-component response regulator activity (GO:0000156);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),CheY-like superfamily (IPR011006);NIAS_FLcDNA=002-103-B09;Manual Curation=April 22%2C 2010;Literature_PMID=16919402,16472405,17293362;Oryzabase=8162;TENOR=Os04t0524300-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	26227217	26227291	.	+	.	Parent=Os04t0524300-01
Chr04	irgsp1_rep	CDS	26227292	26227412	.	+	0	Parent=Os04t0524300-01
Chr04	irgsp1_rep	CDS	26227490	26227536	.	+	2	Parent=Os04t0524300-01
Chr04	irgsp1_rep	CDS	26227639	26227716	.	+	0	Parent=Os04t0524300-01
Chr04	irgsp1_rep	CDS	26227828	26227898	.	+	0	Parent=Os04t0524300-01
Chr04	irgsp1_rep	CDS	26227988	26228075	.	+	1	Parent=Os04t0524300-01
Chr04	irgsp1_rep	three_prime_UTR	26228076	26228435	.	+	.	Parent=Os04t0524300-01
Chr04	irgsp1_rep	mRNA	26232855	26236777	.	+	.	ID=Os04t0524400-01;Name=Os04t0524400-01;Locus_id=Os04g0524400;Note=Similar to OSIGBa0153E02-OSIGBa0093I20.13 protein.;Transcript_evidence=AK103349 (DDBJ%2C Best hit);ORF_evidence=Q01HR2 (UniProt);InterPro=Protein of unknown function DUF3411 (IPR021825);NIAS_FLcDNA=J033126F21;TENOR=Os04t0524400-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	26232855	26232866	.	+	.	Parent=Os04t0524400-01
Chr04	irgsp1_rep	CDS	26232867	26233337	.	+	0	Parent=Os04t0524400-01
Chr04	irgsp1_rep	CDS	26233427	26233525	.	+	0	Parent=Os04t0524400-01
Chr04	irgsp1_rep	CDS	26233611	26233831	.	+	0	Parent=Os04t0524400-01
Chr04	irgsp1_rep	CDS	26234046	26234115	.	+	1	Parent=Os04t0524400-01
Chr04	irgsp1_rep	CDS	26234247	26234326	.	+	0	Parent=Os04t0524400-01
Chr04	irgsp1_rep	CDS	26234531	26234595	.	+	1	Parent=Os04t0524400-01
Chr04	irgsp1_rep	CDS	26234971	26235164	.	+	2	Parent=Os04t0524400-01
Chr04	irgsp1_rep	three_prime_UTR	26235165	26235166	.	+	.	Parent=Os04t0524400-01
Chr04	irgsp1_rep	three_prime_UTR	26235989	26236777	.	+	.	Parent=Os04t0524400-01
Chr04	irgsp1_rep	mRNA	26236705	26240648	.	-	.	ID=Os04t0524500-01;Name=Os04t0524500-01;Locus_id=Os04g0524500;CGSNL Gene Symbol=YSL13;CGSNL Gene Name=YELLOW STRIP-LIKE GENE 13;Oryzabase Gene Symbol Synonym(s)=OsYSL13%2C OsYs12;Oryzabase Gene Name Synonym(s)=rice YSL (yellow stripe-like) gene 13%2C Probable metal-nicotianamine transporter YSL13%2C Protein YELLOW STRIPE LIKE 13%2C yellow stripe 1-like transporter 13;Note=Oligopeptide transporter OPT superfamily protein.;Transcript_evidence=AK067235 (DDBJ%2C Best hit);ORF_evidence=Q01HR1 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085);InterPro=Oligopeptide transporter OPT superfamily (IPR004813);NIAS_FLcDNA=J013096O22;Oryzabase=8354;Expression=AK067235;TENOR=Os04t0524500-01;KEGG=Os04t0524500-01
Chr04	irgsp1_rep	CDS	26240591	26240648	.	-	0	Parent=Os04t0524500-01
Chr04	irgsp1_rep	CDS	26240115	26240246	.	-	2	Parent=Os04t0524500-01
Chr04	irgsp1_rep	CDS	26238819	26238982	.	-	2	Parent=Os04t0524500-01
Chr04	irgsp1_rep	CDS	26238629	26238726	.	-	0	Parent=Os04t0524500-01
Chr04	irgsp1_rep	CDS	26238383	26238517	.	-	1	Parent=Os04t0524500-01
Chr04	irgsp1_rep	CDS	26238087	26238276	.	-	1	Parent=Os04t0524500-01
Chr04	irgsp1_rep	CDS	26236903	26238015	.	-	0	Parent=Os04t0524500-01
Chr04	irgsp1_rep	three_prime_UTR	26236705	26236902	.	-	.	Parent=Os04t0524500-01
Chr04	irgsp1_rep	mRNA	26247730	26252252	.	+	.	ID=Os04t0524600-01;Name=Os04t0524600-01;Locus_id=Os04g0524600;CGSNL Gene Symbol=YSL12;CGSNL Gene Name=YELLOW STRIP-LIKE GENE 12;Oryzabase Gene Symbol Synonym(s)=OsYSL12%2C OsYs11;Oryzabase Gene Name Synonym(s)=rice YSL (yellow stripe-like) gene 12%2C Probable metal-nicotianamine transporter YSL12%2C Protein YELLOW STRIPE LIKE 12%2C yellow stripe 1-like transporter 12;Note=Oligopeptide transporter OPT superfamily protein.;Transcript_evidence=AK069437 (DDBJ%2C Best hit);ORF_evidence=Q01HR0 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085);InterPro=Oligopeptide transporter OPT superfamily (IPR004813);NIAS_FLcDNA=J023023O07;Oryzabase=8353;Expression=AK069437;TENOR=Os04t0524600-01;KEGG=Os04t0524600-01
Chr04	irgsp1_rep	five_prime_UTR	26247730	26247853	.	+	.	Parent=Os04t0524600-01
Chr04	irgsp1_rep	CDS	26247854	26247870	.	+	0	Parent=Os04t0524600-01
Chr04	irgsp1_rep	CDS	26248294	26248316	.	+	1	Parent=Os04t0524600-01
Chr04	irgsp1_rep	CDS	26249655	26249818	.	+	2	Parent=Os04t0524600-01
Chr04	irgsp1_rep	CDS	26249895	26249992	.	+	0	Parent=Os04t0524600-01
Chr04	irgsp1_rep	CDS	26250103	26250234	.	+	1	Parent=Os04t0524600-01
Chr04	irgsp1_rep	CDS	26250586	26250778	.	+	1	Parent=Os04t0524600-01
Chr04	irgsp1_rep	CDS	26250879	26251982	.	+	0	Parent=Os04t0524600-01
Chr04	irgsp1_rep	three_prime_UTR	26251983	26252252	.	+	.	Parent=Os04t0524600-01
Chr04	irgsp1_rep	mRNA	26250731	26252527	.	-	.	ID=Os04t0524700-01;Name=Os04t0524700-01;Locus_id=Os04g0524700;Note=Hypothetical protein.;Transcript_evidence=AK107449 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-128-C03;Expression=AK107449;TENOR=Os04t0524700-01;KEGG=Os04t0524700-01
Chr04	irgsp1_rep	five_prime_UTR	26251475	26252527	.	-	.	Parent=Os04t0524700-01
Chr04	irgsp1_rep	CDS	26251223	26251474	.	-	0	Parent=Os04t0524700-01
Chr04	irgsp1_rep	three_prime_UTR	26250731	26251222	.	-	.	Parent=Os04t0524700-01
Chr04	irgsp1_rep	mRNA	26253366	26255161	.	-	.	ID=Os04t0524800-01;Name=Os04t0524800-01;Locus_id=Os04g0524800;Note=Hypothetical protein.;Transcript_evidence=AK064753 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-120-F12;Expression=AK064753;TENOR=Os04t0524800-01;KEGG=Os04t0524800-01
Chr04	irgsp1_rep	five_prime_UTR	26254225	26255161	.	-	.	Parent=Os04t0524800-01
Chr04	irgsp1_rep	CDS	26253859	26254224	.	-	0	Parent=Os04t0524800-01
Chr04	irgsp1_rep	three_prime_UTR	26253366	26253858	.	-	.	Parent=Os04t0524800-01
Chr04	irgsp1_rep	mRNA	26253821	26256781	.	+	.	ID=Os04t0524900-00;Name=Os04t0524900-00;Locus_id=Os04g0524900;CGSNL Gene Symbol=YSL11;CGSNL Gene Name=YELLOW STRIP-LIKE GENE 11;Oryzabase Gene Symbol Synonym(s)=OsYSL11;Oryzabase Gene Name Synonym(s)=rice YSL (yellow stripe-like) gene 11%2C Probable metal-nicotianamine transporter YSL11%2C Protein YELLOW STRIPE LIKE 11%2C yellow stripe 1-like transporter 11;Note=Similar to OSIGBa0153E02-OSIGBa0093I20.16 protein.;Transcript_evidence=AB190921 (DDBJ%2C Best hit);ORF_evidence=Q01HQ9 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085);InterPro=Oligopeptide transporter OPT superfamily (IPR004813);Oryzabase=8352;TENOR=Os04t0524900-00;KEGG=Os04t0524900-00
Chr04	irgsp1_rep	CDS	26253821	26254265	.	+	0	Parent=Os04t0524900-00
Chr04	irgsp1_rep	CDS	26254737	26254900	.	+	2	Parent=Os04t0524900-00
Chr04	irgsp1_rep	CDS	26254990	26255087	.	+	0	Parent=Os04t0524900-00
Chr04	irgsp1_rep	CDS	26255178	26255312	.	+	1	Parent=Os04t0524900-00
Chr04	irgsp1_rep	CDS	26255400	26255589	.	+	1	Parent=Os04t0524900-00
Chr04	irgsp1_rep	CDS	26255675	26256781	.	+	0	Parent=Os04t0524900-00
Chr04	irgsp1_rep	mRNA	26257464	26257829	.	-	.	ID=Os04t0524950-00;Name=Os04t0524950-00;Locus_id=Os04g0524950;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os04t0524950-00
Chr04	irgsp1_rep	CDS	26257594	26257829	.	-	0	Parent=Os04t0524950-00
Chr04	irgsp1_rep	CDS	26257464	26257509	.	-	1	Parent=Os04t0524950-00
Chr04	irgsp1_rep	mRNA	26257984	26259784	.	-	.	ID=Os04t0525000-01;Name=Os04t0525000-01;Locus_id=Os04g0525000;Note=Protein of unknown function DUF177 domain containing protein.;Transcript_evidence=AK067753 (DDBJ%2C Best hit);ORF_evidence=Q01HQ8 (UniProt);InterPro=Protein of unknown function DUF177 (IPR003772);NIAS_FLcDNA=J013118G14;Expression=AK067753;TENOR=Os04t0525000-01;KEGG=Os04t0525000-01
Chr04	irgsp1_rep	five_prime_UTR	26259738	26259784	.	-	.	Parent=Os04t0525000-01
Chr04	irgsp1_rep	CDS	26259531	26259737	.	-	0	Parent=Os04t0525000-01
Chr04	irgsp1_rep	CDS	26259208	26259399	.	-	0	Parent=Os04t0525000-01
Chr04	irgsp1_rep	CDS	26259017	26259106	.	-	0	Parent=Os04t0525000-01
Chr04	irgsp1_rep	CDS	26258808	26258894	.	-	0	Parent=Os04t0525000-01
Chr04	irgsp1_rep	CDS	26258617	26258697	.	-	0	Parent=Os04t0525000-01
Chr04	irgsp1_rep	CDS	26258487	26258532	.	-	0	Parent=Os04t0525000-01
Chr04	irgsp1_rep	CDS	26258310	26258395	.	-	2	Parent=Os04t0525000-01
Chr04	irgsp1_rep	three_prime_UTR	26257984	26258309	.	-	.	Parent=Os04t0525000-01
Chr04	irgsp1_rep	mRNA	26260577	26262268	.	-	.	ID=Os04t0525100-01;Name=Os04t0525100-01;Locus_id=Os04g0525100;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK109806 (DDBJ%2C Best hit);ORF_evidence=Q01HQ7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=002-147-F12;Expression=AK109806;TENOR=Os04t0525100-01;KEGG=Os04t0525100-01
Chr04	irgsp1_rep	five_prime_UTR	26261735	26262268	.	-	.	Parent=Os04t0525100-01
Chr04	irgsp1_rep	CDS	26260664	26261734	.	-	0	Parent=Os04t0525100-01
Chr04	irgsp1_rep	three_prime_UTR	26260577	26260663	.	-	.	Parent=Os04t0525100-01
Chr04	irgsp1_rep	mRNA	26263793	26267430	.	-	.	ID=Os04t0525200-01;Name=Os04t0525200-01;Locus_id=Os04g0525200;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK121009 (DDBJ%2C Best hit);ORF_evidence=Q01HQ7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J023047B10;Expression=AK121009;TENOR=Os04t0525200-01;KEGG=Os04t0525200-01
Chr04	irgsp1_rep	five_prime_UTR	26267322	26267430	.	-	.	Parent=Os04t0525200-01
Chr04	irgsp1_rep	CDS	26266695	26267321	.	-	0	Parent=Os04t0525200-01
Chr04	irgsp1_rep	three_prime_UTR	26263793	26266694	.	-	.	Parent=Os04t0525200-01
Chr04	irgsp1_rep	mRNA	26284657	26285800	.	+	.	ID=Os04t0525600-01;Name=Os04t0525600-01;Locus_id=Os04g0525600;Oryzabase Gene Symbol Synonym(s)=OsClp7%2C CLP7;Oryzabase Gene Name Synonym(s)=Clp protease 7%2C CLP PROTEASE 7;Note=ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp).;Transcript_evidence=AK121934 (DDBJ%2C Best hit);ORF_evidence=Q01HQ5 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S14%2C ClpP (IPR001907),Peptidase S14%2C ClpP%2C active site (IPR018215),Peptidase S14/S49 (IPR023562);NIAS_FLcDNA=J033107A05;Oryzabase=20034;Expression=AK121934;TENOR=Os04t0525600-01;KEGG=Os04t0525600-01 (EC:3.4.21.92)
Chr04	irgsp1_rep	five_prime_UTR	26284657	26284727	.	+	.	Parent=Os04t0525600-01
Chr04	irgsp1_rep	CDS	26284728	26285657	.	+	0	Parent=Os04t0525600-01
Chr04	irgsp1_rep	three_prime_UTR	26285658	26285800	.	+	.	Parent=Os04t0525600-01
Chr04	irgsp1_rep	mRNA	26284864	26285877	.	+	.	ID=Os04t0525600-02;Name=Os04t0525600-02;Locus_id=Os04g0525600;Oryzabase Gene Symbol Synonym(s)=OsClp7%2C CLP7;Oryzabase Gene Name Synonym(s)=Clp protease 7%2C CLP PROTEASE 7;Note=Similar to ATP-dependent Clp protease proteolytic subunit.;Transcript_evidence=AK064073 (DDBJ%2C Best hit);ORF_evidence=Q01HQ5 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S14%2C ClpP (IPR001907),Peptidase S14%2C ClpP%2C active site (IPR018215),Peptidase S14/S49 (IPR023562);NIAS_FLcDNA=001-125-H01;Oryzabase=20034;Expression=AK064073;TENOR=Os04t0525600-02;KEGG=Os04t0525600-02 (EC:3.4.21.92)
Chr04	irgsp1_rep	five_prime_UTR	26284864	26284877	.	+	.	Parent=Os04t0525600-02
Chr04	irgsp1_rep	CDS	26284878	26285657	.	+	0	Parent=Os04t0525600-02
Chr04	irgsp1_rep	three_prime_UTR	26285658	26285877	.	+	.	Parent=Os04t0525600-02
Chr04	irgsp1_rep	mRNA	26287562	26292136	.	-	.	ID=Os04t0525700-01;Name=Os04t0525700-01;Locus_id=Os04g0525700;CGSNL Gene Symbol=SCP25;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 25;Oryzabase Gene Symbol Synonym(s)=OsSCP25;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 25;Note=Similar to Serine carboxypeptidase II precursor (EC 3.4.16.6) (Carboxypeptidase D) (Bri1 suppressor 1) [Contains: Serine carboxypeptidase II chain A%3B Serine carboxypeptidase II chain B].;Transcript_evidence=AK105830 (DDBJ%2C Best hit);ORF_evidence=Q01HQ4 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=001-203-E06;Oryzabase=19208;Expression=AK105830;TENOR=Os04t0525700-01;KEGG=Os04t0525700-01 (EC:3.4.16.6)
Chr04	irgsp1_rep	five_prime_UTR	26292135	26292136	.	-	.	Parent=Os04t0525700-01
Chr04	irgsp1_rep	CDS	26292104	26292134	.	-	0	Parent=Os04t0525700-01
Chr04	irgsp1_rep	CDS	26290309	26290416	.	-	2	Parent=Os04t0525700-01
Chr04	irgsp1_rep	CDS	26290024	26290212	.	-	2	Parent=Os04t0525700-01
Chr04	irgsp1_rep	CDS	26289742	26289830	.	-	2	Parent=Os04t0525700-01
Chr04	irgsp1_rep	CDS	26288952	26289278	.	-	0	Parent=Os04t0525700-01
Chr04	irgsp1_rep	CDS	26288708	26288853	.	-	0	Parent=Os04t0525700-01
Chr04	irgsp1_rep	CDS	26288163	26288255	.	-	1	Parent=Os04t0525700-01
Chr04	irgsp1_rep	CDS	26287757	26288066	.	-	1	Parent=Os04t0525700-01
Chr04	irgsp1_rep	three_prime_UTR	26287562	26287756	.	-	.	Parent=Os04t0525700-01
Chr04	irgsp1_rep	mRNA	26296166	26296783	.	-	.	ID=Os04t0525800-00;Name=Os04t0525800-00;Locus_id=Os04g0525800;Note=Similar to OSIGBa0115K01-H0319F09.1 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01HQ1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Isochorismatase-like (IPR000868);TENOR=Os04t0525800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	26296166	26296783	.	-	0	Parent=Os04t0525800-00
Chr04	irgsp1_rep	mRNA	26296174	26296843	.	+	.	ID=Os04t0525850-00;Name=Os04t0525850-00;Locus_id=Os04g0525850;Note=Conserved hypothetical protein.;Transcript_evidence=EU971861 (DDBJ);ORF_evidence=NP_001144947.1 (RefSeq);TENOR=Os04t0525850-00
Chr04	irgsp1_rep	five_prime_UTR	26296174	26296232	.	+	.	Parent=Os04t0525850-00
Chr04	irgsp1_rep	CDS	26296233	26296583	.	+	0	Parent=Os04t0525850-00
Chr04	irgsp1_rep	three_prime_UTR	26296584	26296843	.	+	.	Parent=Os04t0525850-00
Chr04	irgsp1_rep	mRNA	26300029	26307657	.	+	.	ID=Os04t0525900-01;Name=Os04t0525900-01;Locus_id=Os04g0525900;Note=Major facilitator superfamily protein.;Transcript_evidence=AK065806 (DDBJ%2C Best hit);ORF_evidence=Q01HQ2 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J013039J23;Expression=AK065806;TENOR=Os04t0525900-01;KEGG=Os04t0525900-01
Chr04	irgsp1_rep	five_prime_UTR	26300029	26300265	.	+	.	Parent=Os04t0525900-01
Chr04	irgsp1_rep	CDS	26300266	26300363	.	+	0	Parent=Os04t0525900-01
Chr04	irgsp1_rep	CDS	26301413	26301541	.	+	1	Parent=Os04t0525900-01
Chr04	irgsp1_rep	CDS	26301778	26301879	.	+	1	Parent=Os04t0525900-01
Chr04	irgsp1_rep	CDS	26302139	26302243	.	+	1	Parent=Os04t0525900-01
Chr04	irgsp1_rep	CDS	26302352	26302427	.	+	1	Parent=Os04t0525900-01
Chr04	irgsp1_rep	CDS	26302995	26303069	.	+	0	Parent=Os04t0525900-01
Chr04	irgsp1_rep	CDS	26303196	26303298	.	+	0	Parent=Os04t0525900-01
Chr04	irgsp1_rep	CDS	26303437	26303566	.	+	2	Parent=Os04t0525900-01
Chr04	irgsp1_rep	CDS	26303824	26303871	.	+	1	Parent=Os04t0525900-01
Chr04	irgsp1_rep	CDS	26304828	26304933	.	+	1	Parent=Os04t0525900-01
Chr04	irgsp1_rep	CDS	26305542	26305661	.	+	0	Parent=Os04t0525900-01
Chr04	irgsp1_rep	CDS	26306091	26306219	.	+	0	Parent=Os04t0525900-01
Chr04	irgsp1_rep	CDS	26306504	26306582	.	+	0	Parent=Os04t0525900-01
Chr04	irgsp1_rep	CDS	26307315	26307433	.	+	2	Parent=Os04t0525900-01
Chr04	irgsp1_rep	three_prime_UTR	26307434	26307657	.	+	.	Parent=Os04t0525900-01
Chr04	irgsp1_rep	mRNA	26310603	26311543	.	+	.	ID=Os04t0526000-01;Name=Os04t0526000-01;Locus_id=Os04g0526000;Oryzabase Gene Symbol Synonym(s)=OsTCP17%2C TCP17;Oryzabase Gene Name Synonym(s)=TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 17;Note=Similar to Auxin-induced basic helix-loop-helix transcription factor.;Transcript_evidence=AK064708 (DDBJ%2C Best hit);ORF_evidence=Q01HP9 (UniProt);InterPro=Transcription factor%2C TCP (IPR005333),Transcription factor TCP subgroup (IPR017887);NIAS_FLcDNA=002-118-B01;Oryzabase=12382;Expression=AK064708;TENOR=Os04t0526000-01;KEGG=Os04t0526000-01
Chr04	irgsp1_rep	five_prime_UTR	26310603	26310653	.	+	.	Parent=Os04t0526000-01
Chr04	irgsp1_rep	CDS	26310654	26311274	.	+	0	Parent=Os04t0526000-01
Chr04	irgsp1_rep	three_prime_UTR	26311275	26311543	.	+	.	Parent=Os04t0526000-01
Chr04	irgsp1_rep	mRNA	26312424	26312496	.	+	.	ID=Os04t0526101-00;Name=Os04t0526101-00;Locus_id=Os04g0526101;Note=Non-protein coding transcript.;Transcript_evidence=X02683 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0526101-00
Chr04	irgsp1_rep	exon	26312424	26312496	.	+	.	Parent=Os04t0526101-00
Chr04	irgsp1_rep	mRNA	26314027	26318498	.	+	.	ID=Os04t0526200-01;Name=Os04t0526200-01;Locus_id=Os04g0526200;Note=Hypothetical conserved gene.;Transcript_evidence=AK288801 (DDBJ%2C Best hit);ORF_evidence=Q7XKJ5 (UniProt);NIAS_FLcDNA=J090070N16;TENOR=Os04t0526200-01;KEGG=Os04t0526200-01
Chr04	irgsp1_rep	five_prime_UTR	26314027	26314288	.	+	.	Parent=Os04t0526200-01
Chr04	irgsp1_rep	five_prime_UTR	26315104	26316701	.	+	.	Parent=Os04t0526200-01
Chr04	irgsp1_rep	five_prime_UTR	26316831	26316897	.	+	.	Parent=Os04t0526200-01
Chr04	irgsp1_rep	five_prime_UTR	26317060	26317201	.	+	.	Parent=Os04t0526200-01
Chr04	irgsp1_rep	five_prime_UTR	26317539	26317636	.	+	.	Parent=Os04t0526200-01
Chr04	irgsp1_rep	CDS	26317637	26317652	.	+	0	Parent=Os04t0526200-01
Chr04	irgsp1_rep	CDS	26317743	26317864	.	+	2	Parent=Os04t0526200-01
Chr04	irgsp1_rep	CDS	26317935	26318156	.	+	0	Parent=Os04t0526200-01
Chr04	irgsp1_rep	three_prime_UTR	26318157	26318498	.	+	.	Parent=Os04t0526200-01
Chr04	irgsp1_rep	mRNA	26320449	26321489	.	+	.	ID=Os04t0526300-00;Name=Os04t0526300-00;Locus_id=Os04g0526300;Note=Sulfotransferase family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01HP8 (UniProt);GO=Molecular Function: sulfotransferase activity (GO:0008146);InterPro=Sulfotransferase domain (IPR000863);TENOR=Os04t0526300-00;KEGG=Os04t0526300-00
Chr04	irgsp1_rep	CDS	26320449	26321489	.	+	0	Parent=Os04t0526300-00
Chr04	irgsp1_rep	mRNA	26323989	26324804	.	-	.	ID=Os04t0526600-01;Name=Os04t0526600-01;Locus_id=Os04g0526600;Oryzabase Gene Symbol Synonym(s)=RASI%2C OsEnS-69;Oryzabase Gene Name Synonym(s)=rice alpha-amylase/subtilisin inhibitor%2C alpha-amylase/subtilisin inhibitor%2C endosperm-specific gene 69;Note=Similar to Alpha-amylase/subtilisin inhibitor (RASI).;Transcript_evidence=AK106723 (DDBJ%2C Best hit);ORF_evidence=Q01HP7 (UniProt);GO=Molecular Function: endopeptidase inhibitor activity (GO:0004866);InterPro=Proteinase inhibitor I3%2C Kunitz legume (IPR002160),Kunitz inhibitor ST1-like (IPR011065);NIAS_FLcDNA=002-114-G10;Oryzabase=14186;Expression=AK106723;TENOR=Os04t0526600-01;KEGG=Os04t0526600-01
Chr04	irgsp1_rep	five_prime_UTR	26324749	26324804	.	-	.	Parent=Os04t0526600-01
Chr04	irgsp1_rep	CDS	26324146	26324748	.	-	0	Parent=Os04t0526600-01
Chr04	irgsp1_rep	three_prime_UTR	26323989	26324145	.	-	.	Parent=Os04t0526600-01
Chr04	irgsp1_rep	mRNA	26342449	26343778	.	-	.	ID=Os04t0526800-01;Name=Os04t0526800-01;Locus_id=Os04g0526800;RAP-DB Gene Symbol Synonym(s)=OsABAR1;RAP-DB Gene Name Synonym(s)=ABA-responsive protein-like protein 1;Note=Glucosyltransferases-like GTPase activators and Myotubularin (GRAM) domain-containing protein%2C Drought and salt tolerance%2C Regulationof the ABA pathway;Transcript_evidence=AK061581;ORF_evidence=Q7XKJ1;InterPro=PH-like domain superfamily (IPR011993),GRAM domain (IPR004182);NIAS_FLcDNA=006-311-H09;Manual Curation=May 21%2C 2020;Literature_PMID=32416343;Expression=AK061581;TENOR=Os04t0526800-01;KEGG=Os04t0526800-01;Subcellular location=cytoplasm (GO:0005737), nucleus (GO:0005634)
Chr04	irgsp1_rep	five_prime_UTR	26343656	26343778	.	-	.	Parent=Os04t0526800-01
Chr04	irgsp1_rep	CDS	26343475	26343655	.	-	0	Parent=Os04t0526800-01
Chr04	irgsp1_rep	CDS	26343299	26343367	.	-	2	Parent=Os04t0526800-01
Chr04	irgsp1_rep	CDS	26342727	26343178	.	-	2	Parent=Os04t0526800-01
Chr04	irgsp1_rep	three_prime_UTR	26342449	26342726	.	-	.	Parent=Os04t0526800-01
Chr04	irgsp1_rep	mRNA	26347311	26348499	.	-	.	ID=Os04t0527000-01;Name=Os04t0527000-01;Locus_id=Os04g0527000;Note=GRAM domain containing protein.;Transcript_evidence=AK099545 (DDBJ%2C Best hit),AK070324 (DDBJ%2C Best hit),AK104433 (DDBJ%2C Best hit);ORF_evidence=Q01HP3 (UniProt);NIAS_FLcDNA=J013033A11,J023051E03,006-208-C06;TENOR=Os04t0527000-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	26348383	26348499	.	-	.	Parent=Os04t0527000-01
Chr04	irgsp1_rep	CDS	26348187	26348382	.	-	0	Parent=Os04t0527000-01
Chr04	irgsp1_rep	CDS	26347617	26348068	.	-	2	Parent=Os04t0527000-01
Chr04	irgsp1_rep	three_prime_UTR	26347311	26347616	.	-	.	Parent=Os04t0527000-01
Chr04	irgsp1_rep	mRNA	26360323	26361225	.	-	.	ID=Os04t0527300-01;Name=Os04t0527300-01;Locus_id=Os04g0527300;Note=Non-protein coding transcript.;Transcript_evidence=AK110653 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-169-E04;TENOR=Os04t0527300-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	exon	26360323	26361225	.	-	.	Parent=Os04t0527300-01
Chr04	irgsp1_rep	mRNA	26364147	26368293	.	+	.	ID=Os04t0527400-01;Name=Os04t0527400-01;Locus_id=Os04g0527400;Note=BRO1 domain containing protein.;Transcript_evidence=AK107295 (DDBJ%2C Best hit);ORF_evidence=Q01HP2 (UniProt);InterPro=BRO1 domain (IPR004328);NIAS_FLcDNA=002-126-C03;Expression=AK107295;TENOR=Os04t0527400-01;KEGG=Os04t0527400-01
Chr04	irgsp1_rep	five_prime_UTR	26364147	26364350	.	+	.	Parent=Os04t0527400-01
Chr04	irgsp1_rep	five_prime_UTR	26364540	26364844	.	+	.	Parent=Os04t0527400-01
Chr04	irgsp1_rep	five_prime_UTR	26365080	26365124	.	+	.	Parent=Os04t0527400-01
Chr04	irgsp1_rep	CDS	26365125	26365377	.	+	0	Parent=Os04t0527400-01
Chr04	irgsp1_rep	CDS	26365476	26365547	.	+	2	Parent=Os04t0527400-01
Chr04	irgsp1_rep	CDS	26365635	26365693	.	+	2	Parent=Os04t0527400-01
Chr04	irgsp1_rep	CDS	26365787	26365922	.	+	0	Parent=Os04t0527400-01
Chr04	irgsp1_rep	CDS	26366054	26366150	.	+	2	Parent=Os04t0527400-01
Chr04	irgsp1_rep	CDS	26366242	26366308	.	+	1	Parent=Os04t0527400-01
Chr04	irgsp1_rep	CDS	26366681	26366869	.	+	0	Parent=Os04t0527400-01
Chr04	irgsp1_rep	CDS	26366962	26367114	.	+	0	Parent=Os04t0527400-01
Chr04	irgsp1_rep	CDS	26367303	26367406	.	+	0	Parent=Os04t0527400-01
Chr04	irgsp1_rep	CDS	26367539	26367650	.	+	1	Parent=Os04t0527400-01
Chr04	irgsp1_rep	three_prime_UTR	26367651	26368293	.	+	.	Parent=Os04t0527400-01
Chr04	irgsp1_rep	mRNA	26364147	26367897	.	+	.	ID=Os04t0527400-02;Name=Os04t0527400-02;Locus_id=Os04g0527400;Note=BRO1 domain containing protein.;Transcript_evidence=AK064991 (DDBJ%2C Best hit);ORF_evidence=Q01HP2 (UniProt);InterPro=BRO1 domain (IPR004328);NIAS_FLcDNA=J013001D14;Expression=AK064991;TENOR=Os04t0527400-02;KEGG=Os04t0527400-02
Chr04	irgsp1_rep	five_prime_UTR	26364147	26364844	.	+	.	Parent=Os04t0527400-02
Chr04	irgsp1_rep	five_prime_UTR	26365080	26365124	.	+	.	Parent=Os04t0527400-02
Chr04	irgsp1_rep	CDS	26365125	26365377	.	+	0	Parent=Os04t0527400-02
Chr04	irgsp1_rep	CDS	26365476	26365547	.	+	2	Parent=Os04t0527400-02
Chr04	irgsp1_rep	CDS	26365635	26365693	.	+	2	Parent=Os04t0527400-02
Chr04	irgsp1_rep	CDS	26365787	26365922	.	+	0	Parent=Os04t0527400-02
Chr04	irgsp1_rep	CDS	26366054	26366150	.	+	2	Parent=Os04t0527400-02
Chr04	irgsp1_rep	CDS	26366242	26366308	.	+	1	Parent=Os04t0527400-02
Chr04	irgsp1_rep	CDS	26366681	26366869	.	+	0	Parent=Os04t0527400-02
Chr04	irgsp1_rep	CDS	26366962	26367114	.	+	0	Parent=Os04t0527400-02
Chr04	irgsp1_rep	CDS	26367303	26367406	.	+	0	Parent=Os04t0527400-02
Chr04	irgsp1_rep	CDS	26367539	26367650	.	+	1	Parent=Os04t0527400-02
Chr04	irgsp1_rep	three_prime_UTR	26367651	26367897	.	+	.	Parent=Os04t0527400-02
Chr04	irgsp1_rep	mRNA	26364700	26367885	.	+	.	ID=Os04t0527400-03;Name=Os04t0527400-03;Locus_id=Os04g0527400;Note=BRO1 domain containing protein.;Transcript_evidence=AK060860 (DDBJ%2C Best hit);ORF_evidence=Q01HP2 (UniProt);InterPro=BRO1 domain (IPR004328);NIAS_FLcDNA=001-034-F09;Expression=AK060860;TENOR=Os04t0527400-03;KEGG=Os04t0527400-03
Chr04	irgsp1_rep	five_prime_UTR	26364700	26364844	.	+	.	Parent=Os04t0527400-03
Chr04	irgsp1_rep	five_prime_UTR	26365080	26365124	.	+	.	Parent=Os04t0527400-03
Chr04	irgsp1_rep	CDS	26365125	26365377	.	+	0	Parent=Os04t0527400-03
Chr04	irgsp1_rep	CDS	26365476	26365547	.	+	2	Parent=Os04t0527400-03
Chr04	irgsp1_rep	CDS	26365635	26365693	.	+	2	Parent=Os04t0527400-03
Chr04	irgsp1_rep	CDS	26365787	26365922	.	+	0	Parent=Os04t0527400-03
Chr04	irgsp1_rep	CDS	26366054	26366150	.	+	2	Parent=Os04t0527400-03
Chr04	irgsp1_rep	CDS	26366242	26366308	.	+	1	Parent=Os04t0527400-03
Chr04	irgsp1_rep	CDS	26366681	26366869	.	+	0	Parent=Os04t0527400-03
Chr04	irgsp1_rep	CDS	26366962	26367114	.	+	0	Parent=Os04t0527400-03
Chr04	irgsp1_rep	CDS	26367303	26367406	.	+	0	Parent=Os04t0527400-03
Chr04	irgsp1_rep	CDS	26367539	26367650	.	+	1	Parent=Os04t0527400-03
Chr04	irgsp1_rep	three_prime_UTR	26367651	26367885	.	+	.	Parent=Os04t0527400-03
Chr04	irgsp1_rep	mRNA	26364785	26368378	.	+	.	ID=Os04t0527400-04;Name=Os04t0527400-04;Locus_id=Os04g0527400;Note=BRO1 domain containing protein.;Transcript_evidence=AK101489 (DDBJ%2C Best hit);ORF_evidence=Q01HP2 (UniProt);InterPro=BRO1 domain (IPR004328);NIAS_FLcDNA=J033042F15;Expression=AK101489;TENOR=Os04t0527400-04;KEGG=Os04t0527400-04
Chr04	irgsp1_rep	five_prime_UTR	26364785	26364844	.	+	.	Parent=Os04t0527400-04
Chr04	irgsp1_rep	five_prime_UTR	26365080	26365124	.	+	.	Parent=Os04t0527400-04
Chr04	irgsp1_rep	CDS	26365125	26365377	.	+	0	Parent=Os04t0527400-04
Chr04	irgsp1_rep	CDS	26365476	26365547	.	+	2	Parent=Os04t0527400-04
Chr04	irgsp1_rep	CDS	26365635	26365693	.	+	2	Parent=Os04t0527400-04
Chr04	irgsp1_rep	CDS	26365787	26365922	.	+	0	Parent=Os04t0527400-04
Chr04	irgsp1_rep	CDS	26366054	26366150	.	+	2	Parent=Os04t0527400-04
Chr04	irgsp1_rep	CDS	26366242	26366308	.	+	1	Parent=Os04t0527400-04
Chr04	irgsp1_rep	CDS	26366681	26366869	.	+	0	Parent=Os04t0527400-04
Chr04	irgsp1_rep	CDS	26366962	26367114	.	+	0	Parent=Os04t0527400-04
Chr04	irgsp1_rep	CDS	26367303	26367406	.	+	0	Parent=Os04t0527400-04
Chr04	irgsp1_rep	CDS	26367539	26367650	.	+	1	Parent=Os04t0527400-04
Chr04	irgsp1_rep	three_prime_UTR	26367651	26368378	.	+	.	Parent=Os04t0527400-04
Chr04	irgsp1_rep	mRNA	26369150	26369888	.	-	.	ID=Os04t0527500-01;Name=Os04t0527500-01;Locus_id=Os04g0527500;Note=Similar to OSIGBa0115K01-H0319F09.11 protein.;Transcript_evidence=AK059144 (DDBJ%2C Best hit);ORF_evidence=Q01HP1 (UniProt);InterPro=Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=001-023-A10;Expression=AK059144;TENOR=Os04t0527500-01;KEGG=Os04t0527500-01
Chr04	irgsp1_rep	five_prime_UTR	26369887	26369888	.	-	.	Parent=Os04t0527500-01
Chr04	irgsp1_rep	CDS	26369837	26369886	.	-	0	Parent=Os04t0527500-01
Chr04	irgsp1_rep	CDS	26369588	26369723	.	-	1	Parent=Os04t0527500-01
Chr04	irgsp1_rep	CDS	26369255	26369443	.	-	0	Parent=Os04t0527500-01
Chr04	irgsp1_rep	three_prime_UTR	26369150	26369254	.	-	.	Parent=Os04t0527500-01
Chr04	irgsp1_rep	mRNA	26372064	26375184	.	+	.	ID=Os04t0527700-01;Name=Os04t0527700-01;Locus_id=Os04g0527700;Note=CHCH domain containing protein.;Transcript_evidence=AK072980 (DDBJ%2C Best hit);ORF_evidence=Q01HP0 (UniProt);NIAS_FLcDNA=J023150D11;Expression=AK072980;TENOR=Os04t0527700-01;KEGG=Os04t0527700-01
Chr04	irgsp1_rep	five_prime_UTR	26372064	26372167	.	+	.	Parent=Os04t0527700-01
Chr04	irgsp1_rep	CDS	26372168	26372294	.	+	0	Parent=Os04t0527700-01
Chr04	irgsp1_rep	CDS	26373164	26373195	.	+	2	Parent=Os04t0527700-01
Chr04	irgsp1_rep	CDS	26373316	26373441	.	+	0	Parent=Os04t0527700-01
Chr04	irgsp1_rep	CDS	26374720	26374890	.	+	0	Parent=Os04t0527700-01
Chr04	irgsp1_rep	three_prime_UTR	26374891	26375184	.	+	.	Parent=Os04t0527700-01
Chr04	irgsp1_rep	mRNA	26375726	26379798	.	+	.	ID=Os04t0527800-01;Name=Os04t0527800-01;Locus_id=Os04g0527800;Note=Mitochondrial substrate carrier family protein.;Transcript_evidence=AK072311 (DDBJ%2C Best hit);ORF_evidence=Q01HN9 (UniProt);NIAS_FLcDNA=J023020O03;Expression=AK072311;TENOR=Os04t0527800-01;KEGG=Os04t0527800-01
Chr04	irgsp1_rep	five_prime_UTR	26375726	26375762	.	+	.	Parent=Os04t0527800-01
Chr04	irgsp1_rep	CDS	26375763	26376227	.	+	0	Parent=Os04t0527800-01
Chr04	irgsp1_rep	CDS	26376942	26377040	.	+	0	Parent=Os04t0527800-01
Chr04	irgsp1_rep	CDS	26377445	26377622	.	+	0	Parent=Os04t0527800-01
Chr04	irgsp1_rep	CDS	26378548	26378645	.	+	2	Parent=Os04t0527800-01
Chr04	irgsp1_rep	CDS	26379209	26379270	.	+	0	Parent=Os04t0527800-01
Chr04	irgsp1_rep	CDS	26379371	26379485	.	+	1	Parent=Os04t0527800-01
Chr04	irgsp1_rep	three_prime_UTR	26379486	26379798	.	+	.	Parent=Os04t0527800-01
Chr04	irgsp1_rep	mRNA	26379374	26379752	.	+	.	ID=Os04t0527800-02;Name=Os04t0527800-02;Locus_id=Os04g0527800;Note=Similar to OSIGBa0115K01-H0319F09.13 protein.;Transcript_evidence=AK104019 (DDBJ%2C Best hit);ORF_evidence=Q01HN9 (UniProt);NIAS_FLcDNA=001-008-C03;Expression=AK104019;TENOR=Os04t0527800-02;KEGG=Os04t0527800-02
Chr04	irgsp1_rep	five_prime_UTR	26379374	26379374	.	+	.	Parent=Os04t0527800-02
Chr04	irgsp1_rep	CDS	26379375	26379485	.	+	0	Parent=Os04t0527800-02
Chr04	irgsp1_rep	three_prime_UTR	26379486	26379752	.	+	.	Parent=Os04t0527800-02
Chr04	irgsp1_rep	mRNA	26380265	26381537	.	+	.	ID=Os04t0527900-01;Name=Os04t0527900-01;Locus_id=Os04g0527900;CGSNL Gene Symbol=TIP3%3B2;CGSNL Gene Name=TONOPLAST INTRINSIC PROTEIN 3%3B2;Oryzabase Gene Symbol Synonym(s)=OsTIP3%3B2%2C TIP3-2%2C OsEnS-70;Oryzabase Gene Name Synonym(s)=Probable aquaporin TIP3-2%2C Tonoplast intrinsic protein 3-2%2C endosperm-specific gene 70;Note=Similar to Tonoplast membrane integral protein ZmTIP3-2.;Transcript_evidence=AK108116 (DDBJ%2C Best hit);ORF_evidence=Q01HN8 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: water transport (GO:0006833),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Aquaporin (IPR012269),Major intrinsic protein%2C conserved site (IPR022357),Aquaporin-like (IPR023271);NIAS_FLcDNA=002-139-C05;Oryzabase=8383;Expression=AK108116;TENOR=Os04t0527900-01;KEGG=Os04t0527900-01
Chr04	irgsp1_rep	five_prime_UTR	26380265	26380330	.	+	.	Parent=Os04t0527900-01
Chr04	irgsp1_rep	CDS	26380331	26380487	.	+	0	Parent=Os04t0527900-01
Chr04	irgsp1_rep	CDS	26380588	26380835	.	+	2	Parent=Os04t0527900-01
Chr04	irgsp1_rep	CDS	26381097	26381489	.	+	0	Parent=Os04t0527900-01
Chr04	irgsp1_rep	three_prime_UTR	26381490	26381537	.	+	.	Parent=Os04t0527900-01
Chr04	irgsp1_rep	mRNA	26382004	26383647	.	-	.	ID=Os04t0528000-00;Name=Os04t0528000-00;Locus_id=Os04g0528000;Oryzabase Gene Symbol Synonym(s)=OsEnS-71;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 71;Note=Similar to OSIGBa0115K01-H0319F09.15 protein.;Transcript_evidence=BT018594 (DDBJ);ORF_evidence=Q01HN7 (UniProt);InterPro=Protein of unknown function DUF789 (IPR008507);Oryzabase=18391;TENOR=Os04t0528000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	26383400	26383647	.	-	.	Parent=Os04t0528000-00
Chr04	irgsp1_rep	CDS	26383397	26383399	.	-	0	Parent=Os04t0528000-00
Chr04	irgsp1_rep	CDS	26383154	26383267	.	-	0	Parent=Os04t0528000-00
Chr04	irgsp1_rep	CDS	26382850	26382935	.	-	0	Parent=Os04t0528000-00
Chr04	irgsp1_rep	CDS	26382560	26382631	.	-	1	Parent=Os04t0528000-00
Chr04	irgsp1_rep	CDS	26382243	26382267	.	-	1	Parent=Os04t0528000-00
Chr04	irgsp1_rep	three_prime_UTR	26382004	26382242	.	-	.	Parent=Os04t0528000-00
Chr04	irgsp1_rep	mRNA	26387566	26391159	.	+	.	ID=Os04t0528100-01;Name=Os04t0528100-01;Locus_id=Os04g0528100;Note=Similar to OSIGBa0115K01-H0319F09.16 protein.;Transcript_evidence=AK065957 (DDBJ%2C Best hit);ORF_evidence=Q01HN6 (UniProt);NIAS_FLcDNA=J013044D08;Expression=AK065957;TENOR=Os04t0528100-01;KEGG=Os04t0528100-01
Chr04	irgsp1_rep	five_prime_UTR	26387566	26387593	.	+	.	Parent=Os04t0528100-01
Chr04	irgsp1_rep	CDS	26387594	26387653	.	+	0	Parent=Os04t0528100-01
Chr04	irgsp1_rep	CDS	26387748	26387888	.	+	0	Parent=Os04t0528100-01
Chr04	irgsp1_rep	CDS	26388261	26388443	.	+	0	Parent=Os04t0528100-01
Chr04	irgsp1_rep	three_prime_UTR	26388444	26388444	.	+	.	Parent=Os04t0528100-01
Chr04	irgsp1_rep	three_prime_UTR	26390775	26391159	.	+	.	Parent=Os04t0528100-01
Chr04	irgsp1_rep	mRNA	26392328	26393064	.	+	.	ID=Os04t0528200-01;Name=Os04t0528200-01;Locus_id=Os04g0528200;Note=Similar to OSIGBa0115K01-H0319F09.17 protein.;Transcript_evidence=AK064693 (DDBJ%2C Best hit);ORF_evidence=Q01HN5 (UniProt);NIAS_FLcDNA=002-116-F03;Oryzabase=23050;Expression=AK064693;TENOR=Os04t0528200-01;KEGG=Os04t0528200-01
Chr04	irgsp1_rep	CDS	26392328	26392792	.	+	0	Parent=Os04t0528200-01
Chr04	irgsp1_rep	three_prime_UTR	26392793	26393064	.	+	.	Parent=Os04t0528200-01
Chr04	irgsp1_rep	mRNA	26395912	26401436	.	+	.	ID=Os04t0528300-01;Name=Os04t0528300-01;Locus_id=Os04g0528300;CGSNL Gene Symbol=ABCG9;CGSNL Gene Name=ABC TRANSPORTER G FAMILY MEMBER 9;Oryzabase Gene Symbol Synonym(s)=OsABCG9;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 9;Note=Similar to ABC transporter.;Transcript_evidence=AK064945 (DDBJ%2C Best hit);ORF_evidence=Q01HN4 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC-2 type transporter (IPR013525),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=J013000P15;Oryzabase=11986;Expression=AK064945;TENOR=Os04t0528300-01;KEGG=Os04t0528300-01
Chr04	irgsp1_rep	five_prime_UTR	26395912	26396037	.	+	.	Parent=Os04t0528300-01
Chr04	irgsp1_rep	CDS	26396038	26396472	.	+	0	Parent=Os04t0528300-01
Chr04	irgsp1_rep	CDS	26398156	26398445	.	+	0	Parent=Os04t0528300-01
Chr04	irgsp1_rep	CDS	26398543	26398714	.	+	1	Parent=Os04t0528300-01
Chr04	irgsp1_rep	CDS	26398829	26398951	.	+	0	Parent=Os04t0528300-01
Chr04	irgsp1_rep	CDS	26399057	26399185	.	+	0	Parent=Os04t0528300-01
Chr04	irgsp1_rep	CDS	26399343	26399537	.	+	0	Parent=Os04t0528300-01
Chr04	irgsp1_rep	CDS	26399686	26399772	.	+	0	Parent=Os04t0528300-01
Chr04	irgsp1_rep	CDS	26399854	26400126	.	+	0	Parent=Os04t0528300-01
Chr04	irgsp1_rep	CDS	26400724	26400831	.	+	0	Parent=Os04t0528300-01
Chr04	irgsp1_rep	CDS	26400921	26401244	.	+	0	Parent=Os04t0528300-01
Chr04	irgsp1_rep	three_prime_UTR	26401245	26401436	.	+	.	Parent=Os04t0528300-01
Chr04	irgsp1_rep	mRNA	26398213	26401369	.	+	.	ID=Os04t0528300-02;Name=Os04t0528300-02;Locus_id=Os04g0528300;CGSNL Gene Symbol=ABCG9;CGSNL Gene Name=ABC TRANSPORTER G FAMILY MEMBER 9;Oryzabase Gene Symbol Synonym(s)=OsABCG9;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 9;Note=Similar to OSIGBa0115K01-H0319F09.18 protein.;Transcript_evidence=AK070486 (DDBJ%2C Best hit);ORF_evidence=Q01HN4 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887);InterPro=ABC transporter-like (IPR003439),ABC-2 type transporter (IPR013525);NIAS_FLcDNA=J023048A10;Oryzabase=11986;Expression=AK070486;TENOR=Os04t0528300-02;KEGG=Os04t0528300-02
Chr04	irgsp1_rep	CDS	26398213	26398445	.	+	0	Parent=Os04t0528300-02
Chr04	irgsp1_rep	CDS	26398543	26398714	.	+	1	Parent=Os04t0528300-02
Chr04	irgsp1_rep	CDS	26398829	26398951	.	+	0	Parent=Os04t0528300-02
Chr04	irgsp1_rep	CDS	26399057	26399185	.	+	0	Parent=Os04t0528300-02
Chr04	irgsp1_rep	CDS	26399343	26399537	.	+	0	Parent=Os04t0528300-02
Chr04	irgsp1_rep	CDS	26399686	26399772	.	+	0	Parent=Os04t0528300-02
Chr04	irgsp1_rep	CDS	26399854	26400126	.	+	0	Parent=Os04t0528300-02
Chr04	irgsp1_rep	CDS	26400724	26400831	.	+	0	Parent=Os04t0528300-02
Chr04	irgsp1_rep	CDS	26400921	26401244	.	+	0	Parent=Os04t0528300-02
Chr04	irgsp1_rep	three_prime_UTR	26401245	26401369	.	+	.	Parent=Os04t0528300-02
Chr04	irgsp1_rep	mRNA	26398615	26401438	.	+	.	ID=Os04t0528300-03;Name=Os04t0528300-03;Locus_id=Os04g0528300;CGSNL Gene Symbol=ABCG9;CGSNL Gene Name=ABC TRANSPORTER G FAMILY MEMBER 9;Oryzabase Gene Symbol Synonym(s)=OsABCG9;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 9;Note=Similar to OSIGBa0115K01-H0319F09.18 protein.;Transcript_evidence=AK058387 (DDBJ%2C Best hit);ORF_evidence=Q01HN4 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=ABC-2 type transporter (IPR013525);NIAS_FLcDNA=001-015-A01;Oryzabase=11986;Expression=AK058387;TENOR=Os04t0528300-03;KEGG=Os04t0528300-03
Chr04	irgsp1_rep	five_prime_UTR	26398615	26398615	.	+	.	Parent=Os04t0528300-03
Chr04	irgsp1_rep	CDS	26398616	26398714	.	+	0	Parent=Os04t0528300-03
Chr04	irgsp1_rep	CDS	26398829	26398951	.	+	0	Parent=Os04t0528300-03
Chr04	irgsp1_rep	CDS	26399057	26399185	.	+	0	Parent=Os04t0528300-03
Chr04	irgsp1_rep	CDS	26399343	26399537	.	+	0	Parent=Os04t0528300-03
Chr04	irgsp1_rep	CDS	26399686	26399772	.	+	0	Parent=Os04t0528300-03
Chr04	irgsp1_rep	CDS	26399854	26400126	.	+	0	Parent=Os04t0528300-03
Chr04	irgsp1_rep	CDS	26400724	26400831	.	+	0	Parent=Os04t0528300-03
Chr04	irgsp1_rep	CDS	26400921	26401244	.	+	0	Parent=Os04t0528300-03
Chr04	irgsp1_rep	three_prime_UTR	26401245	26401438	.	+	.	Parent=Os04t0528300-03
Chr04	irgsp1_rep	mRNA	26399028	26404710	.	-	.	ID=Os04t0528400-01;Name=Os04t0528400-01;Locus_id=Os04g0528400;Oryzabase Gene Symbol Synonym(s)=OsHUS1%2C HUS1;Oryzabase Gene Name Synonym(s)=rice HUS1 homolog%2C Hydroxyurea sensitive 1;Note=Similar to ABC transporter.;Transcript_evidence=AK101159 (DDBJ%2C Best hit);ORF_evidence=Q01HN3 (UniProt);InterPro=Hus1-like protein (IPR007150);NIAS_FLcDNA=J033027K17;Oryzabase=18105;Expression=AK101159;TENOR=Os04t0528400-01;KEGG=Os04t0528400-01
Chr04	irgsp1_rep	five_prime_UTR	26404589	26404710	.	-	.	Parent=Os04t0528400-01
Chr04	irgsp1_rep	CDS	26404537	26404588	.	-	0	Parent=Os04t0528400-01
Chr04	irgsp1_rep	CDS	26403948	26404423	.	-	2	Parent=Os04t0528400-01
Chr04	irgsp1_rep	CDS	26403010	26403187	.	-	0	Parent=Os04t0528400-01
Chr04	irgsp1_rep	CDS	26402785	26402867	.	-	2	Parent=Os04t0528400-01
Chr04	irgsp1_rep	CDS	26402628	26402697	.	-	0	Parent=Os04t0528400-01
Chr04	irgsp1_rep	CDS	26402408	26402529	.	-	2	Parent=Os04t0528400-01
Chr04	irgsp1_rep	three_prime_UTR	26402393	26402407	.	-	.	Parent=Os04t0528400-01
Chr04	irgsp1_rep	three_prime_UTR	26399028	26399534	.	-	.	Parent=Os04t0528400-01
Chr04	irgsp1_rep	mRNA	26402240	26404710	.	-	.	ID=Os04t0528400-02;Name=Os04t0528400-02;Locus_id=Os04g0528400;RAP-DB Gene Symbol Synonym(s)=OsHUS1;RAP-DB Gene Name Synonym(s)=rice HUS1 homolog;Oryzabase Gene Symbol Synonym(s)=OsHUS1%2C HUS1;Oryzabase Gene Name Synonym(s)=rice HUS1 homolog%2C Hydroxyurea sensitive 1;Note=A member of the RAD9-RAD1-HUS1 complex%2C Regulation of ectopic interactions during meiosis;Transcript_evidence=AK064120;ORF_evidence=Q7XS44;GO=Biological Process: DNA damage checkpoint (GO:0000077),Biological Process: DNA repair (GO:0006281),Cellular Component: checkpoint clamp complex (GO:0030896);InterPro=Checkpoint protein Hus1/Mec3 (IPR007150);NIAS_FLcDNA=002-102-C01;Manual Curation=July 22%2C 2014;Literature_PMID=24901798;Oryzabase=18105;Expression=AK064120;TENOR=Os04t0528400-02;KEGG=Os04t0528400-02
Chr04	irgsp1_rep	five_prime_UTR	26404589	26404710	.	-	.	Parent=Os04t0528400-02
Chr04	irgsp1_rep	CDS	26404537	26404588	.	-	0	Parent=Os04t0528400-02
Chr04	irgsp1_rep	CDS	26403948	26404423	.	-	2	Parent=Os04t0528400-02
Chr04	irgsp1_rep	CDS	26403010	26403187	.	-	0	Parent=Os04t0528400-02
Chr04	irgsp1_rep	CDS	26402785	26402867	.	-	2	Parent=Os04t0528400-02
Chr04	irgsp1_rep	CDS	26402628	26402697	.	-	0	Parent=Os04t0528400-02
Chr04	irgsp1_rep	CDS	26402408	26402529	.	-	2	Parent=Os04t0528400-02
Chr04	irgsp1_rep	three_prime_UTR	26402240	26402407	.	-	.	Parent=Os04t0528400-02
Chr04	irgsp1_rep	mRNA	26398072	26403130	.	-	.	ID=Os04t0528400-03;Name=Os04t0528400-03;Locus_id=Os04g0528400;Oryzabase Gene Symbol Synonym(s)=OsHUS1%2C HUS1;Oryzabase Gene Name Synonym(s)=rice HUS1 homolog%2C Hydroxyurea sensitive 1;Note=Hypothetical gene.;Transcript_evidence=AK107445 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-128-B10;Oryzabase=18105;Expression=AK107445;TENOR=Os04t0528400-03;KEGG=Os04t0528400-03
Chr04	irgsp1_rep	five_prime_UTR	26403010	26403130	.	-	.	Parent=Os04t0528400-03
Chr04	irgsp1_rep	five_prime_UTR	26402785	26402867	.	-	.	Parent=Os04t0528400-03
Chr04	irgsp1_rep	five_prime_UTR	26402628	26402697	.	-	.	Parent=Os04t0528400-03
Chr04	irgsp1_rep	five_prime_UTR	26402393	26402529	.	-	.	Parent=Os04t0528400-03
Chr04	irgsp1_rep	five_prime_UTR	26398710	26399534	.	-	.	Parent=Os04t0528400-03
Chr04	irgsp1_rep	CDS	26398152	26398709	.	-	0	Parent=Os04t0528400-03
Chr04	irgsp1_rep	three_prime_UTR	26398072	26398151	.	-	.	Parent=Os04t0528400-03
Chr04	irgsp1_rep	mRNA	26421615	26423910	.	-	.	ID=Os04t0528600-01;Name=Os04t0528600-01;Locus_id=Os04g0528600;Note=Similar to OSIGBa0115K01-H0319F09.22 protein.;Transcript_evidence=AK240918 (DDBJ%2C Best hit);ORF_evidence=Q01HN0 (UniProt);NIAS_FLcDNA=J065037M09;TENOR=Os04t0528600-01;KEGG=Os04t0528600-01
Chr04	irgsp1_rep	five_prime_UTR	26423827	26423910	.	-	.	Parent=Os04t0528600-01
Chr04	irgsp1_rep	CDS	26422801	26423826	.	-	0	Parent=Os04t0528600-01
Chr04	irgsp1_rep	CDS	26421767	26422705	.	-	0	Parent=Os04t0528600-01
Chr04	irgsp1_rep	three_prime_UTR	26421615	26421766	.	-	.	Parent=Os04t0528600-01
Chr04	irgsp1_rep	mRNA	26421620	26423838	.	+	.	ID=Os04t0528651-00;Name=Os04t0528651-00;Locus_id=Os04g0528651;Note=Hypothetical protein.;Transcript_evidence=tplb0055d11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0528651-00
Chr04	irgsp1_rep	five_prime_UTR	26421620	26421838	.	+	.	Parent=Os04t0528651-00
Chr04	irgsp1_rep	CDS	26421839	26422582	.	+	0	Parent=Os04t0528651-00
Chr04	irgsp1_rep	three_prime_UTR	26422583	26423838	.	+	.	Parent=Os04t0528651-00
Chr04	irgsp1_rep	mRNA	26431398	26432248	.	-	.	ID=Os04t0528800-01;Name=Os04t0528800-01;Locus_id=Os04g0528800;Note=Similar to Ferredoxin-thioredoxin reductase%2C variable chain (FTR-V) (Ferredoxin- thioredoxin reductase subunit A) (FTR-A).;Transcript_evidence=AK103671 (DDBJ%2C Best hit);ORF_evidence=Q01HM9 (UniProt);GO=Biological Process: lipoate biosynthetic process (GO:0009107),Biological Process: photosynthesis (GO:0015979),Cellular Component: plastid (GO:0009536),Molecular Function: ferredoxin-NAD(P) reductase activity (GO:0008937),Molecular Function: lipoate synthase activity (GO:0016992),Molecular Function: 4 iron%2C 4 sulfur cluster binding (GO:0051539);InterPro=Lipoate synthase (IPR003698),Ferredoxin thioredoxin reductase%2C alpha chain (IPR004207),Electron transport accessory protein-like domain (IPR008990);NIAS_FLcDNA=J033135O21;Expression=AK103671;TENOR=Os04t0528800-01;KEGG=Os04t0528800-01
Chr04	irgsp1_rep	five_prime_UTR	26432136	26432248	.	-	.	Parent=Os04t0528800-01
Chr04	irgsp1_rep	CDS	26431641	26432135	.	-	0	Parent=Os04t0528800-01
Chr04	irgsp1_rep	three_prime_UTR	26431398	26431640	.	-	.	Parent=Os04t0528800-01
Chr04	irgsp1_rep	mRNA	26431391	26432133	.	-	.	ID=Os04t0528800-02;Name=Os04t0528800-02;Locus_id=Os04g0528800;Note=Similar to OSIGBa0115K01-H0319F09.23 protein.;Transcript_evidence=AK062397 (DDBJ%2C Best hit);ORF_evidence=Q01HM9 (UniProt);GO=Biological Process: lipoate biosynthetic process (GO:0009107),Biological Process: photosynthesis (GO:0015979),Cellular Component: plastid (GO:0009536),Molecular Function: ferredoxin-NAD(P) reductase activity (GO:0008937),Molecular Function: lipoate synthase activity (GO:0016992),Molecular Function: 4 iron%2C 4 sulfur cluster binding (GO:0051539);InterPro=Lipoate synthase (IPR003698),Ferredoxin thioredoxin reductase%2C alpha chain (IPR004207),Electron transport accessory protein-like domain (IPR008990);NIAS_FLcDNA=001-102-D09;Expression=AK062397;TENOR=Os04t0528800-02;KEGG=Os04t0528800-02
Chr04	irgsp1_rep	five_prime_UTR	26432103	26432133	.	-	.	Parent=Os04t0528800-02
Chr04	irgsp1_rep	CDS	26431641	26432102	.	-	0	Parent=Os04t0528800-02
Chr04	irgsp1_rep	three_prime_UTR	26431391	26431640	.	-	.	Parent=Os04t0528800-02
Chr04	irgsp1_rep	mRNA	26438670	26440540	.	-	.	ID=Os04t0529100-01;Name=Os04t0529100-01;Locus_id=Os04g0529100;CGSNL Gene Symbol=ERF45;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 45;Oryzabase Gene Symbol Synonym(s)=OsERF#045%2C OsERF045%2C OsERF45%2C AP2/EREBP#119%2C AP2/EREBP119;Oryzabase Gene Name Synonym(s)=ethylene response factor 45%2C APETALA2/ethylene-responsive element binding protein 119;Note=Pathogenesis-related transcriptional factor and ERF domain containing protein.;Transcript_evidence=AK107680 (DDBJ%2C Best hit);ORF_evidence=Q01HM7 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=002-132-A07;Oryzabase=10562;Expression=AK107680;TENOR=Os04t0529100-01;KEGG=Os04t0529100-01
Chr04	irgsp1_rep	five_prime_UTR	26440446	26440540	.	-	.	Parent=Os04t0529100-01
Chr04	irgsp1_rep	CDS	26440434	26440445	.	-	0	Parent=Os04t0529100-01
Chr04	irgsp1_rep	CDS	26439045	26440166	.	-	0	Parent=Os04t0529100-01
Chr04	irgsp1_rep	three_prime_UTR	26438670	26439044	.	-	.	Parent=Os04t0529100-01
Chr04	irgsp1_rep	mRNA	26467924	26468565	.	+	.	ID=Os04t0529300-01;Name=Os04t0529300-01;Locus_id=Os04g0529300;Note=Hypothetical conserved gene.;Transcript_evidence=AK288129 (DDBJ%2C Best hit);ORF_evidence=B8ASC6 (UniProt);NIAS_FLcDNA=J080093P22;TENOR=Os04t0529300-01;KEGG=Os04t0529300-01
Chr04	irgsp1_rep	five_prime_UTR	26467924	26467945	.	+	.	Parent=Os04t0529300-01
Chr04	irgsp1_rep	CDS	26467946	26468242	.	+	0	Parent=Os04t0529300-01
Chr04	irgsp1_rep	three_prime_UTR	26468243	26468565	.	+	.	Parent=Os04t0529300-01
Chr04	irgsp1_rep	mRNA	26475471	26480129	.	+	.	ID=Os04t0529400-01;Name=Os04t0529400-01;Locus_id=Os04g0529400;Oryzabase Gene Symbol Synonym(s)=OsWD40-104;Note=Similar to OO_Ba0013J05-OO_Ba0033A15.30 protein.;Transcript_evidence=AK099627 (DDBJ%2C Best hit);ORF_evidence=D0ABH3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J013055M04;Oryzabase=10785;TENOR=Os04t0529400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	26475471	26475793	.	+	.	Parent=Os04t0529400-01
Chr04	irgsp1_rep	CDS	26475794	26477065	.	+	0	Parent=Os04t0529400-01
Chr04	irgsp1_rep	CDS	26478993	26478995	.	+	0	Parent=Os04t0529400-01
Chr04	irgsp1_rep	three_prime_UTR	26478996	26479150	.	+	.	Parent=Os04t0529400-01
Chr04	irgsp1_rep	three_prime_UTR	26479235	26479286	.	+	.	Parent=Os04t0529400-01
Chr04	irgsp1_rep	three_prime_UTR	26479392	26479474	.	+	.	Parent=Os04t0529400-01
Chr04	irgsp1_rep	three_prime_UTR	26479559	26480129	.	+	.	Parent=Os04t0529400-01
Chr04	irgsp1_rep	mRNA	26484115	26494579	.	+	.	ID=Os04t0529500-01;Name=Os04t0529500-01;Locus_id=Os04g0529500;CGSNL Gene Symbol=-;CGSNL Gene Name=-;Oryzabase Gene Symbol Synonym(s)=OsCPL1%2C CPL1;Oryzabase Gene Name Synonym(s)=C-TERMINAL DOMAIN  PHOSPHATASE-LIKE 1;Note=Similar to C-terminal domain phosphatase-like 1.;Transcript_evidence=AK072878 (DDBJ%2C Best hit);ORF_evidence=Q00RJ7 (UniProt);NIAS_FLcDNA=J023144D20;Oryzabase=10449;Expression=AK072878;TENOR=Os04t0529500-01;KEGG=Os04t0529500-01
Chr04	irgsp1_rep	CDS	26484115	26484366	.	+	0	Parent=Os04t0529500-01
Chr04	irgsp1_rep	CDS	26485414	26485509	.	+	0	Parent=Os04t0529500-01
Chr04	irgsp1_rep	CDS	26485625	26485654	.	+	0	Parent=Os04t0529500-01
Chr04	irgsp1_rep	three_prime_UTR	26485655	26485890	.	+	.	Parent=Os04t0529500-01
Chr04	irgsp1_rep	three_prime_UTR	26486382	26486592	.	+	.	Parent=Os04t0529500-01
Chr04	irgsp1_rep	three_prime_UTR	26486784	26486941	.	+	.	Parent=Os04t0529500-01
Chr04	irgsp1_rep	three_prime_UTR	26487026	26487096	.	+	.	Parent=Os04t0529500-01
Chr04	irgsp1_rep	three_prime_UTR	26487272	26487377	.	+	.	Parent=Os04t0529500-01
Chr04	irgsp1_rep	three_prime_UTR	26487445	26487531	.	+	.	Parent=Os04t0529500-01
Chr04	irgsp1_rep	three_prime_UTR	26488156	26488713	.	+	.	Parent=Os04t0529500-01
Chr04	irgsp1_rep	three_prime_UTR	26488810	26488873	.	+	.	Parent=Os04t0529500-01
Chr04	irgsp1_rep	three_prime_UTR	26489917	26490050	.	+	.	Parent=Os04t0529500-01
Chr04	irgsp1_rep	three_prime_UTR	26490133	26490186	.	+	.	Parent=Os04t0529500-01
Chr04	irgsp1_rep	three_prime_UTR	26490886	26490982	.	+	.	Parent=Os04t0529500-01
Chr04	irgsp1_rep	three_prime_UTR	26492185	26492390	.	+	.	Parent=Os04t0529500-01
Chr04	irgsp1_rep	three_prime_UTR	26492466	26492549	.	+	.	Parent=Os04t0529500-01
Chr04	irgsp1_rep	three_prime_UTR	26492830	26492895	.	+	.	Parent=Os04t0529500-01
Chr04	irgsp1_rep	three_prime_UTR	26493448	26493521	.	+	.	Parent=Os04t0529500-01
Chr04	irgsp1_rep	three_prime_UTR	26493618	26494579	.	+	.	Parent=Os04t0529500-01
Chr04	irgsp1_rep	mRNA	26484115	26494089	.	+	.	ID=Os04t0529500-02;Name=Os04t0529500-02;Locus_id=Os04g0529500;CGSNL Gene Symbol=-;CGSNL Gene Name=-;Oryzabase Gene Symbol Synonym(s)=OsCPL1%2C CPL1;Oryzabase Gene Name Synonym(s)=C-TERMINAL DOMAIN  PHOSPHATASE-LIKE 1;Note=Similar to OSIGBa0155K17.3 protein.;Transcript_evidence=AK069574 (DDBJ%2C Best hit);ORF_evidence=Q00RJ7 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: double-stranded RNA binding (GO:0003725),Molecular Function: protein binding (GO:0005515);InterPro=Double-stranded RNA-binding (IPR001159),NLI interacting factor (IPR004274),HAD-like domain (IPR023214);NIAS_FLcDNA=J023022A09;Oryzabase=10449;TENOR=Os04t0529500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	26484115	26484366	.	+	0	Parent=Os04t0529500-02
Chr04	irgsp1_rep	CDS	26485414	26485890	.	+	0	Parent=Os04t0529500-02
Chr04	irgsp1_rep	CDS	26486382	26486592	.	+	0	Parent=Os04t0529500-02
Chr04	irgsp1_rep	CDS	26486784	26486941	.	+	2	Parent=Os04t0529500-02
Chr04	irgsp1_rep	CDS	26487026	26487096	.	+	0	Parent=Os04t0529500-02
Chr04	irgsp1_rep	CDS	26487272	26487377	.	+	1	Parent=Os04t0529500-02
Chr04	irgsp1_rep	CDS	26487445	26487531	.	+	0	Parent=Os04t0529500-02
Chr04	irgsp1_rep	CDS	26488156	26488713	.	+	0	Parent=Os04t0529500-02
Chr04	irgsp1_rep	CDS	26488810	26488873	.	+	0	Parent=Os04t0529500-02
Chr04	irgsp1_rep	CDS	26489917	26490050	.	+	2	Parent=Os04t0529500-02
Chr04	irgsp1_rep	CDS	26490133	26490186	.	+	0	Parent=Os04t0529500-02
Chr04	irgsp1_rep	CDS	26490886	26490982	.	+	0	Parent=Os04t0529500-02
Chr04	irgsp1_rep	CDS	26492185	26492390	.	+	2	Parent=Os04t0529500-02
Chr04	irgsp1_rep	CDS	26492466	26492549	.	+	0	Parent=Os04t0529500-02
Chr04	irgsp1_rep	CDS	26492830	26492895	.	+	0	Parent=Os04t0529500-02
Chr04	irgsp1_rep	CDS	26493448	26493521	.	+	0	Parent=Os04t0529500-02
Chr04	irgsp1_rep	CDS	26493618	26493720	.	+	1	Parent=Os04t0529500-02
Chr04	irgsp1_rep	three_prime_UTR	26493721	26494089	.	+	.	Parent=Os04t0529500-02
Chr04	irgsp1_rep	mRNA	26492225	26494581	.	+	.	ID=Os04t0529500-03;Name=Os04t0529500-03;Locus_id=Os04g0529500;CGSNL Gene Symbol=-;CGSNL Gene Name=-;Oryzabase Gene Symbol Synonym(s)=OsCPL1%2C CPL1;Oryzabase Gene Name Synonym(s)=C-TERMINAL DOMAIN  PHOSPHATASE-LIKE 1;Note=Similar to cDNA clone:J023022A09%2C full insert sequence.;Transcript_evidence=AK059419 (DDBJ%2C Best hit);ORF_evidence=B7EGJ9 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: RNA binding (GO:0003723),Molecular Function: double-stranded RNA binding (GO:0003725);InterPro=Double-stranded RNA-binding (IPR001159),Double-stranded RNA-binding-like (IPR014720);NIAS_FLcDNA=001-027-D10;Oryzabase=10449;Expression=AK059419;TENOR=Os04t0529500-03;KEGG=Os04t0529500-03
Chr04	irgsp1_rep	five_prime_UTR	26492225	26492225	.	+	.	Parent=Os04t0529500-03
Chr04	irgsp1_rep	CDS	26492226	26492390	.	+	0	Parent=Os04t0529500-03
Chr04	irgsp1_rep	CDS	26492466	26492549	.	+	0	Parent=Os04t0529500-03
Chr04	irgsp1_rep	CDS	26492830	26492895	.	+	0	Parent=Os04t0529500-03
Chr04	irgsp1_rep	CDS	26493448	26493521	.	+	0	Parent=Os04t0529500-03
Chr04	irgsp1_rep	CDS	26493618	26493720	.	+	1	Parent=Os04t0529500-03
Chr04	irgsp1_rep	three_prime_UTR	26493721	26494581	.	+	.	Parent=Os04t0529500-03
Chr04	irgsp1_rep	mRNA	26498847	26503177	.	+	.	ID=Os04t0529600-01;Name=Os04t0529600-01;Locus_id=Os04g0529600;Note=Lanthionine synthetase C-like family protein.;Transcript_evidence=AK288141 (DDBJ%2C Best hit);ORF_evidence=Q00RJ6 (UniProt);InterPro=Lanthionine synthetase C-like (IPR007822),LanC-like protein%2C eukaryotic (IPR020464);NIAS_FLcDNA=J080309N12;TENOR=Os04t0529600-01;KEGG=Os04t0529600-01
Chr04	irgsp1_rep	five_prime_UTR	26498847	26498954	.	+	.	Parent=Os04t0529600-01
Chr04	irgsp1_rep	CDS	26498955	26499143	.	+	0	Parent=Os04t0529600-01
Chr04	irgsp1_rep	CDS	26499231	26499430	.	+	0	Parent=Os04t0529600-01
Chr04	irgsp1_rep	CDS	26499534	26499645	.	+	1	Parent=Os04t0529600-01
Chr04	irgsp1_rep	CDS	26502082	26502198	.	+	0	Parent=Os04t0529600-01
Chr04	irgsp1_rep	CDS	26502317	26502628	.	+	0	Parent=Os04t0529600-01
Chr04	irgsp1_rep	CDS	26502737	26503075	.	+	0	Parent=Os04t0529600-01
Chr04	irgsp1_rep	three_prime_UTR	26503076	26503177	.	+	.	Parent=Os04t0529600-01
Chr04	irgsp1_rep	mRNA	26504423	26506105	.	+	.	ID=Os04t0529700-01;Name=Os04t0529700-01;Locus_id=Os04g0529700;Note=Glycosyltransferase sugar-binding region containing DXD motif domain containing protein.;Transcript_evidence=AK121532 (DDBJ%2C Best hit);ORF_evidence=Q00RJ5 (UniProt);GO=Cellular Component: Golgi stack (GO:0005795),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Glycosyltransferase%2C DXD sugar-binding motif (IPR007577),Alpha 1%2C4-glycosyltransferase domain (IPR007652);NIAS_FLcDNA=J033030P20;Oryzabase=15256;Expression=AK121532;TENOR=Os04t0529700-01;KEGG=Os04t0529700-01
Chr04	irgsp1_rep	five_prime_UTR	26504423	26504481	.	+	.	Parent=Os04t0529700-01
Chr04	irgsp1_rep	CDS	26504482	26505876	.	+	0	Parent=Os04t0529700-01
Chr04	irgsp1_rep	three_prime_UTR	26505877	26506105	.	+	.	Parent=Os04t0529700-01
Chr04	irgsp1_rep	mRNA	26506073	26508797	.	-	.	ID=Os04t0529800-01;Name=Os04t0529800-01;Locus_id=Os04g0529800;Note=Sugar/inositol transporter domain containing protein.;Transcript_evidence=AK069679 (DDBJ%2C Best hit);ORF_evidence=Q00RJ4 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J023028O21;Expression=AK069679;TENOR=Os04t0529800-01;KEGG=Os04t0529800-01
Chr04	irgsp1_rep	five_prime_UTR	26508649	26508797	.	-	.	Parent=Os04t0529800-01
Chr04	irgsp1_rep	CDS	26508480	26508648	.	-	0	Parent=Os04t0529800-01
Chr04	irgsp1_rep	CDS	26506601	26508003	.	-	2	Parent=Os04t0529800-01
Chr04	irgsp1_rep	three_prime_UTR	26506073	26506600	.	-	.	Parent=Os04t0529800-01
Chr04	irgsp1_rep	mRNA	26506261	26507840	.	-	.	ID=Os04t0529800-02;Name=Os04t0529800-02;Locus_id=Os04g0529800;Note=Similar to OSIGBa0155K17.6 protein.;Transcript_evidence=AK101735 (DDBJ%2C Best hit);ORF_evidence=Q00RJ4 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J033061I08;Expression=AK101735;TENOR=Os04t0529800-02;KEGG=Os04t0529800-02
Chr04	irgsp1_rep	five_prime_UTR	26507840	26507840	.	-	.	Parent=Os04t0529800-02
Chr04	irgsp1_rep	CDS	26506601	26507839	.	-	0	Parent=Os04t0529800-02
Chr04	irgsp1_rep	three_prime_UTR	26506261	26506600	.	-	.	Parent=Os04t0529800-02
Chr04	irgsp1_rep	mRNA	26511352	26515329	.	-	.	ID=Os04t0530000-01;Name=Os04t0530000-01;Locus_id=Os04g0530000;Note=Similar to OSIGBa0155K17.8 protein.;Transcript_evidence=AK066169 (DDBJ%2C Best hit);ORF_evidence=Q00RJ2 (UniProt);InterPro=Transcription factor TFIIIC%2C tau55-related (IPR019481);NIAS_FLcDNA=J013052P20;Expression=AK066169;TENOR=Os04t0530000-01;KEGG=Os04t0530000-01
Chr04	irgsp1_rep	five_prime_UTR	26515069	26515329	.	-	.	Parent=Os04t0530000-01
Chr04	irgsp1_rep	five_prime_UTR	26514741	26514806	.	-	.	Parent=Os04t0530000-01
Chr04	irgsp1_rep	CDS	26514606	26514740	.	-	0	Parent=Os04t0530000-01
Chr04	irgsp1_rep	CDS	26513697	26513747	.	-	0	Parent=Os04t0530000-01
Chr04	irgsp1_rep	CDS	26512156	26512207	.	-	0	Parent=Os04t0530000-01
Chr04	irgsp1_rep	CDS	26511554	26511750	.	-	2	Parent=Os04t0530000-01
Chr04	irgsp1_rep	three_prime_UTR	26511352	26511553	.	-	.	Parent=Os04t0530000-01
Chr04	irgsp1_rep	mRNA	26517160	26517496	.	+	.	ID=Os04t0530050-00;Name=Os04t0530050-00;Locus_id=Os04g0530050;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os04t0530050-00
Chr04	irgsp1_rep	CDS	26517160	26517214	.	+	0	Parent=Os04t0530050-00
Chr04	irgsp1_rep	CDS	26517321	26517496	.	+	2	Parent=Os04t0530050-00
Chr04	irgsp1_rep	mRNA	26518761	26522048	.	+	.	ID=Os04t0530100-01;Name=Os04t0530100-01;Locus_id=Os04g0530100;CGSNL Gene Symbol=EXPB17;CGSNL Gene Name=BETA-EXPANSIN 17;Oryzabase Gene Symbol Synonym(s)=OsEXPB17;Note=Similar to Beta-expansin 1 precursor (AtEXPB1) (At-EXPB1) (Ath-ExpBeta-1.5).;Transcript_evidence=AK107184 (DDBJ%2C Best hit);ORF_evidence=Q7X6J9 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Expansin/pollen allergen%2C DPBB domain (IPR007112),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);NIAS_FLcDNA=002-124-H07;Oryzabase=12398;Expression=AK107184;TENOR=Os04t0530100-01;KEGG=Os04t0530100-01
Chr04	irgsp1_rep	five_prime_UTR	26518761	26518803	.	+	.	Parent=Os04t0530100-01
Chr04	irgsp1_rep	CDS	26518804	26519246	.	+	0	Parent=Os04t0530100-01
Chr04	irgsp1_rep	CDS	26519775	26519920	.	+	1	Parent=Os04t0530100-01
Chr04	irgsp1_rep	CDS	26521267	26521649	.	+	2	Parent=Os04t0530100-01
Chr04	irgsp1_rep	three_prime_UTR	26521650	26522048	.	+	.	Parent=Os04t0530100-01
Chr04	irgsp1_rep	mRNA	26520000	26521605	.	-	.	ID=Os04t0530150-01;Name=Os04t0530150-01;Locus_id=Os04g0530150;Note=Non-protein coding transcript.;Transcript_evidence=AK109871 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-149-A11;TENOR=Os04t0530150-01
Chr04	irgsp1_rep	exon	26520000	26521605	.	-	.	Parent=Os04t0530150-01
Chr04	irgsp1_rep	mRNA	26522892	26523482	.	+	.	ID=Os04t0530200-01;Name=Os04t0530200-01;Locus_id=Os04g0530200;Note=Similar to OSIGBa0155K17.10 protein.;Transcript_evidence=AK105586 (DDBJ%2C Best hit),AK121439 (DDBJ%2C Best hit);ORF_evidence=Q00RJ0 (UniProt);NIAS_FLcDNA=001-129-A02,J023140K14;TENOR=Os04t0530200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	26522892	26522975	.	+	.	Parent=Os04t0530200-01
Chr04	irgsp1_rep	CDS	26522976	26523113	.	+	0	Parent=Os04t0530200-01
Chr04	irgsp1_rep	three_prime_UTR	26523114	26523482	.	+	.	Parent=Os04t0530200-01
Chr04	irgsp1_rep	mRNA	26524261	26528367	.	-	.	ID=Os04t0530300-01;Name=Os04t0530300-01;Locus_id=Os04g0530300;Note=Similar to OSIGBa0155K17.11 protein.;Transcript_evidence=AK066705 (DDBJ%2C Best hit);ORF_evidence=Q00RI9 (UniProt);NIAS_FLcDNA=J013075F19;Expression=AK066705;TENOR=Os04t0530300-01;KEGG=Os04t0530300-01
Chr04	irgsp1_rep	five_prime_UTR	26528285	26528367	.	-	.	Parent=Os04t0530300-01
Chr04	irgsp1_rep	CDS	26527665	26528284	.	-	0	Parent=Os04t0530300-01
Chr04	irgsp1_rep	CDS	26526918	26526963	.	-	1	Parent=Os04t0530300-01
Chr04	irgsp1_rep	CDS	26526387	26526436	.	-	0	Parent=Os04t0530300-01
Chr04	irgsp1_rep	CDS	26526226	26526267	.	-	1	Parent=Os04t0530300-01
Chr04	irgsp1_rep	CDS	26526005	26526118	.	-	1	Parent=Os04t0530300-01
Chr04	irgsp1_rep	CDS	26525580	26525658	.	-	1	Parent=Os04t0530300-01
Chr04	irgsp1_rep	CDS	26524575	26524646	.	-	0	Parent=Os04t0530300-01
Chr04	irgsp1_rep	CDS	26524428	26524478	.	-	0	Parent=Os04t0530300-01
Chr04	irgsp1_rep	three_prime_UTR	26524261	26524427	.	-	.	Parent=Os04t0530300-01
Chr04	irgsp1_rep	mRNA	26528506	26531632	.	+	.	ID=Os04t0530400-01;Name=Os04t0530400-01;Locus_id=Os04g0530400;Note=t-snare domain containing protein.;Transcript_evidence=AK067634 (DDBJ%2C Best hit);ORF_evidence=B6TDT7 (UniProt);InterPro=SNARE-complex protein Syntaxin-18 N-terminal (IPR019529);NIAS_FLcDNA=J013108A04;Expression=AK067634;TENOR=Os04t0530400-01;KEGG=Os04t0530400-01
Chr04	irgsp1_rep	five_prime_UTR	26528506	26528717	.	+	.	Parent=Os04t0530400-01
Chr04	irgsp1_rep	CDS	26528718	26528795	.	+	0	Parent=Os04t0530400-01
Chr04	irgsp1_rep	CDS	26528901	26528984	.	+	0	Parent=Os04t0530400-01
Chr04	irgsp1_rep	CDS	26529070	26529174	.	+	0	Parent=Os04t0530400-01
Chr04	irgsp1_rep	CDS	26529590	26529736	.	+	0	Parent=Os04t0530400-01
Chr04	irgsp1_rep	CDS	26530494	26530751	.	+	0	Parent=Os04t0530400-01
Chr04	irgsp1_rep	CDS	26530841	26530972	.	+	0	Parent=Os04t0530400-01
Chr04	irgsp1_rep	CDS	26531399	26531545	.	+	0	Parent=Os04t0530400-01
Chr04	irgsp1_rep	three_prime_UTR	26531546	26531632	.	+	.	Parent=Os04t0530400-01
Chr04	irgsp1_rep	mRNA	26532649	26535961	.	-	.	ID=Os04t0530500-01;Name=Os04t0530500-01;Locus_id=Os04g0530500;RAP-DB Gene Symbol Synonym(s)=OsRDCP1;RAP-DB Gene Name Synonym(s)=RING domain-containing protein 1;CGSNL Gene Symbol=RDCP1;CGSNL Gene Name=RING DOMAIN-CONTAINING PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsRDCP1;Oryzabase Gene Name Synonym(s)=RING domain-containing protein 1%2C RING domain containing protein 1;Note=RING domain-containing E3 ubiquitin ligase%2C Tolerance to drought stress;Transcript_evidence=AK070732;ORF_evidence=Q7X7L7;GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841),Zinc finger%2C C3HC4 RING-type (IPR018957),Zinc finger%2C RING-type%2C conserved site (IPR017907);NIAS_FLcDNA=J023063I18;Manual Curation=July 27%2C 2020;Literature_PMID=21497713;Oryzabase=9449;TENOR=Os04t0530500-01
Chr04	irgsp1_rep	five_prime_UTR	26535727	26535961	.	-	.	Parent=Os04t0530500-01
Chr04	irgsp1_rep	five_prime_UTR	26533601	26533632	.	-	.	Parent=Os04t0530500-01
Chr04	irgsp1_rep	CDS	26532839	26533600	.	-	0	Parent=Os04t0530500-01
Chr04	irgsp1_rep	three_prime_UTR	26532649	26532838	.	-	.	Parent=Os04t0530500-01
Chr04	irgsp1_rep	mRNA	26532655	26535901	.	-	.	ID=Os04t0530500-02;Name=Os04t0530500-02;Locus_id=Os04g0530500;CGSNL Gene Symbol=RDCP1;CGSNL Gene Name=RING DOMAIN-CONTAINING PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsRDCP1;Oryzabase Gene Name Synonym(s)=RING domain-containing protein 1%2C RING domain containing protein 1;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK104359 (DDBJ%2C Best hit);ORF_evidence=NP_001152715.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=001-035-B09;Oryzabase=9449;TENOR=Os04t0530500-02
Chr04	irgsp1_rep	five_prime_UTR	26535727	26535901	.	-	.	Parent=Os04t0530500-02
Chr04	irgsp1_rep	five_prime_UTR	26533601	26533632	.	-	.	Parent=Os04t0530500-02
Chr04	irgsp1_rep	CDS	26532839	26533600	.	-	0	Parent=Os04t0530500-02
Chr04	irgsp1_rep	three_prime_UTR	26532655	26532838	.	-	.	Parent=Os04t0530500-02
Chr04	irgsp1_rep	mRNA	26540478	26542966	.	-	.	ID=Os04t0530600-01;Name=Os04t0530600-01;Locus_id=Os04g0530600;CGSNL Gene Symbol=TRXM2;CGSNL Gene Name=THIOREDOXIN M-TYPE 2;Oryzabase Gene Symbol Synonym(s)=OsTRX m2%2C TRX m2%2C OsTRXM2;Oryzabase Gene Name Synonym(s)=thioredoxin M2;Note=Similar to Thioredoxin 1 (TRX-1) (Thioredoxin M).;Transcript_evidence=AK069195 (DDBJ%2C Best hit);ORF_evidence=NP_001150752.1 (RefSeq);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Thioredoxin (IPR005746),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766),Thioredoxin%2C conserved site (IPR017937);NIAS_FLcDNA=J023007G07;Oryzabase=9707;Expression=AK069195;TENOR=Os04t0530600-01;KEGG=Os04t0530600-01
Chr04	irgsp1_rep	five_prime_UTR	26542868	26542966	.	-	.	Parent=Os04t0530600-01
Chr04	irgsp1_rep	CDS	26542645	26542867	.	-	0	Parent=Os04t0530600-01
Chr04	irgsp1_rep	CDS	26540791	26541110	.	-	2	Parent=Os04t0530600-01
Chr04	irgsp1_rep	three_prime_UTR	26540478	26540790	.	-	.	Parent=Os04t0530600-01
Chr04	irgsp1_rep	mRNA	26543241	26546917	.	-	.	ID=Os04t0530700-01;Name=Os04t0530700-01;Locus_id=Os04g0530700;Note=Similar to Beta-D-xylosidase.;Transcript_evidence=AK120331 (DDBJ%2C Best hit);ORF_evidence=NP_196618.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 3%2C N-terminal (IPR001764),Glycoside hydrolase%2C family 3%2C C-terminal (IPR002772),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J013058N01;Expression=AK120331;TENOR=Os04t0530700-01;KEGG=Os04t0530700-01
Chr04	irgsp1_rep	five_prime_UTR	26546884	26546917	.	-	.	Parent=Os04t0530700-01
Chr04	irgsp1_rep	CDS	26546203	26546883	.	-	0	Parent=Os04t0530700-01
Chr04	irgsp1_rep	CDS	26545440	26545606	.	-	0	Parent=Os04t0530700-01
Chr04	irgsp1_rep	CDS	26545216	26545313	.	-	1	Parent=Os04t0530700-01
Chr04	irgsp1_rep	CDS	26544609	26544959	.	-	2	Parent=Os04t0530700-01
Chr04	irgsp1_rep	CDS	26544112	26544528	.	-	2	Parent=Os04t0530700-01
Chr04	irgsp1_rep	CDS	26543419	26544017	.	-	2	Parent=Os04t0530700-01
Chr04	irgsp1_rep	three_prime_UTR	26543241	26543418	.	-	.	Parent=Os04t0530700-01
Chr04	irgsp1_rep	mRNA	26550416	26554234	.	-	.	ID=Os04t0530801-00;Name=Os04t0530801-00;Locus_id=Os04g0530801;Note=Hypothetical gene.;Transcript_evidence=EU973535 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0530801-00;KEGG=Os04t0530801-00
Chr04	irgsp1_rep	five_prime_UTR	26554234	26554234	.	-	.	Parent=Os04t0530801-00
Chr04	irgsp1_rep	CDS	26553357	26554233	.	-	0	Parent=Os04t0530801-00
Chr04	irgsp1_rep	CDS	26550638	26550726	.	-	2	Parent=Os04t0530801-00
Chr04	irgsp1_rep	three_prime_UTR	26550416	26550637	.	-	.	Parent=Os04t0530801-00
Chr04	irgsp1_rep	mRNA	26553080	26554649	.	+	.	ID=Os04t0530900-01;Name=Os04t0530900-01;Locus_id=Os04g0530900;RAP-DB Gene Symbol Synonym(s)=OsGATL5;RAP-DB Gene Name Synonym(s)=galacturonosyltransferase-like 5;CGSNL Gene Symbol=GATL5;CGSNL Gene Name=GALACTURONOSYLTRANSFERASE-LIKE 5;Oryzabase Gene Symbol Synonym(s)=OsGATL5;Oryzabase Gene Name Synonym(s)=galacturonosyltransferase-like 5;Note=Galacturonosyltransferase-like protein%2C Glycosyltransferase family 8 (GT8) protein%2C Salt and cold stress response;Transcript_evidence=AK072297;ORF_evidence=Q7X734;GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Nucleotide-diphospho-sugar transferases (IPR029044),Glycosyl transferase%2C family 8 (IPR002495);NIAS_FLcDNA=J023018D17;Manual Curation=March 12%2C 2020;Literature_PMID=31096659;Oryzabase=23247;Expression=AK072297;TENOR=Os04t0530900-01;KEGG=Os04t0530900-01
Chr04	irgsp1_rep	five_prime_UTR	26553080	26553231	.	+	.	Parent=Os04t0530900-01
Chr04	irgsp1_rep	CDS	26553232	26554257	.	+	0	Parent=Os04t0530900-01
Chr04	irgsp1_rep	three_prime_UTR	26554258	26554649	.	+	.	Parent=Os04t0530900-01
Chr04	irgsp1_rep	mRNA	26553125	26554821	.	+	.	ID=Os04t0530900-02;Name=Os04t0530900-02;Locus_id=Os04g0530900;CGSNL Gene Symbol=GATL5;CGSNL Gene Name=GALACTURONOSYLTRANSFERASE-LIKE 5;Oryzabase Gene Symbol Synonym(s)=OsGATL5;Oryzabase Gene Name Synonym(s)=galacturonosyltransferase-like 5;Note=Glycosyl transferase%2C family 8 protein.;Transcript_evidence=AK120509 (DDBJ%2C Best hit);ORF_evidence=XP_002312381.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 8 (IPR002495);NIAS_FLcDNA=J013123H17;Oryzabase=23247;Expression=AK120509;TENOR=Os04t0530900-02;KEGG=Os04t0530900-02
Chr04	irgsp1_rep	five_prime_UTR	26553125	26553231	.	+	.	Parent=Os04t0530900-02
Chr04	irgsp1_rep	CDS	26553232	26554257	.	+	0	Parent=Os04t0530900-02
Chr04	irgsp1_rep	three_prime_UTR	26554258	26554821	.	+	.	Parent=Os04t0530900-02
Chr04	irgsp1_rep	mRNA	26558962	26561236	.	+	.	ID=Os04t0531100-01;Name=Os04t0531100-01;Locus_id=Os04g0531100;RAP-DB Gene Symbol Synonym(s)=OsERG3%2C RPP16;RAP-DB Gene Name Synonym(s)=Elicitor-responsive protein 3%2C PHLOEM PROTEIN 16;CGSNL Gene Symbol=RPP16;CGSNL Gene Name=PHLOEM PROTEIN 16;Oryzabase Gene Symbol Synonym(s)=Rpp16(t)%2C ERG3%2C OsERG3;Oryzabase Gene Name Synonym(s)=Elicitor-responsive protein 3%2C 16 kDa phloem protein;Note=Small C2-domain protein consisting of a single C2 domain%2C Phloem protein%2C Signaling pathway involving Ca<sup>2+</sup> ions%2C Defense response;Transcript_evidence=AK063584,AF090698 (Milyang 117);ORF_evidence=Q0JBH9;InterPro=C2 domain (IPR000008);NIAS_FLcDNA=001-118-A01;Manual Curation=May 31%2C 2017;Literature_PMID=21756975;Oryzabase=2206;Expression=AK063584;TENOR=Os04t0531100-01;KEGG=Os04t0531100-01;Subcellular location=cytosol (GO:0005829)
Chr04	irgsp1_rep	five_prime_UTR	26558962	26559051	.	+	.	Parent=Os04t0531100-01
Chr04	irgsp1_rep	CDS	26559052	26559118	.	+	0	Parent=Os04t0531100-01
Chr04	irgsp1_rep	CDS	26559297	26559362	.	+	2	Parent=Os04t0531100-01
Chr04	irgsp1_rep	CDS	26560005	26560131	.	+	2	Parent=Os04t0531100-01
Chr04	irgsp1_rep	CDS	26560426	26560540	.	+	1	Parent=Os04t0531100-01
Chr04	irgsp1_rep	CDS	26560942	26561001	.	+	0	Parent=Os04t0531100-01
Chr04	irgsp1_rep	three_prime_UTR	26561002	26561236	.	+	.	Parent=Os04t0531100-01
Chr04	irgsp1_rep	mRNA	26563253	26563549	.	-	.	ID=Os04t0531200-00;Name=Os04t0531200-00;Locus_id=Os04g0531200;Note=Hypothetical conserved gene.;Transcript_evidence=AB332066 (DDBJ%2C Best hit);ORF_evidence=A2XVT7 (UniProt);TENOR=Os04t0531200-00;KEGG=Os04t0531200-00
Chr04	irgsp1_rep	CDS	26563253	26563549	.	-	0	Parent=Os04t0531200-00
Chr04	irgsp1_rep	mRNA	26565544	26571227	.	+	.	ID=Os04t0531300-01;Name=Os04t0531300-01;Locus_id=Os04g0531300;Note=tRNA-dihydrouridine synthase domain containing protein.;Transcript_evidence=AK103911 (DDBJ%2C Best hit);ORF_evidence=Q00RI1 (UniProt);GO=Biological Process: tRNA processing (GO:0008033),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: tRNA dihydrouridine synthase activity (GO:0017150),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=tRNA-dihydrouridine synthase (IPR001269),Aldolase-type TIM barrel (IPR013785),tRNA-dihydrouridine synthase%2C conserved site (IPR018517);NIAS_FLcDNA=J033150P13;Expression=AK103911;TENOR=Os04t0531300-01;KEGG=Os04t0531300-01 (EC:1.-.-.-)
Chr04	irgsp1_rep	five_prime_UTR	26565544	26565668	.	+	.	Parent=Os04t0531300-01
Chr04	irgsp1_rep	CDS	26565669	26565713	.	+	0	Parent=Os04t0531300-01
Chr04	irgsp1_rep	CDS	26566506	26566611	.	+	0	Parent=Os04t0531300-01
Chr04	irgsp1_rep	CDS	26567030	26567168	.	+	2	Parent=Os04t0531300-01
Chr04	irgsp1_rep	CDS	26567402	26567510	.	+	1	Parent=Os04t0531300-01
Chr04	irgsp1_rep	CDS	26567595	26567731	.	+	0	Parent=Os04t0531300-01
Chr04	irgsp1_rep	CDS	26568175	26568311	.	+	1	Parent=Os04t0531300-01
Chr04	irgsp1_rep	CDS	26568749	26568855	.	+	2	Parent=Os04t0531300-01
Chr04	irgsp1_rep	CDS	26569048	26569175	.	+	0	Parent=Os04t0531300-01
Chr04	irgsp1_rep	CDS	26569983	26570034	.	+	1	Parent=Os04t0531300-01
Chr04	irgsp1_rep	three_prime_UTR	26570035	26570069	.	+	.	Parent=Os04t0531300-01
Chr04	irgsp1_rep	three_prime_UTR	26570756	26571227	.	+	.	Parent=Os04t0531300-01
Chr04	irgsp1_rep	mRNA	26565601	26571685	.	+	.	ID=Os04t0531300-02;Name=Os04t0531300-02;Locus_id=Os04g0531300;Note=tRNA-dihydrouridine synthase domain containing protein.;Transcript_evidence=AK072647 (DDBJ%2C Best hit);ORF_evidence=Q00RI1 (UniProt);GO=Biological Process: tRNA processing (GO:0008033),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: tRNA dihydrouridine synthase activity (GO:0017150),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=tRNA-dihydrouridine synthase (IPR001269),Aldolase-type TIM barrel (IPR013785),tRNA-dihydrouridine synthase%2C conserved site (IPR018517);NIAS_FLcDNA=J023130D01;Expression=AK072647;TENOR=Os04t0531300-02;KEGG=Os04t0531300-02 (EC:1.-.-.-)
Chr04	irgsp1_rep	five_prime_UTR	26565601	26565668	.	+	.	Parent=Os04t0531300-02
Chr04	irgsp1_rep	CDS	26565669	26565713	.	+	0	Parent=Os04t0531300-02
Chr04	irgsp1_rep	CDS	26566506	26566611	.	+	0	Parent=Os04t0531300-02
Chr04	irgsp1_rep	CDS	26567030	26567168	.	+	2	Parent=Os04t0531300-02
Chr04	irgsp1_rep	CDS	26567402	26567510	.	+	1	Parent=Os04t0531300-02
Chr04	irgsp1_rep	CDS	26567595	26567731	.	+	0	Parent=Os04t0531300-02
Chr04	irgsp1_rep	CDS	26568175	26568311	.	+	1	Parent=Os04t0531300-02
Chr04	irgsp1_rep	CDS	26568749	26568855	.	+	2	Parent=Os04t0531300-02
Chr04	irgsp1_rep	CDS	26569048	26569175	.	+	0	Parent=Os04t0531300-02
Chr04	irgsp1_rep	CDS	26569983	26570034	.	+	1	Parent=Os04t0531300-02
Chr04	irgsp1_rep	three_prime_UTR	26570035	26570069	.	+	.	Parent=Os04t0531300-02
Chr04	irgsp1_rep	three_prime_UTR	26570756	26570939	.	+	.	Parent=Os04t0531300-02
Chr04	irgsp1_rep	three_prime_UTR	26571401	26571685	.	+	.	Parent=Os04t0531300-02
Chr04	irgsp1_rep	mRNA	26572754	26575020	.	-	.	ID=Os04t0531400-01;Name=Os04t0531400-01;Locus_id=Os04g0531400;Oryzabase Gene Symbol Synonym(s)=SIT2;Oryzabase Gene Name Synonym(s)=Salt Intolerance 2;Note=Similar to Lectin-like receptor kinase 7%3B2.;Transcript_evidence=AK105289 (DDBJ%2C Best hit);ORF_evidence=Q00RI0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-116-F02;Oryzabase=18336;Expression=AK105289;TENOR=Os04t0531400-01;KEGG=Os04t0531400-01
Chr04	irgsp1_rep	five_prime_UTR	26574950	26575020	.	-	.	Parent=Os04t0531400-01
Chr04	irgsp1_rep	CDS	26574667	26574949	.	-	0	Parent=Os04t0531400-01
Chr04	irgsp1_rep	CDS	26572928	26574555	.	-	2	Parent=Os04t0531400-01
Chr04	irgsp1_rep	three_prime_UTR	26572754	26572927	.	-	.	Parent=Os04t0531400-01
Chr04	irgsp1_rep	mRNA	26576255	26578707	.	+	.	ID=Os04t0531500-01;Name=Os04t0531500-01;Locus_id=Os04g0531500;Note=Concanavalin A-like lectin/glucanase domain containing protein.;Transcript_evidence=AK102285 (DDBJ%2C Best hit);ORF_evidence=Q00RH9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033089I06;Expression=AK102285;TENOR=Os04t0531500-01;KEGG=Os04t0531500-01
Chr04	irgsp1_rep	five_prime_UTR	26576255	26576297	.	+	.	Parent=Os04t0531500-01
Chr04	irgsp1_rep	CDS	26576298	26578508	.	+	0	Parent=Os04t0531500-01
Chr04	irgsp1_rep	three_prime_UTR	26578509	26578707	.	+	.	Parent=Os04t0531500-01
Chr04	irgsp1_rep	mRNA	26576334	26578699	.	-	.	ID=Os04t0531600-01;Name=Os04t0531600-01;Locus_id=Os04g0531600;Note=Hypothetical protein.;Transcript_evidence=AK107678 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-132-A04;Expression=AK107678;TENOR=Os04t0531600-01;KEGG=Os04t0531600-01
Chr04	irgsp1_rep	five_prime_UTR	26576975	26578699	.	-	.	Parent=Os04t0531600-01
Chr04	irgsp1_rep	CDS	26576561	26576974	.	-	0	Parent=Os04t0531600-01
Chr04	irgsp1_rep	three_prime_UTR	26576334	26576560	.	-	.	Parent=Os04t0531600-01
Chr04	irgsp1_rep	mRNA	26580262	26582931	.	+	.	ID=Os04t0531700-01;Name=Os04t0531700-01;Locus_id=Os04g0531700;Note=Short-chain dehydrogenase/reductase SDR domain containing protein.;Transcript_evidence=AK119481 (DDBJ%2C Best hit);ORF_evidence=Q00RH9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-134-C01;Expression=AK119481;TENOR=Os04t0531700-01;KEGG=Os04t0531700-01 (EC:1.1.1.184)
Chr04	irgsp1_rep	five_prime_UTR	26580262	26580457	.	+	.	Parent=Os04t0531700-01
Chr04	irgsp1_rep	CDS	26580458	26580787	.	+	0	Parent=Os04t0531700-01
Chr04	irgsp1_rep	three_prime_UTR	26580788	26581394	.	+	.	Parent=Os04t0531700-01
Chr04	irgsp1_rep	three_prime_UTR	26581759	26581953	.	+	.	Parent=Os04t0531700-01
Chr04	irgsp1_rep	three_prime_UTR	26582395	26582931	.	+	.	Parent=Os04t0531700-01
Chr04	irgsp1_rep	mRNA	26583060	26584951	.	+	.	ID=Os04t0531750-00;Name=Os04t0531750-00;Locus_id=Os04g0531750;Note=Similar to OSIGBa0125M19.13 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q00RH3 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);TENOR=Os04t0531750-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	26583060	26583160	.	+	0	Parent=Os04t0531750-00
Chr04	irgsp1_rep	CDS	26583703	26583946	.	+	1	Parent=Os04t0531750-00
Chr04	irgsp1_rep	CDS	26584031	26584093	.	+	0	Parent=Os04t0531750-00
Chr04	irgsp1_rep	CDS	26584258	26584455	.	+	0	Parent=Os04t0531750-00
Chr04	irgsp1_rep	CDS	26584562	26584951	.	+	0	Parent=Os04t0531750-00
Chr04	irgsp1_rep	mRNA	26585732	26588913	.	+	.	ID=Os04t0531800-01;Name=Os04t0531800-01;Locus_id=Os04g0531800;Note=Conserved hypothetical protein.;Transcript_evidence=AK121355 (DDBJ%2C Best hit);ORF_evidence=B8ASD8 (UniProt);NIAS_FLcDNA=J023122K04;Expression=AK121355;TENOR=Os04t0531800-01;KEGG=Os04t0531800-01
Chr04	irgsp1_rep	five_prime_UTR	26585732	26585984	.	+	.	Parent=Os04t0531800-01
Chr04	irgsp1_rep	CDS	26585985	26586293	.	+	0	Parent=Os04t0531800-01
Chr04	irgsp1_rep	three_prime_UTR	26586294	26588913	.	+	.	Parent=Os04t0531800-01
Chr04	irgsp1_rep	mRNA	26590627	26592402	.	-	.	ID=Os04t0531900-01;Name=Os04t0531900-01;Locus_id=Os04g0531900;Note=Short-chain dehydrogenase/reductase SDR domain containing protein.;Transcript_evidence=AK071069 (DDBJ%2C Best hit);ORF_evidence=Q00RH3 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023081M12;Expression=AK071069;TENOR=Os04t0531900-01;KEGG=Os04t0531900-01
Chr04	irgsp1_rep	five_prime_UTR	26592307	26592402	.	-	.	Parent=Os04t0531900-01
Chr04	irgsp1_rep	CDS	26592272	26592306	.	-	0	Parent=Os04t0531900-01
Chr04	irgsp1_rep	CDS	26591913	26592157	.	-	1	Parent=Os04t0531900-01
Chr04	irgsp1_rep	CDS	26591752	26591813	.	-	2	Parent=Os04t0531900-01
Chr04	irgsp1_rep	CDS	26591399	26591596	.	-	0	Parent=Os04t0531900-01
Chr04	irgsp1_rep	CDS	26590910	26591293	.	-	0	Parent=Os04t0531900-01
Chr04	irgsp1_rep	three_prime_UTR	26590627	26590909	.	-	.	Parent=Os04t0531900-01
Chr04	irgsp1_rep	mRNA	26611746	26613837	.	-	.	ID=Os04t0532100-01;Name=Os04t0532100-01;Locus_id=Os04g0532100;Note=Short-chain dehydrogenase/reductase SDR domain containing protein.;Transcript_evidence=AK109281 (DDBJ%2C Best hit);ORF_evidence=Q00RH5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=002-188-B09;Expression=AK109281;TENOR=Os04t0532100-01;KEGG=Os04t0532100-01
Chr04	irgsp1_rep	five_prime_UTR	26613779	26613837	.	-	.	Parent=Os04t0532100-01
Chr04	irgsp1_rep	CDS	26613744	26613778	.	-	0	Parent=Os04t0532100-01
Chr04	irgsp1_rep	CDS	26613045	26613289	.	-	1	Parent=Os04t0532100-01
Chr04	irgsp1_rep	CDS	26612880	26612953	.	-	2	Parent=Os04t0532100-01
Chr04	irgsp1_rep	CDS	26612462	26612656	.	-	0	Parent=Os04t0532100-01
Chr04	irgsp1_rep	CDS	26612001	26612381	.	-	0	Parent=Os04t0532100-01
Chr04	irgsp1_rep	three_prime_UTR	26611746	26612000	.	-	.	Parent=Os04t0532100-01
Chr04	irgsp1_rep	mRNA	26615591	26617047	.	+	.	ID=Os04t0532200-01;Name=Os04t0532200-01;Locus_id=Os04g0532200;Note=Conserved hypothetical protein.;Transcript_evidence=AK110853 (DDBJ%2C Best hit);ORF_evidence=B8ASE2 (UniProt);NIAS_FLcDNA=002-172-C08;Expression=AK110853;TENOR=Os04t0532200-01;KEGG=Os04t0532200-01
Chr04	irgsp1_rep	five_prime_UTR	26615591	26616275	.	+	.	Parent=Os04t0532200-01
Chr04	irgsp1_rep	CDS	26616276	26616629	.	+	0	Parent=Os04t0532200-01
Chr04	irgsp1_rep	three_prime_UTR	26616630	26617047	.	+	.	Parent=Os04t0532200-01
Chr04	irgsp1_rep	mRNA	26617453	26619087	.	+	.	ID=Os04t0532400-01;Name=Os04t0532400-01;Locus_id=Os04g0532400;Note=Similar to OSIGBa0125M19.13 protein.;Transcript_evidence=AK318556 (DDBJ%2C Best hit);ORF_evidence=Q00RH3 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J075164K19;TENOR=Os04t0532400-01;KEGG=Os04t0532400-01
Chr04	irgsp1_rep	five_prime_UTR	26617453	26617538	.	+	.	Parent=Os04t0532400-01
Chr04	irgsp1_rep	CDS	26617539	26617573	.	+	0	Parent=Os04t0532400-01
Chr04	irgsp1_rep	CDS	26617676	26617924	.	+	1	Parent=Os04t0532400-01
Chr04	irgsp1_rep	CDS	26618042	26618105	.	+	1	Parent=Os04t0532400-01
Chr04	irgsp1_rep	CDS	26618263	26618457	.	+	0	Parent=Os04t0532400-01
Chr04	irgsp1_rep	CDS	26618557	26618937	.	+	0	Parent=Os04t0532400-01
Chr04	irgsp1_rep	three_prime_UTR	26618938	26619087	.	+	.	Parent=Os04t0532400-01
Chr04	irgsp1_rep	mRNA	26621017	26622583	.	-	.	ID=Os04t0532500-01;Name=Os04t0532500-01;Locus_id=Os04g0532500;Note=Similar to Transcription factor L2.;Transcript_evidence=AK069907 (DDBJ%2C Best hit);ORF_evidence=Q00RH2 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C LIM-type (IPR001781);NIAS_FLcDNA=J023034M24;Expression=AK069907;TENOR=Os04t0532500-01;KEGG=Os04t0532500-01
Chr04	irgsp1_rep	five_prime_UTR	26622520	26622583	.	-	.	Parent=Os04t0532500-01
Chr04	irgsp1_rep	CDS	26622385	26622519	.	-	0	Parent=Os04t0532500-01
Chr04	irgsp1_rep	CDS	26622168	26622267	.	-	0	Parent=Os04t0532500-01
Chr04	irgsp1_rep	CDS	26622055	26622080	.	-	2	Parent=Os04t0532500-01
Chr04	irgsp1_rep	CDS	26621872	26621961	.	-	0	Parent=Os04t0532500-01
Chr04	irgsp1_rep	CDS	26621302	26621556	.	-	0	Parent=Os04t0532500-01
Chr04	irgsp1_rep	three_prime_UTR	26621017	26621301	.	-	.	Parent=Os04t0532500-01
Chr04	irgsp1_rep	mRNA	26637816	26640529	.	-	.	ID=Os04t0532700-01;Name=Os04t0532700-01;Locus_id=Os04g0532700;Note=Hypothetical protein.;Transcript_evidence=AK109796 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-147-E07;TENOR=Os04t0532700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	26640528	26640529	.	-	.	Parent=Os04t0532700-01
Chr04	irgsp1_rep	CDS	26639877	26640527	.	-	0	Parent=Os04t0532700-01
Chr04	irgsp1_rep	CDS	26638874	26638888	.	-	0	Parent=Os04t0532700-01
Chr04	irgsp1_rep	three_prime_UTR	26637816	26638873	.	-	.	Parent=Os04t0532700-01
Chr04	irgsp1_rep	mRNA	26638119	26640661	.	+	.	ID=Os04t0532800-01;Name=Os04t0532800-01;Locus_id=Os04g0532800;Oryzabase Gene Symbol Synonym(s)=R2R3-MYB;Note=Myb transcription factor domain containing protein.;Transcript_evidence=AK107135 (DDBJ%2C Best hit);ORF_evidence=B4FNQ6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=002-124-C09;Oryzabase=16307;Expression=AK107135;TENOR=Os04t0532800-01;KEGG=Os04t0532800-01
Chr04	irgsp1_rep	five_prime_UTR	26638119	26638306	.	+	.	Parent=Os04t0532800-01
Chr04	irgsp1_rep	CDS	26638307	26638442	.	+	0	Parent=Os04t0532800-01
Chr04	irgsp1_rep	CDS	26638775	26638904	.	+	2	Parent=Os04t0532800-01
Chr04	irgsp1_rep	CDS	26639807	26640362	.	+	1	Parent=Os04t0532800-01
Chr04	irgsp1_rep	three_prime_UTR	26640363	26640661	.	+	.	Parent=Os04t0532800-01
Chr04	irgsp1_rep	mRNA	26644078	26649567	.	+	.	ID=Os04t0533000-01;Name=Os04t0533000-01;Locus_id=Os04g0533000;Oryzabase Gene Symbol Synonym(s)=OsRH6;Oryzabase Gene Name Synonym(s)=RNA helicase 6;Note=Similar to RNA helicase (Fragment).;Transcript_evidence=AK101477 (DDBJ%2C Best hit);ORF_evidence=B7EJQ0 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=RNA helicase%2C ATP-dependent%2C DEAD-box%2C conserved site (IPR000629),Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=J033040P11;Oryzabase=19126;Expression=AK101477;TENOR=Os04t0533000-01;KEGG=Os04t0533000-01 (EC:3.6.4.13)
Chr04	irgsp1_rep	five_prime_UTR	26644078	26644240	.	+	.	Parent=Os04t0533000-01
Chr04	irgsp1_rep	CDS	26644241	26644527	.	+	0	Parent=Os04t0533000-01
Chr04	irgsp1_rep	CDS	26645290	26645350	.	+	1	Parent=Os04t0533000-01
Chr04	irgsp1_rep	CDS	26646162	26646396	.	+	0	Parent=Os04t0533000-01
Chr04	irgsp1_rep	CDS	26646522	26646760	.	+	2	Parent=Os04t0533000-01
Chr04	irgsp1_rep	CDS	26647057	26647308	.	+	0	Parent=Os04t0533000-01
Chr04	irgsp1_rep	CDS	26647408	26647588	.	+	0	Parent=Os04t0533000-01
Chr04	irgsp1_rep	CDS	26648374	26648462	.	+	2	Parent=Os04t0533000-01
Chr04	irgsp1_rep	CDS	26648764	26648837	.	+	0	Parent=Os04t0533000-01
Chr04	irgsp1_rep	CDS	26648929	26649007	.	+	1	Parent=Os04t0533000-01
Chr04	irgsp1_rep	three_prime_UTR	26649008	26649081	.	+	.	Parent=Os04t0533000-01
Chr04	irgsp1_rep	three_prime_UTR	26649159	26649567	.	+	.	Parent=Os04t0533000-01
Chr04	irgsp1_rep	mRNA	26644104	26650189	.	+	.	ID=Os04t0533000-02;Name=Os04t0533000-02;Locus_id=Os04g0533000;Oryzabase Gene Symbol Synonym(s)=OsRH6;Oryzabase Gene Name Synonym(s)=RNA helicase 6;Note=Similar to RNA helicase (Fragment).;Transcript_evidence=AK071636 (DDBJ%2C Best hit);ORF_evidence=B7EKD5 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=RNA helicase%2C ATP-dependent%2C DEAD-box%2C conserved site (IPR000629),Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=J023100C24;Oryzabase=19126;Expression=AK071636;TENOR=Os04t0533000-02;KEGG=Os04t0533000-02 (EC:3.6.4.13)
Chr04	irgsp1_rep	five_prime_UTR	26644104	26644240	.	+	.	Parent=Os04t0533000-02
Chr04	irgsp1_rep	CDS	26644241	26644527	.	+	0	Parent=Os04t0533000-02
Chr04	irgsp1_rep	CDS	26645290	26645350	.	+	1	Parent=Os04t0533000-02
Chr04	irgsp1_rep	CDS	26646162	26646396	.	+	0	Parent=Os04t0533000-02
Chr04	irgsp1_rep	CDS	26646522	26646760	.	+	2	Parent=Os04t0533000-02
Chr04	irgsp1_rep	CDS	26647057	26647308	.	+	0	Parent=Os04t0533000-02
Chr04	irgsp1_rep	CDS	26647408	26647588	.	+	0	Parent=Os04t0533000-02
Chr04	irgsp1_rep	CDS	26648374	26648462	.	+	2	Parent=Os04t0533000-02
Chr04	irgsp1_rep	CDS	26648764	26648837	.	+	0	Parent=Os04t0533000-02
Chr04	irgsp1_rep	CDS	26648929	26649007	.	+	1	Parent=Os04t0533000-02
Chr04	irgsp1_rep	three_prime_UTR	26649008	26649081	.	+	.	Parent=Os04t0533000-02
Chr04	irgsp1_rep	three_prime_UTR	26649698	26650189	.	+	.	Parent=Os04t0533000-02
Chr04	irgsp1_rep	mRNA	26659704	26661261	.	+	.	ID=Os04t0533200-00;Name=Os04t0533200-00;Locus_id=Os04g0533200;Note=Similar to Myb7 protein (Fragment).;Transcript_evidence=AK376409 (DDBJ);ORF_evidence=Q43598 (UniProt);TENOR=Os04t0533200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	26659704	26660134	.	+	0	Parent=Os04t0533200-00
Chr04	irgsp1_rep	CDS	26660275	26660404	.	+	1	Parent=Os04t0533200-00
Chr04	irgsp1_rep	CDS	26660767	26661120	.	+	0	Parent=Os04t0533200-00
Chr04	irgsp1_rep	three_prime_UTR	26661121	26661261	.	+	.	Parent=Os04t0533200-00
Chr04	irgsp1_rep	mRNA	26660747	26661401	.	-	.	ID=Os04t0533250-00;Name=Os04t0533250-00;Locus_id=Os04g0533250;Note=Hypothetical gene.;Transcript_evidence=EU971393 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0533250-00;KEGG=Os04t0533250-00
Chr04	irgsp1_rep	five_prime_UTR	26661378	26661401	.	-	.	Parent=Os04t0533250-00
Chr04	irgsp1_rep	CDS	26660838	26661377	.	-	0	Parent=Os04t0533250-00
Chr04	irgsp1_rep	three_prime_UTR	26660747	26660837	.	-	.	Parent=Os04t0533250-00
Chr04	irgsp1_rep	mRNA	26664737	26668216	.	-	.	ID=Os04t0533300-01;Name=Os04t0533300-01;Locus_id=Os04g0533300;CGSNL Gene Symbol=REM1.5;CGSNL Gene Name=REMORIN 1.5;Oryzabase Gene Symbol Synonym(s)=OsREM1.5;Oryzabase Gene Name Synonym(s)=remorin1%2C remorin 1%2C Remorin 1.5%2C remorin group 1 member 5;Note=Similar to Remorin (pp34).;Transcript_evidence=AK103947 (DDBJ%2C Best hit),AK065139 (DDBJ%2C Best hit),AK106182 (DDBJ%2C Best hit);ORF_evidence=NP_001159012.1 (RefSeq);InterPro=Remorin%2C C-terminal (IPR005516),Remorin%2C N-terminal (IPR005518);NIAS_FLcDNA=001-014-B04,J013002A11,001-208-D04;Oryzabase=10237;TENOR=Os04t0533300-01
Chr04	irgsp1_rep	five_prime_UTR	26668091	26668216	.	-	.	Parent=Os04t0533300-01
Chr04	irgsp1_rep	CDS	26667898	26668090	.	-	0	Parent=Os04t0533300-01
Chr04	irgsp1_rep	CDS	26665786	26665842	.	-	2	Parent=Os04t0533300-01
Chr04	irgsp1_rep	CDS	26665618	26665705	.	-	2	Parent=Os04t0533300-01
Chr04	irgsp1_rep	CDS	26665454	26665535	.	-	1	Parent=Os04t0533300-01
Chr04	irgsp1_rep	CDS	26665002	26665202	.	-	0	Parent=Os04t0533300-01
Chr04	irgsp1_rep	three_prime_UTR	26664737	26665001	.	-	.	Parent=Os04t0533300-01
Chr04	irgsp1_rep	mRNA	26664737	26668212	.	-	.	ID=Os04t0533300-02;Name=Os04t0533300-02;Locus_id=Os04g0533300;CGSNL Gene Symbol=REM1.5;CGSNL Gene Name=REMORIN 1.5;Oryzabase Gene Symbol Synonym(s)=OsREM1.5;Oryzabase Gene Name Synonym(s)=remorin1%2C remorin 1%2C Remorin 1.5%2C remorin group 1 member 5;Note=Similar to remorin.;Transcript_evidence=AK104678 (DDBJ%2C Best hit),AK061351 (DDBJ%2C Best hit);ORF_evidence=NP_001159012.1 (RefSeq);InterPro=Remorin%2C C-terminal (IPR005516),Remorin%2C N-terminal (IPR005518);NIAS_FLcDNA=001-035-E03,006-303-F11;Oryzabase=10237;Expression=AK104678;TENOR=Os04t0533300-02;KEGG=Os04t0533300-02
Chr04	irgsp1_rep	CDS	26668024	26668212	.	-	0	Parent=Os04t0533300-02
Chr04	irgsp1_rep	CDS	26667898	26667910	.	-	0	Parent=Os04t0533300-02
Chr04	irgsp1_rep	CDS	26665786	26665842	.	-	2	Parent=Os04t0533300-02
Chr04	irgsp1_rep	CDS	26665618	26665705	.	-	2	Parent=Os04t0533300-02
Chr04	irgsp1_rep	CDS	26665454	26665535	.	-	1	Parent=Os04t0533300-02
Chr04	irgsp1_rep	CDS	26665002	26665202	.	-	0	Parent=Os04t0533300-02
Chr04	irgsp1_rep	three_prime_UTR	26664737	26665001	.	-	.	Parent=Os04t0533300-02
Chr04	irgsp1_rep	mRNA	26674344	26676661	.	-	.	ID=Os04t0533500-02;Name=Os04t0533500-02;Locus_id=Os04g0533500;Note=CytoChrome b561 family protein.;Transcript_evidence=AK061426 (DDBJ%2C Best hit),AK069219 (DDBJ%2C Best hit);ORF_evidence=Q01II4 (UniProt);NIAS_FLcDNA=006-306-G12,J023012J01;Expression=AK061426;TENOR=Os04t0533500-02;KEGG=Os04t0533500-02
Chr04	irgsp1_rep	five_prime_UTR	26676481	26676661	.	-	.	Parent=Os04t0533500-02
Chr04	irgsp1_rep	CDS	26676331	26676480	.	-	0	Parent=Os04t0533500-02
Chr04	irgsp1_rep	CDS	26675241	26675289	.	-	0	Parent=Os04t0533500-02
Chr04	irgsp1_rep	CDS	26674934	26675136	.	-	2	Parent=Os04t0533500-02
Chr04	irgsp1_rep	CDS	26674530	26674838	.	-	0	Parent=Os04t0533500-02
Chr04	irgsp1_rep	three_prime_UTR	26674344	26674529	.	-	.	Parent=Os04t0533500-02
Chr04	irgsp1_rep	mRNA	26678450	26678662	.	-	.	ID=Os04t0533602-00;Name=Os04t0533602-00;Locus_id=Os04g0533602;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os04t0533602-00;KEGG=Os04t0533602-00
Chr04	irgsp1_rep	CDS	26678450	26678662	.	-	0	Parent=Os04t0533602-00
Chr04	irgsp1_rep	mRNA	26679487	26680837	.	+	.	ID=Os04t0533700-00;Name=Os04t0533700-00;Locus_id=Os04g0533700;Oryzabase Gene Symbol Synonym(s)=OsSRP-PTY%2C OrysaZ10;Oryzabase Gene Name Synonym(s)=non-inhibitory serpin-10;Note=Putative non-inhibitory serpin-10.;Transcript_evidence=Q7XMK1 (UniProt);ORF_evidence=Q7XMK1 (UniProt);GO=Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Protease inhibitor I4%2C serpin (IPR000215),Protease inhibitor I4%2C serpin%2C plant (IPR015554),Serpin domain (IPR023796);Oryzabase=11582;TENOR=Os04t0533700-00
Chr04	irgsp1_rep	CDS	26679487	26679831	.	+	0	Parent=Os04t0533700-00
Chr04	irgsp1_rep	CDS	26680004	26680837	.	+	0	Parent=Os04t0533700-00
Chr04	irgsp1_rep	mRNA	26682629	26683945	.	+	.	ID=Os04t0533800-00;Name=Os04t0533800-00;Locus_id=Os04g0533800;Oryzabase Gene Symbol Synonym(s)=OsSRP-PGY%2C OrysaZ11;Oryzabase Gene Name Synonym(s)=non-inhibitory serpin-Z11;Note=Similar to OSIGBa0159I10.4 protein.;Transcript_evidence=BT040291 (DDBJ);ORF_evidence=Q01II1 (UniProt);GO=Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Protease inhibitor I4%2C serpin (IPR000215),Protease inhibitor I4%2C serpin%2C plant (IPR015554),Serpin domain (IPR023796);Oryzabase=11585;TENOR=Os04t0533800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	26682629	26682635	.	+	.	Parent=Os04t0533800-00
Chr04	irgsp1_rep	CDS	26682636	26682981	.	+	0	Parent=Os04t0533800-00
Chr04	irgsp1_rep	CDS	26683107	26683111	.	+	2	Parent=Os04t0533800-00
Chr04	irgsp1_rep	three_prime_UTR	26683112	26683945	.	+	.	Parent=Os04t0533800-00
Chr04	irgsp1_rep	mRNA	26684584	26687711	.	-	.	ID=Os04t0533900-01;Name=Os04t0533900-01;Locus_id=Os04g0533900;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK241719 (DDBJ%2C Best hit);ORF_evidence=Q01II0 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);NIAS_FLcDNA=J065198A06;TENOR=Os04t0533900-01;KEGG=Os04t0533900-01
Chr04	irgsp1_rep	five_prime_UTR	26685214	26687711	.	-	.	Parent=Os04t0533900-01
Chr04	irgsp1_rep	CDS	26685132	26685213	.	-	0	Parent=Os04t0533900-01
Chr04	irgsp1_rep	CDS	26684768	26684937	.	-	2	Parent=Os04t0533900-01
Chr04	irgsp1_rep	three_prime_UTR	26684584	26684767	.	-	.	Parent=Os04t0533900-01
Chr04	irgsp1_rep	mRNA	26689858	26692543	.	+	.	ID=Os04t0534000-01;Name=Os04t0534000-01;Locus_id=Os04g0534000;Note=Protein of unknown function DUF821%2C CAP10-like family protein.;Transcript_evidence=AK066666 (DDBJ%2C Best hit);ORF_evidence=Q01IH9 (UniProt);InterPro=Lipopolysaccharide-modifying protein (IPR006598),Protein of unknown function DUF821%2C CAP10-like (IPR008539);NIAS_FLcDNA=J013073C02;Expression=AK066666;TENOR=Os04t0534000-01;KEGG=Os04t0534000-01
Chr04	irgsp1_rep	five_prime_UTR	26689858	26690034	.	+	.	Parent=Os04t0534000-01
Chr04	irgsp1_rep	CDS	26690035	26690184	.	+	0	Parent=Os04t0534000-01
Chr04	irgsp1_rep	CDS	26690386	26690948	.	+	0	Parent=Os04t0534000-01
Chr04	irgsp1_rep	CDS	26691047	26691239	.	+	1	Parent=Os04t0534000-01
Chr04	irgsp1_rep	CDS	26691365	26691429	.	+	0	Parent=Os04t0534000-01
Chr04	irgsp1_rep	CDS	26691746	26691962	.	+	1	Parent=Os04t0534000-01
Chr04	irgsp1_rep	CDS	26692049	26692387	.	+	0	Parent=Os04t0534000-01
Chr04	irgsp1_rep	three_prime_UTR	26692388	26692543	.	+	.	Parent=Os04t0534000-01
Chr04	irgsp1_rep	mRNA	26695624	26700494	.	+	.	ID=Os04t0534100-01;Name=Os04t0534100-01;Locus_id=Os04g0534100;Note=Similar to OSIGBa0159I10.7 protein.;Transcript_evidence=AK103012 (DDBJ%2C Best hit);ORF_evidence=Q01IH8 (UniProt);InterPro=Lipopolysaccharide-modifying protein (IPR006598),Protein of unknown function DUF821%2C CAP10-like (IPR008539);NIAS_FLcDNA=J033116K10;TENOR=Os04t0534100-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	26695624	26695846	.	+	.	Parent=Os04t0534100-01
Chr04	irgsp1_rep	CDS	26695847	26695987	.	+	0	Parent=Os04t0534100-01
Chr04	irgsp1_rep	CDS	26697472	26698130	.	+	0	Parent=Os04t0534100-01
Chr04	irgsp1_rep	CDS	26698514	26698706	.	+	1	Parent=Os04t0534100-01
Chr04	irgsp1_rep	CDS	26698786	26698850	.	+	0	Parent=Os04t0534100-01
Chr04	irgsp1_rep	CDS	26698965	26699175	.	+	1	Parent=Os04t0534100-01
Chr04	irgsp1_rep	CDS	26699791	26699838	.	+	0	Parent=Os04t0534100-01
Chr04	irgsp1_rep	three_prime_UTR	26699839	26700494	.	+	.	Parent=Os04t0534100-01
Chr04	irgsp1_rep	mRNA	26695780	26700515	.	+	.	ID=Os04t0534100-02;Name=Os04t0534100-02;Locus_id=Os04g0534100;Note=Similar to OSIGBa0159I10.7 protein.;Transcript_evidence=AK059412 (DDBJ%2C Best hit);ORF_evidence=Q01IH8 (UniProt);InterPro=Lipopolysaccharide-modifying protein (IPR006598),Protein of unknown function DUF821%2C CAP10-like (IPR008539);NIAS_FLcDNA=001-027-C11;TENOR=Os04t0534100-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	26695780	26695846	.	+	.	Parent=Os04t0534100-02
Chr04	irgsp1_rep	CDS	26695847	26695987	.	+	0	Parent=Os04t0534100-02
Chr04	irgsp1_rep	CDS	26697472	26698130	.	+	0	Parent=Os04t0534100-02
Chr04	irgsp1_rep	CDS	26698514	26698706	.	+	1	Parent=Os04t0534100-02
Chr04	irgsp1_rep	CDS	26698786	26698850	.	+	0	Parent=Os04t0534100-02
Chr04	irgsp1_rep	CDS	26698965	26699032	.	+	1	Parent=Os04t0534100-02
Chr04	irgsp1_rep	CDS	26700336	26700448	.	+	2	Parent=Os04t0534100-02
Chr04	irgsp1_rep	three_prime_UTR	26700449	26700515	.	+	.	Parent=Os04t0534100-02
Chr04	irgsp1_rep	mRNA	26703331	26705217	.	+	.	ID=Os04t0534166-00;Name=Os04t0534166-00;Locus_id=Os04g0534166;Note=Similar to OSIGBa0159I10.8 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01IH7 (UniProt);InterPro=Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);TENOR=Os04t0534166-00
Chr04	irgsp1_rep	CDS	26703331	26703418	.	+	0	Parent=Os04t0534166-00
Chr04	irgsp1_rep	CDS	26703521	26703659	.	+	2	Parent=Os04t0534166-00
Chr04	irgsp1_rep	CDS	26704578	26704649	.	+	1	Parent=Os04t0534166-00
Chr04	irgsp1_rep	CDS	26704740	26704883	.	+	1	Parent=Os04t0534166-00
Chr04	irgsp1_rep	CDS	26704968	26705096	.	+	1	Parent=Os04t0534166-00
Chr04	irgsp1_rep	CDS	26705202	26705217	.	+	1	Parent=Os04t0534166-00
Chr04	irgsp1_rep	mRNA	26706730	26708531	.	+	.	ID=Os04t0534200-01;Name=Os04t0534200-01;Locus_id=Os04g0534200;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK109583 (DDBJ%2C Best hit);ORF_evidence=Q01IH7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=002-137-A08;Expression=AK109583;TENOR=Os04t0534200-01;KEGG=Os04t0534200-01 (EC:2.7.11.1)
Chr04	irgsp1_rep	five_prime_UTR	26706730	26706808	.	+	.	Parent=Os04t0534200-01
Chr04	irgsp1_rep	CDS	26706809	26707028	.	+	0	Parent=Os04t0534200-01
Chr04	irgsp1_rep	CDS	26707115	26707249	.	+	2	Parent=Os04t0534200-01
Chr04	irgsp1_rep	CDS	26707353	26707549	.	+	2	Parent=Os04t0534200-01
Chr04	irgsp1_rep	three_prime_UTR	26707550	26707917	.	+	.	Parent=Os04t0534200-01
Chr04	irgsp1_rep	three_prime_UTR	26708048	26708531	.	+	.	Parent=Os04t0534200-01
Chr04	irgsp1_rep	mRNA	26709264	26712490	.	+	.	ID=Os04t0534300-01;Name=Os04t0534300-01;Locus_id=Os04g0534300;Note=EF hand domain containing protein.;Transcript_evidence=AK065842 (DDBJ%2C Best hit);ORF_evidence=Q01IH6 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J013043D04;Expression=AK065842;TENOR=Os04t0534300-01;KEGG=Os04t0534300-01
Chr04	irgsp1_rep	five_prime_UTR	26709264	26709290	.	+	.	Parent=Os04t0534300-01
Chr04	irgsp1_rep	CDS	26709291	26709632	.	+	0	Parent=Os04t0534300-01
Chr04	irgsp1_rep	CDS	26710121	26710225	.	+	0	Parent=Os04t0534300-01
Chr04	irgsp1_rep	CDS	26710356	26710517	.	+	0	Parent=Os04t0534300-01
Chr04	irgsp1_rep	CDS	26710608	26710668	.	+	0	Parent=Os04t0534300-01
Chr04	irgsp1_rep	CDS	26711364	26711488	.	+	2	Parent=Os04t0534300-01
Chr04	irgsp1_rep	CDS	26712098	26712169	.	+	0	Parent=Os04t0534300-01
Chr04	irgsp1_rep	three_prime_UTR	26712170	26712490	.	+	.	Parent=Os04t0534300-01
Chr04	irgsp1_rep	mRNA	26712651	26715739	.	-	.	ID=Os04t0534400-01;Name=Os04t0534400-01;Locus_id=Os04g0534400;Note=PapD-like domain containing protein.;Transcript_evidence=AK071369 (DDBJ%2C Best hit);ORF_evidence=Q01IH5 (UniProt);GO=Molecular Function: structural molecule activity (GO:0005198);InterPro=Major sperm protein (IPR000535),PapD-like (IPR008962),Vesicle-associated membrane protein (IPR016763);NIAS_FLcDNA=J023096L07;Expression=AK071369;TENOR=Os04t0534400-01;KEGG=Os04t0534400-01
Chr04	irgsp1_rep	five_prime_UTR	26715525	26715739	.	-	.	Parent=Os04t0534400-01
Chr04	irgsp1_rep	CDS	26715467	26715524	.	-	0	Parent=Os04t0534400-01
Chr04	irgsp1_rep	CDS	26715291	26715361	.	-	2	Parent=Os04t0534400-01
Chr04	irgsp1_rep	CDS	26715058	26715139	.	-	0	Parent=Os04t0534400-01
Chr04	irgsp1_rep	CDS	26714842	26714957	.	-	2	Parent=Os04t0534400-01
Chr04	irgsp1_rep	CDS	26714578	26714733	.	-	0	Parent=Os04t0534400-01
Chr04	irgsp1_rep	CDS	26714460	26714495	.	-	0	Parent=Os04t0534400-01
Chr04	irgsp1_rep	CDS	26714329	26714376	.	-	0	Parent=Os04t0534400-01
Chr04	irgsp1_rep	CDS	26713442	26713519	.	-	0	Parent=Os04t0534400-01
Chr04	irgsp1_rep	CDS	26712977	26713084	.	-	0	Parent=Os04t0534400-01
Chr04	irgsp1_rep	three_prime_UTR	26712651	26712976	.	-	.	Parent=Os04t0534400-01
Chr04	irgsp1_rep	mRNA	26716441	26719460	.	-	.	ID=Os04t0534500-01;Name=Os04t0534500-01;Locus_id=Os04g0534500;Note=Similar to OSIGBa0159I10.11 protein.;Transcript_evidence=AK105805 (DDBJ%2C Best hit);ORF_evidence=Q01IH4 (UniProt);NIAS_FLcDNA=001-203-B06;TENOR=Os04t0534500-01;KEGG=Os04t0534500-01
Chr04	irgsp1_rep	five_prime_UTR	26719378	26719460	.	-	.	Parent=Os04t0534500-01
Chr04	irgsp1_rep	five_prime_UTR	26717694	26717707	.	-	.	Parent=Os04t0534500-01
Chr04	irgsp1_rep	CDS	26716683	26717693	.	-	0	Parent=Os04t0534500-01
Chr04	irgsp1_rep	three_prime_UTR	26716441	26716682	.	-	.	Parent=Os04t0534500-01
Chr04	irgsp1_rep	mRNA	26720079	26721025	.	+	.	ID=Os04t0534600-01;Name=Os04t0534600-01;Locus_id=Os04g0534600;RAP-DB Gene Symbol Synonym(s)=PEX11-4%2C OsPEX11-4;RAP-DB Gene Name Synonym(s)=PEROXIN 11-4%2C Peroxisomal membrane protein 11-4%2C Peroxin-11-4;CGSNL Gene Symbol=PEX11-4;CGSNL Gene Name=PEROXIN 11-4;Oryzabase Gene Symbol Synonym(s)=OsPEX11-4;Oryzabase Gene Name Synonym(s)=Peroxisomal membrane protein 11-4%2C Peroxin-11-4;Note=Peroxisomal protein%2C Response to salt and low nitrogen stresses;Transcript_evidence=AK073835,AK287635;ORF_evidence=Q7XU74;GO=Biological Process: peroxisome fission (GO:0016559),Cellular Component: integral component of peroxisomal membrane (GO:0005779);InterPro=Peroxisomal biogenesis factor 11 (IPR008733);NIAS_FLcDNA=J033067E13, J065076D16;Manual Curation=October 5%2C 2016;Literature_PMID=18291602;Oryzabase=7185;Expression=AK073835;TENOR=Os04t0534600-01;KEGG=Os04t0534600-01
Chr04	irgsp1_rep	five_prime_UTR	26720079	26720173	.	+	.	Parent=Os04t0534600-01
Chr04	irgsp1_rep	CDS	26720174	26720842	.	+	0	Parent=Os04t0534600-01
Chr04	irgsp1_rep	three_prime_UTR	26720843	26721025	.	+	.	Parent=Os04t0534600-01
Chr04	irgsp1_rep	mRNA	26722237	26722914	.	+	.	ID=Os04t0534801-01;Name=Os04t0534801-01;Locus_id=Os04g0534801;Note=Conserved hypothetical protein.;Transcript_evidence=AK242249 (DDBJ%2C Best hit);ORF_evidence=NP_001174026.1 (RefSeq);NIAS_FLcDNA=J075181K04;TENOR=Os04t0534801-01;KEGG=Os04t0534801-01
Chr04	irgsp1_rep	CDS	26722237	26722728	.	+	0	Parent=Os04t0534801-01
Chr04	irgsp1_rep	three_prime_UTR	26722729	26722914	.	+	.	Parent=Os04t0534801-01
Chr04	irgsp1_rep	mRNA	26727273	26739488	.	+	.	ID=Os04t0535000-01;Name=Os04t0535000-01;Locus_id=Os04g0535000;Note=Hypothetical protein.;Transcript_evidence=AK067144 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J013096F13;TENOR=Os04t0535000-01;B5toI1=Exon-intron structures and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	26727273	26727889	.	+	.	Parent=Os04t0535000-01
Chr04	irgsp1_rep	five_prime_UTR	26729152	26729230	.	+	.	Parent=Os04t0535000-01
Chr04	irgsp1_rep	five_prime_UTR	26730646	26731306	.	+	.	Parent=Os04t0535000-01
Chr04	irgsp1_rep	five_prime_UTR	26731526	26731804	.	+	.	Parent=Os04t0535000-01
Chr04	irgsp1_rep	five_prime_UTR	26733889	26733918	.	+	.	Parent=Os04t0535000-01
Chr04	irgsp1_rep	CDS	26733919	26734029	.	+	0	Parent=Os04t0535000-01
Chr04	irgsp1_rep	CDS	26734179	26734253	.	+	0	Parent=Os04t0535000-01
Chr04	irgsp1_rep	CDS	26734474	26734716	.	+	0	Parent=Os04t0535000-01
Chr04	irgsp1_rep	three_prime_UTR	26734717	26734985	.	+	.	Parent=Os04t0535000-01
Chr04	irgsp1_rep	three_prime_UTR	26735987	26736331	.	+	.	Parent=Os04t0535000-01
Chr04	irgsp1_rep	three_prime_UTR	26736437	26736543	.	+	.	Parent=Os04t0535000-01
Chr04	irgsp1_rep	three_prime_UTR	26736650	26736699	.	+	.	Parent=Os04t0535000-01
Chr04	irgsp1_rep	three_prime_UTR	26736786	26736826	.	+	.	Parent=Os04t0535000-01
Chr04	irgsp1_rep	three_prime_UTR	26738804	26739488	.	+	.	Parent=Os04t0535000-01
Chr04	irgsp1_rep	mRNA	26746714	26748520	.	-	.	ID=Os04t0535200-02;Name=Os04t0535200-02;Locus_id=Os04g0535200;Note=Peptidase A1 domain containing protein.;Transcript_evidence=AK101505 (DDBJ%2C Best hit),AK060585 (DDBJ%2C Best hit),AK119767 (DDBJ%2C Best hit);ORF_evidence=Q01IH2 (UniProt);NIAS_FLcDNA=J033044F04,001-024-B02,002-172-E10;Expression=AK101505;TENOR=Os04t0535200-02;KEGG=Os04t0535200-02
Chr04	irgsp1_rep	five_prime_UTR	26748478	26748520	.	-	.	Parent=Os04t0535200-02
Chr04	irgsp1_rep	CDS	26746999	26748477	.	-	0	Parent=Os04t0535200-02
Chr04	irgsp1_rep	three_prime_UTR	26746714	26746998	.	-	.	Parent=Os04t0535200-02
Chr04	irgsp1_rep	mRNA	26754463	26757287	.	-	.	ID=Os04t0535400-01;Name=Os04t0535400-01;Locus_id=Os04g0535400;Note=Histidine triad motif domain containing protein.;Transcript_evidence=AK108422 (DDBJ%2C Best hit);ORF_evidence=Q01IH1 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Histidine triad (HIT) protein (IPR001310),Histidine triad-like motif (IPR011146),Histidine triad motif (IPR011151);NIAS_FLcDNA=002-143-A03;Expression=AK108422;TENOR=Os04t0535400-01;KEGG=Os04t0535400-01
Chr04	irgsp1_rep	five_prime_UTR	26757093	26757287	.	-	.	Parent=Os04t0535400-01
Chr04	irgsp1_rep	CDS	26756961	26757092	.	-	0	Parent=Os04t0535400-01
Chr04	irgsp1_rep	CDS	26756813	26756859	.	-	0	Parent=Os04t0535400-01
Chr04	irgsp1_rep	CDS	26755313	26755389	.	-	1	Parent=Os04t0535400-01
Chr04	irgsp1_rep	CDS	26755149	26755215	.	-	2	Parent=Os04t0535400-01
Chr04	irgsp1_rep	CDS	26754886	26754963	.	-	1	Parent=Os04t0535400-01
Chr04	irgsp1_rep	CDS	26754709	26754793	.	-	1	Parent=Os04t0535400-01
Chr04	irgsp1_rep	three_prime_UTR	26754463	26754708	.	-	.	Parent=Os04t0535400-01
Chr04	irgsp1_rep	mRNA	26764494	26767814	.	-	.	ID=Os04t0535501-01;Name=Os04t0535501-01;Locus_id=Os04g0535501;Note=Hypothetical gene.;Transcript_evidence=AK288318 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090021N14;TENOR=Os04t0535501-01;KEGG=Os04t0535501-01
Chr04	irgsp1_rep	five_prime_UTR	26766065	26767814	.	-	.	Parent=Os04t0535501-01
Chr04	irgsp1_rep	CDS	26765453	26766064	.	-	0	Parent=Os04t0535501-01
Chr04	irgsp1_rep	three_prime_UTR	26764494	26765452	.	-	.	Parent=Os04t0535501-01
Chr04	irgsp1_rep	mRNA	26765388	26771869	.	+	.	ID=Os04t0535600-01;Name=Os04t0535600-01;Locus_id=Os04g0535600;RAP-DB Gene Symbol Synonym(s)=OsINV2;RAP-DB Gene Name Synonym(s)=vacuolar invertase 2;Oryzabase Gene Symbol Synonym(s)=OSINV2%2C OsINV2%2C OsVIN1%2C VIN1;Oryzabase Gene Name Synonym(s)=vacuolar acid invertase 2%2C vacuolar invertase 1;Note=Vacuolar invertase%2C Homolog of OsINV3%2C Sucrose metabolism%2C Regulation of grain size;Transcript_evidence=AK099312,AK065130;ORF_evidence=Q0JBF1;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: beta-fructofuranosidase activity (GO:0004564),Molecular Function: sucrose alpha-glucosidase activity (GO:0004575);InterPro=Glycosyl hydrolase%2C five-bladed beta-propellor domain superfamily (IPR023296),Concanavalin A-like lectin/glucanase domain superfamily (IPR013320),Glycoside hydrolase%2C family 32 (IPR001362),Beta-fructofuranosidase (IPR021792),Glycosyl hydrolase family 32%2C N-terminal (IPR013148),Glycosyl hydrolase family 32%2C C-terminal (IPR013189),Glycoside hydrolase%2C family 32%2C active site (IPR018053);NIAS_FLcDNA=J023147H06,J013001P13;Manual Curation=March 30%2C 2020;Literature_PMID=32209971;Oryzabase=11687;Expression=AK099312;TENOR=Os04t0535600-01;KEGG=Os04t0535600-01 (EC:3.2.1.26);Subcellular location=protoplast (GO:0005622)
Chr04	irgsp1_rep	five_prime_UTR	26765388	26765512	.	+	.	Parent=Os04t0535600-01
Chr04	irgsp1_rep	CDS	26765513	26765915	.	+	0	Parent=Os04t0535600-01
Chr04	irgsp1_rep	CDS	26766100	26766108	.	+	2	Parent=Os04t0535600-01
Chr04	irgsp1_rep	CDS	26766239	26767110	.	+	2	Parent=Os04t0535600-01
Chr04	irgsp1_rep	CDS	26770531	26770692	.	+	0	Parent=Os04t0535600-01
Chr04	irgsp1_rep	CDS	26770843	26771084	.	+	0	Parent=Os04t0535600-01
Chr04	irgsp1_rep	CDS	26771337	26771424	.	+	1	Parent=Os04t0535600-01
Chr04	irgsp1_rep	CDS	26771529	26771723	.	+	0	Parent=Os04t0535600-01
Chr04	irgsp1_rep	three_prime_UTR	26771724	26771869	.	+	.	Parent=Os04t0535600-01
Chr04	irgsp1_rep	mRNA	26765452	26770560	.	+	.	ID=Os04t0535600-02;Name=Os04t0535600-02;Locus_id=Os04g0535600;Oryzabase Gene Symbol Synonym(s)=OSINV2%2C OsINV2%2C OsVIN1%2C VIN1;Oryzabase Gene Name Synonym(s)=vacuolar acid invertase 2%2C vacuolar invertase 1;Note=Similar to H0502G05.3 protein.;Transcript_evidence=AK099126 (DDBJ%2C Best hit);ORF_evidence=Q01IH0 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: beta-fructofuranosidase activity (GO:0004564),Molecular Function: sucrose alpha-glucosidase activity (GO:0004575);InterPro=Glycoside hydrolase%2C family 32 (IPR001362),Glycosyl hydrolases family 32%2C N-terminal (IPR013148),Glycoside hydrolase%2C family 32%2C active site (IPR018053),Beta-fructofuranosidase (IPR021792),Glycosyl hydrolase family 43%2C five-bladed beta-propellor domain (IPR023296);NIAS_FLcDNA=J023042C22;Oryzabase=11687;Expression=AK099126;TENOR=Os04t0535600-02;KEGG=Os04t0535600-02 (EC:3.2.1.26)
Chr04	irgsp1_rep	five_prime_UTR	26765452	26765512	.	+	.	Parent=Os04t0535600-02
Chr04	irgsp1_rep	CDS	26765513	26765915	.	+	0	Parent=Os04t0535600-02
Chr04	irgsp1_rep	CDS	26766100	26766108	.	+	2	Parent=Os04t0535600-02
Chr04	irgsp1_rep	CDS	26766239	26767110	.	+	2	Parent=Os04t0535600-02
Chr04	irgsp1_rep	CDS	26770531	26770560	.	+	0	Parent=Os04t0535600-02
Chr04	irgsp1_rep	mRNA	26797695	26800253	.	-	.	ID=Os04t0536300-01;Name=Os04t0536300-01;Locus_id=Os04g0536300;RAP-DB Gene Symbol Synonym(s)=YAB5%2C OsYABBY5%2C OsYAB3%2C YAB3%2C Os YABBY5%2C TOB1;RAP-DB Gene Name Synonym(s)=YABBY 5%2C Protein YABBY 5%2C TONGARI-BOUSHI1;CGSNL Gene Symbol=YAB5;CGSNL Gene Name=YABBY 5;Oryzabase Gene Symbol Synonym(s)=OsYABBY5%2C OsYAB3%2C YAB3%2C Os YABBY5%2C TOB1%2C OsTPB1;Oryzabase Gene Name Synonym(s)=Protein YABBY 5%2C TONGARI-BOUSHI1%2C TONGARI-BOUSHI 1;Note=Transcription factor with zinc finger domain and helix-loop-helix domain (YABBY domain)%2C Leaf development;Transcript_evidence=AK070205 (Genbank),AB274017 (Genbank);ORF_evidence=B7EHI2 (UniProt),Q0JBF0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=YABBY protein (IPR006780),High mobility group%2C superfamily (IPR009071);Manual Curation=August 17%2C 2009;Literature_PMID=17351053,17216490;Oryzabase=7497;TENOR=Os04t0536300-01;KEGG=Os04t0536300-01
Chr04	irgsp1_rep	five_prime_UTR	26800112	26800253	.	-	.	Parent=Os04t0536300-01
Chr04	irgsp1_rep	CDS	26799980	26800111	.	-	0	Parent=Os04t0536300-01
Chr04	irgsp1_rep	CDS	26799684	26799857	.	-	0	Parent=Os04t0536300-01
Chr04	irgsp1_rep	CDS	26799413	26799602	.	-	0	Parent=Os04t0536300-01
Chr04	irgsp1_rep	CDS	26798661	26798709	.	-	2	Parent=Os04t0536300-01
Chr04	irgsp1_rep	CDS	26798471	26798546	.	-	1	Parent=Os04t0536300-01
Chr04	irgsp1_rep	CDS	26798273	26798347	.	-	0	Parent=Os04t0536300-01
Chr04	irgsp1_rep	CDS	26798052	26798156	.	-	0	Parent=Os04t0536300-01
Chr04	irgsp1_rep	three_prime_UTR	26797695	26798051	.	-	.	Parent=Os04t0536300-01
Chr04	irgsp1_rep	mRNA	26804277	26806613	.	-	.	ID=Os04t0536500-01;Name=Os04t0536500-01;Locus_id=Os04g0536500;CGSNL Gene Symbol=NAC82;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 82;Oryzabase Gene Symbol Synonym(s)=OsSWN6%2C ONAC082%2C ONAC82;Oryzabase Gene Name Synonym(s)=secondary wall NAC transcription factor 6%2C secondary wall-associated NAC 6%2C SECONDARY WALL NAC DOMAIN PROTEIN 6%2C NAC domain-containing protein 082%2C NAC domain-containing protein 82;Note=Similar to H0502G05.5 protein.;Transcript_evidence=AK109552 (DDBJ%2C Best hit);ORF_evidence=Q01JG1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=002-124-A06;Oryzabase=15022;TENOR=Os04t0536500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	26806495	26806613	.	-	.	Parent=Os04t0536500-01
Chr04	irgsp1_rep	five_prime_UTR	26805630	26805682	.	-	.	Parent=Os04t0536500-01
Chr04	irgsp1_rep	CDS	26805470	26805629	.	-	0	Parent=Os04t0536500-01
Chr04	irgsp1_rep	CDS	26805034	26805362	.	-	2	Parent=Os04t0536500-01
Chr04	irgsp1_rep	three_prime_UTR	26804277	26805033	.	-	.	Parent=Os04t0536500-01
Chr04	irgsp1_rep	mRNA	26831005	26831867	.	+	.	ID=Os04t0537100-01;Name=Os04t0537100-01;Locus_id=Os04g0537100;CGSNL Gene Symbol=SAUR19;CGSNL Gene Name=SMALL AUXIN-UP RNA 19;Oryzabase Gene Symbol Synonym(s)=OsSAUR19;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 19;Note=Similar to Auxin-induced protein X15.;Transcript_evidence=AK108118 (DDBJ%2C Best hit);ORF_evidence=Q01JF8 (UniProt);InterPro=Auxin responsive SAUR protein (IPR003676);NIAS_FLcDNA=002-139-C07;Oryzabase=9144;Expression=AK108118;TENOR=Os04t0537100-01;KEGG=Os04t0537100-01
Chr04	irgsp1_rep	five_prime_UTR	26831005	26831099	.	+	.	Parent=Os04t0537100-01
Chr04	irgsp1_rep	CDS	26831100	26831603	.	+	0	Parent=Os04t0537100-01
Chr04	irgsp1_rep	three_prime_UTR	26831604	26831867	.	+	.	Parent=Os04t0537100-01
Chr04	irgsp1_rep	mRNA	26834695	26835104	.	-	.	ID=Os04t0537450-00;Name=Os04t0537450-00;Locus_id=Os04g0537450;Note=Non-protein coding transcript.;Transcript_evidence=CT835085 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os04t0537450-00
Chr04	irgsp1_rep	exon	26834695	26835104	.	-	.	Parent=Os04t0537450-00
Chr04	irgsp1_rep	mRNA	26900944	26903966	.	+	.	ID=Os04t0537800-01;Name=Os04t0537800-01;Locus_id=Os04g0537800;Note=Protein of unknown function DUF26 domain containing protein.;Transcript_evidence=AK103654 (DDBJ%2C Best hit);ORF_evidence=NP_001148227.1 (RefSeq);InterPro=Gnk2-homologous domain (IPR002902);NIAS_FLcDNA=J033135E09;Expression=AK103654;TENOR=Os04t0537800-01;KEGG=Os04t0537800-01
Chr04	irgsp1_rep	five_prime_UTR	26900944	26901090	.	+	.	Parent=Os04t0537800-01
Chr04	irgsp1_rep	CDS	26901091	26901814	.	+	0	Parent=Os04t0537800-01
Chr04	irgsp1_rep	CDS	26903412	26903513	.	+	2	Parent=Os04t0537800-01
Chr04	irgsp1_rep	CDS	26903687	26903691	.	+	2	Parent=Os04t0537800-01
Chr04	irgsp1_rep	three_prime_UTR	26903692	26903966	.	+	.	Parent=Os04t0537800-01
Chr04	irgsp1_rep	mRNA	26903901	26908676	.	-	.	ID=Os04t0537900-01;Name=Os04t0537900-01;Locus_id=Os04g0537900;RAP-DB Gene Symbol Synonym(s)=GLUP3%2C glup3(esp7)%2C esp7%2C glup3%2C OsVPE1%2C VPE1%2C OsaLeg3;RAP-DB Gene Name Synonym(s)=GLUTELIN PRECURSOR 3%2C glutelin precursor3%2C glutelin precursor 3%2C glutelin precursor-3%2C vacuolar processing enzyme 1%2C legumain 3;CGSNL Gene Symbol=GLUP3;CGSNL Gene Name=GLUTELIN PRECURSOR 3;Oryzabase Gene Symbol Synonym(s)=glup3(esp7)%2C esp7%2C glup3%2C OsVPE1%2C VPE1%2C OsaLeg3;Oryzabase Gene Name Synonym(s)=glutelin precursor3%2C glutelin precursor 3%2C glutelin precursor-3%2C vacuolar processing enzyme 1%2C legumain 3;Note=Seed-type vacuolar processing enzyme (VPE)%2C Glutelin maturation;Transcript_evidence=AB109637 (Genbank),AK103573 (Genbank);ORF_evidence=Q84LM2 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197);InterPro=Peptidase C13%2C legumain (IPR001096);NIAS_FLcDNA=J033132N22;Manual Curation=June 23%2C 2009;Literature_PMID=19154227;Oryzabase=583;Expression=AK103573;TENOR=Os04t0537900-01;KEGG=Os04t0537900-01 (EC:3.4.22.34)
Chr04	irgsp1_rep	five_prime_UTR	26908623	26908676	.	-	.	Parent=Os04t0537900-01
Chr04	irgsp1_rep	CDS	26908386	26908622	.	-	0	Parent=Os04t0537900-01
Chr04	irgsp1_rep	CDS	26907489	26907653	.	-	0	Parent=Os04t0537900-01
Chr04	irgsp1_rep	CDS	26907154	26907310	.	-	0	Parent=Os04t0537900-01
Chr04	irgsp1_rep	CDS	26906994	26907079	.	-	2	Parent=Os04t0537900-01
Chr04	irgsp1_rep	CDS	26906707	26906906	.	-	0	Parent=Os04t0537900-01
Chr04	irgsp1_rep	CDS	26906070	26906118	.	-	1	Parent=Os04t0537900-01
Chr04	irgsp1_rep	CDS	26905798	26906004	.	-	0	Parent=Os04t0537900-01
Chr04	irgsp1_rep	CDS	26904523	26904729	.	-	0	Parent=Os04t0537900-01
Chr04	irgsp1_rep	CDS	26904209	26904394	.	-	0	Parent=Os04t0537900-01
Chr04	irgsp1_rep	three_prime_UTR	26903901	26904208	.	-	.	Parent=Os04t0537900-01
Chr04	irgsp1_rep	mRNA	26913320	26916717	.	+	.	ID=Os04t0538000-01;Name=Os04t0538000-01;Locus_id=Os04g0538000;CGSNL Gene Symbol=STI1B;CGSNL Gene Name=STRESS-INDUCED PROTEIN 1B;Oryzabase Gene Symbol Synonym(s)=OsHop/Sti1b%2C Hop/Sti1b%2C Sti1b;Oryzabase Gene Name Synonym(s)=stress-induced protein 1b%2C Hop/Sti1 homolog b%2C STI1 homolog b%2C Hsp90 co-chaperone Hop/Sti1b%2C Hsp70-Hsp90 Organizing Protein/stress-induced protein 1b;Note=Tetratricopeptide TPR-1 domain containing protein.;Transcript_evidence=AK108550 (DDBJ%2C Best hit);ORF_evidence=Q7XQQ8 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide TPR-1 (IPR001440),Heat shock chaperonin-binding (IPR006636),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide TPR2 (IPR013105),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=002-144-E04;Oryzabase=22664;TENOR=Os04t0538000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	26913320	26914303	.	+	0	Parent=Os04t0538000-01
Chr04	irgsp1_rep	CDS	26914762	26915050	.	+	0	Parent=Os04t0538000-01
Chr04	irgsp1_rep	CDS	26915142	26915227	.	+	2	Parent=Os04t0538000-01
Chr04	irgsp1_rep	CDS	26915479	26915702	.	+	0	Parent=Os04t0538000-01
Chr04	irgsp1_rep	CDS	26915789	26915855	.	+	1	Parent=Os04t0538000-01
Chr04	irgsp1_rep	CDS	26916313	26916372	.	+	0	Parent=Os04t0538000-01
Chr04	irgsp1_rep	CDS	26916465	26916578	.	+	0	Parent=Os04t0538000-01
Chr04	irgsp1_rep	three_prime_UTR	26916579	26916717	.	+	.	Parent=Os04t0538000-01
Chr04	irgsp1_rep	mRNA	26916461	26919727	.	+	.	ID=Os04t0538000-02;Name=Os04t0538000-02;Locus_id=Os04g0538000;CGSNL Gene Symbol=STI1B;CGSNL Gene Name=STRESS-INDUCED PROTEIN 1B;Oryzabase Gene Symbol Synonym(s)=OsHop/Sti1b%2C Hop/Sti1b%2C Sti1b;Oryzabase Gene Name Synonym(s)=stress-induced protein 1b%2C Hop/Sti1 homolog b%2C STI1 homolog b%2C Hsp90 co-chaperone Hop/Sti1b%2C Hsp70-Hsp90 Organizing Protein/stress-induced protein 1b;Note=Hypothetical gene.;Transcript_evidence=AK108496 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-143-G10;Oryzabase=22664;TENOR=Os04t0538000-02
Chr04	irgsp1_rep	five_prime_UTR	26916461	26916548	.	+	.	Parent=Os04t0538000-02
Chr04	irgsp1_rep	five_prime_UTR	26918135	26918319	.	+	.	Parent=Os04t0538000-02
Chr04	irgsp1_rep	five_prime_UTR	26918472	26918690	.	+	.	Parent=Os04t0538000-02
Chr04	irgsp1_rep	five_prime_UTR	26919359	26919453	.	+	.	Parent=Os04t0538000-02
Chr04	irgsp1_rep	CDS	26919454	26919727	.	+	0	Parent=Os04t0538000-02
Chr04	irgsp1_rep	mRNA	26917910	26919741	.	-	.	ID=Os04t0538100-01;Name=Os04t0538100-01;Locus_id=Os04g0538100;Note=Elongation factor G%2C III and V domain containing protein.;Transcript_evidence=AK058778 (DDBJ%2C Best hit);ORF_evidence=XP_002886457.1 (RefSeq);GO=Molecular Function: GTP binding (GO:0005525);InterPro=Translation elongation factor EFG/EF2%2C C-terminal (IPR000640),Translation elongation factor EFTu/EF1A%2C domain 2 (IPR004161),Translation elongation factor EFG/EF2%2C domain IV (IPR005517),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Elongation factor G/III/V (IPR009022),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=001-002-B12;Expression=AK058778;TENOR=Os04t0538100-01;KEGG=Os04t0538100-01 (EC:3.6.5.3)
Chr04	irgsp1_rep	five_prime_UTR	26919741	26919741	.	-	.	Parent=Os04t0538100-01
Chr04	irgsp1_rep	CDS	26919267	26919740	.	-	0	Parent=Os04t0538100-01
Chr04	irgsp1_rep	CDS	26918383	26918895	.	-	0	Parent=Os04t0538100-01
Chr04	irgsp1_rep	CDS	26918121	26918294	.	-	0	Parent=Os04t0538100-01
Chr04	irgsp1_rep	three_prime_UTR	26917910	26918120	.	-	.	Parent=Os04t0538100-01
Chr04	irgsp1_rep	mRNA	26920269	26920691	.	-	.	ID=Os04t0538166-00;Name=Os04t0538166-00;Locus_id=Os04g0538166;Note=Similar to Elongation factor G%2C chloroplastic.;Transcript_evidence=P35450 (UniProt);ORF_evidence=P35450 (UniProt);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Protein synthesis factor%2C GTP-binding (IPR000795),Small GTP-binding protein domain (IPR005225);TENOR=Os04t0538166-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	26920269	26920691	.	-	0	Parent=Os04t0538166-00
Chr04	irgsp1_rep	mRNA	26925996	26926313	.	-	.	ID=Os04t0538300-00;Name=Os04t0538300-00;Locus_id=Os04g0538300;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001174027.1 (RefSeq);TENOR=Os04t0538300-00;KEGG=Os04t0538300-00
Chr04	irgsp1_rep	CDS	26925996	26926313	.	-	0	Parent=Os04t0538300-00
Chr04	irgsp1_rep	mRNA	26931464	26932639	.	-	.	ID=Os04t0538400-01;Name=Os04t0538400-01;Locus_id=Os04g0538400;Oryzabase Gene Name Synonym(s)=OsNodulin-like1%2C Nodulin-like1%2C vacuolar iron transporter homolog 2;Note=Similar to Nodulin 21 (N-21).;Transcript_evidence=AK108230 (DDBJ%2C Best hit);ORF_evidence=Q9M2C3 (UniProt);InterPro=Domain of unknown function DUF125%2C transmembrane (IPR008217);NIAS_FLcDNA=002-140-G01;Oryzabase=21392;Expression=AK108230;TENOR=Os04t0538400-01;KEGG=Os04t0538400-01
Chr04	irgsp1_rep	five_prime_UTR	26932471	26932639	.	-	.	Parent=Os04t0538400-01
Chr04	irgsp1_rep	CDS	26931727	26932470	.	-	0	Parent=Os04t0538400-01
Chr04	irgsp1_rep	three_prime_UTR	26931464	26931726	.	-	.	Parent=Os04t0538400-01
Chr04	irgsp1_rep	mRNA	26954474	26960262	.	-	.	ID=Os04t0538700-01;Name=Os04t0538700-01;Locus_id=Os04g0538700;CGSNL Gene Symbol=ATG13B;CGSNL Gene Name=AUTOPHAGY ASSOCIATED GENE 13B;Oryzabase Gene Symbol Synonym(s)=OsATG13b;Oryzabase Gene Name Synonym(s)=autophagy 13b;Note=Autophagy-related protein 13 domain containing protein.;Transcript_evidence=AK105628 (DDBJ%2C Best hit);ORF_evidence=Q7XU21 (UniProt);InterPro=Autophagy-related protein 13 (IPR018731);NIAS_FLcDNA=001-200-D03;Oryzabase=9658;TENOR=Os04t0538700-01
Chr04	irgsp1_rep	five_prime_UTR	26959985	26960262	.	-	.	Parent=Os04t0538700-01
Chr04	irgsp1_rep	CDS	26958848	26959984	.	-	0	Parent=Os04t0538700-01
Chr04	irgsp1_rep	CDS	26957891	26958024	.	-	0	Parent=Os04t0538700-01
Chr04	irgsp1_rep	CDS	26954814	26955105	.	-	1	Parent=Os04t0538700-01
Chr04	irgsp1_rep	three_prime_UTR	26954474	26954813	.	-	.	Parent=Os04t0538700-01
Chr04	irgsp1_rep	mRNA	26954474	26960214	.	-	.	ID=Os04t0538700-02;Name=Os04t0538700-02;Locus_id=Os04g0538700;CGSNL Gene Symbol=ATG13B;CGSNL Gene Name=AUTOPHAGY ASSOCIATED GENE 13B;Oryzabase Gene Symbol Synonym(s)=OsATG13b;Oryzabase Gene Name Synonym(s)=autophagy 13b;Note=Autophagy-related protein 13 domain containing protein.;Transcript_evidence=AK121283 (DDBJ%2C Best hit);ORF_evidence=Q7XU21 (UniProt);InterPro=Autophagy-related protein 13 (IPR018731);NIAS_FLcDNA=J023108N03;Oryzabase=9658;TENOR=Os04t0538700-02
Chr04	irgsp1_rep	five_prime_UTR	26959985	26960214	.	-	.	Parent=Os04t0538700-02
Chr04	irgsp1_rep	CDS	26958848	26959984	.	-	0	Parent=Os04t0538700-02
Chr04	irgsp1_rep	CDS	26957891	26958024	.	-	0	Parent=Os04t0538700-02
Chr04	irgsp1_rep	CDS	26954814	26955105	.	-	1	Parent=Os04t0538700-02
Chr04	irgsp1_rep	three_prime_UTR	26954474	26954813	.	-	.	Parent=Os04t0538700-02
Chr04	irgsp1_rep	mRNA	26961634	26962448	.	+	.	ID=Os04t0538750-01;Name=Os04t0538750-01;Locus_id=Os04g0538750;Note=Conserved hypothetical protein.;Transcript_evidence=AK242587 (DDBJ%2C Best hit);ORF_evidence=NP_001047719.1 (RefSeq);NIAS_FLcDNA=J090011D18;TENOR=Os04t0538750-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	26961634	26961798	.	+	.	Parent=Os04t0538750-01
Chr04	irgsp1_rep	CDS	26961799	26962140	.	+	0	Parent=Os04t0538750-01
Chr04	irgsp1_rep	three_prime_UTR	26962141	26962448	.	+	.	Parent=Os04t0538750-01
Chr04	irgsp1_rep	mRNA	26962438	26968050	.	-	.	ID=Os04t0538800-01;Name=Os04t0538800-01;Locus_id=Os04g0538800;Note=Similar to Kinesin heavy chain (Fragment).;Transcript_evidence=AK102262 (DDBJ%2C Best hit);ORF_evidence=Q93XF3 (UniProt);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752),Kinesin%2C motor region%2C conserved site (IPR019821),Protein of unknown function DUF3490 (IPR021881);NIAS_FLcDNA=J033088K23;Expression=AK102262;TENOR=Os04t0538800-01;KEGG=Os04t0538800-01
Chr04	irgsp1_rep	five_prime_UTR	26967836	26968050	.	-	.	Parent=Os04t0538800-01
Chr04	irgsp1_rep	five_prime_UTR	26967249	26967313	.	-	.	Parent=Os04t0538800-01
Chr04	irgsp1_rep	CDS	26966999	26967248	.	-	0	Parent=Os04t0538800-01
Chr04	irgsp1_rep	CDS	26966422	26966511	.	-	2	Parent=Os04t0538800-01
Chr04	irgsp1_rep	CDS	26966217	26966317	.	-	2	Parent=Os04t0538800-01
Chr04	irgsp1_rep	CDS	26966003	26966116	.	-	0	Parent=Os04t0538800-01
Chr04	irgsp1_rep	CDS	26965832	26965913	.	-	0	Parent=Os04t0538800-01
Chr04	irgsp1_rep	CDS	26965669	26965736	.	-	2	Parent=Os04t0538800-01
Chr04	irgsp1_rep	CDS	26965496	26965561	.	-	0	Parent=Os04t0538800-01
Chr04	irgsp1_rep	CDS	26965289	26965413	.	-	0	Parent=Os04t0538800-01
Chr04	irgsp1_rep	CDS	26964855	26965182	.	-	1	Parent=Os04t0538800-01
Chr04	irgsp1_rep	CDS	26964565	26964678	.	-	0	Parent=Os04t0538800-01
Chr04	irgsp1_rep	CDS	26963613	26964485	.	-	0	Parent=Os04t0538800-01
Chr04	irgsp1_rep	CDS	26963110	26963411	.	-	0	Parent=Os04t0538800-01
Chr04	irgsp1_rep	CDS	26962693	26963017	.	-	1	Parent=Os04t0538800-01
Chr04	irgsp1_rep	three_prime_UTR	26962438	26962692	.	-	.	Parent=Os04t0538800-01
Chr04	irgsp1_rep	mRNA	26962639	26967316	.	+	.	ID=Os04t0538850-00;Name=Os04t0538850-00;Locus_id=Os04g0538850;Note=Hypothetical protein.;Transcript_evidence=tplb0030a08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0538850-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	26962639	26963044	.	+	.	Parent=Os04t0538850-00
Chr04	irgsp1_rep	five_prime_UTR	26963123	26963396	.	+	.	Parent=Os04t0538850-00
Chr04	irgsp1_rep	five_prime_UTR	26963592	26963847	.	+	.	Parent=Os04t0538850-00
Chr04	irgsp1_rep	CDS	26963848	26964249	.	+	0	Parent=Os04t0538850-00
Chr04	irgsp1_rep	three_prime_UTR	26964250	26964470	.	+	.	Parent=Os04t0538850-00
Chr04	irgsp1_rep	three_prime_UTR	26964556	26964678	.	+	.	Parent=Os04t0538850-00
Chr04	irgsp1_rep	three_prime_UTR	26964855	26965182	.	+	.	Parent=Os04t0538850-00
Chr04	irgsp1_rep	three_prime_UTR	26965289	26965420	.	+	.	Parent=Os04t0538850-00
Chr04	irgsp1_rep	three_prime_UTR	26965504	26965559	.	+	.	Parent=Os04t0538850-00
Chr04	irgsp1_rep	three_prime_UTR	26965672	26965736	.	+	.	Parent=Os04t0538850-00
Chr04	irgsp1_rep	three_prime_UTR	26965832	26965905	.	+	.	Parent=Os04t0538850-00
Chr04	irgsp1_rep	three_prime_UTR	26965993	26966119	.	+	.	Parent=Os04t0538850-00
Chr04	irgsp1_rep	three_prime_UTR	26966220	26966319	.	+	.	Parent=Os04t0538850-00
Chr04	irgsp1_rep	three_prime_UTR	26966424	26966527	.	+	.	Parent=Os04t0538850-00
Chr04	irgsp1_rep	three_prime_UTR	26967014	26967316	.	+	.	Parent=Os04t0538850-00
Chr04	irgsp1_rep	mRNA	26975483	26976420	.	+	.	ID=Os04t0538900-00;Name=Os04t0538900-00;Locus_id=Os04g0538900;CGSNL Gene Symbol=GLYI5;CGSNL Gene Name=GLYOXALASE I-5;Oryzabase Gene Symbol Synonym(s)=OsGLYI5;Oryzabase Gene Name Synonym(s)=glyoxalase I-5;Note=Glyoxalase/bleomycin resistance protein/dioxygenase domain containing protein.;Transcript_evidence=AK333604 (DDBJ);ORF_evidence=NP_001053434.1 (RefSeq);Oryzabase=9355;TENOR=Os04t0538900-00;KEGG=Os04t0538900-00
Chr04	irgsp1_rep	CDS	26975483	26975802	.	+	0	Parent=Os04t0538900-00
Chr04	irgsp1_rep	CDS	26975968	26976088	.	+	1	Parent=Os04t0538900-00
Chr04	irgsp1_rep	CDS	26976180	26976416	.	+	0	Parent=Os04t0538900-00
Chr04	irgsp1_rep	three_prime_UTR	26976417	26976420	.	+	.	Parent=Os04t0538900-00
Chr04	irgsp1_rep	mRNA	26977442	26978662	.	+	.	ID=Os04t0539000-01;Name=Os04t0539000-01;Locus_id=Os04g0539000;Note=Protein of unknown function DUF2485 domain containing protein.;Transcript_evidence=AK105343 (DDBJ%2C Best hit);ORF_evidence=Q7FB12 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on NADH or NADPH%2C quinone or similar compound as acceptor (GO:0016655);InterPro=NAD(P)H-quinone oxidoreductase subunit M (IPR018922);NIAS_FLcDNA=001-118-H01;Expression=AK105343;TENOR=Os04t0539000-01;KEGG=Os04t0539000-01
Chr04	irgsp1_rep	five_prime_UTR	26977442	26977481	.	+	.	Parent=Os04t0539000-01
Chr04	irgsp1_rep	CDS	26977482	26977967	.	+	0	Parent=Os04t0539000-01
Chr04	irgsp1_rep	CDS	26978122	26978298	.	+	0	Parent=Os04t0539000-01
Chr04	irgsp1_rep	three_prime_UTR	26978299	26978662	.	+	.	Parent=Os04t0539000-01
Chr04	irgsp1_rep	mRNA	26978637	26982169	.	-	.	ID=Os04t0539100-01;Name=Os04t0539100-01;Locus_id=Os04g0539100;Note=Conserved hypothetical protein.;Transcript_evidence=AK069820 (DDBJ%2C Best hit);ORF_evidence=A2XVZ2 (UniProt);NIAS_FLcDNA=J023028L03;Expression=AK069820;TENOR=Os04t0539100-01;KEGG=Os04t0539100-01
Chr04	irgsp1_rep	five_prime_UTR	26982108	26982169	.	-	.	Parent=Os04t0539100-01
Chr04	irgsp1_rep	CDS	26981496	26982107	.	-	0	Parent=Os04t0539100-01
Chr04	irgsp1_rep	CDS	26980642	26980870	.	-	0	Parent=Os04t0539100-01
Chr04	irgsp1_rep	CDS	26979493	26979569	.	-	2	Parent=Os04t0539100-01
Chr04	irgsp1_rep	CDS	26978930	26979007	.	-	0	Parent=Os04t0539100-01
Chr04	irgsp1_rep	three_prime_UTR	26978637	26978929	.	-	.	Parent=Os04t0539100-01
Chr04	irgsp1_rep	mRNA	26981254	26982166	.	-	.	ID=Os04t0539100-02;Name=Os04t0539100-02;Locus_id=Os04g0539100;Note=Hypothetical conserved gene.;Transcript_evidence=AK100828 (DDBJ%2C Best hit);ORF_evidence=A2XVZ2 (UniProt);NIAS_FLcDNA=J023123A18;Expression=AK100828;TENOR=Os04t0539100-02;KEGG=Os04t0539100-02
Chr04	irgsp1_rep	five_prime_UTR	26982108	26982166	.	-	.	Parent=Os04t0539100-02
Chr04	irgsp1_rep	CDS	26981433	26982107	.	-	0	Parent=Os04t0539100-02
Chr04	irgsp1_rep	three_prime_UTR	26981254	26981432	.	-	.	Parent=Os04t0539100-02
Chr04	irgsp1_rep	mRNA	26988310	26989338	.	-	.	ID=Os04t0539300-00;Name=Os04t0539300-00;Locus_id=Os04g0539300;Note=Similar to Aldehyde 5-hydroxylase.;Transcript_evidence=AK248286 (DDBJ);ORF_evidence=Q9SWR1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);TENOR=Os04t0539300-00;KEGG=Os04t0539300-00
Chr04	irgsp1_rep	five_prime_UTR	26989338	26989338	.	-	.	Parent=Os04t0539300-00
Chr04	irgsp1_rep	CDS	26988955	26989337	.	-	0	Parent=Os04t0539300-00
Chr04	irgsp1_rep	CDS	26988345	26988741	.	-	1	Parent=Os04t0539300-00
Chr04	irgsp1_rep	three_prime_UTR	26988310	26988344	.	-	.	Parent=Os04t0539300-00
Chr04	irgsp1_rep	mRNA	27000796	27002738	.	+	.	ID=Os04t0539500-01;Name=Os04t0539500-01;Locus_id=Os04g0539500;CGSNL Gene Symbol=GATA5;CGSNL Gene Name=GATA TRANSCRIPTION FACTOR 5;Oryzabase Gene Symbol Synonym(s)=OsGATA5;Oryzabase Gene Name Synonym(s)=GATA transcription factor 5%2C GATA factor 5;Note=Similar to H0115B09.1 protein.;Transcript_evidence=AK060574 (DDBJ%2C Best hit),AK099144 (DDBJ%2C Best hit);ORF_evidence=Q01IQ1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Zinc finger%2C GATA-type (IPR000679),Zinc finger%2C NHR/GATA-type (IPR013088);NIAS_FLcDNA=001-023-D04,J023055K24;Oryzabase=20490;TENOR=Os04t0539500-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	27000796	27000935	.	+	.	Parent=Os04t0539500-01
Chr04	irgsp1_rep	CDS	27000936	27000968	.	+	0	Parent=Os04t0539500-01
Chr04	irgsp1_rep	CDS	27001167	27001469	.	+	0	Parent=Os04t0539500-01
Chr04	irgsp1_rep	CDS	27001593	27002429	.	+	0	Parent=Os04t0539500-01
Chr04	irgsp1_rep	three_prime_UTR	27002430	27002738	.	+	.	Parent=Os04t0539500-01
Chr04	irgsp1_rep	mRNA	27000912	27003034	.	+	.	ID=Os04t0539500-02;Name=Os04t0539500-02;Locus_id=Os04g0539500;CGSNL Gene Symbol=GATA5;CGSNL Gene Name=GATA TRANSCRIPTION FACTOR 5;Oryzabase Gene Symbol Synonym(s)=OsGATA5;Oryzabase Gene Name Synonym(s)=GATA transcription factor 5%2C GATA factor 5;Note=Similar to H0115B09.1 protein.;Transcript_evidence=AK119611 (DDBJ%2C Best hit);ORF_evidence=Q01IQ1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Zinc finger%2C GATA-type (IPR000679),Zinc finger%2C NHR/GATA-type (IPR013088);NIAS_FLcDNA=002-117-F12;Oryzabase=20490;TENOR=Os04t0539500-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	27000912	27001175	.	+	.	Parent=Os04t0539500-02
Chr04	irgsp1_rep	CDS	27001176	27001469	.	+	0	Parent=Os04t0539500-02
Chr04	irgsp1_rep	CDS	27001593	27002429	.	+	0	Parent=Os04t0539500-02
Chr04	irgsp1_rep	three_prime_UTR	27002430	27003034	.	+	.	Parent=Os04t0539500-02
Chr04	irgsp1_rep	mRNA	27001089	27002536	.	-	.	ID=Os04t0539601-00;Name=Os04t0539601-00;Locus_id=Os04g0539601;Note=Hypothetical gene.;Transcript_evidence=EU947136 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0539601-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	27001634	27002536	.	-	.	Parent=Os04t0539601-00
Chr04	irgsp1_rep	CDS	27001089	27001633	.	-	0	Parent=Os04t0539601-00
Chr04	irgsp1_rep	mRNA	27013503	27014196	.	+	.	ID=Os04t0539701-00;Name=Os04t0539701-00;Locus_id=Os04g0539701;Note=Conserved hypothetical protein.;Transcript_evidence=CT835025 (DDBJ%2C Best hit);ORF_evidence=NP_001060202.1 (RefSeq);TENOR=Os04t0539701-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	27013503	27013535	.	+	.	Parent=Os04t0539701-00
Chr04	irgsp1_rep	five_prime_UTR	27013751	27013808	.	+	.	Parent=Os04t0539701-00
Chr04	irgsp1_rep	five_prime_UTR	27013913	27013969	.	+	.	Parent=Os04t0539701-00
Chr04	irgsp1_rep	CDS	27013970	27014152	.	+	0	Parent=Os04t0539701-00
Chr04	irgsp1_rep	three_prime_UTR	27014153	27014196	.	+	.	Parent=Os04t0539701-00
Chr04	irgsp1_rep	mRNA	27015657	27019587	.	-	.	ID=Os04t0539800-01;Name=Os04t0539800-01;Locus_id=Os04g0539800;Note=Src homology-3 domain containing protein.;Transcript_evidence=AK240927 (DDBJ%2C Best hit);ORF_evidence=Q01IQ0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Src homology-3 domain (IPR001452);NIAS_FLcDNA=J065040F16;TENOR=Os04t0539800-01;KEGG=Os04t0539800-01
Chr04	irgsp1_rep	five_prime_UTR	27019332	27019587	.	-	.	Parent=Os04t0539800-01
Chr04	irgsp1_rep	CDS	27019278	27019331	.	-	0	Parent=Os04t0539800-01
Chr04	irgsp1_rep	CDS	27018216	27018335	.	-	0	Parent=Os04t0539800-01
Chr04	irgsp1_rep	CDS	27018058	27018127	.	-	0	Parent=Os04t0539800-01
Chr04	irgsp1_rep	CDS	27017793	27017944	.	-	2	Parent=Os04t0539800-01
Chr04	irgsp1_rep	CDS	27017512	27017613	.	-	0	Parent=Os04t0539800-01
Chr04	irgsp1_rep	CDS	27016710	27016910	.	-	0	Parent=Os04t0539800-01
Chr04	irgsp1_rep	CDS	27016545	27016607	.	-	0	Parent=Os04t0539800-01
Chr04	irgsp1_rep	CDS	27016264	27016419	.	-	0	Parent=Os04t0539800-01
Chr04	irgsp1_rep	CDS	27016084	27016158	.	-	0	Parent=Os04t0539800-01
Chr04	irgsp1_rep	CDS	27015825	27015941	.	-	0	Parent=Os04t0539800-01
Chr04	irgsp1_rep	three_prime_UTR	27015657	27015824	.	-	.	Parent=Os04t0539800-01
Chr04	irgsp1_rep	mRNA	27027267	27029421	.	+	.	ID=Os04t0540200-01;Name=Os04t0540200-01;Locus_id=Os04g0540200;RAP-DB Gene Symbol Synonym(s)=OsRIP1;RAP-DB Gene Name Synonym(s)=OsRE1-INTERACTING PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsBBX13%2C BBX13;Oryzabase Gene Name Synonym(s)=B-box-containing protein 13;Note=BBX transcription factor%2C Regulation of heading date;Transcript_evidence=AK061333;ORF_evidence=Q7XR92;GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=B-box-type zinc finger (IPR000315);NIAS_FLcDNA=006-303-A11;Manual Curation=August 7%2C 2020;Literature_PMID=32757315;Oryzabase=11644;Expression=AK061333;TENOR=Os04t0540200-01;KEGG=Os04t0540200-01;Subcellular location=nucleus (GO:0005634)
Chr04	irgsp1_rep	five_prime_UTR	27027267	27027463	.	+	.	Parent=Os04t0540200-01
Chr04	irgsp1_rep	CDS	27027464	27027664	.	+	0	Parent=Os04t0540200-01
Chr04	irgsp1_rep	CDS	27027758	27028114	.	+	0	Parent=Os04t0540200-01
Chr04	irgsp1_rep	CDS	27028957	27029151	.	+	0	Parent=Os04t0540200-01
Chr04	irgsp1_rep	three_prime_UTR	27029152	27029421	.	+	.	Parent=Os04t0540200-01
Chr04	irgsp1_rep	mRNA	27032815	27034819	.	+	.	ID=Os04t0540300-00;Name=Os04t0540300-00;Locus_id=Os04g0540300;CGSNL Gene Symbol=PCS10;CGSNL Gene Name=PHYTOCHELATIN SYNTHASE 10;Oryzabase Gene Symbol Synonym(s)=OsPCS10;Oryzabase Gene Name Synonym(s)=Phytochelatin synthase 10;Note=COBRA-like protein 7.;Transcript_evidence=Q7XR91 (UniProt);ORF_evidence=Q7XR91 (UniProt);InterPro=Glycosyl-phosphatidyl inositol-anchored%2C plant (IPR006918),COBRA-like (IPR017391);Oryzabase=23321;TENOR=Os04t0540300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	27032815	27032875	.	+	0	Parent=Os04t0540300-00
Chr04	irgsp1_rep	CDS	27033017	27033093	.	+	2	Parent=Os04t0540300-00
Chr04	irgsp1_rep	CDS	27033368	27033795	.	+	0	Parent=Os04t0540300-00
Chr04	irgsp1_rep	CDS	27033885	27034085	.	+	1	Parent=Os04t0540300-00
Chr04	irgsp1_rep	CDS	27034184	27034452	.	+	1	Parent=Os04t0540300-00
Chr04	irgsp1_rep	CDS	27034536	27034819	.	+	2	Parent=Os04t0540300-00
Chr04	irgsp1_rep	mRNA	27033014	27034736	.	-	.	ID=Os04t0540401-00;Name=Os04t0540401-00;Locus_id=Os04g0540401;Note=Hypothetical protein.;Transcript_evidence=tplb0046p06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0540401-00
Chr04	irgsp1_rep	five_prime_UTR	27034736	27034736	.	-	.	Parent=Os04t0540401-00
Chr04	irgsp1_rep	CDS	27034509	27034735	.	-	0	Parent=Os04t0540401-00
Chr04	irgsp1_rep	CDS	27034417	27034420	.	-	1	Parent=Os04t0540401-00
Chr04	irgsp1_rep	three_prime_UTR	27034218	27034416	.	-	.	Parent=Os04t0540401-00
Chr04	irgsp1_rep	three_prime_UTR	27033933	27034128	.	-	.	Parent=Os04t0540401-00
Chr04	irgsp1_rep	three_prime_UTR	27033386	27033842	.	-	.	Parent=Os04t0540401-00
Chr04	irgsp1_rep	three_prime_UTR	27033014	27033106	.	-	.	Parent=Os04t0540401-00
Chr04	irgsp1_rep	mRNA	27035636	27043531	.	-	.	ID=Os04t0540500-01;Name=Os04t0540500-01;Locus_id=Os04g0540500;Note=Hypothetical protein.;Transcript_evidence=AK120355 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013066J01;Expression=AK120355;TENOR=Os04t0540500-01;KEGG=Os04t0540500-01
Chr04	irgsp1_rep	five_prime_UTR	27043422	27043531	.	-	.	Parent=Os04t0540500-01
Chr04	irgsp1_rep	five_prime_UTR	27042143	27043044	.	-	.	Parent=Os04t0540500-01
Chr04	irgsp1_rep	CDS	27041870	27042142	.	-	0	Parent=Os04t0540500-01
Chr04	irgsp1_rep	three_prime_UTR	27039304	27041869	.	-	.	Parent=Os04t0540500-01
Chr04	irgsp1_rep	three_prime_UTR	27038589	27038618	.	-	.	Parent=Os04t0540500-01
Chr04	irgsp1_rep	three_prime_UTR	27037870	27037911	.	-	.	Parent=Os04t0540500-01
Chr04	irgsp1_rep	three_prime_UTR	27036121	27037166	.	-	.	Parent=Os04t0540500-01
Chr04	irgsp1_rep	three_prime_UTR	27035978	27036002	.	-	.	Parent=Os04t0540500-01
Chr04	irgsp1_rep	three_prime_UTR	27035636	27035858	.	-	.	Parent=Os04t0540500-01
Chr04	irgsp1_rep	mRNA	27043982	27048900	.	-	.	ID=Os04t0540600-01;Name=Os04t0540600-01;Locus_id=Os04g0540600;CGSNL Gene Symbol=ALDH3B1;CGSNL Gene Name=ALDEHYDE DEHYDROGENASE 3B1;Oryzabase Gene Symbol Synonym(s)=OsALDH3B1;Oryzabase Gene Name Synonym(s)=Aldehyde dehydrogenase 3B1;Note=Aldehyde dehydrogenase domain containing protein.;Transcript_evidence=AK071169 (DDBJ%2C Best hit);ORF_evidence=Q71LY7 (UniProt);GO=Biological Process: cellular aldehyde metabolic process (GO:0006081),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: aldehyde dehydrogenase [NAD(P)+] activity (GO:0004030),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620);InterPro=Aldehyde dehydrogenase NAD(P)-dependent (IPR012394),Aldehyde dehydrogenase domain (IPR015590),Aldehyde/histidinol dehydrogenase (IPR016161),Aldehyde dehydrogenase%2C N-terminal (IPR016162),Aldehyde dehydrogenase%2C C-terminal (IPR016163);NIAS_FLcDNA=J023081H03;Oryzabase=22111;Expression=AK071169;TENOR=Os04t0540600-01;KEGG=Os04t0540600-01
Chr04	irgsp1_rep	five_prime_UTR	27048627	27048900	.	-	.	Parent=Os04t0540600-01
Chr04	irgsp1_rep	CDS	27048372	27048626	.	-	0	Parent=Os04t0540600-01
Chr04	irgsp1_rep	CDS	27048178	27048247	.	-	0	Parent=Os04t0540600-01
Chr04	irgsp1_rep	CDS	27047981	27048076	.	-	2	Parent=Os04t0540600-01
Chr04	irgsp1_rep	CDS	27045689	27045895	.	-	2	Parent=Os04t0540600-01
Chr04	irgsp1_rep	CDS	27045353	27045585	.	-	2	Parent=Os04t0540600-01
Chr04	irgsp1_rep	CDS	27045082	27045242	.	-	0	Parent=Os04t0540600-01
Chr04	irgsp1_rep	CDS	27044907	27044997	.	-	1	Parent=Os04t0540600-01
Chr04	irgsp1_rep	CDS	27044671	27044820	.	-	0	Parent=Os04t0540600-01
Chr04	irgsp1_rep	CDS	27044262	27044498	.	-	0	Parent=Os04t0540600-01
Chr04	irgsp1_rep	three_prime_UTR	27043982	27044261	.	-	.	Parent=Os04t0540600-01
Chr04	irgsp1_rep	mRNA	27044262	27048538	.	+	.	ID=Os04t0540750-00;Name=Os04t0540750-00;Locus_id=Os04g0540750;Note=Hypothetical protein.;Transcript_evidence=tplb0048o11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0540750-00
Chr04	irgsp1_rep	five_prime_UTR	27044262	27044328	.	+	.	Parent=Os04t0540750-00
Chr04	irgsp1_rep	CDS	27044329	27044502	.	+	0	Parent=Os04t0540750-00
Chr04	irgsp1_rep	CDS	27044675	27044761	.	+	0	Parent=Os04t0540750-00
Chr04	irgsp1_rep	three_prime_UTR	27044762	27044837	.	+	.	Parent=Os04t0540750-00
Chr04	irgsp1_rep	three_prime_UTR	27044925	27044982	.	+	.	Parent=Os04t0540750-00
Chr04	irgsp1_rep	three_prime_UTR	27045065	27045222	.	+	.	Parent=Os04t0540750-00
Chr04	irgsp1_rep	three_prime_UTR	27045329	27045582	.	+	.	Parent=Os04t0540750-00
Chr04	irgsp1_rep	three_prime_UTR	27045684	27045917	.	+	.	Parent=Os04t0540750-00
Chr04	irgsp1_rep	three_prime_UTR	27048004	27048093	.	+	.	Parent=Os04t0540750-00
Chr04	irgsp1_rep	three_prime_UTR	27048319	27048538	.	+	.	Parent=Os04t0540750-00
Chr04	irgsp1_rep	mRNA	27058378	27059975	.	-	.	ID=Os04t0540900-01;Name=Os04t0540900-01;Locus_id=Os04g0540900;RAP-DB Gene Symbol Synonym(s)=STRK1;RAP-DB Gene Name Synonym(s)=salt tolerance receptor-like cytoplasmic kinase 1;CGSNL Gene Symbol=RLCK154;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 154;Oryzabase Gene Symbol Synonym(s)=OsRLCK154%2C STRK1%2C OsSTRK1;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 154%2C salt tolerance receptor-like cytoplasmic kinase 1;Note=Receptor-like cytoplasmic kinase%2C Salt tolerance%2C Oxidative stress tolerance;Transcript_evidence=AK066397;ORF_evidence=Q7XR88;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),Protein kinase domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J013061M19;Manual Curation=June 11%2C 2018;Literature_PMID=29581216;Oryzabase=18857;Expression=AK066397;TENOR=Os04t0540900-01;KEGG=Os04t0540900-01;Subcellular location=plasma membrane (GO:0005886)
Chr04	irgsp1_rep	five_prime_UTR	27059831	27059975	.	-	.	Parent=Os04t0540900-01
Chr04	irgsp1_rep	CDS	27059434	27059830	.	-	0	Parent=Os04t0540900-01
Chr04	irgsp1_rep	CDS	27058638	27059326	.	-	2	Parent=Os04t0540900-01
Chr04	irgsp1_rep	three_prime_UTR	27058378	27058637	.	-	.	Parent=Os04t0540900-01
Chr04	irgsp1_rep	mRNA	27078042	27080294	.	-	.	ID=Os04t0541100-01;Name=Os04t0541100-01;Locus_id=Os04g0541100;Oryzabase Gene Symbol Synonym(s)=OsGT-2%2C GT-2%2C OsMSL22%2C MSL22;Oryzabase Gene Name Synonym(s)=Myb/SANT-LIKE 22%2C GT-motif protein 2;Note=Similar to Gt-2.;Transcript_evidence=AK107139 (DDBJ%2C Best hit);ORF_evidence=Q7XR86 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-related (IPR012287),MYB-like (IPR017877);NIAS_FLcDNA=002-124-D01;Oryzabase=13661;Expression=AK107139;TENOR=Os04t0541100-01;KEGG=Os04t0541100-01
Chr04	irgsp1_rep	five_prime_UTR	27080128	27080294	.	-	.	Parent=Os04t0541100-01
Chr04	irgsp1_rep	five_prime_UTR	27080009	27080009	.	-	.	Parent=Os04t0541100-01
Chr04	irgsp1_rep	CDS	27078449	27080008	.	-	0	Parent=Os04t0541100-01
Chr04	irgsp1_rep	CDS	27078079	27078336	.	-	0	Parent=Os04t0541100-01
Chr04	irgsp1_rep	three_prime_UTR	27078042	27078078	.	-	.	Parent=Os04t0541100-01
Chr04	irgsp1_rep	mRNA	27078824	27079701	.	+	.	ID=Os04t0541234-00;Name=Os04t0541234-00;Locus_id=Os04g0541234;Note=Hypothetical protein.;Transcript_evidence=BT088333 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0541234-00
Chr04	irgsp1_rep	five_prime_UTR	27078824	27079017	.	+	.	Parent=Os04t0541234-00
Chr04	irgsp1_rep	five_prime_UTR	27079208	27079271	.	+	.	Parent=Os04t0541234-00
Chr04	irgsp1_rep	CDS	27079272	27079701	.	+	0	Parent=Os04t0541234-00
Chr04	irgsp1_rep	mRNA	27111204	27118461	.	+	.	ID=Os04t0541500-01;Name=Os04t0541500-01;Locus_id=Os04g0541500;RAP-DB Gene Symbol Synonym(s)=OsLCBK2;RAP-DB Gene Name Synonym(s)=long-chain base kinase 2;Oryzabase Gene Symbol Synonym(s)=OsLCBK2;Oryzabase Gene Name Synonym(s)=long-chain base kinase 2;Note=Long-chain base kinase%2C Regulation of disease resistance response and programmed cell death (PCD);Transcript_evidence=AK121106;ORF_evidence=Q7XN57;GO=Molecular Function: kinase activity (GO:0016301);InterPro=Diacylglycerol kinase%2C catalytic domain (IPR001206),NAD kinase/diacylglycerol kinase-like domain (IPR016064);NIAS_FLcDNA=J023072I23;Manual Curation=February 14%2C 2017;Literature_PMID=23054004;Oryzabase=12134;Expression=AK121106;TENOR=Os04t0541500-01;KEGG=Os04t0541500-01
Chr04	irgsp1_rep	five_prime_UTR	27111204	27111709	.	+	.	Parent=Os04t0541500-01
Chr04	irgsp1_rep	five_prime_UTR	27113023	27113140	.	+	.	Parent=Os04t0541500-01
Chr04	irgsp1_rep	CDS	27113141	27113548	.	+	0	Parent=Os04t0541500-01
Chr04	irgsp1_rep	CDS	27113646	27114002	.	+	0	Parent=Os04t0541500-01
Chr04	irgsp1_rep	CDS	27115115	27115208	.	+	0	Parent=Os04t0541500-01
Chr04	irgsp1_rep	CDS	27115304	27115341	.	+	2	Parent=Os04t0541500-01
Chr04	irgsp1_rep	CDS	27115426	27115572	.	+	0	Parent=Os04t0541500-01
Chr04	irgsp1_rep	CDS	27115740	27115839	.	+	0	Parent=Os04t0541500-01
Chr04	irgsp1_rep	CDS	27116574	27117526	.	+	2	Parent=Os04t0541500-01
Chr04	irgsp1_rep	CDS	27118085	27118234	.	+	0	Parent=Os04t0541500-01
Chr04	irgsp1_rep	three_prime_UTR	27118235	27118461	.	+	.	Parent=Os04t0541500-01
Chr04	irgsp1_rep	mRNA	27124404	27125428	.	+	.	ID=Os04t0541700-01;Name=Os04t0541700-01;Locus_id=Os04g0541700;CGSNL Gene Symbol=HOX22;CGSNL Gene Name=HOMEOBOX GENE 22;Oryzabase Gene Symbol Synonym(s)=Oshox22%2C OsHox22;Oryzabase Gene Name Synonym(s)=rice homeobox gene 22%2C Homeobox-leucine zipper protein HOX22%2C Homeodomain transcription factor HOX22%2C HD-ZIP protein HOX22;Note=Similar to Homeobox-leucine zipper protein HOX22.;Transcript_evidence=AK109177 (DDBJ%2C Best hit);ORF_evidence=Q7XUJ5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: transcription regulatory region sequence-specific DNA binding (GO:0000976),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Helix-turn-helix motif%2C lambda-like repressor (IPR000047),Homeobox (IPR001356),Leucine zipper%2C homeobox-associated (IPR003106),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Homeobox%2C conserved site (IPR017970);NIAS_FLcDNA=002-155-H12;Oryzabase=8459;TENOR=Os04t0541700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	27124404	27124433	.	+	.	Parent=Os04t0541700-01
Chr04	irgsp1_rep	CDS	27124434	27124658	.	+	0	Parent=Os04t0541700-01
Chr04	irgsp1_rep	CDS	27124776	27125120	.	+	0	Parent=Os04t0541700-01
Chr04	irgsp1_rep	three_prime_UTR	27125121	27125428	.	+	.	Parent=Os04t0541700-01
Chr04	irgsp1_rep	mRNA	27124166	27125512	.	+	.	ID=Os04t0541700-02;Name=Os04t0541700-02;Locus_id=Os04g0541700;RAP-DB Gene Symbol Synonym(s)=HOX22%2C Oshox22%2C OsHox22;RAP-DB Gene Name Synonym(s)=HOMEOBOX GENE 22%2C rice homeobox gene 22%2C Homeobox-leucine zipper protein HOX22%2C Homeodomain transcription factor HOX22%2C HD-ZIP protein HOX22;CGSNL Gene Symbol=HOX22;CGSNL Gene Name=HOMEOBOX GENE 22;Oryzabase Gene Symbol Synonym(s)=Oshox22%2C OsHox22;Oryzabase Gene Name Synonym(s)=rice homeobox gene 22%2C Homeobox-leucine zipper protein HOX22%2C Homeodomain transcription factor HOX22%2C HD-ZIP protein HOX22;Note=Homeodomain-leucine zipper (HD-Zip) protein%2C Transcription factor%2C ABA-mediated drought and salt tolerance;Transcript_evidence=Inferred from literature;ORF_evidence=Q7XUJ5;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox domain-like (IPR009057),Homeobox domain (IPR001356),Leucine zipper%2C homeobox-associated (IPR003106),Helix-turn-helix motif (IPR000047),Homeobox%2C conserved site (IPR017970);Manual Curation=February 10%2C 2017;Literature_PMID=23109182;Oryzabase=8459;Subcellular location=nucleus (GO:0005634)
Chr04	irgsp1_rep	five_prime_UTR	27124166	27124172	.	+	.	Parent=Os04t0541700-02
Chr04	irgsp1_rep	CDS	27124173	27124658	.	+	0	Parent=Os04t0541700-02
Chr04	irgsp1_rep	CDS	27124776	27125120	.	+	0	Parent=Os04t0541700-02
Chr04	irgsp1_rep	three_prime_UTR	27125121	27125512	.	+	.	Parent=Os04t0541700-02
Chr04	irgsp1_rep	mRNA	27133017	27135484	.	+	.	ID=Os04t0541900-00;Name=Os04t0541900-00;Locus_id=Os04g0541900;Note=Similar to cysteine-type endopeptidase/ ubiquitin thiolesterase.;Transcript_evidence=AK333701 (DDBJ);ORF_evidence=NP_001149592.1 (RefSeq);TENOR=Os04t0541900-00;KEGG=Os04t0541900-00
Chr04	irgsp1_rep	five_prime_UTR	27133017	27133033	.	+	.	Parent=Os04t0541900-00
Chr04	irgsp1_rep	CDS	27133034	27133423	.	+	0	Parent=Os04t0541900-00
Chr04	irgsp1_rep	CDS	27134142	27134297	.	+	0	Parent=Os04t0541900-00
Chr04	irgsp1_rep	CDS	27134915	27135126	.	+	0	Parent=Os04t0541900-00
Chr04	irgsp1_rep	CDS	27135220	27135418	.	+	1	Parent=Os04t0541900-00
Chr04	irgsp1_rep	three_prime_UTR	27135419	27135484	.	+	.	Parent=Os04t0541900-00
Chr04	irgsp1_rep	mRNA	27137079	27144180	.	+	.	ID=Os04t0542000-01;Name=Os04t0542000-01;Locus_id=Os04g0542000;RAP-DB Gene Symbol Synonym(s)=OsS40-5;RAP-DB Gene Name Synonym(s)=S40 protein 5;CGSNL Gene Symbol=S40-5;CGSNL Gene Name=S40 PROTEIN 5;Oryzabase Gene Symbol Synonym(s)=OsS40-5;Oryzabase Gene Name Synonym(s)=S40 protein 5;Note=A member of S40 gene family%2C Leaf senescence;Transcript_evidence=AK106878;ORF_evidence=Q7XUJ4;InterPro=Senescence regulator S40 (IPR007608);NIAS_FLcDNA=002-118-E05;Manual Curation=November 8%2C 2019;Literature_PMID=31046677;Oryzabase=22075;TENOR=Os04t0542000-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	27137079	27137226	.	+	.	Parent=Os04t0542000-01
Chr04	irgsp1_rep	CDS	27137227	27137856	.	+	0	Parent=Os04t0542000-01
Chr04	irgsp1_rep	three_prime_UTR	27137857	27137954	.	+	.	Parent=Os04t0542000-01
Chr04	irgsp1_rep	three_prime_UTR	27143051	27143772	.	+	.	Parent=Os04t0542000-01
Chr04	irgsp1_rep	three_prime_UTR	27143884	27144180	.	+	.	Parent=Os04t0542000-01
Chr04	irgsp1_rep	mRNA	27149973	27152079	.	+	.	ID=Os04t0542100-01;Name=Os04t0542100-01;Locus_id=Os04g0542100;Note=Similar to HAT family dimerisation domain containing protein.;Transcript_evidence=AK288170 (DDBJ%2C Best hit);ORF_evidence=Q53RM1 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein dimerization activity (GO:0046983);InterPro=HAT dimerisation (IPR008906),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J090003F03;TENOR=Os04t0542100-01;KEGG=Os04t0542100-01
Chr04	irgsp1_rep	five_prime_UTR	27149973	27149974	.	+	.	Parent=Os04t0542100-01
Chr04	irgsp1_rep	CDS	27149975	27150577	.	+	0	Parent=Os04t0542100-01
Chr04	irgsp1_rep	three_prime_UTR	27150578	27152079	.	+	.	Parent=Os04t0542100-01
Chr04	irgsp1_rep	mRNA	27154339	27158799	.	-	.	ID=Os04t0542200-01;Name=Os04t0542200-01;Locus_id=Os04g0542200;CGSNL Gene Symbol=YSL9;CGSNL Gene Name=YELLOW STRIP-LIKE GENE 9;Oryzabase Gene Symbol Synonym(s)=OsYSL9%2C OsYs13;Oryzabase Gene Name Synonym(s)=rice YSL (yellow stripe-like) gene 9%2C Probable metal-nicotianamine transporter YSL9%2C Protein YELLOW STRIPE LIKE 9%2C yellow stripe 1-like transporter 9;Note=Similar to H0501D11.7 protein.;Transcript_evidence=AK120923 (DDBJ%2C Best hit);ORF_evidence=Q01IJ7 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085);InterPro=Oligopeptide transporter OPT superfamily (IPR004813);NIAS_FLcDNA=J023035G16;Oryzabase=8367;TENOR=Os04t0542200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	27158798	27158799	.	-	.	Parent=Os04t0542200-01
Chr04	irgsp1_rep	CDS	27158696	27158797	.	-	0	Parent=Os04t0542200-01
Chr04	irgsp1_rep	CDS	27157916	27158328	.	-	0	Parent=Os04t0542200-01
Chr04	irgsp1_rep	CDS	27157648	27157819	.	-	1	Parent=Os04t0542200-01
Chr04	irgsp1_rep	CDS	27156447	27156544	.	-	0	Parent=Os04t0542200-01
Chr04	irgsp1_rep	CDS	27156225	27156359	.	-	1	Parent=Os04t0542200-01
Chr04	irgsp1_rep	CDS	27155921	27156110	.	-	1	Parent=Os04t0542200-01
Chr04	irgsp1_rep	CDS	27155725	27155839	.	-	0	Parent=Os04t0542200-01
Chr04	irgsp1_rep	CDS	27154726	27155648	.	-	2	Parent=Os04t0542200-01
Chr04	irgsp1_rep	three_prime_UTR	27154339	27154725	.	-	.	Parent=Os04t0542200-01
Chr04	irgsp1_rep	mRNA	27163250	27165117	.	+	.	ID=Os04t0542302-00;Name=Os04t0542302-00;Locus_id=Os04g0542302;Note=Similar to TCP-domain protein.;Transcript_evidence=AK331015 (DDBJ);ORF_evidence=NP_001151775.1 (RefSeq);InterPro=Transcription factor%2C TCP (IPR005333),Transcription factor TCP subgroup (IPR017887);TENOR=Os04t0542302-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	27163250	27163385	.	+	.	Parent=Os04t0542302-00
Chr04	irgsp1_rep	CDS	27163386	27163591	.	+	0	Parent=Os04t0542302-00
Chr04	irgsp1_rep	CDS	27164751	27165117	.	+	1	Parent=Os04t0542302-00
Chr04	irgsp1_rep	mRNA	27183978	27187746	.	-	.	ID=Os04t0542800-01;Name=Os04t0542800-01;Locus_id=Os04g0542800;RAP-DB Gene Symbol Synonym(s)=YSL16%2C OsYSL16%2C Os-YSL16%2C OsYs14;RAP-DB Gene Name Synonym(s)=YELLOW STRIP-LIKE GENE 16%2C rice YSL (yellow stripe-like) gene 16%2C Probable metal-nicotianamine transporter YSL16%2C Protein YELLOW STRIPE LIKE 16%2C yellow stripe 1-like transporter 16%2C Yellow stripe-like16%2C Yellow Stripe1-Like 16;CGSNL Gene Symbol=YSL16;CGSNL Gene Name=YELLOW STRIP-LIKE GENE 16;Oryzabase Gene Symbol Synonym(s)=OsYSL16%2C Os-YSL16%2C OsYs14;Oryzabase Gene Name Synonym(s)=rice YSL (yellow stripe-like) gene 16%2C Probable metal-nicotianamine transporter YSL16%2C Protein YELLOW STRIPE LIKE 16%2C yellow stripe 1-like transporter 16%2C Yellow stripe-like16%2C Yellow Stripe1-Like 16;Note=Transporter of the Copper-Nicotianamine Complex%2C Fe(III)-deoxymugineic acid transporter%2C Copper distribution%2C Allocation of iron;Transcript_evidence=AB673450 (Zhonghua11),AB190924,AK070304;ORF_evidence=Q7XN54;GO=Biological Process: transmembrane transport (GO:0055085);InterPro=Oligopeptide transporter%2C OPT superfamily (IPR004813);NIAS_FLcDNA=J023049B02;Manual Curation=June 20%2C 2014;Literature_PMID=23012434,22644443;Oryzabase=8357;TENOR=Os04t0542800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	27187681	27187746	.	-	.	Parent=Os04t0542800-01
Chr04	irgsp1_rep	five_prime_UTR	27187257	27187345	.	-	.	Parent=Os04t0542800-01
Chr04	irgsp1_rep	CDS	27186872	27187256	.	-	0	Parent=Os04t0542800-01
Chr04	irgsp1_rep	CDS	27186607	27186779	.	-	2	Parent=Os04t0542800-01
Chr04	irgsp1_rep	CDS	27186110	27186207	.	-	0	Parent=Os04t0542800-01
Chr04	irgsp1_rep	CDS	27185854	27185988	.	-	1	Parent=Os04t0542800-01
Chr04	irgsp1_rep	CDS	27185540	27185729	.	-	1	Parent=Os04t0542800-01
Chr04	irgsp1_rep	CDS	27185284	27185401	.	-	0	Parent=Os04t0542800-01
Chr04	irgsp1_rep	CDS	27184265	27185193	.	-	2	Parent=Os04t0542800-01
Chr04	irgsp1_rep	three_prime_UTR	27183978	27184264	.	-	.	Parent=Os04t0542800-01
Chr04	irgsp1_rep	mRNA	27191011	27194826	.	+	.	ID=Os04t0542900-01;Name=Os04t0542900-01;Locus_id=Os04g0542900;Note=Similar to endonuclease%2C polyU-specific.;Transcript_evidence=AK068610 (DDBJ%2C Best hit);ORF_evidence=NP_001150308.1 (RefSeq);GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Endoribonuclease XendoU (IPR018998);NIAS_FLcDNA=J013155A07;Expression=AK068610;TENOR=Os04t0542900-01;KEGG=Os04t0542900-01
Chr04	irgsp1_rep	five_prime_UTR	27191011	27191029	.	+	.	Parent=Os04t0542900-01
Chr04	irgsp1_rep	CDS	27191030	27191365	.	+	0	Parent=Os04t0542900-01
Chr04	irgsp1_rep	CDS	27191476	27191538	.	+	0	Parent=Os04t0542900-01
Chr04	irgsp1_rep	CDS	27191871	27191945	.	+	0	Parent=Os04t0542900-01
Chr04	irgsp1_rep	CDS	27192027	27192110	.	+	0	Parent=Os04t0542900-01
Chr04	irgsp1_rep	CDS	27192728	27192799	.	+	0	Parent=Os04t0542900-01
Chr04	irgsp1_rep	CDS	27193474	27194091	.	+	0	Parent=Os04t0542900-01
Chr04	irgsp1_rep	CDS	27194174	27194248	.	+	0	Parent=Os04t0542900-01
Chr04	irgsp1_rep	CDS	27194334	27194570	.	+	0	Parent=Os04t0542900-01
Chr04	irgsp1_rep	three_prime_UTR	27194571	27194826	.	+	.	Parent=Os04t0542900-01
Chr04	irgsp1_rep	mRNA	27194687	27196876	.	-	.	ID=Os04t0543000-01;Name=Os04t0543000-01;Locus_id=Os04g0543000;CGSNL Gene Symbol=RLCK155;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 155;Oryzabase Gene Symbol Synonym(s)=OsRLCK155;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 155;Note=Similar to Protein kinase.;Transcript_evidence=AK064119 (DDBJ%2C Best hit);ORF_evidence=A7UGD8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-102-B10;Oryzabase=18858;Expression=AK064119;TENOR=Os04t0543000-01;KEGG=Os04t0543000-01
Chr04	irgsp1_rep	five_prime_UTR	27196523	27196876	.	-	.	Parent=Os04t0543000-01
Chr04	irgsp1_rep	CDS	27196099	27196522	.	-	0	Parent=Os04t0543000-01
Chr04	irgsp1_rep	CDS	27195753	27196012	.	-	2	Parent=Os04t0543000-01
Chr04	irgsp1_rep	CDS	27195550	27195672	.	-	0	Parent=Os04t0543000-01
Chr04	irgsp1_rep	CDS	27194878	27195447	.	-	0	Parent=Os04t0543000-01
Chr04	irgsp1_rep	three_prime_UTR	27194687	27194877	.	-	.	Parent=Os04t0543000-01
Chr04	irgsp1_rep	mRNA	27195011	27195450	.	+	.	ID=Os04t0543033-00;Name=Os04t0543033-00;Locus_id=Os04g0543033;Note=Hypothetical protein.;Transcript_evidence=EU951577 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0543033-00
Chr04	irgsp1_rep	five_prime_UTR	27195011	27195012	.	+	.	Parent=Os04t0543033-00
Chr04	irgsp1_rep	CDS	27195013	27195450	.	+	0	Parent=Os04t0543033-00
Chr04	irgsp1_rep	mRNA	27198225	27199027	.	+	.	ID=Os04t0543100-01;Name=Os04t0543100-01;Locus_id=Os04g0543100;Note=Hypothetical gene.;Transcript_evidence=AK062379 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-102-B07;Expression=AK062379;TENOR=Os04t0543100-01;KEGG=Os04t0543100-01
Chr04	irgsp1_rep	five_prime_UTR	27198225	27198226	.	+	.	Parent=Os04t0543100-01
Chr04	irgsp1_rep	CDS	27198227	27198550	.	+	0	Parent=Os04t0543100-01
Chr04	irgsp1_rep	three_prime_UTR	27198551	27199027	.	+	.	Parent=Os04t0543100-01
Chr04	irgsp1_rep	mRNA	27200275	27204752	.	+	.	ID=Os04t0543200-01;Name=Os04t0543200-01;Locus_id=Os04g0543200;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK102135 (DDBJ%2C Best hit),AK101961 (DDBJ%2C Best hit);ORF_evidence=NP_001105099.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033085H02,J033076A11;TENOR=Os04t0543200-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	27200275	27200380	.	+	.	Parent=Os04t0543200-01
Chr04	irgsp1_rep	five_prime_UTR	27200475	27200520	.	+	.	Parent=Os04t0543200-01
Chr04	irgsp1_rep	CDS	27200521	27200761	.	+	0	Parent=Os04t0543200-01
Chr04	irgsp1_rep	CDS	27201277	27201800	.	+	2	Parent=Os04t0543200-01
Chr04	irgsp1_rep	CDS	27201883	27201972	.	+	0	Parent=Os04t0543200-01
Chr04	irgsp1_rep	CDS	27202048	27202287	.	+	0	Parent=Os04t0543200-01
Chr04	irgsp1_rep	CDS	27202374	27202595	.	+	0	Parent=Os04t0543200-01
Chr04	irgsp1_rep	CDS	27202697	27203006	.	+	0	Parent=Os04t0543200-01
Chr04	irgsp1_rep	CDS	27203101	27203420	.	+	2	Parent=Os04t0543200-01
Chr04	irgsp1_rep	CDS	27203509	27203618	.	+	0	Parent=Os04t0543200-01
Chr04	irgsp1_rep	CDS	27203706	27203800	.	+	1	Parent=Os04t0543200-01
Chr04	irgsp1_rep	CDS	27203904	27203980	.	+	2	Parent=Os04t0543200-01
Chr04	irgsp1_rep	CDS	27204093	27204188	.	+	0	Parent=Os04t0543200-01
Chr04	irgsp1_rep	three_prime_UTR	27204189	27204189	.	+	.	Parent=Os04t0543200-01
Chr04	irgsp1_rep	three_prime_UTR	27204396	27204752	.	+	.	Parent=Os04t0543200-01
Chr04	irgsp1_rep	mRNA	27210846	27211225	.	+	.	ID=Os04t0543500-00;Name=Os04t0543500-00;Locus_id=Os04g0543500;Note=Hypothetical conserved gene.;Transcript_evidence=CT836502 (DDBJ%2C Best hit);ORF_evidence=NP_001053454.2 (RefSeq);TENOR=Os04t0543500-00;KEGG=Os04t0543500-00
Chr04	irgsp1_rep	CDS	27210846	27211016	.	+	0	Parent=Os04t0543500-00
Chr04	irgsp1_rep	three_prime_UTR	27211017	27211225	.	+	.	Parent=Os04t0543500-00
Chr04	irgsp1_rep	mRNA	27214115	27218840	.	-	.	ID=Os04t0543600-01;Name=Os04t0543600-01;Locus_id=Os04g0543600;Oryzabase Gene Symbol Synonym(s)=OsCAT5;Oryzabase Gene Name Synonym(s)=cationic amino acid transporter 5;Note=Amino acid/polyamine transporter I family protein.;Transcript_evidence=AK064289 (DDBJ%2C Best hit);ORF_evidence=XP_002326482.1 (RefSeq);GO=Biological Process: amino acid transmembrane transport (GO:0003333),Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: amino acid transmembrane transporter activity (GO:0015171);InterPro=Amino acid/polyamine transporter I (IPR002293),Amino acid permease domain (IPR004841),Cationic amino acid transporter (IPR015606);NIAS_FLcDNA=002-105-H04;Oryzabase=18539;Expression=AK064289;TENOR=Os04t0543600-01;KEGG=Os04t0543600-01
Chr04	irgsp1_rep	five_prime_UTR	27218596	27218840	.	-	.	Parent=Os04t0543600-01
Chr04	irgsp1_rep	CDS	27218586	27218595	.	-	0	Parent=Os04t0543600-01
Chr04	irgsp1_rep	CDS	27216942	27217164	.	-	2	Parent=Os04t0543600-01
Chr04	irgsp1_rep	CDS	27216142	27216472	.	-	1	Parent=Os04t0543600-01
Chr04	irgsp1_rep	CDS	27215822	27216053	.	-	0	Parent=Os04t0543600-01
Chr04	irgsp1_rep	CDS	27214351	27214889	.	-	2	Parent=Os04t0543600-01
Chr04	irgsp1_rep	three_prime_UTR	27214115	27214350	.	-	.	Parent=Os04t0543600-01
Chr04	irgsp1_rep	mRNA	27214415	27217574	.	+	.	ID=Os04t0543650-00;Name=Os04t0543650-00;Locus_id=Os04g0543650;Note=Hypothetical protein.;Transcript_evidence=EU957609 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0543650-00
Chr04	irgsp1_rep	five_prime_UTR	27214415	27214879	.	+	.	Parent=Os04t0543650-00
Chr04	irgsp1_rep	five_prime_UTR	27215818	27215829	.	+	.	Parent=Os04t0543650-00
Chr04	irgsp1_rep	CDS	27215830	27216069	.	+	0	Parent=Os04t0543650-00
Chr04	irgsp1_rep	CDS	27216157	27216213	.	+	0	Parent=Os04t0543650-00
Chr04	irgsp1_rep	three_prime_UTR	27216214	27216469	.	+	.	Parent=Os04t0543650-00
Chr04	irgsp1_rep	three_prime_UTR	27216948	27217185	.	+	.	Parent=Os04t0543650-00
Chr04	irgsp1_rep	three_prime_UTR	27217371	27217574	.	+	.	Parent=Os04t0543650-00
Chr04	irgsp1_rep	mRNA	27222677	27226323	.	+	.	ID=Os04t0543700-01;Name=Os04t0543700-01;Locus_id=Os04g0543700;Oryzabase Gene Symbol Synonym(s)=OsSub42%2C SUB42%2C OsSP2%2C OS-MSP;Oryzabase Gene Name Synonym(s)=Serine protease 2%2C Subtilisin 42%2C SUBTILISIN 42;Note=Similar to Serine proteinase (Fragment).;Transcript_evidence=AK106823 (DDBJ%2C Best hit);ORF_evidence=Q68Q08 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Cellular Component: cell wall (GO:0005618),Cellular Component: membrane (GO:0016020),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8A%2C DUF1034 C-terminal (IPR010435),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C  Asp-active site (IPR023827),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);NIAS_FLcDNA=002-116-E05;Oryzabase=10418;Expression=AK106823;TENOR=Os04t0543700-01;KEGG=Os04t0543700-01
Chr04	irgsp1_rep	five_prime_UTR	27222677	27222677	.	+	.	Parent=Os04t0543700-01
Chr04	irgsp1_rep	CDS	27222678	27222844	.	+	0	Parent=Os04t0543700-01
Chr04	irgsp1_rep	CDS	27222923	27223073	.	+	1	Parent=Os04t0543700-01
Chr04	irgsp1_rep	CDS	27223151	27223545	.	+	0	Parent=Os04t0543700-01
Chr04	irgsp1_rep	CDS	27223661	27223756	.	+	1	Parent=Os04t0543700-01
Chr04	irgsp1_rep	CDS	27223843	27223912	.	+	1	Parent=Os04t0543700-01
Chr04	irgsp1_rep	CDS	27223987	27224269	.	+	0	Parent=Os04t0543700-01
Chr04	irgsp1_rep	CDS	27224545	27224870	.	+	2	Parent=Os04t0543700-01
Chr04	irgsp1_rep	CDS	27224982	27225941	.	+	0	Parent=Os04t0543700-01
Chr04	irgsp1_rep	three_prime_UTR	27225942	27226323	.	+	.	Parent=Os04t0543700-01
Chr04	irgsp1_rep	mRNA	27233362	27236577	.	+	.	ID=Os04t0543900-01;Name=Os04t0543900-01;Locus_id=Os04g0543900;CGSNL Gene Symbol=GDH2;CGSNL Gene Name=GLUTAMATE DEHYDROGENASE 2;Oryzabase Gene Symbol Synonym(s)=OsGDH2;Oryzabase Gene Name Synonym(s)=glutamate dehydrogenase 2;Note=Similar to glutamic dehydrogenase1.;Transcript_evidence=AK065301 (DDBJ%2C Best hit);ORF_evidence=Q33E23 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Glutamate/phenylalanine/leucine/valine dehydrogenase%2C dimerisation domain (IPR006097);NIAS_FLcDNA=J013002N22;Oryzabase=9308;TENOR=Os04t0543900-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	27233362	27233912	.	+	.	Parent=Os04t0543900-01
Chr04	irgsp1_rep	CDS	27233913	27234020	.	+	0	Parent=Os04t0543900-01
Chr04	irgsp1_rep	CDS	27234128	27234259	.	+	0	Parent=Os04t0543900-01
Chr04	irgsp1_rep	three_prime_UTR	27234260	27235905	.	+	.	Parent=Os04t0543900-01
Chr04	irgsp1_rep	three_prime_UTR	27235980	27236054	.	+	.	Parent=Os04t0543900-01
Chr04	irgsp1_rep	three_prime_UTR	27236142	27236577	.	+	.	Parent=Os04t0543900-01
Chr04	irgsp1_rep	mRNA	27233575	27238105	.	+	.	ID=Os04t0543900-02;Name=Os04t0543900-02;Locus_id=Os04g0543900;CGSNL Gene Symbol=GDH2;CGSNL Gene Name=GLUTAMATE DEHYDROGENASE 2;Oryzabase Gene Symbol Synonym(s)=OsGDH2;Oryzabase Gene Name Synonym(s)=glutamate dehydrogenase 2;Note=Similar to Glutamate dehydrogenase 2.;Transcript_evidence=AK063467 (DDBJ%2C Best hit);ORF_evidence=Q33E23 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-NH2 group of donors%2C NAD or NADP as acceptor (GO:0016639);InterPro=Glutamate/phenylalanine/leucine/valine dehydrogenase (IPR006095),Glutamate/phenylalanine/leucine/valine dehydrogenase%2C C-terminal (IPR006096),Glutamate/phenylalanine/leucine/valine dehydrogenase%2C dimerisation domain (IPR006097),Glutamate dehydrogenase (IPR014362),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-115-H11;Oryzabase=9308;TENOR=Os04t0543900-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	27233575	27233912	.	+	.	Parent=Os04t0543900-02
Chr04	irgsp1_rep	CDS	27233913	27234020	.	+	0	Parent=Os04t0543900-02
Chr04	irgsp1_rep	CDS	27234128	27234241	.	+	0	Parent=Os04t0543900-02
Chr04	irgsp1_rep	CDS	27235684	27235905	.	+	0	Parent=Os04t0543900-02
Chr04	irgsp1_rep	CDS	27235980	27236054	.	+	0	Parent=Os04t0543900-02
Chr04	irgsp1_rep	CDS	27236142	27236258	.	+	0	Parent=Os04t0543900-02
Chr04	irgsp1_rep	CDS	27236718	27236968	.	+	0	Parent=Os04t0543900-02
Chr04	irgsp1_rep	CDS	27237259	27237334	.	+	1	Parent=Os04t0543900-02
Chr04	irgsp1_rep	CDS	27237435	27237521	.	+	0	Parent=Os04t0543900-02
Chr04	irgsp1_rep	CDS	27237610	27237795	.	+	0	Parent=Os04t0543900-02
Chr04	irgsp1_rep	three_prime_UTR	27237796	27238105	.	+	.	Parent=Os04t0543900-02
Chr04	irgsp1_rep	mRNA	27241150	27241709	.	+	.	ID=Os04t0544000-00;Name=Os04t0544000-00;Locus_id=Os04g0544000;Note=Hypothetical conserved gene.;Transcript_evidence=EU972251 (DDBJ);ORF_evidence=Q7XN05 (UniProt);TENOR=Os04t0544000-00;KEGG=Os04t0544000-00
Chr04	irgsp1_rep	CDS	27241150	27241596	.	+	0	Parent=Os04t0544000-00
Chr04	irgsp1_rep	three_prime_UTR	27241597	27241709	.	+	.	Parent=Os04t0544000-00
Chr04	irgsp1_rep	mRNA	27244082	27246792	.	-	.	ID=Os04t0544100-01;Name=Os04t0544100-01;Locus_id=Os04g0544100;Oryzabase Gene Symbol Synonym(s)=OsSET20%2C SDG703%2C OsSUVH5;Oryzabase Gene Name Synonym(s)=SET protein 20%2C SUVH Histone Methyltransferase 5;Note=Similar to SET domain-containing protein SET104.;Transcript_evidence=AK066297 (DDBJ%2C Best hit);ORF_evidence=NP_001105193.1 (RefSeq);GO=Biological Process: histone lysine methylation (GO:0034968),Cellular Component: nucleus (GO:0005634),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: histone-lysine N-methyltransferase activity (GO:0018024),Molecular Function: histone binding (GO:0042393);InterPro=SET domain (IPR001214),SRA-YDG (IPR003105),Post-SET domain (IPR003616),Pre-SET domain (IPR007728);NIAS_FLcDNA=J013059A21;Oryzabase=13385;Expression=AK066297;TENOR=Os04t0544100-01;KEGG=Os04t0544100-01
Chr04	irgsp1_rep	five_prime_UTR	27246662	27246792	.	-	.	Parent=Os04t0544100-01
Chr04	irgsp1_rep	CDS	27244136	27246661	.	-	0	Parent=Os04t0544100-01
Chr04	irgsp1_rep	three_prime_UTR	27244082	27244135	.	-	.	Parent=Os04t0544100-01
Chr04	irgsp1_rep	mRNA	27251810	27254199	.	-	.	ID=Os04t0544200-01;Name=Os04t0544200-01;Locus_id=Os04g0544200;RAP-DB Gene Symbol Synonym(s)=OsCYCP4%3B4;RAP-DB Gene Name Synonym(s)=P-type cyclin 4%3B4;Oryzabase Gene Symbol Synonym(s)=OsCYCP4%3B4;Oryzabase Gene Name Synonym(s)=P-type cyclin 4%3B4;Note=P-type cyclin%2C PHO80 homologous protein%2C Coordination of phosphate starvation signaling and cell cycle progression under phosphate starvation stress;Transcript_evidence=AK287844;ORF_evidence=Q7XN03;GO=Biological Process: regulation of cyclin-dependent protein serine/threonine kinase activity (GO:0000079),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin-like superfamily (IPR036915),Cyclin PHO80-like (IPR013922),Cyclin P/U (IPR012389);NIAS_FLcDNA=J065194L04;Manual Curation=November 13%2C 2019;Literature_PMID=31697021,25315105;Oryzabase=18624;TENOR=Os04t0544200-01;KEGG=Os04t0544200-01
Chr04	irgsp1_rep	five_prime_UTR	27254098	27254199	.	-	.	Parent=Os04t0544200-01
Chr04	irgsp1_rep	CDS	27253736	27254097	.	-	0	Parent=Os04t0544200-01
Chr04	irgsp1_rep	CDS	27252099	27252375	.	-	1	Parent=Os04t0544200-01
Chr04	irgsp1_rep	three_prime_UTR	27251810	27252098	.	-	.	Parent=Os04t0544200-01
Chr04	irgsp1_rep	mRNA	27256445	27258940	.	-	.	ID=Os04t0544400-00;Name=Os04t0544400-00;Locus_id=Os04g0544400;Note=Hypothetical conserved gene.;Transcript_evidence=AK371099 (DDBJ);ORF_evidence=Q7XN02 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os04t0544400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	27258911	27258940	.	-	.	Parent=Os04t0544400-00
Chr04	irgsp1_rep	CDS	27258527	27258910	.	-	0	Parent=Os04t0544400-00
Chr04	irgsp1_rep	CDS	27256509	27257660	.	-	0	Parent=Os04t0544400-00
Chr04	irgsp1_rep	three_prime_UTR	27256445	27256508	.	-	.	Parent=Os04t0544400-00
Chr04	irgsp1_rep	mRNA	27260363	27264477	.	-	.	ID=Os04t0544500-01;Name=Os04t0544500-01;Locus_id=Os04g0544500;Oryzabase Gene Symbol Synonym(s)=OsGATA21%2C GATA21%2C OsGATA21a%2C OsGATA21b%2C DLN117%2C OSDLN117;Oryzabase Gene Name Synonym(s)=GATA transcription factor 21%2C GATA factor 21%2C DLN repressor 117%2C DLN motif protein 117;Note=Similar to Similarities with spP40209 Saccharomyces cerevisiae YMR136w GAT2.;Transcript_evidence=AK070729 (DDBJ%2C Best hit);ORF_evidence=NP_001149109.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Zinc finger%2C GATA-type (IPR000679),Zinc finger%2C NHR/GATA-type (IPR013088);NIAS_FLcDNA=J023063M07;Oryzabase=22166;Expression=AK070729;TENOR=Os04t0544500-01;KEGG=Os04t0544500-01
Chr04	irgsp1_rep	five_prime_UTR	27264104	27264477	.	-	.	Parent=Os04t0544500-01
Chr04	irgsp1_rep	CDS	27264064	27264103	.	-	0	Parent=Os04t0544500-01
Chr04	irgsp1_rep	CDS	27262721	27263077	.	-	2	Parent=Os04t0544500-01
Chr04	irgsp1_rep	CDS	27261644	27262064	.	-	2	Parent=Os04t0544500-01
Chr04	irgsp1_rep	CDS	27261462	27261534	.	-	1	Parent=Os04t0544500-01
Chr04	irgsp1_rep	CDS	27261218	27261329	.	-	0	Parent=Os04t0544500-01
Chr04	irgsp1_rep	CDS	27260710	27261059	.	-	2	Parent=Os04t0544500-01
Chr04	irgsp1_rep	three_prime_UTR	27260363	27260709	.	-	.	Parent=Os04t0544500-01
Chr04	irgsp1_rep	mRNA	27260381	27264413	.	+	.	ID=Os04t0544700-00;Name=Os04t0544700-00;Locus_id=Os04g0544700;Note=Hypothetical protein.;Transcript_evidence=tplb0054e15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0544700-00
Chr04	irgsp1_rep	five_prime_UTR	27260381	27260893	.	+	.	Parent=Os04t0544700-00
Chr04	irgsp1_rep	CDS	27260894	27261046	.	+	0	Parent=Os04t0544700-00
Chr04	irgsp1_rep	CDS	27261210	27261290	.	+	0	Parent=Os04t0544700-00
Chr04	irgsp1_rep	three_prime_UTR	27261291	27261331	.	+	.	Parent=Os04t0544700-00
Chr04	irgsp1_rep	three_prime_UTR	27261571	27262055	.	+	.	Parent=Os04t0544700-00
Chr04	irgsp1_rep	three_prime_UTR	27262712	27263073	.	+	.	Parent=Os04t0544700-00
Chr04	irgsp1_rep	three_prime_UTR	27264059	27264413	.	+	.	Parent=Os04t0544700-00
Chr04	irgsp1_rep	mRNA	27275331	27282735	.	-	.	ID=Os04t0544900-01;Name=Os04t0544900-01;Locus_id=Os04g0544900;Note=Alg9-like mannosyltransferase family protein.;Transcript_evidence=AK069661 (DDBJ%2C Best hit);ORF_evidence=Q01J26 (UniProt);GO=Biological Process: GPI anchor biosynthetic process (GO:0006506),Cellular Component: intrinsic to endoplasmic reticulum membrane (GO:0031227),Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=GPI mannosyltransferase (IPR005599);NIAS_FLcDNA=J023028O16;Expression=AK069661;TENOR=Os04t0544900-01;KEGG=Os04t0544900-01 (EC:2.4.1.130)
Chr04	irgsp1_rep	five_prime_UTR	27282661	27282735	.	-	.	Parent=Os04t0544900-01
Chr04	irgsp1_rep	CDS	27282612	27282660	.	-	0	Parent=Os04t0544900-01
Chr04	irgsp1_rep	CDS	27282410	27282495	.	-	2	Parent=Os04t0544900-01
Chr04	irgsp1_rep	CDS	27281584	27281625	.	-	0	Parent=Os04t0544900-01
Chr04	irgsp1_rep	CDS	27281465	27281510	.	-	0	Parent=Os04t0544900-01
Chr04	irgsp1_rep	CDS	27281127	27281213	.	-	2	Parent=Os04t0544900-01
Chr04	irgsp1_rep	CDS	27280984	27281039	.	-	2	Parent=Os04t0544900-01
Chr04	irgsp1_rep	CDS	27280236	27280353	.	-	0	Parent=Os04t0544900-01
Chr04	irgsp1_rep	CDS	27280042	27280100	.	-	2	Parent=Os04t0544900-01
Chr04	irgsp1_rep	CDS	27279571	27279642	.	-	0	Parent=Os04t0544900-01
Chr04	irgsp1_rep	CDS	27278948	27279011	.	-	0	Parent=Os04t0544900-01
Chr04	irgsp1_rep	CDS	27278746	27278849	.	-	2	Parent=Os04t0544900-01
Chr04	irgsp1_rep	CDS	27278125	27278196	.	-	0	Parent=Os04t0544900-01
Chr04	irgsp1_rep	CDS	27277691	27277777	.	-	0	Parent=Os04t0544900-01
Chr04	irgsp1_rep	CDS	27277544	27277611	.	-	0	Parent=Os04t0544900-01
Chr04	irgsp1_rep	CDS	27277138	27277206	.	-	1	Parent=Os04t0544900-01
Chr04	irgsp1_rep	CDS	27276951	27277033	.	-	1	Parent=Os04t0544900-01
Chr04	irgsp1_rep	CDS	27276641	27276731	.	-	2	Parent=Os04t0544900-01
Chr04	irgsp1_rep	CDS	27276495	27276560	.	-	1	Parent=Os04t0544900-01
Chr04	irgsp1_rep	CDS	27275960	27276053	.	-	1	Parent=Os04t0544900-01
Chr04	irgsp1_rep	CDS	27275713	27275793	.	-	0	Parent=Os04t0544900-01
Chr04	irgsp1_rep	three_prime_UTR	27275331	27275712	.	-	.	Parent=Os04t0544900-01
Chr04	irgsp1_rep	mRNA	27284275	27290982	.	-	.	ID=Os04t0545000-01;Name=Os04t0545000-01;Locus_id=Os04g0545000;RAP-DB Gene Symbol Synonym(s)=OsWRKY36%2C SGSD3;RAP-DB Gene Name Synonym(s)=WRKY GENE 36%2C small grain and semi-dwarf 3;CGSNL Gene Symbol=WRKY36;CGSNL Gene Name=WRKY GENE 36;Oryzabase Gene Symbol Synonym(s)=OsWRKY36;Oryzabase Gene Name Synonym(s)=Rice WRKY gene36;Note=Transcriptional repressor for secondary cell wall formation%2C Repression of rice lignification%2C Negative regulation of plant height and grain size%2C Inhibition of gibberellin signaling;Transcript_evidence=AK073695;ORF_evidence=Q0JBA9;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA-binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=WRKY domain superfamily (IPR036576),WRKY domain (IPR003657);NIAS_FLcDNA=J033063J05;Manual Curation=August 19%2C 2020;Literature_PMID=32808190,32539998,Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6549;Expression=AK073695;TENOR=Os04t0545000-01;KEGG=Os04t0545000-01;Subcellular location=nucleus (GO:0005634)
Chr04	irgsp1_rep	five_prime_UTR	27290781	27290982	.	-	.	Parent=Os04t0545000-01
Chr04	irgsp1_rep	CDS	27290454	27290780	.	-	0	Parent=Os04t0545000-01
Chr04	irgsp1_rep	CDS	27290271	27290356	.	-	0	Parent=Os04t0545000-01
Chr04	irgsp1_rep	CDS	27290002	27290157	.	-	1	Parent=Os04t0545000-01
Chr04	irgsp1_rep	CDS	27284508	27284691	.	-	1	Parent=Os04t0545000-01
Chr04	irgsp1_rep	three_prime_UTR	27284275	27284507	.	-	.	Parent=Os04t0545000-01
Chr04	irgsp1_rep	mRNA	27300831	27317008	.	-	.	ID=Os04t0545100-01;Name=Os04t0545100-01;Locus_id=Os04g0545100;Oryzabase Gene Symbol Synonym(s)=OsSTA128;Note=Engulfment and cell motility%2C ELM domain containing protein.;Transcript_evidence=AK071451 (DDBJ%2C Best hit);ORF_evidence=Q01J24 (UniProt);GO=Biological Process: phagocytosis (GO:0006909),Cellular Component: cytoskeleton (GO:0005856);InterPro=Engulfment/cell motility%2C ELMO (IPR006816);NIAS_FLcDNA=J023098H22;Oryzabase=19417;Expression=AK071451;TENOR=Os04t0545100-01;KEGG=Os04t0545100-01
Chr04	irgsp1_rep	five_prime_UTR	27316881	27317008	.	-	.	Parent=Os04t0545100-01
Chr04	irgsp1_rep	CDS	27316796	27316880	.	-	0	Parent=Os04t0545100-01
Chr04	irgsp1_rep	CDS	27316549	27316658	.	-	2	Parent=Os04t0545100-01
Chr04	irgsp1_rep	CDS	27316122	27316190	.	-	0	Parent=Os04t0545100-01
Chr04	irgsp1_rep	CDS	27315615	27315730	.	-	0	Parent=Os04t0545100-01
Chr04	irgsp1_rep	CDS	27315462	27315516	.	-	1	Parent=Os04t0545100-01
Chr04	irgsp1_rep	CDS	27315049	27315169	.	-	0	Parent=Os04t0545100-01
Chr04	irgsp1_rep	CDS	27314893	27314940	.	-	2	Parent=Os04t0545100-01
Chr04	irgsp1_rep	CDS	27301410	27301504	.	-	2	Parent=Os04t0545100-01
Chr04	irgsp1_rep	CDS	27301214	27301315	.	-	0	Parent=Os04t0545100-01
Chr04	irgsp1_rep	three_prime_UTR	27300831	27301213	.	-	.	Parent=Os04t0545100-01
Chr04	irgsp1_rep	mRNA	27318763	27323515	.	-	.	ID=Os04t0545200-00;Name=Os04t0545200-00;Locus_id=Os04g0545200;Note=Similar to OSIGBa0101C23.4 protein.;Transcript_evidence=AK360700 (DDBJ);ORF_evidence=Q01J23 (UniProt);InterPro=Domain of unknown function DUF3598 (IPR022017);TENOR=Os04t0545200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	27323410	27323515	.	-	.	Parent=Os04t0545200-00
Chr04	irgsp1_rep	CDS	27323056	27323409	.	-	0	Parent=Os04t0545200-00
Chr04	irgsp1_rep	CDS	27322188	27322586	.	-	0	Parent=Os04t0545200-00
Chr04	irgsp1_rep	CDS	27321146	27321238	.	-	0	Parent=Os04t0545200-00
Chr04	irgsp1_rep	CDS	27320291	27320430	.	-	0	Parent=Os04t0545200-00
Chr04	irgsp1_rep	CDS	27318845	27319283	.	-	1	Parent=Os04t0545200-00
Chr04	irgsp1_rep	three_prime_UTR	27318763	27318844	.	-	.	Parent=Os04t0545200-00
Chr04	irgsp1_rep	mRNA	27326577	27327802	.	+	.	ID=Os04t0545250-01;Name=Os04t0545250-01;Locus_id=Os04g0545250;CGSNL Gene Symbol=AGP5;CGSNL Gene Name=ARABINOGALACTAN PROTEIN 5;Oryzabase Gene Symbol Synonym(s)=OsAGP5;Oryzabase Gene Name Synonym(s)=Arabinogalactan protein 5;Note=Hypothetical protein.;Transcript_evidence=AK241990 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J075099D14;Oryzabase=11298;TENOR=Os04t0545250-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	27326577	27327473	.	+	0	Parent=Os04t0545250-01
Chr04	irgsp1_rep	three_prime_UTR	27327474	27327802	.	+	.	Parent=Os04t0545250-01
Chr04	irgsp1_rep	mRNA	27326622	27327503	.	-	.	ID=Os04t0545300-00;Name=Os04t0545300-00;Locus_id=Os04g0545300;Note=Cupredoxin domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01J22 (UniProt);TENOR=Os04t0545300-00;KEGG=Os04t0545300-00
Chr04	irgsp1_rep	CDS	27326622	27327503	.	-	0	Parent=Os04t0545300-00
Chr04	irgsp1_rep	mRNA	27328757	27329428	.	-	.	ID=Os04t0545400-00;Name=Os04t0545400-00;Locus_id=Os04g0545400;CGSNL Gene Symbol=UCL14;CGSNL Gene Name=UCLACYANIN-LIKE PROTEIN 14;Oryzabase Gene Symbol Synonym(s)=OsUCL14;Oryzabase Gene Name Synonym(s)=uclacyanin-like protein 14;Note=Cupredoxin domain containing protein.;Transcript_evidence=EU961255 (DDBJ);ORF_evidence=B6T8E0 (UniProt);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);Oryzabase=9763;TENOR=Os04t0545400-00;KEGG=Os04t0545400-00
Chr04	irgsp1_rep	CDS	27329257	27329428	.	-	0	Parent=Os04t0545400-00
Chr04	irgsp1_rep	CDS	27328770	27329155	.	-	2	Parent=Os04t0545400-00
Chr04	irgsp1_rep	three_prime_UTR	27328757	27328769	.	-	.	Parent=Os04t0545400-00
Chr04	irgsp1_rep	mRNA	27333724	27335203	.	-	.	ID=Os04t0545600-01;Name=Os04t0545600-01;Locus_id=Os04g0545600;CGSNL Gene Symbol=UCL15;CGSNL Gene Name=UCLACYANIN-LIKE PROTEIN 15;Oryzabase Gene Symbol Synonym(s)=OsUCL15;Oryzabase Gene Name Synonym(s)=uclacyanin-like protein 15;Note=Similar to Uclacyanin 3-like protein.;Transcript_evidence=AK119259 (DDBJ%2C Best hit);ORF_evidence=Q01J20 (UniProt);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);NIAS_FLcDNA=001-125-H05;Oryzabase=9764;Expression=AK119259;TENOR=Os04t0545600-01;KEGG=Os04t0545600-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	27335153	27335203	.	-	.	Parent=Os04t0545600-01
Chr04	irgsp1_rep	CDS	27334957	27335152	.	-	0	Parent=Os04t0545600-01
Chr04	irgsp1_rep	CDS	27333924	27334303	.	-	2	Parent=Os04t0545600-01
Chr04	irgsp1_rep	three_prime_UTR	27333724	27333923	.	-	.	Parent=Os04t0545600-01
Chr04	irgsp1_rep	mRNA	27336576	27337862	.	-	.	ID=Os04t0545700-00;Name=Os04t0545700-00;Locus_id=Os04g0545700;Note=Transferase family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01J19 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os04t0545700-00;KEGG=Os04t0545700-00
Chr04	irgsp1_rep	CDS	27337371	27337862	.	-	0	Parent=Os04t0545700-00
Chr04	irgsp1_rep	CDS	27336576	27337235	.	-	0	Parent=Os04t0545700-00
Chr04	irgsp1_rep	mRNA	27345290	27347008	.	+	.	ID=Os04t0546100-01;Name=Os04t0546100-01;Locus_id=Os04g0546100;Note=Similar to OSIGBa0101C23.10 protein.;Transcript_evidence=AK122016 (DDBJ%2C Best hit);ORF_evidence=Q01J17 (UniProt);InterPro=Plant organelle RNA recognition domain (IPR021099);NIAS_FLcDNA=J033111L04;TENOR=Os04t0546100-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	27345290	27345402	.	+	.	Parent=Os04t0546100-01
Chr04	irgsp1_rep	CDS	27345403	27346623	.	+	0	Parent=Os04t0546100-01
Chr04	irgsp1_rep	three_prime_UTR	27346624	27347008	.	+	.	Parent=Os04t0546100-01
Chr04	irgsp1_rep	mRNA	27353820	27357710	.	+	.	ID=Os04t0546300-01;Name=Os04t0546300-01;Locus_id=Os04g0546300;Note=Similar to GMPK2%3DPROTEIN kinase.;Transcript_evidence=AK102945 (DDBJ%2C Best hit);ORF_evidence=Q01J16 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033114L22;TENOR=Os04t0546300-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	27353820	27354051	.	+	.	Parent=Os04t0546300-01
Chr04	irgsp1_rep	five_prime_UTR	27354304	27354375	.	+	.	Parent=Os04t0546300-01
Chr04	irgsp1_rep	five_prime_UTR	27354452	27354618	.	+	.	Parent=Os04t0546300-01
Chr04	irgsp1_rep	CDS	27354619	27355835	.	+	0	Parent=Os04t0546300-01
Chr04	irgsp1_rep	CDS	27356463	27357333	.	+	1	Parent=Os04t0546300-01
Chr04	irgsp1_rep	three_prime_UTR	27357334	27357710	.	+	.	Parent=Os04t0546300-01
Chr04	irgsp1_rep	mRNA	27358354	27361185	.	+	.	ID=Os04t0546400-01;Name=Os04t0546400-01;Locus_id=Os04g0546400;CGSNL Gene Symbol=UCH4;CGSNL Gene Name=UBIQUITIN C-TERMINAL HYDROLASE 4;Oryzabase Gene Symbol Synonym(s)=OsUCH4;Oryzabase Gene Name Synonym(s)=ubiquitin C-terminal hydrolase 4;Note=Similar to ubiquitin carboxyl-terminal hydrolase isozyme L3.;Transcript_evidence=AK059677 (DDBJ%2C Best hit);ORF_evidence=NP_001149173.1 (RefSeq);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Cellular Component: intracellular (GO:0005622),Molecular Function: ubiquitin thiolesterase activity (GO:0004221);InterPro=Peptidase C12%2C ubiquitin carboxyl-terminal hydrolase 1 (IPR001578);NIAS_FLcDNA=001-031-G12;Oryzabase=22862;TENOR=Os04t0546400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	27358354	27358494	.	+	0	Parent=Os04t0546400-01
Chr04	irgsp1_rep	CDS	27358584	27358634	.	+	0	Parent=Os04t0546400-01
Chr04	irgsp1_rep	CDS	27359795	27359853	.	+	0	Parent=Os04t0546400-01
Chr04	irgsp1_rep	CDS	27359949	27360023	.	+	1	Parent=Os04t0546400-01
Chr04	irgsp1_rep	CDS	27360486	27360501	.	+	1	Parent=Os04t0546400-01
Chr04	irgsp1_rep	three_prime_UTR	27360502	27360534	.	+	.	Parent=Os04t0546400-01
Chr04	irgsp1_rep	three_prime_UTR	27360641	27360717	.	+	.	Parent=Os04t0546400-01
Chr04	irgsp1_rep	three_prime_UTR	27360977	27361185	.	+	.	Parent=Os04t0546400-01
Chr04	irgsp1_rep	mRNA	27362093	27362951	.	-	.	ID=Os04t0546500-01;Name=Os04t0546500-01;Locus_id=Os04g0546500;Oryzabase Gene Symbol Synonym(s)=ole16%2C OsEnS-72;Oryzabase Gene Name Synonym(s)=16 kDa oleosin%2C endosperm-specific gene 72;Note=Similar to Oleosin.;Transcript_evidence=AK103379 (DDBJ%2C Best hit);ORF_evidence=Q01J14 (UniProt);GO=Cellular Component: monolayer-surrounded lipid storage body (GO:0012511),Cellular Component: integral to membrane (GO:0016021);InterPro=Oleosin (IPR000136);NIAS_FLcDNA=J033127E10;Oryzabase=13765;TENOR=Os04t0546500-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	27362842	27362951	.	-	.	Parent=Os04t0546500-01
Chr04	irgsp1_rep	CDS	27362395	27362841	.	-	0	Parent=Os04t0546500-01
Chr04	irgsp1_rep	three_prime_UTR	27362093	27362394	.	-	.	Parent=Os04t0546500-01
Chr04	irgsp1_rep	mRNA	27362091	27362872	.	-	.	ID=Os04t0546500-02;Name=Os04t0546500-02;Locus_id=Os04g0546500;Oryzabase Gene Symbol Synonym(s)=ole16%2C OsEnS-72;Oryzabase Gene Name Synonym(s)=16 kDa oleosin%2C endosperm-specific gene 72;Note=Similar to Oleosin.;Transcript_evidence=AK105470 (DDBJ%2C Best hit);ORF_evidence=Q01J14 (UniProt);GO=Cellular Component: monolayer-surrounded lipid storage body (GO:0012511),Cellular Component: integral to membrane (GO:0016021);InterPro=Oleosin (IPR000136);NIAS_FLcDNA=001-126-A08;Oryzabase=13765;TENOR=Os04t0546500-02;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	27362842	27362872	.	-	.	Parent=Os04t0546500-02
Chr04	irgsp1_rep	CDS	27362395	27362841	.	-	0	Parent=Os04t0546500-02
Chr04	irgsp1_rep	three_prime_UTR	27362091	27362394	.	-	.	Parent=Os04t0546500-02
Chr04	irgsp1_rep	mRNA	27371324	27372855	.	-	.	ID=Os04t0546800-01;Name=Os04t0546800-01;Locus_id=Os04g0546800;CGSNL Gene Symbol=ERF93;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 93;Oryzabase Gene Symbol Synonym(s)=OsERF1%2C ERF1%2C OsERF#093%2C OsERF093%2C OsERF93%2C AP2/EREBP#168%2C AP2/EREBP168;Oryzabase Gene Name Synonym(s)=ethylene response factor 1%2C ethylene responsive factor 1%2C ethylene response factor 93%2C APETALA2/ethylene-responsive element binding protein 168;Note=Pathogenesis-related transcriptional factor and ERF domain containing protein.;Transcript_evidence=AK243188 (DDBJ%2C Best hit);ORF_evidence=Q01J12 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J100039E18;Oryzabase=9386;TENOR=Os04t0546800-01;KEGG=Os04t0546800-01
Chr04	irgsp1_rep	five_prime_UTR	27372778	27372855	.	-	.	Parent=Os04t0546800-01
Chr04	irgsp1_rep	CDS	27371821	27372777	.	-	0	Parent=Os04t0546800-01
Chr04	irgsp1_rep	three_prime_UTR	27371324	27371820	.	-	.	Parent=Os04t0546800-01
Chr04	irgsp1_rep	mRNA	27372750	27373629	.	+	.	ID=Os04t0546900-01;Name=Os04t0546900-01;Locus_id=Os04g0546900;Note=Hypothetical gene.;Transcript_evidence=AK062775 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-107-A08;Expression=AK062775;TENOR=Os04t0546900-01;KEGG=Os04t0546900-01
Chr04	irgsp1_rep	five_prime_UTR	27372750	27372760	.	+	.	Parent=Os04t0546900-01
Chr04	irgsp1_rep	CDS	27372761	27372994	.	+	0	Parent=Os04t0546900-01
Chr04	irgsp1_rep	three_prime_UTR	27372995	27373629	.	+	.	Parent=Os04t0546900-01
Chr04	irgsp1_rep	mRNA	27408986	27410384	.	+	.	ID=Os04t0547600-01;Name=Os04t0547600-01;Locus_id=Os04g0547600;CGSNL Gene Symbol=ERF94;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 94;Oryzabase Gene Symbol Synonym(s)=OsERF#094%2C OsERF094%2C OsERF94%2C AP2/EREBP#039%2C AP2/EREBP39;Oryzabase Gene Name Synonym(s)=ethylene response factor 94%2C APETALA2/ethylene-responsive element binding protein 39;Note=Pathogenesis-related transcriptional factor and ERF domain containing protein.;Transcript_evidence=AK109141 (DDBJ%2C Best hit);ORF_evidence=Q7X7J2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=002-155-E09;Oryzabase=10596;Expression=AK109141;TENOR=Os04t0547600-01;KEGG=Os04t0547600-01
Chr04	irgsp1_rep	five_prime_UTR	27408986	27409121	.	+	.	Parent=Os04t0547600-01
Chr04	irgsp1_rep	CDS	27409122	27410108	.	+	0	Parent=Os04t0547600-01
Chr04	irgsp1_rep	three_prime_UTR	27410109	27410384	.	+	.	Parent=Os04t0547600-01
Chr04	irgsp1_rep	mRNA	27416019	27421357	.	-	.	ID=Os04t0547800-00;Name=Os04t0547800-00;Locus_id=Os04g0547800;Note=Conserved hypothetical protein.;Transcript_evidence=BT041875 (DDBJ);ORF_evidence=Q6YUV2 (UniProt);TENOR=Os04t0547800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	27421169	27421357	.	-	0	Parent=Os04t0547800-00
Chr04	irgsp1_rep	CDS	27420642	27421054	.	-	0	Parent=Os04t0547800-00
Chr04	irgsp1_rep	CDS	27416019	27416388	.	-	1	Parent=Os04t0547800-00
Chr04	irgsp1_rep	mRNA	27423442	27426169	.	+	.	ID=Os04t0547900-01;Name=Os04t0547900-01;Locus_id=Os04g0547900;Note=Anti-sense to fibroblast growth factor protein GFG family protein.;Transcript_evidence=AK065996 (DDBJ%2C Best hit),AK060404 (DDBJ%2C Best hit);ORF_evidence=Q01I29 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=NUDIX hydrolase domain (IPR000086),Nudix hydrolase 6-like (IPR003293),NUDIX hydrolase domain-like (IPR015797),NUDIX hydrolase%2C conserved site (IPR020084);NIAS_FLcDNA=J013047F16,001-010-C09;TENOR=Os04t0547900-01
Chr04	irgsp1_rep	five_prime_UTR	27423442	27423603	.	+	.	Parent=Os04t0547900-01
Chr04	irgsp1_rep	CDS	27423604	27423712	.	+	0	Parent=Os04t0547900-01
Chr04	irgsp1_rep	CDS	27423795	27424105	.	+	2	Parent=Os04t0547900-01
Chr04	irgsp1_rep	CDS	27424290	27424355	.	+	0	Parent=Os04t0547900-01
Chr04	irgsp1_rep	CDS	27424550	27424690	.	+	0	Parent=Os04t0547900-01
Chr04	irgsp1_rep	CDS	27424781	27424858	.	+	0	Parent=Os04t0547900-01
Chr04	irgsp1_rep	CDS	27424934	27424984	.	+	0	Parent=Os04t0547900-01
Chr04	irgsp1_rep	CDS	27425075	27425109	.	+	0	Parent=Os04t0547900-01
Chr04	irgsp1_rep	CDS	27425228	27425336	.	+	1	Parent=Os04t0547900-01
Chr04	irgsp1_rep	CDS	27425481	27425687	.	+	0	Parent=Os04t0547900-01
Chr04	irgsp1_rep	three_prime_UTR	27425688	27426169	.	+	.	Parent=Os04t0547900-01
Chr04	irgsp1_rep	mRNA	27426756	27429823	.	+	.	ID=Os04t0548000-01;Name=Os04t0548000-01;Locus_id=Os04g0548000;Note=Protein of unknown function DUF862%2C eukaryotic domain containing protein.;Transcript_evidence=AK073099 (DDBJ%2C Best hit),AK104979 (DDBJ%2C Best hit);ORF_evidence=Q01I28 (UniProt);InterPro=Domain of unknown function DUF862%2C eukaryotic (IPR008580);NIAS_FLcDNA=J033015I19,001-124-C04;Expression=AK073099;TENOR=Os04t0548000-01;KEGG=Os04t0548000-01
Chr04	irgsp1_rep	five_prime_UTR	27426756	27426928	.	+	.	Parent=Os04t0548000-01
Chr04	irgsp1_rep	CDS	27426929	27427064	.	+	0	Parent=Os04t0548000-01
Chr04	irgsp1_rep	CDS	27428007	27428294	.	+	2	Parent=Os04t0548000-01
Chr04	irgsp1_rep	CDS	27428385	27428465	.	+	2	Parent=Os04t0548000-01
Chr04	irgsp1_rep	CDS	27429335	27429453	.	+	2	Parent=Os04t0548000-01
Chr04	irgsp1_rep	three_prime_UTR	27429454	27429823	.	+	.	Parent=Os04t0548000-01
Chr04	irgsp1_rep	mRNA	27431357	27434622	.	-	.	ID=Os04t0548100-01;Name=Os04t0548100-01;Locus_id=Os04g0548100;Note=Similar to OSIGBa0106P14.3 protein.;Transcript_evidence=AK065659 (DDBJ%2C Best hit);ORF_evidence=Q01I27 (UniProt);NIAS_FLcDNA=J013042N16;TENOR=Os04t0548100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	27434507	27434622	.	-	.	Parent=Os04t0548100-01
Chr04	irgsp1_rep	CDS	27434177	27434506	.	-	0	Parent=Os04t0548100-01
Chr04	irgsp1_rep	CDS	27434065	27434112	.	-	0	Parent=Os04t0548100-01
Chr04	irgsp1_rep	three_prime_UTR	27431357	27434064	.	-	.	Parent=Os04t0548100-01
Chr04	irgsp1_rep	mRNA	27457152	27460087	.	+	.	ID=Os04t0548300-01;Name=Os04t0548300-01;Locus_id=Os04g0548300;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=AK064433 (DDBJ%2C Best hit);ORF_evidence=Q01I26 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),BP28%2C C-terminal (IPR012954),Armadillo-type fold (IPR016024);NIAS_FLcDNA=002-110-D05;Expression=AK064433;TENOR=Os04t0548300-01;KEGG=Os04t0548300-01
Chr04	irgsp1_rep	five_prime_UTR	27457152	27457153	.	+	.	Parent=Os04t0548300-01
Chr04	irgsp1_rep	CDS	27457154	27457188	.	+	0	Parent=Os04t0548300-01
Chr04	irgsp1_rep	CDS	27458025	27458271	.	+	1	Parent=Os04t0548300-01
Chr04	irgsp1_rep	CDS	27458629	27458799	.	+	0	Parent=Os04t0548300-01
Chr04	irgsp1_rep	CDS	27459044	27459274	.	+	0	Parent=Os04t0548300-01
Chr04	irgsp1_rep	three_prime_UTR	27459275	27460087	.	+	.	Parent=Os04t0548300-01
Chr04	irgsp1_rep	mRNA	27458071	27459412	.	+	.	ID=Os04t0548300-02;Name=Os04t0548300-02;Locus_id=Os04g0548300;Note=Similar to OSIGBa0106P14.4 protein.;Transcript_evidence=AK063594 (DDBJ%2C Best hit);ORF_evidence=Q01I26 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),BP28%2C C-terminal (IPR012954);NIAS_FLcDNA=001-118-B03;Expression=AK063594;TENOR=Os04t0548300-02;KEGG=Os04t0548300-02
Chr04	irgsp1_rep	CDS	27458071	27458271	.	+	0	Parent=Os04t0548300-02
Chr04	irgsp1_rep	CDS	27458629	27458799	.	+	0	Parent=Os04t0548300-02
Chr04	irgsp1_rep	CDS	27459044	27459274	.	+	0	Parent=Os04t0548300-02
Chr04	irgsp1_rep	three_prime_UTR	27459275	27459412	.	+	.	Parent=Os04t0548300-02
Chr04	irgsp1_rep	mRNA	27460855	27461595	.	-	.	ID=Os04t0548400-01;Name=Os04t0548400-01;Locus_id=Os04g0548400;CGSNL Gene Symbol=RLCK156;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 156;Oryzabase Gene Symbol Synonym(s)=OsRLCK156;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 156;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK059366 (DDBJ%2C Best hit);ORF_evidence=Q01I25 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-026-E07;Oryzabase=18859;Expression=AK059366;TENOR=Os04t0548400-01;KEGG=Os04t0548400-01
Chr04	irgsp1_rep	five_prime_UTR	27461595	27461595	.	-	.	Parent=Os04t0548400-01
Chr04	irgsp1_rep	CDS	27461142	27461594	.	-	0	Parent=Os04t0548400-01
Chr04	irgsp1_rep	three_prime_UTR	27460855	27461141	.	-	.	Parent=Os04t0548400-01
Chr04	irgsp1_rep	mRNA	27461142	27467245	.	+	.	ID=Os04t0548450-00;Name=Os04t0548450-00;Locus_id=Os04g0548450;Note=Non-protein coding transcript.;Transcript_evidence=tplb0052f20 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os04t0548450-00
Chr04	irgsp1_rep	exon	27461142	27461722	.	+	.	Parent=Os04t0548450-00
Chr04	irgsp1_rep	exon	27462955	27463454	.	+	.	Parent=Os04t0548450-00
Chr04	irgsp1_rep	exon	27467112	27467245	.	+	.	Parent=Os04t0548450-00
Chr04	irgsp1_rep	mRNA	27466424	27467214	.	-	.	ID=Os04t0548500-01;Name=Os04t0548500-01;Locus_id=Os04g0548500;Note=Similar to OSIGBa0106P14.6 protein.;Transcript_evidence=AK063565 (DDBJ%2C Best hit);ORF_evidence=Q01I24 (UniProt);NIAS_FLcDNA=001-117-F08;Expression=AK063565;TENOR=Os04t0548500-01;KEGG=Os04t0548500-01
Chr04	irgsp1_rep	CDS	27466841	27467214	.	-	0	Parent=Os04t0548500-01
Chr04	irgsp1_rep	CDS	27466677	27466827	.	-	1	Parent=Os04t0548500-01
Chr04	irgsp1_rep	three_prime_UTR	27466424	27466676	.	-	.	Parent=Os04t0548500-01
Chr04	irgsp1_rep	mRNA	27478192	27479717	.	-	.	ID=Os04t0548700-01;Name=Os04t0548700-01;Locus_id=Os04g0548700;CGSNL Gene Symbol=HOX17;CGSNL Gene Name=HOMEOBOX GENE 17;Oryzabase Gene Symbol Synonym(s)=Oshox17%2C OsHox17;Oryzabase Gene Name Synonym(s)=rice homeobox gene 17%2C Homeobox-leucine zipper protein HOX17%2C Homeodomain transcription factor HOX17%2C HD-ZIP protein HOX17;Note=Homeodomain-like containing protein.;Transcript_evidence=AK122006 (DDBJ%2C Best hit);ORF_evidence=Q0JB92 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: transcription regulatory region sequence-specific DNA binding (GO:0000976),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Helix-turn-helix motif%2C lambda-like repressor (IPR000047),Homeobox (IPR001356),Leucine zipper%2C homeobox-associated (IPR003106),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Homeobox%2C conserved site (IPR017970);NIAS_FLcDNA=J033110O17;Oryzabase=8453;Expression=AK122006;TENOR=Os04t0548700-01;KEGG=Os04t0548700-01
Chr04	irgsp1_rep	five_prime_UTR	27479580	27479717	.	-	.	Parent=Os04t0548700-01
Chr04	irgsp1_rep	CDS	27479477	27479579	.	-	0	Parent=Os04t0548700-01
Chr04	irgsp1_rep	CDS	27479143	27479357	.	-	2	Parent=Os04t0548700-01
Chr04	irgsp1_rep	CDS	27478897	27478976	.	-	0	Parent=Os04t0548700-01
Chr04	irgsp1_rep	CDS	27478385	27478730	.	-	1	Parent=Os04t0548700-01
Chr04	irgsp1_rep	three_prime_UTR	27478192	27478384	.	-	.	Parent=Os04t0548700-01
Chr04	irgsp1_rep	mRNA	27494477	27497968	.	-	.	ID=Os04t0549300-01;Name=Os04t0549300-01;Locus_id=Os04g0549300;Note=Similar to GA protein (Fragment).;Transcript_evidence=AK063296 (DDBJ%2C Best hit);ORF_evidence=Q01I22 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Peptidase T2%2C asparaginase 2 (IPR000246);NIAS_FLcDNA=001-113-E10;Expression=AK063296;TENOR=Os04t0549300-01;KEGG=Os04t0549300-01 (EC:3.5.1.26)
Chr04	irgsp1_rep	five_prime_UTR	27497961	27497968	.	-	.	Parent=Os04t0549300-01
Chr04	irgsp1_rep	CDS	27497886	27497960	.	-	0	Parent=Os04t0549300-01
Chr04	irgsp1_rep	CDS	27497593	27497788	.	-	0	Parent=Os04t0549300-01
Chr04	irgsp1_rep	CDS	27496845	27496909	.	-	2	Parent=Os04t0549300-01
Chr04	irgsp1_rep	CDS	27496288	27496731	.	-	0	Parent=Os04t0549300-01
Chr04	irgsp1_rep	CDS	27496153	27496211	.	-	0	Parent=Os04t0549300-01
Chr04	irgsp1_rep	CDS	27495553	27495657	.	-	1	Parent=Os04t0549300-01
Chr04	irgsp1_rep	CDS	27494767	27494986	.	-	1	Parent=Os04t0549300-01
Chr04	irgsp1_rep	three_prime_UTR	27494477	27494766	.	-	.	Parent=Os04t0549300-01
Chr04	irgsp1_rep	mRNA	27494725	27497944	.	+	.	ID=Os04t0549350-00;Name=Os04t0549350-00;Locus_id=Os04g0549350;Note=Hypothetical protein.;Transcript_evidence=tplb0053n16 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0549350-00
Chr04	irgsp1_rep	five_prime_UTR	27494725	27495116	.	+	.	Parent=Os04t0549350-00
Chr04	irgsp1_rep	five_prime_UTR	27495517	27496851	.	+	.	Parent=Os04t0549350-00
Chr04	irgsp1_rep	CDS	27496852	27496909	.	+	0	Parent=Os04t0549350-00
Chr04	irgsp1_rep	CDS	27497593	27497791	.	+	2	Parent=Os04t0549350-00
Chr04	irgsp1_rep	CDS	27497896	27497899	.	+	1	Parent=Os04t0549350-00
Chr04	irgsp1_rep	three_prime_UTR	27497900	27497944	.	+	.	Parent=Os04t0549350-00
Chr04	irgsp1_rep	mRNA	27498110	27498744	.	+	.	ID=Os04t0549400-01;Name=Os04t0549400-01;Locus_id=Os04g0549400;Note=Conserved hypothetical protein.;Transcript_evidence=AK111097 (DDBJ%2C Best hit);ORF_evidence=B9FGG3 (UniProt);NIAS_FLcDNA=002-175-G09;Expression=AK111097;TENOR=Os04t0549400-01;KEGG=Os04t0549400-01
Chr04	irgsp1_rep	five_prime_UTR	27498110	27498166	.	+	.	Parent=Os04t0549400-01
Chr04	irgsp1_rep	CDS	27498167	27498382	.	+	0	Parent=Os04t0549400-01
Chr04	irgsp1_rep	CDS	27498481	27498570	.	+	0	Parent=Os04t0549400-01
Chr04	irgsp1_rep	three_prime_UTR	27498571	27498744	.	+	.	Parent=Os04t0549400-01
Chr04	irgsp1_rep	mRNA	27505498	27509994	.	+	.	ID=Os04t0549600-01;Name=Os04t0549600-01;Locus_id=Os04g0549600;RAP-DB Gene Symbol Synonym(s)=OsDjA6;RAP-DB Gene Name Synonym(s)=DnaJ domain protein A6;Oryzabase Gene Symbol Synonym(s)=OsDjA6%2C DjA6;Oryzabase Gene Name Synonym(s)=DnaJ domain protein A6%2C DnaJ protein RNB8;Note=Chaperone DnaJ protein%2C Negative regulation of rice innate immunity%2C Basal resistance to Magnaporthe oryzae;Transcript_evidence=AK101956;ORF_evidence=Q0JB88;GO=Biological Process: protein folding (GO:0006457),Biological Process: response to heat (GO:0009408),Molecular Function: ATP binding (GO:0005524),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Chaperone DnaJ (IPR012724),DnaJ domain (IPR001623),HSP40/DnaJ peptide-binding (IPR008971),Chaperone DnaJ%2C C-terminal (IPR002939),Heat shock protein DnaJ%2C cysteine-rich domain (IPR001305),DnaJ domain%2C conserved site (IPR018253);NIAS_FLcDNA=J033075M11;Manual Curation=April 20%2C 2017;Literature_PMID=28220688;Oryzabase=12143;Expression=AK101956;TENOR=Os04t0549600-01;KEGG=Os04t0549600-01;Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737)
Chr04	irgsp1_rep	five_prime_UTR	27505498	27505581	.	+	.	Parent=Os04t0549600-01
Chr04	irgsp1_rep	five_prime_UTR	27506407	27506439	.	+	.	Parent=Os04t0549600-01
Chr04	irgsp1_rep	CDS	27506440	27506586	.	+	0	Parent=Os04t0549600-01
Chr04	irgsp1_rep	CDS	27506667	27506832	.	+	0	Parent=Os04t0549600-01
Chr04	irgsp1_rep	CDS	27506943	27507081	.	+	2	Parent=Os04t0549600-01
Chr04	irgsp1_rep	CDS	27508576	27508709	.	+	1	Parent=Os04t0549600-01
Chr04	irgsp1_rep	CDS	27508809	27508951	.	+	2	Parent=Os04t0549600-01
Chr04	irgsp1_rep	CDS	27509089	27509287	.	+	0	Parent=Os04t0549600-01
Chr04	irgsp1_rep	CDS	27509410	27509732	.	+	2	Parent=Os04t0549600-01
Chr04	irgsp1_rep	three_prime_UTR	27509733	27509994	.	+	.	Parent=Os04t0549600-01
Chr04	irgsp1_rep	mRNA	27506500	27509942	.	+	.	ID=Os04t0549600-02;Name=Os04t0549600-02;Locus_id=Os04g0549600;Oryzabase Gene Symbol Synonym(s)=OsDjA6%2C DjA6;Oryzabase Gene Name Synonym(s)=DnaJ domain protein A6%2C DnaJ protein RNB8;Note=Similar to OSIGBa0134H18.3 protein.;Transcript_evidence=AK061922 (DDBJ%2C Best hit);ORF_evidence=B0FFN7 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C cysteine-rich domain (IPR001305),Heat shock protein DnaJ%2C N-terminal (IPR001623),Chaperone DnaJ%2C C-terminal (IPR002939),Heat shock protein DnaJ (IPR003095),HSP40/DnaJ peptide-binding (IPR008971),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=001-042-B10;Oryzabase=12143;Expression=AK061922;TENOR=Os04t0549600-02;KEGG=Os04t0549600-02
Chr04	irgsp1_rep	CDS	27506500	27506586	.	+	0	Parent=Os04t0549600-02
Chr04	irgsp1_rep	CDS	27506667	27506832	.	+	0	Parent=Os04t0549600-02
Chr04	irgsp1_rep	CDS	27506943	27507081	.	+	2	Parent=Os04t0549600-02
Chr04	irgsp1_rep	CDS	27508576	27508709	.	+	1	Parent=Os04t0549600-02
Chr04	irgsp1_rep	CDS	27508809	27508951	.	+	2	Parent=Os04t0549600-02
Chr04	irgsp1_rep	CDS	27509089	27509287	.	+	0	Parent=Os04t0549600-02
Chr04	irgsp1_rep	CDS	27509410	27509732	.	+	2	Parent=Os04t0549600-02
Chr04	irgsp1_rep	three_prime_UTR	27509733	27509942	.	+	.	Parent=Os04t0549600-02
Chr04	irgsp1_rep	mRNA	27508883	27509736	.	-	.	ID=Os04t0549650-00;Name=Os04t0549650-00;Locus_id=Os04g0549650;Note=Non-protein coding transcript.;Transcript_evidence=BT016912 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0549650-00
Chr04	irgsp1_rep	exon	27509416	27509736	.	-	.	Parent=Os04t0549650-00
Chr04	irgsp1_rep	exon	27509088	27509291	.	-	.	Parent=Os04t0549650-00
Chr04	irgsp1_rep	exon	27508883	27508950	.	-	.	Parent=Os04t0549650-00
Chr04	irgsp1_rep	mRNA	27517205	27518340	.	+	.	ID=Os04t0549700-01;Name=Os04t0549700-01;Locus_id=Os04g0549700;RAP-DB Gene Symbol Synonym(s)=OsAP2/ERF-40%2C OsTOC168;RAP-DB Gene Name Synonym(s)=APETALA2/ethylene response factor 40;CGSNL Gene Symbol=ERF33;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 33;Oryzabase Gene Symbol Synonym(s)=OsERF#033%2C OsERF033%2C OsERF33%2C AP2/EREBP#040%2C AP2/EREBP40%2C OsDREB4-2;Oryzabase Gene Name Synonym(s)=ethylene response factor 33%2C APETALA2/ethylene-responsive element binding protein 40;Note=Auxin-induced transcription factor containing AP2/ERF domain%2C Regulation of adventitious root development;Transcript_evidence=AK107119;ORF_evidence=Q7XU22;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-binding transcription factor activity (GO:0003700);InterPro=DNA-binding domain superfamily (IPR016177),AP2/ERF domain superfamily (IPR036955),AP2/ERF domain (IPR001471);NIAS_FLcDNA=002-124-B03;Manual Curation=July 22%2C 2019;Literature_PMID=31318417;Oryzabase=10551;Expression=AK107119;TENOR=Os04t0549700-01;KEGG=Os04t0549700-01
Chr04	irgsp1_rep	five_prime_UTR	27517205	27517268	.	+	.	Parent=Os04t0549700-01
Chr04	irgsp1_rep	CDS	27517269	27518123	.	+	0	Parent=Os04t0549700-01
Chr04	irgsp1_rep	three_prime_UTR	27518124	27518340	.	+	.	Parent=Os04t0549700-01
Chr04	irgsp1_rep	mRNA	27523400	27524143	.	+	.	ID=Os04t0549800-00;Name=Os04t0549800-00;Locus_id=Os04g0549800;CGSNL Gene Symbol=ERF37;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 37;Oryzabase Gene Symbol Synonym(s)=OsERF#037%2C OsERF037%2C OsERF37%2C AP2/EREBP#041%2C AP2/EREBP41;Oryzabase Gene Name Synonym(s)=ethylene response factor 37%2C APETALA2/ethylene-responsive element binding protein 41;Note=Similar to OSIGBa0134H18.5 protein.;Transcript_evidence=BT086884 (DDBJ);ORF_evidence=Q01ID7 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);Oryzabase=10555;TENOR=Os04t0549800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	27523400	27524143	.	+	0	Parent=Os04t0549800-00
Chr04	irgsp1_rep	mRNA	27539878	27540865	.	+	.	ID=Os04t0550200-01;Name=Os04t0550200-01;Locus_id=Os04g0550200;CGSNL Gene Symbol=ERF34;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 34;Oryzabase Gene Symbol Synonym(s)=OsERF#034%2C OsERF034%2C OsERF34%2C AP2/EREBP#042%2C AP2/EREBP42;Oryzabase Gene Name Synonym(s)=ethylene response factor 34%2C APETALA2/ethylene-responsive element binding protein 42;Note=Pathogenesis-related transcriptional factor and ERF domain containing protein.;Transcript_evidence=AK108473 (DDBJ%2C Best hit);ORF_evidence=Q01ID5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=002-143-E08;Oryzabase=10552;Expression=AK108473;TENOR=Os04t0550200-01;KEGG=Os04t0550200-01
Chr04	irgsp1_rep	five_prime_UTR	27539878	27539922	.	+	.	Parent=Os04t0550200-01
Chr04	irgsp1_rep	CDS	27539923	27540576	.	+	0	Parent=Os04t0550200-01
Chr04	irgsp1_rep	three_prime_UTR	27540577	27540865	.	+	.	Parent=Os04t0550200-01
Chr04	irgsp1_rep	mRNA	27544416	27545300	.	+	.	ID=Os04t0550300-01;Name=Os04t0550300-01;Locus_id=Os04g0550300;Note=Hypothetical protein.;Transcript_evidence=AK107520 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-129-F08;Expression=AK107520;TENOR=Os04t0550300-01;KEGG=Os04t0550300-01
Chr04	irgsp1_rep	five_prime_UTR	27544416	27544584	.	+	.	Parent=Os04t0550300-01
Chr04	irgsp1_rep	CDS	27544585	27544872	.	+	0	Parent=Os04t0550300-01
Chr04	irgsp1_rep	three_prime_UTR	27544873	27545300	.	+	.	Parent=Os04t0550300-01
Chr04	irgsp1_rep	mRNA	27551423	27560074	.	-	.	ID=Os04t0550400-01;Name=Os04t0550400-01;Locus_id=Os04g0550400;RAP-DB Gene Symbol Synonym(s)=OsHUB1%2C HUB1;RAP-DB Gene Name Synonym(s)=HISTONE MONOUBIQUITINATION1%2C HISTONE MONOUBIQUITINATION 1;Oryzabase Gene Symbol Synonym(s)=OsHUB1%2C HUB1%2C SIP20;Oryzabase Gene Name Synonym(s)=HISTONE MONOUBIQUITINATION1%2C HISTONE MONOUBIQUITINATION 1%2C SKIP interacting protein 20%2C SKIPa-interacting protein 20%2C SKIPa-interacting protein 20;Note=E3 ligases of H2Bub1%2C Transcriptional regulation of anther development;Transcript_evidence=Inferred from literature;ORF_evidence=Q7XU27;GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING-type%2C conserved site (IPR017907);Manual Curation=August 26%2C 2015;Literature_PMID=26143250;Oryzabase=19840;TENOR=Os04t0550400-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	27559642	27560074	.	-	.	Parent=Os04t0550400-01
Chr04	irgsp1_rep	CDS	27559519	27559641	.	-	0	Parent=Os04t0550400-01
Chr04	irgsp1_rep	CDS	27557755	27557916	.	-	0	Parent=Os04t0550400-01
Chr04	irgsp1_rep	CDS	27557587	27557674	.	-	0	Parent=Os04t0550400-01
Chr04	irgsp1_rep	CDS	27556815	27557039	.	-	2	Parent=Os04t0550400-01
Chr04	irgsp1_rep	CDS	27556411	27556578	.	-	2	Parent=Os04t0550400-01
Chr04	irgsp1_rep	CDS	27555870	27556063	.	-	2	Parent=Os04t0550400-01
Chr04	irgsp1_rep	CDS	27555568	27555651	.	-	0	Parent=Os04t0550400-01
Chr04	irgsp1_rep	CDS	27555310	27555429	.	-	0	Parent=Os04t0550400-01
Chr04	irgsp1_rep	CDS	27555020	27555206	.	-	0	Parent=Os04t0550400-01
Chr04	irgsp1_rep	CDS	27554771	27554931	.	-	2	Parent=Os04t0550400-01
Chr04	irgsp1_rep	CDS	27554608	27554679	.	-	0	Parent=Os04t0550400-01
Chr04	irgsp1_rep	CDS	27554414	27554490	.	-	0	Parent=Os04t0550400-01
Chr04	irgsp1_rep	CDS	27553960	27554154	.	-	1	Parent=Os04t0550400-01
Chr04	irgsp1_rep	CDS	27553770	27553842	.	-	1	Parent=Os04t0550400-01
Chr04	irgsp1_rep	CDS	27553586	27553672	.	-	0	Parent=Os04t0550400-01
Chr04	irgsp1_rep	CDS	27552633	27552770	.	-	0	Parent=Os04t0550400-01
Chr04	irgsp1_rep	CDS	27552351	27552553	.	-	0	Parent=Os04t0550400-01
Chr04	irgsp1_rep	CDS	27552106	27552271	.	-	1	Parent=Os04t0550400-01
Chr04	irgsp1_rep	CDS	27551839	27551970	.	-	0	Parent=Os04t0550400-01
Chr04	irgsp1_rep	three_prime_UTR	27551423	27551838	.	-	.	Parent=Os04t0550400-01
Chr04	irgsp1_rep	mRNA	27563230	27566440	.	+	.	ID=Os04t0550500-01;Name=Os04t0550500-01;Locus_id=Os04g0550500;Oryzabase Gene Symbol Synonym(s)=OsNAGK1%2C NAGK1;Oryzabase Gene Name Synonym(s)=N-acetylglutamate kinase 1%2C N-acetyl glutamate kinase 1;Note=Similar to N-acetyl glutamate kinase 2.;Transcript_evidence=AK065970 (DDBJ%2C Best hit);ORF_evidence=Q01JC9 (UniProt);GO=Biological Process: arginine biosynthetic process (GO:0006526),Biological Process: proline biosynthetic process (GO:0006561),Biological Process: cellular amino acid biosynthetic process (GO:0008652),Cellular Component: cytoplasm (GO:0005737),Molecular Function: acetylglutamate kinase activity (GO:0003991),Molecular Function: glutamate 5-kinase activity (GO:0004349);InterPro=Aspartate/glutamate/uridylate kinase (IPR001048),Glutamate/acetylglutamate kinase (IPR001057),Acetylglutamate kinase (IPR004662);NIAS_FLcDNA=J013050I03;Oryzabase=14062;Expression=AK065970;TENOR=Os04t0550500-01;KEGG=Os04t0550500-01 (EC:2.7.2.-%2C EC:2.7.2.8)
Chr04	irgsp1_rep	five_prime_UTR	27563230	27563378	.	+	.	Parent=Os04t0550500-01
Chr04	irgsp1_rep	CDS	27563379	27564410	.	+	0	Parent=Os04t0550500-01
Chr04	irgsp1_rep	three_prime_UTR	27564411	27564429	.	+	.	Parent=Os04t0550500-01
Chr04	irgsp1_rep	three_prime_UTR	27565966	27566440	.	+	.	Parent=Os04t0550500-01
Chr04	irgsp1_rep	mRNA	27563253	27564511	.	+	.	ID=Os04t0550500-02;Name=Os04t0550500-02;Locus_id=Os04g0550500;Oryzabase Gene Symbol Synonym(s)=OsNAGK1%2C NAGK1;Oryzabase Gene Name Synonym(s)=N-acetylglutamate kinase 1%2C N-acetyl glutamate kinase 1;Note=Similar to N-acetyl glutamate kinase 2.;Transcript_evidence=AK071756 (DDBJ%2C Best hit);ORF_evidence=Q01JC9 (UniProt);GO=Biological Process: arginine biosynthetic process (GO:0006526),Biological Process: proline biosynthetic process (GO:0006561),Biological Process: cellular amino acid biosynthetic process (GO:0008652),Cellular Component: cytoplasm (GO:0005737),Molecular Function: acetylglutamate kinase activity (GO:0003991),Molecular Function: glutamate 5-kinase activity (GO:0004349);InterPro=Aspartate/glutamate/uridylate kinase (IPR001048),Glutamate/acetylglutamate kinase (IPR001057),Acetylglutamate kinase (IPR004662);NIAS_FLcDNA=J023114B06;Oryzabase=14062;Expression=AK071756;TENOR=Os04t0550500-02;KEGG=Os04t0550500-02 (EC:2.7.2.-%2C EC:2.7.2.8)
Chr04	irgsp1_rep	five_prime_UTR	27563253	27563378	.	+	.	Parent=Os04t0550500-02
Chr04	irgsp1_rep	CDS	27563379	27564410	.	+	0	Parent=Os04t0550500-02
Chr04	irgsp1_rep	three_prime_UTR	27564411	27564511	.	+	.	Parent=Os04t0550500-02
Chr04	irgsp1_rep	mRNA	27563329	27564627	.	+	.	ID=Os04t0550500-03;Name=Os04t0550500-03;Locus_id=Os04g0550500;Oryzabase Gene Symbol Synonym(s)=OsNAGK1%2C NAGK1;Oryzabase Gene Name Synonym(s)=N-acetylglutamate kinase 1%2C N-acetyl glutamate kinase 1;Note=Similar to N-acetyl glutamate kinase 2.;Transcript_evidence=AK104439 (DDBJ%2C Best hit),AK070256 (DDBJ%2C Best hit);ORF_evidence=Q01JC9 (UniProt);GO=Biological Process: arginine biosynthetic process (GO:0006526),Biological Process: proline biosynthetic process (GO:0006561),Biological Process: cellular amino acid biosynthetic process (GO:0008652),Cellular Component: cytoplasm (GO:0005737),Molecular Function: acetylglutamate kinase activity (GO:0003991),Molecular Function: glutamate 5-kinase activity (GO:0004349);InterPro=Aspartate/glutamate/uridylate kinase (IPR001048),Glutamate/acetylglutamate kinase (IPR001057),Acetylglutamate kinase (IPR004662);NIAS_FLcDNA=006-209-G07,J023043F24;Oryzabase=14062;Expression=AK104439;TENOR=Os04t0550500-03;KEGG=Os04t0550500-03 (EC:2.7.2.-%2C EC:2.7.2.8)
Chr04	irgsp1_rep	five_prime_UTR	27563329	27563378	.	+	.	Parent=Os04t0550500-03
Chr04	irgsp1_rep	CDS	27563379	27564410	.	+	0	Parent=Os04t0550500-03
Chr04	irgsp1_rep	three_prime_UTR	27564411	27564627	.	+	.	Parent=Os04t0550500-03
Chr04	irgsp1_rep	mRNA	27563340	27566383	.	+	.	ID=Os04t0550500-05;Name=Os04t0550500-05;Locus_id=Os04g0550500;Oryzabase Gene Symbol Synonym(s)=OsNAGK1%2C NAGK1;Oryzabase Gene Name Synonym(s)=N-acetylglutamate kinase 1%2C N-acetyl glutamate kinase 1;Note=Similar to N-acetyl glutamate kinase 2.;Transcript_evidence=AK099143 (DDBJ%2C Best hit);ORF_evidence=Q01JC9 (UniProt);GO=Biological Process: arginine biosynthetic process (GO:0006526),Biological Process: proline biosynthetic process (GO:0006561),Biological Process: cellular amino acid biosynthetic process (GO:0008652),Cellular Component: cytoplasm (GO:0005737),Molecular Function: acetylglutamate kinase activity (GO:0003991),Molecular Function: glutamate 5-kinase activity (GO:0004349);InterPro=Aspartate/glutamate/uridylate kinase (IPR001048),Glutamate/acetylglutamate kinase (IPR001057),Acetylglutamate kinase (IPR004662);NIAS_FLcDNA=J023061L10;Oryzabase=14062;Expression=AK099143;TENOR=Os04t0550500-05;KEGG=Os04t0550500-05 (EC:2.7.2.-%2C EC:2.7.2.8)
Chr04	irgsp1_rep	five_prime_UTR	27563340	27563378	.	+	.	Parent=Os04t0550500-05
Chr04	irgsp1_rep	CDS	27563379	27564410	.	+	0	Parent=Os04t0550500-05
Chr04	irgsp1_rep	three_prime_UTR	27564411	27564429	.	+	.	Parent=Os04t0550500-05
Chr04	irgsp1_rep	three_prime_UTR	27565966	27566383	.	+	.	Parent=Os04t0550500-05
Chr04	irgsp1_rep	mRNA	27567824	27570449	.	+	.	ID=Os04t0550600-01;Name=Os04t0550600-01;Locus_id=Os04g0550600;RAP-DB Gene Symbol Synonym(s)=HTD1%2C OsCCD7%2C D17;RAP-DB Gene Name Synonym(s)=HIGH-TILLERING DWARF1%2C carotenoid cleavage dioxygenase 7%2C DWARF-17;CGSNL Gene Symbol=D17;CGSNL Gene Name=DWARF SLENDER DWARF%2C TILLERING;Oryzabase Gene Symbol Synonym(s)=d17(t)%2C dwf14%2C d17%2C htd1%2C OsCCD7%2C CCD7%2C D17/HTD1%2C HTD1%2C OsD17;Oryzabase Gene Name Synonym(s)=slender dwarf%2C tillering dwarf%2C dwarf-17%2C high-tillering dwarf1%2C high-tillering dwarf 1%2C High-Tillering Dwarf1%2C High-Tillering Dwarf 1%2C catotenoid dioxygenase 7%2C carotenoid-cleaving dioxygenase 7%2C carotenoid cleavage dioxygenase 7%2C MAX3 ortholog;Note=Carotenoid cleavage dioxygenase%2C Negative regulation of the outgrowth of axillary buds%2C Strigolactones biosynthesis;Transcript_evidence=AK109771;ORF_evidence=Q7XU29;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on single donors with incorporation of molecular oxygen%2C incorporation of two atoms of oxygen (GO:0016702);InterPro=Carotenoid oxygenase (IPR004294);NIAS_FLcDNA=002-147-A08;Manual Curation=August 28%2C 2017;Literature_PMID=22422982,17092317;Oryzabase=63;Expression=AK109771;TENOR=Os04t0550600-01;KEGG=Os04t0550600-01 (EC:1.13.11.68)
Chr04	irgsp1_rep	five_prime_UTR	27567824	27567850	.	+	.	Parent=Os04t0550600-01
Chr04	irgsp1_rep	CDS	27567851	27568242	.	+	0	Parent=Os04t0550600-01
Chr04	irgsp1_rep	CDS	27568329	27568687	.	+	1	Parent=Os04t0550600-01
Chr04	irgsp1_rep	CDS	27568783	27568911	.	+	2	Parent=Os04t0550600-01
Chr04	irgsp1_rep	CDS	27569000	27569131	.	+	2	Parent=Os04t0550600-01
Chr04	irgsp1_rep	CDS	27569244	27569516	.	+	2	Parent=Os04t0550600-01
Chr04	irgsp1_rep	CDS	27569621	27570021	.	+	2	Parent=Os04t0550600-01
Chr04	irgsp1_rep	CDS	27570146	27570289	.	+	0	Parent=Os04t0550600-01
Chr04	irgsp1_rep	three_prime_UTR	27570290	27570449	.	+	.	Parent=Os04t0550600-01
Chr04	irgsp1_rep	mRNA	27570555	27572699	.	-	.	ID=Os04t0550700-01;Name=Os04t0550700-01;Locus_id=Os04g0550700;Note=Uncharacterised conserved protein UCP012943 domain containing protein.;Transcript_evidence=AK106156 (DDBJ%2C Best hit);ORF_evidence=Q01JC7 (UniProt);InterPro=Uncharacterised conserved protein UCP012943 (IPR016606);NIAS_FLcDNA=001-208-A05;Expression=AK106156;TENOR=Os04t0550700-01;KEGG=Os04t0550700-01
Chr04	irgsp1_rep	five_prime_UTR	27572573	27572699	.	-	.	Parent=Os04t0550700-01
Chr04	irgsp1_rep	CDS	27572109	27572572	.	-	0	Parent=Os04t0550700-01
Chr04	irgsp1_rep	CDS	27571293	27571620	.	-	1	Parent=Os04t0550700-01
Chr04	irgsp1_rep	CDS	27571061	27571154	.	-	0	Parent=Os04t0550700-01
Chr04	irgsp1_rep	CDS	27570720	27570952	.	-	2	Parent=Os04t0550700-01
Chr04	irgsp1_rep	three_prime_UTR	27570555	27570719	.	-	.	Parent=Os04t0550700-01
Chr04	irgsp1_rep	mRNA	27575661	27576994	.	-	.	ID=Os04t0550800-01;Name=Os04t0550800-01;Locus_id=Os04g0550800;CGSNL Gene Symbol=TIP5%3B1;CGSNL Gene Name=TONOPLAST INTRINSIC PROTEIN 5%3B1;Oryzabase Gene Symbol Synonym(s)=OsTIP5%3B1;Oryzabase Gene Name Synonym(s)=Probable aquaporin TIP5-1%2C Tonoplast intrinsic protein 5-1;Note=Major intrinsic protein family protein.;Transcript_evidence=AK070602 (DDBJ%2C Best hit);ORF_evidence=Q01JC6 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Major intrinsic protein%2C conserved site (IPR022357),Aquaporin-like (IPR023271);NIAS_FLcDNA=J023055O11;Oryzabase=8387;Expression=AK070602;TENOR=Os04t0550800-01;KEGG=Os04t0550800-01
Chr04	irgsp1_rep	five_prime_UTR	27576920	27576994	.	-	.	Parent=Os04t0550800-01
Chr04	irgsp1_rep	CDS	27576796	27576919	.	-	0	Parent=Os04t0550800-01
Chr04	irgsp1_rep	CDS	27576432	27576684	.	-	2	Parent=Os04t0550800-01
Chr04	irgsp1_rep	CDS	27575934	27576366	.	-	1	Parent=Os04t0550800-01
Chr04	irgsp1_rep	three_prime_UTR	27575661	27575933	.	-	.	Parent=Os04t0550800-01
Chr04	irgsp1_rep	mRNA	27576034	27576647	.	+	.	ID=Os04t0550833-00;Name=Os04t0550833-00;Locus_id=Os04g0550833;Note=Hypothetical protein.;Transcript_evidence=BT061568 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0550833-00
Chr04	irgsp1_rep	five_prime_UTR	27576034	27576035	.	+	.	Parent=Os04t0550833-00
Chr04	irgsp1_rep	CDS	27576036	27576333	.	+	0	Parent=Os04t0550833-00
Chr04	irgsp1_rep	CDS	27576425	27576525	.	+	2	Parent=Os04t0550833-00
Chr04	irgsp1_rep	three_prime_UTR	27576526	27576647	.	+	.	Parent=Os04t0550833-00
Chr04	irgsp1_rep	mRNA	27595181	27595879	.	+	.	ID=Os04t0550866-00;Name=Os04t0550866-00;Locus_id=Os04g0550866;Note=Hypothetical protein.;Transcript_evidence=BT061568 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0550866-00
Chr04	irgsp1_rep	five_prime_UTR	27595181	27595337	.	+	.	Parent=Os04t0550866-00
Chr04	irgsp1_rep	CDS	27595338	27595532	.	+	0	Parent=Os04t0550866-00
Chr04	irgsp1_rep	CDS	27595609	27595851	.	+	0	Parent=Os04t0550866-00
Chr04	irgsp1_rep	three_prime_UTR	27595852	27595879	.	+	.	Parent=Os04t0550866-00
Chr04	irgsp1_rep	mRNA	27595492	27596105	.	-	.	ID=Os04t0550900-00;Name=Os04t0550900-00;Locus_id=Os04g0550900;Note=aquaporin TIP2-3.;Transcript_evidence=Q7XA61 (UniProt);ORF_evidence=NP_001104907.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Aquaporin-like (IPR023271);TENOR=Os04t0550900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	27595979	27596105	.	-	0	Parent=Os04t0550900-00
Chr04	irgsp1_rep	CDS	27595625	27595874	.	-	2	Parent=Os04t0550900-00
Chr04	irgsp1_rep	CDS	27595492	27595543	.	-	1	Parent=Os04t0550900-00
Chr04	irgsp1_rep	mRNA	27605166	27608318	.	+	.	ID=Os04t0551200-01;Name=Os04t0551200-01;Locus_id=Os04g0551200;Note=Similar to Cytoplasmic malate dehydrogenase.;Transcript_evidence=AK059248 (DDBJ%2C Best hit);ORF_evidence=Q01JC3 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: malate metabolic process (GO:0006108),Biological Process: cellular carbohydrate metabolic process (GO:0044262),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: malate dehydrogenase activity (GO:0016615),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: L-malate dehydrogenase activity (GO:0030060);InterPro=Lactate/malate dehydrogenase%2C N-terminal (IPR001236),Malate dehydrogenase%2C active site (IPR001252),L-lactate/malate dehydrogenase (IPR001557),Malate dehydrogenase%2C type 2 (IPR010945),Malate dehydrogenase%2C NAD-dependent%2C cytosolic (IPR011274),Lactate dehydrogenase/glycoside hydrolase%2C family 4%2C C-terminal (IPR015955),NAD(P)-binding domain (IPR016040),Lactate/malate dehydrogenase%2C C-terminal (IPR022383);NIAS_FLcDNA=001-024-G07;Expression=AK059248;TENOR=Os04t0551200-01;KEGG=Os04t0551200-01 (EC:1.1.1.37)
Chr04	irgsp1_rep	five_prime_UTR	27605166	27605223	.	+	.	Parent=Os04t0551200-01
Chr04	irgsp1_rep	CDS	27605224	27605329	.	+	0	Parent=Os04t0551200-01
Chr04	irgsp1_rep	CDS	27605439	27605597	.	+	2	Parent=Os04t0551200-01
Chr04	irgsp1_rep	CDS	27605676	27605851	.	+	2	Parent=Os04t0551200-01
Chr04	irgsp1_rep	CDS	27607128	27607405	.	+	0	Parent=Os04t0551200-01
Chr04	irgsp1_rep	CDS	27607481	27607616	.	+	1	Parent=Os04t0551200-01
Chr04	irgsp1_rep	CDS	27607706	27607817	.	+	0	Parent=Os04t0551200-01
Chr04	irgsp1_rep	CDS	27607899	27607990	.	+	2	Parent=Os04t0551200-01
Chr04	irgsp1_rep	three_prime_UTR	27607991	27608318	.	+	.	Parent=Os04t0551200-01
Chr04	irgsp1_rep	mRNA	27608442	27612487	.	-	.	ID=Os04t0551300-01;Name=Os04t0551300-01;Locus_id=Os04g0551300;Note=Similar to Growth regulator like protein.;Transcript_evidence=AK103502 (DDBJ%2C Best hit);ORF_evidence=Q01JC2 (UniProt);InterPro=GDP-fucose protein O-fucosyltransferase (IPR019378);NIAS_FLcDNA=J033131B12;Expression=AK103502;TENOR=Os04t0551300-01;KEGG=Os04t0551300-01
Chr04	irgsp1_rep	five_prime_UTR	27612313	27612487	.	-	.	Parent=Os04t0551300-01
Chr04	irgsp1_rep	CDS	27612118	27612312	.	-	0	Parent=Os04t0551300-01
Chr04	irgsp1_rep	CDS	27611632	27611719	.	-	0	Parent=Os04t0551300-01
Chr04	irgsp1_rep	CDS	27611458	27611534	.	-	2	Parent=Os04t0551300-01
Chr04	irgsp1_rep	CDS	27611292	27611380	.	-	0	Parent=Os04t0551300-01
Chr04	irgsp1_rep	CDS	27610857	27611046	.	-	1	Parent=Os04t0551300-01
Chr04	irgsp1_rep	CDS	27610212	27610393	.	-	0	Parent=Os04t0551300-01
Chr04	irgsp1_rep	CDS	27609973	27610087	.	-	1	Parent=Os04t0551300-01
Chr04	irgsp1_rep	three_prime_UTR	27609419	27609972	.	-	.	Parent=Os04t0551300-01
Chr04	irgsp1_rep	three_prime_UTR	27608442	27609203	.	-	.	Parent=Os04t0551300-01
Chr04	irgsp1_rep	mRNA	27608423	27609392	.	-	.	ID=Os04t0551300-02;Name=Os04t0551300-02;Locus_id=Os04g0551300;Note=Similar to OSIGBa0122F23.8 protein.;Transcript_evidence=AK061936 (DDBJ%2C Best hit);ORF_evidence=Q01JC2 (UniProt);NIAS_FLcDNA=001-042-D05;Expression=AK061936;TENOR=Os04t0551300-02;KEGG=Os04t0551300-02
Chr04	irgsp1_rep	five_prime_UTR	27609278	27609392	.	-	.	Parent=Os04t0551300-02
Chr04	irgsp1_rep	CDS	27608957	27609277	.	-	0	Parent=Os04t0551300-02
Chr04	irgsp1_rep	three_prime_UTR	27608423	27608956	.	-	.	Parent=Os04t0551300-02
Chr04	irgsp1_rep	mRNA	27609034	27611514	.	+	.	ID=Os04t0551400-00;Name=Os04t0551400-00;Locus_id=Os04g0551400;Note=Non-protein coding transcript.;Transcript_evidence=tplb0058a02 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os04t0551400-00
Chr04	irgsp1_rep	exon	27609034	27609196	.	+	.	Parent=Os04t0551400-00
Chr04	irgsp1_rep	exon	27609411	27609732	.	+	.	Parent=Os04t0551400-00
Chr04	irgsp1_rep	exon	27609971	27610094	.	+	.	Parent=Os04t0551400-00
Chr04	irgsp1_rep	exon	27610218	27610408	.	+	.	Parent=Os04t0551400-00
Chr04	irgsp1_rep	exon	27610872	27611033	.	+	.	Parent=Os04t0551400-00
Chr04	irgsp1_rep	exon	27611280	27611375	.	+	.	Parent=Os04t0551400-00
Chr04	irgsp1_rep	exon	27611452	27611514	.	+	.	Parent=Os04t0551400-00
Chr04	irgsp1_rep	mRNA	27614776	27618001	.	+	.	ID=Os04t0551500-01;Name=Os04t0551500-01;Locus_id=Os04g0551500;CGSNL Gene Symbol=SPL7;CGSNL Gene Name=RICE SQUAMOSA PROMOTER-BINDING-LIKE 7;Oryzabase Gene Symbol Synonym(s)=OsSPL7;Oryzabase Gene Name Synonym(s)=Squamosa promoter-binding-like protein 7;Note=SBP domain containing protein.;Transcript_evidence=AK068749 (DDBJ%2C Best hit);ORF_evidence=Q7XT42 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Transcription factor%2C SBP-box (IPR004333);NIAS_FLcDNA=J013158C23;Oryzabase=6890;Expression=AK068749;TENOR=Os04t0551500-01;KEGG=Os04t0551500-01
Chr04	irgsp1_rep	five_prime_UTR	27614776	27614946	.	+	.	Parent=Os04t0551500-01
Chr04	irgsp1_rep	CDS	27614947	27615407	.	+	0	Parent=Os04t0551500-01
Chr04	irgsp1_rep	CDS	27615490	27615617	.	+	1	Parent=Os04t0551500-01
Chr04	irgsp1_rep	CDS	27617245	27617738	.	+	2	Parent=Os04t0551500-01
Chr04	irgsp1_rep	three_prime_UTR	27617739	27618001	.	+	.	Parent=Os04t0551500-01
Chr04	irgsp1_rep	mRNA	27614946	27617739	.	-	.	ID=Os04t0551550-00;Name=Os04t0551550-00;Locus_id=Os04g0551550;Note=Hypothetical protein.;Transcript_evidence=tplb0056k06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0551550-00
Chr04	irgsp1_rep	five_prime_UTR	27617402	27617739	.	-	.	Parent=Os04t0551550-00
Chr04	irgsp1_rep	CDS	27617232	27617401	.	-	0	Parent=Os04t0551550-00
Chr04	irgsp1_rep	CDS	27615489	27615602	.	-	1	Parent=Os04t0551550-00
Chr04	irgsp1_rep	CDS	27614946	27615406	.	-	1	Parent=Os04t0551550-00
Chr04	irgsp1_rep	mRNA	27627478	27628262	.	-	.	ID=Os04t0551600-01;Name=Os04t0551600-01;Locus_id=Os04g0551600;Note=Zinc finger%2C FYVE/PHD-type domain containing protein.;Transcript_evidence=AK064637 (DDBJ%2C Best hit);ORF_evidence=Q01JD0 (UniProt);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=002-114-A09;Expression=AK064637;TENOR=Os04t0551600-01;KEGG=Os04t0551600-01
Chr04	irgsp1_rep	five_prime_UTR	27628175	27628262	.	-	.	Parent=Os04t0551600-01
Chr04	irgsp1_rep	CDS	27628077	27628174	.	-	0	Parent=Os04t0551600-01
Chr04	irgsp1_rep	CDS	27627650	27627926	.	-	1	Parent=Os04t0551600-01
Chr04	irgsp1_rep	three_prime_UTR	27627478	27627649	.	-	.	Parent=Os04t0551600-01
Chr04	irgsp1_rep	mRNA	27633216	27637876	.	-	.	ID=Os04t0551700-01;Name=Os04t0551700-01;Locus_id=Os04g0551700;Note=PAP fibrillin family protein.;Transcript_evidence=AK068663 (DDBJ%2C Best hit);ORF_evidence=NP_001147396.1 (RefSeq);GO=Cellular Component: chloroplast (GO:0009507),Molecular Function: structural molecule activity (GO:0005198);InterPro=Plastid lipid-associated protein/fibrillin conserved domain (IPR006843);NIAS_FLcDNA=J013164L14;TENOR=Os04t0551700-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	27637394	27637876	.	-	0	Parent=Os04t0551700-01
Chr04	irgsp1_rep	CDS	27637187	27637251	.	-	0	Parent=Os04t0551700-01
Chr04	irgsp1_rep	CDS	27636287	27636386	.	-	1	Parent=Os04t0551700-01
Chr04	irgsp1_rep	three_prime_UTR	27634693	27636286	.	-	.	Parent=Os04t0551700-01
Chr04	irgsp1_rep	three_prime_UTR	27633216	27633442	.	-	.	Parent=Os04t0551700-01
Chr04	irgsp1_rep	mRNA	27638063	27643857	.	+	.	ID=Os04t0551800-01;Name=Os04t0551800-01;Locus_id=Os04g0551800;Note=Similar to T-complex protein 1%2C alpha subunit (TCP-1-alpha) (CCT-alpha).;Transcript_evidence=AK121568 (DDBJ%2C Best hit);ORF_evidence=B8ASU6 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: cellular protein metabolic process (GO:0044267),Molecular Function: ATP binding (GO:0005524),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Chaperonin TCP-1%2C conserved site (IPR002194),Chaperonin Cpn60/TCP-1 (IPR002423),T-complex protein 1%2C alpha subunit (IPR012715),Chaperone%2C tailless complex polypeptide 1 (IPR017998);NIAS_FLcDNA=J033035C24;TENOR=Os04t0551800-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	27638063	27638158	.	+	.	Parent=Os04t0551800-01
Chr04	irgsp1_rep	CDS	27638159	27638231	.	+	0	Parent=Os04t0551800-01
Chr04	irgsp1_rep	CDS	27638366	27638430	.	+	2	Parent=Os04t0551800-01
Chr04	irgsp1_rep	CDS	27638826	27638915	.	+	0	Parent=Os04t0551800-01
Chr04	irgsp1_rep	CDS	27639004	27639090	.	+	0	Parent=Os04t0551800-01
Chr04	irgsp1_rep	CDS	27639189	27639248	.	+	0	Parent=Os04t0551800-01
Chr04	irgsp1_rep	CDS	27639358	27639408	.	+	0	Parent=Os04t0551800-01
Chr04	irgsp1_rep	CDS	27639489	27639584	.	+	0	Parent=Os04t0551800-01
Chr04	irgsp1_rep	CDS	27639869	27639934	.	+	0	Parent=Os04t0551800-01
Chr04	irgsp1_rep	CDS	27640367	27640584	.	+	0	Parent=Os04t0551800-01
Chr04	irgsp1_rep	CDS	27640813	27640909	.	+	1	Parent=Os04t0551800-01
Chr04	irgsp1_rep	CDS	27641325	27641411	.	+	0	Parent=Os04t0551800-01
Chr04	irgsp1_rep	CDS	27641612	27641746	.	+	0	Parent=Os04t0551800-01
Chr04	irgsp1_rep	CDS	27641841	27641945	.	+	0	Parent=Os04t0551800-01
Chr04	irgsp1_rep	CDS	27642437	27642565	.	+	0	Parent=Os04t0551800-01
Chr04	irgsp1_rep	CDS	27642645	27642748	.	+	0	Parent=Os04t0551800-01
Chr04	irgsp1_rep	CDS	27643318	27643408	.	+	1	Parent=Os04t0551800-01
Chr04	irgsp1_rep	CDS	27643494	27643577	.	+	0	Parent=Os04t0551800-01
Chr04	irgsp1_rep	three_prime_UTR	27643578	27643857	.	+	.	Parent=Os04t0551800-01
Chr04	irgsp1_rep	mRNA	27645701	27647185	.	+	.	ID=Os04t0552000-00;Name=Os04t0552000-00;Locus_id=Os04g0552000;Note=Barwin-related endoglucanase domain containing protein.;Transcript_evidence=Q7XT40 (UniProt);ORF_evidence=Q7XT40 (UniProt);GO=Biological Process: sexual reproduction (GO:0019953),Cellular Component: extracellular region (GO:0005576);InterPro=Major pollen allergen Lol pI (IPR005795),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);TENOR=Os04t0552000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	27645701	27645863	.	+	0	Parent=Os04t0552000-00
Chr04	irgsp1_rep	CDS	27645957	27646069	.	+	2	Parent=Os04t0552000-00
Chr04	irgsp1_rep	CDS	27646415	27646608	.	+	0	Parent=Os04t0552000-00
Chr04	irgsp1_rep	CDS	27646861	27647185	.	+	1	Parent=Os04t0552000-00
Chr04	irgsp1_rep	mRNA	27646851	27647183	.	-	.	ID=Os04t0552066-00;Name=Os04t0552066-00;Locus_id=Os04g0552066;Note=Hypothetical protein.;Transcript_evidence=EU947703 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0552066-00
Chr04	irgsp1_rep	five_prime_UTR	27647183	27647183	.	-	.	Parent=Os04t0552066-00
Chr04	irgsp1_rep	CDS	27646851	27647182	.	-	0	Parent=Os04t0552066-00
Chr04	irgsp1_rep	mRNA	27655668	27657079	.	+	.	ID=Os04t0552200-01;Name=Os04t0552200-01;Locus_id=Os04g0552200;RAP-DB Gene Symbol Synonym(s)=OsEXPB5;RAP-DB Gene Name Synonym(s)=EXPANSIN B5;CGSNL Gene Symbol=EXPB5;CGSNL Gene Name=BETA-EXPANSIN 5;Oryzabase Gene Symbol Synonym(s)=OxEXPB5%2C osaEXPb1.19;Oryzabase Gene Name Synonym(s)=expansin B5%2C Expansin-B5%2C Beta-expansin-5;Note=Expansin B%2C Root hair formation;Transcript_evidence=AF261273;ORF_evidence=Q7XT39;GO=Biological Process: sexual reproduction (GO:0019953),Cellular Component: extracellular region (GO:0005576);InterPro=RlpA-like domain superfamily (IPR036908),Expansin%2C cellulose-binding-like domain superfamily (IPR036749),Expansin/Lol pI (IPR007118),Major pollen allergen Lol pI (IPR005795),RlpA-like protein%2C double-psi beta-barrel domain (IPR009009),Expansin/pollen allergen%2C DPBB domain (IPR007112),Expansin%2C cellulose-binding-like domain (IPR007117);Manual Curation=September 29%2C 2020;Literature_PMID=20811811;Oryzabase=9337;Expression=AF261273;TENOR=Os04t0552200-00;KEGG=Os04t0552200-00
Chr04	irgsp1_rep	five_prime_UTR	27655668	27655706	.	+	.	Parent=Os04t0552200-01
Chr04	irgsp1_rep	CDS	27655707	27655893	.	+	0	Parent=Os04t0552200-01
Chr04	irgsp1_rep	CDS	27655994	27656106	.	+	2	Parent=Os04t0552200-01
Chr04	irgsp1_rep	CDS	27656183	27656376	.	+	0	Parent=Os04t0552200-01
Chr04	irgsp1_rep	CDS	27656476	27656809	.	+	1	Parent=Os04t0552200-01
Chr04	irgsp1_rep	three_prime_UTR	27656810	27657079	.	+	.	Parent=Os04t0552200-01
Chr04	irgsp1_rep	mRNA	27656472	27656826	.	-	.	ID=Os04t0552250-00;Name=Os04t0552250-00;Locus_id=Os04g0552250;Note=Hypothetical gene.;Transcript_evidence=EU947703 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0552250-00
Chr04	irgsp1_rep	five_prime_UTR	27656825	27656826	.	-	.	Parent=Os04t0552250-00
Chr04	irgsp1_rep	CDS	27656472	27656824	.	-	0	Parent=Os04t0552250-00
Chr04	irgsp1_rep	mRNA	27661549	27662832	.	+	.	ID=Os04t0552300-01;Name=Os04t0552300-01;Locus_id=Os04g0552300;CGSNL Gene Symbol=CYCU2%3B1;CGSNL Gene Name=CYCLIN-U2-1;Oryzabase Gene Symbol Synonym(s)=CycU2%3B1%2C CycU2%3Bos%3B1%2C Orysa%3BCycU2%3B1%2C OsCYCP3%3B1%2C CYC U2;Oryzabase Gene Name Synonym(s)=U-type cyclin 2%3B1%2C P-type cyclin 3%3B1%2C U-type cyclin 2;Note=Cyclin-related 2 domain containing protein.;Transcript_evidence=AK061100 (DDBJ%2C Best hit);ORF_evidence=Q01IN1 (UniProt);GO=Biological Process: regulation of cyclin-dependent protein kinase activity (GO:0000079),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin P/U (IPR012389),Cyclin-like (IPR013763),Cyclin PHO80-like (IPR013922);NIAS_FLcDNA=006-207-A10;Oryzabase=13282;Expression=AK061100;TENOR=Os04t0552300-01;KEGG=Os04t0552300-01
Chr04	irgsp1_rep	five_prime_UTR	27661549	27661931	.	+	.	Parent=Os04t0552300-01
Chr04	irgsp1_rep	CDS	27661932	27662585	.	+	0	Parent=Os04t0552300-01
Chr04	irgsp1_rep	three_prime_UTR	27662586	27662832	.	+	.	Parent=Os04t0552300-01
Chr04	irgsp1_rep	mRNA	27666027	27668280	.	+	.	ID=Os04t0552400-01;Name=Os04t0552400-01;Locus_id=Os04g0552400;Oryzabase Gene Symbol Synonym(s)=OsSTA129;Note=Similar to OSIGBa0143N19.4 protein.;Transcript_evidence=AK069623 (DDBJ%2C Best hit);ORF_evidence=Q01IN0 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J023023M18;Oryzabase=19418;TENOR=Os04t0552400-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	27666027	27666152	.	+	.	Parent=Os04t0552400-01
Chr04	irgsp1_rep	CDS	27666153	27666176	.	+	0	Parent=Os04t0552400-01
Chr04	irgsp1_rep	CDS	27666289	27667977	.	+	0	Parent=Os04t0552400-01
Chr04	irgsp1_rep	three_prime_UTR	27667978	27668280	.	+	.	Parent=Os04t0552400-01
Chr04	irgsp1_rep	mRNA	27671737	27671807	.	-	.	ID=Os04t0552550-00;Name=Os04t0552550-00;Locus_id=Os04g0552550;Note=Non-protein coding transcript.;Transcript_evidence=X06283 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0552550-00
Chr04	irgsp1_rep	exon	27671737	27671807	.	-	.	Parent=Os04t0552550-00
Chr04	irgsp1_rep	mRNA	27675304	27676641	.	+	.	ID=Os04t0552700-01;Name=Os04t0552700-01;Locus_id=Os04g0552700;CGSNL Gene Symbol=DLN118;CGSNL Gene Name=DLN REPRESSOR 118;Oryzabase Gene Symbol Synonym(s)=OsDLN118;Oryzabase Gene Name Synonym(s)=DLN repressor 118%2C DLN motif protein 118;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK121993 (DDBJ%2C Best hit);ORF_evidence=Q01IM9 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J033109L03;Oryzabase=23193;Expression=AK121993;TENOR=Os04t0552700-01;KEGG=Os04t0552700-01
Chr04	irgsp1_rep	five_prime_UTR	27675304	27675380	.	+	.	Parent=Os04t0552700-01
Chr04	irgsp1_rep	CDS	27675381	27676316	.	+	0	Parent=Os04t0552700-01
Chr04	irgsp1_rep	three_prime_UTR	27676317	27676641	.	+	.	Parent=Os04t0552700-01
Chr04	irgsp1_rep	mRNA	27690861	27692280	.	+	.	ID=Os04t0553000-01;Name=Os04t0553000-01;Locus_id=Os04g0553000;CGSNL Gene Symbol=ABCI10;CGSNL Gene Name=ABC TRANSPORTER I FAMILY MEMBER 10;Oryzabase Gene Symbol Synonym(s)=OsABCI10%2C OsABCI10_1%2C OsABCI10_2;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCI subgroup member 10;Note=Similar to OSIGBa0143N19.6 protein.;Transcript_evidence=AK108691 (DDBJ%2C Best hit);ORF_evidence=Q01IM8 (UniProt);InterPro=Domain of unknown function DUF140 (IPR003453);NIAS_FLcDNA=002-149-D04;Oryzabase=12034;TENOR=Os04t0553000-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	27690861	27690862	.	+	.	Parent=Os04t0553000-01
Chr04	irgsp1_rep	CDS	27690863	27691978	.	+	0	Parent=Os04t0553000-01
Chr04	irgsp1_rep	three_prime_UTR	27691979	27692280	.	+	.	Parent=Os04t0553000-01
Chr04	irgsp1_rep	mRNA	27690867	27693987	.	+	.	ID=Os04t0553000-02;Name=Os04t0553000-02;Locus_id=Os04g0553000;CGSNL Gene Symbol=ABCI10;CGSNL Gene Name=ABC TRANSPORTER I FAMILY MEMBER 10;Oryzabase Gene Symbol Synonym(s)=OsABCI10%2C OsABCI10_1%2C OsABCI10_2;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCI subgroup member 10;Note=Similar to OSIGBa0143N19.6 protein.;Transcript_evidence=AK101413 (DDBJ%2C Best hit);ORF_evidence=Q01IM8 (UniProt);InterPro=Domain of unknown function DUF140 (IPR003453);NIAS_FLcDNA=J033037J15;Oryzabase=12034;TENOR=Os04t0553000-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	27690867	27690868	.	+	.	Parent=Os04t0553000-02
Chr04	irgsp1_rep	CDS	27690869	27691978	.	+	0	Parent=Os04t0553000-02
Chr04	irgsp1_rep	three_prime_UTR	27691979	27692795	.	+	.	Parent=Os04t0553000-02
Chr04	irgsp1_rep	three_prime_UTR	27693446	27693987	.	+	.	Parent=Os04t0553000-02
Chr04	irgsp1_rep	mRNA	27691015	27691371	.	-	.	ID=Os04t0553050-00;Name=Os04t0553050-00;Locus_id=Os04g0553050;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os04t0553050-00
Chr04	irgsp1_rep	CDS	27691015	27691371	.	-	0	Parent=Os04t0553050-00
Chr04	irgsp1_rep	mRNA	27700900	27702667	.	-	.	ID=Os04t0553300-01;Name=Os04t0553300-01;Locus_id=Os04g0553300;Note=Similar to OSIGBa0143N19.8 protein.;Transcript_evidence=AK240916 (DDBJ%2C Best hit);ORF_evidence=Q01IM6 (UniProt);NIAS_FLcDNA=J065037L06;TENOR=Os04t0553300-01;KEGG=Os04t0553300-01
Chr04	irgsp1_rep	five_prime_UTR	27702651	27702667	.	-	.	Parent=Os04t0553300-01
Chr04	irgsp1_rep	CDS	27702445	27702650	.	-	0	Parent=Os04t0553300-01
Chr04	irgsp1_rep	CDS	27701946	27702046	.	-	1	Parent=Os04t0553300-01
Chr04	irgsp1_rep	CDS	27701684	27701774	.	-	2	Parent=Os04t0553300-01
Chr04	irgsp1_rep	CDS	27701466	27701517	.	-	1	Parent=Os04t0553300-01
Chr04	irgsp1_rep	three_prime_UTR	27701422	27701465	.	-	.	Parent=Os04t0553300-01
Chr04	irgsp1_rep	three_prime_UTR	27700900	27701162	.	-	.	Parent=Os04t0553300-01
Chr04	irgsp1_rep	mRNA	27702750	27703061	.	-	.	ID=Os04t0553401-00;Name=Os04t0553401-00;Locus_id=Os04g0553401;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001174037.1 (RefSeq);TENOR=Os04t0553401-00
Chr04	irgsp1_rep	CDS	27702750	27703061	.	-	0	Parent=Os04t0553401-00
Chr04	irgsp1_rep	mRNA	27706669	27707965	.	-	.	ID=Os04t0553500-01;Name=Os04t0553500-01;Locus_id=Os04g0553500;CGSNL Gene Symbol=PME15;CGSNL Gene Name=PECTIN METHYLESTERASE 15;Oryzabase Gene Symbol Synonym(s)=OsPME15;Oryzabase Gene Name Synonym(s)=pectin methylesterase 15;Note=Pectin lyase fold domain containing protein.;Transcript_evidence=AK067182 (DDBJ%2C Best hit);ORF_evidence=Q01IM5 (UniProt);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),Pectinesterase%2C active site (IPR018040);NIAS_FLcDNA=J013095P22;Oryzabase=13179;Expression=AK067182;TENOR=Os04t0553500-01;KEGG=Os04t0553500-01
Chr04	irgsp1_rep	five_prime_UTR	27707718	27707965	.	-	.	Parent=Os04t0553500-01
Chr04	irgsp1_rep	CDS	27707260	27707717	.	-	0	Parent=Os04t0553500-01
Chr04	irgsp1_rep	CDS	27706984	27707137	.	-	1	Parent=Os04t0553500-01
Chr04	irgsp1_rep	three_prime_UTR	27706669	27706983	.	-	.	Parent=Os04t0553500-01
Chr04	irgsp1_rep	mRNA	27708143	27708454	.	-	.	ID=Os04t0553650-00;Name=Os04t0553650-00;Locus_id=Os04g0553650;Note=Similar to Pectinesterase.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01IM5 (UniProt);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);TENOR=Os04t0553650-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	27708429	27708454	.	-	0	Parent=Os04t0553650-00
Chr04	irgsp1_rep	CDS	27708143	27708341	.	-	1	Parent=Os04t0553650-00
Chr04	irgsp1_rep	mRNA	27720100	27725102	.	-	.	ID=Os04t0553800-01;Name=Os04t0553800-01;Locus_id=Os04g0553800;CGSNL Gene Symbol=PGSIP-C2;CGSNL Gene Name=PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN C2;Oryzabase Gene Symbol Synonym(s)=OsPGSIP-C2;Oryzabase Gene Name Synonym(s)=plant glycogenin-like starch initiation protein C2;Note=Similar to OSIGBa0143N19.10 protein.;Transcript_evidence=AK067441 (DDBJ%2C Best hit);ORF_evidence=Q01IM4 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 8 (IPR002495);NIAS_FLcDNA=J013100E18;Oryzabase=23276;TENOR=Os04t0553800-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	27724721	27725102	.	-	.	Parent=Os04t0553800-01
Chr04	irgsp1_rep	CDS	27724527	27724720	.	-	0	Parent=Os04t0553800-01
Chr04	irgsp1_rep	CDS	27722581	27722836	.	-	1	Parent=Os04t0553800-01
Chr04	irgsp1_rep	CDS	27721703	27721904	.	-	0	Parent=Os04t0553800-01
Chr04	irgsp1_rep	CDS	27721481	27721628	.	-	2	Parent=Os04t0553800-01
Chr04	irgsp1_rep	CDS	27720484	27721021	.	-	1	Parent=Os04t0553800-01
Chr04	irgsp1_rep	three_prime_UTR	27720100	27720483	.	-	.	Parent=Os04t0553800-01
Chr04	irgsp1_rep	mRNA	27720100	27724413	.	-	.	ID=Os04t0553800-02;Name=Os04t0553800-02;Locus_id=Os04g0553800;CGSNL Gene Symbol=PGSIP-C2;CGSNL Gene Name=PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN C2;Oryzabase Gene Symbol Synonym(s)=OsPGSIP-C2;Oryzabase Gene Name Synonym(s)=plant glycogenin-like starch initiation protein C2;Note=Similar to OSIGBa0143N19.10 protein.;Transcript_evidence=AK068076 (DDBJ%2C Best hit);ORF_evidence=Q01IM4 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 8 (IPR002495);NIAS_FLcDNA=J013132D03;Oryzabase=23276;Expression=AK068076;TENOR=Os04t0553800-02;KEGG=Os04t0553800-02
Chr04	irgsp1_rep	five_prime_UTR	27724412	27724413	.	-	.	Parent=Os04t0553800-02
Chr04	irgsp1_rep	CDS	27724362	27724411	.	-	0	Parent=Os04t0553800-02
Chr04	irgsp1_rep	CDS	27722581	27722836	.	-	1	Parent=Os04t0553800-02
Chr04	irgsp1_rep	CDS	27721703	27721904	.	-	0	Parent=Os04t0553800-02
Chr04	irgsp1_rep	CDS	27721481	27721628	.	-	2	Parent=Os04t0553800-02
Chr04	irgsp1_rep	CDS	27720484	27721021	.	-	1	Parent=Os04t0553800-02
Chr04	irgsp1_rep	three_prime_UTR	27720100	27720483	.	-	.	Parent=Os04t0553800-02
Chr04	irgsp1_rep	mRNA	27720136	27724327	.	-	.	ID=Os04t0553800-03;Name=Os04t0553800-03;Locus_id=Os04g0553800;CGSNL Gene Symbol=PGSIP-C2;CGSNL Gene Name=PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN C2;Oryzabase Gene Symbol Synonym(s)=OsPGSIP-C2;Oryzabase Gene Name Synonym(s)=plant glycogenin-like starch initiation protein C2;Note=Similar to OSIGBa0143N19.10 protein.;Transcript_evidence=AK070954 (DDBJ%2C Best hit);ORF_evidence=Q01IM4 (UniProt);NIAS_FLcDNA=J023072I01;Oryzabase=23276;Expression=AK070954;TENOR=Os04t0553800-03;KEGG=Os04t0553800-03
Chr04	irgsp1_rep	five_prime_UTR	27722866	27724327	.	-	.	Parent=Os04t0553800-03
Chr04	irgsp1_rep	CDS	27722704	27722865	.	-	0	Parent=Os04t0553800-03
Chr04	irgsp1_rep	CDS	27722581	27722597	.	-	0	Parent=Os04t0553800-03
Chr04	irgsp1_rep	CDS	27721865	27721904	.	-	1	Parent=Os04t0553800-03
Chr04	irgsp1_rep	three_prime_UTR	27721703	27721864	.	-	.	Parent=Os04t0553800-03
Chr04	irgsp1_rep	three_prime_UTR	27721481	27721628	.	-	.	Parent=Os04t0553800-03
Chr04	irgsp1_rep	three_prime_UTR	27720136	27721021	.	-	.	Parent=Os04t0553800-03
Chr04	irgsp1_rep	mRNA	27726325	27728086	.	-	.	ID=Os04t0554000-00;Name=Os04t0554000-00;Locus_id=Os04g0554000;CGSNL Gene Symbol=TPP5;CGSNL Gene Name=TREHALOSE-6-PHOSPHATE PHOSHPHATASE 5;Oryzabase Gene Symbol Synonym(s)=OsTPP5;Note=Similar to OSIGBa0143N19.11 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01IM3 (UniProt);GO=Biological Process: trehalose biosynthetic process (GO:0005992),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Trehalose-phosphatase (IPR003337),HAD-superfamily hydrolase%2C subfamily IIB (IPR006379),HAD-like domain (IPR023214);Oryzabase=9980;TENOR=Os04t0554000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	27727997	27728086	.	-	0	Parent=Os04t0554000-00
Chr04	irgsp1_rep	CDS	27727778	27727918	.	-	0	Parent=Os04t0554000-00
Chr04	irgsp1_rep	CDS	27727612	27727683	.	-	0	Parent=Os04t0554000-00
Chr04	irgsp1_rep	CDS	27727406	27727504	.	-	0	Parent=Os04t0554000-00
Chr04	irgsp1_rep	CDS	27727208	27727264	.	-	0	Parent=Os04t0554000-00
Chr04	irgsp1_rep	CDS	27727014	27727115	.	-	0	Parent=Os04t0554000-00
Chr04	irgsp1_rep	CDS	27726810	27726887	.	-	0	Parent=Os04t0554000-00
Chr04	irgsp1_rep	CDS	27726580	27726720	.	-	0	Parent=Os04t0554000-00
Chr04	irgsp1_rep	CDS	27726325	27726477	.	-	0	Parent=Os04t0554000-00
Chr04	irgsp1_rep	mRNA	27732744	27735793	.	+	.	ID=Os04t0554200-01;Name=Os04t0554200-01;Locus_id=Os04g0554200;Note=Similar to OSIGBa0143N19.13 protein.;Transcript_evidence=AK066540 (DDBJ%2C Best hit);ORF_evidence=Q01IM1 (UniProt);GO=Molecular Function: structural molecule activity (GO:0005198);InterPro=Major sperm protein (IPR000535),PapD-like (IPR008962),Vesicle-associated membrane protein (IPR016763);NIAS_FLcDNA=J013070M12;TENOR=Os04t0554200-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	27732744	27732865	.	+	.	Parent=Os04t0554200-01
Chr04	irgsp1_rep	CDS	27732866	27732914	.	+	0	Parent=Os04t0554200-01
Chr04	irgsp1_rep	CDS	27733022	27733092	.	+	2	Parent=Os04t0554200-01
Chr04	irgsp1_rep	CDS	27733206	27733287	.	+	0	Parent=Os04t0554200-01
Chr04	irgsp1_rep	CDS	27733411	27733526	.	+	2	Parent=Os04t0554200-01
Chr04	irgsp1_rep	CDS	27733615	27733812	.	+	0	Parent=Os04t0554200-01
Chr04	irgsp1_rep	three_prime_UTR	27733813	27734579	.	+	.	Parent=Os04t0554200-01
Chr04	irgsp1_rep	three_prime_UTR	27735440	27735793	.	+	.	Parent=Os04t0554200-01
Chr04	irgsp1_rep	mRNA	27732827	27735793	.	+	.	ID=Os04t0554200-02;Name=Os04t0554200-02;Locus_id=Os04g0554200;Note=PapD-like domain containing protein.;Transcript_evidence=AK060752 (DDBJ%2C Best hit);ORF_evidence=Q01IM1 (UniProt);GO=Molecular Function: structural molecule activity (GO:0005198);InterPro=Major sperm protein (IPR000535),PapD-like (IPR008962),Vesicle-associated membrane protein (IPR016763);NIAS_FLcDNA=001-032-G08;TENOR=Os04t0554200-02;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	27732827	27732865	.	+	.	Parent=Os04t0554200-02
Chr04	irgsp1_rep	CDS	27732866	27732914	.	+	0	Parent=Os04t0554200-02
Chr04	irgsp1_rep	CDS	27733022	27733092	.	+	2	Parent=Os04t0554200-02
Chr04	irgsp1_rep	CDS	27733206	27733287	.	+	0	Parent=Os04t0554200-02
Chr04	irgsp1_rep	CDS	27733411	27733526	.	+	2	Parent=Os04t0554200-02
Chr04	irgsp1_rep	CDS	27733615	27733791	.	+	0	Parent=Os04t0554200-02
Chr04	irgsp1_rep	CDS	27733864	27733911	.	+	0	Parent=Os04t0554200-02
Chr04	irgsp1_rep	CDS	27734502	27734579	.	+	0	Parent=Os04t0554200-02
Chr04	irgsp1_rep	CDS	27735440	27735553	.	+	0	Parent=Os04t0554200-02
Chr04	irgsp1_rep	three_prime_UTR	27735554	27735793	.	+	.	Parent=Os04t0554200-02
Chr04	irgsp1_rep	mRNA	27736481	27737152	.	-	.	ID=Os04t0554300-00;Name=Os04t0554300-00;Locus_id=Os04g0554300;Note=Similar to OSIGBa0143N19.14 protein.;Transcript_evidence=EU973232 (DDBJ);ORF_evidence=Q01IM0 (UniProt);TENOR=Os04t0554300-00
Chr04	irgsp1_rep	CDS	27736481	27737152	.	-	0	Parent=Os04t0554300-00
Chr04	irgsp1_rep	mRNA	27740064	27740809	.	+	.	ID=Os04t0554500-00;Name=Os04t0554500-00;Locus_id=Os04g0554500;CGSNL Gene Symbol=HYPRP6;CGSNL Gene Name=HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsHyPRP06%2C HyP/GRP06%2C OsHyPRP6%2C HyP/GRP6%2C OsHyPRP12%2C HyPRP12;Oryzabase Gene Name Synonym(s)=hybrid proline- or glycine-rich protein 6%2C Hybrid Proline-Rich Protein 12;Note=Similar to RCc3 protein.;Transcript_evidence=AY466109 (DDBJ%2C Best hit);ORF_evidence=NP_001152564.1 (RefSeq);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);Oryzabase=18607;Expression=AY466109;TENOR=Os04t0554500-00;KEGG=Os04t0554500-00
Chr04	irgsp1_rep	five_prime_UTR	27740064	27740138	.	+	.	Parent=Os04t0554500-00
Chr04	irgsp1_rep	CDS	27740139	27740531	.	+	0	Parent=Os04t0554500-00
Chr04	irgsp1_rep	three_prime_UTR	27740532	27740809	.	+	.	Parent=Os04t0554500-00
Chr04	irgsp1_rep	mRNA	27743339	27743963	.	+	.	ID=Os04t0554600-00;Name=Os04t0554600-00;Locus_id=Os04g0554600;CGSNL Gene Symbol=HYPRP7;CGSNL Gene Name=HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 7;Oryzabase Gene Symbol Synonym(s)=OsHyPRP07%2C HyP/GRP07%2C OsHyPRP7%2C HyP/GRP7%2C OsHyPRP13%2C HyPRP13;Oryzabase Gene Name Synonym(s)=hybrid proline- or glycine-rich protein 7%2C Hybrid Proline-Rich Protein 13;Note=Similar to RCc3 protein.;Transcript_evidence=AK332827 (DDBJ);ORF_evidence=Q40721 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);Oryzabase=18608;TENOR=Os04t0554600-00;KEGG=Os04t0554600-00
Chr04	irgsp1_rep	CDS	27743339	27743734	.	+	0	Parent=Os04t0554600-00
Chr04	irgsp1_rep	three_prime_UTR	27743735	27743963	.	+	.	Parent=Os04t0554600-00
Chr04	irgsp1_rep	mRNA	27753369	27754530	.	+	.	ID=Os04t0554800-01;Name=Os04t0554800-01;Locus_id=Os04g0554800;CGSNL Gene Symbol=HYPRP8;CGSNL Gene Name=HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 8;Oryzabase Gene Symbol Synonym(s)=OsHyPRP08%2C HyP/GRP08%2C OsHyPRP8%2C HyP/GRP8%2C OsHyPRP14%2C HyPRP14;Oryzabase Gene Name Synonym(s)=hybrid proline- or glycine-rich protein 8%2C Hybrid Proline-Rich Protein 14;Note=Similar to RCc3 protein.;Transcript_evidence=AK242066 (DDBJ%2C Best hit);ORF_evidence=NP_001148290.1 (RefSeq);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=J075130A11;Oryzabase=18609;TENOR=Os04t0554800-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	27753369	27753453	.	+	.	Parent=Os04t0554800-01
Chr04	irgsp1_rep	CDS	27753454	27753867	.	+	0	Parent=Os04t0554800-01
Chr04	irgsp1_rep	three_prime_UTR	27753868	27754530	.	+	.	Parent=Os04t0554800-01
Chr04	irgsp1_rep	mRNA	27759193	27759736	.	-	.	ID=Os04t0554900-00;Name=Os04t0554900-00;Locus_id=Os04g0554900;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A3AW97 (UniProt);TENOR=Os04t0554900-00;KEGG=Os04t0554900-00
Chr04	irgsp1_rep	CDS	27759551	27759736	.	-	0	Parent=Os04t0554900-00
Chr04	irgsp1_rep	CDS	27759193	27759453	.	-	0	Parent=Os04t0554900-00
Chr04	irgsp1_rep	mRNA	27764668	27767324	.	+	.	ID=Os04t0555000-01;Name=Os04t0555000-01;Locus_id=Os04g0555000;RAP-DB Gene Symbol Synonym(s)=OsHAM3;RAP-DB Gene Name Synonym(s)=hairy meristem 3;CGSNL Gene Symbol=HAM3;CGSNL Gene Name=HAIRY MERISTEM 3;Oryzabase Gene Symbol Synonym(s)=OsHAM3%2C OsGRAS-21%2C OsGRAS21%2C GRAS-21%2C GRAS21;Oryzabase Gene Name Synonym(s)=hairy meristem 3%2C GRAS protein 21;Note=GRAS (GAI-RGA-SCR) plant-specific transcription factor%2C Maintenance of shoot apical meristem indeterminacy%2C Regulation of vegetative to reproductive phase change;Transcript_evidence=AK100757;ORF_evidence=Q7XT28;InterPro=Transcription factor GRAS (IPR005202);NIAS_FLcDNA=J023118P13;Manual Curation=December 25%2C 2017;Literature_PMID=26023934;Oryzabase=19829;Expression=AK100757;TENOR=Os04t0555000-01;KEGG=Os04t0555000-01;Subcellular location=nucleus (GO:0005634)
Chr04	irgsp1_rep	five_prime_UTR	27764668	27764872	.	+	.	Parent=Os04t0555000-01
Chr04	irgsp1_rep	CDS	27764873	27767008	.	+	0	Parent=Os04t0555000-01
Chr04	irgsp1_rep	three_prime_UTR	27767009	27767324	.	+	.	Parent=Os04t0555000-01
Chr04	irgsp1_rep	mRNA	27764976	27767008	.	-	.	ID=Os04t0555151-00;Name=Os04t0555151-00;Locus_id=Os04g0555151;Note=Hypothetical protein.;Transcript_evidence=AK360819 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0555151-00
Chr04	irgsp1_rep	five_prime_UTR	27765701	27767008	.	-	.	Parent=Os04t0555151-00
Chr04	irgsp1_rep	CDS	27765667	27765700	.	-	0	Parent=Os04t0555151-00
Chr04	irgsp1_rep	CDS	27764976	27765444	.	-	2	Parent=Os04t0555151-00
Chr04	irgsp1_rep	mRNA	27783578	27787138	.	-	.	ID=Os04t0555300-01;Name=Os04t0555300-01;Locus_id=Os04g0555300;RAP-DB Gene Symbol Synonym(s)=OsVPE1;RAP-DB Gene Name Synonym(s)=vacuolar phosphate efflux transporter 1%2C vacuolar Pi efflux transporter 1;CGSNL Gene Symbol=FCO11;CGSNL Gene Name=FUNCTIONING IN CESIUM OVER-TRANSPORT 11;Oryzabase Gene Symbol Synonym(s)=OsFCO11%2C OsVPE1%2C VPE1;Oryzabase Gene Name Synonym(s)=Functioning in Cesium Over-transport 11%2C vacuolar Pi efflux transporter 1%2C vacuolar phosphate efflux transporter 1;Note=Vacuolar phosphate efflux transporter%2C Pi homeostasis;Transcript_evidence=AK103226;ORF_evidence=Q7X8K1;GO=Biological Process: transmembrane transport (GO:0055085),Molecular Function: transmembrane transporter activity (GO:0022857),Cellular Component: integral component of plasma membrane (GO:0005887),Cellular Component: integral component of membrane (GO:0016021);InterPro=MFS transporter superfamily (IPR036259),Major facilitator superfamily (IPR011701),Sugar phosphate transporter (IPR000849),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J033123B14;Manual Curation=October 11%2C 2019;Literature_PMID=30626920;Oryzabase=21695;TENOR=Os04t0555300-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=vacuolar membrane (GO:0005774)
Chr04	irgsp1_rep	five_prime_UTR	27786997	27787138	.	-	.	Parent=Os04t0555300-01
Chr04	irgsp1_rep	five_prime_UTR	27785760	27785822	.	-	.	Parent=Os04t0555300-01
Chr04	irgsp1_rep	CDS	27784778	27785759	.	-	0	Parent=Os04t0555300-01
Chr04	irgsp1_rep	CDS	27783982	27784547	.	-	2	Parent=Os04t0555300-01
Chr04	irgsp1_rep	three_prime_UTR	27783578	27783981	.	-	.	Parent=Os04t0555300-01
Chr04	irgsp1_rep	mRNA	27783735	27785192	.	-	.	ID=Os04t0555300-02;Name=Os04t0555300-02;Locus_id=Os04g0555300;CGSNL Gene Symbol=FCO11;CGSNL Gene Name=FUNCTIONING IN CESIUM OVER-TRANSPORT 11;Oryzabase Gene Symbol Synonym(s)=OsFCO11%2C OsVPE1%2C VPE1;Oryzabase Gene Name Synonym(s)=Functioning in Cesium Over-transport 11%2C vacuolar Pi efflux transporter 1%2C vacuolar phosphate efflux transporter 1;Note=Similar to Glycerol 3-phosphate permease.;Transcript_evidence=AK105088 (DDBJ%2C Best hit);ORF_evidence=B6ST65 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=001-047-B04;Oryzabase=21695;TENOR=Os04t0555300-02;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	27784778	27785192	.	-	0	Parent=Os04t0555300-02
Chr04	irgsp1_rep	CDS	27783982	27784547	.	-	2	Parent=Os04t0555300-02
Chr04	irgsp1_rep	three_prime_UTR	27783735	27783981	.	-	.	Parent=Os04t0555300-02
Chr04	irgsp1_rep	mRNA	27791895	27795858	.	+	.	ID=Os04t0555400-01;Name=Os04t0555400-01;Locus_id=Os04g0555400;Oryzabase Gene Symbol Synonym(s)=OsWD40-105;Note=Similar to Serologically defined breast cancer antigen NY-BR-99.;Transcript_evidence=AK066109 (DDBJ%2C Best hit),AK101071 (DDBJ%2C Best hit),AK120749 (DDBJ%2C Best hit);ORF_evidence=A2Q2G1 (UniProt);InterPro=Pre-mRNA processing ribonucleoprotein%2C snoRNA-binding domain (IPR002687),NOSIC (IPR012976),Prp31 C-terminal (IPR019175);NIAS_FLcDNA=J013052N06,J033024A09,J023004O13;Oryzabase=10786;TENOR=Os04t0555400-01
Chr04	irgsp1_rep	five_prime_UTR	27791895	27792077	.	+	.	Parent=Os04t0555400-01
Chr04	irgsp1_rep	five_prime_UTR	27792403	27792459	.	+	.	Parent=Os04t0555400-01
Chr04	irgsp1_rep	CDS	27792460	27792462	.	+	0	Parent=Os04t0555400-01
Chr04	irgsp1_rep	CDS	27792609	27792671	.	+	0	Parent=Os04t0555400-01
Chr04	irgsp1_rep	CDS	27792757	27792894	.	+	0	Parent=Os04t0555400-01
Chr04	irgsp1_rep	CDS	27793229	27794119	.	+	0	Parent=Os04t0555400-01
Chr04	irgsp1_rep	CDS	27794299	27794371	.	+	0	Parent=Os04t0555400-01
Chr04	irgsp1_rep	CDS	27794483	27794585	.	+	2	Parent=Os04t0555400-01
Chr04	irgsp1_rep	CDS	27794821	27794896	.	+	1	Parent=Os04t0555400-01
Chr04	irgsp1_rep	CDS	27795338	27795445	.	+	0	Parent=Os04t0555400-01
Chr04	irgsp1_rep	three_prime_UTR	27795446	27795858	.	+	.	Parent=Os04t0555400-01
Chr04	irgsp1_rep	mRNA	27795857	27798763	.	-	.	ID=Os04t0555500-01;Name=Os04t0555500-01;Locus_id=Os04g0555500;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK108782 (DDBJ%2C Best hit);ORF_evidence=NP_182078.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=002-151-A06;Expression=AK108782;TENOR=Os04t0555500-01;KEGG=Os04t0555500-01
Chr04	irgsp1_rep	five_prime_UTR	27798596	27798763	.	-	.	Parent=Os04t0555500-01
Chr04	irgsp1_rep	CDS	27798127	27798595	.	-	0	Parent=Os04t0555500-01
Chr04	irgsp1_rep	CDS	27796718	27797490	.	-	2	Parent=Os04t0555500-01
Chr04	irgsp1_rep	CDS	27796515	27796637	.	-	0	Parent=Os04t0555500-01
Chr04	irgsp1_rep	CDS	27796336	27796404	.	-	0	Parent=Os04t0555500-01
Chr04	irgsp1_rep	three_prime_UTR	27795857	27796335	.	-	.	Parent=Os04t0555500-01
Chr04	irgsp1_rep	mRNA	27806814	27815440	.	-	.	ID=Os04t0555600-01;Name=Os04t0555600-01;Locus_id=Os04g0555600;Note=Similar to WD-40 repeat family protein / beige-related.;Transcript_evidence=AK100443 (DDBJ%2C Best hit);ORF_evidence=NP_182078.1 (RefSeq);InterPro=Concanavalin A-like lectin/glucanase (IPR008985);NIAS_FLcDNA=J023090C16;TENOR=Os04t0555600-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	27815439	27815440	.	-	.	Parent=Os04t0555600-01
Chr04	irgsp1_rep	CDS	27814202	27815438	.	-	0	Parent=Os04t0555600-01
Chr04	irgsp1_rep	CDS	27812604	27813385	.	-	2	Parent=Os04t0555600-01
Chr04	irgsp1_rep	CDS	27811157	27811879	.	-	0	Parent=Os04t0555600-01
Chr04	irgsp1_rep	CDS	27810530	27810664	.	-	0	Parent=Os04t0555600-01
Chr04	irgsp1_rep	CDS	27809433	27809537	.	-	0	Parent=Os04t0555600-01
Chr04	irgsp1_rep	CDS	27809208	27809322	.	-	0	Parent=Os04t0555600-01
Chr04	irgsp1_rep	CDS	27808978	27809053	.	-	2	Parent=Os04t0555600-01
Chr04	irgsp1_rep	CDS	27808677	27808758	.	-	1	Parent=Os04t0555600-01
Chr04	irgsp1_rep	CDS	27807821	27808153	.	-	0	Parent=Os04t0555600-01
Chr04	irgsp1_rep	CDS	27806814	27807080	.	-	0	Parent=Os04t0555600-01
Chr04	irgsp1_rep	mRNA	27819155	27820134	.	-	.	ID=Os04t0555700-01;Name=Os04t0555700-01;Locus_id=Os04g0555700;CGSNL Gene Symbol=ADF6;CGSNL Gene Name=ACTIN DEPOLYMERIZING FACTOR 6;Oryzabase Gene Symbol Synonym(s)=OsADF6;Oryzabase Gene Name Synonym(s)=actin depolymerizing factor 6;Note=Similar to Actin-depolymerizing factor (ADF).;Transcript_evidence=AK069329 (DDBJ%2C Best hit);ORF_evidence=Q7XSN9 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: actin binding (GO:0003779);InterPro=Actin-binding%2C cofilin/tropomyosin type (IPR002108);NIAS_FLcDNA=J023018P16;Oryzabase=12505;Expression=AK069329;TENOR=Os04t0555700-01;KEGG=Os04t0555700-01
Chr04	irgsp1_rep	five_prime_UTR	27820050	27820134	.	-	.	Parent=Os04t0555700-01
Chr04	irgsp1_rep	CDS	27820047	27820049	.	-	0	Parent=Os04t0555700-01
Chr04	irgsp1_rep	CDS	27819693	27819958	.	-	0	Parent=Os04t0555700-01
Chr04	irgsp1_rep	CDS	27819427	27819577	.	-	1	Parent=Os04t0555700-01
Chr04	irgsp1_rep	three_prime_UTR	27819155	27819426	.	-	.	Parent=Os04t0555700-01
Chr04	irgsp1_rep	mRNA	27820669	27823138	.	-	.	ID=Os04t0555800-01;Name=Os04t0555800-01;Locus_id=Os04g0555800;Note=Similar to Actin depolymerizing factor.;Transcript_evidence=AK110843 (DDBJ%2C Best hit);ORF_evidence=B9FGI5 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Zinc finger%2C CCHC retroviral-type (IPR013084);NIAS_FLcDNA=002-172-B08;Expression=AK110843;TENOR=Os04t0555800-01;KEGG=Os04t0555800-01
Chr04	irgsp1_rep	five_prime_UTR	27823108	27823138	.	-	.	Parent=Os04t0555800-01
Chr04	irgsp1_rep	CDS	27822733	27823107	.	-	0	Parent=Os04t0555800-01
Chr04	irgsp1_rep	three_prime_UTR	27822123	27822732	.	-	.	Parent=Os04t0555800-01
Chr04	irgsp1_rep	three_prime_UTR	27821915	27822006	.	-	.	Parent=Os04t0555800-01
Chr04	irgsp1_rep	three_prime_UTR	27821647	27821740	.	-	.	Parent=Os04t0555800-01
Chr04	irgsp1_rep	three_prime_UTR	27820669	27821023	.	-	.	Parent=Os04t0555800-01
Chr04	irgsp1_rep	mRNA	27823815	27826495	.	-	.	ID=Os04t0555900-01;Name=Os04t0555900-01;Locus_id=Os04g0555900;Oryzabase Gene Symbol Synonym(s)=SerR;Oryzabase Gene Name Synonym(s)=serine racemase;Note=Pyridoxal phosphate-dependent enzyme%2C beta subunit domain containing protein.;Transcript_evidence=AK063168 (DDBJ%2C Best hit);ORF_evidence=A5HUN0 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent enzyme%2C beta subunit (IPR001926);NIAS_FLcDNA=001-110-B03;Oryzabase=14739;Expression=AK063168;TENOR=Os04t0555900-01;KEGG=Os04t0555900-01 (EC:5.1.1.18)
Chr04	irgsp1_rep	five_prime_UTR	27826454	27826495	.	-	.	Parent=Os04t0555900-01
Chr04	irgsp1_rep	five_prime_UTR	27826157	27826162	.	-	.	Parent=Os04t0555900-01
Chr04	irgsp1_rep	CDS	27825966	27826156	.	-	0	Parent=Os04t0555900-01
Chr04	irgsp1_rep	CDS	27825769	27825855	.	-	1	Parent=Os04t0555900-01
Chr04	irgsp1_rep	CDS	27825441	27825671	.	-	1	Parent=Os04t0555900-01
Chr04	irgsp1_rep	CDS	27824762	27824835	.	-	1	Parent=Os04t0555900-01
Chr04	irgsp1_rep	CDS	27824487	27824673	.	-	2	Parent=Os04t0555900-01
Chr04	irgsp1_rep	CDS	27824020	27824269	.	-	1	Parent=Os04t0555900-01
Chr04	irgsp1_rep	three_prime_UTR	27823815	27824019	.	-	.	Parent=Os04t0555900-01
Chr04	irgsp1_rep	mRNA	27829841	27835486	.	+	.	ID=Os04t0556000-01;Name=Os04t0556000-01;Locus_id=Os04g0556000;RAP-DB Gene Symbol Synonym(s)=HMA5%2C OsHMA8%2C OsHMA5%2C HMA8;RAP-DB Gene Name Synonym(s)=HEAVY METAL ATPASE 5%2C heavy metal ATPase 8%2C heavy metal ATPase 5%2C heavy metal P-type ATPase 5;CGSNL Gene Symbol=HMA5;CGSNL Gene Name=HEAVY METAL ATPASE 5;Oryzabase Gene Symbol Synonym(s)=OsHMA8%2C osHMA5%2C HMA8%2C OsHMP27%2C HMP27;Oryzabase Gene Name Synonym(s)=heavy metal ATPase 8%2C heavy metal ATPase 5%2C heavy metal P-Type ATPase 5%2C Heavy metal-associated protein 27;Note=Heavy metal P-type ATPase%2C Xylem loading of copper;Transcript_evidence=AK072990;ORF_evidence=A3AWA4;GO=Biological Process: cation transport (GO:0006812),Biological Process: metal ion transport (GO:0030001),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: copper ion binding (GO:0005507),Molecular Function: cation-transporting ATPase activity (GO:0019829),Molecular Function: metal ion binding (GO:0046872),Cellular Component: integral component of membrane (GO:0016021);InterPro=P-type ATPase (IPR001757),P-type ATPase%2C subfamily IB (IPR027256),Heavy metal-associated domain%2C HMA (IPR006121),Heavy metal-associated domain%2C copper ion-binding (IPR006122),P-type ATPase%2C A  domain (IPR008250),HAD-like domain (IPR023214),P-type ATPase%2C cytoplasmic domain N (IPR023299),Heavy-metal-associated%2C conserved site (IPR017969),P-type ATPase%2C phosphorylation site (IPR018303);NIAS_FLcDNA=J023144D18;Manual Curation=November 18%2C 2013;Literature_PMID=24064929;Oryzabase=13011;TENOR=Os04t0556000-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	27829841	27829864	.	+	.	Parent=Os04t0556000-01
Chr04	irgsp1_rep	CDS	27829865	27830239	.	+	0	Parent=Os04t0556000-01
Chr04	irgsp1_rep	CDS	27832163	27833554	.	+	0	Parent=Os04t0556000-01
Chr04	irgsp1_rep	CDS	27833632	27833886	.	+	0	Parent=Os04t0556000-01
Chr04	irgsp1_rep	CDS	27833968	27834090	.	+	0	Parent=Os04t0556000-01
Chr04	irgsp1_rep	CDS	27834365	27834841	.	+	0	Parent=Os04t0556000-01
Chr04	irgsp1_rep	CDS	27834938	27835324	.	+	0	Parent=Os04t0556000-01
Chr04	irgsp1_rep	three_prime_UTR	27835325	27835486	.	+	.	Parent=Os04t0556000-01
Chr04	irgsp1_rep	mRNA	27833064	27835533	.	+	.	ID=Os04t0556000-02;Name=Os04t0556000-02;Locus_id=Os04g0556000;CGSNL Gene Symbol=HMA5;CGSNL Gene Name=HEAVY METAL ATPASE 5;Oryzabase Gene Symbol Synonym(s)=OsHMA8%2C osHMA5%2C HMA8%2C OsHMP27%2C HMP27;Oryzabase Gene Name Synonym(s)=heavy metal ATPase 8%2C heavy metal ATPase 5%2C heavy metal P-Type ATPase 5%2C Heavy metal-associated protein 27;Note=Similar to heavy metal ATPase.;Transcript_evidence=AK063759 (DDBJ%2C Best hit);ORF_evidence=XP_002303580.1 (RefSeq);GO=Biological Process: ATP biosynthetic process (GO:0006754),Biological Process: cation transport (GO:0006812),Biological Process: metabolic process (GO:0008152),Biological Process: metal ion transport (GO:0030001),Biological Process: copper ion export (GO:0060003),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: copper-exporting ATPase activity (GO:0004008),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662),Molecular Function: metal ion binding (GO:0046872);InterPro=ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),Haloacid dehalogenase-like hydrolase (IPR005834),ATPase%2C P type%2C cation/copper-transporter (IPR006403),ATPase%2C P-type%2C heavy metal translocating (IPR006416),ATPase%2C P-type%2C ATPase-associated domain (IPR008250),ATPase%2C P-type phosphorylation site (IPR018303),HAD-like domain (IPR023214),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C  P-type%2C cytoplasmic transduction domain A (IPR023300);NIAS_FLcDNA=001-121-A10;Oryzabase=13011;TENOR=Os04t0556000-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	27833064	27833065	.	+	.	Parent=Os04t0556000-02
Chr04	irgsp1_rep	CDS	27833066	27833554	.	+	0	Parent=Os04t0556000-02
Chr04	irgsp1_rep	CDS	27833632	27833886	.	+	0	Parent=Os04t0556000-02
Chr04	irgsp1_rep	CDS	27833968	27834090	.	+	0	Parent=Os04t0556000-02
Chr04	irgsp1_rep	CDS	27834365	27834841	.	+	0	Parent=Os04t0556000-02
Chr04	irgsp1_rep	CDS	27834938	27835324	.	+	0	Parent=Os04t0556000-02
Chr04	irgsp1_rep	three_prime_UTR	27835325	27835533	.	+	.	Parent=Os04t0556000-02
Chr04	irgsp1_rep	mRNA	27836613	27838008	.	-	.	ID=Os04t0556100-01;Name=Os04t0556100-01;Locus_id=Os04g0556100;Note=Conserved hypothetical protein.;Transcript_evidence=AK109622 (DDBJ%2C Best hit);ORF_evidence=Q5Z5C8 (UniProt);NIAS_FLcDNA=002-138-A09;TENOR=Os04t0556100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	27837201	27838008	.	-	.	Parent=Os04t0556100-01
Chr04	irgsp1_rep	CDS	27837066	27837200	.	-	0	Parent=Os04t0556100-01
Chr04	irgsp1_rep	three_prime_UTR	27836613	27837065	.	-	.	Parent=Os04t0556100-01
Chr04	irgsp1_rep	mRNA	27838701	27840702	.	+	.	ID=Os04t0556300-01;Name=Os04t0556300-01;Locus_id=Os04g0556300;CGSNL Gene Symbol=GPX1;CGSNL Gene Name=GLUTATHIONE PEROXIDASE 1;Oryzabase Gene Symbol Synonym(s)=OsGpx1%2C GPX1%2C OsGPx01%2C OsGPX1;Oryzabase Gene Name Synonym(s)=glutathione peroxidase 1;Note=Glutathione peroxidase.;Transcript_evidence=AK062772 (DDBJ%2C Best hit);ORF_evidence=Q8L8G3 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: glutathione peroxidase activity (GO:0004602);InterPro=Glutathione peroxidase (IPR000889),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=001-107-A04;Oryzabase=13456;Expression=AK062772;TENOR=Os04t0556300-01;KEGG=Os04t0556300-01 (EC:1.11.1.12)
Chr04	irgsp1_rep	five_prime_UTR	27838701	27838818	.	+	.	Parent=Os04t0556300-01
Chr04	irgsp1_rep	CDS	27838819	27838866	.	+	0	Parent=Os04t0556300-01
Chr04	irgsp1_rep	CDS	27839108	27839184	.	+	0	Parent=Os04t0556300-01
Chr04	irgsp1_rep	CDS	27839698	27839759	.	+	1	Parent=Os04t0556300-01
Chr04	irgsp1_rep	CDS	27839978	27840096	.	+	2	Parent=Os04t0556300-01
Chr04	irgsp1_rep	CDS	27840233	27840400	.	+	0	Parent=Os04t0556300-01
Chr04	irgsp1_rep	CDS	27840488	27840520	.	+	0	Parent=Os04t0556300-01
Chr04	irgsp1_rep	three_prime_UTR	27840521	27840702	.	+	.	Parent=Os04t0556300-01
Chr04	irgsp1_rep	mRNA	27839734	27840702	.	+	.	ID=Os04t0556300-02;Name=Os04t0556300-02;Locus_id=Os04g0556300;CGSNL Gene Symbol=GPX1;CGSNL Gene Name=GLUTATHIONE PEROXIDASE 1;Oryzabase Gene Symbol Synonym(s)=OsGpx1%2C GPX1%2C OsGPx01%2C OsGPX1;Oryzabase Gene Name Synonym(s)=glutathione peroxidase 1;Note=Similar to Glutathione peroxidase.;Transcript_evidence=AK058931 (DDBJ%2C Best hit);ORF_evidence=Q8L8G3 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: glutathione peroxidase activity (GO:0004602);InterPro=Glutathione peroxidase (IPR000889),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=001-009-D04;Oryzabase=13456;Expression=AK058931;TENOR=Os04t0556300-02;KEGG=Os04t0556300-02 (EC:1.11.1.12)
Chr04	irgsp1_rep	five_prime_UTR	27839734	27839734	.	+	.	Parent=Os04t0556300-02
Chr04	irgsp1_rep	CDS	27839735	27839759	.	+	0	Parent=Os04t0556300-02
Chr04	irgsp1_rep	CDS	27839978	27840096	.	+	2	Parent=Os04t0556300-02
Chr04	irgsp1_rep	CDS	27840233	27840400	.	+	0	Parent=Os04t0556300-02
Chr04	irgsp1_rep	CDS	27840488	27840520	.	+	0	Parent=Os04t0556300-02
Chr04	irgsp1_rep	three_prime_UTR	27840521	27840702	.	+	.	Parent=Os04t0556300-02
Chr04	irgsp1_rep	mRNA	27839106	27840400	.	-	.	ID=Os04t0556350-00;Name=Os04t0556350-00;Locus_id=Os04g0556350;Note=Hypothetical protein.;Transcript_evidence=AF366451 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0556350-00
Chr04	irgsp1_rep	five_prime_UTR	27840313	27840400	.	-	.	Parent=Os04t0556350-00
Chr04	irgsp1_rep	CDS	27840251	27840312	.	-	0	Parent=Os04t0556350-00
Chr04	irgsp1_rep	CDS	27839947	27840112	.	-	1	Parent=Os04t0556350-00
Chr04	irgsp1_rep	three_prime_UTR	27839921	27839946	.	-	.	Parent=Os04t0556350-00
Chr04	irgsp1_rep	three_prime_UTR	27839106	27839196	.	-	.	Parent=Os04t0556350-00
Chr04	irgsp1_rep	mRNA	27843255	27845708	.	-	.	ID=Os04t0556400-01;Name=Os04t0556400-01;Locus_id=Os04g0556400;CGSNL Gene Symbol=UGT93B;CGSNL Gene Name=UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 93B;Oryzabase Gene Symbol Synonym(s)=OsUGT93B;Oryzabase Gene Name Synonym(s)=UDP-glucose-dependent glycosyltransferase 93B;Note=Similar to UDP-glycosyltransferase UGT93B9.;Transcript_evidence=AK101107 (DDBJ%2C Best hit);ORF_evidence=C4MF51 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J033025D23;Oryzabase=22821;TENOR=Os04t0556400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	27845693	27845708	.	-	.	Parent=Os04t0556400-01
Chr04	irgsp1_rep	CDS	27844568	27845692	.	-	0	Parent=Os04t0556400-01
Chr04	irgsp1_rep	three_prime_UTR	27843255	27844567	.	-	.	Parent=Os04t0556400-01
Chr04	irgsp1_rep	mRNA	27848596	27850314	.	-	.	ID=Os04t0556500-01;Name=Os04t0556500-01;Locus_id=Os04g0556500;RAP-DB Gene Symbol Synonym(s)=CZOGT1%2C OscZOGT1%2C cZOGT1;RAP-DB Gene Name Synonym(s)=CIS-ZEATIN O-GLUCOSYLTRANSFERASE 1%2C cis-zeatin O-glucosyltransferase 1%2C cZ-O-glucosyltransferase 1;CGSNL Gene Symbol=CZOGT1;CGSNL Gene Name=CIS-ZEATIN O-GLUCOSYLTRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=OscZOGT1%2C cZOGT1;Oryzabase Gene Name Synonym(s)=cis-zeatin O-glucosyltransferase 1%2C cZ-O-glucosyltransferase 1;Note=cis-Zeatin-O-glucosyltransferase%2C Catalyze O-glucosylation of cZ and cZ-riboside;Transcript_evidence=AK120794;ORF_evidence=Q7XU03;GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J023012B12;Manual Curation=August 22%2C 2014;Literature_PMID=22811434;Oryzabase=20406;TENOR=Os04t0556500-01;KEGG=Os04t0556500-01 (EC:2.4.1.215)
Chr04	irgsp1_rep	five_prime_UTR	27850253	27850314	.	-	.	Parent=Os04t0556500-01
Chr04	irgsp1_rep	CDS	27848861	27850252	.	-	0	Parent=Os04t0556500-01
Chr04	irgsp1_rep	three_prime_UTR	27848596	27848860	.	-	.	Parent=Os04t0556500-01
Chr04	irgsp1_rep	mRNA	27853509	27854879	.	+	.	ID=Os04t0556550-00;Name=Os04t0556550-00;Locus_id=Os04g0556550;Note=Conserved hypothetical protein.;Transcript_evidence=AK356492 (DDBJ);ORF_evidence=F2CXY8 (UniProt);TENOR=Os04t0556550-00
Chr04	irgsp1_rep	five_prime_UTR	27853509	27853650	.	+	.	Parent=Os04t0556550-00
Chr04	irgsp1_rep	CDS	27853651	27854061	.	+	0	Parent=Os04t0556550-00
Chr04	irgsp1_rep	three_prime_UTR	27854062	27854879	.	+	.	Parent=Os04t0556550-00
Chr04	irgsp1_rep	mRNA	27853304	27854961	.	-	.	ID=Os04t0556600-01;Name=Os04t0556600-01;Locus_id=Os04g0556600;RAP-DB Gene Symbol Synonym(s)=CZOGT2%2C OscZOGT2%2C cZOGT2;RAP-DB Gene Name Synonym(s)=CIS-ZEATIN O-GLUCOSYLTRANSFERASE 2%2C cis-zeatin O-glucosyltransferase 2%2C cZ-O-glucosyltransferase 2;CGSNL Gene Symbol=CZOGT2;CGSNL Gene Name=CIS-ZEATIN O-GLUCOSYLTRANSFERASE 2;Oryzabase Gene Symbol Synonym(s)=OscZOGT2%2C cZOGT2;Oryzabase Gene Name Synonym(s)=cis-zeatin O-glucosyltransferase 2%2C cZ-O-glucosyltransferase 2;Note=cis-Zeatin-O-glucosyltransferase%2C Catalyze O-glucosylation of cZ and cZ-riboside;Transcript_evidence=NM_001060062;ORF_evidence=Q7XU02;GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);Manual Curation=August 22%2C 2014;Literature_PMID=22811434;Oryzabase=20407;TENOR=Os04t0556600-00
Chr04	irgsp1_rep	five_prime_UTR	27854901	27854961	.	-	.	Parent=Os04t0556600-01
Chr04	irgsp1_rep	CDS	27853509	27854900	.	-	0	Parent=Os04t0556600-01
Chr04	irgsp1_rep	three_prime_UTR	27853304	27853508	.	-	.	Parent=Os04t0556600-01
Chr04	irgsp1_rep	mRNA	27864116	27866585	.	-	.	ID=Os04t0556900-01;Name=Os04t0556900-01;Locus_id=Os04g0556900;Note=Similar to OSIGBa0137D06.4 protein.;Transcript_evidence=AK064112 (DDBJ%2C Best hit);ORF_evidence=Q01IN7 (UniProt);NIAS_FLcDNA=002-101-H05;Expression=AK064112;TENOR=Os04t0556900-01;KEGG=Os04t0556900-01
Chr04	irgsp1_rep	five_prime_UTR	27866544	27866585	.	-	.	Parent=Os04t0556900-01
Chr04	irgsp1_rep	CDS	27866334	27866543	.	-	0	Parent=Os04t0556900-01
Chr04	irgsp1_rep	CDS	27865628	27865682	.	-	0	Parent=Os04t0556900-01
Chr04	irgsp1_rep	CDS	27864482	27864882	.	-	2	Parent=Os04t0556900-01
Chr04	irgsp1_rep	three_prime_UTR	27864116	27864481	.	-	.	Parent=Os04t0556900-01
Chr04	irgsp1_rep	mRNA	27868084	27870370	.	+	.	ID=Os04t0557000-01;Name=Os04t0557000-01;Locus_id=Os04g0557000;Note=Similar to Genetic modifier.;Transcript_evidence=AK067832 (DDBJ%2C Best hit);ORF_evidence=Q01IN6 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity (GO:0016787);InterPro=Haloacid dehalogenase-like hydrolase (IPR005834),HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 (IPR006402),HAD-like domain (IPR023214);NIAS_FLcDNA=J013121O07;Expression=AK067832;TENOR=Os04t0557000-01;KEGG=Os04t0557000-01
Chr04	irgsp1_rep	five_prime_UTR	27868084	27868201	.	+	.	Parent=Os04t0557000-01
Chr04	irgsp1_rep	five_prime_UTR	27868993	27869040	.	+	.	Parent=Os04t0557000-01
Chr04	irgsp1_rep	CDS	27869041	27870093	.	+	0	Parent=Os04t0557000-01
Chr04	irgsp1_rep	three_prime_UTR	27870094	27870370	.	+	.	Parent=Os04t0557000-01
Chr04	irgsp1_rep	mRNA	27881155	27890773	.	-	.	ID=Os04t0557200-01;Name=Os04t0557200-01;Locus_id=Os04g0557200;Oryzabase Gene Symbol Synonym(s)=OsbHLH015%2C OsbHLH15%2C bHLH15%2C OsGL3B%2C GL3B%2C OsMYC6%2C MYC6;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 015%2C GLABRA3B%2C GLABRA 3B%2C Myelocytomatosis oncogene transcription factor 6;Note=Similar to Anthocyanin regulatory B protein (Fragment).;Transcript_evidence=AK111704 (DDBJ%2C Best hit);ORF_evidence=Q01IN4 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J023013E24;Oryzabase=15307;Expression=AK111704;TENOR=Os04t0557200-01;KEGG=Os04t0557200-01
Chr04	irgsp1_rep	five_prime_UTR	27890681	27890773	.	-	.	Parent=Os04t0557200-01
Chr04	irgsp1_rep	five_prime_UTR	27889660	27889699	.	-	.	Parent=Os04t0557200-01
Chr04	irgsp1_rep	CDS	27889523	27889659	.	-	0	Parent=Os04t0557200-01
Chr04	irgsp1_rep	CDS	27886700	27886954	.	-	1	Parent=Os04t0557200-01
Chr04	irgsp1_rep	CDS	27886351	27886447	.	-	1	Parent=Os04t0557200-01
Chr04	irgsp1_rep	CDS	27886137	27886151	.	-	0	Parent=Os04t0557200-01
Chr04	irgsp1_rep	CDS	27885741	27885797	.	-	0	Parent=Os04t0557200-01
Chr04	irgsp1_rep	CDS	27881949	27882623	.	-	0	Parent=Os04t0557200-01
Chr04	irgsp1_rep	CDS	27881488	27881862	.	-	0	Parent=Os04t0557200-01
Chr04	irgsp1_rep	CDS	27881322	27881390	.	-	0	Parent=Os04t0557200-01
Chr04	irgsp1_rep	three_prime_UTR	27881155	27881321	.	-	.	Parent=Os04t0557200-01
Chr04	irgsp1_rep	mRNA	27900983	27901048	.	+	.	ID=Os04t0557400-00;Name=Os04t0557400-00;Locus_id=Os04g0557400;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0557400-00
Chr04	irgsp1_rep	exon	27900983	27901048	.	+	.	Parent=Os04t0557400-00
Chr04	irgsp1_rep	mRNA	27915598	27939357	.	-	.	ID=Os04t0557500-01;Name=Os04t0557500-01;Locus_id=Os04g0557500;RAP-DB Gene Symbol Synonym(s)=Kala4%2C OSB2;CGSNL Gene Symbol=PL;CGSNL Gene Name=PURPLE LEAF;Oryzabase Gene Symbol Synonym(s)=Pl%2C Pl1%2C OsbHLH016%2C Kala4%2C OSB2%2C OsB2;Oryzabase Gene Name Synonym(s)=Purple leaf%2C Purple leaf-1%2C "basic helix-loop-helix protein 016%2C Key gene for black coloration by anthocyanin accumulation on Chromosome 4";Note=bHLH transcription factor%2C Homolog of the maize R/B gene%2C Regulation of anthocyanin pigmentation;Transcript_evidence=AB021080;ORF_evidence=Q948Y2;InterPro=Transcription factor MYC/MYB N-terminal (IPR025610);Manual Curation=June 21%2C 2018;Literature_PMID=26362607,11577193;Oryzabase=15308,632;TENOR=Os04t0557500-00
Chr04	irgsp1_rep	five_prime_UTR	27939320	27939357	.	-	.	Parent=Os04t0557500-01
Chr04	irgsp1_rep	CDS	27939183	27939319	.	-	0	Parent=Os04t0557500-01
Chr04	irgsp1_rep	CDS	27932416	27932670	.	-	1	Parent=Os04t0557500-01
Chr04	irgsp1_rep	CDS	27931656	27931753	.	-	1	Parent=Os04t0557500-01
Chr04	irgsp1_rep	CDS	27931407	27931421	.	-	2	Parent=Os04t0557500-01
Chr04	irgsp1_rep	CDS	27931256	27931293	.	-	2	Parent=Os04t0557500-01
Chr04	irgsp1_rep	three_prime_UTR	27931237	27931255	.	-	.	Parent=Os04t0557500-01
Chr04	irgsp1_rep	three_prime_UTR	27916193	27916849	.	-	.	Parent=Os04t0557500-01
Chr04	irgsp1_rep	three_prime_UTR	27915598	27916115	.	-	.	Parent=Os04t0557500-01
Chr04	irgsp1_rep	mRNA	27949384	27955640	.	-	.	ID=Os04t0557800-00;Name=Os04t0557800-00;Locus_id=Os04g0557800;CGSNL Gene Symbol=PL%2C RA;CGSNL Gene Name=PURPLE LEAF%2C TRANSCRIPTIONAL ACTIVATOR A;Oryzabase Gene Symbol Synonym(s)=Pl%2C Pl1%2C Ra*%2C bhlh13%2C OsbHLH013%2C OsbHLH13%2C Ra%2C OSB1%2C Ra1%2C OsGL3A%2C GL3A%2C OsB2%2C OsMYC7%2C MYC7;Oryzabase Gene Name Synonym(s)=Purple leaf%2C Purple leaf-1%2C Rice R gene (Anthocyanin biosynthesis) : a%2C basic helix loop helix 13%2C Rice R gene (Anthocyanin biosynthesis)-a%2C GLABRA3A%2C GLABRA 3A%2C Myelocytomatosis oncogene transcription factor 7;Note=Similar to R-type basic helix-loop-helix protein.;Transcript_evidence=U39860 (DDBJ%2C Best hit);ORF_evidence=Q948Y3 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);Oryzabase=2063,632;TENOR=Os04t0557800-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	27955496	27955640	.	-	.	Parent=Os04t0557800-00
Chr04	irgsp1_rep	five_prime_UTR	27955304	27955387	.	-	.	Parent=Os04t0557800-00
Chr04	irgsp1_rep	five_prime_UTR	27955232	27955295	.	-	.	Parent=Os04t0557800-00
Chr04	irgsp1_rep	five_prime_UTR	27955061	27955163	.	-	.	Parent=Os04t0557800-00
Chr04	irgsp1_rep	five_prime_UTR	27954612	27954669	.	-	.	Parent=Os04t0557800-00
Chr04	irgsp1_rep	CDS	27954496	27954611	.	-	0	Parent=Os04t0557800-00
Chr04	irgsp1_rep	CDS	27953905	27954159	.	-	1	Parent=Os04t0557800-00
Chr04	irgsp1_rep	CDS	27952247	27952343	.	-	1	Parent=Os04t0557800-00
Chr04	irgsp1_rep	CDS	27952001	27952015	.	-	0	Parent=Os04t0557800-00
Chr04	irgsp1_rep	CDS	27951535	27951594	.	-	0	Parent=Os04t0557800-00
Chr04	irgsp1_rep	CDS	27950563	27951300	.	-	0	Parent=Os04t0557800-00
Chr04	irgsp1_rep	CDS	27949864	27950274	.	-	0	Parent=Os04t0557800-00
Chr04	irgsp1_rep	CDS	27949702	27949734	.	-	0	Parent=Os04t0557800-00
Chr04	irgsp1_rep	three_prime_UTR	27949384	27949701	.	-	.	Parent=Os04t0557800-00
Chr04	irgsp1_rep	mRNA	27980869	27982048	.	-	.	ID=Os04t0558200-00;Name=Os04t0558200-00;Locus_id=Os04g0558200;Oryzabase Gene Symbol Synonym(s)=OsSTA130;Note=Cactin%2C domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XPS1 (UniProt);InterPro=Cactin%2C domain (IPR018816),Cactin protein%2C cactus-binding domain%2C C-terminal (IPR019134);Oryzabase=19419;TENOR=Os04t0558200-00
Chr04	irgsp1_rep	CDS	27981675	27982048	.	-	0	Parent=Os04t0558200-00
Chr04	irgsp1_rep	CDS	27980869	27981631	.	-	1	Parent=Os04t0558200-00
Chr04	irgsp1_rep	mRNA	27984142	27990550	.	+	.	ID=Os04t0558400-01;Name=Os04t0558400-01;Locus_id=Os04g0558400;Note=RmlC-like jelly roll fold domain containing protein.;Transcript_evidence=AK102197 (DDBJ%2C Best hit),AK061440 (DDBJ%2C Best hit);ORF_evidence=E5F4N4 (UniProt);GO=Biological Process: acyl-CoA metabolic process (GO:0006637),Molecular Function: acyl-CoA thioesterase activity (GO:0016291);InterPro=Cyclic nucleotide-binding domain (IPR000595),Acyl-CoA thioesterase (IPR003703),RmlC-like jelly roll fold (IPR014710),Cyclic nucleotide-binding-like (IPR018490);NIAS_FLcDNA=J033087D05,006-307-C01;Expression=AK102197;TENOR=Os04t0558400-01;KEGG=Os04t0558400-01
Chr04	irgsp1_rep	five_prime_UTR	27984142	27984281	.	+	.	Parent=Os04t0558400-01
Chr04	irgsp1_rep	CDS	27984282	27984297	.	+	0	Parent=Os04t0558400-01
Chr04	irgsp1_rep	CDS	27984373	27984465	.	+	2	Parent=Os04t0558400-01
Chr04	irgsp1_rep	CDS	27985164	27985231	.	+	2	Parent=Os04t0558400-01
Chr04	irgsp1_rep	CDS	27985697	27985778	.	+	0	Parent=Os04t0558400-01
Chr04	irgsp1_rep	CDS	27985913	27985959	.	+	2	Parent=Os04t0558400-01
Chr04	irgsp1_rep	CDS	27986069	27986194	.	+	0	Parent=Os04t0558400-01
Chr04	irgsp1_rep	CDS	27986573	27986648	.	+	0	Parent=Os04t0558400-01
Chr04	irgsp1_rep	CDS	27987157	27987246	.	+	2	Parent=Os04t0558400-01
Chr04	irgsp1_rep	CDS	27987642	27987754	.	+	2	Parent=Os04t0558400-01
Chr04	irgsp1_rep	CDS	27988696	27988758	.	+	0	Parent=Os04t0558400-01
Chr04	irgsp1_rep	CDS	27988830	27988885	.	+	0	Parent=Os04t0558400-01
Chr04	irgsp1_rep	CDS	27989222	27989314	.	+	1	Parent=Os04t0558400-01
Chr04	irgsp1_rep	CDS	27989578	27989634	.	+	1	Parent=Os04t0558400-01
Chr04	irgsp1_rep	CDS	27989711	27989812	.	+	1	Parent=Os04t0558400-01
Chr04	irgsp1_rep	CDS	27989898	27989946	.	+	1	Parent=Os04t0558400-01
Chr04	irgsp1_rep	CDS	27990038	27990106	.	+	0	Parent=Os04t0558400-01
Chr04	irgsp1_rep	CDS	27990206	27990292	.	+	0	Parent=Os04t0558400-01
Chr04	irgsp1_rep	three_prime_UTR	27990293	27990550	.	+	.	Parent=Os04t0558400-01
Chr04	irgsp1_rep	mRNA	27985693	27990552	.	+	.	ID=Os04t0558400-02;Name=Os04t0558400-02;Locus_id=Os04g0558400;Note=Similar to acyl-CoA thioesterase family protein.;Transcript_evidence=AK061940 (DDBJ%2C Best hit);ORF_evidence=E5F4N4 (UniProt);GO=Biological Process: acyl-CoA metabolic process (GO:0006637),Molecular Function: acyl-CoA thioesterase activity (GO:0016291);InterPro=Acyl-CoA thioesterase (IPR003703);NIAS_FLcDNA=001-042-D09;Expression=AK061940;TENOR=Os04t0558400-02;KEGG=Os04t0558400-02
Chr04	irgsp1_rep	five_prime_UTR	27985693	27985693	.	+	.	Parent=Os04t0558400-02
Chr04	irgsp1_rep	CDS	27985694	27985778	.	+	0	Parent=Os04t0558400-02
Chr04	irgsp1_rep	CDS	27985913	27985959	.	+	2	Parent=Os04t0558400-02
Chr04	irgsp1_rep	CDS	27986069	27986194	.	+	0	Parent=Os04t0558400-02
Chr04	irgsp1_rep	CDS	27986573	27986648	.	+	0	Parent=Os04t0558400-02
Chr04	irgsp1_rep	CDS	27987157	27987246	.	+	2	Parent=Os04t0558400-02
Chr04	irgsp1_rep	CDS	27987642	27987754	.	+	2	Parent=Os04t0558400-02
Chr04	irgsp1_rep	CDS	27988696	27988758	.	+	0	Parent=Os04t0558400-02
Chr04	irgsp1_rep	CDS	27988830	27988885	.	+	0	Parent=Os04t0558400-02
Chr04	irgsp1_rep	CDS	27989222	27989314	.	+	1	Parent=Os04t0558400-02
Chr04	irgsp1_rep	CDS	27989578	27989634	.	+	1	Parent=Os04t0558400-02
Chr04	irgsp1_rep	CDS	27989711	27989812	.	+	1	Parent=Os04t0558400-02
Chr04	irgsp1_rep	CDS	27989898	27989946	.	+	1	Parent=Os04t0558400-02
Chr04	irgsp1_rep	CDS	27990038	27990106	.	+	0	Parent=Os04t0558400-02
Chr04	irgsp1_rep	CDS	27990206	27990292	.	+	0	Parent=Os04t0558400-02
Chr04	irgsp1_rep	three_prime_UTR	27990293	27990552	.	+	.	Parent=Os04t0558400-02
Chr04	irgsp1_rep	mRNA	27990856	27992378	.	-	.	ID=Os04t0558500-01;Name=Os04t0558500-01;Locus_id=Os04g0558500;Note=Hypothetical conserved gene.;Transcript_evidence=AK240843 (DDBJ%2C Best hit);ORF_evidence=B8ASW7 (UniProt);NIAS_FLcDNA=J065017H16;TENOR=Os04t0558500-01;KEGG=Os04t0558500-01
Chr04	irgsp1_rep	five_prime_UTR	27992309	27992378	.	-	.	Parent=Os04t0558500-01
Chr04	irgsp1_rep	CDS	27992059	27992308	.	-	0	Parent=Os04t0558500-01
Chr04	irgsp1_rep	CDS	27991207	27991421	.	-	2	Parent=Os04t0558500-01
Chr04	irgsp1_rep	three_prime_UTR	27990856	27991206	.	-	.	Parent=Os04t0558500-01
Chr04	irgsp1_rep	mRNA	27994902	27995820	.	-	.	ID=Os04t0558700-01;Name=Os04t0558700-01;Locus_id=Os04g0558700;Note=Conserved hypothetical protein.;Transcript_evidence=AK110633 (DDBJ%2C Best hit);ORF_evidence=B8ASW8 (UniProt);NIAS_FLcDNA=002-169-C01;Expression=AK110633;TENOR=Os04t0558700-01;KEGG=Os04t0558700-01
Chr04	irgsp1_rep	five_prime_UTR	27995779	27995820	.	-	.	Parent=Os04t0558700-01
Chr04	irgsp1_rep	CDS	27995371	27995778	.	-	0	Parent=Os04t0558700-01
Chr04	irgsp1_rep	three_prime_UTR	27994902	27995370	.	-	.	Parent=Os04t0558700-01
Chr04	irgsp1_rep	mRNA	27997197	27999958	.	+	.	ID=Os04t0558900-01;Name=Os04t0558900-01;Locus_id=Os04g0558900;Oryzabase Gene Symbol Synonym(s)=OsSub43%2C SUB43;Oryzabase Gene Name Synonym(s)=Subtilisin 43%2C SUBTILISIN 43;Note=Peptidase S8%2C subtilisin-related domain containing protein.;Transcript_evidence=AK100861 (DDBJ%2C Best hit);ORF_evidence=Q01H99 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C  Asp-active site (IPR023827),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);NIAS_FLcDNA=J023123N15;Oryzabase=20128;Expression=AK100861;TENOR=Os04t0558900-01;KEGG=Os04t0558900-01
Chr04	irgsp1_rep	five_prime_UTR	27997197	27997213	.	+	.	Parent=Os04t0558900-01
Chr04	irgsp1_rep	CDS	27997214	27999595	.	+	0	Parent=Os04t0558900-01
Chr04	irgsp1_rep	three_prime_UTR	27999596	27999958	.	+	.	Parent=Os04t0558900-01
Chr04	irgsp1_rep	mRNA	28001629	28003911	.	-	.	ID=Os04t0559000-00;Name=Os04t0559000-00;Locus_id=Os04g0559000;Oryzabase Gene Symbol Synonym(s)=OsSub44%2C SUB44;Oryzabase Gene Name Synonym(s)=Subtilisin 44%2C SUBTILISIN 44;Note=Proteinase inhibitor%2C propeptide domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A9QY38 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C  Asp-active site (IPR023827);Oryzabase=20129;TENOR=Os04t0559000-00;KEGG=Os04t0559000-00
Chr04	irgsp1_rep	CDS	28001629	28003911	.	-	0	Parent=Os04t0559000-00
Chr04	irgsp1_rep	mRNA	28015166	28015926	.	+	.	ID=Os04t0559100-00;Name=Os04t0559100-00;Locus_id=Os04g0559100;CGSNL Gene Symbol=ROPGEF9;CGSNL Gene Name=ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 9;Oryzabase Gene Symbol Synonym(s)=Os RopGEF9%2C OsRopGEF9%2C RopGEF9;Oryzabase Gene Name Synonym(s)=GEF for ROP 9%2C guanine nucleotide exchange factor for Rop 9%2C Rop-specific GEF9%2C Rop-specific guanine nucleotide exchange factor 9;Note=Similar to Pollen-specific kinase partner protein.;Transcript_evidence=CT836485 (DDBJ%2C Best hit);ORF_evidence=B4F9P8 (UniProt);GO=Molecular Function: Rho guanyl-nucleotide exchange factor activity (GO:0005089);InterPro=Plant specific Rop nucleotide exchanger%2C PRONE (IPR005512);Oryzabase=11451;TENOR=Os04t0559100-00;KEGG=Os04t0559100-00
Chr04	irgsp1_rep	five_prime_UTR	28015166	28015167	.	+	.	Parent=Os04t0559100-00
Chr04	irgsp1_rep	CDS	28015168	28015716	.	+	0	Parent=Os04t0559100-00
Chr04	irgsp1_rep	three_prime_UTR	28015717	28015926	.	+	.	Parent=Os04t0559100-00
Chr04	irgsp1_rep	mRNA	28016067	28021961	.	-	.	ID=Os04t0559200-01;Name=Os04t0559200-01;Locus_id=Os04g0559200;Note=Protein of unknown function DUF3741 domain containing protein.;Transcript_evidence=AK066088 (DDBJ%2C Best hit);ORF_evidence=Q7XPR6 (UniProt);InterPro=Protein of unknown function DUF3741 (IPR022212);NIAS_FLcDNA=J013051G09;Expression=AK066088;TENOR=Os04t0559200-01;KEGG=Os04t0559200-01
Chr04	irgsp1_rep	five_prime_UTR	28020885	28021961	.	-	.	Parent=Os04t0559200-01
Chr04	irgsp1_rep	five_prime_UTR	28020166	28020205	.	-	.	Parent=Os04t0559200-01
Chr04	irgsp1_rep	CDS	28020015	28020165	.	-	0	Parent=Os04t0559200-01
Chr04	irgsp1_rep	CDS	28019862	28019914	.	-	2	Parent=Os04t0559200-01
Chr04	irgsp1_rep	CDS	28017638	28019108	.	-	0	Parent=Os04t0559200-01
Chr04	irgsp1_rep	CDS	28017463	28017557	.	-	2	Parent=Os04t0559200-01
Chr04	irgsp1_rep	CDS	28017127	28017373	.	-	0	Parent=Os04t0559200-01
Chr04	irgsp1_rep	CDS	28016424	28017001	.	-	2	Parent=Os04t0559200-01
Chr04	irgsp1_rep	three_prime_UTR	28016067	28016423	.	-	.	Parent=Os04t0559200-01
Chr04	irgsp1_rep	mRNA	28017336	28021796	.	-	.	ID=Os04t0559200-02;Name=Os04t0559200-02;Locus_id=Os04g0559200;Note=Hypothetical conserved gene.;Transcript_evidence=AK065763 (DDBJ%2C Best hit);ORF_evidence=Q7XPR6 (UniProt);InterPro=Protein of unknown function DUF3741 (IPR022212);NIAS_FLcDNA=J013042N22;TENOR=Os04t0559200-02
Chr04	irgsp1_rep	five_prime_UTR	28020885	28021796	.	-	.	Parent=Os04t0559200-02
Chr04	irgsp1_rep	five_prime_UTR	28020166	28020205	.	-	.	Parent=Os04t0559200-02
Chr04	irgsp1_rep	CDS	28020015	28020165	.	-	0	Parent=Os04t0559200-02
Chr04	irgsp1_rep	CDS	28019862	28019914	.	-	2	Parent=Os04t0559200-02
Chr04	irgsp1_rep	CDS	28017638	28019108	.	-	0	Parent=Os04t0559200-02
Chr04	irgsp1_rep	CDS	28017463	28017557	.	-	2	Parent=Os04t0559200-02
Chr04	irgsp1_rep	CDS	28017336	28017373	.	-	0	Parent=Os04t0559200-02
Chr04	irgsp1_rep	mRNA	28016200	28018071	.	-	.	ID=Os04t0559200-03;Name=Os04t0559200-03;Locus_id=Os04g0559200;Note=Hypothetical conserved gene.;Transcript_evidence=AK062156 (DDBJ%2C Best hit);ORF_evidence=Q7XPR6 (UniProt);NIAS_FLcDNA=001-046-A03;Expression=AK062156;TENOR=Os04t0559200-03;KEGG=Os04t0559200-03
Chr04	irgsp1_rep	five_prime_UTR	28018071	28018071	.	-	.	Parent=Os04t0559200-03
Chr04	irgsp1_rep	CDS	28017638	28018070	.	-	0	Parent=Os04t0559200-03
Chr04	irgsp1_rep	CDS	28017463	28017557	.	-	2	Parent=Os04t0559200-03
Chr04	irgsp1_rep	CDS	28017127	28017373	.	-	0	Parent=Os04t0559200-03
Chr04	irgsp1_rep	CDS	28016424	28017001	.	-	2	Parent=Os04t0559200-03
Chr04	irgsp1_rep	three_prime_UTR	28016200	28016423	.	-	.	Parent=Os04t0559200-03
Chr04	irgsp1_rep	mRNA	28026584	28030509	.	-	.	ID=Os04t0559400-01;Name=Os04t0559400-01;Locus_id=Os04g0559400;Note=Similar to Branched-chain-amino-acid aminotransferase 5%2C chloroplast precursor (EC 2.6.1.42) (Atbcat-5).;Transcript_evidence=AK106376 (DDBJ%2C Best hit);ORF_evidence=B9FBX6 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: branched chain family amino acid metabolic process (GO:0009081),Molecular Function: catalytic activity (GO:0003824),Molecular Function: branched-chain-amino-acid transaminase activity (GO:0004084);InterPro=Aminotransferase%2C class IV (IPR001544),Branched-chain amino acid aminotransferase II (IPR005786),Aminotransferase%2C class IV%2C conserved site (IPR018300);NIAS_FLcDNA=002-102-D03;Expression=AK106376;TENOR=Os04t0559400-01;KEGG=Os04t0559400-01 (EC:2.6.1.42)
Chr04	irgsp1_rep	five_prime_UTR	28030314	28030509	.	-	.	Parent=Os04t0559400-01
Chr04	irgsp1_rep	CDS	28030215	28030313	.	-	0	Parent=Os04t0559400-01
Chr04	irgsp1_rep	CDS	28029990	28030093	.	-	0	Parent=Os04t0559400-01
Chr04	irgsp1_rep	CDS	28029380	28029557	.	-	1	Parent=Os04t0559400-01
Chr04	irgsp1_rep	CDS	28029068	28029244	.	-	0	Parent=Os04t0559400-01
Chr04	irgsp1_rep	CDS	28028856	28028987	.	-	0	Parent=Os04t0559400-01
Chr04	irgsp1_rep	CDS	28028676	28028774	.	-	0	Parent=Os04t0559400-01
Chr04	irgsp1_rep	CDS	28028367	28028483	.	-	0	Parent=Os04t0559400-01
Chr04	irgsp1_rep	CDS	28027914	28028009	.	-	0	Parent=Os04t0559400-01
Chr04	irgsp1_rep	CDS	28027480	28027592	.	-	0	Parent=Os04t0559400-01
Chr04	irgsp1_rep	CDS	28026940	28027057	.	-	1	Parent=Os04t0559400-01
Chr04	irgsp1_rep	three_prime_UTR	28026912	28026939	.	-	.	Parent=Os04t0559400-01
Chr04	irgsp1_rep	three_prime_UTR	28026584	28026800	.	-	.	Parent=Os04t0559400-01
Chr04	irgsp1_rep	mRNA	28026561	28027959	.	-	.	ID=Os04t0559400-02;Name=Os04t0559400-02;Locus_id=Os04g0559400;Note=Similar to Branched-chain-amino-acid aminotransferase.;Transcript_evidence=AK062472 (DDBJ%2C Best hit);ORF_evidence=B9FBX6 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: branched chain family amino acid metabolic process (GO:0009081),Molecular Function: catalytic activity (GO:0003824),Molecular Function: branched-chain-amino-acid transaminase activity (GO:0004084);InterPro=Aminotransferase%2C class IV (IPR001544),Branched-chain amino acid aminotransferase II (IPR005786);NIAS_FLcDNA=001-103-E12;Expression=AK062472;TENOR=Os04t0559400-02;KEGG=Os04t0559400-02 (EC:2.6.1.42)
Chr04	irgsp1_rep	five_prime_UTR	28027959	28027959	.	-	.	Parent=Os04t0559400-02
Chr04	irgsp1_rep	CDS	28027914	28027958	.	-	0	Parent=Os04t0559400-02
Chr04	irgsp1_rep	CDS	28027480	28027592	.	-	0	Parent=Os04t0559400-02
Chr04	irgsp1_rep	CDS	28026940	28027057	.	-	1	Parent=Os04t0559400-02
Chr04	irgsp1_rep	three_prime_UTR	28026561	28026939	.	-	.	Parent=Os04t0559400-02
Chr04	irgsp1_rep	mRNA	28033103	28033357	.	-	.	ID=Os04t0559550-00;Name=Os04t0559550-00;Locus_id=Os04g0559550;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001174039.1 (RefSeq);TENOR=Os04t0559550-00;KEGG=Os04t0559550-00
Chr04	irgsp1_rep	CDS	28033103	28033357	.	-	0	Parent=Os04t0559550-00
Chr04	irgsp1_rep	mRNA	28046582	28048410	.	+	.	ID=Os04t0559700-01;Name=Os04t0559700-01;Locus_id=Os04g0559700;RAP-DB Gene Symbol Synonym(s)=OsPIP1%3B2;RAP-DB Gene Name Synonym(s)=Plasma membrane intrinsic protein 1%3B2;CGSNL Gene Symbol=PIP1%3B2;CGSNL Gene Name=PLASMA MEMBRANE INTRINSIC PROTEIN 1%3B2;Oryzabase Gene Symbol Synonym(s)=OsPIP1%3B2%2C PIP1-2%2C OsPIP1-2;Oryzabase Gene Name Synonym(s)=Probable aquaporin PIP1-2%2C Plasma membrane intrinsic protein 1-2;Note=Aquaporin%2C Plasma membrane intrinsic protein%2C CO<sub>2</sub> diffusion-associated photosynthesis%2C Phloem sucrose transport;Transcript_evidence=AK065188,AK098849,AK104736;ORF_evidence=Q7XSQ9;GO=Biological Process: transmembrane transport (GO:0055085),Molecular Function: channel activity (GO:0015267),Cellular Component: membrane (GO:0016020);InterPro=Aquaporin-like (IPR023271),Major intrinsic protein (IPR000425),Major intrinsic protein%2C conserved site (IPR022357);NIAS_FLcDNA=J013002E02,J013000E16,001-038-D02;Manual Curation=December 13%2C 2018;Literature_PMID=30535321;Oryzabase=8510;TENOR=Os04t0559700-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=plasma membrane (GO:0005886)
Chr04	irgsp1_rep	five_prime_UTR	28046582	28046642	.	+	.	Parent=Os04t0559700-01
Chr04	irgsp1_rep	CDS	28046643	28047272	.	+	0	Parent=Os04t0559700-01
Chr04	irgsp1_rep	CDS	28047376	28047516	.	+	0	Parent=Os04t0559700-01
Chr04	irgsp1_rep	CDS	28048078	28048173	.	+	0	Parent=Os04t0559700-01
Chr04	irgsp1_rep	three_prime_UTR	28048174	28048410	.	+	.	Parent=Os04t0559700-01
Chr04	irgsp1_rep	mRNA	28046671	28048148	.	-	.	ID=Os04t0559750-00;Name=Os04t0559750-00;Locus_id=Os04g0559750;Note=Hypothetical protein.;Transcript_evidence=FP096444 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0559750-00
Chr04	irgsp1_rep	five_prime_UTR	28048147	28048148	.	-	.	Parent=Os04t0559750-00
Chr04	irgsp1_rep	CDS	28048047	28048146	.	-	0	Parent=Os04t0559750-00
Chr04	irgsp1_rep	CDS	28047389	28047485	.	-	2	Parent=Os04t0559750-00
Chr04	irgsp1_rep	CDS	28046671	28047288	.	-	1	Parent=Os04t0559750-00
Chr04	irgsp1_rep	mRNA	28049246	28056867	.	-	.	ID=Os04t0559800-01;Name=Os04t0559800-01;Locus_id=Os04g0559800;RAP-DB Gene Symbol Synonym(s)=SMG2%2C OsMKKK10%2C MKKK10%2C SMG2/OsMKKK10;RAP-DB Gene Name Synonym(s)=small grain 2%2C MAPK kinase kinase 10;CGSNL Gene Symbol=SMG2;CGSNL Gene Name=SMALL GRAIN 2;Oryzabase Gene Symbol Synonym(s)=YDA1%2C OsMKKK10%2C MKKK10%2C SMG2/OsMKKK10%2C OsSMG2;Oryzabase Gene Name Synonym(s)=YODA 1%2C OsYODA-2%2C YODA-2%2C MAPK kinase kinase 10%2C small grain 2;Note=Mitogen-activated protein kinase (MAPK) kinase kinase 10%2C Control of grain size and weight;Transcript_evidence=AK065413;ORF_evidence=Q7XUR1;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),Protein kinase domain (IPR000719),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J013021I12;Manual Curation=June 15%2C 2020;Literature_PMID=29702261;Oryzabase=13343;Expression=AK065413;TENOR=Os04t0559800-01;KEGG=Os04t0559800-01
Chr04	irgsp1_rep	five_prime_UTR	28056669	28056867	.	-	.	Parent=Os04t0559800-01
Chr04	irgsp1_rep	five_prime_UTR	28054959	28055188	.	-	.	Parent=Os04t0559800-01
Chr04	irgsp1_rep	CDS	28054414	28054958	.	-	0	Parent=Os04t0559800-01
Chr04	irgsp1_rep	CDS	28053591	28054331	.	-	1	Parent=Os04t0559800-01
Chr04	irgsp1_rep	CDS	28053262	28053349	.	-	1	Parent=Os04t0559800-01
Chr04	irgsp1_rep	CDS	28053093	28053155	.	-	0	Parent=Os04t0559800-01
Chr04	irgsp1_rep	CDS	28052703	28052863	.	-	0	Parent=Os04t0559800-01
Chr04	irgsp1_rep	CDS	28052532	28052607	.	-	1	Parent=Os04t0559800-01
Chr04	irgsp1_rep	CDS	28052146	28052205	.	-	0	Parent=Os04t0559800-01
Chr04	irgsp1_rep	CDS	28051946	28052053	.	-	0	Parent=Os04t0559800-01
Chr04	irgsp1_rep	CDS	28051423	28051659	.	-	0	Parent=Os04t0559800-01
Chr04	irgsp1_rep	CDS	28051239	28051330	.	-	0	Parent=Os04t0559800-01
Chr04	irgsp1_rep	CDS	28050454	28050967	.	-	1	Parent=Os04t0559800-01
Chr04	irgsp1_rep	three_prime_UTR	28050261	28050453	.	-	.	Parent=Os04t0559800-01
Chr04	irgsp1_rep	three_prime_UTR	28049246	28049736	.	-	.	Parent=Os04t0559800-01
Chr04	irgsp1_rep	mRNA	28055785	28055881	.	+	.	ID=Os04t0559950-00;Name=Os04t0559950-00;Locus_id=Os04g0559950;Note=Non-protein coding transcript.;Transcript_evidence=EU942010 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0559950-00
Chr04	irgsp1_rep	exon	28055785	28055881	.	+	.	Parent=Os04t0559950-00
Chr04	irgsp1_rep	mRNA	28061538	28063632	.	-	.	ID=Os04t0560100-01;Name=Os04t0560100-01;Locus_id=Os04g0560100;CGSNL Gene Symbol=CYP86A7-1;CGSNL Gene Name=P-450 86A7-1;Oryzabase Gene Symbol Synonym(s)=CYP86A7-1%2C OsCYP86A7-1;Oryzabase Gene Name Synonym(s)=CytoChrome P450 86A7-1;Note=CytoChrome P450 family protein.;Transcript_evidence=AK106001 (DDBJ%2C Best hit);ORF_evidence=Q9FVM8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=001-205-H12;Oryzabase=18136;Expression=AK106001;TENOR=Os04t0560100-01;KEGG=Os04t0560100-01
Chr04	irgsp1_rep	five_prime_UTR	28063335	28063632	.	-	.	Parent=Os04t0560100-01
Chr04	irgsp1_rep	CDS	28061697	28063334	.	-	0	Parent=Os04t0560100-01
Chr04	irgsp1_rep	three_prime_UTR	28061538	28061696	.	-	.	Parent=Os04t0560100-01
Chr04	irgsp1_rep	mRNA	28061427	28063498	.	-	.	ID=Os04t0560100-02;Name=Os04t0560100-02;Locus_id=Os04g0560100;CGSNL Gene Symbol=CYP86A7-1;CGSNL Gene Name=P-450 86A7-1;Oryzabase Gene Symbol Synonym(s)=CYP86A7-1%2C OsCYP86A7-1;Oryzabase Gene Name Synonym(s)=CytoChrome P450 86A7-1;Note=Conserved hypothetical protein.;Transcript_evidence=AK071033 (DDBJ%2C Best hit);ORF_evidence=A3A1K1 (UniProt);NIAS_FLcDNA=J023078O09;Oryzabase=18136;TENOR=Os04t0560100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	28063398	28063498	.	-	.	Parent=Os04t0560100-02
Chr04	irgsp1_rep	CDS	28063368	28063397	.	-	0	Parent=Os04t0560100-02
Chr04	irgsp1_rep	CDS	28061641	28062765	.	-	0	Parent=Os04t0560100-02
Chr04	irgsp1_rep	three_prime_UTR	28061427	28061640	.	-	.	Parent=Os04t0560100-02
Chr04	irgsp1_rep	mRNA	28065102	28066907	.	+	.	ID=Os04t0560200-01;Name=Os04t0560200-01;Locus_id=Os04g0560200;Oryzabase Gene Name Synonym(s)=Thioredoxin-like 3-3;Note=Thioredoxin domain 2 containing protein.;Transcript_evidence=AK241774 (DDBJ%2C Best hit);ORF_evidence=NP_566982.1 (RefSeq);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Thioredoxin (IPR005746),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766);NIAS_FLcDNA=J065205N20;Oryzabase=21970;TENOR=Os04t0560200-01;KEGG=Os04t0560200-01
Chr04	irgsp1_rep	five_prime_UTR	28065102	28065227	.	+	.	Parent=Os04t0560200-01
Chr04	irgsp1_rep	five_prime_UTR	28065336	28065354	.	+	.	Parent=Os04t0560200-01
Chr04	irgsp1_rep	CDS	28065355	28065498	.	+	0	Parent=Os04t0560200-01
Chr04	irgsp1_rep	CDS	28065941	28065966	.	+	0	Parent=Os04t0560200-01
Chr04	irgsp1_rep	CDS	28066470	28066689	.	+	1	Parent=Os04t0560200-01
Chr04	irgsp1_rep	three_prime_UTR	28066690	28066907	.	+	.	Parent=Os04t0560200-01
Chr04	irgsp1_rep	mRNA	28067392	28070371	.	-	.	ID=Os04t0560300-01;Name=Os04t0560300-01;Locus_id=Os04g0560300;Oryzabase Gene Symbol Synonym(s)=OsHDMA701%2C HDMA701%2C OsPAO9%2C PAO9;Oryzabase Gene Name Synonym(s)=SWIRM domain-containing protein HDMA701%2C histone lysine-specific demethylase 701%2C polyamine oxidase 9;Note=Similar to flowering locus D.;Transcript_evidence=AK073751 (DDBJ%2C Best hit);ORF_evidence=NP_001148070.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: protein binding (GO:0005515),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Amine oxidase (IPR002937),SWIRM (IPR007526),Homeodomain-like (IPR009057),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=J033068J22;Oryzabase=12521;TENOR=Os04t0560300-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	28070310	28070371	.	-	.	Parent=Os04t0560300-01
Chr04	irgsp1_rep	CDS	28068662	28070309	.	-	0	Parent=Os04t0560300-01
Chr04	irgsp1_rep	CDS	28067548	28068335	.	-	2	Parent=Os04t0560300-01
Chr04	irgsp1_rep	three_prime_UTR	28067392	28067547	.	-	.	Parent=Os04t0560300-01
Chr04	irgsp1_rep	mRNA	28071456	28074593	.	-	.	ID=Os04t0560400-01;Name=Os04t0560400-01;Locus_id=Os04g0560400;Note=Similar to Alpha-L-fucosidase 1.;Transcript_evidence=AK287575 (DDBJ%2C Best hit);ORF_evidence=B6UDD6 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: alpha-L-fucosidase activity (GO:0004560),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 29 (IPR000933),Galactose-binding domain-like (IPR008979),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J065037C07;TENOR=Os04t0560400-01;KEGG=Os04t0560400-01
Chr04	irgsp1_rep	five_prime_UTR	28074593	28074593	.	-	.	Parent=Os04t0560400-01
Chr04	irgsp1_rep	CDS	28074048	28074592	.	-	0	Parent=Os04t0560400-01
Chr04	irgsp1_rep	CDS	28073346	28073579	.	-	1	Parent=Os04t0560400-01
Chr04	irgsp1_rep	CDS	28071603	28072374	.	-	1	Parent=Os04t0560400-01
Chr04	irgsp1_rep	three_prime_UTR	28071456	28071602	.	-	.	Parent=Os04t0560400-01
Chr04	irgsp1_rep	mRNA	28075550	28081147	.	+	.	ID=Os04t0560500-00;Name=Os04t0560500-00;Locus_id=Os04g0560500;Note=Amine oxidase domain containing protein.;Transcript_evidence=FP091877 (DDBJ);ORF_evidence=Q7XSQ6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Amine oxidase (IPR002937),Pyridine nucleotide-disulphide oxidoreductase%2C FAD/NAD(P)-binding domain (IPR023753);TENOR=Os04t0560500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	28075550	28075655	.	+	.	Parent=Os04t0560500-00
Chr04	irgsp1_rep	CDS	28075656	28075856	.	+	0	Parent=Os04t0560500-00
Chr04	irgsp1_rep	CDS	28076107	28076167	.	+	0	Parent=Os04t0560500-00
Chr04	irgsp1_rep	CDS	28076260	28076366	.	+	2	Parent=Os04t0560500-00
Chr04	irgsp1_rep	CDS	28076803	28076871	.	+	0	Parent=Os04t0560500-00
Chr04	irgsp1_rep	CDS	28076969	28077023	.	+	0	Parent=Os04t0560500-00
Chr04	irgsp1_rep	CDS	28077106	28077153	.	+	2	Parent=Os04t0560500-00
Chr04	irgsp1_rep	CDS	28077254	28077423	.	+	2	Parent=Os04t0560500-00
Chr04	irgsp1_rep	CDS	28077493	28077770	.	+	0	Parent=Os04t0560500-00
Chr04	irgsp1_rep	CDS	28077969	28078059	.	+	1	Parent=Os04t0560500-00
Chr04	irgsp1_rep	CDS	28078150	28078278	.	+	0	Parent=Os04t0560500-00
Chr04	irgsp1_rep	CDS	28078369	28078522	.	+	0	Parent=Os04t0560500-00
Chr04	irgsp1_rep	CDS	28078866	28078960	.	+	2	Parent=Os04t0560500-00
Chr04	irgsp1_rep	CDS	28079035	28079217	.	+	0	Parent=Os04t0560500-00
Chr04	irgsp1_rep	three_prime_UTR	28079218	28079283	.	+	.	Parent=Os04t0560500-00
Chr04	irgsp1_rep	three_prime_UTR	28079645	28079703	.	+	.	Parent=Os04t0560500-00
Chr04	irgsp1_rep	three_prime_UTR	28080932	28081147	.	+	.	Parent=Os04t0560500-00
Chr04	irgsp1_rep	mRNA	28079507	28082320	.	-	.	ID=Os04t0560600-01;Name=Os04t0560600-01;Locus_id=Os04g0560600;RAP-DB Gene Symbol Synonym(s)=CDPK12%2C OsCDPK12%2C OsCPK12%2C ESL4;RAP-DB Gene Name Synonym(s)=CALCIUM-DEPENDENT PROTEIN KINASE 12%2C calcium-dependent protein kinase%2C Calcium-dependent protein kinase 12%2C Early senescence leaf 4;CGSNL Gene Symbol=ESL4;CGSNL Gene Name=EARLY SENESCENCE LEAF 4;Oryzabase Gene Symbol Synonym(s)=CDPK12%2C OsCDPK12%2C OsCPK12%2C CPK12%2C OsESL4;Oryzabase Gene Name Synonym(s)=calcium-dependent protein kinase%2C Calcium-dependent protein kinase 12%2C Early senescence leaf 4;Note=Calcium-dependent protein kinase%2C Salt-stress tolerance%2C Blast disease resistance%2C Nitrogen metabolism;Transcript_evidence=AK288095;ORF_evidence=Q7XSQ5;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine/threonine/dual specificity protein kinase%2C catalytic  domain (IPR002290),EF-hand domain pair (IPR011992),EF-hand domain (IPR002048),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271),EF-Hand 1%2C calcium-binding site (IPR018247);NIAS_FLcDNA=J075191E21;Manual Curation=January 7%2C 2019;Literature_PMID=30165687,21883553,15695435;Oryzabase=8064;TENOR=Os04t0560600-01;KEGG=Os04t0560600-01 (EC:2.7.11.17);Subcellular location=cell membrane (GO:0005886)
Chr04	irgsp1_rep	five_prime_UTR	28082249	28082320	.	-	.	Parent=Os04t0560600-01
Chr04	irgsp1_rep	CDS	28081513	28082248	.	-	0	Parent=Os04t0560600-01
Chr04	irgsp1_rep	CDS	28081104	28081247	.	-	2	Parent=Os04t0560600-01
Chr04	irgsp1_rep	CDS	28080854	28081006	.	-	2	Parent=Os04t0560600-01
Chr04	irgsp1_rep	CDS	28080620	28080732	.	-	2	Parent=Os04t0560600-01
Chr04	irgsp1_rep	CDS	28080373	28080540	.	-	0	Parent=Os04t0560600-01
Chr04	irgsp1_rep	CDS	28080166	28080293	.	-	0	Parent=Os04t0560600-01
Chr04	irgsp1_rep	CDS	28079842	28079941	.	-	1	Parent=Os04t0560600-01
Chr04	irgsp1_rep	CDS	28079700	28079759	.	-	0	Parent=Os04t0560600-01
Chr04	irgsp1_rep	three_prime_UTR	28079507	28079699	.	-	.	Parent=Os04t0560600-01
Chr04	irgsp1_rep	mRNA	28084097	28085839	.	+	.	ID=Os04t0560700-01;Name=Os04t0560700-01;Locus_id=Os04g0560700;Note=Conserved hypothetical protein.;Transcript_evidence=AK120795 (DDBJ%2C Best hit);ORF_evidence=Q01H85 (UniProt);NIAS_FLcDNA=J023012D11;TENOR=Os04t0560700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	28084097	28084688	.	+	.	Parent=Os04t0560700-01
Chr04	irgsp1_rep	CDS	28084689	28084867	.	+	0	Parent=Os04t0560700-01
Chr04	irgsp1_rep	CDS	28085359	28085524	.	+	1	Parent=Os04t0560700-01
Chr04	irgsp1_rep	three_prime_UTR	28085525	28085839	.	+	.	Parent=Os04t0560700-01
Chr04	irgsp1_rep	mRNA	28091457	28092027	.	+	.	ID=Os04t0561000-00;Name=Os04t0561000-00;Locus_id=Os04g0561000;Note=Hypothetical protein.;Transcript_evidence=BT084812 (DDBJ);ORF_evidence=GeneMark;TENOR=Os04t0561000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	28091457	28092027	.	+	0	Parent=Os04t0561000-00
Chr04	irgsp1_rep	mRNA	28096346	28097626	.	-	.	ID=Os04t0561200-01;Name=Os04t0561200-01;Locus_id=Os04g0561200;Note=Similar to cellular retinaldehyde-binding/triple function%2C C-terminal.;Transcript_evidence=AK107862 (DDBJ%2C Best hit);ORF_evidence=NP_001147236.1 (RefSeq);NIAS_FLcDNA=002-134-B10;TENOR=Os04t0561200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	28097563	28097626	.	-	.	Parent=Os04t0561200-01
Chr04	irgsp1_rep	CDS	28097448	28097562	.	-	0	Parent=Os04t0561200-01
Chr04	irgsp1_rep	CDS	28097079	28097358	.	-	2	Parent=Os04t0561200-01
Chr04	irgsp1_rep	CDS	28096506	28096728	.	-	1	Parent=Os04t0561200-01
Chr04	irgsp1_rep	three_prime_UTR	28096346	28096505	.	-	.	Parent=Os04t0561200-01
Chr04	irgsp1_rep	mRNA	28108757	28113082	.	+	.	ID=Os04t0561500-01;Name=Os04t0561500-01;Locus_id=Os04g0561500;Oryzabase Gene Symbol Synonym(s)=OsPOP9%2C POP9;Oryzabase Gene Name Synonym(s)=Prolyl Oligopeptidase 9%2C PROLYL OLIGOPEPTIDASE 9;Note=Similar to Prolyl endopeptidase (EC 3.4.21.26) (Post-proline cleaving enzyme) (PE).;Transcript_evidence=AK069664 (DDBJ%2C Best hit);ORF_evidence=B6U134 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: serine-type peptidase activity (GO:0008236),Molecular Function: serine-type exopeptidase activity (GO:0070008);InterPro=Peptidase S9%2C prolyl oligopeptidase%2C catalytic domain (IPR001375),Peptidase S9A%2C prolyl oligopeptidase (IPR002470),Peptidase S9%2C serine active site (IPR002471),Peptidase S9A/B/C%2C oligopeptidase%2C N-terminal beta-propeller (IPR004106),Peptidase S9A%2C oligopeptidase%2C N-terminal (IPR023302);NIAS_FLcDNA=J023028J20;Oryzabase=20017;Expression=AK069664;TENOR=Os04t0561500-01;KEGG=Os04t0561500-01 (EC:3.4.21.26)
Chr04	irgsp1_rep	five_prime_UTR	28108757	28108888	.	+	.	Parent=Os04t0561500-01
Chr04	irgsp1_rep	CDS	28108889	28109007	.	+	0	Parent=Os04t0561500-01
Chr04	irgsp1_rep	CDS	28109835	28110057	.	+	1	Parent=Os04t0561500-01
Chr04	irgsp1_rep	CDS	28110166	28110372	.	+	0	Parent=Os04t0561500-01
Chr04	irgsp1_rep	CDS	28110459	28110529	.	+	0	Parent=Os04t0561500-01
Chr04	irgsp1_rep	CDS	28110618	28110783	.	+	1	Parent=Os04t0561500-01
Chr04	irgsp1_rep	CDS	28110909	28111508	.	+	0	Parent=Os04t0561500-01
Chr04	irgsp1_rep	CDS	28111648	28112028	.	+	0	Parent=Os04t0561500-01
Chr04	irgsp1_rep	CDS	28112117	28112192	.	+	0	Parent=Os04t0561500-01
Chr04	irgsp1_rep	CDS	28112286	28112349	.	+	2	Parent=Os04t0561500-01
Chr04	irgsp1_rep	CDS	28112448	28112580	.	+	1	Parent=Os04t0561500-01
Chr04	irgsp1_rep	CDS	28112662	28112775	.	+	0	Parent=Os04t0561500-01
Chr04	irgsp1_rep	CDS	28112859	28112924	.	+	0	Parent=Os04t0561500-01
Chr04	irgsp1_rep	three_prime_UTR	28112925	28113082	.	+	.	Parent=Os04t0561500-01
Chr04	irgsp1_rep	mRNA	28108848	28113603	.	+	.	ID=Os04t0561500-02;Name=Os04t0561500-02;Locus_id=Os04g0561500;Oryzabase Gene Symbol Synonym(s)=OsPOP9%2C POP9;Oryzabase Gene Name Synonym(s)=Prolyl Oligopeptidase 9%2C PROLYL OLIGOPEPTIDASE 9;Note=Similar to Prolyl endopeptidase (EC 3.4.21.26) (Post-proline cleaving enzyme) (PE).;Transcript_evidence=AK065953 (DDBJ%2C Best hit);ORF_evidence=E5GCD4 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: serine-type peptidase activity (GO:0008236),Molecular Function: serine-type exopeptidase activity (GO:0070008);InterPro=Peptidase S9%2C prolyl oligopeptidase%2C catalytic domain (IPR001375),Peptidase S9A%2C prolyl oligopeptidase (IPR002470),Peptidase S9%2C serine active site (IPR002471),Peptidase S9A/B/C%2C oligopeptidase%2C N-terminal beta-propeller (IPR004106),Peptidase S9A%2C oligopeptidase%2C N-terminal (IPR023302);NIAS_FLcDNA=J013045K08;Oryzabase=20017;Expression=AK065953;TENOR=Os04t0561500-02;KEGG=Os04t0561500-02 (EC:3.4.21.26)
Chr04	irgsp1_rep	five_prime_UTR	28108848	28108888	.	+	.	Parent=Os04t0561500-02
Chr04	irgsp1_rep	CDS	28108889	28109007	.	+	0	Parent=Os04t0561500-02
Chr04	irgsp1_rep	CDS	28109835	28110057	.	+	1	Parent=Os04t0561500-02
Chr04	irgsp1_rep	CDS	28110166	28110372	.	+	0	Parent=Os04t0561500-02
Chr04	irgsp1_rep	CDS	28110459	28110529	.	+	0	Parent=Os04t0561500-02
Chr04	irgsp1_rep	CDS	28110618	28110783	.	+	1	Parent=Os04t0561500-02
Chr04	irgsp1_rep	CDS	28110909	28111508	.	+	0	Parent=Os04t0561500-02
Chr04	irgsp1_rep	CDS	28111648	28112028	.	+	0	Parent=Os04t0561500-02
Chr04	irgsp1_rep	CDS	28112117	28112192	.	+	0	Parent=Os04t0561500-02
Chr04	irgsp1_rep	CDS	28112286	28112349	.	+	2	Parent=Os04t0561500-02
Chr04	irgsp1_rep	CDS	28112448	28112580	.	+	1	Parent=Os04t0561500-02
Chr04	irgsp1_rep	CDS	28112662	28112775	.	+	0	Parent=Os04t0561500-02
Chr04	irgsp1_rep	CDS	28112859	28112924	.	+	0	Parent=Os04t0561500-02
Chr04	irgsp1_rep	three_prime_UTR	28112925	28113603	.	+	.	Parent=Os04t0561500-02
Chr04	irgsp1_rep	mRNA	28114644	28116160	.	-	.	ID=Os04t0561550-00;Name=Os04t0561550-00;Locus_id=Os04g0561550;Note=Hypothetical conserved gene.;Transcript_evidence=BT019239 (DDBJ);ORF_evidence=NP_001183780.1 (RefSeq);TENOR=Os04t0561550-00
Chr04	irgsp1_rep	five_prime_UTR	28116090	28116160	.	-	.	Parent=Os04t0561550-00
Chr04	irgsp1_rep	CDS	28116029	28116089	.	-	0	Parent=Os04t0561550-00
Chr04	irgsp1_rep	CDS	28114644	28115527	.	-	2	Parent=Os04t0561550-00
Chr04	irgsp1_rep	mRNA	28114866	28117461	.	+	.	ID=Os04t0561600-01;Name=Os04t0561600-01;Locus_id=Os04g0561600;Note=Protein of unknown function DUF1014 family protein.;Transcript_evidence=AK068927 (DDBJ%2C Best hit);ORF_evidence=Q01JB1 (UniProt);InterPro=Protein of unknown function DUF1014 (IPR010422);NIAS_FLcDNA=J013170J12;Expression=AK068927;TENOR=Os04t0561600-01;KEGG=Os04t0561600-01
Chr04	irgsp1_rep	five_prime_UTR	28114866	28114956	.	+	.	Parent=Os04t0561600-01
Chr04	irgsp1_rep	CDS	28114957	28115529	.	+	0	Parent=Os04t0561600-01
Chr04	irgsp1_rep	CDS	28116031	28116150	.	+	0	Parent=Os04t0561600-01
Chr04	irgsp1_rep	CDS	28117110	28117121	.	+	0	Parent=Os04t0561600-01
Chr04	irgsp1_rep	three_prime_UTR	28117122	28117155	.	+	.	Parent=Os04t0561600-01
Chr04	irgsp1_rep	three_prime_UTR	28117249	28117461	.	+	.	Parent=Os04t0561600-01
Chr04	irgsp1_rep	mRNA	28117990	28122646	.	-	.	ID=Os04t0561700-01;Name=Os04t0561700-01;Locus_id=Os04g0561700;Note=Similar to H0211B05.2 protein.;Transcript_evidence=AK067397 (DDBJ%2C Best hit);ORF_evidence=Q01JB0 (UniProt);GO=Biological Process: pseudouridine synthesis (GO:0001522),Biological Process: RNA modification (GO:0009451),Molecular Function: RNA binding (GO:0003723),Molecular Function: pseudouridine synthase activity (GO:0009982);InterPro=Pseudouridine synthase%2C catalytic domain (IPR020103);NIAS_FLcDNA=J013105G06;TENOR=Os04t0561700-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	28122572	28122646	.	-	.	Parent=Os04t0561700-01
Chr04	irgsp1_rep	CDS	28122464	28122571	.	-	0	Parent=Os04t0561700-01
Chr04	irgsp1_rep	CDS	28121844	28122196	.	-	0	Parent=Os04t0561700-01
Chr04	irgsp1_rep	CDS	28121371	28121494	.	-	1	Parent=Os04t0561700-01
Chr04	irgsp1_rep	CDS	28121172	28121286	.	-	0	Parent=Os04t0561700-01
Chr04	irgsp1_rep	CDS	28120940	28121082	.	-	2	Parent=Os04t0561700-01
Chr04	irgsp1_rep	CDS	28120777	28120848	.	-	0	Parent=Os04t0561700-01
Chr04	irgsp1_rep	CDS	28120364	28120432	.	-	0	Parent=Os04t0561700-01
Chr04	irgsp1_rep	CDS	28120206	28120286	.	-	0	Parent=Os04t0561700-01
Chr04	irgsp1_rep	CDS	28119996	28120115	.	-	0	Parent=Os04t0561700-01
Chr04	irgsp1_rep	CDS	28119847	28119921	.	-	0	Parent=Os04t0561700-01
Chr04	irgsp1_rep	CDS	28119585	28119665	.	-	0	Parent=Os04t0561700-01
Chr04	irgsp1_rep	CDS	28119010	28119083	.	-	0	Parent=Os04t0561700-01
Chr04	irgsp1_rep	CDS	28118871	28118931	.	-	1	Parent=Os04t0561700-01
Chr04	irgsp1_rep	CDS	28118573	28118628	.	-	0	Parent=Os04t0561700-01
Chr04	irgsp1_rep	CDS	28118317	28118395	.	-	1	Parent=Os04t0561700-01
Chr04	irgsp1_rep	three_prime_UTR	28117990	28118316	.	-	.	Parent=Os04t0561700-01
Chr04	irgsp1_rep	mRNA	28123589	28125096	.	-	.	ID=Os04t0561800-00;Name=Os04t0561800-00;Locus_id=Os04g0561800;CGSNL Gene Symbol=GELP57;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 57;Oryzabase Gene Symbol Synonym(s)=OsGELP57;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 57;Note=Similar to H0211B05.3 protein.;Transcript_evidence=BT040108 (DDBJ);ORF_evidence=Q01JA9 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);Oryzabase=11007;TENOR=Os04t0561800-00;KEGG=Os04t0561800-00
Chr04	irgsp1_rep	five_prime_UTR	28125096	28125096	.	-	.	Parent=Os04t0561800-00
Chr04	irgsp1_rep	CDS	28124837	28125095	.	-	0	Parent=Os04t0561800-00
Chr04	irgsp1_rep	CDS	28124572	28124724	.	-	2	Parent=Os04t0561800-00
Chr04	irgsp1_rep	CDS	28124290	28124511	.	-	2	Parent=Os04t0561800-00
Chr04	irgsp1_rep	CDS	28123929	28124202	.	-	2	Parent=Os04t0561800-00
Chr04	irgsp1_rep	CDS	28123589	28123844	.	-	1	Parent=Os04t0561800-00
Chr04	irgsp1_rep	mRNA	28125905	28126110	.	-	.	ID=Os04t0561850-00;Name=Os04t0561850-00;Locus_id=Os04g0561850;Note=Non-protein coding transcript.;Transcript_evidence=EU954713 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0561850-00
Chr04	irgsp1_rep	exon	28125905	28126110	.	-	.	Parent=Os04t0561850-00
Chr04	irgsp1_rep	mRNA	28127062	28130289	.	-	.	ID=Os04t0561900-01;Name=Os04t0561900-01;Locus_id=Os04g0561900;Oryzabase Gene Symbol Synonym(s)=RMP2;Oryzabase Gene Name Synonym(s)=rice microspore-preferred 2;Note=Cupredoxin domain containing protein.;Transcript_evidence=AK071517 (DDBJ%2C Best hit),AK070790 (DDBJ%2C Best hit);ORF_evidence=Q01JA8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: copper ion binding (GO:0005507),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Multicopper oxidase%2C type 1 (IPR001117),Cupredoxin (IPR008972),Multicopper oxidase%2C type 2 (IPR011706),Multicopper oxidase%2C type 3 (IPR011707);NIAS_FLcDNA=J023100A14,J023067H20;Oryzabase=21544;Expression=AK071517;TENOR=Os04t0561900-01;KEGG=Os04t0561900-01
Chr04	irgsp1_rep	five_prime_UTR	28130200	28130289	.	-	.	Parent=Os04t0561900-01
Chr04	irgsp1_rep	CDS	28130050	28130199	.	-	0	Parent=Os04t0561900-01
Chr04	irgsp1_rep	CDS	28129827	28129937	.	-	0	Parent=Os04t0561900-01
Chr04	irgsp1_rep	CDS	28128902	28129173	.	-	0	Parent=Os04t0561900-01
Chr04	irgsp1_rep	CDS	28128720	28128820	.	-	1	Parent=Os04t0561900-01
Chr04	irgsp1_rep	CDS	28128254	28128602	.	-	2	Parent=Os04t0561900-01
Chr04	irgsp1_rep	CDS	28127780	28128154	.	-	1	Parent=Os04t0561900-01
Chr04	irgsp1_rep	CDS	28127617	28127695	.	-	1	Parent=Os04t0561900-01
Chr04	irgsp1_rep	CDS	28127282	28127509	.	-	0	Parent=Os04t0561900-01
Chr04	irgsp1_rep	three_prime_UTR	28127062	28127281	.	-	.	Parent=Os04t0561900-01
Chr04	irgsp1_rep	mRNA	28127325	28129939	.	+	.	ID=Os04t0561950-00;Name=Os04t0561950-00;Locus_id=Os04g0561950;Note=Hypothetical protein.;Transcript_evidence=tplb0021n10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0561950-00
Chr04	irgsp1_rep	five_prime_UTR	28127325	28127561	.	+	.	Parent=Os04t0561950-00
Chr04	irgsp1_rep	five_prime_UTR	28127753	28128142	.	+	.	Parent=Os04t0561950-00
Chr04	irgsp1_rep	five_prime_UTR	28128240	28128526	.	+	.	Parent=Os04t0561950-00
Chr04	irgsp1_rep	CDS	28128527	28128595	.	+	0	Parent=Os04t0561950-00
Chr04	irgsp1_rep	CDS	28128713	28128801	.	+	0	Parent=Os04t0561950-00
Chr04	irgsp1_rep	CDS	28128885	28129170	.	+	1	Parent=Os04t0561950-00
Chr04	irgsp1_rep	CDS	28129819	28129821	.	+	0	Parent=Os04t0561950-00
Chr04	irgsp1_rep	three_prime_UTR	28129822	28129939	.	+	.	Parent=Os04t0561950-00
Chr04	irgsp1_rep	mRNA	28131106	28136451	.	+	.	ID=Os04t0562000-01;Name=Os04t0562000-01;Locus_id=Os04g0562000;Note=Zinc finger%2C DHHC-type domain containing protein.;Transcript_evidence=AK072630 (DDBJ%2C Best hit);ORF_evidence=Q01JA7 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C DHHC-type%2C palmitoyltransferase (IPR001594);NIAS_FLcDNA=J023130P03;TENOR=Os04t0562000-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	28131106	28131291	.	+	.	Parent=Os04t0562000-01
Chr04	irgsp1_rep	CDS	28131292	28131358	.	+	0	Parent=Os04t0562000-01
Chr04	irgsp1_rep	CDS	28131435	28131549	.	+	2	Parent=Os04t0562000-01
Chr04	irgsp1_rep	CDS	28133190	28133264	.	+	1	Parent=Os04t0562000-01
Chr04	irgsp1_rep	CDS	28133347	28133418	.	+	1	Parent=Os04t0562000-01
Chr04	irgsp1_rep	CDS	28133536	28133670	.	+	1	Parent=Os04t0562000-01
Chr04	irgsp1_rep	CDS	28133756	28133813	.	+	1	Parent=Os04t0562000-01
Chr04	irgsp1_rep	CDS	28134460	28134569	.	+	0	Parent=Os04t0562000-01
Chr04	irgsp1_rep	CDS	28135282	28135368	.	+	1	Parent=Os04t0562000-01
Chr04	irgsp1_rep	CDS	28135493	28135576	.	+	1	Parent=Os04t0562000-01
Chr04	irgsp1_rep	CDS	28135932	28135997	.	+	1	Parent=Os04t0562000-01
Chr04	irgsp1_rep	CDS	28136097	28136271	.	+	1	Parent=Os04t0562000-01
Chr04	irgsp1_rep	three_prime_UTR	28136272	28136451	.	+	.	Parent=Os04t0562000-01
Chr04	irgsp1_rep	mRNA	28131151	28136470	.	+	.	ID=Os04t0562000-02;Name=Os04t0562000-02;Locus_id=Os04g0562000;Note=Similar to H0211B05.5 protein.;Transcript_evidence=AK104521 (DDBJ%2C Best hit),AK060894 (DDBJ%2C Best hit);ORF_evidence=Q01JA7 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C DHHC-type%2C palmitoyltransferase (IPR001594);NIAS_FLcDNA=006-303-E08,001-035-C07;TENOR=Os04t0562000-02;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	28131151	28131291	.	+	.	Parent=Os04t0562000-02
Chr04	irgsp1_rep	CDS	28131292	28131358	.	+	0	Parent=Os04t0562000-02
Chr04	irgsp1_rep	CDS	28131435	28131549	.	+	2	Parent=Os04t0562000-02
Chr04	irgsp1_rep	CDS	28133190	28133264	.	+	1	Parent=Os04t0562000-02
Chr04	irgsp1_rep	CDS	28133347	28133418	.	+	1	Parent=Os04t0562000-02
Chr04	irgsp1_rep	CDS	28133536	28133670	.	+	1	Parent=Os04t0562000-02
Chr04	irgsp1_rep	CDS	28133780	28133813	.	+	1	Parent=Os04t0562000-02
Chr04	irgsp1_rep	CDS	28134460	28134569	.	+	0	Parent=Os04t0562000-02
Chr04	irgsp1_rep	CDS	28135282	28135368	.	+	1	Parent=Os04t0562000-02
Chr04	irgsp1_rep	CDS	28135493	28135576	.	+	1	Parent=Os04t0562000-02
Chr04	irgsp1_rep	CDS	28135932	28135997	.	+	1	Parent=Os04t0562000-02
Chr04	irgsp1_rep	CDS	28136097	28136271	.	+	1	Parent=Os04t0562000-02
Chr04	irgsp1_rep	three_prime_UTR	28136272	28136470	.	+	.	Parent=Os04t0562000-02
Chr04	irgsp1_rep	mRNA	28137735	28139899	.	-	.	ID=Os04t0562100-01;Name=Os04t0562100-01;Locus_id=Os04g0562100;Oryzabase Gene Symbol Synonym(s)=OsLHT7%2C LHT7%2C OsLHT5%2C LHT5;Oryzabase Gene Name Synonym(s)=lysine-histidine-like transporter 7%2C lysine and histidine transporter 5;Note=Amino acid transporter%2C transmembrane domain containing protein.;Transcript_evidence=AK060598 (DDBJ%2C Best hit);ORF_evidence=Q01JA6 (UniProt);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=001-024-G11;Oryzabase=18507;Expression=AK060598;TENOR=Os04t0562100-01;KEGG=Os04t0562100-01
Chr04	irgsp1_rep	five_prime_UTR	28139814	28139899	.	-	.	Parent=Os04t0562100-01
Chr04	irgsp1_rep	CDS	28139467	28139813	.	-	0	Parent=Os04t0562100-01
Chr04	irgsp1_rep	CDS	28139219	28139355	.	-	1	Parent=Os04t0562100-01
Chr04	irgsp1_rep	CDS	28138698	28139125	.	-	2	Parent=Os04t0562100-01
Chr04	irgsp1_rep	CDS	28138467	28138598	.	-	0	Parent=Os04t0562100-01
Chr04	irgsp1_rep	CDS	28137875	28138369	.	-	0	Parent=Os04t0562100-01
Chr04	irgsp1_rep	three_prime_UTR	28137735	28137874	.	-	.	Parent=Os04t0562100-01
Chr04	irgsp1_rep	mRNA	28155730	28157134	.	+	.	ID=Os04t0562500-00;Name=Os04t0562500-00;Locus_id=Os04g0562500;Note=Similar to H0211B05.7 protein.;Transcript_evidence=EU973604 (DDBJ);ORF_evidence=Q01JA5 (UniProt);InterPro=Protein of unknown function DUF241%2C plant (IPR004320);TENOR=Os04t0562500-00;KEGG=Os04t0562500-00
Chr04	irgsp1_rep	CDS	28155730	28156600	.	+	0	Parent=Os04t0562500-00
Chr04	irgsp1_rep	CDS	28156653	28157125	.	+	2	Parent=Os04t0562500-00
Chr04	irgsp1_rep	three_prime_UTR	28157126	28157134	.	+	.	Parent=Os04t0562500-00
Chr04	irgsp1_rep	mRNA	28156182	28157134	.	-	.	ID=Os04t0562650-00;Name=Os04t0562650-00;Locus_id=Os04g0562650;Note=Hypothetical gene.;Transcript_evidence=EU942482 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0562650-00
Chr04	irgsp1_rep	five_prime_UTR	28157107	28157134	.	-	.	Parent=Os04t0562650-00
Chr04	irgsp1_rep	CDS	28156182	28157106	.	-	0	Parent=Os04t0562650-00
Chr04	irgsp1_rep	mRNA	28171210	28174275	.	+	.	ID=Os04t0562800-00;Name=Os04t0562800-00;Locus_id=Os04g0562800;Note=Similar to H0211B05.8 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01JA4 (UniProt);InterPro=Domain of unknown function DUF632 (IPR006867);TENOR=Os04t0562800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	28171210	28171762	.	+	0	Parent=Os04t0562800-00
Chr04	irgsp1_rep	CDS	28171847	28172010	.	+	2	Parent=Os04t0562800-00
Chr04	irgsp1_rep	CDS	28172988	28173211	.	+	0	Parent=Os04t0562800-00
Chr04	irgsp1_rep	CDS	28173570	28174275	.	+	1	Parent=Os04t0562800-00
Chr04	irgsp1_rep	mRNA	28181292	28185097	.	-	.	ID=Os04t0563000-01;Name=Os04t0563000-01;Locus_id=Os04g0563000;Note=Similar to H0211B05.12 protein.;Transcript_evidence=AK243293 (DDBJ%2C Best hit);ORF_evidence=Q01JA0 (UniProt);InterPro=GDP-fucose protein O-fucosyltransferase (IPR019378);NIAS_FLcDNA=J100053F17;TENOR=Os04t0563000-01;KEGG=Os04t0563000-01
Chr04	irgsp1_rep	five_prime_UTR	28185097	28185097	.	-	.	Parent=Os04t0563000-01
Chr04	irgsp1_rep	CDS	28184950	28185096	.	-	0	Parent=Os04t0563000-01
Chr04	irgsp1_rep	CDS	28184738	28184797	.	-	0	Parent=Os04t0563000-01
Chr04	irgsp1_rep	CDS	28184557	28184647	.	-	0	Parent=Os04t0563000-01
Chr04	irgsp1_rep	CDS	28184354	28184430	.	-	2	Parent=Os04t0563000-01
Chr04	irgsp1_rep	CDS	28183592	28183680	.	-	0	Parent=Os04t0563000-01
Chr04	irgsp1_rep	CDS	28183337	28183520	.	-	1	Parent=Os04t0563000-01
Chr04	irgsp1_rep	CDS	28183067	28183248	.	-	0	Parent=Os04t0563000-01
Chr04	irgsp1_rep	CDS	28182884	28182986	.	-	1	Parent=Os04t0563000-01
Chr04	irgsp1_rep	CDS	28182470	28182801	.	-	0	Parent=Os04t0563000-01
Chr04	irgsp1_rep	CDS	28182001	28182394	.	-	1	Parent=Os04t0563000-01
Chr04	irgsp1_rep	three_prime_UTR	28181847	28182000	.	-	.	Parent=Os04t0563000-01
Chr04	irgsp1_rep	three_prime_UTR	28181292	28181572	.	-	.	Parent=Os04t0563000-01
Chr04	irgsp1_rep	mRNA	28181435	28185392	.	+	.	ID=Os04t0563050-00;Name=Os04t0563050-00;Locus_id=Os04g0563050;Note=Hypothetical protein.;Transcript_evidence=tplb0058a02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0563050-00
Chr04	irgsp1_rep	five_prime_UTR	28181435	28181600	.	+	.	Parent=Os04t0563050-00
Chr04	irgsp1_rep	five_prime_UTR	28181886	28182378	.	+	.	Parent=Os04t0563050-00
Chr04	irgsp1_rep	five_prime_UTR	28182451	28182559	.	+	.	Parent=Os04t0563050-00
Chr04	irgsp1_rep	CDS	28182560	28182792	.	+	0	Parent=Os04t0563050-00
Chr04	irgsp1_rep	CDS	28182869	28182953	.	+	1	Parent=Os04t0563050-00
Chr04	irgsp1_rep	three_prime_UTR	28182954	28182988	.	+	.	Parent=Os04t0563050-00
Chr04	irgsp1_rep	three_prime_UTR	28183072	28183234	.	+	.	Parent=Os04t0563050-00
Chr04	irgsp1_rep	three_prime_UTR	28183321	28183522	.	+	.	Parent=Os04t0563050-00
Chr04	irgsp1_rep	three_prime_UTR	28183584	28183680	.	+	.	Parent=Os04t0563050-00
Chr04	irgsp1_rep	three_prime_UTR	28184354	28184414	.	+	.	Parent=Os04t0563050-00
Chr04	irgsp1_rep	three_prime_UTR	28184538	28184648	.	+	.	Parent=Os04t0563050-00
Chr04	irgsp1_rep	three_prime_UTR	28184739	28184791	.	+	.	Parent=Os04t0563050-00
Chr04	irgsp1_rep	three_prime_UTR	28184943	28185392	.	+	.	Parent=Os04t0563050-00
Chr04	irgsp1_rep	mRNA	28192341	28195490	.	-	.	ID=Os04t0563100-00;Name=Os04t0563100-00;Locus_id=Os04g0563100;Note=Similar to H0211B05.13 protein.;Transcript_evidence=tplb0040p14 (Wheat FLcDNA);ORF_evidence=Q01J99 (UniProt);InterPro=Protein of unknown function DUF300 (IPR005178);TENOR=Os04t0563100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	28195316	28195490	.	-	.	Parent=Os04t0563100-00
Chr04	irgsp1_rep	CDS	28195163	28195315	.	-	0	Parent=Os04t0563100-00
Chr04	irgsp1_rep	CDS	28195006	28195062	.	-	0	Parent=Os04t0563100-00
Chr04	irgsp1_rep	CDS	28194816	28194924	.	-	0	Parent=Os04t0563100-00
Chr04	irgsp1_rep	CDS	28193986	28194170	.	-	2	Parent=Os04t0563100-00
Chr04	irgsp1_rep	CDS	28193808	28193896	.	-	0	Parent=Os04t0563100-00
Chr04	irgsp1_rep	CDS	28193348	28193609	.	-	1	Parent=Os04t0563100-00
Chr04	irgsp1_rep	CDS	28192977	28193225	.	-	0	Parent=Os04t0563100-00
Chr04	irgsp1_rep	CDS	28192548	28192856	.	-	0	Parent=Os04t0563100-00
Chr04	irgsp1_rep	three_prime_UTR	28192341	28192547	.	-	.	Parent=Os04t0563100-00
Chr04	irgsp1_rep	mRNA	28197618	28200016	.	+	.	ID=Os04t0563300-01;Name=Os04t0563300-01;Locus_id=Os04g0563300;Note=Similar to H0211B05.14 protein.;Transcript_evidence=AK060281 (DDBJ%2C Best hit);ORF_evidence=Q01J98 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174);NIAS_FLcDNA=001-006-B06;Oryzabase=17584;TENOR=Os04t0563300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	28197618	28198545	.	+	.	Parent=Os04t0563300-01
Chr04	irgsp1_rep	CDS	28198546	28198584	.	+	0	Parent=Os04t0563300-01
Chr04	irgsp1_rep	CDS	28199470	28199793	.	+	0	Parent=Os04t0563300-01
Chr04	irgsp1_rep	three_prime_UTR	28199794	28200016	.	+	.	Parent=Os04t0563300-01
Chr04	irgsp1_rep	mRNA	28197647	28200106	.	+	.	ID=Os04t0563300-02;Name=Os04t0563300-02;Locus_id=Os04g0563300;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK100487 (DDBJ%2C Best hit);ORF_evidence=Q01J98 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023097O18;Oryzabase=17584;Expression=AK100487;TENOR=Os04t0563300-02;KEGG=Os04t0563300-02
Chr04	irgsp1_rep	five_prime_UTR	28197647	28198545	.	+	.	Parent=Os04t0563300-02
Chr04	irgsp1_rep	CDS	28198546	28199073	.	+	0	Parent=Os04t0563300-02
Chr04	irgsp1_rep	three_prime_UTR	28199074	28200106	.	+	.	Parent=Os04t0563300-02
Chr04	irgsp1_rep	mRNA	28201348	28202402	.	-	.	ID=Os04t0563350-01;Name=Os04t0563350-01;Locus_id=Os04g0563350;Note=Conserved hypothetical protein.;Transcript_evidence=AK241042 (DDBJ%2C Best hit);ORF_evidence=NP_001174041.1 (RefSeq);NIAS_FLcDNA=J065060E23;TENOR=Os04t0563350-01;KEGG=Os04t0563350-01
Chr04	irgsp1_rep	five_prime_UTR	28202401	28202402	.	-	.	Parent=Os04t0563350-01
Chr04	irgsp1_rep	CDS	28201366	28202400	.	-	0	Parent=Os04t0563350-01
Chr04	irgsp1_rep	three_prime_UTR	28201348	28201365	.	-	.	Parent=Os04t0563350-01
Chr04	irgsp1_rep	mRNA	28204589	28205053	.	+	.	ID=Os04t0563401-00;Name=Os04t0563401-00;Locus_id=Os04g0563401;Note=Similar to F-box domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q84MX7 (UniProt);TENOR=Os04t0563401-00
Chr04	irgsp1_rep	CDS	28204589	28205053	.	+	0	Parent=Os04t0563401-00
Chr04	irgsp1_rep	mRNA	28218760	28221536	.	-	.	ID=Os04t0563700-01;Name=Os04t0563700-01;Locus_id=Os04g0563700;CGSNL Gene Symbol=CYCB2%3B1;CGSNL Gene Name=CYCLIN-B2-1;Oryzabase Gene Symbol Synonym(s)=cycB2%3B1 (%3DcycOs1)%2C cycB2%3B1%2C cycOs1%2C CycB2%3B1%2C CycOs1%2C CYCB2-1%2C CYCOS1%2C CycB2-Os1%2C CYCB2%2C CycB2%3Bos%3B1%2C Orysa%3BCycB2%3B1%2C CycB2%3Bos%3B1%2C OsCycB2%3B1;Oryzabase Gene Name Synonym(s)=Cyclin-B2-1%2C G2/mitotic-specific cyclin-B2-1%2C B-type cyclin 2%3B1%2C cyclin Oryza sativa1;Note=Cyclin.;Transcript_evidence=AK070211 (DDBJ%2C Best hit);ORF_evidence=Q7XSJ6 (UniProt);GO=Biological Process: regulation of cyclin-dependent protein kinase activity (GO:0000079),Biological Process: regulation of cell cycle (GO:0051726),Cellular Component: nucleus (GO:0005634),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin%2C C-terminal (IPR004367),Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763),Cyclin A/B/D/E (IPR014400);NIAS_FLcDNA=J023043I23;Oryzabase=6027;Expression=AK070211;TENOR=Os04t0563700-01;KEGG=Os04t0563700-01
Chr04	irgsp1_rep	five_prime_UTR	28221452	28221536	.	-	.	Parent=Os04t0563700-01
Chr04	irgsp1_rep	CDS	28221388	28221451	.	-	0	Parent=Os04t0563700-01
Chr04	irgsp1_rep	CDS	28221205	28221295	.	-	2	Parent=Os04t0563700-01
Chr04	irgsp1_rep	CDS	28221009	28221068	.	-	1	Parent=Os04t0563700-01
Chr04	irgsp1_rep	CDS	28220761	28220920	.	-	1	Parent=Os04t0563700-01
Chr04	irgsp1_rep	CDS	28220558	28220680	.	-	0	Parent=Os04t0563700-01
Chr04	irgsp1_rep	CDS	28220243	28220332	.	-	0	Parent=Os04t0563700-01
Chr04	irgsp1_rep	CDS	28219933	28220154	.	-	0	Parent=Os04t0563700-01
Chr04	irgsp1_rep	CDS	28219603	28219701	.	-	0	Parent=Os04t0563700-01
Chr04	irgsp1_rep	CDS	28219332	28219510	.	-	0	Parent=Os04t0563700-01
Chr04	irgsp1_rep	CDS	28219041	28219215	.	-	1	Parent=Os04t0563700-01
Chr04	irgsp1_rep	three_prime_UTR	28218760	28219040	.	-	.	Parent=Os04t0563700-01
Chr04	irgsp1_rep	mRNA	28224905	28235260	.	-	.	ID=Os04t0563801-00;Name=Os04t0563801-00;Locus_id=Os04g0563801;Note=Similar to H0409D10.4 protein.;Transcript_evidence=tplb0013o05 (Wheat FLcDNA);ORF_evidence=Q01KH5 (UniProt);GO=Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: hedgehog receptor activity (GO:0008158);InterPro=Sterol-sensing domain (IPR000731),Patched (IPR003392);TENOR=Os04t0563801-00;KEGG=Os04t0563801-00
Chr04	irgsp1_rep	CDS	28235150	28235260	.	-	0	Parent=Os04t0563801-00
Chr04	irgsp1_rep	CDS	28234851	28234943	.	-	0	Parent=Os04t0563801-00
Chr04	irgsp1_rep	CDS	28234668	28234769	.	-	0	Parent=Os04t0563801-00
Chr04	irgsp1_rep	CDS	28234443	28234508	.	-	0	Parent=Os04t0563801-00
Chr04	irgsp1_rep	CDS	28233904	28233999	.	-	0	Parent=Os04t0563801-00
Chr04	irgsp1_rep	CDS	28233706	28233813	.	-	0	Parent=Os04t0563801-00
Chr04	irgsp1_rep	CDS	28232584	28232697	.	-	0	Parent=Os04t0563801-00
Chr04	irgsp1_rep	CDS	28232406	28232492	.	-	0	Parent=Os04t0563801-00
Chr04	irgsp1_rep	CDS	28231998	28232126	.	-	0	Parent=Os04t0563801-00
Chr04	irgsp1_rep	CDS	28231141	28231339	.	-	0	Parent=Os04t0563801-00
Chr04	irgsp1_rep	CDS	28230893	28231033	.	-	2	Parent=Os04t0563801-00
Chr04	irgsp1_rep	CDS	28230739	28230782	.	-	2	Parent=Os04t0563801-00
Chr04	irgsp1_rep	CDS	28230519	28230602	.	-	0	Parent=Os04t0563801-00
Chr04	irgsp1_rep	CDS	28229640	28229708	.	-	0	Parent=Os04t0563801-00
Chr04	irgsp1_rep	CDS	28229473	28229549	.	-	0	Parent=Os04t0563801-00
Chr04	irgsp1_rep	CDS	28228987	28229056	.	-	1	Parent=Os04t0563801-00
Chr04	irgsp1_rep	CDS	28228646	28228795	.	-	0	Parent=Os04t0563801-00
Chr04	irgsp1_rep	CDS	28228390	28228461	.	-	0	Parent=Os04t0563801-00
Chr04	irgsp1_rep	CDS	28228073	28228217	.	-	0	Parent=Os04t0563801-00
Chr04	irgsp1_rep	CDS	28227860	28227924	.	-	2	Parent=Os04t0563801-00
Chr04	irgsp1_rep	CDS	28227688	28227753	.	-	0	Parent=Os04t0563801-00
Chr04	irgsp1_rep	CDS	28227141	28227234	.	-	0	Parent=Os04t0563801-00
Chr04	irgsp1_rep	CDS	28227028	28227064	.	-	2	Parent=Os04t0563801-00
Chr04	irgsp1_rep	CDS	28226877	28226934	.	-	1	Parent=Os04t0563801-00
Chr04	irgsp1_rep	CDS	28226023	28226133	.	-	0	Parent=Os04t0563801-00
Chr04	irgsp1_rep	CDS	28225472	28225539	.	-	0	Parent=Os04t0563801-00
Chr04	irgsp1_rep	CDS	28225238	28225304	.	-	1	Parent=Os04t0563801-00
Chr04	irgsp1_rep	CDS	28225083	28225151	.	-	0	Parent=Os04t0563801-00
Chr04	irgsp1_rep	CDS	28224915	28224995	.	-	0	Parent=Os04t0563801-00
Chr04	irgsp1_rep	three_prime_UTR	28224905	28224914	.	-	.	Parent=Os04t0563801-00
Chr04	irgsp1_rep	mRNA	28262938	28265746	.	-	.	ID=Os04t0563900-00;Name=Os04t0563900-00;Locus_id=Os04g0563900;CGSNL Gene Symbol=RLCK157;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 157;Oryzabase Gene Symbol Synonym(s)=OsRLCK157;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 157;Note=Similar to H0409D10.5 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01KH4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);Oryzabase=18860;TENOR=Os04t0563900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	28265662	28265746	.	-	0	Parent=Os04t0563900-00
Chr04	irgsp1_rep	CDS	28265135	28265610	.	-	2	Parent=Os04t0563900-00
Chr04	irgsp1_rep	CDS	28264419	28264554	.	-	0	Parent=Os04t0563900-00
Chr04	irgsp1_rep	CDS	28263771	28263913	.	-	2	Parent=Os04t0563900-00
Chr04	irgsp1_rep	CDS	28263498	28263621	.	-	0	Parent=Os04t0563900-00
Chr04	irgsp1_rep	CDS	28262938	28263401	.	-	2	Parent=Os04t0563900-00
Chr04	irgsp1_rep	mRNA	28263055	28265494	.	+	.	ID=Os04t0563950-00;Name=Os04t0563950-00;Locus_id=Os04g0563950;Note=Hypothetical protein.;Transcript_evidence=tplb0023d22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0563950-00
Chr04	irgsp1_rep	CDS	28263055	28263417	.	+	0	Parent=Os04t0563950-00
Chr04	irgsp1_rep	three_prime_UTR	28263418	28263629	.	+	.	Parent=Os04t0563950-00
Chr04	irgsp1_rep	three_prime_UTR	28263687	28264011	.	+	.	Parent=Os04t0563950-00
Chr04	irgsp1_rep	three_prime_UTR	28264107	28265494	.	+	.	Parent=Os04t0563950-00
Chr04	irgsp1_rep	mRNA	28273505	28275830	.	-	.	ID=Os04t0564000-00;Name=Os04t0564000-00;Locus_id=Os04g0564000;Note=Similar to H0409D10.6 protein.;Transcript_evidence=tplb0058i05 (Wheat FLcDNA);ORF_evidence=Q01KH3 (UniProt);InterPro=Plant regulator RWP-RK (IPR003035);TENOR=Os04t0564000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	28275826	28275830	.	-	.	Parent=Os04t0564000-00
Chr04	irgsp1_rep	CDS	28275756	28275825	.	-	0	Parent=Os04t0564000-00
Chr04	irgsp1_rep	CDS	28275333	28275609	.	-	2	Parent=Os04t0564000-00
Chr04	irgsp1_rep	CDS	28274957	28275156	.	-	1	Parent=Os04t0564000-00
Chr04	irgsp1_rep	CDS	28273882	28274102	.	-	2	Parent=Os04t0564000-00
Chr04	irgsp1_rep	CDS	28273522	28273770	.	-	0	Parent=Os04t0564000-00
Chr04	irgsp1_rep	three_prime_UTR	28273505	28273521	.	-	.	Parent=Os04t0564000-00
Chr04	irgsp1_rep	mRNA	28284184	28285118	.	+	.	ID=Os04t0564300-01;Name=Os04t0564300-01;Locus_id=Os04g0564300;Note=Conserved hypothetical protein.;Transcript_evidence=AK111391 (DDBJ%2C Best hit);ORF_evidence=B9FC02 (UniProt);NIAS_FLcDNA=002-182-C05;TENOR=Os04t0564300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	28284184	28284184	.	+	.	Parent=Os04t0564300-01
Chr04	irgsp1_rep	CDS	28284185	28284216	.	+	0	Parent=Os04t0564300-01
Chr04	irgsp1_rep	CDS	28284480	28284675	.	+	1	Parent=Os04t0564300-01
Chr04	irgsp1_rep	CDS	28284785	28284823	.	+	0	Parent=Os04t0564300-01
Chr04	irgsp1_rep	three_prime_UTR	28284824	28285118	.	+	.	Parent=Os04t0564300-01
Chr04	irgsp1_rep	mRNA	28290105	28292273	.	+	.	ID=Os04t0564500-01;Name=Os04t0564500-01;Locus_id=Os04g0564500;Note=Protein of unknown function DUF833 family protein.;Transcript_evidence=AK241286 (DDBJ%2C Best hit);ORF_evidence=Q01KG9 (UniProt);InterPro=Protein of unknown function DUF833 (IPR008551);NIAS_FLcDNA=J065137C21;TENOR=Os04t0564500-01;KEGG=Os04t0564500-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	28290105	28290152	.	+	.	Parent=Os04t0564500-01
Chr04	irgsp1_rep	CDS	28290153	28290518	.	+	0	Parent=Os04t0564500-01
Chr04	irgsp1_rep	CDS	28290988	28291191	.	+	0	Parent=Os04t0564500-01
Chr04	irgsp1_rep	CDS	28291472	28291666	.	+	0	Parent=Os04t0564500-01
Chr04	irgsp1_rep	CDS	28291760	28291939	.	+	0	Parent=Os04t0564500-01
Chr04	irgsp1_rep	three_prime_UTR	28291940	28292273	.	+	.	Parent=Os04t0564500-01
Chr04	irgsp1_rep	mRNA	28293203	28296131	.	+	.	ID=Os04t0564600-01;Name=Os04t0564600-01;Locus_id=Os04g0564600;Oryzabase Gene Name Synonym(s)=HMG transcription factor;Note=Similar to HMG1 protein.;Transcript_evidence=AK120614 (DDBJ%2C Best hit);ORF_evidence=Q01KG8 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=High mobility group%2C HMG1/HMG2 (IPR000910),High mobility group%2C superfamily (IPR009071);NIAS_FLcDNA=J013151P06;Oryzabase=16198;Expression=AK120614;TENOR=Os04t0564600-01;KEGG=Os04t0564600-01
Chr04	irgsp1_rep	five_prime_UTR	28293203	28293314	.	+	.	Parent=Os04t0564600-01
Chr04	irgsp1_rep	CDS	28293315	28293340	.	+	0	Parent=Os04t0564600-01
Chr04	irgsp1_rep	CDS	28293505	28293585	.	+	1	Parent=Os04t0564600-01
Chr04	irgsp1_rep	CDS	28293711	28293768	.	+	1	Parent=Os04t0564600-01
Chr04	irgsp1_rep	CDS	28293868	28293912	.	+	0	Parent=Os04t0564600-01
Chr04	irgsp1_rep	CDS	28295378	28295446	.	+	0	Parent=Os04t0564600-01
Chr04	irgsp1_rep	CDS	28295546	28295656	.	+	0	Parent=Os04t0564600-01
Chr04	irgsp1_rep	CDS	28295763	28295771	.	+	0	Parent=Os04t0564600-01
Chr04	irgsp1_rep	three_prime_UTR	28295772	28296131	.	+	.	Parent=Os04t0564600-01
Chr04	irgsp1_rep	mRNA	28293225	28294342	.	+	.	ID=Os04t0564600-02;Name=Os04t0564600-02;Locus_id=Os04g0564600;Oryzabase Gene Name Synonym(s)=HMG transcription factor;Note=Similar to H0409D10.9 protein.;Transcript_evidence=AK105145 (DDBJ%2C Best hit);ORF_evidence=Q01KG8 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=High mobility group%2C HMG1/HMG2 (IPR000910),High mobility group%2C superfamily (IPR009071);NIAS_FLcDNA=001-103-B09;Oryzabase=16198;Expression=AK105145;TENOR=Os04t0564600-02;KEGG=Os04t0564600-02
Chr04	irgsp1_rep	five_prime_UTR	28293225	28293314	.	+	.	Parent=Os04t0564600-02
Chr04	irgsp1_rep	CDS	28293315	28293340	.	+	0	Parent=Os04t0564600-02
Chr04	irgsp1_rep	CDS	28293505	28293585	.	+	1	Parent=Os04t0564600-02
Chr04	irgsp1_rep	CDS	28293711	28293768	.	+	1	Parent=Os04t0564600-02
Chr04	irgsp1_rep	CDS	28293868	28293942	.	+	0	Parent=Os04t0564600-02
Chr04	irgsp1_rep	three_prime_UTR	28293943	28294342	.	+	.	Parent=Os04t0564600-02
Chr04	irgsp1_rep	mRNA	28296504	28305349	.	-	.	ID=Os04t0564700-01;Name=Os04t0564700-01;Locus_id=Os04g0564700;Note=WD40 repeat domain containing protein.;Transcript_evidence=AK111806 (DDBJ%2C Best hit);ORF_evidence=B8AT30 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),Lethal giant larvae (Lgl)-like%2C C-terminal (IPR013905),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J013099G05;TENOR=Os04t0564700-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	28305029	28305349	.	-	.	Parent=Os04t0564700-01
Chr04	irgsp1_rep	CDS	28304990	28305028	.	-	0	Parent=Os04t0564700-01
Chr04	irgsp1_rep	CDS	28303111	28303244	.	-	0	Parent=Os04t0564700-01
Chr04	irgsp1_rep	CDS	28302951	28303035	.	-	1	Parent=Os04t0564700-01
Chr04	irgsp1_rep	CDS	28302779	28302832	.	-	0	Parent=Os04t0564700-01
Chr04	irgsp1_rep	CDS	28302598	28302689	.	-	0	Parent=Os04t0564700-01
Chr04	irgsp1_rep	CDS	28302418	28302521	.	-	1	Parent=Os04t0564700-01
Chr04	irgsp1_rep	CDS	28302249	28302321	.	-	2	Parent=Os04t0564700-01
Chr04	irgsp1_rep	CDS	28301716	28302097	.	-	1	Parent=Os04t0564700-01
Chr04	irgsp1_rep	CDS	28300685	28301009	.	-	0	Parent=Os04t0564700-01
Chr04	irgsp1_rep	CDS	28300385	28300575	.	-	2	Parent=Os04t0564700-01
Chr04	irgsp1_rep	CDS	28300155	28300247	.	-	0	Parent=Os04t0564700-01
Chr04	irgsp1_rep	CDS	28300012	28300069	.	-	0	Parent=Os04t0564700-01
Chr04	irgsp1_rep	CDS	28299603	28299715	.	-	2	Parent=Os04t0564700-01
Chr04	irgsp1_rep	CDS	28298911	28299157	.	-	0	Parent=Os04t0564700-01
Chr04	irgsp1_rep	CDS	28298661	28298779	.	-	2	Parent=Os04t0564700-01
Chr04	irgsp1_rep	CDS	28298456	28298580	.	-	0	Parent=Os04t0564700-01
Chr04	irgsp1_rep	CDS	28298255	28298369	.	-	1	Parent=Os04t0564700-01
Chr04	irgsp1_rep	CDS	28298064	28298119	.	-	0	Parent=Os04t0564700-01
Chr04	irgsp1_rep	CDS	28297749	28297842	.	-	1	Parent=Os04t0564700-01
Chr04	irgsp1_rep	CDS	28297486	28297678	.	-	0	Parent=Os04t0564700-01
Chr04	irgsp1_rep	CDS	28297311	28297409	.	-	2	Parent=Os04t0564700-01
Chr04	irgsp1_rep	CDS	28297067	28297185	.	-	2	Parent=Os04t0564700-01
Chr04	irgsp1_rep	CDS	28296889	28296951	.	-	0	Parent=Os04t0564700-01
Chr04	irgsp1_rep	CDS	28296643	28296747	.	-	0	Parent=Os04t0564700-01
Chr04	irgsp1_rep	three_prime_UTR	28296504	28296642	.	-	.	Parent=Os04t0564700-01
Chr04	irgsp1_rep	mRNA	28296439	28301777	.	-	.	ID=Os04t0564700-02;Name=Os04t0564700-02;Locus_id=Os04g0564700;Note=Similar to OSIGBa0158F05.3 protein.;Transcript_evidence=AK111615 (DDBJ%2C Best hit);ORF_evidence=Q01KG7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),Lethal giant larvae (Lgl)-like%2C C-terminal (IPR013905),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J013106F11;TENOR=Os04t0564700-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	28301776	28301777	.	-	.	Parent=Os04t0564700-02
Chr04	irgsp1_rep	CDS	28301716	28301775	.	-	0	Parent=Os04t0564700-02
Chr04	irgsp1_rep	CDS	28300685	28301009	.	-	0	Parent=Os04t0564700-02
Chr04	irgsp1_rep	CDS	28300385	28300575	.	-	2	Parent=Os04t0564700-02
Chr04	irgsp1_rep	CDS	28300155	28300247	.	-	0	Parent=Os04t0564700-02
Chr04	irgsp1_rep	CDS	28300012	28300069	.	-	0	Parent=Os04t0564700-02
Chr04	irgsp1_rep	CDS	28299603	28299715	.	-	2	Parent=Os04t0564700-02
Chr04	irgsp1_rep	CDS	28298911	28299157	.	-	0	Parent=Os04t0564700-02
Chr04	irgsp1_rep	CDS	28298661	28298779	.	-	2	Parent=Os04t0564700-02
Chr04	irgsp1_rep	CDS	28298456	28298580	.	-	0	Parent=Os04t0564700-02
Chr04	irgsp1_rep	CDS	28298255	28298369	.	-	1	Parent=Os04t0564700-02
Chr04	irgsp1_rep	CDS	28298064	28298119	.	-	0	Parent=Os04t0564700-02
Chr04	irgsp1_rep	CDS	28297749	28297842	.	-	1	Parent=Os04t0564700-02
Chr04	irgsp1_rep	CDS	28297486	28297678	.	-	0	Parent=Os04t0564700-02
Chr04	irgsp1_rep	CDS	28297311	28297409	.	-	2	Parent=Os04t0564700-02
Chr04	irgsp1_rep	CDS	28297067	28297185	.	-	2	Parent=Os04t0564700-02
Chr04	irgsp1_rep	CDS	28296889	28296951	.	-	0	Parent=Os04t0564700-02
Chr04	irgsp1_rep	CDS	28296643	28296747	.	-	0	Parent=Os04t0564700-02
Chr04	irgsp1_rep	three_prime_UTR	28296439	28296642	.	-	.	Parent=Os04t0564700-02
Chr04	irgsp1_rep	mRNA	28315067	28316816	.	+	.	ID=Os04t0565200-01;Name=Os04t0565200-01;Locus_id=Os04g0565200;Note=Similar to Cis-zeatin O-glucosyltransferase 1 (EC 2.4.1.215) (cisZOG1).;Transcript_evidence=AK111866 (DDBJ%2C Best hit);ORF_evidence=Q01KG5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J033040N14;Expression=AK111866;TENOR=Os04t0565200-01;KEGG=Os04t0565200-01 (EC:2.4.1.215)
Chr04	irgsp1_rep	five_prime_UTR	28315067	28315132	.	+	.	Parent=Os04t0565200-01
Chr04	irgsp1_rep	CDS	28315133	28316527	.	+	0	Parent=Os04t0565200-01
Chr04	irgsp1_rep	three_prime_UTR	28316528	28316816	.	+	.	Parent=Os04t0565200-01
Chr04	irgsp1_rep	mRNA	28336636	28338321	.	+	.	ID=Os04t0565400-01;Name=Os04t0565400-01;Locus_id=Os04g0565400;RAP-DB Gene Symbol Synonym(s)=CZOGT3%2C OscZOGT3%2C cZOGT3;RAP-DB Gene Name Synonym(s)=CIS-ZEATIN O-GLUCOSYLTRANSFERASE 3%2C cis-zeatin O-glucosyltransferase 3%2C cZ-O-glucosyltransferase 3;CGSNL Gene Symbol=CZOGT3;CGSNL Gene Name=CIS-ZEATIN O-GLUCOSYLTRANSFERASE 3;Oryzabase Gene Symbol Synonym(s)=OscZOGT3%2C cZOGT3;Oryzabase Gene Name Synonym(s)=cis-zeatin O-glucosyltransferase 3%2C cZ-O-glucosyltransferase 3;Note=cis-Zeatin-O-glucosyltransferase%2C Catalyze O-glucosylation of cZ and cZ-riboside;Transcript_evidence=AK242168,NM_001060109;ORF_evidence=Q7XQJ5;GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J075157N10;Manual Curation=August 22%2C 2014;Literature_PMID=22811434;Oryzabase=20408;TENOR=Os04t0565400-01;KEGG=Os04t0565400-01 (EC:2.4.1.215)
Chr04	irgsp1_rep	five_prime_UTR	28336636	28336675	.	+	.	Parent=Os04t0565400-01
Chr04	irgsp1_rep	CDS	28336676	28338070	.	+	0	Parent=Os04t0565400-01
Chr04	irgsp1_rep	three_prime_UTR	28338071	28338321	.	+	.	Parent=Os04t0565400-01
Chr04	irgsp1_rep	mRNA	28339390	28339941	.	-	.	ID=Os04t0565450-00;Name=Os04t0565450-00;Locus_id=Os04g0565450;Note=Conserved hypothetical protein.;Transcript_evidence=EU958332 (DDBJ);ORF_evidence=B8ADK9 (UniProt);TENOR=Os04t0565450-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	28339393	28339941	.	-	0	Parent=Os04t0565450-00
Chr04	irgsp1_rep	three_prime_UTR	28339390	28339392	.	-	.	Parent=Os04t0565450-00
Chr04	irgsp1_rep	mRNA	28341772	28343271	.	-	.	ID=Os04t0565500-01;Name=Os04t0565500-01;Locus_id=Os04g0565500;Oryzabase Gene Symbol Synonym(s)=OsANT4%2C ANT4%2C FCO8;Oryzabase Gene Name Synonym(s)=aromatic and neutral amino acid transporter 4%2C Functioning in Cesium Over-transport 8;Note=Similar to OSIGBa0158F05.8 protein.;Transcript_evidence=AK105902 (DDBJ%2C Best hit),AK071118 (DDBJ%2C Best hit);ORF_evidence=Q01KG2 (UniProt);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=001-204-F10,J023082L01;Oryzabase=18518;Expression=AK105902;TENOR=Os04t0565500-01;KEGG=Os04t0565500-01
Chr04	irgsp1_rep	five_prime_UTR	28343157	28343271	.	-	.	Parent=Os04t0565500-01
Chr04	irgsp1_rep	CDS	28341879	28343156	.	-	0	Parent=Os04t0565500-01
Chr04	irgsp1_rep	three_prime_UTR	28341772	28341878	.	-	.	Parent=Os04t0565500-01
Chr04	irgsp1_rep	mRNA	28341772	28343266	.	-	.	ID=Os04t0565500-03;Name=Os04t0565500-03;Locus_id=Os04g0565500;Oryzabase Gene Symbol Synonym(s)=OsANT4%2C ANT4%2C FCO8;Oryzabase Gene Name Synonym(s)=aromatic and neutral amino acid transporter 4%2C Functioning in Cesium Over-transport 8;Note=Amino acid transporter%2C transmembrane domain containing protein.;Transcript_evidence=AK058888 (DDBJ%2C Best hit);ORF_evidence=Q01KG2 (UniProt);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=001-007-C11;Oryzabase=18518;Expression=AK058888;TENOR=Os04t0565500-03;KEGG=Os04t0565500-03
Chr04	irgsp1_rep	five_prime_UTR	28343157	28343266	.	-	.	Parent=Os04t0565500-03
Chr04	irgsp1_rep	CDS	28342583	28343156	.	-	0	Parent=Os04t0565500-03
Chr04	irgsp1_rep	CDS	28341879	28342492	.	-	2	Parent=Os04t0565500-03
Chr04	irgsp1_rep	three_prime_UTR	28341772	28341878	.	-	.	Parent=Os04t0565500-03
Chr04	irgsp1_rep	mRNA	28367022	28367958	.	-	.	ID=Os04t0565750-00;Name=Os04t0565750-00;Locus_id=Os04g0565750;Note=Hypothetical gene.;Transcript_evidence=CT837494 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os04t0565750-00;KEGG=Os04t0565750-00;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	28367870	28367958	.	-	0	Parent=Os04t0565750-00
Chr04	irgsp1_rep	CDS	28367462	28367840	.	-	1	Parent=Os04t0565750-00
Chr04	irgsp1_rep	three_prime_UTR	28367420	28367461	.	-	.	Parent=Os04t0565750-00
Chr04	irgsp1_rep	three_prime_UTR	28367022	28367245	.	-	.	Parent=Os04t0565750-00
Chr04	irgsp1_rep	mRNA	28369370	28371848	.	-	.	ID=Os04t0565900-01;Name=Os04t0565900-01;Locus_id=Os04g0565900;Oryzabase Gene Symbol Synonym(s)=OsbHLH075;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 075;Note=Basic helix-loop-helix dimerisation region bHLH domain containing protein.;Transcript_evidence=AK109094 (DDBJ%2C Best hit);ORF_evidence=Q01KG1 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=002-155-A07;Oryzabase=15362;Expression=AK109094;TENOR=Os04t0565900-01;KEGG=Os04t0565900-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	28371829	28371848	.	-	.	Parent=Os04t0565900-01
Chr04	irgsp1_rep	CDS	28371569	28371828	.	-	0	Parent=Os04t0565900-01
Chr04	irgsp1_rep	CDS	28370934	28371465	.	-	1	Parent=Os04t0565900-01
Chr04	irgsp1_rep	CDS	28370735	28370854	.	-	0	Parent=Os04t0565900-01
Chr04	irgsp1_rep	CDS	28370574	28370645	.	-	0	Parent=Os04t0565900-01
Chr04	irgsp1_rep	CDS	28370390	28370455	.	-	0	Parent=Os04t0565900-01
Chr04	irgsp1_rep	CDS	28369920	28369958	.	-	0	Parent=Os04t0565900-01
Chr04	irgsp1_rep	CDS	28369651	28369818	.	-	0	Parent=Os04t0565900-01
Chr04	irgsp1_rep	three_prime_UTR	28369370	28369650	.	-	.	Parent=Os04t0565900-01
Chr04	irgsp1_rep	mRNA	28376045	28376709	.	-	.	ID=Os04t0566000-01;Name=Os04t0566000-01;Locus_id=Os04g0566000;Note=Similar to OSIGBa0158F05.10 protein.;Transcript_evidence=AK107723 (DDBJ%2C Best hit);ORF_evidence=Q01KG0 (UniProt);NIAS_FLcDNA=002-132-E11;TENOR=Os04t0566000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	28376533	28376709	.	-	.	Parent=Os04t0566000-01
Chr04	irgsp1_rep	CDS	28376389	28376532	.	-	0	Parent=Os04t0566000-01
Chr04	irgsp1_rep	three_prime_UTR	28376045	28376388	.	-	.	Parent=Os04t0566000-01
Chr04	irgsp1_rep	mRNA	28379508	28385496	.	+	.	ID=Os04t0566100-00;Name=Os04t0566100-00;Locus_id=Os04g0566100;Note=Similar to OSIGBa0158F05.11 protein.;Transcript_evidence=tplb0009k14 (Wheat FLcDNA);ORF_evidence=Q01KF9 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524);InterPro=SNF2-related (IPR000330),Helicase%2C C-terminal (IPR001650),DEAD-like helicase (IPR014001);TENOR=Os04t0566100-00;KEGG=Os04t0566100-00
Chr04	irgsp1_rep	five_prime_UTR	28379508	28379667	.	+	.	Parent=Os04t0566100-00
Chr04	irgsp1_rep	CDS	28379668	28380552	.	+	0	Parent=Os04t0566100-00
Chr04	irgsp1_rep	CDS	28380626	28380743	.	+	0	Parent=Os04t0566100-00
Chr04	irgsp1_rep	CDS	28381441	28381481	.	+	2	Parent=Os04t0566100-00
Chr04	irgsp1_rep	CDS	28381787	28382037	.	+	0	Parent=Os04t0566100-00
Chr04	irgsp1_rep	CDS	28382138	28382318	.	+	1	Parent=Os04t0566100-00
Chr04	irgsp1_rep	CDS	28382865	28383050	.	+	0	Parent=Os04t0566100-00
Chr04	irgsp1_rep	CDS	28383123	28383296	.	+	0	Parent=Os04t0566100-00
Chr04	irgsp1_rep	CDS	28383719	28383877	.	+	0	Parent=Os04t0566100-00
Chr04	irgsp1_rep	CDS	28384151	28384228	.	+	0	Parent=Os04t0566100-00
Chr04	irgsp1_rep	CDS	28384339	28384475	.	+	0	Parent=Os04t0566100-00
Chr04	irgsp1_rep	CDS	28384553	28384771	.	+	1	Parent=Os04t0566100-00
Chr04	irgsp1_rep	CDS	28384943	28385105	.	+	1	Parent=Os04t0566100-00
Chr04	irgsp1_rep	three_prime_UTR	28385106	28385496	.	+	.	Parent=Os04t0566100-00
Chr04	irgsp1_rep	mRNA	28393758	28394298	.	+	.	ID=Os04t0566300-01;Name=Os04t0566300-01;Locus_id=Os04g0566300;Note=Hypothetical protein.;Transcript_evidence=AK062357 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-101-H01;Expression=AK062357;TENOR=Os04t0566300-01;KEGG=Os04t0566300-01
Chr04	irgsp1_rep	five_prime_UTR	28393758	28393871	.	+	.	Parent=Os04t0566300-01
Chr04	irgsp1_rep	CDS	28393872	28394294	.	+	0	Parent=Os04t0566300-01
Chr04	irgsp1_rep	three_prime_UTR	28394295	28394298	.	+	.	Parent=Os04t0566300-01
Chr04	irgsp1_rep	mRNA	28408769	28410801	.	+	.	ID=Os04t0566400-01;Name=Os04t0566400-01;Locus_id=Os04g0566400;CGSNL Gene Symbol=IDD10;CGSNL Gene Name=INDETERMINATE DOMAIN 10;Oryzabase Gene Symbol Synonym(s)=OsIDD10;Oryzabase Gene Name Synonym(s)=indeterminate domain 10;Note=Similar to INDETERMINATE-related protein 9.;Transcript_evidence=AK068023 (DDBJ%2C Best hit);ORF_evidence=B9FC09 (UniProt);NIAS_FLcDNA=J013132I07;Oryzabase=13148;Expression=AK068023;TENOR=Os04t0566400-01;KEGG=Os04t0566400-01
Chr04	irgsp1_rep	five_prime_UTR	28408769	28408933	.	+	.	Parent=Os04t0566400-01
Chr04	irgsp1_rep	five_prime_UTR	28409515	28409636	.	+	.	Parent=Os04t0566400-01
Chr04	irgsp1_rep	CDS	28409637	28410017	.	+	0	Parent=Os04t0566400-01
Chr04	irgsp1_rep	three_prime_UTR	28410018	28410801	.	+	.	Parent=Os04t0566400-01
Chr04	irgsp1_rep	mRNA	28408910	28416001	.	+	.	ID=Os04t0566400-02;Name=Os04t0566400-02;Locus_id=Os04g0566400;RAP-DB Gene Symbol Synonym(s)=IDD10%2C OsIDD10;RAP-DB Gene Name Synonym(s)=indeterminate domain 10;CGSNL Gene Symbol=IDD10;CGSNL Gene Name=INDETERMINATE DOMAIN 10;Oryzabase Gene Symbol Synonym(s)=OsIDD10;Oryzabase Gene Name Synonym(s)=indeterminate domain 10;Note=Transcription factor%2C Regulation of ammonium-mediated gene expression in rice roots%2C Regulation of ammonium-dependent root growth;Transcript_evidence=AK120723;ORF_evidence=A0A0P0WDK4;GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Zinc finger C2H2 superfamily (IPR036236),Zinc finger C2H2-type (IPR013087),Zinc finger%2C double-stranded RNA binding (IPR022755);NIAS_FLcDNA=J023002I18;Manual Curation=June 15%2C 2020;Literature_PMID=30715138,23278238;Oryzabase=13148;TENOR=Os04t0566400-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=nucleus (GO:0005634)
Chr04	irgsp1_rep	five_prime_UTR	28408910	28409636	.	+	.	Parent=Os04t0566400-02
Chr04	irgsp1_rep	CDS	28409637	28409862	.	+	0	Parent=Os04t0566400-02
Chr04	irgsp1_rep	CDS	28411201	28411606	.	+	2	Parent=Os04t0566400-02
Chr04	irgsp1_rep	CDS	28414117	28415326	.	+	1	Parent=Os04t0566400-02
Chr04	irgsp1_rep	three_prime_UTR	28415327	28416001	.	+	.	Parent=Os04t0566400-02
Chr04	irgsp1_rep	mRNA	28409663	28411502	.	-	.	ID=Os04t0566450-00;Name=Os04t0566450-00;Locus_id=Os04g0566450;Note=Hypothetical gene.;Transcript_evidence=BT086922 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0566450-00;KEGG=Os04t0566450-00
Chr04	irgsp1_rep	five_prime_UTR	28411457	28411502	.	-	.	Parent=Os04t0566450-00
Chr04	irgsp1_rep	CDS	28411204	28411456	.	-	0	Parent=Os04t0566450-00
Chr04	irgsp1_rep	CDS	28409663	28409862	.	-	2	Parent=Os04t0566450-00
Chr04	irgsp1_rep	mRNA	28426536	28441619	.	-	.	ID=Os04t0566500-01;Name=Os04t0566500-01;Locus_id=Os04g0566500;CGSNL Gene Symbol=AGO1B;CGSNL Gene Name=ARGONAUTE 1B;Oryzabase Gene Symbol Synonym(s)=OsAGO1b%2C AGO1b%2C AGO1-2;Oryzabase Gene Name Synonym(s)=Protein argonaute 1B;Note=Similar to Isoform 2 of Protein argonaute 1B.;Transcript_evidence=AK111996 (DDBJ%2C Best hit);ORF_evidence=Q7XSA2-2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Argonaute/Dicer protein%2C PAZ (IPR003100),Domain of unknown function DUF1785 (IPR014811),Argonaut%2C glycine-rich domain (IPR024357);NIAS_FLcDNA=001-034-A12;Oryzabase=8269;TENOR=Os04t0566500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	28441481	28441619	.	-	.	Parent=Os04t0566500-01
Chr04	irgsp1_rep	CDS	28441438	28441480	.	-	0	Parent=Os04t0566500-01
Chr04	irgsp1_rep	CDS	28432598	28433385	.	-	2	Parent=Os04t0566500-01
Chr04	irgsp1_rep	CDS	28432301	28432521	.	-	0	Parent=Os04t0566500-01
Chr04	irgsp1_rep	CDS	28432078	28432227	.	-	1	Parent=Os04t0566500-01
Chr04	irgsp1_rep	CDS	28431871	28432004	.	-	1	Parent=Os04t0566500-01
Chr04	irgsp1_rep	CDS	28431634	28431743	.	-	2	Parent=Os04t0566500-01
Chr04	irgsp1_rep	CDS	28431432	28431538	.	-	0	Parent=Os04t0566500-01
Chr04	irgsp1_rep	CDS	28431188	28431326	.	-	1	Parent=Os04t0566500-01
Chr04	irgsp1_rep	CDS	28430942	28431058	.	-	0	Parent=Os04t0566500-01
Chr04	irgsp1_rep	CDS	28429974	28430081	.	-	0	Parent=Os04t0566500-01
Chr04	irgsp1_rep	CDS	28429798	28429869	.	-	0	Parent=Os04t0566500-01
Chr04	irgsp1_rep	CDS	28429051	28429173	.	-	0	Parent=Os04t0566500-01
Chr04	irgsp1_rep	CDS	28428831	28428956	.	-	0	Parent=Os04t0566500-01
Chr04	irgsp1_rep	CDS	28428593	28428604	.	-	0	Parent=Os04t0566500-01
Chr04	irgsp1_rep	three_prime_UTR	28428592	28428592	.	-	.	Parent=Os04t0566500-01
Chr04	irgsp1_rep	three_prime_UTR	28428373	28428510	.	-	.	Parent=Os04t0566500-01
Chr04	irgsp1_rep	three_prime_UTR	28428143	28428285	.	-	.	Parent=Os04t0566500-01
Chr04	irgsp1_rep	three_prime_UTR	28428001	28428063	.	-	.	Parent=Os04t0566500-01
Chr04	irgsp1_rep	three_prime_UTR	28427826	28427889	.	-	.	Parent=Os04t0566500-01
Chr04	irgsp1_rep	three_prime_UTR	28427613	28427748	.	-	.	Parent=Os04t0566500-01
Chr04	irgsp1_rep	three_prime_UTR	28427443	28427516	.	-	.	Parent=Os04t0566500-01
Chr04	irgsp1_rep	three_prime_UTR	28427261	28427355	.	-	.	Parent=Os04t0566500-01
Chr04	irgsp1_rep	three_prime_UTR	28427152	28427183	.	-	.	Parent=Os04t0566500-01
Chr04	irgsp1_rep	three_prime_UTR	28426536	28427042	.	-	.	Parent=Os04t0566500-01
Chr04	irgsp1_rep	mRNA	28427825	28435980	.	-	.	ID=Os04t0566500-02;Name=Os04t0566500-02;Locus_id=Os04g0566500;CGSNL Gene Symbol=AGO1B;CGSNL Gene Name=ARGONAUTE 1B;Oryzabase Gene Symbol Synonym(s)=OsAGO1b%2C AGO1b%2C AGO1-2;Oryzabase Gene Name Synonym(s)=Protein argonaute 1B;Note=Similar to Isoform 2 of Protein argonaute 1B.;Transcript_evidence=AK102911 (DDBJ%2C Best hit);ORF_evidence=Q7XSA2-2 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515);InterPro=Argonaute/Dicer protein%2C PAZ (IPR003100),Stem cell self-renewal protein Piwi (IPR003165),Ribonuclease H-like (IPR012337),Domain of unknown function DUF1785 (IPR014811),Argonaut%2C glycine-rich domain (IPR024357);NIAS_FLcDNA=J033113J23;Oryzabase=8269;TENOR=Os04t0566500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	28435765	28435980	.	-	.	Parent=Os04t0566500-02
Chr04	irgsp1_rep	five_prime_UTR	28433378	28433385	.	-	.	Parent=Os04t0566500-02
Chr04	irgsp1_rep	CDS	28432598	28433377	.	-	0	Parent=Os04t0566500-02
Chr04	irgsp1_rep	CDS	28432301	28432521	.	-	0	Parent=Os04t0566500-02
Chr04	irgsp1_rep	CDS	28432078	28432227	.	-	1	Parent=Os04t0566500-02
Chr04	irgsp1_rep	CDS	28431871	28432004	.	-	1	Parent=Os04t0566500-02
Chr04	irgsp1_rep	CDS	28431634	28431743	.	-	2	Parent=Os04t0566500-02
Chr04	irgsp1_rep	CDS	28431432	28431538	.	-	0	Parent=Os04t0566500-02
Chr04	irgsp1_rep	CDS	28431188	28431326	.	-	1	Parent=Os04t0566500-02
Chr04	irgsp1_rep	CDS	28430942	28431058	.	-	0	Parent=Os04t0566500-02
Chr04	irgsp1_rep	CDS	28429974	28430081	.	-	0	Parent=Os04t0566500-02
Chr04	irgsp1_rep	CDS	28429798	28429869	.	-	0	Parent=Os04t0566500-02
Chr04	irgsp1_rep	CDS	28429051	28429173	.	-	0	Parent=Os04t0566500-02
Chr04	irgsp1_rep	CDS	28428791	28428956	.	-	0	Parent=Os04t0566500-02
Chr04	irgsp1_rep	CDS	28428592	28428713	.	-	2	Parent=Os04t0566500-02
Chr04	irgsp1_rep	CDS	28428373	28428510	.	-	0	Parent=Os04t0566500-02
Chr04	irgsp1_rep	CDS	28428143	28428285	.	-	0	Parent=Os04t0566500-02
Chr04	irgsp1_rep	CDS	28428001	28428063	.	-	1	Parent=Os04t0566500-02
Chr04	irgsp1_rep	CDS	28427825	28427889	.	-	1	Parent=Os04t0566500-02
Chr04	irgsp1_rep	mRNA	28426614	28435976	.	-	.	ID=Os04t0566500-03;Name=Os04t0566500-03;Locus_id=Os04g0566500;RAP-DB Gene Symbol Synonym(s)=OsAGO1b;RAP-DB Gene Name Synonym(s)=ARGONAUTE 1b;CGSNL Gene Symbol=AGO1B;CGSNL Gene Name=ARGONAUTE 1B;Oryzabase Gene Symbol Synonym(s)=OsAGO1b%2C AGO1b%2C AGO1-2;Oryzabase Gene Name Synonym(s)=Protein argonaute 1B;Note=Argonaute protein%2C Regulation of growth and organ development%2C Regulation of leaf abaxial sclerenchymatous cell differentiation;Transcript_evidence=AK111504;ORF_evidence=Q7XSA2-2;GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515);InterPro=PAZ domain superfamily (IPR036085),Ribonuclease H-like superfamily (IPR012337),Ribonuclease H superfamily (IPR036397),Argonaut%2C glycine-rich domain (IPR024357),Protein argonaute%2C N-terminal (IPR032474),Argonaute%2C linker 1 domain (IPR014811),PAZ domain (IPR003100),Argonaute linker 2 domain (IPR032472),Protein argonaute%2C Mid domain (IPR032473),Piwi domain (IPR003165);NIAS_FLcDNA=J013001B21;Manual Curation=September 3%2C 2019;Literature_PMID=31396773;Oryzabase=8269;Expression=AK111504;TENOR=Os04t0566500-03;Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737)
Chr04	irgsp1_rep	five_prime_UTR	28435765	28435976	.	-	.	Parent=Os04t0566500-03
Chr04	irgsp1_rep	five_prime_UTR	28433378	28433385	.	-	.	Parent=Os04t0566500-03
Chr04	irgsp1_rep	CDS	28432598	28433377	.	-	0	Parent=Os04t0566500-03
Chr04	irgsp1_rep	CDS	28432301	28432521	.	-	0	Parent=Os04t0566500-03
Chr04	irgsp1_rep	CDS	28432078	28432227	.	-	1	Parent=Os04t0566500-03
Chr04	irgsp1_rep	CDS	28431871	28432004	.	-	1	Parent=Os04t0566500-03
Chr04	irgsp1_rep	CDS	28431634	28431743	.	-	2	Parent=Os04t0566500-03
Chr04	irgsp1_rep	CDS	28431432	28431538	.	-	0	Parent=Os04t0566500-03
Chr04	irgsp1_rep	CDS	28431188	28431326	.	-	1	Parent=Os04t0566500-03
Chr04	irgsp1_rep	CDS	28430942	28431058	.	-	0	Parent=Os04t0566500-03
Chr04	irgsp1_rep	CDS	28429974	28430081	.	-	0	Parent=Os04t0566500-03
Chr04	irgsp1_rep	CDS	28429798	28429869	.	-	0	Parent=Os04t0566500-03
Chr04	irgsp1_rep	CDS	28429051	28429173	.	-	0	Parent=Os04t0566500-03
Chr04	irgsp1_rep	CDS	28428791	28428956	.	-	0	Parent=Os04t0566500-03
Chr04	irgsp1_rep	CDS	28428592	28428713	.	-	2	Parent=Os04t0566500-03
Chr04	irgsp1_rep	CDS	28428373	28428510	.	-	0	Parent=Os04t0566500-03
Chr04	irgsp1_rep	CDS	28428143	28428285	.	-	0	Parent=Os04t0566500-03
Chr04	irgsp1_rep	CDS	28428001	28428063	.	-	1	Parent=Os04t0566500-03
Chr04	irgsp1_rep	CDS	28427826	28427889	.	-	1	Parent=Os04t0566500-03
Chr04	irgsp1_rep	CDS	28427613	28427748	.	-	0	Parent=Os04t0566500-03
Chr04	irgsp1_rep	CDS	28427443	28427516	.	-	2	Parent=Os04t0566500-03
Chr04	irgsp1_rep	CDS	28427261	28427355	.	-	0	Parent=Os04t0566500-03
Chr04	irgsp1_rep	CDS	28427152	28427183	.	-	1	Parent=Os04t0566500-03
Chr04	irgsp1_rep	CDS	28426831	28427042	.	-	2	Parent=Os04t0566500-03
Chr04	irgsp1_rep	three_prime_UTR	28426614	28426830	.	-	.	Parent=Os04t0566500-03
Chr04	irgsp1_rep	mRNA	28426529	28435892	.	-	.	ID=Os04t0566500-04;Name=Os04t0566500-04;Locus_id=Os04g0566500;RAP-DB Gene Symbol Synonym(s)=OsAGO1b;RAP-DB Gene Name Synonym(s)=ARGONAUTE 1b;CGSNL Gene Symbol=AGO1B;CGSNL Gene Name=ARGONAUTE 1B;Oryzabase Gene Symbol Synonym(s)=OsAGO1b%2C AGO1b%2C AGO1-2;Oryzabase Gene Name Synonym(s)=Protein argonaute 1B;Note=Argonaute protein%2C Regulation of growth and organ development%2C Regulation of leaf abaxial sclerenchymatous cell differentiation;Transcript_evidence=AK111587;ORF_evidence=Q7XSA2-2;GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515);InterPro=PAZ domain superfamily (IPR036085),Ribonuclease H-like superfamily (IPR012337),Ribonuclease H superfamily (IPR036397),Argonaut%2C glycine-rich domain (IPR024357),Protein argonaute%2C N-terminal (IPR032474),Argonaute%2C linker 1 domain (IPR014811),PAZ domain (IPR003100),Argonaute linker 2 domain (IPR032472),Protein argonaute%2C Mid domain (IPR032473),Piwi domain (IPR003165);NIAS_FLcDNA=J013091C01;Manual Curation=September 3%2C 2019;Literature_PMID=31396773;Oryzabase=8269;Expression=AK111587;TENOR=Os04t0566500-04;Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737)
Chr04	irgsp1_rep	five_prime_UTR	28435765	28435892	.	-	.	Parent=Os04t0566500-04
Chr04	irgsp1_rep	five_prime_UTR	28433378	28433385	.	-	.	Parent=Os04t0566500-04
Chr04	irgsp1_rep	CDS	28432598	28433377	.	-	0	Parent=Os04t0566500-04
Chr04	irgsp1_rep	CDS	28432301	28432521	.	-	0	Parent=Os04t0566500-04
Chr04	irgsp1_rep	CDS	28432078	28432227	.	-	1	Parent=Os04t0566500-04
Chr04	irgsp1_rep	CDS	28431871	28432004	.	-	1	Parent=Os04t0566500-04
Chr04	irgsp1_rep	CDS	28431634	28431743	.	-	2	Parent=Os04t0566500-04
Chr04	irgsp1_rep	CDS	28431432	28431538	.	-	0	Parent=Os04t0566500-04
Chr04	irgsp1_rep	CDS	28431188	28431326	.	-	1	Parent=Os04t0566500-04
Chr04	irgsp1_rep	CDS	28430942	28431058	.	-	0	Parent=Os04t0566500-04
Chr04	irgsp1_rep	CDS	28429974	28430081	.	-	0	Parent=Os04t0566500-04
Chr04	irgsp1_rep	CDS	28429798	28429869	.	-	0	Parent=Os04t0566500-04
Chr04	irgsp1_rep	CDS	28429051	28429173	.	-	0	Parent=Os04t0566500-04
Chr04	irgsp1_rep	CDS	28428791	28428956	.	-	0	Parent=Os04t0566500-04
Chr04	irgsp1_rep	CDS	28428592	28428713	.	-	2	Parent=Os04t0566500-04
Chr04	irgsp1_rep	CDS	28428373	28428510	.	-	0	Parent=Os04t0566500-04
Chr04	irgsp1_rep	CDS	28428143	28428285	.	-	0	Parent=Os04t0566500-04
Chr04	irgsp1_rep	CDS	28428001	28428063	.	-	1	Parent=Os04t0566500-04
Chr04	irgsp1_rep	CDS	28427826	28427889	.	-	1	Parent=Os04t0566500-04
Chr04	irgsp1_rep	CDS	28427613	28427748	.	-	0	Parent=Os04t0566500-04
Chr04	irgsp1_rep	CDS	28427443	28427516	.	-	2	Parent=Os04t0566500-04
Chr04	irgsp1_rep	CDS	28427261	28427355	.	-	0	Parent=Os04t0566500-04
Chr04	irgsp1_rep	CDS	28427152	28427183	.	-	1	Parent=Os04t0566500-04
Chr04	irgsp1_rep	CDS	28426831	28427042	.	-	2	Parent=Os04t0566500-04
Chr04	irgsp1_rep	three_prime_UTR	28426529	28426830	.	-	.	Parent=Os04t0566500-04
Chr04	irgsp1_rep	mRNA	28426525	28441628	.	-	.	ID=Os04t0566500-05;Name=Os04t0566500-05;Locus_id=Os04g0566500;CGSNL Gene Symbol=AGO1B;CGSNL Gene Name=ARGONAUTE 1B;Oryzabase Gene Symbol Synonym(s)=OsAGO1b%2C AGO1b%2C AGO1-2;Oryzabase Gene Name Synonym(s)=Protein argonaute 1B;Note=Argonaute protein;Transcript_evidence=XM_015780805;ORF_evidence=Q7XSA2;GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515);InterPro=PAZ domain superfamily (IPR036085),Ribonuclease H-like superfamily (IPR012337),Ribonuclease H superfamily (IPR036397),Argonaut%2C glycine-rich domain (IPR024357),Protein argonaute%2C N-terminal (IPR032474),Argonaute%2C linker 1 domain (IPR014811),PAZ domain (IPR003100),Argonaute linker 2 domain (IPR032472),Protein argonaute%2C Mid domain (IPR032473),Piwi domain (IPR003165);Manual Curation=September 3%2C 2019;Literature_PMID=31396773;Oryzabase=8269
Chr04	irgsp1_rep	five_prime_UTR	28441481	28441628	.	-	.	Parent=Os04t0566500-05
Chr04	irgsp1_rep	CDS	28441438	28441480	.	-	0	Parent=Os04t0566500-05
Chr04	irgsp1_rep	CDS	28432598	28433385	.	-	2	Parent=Os04t0566500-05
Chr04	irgsp1_rep	CDS	28432301	28432521	.	-	0	Parent=Os04t0566500-05
Chr04	irgsp1_rep	CDS	28432078	28432227	.	-	1	Parent=Os04t0566500-05
Chr04	irgsp1_rep	CDS	28431871	28432004	.	-	1	Parent=Os04t0566500-05
Chr04	irgsp1_rep	CDS	28431634	28431743	.	-	2	Parent=Os04t0566500-05
Chr04	irgsp1_rep	CDS	28431432	28431538	.	-	0	Parent=Os04t0566500-05
Chr04	irgsp1_rep	CDS	28431188	28431326	.	-	1	Parent=Os04t0566500-05
Chr04	irgsp1_rep	CDS	28430942	28431058	.	-	0	Parent=Os04t0566500-05
Chr04	irgsp1_rep	CDS	28429974	28430081	.	-	0	Parent=Os04t0566500-05
Chr04	irgsp1_rep	CDS	28429798	28429869	.	-	0	Parent=Os04t0566500-05
Chr04	irgsp1_rep	CDS	28429051	28429173	.	-	0	Parent=Os04t0566500-05
Chr04	irgsp1_rep	CDS	28428791	28428956	.	-	0	Parent=Os04t0566500-05
Chr04	irgsp1_rep	CDS	28428592	28428713	.	-	2	Parent=Os04t0566500-05
Chr04	irgsp1_rep	CDS	28428373	28428510	.	-	0	Parent=Os04t0566500-05
Chr04	irgsp1_rep	CDS	28428143	28428285	.	-	0	Parent=Os04t0566500-05
Chr04	irgsp1_rep	CDS	28428001	28428063	.	-	1	Parent=Os04t0566500-05
Chr04	irgsp1_rep	CDS	28427826	28427889	.	-	1	Parent=Os04t0566500-05
Chr04	irgsp1_rep	CDS	28427613	28427748	.	-	0	Parent=Os04t0566500-05
Chr04	irgsp1_rep	CDS	28427443	28427516	.	-	2	Parent=Os04t0566500-05
Chr04	irgsp1_rep	CDS	28427261	28427355	.	-	0	Parent=Os04t0566500-05
Chr04	irgsp1_rep	CDS	28427152	28427183	.	-	1	Parent=Os04t0566500-05
Chr04	irgsp1_rep	CDS	28426831	28427042	.	-	2	Parent=Os04t0566500-05
Chr04	irgsp1_rep	three_prime_UTR	28426525	28426830	.	-	.	Parent=Os04t0566500-05
Chr04	irgsp1_rep	mRNA	28426818	28428218	.	+	.	ID=Os04t0566550-00;Name=Os04t0566550-00;Locus_id=Os04g0566550;Note=Hypothetical gene.;Transcript_evidence=BT016774 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0566550-00
Chr04	irgsp1_rep	five_prime_UTR	28426818	28427065	.	+	.	Parent=Os04t0566550-00
Chr04	irgsp1_rep	five_prime_UTR	28427253	28427350	.	+	.	Parent=Os04t0566550-00
Chr04	irgsp1_rep	five_prime_UTR	28427433	28427512	.	+	.	Parent=Os04t0566550-00
Chr04	irgsp1_rep	five_prime_UTR	28427616	28427682	.	+	.	Parent=Os04t0566550-00
Chr04	irgsp1_rep	CDS	28427683	28427729	.	+	0	Parent=Os04t0566550-00
Chr04	irgsp1_rep	CDS	28427810	28427936	.	+	1	Parent=Os04t0566550-00
Chr04	irgsp1_rep	CDS	28428136	28428218	.	+	0	Parent=Os04t0566550-00
Chr04	irgsp1_rep	mRNA	28470386	28474272	.	+	.	ID=Os04t0566600-01;Name=Os04t0566600-01;Locus_id=Os04g0566600;RAP-DB Gene Symbol Synonym(s)=MOF1%2C MFS2;RAP-DB Gene Name Synonym(s)=MORE FLORET 1%2C MULTI-FLORET SPIKELET2;Oryzabase Gene Name Synonym(s)=OsMPH1 homologue;Note=MYB transcription factor%2C Regulation of organ identity and spikelet determinacy;Transcript_evidence=AK101849;ORF_evidence=Q7XUI6;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeobox-like domain superfamily (IPR009057),Myb domain%2C plants (IPR006447);NIAS_FLcDNA=J033069K05;Manual Curation=July 31%2C 2020;Literature_PMID=32723808,32680975;Oryzabase=21924;Expression=AK101849;TENOR=Os04t0566600-01;KEGG=Os04t0566600-01;Subcellular location=nucleus (GO:0005634)
Chr04	irgsp1_rep	five_prime_UTR	28470386	28470691	.	+	.	Parent=Os04t0566600-01
Chr04	irgsp1_rep	CDS	28470692	28470830	.	+	0	Parent=Os04t0566600-01
Chr04	irgsp1_rep	CDS	28471258	28471334	.	+	2	Parent=Os04t0566600-01
Chr04	irgsp1_rep	CDS	28471441	28471489	.	+	0	Parent=Os04t0566600-01
Chr04	irgsp1_rep	CDS	28472014	28472098	.	+	2	Parent=Os04t0566600-01
Chr04	irgsp1_rep	CDS	28472237	28472486	.	+	1	Parent=Os04t0566600-01
Chr04	irgsp1_rep	CDS	28473784	28474104	.	+	0	Parent=Os04t0566600-01
Chr04	irgsp1_rep	three_prime_UTR	28474105	28474272	.	+	.	Parent=Os04t0566600-01
Chr04	irgsp1_rep	mRNA	28479505	28480356	.	-	.	ID=Os04t0566700-01;Name=Os04t0566700-01;Locus_id=Os04g0566700;Note=Similar to Mitochondrial import inner membrane translocase subunit tim23.;Transcript_evidence=AK108551 (DDBJ%2C Best hit);ORF_evidence=B6T238 (UniProt);NIAS_FLcDNA=002-144-E05;TENOR=Os04t0566700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	28480326	28480356	.	-	.	Parent=Os04t0566700-01
Chr04	irgsp1_rep	CDS	28479762	28480325	.	-	0	Parent=Os04t0566700-01
Chr04	irgsp1_rep	three_prime_UTR	28479505	28479761	.	-	.	Parent=Os04t0566700-01
Chr04	irgsp1_rep	mRNA	28479892	28480360	.	+	.	ID=Os04t0566750-00;Name=Os04t0566750-00;Locus_id=Os04g0566750;Note=Hypothetical protein.;Transcript_evidence=EU944584 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0566750-00
Chr04	irgsp1_rep	five_prime_UTR	28479892	28479893	.	+	.	Parent=Os04t0566750-00
Chr04	irgsp1_rep	CDS	28479894	28480360	.	+	0	Parent=Os04t0566750-00
Chr04	irgsp1_rep	mRNA	28484047	28488670	.	-	.	ID=Os04t0566800-01;Name=Os04t0566800-01;Locus_id=Os04g0566800;Note=Spc97/Spc98 family protein.;Transcript_evidence=AK060279 (DDBJ%2C Best hit);ORF_evidence=Q7XUI5 (UniProt);GO=Biological Process: microtubule cytoskeleton organization (GO:0000226),Cellular Component: spindle pole (GO:0000922),Cellular Component: microtubule organizing center (GO:0005815);InterPro=Spc97/Spc98 (IPR007259);NIAS_FLcDNA=001-006-A07;TENOR=Os04t0566800-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	28488670	28488670	.	-	.	Parent=Os04t0566800-01
Chr04	irgsp1_rep	CDS	28488627	28488669	.	-	0	Parent=Os04t0566800-01
Chr04	irgsp1_rep	CDS	28488372	28488535	.	-	2	Parent=Os04t0566800-01
Chr04	irgsp1_rep	CDS	28488006	28488085	.	-	0	Parent=Os04t0566800-01
Chr04	irgsp1_rep	CDS	28485714	28485813	.	-	1	Parent=Os04t0566800-01
Chr04	irgsp1_rep	CDS	28485487	28485548	.	-	0	Parent=Os04t0566800-01
Chr04	irgsp1_rep	CDS	28485243	28485399	.	-	1	Parent=Os04t0566800-01
Chr04	irgsp1_rep	CDS	28484588	28484758	.	-	0	Parent=Os04t0566800-01
Chr04	irgsp1_rep	three_prime_UTR	28484047	28484587	.	-	.	Parent=Os04t0566800-01
Chr04	irgsp1_rep	mRNA	28489410	28494426	.	-	.	ID=Os04t0566900-01;Name=Os04t0566900-01;Locus_id=Os04g0566900;Note=Spc97/Spc98 domain containing protein.;Transcript_evidence=AK072344 (DDBJ%2C Best hit);ORF_evidence=Q7XUI5 (UniProt);GO=Biological Process: microtubule cytoskeleton organization (GO:0000226),Cellular Component: spindle pole (GO:0000922),Cellular Component: microtubule organizing center (GO:0005815);InterPro=Spc97/Spc98 (IPR007259);NIAS_FLcDNA=J023049A03;Expression=AK072344;TENOR=Os04t0566900-01;KEGG=Os04t0566900-01
Chr04	irgsp1_rep	five_prime_UTR	28494205	28494426	.	-	.	Parent=Os04t0566900-01
Chr04	irgsp1_rep	CDS	28494031	28494204	.	-	0	Parent=Os04t0566900-01
Chr04	irgsp1_rep	CDS	28492744	28493481	.	-	0	Parent=Os04t0566900-01
Chr04	irgsp1_rep	three_prime_UTR	28491952	28492743	.	-	.	Parent=Os04t0566900-01
Chr04	irgsp1_rep	three_prime_UTR	28490871	28491553	.	-	.	Parent=Os04t0566900-01
Chr04	irgsp1_rep	three_prime_UTR	28489410	28490663	.	-	.	Parent=Os04t0566900-01
Chr04	irgsp1_rep	mRNA	28500006	28502492	.	-	.	ID=Os04t0567200-01;Name=Os04t0567200-01;Locus_id=Os04g0567200;CGSNL Gene Symbol=ALMT8;CGSNL Gene Name=ALUMINUM-ACTIVATED MALATE TRANSPORTER 8;Oryzabase Gene Symbol Synonym(s)=OsALMT8;Oryzabase Gene Name Synonym(s)=Aluminum-activated malate transporter 8;Note=Uncharacterised protein family UPF0005 domain containing protein.;Transcript_evidence=AK110383 (DDBJ%2C Best hit);ORF_evidence=A5YBP9 (UniProt);GO=Biological Process: response to aluminum ion (GO:0010044);InterPro=Malate transporter%2C aliminium toerance (IPR020966);NIAS_FLcDNA=002-165-D04;Oryzabase=22157;Expression=AK110383;TENOR=Os04t0567200-01;KEGG=Os04t0567200-01
Chr04	irgsp1_rep	five_prime_UTR	28502286	28502492	.	-	.	Parent=Os04t0567200-01
Chr04	irgsp1_rep	CDS	28501934	28502285	.	-	0	Parent=Os04t0567200-01
Chr04	irgsp1_rep	CDS	28501687	28501827	.	-	2	Parent=Os04t0567200-01
Chr04	irgsp1_rep	CDS	28500484	28501532	.	-	2	Parent=Os04t0567200-01
Chr04	irgsp1_rep	three_prime_UTR	28500006	28500483	.	-	.	Parent=Os04t0567200-01
Chr04	irgsp1_rep	mRNA	28500696	28501544	.	+	.	ID=Os04t0567350-00;Name=Os04t0567350-00;Locus_id=Os04g0567350;Note=Hypothetical gene.;Transcript_evidence=AK335180 (DDBJ);ORF_evidence=longestORF;InterPro=RNA 3'-terminal phosphate cyclase-like%2C conserved site (IPR020719);TENOR=Os04t0567350-00
Chr04	irgsp1_rep	five_prime_UTR	28500696	28500696	.	+	.	Parent=Os04t0567350-00
Chr04	irgsp1_rep	CDS	28500697	28501544	.	+	0	Parent=Os04t0567350-00
Chr04	irgsp1_rep	mRNA	28521890	28525648	.	+	.	ID=Os04t0567700-01;Name=Os04t0567700-01;Locus_id=Os04g0567700;Note=ORMDL family protein.;Transcript_evidence=AK064998 (DDBJ%2C Best hit);ORF_evidence=Q01K71 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=ORMDL (IPR007203);NIAS_FLcDNA=J013001D24;Expression=AK064998;TENOR=Os04t0567700-01;KEGG=Os04t0567700-01
Chr04	irgsp1_rep	five_prime_UTR	28521890	28522246	.	+	.	Parent=Os04t0567700-01
Chr04	irgsp1_rep	CDS	28522247	28522432	.	+	0	Parent=Os04t0567700-01
Chr04	irgsp1_rep	CDS	28523593	28523741	.	+	0	Parent=Os04t0567700-01
Chr04	irgsp1_rep	CDS	28525178	28525316	.	+	1	Parent=Os04t0567700-01
Chr04	irgsp1_rep	three_prime_UTR	28525317	28525648	.	+	.	Parent=Os04t0567700-01
Chr04	irgsp1_rep	mRNA	28534919	28536474	.	-	.	ID=Os04t0567800-01;Name=Os04t0567800-01;Locus_id=Os04g0567800;CGSNL Gene Symbol=DOF18;CGSNL Gene Name=DNA BINDING WITH ONE FINGER 18;Oryzabase Gene Symbol Synonym(s)=OsDof18%2C Dof18%2C OsDof-18%2C DLN119%2C OsDLN119;Oryzabase Gene Name Synonym(s)=Dof zinc factor 18%2C Dof transcription factor 18%2C DLN repressor 119%2C DLN motif protein 119;Note=Similar to OSIGBa0103M18.3 protein.;Transcript_evidence=AK060659 (DDBJ%2C Best hit);ORF_evidence=Q01K70 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C Dof-type (IPR003851);NIAS_FLcDNA=001-028-A11;Oryzabase=8808;TENOR=Os04t0567800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	28536347	28536474	.	-	.	Parent=Os04t0567800-01
Chr04	irgsp1_rep	CDS	28535255	28536346	.	-	0	Parent=Os04t0567800-01
Chr04	irgsp1_rep	three_prime_UTR	28534919	28535254	.	-	.	Parent=Os04t0567800-01
Chr04	irgsp1_rep	mRNA	28563909	28569512	.	+	.	ID=Os04t0568300-01;Name=Os04t0568300-01;Locus_id=Os04g0568300;Note=Hypothetical gene.;Transcript_evidence=AK072175 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013147I02;Expression=AK072175;TENOR=Os04t0568300-01;KEGG=Os04t0568300-01
Chr04	irgsp1_rep	five_prime_UTR	28563909	28563909	.	+	.	Parent=Os04t0568300-01
Chr04	irgsp1_rep	CDS	28563910	28564138	.	+	0	Parent=Os04t0568300-01
Chr04	irgsp1_rep	CDS	28568288	28568451	.	+	2	Parent=Os04t0568300-01
Chr04	irgsp1_rep	three_prime_UTR	28568452	28569512	.	+	.	Parent=Os04t0568300-01
Chr04	irgsp1_rep	mRNA	28564644	28567732	.	+	.	ID=Os04t0568400-01;Name=Os04t0568400-01;Locus_id=Os04g0568400;Oryzabase Gene Symbol Synonym(s)=OsWD40-106;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK103546 (DDBJ%2C Best hit);ORF_evidence=Q01JP7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J033132E13;Oryzabase=10787;Expression=AK103546;TENOR=Os04t0568400-01;KEGG=Os04t0568400-01
Chr04	irgsp1_rep	five_prime_UTR	28564644	28564710	.	+	.	Parent=Os04t0568400-01
Chr04	irgsp1_rep	CDS	28564711	28565739	.	+	0	Parent=Os04t0568400-01
Chr04	irgsp1_rep	CDS	28565846	28565936	.	+	0	Parent=Os04t0568400-01
Chr04	irgsp1_rep	CDS	28566024	28566181	.	+	2	Parent=Os04t0568400-01
Chr04	irgsp1_rep	CDS	28566276	28566327	.	+	0	Parent=Os04t0568400-01
Chr04	irgsp1_rep	CDS	28566440	28566519	.	+	2	Parent=Os04t0568400-01
Chr04	irgsp1_rep	CDS	28566623	28566716	.	+	0	Parent=Os04t0568400-01
Chr04	irgsp1_rep	CDS	28566811	28567403	.	+	2	Parent=Os04t0568400-01
Chr04	irgsp1_rep	three_prime_UTR	28567404	28567732	.	+	.	Parent=Os04t0568400-01
Chr04	irgsp1_rep	mRNA	28573056	28573653	.	-	.	ID=Os04t0568500-00;Name=Os04t0568500-00;Locus_id=Os04g0568500;Note=Conserved hypothetical protein.;Transcript_evidence=AK363942 (DDBJ);ORF_evidence=F2DJ74 (UniProt);TENOR=Os04t0568500-00
Chr04	irgsp1_rep	five_prime_UTR	28573539	28573653	.	-	.	Parent=Os04t0568500-00
Chr04	irgsp1_rep	CDS	28573056	28573538	.	-	0	Parent=Os04t0568500-00
Chr04	irgsp1_rep	mRNA	28573085	28573844	.	+	.	ID=Os04t0568600-00;Name=Os04t0568600-00;Locus_id=Os04g0568600;Note=Similar to 6-phospho-3-hexuloisomerase.;Transcript_evidence=CT836509 (DDBJ%2C Best hit);ORF_evidence=Q01JP6 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: sugar binding (GO:0005529);InterPro=Sugar isomerase (SIS) (IPR001347);TENOR=Os04t0568600-00;KEGG=Os04t0568600-00
Chr04	irgsp1_rep	five_prime_UTR	28573085	28573146	.	+	.	Parent=Os04t0568600-00
Chr04	irgsp1_rep	CDS	28573147	28573734	.	+	0	Parent=Os04t0568600-00
Chr04	irgsp1_rep	three_prime_UTR	28573735	28573844	.	+	.	Parent=Os04t0568600-00
Chr04	irgsp1_rep	mRNA	28574427	28575697	.	+	.	ID=Os04t0568700-00;Name=Os04t0568700-00;Locus_id=Os04g0568700;CGSNL Gene Symbol=HSFB2A;CGSNL Gene Name=HEAT STRESS TRANSCRIPTION FACTOR B2A;Oryzabase Gene Symbol Synonym(s)=HSfB2a%2C OsHsfB2a%2C OsHsf-14%2C rHsf1%2C HSF1%2C HSF14%2C OsHSF14;Oryzabase Gene Name Synonym(s)=Heat stress transcription factor B2a%2C Heat stress transcription factor B-2a%2C Heat stress transcription factor 14%2C Heat stress transcription factor 1;Note=Similar to Heat stress transcription factor Spl7 (Heat shock transcription factor) (Heat shock factor RHSF10).;Transcript_evidence=AY344483 (DDBJ%2C Best hit);ORF_evidence=Q01JP5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Heat shock factor (HSF)-type%2C DNA-binding (IPR000232),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);Oryzabase=8561;Expression=AY344483;TENOR=Os04t0568700-00;KEGG=Os04t0568700-00
Chr04	irgsp1_rep	five_prime_UTR	28574427	28574496	.	+	.	Parent=Os04t0568700-00
Chr04	irgsp1_rep	CDS	28574497	28574703	.	+	0	Parent=Os04t0568700-00
Chr04	irgsp1_rep	CDS	28574806	28575516	.	+	0	Parent=Os04t0568700-00
Chr04	irgsp1_rep	three_prime_UTR	28575517	28575697	.	+	.	Parent=Os04t0568700-00
Chr04	irgsp1_rep	mRNA	28574502	28575481	.	-	.	ID=Os04t0568751-00;Name=Os04t0568751-00;Locus_id=Os04g0568751;Note=Hypothetical protein.;Transcript_evidence=tplb0033f11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0568751-00
Chr04	irgsp1_rep	five_prime_UTR	28575481	28575481	.	-	.	Parent=Os04t0568751-00
Chr04	irgsp1_rep	CDS	28574806	28575480	.	-	0	Parent=Os04t0568751-00
Chr04	irgsp1_rep	CDS	28574502	28574703	.	-	0	Parent=Os04t0568751-00
Chr04	irgsp1_rep	mRNA	28583461	28588279	.	-	.	ID=Os04t0568800-01;Name=Os04t0568800-01;Locus_id=Os04g0568800;CGSNL Gene Symbol=DUF810.3;CGSNL Gene Name=DUF810 FAMILY MEMBER 3;Oryzabase Gene Symbol Synonym(s)=OsDUF810.3;Oryzabase Gene Name Synonym(s)=domains of unknown function 810.3%2C DUF810 family member 3;Note=Similar to OSIGBa0139P06.4 protein.;Transcript_evidence=AK106571 (DDBJ%2C Best hit);ORF_evidence=Q01JP4 (UniProt);InterPro=Protein of unknown function DUF810 (IPR008528);NIAS_FLcDNA=002-111-A05;Oryzabase=22673;Expression=AK106571;TENOR=Os04t0568800-01;KEGG=Os04t0568800-01
Chr04	irgsp1_rep	five_prime_UTR	28588279	28588279	.	-	.	Parent=Os04t0568800-01
Chr04	irgsp1_rep	CDS	28588123	28588278	.	-	0	Parent=Os04t0568800-01
Chr04	irgsp1_rep	CDS	28587839	28587940	.	-	0	Parent=Os04t0568800-01
Chr04	irgsp1_rep	CDS	28587026	28587376	.	-	0	Parent=Os04t0568800-01
Chr04	irgsp1_rep	three_prime_UTR	28586169	28587025	.	-	.	Parent=Os04t0568800-01
Chr04	irgsp1_rep	three_prime_UTR	28584733	28584819	.	-	.	Parent=Os04t0568800-01
Chr04	irgsp1_rep	three_prime_UTR	28584454	28584639	.	-	.	Parent=Os04t0568800-01
Chr04	irgsp1_rep	three_prime_UTR	28583461	28584369	.	-	.	Parent=Os04t0568800-01
Chr04	irgsp1_rep	mRNA	28589243	28591277	.	-	.	ID=Os04t0568850-00;Name=Os04t0568850-00;Locus_id=Os04g0568850;Note=Similar to OSIGBa0139P06.4 protein.;Transcript_evidence=CT828553 (DDBJ%2C Best hit);ORF_evidence=Q01JP4 (UniProt);TENOR=Os04t0568850-00;KEGG=Os04t0568850-00
Chr04	irgsp1_rep	five_prime_UTR	28591071	28591277	.	-	.	Parent=Os04t0568850-00
Chr04	irgsp1_rep	CDS	28590917	28591070	.	-	0	Parent=Os04t0568850-00
Chr04	irgsp1_rep	CDS	28590741	28590805	.	-	2	Parent=Os04t0568850-00
Chr04	irgsp1_rep	CDS	28589638	28589908	.	-	0	Parent=Os04t0568850-00
Chr04	irgsp1_rep	CDS	28589382	28589445	.	-	2	Parent=Os04t0568850-00
Chr04	irgsp1_rep	CDS	28589243	28589270	.	-	1	Parent=Os04t0568850-00
Chr04	irgsp1_rep	mRNA	28592081	28595422	.	-	.	ID=Os04t0568900-01;Name=Os04t0568900-01;Locus_id=Os04g0568900;Note=Similar to RING finger protein 6 (RING-H2 protein).;Transcript_evidence=AK070267 (DDBJ%2C Best hit);ORF_evidence=Q01JP3 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J023044P07;Expression=AK070267;TENOR=Os04t0568900-01;KEGG=Os04t0568900-01
Chr04	irgsp1_rep	CDS	28595094	28595422	.	-	0	Parent=Os04t0568900-01
Chr04	irgsp1_rep	CDS	28593621	28593740	.	-	1	Parent=Os04t0568900-01
Chr04	irgsp1_rep	CDS	28593389	28593521	.	-	1	Parent=Os04t0568900-01
Chr04	irgsp1_rep	CDS	28593113	28593277	.	-	0	Parent=Os04t0568900-01
Chr04	irgsp1_rep	CDS	28592465	28592641	.	-	0	Parent=Os04t0568900-01
Chr04	irgsp1_rep	three_prime_UTR	28592081	28592464	.	-	.	Parent=Os04t0568900-01
Chr04	irgsp1_rep	mRNA	28595198	28595688	.	+	.	ID=Os04t0568950-00;Name=Os04t0568950-00;Locus_id=Os04g0568950;Note=Hypothetical gene.;Transcript_evidence=EU941385 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0568950-00;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	28595198	28595688	.	+	0	Parent=Os04t0568950-00
Chr04	irgsp1_rep	mRNA	28597338	28600300	.	+	.	ID=Os04t0569000-01;Name=Os04t0569000-01;Locus_id=Os04g0569000;CGSNL Gene Symbol=RFC4;CGSNL Gene Name=REPLICATION FACTOR C SUBUNIT 4;Oryzabase Gene Symbol Synonym(s)=OsRFC4;Oryzabase Gene Name Synonym(s)=replication factor C subunit 4%2C replication factor C4;Note=Similar to Replication factor C 40kDa subunit.;Transcript_evidence=AK069025 (DDBJ%2C Best hit);ORF_evidence=Q948P2 (UniProt);GO=Biological Process: DNA replication (GO:0006260),Cellular Component: DNA replication factor C complex (GO:0005663),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA clamp loader activity (GO:0003689),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),DNA polymerase III%2C clamp loader complex%2C gamma/delta/delta subunit%2C C-terminal (IPR008921),Replication factor C (IPR013748);NIAS_FLcDNA=J023002F18;Oryzabase=21295;TENOR=Os04t0569000-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	28597338	28597374	.	+	.	Parent=Os04t0569000-01
Chr04	irgsp1_rep	CDS	28597375	28597542	.	+	0	Parent=Os04t0569000-01
Chr04	irgsp1_rep	CDS	28597652	28597758	.	+	0	Parent=Os04t0569000-01
Chr04	irgsp1_rep	CDS	28597870	28597971	.	+	1	Parent=Os04t0569000-01
Chr04	irgsp1_rep	CDS	28598519	28598714	.	+	1	Parent=Os04t0569000-01
Chr04	irgsp1_rep	CDS	28599424	28599552	.	+	0	Parent=Os04t0569000-01
Chr04	irgsp1_rep	CDS	28599629	28599823	.	+	0	Parent=Os04t0569000-01
Chr04	irgsp1_rep	CDS	28599915	28600025	.	+	0	Parent=Os04t0569000-01
Chr04	irgsp1_rep	three_prime_UTR	28600026	28600300	.	+	.	Parent=Os04t0569000-01
Chr04	irgsp1_rep	mRNA	28600699	28607038	.	-	.	ID=Os04t0569100-01;Name=Os04t0569100-01;Locus_id=Os04g0569100;CGSNL Gene Symbol=ROC4;CGSNL Gene Name=RICE OUTMOST CELL-SPECIFIC GENE 4;Oryzabase Gene Symbol Synonym(s)=Roc4(t)%2C Roc4%2C GL2-4%2C OsROC4%2C OsGL2-4;Oryzabase Gene Name Synonym(s)=Rice outmost cell-specific gene 4(t)%2C Rice outermost cell-specific gene-4%2C Homeobox-leucine zipper protein ROC4%2C Homeodomain transcription factor ROC4%2C HD-ZIP protein ROC4%2C Protein RICE OUTERMOST CELL-SPECIFIC 4%2C GLABRA 2-like homeobox protein 4;Note=Similar to OCL1 homeobox protein.;Transcript_evidence=AK112099 (DDBJ%2C Best hit),AK111914 (DDBJ%2C Best hit);ORF_evidence=Q7Y0V9-2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: transcription regulatory region sequence-specific DNA binding (GO:0000976),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Helix-turn-helix motif%2C lambda-like repressor (IPR000047),Homeobox (IPR001356),Lipid-binding START (IPR002913),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Homeobox%2C conserved site (IPR017970);NIAS_FLcDNA=002-108-E06,J033128F17;Oryzabase=2865;TENOR=Os04t0569100-01;Subcellular location=nucleus (GO:0005634)
Chr04	irgsp1_rep	five_prime_UTR	28606903	28607038	.	-	.	Parent=Os04t0569100-01
Chr04	irgsp1_rep	CDS	28606834	28606902	.	-	0	Parent=Os04t0569100-01
Chr04	irgsp1_rep	CDS	28606419	28606711	.	-	0	Parent=Os04t0569100-01
Chr04	irgsp1_rep	CDS	28606204	28606321	.	-	1	Parent=Os04t0569100-01
Chr04	irgsp1_rep	CDS	28605379	28606086	.	-	0	Parent=Os04t0569100-01
Chr04	irgsp1_rep	CDS	28605193	28605294	.	-	0	Parent=Os04t0569100-01
Chr04	irgsp1_rep	CDS	28604867	28605094	.	-	0	Parent=Os04t0569100-01
Chr04	irgsp1_rep	CDS	28602995	28603172	.	-	0	Parent=Os04t0569100-01
Chr04	irgsp1_rep	CDS	28602548	28602921	.	-	2	Parent=Os04t0569100-01
Chr04	irgsp1_rep	CDS	28601230	28601580	.	-	0	Parent=Os04t0569100-01
Chr04	irgsp1_rep	three_prime_UTR	28600699	28601229	.	-	.	Parent=Os04t0569100-01
Chr04	irgsp1_rep	mRNA	28600699	28607038	.	-	.	ID=Os04t0569100-02;Name=Os04t0569100-02;Locus_id=Os04g0569100;RAP-DB Gene Symbol Synonym(s)=ROC4%2C Roc4;RAP-DB Gene Name Synonym(s)=RICE OUTMOST CELL-SPECIFIC GENE 4%2C Rice outermost cell-specific gene 4;CGSNL Gene Symbol=ROC4;CGSNL Gene Name=RICE OUTMOST CELL-SPECIFIC GENE 4;Oryzabase Gene Symbol Synonym(s)=Roc4(t)%2C Roc4%2C GL2-4%2C OsROC4%2C OsGL2-4;Oryzabase Gene Name Synonym(s)=Rice outmost cell-specific gene 4(t)%2C Rice outermost cell-specific gene-4%2C Homeobox-leucine zipper protein ROC4%2C Homeodomain transcription factor ROC4%2C HD-ZIP protein ROC4%2C Protein RICE OUTERMOST CELL-SPECIFIC 4%2C GLABRA 2-like homeobox protein 4;Note=Homeodomain-leucine zipper IV protein%2C GL2-type homeobox protein%2C Transcription factor%2C Promotion of flowering time preferentially under long days%2C Positive regulation of cuticular wax biosynthesis%2C Drought stress response;Transcript_evidence=AB101647;ORF_evidence=Q7Y0V9;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: lipid binding (GO:0008289),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox-like domain superfamily (IPR009057),START-like domain superfamily (IPR023393),Homeobox domain (IPR001356),START domain (IPR002913),Helix-turn-helix motif (IPR000047),Homeobox%2C conserved site (IPR017970);Manual Curation=February 15%2C 2018;Literature_PMID=29237723,27717449,DOI:10.1270/jsbbs.53.245;Oryzabase=2865;Subcellular location=nucleus (GO:0005634)
Chr04	irgsp1_rep	five_prime_UTR	28606903	28607038	.	-	.	Parent=Os04t0569100-02
Chr04	irgsp1_rep	CDS	28606834	28606902	.	-	0	Parent=Os04t0569100-02
Chr04	irgsp1_rep	CDS	28606419	28606711	.	-	0	Parent=Os04t0569100-02
Chr04	irgsp1_rep	CDS	28606204	28606321	.	-	1	Parent=Os04t0569100-02
Chr04	irgsp1_rep	CDS	28605379	28606086	.	-	0	Parent=Os04t0569100-02
Chr04	irgsp1_rep	CDS	28605172	28605294	.	-	0	Parent=Os04t0569100-02
Chr04	irgsp1_rep	CDS	28604867	28605094	.	-	0	Parent=Os04t0569100-02
Chr04	irgsp1_rep	CDS	28602995	28603172	.	-	0	Parent=Os04t0569100-02
Chr04	irgsp1_rep	CDS	28602548	28602921	.	-	2	Parent=Os04t0569100-02
Chr04	irgsp1_rep	CDS	28601230	28601580	.	-	0	Parent=Os04t0569100-02
Chr04	irgsp1_rep	three_prime_UTR	28600699	28601229	.	-	.	Parent=Os04t0569100-02
Chr04	irgsp1_rep	mRNA	28643350	28645093	.	+	.	ID=Os04t0569300-01;Name=Os04t0569300-01;Locus_id=Os04g0569300;Oryzabase Gene Symbol Synonym(s)=OsRhmbd11%2C RHMBD11;Oryzabase Gene Name Synonym(s)=Rhomboid 11%2C RHOMBOID 11;Note=Similar to Membrane protein.;Transcript_evidence=AK058648 (DDBJ%2C Best hit);ORF_evidence=Q01JP0 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Cellular Component: integral to membrane (GO:0016021),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S54%2C rhomboid (IPR002610),Peptidase S54%2C rhomboid domain (IPR022764);NIAS_FLcDNA=001-018-E11;Oryzabase=20067;Expression=AK058648;TENOR=Os04t0569300-01;KEGG=Os04t0569300-01
Chr04	irgsp1_rep	five_prime_UTR	28643350	28643461	.	+	.	Parent=Os04t0569300-01
Chr04	irgsp1_rep	CDS	28643462	28643811	.	+	0	Parent=Os04t0569300-01
Chr04	irgsp1_rep	CDS	28643899	28644062	.	+	1	Parent=Os04t0569300-01
Chr04	irgsp1_rep	CDS	28644149	28644315	.	+	2	Parent=Os04t0569300-01
Chr04	irgsp1_rep	CDS	28644426	28644661	.	+	0	Parent=Os04t0569300-01
Chr04	irgsp1_rep	CDS	28644782	28644893	.	+	1	Parent=Os04t0569300-01
Chr04	irgsp1_rep	three_prime_UTR	28644894	28645093	.	+	.	Parent=Os04t0569300-01
Chr04	irgsp1_rep	mRNA	28643382	28645057	.	+	.	ID=Os04t0569300-02;Name=Os04t0569300-02;Locus_id=Os04g0569300;Oryzabase Gene Symbol Synonym(s)=OsRhmbd11%2C RHMBD11;Oryzabase Gene Name Synonym(s)=Rhomboid 11%2C RHOMBOID 11;Note=Similar to Membrane protein.;Transcript_evidence=AK099082 (DDBJ%2C Best hit);ORF_evidence=Q01JP0 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Cellular Component: integral to membrane (GO:0016021),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S54%2C rhomboid (IPR002610),Peptidase S54%2C rhomboid domain (IPR022764);NIAS_FLcDNA=J023002M21;Oryzabase=20067;Expression=AK099082;TENOR=Os04t0569300-02;KEGG=Os04t0569300-02
Chr04	irgsp1_rep	five_prime_UTR	28643382	28643461	.	+	.	Parent=Os04t0569300-02
Chr04	irgsp1_rep	CDS	28643462	28643811	.	+	0	Parent=Os04t0569300-02
Chr04	irgsp1_rep	CDS	28643899	28644062	.	+	1	Parent=Os04t0569300-02
Chr04	irgsp1_rep	CDS	28644149	28644315	.	+	2	Parent=Os04t0569300-02
Chr04	irgsp1_rep	CDS	28644426	28644661	.	+	0	Parent=Os04t0569300-02
Chr04	irgsp1_rep	CDS	28644782	28644893	.	+	1	Parent=Os04t0569300-02
Chr04	irgsp1_rep	three_prime_UTR	28644894	28645057	.	+	.	Parent=Os04t0569300-02
Chr04	irgsp1_rep	mRNA	28645462	28649501	.	-	.	ID=Os04t0569400-00;Name=Os04t0569400-00;Locus_id=Os04g0569400;Note=Similar to OSIGBa0139P06.9 protein.;Transcript_evidence=AK365201 (DDBJ);ORF_evidence=Q01JN9 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Protein of unknown function DUF248%2C methyltransferase putative (IPR004159);TENOR=Os04t0569400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	28649460	28649501	.	-	.	Parent=Os04t0569400-00
Chr04	irgsp1_rep	CDS	28649061	28649459	.	-	0	Parent=Os04t0569400-00
Chr04	irgsp1_rep	CDS	28648211	28648414	.	-	0	Parent=Os04t0569400-00
Chr04	irgsp1_rep	CDS	28647916	28648126	.	-	0	Parent=Os04t0569400-00
Chr04	irgsp1_rep	CDS	28647582	28647843	.	-	2	Parent=Os04t0569400-00
Chr04	irgsp1_rep	CDS	28647082	28647453	.	-	1	Parent=Os04t0569400-00
Chr04	irgsp1_rep	CDS	28646463	28646558	.	-	1	Parent=Os04t0569400-00
Chr04	irgsp1_rep	CDS	28645797	28646013	.	-	1	Parent=Os04t0569400-00
Chr04	irgsp1_rep	three_prime_UTR	28645462	28645796	.	-	.	Parent=Os04t0569400-00
Chr04	irgsp1_rep	mRNA	28645462	28649483	.	+	.	ID=Os04t0569500-00;Name=Os04t0569500-00;Locus_id=Os04g0569500;Note=Hypothetical protein.;Transcript_evidence=tplb0021o10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0569500-00
Chr04	irgsp1_rep	five_prime_UTR	28645462	28646013	.	+	.	Parent=Os04t0569500-00
Chr04	irgsp1_rep	five_prime_UTR	28646463	28646556	.	+	.	Parent=Os04t0569500-00
Chr04	irgsp1_rep	five_prime_UTR	28647080	28647448	.	+	.	Parent=Os04t0569500-00
Chr04	irgsp1_rep	five_prime_UTR	28647577	28647849	.	+	.	Parent=Os04t0569500-00
Chr04	irgsp1_rep	five_prime_UTR	28647921	28648123	.	+	.	Parent=Os04t0569500-00
Chr04	irgsp1_rep	five_prime_UTR	28648208	28648363	.	+	.	Parent=Os04t0569500-00
Chr04	irgsp1_rep	CDS	28648364	28648414	.	+	0	Parent=Os04t0569500-00
Chr04	irgsp1_rep	CDS	28649061	28649483	.	+	0	Parent=Os04t0569500-00
Chr04	irgsp1_rep	mRNA	28663895	28666438	.	-	.	ID=Os04t0569900-01;Name=Os04t0569900-01;Locus_id=Os04g0569900;Note=IQ calmodulin-binding region domain containing protein.;Transcript_evidence=AK100392 (DDBJ%2C Best hit);ORF_evidence=Q01J01 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);NIAS_FLcDNA=J023086B08;Expression=AK100392;TENOR=Os04t0569900-01;KEGG=Os04t0569900-01
Chr04	irgsp1_rep	five_prime_UTR	28666271	28666438	.	-	.	Parent=Os04t0569900-01
Chr04	irgsp1_rep	CDS	28665857	28666270	.	-	0	Parent=Os04t0569900-01
Chr04	irgsp1_rep	CDS	28665164	28665340	.	-	0	Parent=Os04t0569900-01
Chr04	irgsp1_rep	CDS	28664939	28665016	.	-	0	Parent=Os04t0569900-01
Chr04	irgsp1_rep	CDS	28664126	28664851	.	-	0	Parent=Os04t0569900-01
Chr04	irgsp1_rep	three_prime_UTR	28663895	28664125	.	-	.	Parent=Os04t0569900-01
Chr04	irgsp1_rep	mRNA	28663895	28665495	.	-	.	ID=Os04t0569900-02;Name=Os04t0569900-02;Locus_id=Os04g0569900;Note=Similar to OSIGBa0111L12.1 protein.;Transcript_evidence=AK059100 (DDBJ%2C Best hit);ORF_evidence=Q01J01 (UniProt);NIAS_FLcDNA=001-022-C12;Expression=AK059100;TENOR=Os04t0569900-02;KEGG=Os04t0569900-02
Chr04	irgsp1_rep	five_prime_UTR	28665059	28665495	.	-	.	Parent=Os04t0569900-02
Chr04	irgsp1_rep	CDS	28664126	28665058	.	-	0	Parent=Os04t0569900-02
Chr04	irgsp1_rep	three_prime_UTR	28663895	28664125	.	-	.	Parent=Os04t0569900-02
Chr04	irgsp1_rep	mRNA	28672747	28677225	.	-	.	ID=Os04t0570000-00;Name=Os04t0570000-00;Locus_id=Os04g0570000;Note=CytoChrome P450 family protein.;Transcript_evidence=AJ459255 (DDBJ%2C Best hit);ORF_evidence=Q7XU38 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);Expression=AJ459255;TENOR=Os04t0570000-00;KEGG=Os04t0570000-00
Chr04	irgsp1_rep	five_prime_UTR	28677119	28677225	.	-	.	Parent=Os04t0570000-00
Chr04	irgsp1_rep	CDS	28676802	28677118	.	-	0	Parent=Os04t0570000-00
Chr04	irgsp1_rep	CDS	28676364	28676688	.	-	1	Parent=Os04t0570000-00
Chr04	irgsp1_rep	CDS	28676100	28676252	.	-	0	Parent=Os04t0570000-00
Chr04	irgsp1_rep	CDS	28675547	28675798	.	-	0	Parent=Os04t0570000-00
Chr04	irgsp1_rep	CDS	28675311	28675400	.	-	0	Parent=Os04t0570000-00
Chr04	irgsp1_rep	CDS	28674776	28674854	.	-	0	Parent=Os04t0570000-00
Chr04	irgsp1_rep	CDS	28674565	28674671	.	-	2	Parent=Os04t0570000-00
Chr04	irgsp1_rep	CDS	28673457	28673587	.	-	0	Parent=Os04t0570000-00
Chr04	irgsp1_rep	CDS	28673280	28673370	.	-	1	Parent=Os04t0570000-00
Chr04	irgsp1_rep	three_prime_UTR	28672747	28673279	.	-	.	Parent=Os04t0570000-00
Chr04	irgsp1_rep	mRNA	28673457	28677014	.	+	.	ID=Os04t0570125-00;Name=Os04t0570125-00;Locus_id=Os04g0570125;Note=Hypothetical protein.;Transcript_evidence=tplb0036f19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0570125-00
Chr04	irgsp1_rep	five_prime_UTR	28673457	28673580	.	+	.	Parent=Os04t0570125-00
Chr04	irgsp1_rep	five_prime_UTR	28674556	28674746	.	+	.	Parent=Os04t0570125-00
Chr04	irgsp1_rep	five_prime_UTR	28675305	28675380	.	+	.	Parent=Os04t0570125-00
Chr04	irgsp1_rep	CDS	28675381	28675391	.	+	0	Parent=Os04t0570125-00
Chr04	irgsp1_rep	CDS	28675538	28675802	.	+	1	Parent=Os04t0570125-00
Chr04	irgsp1_rep	CDS	28676104	28676115	.	+	0	Parent=Os04t0570125-00
Chr04	irgsp1_rep	three_prime_UTR	28676116	28676254	.	+	.	Parent=Os04t0570125-00
Chr04	irgsp1_rep	three_prime_UTR	28676366	28676684	.	+	.	Parent=Os04t0570125-00
Chr04	irgsp1_rep	three_prime_UTR	28676794	28677014	.	+	.	Parent=Os04t0570125-00
Chr04	irgsp1_rep	mRNA	28700096	28704779	.	+	.	ID=Os04t0570250-01;Name=Os04t0570250-01;Locus_id=Os04g0570250;Note=Hypothetical gene.;Transcript_evidence=AK288773 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090068D07;TENOR=Os04t0570250-01;KEGG=Os04t0570250-01
Chr04	irgsp1_rep	five_prime_UTR	28700096	28702878	.	+	.	Parent=Os04t0570250-01
Chr04	irgsp1_rep	CDS	28702879	28703283	.	+	0	Parent=Os04t0570250-01
Chr04	irgsp1_rep	three_prime_UTR	28703284	28704779	.	+	.	Parent=Os04t0570250-01
Chr04	irgsp1_rep	mRNA	28704161	28708189	.	-	.	ID=Os04t0570500-01;Name=Os04t0570500-01;Locus_id=Os04g0570500;Oryzabase Gene Symbol Synonym(s)=DWF1%2C DIM/DWF1%2C DIM;Note=CytoChrome P450 family protein.;Transcript_evidence=AK103336 (DDBJ%2C Best hit);ORF_evidence=Q712G4 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: monooxygenase activity (GO:0004497),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group IV (IPR002403),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J033126A02;Oryzabase=14273;Expression=AK103336;TENOR=Os04t0570500-01;KEGG=Os04t0570500-01
Chr04	irgsp1_rep	five_prime_UTR	28708140	28708189	.	-	.	Parent=Os04t0570500-01
Chr04	irgsp1_rep	CDS	28707910	28708139	.	-	0	Parent=Os04t0570500-01
Chr04	irgsp1_rep	CDS	28707444	28707768	.	-	1	Parent=Os04t0570500-01
Chr04	irgsp1_rep	CDS	28707084	28707230	.	-	0	Parent=Os04t0570500-01
Chr04	irgsp1_rep	CDS	28705336	28705587	.	-	0	Parent=Os04t0570500-01
Chr04	irgsp1_rep	CDS	28705159	28705248	.	-	0	Parent=Os04t0570500-01
Chr04	irgsp1_rep	CDS	28704975	28705053	.	-	0	Parent=Os04t0570500-01
Chr04	irgsp1_rep	CDS	28704753	28704859	.	-	2	Parent=Os04t0570500-01
Chr04	irgsp1_rep	CDS	28704493	28704620	.	-	0	Parent=Os04t0570500-01
Chr04	irgsp1_rep	CDS	28704278	28704368	.	-	1	Parent=Os04t0570500-01
Chr04	irgsp1_rep	three_prime_UTR	28704161	28704277	.	-	.	Parent=Os04t0570500-01
Chr04	irgsp1_rep	mRNA	28715533	28720802	.	-	.	ID=Os04t0570600-01;Name=Os04t0570600-01;Locus_id=Os04g0570600;Note=CytoChrome P450 family protein.;Transcript_evidence=AK106747 (DDBJ%2C Best hit);ORF_evidence=Q01IZ7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: monooxygenase activity (GO:0004497),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group IV (IPR002403),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=002-115-C03;Expression=AK106747;TENOR=Os04t0570600-01;KEGG=Os04t0570600-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	28720728	28720802	.	-	.	Parent=Os04t0570600-01
Chr04	irgsp1_rep	CDS	28720516	28720727	.	-	0	Parent=Os04t0570600-01
Chr04	irgsp1_rep	CDS	28720113	28720437	.	-	1	Parent=Os04t0570600-01
Chr04	irgsp1_rep	CDS	28719871	28720017	.	-	0	Parent=Os04t0570600-01
Chr04	irgsp1_rep	CDS	28719509	28719781	.	-	0	Parent=Os04t0570600-01
Chr04	irgsp1_rep	CDS	28719315	28719410	.	-	0	Parent=Os04t0570600-01
Chr04	irgsp1_rep	CDS	28719050	28719128	.	-	0	Parent=Os04t0570600-01
Chr04	irgsp1_rep	CDS	28716583	28716689	.	-	2	Parent=Os04t0570600-01
Chr04	irgsp1_rep	CDS	28716106	28716236	.	-	0	Parent=Os04t0570600-01
Chr04	irgsp1_rep	CDS	28715831	28715921	.	-	1	Parent=Os04t0570600-01
Chr04	irgsp1_rep	three_prime_UTR	28715533	28715830	.	-	.	Parent=Os04t0570600-01
Chr04	irgsp1_rep	mRNA	28715831	28720729	.	+	.	ID=Os04t0570650-00;Name=Os04t0570650-00;Locus_id=Os04g0570650;Note=Hypothetical protein.;Transcript_evidence=tplb0036g18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0570650-00
Chr04	irgsp1_rep	five_prime_UTR	28715831	28715913	.	+	.	Parent=Os04t0570650-00
Chr04	irgsp1_rep	five_prime_UTR	28716095	28716229	.	+	.	Parent=Os04t0570650-00
Chr04	irgsp1_rep	five_prime_UTR	28716572	28716691	.	+	.	Parent=Os04t0570650-00
Chr04	irgsp1_rep	five_prime_UTR	28719052	28719119	.	+	.	Parent=Os04t0570650-00
Chr04	irgsp1_rep	five_prime_UTR	28719307	28719414	.	+	.	Parent=Os04t0570650-00
Chr04	irgsp1_rep	five_prime_UTR	28719515	28719790	.	+	.	Parent=Os04t0570650-00
Chr04	irgsp1_rep	five_prime_UTR	28719884	28719919	.	+	.	Parent=Os04t0570650-00
Chr04	irgsp1_rep	CDS	28719920	28720017	.	+	0	Parent=Os04t0570650-00
Chr04	irgsp1_rep	CDS	28720113	28720430	.	+	1	Parent=Os04t0570650-00
Chr04	irgsp1_rep	CDS	28720509	28720719	.	+	1	Parent=Os04t0570650-00
Chr04	irgsp1_rep	three_prime_UTR	28720720	28720729	.	+	.	Parent=Os04t0570650-00
Chr04	irgsp1_rep	mRNA	28721290	28721813	.	-	.	ID=Os04t0570700-01;Name=Os04t0570700-01;Locus_id=Os04g0570700;Note=Hypothetical protein.;Transcript_evidence=AK063032 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-110-C06;Expression=AK063032;TENOR=Os04t0570700-01;KEGG=Os04t0570700-01
Chr04	irgsp1_rep	five_prime_UTR	28721623	28721813	.	-	.	Parent=Os04t0570700-01
Chr04	irgsp1_rep	CDS	28721365	28721622	.	-	0	Parent=Os04t0570700-01
Chr04	irgsp1_rep	three_prime_UTR	28721290	28721364	.	-	.	Parent=Os04t0570700-01
Chr04	irgsp1_rep	mRNA	28724161	28727491	.	-	.	ID=Os04t0570800-01;Name=Os04t0570800-01;Locus_id=Os04g0570800;Note=Protein of unknown function DUF248%2C methyltransferase putative family protein.;Transcript_evidence=AK099906 (DDBJ%2C Best hit);ORF_evidence=A2Q5C6 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Protein of unknown function DUF248%2C methyltransferase putative (IPR004159);NIAS_FLcDNA=J013116A04;Expression=AK099906;TENOR=Os04t0570800-01;KEGG=Os04t0570800-01
Chr04	irgsp1_rep	five_prime_UTR	28727407	28727491	.	-	.	Parent=Os04t0570800-01
Chr04	irgsp1_rep	CDS	28726675	28727406	.	-	0	Parent=Os04t0570800-01
Chr04	irgsp1_rep	CDS	28725710	28725920	.	-	0	Parent=Os04t0570800-01
Chr04	irgsp1_rep	CDS	28725322	28725625	.	-	2	Parent=Os04t0570800-01
Chr04	irgsp1_rep	CDS	28724835	28725227	.	-	1	Parent=Os04t0570800-01
Chr04	irgsp1_rep	CDS	28724626	28724703	.	-	1	Parent=Os04t0570800-01
Chr04	irgsp1_rep	CDS	28724194	28724416	.	-	1	Parent=Os04t0570800-01
Chr04	irgsp1_rep	three_prime_UTR	28724161	28724193	.	-	.	Parent=Os04t0570800-01
Chr04	irgsp1_rep	mRNA	28722495	28727491	.	-	.	ID=Os04t0570800-02;Name=Os04t0570800-02;Locus_id=Os04g0570800;Note=Protein of unknown function DUF248%2C methyltransferase putative family protein.;Transcript_evidence=AK069684 (DDBJ%2C Best hit);ORF_evidence=A2Q5C6 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Protein of unknown function DUF248%2C methyltransferase putative (IPR004159);NIAS_FLcDNA=J023031N01;Expression=AK069684;TENOR=Os04t0570800-02;KEGG=Os04t0570800-02
Chr04	irgsp1_rep	five_prime_UTR	28727407	28727491	.	-	.	Parent=Os04t0570800-02
Chr04	irgsp1_rep	CDS	28726675	28727406	.	-	0	Parent=Os04t0570800-02
Chr04	irgsp1_rep	CDS	28725710	28725920	.	-	0	Parent=Os04t0570800-02
Chr04	irgsp1_rep	CDS	28725322	28725625	.	-	2	Parent=Os04t0570800-02
Chr04	irgsp1_rep	CDS	28724835	28725227	.	-	1	Parent=Os04t0570800-02
Chr04	irgsp1_rep	CDS	28724626	28724703	.	-	1	Parent=Os04t0570800-02
Chr04	irgsp1_rep	CDS	28724194	28724416	.	-	1	Parent=Os04t0570800-02
Chr04	irgsp1_rep	three_prime_UTR	28723972	28724193	.	-	.	Parent=Os04t0570800-02
Chr04	irgsp1_rep	three_prime_UTR	28723566	28723854	.	-	.	Parent=Os04t0570800-02
Chr04	irgsp1_rep	three_prime_UTR	28722495	28723019	.	-	.	Parent=Os04t0570800-02
Chr04	irgsp1_rep	mRNA	28724216	28727173	.	+	.	ID=Os04t0570850-00;Name=Os04t0570850-00;Locus_id=Os04g0570850;Note=Hypothetical protein.;Transcript_evidence=tplb0038j22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0570850-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	28724216	28724403	.	+	.	Parent=Os04t0570850-00
Chr04	irgsp1_rep	five_prime_UTR	28724615	28724708	.	+	.	Parent=Os04t0570850-00
Chr04	irgsp1_rep	five_prime_UTR	28724838	28725223	.	+	.	Parent=Os04t0570850-00
Chr04	irgsp1_rep	five_prime_UTR	28725310	28725647	.	+	.	Parent=Os04t0570850-00
Chr04	irgsp1_rep	five_prime_UTR	28725732	28725787	.	+	.	Parent=Os04t0570850-00
Chr04	irgsp1_rep	CDS	28725788	28725937	.	+	0	Parent=Os04t0570850-00
Chr04	irgsp1_rep	CDS	28726693	28727173	.	+	0	Parent=Os04t0570850-00
Chr04	irgsp1_rep	mRNA	28744397	28747841	.	+	.	ID=Os04t0571200-01;Name=Os04t0571200-01;Locus_id=Os04g0571200;RAP-DB Gene Symbol Synonym(s)=OsSIRH2-14%2C OsRFPH2-14;Oryzabase Gene Symbol Synonym(s)=OsRFPH2-14;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPH2-14%2C RING-H2 protein 14;Note=RING H2-type E3 ligase%2C Salinity tolerance;Transcript_evidence=AK071401;ORF_evidence=B7EJC9;InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841);NIAS_FLcDNA=J023097G23;Manual Curation=July 22%2C 2019;Literature_PMID=31325169;Oryzabase=11775;TENOR=Os04t0571200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=cytoplasm (GO:0005737), Golgi apparatus (GO:0005794), plasma membrane (GO:0005904)
Chr04	irgsp1_rep	five_prime_UTR	28744397	28744499	.	+	.	Parent=Os04t0571200-01
Chr04	irgsp1_rep	five_prime_UTR	28744866	28744871	.	+	.	Parent=Os04t0571200-01
Chr04	irgsp1_rep	CDS	28744872	28745015	.	+	0	Parent=Os04t0571200-01
Chr04	irgsp1_rep	CDS	28745536	28745767	.	+	0	Parent=Os04t0571200-01
Chr04	irgsp1_rep	CDS	28745867	28745976	.	+	2	Parent=Os04t0571200-01
Chr04	irgsp1_rep	CDS	28746297	28746421	.	+	0	Parent=Os04t0571200-01
Chr04	irgsp1_rep	CDS	28746706	28746814	.	+	1	Parent=Os04t0571200-01
Chr04	irgsp1_rep	CDS	28747409	28747453	.	+	0	Parent=Os04t0571200-01
Chr04	irgsp1_rep	three_prime_UTR	28747454	28747841	.	+	.	Parent=Os04t0571200-01
Chr04	irgsp1_rep	mRNA	28751117	28754394	.	+	.	ID=Os04t0571300-01;Name=Os04t0571300-01;Locus_id=Os04g0571300;Oryzabase Gene Symbol Synonym(s)=OsFbox228%2C Os_F0553;Oryzabase Gene Name Synonym(s)=F-box protein 228;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK064611 (DDBJ%2C Best hit);ORF_evidence=Q01JM6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-113-B11;Oryzabase=17015;Expression=AK064611;TENOR=Os04t0571300-01;KEGG=Os04t0571300-01
Chr04	irgsp1_rep	five_prime_UTR	28751117	28751547	.	+	.	Parent=Os04t0571300-01
Chr04	irgsp1_rep	CDS	28751548	28751916	.	+	0	Parent=Os04t0571300-01
Chr04	irgsp1_rep	CDS	28752415	28752533	.	+	0	Parent=Os04t0571300-01
Chr04	irgsp1_rep	CDS	28753600	28754026	.	+	1	Parent=Os04t0571300-01
Chr04	irgsp1_rep	three_prime_UTR	28754027	28754394	.	+	.	Parent=Os04t0571300-01
Chr04	irgsp1_rep	mRNA	28751117	28753070	.	+	.	ID=Os04t0571300-02;Name=Os04t0571300-02;Locus_id=Os04g0571300;Oryzabase Gene Symbol Synonym(s)=OsFbox228%2C Os_F0553;Oryzabase Gene Name Synonym(s)=F-box protein 228;Note=Similar to OSIGBa0127A14.1 protein.;Transcript_evidence=AK119923 (DDBJ%2C Best hit);ORF_evidence=Q01JM6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-183-G10;Oryzabase=17015;Expression=AK119923;TENOR=Os04t0571300-02;KEGG=Os04t0571300-02
Chr04	irgsp1_rep	five_prime_UTR	28751117	28751547	.	+	.	Parent=Os04t0571300-02
Chr04	irgsp1_rep	CDS	28751548	28751916	.	+	0	Parent=Os04t0571300-02
Chr04	irgsp1_rep	CDS	28752415	28752654	.	+	0	Parent=Os04t0571300-02
Chr04	irgsp1_rep	three_prime_UTR	28752655	28753070	.	+	.	Parent=Os04t0571300-02
Chr04	irgsp1_rep	mRNA	28751148	28754395	.	+	.	ID=Os04t0571300-03;Name=Os04t0571300-03;Locus_id=Os04g0571300;Oryzabase Gene Symbol Synonym(s)=OsFbox228%2C Os_F0553;Oryzabase Gene Name Synonym(s)=F-box protein 228;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK099216 (DDBJ%2C Best hit);ORF_evidence=Q01JM6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013081J09;Oryzabase=17015;Expression=AK099216;TENOR=Os04t0571300-03;KEGG=Os04t0571300-03
Chr04	irgsp1_rep	five_prime_UTR	28751148	28751547	.	+	.	Parent=Os04t0571300-03
Chr04	irgsp1_rep	CDS	28751548	28751916	.	+	0	Parent=Os04t0571300-03
Chr04	irgsp1_rep	CDS	28752415	28752533	.	+	0	Parent=Os04t0571300-03
Chr04	irgsp1_rep	CDS	28753600	28754026	.	+	1	Parent=Os04t0571300-03
Chr04	irgsp1_rep	three_prime_UTR	28754027	28754395	.	+	.	Parent=Os04t0571300-03
Chr04	irgsp1_rep	mRNA	28772407	28774391	.	-	.	ID=Os04t0571450-00;Name=Os04t0571450-00;Locus_id=Os04g0571450;Note=Hypothetical protein.;Transcript_evidence=AK362314 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0571450-00
Chr04	irgsp1_rep	five_prime_UTR	28774068	28774391	.	-	.	Parent=Os04t0571450-00
Chr04	irgsp1_rep	CDS	28773525	28774067	.	-	0	Parent=Os04t0571450-00
Chr04	irgsp1_rep	three_prime_UTR	28772407	28773524	.	-	.	Parent=Os04t0571450-00
Chr04	irgsp1_rep	mRNA	28772448	28774623	.	+	.	ID=Os04t0571600-01;Name=Os04t0571600-01;Locus_id=Os04g0571600;Note=Multi antimicrobial extrusion protein MatE family protein.;Transcript_evidence=AK241934 (DDBJ%2C Best hit);ORF_evidence=Q01JM2 (UniProt);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);NIAS_FLcDNA=J075082P08;TENOR=Os04t0571600-01;KEGG=Os04t0571600-01
Chr04	irgsp1_rep	five_prime_UTR	28772448	28772685	.	+	.	Parent=Os04t0571600-01
Chr04	irgsp1_rep	CDS	28772686	28774368	.	+	0	Parent=Os04t0571600-01
Chr04	irgsp1_rep	three_prime_UTR	28774369	28774623	.	+	.	Parent=Os04t0571600-01
Chr04	irgsp1_rep	mRNA	28774947	28776387	.	+	.	ID=Os04t0571700-01;Name=Os04t0571700-01;Locus_id=Os04g0571700;Note=Non-protein coding transcript.;Transcript_evidence=AK109680 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-145-C11;TENOR=Os04t0571700-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	exon	28774947	28776387	.	+	.	Parent=Os04t0571700-01
Chr04	irgsp1_rep	mRNA	28788533	28791208	.	+	.	ID=Os04t0571800-01;Name=Os04t0571800-01;Locus_id=Os04g0571800;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK099520 (DDBJ%2C Best hit);ORF_evidence=Q01JM1 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J013030E23;Expression=AK099520;TENOR=Os04t0571800-01;KEGG=Os04t0571800-01
Chr04	irgsp1_rep	five_prime_UTR	28788533	28788882	.	+	.	Parent=Os04t0571800-01
Chr04	irgsp1_rep	CDS	28788883	28789068	.	+	0	Parent=Os04t0571800-01
Chr04	irgsp1_rep	CDS	28789952	28790049	.	+	0	Parent=Os04t0571800-01
Chr04	irgsp1_rep	CDS	28790584	28790908	.	+	1	Parent=Os04t0571800-01
Chr04	irgsp1_rep	three_prime_UTR	28790909	28791208	.	+	.	Parent=Os04t0571800-01
Chr04	irgsp1_rep	mRNA	28788578	28791105	.	+	.	ID=Os04t0571800-02;Name=Os04t0571800-02;Locus_id=Os04g0571800;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK061021 (DDBJ%2C Best hit);ORF_evidence=Q01JM1 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=006-204-C11;Expression=AK061021;TENOR=Os04t0571800-02;KEGG=Os04t0571800-02
Chr04	irgsp1_rep	five_prime_UTR	28788578	28788882	.	+	.	Parent=Os04t0571800-02
Chr04	irgsp1_rep	CDS	28788883	28789068	.	+	0	Parent=Os04t0571800-02
Chr04	irgsp1_rep	CDS	28789952	28790049	.	+	0	Parent=Os04t0571800-02
Chr04	irgsp1_rep	CDS	28790584	28790908	.	+	1	Parent=Os04t0571800-02
Chr04	irgsp1_rep	three_prime_UTR	28790909	28791105	.	+	.	Parent=Os04t0571800-02
Chr04	irgsp1_rep	mRNA	28809427	28812531	.	+	.	ID=Os04t0572100-01;Name=Os04t0572100-01;Locus_id=Os04g0572100;Note=Hypothetical gene.;Transcript_evidence=AK111470 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-183-E10;TENOR=Os04t0572100-01
Chr04	irgsp1_rep	five_prime_UTR	28809427	28809535	.	+	.	Parent=Os04t0572100-01
Chr04	irgsp1_rep	CDS	28809536	28809738	.	+	0	Parent=Os04t0572100-01
Chr04	irgsp1_rep	CDS	28810965	28810986	.	+	1	Parent=Os04t0572100-01
Chr04	irgsp1_rep	three_prime_UTR	28810987	28812531	.	+	.	Parent=Os04t0572100-01
Chr04	irgsp1_rep	mRNA	28813791	28814782	.	+	.	ID=Os04t0572200-00;Name=Os04t0572200-00;Locus_id=Os04g0572200;CGSNL Gene Symbol=ERF23;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 23;Oryzabase Gene Symbol Synonym(s)=OsERF#023%2C OsERF023%2C OsERF23%2C AP2/EREBP#144%2C AP2/EREBP144;Oryzabase Gene Name Synonym(s)=ethylene response factor 23%2C APETALA2/ethylene-responsive element binding protein 144;Note=Similar to OSIGBa0127A14.7 protein.;Transcript_evidence=EU955751 (DDBJ);ORF_evidence=Q01JM0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);Oryzabase=10547;TENOR=Os04t0572200-00;KEGG=Os04t0572200-00
Chr04	irgsp1_rep	five_prime_UTR	28813791	28813897	.	+	.	Parent=Os04t0572200-00
Chr04	irgsp1_rep	CDS	28813898	28814518	.	+	0	Parent=Os04t0572200-00
Chr04	irgsp1_rep	three_prime_UTR	28814519	28814782	.	+	.	Parent=Os04t0572200-00
Chr04	irgsp1_rep	mRNA	28820861	28821520	.	+	.	ID=Os04t0572400-00;Name=Os04t0572400-00;Locus_id=Os04g0572400;CGSNL Gene Symbol=DREB1E;CGSNL Gene Name=DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1E;Oryzabase Gene Symbol Synonym(s)=OsDREB1E%2C OsERF030%2C OsERF#030%2C OsERF30%2C ERF30%2C AP2/EREBP#160%2C AP2/EREBP160%2C OsDREB1-1;Oryzabase Gene Name Synonym(s)=DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1E%2C ethylene response factor 30%2C APETALA2/ethylene-responsive element binding protein 160;Note=Similar to CRT/DRE binding factor 1.;Transcript_evidence=AY114110 (DDBJ%2C Best hit);ORF_evidence=Q8H273 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);Oryzabase=9275;Expression=AY114110;TENOR=Os04t0572400-00;KEGG=Os04t0572400-00
Chr04	irgsp1_rep	CDS	28820861	28821520	.	+	0	Parent=Os04t0572400-00
Chr04	irgsp1_rep	mRNA	28827172	28829781	.	+	.	ID=Os04t0572500-00;Name=Os04t0572500-00;Locus_id=Os04g0572500;Note=Similar to OSIGBa0147H17.2 protein.;Transcript_evidence=AK249395 (DDBJ);ORF_evidence=Q01JX1 (UniProt);TENOR=Os04t0572500-00;KEGG=Os04t0572500-00
Chr04	irgsp1_rep	CDS	28827172	28827888	.	+	0	Parent=Os04t0572500-00
Chr04	irgsp1_rep	CDS	28828026	28828248	.	+	0	Parent=Os04t0572500-00
Chr04	irgsp1_rep	CDS	28829288	28829781	.	+	2	Parent=Os04t0572500-00
Chr04	irgsp1_rep	mRNA	28841171	28846886	.	+	.	ID=Os04t0572600-01;Name=Os04t0572600-01;Locus_id=Os04g0572600;CGSNL Gene Symbol=NRPD1A;Oryzabase Gene Symbol Synonym(s)=OsNRPD1a;Note=Similar to DNA-directed RNA polymerase.;Transcript_evidence=AK064589 (DDBJ%2C Best hit);ORF_evidence=Q01JX0 (UniProt);GO=Biological Process: amine metabolic process (GO:0009308),Molecular Function: copper ion binding (GO:0005507),Molecular Function: quinone binding (GO:0048038);InterPro=Copper amine oxidase%2C N2/N3-terminal (IPR015801),Protein of unknown function DUF3223 (IPR021602);NIAS_FLcDNA=002-112-G03;Oryzabase=23730;TENOR=Os04t0572600-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	28841171	28841172	.	+	.	Parent=Os04t0572600-01
Chr04	irgsp1_rep	CDS	28841173	28841291	.	+	0	Parent=Os04t0572600-01
Chr04	irgsp1_rep	CDS	28843394	28843536	.	+	1	Parent=Os04t0572600-01
Chr04	irgsp1_rep	CDS	28844126	28844352	.	+	2	Parent=Os04t0572600-01
Chr04	irgsp1_rep	CDS	28844488	28844661	.	+	0	Parent=Os04t0572600-01
Chr04	irgsp1_rep	CDS	28844756	28844893	.	+	0	Parent=Os04t0572600-01
Chr04	irgsp1_rep	CDS	28845361	28845620	.	+	0	Parent=Os04t0572600-01
Chr04	irgsp1_rep	CDS	28845727	28845838	.	+	1	Parent=Os04t0572600-01
Chr04	irgsp1_rep	CDS	28846321	28846503	.	+	0	Parent=Os04t0572600-01
Chr04	irgsp1_rep	three_prime_UTR	28846504	28846886	.	+	.	Parent=Os04t0572600-01
Chr04	irgsp1_rep	mRNA	28833236	28846864	.	+	.	ID=Os04t0572600-02;Name=Os04t0572600-02;Locus_id=Os04g0572600;RAP-DB Gene Symbol Synonym(s)=OsNRPD1a%2C OsNRPD1;CGSNL Gene Symbol=NRPD1A;Oryzabase Gene Symbol Synonym(s)=OsNRPD1a;Note=Largest subunit of RNA polymerase IV (Pol IV);Transcript_evidence=XM_015781553;ORF_evidence=XP_015637039;GO=Biological Process: transcription%2C DNA-templated (GO:0006351),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed 5'-3' RNA polymerase activity (GO:0003899);InterPro=RNA polymerase Rpb1%2C domain 3 superfamily (IPR042102),RNA polymerase Rpb1%2C funnel domain superfamily (IPR038120),DNA-directed RNA polymerase IV/V subunit 1%2C N-terminal (IPR040403),RNA polymerase Rpb1%2C domain 1 (IPR007080),RNA polymerase%2C N-terminal (IPR006592),RNA polymerase%2C alpha subunit (IPR000722),RNA polymerase Rpb1%2C domain 3 (IPR007066),RNA polymerase Rpb1%2C domain 4 (IPR007083),DNA-directed RNA polymerase IV/V subunit 1%2C C-terminal (IPR040402);Manual Curation=June 17%2C 2020;Literature_PMID=32075556;Oryzabase=23730
Chr04	irgsp1_rep	five_prime_UTR	28833236	28833454	.	+	.	Parent=Os04t0572600-02
Chr04	irgsp1_rep	five_prime_UTR	28833951	28834037	.	+	.	Parent=Os04t0572600-02
Chr04	irgsp1_rep	five_prime_UTR	28834207	28834207	.	+	.	Parent=Os04t0572600-02
Chr04	irgsp1_rep	CDS	28834208	28834291	.	+	0	Parent=Os04t0572600-02
Chr04	irgsp1_rep	CDS	28834371	28834491	.	+	0	Parent=Os04t0572600-02
Chr04	irgsp1_rep	CDS	28834577	28834701	.	+	2	Parent=Os04t0572600-02
Chr04	irgsp1_rep	CDS	28835230	28835274	.	+	0	Parent=Os04t0572600-02
Chr04	irgsp1_rep	CDS	28835345	28835608	.	+	0	Parent=Os04t0572600-02
Chr04	irgsp1_rep	CDS	28836576	28836731	.	+	0	Parent=Os04t0572600-02
Chr04	irgsp1_rep	CDS	28837128	28837265	.	+	0	Parent=Os04t0572600-02
Chr04	irgsp1_rep	CDS	28838781	28840658	.	+	0	Parent=Os04t0572600-02
Chr04	irgsp1_rep	CDS	28840757	28840926	.	+	0	Parent=Os04t0572600-02
Chr04	irgsp1_rep	CDS	28841016	28841082	.	+	1	Parent=Os04t0572600-02
Chr04	irgsp1_rep	CDS	28841173	28841291	.	+	0	Parent=Os04t0572600-02
Chr04	irgsp1_rep	CDS	28843394	28843536	.	+	1	Parent=Os04t0572600-02
Chr04	irgsp1_rep	CDS	28844126	28844352	.	+	2	Parent=Os04t0572600-02
Chr04	irgsp1_rep	CDS	28844488	28844661	.	+	0	Parent=Os04t0572600-02
Chr04	irgsp1_rep	CDS	28844756	28844893	.	+	0	Parent=Os04t0572600-02
Chr04	irgsp1_rep	CDS	28845361	28845620	.	+	0	Parent=Os04t0572600-02
Chr04	irgsp1_rep	CDS	28845727	28845838	.	+	1	Parent=Os04t0572600-02
Chr04	irgsp1_rep	CDS	28846321	28846503	.	+	0	Parent=Os04t0572600-02
Chr04	irgsp1_rep	three_prime_UTR	28846504	28846864	.	+	.	Parent=Os04t0572600-02
Chr04	irgsp1_rep	mRNA	28849207	28852782	.	+	.	ID=Os04t0572700-01;Name=Os04t0572700-01;Locus_id=Os04g0572700;Oryzabase Gene Symbol Synonym(s)=OsWD40-107;Note=Similar to DNA-directed RNA polymerase.;Transcript_evidence=AK103254 (DDBJ%2C Best hit);ORF_evidence=B9FC30 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=J033123O13;Oryzabase=10788;TENOR=Os04t0572700-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	28849207	28849276	.	+	.	Parent=Os04t0572700-01
Chr04	irgsp1_rep	CDS	28849277	28849657	.	+	0	Parent=Os04t0572700-01
Chr04	irgsp1_rep	CDS	28849771	28849838	.	+	0	Parent=Os04t0572700-01
Chr04	irgsp1_rep	CDS	28849944	28849989	.	+	1	Parent=Os04t0572700-01
Chr04	irgsp1_rep	CDS	28850060	28850162	.	+	0	Parent=Os04t0572700-01
Chr04	irgsp1_rep	CDS	28850247	28850296	.	+	2	Parent=Os04t0572700-01
Chr04	irgsp1_rep	three_prime_UTR	28850297	28850693	.	+	.	Parent=Os04t0572700-01
Chr04	irgsp1_rep	three_prime_UTR	28850792	28850859	.	+	.	Parent=Os04t0572700-01
Chr04	irgsp1_rep	three_prime_UTR	28851613	28851710	.	+	.	Parent=Os04t0572700-01
Chr04	irgsp1_rep	three_prime_UTR	28851802	28852126	.	+	.	Parent=Os04t0572700-01
Chr04	irgsp1_rep	three_prime_UTR	28852333	28852419	.	+	.	Parent=Os04t0572700-01
Chr04	irgsp1_rep	three_prime_UTR	28852532	28852782	.	+	.	Parent=Os04t0572700-01
Chr04	irgsp1_rep	mRNA	28854121	28854690	.	+	.	ID=Os04t0572800-00;Name=Os04t0572800-00;Locus_id=Os04g0572800;Note=Similar to OSIGBa0147H17.4 protein.;Transcript_evidence=CT837885 (DDBJ%2C Best hit);ORF_evidence=Q01JW9 (UniProt);TENOR=Os04t0572800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	28854121	28854170	.	+	.	Parent=Os04t0572800-00
Chr04	irgsp1_rep	CDS	28854171	28854530	.	+	0	Parent=Os04t0572800-00
Chr04	irgsp1_rep	three_prime_UTR	28854531	28854690	.	+	.	Parent=Os04t0572800-00
Chr04	irgsp1_rep	mRNA	28862600	28868988	.	+	.	ID=Os04t0573000-01;Name=Os04t0573000-01;Locus_id=Os04g0573000;RAP-DB Gene Symbol Synonym(s)=OsSPX-MFS1;RAP-DB Gene Name Synonym(s)=SPX-MFS protein 1;Oryzabase Gene Symbol Synonym(s)=OsSPX-MFS1%2C SPX-MFS1;Oryzabase Gene Name Synonym(s)=SPX-MFS protein 1;Note=SPX-MFS protein%2C Phosphate transporter%2C Pi homeostasis;Transcript_evidence=AK066068;ORF_evidence=Q0JAW2;GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral component of membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),SPX domain (IPR004331),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J013056J05;Manual Curation=December 7%2C 2015;Literature_PMID=26424157,22803610,21062869;Oryzabase=11847;Expression=AK066068;TENOR=Os04t0573000-01;KEGG=Os04t0573000-01
Chr04	irgsp1_rep	five_prime_UTR	28862600	28863045	.	+	.	Parent=Os04t0573000-01
Chr04	irgsp1_rep	five_prime_UTR	28864919	28864939	.	+	.	Parent=Os04t0573000-01
Chr04	irgsp1_rep	CDS	28864940	28864992	.	+	0	Parent=Os04t0573000-01
Chr04	irgsp1_rep	CDS	28865279	28865399	.	+	1	Parent=Os04t0573000-01
Chr04	irgsp1_rep	CDS	28865560	28865871	.	+	0	Parent=Os04t0573000-01
Chr04	irgsp1_rep	CDS	28865969	28866073	.	+	0	Parent=Os04t0573000-01
Chr04	irgsp1_rep	CDS	28866175	28866629	.	+	0	Parent=Os04t0573000-01
Chr04	irgsp1_rep	CDS	28866844	28867145	.	+	1	Parent=Os04t0573000-01
Chr04	irgsp1_rep	CDS	28867317	28867495	.	+	2	Parent=Os04t0573000-01
Chr04	irgsp1_rep	CDS	28867984	28868174	.	+	0	Parent=Os04t0573000-01
Chr04	irgsp1_rep	CDS	28868323	28868456	.	+	1	Parent=Os04t0573000-01
Chr04	irgsp1_rep	CDS	28868603	28868841	.	+	2	Parent=Os04t0573000-01
Chr04	irgsp1_rep	three_prime_UTR	28868842	28868988	.	+	.	Parent=Os04t0573000-01
Chr04	irgsp1_rep	mRNA	28870310	28872726	.	+	.	ID=Os04t0573100-01;Name=Os04t0573100-01;Locus_id=Os04g0573100;RAP-DB Gene Symbol Synonym(s)=HTH1;RAP-DB Gene Name Synonym(s)=HOTHEAD1;CGSNL Gene Symbol=HTH1;CGSNL Gene Name=HOTHEAD 1;Oryzabase Gene Symbol Synonym(s)=OsHTH1;Oryzabase Gene Name Synonym(s)=HOTHEAD1;Note=Putative glucose-methanol-choline (GMC) oxidoreductase%2C Cutin biosynthesis%2C Anther development%2C Pollen fertility;Transcript_evidence=AK106787;ORF_evidence=Q7XTZ0;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Glucose-methanol-choline oxidoreductase (IPR012132),FAD/NAD(P)-binding domain (IPR023753),Glucose-methanol-choline oxidoreductase%2C N-terminal (IPR000172),Glucose-methanol-choline oxidoreductase%2C C-terminal (IPR007867);NIAS_FLcDNA=002-116-A02;Manual Curation=July 28%2C 2017;Literature_PMID=28838125;Oryzabase=22384;Expression=AK106787;TENOR=Os04t0573100-01;KEGG=Os04t0573100-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	28870310	28870381	.	+	.	Parent=Os04t0573100-01
Chr04	irgsp1_rep	CDS	28870382	28871114	.	+	0	Parent=Os04t0573100-01
Chr04	irgsp1_rep	CDS	28871213	28871622	.	+	2	Parent=Os04t0573100-01
Chr04	irgsp1_rep	CDS	28871722	28872287	.	+	0	Parent=Os04t0573100-01
Chr04	irgsp1_rep	CDS	28872464	28872530	.	+	1	Parent=Os04t0573100-01
Chr04	irgsp1_rep	three_prime_UTR	28872531	28872726	.	+	.	Parent=Os04t0573100-01
Chr04	irgsp1_rep	mRNA	28874420	28878849	.	+	.	ID=Os04t0573200-01;Name=Os04t0573200-01;Locus_id=Os04g0573200;RAP-DB Gene Symbol Synonym(s)=CCSD;RAP-DB Gene Name Synonym(s)=Copper Chaperone for Superoxide Dismutase;Oryzabase Gene Symbol Synonym(s)=SOD%2C OsSOD-Cu/Zn%2C SOD-Cu/Zn;Oryzabase Gene Name Synonym(s)=superoxide dismutase;Note=Copper chaperone for superoxide dismutase%2C Target of miR398b%2C Resistance to rice blast disease;Transcript_evidence=AK120348;ORF_evidence=Q7XTY9;GO=Biological Process: superoxide metabolic process (GO:0006801),Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain superfamily (IPR036163),Superoxide dismutase-like%2C copper/zinc binding domain superfamily (IPR036423),Heavy metal-associated domain%2C HMA (IPR006121),Superoxide dismutase%2C copper/zinc binding domain (IPR001424);NIAS_FLcDNA=J013064M11;Manual Curation=February 15%2C 2019;Literature_PMID=30632163;Oryzabase=20934;Expression=AK120348;TENOR=Os04t0573200-01;KEGG=Os04t0573200-01
Chr04	irgsp1_rep	five_prime_UTR	28874420	28874487	.	+	.	Parent=Os04t0573200-01
Chr04	irgsp1_rep	CDS	28874488	28874736	.	+	0	Parent=Os04t0573200-01
Chr04	irgsp1_rep	CDS	28874835	28874858	.	+	0	Parent=Os04t0573200-01
Chr04	irgsp1_rep	CDS	28876115	28876187	.	+	0	Parent=Os04t0573200-01
Chr04	irgsp1_rep	CDS	28876277	28876411	.	+	2	Parent=Os04t0573200-01
Chr04	irgsp1_rep	CDS	28876918	28877138	.	+	2	Parent=Os04t0573200-01
Chr04	irgsp1_rep	CDS	28878474	28878710	.	+	0	Parent=Os04t0573200-01
Chr04	irgsp1_rep	three_prime_UTR	28878711	28878849	.	+	.	Parent=Os04t0573200-01
Chr04	irgsp1_rep	mRNA	28874500	28878849	.	+	.	ID=Os04t0573200-02;Name=Os04t0573200-02;Locus_id=Os04g0573200;Oryzabase Gene Symbol Synonym(s)=SOD%2C OsSOD-Cu/Zn%2C SOD-Cu/Zn;Oryzabase Gene Name Synonym(s)=superoxide dismutase;Note=Similar to OSIGBa0147H17.7 protein.;Transcript_evidence=AK065277 (DDBJ%2C Best hit);ORF_evidence=Q01JW6 (UniProt);GO=Biological Process: superoxide metabolic process (GO:0006801),Biological Process: metal ion transport (GO:0030001),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: superoxide dismutase activity (GO:0004784),Molecular Function: metal ion binding (GO:0046872);InterPro=Superoxide dismutase%2C copper/zinc binding domain (IPR001424),Heavy metal-associated domain%2C HMA (IPR006121),Superoxide dismutase (Cu/Zn) / chaperones (IPR024134),Superoxide dismutase copper chaperone (IPR024142);NIAS_FLcDNA=J013002L14;Oryzabase=20934;Expression=AK065277;TENOR=Os04t0573200-02;KEGG=Os04t0573200-02
Chr04	irgsp1_rep	CDS	28874500	28874736	.	+	0	Parent=Os04t0573200-02
Chr04	irgsp1_rep	CDS	28874835	28874858	.	+	0	Parent=Os04t0573200-02
Chr04	irgsp1_rep	CDS	28876115	28876187	.	+	0	Parent=Os04t0573200-02
Chr04	irgsp1_rep	CDS	28876277	28876411	.	+	2	Parent=Os04t0573200-02
Chr04	irgsp1_rep	CDS	28876918	28877138	.	+	2	Parent=Os04t0573200-02
Chr04	irgsp1_rep	CDS	28878474	28878710	.	+	0	Parent=Os04t0573200-02
Chr04	irgsp1_rep	three_prime_UTR	28878711	28878849	.	+	.	Parent=Os04t0573200-02
Chr04	irgsp1_rep	mRNA	28876155	28881577	.	+	.	ID=Os04t0573200-03;Name=Os04t0573200-03;Locus_id=Os04g0573200;Oryzabase Gene Symbol Synonym(s)=SOD%2C OsSOD-Cu/Zn%2C SOD-Cu/Zn;Oryzabase Gene Name Synonym(s)=superoxide dismutase;Note=Superoxide dismutase%2C copper/zinc binding domain containing protein.;Transcript_evidence=AK110251 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: superoxide metabolic process (GO:0006801),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: superoxide dismutase activity (GO:0004784),Molecular Function: metal ion binding (GO:0046872);InterPro=Superoxide dismutase%2C copper/zinc binding domain (IPR001424),Superoxide dismutase (Cu/Zn) / chaperones (IPR024134),Superoxide dismutase copper chaperone (IPR024142);NIAS_FLcDNA=002-162-H04;Oryzabase=20934;Expression=AK110251;TENOR=Os04t0573200-03;KEGG=Os04t0573200-03
Chr04	irgsp1_rep	five_prime_UTR	28876155	28876156	.	+	.	Parent=Os04t0573200-03
Chr04	irgsp1_rep	CDS	28876157	28876187	.	+	0	Parent=Os04t0573200-03
Chr04	irgsp1_rep	CDS	28876277	28876411	.	+	2	Parent=Os04t0573200-03
Chr04	irgsp1_rep	CDS	28876918	28877138	.	+	2	Parent=Os04t0573200-03
Chr04	irgsp1_rep	CDS	28878474	28878710	.	+	0	Parent=Os04t0573200-03
Chr04	irgsp1_rep	three_prime_UTR	28878711	28881577	.	+	.	Parent=Os04t0573200-03
Chr04	irgsp1_rep	mRNA	28878774	28881476	.	+	.	ID=Os04t0573200-04;Name=Os04t0573200-04;Locus_id=Os04g0573200;Oryzabase Gene Symbol Synonym(s)=SOD%2C OsSOD-Cu/Zn%2C SOD-Cu/Zn;Oryzabase Gene Name Synonym(s)=superoxide dismutase;Note=Hypothetical gene.;Transcript_evidence=AK240666 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033060M02;Oryzabase=20934;TENOR=Os04t0573200-04;KEGG=Os04t0573200-04
Chr04	irgsp1_rep	five_prime_UTR	28878774	28879450	.	+	.	Parent=Os04t0573200-04
Chr04	irgsp1_rep	CDS	28879451	28879885	.	+	0	Parent=Os04t0573200-04
Chr04	irgsp1_rep	three_prime_UTR	28879886	28881476	.	+	.	Parent=Os04t0573200-04
Chr04	irgsp1_rep	mRNA	28878828	28882313	.	+	.	ID=Os04t0573200-05;Name=Os04t0573200-05;Locus_id=Os04g0573200;Oryzabase Gene Symbol Synonym(s)=SOD%2C OsSOD-Cu/Zn%2C SOD-Cu/Zn;Oryzabase Gene Name Synonym(s)=superoxide dismutase;Note=Hypothetical gene.;Transcript_evidence=AK110034 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-160-B01;Oryzabase=20934;Expression=AK110034;TENOR=Os04t0573200-05;KEGG=Os04t0573200-05
Chr04	irgsp1_rep	five_prime_UTR	28878828	28879450	.	+	.	Parent=Os04t0573200-05
Chr04	irgsp1_rep	CDS	28879451	28879885	.	+	0	Parent=Os04t0573200-05
Chr04	irgsp1_rep	three_prime_UTR	28879886	28882313	.	+	.	Parent=Os04t0573200-05
Chr04	irgsp1_rep	mRNA	28874207	28881309	.	-	.	ID=Os04t0573300-00;Name=Os04t0573300-00;Locus_id=Os04g0573300;Oryzabase Gene Symbol Synonym(s)=OsSub45%2C SUB45;Oryzabase Gene Name Synonym(s)=Subtilisin 45%2C SUBTILISIN 45;Note=Similar to OSIGBa0147H17.8 protein.;Transcript_evidence=AK357644 (DDBJ);ORF_evidence=Q01JW5 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Proteinase inhibitor%2C propeptide (IPR009020),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);Oryzabase=20130;TENOR=Os04t0573300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	28879222	28881309	.	-	0	Parent=Os04t0573300-00
Chr04	irgsp1_rep	CDS	28874207	28874776	.	-	0	Parent=Os04t0573300-00
Chr04	irgsp1_rep	mRNA	28890162	28890380	.	+	.	ID=Os04t0573700-00;Name=Os04t0573700-00;Locus_id=Os04g0573700;Note=Non-protein coding transcript.;Transcript_evidence=BT083761 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0573700-00
Chr04	irgsp1_rep	exon	28890162	28890380	.	+	.	Parent=Os04t0573700-00
Chr04	irgsp1_rep	mRNA	28892561	28894832	.	+	.	ID=Os04t0573900-01;Name=Os04t0573900-01;Locus_id=Os04g0573900;RAP-DB Gene Symbol Synonym(s)=CYP704A3;RAP-DB Gene Name Synonym(s)=CytoChrome P450 704A3;CGSNL Gene Symbol=CYP704A3;CGSNL Gene Name=P-450 704A3;Oryzabase Gene Symbol Synonym(s)=OsCYP704A3;Oryzabase Gene Name Synonym(s)=CytoChrome P450 704A3;Note=Putative cytoChrome P450%2C CYP704A3%2C Target gene of miRNA (osa-miRf10422-akr)%2C Control of seed length;Transcript_evidence=AK101618;ORF_evidence=A0A0N7KJJ5;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 superfamily (IPR036396),CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);NIAS_FLcDNA=J033052H03;Manual Curation=January 15%2C 2019;Literature_PMID=27095382;Oryzabase=21001;TENOR=Os04t0573900-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=endoplasmic reticulum (GO:0005783)
Chr04	irgsp1_rep	five_prime_UTR	28892561	28892682	.	+	.	Parent=Os04t0573900-01
Chr04	irgsp1_rep	CDS	28892683	28893483	.	+	0	Parent=Os04t0573900-01
Chr04	irgsp1_rep	CDS	28893604	28893939	.	+	0	Parent=Os04t0573900-01
Chr04	irgsp1_rep	CDS	28894074	28894277	.	+	0	Parent=Os04t0573900-01
Chr04	irgsp1_rep	CDS	28894393	28894572	.	+	0	Parent=Os04t0573900-01
Chr04	irgsp1_rep	three_prime_UTR	28894573	28894832	.	+	.	Parent=Os04t0573900-01
Chr04	irgsp1_rep	mRNA	28892660	28894804	.	+	.	ID=Os04t0573900-02;Name=Os04t0573900-02;Locus_id=Os04g0573900;CGSNL Gene Symbol=CYP704A3;CGSNL Gene Name=P-450 704A3;Oryzabase Gene Symbol Synonym(s)=OsCYP704A3;Oryzabase Gene Name Synonym(s)=CytoChrome P450 704A3;Note=Similar to cDNA clone:001-036-C03%2C full insert sequence.;Transcript_evidence=AK103182 (DDBJ%2C Best hit),AK119612 (DDBJ%2C Best hit),AK120901 (DDBJ%2C Best hit);ORF_evidence=B7E6Q0 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);NIAS_FLcDNA=J033121J02,002-117-G01,J023030M24;Oryzabase=21001;TENOR=Os04t0573900-02;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	28892660	28892682	.	+	.	Parent=Os04t0573900-02
Chr04	irgsp1_rep	CDS	28892683	28893483	.	+	0	Parent=Os04t0573900-02
Chr04	irgsp1_rep	CDS	28893604	28893939	.	+	0	Parent=Os04t0573900-02
Chr04	irgsp1_rep	CDS	28894074	28894277	.	+	0	Parent=Os04t0573900-02
Chr04	irgsp1_rep	CDS	28894393	28894572	.	+	0	Parent=Os04t0573900-02
Chr04	irgsp1_rep	three_prime_UTR	28894573	28894804	.	+	.	Parent=Os04t0573900-02
Chr04	irgsp1_rep	mRNA	28892660	28894774	.	+	.	ID=Os04t0573900-03;Name=Os04t0573900-03;Locus_id=Os04g0573900;CGSNL Gene Symbol=CYP704A3;CGSNL Gene Name=P-450 704A3;Oryzabase Gene Symbol Synonym(s)=OsCYP704A3;Oryzabase Gene Name Synonym(s)=CytoChrome P450 704A3;Note=Similar to cytoChrome P450.;Transcript_evidence=AK061650 (DDBJ%2C Best hit);ORF_evidence=XP_002320074.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);NIAS_FLcDNA=001-036-C03;Oryzabase=21001;TENOR=Os04t0573900-03;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	28892660	28892682	.	+	.	Parent=Os04t0573900-03
Chr04	irgsp1_rep	CDS	28892683	28893483	.	+	0	Parent=Os04t0573900-03
Chr04	irgsp1_rep	CDS	28893604	28894011	.	+	0	Parent=Os04t0573900-03
Chr04	irgsp1_rep	three_prime_UTR	28894012	28894277	.	+	.	Parent=Os04t0573900-03
Chr04	irgsp1_rep	three_prime_UTR	28894393	28894774	.	+	.	Parent=Os04t0573900-03
Chr04	irgsp1_rep	mRNA	28900687	28902752	.	+	.	ID=Os04t0574100-01;Name=Os04t0574100-01;Locus_id=Os04g0574100;Note=Exostosin-like family protein.;Transcript_evidence=AK069178 (DDBJ%2C Best hit);ORF_evidence=NP_201028.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);NIAS_FLcDNA=J023008D04;Expression=AK069178;TENOR=Os04t0574100-01;KEGG=Os04t0574100-01
Chr04	irgsp1_rep	five_prime_UTR	28900687	28901148	.	+	.	Parent=Os04t0574100-01
Chr04	irgsp1_rep	CDS	28901149	28902573	.	+	0	Parent=Os04t0574100-01
Chr04	irgsp1_rep	three_prime_UTR	28902574	28902752	.	+	.	Parent=Os04t0574100-01
Chr04	irgsp1_rep	mRNA	28900899	28902670	.	+	.	ID=Os04t0574100-02;Name=Os04t0574100-02;Locus_id=Os04g0574100;Note=Exostosin-like family protein.;Transcript_evidence=AK121041 (DDBJ%2C Best hit);ORF_evidence=NP_201028.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);NIAS_FLcDNA=J023052A13;Expression=AK121041;TENOR=Os04t0574100-02;KEGG=Os04t0574100-02
Chr04	irgsp1_rep	five_prime_UTR	28900899	28901148	.	+	.	Parent=Os04t0574100-02
Chr04	irgsp1_rep	CDS	28901149	28902573	.	+	0	Parent=Os04t0574100-02
Chr04	irgsp1_rep	three_prime_UTR	28902574	28902670	.	+	.	Parent=Os04t0574100-02
Chr04	irgsp1_rep	mRNA	28901112	28902745	.	+	.	ID=Os04t0574100-03;Name=Os04t0574100-03;Locus_id=Os04g0574100;Note=Exostosin-like family protein.;Transcript_evidence=AK061150 (DDBJ%2C Best hit);ORF_evidence=NP_201028.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);NIAS_FLcDNA=006-208-E04;Expression=AK061150;TENOR=Os04t0574100-03;KEGG=Os04t0574100-03
Chr04	irgsp1_rep	five_prime_UTR	28901112	28901148	.	+	.	Parent=Os04t0574100-03
Chr04	irgsp1_rep	CDS	28901149	28902573	.	+	0	Parent=Os04t0574100-03
Chr04	irgsp1_rep	three_prime_UTR	28902574	28902745	.	+	.	Parent=Os04t0574100-03
Chr04	irgsp1_rep	mRNA	28910272	28911853	.	-	.	ID=Os04t0574200-01;Name=Os04t0574200-01;Locus_id=Os04g0574200;CGSNL Gene Symbol=FLA1;CGSNL Gene Name=FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsFLA1;Oryzabase Gene Name Synonym(s)=fasciclin-like AGP 1%2C fasciclin-like arabinogalactan protein 1;Note=FAS1 domain domain containing protein.;Transcript_evidence=AK241942 (DDBJ%2C Best hit);ORF_evidence=Q06IA1 (UniProt);InterPro=FAS1 domain (IPR000782);NIAS_FLcDNA=J075088H12;Oryzabase=11336;TENOR=Os04t0574200-01;KEGG=Os04t0574200-01
Chr04	irgsp1_rep	five_prime_UTR	28911808	28911853	.	-	.	Parent=Os04t0574200-01
Chr04	irgsp1_rep	CDS	28910512	28911807	.	-	0	Parent=Os04t0574200-01
Chr04	irgsp1_rep	three_prime_UTR	28910272	28910511	.	-	.	Parent=Os04t0574200-01
Chr04	irgsp1_rep	mRNA	28920181	28920760	.	-	.	ID=Os04t0574350-00;Name=Os04t0574350-00;Locus_id=Os04g0574350;Note=Conserved hypothetical protein.;Transcript_evidence=EU970165 (DDBJ);ORF_evidence=NP_001044125.2 (RefSeq);TENOR=Os04t0574350-00
Chr04	irgsp1_rep	CDS	28920439	28920760	.	-	0	Parent=Os04t0574350-00
Chr04	irgsp1_rep	CDS	28920210	28920352	.	-	2	Parent=Os04t0574350-00
Chr04	irgsp1_rep	three_prime_UTR	28920181	28920209	.	-	.	Parent=Os04t0574350-00
Chr04	irgsp1_rep	mRNA	28921895	28923696	.	+	.	ID=Os04t0574500-01;Name=Os04t0574500-01;Locus_id=Os04g0574500;CGSNL Gene Symbol=GRF12;CGSNL Gene Name=GROWTH-REGULATING FACTOR 12;Oryzabase Gene Symbol Synonym(s)=OsGRF12;Oryzabase Gene Name Synonym(s)=growth-regulating factor12;Note=Similar to Growth-regulating factor 12.;Transcript_evidence=AK110934 (DDBJ%2C Best hit);ORF_evidence=Q6AWX7 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides (GO:0016818);InterPro=WRC (IPR014977),Glutamine-Leucine-Glutamine%2C QLQ (IPR014978);NIAS_FLcDNA=002-173-G02;Oryzabase=10286;TENOR=Os04t0574500-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	28921895	28922224	.	+	.	Parent=Os04t0574500-01
Chr04	irgsp1_rep	CDS	28922225	28922309	.	+	0	Parent=Os04t0574500-01
Chr04	irgsp1_rep	CDS	28922407	28922694	.	+	2	Parent=Os04t0574500-01
Chr04	irgsp1_rep	CDS	28922841	28923178	.	+	2	Parent=Os04t0574500-01
Chr04	irgsp1_rep	three_prime_UTR	28923179	28923696	.	+	.	Parent=Os04t0574500-01
Chr04	irgsp1_rep	mRNA	28924956	28929133	.	+	.	ID=Os04t0574600-01;Name=Os04t0574600-01;Locus_id=Os04g0574600;Note=Ankyrin repeat containing protein.;Transcript_evidence=AK121410 (DDBJ%2C Best hit);ORF_evidence=B8AT61 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Ankyrin repeat (IPR002110),Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J023132O07;Expression=AK121410;TENOR=Os04t0574600-01;KEGG=Os04t0574600-01
Chr04	irgsp1_rep	five_prime_UTR	28924956	28925086	.	+	.	Parent=Os04t0574600-01
Chr04	irgsp1_rep	CDS	28925087	28925359	.	+	0	Parent=Os04t0574600-01
Chr04	irgsp1_rep	CDS	28926377	28926840	.	+	0	Parent=Os04t0574600-01
Chr04	irgsp1_rep	CDS	28927067	28927181	.	+	1	Parent=Os04t0574600-01
Chr04	irgsp1_rep	CDS	28927335	28927982	.	+	0	Parent=Os04t0574600-01
Chr04	irgsp1_rep	CDS	28928107	28928199	.	+	0	Parent=Os04t0574600-01
Chr04	irgsp1_rep	CDS	28928483	28928620	.	+	0	Parent=Os04t0574600-01
Chr04	irgsp1_rep	CDS	28928722	28928991	.	+	0	Parent=Os04t0574600-01
Chr04	irgsp1_rep	three_prime_UTR	28928992	28929133	.	+	.	Parent=Os04t0574600-01
Chr04	irgsp1_rep	mRNA	28929773	28932030	.	+	.	ID=Os04t0574700-01;Name=Os04t0574700-01;Locus_id=Os04g0574700;RAP-DB Gene Symbol Synonym(s)=SLAC1%2C OsSLAC1;RAP-DB Gene Name Synonym(s)=SLOW ANION CHANNEL 1%2C S-type anion channel 1%2C slow anion channel 1;CGSNL Gene Symbol=SLAC1;CGSNL Gene Name=SLOW ANION CHANNEL 1;Oryzabase Gene Symbol Synonym(s)=OsSLAC1;Oryzabase Gene Name Synonym(s)=S-type anion channel 1%2C slow anion channel 1%2C slow-type anion channel 1;Note=Guard cell anion channel protein%2C Nitrate-selective anion channel%2C Control of stomatal closure;Transcript_evidence=AK060520;ORF_evidence=Q7XTX7;GO=Biological Process: cellular ion homeostasis (GO:0006873),Biological Process: transmembrane transport (GO:0055085),Molecular Function: voltage-gated anion channel activity (GO:0008308),Cellular Component: integral component of membrane (GO:0016021);InterPro=Voltage-dependent anion channel (IPR004695),S-type anion channel (IPR030183);NIAS_FLcDNA=001-020-C02;Manual Curation=March 8%2C 2017;Literature_PMID=22915747,26481009;Oryzabase=20402;Expression=AK060520;TENOR=Os04t0574700-01;KEGG=Os04t0574700-01
Chr04	irgsp1_rep	five_prime_UTR	28929773	28929923	.	+	.	Parent=Os04t0574700-01
Chr04	irgsp1_rep	CDS	28929924	28930469	.	+	0	Parent=Os04t0574700-01
Chr04	irgsp1_rep	CDS	28930564	28931369	.	+	0	Parent=Os04t0574700-01
Chr04	irgsp1_rep	CDS	28931445	28931829	.	+	1	Parent=Os04t0574700-01
Chr04	irgsp1_rep	three_prime_UTR	28931830	28932030	.	+	.	Parent=Os04t0574700-01
Chr04	irgsp1_rep	mRNA	28932065	28934270	.	-	.	ID=Os04t0574800-00;Name=Os04t0574800-00;Locus_id=Os04g0574800;Note=Similar to Dihydrodipicolinate synthase.;Transcript_evidence=ab initio prediction;ORF_evidence=Q9LWB9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: lysine biosynthetic process via diaminopimelate (GO:0009089),Molecular Function: catalytic activity (GO:0003824),Molecular Function: dihydrodipicolinate synthase activity (GO:0008840),Molecular Function: lyase activity (GO:0016829);InterPro=Dihydrodipicolinate synthetase-like (IPR002220),Dihydrodipicolinate synthase%2C DapA (IPR005263),Aldolase-type TIM barrel (IPR013785),Dihydrodipicolinate synthetase%2C conserved site (IPR020624),Dihydrodipicolinate synthetase%2C active site (IPR020625);TENOR=Os04t0574800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	28934227	28934270	.	-	0	Parent=Os04t0574800-00
Chr04	irgsp1_rep	CDS	28933582	28933662	.	-	1	Parent=Os04t0574800-00
Chr04	irgsp1_rep	CDS	28932065	28932992	.	-	1	Parent=Os04t0574800-00
Chr04	irgsp1_rep	mRNA	28973239	28974207	.	+	.	ID=Os04t0575801-01;Name=Os04t0575801-01;Locus_id=Os04g0575801;Note=Non-protein coding transcript.;Transcript_evidence=AK288542 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090046E07;TENOR=Os04t0575801-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	exon	28973239	28974207	.	+	.	Parent=Os04t0575801-01
Chr04	irgsp1_rep	mRNA	29032490	29033262	.	-	.	ID=Os04t0576300-01;Name=Os04t0576300-01;Locus_id=Os04g0576300;Oryzabase Gene Symbol Synonym(s)=OsSTA131;Note=tRNA pseudouridine synthase B%2C N-terminal domain containing protein.;Transcript_evidence=AK241726 (DDBJ%2C Best hit);ORF_evidence=NP_191274.1 (RefSeq);GO=Biological Process: pseudouridine synthesis (GO:0001522),Biological Process: RNA processing (GO:0006396),Biological Process: RNA modification (GO:0009451),Molecular Function: RNA binding (GO:0003723),Molecular Function: pseudouridine synthase activity (GO:0009982);InterPro=Pseudouridine synthase II (IPR002501),Pseudouridine synthase-related (IPR004802),Pseudouridine synthase%2C catalytic domain (IPR020103);NIAS_FLcDNA=J065199E10;Oryzabase=19420;TENOR=Os04t0576300-01;KEGG=Os04t0576300-01 (EC:5.4.99.-)
Chr04	irgsp1_rep	CDS	29032663	29033262	.	-	0	Parent=Os04t0576300-01
Chr04	irgsp1_rep	three_prime_UTR	29032490	29032662	.	-	.	Parent=Os04t0576300-01
Chr04	irgsp1_rep	mRNA	29032832	29033430	.	+	.	ID=Os04t0576400-01;Name=Os04t0576400-01;Locus_id=Os04g0576400;Note=Conserved hypothetical protein.;Transcript_evidence=AK109276 (DDBJ%2C Best hit);ORF_evidence=NP_001170229.1 (RefSeq);NIAS_FLcDNA=002-188-A12;TENOR=Os04t0576400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	29032832	29032833	.	+	.	Parent=Os04t0576400-01
Chr04	irgsp1_rep	CDS	29032834	29033163	.	+	0	Parent=Os04t0576400-01
Chr04	irgsp1_rep	three_prime_UTR	29033164	29033430	.	+	.	Parent=Os04t0576400-01
Chr04	irgsp1_rep	mRNA	29042958	29046869	.	+	.	ID=Os04t0576500-01;Name=Os04t0576500-01;Locus_id=Os04g0576500;Note=Peptidase C1A%2C papain C-terminal domain containing protein.;Transcript_evidence=AK066702 (DDBJ%2C Best hit);ORF_evidence=A2XWN4 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase C1A%2C papain C-terminal (IPR000668);NIAS_FLcDNA=J013074O19;Expression=AK066702;TENOR=Os04t0576500-01;KEGG=Os04t0576500-01
Chr04	irgsp1_rep	five_prime_UTR	29042958	29043104	.	+	.	Parent=Os04t0576500-01
Chr04	irgsp1_rep	five_prime_UTR	29043714	29043795	.	+	.	Parent=Os04t0576500-01
Chr04	irgsp1_rep	five_prime_UTR	29044993	29044993	.	+	.	Parent=Os04t0576500-01
Chr04	irgsp1_rep	CDS	29044994	29045105	.	+	0	Parent=Os04t0576500-01
Chr04	irgsp1_rep	CDS	29045839	29046056	.	+	2	Parent=Os04t0576500-01
Chr04	irgsp1_rep	CDS	29046159	29046539	.	+	0	Parent=Os04t0576500-01
Chr04	irgsp1_rep	three_prime_UTR	29046540	29046869	.	+	.	Parent=Os04t0576500-01
Chr04	irgsp1_rep	mRNA	29057940	29063514	.	-	.	ID=Os04t0576600-00;Name=Os04t0576600-00;Locus_id=Os04g0576600;Note=Similar to Zeamatin.;Transcript_evidence=AK376777 (DDBJ);ORF_evidence=E5RDD8 (UniProt);InterPro=Thaumatin%2C pathogenesis-related (IPR001938);TENOR=Os04t0576600-00
Chr04	irgsp1_rep	five_prime_UTR	29062975	29063514	.	-	.	Parent=Os04t0576600-00
Chr04	irgsp1_rep	five_prime_UTR	29060147	29060150	.	-	.	Parent=Os04t0576600-00
Chr04	irgsp1_rep	CDS	29060061	29060146	.	-	0	Parent=Os04t0576600-00
Chr04	irgsp1_rep	CDS	29057951	29058089	.	-	1	Parent=Os04t0576600-00
Chr04	irgsp1_rep	three_prime_UTR	29057940	29057950	.	-	.	Parent=Os04t0576600-00
Chr04	irgsp1_rep	mRNA	29065909	29069212	.	+	.	ID=Os04t0576700-01;Name=Os04t0576700-01;Locus_id=Os04g0576700;Note=RNA polymerase II%2C heptapeptide repeat%2C eukaryotic domain containing protein.;Transcript_evidence=AK102575 (DDBJ%2C Best hit);ORF_evidence=B8AT62 (UniProt);InterPro=Protein of unknown function DUF3615 (IPR022059);NIAS_FLcDNA=J033097O09;Expression=AK102575;TENOR=Os04t0576700-01;KEGG=Os04t0576700-01
Chr04	irgsp1_rep	five_prime_UTR	29065909	29065935	.	+	.	Parent=Os04t0576700-01
Chr04	irgsp1_rep	CDS	29065936	29066192	.	+	0	Parent=Os04t0576700-01
Chr04	irgsp1_rep	CDS	29066273	29066365	.	+	1	Parent=Os04t0576700-01
Chr04	irgsp1_rep	CDS	29066460	29066648	.	+	1	Parent=Os04t0576700-01
Chr04	irgsp1_rep	CDS	29066733	29066870	.	+	1	Parent=Os04t0576700-01
Chr04	irgsp1_rep	CDS	29067612	29067837	.	+	1	Parent=Os04t0576700-01
Chr04	irgsp1_rep	CDS	29068512	29068704	.	+	0	Parent=Os04t0576700-01
Chr04	irgsp1_rep	CDS	29068789	29068949	.	+	2	Parent=Os04t0576700-01
Chr04	irgsp1_rep	three_prime_UTR	29068950	29069212	.	+	.	Parent=Os04t0576700-01
Chr04	irgsp1_rep	mRNA	29071818	29076269	.	+	.	ID=Os04t0576800-01;Name=Os04t0576800-01;Locus_id=Os04g0576800;Note=Similar to predicted protein.;Transcript_evidence=AK099759 (DDBJ%2C Best hit);ORF_evidence=XP_002872763.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Cellular Component: cytoplasm (GO:0005737),Cellular Component: integral to membrane (GO:0016021),Molecular Function: oxidoreductase activity%2C acting on the CH-CH group of donors (GO:0016627);InterPro=3-oxo-5-alpha-steroid 4-dehydrogenase%2C C-terminal (IPR001104);NIAS_FLcDNA=J013093L13;Expression=AK099759;TENOR=Os04t0576800-01;KEGG=Os04t0576800-01 (EC:1.3.99.5)
Chr04	irgsp1_rep	five_prime_UTR	29071818	29072261	.	+	.	Parent=Os04t0576800-01
Chr04	irgsp1_rep	five_prime_UTR	29072583	29073367	.	+	.	Parent=Os04t0576800-01
Chr04	irgsp1_rep	CDS	29073368	29073816	.	+	0	Parent=Os04t0576800-01
Chr04	irgsp1_rep	CDS	29074293	29074527	.	+	1	Parent=Os04t0576800-01
Chr04	irgsp1_rep	CDS	29074958	29075053	.	+	0	Parent=Os04t0576800-01
Chr04	irgsp1_rep	CDS	29075713	29075784	.	+	0	Parent=Os04t0576800-01
Chr04	irgsp1_rep	CDS	29075917	29076021	.	+	0	Parent=Os04t0576800-01
Chr04	irgsp1_rep	three_prime_UTR	29076022	29076269	.	+	.	Parent=Os04t0576800-01
Chr04	irgsp1_rep	mRNA	29071860	29076269	.	+	.	ID=Os04t0576800-02;Name=Os04t0576800-02;Locus_id=Os04g0576800;Note=3-oxo-5-alpha-steroid 4-dehydrogenase%2C C-terminal domain containing protein.;Transcript_evidence=AK073542 (DDBJ%2C Best hit);ORF_evidence=XP_002872763.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Cellular Component: cytoplasm (GO:0005737),Cellular Component: integral to membrane (GO:0016021),Molecular Function: oxidoreductase activity%2C acting on the CH-CH group of donors (GO:0016627);InterPro=3-oxo-5-alpha-steroid 4-dehydrogenase%2C C-terminal (IPR001104);NIAS_FLcDNA=J033042F22;Expression=AK073542;TENOR=Os04t0576800-02;KEGG=Os04t0576800-02 (EC:1.3.99.5)
Chr04	irgsp1_rep	five_prime_UTR	29071860	29072261	.	+	.	Parent=Os04t0576800-02
Chr04	irgsp1_rep	five_prime_UTR	29072583	29072634	.	+	.	Parent=Os04t0576800-02
Chr04	irgsp1_rep	CDS	29072635	29072841	.	+	0	Parent=Os04t0576800-02
Chr04	irgsp1_rep	CDS	29073467	29073816	.	+	0	Parent=Os04t0576800-02
Chr04	irgsp1_rep	CDS	29074293	29074527	.	+	1	Parent=Os04t0576800-02
Chr04	irgsp1_rep	CDS	29074958	29075053	.	+	0	Parent=Os04t0576800-02
Chr04	irgsp1_rep	CDS	29075713	29075784	.	+	0	Parent=Os04t0576800-02
Chr04	irgsp1_rep	CDS	29075917	29076021	.	+	0	Parent=Os04t0576800-02
Chr04	irgsp1_rep	three_prime_UTR	29076022	29076269	.	+	.	Parent=Os04t0576800-02
Chr04	irgsp1_rep	mRNA	29071888	29076269	.	+	.	ID=Os04t0576800-03;Name=Os04t0576800-03;Locus_id=Os04g0576800;Note=3-oxo-5-alpha-steroid 4-dehydrogenase%2C C-terminal domain containing protein.;Transcript_evidence=AK104042 (DDBJ%2C Best hit);ORF_evidence=XP_002872763.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Cellular Component: cytoplasm (GO:0005737),Cellular Component: integral to membrane (GO:0016021),Molecular Function: oxidoreductase activity%2C acting on the CH-CH group of donors (GO:0016627);InterPro=3-oxo-5-alpha-steroid 4-dehydrogenase%2C C-terminal (IPR001104);NIAS_FLcDNA=001-021-H12;Expression=AK104042;TENOR=Os04t0576800-03;KEGG=Os04t0576800-03 (EC:1.3.99.5)
Chr04	irgsp1_rep	five_prime_UTR	29071888	29072261	.	+	.	Parent=Os04t0576800-03
Chr04	irgsp1_rep	five_prime_UTR	29072583	29072634	.	+	.	Parent=Os04t0576800-03
Chr04	irgsp1_rep	CDS	29072635	29072841	.	+	0	Parent=Os04t0576800-03
Chr04	irgsp1_rep	CDS	29073467	29073816	.	+	0	Parent=Os04t0576800-03
Chr04	irgsp1_rep	CDS	29074293	29074527	.	+	1	Parent=Os04t0576800-03
Chr04	irgsp1_rep	CDS	29074958	29075053	.	+	0	Parent=Os04t0576800-03
Chr04	irgsp1_rep	CDS	29075713	29075784	.	+	0	Parent=Os04t0576800-03
Chr04	irgsp1_rep	CDS	29075917	29076021	.	+	0	Parent=Os04t0576800-03
Chr04	irgsp1_rep	three_prime_UTR	29076022	29076269	.	+	.	Parent=Os04t0576800-03
Chr04	irgsp1_rep	mRNA	29072739	29074430	.	-	.	ID=Os04t0576850-00;Name=Os04t0576850-00;Locus_id=Os04g0576850;Note=Non-protein coding transcript.;Transcript_evidence=BT086913 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0576850-00
Chr04	irgsp1_rep	exon	29074266	29074430	.	-	.	Parent=Os04t0576850-00
Chr04	irgsp1_rep	exon	29073475	29073855	.	-	.	Parent=Os04t0576850-00
Chr04	irgsp1_rep	exon	29072739	29072828	.	-	.	Parent=Os04t0576850-00
Chr04	irgsp1_rep	mRNA	29084153	29086526	.	+	.	ID=Os04t0576900-01;Name=Os04t0576900-01;Locus_id=Os04g0576900;RAP-DB Gene Symbol Synonym(s)=XIAO;CGSNL Gene Symbol=XIAO;Oryzabase Gene Symbol Synonym(s)=OsXIAO;Oryzabase Gene Name Synonym(s)=LRR-RLK protein XIAO;Note=LRR receptor-like kinase%2C Control of organ size;Transcript_evidence=AK102667 (truncated),JQ234882 (Zhonghua 11);ORF_evidence=G9LZD7;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=Leucine-rich repeat domain superfamily (IPR032675),Protein kinase-like domain superfamily (IPR011009),Protein kinase domain (IPR000719),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J033101N13 (truncated);Manual Curation=February 14%2C 2020;Literature_PMID=22151303;Oryzabase=14311;Expression=AK102667;TENOR=Os04t0576900-01;KEGG=Os04t0576900-01;Comment=There might be sequencing errors in this region.
Chr04	irgsp1_rep	five_prime_UTR	29084153	29084153	.	+	.	Parent=Os04t0576900-01
Chr04	irgsp1_rep	CDS	29084154	29086022	.	+	0	Parent=Os04t0576900-01
Chr04	irgsp1_rep	three_prime_UTR	29086023	29086526	.	+	.	Parent=Os04t0576900-01
Chr04	irgsp1_rep	mRNA	29088828	29092957	.	+	.	ID=Os04t0577000-01;Name=Os04t0577000-01;Locus_id=Os04g0577000;Note=Similar to H0404F02.2 protein.;Transcript_evidence=AK073711 (DDBJ%2C Best hit);ORF_evidence=Q01KJ5 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);InterPro=Ubiquitin fusion degradation protein UFD1 (IPR004854);NIAS_FLcDNA=J033061G23;TENOR=Os04t0577000-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	29088828	29088939	.	+	.	Parent=Os04t0577000-01
Chr04	irgsp1_rep	five_prime_UTR	29089515	29089556	.	+	.	Parent=Os04t0577000-01
Chr04	irgsp1_rep	CDS	29089557	29089559	.	+	0	Parent=Os04t0577000-01
Chr04	irgsp1_rep	CDS	29090204	29090281	.	+	0	Parent=Os04t0577000-01
Chr04	irgsp1_rep	CDS	29090398	29090422	.	+	0	Parent=Os04t0577000-01
Chr04	irgsp1_rep	CDS	29090515	29090547	.	+	2	Parent=Os04t0577000-01
Chr04	irgsp1_rep	CDS	29090618	29090739	.	+	2	Parent=Os04t0577000-01
Chr04	irgsp1_rep	CDS	29090840	29090970	.	+	0	Parent=Os04t0577000-01
Chr04	irgsp1_rep	CDS	29091066	29091292	.	+	1	Parent=Os04t0577000-01
Chr04	irgsp1_rep	CDS	29091999	29092255	.	+	2	Parent=Os04t0577000-01
Chr04	irgsp1_rep	CDS	29092683	29092769	.	+	0	Parent=Os04t0577000-01
Chr04	irgsp1_rep	three_prime_UTR	29092770	29092957	.	+	.	Parent=Os04t0577000-01
Chr04	irgsp1_rep	mRNA	29088853	29091652	.	+	.	ID=Os04t0577000-02;Name=Os04t0577000-02;Locus_id=Os04g0577000;Note=Similar to H0404F02.2 protein.;Transcript_evidence=AK119957 (DDBJ%2C Best hit);ORF_evidence=Q01KJ5 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);InterPro=Ubiquitin fusion degradation protein UFD1 (IPR004854);NIAS_FLcDNA=002-184-C12;TENOR=Os04t0577000-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	29088853	29088939	.	+	.	Parent=Os04t0577000-02
Chr04	irgsp1_rep	five_prime_UTR	29089515	29089556	.	+	.	Parent=Os04t0577000-02
Chr04	irgsp1_rep	CDS	29089557	29089559	.	+	0	Parent=Os04t0577000-02
Chr04	irgsp1_rep	CDS	29090204	29090281	.	+	0	Parent=Os04t0577000-02
Chr04	irgsp1_rep	CDS	29090398	29090422	.	+	0	Parent=Os04t0577000-02
Chr04	irgsp1_rep	CDS	29090515	29090547	.	+	2	Parent=Os04t0577000-02
Chr04	irgsp1_rep	CDS	29090618	29090739	.	+	2	Parent=Os04t0577000-02
Chr04	irgsp1_rep	CDS	29090840	29090970	.	+	0	Parent=Os04t0577000-02
Chr04	irgsp1_rep	CDS	29091066	29091309	.	+	1	Parent=Os04t0577000-02
Chr04	irgsp1_rep	three_prime_UTR	29091310	29091652	.	+	.	Parent=Os04t0577000-02
Chr04	irgsp1_rep	mRNA	29106079	29109537	.	+	.	ID=Os04t0577200-01;Name=Os04t0577200-01;Locus_id=Os04g0577200;Note=Similar to Rac GTPase activating protein 1.;Transcript_evidence=AK101984 (DDBJ%2C Best hit);ORF_evidence=Q01KJ4 (UniProt);GO=Biological Process: signal transduction (GO:0007165),Cellular Component: intracellular (GO:0005622),Molecular Function: protein binding (GO:0005515);InterPro=PAK-box/P21-Rho-binding (IPR000095),Rho GTPase-activating protein domain (IPR000198),Rho GTPase activation protein (IPR008936);NIAS_FLcDNA=J033078K23;Expression=AK101984;TENOR=Os04t0577200-01;KEGG=Os04t0577200-01
Chr04	irgsp1_rep	five_prime_UTR	29106079	29106135	.	+	.	Parent=Os04t0577200-01
Chr04	irgsp1_rep	CDS	29106136	29106536	.	+	0	Parent=Os04t0577200-01
Chr04	irgsp1_rep	CDS	29107739	29107859	.	+	1	Parent=Os04t0577200-01
Chr04	irgsp1_rep	CDS	29107948	29108067	.	+	0	Parent=Os04t0577200-01
Chr04	irgsp1_rep	CDS	29108467	29108697	.	+	0	Parent=Os04t0577200-01
Chr04	irgsp1_rep	CDS	29108772	29109338	.	+	0	Parent=Os04t0577200-01
Chr04	irgsp1_rep	three_prime_UTR	29109339	29109537	.	+	.	Parent=Os04t0577200-01
Chr04	irgsp1_rep	mRNA	29110134	29112815	.	+	.	ID=Os04t0577300-01;Name=Os04t0577300-01;Locus_id=Os04g0577300;CGSNL Gene Symbol=GELP58;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 58;Oryzabase Gene Symbol Synonym(s)=OsGELP58%2C OsGELP58a%2C OsGELP58b%2C OsGELP58c%2C OsGELP58d;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 58;Note=Similar to GDSL-motif lipase/hydrolase-like protein.;Transcript_evidence=AK120597 (DDBJ%2C Best hit);ORF_evidence=Q01KJ3 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=J013148A09;Oryzabase=11008;Expression=AK120597;TENOR=Os04t0577300-01;KEGG=Os04t0577300-01
Chr04	irgsp1_rep	five_prime_UTR	29110134	29110135	.	+	.	Parent=Os04t0577300-01
Chr04	irgsp1_rep	CDS	29110136	29110415	.	+	0	Parent=Os04t0577300-01
Chr04	irgsp1_rep	CDS	29111268	29111411	.	+	2	Parent=Os04t0577300-01
Chr04	irgsp1_rep	CDS	29111491	29111621	.	+	2	Parent=Os04t0577300-01
Chr04	irgsp1_rep	CDS	29111711	29111953	.	+	0	Parent=Os04t0577300-01
Chr04	irgsp1_rep	CDS	29112044	29112302	.	+	0	Parent=Os04t0577300-01
Chr04	irgsp1_rep	CDS	29112418	29112653	.	+	2	Parent=Os04t0577300-01
Chr04	irgsp1_rep	three_prime_UTR	29112654	29112815	.	+	.	Parent=Os04t0577300-01
Chr04	irgsp1_rep	mRNA	29113086	29113537	.	-	.	ID=Os04t0577337-00;Name=Os04t0577337-00;Locus_id=Os04g0577337;Note=Conserved hypothetical protein.;Transcript_evidence=EU947353 (DDBJ);ORF_evidence=B9FC39 (UniProt);TENOR=Os04t0577337-00
Chr04	irgsp1_rep	five_prime_UTR	29113506	29113537	.	-	.	Parent=Os04t0577337-00
Chr04	irgsp1_rep	CDS	29113086	29113505	.	-	0	Parent=Os04t0577337-00
Chr04	irgsp1_rep	mRNA	29113174	29113538	.	+	.	ID=Os04t0577375-00;Name=Os04t0577375-00;Locus_id=Os04g0577375;Note=Hypothetical conserved gene.;Transcript_evidence=EU973553 (DDBJ);ORF_evidence=B9FC39 (UniProt);TENOR=Os04t0577375-00;KEGG=Os04t0577375-00
Chr04	irgsp1_rep	five_prime_UTR	29113174	29113205	.	+	.	Parent=Os04t0577375-00
Chr04	irgsp1_rep	CDS	29113206	29113538	.	+	0	Parent=Os04t0577375-00
Chr04	irgsp1_rep	mRNA	29115574	29119638	.	-	.	ID=Os04t0577500-01;Name=Os04t0577500-01;Locus_id=Os04g0577500;Note=Deoxyribonuclease%2C TatD Mg-dependent domain containing protein.;Transcript_evidence=AK065648 (DDBJ%2C Best hit);ORF_evidence=Q01KJ2 (UniProt);GO=Molecular Function: endodeoxyribonuclease activity%2C producing 5'-phosphomonoesters (GO:0016888);InterPro=Deoxyribonuclease%2C TatD-related (IPR001130),Deoxyribonuclease%2C TatD Mg-dependent (IPR012278),Deoxyribonuclease%2C TatD (IPR015992);NIAS_FLcDNA=J013035E21;Expression=AK065648;TENOR=Os04t0577500-01;KEGG=Os04t0577500-01 (EC:3.1.21.-)
Chr04	irgsp1_rep	five_prime_UTR	29119583	29119638	.	-	.	Parent=Os04t0577500-01
Chr04	irgsp1_rep	CDS	29119427	29119582	.	-	0	Parent=Os04t0577500-01
Chr04	irgsp1_rep	CDS	29119271	29119345	.	-	0	Parent=Os04t0577500-01
Chr04	irgsp1_rep	CDS	29119115	29119195	.	-	0	Parent=Os04t0577500-01
Chr04	irgsp1_rep	CDS	29117791	29117841	.	-	0	Parent=Os04t0577500-01
Chr04	irgsp1_rep	CDS	29117210	29117310	.	-	0	Parent=Os04t0577500-01
Chr04	irgsp1_rep	CDS	29116789	29116942	.	-	1	Parent=Os04t0577500-01
Chr04	irgsp1_rep	CDS	29116523	29116711	.	-	0	Parent=Os04t0577500-01
Chr04	irgsp1_rep	CDS	29115904	29116032	.	-	0	Parent=Os04t0577500-01
Chr04	irgsp1_rep	three_prime_UTR	29115574	29115903	.	-	.	Parent=Os04t0577500-01
Chr04	irgsp1_rep	mRNA	29115688	29119616	.	-	.	ID=Os04t0577500-02;Name=Os04t0577500-02;Locus_id=Os04g0577500;Note=Deoxyribonuclease%2C TatD Mg-dependent domain containing protein.;Transcript_evidence=AK104763 (DDBJ%2C Best hit),AK061538 (DDBJ%2C Best hit);ORF_evidence=Q01KJ2 (UniProt);GO=Molecular Function: endodeoxyribonuclease activity%2C producing 5'-phosphomonoesters (GO:0016888);InterPro=Deoxyribonuclease%2C TatD-related (IPR001130),Deoxyribonuclease%2C TatD Mg-dependent (IPR012278),Deoxyribonuclease%2C TatD (IPR015992);NIAS_FLcDNA=001-038-H04,006-310-G06;Expression=AK104763;TENOR=Os04t0577500-02;KEGG=Os04t0577500-02 (EC:3.1.21.-)
Chr04	irgsp1_rep	five_prime_UTR	29119583	29119616	.	-	.	Parent=Os04t0577500-02
Chr04	irgsp1_rep	CDS	29119427	29119582	.	-	0	Parent=Os04t0577500-02
Chr04	irgsp1_rep	CDS	29119271	29119345	.	-	0	Parent=Os04t0577500-02
Chr04	irgsp1_rep	CDS	29119115	29119195	.	-	0	Parent=Os04t0577500-02
Chr04	irgsp1_rep	CDS	29117791	29117841	.	-	0	Parent=Os04t0577500-02
Chr04	irgsp1_rep	CDS	29117210	29117310	.	-	0	Parent=Os04t0577500-02
Chr04	irgsp1_rep	CDS	29116789	29116942	.	-	1	Parent=Os04t0577500-02
Chr04	irgsp1_rep	CDS	29116523	29116711	.	-	0	Parent=Os04t0577500-02
Chr04	irgsp1_rep	CDS	29115904	29116032	.	-	0	Parent=Os04t0577500-02
Chr04	irgsp1_rep	three_prime_UTR	29115688	29115903	.	-	.	Parent=Os04t0577500-02
Chr04	irgsp1_rep	mRNA	29121639	29123027	.	-	.	ID=Os04t0577600-01;Name=Os04t0577600-01;Locus_id=Os04g0577600;Note=Hypothetical protein.;Transcript_evidence=AK107440 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-128-B04;Expression=AK107440;TENOR=Os04t0577600-01;KEGG=Os04t0577600-01
Chr04	irgsp1_rep	five_prime_UTR	29122852	29123027	.	-	.	Parent=Os04t0577600-01
Chr04	irgsp1_rep	CDS	29122291	29122851	.	-	0	Parent=Os04t0577600-01
Chr04	irgsp1_rep	three_prime_UTR	29122231	29122290	.	-	.	Parent=Os04t0577600-01
Chr04	irgsp1_rep	three_prime_UTR	29121639	29121926	.	-	.	Parent=Os04t0577600-01
Chr04	irgsp1_rep	mRNA	29121858	29123091	.	+	.	ID=Os04t0577700-01;Name=Os04t0577700-01;Locus_id=Os04g0577700;Oryzabase Gene Symbol Synonym(s)=OsOFP11%2C OsOFP16;Oryzabase Gene Name Synonym(s)=OVATE family protein 11%2C ovate family protein 16%2C OVATE-domain containing protein 16;Note=Protein of unknown function DUF623%2C plant domain containing protein.;Transcript_evidence=AK108703 (DDBJ%2C Best hit);ORF_evidence=Q01KJ1 (UniProt);InterPro=Domain of unknown function DUF623 (IPR006458);NIAS_FLcDNA=002-150-A01;Oryzabase=18307;Expression=AK108703;TENOR=Os04t0577700-01;KEGG=Os04t0577700-01
Chr04	irgsp1_rep	five_prime_UTR	29121858	29121883	.	+	.	Parent=Os04t0577700-01
Chr04	irgsp1_rep	CDS	29121884	29122987	.	+	0	Parent=Os04t0577700-01
Chr04	irgsp1_rep	three_prime_UTR	29122988	29123091	.	+	.	Parent=Os04t0577700-01
Chr04	irgsp1_rep	mRNA	29124648	29126984	.	-	.	ID=Os04t0577800-01;Name=Os04t0577800-01;Locus_id=Os04g0577800;Note=Uncharacterised protein family UPF0136%2C Transmembrane domain containing protein.;Transcript_evidence=AK243565 (DDBJ%2C Best hit);ORF_evidence=Q01KJ0 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Uncharacterised protein family UPF0136%2C Transmembrane (IPR005349);NIAS_FLcDNA=J100080N01;TENOR=Os04t0577800-01;KEGG=Os04t0577800-01
Chr04	irgsp1_rep	five_prime_UTR	29126904	29126984	.	-	.	Parent=Os04t0577800-01
Chr04	irgsp1_rep	CDS	29126684	29126903	.	-	0	Parent=Os04t0577800-01
Chr04	irgsp1_rep	CDS	29126543	29126607	.	-	2	Parent=Os04t0577800-01
Chr04	irgsp1_rep	CDS	29125081	29125168	.	-	0	Parent=Os04t0577800-01
Chr04	irgsp1_rep	CDS	29124889	29124998	.	-	2	Parent=Os04t0577800-01
Chr04	irgsp1_rep	three_prime_UTR	29124648	29124888	.	-	.	Parent=Os04t0577800-01
Chr04	irgsp1_rep	mRNA	29131883	29134682	.	-	.	ID=Os04t0578000-01;Name=Os04t0578000-01;Locus_id=Os04g0578000;RAP-DB Gene Symbol Synonym(s)=ACS2%2C OsACS2%2C Os-ACS2;RAP-DB Gene Name Synonym(s)=ACC SYNTHASE 2%2C ACC synthase 2%2C 1-aminocyclopropane-1-carboxylic acid synthase 2;CGSNL Gene Symbol=ACS2;CGSNL Gene Name=ACC SYNTHASE 2;Oryzabase Gene Symbol Synonym(s)=OsACS2%2C Os-ACS2;Oryzabase Gene Name Synonym(s)=ACC synthase 2%2C 1-aminocyclopropane-1-carboxylic acid synthase 2;Note=ACC synthase%2C Ethylene biosynthesis;Transcript_evidence=AK064250;ORF_evidence=Q7XQ85;GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent transferase (IPR015424),Aminotransferase%2C class I/classII (IPR004839),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Aminotransferases%2C class-I%2C pyridoxal-phosphate-binding site (IPR004838);NIAS_FLcDNA=002-105-C04;Manual Curation=November 24%2C 2009;Literature_PMID=17012402;Oryzabase=6850;Expression=AK064250;TENOR=Os04t0578000-01;KEGG=Os04t0578000-01 (EC:4.4.1.14)
Chr04	irgsp1_rep	five_prime_UTR	29134467	29134682	.	-	.	Parent=Os04t0578000-01
Chr04	irgsp1_rep	CDS	29134305	29134466	.	-	0	Parent=Os04t0578000-01
Chr04	irgsp1_rep	CDS	29134080	29134211	.	-	0	Parent=Os04t0578000-01
Chr04	irgsp1_rep	CDS	29133730	29133890	.	-	0	Parent=Os04t0578000-01
Chr04	irgsp1_rep	CDS	29132327	29133323	.	-	1	Parent=Os04t0578000-01
Chr04	irgsp1_rep	three_prime_UTR	29131883	29132326	.	-	.	Parent=Os04t0578000-01
Chr04	irgsp1_rep	mRNA	29149194	29150722	.	+	.	ID=Os04t0578200-01;Name=Os04t0578200-01;Locus_id=Os04g0578200;Note=Similar to H0404F02.9 protein.;Transcript_evidence=AK073300 (DDBJ%2C Best hit);ORF_evidence=Q01KI8 (UniProt);InterPro=Protein of unknown function DUF2358 (IPR018790);NIAS_FLcDNA=J033027E15;TENOR=Os04t0578200-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	29149194	29149262	.	+	.	Parent=Os04t0578200-01
Chr04	irgsp1_rep	CDS	29149263	29149626	.	+	0	Parent=Os04t0578200-01
Chr04	irgsp1_rep	CDS	29149786	29149940	.	+	2	Parent=Os04t0578200-01
Chr04	irgsp1_rep	CDS	29150059	29150125	.	+	0	Parent=Os04t0578200-01
Chr04	irgsp1_rep	CDS	29150222	29150265	.	+	2	Parent=Os04t0578200-01
Chr04	irgsp1_rep	CDS	29150426	29150539	.	+	0	Parent=Os04t0578200-01
Chr04	irgsp1_rep	three_prime_UTR	29150540	29150722	.	+	.	Parent=Os04t0578200-01
Chr04	irgsp1_rep	mRNA	29151388	29151637	.	+	.	ID=Os04t0578250-00;Name=Os04t0578250-00;Locus_id=Os04g0578250;Note=Non-protein coding transcript.;Transcript_evidence=FP099853 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0578250-00
Chr04	irgsp1_rep	exon	29151388	29151637	.	+	.	Parent=Os04t0578250-00
Chr04	irgsp1_rep	mRNA	29152972	29153947	.	+	.	ID=Os04t0578300-00;Name=Os04t0578300-00;Locus_id=Os04g0578300;Note=Similar to H0404F02.10 protein.;Transcript_evidence=CT835022 (DDBJ%2C Best hit);ORF_evidence=Q01KI7 (UniProt);TENOR=Os04t0578300-00;KEGG=Os04t0578300-00
Chr04	irgsp1_rep	five_prime_UTR	29152972	29153031	.	+	.	Parent=Os04t0578300-00
Chr04	irgsp1_rep	CDS	29153032	29153334	.	+	0	Parent=Os04t0578300-00
Chr04	irgsp1_rep	CDS	29153454	29153534	.	+	0	Parent=Os04t0578300-00
Chr04	irgsp1_rep	three_prime_UTR	29153535	29153947	.	+	.	Parent=Os04t0578300-00
Chr04	irgsp1_rep	mRNA	29157213	29159260	.	+	.	ID=Os04t0578400-01;Name=Os04t0578400-01;Locus_id=Os04g0578400;Oryzabase Gene Symbol Synonym(s)=OsBCH2%2C BCH2%2C OsHYD1%2C HYD1;Oryzabase Gene Name Synonym(s)=beta-Carotene Hydroxylase 2%2C carotene beta-ring hydroxylase 1;Note=Similar to Beta-ring hydroxylase (Fragment).;Transcript_evidence=AK060559 (DDBJ%2C Best hit);ORF_evidence=Q01KI6 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Fatty acid hydroxylase (IPR006694);NIAS_FLcDNA=001-022-E08;Oryzabase=16766;Expression=AK060559;TENOR=Os04t0578400-01;KEGG=Os04t0578400-01 (EC:1.14.13.-)
Chr04	irgsp1_rep	five_prime_UTR	29157213	29157314	.	+	.	Parent=Os04t0578400-01
Chr04	irgsp1_rep	CDS	29157315	29157725	.	+	0	Parent=Os04t0578400-01
Chr04	irgsp1_rep	CDS	29157864	29157923	.	+	0	Parent=Os04t0578400-01
Chr04	irgsp1_rep	CDS	29158024	29158230	.	+	0	Parent=Os04t0578400-01
Chr04	irgsp1_rep	CDS	29158341	29158466	.	+	0	Parent=Os04t0578400-01
Chr04	irgsp1_rep	CDS	29158588	29158644	.	+	0	Parent=Os04t0578400-01
Chr04	irgsp1_rep	CDS	29158767	29158835	.	+	0	Parent=Os04t0578400-01
Chr04	irgsp1_rep	three_prime_UTR	29158836	29159260	.	+	.	Parent=Os04t0578400-01
Chr04	irgsp1_rep	mRNA	29163356	29165144	.	+	.	ID=Os04t0578550-00;Name=Os04t0578550-00;Locus_id=Os04g0578550;Note=Hypothetical conserved gene.;Transcript_evidence=CU405845 (DDBJ%2C Best hit);ORF_evidence=A2XWQ0 (UniProt);TENOR=Os04t0578550-00;KEGG=Os04t0578550-00
Chr04	irgsp1_rep	CDS	29163356	29163473	.	+	0	Parent=Os04t0578550-00
Chr04	irgsp1_rep	CDS	29164379	29164506	.	+	2	Parent=Os04t0578550-00
Chr04	irgsp1_rep	three_prime_UTR	29164507	29164765	.	+	.	Parent=Os04t0578550-00
Chr04	irgsp1_rep	three_prime_UTR	29164852	29165144	.	+	.	Parent=Os04t0578550-00
Chr04	irgsp1_rep	mRNA	29178889	29181660	.	-	.	ID=Os04t0578600-01;Name=Os04t0578600-01;Locus_id=Os04g0578600;CGSNL Gene Symbol=FRO2;CGSNL Gene Name=FERRIC REDUCTASE 2;Oryzabase Gene Symbol Synonym(s)=OsFRO2%2C OsFRO1;Oryzabase Gene Name Synonym(s)=ferric reductase oxidase 2%2C ferric reductase oxidase 1;Note=Similar to H0404F02.15 protein.;Transcript_evidence=AK068159 (DDBJ%2C Best hit);ORF_evidence=Q01KI2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: integral to membrane (GO:0016021),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=FAD-binding 8 (IPR013112),Ferric reductase%2C NAD binding (IPR013121),Flavoprotein transmembrane component (IPR013130),Ferredoxin reductase-type FAD-binding domain (IPR017927);NIAS_FLcDNA=J013135D03;Manual Curation=June 21%2C 2019;Oryzabase=11858,8969;TENOR=Os04t0578600-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	29181393	29181660	.	-	.	Parent=Os04t0578600-01
Chr04	irgsp1_rep	five_prime_UTR	29181128	29181282	.	-	.	Parent=Os04t0578600-01
Chr04	irgsp1_rep	five_prime_UTR	29180711	29181008	.	-	.	Parent=Os04t0578600-01
Chr04	irgsp1_rep	CDS	29180459	29180710	.	-	0	Parent=Os04t0578600-01
Chr04	irgsp1_rep	CDS	29180048	29180375	.	-	0	Parent=Os04t0578600-01
Chr04	irgsp1_rep	CDS	29179228	29179970	.	-	2	Parent=Os04t0578600-01
Chr04	irgsp1_rep	three_prime_UTR	29178889	29179227	.	-	.	Parent=Os04t0578600-01
Chr04	irgsp1_rep	mRNA	29178862	29181665	.	-	.	ID=Os04t0578600-02;Name=Os04t0578600-02;Locus_id=Os04g0578600;RAP-DB Gene Symbol Synonym(s)=OsFRO2%2C OsFRO1;RAP-DB Gene Name Synonym(s)=Ferric reductase oxidase 2%2C ferric reductase oxidase 1;CGSNL Gene Symbol=FRO2;CGSNL Gene Name=FERRIC REDUCTASE 2;Oryzabase Gene Symbol Synonym(s)=OsFRO2%2C OsFRO1;Oryzabase Gene Name Synonym(s)=ferric reductase oxidase 2%2C ferric reductase oxidase 1;Note=Ferric reductase oxidase%2C Iron homeostasis%2C "Drought%2C heat%2C salinity stress response";Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Ferredoxin-NADP reductase (FNR)%2C nucleotide-binding domain (IPR039261),Ferric reductase transmembrane component-like domain (IPR013130),FAD-binding domain%2C ferredoxin reductase-type (IPR017927),FAD-binding 8 (IPR013112),Ferric reductase%2C NAD binding domain (IPR013121);Manual Curation=June 21%2C 2019;Literature_PMID=31214220,23629674;Oryzabase=11858,8969;Subcellular location=cytoplasm (GO:0005737) [mainly]
Chr04	irgsp1_rep	five_prime_UTR	29181393	29181665	.	-	.	Parent=Os04t0578600-02
Chr04	irgsp1_rep	five_prime_UTR	29181128	29181282	.	-	.	Parent=Os04t0578600-02
Chr04	irgsp1_rep	five_prime_UTR	29180990	29181008	.	-	.	Parent=Os04t0578600-02
Chr04	irgsp1_rep	CDS	29180826	29180989	.	-	0	Parent=Os04t0578600-02
Chr04	irgsp1_rep	CDS	29180459	29180693	.	-	1	Parent=Os04t0578600-02
Chr04	irgsp1_rep	CDS	29180048	29180375	.	-	0	Parent=Os04t0578600-02
Chr04	irgsp1_rep	CDS	29179228	29179970	.	-	2	Parent=Os04t0578600-02
Chr04	irgsp1_rep	three_prime_UTR	29178862	29179227	.	-	.	Parent=Os04t0578600-02
Chr04	irgsp1_rep	mRNA	29187056	29193576	.	+	.	ID=Os04t0578700-01;Name=Os04t0578700-01;Locus_id=Os04g0578700;Note=Similar to H0404F02.16 protein.;Transcript_evidence=AK072398 (DDBJ%2C Best hit);ORF_evidence=Q01KI1 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020);InterPro=Mechanosensitive ion channel MscS (IPR006685),Like-Sm ribonucleoprotein (LSM)-related domain (IPR010920),Mechanosensitive ion channel MscS%2C transmembrane-2 (IPR011014);NIAS_FLcDNA=J023078O17;TENOR=Os04t0578700-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	29187056	29187230	.	+	.	Parent=Os04t0578700-01
Chr04	irgsp1_rep	five_prime_UTR	29188184	29188241	.	+	.	Parent=Os04t0578700-01
Chr04	irgsp1_rep	CDS	29188242	29189014	.	+	0	Parent=Os04t0578700-01
Chr04	irgsp1_rep	CDS	29189172	29189431	.	+	1	Parent=Os04t0578700-01
Chr04	irgsp1_rep	CDS	29189880	29189980	.	+	2	Parent=Os04t0578700-01
Chr04	irgsp1_rep	CDS	29190742	29190849	.	+	0	Parent=Os04t0578700-01
Chr04	irgsp1_rep	CDS	29191890	29192117	.	+	0	Parent=Os04t0578700-01
Chr04	irgsp1_rep	CDS	29192549	29192653	.	+	0	Parent=Os04t0578700-01
Chr04	irgsp1_rep	three_prime_UTR	29192654	29192681	.	+	.	Parent=Os04t0578700-01
Chr04	irgsp1_rep	three_prime_UTR	29193277	29193576	.	+	.	Parent=Os04t0578700-01
Chr04	irgsp1_rep	mRNA	29192054	29193583	.	+	.	ID=Os04t0578700-02;Name=Os04t0578700-02;Locus_id=Os04g0578700;Note=Similar to H0404F02.16 protein.;Transcript_evidence=AK104058 (DDBJ%2C Best hit);ORF_evidence=Q01KI1 (UniProt);NIAS_FLcDNA=001-024-F06;TENOR=Os04t0578700-02;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	29192054	29192054	.	+	.	Parent=Os04t0578700-02
Chr04	irgsp1_rep	CDS	29192055	29192117	.	+	0	Parent=Os04t0578700-02
Chr04	irgsp1_rep	CDS	29192549	29192653	.	+	0	Parent=Os04t0578700-02
Chr04	irgsp1_rep	three_prime_UTR	29192654	29192681	.	+	.	Parent=Os04t0578700-02
Chr04	irgsp1_rep	three_prime_UTR	29193277	29193583	.	+	.	Parent=Os04t0578700-02
Chr04	irgsp1_rep	mRNA	29194394	29197064	.	-	.	ID=Os04t0578800-01;Name=Os04t0578800-01;Locus_id=Os04g0578800;Note=Protein of unknown function DUF604 family protein.;Transcript_evidence=AK072395 (DDBJ%2C Best hit);ORF_evidence=Q01KI0 (UniProt);InterPro=Protein of unknown function DUF604 (IPR006740);NIAS_FLcDNA=J023076N09;Expression=AK072395;TENOR=Os04t0578800-01;KEGG=Os04t0578800-01
Chr04	irgsp1_rep	five_prime_UTR	29196886	29197064	.	-	.	Parent=Os04t0578800-01
Chr04	irgsp1_rep	CDS	29195434	29196885	.	-	0	Parent=Os04t0578800-01
Chr04	irgsp1_rep	CDS	29194924	29195046	.	-	0	Parent=Os04t0578800-01
Chr04	irgsp1_rep	three_prime_UTR	29194394	29194923	.	-	.	Parent=Os04t0578800-01
Chr04	irgsp1_rep	mRNA	29194833	29196961	.	-	.	ID=Os04t0578800-02;Name=Os04t0578800-02;Locus_id=Os04g0578800;Note=Protein of unknown function DUF604 family protein.;Transcript_evidence=AK069652 (DDBJ%2C Best hit);ORF_evidence=Q01KI0 (UniProt);InterPro=Protein of unknown function DUF604 (IPR006740);NIAS_FLcDNA=J023029L08;Expression=AK069652;TENOR=Os04t0578800-02;KEGG=Os04t0578800-02
Chr04	irgsp1_rep	five_prime_UTR	29196886	29196961	.	-	.	Parent=Os04t0578800-02
Chr04	irgsp1_rep	CDS	29195434	29196885	.	-	0	Parent=Os04t0578800-02
Chr04	irgsp1_rep	CDS	29194924	29195046	.	-	0	Parent=Os04t0578800-02
Chr04	irgsp1_rep	three_prime_UTR	29194833	29194923	.	-	.	Parent=Os04t0578800-02
Chr04	irgsp1_rep	mRNA	29194841	29196932	.	+	.	ID=Os04t0578833-00;Name=Os04t0578833-00;Locus_id=Os04g0578833;Note=Hypothetical gene.;Transcript_evidence=tplb0043c01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0578833-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	29194841	29195058	.	+	.	Parent=Os04t0578833-00
Chr04	irgsp1_rep	five_prime_UTR	29195446	29195818	.	+	.	Parent=Os04t0578833-00
Chr04	irgsp1_rep	CDS	29195819	29196184	.	+	0	Parent=Os04t0578833-00
Chr04	irgsp1_rep	three_prime_UTR	29196185	29196932	.	+	.	Parent=Os04t0578833-00
Chr04	irgsp1_rep	mRNA	29200394	29203835	.	-	.	ID=Os04t0578900-00;Name=Os04t0578900-00;Locus_id=Os04g0578900;Note=Similar to H0404F02.18 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01KH9 (UniProt);TENOR=Os04t0578900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	29203779	29203835	.	-	0	Parent=Os04t0578900-00
Chr04	irgsp1_rep	CDS	29200729	29200878	.	-	0	Parent=Os04t0578900-00
Chr04	irgsp1_rep	CDS	29200394	29200657	.	-	0	Parent=Os04t0578900-00
Chr04	irgsp1_rep	mRNA	29213355	29214344	.	-	.	ID=Os04t0579200-01;Name=Os04t0579200-01;Locus_id=Os04g0579200;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK100603 (DDBJ%2C Best hit);ORF_evidence=NP_191705.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J023107E20;Expression=AK100603;TENOR=Os04t0579200-01;KEGG=Os04t0579200-01
Chr04	irgsp1_rep	five_prime_UTR	29214277	29214344	.	-	.	Parent=Os04t0579200-01
Chr04	irgsp1_rep	CDS	29213638	29214276	.	-	0	Parent=Os04t0579200-01
Chr04	irgsp1_rep	three_prime_UTR	29213355	29213637	.	-	.	Parent=Os04t0579200-01
Chr04	irgsp1_rep	mRNA	29247497	29249631	.	+	.	ID=Os04t0579700-01;Name=Os04t0579700-01;Locus_id=Os04g0579700;Note=Similar to Predicted protein.;Transcript_evidence=AK065545 (DDBJ%2C Best hit);ORF_evidence=NP_176570.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069);NIAS_FLcDNA=J013034F23;Expression=AK065545;TENOR=Os04t0579700-01;KEGG=Os04t0579700-01
Chr04	irgsp1_rep	five_prime_UTR	29247497	29247676	.	+	.	Parent=Os04t0579700-01
Chr04	irgsp1_rep	CDS	29247677	29248279	.	+	0	Parent=Os04t0579700-01
Chr04	irgsp1_rep	CDS	29248364	29249362	.	+	0	Parent=Os04t0579700-01
Chr04	irgsp1_rep	three_prime_UTR	29249363	29249631	.	+	.	Parent=Os04t0579700-01
Chr04	irgsp1_rep	mRNA	29254004	29259182	.	+	.	ID=Os04t0580001-01;Name=Os04t0580001-01;Locus_id=Os04g0580001;Note=Hypothetical gene.;Transcript_evidence=AK288241 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090013L13;TENOR=Os04t0580001-01
Chr04	irgsp1_rep	five_prime_UTR	29254004	29258736	.	+	.	Parent=Os04t0580001-01
Chr04	irgsp1_rep	CDS	29258737	29259182	.	+	0	Parent=Os04t0580001-01
Chr04	irgsp1_rep	mRNA	29275043	29277269	.	-	.	ID=Os04t0580300-01;Name=Os04t0580300-01;Locus_id=Os04g0580300;CGSNL Gene Symbol=GRAS22;CGSNL Gene Name=GRAS PROTEIN 22;Oryzabase Gene Symbol Synonym(s)=OsGRAS-22%2C OsGRAS22%2C GRAS-22;Oryzabase Gene Name Synonym(s)=GRAS protein 22;Note=GRAS transcription factor domain containing protein.;Transcript_evidence=AK100294 (DDBJ%2C Best hit);ORF_evidence=NP_001147939.1 (RefSeq);InterPro=Transcription factor GRAS (IPR005202);NIAS_FLcDNA=J023075P18;Oryzabase=22789;Expression=AK100294;TENOR=Os04t0580300-01;KEGG=Os04t0580300-01
Chr04	irgsp1_rep	five_prime_UTR	29277091	29277269	.	-	.	Parent=Os04t0580300-01
Chr04	irgsp1_rep	CDS	29275231	29277090	.	-	0	Parent=Os04t0580300-01
Chr04	irgsp1_rep	three_prime_UTR	29275043	29275230	.	-	.	Parent=Os04t0580300-01
Chr04	irgsp1_rep	mRNA	29276099	29276954	.	+	.	ID=Os04t0580350-00;Name=Os04t0580350-00;Locus_id=Os04g0580350;Note=Hypothetical protein.;Transcript_evidence=EU944668 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0580350-00
Chr04	irgsp1_rep	five_prime_UTR	29276099	29276275	.	+	.	Parent=Os04t0580350-00
Chr04	irgsp1_rep	CDS	29276276	29276400	.	+	0	Parent=Os04t0580350-00
Chr04	irgsp1_rep	CDS	29276815	29276929	.	+	1	Parent=Os04t0580350-00
Chr04	irgsp1_rep	three_prime_UTR	29276930	29276954	.	+	.	Parent=Os04t0580350-00
Chr04	irgsp1_rep	mRNA	29289244	29291788	.	-	.	ID=Os04t0580400-01;Name=Os04t0580400-01;Locus_id=Os04g0580400;RAP-DB Gene Symbol Synonym(s)=OsSCE3;RAP-DB Gene Name Synonym(s)=SUMO-conjugating enzyme 3;CGSNL Gene Symbol=UBC3;CGSNL Gene Name=UBIQUITIN-CONJUGATING ENZYME 3;Oryzabase Gene Symbol Synonym(s)=OsUBC3%2C OsSCE1c%2C SCE1c%2C OsSCE1c.1%2C OsSCE1c.2;Oryzabase Gene Name Synonym(s)=Ubiquitin-conjugating enzyme 3%2C E2 SUMO conjugation enzyme 1c%2C SUMO conjugation enzyme 1c%2C E2 protein SCE1c;Note=SUMO conjugating enzyme%2C Drought stress response;Transcript_evidence=AK121581;ORF_evidence=NP_001159056.1;InterPro=Ubiquitin-conjugating enzyme/RWD-like (IPR016135),Ubiquitin-conjugating enzyme E2 (IPR000608);NIAS_FLcDNA=J033037C10;Manual Curation=June 20%2C 2019;Literature_PMID=31212102;Oryzabase=19551;Expression=AK121581;TENOR=Os04t0580400-01;KEGG=Os04t0580400-01 (EC:6.3.2.19);Subcellular location=nucleus (GO:0005634)
Chr04	irgsp1_rep	five_prime_UTR	29291788	29291788	.	-	.	Parent=Os04t0580400-01
Chr04	irgsp1_rep	CDS	29291734	29291787	.	-	0	Parent=Os04t0580400-01
Chr04	irgsp1_rep	CDS	29289807	29289953	.	-	0	Parent=Os04t0580400-01
Chr04	irgsp1_rep	CDS	29289610	29289721	.	-	0	Parent=Os04t0580400-01
Chr04	irgsp1_rep	CDS	29289377	29289483	.	-	2	Parent=Os04t0580400-01
Chr04	irgsp1_rep	three_prime_UTR	29289244	29289376	.	-	.	Parent=Os04t0580400-01
Chr04	irgsp1_rep	mRNA	29289618	29292025	.	+	.	ID=Os04t0580450-00;Name=Os04t0580450-00;Locus_id=Os04g0580450;Note=Non-protein coding transcript.;Transcript_evidence=BT016839 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0580450-00
Chr04	irgsp1_rep	exon	29289618	29289711	.	+	.	Parent=Os04t0580450-00
Chr04	irgsp1_rep	exon	29289796	29289953	.	+	.	Parent=Os04t0580450-00
Chr04	irgsp1_rep	exon	29291734	29291816	.	+	.	Parent=Os04t0580450-00
Chr04	irgsp1_rep	exon	29291962	29292025	.	+	.	Parent=Os04t0580450-00
Chr04	irgsp1_rep	mRNA	29296472	29297646	.	-	.	ID=Os04t0580500-01;Name=Os04t0580500-01;Locus_id=Os04g0580500;Note=Protein of unknown function DUF1191 domain containing protein.;Transcript_evidence=AK111145 (DDBJ%2C Best hit);ORF_evidence=A3AWQ0 (UniProt);InterPro=Protein of unknown function DUF1191 (IPR010605);NIAS_FLcDNA=002-176-E07;TENOR=Os04t0580500-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	29297638	29297646	.	-	.	Parent=Os04t0580500-01
Chr04	irgsp1_rep	CDS	29296624	29297637	.	-	0	Parent=Os04t0580500-01
Chr04	irgsp1_rep	three_prime_UTR	29296472	29296623	.	-	.	Parent=Os04t0580500-01
Chr04	irgsp1_rep	mRNA	29308352	29314056	.	+	.	ID=Os04t0580700-01;Name=Os04t0580700-01;Locus_id=Os04g0580700;RAP-DB Gene Symbol Synonym(s)=MADS17%2C OsMADS17%2C NMADS3%2C RMADS213%2C nmads3;RAP-DB Gene Name Synonym(s)=MADS BOX GENE 17%2C MADS box gene17%2C MADS-box transcription factor 17;CGSNL Gene Symbol=MADS17;CGSNL Gene Name=MADS BOX GENE 17;Oryzabase Gene Symbol Synonym(s)=OsMADS17%2C NMADS3%2C RMADS213%2C nmads3;Oryzabase Gene Name Synonym(s)=MADS box gene17%2C MADS-box transcription factor 17;Note=MADS-box transcription factor%2C Regulation of floral organ identity and meristem fate;Transcript_evidence=FJ668596,AK070540;ORF_evidence=Q0JAS4;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700),Molecular Function: protein dimerization activity (GO:0046983),Cellular Component: nucleus (GO:0005634);InterPro=Transcription factor%2C MADS-box (IPR002100),Transcription factor%2C K-box (IPR002487);NIAS_FLcDNA=J023057B01;Manual Curation=December 25%2C 2015;Literature_PMID=19820190;Oryzabase=3085;TENOR=Os04t0580700-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	29308352	29308366	.	+	.	Parent=Os04t0580700-01
Chr04	irgsp1_rep	CDS	29308367	29308563	.	+	0	Parent=Os04t0580700-01
Chr04	irgsp1_rep	CDS	29310511	29310595	.	+	1	Parent=Os04t0580700-01
Chr04	irgsp1_rep	CDS	29310999	29311060	.	+	0	Parent=Os04t0580700-01
Chr04	irgsp1_rep	CDS	29311146	29311245	.	+	1	Parent=Os04t0580700-01
Chr04	irgsp1_rep	CDS	29311948	29311989	.	+	0	Parent=Os04t0580700-01
Chr04	irgsp1_rep	CDS	29313350	29313391	.	+	0	Parent=Os04t0580700-01
Chr04	irgsp1_rep	CDS	29313551	29313690	.	+	0	Parent=Os04t0580700-01
Chr04	irgsp1_rep	CDS	29313778	29313874	.	+	1	Parent=Os04t0580700-01
Chr04	irgsp1_rep	three_prime_UTR	29313875	29314056	.	+	.	Parent=Os04t0580700-01
Chr04	irgsp1_rep	mRNA	29317364	29318451	.	-	.	ID=Os04t0580800-01;Name=Os04t0580800-01;Locus_id=Os04g0580800;Oryzabase Gene Symbol Synonym(s)=OsRFPH2-6;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPH2-6%2C RING-H2 protein 6;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK067005 (DDBJ%2C Best hit);ORF_evidence=NP_001150265.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING-CH-type (IPR011016),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J013092H10;Oryzabase=11767;Expression=AK067005;TENOR=Os04t0580800-01;KEGG=Os04t0580800-01
Chr04	irgsp1_rep	five_prime_UTR	29318295	29318451	.	-	.	Parent=Os04t0580800-01
Chr04	irgsp1_rep	CDS	29317806	29318294	.	-	0	Parent=Os04t0580800-01
Chr04	irgsp1_rep	three_prime_UTR	29317364	29317805	.	-	.	Parent=Os04t0580800-01
Chr04	irgsp1_rep	mRNA	29323996	29324514	.	-	.	ID=Os04t0580866-00;Name=Os04t0580866-00;Locus_id=Os04g0580866;Note=Hypothetical conserved gene.;Transcript_evidence=EU969180 (DDBJ);ORF_evidence=Q7XSR3 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os04t0580866-00;KEGG=Os04t0580866-00
Chr04	irgsp1_rep	CDS	29323996	29324514	.	-	0	Parent=Os04t0580866-00
Chr04	irgsp1_rep	mRNA	29331563	29338260	.	+	.	ID=Os04t0581000-01;Name=Os04t0581000-01;Locus_id=Os04g0581000;CGSNL Gene Symbol=2ODD3;CGSNL Gene Name=2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 3;Oryzabase Gene Symbol Synonym(s)=2-ODD3%2C Os2-ODD3%2C Os2ODD3;Oryzabase Gene Name Synonym(s)=2-oxoglutarate-dependent dioxygenase 3;Note=Similar to Flavanone 3-hydroxylase (Fragment).;Transcript_evidence=AK104142 (DDBJ%2C Best hit),AK061337 (DDBJ%2C Best hit);ORF_evidence=Q0H3G8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=006-205-E07,006-303-C05;Oryzabase=22612;TENOR=Os04t0581000-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	29331563	29331637	.	+	.	Parent=Os04t0581000-01
Chr04	irgsp1_rep	CDS	29331638	29331838	.	+	0	Parent=Os04t0581000-01
Chr04	irgsp1_rep	CDS	29332104	29332351	.	+	0	Parent=Os04t0581000-01
Chr04	irgsp1_rep	CDS	29337102	29337429	.	+	1	Parent=Os04t0581000-01
Chr04	irgsp1_rep	CDS	29337752	29337997	.	+	0	Parent=Os04t0581000-01
Chr04	irgsp1_rep	three_prime_UTR	29337998	29338260	.	+	.	Parent=Os04t0581000-01
Chr04	irgsp1_rep	mRNA	29337099	29337993	.	-	.	ID=Os04t0581050-00;Name=Os04t0581050-00;Locus_id=Os04g0581050;Note=Hypothetical protein.;Transcript_evidence=tplb0008n13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0581050-00
Chr04	irgsp1_rep	five_prime_UTR	29337838	29337993	.	-	.	Parent=Os04t0581050-00
Chr04	irgsp1_rep	CDS	29337773	29337837	.	-	0	Parent=Os04t0581050-00
Chr04	irgsp1_rep	CDS	29337273	29337450	.	-	1	Parent=Os04t0581050-00
Chr04	irgsp1_rep	three_prime_UTR	29337099	29337272	.	-	.	Parent=Os04t0581050-00
Chr04	irgsp1_rep	mRNA	29339469	29341162	.	-	.	ID=Os04t0581100-01;Name=Os04t0581100-01;Locus_id=Os04g0581100;Oryzabase Gene Symbol Synonym(s)=OsS3H%2C S3H%2C 2-ODD1%2C Os2-ODD1%2C 2ODD1%2C Os2ODD1;Oryzabase Gene Name Synonym(s)=SALICYLIC ACID 3 HYDROXYLASE%2C 2-oxoglutarate-dependent dioxygenase 1;Note=2OG-Fe(II) oxygenase domain containing protein.;Transcript_evidence=AK100853 (DDBJ%2C Best hit);ORF_evidence=XP_002872519.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=J023123J08;Oryzabase=18463;Expression=AK100853;TENOR=Os04t0581100-01;KEGG=Os04t0581100-01
Chr04	irgsp1_rep	five_prime_UTR	29341068	29341162	.	-	.	Parent=Os04t0581100-01
Chr04	irgsp1_rep	CDS	29340840	29341067	.	-	0	Parent=Os04t0581100-01
Chr04	irgsp1_rep	CDS	29340484	29340731	.	-	0	Parent=Os04t0581100-01
Chr04	irgsp1_rep	CDS	29340043	29340364	.	-	1	Parent=Os04t0581100-01
Chr04	irgsp1_rep	CDS	29339683	29339943	.	-	0	Parent=Os04t0581100-01
Chr04	irgsp1_rep	three_prime_UTR	29339469	29339682	.	-	.	Parent=Os04t0581100-01
Chr04	irgsp1_rep	mRNA	29350946	29354190	.	-	.	ID=Os04t0581300-01;Name=Os04t0581300-01;Locus_id=Os04g0581300;Note=Similar to Mitochondrial import inner membrane translocase subunit TIM13.;Transcript_evidence=AK063093 (DDBJ%2C Best hit);ORF_evidence=Q9XGY5 (UniProt);GO=Biological Process: protein targeting to mitochondrion (GO:0006626),Biological Process: protein import into mitochondrial inner membrane (GO:0045039),Cellular Component: mitochondrial intermembrane space protein transporter complex (GO:0042719);InterPro=Mitochondrial inner membrane translocase complex%2C Tim8/9/10/13-zinc finger-like (IPR004217);NIAS_FLcDNA=001-111-B04;Expression=AK063093;TENOR=Os04t0581300-01;KEGG=Os04t0581300-01
Chr04	irgsp1_rep	five_prime_UTR	29354124	29354190	.	-	.	Parent=Os04t0581300-01
Chr04	irgsp1_rep	CDS	29354013	29354123	.	-	0	Parent=Os04t0581300-01
Chr04	irgsp1_rep	CDS	29351304	29351453	.	-	0	Parent=Os04t0581300-01
Chr04	irgsp1_rep	three_prime_UTR	29350946	29351303	.	-	.	Parent=Os04t0581300-01
Chr04	irgsp1_rep	mRNA	29366459	29367911	.	-	.	ID=Os04t0581400-01;Name=Os04t0581400-01;Locus_id=Os04g0581400;RAP-DB Gene Symbol Synonym(s)=RAVL1;RAP-DB Gene Name Synonym(s)=RAV-Like1%2C RAV-like 1 protein%2C RAV-LIKE 1;Oryzabase Gene Symbol Synonym(s)=RAVL1%2C RAVL%2C OsRAVL1;Oryzabase Gene Name Synonym(s)=RAV-Like1%2C RAV-like 1 protein%2C RAV-LIKE 1;Note=B3 DNA binding domain containing protein%2C Brassinosteroid homeostasis;Transcript_evidence=HM450152 (Genbank),(This transcript was sequenced from a Korean cultivar%2C Dongjin%2C and 1bp deletion (guanine) was observed in Nipponbare (between 29367253 and 29367254)%2C which resulted in the frameshift.);ORF_evidence=D9MNL6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=B3 DNA binding domain (IPR003340),DNA-binding pseudobarrel domain (IPR015300);Manual Curation=January 7%2C 2011;Literature_PMID=20581303;Oryzabase=14293;TENOR=Os04t0581400-00
Chr04	irgsp1_rep	CDS	29367030	29367911	.	-	0	Parent=Os04t0581400-01
Chr04	irgsp1_rep	three_prime_UTR	29366459	29367029	.	-	.	Parent=Os04t0581400-01
Chr04	irgsp1_rep	mRNA	29366710	29367909	.	+	.	ID=Os04t0581451-00;Name=Os04t0581451-00;Locus_id=Os04g0581451;Note=Hypothetical protein.;Transcript_evidence=tplb0021g13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0581451-00
Chr04	irgsp1_rep	five_prime_UTR	29366710	29366922	.	+	.	Parent=Os04t0581451-00
Chr04	irgsp1_rep	CDS	29366923	29367282	.	+	0	Parent=Os04t0581451-00
Chr04	irgsp1_rep	three_prime_UTR	29367283	29367909	.	+	.	Parent=Os04t0581451-00
Chr04	irgsp1_rep	mRNA	29390875	29392349	.	-	.	ID=Os04t0581502-00;Name=Os04t0581502-00;Locus_id=Os04g0581502;Note=Zinc finger%2C RING-CH-type domain containing protein.;Transcript_evidence=CT834317 (DDBJ%2C Best hit);ORF_evidence=NP_001172654.1 (RefSeq);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-CH-type (IPR011016),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);TENOR=Os04t0581502-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	29392278	29392349	.	-	.	Parent=Os04t0581502-00
Chr04	irgsp1_rep	CDS	29392089	29392277	.	-	0	Parent=Os04t0581502-00
Chr04	irgsp1_rep	three_prime_UTR	29391845	29392088	.	-	.	Parent=Os04t0581502-00
Chr04	irgsp1_rep	three_prime_UTR	29390875	29391767	.	-	.	Parent=Os04t0581502-00
Chr04	irgsp1_rep	mRNA	29391121	29392720	.	+	.	ID=Os04t0581600-01;Name=Os04t0581600-01;Locus_id=Os04g0581600;Note=Similar to UDP-glucose dehydrogenase.;Transcript_evidence=AK101692 (DDBJ%2C Best hit);ORF_evidence=NP_001151861.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: NAD binding (GO:0051287);InterPro=UDP-glucose/GDP-mannose dehydrogenase%2C N-terminal (IPR001732),6-phosphogluconate dehydrogenase%2C C-terminal-like (IPR008927),UDP-glucose/GDP-mannose dehydrogenase%2C dimerisation (IPR014026),NAD(P)-binding domain (IPR016040),CytoChrome c1%2C transmembrane anchor%2C C-terminal (IPR021157);NIAS_FLcDNA=J033059L02;Expression=AK101692;TENOR=Os04t0581600-01;KEGG=Os04t0581600-01 (EC:1.1.1.22)
Chr04	irgsp1_rep	five_prime_UTR	29391121	29391179	.	+	.	Parent=Os04t0581600-01
Chr04	irgsp1_rep	CDS	29391180	29391839	.	+	0	Parent=Os04t0581600-01
Chr04	irgsp1_rep	three_prime_UTR	29391840	29392720	.	+	.	Parent=Os04t0581600-01
Chr04	irgsp1_rep	mRNA	29407251	29407915	.	+	.	ID=Os04t0581700-01;Name=Os04t0581700-01;Locus_id=Os04g0581700;Note=Similar to predicted protein.;Transcript_evidence=AK063676 (DDBJ%2C Best hit);ORF_evidence=B9FC51 (UniProt);NIAS_FLcDNA=001-119-E01;Expression=AK063676;TENOR=Os04t0581700-01;KEGG=Os04t0581700-01
Chr04	irgsp1_rep	five_prime_UTR	29407251	29407332	.	+	.	Parent=Os04t0581700-01
Chr04	irgsp1_rep	CDS	29407333	29407530	.	+	0	Parent=Os04t0581700-01
Chr04	irgsp1_rep	three_prime_UTR	29407531	29407915	.	+	.	Parent=Os04t0581700-01
Chr04	irgsp1_rep	mRNA	29408910	29409617	.	-	.	ID=Os04t0581800-01;Name=Os04t0581800-01;Locus_id=Os04g0581800;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK107739 (DDBJ%2C Best hit);ORF_evidence=NP_001151445.1 (RefSeq);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);NIAS_FLcDNA=002-132-G07;TENOR=Os04t0581800-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	29409563	29409617	.	-	.	Parent=Os04t0581800-01
Chr04	irgsp1_rep	CDS	29409439	29409562	.	-	0	Parent=Os04t0581800-01
Chr04	irgsp1_rep	CDS	29409052	29409296	.	-	2	Parent=Os04t0581800-01
Chr04	irgsp1_rep	three_prime_UTR	29408910	29409051	.	-	.	Parent=Os04t0581800-01
Chr04	irgsp1_rep	mRNA	29412733	29416839	.	-	.	ID=Os04t0582000-00;Name=Os04t0582000-00;Locus_id=Os04g0582000;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001053657.2 (RefSeq);TENOR=Os04t0582000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	29416585	29416839	.	-	0	Parent=Os04t0582000-00
Chr04	irgsp1_rep	CDS	29415814	29416362	.	-	0	Parent=Os04t0582000-00
Chr04	irgsp1_rep	CDS	29415019	29415205	.	-	0	Parent=Os04t0582000-00
Chr04	irgsp1_rep	CDS	29414821	29414970	.	-	2	Parent=Os04t0582000-00
Chr04	irgsp1_rep	CDS	29413964	29414394	.	-	2	Parent=Os04t0582000-00
Chr04	irgsp1_rep	CDS	29413552	29413879	.	-	0	Parent=Os04t0582000-00
Chr04	irgsp1_rep	CDS	29413174	29413429	.	-	2	Parent=Os04t0582000-00
Chr04	irgsp1_rep	CDS	29412876	29413092	.	-	1	Parent=Os04t0582000-00
Chr04	irgsp1_rep	CDS	29412733	29412759	.	-	0	Parent=Os04t0582000-00
Chr04	irgsp1_rep	mRNA	29431012	29434383	.	-	.	ID=Os04t0582600-01;Name=Os04t0582600-01;Locus_id=Os04g0582600;Note=Conserved hypothetical protein.;Transcript_evidence=AK106444 (DDBJ%2C Best hit);ORF_evidence=Q7XUD7 (UniProt);NIAS_FLcDNA=002-103-E01;TENOR=Os04t0582600-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	29434301	29434383	.	-	.	Parent=Os04t0582600-01
Chr04	irgsp1_rep	CDS	29434040	29434300	.	-	0	Parent=Os04t0582600-01
Chr04	irgsp1_rep	CDS	29432120	29433454	.	-	0	Parent=Os04t0582600-01
Chr04	irgsp1_rep	CDS	29431867	29432032	.	-	0	Parent=Os04t0582600-01
Chr04	irgsp1_rep	CDS	29431705	29431782	.	-	2	Parent=Os04t0582600-01
Chr04	irgsp1_rep	CDS	29431417	29431551	.	-	2	Parent=Os04t0582600-01
Chr04	irgsp1_rep	CDS	29431148	29431326	.	-	2	Parent=Os04t0582600-01
Chr04	irgsp1_rep	three_prime_UTR	29431012	29431147	.	-	.	Parent=Os04t0582600-01
Chr04	irgsp1_rep	mRNA	29438046	29441912	.	-	.	ID=Os04t0582700-00;Name=Os04t0582700-00;Locus_id=Os04g0582700;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XUD6 (UniProt);TENOR=Os04t0582700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	29441346	29441912	.	-	0	Parent=Os04t0582700-00
Chr04	irgsp1_rep	CDS	29440523	29441057	.	-	0	Parent=Os04t0582700-00
Chr04	irgsp1_rep	CDS	29440278	29440375	.	-	2	Parent=Os04t0582700-00
Chr04	irgsp1_rep	CDS	29439939	29440067	.	-	0	Parent=Os04t0582700-00
Chr04	irgsp1_rep	CDS	29439528	29439815	.	-	0	Parent=Os04t0582700-00
Chr04	irgsp1_rep	CDS	29438046	29438180	.	-	0	Parent=Os04t0582700-00
Chr04	irgsp1_rep	mRNA	29448667	29449352	.	-	.	ID=Os04t0582900-01;Name=Os04t0582900-01;Locus_id=Os04g0582900;Note=Peptidase%2C cysteine peptidase active site domain containing protein.;Transcript_evidence=AK243198 (DDBJ%2C Best hit);ORF_evidence=NP_198519.1 (RefSeq);NIAS_FLcDNA=J100040F01;TENOR=Os04t0582900-01;KEGG=Os04t0582900-01
Chr04	irgsp1_rep	five_prime_UTR	29449351	29449352	.	-	.	Parent=Os04t0582900-01
Chr04	irgsp1_rep	CDS	29449217	29449350	.	-	0	Parent=Os04t0582900-01
Chr04	irgsp1_rep	CDS	29448809	29449073	.	-	1	Parent=Os04t0582900-01
Chr04	irgsp1_rep	three_prime_UTR	29448667	29448808	.	-	.	Parent=Os04t0582900-01
Chr04	irgsp1_rep	mRNA	29454845	29459592	.	-	.	ID=Os04t0583000-01;Name=Os04t0583000-01;Locus_id=Os04g0583000;Oryzabase Gene Symbol Synonym(s)=OsFbox229%2C Os_F0493;Oryzabase Gene Name Synonym(s)=F-box protein 229;Note=Conserved hypothetical protein.;Transcript_evidence=AK068074 (DDBJ%2C Best hit);ORF_evidence=A2XWT1 (UniProt);NIAS_FLcDNA=J013132A21;Oryzabase=17016;TENOR=Os04t0583000-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	29459592	29459592	.	-	.	Parent=Os04t0583000-01
Chr04	irgsp1_rep	CDS	29459066	29459591	.	-	0	Parent=Os04t0583000-01
Chr04	irgsp1_rep	CDS	29458599	29458930	.	-	2	Parent=Os04t0583000-01
Chr04	irgsp1_rep	three_prime_UTR	29454845	29458598	.	-	.	Parent=Os04t0583000-01
Chr04	irgsp1_rep	mRNA	29455859	29458114	.	+	.	ID=Os04t0583101-01;Name=Os04t0583101-01;Locus_id=Os04g0583101;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK065769 (DDBJ%2C Best hit);ORF_evidence=NP_001174064.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013040G18;Expression=AK065769;TENOR=Os04t0583101-01;KEGG=Os04t0583101-01
Chr04	irgsp1_rep	five_prime_UTR	29455859	29455919	.	+	.	Parent=Os04t0583101-01
Chr04	irgsp1_rep	CDS	29455920	29457740	.	+	0	Parent=Os04t0583101-01
Chr04	irgsp1_rep	three_prime_UTR	29457741	29458114	.	+	.	Parent=Os04t0583101-01
Chr04	irgsp1_rep	mRNA	29465920	29467005	.	-	.	ID=Os04t0583200-01;Name=Os04t0583200-01;Locus_id=Os04g0583200;CGSNL Gene Symbol=O3L1;CGSNL Gene Name=OXS3-LIKE 1;Oryzabase Gene Symbol Synonym(s)=OsO3L1;Oryzabase Gene Name Synonym(s)=OXIDATIVE STRESS 3-like 1%2C OXS3-like 1;Note=Conserved hypothetical protein.;Transcript_evidence=AK073181 (DDBJ%2C Best hit);ORF_evidence=A3AWR9 (UniProt);NIAS_FLcDNA=J033001M05;Oryzabase=22444;TENOR=Os04t0583200-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	29466859	29467005	.	-	.	Parent=Os04t0583200-01
Chr04	irgsp1_rep	CDS	29466647	29466858	.	-	0	Parent=Os04t0583200-01
Chr04	irgsp1_rep	CDS	29466118	29466523	.	-	1	Parent=Os04t0583200-01
Chr04	irgsp1_rep	three_prime_UTR	29465920	29466117	.	-	.	Parent=Os04t0583200-01
Chr04	irgsp1_rep	mRNA	29466225	29467027	.	+	.	ID=Os04t0583266-00;Name=Os04t0583266-00;Locus_id=Os04g0583266;Note=Hypothetical protein.;Transcript_evidence=BT019268 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0583266-00;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	29466225	29466225	.	+	.	Parent=Os04t0583266-00
Chr04	irgsp1_rep	CDS	29466226	29466528	.	+	0	Parent=Os04t0583266-00
Chr04	irgsp1_rep	CDS	29466649	29466705	.	+	0	Parent=Os04t0583266-00
Chr04	irgsp1_rep	three_prime_UTR	29466706	29467027	.	+	.	Parent=Os04t0583266-00
Chr04	irgsp1_rep	mRNA	29475788	29476070	.	+	.	ID=Os04t0583332-00;Name=Os04t0583332-00;Locus_id=Os04g0583332;Note=Non-protein coding transcript.;Transcript_evidence=CT834365 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os04t0583332-00
Chr04	irgsp1_rep	exon	29475788	29476070	.	+	.	Parent=Os04t0583332-00
Chr04	irgsp1_rep	mRNA	29485142	29488557	.	+	.	ID=Os04t0583500-01;Name=Os04t0583500-01;Locus_id=Os04g0583500;RAP-DB Gene Symbol Synonym(s)=EXPA10%2C OsEXPA10%2C OsEXP10%2C osaEXPa1.28;RAP-DB Gene Name Synonym(s)=ALPHA-EXPANSIN 10%2C Expansin-A10;CGSNL Gene Symbol=EXPA10;CGSNL Gene Name=ALPHA-EXPANSIN 10;Oryzabase Gene Symbol Synonym(s)=OsEXPA10%2C OsEXP10%2C osaEXPa1.28;Oryzabase Gene Name Synonym(s)=Expansin-A10;Note=Expansin%2C Al-inducible expansin%2C Root cell elongation;Transcript_evidence=AK062225;ORF_evidence=Q7XUD0;GO=Biological Process: plant-type cell wall organization (GO:0009664),Cellular Component: extracellular region (GO:0005576);InterPro=Expansin/Lol pI (IPR007118),Expansin (IPR002963),RlpA-like protein%2C double-psi beta-barrel domain (IPR009009),Expansin/pollen allergen%2C DPBB domain (IPR007112),Expansin%2C cellulose-binding-like domain (IPR007117);NIAS_FLcDNA=001-047-C11;Manual Curation=October 27%2C 2016;Literature_PMID=27302336;Oryzabase=9372;Expression=AK062225;TENOR=Os04t0583500-01;KEGG=Os04t0583500-01
Chr04	irgsp1_rep	five_prime_UTR	29485142	29485262	.	+	.	Parent=Os04t0583500-01
Chr04	irgsp1_rep	CDS	29485263	29485410	.	+	0	Parent=Os04t0583500-01
Chr04	irgsp1_rep	CDS	29485685	29486000	.	+	2	Parent=Os04t0583500-01
Chr04	irgsp1_rep	CDS	29487981	29488290	.	+	1	Parent=Os04t0583500-01
Chr04	irgsp1_rep	three_prime_UTR	29488291	29488557	.	+	.	Parent=Os04t0583500-01
Chr04	irgsp1_rep	mRNA	29485142	29488519	.	+	.	ID=Os04t0583500-02;Name=Os04t0583500-02;Locus_id=Os04g0583500;CGSNL Gene Symbol=EXPA10;CGSNL Gene Name=ALPHA-EXPANSIN 10;Oryzabase Gene Symbol Synonym(s)=OsEXPA10%2C OsEXP10%2C osaEXPa1.28;Oryzabase Gene Name Synonym(s)=Expansin-A10;Note=Similar to Expansin-A10.;Transcript_evidence=AK066414 (DDBJ%2C Best hit);ORF_evidence=Q7XUD0 (UniProt);GO=Biological Process: plant-type cell wall organization (GO:0009664),Cellular Component: extracellular region (GO:0005576);InterPro=Expansin (IPR002963),Expansin/pollen allergen%2C DPBB domain (IPR007112),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);NIAS_FLcDNA=J013067I11;Oryzabase=9372;Expression=AK066414;TENOR=Os04t0583500-02;KEGG=Os04t0583500-02
Chr04	irgsp1_rep	five_prime_UTR	29485142	29485262	.	+	.	Parent=Os04t0583500-02
Chr04	irgsp1_rep	CDS	29485263	29485410	.	+	0	Parent=Os04t0583500-02
Chr04	irgsp1_rep	CDS	29485685	29486046	.	+	2	Parent=Os04t0583500-02
Chr04	irgsp1_rep	three_prime_UTR	29486047	29488519	.	+	.	Parent=Os04t0583500-02
Chr04	irgsp1_rep	mRNA	29485735	29488281	.	-	.	ID=Os04t0583550-00;Name=Os04t0583550-00;Locus_id=Os04g0583550;Note=Non-protein coding transcript.;Transcript_evidence=BT016845 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0583550-00
Chr04	irgsp1_rep	exon	29488044	29488281	.	-	.	Parent=Os04t0583550-00
Chr04	irgsp1_rep	exon	29485735	29486050	.	-	.	Parent=Os04t0583550-00
Chr04	irgsp1_rep	mRNA	29488964	29489557	.	-	.	ID=Os04t0583600-01;Name=Os04t0583600-01;Locus_id=Os04g0583600;Note=Similar to Histone H4.;Transcript_evidence=AK059019 (DDBJ%2C Best hit);ORF_evidence=XP_002310853.1 (RefSeq);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H4 (IPR001951),Histone core (IPR007125),Histone-fold (IPR009072),Histone H4%2C conserved site (IPR019809);NIAS_FLcDNA=001-021-B02;Expression=AK059019;TENOR=Os04t0583600-01;KEGG=Os04t0583600-01
Chr04	irgsp1_rep	five_prime_UTR	29489482	29489557	.	-	.	Parent=Os04t0583600-01
Chr04	irgsp1_rep	CDS	29489170	29489481	.	-	0	Parent=Os04t0583600-01
Chr04	irgsp1_rep	three_prime_UTR	29488964	29489169	.	-	.	Parent=Os04t0583600-01
Chr04	irgsp1_rep	mRNA	29493928	29498951	.	+	.	ID=Os04t0583700-00;Name=Os04t0583700-00;Locus_id=Os04g0583700;Note=Zinc finger%2C FYVE-type domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7F9W1 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C FYVE-type (IPR000306),Regulator of Chromosome condensation%2C RCC1 (IPR000408),Regulator of Chromosome condensation/beta-lactamase-inhibitor protein II (IPR009091),Zinc finger%2C FYVE/PHD-type (IPR011011),Pleckstrin homology-type (IPR011993),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Brevis radix-like domain (IPR013591),Zinc finger%2C FYVE-related (IPR017455);TENOR=Os04t0583700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	29493928	29493975	.	+	0	Parent=Os04t0583700-00
Chr04	irgsp1_rep	CDS	29494325	29494411	.	+	0	Parent=Os04t0583700-00
Chr04	irgsp1_rep	CDS	29494987	29495076	.	+	0	Parent=Os04t0583700-00
Chr04	irgsp1_rep	CDS	29495354	29495548	.	+	0	Parent=Os04t0583700-00
Chr04	irgsp1_rep	CDS	29495863	29497866	.	+	0	Parent=Os04t0583700-00
Chr04	irgsp1_rep	CDS	29498015	29498161	.	+	0	Parent=Os04t0583700-00
Chr04	irgsp1_rep	CDS	29498327	29498730	.	+	0	Parent=Os04t0583700-00
Chr04	irgsp1_rep	CDS	29498822	29498951	.	+	1	Parent=Os04t0583700-00
Chr04	irgsp1_rep	mRNA	29499367	29500598	.	+	.	ID=Os04t0583800-01;Name=Os04t0583800-01;Locus_id=Os04g0583800;Note=RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.;Transcript_evidence=AK241387 (DDBJ%2C Best hit);ORF_evidence=NP_001151732.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J065156G02;TENOR=Os04t0583800-01;KEGG=Os04t0583800-01
Chr04	irgsp1_rep	five_prime_UTR	29499367	29499464	.	+	.	Parent=Os04t0583800-01
Chr04	irgsp1_rep	CDS	29499465	29499681	.	+	0	Parent=Os04t0583800-01
Chr04	irgsp1_rep	CDS	29499839	29499978	.	+	2	Parent=Os04t0583800-01
Chr04	irgsp1_rep	three_prime_UTR	29499979	29500111	.	+	.	Parent=Os04t0583800-01
Chr04	irgsp1_rep	three_prime_UTR	29500248	29500598	.	+	.	Parent=Os04t0583800-01
Chr04	irgsp1_rep	mRNA	29500955	29503774	.	-	.	ID=Os04t0583900-01;Name=Os04t0583900-01;Locus_id=Os04g0583900;RAP-DB Gene Symbol Synonym(s)=OsMYBR1;RAP-DB Gene Name Synonym(s)=MYB-related transcription factor 1;Oryzabase Gene Symbol Synonym(s)=LHY%2C LHY-like_Chr.4%2C OsMYBR1%2C MYBR1%2C OsMYB1R35%2C MYB1R35;Oryzabase Gene Name Synonym(s)=LATE ELONGATED HYPOCOTYL%2C MYB-related transcription factor 1;Note=MYB-related transcription factor%2C Mediation of response to ABA and drought;Transcript_evidence=AK101209;ORF_evidence=Q7XUC8;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeobox-like domain superfamily (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930),Myb domain%2C plants (IPR006447);NIAS_FLcDNA=J033031A06;Manual Curation=November 12%2C 2019;Literature_PMID=28690154;Oryzabase=19098;Expression=AK101209;TENOR=Os04t0583900-01;KEGG=Os04t0583900-01
Chr04	irgsp1_rep	five_prime_UTR	29503546	29503774	.	-	.	Parent=Os04t0583900-01
Chr04	irgsp1_rep	CDS	29503531	29503545	.	-	0	Parent=Os04t0583900-01
Chr04	irgsp1_rep	CDS	29503208	29503336	.	-	0	Parent=Os04t0583900-01
Chr04	irgsp1_rep	CDS	29502998	29503109	.	-	0	Parent=Os04t0583900-01
Chr04	irgsp1_rep	CDS	29502839	29502900	.	-	2	Parent=Os04t0583900-01
Chr04	irgsp1_rep	CDS	29502292	29502657	.	-	0	Parent=Os04t0583900-01
Chr04	irgsp1_rep	CDS	29501347	29502054	.	-	0	Parent=Os04t0583900-01
Chr04	irgsp1_rep	three_prime_UTR	29500955	29501346	.	-	.	Parent=Os04t0583900-01
Chr04	irgsp1_rep	mRNA	29502306	29503069	.	+	.	ID=Os04t0584002-00;Name=Os04t0584002-00;Locus_id=Os04g0584002;Note=Non-protein coding transcript.;Transcript_evidence=EU951957 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0584002-00
Chr04	irgsp1_rep	exon	29502306	29503069	.	+	.	Parent=Os04t0584002-00
Chr04	irgsp1_rep	mRNA	29507653	29508822	.	-	.	ID=Os04t0584100-01;Name=Os04t0584100-01;Locus_id=Os04g0584100;CGSNL Gene Symbol=RLCK158;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 158;Oryzabase Gene Symbol Synonym(s)=OsRLCK158;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 158;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK108779 (DDBJ%2C Best hit);ORF_evidence=NP_196292.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-151-A03;Oryzabase=18861;Expression=AK108779;TENOR=Os04t0584100-01;KEGG=Os04t0584100-01
Chr04	irgsp1_rep	five_prime_UTR	29508821	29508822	.	-	.	Parent=Os04t0584100-01
Chr04	irgsp1_rep	CDS	29507810	29508820	.	-	0	Parent=Os04t0584100-01
Chr04	irgsp1_rep	three_prime_UTR	29507653	29507809	.	-	.	Parent=Os04t0584100-01
Chr04	irgsp1_rep	mRNA	29507838	29509340	.	+	.	ID=Os04t0584201-01;Name=Os04t0584201-01;Locus_id=Os04g0584201;Note=Hypothetical protein.;Transcript_evidence=AK105292 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-116-G08;Expression=AK105292;TENOR=Os04t0584201-01;KEGG=Os04t0584201-01
Chr04	irgsp1_rep	five_prime_UTR	29507838	29508181	.	+	.	Parent=Os04t0584201-01
Chr04	irgsp1_rep	CDS	29508182	29508994	.	+	0	Parent=Os04t0584201-01
Chr04	irgsp1_rep	three_prime_UTR	29508995	29509340	.	+	.	Parent=Os04t0584201-01
Chr04	irgsp1_rep	mRNA	29515049	29518385	.	-	.	ID=Os04t0584300-01;Name=Os04t0584300-01;Locus_id=Os04g0584300;Oryzabase Gene Symbol Synonym(s)=OsPP2C43%2C PP2C43%2C OsPP68;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C43%2C protein phosphatase 2C 43%2C protein phosphatase 68;Note=Similar to Catalytic/ protein phosphatase type 2C.;Transcript_evidence=AK289111 (DDBJ%2C Best hit);ORF_evidence=B6TAL6 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J090096N14;Oryzabase=17917;TENOR=Os04t0584300-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	29518194	29518385	.	-	.	Parent=Os04t0584300-01
Chr04	irgsp1_rep	five_prime_UTR	29517945	29518095	.	-	.	Parent=Os04t0584300-01
Chr04	irgsp1_rep	CDS	29517609	29517944	.	-	0	Parent=Os04t0584300-01
Chr04	irgsp1_rep	three_prime_UTR	29516385	29517608	.	-	.	Parent=Os04t0584300-01
Chr04	irgsp1_rep	three_prime_UTR	29515772	29516008	.	-	.	Parent=Os04t0584300-01
Chr04	irgsp1_rep	three_prime_UTR	29515049	29515684	.	-	.	Parent=Os04t0584300-01
Chr04	irgsp1_rep	mRNA	29522376	29527451	.	+	.	ID=Os04t0584500-01;Name=Os04t0584500-01;Locus_id=Os04g0584500;Oryzabase Gene Symbol Synonym(s)=OsPUB77%2C OsEnS-73;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 77%2C U-box protein 77%2C endosperm-specific gene 73;Note=U box domain domain containing protein.;Transcript_evidence=AK099968 (DDBJ%2C Best hit);ORF_evidence=Q7XND9 (UniProt);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842);InterPro=U box domain (IPR003613),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J013127I09;Oryzabase=17865;TENOR=Os04t0584500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	29522376	29522461	.	+	.	Parent=Os04t0584500-01
Chr04	irgsp1_rep	CDS	29522462	29523778	.	+	0	Parent=Os04t0584500-01
Chr04	irgsp1_rep	CDS	29523883	29523977	.	+	0	Parent=Os04t0584500-01
Chr04	irgsp1_rep	CDS	29524058	29524790	.	+	1	Parent=Os04t0584500-01
Chr04	irgsp1_rep	three_prime_UTR	29524791	29524923	.	+	.	Parent=Os04t0584500-01
Chr04	irgsp1_rep	three_prime_UTR	29526220	29526456	.	+	.	Parent=Os04t0584500-01
Chr04	irgsp1_rep	three_prime_UTR	29526542	29526854	.	+	.	Parent=Os04t0584500-01
Chr04	irgsp1_rep	three_prime_UTR	29526997	29527451	.	+	.	Parent=Os04t0584500-01
Chr04	irgsp1_rep	mRNA	29525996	29527270	.	-	.	ID=Os04t0584550-01;Name=Os04t0584550-01;Locus_id=Os04g0584550;Note=Hypothetical gene.;Transcript_evidence=AK287512 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J053029L21;TENOR=Os04t0584550-01;KEGG=Os04t0584550-01
Chr04	irgsp1_rep	five_prime_UTR	29527044	29527270	.	-	.	Parent=Os04t0584550-01
Chr04	irgsp1_rep	five_prime_UTR	29526352	29526931	.	-	.	Parent=Os04t0584550-01
Chr04	irgsp1_rep	CDS	29526106	29526351	.	-	0	Parent=Os04t0584550-01
Chr04	irgsp1_rep	three_prime_UTR	29525996	29526105	.	-	.	Parent=Os04t0584550-01
Chr04	irgsp1_rep	mRNA	29531283	29535738	.	+	.	ID=Os04t0584600-01;Name=Os04t0584600-01;Locus_id=Os04g0584600;CGSNL Gene Symbol=CDPK13;CGSNL Gene Name=CALCIUM-DEPENDENT PROTEIN KINASE 13;Oryzabase Gene Symbol Synonym(s)=OsCDPK13%2C OsCPK13%2C OsCDPK7%2C OsCPK13-1%2C OsCPK13-2;Oryzabase Gene Name Synonym(s)=calcium dependent protein kinase;Note=Similar to Calcium dependent protein kinase.;Transcript_evidence=AK066495 (DDBJ%2C Best hit);ORF_evidence=NP_001105307.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Calcium-binding EF-hand (IPR002048),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),EF-hand-like domain (IPR011992),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J013074H04;Oryzabase=6111;Expression=AK066495;TENOR=Os04t0584600-01;KEGG=Os04t0584600-01 (EC:2.7.11.17)
Chr04	irgsp1_rep	five_prime_UTR	29531283	29531611	.	+	.	Parent=Os04t0584600-01
Chr04	irgsp1_rep	CDS	29531612	29531761	.	+	0	Parent=Os04t0584600-01
Chr04	irgsp1_rep	CDS	29531867	29532338	.	+	0	Parent=Os04t0584600-01
Chr04	irgsp1_rep	CDS	29532865	29533008	.	+	2	Parent=Os04t0584600-01
Chr04	irgsp1_rep	CDS	29533097	29533249	.	+	2	Parent=Os04t0584600-01
Chr04	irgsp1_rep	CDS	29533395	29533510	.	+	2	Parent=Os04t0584600-01
Chr04	irgsp1_rep	CDS	29533986	29534153	.	+	0	Parent=Os04t0584600-01
Chr04	irgsp1_rep	CDS	29534633	29534857	.	+	0	Parent=Os04t0584600-01
Chr04	irgsp1_rep	CDS	29535278	29535400	.	+	0	Parent=Os04t0584600-01
Chr04	irgsp1_rep	three_prime_UTR	29535401	29535738	.	+	.	Parent=Os04t0584600-01
Chr04	irgsp1_rep	mRNA	29531292	29535678	.	+	.	ID=Os04t0584600-02;Name=Os04t0584600-02;Locus_id=Os04g0584600;RAP-DB Gene Symbol Synonym(s)=CDPK13;RAP-DB Gene Name Synonym(s)=calcium dependent protein kinase 13;CGSNL Gene Symbol=CDPK13;CGSNL Gene Name=CALCIUM-DEPENDENT PROTEIN KINASE 13;Oryzabase Gene Symbol Synonym(s)=OsCDPK13%2C OsCPK13%2C OsCDPK7%2C OsCPK13-1%2C OsCPK13-2;Oryzabase Gene Name Synonym(s)=calcium dependent protein kinase;Note=Group I calcium-dependent protein kinase%2C Cold and salt/drought tolerance%2C Activation of NADPH oxidase (RBOHH) in rice root during aerenchyma formation;Transcript_evidence=AK061881;ORF_evidence=Q9FXQ3;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),EF-hand domain pair (IPR011992),Protein kinase domain (IPR000719),EF-hand domain (IPR002048),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271),EF-Hand 1%2C calcium-binding site (IPR018247);NIAS_FLcDNA=001-041-E12;Manual Curation=April 8%2C 2020;Literature_PMID=28351990,10929125;Oryzabase=6111;Expression=AK061881;TENOR=Os04t0584600-02
Chr04	irgsp1_rep	five_prime_UTR	29531292	29531611	.	+	.	Parent=Os04t0584600-02
Chr04	irgsp1_rep	CDS	29531612	29532338	.	+	0	Parent=Os04t0584600-02
Chr04	irgsp1_rep	CDS	29532865	29533008	.	+	2	Parent=Os04t0584600-02
Chr04	irgsp1_rep	CDS	29533097	29533249	.	+	2	Parent=Os04t0584600-02
Chr04	irgsp1_rep	CDS	29533395	29533510	.	+	2	Parent=Os04t0584600-02
Chr04	irgsp1_rep	CDS	29533986	29534153	.	+	0	Parent=Os04t0584600-02
Chr04	irgsp1_rep	CDS	29534633	29534857	.	+	0	Parent=Os04t0584600-02
Chr04	irgsp1_rep	CDS	29535278	29535400	.	+	0	Parent=Os04t0584600-02
Chr04	irgsp1_rep	three_prime_UTR	29535401	29535678	.	+	.	Parent=Os04t0584600-02
Chr04	irgsp1_rep	mRNA	29531407	29532473	.	+	.	ID=Os04t0584600-03;Name=Os04t0584600-03;Locus_id=Os04g0584600;CGSNL Gene Symbol=CDPK13;CGSNL Gene Name=CALCIUM-DEPENDENT PROTEIN KINASE 13;Oryzabase Gene Symbol Synonym(s)=OsCDPK13%2C OsCPK13%2C OsCDPK7%2C OsCPK13-1%2C OsCPK13-2;Oryzabase Gene Name Synonym(s)=calcium dependent protein kinase;Note=Similar to cDNA clone:001-041-E12%2C full insert sequence.;Transcript_evidence=AK059786 (DDBJ%2C Best hit);ORF_evidence=Q5UKX8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=006-204-D08;Oryzabase=6111;Expression=AK059786;TENOR=Os04t0584600-03;KEGG=Os04t0584600-03 (EC:2.7.11.17)
Chr04	irgsp1_rep	five_prime_UTR	29531407	29531611	.	+	.	Parent=Os04t0584600-03
Chr04	irgsp1_rep	CDS	29531612	29532442	.	+	0	Parent=Os04t0584600-03
Chr04	irgsp1_rep	three_prime_UTR	29532443	29532473	.	+	.	Parent=Os04t0584600-03
Chr04	irgsp1_rep	mRNA	29535821	29536764	.	-	.	ID=Os04t0584700-01;Name=Os04t0584700-01;Locus_id=Os04g0584700;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK108387 (DDBJ%2C Best hit);ORF_evidence=Q7FA49 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=002-142-F01;Oryzabase=20206;Expression=AK108387;TENOR=Os04t0584700-01;KEGG=Os04t0584700-01
Chr04	irgsp1_rep	five_prime_UTR	29536763	29536764	.	-	.	Parent=Os04t0584700-01
Chr04	irgsp1_rep	CDS	29535941	29536762	.	-	0	Parent=Os04t0584700-01
Chr04	irgsp1_rep	three_prime_UTR	29535821	29535940	.	-	.	Parent=Os04t0584700-01
Chr04	irgsp1_rep	mRNA	29535941	29536835	.	+	.	ID=Os04t0584750-00;Name=Os04t0584750-00;Locus_id=Os04g0584750;Note=Hypothetical protein.;Transcript_evidence=BT085496 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0584750-00
Chr04	irgsp1_rep	five_prime_UTR	29535941	29536480	.	+	.	Parent=Os04t0584750-00
Chr04	irgsp1_rep	CDS	29536481	29536702	.	+	0	Parent=Os04t0584750-00
Chr04	irgsp1_rep	three_prime_UTR	29536703	29536835	.	+	.	Parent=Os04t0584750-00
Chr04	irgsp1_rep	mRNA	29538736	29541983	.	+	.	ID=Os04t0584800-01;Name=Os04t0584800-01;Locus_id=Os04g0584800;Note=GTP1/OBG domain containing protein.;Transcript_evidence=AK102568 (DDBJ%2C Best hit);ORF_evidence=B8ATD0 (UniProt);GO=Biological Process: small GTPase mediated signal transduction (GO:0007264),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Alpha/gamma-adaptin-binding protein p34 (IPR019341);NIAS_FLcDNA=J033097L06;Expression=AK102568;TENOR=Os04t0584800-01;KEGG=Os04t0584800-01
Chr04	irgsp1_rep	five_prime_UTR	29538736	29538856	.	+	.	Parent=Os04t0584800-01
Chr04	irgsp1_rep	CDS	29538857	29538944	.	+	0	Parent=Os04t0584800-01
Chr04	irgsp1_rep	CDS	29539338	29539398	.	+	2	Parent=Os04t0584800-01
Chr04	irgsp1_rep	CDS	29539527	29539662	.	+	1	Parent=Os04t0584800-01
Chr04	irgsp1_rep	CDS	29539815	29540142	.	+	0	Parent=Os04t0584800-01
Chr04	irgsp1_rep	CDS	29540923	29541051	.	+	2	Parent=Os04t0584800-01
Chr04	irgsp1_rep	CDS	29541257	29541771	.	+	2	Parent=Os04t0584800-01
Chr04	irgsp1_rep	three_prime_UTR	29541772	29541983	.	+	.	Parent=Os04t0584800-01
Chr04	irgsp1_rep	mRNA	29539996	29541999	.	+	.	ID=Os04t0584800-02;Name=Os04t0584800-02;Locus_id=Os04g0584800;Note=Hypothetical conserved gene.;Transcript_evidence=AK058492 (DDBJ%2C Best hit);ORF_evidence=B8ATD0 (UniProt);InterPro=Alpha/gamma-adaptin-binding protein p34 (IPR019341);NIAS_FLcDNA=001-016-E04;Expression=AK058492;TENOR=Os04t0584800-02;KEGG=Os04t0584800-02
Chr04	irgsp1_rep	five_prime_UTR	29539996	29539997	.	+	.	Parent=Os04t0584800-02
Chr04	irgsp1_rep	CDS	29539998	29540142	.	+	0	Parent=Os04t0584800-02
Chr04	irgsp1_rep	CDS	29540923	29541051	.	+	2	Parent=Os04t0584800-02
Chr04	irgsp1_rep	CDS	29541257	29541771	.	+	2	Parent=Os04t0584800-02
Chr04	irgsp1_rep	three_prime_UTR	29541772	29541999	.	+	.	Parent=Os04t0584800-02
Chr04	irgsp1_rep	mRNA	29542123	29544700	.	-	.	ID=Os04t0584900-01;Name=Os04t0584900-01;Locus_id=Os04g0584900;Note=Conserved hypothetical protein.;Transcript_evidence=AK102928 (DDBJ%2C Best hit);ORF_evidence=A2XWU9 (UniProt);NIAS_FLcDNA=J033114E24;Expression=AK102928;TENOR=Os04t0584900-01;KEGG=Os04t0584900-01
Chr04	irgsp1_rep	five_prime_UTR	29544590	29544700	.	-	.	Parent=Os04t0584900-01
Chr04	irgsp1_rep	CDS	29544383	29544589	.	-	0	Parent=Os04t0584900-01
Chr04	irgsp1_rep	CDS	29543731	29543897	.	-	0	Parent=Os04t0584900-01
Chr04	irgsp1_rep	CDS	29542720	29543107	.	-	1	Parent=Os04t0584900-01
Chr04	irgsp1_rep	CDS	29542367	29542564	.	-	0	Parent=Os04t0584900-01
Chr04	irgsp1_rep	three_prime_UTR	29542123	29542366	.	-	.	Parent=Os04t0584900-01
Chr04	irgsp1_rep	mRNA	29542103	29542766	.	-	.	ID=Os04t0584900-02;Name=Os04t0584900-02;Locus_id=Os04g0584900;Note=Hypothetical conserved gene.;Transcript_evidence=AK058633 (DDBJ%2C Best hit);ORF_evidence=A2XWU9 (UniProt);NIAS_FLcDNA=001-018-D01;Expression=AK058633;TENOR=Os04t0584900-02;KEGG=Os04t0584900-02
Chr04	irgsp1_rep	five_prime_UTR	29542765	29542766	.	-	.	Parent=Os04t0584900-02
Chr04	irgsp1_rep	CDS	29542720	29542764	.	-	0	Parent=Os04t0584900-02
Chr04	irgsp1_rep	CDS	29542367	29542564	.	-	0	Parent=Os04t0584900-02
Chr04	irgsp1_rep	three_prime_UTR	29542103	29542366	.	-	.	Parent=Os04t0584900-02
Chr04	irgsp1_rep	mRNA	29552142	29553107	.	-	.	ID=Os04t0585000-01;Name=Os04t0585000-01;Locus_id=Os04g0585000;Note=Similar to RING-H2 finger protein ATL1R.;Transcript_evidence=AK106934 (DDBJ%2C Best hit);ORF_evidence=NP_001150572.1 (RefSeq);NIAS_FLcDNA=002-119-C06;Expression=AK106934;TENOR=Os04t0585000-01;KEGG=Os04t0585000-01
Chr04	irgsp1_rep	five_prime_UTR	29552998	29553107	.	-	.	Parent=Os04t0585000-01
Chr04	irgsp1_rep	CDS	29552739	29552997	.	-	0	Parent=Os04t0585000-01
Chr04	irgsp1_rep	CDS	29552410	29552465	.	-	2	Parent=Os04t0585000-01
Chr04	irgsp1_rep	three_prime_UTR	29552142	29552409	.	-	.	Parent=Os04t0585000-01
Chr04	irgsp1_rep	mRNA	29552395	29552984	.	+	.	ID=Os04t0585050-00;Name=Os04t0585050-00;Locus_id=Os04g0585050;Note=Conserved hypothetical protein.;Transcript_evidence=EU972599 (DDBJ);ORF_evidence=A2XWV0 (UniProt);TENOR=Os04t0585050-00
Chr04	irgsp1_rep	CDS	29552395	29552970	.	+	0	Parent=Os04t0585050-00
Chr04	irgsp1_rep	three_prime_UTR	29552971	29552984	.	+	.	Parent=Os04t0585050-00
Chr04	irgsp1_rep	mRNA	29556896	29563246	.	-	.	ID=Os04t0585100-01;Name=Os04t0585100-01;Locus_id=Os04g0585100;Note=Zinc finger%2C DHHC-type domain containing protein.;Transcript_evidence=AK105286 (DDBJ%2C Best hit);ORF_evidence=B8ATD2 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C DHHC-type%2C palmitoyltransferase (IPR001594);NIAS_FLcDNA=001-116-E08;Expression=AK105286;TENOR=Os04t0585100-01;KEGG=Os04t0585100-01
Chr04	irgsp1_rep	five_prime_UTR	29563081	29563246	.	-	.	Parent=Os04t0585100-01
Chr04	irgsp1_rep	CDS	29563036	29563080	.	-	0	Parent=Os04t0585100-01
Chr04	irgsp1_rep	CDS	29561095	29561208	.	-	0	Parent=Os04t0585100-01
Chr04	irgsp1_rep	CDS	29560907	29561009	.	-	0	Parent=Os04t0585100-01
Chr04	irgsp1_rep	CDS	29560615	29560814	.	-	2	Parent=Os04t0585100-01
Chr04	irgsp1_rep	CDS	29559567	29559635	.	-	0	Parent=Os04t0585100-01
Chr04	irgsp1_rep	CDS	29559385	29559456	.	-	0	Parent=Os04t0585100-01
Chr04	irgsp1_rep	CDS	29559106	29559234	.	-	0	Parent=Os04t0585100-01
Chr04	irgsp1_rep	CDS	29558496	29558576	.	-	0	Parent=Os04t0585100-01
Chr04	irgsp1_rep	CDS	29558212	29558403	.	-	0	Parent=Os04t0585100-01
Chr04	irgsp1_rep	CDS	29557048	29557893	.	-	0	Parent=Os04t0585100-01
Chr04	irgsp1_rep	three_prime_UTR	29556896	29557047	.	-	.	Parent=Os04t0585100-01
Chr04	irgsp1_rep	mRNA	29557703	29561214	.	+	.	ID=Os04t0585150-00;Name=Os04t0585150-00;Locus_id=Os04g0585150;Note=Non-protein coding transcript.;Transcript_evidence=tplb0061k11 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os04t0585150-00
Chr04	irgsp1_rep	exon	29557703	29557875	.	+	.	Parent=Os04t0585150-00
Chr04	irgsp1_rep	exon	29558190	29558413	.	+	.	Parent=Os04t0585150-00
Chr04	irgsp1_rep	exon	29559295	29559616	.	+	.	Parent=Os04t0585150-00
Chr04	irgsp1_rep	exon	29560594	29560996	.	+	.	Parent=Os04t0585150-00
Chr04	irgsp1_rep	exon	29561083	29561214	.	+	.	Parent=Os04t0585150-00
Chr04	irgsp1_rep	mRNA	29565754	29570387	.	-	.	ID=Os04t0585200-01;Name=Os04t0585200-01;Locus_id=Os04g0585200;CGSNL Gene Symbol=GLR3.1;CGSNL Gene Name=GLUTAMATE RECEPTOR 3.1;Oryzabase Gene Symbol Synonym(s)=OsGLR3.2%2C GLR3.2%2C OsGLR3.1;Oryzabase Gene Name Synonym(s)=Glutamate receptor 3.1%2C Ligand-gated ion channel 3.1%2C Glutamate receptor homolog 3.2%2C GLUTAMATE RECEPTOR-LIKE 3.1;Note=Similar to Glutamate receptor.;Transcript_evidence=AK099753 (DDBJ%2C Best hit);ORF_evidence=Q01K65 (UniProt);InterPro=Extracellular ligand-binding receptor (IPR001828);NIAS_FLcDNA=J013092N19;Oryzabase=6044;TENOR=Os04t0585200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	29570177	29570387	.	-	.	Parent=Os04t0585200-01
Chr04	irgsp1_rep	five_prime_UTR	29569681	29569785	.	-	.	Parent=Os04t0585200-01
Chr04	irgsp1_rep	CDS	29569422	29569680	.	-	0	Parent=Os04t0585200-01
Chr04	irgsp1_rep	CDS	29568153	29569321	.	-	2	Parent=Os04t0585200-01
Chr04	irgsp1_rep	CDS	29567975	29568049	.	-	0	Parent=Os04t0585200-01
Chr04	irgsp1_rep	three_prime_UTR	29567970	29567974	.	-	.	Parent=Os04t0585200-01
Chr04	irgsp1_rep	three_prime_UTR	29567615	29567892	.	-	.	Parent=Os04t0585200-01
Chr04	irgsp1_rep	three_prime_UTR	29567437	29567468	.	-	.	Parent=Os04t0585200-01
Chr04	irgsp1_rep	three_prime_UTR	29566931	29567337	.	-	.	Parent=Os04t0585200-01
Chr04	irgsp1_rep	three_prime_UTR	29565754	29566432	.	-	.	Parent=Os04t0585200-01
Chr04	irgsp1_rep	mRNA	29567961	29570115	.	-	.	ID=Os04t0585200-02;Name=Os04t0585200-02;Locus_id=Os04g0585200;CGSNL Gene Symbol=GLR3.1;CGSNL Gene Name=GLUTAMATE RECEPTOR 3.1;Oryzabase Gene Symbol Synonym(s)=OsGLR3.2%2C GLR3.2%2C OsGLR3.1;Oryzabase Gene Name Synonym(s)=Glutamate receptor 3.1%2C Ligand-gated ion channel 3.1%2C Glutamate receptor homolog 3.2%2C GLUTAMATE RECEPTOR-LIKE 3.1;Note=Similar to Glutamate receptor 3.1.;Transcript_evidence=AK073062 (DDBJ%2C Best hit);ORF_evidence=A3AWT8 (UniProt);InterPro=Extracellular ligand-binding receptor (IPR001828);NIAS_FLcDNA=J033021I08;Oryzabase=6044;Expression=AK073062;TENOR=Os04t0585200-02;KEGG=Os04t0585200-02
Chr04	irgsp1_rep	five_prime_UTR	29569681	29570115	.	-	.	Parent=Os04t0585200-02
Chr04	irgsp1_rep	CDS	29569422	29569680	.	-	0	Parent=Os04t0585200-02
Chr04	irgsp1_rep	CDS	29567961	29569321	.	-	2	Parent=Os04t0585200-02
Chr04	irgsp1_rep	mRNA	29571617	29577658	.	-	.	ID=Os04t0585300-01;Name=Os04t0585300-01;Locus_id=Os04g0585300;Note=Similar to H0307D04.2 protein.;Transcript_evidence=AK103548 (DDBJ%2C Best hit);ORF_evidence=Q01K64 (UniProt);InterPro=CCAAT-binding factor (IPR005612);NIAS_FLcDNA=J033132E24;TENOR=Os04t0585300-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	29577576	29577658	.	-	.	Parent=Os04t0585300-01
Chr04	irgsp1_rep	CDS	29577195	29577575	.	-	0	Parent=Os04t0585300-01
Chr04	irgsp1_rep	CDS	29577010	29577102	.	-	0	Parent=Os04t0585300-01
Chr04	irgsp1_rep	CDS	29576784	29576857	.	-	0	Parent=Os04t0585300-01
Chr04	irgsp1_rep	CDS	29576560	29576618	.	-	1	Parent=Os04t0585300-01
Chr04	irgsp1_rep	CDS	29576444	29576492	.	-	2	Parent=Os04t0585300-01
Chr04	irgsp1_rep	CDS	29575823	29575917	.	-	1	Parent=Os04t0585300-01
Chr04	irgsp1_rep	CDS	29574984	29575018	.	-	2	Parent=Os04t0585300-01
Chr04	irgsp1_rep	CDS	29574814	29574915	.	-	0	Parent=Os04t0585300-01
Chr04	irgsp1_rep	CDS	29574337	29574395	.	-	0	Parent=Os04t0585300-01
Chr04	irgsp1_rep	CDS	29574082	29574256	.	-	1	Parent=Os04t0585300-01
Chr04	irgsp1_rep	CDS	29573117	29573290	.	-	0	Parent=Os04t0585300-01
Chr04	irgsp1_rep	CDS	29572818	29572929	.	-	0	Parent=Os04t0585300-01
Chr04	irgsp1_rep	CDS	29572642	29572699	.	-	2	Parent=Os04t0585300-01
Chr04	irgsp1_rep	CDS	29572443	29572548	.	-	1	Parent=Os04t0585300-01
Chr04	irgsp1_rep	CDS	29571905	29572105	.	-	0	Parent=Os04t0585300-01
Chr04	irgsp1_rep	three_prime_UTR	29571617	29571904	.	-	.	Parent=Os04t0585300-01
Chr04	irgsp1_rep	mRNA	29577956	29581134	.	-	.	ID=Os04t0585400-01;Name=Os04t0585400-01;Locus_id=Os04g0585400;Note=Similar to H0307D04.3 protein.;Transcript_evidence=AK106629 (DDBJ%2C Best hit);ORF_evidence=Q01K63 (UniProt);InterPro=Nucleotide-diphospho-sugar transferase (IPR005069);NIAS_FLcDNA=002-113-C11;TENOR=Os04t0585400-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	29581010	29581134	.	-	.	Parent=Os04t0585400-01
Chr04	irgsp1_rep	CDS	29580791	29581009	.	-	0	Parent=Os04t0585400-01
Chr04	irgsp1_rep	CDS	29579375	29579740	.	-	0	Parent=Os04t0585400-01
Chr04	irgsp1_rep	CDS	29578669	29579150	.	-	0	Parent=Os04t0585400-01
Chr04	irgsp1_rep	CDS	29578522	29578543	.	-	1	Parent=Os04t0585400-01
Chr04	irgsp1_rep	three_prime_UTR	29577956	29578521	.	-	.	Parent=Os04t0585400-01
Chr04	irgsp1_rep	mRNA	29583842	29585662	.	-	.	ID=Os04t0585600-01;Name=Os04t0585600-01;Locus_id=Os04g0585600;Note=Similar to H0307D04.4 protein.;Transcript_evidence=AK106073 (DDBJ%2C Best hit);ORF_evidence=Q01K62 (UniProt);NIAS_FLcDNA=001-206-H09;Expression=AK106073;TENOR=Os04t0585600-01;KEGG=Os04t0585600-01
Chr04	irgsp1_rep	five_prime_UTR	29585611	29585662	.	-	.	Parent=Os04t0585600-01
Chr04	irgsp1_rep	CDS	29585299	29585610	.	-	0	Parent=Os04t0585600-01
Chr04	irgsp1_rep	CDS	29585127	29585206	.	-	0	Parent=Os04t0585600-01
Chr04	irgsp1_rep	CDS	29584574	29584649	.	-	1	Parent=Os04t0585600-01
Chr04	irgsp1_rep	CDS	29584376	29584504	.	-	0	Parent=Os04t0585600-01
Chr04	irgsp1_rep	CDS	29584166	29584291	.	-	0	Parent=Os04t0585600-01
Chr04	irgsp1_rep	three_prime_UTR	29583842	29584165	.	-	.	Parent=Os04t0585600-01
Chr04	irgsp1_rep	mRNA	29588252	29590515	.	-	.	ID=Os04t0585700-01;Name=Os04t0585700-01;Locus_id=Os04g0585700;Note=Protein of unknown function DUF581 family protein.;Transcript_evidence=AK061584 (DDBJ%2C Best hit);ORF_evidence=Q01K61 (UniProt);InterPro=Protein of unknown function DUF581 (IPR007650);NIAS_FLcDNA=006-312-B04;TENOR=Os04t0585700-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	29590319	29590515	.	-	.	Parent=Os04t0585700-01
Chr04	irgsp1_rep	CDS	29590050	29590318	.	-	0	Parent=Os04t0585700-01
Chr04	irgsp1_rep	CDS	29588680	29588863	.	-	1	Parent=Os04t0585700-01
Chr04	irgsp1_rep	three_prime_UTR	29588252	29588679	.	-	.	Parent=Os04t0585700-01
Chr04	irgsp1_rep	mRNA	29606210	29607174	.	-	.	ID=Os04t0585900-01;Name=Os04t0585900-01;Locus_id=Os04g0585900;Note=Protein of unknown function DUF581 family protein.;Transcript_evidence=AK064763 (DDBJ%2C Best hit);ORF_evidence=Q01K60 (UniProt);InterPro=Protein of unknown function DUF581 (IPR007650);NIAS_FLcDNA=002-120-H07;Expression=AK064763;TENOR=Os04t0585900-01;KEGG=Os04t0585900-01
Chr04	irgsp1_rep	five_prime_UTR	29607038	29607174	.	-	.	Parent=Os04t0585900-01
Chr04	irgsp1_rep	CDS	29606904	29607037	.	-	0	Parent=Os04t0585900-01
Chr04	irgsp1_rep	CDS	29606585	29606810	.	-	1	Parent=Os04t0585900-01
Chr04	irgsp1_rep	three_prime_UTR	29606210	29606584	.	-	.	Parent=Os04t0585900-01
Chr04	irgsp1_rep	mRNA	29605677	29606953	.	-	.	ID=Os04t0585900-02;Name=Os04t0585900-02;Locus_id=Os04g0585900;Note=Protein of unknown function DUF581 family protein.;Transcript_evidence=AK070920 (DDBJ%2C Best hit);ORF_evidence=GeneMark;InterPro=Protein of unknown function DUF581 (IPR007650);NIAS_FLcDNA=J023072B01;Expression=AK070920;TENOR=Os04t0585900-02;KEGG=Os04t0585900-02
Chr04	irgsp1_rep	CDS	29606904	29606953	.	-	0	Parent=Os04t0585900-02
Chr04	irgsp1_rep	CDS	29606585	29606810	.	-	1	Parent=Os04t0585900-02
Chr04	irgsp1_rep	three_prime_UTR	29606463	29606584	.	-	.	Parent=Os04t0585900-02
Chr04	irgsp1_rep	three_prime_UTR	29605677	29606046	.	-	.	Parent=Os04t0585900-02
Chr04	irgsp1_rep	mRNA	29610157	29611144	.	-	.	ID=Os04t0586000-00;Name=Os04t0586000-00;Locus_id=Os04g0586000;Note=Protein of unknown function DUF581 family protein.;Transcript_evidence=FP093857 (DDBJ);ORF_evidence=Q01K59 (UniProt);InterPro=Protein of unknown function DUF581 (IPR007650);Oryzabase=23125;TENOR=Os04t0586000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	29611063	29611144	.	-	.	Parent=Os04t0586000-00
Chr04	irgsp1_rep	CDS	29610836	29611062	.	-	0	Parent=Os04t0586000-00
Chr04	irgsp1_rep	CDS	29610581	29610737	.	-	1	Parent=Os04t0586000-00
Chr04	irgsp1_rep	three_prime_UTR	29610157	29610580	.	-	.	Parent=Os04t0586000-00
Chr04	irgsp1_rep	mRNA	29620862	29621588	.	-	.	ID=Os04t0586100-01;Name=Os04t0586100-01;Locus_id=Os04g0586100;Note=Protein of unknown function DUF581 family protein.;Transcript_evidence=AK063206 (DDBJ%2C Best hit);ORF_evidence=Q01K54 (UniProt);InterPro=Protein of unknown function DUF581 (IPR007650);NIAS_FLcDNA=001-112-D01;Expression=AK063206;TENOR=Os04t0586100-01;KEGG=Os04t0586100-01
Chr04	irgsp1_rep	five_prime_UTR	29621501	29621588	.	-	.	Parent=Os04t0586100-01
Chr04	irgsp1_rep	CDS	29621207	29621500	.	-	0	Parent=Os04t0586100-01
Chr04	irgsp1_rep	three_prime_UTR	29620862	29621206	.	-	.	Parent=Os04t0586100-01
Chr04	irgsp1_rep	mRNA	29624421	29625055	.	-	.	ID=Os04t0586200-01;Name=Os04t0586200-01;Locus_id=Os04g0586200;Note=Similar to H0307D04.13 protein.;Transcript_evidence=AK120315 (DDBJ%2C Best hit);ORF_evidence=Q01K53 (UniProt);InterPro=Protein of unknown function DUF581 (IPR007650);NIAS_FLcDNA=J013055L24;TENOR=Os04t0586200-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	29625055	29625055	.	-	.	Parent=Os04t0586200-01
Chr04	irgsp1_rep	CDS	29624740	29625054	.	-	0	Parent=Os04t0586200-01
Chr04	irgsp1_rep	three_prime_UTR	29624421	29624739	.	-	.	Parent=Os04t0586200-01
Chr04	irgsp1_rep	mRNA	29629282	29632768	.	+	.	ID=Os04t0586400-00;Name=Os04t0586400-00;Locus_id=Os04g0586400;Note=Hypothetical gene.;Transcript_evidence=CT836476 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os04t0586400-00;KEGG=Os04t0586400-00
Chr04	irgsp1_rep	five_prime_UTR	29629282	29629310	.	+	.	Parent=Os04t0586400-00
Chr04	irgsp1_rep	CDS	29629311	29629562	.	+	0	Parent=Os04t0586400-00
Chr04	irgsp1_rep	three_prime_UTR	29629563	29629690	.	+	.	Parent=Os04t0586400-00
Chr04	irgsp1_rep	three_prime_UTR	29630178	29630286	.	+	.	Parent=Os04t0586400-00
Chr04	irgsp1_rep	three_prime_UTR	29630490	29630667	.	+	.	Parent=Os04t0586400-00
Chr04	irgsp1_rep	three_prime_UTR	29631364	29631506	.	+	.	Parent=Os04t0586400-00
Chr04	irgsp1_rep	three_prime_UTR	29632336	29632363	.	+	.	Parent=Os04t0586400-00
Chr04	irgsp1_rep	three_prime_UTR	29632397	29632768	.	+	.	Parent=Os04t0586400-00
Chr04	irgsp1_rep	mRNA	29636178	29637984	.	+	.	ID=Os04t0586500-01;Name=Os04t0586500-01;Locus_id=Os04g0586500;Note=Malectin-like carbohydrate-binding domain domain containing protein.;Transcript_evidence=AK106447 (DDBJ%2C Best hit);ORF_evidence=A2XWW4 (UniProt);InterPro=Malectin-like carbohydrate-binding domain (IPR024788);NIAS_FLcDNA=002-103-E04;Expression=AK106447;TENOR=Os04t0586500-01;KEGG=Os04t0586500-01
Chr04	irgsp1_rep	five_prime_UTR	29636178	29636289	.	+	.	Parent=Os04t0586500-01
Chr04	irgsp1_rep	CDS	29636290	29637831	.	+	0	Parent=Os04t0586500-01
Chr04	irgsp1_rep	three_prime_UTR	29637832	29637984	.	+	.	Parent=Os04t0586500-01
Chr04	irgsp1_rep	mRNA	29640577	29642134	.	-	.	ID=Os04t0586600-01;Name=Os04t0586600-01;Locus_id=Os04g0586600;Note=Hypothetical protein.;Transcript_evidence=AK110923 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-173-D04;Expression=AK110923;TENOR=Os04t0586600-01;KEGG=Os04t0586600-01
Chr04	irgsp1_rep	five_prime_UTR	29641550	29642134	.	-	.	Parent=Os04t0586600-01
Chr04	irgsp1_rep	CDS	29640968	29641549	.	-	0	Parent=Os04t0586600-01
Chr04	irgsp1_rep	three_prime_UTR	29640577	29640967	.	-	.	Parent=Os04t0586600-01
Chr04	irgsp1_rep	mRNA	29640960	29642380	.	+	.	ID=Os04t0586700-01;Name=Os04t0586700-01;Locus_id=Os04g0586700;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK063488 (DDBJ%2C Best hit);ORF_evidence=NP_001151920.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=001-116-C07;Expression=AK063488;TENOR=Os04t0586700-01;KEGG=Os04t0586700-01
Chr04	irgsp1_rep	five_prime_UTR	29640960	29641001	.	+	.	Parent=Os04t0586700-01
Chr04	irgsp1_rep	CDS	29641002	29642081	.	+	0	Parent=Os04t0586700-01
Chr04	irgsp1_rep	three_prime_UTR	29642082	29642380	.	+	.	Parent=Os04t0586700-01
Chr04	irgsp1_rep	mRNA	29651702	29652171	.	-	.	ID=Os04t0586850-00;Name=Os04t0586850-00;Locus_id=Os04g0586850;Note=Hypothetical conserved gene.;Transcript_evidence=CU405858 (DDBJ%2C Secondary hit);ORF_evidence=NP_001046038.1 (RefSeq);TENOR=Os04t0586850-00;KEGG=Os04t0586850-00
Chr04	irgsp1_rep	five_prime_UTR	29652051	29652171	.	-	.	Parent=Os04t0586850-00
Chr04	irgsp1_rep	CDS	29651733	29652050	.	-	0	Parent=Os04t0586850-00
Chr04	irgsp1_rep	three_prime_UTR	29651702	29651732	.	-	.	Parent=Os04t0586850-00
Chr04	irgsp1_rep	mRNA	29654080	29654740	.	+	.	ID=Os04t0587100-01;Name=Os04t0587100-01;Locus_id=Os04g0587100;Note=Pectinesterase inhibitor domain containing protein.;Transcript_evidence=AK242841 (DDBJ%2C Best hit);ORF_evidence=NP_001053688.1 (RefSeq);GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);NIAS_FLcDNA=J090070F17;TENOR=Os04t0587100-01;KEGG=Os04t0587100-01
Chr04	irgsp1_rep	five_prime_UTR	29654080	29654091	.	+	.	Parent=Os04t0587100-01
Chr04	irgsp1_rep	CDS	29654092	29654658	.	+	0	Parent=Os04t0587100-01
Chr04	irgsp1_rep	three_prime_UTR	29654659	29654740	.	+	.	Parent=Os04t0587100-01
Chr04	irgsp1_rep	mRNA	29656077	29656696	.	+	.	ID=Os04t0587200-00;Name=Os04t0587200-00;Locus_id=Os04g0587200;Note=Similar to invertase inhibitor.;Transcript_evidence=AK375354 (DDBJ);ORF_evidence=NP_001151081.1 (RefSeq);GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);TENOR=Os04t0587200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	29656077	29656082	.	+	.	Parent=Os04t0587200-00
Chr04	irgsp1_rep	CDS	29656083	29656652	.	+	0	Parent=Os04t0587200-00
Chr04	irgsp1_rep	three_prime_UTR	29656653	29656696	.	+	.	Parent=Os04t0587200-00
Chr04	irgsp1_rep	mRNA	29658700	29660577	.	+	.	ID=Os04t0587300-01;Name=Os04t0587300-01;Locus_id=Os04g0587300;CGSNL Gene Symbol=PUP10;CGSNL Gene Name=PURINE PERMEASE 10;Oryzabase Gene Symbol Synonym(s)=OsPUP10;Oryzabase Gene Name Synonym(s)=purine permease 10%2C PUP-type cytokinin transporter 10;Note=Similar to Purine permease-like protein.;Transcript_evidence=AK119483 (DDBJ%2C Best hit);ORF_evidence=B7EL40 (UniProt);InterPro=Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=001-134-C03;Oryzabase=15010;Expression=AK119483;TENOR=Os04t0587300-01;KEGG=Os04t0587300-01
Chr04	irgsp1_rep	five_prime_UTR	29658700	29658734	.	+	.	Parent=Os04t0587300-01
Chr04	irgsp1_rep	CDS	29658735	29658810	.	+	0	Parent=Os04t0587300-01
Chr04	irgsp1_rep	CDS	29659203	29660257	.	+	2	Parent=Os04t0587300-01
Chr04	irgsp1_rep	three_prime_UTR	29660258	29660577	.	+	.	Parent=Os04t0587300-01
Chr04	irgsp1_rep	mRNA	29660983	29662459	.	+	.	ID=Os04t0587400-01;Name=Os04t0587400-01;Locus_id=Os04g0587400;CGSNL Gene Symbol=PUP6;CGSNL Gene Name=PURINE PERMEASE 6;Oryzabase Gene Symbol Synonym(s)=OsPUP6;Oryzabase Gene Name Synonym(s)=purine permease 6%2C PUP-type cytokinin transporter 6;Note=Protein of unknown function DUF250 domain containing protein.;Transcript_evidence=AK071680 (DDBJ%2C Best hit);ORF_evidence=B8ATD6 (UniProt);InterPro=Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=J023108B05;Oryzabase=15007;Expression=AK071680;TENOR=Os04t0587400-01;KEGG=Os04t0587400-01
Chr04	irgsp1_rep	five_prime_UTR	29660983	29661009	.	+	.	Parent=Os04t0587400-01
Chr04	irgsp1_rep	CDS	29661010	29661097	.	+	0	Parent=Os04t0587400-01
Chr04	irgsp1_rep	CDS	29661215	29662353	.	+	2	Parent=Os04t0587400-01
Chr04	irgsp1_rep	three_prime_UTR	29662354	29662459	.	+	.	Parent=Os04t0587400-01
Chr04	irgsp1_rep	mRNA	29666137	29670469	.	+	.	ID=Os04t0587451-00;Name=Os04t0587451-00;Locus_id=Os04g0587451;Note=Non-protein coding transcript.;Transcript_evidence=CT835072 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os04t0587451-00
Chr04	irgsp1_rep	exon	29666137	29666749	.	+	.	Parent=Os04t0587451-00
Chr04	irgsp1_rep	exon	29670246	29670469	.	+	.	Parent=Os04t0587451-00
Chr04	irgsp1_rep	mRNA	29669835	29672579	.	+	.	ID=Os04t0587500-01;Name=Os04t0587500-01;Locus_id=Os04g0587500;CGSNL Gene Symbol=PUP13;CGSNL Gene Name=PURINE PERMEASE 13;Oryzabase Gene Symbol Synonym(s)=OsPUP13;Oryzabase Gene Name Synonym(s)=purine permease 13%2C PUP-type cytokinin transporter 13;Note=Domain of unknown function DUF250 domain containing protein.;Transcript_evidence=AK060241 (DDBJ%2C Best hit);ORF_evidence=Q7XN26 (UniProt);InterPro=Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=001-003-F02;Oryzabase=15013;TENOR=Os04t0587500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	29669835	29670103	.	+	.	Parent=Os04t0587500-01
Chr04	irgsp1_rep	CDS	29670104	29670113	.	+	0	Parent=Os04t0587500-01
Chr04	irgsp1_rep	CDS	29671259	29672385	.	+	2	Parent=Os04t0587500-01
Chr04	irgsp1_rep	three_prime_UTR	29672386	29672579	.	+	.	Parent=Os04t0587500-01
Chr04	irgsp1_rep	mRNA	29716461	29717505	.	+	.	ID=Os04t0587751-00;Name=Os04t0587751-00;Locus_id=Os04g0587751;Note=Hypothetical protein.;Transcript_evidence=tplb0058j15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0587751-00
Chr04	irgsp1_rep	five_prime_UTR	29716461	29716787	.	+	.	Parent=Os04t0587751-00
Chr04	irgsp1_rep	five_prime_UTR	29716860	29716903	.	+	.	Parent=Os04t0587751-00
Chr04	irgsp1_rep	CDS	29716904	29717326	.	+	0	Parent=Os04t0587751-00
Chr04	irgsp1_rep	three_prime_UTR	29717327	29717505	.	+	.	Parent=Os04t0587751-00
Chr04	irgsp1_rep	mRNA	29716970	29717428	.	-	.	ID=Os04t0588000-00;Name=Os04t0588000-00;Locus_id=Os04g0588000;Note=Similar to transposon protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001151177.1 (RefSeq);InterPro=Uncharacterised protein family UPF0503 (IPR008004);TENOR=Os04t0588000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	29716970	29717428	.	-	0	Parent=Os04t0588000-00
Chr04	irgsp1_rep	mRNA	29719544	29729743	.	+	.	ID=Os04t0588200-00;Name=Os04t0588200-00;Locus_id=Os04g0588200;Note=Similar to emb2411 (embryo defective 2411)%3B ATP binding / ATP-dependent DNA helicase/ DNA binding.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_172361.1 (RefSeq);GO=Biological Process: DNA replication (GO:0006260),Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP-dependent DNA helicase activity (GO:0004003),Molecular Function: ATP binding (GO:0005524);InterPro=DNA replication factor Dna2 (IPR014808);TENOR=Os04t0588200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	29719544	29719630	.	+	0	Parent=Os04t0588200-00
Chr04	irgsp1_rep	CDS	29719937	29720071	.	+	0	Parent=Os04t0588200-00
Chr04	irgsp1_rep	CDS	29720237	29720416	.	+	0	Parent=Os04t0588200-00
Chr04	irgsp1_rep	CDS	29720507	29720575	.	+	0	Parent=Os04t0588200-00
Chr04	irgsp1_rep	CDS	29720692	29720892	.	+	0	Parent=Os04t0588200-00
Chr04	irgsp1_rep	CDS	29720991	29721044	.	+	0	Parent=Os04t0588200-00
Chr04	irgsp1_rep	CDS	29721129	29721190	.	+	0	Parent=Os04t0588200-00
Chr04	irgsp1_rep	CDS	29721292	29721424	.	+	1	Parent=Os04t0588200-00
Chr04	irgsp1_rep	CDS	29721593	29721703	.	+	0	Parent=Os04t0588200-00
Chr04	irgsp1_rep	CDS	29721812	29721908	.	+	0	Parent=Os04t0588200-00
Chr04	irgsp1_rep	CDS	29722442	29722518	.	+	2	Parent=Os04t0588200-00
Chr04	irgsp1_rep	CDS	29722933	29722998	.	+	0	Parent=Os04t0588200-00
Chr04	irgsp1_rep	CDS	29723235	29723387	.	+	0	Parent=Os04t0588200-00
Chr04	irgsp1_rep	CDS	29724196	29724251	.	+	0	Parent=Os04t0588200-00
Chr04	irgsp1_rep	CDS	29724328	29724388	.	+	1	Parent=Os04t0588200-00
Chr04	irgsp1_rep	CDS	29724460	29724570	.	+	0	Parent=Os04t0588200-00
Chr04	irgsp1_rep	CDS	29724814	29724948	.	+	0	Parent=Os04t0588200-00
Chr04	irgsp1_rep	CDS	29725021	29725251	.	+	0	Parent=Os04t0588200-00
Chr04	irgsp1_rep	CDS	29725805	29725879	.	+	0	Parent=Os04t0588200-00
Chr04	irgsp1_rep	CDS	29725965	29726086	.	+	0	Parent=Os04t0588200-00
Chr04	irgsp1_rep	CDS	29726185	29726257	.	+	1	Parent=Os04t0588200-00
Chr04	irgsp1_rep	CDS	29726342	29726446	.	+	0	Parent=Os04t0588200-00
Chr04	irgsp1_rep	CDS	29726532	29726699	.	+	0	Parent=Os04t0588200-00
Chr04	irgsp1_rep	CDS	29726883	29726952	.	+	0	Parent=Os04t0588200-00
Chr04	irgsp1_rep	CDS	29727028	29727179	.	+	2	Parent=Os04t0588200-00
Chr04	irgsp1_rep	CDS	29727378	29727455	.	+	0	Parent=Os04t0588200-00
Chr04	irgsp1_rep	CDS	29727548	29727640	.	+	0	Parent=Os04t0588200-00
Chr04	irgsp1_rep	CDS	29727765	29727902	.	+	0	Parent=Os04t0588200-00
Chr04	irgsp1_rep	CDS	29728041	29728080	.	+	0	Parent=Os04t0588200-00
Chr04	irgsp1_rep	CDS	29728154	29728227	.	+	2	Parent=Os04t0588200-00
Chr04	irgsp1_rep	CDS	29728581	29728715	.	+	0	Parent=Os04t0588200-00
Chr04	irgsp1_rep	CDS	29729149	29729268	.	+	0	Parent=Os04t0588200-00
Chr04	irgsp1_rep	CDS	29729582	29729743	.	+	0	Parent=Os04t0588200-00
Chr04	irgsp1_rep	mRNA	29730813	29732483	.	+	.	ID=Os04t0588350-00;Name=Os04t0588350-00;Locus_id=Os04g0588350;Note=Similar to nucleotidyltransferase family protein.;Transcript_evidence=AK364339 (DDBJ);ORF_evidence=NP_565611.1 (RefSeq);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Biological Process: RNA 3'-end processing (GO:0031123),Biological Process: RNA polyadenylation (GO:0043631),Cellular Component: nucleus (GO:0005634),Molecular Function: RNA binding (GO:0003723),Molecular Function: polynucleotide adenylyltransferase activity (GO:0004652),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=Nucleotidyl transferase domain (IPR002934),Poly(A) polymerase%2C RNA-binding domain (IPR007010),Poly(A) polymerase%2C central domain (IPR007012),Nucleotidyltransferase%2C class I%2C C-terminal-like (IPR011068),Poly(A) polymerase (IPR014492);TENOR=Os04t0588350-00
Chr04	irgsp1_rep	CDS	29730813	29732483	.	+	0	Parent=Os04t0588350-00
Chr04	irgsp1_rep	mRNA	29742314	29750579	.	-	.	ID=Os04t0588500-01;Name=Os04t0588500-01;Locus_id=Os04g0588500;Note=Hypothetical gene.;Transcript_evidence=AK069744 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023030M12;TENOR=Os04t0588500-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	29750579	29750579	.	-	.	Parent=Os04t0588500-01
Chr04	irgsp1_rep	CDS	29750351	29750578	.	-	0	Parent=Os04t0588500-01
Chr04	irgsp1_rep	three_prime_UTR	29750248	29750350	.	-	.	Parent=Os04t0588500-01
Chr04	irgsp1_rep	three_prime_UTR	29747691	29748005	.	-	.	Parent=Os04t0588500-01
Chr04	irgsp1_rep	three_prime_UTR	29746777	29747609	.	-	.	Parent=Os04t0588500-01
Chr04	irgsp1_rep	three_prime_UTR	29744757	29744896	.	-	.	Parent=Os04t0588500-01
Chr04	irgsp1_rep	three_prime_UTR	29743770	29743837	.	-	.	Parent=Os04t0588500-01
Chr04	irgsp1_rep	three_prime_UTR	29742314	29743001	.	-	.	Parent=Os04t0588500-01
Chr04	irgsp1_rep	mRNA	29754938	29762118	.	+	.	ID=Os04t0588700-01;Name=Os04t0588700-01;Locus_id=Os04g0588700;CGSNL Gene Symbol=MRP7;CGSNL Gene Name=MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 7;Oryzabase Gene Symbol Synonym(s)=OsABCC7%2C OsMRP7;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCC subgroup member 7%2C multidrug resistance-associated protein 7;Note=ABC transporter-like domain containing protein.;Transcript_evidence=AK099941 (DDBJ%2C Best hit);ORF_evidence=Q8GU63 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);NIAS_FLcDNA=J013121A05;Oryzabase=11958;Expression=AK099941;TENOR=Os04t0588700-01;KEGG=Os04t0588700-01
Chr04	irgsp1_rep	five_prime_UTR	29754938	29754994	.	+	.	Parent=Os04t0588700-01
Chr04	irgsp1_rep	CDS	29754995	29755070	.	+	0	Parent=Os04t0588700-01
Chr04	irgsp1_rep	CDS	29756427	29758174	.	+	2	Parent=Os04t0588700-01
Chr04	irgsp1_rep	CDS	29758461	29758547	.	+	0	Parent=Os04t0588700-01
Chr04	irgsp1_rep	CDS	29758840	29759505	.	+	0	Parent=Os04t0588700-01
Chr04	irgsp1_rep	CDS	29759668	29759832	.	+	0	Parent=Os04t0588700-01
Chr04	irgsp1_rep	CDS	29759929	29760223	.	+	0	Parent=Os04t0588700-01
Chr04	irgsp1_rep	CDS	29760355	29760569	.	+	2	Parent=Os04t0588700-01
Chr04	irgsp1_rep	CDS	29760684	29760989	.	+	0	Parent=Os04t0588700-01
Chr04	irgsp1_rep	CDS	29761271	29761334	.	+	0	Parent=Os04t0588700-01
Chr04	irgsp1_rep	CDS	29761463	29761702	.	+	2	Parent=Os04t0588700-01
Chr04	irgsp1_rep	CDS	29761790	29761929	.	+	2	Parent=Os04t0588700-01
Chr04	irgsp1_rep	three_prime_UTR	29761930	29762118	.	+	.	Parent=Os04t0588700-01
Chr04	irgsp1_rep	mRNA	29787828	29789615	.	+	.	ID=Os04t0589200-01;Name=Os04t0589200-01;Locus_id=Os04g0589200;Note=Heat shock protein DnaJ%2C cysteine-rich region domain containing protein.;Transcript_evidence=AK068571 (DDBJ%2C Best hit);ORF_evidence=NP_001078171.1 (RefSeq);GO=Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C cysteine-rich domain (IPR001305);NIAS_FLcDNA=J013156A17;Expression=AK068571;TENOR=Os04t0589200-01;KEGG=Os04t0589200-01
Chr04	irgsp1_rep	five_prime_UTR	29787828	29787876	.	+	.	Parent=Os04t0589200-01
Chr04	irgsp1_rep	CDS	29787877	29788014	.	+	0	Parent=Os04t0589200-01
Chr04	irgsp1_rep	CDS	29788940	29789036	.	+	0	Parent=Os04t0589200-01
Chr04	irgsp1_rep	CDS	29789127	29789181	.	+	2	Parent=Os04t0589200-01
Chr04	irgsp1_rep	CDS	29789279	29789387	.	+	1	Parent=Os04t0589200-01
Chr04	irgsp1_rep	three_prime_UTR	29789388	29789615	.	+	.	Parent=Os04t0589200-01
Chr04	irgsp1_rep	mRNA	29787839	29789615	.	+	.	ID=Os04t0589200-02;Name=Os04t0589200-02;Locus_id=Os04g0589200;Note=Similar to predicted protein.;Transcript_evidence=AK102463 (DDBJ%2C Best hit);ORF_evidence=NP_001078171.1 (RefSeq);GO=Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C cysteine-rich domain (IPR001305);NIAS_FLcDNA=J033094D16;Expression=AK102463;TENOR=Os04t0589200-02;KEGG=Os04t0589200-02
Chr04	irgsp1_rep	five_prime_UTR	29787839	29788930	.	+	.	Parent=Os04t0589200-02
Chr04	irgsp1_rep	CDS	29788931	29789036	.	+	0	Parent=Os04t0589200-02
Chr04	irgsp1_rep	CDS	29789127	29789181	.	+	2	Parent=Os04t0589200-02
Chr04	irgsp1_rep	CDS	29789279	29789387	.	+	1	Parent=Os04t0589200-02
Chr04	irgsp1_rep	three_prime_UTR	29789388	29789615	.	+	.	Parent=Os04t0589200-02
Chr04	irgsp1_rep	mRNA	29794618	29795360	.	-	.	ID=Os04t0589350-01;Name=Os04t0589350-01;Locus_id=Os04g0589350;Note=Hypothetical gene.;Transcript_evidence=AK289164 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100008H02;TENOR=Os04t0589350-01;KEGG=Os04t0589350-01
Chr04	irgsp1_rep	CDS	29795001	29795360	.	-	0	Parent=Os04t0589350-01
Chr04	irgsp1_rep	three_prime_UTR	29794618	29795000	.	-	.	Parent=Os04t0589350-01
Chr04	irgsp1_rep	mRNA	29795103	29797235	.	+	.	ID=Os04t0589400-00;Name=Os04t0589400-00;Locus_id=Os04g0589400;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001174073.1 (RefSeq);TENOR=Os04t0589400-00;KEGG=Os04t0589400-00
Chr04	irgsp1_rep	CDS	29795103	29797235	.	+	0	Parent=Os04t0589400-00
Chr04	irgsp1_rep	mRNA	29798282	29801702	.	+	.	ID=Os04t0589500-01;Name=Os04t0589500-01;Locus_id=Os04g0589500;Note=Conserved hypothetical protein.;Transcript_evidence=AK069707 (DDBJ%2C Best hit),AK104923 (DDBJ%2C Best hit);ORF_evidence=B9FC75 (UniProt);NIAS_FLcDNA=J023031G15,001-102-D12;TENOR=Os04t0589500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	29798282	29798282	.	+	.	Parent=Os04t0589500-01
Chr04	irgsp1_rep	CDS	29798283	29798364	.	+	0	Parent=Os04t0589500-01
Chr04	irgsp1_rep	CDS	29801212	29801477	.	+	2	Parent=Os04t0589500-01
Chr04	irgsp1_rep	three_prime_UTR	29801478	29801702	.	+	.	Parent=Os04t0589500-01
Chr04	irgsp1_rep	mRNA	29803054	29805976	.	+	.	ID=Os04t0589600-01;Name=Os04t0589600-01;Locus_id=Os04g0589600;Note=Glycosyl transferase%2C group 1 domain containing protein.;Transcript_evidence=AK061833 (DDBJ%2C Best hit),AK098964 (DDBJ%2C Best hit),AK100053 (DDBJ%2C Best hit);ORF_evidence=NP_178001.2 (RefSeq);GO=Biological Process: biosynthetic process (GO:0009058);InterPro=Glycosyl transferase%2C family 1 (IPR001296);NIAS_FLcDNA=001-040-D04,J013071F09,J013157H01;TENOR=Os04t0589600-01
Chr04	irgsp1_rep	five_prime_UTR	29803054	29803142	.	+	.	Parent=Os04t0589600-01
Chr04	irgsp1_rep	CDS	29803143	29803236	.	+	0	Parent=Os04t0589600-01
Chr04	irgsp1_rep	CDS	29803841	29803957	.	+	2	Parent=Os04t0589600-01
Chr04	irgsp1_rep	CDS	29804231	29804424	.	+	2	Parent=Os04t0589600-01
Chr04	irgsp1_rep	CDS	29804505	29804610	.	+	0	Parent=Os04t0589600-01
Chr04	irgsp1_rep	CDS	29804711	29804858	.	+	2	Parent=Os04t0589600-01
Chr04	irgsp1_rep	CDS	29805004	29805140	.	+	1	Parent=Os04t0589600-01
Chr04	irgsp1_rep	CDS	29805239	29805405	.	+	2	Parent=Os04t0589600-01
Chr04	irgsp1_rep	CDS	29805484	29805777	.	+	0	Parent=Os04t0589600-01
Chr04	irgsp1_rep	three_prime_UTR	29805778	29805976	.	+	.	Parent=Os04t0589600-01
Chr04	irgsp1_rep	mRNA	29803142	29805930	.	-	.	ID=Os04t0589650-00;Name=Os04t0589650-00;Locus_id=Os04g0589650;Note=Hypothetical protein.;Transcript_evidence=tplb0021c16 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0589650-00
Chr04	irgsp1_rep	five_prime_UTR	29805545	29805930	.	-	.	Parent=Os04t0589650-00
Chr04	irgsp1_rep	CDS	29805491	29805544	.	-	0	Parent=Os04t0589650-00
Chr04	irgsp1_rep	CDS	29805234	29805413	.	-	0	Parent=Os04t0589650-00
Chr04	irgsp1_rep	three_prime_UTR	29805222	29805233	.	-	.	Parent=Os04t0589650-00
Chr04	irgsp1_rep	three_prime_UTR	29804986	29805126	.	-	.	Parent=Os04t0589650-00
Chr04	irgsp1_rep	three_prime_UTR	29804710	29804845	.	-	.	Parent=Os04t0589650-00
Chr04	irgsp1_rep	three_prime_UTR	29804523	29804609	.	-	.	Parent=Os04t0589650-00
Chr04	irgsp1_rep	three_prime_UTR	29804234	29804438	.	-	.	Parent=Os04t0589650-00
Chr04	irgsp1_rep	three_prime_UTR	29803825	29803960	.	-	.	Parent=Os04t0589650-00
Chr04	irgsp1_rep	three_prime_UTR	29803142	29803226	.	-	.	Parent=Os04t0589650-00
Chr04	irgsp1_rep	mRNA	29809222	29810808	.	+	.	ID=Os04t0589700-01;Name=Os04t0589700-01;Locus_id=Os04g0589700;Oryzabase Gene Symbol Synonym(s)=OsPUB35;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 35%2C U-box protein 35;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK070506 (DDBJ%2C Best hit);ORF_evidence=A2XWY7 (UniProt);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488);InterPro=U box domain (IPR003613),Armadillo-like helical (IPR011989),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023050H20;Oryzabase=17827;Expression=AK070506;TENOR=Os04t0589700-01;KEGG=Os04t0589700-01
Chr04	irgsp1_rep	five_prime_UTR	29809222	29809262	.	+	.	Parent=Os04t0589700-01
Chr04	irgsp1_rep	CDS	29809263	29810528	.	+	0	Parent=Os04t0589700-01
Chr04	irgsp1_rep	three_prime_UTR	29810529	29810808	.	+	.	Parent=Os04t0589700-01
Chr04	irgsp1_rep	mRNA	29811954	29812662	.	+	.	ID=Os04t0589800-01;Name=Os04t0589800-01;Locus_id=Os04g0589800;CGSNL Gene Symbol=LEA1;CGSNL Gene Name=LATE EMBRYOGENESIS ABUNDANT PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsLEA1;Oryzabase Gene Name Synonym(s)=late embryogenesis abundant protein 1;Note=Late embryogenesis abundant (LEA) group 1 family protein.;Transcript_evidence=AK063682 (DDBJ%2C Best hit);ORF_evidence=A2XWY8 (UniProt);GO=Biological Process: embryo development (GO:0009790);InterPro=Late embryogenesis abundant protein%2C LEA-25/LEA-D113 (IPR005513);NIAS_FLcDNA=001-119-E08;Oryzabase=10171;Expression=AK063682;TENOR=Os04t0589800-01;KEGG=Os04t0589800-01
Chr04	irgsp1_rep	five_prime_UTR	29811954	29812067	.	+	.	Parent=Os04t0589800-01
Chr04	irgsp1_rep	CDS	29812068	29812436	.	+	0	Parent=Os04t0589800-01
Chr04	irgsp1_rep	three_prime_UTR	29812437	29812662	.	+	.	Parent=Os04t0589800-01
Chr04	irgsp1_rep	mRNA	29814059	29818102	.	-	.	ID=Os04t0589900-01;Name=Os04t0589900-01;Locus_id=Os04g0589900;Oryzabase Gene Symbol Synonym(s)=OsAHP1;Note=Protein of unknown function DUF296 domain containing protein.;Transcript_evidence=AK070449 (DDBJ%2C Best hit);ORF_evidence=NP_001149978.1 (RefSeq);GO=Molecular Function: DNA binding (GO:0003677);InterPro=Domain of unknown function DUF296 (IPR005175),AT hook%2C DNA-binding motif (IPR017956);NIAS_FLcDNA=J023048G11;Oryzabase=16049;Expression=AK070449;TENOR=Os04t0589900-01;KEGG=Os04t0589900-01
Chr04	irgsp1_rep	five_prime_UTR	29817811	29818102	.	-	.	Parent=Os04t0589900-01
Chr04	irgsp1_rep	CDS	29817321	29817810	.	-	0	Parent=Os04t0589900-01
Chr04	irgsp1_rep	CDS	29816511	29816563	.	-	2	Parent=Os04t0589900-01
Chr04	irgsp1_rep	CDS	29815765	29815896	.	-	0	Parent=Os04t0589900-01
Chr04	irgsp1_rep	CDS	29814822	29814983	.	-	0	Parent=Os04t0589900-01
Chr04	irgsp1_rep	CDS	29814420	29814722	.	-	0	Parent=Os04t0589900-01
Chr04	irgsp1_rep	three_prime_UTR	29814059	29814419	.	-	.	Parent=Os04t0589900-01
Chr04	irgsp1_rep	mRNA	29816961	29818064	.	-	.	ID=Os04t0589900-02;Name=Os04t0589900-02;Locus_id=Os04g0589900;Oryzabase Gene Symbol Synonym(s)=OsAHP1;Note=Similar to AT-hook protein 1.;Transcript_evidence=AK108394 (DDBJ%2C Best hit);ORF_evidence=NP_001149978.1 (RefSeq);NIAS_FLcDNA=002-142-F08;Oryzabase=16049;Expression=AK108394;TENOR=Os04t0589900-02;KEGG=Os04t0589900-02
Chr04	irgsp1_rep	five_prime_UTR	29817811	29818064	.	-	.	Parent=Os04t0589900-02
Chr04	irgsp1_rep	CDS	29817274	29817810	.	-	0	Parent=Os04t0589900-02
Chr04	irgsp1_rep	three_prime_UTR	29816961	29817273	.	-	.	Parent=Os04t0589900-02
Chr04	irgsp1_rep	mRNA	29814044	29817970	.	-	.	ID=Os04t0589900-03;Name=Os04t0589900-03;Locus_id=Os04g0589900;Oryzabase Gene Symbol Synonym(s)=OsAHP1;Note=Protein of unknown function DUF296 domain containing protein.;Transcript_evidence=AK060672 (DDBJ%2C Best hit);ORF_evidence=NP_001149978.1 (RefSeq);GO=Molecular Function: DNA binding (GO:0003677);InterPro=Domain of unknown function DUF296 (IPR005175),AT hook%2C DNA-binding motif (IPR017956);NIAS_FLcDNA=001-028-G12;Oryzabase=16049;TENOR=Os04t0589900-03
Chr04	irgsp1_rep	five_prime_UTR	29817811	29817970	.	-	.	Parent=Os04t0589900-03
Chr04	irgsp1_rep	CDS	29817321	29817810	.	-	0	Parent=Os04t0589900-03
Chr04	irgsp1_rep	CDS	29816511	29816563	.	-	2	Parent=Os04t0589900-03
Chr04	irgsp1_rep	CDS	29815765	29815896	.	-	0	Parent=Os04t0589900-03
Chr04	irgsp1_rep	CDS	29814822	29814983	.	-	0	Parent=Os04t0589900-03
Chr04	irgsp1_rep	CDS	29814420	29814722	.	-	0	Parent=Os04t0589900-03
Chr04	irgsp1_rep	three_prime_UTR	29814044	29814419	.	-	.	Parent=Os04t0589900-03
Chr04	irgsp1_rep	mRNA	29827885	29828919	.	+	.	ID=Os04t0590100-00;Name=Os04t0590100-00;Locus_id=Os04g0590100;CGSNL Gene Symbol=HMP28;CGSNL Gene Name=HEAVY METAL-ASSOCIATED PROTEIN 28;Oryzabase Gene Symbol Synonym(s)=OsHMP28;Oryzabase Gene Name Synonym(s)=Heavy metal-associated protein 28;Note=Heavy metal-associated domain%2C HMA domain containing protein.;Transcript_evidence=EU943273 (DDBJ);ORF_evidence=NP_001053703.1 (RefSeq);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);Oryzabase=23547;TENOR=Os04t0590100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	29827885	29827947	.	+	.	Parent=Os04t0590100-00
Chr04	irgsp1_rep	CDS	29827948	29827972	.	+	0	Parent=Os04t0590100-00
Chr04	irgsp1_rep	CDS	29828089	29828246	.	+	2	Parent=Os04t0590100-00
Chr04	irgsp1_rep	CDS	29828335	29828419	.	+	0	Parent=Os04t0590100-00
Chr04	irgsp1_rep	CDS	29828525	29828919	.	+	2	Parent=Os04t0590100-00
Chr04	irgsp1_rep	mRNA	29831246	29832981	.	-	.	ID=Os04t0590200-01;Name=Os04t0590200-01;Locus_id=Os04g0590200;Note=Protein of unknown function DUF296 domain containing protein.;Transcript_evidence=AK243291 (DDBJ%2C Best hit);ORF_evidence=A1DR79 (UniProt);InterPro=Domain of unknown function DUF296 (IPR005175),Predicted AT-hook DNA-binding (IPR014476);NIAS_FLcDNA=J100053D09;TENOR=Os04t0590200-01;KEGG=Os04t0590200-01
Chr04	irgsp1_rep	five_prime_UTR	29832514	29832981	.	-	.	Parent=Os04t0590200-01
Chr04	irgsp1_rep	CDS	29831596	29832513	.	-	0	Parent=Os04t0590200-01
Chr04	irgsp1_rep	three_prime_UTR	29831246	29831595	.	-	.	Parent=Os04t0590200-01
Chr04	irgsp1_rep	mRNA	29852551	29853446	.	-	.	ID=Os04t0590283-00;Name=Os04t0590283-00;Locus_id=Os04g0590283;Note=Hypothetical protein.;Transcript_evidence=BT019283 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0590283-00
Chr04	irgsp1_rep	five_prime_UTR	29853362	29853446	.	-	.	Parent=Os04t0590283-00
Chr04	irgsp1_rep	CDS	29853103	29853361	.	-	0	Parent=Os04t0590283-00
Chr04	irgsp1_rep	CDS	29852940	29853007	.	-	2	Parent=Os04t0590283-00
Chr04	irgsp1_rep	three_prime_UTR	29852908	29852939	.	-	.	Parent=Os04t0590283-00
Chr04	irgsp1_rep	three_prime_UTR	29852551	29852811	.	-	.	Parent=Os04t0590283-00
Chr04	irgsp1_rep	mRNA	29853141	29854596	.	+	.	ID=Os04t0590366-00;Name=Os04t0590366-00;Locus_id=Os04g0590366;Note=Hypothetical conserved gene.;Transcript_evidence=BT067949 (DDBJ);ORF_evidence=NP_001174074.1 (RefSeq);TENOR=Os04t0590366-00;KEGG=Os04t0590366-00
Chr04	irgsp1_rep	CDS	29853141	29853494	.	+	0	Parent=Os04t0590366-00
Chr04	irgsp1_rep	CDS	29853784	29854002	.	+	0	Parent=Os04t0590366-00
Chr04	irgsp1_rep	CDS	29854072	29854596	.	+	0	Parent=Os04t0590366-00
Chr04	irgsp1_rep	mRNA	29857572	29860316	.	+	.	ID=Os04t0590400-01;Name=Os04t0590400-01;Locus_id=Os04g0590400;RAP-DB Gene Symbol Synonym(s)=OsGRAS23%2C GRAS23;RAP-DB Gene Name Synonym(s)=GRAS transcription factor 23;CGSNL Gene Symbol=GRAS23;CGSNL Gene Name=GRAS PROTEIN 23;Oryzabase Gene Symbol Synonym(s)=OsGRAS23%2C OsGRAS-23%2C GRAS-23;Oryzabase Gene Name Synonym(s)=GRAS transcription factor 23%2C GRAS protein 23;Note=GRAS transcription factor%2C Drought stress response;Transcript_evidence=AK100784;ORF_evidence=Q7XLZ1;InterPro=Transcription factor GRAS (IPR005202);NIAS_FLcDNA=J023120N07;Manual Curation=June 15%2C 2015;Literature_PMID=26067440;Oryzabase=19834;Expression=AK100784;TENOR=Os04t0590400-01;KEGG=Os04t0590400-01
Chr04	irgsp1_rep	five_prime_UTR	29857572	29857833	.	+	.	Parent=Os04t0590400-01
Chr04	irgsp1_rep	five_prime_UTR	29858017	29858077	.	+	.	Parent=Os04t0590400-01
Chr04	irgsp1_rep	CDS	29858078	29859988	.	+	0	Parent=Os04t0590400-01
Chr04	irgsp1_rep	three_prime_UTR	29859989	29860316	.	+	.	Parent=Os04t0590400-01
Chr04	irgsp1_rep	mRNA	29863417	29863603	.	-	.	ID=Os04t0590451-00;Name=Os04t0590451-00;Locus_id=Os04g0590451;Note=Non-protein coding transcript.;Transcript_evidence=EU947976 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0590451-00
Chr04	irgsp1_rep	exon	29863417	29863603	.	-	.	Parent=Os04t0590451-00
Chr04	irgsp1_rep	mRNA	29878856	29879360	.	-	.	ID=Os04t0590650-00;Name=Os04t0590650-00;Locus_id=Os04g0590650;Note=Hypothetical gene.;Transcript_evidence=EU948983 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0590650-00
Chr04	irgsp1_rep	five_prime_UTR	29879359	29879360	.	-	.	Parent=Os04t0590650-00
Chr04	irgsp1_rep	CDS	29878856	29879358	.	-	0	Parent=Os04t0590650-00
Chr04	irgsp1_rep	mRNA	29880299	29881660	.	+	.	ID=Os04t0590800-01;Name=Os04t0590800-01;Locus_id=Os04g0590800;Oryzabase Gene Symbol Synonym(s)=OsbHLH050;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 050;Note=Similar to OSIGBa0142I02-OSIGBa0101B20.1 protein.;Transcript_evidence=AK062895 (DDBJ%2C Best hit);ORF_evidence=Q01HI8 (UniProt);NIAS_FLcDNA=001-108-E08;Oryzabase=15341;Expression=AK062895;TENOR=Os04t0590800-01;KEGG=Os04t0590800-01
Chr04	irgsp1_rep	five_prime_UTR	29880299	29880427	.	+	.	Parent=Os04t0590800-01
Chr04	irgsp1_rep	CDS	29880428	29880511	.	+	0	Parent=Os04t0590800-01
Chr04	irgsp1_rep	CDS	29881173	29881295	.	+	0	Parent=Os04t0590800-01
Chr04	irgsp1_rep	three_prime_UTR	29881296	29881660	.	+	.	Parent=Os04t0590800-01
Chr04	irgsp1_rep	mRNA	29883339	29885139	.	-	.	ID=Os04t0590900-01;Name=Os04t0590900-01;Locus_id=Os04g0590900;Note=Similar to RING-H2 finger protein ATL1B.;Transcript_evidence=AK066752 (DDBJ%2C Best hit);ORF_evidence=Q01HI7 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J013074C24;Expression=AK066752;TENOR=Os04t0590900-01;KEGG=Os04t0590900-01
Chr04	irgsp1_rep	five_prime_UTR	29884828	29885139	.	-	.	Parent=Os04t0590900-01
Chr04	irgsp1_rep	CDS	29883676	29884827	.	-	0	Parent=Os04t0590900-01
Chr04	irgsp1_rep	three_prime_UTR	29883339	29883675	.	-	.	Parent=Os04t0590900-01
Chr04	irgsp1_rep	mRNA	29883700	29885364	.	+	.	ID=Os04t0590950-00;Name=Os04t0590950-00;Locus_id=Os04g0590950;Note=Hypothetical gene.;Transcript_evidence=BT053833 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0590950-00;KEGG=Os04t0590950-00
Chr04	irgsp1_rep	five_prime_UTR	29883700	29884063	.	+	.	Parent=Os04t0590950-00
Chr04	irgsp1_rep	five_prime_UTR	29884499	29885036	.	+	.	Parent=Os04t0590950-00
Chr04	irgsp1_rep	CDS	29885037	29885339	.	+	0	Parent=Os04t0590950-00
Chr04	irgsp1_rep	three_prime_UTR	29885340	29885364	.	+	.	Parent=Os04t0590950-00
Chr04	irgsp1_rep	mRNA	29888205	29891194	.	-	.	ID=Os04t0591000-01;Name=Os04t0591000-01;Locus_id=Os04g0591000;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK072902 (DDBJ%2C Best hit);ORF_evidence=Q01HI6 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023147E13;Expression=AK072902;TENOR=Os04t0591000-01;KEGG=Os04t0591000-01
Chr04	irgsp1_rep	five_prime_UTR	29891171	29891194	.	-	.	Parent=Os04t0591000-01
Chr04	irgsp1_rep	CDS	29890841	29891170	.	-	0	Parent=Os04t0591000-01
Chr04	irgsp1_rep	CDS	29890635	29890733	.	-	0	Parent=Os04t0591000-01
Chr04	irgsp1_rep	CDS	29889522	29889803	.	-	0	Parent=Os04t0591000-01
Chr04	irgsp1_rep	CDS	29889084	29889248	.	-	0	Parent=Os04t0591000-01
Chr04	irgsp1_rep	three_prime_UTR	29888981	29889083	.	-	.	Parent=Os04t0591000-01
Chr04	irgsp1_rep	three_prime_UTR	29888205	29888456	.	-	.	Parent=Os04t0591000-01
Chr04	irgsp1_rep	mRNA	29894815	29896857	.	-	.	ID=Os04t0591100-01;Name=Os04t0591100-01;Locus_id=Os04g0591100;Note=Protein of unknown function DUF597 family protein.;Transcript_evidence=AK069139 (DDBJ%2C Best hit);ORF_evidence=B4FK14 (UniProt);InterPro=Protein of unknown function DUF597 (IPR006734);NIAS_FLcDNA=J023008F14;Expression=AK069139;TENOR=Os04t0591100-01;KEGG=Os04t0591100-01
Chr04	irgsp1_rep	five_prime_UTR	29896625	29896857	.	-	.	Parent=Os04t0591100-01
Chr04	irgsp1_rep	CDS	29896568	29896624	.	-	0	Parent=Os04t0591100-01
Chr04	irgsp1_rep	CDS	29896247	29896450	.	-	0	Parent=Os04t0591100-01
Chr04	irgsp1_rep	CDS	29895666	29895881	.	-	0	Parent=Os04t0591100-01
Chr04	irgsp1_rep	CDS	29895305	29895577	.	-	0	Parent=Os04t0591100-01
Chr04	irgsp1_rep	three_prime_UTR	29894815	29895304	.	-	.	Parent=Os04t0591100-01
Chr04	irgsp1_rep	mRNA	29917851	29921669	.	+	.	ID=Os04t0591232-01;Name=Os04t0591232-01;Locus_id=Os04g0591232;Note=Domain of unknown function DUF1263 domain containing protein.;Transcript_evidence=AK288276 (DDBJ%2C Best hit);ORF_evidence=Q94HT7 (UniProt);InterPro=Domain of unknown function DUF1263 (IPR010685);NIAS_FLcDNA=J090017I23;TENOR=Os04t0591232-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	29917851	29919007	.	+	.	Parent=Os04t0591232-01
Chr04	irgsp1_rep	CDS	29919008	29919211	.	+	0	Parent=Os04t0591232-01
Chr04	irgsp1_rep	three_prime_UTR	29919212	29921669	.	+	.	Parent=Os04t0591232-01
Chr04	irgsp1_rep	mRNA	29938912	29939951	.	+	.	ID=Os04t0591300-01;Name=Os04t0591300-01;Locus_id=Os04g0591300;Note=Similar to OSIGBa0142I02-OSIGBa0101B20.10 protein.;Transcript_evidence=AK105120 (DDBJ%2C Best hit);ORF_evidence=Q01HH9 (UniProt);NIAS_FLcDNA=001-101-B07;Expression=AK105120;TENOR=Os04t0591300-01;KEGG=Os04t0591300-01
Chr04	irgsp1_rep	five_prime_UTR	29938912	29939078	.	+	.	Parent=Os04t0591300-01
Chr04	irgsp1_rep	CDS	29939079	29939618	.	+	0	Parent=Os04t0591300-01
Chr04	irgsp1_rep	three_prime_UTR	29939619	29939951	.	+	.	Parent=Os04t0591300-01
Chr04	irgsp1_rep	mRNA	29958106	29959638	.	-	.	ID=Os04t0591900-00;Name=Os04t0591900-00;Locus_id=Os04g0591900;Oryzabase Gene Symbol Synonym(s)=OsFbox231%2C Os_F0565;Oryzabase Gene Name Synonym(s)=F-box protein 231;Note=F-box associated domain%2C type 3 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001053713.2 (RefSeq);InterPro=F-box associated domain%2C type 3 (IPR013187),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17018;TENOR=Os04t0591900-00
Chr04	irgsp1_rep	CDS	29958106	29959638	.	-	0	Parent=Os04t0591900-00
Chr04	irgsp1_rep	mRNA	29965107	29966920	.	-	.	ID=Os04t0592300-01;Name=Os04t0592300-01;Locus_id=Os04g0592300;Note=Hypothetical protein.;Transcript_evidence=AK107413 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-127-E11;Expression=AK107413;TENOR=Os04t0592300-01;KEGG=Os04t0592300-01
Chr04	irgsp1_rep	five_prime_UTR	29966376	29966920	.	-	.	Parent=Os04t0592300-01
Chr04	irgsp1_rep	CDS	29965887	29966375	.	-	0	Parent=Os04t0592300-01
Chr04	irgsp1_rep	three_prime_UTR	29965107	29965886	.	-	.	Parent=Os04t0592300-01
Chr04	irgsp1_rep	mRNA	29965152	29967982	.	+	.	ID=Os04t0592400-01;Name=Os04t0592400-01;Locus_id=Os04g0592400;Note=t-snare domain containing protein.;Transcript_evidence=AK073937 (DDBJ%2C Best hit);ORF_evidence=Q01HH5 (UniProt);InterPro=Protein of unknown function DUF827%2C plant (IPR008545);NIAS_FLcDNA=J033075G21;Expression=AK073937;TENOR=Os04t0592400-01;KEGG=Os04t0592400-01
Chr04	irgsp1_rep	five_prime_UTR	29965152	29965289	.	+	.	Parent=Os04t0592400-01
Chr04	irgsp1_rep	CDS	29965290	29965309	.	+	0	Parent=Os04t0592400-01
Chr04	irgsp1_rep	CDS	29965471	29965663	.	+	1	Parent=Os04t0592400-01
Chr04	irgsp1_rep	CDS	29965765	29967840	.	+	0	Parent=Os04t0592400-01
Chr04	irgsp1_rep	three_prime_UTR	29967841	29967982	.	+	.	Parent=Os04t0592400-01
Chr04	irgsp1_rep	mRNA	29966589	29968135	.	+	.	ID=Os04t0592400-02;Name=Os04t0592400-02;Locus_id=Os04g0592400;Note=Hypothetical conserved gene.;Transcript_evidence=AK059702 (DDBJ%2C Best hit);ORF_evidence=Q5VSV9 (UniProt);NIAS_FLcDNA=001-032-D01;Expression=AK059702;TENOR=Os04t0592400-02;KEGG=Os04t0592400-02
Chr04	irgsp1_rep	five_prime_UTR	29966589	29966589	.	+	.	Parent=Os04t0592400-02
Chr04	irgsp1_rep	CDS	29966590	29967840	.	+	0	Parent=Os04t0592400-02
Chr04	irgsp1_rep	three_prime_UTR	29967841	29968135	.	+	.	Parent=Os04t0592400-02
Chr04	irgsp1_rep	mRNA	29969365	29972655	.	-	.	ID=Os04t0592500-01;Name=Os04t0592500-01;Locus_id=Os04g0592500;Note=Phosphoenolpyruvate carboxykinase%2C ATP-utilising domain containing protein.;Transcript_evidence=AK066893 (DDBJ%2C Best hit);ORF_evidence=Q01HH4 (UniProt);GO=Biological Process: gluconeogenesis (GO:0006094),Molecular Function: phosphoenolpyruvate carboxykinase activity (GO:0004611),Molecular Function: phosphoenolpyruvate carboxykinase (ATP) activity (GO:0004612),Molecular Function: ATP binding (GO:0005524),Molecular Function: purine nucleotide binding (GO:0017076);InterPro=Phosphoenolpyruvate carboxykinase%2C ATP-utilising (IPR001272),Phosphoenolpyruvate carboxykinase%2C N-terminal (IPR008210),Phosphoenolpyruvate carboxykinase%2C C-terminal (IPR013035);NIAS_FLcDNA=J013090K18;Expression=AK066893;TENOR=Os04t0592500-01;KEGG=Os04t0592500-01
Chr04	irgsp1_rep	five_prime_UTR	29972585	29972655	.	-	.	Parent=Os04t0592500-01
Chr04	irgsp1_rep	CDS	29972513	29972584	.	-	0	Parent=Os04t0592500-01
Chr04	irgsp1_rep	CDS	29972078	29972126	.	-	0	Parent=Os04t0592500-01
Chr04	irgsp1_rep	CDS	29971650	29971769	.	-	2	Parent=Os04t0592500-01
Chr04	irgsp1_rep	CDS	29971470	29971564	.	-	2	Parent=Os04t0592500-01
Chr04	irgsp1_rep	CDS	29971087	29971292	.	-	0	Parent=Os04t0592500-01
Chr04	irgsp1_rep	CDS	29970806	29970994	.	-	1	Parent=Os04t0592500-01
Chr04	irgsp1_rep	CDS	29970120	29970273	.	-	1	Parent=Os04t0592500-01
Chr04	irgsp1_rep	CDS	29969982	29970045	.	-	0	Parent=Os04t0592500-01
Chr04	irgsp1_rep	CDS	29969818	29969892	.	-	2	Parent=Os04t0592500-01
Chr04	irgsp1_rep	CDS	29969649	29969728	.	-	2	Parent=Os04t0592500-01
Chr04	irgsp1_rep	three_prime_UTR	29969365	29969648	.	-	.	Parent=Os04t0592500-01
Chr04	irgsp1_rep	mRNA	29975251	29977828	.	-	.	ID=Os04t0592600-01;Name=Os04t0592600-01;Locus_id=Os04g0592600;Note=Similar to OSIGBa0142I02-OSIGBa0101B20.17 protein.;Transcript_evidence=AK071102 (DDBJ%2C Best hit);ORF_evidence=Q01HH2 (UniProt);InterPro=SNARE associated Golgi protein (IPR015414);NIAS_FLcDNA=J023077L10;TENOR=Os04t0592600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	29977671	29977828	.	-	.	Parent=Os04t0592600-01
Chr04	irgsp1_rep	CDS	29977510	29977670	.	-	0	Parent=Os04t0592600-01
Chr04	irgsp1_rep	CDS	29976173	29976443	.	-	1	Parent=Os04t0592600-01
Chr04	irgsp1_rep	CDS	29975887	29976057	.	-	0	Parent=Os04t0592600-01
Chr04	irgsp1_rep	CDS	29975638	29975799	.	-	0	Parent=Os04t0592600-01
Chr04	irgsp1_rep	three_prime_UTR	29975251	29975637	.	-	.	Parent=Os04t0592600-01
Chr04	irgsp1_rep	mRNA	29981606	29988159	.	-	.	ID=Os04t0592700-01;Name=Os04t0592700-01;Locus_id=Os04g0592700;Oryzabase Gene Symbol Synonym(s)=OsWD40-108;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK101611 (DDBJ%2C Best hit);ORF_evidence=Q01HH1 (UniProt);GO=Biological Process: rRNA processing (GO:0006364),Cellular Component: small-subunit processome (GO:0032040),Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),Small-subunit processome%2C Utp13 (IPR013934),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J033052D05;Oryzabase=10789;Expression=AK101611;TENOR=Os04t0592700-01;KEGG=Os04t0592700-01
Chr04	irgsp1_rep	five_prime_UTR	29988083	29988159	.	-	.	Parent=Os04t0592700-01
Chr04	irgsp1_rep	CDS	29987735	29988082	.	-	0	Parent=Os04t0592700-01
Chr04	irgsp1_rep	CDS	29986888	29987070	.	-	0	Parent=Os04t0592700-01
Chr04	irgsp1_rep	CDS	29986536	29986685	.	-	0	Parent=Os04t0592700-01
Chr04	irgsp1_rep	CDS	29985813	29986015	.	-	0	Parent=Os04t0592700-01
Chr04	irgsp1_rep	CDS	29985440	29985725	.	-	1	Parent=Os04t0592700-01
Chr04	irgsp1_rep	CDS	29985225	29985359	.	-	0	Parent=Os04t0592700-01
Chr04	irgsp1_rep	CDS	29984995	29985113	.	-	0	Parent=Os04t0592700-01
Chr04	irgsp1_rep	CDS	29984217	29984373	.	-	1	Parent=Os04t0592700-01
Chr04	irgsp1_rep	CDS	29983874	29984120	.	-	0	Parent=Os04t0592700-01
Chr04	irgsp1_rep	CDS	29983712	29983788	.	-	2	Parent=Os04t0592700-01
Chr04	irgsp1_rep	CDS	29983121	29983240	.	-	0	Parent=Os04t0592700-01
Chr04	irgsp1_rep	CDS	29982691	29982821	.	-	0	Parent=Os04t0592700-01
Chr04	irgsp1_rep	CDS	29982443	29982617	.	-	1	Parent=Os04t0592700-01
Chr04	irgsp1_rep	CDS	29982011	29982355	.	-	0	Parent=Os04t0592700-01
Chr04	irgsp1_rep	three_prime_UTR	29981606	29982010	.	-	.	Parent=Os04t0592700-01
Chr04	irgsp1_rep	mRNA	29995755	29997261	.	-	.	ID=Os04t0593200-01;Name=Os04t0593200-01;Locus_id=Os04g0593200;Note=Myb transcription factor domain containing protein.;Transcript_evidence=AK243271 (DDBJ%2C Best hit);ORF_evidence=NP_001105856.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J100049K04;TENOR=Os04t0593200-01;KEGG=Os04t0593200-01
Chr04	irgsp1_rep	five_prime_UTR	29997173	29997261	.	-	.	Parent=Os04t0593200-01
Chr04	irgsp1_rep	CDS	29996901	29997172	.	-	0	Parent=Os04t0593200-01
Chr04	irgsp1_rep	CDS	29995966	29996716	.	-	1	Parent=Os04t0593200-01
Chr04	irgsp1_rep	three_prime_UTR	29995755	29995965	.	-	.	Parent=Os04t0593200-01
Chr04	irgsp1_rep	mRNA	30001534	30002419	.	+	.	ID=Os04t0593400-00;Name=Os04t0593400-00;Locus_id=Os04g0593400;Note=Similar to OSIGBa0142I02-OSIGBa0101B20.20 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01HG9 (UniProt);GO=Biological Process: defense response (GO:0006952),Biological Process: response to biotic stimulus (GO:0009607);InterPro=Bet v I allergen (IPR000916),START-like domain (IPR023393);TENOR=Os04t0593400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	30001534	30001717	.	+	0	Parent=Os04t0593400-00
Chr04	irgsp1_rep	CDS	30002118	30002419	.	+	2	Parent=Os04t0593400-00
Chr04	irgsp1_rep	mRNA	30004294	30005122	.	+	.	ID=Os04t0593500-00;Name=Os04t0593500-00;Locus_id=Os04g0593500;Note=Similar to OSIGBa0142I02-OSIGBa0101B20.21 protein.;Transcript_evidence=AK252882 (DDBJ);ORF_evidence=Q01HG8 (UniProt);GO=Biological Process: defense response (GO:0006952),Biological Process: response to biotic stimulus (GO:0009607);InterPro=Bet v I allergen (IPR000916),START-like domain (IPR023393);TENOR=Os04t0593500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	30004294	30004306	.	+	.	Parent=Os04t0593500-00
Chr04	irgsp1_rep	CDS	30004307	30004490	.	+	0	Parent=Os04t0593500-00
Chr04	irgsp1_rep	CDS	30004791	30005122	.	+	2	Parent=Os04t0593500-00
Chr04	irgsp1_rep	mRNA	30009263	30011384	.	+	.	ID=Os04t0593600-01;Name=Os04t0593600-01;Locus_id=Os04g0593600;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK058695 (DDBJ%2C Best hit);ORF_evidence=Q01HG7 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C6HC-type (IPR002867),Zinc finger%2C C2H2 (IPR007087);NIAS_FLcDNA=001-019-B08;TENOR=Os04t0593600-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	30009263	30009263	.	+	.	Parent=Os04t0593600-01
Chr04	irgsp1_rep	CDS	30009264	30009398	.	+	0	Parent=Os04t0593600-01
Chr04	irgsp1_rep	CDS	30010040	30010254	.	+	0	Parent=Os04t0593600-01
Chr04	irgsp1_rep	CDS	30010340	30010493	.	+	1	Parent=Os04t0593600-01
Chr04	irgsp1_rep	CDS	30010891	30011022	.	+	0	Parent=Os04t0593600-01
Chr04	irgsp1_rep	three_prime_UTR	30011023	30011384	.	+	.	Parent=Os04t0593600-01
Chr04	irgsp1_rep	mRNA	30012155	30016413	.	+	.	ID=Os04t0593700-01;Name=Os04t0593700-01;Locus_id=Os04g0593700;Note=RWD domain domain containing protein.;Transcript_evidence=AK069584 (DDBJ%2C Best hit);ORF_evidence=Q7F9L6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=RWD domain (IPR006575),Ubiquitin-conjugating enzyme/RWD-like (IPR016135);NIAS_FLcDNA=J023020B01;TENOR=Os04t0593700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	30012155	30012274	.	+	.	Parent=Os04t0593700-01
Chr04	irgsp1_rep	CDS	30012275	30012427	.	+	0	Parent=Os04t0593700-01
Chr04	irgsp1_rep	CDS	30013174	30013248	.	+	0	Parent=Os04t0593700-01
Chr04	irgsp1_rep	CDS	30013339	30014037	.	+	0	Parent=Os04t0593700-01
Chr04	irgsp1_rep	three_prime_UTR	30014038	30014536	.	+	.	Parent=Os04t0593700-01
Chr04	irgsp1_rep	three_prime_UTR	30015220	30015443	.	+	.	Parent=Os04t0593700-01
Chr04	irgsp1_rep	three_prime_UTR	30015555	30015695	.	+	.	Parent=Os04t0593700-01
Chr04	irgsp1_rep	three_prime_UTR	30015897	30016413	.	+	.	Parent=Os04t0593700-01
Chr04	irgsp1_rep	mRNA	30016919	30021073	.	+	.	ID=Os04t0593800-01;Name=Os04t0593800-01;Locus_id=Os04g0593800;Note=Ubiquitin-conjugating enzyme/RWD-like domain containing protein.;Transcript_evidence=AK102739 (DDBJ%2C Best hit);ORF_evidence=A2XX17 (UniProt);InterPro=Ubiquitin-conjugating enzyme/RWD-like (IPR016135);NIAS_FLcDNA=J033106E03;TENOR=Os04t0593800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	30016919	30017056	.	+	.	Parent=Os04t0593800-01
Chr04	irgsp1_rep	CDS	30017057	30017227	.	+	0	Parent=Os04t0593800-01
Chr04	irgsp1_rep	CDS	30017826	30017900	.	+	0	Parent=Os04t0593800-01
Chr04	irgsp1_rep	CDS	30017986	30018069	.	+	0	Parent=Os04t0593800-01
Chr04	irgsp1_rep	three_prime_UTR	30018070	30018493	.	+	.	Parent=Os04t0593800-01
Chr04	irgsp1_rep	three_prime_UTR	30018888	30019244	.	+	.	Parent=Os04t0593800-01
Chr04	irgsp1_rep	three_prime_UTR	30020004	30020227	.	+	.	Parent=Os04t0593800-01
Chr04	irgsp1_rep	three_prime_UTR	30020331	30020466	.	+	.	Parent=Os04t0593800-01
Chr04	irgsp1_rep	three_prime_UTR	30020644	30021073	.	+	.	Parent=Os04t0593800-01
Chr04	irgsp1_rep	mRNA	30022765	30026167	.	-	.	ID=Os04t0594000-01;Name=Os04t0594000-01;Locus_id=Os04g0594000;Note=Similar to OSIGBa0142I02-OSIGBa0101B20.26 protein.;Transcript_evidence=AK063313 (DDBJ%2C Best hit);ORF_evidence=Q01HG3 (UniProt);NIAS_FLcDNA=001-113-G05;TENOR=Os04t0594000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	30026099	30026167	.	-	.	Parent=Os04t0594000-01
Chr04	irgsp1_rep	CDS	30025751	30026098	.	-	0	Parent=Os04t0594000-01
Chr04	irgsp1_rep	CDS	30025252	30025281	.	-	0	Parent=Os04t0594000-01
Chr04	irgsp1_rep	three_prime_UTR	30025203	30025251	.	-	.	Parent=Os04t0594000-01
Chr04	irgsp1_rep	three_prime_UTR	30024571	30025120	.	-	.	Parent=Os04t0594000-01
Chr04	irgsp1_rep	three_prime_UTR	30023914	30024299	.	-	.	Parent=Os04t0594000-01
Chr04	irgsp1_rep	three_prime_UTR	30023415	30023614	.	-	.	Parent=Os04t0594000-01
Chr04	irgsp1_rep	three_prime_UTR	30023147	30023288	.	-	.	Parent=Os04t0594000-01
Chr04	irgsp1_rep	three_prime_UTR	30022765	30023044	.	-	.	Parent=Os04t0594000-01
Chr04	irgsp1_rep	mRNA	30027568	30027754	.	-	.	ID=Os04t0594050-00;Name=Os04t0594050-00;Locus_id=Os04g0594050;Note=Similar to predicted protein.;Transcript_evidence=EU943492 (DDBJ);ORF_evidence=XP_002321824.1 (RefSeq);TENOR=Os04t0594050-00;KEGG=Os04t0594050-00
Chr04	irgsp1_rep	five_prime_UTR	30027743	30027754	.	-	.	Parent=Os04t0594050-00
Chr04	irgsp1_rep	CDS	30027632	30027742	.	-	0	Parent=Os04t0594050-00
Chr04	irgsp1_rep	three_prime_UTR	30027568	30027631	.	-	.	Parent=Os04t0594050-00
Chr04	irgsp1_rep	mRNA	30028840	30030685	.	-	.	ID=Os04t0594100-01;Name=Os04t0594100-01;Locus_id=Os04g0594100;RAP-DB Gene Symbol Synonym(s)=OsMYB58/63;RAP-DB Gene Name Synonym(s)=myb transcription factor 58/63%2C transcription factor MYB58/63;Oryzabase Gene Symbol Synonym(s)=OsMYB58/63%2C OsMYB58%2C OsMYB63%2C MYB58/63%2C MYB58%2C MYB63%2C OsMYB58/63b%2C MYB58/63b;Oryzabase Gene Name Synonym(s)=myb transcription factor 58/63%2C transcription factor MYB58/63;Note=MYB transcription factor%2C Regulation of cellulose biosynthesis during secondary cell wall formation;Transcript_evidence=AK111960;ORF_evidence=Q0JAJ7;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeobox domain-like (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930);NIAS_FLcDNA=001-031-D02;Manual Curation=February 20%2C 2017;Literature_PMID=26070439;Oryzabase=15016;Expression=AK111960;TENOR=Os04t0594100-01;KEGG=Os04t0594100-01
Chr04	irgsp1_rep	five_prime_UTR	30030559	30030685	.	-	.	Parent=Os04t0594100-01
Chr04	irgsp1_rep	CDS	30030420	30030558	.	-	0	Parent=Os04t0594100-01
Chr04	irgsp1_rep	CDS	30030184	30030313	.	-	2	Parent=Os04t0594100-01
Chr04	irgsp1_rep	CDS	30029233	30030079	.	-	1	Parent=Os04t0594100-01
Chr04	irgsp1_rep	three_prime_UTR	30028840	30029232	.	-	.	Parent=Os04t0594100-01
Chr04	irgsp1_rep	mRNA	30046907	30050579	.	-	.	ID=Os04t0594400-01;Name=Os04t0594400-01;Locus_id=Os04g0594400;Note=Aldo/keto reductase domain containing protein.;Transcript_evidence=AK067019 (DDBJ%2C Best hit);ORF_evidence=NP_001149149.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Aldo/keto reductase (IPR001395),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013089A03;Expression=AK067019;TENOR=Os04t0594400-01;KEGG=Os04t0594400-01
Chr04	irgsp1_rep	five_prime_UTR	30050484	30050579	.	-	.	Parent=Os04t0594400-01
Chr04	irgsp1_rep	CDS	30050478	30050483	.	-	0	Parent=Os04t0594400-01
Chr04	irgsp1_rep	CDS	30049041	30049153	.	-	0	Parent=Os04t0594400-01
Chr04	irgsp1_rep	CDS	30048891	30048966	.	-	1	Parent=Os04t0594400-01
Chr04	irgsp1_rep	CDS	30047927	30048010	.	-	0	Parent=Os04t0594400-01
Chr04	irgsp1_rep	CDS	30047180	30047845	.	-	0	Parent=Os04t0594400-01
Chr04	irgsp1_rep	three_prime_UTR	30046907	30047179	.	-	.	Parent=Os04t0594400-01
Chr04	irgsp1_rep	mRNA	30052648	30054500	.	-	.	ID=Os04t0594500-01;Name=Os04t0594500-01;Locus_id=Os04g0594500;Note=Protein of unknown function DUF674 domain containing protein.;Transcript_evidence=AK106269 (DDBJ%2C Best hit);ORF_evidence=Q01HG0 (UniProt);InterPro=Protein of unknown function DUF674 (IPR007750);NIAS_FLcDNA=002-100-G07;Expression=AK106269;TENOR=Os04t0594500-01;KEGG=Os04t0594500-01
Chr04	irgsp1_rep	five_prime_UTR	30054431	30054500	.	-	.	Parent=Os04t0594500-01
Chr04	irgsp1_rep	CDS	30053792	30054430	.	-	0	Parent=Os04t0594500-01
Chr04	irgsp1_rep	CDS	30053193	30053708	.	-	0	Parent=Os04t0594500-01
Chr04	irgsp1_rep	three_prime_UTR	30052916	30053192	.	-	.	Parent=Os04t0594500-01
Chr04	irgsp1_rep	three_prime_UTR	30052648	30052821	.	-	.	Parent=Os04t0594500-01
Chr04	irgsp1_rep	mRNA	30058620	30059561	.	-	.	ID=Os04t0594700-00;Name=Os04t0594700-00;Locus_id=Os04g0594700;Note=Similar to OSIGBa0142I02-OSIGBa0101B20.30 protein.;Transcript_evidence=BT017118 (DDBJ);ORF_evidence=Q01HF9 (UniProt);InterPro=Protein of unknown function DUF674 (IPR007750);TENOR=Os04t0594700-00;KEGG=Os04t0594700-00
Chr04	irgsp1_rep	CDS	30058620	30059561	.	-	0	Parent=Os04t0594700-00
Chr04	irgsp1_rep	mRNA	30062428	30065569	.	+	.	ID=Os04t0594800-01;Name=Os04t0594800-01;Locus_id=Os04g0594800;Oryzabase Gene Symbol Synonym(s)=OsOPT6;Oryzabase Gene Name Synonym(s)=Oligopeptide transporter 6;Note=Similar to OSIGBa0142I02-OSIGBa0101B20.31 protein.;Transcript_evidence=AK070801 (DDBJ%2C Best hit);ORF_evidence=Q01HF8 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085);InterPro=Tetrapeptide transporter%2C OPT1/isp4 (IPR004648),Oligopeptide transporter OPT superfamily (IPR004813);NIAS_FLcDNA=J023072A11;Oryzabase=12494;TENOR=Os04t0594800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	30062428	30062503	.	+	.	Parent=Os04t0594800-01
Chr04	irgsp1_rep	CDS	30062504	30062734	.	+	0	Parent=Os04t0594800-01
Chr04	irgsp1_rep	CDS	30062830	30063087	.	+	0	Parent=Os04t0594800-01
Chr04	irgsp1_rep	CDS	30063182	30063279	.	+	0	Parent=Os04t0594800-01
Chr04	irgsp1_rep	CDS	30063374	30063937	.	+	1	Parent=Os04t0594800-01
Chr04	irgsp1_rep	CDS	30064032	30064284	.	+	1	Parent=Os04t0594800-01
Chr04	irgsp1_rep	CDS	30064376	30064558	.	+	0	Parent=Os04t0594800-01
Chr04	irgsp1_rep	CDS	30064639	30065265	.	+	0	Parent=Os04t0594800-01
Chr04	irgsp1_rep	three_prime_UTR	30065266	30065569	.	+	.	Parent=Os04t0594800-01
Chr04	irgsp1_rep	mRNA	30062549	30065258	.	-	.	ID=Os04t0595125-00;Name=Os04t0595125-00;Locus_id=Os04g0595125;Note=Hypothetical protein.;Transcript_evidence=tplb0043k02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0595125-00
Chr04	irgsp1_rep	five_prime_UTR	30064632	30065258	.	-	.	Parent=Os04t0595125-00
Chr04	irgsp1_rep	five_prime_UTR	30064344	30064549	.	-	.	Parent=Os04t0595125-00
Chr04	irgsp1_rep	five_prime_UTR	30064113	30064248	.	-	.	Parent=Os04t0595125-00
Chr04	irgsp1_rep	CDS	30064072	30064112	.	-	0	Parent=Os04t0595125-00
Chr04	irgsp1_rep	CDS	30063384	30063945	.	-	1	Parent=Os04t0595125-00
Chr04	irgsp1_rep	CDS	30063168	30063296	.	-	0	Parent=Os04t0595125-00
Chr04	irgsp1_rep	CDS	30062821	30063066	.	-	0	Parent=Os04t0595125-00
Chr04	irgsp1_rep	CDS	30062549	30062725	.	-	0	Parent=Os04t0595125-00
Chr04	irgsp1_rep	mRNA	30065661	30065880	.	-	.	ID=Os04t0595450-00;Name=Os04t0595450-00;Locus_id=Os04g0595450;Note=Hypothetical conserved gene.;Transcript_evidence=EU943492 (DDBJ);ORF_evidence=B6TW49 (UniProt);TENOR=Os04t0595450-00;KEGG=Os04t0595450-00
Chr04	irgsp1_rep	five_prime_UTR	30065831	30065880	.	-	.	Parent=Os04t0595450-00
Chr04	irgsp1_rep	CDS	30065675	30065830	.	-	0	Parent=Os04t0595450-00
Chr04	irgsp1_rep	three_prime_UTR	30065661	30065674	.	-	.	Parent=Os04t0595450-00
Chr04	irgsp1_rep	mRNA	30074810	30075061	.	-	.	ID=Os04t0595583-00;Name=Os04t0595583-00;Locus_id=Os04g0595583;Note=Conserved hypothetical protein.;Transcript_evidence=EU943442 (DDBJ);ORF_evidence=XP_002321824.1 (RefSeq);TENOR=Os04t0595583-00
Chr04	irgsp1_rep	five_prime_UTR	30075043	30075061	.	-	.	Parent=Os04t0595583-00
Chr04	irgsp1_rep	CDS	30074941	30075042	.	-	0	Parent=Os04t0595583-00
Chr04	irgsp1_rep	three_prime_UTR	30074810	30074940	.	-	.	Parent=Os04t0595583-00
Chr04	irgsp1_rep	mRNA	30075470	30077026	.	+	.	ID=Os04t0596200-01;Name=Os04t0596200-01;Locus_id=Os04g0596200;CGSNL Gene Symbol=AP38;CGSNL Gene Name=ASPARTIC PROTEASE 38;Oryzabase Gene Symbol Synonym(s)=OsAP38;Oryzabase Gene Name Synonym(s)=aspartic protease 38;Note=Peptidase A1 domain containing protein.;Transcript_evidence=AK106907 (DDBJ%2C Best hit);ORF_evidence=Q01HF7 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=002-119-A03;Oryzabase=23524;Expression=AK106907;TENOR=Os04t0596200-01;KEGG=Os04t0596200-01
Chr04	irgsp1_rep	five_prime_UTR	30075470	30075471	.	+	.	Parent=Os04t0596200-01
Chr04	irgsp1_rep	CDS	30075472	30076887	.	+	0	Parent=Os04t0596200-01
Chr04	irgsp1_rep	three_prime_UTR	30076888	30077026	.	+	.	Parent=Os04t0596200-01
Chr04	irgsp1_rep	mRNA	30077624	30080383	.	-	.	ID=Os04t0596300-01;Name=Os04t0596300-01;Locus_id=Os04g0596300;Note=Protein of unknown function DUF760 family protein.;Transcript_evidence=AK067781 (DDBJ%2C Best hit);ORF_evidence=Q7X6P4 (UniProt);InterPro=Protein of unknown function DUF760 (IPR008479);NIAS_FLcDNA=J013120J11;Expression=AK067781;TENOR=Os04t0596300-01;KEGG=Os04t0596300-01
Chr04	irgsp1_rep	five_prime_UTR	30080298	30080383	.	-	.	Parent=Os04t0596300-01
Chr04	irgsp1_rep	CDS	30080157	30080297	.	-	0	Parent=Os04t0596300-01
Chr04	irgsp1_rep	CDS	30078874	30079151	.	-	0	Parent=Os04t0596300-01
Chr04	irgsp1_rep	CDS	30077755	30078553	.	-	1	Parent=Os04t0596300-01
Chr04	irgsp1_rep	three_prime_UTR	30077624	30077754	.	-	.	Parent=Os04t0596300-01
Chr04	irgsp1_rep	mRNA	30078196	30080382	.	-	.	ID=Os04t0596300-02;Name=Os04t0596300-02;Locus_id=Os04g0596300;Note=Similar to predicted protein.;Transcript_evidence=AK068754 (DDBJ%2C Best hit);ORF_evidence=Q7X6P4 (UniProt);InterPro=Protein of unknown function DUF760 (IPR008479);NIAS_FLcDNA=J013159J09;Expression=AK068754;TENOR=Os04t0596300-02;KEGG=Os04t0596300-02
Chr04	irgsp1_rep	five_prime_UTR	30079170	30080382	.	-	.	Parent=Os04t0596300-02
Chr04	irgsp1_rep	CDS	30078870	30079169	.	-	0	Parent=Os04t0596300-02
Chr04	irgsp1_rep	three_prime_UTR	30078196	30078869	.	-	.	Parent=Os04t0596300-02
Chr04	irgsp1_rep	mRNA	30077754	30078558	.	+	.	ID=Os04t0596350-00;Name=Os04t0596350-00;Locus_id=Os04g0596350;Note=Non-protein coding transcript.;Transcript_evidence=tplb0028e15 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os04t0596350-00
Chr04	irgsp1_rep	exon	30077754	30078558	.	+	.	Parent=Os04t0596350-00
Chr04	irgsp1_rep	mRNA	30081085	30084173	.	-	.	ID=Os04t0596400-01;Name=Os04t0596400-01;Locus_id=Os04g0596400;Note=Similar to UPF0195 protein CG30152.;Transcript_evidence=AK068599 (DDBJ%2C Best hit);ORF_evidence=NP_001154457.1 (RefSeq);InterPro=Domain of unknown function DUF59 (IPR002744);NIAS_FLcDNA=J013152P20;Expression=AK068599;TENOR=Os04t0596400-01;KEGG=Os04t0596400-01
Chr04	irgsp1_rep	five_prime_UTR	30084124	30084173	.	-	.	Parent=Os04t0596400-01
Chr04	irgsp1_rep	five_prime_UTR	30083124	30083167	.	-	.	Parent=Os04t0596400-01
Chr04	irgsp1_rep	CDS	30082998	30083123	.	-	0	Parent=Os04t0596400-01
Chr04	irgsp1_rep	CDS	30082773	30082876	.	-	0	Parent=Os04t0596400-01
Chr04	irgsp1_rep	CDS	30082588	30082687	.	-	1	Parent=Os04t0596400-01
Chr04	irgsp1_rep	CDS	30081667	30081712	.	-	0	Parent=Os04t0596400-01
Chr04	irgsp1_rep	CDS	30081474	30081574	.	-	2	Parent=Os04t0596400-01
Chr04	irgsp1_rep	three_prime_UTR	30081085	30081473	.	-	.	Parent=Os04t0596400-01
Chr04	irgsp1_rep	mRNA	30090962	30096719	.	-	.	ID=Os04t0596500-01;Name=Os04t0596500-01;Locus_id=Os04g0596500;Note=Non-protein coding transcript.;Transcript_evidence=AK071616 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023105I09;TENOR=Os04t0596500-01
Chr04	irgsp1_rep	exon	30096456	30096719	.	-	.	Parent=Os04t0596500-01
Chr04	irgsp1_rep	exon	30096132	30096310	.	-	.	Parent=Os04t0596500-01
Chr04	irgsp1_rep	exon	30091516	30091638	.	-	.	Parent=Os04t0596500-01
Chr04	irgsp1_rep	exon	30090962	30091395	.	-	.	Parent=Os04t0596500-01
Chr04	irgsp1_rep	mRNA	30085471	30093452	.	-	.	ID=Os04t0596500-02;Name=Os04t0596500-02;Locus_id=Os04g0596500;Note=Translation elongation factor EFTu/EF1A%2C C-terminal domain containing protein.;Transcript_evidence=AK100658 (DDBJ%2C Best hit);ORF_evidence=Q7X864 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525),Molecular Function: zinc ion binding (GO:0008270);InterPro=Protein synthesis factor%2C GTP-binding (IPR000795),Zinc finger%2C RanBP2-type (IPR001876),Translation elongation factor EFTu/EF1A%2C C-terminal (IPR004160),Translation elongation factor EFTu/EF1A%2C domain 2 (IPR004161),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Translation elongation factor EF1A/initiation factor IF2gamma%2C C-terminal (IPR009001);NIAS_FLcDNA=J023111K09;Expression=AK100658;TENOR=Os04t0596500-02;KEGG=Os04t0596500-02
Chr04	irgsp1_rep	five_prime_UTR	30093210	30093452	.	-	.	Parent=Os04t0596500-02
Chr04	irgsp1_rep	five_prime_UTR	30091516	30091638	.	-	.	Parent=Os04t0596500-02
Chr04	irgsp1_rep	five_prime_UTR	30090045	30090065	.	-	.	Parent=Os04t0596500-02
Chr04	irgsp1_rep	CDS	30089906	30090044	.	-	0	Parent=Os04t0596500-02
Chr04	irgsp1_rep	CDS	30088936	30089085	.	-	2	Parent=Os04t0596500-02
Chr04	irgsp1_rep	CDS	30088700	30088834	.	-	2	Parent=Os04t0596500-02
Chr04	irgsp1_rep	CDS	30088178	30088230	.	-	2	Parent=Os04t0596500-02
Chr04	irgsp1_rep	CDS	30087899	30088105	.	-	0	Parent=Os04t0596500-02
Chr04	irgsp1_rep	CDS	30087678	30087788	.	-	0	Parent=Os04t0596500-02
Chr04	irgsp1_rep	CDS	30087091	30087590	.	-	0	Parent=Os04t0596500-02
Chr04	irgsp1_rep	CDS	30086629	30086797	.	-	1	Parent=Os04t0596500-02
Chr04	irgsp1_rep	CDS	30086121	30086360	.	-	0	Parent=Os04t0596500-02
Chr04	irgsp1_rep	CDS	30085917	30086048	.	-	0	Parent=Os04t0596500-02
Chr04	irgsp1_rep	CDS	30085696	30085830	.	-	0	Parent=Os04t0596500-02
Chr04	irgsp1_rep	three_prime_UTR	30085471	30085695	.	-	.	Parent=Os04t0596500-02
Chr04	irgsp1_rep	mRNA	30107310	30108889	.	-	.	ID=Os04t0596900-00;Name=Os04t0596900-00;Locus_id=Os04g0596900;Note=Phosphoribulokinase/uridine kinase family protein.;Transcript_evidence=AK367369 (DDBJ);ORF_evidence=A2XX29 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: metabolic process (GO:0008152),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphoribulokinase activity (GO:0008974),Molecular Function: kinase activity (GO:0016301);InterPro=Phosphoribulokinase (IPR006082),Phosphoribulokinase/uridine kinase (IPR006083);TENOR=Os04t0596900-00;KEGG=Os04t0596900-00 (EC:2.7.1.48)
Chr04	irgsp1_rep	CDS	30108363	30108889	.	-	0	Parent=Os04t0596900-00
Chr04	irgsp1_rep	CDS	30108174	30108258	.	-	1	Parent=Os04t0596900-00
Chr04	irgsp1_rep	CDS	30107993	30108077	.	-	0	Parent=Os04t0596900-00
Chr04	irgsp1_rep	CDS	30107646	30107902	.	-	2	Parent=Os04t0596900-00
Chr04	irgsp1_rep	CDS	30107310	30107564	.	-	0	Parent=Os04t0596900-00
Chr04	irgsp1_rep	mRNA	30110090	30113613	.	-	.	ID=Os04t0597000-01;Name=Os04t0597000-01;Locus_id=Os04g0597000;Note=Similar to Secretory carrier membrane protein.;Transcript_evidence=AK120076 (DDBJ%2C Best hit);ORF_evidence=Q0JAI9 (UniProt);GO=Biological Process: protein transport (GO:0015031),Cellular Component: integral to membrane (GO:0016021);InterPro=SCAMP (IPR007273);NIAS_FLcDNA=J013010M02;Expression=AK120076;TENOR=Os04t0597000-01;KEGG=Os04t0597000-01
Chr04	irgsp1_rep	five_prime_UTR	30113479	30113613	.	-	.	Parent=Os04t0597000-01
Chr04	irgsp1_rep	CDS	30113422	30113478	.	-	0	Parent=Os04t0597000-01
Chr04	irgsp1_rep	CDS	30113144	30113269	.	-	0	Parent=Os04t0597000-01
Chr04	irgsp1_rep	CDS	30112977	30113039	.	-	0	Parent=Os04t0597000-01
Chr04	irgsp1_rep	CDS	30112855	30112888	.	-	0	Parent=Os04t0597000-01
Chr04	irgsp1_rep	CDS	30112626	30112748	.	-	2	Parent=Os04t0597000-01
Chr04	irgsp1_rep	CDS	30112384	30112446	.	-	2	Parent=Os04t0597000-01
Chr04	irgsp1_rep	CDS	30112208	30112301	.	-	2	Parent=Os04t0597000-01
Chr04	irgsp1_rep	CDS	30111858	30111903	.	-	1	Parent=Os04t0597000-01
Chr04	irgsp1_rep	CDS	30111688	30111755	.	-	0	Parent=Os04t0597000-01
Chr04	irgsp1_rep	CDS	30111477	30111525	.	-	1	Parent=Os04t0597000-01
Chr04	irgsp1_rep	CDS	30111257	30111322	.	-	0	Parent=Os04t0597000-01
Chr04	irgsp1_rep	CDS	30110401	30110433	.	-	0	Parent=Os04t0597000-01
Chr04	irgsp1_rep	three_prime_UTR	30110090	30110400	.	-	.	Parent=Os04t0597000-01
Chr04	irgsp1_rep	mRNA	30109980	30113588	.	-	.	ID=Os04t0597000-02;Name=Os04t0597000-02;Locus_id=Os04g0597000;Note=Similar to Secretory carrier membrane protein.;Transcript_evidence=AK058642 (DDBJ%2C Best hit);ORF_evidence=Q0JAI9 (UniProt);GO=Biological Process: protein transport (GO:0015031),Cellular Component: integral to membrane (GO:0016021);InterPro=SCAMP (IPR007273);NIAS_FLcDNA=001-018-E05;Expression=AK058642;TENOR=Os04t0597000-02;KEGG=Os04t0597000-02
Chr04	irgsp1_rep	five_prime_UTR	30113479	30113588	.	-	.	Parent=Os04t0597000-02
Chr04	irgsp1_rep	CDS	30113422	30113478	.	-	0	Parent=Os04t0597000-02
Chr04	irgsp1_rep	CDS	30113144	30113269	.	-	0	Parent=Os04t0597000-02
Chr04	irgsp1_rep	CDS	30112977	30113039	.	-	0	Parent=Os04t0597000-02
Chr04	irgsp1_rep	CDS	30112855	30112888	.	-	0	Parent=Os04t0597000-02
Chr04	irgsp1_rep	CDS	30112626	30112748	.	-	2	Parent=Os04t0597000-02
Chr04	irgsp1_rep	CDS	30112384	30112446	.	-	2	Parent=Os04t0597000-02
Chr04	irgsp1_rep	CDS	30112208	30112301	.	-	2	Parent=Os04t0597000-02
Chr04	irgsp1_rep	CDS	30111858	30111903	.	-	1	Parent=Os04t0597000-02
Chr04	irgsp1_rep	CDS	30111688	30111755	.	-	0	Parent=Os04t0597000-02
Chr04	irgsp1_rep	CDS	30111477	30111525	.	-	1	Parent=Os04t0597000-02
Chr04	irgsp1_rep	CDS	30111257	30111322	.	-	0	Parent=Os04t0597000-02
Chr04	irgsp1_rep	CDS	30110401	30110433	.	-	0	Parent=Os04t0597000-02
Chr04	irgsp1_rep	three_prime_UTR	30109980	30110400	.	-	.	Parent=Os04t0597000-02
Chr04	irgsp1_rep	mRNA	30133144	30136547	.	+	.	ID=Os04t0597300-01;Name=Os04t0597300-01;Locus_id=Os04g0597300;CGSNL Gene Symbol=WRKY37;CGSNL Gene Name=WRKY GENE 37;Oryzabase Gene Symbol Synonym(s)=OsWRKY37;Oryzabase Gene Name Synonym(s)=Rice WRKY gene37;Note=Similar to WERKY protein (Fragment).;Transcript_evidence=AK110912 (DDBJ%2C Best hit);ORF_evidence=Q7XNU9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);NIAS_FLcDNA=002-173-C03;Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6550;Expression=AK110912;TENOR=Os04t0597300-01;KEGG=Os04t0597300-01
Chr04	irgsp1_rep	five_prime_UTR	30133144	30133162	.	+	.	Parent=Os04t0597300-01
Chr04	irgsp1_rep	CDS	30133163	30133518	.	+	0	Parent=Os04t0597300-01
Chr04	irgsp1_rep	CDS	30133768	30133818	.	+	1	Parent=Os04t0597300-01
Chr04	irgsp1_rep	CDS	30134482	30134622	.	+	1	Parent=Os04t0597300-01
Chr04	irgsp1_rep	CDS	30135581	30136277	.	+	1	Parent=Os04t0597300-01
Chr04	irgsp1_rep	three_prime_UTR	30136278	30136547	.	+	.	Parent=Os04t0597300-01
Chr04	irgsp1_rep	mRNA	30145192	30146641	.	+	.	ID=Os04t0597400-00;Name=Os04t0597400-00;Locus_id=Os04g0597400;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Similar to OSJNba0093F12.10 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XNU8 (UniProt);Oryzabase=23656;TENOR=Os04t0597400-00
Chr04	irgsp1_rep	CDS	30145192	30145263	.	+	0	Parent=Os04t0597400-00
Chr04	irgsp1_rep	CDS	30145817	30145925	.	+	0	Parent=Os04t0597400-00
Chr04	irgsp1_rep	CDS	30146403	30146641	.	+	2	Parent=Os04t0597400-00
Chr04	irgsp1_rep	mRNA	30146665	30148289	.	+	.	ID=Os04t0597501-00;Name=Os04t0597501-00;Locus_id=Os04g0597501;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Similar to OSJNba0093F12.10 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XNU8 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);Oryzabase=23656;TENOR=Os04t0597501-00;KEGG=Os04t0597501-00
Chr04	irgsp1_rep	CDS	30146665	30147287	.	+	0	Parent=Os04t0597501-00
Chr04	irgsp1_rep	CDS	30147365	30148154	.	+	1	Parent=Os04t0597501-00
Chr04	irgsp1_rep	CDS	30148227	30148289	.	+	0	Parent=Os04t0597501-00
Chr04	irgsp1_rep	mRNA	30146691	30148154	.	-	.	ID=Os04t0597534-00;Name=Os04t0597534-00;Locus_id=Os04g0597534;Note=Hypothetical protein.;Transcript_evidence=tplb0038k08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0597534-00
Chr04	irgsp1_rep	CDS	30147375	30148154	.	-	0	Parent=Os04t0597534-00
Chr04	irgsp1_rep	CDS	30147171	30147314	.	-	0	Parent=Os04t0597534-00
Chr04	irgsp1_rep	three_prime_UTR	30146691	30147170	.	-	.	Parent=Os04t0597534-00
Chr04	irgsp1_rep	mRNA	30156252	30159194	.	+	.	ID=Os04t0597600-01;Name=Os04t0597600-01;Locus_id=Os04g0597600;RAP-DB Gene Symbol Synonym(s)=OsNPF7.4b%2C OsNPF7.4;CGSNL Gene Symbol=PTR5;CGSNL Gene Name=PROTEIN TRANSPORTER 5;Oryzabase Gene Symbol Synonym(s)=OsPTR5%2C OsNPF7.4%2C NPF7.4;Oryzabase Gene Name Synonym(s)=NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 7.4;Note=Nitrate transporter%2C Regulation of tiller number and grain yield;Transcript_evidence=AK070216;ORF_evidence=Q0JAI6;GO=Biological Process: transmembrane transport (GO:0055085),Molecular Function: transmembrane transporter activity (GO:0022857),Cellular Component: membrane (GO:0016020);InterPro=MFS transporter superfamily (IPR036259),Proton-dependent oligopeptide transporter family (IPR000109);NIAS_FLcDNA=J023045E19;Manual Curation=August 7%2C 2019;Literature_PMID=31128693;Oryzabase=8913;Expression=AK070216;TENOR=Os04t0597600-01;KEGG=Os04t0597600-01
Chr04	irgsp1_rep	five_prime_UTR	30156252	30157189	.	+	.	Parent=Os04t0597600-01
Chr04	irgsp1_rep	CDS	30157190	30158902	.	+	0	Parent=Os04t0597600-01
Chr04	irgsp1_rep	three_prime_UTR	30158903	30159194	.	+	.	Parent=Os04t0597600-01
Chr04	irgsp1_rep	mRNA	30156252	30159310	.	+	.	ID=Os04t0597600-02;Name=Os04t0597600-02;Locus_id=Os04g0597600;RAP-DB Gene Symbol Synonym(s)=OsNPF7.4a%2C OsNPF7.4;CGSNL Gene Symbol=PTR5;CGSNL Gene Name=PROTEIN TRANSPORTER 5;Oryzabase Gene Symbol Synonym(s)=OsPTR5%2C OsNPF7.4%2C NPF7.4;Oryzabase Gene Name Synonym(s)=NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 7.4;Note=Nitrate transporter%2C Regulation of tiller number and grain yield;Transcript_evidence=Inferred from literature;ORF_evidence=Q7XNU7;GO=Biological Process: transmembrane transport (GO:0055085),Molecular Function: transmembrane transporter activity (GO:0022857),Cellular Component: membrane (GO:0016020);InterPro=MFS transporter superfamily (IPR036259),Proton-dependent oligopeptide transporter family (IPR000109);Manual Curation=August 7%2C 2019;Literature_PMID=31128693;Oryzabase=8913
Chr04	irgsp1_rep	five_prime_UTR	30156252	30156380	.	+	.	Parent=Os04t0597600-02
Chr04	irgsp1_rep	CDS	30156381	30156428	.	+	0	Parent=Os04t0597600-02
Chr04	irgsp1_rep	CDS	30157223	30158902	.	+	0	Parent=Os04t0597600-02
Chr04	irgsp1_rep	three_prime_UTR	30158903	30159310	.	+	.	Parent=Os04t0597600-02
Chr04	irgsp1_rep	mRNA	30157065	30158978	.	-	.	ID=Os04t0597700-01;Name=Os04t0597700-01;Locus_id=Os04g0597700;Note=Hypothetical protein.;Transcript_evidence=AK105711 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-201-E10;Expression=AK105711;TENOR=Os04t0597700-01;KEGG=Os04t0597700-01
Chr04	irgsp1_rep	five_prime_UTR	30158329	30158978	.	-	.	Parent=Os04t0597700-01
Chr04	irgsp1_rep	CDS	30158050	30158328	.	-	0	Parent=Os04t0597700-01
Chr04	irgsp1_rep	three_prime_UTR	30157065	30158049	.	-	.	Parent=Os04t0597700-01
Chr04	irgsp1_rep	mRNA	30161452	30165436	.	+	.	ID=Os04t0597800-01;Name=Os04t0597800-01;Locus_id=Os04g0597800;CGSNL Gene Symbol=PTR6;CGSNL Gene Name=PROTEIN TRANSPORTER 6;Oryzabase Gene Symbol Synonym(s)=OsPTR6%2C OsNRT1%3B2%2C NRT1%3B2%2C OsNPF7.3%2C NPF7.3;Oryzabase Gene Name Synonym(s)=PTR/NRT1 transporter 6%2C nitrate transporter 1/peptide transporter family 7.3%2C PTR/NRT1 family 7.3%2C NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 7.3;Note=TGF-beta receptor%2C type I/II extracellular region family protein.;Transcript_evidence=AK101480 (DDBJ%2C Best hit);ORF_evidence=Q7XNU6 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J033041C01;Oryzabase=8914;Expression=AK101480;TENOR=Os04t0597800-01;KEGG=Os04t0597800-01
Chr04	irgsp1_rep	five_prime_UTR	30161452	30161680	.	+	.	Parent=Os04t0597800-01
Chr04	irgsp1_rep	CDS	30161681	30161731	.	+	0	Parent=Os04t0597800-01
Chr04	irgsp1_rep	CDS	30161903	30161965	.	+	0	Parent=Os04t0597800-01
Chr04	irgsp1_rep	CDS	30163513	30163821	.	+	0	Parent=Os04t0597800-01
Chr04	irgsp1_rep	CDS	30163912	30165270	.	+	0	Parent=Os04t0597800-01
Chr04	irgsp1_rep	three_prime_UTR	30165271	30165436	.	+	.	Parent=Os04t0597800-01
Chr04	irgsp1_rep	mRNA	30163647	30165241	.	-	.	ID=Os04t0597816-00;Name=Os04t0597816-00;Locus_id=Os04g0597816;Note=Hypothetical protein.;Transcript_evidence=tplb0058e01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0597816-00
Chr04	irgsp1_rep	five_prime_UTR	30164928	30165241	.	-	.	Parent=Os04t0597816-00
Chr04	irgsp1_rep	CDS	30164443	30164927	.	-	0	Parent=Os04t0597816-00
Chr04	irgsp1_rep	CDS	30164010	30164389	.	-	1	Parent=Os04t0597816-00
Chr04	irgsp1_rep	CDS	30163882	30163901	.	-	2	Parent=Os04t0597816-00
Chr04	irgsp1_rep	three_prime_UTR	30163647	30163881	.	-	.	Parent=Os04t0597816-00
Chr04	irgsp1_rep	mRNA	30167235	30171820	.	-	.	ID=Os04t0597866-01;Name=Os04t0597866-01;Locus_id=Os04g0597866;Note=Hypothetical gene.;Transcript_evidence=AK241038 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065059G21;TENOR=Os04t0597866-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	30171370	30171820	.	-	.	Parent=Os04t0597866-01
Chr04	irgsp1_rep	five_prime_UTR	30168584	30169884	.	-	.	Parent=Os04t0597866-01
Chr04	irgsp1_rep	five_prime_UTR	30168380	30168484	.	-	.	Parent=Os04t0597866-01
Chr04	irgsp1_rep	five_prime_UTR	30167903	30168263	.	-	.	Parent=Os04t0597866-01
Chr04	irgsp1_rep	CDS	30167579	30167902	.	-	0	Parent=Os04t0597866-01
Chr04	irgsp1_rep	CDS	30167235	30167465	.	-	0	Parent=Os04t0597866-01
Chr04	irgsp1_rep	mRNA	30167304	30168343	.	+	.	ID=Os04t0597900-00;Name=Os04t0597900-00;Locus_id=Os04g0597900;Note=Similar to OSJNba0093F12.13 protein.;Transcript_evidence=BT085568 (DDBJ);ORF_evidence=Q7XNU5 (UniProt);TENOR=Os04t0597900-00;KEGG=Os04t0597900-00
Chr04	irgsp1_rep	five_prime_UTR	30167304	30167351	.	+	.	Parent=Os04t0597900-00
Chr04	irgsp1_rep	CDS	30167352	30167465	.	+	0	Parent=Os04t0597900-00
Chr04	irgsp1_rep	CDS	30167579	30167734	.	+	0	Parent=Os04t0597900-00
Chr04	irgsp1_rep	CDS	30167831	30168343	.	+	0	Parent=Os04t0597900-00
Chr04	irgsp1_rep	mRNA	30172150	30174209	.	-	.	ID=Os04t0598000-01;Name=Os04t0598000-01;Locus_id=Os04g0598000;Note=Similar to OSJNba0093F12.14 protein.;Transcript_evidence=AK121673 (DDBJ%2C Best hit);ORF_evidence=Q7XNU4 (UniProt);NIAS_FLcDNA=J033068C09;Expression=AK121673;TENOR=Os04t0598000-01;KEGG=Os04t0598000-01
Chr04	irgsp1_rep	five_prime_UTR	30174041	30174209	.	-	.	Parent=Os04t0598000-01
Chr04	irgsp1_rep	CDS	30173955	30174040	.	-	0	Parent=Os04t0598000-01
Chr04	irgsp1_rep	CDS	30172407	30172680	.	-	1	Parent=Os04t0598000-01
Chr04	irgsp1_rep	three_prime_UTR	30172150	30172406	.	-	.	Parent=Os04t0598000-01
Chr04	irgsp1_rep	mRNA	30180330	30181981	.	+	.	ID=Os04t0598200-00;Name=Os04t0598200-00;Locus_id=Os04g0598200;Oryzabase Gene Symbol Synonym(s)=RPL12%2C RPL10%2C OsRPL12%2C OsRPL10;Oryzabase Gene Name Synonym(s)=Ribosomal protein L12%2C Ribosomal protein L10;Note=Similar to 60S ribosomal protein L12.;Transcript_evidence=CT837610 (DDBJ%2C Best hit);ORF_evidence=Q7XNU2 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L11 (IPR000911),Ribosomal protein L11%2C C-terminal (IPR020783),Ribosomal protein L11%2C N-terminal (IPR020784),Ribosomal protein L11%2C conserved site (IPR020785);Oryzabase=17657;TENOR=Os04t0598200-00;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	30180330	30180413	.	+	.	Parent=Os04t0598200-00
Chr04	irgsp1_rep	CDS	30180414	30180914	.	+	0	Parent=Os04t0598200-00
Chr04	irgsp1_rep	three_prime_UTR	30180915	30180917	.	+	.	Parent=Os04t0598200-00
Chr04	irgsp1_rep	three_prime_UTR	30181758	30181981	.	+	.	Parent=Os04t0598200-00
Chr04	irgsp1_rep	mRNA	30182589	30185852	.	-	.	ID=Os04t0598300-01;Name=Os04t0598300-01;Locus_id=Os04g0598300;RAP-DB Gene Symbol Synonym(s)=RFL%2C RFL%2C OSL%2C FL%2C APO2%2C APO2/RFL;RAP-DB Gene Name Synonym(s)=FLO-LFY HOMOLOG OF RICE%2C Rice LFY-like gene%2C Probable transcription factor FL%2C RICE FLORICAULA%2C ABERRANT PANICLE ORGANIZATION 2;CGSNL Gene Symbol=RFL;CGSNL Gene Name=FLO-LFY HOMOLOG OF RICE;Oryzabase Gene Symbol Synonym(s)=RFL%2C OSL%2C FL%2C APO2%2C APO2/RFL%2C SSC%2C SSC/RFL/APO2%2C OsRFL%2C OsFL%2C OsAPO2%2C OsSSC;Oryzabase Gene Name Synonym(s)=Rice LFY-like gene%2C Probable transcription factor FL%2C RICE FLORICAULA%2C ABERRANT PANICLE ORGANIZATION 2%2C RFL/ABERRANT PANICLE ORGANIZATION 2%2C SHORT and SOLID CULM;Note=Probable transcription factor%2C Control of inflorescence%2C Flower development;Transcript_evidence=AB005620 (Toride);ORF_evidence=Q0JAI1;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Floricaula/leafy protein (IPR002910);Manual Curation=March 25%2C 2015;Literature_PMID=21910771,9482818;Oryzabase=2987;TENOR=Os04t0598300-00
Chr04	irgsp1_rep	five_prime_UTR	30185780	30185852	.	-	.	Parent=Os04t0598300-01
Chr04	irgsp1_rep	CDS	30185374	30185779	.	-	0	Parent=Os04t0598300-01
Chr04	irgsp1_rep	CDS	30184748	30185157	.	-	2	Parent=Os04t0598300-01
Chr04	irgsp1_rep	CDS	30182839	30183192	.	-	0	Parent=Os04t0598300-01
Chr04	irgsp1_rep	three_prime_UTR	30182589	30182838	.	-	.	Parent=Os04t0598300-01
Chr04	irgsp1_rep	mRNA	30195971	30200680	.	-	.	ID=Os04t0598500-01;Name=Os04t0598500-01;Locus_id=Os04g0598500;Note=Similar to Wall-associated kinase-like protein.;Transcript_evidence=AK111909 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033079C23;Expression=AK111909;TENOR=Os04t0598500-01;KEGG=Os04t0598500-01
Chr04	irgsp1_rep	five_prime_UTR	30197028	30200680	.	-	.	Parent=Os04t0598500-01
Chr04	irgsp1_rep	CDS	30196728	30197027	.	-	0	Parent=Os04t0598500-01
Chr04	irgsp1_rep	three_prime_UTR	30195971	30196727	.	-	.	Parent=Os04t0598500-01
Chr04	irgsp1_rep	mRNA	30197241	30199248	.	-	.	ID=Os04t0598500-02;Name=Os04t0598500-02;Locus_id=Os04g0598500;Note=Non-protein coding transcript.;Transcript_evidence=AK289034 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090091G16;TENOR=Os04t0598500-02
Chr04	irgsp1_rep	exon	30197241	30199248	.	-	.	Parent=Os04t0598500-02
Chr04	irgsp1_rep	mRNA	30196157	30200231	.	+	.	ID=Os04t0598600-00;Name=Os04t0598600-00;Locus_id=Os04g0598600;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK368238 (DDBJ);ORF_evidence=B9FC97 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os04t0598600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	30196157	30196943	.	+	.	Parent=Os04t0598600-00
Chr04	irgsp1_rep	five_prime_UTR	30196997	30197253	.	+	.	Parent=Os04t0598600-00
Chr04	irgsp1_rep	five_prime_UTR	30197439	30197541	.	+	.	Parent=Os04t0598600-00
Chr04	irgsp1_rep	CDS	30197542	30197562	.	+	0	Parent=Os04t0598600-00
Chr04	irgsp1_rep	CDS	30198291	30198510	.	+	0	Parent=Os04t0598600-00
Chr04	irgsp1_rep	CDS	30199021	30200231	.	+	2	Parent=Os04t0598600-00
Chr04	irgsp1_rep	mRNA	30209131	30213639	.	+	.	ID=Os04t0598800-01;Name=Os04t0598800-01;Locus_id=Os04g0598800;Oryzabase Gene Name Synonym(s)=wall-associated receptor-like protein kinase%2C wall-associated RLK%2C WAK RLK;Note=Similar to Wall-associated kinase-like protein.;Transcript_evidence=AK111623 (DDBJ%2C Best hit);ORF_evidence=Q7XNT8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=EGF-type aspartate/asparagine hydroxylation site (IPR000152),Protein kinase%2C catalytic domain (IPR000719),Epidermal growth factor-like%2C type 3 (IPR000742),EGF-like calcium-binding (IPR001881),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EGF-like calcium-binding%2C conserved site (IPR018097),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013108G17;Oryzabase=21928;TENOR=Os04t0598800-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	30209131	30209160	.	+	.	Parent=Os04t0598800-01
Chr04	irgsp1_rep	CDS	30209161	30210142	.	+	0	Parent=Os04t0598800-01
Chr04	irgsp1_rep	CDS	30210358	30210516	.	+	2	Parent=Os04t0598800-01
Chr04	irgsp1_rep	CDS	30212069	30212233	.	+	2	Parent=Os04t0598800-01
Chr04	irgsp1_rep	CDS	30212754	30213639	.	+	2	Parent=Os04t0598800-01
Chr04	irgsp1_rep	mRNA	30215063	30217691	.	-	.	ID=Os04t0598900-01;Name=Os04t0598900-01;Locus_id=Os04g0598900;CGSNL Gene Symbol=WAK50;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 50;Oryzabase Gene Symbol Synonym(s)=OsWAK50;Note=Similar to Wall-associated kinase-like protein.;Transcript_evidence=AK111730 (DDBJ%2C Best hit);ORF_evidence=Q7XNT7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=EGF-type aspartate/asparagine hydroxylation site (IPR000152),Protein kinase%2C catalytic domain (IPR000719),Epidermal growth factor-like%2C type 3 (IPR000742),EGF-like calcium-binding (IPR001881),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),EGF-like region%2C conserved site (IPR013032),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EGF-like calcium-binding%2C conserved site (IPR018097);NIAS_FLcDNA=J023036D06;Oryzabase=8007;Expression=AK111730;TENOR=Os04t0598900-01;KEGG=Os04t0598900-01
Chr04	irgsp1_rep	five_prime_UTR	30217646	30217691	.	-	.	Parent=Os04t0598900-01
Chr04	irgsp1_rep	CDS	30216766	30217645	.	-	0	Parent=Os04t0598900-01
Chr04	irgsp1_rep	CDS	30216500	30216659	.	-	2	Parent=Os04t0598900-01
Chr04	irgsp1_rep	CDS	30215139	30216381	.	-	1	Parent=Os04t0598900-01
Chr04	irgsp1_rep	three_prime_UTR	30215063	30215138	.	-	.	Parent=Os04t0598900-01
Chr04	irgsp1_rep	mRNA	30220289	30223988	.	-	.	ID=Os04t0599000-01;Name=Os04t0599000-01;Locus_id=Os04g0599000;CGSNL Gene Symbol=WAK53;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 53;Oryzabase Gene Symbol Synonym(s)=OsWAK53%2C OsWAK53a;Note=Similar to WAK53a - OsWAK receptor-like protein kinase.;Transcript_evidence=AK111662 (DDBJ%2C Best hit);ORF_evidence=XP_002464142.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021),Molecular Function: protein serine/threonine kinase activity (GO:0004674);InterPro=Concanavalin A-like lectin/glucanase (IPR008985),Wall-associated kinase (IPR013695);NIAS_FLcDNA=J013153M19;Oryzabase=6948;Expression=AK111662;TENOR=Os04t0599000-01;KEGG=Os04t0599000-01
Chr04	irgsp1_rep	five_prime_UTR	30223016	30223988	.	-	.	Parent=Os04t0599000-01
Chr04	irgsp1_rep	CDS	30222062	30223015	.	-	0	Parent=Os04t0599000-01
Chr04	irgsp1_rep	three_prime_UTR	30220289	30222061	.	-	.	Parent=Os04t0599000-01
Chr04	irgsp1_rep	mRNA	30220296	30223167	.	-	.	ID=Os04t0599000-02;Name=Os04t0599000-02;Locus_id=Os04g0599000;CGSNL Gene Symbol=WAK53;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 53;Oryzabase Gene Symbol Synonym(s)=OsWAK53%2C OsWAK53a;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK111508 (DDBJ%2C Best hit);ORF_evidence=Q7FAF6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=EGF-type aspartate/asparagine hydroxylation site (IPR000152),Protein kinase%2C catalytic domain (IPR000719),Epidermal growth factor-like%2C type 3 (IPR000742),EGF-like calcium-binding (IPR001881),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EGF-like calcium-binding%2C conserved site (IPR018097);NIAS_FLcDNA=J013001F05;Oryzabase=6948;Expression=AK111508;TENOR=Os04t0599000-02;KEGG=Os04t0599000-02
Chr04	irgsp1_rep	five_prime_UTR	30223016	30223167	.	-	.	Parent=Os04t0599000-02
Chr04	irgsp1_rep	CDS	30222160	30223015	.	-	0	Parent=Os04t0599000-02
Chr04	irgsp1_rep	CDS	30221897	30222049	.	-	2	Parent=Os04t0599000-02
Chr04	irgsp1_rep	CDS	30220644	30221773	.	-	2	Parent=Os04t0599000-02
Chr04	irgsp1_rep	three_prime_UTR	30220296	30220643	.	-	.	Parent=Os04t0599000-02
Chr04	irgsp1_rep	mRNA	30224488	30230472	.	-	.	ID=Os04t0599100-01;Name=Os04t0599100-01;Locus_id=Os04g0599100;Note=Similar to OSJNba0093F12.23 protein.;Transcript_evidence=AK072303 (DDBJ%2C Best hit);ORF_evidence=Q5JQR9 (UniProt);NIAS_FLcDNA=J023024H09;TENOR=Os04t0599100-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	30230144	30230472	.	-	.	Parent=Os04t0599100-01
Chr04	irgsp1_rep	CDS	30229877	30230143	.	-	0	Parent=Os04t0599100-01
Chr04	irgsp1_rep	three_prime_UTR	30229865	30229876	.	-	.	Parent=Os04t0599100-01
Chr04	irgsp1_rep	three_prime_UTR	30227082	30228097	.	-	.	Parent=Os04t0599100-01
Chr04	irgsp1_rep	three_prime_UTR	30224488	30226498	.	-	.	Parent=Os04t0599100-01
Chr04	irgsp1_rep	mRNA	30234814	30237883	.	+	.	ID=Os04t0599200-00;Name=Os04t0599200-00;Locus_id=Os04g0599200;Note=Non-protein coding transcript.;Transcript_evidence=AK358402 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0599200-00
Chr04	irgsp1_rep	exon	30234814	30234931	.	+	.	Parent=Os04t0599200-00
Chr04	irgsp1_rep	exon	30237469	30237551	.	+	.	Parent=Os04t0599200-00
Chr04	irgsp1_rep	exon	30237671	30237883	.	+	.	Parent=Os04t0599200-00
Chr04	irgsp1_rep	mRNA	30235422	30238854	.	-	.	ID=Os04t0599300-01;Name=Os04t0599300-01;Locus_id=Os04g0599300;RAP-DB Gene Symbol Synonym(s)=EAT1%2C OsbHLH141%2C EAT1/DTD1%2C bHLH141%2C DTD1%2C DTD;RAP-DB Gene Name Synonym(s)=ETERNAL TAPETUM 1%2C ETERNAL TAPETUM1%2C basic helix-loop-helix protein 141%2C DELAYED TAPETUM DEGENERATION 1%2C delayed tapetum degeneration;CGSNL Gene Symbol=EAT1;CGSNL Gene Name=ETERNAL TAPETUM 1;Oryzabase Gene Symbol Synonym(s)=OsEAT1%2C OsbHLH141%2C EAT1/DTD1%2C bHLH141%2C DTD1%2C DTD%2C DLN120%2C OsDLN120;Oryzabase Gene Name Synonym(s)=ETERNAL TAPETUM1%2C basic helix-loop-helix protein 141%2C DELAYED TAPETUM DEGENERATION 1%2C delayed tapetum degeneration%2C DLN repressor 120%2C DLN motif protein 120;Note=Basic helix-loop-helix transcription factor%2C Regulator of tapetal programmed cell death%2C Male reproductive development;Transcript_evidence=AK119509;ORF_evidence=Q7X8R0;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);NIAS_FLcDNA=001-134-F08;Manual Curation=July 2%2C 2015;Literature_PMID=23385589,23519457,24894043;Oryzabase=13452;Expression=AK119509;TENOR=Os04t0599300-01;KEGG=Os04t0599300-01
Chr04	irgsp1_rep	five_prime_UTR	30238624	30238854	.	-	.	Parent=Os04t0599300-01
Chr04	irgsp1_rep	five_prime_UTR	30237946	30237981	.	-	.	Parent=Os04t0599300-01
Chr04	irgsp1_rep	CDS	30237067	30237945	.	-	0	Parent=Os04t0599300-01
Chr04	irgsp1_rep	CDS	30235834	30236253	.	-	0	Parent=Os04t0599300-01
Chr04	irgsp1_rep	CDS	30235635	30235730	.	-	0	Parent=Os04t0599300-01
Chr04	irgsp1_rep	three_prime_UTR	30235422	30235634	.	-	.	Parent=Os04t0599300-01
Chr04	irgsp1_rep	mRNA	30241622	30246571	.	+	.	ID=Os04t0599400-01;Name=Os04t0599400-01;Locus_id=Os04g0599400;Note=Scramblase family protein.;Transcript_evidence=AK101885 (DDBJ%2C Best hit);ORF_evidence=Q7FAG0 (UniProt);InterPro=Scramblase (IPR005552);NIAS_FLcDNA=J033070L15;Expression=AK101885;TENOR=Os04t0599400-01;KEGG=Os04t0599400-01
Chr04	irgsp1_rep	five_prime_UTR	30241622	30241703	.	+	.	Parent=Os04t0599400-01
Chr04	irgsp1_rep	CDS	30241704	30242018	.	+	0	Parent=Os04t0599400-01
Chr04	irgsp1_rep	CDS	30242350	30242436	.	+	0	Parent=Os04t0599400-01
Chr04	irgsp1_rep	CDS	30242829	30242870	.	+	0	Parent=Os04t0599400-01
Chr04	irgsp1_rep	CDS	30242979	30243023	.	+	0	Parent=Os04t0599400-01
Chr04	irgsp1_rep	CDS	30244822	30244887	.	+	0	Parent=Os04t0599400-01
Chr04	irgsp1_rep	CDS	30244952	30245008	.	+	0	Parent=Os04t0599400-01
Chr04	irgsp1_rep	CDS	30245119	30245180	.	+	0	Parent=Os04t0599400-01
Chr04	irgsp1_rep	CDS	30245311	30245431	.	+	1	Parent=Os04t0599400-01
Chr04	irgsp1_rep	CDS	30245845	30245922	.	+	0	Parent=Os04t0599400-01
Chr04	irgsp1_rep	CDS	30246049	30246155	.	+	0	Parent=Os04t0599400-01
Chr04	irgsp1_rep	CDS	30246257	30246287	.	+	1	Parent=Os04t0599400-01
Chr04	irgsp1_rep	three_prime_UTR	30246288	30246571	.	+	.	Parent=Os04t0599400-01
Chr04	irgsp1_rep	mRNA	30249419	30263316	.	+	.	ID=Os04t0599650-00;Name=Os04t0599650-00;Locus_id=Os04g0599650;Note=DNA helicase%2C UvrD/REP type domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FCA3 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP-dependent DNA helicase activity (GO:0004003),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity (GO:0016787);InterPro=DNA helicase%2C UvrD/REP type (IPR000212),Tetratricopeptide-like helical (IPR011990),Helicase%2C superfamily 1%2C UvrD-related (IPR014016);TENOR=Os04t0599650-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	30249419	30249532	.	+	0	Parent=Os04t0599650-00
Chr04	irgsp1_rep	CDS	30250819	30251322	.	+	0	Parent=Os04t0599650-00
Chr04	irgsp1_rep	CDS	30251471	30252407	.	+	0	Parent=Os04t0599650-00
Chr04	irgsp1_rep	CDS	30253559	30253814	.	+	2	Parent=Os04t0599650-00
Chr04	irgsp1_rep	CDS	30253897	30254113	.	+	1	Parent=Os04t0599650-00
Chr04	irgsp1_rep	CDS	30254739	30254906	.	+	0	Parent=Os04t0599650-00
Chr04	irgsp1_rep	CDS	30255002	30255093	.	+	0	Parent=Os04t0599650-00
Chr04	irgsp1_rep	CDS	30255328	30255831	.	+	1	Parent=Os04t0599650-00
Chr04	irgsp1_rep	CDS	30257265	30258465	.	+	1	Parent=Os04t0599650-00
Chr04	irgsp1_rep	CDS	30258612	30258968	.	+	0	Parent=Os04t0599650-00
Chr04	irgsp1_rep	CDS	30259256	30259493	.	+	0	Parent=Os04t0599650-00
Chr04	irgsp1_rep	CDS	30260081	30262647	.	+	2	Parent=Os04t0599650-00
Chr04	irgsp1_rep	CDS	30262729	30262853	.	+	0	Parent=Os04t0599650-00
Chr04	irgsp1_rep	CDS	30263034	30263316	.	+	1	Parent=Os04t0599650-00
Chr04	irgsp1_rep	mRNA	30249437	30253906	.	-	.	ID=Os04t0599675-00;Name=Os04t0599675-00;Locus_id=Os04g0599675;Note=Non-protein coding transcript.;Transcript_evidence=tplb0021n22 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os04t0599675-00
Chr04	irgsp1_rep	exon	30253557	30253906	.	-	.	Parent=Os04t0599675-00
Chr04	irgsp1_rep	exon	30252722	30253036	.	-	.	Parent=Os04t0599675-00
Chr04	irgsp1_rep	exon	30252433	30252608	.	-	.	Parent=Os04t0599675-00
Chr04	irgsp1_rep	exon	30251468	30252102	.	-	.	Parent=Os04t0599675-00
Chr04	irgsp1_rep	exon	30250815	30251352	.	-	.	Parent=Os04t0599675-00
Chr04	irgsp1_rep	exon	30249437	30249528	.	-	.	Parent=Os04t0599675-00
Chr04	irgsp1_rep	mRNA	30264259	30267376	.	+	.	ID=Os04t0599700-01;Name=Os04t0599700-01;Locus_id=Os04g0599700;Note=Cobalamin (vitamin B12) biosynthesis CobW-like domain containing protein.;Transcript_evidence=AK065249 (DDBJ%2C Best hit);ORF_evidence=XP_002887826.1 (RefSeq);InterPro=Cobalamin (vitamin B12) biosynthesis CobW-like (IPR003495),Cobalamin (vitamin B12) biosynthesis CobW-like%2C C-terminal (IPR011629);NIAS_FLcDNA=J013002J04;Expression=AK065249;TENOR=Os04t0599700-01;KEGG=Os04t0599700-01
Chr04	irgsp1_rep	five_prime_UTR	30264259	30264299	.	+	.	Parent=Os04t0599700-01
Chr04	irgsp1_rep	CDS	30264300	30264551	.	+	0	Parent=Os04t0599700-01
Chr04	irgsp1_rep	CDS	30264956	30265021	.	+	0	Parent=Os04t0599700-01
Chr04	irgsp1_rep	CDS	30265204	30265384	.	+	0	Parent=Os04t0599700-01
Chr04	irgsp1_rep	CDS	30265492	30265688	.	+	2	Parent=Os04t0599700-01
Chr04	irgsp1_rep	CDS	30265847	30265897	.	+	0	Parent=Os04t0599700-01
Chr04	irgsp1_rep	CDS	30265979	30266070	.	+	0	Parent=Os04t0599700-01
Chr04	irgsp1_rep	CDS	30266181	30266248	.	+	1	Parent=Os04t0599700-01
Chr04	irgsp1_rep	CDS	30266514	30266599	.	+	2	Parent=Os04t0599700-01
Chr04	irgsp1_rep	CDS	30266719	30266823	.	+	0	Parent=Os04t0599700-01
Chr04	irgsp1_rep	CDS	30266993	30267130	.	+	0	Parent=Os04t0599700-01
Chr04	irgsp1_rep	three_prime_UTR	30267131	30267376	.	+	.	Parent=Os04t0599700-01
Chr04	irgsp1_rep	mRNA	30267833	30270707	.	+	.	ID=Os04t0599800-01;Name=Os04t0599800-01;Locus_id=Os04g0599800;Oryzabase Gene Symbol Synonym(s)=OsWD40-109%2C WD40-109%2C OsCDC20%2C CDC20;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK103675 (DDBJ%2C Best hit);ORF_evidence=NP_001151581.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J033136B14;Oryzabase=10790;Expression=AK103675;TENOR=Os04t0599800-01;KEGG=Os04t0599800-01
Chr04	irgsp1_rep	five_prime_UTR	30267833	30268391	.	+	.	Parent=Os04t0599800-01
Chr04	irgsp1_rep	CDS	30268392	30268532	.	+	0	Parent=Os04t0599800-01
Chr04	irgsp1_rep	CDS	30268619	30268891	.	+	0	Parent=Os04t0599800-01
Chr04	irgsp1_rep	CDS	30269018	30269287	.	+	0	Parent=Os04t0599800-01
Chr04	irgsp1_rep	CDS	30269383	30270213	.	+	0	Parent=Os04t0599800-01
Chr04	irgsp1_rep	three_prime_UTR	30270214	30270707	.	+	.	Parent=Os04t0599800-01
Chr04	irgsp1_rep	mRNA	30271225	30276241	.	+	.	ID=Os04t0599900-01;Name=Os04t0599900-01;Locus_id=Os04g0599900;Oryzabase Gene Name Synonym(s)=clathrin assenbly Enth domain protein;Note=Similar to ENTH1 protein (Fragment).;Transcript_evidence=AK067675 (DDBJ%2C Best hit);ORF_evidence=Q01HU7 (UniProt);InterPro=Epsin domain%2C N-terminal (IPR001026),ENTH/VHS (IPR008942),Epsin-like%2C N-terminal (IPR013809);NIAS_FLcDNA=J013118P18;Oryzabase=15983;Expression=AK067675;TENOR=Os04t0599900-01;KEGG=Os04t0599900-01
Chr04	irgsp1_rep	five_prime_UTR	30271225	30271546	.	+	.	Parent=Os04t0599900-01
Chr04	irgsp1_rep	CDS	30271547	30271587	.	+	0	Parent=Os04t0599900-01
Chr04	irgsp1_rep	CDS	30271709	30271760	.	+	1	Parent=Os04t0599900-01
Chr04	irgsp1_rep	CDS	30272407	30272486	.	+	0	Parent=Os04t0599900-01
Chr04	irgsp1_rep	CDS	30272918	30272996	.	+	1	Parent=Os04t0599900-01
Chr04	irgsp1_rep	CDS	30273168	30273251	.	+	0	Parent=Os04t0599900-01
Chr04	irgsp1_rep	CDS	30273355	30273500	.	+	0	Parent=Os04t0599900-01
Chr04	irgsp1_rep	CDS	30273607	30273825	.	+	1	Parent=Os04t0599900-01
Chr04	irgsp1_rep	CDS	30274179	30274270	.	+	1	Parent=Os04t0599900-01
Chr04	irgsp1_rep	CDS	30274676	30274866	.	+	2	Parent=Os04t0599900-01
Chr04	irgsp1_rep	CDS	30275099	30275705	.	+	0	Parent=Os04t0599900-01
Chr04	irgsp1_rep	CDS	30275810	30276003	.	+	2	Parent=Os04t0599900-01
Chr04	irgsp1_rep	three_prime_UTR	30276004	30276241	.	+	.	Parent=Os04t0599900-01
Chr04	irgsp1_rep	mRNA	30271253	30276282	.	+	.	ID=Os04t0599900-02;Name=Os04t0599900-02;Locus_id=Os04g0599900;Oryzabase Gene Name Synonym(s)=clathrin assenbly Enth domain protein;Note=Similar to ENTH1 protein (Fragment).;Transcript_evidence=AK121748 (DDBJ%2C Best hit);ORF_evidence=Q01HU7 (UniProt);InterPro=Epsin domain%2C N-terminal (IPR001026),ENTH/VHS (IPR008942),Epsin-like%2C N-terminal (IPR013809);NIAS_FLcDNA=J033087C14;Oryzabase=15983;Expression=AK121748;TENOR=Os04t0599900-02;KEGG=Os04t0599900-02
Chr04	irgsp1_rep	five_prime_UTR	30271253	30271546	.	+	.	Parent=Os04t0599900-02
Chr04	irgsp1_rep	CDS	30271547	30271587	.	+	0	Parent=Os04t0599900-02
Chr04	irgsp1_rep	CDS	30271709	30271760	.	+	1	Parent=Os04t0599900-02
Chr04	irgsp1_rep	CDS	30272407	30272486	.	+	0	Parent=Os04t0599900-02
Chr04	irgsp1_rep	CDS	30272918	30272996	.	+	1	Parent=Os04t0599900-02
Chr04	irgsp1_rep	CDS	30273168	30273251	.	+	0	Parent=Os04t0599900-02
Chr04	irgsp1_rep	CDS	30273355	30273500	.	+	0	Parent=Os04t0599900-02
Chr04	irgsp1_rep	CDS	30273607	30273825	.	+	1	Parent=Os04t0599900-02
Chr04	irgsp1_rep	CDS	30274179	30274270	.	+	1	Parent=Os04t0599900-02
Chr04	irgsp1_rep	CDS	30274676	30274866	.	+	2	Parent=Os04t0599900-02
Chr04	irgsp1_rep	CDS	30275099	30275705	.	+	0	Parent=Os04t0599900-02
Chr04	irgsp1_rep	CDS	30275810	30276003	.	+	2	Parent=Os04t0599900-02
Chr04	irgsp1_rep	three_prime_UTR	30276004	30276282	.	+	.	Parent=Os04t0599900-02
Chr04	irgsp1_rep	mRNA	30273450	30276241	.	+	.	ID=Os04t0599900-03;Name=Os04t0599900-03;Locus_id=Os04g0599900;Oryzabase Gene Name Synonym(s)=clathrin assenbly Enth domain protein;Note=Similar to B0403H10-OSIGBa0105A11.1 protein.;Transcript_evidence=AK059135 (DDBJ%2C Best hit);ORF_evidence=Q01HU7 (UniProt);NIAS_FLcDNA=001-022-H05;Oryzabase=15983;Expression=AK059135;TENOR=Os04t0599900-03;KEGG=Os04t0599900-03
Chr04	irgsp1_rep	five_prime_UTR	30273450	30273450	.	+	.	Parent=Os04t0599900-03
Chr04	irgsp1_rep	CDS	30273451	30273500	.	+	0	Parent=Os04t0599900-03
Chr04	irgsp1_rep	CDS	30273607	30273825	.	+	1	Parent=Os04t0599900-03
Chr04	irgsp1_rep	CDS	30274179	30274270	.	+	1	Parent=Os04t0599900-03
Chr04	irgsp1_rep	CDS	30274676	30274866	.	+	2	Parent=Os04t0599900-03
Chr04	irgsp1_rep	CDS	30275099	30275705	.	+	0	Parent=Os04t0599900-03
Chr04	irgsp1_rep	CDS	30275810	30276003	.	+	2	Parent=Os04t0599900-03
Chr04	irgsp1_rep	three_prime_UTR	30276004	30276241	.	+	.	Parent=Os04t0599900-03
Chr04	irgsp1_rep	mRNA	30282336	30284600	.	+	.	ID=Os04t0600000-01;Name=Os04t0600000-01;Locus_id=Os04g0600000;Note=Similar to Transfactor-like protein.;Transcript_evidence=AK106400 (DDBJ%2C Best hit);ORF_evidence=Q01HU6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=002-102-G05;Expression=AK106400;TENOR=Os04t0600000-01;KEGG=Os04t0600000-01
Chr04	irgsp1_rep	five_prime_UTR	30282336	30282555	.	+	.	Parent=Os04t0600000-01
Chr04	irgsp1_rep	CDS	30282556	30282691	.	+	0	Parent=Os04t0600000-01
Chr04	irgsp1_rep	CDS	30283103	30283179	.	+	2	Parent=Os04t0600000-01
Chr04	irgsp1_rep	CDS	30283286	30283369	.	+	0	Parent=Os04t0600000-01
Chr04	irgsp1_rep	three_prime_UTR	30283370	30283812	.	+	.	Parent=Os04t0600000-01
Chr04	irgsp1_rep	three_prime_UTR	30283905	30284600	.	+	.	Parent=Os04t0600000-01
Chr04	irgsp1_rep	mRNA	30284968	30286124	.	-	.	ID=Os04t0600100-01;Name=Os04t0600100-01;Locus_id=Os04g0600100;Note=Similar to B0403H10-OSIGBa0105A11.3 protein.;Transcript_evidence=AK072897 (DDBJ%2C Best hit);ORF_evidence=Q01HU5 (UniProt);NIAS_FLcDNA=J023147E21;TENOR=Os04t0600100-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	30285805	30286124	.	-	.	Parent=Os04t0600100-01
Chr04	irgsp1_rep	CDS	30285802	30285804	.	-	0	Parent=Os04t0600100-01
Chr04	irgsp1_rep	CDS	30285543	30285713	.	-	0	Parent=Os04t0600100-01
Chr04	irgsp1_rep	CDS	30285138	30285356	.	-	0	Parent=Os04t0600100-01
Chr04	irgsp1_rep	three_prime_UTR	30284968	30285137	.	-	.	Parent=Os04t0600100-01
Chr04	irgsp1_rep	mRNA	30287197	30289860	.	-	.	ID=Os04t0600200-01;Name=Os04t0600200-01;Locus_id=Os04g0600200;RAP-DB Gene Symbol Synonym(s)=AOX1A%2C Ao1-1%2C AOX1a%2C OsAOX1a%2C AOX 1a;RAP-DB Gene Name Synonym(s)=ALTERNATIVE OXIDASE 1A%2C alternative oxidase-1a;CGSNL Gene Symbol=AOX1A;CGSNL Gene Name=ALTERNATIVE OXIDASE 1A;Oryzabase Gene Symbol Synonym(s)=Ao1-1%2C AOX1a%2C OsAOX1a%2C AOX 1a;Oryzabase Gene Name Synonym(s)=alternative oxidase-1a%2C ubiquinol oxidase 1a;Note=Homodimeric diiron-carboxylate protein%2C Cyanide-resistant respiration in mitochondria%2C Reactive oxygen species (ROS) scavenging;Transcript_evidence=AK064040 (Genbank);ORF_evidence=O82807 (UniProt);GO=Biological Process: respiratory gaseous exchange (GO:0007585),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: mitochondrial envelope (GO:0005740);InterPro=Alternative oxidase (IPR002680);NIAS_FLcDNA=001-125-C12;Manual Curation=June 4%2C 2009;Literature_PMID=17086445,14503001,16457775;Oryzabase=8229;Expression=AK064040;TENOR=Os04t0600200-01;KEGG=Os04t0600200-01
Chr04	irgsp1_rep	five_prime_UTR	30289758	30289860	.	-	.	Parent=Os04t0600200-01
Chr04	irgsp1_rep	CDS	30289437	30289757	.	-	0	Parent=Os04t0600200-01
Chr04	irgsp1_rep	CDS	30289149	30289277	.	-	0	Parent=Os04t0600200-01
Chr04	irgsp1_rep	CDS	30287728	30288216	.	-	0	Parent=Os04t0600200-01
Chr04	irgsp1_rep	CDS	30287566	30287625	.	-	0	Parent=Os04t0600200-01
Chr04	irgsp1_rep	three_prime_UTR	30287197	30287565	.	-	.	Parent=Os04t0600200-01
Chr04	irgsp1_rep	mRNA	30291463	30293040	.	-	.	ID=Os04t0600300-01;Name=Os04t0600300-01;Locus_id=Os04g0600300;RAP-DB Gene Symbol Synonym(s)=AOX1B%2C AOX1b%2C OsAOX1b;RAP-DB Gene Name Synonym(s)=ALTERNATIVE OXIDASE 1B%2C alternative oxidase-1b;CGSNL Gene Symbol=AOX1B;CGSNL Gene Name=ALTERNATIVE OXIDASE 1B;Oryzabase Gene Symbol Synonym(s)=AOX1b%2C OsAOX1b;Oryzabase Gene Name Synonym(s)=alternative oxidase-1b;Note=Homodimeric diiron-carboxylate protein%2C Cyanide-resistant respiration in mitochondria%2C Reactive oxygen species (ROS) scavenging;Transcript_evidence=AK107376 (DDBJ);ORF_evidence=O82766 (UniProt);GO=Biological Process: respiratory gaseous exchange (GO:0007585),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: mitochondrial envelope (GO:0005740);InterPro=Alternative oxidase (IPR002680);NIAS_FLcDNA=002-127-B09;Manual Curation=June 5%2C 2009;Literature_PMID=17086445,14503001,16457775;Oryzabase=8230;TENOR=Os04t0600300-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	30292895	30293040	.	-	.	Parent=Os04t0600300-01
Chr04	irgsp1_rep	CDS	30292565	30292894	.	-	0	Parent=Os04t0600300-01
Chr04	irgsp1_rep	CDS	30291836	30292453	.	-	0	Parent=Os04t0600300-01
Chr04	irgsp1_rep	CDS	30291668	30291727	.	-	0	Parent=Os04t0600300-01
Chr04	irgsp1_rep	three_prime_UTR	30291463	30291667	.	-	.	Parent=Os04t0600300-01
Chr04	irgsp1_rep	mRNA	30294784	30297406	.	-	.	ID=Os04t0600400-01;Name=Os04t0600400-01;Locus_id=Os04g0600400;Note=Peptidase aspartic%2C catalytic domain containing protein.;Transcript_evidence=AK072894 (DDBJ%2C Best hit);ORF_evidence=Q01HU2 (UniProt);NIAS_FLcDNA=J023145H11;TENOR=Os04t0600400-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	30297318	30297406	.	-	.	Parent=Os04t0600400-01
Chr04	irgsp1_rep	CDS	30297089	30297317	.	-	0	Parent=Os04t0600400-01
Chr04	irgsp1_rep	CDS	30296543	30296673	.	-	2	Parent=Os04t0600400-01
Chr04	irgsp1_rep	CDS	30295917	30296042	.	-	0	Parent=Os04t0600400-01
Chr04	irgsp1_rep	CDS	30295605	30295732	.	-	0	Parent=Os04t0600400-01
Chr04	irgsp1_rep	CDS	30295036	30295351	.	-	1	Parent=Os04t0600400-01
Chr04	irgsp1_rep	three_prime_UTR	30294784	30295035	.	-	.	Parent=Os04t0600400-01
Chr04	irgsp1_rep	mRNA	30297864	30305606	.	-	.	ID=Os04t0600500-01;Name=Os04t0600500-01;Locus_id=Os04g0600500;CGSNL Gene Symbol=BRXL3;CGSNL Gene Name=BREVIS RADIX-LIKE 3;Oryzabase Gene Symbol Synonym(s)=OsBRXL3;Oryzabase Gene Name Synonym(s)=Brevis radix-like 3%2C BRX-like 3;Note=Disease resistance/zinc finger/Chromosome condensation-like region domain containing protein.;Transcript_evidence=AK105483 (DDBJ%2C Best hit);ORF_evidence=Q01HU1 (UniProt);InterPro=Brevis radix-like domain (IPR013591);NIAS_FLcDNA=001-127-B04;Oryzabase=8929;TENOR=Os04t0600500-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	30305197	30305606	.	-	.	Parent=Os04t0600500-01
Chr04	irgsp1_rep	five_prime_UTR	30304772	30304919	.	-	.	Parent=Os04t0600500-01
Chr04	irgsp1_rep	five_prime_UTR	30303047	30303155	.	-	.	Parent=Os04t0600500-01
Chr04	irgsp1_rep	CDS	30302942	30303046	.	-	0	Parent=Os04t0600500-01
Chr04	irgsp1_rep	CDS	30299252	30299709	.	-	0	Parent=Os04t0600500-01
Chr04	irgsp1_rep	CDS	30298165	30298243	.	-	1	Parent=Os04t0600500-01
Chr04	irgsp1_rep	three_prime_UTR	30297864	30298164	.	-	.	Parent=Os04t0600500-01
Chr04	irgsp1_rep	mRNA	30298406	30299725	.	+	.	ID=Os04t0600651-00;Name=Os04t0600651-00;Locus_id=Os04g0600651;Note=Hypothetical gene.;Transcript_evidence=BT084039 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0600651-00;KEGG=Os04t0600651-00
Chr04	irgsp1_rep	CDS	30298406	30298858	.	+	0	Parent=Os04t0600651-00
Chr04	irgsp1_rep	three_prime_UTR	30298859	30299725	.	+	.	Parent=Os04t0600651-00
Chr04	irgsp1_rep	mRNA	30311574	30316221	.	-	.	ID=Os04t0600800-01;Name=Os04t0600800-01;Locus_id=Os04g0600800;RAP-DB Gene Symbol Synonym(s)=COLD1;RAP-DB Gene Name Synonym(s)=CHILLING TOLERANCE DIVERGENCE 1;CGSNL Gene Symbol=COLD1;CGSNL Gene Name=CHILLING TOLERANCE DIVERGENCE 1;Oryzabase Gene Symbol Synonym(s)=OsCOLD1;Note=Regulator of G-protein signaling%2C Chilling tolerance;Transcript_evidence=AK318606;ORF_evidence=Q7X7S8;GO=Cellular Component: membrane (GO:0016020);InterPro=The Golgi pH Regulator/GPCR-type G proteins (IPR015672),Golgi pH regulator%2C conserved domain (IPR022535),Abscisic acid G-protein coupled receptor-like domain (IPR025969);NIAS_FLcDNA=J100078D14;Manual Curation=June 10%2C 2015;Literature_PMID=25728666;Oryzabase=20191;TENOR=Os04t0600800-01;KEGG=Os04t0600800-01
Chr04	irgsp1_rep	five_prime_UTR	30316150	30316221	.	-	.	Parent=Os04t0600800-01
Chr04	irgsp1_rep	CDS	30315834	30316149	.	-	0	Parent=Os04t0600800-01
Chr04	irgsp1_rep	CDS	30315616	30315723	.	-	2	Parent=Os04t0600800-01
Chr04	irgsp1_rep	CDS	30315341	30315461	.	-	2	Parent=Os04t0600800-01
Chr04	irgsp1_rep	CDS	30315099	30315228	.	-	1	Parent=Os04t0600800-01
Chr04	irgsp1_rep	CDS	30314646	30314724	.	-	0	Parent=Os04t0600800-01
Chr04	irgsp1_rep	CDS	30314467	30314555	.	-	2	Parent=Os04t0600800-01
Chr04	irgsp1_rep	CDS	30313774	30313866	.	-	0	Parent=Os04t0600800-01
Chr04	irgsp1_rep	CDS	30313476	30313502	.	-	0	Parent=Os04t0600800-01
Chr04	irgsp1_rep	CDS	30313281	30313367	.	-	0	Parent=Os04t0600800-01
Chr04	irgsp1_rep	CDS	30312864	30312935	.	-	0	Parent=Os04t0600800-01
Chr04	irgsp1_rep	CDS	30312626	30312756	.	-	0	Parent=Os04t0600800-01
Chr04	irgsp1_rep	CDS	30312129	30312282	.	-	1	Parent=Os04t0600800-01
Chr04	irgsp1_rep	three_prime_UTR	30312080	30312128	.	-	.	Parent=Os04t0600800-01
Chr04	irgsp1_rep	three_prime_UTR	30311574	30312004	.	-	.	Parent=Os04t0600800-01
Chr04	irgsp1_rep	mRNA	30317735	30320609	.	-	.	ID=Os04t0600900-01;Name=Os04t0600900-01;Locus_id=Os04g0600900;CGSNL Gene Symbol=GRF3;CGSNL Gene Name=GROWTH-REGULATING FACTOR 3;Oryzabase Gene Symbol Synonym(s)=OsGRF3;Oryzabase Gene Name Synonym(s)=growth-regulating factor3;Note=Similar to B0403H10-OSIGBa0105A11.9 protein.;Transcript_evidence=AK241439 (DDBJ%2C Best hit);ORF_evidence=Q01HT9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WRC (IPR014977);NIAS_FLcDNA=J065162G19;Oryzabase=10278;TENOR=Os04t0600900-01;KEGG=Os04t0600900-01
Chr04	irgsp1_rep	five_prime_UTR	30320398	30320609	.	-	.	Parent=Os04t0600900-01
Chr04	irgsp1_rep	CDS	30319931	30320397	.	-	0	Parent=Os04t0600900-01
Chr04	irgsp1_rep	CDS	30318098	30318519	.	-	1	Parent=Os04t0600900-01
Chr04	irgsp1_rep	CDS	30317995	30318002	.	-	2	Parent=Os04t0600900-01
Chr04	irgsp1_rep	three_prime_UTR	30317735	30317994	.	-	.	Parent=Os04t0600900-01
Chr04	irgsp1_rep	mRNA	30317749	30321610	.	-	.	ID=Os04t0600900-02;Name=Os04t0600900-02;Locus_id=Os04g0600900;RAP-DB Gene Symbol Synonym(s)=GRF3%2C OsGRF3;RAP-DB Gene Name Synonym(s)=GROWTH-REGULATING FACTOR 3%2C growth-regulating factor3;CGSNL Gene Symbol=GRF3;CGSNL Gene Name=GROWTH-REGULATING FACTOR 3;Oryzabase Gene Symbol Synonym(s)=OsGRF3;Oryzabase Gene Name Synonym(s)=growth-regulating factor3;Note=Transcriptional activator/repressor%2C Reguration of KNOX gene%2C Oskn2 (Regulator of meristem function);Transcript_evidence=FJ546693 (IR58);ORF_evidence=Q6AWY6,B9VHC2;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides (GO:0016818),Cellular Component: nucleus (GO:0005634);InterPro=Glutamine-Leucine-Glutamine%2C QLQ (IPR014978),WRC (IPR014977);Manual Curation=April 15%2C 2014;Literature_PMID=24532604,15295073;Oryzabase=10278
Chr04	irgsp1_rep	five_prime_UTR	30321565	30321610	.	-	.	Parent=Os04t0600900-02
Chr04	irgsp1_rep	CDS	30321476	30321564	.	-	0	Parent=Os04t0600900-02
Chr04	irgsp1_rep	CDS	30321170	30321387	.	-	1	Parent=Os04t0600900-02
Chr04	irgsp1_rep	CDS	30319931	30320348	.	-	2	Parent=Os04t0600900-02
Chr04	irgsp1_rep	CDS	30318098	30318519	.	-	1	Parent=Os04t0600900-02
Chr04	irgsp1_rep	CDS	30317995	30318002	.	-	2	Parent=Os04t0600900-02
Chr04	irgsp1_rep	three_prime_UTR	30317749	30317994	.	-	.	Parent=Os04t0600900-02
Chr04	irgsp1_rep	mRNA	30332649	30333151	.	-	.	ID=Os04t0601200-01;Name=Os04t0601200-01;Locus_id=Os04g0601200;Note=Hypothetical gene.;Transcript_evidence=AK063203 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-112-C10;Expression=AK063203;TENOR=Os04t0601200-01;KEGG=Os04t0601200-01
Chr04	irgsp1_rep	CDS	30332912	30333151	.	-	0	Parent=Os04t0601200-01
Chr04	irgsp1_rep	three_prime_UTR	30332649	30332911	.	-	.	Parent=Os04t0601200-01
Chr04	irgsp1_rep	mRNA	30362015	30363648	.	-	.	ID=Os04t0601400-01;Name=Os04t0601400-01;Locus_id=Os04g0601400;Note=EF-HAND 2 domain containing protein.;Transcript_evidence=AK069777 (DDBJ%2C Best hit);ORF_evidence=Q01HT8 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J023026G02;Expression=AK069777;TENOR=Os04t0601400-01;KEGG=Os04t0601400-01
Chr04	irgsp1_rep	five_prime_UTR	30363564	30363648	.	-	.	Parent=Os04t0601400-01
Chr04	irgsp1_rep	CDS	30363524	30363563	.	-	0	Parent=Os04t0601400-01
Chr04	irgsp1_rep	CDS	30363273	30363408	.	-	2	Parent=Os04t0601400-01
Chr04	irgsp1_rep	CDS	30363108	30363180	.	-	1	Parent=Os04t0601400-01
Chr04	irgsp1_rep	CDS	30362206	30362475	.	-	0	Parent=Os04t0601400-01
Chr04	irgsp1_rep	three_prime_UTR	30362015	30362205	.	-	.	Parent=Os04t0601400-01
Chr04	irgsp1_rep	mRNA	30366156	30367187	.	-	.	ID=Os04t0601500-00;Name=Os04t0601500-00;Locus_id=Os04g0601500;Note=Similar to B0403H10-OSIGBa0105A11.11 protein.;Transcript_evidence=EU955565 (DDBJ);ORF_evidence=Q01HT7 (UniProt);TENOR=Os04t0601500-00;KEGG=Os04t0601500-00
Chr04	irgsp1_rep	CDS	30366925	30367187	.	-	0	Parent=Os04t0601500-00
Chr04	irgsp1_rep	CDS	30366757	30366829	.	-	1	Parent=Os04t0601500-00
Chr04	irgsp1_rep	CDS	30366156	30366416	.	-	0	Parent=Os04t0601500-00
Chr04	irgsp1_rep	mRNA	30374702	30377053	.	-	.	ID=Os04t0601700-01;Name=Os04t0601700-01;Locus_id=Os04g0601700;Note=Similar to Vacuolar ATP synthase subunit G 1 (EC 3.6.3.14) (V-ATPase G subunit 1) (Vacuolar proton pump G subunit 1).;Transcript_evidence=AK059032 (DDBJ%2C Best hit);ORF_evidence=Q01HT5 (UniProt);GO=Biological Process: proton transport (GO:0015992),Cellular Component: vacuolar proton-transporting V-type ATPase complex (GO:0016471),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C catalyzing transmembrane movement of substances (GO:0016820);InterPro=Vacuolar (H+)-ATPase G subunit (IPR005124);NIAS_FLcDNA=001-021-C05;Expression=AK059032;TENOR=Os04t0601700-01;KEGG=Os04t0601700-01 (EC:3.6.3.14)
Chr04	irgsp1_rep	five_prime_UTR	30376987	30377053	.	-	.	Parent=Os04t0601700-01
Chr04	irgsp1_rep	five_prime_UTR	30375815	30375821	.	-	.	Parent=Os04t0601700-01
Chr04	irgsp1_rep	CDS	30375727	30375814	.	-	0	Parent=Os04t0601700-01
Chr04	irgsp1_rep	CDS	30375198	30375298	.	-	2	Parent=Os04t0601700-01
Chr04	irgsp1_rep	CDS	30374956	30375099	.	-	0	Parent=Os04t0601700-01
Chr04	irgsp1_rep	three_prime_UTR	30374883	30374955	.	-	.	Parent=Os04t0601700-01
Chr04	irgsp1_rep	three_prime_UTR	30374702	30374874	.	-	.	Parent=Os04t0601700-01
Chr04	irgsp1_rep	mRNA	30374708	30377015	.	-	.	ID=Os04t0601700-02;Name=Os04t0601700-02;Locus_id=Os04g0601700;Note=Similar to Vacuolar ATP synthase subunit G 1 (EC 3.6.3.14) (V-ATPase G subunit 1) (Vacuolar proton pump G subunit 1).;Transcript_evidence=AK067286 (DDBJ%2C Best hit);ORF_evidence=Q01HT5 (UniProt);GO=Biological Process: proton transport (GO:0015992),Cellular Component: vacuolar proton-transporting V-type ATPase complex (GO:0016471),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C catalyzing transmembrane movement of substances (GO:0016820);InterPro=Vacuolar (H+)-ATPase G subunit (IPR005124);NIAS_FLcDNA=J013101A22;Expression=AK067286;TENOR=Os04t0601700-02;KEGG=Os04t0601700-02 (EC:3.6.3.14)
Chr04	irgsp1_rep	five_prime_UTR	30376987	30377015	.	-	.	Parent=Os04t0601700-02
Chr04	irgsp1_rep	five_prime_UTR	30375815	30375824	.	-	.	Parent=Os04t0601700-02
Chr04	irgsp1_rep	CDS	30375727	30375814	.	-	0	Parent=Os04t0601700-02
Chr04	irgsp1_rep	CDS	30375198	30375298	.	-	2	Parent=Os04t0601700-02
Chr04	irgsp1_rep	CDS	30374956	30375099	.	-	0	Parent=Os04t0601700-02
Chr04	irgsp1_rep	three_prime_UTR	30374708	30374955	.	-	.	Parent=Os04t0601700-02
Chr04	irgsp1_rep	mRNA	30377262	30379529	.	+	.	ID=Os04t0601800-01;Name=Os04t0601800-01;Locus_id=Os04g0601800;RAP-DB Gene Symbol Synonym(s)=WSP1;RAP-DB Gene Name Synonym(s)=white-stripe leaves and panicles 1%2C multiple organellar RNA editing factor 2b;CGSNL Gene Symbol=WSP1;CGSNL Gene Name=WHITE-STRIPE LEAVES AND PANICLES 1;Oryzabase Gene Symbol Synonym(s)=OsWSP1%2C OsMORF2b%2C MORF2b;Oryzabase Gene Name Synonym(s)=white-stripe leaves and panicles 1%2C multiple organellar RNA editing factor 2b;Note=Multiple organellar RNA editing factor (MORF) family protein%2C Chloroplast development;Transcript_evidence=AK062641 (truncated),Inferred from literature;ORF_evidence=Q7X6N4;NIAS_FLcDNA=001-105-D09 (truncated);Manual Curation=June 17%2C 2020;Literature_PMID=27622591;Oryzabase=21736;Expression=AK062641;TENOR=Os04t0601800-01;KEGG=Os04t0601800-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=chloroplast (GO:0009507)
Chr04	irgsp1_rep	five_prime_UTR	30377262	30377337	.	+	.	Parent=Os04t0601800-01
Chr04	irgsp1_rep	CDS	30377338	30377693	.	+	0	Parent=Os04t0601800-01
Chr04	irgsp1_rep	CDS	30377792	30377889	.	+	1	Parent=Os04t0601800-01
Chr04	irgsp1_rep	CDS	30378625	30378690	.	+	2	Parent=Os04t0601800-01
Chr04	irgsp1_rep	CDS	30379171	30379322	.	+	2	Parent=Os04t0601800-01
Chr04	irgsp1_rep	three_prime_UTR	30379323	30379529	.	+	.	Parent=Os04t0601800-01
Chr04	irgsp1_rep	mRNA	30381723	30384728	.	+	.	ID=Os04t0602000-00;Name=Os04t0602000-00;Locus_id=Os04g0602000;Note=Similar to B0403H10-OSIGBa0105A11.12 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01HT6 (UniProt);TENOR=Os04t0602000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	30381723	30383505	.	+	0	Parent=Os04t0602000-00
Chr04	irgsp1_rep	CDS	30384188	30384253	.	+	2	Parent=Os04t0602000-00
Chr04	irgsp1_rep	CDS	30384577	30384728	.	+	2	Parent=Os04t0602000-00
Chr04	irgsp1_rep	mRNA	30385512	30388334	.	+	.	ID=Os04t0602100-01;Name=Os04t0602100-01;Locus_id=Os04g0602100;Note=Plant ascorbate peroxidase domain containing protein.;Transcript_evidence=AK069838 (DDBJ%2C Best hit);ORF_evidence=Q01HT3 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Plant ascorbate peroxidase (IPR002207),Haem peroxidase (IPR010255);NIAS_FLcDNA=J023033M17;Expression=AK069838;TENOR=Os04t0602100-01;KEGG=Os04t0602100-01 (EC:1.11.1.11)
Chr04	irgsp1_rep	five_prime_UTR	30385512	30385666	.	+	.	Parent=Os04t0602100-01
Chr04	irgsp1_rep	CDS	30385667	30385783	.	+	0	Parent=Os04t0602100-01
Chr04	irgsp1_rep	CDS	30385876	30385971	.	+	0	Parent=Os04t0602100-01
Chr04	irgsp1_rep	CDS	30386174	30386258	.	+	0	Parent=Os04t0602100-01
Chr04	irgsp1_rep	CDS	30386346	30386380	.	+	2	Parent=Os04t0602100-01
Chr04	irgsp1_rep	CDS	30386473	30386538	.	+	0	Parent=Os04t0602100-01
Chr04	irgsp1_rep	CDS	30386640	30386680	.	+	0	Parent=Os04t0602100-01
Chr04	irgsp1_rep	CDS	30386797	30386927	.	+	1	Parent=Os04t0602100-01
Chr04	irgsp1_rep	CDS	30387095	30387201	.	+	2	Parent=Os04t0602100-01
Chr04	irgsp1_rep	CDS	30387348	30387485	.	+	0	Parent=Os04t0602100-01
Chr04	irgsp1_rep	CDS	30387604	30387738	.	+	0	Parent=Os04t0602100-01
Chr04	irgsp1_rep	CDS	30387882	30387992	.	+	0	Parent=Os04t0602100-01
Chr04	irgsp1_rep	three_prime_UTR	30387993	30388334	.	+	.	Parent=Os04t0602100-01
Chr04	irgsp1_rep	mRNA	30385523	30387154	.	+	.	ID=Os04t0602100-02;Name=Os04t0602100-02;Locus_id=Os04g0602100;Note=Similar to B0403H10-OSIGBa0105A11.15 protein.;Transcript_evidence=AK121197 (DDBJ%2C Best hit);ORF_evidence=Q01HT3 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Plant ascorbate peroxidase (IPR002207),Haem peroxidase (IPR010255);NIAS_FLcDNA=J023087B01;TENOR=Os04t0602100-02
Chr04	irgsp1_rep	five_prime_UTR	30385523	30385666	.	+	.	Parent=Os04t0602100-02
Chr04	irgsp1_rep	CDS	30385667	30385783	.	+	0	Parent=Os04t0602100-02
Chr04	irgsp1_rep	CDS	30385876	30385971	.	+	0	Parent=Os04t0602100-02
Chr04	irgsp1_rep	CDS	30386174	30386258	.	+	0	Parent=Os04t0602100-02
Chr04	irgsp1_rep	CDS	30386346	30386380	.	+	2	Parent=Os04t0602100-02
Chr04	irgsp1_rep	CDS	30386473	30386538	.	+	0	Parent=Os04t0602100-02
Chr04	irgsp1_rep	CDS	30386640	30386680	.	+	0	Parent=Os04t0602100-02
Chr04	irgsp1_rep	CDS	30386797	30386927	.	+	1	Parent=Os04t0602100-02
Chr04	irgsp1_rep	CDS	30387095	30387154	.	+	2	Parent=Os04t0602100-02
Chr04	irgsp1_rep	mRNA	30388420	30390045	.	-	.	ID=Os04t0602200-01;Name=Os04t0602200-01;Locus_id=Os04g0602200;Note=Bacterial extracellular solute-binding protein%2C family 1 protein.;Transcript_evidence=AK120467 (DDBJ%2C Best hit);ORF_evidence=Q01HT2 (UniProt);GO=Biological Process: transport (GO:0006810),Molecular Function: transporter activity (GO:0005215);InterPro=Bacterial extracellular solute-binding%2C family 1 (IPR006059);NIAS_FLcDNA=J013109C06;Expression=AK120467;TENOR=Os04t0602200-01;KEGG=Os04t0602200-01
Chr04	irgsp1_rep	five_prime_UTR	30390045	30390045	.	-	.	Parent=Os04t0602200-01
Chr04	irgsp1_rep	CDS	30389826	30390044	.	-	0	Parent=Os04t0602200-01
Chr04	irgsp1_rep	CDS	30389554	30389688	.	-	0	Parent=Os04t0602200-01
Chr04	irgsp1_rep	CDS	30389268	30389450	.	-	0	Parent=Os04t0602200-01
Chr04	irgsp1_rep	CDS	30388949	30389110	.	-	0	Parent=Os04t0602200-01
Chr04	irgsp1_rep	CDS	30388432	30388836	.	-	0	Parent=Os04t0602200-01
Chr04	irgsp1_rep	three_prime_UTR	30388420	30388431	.	-	.	Parent=Os04t0602200-01
Chr04	irgsp1_rep	mRNA	30390323	30390419	.	+	.	ID=Os04t0602250-00;Name=Os04t0602250-00;Locus_id=Os04g0602250;Note=Non-protein coding transcript.;Transcript_evidence=EU946899 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0602250-00
Chr04	irgsp1_rep	exon	30390323	30390419	.	+	.	Parent=Os04t0602250-00
Chr04	irgsp1_rep	mRNA	30393180	30395406	.	-	.	ID=Os04t0602300-01;Name=Os04t0602300-01;Locus_id=Os04g0602300;Note=Similar to B0403H10-OSIGBa0105A11.17 protein.;Transcript_evidence=AK105720 (DDBJ%2C Best hit);ORF_evidence=Q01HT1 (UniProt);NIAS_FLcDNA=001-201-F11;Expression=AK105720;TENOR=Os04t0602300-01;KEGG=Os04t0602300-01
Chr04	irgsp1_rep	five_prime_UTR	30394113	30395406	.	-	.	Parent=Os04t0602300-01
Chr04	irgsp1_rep	CDS	30393501	30394112	.	-	0	Parent=Os04t0602300-01
Chr04	irgsp1_rep	three_prime_UTR	30393180	30393500	.	-	.	Parent=Os04t0602300-01
Chr04	irgsp1_rep	mRNA	30396952	30401924	.	-	.	ID=Os04t0602400-01;Name=Os04t0602400-01;Locus_id=Os04g0602400;CGSNL Gene Symbol=MT;CGSNL Gene Name=MALTOSE TRANSLOCATOR;Oryzabase Gene Symbol Synonym(s)=OsMT%2C OsMEX1%2C MEX1;Oryzabase Gene Name Synonym(s)=maltose excess1%2C maltose excess 1;Note=Similar to Maltose excess protein 1%2C chloroplast precursor (Root cap protein 1).;Transcript_evidence=AK071005 (DDBJ%2C Best hit);ORF_evidence=Q01HT0 (UniProt);NIAS_FLcDNA=J023078D11;Oryzabase=8728;Expression=AK071005;TENOR=Os04t0602400-01;KEGG=Os04t0602400-01
Chr04	irgsp1_rep	five_prime_UTR	30401693	30401924	.	-	.	Parent=Os04t0602400-01
Chr04	irgsp1_rep	CDS	30401459	30401692	.	-	0	Parent=Os04t0602400-01
Chr04	irgsp1_rep	CDS	30401211	30401366	.	-	0	Parent=Os04t0602400-01
Chr04	irgsp1_rep	CDS	30400844	30401134	.	-	0	Parent=Os04t0602400-01
Chr04	irgsp1_rep	CDS	30400581	30400670	.	-	0	Parent=Os04t0602400-01
Chr04	irgsp1_rep	CDS	30399689	30399790	.	-	0	Parent=Os04t0602400-01
Chr04	irgsp1_rep	CDS	30399490	30399608	.	-	0	Parent=Os04t0602400-01
Chr04	irgsp1_rep	CDS	30397787	30397849	.	-	1	Parent=Os04t0602400-01
Chr04	irgsp1_rep	CDS	30397622	30397683	.	-	1	Parent=Os04t0602400-01
Chr04	irgsp1_rep	CDS	30397339	30397421	.	-	2	Parent=Os04t0602400-01
Chr04	irgsp1_rep	three_prime_UTR	30396952	30397338	.	-	.	Parent=Os04t0602400-01
Chr04	irgsp1_rep	mRNA	30405474	30409231	.	+	.	ID=Os04t0602500-01;Name=Os04t0602500-01;Locus_id=Os04g0602500;Note=Similar to Pectin acetylesterase.;Transcript_evidence=AK073958 (DDBJ%2C Best hit);ORF_evidence=Q01HS9 (UniProt);InterPro=Pectinacetylesterase (IPR004963);NIAS_FLcDNA=J033076C10;Expression=AK073958;TENOR=Os04t0602500-01;KEGG=Os04t0602500-01
Chr04	irgsp1_rep	five_prime_UTR	30405474	30405522	.	+	.	Parent=Os04t0602500-01
Chr04	irgsp1_rep	CDS	30405523	30405731	.	+	0	Parent=Os04t0602500-01
Chr04	irgsp1_rep	CDS	30405831	30405964	.	+	1	Parent=Os04t0602500-01
Chr04	irgsp1_rep	CDS	30406117	30406199	.	+	2	Parent=Os04t0602500-01
Chr04	irgsp1_rep	CDS	30406416	30406542	.	+	0	Parent=Os04t0602500-01
Chr04	irgsp1_rep	CDS	30406865	30406944	.	+	2	Parent=Os04t0602500-01
Chr04	irgsp1_rep	CDS	30407020	30407106	.	+	0	Parent=Os04t0602500-01
Chr04	irgsp1_rep	CDS	30407309	30407433	.	+	0	Parent=Os04t0602500-01
Chr04	irgsp1_rep	CDS	30407536	30407596	.	+	1	Parent=Os04t0602500-01
Chr04	irgsp1_rep	CDS	30407799	30407852	.	+	0	Parent=Os04t0602500-01
Chr04	irgsp1_rep	CDS	30407939	30408016	.	+	0	Parent=Os04t0602500-01
Chr04	irgsp1_rep	CDS	30408442	30408547	.	+	0	Parent=Os04t0602500-01
Chr04	irgsp1_rep	CDS	30408648	30408796	.	+	2	Parent=Os04t0602500-01
Chr04	irgsp1_rep	CDS	30408938	30409045	.	+	0	Parent=Os04t0602500-01
Chr04	irgsp1_rep	three_prime_UTR	30409046	30409231	.	+	.	Parent=Os04t0602500-01
Chr04	irgsp1_rep	mRNA	30405831	30409351	.	+	.	ID=Os04t0602500-02;Name=Os04t0602500-02;Locus_id=Os04g0602500;Note=Similar to B0403H10-OSIGBa0105A11.19 protein.;Transcript_evidence=AK058634 (DDBJ%2C Best hit);ORF_evidence=Q01HS9 (UniProt);InterPro=Pectinacetylesterase (IPR004963);NIAS_FLcDNA=001-018-D02;Expression=AK058634;TENOR=Os04t0602500-02;KEGG=Os04t0602500-02
Chr04	irgsp1_rep	five_prime_UTR	30405831	30405831	.	+	.	Parent=Os04t0602500-02
Chr04	irgsp1_rep	CDS	30405832	30405964	.	+	0	Parent=Os04t0602500-02
Chr04	irgsp1_rep	CDS	30406117	30406199	.	+	2	Parent=Os04t0602500-02
Chr04	irgsp1_rep	CDS	30406416	30406542	.	+	0	Parent=Os04t0602500-02
Chr04	irgsp1_rep	CDS	30406865	30406944	.	+	2	Parent=Os04t0602500-02
Chr04	irgsp1_rep	CDS	30407020	30407106	.	+	0	Parent=Os04t0602500-02
Chr04	irgsp1_rep	CDS	30407309	30407433	.	+	0	Parent=Os04t0602500-02
Chr04	irgsp1_rep	CDS	30407536	30407596	.	+	1	Parent=Os04t0602500-02
Chr04	irgsp1_rep	CDS	30407799	30407852	.	+	0	Parent=Os04t0602500-02
Chr04	irgsp1_rep	CDS	30407939	30408016	.	+	0	Parent=Os04t0602500-02
Chr04	irgsp1_rep	CDS	30408442	30408547	.	+	0	Parent=Os04t0602500-02
Chr04	irgsp1_rep	CDS	30408648	30408796	.	+	2	Parent=Os04t0602500-02
Chr04	irgsp1_rep	CDS	30408938	30409045	.	+	0	Parent=Os04t0602500-02
Chr04	irgsp1_rep	three_prime_UTR	30409046	30409351	.	+	.	Parent=Os04t0602500-02
Chr04	irgsp1_rep	mRNA	30410105	30413160	.	+	.	ID=Os04t0602600-01;Name=Os04t0602600-01;Locus_id=Os04g0602600;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK120600 (DDBJ%2C Best hit);ORF_evidence=Q01HS8 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013149I02;Expression=AK120600;TENOR=Os04t0602600-01;KEGG=Os04t0602600-01
Chr04	irgsp1_rep	five_prime_UTR	30410105	30410227	.	+	.	Parent=Os04t0602600-01
Chr04	irgsp1_rep	CDS	30410228	30412642	.	+	0	Parent=Os04t0602600-01
Chr04	irgsp1_rep	three_prime_UTR	30412643	30413160	.	+	.	Parent=Os04t0602600-01
Chr04	irgsp1_rep	mRNA	30413771	30415745	.	-	.	ID=Os04t0602700-00;Name=Os04t0602700-00;Locus_id=Os04g0602700;Note=RNA recognition motif%2C RNP-1 domain containing protein.;Transcript_evidence=EU959252 (DDBJ);ORF_evidence=Q01HS7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=RNA recognition motif domain (IPR000504),Oxoglutarate/iron-dependent oxygenase (IPR005123),Nucleotide-binding%2C alpha-beta plait (IPR012677);TENOR=Os04t0602700-00;KEGG=Os04t0602700-00
Chr04	irgsp1_rep	five_prime_UTR	30415689	30415745	.	-	.	Parent=Os04t0602700-00
Chr04	irgsp1_rep	CDS	30415266	30415688	.	-	0	Parent=Os04t0602700-00
Chr04	irgsp1_rep	CDS	30415061	30415147	.	-	0	Parent=Os04t0602700-00
Chr04	irgsp1_rep	CDS	30414737	30414862	.	-	0	Parent=Os04t0602700-00
Chr04	irgsp1_rep	CDS	30414292	30414576	.	-	0	Parent=Os04t0602700-00
Chr04	irgsp1_rep	CDS	30414013	30414078	.	-	0	Parent=Os04t0602700-00
Chr04	irgsp1_rep	CDS	30413784	30413843	.	-	0	Parent=Os04t0602700-00
Chr04	irgsp1_rep	three_prime_UTR	30413771	30413783	.	-	.	Parent=Os04t0602700-00
Chr04	irgsp1_rep	mRNA	30416463	30424148	.	-	.	ID=Os04t0602800-01;Name=Os04t0602800-01;Locus_id=Os04g0602800;Note=Similar to Yarrowia lipolytica Chromosome D of strain CLIB99 of Yarrowia lipolytica.;Transcript_evidence=AK100925 (DDBJ%2C Best hit);ORF_evidence=Q01HS6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023134G14;Expression=AK100925;TENOR=Os04t0602800-01;KEGG=Os04t0602800-01
Chr04	irgsp1_rep	five_prime_UTR	30423511	30424148	.	-	.	Parent=Os04t0602800-01
Chr04	irgsp1_rep	CDS	30423331	30423510	.	-	0	Parent=Os04t0602800-01
Chr04	irgsp1_rep	CDS	30422590	30422789	.	-	0	Parent=Os04t0602800-01
Chr04	irgsp1_rep	CDS	30421712	30421865	.	-	1	Parent=Os04t0602800-01
Chr04	irgsp1_rep	CDS	30421516	30421625	.	-	0	Parent=Os04t0602800-01
Chr04	irgsp1_rep	CDS	30421353	30421422	.	-	1	Parent=Os04t0602800-01
Chr04	irgsp1_rep	CDS	30421193	30421275	.	-	0	Parent=Os04t0602800-01
Chr04	irgsp1_rep	CDS	30421026	30421107	.	-	1	Parent=Os04t0602800-01
Chr04	irgsp1_rep	CDS	30420883	30420923	.	-	0	Parent=Os04t0602800-01
Chr04	irgsp1_rep	CDS	30420588	30420710	.	-	1	Parent=Os04t0602800-01
Chr04	irgsp1_rep	CDS	30420237	30420381	.	-	1	Parent=Os04t0602800-01
Chr04	irgsp1_rep	CDS	30420051	30420150	.	-	0	Parent=Os04t0602800-01
Chr04	irgsp1_rep	CDS	30419496	30419584	.	-	2	Parent=Os04t0602800-01
Chr04	irgsp1_rep	CDS	30419173	30419247	.	-	0	Parent=Os04t0602800-01
Chr04	irgsp1_rep	CDS	30418620	30418694	.	-	0	Parent=Os04t0602800-01
Chr04	irgsp1_rep	CDS	30417756	30418516	.	-	0	Parent=Os04t0602800-01
Chr04	irgsp1_rep	CDS	30417522	30417680	.	-	1	Parent=Os04t0602800-01
Chr04	irgsp1_rep	CDS	30416816	30417063	.	-	1	Parent=Os04t0602800-01
Chr04	irgsp1_rep	CDS	30416660	30416739	.	-	2	Parent=Os04t0602800-01
Chr04	irgsp1_rep	three_prime_UTR	30416463	30416659	.	-	.	Parent=Os04t0602800-01
Chr04	irgsp1_rep	mRNA	30416463	30418313	.	-	.	ID=Os04t0602800-02;Name=Os04t0602800-02;Locus_id=Os04g0602800;Note=Similar to B0403H10-OSIGBa0105A11.22 protein.;Transcript_evidence=AK060878 (DDBJ%2C Best hit);ORF_evidence=Q01HS6 (UniProt);NIAS_FLcDNA=001-035-A07;Expression=AK060878;TENOR=Os04t0602800-02;KEGG=Os04t0602800-02
Chr04	irgsp1_rep	five_prime_UTR	30418313	30418313	.	-	.	Parent=Os04t0602800-02
Chr04	irgsp1_rep	CDS	30417756	30418312	.	-	0	Parent=Os04t0602800-02
Chr04	irgsp1_rep	CDS	30417522	30417680	.	-	1	Parent=Os04t0602800-02
Chr04	irgsp1_rep	CDS	30416816	30417063	.	-	1	Parent=Os04t0602800-02
Chr04	irgsp1_rep	CDS	30416660	30416739	.	-	2	Parent=Os04t0602800-02
Chr04	irgsp1_rep	three_prime_UTR	30416463	30416659	.	-	.	Parent=Os04t0602800-02
Chr04	irgsp1_rep	mRNA	30428193	30431681	.	+	.	ID=Os04t0602900-01;Name=Os04t0602900-01;Locus_id=Os04g0602900;Note=Similar to cDNA clone:J023087M06%2C full insert sequence.;Transcript_evidence=AK065982 (DDBJ%2C Best hit);ORF_evidence=B7EQE6 (UniProt);GO=Biological Process: C-terminal protein methylation (GO:0006481),Cellular Component: integral to membrane (GO:0016021),Molecular Function: protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity (GO:0004671);InterPro=Isoprenylcysteine carboxyl methyltransferase (IPR007269);NIAS_FLcDNA=J013045J05;Expression=AK065982;TENOR=Os04t0602900-01;KEGG=Os04t0602900-01 (EC:2.1.1.100)
Chr04	irgsp1_rep	five_prime_UTR	30428193	30429506	.	+	.	Parent=Os04t0602900-01
Chr04	irgsp1_rep	CDS	30429507	30429722	.	+	0	Parent=Os04t0602900-01
Chr04	irgsp1_rep	three_prime_UTR	30429723	30431681	.	+	.	Parent=Os04t0602900-01
Chr04	irgsp1_rep	mRNA	30428216	30431681	.	+	.	ID=Os04t0602900-02;Name=Os04t0602900-02;Locus_id=Os04g0602900;Note=Similar to Protein-S-isoprenylcysteine O-methyltransferase.;Transcript_evidence=AK100414 (DDBJ%2C Best hit);ORF_evidence=B6TWA2 (UniProt);NIAS_FLcDNA=J023087M06;TENOR=Os04t0602900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	30428216	30428268	.	+	.	Parent=Os04t0602900-02
Chr04	irgsp1_rep	CDS	30428269	30428521	.	+	0	Parent=Os04t0602900-02
Chr04	irgsp1_rep	CDS	30429006	30429007	.	+	2	Parent=Os04t0602900-02
Chr04	irgsp1_rep	three_prime_UTR	30429008	30429090	.	+	.	Parent=Os04t0602900-02
Chr04	irgsp1_rep	three_prime_UTR	30429475	30429718	.	+	.	Parent=Os04t0602900-02
Chr04	irgsp1_rep	three_prime_UTR	30429896	30430024	.	+	.	Parent=Os04t0602900-02
Chr04	irgsp1_rep	three_prime_UTR	30430361	30430469	.	+	.	Parent=Os04t0602900-02
Chr04	irgsp1_rep	three_prime_UTR	30431272	30431681	.	+	.	Parent=Os04t0602900-02
Chr04	irgsp1_rep	mRNA	30433286	30437475	.	+	.	ID=Os04t0603000-00;Name=Os04t0603000-00;Locus_id=Os04g0603000;Note=Similar to OSIGBa0118P15.1 protein.;Transcript_evidence=BT064689 (DDBJ);ORF_evidence=Q01KL0 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: isomerase activity (GO:0016853),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Aldose 1-epimerase (IPR008183),Glycoside hydrolase-type carbohydrate-binding (IPR011013),Glycoside hydrolase-type carbohydrate-binding%2C subgroup (IPR014718);TENOR=Os04t0603000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	30433286	30433316	.	+	.	Parent=Os04t0603000-00
Chr04	irgsp1_rep	CDS	30433317	30433445	.	+	0	Parent=Os04t0603000-00
Chr04	irgsp1_rep	CDS	30435001	30435075	.	+	0	Parent=Os04t0603000-00
Chr04	irgsp1_rep	CDS	30435432	30435488	.	+	0	Parent=Os04t0603000-00
Chr04	irgsp1_rep	CDS	30435580	30435740	.	+	0	Parent=Os04t0603000-00
Chr04	irgsp1_rep	CDS	30435843	30435983	.	+	1	Parent=Os04t0603000-00
Chr04	irgsp1_rep	CDS	30436863	30436965	.	+	1	Parent=Os04t0603000-00
Chr04	irgsp1_rep	CDS	30437032	30437198	.	+	0	Parent=Os04t0603000-00
Chr04	irgsp1_rep	CDS	30437275	30437461	.	+	1	Parent=Os04t0603000-00
Chr04	irgsp1_rep	three_prime_UTR	30437462	30437475	.	+	.	Parent=Os04t0603000-00
Chr04	irgsp1_rep	mRNA	30438927	30441472	.	+	.	ID=Os04t0603100-01;Name=Os04t0603100-01;Locus_id=Os04g0603100;Note=Hypothetical protein.;Transcript_evidence=AK073515 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033040F16;TENOR=Os04t0603100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	30438927	30438927	.	+	.	Parent=Os04t0603100-01
Chr04	irgsp1_rep	CDS	30438928	30439287	.	+	0	Parent=Os04t0603100-01
Chr04	irgsp1_rep	three_prime_UTR	30439288	30439298	.	+	.	Parent=Os04t0603100-01
Chr04	irgsp1_rep	three_prime_UTR	30439506	30441472	.	+	.	Parent=Os04t0603100-01
Chr04	irgsp1_rep	mRNA	30439477	30442817	.	-	.	ID=Os04t0603200-01;Name=Os04t0603200-01;Locus_id=Os04g0603200;CGSNL Gene Symbol=RMT1;CGSNL Gene Name=RING FINGER PROTEIN WITH MICROTUBULE-TARGETING DOMAIN 1;Oryzabase Gene Symbol Synonym(s)=OsRMT1;Oryzabase Gene Name Synonym(s)=RING finger protein with microtubule-targeting domain 1;Note=Similar to C-terminal zinc-finger (Fragment).;Transcript_evidence=AK100301 (DDBJ%2C Best hit),AK072200 (DDBJ%2C Best hit);ORF_evidence=Q01KK9 (UniProt);NIAS_FLcDNA=J023077P18,J013160D07;Oryzabase=20374;Expression=AK100301;TENOR=Os04t0603200-01;KEGG=Os04t0603200-01
Chr04	irgsp1_rep	five_prime_UTR	30442684	30442817	.	-	.	Parent=Os04t0603200-01
Chr04	irgsp1_rep	five_prime_UTR	30441209	30441227	.	-	.	Parent=Os04t0603200-01
Chr04	irgsp1_rep	CDS	30440459	30441208	.	-	0	Parent=Os04t0603200-01
Chr04	irgsp1_rep	CDS	30440239	30440310	.	-	0	Parent=Os04t0603200-01
Chr04	irgsp1_rep	CDS	30439938	30440088	.	-	0	Parent=Os04t0603200-01
Chr04	irgsp1_rep	CDS	30439824	30439840	.	-	2	Parent=Os04t0603200-01
Chr04	irgsp1_rep	three_prime_UTR	30439477	30439823	.	-	.	Parent=Os04t0603200-01
Chr04	irgsp1_rep	mRNA	30439605	30440685	.	-	.	ID=Os04t0603200-03;Name=Os04t0603200-03;Locus_id=Os04g0603200;CGSNL Gene Symbol=RMT1;CGSNL Gene Name=RING FINGER PROTEIN WITH MICROTUBULE-TARGETING DOMAIN 1;Oryzabase Gene Symbol Synonym(s)=OsRMT1;Oryzabase Gene Name Synonym(s)=RING finger protein with microtubule-targeting domain 1;Note=Similar to OSIGBa0118P15.2 protein.;Transcript_evidence=AK059404 (DDBJ%2C Best hit);ORF_evidence=Q01KK9 (UniProt);NIAS_FLcDNA=001-027-B09;Oryzabase=20374;Expression=AK059404;TENOR=Os04t0603200-03;KEGG=Os04t0603200-03
Chr04	irgsp1_rep	five_prime_UTR	30440684	30440685	.	-	.	Parent=Os04t0603200-03
Chr04	irgsp1_rep	CDS	30440459	30440683	.	-	0	Parent=Os04t0603200-03
Chr04	irgsp1_rep	CDS	30440239	30440310	.	-	0	Parent=Os04t0603200-03
Chr04	irgsp1_rep	CDS	30439938	30440088	.	-	0	Parent=Os04t0603200-03
Chr04	irgsp1_rep	CDS	30439824	30439840	.	-	2	Parent=Os04t0603200-03
Chr04	irgsp1_rep	three_prime_UTR	30439605	30439823	.	-	.	Parent=Os04t0603200-03
Chr04	irgsp1_rep	mRNA	30442140	30444221	.	+	.	ID=Os04t0603300-01;Name=Os04t0603300-01;Locus_id=Os04g0603300;Note=Hypothetical protein.;Transcript_evidence=AK106704 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-114-E07;Expression=AK106704;TENOR=Os04t0603300-01;KEGG=Os04t0603300-01
Chr04	irgsp1_rep	five_prime_UTR	30442140	30442853	.	+	.	Parent=Os04t0603300-01
Chr04	irgsp1_rep	CDS	30442854	30443180	.	+	0	Parent=Os04t0603300-01
Chr04	irgsp1_rep	three_prime_UTR	30443181	30444221	.	+	.	Parent=Os04t0603300-01
Chr04	irgsp1_rep	mRNA	30446932	30451385	.	-	.	ID=Os04t0603400-01;Name=Os04t0603400-01;Locus_id=Os04g0603400;Note=Similar to OSIGBa0118P15.3 protein.;Transcript_evidence=AK107076 (DDBJ%2C Best hit);ORF_evidence=Q01KK8 (UniProt);NIAS_FLcDNA=002-121-F04;Expression=AK107076;TENOR=Os04t0603400-01;KEGG=Os04t0603400-01
Chr04	irgsp1_rep	five_prime_UTR	30451204	30451385	.	-	.	Parent=Os04t0603400-01
Chr04	irgsp1_rep	CDS	30451119	30451203	.	-	0	Parent=Os04t0603400-01
Chr04	irgsp1_rep	CDS	30447338	30447531	.	-	2	Parent=Os04t0603400-01
Chr04	irgsp1_rep	three_prime_UTR	30446932	30447337	.	-	.	Parent=Os04t0603400-01
Chr04	irgsp1_rep	mRNA	30447571	30450418	.	-	.	ID=Os04t0603601-00;Name=Os04t0603601-00;Locus_id=Os04g0603601;Note=Non-protein coding transcript.;Transcript_evidence=CT835044 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os04t0603601-00
Chr04	irgsp1_rep	exon	30447571	30450418	.	-	.	Parent=Os04t0603601-00
Chr04	irgsp1_rep	mRNA	30462591	30463339	.	+	.	ID=Os04t0603800-01;Name=Os04t0603800-01;Locus_id=Os04g0603800;Note=Chromo domain containing protein.;Transcript_evidence=AK063616 (DDBJ%2C Best hit);ORF_evidence=Q01KK6 (UniProt);GO=Cellular Component: nucleus (GO:0005634);InterPro=Chromo domain/shadow (IPR000953),Chromo domain-like (IPR016197),Chromo domain (IPR023780);NIAS_FLcDNA=001-118-D11;Expression=AK063616;TENOR=Os04t0603800-01;KEGG=Os04t0603800-01
Chr04	irgsp1_rep	five_prime_UTR	30462591	30462592	.	+	.	Parent=Os04t0603800-01
Chr04	irgsp1_rep	CDS	30462593	30462964	.	+	0	Parent=Os04t0603800-01
Chr04	irgsp1_rep	three_prime_UTR	30462965	30463339	.	+	.	Parent=Os04t0603800-01
Chr04	irgsp1_rep	mRNA	30463548	30475160	.	+	.	ID=Os04t0603900-01;Name=Os04t0603900-01;Locus_id=Os04g0603900;Note=Hypothetical protein.;Transcript_evidence=AK099651 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013065F24;Expression=AK099651;TENOR=Os04t0603900-01;KEGG=Os04t0603900-01
Chr04	irgsp1_rep	five_prime_UTR	30463548	30463618	.	+	.	Parent=Os04t0603900-01
Chr04	irgsp1_rep	five_prime_UTR	30474235	30474397	.	+	.	Parent=Os04t0603900-01
Chr04	irgsp1_rep	five_prime_UTR	30474523	30474596	.	+	.	Parent=Os04t0603900-01
Chr04	irgsp1_rep	CDS	30474597	30474866	.	+	0	Parent=Os04t0603900-01
Chr04	irgsp1_rep	three_prime_UTR	30474867	30475160	.	+	.	Parent=Os04t0603900-01
Chr04	irgsp1_rep	mRNA	30463871	30473000	.	-	.	ID=Os04t0604000-01;Name=Os04t0604000-01;Locus_id=Os04g0604000;Oryzabase Gene Symbol Synonym(s)=VLN4%2C OsVLN4%2C Os VLN4;Oryzabase Gene Name Synonym(s)=VILLIN4%2C VILLIN 4;Note=Similar to Actin filament bundling protein P-115-ABP.;Transcript_evidence=AK072888 (DDBJ%2C Best hit);ORF_evidence=Q01KK5 (UniProt);GO=Biological Process: cytoskeleton organization (GO:0007010),Molecular Function: actin binding (GO:0003779);InterPro=Villin headpiece (IPR003128),Gelsolin (IPR007122),Gelsolin domain (IPR007123);NIAS_FLcDNA=J023149D17;Oryzabase=20286;Expression=AK072888;TENOR=Os04t0604000-01;KEGG=Os04t0604000-01
Chr04	irgsp1_rep	five_prime_UTR	30472890	30473000	.	-	.	Parent=Os04t0604000-01
Chr04	irgsp1_rep	five_prime_UTR	30472621	30472684	.	-	.	Parent=Os04t0604000-01
Chr04	irgsp1_rep	CDS	30472565	30472620	.	-	0	Parent=Os04t0604000-01
Chr04	irgsp1_rep	CDS	30471978	30472077	.	-	1	Parent=Os04t0604000-01
Chr04	irgsp1_rep	CDS	30471604	30471672	.	-	0	Parent=Os04t0604000-01
Chr04	irgsp1_rep	CDS	30471274	30471516	.	-	0	Parent=Os04t0604000-01
Chr04	irgsp1_rep	CDS	30471010	30471187	.	-	0	Parent=Os04t0604000-01
Chr04	irgsp1_rep	CDS	30470788	30470920	.	-	2	Parent=Os04t0604000-01
Chr04	irgsp1_rep	CDS	30470467	30470629	.	-	1	Parent=Os04t0604000-01
Chr04	irgsp1_rep	CDS	30469978	30470128	.	-	0	Parent=Os04t0604000-01
Chr04	irgsp1_rep	CDS	30469787	30469887	.	-	2	Parent=Os04t0604000-01
Chr04	irgsp1_rep	CDS	30468460	30468615	.	-	0	Parent=Os04t0604000-01
Chr04	irgsp1_rep	CDS	30468127	30468195	.	-	0	Parent=Os04t0604000-01
Chr04	irgsp1_rep	CDS	30467985	30468053	.	-	0	Parent=Os04t0604000-01
Chr04	irgsp1_rep	CDS	30467725	30467862	.	-	0	Parent=Os04t0604000-01
Chr04	irgsp1_rep	CDS	30467500	30467628	.	-	0	Parent=Os04t0604000-01
Chr04	irgsp1_rep	CDS	30466185	30466332	.	-	0	Parent=Os04t0604000-01
Chr04	irgsp1_rep	CDS	30466049	30466059	.	-	2	Parent=Os04t0604000-01
Chr04	irgsp1_rep	CDS	30465813	30465953	.	-	0	Parent=Os04t0604000-01
Chr04	irgsp1_rep	CDS	30465593	30465718	.	-	0	Parent=Os04t0604000-01
Chr04	irgsp1_rep	CDS	30465404	30465469	.	-	0	Parent=Os04t0604000-01
Chr04	irgsp1_rep	CDS	30464598	30464916	.	-	0	Parent=Os04t0604000-01
Chr04	irgsp1_rep	CDS	30464350	30464510	.	-	2	Parent=Os04t0604000-01
Chr04	irgsp1_rep	CDS	30464150	30464263	.	-	0	Parent=Os04t0604000-01
Chr04	irgsp1_rep	three_prime_UTR	30463871	30464149	.	-	.	Parent=Os04t0604000-01
Chr04	irgsp1_rep	mRNA	30463872	30472877	.	-	.	ID=Os04t0604000-02;Name=Os04t0604000-02;Locus_id=Os04g0604000;Oryzabase Gene Symbol Synonym(s)=VLN4%2C OsVLN4%2C Os VLN4;Oryzabase Gene Name Synonym(s)=VILLIN4%2C VILLIN 4;Note=Similar to Actin filament bundling protein P-115-ABP.;Transcript_evidence=AK100738 (DDBJ%2C Best hit);ORF_evidence=Q01KK5 (UniProt);GO=Biological Process: cytoskeleton organization (GO:0007010),Molecular Function: actin binding (GO:0003779);InterPro=Villin headpiece (IPR003128),Gelsolin (IPR007122),Gelsolin domain (IPR007123);NIAS_FLcDNA=J023118C24;Oryzabase=20286;Expression=AK100738;TENOR=Os04t0604000-02;KEGG=Os04t0604000-02
Chr04	irgsp1_rep	five_prime_UTR	30472621	30472877	.	-	.	Parent=Os04t0604000-02
Chr04	irgsp1_rep	CDS	30472565	30472620	.	-	0	Parent=Os04t0604000-02
Chr04	irgsp1_rep	CDS	30471978	30472077	.	-	1	Parent=Os04t0604000-02
Chr04	irgsp1_rep	CDS	30471604	30471672	.	-	0	Parent=Os04t0604000-02
Chr04	irgsp1_rep	CDS	30471274	30471516	.	-	0	Parent=Os04t0604000-02
Chr04	irgsp1_rep	CDS	30471010	30471187	.	-	0	Parent=Os04t0604000-02
Chr04	irgsp1_rep	CDS	30470788	30470920	.	-	2	Parent=Os04t0604000-02
Chr04	irgsp1_rep	CDS	30470467	30470629	.	-	1	Parent=Os04t0604000-02
Chr04	irgsp1_rep	CDS	30469978	30470128	.	-	0	Parent=Os04t0604000-02
Chr04	irgsp1_rep	CDS	30469787	30469887	.	-	2	Parent=Os04t0604000-02
Chr04	irgsp1_rep	CDS	30468460	30468615	.	-	0	Parent=Os04t0604000-02
Chr04	irgsp1_rep	CDS	30468127	30468195	.	-	0	Parent=Os04t0604000-02
Chr04	irgsp1_rep	CDS	30467985	30468053	.	-	0	Parent=Os04t0604000-02
Chr04	irgsp1_rep	CDS	30467725	30467862	.	-	0	Parent=Os04t0604000-02
Chr04	irgsp1_rep	CDS	30467500	30467628	.	-	0	Parent=Os04t0604000-02
Chr04	irgsp1_rep	CDS	30466185	30466332	.	-	0	Parent=Os04t0604000-02
Chr04	irgsp1_rep	CDS	30466049	30466059	.	-	2	Parent=Os04t0604000-02
Chr04	irgsp1_rep	CDS	30465813	30465953	.	-	0	Parent=Os04t0604000-02
Chr04	irgsp1_rep	CDS	30465593	30465718	.	-	0	Parent=Os04t0604000-02
Chr04	irgsp1_rep	CDS	30465404	30465469	.	-	0	Parent=Os04t0604000-02
Chr04	irgsp1_rep	CDS	30464598	30464916	.	-	0	Parent=Os04t0604000-02
Chr04	irgsp1_rep	CDS	30464350	30464510	.	-	2	Parent=Os04t0604000-02
Chr04	irgsp1_rep	CDS	30464150	30464263	.	-	0	Parent=Os04t0604000-02
Chr04	irgsp1_rep	three_prime_UTR	30463872	30464149	.	-	.	Parent=Os04t0604000-02
Chr04	irgsp1_rep	mRNA	30473630	30474901	.	-	.	ID=Os04t0604200-01;Name=Os04t0604200-01;Locus_id=Os04g0604200;CGSNL Gene Symbol=XTH6;CGSNL Gene Name=XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 6;Oryzabase Gene Symbol Synonym(s)=OsXTH6;Oryzabase Gene Name Synonym(s)=xyloglucan endotransglucosylase/hydrolase%2C xyloglucan endotransglucosylase 6;Note=Similar to Xyloglucan endotransglycosylase (Fragment).;Transcript_evidence=AK063614 (DDBJ%2C Best hit);ORF_evidence=Q01KK4 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: cellular glucan metabolic process (GO:0006073),Cellular Component: cell wall (GO:0005618),Cellular Component: apoplast (GO:0048046),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762);InterPro=Glycoside hydrolase%2C family 16 (IPR000757),Glycoside hydrolase%2C family 16%2C active site (IPR008263),Concanavalin A-like lectin/glucanase (IPR008985),Xyloglucan endo-transglycosylase%2C C-terminal (IPR010713),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Xyloglucan endotransglucosylase/hydrolase (IPR016455);NIAS_FLcDNA=001-118-D08;Oryzabase=6514;Expression=AK063614;TENOR=Os04t0604200-01;KEGG=Os04t0604200-01 (EC:2.4.1.207)
Chr04	irgsp1_rep	five_prime_UTR	30474839	30474901	.	-	.	Parent=Os04t0604200-01
Chr04	irgsp1_rep	CDS	30474551	30474838	.	-	0	Parent=Os04t0604200-01
Chr04	irgsp1_rep	CDS	30474240	30474439	.	-	0	Parent=Os04t0604200-01
Chr04	irgsp1_rep	CDS	30473726	30474119	.	-	1	Parent=Os04t0604200-01
Chr04	irgsp1_rep	three_prime_UTR	30473630	30473725	.	-	.	Parent=Os04t0604200-01
Chr04	irgsp1_rep	mRNA	30477844	30478399	.	-	.	ID=Os04t0604250-01;Name=Os04t0604250-01;Locus_id=Os04g0604250;Note=Conserved hypothetical protein.;Transcript_evidence=AK241611 (DDBJ%2C Best hit);ORF_evidence=NP_001174080.1 (RefSeq);NIAS_FLcDNA=J065185P18;TENOR=Os04t0604250-01;KEGG=Os04t0604250-01
Chr04	irgsp1_rep	five_prime_UTR	30478368	30478399	.	-	.	Parent=Os04t0604250-01
Chr04	irgsp1_rep	CDS	30478170	30478367	.	-	0	Parent=Os04t0604250-01
Chr04	irgsp1_rep	three_prime_UTR	30478082	30478169	.	-	.	Parent=Os04t0604250-01
Chr04	irgsp1_rep	three_prime_UTR	30477844	30478006	.	-	.	Parent=Os04t0604250-01
Chr04	irgsp1_rep	mRNA	30482503	30483293	.	+	.	ID=Os04t0604251-00;Name=Os04t0604251-00;Locus_id=Os04g0604251;Note=Non-protein coding transcript.;Transcript_evidence=BT019084 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0604251-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	exon	30482503	30482709	.	+	.	Parent=Os04t0604251-00
Chr04	irgsp1_rep	exon	30482826	30483013	.	+	.	Parent=Os04t0604251-00
Chr04	irgsp1_rep	exon	30483123	30483293	.	+	.	Parent=Os04t0604251-00
Chr04	irgsp1_rep	mRNA	30482211	30483492	.	-	.	ID=Os04t0604300-01;Name=Os04t0604300-01;Locus_id=Os04g0604300;CGSNL Gene Symbol=XTH9;CGSNL Gene Name=XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 9;Oryzabase Gene Symbol Synonym(s)=OsXTH9%2C OsXET9%2C XTH1%2C OsXTH1;Oryzabase Gene Name Synonym(s)=xyloglucan endotransglucosylase/hydrolase%2C xyloglucan endotransglucosylase 9%2C xyloglucan endotransglycosylase 1%2C XYLOGLUCAN ENDOTRANSGLUCOSYLASE-HYDROLASE 9;Note=Similar to Xyloglucan endotransglucosylase/hydrolase protein 24 precursor (EC 2.4.1.207) (At-XTH24) (XTH-24) (Meristem protein 5) (MERI-5 protein) (MERI5 protein) (Endo-xyloglucan transferase) (Xyloglucan endo-1%2C4-beta-D-glucanase).;Transcript_evidence=AK070734 (DDBJ%2C Best hit);ORF_evidence=Q8W4U8 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: cellular glucan metabolic process (GO:0006073),Cellular Component: cell wall (GO:0005618),Cellular Component: apoplast (GO:0048046),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762);InterPro=Glycoside hydrolase%2C family 16 (IPR000757),Glycoside hydrolase%2C family 16%2C active site (IPR008263),Concanavalin A-like lectin/glucanase (IPR008985),Xyloglucan endo-transglycosylase%2C C-terminal (IPR010713),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Xyloglucan endotransglucosylase/hydrolase (IPR016455);NIAS_FLcDNA=J023062B10;Oryzabase=6517;Expression=AK070734;TENOR=Os04t0604300-01;KEGG=Os04t0604300-01 (EC:2.4.1.207)
Chr04	irgsp1_rep	five_prime_UTR	30483425	30483492	.	-	.	Parent=Os04t0604300-01
Chr04	irgsp1_rep	CDS	30483140	30483424	.	-	0	Parent=Os04t0604300-01
Chr04	irgsp1_rep	CDS	30482844	30483043	.	-	0	Parent=Os04t0604300-01
Chr04	irgsp1_rep	CDS	30482370	30482727	.	-	1	Parent=Os04t0604300-01
Chr04	irgsp1_rep	three_prime_UTR	30482211	30482369	.	-	.	Parent=Os04t0604300-01
Chr04	irgsp1_rep	mRNA	30495547	30496068	.	+	.	ID=Os04t0604500-00;Name=Os04t0604500-00;Locus_id=Os04g0604500;Note=Similar to OSIGBa0118P15.9 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01KK2 (UniProt);TENOR=Os04t0604500-00;KEGG=Os04t0604500-00
Chr04	irgsp1_rep	CDS	30495547	30496068	.	+	0	Parent=Os04t0604500-00
Chr04	irgsp1_rep	mRNA	30510983	30513871	.	-	.	ID=Os04t0604600-01;Name=Os04t0604600-01;Locus_id=Os04g0604600;Note=Similar to OSIGBa0118P15.10 protein.;Transcript_evidence=AK069651 (DDBJ%2C Best hit);ORF_evidence=Q01KK1 (UniProt);NIAS_FLcDNA=J023031E09;TENOR=Os04t0604600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	30513404	30513871	.	-	.	Parent=Os04t0604600-01
Chr04	irgsp1_rep	CDS	30513394	30513403	.	-	0	Parent=Os04t0604600-01
Chr04	irgsp1_rep	CDS	30512730	30512896	.	-	2	Parent=Os04t0604600-01
Chr04	irgsp1_rep	CDS	30511825	30511962	.	-	0	Parent=Os04t0604600-01
Chr04	irgsp1_rep	three_prime_UTR	30511685	30511824	.	-	.	Parent=Os04t0604600-01
Chr04	irgsp1_rep	three_prime_UTR	30510983	30511587	.	-	.	Parent=Os04t0604600-01
Chr04	irgsp1_rep	mRNA	30518927	30520167	.	+	.	ID=Os04t0604800-00;Name=Os04t0604800-00;Locus_id=Os04g0604800;CGSNL Gene Symbol=XTH7;CGSNL Gene Name=XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 7;Oryzabase Gene Symbol Synonym(s)=OsXTH7;Oryzabase Gene Name Synonym(s)=xyloglucan endotransglucosylase/hydrolase%2C xyloglucan endotransglucosylase 7;Note=Similar to OSIGBa0118P15.11 protein.;Transcript_evidence=EF103136 (DDBJ);ORF_evidence=Q01KK0 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: cellular glucan metabolic process (GO:0006073),Cellular Component: cell wall (GO:0005618),Cellular Component: apoplast (GO:0048046),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762);InterPro=Glycoside hydrolase%2C family 16 (IPR000757),Glycoside hydrolase%2C family 16%2C active site (IPR008263),Beta-glucanase (IPR008264),Concanavalin A-like lectin/glucanase (IPR008985),Xyloglucan endo-transglycosylase%2C C-terminal (IPR010713),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Xyloglucan endotransglucosylase/hydrolase (IPR016455);Oryzabase=6515;TENOR=Os04t0604800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	30518927	30519226	.	+	0	Parent=Os04t0604800-00
Chr04	irgsp1_rep	CDS	30519416	30519615	.	+	0	Parent=Os04t0604800-00
Chr04	irgsp1_rep	CDS	30519730	30520114	.	+	1	Parent=Os04t0604800-00
Chr04	irgsp1_rep	three_prime_UTR	30520115	30520167	.	+	.	Parent=Os04t0604800-00
Chr04	irgsp1_rep	mRNA	30520357	30523556	.	-	.	ID=Os04t0604900-01;Name=Os04t0604900-01;Locus_id=Os04g0604900;CGSNL Gene Symbol=XTH16;CGSNL Gene Name=XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 16;Oryzabase Gene Symbol Synonym(s)=OsXTH16;Oryzabase Gene Name Synonym(s)=xyloglucan endotransglucosylase/hydrolase%2C xyloglucan endotransglucosylase 16;Note=Similar to Xyloglucan endotransglycosylase (Fragment).;Transcript_evidence=AK059203 (DDBJ%2C Best hit);ORF_evidence=Q01KJ9 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: cellular glucan metabolic process (GO:0006073),Cellular Component: cell wall (GO:0005618),Cellular Component: apoplast (GO:0048046),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762);InterPro=Glycoside hydrolase%2C family 16 (IPR000757),Glycoside hydrolase%2C family 16%2C active site (IPR008263),Concanavalin A-like lectin/glucanase (IPR008985),Xyloglucan endo-transglycosylase%2C C-terminal (IPR010713),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Xyloglucan endotransglucosylase/hydrolase (IPR016455);NIAS_FLcDNA=001-024-A11;Oryzabase=6496;Expression=AK059203;TENOR=Os04t0604900-01;KEGG=Os04t0604900-01 (EC:2.4.1.207)
Chr04	irgsp1_rep	five_prime_UTR	30523489	30523556	.	-	.	Parent=Os04t0604900-01
Chr04	irgsp1_rep	CDS	30523174	30523488	.	-	0	Parent=Os04t0604900-01
Chr04	irgsp1_rep	CDS	30522825	30523018	.	-	0	Parent=Os04t0604900-01
Chr04	irgsp1_rep	CDS	30520557	30521013	.	-	1	Parent=Os04t0604900-01
Chr04	irgsp1_rep	three_prime_UTR	30520357	30520556	.	-	.	Parent=Os04t0604900-01
Chr04	irgsp1_rep	mRNA	30520604	30523331	.	+	.	ID=Os04t0605000-00;Name=Os04t0605000-00;Locus_id=Os04g0605000;Note=Hypothetical protein.;Transcript_evidence=BT019084 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0605000-00
Chr04	irgsp1_rep	CDS	30520604	30520870	.	+	0	Parent=Os04t0605000-00
Chr04	irgsp1_rep	three_prime_UTR	30520871	30521000	.	+	.	Parent=Os04t0605000-00
Chr04	irgsp1_rep	three_prime_UTR	30522816	30523013	.	+	.	Parent=Os04t0605000-00
Chr04	irgsp1_rep	three_prime_UTR	30523178	30523331	.	+	.	Parent=Os04t0605000-00
Chr04	irgsp1_rep	mRNA	30545175	30546517	.	+	.	ID=Os04t0605100-01;Name=Os04t0605100-01;Locus_id=Os04g0605100;CGSNL Gene Symbol=WRKY68;CGSNL Gene Name=WRKY GENE 68;Oryzabase Gene Symbol Synonym(s)=OsWRKY68;Oryzabase Gene Name Synonym(s)=Rice WRKY gene68;Note=WRKY transcription factor 68.;Transcript_evidence=AK061266 (DDBJ%2C Best hit),AK072938 (DDBJ%2C Best hit);ORF_evidence=B6U7T4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657),Zn-cluster domain (IPR018872);NIAS_FLcDNA=006-212-C10,J023149N23;Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6583;TENOR=Os04t0605100-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	30545175	30545254	.	+	.	Parent=Os04t0605100-01
Chr04	irgsp1_rep	CDS	30545255	30545853	.	+	0	Parent=Os04t0605100-01
Chr04	irgsp1_rep	CDS	30545962	30546087	.	+	1	Parent=Os04t0605100-01
Chr04	irgsp1_rep	CDS	30546182	30546386	.	+	1	Parent=Os04t0605100-01
Chr04	irgsp1_rep	three_prime_UTR	30546387	30546517	.	+	.	Parent=Os04t0605100-01
Chr04	irgsp1_rep	mRNA	30550966	30552133	.	+	.	ID=Os04t0605200-01;Name=Os04t0605200-01;Locus_id=Os04g0605200;Note=Protein-tyrosine phosphatase%2C low molecular weight domain containing protein.;Transcript_evidence=AK108075 (DDBJ%2C Best hit);ORF_evidence=XP_002873471.1 (RefSeq);GO=Biological Process: protein dephosphorylation (GO:0006470),Molecular Function: aminoacyl-tRNA hydrolase activity (GO:0004045),Molecular Function: protein tyrosine phosphatase activity (GO:0004725);InterPro=Peptidyl-tRNA hydrolase%2C PTH2 (IPR002833),Protein-tyrosine phosphatase%2C low molecular weight (IPR017867),Peptidyl-tRNA hydrolase II domain (IPR023476);NIAS_FLcDNA=002-138-D10;Expression=AK108075;TENOR=Os04t0605200-01;KEGG=Os04t0605200-01
Chr04	irgsp1_rep	five_prime_UTR	30550966	30550977	.	+	.	Parent=Os04t0605200-01
Chr04	irgsp1_rep	CDS	30550978	30551350	.	+	0	Parent=Os04t0605200-01
Chr04	irgsp1_rep	CDS	30551727	30551911	.	+	2	Parent=Os04t0605200-01
Chr04	irgsp1_rep	three_prime_UTR	30551912	30552133	.	+	.	Parent=Os04t0605200-01
Chr04	irgsp1_rep	mRNA	30553037	30558393	.	-	.	ID=Os04t0605300-01;Name=Os04t0605300-01;Locus_id=Os04g0605300;Oryzabase Gene Symbol Synonym(s)=OsIRL1;Oryzabase Gene Name Synonym(s)=intracellular Ras-group-related LRR protein 1;Note=Leucine-rich repeat%2C typical subtype containing protein.;Transcript_evidence=AK066546 (DDBJ%2C Best hit);ORF_evidence=B6SU52 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591);NIAS_FLcDNA=J013070L16;Oryzabase=14432;Expression=AK066546;TENOR=Os04t0605300-01;KEGG=Os04t0605300-01
Chr04	irgsp1_rep	five_prime_UTR	30558282	30558393	.	-	.	Parent=Os04t0605300-01
Chr04	irgsp1_rep	five_prime_UTR	30556872	30556903	.	-	.	Parent=Os04t0605300-01
Chr04	irgsp1_rep	CDS	30556674	30556871	.	-	0	Parent=Os04t0605300-01
Chr04	irgsp1_rep	CDS	30555858	30556027	.	-	0	Parent=Os04t0605300-01
Chr04	irgsp1_rep	CDS	30553336	30554026	.	-	1	Parent=Os04t0605300-01
Chr04	irgsp1_rep	three_prime_UTR	30553037	30553335	.	-	.	Parent=Os04t0605300-01
Chr04	irgsp1_rep	mRNA	30553057	30556871	.	-	.	ID=Os04t0605300-02;Name=Os04t0605300-02;Locus_id=Os04g0605300;Oryzabase Gene Symbol Synonym(s)=OsIRL1;Oryzabase Gene Name Synonym(s)=intracellular Ras-group-related LRR protein 1;Note=Leucine-rich repeat%2C typical subtype containing protein.;Transcript_evidence=AK061732 (DDBJ%2C Best hit),AK104574 (DDBJ%2C Best hit);ORF_evidence=B6SU52 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591);NIAS_FLcDNA=001-038-C05,006-306-H11;Oryzabase=14432;Expression=AK061732;TENOR=Os04t0605300-02;KEGG=Os04t0605300-02
Chr04	irgsp1_rep	CDS	30556674	30556871	.	-	0	Parent=Os04t0605300-02
Chr04	irgsp1_rep	CDS	30555858	30556027	.	-	0	Parent=Os04t0605300-02
Chr04	irgsp1_rep	CDS	30553336	30554026	.	-	1	Parent=Os04t0605300-02
Chr04	irgsp1_rep	three_prime_UTR	30553057	30553335	.	-	.	Parent=Os04t0605300-02
Chr04	irgsp1_rep	mRNA	30572327	30584308	.	-	.	ID=Os04t0605500-01;Name=Os04t0605500-01;Locus_id=Os04g0605500;RAP-DB Gene Symbol Synonym(s)=ACA11%2C osACA11%2C OsACA6%2C OsACA5;RAP-DB Gene Name Synonym(s)=CA2+-ATPASE 11%2C Ca2+ P-Type ATPase 11;CGSNL Gene Symbol=ACA11;CGSNL Gene Name=CA2+-ATPASE 11;Oryzabase Gene Symbol Synonym(s)=osACA11%2C OsACA6%2C OsACA5%2C OsPM4ATP8;Oryzabase Gene Name Synonym(s)=Ca2+ P-Type ATPase 11;Note=P-type IIB Ca(2+) ATPase%2C Stress tolerance;Transcript_evidence=KF240826 (Swarna),AK067259;ORF_evidence=U3N024,Q7X8B5;GO=Biological Process: calcium ion transmembrane transport (GO:0070588),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: calcium-transporting ATPase activity (GO:0005388),Molecular Function: calmodulin binding (GO:0005516),Molecular Function: ATP binding (GO:0005524),Molecular Function: metal ion binding (GO:0046872),Cellular Component: membrane (GO:0016020),Cellular Component: integral component of membrane (GO:0016021);InterPro=P-type ATPase (IPR001757),P-type ATPase%2C subfamily IIB (IPR006408),Calcium-transporting P-type ATPase%2C N-terminal autoinhibitory domain (IPR024750),Cation-transporting P-type ATPase%2C N-terminal (IPR004014),P-type ATPase%2C A  domain (IPR008250),P-type ATPase%2C  transmembrane domain (IPR023298),HAD-like domain (IPR023214),P-type ATPase%2C cytoplasmic domain N (IPR023299),Cation-transporting P-type ATPase%2C C-terminal (IPR006068),P-type ATPase%2C phosphorylation site (IPR018303);NIAS_FLcDNA=J013095I07;Manual Curation=March 2%2C 2015;Literature_PMID=24128296,12805592,24286292;Oryzabase=13243;Expression=AK067259;TENOR=Os04t0605500-01;KEGG=Os04t0605500-01 (EC:3.6.3.8)
Chr04	irgsp1_rep	five_prime_UTR	30584126	30584308	.	-	.	Parent=Os04t0605500-01
Chr04	irgsp1_rep	CDS	30583973	30584125	.	-	0	Parent=Os04t0605500-01
Chr04	irgsp1_rep	CDS	30581754	30581870	.	-	0	Parent=Os04t0605500-01
Chr04	irgsp1_rep	CDS	30581626	30581683	.	-	0	Parent=Os04t0605500-01
Chr04	irgsp1_rep	CDS	30581242	30581342	.	-	2	Parent=Os04t0605500-01
Chr04	irgsp1_rep	CDS	30581038	30581169	.	-	0	Parent=Os04t0605500-01
Chr04	irgsp1_rep	CDS	30580858	30580947	.	-	0	Parent=Os04t0605500-01
Chr04	irgsp1_rep	CDS	30580489	30580558	.	-	0	Parent=Os04t0605500-01
Chr04	irgsp1_rep	CDS	30580134	30580204	.	-	2	Parent=Os04t0605500-01
Chr04	irgsp1_rep	CDS	30579976	30580059	.	-	0	Parent=Os04t0605500-01
Chr04	irgsp1_rep	CDS	30579819	30579896	.	-	0	Parent=Os04t0605500-01
Chr04	irgsp1_rep	CDS	30579671	30579742	.	-	0	Parent=Os04t0605500-01
Chr04	irgsp1_rep	CDS	30579398	30579481	.	-	0	Parent=Os04t0605500-01
Chr04	irgsp1_rep	CDS	30579245	30579327	.	-	0	Parent=Os04t0605500-01
Chr04	irgsp1_rep	CDS	30579066	30579174	.	-	1	Parent=Os04t0605500-01
Chr04	irgsp1_rep	CDS	30578929	30578984	.	-	0	Parent=Os04t0605500-01
Chr04	irgsp1_rep	CDS	30578812	30578854	.	-	1	Parent=Os04t0605500-01
Chr04	irgsp1_rep	CDS	30578651	30578734	.	-	0	Parent=Os04t0605500-01
Chr04	irgsp1_rep	CDS	30578397	30578534	.	-	0	Parent=Os04t0605500-01
Chr04	irgsp1_rep	CDS	30578107	30578172	.	-	0	Parent=Os04t0605500-01
Chr04	irgsp1_rep	CDS	30577914	30578012	.	-	0	Parent=Os04t0605500-01
Chr04	irgsp1_rep	CDS	30577356	30577472	.	-	0	Parent=Os04t0605500-01
Chr04	irgsp1_rep	CDS	30577112	30577279	.	-	0	Parent=Os04t0605500-01
Chr04	irgsp1_rep	CDS	30576263	30576322	.	-	0	Parent=Os04t0605500-01
Chr04	irgsp1_rep	CDS	30575933	30576094	.	-	0	Parent=Os04t0605500-01
Chr04	irgsp1_rep	CDS	30574912	30575028	.	-	0	Parent=Os04t0605500-01
Chr04	irgsp1_rep	CDS	30574713	30574811	.	-	0	Parent=Os04t0605500-01
Chr04	irgsp1_rep	CDS	30574504	30574641	.	-	0	Parent=Os04t0605500-01
Chr04	irgsp1_rep	CDS	30574312	30574412	.	-	0	Parent=Os04t0605500-01
Chr04	irgsp1_rep	CDS	30573818	30573863	.	-	1	Parent=Os04t0605500-01
Chr04	irgsp1_rep	CDS	30573606	30573740	.	-	0	Parent=Os04t0605500-01
Chr04	irgsp1_rep	CDS	30573354	30573461	.	-	0	Parent=Os04t0605500-01
Chr04	irgsp1_rep	CDS	30573144	30573235	.	-	0	Parent=Os04t0605500-01
Chr04	irgsp1_rep	CDS	30572889	30572980	.	-	1	Parent=Os04t0605500-01
Chr04	irgsp1_rep	CDS	30572464	30572507	.	-	2	Parent=Os04t0605500-01
Chr04	irgsp1_rep	three_prime_UTR	30572327	30572463	.	-	.	Parent=Os04t0605500-01
Chr04	irgsp1_rep	mRNA	30572219	30584268	.	-	.	ID=Os04t0605500-02;Name=Os04t0605500-02;Locus_id=Os04g0605500;CGSNL Gene Symbol=ACA11;CGSNL Gene Name=CA2+-ATPASE 11;Oryzabase Gene Symbol Synonym(s)=osACA11%2C OsACA6%2C OsACA5%2C OsPM4ATP8;Oryzabase Gene Name Synonym(s)=Ca2+ P-Type ATPase 11;Note=Similar to Calcium-transporting ATPase 8%2C plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 8).;Transcript_evidence=AK120495 (DDBJ%2C Best hit);ORF_evidence=XP_002325251.1 (RefSeq);GO=Biological Process: ATP biosynthetic process (GO:0006754),Biological Process: cation transport (GO:0006812),Biological Process: metabolic process (GO:0008152),Biological Process: calcium ion transmembrane transport (GO:0070588),Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: calcium-transporting ATPase activity (GO:0005388),Molecular Function: calmodulin binding (GO:0005516),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662),Molecular Function: metal ion binding (GO:0046872);InterPro=ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),ATPase%2C P-type cation-transporter%2C N-terminal (IPR004014),Haloacid dehalogenase-like hydrolase (IPR005834),ATPase%2C P-type cation-transporter%2C C-terminal (IPR006068),ATPase%2C P-type cation exchange%2C alpha subunit (IPR006069),ATPase%2C P-type%2C calcium-transporting%2C PMCA-type (IPR006408),ATPase%2C P-type%2C ATPase-associated domain (IPR008250),ATPase%2C P-type phosphorylation site (IPR018303),HAD-like domain (IPR023214),ATPase%2C P-type%2C  transmembrane domain (IPR023298),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C  P-type%2C cytoplasmic transduction domain A (IPR023300),Calcium-transporting ATPase%2C N-terminal autoinhibitory domain (IPR024750);NIAS_FLcDNA=J013120H18;Oryzabase=13243;Expression=AK120495;TENOR=Os04t0605500-02;KEGG=Os04t0605500-02 (EC:3.6.3.8)
Chr04	irgsp1_rep	five_prime_UTR	30584126	30584268	.	-	.	Parent=Os04t0605500-02
Chr04	irgsp1_rep	CDS	30583973	30584125	.	-	0	Parent=Os04t0605500-02
Chr04	irgsp1_rep	CDS	30581754	30581870	.	-	0	Parent=Os04t0605500-02
Chr04	irgsp1_rep	CDS	30581626	30581683	.	-	0	Parent=Os04t0605500-02
Chr04	irgsp1_rep	CDS	30581242	30581342	.	-	2	Parent=Os04t0605500-02
Chr04	irgsp1_rep	CDS	30581038	30581169	.	-	0	Parent=Os04t0605500-02
Chr04	irgsp1_rep	CDS	30580858	30580947	.	-	0	Parent=Os04t0605500-02
Chr04	irgsp1_rep	CDS	30580489	30580558	.	-	0	Parent=Os04t0605500-02
Chr04	irgsp1_rep	CDS	30580134	30580204	.	-	2	Parent=Os04t0605500-02
Chr04	irgsp1_rep	CDS	30579976	30580059	.	-	0	Parent=Os04t0605500-02
Chr04	irgsp1_rep	CDS	30579819	30579896	.	-	0	Parent=Os04t0605500-02
Chr04	irgsp1_rep	CDS	30579671	30579742	.	-	0	Parent=Os04t0605500-02
Chr04	irgsp1_rep	CDS	30579398	30579481	.	-	0	Parent=Os04t0605500-02
Chr04	irgsp1_rep	CDS	30579245	30579327	.	-	0	Parent=Os04t0605500-02
Chr04	irgsp1_rep	CDS	30579066	30579174	.	-	1	Parent=Os04t0605500-02
Chr04	irgsp1_rep	CDS	30578929	30578984	.	-	0	Parent=Os04t0605500-02
Chr04	irgsp1_rep	CDS	30578812	30578854	.	-	1	Parent=Os04t0605500-02
Chr04	irgsp1_rep	CDS	30578651	30578734	.	-	0	Parent=Os04t0605500-02
Chr04	irgsp1_rep	CDS	30578397	30578534	.	-	0	Parent=Os04t0605500-02
Chr04	irgsp1_rep	CDS	30578107	30578172	.	-	0	Parent=Os04t0605500-02
Chr04	irgsp1_rep	CDS	30577914	30578012	.	-	0	Parent=Os04t0605500-02
Chr04	irgsp1_rep	CDS	30577356	30577472	.	-	0	Parent=Os04t0605500-02
Chr04	irgsp1_rep	CDS	30577112	30577279	.	-	0	Parent=Os04t0605500-02
Chr04	irgsp1_rep	CDS	30576263	30576322	.	-	0	Parent=Os04t0605500-02
Chr04	irgsp1_rep	CDS	30575933	30576094	.	-	0	Parent=Os04t0605500-02
Chr04	irgsp1_rep	CDS	30574912	30575028	.	-	0	Parent=Os04t0605500-02
Chr04	irgsp1_rep	CDS	30574713	30574811	.	-	0	Parent=Os04t0605500-02
Chr04	irgsp1_rep	CDS	30574504	30574641	.	-	0	Parent=Os04t0605500-02
Chr04	irgsp1_rep	CDS	30574312	30574412	.	-	0	Parent=Os04t0605500-02
Chr04	irgsp1_rep	CDS	30573818	30573863	.	-	1	Parent=Os04t0605500-02
Chr04	irgsp1_rep	CDS	30573606	30573740	.	-	0	Parent=Os04t0605500-02
Chr04	irgsp1_rep	CDS	30573354	30573461	.	-	0	Parent=Os04t0605500-02
Chr04	irgsp1_rep	CDS	30573144	30573235	.	-	0	Parent=Os04t0605500-02
Chr04	irgsp1_rep	CDS	30572889	30572980	.	-	1	Parent=Os04t0605500-02
Chr04	irgsp1_rep	CDS	30572464	30572507	.	-	2	Parent=Os04t0605500-02
Chr04	irgsp1_rep	three_prime_UTR	30572219	30572463	.	-	.	Parent=Os04t0605500-02
Chr04	irgsp1_rep	mRNA	30572141	30578174	.	-	.	ID=Os04t0605500-03;Name=Os04t0605500-03;Locus_id=Os04g0605500;CGSNL Gene Symbol=ACA11;CGSNL Gene Name=CA2+-ATPASE 11;Oryzabase Gene Symbol Synonym(s)=osACA11%2C OsACA6%2C OsACA5%2C OsPM4ATP8;Oryzabase Gene Name Synonym(s)=Ca2+ P-Type ATPase 11;Note=Similar to P-type ATPase (Fragment).;Transcript_evidence=AK120057 (DDBJ%2C Best hit);ORF_evidence=Q94IM5 (UniProt);GO=Biological Process: ATP biosynthetic process (GO:0006754),Biological Process: cation transport (GO:0006812),Biological Process: metabolic process (GO:0008152),Biological Process: calcium ion transmembrane transport (GO:0070588),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: calcium-transporting ATPase activity (GO:0005388),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C catalyzing transmembrane movement of substances (GO:0016820);InterPro=ATPase%2C P-type%2C H+ transporting proton pump (IPR000695),ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),Haloacid dehalogenase-like hydrolase (IPR005834),ATPase%2C P-type cation-transporter%2C C-terminal (IPR006068),ATPase%2C P-type%2C calcium-transporting%2C PMCA-type (IPR006408),HAD-like domain (IPR023214),ATPase%2C P-type%2C  transmembrane domain (IPR023298),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C cation-transporting%2C domain N (IPR023306);NIAS_FLcDNA=J013000P10;Oryzabase=13243;Expression=AK120057;TENOR=Os04t0605500-03;KEGG=Os04t0605500-03 (EC:3.6.3.8)
Chr04	irgsp1_rep	five_prime_UTR	30578173	30578174	.	-	.	Parent=Os04t0605500-03
Chr04	irgsp1_rep	CDS	30578107	30578172	.	-	0	Parent=Os04t0605500-03
Chr04	irgsp1_rep	CDS	30577914	30578012	.	-	0	Parent=Os04t0605500-03
Chr04	irgsp1_rep	CDS	30577356	30577472	.	-	0	Parent=Os04t0605500-03
Chr04	irgsp1_rep	CDS	30577112	30577279	.	-	0	Parent=Os04t0605500-03
Chr04	irgsp1_rep	CDS	30576263	30576322	.	-	0	Parent=Os04t0605500-03
Chr04	irgsp1_rep	CDS	30575933	30576094	.	-	0	Parent=Os04t0605500-03
Chr04	irgsp1_rep	CDS	30574912	30575028	.	-	0	Parent=Os04t0605500-03
Chr04	irgsp1_rep	CDS	30574713	30574811	.	-	0	Parent=Os04t0605500-03
Chr04	irgsp1_rep	CDS	30574504	30574641	.	-	0	Parent=Os04t0605500-03
Chr04	irgsp1_rep	CDS	30574312	30574412	.	-	0	Parent=Os04t0605500-03
Chr04	irgsp1_rep	CDS	30573818	30573863	.	-	1	Parent=Os04t0605500-03
Chr04	irgsp1_rep	CDS	30573606	30573740	.	-	0	Parent=Os04t0605500-03
Chr04	irgsp1_rep	CDS	30573354	30573461	.	-	0	Parent=Os04t0605500-03
Chr04	irgsp1_rep	CDS	30573144	30573235	.	-	0	Parent=Os04t0605500-03
Chr04	irgsp1_rep	CDS	30572889	30572980	.	-	1	Parent=Os04t0605500-03
Chr04	irgsp1_rep	CDS	30572464	30572507	.	-	2	Parent=Os04t0605500-03
Chr04	irgsp1_rep	three_prime_UTR	30572141	30572463	.	-	.	Parent=Os04t0605500-03
Chr04	irgsp1_rep	mRNA	30599917	30602262	.	+	.	ID=Os04t0605900-01;Name=Os04t0605900-01;Locus_id=Os04g0605900;CGSNL Gene Symbol=RPL7;CGSNL Gene Name=RIBOSOMAL PROTEIN L7;Oryzabase Gene Symbol Synonym(s)=rpl7;Oryzabase Gene Name Synonym(s)=ribosomal protein L7%2C 60S ribosomal protein L7;Note=Similar to 60S ribosomal protein L7-2.;Transcript_evidence=AK073472 (DDBJ%2C Best hit);ORF_evidence=B4F8K1 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L7%2C eukaryotic (IPR005998),Ribosomal protein L30%2C N-terminal (IPR012988),Ribosomal protein L30%2C ferredoxin-like fold domain (IPR016082),Ribosomal protein L30%2C conserved site (IPR018038);NIAS_FLcDNA=J033044G24;Oryzabase=16010;Expression=AK073472;TENOR=Os04t0605900-01;KEGG=Os04t0605900-01
Chr04	irgsp1_rep	five_prime_UTR	30599917	30600030	.	+	.	Parent=Os04t0605900-01
Chr04	irgsp1_rep	CDS	30600133	30600312	.	+	0	Parent=Os04t0605900-01
Chr04	irgsp1_rep	CDS	30600909	30601006	.	+	0	Parent=Os04t0605900-01
Chr04	irgsp1_rep	CDS	30601105	30601162	.	+	1	Parent=Os04t0605900-01
Chr04	irgsp1_rep	CDS	30601251	30601330	.	+	0	Parent=Os04t0605900-01
Chr04	irgsp1_rep	CDS	30601678	30601780	.	+	1	Parent=Os04t0605900-01
Chr04	irgsp1_rep	CDS	30601857	30602072	.	+	0	Parent=Os04t0605900-01
Chr04	irgsp1_rep	three_prime_UTR	30602073	30602262	.	+	.	Parent=Os04t0605900-01
Chr04	irgsp1_rep	mRNA	30601280	30602116	.	-	.	ID=Os04t0605925-00;Name=Os04t0605925-00;Locus_id=Os04g0605925;Note=Conserved hypothetical protein.;Transcript_evidence=AM939971 (DDBJ);ORF_evidence=B7ZZP0 (UniProt);TENOR=Os04t0605925-00
Chr04	irgsp1_rep	five_prime_UTR	30602115	30602116	.	-	.	Parent=Os04t0605925-00
Chr04	irgsp1_rep	CDS	30601875	30602114	.	-	0	Parent=Os04t0605925-00
Chr04	irgsp1_rep	CDS	30601770	30601796	.	-	0	Parent=Os04t0605925-00
Chr04	irgsp1_rep	three_prime_UTR	30601682	30601769	.	-	.	Parent=Os04t0605925-00
Chr04	irgsp1_rep	three_prime_UTR	30601280	30601335	.	-	.	Parent=Os04t0605925-00
Chr04	irgsp1_rep	mRNA	30608872	30610396	.	-	.	ID=Os04t0606000-01;Name=Os04t0606000-01;Locus_id=Os04g0606000;Note=Transferase family protein.;Transcript_evidence=AK073495 (DDBJ%2C Best hit),AK105836 (DDBJ%2C Best hit);ORF_evidence=B6SZH6 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J033044F12,001-203-E12;TENOR=Os04t0606000-01
Chr04	irgsp1_rep	five_prime_UTR	30610373	30610396	.	-	.	Parent=Os04t0606000-01
Chr04	irgsp1_rep	CDS	30608972	30610372	.	-	0	Parent=Os04t0606000-01
Chr04	irgsp1_rep	three_prime_UTR	30608872	30608971	.	-	.	Parent=Os04t0606000-01
Chr04	irgsp1_rep	mRNA	30615558	30616313	.	-	.	ID=Os04t0606200-01;Name=Os04t0606200-01;Locus_id=Os04g0606200;Note=Similar to OSIGBa0113I13.1 protein.;Transcript_evidence=AK066921 (DDBJ%2C Best hit),AK066753 (DDBJ%2C Best hit);ORF_evidence=Q01KE6 (UniProt);NIAS_FLcDNA=J013090O07,J013078K12;Expression=AK066921;TENOR=Os04t0606200-01;KEGG=Os04t0606200-01
Chr04	irgsp1_rep	five_prime_UTR	30616176	30616313	.	-	.	Parent=Os04t0606200-01
Chr04	irgsp1_rep	CDS	30615960	30616175	.	-	0	Parent=Os04t0606200-01
Chr04	irgsp1_rep	three_prime_UTR	30615558	30615959	.	-	.	Parent=Os04t0606200-01
Chr04	irgsp1_rep	mRNA	30621163	30628349	.	-	.	ID=Os04t0606400-01;Name=Os04t0606400-01;Locus_id=Os04g0606400;Note=Similar to Mannosyl-oligosaccharide 1%2C2-alpha-mannosidase (EC 3.2.1.113).;Transcript_evidence=AK102588 (DDBJ%2C Best hit);ORF_evidence=Q01KE5 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: mannosyl-oligosaccharide 1%2C2-alpha-mannosidase activity (GO:0004571),Molecular Function: calcium ion binding (GO:0005509);InterPro=Glycoside hydrolase%2C family 47 (IPR001382);NIAS_FLcDNA=J033098F09;Expression=AK102588;TENOR=Os04t0606400-01;KEGG=Os04t0606400-01 (EC:3.2.1.113)
Chr04	irgsp1_rep	five_prime_UTR	30628198	30628349	.	-	.	Parent=Os04t0606400-01
Chr04	irgsp1_rep	CDS	30628033	30628197	.	-	0	Parent=Os04t0606400-01
Chr04	irgsp1_rep	CDS	30626292	30626339	.	-	0	Parent=Os04t0606400-01
Chr04	irgsp1_rep	CDS	30626038	30626211	.	-	0	Parent=Os04t0606400-01
Chr04	irgsp1_rep	CDS	30625823	30625935	.	-	0	Parent=Os04t0606400-01
Chr04	irgsp1_rep	CDS	30625265	30625330	.	-	1	Parent=Os04t0606400-01
Chr04	irgsp1_rep	CDS	30624944	30625115	.	-	1	Parent=Os04t0606400-01
Chr04	irgsp1_rep	CDS	30624378	30624467	.	-	0	Parent=Os04t0606400-01
Chr04	irgsp1_rep	CDS	30623172	30623296	.	-	0	Parent=Os04t0606400-01
Chr04	irgsp1_rep	CDS	30622892	30622957	.	-	1	Parent=Os04t0606400-01
Chr04	irgsp1_rep	CDS	30622663	30622771	.	-	1	Parent=Os04t0606400-01
Chr04	irgsp1_rep	CDS	30622456	30622557	.	-	0	Parent=Os04t0606400-01
Chr04	irgsp1_rep	CDS	30622164	30622244	.	-	0	Parent=Os04t0606400-01
Chr04	irgsp1_rep	CDS	30621908	30622078	.	-	0	Parent=Os04t0606400-01
Chr04	irgsp1_rep	CDS	30621567	30621803	.	-	0	Parent=Os04t0606400-01
Chr04	irgsp1_rep	three_prime_UTR	30621163	30621566	.	-	.	Parent=Os04t0606400-01
Chr04	irgsp1_rep	mRNA	30621166	30626102	.	-	.	ID=Os04t0606400-02;Name=Os04t0606400-02;Locus_id=Os04g0606400;Note=Similar to OSIGBa0113I13.2 protein.;Transcript_evidence=AK060852 (DDBJ%2C Best hit);ORF_evidence=Q01KE5 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: mannosyl-oligosaccharide 1%2C2-alpha-mannosidase activity (GO:0004571),Molecular Function: calcium ion binding (GO:0005509);InterPro=Glycoside hydrolase%2C family 47 (IPR001382);NIAS_FLcDNA=001-034-E10;Expression=AK060852;TENOR=Os04t0606400-02;KEGG=Os04t0606400-02 (EC:3.2.1.113)
Chr04	irgsp1_rep	five_prime_UTR	30626101	30626102	.	-	.	Parent=Os04t0606400-02
Chr04	irgsp1_rep	CDS	30626038	30626100	.	-	0	Parent=Os04t0606400-02
Chr04	irgsp1_rep	CDS	30625823	30625935	.	-	0	Parent=Os04t0606400-02
Chr04	irgsp1_rep	CDS	30625265	30625330	.	-	1	Parent=Os04t0606400-02
Chr04	irgsp1_rep	CDS	30624944	30625115	.	-	1	Parent=Os04t0606400-02
Chr04	irgsp1_rep	CDS	30624378	30624467	.	-	0	Parent=Os04t0606400-02
Chr04	irgsp1_rep	CDS	30623172	30623296	.	-	0	Parent=Os04t0606400-02
Chr04	irgsp1_rep	CDS	30622892	30622957	.	-	1	Parent=Os04t0606400-02
Chr04	irgsp1_rep	CDS	30622663	30622771	.	-	1	Parent=Os04t0606400-02
Chr04	irgsp1_rep	CDS	30622456	30622557	.	-	0	Parent=Os04t0606400-02
Chr04	irgsp1_rep	CDS	30622164	30622244	.	-	0	Parent=Os04t0606400-02
Chr04	irgsp1_rep	CDS	30621908	30622078	.	-	0	Parent=Os04t0606400-02
Chr04	irgsp1_rep	CDS	30621567	30621803	.	-	0	Parent=Os04t0606400-02
Chr04	irgsp1_rep	three_prime_UTR	30621166	30621566	.	-	.	Parent=Os04t0606400-02
Chr04	irgsp1_rep	mRNA	30629911	30631711	.	+	.	ID=Os04t0606425-00;Name=Os04t0606425-00;Locus_id=Os04g0606425;Note=Non-protein coding transcript.;Transcript_evidence=EU948300 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0606425-00
Chr04	irgsp1_rep	exon	30629911	30630011	.	+	.	Parent=Os04t0606425-00
Chr04	irgsp1_rep	exon	30630071	30630119	.	+	.	Parent=Os04t0606425-00
Chr04	irgsp1_rep	exon	30631266	30631711	.	+	.	Parent=Os04t0606425-00
Chr04	irgsp1_rep	mRNA	30629734	30630680	.	-	.	ID=Os04t0606450-01;Name=Os04t0606450-01;Locus_id=Os04g0606450;Oryzabase Gene Symbol Synonym(s)=OsLig4%2C Lig4;Oryzabase Gene Name Synonym(s)=DNA ligase 4%2C rice homolog of Lig4;Note=Similar to DNA ligase.;Transcript_evidence=AK242148 (DDBJ%2C Best hit);ORF_evidence=Q01KE4 (UniProt);NIAS_FLcDNA=J075153B16;Oryzabase=11609;TENOR=Os04t0606450-01;KEGG=Os04t0606450-01
Chr04	irgsp1_rep	five_prime_UTR	30630679	30630680	.	-	.	Parent=Os04t0606450-01
Chr04	irgsp1_rep	CDS	30629911	30630678	.	-	0	Parent=Os04t0606450-01
Chr04	irgsp1_rep	three_prime_UTR	30629734	30629910	.	-	.	Parent=Os04t0606450-01
Chr04	irgsp1_rep	mRNA	30642129	30645845	.	-	.	ID=Os04t0606500-01;Name=Os04t0606500-01;Locus_id=Os04g0606500;Note=Similar to OSIGBa0113I13.4 protein.;Transcript_evidence=AK068251 (DDBJ%2C Best hit);ORF_evidence=Q01KE3 (UniProt);NIAS_FLcDNA=J013145H18;TENOR=Os04t0606500-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	30645552	30645845	.	-	.	Parent=Os04t0606500-01
Chr04	irgsp1_rep	five_prime_UTR	30644436	30644573	.	-	.	Parent=Os04t0606500-01
Chr04	irgsp1_rep	CDS	30643548	30644435	.	-	0	Parent=Os04t0606500-01
Chr04	irgsp1_rep	CDS	30643172	30643327	.	-	0	Parent=Os04t0606500-01
Chr04	irgsp1_rep	CDS	30642783	30642994	.	-	0	Parent=Os04t0606500-01
Chr04	irgsp1_rep	CDS	30642475	30642667	.	-	1	Parent=Os04t0606500-01
Chr04	irgsp1_rep	three_prime_UTR	30642129	30642474	.	-	.	Parent=Os04t0606500-01
Chr04	irgsp1_rep	mRNA	30673925	30674285	.	-	.	ID=Os04t0606601-00;Name=Os04t0606601-00;Locus_id=Os04g0606601;Note=Hypothetical conserved gene.;Transcript_evidence=CT835826 (DDBJ%2C Secondary hit);ORF_evidence=B9G4Z5 (UniProt);TENOR=Os04t0606601-00;KEGG=Os04t0606601-00
Chr04	irgsp1_rep	five_prime_UTR	30674285	30674285	.	-	.	Parent=Os04t0606601-00
Chr04	irgsp1_rep	CDS	30674063	30674284	.	-	0	Parent=Os04t0606601-00
Chr04	irgsp1_rep	three_prime_UTR	30673925	30674062	.	-	.	Parent=Os04t0606601-00
Chr04	irgsp1_rep	mRNA	30678978	30681789	.	-	.	ID=Os04t0606700-01;Name=Os04t0606700-01;Locus_id=Os04g0606700;Note=Similar to OSIGBa0113I13.5 protein.;Transcript_evidence=AK103790 (DDBJ%2C Best hit);ORF_evidence=Q01KE2 (UniProt);NIAS_FLcDNA=J033145L05;Expression=AK103790;TENOR=Os04t0606700-01;KEGG=Os04t0606700-01
Chr04	irgsp1_rep	five_prime_UTR	30681749	30681789	.	-	.	Parent=Os04t0606700-01
Chr04	irgsp1_rep	CDS	30681304	30681748	.	-	0	Parent=Os04t0606700-01
Chr04	irgsp1_rep	CDS	30680066	30680133	.	-	2	Parent=Os04t0606700-01
Chr04	irgsp1_rep	three_prime_UTR	30680042	30680065	.	-	.	Parent=Os04t0606700-01
Chr04	irgsp1_rep	three_prime_UTR	30678978	30679494	.	-	.	Parent=Os04t0606700-01
Chr04	irgsp1_rep	mRNA	30682174	30685122	.	+	.	ID=Os04t0606800-01;Name=Os04t0606800-01;Locus_id=Os04g0606800;Note=Similar to OSIGBa0113I13.6 protein.;Transcript_evidence=AK072824 (DDBJ%2C Best hit);ORF_evidence=Q01KE1 (UniProt);NIAS_FLcDNA=J023134C17;Expression=AK072824;TENOR=Os04t0606800-01;KEGG=Os04t0606800-01
Chr04	irgsp1_rep	five_prime_UTR	30682174	30682238	.	+	.	Parent=Os04t0606800-01
Chr04	irgsp1_rep	CDS	30682239	30682337	.	+	0	Parent=Os04t0606800-01
Chr04	irgsp1_rep	CDS	30682754	30682929	.	+	0	Parent=Os04t0606800-01
Chr04	irgsp1_rep	CDS	30683747	30683962	.	+	1	Parent=Os04t0606800-01
Chr04	irgsp1_rep	CDS	30684062	30684204	.	+	1	Parent=Os04t0606800-01
Chr04	irgsp1_rep	CDS	30684674	30684876	.	+	2	Parent=Os04t0606800-01
Chr04	irgsp1_rep	three_prime_UTR	30684877	30685122	.	+	.	Parent=Os04t0606800-01
Chr04	irgsp1_rep	mRNA	30685534	30687856	.	-	.	ID=Os04t0606900-01;Name=Os04t0606900-01;Locus_id=Os04g0606900;Note=SPOUT methyltransferase%2C predicted domain containing protein.;Transcript_evidence=AK122125 (DDBJ%2C Best hit),AK060169 (DDBJ%2C Best hit);ORF_evidence=Q01KE0 (UniProt);GO=Biological Process: rRNA processing (GO:0006364),Cellular Component: cytoplasm (GO:0005737),Molecular Function: methyltransferase activity (GO:0008168);InterPro=SPOUT methyltransferase%2C predicted (IPR003742);NIAS_FLcDNA=J033132B15,006-311-E09;Expression=AK122125;TENOR=Os04t0606900-01;KEGG=Os04t0606900-01
Chr04	irgsp1_rep	five_prime_UTR	30687794	30687856	.	-	.	Parent=Os04t0606900-01
Chr04	irgsp1_rep	CDS	30687709	30687793	.	-	0	Parent=Os04t0606900-01
Chr04	irgsp1_rep	CDS	30687496	30687527	.	-	2	Parent=Os04t0606900-01
Chr04	irgsp1_rep	CDS	30686940	30687082	.	-	0	Parent=Os04t0606900-01
Chr04	irgsp1_rep	CDS	30686641	30686707	.	-	1	Parent=Os04t0606900-01
Chr04	irgsp1_rep	CDS	30686461	30686538	.	-	0	Parent=Os04t0606900-01
Chr04	irgsp1_rep	CDS	30686198	30686343	.	-	0	Parent=Os04t0606900-01
Chr04	irgsp1_rep	CDS	30685913	30685952	.	-	1	Parent=Os04t0606900-01
Chr04	irgsp1_rep	three_prime_UTR	30685808	30685912	.	-	.	Parent=Os04t0606900-01
Chr04	irgsp1_rep	three_prime_UTR	30685534	30685705	.	-	.	Parent=Os04t0606900-01
Chr04	irgsp1_rep	mRNA	30688131	30689790	.	-	.	ID=Os04t0607000-02;Name=Os04t0607000-02;Locus_id=Os04g0607000;Note=PAP fibrillin family protein.;Transcript_evidence=AK059884 (DDBJ%2C Best hit),AK104482 (DDBJ%2C Best hit);ORF_evidence=Q01KD9 (UniProt);NIAS_FLcDNA=006-208-A09,006-301-H04;Expression=AK059884;TENOR=Os04t0607000-02;KEGG=Os04t0607000-02
Chr04	irgsp1_rep	five_prime_UTR	30689753	30689790	.	-	.	Parent=Os04t0607000-02
Chr04	irgsp1_rep	CDS	30689582	30689752	.	-	0	Parent=Os04t0607000-02
Chr04	irgsp1_rep	CDS	30689070	30689193	.	-	0	Parent=Os04t0607000-02
Chr04	irgsp1_rep	CDS	30688708	30688884	.	-	2	Parent=Os04t0607000-02
Chr04	irgsp1_rep	CDS	30688406	30688593	.	-	2	Parent=Os04t0607000-02
Chr04	irgsp1_rep	three_prime_UTR	30688131	30688405	.	-	.	Parent=Os04t0607000-02
Chr04	irgsp1_rep	mRNA	30690638	30696691	.	-	.	ID=Os04t0607100-01;Name=Os04t0607100-01;Locus_id=Os04g0607100;Note=Similar to OSIGBa0113I13.9 protein.;Transcript_evidence=AK067935 (DDBJ%2C Best hit);ORF_evidence=Q01KD8 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: acetylglucosaminyltransferase activity (GO:0008375);InterPro=Glycosyl transferase%2C family 14 (IPR003406);NIAS_FLcDNA=J013128L03;TENOR=Os04t0607100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	30696312	30696691	.	-	.	Parent=Os04t0607100-01
Chr04	irgsp1_rep	five_prime_UTR	30695475	30695588	.	-	.	Parent=Os04t0607100-01
Chr04	irgsp1_rep	CDS	30695124	30695474	.	-	0	Parent=Os04t0607100-01
Chr04	irgsp1_rep	CDS	30694673	30694771	.	-	0	Parent=Os04t0607100-01
Chr04	irgsp1_rep	CDS	30694444	30694544	.	-	0	Parent=Os04t0607100-01
Chr04	irgsp1_rep	CDS	30694283	30694358	.	-	1	Parent=Os04t0607100-01
Chr04	irgsp1_rep	three_prime_UTR	30693990	30694282	.	-	.	Parent=Os04t0607100-01
Chr04	irgsp1_rep	three_prime_UTR	30693532	30693612	.	-	.	Parent=Os04t0607100-01
Chr04	irgsp1_rep	three_prime_UTR	30692945	30693007	.	-	.	Parent=Os04t0607100-01
Chr04	irgsp1_rep	three_prime_UTR	30691868	30691990	.	-	.	Parent=Os04t0607100-01
Chr04	irgsp1_rep	three_prime_UTR	30691740	30691778	.	-	.	Parent=Os04t0607100-01
Chr04	irgsp1_rep	three_prime_UTR	30690638	30691130	.	-	.	Parent=Os04t0607100-01
Chr04	irgsp1_rep	mRNA	30697883	30701355	.	-	.	ID=Os04t0607150-00;Name=Os04t0607150-00;Locus_id=Os04g0607150;Note=Similar to OSIGBa0113I13.10 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01KD7 (UniProt);InterPro=TATA element modulatory factor 1 DNA binding (IPR022092);TENOR=Os04t0607150-00;KEGG=Os04t0607150-00
Chr04	irgsp1_rep	CDS	30701199	30701355	.	-	0	Parent=Os04t0607150-00
Chr04	irgsp1_rep	CDS	30700813	30700940	.	-	2	Parent=Os04t0607150-00
Chr04	irgsp1_rep	CDS	30700208	30700276	.	-	0	Parent=Os04t0607150-00
Chr04	irgsp1_rep	CDS	30700014	30700127	.	-	0	Parent=Os04t0607150-00
Chr04	irgsp1_rep	CDS	30699854	30699922	.	-	0	Parent=Os04t0607150-00
Chr04	irgsp1_rep	CDS	30699719	30699775	.	-	0	Parent=Os04t0607150-00
Chr04	irgsp1_rep	CDS	30699484	30699537	.	-	0	Parent=Os04t0607150-00
Chr04	irgsp1_rep	CDS	30699343	30699405	.	-	0	Parent=Os04t0607150-00
Chr04	irgsp1_rep	CDS	30698541	30698696	.	-	0	Parent=Os04t0607150-00
Chr04	irgsp1_rep	CDS	30698380	30698460	.	-	0	Parent=Os04t0607150-00
Chr04	irgsp1_rep	CDS	30698080	30698141	.	-	0	Parent=Os04t0607150-00
Chr04	irgsp1_rep	CDS	30697883	30697970	.	-	1	Parent=Os04t0607150-00
Chr04	irgsp1_rep	mRNA	30703868	30706312	.	+	.	ID=Os04t0607200-01;Name=Os04t0607200-01;Locus_id=Os04g0607200;Note=Hypothetical conserved gene.;Transcript_evidence=AK071573 (DDBJ%2C Best hit);ORF_evidence=B9FCD7 (UniProt);NIAS_FLcDNA=J023103J21;Expression=AK071573;TENOR=Os04t0607200-01;KEGG=Os04t0607200-01
Chr04	irgsp1_rep	five_prime_UTR	30703868	30704106	.	+	.	Parent=Os04t0607200-01
Chr04	irgsp1_rep	CDS	30704107	30704229	.	+	0	Parent=Os04t0607200-01
Chr04	irgsp1_rep	CDS	30705086	30705160	.	+	0	Parent=Os04t0607200-01
Chr04	irgsp1_rep	three_prime_UTR	30705161	30706312	.	+	.	Parent=Os04t0607200-01
Chr04	irgsp1_rep	mRNA	30704219	30707501	.	+	.	ID=Os04t0607200-02;Name=Os04t0607200-02;Locus_id=Os04g0607200;Note=Conserved hypothetical protein.;Transcript_evidence=AK102860 (DDBJ%2C Best hit);ORF_evidence=B9FCD7 (UniProt);NIAS_FLcDNA=J033111F18;TENOR=Os04t0607200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	30704219	30705079	.	+	.	Parent=Os04t0607200-02
Chr04	irgsp1_rep	CDS	30705080	30705160	.	+	0	Parent=Os04t0607200-02
Chr04	irgsp1_rep	three_prime_UTR	30705161	30707501	.	+	.	Parent=Os04t0607200-02
Chr04	irgsp1_rep	mRNA	30704254	30707047	.	+	.	ID=Os04t0607200-03;Name=Os04t0607200-03;Locus_id=Os04g0607200;Note=Conserved hypothetical protein.;Transcript_evidence=AK101302 (DDBJ%2C Best hit);ORF_evidence=B9FCD7 (UniProt);NIAS_FLcDNA=J033033K20;TENOR=Os04t0607200-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	30704254	30705079	.	+	.	Parent=Os04t0607200-03
Chr04	irgsp1_rep	CDS	30705080	30705160	.	+	0	Parent=Os04t0607200-03
Chr04	irgsp1_rep	three_prime_UTR	30705161	30707047	.	+	.	Parent=Os04t0607200-03
Chr04	irgsp1_rep	mRNA	30711791	30712483	.	-	.	ID=Os04t0607250-00;Name=Os04t0607250-00;Locus_id=Os04g0607250;Note=Non-protein coding transcript.;Transcript_evidence=BT060668 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0607250-00
Chr04	irgsp1_rep	exon	30711791	30712483	.	-	.	Parent=Os04t0607250-00
Chr04	irgsp1_rep	mRNA	30716170	30718175	.	+	.	ID=Os04t0607400-01;Name=Os04t0607400-01;Locus_id=Os04g0607400;Note=Conserved hypothetical protein.;Transcript_evidence=AK066668 (DDBJ%2C Best hit),AK063279 (DDBJ%2C Best hit),AK106066 (DDBJ%2C Best hit),AK106108 (DDBJ%2C Best hit);ORF_evidence=B9FCD8 (UniProt);NIAS_FLcDNA=J013073D21,001-113-C08,001-206-G10,001-207-D03;Expression=AK066668;TENOR=Os04t0607400-01;KEGG=Os04t0607400-01
Chr04	irgsp1_rep	five_prime_UTR	30716170	30716186	.	+	.	Parent=Os04t0607400-01
Chr04	irgsp1_rep	CDS	30716187	30717158	.	+	0	Parent=Os04t0607400-01
Chr04	irgsp1_rep	three_prime_UTR	30717159	30718175	.	+	.	Parent=Os04t0607400-01
Chr04	irgsp1_rep	mRNA	30716195	30722227	.	+	.	ID=Os04t0607400-04;Name=Os04t0607400-04;Locus_id=Os04g0607400;Note=Conserved hypothetical protein.;Transcript_evidence=AK109823 (DDBJ%2C Best hit);ORF_evidence=B9FCD8 (UniProt);NIAS_FLcDNA=002-148-A11;Expression=AK109823;TENOR=Os04t0607400-04;KEGG=Os04t0607400-04
Chr04	irgsp1_rep	five_prime_UTR	30716195	30716195	.	+	.	Parent=Os04t0607400-04
Chr04	irgsp1_rep	CDS	30716196	30717158	.	+	0	Parent=Os04t0607400-04
Chr04	irgsp1_rep	three_prime_UTR	30717159	30717273	.	+	.	Parent=Os04t0607400-04
Chr04	irgsp1_rep	three_prime_UTR	30720366	30720403	.	+	.	Parent=Os04t0607400-04
Chr04	irgsp1_rep	three_prime_UTR	30721588	30722227	.	+	.	Parent=Os04t0607400-04
Chr04	irgsp1_rep	mRNA	30723898	30724911	.	+	.	ID=Os04t0607450-01;Name=Os04t0607450-01;Locus_id=Os04g0607450;Note=Non-protein coding transcript.;Transcript_evidence=AK119992 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-184-G08;TENOR=Os04t0607450-01
Chr04	irgsp1_rep	exon	30723898	30724911	.	+	.	Parent=Os04t0607450-01
Chr04	irgsp1_rep	mRNA	30724691	30726976	.	-	.	ID=Os04t0607500-01;Name=Os04t0607500-01;Locus_id=Os04g0607500;RAP-DB Gene Symbol Synonym(s)=HKT4%2C OsHKT4%2C OsHKT1%3B1%2C HKT1%3B1%2C OsHKT2;RAP-DB Gene Name Synonym(s)=HIGH-AFFINITY K+ TRANSPORTER 4%2C High-affinity K+ Transporter 4;CGSNL Gene Symbol=HKT4;CGSNL Gene Name=HIGH-AFFINITY K+ TRANSPORTER 4;Oryzabase Gene Symbol Synonym(s)=OsHKT4%2C OsHKT1%3B1%2C HKT1%3B1%2C OsHKT2%2C RNC4%2C OsHKT1%3B1-FL%2C OsHKT1%3B1-V1%2C OsHKT1%3B1-V2%2C OsHKT1%3B1-V3%2C OsHKT1%3B1-V4%2C OsHKT1%3B1-V5%2C OsHKT1%3B1-V6%2C OsHKT1%3B1-V7%2C OsHKT1%3B1-V8;Oryzabase Gene Name Synonym(s)=High-affinity K+ Transporter 4%2C Root Na+ Content 4;Note=Ion transporter %2C Na+ transport;Transcript_evidence=AJ491816 (DDBJ);ORF_evidence=Q7XPF8 (UniProt);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Molecular Function: cation transmembrane transporter activity (GO:0008324);InterPro=Cation transporter (IPR003445);Manual Curation=August 20%2C 2009;Literature_PMID=12795699,16809061,19482918;Oryzabase=9001;TENOR=Os04t0607500-01
Chr04	irgsp1_rep	five_prime_UTR	30726968	30726976	.	-	.	Parent=Os04t0607500-01
Chr04	irgsp1_rep	CDS	30725709	30726967	.	-	0	Parent=Os04t0607500-01
Chr04	irgsp1_rep	CDS	30725086	30725310	.	-	1	Parent=Os04t0607500-01
Chr04	irgsp1_rep	CDS	30724692	30724866	.	-	1	Parent=Os04t0607500-01
Chr04	irgsp1_rep	three_prime_UTR	30724691	30724691	.	-	.	Parent=Os04t0607500-01
Chr04	irgsp1_rep	mRNA	30724493	30727084	.	-	.	ID=Os04t0607500-02;Name=Os04t0607500-02;Locus_id=Os04g0607500;CGSNL Gene Symbol=HKT4;CGSNL Gene Name=HIGH-AFFINITY K+ TRANSPORTER 4;Oryzabase Gene Symbol Synonym(s)=OsHKT4%2C OsHKT1%3B1%2C HKT1%3B1%2C OsHKT2%2C RNC4%2C OsHKT1%3B1-FL%2C OsHKT1%3B1-V1%2C OsHKT1%3B1-V2%2C OsHKT1%3B1-V3%2C OsHKT1%3B1-V4%2C OsHKT1%3B1-V5%2C OsHKT1%3B1-V6%2C OsHKT1%3B1-V7%2C OsHKT1%3B1-V8;Oryzabase Gene Name Synonym(s)=High-affinity K+ Transporter 4%2C Root Na+ Content 4;Note=Similar to Cation transporter HKT4.;Transcript_evidence=AK287508 (DDBJ%2C Best hit);ORF_evidence=Q7XPF8 (UniProt);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Molecular Function: cation transmembrane transporter activity (GO:0008324);InterPro=Cation transporter (IPR003445);NIAS_FLcDNA=J043037I06;Oryzabase=9001;TENOR=Os04t0607500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	30726968	30727084	.	-	.	Parent=Os04t0607500-02
Chr04	irgsp1_rep	CDS	30725709	30726967	.	-	0	Parent=Os04t0607500-02
Chr04	irgsp1_rep	CDS	30724998	30725310	.	-	1	Parent=Os04t0607500-02
Chr04	irgsp1_rep	three_prime_UTR	30724493	30724997	.	-	.	Parent=Os04t0607500-02
Chr04	irgsp1_rep	mRNA	30730362	30735354	.	+	.	ID=Os04t0607566-00;Name=Os04t0607566-00;Locus_id=Os04g0607566;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os04t0607566-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	30730362	30730626	.	+	0	Parent=Os04t0607566-00
Chr04	irgsp1_rep	CDS	30732901	30733207	.	+	2	Parent=Os04t0607566-00
Chr04	irgsp1_rep	CDS	30735276	30735354	.	+	1	Parent=Os04t0607566-00
Chr04	irgsp1_rep	mRNA	30731003	30733533	.	-	.	ID=Os04t0607583-00;Name=Os04t0607583-00;Locus_id=Os04g0607583;Note=Similar to OSIGBa0113I13.12 protein.;Transcript_evidence=AK249167 (DDBJ);ORF_evidence=F2YTL6 (UniProt);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Molecular Function: cation transmembrane transporter activity (GO:0008324);InterPro=Cation transporter (IPR003445);TENOR=Os04t0607583-00;KEGG=Os04t0607583-00;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	30733442	30733533	.	-	.	Parent=Os04t0607583-00
Chr04	irgsp1_rep	CDS	30732566	30733441	.	-	0	Parent=Os04t0607583-00
Chr04	irgsp1_rep	three_prime_UTR	30732226	30732565	.	-	.	Parent=Os04t0607583-00
Chr04	irgsp1_rep	three_prime_UTR	30731408	30731686	.	-	.	Parent=Os04t0607583-00
Chr04	irgsp1_rep	three_prime_UTR	30731003	30731197	.	-	.	Parent=Os04t0607583-00
Chr04	irgsp1_rep	mRNA	30734729	30739334	.	-	.	ID=Os04t0607600-01;Name=Os04t0607600-01;Locus_id=Os04g0607600;RAP-DB Gene Symbol Synonym(s)=HKT7%2C OsHKT7%2C OsHKT1%3B4;RAP-DB Gene Name Synonym(s)=HIGH-AFFINITY K+ TRANSPORTER 7%2C Oryza sativa High-affinity K+ Transporter 7%2C Probable cation transporter HKT7;CGSNL Gene Symbol=HKT7;CGSNL Gene Name=HIGH-AFFINITY K+ TRANSPORTER 7;Oryzabase Gene Symbol Synonym(s)=OsHKT7%2C OsHKT1%3B4%2C HKT1%3B4;Oryzabase Gene Name Synonym(s)=Oryza sativa High-affinity K+ Transporter 7%2C Probable cation transporter HKT7;Note=High-affinity K+ transporter (HKT) family protein%2C Na+ exclusion from leaf blade upon salt stress;Transcript_evidence=AK109852,AK120889,AJ491853;ORF_evidence=Q7XPF7;GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Molecular Function: cation transmembrane transporter activity (GO:0008324);InterPro=Cation transporter (IPR003445);NIAS_FLcDNA=002-148-F09, J023029F13;Manual Curation=January 28%2C 2016;Literature_PMID=26786707,12795699;Oryzabase=7423;Expression=AK109852;TENOR=Os04t0607600-01;KEGG=Os04t0607600-01
Chr04	irgsp1_rep	five_prime_UTR	30739251	30739334	.	-	.	Parent=Os04t0607600-01
Chr04	irgsp1_rep	CDS	30738169	30739250	.	-	0	Parent=Os04t0607600-01
Chr04	irgsp1_rep	CDS	30735250	30735471	.	-	1	Parent=Os04t0607600-01
Chr04	irgsp1_rep	CDS	30734865	30735063	.	-	1	Parent=Os04t0607600-01
Chr04	irgsp1_rep	three_prime_UTR	30734729	30734864	.	-	.	Parent=Os04t0607600-01
Chr04	irgsp1_rep	mRNA	30764550	30770580	.	-	.	ID=Os04t0608100-01;Name=Os04t0608100-01;Locus_id=Os04g0608100;Oryzabase Gene Symbol Synonym(s)=GalK2;Note=Ribosomal protein S5 domain 2-type fold domain containing protein.;Transcript_evidence=AK072315 (DDBJ%2C Best hit);ORF_evidence=Q01KD2 (UniProt);GO=Biological Process: galactose metabolic process (GO:0006012),Biological Process: metabolic process (GO:0008152),Biological Process: carbohydrate phosphorylation (GO:0046835),Cellular Component: cytoplasm (GO:0005737),Molecular Function: galactokinase activity (GO:0004335),Molecular Function: ATP binding (GO:0005524),Molecular Function: kinase activity (GO:0016301),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Galactokinase (IPR000705),Mevalonate/galactokinase (IPR006206),GHMP kinase%2C C-terminal (IPR013750),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=J023021M07;Oryzabase=13326;Expression=AK072315;TENOR=Os04t0608100-01;KEGG=Os04t0608100-01 (EC:2.7.1.6)
Chr04	irgsp1_rep	five_prime_UTR	30770494	30770580	.	-	.	Parent=Os04t0608100-01
Chr04	irgsp1_rep	CDS	30770437	30770493	.	-	0	Parent=Os04t0608100-01
Chr04	irgsp1_rep	CDS	30769293	30769406	.	-	0	Parent=Os04t0608100-01
Chr04	irgsp1_rep	CDS	30768266	30768337	.	-	0	Parent=Os04t0608100-01
Chr04	irgsp1_rep	CDS	30767957	30768000	.	-	0	Parent=Os04t0608100-01
Chr04	irgsp1_rep	CDS	30767584	30767692	.	-	1	Parent=Os04t0608100-01
Chr04	irgsp1_rep	CDS	30767442	30767507	.	-	0	Parent=Os04t0608100-01
Chr04	irgsp1_rep	CDS	30767017	30767096	.	-	0	Parent=Os04t0608100-01
Chr04	irgsp1_rep	CDS	30766693	30766792	.	-	1	Parent=Os04t0608100-01
Chr04	irgsp1_rep	CDS	30766222	30766397	.	-	0	Parent=Os04t0608100-01
Chr04	irgsp1_rep	CDS	30766037	30766077	.	-	1	Parent=Os04t0608100-01
Chr04	irgsp1_rep	CDS	30765928	30765956	.	-	2	Parent=Os04t0608100-01
Chr04	irgsp1_rep	CDS	30765768	30765837	.	-	0	Parent=Os04t0608100-01
Chr04	irgsp1_rep	CDS	30765222	30765311	.	-	2	Parent=Os04t0608100-01
Chr04	irgsp1_rep	CDS	30764896	30765140	.	-	2	Parent=Os04t0608100-01
Chr04	irgsp1_rep	three_prime_UTR	30764550	30764895	.	-	.	Parent=Os04t0608100-01
Chr04	irgsp1_rep	mRNA	30764576	30767956	.	-	.	ID=Os04t0608100-02;Name=Os04t0608100-02;Locus_id=Os04g0608100;Oryzabase Gene Symbol Synonym(s)=GalK2;Note=Similar to OSIGBa0113I13.15 protein.;Transcript_evidence=AK100290 (DDBJ%2C Best hit);ORF_evidence=Q01KD2 (UniProt);InterPro=Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721);NIAS_FLcDNA=J023075K06;Oryzabase=13326;Expression=AK100290;TENOR=Os04t0608100-02;KEGG=Os04t0608100-02 (EC:2.7.1.6)
Chr04	irgsp1_rep	five_prime_UTR	30767728	30767956	.	-	.	Parent=Os04t0608100-02
Chr04	irgsp1_rep	CDS	30767584	30767727	.	-	0	Parent=Os04t0608100-02
Chr04	irgsp1_rep	CDS	30767433	30767507	.	-	0	Parent=Os04t0608100-02
Chr04	irgsp1_rep	three_prime_UTR	30765768	30767432	.	-	.	Parent=Os04t0608100-02
Chr04	irgsp1_rep	three_prime_UTR	30765222	30765311	.	-	.	Parent=Os04t0608100-02
Chr04	irgsp1_rep	three_prime_UTR	30764576	30765140	.	-	.	Parent=Os04t0608100-02
Chr04	irgsp1_rep	mRNA	30783768	30784121	.	-	.	ID=Os04t0608201-00;Name=Os04t0608201-00;Locus_id=Os04g0608201;Note=Hypothetical gene.;Transcript_evidence=EU949962 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0608201-00;KEGG=Os04t0608201-00
Chr04	irgsp1_rep	CDS	30783984	30784121	.	-	0	Parent=Os04t0608201-00
Chr04	irgsp1_rep	CDS	30783768	30783914	.	-	0	Parent=Os04t0608201-00
Chr04	irgsp1_rep	mRNA	30783636	30784530	.	+	.	ID=Os04t0608300-01;Name=Os04t0608300-01;Locus_id=Os04g0608300;CGSNL Gene Symbol=SAUR20;CGSNL Gene Name=SMALL AUXIN-UP RNA 20;Oryzabase Gene Symbol Synonym(s)=OsSAUR20;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 20;Note=Auxin responsive SAUR protein domain containing protein.;Transcript_evidence=AK111353 (DDBJ%2C Best hit);ORF_evidence=NP_001150569.1 (RefSeq);InterPro=Auxin responsive SAUR protein (IPR003676);NIAS_FLcDNA=002-181-G09;Oryzabase=9145;Expression=AK111353;TENOR=Os04t0608300-01;KEGG=Os04t0608300-01
Chr04	irgsp1_rep	five_prime_UTR	30783636	30783734	.	+	.	Parent=Os04t0608300-01
Chr04	irgsp1_rep	CDS	30783735	30784265	.	+	0	Parent=Os04t0608300-01
Chr04	irgsp1_rep	three_prime_UTR	30784266	30784530	.	+	.	Parent=Os04t0608300-01
Chr04	irgsp1_rep	mRNA	30791749	30798176	.	+	.	ID=Os04t0608400-01;Name=Os04t0608400-01;Locus_id=Os04g0608400;Note=Nuclear pore complex%2C nucleoporin 88 domain containing protein.;Transcript_evidence=AK121814 (DDBJ%2C Best hit);ORF_evidence=Q7XPF0 (UniProt);InterPro=Nuclear pore complex%2C nucleoporin 88 (IPR019321);NIAS_FLcDNA=J033098G21;TENOR=Os04t0608400-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	30791749	30792261	.	+	0	Parent=Os04t0608400-01
Chr04	irgsp1_rep	CDS	30792550	30792701	.	+	0	Parent=Os04t0608400-01
Chr04	irgsp1_rep	CDS	30793019	30793141	.	+	1	Parent=Os04t0608400-01
Chr04	irgsp1_rep	CDS	30793333	30793477	.	+	1	Parent=Os04t0608400-01
Chr04	irgsp1_rep	CDS	30794125	30794186	.	+	0	Parent=Os04t0608400-01
Chr04	irgsp1_rep	CDS	30794466	30794679	.	+	1	Parent=Os04t0608400-01
Chr04	irgsp1_rep	CDS	30795764	30796678	.	+	0	Parent=Os04t0608400-01
Chr04	irgsp1_rep	CDS	30796920	30797169	.	+	0	Parent=Os04t0608400-01
Chr04	irgsp1_rep	CDS	30797257	30797525	.	+	2	Parent=Os04t0608400-01
Chr04	irgsp1_rep	three_prime_UTR	30797604	30798176	.	+	.	Parent=Os04t0608400-01
Chr04	irgsp1_rep	mRNA	30792070	30798121	.	+	.	ID=Os04t0608400-02;Name=Os04t0608400-02;Locus_id=Os04g0608400;Note=Nuclear pore complex%2C nucleoporin 88 domain containing protein.;Transcript_evidence=AK065931 (DDBJ%2C Best hit);ORF_evidence=Q7XPF0 (UniProt);InterPro=Nuclear pore complex%2C nucleoporin 88 (IPR019321);NIAS_FLcDNA=J013044J17;TENOR=Os04t0608400-02;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	30792070	30792261	.	+	0	Parent=Os04t0608400-02
Chr04	irgsp1_rep	CDS	30792550	30792701	.	+	0	Parent=Os04t0608400-02
Chr04	irgsp1_rep	CDS	30793019	30793141	.	+	1	Parent=Os04t0608400-02
Chr04	irgsp1_rep	CDS	30793333	30793477	.	+	1	Parent=Os04t0608400-02
Chr04	irgsp1_rep	CDS	30794125	30794186	.	+	0	Parent=Os04t0608400-02
Chr04	irgsp1_rep	CDS	30794466	30794679	.	+	1	Parent=Os04t0608400-02
Chr04	irgsp1_rep	CDS	30795764	30796678	.	+	0	Parent=Os04t0608400-02
Chr04	irgsp1_rep	CDS	30796920	30797169	.	+	0	Parent=Os04t0608400-02
Chr04	irgsp1_rep	CDS	30797257	30797525	.	+	2	Parent=Os04t0608400-02
Chr04	irgsp1_rep	three_prime_UTR	30797604	30798121	.	+	.	Parent=Os04t0608400-02
Chr04	irgsp1_rep	mRNA	30792147	30798083	.	+	.	ID=Os04t0608400-03;Name=Os04t0608400-03;Locus_id=Os04g0608400;Note=Nuclear pore complex%2C nucleoporin 88 domain containing protein.;Transcript_evidence=AK099996 (DDBJ%2C Best hit);ORF_evidence=Q7XPF0 (UniProt);InterPro=Nuclear pore complex%2C nucleoporin 88 (IPR019321);NIAS_FLcDNA=J013132K14;TENOR=Os04t0608400-03;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	30792147	30792147	.	+	.	Parent=Os04t0608400-03
Chr04	irgsp1_rep	CDS	30792148	30792261	.	+	0	Parent=Os04t0608400-03
Chr04	irgsp1_rep	CDS	30792550	30792701	.	+	0	Parent=Os04t0608400-03
Chr04	irgsp1_rep	CDS	30793019	30793141	.	+	1	Parent=Os04t0608400-03
Chr04	irgsp1_rep	CDS	30793333	30793477	.	+	1	Parent=Os04t0608400-03
Chr04	irgsp1_rep	CDS	30794125	30794186	.	+	0	Parent=Os04t0608400-03
Chr04	irgsp1_rep	CDS	30794466	30794679	.	+	1	Parent=Os04t0608400-03
Chr04	irgsp1_rep	CDS	30795764	30796678	.	+	0	Parent=Os04t0608400-03
Chr04	irgsp1_rep	CDS	30796920	30797169	.	+	0	Parent=Os04t0608400-03
Chr04	irgsp1_rep	CDS	30797257	30797525	.	+	2	Parent=Os04t0608400-03
Chr04	irgsp1_rep	three_prime_UTR	30797604	30798083	.	+	.	Parent=Os04t0608400-03
Chr04	irgsp1_rep	mRNA	30791807	30797582	.	-	.	ID=Os04t0608450-00;Name=Os04t0608450-00;Locus_id=Os04g0608450;Note=Hypothetical protein.;Transcript_evidence=tplb0042a12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0608450-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	30797255	30797582	.	-	.	Parent=Os04t0608450-00
Chr04	irgsp1_rep	five_prime_UTR	30796918	30797167	.	-	.	Parent=Os04t0608450-00
Chr04	irgsp1_rep	five_prime_UTR	30795755	30796676	.	-	.	Parent=Os04t0608450-00
Chr04	irgsp1_rep	five_prime_UTR	30794441	30794671	.	-	.	Parent=Os04t0608450-00
Chr04	irgsp1_rep	five_prime_UTR	30793330	30793501	.	-	.	Parent=Os04t0608450-00
Chr04	irgsp1_rep	five_prime_UTR	30793016	30793138	.	-	.	Parent=Os04t0608450-00
Chr04	irgsp1_rep	five_prime_UTR	30792592	30792698	.	-	.	Parent=Os04t0608450-00
Chr04	irgsp1_rep	CDS	30792548	30792591	.	-	0	Parent=Os04t0608450-00
Chr04	irgsp1_rep	CDS	30792061	30792259	.	-	1	Parent=Os04t0608450-00
Chr04	irgsp1_rep	three_prime_UTR	30791807	30792060	.	-	.	Parent=Os04t0608450-00
Chr04	irgsp1_rep	mRNA	30798891	30802515	.	-	.	ID=Os04t0608500-01;Name=Os04t0608500-01;Locus_id=Os04g0608500;CGSNL Gene Symbol=RPN2B;CGSNL Gene Name=19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 2B;Oryzabase Gene Symbol Synonym(s)=OsRpn2b%2C Rpn2b;Oryzabase Gene Name Synonym(s)=19S regulatory particle non-ATPase subunit 2b%2C RP non-ATPase 2b;Note=Similar to 26S proteasome subunit RPN2a.;Transcript_evidence=AK099648 (DDBJ%2C Best hit);ORF_evidence=Q6XJG7 (UniProt);InterPro=Proteasome/cyclosome%2C regulatory subunit (IPR002015);NIAS_FLcDNA=J013065A21;Oryzabase=20563;TENOR=Os04t0608500-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	30802514	30802515	.	-	.	Parent=Os04t0608500-01
Chr04	irgsp1_rep	CDS	30802379	30802513	.	-	0	Parent=Os04t0608500-01
Chr04	irgsp1_rep	CDS	30801956	30802299	.	-	0	Parent=Os04t0608500-01
Chr04	irgsp1_rep	CDS	30801552	30801687	.	-	1	Parent=Os04t0608500-01
Chr04	irgsp1_rep	CDS	30801219	30801467	.	-	0	Parent=Os04t0608500-01
Chr04	irgsp1_rep	CDS	30801074	30801133	.	-	0	Parent=Os04t0608500-01
Chr04	irgsp1_rep	CDS	30800958	30800960	.	-	0	Parent=Os04t0608500-01
Chr04	irgsp1_rep	three_prime_UTR	30800913	30800957	.	-	.	Parent=Os04t0608500-01
Chr04	irgsp1_rep	three_prime_UTR	30800576	30800834	.	-	.	Parent=Os04t0608500-01
Chr04	irgsp1_rep	three_prime_UTR	30799622	30800365	.	-	.	Parent=Os04t0608500-01
Chr04	irgsp1_rep	three_prime_UTR	30798891	30799408	.	-	.	Parent=Os04t0608500-01
Chr04	irgsp1_rep	mRNA	30806290	30808461	.	-	.	ID=Os04t0608600-01;Name=Os04t0608600-01;Locus_id=Os04g0608600;Note=Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant domain containing protein.;Transcript_evidence=AK067687 (DDBJ%2C Best hit);ORF_evidence=B9FCE3 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: antioxidant activity (GO:0016209),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant (IPR000866),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=J013119B03;TENOR=Os04t0608600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	30808036	30808461	.	-	.	Parent=Os04t0608600-01
Chr04	irgsp1_rep	CDS	30807436	30808035	.	-	0	Parent=Os04t0608600-01
Chr04	irgsp1_rep	three_prime_UTR	30806290	30807435	.	-	.	Parent=Os04t0608600-01
Chr04	irgsp1_rep	mRNA	30821134	30825426	.	+	.	ID=Os04t0608800-01;Name=Os04t0608800-01;Locus_id=Os04g0608800;Note=YT521-B-like protein family protein.;Transcript_evidence=AK065298 (DDBJ%2C Best hit);ORF_evidence=Q25AJ0 (UniProt);InterPro=YTH domain (IPR007275);NIAS_FLcDNA=J013002N16;TENOR=Os04t0608800-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	30821134	30821280	.	+	.	Parent=Os04t0608800-01
Chr04	irgsp1_rep	CDS	30821281	30821314	.	+	0	Parent=Os04t0608800-01
Chr04	irgsp1_rep	CDS	30822224	30822279	.	+	2	Parent=Os04t0608800-01
Chr04	irgsp1_rep	CDS	30822382	30822556	.	+	0	Parent=Os04t0608800-01
Chr04	irgsp1_rep	CDS	30822931	30823007	.	+	2	Parent=Os04t0608800-01
Chr04	irgsp1_rep	CDS	30823131	30823368	.	+	0	Parent=Os04t0608800-01
Chr04	irgsp1_rep	CDS	30823503	30823567	.	+	2	Parent=Os04t0608800-01
Chr04	irgsp1_rep	CDS	30823717	30824175	.	+	0	Parent=Os04t0608800-01
Chr04	irgsp1_rep	CDS	30824342	30824554	.	+	0	Parent=Os04t0608800-01
Chr04	irgsp1_rep	CDS	30824702	30825091	.	+	0	Parent=Os04t0608800-01
Chr04	irgsp1_rep	three_prime_UTR	30825092	30825426	.	+	.	Parent=Os04t0608800-01
Chr04	irgsp1_rep	mRNA	30824023	30825440	.	+	.	ID=Os04t0608800-02;Name=Os04t0608800-02;Locus_id=Os04g0608800;Note=Similar to H0702G05.3 protein.;Transcript_evidence=AK062217 (DDBJ%2C Best hit);ORF_evidence=Q25AJ0 (UniProt);InterPro=YTH domain (IPR007275);NIAS_FLcDNA=001-047-B01;TENOR=Os04t0608800-02;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	30824023	30824175	.	+	0	Parent=Os04t0608800-02
Chr04	irgsp1_rep	CDS	30824342	30824554	.	+	0	Parent=Os04t0608800-02
Chr04	irgsp1_rep	CDS	30824702	30825091	.	+	0	Parent=Os04t0608800-02
Chr04	irgsp1_rep	three_prime_UTR	30825092	30825440	.	+	.	Parent=Os04t0608800-02
Chr04	irgsp1_rep	mRNA	30824029	30824837	.	-	.	ID=Os04t0608850-00;Name=Os04t0608850-00;Locus_id=Os04g0608850;Note=Non-protein coding transcript.;Transcript_evidence=BT016473 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0608850-00
Chr04	irgsp1_rep	exon	30824670	30824837	.	-	.	Parent=Os04t0608850-00
Chr04	irgsp1_rep	exon	30824331	30824525	.	-	.	Parent=Os04t0608850-00
Chr04	irgsp1_rep	exon	30824029	30824162	.	-	.	Parent=Os04t0608850-00
Chr04	irgsp1_rep	mRNA	30825563	30829578	.	-	.	ID=Os04t0608900-01;Name=Os04t0608900-01;Locus_id=Os04g0608900;Oryzabase Gene Symbol Synonym(s)=OsDPK4;Oryzabase Gene Name Synonym(s)=dual-specificity protein kinase 4;Note=Similar to Serine/thronine protein kinase-like protein.;Transcript_evidence=AK111698 (DDBJ%2C Best hit);ORF_evidence=Q25AI9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023004I16;Oryzabase=14415;TENOR=Os04t0608900-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	30829419	30829578	.	-	.	Parent=Os04t0608900-01
Chr04	irgsp1_rep	five_prime_UTR	30829146	30829285	.	-	.	Parent=Os04t0608900-01
Chr04	irgsp1_rep	CDS	30828217	30829145	.	-	0	Parent=Os04t0608900-01
Chr04	irgsp1_rep	CDS	30826050	30826389	.	-	1	Parent=Os04t0608900-01
Chr04	irgsp1_rep	three_prime_UTR	30825563	30826049	.	-	.	Parent=Os04t0608900-01
Chr04	irgsp1_rep	mRNA	30826050	30829146	.	+	.	ID=Os04t0609000-00;Name=Os04t0609000-00;Locus_id=Os04g0609000;Note=Hypothetical protein.;Transcript_evidence=tplb0062i19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0609000-00
Chr04	irgsp1_rep	five_prime_UTR	30826050	30826373	.	+	.	Parent=Os04t0609000-00
Chr04	irgsp1_rep	five_prime_UTR	30828199	30828824	.	+	.	Parent=Os04t0609000-00
Chr04	irgsp1_rep	CDS	30828825	30829146	.	+	0	Parent=Os04t0609000-00
Chr04	irgsp1_rep	mRNA	30844105	30846336	.	+	.	ID=Os04t0609100-01;Name=Os04t0609100-01;Locus_id=Os04g0609100;Note=Similar to H0702G05.5 protein.;Transcript_evidence=AK063294 (DDBJ%2C Best hit);ORF_evidence=Q25AI8 (UniProt);NIAS_FLcDNA=001-113-E08;TENOR=Os04t0609100-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	30844105	30844105	.	+	.	Parent=Os04t0609100-01
Chr04	irgsp1_rep	CDS	30844106	30845776	.	+	0	Parent=Os04t0609100-01
Chr04	irgsp1_rep	three_prime_UTR	30845777	30845789	.	+	.	Parent=Os04t0609100-01
Chr04	irgsp1_rep	three_prime_UTR	30846035	30846336	.	+	.	Parent=Os04t0609100-01
Chr04	irgsp1_rep	mRNA	30852341	30856049	.	-	.	ID=Os04t0609200-01;Name=Os04t0609200-01;Locus_id=Os04g0609200;Note=Major facilitator superfamily protein.;Transcript_evidence=AK103652 (DDBJ%2C Best hit);ORF_evidence=Q25AI7 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transmembrane transporter activity (GO:0022857);InterPro=General substrate transporter (IPR005828),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J033135D24;Expression=AK103652;TENOR=Os04t0609200-01;KEGG=Os04t0609200-01
Chr04	irgsp1_rep	five_prime_UTR	30855680	30856049	.	-	.	Parent=Os04t0609200-01
Chr04	irgsp1_rep	CDS	30854870	30855145	.	-	0	Parent=Os04t0609200-01
Chr04	irgsp1_rep	CDS	30854042	30854074	.	-	0	Parent=Os04t0609200-01
Chr04	irgsp1_rep	three_prime_UTR	30853837	30854041	.	-	.	Parent=Os04t0609200-01
Chr04	irgsp1_rep	three_prime_UTR	30853116	30853641	.	-	.	Parent=Os04t0609200-01
Chr04	irgsp1_rep	three_prime_UTR	30852825	30853027	.	-	.	Parent=Os04t0609200-01
Chr04	irgsp1_rep	three_prime_UTR	30852341	30852677	.	-	.	Parent=Os04t0609200-01
Chr04	irgsp1_rep	mRNA	30860607	30863363	.	+	.	ID=Os04t0609300-01;Name=Os04t0609300-01;Locus_id=Os04g0609300;Note=Transferase family protein.;Transcript_evidence=AK287645 (DDBJ%2C Best hit);ORF_evidence=Q25AI6 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J065090D09;TENOR=Os04t0609300-01;KEGG=Os04t0609300-01
Chr04	irgsp1_rep	five_prime_UTR	30860607	30860660	.	+	.	Parent=Os04t0609300-01
Chr04	irgsp1_rep	CDS	30860661	30861098	.	+	0	Parent=Os04t0609300-01
Chr04	irgsp1_rep	CDS	30862168	30863130	.	+	0	Parent=Os04t0609300-01
Chr04	irgsp1_rep	three_prime_UTR	30863131	30863363	.	+	.	Parent=Os04t0609300-01
Chr04	irgsp1_rep	mRNA	30860633	30863114	.	-	.	ID=Os04t0609400-00;Name=Os04t0609400-00;Locus_id=Os04g0609400;Note=Hypothetical protein.;Transcript_evidence=tplb0061c05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0609400-00
Chr04	irgsp1_rep	five_prime_UTR	30862644	30863114	.	-	.	Parent=Os04t0609400-00
Chr04	irgsp1_rep	CDS	30862233	30862643	.	-	0	Parent=Os04t0609400-00
Chr04	irgsp1_rep	three_prime_UTR	30862163	30862232	.	-	.	Parent=Os04t0609400-00
Chr04	irgsp1_rep	three_prime_UTR	30860633	30861093	.	-	.	Parent=Os04t0609400-00
Chr04	irgsp1_rep	mRNA	30869610	30871743	.	+	.	ID=Os04t0609500-00;Name=Os04t0609500-00;Locus_id=Os04g0609500;Oryzabase Gene Name Synonym(s)=Transferase family protein;Note=Transferase family protein.;Transcript_evidence=EU968211 (DDBJ);ORF_evidence=Q25AI5 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);Oryzabase=23612;TENOR=Os04t0609500-00;KEGG=Os04t0609500-00
Chr04	irgsp1_rep	five_prime_UTR	30869610	30869665	.	+	.	Parent=Os04t0609500-00
Chr04	irgsp1_rep	CDS	30869666	30870076	.	+	0	Parent=Os04t0609500-00
Chr04	irgsp1_rep	CDS	30870781	30871743	.	+	0	Parent=Os04t0609500-00
Chr04	irgsp1_rep	mRNA	30869621	30871743	.	-	.	ID=Os04t0609525-00;Name=Os04t0609525-00;Locus_id=Os04g0609525;Note=Hypothetical protein.;Transcript_evidence=tplb0061c05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0609525-00
Chr04	irgsp1_rep	CDS	30870985	30871743	.	-	0	Parent=Os04t0609525-00
Chr04	irgsp1_rep	three_prime_UTR	30870764	30870984	.	-	.	Parent=Os04t0609525-00
Chr04	irgsp1_rep	three_prime_UTR	30869621	30870056	.	-	.	Parent=Os04t0609525-00
Chr04	irgsp1_rep	mRNA	30875221	30879479	.	-	.	ID=Os04t0609600-01;Name=Os04t0609600-01;Locus_id=Os04g0609600;Oryzabase Gene Symbol Synonym(s)=OsPP2C44%2C PP2C44%2C OsPP69;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C44%2C protein phosphatase 2C 44%2C protein phosphatase 69;Note=Similar to Protein phosphatase type 2C.;Transcript_evidence=AK070129 (DDBJ%2C Best hit);ORF_evidence=Q25AI4 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J023047A13;Oryzabase=17918;Expression=AK070129;TENOR=Os04t0609600-01;KEGG=Os04t0609600-01 (EC:3.1.3.16)
Chr04	irgsp1_rep	five_prime_UTR	30879219	30879479	.	-	.	Parent=Os04t0609600-01
Chr04	irgsp1_rep	CDS	30879084	30879218	.	-	0	Parent=Os04t0609600-01
Chr04	irgsp1_rep	CDS	30876706	30876957	.	-	0	Parent=Os04t0609600-01
Chr04	irgsp1_rep	CDS	30876294	30876576	.	-	0	Parent=Os04t0609600-01
Chr04	irgsp1_rep	CDS	30876042	30876196	.	-	2	Parent=Os04t0609600-01
Chr04	irgsp1_rep	CDS	30875578	30875718	.	-	0	Parent=Os04t0609600-01
Chr04	irgsp1_rep	three_prime_UTR	30875221	30875577	.	-	.	Parent=Os04t0609600-01
Chr04	irgsp1_rep	mRNA	30888156	30903920	.	-	.	ID=Os04t0609700-01;Name=Os04t0609700-01;Locus_id=Os04g0609700;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK101763 (DDBJ%2C Best hit);ORF_evidence=Q25AI3 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-type%2C conserved site (IPR019786),Zinc finger%2C PHD-finger (IPR019787);NIAS_FLcDNA=J033064C18;Expression=AK101763;TENOR=Os04t0609700-01;KEGG=Os04t0609700-01
Chr04	irgsp1_rep	five_prime_UTR	30903919	30903920	.	-	.	Parent=Os04t0609700-01
Chr04	irgsp1_rep	CDS	30903872	30903918	.	-	0	Parent=Os04t0609700-01
Chr04	irgsp1_rep	CDS	30903570	30903651	.	-	1	Parent=Os04t0609700-01
Chr04	irgsp1_rep	CDS	30903211	30903333	.	-	0	Parent=Os04t0609700-01
Chr04	irgsp1_rep	CDS	30902852	30902995	.	-	0	Parent=Os04t0609700-01
Chr04	irgsp1_rep	CDS	30902640	30902742	.	-	0	Parent=Os04t0609700-01
Chr04	irgsp1_rep	CDS	30902154	30902282	.	-	2	Parent=Os04t0609700-01
Chr04	irgsp1_rep	CDS	30899837	30899907	.	-	2	Parent=Os04t0609700-01
Chr04	irgsp1_rep	CDS	30899220	30899389	.	-	0	Parent=Os04t0609700-01
Chr04	irgsp1_rep	CDS	30899042	30899135	.	-	1	Parent=Os04t0609700-01
Chr04	irgsp1_rep	CDS	30898177	30898274	.	-	0	Parent=Os04t0609700-01
Chr04	irgsp1_rep	CDS	30897962	30898097	.	-	1	Parent=Os04t0609700-01
Chr04	irgsp1_rep	CDS	30897763	30897869	.	-	0	Parent=Os04t0609700-01
Chr04	irgsp1_rep	CDS	30897072	30897167	.	-	1	Parent=Os04t0609700-01
Chr04	irgsp1_rep	CDS	30896911	30896998	.	-	1	Parent=Os04t0609700-01
Chr04	irgsp1_rep	CDS	30896706	30896823	.	-	0	Parent=Os04t0609700-01
Chr04	irgsp1_rep	CDS	30896504	30896615	.	-	2	Parent=Os04t0609700-01
Chr04	irgsp1_rep	CDS	30896311	30896434	.	-	1	Parent=Os04t0609700-01
Chr04	irgsp1_rep	CDS	30896151	30896228	.	-	0	Parent=Os04t0609700-01
Chr04	irgsp1_rep	CDS	30895891	30896009	.	-	0	Parent=Os04t0609700-01
Chr04	irgsp1_rep	CDS	30895375	30895428	.	-	1	Parent=Os04t0609700-01
Chr04	irgsp1_rep	CDS	30895096	30895198	.	-	1	Parent=Os04t0609700-01
Chr04	irgsp1_rep	CDS	30889833	30889961	.	-	0	Parent=Os04t0609700-01
Chr04	irgsp1_rep	CDS	30889012	30889123	.	-	0	Parent=Os04t0609700-01
Chr04	irgsp1_rep	CDS	30888561	30888592	.	-	2	Parent=Os04t0609700-01
Chr04	irgsp1_rep	three_prime_UTR	30888156	30888560	.	-	.	Parent=Os04t0609700-01
Chr04	irgsp1_rep	mRNA	30888193	30889128	.	-	.	ID=Os04t0609700-02;Name=Os04t0609700-02;Locus_id=Os04g0609700;Note=Similar to H0702G05.10 protein.;Transcript_evidence=AK058541 (DDBJ%2C Best hit);ORF_evidence=Q25AI3 (UniProt);NIAS_FLcDNA=001-017-B08;Expression=AK058541;TENOR=Os04t0609700-02;KEGG=Os04t0609700-02
Chr04	irgsp1_rep	five_prime_UTR	30889127	30889128	.	-	.	Parent=Os04t0609700-02
Chr04	irgsp1_rep	CDS	30889012	30889126	.	-	0	Parent=Os04t0609700-02
Chr04	irgsp1_rep	CDS	30888561	30888592	.	-	2	Parent=Os04t0609700-02
Chr04	irgsp1_rep	three_prime_UTR	30888193	30888560	.	-	.	Parent=Os04t0609700-02
Chr04	irgsp1_rep	mRNA	30909002	30913654	.	-	.	ID=Os04t0609900-00;Name=Os04t0609900-00;Locus_id=Os04g0609900;Note=Similar to H0702G05.11 protein.;Transcript_evidence=AK330666 (DDBJ);ORF_evidence=Q25AI2 (UniProt);InterPro=Transposase%2C Ptta/En/Spm%2C plant (IPR004252);TENOR=Os04t0609900-00;KEGG=Os04t0609900-00
Chr04	irgsp1_rep	five_prime_UTR	30913654	30913654	.	-	.	Parent=Os04t0609900-00
Chr04	irgsp1_rep	CDS	30913204	30913653	.	-	0	Parent=Os04t0609900-00
Chr04	irgsp1_rep	CDS	30911191	30913027	.	-	0	Parent=Os04t0609900-00
Chr04	irgsp1_rep	CDS	30910246	30910439	.	-	2	Parent=Os04t0609900-00
Chr04	irgsp1_rep	CDS	30909960	30910163	.	-	0	Parent=Os04t0609900-00
Chr04	irgsp1_rep	CDS	30909761	30909853	.	-	0	Parent=Os04t0609900-00
Chr04	irgsp1_rep	CDS	30909558	30909653	.	-	0	Parent=Os04t0609900-00
Chr04	irgsp1_rep	three_prime_UTR	30909207	30909557	.	-	.	Parent=Os04t0609900-00
Chr04	irgsp1_rep	three_prime_UTR	30909002	30909100	.	-	.	Parent=Os04t0609900-00
Chr04	irgsp1_rep	mRNA	30914497	30918316	.	-	.	ID=Os04t0610000-01;Name=Os04t0610000-01;Locus_id=Os04g0610000;Note=Similar to H0702G05.12 protein.;Transcript_evidence=AK065814 (DDBJ%2C Best hit);ORF_evidence=Q25AI1 (UniProt);InterPro=Transposase%2C Ptta/En/Spm%2C plant (IPR004252);NIAS_FLcDNA=J013042D18;Expression=AK065814;TENOR=Os04t0610000-01;KEGG=Os04t0610000-01
Chr04	irgsp1_rep	five_prime_UTR	30918315	30918316	.	-	.	Parent=Os04t0610000-01
Chr04	irgsp1_rep	CDS	30917102	30918314	.	-	0	Parent=Os04t0610000-01
Chr04	irgsp1_rep	CDS	30915975	30916225	.	-	2	Parent=Os04t0610000-01
Chr04	irgsp1_rep	CDS	30915694	30915897	.	-	0	Parent=Os04t0610000-01
Chr04	irgsp1_rep	CDS	30915516	30915608	.	-	0	Parent=Os04t0610000-01
Chr04	irgsp1_rep	CDS	30915337	30915444	.	-	0	Parent=Os04t0610000-01
Chr04	irgsp1_rep	CDS	30914932	30915267	.	-	0	Parent=Os04t0610000-01
Chr04	irgsp1_rep	CDS	30914717	30914815	.	-	0	Parent=Os04t0610000-01
Chr04	irgsp1_rep	three_prime_UTR	30914497	30914716	.	-	.	Parent=Os04t0610000-01
Chr04	irgsp1_rep	mRNA	30914219	30917473	.	-	.	ID=Os04t0610000-02;Name=Os04t0610000-02;Locus_id=Os04g0610000;Note=Similar to H0702G05.12 protein.;Transcript_evidence=AK060380 (DDBJ%2C Best hit);ORF_evidence=Q25AI1 (UniProt);InterPro=Transposase%2C Ptta/En/Spm%2C plant (IPR004252);NIAS_FLcDNA=001-009-E01;Expression=AK060380;TENOR=Os04t0610000-02;KEGG=Os04t0610000-02
Chr04	irgsp1_rep	five_prime_UTR	30917472	30917473	.	-	.	Parent=Os04t0610000-02
Chr04	irgsp1_rep	CDS	30917102	30917471	.	-	0	Parent=Os04t0610000-02
Chr04	irgsp1_rep	CDS	30915975	30916225	.	-	2	Parent=Os04t0610000-02
Chr04	irgsp1_rep	CDS	30915694	30915897	.	-	0	Parent=Os04t0610000-02
Chr04	irgsp1_rep	CDS	30915516	30915608	.	-	0	Parent=Os04t0610000-02
Chr04	irgsp1_rep	CDS	30915337	30915444	.	-	0	Parent=Os04t0610000-02
Chr04	irgsp1_rep	CDS	30914932	30915267	.	-	0	Parent=Os04t0610000-02
Chr04	irgsp1_rep	CDS	30914717	30914815	.	-	0	Parent=Os04t0610000-02
Chr04	irgsp1_rep	three_prime_UTR	30914219	30914716	.	-	.	Parent=Os04t0610000-02
Chr04	irgsp1_rep	mRNA	30920567	30923708	.	-	.	ID=Os04t0610100-01;Name=Os04t0610100-01;Locus_id=Os04g0610100;Note=Similar to OSIGBa0152L12.2 protein.;Transcript_evidence=AK062284 (DDBJ%2C Best hit);ORF_evidence=Q01JT2 (UniProt);NIAS_FLcDNA=001-100-D01;Expression=AK062284;TENOR=Os04t0610100-01;KEGG=Os04t0610100-01
Chr04	irgsp1_rep	five_prime_UTR	30923708	30923708	.	-	.	Parent=Os04t0610100-01
Chr04	irgsp1_rep	CDS	30923392	30923707	.	-	0	Parent=Os04t0610100-01
Chr04	irgsp1_rep	CDS	30922310	30922347	.	-	2	Parent=Os04t0610100-01
Chr04	irgsp1_rep	three_prime_UTR	30922036	30922309	.	-	.	Parent=Os04t0610100-01
Chr04	irgsp1_rep	three_prime_UTR	30921823	30921933	.	-	.	Parent=Os04t0610100-01
Chr04	irgsp1_rep	three_prime_UTR	30921400	30921708	.	-	.	Parent=Os04t0610100-01
Chr04	irgsp1_rep	three_prime_UTR	30921143	30921202	.	-	.	Parent=Os04t0610100-01
Chr04	irgsp1_rep	three_prime_UTR	30920567	30920860	.	-	.	Parent=Os04t0610100-01
Chr04	irgsp1_rep	mRNA	30927631	30934094	.	+	.	ID=Os04t0610200-01;Name=Os04t0610200-01;Locus_id=Os04g0610200;Note=Similar to OSIGBa0152L12.4 protein.;Transcript_evidence=AK120522 (DDBJ%2C Best hit);ORF_evidence=Q01JT0 (UniProt);InterPro=Transposase%2C Ptta/En/Spm%2C plant (IPR004252);NIAS_FLcDNA=J013125C13;TENOR=Os04t0610200-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	30927631	30927690	.	+	.	Parent=Os04t0610200-01
Chr04	irgsp1_rep	CDS	30927691	30928104	.	+	0	Parent=Os04t0610200-01
Chr04	irgsp1_rep	CDS	30929222	30930512	.	+	0	Parent=Os04t0610200-01
Chr04	irgsp1_rep	CDS	30930591	30930661	.	+	2	Parent=Os04t0610200-01
Chr04	irgsp1_rep	CDS	30931270	30931403	.	+	0	Parent=Os04t0610200-01
Chr04	irgsp1_rep	CDS	30931497	30931677	.	+	1	Parent=Os04t0610200-01
Chr04	irgsp1_rep	CDS	30931760	30932191	.	+	0	Parent=Os04t0610200-01
Chr04	irgsp1_rep	CDS	30932267	30932368	.	+	0	Parent=Os04t0610200-01
Chr04	irgsp1_rep	CDS	30932467	30932772	.	+	0	Parent=Os04t0610200-01
Chr04	irgsp1_rep	CDS	30932846	30932908	.	+	0	Parent=Os04t0610200-01
Chr04	irgsp1_rep	CDS	30933849	30933947	.	+	0	Parent=Os04t0610200-01
Chr04	irgsp1_rep	three_prime_UTR	30933948	30934094	.	+	.	Parent=Os04t0610200-01
Chr04	irgsp1_rep	mRNA	30934307	30934574	.	+	.	ID=Os04t0610301-01;Name=Os04t0610301-01;Locus_id=Os04g0610301;Note=Non-protein coding transcript.;Transcript_evidence=AK242409 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080074O19;TENOR=Os04t0610301-01
Chr04	irgsp1_rep	exon	30934307	30934574	.	+	.	Parent=Os04t0610301-01
Chr04	irgsp1_rep	mRNA	30939170	30940160	.	+	.	ID=Os04t0610400-01;Name=Os04t0610400-01;Locus_id=Os04g0610400;RAP-DB Gene Symbol Synonym(s)=ERF77%2C OsAP2-39%2C OsERF#077%2C OsERF077%2C OsERF77%2C AP2/EREBP#149%2C AP2/EREBP149;RAP-DB Gene Name Synonym(s)=ETHYLENE RESPONSE FACTOR 77%2C APETALA-2-like transcription factor OsAP2-39%2C ethylene response factor 77%2C APETALA2/ethylene-responsive element binding protein 149;CGSNL Gene Symbol=ERF77;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 77;Oryzabase Gene Symbol Synonym(s)=OsAP2-39%2C OsERF#077%2C OsERF077%2C OsERF77%2C AP2/EREBP#149%2C AP2/EREBP149%2C DLN121%2C OsDLN121;Oryzabase Gene Name Synonym(s)=APETALA-2-like transcription factor OsAP2-39%2C ethylene response factor 77%2C APETALA2/ethylene-responsive element binding protein 149%2C DLN repressor 121%2C DLN motif protein 121;Note=APETALA-2-like transcription Factor%2C Control of the abscisic acid (ABA)/gibberellin (GA) balance;Transcript_evidence=NM_001060364;ORF_evidence=Q7XPL6;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700);InterPro=DNA-binding domain (IPR016177),AP2/ERF domain (IPR001471);Manual Curation=November 20%2C 2015;Literature_PMID=20838584;Oryzabase=9699;TENOR=Os04t0610400-00
Chr04	irgsp1_rep	five_prime_UTR	30939170	30939292	.	+	.	Parent=Os04t0610400-01
Chr04	irgsp1_rep	CDS	30939293	30939961	.	+	0	Parent=Os04t0610400-01
Chr04	irgsp1_rep	three_prime_UTR	30939962	30940160	.	+	.	Parent=Os04t0610400-01
Chr04	irgsp1_rep	mRNA	30945227	30948687	.	-	.	ID=Os04t0610500-01;Name=Os04t0610500-01;Locus_id=Os04g0610500;Note=Peptidase M24A%2C methionine aminopeptidase%2C subfamily 1 protein.;Transcript_evidence=AK066289 (DDBJ%2C Best hit),AK104817 (DDBJ%2C Best hit);ORF_evidence=B8ATX6 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: cellular process (GO:0009987),Molecular Function: aminopeptidase activity (GO:0004177),Molecular Function: metalloexopeptidase activity (GO:0008235);InterPro=Peptidase M24%2C structural domain (IPR000994),Peptidase M24%2C methionine aminopeptidase (IPR001714),Peptidase M24A%2C methionine aminopeptidase%2C subfamily 1 (IPR002467);NIAS_FLcDNA=J013063M01,001-040-H12;Expression=AK066289;TENOR=Os04t0610500-01;KEGG=Os04t0610500-01 (EC:3.4.11.18)
Chr04	irgsp1_rep	five_prime_UTR	30948586	30948687	.	-	.	Parent=Os04t0610500-01
Chr04	irgsp1_rep	CDS	30948522	30948585	.	-	0	Parent=Os04t0610500-01
Chr04	irgsp1_rep	CDS	30947745	30947817	.	-	2	Parent=Os04t0610500-01
Chr04	irgsp1_rep	CDS	30947367	30947604	.	-	1	Parent=Os04t0610500-01
Chr04	irgsp1_rep	CDS	30947100	30947261	.	-	0	Parent=Os04t0610500-01
Chr04	irgsp1_rep	CDS	30946951	30946992	.	-	0	Parent=Os04t0610500-01
Chr04	irgsp1_rep	CDS	30946776	30946847	.	-	0	Parent=Os04t0610500-01
Chr04	irgsp1_rep	CDS	30946455	30946534	.	-	0	Parent=Os04t0610500-01
Chr04	irgsp1_rep	CDS	30945860	30945957	.	-	1	Parent=Os04t0610500-01
Chr04	irgsp1_rep	CDS	30945681	30945728	.	-	2	Parent=Os04t0610500-01
Chr04	irgsp1_rep	CDS	30945425	30945570	.	-	2	Parent=Os04t0610500-01
Chr04	irgsp1_rep	three_prime_UTR	30945227	30945424	.	-	.	Parent=Os04t0610500-01
Chr04	irgsp1_rep	mRNA	30950939	30952114	.	+	.	ID=Os04t0610600-01;Name=Os04t0610600-01;Locus_id=Os04g0610600;CGSNL Gene Symbol=LEA18;CGSNL Gene Name=LATE EMBRYOGENESIS ABUNDANT PROTEIN 18;Oryzabase Gene Symbol Synonym(s)=OsLEA18;Oryzabase Gene Name Synonym(s)=late embryogenesis abundant protein 18;Note=Similar to Cor14b protein precursor.;Transcript_evidence=AK073109 (DDBJ%2C Best hit);ORF_evidence=Q01JS7 (UniProt);NIAS_FLcDNA=J033022D23;Oryzabase=10185;Expression=AK073109;TENOR=Os04t0610600-01;KEGG=Os04t0610600-01
Chr04	irgsp1_rep	five_prime_UTR	30950939	30951015	.	+	.	Parent=Os04t0610600-01
Chr04	irgsp1_rep	CDS	30951016	30951192	.	+	0	Parent=Os04t0610600-01
Chr04	irgsp1_rep	CDS	30951295	30951942	.	+	0	Parent=Os04t0610600-01
Chr04	irgsp1_rep	three_prime_UTR	30951943	30952114	.	+	.	Parent=Os04t0610600-01
Chr04	irgsp1_rep	mRNA	30952501	30957612	.	-	.	ID=Os04t0610700-01;Name=Os04t0610700-01;Locus_id=Os04g0610700;CGSNL Gene Symbol=HAK15;CGSNL Gene Name=HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 15;Oryzabase Gene Symbol Synonym(s)=OsHAK15;Oryzabase Gene Name Synonym(s)=High-affinity Potassium(K+) Transporter 15%2C Probable potassium transporter 15;Note=Similar to Potassium transporter 13 (AtPOT13) (AtKT5).;Transcript_evidence=AK100672 (DDBJ%2C Best hit);ORF_evidence=Q01JS6 (UniProt);GO=Biological Process: potassium ion transmembrane transport (GO:0071805),Cellular Component: membrane (GO:0016020),Molecular Function: potassium ion transmembrane transporter activity (GO:0015079);InterPro=K+ potassium transporter (IPR003855);NIAS_FLcDNA=J023112N09;Oryzabase=8669;Expression=AK100672;TENOR=Os04t0610700-01;KEGG=Os04t0610700-01
Chr04	irgsp1_rep	five_prime_UTR	30957436	30957612	.	-	.	Parent=Os04t0610700-01
Chr04	irgsp1_rep	CDS	30957085	30957435	.	-	0	Parent=Os04t0610700-01
Chr04	irgsp1_rep	CDS	30956213	30956441	.	-	0	Parent=Os04t0610700-01
Chr04	irgsp1_rep	CDS	30955867	30956115	.	-	2	Parent=Os04t0610700-01
Chr04	irgsp1_rep	CDS	30955640	30955690	.	-	2	Parent=Os04t0610700-01
Chr04	irgsp1_rep	CDS	30955304	30955564	.	-	2	Parent=Os04t0610700-01
Chr04	irgsp1_rep	CDS	30955117	30955169	.	-	2	Parent=Os04t0610700-01
Chr04	irgsp1_rep	CDS	30954903	30955017	.	-	0	Parent=Os04t0610700-01
Chr04	irgsp1_rep	CDS	30954452	30954706	.	-	2	Parent=Os04t0610700-01
Chr04	irgsp1_rep	CDS	30953528	30954050	.	-	2	Parent=Os04t0610700-01
Chr04	irgsp1_rep	CDS	30952848	30953364	.	-	1	Parent=Os04t0610700-01
Chr04	irgsp1_rep	three_prime_UTR	30952501	30952847	.	-	.	Parent=Os04t0610700-01
Chr04	irgsp1_rep	mRNA	30952520	30956172	.	-	.	ID=Os04t0610700-02;Name=Os04t0610700-02;Locus_id=Os04g0610700;CGSNL Gene Symbol=HAK15;CGSNL Gene Name=HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 15;Oryzabase Gene Symbol Synonym(s)=OsHAK15;Oryzabase Gene Name Synonym(s)=High-affinity Potassium(K+) Transporter 15%2C Probable potassium transporter 15;Note=Similar to OSIGBa0152L12.8 protein.;Transcript_evidence=AK060729 (DDBJ%2C Best hit);ORF_evidence=Q01JS6 (UniProt);GO=Biological Process: potassium ion transmembrane transport (GO:0071805),Cellular Component: membrane (GO:0016020),Molecular Function: potassium ion transmembrane transporter activity (GO:0015079);InterPro=K+ potassium transporter (IPR003855);NIAS_FLcDNA=001-032-A01;Oryzabase=8669;Expression=AK060729;TENOR=Os04t0610700-02;KEGG=Os04t0610700-02
Chr04	irgsp1_rep	five_prime_UTR	30956132	30956172	.	-	.	Parent=Os04t0610700-02
Chr04	irgsp1_rep	CDS	30955867	30956131	.	-	0	Parent=Os04t0610700-02
Chr04	irgsp1_rep	CDS	30955614	30955690	.	-	2	Parent=Os04t0610700-02
Chr04	irgsp1_rep	three_prime_UTR	30955304	30955613	.	-	.	Parent=Os04t0610700-02
Chr04	irgsp1_rep	three_prime_UTR	30955117	30955169	.	-	.	Parent=Os04t0610700-02
Chr04	irgsp1_rep	three_prime_UTR	30954903	30955017	.	-	.	Parent=Os04t0610700-02
Chr04	irgsp1_rep	three_prime_UTR	30953528	30954706	.	-	.	Parent=Os04t0610700-02
Chr04	irgsp1_rep	three_prime_UTR	30952520	30953364	.	-	.	Parent=Os04t0610700-02
Chr04	irgsp1_rep	mRNA	30962029	30965392	.	+	.	ID=Os04t0610800-01;Name=Os04t0610800-01;Locus_id=Os04g0610800;CGSNL Gene Symbol=RLIN1;CGSNL Gene Name=RICE LESION INITIATION 1;Oryzabase Gene Symbol Synonym(s)=CPO%2C CPOX%2C LLM1%2C HEMF;Oryzabase Gene Name Synonym(s)=Coproporphyrinogen oxidase%2C coproporphyrinogen III oxidase%2C leaf lesion mimic mutant 1;Note=Similar to Coproporphyrinogen III oxidase (Fragment).;Transcript_evidence=AK070391 (DDBJ%2C Best hit);ORF_evidence=Q01JS5 (UniProt);GO=Biological Process: porphyrin-containing compound biosynthetic process (GO:0006779),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: coproporphyrinogen oxidase activity (GO:0004109);InterPro=Coproporphyrinogen III oxidase%2C aerobic (IPR001260),Coproporphyrinogen III oxidase%2C conserved site (IPR018375);NIAS_FLcDNA=J023050L08;Oryzabase=19972;Expression=AK070391;TENOR=Os04t0610800-01;KEGG=Os04t0610800-01 (EC:1.3.3.3)
Chr04	irgsp1_rep	five_prime_UTR	30962029	30962029	.	+	.	Parent=Os04t0610800-01
Chr04	irgsp1_rep	CDS	30962030	30962320	.	+	0	Parent=Os04t0610800-01
Chr04	irgsp1_rep	CDS	30963145	30963220	.	+	0	Parent=Os04t0610800-01
Chr04	irgsp1_rep	CDS	30963584	30963678	.	+	2	Parent=Os04t0610800-01
Chr04	irgsp1_rep	CDS	30963820	30963903	.	+	0	Parent=Os04t0610800-01
Chr04	irgsp1_rep	CDS	30964185	30964272	.	+	0	Parent=Os04t0610800-01
Chr04	irgsp1_rep	CDS	30964576	30964700	.	+	2	Parent=Os04t0610800-01
Chr04	irgsp1_rep	CDS	30964778	30964876	.	+	0	Parent=Os04t0610800-01
Chr04	irgsp1_rep	CDS	30965090	30965164	.	+	0	Parent=Os04t0610800-01
Chr04	irgsp1_rep	three_prime_UTR	30965165	30965392	.	+	.	Parent=Os04t0610800-01
Chr04	irgsp1_rep	mRNA	30961604	30965392	.	+	.	ID=Os04t0610800-02;Name=Os04t0610800-02;Locus_id=Os04g0610800;RAP-DB Gene Symbol Synonym(s)=RLIN1%2C LLM1;RAP-DB Gene Name Synonym(s)=rice lesion initiation 1%2C leaf lesion mimic mutant 1;CGSNL Gene Symbol=RLIN1;CGSNL Gene Name=RICE LESION INITIATION 1;Oryzabase Gene Symbol Synonym(s)=CPO%2C CPOX%2C LLM1%2C HEMF;Oryzabase Gene Name Synonym(s)=Coproporphyrinogen oxidase%2C coproporphyrinogen III oxidase%2C leaf lesion mimic mutant 1%2C rice lesion initiation 1;Note=Putative coproporphyrinogen III oxidase%2C Lesion initiation%2C Resistance to bacterial blight pathogens;Transcript_evidence=Inferred from literature;ORF_evidence=Q7XPL2;GO=Biological Process: porphyrin-containing compound biosynthetic process (GO:0006779),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: coproporphyrinogen oxidase activity (GO:0004109);InterPro=Oxygen-dependent coproporphyrinogen III oxidase superfamily (IPR036406),Coproporphyrinogen III oxidase%2C aerobic (IPR001260),Coproporphyrinogen III oxidase%2C conserved site (IPR018375);Manual Curation=October 5%2C 2020;Literature_PMID=26410574,21338950;Oryzabase=19972
Chr04	irgsp1_rep	five_prime_UTR	30961604	30961762	.	+	.	Parent=Os04t0610800-02
Chr04	irgsp1_rep	CDS	30961763	30962320	.	+	0	Parent=Os04t0610800-02
Chr04	irgsp1_rep	CDS	30963145	30963220	.	+	0	Parent=Os04t0610800-02
Chr04	irgsp1_rep	CDS	30963584	30963678	.	+	2	Parent=Os04t0610800-02
Chr04	irgsp1_rep	CDS	30963820	30963903	.	+	0	Parent=Os04t0610800-02
Chr04	irgsp1_rep	CDS	30964185	30964272	.	+	0	Parent=Os04t0610800-02
Chr04	irgsp1_rep	CDS	30964576	30964700	.	+	2	Parent=Os04t0610800-02
Chr04	irgsp1_rep	CDS	30964778	30964876	.	+	0	Parent=Os04t0610800-02
Chr04	irgsp1_rep	CDS	30965090	30965164	.	+	0	Parent=Os04t0610800-02
Chr04	irgsp1_rep	three_prime_UTR	30965165	30965392	.	+	.	Parent=Os04t0610800-02
Chr04	irgsp1_rep	mRNA	30974167	30979824	.	+	.	ID=Os04t0610900-01;Name=Os04t0610900-01;Locus_id=Os04g0610900;Oryzabase Gene Symbol Synonym(s)=OsCTR3%2C CTR3;Oryzabase Gene Name Synonym(s)=CONSTITUTIVE TRIPLE-RESPONSE3;Note=Similar to EDR1.;Transcript_evidence=AK120898 (DDBJ%2C Best hit);ORF_evidence=Q01JS4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J023030I02;Oryzabase=14993;Expression=AK120898;TENOR=Os04t0610900-01;KEGG=Os04t0610900-01
Chr04	irgsp1_rep	five_prime_UTR	30974167	30974303	.	+	.	Parent=Os04t0610900-01
Chr04	irgsp1_rep	CDS	30974304	30974798	.	+	0	Parent=Os04t0610900-01
Chr04	irgsp1_rep	CDS	30975476	30975780	.	+	0	Parent=Os04t0610900-01
Chr04	irgsp1_rep	CDS	30976939	30977199	.	+	1	Parent=Os04t0610900-01
Chr04	irgsp1_rep	CDS	30977284	30977492	.	+	1	Parent=Os04t0610900-01
Chr04	irgsp1_rep	CDS	30977581	30977874	.	+	2	Parent=Os04t0610900-01
Chr04	irgsp1_rep	CDS	30977952	30977992	.	+	2	Parent=Os04t0610900-01
Chr04	irgsp1_rep	CDS	30978078	30978146	.	+	0	Parent=Os04t0610900-01
Chr04	irgsp1_rep	CDS	30978255	30978355	.	+	0	Parent=Os04t0610900-01
Chr04	irgsp1_rep	CDS	30978442	30978526	.	+	1	Parent=Os04t0610900-01
Chr04	irgsp1_rep	CDS	30978630	30978728	.	+	0	Parent=Os04t0610900-01
Chr04	irgsp1_rep	CDS	30978822	30978890	.	+	0	Parent=Os04t0610900-01
Chr04	irgsp1_rep	CDS	30979000	30979131	.	+	0	Parent=Os04t0610900-01
Chr04	irgsp1_rep	CDS	30979219	30979313	.	+	0	Parent=Os04t0610900-01
Chr04	irgsp1_rep	CDS	30979431	30979512	.	+	1	Parent=Os04t0610900-01
Chr04	irgsp1_rep	three_prime_UTR	30979513	30979824	.	+	.	Parent=Os04t0610900-01
Chr04	irgsp1_rep	mRNA	30976652	30984103	.	-	.	ID=Os04t0611000-01;Name=Os04t0611000-01;Locus_id=Os04g0611000;Note=Conserved hypothetical protein.;Transcript_evidence=AK240675 (DDBJ%2C Best hit);ORF_evidence=NP_001174088.1 (RefSeq);NIAS_FLcDNA=J033142I21;TENOR=Os04t0611000-01;KEGG=Os04t0611000-01
Chr04	irgsp1_rep	five_prime_UTR	30984028	30984103	.	-	.	Parent=Os04t0611000-01
Chr04	irgsp1_rep	five_prime_UTR	30983325	30983402	.	-	.	Parent=Os04t0611000-01
Chr04	irgsp1_rep	five_prime_UTR	30980965	30982516	.	-	.	Parent=Os04t0611000-01
Chr04	irgsp1_rep	five_prime_UTR	30979614	30980875	.	-	.	Parent=Os04t0611000-01
Chr04	irgsp1_rep	CDS	30978903	30979613	.	-	0	Parent=Os04t0611000-01
Chr04	irgsp1_rep	three_prime_UTR	30976652	30978902	.	-	.	Parent=Os04t0611000-01
Chr04	irgsp1_rep	mRNA	30981507	30984098	.	-	.	ID=Os04t0611000-02;Name=Os04t0611000-02;Locus_id=Os04g0611000;Note=Non-protein coding transcript.;Transcript_evidence=AK288752 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090065G11;TENOR=Os04t0611000-02
Chr04	irgsp1_rep	exon	30984028	30984098	.	-	.	Parent=Os04t0611000-02
Chr04	irgsp1_rep	exon	30983325	30983402	.	-	.	Parent=Os04t0611000-02
Chr04	irgsp1_rep	exon	30981507	30982516	.	-	.	Parent=Os04t0611000-02
Chr04	irgsp1_rep	mRNA	30982454	30983508	.	+	.	ID=Os04t0611050-01;Name=Os04t0611050-01;Locus_id=Os04g0611050;Note=Conserved hypothetical protein.;Transcript_evidence=AK242637 (DDBJ%2C Best hit);ORF_evidence=Q69M18 (UniProt);NIAS_FLcDNA=J090023H18;TENOR=Os04t0611050-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	30982454	30983100	.	+	.	Parent=Os04t0611050-01
Chr04	irgsp1_rep	CDS	30983101	30983214	.	+	0	Parent=Os04t0611050-01
Chr04	irgsp1_rep	three_prime_UTR	30983215	30983508	.	+	.	Parent=Os04t0611050-01
Chr04	irgsp1_rep	mRNA	30995338	30999600	.	+	.	ID=Os04t0611200-01;Name=Os04t0611200-01;Locus_id=Os04g0611200;RAP-DB Gene Symbol Synonym(s)=OsCER2%2C CER2;Oryzabase Gene Symbol Synonym(s)=OsCER2%2C CER2;Oryzabase Gene Name Synonym(s)=ECERIFERUM2%2C ECERIFERUM 2;Note=Cofactor of beta-ketoacyl-CoA synthase%2C Homolog of Arabidopsis CER2%2C Leaf cuticular wax synthesis%2C Very-long-chain fatty acid (VLCFA) elongation;Transcript_evidence=Inferred from literature;ORF_evidence=Q7XPL0;GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);Manual Curation=February 7%2C 2017;Literature_PMID=27913740;Oryzabase=21579;TENOR=Os04t0611200-00;Subcellular location=endoplasmic reticulum (GO:0005783)
Chr04	irgsp1_rep	five_prime_UTR	30995338	30995396	.	+	.	Parent=Os04t0611200-01
Chr04	irgsp1_rep	CDS	30995397	30995861	.	+	0	Parent=Os04t0611200-01
Chr04	irgsp1_rep	CDS	30998324	30999172	.	+	0	Parent=Os04t0611200-01
Chr04	irgsp1_rep	three_prime_UTR	30999173	30999600	.	+	.	Parent=Os04t0611200-01
Chr04	irgsp1_rep	mRNA	30995900	30997072	.	+	.	ID=Os04t0611233-00;Name=Os04t0611233-00;Locus_id=Os04g0611233;Note=Non-protein coding transcript.;Transcript_evidence=CT836481 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os04t0611233-00
Chr04	irgsp1_rep	exon	30995900	30997072	.	+	.	Parent=Os04t0611233-00
Chr04	irgsp1_rep	mRNA	31000205	31001587	.	-	.	ID=Os04t0611266-00;Name=Os04t0611266-00;Locus_id=Os04g0611266;Note=Hypothetical gene.;Transcript_evidence=BT017726 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0611266-00
Chr04	irgsp1_rep	five_prime_UTR	31001515	31001587	.	-	.	Parent=Os04t0611266-00
Chr04	irgsp1_rep	CDS	31001449	31001514	.	-	0	Parent=Os04t0611266-00
Chr04	irgsp1_rep	CDS	31000205	31000443	.	-	0	Parent=Os04t0611266-00
Chr04	irgsp1_rep	mRNA	31000143	31001903	.	+	.	ID=Os04t0611300-01;Name=Os04t0611300-01;Locus_id=Os04g0611300;Note=Conserved hypothetical protein.;Transcript_evidence=AK063022 (DDBJ%2C Best hit),AK062605 (DDBJ%2C Best hit),AK066749 (DDBJ%2C Best hit),AK104924 (DDBJ%2C Best hit);ORF_evidence=A2XXE6 (UniProt);NIAS_FLcDNA=001-110-B06,001-105-A02,J013078O07,001-102-H03;TENOR=Os04t0611300-01
Chr04	irgsp1_rep	five_prime_UTR	31000143	31000226	.	+	.	Parent=Os04t0611300-01
Chr04	irgsp1_rep	CDS	31000227	31000437	.	+	0	Parent=Os04t0611300-01
Chr04	irgsp1_rep	CDS	31001451	31001599	.	+	2	Parent=Os04t0611300-01
Chr04	irgsp1_rep	three_prime_UTR	31001600	31001903	.	+	.	Parent=Os04t0611300-01
Chr04	irgsp1_rep	mRNA	31003855	31007535	.	+	.	ID=Os04t0611400-01;Name=Os04t0611400-01;Locus_id=Os04g0611400;Oryzabase Gene Name Synonym(s)=Vacuolar sorting receptor homolog;Note=Similar to Vacuolar sorting receptor 7 precursor (AtVSR7) (Epidermal growth factor receptor-like protein 3) (AtELP3) (BP80-like protein f) (AtBP80f).;Transcript_evidence=AK105614 (DDBJ%2C Best hit),AK069344 (DDBJ%2C Best hit);ORF_evidence=NP_001152485.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Protease-associated domain%2C PA (IPR003137),EGF-like calcium-binding%2C conserved site (IPR018097);NIAS_FLcDNA=001-200-B09,J023010O14;Oryzabase=20526;TENOR=Os04t0611400-01
Chr04	irgsp1_rep	five_prime_UTR	31003855	31003901	.	+	.	Parent=Os04t0611400-01
Chr04	irgsp1_rep	CDS	31003902	31004904	.	+	0	Parent=Os04t0611400-01
Chr04	irgsp1_rep	CDS	31004994	31005082	.	+	2	Parent=Os04t0611400-01
Chr04	irgsp1_rep	CDS	31005185	31005254	.	+	0	Parent=Os04t0611400-01
Chr04	irgsp1_rep	CDS	31005361	31005444	.	+	2	Parent=Os04t0611400-01
Chr04	irgsp1_rep	CDS	31005543	31005619	.	+	2	Parent=Os04t0611400-01
Chr04	irgsp1_rep	CDS	31005722	31005803	.	+	0	Parent=Os04t0611400-01
Chr04	irgsp1_rep	CDS	31005938	31006020	.	+	2	Parent=Os04t0611400-01
Chr04	irgsp1_rep	CDS	31006361	31006424	.	+	0	Parent=Os04t0611400-01
Chr04	irgsp1_rep	CDS	31006526	31006657	.	+	2	Parent=Os04t0611400-01
Chr04	irgsp1_rep	CDS	31006765	31006868	.	+	2	Parent=Os04t0611400-01
Chr04	irgsp1_rep	CDS	31006992	31007102	.	+	0	Parent=Os04t0611400-01
Chr04	irgsp1_rep	three_prime_UTR	31007103	31007110	.	+	.	Parent=Os04t0611400-01
Chr04	irgsp1_rep	three_prime_UTR	31007235	31007535	.	+	.	Parent=Os04t0611400-01
Chr04	irgsp1_rep	mRNA	31007519	31011846	.	-	.	ID=Os04t0611500-01;Name=Os04t0611500-01;Locus_id=Os04g0611500;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK064469 (DDBJ%2C Best hit);ORF_evidence=Q7X8Z7 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=002-110-H01;Expression=AK064469;TENOR=Os04t0611500-01;KEGG=Os04t0611500-01
Chr04	irgsp1_rep	five_prime_UTR	31011846	31011846	.	-	.	Parent=Os04t0611500-01
Chr04	irgsp1_rep	CDS	31011805	31011845	.	-	0	Parent=Os04t0611500-01
Chr04	irgsp1_rep	CDS	31011563	31011694	.	-	1	Parent=Os04t0611500-01
Chr04	irgsp1_rep	CDS	31011019	31011102	.	-	1	Parent=Os04t0611500-01
Chr04	irgsp1_rep	CDS	31010820	31010937	.	-	1	Parent=Os04t0611500-01
Chr04	irgsp1_rep	CDS	31010270	31010593	.	-	0	Parent=Os04t0611500-01
Chr04	irgsp1_rep	CDS	31010007	31010071	.	-	0	Parent=Os04t0611500-01
Chr04	irgsp1_rep	CDS	31009206	31009377	.	-	1	Parent=Os04t0611500-01
Chr04	irgsp1_rep	CDS	31008794	31008898	.	-	0	Parent=Os04t0611500-01
Chr04	irgsp1_rep	CDS	31008612	31008713	.	-	0	Parent=Os04t0611500-01
Chr04	irgsp1_rep	CDS	31008346	31008516	.	-	0	Parent=Os04t0611500-01
Chr04	irgsp1_rep	CDS	31007982	31008113	.	-	0	Parent=Os04t0611500-01
Chr04	irgsp1_rep	CDS	31007720	31007884	.	-	0	Parent=Os04t0611500-01
Chr04	irgsp1_rep	three_prime_UTR	31007519	31007719	.	-	.	Parent=Os04t0611500-01
Chr04	irgsp1_rep	mRNA	31007675	31013575	.	+	.	ID=Os04t0611600-00;Name=Os04t0611600-00;Locus_id=Os04g0611600;Note=Hypothetical protein.;Transcript_evidence=tplb0059b19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0611600-00
Chr04	irgsp1_rep	five_prime_UTR	31007675	31007904	.	+	.	Parent=Os04t0611600-00
Chr04	irgsp1_rep	five_prime_UTR	31008000	31008113	.	+	.	Parent=Os04t0611600-00
Chr04	irgsp1_rep	five_prime_UTR	31008346	31008511	.	+	.	Parent=Os04t0611600-00
Chr04	irgsp1_rep	five_prime_UTR	31008606	31008701	.	+	.	Parent=Os04t0611600-00
Chr04	irgsp1_rep	five_prime_UTR	31008780	31008910	.	+	.	Parent=Os04t0611600-00
Chr04	irgsp1_rep	five_prime_UTR	31009220	31009371	.	+	.	Parent=Os04t0611600-00
Chr04	irgsp1_rep	five_prime_UTR	31009999	31010091	.	+	.	Parent=Os04t0611600-00
Chr04	irgsp1_rep	five_prime_UTR	31010293	31010297	.	+	.	Parent=Os04t0611600-00
Chr04	irgsp1_rep	CDS	31010298	31010581	.	+	0	Parent=Os04t0611600-00
Chr04	irgsp1_rep	CDS	31010801	31010927	.	+	1	Parent=Os04t0611600-00
Chr04	irgsp1_rep	CDS	31011001	31011075	.	+	0	Parent=Os04t0611600-00
Chr04	irgsp1_rep	three_prime_UTR	31011076	31011101	.	+	.	Parent=Os04t0611600-00
Chr04	irgsp1_rep	three_prime_UTR	31011562	31011694	.	+	.	Parent=Os04t0611600-00
Chr04	irgsp1_rep	three_prime_UTR	31011805	31012682	.	+	.	Parent=Os04t0611600-00
Chr04	irgsp1_rep	three_prime_UTR	31012846	31012939	.	+	.	Parent=Os04t0611600-00
Chr04	irgsp1_rep	three_prime_UTR	31013461	31013575	.	+	.	Parent=Os04t0611600-00
Chr04	irgsp1_rep	mRNA	31019367	31024094	.	+	.	ID=Os04t0611700-00;Name=Os04t0611700-00;Locus_id=Os04g0611700;CGSNL Gene Symbol=KS3;CGSNL Gene Name=ENT-KAURENE SYNTHASE 3;Oryzabase Gene Symbol Synonym(s)=OsKS3%2C OSKS3%2C KS3%2C KSL3%2C OsKSL3%2C OsKS2%2C KS2%2C OsTPS25;Oryzabase Gene Name Synonym(s)=rice ent-kaurene synthase3%2C Ent-kaurene synthase 3%2C Ent-kaurene synthase-like 3%2C kaurene synthase like-3%2C Ent-kaurene synthase-like 2%2C terpene synthase 25;Note=Similar to Ent-kaurene synthase-like 3.;Transcript_evidence=AY347879 (DDBJ%2C Best hit);ORF_evidence=Q0JA83 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: lyase activity (GO:0016829);InterPro=Terpene synthase-like (IPR001906),Terpene synthase%2C metal-binding domain (IPR005630),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930),Terpenoid synthase (IPR008949);Oryzabase=3133;TENOR=Os04t0611700-00;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	31019367	31019670	.	+	0	Parent=Os04t0611700-00
Chr04	irgsp1_rep	CDS	31020190	31020370	.	+	2	Parent=Os04t0611700-00
Chr04	irgsp1_rep	CDS	31020830	31021047	.	+	1	Parent=Os04t0611700-00
Chr04	irgsp1_rep	CDS	31021164	31021275	.	+	2	Parent=Os04t0611700-00
Chr04	irgsp1_rep	CDS	31021362	31021459	.	+	1	Parent=Os04t0611700-00
Chr04	irgsp1_rep	CDS	31021613	31021830	.	+	2	Parent=Os04t0611700-00
Chr04	irgsp1_rep	CDS	31021933	31022049	.	+	0	Parent=Os04t0611700-00
Chr04	irgsp1_rep	CDS	31022197	31022219	.	+	0	Parent=Os04t0611700-00
Chr04	irgsp1_rep	CDS	31022314	31022529	.	+	1	Parent=Os04t0611700-00
Chr04	irgsp1_rep	CDS	31022627	31022768	.	+	1	Parent=Os04t0611700-00
Chr04	irgsp1_rep	CDS	31022913	31023158	.	+	0	Parent=Os04t0611700-00
Chr04	irgsp1_rep	CDS	31023750	31024094	.	+	0	Parent=Os04t0611700-00
Chr04	irgsp1_rep	mRNA	31027347	31031039	.	+	.	ID=Os04t0611800-00;Name=Os04t0611800-00;Locus_id=Os04g0611800;CGSNL Gene Symbol=KS1;CGSNL Gene Name=ENT-KAURENE SYNTHASE 1;Oryzabase Gene Symbol Synonym(s)=OsKS1%2C KS1%2C KS1A%2C KSL1%2C OsKSL1%2C OsKS1A%2C OsKS1B%2C OsKS1C%2C Ks1%2C Os KS1%2C OsTPS26;Oryzabase Gene Name Synonym(s)=rice ent-kaurene synthase1%2C Ent-kaurene synthase 1%2C "Ent-kaur-16-ene synthase%2C chloroplastic"%2C Kaurene synthase 1%2C Ent-kaurene synthase B%2C ent-kaurene synthase I%2C terpene synthase 26;Note=Terpenoid synthase domain containing protein.;Transcript_evidence=AY347877 (DDBJ%2C Best hit);ORF_evidence=Q0JA82 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: lyase activity (GO:0016829);InterPro=Terpene synthase-like (IPR001906),Terpene synthase%2C metal-binding domain (IPR005630),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930),Terpenoid synthase (IPR008949);Oryzabase=3131;Expression=AY347877;TENOR=Os04t0611800-00;KEGG=Os04t0611800-00
Chr04	irgsp1_rep	CDS	31027347	31027638	.	+	0	Parent=Os04t0611800-00
Chr04	irgsp1_rep	CDS	31027748	31027928	.	+	2	Parent=Os04t0611800-00
Chr04	irgsp1_rep	CDS	31028236	31028453	.	+	1	Parent=Os04t0611800-00
Chr04	irgsp1_rep	CDS	31028540	31028660	.	+	2	Parent=Os04t0611800-00
Chr04	irgsp1_rep	CDS	31028728	31028825	.	+	1	Parent=Os04t0611800-00
Chr04	irgsp1_rep	CDS	31028948	31029162	.	+	2	Parent=Os04t0611800-00
Chr04	irgsp1_rep	CDS	31029242	31029354	.	+	0	Parent=Os04t0611800-00
Chr04	irgsp1_rep	CDS	31029434	31029529	.	+	1	Parent=Os04t0611800-00
Chr04	irgsp1_rep	CDS	31029618	31029833	.	+	1	Parent=Os04t0611800-00
Chr04	irgsp1_rep	CDS	31029944	31030082	.	+	1	Parent=Os04t0611800-00
Chr04	irgsp1_rep	CDS	31030174	31030419	.	+	0	Parent=Os04t0611800-00
Chr04	irgsp1_rep	CDS	31030692	31031027	.	+	0	Parent=Os04t0611800-00
Chr04	irgsp1_rep	three_prime_UTR	31031028	31031039	.	+	.	Parent=Os04t0611800-00
Chr04	irgsp1_rep	mRNA	31034090	31041387	.	+	.	ID=Os04t0612000-01;Name=Os04t0612000-01;Locus_id=Os04g0612000;RAP-DB Gene Symbol Synonym(s)=KS2%2C OsKS2%2C KS2%2C KSL2%2C OsKSL2%2C OsTPS27;RAP-DB Gene Name Synonym(s)=ENT-KAURENE SYNTHASE 2%2C rice ent-kaurene synthase2%2C Ent-kaurene synthase 2%2C Ent-kaurene synthase like-2%2C Ent-kaurene synthase-like 2%2C terpene synthase 27;CGSNL Gene Symbol=KS2;CGSNL Gene Name=ENT-KAURENE SYNTHASE 2;Oryzabase Gene Symbol Synonym(s)=OsKS2%2C KS2%2C KSL2%2C OsKSL2%2C OsTPS27;Oryzabase Gene Name Synonym(s)=rice ent-kaurene synthase2%2C Ent-kaurene synthase 2%2C Ent-kaurene synthase like-2%2C Ent-kaurene synthase-like 2%2C terpene synthase 27;Note=Ent-beyerene synthase%2C Phytoalexin biosynthesis%2C Defense response;Transcript_evidence=LC033788 (Yukihikari);ORF_evidence=BAR72396;GO=Biological Process: metabolic process (GO:0008152),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: terpene synthase activity (GO:0010333),Molecular Function: lyase activity (GO:0016829);InterPro=Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid (IPR008930),Terpene synthase%2C N-terminal domain (IPR001906),Isoprenoid synthase domain (IPR008949),Terpene synthase%2C metal-binding domain (IPR005630);Manual Curation=June 2%2C 2015;Literature_PMID=25824047;Oryzabase=3132;TENOR=Os04t0612000-00
Chr04	irgsp1_rep	five_prime_UTR	31034090	31034271	.	+	.	Parent=Os04t0612000-01
Chr04	irgsp1_rep	CDS	31034272	31034410	.	+	0	Parent=Os04t0612000-01
Chr04	irgsp1_rep	CDS	31034885	31035271	.	+	2	Parent=Os04t0612000-01
Chr04	irgsp1_rep	CDS	31035882	31036038	.	+	2	Parent=Os04t0612000-01
Chr04	irgsp1_rep	CDS	31038186	31038406	.	+	1	Parent=Os04t0612000-01
Chr04	irgsp1_rep	CDS	31038492	31038612	.	+	2	Parent=Os04t0612000-01
Chr04	irgsp1_rep	CDS	31038703	31038800	.	+	1	Parent=Os04t0612000-01
Chr04	irgsp1_rep	CDS	31038991	31039203	.	+	2	Parent=Os04t0612000-01
Chr04	irgsp1_rep	CDS	31039284	31039398	.	+	2	Parent=Os04t0612000-01
Chr04	irgsp1_rep	CDS	31039557	31039652	.	+	1	Parent=Os04t0612000-01
Chr04	irgsp1_rep	CDS	31039742	31039957	.	+	1	Parent=Os04t0612000-01
Chr04	irgsp1_rep	CDS	31040059	31040200	.	+	1	Parent=Os04t0612000-01
Chr04	irgsp1_rep	CDS	31040295	31040540	.	+	0	Parent=Os04t0612000-01
Chr04	irgsp1_rep	CDS	31040819	31041127	.	+	0	Parent=Os04t0612000-01
Chr04	irgsp1_rep	three_prime_UTR	31041128	31041387	.	+	.	Parent=Os04t0612000-01
Chr04	irgsp1_rep	mRNA	31041248	31043581	.	-	.	ID=Os04t0612100-01;Name=Os04t0612100-01;Locus_id=Os04g0612100;Note=Conserved hypothetical protein.;Transcript_evidence=AK060663 (DDBJ%2C Best hit);ORF_evidence=A3AXB6 (UniProt);NIAS_FLcDNA=001-028-B06;TENOR=Os04t0612100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31043540	31043581	.	-	.	Parent=Os04t0612100-01
Chr04	irgsp1_rep	CDS	31043458	31043539	.	-	0	Parent=Os04t0612100-01
Chr04	irgsp1_rep	CDS	31042687	31043366	.	-	2	Parent=Os04t0612100-01
Chr04	irgsp1_rep	three_prime_UTR	31042408	31042686	.	-	.	Parent=Os04t0612100-01
Chr04	irgsp1_rep	three_prime_UTR	31041248	31041602	.	-	.	Parent=Os04t0612100-01
Chr04	irgsp1_rep	mRNA	31051207	31051503	.	-	.	ID=Os04t0612301-00;Name=Os04t0612301-00;Locus_id=Os04g0612301;Note=Hypothetical protein.;Transcript_evidence=EU947731 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0612301-00
Chr04	irgsp1_rep	five_prime_UTR	31051503	31051503	.	-	.	Parent=Os04t0612301-00
Chr04	irgsp1_rep	CDS	31051207	31051502	.	-	0	Parent=Os04t0612301-00
Chr04	irgsp1_rep	mRNA	31061682	31062589	.	+	.	ID=Os04t0612500-01;Name=Os04t0612500-01;Locus_id=Os04g0612500;Oryzabase Gene Symbol Synonym(s)=OsHyPRP16%2C HyPRP16;Oryzabase Gene Name Synonym(s)=Hybrid Proline-Rich Protein 16;Note=Similar to 36.4 kDa proline-rich protein.;Transcript_evidence=AK062781 (DDBJ%2C Best hit);ORF_evidence=NP_001152394.1 (RefSeq);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=001-107-B03;Oryzabase=23412;Expression=AK062781;TENOR=Os04t0612500-01;KEGG=Os04t0612500-01
Chr04	irgsp1_rep	five_prime_UTR	31061682	31061736	.	+	.	Parent=Os04t0612500-01
Chr04	irgsp1_rep	CDS	31061737	31061837	.	+	0	Parent=Os04t0612500-01
Chr04	irgsp1_rep	CDS	31062033	31062201	.	+	1	Parent=Os04t0612500-01
Chr04	irgsp1_rep	three_prime_UTR	31062202	31062589	.	+	.	Parent=Os04t0612500-01
Chr04	irgsp1_rep	mRNA	31061961	31062694	.	+	.	ID=Os04t0612500-02;Name=Os04t0612500-02;Locus_id=Os04g0612500;Oryzabase Gene Symbol Synonym(s)=OsHyPRP16%2C HyPRP16;Oryzabase Gene Name Synonym(s)=Hybrid Proline-Rich Protein 16;Note=Similar to Prolin rich protein.;Transcript_evidence=AK062295 (DDBJ%2C Best hit);ORF_evidence=B4G127 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=001-100-F05;Oryzabase=23412;Expression=AK062295;TENOR=Os04t0612500-02;KEGG=Os04t0612500-02
Chr04	irgsp1_rep	five_prime_UTR	31061961	31061961	.	+	.	Parent=Os04t0612500-02
Chr04	irgsp1_rep	CDS	31061962	31062143	.	+	0	Parent=Os04t0612500-02
Chr04	irgsp1_rep	CDS	31062308	31062320	.	+	1	Parent=Os04t0612500-02
Chr04	irgsp1_rep	three_prime_UTR	31062321	31062694	.	+	.	Parent=Os04t0612500-02
Chr04	irgsp1_rep	mRNA	31064108	31068874	.	-	.	ID=Os04t0612600-01;Name=Os04t0612600-01;Locus_id=Os04g0612600;Note=Similar to Coatomer-like protein%2C epsilon subunit.;Transcript_evidence=AK104427 (DDBJ%2C Best hit),AK060707 (DDBJ%2C Best hit);ORF_evidence=Q9MAX6 (UniProt);GO=Biological Process: retrograde vesicle-mediated transport%2C Golgi to ER (GO:0006890),Cellular Component: COPI vesicle coat (GO:0030126),Molecular Function: structural molecule activity (GO:0005198),Molecular Function: binding (GO:0005488);InterPro=Coatomer%2C epsilon subunit (IPR006822),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=006-206-A04,001-030-H03;Expression=AK104427;TENOR=Os04t0612600-01;KEGG=Os04t0612600-01
Chr04	irgsp1_rep	five_prime_UTR	31068743	31068874	.	-	.	Parent=Os04t0612600-01
Chr04	irgsp1_rep	CDS	31068581	31068742	.	-	0	Parent=Os04t0612600-01
Chr04	irgsp1_rep	CDS	31068393	31068476	.	-	0	Parent=Os04t0612600-01
Chr04	irgsp1_rep	CDS	31067281	31067432	.	-	0	Parent=Os04t0612600-01
Chr04	irgsp1_rep	CDS	31066567	31066702	.	-	1	Parent=Os04t0612600-01
Chr04	irgsp1_rep	CDS	31066284	31066439	.	-	0	Parent=Os04t0612600-01
Chr04	irgsp1_rep	CDS	31066054	31066133	.	-	0	Parent=Os04t0612600-01
Chr04	irgsp1_rep	CDS	31064319	31064412	.	-	1	Parent=Os04t0612600-01
Chr04	irgsp1_rep	three_prime_UTR	31064108	31064318	.	-	.	Parent=Os04t0612600-01
Chr04	irgsp1_rep	mRNA	31064070	31068847	.	-	.	ID=Os04t0612600-02;Name=Os04t0612600-02;Locus_id=Os04g0612600;Note=Similar to Coatomer-like protein%2C epsilon subunit.;Transcript_evidence=AK099008 (DDBJ%2C Best hit);ORF_evidence=Q9MAX6 (UniProt);GO=Biological Process: retrograde vesicle-mediated transport%2C Golgi to ER (GO:0006890),Cellular Component: COPI vesicle coat (GO:0030126),Molecular Function: structural molecule activity (GO:0005198),Molecular Function: binding (GO:0005488);InterPro=Coatomer%2C epsilon subunit (IPR006822),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013120E14;TENOR=Os04t0612600-02;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31068743	31068847	.	-	.	Parent=Os04t0612600-02
Chr04	irgsp1_rep	CDS	31068581	31068742	.	-	0	Parent=Os04t0612600-02
Chr04	irgsp1_rep	CDS	31068393	31068476	.	-	0	Parent=Os04t0612600-02
Chr04	irgsp1_rep	CDS	31067281	31067432	.	-	0	Parent=Os04t0612600-02
Chr04	irgsp1_rep	CDS	31066567	31066702	.	-	1	Parent=Os04t0612600-02
Chr04	irgsp1_rep	CDS	31066284	31066439	.	-	0	Parent=Os04t0612600-02
Chr04	irgsp1_rep	CDS	31066054	31066133	.	-	0	Parent=Os04t0612600-02
Chr04	irgsp1_rep	CDS	31064319	31064412	.	-	1	Parent=Os04t0612600-02
Chr04	irgsp1_rep	three_prime_UTR	31064070	31064318	.	-	.	Parent=Os04t0612600-02
Chr04	irgsp1_rep	mRNA	31069629	31073727	.	+	.	ID=Os04t0612700-01;Name=Os04t0612700-01;Locus_id=Os04g0612700;CGSNL Gene Symbol=FC1;CGSNL Gene Name=FLEXIBLE CULM 1;Oryzabase Gene Symbol Synonym(s)=OsCAD7%2C fc1%2C CAD7;Oryzabase Gene Name Synonym(s)=flexible culm1%2C FLEXIBLE CULM1%2C Protein FLEXIBLE CULM 1%2C Cinnamyl alcohol dehydrogenase 7;Note=Similar to Cinnamyl alcohol dehydrogenase (EC 1.1.1.195).;Transcript_evidence=AK102452 (DDBJ%2C Best hit);ORF_evidence=Q0JA75 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),Alcohol dehydrogenase%2C zinc-type%2C conserved site (IPR002328),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033093P08;Oryzabase=8731;Expression=AK102452;TENOR=Os04t0612700-01;KEGG=Os04t0612700-01 (EC:1.1.1.195)
Chr04	irgsp1_rep	five_prime_UTR	31069629	31069667	.	+	.	Parent=Os04t0612700-01
Chr04	irgsp1_rep	CDS	31069668	31069795	.	+	0	Parent=Os04t0612700-01
Chr04	irgsp1_rep	CDS	31071317	31071430	.	+	1	Parent=Os04t0612700-01
Chr04	irgsp1_rep	CDS	31071992	31072532	.	+	1	Parent=Os04t0612700-01
Chr04	irgsp1_rep	CDS	31073127	31073280	.	+	0	Parent=Os04t0612700-01
Chr04	irgsp1_rep	CDS	31073382	31073584	.	+	2	Parent=Os04t0612700-01
Chr04	irgsp1_rep	three_prime_UTR	31073585	31073727	.	+	.	Parent=Os04t0612700-01
Chr04	irgsp1_rep	mRNA	31073723	31076340	.	-	.	ID=Os04t0612800-01;Name=Os04t0612800-01;Locus_id=Os04g0612800;Note=Similar to EMB2217.;Transcript_evidence=AK071230 (DDBJ%2C Best hit);ORF_evidence=XP_002887788.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Smr protein/MutS2 C-terminal (IPR002625),Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J023087G21;Oryzabase=21636;TENOR=Os04t0612800-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31076330	31076340	.	-	.	Parent=Os04t0612800-01
Chr04	irgsp1_rep	CDS	31073978	31076329	.	-	0	Parent=Os04t0612800-01
Chr04	irgsp1_rep	three_prime_UTR	31073723	31073977	.	-	.	Parent=Os04t0612800-01
Chr04	irgsp1_rep	mRNA	31076518	31077776	.	+	.	ID=Os04t0612900-01;Name=Os04t0612900-01;Locus_id=Os04g0612900;Note=Vacuolar ATPase assembly integral membrane protein VMA21-like domain domain containing protein.;Transcript_evidence=AK122039 (DDBJ%2C Best hit);ORF_evidence=XP_002447083.1 (RefSeq);InterPro=Vacuolar ATPase assembly integral membrane protein VMA21-like domain (IPR019013);NIAS_FLcDNA=J033113D07;Expression=AK122039;TENOR=Os04t0612900-01;KEGG=Os04t0612900-01
Chr04	irgsp1_rep	five_prime_UTR	31076518	31076759	.	+	.	Parent=Os04t0612900-01
Chr04	irgsp1_rep	five_prime_UTR	31077191	31077217	.	+	.	Parent=Os04t0612900-01
Chr04	irgsp1_rep	CDS	31077218	31077314	.	+	0	Parent=Os04t0612900-01
Chr04	irgsp1_rep	CDS	31077413	31077639	.	+	2	Parent=Os04t0612900-01
Chr04	irgsp1_rep	three_prime_UTR	31077640	31077776	.	+	.	Parent=Os04t0612900-01
Chr04	irgsp1_rep	mRNA	31078201	31080558	.	-	.	ID=Os04t0613000-01;Name=Os04t0613000-01;Locus_id=Os04g0613000;RAP-DB Gene Symbol Synonym(s)=ZIP3%2C OsZIP3;RAP-DB Gene Name Synonym(s)=ZINC TRANSPORTER 3%2C zinc transporter 3%2C Zrt-Irt-like protein 3%2C Zinc-regulated transporter 3%2C zinc transporter OsZIP3;CGSNL Gene Symbol=ZIP3;CGSNL Gene Name=ZINC TRANSPORTER 3;Oryzabase Gene Symbol Synonym(s)=OsZIP3;Oryzabase Gene Name Synonym(s)=zinc transporter 3%2C Zrt-Irt-like protein 3%2C Zinc-regulated transporter 3%2C zinc transporter OsZIP3;Note=Zinc transporter%2C Preferential distribution of Zn to developing tissues;Transcript_evidence=AY323915,AK069804;ORF_evidence=Q7XLD4;GO=Biological Process: metal ion transport (GO:0030001),Biological Process: transmembrane transport (GO:0055085),Biological Process: zinc II ion transmembrane transport (GO:0071577),Molecular Function: zinc ion transmembrane transporter activity (GO:0005385),Molecular Function: metal ion transmembrane transporter activity (GO:0046873),Cellular Component: membrane (GO:0016020),Cellular Component: integral component of membrane (GO:0016021);InterPro=Zinc/iron permease (IPR003689),Zinc/iron permease%2C fungal/plant (IPR004698);NIAS_FLcDNA=J023026J07;Manual Curation=October 20%2C 2015;Literature_PMID=26332571,12970480;Oryzabase=6769;Expression=AK069804;TENOR=Os04t0613000-01;KEGG=Os04t0613000-01
Chr04	irgsp1_rep	five_prime_UTR	31080335	31080558	.	-	.	Parent=Os04t0613000-01
Chr04	irgsp1_rep	CDS	31079696	31080334	.	-	0	Parent=Os04t0613000-01
Chr04	irgsp1_rep	CDS	31079214	31079363	.	-	0	Parent=Os04t0613000-01
Chr04	irgsp1_rep	CDS	31078401	31078706	.	-	0	Parent=Os04t0613000-01
Chr04	irgsp1_rep	three_prime_UTR	31078201	31078400	.	-	.	Parent=Os04t0613000-01
Chr04	irgsp1_rep	mRNA	31078400	31080220	.	+	.	ID=Os04t0613100-00;Name=Os04t0613100-00;Locus_id=Os04g0613100;Note=Non-protein coding transcript.;Transcript_evidence=EU967967 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0613100-00
Chr04	irgsp1_rep	exon	31078400	31078750	.	+	.	Parent=Os04t0613100-00
Chr04	irgsp1_rep	exon	31079617	31080220	.	+	.	Parent=Os04t0613100-00
Chr04	irgsp1_rep	mRNA	31089267	31092608	.	+	.	ID=Os04t0613200-01;Name=Os04t0613200-01;Locus_id=Os04g0613200;Note=Pectin lyase fold/virulence factor domain containing protein.;Transcript_evidence=AK109490 (DDBJ%2C Best hit);ORF_evidence=NP_001078410.1 (RefSeq);InterPro=Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=001-204-C08;Expression=AK109490;TENOR=Os04t0613200-01;KEGG=Os04t0613200-01
Chr04	irgsp1_rep	five_prime_UTR	31089267	31089269	.	+	.	Parent=Os04t0613200-01
Chr04	irgsp1_rep	CDS	31089270	31089515	.	+	0	Parent=Os04t0613200-01
Chr04	irgsp1_rep	CDS	31090597	31090839	.	+	0	Parent=Os04t0613200-01
Chr04	irgsp1_rep	CDS	31091469	31092482	.	+	0	Parent=Os04t0613200-01
Chr04	irgsp1_rep	three_prime_UTR	31092483	31092608	.	+	.	Parent=Os04t0613200-01
Chr04	irgsp1_rep	mRNA	31095805	31097701	.	-	.	ID=Os04t0613300-01;Name=Os04t0613300-01;Locus_id=Os04g0613300;Note=Protein of unknown function DUF2358 domain containing protein.;Transcript_evidence=AK065653 (DDBJ%2C Best hit);ORF_evidence=A3AXC3 (UniProt);InterPro=Protein of unknown function DUF2358 (IPR018790);NIAS_FLcDNA=J013037F04;Expression=AK065653;TENOR=Os04t0613300-01;KEGG=Os04t0613300-01
Chr04	irgsp1_rep	five_prime_UTR	31097499	31097701	.	-	.	Parent=Os04t0613300-01
Chr04	irgsp1_rep	CDS	31097155	31097498	.	-	0	Parent=Os04t0613300-01
Chr04	irgsp1_rep	CDS	31096051	31096552	.	-	1	Parent=Os04t0613300-01
Chr04	irgsp1_rep	three_prime_UTR	31095805	31096050	.	-	.	Parent=Os04t0613300-01
Chr04	irgsp1_rep	mRNA	31098634	31102729	.	-	.	ID=Os04t0613400-00;Name=Os04t0613400-00;Locus_id=Os04g0613400;Note=Similar to Cell differentiation protein rcd1.;Transcript_evidence=BT035573 (DDBJ);ORF_evidence=B6TRX0 (UniProt);InterPro=Cell differentiation%2C Rcd1-like (IPR007216);TENOR=Os04t0613400-00;KEGG=Os04t0613400-00
Chr04	irgsp1_rep	CDS	31102526	31102729	.	-	0	Parent=Os04t0613400-00
Chr04	irgsp1_rep	CDS	31101806	31101877	.	-	0	Parent=Os04t0613400-00
Chr04	irgsp1_rep	CDS	31101494	31101583	.	-	0	Parent=Os04t0613400-00
Chr04	irgsp1_rep	CDS	31101280	31101322	.	-	0	Parent=Os04t0613400-00
Chr04	irgsp1_rep	CDS	31100759	31100865	.	-	2	Parent=Os04t0613400-00
Chr04	irgsp1_rep	CDS	31100074	31100169	.	-	0	Parent=Os04t0613400-00
Chr04	irgsp1_rep	CDS	31099284	31099474	.	-	0	Parent=Os04t0613400-00
Chr04	irgsp1_rep	CDS	31099129	31099198	.	-	1	Parent=Os04t0613400-00
Chr04	irgsp1_rep	CDS	31098918	31099025	.	-	0	Parent=Os04t0613400-00
Chr04	irgsp1_rep	three_prime_UTR	31098634	31098917	.	-	.	Parent=Os04t0613400-00
Chr04	irgsp1_rep	mRNA	31103334	31104657	.	+	.	ID=Os04t0613500-00;Name=Os04t0613500-00;Locus_id=Os04g0613500;Oryzabase Gene Name Synonym(s)=Ribosomal protein S11;Note=Similar to 40S ribosomal protein S11.;Transcript_evidence=D29727 (DDBJ%2C Best hit);ORF_evidence=NP_001105562.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S17 (IPR000266);Oryzabase=17753;Expression=D29727;TENOR=Os04t0613500-00;KEGG=Os04t0613500-00
Chr04	irgsp1_rep	five_prime_UTR	31103334	31103408	.	+	.	Parent=Os04t0613500-00
Chr04	irgsp1_rep	CDS	31103409	31103420	.	+	0	Parent=Os04t0613500-00
Chr04	irgsp1_rep	CDS	31104047	31104087	.	+	0	Parent=Os04t0613500-00
Chr04	irgsp1_rep	CDS	31104172	31104272	.	+	1	Parent=Os04t0613500-00
Chr04	irgsp1_rep	CDS	31104572	31104657	.	+	2	Parent=Os04t0613500-00
Chr04	irgsp1_rep	mRNA	31105989	31107921	.	+	.	ID=Os04t0613600-00;Name=Os04t0613600-00;Locus_id=Os04g0613600;Oryzabase Gene Name Synonym(s)=Ribosomal protein S11;Note=Similar to 40S ribosomal protein S11.;Transcript_evidence=AK121056 (DDBJ%2C Secondary hit);ORF_evidence=NP_001105562.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S17 (IPR000266),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),Ribosomal protein S17%2C archaeal (IPR019978),Ribosomal protein S17%2C conserved site (IPR019979);Oryzabase=17685;Expression=AK121056;TENOR=Os04t0613600-00;KEGG=Os04t0613600-00
Chr04	irgsp1_rep	five_prime_UTR	31105989	31106114	.	+	.	Parent=Os04t0613600-00
Chr04	irgsp1_rep	CDS	31106115	31106126	.	+	0	Parent=Os04t0613600-00
Chr04	irgsp1_rep	CDS	31106635	31106675	.	+	0	Parent=Os04t0613600-00
Chr04	irgsp1_rep	CDS	31106763	31106863	.	+	1	Parent=Os04t0613600-00
Chr04	irgsp1_rep	CDS	31107196	31107338	.	+	2	Parent=Os04t0613600-00
Chr04	irgsp1_rep	CDS	31107411	31107502	.	+	0	Parent=Os04t0613600-00
Chr04	irgsp1_rep	CDS	31107648	31107744	.	+	1	Parent=Os04t0613600-00
Chr04	irgsp1_rep	three_prime_UTR	31107745	31107921	.	+	.	Parent=Os04t0613600-00
Chr04	irgsp1_rep	mRNA	31108938	31113437	.	-	.	ID=Os04t0613700-01;Name=Os04t0613700-01;Locus_id=Os04g0613700;CGSNL Gene Symbol=UAP2;CGSNL Gene Name=UDP-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE 2;Oryzabase Gene Symbol Synonym(s)=OsUAP2;Oryzabase Gene Name Synonym(s)=UDP-N-acetylglucosamine pyrophosphorylase 2;Note=Similar to UDP-N-acetylglucosamine pyrophosphorylase.;Transcript_evidence=AK064783 (DDBJ%2C Best hit);ORF_evidence=B6T8T3 (UniProt);NIAS_FLcDNA=J013000B13;Oryzabase=21610;TENOR=Os04t0613700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31113293	31113437	.	-	.	Parent=Os04t0613700-01
Chr04	irgsp1_rep	CDS	31113100	31113292	.	-	0	Parent=Os04t0613700-01
Chr04	irgsp1_rep	CDS	31112466	31112488	.	-	2	Parent=Os04t0613700-01
Chr04	irgsp1_rep	three_prime_UTR	31112434	31112465	.	-	.	Parent=Os04t0613700-01
Chr04	irgsp1_rep	three_prime_UTR	31112060	31112211	.	-	.	Parent=Os04t0613700-01
Chr04	irgsp1_rep	three_prime_UTR	31111922	31111961	.	-	.	Parent=Os04t0613700-01
Chr04	irgsp1_rep	three_prime_UTR	31111485	31111568	.	-	.	Parent=Os04t0613700-01
Chr04	irgsp1_rep	three_prime_UTR	31111285	31111397	.	-	.	Parent=Os04t0613700-01
Chr04	irgsp1_rep	three_prime_UTR	31111076	31111150	.	-	.	Parent=Os04t0613700-01
Chr04	irgsp1_rep	three_prime_UTR	31110812	31110851	.	-	.	Parent=Os04t0613700-01
Chr04	irgsp1_rep	three_prime_UTR	31110638	31110720	.	-	.	Parent=Os04t0613700-01
Chr04	irgsp1_rep	three_prime_UTR	31110476	31110553	.	-	.	Parent=Os04t0613700-01
Chr04	irgsp1_rep	three_prime_UTR	31110254	31110397	.	-	.	Parent=Os04t0613700-01
Chr04	irgsp1_rep	three_prime_UTR	31110099	31110166	.	-	.	Parent=Os04t0613700-01
Chr04	irgsp1_rep	three_prime_UTR	31109778	31109892	.	-	.	Parent=Os04t0613700-01
Chr04	irgsp1_rep	three_prime_UTR	31109515	31109671	.	-	.	Parent=Os04t0613700-01
Chr04	irgsp1_rep	three_prime_UTR	31108938	31109408	.	-	.	Parent=Os04t0613700-01
Chr04	irgsp1_rep	mRNA	31108946	31110554	.	-	.	ID=Os04t0613700-02;Name=Os04t0613700-02;Locus_id=Os04g0613700;CGSNL Gene Symbol=UAP2;CGSNL Gene Name=UDP-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE 2;Oryzabase Gene Symbol Synonym(s)=OsUAP2;Oryzabase Gene Name Synonym(s)=UDP-N-acetylglucosamine pyrophosphorylase 2;Note=Similar to cDNA clone:J013000B13%2C full insert sequence.;Transcript_evidence=AK100926 (DDBJ%2C Best hit);ORF_evidence=B7EA04 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=UTP--glucose-1-phosphate uridylyltransferase (IPR002618);NIAS_FLcDNA=J023134L01;Oryzabase=21610;Expression=AK100926;TENOR=Os04t0613700-02;KEGG=Os04t0613700-02 (EC:2.7.7.23)
Chr04	irgsp1_rep	five_prime_UTR	31110554	31110554	.	-	.	Parent=Os04t0613700-02
Chr04	irgsp1_rep	CDS	31110476	31110553	.	-	0	Parent=Os04t0613700-02
Chr04	irgsp1_rep	CDS	31110254	31110397	.	-	0	Parent=Os04t0613700-02
Chr04	irgsp1_rep	CDS	31110099	31110166	.	-	0	Parent=Os04t0613700-02
Chr04	irgsp1_rep	CDS	31109778	31109892	.	-	1	Parent=Os04t0613700-02
Chr04	irgsp1_rep	CDS	31109515	31109671	.	-	0	Parent=Os04t0613700-02
Chr04	irgsp1_rep	CDS	31109311	31109408	.	-	2	Parent=Os04t0613700-02
Chr04	irgsp1_rep	three_prime_UTR	31108946	31109310	.	-	.	Parent=Os04t0613700-02
Chr04	irgsp1_rep	mRNA	31108921	31109362	.	-	.	ID=Os04t0613700-03;Name=Os04t0613700-03;Locus_id=Os04g0613700;CGSNL Gene Symbol=UAP2;CGSNL Gene Name=UDP-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE 2;Oryzabase Gene Symbol Synonym(s)=OsUAP2;Oryzabase Gene Name Synonym(s)=UDP-N-acetylglucosamine pyrophosphorylase 2;Note=Non-protein coding transcript.;Transcript_evidence=AK105086 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-046-H10;Oryzabase=21610;TENOR=Os04t0613700-03
Chr04	irgsp1_rep	exon	31108921	31109362	.	-	.	Parent=Os04t0613700-03
Chr04	irgsp1_rep	mRNA	31119430	31124152	.	-	.	ID=Os04t0613800-01;Name=Os04t0613800-01;Locus_id=Os04g0613800;Note=Methyl-CpG DNA binding domain containing protein.;Transcript_evidence=AK070022 (DDBJ%2C Best hit);ORF_evidence=B7E5C1 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Methyl-CpG DNA binding (IPR001739),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J023036C24;Expression=AK070022;TENOR=Os04t0613800-01;KEGG=Os04t0613800-01
Chr04	irgsp1_rep	five_prime_UTR	31122557	31124152	.	-	.	Parent=Os04t0613800-01
Chr04	irgsp1_rep	CDS	31122488	31122556	.	-	0	Parent=Os04t0613800-01
Chr04	irgsp1_rep	CDS	31122271	31122375	.	-	0	Parent=Os04t0613800-01
Chr04	irgsp1_rep	CDS	31121136	31121285	.	-	0	Parent=Os04t0613800-01
Chr04	irgsp1_rep	CDS	31119883	31120743	.	-	0	Parent=Os04t0613800-01
Chr04	irgsp1_rep	three_prime_UTR	31119430	31119882	.	-	.	Parent=Os04t0613800-01
Chr04	irgsp1_rep	mRNA	31119470	31123960	.	-	.	ID=Os04t0613800-02;Name=Os04t0613800-02;Locus_id=Os04g0613800;Note=Methyl-CpG DNA binding domain containing protein.;Transcript_evidence=AK072038 (DDBJ%2C Best hit);ORF_evidence=B7E5C1 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Methyl-CpG DNA binding (IPR001739),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J013107M16;Expression=AK072038;TENOR=Os04t0613800-02;KEGG=Os04t0613800-02
Chr04	irgsp1_rep	five_prime_UTR	31123700	31123960	.	-	.	Parent=Os04t0613800-02
Chr04	irgsp1_rep	five_prime_UTR	31122557	31122594	.	-	.	Parent=Os04t0613800-02
Chr04	irgsp1_rep	CDS	31122488	31122556	.	-	0	Parent=Os04t0613800-02
Chr04	irgsp1_rep	CDS	31122271	31122375	.	-	0	Parent=Os04t0613800-02
Chr04	irgsp1_rep	CDS	31121136	31121285	.	-	0	Parent=Os04t0613800-02
Chr04	irgsp1_rep	CDS	31119883	31120743	.	-	0	Parent=Os04t0613800-02
Chr04	irgsp1_rep	three_prime_UTR	31119470	31119882	.	-	.	Parent=Os04t0613800-02
Chr04	irgsp1_rep	mRNA	31119412	31122323	.	-	.	ID=Os04t0613800-03;Name=Os04t0613800-03;Locus_id=Os04g0613800;Note=Hypothetical conserved gene.;Transcript_evidence=AK060828 (DDBJ%2C Best hit);ORF_evidence=Q7XLC7 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Methyl-CpG DNA binding (IPR001739),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=001-034-C01;Expression=AK060828;TENOR=Os04t0613800-03;KEGG=Os04t0613800-03
Chr04	irgsp1_rep	five_prime_UTR	31122322	31122323	.	-	.	Parent=Os04t0613800-03
Chr04	irgsp1_rep	CDS	31122271	31122321	.	-	0	Parent=Os04t0613800-03
Chr04	irgsp1_rep	CDS	31121136	31121285	.	-	0	Parent=Os04t0613800-03
Chr04	irgsp1_rep	CDS	31119883	31120743	.	-	0	Parent=Os04t0613800-03
Chr04	irgsp1_rep	three_prime_UTR	31119412	31119882	.	-	.	Parent=Os04t0613800-03
Chr04	irgsp1_rep	mRNA	31128314	31133415	.	-	.	ID=Os04t0613900-01;Name=Os04t0613900-01;Locus_id=Os04g0613900;CGSNL Gene Symbol=HAK11;CGSNL Gene Name=HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 11;Oryzabase Gene Symbol Synonym(s)=OsHAK11;Oryzabase Gene Name Synonym(s)=High-affinity Potassium(K+) Transporter 11%2C Probable potassium transporter 11;Note=Similar to Potassium transporter 18.;Transcript_evidence=AK072123 (DDBJ%2C Best hit);ORF_evidence=Q653B6 (UniProt);GO=Biological Process: potassium ion transmembrane transport (GO:0071805),Cellular Component: membrane (GO:0016020),Molecular Function: potassium ion transmembrane transporter activity (GO:0015079);InterPro=K+ potassium transporter (IPR003855);NIAS_FLcDNA=J013122K08;Oryzabase=8665;TENOR=Os04t0613900-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31132549	31133415	.	-	.	Parent=Os04t0613900-01
Chr04	irgsp1_rep	CDS	31132429	31132548	.	-	0	Parent=Os04t0613900-01
Chr04	irgsp1_rep	CDS	31131898	31132123	.	-	0	Parent=Os04t0613900-01
Chr04	irgsp1_rep	CDS	31131478	31131723	.	-	2	Parent=Os04t0613900-01
Chr04	irgsp1_rep	CDS	31131326	31131376	.	-	2	Parent=Os04t0613900-01
Chr04	irgsp1_rep	CDS	31130804	31131064	.	-	2	Parent=Os04t0613900-01
Chr04	irgsp1_rep	CDS	31130663	31130715	.	-	2	Parent=Os04t0613900-01
Chr04	irgsp1_rep	CDS	31130469	31130583	.	-	0	Parent=Os04t0613900-01
Chr04	irgsp1_rep	CDS	31129993	31130247	.	-	2	Parent=Os04t0613900-01
Chr04	irgsp1_rep	CDS	31128523	31129571	.	-	2	Parent=Os04t0613900-01
Chr04	irgsp1_rep	three_prime_UTR	31128314	31128522	.	-	.	Parent=Os04t0613900-01
Chr04	irgsp1_rep	mRNA	31128547	31129579	.	+	.	ID=Os04t0613950-00;Name=Os04t0613950-00;Locus_id=Os04g0613950;Note=Hypothetical protein.;Transcript_evidence=EU968841 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0613950-00;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31128547	31128958	.	+	.	Parent=Os04t0613950-00
Chr04	irgsp1_rep	CDS	31128959	31129414	.	+	0	Parent=Os04t0613950-00
Chr04	irgsp1_rep	three_prime_UTR	31129415	31129579	.	+	.	Parent=Os04t0613950-00
Chr04	irgsp1_rep	mRNA	31139226	31141511	.	+	.	ID=Os04t0614000-01;Name=Os04t0614000-01;Locus_id=Os04g0614000;Note=Similar to Peroxisomal 2%2C4-dienoyl-CoA reductase (EC 1.3.1.34).;Transcript_evidence=AK073265 (DDBJ%2C Best hit);ORF_evidence=Q01K17 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033025B16;Expression=AK073265;TENOR=Os04t0614000-01;KEGG=Os04t0614000-01 (EC:1.3.1.34)
Chr04	irgsp1_rep	five_prime_UTR	31139226	31139353	.	+	.	Parent=Os04t0614000-01
Chr04	irgsp1_rep	CDS	31139354	31139545	.	+	0	Parent=Os04t0614000-01
Chr04	irgsp1_rep	CDS	31140011	31140170	.	+	0	Parent=Os04t0614000-01
Chr04	irgsp1_rep	CDS	31140401	31140570	.	+	2	Parent=Os04t0614000-01
Chr04	irgsp1_rep	CDS	31140649	31140871	.	+	0	Parent=Os04t0614000-01
Chr04	irgsp1_rep	CDS	31141136	31141290	.	+	2	Parent=Os04t0614000-01
Chr04	irgsp1_rep	three_prime_UTR	31141291	31141511	.	+	.	Parent=Os04t0614000-01
Chr04	irgsp1_rep	mRNA	31143100	31144202	.	+	.	ID=Os04t0614100-00;Name=Os04t0614100-00;Locus_id=Os04g0614100;CGSNL Gene Symbol=MADS31;CGSNL Gene Name=MADS BOX GENE 31;Oryzabase Gene Symbol Synonym(s)=OsMADS31;Oryzabase Gene Name Synonym(s)=MADS box gene31%2C MADS-box transcription factor 31;Note=Transcription factor%2C MADS-box domain containing protein.;Transcript_evidence=AY177698 (DDBJ%2C Best hit);ORF_evidence=Q84NC2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box (IPR002100),Transcription factor%2C K-box (IPR002487);Oryzabase=3096;Expression=AY177698;TENOR=Os04t0614100-00;KEGG=Os04t0614100-00
Chr04	irgsp1_rep	CDS	31143100	31143287	.	+	0	Parent=Os04t0614100-00
Chr04	irgsp1_rep	CDS	31143657	31143726	.	+	1	Parent=Os04t0614100-00
Chr04	irgsp1_rep	CDS	31143800	31143961	.	+	0	Parent=Os04t0614100-00
Chr04	irgsp1_rep	CDS	31144062	31144178	.	+	0	Parent=Os04t0614100-00
Chr04	irgsp1_rep	three_prime_UTR	31144179	31144202	.	+	.	Parent=Os04t0614100-00
Chr04	irgsp1_rep	mRNA	31161634	31163557	.	+	.	ID=Os04t0614300-01;Name=Os04t0614300-01;Locus_id=Os04g0614300;Note=Hypothetical conserved gene.;Transcript_evidence=AK287493 (DDBJ%2C Best hit);ORF_evidence=A2XXJ3 (UniProt);NIAS_FLcDNA=J043031I16;TENOR=Os04t0614300-01;KEGG=Os04t0614300-01
Chr04	irgsp1_rep	CDS	31161634	31162116	.	+	0	Parent=Os04t0614300-01
Chr04	irgsp1_rep	CDS	31162542	31162625	.	+	0	Parent=Os04t0614300-01
Chr04	irgsp1_rep	CDS	31162739	31162761	.	+	0	Parent=Os04t0614300-01
Chr04	irgsp1_rep	CDS	31162854	31162872	.	+	1	Parent=Os04t0614300-01
Chr04	irgsp1_rep	three_prime_UTR	31162873	31162895	.	+	.	Parent=Os04t0614300-01
Chr04	irgsp1_rep	three_prime_UTR	31163046	31163105	.	+	.	Parent=Os04t0614300-01
Chr04	irgsp1_rep	three_prime_UTR	31163179	31163295	.	+	.	Parent=Os04t0614300-01
Chr04	irgsp1_rep	three_prime_UTR	31163378	31163557	.	+	.	Parent=Os04t0614300-01
Chr04	irgsp1_rep	mRNA	31169012	31174731	.	+	.	ID=Os04t0614500-01;Name=Os04t0614500-01;Locus_id=Os04g0614500;Note=Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 domain containing protein.;Transcript_evidence=AK100259 (DDBJ%2C Best hit);ORF_evidence=Q01K12 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: transaminase activity (GO:0008483),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferase class-III (IPR005814),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J023062G17;Expression=AK100259;TENOR=Os04t0614500-01;KEGG=Os04t0614500-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31169012	31169273	.	+	.	Parent=Os04t0614500-01
Chr04	irgsp1_rep	five_prime_UTR	31169482	31169484	.	+	.	Parent=Os04t0614500-01
Chr04	irgsp1_rep	CDS	31169485	31169615	.	+	0	Parent=Os04t0614500-01
Chr04	irgsp1_rep	CDS	31169742	31169826	.	+	1	Parent=Os04t0614500-01
Chr04	irgsp1_rep	CDS	31169994	31170066	.	+	0	Parent=Os04t0614500-01
Chr04	irgsp1_rep	CDS	31170171	31170268	.	+	2	Parent=Os04t0614500-01
Chr04	irgsp1_rep	CDS	31170437	31170529	.	+	0	Parent=Os04t0614500-01
Chr04	irgsp1_rep	CDS	31171162	31171235	.	+	0	Parent=Os04t0614500-01
Chr04	irgsp1_rep	CDS	31171560	31171598	.	+	1	Parent=Os04t0614500-01
Chr04	irgsp1_rep	CDS	31171761	31171849	.	+	1	Parent=Os04t0614500-01
Chr04	irgsp1_rep	CDS	31171940	31172016	.	+	2	Parent=Os04t0614500-01
Chr04	irgsp1_rep	CDS	31172097	31172171	.	+	0	Parent=Os04t0614500-01
Chr04	irgsp1_rep	CDS	31172519	31172566	.	+	0	Parent=Os04t0614500-01
Chr04	irgsp1_rep	CDS	31172652	31172735	.	+	0	Parent=Os04t0614500-01
Chr04	irgsp1_rep	CDS	31172815	31172902	.	+	0	Parent=Os04t0614500-01
Chr04	irgsp1_rep	CDS	31172977	31173055	.	+	2	Parent=Os04t0614500-01
Chr04	irgsp1_rep	CDS	31173153	31173243	.	+	1	Parent=Os04t0614500-01
Chr04	irgsp1_rep	CDS	31173805	31173883	.	+	0	Parent=Os04t0614500-01
Chr04	irgsp1_rep	CDS	31174300	31174415	.	+	2	Parent=Os04t0614500-01
Chr04	irgsp1_rep	CDS	31174511	31174585	.	+	0	Parent=Os04t0614500-01
Chr04	irgsp1_rep	three_prime_UTR	31174586	31174731	.	+	.	Parent=Os04t0614500-01
Chr04	irgsp1_rep	mRNA	31176650	31182404	.	+	.	ID=Os04t0614600-01;Name=Os04t0614600-01;Locus_id=Os04g0614600;Oryzabase Gene Symbol Synonym(s)=Osl2%2C l2;Oryzabase Gene Name Synonym(s)=aminotransferase%2C pyruvate-dependent GABA transaminase;Note=Similar to Viroid RNA-binding protein (Fragment).;Transcript_evidence=AK102306 (DDBJ%2C Best hit);ORF_evidence=Q01K11 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: transaminase activity (GO:0008483),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferase class-III (IPR005814),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J033090A04;Oryzabase=13867;Expression=AK102306;TENOR=Os04t0614600-01;KEGG=Os04t0614600-01
Chr04	irgsp1_rep	five_prime_UTR	31176650	31176831	.	+	.	Parent=Os04t0614600-01
Chr04	irgsp1_rep	CDS	31176832	31176885	.	+	0	Parent=Os04t0614600-01
Chr04	irgsp1_rep	CDS	31177588	31177718	.	+	0	Parent=Os04t0614600-01
Chr04	irgsp1_rep	CDS	31177806	31177890	.	+	1	Parent=Os04t0614600-01
Chr04	irgsp1_rep	CDS	31178033	31178105	.	+	0	Parent=Os04t0614600-01
Chr04	irgsp1_rep	CDS	31178235	31178332	.	+	2	Parent=Os04t0614600-01
Chr04	irgsp1_rep	CDS	31178466	31178558	.	+	0	Parent=Os04t0614600-01
Chr04	irgsp1_rep	CDS	31179053	31179126	.	+	0	Parent=Os04t0614600-01
Chr04	irgsp1_rep	CDS	31179339	31179377	.	+	1	Parent=Os04t0614600-01
Chr04	irgsp1_rep	CDS	31179491	31179579	.	+	1	Parent=Os04t0614600-01
Chr04	irgsp1_rep	CDS	31179664	31179740	.	+	2	Parent=Os04t0614600-01
Chr04	irgsp1_rep	CDS	31179831	31179905	.	+	0	Parent=Os04t0614600-01
Chr04	irgsp1_rep	CDS	31180306	31180353	.	+	0	Parent=Os04t0614600-01
Chr04	irgsp1_rep	CDS	31180440	31180523	.	+	0	Parent=Os04t0614600-01
Chr04	irgsp1_rep	CDS	31180655	31180742	.	+	0	Parent=Os04t0614600-01
Chr04	irgsp1_rep	CDS	31180843	31180921	.	+	2	Parent=Os04t0614600-01
Chr04	irgsp1_rep	CDS	31181011	31181101	.	+	1	Parent=Os04t0614600-01
Chr04	irgsp1_rep	CDS	31181194	31181272	.	+	0	Parent=Os04t0614600-01
Chr04	irgsp1_rep	CDS	31181566	31181681	.	+	2	Parent=Os04t0614600-01
Chr04	irgsp1_rep	CDS	31181991	31182068	.	+	0	Parent=Os04t0614600-01
Chr04	irgsp1_rep	three_prime_UTR	31182069	31182404	.	+	.	Parent=Os04t0614600-01
Chr04	irgsp1_rep	mRNA	31178292	31182430	.	+	.	ID=Os04t0614600-02;Name=Os04t0614600-02;Locus_id=Os04g0614600;Oryzabase Gene Symbol Synonym(s)=Osl2%2C l2;Oryzabase Gene Name Synonym(s)=aminotransferase%2C pyruvate-dependent GABA transaminase;Note=Similar to OSIGBa0126B18.7 protein.;Transcript_evidence=AK061967 (DDBJ%2C Best hit);ORF_evidence=Q01K11 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: transaminase activity (GO:0008483),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferase class-III (IPR005814),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=001-042-G12;Oryzabase=13867;Expression=AK061967;TENOR=Os04t0614600-02;KEGG=Os04t0614600-02
Chr04	irgsp1_rep	five_prime_UTR	31178292	31178293	.	+	.	Parent=Os04t0614600-02
Chr04	irgsp1_rep	CDS	31178294	31178332	.	+	0	Parent=Os04t0614600-02
Chr04	irgsp1_rep	CDS	31178466	31178558	.	+	0	Parent=Os04t0614600-02
Chr04	irgsp1_rep	CDS	31179053	31179126	.	+	0	Parent=Os04t0614600-02
Chr04	irgsp1_rep	CDS	31179339	31179377	.	+	1	Parent=Os04t0614600-02
Chr04	irgsp1_rep	CDS	31179491	31179579	.	+	1	Parent=Os04t0614600-02
Chr04	irgsp1_rep	CDS	31179664	31179740	.	+	2	Parent=Os04t0614600-02
Chr04	irgsp1_rep	CDS	31179831	31179905	.	+	0	Parent=Os04t0614600-02
Chr04	irgsp1_rep	CDS	31180306	31180353	.	+	0	Parent=Os04t0614600-02
Chr04	irgsp1_rep	CDS	31180440	31180523	.	+	0	Parent=Os04t0614600-02
Chr04	irgsp1_rep	CDS	31180655	31180742	.	+	0	Parent=Os04t0614600-02
Chr04	irgsp1_rep	CDS	31180843	31180921	.	+	2	Parent=Os04t0614600-02
Chr04	irgsp1_rep	CDS	31181011	31181101	.	+	1	Parent=Os04t0614600-02
Chr04	irgsp1_rep	CDS	31181194	31181272	.	+	0	Parent=Os04t0614600-02
Chr04	irgsp1_rep	CDS	31181566	31181681	.	+	2	Parent=Os04t0614600-02
Chr04	irgsp1_rep	CDS	31181991	31182068	.	+	0	Parent=Os04t0614600-02
Chr04	irgsp1_rep	three_prime_UTR	31182069	31182430	.	+	.	Parent=Os04t0614600-02
Chr04	irgsp1_rep	mRNA	31189280	31193896	.	+	.	ID=Os04t0614650-00;Name=Os04t0614650-00;Locus_id=Os04g0614650;Note=Similar to OSIGBa0126B18.8 protein.;Transcript_evidence=EU946518 (DDBJ);ORF_evidence=Q01K10 (UniProt);InterPro=Prefoldin (IPR009053);TENOR=Os04t0614650-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31189280	31189294	.	+	.	Parent=Os04t0614650-00
Chr04	irgsp1_rep	CDS	31189295	31193896	.	+	0	Parent=Os04t0614650-00
Chr04	irgsp1_rep	mRNA	31194936	31196293	.	+	.	ID=Os04t0614700-01;Name=Os04t0614700-01;Locus_id=Os04g0614700;Note=Similar to OSIGBa0126B18.8 protein.;Transcript_evidence=AK058602 (DDBJ%2C Best hit);ORF_evidence=Q01K10 (UniProt);NIAS_FLcDNA=001-017-H09;Expression=AK058602;TENOR=Os04t0614700-01;KEGG=Os04t0614700-01
Chr04	irgsp1_rep	CDS	31194936	31195094	.	+	0	Parent=Os04t0614700-01
Chr04	irgsp1_rep	CDS	31195452	31195571	.	+	0	Parent=Os04t0614700-01
Chr04	irgsp1_rep	CDS	31195685	31195906	.	+	0	Parent=Os04t0614700-01
Chr04	irgsp1_rep	three_prime_UTR	31195907	31196293	.	+	.	Parent=Os04t0614700-01
Chr04	irgsp1_rep	mRNA	31205267	31214632	.	+	.	ID=Os04t0615000-01;Name=Os04t0615000-01;Locus_id=Os04g0615000;RAP-DB Gene Symbol Synonym(s)=NAL1%2C nal1%2C cul1%2C GPS%2C SPIKE%2C SPIKE/LSCHL4/NAL1/GPS%2C SPIKE/NAL1%2C LSCHL4;RAP-DB Gene Name Synonym(s)=NARROW LEAF 1%2C narrow leaf1%2C narrow leaf 1%2C narrow leaf-1%2C curl leaf-1%2C Green for photosysthesis%2C SPIKELET NUMBER;CGSNL Gene Symbol=NAL1;CGSNL Gene Name=NARROW LEAF 1;Oryzabase Gene Symbol Synonym(s)=nal1%2C cul1%2C GPS%2C SPIKE%2C SPIKE/LSCHL4/NAL1/GPS%2C SPIKE/NAL1%2C LSCHL4;Oryzabase Gene Name Synonym(s)=narrow leaf1%2C narrow leaf 1%2C narrow leaf-1%2C curl leaf-1%2C Green for photosysthesis%2C SPIKELET NUMBER;Note=Control of lateral leaf growth%2C panicle number;Transcript_evidence=EU093963;ORF_evidence=B4XT64;InterPro=Peptidase S1%2C PA clan (IPR009003);Manual Curation=September 1%2C 2016;Literature_PMID=18562767;Oryzabase=587;TENOR=Os04t0615000-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31205267	31205397	.	+	.	Parent=Os04t0615000-01
Chr04	irgsp1_rep	CDS	31205398	31205865	.	+	0	Parent=Os04t0615000-01
Chr04	irgsp1_rep	CDS	31211854	31211997	.	+	0	Parent=Os04t0615000-01
Chr04	irgsp1_rep	CDS	31212716	31212956	.	+	0	Parent=Os04t0615000-01
Chr04	irgsp1_rep	CDS	31213294	31213794	.	+	2	Parent=Os04t0615000-01
Chr04	irgsp1_rep	CDS	31213950	31214344	.	+	2	Parent=Os04t0615000-01
Chr04	irgsp1_rep	three_prime_UTR	31214345	31214632	.	+	.	Parent=Os04t0615000-01
Chr04	irgsp1_rep	mRNA	31215137	31219569	.	+	.	ID=Os04t0615100-01;Name=Os04t0615100-01;Locus_id=Os04g0615100;Note=Similar to Lecithine cholesterol acyltransferase-like protein.;Transcript_evidence=AK069739 (DDBJ%2C Best hit);ORF_evidence=Q71LX7 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: O-acyltransferase activity (GO:0008374);InterPro=Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase (IPR003386);NIAS_FLcDNA=J023027J22;Expression=AK069739;TENOR=Os04t0615100-01;KEGG=Os04t0615100-01
Chr04	irgsp1_rep	five_prime_UTR	31215137	31215568	.	+	.	Parent=Os04t0615100-01
Chr04	irgsp1_rep	CDS	31215569	31215803	.	+	0	Parent=Os04t0615100-01
Chr04	irgsp1_rep	CDS	31216226	31216317	.	+	2	Parent=Os04t0615100-01
Chr04	irgsp1_rep	CDS	31216701	31216819	.	+	0	Parent=Os04t0615100-01
Chr04	irgsp1_rep	CDS	31216999	31217134	.	+	1	Parent=Os04t0615100-01
Chr04	irgsp1_rep	CDS	31217239	31217290	.	+	0	Parent=Os04t0615100-01
Chr04	irgsp1_rep	CDS	31217458	31217558	.	+	2	Parent=Os04t0615100-01
Chr04	irgsp1_rep	CDS	31217668	31217848	.	+	0	Parent=Os04t0615100-01
Chr04	irgsp1_rep	CDS	31217942	31218101	.	+	2	Parent=Os04t0615100-01
Chr04	irgsp1_rep	CDS	31218534	31218588	.	+	1	Parent=Os04t0615100-01
Chr04	irgsp1_rep	CDS	31218695	31218748	.	+	0	Parent=Os04t0615100-01
Chr04	irgsp1_rep	CDS	31218855	31219271	.	+	0	Parent=Os04t0615100-01
Chr04	irgsp1_rep	three_prime_UTR	31219272	31219569	.	+	.	Parent=Os04t0615100-01
Chr04	irgsp1_rep	mRNA	31219893	31220898	.	-	.	ID=Os04t0615200-01;Name=Os04t0615200-01;Locus_id=Os04g0615200;Note=Hypothetical protein.;Transcript_evidence=AK101227 (DDBJ%2C Best hit),AK063824 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J033031F14,001-122-A06;TENOR=Os04t0615200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31220783	31220898	.	-	.	Parent=Os04t0615200-01
Chr04	irgsp1_rep	CDS	31220737	31220782	.	-	0	Parent=Os04t0615200-01
Chr04	irgsp1_rep	CDS	31220318	31220465	.	-	2	Parent=Os04t0615200-01
Chr04	irgsp1_rep	CDS	31220147	31220192	.	-	1	Parent=Os04t0615200-01
Chr04	irgsp1_rep	three_prime_UTR	31219893	31220146	.	-	.	Parent=Os04t0615200-01
Chr04	irgsp1_rep	mRNA	31226065	31229570	.	+	.	ID=Os04t0615500-01;Name=Os04t0615500-01;Locus_id=Os04g0615500;CGSNL Gene Symbol=ISC39;CGSNL Gene Name=IRON-SULFUR CLUSTER PROTEIN 39;Oryzabase Gene Symbol Synonym(s)=OsISC39;Oryzabase Gene Name Synonym(s)=Iron-sulfur cluster protein 39;Note=Similar to H0525G02.2 protein.;Transcript_evidence=AK242784 (DDBJ%2C Best hit);ORF_evidence=Q00RR8 (UniProt);InterPro=APO protein%2C plant (IPR008512),APO domain (IPR023342);NIAS_FLcDNA=J090056F05;Oryzabase=13441;TENOR=Os04t0615500-01;KEGG=Os04t0615500-01
Chr04	irgsp1_rep	five_prime_UTR	31226065	31226581	.	+	.	Parent=Os04t0615500-01
Chr04	irgsp1_rep	CDS	31226582	31226603	.	+	0	Parent=Os04t0615500-01
Chr04	irgsp1_rep	CDS	31226697	31226752	.	+	2	Parent=Os04t0615500-01
Chr04	irgsp1_rep	CDS	31227483	31227844	.	+	0	Parent=Os04t0615500-01
Chr04	irgsp1_rep	CDS	31227996	31228830	.	+	1	Parent=Os04t0615500-01
Chr04	irgsp1_rep	three_prime_UTR	31228831	31228975	.	+	.	Parent=Os04t0615500-01
Chr04	irgsp1_rep	three_prime_UTR	31229068	31229570	.	+	.	Parent=Os04t0615500-01
Chr04	irgsp1_rep	mRNA	31230645	31231968	.	-	.	ID=Os04t0615550-00;Name=Os04t0615550-00;Locus_id=Os04g0615550;Note=Hypothetical gene.;Transcript_evidence=EU949920 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0615550-00
Chr04	irgsp1_rep	five_prime_UTR	31231048	31231968	.	-	.	Parent=Os04t0615550-00
Chr04	irgsp1_rep	CDS	31230645	31231047	.	-	0	Parent=Os04t0615550-00
Chr04	irgsp1_rep	mRNA	31231440	31232057	.	+	.	ID=Os04t0615600-01;Name=Os04t0615600-01;Locus_id=Os04g0615600;Note=Similar to H0525G02.3 protein.;Transcript_evidence=AK111092 (DDBJ%2C Best hit);ORF_evidence=Q00RR7 (UniProt);NIAS_FLcDNA=002-175-G03;Expression=AK111092;TENOR=Os04t0615600-01;KEGG=Os04t0615600-01
Chr04	irgsp1_rep	five_prime_UTR	31231440	31231440	.	+	.	Parent=Os04t0615600-01
Chr04	irgsp1_rep	CDS	31231441	31231968	.	+	0	Parent=Os04t0615600-01
Chr04	irgsp1_rep	three_prime_UTR	31231969	31232057	.	+	.	Parent=Os04t0615600-01
Chr04	irgsp1_rep	mRNA	31239185	31243430	.	+	.	ID=Os04t0615700-01;Name=Os04t0615700-01;Locus_id=Os04g0615700;RAP-DB Gene Symbol Synonym(s)=OsAGO2;RAP-DB Gene Name Synonym(s)=ARGONAUTE 2;CGSNL Gene Symbol=AGO2;CGSNL Gene Name=ARGONAUTE 2;Oryzabase Gene Symbol Synonym(s)=OsAGO2;Oryzabase Gene Name Synonym(s)=sativa Argonaute 2%2C Protein argonaute 2;Note=ARGONAUTE (AGO) family protein%2C Regulation of anther development;Transcript_evidence=AK120766;ORF_evidence=Q7XTS4;GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515);InterPro=PAZ domain superfamily (IPR036085),Ribonuclease H-like superfamily (IPR012337),Ribonuclease H superfamily (IPR036397),Protein argonaute%2C N-terminal (IPR032474),Argonaute%2C linker 1 domain (IPR014811),PAZ domain (IPR003100),Argonaute linker 2 domain (IPR032472),Piwi domain (IPR003165);NIAS_FLcDNA=J023007L18;Manual Curation=April 8%2C 2019;Literature_PMID=30902896;Oryzabase=8272;Expression=AK120766;TENOR=Os04t0615700-01;KEGG=Os04t0615700-01;Subcellular location=cytoplasm (GO:0005737), nucleus (GO:0005634)
Chr04	irgsp1_rep	five_prime_UTR	31239185	31239283	.	+	.	Parent=Os04t0615700-01
Chr04	irgsp1_rep	CDS	31239284	31239776	.	+	0	Parent=Os04t0615700-01
Chr04	irgsp1_rep	CDS	31240097	31241246	.	+	2	Parent=Os04t0615700-01
Chr04	irgsp1_rep	CDS	31241698	31243159	.	+	1	Parent=Os04t0615700-01
Chr04	irgsp1_rep	three_prime_UTR	31243160	31243430	.	+	.	Parent=Os04t0615700-01
Chr04	irgsp1_rep	mRNA	31247863	31249612	.	+	.	ID=Os04t0615800-01;Name=Os04t0615800-01;Locus_id=Os04g0615800;CGSNL Gene Symbol=AGO3;CGSNL Gene Name=ARGONAUTE 3;Oryzabase Gene Symbol Synonym(s)=OsAGO3;Oryzabase Gene Name Synonym(s)=Protein argonaute 3;Note=Similar to H0525G02.5 protein.;Transcript_evidence=AK107521 (DDBJ%2C Best hit);ORF_evidence=Q00RR5 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515);InterPro=Stem cell self-renewal protein Piwi (IPR003165),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=002-129-F09;Oryzabase=8273;TENOR=Os04t0615800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31247863	31247864	.	+	.	Parent=Os04t0615800-01
Chr04	irgsp1_rep	CDS	31247865	31249436	.	+	0	Parent=Os04t0615800-01
Chr04	irgsp1_rep	three_prime_UTR	31249437	31249612	.	+	.	Parent=Os04t0615800-01
Chr04	irgsp1_rep	mRNA	31250103	31254033	.	+	.	ID=Os04t0615850-00;Name=Os04t0615850-00;Locus_id=Os04g0615850;Note=Hypothetical protein.;Transcript_evidence=tplb0046o20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0615850-00
Chr04	irgsp1_rep	five_prime_UTR	31250103	31250663	.	+	.	Parent=Os04t0615850-00
Chr04	irgsp1_rep	five_prime_UTR	31250759	31250835	.	+	.	Parent=Os04t0615850-00
Chr04	irgsp1_rep	five_prime_UTR	31250973	31252930	.	+	.	Parent=Os04t0615850-00
Chr04	irgsp1_rep	CDS	31252931	31252988	.	+	0	Parent=Os04t0615850-00
Chr04	irgsp1_rep	CDS	31253378	31253479	.	+	2	Parent=Os04t0615850-00
Chr04	irgsp1_rep	CDS	31253603	31253952	.	+	2	Parent=Os04t0615850-00
Chr04	irgsp1_rep	three_prime_UTR	31253953	31254033	.	+	.	Parent=Os04t0615850-00
Chr04	irgsp1_rep	mRNA	31251438	31254040	.	-	.	ID=Os04t0615900-01;Name=Os04t0615900-01;Locus_id=Os04g0615900;Note=FAR1 domain containing protein.;Transcript_evidence=AK072027 (DDBJ%2C Best hit);ORF_evidence=Q00RR4 (UniProt);InterPro=FAR1 DNA binding domain (IPR004330),MULE transposase domain (IPR018289);NIAS_FLcDNA=J013106I23;TENOR=Os04t0615900-01
Chr04	irgsp1_rep	five_prime_UTR	31254016	31254040	.	-	.	Parent=Os04t0615900-01
Chr04	irgsp1_rep	CDS	31253605	31254015	.	-	0	Parent=Os04t0615900-01
Chr04	irgsp1_rep	CDS	31253404	31253481	.	-	0	Parent=Os04t0615900-01
Chr04	irgsp1_rep	CDS	31251438	31253001	.	-	0	Parent=Os04t0615900-01
Chr04	irgsp1_rep	mRNA	31254843	31257934	.	-	.	ID=Os04t0616000-01;Name=Os04t0616000-01;Locus_id=Os04g0616000;Note=Similar to H0525G02.7 protein.;Transcript_evidence=AK106295 (DDBJ%2C Best hit);ORF_evidence=Q00RR3 (UniProt);NIAS_FLcDNA=002-101-B10;Expression=AK106295;TENOR=Os04t0616000-01;KEGG=Os04t0616000-01
Chr04	irgsp1_rep	five_prime_UTR	31257782	31257934	.	-	.	Parent=Os04t0616000-01
Chr04	irgsp1_rep	CDS	31257518	31257781	.	-	0	Parent=Os04t0616000-01
Chr04	irgsp1_rep	CDS	31257355	31257423	.	-	0	Parent=Os04t0616000-01
Chr04	irgsp1_rep	CDS	31256563	31256616	.	-	0	Parent=Os04t0616000-01
Chr04	irgsp1_rep	CDS	31256383	31256458	.	-	0	Parent=Os04t0616000-01
Chr04	irgsp1_rep	CDS	31256211	31256279	.	-	2	Parent=Os04t0616000-01
Chr04	irgsp1_rep	CDS	31255927	31256118	.	-	2	Parent=Os04t0616000-01
Chr04	irgsp1_rep	CDS	31255797	31255839	.	-	2	Parent=Os04t0616000-01
Chr04	irgsp1_rep	CDS	31255640	31255718	.	-	1	Parent=Os04t0616000-01
Chr04	irgsp1_rep	CDS	31255446	31255538	.	-	0	Parent=Os04t0616000-01
Chr04	irgsp1_rep	three_prime_UTR	31255400	31255445	.	-	.	Parent=Os04t0616000-01
Chr04	irgsp1_rep	three_prime_UTR	31254843	31255306	.	-	.	Parent=Os04t0616000-01
Chr04	irgsp1_rep	mRNA	31255397	31257910	.	+	.	ID=Os04t0616050-00;Name=Os04t0616050-00;Locus_id=Os04g0616050;Note=Hypothetical gene.;Transcript_evidence=BT019259 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0616050-00;KEGG=Os04t0616050-00
Chr04	irgsp1_rep	five_prime_UTR	31255397	31255537	.	+	.	Parent=Os04t0616050-00
Chr04	irgsp1_rep	five_prime_UTR	31255639	31255739	.	+	.	Parent=Os04t0616050-00
Chr04	irgsp1_rep	five_prime_UTR	31255909	31256286	.	+	.	Parent=Os04t0616050-00
Chr04	irgsp1_rep	five_prime_UTR	31256392	31256416	.	+	.	Parent=Os04t0616050-00
Chr04	irgsp1_rep	five_prime_UTR	31257264	31257305	.	+	.	Parent=Os04t0616050-00
Chr04	irgsp1_rep	CDS	31257306	31257422	.	+	0	Parent=Os04t0616050-00
Chr04	irgsp1_rep	CDS	31257517	31257672	.	+	0	Parent=Os04t0616050-00
Chr04	irgsp1_rep	three_prime_UTR	31257673	31257910	.	+	.	Parent=Os04t0616050-00
Chr04	irgsp1_rep	mRNA	31260001	31262246	.	-	.	ID=Os04t0616100-00;Name=Os04t0616100-00;Locus_id=Os04g0616100;Note=Similar to H0525G02.8 protein.;Transcript_evidence=CT835037 (DDBJ%2C Best hit);ORF_evidence=Q00RR2 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026);TENOR=Os04t0616100-00;KEGG=Os04t0616100-00
Chr04	irgsp1_rep	five_prime_UTR	31261394	31262246	.	-	.	Parent=Os04t0616100-00
Chr04	irgsp1_rep	CDS	31261205	31261393	.	-	0	Parent=Os04t0616100-00
Chr04	irgsp1_rep	CDS	31260483	31260938	.	-	0	Parent=Os04t0616100-00
Chr04	irgsp1_rep	three_prime_UTR	31260261	31260482	.	-	.	Parent=Os04t0616100-00
Chr04	irgsp1_rep	three_prime_UTR	31260001	31260176	.	-	.	Parent=Os04t0616100-00
Chr04	irgsp1_rep	mRNA	31263110	31264993	.	-	.	ID=Os04t0616200-01;Name=Os04t0616200-01;Locus_id=Os04g0616200;CGSNL Gene Symbol=RLCK159;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 159;Oryzabase Gene Symbol Synonym(s)=OsRLCK159;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 159;Note=Similar to H0525G02.9 protein.;Transcript_evidence=AK111453 (DDBJ%2C Best hit);ORF_evidence=Q00RR1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=002-183-C01;Oryzabase=18862;TENOR=Os04t0616200-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31264992	31264993	.	-	.	Parent=Os04t0616200-01
Chr04	irgsp1_rep	CDS	31264781	31264991	.	-	0	Parent=Os04t0616200-01
Chr04	irgsp1_rep	CDS	31264470	31264701	.	-	2	Parent=Os04t0616200-01
Chr04	irgsp1_rep	CDS	31264231	31264381	.	-	1	Parent=Os04t0616200-01
Chr04	irgsp1_rep	CDS	31263709	31264101	.	-	0	Parent=Os04t0616200-01
Chr04	irgsp1_rep	three_prime_UTR	31263110	31263708	.	-	.	Parent=Os04t0616200-01
Chr04	irgsp1_rep	mRNA	31263733	31264216	.	+	.	ID=Os04t0616250-01;Name=Os04t0616250-01;Locus_id=Os04g0616250;Note=Hypothetical gene.;Transcript_evidence=AK242484 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J080305D10;TENOR=Os04t0616250-01;KEGG=Os04t0616250-01
Chr04	irgsp1_rep	CDS	31263733	31264113	.	+	0	Parent=Os04t0616250-01
Chr04	irgsp1_rep	three_prime_UTR	31264114	31264216	.	+	.	Parent=Os04t0616250-01
Chr04	irgsp1_rep	mRNA	31264228	31264688	.	+	.	ID=Os04t0616266-00;Name=Os04t0616266-00;Locus_id=Os04g0616266;Note=Non-protein coding transcript.;Transcript_evidence=EU949024 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0616266-00
Chr04	irgsp1_rep	exon	31264228	31264688	.	+	.	Parent=Os04t0616266-00
Chr04	irgsp1_rep	mRNA	31270141	31270896	.	-	.	ID=Os04t0616282-00;Name=Os04t0616282-00;Locus_id=Os04g0616282;CGSNL Gene Symbol=RLCK159;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 159;Oryzabase Gene Symbol Synonym(s)=OsRLCK159;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 159;Note=Similar to H0525G02.9 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q00RR1 (UniProt);Oryzabase=18862;TENOR=Os04t0616282-00
Chr04	irgsp1_rep	CDS	31270767	31270896	.	-	0	Parent=Os04t0616282-00
Chr04	irgsp1_rep	CDS	31270456	31270642	.	-	2	Parent=Os04t0616282-00
Chr04	irgsp1_rep	CDS	31270141	31270216	.	-	1	Parent=Os04t0616282-00
Chr04	irgsp1_rep	mRNA	31274513	31282357	.	-	.	ID=Os04t0616300-01;Name=Os04t0616300-01;Locus_id=Os04g0616300;Note=Similar to H0525G02.10 protein.;Transcript_evidence=AK241824 (DDBJ%2C Best hit);ORF_evidence=Q00RR0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Malectin (IPR021720);NIAS_FLcDNA=J065212H01;TENOR=Os04t0616300-01;KEGG=Os04t0616300-01
Chr04	irgsp1_rep	five_prime_UTR	31282284	31282357	.	-	.	Parent=Os04t0616300-01
Chr04	irgsp1_rep	CDS	31282175	31282283	.	-	0	Parent=Os04t0616300-01
Chr04	irgsp1_rep	CDS	31281360	31281555	.	-	2	Parent=Os04t0616300-01
Chr04	irgsp1_rep	CDS	31281172	31281243	.	-	1	Parent=Os04t0616300-01
Chr04	irgsp1_rep	CDS	31280678	31280749	.	-	1	Parent=Os04t0616300-01
Chr04	irgsp1_rep	CDS	31280522	31280593	.	-	1	Parent=Os04t0616300-01
Chr04	irgsp1_rep	CDS	31280076	31280147	.	-	1	Parent=Os04t0616300-01
Chr04	irgsp1_rep	CDS	31279894	31279965	.	-	1	Parent=Os04t0616300-01
Chr04	irgsp1_rep	CDS	31279740	31279808	.	-	1	Parent=Os04t0616300-01
Chr04	irgsp1_rep	CDS	31279103	31279174	.	-	1	Parent=Os04t0616300-01
Chr04	irgsp1_rep	CDS	31278939	31279013	.	-	1	Parent=Os04t0616300-01
Chr04	irgsp1_rep	CDS	31278748	31278822	.	-	1	Parent=Os04t0616300-01
Chr04	irgsp1_rep	CDS	31278562	31278633	.	-	1	Parent=Os04t0616300-01
Chr04	irgsp1_rep	CDS	31278405	31278470	.	-	1	Parent=Os04t0616300-01
Chr04	irgsp1_rep	CDS	31278247	31278312	.	-	1	Parent=Os04t0616300-01
Chr04	irgsp1_rep	CDS	31277816	31277860	.	-	1	Parent=Os04t0616300-01
Chr04	irgsp1_rep	CDS	31277650	31277714	.	-	1	Parent=Os04t0616300-01
Chr04	irgsp1_rep	CDS	31277156	31277535	.	-	2	Parent=Os04t0616300-01
Chr04	irgsp1_rep	CDS	31276870	31277071	.	-	0	Parent=Os04t0616300-01
Chr04	irgsp1_rep	CDS	31276588	31276752	.	-	2	Parent=Os04t0616300-01
Chr04	irgsp1_rep	CDS	31276385	31276503	.	-	2	Parent=Os04t0616300-01
Chr04	irgsp1_rep	CDS	31275935	31276145	.	-	0	Parent=Os04t0616300-01
Chr04	irgsp1_rep	CDS	31275613	31275844	.	-	2	Parent=Os04t0616300-01
Chr04	irgsp1_rep	CDS	31275382	31275532	.	-	1	Parent=Os04t0616300-01
Chr04	irgsp1_rep	CDS	31274785	31275132	.	-	0	Parent=Os04t0616300-01
Chr04	irgsp1_rep	three_prime_UTR	31274513	31274784	.	-	.	Parent=Os04t0616300-01
Chr04	irgsp1_rep	mRNA	31275367	31275831	.	+	.	ID=Os04t0616350-00;Name=Os04t0616350-00;Locus_id=Os04g0616350;Note=Non-protein coding transcript.;Transcript_evidence=EU949024 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0616350-00
Chr04	irgsp1_rep	exon	31275367	31275831	.	+	.	Parent=Os04t0616350-00
Chr04	irgsp1_rep	mRNA	31285630	31295976	.	-	.	ID=Os04t0616400-01;Name=Os04t0616400-01;Locus_id=Os04g0616400;Note=Similar to H0525G02.12 protein.;Transcript_evidence=AK101634 (DDBJ%2C Best hit);ORF_evidence=Q25AF1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Malectin (IPR021720);NIAS_FLcDNA=J033055A08;TENOR=Os04t0616400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31295976	31295976	.	-	.	Parent=Os04t0616400-01
Chr04	irgsp1_rep	CDS	31295797	31295975	.	-	0	Parent=Os04t0616400-01
Chr04	irgsp1_rep	CDS	31295491	31295562	.	-	1	Parent=Os04t0616400-01
Chr04	irgsp1_rep	CDS	31294663	31294734	.	-	1	Parent=Os04t0616400-01
Chr04	irgsp1_rep	CDS	31294506	31294577	.	-	1	Parent=Os04t0616400-01
Chr04	irgsp1_rep	CDS	31294093	31294164	.	-	1	Parent=Os04t0616400-01
Chr04	irgsp1_rep	CDS	31293914	31293985	.	-	1	Parent=Os04t0616400-01
Chr04	irgsp1_rep	CDS	31293764	31293832	.	-	1	Parent=Os04t0616400-01
Chr04	irgsp1_rep	CDS	31293196	31293267	.	-	1	Parent=Os04t0616400-01
Chr04	irgsp1_rep	CDS	31293025	31293099	.	-	1	Parent=Os04t0616400-01
Chr04	irgsp1_rep	CDS	31292842	31292916	.	-	1	Parent=Os04t0616400-01
Chr04	irgsp1_rep	CDS	31292651	31292722	.	-	1	Parent=Os04t0616400-01
Chr04	irgsp1_rep	CDS	31292495	31292560	.	-	1	Parent=Os04t0616400-01
Chr04	irgsp1_rep	CDS	31292345	31292410	.	-	1	Parent=Os04t0616400-01
Chr04	irgsp1_rep	CDS	31289183	31289227	.	-	1	Parent=Os04t0616400-01
Chr04	irgsp1_rep	CDS	31289018	31289088	.	-	1	Parent=Os04t0616400-01
Chr04	irgsp1_rep	CDS	31288537	31288913	.	-	2	Parent=Os04t0616400-01
Chr04	irgsp1_rep	CDS	31288176	31288445	.	-	0	Parent=Os04t0616400-01
Chr04	irgsp1_rep	three_prime_UTR	31287727	31288175	.	-	.	Parent=Os04t0616400-01
Chr04	irgsp1_rep	three_prime_UTR	31287202	31287412	.	-	.	Parent=Os04t0616400-01
Chr04	irgsp1_rep	three_prime_UTR	31286876	31287107	.	-	.	Parent=Os04t0616400-01
Chr04	irgsp1_rep	three_prime_UTR	31286637	31286787	.	-	.	Parent=Os04t0616400-01
Chr04	irgsp1_rep	three_prime_UTR	31285630	31286166	.	-	.	Parent=Os04t0616400-01
Chr04	irgsp1_rep	mRNA	31285363	31290889	.	-	.	ID=Os04t0616400-02;Name=Os04t0616400-02;Locus_id=Os04g0616400;Note=Similar to H0525G02.11 protein.;Transcript_evidence=AK099657 (DDBJ%2C Best hit);ORF_evidence=Q00RQ9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635),Malectin (IPR021720);NIAS_FLcDNA=J013066C21;Expression=AK099657;TENOR=Os04t0616400-02;KEGG=Os04t0616400-02
Chr04	irgsp1_rep	five_prime_UTR	31289254	31290889	.	-	.	Parent=Os04t0616400-02
Chr04	irgsp1_rep	CDS	31289183	31289253	.	-	0	Parent=Os04t0616400-02
Chr04	irgsp1_rep	CDS	31289018	31289088	.	-	1	Parent=Os04t0616400-02
Chr04	irgsp1_rep	CDS	31288537	31288913	.	-	2	Parent=Os04t0616400-02
Chr04	irgsp1_rep	CDS	31288244	31288445	.	-	0	Parent=Os04t0616400-02
Chr04	irgsp1_rep	CDS	31287916	31288113	.	-	2	Parent=Os04t0616400-02
Chr04	irgsp1_rep	CDS	31287727	31287845	.	-	2	Parent=Os04t0616400-02
Chr04	irgsp1_rep	CDS	31287202	31287412	.	-	0	Parent=Os04t0616400-02
Chr04	irgsp1_rep	CDS	31286876	31287107	.	-	2	Parent=Os04t0616400-02
Chr04	irgsp1_rep	CDS	31286637	31286787	.	-	1	Parent=Os04t0616400-02
Chr04	irgsp1_rep	CDS	31285828	31286166	.	-	0	Parent=Os04t0616400-02
Chr04	irgsp1_rep	three_prime_UTR	31285363	31285827	.	-	.	Parent=Os04t0616400-02
Chr04	irgsp1_rep	mRNA	31286615	31287094	.	+	.	ID=Os04t0616450-00;Name=Os04t0616450-00;Locus_id=Os04g0616450;Note=Non-protein coding transcript.;Transcript_evidence=EU949024 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0616450-00
Chr04	irgsp1_rep	exon	31286615	31287094	.	+	.	Parent=Os04t0616450-00
Chr04	irgsp1_rep	mRNA	31299841	31307729	.	-	.	ID=Os04t0616500-01;Name=Os04t0616500-01;Locus_id=Os04g0616500;Note=Similar to H0525G02.11 protein.;Transcript_evidence=AK242570 (DDBJ%2C Best hit);ORF_evidence=Q00RQ9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635),Malectin (IPR021720);NIAS_FLcDNA=J090006N21;TENOR=Os04t0616500-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31307668	31307729	.	-	.	Parent=Os04t0616500-01
Chr04	irgsp1_rep	CDS	31307553	31307667	.	-	0	Parent=Os04t0616500-01
Chr04	irgsp1_rep	CDS	31306724	31306907	.	-	2	Parent=Os04t0616500-01
Chr04	irgsp1_rep	CDS	31306553	31306624	.	-	1	Parent=Os04t0616500-01
Chr04	irgsp1_rep	CDS	31306026	31306097	.	-	1	Parent=Os04t0616500-01
Chr04	irgsp1_rep	CDS	31305870	31305941	.	-	1	Parent=Os04t0616500-01
Chr04	irgsp1_rep	CDS	31305404	31305475	.	-	1	Parent=Os04t0616500-01
Chr04	irgsp1_rep	CDS	31305229	31305300	.	-	1	Parent=Os04t0616500-01
Chr04	irgsp1_rep	CDS	31305073	31305141	.	-	1	Parent=Os04t0616500-01
Chr04	irgsp1_rep	CDS	31304312	31304383	.	-	1	Parent=Os04t0616500-01
Chr04	irgsp1_rep	CDS	31304149	31304223	.	-	1	Parent=Os04t0616500-01
Chr04	irgsp1_rep	CDS	31303962	31304036	.	-	1	Parent=Os04t0616500-01
Chr04	irgsp1_rep	CDS	31303761	31303832	.	-	1	Parent=Os04t0616500-01
Chr04	irgsp1_rep	CDS	31303595	31303660	.	-	1	Parent=Os04t0616500-01
Chr04	irgsp1_rep	CDS	31303441	31303506	.	-	1	Parent=Os04t0616500-01
Chr04	irgsp1_rep	CDS	31303037	31303081	.	-	1	Parent=Os04t0616500-01
Chr04	irgsp1_rep	CDS	31302871	31302935	.	-	1	Parent=Os04t0616500-01
Chr04	irgsp1_rep	CDS	31302376	31302755	.	-	2	Parent=Os04t0616500-01
Chr04	irgsp1_rep	CDS	31302079	31302280	.	-	0	Parent=Os04t0616500-01
Chr04	irgsp1_rep	CDS	31301799	31301963	.	-	2	Parent=Os04t0616500-01
Chr04	irgsp1_rep	CDS	31301596	31301714	.	-	2	Parent=Os04t0616500-01
Chr04	irgsp1_rep	CDS	31301080	31301290	.	-	0	Parent=Os04t0616500-01
Chr04	irgsp1_rep	CDS	31300757	31300988	.	-	2	Parent=Os04t0616500-01
Chr04	irgsp1_rep	CDS	31300519	31300669	.	-	1	Parent=Os04t0616500-01
Chr04	irgsp1_rep	CDS	31299949	31300299	.	-	0	Parent=Os04t0616500-01
Chr04	irgsp1_rep	three_prime_UTR	31299841	31299948	.	-	.	Parent=Os04t0616500-01
Chr04	irgsp1_rep	mRNA	31300516	31300999	.	+	.	ID=Os04t0616550-00;Name=Os04t0616550-00;Locus_id=Os04g0616550;Note=Non-protein coding transcript.;Transcript_evidence=EU949024 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0616550-00
Chr04	irgsp1_rep	exon	31300516	31300999	.	+	.	Parent=Os04t0616550-00
Chr04	irgsp1_rep	mRNA	31308749	31310236	.	-	.	ID=Os04t0616600-01;Name=Os04t0616600-01;Locus_id=Os04g0616600;Oryzabase Gene Name Synonym(s)=Leucine-rich repeat-containing protein kinase family protein;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK064641 (DDBJ%2C Best hit);ORF_evidence=Q25AF1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-114-B05;Oryzabase=16793;TENOR=Os04t0616600-01;KEGG=Os04t0616600-01
Chr04	irgsp1_rep	five_prime_UTR	31310234	31310236	.	-	.	Parent=Os04t0616600-01
Chr04	irgsp1_rep	CDS	31310152	31310233	.	-	0	Parent=Os04t0616600-01
Chr04	irgsp1_rep	CDS	31309824	31310055	.	-	2	Parent=Os04t0616600-01
Chr04	irgsp1_rep	CDS	31309587	31309737	.	-	1	Parent=Os04t0616600-01
Chr04	irgsp1_rep	CDS	31309013	31309351	.	-	0	Parent=Os04t0616600-01
Chr04	irgsp1_rep	three_prime_UTR	31308749	31309012	.	-	.	Parent=Os04t0616600-01
Chr04	irgsp1_rep	mRNA	31309584	31310066	.	+	.	ID=Os04t0616650-00;Name=Os04t0616650-00;Locus_id=Os04g0616650;Note=Non-protein coding transcript.;Transcript_evidence=EU949024 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0616650-00
Chr04	irgsp1_rep	exon	31309584	31310066	.	+	.	Parent=Os04t0616650-00
Chr04	irgsp1_rep	mRNA	31318572	31328040	.	-	.	ID=Os04t0616700-01;Name=Os04t0616700-01;Locus_id=Os04g0616700;Note=Hypothetical conserved gene.;Transcript_evidence=AK111539 (DDBJ%2C Best hit);ORF_evidence=Q7XTP2 (UniProt);NIAS_FLcDNA=J013039F20;TENOR=Os04t0616700-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31327870	31328040	.	-	.	Parent=Os04t0616700-01
Chr04	irgsp1_rep	CDS	31327785	31327869	.	-	0	Parent=Os04t0616700-01
Chr04	irgsp1_rep	CDS	31327131	31327308	.	-	2	Parent=Os04t0616700-01
Chr04	irgsp1_rep	CDS	31326808	31326958	.	-	1	Parent=Os04t0616700-01
Chr04	irgsp1_rep	three_prime_UTR	31326360	31326807	.	-	.	Parent=Os04t0616700-01
Chr04	irgsp1_rep	three_prime_UTR	31326204	31326275	.	-	.	Parent=Os04t0616700-01
Chr04	irgsp1_rep	three_prime_UTR	31325736	31325807	.	-	.	Parent=Os04t0616700-01
Chr04	irgsp1_rep	three_prime_UTR	31325554	31325625	.	-	.	Parent=Os04t0616700-01
Chr04	irgsp1_rep	three_prime_UTR	31325396	31325464	.	-	.	Parent=Os04t0616700-01
Chr04	irgsp1_rep	three_prime_UTR	31324859	31324930	.	-	.	Parent=Os04t0616700-01
Chr04	irgsp1_rep	three_prime_UTR	31324688	31324762	.	-	.	Parent=Os04t0616700-01
Chr04	irgsp1_rep	three_prime_UTR	31324505	31324579	.	-	.	Parent=Os04t0616700-01
Chr04	irgsp1_rep	three_prime_UTR	31324313	31324384	.	-	.	Parent=Os04t0616700-01
Chr04	irgsp1_rep	three_prime_UTR	31324156	31324221	.	-	.	Parent=Os04t0616700-01
Chr04	irgsp1_rep	three_prime_UTR	31324003	31324068	.	-	.	Parent=Os04t0616700-01
Chr04	irgsp1_rep	three_prime_UTR	31323371	31323415	.	-	.	Parent=Os04t0616700-01
Chr04	irgsp1_rep	three_prime_UTR	31323205	31323269	.	-	.	Parent=Os04t0616700-01
Chr04	irgsp1_rep	three_prime_UTR	31322714	31323093	.	-	.	Parent=Os04t0616700-01
Chr04	irgsp1_rep	three_prime_UTR	31322361	31322559	.	-	.	Parent=Os04t0616700-01
Chr04	irgsp1_rep	three_prime_UTR	31322072	31322236	.	-	.	Parent=Os04t0616700-01
Chr04	irgsp1_rep	three_prime_UTR	31321869	31321987	.	-	.	Parent=Os04t0616700-01
Chr04	irgsp1_rep	three_prime_UTR	31320980	31321190	.	-	.	Parent=Os04t0616700-01
Chr04	irgsp1_rep	three_prime_UTR	31320659	31320890	.	-	.	Parent=Os04t0616700-01
Chr04	irgsp1_rep	three_prime_UTR	31320195	31320345	.	-	.	Parent=Os04t0616700-01
Chr04	irgsp1_rep	three_prime_UTR	31318572	31319176	.	-	.	Parent=Os04t0616700-01
Chr04	irgsp1_rep	mRNA	31320074	31328040	.	-	.	ID=Os04t0616700-02;Name=Os04t0616700-02;Locus_id=Os04g0616700;Note=Hypothetical conserved gene.;Transcript_evidence=AK111673 (DDBJ%2C Best hit);ORF_evidence=Q7XTP2 (UniProt);NIAS_FLcDNA=J013154C14;TENOR=Os04t0616700-02;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31327870	31328040	.	-	.	Parent=Os04t0616700-02
Chr04	irgsp1_rep	CDS	31327785	31327869	.	-	0	Parent=Os04t0616700-02
Chr04	irgsp1_rep	CDS	31327127	31327308	.	-	2	Parent=Os04t0616700-02
Chr04	irgsp1_rep	three_prime_UTR	31326360	31327126	.	-	.	Parent=Os04t0616700-02
Chr04	irgsp1_rep	three_prime_UTR	31326204	31326275	.	-	.	Parent=Os04t0616700-02
Chr04	irgsp1_rep	three_prime_UTR	31325736	31325807	.	-	.	Parent=Os04t0616700-02
Chr04	irgsp1_rep	three_prime_UTR	31325554	31325625	.	-	.	Parent=Os04t0616700-02
Chr04	irgsp1_rep	three_prime_UTR	31325396	31325464	.	-	.	Parent=Os04t0616700-02
Chr04	irgsp1_rep	three_prime_UTR	31324859	31324930	.	-	.	Parent=Os04t0616700-02
Chr04	irgsp1_rep	three_prime_UTR	31324505	31324762	.	-	.	Parent=Os04t0616700-02
Chr04	irgsp1_rep	three_prime_UTR	31324313	31324384	.	-	.	Parent=Os04t0616700-02
Chr04	irgsp1_rep	three_prime_UTR	31324156	31324221	.	-	.	Parent=Os04t0616700-02
Chr04	irgsp1_rep	three_prime_UTR	31324003	31324068	.	-	.	Parent=Os04t0616700-02
Chr04	irgsp1_rep	three_prime_UTR	31323371	31323415	.	-	.	Parent=Os04t0616700-02
Chr04	irgsp1_rep	three_prime_UTR	31323205	31323269	.	-	.	Parent=Os04t0616700-02
Chr04	irgsp1_rep	three_prime_UTR	31322714	31323093	.	-	.	Parent=Os04t0616700-02
Chr04	irgsp1_rep	three_prime_UTR	31322361	31322559	.	-	.	Parent=Os04t0616700-02
Chr04	irgsp1_rep	three_prime_UTR	31322072	31322236	.	-	.	Parent=Os04t0616700-02
Chr04	irgsp1_rep	three_prime_UTR	31321869	31321987	.	-	.	Parent=Os04t0616700-02
Chr04	irgsp1_rep	three_prime_UTR	31320980	31321190	.	-	.	Parent=Os04t0616700-02
Chr04	irgsp1_rep	three_prime_UTR	31320659	31320890	.	-	.	Parent=Os04t0616700-02
Chr04	irgsp1_rep	three_prime_UTR	31320074	31320345	.	-	.	Parent=Os04t0616700-02
Chr04	irgsp1_rep	mRNA	31317589	31327912	.	-	.	ID=Os04t0616700-03;Name=Os04t0616700-03;Locus_id=Os04g0616700;Note=Similar to H0525G02.12 protein.;Transcript_evidence=AK111529 (DDBJ%2C Best hit);ORF_evidence=Q25AF1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635),Malectin (IPR021720);NIAS_FLcDNA=J013023F07;TENOR=Os04t0616700-03;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31327870	31327912	.	-	.	Parent=Os04t0616700-03
Chr04	irgsp1_rep	CDS	31327785	31327869	.	-	0	Parent=Os04t0616700-03
Chr04	irgsp1_rep	CDS	31327131	31327308	.	-	2	Parent=Os04t0616700-03
Chr04	irgsp1_rep	CDS	31326887	31326958	.	-	1	Parent=Os04t0616700-03
Chr04	irgsp1_rep	CDS	31326360	31326431	.	-	1	Parent=Os04t0616700-03
Chr04	irgsp1_rep	CDS	31326204	31326275	.	-	1	Parent=Os04t0616700-03
Chr04	irgsp1_rep	CDS	31325736	31325807	.	-	1	Parent=Os04t0616700-03
Chr04	irgsp1_rep	CDS	31325554	31325625	.	-	1	Parent=Os04t0616700-03
Chr04	irgsp1_rep	CDS	31325396	31325464	.	-	1	Parent=Os04t0616700-03
Chr04	irgsp1_rep	CDS	31324859	31324930	.	-	1	Parent=Os04t0616700-03
Chr04	irgsp1_rep	CDS	31324688	31324762	.	-	1	Parent=Os04t0616700-03
Chr04	irgsp1_rep	CDS	31324505	31324579	.	-	1	Parent=Os04t0616700-03
Chr04	irgsp1_rep	CDS	31324313	31324384	.	-	1	Parent=Os04t0616700-03
Chr04	irgsp1_rep	CDS	31324156	31324221	.	-	1	Parent=Os04t0616700-03
Chr04	irgsp1_rep	CDS	31324003	31324068	.	-	1	Parent=Os04t0616700-03
Chr04	irgsp1_rep	CDS	31323371	31323415	.	-	1	Parent=Os04t0616700-03
Chr04	irgsp1_rep	CDS	31323205	31323269	.	-	1	Parent=Os04t0616700-03
Chr04	irgsp1_rep	CDS	31322714	31323093	.	-	2	Parent=Os04t0616700-03
Chr04	irgsp1_rep	CDS	31322361	31322559	.	-	0	Parent=Os04t0616700-03
Chr04	irgsp1_rep	CDS	31322072	31322236	.	-	2	Parent=Os04t0616700-03
Chr04	irgsp1_rep	CDS	31321869	31321987	.	-	2	Parent=Os04t0616700-03
Chr04	irgsp1_rep	CDS	31320980	31321190	.	-	0	Parent=Os04t0616700-03
Chr04	irgsp1_rep	CDS	31320659	31320890	.	-	2	Parent=Os04t0616700-03
Chr04	irgsp1_rep	CDS	31320195	31320345	.	-	1	Parent=Os04t0616700-03
Chr04	irgsp1_rep	CDS	31318793	31319176	.	-	0	Parent=Os04t0616700-03
Chr04	irgsp1_rep	three_prime_UTR	31317589	31318792	.	-	.	Parent=Os04t0616700-03
Chr04	irgsp1_rep	mRNA	31318538	31321192	.	-	.	ID=Os04t0616700-04;Name=Os04t0616700-04;Locus_id=Os04g0616700;Note=Similar to H0525G02.12 protein.;Transcript_evidence=AK112032 (DDBJ%2C Best hit);ORF_evidence=Q25AF1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-040-B01;TENOR=Os04t0616700-04;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31321191	31321192	.	-	.	Parent=Os04t0616700-04
Chr04	irgsp1_rep	CDS	31320980	31321190	.	-	0	Parent=Os04t0616700-04
Chr04	irgsp1_rep	CDS	31320659	31320890	.	-	2	Parent=Os04t0616700-04
Chr04	irgsp1_rep	CDS	31320195	31320345	.	-	1	Parent=Os04t0616700-04
Chr04	irgsp1_rep	CDS	31318793	31319176	.	-	0	Parent=Os04t0616700-04
Chr04	irgsp1_rep	three_prime_UTR	31318538	31318792	.	-	.	Parent=Os04t0616700-04
Chr04	irgsp1_rep	mRNA	31320192	31320867	.	+	.	ID=Os04t0616750-00;Name=Os04t0616750-00;Locus_id=Os04g0616750;Note=Non-protein coding transcript.;Transcript_evidence=EU949024 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0616750-00
Chr04	irgsp1_rep	exon	31320192	31320381	.	+	.	Parent=Os04t0616750-00
Chr04	irgsp1_rep	exon	31320615	31320867	.	+	.	Parent=Os04t0616750-00
Chr04	irgsp1_rep	mRNA	31329731	31331334	.	+	.	ID=Os04t0616800-00;Name=Os04t0616800-00;Locus_id=Os04g0616800;Note=Similar to H0525G02.13 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q25AF0 (UniProt);TENOR=Os04t0616800-00;KEGG=Os04t0616800-00
Chr04	irgsp1_rep	CDS	31329731	31329866	.	+	0	Parent=Os04t0616800-00
Chr04	irgsp1_rep	CDS	31330028	31330206	.	+	2	Parent=Os04t0616800-00
Chr04	irgsp1_rep	CDS	31330324	31330497	.	+	0	Parent=Os04t0616800-00
Chr04	irgsp1_rep	CDS	31330653	31330811	.	+	0	Parent=Os04t0616800-00
Chr04	irgsp1_rep	CDS	31330924	31331081	.	+	0	Parent=Os04t0616800-00
Chr04	irgsp1_rep	CDS	31331202	31331334	.	+	1	Parent=Os04t0616800-00
Chr04	irgsp1_rep	mRNA	31340285	31344722	.	+	.	ID=Os04t0616900-01;Name=Os04t0616900-01;Locus_id=Os04g0616900;Note=Similar to H0525G02.14 protein.;Transcript_evidence=AK066343 (DDBJ%2C Best hit),AK104906 (DDBJ%2C Best hit);ORF_evidence=Q25AE9 (UniProt);NIAS_FLcDNA=J013066L21,001-046-G10;TENOR=Os04t0616900-01
Chr04	irgsp1_rep	five_prime_UTR	31340285	31340317	.	+	.	Parent=Os04t0616900-01
Chr04	irgsp1_rep	CDS	31340318	31340481	.	+	0	Parent=Os04t0616900-01
Chr04	irgsp1_rep	CDS	31340573	31340890	.	+	1	Parent=Os04t0616900-01
Chr04	irgsp1_rep	CDS	31341425	31341571	.	+	1	Parent=Os04t0616900-01
Chr04	irgsp1_rep	CDS	31341752	31341832	.	+	1	Parent=Os04t0616900-01
Chr04	irgsp1_rep	CDS	31341924	31341964	.	+	1	Parent=Os04t0616900-01
Chr04	irgsp1_rep	CDS	31342077	31342118	.	+	2	Parent=Os04t0616900-01
Chr04	irgsp1_rep	CDS	31342192	31342254	.	+	2	Parent=Os04t0616900-01
Chr04	irgsp1_rep	CDS	31342873	31342944	.	+	2	Parent=Os04t0616900-01
Chr04	irgsp1_rep	CDS	31343417	31343550	.	+	2	Parent=Os04t0616900-01
Chr04	irgsp1_rep	CDS	31343929	31344005	.	+	0	Parent=Os04t0616900-01
Chr04	irgsp1_rep	CDS	31344318	31344369	.	+	1	Parent=Os04t0616900-01
Chr04	irgsp1_rep	three_prime_UTR	31344370	31344722	.	+	.	Parent=Os04t0616900-01
Chr04	irgsp1_rep	mRNA	31349656	31350385	.	-	.	ID=Os04t0617050-01;Name=Os04t0617050-01;Locus_id=Os04g0617050;CGSNL Gene Symbol=SAUR21;CGSNL Gene Name=SMALL AUXIN-UP RNA 21;Oryzabase Gene Symbol Synonym(s)=OsSAUR21;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 21;Note=Similar to H0313F03.1 protein.;Transcript_evidence=AK242829 (DDBJ%2C Best hit);ORF_evidence=Q25AE5 (UniProt);InterPro=Auxin responsive SAUR protein (IPR003676);NIAS_FLcDNA=J090067K01;Oryzabase=9146;TENOR=Os04t0617050-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31350384	31350385	.	-	.	Parent=Os04t0617050-01
Chr04	irgsp1_rep	CDS	31349964	31350383	.	-	0	Parent=Os04t0617050-01
Chr04	irgsp1_rep	three_prime_UTR	31349656	31349963	.	-	.	Parent=Os04t0617050-01
Chr04	irgsp1_rep	mRNA	31353779	31354403	.	-	.	ID=Os04t0617200-01;Name=Os04t0617200-01;Locus_id=Os04g0617200;Note=Conserved hypothetical protein.;Transcript_evidence=AK109196 (DDBJ%2C Best hit);ORF_evidence=Q8H436 (UniProt);NIAS_FLcDNA=002-156-B09;TENOR=Os04t0617200-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31354402	31354403	.	-	.	Parent=Os04t0617200-01
Chr04	irgsp1_rep	CDS	31353952	31354401	.	-	0	Parent=Os04t0617200-01
Chr04	irgsp1_rep	three_prime_UTR	31353779	31353951	.	-	.	Parent=Os04t0617200-01
Chr04	irgsp1_rep	mRNA	31357541	31357847	.	+	.	ID=Os04t0617350-00;Name=Os04t0617350-00;Locus_id=Os04g0617350;Note=Similar to H0313F03.3 protein.;Transcript_evidence=AK358432 (DDBJ);ORF_evidence=Q25AE7 (UniProt);InterPro=Auxin responsive SAUR protein (IPR003676);TENOR=Os04t0617350-00
Chr04	irgsp1_rep	five_prime_UTR	31357541	31357556	.	+	.	Parent=Os04t0617350-00
Chr04	irgsp1_rep	CDS	31357557	31357847	.	+	0	Parent=Os04t0617350-00
Chr04	irgsp1_rep	mRNA	31361030	31361512	.	+	.	ID=Os04t0617500-00;Name=Os04t0617500-00;Locus_id=Os04g0617500;Note=Similar to H0313F03.4 protein.;Transcript_evidence=AK376866 (DDBJ);ORF_evidence=Q25AE6 (UniProt);TENOR=Os04t0617500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	31361030	31361512	.	+	0	Parent=Os04t0617500-00
Chr04	irgsp1_rep	mRNA	31364111	31369399	.	-	.	ID=Os04t0617600-01;Name=Os04t0617600-01;Locus_id=Os04g0617600;Note=Similar to Cdc48 cell division control protein 48%2C AAA family.;Transcript_evidence=AK067035 (DDBJ%2C Best hit);ORF_evidence=Q25AE4 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);NIAS_FLcDNA=J013089G04;Expression=AK067035;TENOR=Os04t0617600-01;KEGG=Os04t0617600-01
Chr04	irgsp1_rep	five_prime_UTR	31369372	31369399	.	-	.	Parent=Os04t0617600-01
Chr04	irgsp1_rep	CDS	31369102	31369371	.	-	0	Parent=Os04t0617600-01
Chr04	irgsp1_rep	CDS	31368037	31368681	.	-	0	Parent=Os04t0617600-01
Chr04	irgsp1_rep	CDS	31367656	31367899	.	-	0	Parent=Os04t0617600-01
Chr04	irgsp1_rep	CDS	31367417	31367558	.	-	2	Parent=Os04t0617600-01
Chr04	irgsp1_rep	CDS	31367066	31367249	.	-	1	Parent=Os04t0617600-01
Chr04	irgsp1_rep	CDS	31366782	31366973	.	-	0	Parent=Os04t0617600-01
Chr04	irgsp1_rep	CDS	31366427	31366699	.	-	0	Parent=Os04t0617600-01
Chr04	irgsp1_rep	CDS	31366214	31366285	.	-	0	Parent=Os04t0617600-01
Chr04	irgsp1_rep	CDS	31366024	31366110	.	-	0	Parent=Os04t0617600-01
Chr04	irgsp1_rep	CDS	31365760	31365882	.	-	0	Parent=Os04t0617600-01
Chr04	irgsp1_rep	CDS	31365569	31365679	.	-	0	Parent=Os04t0617600-01
Chr04	irgsp1_rep	CDS	31365416	31365454	.	-	0	Parent=Os04t0617600-01
Chr04	irgsp1_rep	CDS	31365196	31365317	.	-	0	Parent=Os04t0617600-01
Chr04	irgsp1_rep	CDS	31364971	31365115	.	-	1	Parent=Os04t0617600-01
Chr04	irgsp1_rep	CDS	31364807	31364890	.	-	0	Parent=Os04t0617600-01
Chr04	irgsp1_rep	CDS	31364643	31364732	.	-	0	Parent=Os04t0617600-01
Chr04	irgsp1_rep	three_prime_UTR	31364601	31364642	.	-	.	Parent=Os04t0617600-01
Chr04	irgsp1_rep	three_prime_UTR	31364111	31364509	.	-	.	Parent=Os04t0617600-01
Chr04	irgsp1_rep	mRNA	31379330	31379841	.	-	.	ID=Os04t0617700-01;Name=Os04t0617700-01;Locus_id=Os04g0617700;Note=Similar to H0313F03.6 protein.;Transcript_evidence=AK243546 (DDBJ%2C Best hit);ORF_evidence=Q25AE3 (UniProt);NIAS_FLcDNA=J100079D11;TENOR=Os04t0617700-01;KEGG=Os04t0617700-01
Chr04	irgsp1_rep	five_prime_UTR	31379840	31379841	.	-	.	Parent=Os04t0617700-01
Chr04	irgsp1_rep	CDS	31379654	31379839	.	-	0	Parent=Os04t0617700-01
Chr04	irgsp1_rep	three_prime_UTR	31379330	31379653	.	-	.	Parent=Os04t0617700-01
Chr04	irgsp1_rep	mRNA	31389665	31393330	.	+	.	ID=Os04t0617800-01;Name=Os04t0617800-01;Locus_id=Os04g0617800;Oryzabase Gene Symbol Synonym(s)=STS22;Oryzabase Gene Name Synonym(s)=Imidazoleglycerol-phosphate dehydratase;Note=Similar to Imidazoleglycerol-phosphate dehydratase 1 (EC 4.2.1.19) (IGPD 1).;Transcript_evidence=AK073351 (DDBJ%2C Best hit);ORF_evidence=Q25AR2 (UniProt);GO=Biological Process: histidine biosynthetic process (GO:0000105),Molecular Function: imidazoleglycerol-phosphate dehydratase activity (GO:0004424);InterPro=Imidazoleglycerol-phosphate dehydratase (IPR000807),Imidazoleglycerol-phosphate dehydratase%2C conserved site (IPR020565),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=J033025I19;Oryzabase=21631;Expression=AK073351;TENOR=Os04t0617800-01;KEGG=Os04t0617800-01 (EC:4.2.1.19)
Chr04	irgsp1_rep	five_prime_UTR	31389665	31389748	.	+	.	Parent=Os04t0617800-01
Chr04	irgsp1_rep	CDS	31389749	31389956	.	+	0	Parent=Os04t0617800-01
Chr04	irgsp1_rep	CDS	31390148	31390275	.	+	2	Parent=Os04t0617800-01
Chr04	irgsp1_rep	CDS	31391071	31391175	.	+	0	Parent=Os04t0617800-01
Chr04	irgsp1_rep	CDS	31391425	31391517	.	+	0	Parent=Os04t0617800-01
Chr04	irgsp1_rep	CDS	31391979	31392053	.	+	0	Parent=Os04t0617800-01
Chr04	irgsp1_rep	CDS	31392359	31392421	.	+	0	Parent=Os04t0617800-01
Chr04	irgsp1_rep	CDS	31392612	31392721	.	+	0	Parent=Os04t0617800-01
Chr04	irgsp1_rep	CDS	31392885	31392912	.	+	1	Parent=Os04t0617800-01
Chr04	irgsp1_rep	three_prime_UTR	31392913	31393330	.	+	.	Parent=Os04t0617800-01
Chr04	irgsp1_rep	mRNA	31393340	31395182	.	-	.	ID=Os04t0617900-01;Name=Os04t0617900-01;Locus_id=Os04g0617900;CGSNL Gene Symbol=GLP4-1;CGSNL Gene Name=GERMIN-LIKE PROTEIN 4-1;Oryzabase Gene Symbol Synonym(s)=OsGLP4-1;Oryzabase Gene Name Synonym(s)=Germin-like protein 4-1;Note=Similar to germin-like protein subfamily 1 member 11.;Transcript_evidence=AK109057 (DDBJ%2C Best hit);ORF_evidence=NP_001150822.1 (RefSeq);NIAS_FLcDNA=002-154-E11;Oryzabase=19101;TENOR=Os04t0617900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31395096	31395182	.	-	.	Parent=Os04t0617900-01
Chr04	irgsp1_rep	CDS	31394976	31395095	.	-	0	Parent=Os04t0617900-01
Chr04	irgsp1_rep	CDS	31393851	31394102	.	-	0	Parent=Os04t0617900-01
Chr04	irgsp1_rep	three_prime_UTR	31393340	31393850	.	-	.	Parent=Os04t0617900-01
Chr04	irgsp1_rep	mRNA	31398698	31400185	.	+	.	ID=Os04t0618050-01;Name=Os04t0618050-01;Locus_id=Os04g0618050;Note=Pentatricopeptide repeat containing protein.;Transcript_evidence=AK240750 (DDBJ%2C Best hit);ORF_evidence=Q25AR1 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J043040A15;TENOR=Os04t0618050-01;KEGG=Os04t0618050-01
Chr04	irgsp1_rep	five_prime_UTR	31398698	31398805	.	+	.	Parent=Os04t0618050-01
Chr04	irgsp1_rep	CDS	31398806	31399897	.	+	0	Parent=Os04t0618050-01
Chr04	irgsp1_rep	three_prime_UTR	31399898	31400185	.	+	.	Parent=Os04t0618050-01
Chr04	irgsp1_rep	mRNA	31400914	31401532	.	-	.	ID=Os04t0618100-01;Name=Os04t0618100-01;Locus_id=Os04g0618100;Note=Hypothetical gene.;Transcript_evidence=AK109257 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-185-A08;Expression=AK109257;TENOR=Os04t0618100-01;KEGG=Os04t0618100-01
Chr04	irgsp1_rep	five_prime_UTR	31401254	31401532	.	-	.	Parent=Os04t0618100-01
Chr04	irgsp1_rep	CDS	31401017	31401253	.	-	0	Parent=Os04t0618100-01
Chr04	irgsp1_rep	three_prime_UTR	31400914	31401016	.	-	.	Parent=Os04t0618100-01
Chr04	irgsp1_rep	mRNA	31403388	31407100	.	+	.	ID=Os04t0618200-01;Name=Os04t0618200-01;Locus_id=Os04g0618200;Note=Similar to cDNA clone:J013046D23%2C full insert sequence.;Transcript_evidence=AK060820 (DDBJ%2C Best hit);ORF_evidence=B7EBH1 (UniProt);GO=Biological Process: galactose metabolic process (GO:0006012),Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: UDP-glucose 4-epimerase activity (GO:0003978),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),UDP-glucose 4-epimerase (IPR005886),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-034-A10;TENOR=Os04t0618200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31403388	31403482	.	+	.	Parent=Os04t0618200-01
Chr04	irgsp1_rep	five_prime_UTR	31403519	31403664	.	+	.	Parent=Os04t0618200-01
Chr04	irgsp1_rep	five_prime_UTR	31404223	31404224	.	+	.	Parent=Os04t0618200-01
Chr04	irgsp1_rep	CDS	31404225	31404347	.	+	0	Parent=Os04t0618200-01
Chr04	irgsp1_rep	CDS	31404726	31404839	.	+	0	Parent=Os04t0618200-01
Chr04	irgsp1_rep	CDS	31404927	31405034	.	+	0	Parent=Os04t0618200-01
Chr04	irgsp1_rep	CDS	31405138	31405229	.	+	0	Parent=Os04t0618200-01
Chr04	irgsp1_rep	CDS	31405640	31405781	.	+	1	Parent=Os04t0618200-01
Chr04	irgsp1_rep	CDS	31405874	31405968	.	+	0	Parent=Os04t0618200-01
Chr04	irgsp1_rep	CDS	31406041	31406170	.	+	1	Parent=Os04t0618200-01
Chr04	irgsp1_rep	CDS	31406254	31406398	.	+	0	Parent=Os04t0618200-01
Chr04	irgsp1_rep	CDS	31406505	31406731	.	+	2	Parent=Os04t0618200-01
Chr04	irgsp1_rep	three_prime_UTR	31406732	31407100	.	+	.	Parent=Os04t0618200-01
Chr04	irgsp1_rep	mRNA	31403388	31407274	.	+	.	ID=Os04t0618200-02;Name=Os04t0618200-02;Locus_id=Os04g0618200;Note=Similar to H0313F03.11 protein.;Transcript_evidence=AK102657 (DDBJ%2C Best hit),AK065875 (DDBJ%2C Best hit);ORF_evidence=Q25AQ9 (UniProt);GO=Biological Process: galactose metabolic process (GO:0006012),Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: UDP-glucose 4-epimerase activity (GO:0003978),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),UDP-glucose 4-epimerase (IPR005886),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033101H12,J013046D23;TENOR=Os04t0618200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31403388	31403664	.	+	.	Parent=Os04t0618200-02
Chr04	irgsp1_rep	five_prime_UTR	31404223	31404224	.	+	.	Parent=Os04t0618200-02
Chr04	irgsp1_rep	CDS	31404225	31404347	.	+	0	Parent=Os04t0618200-02
Chr04	irgsp1_rep	CDS	31404726	31404839	.	+	0	Parent=Os04t0618200-02
Chr04	irgsp1_rep	CDS	31404927	31405034	.	+	0	Parent=Os04t0618200-02
Chr04	irgsp1_rep	CDS	31405138	31405229	.	+	0	Parent=Os04t0618200-02
Chr04	irgsp1_rep	CDS	31405640	31405781	.	+	1	Parent=Os04t0618200-02
Chr04	irgsp1_rep	CDS	31405874	31405968	.	+	0	Parent=Os04t0618200-02
Chr04	irgsp1_rep	CDS	31406041	31406170	.	+	1	Parent=Os04t0618200-02
Chr04	irgsp1_rep	CDS	31406254	31406398	.	+	0	Parent=Os04t0618200-02
Chr04	irgsp1_rep	CDS	31406505	31406731	.	+	2	Parent=Os04t0618200-02
Chr04	irgsp1_rep	three_prime_UTR	31406732	31407274	.	+	.	Parent=Os04t0618200-02
Chr04	irgsp1_rep	mRNA	31409845	31409908	.	-	.	ID=Os04t0618301-00;Name=Os04t0618301-00;Locus_id=Os04g0618301;Note=Non-protein coding transcript.;Transcript_evidence=EU943375 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0618301-00
Chr04	irgsp1_rep	exon	31409845	31409908	.	-	.	Parent=Os04t0618301-00
Chr04	irgsp1_rep	mRNA	31410510	31410971	.	+	.	ID=Os04t0618400-01;Name=Os04t0618400-01;Locus_id=Os04g0618400;Note=Similar to H0313F03.13 protein.;Transcript_evidence=AK108024 (DDBJ%2C Best hit);ORF_evidence=Q25AQ7 (UniProt);NIAS_FLcDNA=002-136-A06;Expression=AK108024;TENOR=Os04t0618400-01;KEGG=Os04t0618400-01
Chr04	irgsp1_rep	five_prime_UTR	31410510	31410576	.	+	.	Parent=Os04t0618400-01
Chr04	irgsp1_rep	CDS	31410577	31410834	.	+	0	Parent=Os04t0618400-01
Chr04	irgsp1_rep	three_prime_UTR	31410835	31410971	.	+	.	Parent=Os04t0618400-01
Chr04	irgsp1_rep	mRNA	31412175	31416159	.	-	.	ID=Os04t0618500-01;Name=Os04t0618500-01;Locus_id=Os04g0618500;Note=Similar to Gamma-SNAP (Fragment).;Transcript_evidence=AK103625 (DDBJ%2C Best hit);ORF_evidence=Q25AQ6 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Molecular Function: binding (GO:0005488);InterPro=NSF attachment protein (IPR000744),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033133N17;Expression=AK103625;TENOR=Os04t0618500-01;KEGG=Os04t0618500-01
Chr04	irgsp1_rep	five_prime_UTR	31416055	31416159	.	-	.	Parent=Os04t0618500-01
Chr04	irgsp1_rep	CDS	31416002	31416054	.	-	0	Parent=Os04t0618500-01
Chr04	irgsp1_rep	CDS	31414880	31414947	.	-	1	Parent=Os04t0618500-01
Chr04	irgsp1_rep	CDS	31414704	31414788	.	-	2	Parent=Os04t0618500-01
Chr04	irgsp1_rep	CDS	31414461	31414619	.	-	1	Parent=Os04t0618500-01
Chr04	irgsp1_rep	CDS	31414253	31414390	.	-	1	Parent=Os04t0618500-01
Chr04	irgsp1_rep	CDS	31413471	31413549	.	-	1	Parent=Os04t0618500-01
Chr04	irgsp1_rep	CDS	31413122	31413201	.	-	0	Parent=Os04t0618500-01
Chr04	irgsp1_rep	CDS	31412864	31412993	.	-	1	Parent=Os04t0618500-01
Chr04	irgsp1_rep	CDS	31412366	31412470	.	-	0	Parent=Os04t0618500-01
Chr04	irgsp1_rep	three_prime_UTR	31412175	31412365	.	-	.	Parent=Os04t0618500-01
Chr04	irgsp1_rep	mRNA	31416378	31420095	.	+	.	ID=Os04t0618600-01;Name=Os04t0618600-01;Locus_id=Os04g0618600;Oryzabase Gene Symbol Synonym(s)=OsbHLH101;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 101;Note=Similar to Long hypocotyl in far-red 1 (bHLH-like protein HFR1) (Reduced phytoChrome signaling) (Basic helix-loop-helix FBI1 protein) (Basic helix-loop-helix protein 26) (bHLH26) (AtbHLH026) (Reduced sensitivity to far-red light).;Transcript_evidence=AK106689 (DDBJ%2C Best hit);ORF_evidence=Q25AQ5 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=002-114-C05;Oryzabase=15386;Expression=AK106689;TENOR=Os04t0618600-01;KEGG=Os04t0618600-01
Chr04	irgsp1_rep	five_prime_UTR	31416378	31416693	.	+	.	Parent=Os04t0618600-01
Chr04	irgsp1_rep	five_prime_UTR	31416895	31416959	.	+	.	Parent=Os04t0618600-01
Chr04	irgsp1_rep	five_prime_UTR	31417842	31418348	.	+	.	Parent=Os04t0618600-01
Chr04	irgsp1_rep	five_prime_UTR	31418491	31418519	.	+	.	Parent=Os04t0618600-01
Chr04	irgsp1_rep	CDS	31418520	31418588	.	+	0	Parent=Os04t0618600-01
Chr04	irgsp1_rep	CDS	31418672	31418737	.	+	0	Parent=Os04t0618600-01
Chr04	irgsp1_rep	CDS	31418828	31418893	.	+	0	Parent=Os04t0618600-01
Chr04	irgsp1_rep	CDS	31419044	31419298	.	+	0	Parent=Os04t0618600-01
Chr04	irgsp1_rep	CDS	31419673	31419762	.	+	0	Parent=Os04t0618600-01
Chr04	irgsp1_rep	three_prime_UTR	31419763	31420095	.	+	.	Parent=Os04t0618600-01
Chr04	irgsp1_rep	mRNA	31420801	31425092	.	-	.	ID=Os04t0618700-01;Name=Os04t0618700-01;Locus_id=Os04g0618700;RAP-DB Gene Symbol Synonym(s)=OsFLS2;RAP-DB Gene Name Synonym(s)=FLAGELLIN SENSITIVE2;Oryzabase Gene Symbol Synonym(s)=Os-FLS2%2C FLS2%2C OsFLS2;Oryzabase Gene Name Synonym(s)=flagellin sensitive2;Note=Ortholog of Arabidopsis FLS2%2C flg22 (peptide derived from the bacterial flagellin N-terminus ) receptor%2C Immune response%2C Resistance against A. avenae;Transcript_evidence=AK120799;ORF_evidence=Q0JA29;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=Leucine-rich repeat domain superfamily (IPR032675),Protein kinase-like domain superfamily (IPR011009),Leucine-rich repeat-containing N-terminal%2C plant-type (IPR013210),Protein kinase domain (IPR000719),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J023012H18;Manual Curation=June 19%2C 2020;Literature_PMID=25617720,18986259;Oryzabase=11593;Expression=AK120799;TENOR=Os04t0618700-01;KEGG=Os04t0618700-01
Chr04	irgsp1_rep	five_prime_UTR	31425085	31425092	.	-	.	Parent=Os04t0618700-01
Chr04	irgsp1_rep	CDS	31421880	31425084	.	-	0	Parent=Os04t0618700-01
Chr04	irgsp1_rep	CDS	31421211	31421557	.	-	2	Parent=Os04t0618700-01
Chr04	irgsp1_rep	three_prime_UTR	31420801	31421210	.	-	.	Parent=Os04t0618700-01
Chr04	irgsp1_rep	mRNA	31422225	31425278	.	+	.	ID=Os04t0618800-00;Name=Os04t0618800-00;Locus_id=Os04g0618800;Note=Hypothetical protein.;Transcript_evidence=AK375599 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0618800-00
Chr04	irgsp1_rep	five_prime_UTR	31422225	31423114	.	+	.	Parent=Os04t0618800-00
Chr04	irgsp1_rep	CDS	31423115	31424344	.	+	0	Parent=Os04t0618800-00
Chr04	irgsp1_rep	three_prime_UTR	31424345	31425278	.	+	.	Parent=Os04t0618800-00
Chr04	irgsp1_rep	mRNA	31434880	31435978	.	-	.	ID=Os04t0618950-00;Name=Os04t0618950-00;Locus_id=Os04g0618950;Note=Similar to H0114G12.1 protein.;Transcript_evidence=BT083771 (DDBJ);ORF_evidence=Q25AP9 (UniProt);TENOR=Os04t0618950-00;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31435956	31435978	.	-	.	Parent=Os04t0618950-00
Chr04	irgsp1_rep	CDS	31434936	31435955	.	-	0	Parent=Os04t0618950-00
Chr04	irgsp1_rep	three_prime_UTR	31434880	31434935	.	-	.	Parent=Os04t0618950-00
Chr04	irgsp1_rep	mRNA	31439595	31443397	.	-	.	ID=Os04t0619000-01;Name=Os04t0619000-01;Locus_id=Os04g0619000;CGSNL Gene Symbol=NAC83;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 83;Oryzabase Gene Symbol Synonym(s)=ONAC083%2C ONAC83;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 083%2C NAC domain-containing protein 83;Note=Similar to L1332.9 protein.;Transcript_evidence=AK287632 (DDBJ%2C Best hit);ORF_evidence=Q9SC68 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=J065074F02;Oryzabase=15850;TENOR=Os04t0619000-01;KEGG=Os04t0619000-01
Chr04	irgsp1_rep	five_prime_UTR	31443355	31443397	.	-	.	Parent=Os04t0619000-01
Chr04	irgsp1_rep	CDS	31443139	31443354	.	-	0	Parent=Os04t0619000-01
Chr04	irgsp1_rep	three_prime_UTR	31442086	31443138	.	-	.	Parent=Os04t0619000-01
Chr04	irgsp1_rep	three_prime_UTR	31439595	31440344	.	-	.	Parent=Os04t0619000-01
Chr04	irgsp1_rep	mRNA	31448163	31449603	.	+	.	ID=Os04t0619200-01;Name=Os04t0619200-01;Locus_id=Os04g0619200;Note=Similar to H0114G12.3 protein.;Transcript_evidence=AK110910 (DDBJ%2C Best hit);ORF_evidence=Q25AR7 (UniProt);NIAS_FLcDNA=002-173-C01;Expression=AK110910;TENOR=Os04t0619200-01;KEGG=Os04t0619200-01
Chr04	irgsp1_rep	five_prime_UTR	31448163	31448486	.	+	.	Parent=Os04t0619200-01
Chr04	irgsp1_rep	CDS	31448487	31448663	.	+	0	Parent=Os04t0619200-01
Chr04	irgsp1_rep	three_prime_UTR	31448664	31449603	.	+	.	Parent=Os04t0619200-01
Chr04	irgsp1_rep	mRNA	31448208	31452461	.	+	.	ID=Os04t0619200-02;Name=Os04t0619200-02;Locus_id=Os04g0619200;Note=Similar to H0114G12.3 protein.;Transcript_evidence=AK063487 (DDBJ%2C Best hit);ORF_evidence=Q25AR7 (UniProt);NIAS_FLcDNA=001-116-C06;Expression=AK063487;TENOR=Os04t0619200-02;KEGG=Os04t0619200-02
Chr04	irgsp1_rep	five_prime_UTR	31448208	31448346	.	+	.	Parent=Os04t0619200-02
Chr04	irgsp1_rep	five_prime_UTR	31449837	31449896	.	+	.	Parent=Os04t0619200-02
Chr04	irgsp1_rep	five_prime_UTR	31449976	31450035	.	+	.	Parent=Os04t0619200-02
Chr04	irgsp1_rep	five_prime_UTR	31450162	31450486	.	+	.	Parent=Os04t0619200-02
Chr04	irgsp1_rep	CDS	31450487	31450676	.	+	0	Parent=Os04t0619200-02
Chr04	irgsp1_rep	CDS	31450796	31450866	.	+	2	Parent=Os04t0619200-02
Chr04	irgsp1_rep	three_prime_UTR	31450867	31451115	.	+	.	Parent=Os04t0619200-02
Chr04	irgsp1_rep	three_prime_UTR	31451420	31451585	.	+	.	Parent=Os04t0619200-02
Chr04	irgsp1_rep	three_prime_UTR	31451929	31452016	.	+	.	Parent=Os04t0619200-02
Chr04	irgsp1_rep	three_prime_UTR	31452137	31452461	.	+	.	Parent=Os04t0619200-02
Chr04	irgsp1_rep	mRNA	31448208	31452824	.	+	.	ID=Os04t0619200-03;Name=Os04t0619200-03;Locus_id=Os04g0619200;Note=Hypothetical gene.;Transcript_evidence=AK241647 (DDBJ%2C Best hit);ORF_evidence=Q25AR7 (UniProt);NIAS_FLcDNA=J065190H19;TENOR=Os04t0619200-03;KEGG=Os04t0619200-03
Chr04	irgsp1_rep	five_prime_UTR	31448208	31448346	.	+	.	Parent=Os04t0619200-03
Chr04	irgsp1_rep	five_prime_UTR	31449837	31449896	.	+	.	Parent=Os04t0619200-03
Chr04	irgsp1_rep	five_prime_UTR	31449976	31450035	.	+	.	Parent=Os04t0619200-03
Chr04	irgsp1_rep	five_prime_UTR	31450162	31450691	.	+	.	Parent=Os04t0619200-03
Chr04	irgsp1_rep	five_prime_UTR	31450796	31450844	.	+	.	Parent=Os04t0619200-03
Chr04	irgsp1_rep	CDS	31450845	31451069	.	+	0	Parent=Os04t0619200-03
Chr04	irgsp1_rep	three_prime_UTR	31451070	31451115	.	+	.	Parent=Os04t0619200-03
Chr04	irgsp1_rep	three_prime_UTR	31451420	31451585	.	+	.	Parent=Os04t0619200-03
Chr04	irgsp1_rep	three_prime_UTR	31451929	31452016	.	+	.	Parent=Os04t0619200-03
Chr04	irgsp1_rep	three_prime_UTR	31452137	31452824	.	+	.	Parent=Os04t0619200-03
Chr04	irgsp1_rep	mRNA	31458951	31462013	.	+	.	ID=Os04t0619300-01;Name=Os04t0619300-01;Locus_id=Os04g0619300;Oryzabase Gene Symbol Synonym(s)=OsFbox232%2C Os_F0576%2C Ctb1%2C OsCtb1;Oryzabase Gene Name Synonym(s)=F-box protein 232;Note=Similar to H0114G12.4 protein.;Transcript_evidence=AK065137 (DDBJ%2C Best hit);ORF_evidence=Q25AR6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Kelch repeat type 1 (IPR006652),Galactose oxidase%2C beta-propeller (IPR015916);NIAS_FLcDNA=J013002A05;Oryzabase=17019;TENOR=Os04t0619300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31458951	31459084	.	+	.	Parent=Os04t0619300-01
Chr04	irgsp1_rep	five_prime_UTR	31459201	31459311	.	+	.	Parent=Os04t0619300-01
Chr04	irgsp1_rep	CDS	31459312	31459312	.	+	0	Parent=Os04t0619300-01
Chr04	irgsp1_rep	CDS	31460331	31461760	.	+	2	Parent=Os04t0619300-01
Chr04	irgsp1_rep	three_prime_UTR	31461761	31462013	.	+	.	Parent=Os04t0619300-01
Chr04	irgsp1_rep	mRNA	31461349	31462010	.	+	.	ID=Os04t0619300-02;Name=Os04t0619300-02;Locus_id=Os04g0619300;Oryzabase Gene Symbol Synonym(s)=OsFbox232%2C Os_F0576%2C Ctb1%2C OsCtb1;Oryzabase Gene Name Synonym(s)=F-box protein 232;Note=Similar to L1332.8 protein.;Transcript_evidence=AK061943 (DDBJ%2C Best hit);ORF_evidence=Q9SC69 (UniProt);InterPro=Galactose oxidase%2C beta-propeller (IPR015916);NIAS_FLcDNA=001-042-E01;Oryzabase=17019;Expression=AK061943;TENOR=Os04t0619300-02;KEGG=Os04t0619300-02
Chr04	irgsp1_rep	five_prime_UTR	31461349	31461349	.	+	.	Parent=Os04t0619300-02
Chr04	irgsp1_rep	CDS	31461350	31461760	.	+	0	Parent=Os04t0619300-02
Chr04	irgsp1_rep	three_prime_UTR	31461761	31462010	.	+	.	Parent=Os04t0619300-02
Chr04	irgsp1_rep	mRNA	31463105	31466291	.	-	.	ID=Os04t0619400-01;Name=Os04t0619400-01;Locus_id=Os04g0619400;CGSNL Gene Symbol=RLCK160;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 160;Oryzabase Gene Symbol Synonym(s)=OsRLCK160%2C PTK6%2C OsPTK6;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 160%2C Protein Tyrosine Kinase 6;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK099667 (DDBJ%2C Best hit),AK066337 (DDBJ%2C Best hit);ORF_evidence=Q25AR5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J013067H07,J013067H10;Oryzabase=18863;Expression=AK099667;TENOR=Os04t0619400-01;KEGG=Os04t0619400-01
Chr04	irgsp1_rep	five_prime_UTR	31466123	31466291	.	-	.	Parent=Os04t0619400-01
Chr04	irgsp1_rep	five_prime_UTR	31465004	31465063	.	-	.	Parent=Os04t0619400-01
Chr04	irgsp1_rep	CDS	31464952	31465003	.	-	0	Parent=Os04t0619400-01
Chr04	irgsp1_rep	CDS	31464749	31464855	.	-	2	Parent=Os04t0619400-01
Chr04	irgsp1_rep	CDS	31464448	31464658	.	-	0	Parent=Os04t0619400-01
Chr04	irgsp1_rep	CDS	31464092	31464329	.	-	2	Parent=Os04t0619400-01
Chr04	irgsp1_rep	CDS	31463857	31464007	.	-	1	Parent=Os04t0619400-01
Chr04	irgsp1_rep	CDS	31463363	31463722	.	-	0	Parent=Os04t0619400-01
Chr04	irgsp1_rep	three_prime_UTR	31463105	31463362	.	-	.	Parent=Os04t0619400-01
Chr04	irgsp1_rep	mRNA	31463444	31463727	.	+	.	ID=Os04t0619450-00;Name=Os04t0619450-00;Locus_id=Os04g0619450;Note=Non-protein coding transcript.;Transcript_evidence=EU947050 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0619450-00
Chr04	irgsp1_rep	exon	31463444	31463727	.	+	.	Parent=Os04t0619450-00
Chr04	irgsp1_rep	mRNA	31474399	31477315	.	+	.	ID=Os04t0619500-01;Name=Os04t0619500-01;Locus_id=Os04g0619500;Note=Ovarian tumour%2C otubain domain containing protein.;Transcript_evidence=AK066247 (DDBJ%2C Best hit);ORF_evidence=Q9SC71 (UniProt);InterPro=Ovarian tumour%2C otubain (IPR003323);NIAS_FLcDNA=J013052H21;Expression=AK066247;TENOR=Os04t0619500-01;KEGG=Os04t0619500-01
Chr04	irgsp1_rep	five_prime_UTR	31474399	31474423	.	+	.	Parent=Os04t0619500-01
Chr04	irgsp1_rep	CDS	31474424	31474536	.	+	0	Parent=Os04t0619500-01
Chr04	irgsp1_rep	CDS	31476149	31477007	.	+	1	Parent=Os04t0619500-01
Chr04	irgsp1_rep	three_prime_UTR	31477008	31477315	.	+	.	Parent=Os04t0619500-01
Chr04	irgsp1_rep	mRNA	31478338	31481997	.	-	.	ID=Os04t0619600-01;Name=Os04t0619600-01;Locus_id=Os04g0619600;CGSNL Gene Symbol=RLCK161;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 161;Oryzabase Gene Symbol Synonym(s)=OsRLCK161%2C OsCrRLK1L9;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 161%2C Catharanthus roseus receptor-like kinase1-like kinase 9;Note=Similar to Resistance protein candidate (Fragment).;Transcript_evidence=AK119568 (DDBJ%2C Best hit);ORF_evidence=Q01JV1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635),Malectin-like carbohydrate-binding domain (IPR024788);NIAS_FLcDNA=002-117-A07;Oryzabase=18864;Expression=AK119568;TENOR=Os04t0619600-01;KEGG=Os04t0619600-01
Chr04	irgsp1_rep	five_prime_UTR	31481515	31481997	.	-	.	Parent=Os04t0619600-01
Chr04	irgsp1_rep	five_prime_UTR	31481202	31481276	.	-	.	Parent=Os04t0619600-01
Chr04	irgsp1_rep	CDS	31478667	31481201	.	-	0	Parent=Os04t0619600-01
Chr04	irgsp1_rep	three_prime_UTR	31478338	31478666	.	-	.	Parent=Os04t0619600-01
Chr04	irgsp1_rep	mRNA	31478446	31481890	.	-	.	ID=Os04t0619600-02;Name=Os04t0619600-02;Locus_id=Os04g0619600;CGSNL Gene Symbol=RLCK161;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 161;Oryzabase Gene Symbol Synonym(s)=OsRLCK161%2C OsCrRLK1L9;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 161%2C Catharanthus roseus receptor-like kinase1-like kinase 9;Note=Similar to Resistance protein candidate (Fragment).;Transcript_evidence=AK069252 (DDBJ%2C Best hit);ORF_evidence=Q01JV1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635),Malectin-like carbohydrate-binding domain (IPR024788);NIAS_FLcDNA=J023015B12;Oryzabase=18864;Expression=AK069252;TENOR=Os04t0619600-02;KEGG=Os04t0619600-02
Chr04	irgsp1_rep	five_prime_UTR	31481515	31481890	.	-	.	Parent=Os04t0619600-02
Chr04	irgsp1_rep	five_prime_UTR	31481202	31481276	.	-	.	Parent=Os04t0619600-02
Chr04	irgsp1_rep	CDS	31478667	31481201	.	-	0	Parent=Os04t0619600-02
Chr04	irgsp1_rep	three_prime_UTR	31478446	31478666	.	-	.	Parent=Os04t0619600-02
Chr04	irgsp1_rep	mRNA	31478250	31481837	.	-	.	ID=Os04t0619600-03;Name=Os04t0619600-03;Locus_id=Os04g0619600;CGSNL Gene Symbol=RLCK161;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 161;Oryzabase Gene Symbol Synonym(s)=OsRLCK161%2C OsCrRLK1L9;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 161%2C Catharanthus roseus receptor-like kinase1-like kinase 9;Note=Similar to Resistance protein candidate (Fragment).;Transcript_evidence=AK065956 (DDBJ%2C Best hit);ORF_evidence=Q01JV1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635),Malectin-like carbohydrate-binding domain (IPR024788);NIAS_FLcDNA=J013044D11;Oryzabase=18864;Expression=AK065956;TENOR=Os04t0619600-03;KEGG=Os04t0619600-03
Chr04	irgsp1_rep	five_prime_UTR	31481515	31481837	.	-	.	Parent=Os04t0619600-03
Chr04	irgsp1_rep	five_prime_UTR	31481202	31481276	.	-	.	Parent=Os04t0619600-03
Chr04	irgsp1_rep	CDS	31478667	31481201	.	-	0	Parent=Os04t0619600-03
Chr04	irgsp1_rep	three_prime_UTR	31478250	31478666	.	-	.	Parent=Os04t0619600-03
Chr04	irgsp1_rep	mRNA	31485367	31488482	.	-	.	ID=Os04t0619700-01;Name=Os04t0619700-01;Locus_id=Os04g0619700;Oryzabase Gene Symbol Synonym(s)=OsWD40-110%2C OsFbox233%2C Os_F0069;Oryzabase Gene Name Synonym(s)=F-box protein 233;Note=Similar to H0114G12.8 protein.;Transcript_evidence=AK111585 (DDBJ%2C Best hit);ORF_evidence=A8B8A7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),F-box domain%2C cyclin-like (IPR001810),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013089H02;Oryzabase=10791;TENOR=Os04t0619700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31488383	31488482	.	-	.	Parent=Os04t0619700-01
Chr04	irgsp1_rep	five_prime_UTR	31487495	31487551	.	-	.	Parent=Os04t0619700-01
Chr04	irgsp1_rep	CDS	31485788	31487494	.	-	0	Parent=Os04t0619700-01
Chr04	irgsp1_rep	three_prime_UTR	31485367	31485787	.	-	.	Parent=Os04t0619700-01
Chr04	irgsp1_rep	mRNA	31492252	31493474	.	+	.	ID=Os04t0619800-00;Name=Os04t0619800-00;Locus_id=Os04g0619800;Note=Similar to H0714H04.3 protein.;Transcript_evidence=CT836497 (DDBJ%2C Best hit);ORF_evidence=Q9SC74 (UniProt);TENOR=Os04t0619800-00;KEGG=Os04t0619800-00
Chr04	irgsp1_rep	five_prime_UTR	31492252	31492347	.	+	.	Parent=Os04t0619800-00
Chr04	irgsp1_rep	five_prime_UTR	31492729	31492745	.	+	.	Parent=Os04t0619800-00
Chr04	irgsp1_rep	CDS	31492746	31493177	.	+	0	Parent=Os04t0619800-00
Chr04	irgsp1_rep	three_prime_UTR	31493178	31493474	.	+	.	Parent=Os04t0619800-00
Chr04	irgsp1_rep	mRNA	31497058	31500179	.	+	.	ID=Os04t0619900-00;Name=Os04t0619900-00;Locus_id=Os04g0619900;Note=Similar to H0114G12.10 protein.;Transcript_evidence=EU968033 (DDBJ);ORF_evidence=Q01JU8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin (IPR000626),Ubiquitin supergroup (IPR019955);TENOR=Os04t0619900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	31497058	31497748	.	+	0	Parent=Os04t0619900-00
Chr04	irgsp1_rep	CDS	31499815	31500179	.	+	2	Parent=Os04t0619900-00
Chr04	irgsp1_rep	mRNA	31502967	31514308	.	-	.	ID=Os04t0620000-01;Name=Os04t0620000-01;Locus_id=Os04g0620000;RAP-DB Gene Symbol Synonym(s)=MRP1%2C OsABCC1%2C OsABCC1-1%2C OsABCC1-2%2C OsMRP1;RAP-DB Gene Name Synonym(s)=MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1%2C ABC transporter superfamily ABCC subgroup member 1%2C multidrug resistance-associated protein 1%2C C-type ATP-binding cassette transporter 1%2C C-type ABC transporter 1;CGSNL Gene Symbol=MRP1;CGSNL Gene Name=MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsABCC1%2C ABCC1%2C OsABCC1-1%2C OsABCC1-2%2C OsMRP1;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCC subgroup member 1%2C multidrug resistance-associated protein 1%2C C-type ATP-binding cassette transporter 1%2C C-type ABC transporter 1;Note=C-type ATP-binding cassette (ABC) transporter%2C Arsenic (As) detoxification%2C Reduction of As in grains;Transcript_evidence=AJ535215;ORF_evidence=Q8GU51;GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626),Cellular Component: integral component of membrane (GO:0016021);InterPro=ABC transporter type 1%2C transmembrane domain (IPR011527),P-loop containing nucleoside triphosphate hydrolase (IPR027417),ABC transporter-like (IPR003439),AAA+ ATPase domain (IPR003593),ABC transporter%2C conserved site (IPR017871);Manual Curation=June 26%2C 2015;Literature_PMID=25331872,12644668;Oryzabase=11952;TENOR=Os04t0620000-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	31513979	31514308	.	-	0	Parent=Os04t0620000-01
Chr04	irgsp1_rep	CDS	31513673	31513854	.	-	0	Parent=Os04t0620000-01
Chr04	irgsp1_rep	CDS	31513518	31513557	.	-	1	Parent=Os04t0620000-01
Chr04	irgsp1_rep	CDS	31513285	31513444	.	-	0	Parent=Os04t0620000-01
Chr04	irgsp1_rep	CDS	31513040	31513154	.	-	2	Parent=Os04t0620000-01
Chr04	irgsp1_rep	CDS	31512883	31512963	.	-	1	Parent=Os04t0620000-01
Chr04	irgsp1_rep	CDS	31512752	31512776	.	-	1	Parent=Os04t0620000-01
Chr04	irgsp1_rep	CDS	31512574	31512630	.	-	0	Parent=Os04t0620000-01
Chr04	irgsp1_rep	CDS	31512271	31512336	.	-	0	Parent=Os04t0620000-01
Chr04	irgsp1_rep	CDS	31512049	31512123	.	-	0	Parent=Os04t0620000-01
Chr04	irgsp1_rep	CDS	31511623	31511730	.	-	0	Parent=Os04t0620000-01
Chr04	irgsp1_rep	CDS	31511214	31511348	.	-	0	Parent=Os04t0620000-01
Chr04	irgsp1_rep	CDS	31510553	31510659	.	-	0	Parent=Os04t0620000-01
Chr04	irgsp1_rep	CDS	31510376	31510469	.	-	1	Parent=Os04t0620000-01
Chr04	irgsp1_rep	CDS	31509926	31510093	.	-	0	Parent=Os04t0620000-01
Chr04	irgsp1_rep	CDS	31509506	31509646	.	-	0	Parent=Os04t0620000-01
Chr04	irgsp1_rep	CDS	31508850	31509056	.	-	0	Parent=Os04t0620000-01
Chr04	irgsp1_rep	CDS	31508667	31508765	.	-	0	Parent=Os04t0620000-01
Chr04	irgsp1_rep	CDS	31508299	31508451	.	-	0	Parent=Os04t0620000-01
Chr04	irgsp1_rep	CDS	31507282	31507676	.	-	0	Parent=Os04t0620000-01
Chr04	irgsp1_rep	CDS	31506946	31507126	.	-	1	Parent=Os04t0620000-01
Chr04	irgsp1_rep	CDS	31506521	31506844	.	-	0	Parent=Os04t0620000-01
Chr04	irgsp1_rep	CDS	31505662	31506418	.	-	0	Parent=Os04t0620000-01
Chr04	irgsp1_rep	CDS	31505459	31505580	.	-	2	Parent=Os04t0620000-01
Chr04	irgsp1_rep	CDS	31504900	31505145	.	-	0	Parent=Os04t0620000-01
Chr04	irgsp1_rep	CDS	31504250	31504351	.	-	0	Parent=Os04t0620000-01
Chr04	irgsp1_rep	CDS	31503739	31504060	.	-	0	Parent=Os04t0620000-01
Chr04	irgsp1_rep	CDS	31503276	31503364	.	-	2	Parent=Os04t0620000-01
Chr04	irgsp1_rep	three_prime_UTR	31502967	31503269	.	-	.	Parent=Os04t0620000-01
Chr04	irgsp1_rep	mRNA	31525857	31527071	.	-	.	ID=Os04t0620132-00;Name=Os04t0620132-00;Locus_id=Os04g0620132;Note=Hypothetical gene.;Transcript_evidence=BT062647 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0620132-00;KEGG=Os04t0620132-00
Chr04	irgsp1_rep	five_prime_UTR	31526947	31527071	.	-	.	Parent=Os04t0620132-00
Chr04	irgsp1_rep	CDS	31526650	31526946	.	-	0	Parent=Os04t0620132-00
Chr04	irgsp1_rep	three_prime_UTR	31526553	31526649	.	-	.	Parent=Os04t0620132-00
Chr04	irgsp1_rep	three_prime_UTR	31525857	31526451	.	-	.	Parent=Os04t0620132-00
Chr04	irgsp1_rep	mRNA	31524614	31527861	.	+	.	ID=Os04t0620200-01;Name=Os04t0620200-01;Locus_id=Os04g0620200;RAP-DB Gene Symbol Synonym(s)=GSD1%2C OsREM6.6%2C REM6.6;RAP-DB Gene Name Synonym(s)=GRAIN SETTING DEFECT1%2C Grain setting defect1%2C Grain setting defect 1%2C Remorin 6.6%2C remorin group 6 member 6;CGSNL Gene Symbol=GSD1;CGSNL Gene Name=GRAIN SETTING DEFECT1;Oryzabase Gene Symbol Synonym(s)=OsREM6.6%2C REM6.6%2C OsGSD1;Oryzabase Gene Name Synonym(s)=Grain setting defect1%2C Grain setting defect 1%2C Remorin 6.6%2C remorin group 6 member 6;Note=Remorin protein%2C Grain setting;Transcript_evidence=Inferred from literature;ORF_evidence=Q7XS35;InterPro=Remorin%2C C-terminal (IPR005516);Manual Curation=November 17%2C 2014;Literature_PMID=25253885;Oryzabase=20266;TENOR=Os04t0620200-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31524614	31524751	.	+	.	Parent=Os04t0620200-01
Chr04	irgsp1_rep	CDS	31524752	31524782	.	+	0	Parent=Os04t0620200-01
Chr04	irgsp1_rep	CDS	31525560	31525718	.	+	2	Parent=Os04t0620200-01
Chr04	irgsp1_rep	CDS	31525803	31526468	.	+	2	Parent=Os04t0620200-01
Chr04	irgsp1_rep	CDS	31526586	31527030	.	+	2	Parent=Os04t0620200-01
Chr04	irgsp1_rep	CDS	31527164	31527245	.	+	1	Parent=Os04t0620200-01
Chr04	irgsp1_rep	CDS	31527393	31527608	.	+	0	Parent=Os04t0620200-01
Chr04	irgsp1_rep	three_prime_UTR	31527609	31527861	.	+	.	Parent=Os04t0620200-01
Chr04	irgsp1_rep	mRNA	31531978	31541045	.	+	.	ID=Os04t0620400-01;Name=Os04t0620400-01;Locus_id=Os04g0620400;Note=SIT4 phosphatase-associated protein family protein.;Transcript_evidence=AK066330 (DDBJ%2C Best hit);ORF_evidence=Q01JU5 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=SIT4 phosphatase-associated protein family (IPR007587),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013061K16;TENOR=Os04t0620400-01
Chr04	irgsp1_rep	five_prime_UTR	31531978	31532192	.	+	.	Parent=Os04t0620400-01
Chr04	irgsp1_rep	five_prime_UTR	31533303	31533434	.	+	.	Parent=Os04t0620400-01
Chr04	irgsp1_rep	CDS	31533435	31533473	.	+	0	Parent=Os04t0620400-01
Chr04	irgsp1_rep	CDS	31533556	31533659	.	+	0	Parent=Os04t0620400-01
Chr04	irgsp1_rep	CDS	31534242	31534328	.	+	1	Parent=Os04t0620400-01
Chr04	irgsp1_rep	CDS	31534409	31534484	.	+	1	Parent=Os04t0620400-01
Chr04	irgsp1_rep	CDS	31534590	31534664	.	+	0	Parent=Os04t0620400-01
Chr04	irgsp1_rep	CDS	31534752	31534805	.	+	0	Parent=Os04t0620400-01
Chr04	irgsp1_rep	CDS	31535796	31535855	.	+	0	Parent=Os04t0620400-01
Chr04	irgsp1_rep	CDS	31535984	31536100	.	+	0	Parent=Os04t0620400-01
Chr04	irgsp1_rep	CDS	31536463	31536557	.	+	0	Parent=Os04t0620400-01
Chr04	irgsp1_rep	CDS	31536677	31536879	.	+	1	Parent=Os04t0620400-01
Chr04	irgsp1_rep	CDS	31537298	31537395	.	+	2	Parent=Os04t0620400-01
Chr04	irgsp1_rep	CDS	31537659	31537762	.	+	0	Parent=Os04t0620400-01
Chr04	irgsp1_rep	CDS	31537829	31537994	.	+	1	Parent=Os04t0620400-01
Chr04	irgsp1_rep	CDS	31538062	31538184	.	+	0	Parent=Os04t0620400-01
Chr04	irgsp1_rep	CDS	31538640	31538722	.	+	0	Parent=Os04t0620400-01
Chr04	irgsp1_rep	CDS	31539607	31539748	.	+	1	Parent=Os04t0620400-01
Chr04	irgsp1_rep	CDS	31540473	31540502	.	+	0	Parent=Os04t0620400-01
Chr04	irgsp1_rep	CDS	31540619	31540689	.	+	0	Parent=Os04t0620400-01
Chr04	irgsp1_rep	CDS	31540789	31541045	.	+	1	Parent=Os04t0620400-01
Chr04	irgsp1_rep	mRNA	31541180	31541869	.	+	.	ID=Os04t0620500-01;Name=Os04t0620500-01;Locus_id=Os04g0620500;Note=Similar to H0714H04.7 protein.;Transcript_evidence=AK062688 (DDBJ%2C Best hit);ORF_evidence=Q01JU5 (UniProt);NIAS_FLcDNA=001-105-H12;Expression=AK062688;TENOR=Os04t0620500-01;KEGG=Os04t0620500-01
Chr04	irgsp1_rep	CDS	31541180	31541392	.	+	0	Parent=Os04t0620500-01
Chr04	irgsp1_rep	three_prime_UTR	31541393	31541869	.	+	.	Parent=Os04t0620500-01
Chr04	irgsp1_rep	mRNA	31541994	31542752	.	-	.	ID=Os04t0620600-01;Name=Os04t0620600-01;Locus_id=Os04g0620600;Oryzabase Gene Symbol Synonym(s)=OsSTA132;Note=Similar to NOI protein.;Transcript_evidence=AK121449 (DDBJ%2C Best hit);ORF_evidence=Q01JU4 (UniProt);InterPro=Pathogenic type III effector avirulence factor Avr cleavage site (IPR008700);NIAS_FLcDNA=J023142G04;Oryzabase=19421;Expression=AK121449;TENOR=Os04t0620600-01;KEGG=Os04t0620600-01
Chr04	irgsp1_rep	five_prime_UTR	31542636	31542752	.	-	.	Parent=Os04t0620600-01
Chr04	irgsp1_rep	CDS	31542624	31542635	.	-	0	Parent=Os04t0620600-01
Chr04	irgsp1_rep	CDS	31542302	31542538	.	-	0	Parent=Os04t0620600-01
Chr04	irgsp1_rep	CDS	31542191	31542220	.	-	0	Parent=Os04t0620600-01
Chr04	irgsp1_rep	three_prime_UTR	31541994	31542190	.	-	.	Parent=Os04t0620600-01
Chr04	irgsp1_rep	mRNA	31544124	31551152	.	+	.	ID=Os04t0620700-01;Name=Os04t0620700-01;Locus_id=Os04g0620700;RAP-DB Gene Symbol Synonym(s)=OsNUC1%2C OsNUC1-L;RAP-DB Gene Name Synonym(s)=nucleolin 1;CGSNL Gene Symbol=NUC1;CGSNL Gene Name=NUCLEOLIN 1;Oryzabase Gene Symbol Synonym(s)=OsNUC1%2C OsNUC1-S%2C OsNUC1-L;Oryzabase Gene Name Synonym(s)=nucleolin 1%2C OsNucleolin1-L%2C OsNucleolin1-S;Note=Nucleolin-like protein%2C Salt stress response;Transcript_evidence=AK103446;ORF_evidence=Q7XTT4;GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=Nucleotide-binding alpha-beta plait domain (IPR012677),RNA recognition motif domain (IPR000504),NUCL%2C RNA recognition motif 1 (IPR034349);NIAS_FLcDNA=J033129G11;Manual Curation=January 12%2C 2017;Literature_PMID=24157209;Oryzabase=15289;Expression=AK103446;TENOR=Os04t0620700-01;KEGG=Os04t0620700-01
Chr04	irgsp1_rep	five_prime_UTR	31544124	31544242	.	+	.	Parent=Os04t0620700-01
Chr04	irgsp1_rep	five_prime_UTR	31545885	31545906	.	+	.	Parent=Os04t0620700-01
Chr04	irgsp1_rep	CDS	31545907	31545988	.	+	0	Parent=Os04t0620700-01
Chr04	irgsp1_rep	CDS	31546075	31546250	.	+	2	Parent=Os04t0620700-01
Chr04	irgsp1_rep	CDS	31546896	31546997	.	+	0	Parent=Os04t0620700-01
Chr04	irgsp1_rep	CDS	31547089	31547319	.	+	0	Parent=Os04t0620700-01
Chr04	irgsp1_rep	CDS	31547895	31547996	.	+	0	Parent=Os04t0620700-01
Chr04	irgsp1_rep	CDS	31548166	31548258	.	+	0	Parent=Os04t0620700-01
Chr04	irgsp1_rep	CDS	31548376	31548453	.	+	0	Parent=Os04t0620700-01
Chr04	irgsp1_rep	CDS	31548529	31548588	.	+	0	Parent=Os04t0620700-01
Chr04	irgsp1_rep	CDS	31548695	31548772	.	+	0	Parent=Os04t0620700-01
Chr04	irgsp1_rep	CDS	31548852	31548995	.	+	0	Parent=Os04t0620700-01
Chr04	irgsp1_rep	CDS	31549085	31549183	.	+	0	Parent=Os04t0620700-01
Chr04	irgsp1_rep	CDS	31549285	31549341	.	+	0	Parent=Os04t0620700-01
Chr04	irgsp1_rep	CDS	31549434	31549525	.	+	0	Parent=Os04t0620700-01
Chr04	irgsp1_rep	CDS	31549603	31549720	.	+	1	Parent=Os04t0620700-01
Chr04	irgsp1_rep	CDS	31549857	31549945	.	+	0	Parent=Os04t0620700-01
Chr04	irgsp1_rep	CDS	31550072	31550162	.	+	1	Parent=Os04t0620700-01
Chr04	irgsp1_rep	CDS	31550277	31550368	.	+	0	Parent=Os04t0620700-01
Chr04	irgsp1_rep	CDS	31550516	31550823	.	+	1	Parent=Os04t0620700-01
Chr04	irgsp1_rep	CDS	31550940	31550971	.	+	2	Parent=Os04t0620700-01
Chr04	irgsp1_rep	three_prime_UTR	31550972	31551152	.	+	.	Parent=Os04t0620700-01
Chr04	irgsp1_rep	mRNA	31547142	31551203	.	+	.	ID=Os04t0620700-02;Name=Os04t0620700-02;Locus_id=Os04g0620700;RAP-DB Gene Symbol Synonym(s)=OsNUC1-S;RAP-DB Gene Name Synonym(s)=NUCLEOLIN1-S;CGSNL Gene Symbol=NUC1;CGSNL Gene Name=NUCLEOLIN 1;Oryzabase Gene Symbol Synonym(s)=OsNUC1%2C OsNUC1-S%2C OsNUC1-L;Oryzabase Gene Name Synonym(s)=nucleolin 1%2C OsNucleolin1-L%2C OsNucleolin1-S;Note=Short isoform of nucleolin%2C Salt-stress tolerance%2C Photosynthetic enhancement;Transcript_evidence=AK063918;ORF_evidence=A0A0P0WF51;GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Nucleotide-binding alpha-beta plait domain superfamily (IPR012677),RNA-binding domain superfamily (IPR035979),RNA recognition motif domain (IPR000504),NUCL%2C RNA recognition motif 1 (IPR034349);NIAS_FLcDNA=001-123-B06;Manual Curation=September 25%2C 2019;Literature_PMID=30544581;Oryzabase=15289;Expression=AK063918;TENOR=Os04t0620700-02;Subcellular location=cytoplasm (GO:0005737), nucleus (GO:0005634)
Chr04	irgsp1_rep	five_prime_UTR	31547142	31547142	.	+	.	Parent=Os04t0620700-02
Chr04	irgsp1_rep	CDS	31547143	31547319	.	+	0	Parent=Os04t0620700-02
Chr04	irgsp1_rep	CDS	31547895	31547996	.	+	0	Parent=Os04t0620700-02
Chr04	irgsp1_rep	CDS	31548166	31548258	.	+	0	Parent=Os04t0620700-02
Chr04	irgsp1_rep	CDS	31548376	31548453	.	+	0	Parent=Os04t0620700-02
Chr04	irgsp1_rep	CDS	31548529	31548588	.	+	0	Parent=Os04t0620700-02
Chr04	irgsp1_rep	CDS	31548695	31548772	.	+	0	Parent=Os04t0620700-02
Chr04	irgsp1_rep	CDS	31548852	31548995	.	+	0	Parent=Os04t0620700-02
Chr04	irgsp1_rep	CDS	31549085	31549183	.	+	0	Parent=Os04t0620700-02
Chr04	irgsp1_rep	CDS	31549285	31549341	.	+	0	Parent=Os04t0620700-02
Chr04	irgsp1_rep	CDS	31549434	31549525	.	+	0	Parent=Os04t0620700-02
Chr04	irgsp1_rep	CDS	31549603	31549720	.	+	1	Parent=Os04t0620700-02
Chr04	irgsp1_rep	CDS	31549857	31549945	.	+	0	Parent=Os04t0620700-02
Chr04	irgsp1_rep	CDS	31550072	31550162	.	+	1	Parent=Os04t0620700-02
Chr04	irgsp1_rep	CDS	31550277	31550368	.	+	0	Parent=Os04t0620700-02
Chr04	irgsp1_rep	CDS	31550516	31550823	.	+	1	Parent=Os04t0620700-02
Chr04	irgsp1_rep	CDS	31550940	31550971	.	+	2	Parent=Os04t0620700-02
Chr04	irgsp1_rep	three_prime_UTR	31550972	31551203	.	+	.	Parent=Os04t0620700-02
Chr04	irgsp1_rep	mRNA	31551859	31553373	.	+	.	ID=Os04t0620800-00;Name=Os04t0620800-00;Locus_id=Os04g0620800;CGSNL Gene Symbol=PI63;CGSNL Gene Name=PYRICULARIA ORYZAE RESISTANCE 63;Oryzabase Gene Symbol Synonym(s)=Pi63%2C Pikahei-1(t)%2C RGA3%2C RGA1-NB;Oryzabase Gene Name Synonym(s)=Magnaporthe grisea resistance-63%2C Blast resistance 63%2C resistance gene analog 3;Note=Similar to H0714H04.10 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01JU2 (UniProt);Oryzabase=22140;TENOR=Os04t0620800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	31551859	31552109	.	+	0	Parent=Os04t0620800-00
Chr04	irgsp1_rep	CDS	31553082	31553373	.	+	1	Parent=Os04t0620800-00
Chr04	irgsp1_rep	mRNA	31554480	31558637	.	+	.	ID=Os04t0620950-01;Name=Os04t0620950-01;Locus_id=Os04g0620950;CGSNL Gene Symbol=PI63;CGSNL Gene Name=PYRICULARIA ORYZAE RESISTANCE 63;Oryzabase Gene Symbol Synonym(s)=Pi63%2C Pikahei-1(t)%2C RGA3%2C RGA1-NB;Oryzabase Gene Name Synonym(s)=Magnaporthe grisea resistance-63%2C Blast resistance 63%2C resistance gene analog 3;Note=Hypothetical conserved gene.;Transcript_evidence=AK287977 (DDBJ%2C Best hit);ORF_evidence=Q7XSJ4 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);NIAS_FLcDNA=J075080L17;Oryzabase=22140;TENOR=Os04t0620950-01;KEGG=Os04t0620950-01
Chr04	irgsp1_rep	five_prime_UTR	31554480	31554480	.	+	.	Parent=Os04t0620950-01
Chr04	irgsp1_rep	CDS	31554481	31556013	.	+	0	Parent=Os04t0620950-01
Chr04	irgsp1_rep	three_prime_UTR	31556014	31556141	.	+	.	Parent=Os04t0620950-01
Chr04	irgsp1_rep	three_prime_UTR	31556227	31557976	.	+	.	Parent=Os04t0620950-01
Chr04	irgsp1_rep	three_prime_UTR	31558064	31558262	.	+	.	Parent=Os04t0620950-01
Chr04	irgsp1_rep	three_prime_UTR	31558350	31558637	.	+	.	Parent=Os04t0620950-01
Chr04	irgsp1_rep	mRNA	31562376	31562964	.	-	.	ID=Os04t0621100-01;Name=Os04t0621100-01;Locus_id=Os04g0621100;Note=Hypothetical protein.;Transcript_evidence=AK063174 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-112-A04;Expression=AK063174;TENOR=Os04t0621100-01;KEGG=Os04t0621100-01
Chr04	irgsp1_rep	five_prime_UTR	31562852	31562964	.	-	.	Parent=Os04t0621100-01
Chr04	irgsp1_rep	CDS	31562498	31562851	.	-	0	Parent=Os04t0621100-01
Chr04	irgsp1_rep	three_prime_UTR	31562376	31562497	.	-	.	Parent=Os04t0621100-01
Chr04	irgsp1_rep	mRNA	31577517	31582927	.	+	.	ID=Os04t0621500-00;Name=Os04t0621500-00;Locus_id=Os04g0621500;Note=Disease resistance protein domain containing protein.;Transcript_evidence=AJ507090 (DDBJ);ORF_evidence=B9FCK5 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os04t0621500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	31577517	31578194	.	+	0	Parent=Os04t0621500-00
Chr04	irgsp1_rep	CDS	31578317	31580970	.	+	0	Parent=Os04t0621500-00
Chr04	irgsp1_rep	CDS	31581124	31581266	.	+	1	Parent=Os04t0621500-00
Chr04	irgsp1_rep	CDS	31581354	31582927	.	+	2	Parent=Os04t0621500-00
Chr04	irgsp1_rep	mRNA	31597884	31602430	.	-	.	ID=Os04t0621650-01;Name=Os04t0621650-01;Locus_id=Os04g0621650;Note=Hypothetical gene.;Transcript_evidence=AK288393 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090027L11;TENOR=Os04t0621650-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31600460	31602430	.	-	.	Parent=Os04t0621650-01
Chr04	irgsp1_rep	CDS	31600061	31600459	.	-	0	Parent=Os04t0621650-01
Chr04	irgsp1_rep	three_prime_UTR	31597884	31600060	.	-	.	Parent=Os04t0621650-01
Chr04	irgsp1_rep	mRNA	31606004	31609869	.	+	.	ID=Os04t0621900-01;Name=Os04t0621900-01;Locus_id=Os04g0621900;Note=Conserved hypothetical protein.;Transcript_evidence=AK288361 (DDBJ%2C Best hit);ORF_evidence=Q2QSF8 (UniProt);NIAS_FLcDNA=J090025B15;TENOR=Os04t0621900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31606004	31607697	.	+	.	Parent=Os04t0621900-01
Chr04	irgsp1_rep	CDS	31607698	31607985	.	+	0	Parent=Os04t0621900-01
Chr04	irgsp1_rep	three_prime_UTR	31607986	31609869	.	+	.	Parent=Os04t0621900-01
Chr04	irgsp1_rep	mRNA	31609076	31610752	.	-	.	ID=Os04t0622000-00;Name=Os04t0622000-00;Locus_id=Os04g0622000;Note=Similar to bromodomain containing protein.;Transcript_evidence=FP101686 (DDBJ);ORF_evidence=NP_001151218.1 (RefSeq);TENOR=Os04t0622000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	31609970	31610752	.	-	0	Parent=Os04t0622000-00
Chr04	irgsp1_rep	CDS	31609773	31609883	.	-	0	Parent=Os04t0622000-00
Chr04	irgsp1_rep	CDS	31609517	31609657	.	-	0	Parent=Os04t0622000-00
Chr04	irgsp1_rep	three_prime_UTR	31609425	31609516	.	-	.	Parent=Os04t0622000-00
Chr04	irgsp1_rep	three_prime_UTR	31609076	31609277	.	-	.	Parent=Os04t0622000-00
Chr04	irgsp1_rep	mRNA	31633831	31636009	.	+	.	ID=Os04t0622400-00;Name=Os04t0622400-00;Locus_id=Os04g0622400;Note=Hypothetical gene.;Transcript_evidence=CT837896 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os04t0622400-00;KEGG=Os04t0622400-00
Chr04	irgsp1_rep	five_prime_UTR	31633831	31633832	.	+	.	Parent=Os04t0622400-00
Chr04	irgsp1_rep	CDS	31633833	31634240	.	+	0	Parent=Os04t0622400-00
Chr04	irgsp1_rep	three_prime_UTR	31634241	31636009	.	+	.	Parent=Os04t0622400-00
Chr04	irgsp1_rep	mRNA	31635735	31639598	.	-	.	ID=Os04t0622501-01;Name=Os04t0622501-01;Locus_id=Os04g0622501;Note=Hypothetical gene.;Transcript_evidence=AK288865 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090078B03;TENOR=Os04t0622501-01;KEGG=Os04t0622501-01
Chr04	irgsp1_rep	five_prime_UTR	31637244	31639598	.	-	.	Parent=Os04t0622501-01
Chr04	irgsp1_rep	CDS	31636899	31637243	.	-	0	Parent=Os04t0622501-01
Chr04	irgsp1_rep	three_prime_UTR	31635735	31636898	.	-	.	Parent=Os04t0622501-01
Chr04	irgsp1_rep	mRNA	31646261	31649090	.	-	.	ID=Os04t0622800-00;Name=Os04t0622800-00;Locus_id=Os04g0622800;Note=Similar to bromodomain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001151218.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Bromodomain (IPR001487);TENOR=Os04t0622800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	31648287	31649090	.	-	0	Parent=Os04t0622800-00
Chr04	irgsp1_rep	CDS	31646781	31646870	.	-	0	Parent=Os04t0622800-00
Chr04	irgsp1_rep	CDS	31646261	31646302	.	-	0	Parent=Os04t0622800-00
Chr04	irgsp1_rep	mRNA	31660819	31662691	.	+	.	ID=Os04t0623066-01;Name=Os04t0623066-01;Locus_id=Os04g0623066;Note=Similar to XA1.;Transcript_evidence=AK105096 (DDBJ%2C Best hit);ORF_evidence=O48647 (UniProt);InterPro=Leucine-rich repeat%2C cysteine-containing subtype (IPR006553);NIAS_FLcDNA=001-100-B05;Expression=AK105096;TENOR=Os04t0623066-01;KEGG=Os04t0623066-01
Chr04	irgsp1_rep	five_prime_UTR	31660819	31660819	.	+	.	Parent=Os04t0623066-01
Chr04	irgsp1_rep	CDS	31660820	31662331	.	+	0	Parent=Os04t0623066-01
Chr04	irgsp1_rep	three_prime_UTR	31662332	31662691	.	+	.	Parent=Os04t0623066-01
Chr04	irgsp1_rep	mRNA	31663355	31665410	.	-	.	ID=Os04t0623100-01;Name=Os04t0623100-01;Locus_id=Os04g0623100;Note=Bromodomain containing protein.;Transcript_evidence=AK067276 (DDBJ%2C Best hit);ORF_evidence=NP_001151218.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Bromodomain (IPR001487);NIAS_FLcDNA=J013097L22;Expression=AK067276;TENOR=Os04t0623100-01;KEGG=Os04t0623100-01
Chr04	irgsp1_rep	five_prime_UTR	31665341	31665410	.	-	.	Parent=Os04t0623100-01
Chr04	irgsp1_rep	CDS	31664180	31665340	.	-	0	Parent=Os04t0623100-01
Chr04	irgsp1_rep	CDS	31663943	31664093	.	-	0	Parent=Os04t0623100-01
Chr04	irgsp1_rep	CDS	31663787	31663845	.	-	2	Parent=Os04t0623100-01
Chr04	irgsp1_rep	three_prime_UTR	31663355	31663786	.	-	.	Parent=Os04t0623100-01
Chr04	irgsp1_rep	mRNA	31666207	31667028	.	-	.	ID=Os04t0623200-01;Name=Os04t0623200-01;Locus_id=Os04g0623200;Note=Similar to H0215F08.2 protein.;Transcript_evidence=AK105231 (DDBJ%2C Best hit),AK105171 (DDBJ%2C Best hit);ORF_evidence=Q01KC8 (UniProt);NIAS_FLcDNA=001-111-F09,001-104-F09;Expression=AK105231;TENOR=Os04t0623200-01;KEGG=Os04t0623200-01
Chr04	irgsp1_rep	five_prime_UTR	31666935	31667028	.	-	.	Parent=Os04t0623200-01
Chr04	irgsp1_rep	CDS	31666494	31666934	.	-	0	Parent=Os04t0623200-01
Chr04	irgsp1_rep	three_prime_UTR	31666207	31666493	.	-	.	Parent=Os04t0623200-01
Chr04	irgsp1_rep	mRNA	31669253	31674595	.	-	.	ID=Os04t0623300-01;Name=Os04t0623300-01;Locus_id=Os04g0623300;RAP-DB Gene Symbol Synonym(s)=PAO3%2C OsPAO3%2C OsAO3%2C AO3;RAP-DB Gene Name Synonym(s)=POLYAMINE OXIDASE 3%2C Polyamine oxidase 3%2C Amine oxidase 3;CGSNL Gene Symbol=PAO3;CGSNL Gene Name=POLYAMINE OXIDASE 3;Oryzabase Gene Symbol Synonym(s)=OsPAO3%2C OsAO3%2C AO3;Oryzabase Gene Name Synonym(s)=Polyamine oxidase 3%2C Amine oxidase 3;Note=Polyamine oxidase%2C Seed germination;Transcript_evidence=AK064902;ORF_evidence=Q7X809;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Flavin amine oxidase (IPR001613),FAD/NAD(P)-binding domain (IPR023753),Amine oxidase (IPR002937);NIAS_FLcDNA=J013000L17;Manual Curation=September 21%2C 2016;Literature_PMID=21796433,27570530;Oryzabase=11404;TENOR=Os04t0623300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31674371	31674595	.	-	.	Parent=Os04t0623300-01
Chr04	irgsp1_rep	five_prime_UTR	31673739	31674048	.	-	.	Parent=Os04t0623300-01
Chr04	irgsp1_rep	CDS	31673726	31673738	.	-	0	Parent=Os04t0623300-01
Chr04	irgsp1_rep	CDS	31671702	31671814	.	-	2	Parent=Os04t0623300-01
Chr04	irgsp1_rep	CDS	31671492	31671580	.	-	0	Parent=Os04t0623300-01
Chr04	irgsp1_rep	CDS	31671274	31671387	.	-	1	Parent=Os04t0623300-01
Chr04	irgsp1_rep	CDS	31671102	31671189	.	-	1	Parent=Os04t0623300-01
Chr04	irgsp1_rep	CDS	31670929	31671014	.	-	0	Parent=Os04t0623300-01
Chr04	irgsp1_rep	CDS	31670741	31670843	.	-	1	Parent=Os04t0623300-01
Chr04	irgsp1_rep	CDS	31670534	31670631	.	-	0	Parent=Os04t0623300-01
Chr04	irgsp1_rep	CDS	31670002	31670431	.	-	1	Parent=Os04t0623300-01
Chr04	irgsp1_rep	CDS	31669592	31669912	.	-	0	Parent=Os04t0623300-01
Chr04	irgsp1_rep	three_prime_UTR	31669253	31669591	.	-	.	Parent=Os04t0623300-01
Chr04	irgsp1_rep	mRNA	31669247	31673471	.	-	.	ID=Os04t0623300-02;Name=Os04t0623300-02;Locus_id=Os04g0623300;CGSNL Gene Symbol=PAO3;CGSNL Gene Name=POLYAMINE OXIDASE 3;Oryzabase Gene Symbol Synonym(s)=OsPAO3%2C OsAO3%2C AO3;Oryzabase Gene Name Synonym(s)=Polyamine oxidase 3%2C Amine oxidase 3;Note=Similar to H0215F08.3 protein.;Transcript_evidence=AK068767 (DDBJ%2C Best hit);ORF_evidence=Q01KC7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Amine oxidase (IPR002937);NIAS_FLcDNA=J013168B07;Oryzabase=11404;Expression=AK068767;TENOR=Os04t0623300-02;KEGG=Os04t0623300-02
Chr04	irgsp1_rep	five_prime_UTR	31671822	31673471	.	-	.	Parent=Os04t0623300-02
Chr04	irgsp1_rep	CDS	31671702	31671821	.	-	0	Parent=Os04t0623300-02
Chr04	irgsp1_rep	CDS	31671492	31671580	.	-	0	Parent=Os04t0623300-02
Chr04	irgsp1_rep	CDS	31671222	31671387	.	-	1	Parent=Os04t0623300-02
Chr04	irgsp1_rep	three_prime_UTR	31671102	31671221	.	-	.	Parent=Os04t0623300-02
Chr04	irgsp1_rep	three_prime_UTR	31670929	31671014	.	-	.	Parent=Os04t0623300-02
Chr04	irgsp1_rep	three_prime_UTR	31670741	31670843	.	-	.	Parent=Os04t0623300-02
Chr04	irgsp1_rep	three_prime_UTR	31670534	31670631	.	-	.	Parent=Os04t0623300-02
Chr04	irgsp1_rep	three_prime_UTR	31670002	31670431	.	-	.	Parent=Os04t0623300-02
Chr04	irgsp1_rep	three_prime_UTR	31669247	31669912	.	-	.	Parent=Os04t0623300-02
Chr04	irgsp1_rep	mRNA	31669220	31671339	.	-	.	ID=Os04t0623300-03;Name=Os04t0623300-03;Locus_id=Os04g0623300;CGSNL Gene Symbol=PAO3;CGSNL Gene Name=POLYAMINE OXIDASE 3;Oryzabase Gene Symbol Synonym(s)=OsPAO3%2C OsAO3%2C AO3;Oryzabase Gene Name Synonym(s)=Polyamine oxidase 3%2C Amine oxidase 3;Note=Similar to H0215F08.3 protein.;Transcript_evidence=AK067242 (DDBJ%2C Best hit);ORF_evidence=Q01KC7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Amine oxidase (IPR002937);NIAS_FLcDNA=J013095J23;Oryzabase=11404;Expression=AK067242;TENOR=Os04t0623300-03;KEGG=Os04t0623300-03
Chr04	irgsp1_rep	five_prime_UTR	31671339	31671339	.	-	.	Parent=Os04t0623300-03
Chr04	irgsp1_rep	CDS	31671274	31671338	.	-	0	Parent=Os04t0623300-03
Chr04	irgsp1_rep	CDS	31671102	31671189	.	-	1	Parent=Os04t0623300-03
Chr04	irgsp1_rep	CDS	31670929	31671014	.	-	0	Parent=Os04t0623300-03
Chr04	irgsp1_rep	CDS	31670741	31670843	.	-	1	Parent=Os04t0623300-03
Chr04	irgsp1_rep	CDS	31670534	31670631	.	-	0	Parent=Os04t0623300-03
Chr04	irgsp1_rep	CDS	31670002	31670431	.	-	1	Parent=Os04t0623300-03
Chr04	irgsp1_rep	CDS	31669592	31669912	.	-	0	Parent=Os04t0623300-03
Chr04	irgsp1_rep	three_prime_UTR	31669220	31669591	.	-	.	Parent=Os04t0623300-03
Chr04	irgsp1_rep	mRNA	31669247	31670579	.	-	.	ID=Os04t0623300-04;Name=Os04t0623300-04;Locus_id=Os04g0623300;CGSNL Gene Symbol=PAO3;CGSNL Gene Name=POLYAMINE OXIDASE 3;Oryzabase Gene Symbol Synonym(s)=OsPAO3%2C OsAO3%2C AO3;Oryzabase Gene Name Synonym(s)=Polyamine oxidase 3%2C Amine oxidase 3;Note=Similar to H0215F08.3 protein.;Transcript_evidence=AK061831 (DDBJ%2C Best hit);ORF_evidence=Q01KC7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Amine oxidase (IPR002937);NIAS_FLcDNA=001-040-D02;Oryzabase=11404;Expression=AK061831;TENOR=Os04t0623300-04;KEGG=Os04t0623300-04 (EC:1.-.-.-)
Chr04	irgsp1_rep	five_prime_UTR	31670578	31670579	.	-	.	Parent=Os04t0623300-04
Chr04	irgsp1_rep	CDS	31670534	31670577	.	-	0	Parent=Os04t0623300-04
Chr04	irgsp1_rep	CDS	31670002	31670431	.	-	1	Parent=Os04t0623300-04
Chr04	irgsp1_rep	CDS	31669592	31669912	.	-	0	Parent=Os04t0623300-04
Chr04	irgsp1_rep	three_prime_UTR	31669247	31669591	.	-	.	Parent=Os04t0623300-04
Chr04	irgsp1_rep	mRNA	31678912	31683890	.	-	.	ID=Os04t0623400-01;Name=Os04t0623400-01;Locus_id=Os04g0623400;Note=Exonuclease domain containing protein.;Transcript_evidence=AK110887 (DDBJ%2C Best hit);ORF_evidence=Q01KC6 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: exonuclease activity (GO:0004527);InterPro=Exonuclease (IPR006055),Ribonuclease H-like (IPR012337),Exonuclease%2C RNase T/DNA polymerase III (IPR013520);NIAS_FLcDNA=002-172-H03;Expression=AK110887;TENOR=Os04t0623400-01;KEGG=Os04t0623400-01
Chr04	irgsp1_rep	five_prime_UTR	31683769	31683890	.	-	.	Parent=Os04t0623400-01
Chr04	irgsp1_rep	five_prime_UTR	31683125	31683167	.	-	.	Parent=Os04t0623400-01
Chr04	irgsp1_rep	CDS	31682745	31683124	.	-	0	Parent=Os04t0623400-01
Chr04	irgsp1_rep	CDS	31682201	31682406	.	-	1	Parent=Os04t0623400-01
Chr04	irgsp1_rep	CDS	31681377	31681546	.	-	2	Parent=Os04t0623400-01
Chr04	irgsp1_rep	CDS	31680354	31680446	.	-	0	Parent=Os04t0623400-01
Chr04	irgsp1_rep	three_prime_UTR	31680343	31680353	.	-	.	Parent=Os04t0623400-01
Chr04	irgsp1_rep	three_prime_UTR	31678912	31679333	.	-	.	Parent=Os04t0623400-01
Chr04	irgsp1_rep	mRNA	31680924	31683890	.	-	.	ID=Os04t0623400-02;Name=Os04t0623400-02;Locus_id=Os04g0623400;Note=Similar to H0215F08.4 protein.;Transcript_evidence=AK100249 (DDBJ%2C Best hit);ORF_evidence=Q01KC6 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: exonuclease activity (GO:0004527);InterPro=Exonuclease (IPR006055),Ribonuclease H-like (IPR012337),Exonuclease%2C RNase T/DNA polymerase III (IPR013520);NIAS_FLcDNA=J023060F18;Expression=AK100249;TENOR=Os04t0623400-02;KEGG=Os04t0623400-02
Chr04	irgsp1_rep	five_prime_UTR	31683769	31683890	.	-	.	Parent=Os04t0623400-02
Chr04	irgsp1_rep	five_prime_UTR	31683125	31683167	.	-	.	Parent=Os04t0623400-02
Chr04	irgsp1_rep	CDS	31682745	31683124	.	-	0	Parent=Os04t0623400-02
Chr04	irgsp1_rep	CDS	31682201	31682406	.	-	1	Parent=Os04t0623400-02
Chr04	irgsp1_rep	CDS	31681350	31681546	.	-	2	Parent=Os04t0623400-02
Chr04	irgsp1_rep	three_prime_UTR	31680924	31681349	.	-	.	Parent=Os04t0623400-02
Chr04	irgsp1_rep	mRNA	31688721	31692490	.	+	.	ID=Os04t0623500-01;Name=Os04t0623500-01;Locus_id=Os04g0623500;CGSNL Gene Symbol=GLO3;CGSNL Gene Name=GLYCOLATE OXIDASE 3;Oryzabase Gene Symbol Synonym(s)=GLO3%2C OsGLO3;Oryzabase Gene Name Synonym(s)=Glycolate oxidase 3;Note=Similar to H0215F08.7 protein.;Transcript_evidence=AK060221 (DDBJ%2C Best hit);ORF_evidence=Q7FAS1-2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FMN-dependent dehydrogenase (IPR000262),FMN-dependent alpha-hydroxy acid dehydrogenase%2C active site (IPR008259),Alpha-hydroxy acid dehydrogenase%2C FMN-dependent (IPR012133),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=001-002-F07;Oryzabase=12474;Expression=AK060221;TENOR=Os04t0623500-01;KEGG=Os04t0623500-01 (EC:1.1.3.15)
Chr04	irgsp1_rep	five_prime_UTR	31688721	31688795	.	+	.	Parent=Os04t0623500-01
Chr04	irgsp1_rep	five_prime_UTR	31689203	31689206	.	+	.	Parent=Os04t0623500-01
Chr04	irgsp1_rep	CDS	31689207	31689346	.	+	0	Parent=Os04t0623500-01
Chr04	irgsp1_rep	CDS	31690319	31690443	.	+	1	Parent=Os04t0623500-01
Chr04	irgsp1_rep	CDS	31690534	31690580	.	+	2	Parent=Os04t0623500-01
Chr04	irgsp1_rep	CDS	31690681	31690758	.	+	0	Parent=Os04t0623500-01
Chr04	irgsp1_rep	CDS	31690851	31690975	.	+	0	Parent=Os04t0623500-01
Chr04	irgsp1_rep	CDS	31691093	31691159	.	+	1	Parent=Os04t0623500-01
Chr04	irgsp1_rep	CDS	31691244	31691306	.	+	0	Parent=Os04t0623500-01
Chr04	irgsp1_rep	CDS	31691434	31691503	.	+	0	Parent=Os04t0623500-01
Chr04	irgsp1_rep	CDS	31691602	31691702	.	+	2	Parent=Os04t0623500-01
Chr04	irgsp1_rep	CDS	31691858	31691956	.	+	0	Parent=Os04t0623500-01
Chr04	irgsp1_rep	CDS	31692058	31692240	.	+	0	Parent=Os04t0623500-01
Chr04	irgsp1_rep	three_prime_UTR	31692241	31692490	.	+	.	Parent=Os04t0623500-01
Chr04	irgsp1_rep	mRNA	31688732	31692502	.	+	.	ID=Os04t0623500-02;Name=Os04t0623500-02;Locus_id=Os04g0623500;CGSNL Gene Symbol=GLO3;CGSNL Gene Name=GLYCOLATE OXIDASE 3;Oryzabase Gene Symbol Synonym(s)=GLO3%2C OsGLO3;Oryzabase Gene Name Synonym(s)=Glycolate oxidase 3;Note=Similar to Peroxisomal (S)-2-hydroxy-acid oxidase GLO3.;Transcript_evidence=AK068638 (DDBJ%2C Best hit);ORF_evidence=Q7FAS1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FMN-dependent dehydrogenase (IPR000262),FMN-dependent alpha-hydroxy acid dehydrogenase%2C active site (IPR008259),Alpha-hydroxy acid dehydrogenase%2C FMN-dependent (IPR012133),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J013156O03;Oryzabase=12474;TENOR=Os04t0623500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31688732	31688795	.	+	.	Parent=Os04t0623500-02
Chr04	irgsp1_rep	five_prime_UTR	31689203	31689206	.	+	.	Parent=Os04t0623500-02
Chr04	irgsp1_rep	CDS	31689207	31689346	.	+	0	Parent=Os04t0623500-02
Chr04	irgsp1_rep	CDS	31690319	31690443	.	+	1	Parent=Os04t0623500-02
Chr04	irgsp1_rep	CDS	31690534	31690580	.	+	2	Parent=Os04t0623500-02
Chr04	irgsp1_rep	CDS	31690681	31690758	.	+	0	Parent=Os04t0623500-02
Chr04	irgsp1_rep	CDS	31690851	31690975	.	+	0	Parent=Os04t0623500-02
Chr04	irgsp1_rep	CDS	31691093	31691159	.	+	1	Parent=Os04t0623500-02
Chr04	irgsp1_rep	CDS	31691244	31691306	.	+	0	Parent=Os04t0623500-02
Chr04	irgsp1_rep	CDS	31691434	31691503	.	+	0	Parent=Os04t0623500-02
Chr04	irgsp1_rep	CDS	31691602	31691702	.	+	2	Parent=Os04t0623500-02
Chr04	irgsp1_rep	CDS	31691858	31691962	.	+	0	Parent=Os04t0623500-02
Chr04	irgsp1_rep	CDS	31692058	31692240	.	+	0	Parent=Os04t0623500-02
Chr04	irgsp1_rep	three_prime_UTR	31692241	31692502	.	+	.	Parent=Os04t0623500-02
Chr04	irgsp1_rep	mRNA	31689551	31691221	.	-	.	ID=Os04t0623550-01;Name=Os04t0623550-01;Locus_id=Os04g0623550;Note=Hypothetical gene.;Transcript_evidence=AK288368 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090025N02;TENOR=Os04t0623550-01;KEGG=Os04t0623550-01
Chr04	irgsp1_rep	five_prime_UTR	31691037	31691221	.	-	.	Parent=Os04t0623550-01
Chr04	irgsp1_rep	CDS	31690809	31691036	.	-	0	Parent=Os04t0623550-01
Chr04	irgsp1_rep	three_prime_UTR	31689551	31690808	.	-	.	Parent=Os04t0623550-01
Chr04	irgsp1_rep	mRNA	31693183	31696603	.	+	.	ID=Os04t0623600-01;Name=Os04t0623600-01;Locus_id=Os04g0623600;CGSNL Gene Symbol=GLO2;CGSNL Gene Name=GLYCOLATE OXIDASE 2;Oryzabase Gene Symbol Synonym(s)=GLO2%2C OsGLO2;Oryzabase Gene Name Synonym(s)=Glycolate oxidase 2;Note=Similar to Peroxisomal (S)-2-hydroxy-acid oxidase GLO2.;Transcript_evidence=AK068129 (DDBJ%2C Best hit);ORF_evidence=Q7XPR4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FMN-dependent dehydrogenase (IPR000262),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J013131A08;Oryzabase=12473;TENOR=Os04t0623600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31693183	31693304	.	+	.	Parent=Os04t0623600-01
Chr04	irgsp1_rep	five_prime_UTR	31694007	31694240	.	+	.	Parent=Os04t0623600-01
Chr04	irgsp1_rep	CDS	31694241	31694537	.	+	0	Parent=Os04t0623600-01
Chr04	irgsp1_rep	three_prime_UTR	31694538	31694776	.	+	.	Parent=Os04t0623600-01
Chr04	irgsp1_rep	three_prime_UTR	31694862	31694986	.	+	.	Parent=Os04t0623600-01
Chr04	irgsp1_rep	three_prime_UTR	31695147	31695213	.	+	.	Parent=Os04t0623600-01
Chr04	irgsp1_rep	three_prime_UTR	31695301	31695363	.	+	.	Parent=Os04t0623600-01
Chr04	irgsp1_rep	three_prime_UTR	31695509	31695578	.	+	.	Parent=Os04t0623600-01
Chr04	irgsp1_rep	three_prime_UTR	31695666	31695850	.	+	.	Parent=Os04t0623600-01
Chr04	irgsp1_rep	three_prime_UTR	31695932	31696036	.	+	.	Parent=Os04t0623600-01
Chr04	irgsp1_rep	three_prime_UTR	31696126	31696603	.	+	.	Parent=Os04t0623600-01
Chr04	irgsp1_rep	mRNA	31694320	31696311	.	-	.	ID=Os04t0623650-00;Name=Os04t0623650-00;Locus_id=Os04g0623650;Note=Hypothetical gene.;Transcript_evidence=BT066752 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0623650-00;KEGG=Os04t0623650-00
Chr04	irgsp1_rep	CDS	31696087	31696311	.	-	0	Parent=Os04t0623650-00
Chr04	irgsp1_rep	three_prime_UTR	31695476	31696086	.	-	.	Parent=Os04t0623650-00
Chr04	irgsp1_rep	three_prime_UTR	31695105	31695383	.	-	.	Parent=Os04t0623650-00
Chr04	irgsp1_rep	three_prime_UTR	31694320	31695044	.	-	.	Parent=Os04t0623650-00
Chr04	irgsp1_rep	mRNA	31697288	31700055	.	+	.	ID=Os04t0623700-01;Name=Os04t0623700-01;Locus_id=Os04g0623700;Note=Similar to Signal recognition particle 14 kDa protein (SRP14).;Transcript_evidence=AK071587 (DDBJ%2C Best hit);ORF_evidence=Q01KC1 (UniProt);GO=Biological Process: SRP-dependent cotranslational protein targeting to membrane (GO:0006614),Biological Process: negative regulation of translational elongation (GO:0045900),Cellular Component: signal recognition particle%2C endoplasmic reticulum targeting (GO:0005786),Cellular Component: signal recognition particle (GO:0048500),Molecular Function: 7S RNA binding (GO:0008312),Molecular Function: endoplasmic reticulum signal peptide binding (GO:0030942);InterPro=Signal recognition particle%2C SRP14 subunit (IPR003210),Signal recognition particle%2C SRP9/SRP14 subunit (IPR009018);NIAS_FLcDNA=J023101P16;Expression=AK071587;TENOR=Os04t0623700-01;KEGG=Os04t0623700-01
Chr04	irgsp1_rep	five_prime_UTR	31697288	31697391	.	+	.	Parent=Os04t0623700-01
Chr04	irgsp1_rep	CDS	31697392	31697394	.	+	0	Parent=Os04t0623700-01
Chr04	irgsp1_rep	CDS	31697684	31697777	.	+	0	Parent=Os04t0623700-01
Chr04	irgsp1_rep	CDS	31697871	31697980	.	+	2	Parent=Os04t0623700-01
Chr04	irgsp1_rep	CDS	31699590	31699781	.	+	0	Parent=Os04t0623700-01
Chr04	irgsp1_rep	three_prime_UTR	31699782	31700055	.	+	.	Parent=Os04t0623700-01
Chr04	irgsp1_rep	mRNA	31700976	31703574	.	+	.	ID=Os04t0623800-01;Name=Os04t0623800-01;Locus_id=Os04g0623800;Oryzabase Gene Symbol Synonym(s)=Amt;Oryzabase Gene Name Synonym(s)=aminomethyltransferase;Note=Similar to Aminomethyltransferase%2C mitochondrial precursor (EC 2.1.2.10) (Glycine cleavage system T protein) (GCVT).;Transcript_evidence=AK099234 (DDBJ%2C Best hit);ORF_evidence=Q01KC0 (UniProt);GO=Biological Process: glycine catabolic process (GO:0006546),Cellular Component: cytoplasm (GO:0005737),Molecular Function: aminomethyltransferase activity (GO:0004047);InterPro=Glycine cleavage T-protein%2C N-terminal (IPR006222),Glycine cleavage system T protein (IPR006223),Glycine cleavage T-protein%2C C-terminal barrel (IPR013977);NIAS_FLcDNA=J013106I02;Oryzabase=19688;Expression=AK099234;TENOR=Os04t0623800-01;KEGG=Os04t0623800-01 (EC:2.1.2.10)
Chr04	irgsp1_rep	five_prime_UTR	31700976	31701019	.	+	.	Parent=Os04t0623800-01
Chr04	irgsp1_rep	CDS	31701020	31701580	.	+	0	Parent=Os04t0623800-01
Chr04	irgsp1_rep	CDS	31702645	31702763	.	+	0	Parent=Os04t0623800-01
Chr04	irgsp1_rep	CDS	31702871	31703417	.	+	1	Parent=Os04t0623800-01
Chr04	irgsp1_rep	three_prime_UTR	31703418	31703574	.	+	.	Parent=Os04t0623800-01
Chr04	irgsp1_rep	mRNA	31701425	31703589	.	+	.	ID=Os04t0623800-02;Name=Os04t0623800-02;Locus_id=Os04g0623800;Oryzabase Gene Symbol Synonym(s)=Amt;Oryzabase Gene Name Synonym(s)=aminomethyltransferase;Note=Similar to H0215F08.10 protein.;Transcript_evidence=AK059270 (DDBJ%2C Best hit);ORF_evidence=Q01KC0 (UniProt);GO=Biological Process: glycine catabolic process (GO:0006546),Cellular Component: cytoplasm (GO:0005737),Molecular Function: aminomethyltransferase activity (GO:0004047);InterPro=Glycine cleavage T-protein%2C N-terminal (IPR006222),Glycine cleavage system T protein (IPR006223),Glycine cleavage T-protein%2C C-terminal barrel (IPR013977);NIAS_FLcDNA=001-025-B08;Oryzabase=19688;Expression=AK059270;TENOR=Os04t0623800-02;KEGG=Os04t0623800-02 (EC:2.1.2.10)
Chr04	irgsp1_rep	CDS	31701425	31701580	.	+	0	Parent=Os04t0623800-02
Chr04	irgsp1_rep	CDS	31702645	31702763	.	+	0	Parent=Os04t0623800-02
Chr04	irgsp1_rep	CDS	31702871	31703417	.	+	1	Parent=Os04t0623800-02
Chr04	irgsp1_rep	three_prime_UTR	31703418	31703589	.	+	.	Parent=Os04t0623800-02
Chr04	irgsp1_rep	mRNA	31712233	31713975	.	-	.	ID=Os04t0623901-01;Name=Os04t0623901-01;Locus_id=Os04g0623901;RAP-DB Gene Symbol Synonym(s)=osa-miR171c;CGSNL Gene Symbol=MIR171C;CGSNL Gene Name=MICRORNA171C;Oryzabase Gene Symbol Synonym(s)=miR171c%2C osa-miR171cosa-miR171c-3p osa-miR171c-5p;Oryzabase Gene Name Synonym(s)=MICRORNA171c%2C osa-miRNA171c%2C delayed heading;Note=Primary microRNA of osa-miR171c%3B Target gene(s): OsHAM transcription factors (Os02g0662700%2C Os02g0663100%2C Os04g0555000%2C Os06g0105350)%2C Control of floral transition%2C Maintenance of SAM indeterminacy;Transcript_evidence=AK242153;ORF_evidence=NONE;NIAS_FLcDNA=J075153O10;Manual Curation=December 26%2C 2017;Literature_PMID=26023934;Oryzabase=12621;TENOR=Os04t0623901-01
Chr04	irgsp1_rep	exon	31712233	31713975	.	-	.	Parent=Os04t0623901-01
Chr04	irgsp1_rep	mRNA	31716399	31719152	.	-	.	ID=Os04t0624000-01;Name=Os04t0624000-01;Locus_id=Os04g0624000;RAP-DB Gene Symbol Synonym(s)=OsATG8b;RAP-DB Gene Name Synonym(s)=autophagy 8b;CGSNL Gene Symbol=ATG8B;CGSNL Gene Name=AUTOPHAGY ASSOCIATED GENE 8B;Oryzabase Gene Symbol Synonym(s)=OsATG8b%2C Atg8b;Oryzabase Gene Name Synonym(s)=autophagy 8b%2C OsAuTophaGy8b%2C AUTOPHAGY RELATED8b;Note=Core autophagy gene%2C Nitrogen use efficiency and yield;Transcript_evidence=AK121268;ORF_evidence=Q7XPR1;InterPro=Ubiquitin-like domain superfamily (IPR029071),Autophagy protein Atg8 ubiquitin-like (IPR004241);NIAS_FLcDNA=J023105G11;Manual Curation=September 27%2C 2019;Literature_PMID=31553788;Oryzabase=9645;Expression=AK121268;TENOR=Os04t0624000-01;KEGG=Os04t0624000-01
Chr04	irgsp1_rep	five_prime_UTR	31718924	31719152	.	-	.	Parent=Os04t0624000-01
Chr04	irgsp1_rep	five_prime_UTR	31718807	31718817	.	-	.	Parent=Os04t0624000-01
Chr04	irgsp1_rep	CDS	31718770	31718806	.	-	0	Parent=Os04t0624000-01
Chr04	irgsp1_rep	CDS	31717647	31717702	.	-	2	Parent=Os04t0624000-01
Chr04	irgsp1_rep	CDS	31717505	31717557	.	-	0	Parent=Os04t0624000-01
Chr04	irgsp1_rep	CDS	31716813	31716931	.	-	1	Parent=Os04t0624000-01
Chr04	irgsp1_rep	CDS	31716573	31716667	.	-	2	Parent=Os04t0624000-01
Chr04	irgsp1_rep	three_prime_UTR	31716399	31716572	.	-	.	Parent=Os04t0624000-01
Chr04	irgsp1_rep	mRNA	31721661	31726923	.	+	.	ID=Os04t0624100-00;Name=Os04t0624100-00;Locus_id=Os04g0624100;Note=Hypothetical conserved gene.;Transcript_evidence=BT009357 (DDBJ);ORF_evidence=A2XXR8 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Tyrosinase (IPR002227),Uncharacterised domain%2C di-copper centre (IPR008922);TENOR=Os04t0624100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31721661	31721663	.	+	.	Parent=Os04t0624100-00
Chr04	irgsp1_rep	CDS	31721664	31721902	.	+	0	Parent=Os04t0624100-00
Chr04	irgsp1_rep	CDS	31722603	31722852	.	+	1	Parent=Os04t0624100-00
Chr04	irgsp1_rep	three_prime_UTR	31722853	31723092	.	+	.	Parent=Os04t0624100-00
Chr04	irgsp1_rep	three_prime_UTR	31726823	31726923	.	+	.	Parent=Os04t0624100-00
Chr04	irgsp1_rep	mRNA	31727770	31728411	.	+	.	ID=Os04t0624400-00;Name=Os04t0624400-00;Locus_id=Os04g0624400;Note=Similar to H0215F08.12 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01KB8 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Tyrosinase (IPR002227),Uncharacterised domain%2C di-copper centre (IPR008922);TENOR=Os04t0624400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	31727770	31728411	.	+	0	Parent=Os04t0624400-00
Chr04	irgsp1_rep	mRNA	31740856	31741449	.	+	.	ID=Os04t0624450-00;Name=Os04t0624450-00;Locus_id=Os04g0624450;Note=Similar to H0215F08.12 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01KB8 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catechol oxidase activity (GO:0004097),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Tyrosinase (IPR002227),Uncharacterised domain%2C di-copper centre (IPR008922),Polyphenol oxidase%2C central domain (IPR022739),Polyphenol oxidase%2C C-terminal (IPR022740);TENOR=Os04t0624450-00
Chr04	irgsp1_rep	CDS	31740856	31741449	.	+	0	Parent=Os04t0624450-00
Chr04	irgsp1_rep	mRNA	31749141	31751604	.	+	.	ID=Os04t0624500-01;Name=Os04t0624500-01;Locus_id=Os04g0624500;CGSNL Gene Symbol=BHC;CGSNL Gene Name=BLACK HULL C;Oryzabase Gene Symbol Synonym(s)=Ph%3DBhc(Po)%2C Bhc%2C Po%2C Ph%2C Bh3%2C PPO%2C Phr1%2C BH1;Oryzabase Gene Name Synonym(s)=Phenol staining%2C polyphenol oxidase%2C PPO enzyme%2C BLACK HULL1;Note=Similar to Polyphenol oxidase (EC 1.10.3.1) (Fragment).;Transcript_evidence=AK108237 (DDBJ%2C Best hit);ORF_evidence=A5X3P0 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catechol oxidase activity (GO:0004097),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Tyrosinase (IPR002227),Uncharacterised domain%2C di-copper centre (IPR008922),Polyphenol oxidase (IPR016213),Polyphenol oxidase%2C central domain (IPR022739),Polyphenol oxidase%2C C-terminal (IPR022740);NIAS_FLcDNA=002-140-G09;Oryzabase=620;Expression=AK108237;TENOR=Os04t0624500-01;KEGG=Os04t0624500-01 (EC:1.10.3.1)
Chr04	irgsp1_rep	five_prime_UTR	31749141	31749156	.	+	.	Parent=Os04t0624500-01
Chr04	irgsp1_rep	CDS	31749157	31749761	.	+	0	Parent=Os04t0624500-01
Chr04	irgsp1_rep	CDS	31750243	31750501	.	+	1	Parent=Os04t0624500-01
Chr04	irgsp1_rep	CDS	31750611	31751459	.	+	0	Parent=Os04t0624500-01
Chr04	irgsp1_rep	three_prime_UTR	31751460	31751604	.	+	.	Parent=Os04t0624500-01
Chr04	irgsp1_rep	mRNA	31751639	31759420	.	-	.	ID=Os04t0624600-01;Name=Os04t0624600-01;Locus_id=Os04g0624600;RAP-DB Gene Symbol Synonym(s)=SSIIIB%2C OsSSIIIb. SSIII-1;RAP-DB Gene Name Synonym(s)=SOLUBLE STARCH SYNTHASE IIIB;CGSNL Gene Symbol=SSIIIB;CGSNL Gene Name=SOLUBLE STARCH SYNTHASE IIIB;Oryzabase Gene Symbol Synonym(s)=OsSSIIIb. SSIII-1;Note=Starch synthase%2C Starch biosynthesis;Transcript_evidence=AF432915,AK122098;ORF_evidence=Q8W1P1,Q0J9Z0;GO=Biological Process: biosynthetic process (GO:0009058),Biological Process: glucan biosynthetic process (GO:0009250),Molecular Function: starch synthase activity (GO:0009011),Molecular Function: starch binding (GO:2001070);InterPro=Glycogen/starch synthase%2C ADP-glucose type (IPR011835),Carbohydrate binding module family 25 (IPR005085),Starch synthase%2C catalytic domain (IPR013534),Glycosyl transferase%2C family 1 (IPR001296);NIAS_FLcDNA=J033125F11;Manual Curation=February 25%2C 2010;Literature_PMID=15232694,15642712,21595523;Oryzabase=8105;Expression=AK122098;TENOR=Os04t0624600-01;KEGG=Os04t0624600-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31759338	31759420	.	-	.	Parent=Os04t0624600-01
Chr04	irgsp1_rep	CDS	31759251	31759337	.	-	0	Parent=Os04t0624600-01
Chr04	irgsp1_rep	CDS	31758745	31758808	.	-	0	Parent=Os04t0624600-01
Chr04	irgsp1_rep	CDS	31757122	31758654	.	-	2	Parent=Os04t0624600-01
Chr04	irgsp1_rep	CDS	31756605	31756819	.	-	2	Parent=Os04t0624600-01
Chr04	irgsp1_rep	CDS	31756163	31756433	.	-	0	Parent=Os04t0624600-01
Chr04	irgsp1_rep	CDS	31755418	31755593	.	-	2	Parent=Os04t0624600-01
Chr04	irgsp1_rep	CDS	31755239	31755346	.	-	0	Parent=Os04t0624600-01
Chr04	irgsp1_rep	CDS	31754709	31754818	.	-	0	Parent=Os04t0624600-01
Chr04	irgsp1_rep	CDS	31754223	31754325	.	-	1	Parent=Os04t0624600-01
Chr04	irgsp1_rep	CDS	31753699	31753869	.	-	0	Parent=Os04t0624600-01
Chr04	irgsp1_rep	CDS	31753432	31753560	.	-	0	Parent=Os04t0624600-01
Chr04	irgsp1_rep	CDS	31753010	31753192	.	-	0	Parent=Os04t0624600-01
Chr04	irgsp1_rep	CDS	31752772	31752903	.	-	0	Parent=Os04t0624600-01
Chr04	irgsp1_rep	CDS	31752567	31752678	.	-	0	Parent=Os04t0624600-01
Chr04	irgsp1_rep	CDS	31752356	31752479	.	-	2	Parent=Os04t0624600-01
Chr04	irgsp1_rep	CDS	31752144	31752276	.	-	1	Parent=Os04t0624600-01
Chr04	irgsp1_rep	three_prime_UTR	31751639	31752143	.	-	.	Parent=Os04t0624600-01
Chr04	irgsp1_rep	mRNA	31751600	31755323	.	-	.	ID=Os04t0624600-02;Name=Os04t0624600-02;Locus_id=Os04g0624600;CGSNL Gene Symbol=SSIIIB;CGSNL Gene Name=SOLUBLE STARCH SYNTHASE IIIB;Oryzabase Gene Symbol Synonym(s)=OsSSIIIb. SSIII-1;Note=Similar to H0215F08.14 protein.;Transcript_evidence=AK059368 (DDBJ%2C Best hit);ORF_evidence=Q01KB6 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058);InterPro=Glycosyl transferase%2C family 1 (IPR001296),Starch synthase%2C catalytic domain (IPR013534);NIAS_FLcDNA=001-026-E10;Oryzabase=8105;Expression=AK059368;TENOR=Os04t0624600-02;KEGG=Os04t0624600-02
Chr04	irgsp1_rep	five_prime_UTR	31755323	31755323	.	-	.	Parent=Os04t0624600-02
Chr04	irgsp1_rep	CDS	31755239	31755322	.	-	0	Parent=Os04t0624600-02
Chr04	irgsp1_rep	CDS	31754709	31754818	.	-	0	Parent=Os04t0624600-02
Chr04	irgsp1_rep	CDS	31754223	31754325	.	-	1	Parent=Os04t0624600-02
Chr04	irgsp1_rep	CDS	31753699	31753869	.	-	0	Parent=Os04t0624600-02
Chr04	irgsp1_rep	CDS	31753432	31753560	.	-	0	Parent=Os04t0624600-02
Chr04	irgsp1_rep	CDS	31753010	31753192	.	-	0	Parent=Os04t0624600-02
Chr04	irgsp1_rep	CDS	31752772	31752903	.	-	0	Parent=Os04t0624600-02
Chr04	irgsp1_rep	CDS	31752567	31752678	.	-	0	Parent=Os04t0624600-02
Chr04	irgsp1_rep	CDS	31752356	31752479	.	-	2	Parent=Os04t0624600-02
Chr04	irgsp1_rep	CDS	31752144	31752276	.	-	1	Parent=Os04t0624600-02
Chr04	irgsp1_rep	three_prime_UTR	31751600	31752143	.	-	.	Parent=Os04t0624600-02
Chr04	irgsp1_rep	mRNA	31752151	31753788	.	+	.	ID=Os04t0624650-00;Name=Os04t0624650-00;Locus_id=Os04g0624650;Note=Hypothetical protein.;Transcript_evidence=BT017185 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0624650-00
Chr04	irgsp1_rep	five_prime_UTR	31752151	31752161	.	+	.	Parent=Os04t0624650-00
Chr04	irgsp1_rep	CDS	31752162	31752275	.	+	0	Parent=Os04t0624650-00
Chr04	irgsp1_rep	CDS	31752355	31752468	.	+	0	Parent=Os04t0624650-00
Chr04	irgsp1_rep	CDS	31752555	31752593	.	+	0	Parent=Os04t0624650-00
Chr04	irgsp1_rep	three_prime_UTR	31752594	31752688	.	+	.	Parent=Os04t0624650-00
Chr04	irgsp1_rep	three_prime_UTR	31752780	31752893	.	+	.	Parent=Os04t0624650-00
Chr04	irgsp1_rep	three_prime_UTR	31752998	31753190	.	+	.	Parent=Os04t0624650-00
Chr04	irgsp1_rep	three_prime_UTR	31753430	31753549	.	+	.	Parent=Os04t0624650-00
Chr04	irgsp1_rep	three_prime_UTR	31753690	31753788	.	+	.	Parent=Os04t0624650-00
Chr04	irgsp1_rep	mRNA	31762674	31763365	.	-	.	ID=Os04t0624701-00;Name=Os04t0624701-00;Locus_id=Os04g0624701;Note=Hypothetical conserved gene.;Transcript_evidence=FP096076 (DDBJ);ORF_evidence=B8AUJ3 (UniProt);TENOR=Os04t0624701-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31763326	31763365	.	-	.	Parent=Os04t0624701-00
Chr04	irgsp1_rep	CDS	31762912	31763325	.	-	0	Parent=Os04t0624701-00
Chr04	irgsp1_rep	three_prime_UTR	31762674	31762911	.	-	.	Parent=Os04t0624701-00
Chr04	irgsp1_rep	mRNA	31764133	31766854	.	-	.	ID=Os04t0624800-01;Name=Os04t0624800-01;Locus_id=Os04g0624800;Note=Aldo/keto reductase domain containing protein.;Transcript_evidence=AK070522 (DDBJ%2C Best hit);ORF_evidence=Q01KD1 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Aldo/keto reductase (IPR001395),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023056J16;Expression=AK070522;TENOR=Os04t0624800-01;KEGG=Os04t0624800-01
Chr04	irgsp1_rep	five_prime_UTR	31766781	31766854	.	-	.	Parent=Os04t0624800-01
Chr04	irgsp1_rep	five_prime_UTR	31765845	31765849	.	-	.	Parent=Os04t0624800-01
Chr04	irgsp1_rep	CDS	31765738	31765844	.	-	0	Parent=Os04t0624800-01
Chr04	irgsp1_rep	CDS	31765549	31765624	.	-	1	Parent=Os04t0624800-01
Chr04	irgsp1_rep	CDS	31765298	31765381	.	-	0	Parent=Os04t0624800-01
Chr04	irgsp1_rep	CDS	31764351	31765214	.	-	0	Parent=Os04t0624800-01
Chr04	irgsp1_rep	three_prime_UTR	31764133	31764350	.	-	.	Parent=Os04t0624800-01
Chr04	irgsp1_rep	mRNA	31767073	31767689	.	+	.	ID=Os04t0624900-01;Name=Os04t0624900-01;Locus_id=Os04g0624900;Note=Conserved hypothetical protein.;Transcript_evidence=AK120897 (DDBJ%2C Best hit);ORF_evidence=B6UCF3 (UniProt);NIAS_FLcDNA=J023030G23;TENOR=Os04t0624900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31767073	31767136	.	+	.	Parent=Os04t0624900-01
Chr04	irgsp1_rep	CDS	31767137	31767376	.	+	0	Parent=Os04t0624900-01
Chr04	irgsp1_rep	three_prime_UTR	31767377	31767689	.	+	.	Parent=Os04t0624900-01
Chr04	irgsp1_rep	mRNA	31769056	31773154	.	-	.	ID=Os04t0625000-01;Name=Os04t0625000-01;Locus_id=Os04g0625000;Note=Conserved hypothetical protein.;Transcript_evidence=AK242742 (DDBJ%2C Best hit);ORF_evidence=A3AXL0 (UniProt);NIAS_FLcDNA=J090049M22;TENOR=Os04t0625000-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31772960	31773154	.	-	.	Parent=Os04t0625000-01
Chr04	irgsp1_rep	CDS	31772582	31772959	.	-	0	Parent=Os04t0625000-01
Chr04	irgsp1_rep	CDS	31771007	31771132	.	-	0	Parent=Os04t0625000-01
Chr04	irgsp1_rep	CDS	31769341	31770927	.	-	0	Parent=Os04t0625000-01
Chr04	irgsp1_rep	three_prime_UTR	31769056	31769340	.	-	.	Parent=Os04t0625000-01
Chr04	irgsp1_rep	mRNA	31777314	31779929	.	+	.	ID=Os04t0625100-01;Name=Os04t0625100-01;Locus_id=Os04g0625100;Note=Similar to OSIGBa0148A10.1 protein.;Transcript_evidence=AK121861 (DDBJ%2C Best hit);ORF_evidence=Q01K97 (UniProt);NIAS_FLcDNA=J033103A14;TENOR=Os04t0625100-01
Chr04	irgsp1_rep	five_prime_UTR	31777314	31777482	.	+	.	Parent=Os04t0625100-01
Chr04	irgsp1_rep	CDS	31777483	31778347	.	+	0	Parent=Os04t0625100-01
Chr04	irgsp1_rep	CDS	31779267	31779929	.	+	2	Parent=Os04t0625100-01
Chr04	irgsp1_rep	mRNA	31777336	31780978	.	+	.	ID=Os04t0625100-02;Name=Os04t0625100-02;Locus_id=Os04g0625100;Note=Similar to OSIGBa0148A10.1 protein.;Transcript_evidence=AK064614 (DDBJ%2C Best hit);ORF_evidence=Q01K97 (UniProt);NIAS_FLcDNA=002-113-C03;Expression=AK064614;TENOR=Os04t0625100-02;KEGG=Os04t0625100-02
Chr04	irgsp1_rep	five_prime_UTR	31777336	31777482	.	+	.	Parent=Os04t0625100-02
Chr04	irgsp1_rep	CDS	31777483	31778347	.	+	0	Parent=Os04t0625100-02
Chr04	irgsp1_rep	CDS	31779267	31779957	.	+	2	Parent=Os04t0625100-02
Chr04	irgsp1_rep	CDS	31780061	31780211	.	+	1	Parent=Os04t0625100-02
Chr04	irgsp1_rep	CDS	31780369	31780431	.	+	0	Parent=Os04t0625100-02
Chr04	irgsp1_rep	CDS	31780670	31780783	.	+	0	Parent=Os04t0625100-02
Chr04	irgsp1_rep	three_prime_UTR	31780784	31780978	.	+	.	Parent=Os04t0625100-02
Chr04	irgsp1_rep	mRNA	31786589	31788246	.	+	.	ID=Os04t0625200-00;Name=Os04t0625200-00;Locus_id=Os04g0625200;Note=Phospholipid/glycerol acyltransferase family protein.;Transcript_evidence=CT829911 (DDBJ%2C Best hit);ORF_evidence=Q01K96 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Phospholipid/glycerol acyltransferase (IPR002123);TENOR=Os04t0625200-00;KEGG=Os04t0625200-00 (EC:2.3.1.51)
Chr04	irgsp1_rep	five_prime_UTR	31786589	31786651	.	+	.	Parent=Os04t0625200-00
Chr04	irgsp1_rep	CDS	31786652	31786921	.	+	0	Parent=Os04t0625200-00
Chr04	irgsp1_rep	CDS	31787009	31787158	.	+	0	Parent=Os04t0625200-00
Chr04	irgsp1_rep	CDS	31787263	31787361	.	+	0	Parent=Os04t0625200-00
Chr04	irgsp1_rep	CDS	31787478	31787570	.	+	0	Parent=Os04t0625200-00
Chr04	irgsp1_rep	CDS	31787665	31787931	.	+	0	Parent=Os04t0625200-00
Chr04	irgsp1_rep	three_prime_UTR	31787932	31788246	.	+	.	Parent=Os04t0625200-00
Chr04	irgsp1_rep	mRNA	31788464	31790490	.	-	.	ID=Os04t0625300-01;Name=Os04t0625300-01;Locus_id=Os04g0625300;Note=Similar to OSIGBa0148A10.3 protein.;Transcript_evidence=AK064498 (DDBJ%2C Best hit);ORF_evidence=Q01K95 (UniProt);NIAS_FLcDNA=002-111-D02;Expression=AK064498;TENOR=Os04t0625300-01;KEGG=Os04t0625300-01
Chr04	irgsp1_rep	CDS	31790170	31790490	.	-	0	Parent=Os04t0625300-01
Chr04	irgsp1_rep	CDS	31789498	31789912	.	-	0	Parent=Os04t0625300-01
Chr04	irgsp1_rep	CDS	31789301	31789391	.	-	2	Parent=Os04t0625300-01
Chr04	irgsp1_rep	CDS	31788995	31789196	.	-	1	Parent=Os04t0625300-01
Chr04	irgsp1_rep	three_prime_UTR	31788809	31788994	.	-	.	Parent=Os04t0625300-01
Chr04	irgsp1_rep	three_prime_UTR	31788464	31788716	.	-	.	Parent=Os04t0625300-01
Chr04	irgsp1_rep	mRNA	31800144	31804447	.	-	.	ID=Os04t0625350-01;Name=Os04t0625350-01;Locus_id=Os04g0625350;Note=Similar to OSIGBa0148A10.3 protein.;Transcript_evidence=AK288848 (DDBJ%2C Best hit);ORF_evidence=Q01K95 (UniProt);InterPro=Ribosome 60S biogenesis N-terminal (IPR021714);NIAS_FLcDNA=J090075F08;TENOR=Os04t0625350-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31800816	31804447	.	-	.	Parent=Os04t0625350-01
Chr04	irgsp1_rep	CDS	31800144	31800815	.	-	0	Parent=Os04t0625350-01
Chr04	irgsp1_rep	mRNA	31801895	31803232	.	+	.	ID=Os04t0625400-00;Name=Os04t0625400-00;Locus_id=Os04g0625400;Note=Similar to OSIGBa0148A10.4 protein.;Transcript_evidence=AK364370 (DDBJ);ORF_evidence=Q01K94 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069);TENOR=Os04t0625400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	31801895	31802161	.	+	0	Parent=Os04t0625400-00
Chr04	irgsp1_rep	CDS	31802507	31803232	.	+	0	Parent=Os04t0625400-00
Chr04	irgsp1_rep	mRNA	31809708	31810835	.	+	.	ID=Os04t0625500-00;Name=Os04t0625500-00;Locus_id=Os04g0625500;Note=Similar to OSIGBa0148A10.5 protein.;Transcript_evidence=EU360467 (DDBJ);ORF_evidence=Q01K93 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);TENOR=Os04t0625500-00
Chr04	irgsp1_rep	CDS	31809708	31810835	.	+	0	Parent=Os04t0625500-00
Chr04	irgsp1_rep	mRNA	31811661	31813399	.	+	.	ID=Os04t0625600-01;Name=Os04t0625600-01;Locus_id=Os04g0625600;Oryzabase Gene Symbol Synonym(s)=OsMB6%2C MB6;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 6%2C MDC protein with a BTB domain 6%2C MDC protein having BTB domain 6;Note=Kelch related domain containing protein.;Transcript_evidence=AK070994 (DDBJ%2C Best hit);ORF_evidence=Q01K92 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);NIAS_FLcDNA=J023080H04;Oryzabase=21200;Expression=AK070994;TENOR=Os04t0625600-01;KEGG=Os04t0625600-01
Chr04	irgsp1_rep	five_prime_UTR	31811661	31811945	.	+	.	Parent=Os04t0625600-01
Chr04	irgsp1_rep	CDS	31811946	31813118	.	+	0	Parent=Os04t0625600-01
Chr04	irgsp1_rep	three_prime_UTR	31813119	31813399	.	+	.	Parent=Os04t0625600-01
Chr04	irgsp1_rep	mRNA	31819464	31823462	.	+	.	ID=Os04t0625800-01;Name=Os04t0625800-01;Locus_id=Os04g0625800;RAP-DB Gene Symbol Synonym(s)=RBP-L;RAP-DB Gene Name Synonym(s)=RNA binding protein -L;CGSNL Gene Symbol=RBP-L;CGSNL Gene Name=RNA-BINDING PROTEIN L;Oryzabase Gene Symbol Synonym(s)=OsRBP-L;Oryzabase Gene Name Synonym(s)=RNA-Binding Protein L;Note=RNA binding protein%2C mRNA localization%2C Regulation of development;Transcript_evidence=AK120834;ORF_evidence=Q0J9Y2;GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA-binding domain superfamily (IPR035979),Nucleotide-binding alpha-beta plait domain superfamily (IPR012677),RNA recognition motif domain (IPR000504);NIAS_FLcDNA=J023019P13;Manual Curation=February 27%2C 2019;Literature_PMID=30659066;Oryzabase=22649;Expression=AK120834;TENOR=Os04t0625800-01;KEGG=Os04t0625800-01;Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737)
Chr04	irgsp1_rep	five_prime_UTR	31819464	31819523	.	+	.	Parent=Os04t0625800-01
Chr04	irgsp1_rep	CDS	31819524	31819868	.	+	0	Parent=Os04t0625800-01
Chr04	irgsp1_rep	CDS	31820394	31820853	.	+	0	Parent=Os04t0625800-01
Chr04	irgsp1_rep	CDS	31822281	31822330	.	+	2	Parent=Os04t0625800-01
Chr04	irgsp1_rep	CDS	31822413	31822543	.	+	0	Parent=Os04t0625800-01
Chr04	irgsp1_rep	CDS	31822649	31822745	.	+	1	Parent=Os04t0625800-01
Chr04	irgsp1_rep	CDS	31822839	31823030	.	+	0	Parent=Os04t0625800-01
Chr04	irgsp1_rep	CDS	31823201	31823203	.	+	0	Parent=Os04t0625800-01
Chr04	irgsp1_rep	three_prime_UTR	31823204	31823462	.	+	.	Parent=Os04t0625800-01
Chr04	irgsp1_rep	mRNA	31819460	31823481	.	+	.	ID=Os04t0625800-02;Name=Os04t0625800-02;Locus_id=Os04g0625800;RAP-DB Gene Symbol Synonym(s)=RBP-L;RAP-DB Gene Name Synonym(s)=RNA binding protein -L;CGSNL Gene Symbol=RBP-L;CGSNL Gene Name=RNA-BINDING PROTEIN L;Oryzabase Gene Symbol Synonym(s)=OsRBP-L;Oryzabase Gene Name Synonym(s)=RNA-Binding Protein L;Note=RNA binding protein%2C mRNA localization%2C Regulation of development;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA-binding domain superfamily (IPR035979),Nucleotide-binding alpha-beta plait domain superfamily (IPR012677),RNA recognition motif domain (IPR000504);Manual Curation=February 28%2C 2019;Literature_PMID=30659066;Oryzabase=22649;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737)
Chr04	irgsp1_rep	five_prime_UTR	31819460	31819523	.	+	.	Parent=Os04t0625800-02
Chr04	irgsp1_rep	CDS	31819524	31819868	.	+	0	Parent=Os04t0625800-02
Chr04	irgsp1_rep	CDS	31820394	31820853	.	+	0	Parent=Os04t0625800-02
Chr04	irgsp1_rep	CDS	31822281	31822330	.	+	2	Parent=Os04t0625800-02
Chr04	irgsp1_rep	CDS	31822413	31822745	.	+	0	Parent=Os04t0625800-02
Chr04	irgsp1_rep	CDS	31822839	31823030	.	+	0	Parent=Os04t0625800-02
Chr04	irgsp1_rep	CDS	31823201	31823203	.	+	0	Parent=Os04t0625800-02
Chr04	irgsp1_rep	three_prime_UTR	31823204	31823481	.	+	.	Parent=Os04t0625800-02
Chr04	irgsp1_rep	mRNA	31820440	31822528	.	-	.	ID=Os04t0625850-00;Name=Os04t0625850-00;Locus_id=Os04g0625850;Note=Hypothetical protein.;Transcript_evidence=BT009377 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0625850-00
Chr04	irgsp1_rep	five_prime_UTR	31822494	31822528	.	-	.	Parent=Os04t0625850-00
Chr04	irgsp1_rep	CDS	31822392	31822493	.	-	0	Parent=Os04t0625850-00
Chr04	irgsp1_rep	CDS	31820743	31820886	.	-	0	Parent=Os04t0625850-00
Chr04	irgsp1_rep	three_prime_UTR	31820440	31820742	.	-	.	Parent=Os04t0625850-00
Chr04	irgsp1_rep	mRNA	31824102	31828850	.	+	.	ID=Os04t0625900-01;Name=Os04t0625900-01;Locus_id=Os04g0625900;Note=Similar to OSIGBa0148A10.9 protein.;Transcript_evidence=AK071028 (DDBJ%2C Best hit);ORF_evidence=Q01K89 (UniProt);InterPro=Ataxin-2%2C C-terminal (IPR009818);NIAS_FLcDNA=J023075E24;TENOR=Os04t0625900-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31824102	31824189	.	+	.	Parent=Os04t0625900-01
Chr04	irgsp1_rep	CDS	31824190	31824418	.	+	0	Parent=Os04t0625900-01
Chr04	irgsp1_rep	CDS	31825260	31825381	.	+	2	Parent=Os04t0625900-01
Chr04	irgsp1_rep	CDS	31825478	31825587	.	+	0	Parent=Os04t0625900-01
Chr04	irgsp1_rep	CDS	31825741	31825805	.	+	1	Parent=Os04t0625900-01
Chr04	irgsp1_rep	CDS	31825897	31826084	.	+	2	Parent=Os04t0625900-01
Chr04	irgsp1_rep	CDS	31826467	31826712	.	+	0	Parent=Os04t0625900-01
Chr04	irgsp1_rep	CDS	31827292	31827393	.	+	0	Parent=Os04t0625900-01
Chr04	irgsp1_rep	CDS	31827564	31827614	.	+	0	Parent=Os04t0625900-01
Chr04	irgsp1_rep	CDS	31828095	31828185	.	+	0	Parent=Os04t0625900-01
Chr04	irgsp1_rep	CDS	31828299	31828453	.	+	2	Parent=Os04t0625900-01
Chr04	irgsp1_rep	three_prime_UTR	31828454	31828850	.	+	.	Parent=Os04t0625900-01
Chr04	irgsp1_rep	mRNA	31828517	31828857	.	-	.	ID=Os04t0625950-00;Name=Os04t0625950-00;Locus_id=Os04g0625950;Note=Non-protein coding transcript.;Transcript_evidence=BT016961 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0625950-00
Chr04	irgsp1_rep	exon	31828517	31828857	.	-	.	Parent=Os04t0625950-00
Chr04	irgsp1_rep	mRNA	31831245	31836454	.	-	.	ID=Os04t0626000-01;Name=Os04t0626000-01;Locus_id=Os04g0626000;Note=Similar to OSIGBa0148A10.10 protein.;Transcript_evidence=AK070199 (DDBJ%2C Best hit);ORF_evidence=Q01K88 (UniProt);GO=Molecular Function: DNA binding (GO:0003677);InterPro=AT hook%2C DNA-binding motif (IPR017956);NIAS_FLcDNA=J023041A15;TENOR=Os04t0626000-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31836193	31836454	.	-	.	Parent=Os04t0626000-01
Chr04	irgsp1_rep	five_prime_UTR	31833791	31833894	.	-	.	Parent=Os04t0626000-01
Chr04	irgsp1_rep	CDS	31832827	31833790	.	-	0	Parent=Os04t0626000-01
Chr04	irgsp1_rep	CDS	31832669	31832722	.	-	2	Parent=Os04t0626000-01
Chr04	irgsp1_rep	CDS	31832416	31832475	.	-	2	Parent=Os04t0626000-01
Chr04	irgsp1_rep	CDS	31832259	31832342	.	-	2	Parent=Os04t0626000-01
Chr04	irgsp1_rep	CDS	31831767	31831814	.	-	2	Parent=Os04t0626000-01
Chr04	irgsp1_rep	CDS	31831636	31831670	.	-	2	Parent=Os04t0626000-01
Chr04	irgsp1_rep	three_prime_UTR	31831245	31831635	.	-	.	Parent=Os04t0626000-01
Chr04	irgsp1_rep	mRNA	31838166	31842050	.	-	.	ID=Os04t0626100-01;Name=Os04t0626100-01;Locus_id=Os04g0626100;Note=HMG-I and HMG-Y%2C DNA-binding domain containing protein.;Transcript_evidence=AK067048 (DDBJ%2C Best hit);ORF_evidence=Q01K87 (UniProt);NIAS_FLcDNA=J013093I16;Expression=AK067048;TENOR=Os04t0626100-01;KEGG=Os04t0626100-01
Chr04	irgsp1_rep	five_prime_UTR	31841830	31842050	.	-	.	Parent=Os04t0626100-01
Chr04	irgsp1_rep	five_prime_UTR	31839116	31839200	.	-	.	Parent=Os04t0626100-01
Chr04	irgsp1_rep	CDS	31838492	31839115	.	-	0	Parent=Os04t0626100-01
Chr04	irgsp1_rep	three_prime_UTR	31838166	31838491	.	-	.	Parent=Os04t0626100-01
Chr04	irgsp1_rep	mRNA	31848105	31852519	.	+	.	ID=Os04t0626300-01;Name=Os04t0626300-01;Locus_id=Os04g0626300;Note=Hypothetical protein.;Transcript_evidence=AK101027 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023150F02;TENOR=Os04t0626300-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31848105	31848305	.	+	.	Parent=Os04t0626300-01
Chr04	irgsp1_rep	five_prime_UTR	31848650	31848932	.	+	.	Parent=Os04t0626300-01
Chr04	irgsp1_rep	five_prime_UTR	31849057	31849935	.	+	.	Parent=Os04t0626300-01
Chr04	irgsp1_rep	five_prime_UTR	31850287	31850471	.	+	.	Parent=Os04t0626300-01
Chr04	irgsp1_rep	five_prime_UTR	31850572	31851177	.	+	.	Parent=Os04t0626300-01
Chr04	irgsp1_rep	CDS	31851178	31851831	.	+	0	Parent=Os04t0626300-01
Chr04	irgsp1_rep	three_prime_UTR	31851832	31852519	.	+	.	Parent=Os04t0626300-01
Chr04	irgsp1_rep	mRNA	31848511	31850847	.	-	.	ID=Os04t0626400-01;Name=Os04t0626400-01;Locus_id=Os04g0626400;Note=Similar to OSIGBa0148A10.12 protein.;Transcript_evidence=AK059851 (DDBJ%2C Best hit),AK100069 (DDBJ%2C Best hit),AK104663 (DDBJ%2C Best hit);ORF_evidence=Q01K86 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Lipocalin/cytosolic fatty-acid binding protein domain (IPR000566),Calycin-like (IPR011038),Calycin (IPR012674),Lipocalin conserved site (IPR022272);NIAS_FLcDNA=006-206-G09,J013164B14,006-311-G03;TENOR=Os04t0626400-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31850733	31850847	.	-	.	Parent=Os04t0626400-01
Chr04	irgsp1_rep	CDS	31850662	31850732	.	-	0	Parent=Os04t0626400-01
Chr04	irgsp1_rep	CDS	31850291	31850432	.	-	1	Parent=Os04t0626400-01
Chr04	irgsp1_rep	CDS	31849634	31849879	.	-	0	Parent=Os04t0626400-01
Chr04	irgsp1_rep	CDS	31849118	31849408	.	-	0	Parent=Os04t0626400-01
Chr04	irgsp1_rep	CDS	31848579	31848857	.	-	0	Parent=Os04t0626400-01
Chr04	irgsp1_rep	three_prime_UTR	31848511	31848578	.	-	.	Parent=Os04t0626400-01
Chr04	irgsp1_rep	mRNA	31848522	31849159	.	-	.	ID=Os04t0626400-02;Name=Os04t0626400-02;Locus_id=Os04g0626400;Note=Similar to OSIGBa0148A10.12 protein.;Transcript_evidence=AK058335 (DDBJ%2C Best hit);ORF_evidence=Q01K86 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Calycin-like (IPR011038),Calycin (IPR012674);NIAS_FLcDNA=001-014-D02;TENOR=Os04t0626400-02;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	31849118	31849159	.	-	0	Parent=Os04t0626400-02
Chr04	irgsp1_rep	CDS	31848579	31848857	.	-	0	Parent=Os04t0626400-02
Chr04	irgsp1_rep	three_prime_UTR	31848522	31848578	.	-	.	Parent=Os04t0626400-02
Chr04	irgsp1_rep	mRNA	31848493	31850790	.	-	.	ID=Os04t0626400-03;Name=Os04t0626400-03;Locus_id=Os04g0626400;Note=Similar to OSIGBa0148A10.12 protein.;Transcript_evidence=AK104062 (DDBJ%2C Best hit);ORF_evidence=Q01K86 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Lipocalin/cytosolic fatty-acid binding protein domain (IPR000566),Calycin-like (IPR011038),Calycin (IPR012674),Lipocalin conserved site (IPR022272);NIAS_FLcDNA=001-025-A06;TENOR=Os04t0626400-03
Chr04	irgsp1_rep	five_prime_UTR	31850733	31850790	.	-	.	Parent=Os04t0626400-03
Chr04	irgsp1_rep	CDS	31850662	31850732	.	-	0	Parent=Os04t0626400-03
Chr04	irgsp1_rep	CDS	31850291	31850432	.	-	1	Parent=Os04t0626400-03
Chr04	irgsp1_rep	CDS	31849634	31849879	.	-	0	Parent=Os04t0626400-03
Chr04	irgsp1_rep	CDS	31849118	31849408	.	-	0	Parent=Os04t0626400-03
Chr04	irgsp1_rep	CDS	31848579	31848857	.	-	0	Parent=Os04t0626400-03
Chr04	irgsp1_rep	three_prime_UTR	31848493	31848578	.	-	.	Parent=Os04t0626400-03
Chr04	irgsp1_rep	mRNA	31855518	31858459	.	+	.	ID=Os04t0626450-01;Name=Os04t0626450-01;Locus_id=Os04g0626450;Note=NB-ARC domain containing protein.;Transcript_evidence=AK241237 (DDBJ%2C Best hit);ORF_evidence=Q01K85 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J065128H08;TENOR=Os04t0626450-01;KEGG=Os04t0626450-01
Chr04	irgsp1_rep	CDS	31855518	31858382	.	+	0	Parent=Os04t0626450-01
Chr04	irgsp1_rep	three_prime_UTR	31858383	31858459	.	+	.	Parent=Os04t0626450-01
Chr04	irgsp1_rep	mRNA	31858607	31867385	.	+	.	ID=Os04t0626500-01;Name=Os04t0626500-01;Locus_id=Os04g0626500;Note=Similar to Disease resistance protein RGA2 (RGA2-blb) (Blight resistance protein RPI).;Transcript_evidence=AK069923 (DDBJ%2C Best hit);ORF_evidence=Q00RL6 (UniProt);NIAS_FLcDNA=J023035K08;TENOR=Os04t0626500-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31858607	31858646	.	+	.	Parent=Os04t0626500-01
Chr04	irgsp1_rep	CDS	31858647	31859423	.	+	0	Parent=Os04t0626500-01
Chr04	irgsp1_rep	three_prime_UTR	31859424	31859428	.	+	.	Parent=Os04t0626500-01
Chr04	irgsp1_rep	three_prime_UTR	31859551	31859665	.	+	.	Parent=Os04t0626500-01
Chr04	irgsp1_rep	three_prime_UTR	31860234	31860424	.	+	.	Parent=Os04t0626500-01
Chr04	irgsp1_rep	three_prime_UTR	31860650	31860764	.	+	.	Parent=Os04t0626500-01
Chr04	irgsp1_rep	three_prime_UTR	31861275	31861369	.	+	.	Parent=Os04t0626500-01
Chr04	irgsp1_rep	three_prime_UTR	31861447	31861667	.	+	.	Parent=Os04t0626500-01
Chr04	irgsp1_rep	three_prime_UTR	31861790	31862291	.	+	.	Parent=Os04t0626500-01
Chr04	irgsp1_rep	three_prime_UTR	31862919	31863069	.	+	.	Parent=Os04t0626500-01
Chr04	irgsp1_rep	three_prime_UTR	31863163	31863257	.	+	.	Parent=Os04t0626500-01
Chr04	irgsp1_rep	three_prime_UTR	31863369	31863498	.	+	.	Parent=Os04t0626500-01
Chr04	irgsp1_rep	three_prime_UTR	31863905	31864017	.	+	.	Parent=Os04t0626500-01
Chr04	irgsp1_rep	three_prime_UTR	31864121	31864194	.	+	.	Parent=Os04t0626500-01
Chr04	irgsp1_rep	three_prime_UTR	31864348	31864656	.	+	.	Parent=Os04t0626500-01
Chr04	irgsp1_rep	three_prime_UTR	31864785	31864879	.	+	.	Parent=Os04t0626500-01
Chr04	irgsp1_rep	three_prime_UTR	31864986	31865080	.	+	.	Parent=Os04t0626500-01
Chr04	irgsp1_rep	three_prime_UTR	31866038	31866163	.	+	.	Parent=Os04t0626500-01
Chr04	irgsp1_rep	three_prime_UTR	31866281	31866366	.	+	.	Parent=Os04t0626500-01
Chr04	irgsp1_rep	three_prime_UTR	31866471	31867385	.	+	.	Parent=Os04t0626500-01
Chr04	irgsp1_rep	mRNA	31875725	31879704	.	-	.	ID=Os04t0626600-01;Name=Os04t0626600-01;Locus_id=Os04g0626600;Oryzabase Gene Symbol Synonym(s)=OsFbox234%2C Os_F0170;Oryzabase Gene Name Synonym(s)=F-box protein 234;Note=Similar to OSIGBa0117N13.2 protein.;Transcript_evidence=AK101137 (DDBJ%2C Best hit);ORF_evidence=Q00RL5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033026J11;Oryzabase=17020;TENOR=Os04t0626600-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31879333	31879704	.	-	.	Parent=Os04t0626600-01
Chr04	irgsp1_rep	CDS	31879275	31879332	.	-	0	Parent=Os04t0626600-01
Chr04	irgsp1_rep	CDS	31878605	31878705	.	-	2	Parent=Os04t0626600-01
Chr04	irgsp1_rep	CDS	31877257	31877943	.	-	0	Parent=Os04t0626600-01
Chr04	irgsp1_rep	three_prime_UTR	31877046	31877256	.	-	.	Parent=Os04t0626600-01
Chr04	irgsp1_rep	three_prime_UTR	31876758	31876913	.	-	.	Parent=Os04t0626600-01
Chr04	irgsp1_rep	three_prime_UTR	31875725	31876407	.	-	.	Parent=Os04t0626600-01
Chr04	irgsp1_rep	mRNA	31880536	31894575	.	-	.	ID=Os04t0626700-01;Name=Os04t0626700-01;Locus_id=Os04g0626700;Note=Similar to OSIGBa0117N13.2 protein.;Transcript_evidence=AK106652 (DDBJ%2C Best hit);ORF_evidence=Q00RL5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-113-F11;Oryzabase=17585;TENOR=Os04t0626700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31894429	31894575	.	-	.	Parent=Os04t0626700-01
Chr04	irgsp1_rep	five_prime_UTR	31894130	31894316	.	-	.	Parent=Os04t0626700-01
Chr04	irgsp1_rep	CDS	31894039	31894129	.	-	0	Parent=Os04t0626700-01
Chr04	irgsp1_rep	CDS	31888067	31888167	.	-	2	Parent=Os04t0626700-01
Chr04	irgsp1_rep	CDS	31882227	31882616	.	-	0	Parent=Os04t0626700-01
Chr04	irgsp1_rep	three_prime_UTR	31881761	31882226	.	-	.	Parent=Os04t0626700-01
Chr04	irgsp1_rep	three_prime_UTR	31881469	31881624	.	-	.	Parent=Os04t0626700-01
Chr04	irgsp1_rep	three_prime_UTR	31880536	31881093	.	-	.	Parent=Os04t0626700-01
Chr04	irgsp1_rep	mRNA	31895293	31900168	.	+	.	ID=Os04t0626900-01;Name=Os04t0626900-01;Locus_id=Os04g0626900;Note=Similar to OSIGBa0117N13.4 protein.;Transcript_evidence=AK070625 (DDBJ%2C Best hit);ORF_evidence=Q00RL3 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989);NIAS_FLcDNA=J023055D06;TENOR=Os04t0626900-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31895293	31895338	.	+	.	Parent=Os04t0626900-01
Chr04	irgsp1_rep	CDS	31895339	31895464	.	+	0	Parent=Os04t0626900-01
Chr04	irgsp1_rep	CDS	31895575	31895721	.	+	0	Parent=Os04t0626900-01
Chr04	irgsp1_rep	CDS	31896052	31896143	.	+	0	Parent=Os04t0626900-01
Chr04	irgsp1_rep	CDS	31896237	31896333	.	+	1	Parent=Os04t0626900-01
Chr04	irgsp1_rep	CDS	31896611	31896654	.	+	0	Parent=Os04t0626900-01
Chr04	irgsp1_rep	CDS	31896786	31896874	.	+	1	Parent=Os04t0626900-01
Chr04	irgsp1_rep	CDS	31897161	31897252	.	+	2	Parent=Os04t0626900-01
Chr04	irgsp1_rep	CDS	31897344	31897490	.	+	0	Parent=Os04t0626900-01
Chr04	irgsp1_rep	CDS	31897575	31897722	.	+	0	Parent=Os04t0626900-01
Chr04	irgsp1_rep	CDS	31897814	31897890	.	+	2	Parent=Os04t0626900-01
Chr04	irgsp1_rep	CDS	31898359	31898430	.	+	0	Parent=Os04t0626900-01
Chr04	irgsp1_rep	CDS	31898614	31898659	.	+	0	Parent=Os04t0626900-01
Chr04	irgsp1_rep	CDS	31898814	31898943	.	+	2	Parent=Os04t0626900-01
Chr04	irgsp1_rep	CDS	31899025	31899184	.	+	1	Parent=Os04t0626900-01
Chr04	irgsp1_rep	CDS	31899284	31899485	.	+	0	Parent=Os04t0626900-01
Chr04	irgsp1_rep	CDS	31899720	31899769	.	+	2	Parent=Os04t0626900-01
Chr04	irgsp1_rep	three_prime_UTR	31899770	31900168	.	+	.	Parent=Os04t0626900-01
Chr04	irgsp1_rep	mRNA	31900282	31907077	.	-	.	ID=Os04t0627000-01;Name=Os04t0627000-01;Locus_id=Os04g0627000;CGSNL Gene Symbol=ROC2;CGSNL Gene Name=RICE OUTMOST CELL-SPECIFIC GENE 2;Oryzabase Gene Symbol Synonym(s)=Roc2(t)%2C Roc2%2C GL2-2;Oryzabase Gene Name Synonym(s)=Rice outmost cell-specific gene 2(t)%2C Rice outermost cell-specific gene-2%2C Homeobox-leucine zipper protein ROC2%2C Homeodomain transcription factor ROC2%2C HD-ZIP protein ROC2%2C Protein RICE OUTERMOST CELL-SPECIFIC 2%2C GLABRA 2-like homeobox protein 2;Note=Similar to Homeobox-leucine zipper protein ROC2.;Transcript_evidence=AK065819 (DDBJ%2C Best hit);ORF_evidence=Q0J9X2 (UniProt);NIAS_FLcDNA=J013043D01;Oryzabase=2863;Expression=AK065819;TENOR=Os04t0627000-01;KEGG=Os04t0627000-01
Chr04	irgsp1_rep	five_prime_UTR	31906585	31907077	.	-	.	Parent=Os04t0627000-01
Chr04	irgsp1_rep	CDS	31906498	31906584	.	-	0	Parent=Os04t0627000-01
Chr04	irgsp1_rep	CDS	31905323	31905385	.	-	0	Parent=Os04t0627000-01
Chr04	irgsp1_rep	CDS	31903050	31903086	.	-	0	Parent=Os04t0627000-01
Chr04	irgsp1_rep	CDS	31902816	31902917	.	-	2	Parent=Os04t0627000-01
Chr04	irgsp1_rep	CDS	31902541	31902671	.	-	2	Parent=Os04t0627000-01
Chr04	irgsp1_rep	three_prime_UTR	31902471	31902540	.	-	.	Parent=Os04t0627000-01
Chr04	irgsp1_rep	three_prime_UTR	31902181	31902355	.	-	.	Parent=Os04t0627000-01
Chr04	irgsp1_rep	three_prime_UTR	31901772	31902043	.	-	.	Parent=Os04t0627000-01
Chr04	irgsp1_rep	three_prime_UTR	31901308	31901403	.	-	.	Parent=Os04t0627000-01
Chr04	irgsp1_rep	three_prime_UTR	31900777	31901203	.	-	.	Parent=Os04t0627000-01
Chr04	irgsp1_rep	three_prime_UTR	31900282	31900669	.	-	.	Parent=Os04t0627000-01
Chr04	irgsp1_rep	mRNA	31900217	31903678	.	-	.	ID=Os04t0627000-02;Name=Os04t0627000-02;Locus_id=Os04g0627000;CGSNL Gene Symbol=ROC2;CGSNL Gene Name=RICE OUTMOST CELL-SPECIFIC GENE 2;Oryzabase Gene Symbol Synonym(s)=Roc2(t)%2C Roc2%2C GL2-2;Oryzabase Gene Name Synonym(s)=Rice outmost cell-specific gene 2(t)%2C Rice outermost cell-specific gene-2%2C Homeobox-leucine zipper protein ROC2%2C Homeodomain transcription factor ROC2%2C HD-ZIP protein ROC2%2C Protein RICE OUTERMOST CELL-SPECIFIC 2%2C GLABRA 2-like homeobox protein 2;Note=Similar to Homeobox-leucine zipper protein ROC2.;Transcript_evidence=AK101563 (DDBJ%2C Best hit);ORF_evidence=Q0J9X2 (UniProt);InterPro=Lipid-binding START (IPR002913),START-like domain (IPR023393);NIAS_FLcDNA=J033050E18;Oryzabase=2863;Expression=AK101563;TENOR=Os04t0627000-02;KEGG=Os04t0627000-02
Chr04	irgsp1_rep	five_prime_UTR	31903677	31903678	.	-	.	Parent=Os04t0627000-02
Chr04	irgsp1_rep	CDS	31903602	31903676	.	-	0	Parent=Os04t0627000-02
Chr04	irgsp1_rep	CDS	31903050	31903508	.	-	0	Parent=Os04t0627000-02
Chr04	irgsp1_rep	CDS	31902816	31902917	.	-	0	Parent=Os04t0627000-02
Chr04	irgsp1_rep	CDS	31902471	31902671	.	-	0	Parent=Os04t0627000-02
Chr04	irgsp1_rep	CDS	31902181	31902355	.	-	0	Parent=Os04t0627000-02
Chr04	irgsp1_rep	CDS	31901772	31902043	.	-	2	Parent=Os04t0627000-02
Chr04	irgsp1_rep	CDS	31901308	31901403	.	-	0	Parent=Os04t0627000-02
Chr04	irgsp1_rep	CDS	31900823	31901203	.	-	0	Parent=Os04t0627000-02
Chr04	irgsp1_rep	three_prime_UTR	31900777	31900822	.	-	.	Parent=Os04t0627000-02
Chr04	irgsp1_rep	three_prime_UTR	31900217	31900669	.	-	.	Parent=Os04t0627000-02
Chr04	irgsp1_rep	mRNA	31902189	31902672	.	+	.	ID=Os04t0627066-00;Name=Os04t0627066-00;Locus_id=Os04g0627066;Note=Non-protein coding transcript.;Transcript_evidence=BT086509 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0627066-00
Chr04	irgsp1_rep	exon	31902189	31902350	.	+	.	Parent=Os04t0627066-00
Chr04	irgsp1_rep	exon	31902457	31902672	.	+	.	Parent=Os04t0627066-00
Chr04	irgsp1_rep	mRNA	31918565	31927669	.	-	.	ID=Os04t0627132-00;Name=Os04t0627132-00;Locus_id=Os04g0627132;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os04t0627132-00
Chr04	irgsp1_rep	CDS	31927573	31927669	.	-	0	Parent=Os04t0627132-00
Chr04	irgsp1_rep	CDS	31919817	31919902	.	-	2	Parent=Os04t0627132-00
Chr04	irgsp1_rep	CDS	31919322	31919399	.	-	0	Parent=Os04t0627132-00
Chr04	irgsp1_rep	CDS	31918565	31918663	.	-	0	Parent=Os04t0627132-00
Chr04	irgsp1_rep	mRNA	31927789	31928733	.	-	.	ID=Os04t0627200-00;Name=Os04t0627200-00;Locus_id=Os04g0627200;CGSNL Gene Symbol=ABCI1;CGSNL Gene Name=ABC TRANSPORTER I FAMILY MEMBER 1;Oryzabase Gene Symbol Synonym(s)=OsABCI1;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCI subgroup member 1;Note=Similar to H0303G06.1 protein.;Transcript_evidence=AK361475 (DDBJ);ORF_evidence=Q00RH1 (UniProt);GO=Biological Process: cytoChrome complex assembly (GO:0017004),Cellular Component: outer membrane-bounded periplasmic space (GO:0030288),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: transporter activity (GO:0005215),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C haem export%2C CcmA (IPR005895);Oryzabase=12024;TENOR=Os04t0627200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31928597	31928733	.	-	.	Parent=Os04t0627200-00
Chr04	irgsp1_rep	CDS	31927922	31928596	.	-	0	Parent=Os04t0627200-00
Chr04	irgsp1_rep	three_prime_UTR	31927789	31927921	.	-	.	Parent=Os04t0627200-00
Chr04	irgsp1_rep	mRNA	31932864	31933709	.	+	.	ID=Os04t0627300-00;Name=Os04t0627300-00;Locus_id=Os04g0627300;Note=Similar to H0303G06.2 protein.;Transcript_evidence=AK248985 (DDBJ);ORF_evidence=Q00RH0 (UniProt);TENOR=Os04t0627300-00;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31932864	31932867	.	+	.	Parent=Os04t0627300-00
Chr04	irgsp1_rep	CDS	31932868	31933173	.	+	0	Parent=Os04t0627300-00
Chr04	irgsp1_rep	CDS	31933290	31933367	.	+	0	Parent=Os04t0627300-00
Chr04	irgsp1_rep	CDS	31933468	31933635	.	+	0	Parent=Os04t0627300-00
Chr04	irgsp1_rep	three_prime_UTR	31933636	31933709	.	+	.	Parent=Os04t0627300-00
Chr04	irgsp1_rep	mRNA	31937356	31939121	.	-	.	ID=Os04t0627400-01;Name=Os04t0627400-01;Locus_id=Os04g0627400;Note=Hypothetical conserved gene.;Transcript_evidence=AK067855 (DDBJ%2C Best hit);ORF_evidence=B8AUT8 (UniProt);NIAS_FLcDNA=J013121P15;TENOR=Os04t0627400-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31938780	31939121	.	-	.	Parent=Os04t0627400-01
Chr04	irgsp1_rep	CDS	31938543	31938779	.	-	0	Parent=Os04t0627400-01
Chr04	irgsp1_rep	three_prime_UTR	31937356	31938542	.	-	.	Parent=Os04t0627400-01
Chr04	irgsp1_rep	mRNA	31957711	31958630	.	-	.	ID=Os04t0627900-01;Name=Os04t0627900-01;Locus_id=Os04g0627900;Oryzabase Gene Symbol Synonym(s)=UNP1;Note=Translation initiation factor SUI1 domain containing protein.;Transcript_evidence=AK108443 (DDBJ%2C Best hit);ORF_evidence=B3GQC3 (UniProt);GO=Biological Process: translational initiation (GO:0006413),Molecular Function: translation initiation factor activity (GO:0003743);InterPro=Translation initiation factor SUI1 (IPR001950);NIAS_FLcDNA=002-143-C01;Oryzabase=16799;Expression=AK108443;TENOR=Os04t0627900-01;KEGG=Os04t0627900-01
Chr04	irgsp1_rep	five_prime_UTR	31958630	31958630	.	-	.	Parent=Os04t0627900-01
Chr04	irgsp1_rep	CDS	31957895	31958629	.	-	0	Parent=Os04t0627900-01
Chr04	irgsp1_rep	three_prime_UTR	31957711	31957894	.	-	.	Parent=Os04t0627900-01
Chr04	irgsp1_rep	mRNA	31959627	31961695	.	-	.	ID=Os04t0628000-01;Name=Os04t0628000-01;Locus_id=Os04g0628000;CGSNL Gene Symbol=ISC40;CGSNL Gene Name=IRON-SULFUR CLUSTER PROTEIN 40;Oryzabase Gene Symbol Synonym(s)=OsISC40;Oryzabase Gene Name Synonym(s)=Iron-sulfur cluster protein 40;Note=Protein of unknown function DUF794%2C plant family protein.;Transcript_evidence=AK064525 (DDBJ%2C Best hit);ORF_evidence=Q00RG5 (UniProt);InterPro=APO protein%2C plant (IPR008512),APO domain (IPR023342);NIAS_FLcDNA=002-111-G08;Oryzabase=13442;Expression=AK064525;TENOR=Os04t0628000-01;KEGG=Os04t0628000-01
Chr04	irgsp1_rep	five_prime_UTR	31961664	31961695	.	-	.	Parent=Os04t0628000-01
Chr04	irgsp1_rep	CDS	31961407	31961663	.	-	0	Parent=Os04t0628000-01
Chr04	irgsp1_rep	CDS	31960328	31961054	.	-	1	Parent=Os04t0628000-01
Chr04	irgsp1_rep	three_prime_UTR	31959627	31960327	.	-	.	Parent=Os04t0628000-01
Chr04	irgsp1_rep	mRNA	31962541	31965035	.	+	.	ID=Os04t0628100-01;Name=Os04t0628100-01;Locus_id=Os04g0628100;CGSNL Gene Symbol=RUBI3;CGSNL Gene Name=RICE POLYUBIQUITIN;Oryzabase Gene Symbol Synonym(s)=rubi3%2C UBQ3;Oryzabase Gene Name Synonym(s)=rice polyubiquitin%2C poly-ubiquitin;Note=Similar to Polyubiquitin.;Transcript_evidence=AK102389 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin (IPR000626),Ubiquitin conserved site (IPR019954),Ubiquitin supergroup (IPR019955),Ubiquitin subgroup (IPR019956);NIAS_FLcDNA=J033092E11;Oryzabase=6414;Expression=AK102389;TENOR=Os04t0628100-01;KEGG=Os04t0628100-01
Chr04	irgsp1_rep	five_prime_UTR	31962541	31963716	.	+	.	Parent=Os04t0628100-01
Chr04	irgsp1_rep	CDS	31963717	31964895	.	+	0	Parent=Os04t0628100-01
Chr04	irgsp1_rep	three_prime_UTR	31964896	31965035	.	+	.	Parent=Os04t0628100-01
Chr04	irgsp1_rep	mRNA	31962543	31965069	.	+	.	ID=Os04t0628100-02;Name=Os04t0628100-02;Locus_id=Os04g0628100;CGSNL Gene Symbol=RUBI3;CGSNL Gene Name=RICE POLYUBIQUITIN;Oryzabase Gene Symbol Synonym(s)=rubi3%2C UBQ3;Oryzabase Gene Name Synonym(s)=rice polyubiquitin%2C poly-ubiquitin;Note=Similar to Polyubiquitin.;Transcript_evidence=AK058319 (DDBJ%2C Best hit);ORF_evidence=Q58G87 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin (IPR000626),Ubiquitin conserved site (IPR019954),Ubiquitin supergroup (IPR019955),Ubiquitin subgroup (IPR019956);NIAS_FLcDNA=001-014-A10;Oryzabase=6414;Expression=AK058319;TENOR=Os04t0628100-02;KEGG=Os04t0628100-02
Chr04	irgsp1_rep	five_prime_UTR	31962543	31962609	.	+	.	Parent=Os04t0628100-02
Chr04	irgsp1_rep	CDS	31963750	31964895	.	+	0	Parent=Os04t0628100-02
Chr04	irgsp1_rep	three_prime_UTR	31964896	31965069	.	+	.	Parent=Os04t0628100-02
Chr04	irgsp1_rep	mRNA	31965780	31973005	.	+	.	ID=Os04t0628200-01;Name=Os04t0628200-01;Locus_id=Os04g0628200;Oryzabase Gene Symbol Synonym(s)=prx56;Oryzabase Gene Name Synonym(s)=class III peroxidase 56;Note=Similar to H0303G06.9 protein.;Transcript_evidence=AK068148 (DDBJ%2C Best hit);ORF_evidence=Q00RG3 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013134G11;Oryzabase=14581;TENOR=Os04t0628200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31965780	31966461	.	+	.	Parent=Os04t0628200-01
Chr04	irgsp1_rep	CDS	31966462	31967086	.	+	0	Parent=Os04t0628200-01
Chr04	irgsp1_rep	CDS	31967246	31968300	.	+	2	Parent=Os04t0628200-01
Chr04	irgsp1_rep	three_prime_UTR	31968301	31968522	.	+	.	Parent=Os04t0628200-01
Chr04	irgsp1_rep	three_prime_UTR	31971206	31971394	.	+	.	Parent=Os04t0628200-01
Chr04	irgsp1_rep	three_prime_UTR	31971617	31971785	.	+	.	Parent=Os04t0628200-01
Chr04	irgsp1_rep	three_prime_UTR	31972407	31973005	.	+	.	Parent=Os04t0628200-01
Chr04	irgsp1_rep	mRNA	31975720	31976388	.	+	.	ID=Os04t0628300-00;Name=Os04t0628300-00;Locus_id=Os04g0628300;Note=Late embryogenesis abundant protein%2C LEA-14 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001053959.1 (RefSeq);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);TENOR=Os04t0628300-00
Chr04	irgsp1_rep	CDS	31975720	31976388	.	+	0	Parent=Os04t0628300-00
Chr04	irgsp1_rep	mRNA	31977273	31981158	.	-	.	ID=Os04t0628400-01;Name=Os04t0628400-01;Locus_id=Os04g0628400;Note=Zinc finger%2C BED-type predicted domain containing protein.;Transcript_evidence=AK066078 (DDBJ%2C Best hit);ORF_evidence=Q3LAG2 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Zinc finger%2C BED-type predicted (IPR003656),HAT dimerisation (IPR008906),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J013050K18;Expression=AK066078;TENOR=Os04t0628400-01;KEGG=Os04t0628400-01
Chr04	irgsp1_rep	five_prime_UTR	31980936	31981158	.	-	.	Parent=Os04t0628400-01
Chr04	irgsp1_rep	five_prime_UTR	31980766	31980857	.	-	.	Parent=Os04t0628400-01
Chr04	irgsp1_rep	CDS	31980438	31980765	.	-	0	Parent=Os04t0628400-01
Chr04	irgsp1_rep	CDS	31978175	31980282	.	-	2	Parent=Os04t0628400-01
Chr04	irgsp1_rep	three_prime_UTR	31978170	31978174	.	-	.	Parent=Os04t0628400-01
Chr04	irgsp1_rep	three_prime_UTR	31977273	31977611	.	-	.	Parent=Os04t0628400-01
Chr04	irgsp1_rep	mRNA	31979826	31981119	.	-	.	ID=Os04t0628400-02;Name=Os04t0628400-02;Locus_id=Os04g0628400;Note=Similar to Transposase-related protein b-gary.;Transcript_evidence=AK072594 (DDBJ%2C Best hit);ORF_evidence=Q3LAG2 (UniProt);GO=Molecular Function: DNA binding (GO:0003677);InterPro=Zinc finger%2C BED-type predicted (IPR003656);NIAS_FLcDNA=J023125K02;TENOR=Os04t0628400-02
Chr04	irgsp1_rep	five_prime_UTR	31980936	31981119	.	-	.	Parent=Os04t0628400-02
Chr04	irgsp1_rep	five_prime_UTR	31980766	31980817	.	-	.	Parent=Os04t0628400-02
Chr04	irgsp1_rep	CDS	31980438	31980765	.	-	0	Parent=Os04t0628400-02
Chr04	irgsp1_rep	CDS	31979826	31980282	.	-	2	Parent=Os04t0628400-02
Chr04	irgsp1_rep	mRNA	31977839	31981082	.	-	.	ID=Os04t0628400-03;Name=Os04t0628400-03;Locus_id=Os04g0628400;Note=Zinc finger%2C BED-type predicted domain containing protein.;Transcript_evidence=AK066646 (DDBJ%2C Best hit);ORF_evidence=Q3LAG2 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Zinc finger%2C BED-type predicted (IPR003656),HAT dimerisation (IPR008906),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J013071L19;Expression=AK066646;TENOR=Os04t0628400-03;KEGG=Os04t0628400-03
Chr04	irgsp1_rep	five_prime_UTR	31980936	31981082	.	-	.	Parent=Os04t0628400-03
Chr04	irgsp1_rep	five_prime_UTR	31980766	31980857	.	-	.	Parent=Os04t0628400-03
Chr04	irgsp1_rep	CDS	31980438	31980765	.	-	0	Parent=Os04t0628400-03
Chr04	irgsp1_rep	CDS	31978175	31980282	.	-	2	Parent=Os04t0628400-03
Chr04	irgsp1_rep	three_prime_UTR	31978170	31978174	.	-	.	Parent=Os04t0628400-03
Chr04	irgsp1_rep	three_prime_UTR	31977839	31978073	.	-	.	Parent=Os04t0628400-03
Chr04	irgsp1_rep	mRNA	31977268	31981092	.	-	.	ID=Os04t0628400-04;Name=Os04t0628400-04;Locus_id=Os04g0628400;Note=Zinc finger%2C BED-type predicted domain containing protein.;Transcript_evidence=AK099285 (DDBJ%2C Best hit);ORF_evidence=Q3LAG2 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Zinc finger%2C BED-type predicted (IPR003656),HAT dimerisation (IPR008906),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J023128I11;TENOR=Os04t0628400-04
Chr04	irgsp1_rep	five_prime_UTR	31980936	31981092	.	-	.	Parent=Os04t0628400-04
Chr04	irgsp1_rep	five_prime_UTR	31980766	31980857	.	-	.	Parent=Os04t0628400-04
Chr04	irgsp1_rep	CDS	31980438	31980765	.	-	0	Parent=Os04t0628400-04
Chr04	irgsp1_rep	CDS	31978175	31980282	.	-	2	Parent=Os04t0628400-04
Chr04	irgsp1_rep	three_prime_UTR	31978170	31978174	.	-	.	Parent=Os04t0628400-04
Chr04	irgsp1_rep	three_prime_UTR	31977268	31977611	.	-	.	Parent=Os04t0628400-04
Chr04	irgsp1_rep	mRNA	31982348	31992462	.	-	.	ID=Os04t0628600-01;Name=Os04t0628600-01;Locus_id=Os04g0628600;Note=Conserved hypothetical protein.;Transcript_evidence=AK121640 (DDBJ%2C Best hit);ORF_evidence=B9FCN5 (UniProt);NIAS_FLcDNA=J033055A13;Expression=AK121640;TENOR=Os04t0628600-01;KEGG=Os04t0628600-01
Chr04	irgsp1_rep	five_prime_UTR	31992264	31992462	.	-	.	Parent=Os04t0628600-01
Chr04	irgsp1_rep	CDS	31992152	31992263	.	-	0	Parent=Os04t0628600-01
Chr04	irgsp1_rep	CDS	31991976	31992064	.	-	2	Parent=Os04t0628600-01
Chr04	irgsp1_rep	CDS	31991304	31991413	.	-	0	Parent=Os04t0628600-01
Chr04	irgsp1_rep	CDS	31991157	31991208	.	-	1	Parent=Os04t0628600-01
Chr04	irgsp1_rep	CDS	31990772	31990860	.	-	0	Parent=Os04t0628600-01
Chr04	irgsp1_rep	CDS	31990543	31990609	.	-	1	Parent=Os04t0628600-01
Chr04	irgsp1_rep	CDS	31990401	31990463	.	-	0	Parent=Os04t0628600-01
Chr04	irgsp1_rep	CDS	31990061	31990231	.	-	0	Parent=Os04t0628600-01
Chr04	irgsp1_rep	CDS	31989854	31989947	.	-	0	Parent=Os04t0628600-01
Chr04	irgsp1_rep	CDS	31989685	31989764	.	-	2	Parent=Os04t0628600-01
Chr04	irgsp1_rep	CDS	31989498	31989570	.	-	0	Parent=Os04t0628600-01
Chr04	irgsp1_rep	CDS	31989377	31989420	.	-	2	Parent=Os04t0628600-01
Chr04	irgsp1_rep	CDS	31989186	31989253	.	-	0	Parent=Os04t0628600-01
Chr04	irgsp1_rep	CDS	31986330	31986415	.	-	1	Parent=Os04t0628600-01
Chr04	irgsp1_rep	CDS	31986101	31986258	.	-	2	Parent=Os04t0628600-01
Chr04	irgsp1_rep	CDS	31984709	31986014	.	-	0	Parent=Os04t0628600-01
Chr04	irgsp1_rep	CDS	31984264	31984550	.	-	2	Parent=Os04t0628600-01
Chr04	irgsp1_rep	CDS	31983951	31984169	.	-	0	Parent=Os04t0628600-01
Chr04	irgsp1_rep	CDS	31983708	31983864	.	-	0	Parent=Os04t0628600-01
Chr04	irgsp1_rep	CDS	31982633	31982937	.	-	2	Parent=Os04t0628600-01
Chr04	irgsp1_rep	three_prime_UTR	31982348	31982632	.	-	.	Parent=Os04t0628600-01
Chr04	irgsp1_rep	mRNA	31995412	31998252	.	+	.	ID=Os04t0628900-00;Name=Os04t0628900-00;Locus_id=Os04g0628900;CGSNL Gene Symbol=CYCU1%3B1;CGSNL Gene Name=CYCLIN-U1-1;Oryzabase Gene Symbol Synonym(s)=CycU1%3B1%2C CycU1%3Bos%3B1%2C Orysa%3BCycU1%3B1%2C OsCYCP2%3B1;Oryzabase Gene Name Synonym(s)=U-type cyclin 1%3B1%2C P-type cyclin 2%3B1;Note=Cyclin-P1-1.;Transcript_evidence=Q0J9W0 (UniProt);ORF_evidence=Q0J9W0 (UniProt);GO=Biological Process: regulation of cyclin-dependent protein kinase activity (GO:0000079),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin P/U (IPR012389),Cyclin-like (IPR013763),Cyclin PHO80-like (IPR013922);Oryzabase=13281;TENOR=Os04t0628900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	31995412	31995818	.	+	0	Parent=Os04t0628900-00
Chr04	irgsp1_rep	CDS	31997865	31998252	.	+	1	Parent=Os04t0628900-00
Chr04	irgsp1_rep	mRNA	31999368	32001257	.	+	.	ID=Os04t0629000-01;Name=Os04t0629000-01;Locus_id=Os04g0629000;Note=Similar to H0303G06.15 protein.;Transcript_evidence=AK120653 (DDBJ%2C Best hit);ORF_evidence=Q25A44 (UniProt);NIAS_FLcDNA=J013157E15;Expression=AK120653;TENOR=Os04t0629000-01;KEGG=Os04t0629000-01
Chr04	irgsp1_rep	five_prime_UTR	31999368	31999571	.	+	.	Parent=Os04t0629000-01
Chr04	irgsp1_rep	CDS	31999572	31999742	.	+	0	Parent=Os04t0629000-01
Chr04	irgsp1_rep	three_prime_UTR	31999743	32000984	.	+	.	Parent=Os04t0629000-01
Chr04	irgsp1_rep	three_prime_UTR	32001073	32001120	.	+	.	Parent=Os04t0629000-01
Chr04	irgsp1_rep	three_prime_UTR	32001224	32001257	.	+	.	Parent=Os04t0629000-01
Chr04	irgsp1_rep	mRNA	31999370	32002679	.	+	.	ID=Os04t0629000-02;Name=Os04t0629000-02;Locus_id=Os04g0629000;Note=Similar to H0303G06.15 protein.;Transcript_evidence=AK059832 (DDBJ%2C Best hit);ORF_evidence=Q25A44 (UniProt);NIAS_FLcDNA=006-206-A09;Expression=AK059832;TENOR=Os04t0629000-02;KEGG=Os04t0629000-02
Chr04	irgsp1_rep	five_prime_UTR	31999370	31999371	.	+	.	Parent=Os04t0629000-02
Chr04	irgsp1_rep	CDS	31999372	31999508	.	+	0	Parent=Os04t0629000-02
Chr04	irgsp1_rep	CDS	31999682	31999721	.	+	1	Parent=Os04t0629000-02
Chr04	irgsp1_rep	CDS	32000751	32000984	.	+	0	Parent=Os04t0629000-02
Chr04	irgsp1_rep	CDS	32001073	32001120	.	+	0	Parent=Os04t0629000-02
Chr04	irgsp1_rep	CDS	32001224	32001280	.	+	0	Parent=Os04t0629000-02
Chr04	irgsp1_rep	CDS	32001363	32001464	.	+	0	Parent=Os04t0629000-02
Chr04	irgsp1_rep	CDS	32001796	32001861	.	+	0	Parent=Os04t0629000-02
Chr04	irgsp1_rep	CDS	32001980	32002081	.	+	0	Parent=Os04t0629000-02
Chr04	irgsp1_rep	CDS	32002154	32002267	.	+	0	Parent=Os04t0629000-02
Chr04	irgsp1_rep	three_prime_UTR	32002268	32002276	.	+	.	Parent=Os04t0629000-02
Chr04	irgsp1_rep	three_prime_UTR	32002476	32002679	.	+	.	Parent=Os04t0629000-02
Chr04	irgsp1_rep	mRNA	31999371	32002716	.	+	.	ID=Os04t0629000-03;Name=Os04t0629000-03;Locus_id=Os04g0629000;Note=Similar to PEX22 (peroxin 22)%3B protein binding.;Transcript_evidence=AK068625 (DDBJ%2C Best hit);ORF_evidence=NP_566696.2 (RefSeq);NIAS_FLcDNA=J013153K03;TENOR=Os04t0629000-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	31999371	31999721	.	+	.	Parent=Os04t0629000-03
Chr04	irgsp1_rep	five_prime_UTR	31999809	32000750	.	+	.	Parent=Os04t0629000-03
Chr04	irgsp1_rep	CDS	32000751	32000984	.	+	0	Parent=Os04t0629000-03
Chr04	irgsp1_rep	CDS	32001073	32001120	.	+	0	Parent=Os04t0629000-03
Chr04	irgsp1_rep	CDS	32001224	32001280	.	+	0	Parent=Os04t0629000-03
Chr04	irgsp1_rep	CDS	32001363	32001464	.	+	0	Parent=Os04t0629000-03
Chr04	irgsp1_rep	CDS	32001796	32001861	.	+	0	Parent=Os04t0629000-03
Chr04	irgsp1_rep	CDS	32001980	32002081	.	+	0	Parent=Os04t0629000-03
Chr04	irgsp1_rep	CDS	32002154	32002267	.	+	0	Parent=Os04t0629000-03
Chr04	irgsp1_rep	three_prime_UTR	32002268	32002276	.	+	.	Parent=Os04t0629000-03
Chr04	irgsp1_rep	three_prime_UTR	32002476	32002716	.	+	.	Parent=Os04t0629000-03
Chr04	irgsp1_rep	mRNA	32002722	32007327	.	-	.	ID=Os04t0629100-01;Name=Os04t0629100-01;Locus_id=Os04g0629100;Oryzabase Gene Symbol Synonym(s)=OsSET21%2C SDG722;Oryzabase Gene Name Synonym(s)=SET protein 21;Note=Similar to H0303G06.16 protein.;Transcript_evidence=AK065665 (DDBJ%2C Best hit);ORF_evidence=Q25A43 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=SET domain (IPR001214),Zinc finger%2C MYND-type (IPR002893);NIAS_FLcDNA=J013041I04;Oryzabase=13386;TENOR=Os04t0629100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	32007082	32007327	.	-	0	Parent=Os04t0629100-01
Chr04	irgsp1_rep	CDS	32006430	32006505	.	-	0	Parent=Os04t0629100-01
Chr04	irgsp1_rep	CDS	32006228	32006313	.	-	2	Parent=Os04t0629100-01
Chr04	irgsp1_rep	CDS	32005821	32006125	.	-	0	Parent=Os04t0629100-01
Chr04	irgsp1_rep	CDS	32005457	32005569	.	-	1	Parent=Os04t0629100-01
Chr04	irgsp1_rep	CDS	32005262	32005293	.	-	2	Parent=Os04t0629100-01
Chr04	irgsp1_rep	CDS	32004765	32004895	.	-	0	Parent=Os04t0629100-01
Chr04	irgsp1_rep	CDS	32004329	32004416	.	-	1	Parent=Os04t0629100-01
Chr04	irgsp1_rep	CDS	32004076	32004124	.	-	0	Parent=Os04t0629100-01
Chr04	irgsp1_rep	CDS	32003899	32003953	.	-	2	Parent=Os04t0629100-01
Chr04	irgsp1_rep	CDS	32003695	32003764	.	-	1	Parent=Os04t0629100-01
Chr04	irgsp1_rep	CDS	32003559	32003628	.	-	0	Parent=Os04t0629100-01
Chr04	irgsp1_rep	CDS	32003379	32003455	.	-	2	Parent=Os04t0629100-01
Chr04	irgsp1_rep	CDS	32003232	32003288	.	-	0	Parent=Os04t0629100-01
Chr04	irgsp1_rep	CDS	32003009	32003122	.	-	0	Parent=Os04t0629100-01
Chr04	irgsp1_rep	three_prime_UTR	32002722	32003008	.	-	.	Parent=Os04t0629100-01
Chr04	irgsp1_rep	mRNA	32002742	32007276	.	-	.	ID=Os04t0629100-02;Name=Os04t0629100-02;Locus_id=Os04g0629100;Oryzabase Gene Symbol Synonym(s)=OsSET21%2C SDG722;Oryzabase Gene Name Synonym(s)=SET protein 21;Note=Similar to H0303G06.16 protein.;Transcript_evidence=AK099320 (DDBJ%2C Best hit);ORF_evidence=Q25A43 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=SET domain (IPR001214),Zinc finger%2C MYND-type (IPR002893);NIAS_FLcDNA=J033008O14;Oryzabase=13386;TENOR=Os04t0629100-02
Chr04	irgsp1_rep	CDS	32007082	32007276	.	-	0	Parent=Os04t0629100-02
Chr04	irgsp1_rep	CDS	32006430	32006505	.	-	0	Parent=Os04t0629100-02
Chr04	irgsp1_rep	CDS	32006228	32006313	.	-	2	Parent=Os04t0629100-02
Chr04	irgsp1_rep	CDS	32005821	32006125	.	-	0	Parent=Os04t0629100-02
Chr04	irgsp1_rep	CDS	32005457	32005569	.	-	1	Parent=Os04t0629100-02
Chr04	irgsp1_rep	CDS	32005262	32005293	.	-	2	Parent=Os04t0629100-02
Chr04	irgsp1_rep	CDS	32004765	32004895	.	-	0	Parent=Os04t0629100-02
Chr04	irgsp1_rep	CDS	32004329	32004416	.	-	1	Parent=Os04t0629100-02
Chr04	irgsp1_rep	CDS	32004076	32004124	.	-	0	Parent=Os04t0629100-02
Chr04	irgsp1_rep	CDS	32003899	32003953	.	-	2	Parent=Os04t0629100-02
Chr04	irgsp1_rep	CDS	32003695	32003764	.	-	1	Parent=Os04t0629100-02
Chr04	irgsp1_rep	CDS	32003559	32003628	.	-	0	Parent=Os04t0629100-02
Chr04	irgsp1_rep	CDS	32003379	32003455	.	-	2	Parent=Os04t0629100-02
Chr04	irgsp1_rep	CDS	32003232	32003288	.	-	0	Parent=Os04t0629100-02
Chr04	irgsp1_rep	CDS	32003009	32003122	.	-	0	Parent=Os04t0629100-02
Chr04	irgsp1_rep	three_prime_UTR	32002742	32003008	.	-	.	Parent=Os04t0629100-02
Chr04	irgsp1_rep	mRNA	32008449	32009263	.	+	.	ID=Os04t0629200-01;Name=Os04t0629200-01;Locus_id=Os04g0629200;Oryzabase Gene Symbol Synonym(s)=OsSCL2;Oryzabase Gene Name Synonym(s)=stellacyanin-like protein 2;Note=Cupredoxin domain containing protein.;Transcript_evidence=AK243623 (DDBJ%2C Best hit);ORF_evidence=Q25A48 (UniProt);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Blue (type 1) copper domain (IPR000923),Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);NIAS_FLcDNA=J100086C21;Oryzabase=9786;TENOR=Os04t0629200-01;KEGG=Os04t0629200-01
Chr04	irgsp1_rep	five_prime_UTR	32008449	32008512	.	+	.	Parent=Os04t0629200-01
Chr04	irgsp1_rep	CDS	32008513	32008678	.	+	0	Parent=Os04t0629200-01
Chr04	irgsp1_rep	CDS	32008769	32009100	.	+	2	Parent=Os04t0629200-01
Chr04	irgsp1_rep	three_prime_UTR	32009101	32009263	.	+	.	Parent=Os04t0629200-01
Chr04	irgsp1_rep	mRNA	32013173	32016407	.	-	.	ID=Os04t0629300-01;Name=Os04t0629300-01;Locus_id=Os04g0629300;Oryzabase Gene Symbol Synonym(s)=SnRK2;Oryzabase Gene Name Synonym(s)=SnRK2 subfamily protein%2C SNF1-related protein kinase 2 subfamily protein;Note=Similar to H0303G06.18 protein.;Transcript_evidence=AK065939 (DDBJ%2C Best hit);ORF_evidence=Q25A47 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP binding (GO:0005524);InterPro=SNF2-related (IPR000330),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J013050N06;Oryzabase=22001;TENOR=Os04t0629300-01
Chr04	irgsp1_rep	five_prime_UTR	32016229	32016407	.	-	.	Parent=Os04t0629300-01
Chr04	irgsp1_rep	five_prime_UTR	32015315	32015463	.	-	.	Parent=Os04t0629300-01
Chr04	irgsp1_rep	CDS	32014819	32015314	.	-	0	Parent=Os04t0629300-01
Chr04	irgsp1_rep	CDS	32014574	32014726	.	-	2	Parent=Os04t0629300-01
Chr04	irgsp1_rep	CDS	32014233	32014408	.	-	2	Parent=Os04t0629300-01
Chr04	irgsp1_rep	CDS	32014075	32014146	.	-	0	Parent=Os04t0629300-01
Chr04	irgsp1_rep	CDS	32013910	32013984	.	-	0	Parent=Os04t0629300-01
Chr04	irgsp1_rep	CDS	32013173	32013825	.	-	0	Parent=Os04t0629300-01
Chr04	irgsp1_rep	mRNA	32009536	32016403	.	-	.	ID=Os04t0629300-02;Name=Os04t0629300-02;Locus_id=Os04g0629300;Oryzabase Gene Symbol Synonym(s)=SnRK2;Oryzabase Gene Name Synonym(s)=SnRK2 subfamily protein%2C SNF1-related protein kinase 2 subfamily protein;Note=DEAD-like helicase%2C N-terminal domain containing protein.;Transcript_evidence=AK102284 (DDBJ%2C Best hit);ORF_evidence=Q25A47 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: helicase activity (GO:0004386),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: zinc ion binding (GO:0008270);InterPro=SNF2-related (IPR000330),Helicase%2C C-terminal (IPR001650),Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),DEAD-like helicase (IPR014001),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J033089H07;Oryzabase=22001;Expression=AK102284;TENOR=Os04t0629300-02;KEGG=Os04t0629300-02
Chr04	irgsp1_rep	five_prime_UTR	32016229	32016403	.	-	.	Parent=Os04t0629300-02
Chr04	irgsp1_rep	five_prime_UTR	32015315	32015463	.	-	.	Parent=Os04t0629300-02
Chr04	irgsp1_rep	CDS	32014819	32015314	.	-	0	Parent=Os04t0629300-02
Chr04	irgsp1_rep	CDS	32014574	32014726	.	-	2	Parent=Os04t0629300-02
Chr04	irgsp1_rep	CDS	32014233	32014408	.	-	2	Parent=Os04t0629300-02
Chr04	irgsp1_rep	CDS	32014075	32014146	.	-	0	Parent=Os04t0629300-02
Chr04	irgsp1_rep	CDS	32013910	32013984	.	-	0	Parent=Os04t0629300-02
Chr04	irgsp1_rep	CDS	32012817	32013825	.	-	0	Parent=Os04t0629300-02
Chr04	irgsp1_rep	CDS	32012134	32012264	.	-	2	Parent=Os04t0629300-02
Chr04	irgsp1_rep	CDS	32011442	32011663	.	-	0	Parent=Os04t0629300-02
Chr04	irgsp1_rep	CDS	32010675	32011181	.	-	0	Parent=Os04t0629300-02
Chr04	irgsp1_rep	CDS	32010376	32010585	.	-	0	Parent=Os04t0629300-02
Chr04	irgsp1_rep	CDS	32009856	32009960	.	-	0	Parent=Os04t0629300-02
Chr04	irgsp1_rep	three_prime_UTR	32009536	32009855	.	-	.	Parent=Os04t0629300-02
Chr04	irgsp1_rep	mRNA	32017656	32018383	.	-	.	ID=Os04t0629400-01;Name=Os04t0629400-01;Locus_id=Os04g0629400;Note=Similar to H0303G06.19 protein.;Transcript_evidence=AK109572 (DDBJ%2C Best hit);ORF_evidence=Q25A42 (UniProt);NIAS_FLcDNA=002-132-E03;Expression=AK109572;TENOR=Os04t0629400-01;KEGG=Os04t0629400-01
Chr04	irgsp1_rep	five_prime_UTR	32018383	32018383	.	-	.	Parent=Os04t0629400-01
Chr04	irgsp1_rep	CDS	32017759	32018382	.	-	0	Parent=Os04t0629400-01
Chr04	irgsp1_rep	three_prime_UTR	32017656	32017758	.	-	.	Parent=Os04t0629400-01
Chr04	irgsp1_rep	mRNA	32019515	32022508	.	-	.	ID=Os04t0629500-01;Name=Os04t0629500-01;Locus_id=Os04g0629500;Oryzabase Gene Symbol Synonym(s)=OsTrx15;Oryzabase Gene Name Synonym(s)=Thioredoxin 15;Note=Similar to Thioredoxin h.;Transcript_evidence=AK072821 (DDBJ%2C Best hit);ORF_evidence=Q25A42 (UniProt);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Thioredoxin (IPR005746),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766);NIAS_FLcDNA=J023139A03;Oryzabase=10886;Expression=AK072821;TENOR=Os04t0629500-01;KEGG=Os04t0629500-01
Chr04	irgsp1_rep	five_prime_UTR	32020874	32022508	.	-	.	Parent=Os04t0629500-01
Chr04	irgsp1_rep	CDS	32020766	32020873	.	-	0	Parent=Os04t0629500-01
Chr04	irgsp1_rep	CDS	32020227	32020349	.	-	0	Parent=Os04t0629500-01
Chr04	irgsp1_rep	CDS	32019688	32019858	.	-	0	Parent=Os04t0629500-01
Chr04	irgsp1_rep	three_prime_UTR	32019515	32019687	.	-	.	Parent=Os04t0629500-01
Chr04	irgsp1_rep	mRNA	32019411	32021017	.	-	.	ID=Os04t0629500-02;Name=Os04t0629500-02;Locus_id=Os04g0629500;Oryzabase Gene Symbol Synonym(s)=OsTrx15;Oryzabase Gene Name Synonym(s)=Thioredoxin 15;Note=Similar to Thioredoxin h.;Transcript_evidence=AK121437 (DDBJ%2C Best hit),AK103985 (DDBJ%2C Best hit);ORF_evidence=Q25A42 (UniProt);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Thioredoxin (IPR005746),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766);NIAS_FLcDNA=J023140C07,001-017-G11;Oryzabase=10886;Expression=AK121437;TENOR=Os04t0629500-02;KEGG=Os04t0629500-02
Chr04	irgsp1_rep	five_prime_UTR	32020874	32021017	.	-	.	Parent=Os04t0629500-02
Chr04	irgsp1_rep	CDS	32020766	32020873	.	-	0	Parent=Os04t0629500-02
Chr04	irgsp1_rep	CDS	32020227	32020349	.	-	0	Parent=Os04t0629500-02
Chr04	irgsp1_rep	CDS	32019688	32019858	.	-	0	Parent=Os04t0629500-02
Chr04	irgsp1_rep	three_prime_UTR	32019411	32019687	.	-	.	Parent=Os04t0629500-02
Chr04	irgsp1_rep	mRNA	32023858	32026112	.	+	.	ID=Os04t0629600-01;Name=Os04t0629600-01;Locus_id=Os04g0629600;Note=Conserved hypothetical protein.;Transcript_evidence=AK099596 (DDBJ%2C Best hit);ORF_evidence=NP_001173508.1 (RefSeq);NIAS_FLcDNA=J013045D06;TENOR=Os04t0629600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32023858	32023978	.	+	.	Parent=Os04t0629600-01
Chr04	irgsp1_rep	five_prime_UTR	32024094	32025145	.	+	.	Parent=Os04t0629600-01
Chr04	irgsp1_rep	CDS	32025146	32025244	.	+	0	Parent=Os04t0629600-01
Chr04	irgsp1_rep	three_prime_UTR	32025245	32026112	.	+	.	Parent=Os04t0629600-01
Chr04	irgsp1_rep	mRNA	32023895	32032483	.	+	.	ID=Os04t0629600-02;Name=Os04t0629600-02;Locus_id=Os04g0629600;Note=Similar to Transposase of Tn10 [Oryza sativa (japonica cultivar-group)].;Transcript_evidence=AK070709 (DDBJ%2C Best hit);ORF_evidence=NP_001173508.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Zinc finger%2C CCHC retroviral-type (IPR013084);NIAS_FLcDNA=J023062I06;Expression=AK070709;TENOR=Os04t0629600-02;KEGG=Os04t0629600-02
Chr04	irgsp1_rep	five_prime_UTR	32023895	32023953	.	+	.	Parent=Os04t0629600-02
Chr04	irgsp1_rep	five_prime_UTR	32024094	32024501	.	+	.	Parent=Os04t0629600-02
Chr04	irgsp1_rep	five_prime_UTR	32024578	32025145	.	+	.	Parent=Os04t0629600-02
Chr04	irgsp1_rep	CDS	32025146	32025236	.	+	0	Parent=Os04t0629600-02
Chr04	irgsp1_rep	CDS	32027178	32028029	.	+	2	Parent=Os04t0629600-02
Chr04	irgsp1_rep	CDS	32032283	32032311	.	+	2	Parent=Os04t0629600-02
Chr04	irgsp1_rep	three_prime_UTR	32032312	32032483	.	+	.	Parent=Os04t0629600-02
Chr04	irgsp1_rep	mRNA	32033904	32039009	.	-	.	ID=Os04t0629700-01;Name=Os04t0629700-01;Locus_id=Os04g0629700;Note=Similar to Kinesin-1 (Kinesin-like protein A).;Transcript_evidence=AK122184 (DDBJ%2C Best hit);ORF_evidence=Q25A41 (UniProt);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752),Kinesin%2C motor region%2C conserved site (IPR019821);NIAS_FLcDNA=J033150E23;Expression=AK122184;TENOR=Os04t0629700-01;KEGG=Os04t0629700-01
Chr04	irgsp1_rep	five_prime_UTR	32038727	32039009	.	-	.	Parent=Os04t0629700-01
Chr04	irgsp1_rep	CDS	32038691	32038726	.	-	0	Parent=Os04t0629700-01
Chr04	irgsp1_rep	CDS	32038346	32038579	.	-	0	Parent=Os04t0629700-01
Chr04	irgsp1_rep	CDS	32038113	32038257	.	-	0	Parent=Os04t0629700-01
Chr04	irgsp1_rep	CDS	32037823	32037932	.	-	2	Parent=Os04t0629700-01
Chr04	irgsp1_rep	CDS	32037594	32037713	.	-	0	Parent=Os04t0629700-01
Chr04	irgsp1_rep	CDS	32037303	32037506	.	-	0	Parent=Os04t0629700-01
Chr04	irgsp1_rep	CDS	32037003	32037212	.	-	0	Parent=Os04t0629700-01
Chr04	irgsp1_rep	CDS	32036853	32036927	.	-	0	Parent=Os04t0629700-01
Chr04	irgsp1_rep	CDS	32036624	32036770	.	-	0	Parent=Os04t0629700-01
Chr04	irgsp1_rep	CDS	32036344	32036485	.	-	0	Parent=Os04t0629700-01
Chr04	irgsp1_rep	CDS	32036125	32036234	.	-	2	Parent=Os04t0629700-01
Chr04	irgsp1_rep	CDS	32035614	32035772	.	-	0	Parent=Os04t0629700-01
Chr04	irgsp1_rep	CDS	32035334	32035536	.	-	0	Parent=Os04t0629700-01
Chr04	irgsp1_rep	CDS	32034965	32035046	.	-	1	Parent=Os04t0629700-01
Chr04	irgsp1_rep	CDS	32034705	32034809	.	-	0	Parent=Os04t0629700-01
Chr04	irgsp1_rep	CDS	32034519	32034623	.	-	0	Parent=Os04t0629700-01
Chr04	irgsp1_rep	CDS	32034247	32034426	.	-	0	Parent=Os04t0629700-01
Chr04	irgsp1_rep	three_prime_UTR	32033904	32034246	.	-	.	Parent=Os04t0629700-01
Chr04	irgsp1_rep	mRNA	32033925	32038725	.	-	.	ID=Os04t0629700-02;Name=Os04t0629700-02;Locus_id=Os04g0629700;Note=Similar to H0303G06.20 protein.;Transcript_evidence=AK064973 (DDBJ%2C Best hit);ORF_evidence=Q25A41 (UniProt);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752),Kinesin%2C motor region%2C conserved site (IPR019821);NIAS_FLcDNA=J013001B18;Expression=AK064973;TENOR=Os04t0629700-02;KEGG=Os04t0629700-02
Chr04	irgsp1_rep	five_prime_UTR	32038724	32038725	.	-	.	Parent=Os04t0629700-02
Chr04	irgsp1_rep	CDS	32038691	32038723	.	-	0	Parent=Os04t0629700-02
Chr04	irgsp1_rep	CDS	32038346	32038579	.	-	0	Parent=Os04t0629700-02
Chr04	irgsp1_rep	CDS	32038113	32038257	.	-	0	Parent=Os04t0629700-02
Chr04	irgsp1_rep	CDS	32037823	32037932	.	-	2	Parent=Os04t0629700-02
Chr04	irgsp1_rep	CDS	32037594	32037713	.	-	0	Parent=Os04t0629700-02
Chr04	irgsp1_rep	CDS	32037303	32037506	.	-	0	Parent=Os04t0629700-02
Chr04	irgsp1_rep	CDS	32036853	32037212	.	-	0	Parent=Os04t0629700-02
Chr04	irgsp1_rep	CDS	32036624	32036770	.	-	0	Parent=Os04t0629700-02
Chr04	irgsp1_rep	CDS	32036344	32036485	.	-	0	Parent=Os04t0629700-02
Chr04	irgsp1_rep	CDS	32036125	32036234	.	-	2	Parent=Os04t0629700-02
Chr04	irgsp1_rep	CDS	32035614	32035772	.	-	0	Parent=Os04t0629700-02
Chr04	irgsp1_rep	CDS	32035334	32035536	.	-	0	Parent=Os04t0629700-02
Chr04	irgsp1_rep	CDS	32034965	32035046	.	-	1	Parent=Os04t0629700-02
Chr04	irgsp1_rep	CDS	32034705	32034809	.	-	0	Parent=Os04t0629700-02
Chr04	irgsp1_rep	CDS	32034519	32034623	.	-	0	Parent=Os04t0629700-02
Chr04	irgsp1_rep	CDS	32034247	32034426	.	-	0	Parent=Os04t0629700-02
Chr04	irgsp1_rep	three_prime_UTR	32033925	32034246	.	-	.	Parent=Os04t0629700-02
Chr04	irgsp1_rep	mRNA	32033971	32036220	.	-	.	ID=Os04t0629700-03;Name=Os04t0629700-03;Locus_id=Os04g0629700;Note=Similar to H0303G06.20 protein.;Transcript_evidence=AK061702 (DDBJ%2C Best hit),AK119202 (DDBJ%2C Best hit);ORF_evidence=Q25A41 (UniProt);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752),Kinesin%2C motor region%2C conserved site (IPR019821);NIAS_FLcDNA=001-037-E02,001-041-D06;Expression=AK061702;TENOR=Os04t0629700-03;KEGG=Os04t0629700-03
Chr04	irgsp1_rep	CDS	32036125	32036220	.	-	0	Parent=Os04t0629700-03
Chr04	irgsp1_rep	CDS	32035614	32035772	.	-	0	Parent=Os04t0629700-03
Chr04	irgsp1_rep	CDS	32035334	32035536	.	-	0	Parent=Os04t0629700-03
Chr04	irgsp1_rep	CDS	32034965	32035046	.	-	1	Parent=Os04t0629700-03
Chr04	irgsp1_rep	CDS	32034705	32034809	.	-	0	Parent=Os04t0629700-03
Chr04	irgsp1_rep	CDS	32034519	32034623	.	-	0	Parent=Os04t0629700-03
Chr04	irgsp1_rep	CDS	32034247	32034426	.	-	0	Parent=Os04t0629700-03
Chr04	irgsp1_rep	three_prime_UTR	32033971	32034246	.	-	.	Parent=Os04t0629700-03
Chr04	irgsp1_rep	mRNA	32034252	32038438	.	+	.	ID=Os04t0629850-00;Name=Os04t0629850-00;Locus_id=Os04g0629850;Note=Non-protein coding transcript.;Transcript_evidence=tplb0029c11 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os04t0629850-00
Chr04	irgsp1_rep	exon	32034252	32034438	.	+	.	Parent=Os04t0629850-00
Chr04	irgsp1_rep	exon	32034528	32034622	.	+	.	Parent=Os04t0629850-00
Chr04	irgsp1_rep	exon	32034704	32034806	.	+	.	Parent=Os04t0629850-00
Chr04	irgsp1_rep	exon	32034962	32035031	.	+	.	Parent=Os04t0629850-00
Chr04	irgsp1_rep	exon	32035325	32035545	.	+	.	Parent=Os04t0629850-00
Chr04	irgsp1_rep	exon	32035624	32035767	.	+	.	Parent=Os04t0629850-00
Chr04	irgsp1_rep	exon	32036120	32036208	.	+	.	Parent=Os04t0629850-00
Chr04	irgsp1_rep	exon	32036320	32036442	.	+	.	Parent=Os04t0629850-00
Chr04	irgsp1_rep	exon	32036598	32036778	.	+	.	Parent=Os04t0629850-00
Chr04	irgsp1_rep	exon	32036936	32037210	.	+	.	Parent=Os04t0629850-00
Chr04	irgsp1_rep	exon	32037308	32037509	.	+	.	Parent=Os04t0629850-00
Chr04	irgsp1_rep	exon	32037700	32037938	.	+	.	Parent=Os04t0629850-00
Chr04	irgsp1_rep	exon	32038043	32038249	.	+	.	Parent=Os04t0629850-00
Chr04	irgsp1_rep	exon	32038339	32038438	.	+	.	Parent=Os04t0629850-00
Chr04	irgsp1_rep	mRNA	32044764	32048497	.	+	.	ID=Os04t0630000-01;Name=Os04t0630000-01;Locus_id=Os04g0630000;Oryzabase Gene Name Synonym(s)=mesocotyl length candidate gene%2C SDA1 domain-containing protein;Note=SDA1 domain containing protein.;Transcript_evidence=AK060199 (DDBJ%2C Best hit);ORF_evidence=Q25A39 (UniProt);InterPro=SDA1 (IPR007949);NIAS_FLcDNA=001-001-F12;Oryzabase=20301;Expression=AK060199;TENOR=Os04t0630000-01;KEGG=Os04t0630000-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	32044764	32044841	.	+	0	Parent=Os04t0630000-01
Chr04	irgsp1_rep	CDS	32044946	32045095	.	+	0	Parent=Os04t0630000-01
Chr04	irgsp1_rep	CDS	32045185	32045238	.	+	0	Parent=Os04t0630000-01
Chr04	irgsp1_rep	CDS	32045517	32045612	.	+	0	Parent=Os04t0630000-01
Chr04	irgsp1_rep	CDS	32045946	32046005	.	+	0	Parent=Os04t0630000-01
Chr04	irgsp1_rep	CDS	32046101	32046175	.	+	0	Parent=Os04t0630000-01
Chr04	irgsp1_rep	CDS	32046259	32046312	.	+	0	Parent=Os04t0630000-01
Chr04	irgsp1_rep	CDS	32046804	32046905	.	+	0	Parent=Os04t0630000-01
Chr04	irgsp1_rep	CDS	32046984	32047670	.	+	0	Parent=Os04t0630000-01
Chr04	irgsp1_rep	CDS	32047767	32047898	.	+	0	Parent=Os04t0630000-01
Chr04	irgsp1_rep	CDS	32047997	32048104	.	+	0	Parent=Os04t0630000-01
Chr04	irgsp1_rep	CDS	32048251	32048400	.	+	0	Parent=Os04t0630000-01
Chr04	irgsp1_rep	three_prime_UTR	32048401	32048497	.	+	.	Parent=Os04t0630000-01
Chr04	irgsp1_rep	mRNA	32049063	32051694	.	+	.	ID=Os04t0630100-01;Name=Os04t0630100-01;Locus_id=Os04g0630100;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK068564 (DDBJ%2C Best hit);ORF_evidence=NP_001053973.1 (RefSeq);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013151C19;Expression=AK068564;TENOR=Os04t0630100-01;KEGG=Os04t0630100-01
Chr04	irgsp1_rep	five_prime_UTR	32049063	32049244	.	+	.	Parent=Os04t0630100-01
Chr04	irgsp1_rep	CDS	32049245	32049365	.	+	0	Parent=Os04t0630100-01
Chr04	irgsp1_rep	CDS	32049529	32049695	.	+	2	Parent=Os04t0630100-01
Chr04	irgsp1_rep	CDS	32050404	32050613	.	+	0	Parent=Os04t0630100-01
Chr04	irgsp1_rep	CDS	32050899	32051026	.	+	0	Parent=Os04t0630100-01
Chr04	irgsp1_rep	CDS	32051161	32051395	.	+	1	Parent=Os04t0630100-01
Chr04	irgsp1_rep	CDS	32051486	32051590	.	+	0	Parent=Os04t0630100-01
Chr04	irgsp1_rep	three_prime_UTR	32051591	32051694	.	+	.	Parent=Os04t0630100-01
Chr04	irgsp1_rep	mRNA	32059560	32062390	.	+	.	ID=Os04t0630300-01;Name=Os04t0630300-01;Locus_id=Os04g0630300;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK059518 (DDBJ%2C Best hit);ORF_evidence=Q25A37 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-029-C03;Expression=AK059518;TENOR=Os04t0630300-01;KEGG=Os04t0630300-01
Chr04	irgsp1_rep	five_prime_UTR	32059560	32059602	.	+	.	Parent=Os04t0630300-01
Chr04	irgsp1_rep	CDS	32059603	32059723	.	+	0	Parent=Os04t0630300-01
Chr04	irgsp1_rep	CDS	32059993	32060159	.	+	2	Parent=Os04t0630300-01
Chr04	irgsp1_rep	CDS	32060913	32061131	.	+	0	Parent=Os04t0630300-01
Chr04	irgsp1_rep	CDS	32061224	32061383	.	+	0	Parent=Os04t0630300-01
Chr04	irgsp1_rep	CDS	32061777	32061996	.	+	2	Parent=Os04t0630300-01
Chr04	irgsp1_rep	CDS	32062079	32062232	.	+	1	Parent=Os04t0630300-01
Chr04	irgsp1_rep	three_prime_UTR	32062233	32062390	.	+	.	Parent=Os04t0630300-01
Chr04	irgsp1_rep	mRNA	32063756	32065731	.	+	.	ID=Os04t0630400-01;Name=Os04t0630400-01;Locus_id=Os04g0630400;Oryzabase Gene Name Synonym(s)=leucoanthocyanidin reductase;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK072654 (DDBJ%2C Best hit);ORF_evidence=Q25A46 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023133I21;Oryzabase=23429;Expression=AK072654;TENOR=Os04t0630400-01;KEGG=Os04t0630400-01
Chr04	irgsp1_rep	five_prime_UTR	32063756	32063920	.	+	.	Parent=Os04t0630400-01
Chr04	irgsp1_rep	CDS	32063921	32064044	.	+	0	Parent=Os04t0630400-01
Chr04	irgsp1_rep	CDS	32064235	32064410	.	+	2	Parent=Os04t0630400-01
Chr04	irgsp1_rep	CDS	32064494	32064703	.	+	0	Parent=Os04t0630400-01
Chr04	irgsp1_rep	CDS	32064801	32064960	.	+	0	Parent=Os04t0630400-01
Chr04	irgsp1_rep	CDS	32065074	32065293	.	+	2	Parent=Os04t0630400-01
Chr04	irgsp1_rep	CDS	32065369	32065519	.	+	1	Parent=Os04t0630400-01
Chr04	irgsp1_rep	three_prime_UTR	32065520	32065731	.	+	.	Parent=Os04t0630400-01
Chr04	irgsp1_rep	mRNA	32075395	32076284	.	+	.	ID=Os04t0630500-00;Name=Os04t0630500-00;Locus_id=Os04g0630500;Note=Similar to H0323C08.15 protein.;Transcript_evidence=AK241685 (DDBJ%2C Secondary hit);ORF_evidence=Q25A34 (UniProt);TENOR=Os04t0630500-00;KEGG=Os04t0630500-00
Chr04	irgsp1_rep	CDS	32075395	32075542	.	+	0	Parent=Os04t0630500-00
Chr04	irgsp1_rep	CDS	32075550	32075977	.	+	2	Parent=Os04t0630500-00
Chr04	irgsp1_rep	three_prime_UTR	32075978	32076284	.	+	.	Parent=Os04t0630500-00
Chr04	irgsp1_rep	mRNA	32076491	32077277	.	-	.	ID=Os04t0630551-00;Name=Os04t0630551-00;Locus_id=Os04g0630551;Note=Hypothetical gene.;Transcript_evidence=AK062616 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;Expression=AK062616;TENOR=Os04t0630551-00;KEGG=Os04t0630551-00
Chr04	irgsp1_rep	five_prime_UTR	32077276	32077277	.	-	.	Parent=Os04t0630551-00
Chr04	irgsp1_rep	CDS	32076991	32077275	.	-	0	Parent=Os04t0630551-00
Chr04	irgsp1_rep	three_prime_UTR	32076491	32076990	.	-	.	Parent=Os04t0630551-00
Chr04	irgsp1_rep	mRNA	32078504	32081665	.	+	.	ID=Os04t0630600-00;Name=Os04t0630600-00;Locus_id=Os04g0630600;Oryzabase Gene Symbol Synonym(s)=OsSTA134;Note=Similar to H0323C08.16 protein.;Transcript_evidence=AK373696 (DDBJ);ORF_evidence=Q25A33 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);Oryzabase=19423;TENOR=Os04t0630600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32078504	32078625	.	+	.	Parent=Os04t0630600-00
Chr04	irgsp1_rep	CDS	32078626	32078674	.	+	0	Parent=Os04t0630600-00
Chr04	irgsp1_rep	CDS	32079015	32079181	.	+	2	Parent=Os04t0630600-00
Chr04	irgsp1_rep	CDS	32079435	32079635	.	+	0	Parent=Os04t0630600-00
Chr04	irgsp1_rep	CDS	32080500	32080659	.	+	0	Parent=Os04t0630600-00
Chr04	irgsp1_rep	CDS	32081069	32081306	.	+	2	Parent=Os04t0630600-00
Chr04	irgsp1_rep	CDS	32081407	32081665	.	+	1	Parent=Os04t0630600-00
Chr04	irgsp1_rep	mRNA	32083281	32083982	.	+	.	ID=Os04t0630700-01;Name=Os04t0630700-01;Locus_id=Os04g0630700;Note=Similar to H0323C08.17 protein.;Transcript_evidence=AK108022 (DDBJ%2C Best hit);ORF_evidence=Q25A32 (UniProt);NIAS_FLcDNA=002-136-A04;TENOR=Os04t0630700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32083281	32083592	.	+	.	Parent=Os04t0630700-01
Chr04	irgsp1_rep	CDS	32083593	32083919	.	+	0	Parent=Os04t0630700-01
Chr04	irgsp1_rep	three_prime_UTR	32083920	32083982	.	+	.	Parent=Os04t0630700-01
Chr04	irgsp1_rep	mRNA	32085612	32088272	.	+	.	ID=Os04t0630800-01;Name=Os04t0630800-01;Locus_id=Os04g0630800;Note=Similar to Anthocyanidin reductase.;Transcript_evidence=AK067411 (DDBJ%2C Best hit);ORF_evidence=Q25A25 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013104E10;Expression=AK067411;TENOR=Os04t0630800-01;KEGG=Os04t0630800-01 (EC:1.3.1.77)
Chr04	irgsp1_rep	five_prime_UTR	32085612	32085645	.	+	.	Parent=Os04t0630800-01
Chr04	irgsp1_rep	CDS	32085646	32085766	.	+	0	Parent=Os04t0630800-01
Chr04	irgsp1_rep	CDS	32086133	32086299	.	+	2	Parent=Os04t0630800-01
Chr04	irgsp1_rep	CDS	32086413	32086613	.	+	0	Parent=Os04t0630800-01
Chr04	irgsp1_rep	CDS	32087160	32087319	.	+	0	Parent=Os04t0630800-01
Chr04	irgsp1_rep	CDS	32087621	32087858	.	+	2	Parent=Os04t0630800-01
Chr04	irgsp1_rep	CDS	32087955	32088102	.	+	1	Parent=Os04t0630800-01
Chr04	irgsp1_rep	three_prime_UTR	32088103	32088272	.	+	.	Parent=Os04t0630800-01
Chr04	irgsp1_rep	mRNA	32090880	32093039	.	+	.	ID=Os04t0630900-01;Name=Os04t0630900-01;Locus_id=Os04g0630900;Note=Similar to H0105C05.3 protein.;Transcript_evidence=AK067744 (DDBJ%2C Best hit);ORF_evidence=Q25A24 (UniProt);GO=Biological Process: steroid biosynthetic process (GO:0006694),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: 3-beta-hydroxy-delta5-steroid dehydrogenase activity (GO:0003854),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616);InterPro=3-beta hydroxysteroid dehydrogenase/isomerase (IPR002225),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013119D08;TENOR=Os04t0630900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	32090880	32091027	.	+	0	Parent=Os04t0630900-01
Chr04	irgsp1_rep	CDS	32091469	32091635	.	+	2	Parent=Os04t0630900-01
Chr04	irgsp1_rep	CDS	32091812	32092264	.	+	0	Parent=Os04t0630900-01
Chr04	irgsp1_rep	three_prime_UTR	32092265	32092303	.	+	.	Parent=Os04t0630900-01
Chr04	irgsp1_rep	three_prime_UTR	32092460	32092673	.	+	.	Parent=Os04t0630900-01
Chr04	irgsp1_rep	three_prime_UTR	32092788	32093039	.	+	.	Parent=Os04t0630900-01
Chr04	irgsp1_rep	mRNA	32131925	32135388	.	+	.	ID=Os04t0631000-00;Name=Os04t0631000-00;Locus_id=Os04g0631000;Note=Similar to H0105C05.4 protein.;Transcript_evidence=AK250489 (DDBJ);ORF_evidence=Q25A19 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);TENOR=Os04t0631000-00;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32131925	32131998	.	+	.	Parent=Os04t0631000-00
Chr04	irgsp1_rep	CDS	32131999	32132119	.	+	0	Parent=Os04t0631000-00
Chr04	irgsp1_rep	CDS	32133299	32133465	.	+	2	Parent=Os04t0631000-00
Chr04	irgsp1_rep	CDS	32133650	32133850	.	+	0	Parent=Os04t0631000-00
Chr04	irgsp1_rep	CDS	32134553	32134712	.	+	0	Parent=Os04t0631000-00
Chr04	irgsp1_rep	CDS	32134810	32135023	.	+	2	Parent=Os04t0631000-00
Chr04	irgsp1_rep	CDS	32135241	32135388	.	+	1	Parent=Os04t0631000-00
Chr04	irgsp1_rep	mRNA	32139084	32140993	.	+	.	ID=Os04t0631100-01;Name=Os04t0631100-01;Locus_id=Os04g0631100;Note=Similar to H0105C05.5 protein.;Transcript_evidence=AK121883 (DDBJ%2C Best hit);ORF_evidence=Q25A18 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857);InterPro=General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J033104P11;TENOR=Os04t0631100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32139084	32139355	.	+	.	Parent=Os04t0631100-01
Chr04	irgsp1_rep	CDS	32139356	32140275	.	+	0	Parent=Os04t0631100-01
Chr04	irgsp1_rep	CDS	32140345	32140663	.	+	1	Parent=Os04t0631100-01
Chr04	irgsp1_rep	three_prime_UTR	32140664	32140993	.	+	.	Parent=Os04t0631100-01
Chr04	irgsp1_rep	mRNA	32145681	32147446	.	+	.	ID=Os04t0631200-01;Name=Os04t0631200-01;Locus_id=Os04g0631200;CGSNL Gene Symbol=XTH3;CGSNL Gene Name=XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 3;Oryzabase Gene Symbol Synonym(s)=OsXTH3%2C XTR4%2C OsXTR4;Oryzabase Gene Name Synonym(s)=xyloglucan endotransglucosylase/hydrolase%2C xyloglucan endotransglucosylase 3%2C XET-related gene 4;Note=Similar to cDNA clone:J033024P08%2C full insert sequence.;Transcript_evidence=AK059277 (DDBJ%2C Best hit);ORF_evidence=B7ENX5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 16 (IPR000757),Concanavalin A-like lectin/glucanase (IPR008985),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320);NIAS_FLcDNA=001-025-C07;Oryzabase=6511;TENOR=Os04t0631200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32145681	32145729	.	+	.	Parent=Os04t0631200-01
Chr04	irgsp1_rep	CDS	32145730	32145889	.	+	0	Parent=Os04t0631200-01
Chr04	irgsp1_rep	CDS	32146008	32146112	.	+	2	Parent=Os04t0631200-01
Chr04	irgsp1_rep	CDS	32146482	32147203	.	+	2	Parent=Os04t0631200-01
Chr04	irgsp1_rep	three_prime_UTR	32147204	32147446	.	+	.	Parent=Os04t0631200-01
Chr04	irgsp1_rep	mRNA	32145683	32147370	.	+	.	ID=Os04t0631200-02;Name=Os04t0631200-02;Locus_id=Os04g0631200;CGSNL Gene Symbol=XTH3;CGSNL Gene Name=XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 3;Oryzabase Gene Symbol Synonym(s)=OsXTH3%2C XTR4%2C OsXTR4;Oryzabase Gene Name Synonym(s)=xyloglucan endotransglucosylase/hydrolase%2C xyloglucan endotransglucosylase 3%2C XET-related gene 4;Note=Similar to Xyloglucan endotransglycosylase (Fragment).;Transcript_evidence=AK099331 (DDBJ%2C Best hit);ORF_evidence=Q25A17 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: cellular glucan metabolic process (GO:0006073),Cellular Component: cell wall (GO:0005618),Cellular Component: apoplast (GO:0048046),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762);InterPro=Glycoside hydrolase%2C family 16 (IPR000757),Beta-glucanase (IPR008264),Concanavalin A-like lectin/glucanase (IPR008985),Xyloglucan endo-transglycosylase%2C C-terminal (IPR010713),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Xyloglucan endotransglucosylase/hydrolase (IPR016455);NIAS_FLcDNA=J033024P08;Oryzabase=6511;Expression=AK099331;TENOR=Os04t0631200-02;KEGG=Os04t0631200-02
Chr04	irgsp1_rep	five_prime_UTR	32145683	32145729	.	+	.	Parent=Os04t0631200-02
Chr04	irgsp1_rep	CDS	32145730	32145889	.	+	0	Parent=Os04t0631200-02
Chr04	irgsp1_rep	CDS	32146008	32146108	.	+	2	Parent=Os04t0631200-02
Chr04	irgsp1_rep	CDS	32146482	32147180	.	+	0	Parent=Os04t0631200-02
Chr04	irgsp1_rep	three_prime_UTR	32147181	32147370	.	+	.	Parent=Os04t0631200-02
Chr04	irgsp1_rep	mRNA	32150259	32150802	.	+	.	ID=Os04t0631300-01;Name=Os04t0631300-01;Locus_id=Os04g0631300;Note=Non-protein coding transcript.;Transcript_evidence=AK059038 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-021-C12;TENOR=Os04t0631300-01
Chr04	irgsp1_rep	exon	32150259	32150802	.	+	.	Parent=Os04t0631300-01
Chr04	irgsp1_rep	mRNA	32166724	32169575	.	+	.	ID=Os04t0631600-01;Name=Os04t0631600-01;Locus_id=Os04g0631600;Oryzabase Gene Symbol Synonym(s)=OsbHLH068%2C bHLH068%2C bHLH68;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 068;Note=Basic helix-loop-helix dimerisation region bHLH domain containing protein.;Transcript_evidence=AK069366 (DDBJ%2C Best hit);ORF_evidence=NP_001152376.1 (RefSeq);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J023012B21;Oryzabase=15355;Expression=AK069366;TENOR=Os04t0631600-01;KEGG=Os04t0631600-01
Chr04	irgsp1_rep	five_prime_UTR	32166724	32166902	.	+	.	Parent=Os04t0631600-01
Chr04	irgsp1_rep	CDS	32166903	32167270	.	+	0	Parent=Os04t0631600-01
Chr04	irgsp1_rep	CDS	32167391	32167898	.	+	1	Parent=Os04t0631600-01
Chr04	irgsp1_rep	CDS	32168007	32168111	.	+	0	Parent=Os04t0631600-01
Chr04	irgsp1_rep	CDS	32168302	32168367	.	+	0	Parent=Os04t0631600-01
Chr04	irgsp1_rep	CDS	32168551	32168616	.	+	0	Parent=Os04t0631600-01
Chr04	irgsp1_rep	CDS	32168778	32168831	.	+	0	Parent=Os04t0631600-01
Chr04	irgsp1_rep	CDS	32168975	32169121	.	+	0	Parent=Os04t0631600-01
Chr04	irgsp1_rep	three_prime_UTR	32169122	32169575	.	+	.	Parent=Os04t0631600-01
Chr04	irgsp1_rep	mRNA	32173571	32177352	.	-	.	ID=Os04t0631800-00;Name=Os04t0631800-00;Locus_id=Os04g0631800;CGSNL Gene Symbol=RLCK162;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 162;Oryzabase Gene Symbol Synonym(s)=OsRLCK162;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 162;Note=Similar to H0105C05.10 protein.;Transcript_evidence=AF403126 (DDBJ%2C Best hit);ORF_evidence=Q25A21 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Serine-threonine/tyrosine-protein kinase (IPR001245),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18865;TENOR=Os04t0631800-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32177352	32177352	.	-	.	Parent=Os04t0631800-00
Chr04	irgsp1_rep	CDS	32176082	32177351	.	-	0	Parent=Os04t0631800-00
Chr04	irgsp1_rep	CDS	32175276	32175377	.	-	2	Parent=Os04t0631800-00
Chr04	irgsp1_rep	CDS	32175007	32175188	.	-	2	Parent=Os04t0631800-00
Chr04	irgsp1_rep	CDS	32174684	32174894	.	-	0	Parent=Os04t0631800-00
Chr04	irgsp1_rep	CDS	32174343	32174580	.	-	2	Parent=Os04t0631800-00
Chr04	irgsp1_rep	CDS	32174100	32174250	.	-	1	Parent=Os04t0631800-00
Chr04	irgsp1_rep	CDS	32173716	32174018	.	-	0	Parent=Os04t0631800-00
Chr04	irgsp1_rep	three_prime_UTR	32173571	32173715	.	-	.	Parent=Os04t0631800-00
Chr04	irgsp1_rep	mRNA	32178061	32178634	.	+	.	ID=Os04t0632000-01;Name=Os04t0632000-01;Locus_id=Os04g0632000;Note=Non-protein coding transcript.;Transcript_evidence=AK064630 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-113-G05;TENOR=Os04t0632000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	exon	32178061	32178634	.	+	.	Parent=Os04t0632000-01
Chr04	irgsp1_rep	mRNA	32178172	32182246	.	+	.	ID=Os04t0632000-02;Name=Os04t0632000-02;Locus_id=Os04g0632000;Note=Hypothetical protein.;Transcript_evidence=AK108040 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-137-D02;Expression=AK108040;TENOR=Os04t0632000-02;KEGG=Os04t0632000-02
Chr04	irgsp1_rep	five_prime_UTR	32178172	32178393	.	+	.	Parent=Os04t0632000-02
Chr04	irgsp1_rep	five_prime_UTR	32178527	32178632	.	+	.	Parent=Os04t0632000-02
Chr04	irgsp1_rep	five_prime_UTR	32180860	32181350	.	+	.	Parent=Os04t0632000-02
Chr04	irgsp1_rep	five_prime_UTR	32181450	32181857	.	+	.	Parent=Os04t0632000-02
Chr04	irgsp1_rep	CDS	32181858	32182145	.	+	0	Parent=Os04t0632000-02
Chr04	irgsp1_rep	three_prime_UTR	32182146	32182246	.	+	.	Parent=Os04t0632000-02
Chr04	irgsp1_rep	mRNA	32178831	32182153	.	-	.	ID=Os04t0632100-01;Name=Os04t0632100-01;Locus_id=Os04g0632100;CGSNL Gene Symbol=RLCK163;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 163;Oryzabase Gene Symbol Synonym(s)=OsRLCK163;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 163;Note=S-locus receptor-like kinase RLK13.;Transcript_evidence=AK065352 (DDBJ%2C Best hit);ORF_evidence=Q8LLI3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),S-receptor-like serine/threonine-protein kinase (IPR024171);NIAS_FLcDNA=J013022L23;Oryzabase=18866;Expression=AK065352;TENOR=Os04t0632100-01;KEGG=Os04t0632100-01
Chr04	irgsp1_rep	five_prime_UTR	32182136	32182153	.	-	.	Parent=Os04t0632100-01
Chr04	irgsp1_rep	CDS	32180881	32182135	.	-	0	Parent=Os04t0632100-01
Chr04	irgsp1_rep	CDS	32180458	32180559	.	-	2	Parent=Os04t0632100-01
Chr04	irgsp1_rep	CDS	32180199	32180380	.	-	2	Parent=Os04t0632100-01
Chr04	irgsp1_rep	CDS	32179904	32180114	.	-	0	Parent=Os04t0632100-01
Chr04	irgsp1_rep	CDS	32179566	32179803	.	-	2	Parent=Os04t0632100-01
Chr04	irgsp1_rep	CDS	32179324	32179474	.	-	1	Parent=Os04t0632100-01
Chr04	irgsp1_rep	CDS	32178935	32179237	.	-	0	Parent=Os04t0632100-01
Chr04	irgsp1_rep	three_prime_UTR	32178831	32178934	.	-	.	Parent=Os04t0632100-01
Chr04	irgsp1_rep	mRNA	32183396	32184034	.	+	.	ID=Os04t0632200-01;Name=Os04t0632200-01;Locus_id=Os04g0632200;Note=Hypothetical protein.;Transcript_evidence=AK287843 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065194K24;TENOR=Os04t0632200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32183396	32183396	.	+	.	Parent=Os04t0632200-01
Chr04	irgsp1_rep	CDS	32183397	32183586	.	+	0	Parent=Os04t0632200-01
Chr04	irgsp1_rep	CDS	32183732	32183820	.	+	2	Parent=Os04t0632200-01
Chr04	irgsp1_rep	three_prime_UTR	32183821	32184034	.	+	.	Parent=Os04t0632200-01
Chr04	irgsp1_rep	mRNA	32183880	32187311	.	-	.	ID=Os04t0632300-01;Name=Os04t0632300-01;Locus_id=Os04g0632300;CGSNL Gene Symbol=RLCK379;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 379;Oryzabase Gene Symbol Synonym(s)=OsRLCK379;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 379;Note=Similar to H0105C05.10 protein.;Transcript_evidence=AK119388 (DDBJ%2C Best hit);ORF_evidence=Q25A21 (UniProt);GO=Molecular Function: sugar binding (GO:0005529);InterPro=Bulb-type lectin domain (IPR001480);NIAS_FLcDNA=001-132-C04;Oryzabase=19047;TENOR=Os04t0632300-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32187134	32187311	.	-	.	Parent=Os04t0632300-01
Chr04	irgsp1_rep	CDS	32186660	32187133	.	-	0	Parent=Os04t0632300-01
Chr04	irgsp1_rep	three_prime_UTR	32185905	32186659	.	-	.	Parent=Os04t0632300-01
Chr04	irgsp1_rep	three_prime_UTR	32185724	32185825	.	-	.	Parent=Os04t0632300-01
Chr04	irgsp1_rep	three_prime_UTR	32185456	32185638	.	-	.	Parent=Os04t0632300-01
Chr04	irgsp1_rep	three_prime_UTR	32185140	32185349	.	-	.	Parent=Os04t0632300-01
Chr04	irgsp1_rep	three_prime_UTR	32184688	32184925	.	-	.	Parent=Os04t0632300-01
Chr04	irgsp1_rep	three_prime_UTR	32184439	32184592	.	-	.	Parent=Os04t0632300-01
Chr04	irgsp1_rep	three_prime_UTR	32183880	32184343	.	-	.	Parent=Os04t0632300-01
Chr04	irgsp1_rep	mRNA	32185847	32187369	.	+	.	ID=Os04t0632350-01;Name=Os04t0632350-01;Locus_id=Os04g0632350;Note=Non-protein coding transcript.;Transcript_evidence=AK064596 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-112-G11;TENOR=Os04t0632350-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	exon	32185847	32187369	.	+	.	Parent=Os04t0632350-01
Chr04	irgsp1_rep	mRNA	32188994	32193612	.	+	.	ID=Os04t0632400-01;Name=Os04t0632400-01;Locus_id=Os04g0632400;Note=Hypothetical protein.;Transcript_evidence=AK068530 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013156P12;TENOR=Os04t0632400-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32188994	32189391	.	+	.	Parent=Os04t0632400-01
Chr04	irgsp1_rep	five_prime_UTR	32191763	32192760	.	+	.	Parent=Os04t0632400-01
Chr04	irgsp1_rep	CDS	32192761	32193000	.	+	0	Parent=Os04t0632400-01
Chr04	irgsp1_rep	three_prime_UTR	32193001	32193612	.	+	.	Parent=Os04t0632400-01
Chr04	irgsp1_rep	mRNA	32189005	32197539	.	+	.	ID=Os04t0632400-02;Name=Os04t0632400-02;Locus_id=Os04g0632400;Note=Hypothetical protein.;Transcript_evidence=AK101202 (DDBJ%2C Best hit),AK065575 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033030N10,J013028H11;TENOR=Os04t0632400-02;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32189005	32189391	.	+	.	Parent=Os04t0632400-02
Chr04	irgsp1_rep	five_prime_UTR	32191763	32193557	.	+	.	Parent=Os04t0632400-02
Chr04	irgsp1_rep	five_prime_UTR	32195640	32196592	.	+	.	Parent=Os04t0632400-02
Chr04	irgsp1_rep	CDS	32196593	32196844	.	+	0	Parent=Os04t0632400-02
Chr04	irgsp1_rep	three_prime_UTR	32196845	32197539	.	+	.	Parent=Os04t0632400-02
Chr04	irgsp1_rep	mRNA	32189022	32197539	.	+	.	ID=Os04t0632400-03;Name=Os04t0632400-03;Locus_id=Os04g0632400;Note=Hypothetical protein.;Transcript_evidence=AK101815 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033067A06;TENOR=Os04t0632400-03;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32189022	32189391	.	+	.	Parent=Os04t0632400-03
Chr04	irgsp1_rep	five_prime_UTR	32191763	32192285	.	+	.	Parent=Os04t0632400-03
Chr04	irgsp1_rep	five_prime_UTR	32192777	32193557	.	+	.	Parent=Os04t0632400-03
Chr04	irgsp1_rep	five_prime_UTR	32195640	32196592	.	+	.	Parent=Os04t0632400-03
Chr04	irgsp1_rep	CDS	32196593	32196844	.	+	0	Parent=Os04t0632400-03
Chr04	irgsp1_rep	three_prime_UTR	32196845	32197539	.	+	.	Parent=Os04t0632400-03
Chr04	irgsp1_rep	mRNA	32189025	32192476	.	+	.	ID=Os04t0632400-04;Name=Os04t0632400-04;Locus_id=Os04g0632400;Note=Hypothetical gene.;Transcript_evidence=AK072875 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023144D11;TENOR=Os04t0632400-04;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32189025	32192053	.	+	.	Parent=Os04t0632400-04
Chr04	irgsp1_rep	CDS	32192054	32192281	.	+	0	Parent=Os04t0632400-04
Chr04	irgsp1_rep	three_prime_UTR	32192282	32192476	.	+	.	Parent=Os04t0632400-04
Chr04	irgsp1_rep	mRNA	32189416	32193189	.	-	.	ID=Os04t0632500-00;Name=Os04t0632500-00;Locus_id=Os04g0632500;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AF403128 (DDBJ%2C Best hit);ORF_evidence=NP_001053990.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Serine-threonine/tyrosine-protein kinase (IPR001245),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os04t0632500-00;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32193165	32193189	.	-	.	Parent=Os04t0632500-00
Chr04	irgsp1_rep	CDS	32191916	32193164	.	-	0	Parent=Os04t0632500-00
Chr04	irgsp1_rep	CDS	32191658	32191756	.	-	2	Parent=Os04t0632500-00
Chr04	irgsp1_rep	CDS	32191271	32191449	.	-	2	Parent=Os04t0632500-00
Chr04	irgsp1_rep	CDS	32190957	32191200	.	-	0	Parent=Os04t0632500-00
Chr04	irgsp1_rep	CDS	32190615	32190852	.	-	2	Parent=Os04t0632500-00
Chr04	irgsp1_rep	CDS	32190331	32190481	.	-	1	Parent=Os04t0632500-00
Chr04	irgsp1_rep	CDS	32189919	32190221	.	-	0	Parent=Os04t0632500-00
Chr04	irgsp1_rep	three_prime_UTR	32189416	32189918	.	-	.	Parent=Os04t0632500-00
Chr04	irgsp1_rep	mRNA	32193782	32196947	.	-	.	ID=Os04t0632600-00;Name=Os04t0632600-00;Locus_id=Os04g0632600;Note=Bulb-type lectin domain domain containing protein.;Transcript_evidence=AF403129 (DDBJ%2C Best hit);ORF_evidence=B8AUV4 (UniProt);GO=Molecular Function: sugar binding (GO:0005529);InterPro=Bulb-type lectin domain (IPR001480);TENOR=Os04t0632600-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32196925	32196947	.	-	.	Parent=Os04t0632600-00
Chr04	irgsp1_rep	CDS	32196610	32196924	.	-	0	Parent=Os04t0632600-00
Chr04	irgsp1_rep	three_prime_UTR	32195661	32196609	.	-	.	Parent=Os04t0632600-00
Chr04	irgsp1_rep	three_prime_UTR	32195415	32195531	.	-	.	Parent=Os04t0632600-00
Chr04	irgsp1_rep	three_prime_UTR	32195158	32195351	.	-	.	Parent=Os04t0632600-00
Chr04	irgsp1_rep	three_prime_UTR	32194867	32195077	.	-	.	Parent=Os04t0632600-00
Chr04	irgsp1_rep	three_prime_UTR	32194535	32194772	.	-	.	Parent=Os04t0632600-00
Chr04	irgsp1_rep	three_prime_UTR	32194280	32194430	.	-	.	Parent=Os04t0632600-00
Chr04	irgsp1_rep	three_prime_UTR	32193782	32194195	.	-	.	Parent=Os04t0632600-00
Chr04	irgsp1_rep	mRNA	32198041	32202695	.	+	.	ID=Os04t0632750-00;Name=Os04t0632750-00;Locus_id=Os04g0632750;Note=Hypothetical protein.;Transcript_evidence=tplb0048b10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0632750-00
Chr04	irgsp1_rep	five_prime_UTR	32198041	32198129	.	+	.	Parent=Os04t0632750-00
Chr04	irgsp1_rep	five_prime_UTR	32198228	32198447	.	+	.	Parent=Os04t0632750-00
Chr04	irgsp1_rep	five_prime_UTR	32198562	32198784	.	+	.	Parent=Os04t0632750-00
Chr04	irgsp1_rep	five_prime_UTR	32200915	32201067	.	+	.	Parent=Os04t0632750-00
Chr04	irgsp1_rep	five_prime_UTR	32201241	32201437	.	+	.	Parent=Os04t0632750-00
Chr04	irgsp1_rep	CDS	32201438	32202349	.	+	0	Parent=Os04t0632750-00
Chr04	irgsp1_rep	three_prime_UTR	32202350	32202695	.	+	.	Parent=Os04t0632750-00
Chr04	irgsp1_rep	mRNA	32199986	32202721	.	-	.	ID=Os04t0632901-00;Name=Os04t0632901-00;Locus_id=Os04g0632901;Note=Similar to H0613A10.1 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q25A60 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os04t0632901-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	32201413	32202721	.	-	0	Parent=Os04t0632901-00
Chr04	irgsp1_rep	CDS	32200933	32201126	.	-	2	Parent=Os04t0632901-00
Chr04	irgsp1_rep	CDS	32200328	32200538	.	-	0	Parent=Os04t0632901-00
Chr04	irgsp1_rep	CDS	32199986	32200224	.	-	2	Parent=Os04t0632901-00
Chr04	irgsp1_rep	mRNA	32223116	32226952	.	-	.	ID=Os04t0633200-00;Name=Os04t0633200-00;Locus_id=Os04g0633200;Note=Similar to H0613A10.1 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q25A60 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os04t0633200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	32225692	32226952	.	-	0	Parent=Os04t0633200-00
Chr04	irgsp1_rep	CDS	32225152	32225256	.	-	2	Parent=Os04t0633200-00
Chr04	irgsp1_rep	CDS	32224872	32225050	.	-	2	Parent=Os04t0633200-00
Chr04	irgsp1_rep	CDS	32224222	32224432	.	-	0	Parent=Os04t0633200-00
Chr04	irgsp1_rep	CDS	32223737	32223974	.	-	2	Parent=Os04t0633200-00
Chr04	irgsp1_rep	CDS	32223504	32223651	.	-	1	Parent=Os04t0633200-00
Chr04	irgsp1_rep	CDS	32223116	32223418	.	-	0	Parent=Os04t0633200-00
Chr04	irgsp1_rep	mRNA	32225622	32226922	.	+	.	ID=Os04t0633225-00;Name=Os04t0633225-00;Locus_id=Os04g0633225;Note=Hypothetical protein.;Transcript_evidence=AK333662 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0633225-00
Chr04	irgsp1_rep	five_prime_UTR	32225622	32225623	.	+	.	Parent=Os04t0633225-00
Chr04	irgsp1_rep	CDS	32225624	32226331	.	+	0	Parent=Os04t0633225-00
Chr04	irgsp1_rep	three_prime_UTR	32226332	32226922	.	+	.	Parent=Os04t0633225-00
Chr04	irgsp1_rep	mRNA	32228230	32231359	.	+	.	ID=Os04t0633250-01;Name=Os04t0633250-01;Locus_id=Os04g0633250;Note=Non-protein coding transcript.;Transcript_evidence=AK242349 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080014D03;TENOR=Os04t0633250-01
Chr04	irgsp1_rep	exon	32228230	32228540	.	+	.	Parent=Os04t0633250-01
Chr04	irgsp1_rep	exon	32231071	32231359	.	+	.	Parent=Os04t0633250-01
Chr04	irgsp1_rep	mRNA	32229267	32232359	.	-	.	ID=Os04t0633300-00;Name=Os04t0633300-00;Locus_id=Os04g0633300;Note=Similar to H0613A10.4 protein.;Transcript_evidence=tplb0051a20 (Wheat FLcDNA);ORF_evidence=Q25A57 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Serine-threonine/tyrosine-protein kinase (IPR001245),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os04t0633300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32232357	32232359	.	-	.	Parent=Os04t0633300-00
Chr04	irgsp1_rep	CDS	32231090	32232356	.	-	0	Parent=Os04t0633300-00
Chr04	irgsp1_rep	CDS	32230580	32230947	.	-	2	Parent=Os04t0633300-00
Chr04	irgsp1_rep	CDS	32230291	32230501	.	-	0	Parent=Os04t0633300-00
Chr04	irgsp1_rep	CDS	32229971	32230208	.	-	2	Parent=Os04t0633300-00
Chr04	irgsp1_rep	CDS	32229734	32229881	.	-	1	Parent=Os04t0633300-00
Chr04	irgsp1_rep	CDS	32229267	32229569	.	-	0	Parent=Os04t0633300-00
Chr04	irgsp1_rep	mRNA	32234634	32235080	.	+	.	ID=Os04t0633400-00;Name=Os04t0633400-00;Locus_id=Os04g0633400;CGSNL Gene Symbol=RALF20;CGSNL Gene Name=RAPID ALKALIZATION FACTOR 20;Oryzabase Gene Symbol Synonym(s)=OsRALF-20%2C OsRALF20%2C RALF-20;Oryzabase Gene Name Synonym(s)=Rapid alkalization factor 20;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0042h08 (Wheat FLcDNA);ORF_evidence=NP_001042323.1 (RefSeq);Oryzabase=21124;TENOR=Os04t0633400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	32234634	32234918	.	+	0	Parent=Os04t0633400-00
Chr04	irgsp1_rep	three_prime_UTR	32234919	32235080	.	+	.	Parent=Os04t0633400-00
Chr04	irgsp1_rep	mRNA	32235370	32235564	.	+	.	ID=Os04t0633500-00;Name=Os04t0633500-00;Locus_id=Os04g0633500;Note=Conserved hypothetical protein.;Transcript_evidence=BT084467 (DDBJ);ORF_evidence=C4J0X0 (UniProt);TENOR=Os04t0633500-00
Chr04	irgsp1_rep	five_prime_UTR	32235370	32235457	.	+	.	Parent=Os04t0633500-00
Chr04	irgsp1_rep	CDS	32235458	32235547	.	+	0	Parent=Os04t0633500-00
Chr04	irgsp1_rep	three_prime_UTR	32235548	32235564	.	+	.	Parent=Os04t0633500-00
Chr04	irgsp1_rep	mRNA	32239057	32242134	.	+	.	ID=Os04t0633600-00;Name=Os04t0633600-00;Locus_id=Os04g0633600;CGSNL Gene Symbol=RLCK164;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 164;Oryzabase Gene Symbol Synonym(s)=OsRLCK164;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 164;Note=Similar to H0613A10.6 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q25A55 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18867;TENOR=Os04t0633600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	32239057	32240227	.	+	0	Parent=Os04t0633600-00
Chr04	irgsp1_rep	CDS	32240799	32240872	.	+	2	Parent=Os04t0633600-00
Chr04	irgsp1_rep	CDS	32240967	32241177	.	+	0	Parent=Os04t0633600-00
Chr04	irgsp1_rep	CDS	32241260	32241486	.	+	2	Parent=Os04t0633600-00
Chr04	irgsp1_rep	CDS	32241832	32242134	.	+	0	Parent=Os04t0633600-00
Chr04	irgsp1_rep	mRNA	32244877	32248172	.	-	.	ID=Os04t0633800-00;Name=Os04t0633800-00;Locus_id=Os04g0633800;CGSNL Gene Symbol=RLCK165;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 165;Oryzabase Gene Symbol Synonym(s)=OsRLCK165;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 165;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001053996.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Serine-threonine/tyrosine-protein kinase (IPR001245),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18868;TENOR=Os04t0633800-00
Chr04	irgsp1_rep	CDS	32246912	32248172	.	-	0	Parent=Os04t0633800-00
Chr04	irgsp1_rep	CDS	32246416	32246532	.	-	2	Parent=Os04t0633800-00
Chr04	irgsp1_rep	CDS	32246151	32246332	.	-	2	Parent=Os04t0633800-00
Chr04	irgsp1_rep	CDS	32245862	32246072	.	-	0	Parent=Os04t0633800-00
Chr04	irgsp1_rep	CDS	32245511	32245748	.	-	2	Parent=Os04t0633800-00
Chr04	irgsp1_rep	CDS	32245261	32245411	.	-	1	Parent=Os04t0633800-00
Chr04	irgsp1_rep	CDS	32244877	32245179	.	-	0	Parent=Os04t0633800-00
Chr04	irgsp1_rep	mRNA	32244968	32248122	.	+	.	ID=Os04t0633850-00;Name=Os04t0633850-00;Locus_id=Os04g0633850;Note=Hypothetical protein.;Transcript_evidence=tplb0036c01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0633850-00
Chr04	irgsp1_rep	five_prime_UTR	32244968	32245224	.	+	.	Parent=Os04t0633850-00
Chr04	irgsp1_rep	five_prime_UTR	32245304	32245404	.	+	.	Parent=Os04t0633850-00
Chr04	irgsp1_rep	five_prime_UTR	32245503	32245714	.	+	.	Parent=Os04t0633850-00
Chr04	irgsp1_rep	five_prime_UTR	32245832	32246061	.	+	.	Parent=Os04t0633850-00
Chr04	irgsp1_rep	five_prime_UTR	32246143	32246440	.	+	.	Parent=Os04t0633850-00
Chr04	irgsp1_rep	five_prime_UTR	32246920	32247834	.	+	.	Parent=Os04t0633850-00
Chr04	irgsp1_rep	CDS	32247835	32248113	.	+	0	Parent=Os04t0633850-00
Chr04	irgsp1_rep	three_prime_UTR	32248114	32248122	.	+	.	Parent=Os04t0633850-00
Chr04	irgsp1_rep	mRNA	32248949	32253028	.	-	.	ID=Os04t0633900-00;Name=Os04t0633900-00;Locus_id=Os04g0633900;Note=Similar to H0315F07.1 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q25A01 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),S-receptor-like serine/threonine-protein kinase (IPR024171);TENOR=Os04t0633900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	32251705	32253028	.	-	0	Parent=Os04t0633900-00
Chr04	irgsp1_rep	CDS	32251393	32251533	.	-	2	Parent=Os04t0633900-00
Chr04	irgsp1_rep	CDS	32250482	32250642	.	-	2	Parent=Os04t0633900-00
Chr04	irgsp1_rep	CDS	32250142	32250358	.	-	0	Parent=Os04t0633900-00
Chr04	irgsp1_rep	CDS	32249767	32249992	.	-	2	Parent=Os04t0633900-00
Chr04	irgsp1_rep	CDS	32249513	32249645	.	-	1	Parent=Os04t0633900-00
Chr04	irgsp1_rep	CDS	32248949	32249251	.	-	0	Parent=Os04t0633900-00
Chr04	irgsp1_rep	mRNA	32251710	32252913	.	+	.	ID=Os04t0633950-00;Name=Os04t0633950-00;Locus_id=Os04g0633950;Note=Hypothetical protein.;Transcript_evidence=AK333662 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0633950-00
Chr04	irgsp1_rep	five_prime_UTR	32251710	32251918	.	+	.	Parent=Os04t0633950-00
Chr04	irgsp1_rep	CDS	32251919	32252884	.	+	0	Parent=Os04t0633950-00
Chr04	irgsp1_rep	three_prime_UTR	32252885	32252913	.	+	.	Parent=Os04t0633950-00
Chr04	irgsp1_rep	mRNA	32254122	32258262	.	-	.	ID=Os04t0634000-01;Name=Os04t0634000-01;Locus_id=Os04g0634000;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK106486 (DDBJ%2C Best hit);ORF_evidence=Q25A00 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),S-receptor-like serine/threonine-protein kinase (IPR024171);NIAS_FLcDNA=002-104-H03;Expression=AK106486;TENOR=Os04t0634000-01;KEGG=Os04t0634000-01
Chr04	irgsp1_rep	five_prime_UTR	32258242	32258262	.	-	.	Parent=Os04t0634000-01
Chr04	irgsp1_rep	CDS	32256924	32258241	.	-	0	Parent=Os04t0634000-01
Chr04	irgsp1_rep	CDS	32256641	32256763	.	-	2	Parent=Os04t0634000-01
Chr04	irgsp1_rep	CDS	32255641	32255765	.	-	2	Parent=Os04t0634000-01
Chr04	irgsp1_rep	CDS	32255208	32255424	.	-	0	Parent=Os04t0634000-01
Chr04	irgsp1_rep	CDS	32254864	32255104	.	-	2	Parent=Os04t0634000-01
Chr04	irgsp1_rep	CDS	32254622	32254754	.	-	1	Parent=Os04t0634000-01
Chr04	irgsp1_rep	CDS	32254226	32254540	.	-	0	Parent=Os04t0634000-01
Chr04	irgsp1_rep	three_prime_UTR	32254122	32254225	.	-	.	Parent=Os04t0634000-01
Chr04	irgsp1_rep	mRNA	32273357	32276841	.	-	.	ID=Os04t0634400-00;Name=Os04t0634400-00;Locus_id=Os04g0634400;Note=Similar to H0315F07.5 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q259Z7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os04t0634400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	32275500	32276841	.	-	0	Parent=Os04t0634400-00
Chr04	irgsp1_rep	CDS	32274678	32274802	.	-	2	Parent=Os04t0634400-00
Chr04	irgsp1_rep	CDS	32274304	32274520	.	-	0	Parent=Os04t0634400-00
Chr04	irgsp1_rep	CDS	32273958	32274189	.	-	2	Parent=Os04t0634400-00
Chr04	irgsp1_rep	CDS	32273743	32273875	.	-	1	Parent=Os04t0634400-00
Chr04	irgsp1_rep	CDS	32273357	32273653	.	-	0	Parent=Os04t0634400-00
Chr04	irgsp1_rep	mRNA	32278194	32281408	.	-	.	ID=Os04t0634500-01;Name=Os04t0634500-01;Locus_id=Os04g0634500;CGSNL Gene Symbol=RLCK166;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 166;Oryzabase Gene Symbol Synonym(s)=OsRLCK166;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 166;Note=Similar to H0315F07.6 protein.;Transcript_evidence=AK071656 (DDBJ%2C Best hit);ORF_evidence=Q259Z6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J023103O13;Oryzabase=18869;TENOR=Os04t0634500-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32281207	32281408	.	-	.	Parent=Os04t0634500-01
Chr04	irgsp1_rep	five_prime_UTR	32279911	32280104	.	-	.	Parent=Os04t0634500-01
Chr04	irgsp1_rep	five_prime_UTR	32279678	32279761	.	-	.	Parent=Os04t0634500-01
Chr04	irgsp1_rep	five_prime_UTR	32279266	32279441	.	-	.	Parent=Os04t0634500-01
Chr04	irgsp1_rep	CDS	32279204	32279265	.	-	0	Parent=Os04t0634500-01
Chr04	irgsp1_rep	CDS	32278827	32278977	.	-	1	Parent=Os04t0634500-01
Chr04	irgsp1_rep	CDS	32278426	32278713	.	-	0	Parent=Os04t0634500-01
Chr04	irgsp1_rep	three_prime_UTR	32278194	32278425	.	-	.	Parent=Os04t0634500-01
Chr04	irgsp1_rep	mRNA	32283986	32285649	.	+	.	ID=Os04t0634600-01;Name=Os04t0634600-01;Locus_id=Os04g0634600;Note=Hypothetical gene.;Transcript_evidence=AK061160 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=006-208-H10;Expression=AK061160;TENOR=Os04t0634600-01;KEGG=Os04t0634600-01
Chr04	irgsp1_rep	five_prime_UTR	32283986	32284407	.	+	.	Parent=Os04t0634600-01
Chr04	irgsp1_rep	five_prime_UTR	32284566	32284631	.	+	.	Parent=Os04t0634600-01
Chr04	irgsp1_rep	five_prime_UTR	32284947	32285103	.	+	.	Parent=Os04t0634600-01
Chr04	irgsp1_rep	five_prime_UTR	32285294	32285395	.	+	.	Parent=Os04t0634600-01
Chr04	irgsp1_rep	CDS	32285396	32285629	.	+	0	Parent=Os04t0634600-01
Chr04	irgsp1_rep	three_prime_UTR	32285630	32285649	.	+	.	Parent=Os04t0634600-01
Chr04	irgsp1_rep	mRNA	32286661	32291433	.	+	.	ID=Os04t0634700-01;Name=Os04t0634700-01;Locus_id=Os04g0634700;RAP-DB Gene Symbol Synonym(s)=OsDGK1%2C OsBIDK1;RAP-DB Gene Name Synonym(s)=Diacylglycerol Kinase1%2C benzothiadiazole-induced diacylglycerol kinase 1;CGSNL Gene Symbol=BIDK1;CGSNL Gene Name=BTH-INDUCIBLE DIACYLGLYCEROL KINASE 1;Oryzabase Gene Symbol Synonym(s)=OsBIDK1%2C OsDGK1%2C DGK1;Oryzabase Gene Name Synonym(s)=benzothiadiazole-inducible Diacylglycerol Kinase 1%2C BTH-inducible Diacylglycerol Kinase 1%2C BTH-inducible DGK 1%2C Diacylglycerol kinase 1;Note=Diacylglycerol kinase%2C Root growth and development%2C Disease resistance responses;Transcript_evidence=AK100906;ORF_evidence=Q7XQT2;GO=Biological Process: protein kinase C-activating G protein-coupled receptor signaling pathway (GO:0007205),Molecular Function: NAD+ kinase activity (GO:0003951),Molecular Function: diacylglycerol kinase activity (GO:0004143),Molecular Function: kinase activity (GO:0016301);InterPro=NAD kinase/diacylglycerol kinase-like domain superfamily (IPR016064),Inorganic polyphosphate/ATP-NAD kinase%2C N-terminal (IPR017438),Diacylglycerol kinase%2C plant (IPR016961),Diacylglycerol kinase%2C catalytic domain (IPR001206),Diacylglycerol kinase%2C accessory domain (IPR000756);NIAS_FLcDNA=J023132D04;Manual Curation=April 17%2C 2019;Literature_PMID=30887532,18679055;Oryzabase=15777;Expression=AK100906;TENOR=Os04t0634700-01;KEGG=Os04t0634700-01 (EC:2.7.1.107)
Chr04	irgsp1_rep	five_prime_UTR	32286661	32286951	.	+	.	Parent=Os04t0634700-01
Chr04	irgsp1_rep	five_prime_UTR	32287934	32287934	.	+	.	Parent=Os04t0634700-01
Chr04	irgsp1_rep	CDS	32287935	32288156	.	+	0	Parent=Os04t0634700-01
Chr04	irgsp1_rep	CDS	32288272	32288394	.	+	0	Parent=Os04t0634700-01
Chr04	irgsp1_rep	CDS	32288476	32288604	.	+	0	Parent=Os04t0634700-01
Chr04	irgsp1_rep	CDS	32289024	32289109	.	+	0	Parent=Os04t0634700-01
Chr04	irgsp1_rep	CDS	32289318	32289441	.	+	1	Parent=Os04t0634700-01
Chr04	irgsp1_rep	CDS	32289616	32289664	.	+	0	Parent=Os04t0634700-01
Chr04	irgsp1_rep	CDS	32289893	32289975	.	+	2	Parent=Os04t0634700-01
Chr04	irgsp1_rep	CDS	32290060	32290127	.	+	0	Parent=Os04t0634700-01
Chr04	irgsp1_rep	CDS	32290272	32290349	.	+	1	Parent=Os04t0634700-01
Chr04	irgsp1_rep	CDS	32290545	32290632	.	+	1	Parent=Os04t0634700-01
Chr04	irgsp1_rep	CDS	32290725	32290841	.	+	0	Parent=Os04t0634700-01
Chr04	irgsp1_rep	CDS	32290929	32291261	.	+	0	Parent=Os04t0634700-01
Chr04	irgsp1_rep	three_prime_UTR	32291262	32291433	.	+	.	Parent=Os04t0634700-01
Chr04	irgsp1_rep	mRNA	32294993	32295517	.	+	.	ID=Os04t0634800-01;Name=Os04t0634800-01;Locus_id=Os04g0634800;Note=Similar to H0315F07.8 protein.;Transcript_evidence=AK107772 (DDBJ%2C Best hit);ORF_evidence=Q259Z4 (UniProt);InterPro=Protein of unknown function wound-induced (IPR022251);NIAS_FLcDNA=002-133-B08;Expression=AK107772;TENOR=Os04t0634800-01;KEGG=Os04t0634800-01
Chr04	irgsp1_rep	five_prime_UTR	32294993	32295070	.	+	.	Parent=Os04t0634800-01
Chr04	irgsp1_rep	CDS	32295071	32295355	.	+	0	Parent=Os04t0634800-01
Chr04	irgsp1_rep	three_prime_UTR	32295356	32295517	.	+	.	Parent=Os04t0634800-01
Chr04	irgsp1_rep	mRNA	32296094	32296600	.	-	.	ID=Os04t0634900-01;Name=Os04t0634900-01;Locus_id=Os04g0634900;Note=Similar to H0315F07.9 protein.;Transcript_evidence=AK241270 (DDBJ%2C Best hit);ORF_evidence=Q259Z3 (UniProt);NIAS_FLcDNA=J065132H17;TENOR=Os04t0634900-01;KEGG=Os04t0634900-01
Chr04	irgsp1_rep	five_prime_UTR	32296536	32296600	.	-	.	Parent=Os04t0634900-01
Chr04	irgsp1_rep	CDS	32296263	32296535	.	-	0	Parent=Os04t0634900-01
Chr04	irgsp1_rep	three_prime_UTR	32296094	32296262	.	-	.	Parent=Os04t0634900-01
Chr04	irgsp1_rep	mRNA	32297571	32298126	.	-	.	ID=Os04t0635000-01;Name=Os04t0635000-01;Locus_id=Os04g0635000;Note=Similar to H0315F07.10 protein.;Transcript_evidence=AK062619 (DDBJ%2C Best hit);ORF_evidence=Q259Z2 (UniProt);InterPro=Protein of unknown function wound-induced (IPR022251);NIAS_FLcDNA=001-105-B06;Expression=AK062619;TENOR=Os04t0635000-01;KEGG=Os04t0635000-01
Chr04	irgsp1_rep	five_prime_UTR	32298027	32298126	.	-	.	Parent=Os04t0635000-01
Chr04	irgsp1_rep	CDS	32297733	32298026	.	-	0	Parent=Os04t0635000-01
Chr04	irgsp1_rep	three_prime_UTR	32297571	32297732	.	-	.	Parent=Os04t0635000-01
Chr04	irgsp1_rep	mRNA	32301933	32302446	.	-	.	ID=Os04t0635100-00;Name=Os04t0635100-00;Locus_id=Os04g0635100;Note=Similar to H0315F07.12 protein.;Transcript_evidence=EU958617 (DDBJ);ORF_evidence=Q259Z0 (UniProt);InterPro=Protein of unknown function wound-induced (IPR022251);TENOR=Os04t0635100-00;KEGG=Os04t0635100-00
Chr04	irgsp1_rep	five_prime_UTR	32302355	32302446	.	-	.	Parent=Os04t0635100-00
Chr04	irgsp1_rep	CDS	32302094	32302354	.	-	0	Parent=Os04t0635100-00
Chr04	irgsp1_rep	three_prime_UTR	32301933	32302093	.	-	.	Parent=Os04t0635100-00
Chr04	irgsp1_rep	mRNA	32302189	32302553	.	+	.	ID=Os04t0635201-00;Name=Os04t0635201-00;Locus_id=Os04g0635201;Note=Non-protein coding transcript.;Transcript_evidence=EU971799 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0635201-00
Chr04	irgsp1_rep	exon	32302189	32302553	.	+	.	Parent=Os04t0635201-00
Chr04	irgsp1_rep	mRNA	32323642	32323989	.	+	.	ID=Os04t0635350-00;Name=Os04t0635350-00;Locus_id=Os04g0635350;Note=Non-protein coding transcript.;Transcript_evidence=EU971799 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0635350-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	exon	32323642	32323989	.	+	.	Parent=Os04t0635350-00
Chr04	irgsp1_rep	mRNA	32331495	32331990	.	-	.	ID=Os04t0635400-00;Name=Os04t0635400-00;Locus_id=Os04g0635400;Note=Conserved hypothetical protein.;Transcript_evidence=CT837507 (DDBJ%2C Best hit);ORF_evidence=NP_001054007.2 (RefSeq);TENOR=Os04t0635400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32331975	32331990	.	-	.	Parent=Os04t0635400-00
Chr04	irgsp1_rep	CDS	32331648	32331974	.	-	0	Parent=Os04t0635400-00
Chr04	irgsp1_rep	three_prime_UTR	32331495	32331647	.	-	.	Parent=Os04t0635400-00
Chr04	irgsp1_rep	mRNA	32331657	32332138	.	+	.	ID=Os04t0635450-00;Name=Os04t0635450-00;Locus_id=Os04g0635450;Note=Non-protein coding transcript.;Transcript_evidence=EU971799 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0635450-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	exon	32331657	32332138	.	+	.	Parent=Os04t0635450-00
Chr04	irgsp1_rep	mRNA	32333452	32333991	.	-	.	ID=Os04t0635500-01;Name=Os04t0635500-01;Locus_id=Os04g0635500;Note=Similar to Wound induced protein (Fragment).;Transcript_evidence=AK069933 (DDBJ%2C Best hit),AK119684 (DDBJ%2C Best hit);ORF_evidence=Q25AA7 (UniProt);InterPro=Protein of unknown function wound-induced (IPR022251);NIAS_FLcDNA=J023036C16,002-157-A03;TENOR=Os04t0635500-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32333875	32333991	.	-	.	Parent=Os04t0635500-01
Chr04	irgsp1_rep	CDS	32333611	32333874	.	-	0	Parent=Os04t0635500-01
Chr04	irgsp1_rep	three_prime_UTR	32333452	32333610	.	-	.	Parent=Os04t0635500-01
Chr04	irgsp1_rep	mRNA	32337766	32338128	.	+	.	ID=Os04t0635650-00;Name=Os04t0635650-00;Locus_id=Os04g0635650;Note=Non-protein coding transcript.;Transcript_evidence=EU971799 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0635650-00
Chr04	irgsp1_rep	exon	32337766	32338128	.	+	.	Parent=Os04t0635650-00
Chr04	irgsp1_rep	mRNA	32338417	32339534	.	+	.	ID=Os04t0635700-01;Name=Os04t0635700-01;Locus_id=Os04g0635700;Note=Aldehyde dehydrogenase%2C conserved site domain containing protein.;Transcript_evidence=AK062025 (DDBJ%2C Best hit),AK098916 (DDBJ%2C Best hit);ORF_evidence=Q25AA5 (UniProt);NIAS_FLcDNA=001-043-G04,J013002J07;TENOR=Os04t0635700-01
Chr04	irgsp1_rep	five_prime_UTR	32338417	32338509	.	+	.	Parent=Os04t0635700-01
Chr04	irgsp1_rep	CDS	32338510	32338612	.	+	0	Parent=Os04t0635700-01
Chr04	irgsp1_rep	CDS	32338699	32338925	.	+	2	Parent=Os04t0635700-01
Chr04	irgsp1_rep	CDS	32339069	32339230	.	+	0	Parent=Os04t0635700-01
Chr04	irgsp1_rep	three_prime_UTR	32339231	32339534	.	+	.	Parent=Os04t0635700-01
Chr04	irgsp1_rep	mRNA	32339714	32342396	.	-	.	ID=Os04t0635800-01;Name=Os04t0635800-01;Locus_id=Os04g0635800;Note=Acyl-CoA N-acyltransferase domain containing protein.;Transcript_evidence=AK104741 (DDBJ%2C Best hit),AK060110 (DDBJ%2C Best hit),AK099507 (DDBJ%2C Best hit);ORF_evidence=Q25AA4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: N-acetyltransferase activity (GO:0008080);InterPro=GCN5-related N-acetyltransferase (GNAT) domain (IPR000182),Acyl-CoA N-acyltransferase (IPR016181);NIAS_FLcDNA=001-038-E01,006-308-D03,J013029B17;Expression=AK104741;TENOR=Os04t0635800-01;KEGG=Os04t0635800-01
Chr04	irgsp1_rep	five_prime_UTR	32342322	32342396	.	-	.	Parent=Os04t0635800-01
Chr04	irgsp1_rep	CDS	32341725	32342321	.	-	0	Parent=Os04t0635800-01
Chr04	irgsp1_rep	three_prime_UTR	32341722	32341724	.	-	.	Parent=Os04t0635800-01
Chr04	irgsp1_rep	three_prime_UTR	32339714	32340052	.	-	.	Parent=Os04t0635800-01
Chr04	irgsp1_rep	mRNA	32340848	32342393	.	-	.	ID=Os04t0635800-03;Name=Os04t0635800-03;Locus_id=Os04g0635800;Note=Acyl-CoA N-acyltransferase domain containing protein.;Transcript_evidence=AK120021 (DDBJ%2C Best hit);ORF_evidence=Q25AA4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: N-acetyltransferase activity (GO:0008080);InterPro=GCN5-related N-acetyltransferase (GNAT) domain (IPR000182),Acyl-CoA N-acyltransferase (IPR016181);NIAS_FLcDNA=002-186-C03;Expression=AK120021;TENOR=Os04t0635800-03;KEGG=Os04t0635800-03
Chr04	irgsp1_rep	five_prime_UTR	32342322	32342393	.	-	.	Parent=Os04t0635800-03
Chr04	irgsp1_rep	CDS	32341725	32342321	.	-	0	Parent=Os04t0635800-03
Chr04	irgsp1_rep	three_prime_UTR	32340848	32341724	.	-	.	Parent=Os04t0635800-03
Chr04	irgsp1_rep	mRNA	32342580	32348393	.	+	.	ID=Os04t0635900-01;Name=Os04t0635900-01;Locus_id=Os04g0635900;Oryzabase Gene Symbol Synonym(s)=MRE11%2C OsMRE11;Note=DNA repair exonuclease family protein.;Transcript_evidence=AK070546 (DDBJ%2C Best hit);ORF_evidence=Q25AA3 (UniProt);GO=Biological Process: DNA metabolic process (GO:0006259),Biological Process: double-strand break repair (GO:0006302),Cellular Component: nucleus (GO:0005634),Molecular Function: endonuclease activity (GO:0004519),Molecular Function: exonuclease activity (GO:0004527),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: manganese ion binding (GO:0030145);InterPro=DNA repair exonuclease (IPR003701),Metallophosphoesterase domain (IPR004843),Mre11%2C DNA-binding (IPR007281);NIAS_FLcDNA=J023054N24;Oryzabase=11612;Expression=AK070546;TENOR=Os04t0635900-01;KEGG=Os04t0635900-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32342580	32342821	.	+	.	Parent=Os04t0635900-01
Chr04	irgsp1_rep	five_prime_UTR	32342970	32343027	.	+	.	Parent=Os04t0635900-01
Chr04	irgsp1_rep	CDS	32343028	32343029	.	+	0	Parent=Os04t0635900-01
Chr04	irgsp1_rep	CDS	32343260	32343395	.	+	1	Parent=Os04t0635900-01
Chr04	irgsp1_rep	CDS	32343533	32343690	.	+	0	Parent=Os04t0635900-01
Chr04	irgsp1_rep	CDS	32343885	32343975	.	+	1	Parent=Os04t0635900-01
Chr04	irgsp1_rep	CDS	32344069	32344188	.	+	0	Parent=Os04t0635900-01
Chr04	irgsp1_rep	CDS	32344260	32344328	.	+	0	Parent=Os04t0635900-01
Chr04	irgsp1_rep	CDS	32344448	32344539	.	+	0	Parent=Os04t0635900-01
Chr04	irgsp1_rep	CDS	32344672	32344774	.	+	1	Parent=Os04t0635900-01
Chr04	irgsp1_rep	CDS	32344855	32344962	.	+	0	Parent=Os04t0635900-01
Chr04	irgsp1_rep	CDS	32345043	32345105	.	+	0	Parent=Os04t0635900-01
Chr04	irgsp1_rep	CDS	32345167	32345238	.	+	0	Parent=Os04t0635900-01
Chr04	irgsp1_rep	CDS	32345416	32345493	.	+	0	Parent=Os04t0635900-01
Chr04	irgsp1_rep	CDS	32345572	32345634	.	+	0	Parent=Os04t0635900-01
Chr04	irgsp1_rep	CDS	32345711	32345774	.	+	0	Parent=Os04t0635900-01
Chr04	irgsp1_rep	CDS	32345911	32345996	.	+	2	Parent=Os04t0635900-01
Chr04	irgsp1_rep	CDS	32346550	32346663	.	+	0	Parent=Os04t0635900-01
Chr04	irgsp1_rep	CDS	32346854	32346931	.	+	0	Parent=Os04t0635900-01
Chr04	irgsp1_rep	CDS	32347006	32347074	.	+	0	Parent=Os04t0635900-01
Chr04	irgsp1_rep	CDS	32347162	32347397	.	+	0	Parent=Os04t0635900-01
Chr04	irgsp1_rep	CDS	32347579	32347669	.	+	1	Parent=Os04t0635900-01
Chr04	irgsp1_rep	CDS	32347799	32347987	.	+	0	Parent=Os04t0635900-01
Chr04	irgsp1_rep	CDS	32348175	32348210	.	+	0	Parent=Os04t0635900-01
Chr04	irgsp1_rep	three_prime_UTR	32348211	32348393	.	+	.	Parent=Os04t0635900-01
Chr04	irgsp1_rep	mRNA	32348493	32351851	.	-	.	ID=Os04t0636000-01;Name=Os04t0636000-01;Locus_id=Os04g0636000;Note=Similar to H0410G08.12 protein.;Transcript_evidence=AK099615 (DDBJ%2C Best hit);ORF_evidence=Q25AA2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=SPla/RYanodine receptor SPRY (IPR003877),Concanavalin A-like lectin/glucanase (IPR008985);NIAS_FLcDNA=J013050J08;TENOR=Os04t0636000-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32351727	32351851	.	-	.	Parent=Os04t0636000-01
Chr04	irgsp1_rep	CDS	32351594	32351726	.	-	0	Parent=Os04t0636000-01
Chr04	irgsp1_rep	CDS	32350743	32351509	.	-	2	Parent=Os04t0636000-01
Chr04	irgsp1_rep	CDS	32350480	32350668	.	-	0	Parent=Os04t0636000-01
Chr04	irgsp1_rep	CDS	32350256	32350364	.	-	0	Parent=Os04t0636000-01
Chr04	irgsp1_rep	CDS	32350100	32350158	.	-	2	Parent=Os04t0636000-01
Chr04	irgsp1_rep	CDS	32349909	32350019	.	-	0	Parent=Os04t0636000-01
Chr04	irgsp1_rep	CDS	32349125	32349803	.	-	0	Parent=Os04t0636000-01
Chr04	irgsp1_rep	CDS	32348706	32348812	.	-	2	Parent=Os04t0636000-01
Chr04	irgsp1_rep	three_prime_UTR	32348493	32348705	.	-	.	Parent=Os04t0636000-01
Chr04	irgsp1_rep	mRNA	32348410	32351774	.	-	.	ID=Os04t0636000-02;Name=Os04t0636000-02;Locus_id=Os04g0636000;Note=Similar to H0410G08.12 protein.;Transcript_evidence=AK065639 (DDBJ%2C Best hit);ORF_evidence=Q25AA2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=SPla/RYanodine receptor SPRY (IPR003877),Concanavalin A-like lectin/glucanase (IPR008985);NIAS_FLcDNA=J013035H03;TENOR=Os04t0636000-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32351727	32351774	.	-	.	Parent=Os04t0636000-02
Chr04	irgsp1_rep	CDS	32351594	32351726	.	-	0	Parent=Os04t0636000-02
Chr04	irgsp1_rep	CDS	32350743	32351509	.	-	2	Parent=Os04t0636000-02
Chr04	irgsp1_rep	CDS	32350480	32350668	.	-	0	Parent=Os04t0636000-02
Chr04	irgsp1_rep	CDS	32350256	32350364	.	-	0	Parent=Os04t0636000-02
Chr04	irgsp1_rep	CDS	32350100	32350158	.	-	2	Parent=Os04t0636000-02
Chr04	irgsp1_rep	CDS	32349909	32350019	.	-	0	Parent=Os04t0636000-02
Chr04	irgsp1_rep	CDS	32349125	32349803	.	-	0	Parent=Os04t0636000-02
Chr04	irgsp1_rep	CDS	32348706	32348812	.	-	2	Parent=Os04t0636000-02
Chr04	irgsp1_rep	three_prime_UTR	32348410	32348705	.	-	.	Parent=Os04t0636000-02
Chr04	irgsp1_rep	mRNA	32353487	32355998	.	+	.	ID=Os04t0636100-01;Name=Os04t0636100-01;Locus_id=Os04g0636100;CGSNL Gene Symbol=GAUT9;CGSNL Gene Name=GALACTURONOSYLTRANSFERASE 9;Oryzabase Gene Symbol Synonym(s)=OsGAUT9;Oryzabase Gene Name Synonym(s)=galacturonosyltransferase 9;Note=Glycosyl transferase%2C family 8 protein.;Transcript_evidence=AK067760 (DDBJ%2C Best hit);ORF_evidence=Q25AA1 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 8 (IPR002495);NIAS_FLcDNA=J013119I03;Oryzabase=23269;Expression=AK067760;TENOR=Os04t0636100-01;KEGG=Os04t0636100-01
Chr04	irgsp1_rep	five_prime_UTR	32353487	32353779	.	+	.	Parent=Os04t0636100-01
Chr04	irgsp1_rep	CDS	32353780	32354001	.	+	0	Parent=Os04t0636100-01
Chr04	irgsp1_rep	CDS	32354139	32355587	.	+	0	Parent=Os04t0636100-01
Chr04	irgsp1_rep	three_prime_UTR	32355588	32355998	.	+	.	Parent=Os04t0636100-01
Chr04	irgsp1_rep	mRNA	32356297	32358756	.	-	.	ID=Os04t0636200-01;Name=Os04t0636200-01;Locus_id=Os04g0636200;Note=Hpt domain containing protein.;Transcript_evidence=AK102214 (DDBJ%2C Best hit);ORF_evidence=Q25AA0 (UniProt);NIAS_FLcDNA=J033087K04;TENOR=Os04t0636200-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32358739	32358756	.	-	.	Parent=Os04t0636200-01
Chr04	irgsp1_rep	CDS	32358565	32358738	.	-	0	Parent=Os04t0636200-01
Chr04	irgsp1_rep	CDS	32356515	32357681	.	-	0	Parent=Os04t0636200-01
Chr04	irgsp1_rep	three_prime_UTR	32356297	32356514	.	-	.	Parent=Os04t0636200-01
Chr04	irgsp1_rep	mRNA	32359905	32362614	.	-	.	ID=Os04t0636300-01;Name=Os04t0636300-01;Locus_id=Os04g0636300;Note=Similar to H0410G08.15 protein.;Transcript_evidence=AK111459 (DDBJ%2C Best hit);ORF_evidence=Q25A99 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Cys/Met metabolism%2C pyridoxal phosphate-dependent enzyme (IPR000277),Aluminium resistance (IPR009651),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=002-183-C10;TENOR=Os04t0636300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32362614	32362614	.	-	.	Parent=Os04t0636300-01
Chr04	irgsp1_rep	CDS	32362431	32362613	.	-	0	Parent=Os04t0636300-01
Chr04	irgsp1_rep	CDS	32362228	32362338	.	-	0	Parent=Os04t0636300-01
Chr04	irgsp1_rep	CDS	32361958	32362020	.	-	0	Parent=Os04t0636300-01
Chr04	irgsp1_rep	CDS	32361749	32361862	.	-	0	Parent=Os04t0636300-01
Chr04	irgsp1_rep	CDS	32361553	32361657	.	-	0	Parent=Os04t0636300-01
Chr04	irgsp1_rep	three_prime_UTR	32361515	32361552	.	-	.	Parent=Os04t0636300-01
Chr04	irgsp1_rep	three_prime_UTR	32361330	32361407	.	-	.	Parent=Os04t0636300-01
Chr04	irgsp1_rep	three_prime_UTR	32361040	32361261	.	-	.	Parent=Os04t0636300-01
Chr04	irgsp1_rep	three_prime_UTR	32360858	32360944	.	-	.	Parent=Os04t0636300-01
Chr04	irgsp1_rep	three_prime_UTR	32360537	32360656	.	-	.	Parent=Os04t0636300-01
Chr04	irgsp1_rep	three_prime_UTR	32360159	32360251	.	-	.	Parent=Os04t0636300-01
Chr04	irgsp1_rep	three_prime_UTR	32359905	32360050	.	-	.	Parent=Os04t0636300-01
Chr04	irgsp1_rep	mRNA	32363010	32365037	.	+	.	ID=Os04t0636400-01;Name=Os04t0636400-01;Locus_id=Os04g0636400;Note=Similar to H0410G08.16 protein.;Transcript_evidence=AK061848 (DDBJ%2C Best hit),AK099573 (DDBJ%2C Best hit);ORF_evidence=Q25A98 (UniProt);GO=Biological Process: DNA catabolic process (GO:0006308),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: endonuclease activity (GO:0004519),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=S1/P1 nuclease (IPR003154),Phospholipase C/P1 nuclease%2C core (IPR008947);NIAS_FLcDNA=001-040-F04,J013035J20;TENOR=Os04t0636400-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32363010	32363037	.	+	.	Parent=Os04t0636400-01
Chr04	irgsp1_rep	CDS	32363038	32363166	.	+	0	Parent=Os04t0636400-01
Chr04	irgsp1_rep	CDS	32363247	32363427	.	+	0	Parent=Os04t0636400-01
Chr04	irgsp1_rep	CDS	32363538	32363645	.	+	2	Parent=Os04t0636400-01
Chr04	irgsp1_rep	CDS	32363759	32363814	.	+	2	Parent=Os04t0636400-01
Chr04	irgsp1_rep	CDS	32363902	32363985	.	+	0	Parent=Os04t0636400-01
Chr04	irgsp1_rep	CDS	32364088	32364183	.	+	0	Parent=Os04t0636400-01
Chr04	irgsp1_rep	CDS	32364288	32364352	.	+	0	Parent=Os04t0636400-01
Chr04	irgsp1_rep	CDS	32364458	32364531	.	+	1	Parent=Os04t0636400-01
Chr04	irgsp1_rep	CDS	32364618	32364742	.	+	2	Parent=Os04t0636400-01
Chr04	irgsp1_rep	three_prime_UTR	32364743	32365037	.	+	.	Parent=Os04t0636400-01
Chr04	irgsp1_rep	mRNA	32365686	32369961	.	+	.	ID=Os04t0636500-01;Name=Os04t0636500-01;Locus_id=Os04g0636500;Note=BTB domain containing protein.;Transcript_evidence=AK109716 (DDBJ%2C Best hit);ORF_evidence=B6U264 (UniProt);GO=Biological Process: response to light stimulus (GO:0009416),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),NPH3 (IPR004249),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069);NIAS_FLcDNA=002-145-H10;Expression=AK109716;TENOR=Os04t0636500-01;KEGG=Os04t0636500-01
Chr04	irgsp1_rep	five_prime_UTR	32365686	32365998	.	+	.	Parent=Os04t0636500-01
Chr04	irgsp1_rep	CDS	32365999	32366066	.	+	0	Parent=Os04t0636500-01
Chr04	irgsp1_rep	CDS	32366596	32366665	.	+	1	Parent=Os04t0636500-01
Chr04	irgsp1_rep	CDS	32367044	32368267	.	+	0	Parent=Os04t0636500-01
Chr04	irgsp1_rep	CDS	32369196	32369768	.	+	0	Parent=Os04t0636500-01
Chr04	irgsp1_rep	three_prime_UTR	32369769	32369961	.	+	.	Parent=Os04t0636500-01
Chr04	irgsp1_rep	mRNA	32367770	32369714	.	-	.	ID=Os04t0636550-00;Name=Os04t0636550-00;Locus_id=Os04g0636550;Note=Hypothetical protein.;Transcript_evidence=tplb0043h08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0636550-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	32369213	32369714	.	-	0	Parent=Os04t0636550-00
Chr04	irgsp1_rep	CDS	32368142	32368278	.	-	2	Parent=Os04t0636550-00
Chr04	irgsp1_rep	CDS	32367979	32368089	.	-	0	Parent=Os04t0636550-00
Chr04	irgsp1_rep	three_prime_UTR	32367770	32367978	.	-	.	Parent=Os04t0636550-00
Chr04	irgsp1_rep	mRNA	32376117	32378265	.	-	.	ID=Os04t0636600-01;Name=Os04t0636600-01;Locus_id=Os04g0636600;Note=Hypothetical conserved gene.;Transcript_evidence=AK111077 (DDBJ%2C Best hit);ORF_evidence=Q7XND3 (UniProt);GO=Cellular Component: integral to mitochondrial inner membrane (GO:0031305);InterPro=Mitochondrial inner membrane protein Mitofilin (IPR019133);NIAS_FLcDNA=002-175-E12;TENOR=Os04t0636600-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32378072	32378265	.	-	.	Parent=Os04t0636600-01
Chr04	irgsp1_rep	CDS	32378061	32378071	.	-	0	Parent=Os04t0636600-01
Chr04	irgsp1_rep	CDS	32377907	32377970	.	-	1	Parent=Os04t0636600-01
Chr04	irgsp1_rep	CDS	32376117	32376546	.	-	0	Parent=Os04t0636600-01
Chr04	irgsp1_rep	mRNA	32370472	32378256	.	-	.	ID=Os04t0636600-02;Name=Os04t0636600-02;Locus_id=Os04g0636600;Note=Mitochondrial inner membrane protein Mitofilin domain containing protein.;Transcript_evidence=AK073550 (DDBJ%2C Best hit);ORF_evidence=A2XY09 (UniProt);GO=Cellular Component: integral to mitochondrial inner membrane (GO:0031305);InterPro=Mitochondrial inner membrane protein Mitofilin (IPR019133);NIAS_FLcDNA=J033044F09;TENOR=Os04t0636600-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32378072	32378256	.	-	.	Parent=Os04t0636600-02
Chr04	irgsp1_rep	CDS	32378061	32378071	.	-	0	Parent=Os04t0636600-02
Chr04	irgsp1_rep	CDS	32377907	32377970	.	-	1	Parent=Os04t0636600-02
Chr04	irgsp1_rep	CDS	32375869	32376546	.	-	0	Parent=Os04t0636600-02
Chr04	irgsp1_rep	CDS	32375053	32375136	.	-	0	Parent=Os04t0636600-02
Chr04	irgsp1_rep	CDS	32374769	32374924	.	-	0	Parent=Os04t0636600-02
Chr04	irgsp1_rep	CDS	32374464	32374539	.	-	0	Parent=Os04t0636600-02
Chr04	irgsp1_rep	CDS	32373859	32373899	.	-	2	Parent=Os04t0636600-02
Chr04	irgsp1_rep	three_prime_UTR	32373807	32373858	.	-	.	Parent=Os04t0636600-02
Chr04	irgsp1_rep	three_prime_UTR	32373595	32373714	.	-	.	Parent=Os04t0636600-02
Chr04	irgsp1_rep	three_prime_UTR	32372117	32372194	.	-	.	Parent=Os04t0636600-02
Chr04	irgsp1_rep	three_prime_UTR	32371825	32372004	.	-	.	Parent=Os04t0636600-02
Chr04	irgsp1_rep	three_prime_UTR	32371471	32371572	.	-	.	Parent=Os04t0636600-02
Chr04	irgsp1_rep	three_prime_UTR	32370472	32371040	.	-	.	Parent=Os04t0636600-02
Chr04	irgsp1_rep	mRNA	32378971	32382044	.	-	.	ID=Os04t0636700-01;Name=Os04t0636700-01;Locus_id=Os04g0636700;Note=Similar to 117M18_7.;Transcript_evidence=AK101731 (DDBJ%2C Best hit);ORF_evidence=Q4AC18 (UniProt);InterPro=RNA polymerase II%2C large subunit%2C CTD (IPR006569),Domain of unknown function DUF618 (IPR006903),ENTH/VHS (IPR008942);NIAS_FLcDNA=J033061G09;TENOR=Os04t0636700-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32381827	32382044	.	-	.	Parent=Os04t0636700-01
Chr04	irgsp1_rep	CDS	32381748	32381826	.	-	0	Parent=Os04t0636700-01
Chr04	irgsp1_rep	CDS	32380953	32381200	.	-	2	Parent=Os04t0636700-01
Chr04	irgsp1_rep	CDS	32380611	32380772	.	-	0	Parent=Os04t0636700-01
Chr04	irgsp1_rep	CDS	32380356	32380512	.	-	0	Parent=Os04t0636700-01
Chr04	irgsp1_rep	CDS	32380130	32380272	.	-	2	Parent=Os04t0636700-01
Chr04	irgsp1_rep	CDS	32379994	32380029	.	-	0	Parent=Os04t0636700-01
Chr04	irgsp1_rep	CDS	32379139	32379900	.	-	0	Parent=Os04t0636700-01
Chr04	irgsp1_rep	three_prime_UTR	32378971	32379138	.	-	.	Parent=Os04t0636700-01
Chr04	irgsp1_rep	mRNA	32378707	32379306	.	-	.	ID=Os04t0636700-02;Name=Os04t0636700-02;Locus_id=Os04g0636700;Note=Hypothetical conserved gene.;Transcript_evidence=AK059474 (DDBJ%2C Best hit);ORF_evidence=Q7XND2 (UniProt);NIAS_FLcDNA=001-028-E07;TENOR=Os04t0636700-02;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	32379139	32379306	.	-	0	Parent=Os04t0636700-02
Chr04	irgsp1_rep	three_prime_UTR	32378707	32379138	.	-	.	Parent=Os04t0636700-02
Chr04	irgsp1_rep	mRNA	32383989	32384679	.	+	.	ID=Os04t0636750-00;Name=Os04t0636750-00;Locus_id=Os04g0636750;Note=Hypothetical gene.;Transcript_evidence=BT019296 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0636750-00;KEGG=Os04t0636750-00
Chr04	irgsp1_rep	five_prime_UTR	32383989	32384238	.	+	.	Parent=Os04t0636750-00
Chr04	irgsp1_rep	CDS	32384239	32384652	.	+	0	Parent=Os04t0636750-00
Chr04	irgsp1_rep	three_prime_UTR	32384653	32384679	.	+	.	Parent=Os04t0636750-00
Chr04	irgsp1_rep	mRNA	32384028	32387076	.	-	.	ID=Os04t0636800-01;Name=Os04t0636800-01;Locus_id=Os04g0636800;Note=Conserved hypothetical protein.;Transcript_evidence=AK104813 (DDBJ%2C Best hit),AK064789 (DDBJ%2C Best hit);ORF_evidence=NP_001054021.1 (RefSeq);NIAS_FLcDNA=001-040-G08,J013000C05;TENOR=Os04t0636800-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	32386929	32387076	.	-	0	Parent=Os04t0636800-01
Chr04	irgsp1_rep	CDS	32386248	32386363	.	-	2	Parent=Os04t0636800-01
Chr04	irgsp1_rep	CDS	32384249	32384677	.	-	0	Parent=Os04t0636800-01
Chr04	irgsp1_rep	three_prime_UTR	32384028	32384248	.	-	.	Parent=Os04t0636800-01
Chr04	irgsp1_rep	mRNA	32390669	32392487	.	-	.	ID=Os04t0636900-01;Name=Os04t0636900-01;Locus_id=Os04g0636900;Note=RNA-binding region RNP-1  (RNA recognition motif) domain containing protein.;Transcript_evidence=AK058405 (DDBJ%2C Best hit);ORF_evidence=B6SXV2 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-015-B10;Expression=AK058405;TENOR=Os04t0636900-01;KEGG=Os04t0636900-01
Chr04	irgsp1_rep	five_prime_UTR	32392403	32392487	.	-	.	Parent=Os04t0636900-01
Chr04	irgsp1_rep	CDS	32390855	32392402	.	-	0	Parent=Os04t0636900-01
Chr04	irgsp1_rep	three_prime_UTR	32390669	32390854	.	-	.	Parent=Os04t0636900-01
Chr04	irgsp1_rep	mRNA	32390377	32392459	.	-	.	ID=Os04t0636900-02;Name=Os04t0636900-02;Locus_id=Os04g0636900;Note=RNA-binding region RNP-1  (RNA recognition motif) domain containing protein.;Transcript_evidence=AK101408 (DDBJ%2C Best hit),AK065789 (DDBJ%2C Best hit),AK119286 (DDBJ%2C Best hit);ORF_evidence=Q7XTU5 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033037I12,J013042J24,001-130-C12;TENOR=Os04t0636900-02
Chr04	irgsp1_rep	five_prime_UTR	32392403	32392459	.	-	.	Parent=Os04t0636900-02
Chr04	irgsp1_rep	CDS	32390855	32392402	.	-	0	Parent=Os04t0636900-02
Chr04	irgsp1_rep	three_prime_UTR	32390377	32390854	.	-	.	Parent=Os04t0636900-02
Chr04	irgsp1_rep	mRNA	32403357	32412036	.	+	.	ID=Os04t0637000-01;Name=Os04t0637000-01;Locus_id=Os04g0637000;RAP-DB Gene Symbol Synonym(s)=OsTGAP1%2C OsbZIP37;RAP-DB Gene Name Synonym(s)=bZIP transcription factor 37;CGSNL Gene Symbol=BZIP37;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 37;Oryzabase Gene Symbol Synonym(s)=OsTGAP1%2C TGAP1%2C OsbZIP37;Oryzabase Gene Name Synonym(s)=TGA factor for phytoalexin production 1%2C bZIP transcription factor 37;Note=TGA-type bZIP Transcription Factor%2C Regulation of diterpenoid phytoalexin production%2C Defense response;Transcript_evidence=AK073715;ORF_evidence=A0A0P0WFC8;GO=Biological Process: transcription%2C DNA-templated (GO:0006351),Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Basic-leucine zipper domain (IPR004827),Transcription factor TGA like domain (IPR025422);NIAS_FLcDNA=J033059P06;Manual Curation=June 20%2C 2018;Literature_PMID=28857222,19635799,18065552;Oryzabase=10124;Expression=AK073715;TENOR=Os04t0637000-01;KEGG=Os04t0637000-01;Subcellular location=nucleus (GO:0005634)
Chr04	irgsp1_rep	five_prime_UTR	32403357	32403478	.	+	.	Parent=Os04t0637000-01
Chr04	irgsp1_rep	five_prime_UTR	32405540	32405709	.	+	.	Parent=Os04t0637000-01
Chr04	irgsp1_rep	five_prime_UTR	32406475	32406511	.	+	.	Parent=Os04t0637000-01
Chr04	irgsp1_rep	CDS	32406512	32406564	.	+	0	Parent=Os04t0637000-01
Chr04	irgsp1_rep	CDS	32409579	32409768	.	+	1	Parent=Os04t0637000-01
Chr04	irgsp1_rep	CDS	32409897	32409971	.	+	0	Parent=Os04t0637000-01
Chr04	irgsp1_rep	CDS	32410157	32410216	.	+	0	Parent=Os04t0637000-01
Chr04	irgsp1_rep	CDS	32410328	32410405	.	+	0	Parent=Os04t0637000-01
Chr04	irgsp1_rep	CDS	32410494	32410557	.	+	0	Parent=Os04t0637000-01
Chr04	irgsp1_rep	CDS	32410671	32410951	.	+	2	Parent=Os04t0637000-01
Chr04	irgsp1_rep	CDS	32411078	32411311	.	+	0	Parent=Os04t0637000-01
Chr04	irgsp1_rep	CDS	32411400	32411558	.	+	0	Parent=Os04t0637000-01
Chr04	irgsp1_rep	three_prime_UTR	32411559	32412036	.	+	.	Parent=Os04t0637000-01
Chr04	irgsp1_rep	mRNA	32403369	32412059	.	+	.	ID=Os04t0637000-02;Name=Os04t0637000-02;Locus_id=Os04g0637000;CGSNL Gene Symbol=BZIP37;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 37;Oryzabase Gene Symbol Synonym(s)=OsTGAP1%2C TGAP1%2C OsbZIP37;Oryzabase Gene Name Synonym(s)=TGA factor for phytoalexin production 1%2C bZIP transcription factor 37;Note=Similar to Basic leucine zipper protein (Liguleless2).;Transcript_evidence=AK066906 (DDBJ%2C Best hit);ORF_evidence=B7EMK6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);NIAS_FLcDNA=J013091P09;Oryzabase=10124;Expression=AK066906;TENOR=Os04t0637000-02;KEGG=Os04t0637000-02
Chr04	irgsp1_rep	five_prime_UTR	32403369	32403927	.	+	.	Parent=Os04t0637000-02
Chr04	irgsp1_rep	five_prime_UTR	32404047	32404147	.	+	.	Parent=Os04t0637000-02
Chr04	irgsp1_rep	five_prime_UTR	32405540	32405709	.	+	.	Parent=Os04t0637000-02
Chr04	irgsp1_rep	five_prime_UTR	32406475	32406511	.	+	.	Parent=Os04t0637000-02
Chr04	irgsp1_rep	CDS	32406512	32406564	.	+	0	Parent=Os04t0637000-02
Chr04	irgsp1_rep	CDS	32409579	32409768	.	+	1	Parent=Os04t0637000-02
Chr04	irgsp1_rep	CDS	32409897	32409971	.	+	0	Parent=Os04t0637000-02
Chr04	irgsp1_rep	CDS	32410157	32410216	.	+	0	Parent=Os04t0637000-02
Chr04	irgsp1_rep	CDS	32410328	32410417	.	+	0	Parent=Os04t0637000-02
Chr04	irgsp1_rep	three_prime_UTR	32410418	32410557	.	+	.	Parent=Os04t0637000-02
Chr04	irgsp1_rep	three_prime_UTR	32410671	32410951	.	+	.	Parent=Os04t0637000-02
Chr04	irgsp1_rep	three_prime_UTR	32411078	32411311	.	+	.	Parent=Os04t0637000-02
Chr04	irgsp1_rep	three_prime_UTR	32411400	32412059	.	+	.	Parent=Os04t0637000-02
Chr04	irgsp1_rep	mRNA	32413589	32413636	.	-	.	ID=Os04t0637150-00;Name=Os04t0637150-00;Locus_id=Os04g0637150;Note=Non-protein coding transcript.;Transcript_evidence=X02683 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0637150-00
Chr04	irgsp1_rep	exon	32413589	32413636	.	-	.	Parent=Os04t0637150-00
Chr04	irgsp1_rep	mRNA	32414780	32415613	.	+	.	ID=Os04t0637300-01;Name=Os04t0637300-01;Locus_id=Os04g0637300;RAP-DB Gene Symbol Synonym(s)=OsEFP1;RAP-DB Gene Name Synonym(s)=EPIDERMAL PATTERNING FACTOR1;CGSNL Gene Symbol=EPF1;CGSNL Gene Name=EPIDERMAL PATTERNING FACTOR 1;Oryzabase Gene Symbol Synonym(s)=OsEPF1;Oryzabase Gene Name Synonym(s)=epidermal patterning factor 1;Note=Regulation of leaf stomatal development and patterning%2C Development of root cortical aerenchyma;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;Manual Curation=May 24%2C 2019;Literature_PMID=30944383,30043395;Oryzabase=22667;TENOR=Os04t0637300-00;KEGG=Os04t0637300-00
Chr04	irgsp1_rep	five_prime_UTR	32414780	32414850	.	+	.	Parent=Os04t0637300-01
Chr04	irgsp1_rep	CDS	32414851	32414962	.	+	0	Parent=Os04t0637300-01
Chr04	irgsp1_rep	CDS	32415217	32415302	.	+	2	Parent=Os04t0637300-01
Chr04	irgsp1_rep	CDS	32415404	32415613	.	+	0	Parent=Os04t0637300-01
Chr04	irgsp1_rep	mRNA	32419840	32423901	.	+	.	ID=Os04t0637400-01;Name=Os04t0637400-01;Locus_id=Os04g0637400;Oryzabase Gene Name Synonym(s)=Pol I-like;Note=Similar to PolI-like DNA polymerase.;Transcript_evidence=AK065360 (DDBJ%2C Best hit);ORF_evidence=Q8S9E2 (UniProt);GO=Biological Process: DNA replication (GO:0006260),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed DNA polymerase activity (GO:0003887);InterPro=DNA-directed DNA polymerase%2C family A%2C palm domain (IPR001098),DNA polymerase A (IPR002298);NIAS_FLcDNA=J013009A21;Oryzabase=21291;Expression=AK065360;TENOR=Os04t0637400-01;KEGG=Os04t0637400-01
Chr04	irgsp1_rep	five_prime_UTR	32419840	32419840	.	+	.	Parent=Os04t0637400-01
Chr04	irgsp1_rep	CDS	32419841	32420157	.	+	0	Parent=Os04t0637400-01
Chr04	irgsp1_rep	CDS	32420647	32421070	.	+	1	Parent=Os04t0637400-01
Chr04	irgsp1_rep	CDS	32421191	32421286	.	+	0	Parent=Os04t0637400-01
Chr04	irgsp1_rep	CDS	32422009	32422101	.	+	0	Parent=Os04t0637400-01
Chr04	irgsp1_rep	CDS	32422193	32422387	.	+	0	Parent=Os04t0637400-01
Chr04	irgsp1_rep	CDS	32422470	32422562	.	+	0	Parent=Os04t0637400-01
Chr04	irgsp1_rep	CDS	32422810	32423022	.	+	0	Parent=Os04t0637400-01
Chr04	irgsp1_rep	CDS	32423107	32423196	.	+	0	Parent=Os04t0637400-01
Chr04	irgsp1_rep	CDS	32423331	32423492	.	+	0	Parent=Os04t0637400-01
Chr04	irgsp1_rep	three_prime_UTR	32423493	32423901	.	+	.	Parent=Os04t0637400-01
Chr04	irgsp1_rep	mRNA	32424262	32425566	.	-	.	ID=Os04t0637500-01;Name=Os04t0637500-01;Locus_id=Os04g0637500;Note=Mitochodrial transcription termination factor-related family protein.;Transcript_evidence=AK108202 (DDBJ%2C Best hit);ORF_evidence=B8AV66 (UniProt);InterPro=Mitochodrial transcription termination factor-related (IPR003690);NIAS_FLcDNA=002-140-D01;Expression=AK108202;TENOR=Os04t0637500-01;KEGG=Os04t0637500-01
Chr04	irgsp1_rep	five_prime_UTR	32425561	32425566	.	-	.	Parent=Os04t0637500-01
Chr04	irgsp1_rep	CDS	32424379	32425560	.	-	0	Parent=Os04t0637500-01
Chr04	irgsp1_rep	three_prime_UTR	32424262	32424378	.	-	.	Parent=Os04t0637500-01
Chr04	irgsp1_rep	mRNA	32448789	32450307	.	-	.	ID=Os04t0638100-01;Name=Os04t0638100-01;Locus_id=Os04g0638100;Note=Transferase family protein.;Transcript_evidence=AK103592 (DDBJ%2C Best hit);ORF_evidence=NP_001147723.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J033133D10;Expression=AK103592;TENOR=Os04t0638100-01;KEGG=Os04t0638100-01
Chr04	irgsp1_rep	five_prime_UTR	32450288	32450307	.	-	.	Parent=Os04t0638100-01
Chr04	irgsp1_rep	CDS	32449637	32450287	.	-	0	Parent=Os04t0638100-01
Chr04	irgsp1_rep	CDS	32448855	32449538	.	-	0	Parent=Os04t0638100-01
Chr04	irgsp1_rep	three_prime_UTR	32448789	32448854	.	-	.	Parent=Os04t0638100-01
Chr04	irgsp1_rep	mRNA	32450527	32451807	.	+	.	ID=Os04t0638300-01;Name=Os04t0638300-01;Locus_id=Os04g0638300;Note=Hypothetical protein.;Transcript_evidence=AK100418 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023088A15;Expression=AK100418;TENOR=Os04t0638300-01;KEGG=Os04t0638300-01
Chr04	irgsp1_rep	five_prime_UTR	32450527	32450816	.	+	.	Parent=Os04t0638300-01
Chr04	irgsp1_rep	CDS	32450817	32451206	.	+	0	Parent=Os04t0638300-01
Chr04	irgsp1_rep	three_prime_UTR	32451207	32451807	.	+	.	Parent=Os04t0638300-01
Chr04	irgsp1_rep	mRNA	32453293	32455327	.	-	.	ID=Os04t0638401-00;Name=Os04t0638401-00;Locus_id=Os04g0638401;Note=Similar to transferase.;Transcript_evidence=tplb0015b13 (Wheat FLcDNA);ORF_evidence=NP_001147723.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os04t0638401-00;KEGG=Os04t0638401-00
Chr04	irgsp1_rep	five_prime_UTR	32455311	32455327	.	-	.	Parent=Os04t0638401-00
Chr04	irgsp1_rep	CDS	32454648	32455310	.	-	0	Parent=Os04t0638401-00
Chr04	irgsp1_rep	CDS	32453645	32453962	.	-	0	Parent=Os04t0638401-00
Chr04	irgsp1_rep	three_prime_UTR	32453293	32453644	.	-	.	Parent=Os04t0638401-00
Chr04	irgsp1_rep	mRNA	32457062	32457692	.	+	.	ID=Os04t0638600-00;Name=Os04t0638600-00;Locus_id=Os04g0638600;Note=Hypothetical conserved gene.;Transcript_evidence=AK365420 (DDBJ);ORF_evidence=Q7X7F9 (UniProt);TENOR=Os04t0638600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	32457062	32457643	.	+	0	Parent=Os04t0638600-00
Chr04	irgsp1_rep	three_prime_UTR	32457644	32457692	.	+	.	Parent=Os04t0638600-00
Chr04	irgsp1_rep	mRNA	32459623	32460498	.	-	.	ID=Os04t0638700-01;Name=Os04t0638700-01;Locus_id=Os04g0638700;CGSNL Gene Symbol=PEP1;CGSNL Gene Name=PLANT ELICITOR PEPTIDE 1;Oryzabase Gene Symbol Synonym(s)=OsPep1%2C Pep1%2C OsPROPEP1%2C PROPEP1;Oryzabase Gene Name Synonym(s)=plant elicitor peptide 1;Note=Conserved hypothetical protein.;Transcript_evidence=AK062886 (DDBJ%2C Best hit);ORF_evidence=B8AV68 (UniProt);NIAS_FLcDNA=001-108-D10;Oryzabase=22465;Expression=AK062886;TENOR=Os04t0638700-01;KEGG=Os04t0638700-01
Chr04	irgsp1_rep	five_prime_UTR	32460357	32460498	.	-	.	Parent=Os04t0638700-01
Chr04	irgsp1_rep	CDS	32459988	32460356	.	-	0	Parent=Os04t0638700-01
Chr04	irgsp1_rep	CDS	32459795	32459905	.	-	0	Parent=Os04t0638700-01
Chr04	irgsp1_rep	three_prime_UTR	32459623	32459794	.	-	.	Parent=Os04t0638700-01
Chr04	irgsp1_rep	mRNA	32464933	32466032	.	+	.	ID=Os04t0638800-01;Name=Os04t0638800-01;Locus_id=Os04g0638800;Note=Protein of unknown function DUF617%2C plant family protein.;Transcript_evidence=AK071753 (DDBJ%2C Best hit),AK070319 (DDBJ%2C Best hit);ORF_evidence=NP_001150128.1 (RefSeq);InterPro=Protein of unknown function DUF617%2C plant (IPR006460);NIAS_FLcDNA=J023110I06,J023050M24;Expression=AK071753;TENOR=Os04t0638800-01;KEGG=Os04t0638800-01
Chr04	irgsp1_rep	five_prime_UTR	32464933	32465057	.	+	.	Parent=Os04t0638800-01
Chr04	irgsp1_rep	CDS	32465058	32465963	.	+	0	Parent=Os04t0638800-01
Chr04	irgsp1_rep	three_prime_UTR	32465964	32466032	.	+	.	Parent=Os04t0638800-01
Chr04	irgsp1_rep	mRNA	32473520	32474170	.	+	.	ID=Os04t0638901-00;Name=Os04t0638901-00;Locus_id=Os04g0638901;Note=Non-protein coding transcript.;Transcript_evidence=EU945716 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0638901-00
Chr04	irgsp1_rep	exon	32473520	32473782	.	+	.	Parent=Os04t0638901-00
Chr04	irgsp1_rep	exon	32473980	32474170	.	+	.	Parent=Os04t0638901-00
Chr04	irgsp1_rep	mRNA	32476494	32477199	.	+	.	ID=Os04t0639000-01;Name=Os04t0639000-01;Locus_id=Os04g0639000;Note=Conserved hypothetical protein.;Transcript_evidence=AK121265 (DDBJ%2C Best hit);ORF_evidence=B8AV69 (UniProt);NIAS_FLcDNA=J023105D11;Expression=AK121265;TENOR=Os04t0639000-01;KEGG=Os04t0639000-01
Chr04	irgsp1_rep	five_prime_UTR	32476494	32476611	.	+	.	Parent=Os04t0639000-01
Chr04	irgsp1_rep	CDS	32476612	32476734	.	+	0	Parent=Os04t0639000-01
Chr04	irgsp1_rep	CDS	32476847	32476909	.	+	0	Parent=Os04t0639000-01
Chr04	irgsp1_rep	three_prime_UTR	32476910	32477199	.	+	.	Parent=Os04t0639000-01
Chr04	irgsp1_rep	mRNA	32478683	32479514	.	+	.	ID=Os04t0639100-01;Name=Os04t0639100-01;Locus_id=Os04g0639100;Note=Conserved hypothetical protein.;Transcript_evidence=AK063036 (DDBJ%2C Best hit);ORF_evidence=Q7XPH6 (UniProt);NIAS_FLcDNA=001-110-C11;TENOR=Os04t0639100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32478683	32479099	.	+	.	Parent=Os04t0639100-01
Chr04	irgsp1_rep	CDS	32479100	32479294	.	+	0	Parent=Os04t0639100-01
Chr04	irgsp1_rep	three_prime_UTR	32479295	32479514	.	+	.	Parent=Os04t0639100-01
Chr04	irgsp1_rep	mRNA	32481008	32482342	.	+	.	ID=Os04t0639200-01;Name=Os04t0639200-01;Locus_id=Os04g0639200;Note=Similar to OSIGBa0138H21-OSIGBa0138E01.1 protein.;Transcript_evidence=AK070786 (DDBJ%2C Best hit);ORF_evidence=Q01HX2 (UniProt);InterPro=Chlorophyll A-B binding protein (IPR022796),Chlorophyll a/b binding protein domain (IPR023329);NIAS_FLcDNA=J023064M09;TENOR=Os04t0639200-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32481008	32481116	.	+	.	Parent=Os04t0639200-01
Chr04	irgsp1_rep	CDS	32481117	32481431	.	+	0	Parent=Os04t0639200-01
Chr04	irgsp1_rep	CDS	32481508	32481777	.	+	0	Parent=Os04t0639200-01
Chr04	irgsp1_rep	three_prime_UTR	32481778	32482342	.	+	.	Parent=Os04t0639200-01
Chr04	irgsp1_rep	mRNA	32483088	32484417	.	-	.	ID=Os04t0639300-01;Name=Os04t0639300-01;Locus_id=Os04g0639300;Note=Conserved hypothetical protein.;Transcript_evidence=AK058483 (DDBJ%2C Best hit);ORF_evidence=Q7XPH4 (UniProt);NIAS_FLcDNA=001-016-D06;Expression=AK058483;TENOR=Os04t0639300-01;KEGG=Os04t0639300-01
Chr04	irgsp1_rep	five_prime_UTR	32484417	32484417	.	-	.	Parent=Os04t0639300-01
Chr04	irgsp1_rep	CDS	32484391	32484416	.	-	0	Parent=Os04t0639300-01
Chr04	irgsp1_rep	CDS	32484035	32484123	.	-	1	Parent=Os04t0639300-01
Chr04	irgsp1_rep	CDS	32483832	32483961	.	-	2	Parent=Os04t0639300-01
Chr04	irgsp1_rep	CDS	32483559	32483649	.	-	1	Parent=Os04t0639300-01
Chr04	irgsp1_rep	CDS	32483386	32483451	.	-	0	Parent=Os04t0639300-01
Chr04	irgsp1_rep	CDS	32483165	32483284	.	-	0	Parent=Os04t0639300-01
Chr04	irgsp1_rep	three_prime_UTR	32483088	32483164	.	-	.	Parent=Os04t0639300-01
Chr04	irgsp1_rep	mRNA	32525473	32530003	.	-	.	ID=Os04t0639700-00;Name=Os04t0639700-00;Locus_id=Os04g0639700;Note=Similar to OSIGBa0138H21-OSIGBa0138E01.9 protein.;Transcript_evidence=AK243114 (DDBJ%2C Best hit);ORF_evidence=Q01HX4 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase C48%2C SUMO/Sentrin/Ubl1 (IPR003653);NIAS_FLcDNA=J100027F06;TENOR=Os04t0639700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32530002	32530003	.	-	.	Parent=Os04t0639700-00
Chr04	irgsp1_rep	CDS	32529975	32530001	.	-	0	Parent=Os04t0639700-00
Chr04	irgsp1_rep	CDS	32529774	32529902	.	-	0	Parent=Os04t0639700-00
Chr04	irgsp1_rep	CDS	32529602	32529694	.	-	0	Parent=Os04t0639700-00
Chr04	irgsp1_rep	CDS	32529410	32529526	.	-	0	Parent=Os04t0639700-00
Chr04	irgsp1_rep	CDS	32529234	32529334	.	-	0	Parent=Os04t0639700-00
Chr04	irgsp1_rep	CDS	32528877	32529165	.	-	1	Parent=Os04t0639700-00
Chr04	irgsp1_rep	CDS	32528175	32528386	.	-	0	Parent=Os04t0639700-00
Chr04	irgsp1_rep	CDS	32528016	32528097	.	-	1	Parent=Os04t0639700-00
Chr04	irgsp1_rep	CDS	32527192	32527943	.	-	0	Parent=Os04t0639700-00
Chr04	irgsp1_rep	CDS	32526936	32527107	.	-	1	Parent=Os04t0639700-00
Chr04	irgsp1_rep	CDS	32526249	32526335	.	-	0	Parent=Os04t0639700-00
Chr04	irgsp1_rep	CDS	32525852	32526169	.	-	0	Parent=Os04t0639700-00
Chr04	irgsp1_rep	CDS	32525640	32525765	.	-	0	Parent=Os04t0639700-00
Chr04	irgsp1_rep	three_prime_UTR	32525473	32525639	.	-	.	Parent=Os04t0639700-00
Chr04	irgsp1_rep	mRNA	32532834	32537644	.	+	.	ID=Os04t0639800-01;Name=Os04t0639800-01;Locus_id=Os04g0639800;Note=Similar to OSIGBa0138H21-OSIGBa0138E01.9 protein.;Transcript_evidence=AK243114 (DDBJ%2C Secondary hit);ORF_evidence=Q01HX4 (UniProt);TENOR=Os04t0639800-01;KEGG=Os04t0639800-01
Chr04	irgsp1_rep	five_prime_UTR	32532834	32532835	.	+	.	Parent=Os04t0639800-01
Chr04	irgsp1_rep	CDS	32532836	32532862	.	+	0	Parent=Os04t0639800-01
Chr04	irgsp1_rep	CDS	32532935	32533063	.	+	0	Parent=Os04t0639800-01
Chr04	irgsp1_rep	CDS	32533143	32533235	.	+	0	Parent=Os04t0639800-01
Chr04	irgsp1_rep	CDS	32533311	32533427	.	+	0	Parent=Os04t0639800-01
Chr04	irgsp1_rep	CDS	32533503	32533603	.	+	0	Parent=Os04t0639800-01
Chr04	irgsp1_rep	CDS	32533672	32533735	.	+	1	Parent=Os04t0639800-01
Chr04	irgsp1_rep	three_prime_UTR	32533736	32533961	.	+	.	Parent=Os04t0639800-01
Chr04	irgsp1_rep	three_prime_UTR	32534452	32534663	.	+	.	Parent=Os04t0639800-01
Chr04	irgsp1_rep	three_prime_UTR	32534741	32534822	.	+	.	Parent=Os04t0639800-01
Chr04	irgsp1_rep	three_prime_UTR	32534895	32535646	.	+	.	Parent=Os04t0639800-01
Chr04	irgsp1_rep	three_prime_UTR	32535731	32535902	.	+	.	Parent=Os04t0639800-01
Chr04	irgsp1_rep	three_prime_UTR	32536503	32536589	.	+	.	Parent=Os04t0639800-01
Chr04	irgsp1_rep	three_prime_UTR	32536669	32536986	.	+	.	Parent=Os04t0639800-01
Chr04	irgsp1_rep	three_prime_UTR	32537073	32537644	.	+	.	Parent=Os04t0639800-01
Chr04	irgsp1_rep	mRNA	32552545	32556339	.	+	.	ID=Os04t0640200-01;Name=Os04t0640200-01;Locus_id=Os04g0640200;Note=Conserved hypothetical protein.;Transcript_evidence=AK103423 (DDBJ%2C Best hit);ORF_evidence=Q7XPG4 (UniProt);NIAS_FLcDNA=J033128K14;Expression=AK103423;TENOR=Os04t0640200-01;KEGG=Os04t0640200-01
Chr04	irgsp1_rep	CDS	32552545	32552844	.	+	0	Parent=Os04t0640200-01
Chr04	irgsp1_rep	three_prime_UTR	32552845	32555825	.	+	.	Parent=Os04t0640200-01
Chr04	irgsp1_rep	three_prime_UTR	32556092	32556339	.	+	.	Parent=Os04t0640200-01
Chr04	irgsp1_rep	mRNA	32556981	32565405	.	-	.	ID=Os04t0640300-01;Name=Os04t0640300-01;Locus_id=Os04g0640300;Note=Similar to OSIGBa0138H21-OSIGBa0138E01.10 protein.;Transcript_evidence=AK074005 (DDBJ%2C Best hit);ORF_evidence=Q01HY6 (UniProt);NIAS_FLcDNA=J033076C24;Expression=AK074005;TENOR=Os04t0640300-01;KEGG=Os04t0640300-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32565265	32565405	.	-	.	Parent=Os04t0640300-01
Chr04	irgsp1_rep	CDS	32565114	32565264	.	-	0	Parent=Os04t0640300-01
Chr04	irgsp1_rep	CDS	32558133	32558353	.	-	2	Parent=Os04t0640300-01
Chr04	irgsp1_rep	CDS	32557058	32557639	.	-	0	Parent=Os04t0640300-01
Chr04	irgsp1_rep	three_prime_UTR	32556981	32557057	.	-	.	Parent=Os04t0640300-01
Chr04	irgsp1_rep	mRNA	32574405	32581634	.	+	.	ID=Os04t0640500-01;Name=Os04t0640500-01;Locus_id=Os04g0640500;Note=ABC-1 domain containing protein.;Transcript_evidence=AK070519 (DDBJ%2C Best hit);ORF_evidence=Q01HY4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),ABC-1 (IPR004147),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J023056A15;Expression=AK070519;TENOR=Os04t0640500-01;KEGG=Os04t0640500-01
Chr04	irgsp1_rep	five_prime_UTR	32574405	32574532	.	+	.	Parent=Os04t0640500-01
Chr04	irgsp1_rep	CDS	32574533	32574925	.	+	0	Parent=Os04t0640500-01
Chr04	irgsp1_rep	CDS	32575045	32575089	.	+	0	Parent=Os04t0640500-01
Chr04	irgsp1_rep	CDS	32575184	32575222	.	+	0	Parent=Os04t0640500-01
Chr04	irgsp1_rep	CDS	32575474	32575644	.	+	0	Parent=Os04t0640500-01
Chr04	irgsp1_rep	CDS	32576134	32576286	.	+	0	Parent=Os04t0640500-01
Chr04	irgsp1_rep	CDS	32576454	32576489	.	+	0	Parent=Os04t0640500-01
Chr04	irgsp1_rep	CDS	32577297	32577340	.	+	0	Parent=Os04t0640500-01
Chr04	irgsp1_rep	CDS	32577682	32577772	.	+	1	Parent=Os04t0640500-01
Chr04	irgsp1_rep	CDS	32577859	32577900	.	+	0	Parent=Os04t0640500-01
Chr04	irgsp1_rep	CDS	32577996	32578104	.	+	0	Parent=Os04t0640500-01
Chr04	irgsp1_rep	CDS	32578253	32578367	.	+	2	Parent=Os04t0640500-01
Chr04	irgsp1_rep	CDS	32578446	32578495	.	+	1	Parent=Os04t0640500-01
Chr04	irgsp1_rep	CDS	32578669	32578747	.	+	2	Parent=Os04t0640500-01
Chr04	irgsp1_rep	CDS	32578855	32578905	.	+	1	Parent=Os04t0640500-01
Chr04	irgsp1_rep	CDS	32579058	32579199	.	+	1	Parent=Os04t0640500-01
Chr04	irgsp1_rep	CDS	32579407	32579451	.	+	0	Parent=Os04t0640500-01
Chr04	irgsp1_rep	CDS	32579726	32579833	.	+	0	Parent=Os04t0640500-01
Chr04	irgsp1_rep	CDS	32579935	32579976	.	+	0	Parent=Os04t0640500-01
Chr04	irgsp1_rep	CDS	32580480	32580662	.	+	0	Parent=Os04t0640500-01
Chr04	irgsp1_rep	CDS	32581024	32581143	.	+	0	Parent=Os04t0640500-01
Chr04	irgsp1_rep	CDS	32581273	32581377	.	+	0	Parent=Os04t0640500-01
Chr04	irgsp1_rep	three_prime_UTR	32581378	32581634	.	+	.	Parent=Os04t0640500-01
Chr04	irgsp1_rep	mRNA	32582187	32585691	.	-	.	ID=Os04t0640600-01;Name=Os04t0640600-01;Locus_id=Os04g0640600;Oryzabase Gene Symbol Synonym(s)=OsSK3%2C SK3;Oryzabase Gene Name Synonym(s)=Shikimate kinase 3;Note=Shikimate kinase.;Transcript_evidence=AK070318 (DDBJ%2C Best hit);ORF_evidence=Q01HY3 (UniProt);GO=Molecular Function: shikimate kinase activity (GO:0004765),Molecular Function: ATP binding (GO:0005524);InterPro=Shikimate kinase (IPR000623);NIAS_FLcDNA=J023052O21;Oryzabase=11365;Expression=AK070318;TENOR=Os04t0640600-01;KEGG=Os04t0640600-01
Chr04	irgsp1_rep	five_prime_UTR	32585514	32585691	.	-	.	Parent=Os04t0640600-01
Chr04	irgsp1_rep	CDS	32585324	32585513	.	-	0	Parent=Os04t0640600-01
Chr04	irgsp1_rep	CDS	32583892	32583938	.	-	2	Parent=Os04t0640600-01
Chr04	irgsp1_rep	CDS	32583726	32583780	.	-	0	Parent=Os04t0640600-01
Chr04	irgsp1_rep	CDS	32583570	32583642	.	-	2	Parent=Os04t0640600-01
Chr04	irgsp1_rep	CDS	32583384	32583471	.	-	1	Parent=Os04t0640600-01
Chr04	irgsp1_rep	CDS	32582922	32583038	.	-	0	Parent=Os04t0640600-01
Chr04	irgsp1_rep	three_prime_UTR	32582909	32582921	.	-	.	Parent=Os04t0640600-01
Chr04	irgsp1_rep	three_prime_UTR	32582746	32582824	.	-	.	Parent=Os04t0640600-01
Chr04	irgsp1_rep	three_prime_UTR	32582523	32582587	.	-	.	Parent=Os04t0640600-01
Chr04	irgsp1_rep	three_prime_UTR	32582187	32582449	.	-	.	Parent=Os04t0640600-01
Chr04	irgsp1_rep	mRNA	32582189	32584822	.	-	.	ID=Os04t0640600-02;Name=Os04t0640600-02;Locus_id=Os04g0640600;Oryzabase Gene Symbol Synonym(s)=OsSK3%2C SK3;Oryzabase Gene Name Synonym(s)=Shikimate kinase 3;Note=Similar to OSIGBa0138H21-OSIGBa0138E01.13 protein.;Transcript_evidence=AK067948 (DDBJ%2C Best hit);ORF_evidence=Q01HY3 (UniProt);GO=Molecular Function: shikimate kinase activity (GO:0004765),Molecular Function: ATP binding (GO:0005524);InterPro=Shikimate kinase (IPR000623);NIAS_FLcDNA=J013123F09;Oryzabase=11365;Expression=AK067948;TENOR=Os04t0640600-02;KEGG=Os04t0640600-02 (EC:2.7.1.71)
Chr04	irgsp1_rep	five_prime_UTR	32583964	32584822	.	-	.	Parent=Os04t0640600-02
Chr04	irgsp1_rep	CDS	32583892	32583963	.	-	0	Parent=Os04t0640600-02
Chr04	irgsp1_rep	CDS	32583726	32583780	.	-	0	Parent=Os04t0640600-02
Chr04	irgsp1_rep	CDS	32583554	32583642	.	-	2	Parent=Os04t0640600-02
Chr04	irgsp1_rep	three_prime_UTR	32582909	32583553	.	-	.	Parent=Os04t0640600-02
Chr04	irgsp1_rep	three_prime_UTR	32582746	32582824	.	-	.	Parent=Os04t0640600-02
Chr04	irgsp1_rep	three_prime_UTR	32582523	32582587	.	-	.	Parent=Os04t0640600-02
Chr04	irgsp1_rep	three_prime_UTR	32582189	32582449	.	-	.	Parent=Os04t0640600-02
Chr04	irgsp1_rep	mRNA	32589116	32595893	.	-	.	ID=Os04t0640700-01;Name=Os04t0640700-01;Locus_id=Os04g0640700;Oryzabase Gene Name Synonym(s)=Glycosyl hydrolase 3 family protein;Note=Similar to Alpha-L-arabinofuranosidase/beta-D-xylosidase isoenzyme ARA-I.;Transcript_evidence=AK101782 (DDBJ%2C Best hit);ORF_evidence=Q01HY2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 3%2C N-terminal (IPR001764),Glycoside hydrolase%2C family 3%2C C-terminal (IPR002772),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J033065A06;Oryzabase=19108;Expression=AK101782;TENOR=Os04t0640700-01;KEGG=Os04t0640700-01
Chr04	irgsp1_rep	five_prime_UTR	32595727	32595893	.	-	.	Parent=Os04t0640700-01
Chr04	irgsp1_rep	CDS	32595319	32595726	.	-	0	Parent=Os04t0640700-01
Chr04	irgsp1_rep	CDS	32593226	32593510	.	-	0	Parent=Os04t0640700-01
Chr04	irgsp1_rep	CDS	32591974	32592143	.	-	0	Parent=Os04t0640700-01
Chr04	irgsp1_rep	CDS	32591763	32591860	.	-	1	Parent=Os04t0640700-01
Chr04	irgsp1_rep	CDS	32590640	32590987	.	-	2	Parent=Os04t0640700-01
Chr04	irgsp1_rep	CDS	32590127	32590543	.	-	2	Parent=Os04t0640700-01
Chr04	irgsp1_rep	CDS	32589470	32590041	.	-	2	Parent=Os04t0640700-01
Chr04	irgsp1_rep	three_prime_UTR	32589116	32589469	.	-	.	Parent=Os04t0640700-01
Chr04	irgsp1_rep	mRNA	32589152	32591853	.	-	.	ID=Os04t0640700-02;Name=Os04t0640700-02;Locus_id=Os04g0640700;Oryzabase Gene Name Synonym(s)=Glycosyl hydrolase 3 family protein;Note=Similar to OSIGBa0138H21-OSIGBa0138E01.14 protein.;Transcript_evidence=AK071973 (DDBJ%2C Best hit);ORF_evidence=Q01HY2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 3%2C C-terminal (IPR002772);NIAS_FLcDNA=J013088J07;Oryzabase=19108;TENOR=Os04t0640700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32591763	32591853	.	-	.	Parent=Os04t0640700-02
Chr04	irgsp1_rep	five_prime_UTR	32590872	32590987	.	-	.	Parent=Os04t0640700-02
Chr04	irgsp1_rep	CDS	32590640	32590871	.	-	0	Parent=Os04t0640700-02
Chr04	irgsp1_rep	CDS	32590127	32590543	.	-	2	Parent=Os04t0640700-02
Chr04	irgsp1_rep	CDS	32589470	32590041	.	-	2	Parent=Os04t0640700-02
Chr04	irgsp1_rep	three_prime_UTR	32589152	32589469	.	-	.	Parent=Os04t0640700-02
Chr04	irgsp1_rep	mRNA	32589855	32595699	.	+	.	ID=Os04t0640750-00;Name=Os04t0640750-00;Locus_id=Os04g0640750;Note=Hypothetical protein.;Transcript_evidence=tplb0030f15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0640750-00
Chr04	irgsp1_rep	five_prime_UTR	32589855	32590048	.	+	.	Parent=Os04t0640750-00
Chr04	irgsp1_rep	five_prime_UTR	32590130	32590539	.	+	.	Parent=Os04t0640750-00
Chr04	irgsp1_rep	five_prime_UTR	32590628	32591000	.	+	.	Parent=Os04t0640750-00
Chr04	irgsp1_rep	five_prime_UTR	32591894	32592122	.	+	.	Parent=Os04t0640750-00
Chr04	irgsp1_rep	five_prime_UTR	32593205	32593207	.	+	.	Parent=Os04t0640750-00
Chr04	irgsp1_rep	CDS	32593208	32593538	.	+	0	Parent=Os04t0640750-00
Chr04	irgsp1_rep	CDS	32595353	32595699	.	+	2	Parent=Os04t0640750-00
Chr04	irgsp1_rep	mRNA	32600395	32603306	.	+	.	ID=Os04t0640800-01;Name=Os04t0640800-01;Locus_id=Os04g0640800;Note=Programmed cell death protein 2%2C C-terminal domain containing protein.;Transcript_evidence=AK065522 (DDBJ%2C Best hit);ORF_evidence=Q01HY1 (UniProt);GO=Cellular Component: cytoplasm (GO:0005737);InterPro=Programmed cell death protein 2%2C C-terminal (IPR007320);NIAS_FLcDNA=J013026G17;Expression=AK065522;TENOR=Os04t0640800-01;KEGG=Os04t0640800-01
Chr04	irgsp1_rep	five_prime_UTR	32600395	32600562	.	+	.	Parent=Os04t0640800-01
Chr04	irgsp1_rep	CDS	32600563	32600658	.	+	0	Parent=Os04t0640800-01
Chr04	irgsp1_rep	CDS	32600890	32600968	.	+	0	Parent=Os04t0640800-01
Chr04	irgsp1_rep	CDS	32601189	32601285	.	+	2	Parent=Os04t0640800-01
Chr04	irgsp1_rep	CDS	32601382	32601677	.	+	1	Parent=Os04t0640800-01
Chr04	irgsp1_rep	CDS	32601757	32601985	.	+	2	Parent=Os04t0640800-01
Chr04	irgsp1_rep	CDS	32602111	32602315	.	+	1	Parent=Os04t0640800-01
Chr04	irgsp1_rep	CDS	32602843	32602929	.	+	0	Parent=Os04t0640800-01
Chr04	irgsp1_rep	three_prime_UTR	32602930	32603306	.	+	.	Parent=Os04t0640800-01
Chr04	irgsp1_rep	mRNA	32605050	32605609	.	+	.	ID=Os04t0640850-00;Name=Os04t0640850-00;Locus_id=Os04g0640850;Note=Non-protein coding transcript.;Transcript_evidence=CU405950 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os04t0640850-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	exon	32605050	32605160	.	+	.	Parent=Os04t0640850-00
Chr04	irgsp1_rep	exon	32605245	32605609	.	+	.	Parent=Os04t0640850-00
Chr04	irgsp1_rep	mRNA	32606375	32608648	.	+	.	ID=Os04t0640900-01;Name=Os04t0640900-01;Locus_id=Os04g0640900;CGSNL Gene Symbol=IIP5;CGSNL Gene Name=ILA1 INTERACTING PROTEIN 5;Oryzabase Gene Symbol Synonym(s)=IIP5;Oryzabase Gene Name Synonym(s)=ILA1 interacting protein 5;Note=Similar to ORW1943Ba0077G13.1 protein.;Transcript_evidence=AK062582 (DDBJ%2C Best hit);ORF_evidence=F2QA78 (UniProt);NIAS_FLcDNA=001-100-C11;Oryzabase=10226;TENOR=Os04t0640900-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32606375	32606506	.	+	.	Parent=Os04t0640900-01
Chr04	irgsp1_rep	CDS	32606507	32608420	.	+	0	Parent=Os04t0640900-01
Chr04	irgsp1_rep	three_prime_UTR	32608421	32608648	.	+	.	Parent=Os04t0640900-01
Chr04	irgsp1_rep	mRNA	32609882	32618921	.	+	.	ID=Os04t0641000-01;Name=Os04t0641000-01;Locus_id=Os04g0641000;Note=Similar to DNA-directed RNA polymerase.;Transcript_evidence=AK121416 (DDBJ%2C Best hit);ORF_evidence=C5WRS0 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899),Molecular Function: ribonucleoside binding (GO:0032549);InterPro=DNA-directed RNA polymerase%2C subunit 2%2C domain 6 (IPR007120),RNA polymerase%2C beta subunit%2C conserved site (IPR007121),RNA polymerase Rpb2%2C domain 7 (IPR007641),RNA polymerase Rpb2%2C domain 2 (IPR007642),RNA polymerase%2C beta subunit%2C protrusion (IPR007644),RNA polymerase Rpb2%2C domain 3 (IPR007645),RNA polymerase Rpb2%2C domain 4 (IPR007646),RNA polymerase Rpb2%2C domain 5 (IPR007647),RNA polymerase Rpb2%2C OB-fold (IPR014724),DNA-directed RNA polymerase%2C subunit 2 (IPR015712);NIAS_FLcDNA=J023133G05;TENOR=Os04t0641000-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32609882	32610005	.	+	.	Parent=Os04t0641000-01
Chr04	irgsp1_rep	five_prime_UTR	32611615	32611631	.	+	.	Parent=Os04t0641000-01
Chr04	irgsp1_rep	CDS	32611632	32612219	.	+	0	Parent=Os04t0641000-01
Chr04	irgsp1_rep	CDS	32612794	32613000	.	+	0	Parent=Os04t0641000-01
Chr04	irgsp1_rep	CDS	32613779	32614659	.	+	0	Parent=Os04t0641000-01
Chr04	irgsp1_rep	CDS	32614734	32615025	.	+	1	Parent=Os04t0641000-01
Chr04	irgsp1_rep	CDS	32615750	32616766	.	+	0	Parent=Os04t0641000-01
Chr04	irgsp1_rep	CDS	32617427	32617698	.	+	0	Parent=Os04t0641000-01
Chr04	irgsp1_rep	CDS	32618085	32618586	.	+	1	Parent=Os04t0641000-01
Chr04	irgsp1_rep	three_prime_UTR	32618587	32618921	.	+	.	Parent=Os04t0641000-01
Chr04	irgsp1_rep	mRNA	32615972	32618925	.	+	.	ID=Os04t0641000-02;Name=Os04t0641000-02;Locus_id=Os04g0641000;Note=Similar to DNA-directed RNA polymerase.;Transcript_evidence=AK058580 (DDBJ%2C Best hit);ORF_evidence=C5Y8Y9 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899),Molecular Function: ribonucleoside binding (GO:0032549);InterPro=DNA-directed RNA polymerase%2C subunit 2%2C domain 6 (IPR007120),RNA polymerase%2C beta subunit%2C conserved site (IPR007121),RNA polymerase Rpb2%2C domain 7 (IPR007641),RNA polymerase Rpb2%2C OB-fold (IPR014724),DNA-directed RNA polymerase%2C subunit 2 (IPR015712);NIAS_FLcDNA=001-017-F06;TENOR=Os04t0641000-02;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32615972	32615992	.	+	.	Parent=Os04t0641000-02
Chr04	irgsp1_rep	CDS	32615993	32616766	.	+	0	Parent=Os04t0641000-02
Chr04	irgsp1_rep	CDS	32617427	32617698	.	+	0	Parent=Os04t0641000-02
Chr04	irgsp1_rep	CDS	32618085	32618586	.	+	1	Parent=Os04t0641000-02
Chr04	irgsp1_rep	three_prime_UTR	32618587	32618925	.	+	.	Parent=Os04t0641000-02
Chr04	irgsp1_rep	mRNA	32619579	32619813	.	-	.	ID=Os04t0641101-01;Name=Os04t0641101-01;Locus_id=Os04g0641101;Note=Non-protein coding transcript.;Transcript_evidence=AK242368 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080035A07;TENOR=Os04t0641101-01
Chr04	irgsp1_rep	exon	32619579	32619813	.	-	.	Parent=Os04t0641101-01
Chr04	irgsp1_rep	mRNA	32625806	32629133	.	+	.	ID=Os04t0641200-01;Name=Os04t0641200-01;Locus_id=Os04g0641200;CGSNL Gene Symbol=PME16;CGSNL Gene Name=PECTIN METHYLESTERASE 16;Oryzabase Gene Symbol Synonym(s)=OsPME16;Oryzabase Gene Name Synonym(s)=pectin methylesterase 16;Note=Similar to Pectin methylesterase-like protein.;Transcript_evidence=AK100257 (DDBJ%2C Best hit);ORF_evidence=A2XY44 (UniProt);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectinesterase inhibitor (IPR006501),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),Pectinesterase%2C active site (IPR018040);NIAS_FLcDNA=J023061N09;Oryzabase=13180;Expression=AK100257;TENOR=Os04t0641200-01;KEGG=Os04t0641200-01
Chr04	irgsp1_rep	five_prime_UTR	32625806	32625844	.	+	.	Parent=Os04t0641200-01
Chr04	irgsp1_rep	CDS	32625845	32628065	.	+	0	Parent=Os04t0641200-01
Chr04	irgsp1_rep	CDS	32628160	32628854	.	+	2	Parent=Os04t0641200-01
Chr04	irgsp1_rep	three_prime_UTR	32628855	32629133	.	+	.	Parent=Os04t0641200-01
Chr04	irgsp1_rep	mRNA	32627912	32628829	.	-	.	ID=Os04t0641250-00;Name=Os04t0641250-00;Locus_id=Os04g0641250;Note=Hypothetical protein.;Transcript_evidence=EU943103 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0641250-00
Chr04	irgsp1_rep	five_prime_UTR	32628828	32628829	.	-	.	Parent=Os04t0641250-00
Chr04	irgsp1_rep	CDS	32628126	32628827	.	-	0	Parent=Os04t0641250-00
Chr04	irgsp1_rep	three_prime_UTR	32627912	32628125	.	-	.	Parent=Os04t0641250-00
Chr04	irgsp1_rep	mRNA	32632279	32633954	.	+	.	ID=Os04t0641300-01;Name=Os04t0641300-01;Locus_id=Os04g0641300;Oryzabase Gene Symbol Synonym(s)=OsGRL9%2C GRL9;Oryzabase Gene Name Synonym(s)=GRX-like protein 9%2C glutaredoxin-like protein 9;Note=Thioredoxin fold domain containing protein.;Transcript_evidence=AK071780 (DDBJ%2C Best hit);ORF_evidence=Q9FSR1 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin (IPR002109),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=J023114E02;Oryzabase=13599;Expression=AK071780;TENOR=Os04t0641300-01;KEGG=Os04t0641300-01
Chr04	irgsp1_rep	five_prime_UTR	32632279	32632395	.	+	.	Parent=Os04t0641300-01
Chr04	irgsp1_rep	CDS	32632396	32633727	.	+	0	Parent=Os04t0641300-01
Chr04	irgsp1_rep	three_prime_UTR	32633728	32633954	.	+	.	Parent=Os04t0641300-01
Chr04	irgsp1_rep	mRNA	32632433	32633727	.	-	.	ID=Os04t0641350-00;Name=Os04t0641350-00;Locus_id=Os04g0641350;Note=Hypothetical protein.;Transcript_evidence=EU974948 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0641350-00
Chr04	irgsp1_rep	CDS	32633137	32633727	.	-	0	Parent=Os04t0641350-00
Chr04	irgsp1_rep	three_prime_UTR	32633061	32633136	.	-	.	Parent=Os04t0641350-00
Chr04	irgsp1_rep	three_prime_UTR	32632433	32632887	.	-	.	Parent=Os04t0641350-00
Chr04	irgsp1_rep	mRNA	32634773	32637824	.	-	.	ID=Os04t0641400-01;Name=Os04t0641400-01;Locus_id=Os04g0641400;Note=Similar to H0423H10.3 protein.;Transcript_evidence=AK062620 (DDBJ%2C Best hit);ORF_evidence=Q9FSR0 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Aldo/keto reductase (IPR001395),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-105-B07;TENOR=Os04t0641400-01
Chr04	irgsp1_rep	five_prime_UTR	32637779	32637824	.	-	.	Parent=Os04t0641400-01
Chr04	irgsp1_rep	CDS	32637717	32637778	.	-	0	Parent=Os04t0641400-01
Chr04	irgsp1_rep	CDS	32636318	32636437	.	-	1	Parent=Os04t0641400-01
Chr04	irgsp1_rep	CDS	32635903	32635978	.	-	1	Parent=Os04t0641400-01
Chr04	irgsp1_rep	CDS	32634984	32635097	.	-	0	Parent=Os04t0641400-01
Chr04	irgsp1_rep	CDS	32634773	32634833	.	-	0	Parent=Os04t0641400-01
Chr04	irgsp1_rep	mRNA	32634135	32637813	.	-	.	ID=Os04t0641400-02;Name=Os04t0641400-02;Locus_id=Os04g0641400;Note=Similar to H0423H10.3 protein.;Transcript_evidence=AK109401 (DDBJ%2C Best hit);ORF_evidence=Q9FSR0 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Aldo/keto reductase (IPR001395),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=006-301-G01;TENOR=Os04t0641400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	32637710	32637813	.	-	0	Parent=Os04t0641400-02
Chr04	irgsp1_rep	CDS	32636318	32636437	.	-	1	Parent=Os04t0641400-02
Chr04	irgsp1_rep	CDS	32635903	32635978	.	-	1	Parent=Os04t0641400-02
Chr04	irgsp1_rep	CDS	32634984	32635097	.	-	0	Parent=Os04t0641400-02
Chr04	irgsp1_rep	CDS	32634384	32634833	.	-	0	Parent=Os04t0641400-02
Chr04	irgsp1_rep	three_prime_UTR	32634135	32634383	.	-	.	Parent=Os04t0641400-02
Chr04	irgsp1_rep	mRNA	32634024	32635097	.	-	.	ID=Os04t0641400-03;Name=Os04t0641400-03;Locus_id=Os04g0641400;Note=Similar to H0423H10.3 protein.;Transcript_evidence=AK059892 (DDBJ%2C Best hit);ORF_evidence=Q9FSR0 (UniProt);NIAS_FLcDNA=006-208-D10;Expression=AK059892;TENOR=Os04t0641400-03;KEGG=Os04t0641400-03
Chr04	irgsp1_rep	CDS	32634984	32635097	.	-	0	Parent=Os04t0641400-03
Chr04	irgsp1_rep	CDS	32634384	32634833	.	-	0	Parent=Os04t0641400-03
Chr04	irgsp1_rep	three_prime_UTR	32634024	32634383	.	-	.	Parent=Os04t0641400-03
Chr04	irgsp1_rep	mRNA	32634186	32636438	.	+	.	ID=Os04t0641450-00;Name=Os04t0641450-00;Locus_id=Os04g0641450;Note=Hypothetical gene.;Transcript_evidence=BT016343 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0641450-00;KEGG=Os04t0641450-00
Chr04	irgsp1_rep	five_prime_UTR	32634186	32634398	.	+	.	Parent=Os04t0641450-00
Chr04	irgsp1_rep	CDS	32634399	32634617	.	+	0	Parent=Os04t0641450-00
Chr04	irgsp1_rep	three_prime_UTR	32634618	32634831	.	+	.	Parent=Os04t0641450-00
Chr04	irgsp1_rep	three_prime_UTR	32634979	32635099	.	+	.	Parent=Os04t0641450-00
Chr04	irgsp1_rep	three_prime_UTR	32635909	32635990	.	+	.	Parent=Os04t0641450-00
Chr04	irgsp1_rep	three_prime_UTR	32636326	32636438	.	+	.	Parent=Os04t0641450-00
Chr04	irgsp1_rep	mRNA	32657307	32658183	.	-	.	ID=Os04t0641700-00;Name=Os04t0641700-00;Locus_id=Os04g0641700;CGSNL Gene Symbol=ILI1;CGSNL Gene Name=INCREASED LEAF INCLINATION 1;Oryzabase Gene Symbol Synonym(s)=ILI1%2C OsbHLH154%2C OsILI1;Oryzabase Gene Name Synonym(s)=Increased Leaf Inclination1%2C INCREASED LEAF INCLINATION 1%2C basic helix-loop-helix protein 154;Note=Similar to H0423H10.4 protein.;Transcript_evidence=FP096598 (DDBJ);ORF_evidence=Q9FSQ9 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);Oryzabase=10945;TENOR=Os04t0641700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32658176	32658183	.	-	.	Parent=Os04t0641700-00
Chr04	irgsp1_rep	CDS	32658014	32658175	.	-	0	Parent=Os04t0641700-00
Chr04	irgsp1_rep	CDS	32657761	32657913	.	-	0	Parent=Os04t0641700-00
Chr04	irgsp1_rep	three_prime_UTR	32657307	32657760	.	-	.	Parent=Os04t0641700-00
Chr04	irgsp1_rep	mRNA	32671919	32678320	.	-	.	ID=Os04t0642000-01;Name=Os04t0642000-01;Locus_id=Os04g0642000;CGSNL Gene Symbol=MDR12;CGSNL Gene Name=MULTIDRUG RESISTANCE 12;Oryzabase Gene Symbol Synonym(s)=OsABCB16%2C ABCB16%2C OsPGP16%2C OsMDR12;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCB subgroup member 16%2C P-Glycoprotein 16%2C multidrug resistance 12;Note=Similar to MDR-like p-glycoprotein.;Transcript_evidence=AK069342 (DDBJ%2C Best hit);ORF_evidence=Q8GU76 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);NIAS_FLcDNA=J023013K12;Oryzabase=11935;Expression=AK069342;TENOR=Os04t0642000-01;KEGG=Os04t0642000-01
Chr04	irgsp1_rep	five_prime_UTR	32678008	32678320	.	-	.	Parent=Os04t0642000-01
Chr04	irgsp1_rep	CDS	32677708	32678007	.	-	0	Parent=Os04t0642000-01
Chr04	irgsp1_rep	CDS	32677510	32677564	.	-	0	Parent=Os04t0642000-01
Chr04	irgsp1_rep	CDS	32676703	32677079	.	-	2	Parent=Os04t0642000-01
Chr04	irgsp1_rep	CDS	32675475	32675734	.	-	0	Parent=Os04t0642000-01
Chr04	irgsp1_rep	CDS	32675040	32675356	.	-	1	Parent=Os04t0642000-01
Chr04	irgsp1_rep	CDS	32674734	32674957	.	-	2	Parent=Os04t0642000-01
Chr04	irgsp1_rep	CDS	32674358	32674656	.	-	0	Parent=Os04t0642000-01
Chr04	irgsp1_rep	CDS	32672310	32672316	.	-	1	Parent=Os04t0642000-01
Chr04	irgsp1_rep	three_prime_UTR	32671919	32672309	.	-	.	Parent=Os04t0642000-01
Chr04	irgsp1_rep	mRNA	32671919	32673747	.	-	.	ID=Os04t0642000-02;Name=Os04t0642000-02;Locus_id=Os04g0642000;CGSNL Gene Symbol=MDR12;CGSNL Gene Name=MULTIDRUG RESISTANCE 12;Oryzabase Gene Symbol Synonym(s)=OsABCB16%2C ABCB16%2C OsPGP16%2C OsMDR12;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCB subgroup member 16%2C P-Glycoprotein 16%2C multidrug resistance 12;Note=Similar to H0423H10.7 protein.;Transcript_evidence=AK105961 (DDBJ%2C Best hit);ORF_evidence=Q9FSQ6 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);NIAS_FLcDNA=001-205-E02;Oryzabase=11935;Expression=AK105961;TENOR=Os04t0642000-02;KEGG=Os04t0642000-02
Chr04	irgsp1_rep	CDS	32673505	32673747	.	-	0	Parent=Os04t0642000-02
Chr04	irgsp1_rep	CDS	32672137	32673342	.	-	0	Parent=Os04t0642000-02
Chr04	irgsp1_rep	three_prime_UTR	32671919	32672136	.	-	.	Parent=Os04t0642000-02
Chr04	irgsp1_rep	mRNA	32684561	32687566	.	+	.	ID=Os04t0642100-01;Name=Os04t0642100-01;Locus_id=Os04g0642100;Note=Microtubule-associated protein EB1.;Transcript_evidence=AK240692 (DDBJ%2C Best hit);ORF_evidence=Q9FSQ5 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: microtubule binding (GO:0008017);InterPro=Calponin homology domain (IPR001715),EB1%2C C-terminal (IPR004953);NIAS_FLcDNA=J043006P09;TENOR=Os04t0642100-01;KEGG=Os04t0642100-01
Chr04	irgsp1_rep	five_prime_UTR	32684561	32684677	.	+	.	Parent=Os04t0642100-01
Chr04	irgsp1_rep	CDS	32684678	32684800	.	+	0	Parent=Os04t0642100-01
Chr04	irgsp1_rep	CDS	32684986	32685054	.	+	0	Parent=Os04t0642100-01
Chr04	irgsp1_rep	CDS	32685163	32685249	.	+	0	Parent=Os04t0642100-01
Chr04	irgsp1_rep	CDS	32685959	32686065	.	+	0	Parent=Os04t0642100-01
Chr04	irgsp1_rep	CDS	32686160	32686281	.	+	1	Parent=Os04t0642100-01
Chr04	irgsp1_rep	CDS	32686556	32686629	.	+	2	Parent=Os04t0642100-01
Chr04	irgsp1_rep	CDS	32686927	32687040	.	+	0	Parent=Os04t0642100-01
Chr04	irgsp1_rep	CDS	32687194	32687307	.	+	0	Parent=Os04t0642100-01
Chr04	irgsp1_rep	three_prime_UTR	32687308	32687566	.	+	.	Parent=Os04t0642100-01
Chr04	irgsp1_rep	mRNA	32690044	32692537	.	-	.	ID=Os04t0642300-00;Name=Os04t0642300-00;Locus_id=Os04g0642300;Note=Similar to H0423H10.10 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q9FSQ3 (UniProt);TENOR=Os04t0642300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	32692078	32692537	.	-	0	Parent=Os04t0642300-00
Chr04	irgsp1_rep	CDS	32691056	32691217	.	-	2	Parent=Os04t0642300-00
Chr04	irgsp1_rep	CDS	32690759	32690802	.	-	2	Parent=Os04t0642300-00
Chr04	irgsp1_rep	CDS	32690621	32690652	.	-	0	Parent=Os04t0642300-00
Chr04	irgsp1_rep	CDS	32690044	32690215	.	-	1	Parent=Os04t0642300-00
Chr04	irgsp1_rep	mRNA	32726344	32730766	.	+	.	ID=Os04t0643000-01;Name=Os04t0643000-01;Locus_id=Os04g0643000;CGSNL Gene Symbol=CUL3B;CGSNL Gene Name=CULLIN 3B;Oryzabase Gene Symbol Synonym(s)=OsCUL3b%2C CUL3b;Oryzabase Gene Name Synonym(s)=Cullin3b%2C Cullin 3b;Note=Similar to Cullin-3 (CUL-3). Splice isoform 2.;Transcript_evidence=AK069061 (DDBJ%2C Best hit);ORF_evidence=Q25A70 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Cellular Component: cullin-RING ubiquitin ligase complex (GO:0031461),Molecular Function: ubiquitin protein ligase binding (GO:0031625);InterPro=Cullin%2C N-terminal (IPR001373),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Cullin homology (IPR016158),Cullin repeat-like-containing domain (IPR016159),Cullin protein%2C neddylation domain (IPR019559);NIAS_FLcDNA=J023008J21;Oryzabase=21710;Expression=AK069061;TENOR=Os04t0643000-01;KEGG=Os04t0643000-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32726344	32726518	.	+	.	Parent=Os04t0643000-01
Chr04	irgsp1_rep	CDS	32726519	32726679	.	+	0	Parent=Os04t0643000-01
Chr04	irgsp1_rep	CDS	32728522	32730556	.	+	1	Parent=Os04t0643000-01
Chr04	irgsp1_rep	three_prime_UTR	32730557	32730766	.	+	.	Parent=Os04t0643000-01
Chr04	irgsp1_rep	mRNA	32732642	32735542	.	+	.	ID=Os04t0643100-01;Name=Os04t0643100-01;Locus_id=Os04g0643100;Oryzabase Gene Name Synonym(s)=vacuolar H+-ATPase subunit D%2C Vacuolar ATP synthase subunit D;Note=Similar to Vacuolar ATP synthase subunit D (EC 3.6.3.14) (V-ATPase D subunit) (Vacuolar proton pump D subunit).;Transcript_evidence=AK067501 (DDBJ%2C Best hit);ORF_evidence=Q25A69 (UniProt);GO=Biological Process: ATP hydrolysis coupled proton transport (GO:0015991),Cellular Component: proton-transporting two-sector ATPase complex%2C catalytic domain (GO:0033178),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626),Molecular Function: proton-transporting ATPase activity%2C rotational mechanism (GO:0046961);InterPro=ATPase%2C V1/A1 complex%2C subunit D (IPR002699);NIAS_FLcDNA=J013110H12;Oryzabase=20521;Expression=AK067501;TENOR=Os04t0643100-01;KEGG=Os04t0643100-01 (EC:3.6.3.14)
Chr04	irgsp1_rep	five_prime_UTR	32732642	32732866	.	+	.	Parent=Os04t0643100-01
Chr04	irgsp1_rep	CDS	32732867	32733676	.	+	0	Parent=Os04t0643100-01
Chr04	irgsp1_rep	three_prime_UTR	32733677	32733705	.	+	.	Parent=Os04t0643100-01
Chr04	irgsp1_rep	three_prime_UTR	32735170	32735542	.	+	.	Parent=Os04t0643100-01
Chr04	irgsp1_rep	mRNA	32732806	32733949	.	+	.	ID=Os04t0643100-02;Name=Os04t0643100-02;Locus_id=Os04g0643100;Oryzabase Gene Name Synonym(s)=vacuolar H+-ATPase subunit D%2C Vacuolar ATP synthase subunit D;Note=Similar to Vacuolar ATP synthase subunit D (EC 3.6.3.14) (V-ATPase D subunit) (Vacuolar proton pump D subunit).;Transcript_evidence=AK106989 (DDBJ%2C Best hit);ORF_evidence=Q25A69 (UniProt);GO=Biological Process: ATP hydrolysis coupled proton transport (GO:0015991),Cellular Component: proton-transporting two-sector ATPase complex%2C catalytic domain (GO:0033178),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626),Molecular Function: proton-transporting ATPase activity%2C rotational mechanism (GO:0046961);InterPro=ATPase%2C V1/A1 complex%2C subunit D (IPR002699);NIAS_FLcDNA=002-120-A07;Oryzabase=20521;Expression=AK106989;TENOR=Os04t0643100-02;KEGG=Os04t0643100-02 (EC:3.6.3.14)
Chr04	irgsp1_rep	five_prime_UTR	32732806	32732866	.	+	.	Parent=Os04t0643100-02
Chr04	irgsp1_rep	CDS	32732867	32733676	.	+	0	Parent=Os04t0643100-02
Chr04	irgsp1_rep	three_prime_UTR	32733677	32733949	.	+	.	Parent=Os04t0643100-02
Chr04	irgsp1_rep	mRNA	32736613	32739871	.	-	.	ID=Os04t0643200-00;Name=Os04t0643200-00;Locus_id=Os04g0643200;Note=Amidase family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q25A68 (UniProt);GO=Molecular Function: carbon-nitrogen ligase activity%2C with glutamine as amido-N-donor (GO:0016884);InterPro=Amidase (IPR000120),Glutamyl-tRNA(Gln) amidotransferase A subunit (IPR004412),Amidase%2C conserved site (IPR020556),Amidase signature domain (IPR023631);TENOR=Os04t0643200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	32739212	32739871	.	-	0	Parent=Os04t0643200-00
Chr04	irgsp1_rep	CDS	32738581	32738892	.	-	0	Parent=Os04t0643200-00
Chr04	irgsp1_rep	CDS	32737838	32738017	.	-	0	Parent=Os04t0643200-00
Chr04	irgsp1_rep	CDS	32737647	32737741	.	-	0	Parent=Os04t0643200-00
Chr04	irgsp1_rep	CDS	32737487	32737562	.	-	1	Parent=Os04t0643200-00
Chr04	irgsp1_rep	CDS	32737234	32737311	.	-	0	Parent=Os04t0643200-00
Chr04	irgsp1_rep	CDS	32737030	32737123	.	-	0	Parent=Os04t0643200-00
Chr04	irgsp1_rep	CDS	32736899	32736948	.	-	2	Parent=Os04t0643200-00
Chr04	irgsp1_rep	CDS	32736613	32736672	.	-	0	Parent=Os04t0643200-00
Chr04	irgsp1_rep	mRNA	32741436	32746458	.	+	.	ID=Os04t0643300-01;Name=Os04t0643300-01;Locus_id=Os04g0643300;Note=Similar to 3-ketoacyl carrier protein synthase III.;Transcript_evidence=AK120067 (DDBJ%2C Best hit);ORF_evidence=Q25A72 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: metabolic process (GO:0008152),Biological Process: lipid biosynthetic process (GO:0008610),Molecular Function: catalytic activity (GO:0003824),Molecular Function: 3-oxoacyl-[acyl-carrier-protein] synthase activity (GO:0004315),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Beta-ketoacyl-acyl carrier protein synthase III (FabH) (IPR004655),3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (IPR013747),3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III (IPR013751),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);NIAS_FLcDNA=J013002L21;Expression=AK120067;TENOR=Os04t0643300-01;KEGG=Os04t0643300-01 (EC:2.3.1.180)
Chr04	irgsp1_rep	five_prime_UTR	32741436	32741671	.	+	.	Parent=Os04t0643300-01
Chr04	irgsp1_rep	CDS	32741672	32741886	.	+	0	Parent=Os04t0643300-01
Chr04	irgsp1_rep	CDS	32742736	32742884	.	+	1	Parent=Os04t0643300-01
Chr04	irgsp1_rep	CDS	32743446	32743582	.	+	2	Parent=Os04t0643300-01
Chr04	irgsp1_rep	CDS	32744848	32744950	.	+	0	Parent=Os04t0643300-01
Chr04	irgsp1_rep	CDS	32745051	32745169	.	+	2	Parent=Os04t0643300-01
Chr04	irgsp1_rep	CDS	32745372	32745436	.	+	0	Parent=Os04t0643300-01
Chr04	irgsp1_rep	CDS	32745516	32745732	.	+	1	Parent=Os04t0643300-01
Chr04	irgsp1_rep	CDS	32745803	32746024	.	+	0	Parent=Os04t0643300-01
Chr04	irgsp1_rep	three_prime_UTR	32746025	32746458	.	+	.	Parent=Os04t0643300-01
Chr04	irgsp1_rep	mRNA	32747011	32747087	.	-	.	ID=Os04t0643350-00;Name=Os04t0643350-00;Locus_id=Os04g0643350;Note=Non-protein coding transcript.;Transcript_evidence=X06283 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0643350-00
Chr04	irgsp1_rep	exon	32747011	32747087	.	-	.	Parent=Os04t0643350-00
Chr04	irgsp1_rep	mRNA	32747186	32748889	.	+	.	ID=Os04t0643401-00;Name=Os04t0643401-00;Locus_id=Os04g0643401;Note=Non-protein coding transcript.;Transcript_evidence=EU947745 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0643401-00
Chr04	irgsp1_rep	exon	32747186	32747419	.	+	.	Parent=Os04t0643401-00
Chr04	irgsp1_rep	exon	32748544	32748889	.	+	.	Parent=Os04t0643401-00
Chr04	irgsp1_rep	mRNA	32747192	32750831	.	-	.	ID=Os04t0643500-00;Name=Os04t0643500-00;Locus_id=Os04g0643500;Note=Similar to H0306F03.8 protein.;Transcript_evidence=AK365086 (DDBJ);ORF_evidence=Q25A67 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);TENOR=Os04t0643500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	32750437	32750831	.	-	0	Parent=Os04t0643500-00
Chr04	irgsp1_rep	CDS	32748561	32748882	.	-	1	Parent=Os04t0643500-00
Chr04	irgsp1_rep	CDS	32747192	32747455	.	-	0	Parent=Os04t0643500-00
Chr04	irgsp1_rep	mRNA	32754581	32758572	.	-	.	ID=Os04t0643550-00;Name=Os04t0643550-00;Locus_id=Os04g0643550;Note=Hypothetical protein.;Transcript_evidence=tplb0021e03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0643550-00
Chr04	irgsp1_rep	five_prime_UTR	32758540	32758572	.	-	.	Parent=Os04t0643550-00
Chr04	irgsp1_rep	CDS	32758078	32758539	.	-	0	Parent=Os04t0643550-00
Chr04	irgsp1_rep	three_prime_UTR	32757804	32758077	.	-	.	Parent=Os04t0643550-00
Chr04	irgsp1_rep	three_prime_UTR	32757482	32757720	.	-	.	Parent=Os04t0643550-00
Chr04	irgsp1_rep	three_prime_UTR	32757271	32757400	.	-	.	Parent=Os04t0643550-00
Chr04	irgsp1_rep	three_prime_UTR	32755963	32756250	.	-	.	Parent=Os04t0643550-00
Chr04	irgsp1_rep	three_prime_UTR	32755283	32755502	.	-	.	Parent=Os04t0643550-00
Chr04	irgsp1_rep	three_prime_UTR	32754581	32755141	.	-	.	Parent=Os04t0643550-00
Chr04	irgsp1_rep	mRNA	32757644	32758687	.	+	.	ID=Os04t0643600-01;Name=Os04t0643600-01;Locus_id=Os04g0643600;CGSNL Gene Symbol=CNGC8;CGSNL Gene Name=CYCLIC NUCLEOTIDE GATED CHANNEL 8;Oryzabase Gene Symbol Synonym(s)=OsCNGC8%2C OsCNGC6%2C OsCNGC9;Oryzabase Gene Name Synonym(s)=Cyclic nucleotide gated channel 8%2C Cyclic nucleotide-gated ion channel 6;Note=Similar to Cyclic nucleotide-gated channel C (Fragment).;Transcript_evidence=AK105170 (DDBJ%2C Best hit);ORF_evidence=Q25A66 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048),Cyclic nucleotide-binding domain (IPR000595),RmlC-like jelly roll fold (IPR014710),Cyclic nucleotide-binding-like (IPR018490);NIAS_FLcDNA=001-104-F07;Oryzabase=15481;Expression=AK105170;TENOR=Os04t0643600-01;KEGG=Os04t0643600-01
Chr04	irgsp1_rep	CDS	32757644	32757721	.	+	0	Parent=Os04t0643600-01
Chr04	irgsp1_rep	CDS	32757805	32758485	.	+	0	Parent=Os04t0643600-01
Chr04	irgsp1_rep	three_prime_UTR	32758486	32758687	.	+	.	Parent=Os04t0643600-01
Chr04	irgsp1_rep	mRNA	32758880	32760746	.	+	.	ID=Os04t0643700-01;Name=Os04t0643700-01;Locus_id=Os04g0643700;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK072261 (DDBJ%2C Best hit);ORF_evidence=Q25A65 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J023008O12;Expression=AK072261;TENOR=Os04t0643700-01;KEGG=Os04t0643700-01
Chr04	irgsp1_rep	five_prime_UTR	32758880	32758969	.	+	.	Parent=Os04t0643700-01
Chr04	irgsp1_rep	CDS	32758970	32760298	.	+	0	Parent=Os04t0643700-01
Chr04	irgsp1_rep	three_prime_UTR	32760299	32760484	.	+	.	Parent=Os04t0643700-01
Chr04	irgsp1_rep	three_prime_UTR	32760590	32760746	.	+	.	Parent=Os04t0643700-01
Chr04	irgsp1_rep	mRNA	32758915	32762453	.	+	.	ID=Os04t0643700-02;Name=Os04t0643700-02;Locus_id=Os04g0643700;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK101087 (DDBJ%2C Best hit);ORF_evidence=Q25A65 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J033024K07;Expression=AK101087;TENOR=Os04t0643700-02;KEGG=Os04t0643700-02
Chr04	irgsp1_rep	five_prime_UTR	32758915	32758969	.	+	.	Parent=Os04t0643700-02
Chr04	irgsp1_rep	CDS	32758970	32760298	.	+	0	Parent=Os04t0643700-02
Chr04	irgsp1_rep	three_prime_UTR	32760299	32760484	.	+	.	Parent=Os04t0643700-02
Chr04	irgsp1_rep	three_prime_UTR	32760590	32761325	.	+	.	Parent=Os04t0643700-02
Chr04	irgsp1_rep	three_prime_UTR	32762038	32762453	.	+	.	Parent=Os04t0643700-02
Chr04	irgsp1_rep	mRNA	32759309	32760801	.	+	.	ID=Os04t0643700-03;Name=Os04t0643700-03;Locus_id=Os04g0643700;Note=Similar to H0306F03.10 protein.;Transcript_evidence=AK108565 (DDBJ%2C Best hit);ORF_evidence=Q25A65 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=002-145-C09;Expression=AK108565;TENOR=Os04t0643700-03;KEGG=Os04t0643700-03
Chr04	irgsp1_rep	CDS	32759309	32760298	.	+	0	Parent=Os04t0643700-03
Chr04	irgsp1_rep	three_prime_UTR	32760299	32760484	.	+	.	Parent=Os04t0643700-03
Chr04	irgsp1_rep	three_prime_UTR	32760590	32760801	.	+	.	Parent=Os04t0643700-03
Chr04	irgsp1_rep	mRNA	32758965	32761178	.	-	.	ID=Os04t0643750-00;Name=Os04t0643750-00;Locus_id=Os04g0643750;Note=Hypothetical protein.;Transcript_evidence=tplb0043j02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0643750-00
Chr04	irgsp1_rep	five_prime_UTR	32759380	32761178	.	-	.	Parent=Os04t0643750-00
Chr04	irgsp1_rep	CDS	32759095	32759379	.	-	0	Parent=Os04t0643750-00
Chr04	irgsp1_rep	three_prime_UTR	32758965	32759094	.	-	.	Parent=Os04t0643750-00
Chr04	irgsp1_rep	mRNA	32764848	32765688	.	+	.	ID=Os04t0643800-00;Name=Os04t0643800-00;Locus_id=Os04g0643800;Note=Similar to H0306F03.11 protein.;Transcript_evidence=FP100404 (DDBJ);ORF_evidence=Q25A64 (UniProt);TENOR=Os04t0643800-00
Chr04	irgsp1_rep	five_prime_UTR	32764848	32764915	.	+	.	Parent=Os04t0643800-00
Chr04	irgsp1_rep	CDS	32764916	32764991	.	+	0	Parent=Os04t0643800-00
Chr04	irgsp1_rep	CDS	32765118	32765161	.	+	2	Parent=Os04t0643800-00
Chr04	irgsp1_rep	CDS	32765257	32765484	.	+	0	Parent=Os04t0643800-00
Chr04	irgsp1_rep	three_prime_UTR	32765485	32765688	.	+	.	Parent=Os04t0643800-00
Chr04	irgsp1_rep	mRNA	32769559	32772259	.	+	.	ID=Os04t0644000-01;Name=Os04t0644000-01;Locus_id=Os04g0644000;Note=Similar to H0306F03.12 protein.;Transcript_evidence=AK100283 (DDBJ%2C Best hit);ORF_evidence=Q25A63 (UniProt);NIAS_FLcDNA=J023074O21;Expression=AK100283;TENOR=Os04t0644000-01;KEGG=Os04t0644000-01
Chr04	irgsp1_rep	five_prime_UTR	32769559	32769754	.	+	.	Parent=Os04t0644000-01
Chr04	irgsp1_rep	CDS	32769755	32769887	.	+	0	Parent=Os04t0644000-01
Chr04	irgsp1_rep	CDS	32769982	32770184	.	+	2	Parent=Os04t0644000-01
Chr04	irgsp1_rep	CDS	32770293	32770474	.	+	0	Parent=Os04t0644000-01
Chr04	irgsp1_rep	CDS	32770605	32770889	.	+	1	Parent=Os04t0644000-01
Chr04	irgsp1_rep	CDS	32770992	32771050	.	+	1	Parent=Os04t0644000-01
Chr04	irgsp1_rep	CDS	32771143	32771179	.	+	2	Parent=Os04t0644000-01
Chr04	irgsp1_rep	CDS	32771277	32771348	.	+	1	Parent=Os04t0644000-01
Chr04	irgsp1_rep	CDS	32771427	32772096	.	+	1	Parent=Os04t0644000-01
Chr04	irgsp1_rep	three_prime_UTR	32772097	32772259	.	+	.	Parent=Os04t0644000-01
Chr04	irgsp1_rep	mRNA	32770091	32772069	.	-	.	ID=Os04t0644050-00;Name=Os04t0644050-00;Locus_id=Os04g0644050;Note=Hypothetical protein.;Transcript_evidence=tplb0048p04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0644050-00
Chr04	irgsp1_rep	five_prime_UTR	32771604	32772069	.	-	.	Parent=Os04t0644050-00
Chr04	irgsp1_rep	CDS	32771252	32771603	.	-	0	Parent=Os04t0644050-00
Chr04	irgsp1_rep	CDS	32770868	32770902	.	-	2	Parent=Os04t0644050-00
Chr04	irgsp1_rep	three_prime_UTR	32770622	32770867	.	-	.	Parent=Os04t0644050-00
Chr04	irgsp1_rep	three_prime_UTR	32770292	32770481	.	-	.	Parent=Os04t0644050-00
Chr04	irgsp1_rep	three_prime_UTR	32770091	32770183	.	-	.	Parent=Os04t0644050-00
Chr04	irgsp1_rep	mRNA	32773316	32774144	.	+	.	ID=Os04t0644100-01;Name=Os04t0644100-01;Locus_id=Os04g0644100;Note=Sterile alpha motif homology domain containing protein.;Transcript_evidence=AK106954 (DDBJ%2C Best hit);ORF_evidence=Q25A62 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Sterile alpha motif%2C type 2 (IPR011510),Sterile alpha motif/pointed domain (IPR013761);NIAS_FLcDNA=002-119-E07;Expression=AK106954;TENOR=Os04t0644100-01;KEGG=Os04t0644100-01
Chr04	irgsp1_rep	five_prime_UTR	32773316	32773398	.	+	.	Parent=Os04t0644100-01
Chr04	irgsp1_rep	CDS	32773399	32773965	.	+	0	Parent=Os04t0644100-01
Chr04	irgsp1_rep	three_prime_UTR	32773966	32774144	.	+	.	Parent=Os04t0644100-01
Chr04	irgsp1_rep	mRNA	32777808	32779467	.	-	.	ID=Os04t0644200-00;Name=Os04t0644200-00;Locus_id=Os04g0644200;Note=Similar to H0306F03.14 protein.;Transcript_evidence=AK367692 (DDBJ);ORF_evidence=Q25A61 (UniProt);TENOR=Os04t0644200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	32777824	32779467	.	-	0	Parent=Os04t0644200-00
Chr04	irgsp1_rep	three_prime_UTR	32777808	32777823	.	-	.	Parent=Os04t0644200-00
Chr04	irgsp1_rep	mRNA	32779825	32779885	.	+	.	ID=Os04t0644250-00;Name=Os04t0644250-00;Locus_id=Os04g0644250;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0644250-00
Chr04	irgsp1_rep	exon	32779825	32779885	.	+	.	Parent=Os04t0644250-00
Chr04	irgsp1_rep	mRNA	32791897	32792697	.	+	.	ID=Os04t0644300-01;Name=Os04t0644300-01;Locus_id=Os04g0644300;Note=Similar to H0413E07.5 protein.;Transcript_evidence=AK062549 (DDBJ%2C Best hit);ORF_evidence=Q25A77 (UniProt);NIAS_FLcDNA=001-104-G11;Expression=AK062549;TENOR=Os04t0644300-01;KEGG=Os04t0644300-01
Chr04	irgsp1_rep	five_prime_UTR	32791897	32791897	.	+	.	Parent=Os04t0644300-01
Chr04	irgsp1_rep	CDS	32791898	32791993	.	+	0	Parent=Os04t0644300-01
Chr04	irgsp1_rep	CDS	32792074	32792110	.	+	0	Parent=Os04t0644300-01
Chr04	irgsp1_rep	CDS	32792208	32792602	.	+	2	Parent=Os04t0644300-01
Chr04	irgsp1_rep	three_prime_UTR	32792603	32792697	.	+	.	Parent=Os04t0644300-01
Chr04	irgsp1_rep	mRNA	32792893	32794163	.	-	.	ID=Os04t0644400-01;Name=Os04t0644400-01;Locus_id=Os04g0644400;Note=Similar to Proline-rich-like protein.;Transcript_evidence=AK071989 (DDBJ%2C Best hit),AK061322 (DDBJ%2C Best hit),AK104623 (DDBJ%2C Best hit),AK105778 (DDBJ%2C Best hit),AK105903 (DDBJ%2C Best hit);ORF_evidence=Q25A76 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=J013094H13,006-302-F03,006-309-H11,001-202-F10,001-204-F11;Oryzabase=18483;Expression=AK071989;TENOR=Os04t0644400-01;KEGG=Os04t0644400-01
Chr04	irgsp1_rep	five_prime_UTR	32793776	32794163	.	-	.	Parent=Os04t0644400-01
Chr04	irgsp1_rep	CDS	32793227	32793775	.	-	0	Parent=Os04t0644400-01
Chr04	irgsp1_rep	three_prime_UTR	32792893	32793226	.	-	.	Parent=Os04t0644400-01
Chr04	irgsp1_rep	mRNA	32793300	32793575	.	+	.	ID=Os04t0644433-00;Name=Os04t0644433-00;Locus_id=Os04g0644433;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os04t0644433-00;KEGG=Os04t0644433-00
Chr04	irgsp1_rep	CDS	32793300	32793575	.	+	0	Parent=Os04t0644433-00
Chr04	irgsp1_rep	mRNA	32801074	32807528	.	-	.	ID=Os04t0644600-01;Name=Os04t0644600-01;Locus_id=Os04g0644600;Note=Epoxide hydrolase family protein.;Transcript_evidence=AK105846 (DDBJ%2C Best hit);ORF_evidence=Q25A86 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Alpha/beta hydrolase fold-1 (IPR000073),Epoxide hydrolase-like (IPR000639);NIAS_FLcDNA=001-203-G04;Expression=AK105846;TENOR=Os04t0644600-01;KEGG=Os04t0644600-01
Chr04	irgsp1_rep	five_prime_UTR	32807411	32807528	.	-	.	Parent=Os04t0644600-01
Chr04	irgsp1_rep	CDS	32807096	32807410	.	-	0	Parent=Os04t0644600-01
Chr04	irgsp1_rep	CDS	32806928	32807003	.	-	0	Parent=Os04t0644600-01
Chr04	irgsp1_rep	CDS	32806331	32806416	.	-	2	Parent=Os04t0644600-01
Chr04	irgsp1_rep	CDS	32805804	32805897	.	-	0	Parent=Os04t0644600-01
Chr04	irgsp1_rep	CDS	32805653	32805729	.	-	2	Parent=Os04t0644600-01
Chr04	irgsp1_rep	CDS	32805439	32805566	.	-	0	Parent=Os04t0644600-01
Chr04	irgsp1_rep	CDS	32804644	32804715	.	-	1	Parent=Os04t0644600-01
Chr04	irgsp1_rep	CDS	32804373	32804443	.	-	1	Parent=Os04t0644600-01
Chr04	irgsp1_rep	CDS	32803040	32803115	.	-	2	Parent=Os04t0644600-01
Chr04	irgsp1_rep	CDS	32802606	32802749	.	-	1	Parent=Os04t0644600-01
Chr04	irgsp1_rep	CDS	32802393	32802432	.	-	1	Parent=Os04t0644600-01
Chr04	irgsp1_rep	three_prime_UTR	32802264	32802392	.	-	.	Parent=Os04t0644600-01
Chr04	irgsp1_rep	three_prime_UTR	32801074	32801535	.	-	.	Parent=Os04t0644600-01
Chr04	irgsp1_rep	mRNA	32802078	32807528	.	-	.	ID=Os04t0644600-02;Name=Os04t0644600-02;Locus_id=Os04g0644600;Note=Epoxide hydrolase family protein.;Transcript_evidence=AK099966 (DDBJ%2C Best hit);ORF_evidence=Q25A86 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Alpha/beta hydrolase fold-1 (IPR000073),Epoxide hydrolase-like (IPR000639);NIAS_FLcDNA=J013127A03;Expression=AK099966;TENOR=Os04t0644600-02;KEGG=Os04t0644600-02
Chr04	irgsp1_rep	five_prime_UTR	32807411	32807528	.	-	.	Parent=Os04t0644600-02
Chr04	irgsp1_rep	CDS	32807096	32807410	.	-	0	Parent=Os04t0644600-02
Chr04	irgsp1_rep	CDS	32806928	32807003	.	-	0	Parent=Os04t0644600-02
Chr04	irgsp1_rep	CDS	32806331	32806416	.	-	2	Parent=Os04t0644600-02
Chr04	irgsp1_rep	CDS	32805804	32805897	.	-	0	Parent=Os04t0644600-02
Chr04	irgsp1_rep	CDS	32805653	32805729	.	-	2	Parent=Os04t0644600-02
Chr04	irgsp1_rep	CDS	32805439	32805566	.	-	0	Parent=Os04t0644600-02
Chr04	irgsp1_rep	CDS	32804644	32804715	.	-	1	Parent=Os04t0644600-02
Chr04	irgsp1_rep	CDS	32804373	32804443	.	-	1	Parent=Os04t0644600-02
Chr04	irgsp1_rep	CDS	32803040	32803115	.	-	2	Parent=Os04t0644600-02
Chr04	irgsp1_rep	CDS	32802606	32802749	.	-	1	Parent=Os04t0644600-02
Chr04	irgsp1_rep	CDS	32802393	32802432	.	-	1	Parent=Os04t0644600-02
Chr04	irgsp1_rep	three_prime_UTR	32802078	32802392	.	-	.	Parent=Os04t0644600-02
Chr04	irgsp1_rep	mRNA	32808151	32812224	.	-	.	ID=Os04t0644675-00;Name=Os04t0644675-00;Locus_id=Os04g0644675;Note=Similar to H0413E07.9 protein.;Transcript_evidence=AK356003 (DDBJ);ORF_evidence=Q25A85 (UniProt);InterPro=Spen paralogue and orthologue SPOC%2C C-terminal (IPR012921);TENOR=Os04t0644675-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	32811413	32812224	.	-	0	Parent=Os04t0644675-00
Chr04	irgsp1_rep	CDS	32810623	32810743	.	-	1	Parent=Os04t0644675-00
Chr04	irgsp1_rep	CDS	32810247	32810306	.	-	0	Parent=Os04t0644675-00
Chr04	irgsp1_rep	CDS	32809918	32810111	.	-	0	Parent=Os04t0644675-00
Chr04	irgsp1_rep	CDS	32809682	32809767	.	-	1	Parent=Os04t0644675-00
Chr04	irgsp1_rep	CDS	32808151	32808473	.	-	2	Parent=Os04t0644675-00
Chr04	irgsp1_rep	mRNA	32817477	32819752	.	+	.	ID=Os04t0644700-00;Name=Os04t0644700-00;Locus_id=Os04g0644700;Note=Coatomer%2C epsilon subunit domain containing protein.;Transcript_evidence=EU974142 (DDBJ);ORF_evidence=A2XY73 (UniProt);GO=Biological Process: retrograde vesicle-mediated transport%2C Golgi to ER (GO:0006890),Cellular Component: COPI vesicle coat (GO:0030126),Molecular Function: structural molecule activity (GO:0005198),Molecular Function: binding (GO:0005488);InterPro=Coatomer%2C epsilon subunit (IPR006822),Tetratricopeptide-like helical (IPR011990);TENOR=Os04t0644700-00;KEGG=Os04t0644700-00
Chr04	irgsp1_rep	five_prime_UTR	32817477	32817605	.	+	.	Parent=Os04t0644700-00
Chr04	irgsp1_rep	CDS	32817606	32817788	.	+	0	Parent=Os04t0644700-00
Chr04	irgsp1_rep	CDS	32818224	32818316	.	+	0	Parent=Os04t0644700-00
Chr04	irgsp1_rep	CDS	32818426	32818577	.	+	0	Parent=Os04t0644700-00
Chr04	irgsp1_rep	CDS	32818794	32818929	.	+	1	Parent=Os04t0644700-00
Chr04	irgsp1_rep	CDS	32819039	32819194	.	+	0	Parent=Os04t0644700-00
Chr04	irgsp1_rep	CDS	32819325	32819404	.	+	0	Parent=Os04t0644700-00
Chr04	irgsp1_rep	CDS	32819567	32819660	.	+	1	Parent=Os04t0644700-00
Chr04	irgsp1_rep	three_prime_UTR	32819661	32819752	.	+	.	Parent=Os04t0644700-00
Chr04	irgsp1_rep	mRNA	32820774	32824538	.	-	.	ID=Os04t0644750-00;Name=Os04t0644750-00;Locus_id=Os04g0644750;Note=Hypothetical protein.;Transcript_evidence=tplb0055l07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0644750-00
Chr04	irgsp1_rep	five_prime_UTR	32823436	32824538	.	-	.	Parent=Os04t0644750-00
Chr04	irgsp1_rep	five_prime_UTR	32822891	32823171	.	-	.	Parent=Os04t0644750-00
Chr04	irgsp1_rep	five_prime_UTR	32822561	32822742	.	-	.	Parent=Os04t0644750-00
Chr04	irgsp1_rep	CDS	32822467	32822560	.	-	0	Parent=Os04t0644750-00
Chr04	irgsp1_rep	CDS	32821410	32821527	.	-	2	Parent=Os04t0644750-00
Chr04	irgsp1_rep	CDS	32821225	32821282	.	-	1	Parent=Os04t0644750-00
Chr04	irgsp1_rep	three_prime_UTR	32821053	32821224	.	-	.	Parent=Os04t0644750-00
Chr04	irgsp1_rep	three_prime_UTR	32820774	32820937	.	-	.	Parent=Os04t0644750-00
Chr04	irgsp1_rep	mRNA	32824363	32825367	.	+	.	ID=Os04t0644800-01;Name=Os04t0644800-01;Locus_id=Os04g0644800;CGSNL Gene Symbol=CBSCLC5;CGSNL Gene Name=CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 5;Oryzabase Gene Symbol Synonym(s)=OsCBSCLC5;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSCLC5%2C CBS domain containing protein OsCBSCLC5%2C CBS domain containing protein 5;Note=Similar to Chloride channel-like protein Osclc.;Transcript_evidence=AK318566 (DDBJ%2C Best hit);ORF_evidence=Q2VBU9 (UniProt);GO=Biological Process: chloride transport (GO:0006821),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: voltage-gated chloride channel activity (GO:0005247),Molecular Function: protein binding (GO:0005515);InterPro=Cystathionine beta-synthase%2C core (IPR000644),Chloride channel%2C voltage gated (IPR001807);NIAS_FLcDNA=J080039K07;Oryzabase=10334;TENOR=Os04t0644800-01;KEGG=Os04t0644800-01
Chr04	irgsp1_rep	CDS	32824363	32824548	.	+	0	Parent=Os04t0644800-01
Chr04	irgsp1_rep	CDS	32824948	32825085	.	+	0	Parent=Os04t0644800-01
Chr04	irgsp1_rep	three_prime_UTR	32825086	32825367	.	+	.	Parent=Os04t0644800-01
Chr04	irgsp1_rep	mRNA	32830756	32831401	.	+	.	ID=Os04t0644900-01;Name=Os04t0644900-01;Locus_id=Os04g0644900;CGSNL Gene Symbol=NTMC2T2.1;CGSNL Gene Name=N-TERMINAL-TM-C2 DOMAIN PROTEIN 2.1;Oryzabase Gene Symbol Synonym(s)=OsNTMC2T2.1;Oryzabase Gene Name Synonym(s)=N-terminal-TM-C2 domain protein 2.1%2C N-terminal trans- membrane and C2 domain protein 2.1%2C NTMC2 type 2.1 protein%2C NTMC2 family gene 2.1;Note=C2 domain containing protein.;Transcript_evidence=AK062763 (DDBJ%2C Best hit);ORF_evidence=Q25A82 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973);NIAS_FLcDNA=001-106-H03;Oryzabase=22124;Expression=AK062763;TENOR=Os04t0644900-01;KEGG=Os04t0644900-01
Chr04	irgsp1_rep	five_prime_UTR	32830756	32830756	.	+	.	Parent=Os04t0644900-01
Chr04	irgsp1_rep	CDS	32830757	32830843	.	+	0	Parent=Os04t0644900-01
Chr04	irgsp1_rep	CDS	32830949	32831122	.	+	0	Parent=Os04t0644900-01
Chr04	irgsp1_rep	three_prime_UTR	32831123	32831401	.	+	.	Parent=Os04t0644900-01
Chr04	irgsp1_rep	mRNA	32831740	32831940	.	-	.	ID=Os04t0644950-00;Name=Os04t0644950-00;Locus_id=Os04g0644950;Note=Conserved hypothetical protein.;Transcript_evidence=FP095444 (DDBJ);ORF_evidence=NP_001048190.1 (RefSeq);TENOR=Os04t0644950-00
Chr04	irgsp1_rep	five_prime_UTR	32831903	32831940	.	-	.	Parent=Os04t0644950-00
Chr04	irgsp1_rep	CDS	32831858	32831902	.	-	0	Parent=Os04t0644950-00
Chr04	irgsp1_rep	three_prime_UTR	32831740	32831857	.	-	.	Parent=Os04t0644950-00
Chr04	irgsp1_rep	mRNA	32832149	32832391	.	-	.	ID=Os04t0645001-00;Name=Os04t0645001-00;Locus_id=Os04g0645001;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os04t0645001-00;KEGG=Os04t0645001-00
Chr04	irgsp1_rep	CDS	32832149	32832391	.	-	0	Parent=Os04t0645001-00
Chr04	irgsp1_rep	mRNA	32835280	32848285	.	+	.	ID=Os04t0645100-01;Name=Os04t0645100-01;Locus_id=Os04g0645100;RAP-DB Gene Symbol Synonym(s)=FLO2%2C flo2%2C flo3(t);RAP-DB Gene Name Synonym(s)=FLOURY ENDOSPERM 2%2C floury endosperm2%2C floury endosperm 2%2C floury endosperm-2%2C Floury 2;CGSNL Gene Symbol=FLO2;CGSNL Gene Name=FLOURY ENDOSPERM 2;Oryzabase Gene Symbol Synonym(s)=flo2%2C flo3(t)%2C Osflo2%2C Osflo3(t)%2C Osflo-2%2C flo-2;Oryzabase Gene Name Synonym(s)=floury endosperm2%2C floury endosperm 2%2C floury endosperm-2%2C Floury 2;Note=Tetratricopeptide repeat (TPR) domain containing protein%2C Grain size and starch quality;Transcript_evidence=AL606445,CAE03171;ORF_evidence=Q7XQE6 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing domain (IPR013026),Tetratricopeptide repeat (IPR019734),GSKIP/TIF31 domain (IPR023231);NIAS_FLcDNA=J013122D02,J023091D11;Manual Curation=November 9%2C 2010;Literature_PMID=20889913;Oryzabase=629;Expression=AK100454;TENOR=Os04t0645100-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32835280	32835313	.	+	.	Parent=Os04t0645100-01
Chr04	irgsp1_rep	CDS	32835314	32835398	.	+	0	Parent=Os04t0645100-01
Chr04	irgsp1_rep	CDS	32836039	32836100	.	+	2	Parent=Os04t0645100-01
Chr04	irgsp1_rep	CDS	32836393	32836485	.	+	0	Parent=Os04t0645100-01
Chr04	irgsp1_rep	CDS	32836781	32836853	.	+	0	Parent=Os04t0645100-01
Chr04	irgsp1_rep	CDS	32839678	32839983	.	+	2	Parent=Os04t0645100-01
Chr04	irgsp1_rep	CDS	32840069	32840127	.	+	2	Parent=Os04t0645100-01
Chr04	irgsp1_rep	CDS	32840240	32840371	.	+	0	Parent=Os04t0645100-01
Chr04	irgsp1_rep	CDS	32840506	32840547	.	+	0	Parent=Os04t0645100-01
Chr04	irgsp1_rep	CDS	32840652	32841185	.	+	0	Parent=Os04t0645100-01
Chr04	irgsp1_rep	CDS	32841281	32841471	.	+	0	Parent=Os04t0645100-01
Chr04	irgsp1_rep	CDS	32841630	32842119	.	+	1	Parent=Os04t0645100-01
Chr04	irgsp1_rep	CDS	32842365	32842427	.	+	0	Parent=Os04t0645100-01
Chr04	irgsp1_rep	CDS	32842796	32842897	.	+	0	Parent=Os04t0645100-01
Chr04	irgsp1_rep	CDS	32842987	32843307	.	+	0	Parent=Os04t0645100-01
Chr04	irgsp1_rep	CDS	32843386	32843478	.	+	0	Parent=Os04t0645100-01
Chr04	irgsp1_rep	CDS	32843576	32843677	.	+	0	Parent=Os04t0645100-01
Chr04	irgsp1_rep	CDS	32843810	32843914	.	+	0	Parent=Os04t0645100-01
Chr04	irgsp1_rep	CDS	32844025	32844158	.	+	0	Parent=Os04t0645100-01
Chr04	irgsp1_rep	CDS	32844521	32844704	.	+	1	Parent=Os04t0645100-01
Chr04	irgsp1_rep	CDS	32845318	32845449	.	+	0	Parent=Os04t0645100-01
Chr04	irgsp1_rep	CDS	32845539	32845651	.	+	0	Parent=Os04t0645100-01
Chr04	irgsp1_rep	CDS	32845720	32845801	.	+	1	Parent=Os04t0645100-01
Chr04	irgsp1_rep	CDS	32846420	32848084	.	+	0	Parent=Os04t0645100-01
Chr04	irgsp1_rep	three_prime_UTR	32848085	32848285	.	+	.	Parent=Os04t0645100-01
Chr04	irgsp1_rep	mRNA	32843625	32848285	.	+	.	ID=Os04t0645100-02;Name=Os04t0645100-02;Locus_id=Os04g0645100;CGSNL Gene Symbol=FLO2;CGSNL Gene Name=FLOURY ENDOSPERM 2;Oryzabase Gene Symbol Synonym(s)=flo2%2C flo3(t)%2C Osflo2%2C Osflo3(t)%2C Osflo-2%2C flo-2;Oryzabase Gene Name Synonym(s)=floury endosperm2%2C floury endosperm 2%2C floury endosperm-2%2C Floury 2;Note=Similar to H0811D08.1 protein.;Transcript_evidence=AK100454 (DDBJ%2C Best hit);ORF_evidence=Q25AP6 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J023091D11;Oryzabase=629;Expression=AK100454;TENOR=Os04t0645100-02;KEGG=Os04t0645100-02
Chr04	irgsp1_rep	five_prime_UTR	32843625	32843626	.	+	.	Parent=Os04t0645100-02
Chr04	irgsp1_rep	CDS	32843627	32843677	.	+	0	Parent=Os04t0645100-02
Chr04	irgsp1_rep	CDS	32843810	32843914	.	+	0	Parent=Os04t0645100-02
Chr04	irgsp1_rep	CDS	32844025	32844158	.	+	0	Parent=Os04t0645100-02
Chr04	irgsp1_rep	CDS	32844521	32844704	.	+	1	Parent=Os04t0645100-02
Chr04	irgsp1_rep	CDS	32845318	32845449	.	+	0	Parent=Os04t0645100-02
Chr04	irgsp1_rep	CDS	32845539	32845651	.	+	0	Parent=Os04t0645100-02
Chr04	irgsp1_rep	CDS	32845720	32845801	.	+	1	Parent=Os04t0645100-02
Chr04	irgsp1_rep	CDS	32846420	32848084	.	+	0	Parent=Os04t0645100-02
Chr04	irgsp1_rep	three_prime_UTR	32848085	32848285	.	+	.	Parent=Os04t0645100-02
Chr04	irgsp1_rep	mRNA	32852142	32853025	.	-	.	ID=Os04t0645200-01;Name=Os04t0645200-01;Locus_id=Os04g0645200;Oryzabase Gene Symbol Synonym(s)=OsVQ16;Oryzabase Gene Name Synonym(s)=VQ motif-containing protein 16;Note=VQ domain containing protein.;Transcript_evidence=AK067139 (DDBJ%2C Best hit);ORF_evidence=NP_001151659.1 (RefSeq);InterPro=VQ (IPR008889);NIAS_FLcDNA=J013096O17;Oryzabase=13632;Expression=AK067139;TENOR=Os04t0645200-01;KEGG=Os04t0645200-01
Chr04	irgsp1_rep	five_prime_UTR	32852881	32853025	.	-	.	Parent=Os04t0645200-01
Chr04	irgsp1_rep	CDS	32852272	32852880	.	-	0	Parent=Os04t0645200-01
Chr04	irgsp1_rep	three_prime_UTR	32852142	32852271	.	-	.	Parent=Os04t0645200-01
Chr04	irgsp1_rep	mRNA	32855657	32856649	.	+	.	ID=Os04t0645500-01;Name=Os04t0645500-01;Locus_id=Os04g0645500;Note=Nicotinamide N-methyltransferase%2C putative domain containing protein.;Transcript_evidence=AK062761 (DDBJ%2C Best hit);ORF_evidence=A2XY79 (UniProt);InterPro=Nicotinamide N-methyltransferase%2C putative (IPR019410);NIAS_FLcDNA=001-106-H01;Expression=AK062761;TENOR=Os04t0645500-01;KEGG=Os04t0645500-01
Chr04	irgsp1_rep	five_prime_UTR	32855657	32855687	.	+	.	Parent=Os04t0645500-01
Chr04	irgsp1_rep	CDS	32855688	32856434	.	+	0	Parent=Os04t0645500-01
Chr04	irgsp1_rep	three_prime_UTR	32856435	32856649	.	+	.	Parent=Os04t0645500-01
Chr04	irgsp1_rep	mRNA	32856597	32860277	.	-	.	ID=Os04t0645600-01;Name=Os04t0645600-01;Locus_id=Os04g0645600;Note=Protein of unknown function DUF6%2C transmembrane domain containing protein.;Transcript_evidence=AK100006 (DDBJ%2C Best hit);ORF_evidence=Q25AP5 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=J013135P10;Expression=AK100006;TENOR=Os04t0645600-01;KEGG=Os04t0645600-01
Chr04	irgsp1_rep	five_prime_UTR	32860000	32860277	.	-	.	Parent=Os04t0645600-01
Chr04	irgsp1_rep	CDS	32859913	32859999	.	-	0	Parent=Os04t0645600-01
Chr04	irgsp1_rep	CDS	32858744	32859139	.	-	0	Parent=Os04t0645600-01
Chr04	irgsp1_rep	CDS	32858406	32858623	.	-	0	Parent=Os04t0645600-01
Chr04	irgsp1_rep	CDS	32858021	32858091	.	-	1	Parent=Os04t0645600-01
Chr04	irgsp1_rep	CDS	32857851	32857952	.	-	2	Parent=Os04t0645600-01
Chr04	irgsp1_rep	CDS	32857376	32857493	.	-	2	Parent=Os04t0645600-01
Chr04	irgsp1_rep	CDS	32857162	32857297	.	-	1	Parent=Os04t0645600-01
Chr04	irgsp1_rep	CDS	32856866	32856928	.	-	0	Parent=Os04t0645600-01
Chr04	irgsp1_rep	three_prime_UTR	32856597	32856865	.	-	.	Parent=Os04t0645600-01
Chr04	irgsp1_rep	mRNA	32861836	32864018	.	-	.	ID=Os04t0645700-01;Name=Os04t0645700-01;Locus_id=Os04g0645700;Note=Similar to H0811D08.5 protein.;Transcript_evidence=AK100707 (DDBJ%2C Best hit);ORF_evidence=Q25AP4 (UniProt);NIAS_FLcDNA=J023115C23;Expression=AK100707;TENOR=Os04t0645700-01;KEGG=Os04t0645700-01
Chr04	irgsp1_rep	five_prime_UTR	32863648	32864018	.	-	.	Parent=Os04t0645700-01
Chr04	irgsp1_rep	five_prime_UTR	32862510	32862535	.	-	.	Parent=Os04t0645700-01
Chr04	irgsp1_rep	CDS	32862201	32862509	.	-	0	Parent=Os04t0645700-01
Chr04	irgsp1_rep	three_prime_UTR	32861836	32862200	.	-	.	Parent=Os04t0645700-01
Chr04	irgsp1_rep	mRNA	32864978	32867316	.	+	.	ID=Os04t0645901-00;Name=Os04t0645901-00;Locus_id=Os04g0645901;Note=Hypothetical protein.;Transcript_evidence=tplb0041a03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0645901-00
Chr04	irgsp1_rep	five_prime_UTR	32864978	32865146	.	+	.	Parent=Os04t0645901-00
Chr04	irgsp1_rep	five_prime_UTR	32865291	32865694	.	+	.	Parent=Os04t0645901-00
Chr04	irgsp1_rep	five_prime_UTR	32865987	32866554	.	+	.	Parent=Os04t0645901-00
Chr04	irgsp1_rep	five_prime_UTR	32866632	32866663	.	+	.	Parent=Os04t0645901-00
Chr04	irgsp1_rep	CDS	32866664	32867002	.	+	0	Parent=Os04t0645901-00
Chr04	irgsp1_rep	three_prime_UTR	32867003	32867126	.	+	.	Parent=Os04t0645901-00
Chr04	irgsp1_rep	three_prime_UTR	32867231	32867316	.	+	.	Parent=Os04t0645901-00
Chr04	irgsp1_rep	mRNA	32865045	32866492	.	-	.	ID=Os04t0646000-00;Name=Os04t0646000-00;Locus_id=Os04g0646000;Note=Similar to H0811D08.6 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q25AP3 (UniProt);TENOR=Os04t0646000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	32866325	32866492	.	-	0	Parent=Os04t0646000-00
Chr04	irgsp1_rep	CDS	32865077	32865928	.	-	0	Parent=Os04t0646000-00
Chr04	irgsp1_rep	CDS	32865045	32865059	.	-	0	Parent=Os04t0646000-00
Chr04	irgsp1_rep	mRNA	32866736	32867326	.	-	.	ID=Os04t0646050-00;Name=Os04t0646050-00;Locus_id=Os04g0646050;Note=Similar to H0811D08.6 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q25AP3 (UniProt);TENOR=Os04t0646050-00
Chr04	irgsp1_rep	CDS	32867219	32867326	.	-	0	Parent=Os04t0646050-00
Chr04	irgsp1_rep	CDS	32866736	32867116	.	-	0	Parent=Os04t0646050-00
Chr04	irgsp1_rep	mRNA	32868115	32869546	.	-	.	ID=Os04t0646100-01;Name=Os04t0646100-01;Locus_id=Os04g0646100;Note=Similar to cDNA clone:J013093N15%2C full insert sequence.;Transcript_evidence=AK242430 (DDBJ%2C Best hit);ORF_evidence=B7ECV3 (UniProt);GO=Cellular Component: nucleus (GO:0005634);InterPro=G10 protein (IPR001748),BUD31/G10-related%2C conserved site (IPR018230);NIAS_FLcDNA=J080091L18;TENOR=Os04t0646100-01;KEGG=Os04t0646100-01
Chr04	irgsp1_rep	five_prime_UTR	32869545	32869546	.	-	.	Parent=Os04t0646100-01
Chr04	irgsp1_rep	CDS	32869452	32869544	.	-	0	Parent=Os04t0646100-01
Chr04	irgsp1_rep	CDS	32868369	32868524	.	-	0	Parent=Os04t0646100-01
Chr04	irgsp1_rep	three_prime_UTR	32868115	32868368	.	-	.	Parent=Os04t0646100-01
Chr04	irgsp1_rep	mRNA	32933242	32937209	.	-	.	ID=Os04t0647300-01;Name=Os04t0647300-01;Locus_id=Os04g0647300;CGSNL Gene Symbol=UBP9-1;CGSNL Gene Name=UBIQUITIN-SPECIFIC PROCESSING PROTEASE 9-1;Oryzabase Gene Symbol Synonym(s)=OsUBP9-1%2C OsUBP22%2C UBP22;Oryzabase Gene Name Synonym(s)=ubiquitin-specific processing protease 9-1%2C Ubiquitin-specific protease 22;Note=Similar to H0811D08.10 protein.;Transcript_evidence=AK100969 (DDBJ%2C Best hit);ORF_evidence=Q25AN5 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Molecular Function: ubiquitin thiolesterase activity (GO:0004221);InterPro=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (IPR001394),Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2%2C conserved site (IPR018200);NIAS_FLcDNA=J023143B02;Oryzabase=22892;TENOR=Os04t0647300-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32937209	32937209	.	-	.	Parent=Os04t0647300-01
Chr04	irgsp1_rep	CDS	32936322	32937208	.	-	0	Parent=Os04t0647300-01
Chr04	irgsp1_rep	CDS	32935188	32935312	.	-	1	Parent=Os04t0647300-01
Chr04	irgsp1_rep	CDS	32933695	32934458	.	-	2	Parent=Os04t0647300-01
Chr04	irgsp1_rep	three_prime_UTR	32933242	32933694	.	-	.	Parent=Os04t0647300-01
Chr04	irgsp1_rep	mRNA	32940770	32941886	.	-	.	ID=Os04t0647425-00;Name=Os04t0647425-00;Locus_id=Os04g0647425;Note=Protein of unknown function DUF247%2C plant domain containing protein.;Transcript_evidence=AK335379 (DDBJ);ORF_evidence=B9FCU1 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);TENOR=Os04t0647425-00
Chr04	irgsp1_rep	CDS	32940861	32941886	.	-	0	Parent=Os04t0647425-00
Chr04	irgsp1_rep	three_prime_UTR	32940770	32940860	.	-	.	Parent=Os04t0647425-00
Chr04	irgsp1_rep	mRNA	32956000	32959941	.	-	.	ID=Os04t0647800-01;Name=Os04t0647800-01;Locus_id=Os04g0647800;Note=Similar to Glycerol kinase-like protein.;Transcript_evidence=AK069876 (DDBJ%2C Best hit);ORF_evidence=Q0ILB9 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: glycerol-3-phosphate metabolic process (GO:0006072),Molecular Function: glycerol kinase activity (GO:0004370),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Carbohydrate kinase%2C FGGY (IPR000577),Glycerol kinase (IPR005999),Carbohydrate kinase%2C FGGY%2C conserved site (IPR018483),Carbohydrate kinase%2C FGGY%2C N-terminal (IPR018484),Carbohydrate kinase%2C FGGY%2C C-terminal (IPR018485);NIAS_FLcDNA=J023036K08;TENOR=Os04t0647800-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32959648	32959941	.	-	.	Parent=Os04t0647800-01
Chr04	irgsp1_rep	CDS	32959517	32959647	.	-	0	Parent=Os04t0647800-01
Chr04	irgsp1_rep	CDS	32958123	32958344	.	-	1	Parent=Os04t0647800-01
Chr04	irgsp1_rep	CDS	32957054	32958047	.	-	1	Parent=Os04t0647800-01
Chr04	irgsp1_rep	CDS	32956106	32956348	.	-	0	Parent=Os04t0647800-01
Chr04	irgsp1_rep	three_prime_UTR	32956000	32956105	.	-	.	Parent=Os04t0647800-01
Chr04	irgsp1_rep	mRNA	32956009	32959803	.	-	.	ID=Os04t0647800-02;Name=Os04t0647800-02;Locus_id=Os04g0647800;Note=Similar to Glycerol kinase-like protein.;Transcript_evidence=AK104069 (DDBJ%2C Best hit),AK065350 (DDBJ%2C Best hit);ORF_evidence=Q0ILB9 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: glycerol-3-phosphate metabolic process (GO:0006072),Molecular Function: glycerol kinase activity (GO:0004370),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Carbohydrate kinase%2C FGGY (IPR000577),Glycerol kinase (IPR005999),Carbohydrate kinase%2C FGGY%2C conserved site (IPR018483),Carbohydrate kinase%2C FGGY%2C N-terminal (IPR018484),Carbohydrate kinase%2C FGGY%2C C-terminal (IPR018485);NIAS_FLcDNA=001-026-G05,J013012O13;TENOR=Os04t0647800-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32959648	32959803	.	-	.	Parent=Os04t0647800-02
Chr04	irgsp1_rep	CDS	32959517	32959647	.	-	0	Parent=Os04t0647800-02
Chr04	irgsp1_rep	CDS	32958123	32958344	.	-	1	Parent=Os04t0647800-02
Chr04	irgsp1_rep	CDS	32957054	32958047	.	-	1	Parent=Os04t0647800-02
Chr04	irgsp1_rep	CDS	32956106	32956348	.	-	0	Parent=Os04t0647800-02
Chr04	irgsp1_rep	three_prime_UTR	32956009	32956105	.	-	.	Parent=Os04t0647800-02
Chr04	irgsp1_rep	mRNA	32963581	32967002	.	+	.	ID=Os04t0647900-01;Name=Os04t0647900-01;Locus_id=Os04g0647900;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=AK068809 (DDBJ%2C Best hit);ORF_evidence=A5LGG3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J013160F13;Expression=AK068809;TENOR=Os04t0647900-01;KEGG=Os04t0647900-01
Chr04	irgsp1_rep	five_prime_UTR	32963581	32963619	.	+	.	Parent=Os04t0647900-01
Chr04	irgsp1_rep	CDS	32963620	32964034	.	+	0	Parent=Os04t0647900-01
Chr04	irgsp1_rep	CDS	32964118	32964270	.	+	2	Parent=Os04t0647900-01
Chr04	irgsp1_rep	CDS	32964390	32964605	.	+	2	Parent=Os04t0647900-01
Chr04	irgsp1_rep	CDS	32964704	32966799	.	+	2	Parent=Os04t0647900-01
Chr04	irgsp1_rep	three_prime_UTR	32966800	32967002	.	+	.	Parent=Os04t0647900-01
Chr04	irgsp1_rep	mRNA	32963688	32967606	.	-	.	ID=Os04t0648000-01;Name=Os04t0648000-01;Locus_id=Os04g0648000;Note=Non-protein coding transcript.;Transcript_evidence=AK061272 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=006-212-E02;TENOR=Os04t0648000-01
Chr04	irgsp1_rep	exon	32967343	32967606	.	-	.	Parent=Os04t0648000-01
Chr04	irgsp1_rep	exon	32963688	32964264	.	-	.	Parent=Os04t0648000-01
Chr04	irgsp1_rep	mRNA	32976317	32977691	.	+	.	ID=Os04t0648200-01;Name=Os04t0648200-01;Locus_id=Os04g0648200;Note=Leucine-rich repeat%2C plant specific containing protein.;Transcript_evidence=AK110734 (DDBJ%2C Best hit);ORF_evidence=Q7XTW2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=002-170-F01;Expression=AK110734;TENOR=Os04t0648200-01;KEGG=Os04t0648200-01
Chr04	irgsp1_rep	CDS	32976317	32977648	.	+	0	Parent=Os04t0648200-01
Chr04	irgsp1_rep	three_prime_UTR	32977649	32977691	.	+	.	Parent=Os04t0648200-01
Chr04	irgsp1_rep	mRNA	32991267	32994650	.	+	.	ID=Os04t0648400-00;Name=Os04t0648400-00;Locus_id=Os04g0648400;Note=Similar to H0811D08.17 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q25A08 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);TENOR=Os04t0648400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	32991267	32991525	.	+	0	Parent=Os04t0648400-00
Chr04	irgsp1_rep	CDS	32991939	32992157	.	+	2	Parent=Os04t0648400-00
Chr04	irgsp1_rep	CDS	32992248	32992487	.	+	2	Parent=Os04t0648400-00
Chr04	irgsp1_rep	CDS	32992586	32993710	.	+	2	Parent=Os04t0648400-00
Chr04	irgsp1_rep	CDS	32993890	32994650	.	+	2	Parent=Os04t0648400-00
Chr04	irgsp1_rep	mRNA	32994714	32999780	.	-	.	ID=Os04t0648500-01;Name=Os04t0648500-01;Locus_id=Os04g0648500;CGSNL Gene Symbol=DLN122;CGSNL Gene Name=DLN REPRESSOR 122;Oryzabase Gene Symbol Synonym(s)=OsDLN122;Oryzabase Gene Name Synonym(s)=DLN repressor 122%2C DLN motif protein 122;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK071891 (DDBJ%2C Best hit),AK064227 (DDBJ%2C Best hit);ORF_evidence=Q25A03 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C UBP-type (IPR001607),Zinc finger%2C RING-type (IPR001841),BRCA1-associated 2 (IPR011422),Nucleotide-binding%2C alpha-beta plait (IPR012677),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J013057F24,002-104-G10;Oryzabase=23194;TENOR=Os04t0648500-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	32999753	32999780	.	-	.	Parent=Os04t0648500-01
Chr04	irgsp1_rep	CDS	32999393	32999752	.	-	0	Parent=Os04t0648500-01
Chr04	irgsp1_rep	CDS	32999193	32999308	.	-	0	Parent=Os04t0648500-01
Chr04	irgsp1_rep	CDS	32999002	32999110	.	-	1	Parent=Os04t0648500-01
Chr04	irgsp1_rep	CDS	32998787	32998901	.	-	0	Parent=Os04t0648500-01
Chr04	irgsp1_rep	CDS	32997835	32997932	.	-	2	Parent=Os04t0648500-01
Chr04	irgsp1_rep	CDS	32996445	32996551	.	-	0	Parent=Os04t0648500-01
Chr04	irgsp1_rep	CDS	32996076	32996325	.	-	1	Parent=Os04t0648500-01
Chr04	irgsp1_rep	CDS	32995930	32995983	.	-	0	Parent=Os04t0648500-01
Chr04	irgsp1_rep	CDS	32995663	32995806	.	-	0	Parent=Os04t0648500-01
Chr04	irgsp1_rep	CDS	32995507	32995571	.	-	0	Parent=Os04t0648500-01
Chr04	irgsp1_rep	CDS	32995138	32995192	.	-	1	Parent=Os04t0648500-01
Chr04	irgsp1_rep	CDS	32994895	32995056	.	-	0	Parent=Os04t0648500-01
Chr04	irgsp1_rep	three_prime_UTR	32994714	32994894	.	-	.	Parent=Os04t0648500-01
Chr04	irgsp1_rep	mRNA	33001948	33003003	.	+	.	ID=Os04t0648600-01;Name=Os04t0648600-01;Locus_id=Os04g0648600;Note=Similar to H0821G03.14 protein.;Transcript_evidence=AK108279 (DDBJ%2C Best hit);ORF_evidence=Q25A02 (UniProt);NIAS_FLcDNA=002-141-C11;Expression=AK108279;TENOR=Os04t0648600-01;KEGG=Os04t0648600-01
Chr04	irgsp1_rep	five_prime_UTR	33001948	33001958	.	+	.	Parent=Os04t0648600-01
Chr04	irgsp1_rep	CDS	33001959	33002762	.	+	0	Parent=Os04t0648600-01
Chr04	irgsp1_rep	three_prime_UTR	33002763	33003003	.	+	.	Parent=Os04t0648600-01
Chr04	irgsp1_rep	mRNA	33006324	33012909	.	+	.	ID=Os04t0648700-01;Name=Os04t0648700-01;Locus_id=Os04g0648700;Oryzabase Gene Symbol Synonym(s)=EME1;Note=DNA repair nuclease%2C XPF-type/Helicase domain containing protein.;Transcript_evidence=AK066786 (DDBJ%2C Best hit);ORF_evidence=Q7XT54 (UniProt);GO=Biological Process: DNA metabolic process (GO:0006259),Molecular Function: DNA binding (GO:0003677),Molecular Function: nuclease activity (GO:0004518);InterPro=ERCC4 domain (IPR006166);NIAS_FLcDNA=J013075N15;Oryzabase=21314;TENOR=Os04t0648700-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33006324	33006433	.	+	.	Parent=Os04t0648700-01
Chr04	irgsp1_rep	CDS	33006434	33006959	.	+	0	Parent=Os04t0648700-01
Chr04	irgsp1_rep	CDS	33007716	33007943	.	+	2	Parent=Os04t0648700-01
Chr04	irgsp1_rep	CDS	33008089	33008186	.	+	2	Parent=Os04t0648700-01
Chr04	irgsp1_rep	CDS	33008511	33008555	.	+	0	Parent=Os04t0648700-01
Chr04	irgsp1_rep	CDS	33008639	33008704	.	+	0	Parent=Os04t0648700-01
Chr04	irgsp1_rep	CDS	33008783	33008936	.	+	0	Parent=Os04t0648700-01
Chr04	irgsp1_rep	CDS	33009022	33009131	.	+	2	Parent=Os04t0648700-01
Chr04	irgsp1_rep	CDS	33010088	33010263	.	+	0	Parent=Os04t0648700-01
Chr04	irgsp1_rep	CDS	33010843	33010909	.	+	1	Parent=Os04t0648700-01
Chr04	irgsp1_rep	CDS	33010981	33011096	.	+	0	Parent=Os04t0648700-01
Chr04	irgsp1_rep	CDS	33011250	33011342	.	+	1	Parent=Os04t0648700-01
Chr04	irgsp1_rep	CDS	33012135	33012249	.	+	1	Parent=Os04t0648700-01
Chr04	irgsp1_rep	CDS	33012335	33012493	.	+	0	Parent=Os04t0648700-01
Chr04	irgsp1_rep	three_prime_UTR	33012494	33012909	.	+	.	Parent=Os04t0648700-01
Chr04	irgsp1_rep	mRNA	33014502	33015495	.	-	.	ID=Os04t0648750-01;Name=Os04t0648750-01;Locus_id=Os04g0648750;Note=Hypothetical gene.;Transcript_evidence=AK287532 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065003H20;TENOR=Os04t0648750-01;KEGG=Os04t0648750-01
Chr04	irgsp1_rep	five_prime_UTR	33015478	33015495	.	-	.	Parent=Os04t0648750-01
Chr04	irgsp1_rep	CDS	33015115	33015477	.	-	0	Parent=Os04t0648750-01
Chr04	irgsp1_rep	three_prime_UTR	33014502	33015114	.	-	.	Parent=Os04t0648750-01
Chr04	irgsp1_rep	mRNA	33022824	33028232	.	-	.	ID=Os04t0648775-00;Name=Os04t0648775-00;Locus_id=Os04g0648775;Note=Hypothetical protein.;Transcript_evidence=tplb0043p01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0648775-00
Chr04	irgsp1_rep	five_prime_UTR	33027971	33028232	.	-	.	Parent=Os04t0648775-00
Chr04	irgsp1_rep	five_prime_UTR	33027362	33027488	.	-	.	Parent=Os04t0648775-00
Chr04	irgsp1_rep	five_prime_UTR	33027196	33027285	.	-	.	Parent=Os04t0648775-00
Chr04	irgsp1_rep	five_prime_UTR	33026707	33026746	.	-	.	Parent=Os04t0648775-00
Chr04	irgsp1_rep	five_prime_UTR	33025953	33026104	.	-	.	Parent=Os04t0648775-00
Chr04	irgsp1_rep	five_prime_UTR	33024383	33025865	.	-	.	Parent=Os04t0648775-00
Chr04	irgsp1_rep	CDS	33024326	33024382	.	-	0	Parent=Os04t0648775-00
Chr04	irgsp1_rep	CDS	33023124	33023245	.	-	0	Parent=Os04t0648775-00
Chr04	irgsp1_rep	CDS	33022824	33023067	.	-	1	Parent=Os04t0648775-00
Chr04	irgsp1_rep	mRNA	33022835	33028358	.	+	.	ID=Os04t0648800-01;Name=Os04t0648800-01;Locus_id=Os04g0648800;RAP-DB Gene Symbol Synonym(s)=OsHIP1%2C HIP1%2C HAF1%2C OsHAF1;RAP-DB Gene Name Synonym(s)=OsHAL3-interacting protein 1%2C Heading date Associated Factor 1;CGSNL Gene Symbol=HIP1;CGSNL Gene Name=HAL3-INTERACTING PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsHIP1%2C HAF1%2C OsHAF1;Oryzabase Gene Name Synonym(s)=OsHAL3-interacting protein 1%2C Heading date Associated Factor 1;Note=C3HC4 RING domain-containing E3 ubiquitin ligase%2C Modulation of heading date by physically interacting with Hd1;Transcript_evidence=AK071468;ORF_evidence=Q7XTV7;GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841);NIAS_FLcDNA=J023098C19;Manual Curation=October 16%2C 2015;Literature_PMID=26296966,19543273;Oryzabase=14741;Expression=AK071468;TENOR=Os04t0648800-01;KEGG=Os04t0648800-01
Chr04	irgsp1_rep	five_prime_UTR	33022835	33023235	.	+	.	Parent=Os04t0648800-01
Chr04	irgsp1_rep	five_prime_UTR	33024324	33024409	.	+	.	Parent=Os04t0648800-01
Chr04	irgsp1_rep	CDS	33024410	33025867	.	+	0	Parent=Os04t0648800-01
Chr04	irgsp1_rep	CDS	33025955	33026095	.	+	0	Parent=Os04t0648800-01
Chr04	irgsp1_rep	CDS	33026698	33026748	.	+	0	Parent=Os04t0648800-01
Chr04	irgsp1_rep	CDS	33027198	33027275	.	+	0	Parent=Os04t0648800-01
Chr04	irgsp1_rep	CDS	33027349	33027492	.	+	0	Parent=Os04t0648800-01
Chr04	irgsp1_rep	CDS	33027975	33028106	.	+	0	Parent=Os04t0648800-01
Chr04	irgsp1_rep	three_prime_UTR	33028107	33028358	.	+	.	Parent=Os04t0648800-01
Chr04	irgsp1_rep	mRNA	33022876	33028358	.	+	.	ID=Os04t0648800-02;Name=Os04t0648800-02;Locus_id=Os04g0648800;CGSNL Gene Symbol=HIP1;CGSNL Gene Name=HAL3-INTERACTING PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsHIP1%2C HAF1%2C OsHAF1;Oryzabase Gene Name Synonym(s)=OsHAL3-interacting protein 1%2C Heading date Associated Factor 1;Note=Similar to Zinc finger%2C C3HC4 type family protein.;Transcript_evidence=AK067751 (DDBJ%2C Best hit);ORF_evidence=B6SW07 (UniProt);NIAS_FLcDNA=J013116L22;Oryzabase=14741;TENOR=Os04t0648800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33022876	33023235	.	+	.	Parent=Os04t0648800-02
Chr04	irgsp1_rep	five_prime_UTR	33024324	33024409	.	+	.	Parent=Os04t0648800-02
Chr04	irgsp1_rep	CDS	33024410	33025409	.	+	0	Parent=Os04t0648800-02
Chr04	irgsp1_rep	CDS	33025475	33025491	.	+	2	Parent=Os04t0648800-02
Chr04	irgsp1_rep	three_prime_UTR	33025492	33025867	.	+	.	Parent=Os04t0648800-02
Chr04	irgsp1_rep	three_prime_UTR	33025955	33026095	.	+	.	Parent=Os04t0648800-02
Chr04	irgsp1_rep	three_prime_UTR	33026698	33026748	.	+	.	Parent=Os04t0648800-02
Chr04	irgsp1_rep	three_prime_UTR	33027198	33027275	.	+	.	Parent=Os04t0648800-02
Chr04	irgsp1_rep	three_prime_UTR	33027349	33027492	.	+	.	Parent=Os04t0648800-02
Chr04	irgsp1_rep	three_prime_UTR	33027975	33028358	.	+	.	Parent=Os04t0648800-02
Chr04	irgsp1_rep	mRNA	33030613	33031827	.	-	.	ID=Os04t0648900-01;Name=Os04t0648900-01;Locus_id=Os04g0648900;CGSNL Gene Symbol=ERF8;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 8;Oryzabase Gene Symbol Synonym(s)=OsERF#008%2C OsERF008%2C OsERF8%2C AP2/EREBP#128%2C AP2/EREBP128%2C DLN123%2C OsDLN123;Oryzabase Gene Name Synonym(s)=ethylene response factor 8%2C APETALA2/ethylene-responsive element binding protein 128%2C DLN repressor 123%2C DLN motif protein 123;Note=Similar to Dehydration responsive element binding protein 2F (DREB2F protein).;Transcript_evidence=AK061095 (DDBJ%2C Best hit);ORF_evidence=Q25A30 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=006-207-A04;Oryzabase=10640;Expression=AK061095;TENOR=Os04t0648900-01;KEGG=Os04t0648900-01
Chr04	irgsp1_rep	five_prime_UTR	33031712	33031827	.	-	.	Parent=Os04t0648900-01
Chr04	irgsp1_rep	CDS	33031010	33031711	.	-	0	Parent=Os04t0648900-01
Chr04	irgsp1_rep	three_prime_UTR	33030613	33031009	.	-	.	Parent=Os04t0648900-01
Chr04	irgsp1_rep	mRNA	33030624	33031795	.	-	.	ID=Os04t0648900-02;Name=Os04t0648900-02;Locus_id=Os04g0648900;CGSNL Gene Symbol=ERF8;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 8;Oryzabase Gene Symbol Synonym(s)=OsERF#008%2C OsERF008%2C OsERF8%2C AP2/EREBP#128%2C AP2/EREBP128%2C DLN123%2C OsDLN123;Oryzabase Gene Name Synonym(s)=ethylene response factor 8%2C APETALA2/ethylene-responsive element binding protein 128%2C DLN repressor 123%2C DLN motif protein 123;Note=Similar to Dehydration responsive element binding protein 2F (DREB2F protein).;Transcript_evidence=AK099333 (DDBJ%2C Best hit);ORF_evidence=Q25A30 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J033003O11;Oryzabase=10640;Expression=AK099333;TENOR=Os04t0648900-02;KEGG=Os04t0648900-02
Chr04	irgsp1_rep	five_prime_UTR	33031712	33031795	.	-	.	Parent=Os04t0648900-02
Chr04	irgsp1_rep	CDS	33031010	33031711	.	-	0	Parent=Os04t0648900-02
Chr04	irgsp1_rep	three_prime_UTR	33030624	33031009	.	-	.	Parent=Os04t0648900-02
Chr04	irgsp1_rep	mRNA	33051638	33052729	.	-	.	ID=Os04t0648950-01;Name=Os04t0648950-01;Locus_id=Os04g0648950;Note=Non-protein coding transcript.;Transcript_evidence=AK241486 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065166L21;TENOR=Os04t0648950-01
Chr04	irgsp1_rep	exon	33051638	33052729	.	-	.	Parent=Os04t0648950-01
Chr04	irgsp1_rep	mRNA	33052400	33053859	.	+	.	ID=Os04t0649000-01;Name=Os04t0649000-01;Locus_id=Os04g0649000;Note=Conserved hypothetical protein.;Transcript_evidence=AK241596 (DDBJ%2C Best hit);ORF_evidence=NP_001174122.1 (RefSeq);NIAS_FLcDNA=J065183D15;TENOR=Os04t0649000-01;KEGG=Os04t0649000-01
Chr04	irgsp1_rep	five_prime_UTR	33052400	33053035	.	+	.	Parent=Os04t0649000-01
Chr04	irgsp1_rep	CDS	33053036	33053305	.	+	0	Parent=Os04t0649000-01
Chr04	irgsp1_rep	three_prime_UTR	33053306	33053859	.	+	.	Parent=Os04t0649000-01
Chr04	irgsp1_rep	mRNA	33063500	33066186	.	-	.	ID=Os04t0649051-01;Name=Os04t0649051-01;Locus_id=Os04g0649051;Note=Similar to H0211B05.9 protein.;Transcript_evidence=AK288712 (DDBJ%2C Best hit);ORF_evidence=Q01JA3 (UniProt);InterPro=Domain of unknown function DUF1263 (IPR010685);NIAS_FLcDNA=J090062C22;TENOR=Os04t0649051-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33064758	33066186	.	-	.	Parent=Os04t0649051-01
Chr04	irgsp1_rep	CDS	33064428	33064757	.	-	0	Parent=Os04t0649051-01
Chr04	irgsp1_rep	three_prime_UTR	33063500	33064427	.	-	.	Parent=Os04t0649051-01
Chr04	irgsp1_rep	mRNA	33071622	33074763	.	+	.	ID=Os04t0649100-01;Name=Os04t0649100-01;Locus_id=Os04g0649100;CGSNL Gene Symbol=SHAT1;CGSNL Gene Name=SHATTERING ABORTION 1;Oryzabase Gene Symbol Synonym(s)=SHAT1%2C AP2/EREBP#043%2C AP2/EREBP43%2C AP2-5%2C DLN124%2C OsDLN124;Oryzabase Gene Name Synonym(s)=SHATTERING ABORTION1%2C shattering abortion 1%2C APETALA2/ethylene-responsive element binding protein 43%2C APETALA2-5%2C DLN repressor 124%2C DLN motif protein 124;Note=Similar to cDNA clone:J023121E19%2C full insert sequence.;Transcript_evidence=AK099991 (DDBJ%2C Best hit);ORF_evidence=B7F740 (UniProt);NIAS_FLcDNA=J013131A17;Oryzabase=10404;TENOR=Os04t0649100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33071622	33071878	.	+	.	Parent=Os04t0649100-01
Chr04	irgsp1_rep	five_prime_UTR	33072373	33074316	.	+	.	Parent=Os04t0649100-01
Chr04	irgsp1_rep	CDS	33074317	33074598	.	+	0	Parent=Os04t0649100-01
Chr04	irgsp1_rep	three_prime_UTR	33074599	33074763	.	+	.	Parent=Os04t0649100-01
Chr04	irgsp1_rep	mRNA	33073342	33075371	.	+	.	ID=Os04t0649100-02;Name=Os04t0649100-02;Locus_id=Os04g0649100;CGSNL Gene Symbol=SHAT1;CGSNL Gene Name=SHATTERING ABORTION 1;Oryzabase Gene Symbol Synonym(s)=SHAT1%2C AP2/EREBP#043%2C AP2/EREBP43%2C AP2-5%2C DLN124%2C OsDLN124;Oryzabase Gene Name Synonym(s)=SHATTERING ABORTION1%2C shattering abortion 1%2C APETALA2/ethylene-responsive element binding protein 43%2C APETALA2-5%2C DLN repressor 124%2C DLN motif protein 124;Note=Pathogenesis-related transcriptional factor and ERF domain containing protein.;Transcript_evidence=AK121346 (DDBJ%2C Best hit);ORF_evidence=Q25A26 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J023121E19;Oryzabase=10404;Expression=AK121346;TENOR=Os04t0649100-02;KEGG=Os04t0649100-02
Chr04	irgsp1_rep	five_prime_UTR	33073342	33073342	.	+	.	Parent=Os04t0649100-02
Chr04	irgsp1_rep	CDS	33073343	33073485	.	+	0	Parent=Os04t0649100-02
Chr04	irgsp1_rep	CDS	33073632	33073761	.	+	1	Parent=Os04t0649100-02
Chr04	irgsp1_rep	three_prime_UTR	33073762	33074022	.	+	.	Parent=Os04t0649100-02
Chr04	irgsp1_rep	three_prime_UTR	33074118	33074201	.	+	.	Parent=Os04t0649100-02
Chr04	irgsp1_rep	three_prime_UTR	33074317	33075371	.	+	.	Parent=Os04t0649100-02
Chr04	irgsp1_rep	mRNA	33071970	33074598	.	+	.	ID=Os04t0649100-03;Name=Os04t0649100-03;Locus_id=Os04g0649100;RAP-DB Gene Symbol Synonym(s)=SHAT1%2C AP2/EREBP#043%2C AP2/EREBP43;RAP-DB Gene Name Synonym(s)=SHATTERING ABORTION 1%2C shattering abortion 1%2C APETALA2/ethylene-responsive element binding protein 43;CGSNL Gene Symbol=SHAT1;CGSNL Gene Name=SHATTERING ABORTION 1;Oryzabase Gene Symbol Synonym(s)=SHAT1%2C AP2/EREBP#043%2C AP2/EREBP43%2C AP2-5%2C DLN124%2C OsDLN124;Oryzabase Gene Name Synonym(s)=SHATTERING ABORTION1%2C shattering abortion 1%2C APETALA2/ethylene-responsive element binding protein 43%2C APETALA2-5%2C DLN repressor 124%2C DLN motif protein 124;Note=APETALA2 transcription factor%2C Seed shattering through abscission zone (AZ) development;Transcript_evidence=FO082280 (Oryza rufipogon W1943);ORF_evidence=Q7XT53;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=DNA-binding domain (IPR016177),AP2/ERF domain (IPR001471);Manual Curation=September 10%2C 2014;Literature_PMID=22408071;Oryzabase=10404
Chr04	irgsp1_rep	CDS	33071970	33072355	.	+	0	Parent=Os04t0649100-03
Chr04	irgsp1_rep	CDS	33072660	33072685	.	+	1	Parent=Os04t0649100-03
Chr04	irgsp1_rep	CDS	33072843	33072873	.	+	2	Parent=Os04t0649100-03
Chr04	irgsp1_rep	CDS	33072992	33073079	.	+	1	Parent=Os04t0649100-03
Chr04	irgsp1_rep	CDS	33073196	33073341	.	+	0	Parent=Os04t0649100-03
Chr04	irgsp1_rep	CDS	33073441	33073485	.	+	1	Parent=Os04t0649100-03
Chr04	irgsp1_rep	CDS	33073632	33073723	.	+	1	Parent=Os04t0649100-03
Chr04	irgsp1_rep	CDS	33073820	33074022	.	+	2	Parent=Os04t0649100-03
Chr04	irgsp1_rep	CDS	33074118	33074201	.	+	0	Parent=Os04t0649100-03
Chr04	irgsp1_rep	CDS	33074317	33074598	.	+	0	Parent=Os04t0649100-03
Chr04	irgsp1_rep	mRNA	33080896	33086409	.	-	.	ID=Os04t0649150-00;Name=Os04t0649150-00;Locus_id=Os04g0649150;Note=Hypothetical protein.;Transcript_evidence=tplb0058j18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0649150-00
Chr04	irgsp1_rep	five_prime_UTR	33085624	33086409	.	-	.	Parent=Os04t0649150-00
Chr04	irgsp1_rep	five_prime_UTR	33084986	33085048	.	-	.	Parent=Os04t0649150-00
Chr04	irgsp1_rep	CDS	33084443	33084985	.	-	0	Parent=Os04t0649150-00
Chr04	irgsp1_rep	three_prime_UTR	33083079	33084442	.	-	.	Parent=Os04t0649150-00
Chr04	irgsp1_rep	three_prime_UTR	33082786	33082898	.	-	.	Parent=Os04t0649150-00
Chr04	irgsp1_rep	three_prime_UTR	33082511	33082695	.	-	.	Parent=Os04t0649150-00
Chr04	irgsp1_rep	three_prime_UTR	33080896	33080967	.	-	.	Parent=Os04t0649150-00
Chr04	irgsp1_rep	mRNA	33080927	33086419	.	+	.	ID=Os04t0649200-01;Name=Os04t0649200-01;Locus_id=Os04g0649200;Note=Similar to H0212B02.1 protein.;Transcript_evidence=AK103112 (DDBJ%2C Best hit);ORF_evidence=Q25AN2 (UniProt);InterPro=Protein of unknown function DUF869%2C plant (IPR008587);NIAS_FLcDNA=J033119E14;TENOR=Os04t0649200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33080927	33080982	.	+	.	Parent=Os04t0649200-01
Chr04	irgsp1_rep	five_prime_UTR	33082540	33082569	.	+	.	Parent=Os04t0649200-01
Chr04	irgsp1_rep	CDS	33082570	33082680	.	+	0	Parent=Os04t0649200-01
Chr04	irgsp1_rep	CDS	33082770	33082902	.	+	0	Parent=Os04t0649200-01
Chr04	irgsp1_rep	CDS	33083083	33085042	.	+	2	Parent=Os04t0649200-01
Chr04	irgsp1_rep	CDS	33085118	33085178	.	+	1	Parent=Os04t0649200-01
Chr04	irgsp1_rep	CDS	33085656	33086159	.	+	0	Parent=Os04t0649200-01
Chr04	irgsp1_rep	three_prime_UTR	33086160	33086419	.	+	.	Parent=Os04t0649200-01
Chr04	irgsp1_rep	mRNA	33095273	33096554	.	-	.	ID=Os04t0649400-01;Name=Os04t0649400-01;Locus_id=Os04g0649400;RAP-DB Gene Symbol Synonym(s)=WOX4%2C OsWOX4%2C Os WOX4;RAP-DB Gene Name Synonym(s)=WUSCHEL-LIKE HOMEOBOX 4%2C WUSCHEL-related homeobox 4%2C WUSCHEL-RELATED HOMEOBOX4;CGSNL Gene Symbol=WOX4;CGSNL Gene Name=WUSCHEL-LIKE HOMEOBOX 4;Oryzabase Gene Symbol Synonym(s)=OsWOX4%2C Os WOX4;Oryzabase Gene Name Synonym(s)=WUSCHEL-related homeobox 4%2C WUSCHEL-RELATED HOMEOBOX4;Note=WUSCHEL-related homeobox protein%2C Meristem maintenance;Transcript_evidence=JF836159 (japonica);ORF_evidence=Q7XTV3;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeodomain-like (IPR009057),Homeobox domain (IPR001356);Manual Curation=April 1%2C 2014;Literature_PMID=23371950;Oryzabase=12269;TENOR=Os04t0649400-00
Chr04	irgsp1_rep	five_prime_UTR	33096466	33096554	.	-	.	Parent=Os04t0649400-01
Chr04	irgsp1_rep	CDS	33096220	33096465	.	-	0	Parent=Os04t0649400-01
Chr04	irgsp1_rep	CDS	33095860	33096141	.	-	0	Parent=Os04t0649400-01
Chr04	irgsp1_rep	CDS	33095586	33095768	.	-	0	Parent=Os04t0649400-01
Chr04	irgsp1_rep	three_prime_UTR	33095273	33095585	.	-	.	Parent=Os04t0649400-01
Chr04	irgsp1_rep	mRNA	33101621	33102439	.	-	.	ID=Os04t0649500-01;Name=Os04t0649500-01;Locus_id=Os04g0649500;Note=Similar to H0212B02.4 protein.;Transcript_evidence=AK120461 (DDBJ%2C Best hit);ORF_evidence=Q25AM1 (UniProt);NIAS_FLcDNA=J013107G06;Expression=AK120461;TENOR=Os04t0649500-01;KEGG=Os04t0649500-01
Chr04	irgsp1_rep	five_prime_UTR	33102258	33102439	.	-	.	Parent=Os04t0649500-01
Chr04	irgsp1_rep	CDS	33101925	33102257	.	-	0	Parent=Os04t0649500-01
Chr04	irgsp1_rep	three_prime_UTR	33101621	33101924	.	-	.	Parent=Os04t0649500-01
Chr04	irgsp1_rep	mRNA	33107761	33108336	.	-	.	ID=Os04t0649600-01;Name=Os04t0649600-01;Locus_id=Os04g0649600;Note=Conserved hypothetical protein.;Transcript_evidence=AK105164 (DDBJ%2C Best hit);ORF_evidence=A2XYB2 (UniProt);NIAS_FLcDNA=001-104-D05;Expression=AK105164;TENOR=Os04t0649600-01;KEGG=Os04t0649600-01
Chr04	irgsp1_rep	five_prime_UTR	33108256	33108336	.	-	.	Parent=Os04t0649600-01
Chr04	irgsp1_rep	CDS	33107962	33108255	.	-	0	Parent=Os04t0649600-01
Chr04	irgsp1_rep	three_prime_UTR	33107761	33107961	.	-	.	Parent=Os04t0649600-01
Chr04	irgsp1_rep	mRNA	33109823	33113326	.	-	.	ID=Os04t0649700-01;Name=Os04t0649700-01;Locus_id=Os04g0649700;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK100096 (DDBJ%2C Best hit);ORF_evidence=Q25AM0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023004B22;TENOR=Os04t0649700-01
Chr04	irgsp1_rep	five_prime_UTR	33113232	33113326	.	-	.	Parent=Os04t0649700-01
Chr04	irgsp1_rep	CDS	33111656	33113231	.	-	0	Parent=Os04t0649700-01
Chr04	irgsp1_rep	CDS	33110149	33110705	.	-	2	Parent=Os04t0649700-01
Chr04	irgsp1_rep	three_prime_UTR	33109823	33110148	.	-	.	Parent=Os04t0649700-01
Chr04	irgsp1_rep	mRNA	33109757	33113260	.	-	.	ID=Os04t0649700-02;Name=Os04t0649700-02;Locus_id=Os04g0649700;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK119889 (DDBJ%2C Best hit);ORF_evidence=Q25AM0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-180-A02;Expression=AK119889;TENOR=Os04t0649700-02;KEGG=Os04t0649700-02
Chr04	irgsp1_rep	five_prime_UTR	33113232	33113260	.	-	.	Parent=Os04t0649700-02
Chr04	irgsp1_rep	CDS	33111656	33113231	.	-	0	Parent=Os04t0649700-02
Chr04	irgsp1_rep	CDS	33110149	33110705	.	-	2	Parent=Os04t0649700-02
Chr04	irgsp1_rep	three_prime_UTR	33109757	33110148	.	-	.	Parent=Os04t0649700-02
Chr04	irgsp1_rep	mRNA	33109790	33113228	.	-	.	ID=Os04t0649700-03;Name=Os04t0649700-03;Locus_id=Os04g0649700;Note=Similar to H0212B02.5 protein.;Transcript_evidence=AK120146 (DDBJ%2C Best hit);ORF_evidence=Q25AM0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013028L17;Expression=AK120146;TENOR=Os04t0649700-03;KEGG=Os04t0649700-03
Chr04	irgsp1_rep	CDS	33111656	33113228	.	-	0	Parent=Os04t0649700-03
Chr04	irgsp1_rep	CDS	33110149	33110705	.	-	2	Parent=Os04t0649700-03
Chr04	irgsp1_rep	three_prime_UTR	33109790	33110148	.	-	.	Parent=Os04t0649700-03
Chr04	irgsp1_rep	mRNA	33109718	33110474	.	-	.	ID=Os04t0649700-04;Name=Os04t0649700-04;Locus_id=Os04g0649700;Note=Similar to H0212B02.5 protein.;Transcript_evidence=AK059352 (DDBJ%2C Best hit);ORF_evidence=Q25AM0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-026-C12;Expression=AK059352;TENOR=Os04t0649700-04;KEGG=Os04t0649700-04
Chr04	irgsp1_rep	five_prime_UTR	33110473	33110474	.	-	.	Parent=Os04t0649700-04
Chr04	irgsp1_rep	CDS	33110149	33110472	.	-	0	Parent=Os04t0649700-04
Chr04	irgsp1_rep	three_prime_UTR	33109718	33110148	.	-	.	Parent=Os04t0649700-04
Chr04	irgsp1_rep	mRNA	33109823	33112773	.	-	.	ID=Os04t0649700-05;Name=Os04t0649700-05;Locus_id=Os04g0649700;Note=Similar to H0212B02.5 protein.;Transcript_evidence=AK119579 (DDBJ%2C Best hit);ORF_evidence=Q25AM0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=002-117-B11;TENOR=Os04t0649700-05
Chr04	irgsp1_rep	five_prime_UTR	33112773	33112773	.	-	.	Parent=Os04t0649700-05
Chr04	irgsp1_rep	CDS	33111656	33112772	.	-	0	Parent=Os04t0649700-05
Chr04	irgsp1_rep	CDS	33110149	33110705	.	-	2	Parent=Os04t0649700-05
Chr04	irgsp1_rep	three_prime_UTR	33109823	33110148	.	-	.	Parent=Os04t0649700-05
Chr04	irgsp1_rep	mRNA	33118368	33119696	.	+	.	ID=Os04t0649900-01;Name=Os04t0649900-01;Locus_id=Os04g0649900;Note=Protein of unknown function DUF579%2C plant family protein.;Transcript_evidence=AK061488 (DDBJ%2C Best hit);ORF_evidence=Q25AL9 (UniProt);InterPro=Conserved hypothetical protein CHP01627 (IPR006514),Protein of unknown function DUF579 (IPR021148);NIAS_FLcDNA=006-309-A09;Expression=AK061488;TENOR=Os04t0649900-01;KEGG=Os04t0649900-01
Chr04	irgsp1_rep	five_prime_UTR	33118368	33118553	.	+	.	Parent=Os04t0649900-01
Chr04	irgsp1_rep	CDS	33118554	33119510	.	+	0	Parent=Os04t0649900-01
Chr04	irgsp1_rep	three_prime_UTR	33119511	33119696	.	+	.	Parent=Os04t0649900-01
Chr04	irgsp1_rep	mRNA	33125197	33126987	.	-	.	ID=Os04t0650000-01;Name=Os04t0650000-01;Locus_id=Os04g0650000;CGSNL Gene Symbol=OCP;CGSNL Gene Name=ORYZAIN ALPHA CHAIN;Oryzabase Gene Symbol Synonym(s)=ocp*%2C ocp;Oryzabase Gene Name Synonym(s)=oryzain alpha chain%2C Oryzain alpha chain precursor%2C oryzain alpha%2C Oryzain alpha-A;Note=Similar to Oryzain alpha chain precursor (EC 3.4.22.-).;Transcript_evidence=AK121500 (DDBJ%2C Best hit);ORF_evidence=Q076Q8 (UniProt);GO=Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase C1A%2C papain (IPR013128),Proteinase inhibitor I29%2C cathepsin propeptide (IPR013201);NIAS_FLcDNA=J033022A11;Oryzabase=589;Expression=AK121500;TENOR=Os04t0650000-01;KEGG=Os04t0650000-01 (EC:3.4.22.15)
Chr04	irgsp1_rep	five_prime_UTR	33126924	33126987	.	-	.	Parent=Os04t0650000-01
Chr04	irgsp1_rep	CDS	33126474	33126923	.	-	0	Parent=Os04t0650000-01
Chr04	irgsp1_rep	CDS	33125406	33125432	.	-	0	Parent=Os04t0650000-01
Chr04	irgsp1_rep	three_prime_UTR	33125197	33125405	.	-	.	Parent=Os04t0650000-01
Chr04	irgsp1_rep	mRNA	33123327	33126987	.	-	.	ID=Os04t0650000-02;Name=Os04t0650000-02;Locus_id=Os04g0650000;CGSNL Gene Symbol=OCP;CGSNL Gene Name=ORYZAIN ALPHA CHAIN;Oryzabase Gene Symbol Synonym(s)=ocp*%2C ocp;Oryzabase Gene Name Synonym(s)=oryzain alpha chain%2C Oryzain alpha chain precursor%2C oryzain alpha%2C Oryzain alpha-A;Note=Similar to Oryzain alpha chain precursor (EC 3.4.22.-).;Transcript_evidence=AK071913 (DDBJ%2C Best hit),AK098910 (DDBJ%2C Best hit);ORF_evidence=Q076Q8 (UniProt);NIAS_FLcDNA=J013065M08,J013002H09;Oryzabase=589;TENOR=Os04t0650000-02;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33126924	33126987	.	-	.	Parent=Os04t0650000-02
Chr04	irgsp1_rep	CDS	33126474	33126923	.	-	0	Parent=Os04t0650000-02
Chr04	irgsp1_rep	CDS	33125406	33125432	.	-	0	Parent=Os04t0650000-02
Chr04	irgsp1_rep	three_prime_UTR	33125197	33125405	.	-	.	Parent=Os04t0650000-02
Chr04	irgsp1_rep	three_prime_UTR	33124967	33125107	.	-	.	Parent=Os04t0650000-02
Chr04	irgsp1_rep	three_prime_UTR	33123854	33124303	.	-	.	Parent=Os04t0650000-02
Chr04	irgsp1_rep	three_prime_UTR	33123327	33123757	.	-	.	Parent=Os04t0650000-02
Chr04	irgsp1_rep	mRNA	33123327	33125061	.	-	.	ID=Os04t0650000-03;Name=Os04t0650000-03;Locus_id=Os04g0650000;CGSNL Gene Symbol=OCP;CGSNL Gene Name=ORYZAIN ALPHA CHAIN;Oryzabase Gene Symbol Synonym(s)=ocp*%2C ocp;Oryzabase Gene Name Synonym(s)=oryzain alpha chain%2C Oryzain alpha chain precursor%2C oryzain alpha%2C Oryzain alpha-A;Note=Similar to cDNA clone:J013002H09%2C full insert sequence.;Transcript_evidence=AK061729 (DDBJ%2C Best hit);ORF_evidence=Q076Q8 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Granulin (IPR000118),Peptidase%2C cysteine peptidase active site (IPR000169),Peptidase C1A%2C papain C-terminal (IPR000668),Peptidase C1A%2C papain (IPR013128);NIAS_FLcDNA=001-038-B12;Oryzabase=589;Expression=AK061729;TENOR=Os04t0650000-03;KEGG=Os04t0650000-03;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33125060	33125061	.	-	.	Parent=Os04t0650000-03
Chr04	irgsp1_rep	CDS	33124967	33125059	.	-	0	Parent=Os04t0650000-03
Chr04	irgsp1_rep	CDS	33123854	33124303	.	-	0	Parent=Os04t0650000-03
Chr04	irgsp1_rep	CDS	33123659	33123757	.	-	0	Parent=Os04t0650000-03
Chr04	irgsp1_rep	three_prime_UTR	33123327	33123658	.	-	.	Parent=Os04t0650000-03
Chr04	irgsp1_rep	mRNA	33132306	33134251	.	-	.	ID=Os04t0650200-01;Name=Os04t0650200-01;Locus_id=Os04g0650200;CGSNL Gene Symbol=GELP59;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 59;Oryzabase Gene Symbol Synonym(s)=OsGELP59%2C RMP7;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 59%2C rice microspore-preferred 7;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK109786 (DDBJ%2C Best hit),AK072573 (DDBJ%2C Best hit);ORF_evidence=A2XYB6 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087),Esterase%2C SGNH hydrolase-type%2C subgroup (IPR013831);NIAS_FLcDNA=002-147-C12,J023127K09;Oryzabase=11009;Expression=AK109786;TENOR=Os04t0650200-01;KEGG=Os04t0650200-01
Chr04	irgsp1_rep	five_prime_UTR	33134183	33134251	.	-	.	Parent=Os04t0650200-01
Chr04	irgsp1_rep	CDS	33134122	33134182	.	-	0	Parent=Os04t0650200-01
Chr04	irgsp1_rep	CDS	33133760	33133984	.	-	2	Parent=Os04t0650200-01
Chr04	irgsp1_rep	CDS	33133342	33133610	.	-	2	Parent=Os04t0650200-01
Chr04	irgsp1_rep	CDS	33132913	33133189	.	-	0	Parent=Os04t0650200-01
Chr04	irgsp1_rep	CDS	33132572	33132807	.	-	2	Parent=Os04t0650200-01
Chr04	irgsp1_rep	three_prime_UTR	33132306	33132571	.	-	.	Parent=Os04t0650200-01
Chr04	irgsp1_rep	mRNA	33137073	33137607	.	-	.	ID=Os04t0650300-01;Name=Os04t0650300-01;Locus_id=Os04g0650300;Oryzabase Gene Symbol Synonym(s)=OsGT43I%2C OsGT43B;Oryzabase Gene Name Synonym(s)=glycosyltransferase family GT43 member I;Note=Similar to H0212B02.9 protein.;Transcript_evidence=AK062726 (DDBJ%2C Best hit);ORF_evidence=Q25AL8 (UniProt);NIAS_FLcDNA=001-106-D09;Oryzabase=15257;Expression=AK062726;TENOR=Os04t0650300-01;KEGG=Os04t0650300-01
Chr04	irgsp1_rep	five_prime_UTR	33137607	33137607	.	-	.	Parent=Os04t0650300-01
Chr04	irgsp1_rep	CDS	33137499	33137606	.	-	0	Parent=Os04t0650300-01
Chr04	irgsp1_rep	three_prime_UTR	33137073	33137498	.	-	.	Parent=Os04t0650300-01
Chr04	irgsp1_rep	mRNA	33138624	33139949	.	+	.	ID=Os04t0650333-00;Name=Os04t0650333-00;Locus_id=Os04g0650333;Note=Hypothetical conserved gene.;Transcript_evidence=BT086383 (DDBJ);ORF_evidence=C4J6D6 (UniProt);TENOR=Os04t0650333-00;KEGG=Os04t0650333-00
Chr04	irgsp1_rep	CDS	33138624	33139147	.	+	0	Parent=Os04t0650333-00
Chr04	irgsp1_rep	CDS	33139225	33139801	.	+	1	Parent=Os04t0650333-00
Chr04	irgsp1_rep	three_prime_UTR	33139802	33139949	.	+	.	Parent=Os04t0650333-00
Chr04	irgsp1_rep	mRNA	33138559	33140012	.	-	.	ID=Os04t0650366-00;Name=Os04t0650366-00;Locus_id=Os04g0650366;Oryzabase Gene Symbol Synonym(s)=OsGT43I%2C OsGT43B;Oryzabase Gene Name Synonym(s)=glycosyltransferase family GT43 member I;Note=Similar to H0212B02.9 protein.;Transcript_evidence=AJ969062 (DDBJ);ORF_evidence=Q25AL8 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity (GO:0015018);InterPro=Glycosyl transferase%2C family 43 (IPR005027);Oryzabase=15257;TENOR=Os04t0650366-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33139975	33140012	.	-	.	Parent=Os04t0650366-00
Chr04	irgsp1_rep	CDS	33139238	33139974	.	-	0	Parent=Os04t0650366-00
Chr04	irgsp1_rep	CDS	33138559	33139180	.	-	1	Parent=Os04t0650366-00
Chr04	irgsp1_rep	mRNA	33146316	33146778	.	+	.	ID=Os04t0650416-00;Name=Os04t0650416-00;Locus_id=Os04g0650416;Note=Hypothetical protein.;Transcript_evidence=BT068360 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0650416-00
Chr04	irgsp1_rep	five_prime_UTR	33146316	33146316	.	+	.	Parent=Os04t0650416-00
Chr04	irgsp1_rep	CDS	33146317	33146778	.	+	0	Parent=Os04t0650416-00
Chr04	irgsp1_rep	mRNA	33147439	33150039	.	+	.	ID=Os04t0650500-01;Name=Os04t0650500-01;Locus_id=Os04g0650500;Note=Similar to H0212B02.11 protein.;Transcript_evidence=AK066690 (DDBJ%2C Best hit),AK104273 (DDBJ%2C Best hit);ORF_evidence=Q25AM8 (UniProt);InterPro=Protein of unknown function DUF2930 (IPR021325);NIAS_FLcDNA=J013074C08,006-312-B03;TENOR=Os04t0650500-01
Chr04	irgsp1_rep	five_prime_UTR	33147439	33147560	.	+	.	Parent=Os04t0650500-01
Chr04	irgsp1_rep	CDS	33147561	33147695	.	+	0	Parent=Os04t0650500-01
Chr04	irgsp1_rep	CDS	33147768	33147949	.	+	0	Parent=Os04t0650500-01
Chr04	irgsp1_rep	CDS	33148060	33148159	.	+	1	Parent=Os04t0650500-01
Chr04	irgsp1_rep	CDS	33148236	33148309	.	+	0	Parent=Os04t0650500-01
Chr04	irgsp1_rep	CDS	33148586	33148767	.	+	1	Parent=Os04t0650500-01
Chr04	irgsp1_rep	CDS	33148847	33148917	.	+	2	Parent=Os04t0650500-01
Chr04	irgsp1_rep	CDS	33149174	33149257	.	+	0	Parent=Os04t0650500-01
Chr04	irgsp1_rep	CDS	33149692	33149745	.	+	0	Parent=Os04t0650500-01
Chr04	irgsp1_rep	three_prime_UTR	33149746	33150039	.	+	.	Parent=Os04t0650500-01
Chr04	irgsp1_rep	mRNA	33150022	33153292	.	-	.	ID=Os04t0650600-01;Name=Os04t0650600-01;Locus_id=Os04g0650600;Note=Exonuclease domain containing protein.;Transcript_evidence=AK069859 (DDBJ%2C Best hit);ORF_evidence=Q25AL7 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: exonuclease activity (GO:0004527);InterPro=Exonuclease (IPR006055),Ribonuclease H-like (IPR012337),Exonuclease%2C RNase T/DNA polymerase III (IPR013520);NIAS_FLcDNA=J023036M17;Expression=AK069859;TENOR=Os04t0650600-01;KEGG=Os04t0650600-01
Chr04	irgsp1_rep	five_prime_UTR	33153155	33153292	.	-	.	Parent=Os04t0650600-01
Chr04	irgsp1_rep	CDS	33153122	33153154	.	-	0	Parent=Os04t0650600-01
Chr04	irgsp1_rep	CDS	33152863	33153042	.	-	0	Parent=Os04t0650600-01
Chr04	irgsp1_rep	CDS	33152658	33152747	.	-	0	Parent=Os04t0650600-01
Chr04	irgsp1_rep	CDS	33152473	33152541	.	-	0	Parent=Os04t0650600-01
Chr04	irgsp1_rep	CDS	33152103	33152240	.	-	0	Parent=Os04t0650600-01
Chr04	irgsp1_rep	CDS	33151744	33151860	.	-	0	Parent=Os04t0650600-01
Chr04	irgsp1_rep	CDS	33151597	33151666	.	-	0	Parent=Os04t0650600-01
Chr04	irgsp1_rep	CDS	33151365	33151465	.	-	2	Parent=Os04t0650600-01
Chr04	irgsp1_rep	CDS	33151069	33151203	.	-	0	Parent=Os04t0650600-01
Chr04	irgsp1_rep	CDS	33150885	33150992	.	-	0	Parent=Os04t0650600-01
Chr04	irgsp1_rep	CDS	33150703	33150807	.	-	0	Parent=Os04t0650600-01
Chr04	irgsp1_rep	CDS	33150335	33150580	.	-	0	Parent=Os04t0650600-01
Chr04	irgsp1_rep	three_prime_UTR	33150022	33150334	.	-	.	Parent=Os04t0650600-01
Chr04	irgsp1_rep	mRNA	33161539	33164512	.	+	.	ID=Os04t0650700-01;Name=Os04t0650700-01;Locus_id=Os04g0650700;CGSNL Gene Symbol=ASNASE2;CGSNL Gene Name=ASPARAGINASE 2;Oryzabase Gene Symbol Synonym(s)=OsASNase2%2C ASNase2;Oryzabase Gene Name Synonym(s)=asparaginase2%2C asparaginase 2;Note=Similar to OSIGBa0113E10.3 protein.;Transcript_evidence=AK068693 (DDBJ%2C Best hit);ORF_evidence=Q00RQ3 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Peptidase T2%2C asparaginase 2 (IPR000246);NIAS_FLcDNA=J013163N01;Oryzabase=21606;TENOR=Os04t0650700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33161539	33161609	.	+	.	Parent=Os04t0650700-01
Chr04	irgsp1_rep	CDS	33161610	33162170	.	+	0	Parent=Os04t0650700-01
Chr04	irgsp1_rep	three_prime_UTR	33162171	33163518	.	+	.	Parent=Os04t0650700-01
Chr04	irgsp1_rep	three_prime_UTR	33163608	33163694	.	+	.	Parent=Os04t0650700-01
Chr04	irgsp1_rep	three_prime_UTR	33163780	33164512	.	+	.	Parent=Os04t0650700-01
Chr04	irgsp1_rep	mRNA	33161540	33164510	.	+	.	ID=Os04t0650700-02;Name=Os04t0650700-02;Locus_id=Os04g0650700;CGSNL Gene Symbol=ASNASE2;CGSNL Gene Name=ASPARAGINASE 2;Oryzabase Gene Symbol Synonym(s)=OsASNase2%2C ASNase2;Oryzabase Gene Name Synonym(s)=asparaginase2%2C asparaginase 2;Note=Similar to OSIGBa0113E10.3 protein.;Transcript_evidence=AK121820 (DDBJ%2C Best hit);ORF_evidence=Q00RQ3 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Peptidase T2%2C asparaginase 2 (IPR000246);NIAS_FLcDNA=J033099C17;Oryzabase=21606;TENOR=Os04t0650700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33161540	33161609	.	+	.	Parent=Os04t0650700-02
Chr04	irgsp1_rep	CDS	33161610	33162005	.	+	0	Parent=Os04t0650700-02
Chr04	irgsp1_rep	CDS	33163608	33163694	.	+	0	Parent=Os04t0650700-02
Chr04	irgsp1_rep	CDS	33163780	33164298	.	+	0	Parent=Os04t0650700-02
Chr04	irgsp1_rep	three_prime_UTR	33164299	33164510	.	+	.	Parent=Os04t0650700-02
Chr04	irgsp1_rep	mRNA	33161549	33162987	.	+	.	ID=Os04t0650700-03;Name=Os04t0650700-03;Locus_id=Os04g0650700;CGSNL Gene Symbol=ASNASE2;CGSNL Gene Name=ASPARAGINASE 2;Oryzabase Gene Symbol Synonym(s)=OsASNase2%2C ASNase2;Oryzabase Gene Name Synonym(s)=asparaginase2%2C asparaginase 2;Note=Similar to OSIGBa0113E10.3 protein.;Transcript_evidence=AK061502 (DDBJ%2C Best hit);ORF_evidence=Q00RQ3 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Peptidase T2%2C asparaginase 2 (IPR000246);NIAS_FLcDNA=006-309-E04;Oryzabase=21606;Expression=AK061502;TENOR=Os04t0650700-03;KEGG=Os04t0650700-03 (EC:3.4.19.5)
Chr04	irgsp1_rep	five_prime_UTR	33161549	33161609	.	+	.	Parent=Os04t0650700-03
Chr04	irgsp1_rep	CDS	33161610	33162170	.	+	0	Parent=Os04t0650700-03
Chr04	irgsp1_rep	three_prime_UTR	33162171	33162987	.	+	.	Parent=Os04t0650700-03
Chr04	irgsp1_rep	mRNA	33163240	33164511	.	+	.	ID=Os04t0650700-04;Name=Os04t0650700-04;Locus_id=Os04g0650700;CGSNL Gene Symbol=ASNASE2;CGSNL Gene Name=ASPARAGINASE 2;Oryzabase Gene Symbol Synonym(s)=OsASNase2%2C ASNase2;Oryzabase Gene Name Synonym(s)=asparaginase2%2C asparaginase 2;Note=Similar to OSIGBa0113E10.3 protein.;Transcript_evidence=AK058733 (DDBJ%2C Best hit);ORF_evidence=Q00RQ3 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Peptidase T2%2C asparaginase 2 (IPR000246);NIAS_FLcDNA=001-019-F12;Oryzabase=21606;Expression=AK058733;TENOR=Os04t0650700-04;KEGG=Os04t0650700-04 (EC:3.4.19.5)
Chr04	irgsp1_rep	five_prime_UTR	33163240	33163553	.	+	.	Parent=Os04t0650700-04
Chr04	irgsp1_rep	CDS	33163554	33163694	.	+	0	Parent=Os04t0650700-04
Chr04	irgsp1_rep	CDS	33163780	33164298	.	+	0	Parent=Os04t0650700-04
Chr04	irgsp1_rep	three_prime_UTR	33164299	33164511	.	+	.	Parent=Os04t0650700-04
Chr04	irgsp1_rep	mRNA	33161558	33161863	.	-	.	ID=Os04t0650750-00;Name=Os04t0650750-00;Locus_id=Os04g0650750;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os04t0650750-00
Chr04	irgsp1_rep	CDS	33161558	33161863	.	-	0	Parent=Os04t0650750-00
Chr04	irgsp1_rep	mRNA	33167054	33169881	.	+	.	ID=Os04t0650800-01;Name=Os04t0650800-01;Locus_id=Os04g0650800;Note=Similar to Phosphoglycerate dehydrogenase.;Transcript_evidence=AK120939 (DDBJ%2C Best hit);ORF_evidence=Q25AL6 (UniProt);GO=Biological Process: L-serine biosynthetic process (GO:0006564),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: phosphoglycerate dehydrogenase activity (GO:0004617),Molecular Function: amino acid binding (GO:0016597),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: cofactor binding (GO:0048037),Molecular Function: NAD binding (GO:0051287);InterPro=Amino acid-binding ACT (IPR002912),D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain (IPR006139),D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding (IPR006140),D-3-phosphoglycerate dehydrogenase (IPR006236),Twin-arginine translocation pathway%2C signal sequence (IPR006311),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023037B01;Expression=AK120939;TENOR=Os04t0650800-01;KEGG=Os04t0650800-01 (EC:1.1.1.95)
Chr04	irgsp1_rep	five_prime_UTR	33167054	33167116	.	+	.	Parent=Os04t0650800-01
Chr04	irgsp1_rep	CDS	33167117	33167702	.	+	0	Parent=Os04t0650800-01
Chr04	irgsp1_rep	CDS	33168132	33168508	.	+	2	Parent=Os04t0650800-01
Chr04	irgsp1_rep	CDS	33168630	33168740	.	+	0	Parent=Os04t0650800-01
Chr04	irgsp1_rep	CDS	33168822	33168917	.	+	0	Parent=Os04t0650800-01
Chr04	irgsp1_rep	CDS	33169001	33169672	.	+	0	Parent=Os04t0650800-01
Chr04	irgsp1_rep	three_prime_UTR	33169673	33169881	.	+	.	Parent=Os04t0650800-01
Chr04	irgsp1_rep	mRNA	33168442	33169772	.	+	.	ID=Os04t0650800-02;Name=Os04t0650800-02;Locus_id=Os04g0650800;Note=Similar to H0212B02.14 protein.;Transcript_evidence=AK061345 (DDBJ%2C Best hit);ORF_evidence=Q25AL6 (UniProt);GO=Biological Process: L-serine biosynthetic process (GO:0006564),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: phosphoglycerate dehydrogenase activity (GO:0004617),Molecular Function: amino acid binding (GO:0016597),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: cofactor binding (GO:0048037);InterPro=Amino acid-binding ACT (IPR002912),D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding (IPR006140),D-3-phosphoglycerate dehydrogenase (IPR006236),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=006-303-E11;Expression=AK061345;TENOR=Os04t0650800-02;KEGG=Os04t0650800-02 (EC:1.1.1.95)
Chr04	irgsp1_rep	five_prime_UTR	33168442	33168442	.	+	.	Parent=Os04t0650800-02
Chr04	irgsp1_rep	CDS	33168443	33168508	.	+	0	Parent=Os04t0650800-02
Chr04	irgsp1_rep	CDS	33168630	33168740	.	+	0	Parent=Os04t0650800-02
Chr04	irgsp1_rep	CDS	33168822	33168917	.	+	0	Parent=Os04t0650800-02
Chr04	irgsp1_rep	CDS	33169001	33169672	.	+	0	Parent=Os04t0650800-02
Chr04	irgsp1_rep	three_prime_UTR	33169673	33169772	.	+	.	Parent=Os04t0650800-02
Chr04	irgsp1_rep	mRNA	33170262	33177295	.	-	.	ID=Os04t0650900-01;Name=Os04t0650900-01;Locus_id=Os04g0650900;Note=Similar to Alpha-N-acetylglucosaminidase.;Transcript_evidence=AK064480 (DDBJ%2C Best hit);ORF_evidence=XP_002871580.1 (RefSeq);InterPro=Alpha-N-acetylglucosaminidase (IPR007781),Alpha-N-acetylglucosaminidase%2C tim-barrel domain (IPR024733);NIAS_FLcDNA=002-111-A09;Expression=AK064480;TENOR=Os04t0650900-01;KEGG=Os04t0650900-01 (EC:3.2.1.50)
Chr04	irgsp1_rep	CDS	33177176	33177295	.	-	0	Parent=Os04t0650900-01
Chr04	irgsp1_rep	CDS	33176681	33176766	.	-	0	Parent=Os04t0650900-01
Chr04	irgsp1_rep	CDS	33176112	33176206	.	-	1	Parent=Os04t0650900-01
Chr04	irgsp1_rep	CDS	33175746	33175827	.	-	2	Parent=Os04t0650900-01
Chr04	irgsp1_rep	CDS	33174897	33174900	.	-	1	Parent=Os04t0650900-01
Chr04	irgsp1_rep	three_prime_UTR	33173984	33174896	.	-	.	Parent=Os04t0650900-01
Chr04	irgsp1_rep	three_prime_UTR	33173786	33173833	.	-	.	Parent=Os04t0650900-01
Chr04	irgsp1_rep	three_prime_UTR	33173155	33173265	.	-	.	Parent=Os04t0650900-01
Chr04	irgsp1_rep	three_prime_UTR	33172969	33173070	.	-	.	Parent=Os04t0650900-01
Chr04	irgsp1_rep	three_prime_UTR	33172747	33172845	.	-	.	Parent=Os04t0650900-01
Chr04	irgsp1_rep	three_prime_UTR	33172331	33172441	.	-	.	Parent=Os04t0650900-01
Chr04	irgsp1_rep	three_prime_UTR	33171683	33171927	.	-	.	Parent=Os04t0650900-01
Chr04	irgsp1_rep	three_prime_UTR	33171029	33171266	.	-	.	Parent=Os04t0650900-01
Chr04	irgsp1_rep	three_prime_UTR	33170830	33170908	.	-	.	Parent=Os04t0650900-01
Chr04	irgsp1_rep	three_prime_UTR	33170262	33170750	.	-	.	Parent=Os04t0650900-01
Chr04	irgsp1_rep	mRNA	33179647	33181417	.	-	.	ID=Os04t0651000-01;Name=Os04t0651000-01;Locus_id=Os04g0651000;Oryzabase Gene Symbol Synonym(s)=prx57;Oryzabase Gene Name Synonym(s)=class III peroxidase 57;Note=Similar to Peroxidase.;Transcript_evidence=AK108994 (DDBJ%2C Best hit);ORF_evidence=Q25AM6 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=002-153-G04;Oryzabase=14582;Expression=AK108994;TENOR=Os04t0651000-01;KEGG=Os04t0651000-01
Chr04	irgsp1_rep	five_prime_UTR	33181321	33181417	.	-	.	Parent=Os04t0651000-01
Chr04	irgsp1_rep	CDS	33181107	33181320	.	-	0	Parent=Os04t0651000-01
Chr04	irgsp1_rep	CDS	33180589	33180779	.	-	2	Parent=Os04t0651000-01
Chr04	irgsp1_rep	CDS	33179954	33180508	.	-	0	Parent=Os04t0651000-01
Chr04	irgsp1_rep	three_prime_UTR	33179647	33179953	.	-	.	Parent=Os04t0651000-01
Chr04	irgsp1_rep	mRNA	33188226	33188525	.	+	.	ID=Os04t0651350-00;Name=Os04t0651350-00;Locus_id=Os04g0651350;Note=Hypothetical protein.;Transcript_evidence=EU945377 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0651350-00
Chr04	irgsp1_rep	five_prime_UTR	33188226	33188238	.	+	.	Parent=Os04t0651350-00
Chr04	irgsp1_rep	CDS	33188239	33188525	.	+	0	Parent=Os04t0651350-00
Chr04	irgsp1_rep	mRNA	33190243	33194871	.	+	.	ID=Os04t0651500-01;Name=Os04t0651500-01;Locus_id=Os04g0651500;CGSNL Gene Symbol=WAK55;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 55;Oryzabase Gene Symbol Synonym(s)=OsWAK55;Note=Similar to OSIGBa0113E10.9 protein.;Transcript_evidence=AK288305 (DDBJ%2C Best hit);ORF_evidence=Q00RP7 (UniProt);NIAS_FLcDNA=J090020F20;Oryzabase=6950;TENOR=Os04t0651500-01;KEGG=Os04t0651500-01
Chr04	irgsp1_rep	five_prime_UTR	33190243	33192975	.	+	.	Parent=Os04t0651500-01
Chr04	irgsp1_rep	CDS	33192976	33194097	.	+	0	Parent=Os04t0651500-01
Chr04	irgsp1_rep	three_prime_UTR	33194098	33194871	.	+	.	Parent=Os04t0651500-01
Chr04	irgsp1_rep	mRNA	33196519	33200395	.	-	.	ID=Os04t0651600-00;Name=Os04t0651600-00;Locus_id=Os04g0651600;Note=Similar to OSIGBa0113E10.10 protein.;Transcript_evidence=AK333879 (DDBJ);ORF_evidence=Q00RP6 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);TENOR=Os04t0651600-00
Chr04	irgsp1_rep	CDS	33200279	33200395	.	-	0	Parent=Os04t0651600-00
Chr04	irgsp1_rep	CDS	33197793	33198098	.	-	0	Parent=Os04t0651600-00
Chr04	irgsp1_rep	three_prime_UTR	33197232	33197792	.	-	.	Parent=Os04t0651600-00
Chr04	irgsp1_rep	three_prime_UTR	33196954	33197109	.	-	.	Parent=Os04t0651600-00
Chr04	irgsp1_rep	three_prime_UTR	33196519	33196844	.	-	.	Parent=Os04t0651600-00
Chr04	irgsp1_rep	mRNA	33199257	33199926	.	-	.	ID=Os04t0651700-01;Name=Os04t0651700-01;Locus_id=Os04g0651700;Note=Non-protein coding transcript.;Transcript_evidence=AK105329 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-118-B12;TENOR=Os04t0651700-01
Chr04	irgsp1_rep	exon	33199257	33199926	.	-	.	Parent=Os04t0651700-01
Chr04	irgsp1_rep	mRNA	33215040	33220582	.	-	.	ID=Os04t0652400-01;Name=Os04t0652400-01;Locus_id=Os04g0652400;RAP-DB Gene Symbol Synonym(s)=SULTR3%3B3%2C OsSultr3%3B3%2C OsSul3%3B3%2C OsSULTR3%3B3;RAP-DB Gene Name Synonym(s)=SULPHATE TRANSPORTER 3%3B3%2C sulphate transporter 3%3B3;CGSNL Gene Symbol=LPA;CGSNL Gene Name=LOW PHYTIC ACID;Oryzabase Gene Symbol Synonym(s)=OsSultr3%3B3%2C OsSul3%3B3%2C SULTR3%3B3;Oryzabase Gene Name Synonym(s)=sulphate transporter 3%3B3%2C low phytic acid;Note=Ortholog of the sulfate transporter family group 3 %2C Grain metabolism;Transcript_evidence=AK104831,AK072809;ORF_evidence=Q0J9H5;GO=Biological Process: sulfate transport (GO:0008272),Biological Process: transmembrane transport (GO:0055085),Molecular Function: secondary active sulfate transmembrane transporter activity (GO:0008271),Molecular Function: sulfate transmembrane transporter activity (GO:0015116),Cellular Component: membrane (GO:0016020),Cellular Component: integral component of membrane (GO:0016021);InterPro=SLC26A/SulP transporter (IPR001902),SLC26A/SulP transporter domain (IPR011547),STAS domain (IPR002645);NIAS_FLcDNA=001-042-A04, J023141I19;Manual Curation=April 28%2C 2016;Literature_PMID=27110682;Oryzabase=9322;Expression=AK072809;TENOR=Os04t0652400-01;KEGG=Os04t0652400-01
Chr04	irgsp1_rep	five_prime_UTR	33220504	33220582	.	-	.	Parent=Os04t0652400-01
Chr04	irgsp1_rep	CDS	33220155	33220503	.	-	0	Parent=Os04t0652400-01
Chr04	irgsp1_rep	CDS	33219830	33219877	.	-	2	Parent=Os04t0652400-01
Chr04	irgsp1_rep	CDS	33219479	33219686	.	-	2	Parent=Os04t0652400-01
Chr04	irgsp1_rep	CDS	33219200	33219371	.	-	1	Parent=Os04t0652400-01
Chr04	irgsp1_rep	CDS	33219011	33219076	.	-	0	Parent=Os04t0652400-01
Chr04	irgsp1_rep	CDS	33217187	33217300	.	-	0	Parent=Os04t0652400-01
Chr04	irgsp1_rep	CDS	33216980	33217096	.	-	0	Parent=Os04t0652400-01
Chr04	irgsp1_rep	CDS	33216697	33216823	.	-	0	Parent=Os04t0652400-01
Chr04	irgsp1_rep	CDS	33216285	33216571	.	-	2	Parent=Os04t0652400-01
Chr04	irgsp1_rep	CDS	33216006	33216196	.	-	0	Parent=Os04t0652400-01
Chr04	irgsp1_rep	CDS	33215837	33215916	.	-	1	Parent=Os04t0652400-01
Chr04	irgsp1_rep	CDS	33215623	33215699	.	-	2	Parent=Os04t0652400-01
Chr04	irgsp1_rep	CDS	33215312	33215461	.	-	0	Parent=Os04t0652400-01
Chr04	irgsp1_rep	three_prime_UTR	33215040	33215311	.	-	.	Parent=Os04t0652400-01
Chr04	irgsp1_rep	mRNA	33218444	33220580	.	-	.	ID=Os04t0652400-02;Name=Os04t0652400-02;Locus_id=Os04g0652400;CGSNL Gene Symbol=LPA;CGSNL Gene Name=LOW PHYTIC ACID;Oryzabase Gene Symbol Synonym(s)=OsSultr3%3B3%2C OsSul3%3B3%2C SULTR3%3B3;Oryzabase Gene Name Synonym(s)=sulphate transporter 3%3B3%2C low phytic acid;Note=Similar to OSIGBa0113E10.13 protein.;Transcript_evidence=AK107225 (DDBJ%2C Best hit);ORF_evidence=Q00RP3 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215);InterPro=Sulphate transporter (IPR011547);NIAS_FLcDNA=002-125-D09;Oryzabase=9322;Expression=AK107225;TENOR=Os04t0652400-02;KEGG=Os04t0652400-02
Chr04	irgsp1_rep	five_prime_UTR	33220504	33220580	.	-	.	Parent=Os04t0652400-02
Chr04	irgsp1_rep	CDS	33220155	33220503	.	-	0	Parent=Os04t0652400-02
Chr04	irgsp1_rep	CDS	33219830	33219877	.	-	2	Parent=Os04t0652400-02
Chr04	irgsp1_rep	CDS	33219479	33219686	.	-	2	Parent=Os04t0652400-02
Chr04	irgsp1_rep	CDS	33219200	33219371	.	-	1	Parent=Os04t0652400-02
Chr04	irgsp1_rep	CDS	33219011	33219076	.	-	0	Parent=Os04t0652400-02
Chr04	irgsp1_rep	CDS	33218809	33218820	.	-	0	Parent=Os04t0652400-02
Chr04	irgsp1_rep	three_prime_UTR	33218444	33218808	.	-	.	Parent=Os04t0652400-02
Chr04	irgsp1_rep	mRNA	33216351	33220432	.	+	.	ID=Os04t0652450-00;Name=Os04t0652450-00;Locus_id=Os04g0652450;Note=Hypothetical protein.;Transcript_evidence=tplb0050b20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0652450-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33216351	33216545	.	+	.	Parent=Os04t0652450-00
Chr04	irgsp1_rep	five_prime_UTR	33216671	33216893	.	+	.	Parent=Os04t0652450-00
Chr04	irgsp1_rep	five_prime_UTR	33217144	33217248	.	+	.	Parent=Os04t0652450-00
Chr04	irgsp1_rep	CDS	33217249	33217346	.	+	0	Parent=Os04t0652450-00
Chr04	irgsp1_rep	CDS	33219196	33219373	.	+	1	Parent=Os04t0652450-00
Chr04	irgsp1_rep	CDS	33219481	33219686	.	+	0	Parent=Os04t0652450-00
Chr04	irgsp1_rep	CDS	33219830	33219890	.	+	1	Parent=Os04t0652450-00
Chr04	irgsp1_rep	CDS	33220171	33220398	.	+	0	Parent=Os04t0652450-00
Chr04	irgsp1_rep	three_prime_UTR	33220399	33220432	.	+	.	Parent=Os04t0652450-00
Chr04	irgsp1_rep	mRNA	33225809	33230258	.	-	.	ID=Os04t0652500-00;Name=Os04t0652500-00;Locus_id=Os04g0652500;Note=Similar to OSIGBa0113E10.14 protein.;Transcript_evidence=EU974424 (DDBJ);ORF_evidence=Q00RP2 (UniProt);InterPro=Golgin subfamily A member 5 (IPR019177);TENOR=Os04t0652500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33230200	33230258	.	-	.	Parent=Os04t0652500-00
Chr04	irgsp1_rep	CDS	33230146	33230199	.	-	0	Parent=Os04t0652500-00
Chr04	irgsp1_rep	CDS	33229470	33230051	.	-	0	Parent=Os04t0652500-00
Chr04	irgsp1_rep	CDS	33228615	33228725	.	-	0	Parent=Os04t0652500-00
Chr04	irgsp1_rep	CDS	33228408	33228467	.	-	0	Parent=Os04t0652500-00
Chr04	irgsp1_rep	CDS	33227567	33227624	.	-	0	Parent=Os04t0652500-00
Chr04	irgsp1_rep	CDS	33227319	33227374	.	-	2	Parent=Os04t0652500-00
Chr04	irgsp1_rep	CDS	33227065	33227157	.	-	0	Parent=Os04t0652500-00
Chr04	irgsp1_rep	CDS	33226573	33226698	.	-	0	Parent=Os04t0652500-00
Chr04	irgsp1_rep	CDS	33226274	33226321	.	-	0	Parent=Os04t0652500-00
Chr04	irgsp1_rep	CDS	33225818	33226171	.	-	0	Parent=Os04t0652500-00
Chr04	irgsp1_rep	three_prime_UTR	33225809	33225817	.	-	.	Parent=Os04t0652500-00
Chr04	irgsp1_rep	mRNA	33225818	33230268	.	+	.	ID=Os04t0652550-00;Name=Os04t0652550-00;Locus_id=Os04g0652550;Note=Hypothetical protein.;Transcript_evidence=tplb0042l03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0652550-00
Chr04	irgsp1_rep	five_prime_UTR	33225818	33226176	.	+	.	Parent=Os04t0652550-00
Chr04	irgsp1_rep	five_prime_UTR	33226538	33226697	.	+	.	Parent=Os04t0652550-00
Chr04	irgsp1_rep	five_prime_UTR	33227064	33227167	.	+	.	Parent=Os04t0652550-00
Chr04	irgsp1_rep	five_prime_UTR	33227334	33227374	.	+	.	Parent=Os04t0652550-00
Chr04	irgsp1_rep	five_prime_UTR	33227567	33227627	.	+	.	Parent=Os04t0652550-00
Chr04	irgsp1_rep	five_prime_UTR	33228414	33228462	.	+	.	Parent=Os04t0652550-00
Chr04	irgsp1_rep	five_prime_UTR	33228606	33228702	.	+	.	Parent=Os04t0652550-00
Chr04	irgsp1_rep	CDS	33228703	33228724	.	+	0	Parent=Os04t0652550-00
Chr04	irgsp1_rep	CDS	33229469	33230051	.	+	2	Parent=Os04t0652550-00
Chr04	irgsp1_rep	CDS	33230146	33230242	.	+	1	Parent=Os04t0652550-00
Chr04	irgsp1_rep	three_prime_UTR	33230243	33230268	.	+	.	Parent=Os04t0652550-00
Chr04	irgsp1_rep	mRNA	33245194	33251252	.	+	.	ID=Os04t0652600-01;Name=Os04t0652600-01;Locus_id=Os04g0652600;Note=Similar to OSIGBa0113E10.15 protein.;Transcript_evidence=AK107489 (DDBJ%2C Best hit);ORF_evidence=Q00RP1 (UniProt);InterPro=Peptidase C65%2C otubain (IPR019400);NIAS_FLcDNA=002-129-C12;Expression=AK107489;TENOR=Os04t0652600-01;KEGG=Os04t0652600-01
Chr04	irgsp1_rep	CDS	33245194	33245388	.	+	0	Parent=Os04t0652600-01
Chr04	irgsp1_rep	CDS	33246325	33246408	.	+	0	Parent=Os04t0652600-01
Chr04	irgsp1_rep	CDS	33246561	33246626	.	+	0	Parent=Os04t0652600-01
Chr04	irgsp1_rep	CDS	33247047	33247130	.	+	0	Parent=Os04t0652600-01
Chr04	irgsp1_rep	CDS	33247283	33247348	.	+	0	Parent=Os04t0652600-01
Chr04	irgsp1_rep	CDS	33247821	33247904	.	+	0	Parent=Os04t0652600-01
Chr04	irgsp1_rep	CDS	33248057	33248122	.	+	0	Parent=Os04t0652600-01
Chr04	irgsp1_rep	CDS	33248425	33248490	.	+	0	Parent=Os04t0652600-01
Chr04	irgsp1_rep	CDS	33248769	33248828	.	+	0	Parent=Os04t0652600-01
Chr04	irgsp1_rep	CDS	33248907	33248990	.	+	0	Parent=Os04t0652600-01
Chr04	irgsp1_rep	CDS	33249070	33249213	.	+	0	Parent=Os04t0652600-01
Chr04	irgsp1_rep	CDS	33249654	33249688	.	+	0	Parent=Os04t0652600-01
Chr04	irgsp1_rep	CDS	33249796	33249848	.	+	1	Parent=Os04t0652600-01
Chr04	irgsp1_rep	CDS	33249930	33250030	.	+	2	Parent=Os04t0652600-01
Chr04	irgsp1_rep	CDS	33250618	33251076	.	+	0	Parent=Os04t0652600-01
Chr04	irgsp1_rep	three_prime_UTR	33251077	33251252	.	+	.	Parent=Os04t0652600-01
Chr04	irgsp1_rep	mRNA	33253920	33256572	.	+	.	ID=Os04t0652700-01;Name=Os04t0652700-01;Locus_id=Os04g0652700;Note=Similar to Nuclease PA3.;Transcript_evidence=AK106059 (DDBJ%2C Best hit);ORF_evidence=B6T329 (UniProt);GO=Biological Process: DNA catabolic process (GO:0006308),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: endonuclease activity (GO:0004519),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=S1/P1 nuclease (IPR003154),Phospholipase C/P1 nuclease%2C core (IPR008947);NIAS_FLcDNA=001-206-F11;TENOR=Os04t0652700-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33253920	33253945	.	+	.	Parent=Os04t0652700-01
Chr04	irgsp1_rep	CDS	33253946	33254065	.	+	0	Parent=Os04t0652700-01
Chr04	irgsp1_rep	CDS	33254151	33254322	.	+	0	Parent=Os04t0652700-01
Chr04	irgsp1_rep	CDS	33255235	33255327	.	+	2	Parent=Os04t0652700-01
Chr04	irgsp1_rep	CDS	33255434	33255573	.	+	2	Parent=Os04t0652700-01
Chr04	irgsp1_rep	CDS	33255682	33255774	.	+	0	Parent=Os04t0652700-01
Chr04	irgsp1_rep	CDS	33255871	33255938	.	+	0	Parent=Os04t0652700-01
Chr04	irgsp1_rep	CDS	33256029	33256097	.	+	1	Parent=Os04t0652700-01
Chr04	irgsp1_rep	CDS	33256208	33256325	.	+	1	Parent=Os04t0652700-01
Chr04	irgsp1_rep	three_prime_UTR	33256326	33256572	.	+	.	Parent=Os04t0652700-01
Chr04	irgsp1_rep	mRNA	33255871	33256535	.	+	.	ID=Os04t0652700-02;Name=Os04t0652700-02;Locus_id=Os04g0652700;Note=Similar to nuclease PA3.;Transcript_evidence=AK059436 (DDBJ%2C Best hit);ORF_evidence=B6T329 (UniProt);GO=Biological Process: DNA catabolic process (GO:0006308),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: endonuclease activity (GO:0004519),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=S1/P1 nuclease (IPR003154),Phospholipase C/P1 nuclease%2C core (IPR008947);NIAS_FLcDNA=001-027-F11;Expression=AK059436;TENOR=Os04t0652700-02;KEGG=Os04t0652700-02
Chr04	irgsp1_rep	CDS	33255871	33255938	.	+	0	Parent=Os04t0652700-02
Chr04	irgsp1_rep	CDS	33256029	33256097	.	+	1	Parent=Os04t0652700-02
Chr04	irgsp1_rep	CDS	33256208	33256325	.	+	1	Parent=Os04t0652700-02
Chr04	irgsp1_rep	three_prime_UTR	33256326	33256535	.	+	.	Parent=Os04t0652700-02
Chr04	irgsp1_rep	mRNA	33258681	33261192	.	-	.	ID=Os04t0652900-01;Name=Os04t0652900-01;Locus_id=Os04g0652900;Note=Peptidyl-tRNA hydrolase%2C PTH2 domain containing protein.;Transcript_evidence=AK071125 (DDBJ%2C Best hit);ORF_evidence=B4FSD3 (UniProt);GO=Molecular Function: aminoacyl-tRNA hydrolase activity (GO:0004045);InterPro=Peptidyl-tRNA hydrolase%2C PTH2 (IPR002833),Peptidyl-tRNA hydrolase II domain (IPR023476);NIAS_FLcDNA=J023082K03;Expression=AK071125;TENOR=Os04t0652900-01;KEGG=Os04t0652900-01 (EC:3.1.1.29)
Chr04	irgsp1_rep	five_prime_UTR	33261114	33261192	.	-	.	Parent=Os04t0652900-01
Chr04	irgsp1_rep	CDS	33260715	33261113	.	-	0	Parent=Os04t0652900-01
Chr04	irgsp1_rep	CDS	33260543	33260601	.	-	0	Parent=Os04t0652900-01
Chr04	irgsp1_rep	CDS	33259969	33260028	.	-	1	Parent=Os04t0652900-01
Chr04	irgsp1_rep	CDS	33259774	33259843	.	-	1	Parent=Os04t0652900-01
Chr04	irgsp1_rep	CDS	33259231	33259300	.	-	0	Parent=Os04t0652900-01
Chr04	irgsp1_rep	CDS	33259114	33259140	.	-	2	Parent=Os04t0652900-01
Chr04	irgsp1_rep	CDS	33258980	33259029	.	-	2	Parent=Os04t0652900-01
Chr04	irgsp1_rep	three_prime_UTR	33258681	33258979	.	-	.	Parent=Os04t0652900-01
Chr04	irgsp1_rep	mRNA	33306468	33310169	.	+	.	ID=Os04t0653000-01;Name=Os04t0653000-01;Locus_id=Os04g0653000;RAP-DB Gene Symbol Synonym(s)=EG2%2C OsTIFY3%2C OsJAZ10%2C OsJAZ 1%2C OsJAZ1%2C EG2/OsJAZ1%2C JAZ1/EG2;RAP-DB Gene Name Synonym(s)=EXTRA GLUME 2%2C Jasmonate ZIM-domain protein 1%2C Jasmonate ZIM-domain protein 10%2C extra glume 2%2C TIFY gene 3;CGSNL Gene Symbol=EG2;CGSNL Gene Name=EXTRA GLUME 2;Oryzabase Gene Symbol Synonym(s)=OsTIFY3%2C OsJAZ10%2C OsJAZ 1%2C OsJAZ1%2C JAZ1%2C EG2/OsJAZ1%2C EG2%2C JAZ1/EG2;Oryzabase Gene Name Synonym(s)=Jasmonate ZIM-domain protein 1%2C Jasmonate ZIM-domain protein 10%2C extra glume 2%2C TIFY gene 3;Note=Jasmonic acid (JA) signalling repressor%2C Regulation of spikelet development;Transcript_evidence=AK069326,AK059441,XM_015780204;ORF_evidence=Q7XPM8;InterPro=Tify domain (IPR010399),CO/COL/TOC1%2C conserved site (IPR018467);NIAS_FLcDNA=J023014L02, 001-027-H07;Manual Curation=July 11%2C 2016;Literature_PMID=24647160;Oryzabase=9496;TENOR=Os04t0653000-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33306468	33306608	.	+	.	Parent=Os04t0653000-01
Chr04	irgsp1_rep	CDS	33306609	33306781	.	+	0	Parent=Os04t0653000-01
Chr04	irgsp1_rep	CDS	33308837	33308939	.	+	1	Parent=Os04t0653000-01
Chr04	irgsp1_rep	CDS	33309031	33309256	.	+	0	Parent=Os04t0653000-01
Chr04	irgsp1_rep	CDS	33309370	33309427	.	+	2	Parent=Os04t0653000-01
Chr04	irgsp1_rep	CDS	33309739	33309829	.	+	1	Parent=Os04t0653000-01
Chr04	irgsp1_rep	three_prime_UTR	33309830	33310169	.	+	.	Parent=Os04t0653000-01
Chr04	irgsp1_rep	mRNA	33311330	33313304	.	-	.	ID=Os04t0653100-01;Name=Os04t0653100-01;Locus_id=Os04g0653100;Note=Uncharacterised protein family UPF0136%2C Transmembrane domain containing protein.;Transcript_evidence=AK373662 (DDBJ);ORF_evidence=NP_001054104.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Uncharacterised protein family UPF0136%2C Transmembrane (IPR005349);TENOR=Os04t0653100-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	33312659	33313304	.	-	0	Parent=Os04t0653100-01
Chr04	irgsp1_rep	CDS	33311592	33311726	.	-	2	Parent=Os04t0653100-01
Chr04	irgsp1_rep	CDS	33311330	33311472	.	-	2	Parent=Os04t0653100-01
Chr04	irgsp1_rep	mRNA	33314700	33319036	.	+	.	ID=Os04t0653200-01;Name=Os04t0653200-01;Locus_id=Os04g0653200;CGSNL Gene Symbol=CAX3;CGSNL Gene Name=Ca(2+)/H(+) EXCHANGER 3;Oryzabase Gene Symbol Synonym(s)=OsCAX3%2C CAX6%2C OsNCX9%2C OsNCX9.1%2C OsNCX9.2%2C NCX9;Oryzabase Gene Name Synonym(s)=Vacuolar cation/proton exchanger 3%2C Ca(2+)/H(+) exchanger 3%2C cation/H+ exchanger 3%2C Na+/Ca2+ Exchanger 9%2C Sodium/calcium exchanger 9;Note=Similar to Low affinity calcium transporter CAX2 (Fragment).;Transcript_evidence=AK073795 (DDBJ%2C Best hit);ORF_evidence=Q6K1C4 (UniProt);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: cation transmembrane transporter activity (GO:0008324);InterPro=Calcium/proton exchanger (IPR004713),Calcium/proton exchanger superfamily (IPR004798),Sodium/calcium exchanger membrane region (IPR004837);NIAS_FLcDNA=J033068D06;Oryzabase=8983;Expression=AK073795;TENOR=Os04t0653200-01;KEGG=Os04t0653200-01
Chr04	irgsp1_rep	five_prime_UTR	33314700	33315006	.	+	.	Parent=Os04t0653200-01
Chr04	irgsp1_rep	five_prime_UTR	33315329	33315331	.	+	.	Parent=Os04t0653200-01
Chr04	irgsp1_rep	CDS	33315332	33315550	.	+	0	Parent=Os04t0653200-01
Chr04	irgsp1_rep	CDS	33315815	33315882	.	+	0	Parent=Os04t0653200-01
Chr04	irgsp1_rep	CDS	33315953	33315981	.	+	1	Parent=Os04t0653200-01
Chr04	irgsp1_rep	CDS	33316073	33316269	.	+	2	Parent=Os04t0653200-01
Chr04	irgsp1_rep	CDS	33316347	33316559	.	+	0	Parent=Os04t0653200-01
Chr04	irgsp1_rep	CDS	33316721	33316855	.	+	0	Parent=Os04t0653200-01
Chr04	irgsp1_rep	CDS	33317222	33317338	.	+	0	Parent=Os04t0653200-01
Chr04	irgsp1_rep	CDS	33317432	33317485	.	+	0	Parent=Os04t0653200-01
Chr04	irgsp1_rep	CDS	33317674	33317790	.	+	0	Parent=Os04t0653200-01
Chr04	irgsp1_rep	CDS	33318299	33318392	.	+	0	Parent=Os04t0653200-01
Chr04	irgsp1_rep	CDS	33318675	33318685	.	+	2	Parent=Os04t0653200-01
Chr04	irgsp1_rep	three_prime_UTR	33318686	33319036	.	+	.	Parent=Os04t0653200-01
Chr04	irgsp1_rep	mRNA	33325306	33325943	.	+	.	ID=Os04t0653300-00;Name=Os04t0653300-00;Locus_id=Os04g0653300;Note=Aux/IAA_ARF_dimerisation domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=D3K0M9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Aux/IAA-ARF-dimerisation (IPR011525);TENOR=Os04t0653300-00;KEGG=Os04t0653300-00
Chr04	irgsp1_rep	CDS	33325306	33325739	.	+	0	Parent=Os04t0653300-00
Chr04	irgsp1_rep	CDS	33325868	33325943	.	+	1	Parent=Os04t0653300-00
Chr04	irgsp1_rep	mRNA	33329793	33335864	.	+	.	ID=Os04t0653400-01;Name=Os04t0653400-01;Locus_id=Os04g0653400;Oryzabase Gene Symbol Synonym(s)=OsCPR1%2C CPR1;Oryzabase Gene Name Synonym(s)=cytoChrome P450 reductase 1%2C NADPH-cytoChrome P450 reductase 1;Note=Similar to NADPH-cytoChrome P450 reductase (Fragment).;Transcript_evidence=AK243608 (DDBJ%2C Best hit);ORF_evidence=Q9FVM7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: NADPH-hemoprotein reductase activity (GO:0003958),Molecular Function: iron ion binding (GO:0005506),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Flavodoxin (IPR001094),Oxidoreductase FAD/NAD(P)-binding (IPR001433),Flavoprotein pyridine nucleotide cytoChrome reductase (IPR001709),FAD-binding%2C type 1 (IPR003097),Flavodoxin/nitric oxide synthase (IPR008254),Ferredoxin reductase-type FAD-binding domain (IPR017927),Riboflavin synthase-like beta-barrel (IPR017938),NADPH-cytoChrome p450 reductase%2C FAD-binding%2C alpha-helical domain-3 (IPR023173),NADPH-cytoChrome P450 reductase (IPR023208);NIAS_FLcDNA=J100085F02;Oryzabase=12130;TENOR=Os04t0653400-01;KEGG=Os04t0653400-01 (EC:1.6.2.4)
Chr04	irgsp1_rep	five_prime_UTR	33329793	33329883	.	+	.	Parent=Os04t0653400-01
Chr04	irgsp1_rep	CDS	33329884	33330186	.	+	0	Parent=Os04t0653400-01
Chr04	irgsp1_rep	CDS	33330321	33330380	.	+	0	Parent=Os04t0653400-01
Chr04	irgsp1_rep	CDS	33330488	33330564	.	+	0	Parent=Os04t0653400-01
Chr04	irgsp1_rep	CDS	33331132	33331189	.	+	1	Parent=Os04t0653400-01
Chr04	irgsp1_rep	CDS	33331279	33331362	.	+	0	Parent=Os04t0653400-01
Chr04	irgsp1_rep	CDS	33331458	33331494	.	+	0	Parent=Os04t0653400-01
Chr04	irgsp1_rep	CDS	33331955	33332024	.	+	2	Parent=Os04t0653400-01
Chr04	irgsp1_rep	CDS	33332755	33332949	.	+	1	Parent=Os04t0653400-01
Chr04	irgsp1_rep	CDS	33333047	33333139	.	+	1	Parent=Os04t0653400-01
Chr04	irgsp1_rep	CDS	33333287	33333518	.	+	1	Parent=Os04t0653400-01
Chr04	irgsp1_rep	CDS	33333615	33333698	.	+	0	Parent=Os04t0653400-01
Chr04	irgsp1_rep	CDS	33333788	33333939	.	+	0	Parent=Os04t0653400-01
Chr04	irgsp1_rep	CDS	33334305	33334401	.	+	1	Parent=Os04t0653400-01
Chr04	irgsp1_rep	CDS	33334528	33334677	.	+	0	Parent=Os04t0653400-01
Chr04	irgsp1_rep	CDS	33334762	33334839	.	+	0	Parent=Os04t0653400-01
Chr04	irgsp1_rep	CDS	33334923	33335045	.	+	0	Parent=Os04t0653400-01
Chr04	irgsp1_rep	CDS	33335159	33335272	.	+	0	Parent=Os04t0653400-01
Chr04	irgsp1_rep	CDS	33335388	33335468	.	+	0	Parent=Os04t0653400-01
Chr04	irgsp1_rep	three_prime_UTR	33335469	33335864	.	+	.	Parent=Os04t0653400-01
Chr04	irgsp1_rep	mRNA	33334267	33334365	.	-	.	ID=Os04t0653500-00;Name=Os04t0653500-00;Locus_id=Os04g0653500;Note=Non-protein coding transcript.;Transcript_evidence=DQ285567 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0653500-00
Chr04	irgsp1_rep	exon	33334267	33334365	.	-	.	Parent=Os04t0653500-00
Chr04	irgsp1_rep	mRNA	33341978	33346528	.	+	.	ID=Os04t0653600-01;Name=Os04t0653600-01;Locus_id=Os04g0653600;CGSNL Gene Symbol=PLT1;CGSNL Gene Name=PLETHORA 1;Oryzabase Gene Symbol Synonym(s)=OsPLT1%2C AP2/EREBP#044%2C AP2/EREBP44;Oryzabase Gene Name Synonym(s)=Plethora 1%2C APETALA2/ethylene-responsive element binding protein 44;Note=Similar to AINTEGUMENTA-like protein.;Transcript_evidence=AK111891 (DDBJ%2C Best hit);ORF_evidence=Q8LGQ4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J033072A06;Oryzabase=10464;Expression=AK111891;TENOR=Os04t0653600-01;KEGG=Os04t0653600-01
Chr04	irgsp1_rep	five_prime_UTR	33341978	33342087	.	+	.	Parent=Os04t0653600-01
Chr04	irgsp1_rep	CDS	33342088	33342145	.	+	0	Parent=Os04t0653600-01
Chr04	irgsp1_rep	CDS	33342261	33342651	.	+	2	Parent=Os04t0653600-01
Chr04	irgsp1_rep	CDS	33342930	33343012	.	+	1	Parent=Os04t0653600-01
Chr04	irgsp1_rep	CDS	33343172	33343180	.	+	2	Parent=Os04t0653600-01
Chr04	irgsp1_rep	CDS	33343309	33343397	.	+	2	Parent=Os04t0653600-01
Chr04	irgsp1_rep	CDS	33343581	33343654	.	+	0	Parent=Os04t0653600-01
Chr04	irgsp1_rep	CDS	33343868	33343918	.	+	1	Parent=Os04t0653600-01
Chr04	irgsp1_rep	CDS	33344034	33344110	.	+	1	Parent=Os04t0653600-01
Chr04	irgsp1_rep	CDS	33345319	33345974	.	+	2	Parent=Os04t0653600-01
Chr04	irgsp1_rep	three_prime_UTR	33345975	33346528	.	+	.	Parent=Os04t0653600-01
Chr04	irgsp1_rep	mRNA	33346061	33346396	.	+	.	ID=Os04t0653600-02;Name=Os04t0653600-02;Locus_id=Os04g0653600;CGSNL Gene Symbol=PLT1;CGSNL Gene Name=PLETHORA 1;Oryzabase Gene Symbol Synonym(s)=OsPLT1%2C AP2/EREBP#044%2C AP2/EREBP44;Oryzabase Gene Name Synonym(s)=Plethora 1%2C APETALA2/ethylene-responsive element binding protein 44;Note=Non-protein coding transcript.;Transcript_evidence=AK059064 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-021-G08;Oryzabase=10464;TENOR=Os04t0653600-02
Chr04	irgsp1_rep	exon	33346061	33346396	.	+	.	Parent=Os04t0653600-02
Chr04	irgsp1_rep	mRNA	33347881	33348507	.	-	.	ID=Os04t0653700-01;Name=Os04t0653700-01;Locus_id=Os04g0653700;Oryzabase Gene Name Synonym(s)=glycine-rich RNA-binding protein;Note=Conserved hypothetical protein.;Transcript_evidence=AK062771 (DDBJ%2C Best hit);ORF_evidence=B8AVL3 (UniProt);NIAS_FLcDNA=001-107-A03;Oryzabase=23062;Expression=AK062771;TENOR=Os04t0653700-01;KEGG=Os04t0653700-01
Chr04	irgsp1_rep	five_prime_UTR	33348307	33348507	.	-	.	Parent=Os04t0653700-01
Chr04	irgsp1_rep	CDS	33347953	33348306	.	-	0	Parent=Os04t0653700-01
Chr04	irgsp1_rep	three_prime_UTR	33347881	33347952	.	-	.	Parent=Os04t0653700-01
Chr04	irgsp1_rep	mRNA	33374335	33375212	.	-	.	ID=Os04t0654400-01;Name=Os04t0654400-01;Locus_id=Os04g0654400;Note=Eggshell protein family protein.;Transcript_evidence=AK107905 (DDBJ%2C Best hit);ORF_evidence=Q01KL7 (UniProt);NIAS_FLcDNA=002-134-F12;Expression=AK107905;TENOR=Os04t0654400-01;KEGG=Os04t0654400-01
Chr04	irgsp1_rep	five_prime_UTR	33375099	33375212	.	-	.	Parent=Os04t0654400-01
Chr04	irgsp1_rep	CDS	33374806	33375098	.	-	0	Parent=Os04t0654400-01
Chr04	irgsp1_rep	CDS	33374436	33374727	.	-	1	Parent=Os04t0654400-01
Chr04	irgsp1_rep	three_prime_UTR	33374335	33374435	.	-	.	Parent=Os04t0654400-01
Chr04	irgsp1_rep	mRNA	33377245	33378457	.	-	.	ID=Os04t0654500-01;Name=Os04t0654500-01;Locus_id=Os04g0654500;Note=Conserved hypothetical protein.;Transcript_evidence=AK243566 (DDBJ%2C Best hit);ORF_evidence=Q67UM2 (UniProt);NIAS_FLcDNA=J100081F17;TENOR=Os04t0654500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33377689	33378457	.	-	.	Parent=Os04t0654500-01
Chr04	irgsp1_rep	CDS	33377338	33377688	.	-	0	Parent=Os04t0654500-01
Chr04	irgsp1_rep	three_prime_UTR	33377245	33377337	.	-	.	Parent=Os04t0654500-01
Chr04	irgsp1_rep	mRNA	33383015	33383987	.	+	.	ID=Os04t0654550-00;Name=Os04t0654550-00;Locus_id=Os04g0654550;Note=General substrate transporter domain containing protein.;Transcript_evidence=BT009593 (DDBJ);ORF_evidence=XP_002467580.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transmembrane transporter activity (GO:0022857);InterPro=General substrate transporter (IPR005828);TENOR=Os04t0654550-00
Chr04	irgsp1_rep	five_prime_UTR	33383015	33383211	.	+	.	Parent=Os04t0654550-00
Chr04	irgsp1_rep	five_prime_UTR	33383426	33383426	.	+	.	Parent=Os04t0654550-00
Chr04	irgsp1_rep	CDS	33383427	33383613	.	+	0	Parent=Os04t0654550-00
Chr04	irgsp1_rep	CDS	33383770	33383786	.	+	2	Parent=Os04t0654550-00
Chr04	irgsp1_rep	three_prime_UTR	33383787	33383987	.	+	.	Parent=Os04t0654550-00
Chr04	irgsp1_rep	mRNA	33386622	33391644	.	+	.	ID=Os04t0654600-01;Name=Os04t0654600-01;Locus_id=Os04g0654600;CGSNL Gene Symbol=RLCK167;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 167;Oryzabase Gene Symbol Synonym(s)=OsRLCK167;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 167;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK111497 (DDBJ%2C Best hit);ORF_evidence=Q01KL6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J013000H21;Oryzabase=18870;Expression=AK111497;TENOR=Os04t0654600-01;KEGG=Os04t0654600-01
Chr04	irgsp1_rep	five_prime_UTR	33386622	33386949	.	+	.	Parent=Os04t0654600-01
Chr04	irgsp1_rep	CDS	33386950	33387133	.	+	0	Parent=Os04t0654600-01
Chr04	irgsp1_rep	CDS	33387202	33387617	.	+	2	Parent=Os04t0654600-01
Chr04	irgsp1_rep	CDS	33387700	33387779	.	+	0	Parent=Os04t0654600-01
Chr04	irgsp1_rep	CDS	33387870	33388005	.	+	1	Parent=Os04t0654600-01
Chr04	irgsp1_rep	CDS	33388144	33388296	.	+	0	Parent=Os04t0654600-01
Chr04	irgsp1_rep	CDS	33391273	33391479	.	+	0	Parent=Os04t0654600-01
Chr04	irgsp1_rep	three_prime_UTR	33391480	33391644	.	+	.	Parent=Os04t0654600-01
Chr04	irgsp1_rep	mRNA	33394485	33397945	.	+	.	ID=Os04t0654700-01;Name=Os04t0654700-01;Locus_id=Os04g0654700;RAP-DB Gene Symbol Synonym(s)=OsCSN5A;RAP-DB Gene Name Synonym(s)=COP9 signalosome complex subunit 5a;Oryzabase Gene Symbol Synonym(s)=Osjab1%2C jab1%2C CSN5%2C OsCSN5%2C OsCSN5A CSN5A;Oryzabase Gene Name Synonym(s)=JAB1 Transcriptional Coactivator%2C COP9 signalosome subunit 5%2C COP9 signalosome complex subunit 5a;Note=COP9 signalosome complex subunit 5a%2C Interaction with RBSDV (rice black-streaked dwarf virus)-encoded P5-1%2C Promotion of RBSDV infection;Transcript_evidence=AK062107;ORF_evidence=Q8H936;GO=Molecular Function: protein binding (GO:0005515);InterPro=MPN domain (IPR037518),JAB1/MPN/MOV34 metalloenzyme domain (IPR000555),Cop9 signalosome subunit 5 C-terminal domain (IPR040961);NIAS_FLcDNA=001-045-B03;Manual Curation=September 19%2C 2019;Literature_PMID=31318448;Oryzabase=15700;Expression=AK062107;TENOR=Os04t0654700-01;KEGG=Os04t0654700-01 (EC:3.4.-.-)
Chr04	irgsp1_rep	five_prime_UTR	33394485	33394603	.	+	.	Parent=Os04t0654700-01
Chr04	irgsp1_rep	CDS	33394604	33394996	.	+	0	Parent=Os04t0654700-01
Chr04	irgsp1_rep	CDS	33395798	33396079	.	+	0	Parent=Os04t0654700-01
Chr04	irgsp1_rep	CDS	33396159	33396306	.	+	0	Parent=Os04t0654700-01
Chr04	irgsp1_rep	CDS	33396410	33396489	.	+	2	Parent=Os04t0654700-01
Chr04	irgsp1_rep	CDS	33397339	33397419	.	+	0	Parent=Os04t0654700-01
Chr04	irgsp1_rep	CDS	33397517	33397615	.	+	0	Parent=Os04t0654700-01
Chr04	irgsp1_rep	three_prime_UTR	33397616	33397945	.	+	.	Parent=Os04t0654700-01
Chr04	irgsp1_rep	mRNA	33394508	33397972	.	+	.	ID=Os04t0654700-02;Name=Os04t0654700-02;Locus_id=Os04g0654700;Oryzabase Gene Symbol Synonym(s)=Osjab1%2C jab1%2C CSN5%2C OsCSN5%2C OsCSN5A CSN5A;Oryzabase Gene Name Synonym(s)=JAB1 Transcriptional Coactivator%2C COP9 signalosome subunit 5%2C COP9 signalosome complex subunit 5a;Note=Similar to COP9 signalosome complex subunit 5b (EC 3.4.-.-) (Signalosome subunit 5b) (Jun activation domain-binding homolog 1).;Transcript_evidence=AK099088 (DDBJ%2C Best hit);ORF_evidence=Q7GC30 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Mov34/MPN/PAD-1 (IPR000555);NIAS_FLcDNA=J023007N04;Oryzabase=15700;Expression=AK099088;TENOR=Os04t0654700-02;KEGG=Os04t0654700-02 (EC:3.4.-.-)
Chr04	irgsp1_rep	five_prime_UTR	33394508	33394603	.	+	.	Parent=Os04t0654700-02
Chr04	irgsp1_rep	CDS	33394604	33394996	.	+	0	Parent=Os04t0654700-02
Chr04	irgsp1_rep	CDS	33395798	33396079	.	+	0	Parent=Os04t0654700-02
Chr04	irgsp1_rep	CDS	33396159	33396306	.	+	0	Parent=Os04t0654700-02
Chr04	irgsp1_rep	CDS	33396410	33396489	.	+	2	Parent=Os04t0654700-02
Chr04	irgsp1_rep	CDS	33397339	33397419	.	+	0	Parent=Os04t0654700-02
Chr04	irgsp1_rep	CDS	33397517	33397615	.	+	0	Parent=Os04t0654700-02
Chr04	irgsp1_rep	three_prime_UTR	33397616	33397972	.	+	.	Parent=Os04t0654700-02
Chr04	irgsp1_rep	mRNA	33399564	33402242	.	-	.	ID=Os04t0654800-00;Name=Os04t0654800-00;Locus_id=Os04g0654800;Note=Similar to OSIGBa0147J19.7 protein.;Transcript_evidence=BT039417 (DDBJ);ORF_evidence=Q01KM2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os04t0654800-00;KEGG=Os04t0654800-00
Chr04	irgsp1_rep	CDS	33399564	33402242	.	-	0	Parent=Os04t0654800-00
Chr04	irgsp1_rep	mRNA	33407358	33409844	.	+	.	ID=Os04t0655000-00;Name=Os04t0655000-00;Locus_id=Os04g0655000;Note=Curculin-like (mannose-binding) lectin domain containing protein.;Transcript_evidence=AK367962 (DDBJ);ORF_evidence=Q01KM2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),PAN-1 domain (IPR003014),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os04t0655000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	33407358	33409805	.	+	0	Parent=Os04t0655000-00
Chr04	irgsp1_rep	three_prime_UTR	33409806	33409844	.	+	.	Parent=Os04t0655000-00
Chr04	irgsp1_rep	mRNA	33415316	33415634	.	-	.	ID=Os04t0655100-01;Name=Os04t0655100-01;Locus_id=Os04g0655100;Note=Non-protein coding transcript.;Transcript_evidence=AK058770 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-001-G05;TENOR=Os04t0655100-01
Chr04	irgsp1_rep	exon	33415316	33415634	.	-	.	Parent=Os04t0655100-01
Chr04	irgsp1_rep	mRNA	33418637	33421199	.	+	.	ID=Os04t0655300-01;Name=Os04t0655300-01;Locus_id=Os04g0655300;CGSNL Gene Symbol=RLCK168;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 168;Oryzabase Gene Symbol Synonym(s)=OsRLCK168;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 168;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK103700 (DDBJ%2C Best hit);ORF_evidence=Q01KM0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033136L05;Oryzabase=18871;Expression=AK103700;TENOR=Os04t0655300-01;KEGG=Os04t0655300-01
Chr04	irgsp1_rep	five_prime_UTR	33418637	33419752	.	+	.	Parent=Os04t0655300-01
Chr04	irgsp1_rep	CDS	33419753	33420988	.	+	0	Parent=Os04t0655300-01
Chr04	irgsp1_rep	three_prime_UTR	33420989	33421199	.	+	.	Parent=Os04t0655300-01
Chr04	irgsp1_rep	mRNA	33421535	33422584	.	-	.	ID=Os04t0655400-01;Name=Os04t0655400-01;Locus_id=Os04g0655400;CGSNL Gene Symbol=RLCK169;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 169;Oryzabase Gene Symbol Synonym(s)=OsRLCK169;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 169;Note=Similar to OSIGBa0147J19.10 protein.;Transcript_evidence=AK109273 (DDBJ%2C Best hit);ORF_evidence=Q01KL9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-188-A09;Oryzabase=18872;TENOR=Os04t0655400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33422489	33422584	.	-	.	Parent=Os04t0655400-01
Chr04	irgsp1_rep	CDS	33421919	33422488	.	-	0	Parent=Os04t0655400-01
Chr04	irgsp1_rep	three_prime_UTR	33421535	33421918	.	-	.	Parent=Os04t0655400-01
Chr04	irgsp1_rep	mRNA	33429129	33436181	.	+	.	ID=Os04t0655600-01;Name=Os04t0655600-01;Locus_id=Os04g0655600;Note=Similar to OSIGBa0147J19.13 protein.;Transcript_evidence=AK101011 (DDBJ%2C Best hit);ORF_evidence=Q01KL2 (UniProt);NIAS_FLcDNA=J023148O14;Expression=AK101011;TENOR=Os04t0655600-01;KEGG=Os04t0655600-01
Chr04	irgsp1_rep	five_prime_UTR	33429129	33429139	.	+	.	Parent=Os04t0655600-01
Chr04	irgsp1_rep	CDS	33429140	33429431	.	+	0	Parent=Os04t0655600-01
Chr04	irgsp1_rep	CDS	33430471	33430561	.	+	2	Parent=Os04t0655600-01
Chr04	irgsp1_rep	CDS	33431400	33431757	.	+	1	Parent=Os04t0655600-01
Chr04	irgsp1_rep	CDS	33431872	33432045	.	+	0	Parent=Os04t0655600-01
Chr04	irgsp1_rep	CDS	33432504	33432708	.	+	0	Parent=Os04t0655600-01
Chr04	irgsp1_rep	CDS	33432818	33432885	.	+	2	Parent=Os04t0655600-01
Chr04	irgsp1_rep	CDS	33433380	33433461	.	+	0	Parent=Os04t0655600-01
Chr04	irgsp1_rep	CDS	33433614	33433650	.	+	2	Parent=Os04t0655600-01
Chr04	irgsp1_rep	CDS	33433923	33434014	.	+	1	Parent=Os04t0655600-01
Chr04	irgsp1_rep	CDS	33435320	33435395	.	+	2	Parent=Os04t0655600-01
Chr04	irgsp1_rep	CDS	33435503	33435761	.	+	1	Parent=Os04t0655600-01
Chr04	irgsp1_rep	three_prime_UTR	33435762	33436181	.	+	.	Parent=Os04t0655600-01
Chr04	irgsp1_rep	mRNA	33437188	33437749	.	-	.	ID=Os04t0655700-00;Name=Os04t0655700-00;Locus_id=Os04g0655700;CGSNL Gene Symbol=ERF129;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 129;Oryzabase Gene Symbol Synonym(s)=OsERF#129%2C OsERF129%2C AP2/EREBP#045%2C AP2/EREBP45;Oryzabase Gene Name Synonym(s)=ethylene response factor 129%2C APETALA2/ethylene-responsive element binding protein 45;Note=Similar to OSIGBa0147J19.14 protein.;Transcript_evidence=AK357202 (DDBJ);ORF_evidence=Q01KL1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);Oryzabase=10622;TENOR=Os04t0655700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33437650	33437749	.	-	.	Parent=Os04t0655700-00
Chr04	irgsp1_rep	CDS	33437188	33437649	.	-	0	Parent=Os04t0655700-00
Chr04	irgsp1_rep	mRNA	33457745	33464852	.	+	.	ID=Os04t0656100-01;Name=Os04t0656100-01;Locus_id=Os04g0656100;RAP-DB Gene Symbol Synonym(s)=AHA7%2C OSA7%2C OsA7%2C osAHA7%2C AHA7%2C PAA-Hwa;RAP-DB Gene Name Synonym(s)=H+-ATPASE 7%2C plasma membrane H+-ATPase 7%2C PM H+-ATPase 7%2C plasma membrane H+ P-Type ATPase 7%2C panicle apical abortion-h;CGSNL Gene Symbol=AHA7;CGSNL Gene Name=H+-ATPASE 7;Oryzabase Gene Symbol Synonym(s)=OSA7%2C OsA7%2C osAHA7%2C AHA7%2C PAA-Hwa;Oryzabase Gene Name Synonym(s)=plasma membrane H+-ATPase 7%2C PM H+-ATPase 7%2C plasma membrane H+ P-Type ATPase 7%2C panicle apical abortion-h;Note=H+-ATPase%2C Blue light-induced stomatal opening of dumbbell-shaped guard cells%2C N uptake;Transcript_evidence=AK100435;ORF_evidence=Q7XPY2;GO=Biological Process: ATP biosynthetic process (GO:0006754),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATPase activity (GO:0016887),Molecular Function: metal ion binding (GO:0046872),Cellular Component: integral component of membrane (GO:0016021);InterPro=P-type ATPase (IPR001757),P-type ATPase%2C subfamily IIIA (IPR006534),Cation-transporting P-type ATPase%2C N-terminal (IPR004014),P-type ATPase%2C A  domain (IPR008250),P-type ATPase%2C  transmembrane domain (IPR023298),HAD-like domain (IPR023214),P-type ATPase%2C cytoplasmic domain N (IPR023299),P-type ATPase%2C phosphorylation site (IPR018303);NIAS_FLcDNA=J023088J16;Manual Curation=June 21%2C 2016;Literature_PMID=27048369,21421368;Oryzabase=11189;TENOR=Os04t0656100-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33457745	33458049	.	+	.	Parent=Os04t0656100-01
Chr04	irgsp1_rep	CDS	33458050	33458091	.	+	0	Parent=Os04t0656100-01
Chr04	irgsp1_rep	CDS	33459707	33459826	.	+	0	Parent=Os04t0656100-01
Chr04	irgsp1_rep	CDS	33459943	33460179	.	+	0	Parent=Os04t0656100-01
Chr04	irgsp1_rep	CDS	33460957	33461841	.	+	0	Parent=Os04t0656100-01
Chr04	irgsp1_rep	CDS	33461937	33462041	.	+	0	Parent=Os04t0656100-01
Chr04	irgsp1_rep	CDS	33462124	33462268	.	+	0	Parent=Os04t0656100-01
Chr04	irgsp1_rep	CDS	33462350	33462514	.	+	2	Parent=Os04t0656100-01
Chr04	irgsp1_rep	CDS	33462595	33462833	.	+	2	Parent=Os04t0656100-01
Chr04	irgsp1_rep	CDS	33462928	33462960	.	+	0	Parent=Os04t0656100-01
Chr04	irgsp1_rep	CDS	33463044	33463125	.	+	0	Parent=Os04t0656100-01
Chr04	irgsp1_rep	CDS	33463221	33463381	.	+	2	Parent=Os04t0656100-01
Chr04	irgsp1_rep	CDS	33463486	33463659	.	+	0	Parent=Os04t0656100-01
Chr04	irgsp1_rep	CDS	33463753	33463935	.	+	0	Parent=Os04t0656100-01
Chr04	irgsp1_rep	CDS	33464036	33464223	.	+	0	Parent=Os04t0656100-01
Chr04	irgsp1_rep	CDS	33464359	33464455	.	+	1	Parent=Os04t0656100-01
Chr04	irgsp1_rep	three_prime_UTR	33464456	33464852	.	+	.	Parent=Os04t0656100-01
Chr04	irgsp1_rep	mRNA	33461323	33464807	.	+	.	ID=Os04t0656100-03;Name=Os04t0656100-03;Locus_id=Os04g0656100;CGSNL Gene Symbol=AHA7;CGSNL Gene Name=H+-ATPASE 7;Oryzabase Gene Symbol Synonym(s)=OSA7%2C OsA7%2C osAHA7%2C AHA7%2C PAA-Hwa;Oryzabase Gene Name Synonym(s)=plasma membrane H+-ATPase 7%2C PM H+-ATPase 7%2C plasma membrane H+ P-Type ATPase 7%2C panicle apical abortion-h;Note=Similar to OSIGBa0158D24.1 protein.;Transcript_evidence=AK073066 (DDBJ%2C Best hit);ORF_evidence=Q01KM8 (UniProt);GO=Biological Process: ATP catabolic process (GO:0006200),Biological Process: ATP biosynthetic process (GO:0006754),Biological Process: cation transport (GO:0006812),Biological Process: metabolic process (GO:0008152),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662),Molecular Function: ATPase activity (GO:0016887),Molecular Function: metal ion binding (GO:0046872);InterPro=ATPase%2C P-type%2C H+ transporting proton pump (IPR000695),ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),Haloacid dehalogenase-like hydrolase (IPR005834),ATPase%2C P-type%2C plasma-membrane proton-efflux (IPR006534),ATPase%2C P-type%2C ATPase-associated domain (IPR008250),ATPase%2C P-type phosphorylation site (IPR018303),HAD-like domain (IPR023214),ATPase%2C P-type%2C  transmembrane domain (IPR023298),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299);NIAS_FLcDNA=J033023L01;Oryzabase=11189;TENOR=Os04t0656100-03;B5toI1=Exon-intron structures and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33461323	33461340	.	+	.	Parent=Os04t0656100-03
Chr04	irgsp1_rep	CDS	33461341	33461841	.	+	0	Parent=Os04t0656100-03
Chr04	irgsp1_rep	CDS	33461937	33462041	.	+	0	Parent=Os04t0656100-03
Chr04	irgsp1_rep	CDS	33462124	33462268	.	+	0	Parent=Os04t0656100-03
Chr04	irgsp1_rep	CDS	33462350	33462514	.	+	2	Parent=Os04t0656100-03
Chr04	irgsp1_rep	CDS	33462595	33462833	.	+	2	Parent=Os04t0656100-03
Chr04	irgsp1_rep	CDS	33462928	33462960	.	+	0	Parent=Os04t0656100-03
Chr04	irgsp1_rep	CDS	33463044	33463125	.	+	0	Parent=Os04t0656100-03
Chr04	irgsp1_rep	CDS	33463221	33463381	.	+	2	Parent=Os04t0656100-03
Chr04	irgsp1_rep	CDS	33463486	33463659	.	+	0	Parent=Os04t0656100-03
Chr04	irgsp1_rep	CDS	33463753	33463935	.	+	0	Parent=Os04t0656100-03
Chr04	irgsp1_rep	CDS	33464036	33464223	.	+	0	Parent=Os04t0656100-03
Chr04	irgsp1_rep	CDS	33464359	33464455	.	+	1	Parent=Os04t0656100-03
Chr04	irgsp1_rep	three_prime_UTR	33464456	33464807	.	+	.	Parent=Os04t0656100-03
Chr04	irgsp1_rep	mRNA	33461697	33464800	.	+	.	ID=Os04t0656100-04;Name=Os04t0656100-04;Locus_id=Os04g0656100;CGSNL Gene Symbol=AHA7;CGSNL Gene Name=H+-ATPASE 7;Oryzabase Gene Symbol Synonym(s)=OSA7%2C OsA7%2C osAHA7%2C AHA7%2C PAA-Hwa;Oryzabase Gene Name Synonym(s)=plasma membrane H+-ATPase 7%2C PM H+-ATPase 7%2C plasma membrane H+ P-Type ATPase 7%2C panicle apical abortion-h;Note=Similar to OSIGBa0158D24.1 protein.;Transcript_evidence=AK105082 (DDBJ%2C Best hit);ORF_evidence=Q01KM8 (UniProt);GO=Biological Process: ATP catabolic process (GO:0006200),Biological Process: ATP biosynthetic process (GO:0006754),Biological Process: cation transport (GO:0006812),Biological Process: metabolic process (GO:0008152),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662),Molecular Function: ATPase activity (GO:0016887);InterPro=ATPase%2C P-type%2C H+ transporting proton pump (IPR000695),ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),Haloacid dehalogenase-like hydrolase (IPR005834),ATPase%2C P-type%2C plasma-membrane proton-efflux (IPR006534),HAD-like domain (IPR023214),ATPase%2C P-type%2C  transmembrane domain (IPR023298),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299);NIAS_FLcDNA=001-046-C08;Oryzabase=11189;Expression=AK105082;TENOR=Os04t0656100-04;KEGG=Os04t0656100-04 (EC:3.6.3.6);B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33461697	33461697	.	+	.	Parent=Os04t0656100-04
Chr04	irgsp1_rep	CDS	33461698	33461841	.	+	0	Parent=Os04t0656100-04
Chr04	irgsp1_rep	CDS	33461937	33462041	.	+	0	Parent=Os04t0656100-04
Chr04	irgsp1_rep	CDS	33462124	33462268	.	+	0	Parent=Os04t0656100-04
Chr04	irgsp1_rep	CDS	33462350	33462514	.	+	2	Parent=Os04t0656100-04
Chr04	irgsp1_rep	CDS	33462595	33462833	.	+	2	Parent=Os04t0656100-04
Chr04	irgsp1_rep	CDS	33462928	33462960	.	+	0	Parent=Os04t0656100-04
Chr04	irgsp1_rep	CDS	33463044	33463125	.	+	0	Parent=Os04t0656100-04
Chr04	irgsp1_rep	CDS	33463221	33463381	.	+	2	Parent=Os04t0656100-04
Chr04	irgsp1_rep	CDS	33463486	33463659	.	+	0	Parent=Os04t0656100-04
Chr04	irgsp1_rep	CDS	33463753	33463935	.	+	0	Parent=Os04t0656100-04
Chr04	irgsp1_rep	CDS	33464036	33464223	.	+	0	Parent=Os04t0656100-04
Chr04	irgsp1_rep	CDS	33464359	33464455	.	+	1	Parent=Os04t0656100-04
Chr04	irgsp1_rep	three_prime_UTR	33464456	33464800	.	+	.	Parent=Os04t0656100-04
Chr04	irgsp1_rep	mRNA	33488722	33492700	.	+	.	ID=Os04t0656500-01;Name=Os04t0656500-01;Locus_id=Os04g0656500;RAP-DB Gene Symbol Synonym(s)=OsLG1%2C OsSPL8;RAP-DB Gene Name Synonym(s)=LIGULELESS 1%2C OsLIGULELESS1%2C Squamosa promoter-binding-like protein 8;CGSNL Gene Symbol=LG1;CGSNL Gene Name=LIGULELESS 1;Oryzabase Gene Symbol Synonym(s)=SPL8%2C OsSPL8%2C OsLG1;Oryzabase Gene Name Synonym(s)=Squamosa promoter-binding-like protein 8%2C Protein LIGULELESS 1%2C OsLIGULELESS1;Note=Transcriptional factor%2C SBP (SQUAMOSA promoter Binding Protein) DNA binding protein%2C Control of laminar joint and ligule development;Transcript_evidence=AK068104,AB776991;ORF_evidence=Q7XPY1;GO=Molecular Function: DNA binding (GO:0003677),Cellular Component: nucleus (GO:0005634);InterPro=SBP domain superfamily (IPR036893),SBP domain (IPR004333);NIAS_FLcDNA=J013129G14;Manual Curation=February 26%2C 2018;Literature_PMID=23435087,17594063;Oryzabase=6891;Expression=AK068104;TENOR=Os04t0656500-01;KEGG=Os04t0656500-01;Subcellular location=nucleus (GO:0005634)
Chr04	irgsp1_rep	five_prime_UTR	33488722	33489000	.	+	.	Parent=Os04t0656500-01
Chr04	irgsp1_rep	CDS	33489001	33489695	.	+	0	Parent=Os04t0656500-01
Chr04	irgsp1_rep	CDS	33491669	33491826	.	+	1	Parent=Os04t0656500-01
Chr04	irgsp1_rep	CDS	33492044	33492441	.	+	2	Parent=Os04t0656500-01
Chr04	irgsp1_rep	three_prime_UTR	33492442	33492700	.	+	.	Parent=Os04t0656500-01
Chr04	irgsp1_rep	mRNA	33500008	33506112	.	-	.	ID=Os04t0656800-01;Name=Os04t0656800-01;Locus_id=Os04g0656800;Oryzabase Gene Symbol Synonym(s)=prx58;Oryzabase Gene Name Synonym(s)=class III peroxidase 58;Note=Similar to Peroxidase precursor (EC 1.11.1.7).;Transcript_evidence=AK058886 (DDBJ%2C Best hit);ORF_evidence=Q01KM6 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=001-007-C06;Oryzabase=14583;Expression=AK058886;TENOR=Os04t0656800-01;KEGG=Os04t0656800-01 (EC:1.11.1.7);B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33506016	33506112	.	-	.	Parent=Os04t0656800-01
Chr04	irgsp1_rep	CDS	33505973	33506015	.	-	0	Parent=Os04t0656800-01
Chr04	irgsp1_rep	CDS	33505773	33505957	.	-	2	Parent=Os04t0656800-01
Chr04	irgsp1_rep	CDS	33505504	33505701	.	-	0	Parent=Os04t0656800-01
Chr04	irgsp1_rep	CDS	33503902	33504067	.	-	0	Parent=Os04t0656800-01
Chr04	irgsp1_rep	CDS	33500227	33500633	.	-	2	Parent=Os04t0656800-01
Chr04	irgsp1_rep	three_prime_UTR	33500008	33500226	.	-	.	Parent=Os04t0656800-01
Chr04	irgsp1_rep	mRNA	33506976	33516457	.	-	.	ID=Os04t0657000-00;Name=Os04t0657000-00;Locus_id=Os04g0657000;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XPX8 (UniProt);TENOR=Os04t0657000-00;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	33516371	33516457	.	-	0	Parent=Os04t0657000-00
Chr04	irgsp1_rep	CDS	33516011	33516086	.	-	0	Parent=Os04t0657000-00
Chr04	irgsp1_rep	CDS	33507869	33507955	.	-	2	Parent=Os04t0657000-00
Chr04	irgsp1_rep	CDS	33506976	33507232	.	-	2	Parent=Os04t0657000-00
Chr04	irgsp1_rep	mRNA	33517229	33520052	.	-	.	ID=Os04t0657100-01;Name=Os04t0657100-01;Locus_id=Os04g0657100;Oryzabase Gene Symbol Synonym(s)=OsFPPS3;Oryzabase Gene Name Synonym(s)=farnesyl diphosphate synthase 3;Note=Similar to Farnesyl diphosphate synthase (Fragment).;Transcript_evidence=AK072747 (DDBJ%2C Best hit);ORF_evidence=Q01KM5 (UniProt);GO=Biological Process: isoprenoid biosynthetic process (GO:0008299);InterPro=Polyprenyl synthetase (IPR000092),Terpenoid synthase (IPR008949);NIAS_FLcDNA=J023137P20;Oryzabase=11200;Expression=AK072747;TENOR=Os04t0657100-01;KEGG=Os04t0657100-01 (EC:2.5.1.1%2C EC:2.5.1.10)
Chr04	irgsp1_rep	five_prime_UTR	33519969	33520052	.	-	.	Parent=Os04t0657100-01
Chr04	irgsp1_rep	CDS	33519708	33519968	.	-	0	Parent=Os04t0657100-01
Chr04	irgsp1_rep	CDS	33519533	33519557	.	-	0	Parent=Os04t0657100-01
Chr04	irgsp1_rep	CDS	33519199	33519314	.	-	2	Parent=Os04t0657100-01
Chr04	irgsp1_rep	CDS	33519006	33519092	.	-	0	Parent=Os04t0657100-01
Chr04	irgsp1_rep	CDS	33518795	33518911	.	-	0	Parent=Os04t0657100-01
Chr04	irgsp1_rep	CDS	33518617	33518705	.	-	0	Parent=Os04t0657100-01
Chr04	irgsp1_rep	CDS	33518450	33518501	.	-	1	Parent=Os04t0657100-01
Chr04	irgsp1_rep	CDS	33517990	33518085	.	-	0	Parent=Os04t0657100-01
Chr04	irgsp1_rep	CDS	33517876	33517920	.	-	0	Parent=Os04t0657100-01
Chr04	irgsp1_rep	CDS	33517713	33517802	.	-	0	Parent=Os04t0657100-01
Chr04	irgsp1_rep	CDS	33517567	33517638	.	-	0	Parent=Os04t0657100-01
Chr04	irgsp1_rep	CDS	33517332	33517460	.	-	0	Parent=Os04t0657100-01
Chr04	irgsp1_rep	three_prime_UTR	33517229	33517331	.	-	.	Parent=Os04t0657100-01
Chr04	irgsp1_rep	mRNA	33524754	33525163	.	-	.	ID=Os04t0657300-00;Name=Os04t0657300-00;Locus_id=Os04g0657300;Note=Conserved hypothetical protein.;Transcript_evidence=CT835061 (DDBJ%2C Best hit);ORF_evidence=NP_001054122.1 (RefSeq);TENOR=Os04t0657300-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33525163	33525163	.	-	.	Parent=Os04t0657300-00
Chr04	irgsp1_rep	CDS	33525100	33525162	.	-	0	Parent=Os04t0657300-00
Chr04	irgsp1_rep	three_prime_UTR	33524754	33525099	.	-	.	Parent=Os04t0657300-00
Chr04	irgsp1_rep	mRNA	33530289	33533734	.	+	.	ID=Os04t0657500-01;Name=Os04t0657500-01;Locus_id=Os04g0657500;Note=Lipase%2C class 3 family protein.;Transcript_evidence=AK066638 (DDBJ%2C Best hit);ORF_evidence=A2XYG7 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921);NIAS_FLcDNA=J013074N08;Expression=AK066638;TENOR=Os04t0657500-01;KEGG=Os04t0657500-01
Chr04	irgsp1_rep	five_prime_UTR	33530289	33530357	.	+	.	Parent=Os04t0657500-01
Chr04	irgsp1_rep	CDS	33530358	33530640	.	+	0	Parent=Os04t0657500-01
Chr04	irgsp1_rep	CDS	33530706	33530933	.	+	2	Parent=Os04t0657500-01
Chr04	irgsp1_rep	CDS	33531039	33531658	.	+	2	Parent=Os04t0657500-01
Chr04	irgsp1_rep	CDS	33533143	33533400	.	+	0	Parent=Os04t0657500-01
Chr04	irgsp1_rep	three_prime_UTR	33533401	33533734	.	+	.	Parent=Os04t0657500-01
Chr04	irgsp1_rep	mRNA	33534392	33535684	.	-	.	ID=Os04t0657600-01;Name=Os04t0657600-01;Locus_id=Os04g0657600;Oryzabase Gene Symbol Synonym(s)=OsFbox235%2C Os_F0248;Oryzabase Gene Name Synonym(s)=F-box protein 235;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK119428 (DDBJ%2C Best hit);ORF_evidence=A2XYG8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=001-132-H12;Oryzabase=17021;Expression=AK119428;TENOR=Os04t0657600-01;KEGG=Os04t0657600-01
Chr04	irgsp1_rep	five_prime_UTR	33535621	33535684	.	-	.	Parent=Os04t0657600-01
Chr04	irgsp1_rep	CDS	33534463	33535620	.	-	0	Parent=Os04t0657600-01
Chr04	irgsp1_rep	three_prime_UTR	33534392	33534462	.	-	.	Parent=Os04t0657600-01
Chr04	irgsp1_rep	mRNA	33554837	33555369	.	+	.	ID=Os04t0657900-01;Name=Os04t0657900-01;Locus_id=Os04g0657900;Note=Similar to Fortune-1.;Transcript_evidence=AK059216 (DDBJ%2C Best hit);ORF_evidence=Q8VZY5 (UniProt);NIAS_FLcDNA=001-024-C08;Expression=AK059216;TENOR=Os04t0657900-01;KEGG=Os04t0657900-01
Chr04	irgsp1_rep	CDS	33554837	33554935	.	+	0	Parent=Os04t0657900-01
Chr04	irgsp1_rep	CDS	33555034	33555138	.	+	0	Parent=Os04t0657900-01
Chr04	irgsp1_rep	three_prime_UTR	33555139	33555369	.	+	.	Parent=Os04t0657900-01
Chr04	irgsp1_rep	mRNA	33557486	33563976	.	+	.	ID=Os04t0658000-01;Name=Os04t0658000-01;Locus_id=Os04g0658000;Note=Similar to OSIGBa0132E09-OSIGBa0108L24.1 protein.;Transcript_evidence=AK068928 (DDBJ%2C Best hit);ORF_evidence=Q01HY8 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: isomerase activity (GO:0016853),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Aldose 1-epimerase (IPR008183),Glycoside hydrolase-type carbohydrate-binding (IPR011013),Glycoside hydrolase-type carbohydrate-binding%2C subgroup (IPR014718);NIAS_FLcDNA=J013170O13;Expression=AK068928;TENOR=Os04t0658000-01;KEGG=Os04t0658000-01
Chr04	irgsp1_rep	five_prime_UTR	33557486	33557775	.	+	.	Parent=Os04t0658000-01
Chr04	irgsp1_rep	CDS	33557776	33557934	.	+	0	Parent=Os04t0658000-01
Chr04	irgsp1_rep	CDS	33560233	33560307	.	+	0	Parent=Os04t0658000-01
Chr04	irgsp1_rep	CDS	33560693	33560815	.	+	0	Parent=Os04t0658000-01
Chr04	irgsp1_rep	three_prime_UTR	33560816	33561840	.	+	.	Parent=Os04t0658000-01
Chr04	irgsp1_rep	three_prime_UTR	33561951	33563976	.	+	.	Parent=Os04t0658000-01
Chr04	irgsp1_rep	mRNA	33557556	33563672	.	+	.	ID=Os04t0658000-02;Name=Os04t0658000-02;Locus_id=Os04g0658000;Note=Similar to Possible apospory-associated like protein.;Transcript_evidence=AK071255 (DDBJ%2C Best hit);ORF_evidence=Q01HY8 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: isomerase activity (GO:0016853),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Aldose 1-epimerase (IPR008183),Glycoside hydrolase-type carbohydrate-binding (IPR011013),Glycoside hydrolase-type carbohydrate-binding%2C subgroup (IPR014718);NIAS_FLcDNA=J023086C22;Expression=AK071255;TENOR=Os04t0658000-02;KEGG=Os04t0658000-02
Chr04	irgsp1_rep	five_prime_UTR	33557556	33557775	.	+	.	Parent=Os04t0658000-02
Chr04	irgsp1_rep	CDS	33557776	33557934	.	+	0	Parent=Os04t0658000-02
Chr04	irgsp1_rep	CDS	33560233	33560307	.	+	0	Parent=Os04t0658000-02
Chr04	irgsp1_rep	CDS	33560693	33560749	.	+	0	Parent=Os04t0658000-02
Chr04	irgsp1_rep	CDS	33560841	33561001	.	+	0	Parent=Os04t0658000-02
Chr04	irgsp1_rep	CDS	33561160	33561300	.	+	1	Parent=Os04t0658000-02
Chr04	irgsp1_rep	CDS	33561550	33561652	.	+	1	Parent=Os04t0658000-02
Chr04	irgsp1_rep	CDS	33561741	33561840	.	+	0	Parent=Os04t0658000-02
Chr04	irgsp1_rep	CDS	33561951	33562189	.	+	2	Parent=Os04t0658000-02
Chr04	irgsp1_rep	three_prime_UTR	33562190	33562211	.	+	.	Parent=Os04t0658000-02
Chr04	irgsp1_rep	three_prime_UTR	33563292	33563672	.	+	.	Parent=Os04t0658000-02
Chr04	irgsp1_rep	mRNA	33565812	33568359	.	+	.	ID=Os04t0658100-01;Name=Os04t0658100-01;Locus_id=Os04g0658100;Note=Histone-fold domain containing protein.;Transcript_evidence=AK065495 (DDBJ%2C Best hit);ORF_evidence=Q01HY7 (UniProt);GO=Cellular Component: SAGA-type complex (GO:0070461);InterPro=Transcriptional coactivator SAGA-type complex%2C Ada1/Tada1 (IPR024738);NIAS_FLcDNA=J013021B22;Expression=AK065495;TENOR=Os04t0658100-01;KEGG=Os04t0658100-01
Chr04	irgsp1_rep	five_prime_UTR	33565812	33566481	.	+	.	Parent=Os04t0658100-01
Chr04	irgsp1_rep	CDS	33566482	33567768	.	+	0	Parent=Os04t0658100-01
Chr04	irgsp1_rep	three_prime_UTR	33567769	33568359	.	+	.	Parent=Os04t0658100-01
Chr04	irgsp1_rep	mRNA	33569744	33573676	.	-	.	ID=Os04t0658200-01;Name=Os04t0658200-01;Locus_id=Os04g0658200;Note=Similar to OSIGBa0132E09-OSIGBa0108L24.3 protein.;Transcript_evidence=AK241899 (DDBJ%2C Best hit);ORF_evidence=Q01HZ6 (UniProt);NIAS_FLcDNA=J075021C22;TENOR=Os04t0658200-01;KEGG=Os04t0658200-01
Chr04	irgsp1_rep	five_prime_UTR	33573554	33573676	.	-	.	Parent=Os04t0658200-01
Chr04	irgsp1_rep	CDS	33573466	33573553	.	-	0	Parent=Os04t0658200-01
Chr04	irgsp1_rep	CDS	33569963	33570153	.	-	2	Parent=Os04t0658200-01
Chr04	irgsp1_rep	three_prime_UTR	33569744	33569962	.	-	.	Parent=Os04t0658200-01
Chr04	irgsp1_rep	mRNA	33575152	33579653	.	-	.	ID=Os04t0658300-01;Name=Os04t0658300-01;Locus_id=Os04g0658300;Oryzabase Gene Name Synonym(s)=Rubisco activase;Note=Similar to Ribulose bisphosphate carboxylase/oxygenase activase%2C chloroplast precursor (RuBisCO activase) (RA).;Transcript_evidence=AK067399 (DDBJ%2C Best hit);ORF_evidence=Q01HZ5 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=ATPase%2C AAA-type%2C core (IPR003959);NIAS_FLcDNA=J013106M01;Oryzabase=12450;Expression=AK067399;TENOR=Os04t0658300-01;KEGG=Os04t0658300-01
Chr04	irgsp1_rep	five_prime_UTR	33579584	33579653	.	-	.	Parent=Os04t0658300-01
Chr04	irgsp1_rep	CDS	33579214	33579583	.	-	0	Parent=Os04t0658300-01
Chr04	irgsp1_rep	CDS	33578956	33579041	.	-	2	Parent=Os04t0658300-01
Chr04	irgsp1_rep	CDS	33578824	33578833	.	-	0	Parent=Os04t0658300-01
Chr04	irgsp1_rep	CDS	33578314	33578376	.	-	2	Parent=Os04t0658300-01
Chr04	irgsp1_rep	CDS	33578081	33578194	.	-	2	Parent=Os04t0658300-01
Chr04	irgsp1_rep	CDS	33577870	33577931	.	-	2	Parent=Os04t0658300-01
Chr04	irgsp1_rep	CDS	33577274	33577328	.	-	0	Parent=Os04t0658300-01
Chr04	irgsp1_rep	CDS	33576811	33577012	.	-	2	Parent=Os04t0658300-01
Chr04	irgsp1_rep	CDS	33576568	33576674	.	-	1	Parent=Os04t0658300-01
Chr04	irgsp1_rep	CDS	33576206	33576261	.	-	2	Parent=Os04t0658300-01
Chr04	irgsp1_rep	CDS	33575777	33575869	.	-	0	Parent=Os04t0658300-01
Chr04	irgsp1_rep	CDS	33575448	33575555	.	-	0	Parent=Os04t0658300-01
Chr04	irgsp1_rep	three_prime_UTR	33575152	33575447	.	-	.	Parent=Os04t0658300-01
Chr04	irgsp1_rep	mRNA	33580362	33582331	.	+	.	ID=Os04t0658400-00;Name=Os04t0658400-00;Locus_id=Os04g0658400;CGSNL Gene Symbol=ABCF3;CGSNL Gene Name=ABC TRANSPORTER F FAMILY MEMBER 3;Oryzabase Gene Symbol Synonym(s)=OsABCF3;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCF subgroup member 3;Note=Hypothetical conserved gene.;Transcript_evidence=AK363453 (DDBJ);ORF_evidence=Q7XN84 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C conserved site (IPR017871);Oryzabase=11977;TENOR=Os04t0658400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33580362	33580438	.	+	.	Parent=Os04t0658400-00
Chr04	irgsp1_rep	CDS	33580439	33581881	.	+	0	Parent=Os04t0658400-00
Chr04	irgsp1_rep	three_prime_UTR	33581882	33582331	.	+	.	Parent=Os04t0658400-00
Chr04	irgsp1_rep	mRNA	33590694	33591841	.	-	.	ID=Os04t0658600-01;Name=Os04t0658600-01;Locus_id=Os04g0658600;Note=Similar to OSIGBa0132E09-OSIGBa0108L24.7 protein.;Transcript_evidence=AK064729 (DDBJ%2C Best hit);ORF_evidence=Q01HZ2 (UniProt);GO=Biological Process: rRNA processing (GO:0006364),Cellular Component: preribosome%2C small subunit precursor (GO:0030688);InterPro=Nucleolar%2C Nop52 (IPR010301);NIAS_FLcDNA=002-120-A11;Expression=AK064729;TENOR=Os04t0658600-01;KEGG=Os04t0658600-01
Chr04	irgsp1_rep	five_prime_UTR	33591777	33591841	.	-	.	Parent=Os04t0658600-01
Chr04	irgsp1_rep	CDS	33590694	33591776	.	-	0	Parent=Os04t0658600-01
Chr04	irgsp1_rep	mRNA	33589945	33591754	.	-	.	ID=Os04t0658600-02;Name=Os04t0658600-02;Locus_id=Os04g0658600;Note=Nucleolar%2C Nop52 family protein.;Transcript_evidence=AK119253 (DDBJ%2C Best hit);ORF_evidence=Q01HZ2 (UniProt);GO=Biological Process: rRNA processing (GO:0006364),Cellular Component: preribosome%2C small subunit precursor (GO:0030688);InterPro=Nucleolar%2C Nop52 (IPR010301);NIAS_FLcDNA=001-123-G09;Expression=AK119253;TENOR=Os04t0658600-02;KEGG=Os04t0658600-02
Chr04	irgsp1_rep	five_prime_UTR	33591753	33591754	.	-	.	Parent=Os04t0658600-02
Chr04	irgsp1_rep	CDS	33590100	33591752	.	-	0	Parent=Os04t0658600-02
Chr04	irgsp1_rep	three_prime_UTR	33589945	33590099	.	-	.	Parent=Os04t0658600-02
Chr04	irgsp1_rep	mRNA	33594301	33596091	.	+	.	ID=Os04t0658700-00;Name=Os04t0658700-00;Locus_id=Os04g0658700;CGSNL Gene Symbol=RLCK171;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 171;Oryzabase Gene Symbol Synonym(s)=OsRLCK171;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 171;Note=Similar to OSIGBa0132E09-OSIGBa0108L24.8 protein.;Transcript_evidence=BT085068 (DDBJ);ORF_evidence=Q01HZ1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009);Oryzabase=18874;TENOR=Os04t0658700-00;KEGG=Os04t0658700-00
Chr04	irgsp1_rep	five_prime_UTR	33594301	33594307	.	+	.	Parent=Os04t0658700-00
Chr04	irgsp1_rep	CDS	33594308	33594452	.	+	0	Parent=Os04t0658700-00
Chr04	irgsp1_rep	CDS	33594558	33594700	.	+	2	Parent=Os04t0658700-00
Chr04	irgsp1_rep	CDS	33594824	33595037	.	+	0	Parent=Os04t0658700-00
Chr04	irgsp1_rep	CDS	33595131	33595365	.	+	2	Parent=Os04t0658700-00
Chr04	irgsp1_rep	CDS	33595491	33595641	.	+	1	Parent=Os04t0658700-00
Chr04	irgsp1_rep	CDS	33595732	33596091	.	+	0	Parent=Os04t0658700-00
Chr04	irgsp1_rep	mRNA	33604376	33605201	.	-	.	ID=Os04t0658800-01;Name=Os04t0658800-01;Locus_id=Os04g0658800;Oryzabase Gene Symbol Synonym(s)=OsCLE404%2C CLE404;Oryzabase Gene Name Synonym(s)=CLV3/ESR-related 404%2C CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 404;Note=Similar to OSIGBa0132E09-OSIGBa0108L24.9 protein.;Transcript_evidence=AK111108 (DDBJ%2C Best hit);ORF_evidence=Q01HZ0 (UniProt);NIAS_FLcDNA=002-176-A04;Oryzabase=14237;Expression=AK111108;TENOR=Os04t0658800-01;KEGG=Os04t0658800-01
Chr04	irgsp1_rep	five_prime_UTR	33605050	33605201	.	-	.	Parent=Os04t0658800-01
Chr04	irgsp1_rep	CDS	33604780	33605049	.	-	0	Parent=Os04t0658800-01
Chr04	irgsp1_rep	three_prime_UTR	33604376	33604779	.	-	.	Parent=Os04t0658800-01
Chr04	irgsp1_rep	mRNA	33623137	33623920	.	+	.	ID=Os04t0659000-01;Name=Os04t0659000-01;Locus_id=Os04g0659000;Note=Similar to OSIGBa0132E09-OSIGBa0108L24.10 protein.;Transcript_evidence=AK063095 (DDBJ%2C Best hit);ORF_evidence=Q01HY9 (UniProt);NIAS_FLcDNA=001-111-B06;Expression=AK063095;TENOR=Os04t0659000-01;KEGG=Os04t0659000-01
Chr04	irgsp1_rep	five_prime_UTR	33623137	33623200	.	+	.	Parent=Os04t0659000-01
Chr04	irgsp1_rep	CDS	33623201	33623416	.	+	0	Parent=Os04t0659000-01
Chr04	irgsp1_rep	CDS	33623604	33623768	.	+	0	Parent=Os04t0659000-01
Chr04	irgsp1_rep	three_prime_UTR	33623769	33623920	.	+	.	Parent=Os04t0659000-01
Chr04	irgsp1_rep	mRNA	33624428	33631025	.	-	.	ID=Os04t0659100-01;Name=Os04t0659100-01;Locus_id=Os04g0659100;RAP-DB Gene Symbol Synonym(s)=OsGLN2%2C RGS31%2C OsGS2;RAP-DB Gene Name Synonym(s)=glutamine synthetase 2;CGSNL Gene Symbol=GS2;CGSNL Gene Name=GLUTAMINE SYNTHETASE 2;Oryzabase Gene Symbol Synonym(s)=OsGS2%2C GLN2%2C RGS31;Oryzabase Gene Name Synonym(s)="Glutamine synthetase%2C chloroplastic"%2C plastidic/chloroplastic glutamine synthase%2C glutamine synthetase 2%2C "Glutamate:ammonia ligase delta%2C chloroplast"%2C chloroplastic gluthamine synthetase 2;Note=Chloroplastic glutamine synthetase%2C Reassimilation of the ammonia generated by photorespiration%2C Salt tolerance;Transcript_evidence=AK065491,X14246;ORF_evidence=P14655;GO=Biological Process: glutamine biosynthetic process (GO:0006542),Biological Process: nitrogen compound metabolic process (GO:0006807),Molecular Function: catalytic activity (GO:0003824),Molecular Function: glutamate-ammonia ligase activity (GO:0004356);InterPro=Glutamine synthetase%2C N-terminal domain superfamily (IPR036651),Glutamine synthetase/guanido kinase%2C catalytic domain (IPR014746),Glutamine synthetase%2C beta-Grasp domain (IPR008147),Glutamine synthetase%2C catalytic domain (IPR008146),Glutamine synthetase%2C N-terminal conserved site (IPR027302),Glutamine synthetase%2C glycine-rich site (IPR027303);NIAS_FLcDNA=J013022E13;Manual Curation=December 1%2C 2017;Literature_PMID=15574840,10949377,2577497;Oryzabase=6056;Expression=AK065491;TENOR=Os04t0659100-01;KEGG=Os04t0659100-01 (EC:6.3.1.2)
Chr04	irgsp1_rep	five_prime_UTR	33630981	33631025	.	-	.	Parent=Os04t0659100-01
Chr04	irgsp1_rep	five_prime_UTR	33630858	33630893	.	-	.	Parent=Os04t0659100-01
Chr04	irgsp1_rep	CDS	33630616	33630857	.	-	0	Parent=Os04t0659100-01
Chr04	irgsp1_rep	CDS	33630148	33630187	.	-	1	Parent=Os04t0659100-01
Chr04	irgsp1_rep	CDS	33629864	33629967	.	-	0	Parent=Os04t0659100-01
Chr04	irgsp1_rep	CDS	33629720	33629768	.	-	1	Parent=Os04t0659100-01
Chr04	irgsp1_rep	CDS	33629473	33629579	.	-	0	Parent=Os04t0659100-01
Chr04	irgsp1_rep	CDS	33629272	33629359	.	-	1	Parent=Os04t0659100-01
Chr04	irgsp1_rep	CDS	33629028	33629156	.	-	0	Parent=Os04t0659100-01
Chr04	irgsp1_rep	CDS	33628837	33628911	.	-	0	Parent=Os04t0659100-01
Chr04	irgsp1_rep	CDS	33628444	33628497	.	-	0	Parent=Os04t0659100-01
Chr04	irgsp1_rep	CDS	33628327	33628364	.	-	0	Parent=Os04t0659100-01
Chr04	irgsp1_rep	CDS	33625404	33625563	.	-	1	Parent=Os04t0659100-01
Chr04	irgsp1_rep	CDS	33625263	33625323	.	-	0	Parent=Os04t0659100-01
Chr04	irgsp1_rep	CDS	33624737	33624876	.	-	2	Parent=Os04t0659100-01
Chr04	irgsp1_rep	three_prime_UTR	33624428	33624736	.	-	.	Parent=Os04t0659100-01
Chr04	irgsp1_rep	mRNA	33627909	33631025	.	-	.	ID=Os04t0659100-02;Name=Os04t0659100-02;Locus_id=Os04g0659100;CGSNL Gene Symbol=GS2;CGSNL Gene Name=GLUTAMINE SYNTHETASE 2;Oryzabase Gene Symbol Synonym(s)=OsGS2%2C GLN2%2C RGS31;Oryzabase Gene Name Synonym(s)="Glutamine synthetase%2C chloroplastic"%2C plastidic/chloroplastic glutamine synthase%2C glutamine synthetase 2%2C "Glutamate:ammonia ligase delta%2C chloroplast"%2C chloroplastic gluthamine synthetase 2;Note=Similar to Isoform 2 of Glutamine synthetase%2C chloroplastic.;Transcript_evidence=AK063706 (DDBJ%2C Best hit);ORF_evidence=P14655-2 (UniProt);GO=Biological Process: glutamine biosynthetic process (GO:0006542),Biological Process: nitrogen compound metabolic process (GO:0006807),Molecular Function: catalytic activity (GO:0003824),Molecular Function: glutamate-ammonia ligase activity (GO:0004356);InterPro=Glutamine synthetase%2C catalytic domain (IPR008146),Glutamine synthetase%2C beta-Grasp (IPR008147),Glutamine synthetase/guanido kinase%2C catalytic domain (IPR014746);NIAS_FLcDNA=001-119-H04;Oryzabase=6056;Expression=AK063706;TENOR=Os04t0659100-02;KEGG=Os04t0659100-02 (EC:6.3.1.2)
Chr04	irgsp1_rep	five_prime_UTR	33630981	33631025	.	-	.	Parent=Os04t0659100-02
Chr04	irgsp1_rep	five_prime_UTR	33630858	33630893	.	-	.	Parent=Os04t0659100-02
Chr04	irgsp1_rep	CDS	33630616	33630857	.	-	0	Parent=Os04t0659100-02
Chr04	irgsp1_rep	CDS	33630148	33630187	.	-	1	Parent=Os04t0659100-02
Chr04	irgsp1_rep	CDS	33629864	33629967	.	-	0	Parent=Os04t0659100-02
Chr04	irgsp1_rep	CDS	33629720	33629768	.	-	1	Parent=Os04t0659100-02
Chr04	irgsp1_rep	CDS	33629473	33629579	.	-	0	Parent=Os04t0659100-02
Chr04	irgsp1_rep	CDS	33629272	33629359	.	-	1	Parent=Os04t0659100-02
Chr04	irgsp1_rep	CDS	33629028	33629156	.	-	0	Parent=Os04t0659100-02
Chr04	irgsp1_rep	CDS	33628837	33628911	.	-	0	Parent=Os04t0659100-02
Chr04	irgsp1_rep	CDS	33628444	33628497	.	-	0	Parent=Os04t0659100-02
Chr04	irgsp1_rep	CDS	33628284	33628364	.	-	0	Parent=Os04t0659100-02
Chr04	irgsp1_rep	three_prime_UTR	33627909	33628283	.	-	.	Parent=Os04t0659100-02
Chr04	irgsp1_rep	mRNA	33624438	33630894	.	-	.	ID=Os04t0659100-03;Name=Os04t0659100-03;Locus_id=Os04g0659100;CGSNL Gene Symbol=GS2;CGSNL Gene Name=GLUTAMINE SYNTHETASE 2;Oryzabase Gene Symbol Synonym(s)=OsGS2%2C GLN2%2C RGS31;Oryzabase Gene Name Synonym(s)="Glutamine synthetase%2C chloroplastic"%2C plastidic/chloroplastic glutamine synthase%2C glutamine synthetase 2%2C "Glutamate:ammonia ligase delta%2C chloroplast"%2C chloroplastic gluthamine synthetase 2;Note=Glutamine synthetase shoot isozyme%2C chloroplast precursor (EC 6.3.1.2) (Glutamate--ammonia ligase) (Clone lambda-GS31).;Transcript_evidence=AK099252 (DDBJ%2C Best hit);ORF_evidence=Q01HZ7 (UniProt);GO=Biological Process: glutamine biosynthetic process (GO:0006542),Biological Process: nitrogen compound metabolic process (GO:0006807),Molecular Function: catalytic activity (GO:0003824),Molecular Function: glutamate-ammonia ligase activity (GO:0004356);InterPro=Glutamine synthetase%2C catalytic domain (IPR008146),Glutamine synthetase%2C beta-Grasp (IPR008147),Glutamine synthetase/guanido kinase%2C catalytic domain (IPR014746);NIAS_FLcDNA=J013156I04;Oryzabase=6056;Expression=AK099252;TENOR=Os04t0659100-03;KEGG=Os04t0659100-03 (EC:6.3.1.2)
Chr04	irgsp1_rep	five_prime_UTR	33630858	33630894	.	-	.	Parent=Os04t0659100-03
Chr04	irgsp1_rep	CDS	33630616	33630857	.	-	0	Parent=Os04t0659100-03
Chr04	irgsp1_rep	CDS	33630148	33630187	.	-	1	Parent=Os04t0659100-03
Chr04	irgsp1_rep	CDS	33629864	33629967	.	-	0	Parent=Os04t0659100-03
Chr04	irgsp1_rep	CDS	33629720	33629768	.	-	1	Parent=Os04t0659100-03
Chr04	irgsp1_rep	CDS	33629473	33629579	.	-	0	Parent=Os04t0659100-03
Chr04	irgsp1_rep	CDS	33629272	33629359	.	-	1	Parent=Os04t0659100-03
Chr04	irgsp1_rep	CDS	33629028	33629156	.	-	0	Parent=Os04t0659100-03
Chr04	irgsp1_rep	CDS	33628837	33628911	.	-	0	Parent=Os04t0659100-03
Chr04	irgsp1_rep	CDS	33628444	33628497	.	-	0	Parent=Os04t0659100-03
Chr04	irgsp1_rep	CDS	33628327	33628364	.	-	0	Parent=Os04t0659100-03
Chr04	irgsp1_rep	CDS	33625404	33625563	.	-	1	Parent=Os04t0659100-03
Chr04	irgsp1_rep	CDS	33625263	33625323	.	-	0	Parent=Os04t0659100-03
Chr04	irgsp1_rep	CDS	33624737	33624876	.	-	2	Parent=Os04t0659100-03
Chr04	irgsp1_rep	three_prime_UTR	33624438	33624736	.	-	.	Parent=Os04t0659100-03
Chr04	irgsp1_rep	mRNA	33631886	33634831	.	+	.	ID=Os04t0659125-01;Name=Os04t0659125-01;Locus_id=Os04g0659125;Note=Hypothetical gene.;Transcript_evidence=AK240834 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065015K15;TENOR=Os04t0659125-01;KEGG=Os04t0659125-01
Chr04	irgsp1_rep	five_prime_UTR	33631886	33632562	.	+	.	Parent=Os04t0659125-01
Chr04	irgsp1_rep	five_prime_UTR	33632644	33633848	.	+	.	Parent=Os04t0659125-01
Chr04	irgsp1_rep	five_prime_UTR	33634180	33634211	.	+	.	Parent=Os04t0659125-01
Chr04	irgsp1_rep	CDS	33634212	33634413	.	+	0	Parent=Os04t0659125-01
Chr04	irgsp1_rep	CDS	33634512	33634828	.	+	2	Parent=Os04t0659125-01
Chr04	irgsp1_rep	three_prime_UTR	33634829	33634831	.	+	.	Parent=Os04t0659125-01
Chr04	irgsp1_rep	mRNA	33631897	33634738	.	-	.	ID=Os04t0659150-00;Name=Os04t0659150-00;Locus_id=Os04g0659150;Note=Similar to OSIGBa0132E09-OSIGBa0108L24.12 protein.;Transcript_evidence=EU953450 (DDBJ);ORF_evidence=Q01I06 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989);TENOR=Os04t0659150-00;KEGG=Os04t0659150-00
Chr04	irgsp1_rep	CDS	33634512	33634738	.	-	0	Parent=Os04t0659150-00
Chr04	irgsp1_rep	CDS	33634180	33634413	.	-	1	Parent=Os04t0659150-00
Chr04	irgsp1_rep	CDS	33633764	33633848	.	-	1	Parent=Os04t0659150-00
Chr04	irgsp1_rep	three_prime_UTR	33632644	33633763	.	-	.	Parent=Os04t0659150-00
Chr04	irgsp1_rep	three_prime_UTR	33631897	33632562	.	-	.	Parent=Os04t0659150-00
Chr04	irgsp1_rep	mRNA	33635910	33638396	.	+	.	ID=Os04t0659200-01;Name=Os04t0659200-01;Locus_id=Os04g0659200;Note=Hypothetical protein.;Transcript_evidence=AK102258 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033088I24;TENOR=Os04t0659200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33635910	33637853	.	+	.	Parent=Os04t0659200-01
Chr04	irgsp1_rep	CDS	33637854	33638174	.	+	0	Parent=Os04t0659200-01
Chr04	irgsp1_rep	three_prime_UTR	33638175	33638396	.	+	.	Parent=Os04t0659200-01
Chr04	irgsp1_rep	mRNA	33641298	33642277	.	+	.	ID=Os04t0659300-01;Name=Os04t0659300-01;Locus_id=Os04g0659300;RAP-DB Gene Symbol Synonym(s)=OsRMC%2C OsRLK%2C OsDUF26;RAP-DB Gene Name Synonym(s)=root meander curling%2C receptor-like protein RMC%2C domain of unknown function 26;CGSNL Gene Symbol=RMC;CGSNL Gene Name=ROOT MEANDER CURLING;Oryzabase Gene Symbol Synonym(s)=OsRMC%2C OsRLK%2C OsDUF26%2C DUF26;Oryzabase Gene Name Synonym(s)=root meander curling%2C receptor-like protein RMC%2C domain of unknown function 26;Note=Receptor-like protein%2C Root development%2C Salt stress response%2C Regulation of iron acquisition;Transcript_evidence=AK111969,AY847141,AY911869;ORF_evidence=Q8S3P3;InterPro=Gnk2-homologous domain (IPR002902);NIAS_FLcDNA=006-211-C11;Manual Curation=September 29%2C 2015;Literature_PMID=17470145,19036832,24014863;Oryzabase=10887;Expression=AK111969;TENOR=Os04t0659300-01;KEGG=Os04t0659300-01
Chr04	irgsp1_rep	five_prime_UTR	33641298	33641352	.	+	.	Parent=Os04t0659300-01
Chr04	irgsp1_rep	CDS	33641353	33642129	.	+	0	Parent=Os04t0659300-01
Chr04	irgsp1_rep	three_prime_UTR	33642130	33642277	.	+	.	Parent=Os04t0659300-01
Chr04	irgsp1_rep	mRNA	33645186	33649308	.	+	.	ID=Os04t0659400-01;Name=Os04t0659400-01;Locus_id=Os04g0659400;Note=ENT domain containing protein.;Transcript_evidence=AK070174 (DDBJ%2C Best hit);ORF_evidence=Q01I03 (UniProt);InterPro=EMSY N-terminal (IPR005491);NIAS_FLcDNA=J023042D01;Expression=AK070174;TENOR=Os04t0659400-01;KEGG=Os04t0659400-01
Chr04	irgsp1_rep	five_prime_UTR	33645186	33645307	.	+	.	Parent=Os04t0659400-01
Chr04	irgsp1_rep	CDS	33645308	33645347	.	+	0	Parent=Os04t0659400-01
Chr04	irgsp1_rep	CDS	33646065	33646264	.	+	2	Parent=Os04t0659400-01
Chr04	irgsp1_rep	CDS	33646370	33646479	.	+	0	Parent=Os04t0659400-01
Chr04	irgsp1_rep	CDS	33646579	33646798	.	+	1	Parent=Os04t0659400-01
Chr04	irgsp1_rep	CDS	33646879	33647001	.	+	0	Parent=Os04t0659400-01
Chr04	irgsp1_rep	CDS	33647099	33647167	.	+	0	Parent=Os04t0659400-01
Chr04	irgsp1_rep	CDS	33648122	33648364	.	+	0	Parent=Os04t0659400-01
Chr04	irgsp1_rep	CDS	33648442	33648504	.	+	0	Parent=Os04t0659400-01
Chr04	irgsp1_rep	CDS	33648621	33648684	.	+	0	Parent=Os04t0659400-01
Chr04	irgsp1_rep	CDS	33648947	33649017	.	+	2	Parent=Os04t0659400-01
Chr04	irgsp1_rep	three_prime_UTR	33649018	33649308	.	+	.	Parent=Os04t0659400-01
Chr04	irgsp1_rep	mRNA	33648127	33648694	.	-	.	ID=Os04t0659450-00;Name=Os04t0659450-00;Locus_id=Os04g0659450;Note=Non-protein coding transcript.;Transcript_evidence=AK355936 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0659450-00
Chr04	irgsp1_rep	exon	33648127	33648694	.	-	.	Parent=Os04t0659450-00
Chr04	irgsp1_rep	mRNA	33649693	33653854	.	-	.	ID=Os04t0659500-01;Name=Os04t0659500-01;Locus_id=Os04g0659500;Oryzabase Gene Symbol Synonym(s)=OsPP2C45%2C PP2C45%2C OsPP70;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C45%2C protein phosphatase 2C 45%2C protein phosphatase 70;Note=Protein phosphatase 2C domain containing protein.;Transcript_evidence=AK059302 (DDBJ%2C Best hit);ORF_evidence=Q01I02 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=001-025-F07;Oryzabase=17919;Expression=AK059302;TENOR=Os04t0659500-01;KEGG=Os04t0659500-01
Chr04	irgsp1_rep	five_prime_UTR	33653624	33653854	.	-	.	Parent=Os04t0659500-01
Chr04	irgsp1_rep	CDS	33653562	33653623	.	-	0	Parent=Os04t0659500-01
Chr04	irgsp1_rep	CDS	33652507	33652514	.	-	1	Parent=Os04t0659500-01
Chr04	irgsp1_rep	CDS	33651913	33652011	.	-	2	Parent=Os04t0659500-01
Chr04	irgsp1_rep	CDS	33651667	33651822	.	-	2	Parent=Os04t0659500-01
Chr04	irgsp1_rep	CDS	33651227	33651313	.	-	2	Parent=Os04t0659500-01
Chr04	irgsp1_rep	CDS	33651056	33651147	.	-	2	Parent=Os04t0659500-01
Chr04	irgsp1_rep	CDS	33650243	33650317	.	-	0	Parent=Os04t0659500-01
Chr04	irgsp1_rep	CDS	33649998	33650147	.	-	0	Parent=Os04t0659500-01
Chr04	irgsp1_rep	three_prime_UTR	33649693	33649997	.	-	.	Parent=Os04t0659500-01
Chr04	irgsp1_rep	mRNA	33649693	33653823	.	-	.	ID=Os04t0659500-02;Name=Os04t0659500-02;Locus_id=Os04g0659500;Oryzabase Gene Symbol Synonym(s)=OsPP2C45%2C PP2C45%2C OsPP70;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C45%2C protein phosphatase 2C 45%2C protein phosphatase 70;Note=Similar to OSIGBa0132E09-OSIGBa0108L24.16 protein.;Transcript_evidence=AK072534 (DDBJ%2C Best hit);ORF_evidence=Q01I02 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J023131P07;Oryzabase=17919;Expression=AK072534;TENOR=Os04t0659500-02;KEGG=Os04t0659500-02 (EC:3.1.3.16)
Chr04	irgsp1_rep	five_prime_UTR	33653624	33653823	.	-	.	Parent=Os04t0659500-02
Chr04	irgsp1_rep	CDS	33653562	33653623	.	-	0	Parent=Os04t0659500-02
Chr04	irgsp1_rep	CDS	33652387	33652514	.	-	1	Parent=Os04t0659500-02
Chr04	irgsp1_rep	CDS	33651913	33652011	.	-	2	Parent=Os04t0659500-02
Chr04	irgsp1_rep	CDS	33651667	33651822	.	-	2	Parent=Os04t0659500-02
Chr04	irgsp1_rep	CDS	33651227	33651313	.	-	2	Parent=Os04t0659500-02
Chr04	irgsp1_rep	CDS	33651056	33651147	.	-	2	Parent=Os04t0659500-02
Chr04	irgsp1_rep	CDS	33650243	33650317	.	-	0	Parent=Os04t0659500-02
Chr04	irgsp1_rep	CDS	33649998	33650147	.	-	0	Parent=Os04t0659500-02
Chr04	irgsp1_rep	three_prime_UTR	33649693	33649997	.	-	.	Parent=Os04t0659500-02
Chr04	irgsp1_rep	mRNA	33658425	33664069	.	+	.	ID=Os04t0659800-00;Name=Os04t0659800-00;Locus_id=Os04g0659800;CGSNL Gene Symbol=AAP7B;CGSNL Gene Name=AMINO ACID PERMEASE 7B;Oryzabase Gene Symbol Synonym(s)=OsAAP7B%2C OsAAP14%2C AAP14;Oryzabase Gene Name Synonym(s)=amino acid permease 7B%2C amino acid permease 14%2C amino acid/auxin permease 14;Note=Similar to OSIGBa0132E09-OSIGBa0108L24.20 protein.;Transcript_evidence=BT038136 (DDBJ);ORF_evidence=Q01HZ8 (UniProt);InterPro=Amino acid transporter%2C transmembrane (IPR013057);Oryzabase=18498;TENOR=Os04t0659800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	33658425	33658713	.	+	0	Parent=Os04t0659800-00
Chr04	irgsp1_rep	CDS	33662153	33662386	.	+	2	Parent=Os04t0659800-00
Chr04	irgsp1_rep	CDS	33662548	33662641	.	+	2	Parent=Os04t0659800-00
Chr04	irgsp1_rep	CDS	33662739	33662956	.	+	1	Parent=Os04t0659800-00
Chr04	irgsp1_rep	CDS	33663066	33663199	.	+	2	Parent=Os04t0659800-00
Chr04	irgsp1_rep	CDS	33663305	33663532	.	+	0	Parent=Os04t0659800-00
Chr04	irgsp1_rep	CDS	33663624	33664052	.	+	0	Parent=Os04t0659800-00
Chr04	irgsp1_rep	three_prime_UTR	33664053	33664069	.	+	.	Parent=Os04t0659800-00
Chr04	irgsp1_rep	mRNA	33663302	33663534	.	-	.	ID=Os04t0659850-00;Name=Os04t0659850-00;Locus_id=Os04g0659850;Note=Hypothetical protein.;Transcript_evidence=EU948741 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0659850-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33663533	33663534	.	-	.	Parent=Os04t0659850-00
Chr04	irgsp1_rep	CDS	33663302	33663532	.	-	0	Parent=Os04t0659850-00
Chr04	irgsp1_rep	mRNA	33665044	33672745	.	+	.	ID=Os04t0659900-01;Name=Os04t0659900-01;Locus_id=Os04g0659900;CGSNL Gene Symbol=SPLHM47%2C SPL34;CGSNL Gene Name=SPOTTED-LEAF HM47%2C SPOTTED LEAF 34;Oryzabase Gene Symbol Synonym(s)=splHM47%2C HM47%2C OsPelo%2C OsPELO%2C PELO%2C LML1%2C OsLML1%2C OsSPL34;Oryzabase Gene Name Synonym(s)=spotted-leaf HM47%2C OsPELOTA%2C PELOTA%2C lesion mimic leaf 1%2C spotted leaf 34;Note=Similar to OSIGBa0132E09-OSIGBa0108L24.21 protein.;Transcript_evidence=AK073962 (DDBJ%2C Best hit);ORF_evidence=Q01I09 (UniProt);InterPro=Translation release factor  pelota-like (IPR004405),eRF1 domain 1/Pelota-like (IPR005140);NIAS_FLcDNA=J033072B10;Oryzabase=22210,23060;Expression=AK073962;TENOR=Os04t0659900-01;KEGG=Os04t0659900-01
Chr04	irgsp1_rep	five_prime_UTR	33665044	33665193	.	+	.	Parent=Os04t0659900-01
Chr04	irgsp1_rep	CDS	33665194	33665244	.	+	0	Parent=Os04t0659900-01
Chr04	irgsp1_rep	CDS	33665409	33665491	.	+	0	Parent=Os04t0659900-01
Chr04	irgsp1_rep	CDS	33666139	33666214	.	+	1	Parent=Os04t0659900-01
Chr04	irgsp1_rep	CDS	33666773	33666904	.	+	0	Parent=Os04t0659900-01
Chr04	irgsp1_rep	CDS	33668484	33668537	.	+	0	Parent=Os04t0659900-01
Chr04	irgsp1_rep	three_prime_UTR	33668538	33670091	.	+	.	Parent=Os04t0659900-01
Chr04	irgsp1_rep	three_prime_UTR	33670373	33670479	.	+	.	Parent=Os04t0659900-01
Chr04	irgsp1_rep	three_prime_UTR	33671209	33671281	.	+	.	Parent=Os04t0659900-01
Chr04	irgsp1_rep	three_prime_UTR	33671471	33671509	.	+	.	Parent=Os04t0659900-01
Chr04	irgsp1_rep	three_prime_UTR	33671886	33671980	.	+	.	Parent=Os04t0659900-01
Chr04	irgsp1_rep	three_prime_UTR	33672199	33672305	.	+	.	Parent=Os04t0659900-01
Chr04	irgsp1_rep	three_prime_UTR	33672495	33672745	.	+	.	Parent=Os04t0659900-01
Chr04	irgsp1_rep	mRNA	33665054	33672728	.	+	.	ID=Os04t0659900-02;Name=Os04t0659900-02;Locus_id=Os04g0659900;CGSNL Gene Symbol=SPLHM47%2C SPL34;CGSNL Gene Name=SPOTTED-LEAF HM47%2C SPOTTED LEAF 34;Oryzabase Gene Symbol Synonym(s)=splHM47%2C HM47%2C OsPelo%2C OsPELO%2C PELO%2C LML1%2C OsLML1%2C OsSPL34;Oryzabase Gene Name Synonym(s)=spotted-leaf HM47%2C OsPELOTA%2C PELOTA%2C lesion mimic leaf 1%2C spotted leaf 34;Note=Similar to OSIGBa0132E09-OSIGBa0108L24.21 protein.;Transcript_evidence=AK060780 (DDBJ%2C Best hit);ORF_evidence=Q01I09 (UniProt);InterPro=Translation release factor  pelota-like (IPR004405),eRF1 domain 1/Pelota-like (IPR005140);NIAS_FLcDNA=001-033-C05;Oryzabase=22210,23060;TENOR=Os04t0659900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33665054	33665054	.	+	.	Parent=Os04t0659900-02
Chr04	irgsp1_rep	CDS	33665055	33665244	.	+	0	Parent=Os04t0659900-02
Chr04	irgsp1_rep	CDS	33665386	33665491	.	+	2	Parent=Os04t0659900-02
Chr04	irgsp1_rep	CDS	33666139	33666214	.	+	1	Parent=Os04t0659900-02
Chr04	irgsp1_rep	CDS	33666773	33666904	.	+	0	Parent=Os04t0659900-02
Chr04	irgsp1_rep	CDS	33668484	33668529	.	+	0	Parent=Os04t0659900-02
Chr04	irgsp1_rep	CDS	33669479	33669554	.	+	2	Parent=Os04t0659900-02
Chr04	irgsp1_rep	CDS	33669754	33669886	.	+	1	Parent=Os04t0659900-02
Chr04	irgsp1_rep	three_prime_UTR	33669887	33670091	.	+	.	Parent=Os04t0659900-02
Chr04	irgsp1_rep	three_prime_UTR	33670373	33670479	.	+	.	Parent=Os04t0659900-02
Chr04	irgsp1_rep	three_prime_UTR	33671209	33671281	.	+	.	Parent=Os04t0659900-02
Chr04	irgsp1_rep	three_prime_UTR	33671471	33671580	.	+	.	Parent=Os04t0659900-02
Chr04	irgsp1_rep	three_prime_UTR	33671886	33671980	.	+	.	Parent=Os04t0659900-02
Chr04	irgsp1_rep	three_prime_UTR	33672199	33672305	.	+	.	Parent=Os04t0659900-02
Chr04	irgsp1_rep	three_prime_UTR	33672495	33672728	.	+	.	Parent=Os04t0659900-02
Chr04	irgsp1_rep	mRNA	33665023	33672967	.	+	.	ID=Os04t0659900-03;Name=Os04t0659900-03;Locus_id=Os04g0659900;RAP-DB Gene Symbol Synonym(s)=LML1%2C OsPELOTA%2C splHM47%2C spl<sup>HM47</sup>;RAP-DB Gene Name Synonym(s)=lesion mimic leaf 1;CGSNL Gene Symbol=SPLHM47%2C SPL34;CGSNL Gene Name=SPOTTED-LEAF HM47%2C SPOTTED LEAF 34;Oryzabase Gene Symbol Synonym(s)=splHM47%2C HM47%2C OsPelo%2C OsPELO%2C PELO%2C LML1%2C OsLML1%2C OsSPL34;Oryzabase Gene Name Synonym(s)=spotted-leaf HM47%2C OsPELOTA%2C PELOTA%2C lesion mimic leaf 1%2C spotted leaf 34;Note=Eukaryotic release factor 1 (eRF1) protein%2C Regulation of cell death and pathogen resistance%2C Bacterial leaf blight resistance;Transcript_evidence=Inferred from literature;ORF_evidence=Q7XR03;GO=Biological Process: nuclear-transcribed mRNA catabolic process%2C non-stop decay (GO:0070481),Biological Process: nuclear-transcribed mRNA catabolic process%2C no-go decay (GO:0070966),Biological Process: RNA surveillance (GO:0071025);InterPro=Pelota/DOM34%2C N-terminal domain (IPR038069),50S ribosomal protein L30e-like (IPR029064),Translation release factor  pelota (IPR004405),eRF1 domain 1/Pelota-like (IPR005140),eRF1 domain 2 (IPR005141),eRF1 domain 3 (IPR005142);Manual Curation=October 18%2C 2018;Literature_PMID=29566164,29193778,23210861;Oryzabase=22210,23060;Subcellular location=endoplasmic reticulum (GO:0005783)
Chr04	irgsp1_rep	five_prime_UTR	33665023	33665193	.	+	.	Parent=Os04t0659900-03
Chr04	irgsp1_rep	CDS	33665194	33665244	.	+	0	Parent=Os04t0659900-03
Chr04	irgsp1_rep	CDS	33665409	33665491	.	+	0	Parent=Os04t0659900-03
Chr04	irgsp1_rep	CDS	33666139	33666214	.	+	1	Parent=Os04t0659900-03
Chr04	irgsp1_rep	CDS	33666773	33666904	.	+	0	Parent=Os04t0659900-03
Chr04	irgsp1_rep	CDS	33668484	33668529	.	+	0	Parent=Os04t0659900-03
Chr04	irgsp1_rep	CDS	33669479	33669554	.	+	2	Parent=Os04t0659900-03
Chr04	irgsp1_rep	CDS	33669754	33669829	.	+	1	Parent=Os04t0659900-03
Chr04	irgsp1_rep	CDS	33669908	33669940	.	+	0	Parent=Os04t0659900-03
Chr04	irgsp1_rep	CDS	33670023	33670091	.	+	0	Parent=Os04t0659900-03
Chr04	irgsp1_rep	CDS	33670373	33670479	.	+	0	Parent=Os04t0659900-03
Chr04	irgsp1_rep	CDS	33671209	33671281	.	+	1	Parent=Os04t0659900-03
Chr04	irgsp1_rep	CDS	33671471	33671509	.	+	0	Parent=Os04t0659900-03
Chr04	irgsp1_rep	CDS	33671886	33671980	.	+	0	Parent=Os04t0659900-03
Chr04	irgsp1_rep	CDS	33672199	33672305	.	+	1	Parent=Os04t0659900-03
Chr04	irgsp1_rep	CDS	33672495	33672568	.	+	2	Parent=Os04t0659900-03
Chr04	irgsp1_rep	three_prime_UTR	33672569	33672967	.	+	.	Parent=Os04t0659900-03
Chr04	irgsp1_rep	mRNA	33676329	33676925	.	+	.	ID=Os04t0660000-01;Name=Os04t0660000-01;Locus_id=Os04g0660000;Note=Similar to OSIGBa0132E09-OSIGBa0108L24.22 protein.;Transcript_evidence=AK111359 (DDBJ%2C Best hit);ORF_evidence=Q01I08 (UniProt);NIAS_FLcDNA=002-181-H04;Expression=AK111359;TENOR=Os04t0660000-01;KEGG=Os04t0660000-01
Chr04	irgsp1_rep	five_prime_UTR	33676329	33676408	.	+	.	Parent=Os04t0660000-01
Chr04	irgsp1_rep	CDS	33676409	33676723	.	+	0	Parent=Os04t0660000-01
Chr04	irgsp1_rep	three_prime_UTR	33676724	33676925	.	+	.	Parent=Os04t0660000-01
Chr04	irgsp1_rep	mRNA	33682229	33683540	.	-	.	ID=Os04t0660100-01;Name=Os04t0660100-01;Locus_id=Os04g0660100;Oryzabase Gene Symbol Synonym(s)=Os IBH1%2C OsIBH1%2C IBH1%2C OsbHLH175%2C bHLH175;Oryzabase Gene Name Synonym(s)=ILI1Binding bHLH Protein1%2C ILI1 Binding bHLH 1%2C basic helix-loop-helix protein 175;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=AK109923 (DDBJ%2C Best hit);ORF_evidence=Q01I07 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=002-151-C02;Oryzabase=10951;Expression=AK109923;TENOR=Os04t0660100-01;KEGG=Os04t0660100-01
Chr04	irgsp1_rep	five_prime_UTR	33683353	33683540	.	-	.	Parent=Os04t0660100-01
Chr04	irgsp1_rep	CDS	33682744	33683352	.	-	0	Parent=Os04t0660100-01
Chr04	irgsp1_rep	three_prime_UTR	33682229	33682743	.	-	.	Parent=Os04t0660100-01
Chr04	irgsp1_rep	mRNA	33676818	33683268	.	-	.	ID=Os04t0660100-02;Name=Os04t0660100-02;Locus_id=Os04g0660100;Oryzabase Gene Symbol Synonym(s)=Os IBH1%2C OsIBH1%2C IBH1%2C OsbHLH175%2C bHLH175;Oryzabase Gene Name Synonym(s)=ILI1Binding bHLH Protein1%2C ILI1 Binding bHLH 1%2C basic helix-loop-helix protein 175;Note=Similar to H0112G12.1 protein.;Transcript_evidence=AK288609 (DDBJ%2C Best hit);ORF_evidence=Q01I07 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J090053H14;Oryzabase=10951;TENOR=Os04t0660100-02;KEGG=Os04t0660100-02
Chr04	irgsp1_rep	CDS	33682744	33683268	.	-	0	Parent=Os04t0660100-02
Chr04	irgsp1_rep	three_prime_UTR	33682732	33682743	.	-	.	Parent=Os04t0660100-02
Chr04	irgsp1_rep	three_prime_UTR	33676818	33682125	.	-	.	Parent=Os04t0660100-02
Chr04	irgsp1_rep	mRNA	33697886	33703610	.	-	.	ID=Os04t0660200-01;Name=Os04t0660200-01;Locus_id=Os04g0660200;Note=Similar to H0112G12.2 protein.;Transcript_evidence=AK120239 (DDBJ%2C Best hit);ORF_evidence=Q01JL8 (UniProt);GO=Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=ABC-1 (IPR004147),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J013044B08;TENOR=Os04t0660200-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33703352	33703610	.	-	.	Parent=Os04t0660200-01
Chr04	irgsp1_rep	CDS	33703317	33703351	.	-	0	Parent=Os04t0660200-01
Chr04	irgsp1_rep	CDS	33703094	33703168	.	-	1	Parent=Os04t0660200-01
Chr04	irgsp1_rep	CDS	33701672	33703004	.	-	1	Parent=Os04t0660200-01
Chr04	irgsp1_rep	CDS	33700724	33700993	.	-	0	Parent=Os04t0660200-01
Chr04	irgsp1_rep	CDS	33699586	33699741	.	-	0	Parent=Os04t0660200-01
Chr04	irgsp1_rep	CDS	33698336	33698455	.	-	0	Parent=Os04t0660200-01
Chr04	irgsp1_rep	three_prime_UTR	33697886	33698335	.	-	.	Parent=Os04t0660200-01
Chr04	irgsp1_rep	mRNA	33704890	33707242	.	+	.	ID=Os04t0660400-01;Name=Os04t0660400-01;Locus_id=Os04g0660400;CGSNL Gene Symbol=UAM2;CGSNL Gene Name=UDP-ARABINOPYRANOSE MUTASE 2;Oryzabase Gene Symbol Synonym(s)=OsUAM2;Oryzabase Gene Name Synonym(s)=UDP-Arabinopyranose Mutase 2;Note=Similar to Amylogenin%3B reversibly glycosylatable polypeptide (Amylogenin).;Transcript_evidence=AK071012 (DDBJ%2C Best hit);ORF_evidence=Q9ZR36 (UniProt);GO=Biological Process: cellular cell wall organization (GO:0007047),Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: cell wall (GO:0005618),Cellular Component: cell junction (GO:0030054),Molecular Function: glycogenin glucosyltransferase activity (GO:0008466),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=Alpha-1%2C4-glucan-protein synthase%2C UDP-forming (IPR004901);NIAS_FLcDNA=J023079O10;Oryzabase=8827;Expression=AK071012;TENOR=Os04t0660400-01;KEGG=Os04t0660400-01
Chr04	irgsp1_rep	five_prime_UTR	33704890	33705175	.	+	.	Parent=Os04t0660400-01
Chr04	irgsp1_rep	five_prime_UTR	33705692	33705821	.	+	.	Parent=Os04t0660400-01
Chr04	irgsp1_rep	five_prime_UTR	33705917	33705977	.	+	.	Parent=Os04t0660400-01
Chr04	irgsp1_rep	CDS	33705978	33707021	.	+	0	Parent=Os04t0660400-01
Chr04	irgsp1_rep	three_prime_UTR	33707022	33707242	.	+	.	Parent=Os04t0660400-01
Chr04	irgsp1_rep	mRNA	33704971	33707197	.	+	.	ID=Os04t0660400-02;Name=Os04t0660400-02;Locus_id=Os04g0660400;CGSNL Gene Symbol=UAM2;CGSNL Gene Name=UDP-ARABINOPYRANOSE MUTASE 2;Oryzabase Gene Symbol Synonym(s)=OsUAM2;Oryzabase Gene Name Synonym(s)=UDP-Arabinopyranose Mutase 2;Note=Similar to Amylogenin%3B reversibly glycosylatable polypeptide (Amylogenin).;Transcript_evidence=AK104316 (DDBJ%2C Best hit);ORF_evidence=Q9ZR36 (UniProt);GO=Biological Process: cellular cell wall organization (GO:0007047),Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: cell wall (GO:0005618),Cellular Component: cell junction (GO:0030054),Molecular Function: glycogenin glucosyltransferase activity (GO:0008466),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=Alpha-1%2C4-glucan-protein synthase%2C UDP-forming (IPR004901);NIAS_FLcDNA=001-023-H07;Oryzabase=8827;Expression=AK104316;TENOR=Os04t0660400-02;KEGG=Os04t0660400-02
Chr04	irgsp1_rep	five_prime_UTR	33704971	33705175	.	+	.	Parent=Os04t0660400-02
Chr04	irgsp1_rep	five_prime_UTR	33705692	33705821	.	+	.	Parent=Os04t0660400-02
Chr04	irgsp1_rep	five_prime_UTR	33705917	33705977	.	+	.	Parent=Os04t0660400-02
Chr04	irgsp1_rep	CDS	33705978	33707021	.	+	0	Parent=Os04t0660400-02
Chr04	irgsp1_rep	three_prime_UTR	33707022	33707197	.	+	.	Parent=Os04t0660400-02
Chr04	irgsp1_rep	mRNA	33705698	33707197	.	+	.	ID=Os04t0660400-03;Name=Os04t0660400-03;Locus_id=Os04g0660400;CGSNL Gene Symbol=UAM2;CGSNL Gene Name=UDP-ARABINOPYRANOSE MUTASE 2;Oryzabase Gene Symbol Synonym(s)=OsUAM2;Oryzabase Gene Name Synonym(s)=UDP-Arabinopyranose Mutase 2;Note=Similar to Amylogenin%3B reversibly glycosylatable polypeptide (Amylogenin).;Transcript_evidence=AK058644 (DDBJ%2C Best hit);ORF_evidence=Q9ZR36 (UniProt);GO=Biological Process: cellular cell wall organization (GO:0007047),Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: cell wall (GO:0005618),Cellular Component: cell junction (GO:0030054),Molecular Function: glycogenin glucosyltransferase activity (GO:0008466),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=Alpha-1%2C4-glucan-protein synthase%2C UDP-forming (IPR004901);NIAS_FLcDNA=001-018-E07;Oryzabase=8827;Expression=AK058644;TENOR=Os04t0660400-03;KEGG=Os04t0660400-03
Chr04	irgsp1_rep	five_prime_UTR	33705698	33705821	.	+	.	Parent=Os04t0660400-03
Chr04	irgsp1_rep	five_prime_UTR	33705917	33705977	.	+	.	Parent=Os04t0660400-03
Chr04	irgsp1_rep	CDS	33705978	33707021	.	+	0	Parent=Os04t0660400-03
Chr04	irgsp1_rep	three_prime_UTR	33707022	33707197	.	+	.	Parent=Os04t0660400-03
Chr04	irgsp1_rep	mRNA	33707455	33719236	.	-	.	ID=Os04t0660500-01;Name=Os04t0660500-01;Locus_id=Os04g0660500;RAP-DB Gene Symbol Synonym(s)=OsMAPKKK&epsilon%3B;RAP-DB Gene Name Synonym(s)=MAPK kinase kinase epsilon;Oryzabase Gene Symbol Synonym(s)=OsMAPKKKepsilon%2C MAPKKKepsilon;Oryzabase Gene Name Synonym(s)=MAPK kinase kinase epsilon;Note=MAPK kinase kinase epsilon%2C Chitin signaling pathway%2C Rice blast resistance;Transcript_evidence=AK099839;ORF_evidence=Q7XR00;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),Protein kinase domain (IPR000719),Serine-threonine/tyrosine-protein kinase%2C catalytic domain (IPR001245),Armadillo (IPR000225),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J013107K18;Manual Curation=June 16%2C 2020;Literature_PMID=28111288;Oryzabase=21734;Expression=AK099839;TENOR=Os04t0660500-01;KEGG=Os04t0660500-01;Subcellular location=plasma membrane (GO:0005886)
Chr04	irgsp1_rep	five_prime_UTR	33718961	33719236	.	-	.	Parent=Os04t0660500-01
Chr04	irgsp1_rep	CDS	33718901	33718960	.	-	0	Parent=Os04t0660500-01
Chr04	irgsp1_rep	CDS	33718635	33718769	.	-	0	Parent=Os04t0660500-01
Chr04	irgsp1_rep	CDS	33716852	33716872	.	-	0	Parent=Os04t0660500-01
Chr04	irgsp1_rep	CDS	33716313	33716386	.	-	0	Parent=Os04t0660500-01
Chr04	irgsp1_rep	CDS	33716110	33716200	.	-	1	Parent=Os04t0660500-01
Chr04	irgsp1_rep	CDS	33715952	33716035	.	-	0	Parent=Os04t0660500-01
Chr04	irgsp1_rep	CDS	33715523	33715624	.	-	0	Parent=Os04t0660500-01
Chr04	irgsp1_rep	CDS	33715144	33715275	.	-	0	Parent=Os04t0660500-01
Chr04	irgsp1_rep	CDS	33714966	33715037	.	-	0	Parent=Os04t0660500-01
Chr04	irgsp1_rep	CDS	33714773	33714876	.	-	0	Parent=Os04t0660500-01
Chr04	irgsp1_rep	CDS	33713921	33714032	.	-	1	Parent=Os04t0660500-01
Chr04	irgsp1_rep	CDS	33713407	33713793	.	-	0	Parent=Os04t0660500-01
Chr04	irgsp1_rep	CDS	33712607	33712900	.	-	0	Parent=Os04t0660500-01
Chr04	irgsp1_rep	CDS	33712466	33712510	.	-	0	Parent=Os04t0660500-01
Chr04	irgsp1_rep	CDS	33711743	33711922	.	-	0	Parent=Os04t0660500-01
Chr04	irgsp1_rep	CDS	33711582	33711665	.	-	0	Parent=Os04t0660500-01
Chr04	irgsp1_rep	CDS	33711403	33711494	.	-	0	Parent=Os04t0660500-01
Chr04	irgsp1_rep	CDS	33711222	33711305	.	-	1	Parent=Os04t0660500-01
Chr04	irgsp1_rep	CDS	33710433	33711124	.	-	1	Parent=Os04t0660500-01
Chr04	irgsp1_rep	CDS	33709784	33710178	.	-	2	Parent=Os04t0660500-01
Chr04	irgsp1_rep	CDS	33709550	33709684	.	-	0	Parent=Os04t0660500-01
Chr04	irgsp1_rep	CDS	33708362	33708768	.	-	0	Parent=Os04t0660500-01
Chr04	irgsp1_rep	CDS	33708146	33708260	.	-	1	Parent=Os04t0660500-01
Chr04	irgsp1_rep	CDS	33707792	33707968	.	-	0	Parent=Os04t0660500-01
Chr04	irgsp1_rep	three_prime_UTR	33707455	33707791	.	-	.	Parent=Os04t0660500-01
Chr04	irgsp1_rep	mRNA	33720826	33723387	.	-	.	ID=Os04t0660600-01;Name=Os04t0660600-01;Locus_id=Os04g0660600;Note=ATPase%2C V0 complex%2C subunit E domain containing protein.;Transcript_evidence=AK120899 (DDBJ%2C Best hit);ORF_evidence=Q01JL5 (UniProt);GO=Biological Process: ATP hydrolysis coupled proton transport (GO:0015991),Cellular Component: proton-transporting V-type ATPase%2C V0 domain (GO:0033179),Molecular Function: hydrogen ion transmembrane transporter activity (GO:0015078);InterPro=ATPase%2C V0 complex%2C subunit E (IPR008389);NIAS_FLcDNA=J023030J05;Expression=AK120899;TENOR=Os04t0660600-01;KEGG=Os04t0660600-01 (EC:3.6.3.14)
Chr04	irgsp1_rep	five_prime_UTR	33723265	33723387	.	-	.	Parent=Os04t0660600-01
Chr04	irgsp1_rep	CDS	33723167	33723264	.	-	0	Parent=Os04t0660600-01
Chr04	irgsp1_rep	CDS	33721762	33721809	.	-	1	Parent=Os04t0660600-01
Chr04	irgsp1_rep	CDS	33721066	33721129	.	-	1	Parent=Os04t0660600-01
Chr04	irgsp1_rep	three_prime_UTR	33720826	33721065	.	-	.	Parent=Os04t0660600-01
Chr04	irgsp1_rep	mRNA	33729812	33732506	.	+	.	ID=Os04t0660900-01;Name=Os04t0660900-01;Locus_id=Os04g0660900;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=TGF-beta receptor%2C type I/II extracellular region family protein.;Transcript_evidence=AK108874 (DDBJ%2C Best hit);ORF_evidence=Q01JL3 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=002-152-C12;Oryzabase=23657;Expression=AK108874;TENOR=Os04t0660900-01;KEGG=Os04t0660900-01
Chr04	irgsp1_rep	five_prime_UTR	33729812	33729870	.	+	.	Parent=Os04t0660900-01
Chr04	irgsp1_rep	CDS	33729871	33730021	.	+	0	Parent=Os04t0660900-01
Chr04	irgsp1_rep	CDS	33730296	33730513	.	+	2	Parent=Os04t0660900-01
Chr04	irgsp1_rep	CDS	33730885	33732411	.	+	0	Parent=Os04t0660900-01
Chr04	irgsp1_rep	three_prime_UTR	33732412	33732506	.	+	.	Parent=Os04t0660900-01
Chr04	irgsp1_rep	mRNA	33733561	33734332	.	-	.	ID=Os04t0661100-00;Name=Os04t0661100-00;Locus_id=Os04g0661100;CGSNL Gene Symbol=HMP29;CGSNL Gene Name=HEAVY METAL-ASSOCIATED PROTEIN 29;Oryzabase Gene Symbol Synonym(s)=OsHMP29;Oryzabase Gene Name Synonym(s)=Heavy metal-associated protein 29;Note=Similar to H0112G12.8 protein.;Transcript_evidence=AK363133 (DDBJ);ORF_evidence=Q01JL2 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);Oryzabase=23548;TENOR=Os04t0661100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33734327	33734332	.	-	.	Parent=Os04t0661100-00
Chr04	irgsp1_rep	CDS	33734242	33734326	.	-	0	Parent=Os04t0661100-00
Chr04	irgsp1_rep	CDS	33733608	33733990	.	-	2	Parent=Os04t0661100-00
Chr04	irgsp1_rep	three_prime_UTR	33733561	33733607	.	-	.	Parent=Os04t0661100-00
Chr04	irgsp1_rep	mRNA	33735145	33739378	.	-	.	ID=Os04t0661200-01;Name=Os04t0661200-01;Locus_id=Os04g0661200;Oryzabase Gene Symbol Synonym(s)=OsIPK1%2C IPK1;Oryzabase Gene Name Synonym(s)=inositol 1%2C 3%2C 4%2C 5%2C 6-pentakisphosphate 2-kinase 1;Note=Inositol-pentakisphosphate 2-kinase%2C metazoa domain containing protein.;Transcript_evidence=AK102842 (DDBJ%2C Best hit);ORF_evidence=Q01JL1 (UniProt);GO=Molecular Function: ATP binding (GO:0005524),Molecular Function: inositol pentakisphosphate 2-kinase activity (GO:0035299);InterPro=Inositol-pentakisphosphate 2-kinase (IPR009286);NIAS_FLcDNA=J033109O19;Oryzabase=11887;Expression=AK102842;TENOR=Os04t0661200-01;KEGG=Os04t0661200-01
Chr04	irgsp1_rep	five_prime_UTR	33739201	33739378	.	-	.	Parent=Os04t0661200-01
Chr04	irgsp1_rep	five_prime_UTR	33738938	33738950	.	-	.	Parent=Os04t0661200-01
Chr04	irgsp1_rep	CDS	33738836	33738937	.	-	0	Parent=Os04t0661200-01
Chr04	irgsp1_rep	CDS	33737788	33737991	.	-	0	Parent=Os04t0661200-01
Chr04	irgsp1_rep	CDS	33737448	33737592	.	-	0	Parent=Os04t0661200-01
Chr04	irgsp1_rep	CDS	33736795	33736835	.	-	2	Parent=Os04t0661200-01
Chr04	irgsp1_rep	CDS	33736608	33736718	.	-	0	Parent=Os04t0661200-01
Chr04	irgsp1_rep	CDS	33735781	33736368	.	-	0	Parent=Os04t0661200-01
Chr04	irgsp1_rep	CDS	33735490	33735636	.	-	0	Parent=Os04t0661200-01
Chr04	irgsp1_rep	three_prime_UTR	33735145	33735489	.	-	.	Parent=Os04t0661200-01
Chr04	irgsp1_rep	mRNA	33735214	33736035	.	+	.	ID=Os04t0661250-00;Name=Os04t0661250-00;Locus_id=Os04g0661250;Note=Hypothetical gene.;Transcript_evidence=BT017356 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0661250-00;KEGG=Os04t0661250-00
Chr04	irgsp1_rep	five_prime_UTR	33735214	33735632	.	+	.	Parent=Os04t0661250-00
Chr04	irgsp1_rep	CDS	33735633	33735650	.	+	0	Parent=Os04t0661250-00
Chr04	irgsp1_rep	CDS	33735794	33736015	.	+	0	Parent=Os04t0661250-00
Chr04	irgsp1_rep	three_prime_UTR	33736016	33736035	.	+	.	Parent=Os04t0661250-00
Chr04	irgsp1_rep	mRNA	33740459	33746973	.	-	.	ID=Os04t0661300-01;Name=Os04t0661300-01;Locus_id=Os04g0661300;Note=Similar to H0112G12.10 protein.;Transcript_evidence=AK070723 (DDBJ%2C Best hit);ORF_evidence=Q01JL0 (UniProt);NIAS_FLcDNA=J023059N04;Expression=AK070723;TENOR=Os04t0661300-01;KEGG=Os04t0661300-01
Chr04	irgsp1_rep	five_prime_UTR	33746813	33746973	.	-	.	Parent=Os04t0661300-01
Chr04	irgsp1_rep	CDS	33746633	33746812	.	-	0	Parent=Os04t0661300-01
Chr04	irgsp1_rep	CDS	33745985	33746023	.	-	0	Parent=Os04t0661300-01
Chr04	irgsp1_rep	CDS	33745782	33745835	.	-	0	Parent=Os04t0661300-01
Chr04	irgsp1_rep	CDS	33745628	33745691	.	-	0	Parent=Os04t0661300-01
Chr04	irgsp1_rep	CDS	33744903	33744961	.	-	2	Parent=Os04t0661300-01
Chr04	irgsp1_rep	CDS	33744130	33744254	.	-	0	Parent=Os04t0661300-01
Chr04	irgsp1_rep	CDS	33743919	33743978	.	-	1	Parent=Os04t0661300-01
Chr04	irgsp1_rep	CDS	33743670	33743728	.	-	1	Parent=Os04t0661300-01
Chr04	irgsp1_rep	CDS	33742904	33742977	.	-	2	Parent=Os04t0661300-01
Chr04	irgsp1_rep	CDS	33741408	33741446	.	-	0	Parent=Os04t0661300-01
Chr04	irgsp1_rep	CDS	33741268	33741330	.	-	0	Parent=Os04t0661300-01
Chr04	irgsp1_rep	CDS	33741117	33741164	.	-	0	Parent=Os04t0661300-01
Chr04	irgsp1_rep	CDS	33740904	33741032	.	-	0	Parent=Os04t0661300-01
Chr04	irgsp1_rep	CDS	33740765	33740812	.	-	0	Parent=Os04t0661300-01
Chr04	irgsp1_rep	three_prime_UTR	33740459	33740764	.	-	.	Parent=Os04t0661300-01
Chr04	irgsp1_rep	mRNA	33740412	33746887	.	-	.	ID=Os04t0661300-02;Name=Os04t0661300-02;Locus_id=Os04g0661300;Note=Similar to H0112G12.10 protein.;Transcript_evidence=AK103942 (DDBJ%2C Best hit);ORF_evidence=Q01JL0 (UniProt);NIAS_FLcDNA=001-013-G11;Expression=AK103942;TENOR=Os04t0661300-02;KEGG=Os04t0661300-02
Chr04	irgsp1_rep	five_prime_UTR	33746813	33746887	.	-	.	Parent=Os04t0661300-02
Chr04	irgsp1_rep	CDS	33746633	33746812	.	-	0	Parent=Os04t0661300-02
Chr04	irgsp1_rep	CDS	33745985	33746023	.	-	0	Parent=Os04t0661300-02
Chr04	irgsp1_rep	CDS	33745782	33745835	.	-	0	Parent=Os04t0661300-02
Chr04	irgsp1_rep	CDS	33745628	33745691	.	-	0	Parent=Os04t0661300-02
Chr04	irgsp1_rep	CDS	33744903	33744961	.	-	2	Parent=Os04t0661300-02
Chr04	irgsp1_rep	CDS	33744130	33744254	.	-	0	Parent=Os04t0661300-02
Chr04	irgsp1_rep	CDS	33743919	33743978	.	-	1	Parent=Os04t0661300-02
Chr04	irgsp1_rep	CDS	33743670	33743728	.	-	1	Parent=Os04t0661300-02
Chr04	irgsp1_rep	CDS	33742904	33742977	.	-	2	Parent=Os04t0661300-02
Chr04	irgsp1_rep	CDS	33741408	33741446	.	-	0	Parent=Os04t0661300-02
Chr04	irgsp1_rep	CDS	33741268	33741330	.	-	0	Parent=Os04t0661300-02
Chr04	irgsp1_rep	CDS	33741117	33741164	.	-	0	Parent=Os04t0661300-02
Chr04	irgsp1_rep	CDS	33740904	33741032	.	-	0	Parent=Os04t0661300-02
Chr04	irgsp1_rep	CDS	33740765	33740812	.	-	0	Parent=Os04t0661300-02
Chr04	irgsp1_rep	three_prime_UTR	33740412	33740764	.	-	.	Parent=Os04t0661300-02
Chr04	irgsp1_rep	mRNA	33755461	33764473	.	+	.	ID=Os04t0661600-01;Name=Os04t0661600-01;Locus_id=Os04g0661600;CGSNL Gene Symbol=CNX1;CGSNL Gene Name=CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 1;Oryzabase Gene Symbol Synonym(s)=OsCNX1;Oryzabase Gene Name Synonym(s)=cofactor for nitrate reductase and xanthine dehydrogenase 1;Note=Similar to H0112G12.13 protein.;Transcript_evidence=AK070456 (DDBJ%2C Best hit);ORF_evidence=Q01JK7 (UniProt);GO=Biological Process: Mo-molybdopterin cofactor biosynthetic process (GO:0006777),Biological Process: molybdopterin cofactor biosynthetic process (GO:0032324);InterPro=Molybdopterin binding (IPR001453),MoeA%2C N-terminal and linker domain (IPR005110);NIAS_FLcDNA=J023049F07;Oryzabase=23002;TENOR=Os04t0661600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33755461	33755652	.	+	.	Parent=Os04t0661600-01
Chr04	irgsp1_rep	five_prime_UTR	33755746	33755878	.	+	.	Parent=Os04t0661600-01
Chr04	irgsp1_rep	five_prime_UTR	33758097	33758375	.	+	.	Parent=Os04t0661600-01
Chr04	irgsp1_rep	CDS	33758376	33758402	.	+	0	Parent=Os04t0661600-01
Chr04	irgsp1_rep	CDS	33761363	33761464	.	+	0	Parent=Os04t0661600-01
Chr04	irgsp1_rep	CDS	33761547	33761625	.	+	0	Parent=Os04t0661600-01
Chr04	irgsp1_rep	CDS	33761714	33761721	.	+	2	Parent=Os04t0661600-01
Chr04	irgsp1_rep	three_prime_UTR	33761722	33761941	.	+	.	Parent=Os04t0661600-01
Chr04	irgsp1_rep	three_prime_UTR	33762144	33762331	.	+	.	Parent=Os04t0661600-01
Chr04	irgsp1_rep	three_prime_UTR	33762433	33762537	.	+	.	Parent=Os04t0661600-01
Chr04	irgsp1_rep	three_prime_UTR	33762618	33762941	.	+	.	Parent=Os04t0661600-01
Chr04	irgsp1_rep	three_prime_UTR	33763356	33763513	.	+	.	Parent=Os04t0661600-01
Chr04	irgsp1_rep	three_prime_UTR	33763609	33763715	.	+	.	Parent=Os04t0661600-01
Chr04	irgsp1_rep	three_prime_UTR	33763918	33763974	.	+	.	Parent=Os04t0661600-01
Chr04	irgsp1_rep	three_prime_UTR	33764062	33764473	.	+	.	Parent=Os04t0661600-01
Chr04	irgsp1_rep	mRNA	33755495	33758389	.	+	.	ID=Os04t0661600-02;Name=Os04t0661600-02;Locus_id=Os04g0661600;CGSNL Gene Symbol=CNX1;CGSNL Gene Name=CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 1;Oryzabase Gene Symbol Synonym(s)=OsCNX1;Oryzabase Gene Name Synonym(s)=cofactor for nitrate reductase and xanthine dehydrogenase 1;Note=Similar to H0112G12.12 protein.;Transcript_evidence=AK105225 (DDBJ%2C Best hit);ORF_evidence=Q01JK8 (UniProt);NIAS_FLcDNA=001-110-G06;Oryzabase=23002;Expression=AK105225;TENOR=Os04t0661600-02;KEGG=Os04t0661600-02
Chr04	irgsp1_rep	five_prime_UTR	33755495	33755579	.	+	.	Parent=Os04t0661600-02
Chr04	irgsp1_rep	CDS	33755580	33755652	.	+	0	Parent=Os04t0661600-02
Chr04	irgsp1_rep	CDS	33755746	33755873	.	+	2	Parent=Os04t0661600-02
Chr04	irgsp1_rep	three_prime_UTR	33755874	33755878	.	+	.	Parent=Os04t0661600-02
Chr04	irgsp1_rep	three_prime_UTR	33758097	33758389	.	+	.	Parent=Os04t0661600-02
Chr04	irgsp1_rep	mRNA	33761378	33764473	.	+	.	ID=Os04t0661600-03;Name=Os04t0661600-03;Locus_id=Os04g0661600;RAP-DB Gene Symbol Synonym(s)=OsCNX1;RAP-DB Gene Name Synonym(s)=cofactor for nitrate reductase and xanthine dehydrogenase 1;CGSNL Gene Symbol=CNX1;CGSNL Gene Name=CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 1;Oryzabase Gene Symbol Synonym(s)=OsCNX1;Oryzabase Gene Name Synonym(s)=cofactor for nitrate reductase and xanthine dehydrogenase 1;Note=Homolog of MoeA%2C Molybdenum cofactor biosynthesis;Transcript_evidence=AK058715 (truncated),Inferred from literature;ORF_evidence=Inferred from literature;GO=Biological Process: Mo-molybdopterin cofactor biosynthetic process (GO:0006777),Biological Process: molybdopterin cofactor biosynthetic process (GO:0032324);InterPro=MoaB/Mog-like domain superfamily (IPR036425),MoeA%2C C-terminal%2C domain IV superfamily (IPR036688),Molybdopterin biosynthesis protein MoeA-like (IPR038987),MoaB/Mog domain (IPR001453),MoeA%2C C-terminal%2C domain IV (IPR005111),Molybdenum cofactor biosynthesis%2C conserved site (IPR008284);NIAS_FLcDNA=001-019-D12 (truncated);Manual Curation=December 20%2C 2018;Literature_PMID=30471121;Oryzabase=23002;Expression=AK058715;TENOR=Os04t0661600-03;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33761378	33761464	.	+	.	Parent=Os04t0661600-03
Chr04	irgsp1_rep	five_prime_UTR	33761547	33761630	.	+	.	Parent=Os04t0661600-03
Chr04	irgsp1_rep	five_prime_UTR	33761714	33761734	.	+	.	Parent=Os04t0661600-03
Chr04	irgsp1_rep	CDS	33761735	33761941	.	+	0	Parent=Os04t0661600-03
Chr04	irgsp1_rep	CDS	33762144	33762331	.	+	0	Parent=Os04t0661600-03
Chr04	irgsp1_rep	CDS	33762433	33762537	.	+	1	Parent=Os04t0661600-03
Chr04	irgsp1_rep	CDS	33762618	33762941	.	+	1	Parent=Os04t0661600-03
Chr04	irgsp1_rep	CDS	33763356	33763513	.	+	1	Parent=Os04t0661600-03
Chr04	irgsp1_rep	CDS	33763609	33763715	.	+	2	Parent=Os04t0661600-03
Chr04	irgsp1_rep	CDS	33763918	33763974	.	+	0	Parent=Os04t0661600-03
Chr04	irgsp1_rep	CDS	33764062	33764271	.	+	0	Parent=Os04t0661600-03
Chr04	irgsp1_rep	three_prime_UTR	33764272	33764473	.	+	.	Parent=Os04t0661600-03
Chr04	irgsp1_rep	mRNA	33765000	33772389	.	-	.	ID=Os04t0661700-01;Name=Os04t0661700-01;Locus_id=Os04g0661700;Note=Similar to H0112G12.14 protein.;Transcript_evidence=AK066532 (DDBJ%2C Best hit);ORF_evidence=Q01JK6 (UniProt);NIAS_FLcDNA=J013073I20;TENOR=Os04t0661700-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33772338	33772389	.	-	.	Parent=Os04t0661700-01
Chr04	irgsp1_rep	CDS	33771978	33772337	.	-	0	Parent=Os04t0661700-01
Chr04	irgsp1_rep	CDS	33771348	33771390	.	-	0	Parent=Os04t0661700-01
Chr04	irgsp1_rep	CDS	33770456	33770713	.	-	2	Parent=Os04t0661700-01
Chr04	irgsp1_rep	CDS	33770280	33770372	.	-	2	Parent=Os04t0661700-01
Chr04	irgsp1_rep	CDS	33769362	33769732	.	-	2	Parent=Os04t0661700-01
Chr04	irgsp1_rep	CDS	33769137	33769286	.	-	0	Parent=Os04t0661700-01
Chr04	irgsp1_rep	CDS	33768828	33769022	.	-	0	Parent=Os04t0661700-01
Chr04	irgsp1_rep	CDS	33768421	33768495	.	-	0	Parent=Os04t0661700-01
Chr04	irgsp1_rep	CDS	33768261	33768327	.	-	0	Parent=Os04t0661700-01
Chr04	irgsp1_rep	CDS	33767915	33768190	.	-	2	Parent=Os04t0661700-01
Chr04	irgsp1_rep	CDS	33767049	33767838	.	-	2	Parent=Os04t0661700-01
Chr04	irgsp1_rep	CDS	33766900	33766956	.	-	1	Parent=Os04t0661700-01
Chr04	irgsp1_rep	CDS	33766262	33766330	.	-	1	Parent=Os04t0661700-01
Chr04	irgsp1_rep	CDS	33765397	33765439	.	-	1	Parent=Os04t0661700-01
Chr04	irgsp1_rep	three_prime_UTR	33765000	33765396	.	-	.	Parent=Os04t0661700-01
Chr04	irgsp1_rep	mRNA	33774455	33777293	.	-	.	ID=Os04t0661800-01;Name=Os04t0661800-01;Locus_id=Os04g0661800;Oryzabase Gene Symbol Synonym(s)=OsMED7%2C MED7%2C OsMed7_1%2C Med7_1;Oryzabase Gene Name Synonym(s)=Mediator complex protein OsMED7%2C Mediator 7_1;Note=MED7 family protein.;Transcript_evidence=AK242273 (DDBJ%2C Best hit);ORF_evidence=Q01JK5 (UniProt);GO=Biological Process: regulation of transcription from RNA polymerase II promoter (GO:0006357),Cellular Component: mediator complex (GO:0016592),Molecular Function: RNA polymerase II transcription cofactor activity (GO:0001104);InterPro=Mediator complex%2C subunit Med7 (IPR009244);NIAS_FLcDNA=J075187C13;Oryzabase=18692;TENOR=Os04t0661800-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33777148	33777293	.	-	.	Parent=Os04t0661800-01
Chr04	irgsp1_rep	five_prime_UTR	33775894	33775923	.	-	.	Parent=Os04t0661800-01
Chr04	irgsp1_rep	CDS	33775756	33775893	.	-	0	Parent=Os04t0661800-01
Chr04	irgsp1_rep	CDS	33775604	33775673	.	-	0	Parent=Os04t0661800-01
Chr04	irgsp1_rep	CDS	33775240	33775406	.	-	2	Parent=Os04t0661800-01
Chr04	irgsp1_rep	CDS	33775081	33775154	.	-	0	Parent=Os04t0661800-01
Chr04	irgsp1_rep	CDS	33774719	33774800	.	-	1	Parent=Os04t0661800-01
Chr04	irgsp1_rep	three_prime_UTR	33774455	33774718	.	-	.	Parent=Os04t0661800-01
Chr04	irgsp1_rep	mRNA	33777470	33781125	.	+	.	ID=Os04t0661900-01;Name=Os04t0661900-01;Locus_id=Os04g0661900;CGSNL Gene Symbol=RPN8;CGSNL Gene Name=19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 8;Oryzabase Gene Symbol Synonym(s)=OsRpn8%2C Rpn8;Oryzabase Gene Name Synonym(s)=19S regulatory particle non-ATPase subunit 8%2C RP non-ATPase 8;Note=Similar to 26S proteasome regulatory particle non-ATPase subunit8.;Transcript_evidence=AK103551 (DDBJ%2C Best hit);ORF_evidence=Q8W424 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Mov34/MPN/PAD-1 (IPR000555);NIAS_FLcDNA=J033132F12;Oryzabase=20567;TENOR=Os04t0661900-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33777470	33777682	.	+	.	Parent=Os04t0661900-01
Chr04	irgsp1_rep	CDS	33777683	33777869	.	+	0	Parent=Os04t0661900-01
Chr04	irgsp1_rep	CDS	33778100	33778192	.	+	2	Parent=Os04t0661900-01
Chr04	irgsp1_rep	CDS	33778276	33778357	.	+	2	Parent=Os04t0661900-01
Chr04	irgsp1_rep	CDS	33779110	33779206	.	+	1	Parent=Os04t0661900-01
Chr04	irgsp1_rep	CDS	33779296	33779349	.	+	0	Parent=Os04t0661900-01
Chr04	irgsp1_rep	three_prime_UTR	33779350	33779373	.	+	.	Parent=Os04t0661900-01
Chr04	irgsp1_rep	three_prime_UTR	33779584	33779642	.	+	.	Parent=Os04t0661900-01
Chr04	irgsp1_rep	three_prime_UTR	33779729	33779851	.	+	.	Parent=Os04t0661900-01
Chr04	irgsp1_rep	three_prime_UTR	33780431	33780488	.	+	.	Parent=Os04t0661900-01
Chr04	irgsp1_rep	three_prime_UTR	33780589	33780674	.	+	.	Parent=Os04t0661900-01
Chr04	irgsp1_rep	three_prime_UTR	33780770	33781125	.	+	.	Parent=Os04t0661900-01
Chr04	irgsp1_rep	mRNA	33777528	33781125	.	+	.	ID=Os04t0661900-02;Name=Os04t0661900-02;Locus_id=Os04g0661900;CGSNL Gene Symbol=RPN8;CGSNL Gene Name=19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 8;Oryzabase Gene Symbol Synonym(s)=OsRpn8%2C Rpn8;Oryzabase Gene Name Synonym(s)=19S regulatory particle non-ATPase subunit 8%2C RP non-ATPase 8;Note=Similar to 26S proteasome regulatory particle non-ATPase subunit8.;Transcript_evidence=AK061835 (DDBJ%2C Best hit),AK104076 (DDBJ%2C Best hit);ORF_evidence=Q8W424 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Mov34/MPN/PAD-1 (IPR000555);NIAS_FLcDNA=001-040-D07,001-028-C08;Oryzabase=20567;TENOR=Os04t0661900-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33777528	33777682	.	+	.	Parent=Os04t0661900-02
Chr04	irgsp1_rep	CDS	33777683	33777869	.	+	0	Parent=Os04t0661900-02
Chr04	irgsp1_rep	CDS	33778100	33778192	.	+	2	Parent=Os04t0661900-02
Chr04	irgsp1_rep	CDS	33778276	33778357	.	+	2	Parent=Os04t0661900-02
Chr04	irgsp1_rep	CDS	33779110	33779206	.	+	1	Parent=Os04t0661900-02
Chr04	irgsp1_rep	CDS	33779296	33779349	.	+	0	Parent=Os04t0661900-02
Chr04	irgsp1_rep	three_prime_UTR	33779350	33779373	.	+	.	Parent=Os04t0661900-02
Chr04	irgsp1_rep	three_prime_UTR	33779584	33779642	.	+	.	Parent=Os04t0661900-02
Chr04	irgsp1_rep	three_prime_UTR	33779729	33779851	.	+	.	Parent=Os04t0661900-02
Chr04	irgsp1_rep	three_prime_UTR	33780431	33780488	.	+	.	Parent=Os04t0661900-02
Chr04	irgsp1_rep	three_prime_UTR	33780589	33780674	.	+	.	Parent=Os04t0661900-02
Chr04	irgsp1_rep	three_prime_UTR	33780770	33781125	.	+	.	Parent=Os04t0661900-02
Chr04	irgsp1_rep	mRNA	33777675	33779206	.	-	.	ID=Os04t0661950-00;Name=Os04t0661950-00;Locus_id=Os04g0661950;Note=Non-protein coding transcript.;Transcript_evidence=BT083501 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0661950-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	exon	33779067	33779206	.	-	.	Parent=Os04t0661950-00
Chr04	irgsp1_rep	exon	33778275	33778441	.	-	.	Parent=Os04t0661950-00
Chr04	irgsp1_rep	exon	33778088	33778191	.	-	.	Parent=Os04t0661950-00
Chr04	irgsp1_rep	exon	33777675	33777858	.	-	.	Parent=Os04t0661950-00
Chr04	irgsp1_rep	mRNA	33782093	33784156	.	+	.	ID=Os04t0662000-00;Name=Os04t0662000-00;Locus_id=Os04g0662000;Note=Similar to BSD domain containing protein.;Transcript_evidence=FP097560 (DDBJ);ORF_evidence=B6TNU9 (UniProt);TENOR=Os04t0662000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33782093	33782170	.	+	.	Parent=Os04t0662000-00
Chr04	irgsp1_rep	CDS	33782171	33782381	.	+	0	Parent=Os04t0662000-00
Chr04	irgsp1_rep	CDS	33782461	33782541	.	+	2	Parent=Os04t0662000-00
Chr04	irgsp1_rep	CDS	33782647	33782696	.	+	2	Parent=Os04t0662000-00
Chr04	irgsp1_rep	three_prime_UTR	33782697	33782744	.	+	.	Parent=Os04t0662000-00
Chr04	irgsp1_rep	three_prime_UTR	33783654	33783821	.	+	.	Parent=Os04t0662000-00
Chr04	irgsp1_rep	three_prime_UTR	33783912	33784156	.	+	.	Parent=Os04t0662000-00
Chr04	irgsp1_rep	mRNA	33784400	33786414	.	-	.	ID=Os04t0662100-01;Name=Os04t0662100-01;Locus_id=Os04g0662100;Note=Similar to 40S ribosomal protein S4-like.;Transcript_evidence=AK109706 (DDBJ%2C Best hit);ORF_evidence=B4FE03 (UniProt);NIAS_FLcDNA=002-145-G05;TENOR=Os04t0662100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33786325	33786414	.	-	.	Parent=Os04t0662100-01
Chr04	irgsp1_rep	five_prime_UTR	33786230	33786241	.	-	.	Parent=Os04t0662100-01
Chr04	irgsp1_rep	CDS	33785837	33786229	.	-	0	Parent=Os04t0662100-01
Chr04	irgsp1_rep	three_prime_UTR	33784400	33785836	.	-	.	Parent=Os04t0662100-01
Chr04	irgsp1_rep	mRNA	33789435	33790386	.	-	.	ID=Os04t0662200-01;Name=Os04t0662200-01;Locus_id=Os04g0662200;CGSNL Gene Symbol=SAUR22;CGSNL Gene Name=SMALL AUXIN-UP RNA 22;Oryzabase Gene Symbol Synonym(s)=OsSAUR22;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 22;Note=Auxin responsive SAUR protein family protein.;Transcript_evidence=AK107934 (DDBJ%2C Best hit);ORF_evidence=XP_002306917.1 (RefSeq);InterPro=Auxin responsive SAUR protein (IPR003676);NIAS_FLcDNA=002-135-A05;Oryzabase=9147;Expression=AK107934;TENOR=Os04t0662200-01;KEGG=Os04t0662200-01
Chr04	irgsp1_rep	five_prime_UTR	33790291	33790386	.	-	.	Parent=Os04t0662200-01
Chr04	irgsp1_rep	CDS	33789859	33790290	.	-	0	Parent=Os04t0662200-01
Chr04	irgsp1_rep	three_prime_UTR	33789435	33789858	.	-	.	Parent=Os04t0662200-01
Chr04	irgsp1_rep	mRNA	33804424	33805473	.	-	.	ID=Os04t0662400-01;Name=Os04t0662400-01;Locus_id=Os04g0662400;CGSNL Gene Symbol=SAUR23;CGSNL Gene Name=SMALL AUXIN-UP RNA 23;Oryzabase Gene Symbol Synonym(s)=OsSAUR23;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 23;Note=Auxin responsive SAUR protein family protein.;Transcript_evidence=AK108652 (DDBJ%2C Best hit);ORF_evidence=NP_001151649.1 (RefSeq);InterPro=Auxin responsive SAUR protein (IPR003676);NIAS_FLcDNA=002-148-C10;Oryzabase=9148;Expression=AK108652;TENOR=Os04t0662400-01;KEGG=Os04t0662400-01
Chr04	irgsp1_rep	five_prime_UTR	33805335	33805473	.	-	.	Parent=Os04t0662400-01
Chr04	irgsp1_rep	CDS	33804873	33805334	.	-	0	Parent=Os04t0662400-01
Chr04	irgsp1_rep	three_prime_UTR	33804424	33804872	.	-	.	Parent=Os04t0662400-01
Chr04	irgsp1_rep	mRNA	33809616	33812412	.	-	.	ID=Os04t0662600-00;Name=Os04t0662600-00;Locus_id=Os04g0662600;CGSNL Gene Symbol=F3H1;CGSNL Gene Name=FLAVANONE 3-HYDROXYLASE 1;Oryzabase Gene Symbol Synonym(s)=OsF3H-1%2C F3H-1%2C OsF3H1%2C OsF3H%2C F3H;Oryzabase Gene Name Synonym(s)=Flavanone 3-hydroxylase 1;Note=Similar to Naringenin%2C2-oxoglutarate 3-dioxygenase.;Transcript_evidence=tplb0007i24 (Wheat FLcDNA);ORF_evidence=B6TMV8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);Oryzabase=20378;TENOR=Os04t0662600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	33811956	33812412	.	-	0	Parent=Os04t0662600-00
Chr04	irgsp1_rep	CDS	33810035	33810456	.	-	2	Parent=Os04t0662600-00
Chr04	irgsp1_rep	CDS	33809616	33809957	.	-	0	Parent=Os04t0662600-00
Chr04	irgsp1_rep	mRNA	33814158	33818739	.	-	.	ID=Os04t0662700-01;Name=Os04t0662700-01;Locus_id=Os04g0662700;Note=Similar to GTP cyclohydrolase 1 isoform TaA.;Transcript_evidence=AK069126 (DDBJ%2C Best hit);ORF_evidence=B0EVI8 (UniProt);NIAS_FLcDNA=J023007K22;TENOR=Os04t0662700-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33818654	33818739	.	-	.	Parent=Os04t0662700-01
Chr04	irgsp1_rep	CDS	33818632	33818653	.	-	0	Parent=Os04t0662700-01
Chr04	irgsp1_rep	CDS	33818254	33818507	.	-	2	Parent=Os04t0662700-01
Chr04	irgsp1_rep	CDS	33815806	33815823	.	-	0	Parent=Os04t0662700-01
Chr04	irgsp1_rep	three_prime_UTR	33814158	33815805	.	-	.	Parent=Os04t0662700-01
Chr04	irgsp1_rep	mRNA	33814214	33815691	.	-	.	ID=Os04t0662700-02;Name=Os04t0662700-02;Locus_id=Os04g0662700;Note=Similar to GTP cyclohydrolase 1 isoform TaA.;Transcript_evidence=AK105717 (DDBJ%2C Best hit);ORF_evidence=B0EVI8 (UniProt);GO=Biological Process: tetrahydrofolate biosynthetic process (GO:0046654),Cellular Component: cytoplasm (GO:0005737),Molecular Function: GTP cyclohydrolase I activity (GO:0003934);InterPro=GTP cyclohydrolase I (IPR001474),GTP cyclohydrolase I/Nitrile oxidoreductase (IPR020602);NIAS_FLcDNA=001-201-F05;Expression=AK105717;TENOR=Os04t0662700-02;KEGG=Os04t0662700-02 (EC:3.5.4.16)
Chr04	irgsp1_rep	five_prime_UTR	33815690	33815691	.	-	.	Parent=Os04t0662700-02
Chr04	irgsp1_rep	CDS	33814607	33815689	.	-	0	Parent=Os04t0662700-02
Chr04	irgsp1_rep	three_prime_UTR	33814214	33814606	.	-	.	Parent=Os04t0662700-02
Chr04	irgsp1_rep	mRNA	33822434	33828560	.	+	.	ID=Os04t0662800-01;Name=Os04t0662800-01;Locus_id=Os04g0662800;Note=Regulator of Chromosome condensation%2C RCC1 domain containing protein.;Transcript_evidence=AK102939 (DDBJ%2C Best hit);ORF_evidence=B6TA37 (UniProt);GO=Molecular Function: DNA binding (GO:0003677);InterPro=Regulator of Chromosome condensation%2C RCC1 (IPR000408),Regulator of Chromosome condensation/beta-lactamase-inhibitor protein II (IPR009091),AT hook%2C DNA-binding motif (IPR017956);NIAS_FLcDNA=J033114K02;Expression=AK102939;TENOR=Os04t0662800-01;KEGG=Os04t0662800-01
Chr04	irgsp1_rep	five_prime_UTR	33822434	33822549	.	+	.	Parent=Os04t0662800-01
Chr04	irgsp1_rep	CDS	33822550	33822781	.	+	0	Parent=Os04t0662800-01
Chr04	irgsp1_rep	CDS	33823544	33823605	.	+	2	Parent=Os04t0662800-01
Chr04	irgsp1_rep	CDS	33823670	33823737	.	+	0	Parent=Os04t0662800-01
Chr04	irgsp1_rep	CDS	33823859	33823980	.	+	1	Parent=Os04t0662800-01
Chr04	irgsp1_rep	CDS	33824355	33824460	.	+	2	Parent=Os04t0662800-01
Chr04	irgsp1_rep	CDS	33824590	33824641	.	+	1	Parent=Os04t0662800-01
Chr04	irgsp1_rep	CDS	33824724	33824841	.	+	0	Parent=Os04t0662800-01
Chr04	irgsp1_rep	CDS	33824935	33824965	.	+	2	Parent=Os04t0662800-01
Chr04	irgsp1_rep	CDS	33825161	33825184	.	+	1	Parent=Os04t0662800-01
Chr04	irgsp1_rep	CDS	33825274	33825398	.	+	1	Parent=Os04t0662800-01
Chr04	irgsp1_rep	CDS	33826286	33826367	.	+	2	Parent=Os04t0662800-01
Chr04	irgsp1_rep	CDS	33826518	33826640	.	+	1	Parent=Os04t0662800-01
Chr04	irgsp1_rep	CDS	33826738	33826791	.	+	1	Parent=Os04t0662800-01
Chr04	irgsp1_rep	CDS	33826868	33826937	.	+	1	Parent=Os04t0662800-01
Chr04	irgsp1_rep	CDS	33827475	33827508	.	+	0	Parent=Os04t0662800-01
Chr04	irgsp1_rep	CDS	33828023	33828369	.	+	2	Parent=Os04t0662800-01
Chr04	irgsp1_rep	three_prime_UTR	33828370	33828560	.	+	.	Parent=Os04t0662800-01
Chr04	irgsp1_rep	mRNA	33822444	33828449	.	-	.	ID=Os04t0662850-00;Name=Os04t0662850-00;Locus_id=Os04g0662850;Note=Hypothetical protein.;Transcript_evidence=tplb0060d11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0662850-00
Chr04	irgsp1_rep	five_prime_UTR	33827994	33828449	.	-	.	Parent=Os04t0662850-00
Chr04	irgsp1_rep	five_prime_UTR	33826865	33826941	.	-	.	Parent=Os04t0662850-00
Chr04	irgsp1_rep	five_prime_UTR	33826727	33826787	.	-	.	Parent=Os04t0662850-00
Chr04	irgsp1_rep	five_prime_UTR	33826528	33826627	.	-	.	Parent=Os04t0662850-00
Chr04	irgsp1_rep	five_prime_UTR	33826295	33826371	.	-	.	Parent=Os04t0662850-00
Chr04	irgsp1_rep	five_prime_UTR	33825259	33825407	.	-	.	Parent=Os04t0662850-00
Chr04	irgsp1_rep	five_prime_UTR	33824672	33824878	.	-	.	Parent=Os04t0662850-00
Chr04	irgsp1_rep	five_prime_UTR	33824365	33824458	.	-	.	Parent=Os04t0662850-00
Chr04	irgsp1_rep	five_prime_UTR	33823863	33823988	.	-	.	Parent=Os04t0662850-00
Chr04	irgsp1_rep	five_prime_UTR	33823688	33823744	.	-	.	Parent=Os04t0662850-00
Chr04	irgsp1_rep	CDS	33823668	33823687	.	-	0	Parent=Os04t0662850-00
Chr04	irgsp1_rep	CDS	33823531	33823603	.	-	1	Parent=Os04t0662850-00
Chr04	irgsp1_rep	CDS	33822447	33822770	.	-	0	Parent=Os04t0662850-00
Chr04	irgsp1_rep	three_prime_UTR	33822444	33822446	.	-	.	Parent=Os04t0662850-00
Chr04	irgsp1_rep	mRNA	33828953	33832503	.	-	.	ID=Os04t0662900-01;Name=Os04t0662900-01;Locus_id=Os04g0662900;Note=RNA polymerase III transcriptional repressor%2C MAF1 domain containing protein.;Transcript_evidence=AK099504 (DDBJ%2C Best hit),AK065171 (DDBJ%2C Best hit);ORF_evidence=Q01K35 (UniProt);GO=Biological Process: negative regulation of transcription from RNA polymerase III promoter (GO:0016480),Cellular Component: nucleus (GO:0005634);InterPro=Maf1 regulator (IPR015257),RNA polymerase III transcriptional repressor%2C MAF1 (IPR017152);NIAS_FLcDNA=J013028O12,J013002C20;Expression=AK099504;TENOR=Os04t0662900-01;KEGG=Os04t0662900-01
Chr04	irgsp1_rep	five_prime_UTR	33832325	33832503	.	-	.	Parent=Os04t0662900-01
Chr04	irgsp1_rep	five_prime_UTR	33831220	33831294	.	-	.	Parent=Os04t0662900-01
Chr04	irgsp1_rep	CDS	33831188	33831219	.	-	0	Parent=Os04t0662900-01
Chr04	irgsp1_rep	CDS	33831015	33831085	.	-	1	Parent=Os04t0662900-01
Chr04	irgsp1_rep	CDS	33830882	33830931	.	-	2	Parent=Os04t0662900-01
Chr04	irgsp1_rep	CDS	33830620	33830693	.	-	0	Parent=Os04t0662900-01
Chr04	irgsp1_rep	CDS	33830476	33830538	.	-	1	Parent=Os04t0662900-01
Chr04	irgsp1_rep	CDS	33830036	33830123	.	-	1	Parent=Os04t0662900-01
Chr04	irgsp1_rep	CDS	33829748	33829810	.	-	0	Parent=Os04t0662900-01
Chr04	irgsp1_rep	CDS	33829592	33829671	.	-	0	Parent=Os04t0662900-01
Chr04	irgsp1_rep	CDS	33829438	33829509	.	-	1	Parent=Os04t0662900-01
Chr04	irgsp1_rep	CDS	33829266	33829347	.	-	1	Parent=Os04t0662900-01
Chr04	irgsp1_rep	three_prime_UTR	33828953	33829265	.	-	.	Parent=Os04t0662900-01
Chr04	irgsp1_rep	mRNA	33828951	33832034	.	-	.	ID=Os04t0662900-02;Name=Os04t0662900-02;Locus_id=Os04g0662900;Note=RNA polymerase III transcriptional repressor%2C MAF1 domain containing protein.;Transcript_evidence=AK061921 (DDBJ%2C Best hit);ORF_evidence=Q01K35 (UniProt);GO=Biological Process: negative regulation of transcription from RNA polymerase III promoter (GO:0016480),Cellular Component: nucleus (GO:0005634);InterPro=Maf1 regulator (IPR015257),RNA polymerase III transcriptional repressor%2C MAF1 (IPR017152);NIAS_FLcDNA=001-042-B09;Expression=AK061921;TENOR=Os04t0662900-02;KEGG=Os04t0662900-02
Chr04	irgsp1_rep	five_prime_UTR	33831863	33832034	.	-	.	Parent=Os04t0662900-02
Chr04	irgsp1_rep	five_prime_UTR	33831220	33831294	.	-	.	Parent=Os04t0662900-02
Chr04	irgsp1_rep	CDS	33831188	33831219	.	-	0	Parent=Os04t0662900-02
Chr04	irgsp1_rep	CDS	33831015	33831085	.	-	1	Parent=Os04t0662900-02
Chr04	irgsp1_rep	CDS	33830882	33830931	.	-	2	Parent=Os04t0662900-02
Chr04	irgsp1_rep	CDS	33830620	33830693	.	-	0	Parent=Os04t0662900-02
Chr04	irgsp1_rep	CDS	33830476	33830538	.	-	1	Parent=Os04t0662900-02
Chr04	irgsp1_rep	CDS	33830036	33830123	.	-	1	Parent=Os04t0662900-02
Chr04	irgsp1_rep	CDS	33829748	33829810	.	-	0	Parent=Os04t0662900-02
Chr04	irgsp1_rep	CDS	33829592	33829671	.	-	0	Parent=Os04t0662900-02
Chr04	irgsp1_rep	CDS	33829438	33829509	.	-	1	Parent=Os04t0662900-02
Chr04	irgsp1_rep	CDS	33829266	33829347	.	-	1	Parent=Os04t0662900-02
Chr04	irgsp1_rep	three_prime_UTR	33828951	33829265	.	-	.	Parent=Os04t0662900-02
Chr04	irgsp1_rep	mRNA	33840011	33845901	.	+	.	ID=Os04t0663100-01;Name=Os04t0663100-01;Locus_id=Os04g0663100;Note=Similar to OSIGBa0099L20.2 protein.;Transcript_evidence=AK066310 (DDBJ%2C Best hit);ORF_evidence=Q01K34 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);NIAS_FLcDNA=J013063E15;TENOR=Os04t0663100-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33840011	33840172	.	+	.	Parent=Os04t0663100-01
Chr04	irgsp1_rep	CDS	33840173	33840277	.	+	0	Parent=Os04t0663100-01
Chr04	irgsp1_rep	CDS	33841746	33842459	.	+	0	Parent=Os04t0663100-01
Chr04	irgsp1_rep	CDS	33842546	33842716	.	+	0	Parent=Os04t0663100-01
Chr04	irgsp1_rep	CDS	33843153	33843209	.	+	0	Parent=Os04t0663100-01
Chr04	irgsp1_rep	CDS	33843294	33844908	.	+	0	Parent=Os04t0663100-01
Chr04	irgsp1_rep	CDS	33845560	33845579	.	+	2	Parent=Os04t0663100-01
Chr04	irgsp1_rep	three_prime_UTR	33845580	33845901	.	+	.	Parent=Os04t0663100-01
Chr04	irgsp1_rep	mRNA	33848663	33850175	.	-	.	ID=Os04t0663200-01;Name=Os04t0663200-01;Locus_id=Os04g0663200;CGSNL Gene Symbol=C3H30;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 30;Oryzabase Gene Symbol Synonym(s)=OsC3H30;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 30;Note=Zinc finger%2C CCCH-type domain containing protein.;Transcript_evidence=AK105958 (DDBJ%2C Best hit);ORF_evidence=Q01K33 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=001-205-D09;Oryzabase=8595;Expression=AK105958;TENOR=Os04t0663200-01;KEGG=Os04t0663200-01
Chr04	irgsp1_rep	five_prime_UTR	33850175	33850175	.	-	.	Parent=Os04t0663200-01
Chr04	irgsp1_rep	CDS	33850133	33850174	.	-	0	Parent=Os04t0663200-01
Chr04	irgsp1_rep	CDS	33849923	33850047	.	-	0	Parent=Os04t0663200-01
Chr04	irgsp1_rep	CDS	33848823	33849837	.	-	1	Parent=Os04t0663200-01
Chr04	irgsp1_rep	three_prime_UTR	33848663	33848822	.	-	.	Parent=Os04t0663200-01
Chr04	irgsp1_rep	mRNA	33848655	33849821	.	-	.	ID=Os04t0663200-02;Name=Os04t0663200-02;Locus_id=Os04g0663200;CGSNL Gene Symbol=C3H30;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 30;Oryzabase Gene Symbol Synonym(s)=OsC3H30;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 30;Note=Similar to OSIGBa0099L20.3 protein.;Transcript_evidence=AK111925 (DDBJ%2C Best hit);ORF_evidence=Q01K33 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=001-014-C04;Oryzabase=8595;Expression=AK111925;TENOR=Os04t0663200-02;KEGG=Os04t0663200-02
Chr04	irgsp1_rep	CDS	33848823	33849821	.	-	0	Parent=Os04t0663200-02
Chr04	irgsp1_rep	three_prime_UTR	33848655	33848822	.	-	.	Parent=Os04t0663200-02
Chr04	irgsp1_rep	mRNA	33854490	33856500	.	-	.	ID=Os04t0663300-01;Name=Os04t0663300-01;Locus_id=Os04g0663300;Note=Similar to PHD finger-like domain protein 5A (Splicing factor 3B associated 14 kDa protein) (SF3b14b).;Transcript_evidence=AK242187 (DDBJ%2C Best hit);ORF_evidence=XP_002532111.1 (RefSeq);InterPro=PHF5-like (IPR005345);NIAS_FLcDNA=J075162F09;TENOR=Os04t0663300-01;KEGG=Os04t0663300-01
Chr04	irgsp1_rep	five_prime_UTR	33856339	33856500	.	-	.	Parent=Os04t0663300-01
Chr04	irgsp1_rep	five_prime_UTR	33855053	33855069	.	-	.	Parent=Os04t0663300-01
Chr04	irgsp1_rep	CDS	33854720	33855052	.	-	0	Parent=Os04t0663300-01
Chr04	irgsp1_rep	three_prime_UTR	33854490	33854719	.	-	.	Parent=Os04t0663300-01
Chr04	irgsp1_rep	mRNA	33856586	33859127	.	+	.	ID=Os04t0663500-00;Name=Os04t0663500-00;Locus_id=Os04g0663500;Note=Similar to OSIGBa0099L20.5 protein.;Transcript_evidence=EU971909 (DDBJ);ORF_evidence=Q01K31 (UniProt);TENOR=Os04t0663500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33856586	33856728	.	+	.	Parent=Os04t0663500-00
Chr04	irgsp1_rep	CDS	33856729	33856990	.	+	0	Parent=Os04t0663500-00
Chr04	irgsp1_rep	CDS	33857102	33857207	.	+	2	Parent=Os04t0663500-00
Chr04	irgsp1_rep	CDS	33858551	33858650	.	+	1	Parent=Os04t0663500-00
Chr04	irgsp1_rep	CDS	33858974	33859069	.	+	0	Parent=Os04t0663500-00
Chr04	irgsp1_rep	three_prime_UTR	33859070	33859127	.	+	.	Parent=Os04t0663500-00
Chr04	irgsp1_rep	mRNA	33860374	33861424	.	-	.	ID=Os04t0663600-01;Name=Os04t0663600-01;Locus_id=Os04g0663600;RAP-DB Gene Symbol Synonym(s)=WOX1%2C Os WUS%2C WUS%2C OsWOX1%2C OsWUS%2C TAB1%2C TAB1/WUS%2C MOC3%2C MOC3/OsWUS;RAP-DB Gene Name Synonym(s)=WUSCHEL-LIKE HOMEOBOX 1%2C WUSCHEL%2C WUSCHEL-related homeobox 1%2C WUS Orthologue%2C TILLERS ABSENT1%2C TILLERS ABSENT 1%2C MONOCULM 3;CGSNL Gene Symbol=WOX1;CGSNL Gene Name=WUSCHEL-LIKE HOMEOBOX 1;Oryzabase Gene Symbol Synonym(s)=Os WUS%2C WUS%2C OsWOX1%2C OsWUS%2C TAB1%2C TAB1/WUS%2C MOC3%2C MOC3/OsWUS%2C SRT1%2C MOC3/TAB1/SRT1;Oryzabase Gene Name Synonym(s)=WUSCHEL%2C WUSCHEL-related homeobox 1%2C WUS Orthologue%2C TILLERS ABSENT1%2C TILLERS ABSENT 1%2C MONOCULM 3;Note=Homeobox protein orthologous to Arabidopsis WUS%2C Initiation of axillary meristem formation;Transcript_evidence=AB218894 (Taichung 65),AM234746;ORF_evidence=Q33DK0,Q7XM13;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeodomain-like (IPR009057),Homeobox domain (IPR001356);Manual Curation=May 26%2C 2015;Literature_PMID=25841039,16987950,16284419;Oryzabase=12273;TENOR=Os04t0663600-00
Chr04	irgsp1_rep	CDS	33861040	33861424	.	-	0	Parent=Os04t0663600-01
Chr04	irgsp1_rep	CDS	33860817	33860938	.	-	2	Parent=Os04t0663600-01
Chr04	irgsp1_rep	CDS	33860374	33860736	.	-	0	Parent=Os04t0663600-01
Chr04	irgsp1_rep	mRNA	33869085	33872898	.	-	.	ID=Os04t0663700-01;Name=Os04t0663700-01;Locus_id=Os04g0663700;Note=Similar to OSIGBa0099L20.7 protein.;Transcript_evidence=AK068004 (DDBJ%2C Best hit);ORF_evidence=Q01K29 (UniProt);InterPro=TLDc (IPR006571);NIAS_FLcDNA=J013129G21;TENOR=Os04t0663700-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33872717	33872898	.	-	.	Parent=Os04t0663700-01
Chr04	irgsp1_rep	CDS	33871934	33872716	.	-	0	Parent=Os04t0663700-01
Chr04	irgsp1_rep	CDS	33870994	33871157	.	-	0	Parent=Os04t0663700-01
Chr04	irgsp1_rep	CDS	33870584	33870822	.	-	1	Parent=Os04t0663700-01
Chr04	irgsp1_rep	CDS	33870306	33870505	.	-	2	Parent=Os04t0663700-01
Chr04	irgsp1_rep	CDS	33869671	33869796	.	-	0	Parent=Os04t0663700-01
Chr04	irgsp1_rep	CDS	33869472	33869570	.	-	0	Parent=Os04t0663700-01
Chr04	irgsp1_rep	three_prime_UTR	33869085	33869471	.	-	.	Parent=Os04t0663700-01
Chr04	irgsp1_rep	mRNA	33873137	33875586	.	-	.	ID=Os04t0663800-01;Name=Os04t0663800-01;Locus_id=Os04g0663800;Note=Similar to Peptidyl-prolyl cis-trans isomerase 1 (EC 5.2.1.8) (Rotamase Pin1) (PPIase Pin1) (PIN1At).;Transcript_evidence=AK105321 (DDBJ%2C Best hit);ORF_evidence=E4MXN2 (UniProt);GO=Molecular Function: isomerase activity (GO:0016853);InterPro=Peptidyl-prolyl cis-trans isomerase%2C PpiC-type (IPR000297),Peptidyl-prolyl cis-trans isomerase%2C PpiC-type%2C conserved site (IPR023058);NIAS_FLcDNA=001-117-G07;Expression=AK105321;TENOR=Os04t0663800-01;KEGG=Os04t0663800-01 (EC:5.2.1.8)
Chr04	irgsp1_rep	five_prime_UTR	33875585	33875586	.	-	.	Parent=Os04t0663800-01
Chr04	irgsp1_rep	CDS	33875491	33875584	.	-	0	Parent=Os04t0663800-01
Chr04	irgsp1_rep	CDS	33873455	33873579	.	-	2	Parent=Os04t0663800-01
Chr04	irgsp1_rep	three_prime_UTR	33873137	33873454	.	-	.	Parent=Os04t0663800-01
Chr04	irgsp1_rep	mRNA	33885520	33887045	.	-	.	ID=Os04t0664300-01;Name=Os04t0664300-01;Locus_id=Os04g0664300;Note=Hypothetical protein.;Transcript_evidence=AK110837 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-172-B02;Expression=AK110837;TENOR=Os04t0664300-01;KEGG=Os04t0664300-01
Chr04	irgsp1_rep	five_prime_UTR	33886468	33887045	.	-	.	Parent=Os04t0664300-01
Chr04	irgsp1_rep	CDS	33886153	33886467	.	-	0	Parent=Os04t0664300-01
Chr04	irgsp1_rep	three_prime_UTR	33885520	33886152	.	-	.	Parent=Os04t0664300-01
Chr04	irgsp1_rep	mRNA	33888122	33894393	.	-	.	ID=Os04t0664400-01;Name=Os04t0664400-01;Locus_id=Os04g0664400;Oryzabase Gene Symbol Synonym(s)=OsMP%2C OsARF5%2C OsARF11%2C DLN125%2C OsDLN125%2C OsMP/OsARF11;Oryzabase Gene Name Synonym(s)=rice ortholog of Arabidopsis MONOPTEROS%2C OsMONOPTEROS%2C MONOPTEROS%2C auxin response factor-5%2C auxin response factor 5%2C auxin response factor-11%2C auxin response factor 11%2C DLN repressor 125%2C DLN motif protein 125;Note=Auxin response factor 1.;Transcript_evidence=AK103452 (DDBJ%2C Best hit);ORF_evidence=Q8S983 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: response to hormone stimulus (GO:0009725),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Transcriptional factor B3 (IPR003340),Auxin response factor (IPR010525),Aux/IAA-ARF-dimerisation (IPR011525),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=J033129I11;Oryzabase=9998;TENOR=Os04t0664400-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33893984	33894393	.	-	.	Parent=Os04t0664400-01
Chr04	irgsp1_rep	five_prime_UTR	33893209	33893336	.	-	.	Parent=Os04t0664400-01
Chr04	irgsp1_rep	CDS	33893118	33893208	.	-	0	Parent=Os04t0664400-01
Chr04	irgsp1_rep	CDS	33892896	33893008	.	-	2	Parent=Os04t0664400-01
Chr04	irgsp1_rep	CDS	33892648	33892746	.	-	0	Parent=Os04t0664400-01
Chr04	irgsp1_rep	CDS	33892511	33892567	.	-	0	Parent=Os04t0664400-01
Chr04	irgsp1_rep	CDS	33892171	33892326	.	-	0	Parent=Os04t0664400-01
Chr04	irgsp1_rep	CDS	33891999	33892083	.	-	0	Parent=Os04t0664400-01
Chr04	irgsp1_rep	CDS	33891799	33891889	.	-	2	Parent=Os04t0664400-01
Chr04	irgsp1_rep	CDS	33891199	33891363	.	-	1	Parent=Os04t0664400-01
Chr04	irgsp1_rep	CDS	33891000	33891119	.	-	1	Parent=Os04t0664400-01
Chr04	irgsp1_rep	CDS	33890621	33890696	.	-	1	Parent=Os04t0664400-01
Chr04	irgsp1_rep	CDS	33890399	33890534	.	-	0	Parent=Os04t0664400-01
Chr04	irgsp1_rep	CDS	33888946	33890324	.	-	2	Parent=Os04t0664400-01
Chr04	irgsp1_rep	CDS	33888649	33888843	.	-	0	Parent=Os04t0664400-01
Chr04	irgsp1_rep	three_prime_UTR	33888122	33888648	.	-	.	Parent=Os04t0664400-01
Chr04	irgsp1_rep	mRNA	33888004	33894247	.	-	.	ID=Os04t0664400-02;Name=Os04t0664400-02;Locus_id=Os04g0664400;RAP-DB Gene Symbol Synonym(s)=OsARF11%2C OsMP;RAP-DB Gene Name Synonym(s)=auxin response factor 11;Oryzabase Gene Symbol Synonym(s)=OsMP%2C OsARF5%2C OsARF11%2C DLN125%2C OsDLN125%2C OsMP/OsARF11;Oryzabase Gene Name Synonym(s)=rice ortholog of Arabidopsis MONOPTEROS%2C OsMONOPTEROS%2C MONOPTEROS%2C auxin response factor-5%2C auxin response factor 5%2C auxin response factor-11%2C auxin response factor 11%2C DLN repressor 125%2C DLN motif protein 125;Note=Auxin response factor%2C Transcriptional factor%2C Transcriptional regulation of plant height and leaf angle;Transcript_evidence=AK103105 (truncated),AB071292;ORF_evidence=Q8S983;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Biological Process: response to hormone (GO:0009725),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515),Cellular Component: nucleus (GO:0005634);InterPro=DNA-binding pseudobarrel domain superfamily (IPR015300),B3 DNA binding domain (IPR003340),Auxin response factor (IPR010525),AUX/IAA domain (IPR033389),PB1 domain (IPR000270);NIAS_FLcDNA=J033118O21 (truncated);Manual Curation=August 15%2C 2018;Literature_PMID=30084027,11922106;Oryzabase=9998;TENOR=Os04t0664400-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=nucleus (GO:0005634)
Chr04	irgsp1_rep	five_prime_UTR	33893984	33894247	.	-	.	Parent=Os04t0664400-02
Chr04	irgsp1_rep	five_prime_UTR	33893209	33893336	.	-	.	Parent=Os04t0664400-02
Chr04	irgsp1_rep	CDS	33893118	33893208	.	-	0	Parent=Os04t0664400-02
Chr04	irgsp1_rep	CDS	33892896	33893008	.	-	2	Parent=Os04t0664400-02
Chr04	irgsp1_rep	CDS	33892648	33892746	.	-	0	Parent=Os04t0664400-02
Chr04	irgsp1_rep	CDS	33892511	33892567	.	-	0	Parent=Os04t0664400-02
Chr04	irgsp1_rep	CDS	33892171	33892326	.	-	0	Parent=Os04t0664400-02
Chr04	irgsp1_rep	CDS	33891999	33892083	.	-	0	Parent=Os04t0664400-02
Chr04	irgsp1_rep	CDS	33891799	33891889	.	-	2	Parent=Os04t0664400-02
Chr04	irgsp1_rep	CDS	33891199	33891363	.	-	1	Parent=Os04t0664400-02
Chr04	irgsp1_rep	CDS	33891000	33891119	.	-	1	Parent=Os04t0664400-02
Chr04	irgsp1_rep	CDS	33890621	33890696	.	-	1	Parent=Os04t0664400-02
Chr04	irgsp1_rep	CDS	33890399	33890534	.	-	0	Parent=Os04t0664400-02
Chr04	irgsp1_rep	CDS	33888946	33890324	.	-	2	Parent=Os04t0664400-02
Chr04	irgsp1_rep	CDS	33888653	33888843	.	-	0	Parent=Os04t0664400-02
Chr04	irgsp1_rep	CDS	33888447	33888555	.	-	1	Parent=Os04t0664400-02
Chr04	irgsp1_rep	three_prime_UTR	33888004	33888446	.	-	.	Parent=Os04t0664400-02
Chr04	irgsp1_rep	mRNA	33925445	33927123	.	+	.	ID=Os04t0664500-01;Name=Os04t0664500-01;Locus_id=Os04g0664500;CGSNL Gene Symbol=AHT1;CGSNL Gene Name=AGMATINE HYDROXYCINNAMOYL TRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=Os-AHT1%2C OsAHT1;Oryzabase Gene Name Synonym(s)=agmatine hydroxycinnamoyl transferase 1;Note=Similar to H1005F08.2 protein.;Transcript_evidence=AK109743 (DDBJ%2C Best hit);ORF_evidence=Q01MP2 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=002-146-E07;Oryzabase=21070;TENOR=Os04t0664500-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33925445	33925550	.	+	.	Parent=Os04t0664500-01
Chr04	irgsp1_rep	CDS	33925551	33925928	.	+	0	Parent=Os04t0664500-01
Chr04	irgsp1_rep	three_prime_UTR	33925929	33927123	.	+	.	Parent=Os04t0664500-01
Chr04	irgsp1_rep	mRNA	33929184	33930533	.	-	.	ID=Os04t0664600-00;Name=Os04t0664600-00;Locus_id=Os04g0664600;Oryzabase Gene Name Synonym(s)=agmatine hydroxycinnamoyl acyltransferase%2C agmatine N-hydroxycinnamoyl- transferase%2C feruloylagmatine synthase;Note=Similar to H1005F08.3 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01MP1 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);Oryzabase=18241;TENOR=Os04t0664600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	33929184	33930533	.	-	0	Parent=Os04t0664600-00
Chr04	irgsp1_rep	mRNA	33929256	33930560	.	+	.	ID=Os04t0664666-00;Name=Os04t0664666-00;Locus_id=Os04g0664666;Note=Hypothetical protein.;Transcript_evidence=tplb0014h21 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0664666-00
Chr04	irgsp1_rep	five_prime_UTR	33929256	33929867	.	+	.	Parent=Os04t0664666-00
Chr04	irgsp1_rep	CDS	33929868	33930515	.	+	0	Parent=Os04t0664666-00
Chr04	irgsp1_rep	three_prime_UTR	33930516	33930560	.	+	.	Parent=Os04t0664666-00
Chr04	irgsp1_rep	mRNA	33940929	33943427	.	-	.	ID=Os04t0664800-00;Name=Os04t0664800-00;Locus_id=Os04g0664800;CGSNL Gene Symbol=CIN6;CGSNL Gene Name=CELL-WALL INVERTASE 6;Oryzabase Gene Symbol Synonym(s)=OsCIN6%2C OsCIN7%2C CIN7;Oryzabase Gene Name Synonym(s)=cell-wall invertase 6%2C cell-wall invertase 7;Note=Similar to Cell wall invertase (EC 3.2.1.26).;Transcript_evidence=AY578163 (DDBJ%2C Best hit);ORF_evidence=Q56UD0 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 32 (IPR001362),Concanavalin A-like lectin/glucanase (IPR008985),Glycosyl hydrolases family 32%2C N-terminal (IPR013148),Glycosyl hydrolase family 32%2C C-terminal (IPR013189),Glycosyl hydrolase family 43%2C five-bladed beta-propellor domain (IPR023296);Oryzabase=14290;TENOR=Os04t0664800-00;KEGG=Os04t0664800-00 (EC:3.2.1.26)
Chr04	irgsp1_rep	five_prime_UTR	33943362	33943427	.	-	.	Parent=Os04t0664800-00
Chr04	irgsp1_rep	CDS	33943208	33943361	.	-	0	Parent=Os04t0664800-00
Chr04	irgsp1_rep	CDS	33943054	33943062	.	-	2	Parent=Os04t0664800-00
Chr04	irgsp1_rep	CDS	33942049	33942941	.	-	2	Parent=Os04t0664800-00
Chr04	irgsp1_rep	CDS	33941545	33941948	.	-	0	Parent=Os04t0664800-00
Chr04	irgsp1_rep	CDS	33941315	33941408	.	-	1	Parent=Os04t0664800-00
Chr04	irgsp1_rep	CDS	33940998	33941234	.	-	0	Parent=Os04t0664800-00
Chr04	irgsp1_rep	three_prime_UTR	33940929	33940997	.	-	.	Parent=Os04t0664800-00
Chr04	irgsp1_rep	mRNA	33943991	33946513	.	-	.	ID=Os04t0664900-01;Name=Os04t0664900-01;Locus_id=Os04g0664900;CGSNL Gene Symbol=CIN5;CGSNL Gene Name=CELL-WALL INVERTASE 5;Oryzabase Gene Symbol Synonym(s)=OsCIN5%2C OsCIN6;Oryzabase Gene Name Synonym(s)=cell-wall invertase 5%2C cell-wall invertase 6;Note=Similar to H1005F08.5 protein.;Transcript_evidence=AK243269 (DDBJ%2C Best hit);ORF_evidence=Q01MN9 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 32 (IPR001362),Glycosyl hydrolases family 32%2C N-terminal (IPR013148),Glycosyl hydrolase family 43%2C five-bladed beta-propellor domain (IPR023296);NIAS_FLcDNA=J100049H19;Oryzabase=14289;TENOR=Os04t0664900-01;KEGG=Os04t0664900-01 (EC:3.2.1.26)
Chr04	irgsp1_rep	five_prime_UTR	33946487	33946513	.	-	.	Parent=Os04t0664900-01
Chr04	irgsp1_rep	CDS	33946405	33946486	.	-	0	Parent=Os04t0664900-01
Chr04	irgsp1_rep	CDS	33946266	33946274	.	-	2	Parent=Os04t0664900-01
Chr04	irgsp1_rep	CDS	33945138	33946011	.	-	2	Parent=Os04t0664900-01
Chr04	irgsp1_rep	CDS	33944971	33945049	.	-	1	Parent=Os04t0664900-01
Chr04	irgsp1_rep	three_prime_UTR	33944646	33944970	.	-	.	Parent=Os04t0664900-01
Chr04	irgsp1_rep	three_prime_UTR	33944448	33944541	.	-	.	Parent=Os04t0664900-01
Chr04	irgsp1_rep	three_prime_UTR	33943991	33944370	.	-	.	Parent=Os04t0664900-01
Chr04	irgsp1_rep	mRNA	33944194	33946012	.	+	.	ID=Os04t0664950-00;Name=Os04t0664950-00;Locus_id=Os04g0664950;Note=Hypothetical protein.;Transcript_evidence=tplb0057c18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0664950-00
Chr04	irgsp1_rep	five_prime_UTR	33944194	33944364	.	+	.	Parent=Os04t0664950-00
Chr04	irgsp1_rep	five_prime_UTR	33944440	33944532	.	+	.	Parent=Os04t0664950-00
Chr04	irgsp1_rep	five_prime_UTR	33944629	33944663	.	+	.	Parent=Os04t0664950-00
Chr04	irgsp1_rep	CDS	33944664	33945111	.	+	0	Parent=Os04t0664950-00
Chr04	irgsp1_rep	CDS	33945201	33946012	.	+	2	Parent=Os04t0664950-00
Chr04	irgsp1_rep	mRNA	33947318	33949741	.	+	.	ID=Os04t0665000-01;Name=Os04t0665000-01;Locus_id=Os04g0665000;Note=CHCH domain containing protein.;Transcript_evidence=AK062995 (DDBJ%2C Best hit);ORF_evidence=B9F7A0 (UniProt);InterPro=MTCP1 (IPR009069);NIAS_FLcDNA=001-109-G09;Expression=AK062995;TENOR=Os04t0665000-01;KEGG=Os04t0665000-01
Chr04	irgsp1_rep	five_prime_UTR	33947318	33947335	.	+	.	Parent=Os04t0665000-01
Chr04	irgsp1_rep	CDS	33947336	33947510	.	+	0	Parent=Os04t0665000-01
Chr04	irgsp1_rep	CDS	33947660	33947733	.	+	2	Parent=Os04t0665000-01
Chr04	irgsp1_rep	CDS	33949478	33949525	.	+	0	Parent=Os04t0665000-01
Chr04	irgsp1_rep	three_prime_UTR	33949526	33949741	.	+	.	Parent=Os04t0665000-01
Chr04	irgsp1_rep	mRNA	33950246	33952563	.	-	.	ID=Os04t0665200-01;Name=Os04t0665200-01;Locus_id=Os04g0665200;RAP-DB Gene Symbol Synonym(s)=IAMT1%2C OsIAMT1%2C OsSABATH4;RAP-DB Gene Name Synonym(s)=INDOL-3-ACETIC ACID METHYTRANSFERASE 1%2C Oryza sativa indole-3-acetic acid methyltransferase 1;CGSNL Gene Symbol=IAMT1;CGSNL Gene Name=INDOL-3-ACETIC ACID METHYTRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=OsIAMT1%2C OsSABATH4;Oryzabase Gene Name Synonym(s)=Oryza sativa indole-3-acetic acid methyltransferase 1;Note=SABATH family protein%2C IAA homeostasis;Transcript_evidence=EU375746 (Genbank),AK110936 (Genbank);ORF_evidence=Q0J998 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=SAM dependent carboxyl methyltransferase (IPR005299);Manual Curation=October 5%2C 2009;Literature_PMID=18162595;Oryzabase=7429;TENOR=Os04t0665200-01
Chr04	irgsp1_rep	five_prime_UTR	33952444	33952563	.	-	.	Parent=Os04t0665200-01
Chr04	irgsp1_rep	CDS	33952300	33952443	.	-	0	Parent=Os04t0665200-01
Chr04	irgsp1_rep	CDS	33950418	33951488	.	-	0	Parent=Os04t0665200-01
Chr04	irgsp1_rep	three_prime_UTR	33950246	33950417	.	-	.	Parent=Os04t0665200-01
Chr04	irgsp1_rep	mRNA	33963881	33966703	.	-	.	ID=Os04t0665400-01;Name=Os04t0665400-01;Locus_id=Os04g0665400;Oryzabase Gene Symbol Synonym(s)=FtsZ1%2C FtsZ%2C OsFtsZ1%2C OsFtsZ;Oryzabase Gene Name Synonym(s)=plastid division protein FtsZ1;Note=Similar to H1005F08.7 protein.;Transcript_evidence=AK105869 (DDBJ%2C Best hit),AK073455 (DDBJ%2C Best hit);ORF_evidence=Q94F85 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: microtubule-based process (GO:0007017),Biological Process: protein polymerization (GO:0051258),Cellular Component: cytoplasm (GO:0005737),Cellular Component: microtubule (GO:0005874),Cellular Component: protein complex (GO:0043234),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Cell division protein FtsZ (IPR000158),Tubulin/FtsZ%2C GTPase domain (IPR003008),Tubulin/FtsZ%2C C-terminal (IPR008280),Tubulin%2C conserved site (IPR017975),Tubulin/FtsZ%2C 2-layer sandwich domain (IPR018316),Cell division protein FtsZ%2C conserved site (IPR020805),Cell division protein FtsZ%2C C-terminal (IPR024757);NIAS_FLcDNA=001-204-A11,J033043N15;Oryzabase=9290;Expression=AK105869;TENOR=Os04t0665400-01;KEGG=Os04t0665400-01
Chr04	irgsp1_rep	five_prime_UTR	33966622	33966703	.	-	.	Parent=Os04t0665400-01
Chr04	irgsp1_rep	CDS	33966406	33966621	.	-	0	Parent=Os04t0665400-01
Chr04	irgsp1_rep	CDS	33965951	33966050	.	-	0	Parent=Os04t0665400-01
Chr04	irgsp1_rep	CDS	33965453	33965684	.	-	2	Parent=Os04t0665400-01
Chr04	irgsp1_rep	CDS	33964815	33964980	.	-	1	Parent=Os04t0665400-01
Chr04	irgsp1_rep	CDS	33964513	33964746	.	-	0	Parent=Os04t0665400-01
Chr04	irgsp1_rep	CDS	33964060	33964320	.	-	0	Parent=Os04t0665400-01
Chr04	irgsp1_rep	three_prime_UTR	33963881	33964059	.	-	.	Parent=Os04t0665400-01
Chr04	irgsp1_rep	mRNA	33963871	33966669	.	-	.	ID=Os04t0665400-02;Name=Os04t0665400-02;Locus_id=Os04g0665400;Oryzabase Gene Symbol Synonym(s)=FtsZ1%2C FtsZ%2C OsFtsZ1%2C OsFtsZ;Oryzabase Gene Name Synonym(s)=plastid division protein FtsZ1;Note=Similar to H1005F08.7 protein.;Transcript_evidence=AK103448 (DDBJ%2C Best hit);ORF_evidence=B7EYF6 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: microtubule-based process (GO:0007017),Biological Process: protein polymerization (GO:0051258),Cellular Component: cytoplasm (GO:0005737),Cellular Component: microtubule (GO:0005874),Cellular Component: protein complex (GO:0043234),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Cell division protein FtsZ (IPR000158),Tubulin/FtsZ%2C GTPase domain (IPR003008),Tubulin/FtsZ%2C C-terminal (IPR008280),Tubulin%2C conserved site (IPR017975),Tubulin/FtsZ%2C 2-layer sandwich domain (IPR018316),Cell division protein FtsZ%2C conserved site (IPR020805),Cell division protein FtsZ%2C C-terminal (IPR024757);NIAS_FLcDNA=J033129H18;Oryzabase=9290;Expression=AK073455;TENOR=Os04t0665400-02;KEGG=Os04t0665400-02;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33966622	33966669	.	-	.	Parent=Os04t0665400-02
Chr04	irgsp1_rep	CDS	33966406	33966621	.	-	0	Parent=Os04t0665400-02
Chr04	irgsp1_rep	CDS	33965951	33966050	.	-	0	Parent=Os04t0665400-02
Chr04	irgsp1_rep	CDS	33965453	33965684	.	-	2	Parent=Os04t0665400-02
Chr04	irgsp1_rep	CDS	33964815	33964980	.	-	1	Parent=Os04t0665400-02
Chr04	irgsp1_rep	CDS	33964513	33964746	.	-	0	Parent=Os04t0665400-02
Chr04	irgsp1_rep	CDS	33964060	33964320	.	-	0	Parent=Os04t0665400-02
Chr04	irgsp1_rep	three_prime_UTR	33963871	33964059	.	-	.	Parent=Os04t0665400-02
Chr04	irgsp1_rep	mRNA	33963664	33964230	.	-	.	ID=Os04t0665400-03;Name=Os04t0665400-03;Locus_id=Os04g0665400;Oryzabase Gene Symbol Synonym(s)=FtsZ1%2C FtsZ%2C OsFtsZ1%2C OsFtsZ;Oryzabase Gene Name Synonym(s)=plastid division protein FtsZ1;Note=Similar to H1005F08.7 protein.;Transcript_evidence=AK058568 (DDBJ%2C Best hit);ORF_evidence=Q94F85 (UniProt);NIAS_FLcDNA=001-017-E05;Oryzabase=9290;Expression=AK058568;TENOR=Os04t0665400-03;KEGG=Os04t0665400-03
Chr04	irgsp1_rep	CDS	33964060	33964230	.	-	0	Parent=Os04t0665400-03
Chr04	irgsp1_rep	three_prime_UTR	33963664	33964059	.	-	.	Parent=Os04t0665400-03
Chr04	irgsp1_rep	mRNA	33968605	33972525	.	+	.	ID=Os04t0665500-01;Name=Os04t0665500-01;Locus_id=Os04g0665500;Note=Similar to H1005F08.9 protein.;Transcript_evidence=AK066509 (DDBJ%2C Best hit);ORF_evidence=Q01MN5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=SWIB/MDM2 domain (IPR003121),SWIB domain (IPR019835);NIAS_FLcDNA=J013069K23;TENOR=Os04t0665500-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33968605	33968717	.	+	.	Parent=Os04t0665500-01
Chr04	irgsp1_rep	CDS	33968718	33969298	.	+	0	Parent=Os04t0665500-01
Chr04	irgsp1_rep	CDS	33970621	33970726	.	+	1	Parent=Os04t0665500-01
Chr04	irgsp1_rep	CDS	33970837	33971005	.	+	0	Parent=Os04t0665500-01
Chr04	irgsp1_rep	CDS	33971095	33971282	.	+	2	Parent=Os04t0665500-01
Chr04	irgsp1_rep	CDS	33971837	33971956	.	+	0	Parent=Os04t0665500-01
Chr04	irgsp1_rep	three_prime_UTR	33971957	33971973	.	+	.	Parent=Os04t0665500-01
Chr04	irgsp1_rep	three_prime_UTR	33972185	33972525	.	+	.	Parent=Os04t0665500-01
Chr04	irgsp1_rep	mRNA	33972765	33975729	.	-	.	ID=Os04t0665600-01;Name=Os04t0665600-01;Locus_id=Os04g0665600;RAP-DB Gene Symbol Synonym(s)=RLI1;RAP-DB Gene Name Synonym(s)=REGULATOR OF LEAF INCLINATION1;CGSNL Gene Symbol=RLI1;CGSNL Gene Name=REGULATOR OF LEAF INCLINATION1;Oryzabase Gene Symbol Synonym(s)=OsRLI1;Oryzabase Gene Name Synonym(s)=REGULATOR OF LEAF INCLINATION 1;Note=HTH_MYB-like transcription factor%2C Positive regulation of leaf inclination;Transcript_evidence=AK101951;ORF_evidence=Q0J995;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeobox-like domain superfamily (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930),Myb domain%2C plants (IPR006447),MYB-CC type transcription factor%2C LHEQLE-containing domain (IPR025756);NIAS_FLcDNA=J033075I07;Manual Curation=May 22%2C 2018;Literature_PMID=29610209;Oryzabase=22410;TENOR=Os04t0665600-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33975476	33975729	.	-	.	Parent=Os04t0665600-01
Chr04	irgsp1_rep	CDS	33974897	33975475	.	-	0	Parent=Os04t0665600-01
Chr04	irgsp1_rep	CDS	33974560	33974776	.	-	0	Parent=Os04t0665600-01
Chr04	irgsp1_rep	CDS	33974377	33974453	.	-	2	Parent=Os04t0665600-01
Chr04	irgsp1_rep	CDS	33974134	33974173	.	-	0	Parent=Os04t0665600-01
Chr04	irgsp1_rep	CDS	33973774	33973831	.	-	2	Parent=Os04t0665600-01
Chr04	irgsp1_rep	CDS	33973565	33973634	.	-	1	Parent=Os04t0665600-01
Chr04	irgsp1_rep	CDS	33973193	33973426	.	-	0	Parent=Os04t0665600-01
Chr04	irgsp1_rep	three_prime_UTR	33972765	33973192	.	-	.	Parent=Os04t0665600-01
Chr04	irgsp1_rep	mRNA	33981899	33982687	.	+	.	ID=Os04t0665666-01;Name=Os04t0665666-01;Locus_id=Os04g0665666;Note=Conserved hypothetical protein.;Transcript_evidence=AK242399 (DDBJ%2C Best hit);ORF_evidence=B9FD61 (UniProt);NIAS_FLcDNA=J080068D08;TENOR=Os04t0665666-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33981899	33981899	.	+	.	Parent=Os04t0665666-01
Chr04	irgsp1_rep	CDS	33981900	33982403	.	+	0	Parent=Os04t0665666-01
Chr04	irgsp1_rep	three_prime_UTR	33982404	33982687	.	+	.	Parent=Os04t0665666-01
Chr04	irgsp1_rep	mRNA	33982975	33986219	.	+	.	ID=Os04t0665700-01;Name=Os04t0665700-01;Locus_id=Os04g0665700;CGSNL Gene Symbol=C3H31;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 31;Oryzabase Gene Symbol Synonym(s)=OsC3H31;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 31;Note=K Homology%2C type 1%2C subgroup domain containing protein.;Transcript_evidence=AK121951 (DDBJ%2C Best hit);ORF_evidence=Q01MN3 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571),K Homology (IPR004087),K Homology%2C type 1 (IPR004088),K Homology%2C type 1%2C subgroup (IPR018111);NIAS_FLcDNA=J033107K04;Oryzabase=8596;Expression=AK121951;TENOR=Os04t0665700-01;KEGG=Os04t0665700-01
Chr04	irgsp1_rep	five_prime_UTR	33982975	33983096	.	+	.	Parent=Os04t0665700-01
Chr04	irgsp1_rep	CDS	33983097	33983178	.	+	0	Parent=Os04t0665700-01
Chr04	irgsp1_rep	CDS	33984134	33984194	.	+	2	Parent=Os04t0665700-01
Chr04	irgsp1_rep	CDS	33985137	33985923	.	+	1	Parent=Os04t0665700-01
Chr04	irgsp1_rep	three_prime_UTR	33985924	33986219	.	+	.	Parent=Os04t0665700-01
Chr04	irgsp1_rep	mRNA	33986389	33989378	.	+	.	ID=Os04t0665800-01;Name=Os04t0665800-01;Locus_id=Os04g0665800;Note=Similar to H1005F08.12 protein.;Transcript_evidence=AK061504 (DDBJ%2C Best hit);ORF_evidence=Q01MN2 (UniProt);GO=Cellular Component: chloroplast (GO:0009507),Molecular Function: structural molecule activity (GO:0005198);InterPro=Plastid lipid-associated protein/fibrillin conserved domain (IPR006843);NIAS_FLcDNA=006-309-E07;Expression=AK061504;TENOR=Os04t0665800-01;KEGG=Os04t0665800-01
Chr04	irgsp1_rep	five_prime_UTR	33986389	33986472	.	+	.	Parent=Os04t0665800-01
Chr04	irgsp1_rep	CDS	33986473	33986694	.	+	0	Parent=Os04t0665800-01
Chr04	irgsp1_rep	CDS	33987261	33987382	.	+	0	Parent=Os04t0665800-01
Chr04	irgsp1_rep	CDS	33987501	33987584	.	+	1	Parent=Os04t0665800-01
Chr04	irgsp1_rep	CDS	33987800	33987896	.	+	1	Parent=Os04t0665800-01
Chr04	irgsp1_rep	CDS	33988159	33988375	.	+	0	Parent=Os04t0665800-01
Chr04	irgsp1_rep	CDS	33988626	33988678	.	+	2	Parent=Os04t0665800-01
Chr04	irgsp1_rep	CDS	33989034	33989144	.	+	0	Parent=Os04t0665800-01
Chr04	irgsp1_rep	three_prime_UTR	33989145	33989378	.	+	.	Parent=Os04t0665800-01
Chr04	irgsp1_rep	mRNA	33986422	33989276	.	+	.	ID=Os04t0665800-02;Name=Os04t0665800-02;Locus_id=Os04g0665800;Note=Similar to H1005F08.12 protein.;Transcript_evidence=AK101970 (DDBJ%2C Best hit);ORF_evidence=Q01MN2 (UniProt);GO=Cellular Component: chloroplast (GO:0009507),Molecular Function: structural molecule activity (GO:0005198);InterPro=Plastid lipid-associated protein/fibrillin conserved domain (IPR006843);NIAS_FLcDNA=J033076K20;Expression=AK101970;TENOR=Os04t0665800-02;KEGG=Os04t0665800-02
Chr04	irgsp1_rep	five_prime_UTR	33986422	33986472	.	+	.	Parent=Os04t0665800-02
Chr04	irgsp1_rep	CDS	33986473	33986694	.	+	0	Parent=Os04t0665800-02
Chr04	irgsp1_rep	CDS	33987261	33987382	.	+	0	Parent=Os04t0665800-02
Chr04	irgsp1_rep	CDS	33987501	33987584	.	+	1	Parent=Os04t0665800-02
Chr04	irgsp1_rep	CDS	33987800	33987896	.	+	1	Parent=Os04t0665800-02
Chr04	irgsp1_rep	CDS	33988159	33988375	.	+	0	Parent=Os04t0665800-02
Chr04	irgsp1_rep	CDS	33988626	33988678	.	+	2	Parent=Os04t0665800-02
Chr04	irgsp1_rep	CDS	33989034	33989144	.	+	0	Parent=Os04t0665800-02
Chr04	irgsp1_rep	three_prime_UTR	33989145	33989276	.	+	.	Parent=Os04t0665800-02
Chr04	irgsp1_rep	mRNA	33986460	33989930	.	+	.	ID=Os04t0665800-03;Name=Os04t0665800-03;Locus_id=Os04g0665800;Note=Similar to H1005F08.12 protein.;Transcript_evidence=AK107564 (DDBJ%2C Best hit);ORF_evidence=Q01MN2 (UniProt);NIAS_FLcDNA=002-130-C06;TENOR=Os04t0665800-03;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	33986460	33986472	.	+	.	Parent=Os04t0665800-03
Chr04	irgsp1_rep	CDS	33986473	33986694	.	+	0	Parent=Os04t0665800-03
Chr04	irgsp1_rep	CDS	33987261	33987386	.	+	0	Parent=Os04t0665800-03
Chr04	irgsp1_rep	three_prime_UTR	33987387	33987584	.	+	.	Parent=Os04t0665800-03
Chr04	irgsp1_rep	three_prime_UTR	33987800	33987896	.	+	.	Parent=Os04t0665800-03
Chr04	irgsp1_rep	three_prime_UTR	33988159	33988375	.	+	.	Parent=Os04t0665800-03
Chr04	irgsp1_rep	three_prime_UTR	33988626	33988678	.	+	.	Parent=Os04t0665800-03
Chr04	irgsp1_rep	three_prime_UTR	33989034	33989633	.	+	.	Parent=Os04t0665800-03
Chr04	irgsp1_rep	three_prime_UTR	33989734	33989930	.	+	.	Parent=Os04t0665800-03
Chr04	irgsp1_rep	mRNA	33990056	33990556	.	-	.	ID=Os04t0665900-00;Name=Os04t0665900-00;Locus_id=Os04g0665900;Oryzabase Gene Symbol Synonym(s)=OsVQ17;Oryzabase Gene Name Synonym(s)=VQ motif-containing protein 17;Note=Similar to H1005F08.13 protein.;Transcript_evidence=FP097147 (DDBJ);ORF_evidence=Q01MN1 (UniProt);InterPro=VQ (IPR008889);Oryzabase=13633;TENOR=Os04t0665900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	33990086	33990556	.	-	0	Parent=Os04t0665900-00
Chr04	irgsp1_rep	three_prime_UTR	33990056	33990085	.	-	.	Parent=Os04t0665900-00
Chr04	irgsp1_rep	mRNA	34038375	34039430	.	-	.	ID=Os04t0666800-01;Name=Os04t0666800-01;Locus_id=Os04g0666800;Note=Similar to H1005F08.21 protein.;Transcript_evidence=AK107902 (DDBJ%2C Best hit);ORF_evidence=Q01MM3 (UniProt);InterPro=Plant disease resistance response protein (IPR004265);NIAS_FLcDNA=002-134-F09;TENOR=Os04t0666800-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34039400	34039430	.	-	.	Parent=Os04t0666800-01
Chr04	irgsp1_rep	CDS	34039242	34039399	.	-	0	Parent=Os04t0666800-01
Chr04	irgsp1_rep	CDS	34038607	34038958	.	-	1	Parent=Os04t0666800-01
Chr04	irgsp1_rep	three_prime_UTR	34038375	34038606	.	-	.	Parent=Os04t0666800-01
Chr04	irgsp1_rep	mRNA	34040123	34048308	.	-	.	ID=Os04t0666900-01;Name=Os04t0666900-01;Locus_id=Os04g0666900;Oryzabase Gene Symbol Synonym(s)=OsKCBP%2C KCBP;Oryzabase Gene Name Synonym(s)=kinesin-like calmodulin-binding protein;Note=Similar to H1005F08.22 protein.;Transcript_evidence=AK073209 (DDBJ%2C Best hit);ORF_evidence=Q01MM2 (UniProt);GO=Biological Process: microtubule-based movement (GO:0007018),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: cytoskeleton (GO:0005856),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: catalytic activity (GO:0003824),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FERM domain (IPR000299),MyTH4 domain (IPR000857),Kinesin%2C motor domain (IPR001752),Prismane-like (IPR011254),FERM/acyl-CoA-binding protein%2C 3-helical bundle (IPR014352),FERM%2C N-terminal (IPR018979),FERM central domain (IPR019748),Band 4.1 domain (IPR019749),Kinesin%2C motor region%2C conserved site (IPR019821);NIAS_FLcDNA=J033009N20;Oryzabase=22347;Expression=AK073209;TENOR=Os04t0666900-01;KEGG=Os04t0666900-01
Chr04	irgsp1_rep	five_prime_UTR	34048308	34048308	.	-	.	Parent=Os04t0666900-01
Chr04	irgsp1_rep	CDS	34048176	34048307	.	-	0	Parent=Os04t0666900-01
Chr04	irgsp1_rep	CDS	34047802	34048031	.	-	0	Parent=Os04t0666900-01
Chr04	irgsp1_rep	CDS	34047397	34047724	.	-	1	Parent=Os04t0666900-01
Chr04	irgsp1_rep	CDS	34046639	34046738	.	-	0	Parent=Os04t0666900-01
Chr04	irgsp1_rep	CDS	34046365	34046546	.	-	2	Parent=Os04t0666900-01
Chr04	irgsp1_rep	CDS	34046151	34046266	.	-	0	Parent=Os04t0666900-01
Chr04	irgsp1_rep	CDS	34045928	34046030	.	-	1	Parent=Os04t0666900-01
Chr04	irgsp1_rep	CDS	34045472	34045624	.	-	0	Parent=Os04t0666900-01
Chr04	irgsp1_rep	CDS	34045246	34045392	.	-	0	Parent=Os04t0666900-01
Chr04	irgsp1_rep	CDS	34044973	34045173	.	-	0	Parent=Os04t0666900-01
Chr04	irgsp1_rep	CDS	34044073	34044237	.	-	0	Parent=Os04t0666900-01
Chr04	irgsp1_rep	CDS	34043866	34044009	.	-	0	Parent=Os04t0666900-01
Chr04	irgsp1_rep	CDS	34043597	34043737	.	-	0	Parent=Os04t0666900-01
Chr04	irgsp1_rep	CDS	34043295	34043489	.	-	0	Parent=Os04t0666900-01
Chr04	irgsp1_rep	CDS	34043084	34043210	.	-	0	Parent=Os04t0666900-01
Chr04	irgsp1_rep	CDS	34042794	34042996	.	-	2	Parent=Os04t0666900-01
Chr04	irgsp1_rep	CDS	34042515	34042697	.	-	0	Parent=Os04t0666900-01
Chr04	irgsp1_rep	CDS	34042289	34042384	.	-	0	Parent=Os04t0666900-01
Chr04	irgsp1_rep	CDS	34041608	34041805	.	-	0	Parent=Os04t0666900-01
Chr04	irgsp1_rep	CDS	34040703	34040974	.	-	0	Parent=Os04t0666900-01
Chr04	irgsp1_rep	CDS	34040403	34040595	.	-	1	Parent=Os04t0666900-01
Chr04	irgsp1_rep	three_prime_UTR	34040123	34040402	.	-	.	Parent=Os04t0666900-01
Chr04	irgsp1_rep	mRNA	34040145	34042852	.	-	.	ID=Os04t0666900-02;Name=Os04t0666900-02;Locus_id=Os04g0666900;Oryzabase Gene Symbol Synonym(s)=OsKCBP%2C KCBP;Oryzabase Gene Name Synonym(s)=kinesin-like calmodulin-binding protein;Note=Similar to H1005F08.22 protein.;Transcript_evidence=AK073001 (DDBJ%2C Best hit);ORF_evidence=Q01MM2 (UniProt);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752),Kinesin%2C motor region%2C conserved site (IPR019821);NIAS_FLcDNA=J033000C17;Oryzabase=22347;Expression=AK073001;TENOR=Os04t0666900-02;KEGG=Os04t0666900-02
Chr04	irgsp1_rep	five_prime_UTR	34042851	34042852	.	-	.	Parent=Os04t0666900-02
Chr04	irgsp1_rep	CDS	34042794	34042850	.	-	0	Parent=Os04t0666900-02
Chr04	irgsp1_rep	CDS	34042515	34042697	.	-	0	Parent=Os04t0666900-02
Chr04	irgsp1_rep	CDS	34042289	34042384	.	-	0	Parent=Os04t0666900-02
Chr04	irgsp1_rep	CDS	34041608	34041805	.	-	0	Parent=Os04t0666900-02
Chr04	irgsp1_rep	CDS	34040703	34040974	.	-	0	Parent=Os04t0666900-02
Chr04	irgsp1_rep	CDS	34040403	34040595	.	-	1	Parent=Os04t0666900-02
Chr04	irgsp1_rep	three_prime_UTR	34040145	34040402	.	-	.	Parent=Os04t0666900-02
Chr04	irgsp1_rep	mRNA	34054318	34058149	.	-	.	ID=Os04t0667000-01;Name=Os04t0667000-01;Locus_id=Os04g0667000;Note=Tafazzin family protein.;Transcript_evidence=AK069874 (DDBJ%2C Best hit);ORF_evidence=XP_002887753.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Tafazzin (IPR000872),Phospholipid/glycerol acyltransferase (IPR002123);NIAS_FLcDNA=J023035P22;Expression=AK069874;TENOR=Os04t0667000-01;KEGG=Os04t0667000-01
Chr04	irgsp1_rep	five_prime_UTR	34058103	34058149	.	-	.	Parent=Os04t0667000-01
Chr04	irgsp1_rep	CDS	34057852	34058102	.	-	0	Parent=Os04t0667000-01
Chr04	irgsp1_rep	CDS	34056535	34056662	.	-	1	Parent=Os04t0667000-01
Chr04	irgsp1_rep	CDS	34055609	34055694	.	-	2	Parent=Os04t0667000-01
Chr04	irgsp1_rep	CDS	34055464	34055472	.	-	0	Parent=Os04t0667000-01
Chr04	irgsp1_rep	three_prime_UTR	34055354	34055463	.	-	.	Parent=Os04t0667000-01
Chr04	irgsp1_rep	three_prime_UTR	34054318	34054914	.	-	.	Parent=Os04t0667000-01
Chr04	irgsp1_rep	mRNA	34054332	34056607	.	+	.	ID=Os04t0667033-00;Name=Os04t0667033-00;Locus_id=Os04g0667033;Note=Non-protein coding transcript.;Transcript_evidence=BT018595 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0667033-00
Chr04	irgsp1_rep	exon	34054332	34054924	.	+	.	Parent=Os04t0667033-00
Chr04	irgsp1_rep	exon	34055364	34055493	.	+	.	Parent=Os04t0667033-00
Chr04	irgsp1_rep	exon	34055613	34055696	.	+	.	Parent=Os04t0667033-00
Chr04	irgsp1_rep	exon	34056539	34056607	.	+	.	Parent=Os04t0667033-00
Chr04	irgsp1_rep	mRNA	34059046	34064139	.	-	.	ID=Os04t0667100-01;Name=Os04t0667100-01;Locus_id=Os04g0667100;Note=Hypothetical protein.;Transcript_evidence=AK073700 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033058I11;Expression=AK073700;TENOR=Os04t0667100-01;KEGG=Os04t0667100-01
Chr04	irgsp1_rep	five_prime_UTR	34063852	34064139	.	-	.	Parent=Os04t0667100-01
Chr04	irgsp1_rep	five_prime_UTR	34060077	34061579	.	-	.	Parent=Os04t0667100-01
Chr04	irgsp1_rep	five_prime_UTR	34059906	34059971	.	-	.	Parent=Os04t0667100-01
Chr04	irgsp1_rep	CDS	34059645	34059905	.	-	0	Parent=Os04t0667100-01
Chr04	irgsp1_rep	three_prime_UTR	34059046	34059644	.	-	.	Parent=Os04t0667100-01
Chr04	irgsp1_rep	mRNA	34059026	34064114	.	-	.	ID=Os04t0667100-02;Name=Os04t0667100-02;Locus_id=Os04g0667100;Note=Hypothetical protein.;Transcript_evidence=AK098957 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013067B02;TENOR=Os04t0667100-02
Chr04	irgsp1_rep	five_prime_UTR	34063852	34064114	.	-	.	Parent=Os04t0667100-02
Chr04	irgsp1_rep	five_prime_UTR	34060077	34061579	.	-	.	Parent=Os04t0667100-02
Chr04	irgsp1_rep	five_prime_UTR	34059906	34059971	.	-	.	Parent=Os04t0667100-02
Chr04	irgsp1_rep	CDS	34059645	34059905	.	-	0	Parent=Os04t0667100-02
Chr04	irgsp1_rep	three_prime_UTR	34059026	34059644	.	-	.	Parent=Os04t0667100-02
Chr04	irgsp1_rep	mRNA	34060040	34063474	.	+	.	ID=Os04t0667200-01;Name=Os04t0667200-01;Locus_id=Os04g0667200;CGSNL Gene Symbol=F3H3;CGSNL Gene Name=FLAVANONE 3-HYDROXYLASE 3;Oryzabase Gene Symbol Synonym(s)=OsF3H-3%2C F3H-3%2C OsF3H3;Oryzabase Gene Name Synonym(s)=Flavanone 3-hydroxylase 3;Note=Similar to H1005F08.24 protein.;Transcript_evidence=AK241569 (DDBJ%2C Best hit);ORF_evidence=Q01MM0 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=J065179J10;Oryzabase=20380;TENOR=Os04t0667200-01;KEGG=Os04t0667200-01
Chr04	irgsp1_rep	five_prime_UTR	34060040	34060109	.	+	.	Parent=Os04t0667200-01
Chr04	irgsp1_rep	CDS	34060110	34060280	.	+	0	Parent=Os04t0667200-01
Chr04	irgsp1_rep	CDS	34061511	34061747	.	+	0	Parent=Os04t0667200-01
Chr04	irgsp1_rep	CDS	34061854	34062426	.	+	0	Parent=Os04t0667200-01
Chr04	irgsp1_rep	three_prime_UTR	34062427	34062440	.	+	.	Parent=Os04t0667200-01
Chr04	irgsp1_rep	three_prime_UTR	34063162	34063474	.	+	.	Parent=Os04t0667200-01
Chr04	irgsp1_rep	mRNA	34065589	34069859	.	+	.	ID=Os04t0667300-01;Name=Os04t0667300-01;Locus_id=Os04g0667300;Note=Hypothetical protein.;Transcript_evidence=AK107107 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-122-A12;TENOR=Os04t0667300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34065589	34065698	.	+	.	Parent=Os04t0667300-01
Chr04	irgsp1_rep	five_prime_UTR	34067948	34068370	.	+	.	Parent=Os04t0667300-01
Chr04	irgsp1_rep	five_prime_UTR	34068567	34069225	.	+	.	Parent=Os04t0667300-01
Chr04	irgsp1_rep	CDS	34069226	34069859	.	+	0	Parent=Os04t0667300-01
Chr04	irgsp1_rep	mRNA	34067654	34070800	.	-	.	ID=Os04t0667400-01;Name=Os04t0667400-01;Locus_id=Os04g0667400;RAP-DB Gene Symbol Synonym(s)=M2H%2C 2-ODD 21;RAP-DB Gene Name Synonym(s)=Melatonin 2-hydroxylase%2C 2-oxoglutarate-dependent dioxygenase 21;Oryzabase Gene Symbol Synonym(s)=OsSTA135%2C STA135%2C OsODD21%2C ODD21%2C 2-ODD21%2C Os2-ODD21%2C Os2ODD21%2C M2H%2C OsM2H;Oryzabase Gene Name Synonym(s)=2-oxoglutarate-dependent dioxygenase 21%2C Melatonin 2-Hydroxylase;Note=Melatonin 2-hydroxylase%2C Control of the melatonin level in plants;Transcript_evidence=AK119413;ORF_evidence=Q7XR83;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Isopenicillin N synthase-like (IPR027443),Non-haem dioxygenase N-terminal domain (IPR026992),Oxoglutarate/iron-dependent dioxygenase (IPR005123);NIAS_FLcDNA=001-132-F11;Manual Curation=October 24%2C 2019;Literature_PMID=31597397,25728912;Oryzabase=19424;Expression=AK119413;TENOR=Os04t0667400-01;KEGG=Os04t0667400-01
Chr04	irgsp1_rep	five_prime_UTR	34069308	34070800	.	-	.	Parent=Os04t0667400-01
Chr04	irgsp1_rep	CDS	34069125	34069307	.	-	0	Parent=Os04t0667400-01
Chr04	irgsp1_rep	CDS	34068572	34068810	.	-	0	Parent=Os04t0667400-01
Chr04	irgsp1_rep	CDS	34067885	34068464	.	-	1	Parent=Os04t0667400-01
Chr04	irgsp1_rep	three_prime_UTR	34067654	34067884	.	-	.	Parent=Os04t0667400-01
Chr04	irgsp1_rep	mRNA	34073167	34077291	.	-	.	ID=Os04t0667500-01;Name=Os04t0667500-01;Locus_id=Os04g0667500;CGSNL Gene Symbol=UCH5;CGSNL Gene Name=UBIQUITIN C-TERMINAL HYDROLASE 5;Oryzabase Gene Symbol Synonym(s)=OsUCH5;Oryzabase Gene Name Synonym(s)=ubiquitin C-terminal hydrolase 5;Note=Similar to Candida glabrata strain CBS138 Chromosome C complete sequence.;Transcript_evidence=AK103595 (DDBJ%2C Best hit);ORF_evidence=Q01ML8 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Cellular Component: intracellular (GO:0005622),Molecular Function: ubiquitin thiolesterase activity (GO:0004221);InterPro=Peptidase C12%2C ubiquitin carboxyl-terminal hydrolase 1 (IPR001578);NIAS_FLcDNA=J033133D22;Oryzabase=22863;Expression=AK103595;TENOR=Os04t0667500-01;KEGG=Os04t0667500-01 (EC:3.4.19.12)
Chr04	irgsp1_rep	five_prime_UTR	34077235	34077291	.	-	.	Parent=Os04t0667500-01
Chr04	irgsp1_rep	CDS	34077139	34077234	.	-	0	Parent=Os04t0667500-01
Chr04	irgsp1_rep	CDS	34076853	34077035	.	-	0	Parent=Os04t0667500-01
Chr04	irgsp1_rep	three_prime_UTR	34075648	34076852	.	-	.	Parent=Os04t0667500-01
Chr04	irgsp1_rep	three_prime_UTR	34075509	34075567	.	-	.	Parent=Os04t0667500-01
Chr04	irgsp1_rep	three_prime_UTR	34075340	34075414	.	-	.	Parent=Os04t0667500-01
Chr04	irgsp1_rep	three_prime_UTR	34074836	34074884	.	-	.	Parent=Os04t0667500-01
Chr04	irgsp1_rep	three_prime_UTR	34074671	34074747	.	-	.	Parent=Os04t0667500-01
Chr04	irgsp1_rep	three_prime_UTR	34074249	34074462	.	-	.	Parent=Os04t0667500-01
Chr04	irgsp1_rep	three_prime_UTR	34073872	34073961	.	-	.	Parent=Os04t0667500-01
Chr04	irgsp1_rep	three_prime_UTR	34073577	34073779	.	-	.	Parent=Os04t0667500-01
Chr04	irgsp1_rep	three_prime_UTR	34073167	34073240	.	-	.	Parent=Os04t0667500-01
Chr04	irgsp1_rep	mRNA	34081143	34081905	.	+	.	ID=Os04t0667600-01;Name=Os04t0667600-01;Locus_id=Os04g0667600;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK068657 (DDBJ%2C Best hit);ORF_evidence=Q7XR81 (UniProt);NIAS_FLcDNA=J013163L17;Expression=AK068657;TENOR=Os04t0667600-01;KEGG=Os04t0667600-01
Chr04	irgsp1_rep	five_prime_UTR	34081143	34081192	.	+	.	Parent=Os04t0667600-01
Chr04	irgsp1_rep	CDS	34081193	34081543	.	+	0	Parent=Os04t0667600-01
Chr04	irgsp1_rep	three_prime_UTR	34081544	34081905	.	+	.	Parent=Os04t0667600-01
Chr04	irgsp1_rep	mRNA	34083436	34087516	.	+	.	ID=Os04t0667700-01;Name=Os04t0667700-01;Locus_id=Os04g0667700;Oryzabase Gene Symbol Synonym(s)=OsFbox236%2C Os_F0264;Oryzabase Gene Name Synonym(s)=F-box protein 236;Note=Similar to Actin-related protein 8A.;Transcript_evidence=AK100366 (DDBJ%2C Best hit);ORF_evidence=A8WAZ9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Actin-like (IPR004000),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023083O16;Oryzabase=17022;Expression=AK100366;TENOR=Os04t0667700-01;KEGG=Os04t0667700-01
Chr04	irgsp1_rep	five_prime_UTR	34083436	34083572	.	+	.	Parent=Os04t0667700-01
Chr04	irgsp1_rep	CDS	34083573	34083928	.	+	0	Parent=Os04t0667700-01
Chr04	irgsp1_rep	CDS	34084029	34084114	.	+	1	Parent=Os04t0667700-01
Chr04	irgsp1_rep	CDS	34084423	34084493	.	+	2	Parent=Os04t0667700-01
Chr04	irgsp1_rep	CDS	34084653	34084727	.	+	0	Parent=Os04t0667700-01
Chr04	irgsp1_rep	three_prime_UTR	34084728	34085303	.	+	.	Parent=Os04t0667700-01
Chr04	irgsp1_rep	three_prime_UTR	34085741	34085822	.	+	.	Parent=Os04t0667700-01
Chr04	irgsp1_rep	three_prime_UTR	34086131	34086273	.	+	.	Parent=Os04t0667700-01
Chr04	irgsp1_rep	three_prime_UTR	34086429	34086577	.	+	.	Parent=Os04t0667700-01
Chr04	irgsp1_rep	three_prime_UTR	34086657	34086790	.	+	.	Parent=Os04t0667700-01
Chr04	irgsp1_rep	three_prime_UTR	34086910	34087028	.	+	.	Parent=Os04t0667700-01
Chr04	irgsp1_rep	three_prime_UTR	34087122	34087516	.	+	.	Parent=Os04t0667700-01
Chr04	irgsp1_rep	mRNA	34088171	34090534	.	-	.	ID=Os04t0667800-01;Name=Os04t0667800-01;Locus_id=Os04g0667800;Oryzabase Gene Symbol Synonym(s)=Dhr6%2C OsUBC5b%2C OsUBC16%2C UBC16;Oryzabase Gene Name Synonym(s)=RAD6 DNA-repair homolog Dhr6%2C Ubiquitin-conjugation enzyme%2C Ubiquitin-conjugating enzyme 16;Note=Ubiquitin-conjugating enzyme (EC 6.3.2.19) (Ubiquitin carrier protein).;Transcript_evidence=AK119682 (DDBJ%2C Best hit);ORF_evidence=A3AYE9 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135),Ubiquitin-conjugating enzyme%2C active site (IPR023313);NIAS_FLcDNA=002-157-A01;Oryzabase=17654;Expression=AK119682;TENOR=Os04t0667800-01;KEGG=Os04t0667800-01 (EC:6.3.2.19)
Chr04	irgsp1_rep	five_prime_UTR	34090389	34090534	.	-	.	Parent=Os04t0667800-01
Chr04	irgsp1_rep	five_prime_UTR	34090269	34090278	.	-	.	Parent=Os04t0667800-01
Chr04	irgsp1_rep	CDS	34090199	34090268	.	-	0	Parent=Os04t0667800-01
Chr04	irgsp1_rep	CDS	34089074	34089201	.	-	2	Parent=Os04t0667800-01
Chr04	irgsp1_rep	CDS	34088626	34088730	.	-	0	Parent=Os04t0667800-01
Chr04	irgsp1_rep	CDS	34088401	34088544	.	-	0	Parent=Os04t0667800-01
Chr04	irgsp1_rep	three_prime_UTR	34088171	34088400	.	-	.	Parent=Os04t0667800-01
Chr04	irgsp1_rep	mRNA	34088171	34089241	.	-	.	ID=Os04t0667800-02;Name=Os04t0667800-02;Locus_id=Os04g0667800;Oryzabase Gene Symbol Synonym(s)=Dhr6%2C OsUBC5b%2C OsUBC16%2C UBC16;Oryzabase Gene Name Synonym(s)=RAD6 DNA-repair homolog Dhr6%2C Ubiquitin-conjugation enzyme%2C Ubiquitin-conjugating enzyme 16;Note=Similar to Ubiquitin carrier protein.;Transcript_evidence=AK060954 (DDBJ%2C Best hit),AK104783 (DDBJ%2C Best hit);ORF_evidence=A3AYE9 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135),Ubiquitin-conjugating enzyme%2C active site (IPR023313);NIAS_FLcDNA=006-201-G05,001-039-D03;Oryzabase=17654;TENOR=Os04t0667800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34088824	34089241	.	-	.	Parent=Os04t0667800-02
Chr04	irgsp1_rep	CDS	34088605	34088823	.	-	0	Parent=Os04t0667800-02
Chr04	irgsp1_rep	three_prime_UTR	34088171	34088604	.	-	.	Parent=Os04t0667800-02
Chr04	irgsp1_rep	mRNA	34088390	34090279	.	+	.	ID=Os04t0667850-00;Name=Os04t0667850-00;Locus_id=Os04g0667850;Note=Non-protein coding transcript.;Transcript_evidence=BT086907 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0667850-00
Chr04	irgsp1_rep	exon	34088390	34088541	.	+	.	Parent=Os04t0667850-00
Chr04	irgsp1_rep	exon	34088623	34088716	.	+	.	Parent=Os04t0667850-00
Chr04	irgsp1_rep	exon	34089062	34089199	.	+	.	Parent=Os04t0667850-00
Chr04	irgsp1_rep	exon	34090197	34090279	.	+	.	Parent=Os04t0667850-00
Chr04	irgsp1_rep	mRNA	34091668	34095309	.	+	.	ID=Os04t0667900-01;Name=Os04t0667900-01;Locus_id=Os04g0667900;Note=Regulatory protein RecX family protein.;Transcript_evidence=AK072864 (DDBJ%2C Best hit);ORF_evidence=B6TKG2 (UniProt);GO=Biological Process: regulation of DNA repair (GO:0006282);InterPro=Regulatory protein RecX (IPR003783);NIAS_FLcDNA=J023143D08;Expression=AK072864;TENOR=Os04t0667900-01;KEGG=Os04t0667900-01
Chr04	irgsp1_rep	five_prime_UTR	34091668	34091726	.	+	.	Parent=Os04t0667900-01
Chr04	irgsp1_rep	CDS	34091727	34091830	.	+	0	Parent=Os04t0667900-01
Chr04	irgsp1_rep	CDS	34091921	34091985	.	+	1	Parent=Os04t0667900-01
Chr04	irgsp1_rep	CDS	34092074	34092281	.	+	2	Parent=Os04t0667900-01
Chr04	irgsp1_rep	CDS	34093015	34093107	.	+	1	Parent=Os04t0667900-01
Chr04	irgsp1_rep	CDS	34093498	34093585	.	+	1	Parent=Os04t0667900-01
Chr04	irgsp1_rep	CDS	34093984	34094256	.	+	0	Parent=Os04t0667900-01
Chr04	irgsp1_rep	three_prime_UTR	34094645	34095309	.	+	.	Parent=Os04t0667900-01
Chr04	irgsp1_rep	mRNA	34091670	34094484	.	+	.	ID=Os04t0667900-02;Name=Os04t0667900-02;Locus_id=Os04g0667900;Note=Similar to regulatory protein RecX.;Transcript_evidence=AK102493 (DDBJ%2C Best hit);ORF_evidence=B6TKG2 (UniProt);GO=Biological Process: regulation of DNA repair (GO:0006282);InterPro=Regulatory protein RecX (IPR003783);NIAS_FLcDNA=J033094P21;Expression=AK102493;TENOR=Os04t0667900-02;KEGG=Os04t0667900-02
Chr04	irgsp1_rep	five_prime_UTR	34091670	34091830	.	+	.	Parent=Os04t0667900-02
Chr04	irgsp1_rep	five_prime_UTR	34091921	34091985	.	+	.	Parent=Os04t0667900-02
Chr04	irgsp1_rep	five_prime_UTR	34092074	34092979	.	+	.	Parent=Os04t0667900-02
Chr04	irgsp1_rep	CDS	34092980	34093107	.	+	0	Parent=Os04t0667900-02
Chr04	irgsp1_rep	CDS	34093498	34093585	.	+	1	Parent=Os04t0667900-02
Chr04	irgsp1_rep	CDS	34093984	34094256	.	+	0	Parent=Os04t0667900-02
Chr04	irgsp1_rep	three_prime_UTR	34094257	34094484	.	+	.	Parent=Os04t0667900-02
Chr04	irgsp1_rep	mRNA	34095473	34096058	.	-	.	ID=Os04t0668000-01;Name=Os04t0668000-01;Locus_id=Os04g0668000;Note=Conserved hypothetical protein.;Transcript_evidence=AK062740 (DDBJ%2C Best hit);ORF_evidence=Q7XR77 (UniProt);NIAS_FLcDNA=001-106-F02;Expression=AK062740;TENOR=Os04t0668000-01;KEGG=Os04t0668000-01
Chr04	irgsp1_rep	CDS	34095738	34096058	.	-	0	Parent=Os04t0668000-01
Chr04	irgsp1_rep	three_prime_UTR	34095473	34095737	.	-	.	Parent=Os04t0668000-01
Chr04	irgsp1_rep	mRNA	34099320	34103201	.	-	.	ID=Os04t0668200-01;Name=Os04t0668200-01;Locus_id=Os04g0668200;Note=Hypothetical protein.;Transcript_evidence=AK288333 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090022L03;TENOR=Os04t0668200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34100420	34103201	.	-	.	Parent=Os04t0668200-01
Chr04	irgsp1_rep	CDS	34100123	34100419	.	-	0	Parent=Os04t0668200-01
Chr04	irgsp1_rep	three_prime_UTR	34099320	34100122	.	-	.	Parent=Os04t0668200-01
Chr04	irgsp1_rep	mRNA	34104471	34104969	.	-	.	ID=Os04t0668300-01;Name=Os04t0668300-01;Locus_id=Os04g0668300;Oryzabase Gene Symbol Synonym(s)=AGP%2C OsAGP;Oryzabase Gene Name Synonym(s)=Arabinogalactan protein;Note=Non-protein coding transcript.;Transcript_evidence=AK120932 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023036D13;Oryzabase=23018;TENOR=Os04t0668300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	exon	34104471	34104969	.	-	.	Parent=Os04t0668300-01
Chr04	irgsp1_rep	mRNA	34106650	34107001	.	+	.	ID=Os04t0668350-01;Name=Os04t0668350-01;Locus_id=Os04g0668350;Note=Non-protein coding transcript.;Transcript_evidence=AK071282 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023086N10;TENOR=Os04t0668350-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	exon	34106650	34107001	.	+	.	Parent=Os04t0668350-01
Chr04	irgsp1_rep	mRNA	34106658	34107161	.	-	.	ID=Os04t0668400-01;Name=Os04t0668400-01;Locus_id=Os04g0668400;Note=Non-protein coding transcript.;Transcript_evidence=AK107558 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-130-B06;TENOR=Os04t0668400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	exon	34106658	34107161	.	-	.	Parent=Os04t0668400-01
Chr04	irgsp1_rep	mRNA	34110319	34112130	.	+	.	ID=Os04t0668600-01;Name=Os04t0668600-01;Locus_id=Os04g0668600;Oryzabase Gene Symbol Synonym(s)=OsFbox237%2C Os_F0241;Oryzabase Gene Name Synonym(s)=F-box protein 237;Note=Kelch-type beta propeller domain containing protein.;Transcript_evidence=AK287832 (DDBJ%2C Best hit);ORF_evidence=B4FF73 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Galactose oxidase%2C beta-propeller (IPR015916),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J065187F20;Oryzabase=17023;TENOR=Os04t0668600-01;KEGG=Os04t0668600-01
Chr04	irgsp1_rep	five_prime_UTR	34110319	34110479	.	+	.	Parent=Os04t0668600-01
Chr04	irgsp1_rep	CDS	34110480	34111742	.	+	0	Parent=Os04t0668600-01
Chr04	irgsp1_rep	three_prime_UTR	34111743	34112130	.	+	.	Parent=Os04t0668600-01
Chr04	irgsp1_rep	mRNA	34114249	34116898	.	-	.	ID=Os04t0668700-01;Name=Os04t0668700-01;Locus_id=Os04g0668700;Note=Phosphatidylinositol 3- and 4-kinase%2C catalytic domain containing protein.;Transcript_evidence=AK065237 (DDBJ%2C Best hit);ORF_evidence=NP_001151804.1 (RefSeq);GO=Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Phosphatidylinositol 3-/4-kinase%2C catalytic (IPR000403);NIAS_FLcDNA=J013002I02;Expression=AK065237;TENOR=Os04t0668700-01;KEGG=Os04t0668700-01
Chr04	irgsp1_rep	five_prime_UTR	34116723	34116898	.	-	.	Parent=Os04t0668700-01
Chr04	irgsp1_rep	five_prime_UTR	34116417	34116536	.	-	.	Parent=Os04t0668700-01
Chr04	irgsp1_rep	CDS	34114599	34116416	.	-	0	Parent=Os04t0668700-01
Chr04	irgsp1_rep	three_prime_UTR	34114249	34114598	.	-	.	Parent=Os04t0668700-01
Chr04	irgsp1_rep	mRNA	34114346	34115605	.	-	.	ID=Os04t0668700-02;Name=Os04t0668700-02;Locus_id=Os04g0668700;Note=Similar to phosphatidylinositol 3- and 4-kinase family protein.;Transcript_evidence=AK062068 (DDBJ%2C Best hit);ORF_evidence=NP_001151804.1 (RefSeq);GO=Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Phosphatidylinositol 3-/4-kinase%2C catalytic (IPR000403);NIAS_FLcDNA=001-044-E01;Expression=AK062068;TENOR=Os04t0668700-02;KEGG=Os04t0668700-02
Chr04	irgsp1_rep	five_prime_UTR	34115604	34115605	.	-	.	Parent=Os04t0668700-02
Chr04	irgsp1_rep	CDS	34114599	34115603	.	-	0	Parent=Os04t0668700-02
Chr04	irgsp1_rep	three_prime_UTR	34114346	34114598	.	-	.	Parent=Os04t0668700-02
Chr04	irgsp1_rep	mRNA	34119501	34122972	.	+	.	ID=Os04t0668800-01;Name=Os04t0668800-01;Locus_id=Os04g0668800;Oryzabase Gene Name Synonym(s)=thiol-disulphide oxidoreductase DCC family protein;Note=Putative thiol-disulphide oxidoreductase DCC family protein.;Transcript_evidence=AK288046 (DDBJ%2C Best hit);ORF_evidence=Q8W437 (UniProt);InterPro=Putative thiol-disulphide oxidoreductase DCC (IPR007263);NIAS_FLcDNA=J075146C21;Oryzabase=21961;TENOR=Os04t0668800-01;KEGG=Os04t0668800-01
Chr04	irgsp1_rep	five_prime_UTR	34119501	34119533	.	+	.	Parent=Os04t0668800-01
Chr04	irgsp1_rep	CDS	34119534	34119660	.	+	0	Parent=Os04t0668800-01
Chr04	irgsp1_rep	CDS	34120043	34120173	.	+	2	Parent=Os04t0668800-01
Chr04	irgsp1_rep	CDS	34120837	34120944	.	+	0	Parent=Os04t0668800-01
Chr04	irgsp1_rep	CDS	34121326	34121382	.	+	0	Parent=Os04t0668800-01
Chr04	irgsp1_rep	CDS	34122138	34122203	.	+	0	Parent=Os04t0668800-01
Chr04	irgsp1_rep	CDS	34122391	34122451	.	+	0	Parent=Os04t0668800-01
Chr04	irgsp1_rep	CDS	34122609	34122652	.	+	2	Parent=Os04t0668800-01
Chr04	irgsp1_rep	CDS	34122735	34122770	.	+	0	Parent=Os04t0668800-01
Chr04	irgsp1_rep	three_prime_UTR	34122771	34122972	.	+	.	Parent=Os04t0668800-01
Chr04	irgsp1_rep	mRNA	34122909	34125915	.	-	.	ID=Os04t0668900-01;Name=Os04t0668900-01;Locus_id=Os04g0668900;RAP-DB Gene Symbol Synonym(s)=IM1%2C OsIM1%2C OsIM1a%2C OsIM2%2C OsIM%2C PTOX1;RAP-DB Gene Name Synonym(s)=OSIMASE%2C OsIMase%2C plastid terminal oxidase 1;CGSNL Gene Symbol=IM1;CGSNL Gene Name=OSIMASE;Oryzabase Gene Symbol Synonym(s)=OsIM1%2C OsIM1a%2C OsIM2%2C OsIM%2C PTOX1;Oryzabase Gene Name Synonym(s)=OsIMase%2C plastid terminal oxidase 1;Note=Protein similar to plastid terminal oxidase%2C Carotenoid and strigolactone synthesis;Transcript_evidence=AK067891;ORF_evidence=O82522;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: alternative oxidase activity (GO:0009916);InterPro=Alternative oxidase (IPR002680);NIAS_FLcDNA=J013124H21;Manual Curation=March 31%2C 2014;Literature_PMID=24350905;Oryzabase=2635;TENOR=Os04t0668900-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34125863	34125915	.	-	.	Parent=Os04t0668900-01
Chr04	irgsp1_rep	CDS	34125738	34125862	.	-	0	Parent=Os04t0668900-01
Chr04	irgsp1_rep	CDS	34125482	34125653	.	-	1	Parent=Os04t0668900-01
Chr04	irgsp1_rep	CDS	34125310	34125403	.	-	0	Parent=Os04t0668900-01
Chr04	irgsp1_rep	CDS	34125065	34125180	.	-	2	Parent=Os04t0668900-01
Chr04	irgsp1_rep	CDS	34124724	34124832	.	-	0	Parent=Os04t0668900-01
Chr04	irgsp1_rep	CDS	34124544	34124612	.	-	2	Parent=Os04t0668900-01
Chr04	irgsp1_rep	CDS	34124078	34124149	.	-	2	Parent=Os04t0668900-01
Chr04	irgsp1_rep	CDS	34123933	34123980	.	-	2	Parent=Os04t0668900-01
Chr04	irgsp1_rep	CDS	34123423	34123628	.	-	2	Parent=Os04t0668900-01
Chr04	irgsp1_rep	three_prime_UTR	34122909	34123422	.	-	.	Parent=Os04t0668900-01
Chr04	irgsp1_rep	mRNA	34128105	34131134	.	-	.	ID=Os04t0669100-01;Name=Os04t0669100-01;Locus_id=Os04g0669100;Note=Conserved hypothetical protein.;Transcript_evidence=AK103123 (DDBJ%2C Best hit),AK070188 (DDBJ%2C Best hit);ORF_evidence=B8AW17 (UniProt);NIAS_FLcDNA=J033119L03,J023045K17;TENOR=Os04t0669100-01
Chr04	irgsp1_rep	five_prime_UTR	34130915	34131134	.	-	.	Parent=Os04t0669100-01
Chr04	irgsp1_rep	CDS	34130786	34130914	.	-	0	Parent=Os04t0669100-01
Chr04	irgsp1_rep	CDS	34130637	34130709	.	-	0	Parent=Os04t0669100-01
Chr04	irgsp1_rep	CDS	34129944	34130008	.	-	2	Parent=Os04t0669100-01
Chr04	irgsp1_rep	CDS	34129372	34129481	.	-	0	Parent=Os04t0669100-01
Chr04	irgsp1_rep	CDS	34128474	34128675	.	-	1	Parent=Os04t0669100-01
Chr04	irgsp1_rep	three_prime_UTR	34128105	34128473	.	-	.	Parent=Os04t0669100-01
Chr04	irgsp1_rep	mRNA	34133718	34134538	.	-	.	ID=Os04t0669200-01;Name=Os04t0669200-01;Locus_id=Os04g0669200;CGSNL Gene Symbol=ERF76;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 76;Oryzabase Gene Symbol Synonym(s)=OsERF#076%2C OsERF076%2C OsERF76%2C AP2/EREBP#046%2C AP2/EREBP46%2C DLN126%2C OsDLN126;Oryzabase Gene Name Synonym(s)=ethylene response factor 76%2C APETALA2/ethylene-responsive element binding protein 46%2C DLN repressor 126%2C DLN motif protein 126;Note=Similar to Ethylene response factor 2 (Ethylene response factor 3).;Transcript_evidence=AK067373 (DDBJ%2C Best hit);ORF_evidence=NP_001148189.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J013106K03;Oryzabase=10585;Expression=AK067373;TENOR=Os04t0669200-01;KEGG=Os04t0669200-01
Chr04	irgsp1_rep	five_prime_UTR	34134439	34134538	.	-	.	Parent=Os04t0669200-01
Chr04	irgsp1_rep	CDS	34133866	34134438	.	-	0	Parent=Os04t0669200-01
Chr04	irgsp1_rep	three_prime_UTR	34133718	34133865	.	-	.	Parent=Os04t0669200-01
Chr04	irgsp1_rep	mRNA	34134968	34135729	.	+	.	ID=Os04t0669250-00;Name=Os04t0669250-00;Locus_id=Os04g0669250;Note=Non-protein coding transcript.;Transcript_evidence=CU406947 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os04t0669250-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	exon	34134968	34135729	.	+	.	Parent=Os04t0669250-00
Chr04	irgsp1_rep	mRNA	34138228	34142138	.	+	.	ID=Os04t0669300-01;Name=Os04t0669300-01;Locus_id=Os04g0669300;Note=EF hand domain containing protein.;Transcript_evidence=AK071148 (DDBJ%2C Best hit);ORF_evidence=NP_001030731.1 (RefSeq);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: GTP binding (GO:0005525);InterPro=EPS15 homology (EH) (IPR000261),Dynamin%2C GTPase domain (IPR001401),Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J023081M19;Expression=AK071148;TENOR=Os04t0669300-01;KEGG=Os04t0669300-01
Chr04	irgsp1_rep	five_prime_UTR	34138228	34138340	.	+	.	Parent=Os04t0669300-01
Chr04	irgsp1_rep	CDS	34138341	34138425	.	+	0	Parent=Os04t0669300-01
Chr04	irgsp1_rep	CDS	34138527	34138606	.	+	2	Parent=Os04t0669300-01
Chr04	irgsp1_rep	CDS	34138813	34138881	.	+	0	Parent=Os04t0669300-01
Chr04	irgsp1_rep	CDS	34138972	34139029	.	+	0	Parent=Os04t0669300-01
Chr04	irgsp1_rep	CDS	34139189	34139238	.	+	2	Parent=Os04t0669300-01
Chr04	irgsp1_rep	CDS	34139349	34139388	.	+	0	Parent=Os04t0669300-01
Chr04	irgsp1_rep	CDS	34139488	34139549	.	+	2	Parent=Os04t0669300-01
Chr04	irgsp1_rep	CDS	34139633	34139746	.	+	0	Parent=Os04t0669300-01
Chr04	irgsp1_rep	CDS	34140054	34140156	.	+	0	Parent=Os04t0669300-01
Chr04	irgsp1_rep	CDS	34140277	34140326	.	+	2	Parent=Os04t0669300-01
Chr04	irgsp1_rep	CDS	34140439	34140567	.	+	0	Parent=Os04t0669300-01
Chr04	irgsp1_rep	CDS	34140665	34140916	.	+	0	Parent=Os04t0669300-01
Chr04	irgsp1_rep	CDS	34141110	34141189	.	+	0	Parent=Os04t0669300-01
Chr04	irgsp1_rep	CDS	34141310	34141436	.	+	1	Parent=Os04t0669300-01
Chr04	irgsp1_rep	CDS	34141552	34141881	.	+	0	Parent=Os04t0669300-01
Chr04	irgsp1_rep	three_prime_UTR	34141882	34142138	.	+	.	Parent=Os04t0669300-01
Chr04	irgsp1_rep	mRNA	34138525	34141882	.	-	.	ID=Os04t0669375-00;Name=Os04t0669375-00;Locus_id=Os04g0669375;Note=Non-protein coding transcript.;Transcript_evidence=tplb0032i10 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os04t0669375-00
Chr04	irgsp1_rep	exon	34141558	34141882	.	-	.	Parent=Os04t0669375-00
Chr04	irgsp1_rep	exon	34141320	34141444	.	-	.	Parent=Os04t0669375-00
Chr04	irgsp1_rep	exon	34141103	34141201	.	-	.	Parent=Os04t0669375-00
Chr04	irgsp1_rep	exon	34140656	34140909	.	-	.	Parent=Os04t0669375-00
Chr04	irgsp1_rep	exon	34140446	34140559	.	-	.	Parent=Os04t0669375-00
Chr04	irgsp1_rep	exon	34140252	34140333	.	-	.	Parent=Os04t0669375-00
Chr04	irgsp1_rep	exon	34140056	34140137	.	-	.	Parent=Os04t0669375-00
Chr04	irgsp1_rep	exon	34139466	34139743	.	-	.	Parent=Os04t0669375-00
Chr04	irgsp1_rep	exon	34138948	34139016	.	-	.	Parent=Os04t0669375-00
Chr04	irgsp1_rep	exon	34138811	34138856	.	-	.	Parent=Os04t0669375-00
Chr04	irgsp1_rep	exon	34138525	34138604	.	-	.	Parent=Os04t0669375-00
Chr04	irgsp1_rep	mRNA	34142528	34143426	.	-	.	ID=Os04t0669450-00;Name=Os04t0669450-00;Locus_id=Os04g0669450;Note=Hypothetical gene.;Transcript_evidence=EU941171 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0669450-00;KEGG=Os04t0669450-00
Chr04	irgsp1_rep	five_prime_UTR	34143426	34143426	.	-	.	Parent=Os04t0669450-00
Chr04	irgsp1_rep	CDS	34142676	34143425	.	-	0	Parent=Os04t0669450-00
Chr04	irgsp1_rep	three_prime_UTR	34142528	34142675	.	-	.	Parent=Os04t0669450-00
Chr04	irgsp1_rep	mRNA	34142529	34143723	.	+	.	ID=Os04t0669475-00;Name=Os04t0669475-00;Locus_id=Os04g0669475;Note=Conserved hypothetical protein.;Transcript_evidence=FP101466 (DDBJ);ORF_evidence=Q7XR65 (UniProt);TENOR=Os04t0669475-00
Chr04	irgsp1_rep	five_prime_UTR	34142529	34142738	.	+	.	Parent=Os04t0669475-00
Chr04	irgsp1_rep	CDS	34142739	34143428	.	+	0	Parent=Os04t0669475-00
Chr04	irgsp1_rep	three_prime_UTR	34143429	34143723	.	+	.	Parent=Os04t0669475-00
Chr04	irgsp1_rep	mRNA	34148182	34150717	.	-	.	ID=Os04t0669500-01;Name=Os04t0669500-01;Locus_id=Os04g0669500;Note=Phospholipase/carboxylesterase domain containing protein.;Transcript_evidence=AK069249 (DDBJ%2C Best hit);ORF_evidence=Q259P2 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Phospholipase/carboxylesterase/thioesterase (IPR003140);NIAS_FLcDNA=J023019G02;Expression=AK069249;TENOR=Os04t0669500-01;KEGG=Os04t0669500-01 (EC:3.1.1.5)
Chr04	irgsp1_rep	five_prime_UTR	34150671	34150717	.	-	.	Parent=Os04t0669500-01
Chr04	irgsp1_rep	CDS	34150379	34150670	.	-	0	Parent=Os04t0669500-01
Chr04	irgsp1_rep	CDS	34150237	34150289	.	-	2	Parent=Os04t0669500-01
Chr04	irgsp1_rep	CDS	34150030	34150153	.	-	0	Parent=Os04t0669500-01
Chr04	irgsp1_rep	CDS	34149819	34149940	.	-	2	Parent=Os04t0669500-01
Chr04	irgsp1_rep	CDS	34148628	34148735	.	-	0	Parent=Os04t0669500-01
Chr04	irgsp1_rep	CDS	34148427	34148528	.	-	0	Parent=Os04t0669500-01
Chr04	irgsp1_rep	three_prime_UTR	34148182	34148426	.	-	.	Parent=Os04t0669500-01
Chr04	irgsp1_rep	mRNA	34150913	34152431	.	-	.	ID=Os04t0669600-01;Name=Os04t0669600-01;Locus_id=Os04g0669600;Note=Phospholipase/carboxylesterase domain containing protein.;Transcript_evidence=AK110767 (DDBJ%2C Best hit);ORF_evidence=Q259P1 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Phospholipase/carboxylesterase/thioesterase (IPR003140);NIAS_FLcDNA=002-171-A07;Expression=AK110767;TENOR=Os04t0669600-01;KEGG=Os04t0669600-01 (EC:3.1.1.5)
Chr04	irgsp1_rep	five_prime_UTR	34152345	34152431	.	-	.	Parent=Os04t0669600-01
Chr04	irgsp1_rep	CDS	34152176	34152344	.	-	0	Parent=Os04t0669600-01
Chr04	irgsp1_rep	CDS	34152007	34152059	.	-	2	Parent=Os04t0669600-01
Chr04	irgsp1_rep	CDS	34151733	34151856	.	-	0	Parent=Os04t0669600-01
Chr04	irgsp1_rep	CDS	34151536	34151657	.	-	2	Parent=Os04t0669600-01
Chr04	irgsp1_rep	CDS	34151325	34151432	.	-	0	Parent=Os04t0669600-01
Chr04	irgsp1_rep	CDS	34151091	34151222	.	-	0	Parent=Os04t0669600-01
Chr04	irgsp1_rep	three_prime_UTR	34150913	34151090	.	-	.	Parent=Os04t0669600-01
Chr04	irgsp1_rep	mRNA	34153140	34154923	.	-	.	ID=Os04t0669700-00;Name=Os04t0669700-00;Locus_id=Os04g0669700;Note=Similar to H0818H01.9 protein.;Transcript_evidence=CT835076 (DDBJ%2C Best hit);ORF_evidence=Q259P0 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Phospholipase/carboxylesterase/thioesterase (IPR003140);TENOR=Os04t0669700-00;KEGG=Os04t0669700-00
Chr04	irgsp1_rep	five_prime_UTR	34154911	34154923	.	-	.	Parent=Os04t0669700-00
Chr04	irgsp1_rep	CDS	34154736	34154910	.	-	0	Parent=Os04t0669700-00
Chr04	irgsp1_rep	CDS	34154390	34154529	.	-	2	Parent=Os04t0669700-00
Chr04	irgsp1_rep	three_prime_UTR	34154250	34154389	.	-	.	Parent=Os04t0669700-00
Chr04	irgsp1_rep	three_prime_UTR	34154048	34154169	.	-	.	Parent=Os04t0669700-00
Chr04	irgsp1_rep	three_prime_UTR	34153618	34153725	.	-	.	Parent=Os04t0669700-00
Chr04	irgsp1_rep	three_prime_UTR	34153140	34153500	.	-	.	Parent=Os04t0669700-00
Chr04	irgsp1_rep	mRNA	34155536	34158649	.	-	.	ID=Os04t0669800-01;Name=Os04t0669800-01;Locus_id=Os04g0669800;CGSNL Gene Symbol=MTK1;CGSNL Gene Name=METHYLTHIORIBOSE KINASE 1;Oryzabase Gene Symbol Synonym(s)=OsMTK%2C OsMTK1%2C MTK;Oryzabase Gene Name Synonym(s)=Methylthioribose Kinase 1%2C MTR kinase 1;Note=Methylthioribose kinase (EC 2.7.1.100).;Transcript_evidence=AK067649 (DDBJ%2C Best hit);ORF_evidence=Q7XR61 (UniProt);GO=Biological Process: methionine biosynthetic process (GO:0009086),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772),Molecular Function: S-methyl-5-thioribose kinase activity (GO:0046522);InterPro=Aminoglycoside phosphotransferase (IPR002575),Methylthioribose kinase (IPR009212),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J013114G08;Oryzabase=11130;Expression=AK067649;TENOR=Os04t0669800-01;KEGG=Os04t0669800-01 (EC:2.7.1.100)
Chr04	irgsp1_rep	five_prime_UTR	34158549	34158649	.	-	.	Parent=Os04t0669800-01
Chr04	irgsp1_rep	CDS	34158333	34158548	.	-	0	Parent=Os04t0669800-01
Chr04	irgsp1_rep	CDS	34157938	34158247	.	-	0	Parent=Os04t0669800-01
Chr04	irgsp1_rep	CDS	34157615	34157789	.	-	2	Parent=Os04t0669800-01
Chr04	irgsp1_rep	CDS	34157334	34157535	.	-	1	Parent=Os04t0669800-01
Chr04	irgsp1_rep	CDS	34156698	34156912	.	-	0	Parent=Os04t0669800-01
Chr04	irgsp1_rep	CDS	34155839	34156013	.	-	1	Parent=Os04t0669800-01
Chr04	irgsp1_rep	three_prime_UTR	34155536	34155838	.	-	.	Parent=Os04t0669800-01
Chr04	irgsp1_rep	mRNA	34161628	34164342	.	-	.	ID=Os04t0669900-00;Name=Os04t0669900-00;Locus_id=Os04g0669900;Oryzabase Gene Symbol Synonym(s)=OsMTK2;Oryzabase Gene Name Synonym(s)=Methylthioribose Kinase 2%2C MTR kinase 2;Note=Similar to H0818H01.11 protein.;Transcript_evidence=AY593959 (DDBJ%2C Secondary hit);ORF_evidence=Q259N8 (UniProt);GO=Biological Process: methionine biosynthetic process (GO:0009086),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772),Molecular Function: S-methyl-5-thioribose kinase activity (GO:0046522);InterPro=Aminoglycoside phosphotransferase (IPR002575),Methylthioribose kinase (IPR009212),Protein kinase-like domain (IPR011009);Oryzabase=14061;TENOR=Os04t0669900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34164341	34164342	.	-	.	Parent=Os04t0669900-00
Chr04	irgsp1_rep	CDS	34164155	34164340	.	-	0	Parent=Os04t0669900-00
Chr04	irgsp1_rep	CDS	34163748	34164060	.	-	0	Parent=Os04t0669900-00
Chr04	irgsp1_rep	CDS	34163475	34163649	.	-	2	Parent=Os04t0669900-00
Chr04	irgsp1_rep	CDS	34163196	34163397	.	-	1	Parent=Os04t0669900-00
Chr04	irgsp1_rep	CDS	34162342	34162556	.	-	0	Parent=Os04t0669900-00
Chr04	irgsp1_rep	CDS	34161729	34161903	.	-	1	Parent=Os04t0669900-00
Chr04	irgsp1_rep	three_prime_UTR	34161628	34161728	.	-	.	Parent=Os04t0669900-00
Chr04	irgsp1_rep	mRNA	34166490	34169404	.	+	.	ID=Os04t0670000-01;Name=Os04t0670000-01;Locus_id=Os04g0670000;Note=Reticulon family protein.;Transcript_evidence=AK071792 (DDBJ%2C Best hit);ORF_evidence=Q259P4 (UniProt);GO=Cellular Component: endoplasmic reticulum (GO:0005783);InterPro=Reticulon (IPR003388);NIAS_FLcDNA=J023112F10;Expression=AK071792;TENOR=Os04t0670000-01;KEGG=Os04t0670000-01
Chr04	irgsp1_rep	five_prime_UTR	34166490	34166729	.	+	.	Parent=Os04t0670000-01
Chr04	irgsp1_rep	CDS	34166730	34166781	.	+	0	Parent=Os04t0670000-01
Chr04	irgsp1_rep	CDS	34166869	34167049	.	+	2	Parent=Os04t0670000-01
Chr04	irgsp1_rep	CDS	34167893	34168034	.	+	1	Parent=Os04t0670000-01
Chr04	irgsp1_rep	CDS	34168155	34168224	.	+	0	Parent=Os04t0670000-01
Chr04	irgsp1_rep	CDS	34168340	34168494	.	+	2	Parent=Os04t0670000-01
Chr04	irgsp1_rep	three_prime_UTR	34168495	34168515	.	+	.	Parent=Os04t0670000-01
Chr04	irgsp1_rep	three_prime_UTR	34169113	34169404	.	+	.	Parent=Os04t0670000-01
Chr04	irgsp1_rep	mRNA	34171600	34173070	.	+	.	ID=Os04t0670100-00;Name=Os04t0670100-00;Locus_id=Os04g0670100;Note=Similar to H0818H01.13 protein.;Transcript_evidence=FP095236 (DDBJ);ORF_evidence=Q259P3 (UniProt);TENOR=Os04t0670100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34171600	34171617	.	+	.	Parent=Os04t0670100-00
Chr04	irgsp1_rep	CDS	34171618	34173027	.	+	0	Parent=Os04t0670100-00
Chr04	irgsp1_rep	three_prime_UTR	34173028	34173070	.	+	.	Parent=Os04t0670100-00
Chr04	irgsp1_rep	mRNA	34171761	34173033	.	-	.	ID=Os04t0670150-00;Name=Os04t0670150-00;Locus_id=Os04g0670150;Note=Hypothetical protein.;Transcript_evidence=BT068200 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0670150-00
Chr04	irgsp1_rep	five_prime_UTR	34172828	34173033	.	-	.	Parent=Os04t0670150-00
Chr04	irgsp1_rep	CDS	34172279	34172827	.	-	0	Parent=Os04t0670150-00
Chr04	irgsp1_rep	CDS	34171761	34172164	.	-	0	Parent=Os04t0670150-00
Chr04	irgsp1_rep	mRNA	34173356	34176732	.	-	.	ID=Os04t0670200-01;Name=Os04t0670200-01;Locus_id=Os04g0670200;CGSNL Gene Name=ORYZAIN BETA CHAIN;Oryzabase Gene Name Synonym(s)=oryzain beta;Note=Similar to Oryzain beta chain precursor (EC 3.4.22.-).;Transcript_evidence=AK109371 (DDBJ%2C Best hit),AK073373 (DDBJ%2C Best hit);ORF_evidence=Q0WXG7 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Granulin (IPR000118),Peptidase%2C cysteine peptidase active site (IPR000169),Peptidase C1A%2C papain C-terminal (IPR000668),Peptidase C1A%2C papain (IPR013128),Proteinase inhibitor I29%2C cathepsin propeptide (IPR013201);NIAS_FLcDNA=006-207-E09,J033027D09;Oryzabase=13726;TENOR=Os04t0670200-01
Chr04	irgsp1_rep	five_prime_UTR	34176629	34176732	.	-	.	Parent=Os04t0670200-01
Chr04	irgsp1_rep	CDS	34176142	34176628	.	-	0	Parent=Os04t0670200-01
Chr04	irgsp1_rep	CDS	34174774	34175012	.	-	2	Parent=Os04t0670200-01
Chr04	irgsp1_rep	CDS	34174537	34174677	.	-	0	Parent=Os04t0670200-01
Chr04	irgsp1_rep	CDS	34173993	34174460	.	-	0	Parent=Os04t0670200-01
Chr04	irgsp1_rep	CDS	34173617	34173682	.	-	0	Parent=Os04t0670200-01
Chr04	irgsp1_rep	three_prime_UTR	34173356	34173616	.	-	.	Parent=Os04t0670200-01
Chr04	irgsp1_rep	mRNA	34173356	34176706	.	-	.	ID=Os04t0670200-02;Name=Os04t0670200-02;Locus_id=Os04g0670200;CGSNL Gene Name=ORYZAIN BETA CHAIN;Oryzabase Gene Name Synonym(s)=oryzain beta;Note=Granulin domain containing protein.;Transcript_evidence=AK099358 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Granulin (IPR000118),Peptidase%2C cysteine peptidase active site (IPR000169),Peptidase C1A%2C papain C-terminal (IPR000668),Peptidase C1A%2C papain (IPR013128),Proteinase inhibitor I29%2C cathepsin propeptide (IPR013201);NIAS_FLcDNA=J033044I21;Oryzabase=13726;TENOR=Os04t0670200-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	34176142	34176706	.	-	0	Parent=Os04t0670200-02
Chr04	irgsp1_rep	CDS	34174774	34175012	.	-	2	Parent=Os04t0670200-02
Chr04	irgsp1_rep	CDS	34174537	34174677	.	-	0	Parent=Os04t0670200-02
Chr04	irgsp1_rep	CDS	34173993	34174460	.	-	0	Parent=Os04t0670200-02
Chr04	irgsp1_rep	CDS	34173617	34173682	.	-	0	Parent=Os04t0670200-02
Chr04	irgsp1_rep	three_prime_UTR	34173356	34173616	.	-	.	Parent=Os04t0670200-02
Chr04	irgsp1_rep	mRNA	34201163	34205682	.	-	.	ID=Os04t0670400-01;Name=Os04t0670400-01;Locus_id=Os04g0670400;Oryzabase Gene Name Synonym(s)=OTU domain-containing protein;Note=Similar to H0624F09.2 protein.;Transcript_evidence=AK103099 (DDBJ%2C Best hit);ORF_evidence=Q258Z6 (UniProt);NIAS_FLcDNA=J033118N06;Oryzabase=23090;TENOR=Os04t0670400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34205554	34205682	.	-	.	Parent=Os04t0670400-01
Chr04	irgsp1_rep	CDS	34205488	34205553	.	-	0	Parent=Os04t0670400-01
Chr04	irgsp1_rep	CDS	34205263	34205372	.	-	0	Parent=Os04t0670400-01
Chr04	irgsp1_rep	CDS	34205028	34205109	.	-	1	Parent=Os04t0670400-01
Chr04	irgsp1_rep	three_prime_UTR	34205027	34205027	.	-	.	Parent=Os04t0670400-01
Chr04	irgsp1_rep	three_prime_UTR	34204543	34204692	.	-	.	Parent=Os04t0670400-01
Chr04	irgsp1_rep	three_prime_UTR	34204232	34204296	.	-	.	Parent=Os04t0670400-01
Chr04	irgsp1_rep	three_prime_UTR	34204049	34204133	.	-	.	Parent=Os04t0670400-01
Chr04	irgsp1_rep	three_prime_UTR	34203777	34203926	.	-	.	Parent=Os04t0670400-01
Chr04	irgsp1_rep	three_prime_UTR	34203550	34203667	.	-	.	Parent=Os04t0670400-01
Chr04	irgsp1_rep	three_prime_UTR	34202536	34202672	.	-	.	Parent=Os04t0670400-01
Chr04	irgsp1_rep	three_prime_UTR	34201163	34202426	.	-	.	Parent=Os04t0670400-01
Chr04	irgsp1_rep	mRNA	34201068	34205659	.	-	.	ID=Os04t0670400-02;Name=Os04t0670400-02;Locus_id=Os04g0670400;Oryzabase Gene Name Synonym(s)=OTU domain-containing protein;Note=Similar to H0624F09.2 protein.;Transcript_evidence=AK064003 (DDBJ%2C Best hit);ORF_evidence=Q258Z6 (UniProt);InterPro=Ovarian tumour%2C otubain (IPR003323);NIAS_FLcDNA=001-124-G01;Oryzabase=23090;Expression=AK064003;TENOR=Os04t0670400-02;KEGG=Os04t0670400-02
Chr04	irgsp1_rep	five_prime_UTR	34205554	34205659	.	-	.	Parent=Os04t0670400-02
Chr04	irgsp1_rep	CDS	34205488	34205553	.	-	0	Parent=Os04t0670400-02
Chr04	irgsp1_rep	CDS	34205263	34205372	.	-	0	Parent=Os04t0670400-02
Chr04	irgsp1_rep	CDS	34205027	34205102	.	-	1	Parent=Os04t0670400-02
Chr04	irgsp1_rep	CDS	34204543	34204692	.	-	0	Parent=Os04t0670400-02
Chr04	irgsp1_rep	CDS	34204232	34204296	.	-	0	Parent=Os04t0670400-02
Chr04	irgsp1_rep	CDS	34204049	34204133	.	-	1	Parent=Os04t0670400-02
Chr04	irgsp1_rep	CDS	34203875	34203926	.	-	0	Parent=Os04t0670400-02
Chr04	irgsp1_rep	CDS	34202536	34202575	.	-	2	Parent=Os04t0670400-02
Chr04	irgsp1_rep	CDS	34202360	34202426	.	-	1	Parent=Os04t0670400-02
Chr04	irgsp1_rep	three_prime_UTR	34201068	34202359	.	-	.	Parent=Os04t0670400-02
Chr04	irgsp1_rep	mRNA	34205994	34207906	.	+	.	ID=Os04t0670500-01;Name=Os04t0670500-01;Locus_id=Os04g0670500;CGSNL Gene Symbol=CP1;CGSNL Gene Name=CYSTEINE PROTEASE 1;Oryzabase Gene Symbol Synonym(s)=OsCP1%2C Os CP1;Oryzabase Gene Name Synonym(s)=cysteine protease1%2C Cysteine protease 1%2C Cys protease 1;Note=Cysteine protease 1 precursor (EC 3.4.22.-) (OsCP1).;Transcript_evidence=AK107506 (DDBJ%2C Best hit);ORF_evidence=Q7XR52 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Granulin (IPR000118),Peptidase%2C cysteine peptidase active site (IPR000169),Peptidase C1A%2C papain C-terminal (IPR000668),Peptidase C1A%2C papain (IPR013128),Proteinase inhibitor I29%2C cathepsin propeptide (IPR013201);NIAS_FLcDNA=002-129-E06;Oryzabase=6117;Expression=AK107506;TENOR=Os04t0670500-01;KEGG=Os04t0670500-01
Chr04	irgsp1_rep	five_prime_UTR	34205994	34206104	.	+	.	Parent=Os04t0670500-01
Chr04	irgsp1_rep	CDS	34206105	34207466	.	+	0	Parent=Os04t0670500-01
Chr04	irgsp1_rep	CDS	34207660	34207770	.	+	0	Parent=Os04t0670500-01
Chr04	irgsp1_rep	three_prime_UTR	34207771	34207906	.	+	.	Parent=Os04t0670500-01
Chr04	irgsp1_rep	mRNA	34211238	34214800	.	-	.	ID=Os04t0670600-01;Name=Os04t0670600-01;Locus_id=Os04g0670600;Note=Similar to H0624F09.5 protein.;Transcript_evidence=AK064255 (DDBJ%2C Best hit);ORF_evidence=Q258Z3 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);NIAS_FLcDNA=002-105-C09;Expression=AK064255;TENOR=Os04t0670600-01;KEGG=Os04t0670600-01
Chr04	irgsp1_rep	five_prime_UTR	34214770	34214800	.	-	.	Parent=Os04t0670600-01
Chr04	irgsp1_rep	CDS	34214421	34214769	.	-	0	Parent=Os04t0670600-01
Chr04	irgsp1_rep	CDS	34214181	34214384	.	-	2	Parent=Os04t0670600-01
Chr04	irgsp1_rep	CDS	34213096	34213349	.	-	2	Parent=Os04t0670600-01
Chr04	irgsp1_rep	CDS	34211438	34211989	.	-	0	Parent=Os04t0670600-01
Chr04	irgsp1_rep	three_prime_UTR	34211238	34211437	.	-	.	Parent=Os04t0670600-01
Chr04	irgsp1_rep	mRNA	34209652	34214792	.	-	.	ID=Os04t0670600-02;Name=Os04t0670600-02;Locus_id=Os04g0670600;Note=Similar to H0624F09.5 protein.;Transcript_evidence=AK065924 (DDBJ%2C Best hit);ORF_evidence=Q258Z3 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);NIAS_FLcDNA=J013046L12;TENOR=Os04t0670600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34214770	34214792	.	-	.	Parent=Os04t0670600-02
Chr04	irgsp1_rep	CDS	34214181	34214769	.	-	0	Parent=Os04t0670600-02
Chr04	irgsp1_rep	CDS	34213365	34213381	.	-	2	Parent=Os04t0670600-02
Chr04	irgsp1_rep	three_prime_UTR	34213096	34213364	.	-	.	Parent=Os04t0670600-02
Chr04	irgsp1_rep	three_prime_UTR	34209923	34211989	.	-	.	Parent=Os04t0670600-02
Chr04	irgsp1_rep	three_prime_UTR	34209652	34209825	.	-	.	Parent=Os04t0670600-02
Chr04	irgsp1_rep	mRNA	34210591	34211092	.	+	.	ID=Os04t0670700-01;Name=Os04t0670700-01;Locus_id=Os04g0670700;Oryzabase Gene Symbol Synonym(s)=OsVTE5;Oryzabase Gene Name Synonym(s)=VITAMIN E DEFICIENT 5;Note=Similar to H0624F09.4 protein.;Transcript_evidence=AK063069 (DDBJ%2C Best hit);ORF_evidence=Q258Z4 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Phosphatidate cytidylyltransferase (IPR000374);NIAS_FLcDNA=001-110-G11;Oryzabase=18218;Expression=AK063069;TENOR=Os04t0670700-01;KEGG=Os04t0670700-01
Chr04	irgsp1_rep	CDS	34210591	34210706	.	+	0	Parent=Os04t0670700-01
Chr04	irgsp1_rep	CDS	34210793	34210991	.	+	1	Parent=Os04t0670700-01
Chr04	irgsp1_rep	three_prime_UTR	34210992	34211092	.	+	.	Parent=Os04t0670700-01
Chr04	irgsp1_rep	mRNA	34215822	34222368	.	+	.	ID=Os04t0670800-01;Name=Os04t0670800-01;Locus_id=Os04g0670800;Note=UBX domain containing protein.;Transcript_evidence=AK073170 (DDBJ%2C Best hit);ORF_evidence=Q258Z2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=UBX (IPR001012),Ubiquitin interacting motif (IPR003903),UAS (IPR006577),UBA-like (IPR009060),Thioredoxin-like fold (IPR012336),Uncharacterised conserved protein UCP037991%2C UAS/UBX (IPR017346);NIAS_FLcDNA=J033023O17;Expression=AK073170;TENOR=Os04t0670800-01;KEGG=Os04t0670800-01
Chr04	irgsp1_rep	five_prime_UTR	34215822	34215969	.	+	.	Parent=Os04t0670800-01
Chr04	irgsp1_rep	CDS	34215970	34216074	.	+	0	Parent=Os04t0670800-01
Chr04	irgsp1_rep	CDS	34216156	34216307	.	+	0	Parent=Os04t0670800-01
Chr04	irgsp1_rep	CDS	34216417	34216542	.	+	1	Parent=Os04t0670800-01
Chr04	irgsp1_rep	CDS	34218060	34218222	.	+	1	Parent=Os04t0670800-01
Chr04	irgsp1_rep	CDS	34218793	34218870	.	+	0	Parent=Os04t0670800-01
Chr04	irgsp1_rep	CDS	34218971	34219039	.	+	0	Parent=Os04t0670800-01
Chr04	irgsp1_rep	CDS	34219237	34219380	.	+	0	Parent=Os04t0670800-01
Chr04	irgsp1_rep	CDS	34219536	34219638	.	+	0	Parent=Os04t0670800-01
Chr04	irgsp1_rep	CDS	34221564	34221838	.	+	2	Parent=Os04t0670800-01
Chr04	irgsp1_rep	CDS	34221919	34222083	.	+	0	Parent=Os04t0670800-01
Chr04	irgsp1_rep	three_prime_UTR	34222084	34222368	.	+	.	Parent=Os04t0670800-01
Chr04	irgsp1_rep	mRNA	34218060	34222338	.	+	.	ID=Os04t0670800-02;Name=Os04t0670800-02;Locus_id=Os04g0670800;Note=UBX domain containing protein.;Transcript_evidence=AK072097 (DDBJ%2C Best hit);ORF_evidence=Q258Z2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=UBX (IPR001012),Ubiquitin interacting motif (IPR003903),UAS (IPR006577),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=J013116H05;Expression=AK072097;TENOR=Os04t0670800-02;KEGG=Os04t0670800-02
Chr04	irgsp1_rep	five_prime_UTR	34218060	34218060	.	+	.	Parent=Os04t0670800-02
Chr04	irgsp1_rep	CDS	34218061	34218222	.	+	0	Parent=Os04t0670800-02
Chr04	irgsp1_rep	CDS	34218793	34218870	.	+	0	Parent=Os04t0670800-02
Chr04	irgsp1_rep	CDS	34218971	34219039	.	+	0	Parent=Os04t0670800-02
Chr04	irgsp1_rep	CDS	34219237	34219380	.	+	0	Parent=Os04t0670800-02
Chr04	irgsp1_rep	CDS	34219536	34219638	.	+	0	Parent=Os04t0670800-02
Chr04	irgsp1_rep	CDS	34221564	34221838	.	+	2	Parent=Os04t0670800-02
Chr04	irgsp1_rep	CDS	34221919	34222083	.	+	0	Parent=Os04t0670800-02
Chr04	irgsp1_rep	three_prime_UTR	34222084	34222338	.	+	.	Parent=Os04t0670800-02
Chr04	irgsp1_rep	mRNA	34231186	34233221	.	-	.	ID=Os04t0670900-01;Name=Os04t0670900-01;Locus_id=Os04g0670900;RAP-DB Gene Symbol Synonym(s)=SH4%2C sh4%2C SH3%2C SH3/SH4;RAP-DB Gene Name Synonym(s)=SEED SHATTERING 4%2C SHATTERING 3;CGSNL Gene Symbol=SH4;CGSNL Gene Name=SHATTERING 4;Oryzabase Gene Symbol Synonym(s)=sh4%2C SH4%2C SHAT2%2C SHA1%2C qSH4%2C OsSh4%2C Sh4%2C Osh4%2C OsMSL23%2C MSL23;Oryzabase Gene Name Synonym(s)=grain shattering quantitative trait locus on Chromosome 4%2C SHATTERING ABORTION2%2C shattering abortion 2%2C shattering 4%2C Shattering1%2C Myb/SANT-LIKE 23;Note=Trihelix transcription factor%2C Control of the abscission layer formation%2C Seed shattering;Transcript_evidence=AB920921 (Taichung 65);ORF_evidence=Q7XR48;InterPro=Myb-like domain (IPR017877);Manual Curation=October 12%2C 2017;Literature_PMID=27861933,16527928;Oryzabase=8737;TENOR=Os04t0670900-00;KEGG=Os04t0670900-00;Subcellular location=nucleus (GO:0005634)
Chr04	irgsp1_rep	CDS	34232387	34233221	.	-	0	Parent=Os04t0670900-01
Chr04	irgsp1_rep	CDS	34231186	34231523	.	-	2	Parent=Os04t0670900-01
Chr04	irgsp1_rep	mRNA	34236448	34237973	.	-	.	ID=Os04t0671100-01;Name=Os04t0671100-01;Locus_id=Os04g0671100;Note=Similar to H0624F09.8 protein.;Transcript_evidence=AK241125 (DDBJ%2C Best hit);ORF_evidence=Q258Z0 (UniProt);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleobase-containing compound kinase activity (GO:0019205);InterPro=Adenylate kinase (IPR000850);NIAS_FLcDNA=J065095M17;TENOR=Os04t0671100-01;KEGG=Os04t0671100-01
Chr04	irgsp1_rep	five_prime_UTR	34237534	34237973	.	-	.	Parent=Os04t0671100-01
Chr04	irgsp1_rep	CDS	34237261	34237533	.	-	0	Parent=Os04t0671100-01
Chr04	irgsp1_rep	CDS	34236770	34236910	.	-	0	Parent=Os04t0671100-01
Chr04	irgsp1_rep	three_prime_UTR	34236448	34236769	.	-	.	Parent=Os04t0671100-01
Chr04	irgsp1_rep	mRNA	34239841	34243087	.	-	.	ID=Os04t0671200-01;Name=Os04t0671200-01;Locus_id=Os04g0671200;RAP-DB Gene Symbol Synonym(s)=PAO4%2C OsPAO4%2C OsAO1%2C AO1;RAP-DB Gene Name Synonym(s)=POLYAMINE OXIDASE 4%2C Polyamine oxidase 4%2C Amine oxidase 1;CGSNL Gene Symbol=PAO4;CGSNL Gene Name=POLYAMINE OXIDASE 4;Oryzabase Gene Symbol Synonym(s)=OsPAO4%2C OsAO1%2C AO1;Oryzabase Gene Name Synonym(s)=Polyamine oxidase 4%2C Amine oxidase 1;Note=Polyamine oxidase%2C Seed germination;Transcript_evidence=AK070003;ORF_evidence=Q7XR46;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Flavin amine oxidase (IPR001613),FAD/NAD(P)-binding domain (IPR023753),NAD(P)-binding domain (IPR016040),Amine oxidase (IPR002937);NIAS_FLcDNA=J023038N13;Manual Curation=September 21%2C 2016;Literature_PMID=21796433,27570530;Oryzabase=11405;Expression=AK070003;TENOR=Os04t0671200-01;KEGG=Os04t0671200-01
Chr04	irgsp1_rep	five_prime_UTR	34242750	34243087	.	-	.	Parent=Os04t0671200-01
Chr04	irgsp1_rep	CDS	34242722	34242749	.	-	0	Parent=Os04t0671200-01
Chr04	irgsp1_rep	CDS	34242167	34242371	.	-	2	Parent=Os04t0671200-01
Chr04	irgsp1_rep	CDS	34241965	34242078	.	-	1	Parent=Os04t0671200-01
Chr04	irgsp1_rep	CDS	34241782	34241869	.	-	1	Parent=Os04t0671200-01
Chr04	irgsp1_rep	CDS	34241578	34241663	.	-	0	Parent=Os04t0671200-01
Chr04	irgsp1_rep	CDS	34241370	34241472	.	-	1	Parent=Os04t0671200-01
Chr04	irgsp1_rep	CDS	34241125	34241222	.	-	0	Parent=Os04t0671200-01
Chr04	irgsp1_rep	CDS	34240532	34240961	.	-	1	Parent=Os04t0671200-01
Chr04	irgsp1_rep	CDS	34240101	34240412	.	-	0	Parent=Os04t0671200-01
Chr04	irgsp1_rep	three_prime_UTR	34239841	34240100	.	-	.	Parent=Os04t0671200-01
Chr04	irgsp1_rep	mRNA	34239804	34241659	.	-	.	ID=Os04t0671200-02;Name=Os04t0671200-02;Locus_id=Os04g0671200;CGSNL Gene Symbol=PAO4;CGSNL Gene Name=POLYAMINE OXIDASE 4;Oryzabase Gene Symbol Synonym(s)=OsPAO4%2C OsAO1%2C AO1;Oryzabase Gene Name Synonym(s)=Polyamine oxidase 4%2C Amine oxidase 1;Note=Similar to H0624F09.9 protein.;Transcript_evidence=AK106044 (DDBJ%2C Best hit);ORF_evidence=Q258Y9 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Amine oxidase (IPR002937);NIAS_FLcDNA=001-206-E04;Oryzabase=11405;Expression=AK106044;TENOR=Os04t0671200-02;KEGG=Os04t0671200-02 (EC:1.-.-.-)
Chr04	irgsp1_rep	five_prime_UTR	34241658	34241659	.	-	.	Parent=Os04t0671200-02
Chr04	irgsp1_rep	CDS	34241578	34241657	.	-	0	Parent=Os04t0671200-02
Chr04	irgsp1_rep	CDS	34241370	34241472	.	-	1	Parent=Os04t0671200-02
Chr04	irgsp1_rep	CDS	34241125	34241222	.	-	0	Parent=Os04t0671200-02
Chr04	irgsp1_rep	CDS	34240532	34240961	.	-	1	Parent=Os04t0671200-02
Chr04	irgsp1_rep	CDS	34240101	34240412	.	-	0	Parent=Os04t0671200-02
Chr04	irgsp1_rep	three_prime_UTR	34239804	34240100	.	-	.	Parent=Os04t0671200-02
Chr04	irgsp1_rep	mRNA	34240099	34242373	.	+	.	ID=Os04t0671250-00;Name=Os04t0671250-00;Locus_id=Os04g0671250;Note=Hypothetical protein.;Transcript_evidence=tplb0048c15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0671250-00
Chr04	irgsp1_rep	five_prime_UTR	34240099	34240100	.	+	.	Parent=Os04t0671250-00
Chr04	irgsp1_rep	CDS	34240101	34240397	.	+	0	Parent=Os04t0671250-00
Chr04	irgsp1_rep	three_prime_UTR	34240398	34240410	.	+	.	Parent=Os04t0671250-00
Chr04	irgsp1_rep	three_prime_UTR	34240534	34240955	.	+	.	Parent=Os04t0671250-00
Chr04	irgsp1_rep	three_prime_UTR	34241118	34241229	.	+	.	Parent=Os04t0671250-00
Chr04	irgsp1_rep	three_prime_UTR	34241380	34241467	.	+	.	Parent=Os04t0671250-00
Chr04	irgsp1_rep	three_prime_UTR	34241567	34241661	.	+	.	Parent=Os04t0671250-00
Chr04	irgsp1_rep	three_prime_UTR	34241770	34241861	.	+	.	Parent=Os04t0671250-00
Chr04	irgsp1_rep	three_prime_UTR	34241960	34242071	.	+	.	Parent=Os04t0671250-00
Chr04	irgsp1_rep	three_prime_UTR	34242161	34242373	.	+	.	Parent=Os04t0671250-00
Chr04	irgsp1_rep	mRNA	34244273	34248323	.	-	.	ID=Os04t0671300-01;Name=Os04t0671300-01;Locus_id=Os04g0671300;RAP-DB Gene Symbol Synonym(s)=PAO5%2C OsPAO5%2C OsAO2%2C AO2;RAP-DB Gene Name Synonym(s)=POLYAMINE OXIDASE 5%2C Polyamine oxidase 5%2C Amine oxidase 2;CGSNL Gene Symbol=PAO5;CGSNL Gene Name=POLYAMINE OXIDASE 5;Oryzabase Gene Symbol Synonym(s)=OsPAO5%2C OsAO2%2C AO2;Oryzabase Gene Name Synonym(s)=Polyamine oxidase 5%2C Amine oxidase 2;Note=Polyamine oxidase%2C Seed germination;Transcript_evidence=AK072414;ORF_evidence=Q0J954;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Flavin amine oxidase (IPR001613),NAD(P)-binding domain (IPR016040),FAD/NAD(P)-binding domain (IPR023753),Amine oxidase (IPR002937);NIAS_FLcDNA=J023083K01;Manual Curation=September 21%2C 2016;Literature_PMID=21796433,27570530;Oryzabase=11406;Expression=AK072414;TENOR=Os04t0671300-01;KEGG=Os04t0671300-01
Chr04	irgsp1_rep	five_prime_UTR	34247876	34248323	.	-	.	Parent=Os04t0671300-01
Chr04	irgsp1_rep	CDS	34247842	34247875	.	-	0	Parent=Os04t0671300-01
Chr04	irgsp1_rep	CDS	34246561	34246676	.	-	2	Parent=Os04t0671300-01
Chr04	irgsp1_rep	CDS	34246339	34246427	.	-	0	Parent=Os04t0671300-01
Chr04	irgsp1_rep	CDS	34246142	34246255	.	-	1	Parent=Os04t0671300-01
Chr04	irgsp1_rep	CDS	34245970	34246057	.	-	1	Parent=Os04t0671300-01
Chr04	irgsp1_rep	CDS	34245801	34245886	.	-	0	Parent=Os04t0671300-01
Chr04	irgsp1_rep	CDS	34245607	34245709	.	-	1	Parent=Os04t0671300-01
Chr04	irgsp1_rep	CDS	34245417	34245514	.	-	0	Parent=Os04t0671300-01
Chr04	irgsp1_rep	CDS	34244877	34245306	.	-	1	Parent=Os04t0671300-01
Chr04	irgsp1_rep	CDS	34244458	34244778	.	-	0	Parent=Os04t0671300-01
Chr04	irgsp1_rep	three_prime_UTR	34244273	34244457	.	-	.	Parent=Os04t0671300-01
Chr04	irgsp1_rep	mRNA	34244389	34248349	.	+	.	ID=Os04t0671500-00;Name=Os04t0671500-00;Locus_id=Os04g0671500;Note=Hypothetical protein.;Transcript_evidence=tplb0048c15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0671500-00
Chr04	irgsp1_rep	five_prime_UTR	34244389	34244788	.	+	.	Parent=Os04t0671500-00
Chr04	irgsp1_rep	five_prime_UTR	34244888	34245316	.	+	.	Parent=Os04t0671500-00
Chr04	irgsp1_rep	five_prime_UTR	34245428	34245529	.	+	.	Parent=Os04t0671500-00
Chr04	irgsp1_rep	five_prime_UTR	34245627	34245717	.	+	.	Parent=Os04t0671500-00
Chr04	irgsp1_rep	five_prime_UTR	34245806	34245886	.	+	.	Parent=Os04t0671500-00
Chr04	irgsp1_rep	five_prime_UTR	34245970	34246057	.	+	.	Parent=Os04t0671500-00
Chr04	irgsp1_rep	five_prime_UTR	34246142	34246252	.	+	.	Parent=Os04t0671500-00
Chr04	irgsp1_rep	five_prime_UTR	34246336	34246420	.	+	.	Parent=Os04t0671500-00
Chr04	irgsp1_rep	five_prime_UTR	34246554	34246597	.	+	.	Parent=Os04t0671500-00
Chr04	irgsp1_rep	CDS	34246598	34246659	.	+	0	Parent=Os04t0671500-00
Chr04	irgsp1_rep	CDS	34247822	34248002	.	+	1	Parent=Os04t0671500-00
Chr04	irgsp1_rep	three_prime_UTR	34248003	34248349	.	+	.	Parent=Os04t0671500-00
Chr04	irgsp1_rep	mRNA	34267955	34270846	.	-	.	ID=Os04t0671700-01;Name=Os04t0671700-01;Locus_id=Os04g0671700;Oryzabase Gene Symbol Synonym(s)=OsDJ-1C%2C DJ-1C%2C OsDJ-1C.1%2C OsDJ-1C.2%2C OsDJ-1C.3;Oryzabase Gene Name Synonym(s)=DJ-1/PfpI domain containing protein C%2C DJ-1 protein C;Note=ThiJ/PfpI domain containing protein.;Transcript_evidence=AK100753 (DDBJ%2C Best hit);ORF_evidence=NP_001146927.1 (RefSeq);GO=Molecular Function: hydrolase activity%2C acting on glycosyl bonds (GO:0016798);InterPro=ThiJ/PfpI (IPR002818),Peptidase C56%2C PfpI (IPR006286);NIAS_FLcDNA=J023118M23;Oryzabase=20914;Expression=AK100753;TENOR=Os04t0671700-01;KEGG=Os04t0671700-01
Chr04	irgsp1_rep	five_prime_UTR	34270788	34270846	.	-	.	Parent=Os04t0671700-01
Chr04	irgsp1_rep	CDS	34270734	34270787	.	-	0	Parent=Os04t0671700-01
Chr04	irgsp1_rep	CDS	34270525	34270641	.	-	0	Parent=Os04t0671700-01
Chr04	irgsp1_rep	CDS	34269225	34269665	.	-	0	Parent=Os04t0671700-01
Chr04	irgsp1_rep	CDS	34268743	34269105	.	-	0	Parent=Os04t0671700-01
Chr04	irgsp1_rep	CDS	34268099	34268287	.	-	0	Parent=Os04t0671700-01
Chr04	irgsp1_rep	three_prime_UTR	34267955	34268098	.	-	.	Parent=Os04t0671700-01
Chr04	irgsp1_rep	mRNA	34272659	34276664	.	-	.	ID=Os04t0671800-01;Name=Os04t0671800-01;Locus_id=Os04g0671800;CGSNL Gene Symbol=C3H32;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32;Oryzabase Gene Symbol Synonym(s)=OsC3H32;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 32;Note=Zinc finger%2C CCCH-type domain containing protein.;Transcript_evidence=AK070857 (DDBJ%2C Best hit);ORF_evidence=F1DK83 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=J023066C11;Oryzabase=8597;Expression=AK070857;TENOR=Os04t0671800-01;KEGG=Os04t0671800-01
Chr04	irgsp1_rep	five_prime_UTR	34276397	34276664	.	-	.	Parent=Os04t0671800-01
Chr04	irgsp1_rep	CDS	34276250	34276396	.	-	0	Parent=Os04t0671800-01
Chr04	irgsp1_rep	CDS	34275132	34275242	.	-	0	Parent=Os04t0671800-01
Chr04	irgsp1_rep	CDS	34273030	34274907	.	-	0	Parent=Os04t0671800-01
Chr04	irgsp1_rep	three_prime_UTR	34272659	34273029	.	-	.	Parent=Os04t0671800-01
Chr04	irgsp1_rep	mRNA	34272660	34274202	.	-	.	ID=Os04t0671800-02;Name=Os04t0671800-02;Locus_id=Os04g0671800;CGSNL Gene Symbol=C3H32;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32;Oryzabase Gene Symbol Synonym(s)=OsC3H32;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 32;Note=Similar to H0624F09.12 protein.;Transcript_evidence=AK059421 (DDBJ%2C Best hit);ORF_evidence=F1DK83 (UniProt);NIAS_FLcDNA=001-027-D12;Oryzabase=8597;Expression=AK059421;TENOR=Os04t0671800-02;KEGG=Os04t0671800-02
Chr04	irgsp1_rep	CDS	34273030	34274202	.	-	0	Parent=Os04t0671800-02
Chr04	irgsp1_rep	three_prime_UTR	34272660	34273029	.	-	.	Parent=Os04t0671800-02
Chr04	irgsp1_rep	mRNA	34278477	34285845	.	-	.	ID=Os04t0671900-01;Name=Os04t0671900-01;Locus_id=Os04g0671900;RAP-DB Gene Symbol Synonym(s)=ARF8%2C OsARF8%2C OsARF12%2C ARF12;RAP-DB Gene Name Synonym(s)=AUXIN RESPONSE FACTOR 8%2C auxin response factor-8%2C auxin response factor 8%2C auxin responsive factor 8%2C auxin response factor-12%2C auxin response factor 12;CGSNL Gene Symbol=ARF8;CGSNL Gene Name=AUXIN RESPONSE FACTOR 8;Oryzabase Gene Symbol Synonym(s)=OsARF8%2C OsARF12%2C ARF12;Oryzabase Gene Name Synonym(s)=auxin response factor-8%2C auxin response factor 8%2C auxin responsive factor 8%2C auxin response factor-12%2C auxin response factor 12;Note=Transcription factor%2C Regulator for phosphate homeostasis;Transcript_evidence=AK071455;ORF_evidence=Q0J951;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Biological Process: response to hormone (GO:0009725),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983),Cellular Component: nucleus (GO:0005634);InterPro=AUX/IAA protein (IPR003311),DNA-binding pseudobarrel domain (IPR015300),B3 DNA binding domain (IPR003340),Auxin response factor (IPR010525),Aux/IAA-ARF-dimerisation (IPR011525);NIAS_FLcDNA=J023093B04;Manual Curation=January 9%2C 2014;Literature_PMID=24111723;Oryzabase=9992;TENOR=Os04t0671900-01;KEGG=Os04t0671900-01
Chr04	irgsp1_rep	five_prime_UTR	34285613	34285845	.	-	.	Parent=Os04t0671900-01
Chr04	irgsp1_rep	five_prime_UTR	34285403	34285502	.	-	.	Parent=Os04t0671900-01
Chr04	irgsp1_rep	CDS	34285333	34285402	.	-	0	Parent=Os04t0671900-01
Chr04	irgsp1_rep	CDS	34285121	34285230	.	-	2	Parent=Os04t0671900-01
Chr04	irgsp1_rep	CDS	34284907	34285005	.	-	0	Parent=Os04t0671900-01
Chr04	irgsp1_rep	CDS	34284724	34284780	.	-	0	Parent=Os04t0671900-01
Chr04	irgsp1_rep	CDS	34284450	34284605	.	-	0	Parent=Os04t0671900-01
Chr04	irgsp1_rep	CDS	34284263	34284347	.	-	0	Parent=Os04t0671900-01
Chr04	irgsp1_rep	CDS	34283390	34283480	.	-	2	Parent=Os04t0671900-01
Chr04	irgsp1_rep	CDS	34283140	34283304	.	-	1	Parent=Os04t0671900-01
Chr04	irgsp1_rep	CDS	34282935	34283057	.	-	1	Parent=Os04t0671900-01
Chr04	irgsp1_rep	CDS	34282543	34282618	.	-	1	Parent=Os04t0671900-01
Chr04	irgsp1_rep	CDS	34282183	34282330	.	-	0	Parent=Os04t0671900-01
Chr04	irgsp1_rep	CDS	34280585	34281573	.	-	2	Parent=Os04t0671900-01
Chr04	irgsp1_rep	CDS	34280291	34280481	.	-	0	Parent=Os04t0671900-01
Chr04	irgsp1_rep	CDS	34279274	34279370	.	-	1	Parent=Os04t0671900-01
Chr04	irgsp1_rep	three_prime_UTR	34279248	34279273	.	-	.	Parent=Os04t0671900-01
Chr04	irgsp1_rep	three_prime_UTR	34278477	34278920	.	-	.	Parent=Os04t0671900-01
Chr04	irgsp1_rep	mRNA	34278563	34282330	.	-	.	ID=Os04t0671900-02;Name=Os04t0671900-02;Locus_id=Os04g0671900;CGSNL Gene Symbol=ARF8;CGSNL Gene Name=AUXIN RESPONSE FACTOR 8;Oryzabase Gene Symbol Synonym(s)=OsARF8%2C OsARF12%2C ARF12;Oryzabase Gene Name Synonym(s)=auxin response factor-8%2C auxin response factor 8%2C auxin responsive factor 8%2C auxin response factor-12%2C auxin response factor 12;Note=Similar to Auxin response factor 12.;Transcript_evidence=AK067150 (DDBJ%2C Best hit);ORF_evidence=Q0J951 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Aux/IAA-ARF-dimerisation (IPR011525);NIAS_FLcDNA=J013096O18;Oryzabase=9992;TENOR=Os04t0671900-02;KEGG=Os04t0671900-02
Chr04	irgsp1_rep	CDS	34282183	34282330	.	-	0	Parent=Os04t0671900-02
Chr04	irgsp1_rep	CDS	34280585	34281573	.	-	2	Parent=Os04t0671900-02
Chr04	irgsp1_rep	CDS	34280291	34280481	.	-	0	Parent=Os04t0671900-02
Chr04	irgsp1_rep	CDS	34279274	34279370	.	-	1	Parent=Os04t0671900-02
Chr04	irgsp1_rep	three_prime_UTR	34279248	34279273	.	-	.	Parent=Os04t0671900-02
Chr04	irgsp1_rep	three_prime_UTR	34278563	34278920	.	-	.	Parent=Os04t0671900-02
Chr04	irgsp1_rep	mRNA	34278549	34281440	.	-	.	ID=Os04t0671900-03;Name=Os04t0671900-03;Locus_id=Os04g0671900;CGSNL Gene Symbol=ARF8;CGSNL Gene Name=AUXIN RESPONSE FACTOR 8;Oryzabase Gene Symbol Synonym(s)=OsARF8%2C OsARF12%2C ARF12;Oryzabase Gene Name Synonym(s)=auxin response factor-8%2C auxin response factor 8%2C auxin responsive factor 8%2C auxin response factor-12%2C auxin response factor 12;Note=Similar to Auxin response factor 12.;Transcript_evidence=AK104920 (DDBJ%2C Best hit);ORF_evidence=Q0J951 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Aux/IAA-ARF-dimerisation (IPR011525);NIAS_FLcDNA=001-047-G04;Oryzabase=9992;TENOR=Os04t0671900-03;KEGG=Os04t0671900-03
Chr04	irgsp1_rep	five_prime_UTR	34281440	34281440	.	-	.	Parent=Os04t0671900-03
Chr04	irgsp1_rep	CDS	34280585	34281439	.	-	0	Parent=Os04t0671900-03
Chr04	irgsp1_rep	CDS	34280291	34280481	.	-	0	Parent=Os04t0671900-03
Chr04	irgsp1_rep	CDS	34279274	34279370	.	-	1	Parent=Os04t0671900-03
Chr04	irgsp1_rep	three_prime_UTR	34279248	34279273	.	-	.	Parent=Os04t0671900-03
Chr04	irgsp1_rep	three_prime_UTR	34278549	34278920	.	-	.	Parent=Os04t0671900-03
Chr04	irgsp1_rep	mRNA	34298799	34302564	.	-	.	ID=Os04t0672100-01;Name=Os04t0672100-01;Locus_id=Os04g0672100;RAP-DB Gene Symbol Synonym(s)=OsPSKR2;RAP-DB Gene Name Synonym(s)=phytosulfokine receptor 2;CGSNL Gene Symbol=PSKR2;CGSNL Gene Name=PHYTOSULFOKINE RECEPTOR 2;Oryzabase Gene Symbol Synonym(s)=OsPSKR2;Oryzabase Gene Name Synonym(s)=phytosulfokine receptor 2;Note=Phytosulfokine (PSK) receptor;Transcript_evidence=AK121689;ORF_evidence=Q7XPI1;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=Leucine-rich repeat domain superfamily (IPR032675),Protein kinase-like domain superfamily (IPR011009),Leucine-rich repeat-containing N-terminal%2C plant-type (IPR013210),Protein kinase domain (IPR000719),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat (IPR001611),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J033071C20;Manual Curation=February 19%2C 2020;Literature_PMID=31388828;Oryzabase=23467;Expression=AK121689;TENOR=Os04t0672100-01;KEGG=Os04t0672100-01 (EC:2.7.1.37)
Chr04	irgsp1_rep	five_prime_UTR	34302181	34302564	.	-	.	Parent=Os04t0672100-01
Chr04	irgsp1_rep	CDS	34299142	34302180	.	-	0	Parent=Os04t0672100-01
Chr04	irgsp1_rep	three_prime_UTR	34298799	34299141	.	-	.	Parent=Os04t0672100-01
Chr04	irgsp1_rep	mRNA	34314400	34320079	.	-	.	ID=Os04t0672200-01;Name=Os04t0672200-01;Locus_id=Os04g0672200;Note=Poly(ADP-ribose) polymerase%2C catalytic region domain containing protein.;Transcript_evidence=AK099725 (DDBJ%2C Best hit);ORF_evidence=Q258Z8 (UniProt);GO=Molecular Function: NAD+ ADP-ribosyltransferase activity (GO:0003950);InterPro=Poly(ADP-ribose) polymerase%2C catalytic domain (IPR012317),RST domain of plant C-terminal (IPR022003);NIAS_FLcDNA=J013089B18;Expression=AK099725;TENOR=Os04t0672200-01;KEGG=Os04t0672200-01
Chr04	irgsp1_rep	five_prime_UTR	34319810	34320079	.	-	.	Parent=Os04t0672200-01
Chr04	irgsp1_rep	five_prime_UTR	34318887	34318901	.	-	.	Parent=Os04t0672200-01
Chr04	irgsp1_rep	CDS	34317937	34318886	.	-	0	Parent=Os04t0672200-01
Chr04	irgsp1_rep	CDS	34317614	34317855	.	-	1	Parent=Os04t0672200-01
Chr04	irgsp1_rep	CDS	34317447	34317526	.	-	2	Parent=Os04t0672200-01
Chr04	irgsp1_rep	CDS	34317130	34317258	.	-	0	Parent=Os04t0672200-01
Chr04	irgsp1_rep	CDS	34316931	34317026	.	-	0	Parent=Os04t0672200-01
Chr04	irgsp1_rep	CDS	34315185	34316382	.	-	0	Parent=Os04t0672200-01
Chr04	irgsp1_rep	CDS	34314913	34315090	.	-	2	Parent=Os04t0672200-01
Chr04	irgsp1_rep	CDS	34314794	34314800	.	-	1	Parent=Os04t0672200-01
Chr04	irgsp1_rep	three_prime_UTR	34314400	34314793	.	-	.	Parent=Os04t0672200-01
Chr04	irgsp1_rep	mRNA	34321350	34324747	.	-	.	ID=Os04t0672300-01;Name=Os04t0672300-01;Locus_id=Os04g0672300;Note=Similar to H0322F07.3 protein.;Transcript_evidence=AK101246 (DDBJ%2C Best hit);ORF_evidence=Q259A6 (UniProt);NIAS_FLcDNA=J033032C09;Expression=AK101246;TENOR=Os04t0672300-01;KEGG=Os04t0672300-01
Chr04	irgsp1_rep	five_prime_UTR	34324682	34324747	.	-	.	Parent=Os04t0672300-01
Chr04	irgsp1_rep	five_prime_UTR	34324329	34324428	.	-	.	Parent=Os04t0672300-01
Chr04	irgsp1_rep	five_prime_UTR	34323296	34323301	.	-	.	Parent=Os04t0672300-01
Chr04	irgsp1_rep	CDS	34323200	34323295	.	-	0	Parent=Os04t0672300-01
Chr04	irgsp1_rep	CDS	34323023	34323116	.	-	0	Parent=Os04t0672300-01
Chr04	irgsp1_rep	CDS	34322293	34322476	.	-	2	Parent=Os04t0672300-01
Chr04	irgsp1_rep	CDS	34321738	34321807	.	-	1	Parent=Os04t0672300-01
Chr04	irgsp1_rep	three_prime_UTR	34321350	34321737	.	-	.	Parent=Os04t0672300-01
Chr04	irgsp1_rep	mRNA	34329739	34332205	.	-	.	ID=Os04t0672600-01;Name=Os04t0672600-01;Locus_id=Os04g0672600;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=AK070283 (DDBJ%2C Best hit);ORF_evidence=Q258Z9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J023048N04;Expression=AK070283;TENOR=Os04t0672600-01;KEGG=Os04t0672600-01
Chr04	irgsp1_rep	five_prime_UTR	34332205	34332205	.	-	.	Parent=Os04t0672600-01
Chr04	irgsp1_rep	CDS	34330042	34332204	.	-	0	Parent=Os04t0672600-01
Chr04	irgsp1_rep	three_prime_UTR	34329739	34330041	.	-	.	Parent=Os04t0672600-01
Chr04	irgsp1_rep	mRNA	34333498	34336668	.	-	.	ID=Os04t0672700-01;Name=Os04t0672700-01;Locus_id=Os04g0672700;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK100434 (DDBJ%2C Best hit),AK102863 (DDBJ%2C Best hit);ORF_evidence=Q259A5 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J023088J01,J033111K13;Expression=AK100434;TENOR=Os04t0672700-01;KEGG=Os04t0672700-01
Chr04	irgsp1_rep	five_prime_UTR	34336646	34336668	.	-	.	Parent=Os04t0672700-01
Chr04	irgsp1_rep	CDS	34334486	34336645	.	-	0	Parent=Os04t0672700-01
Chr04	irgsp1_rep	three_prime_UTR	34333498	34334485	.	-	.	Parent=Os04t0672700-01
Chr04	irgsp1_rep	mRNA	34338474	34341851	.	+	.	ID=Os04t0672800-01;Name=Os04t0672800-01;Locus_id=Os04g0672800;Note=Similar to H0322F07.5 protein.;Transcript_evidence=AK068413 (DDBJ%2C Best hit);ORF_evidence=Q259A4 (UniProt);NIAS_FLcDNA=J013151L20;Expression=AK068413;TENOR=Os04t0672800-01;KEGG=Os04t0672800-01
Chr04	irgsp1_rep	five_prime_UTR	34338474	34338673	.	+	.	Parent=Os04t0672800-01
Chr04	irgsp1_rep	CDS	34338674	34338781	.	+	0	Parent=Os04t0672800-01
Chr04	irgsp1_rep	CDS	34338886	34339065	.	+	0	Parent=Os04t0672800-01
Chr04	irgsp1_rep	CDS	34339179	34339226	.	+	0	Parent=Os04t0672800-01
Chr04	irgsp1_rep	CDS	34340255	34340311	.	+	0	Parent=Os04t0672800-01
Chr04	irgsp1_rep	CDS	34340400	34340501	.	+	0	Parent=Os04t0672800-01
Chr04	irgsp1_rep	CDS	34340628	34340693	.	+	0	Parent=Os04t0672800-01
Chr04	irgsp1_rep	CDS	34341167	34341268	.	+	0	Parent=Os04t0672800-01
Chr04	irgsp1_rep	CDS	34341363	34341461	.	+	0	Parent=Os04t0672800-01
Chr04	irgsp1_rep	three_prime_UTR	34341462	34341851	.	+	.	Parent=Os04t0672800-01
Chr04	irgsp1_rep	mRNA	34342607	34345299	.	+	.	ID=Os04t0672900-01;Name=Os04t0672900-01;Locus_id=Os04g0672900;Note=Similar to H0322F07.6 protein.;Transcript_evidence=AK065014 (DDBJ%2C Best hit);ORF_evidence=Q259A3 (UniProt);InterPro=Domain of unknown function DUF2296 (IPR019273);NIAS_FLcDNA=J013001F07;Expression=AK065014;TENOR=Os04t0672900-01;KEGG=Os04t0672900-01
Chr04	irgsp1_rep	five_prime_UTR	34342607	34342805	.	+	.	Parent=Os04t0672900-01
Chr04	irgsp1_rep	CDS	34342806	34343081	.	+	0	Parent=Os04t0672900-01
Chr04	irgsp1_rep	CDS	34343500	34343644	.	+	0	Parent=Os04t0672900-01
Chr04	irgsp1_rep	CDS	34344085	34344194	.	+	2	Parent=Os04t0672900-01
Chr04	irgsp1_rep	CDS	34344315	34344714	.	+	0	Parent=Os04t0672900-01
Chr04	irgsp1_rep	CDS	34344785	34345200	.	+	2	Parent=Os04t0672900-01
Chr04	irgsp1_rep	three_prime_UTR	34345201	34345299	.	+	.	Parent=Os04t0672900-01
Chr04	irgsp1_rep	mRNA	34342695	34345315	.	+	.	ID=Os04t0672900-02;Name=Os04t0672900-02;Locus_id=Os04g0672900;Note=Similar to H0322F07.6 protein.;Transcript_evidence=AK062248 (DDBJ%2C Best hit);ORF_evidence=Q259A3 (UniProt);InterPro=Domain of unknown function DUF2296 (IPR019273);NIAS_FLcDNA=001-047-F09;Expression=AK062248;TENOR=Os04t0672900-02;KEGG=Os04t0672900-02
Chr04	irgsp1_rep	five_prime_UTR	34342695	34342805	.	+	.	Parent=Os04t0672900-02
Chr04	irgsp1_rep	CDS	34342806	34343081	.	+	0	Parent=Os04t0672900-02
Chr04	irgsp1_rep	CDS	34343500	34343644	.	+	0	Parent=Os04t0672900-02
Chr04	irgsp1_rep	CDS	34344085	34344194	.	+	2	Parent=Os04t0672900-02
Chr04	irgsp1_rep	CDS	34344315	34344714	.	+	0	Parent=Os04t0672900-02
Chr04	irgsp1_rep	CDS	34344785	34345200	.	+	2	Parent=Os04t0672900-02
Chr04	irgsp1_rep	three_prime_UTR	34345201	34345315	.	+	.	Parent=Os04t0672900-02
Chr04	irgsp1_rep	mRNA	34346576	34352326	.	-	.	ID=Os04t0673000-01;Name=Os04t0673000-01;Locus_id=Os04g0673000;Note=Similar to H0322F07.7 protein.;Transcript_evidence=AK068390 (DDBJ%2C Best hit);ORF_evidence=Q259A2 (UniProt);InterPro=Protein of unknown function DUF3755 (IPR022228);NIAS_FLcDNA=J013147K07;TENOR=Os04t0673000-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34351892	34352326	.	-	.	Parent=Os04t0673000-01
Chr04	irgsp1_rep	five_prime_UTR	34351462	34351542	.	-	.	Parent=Os04t0673000-01
Chr04	irgsp1_rep	CDS	34351118	34351461	.	-	0	Parent=Os04t0673000-01
Chr04	irgsp1_rep	CDS	34350549	34350648	.	-	1	Parent=Os04t0673000-01
Chr04	irgsp1_rep	CDS	34349628	34349690	.	-	0	Parent=Os04t0673000-01
Chr04	irgsp1_rep	CDS	34349415	34349541	.	-	0	Parent=Os04t0673000-01
Chr04	irgsp1_rep	CDS	34348266	34348357	.	-	2	Parent=Os04t0673000-01
Chr04	irgsp1_rep	CDS	34347764	34347825	.	-	0	Parent=Os04t0673000-01
Chr04	irgsp1_rep	CDS	34347369	34347465	.	-	1	Parent=Os04t0673000-01
Chr04	irgsp1_rep	CDS	34347133	34347189	.	-	0	Parent=Os04t0673000-01
Chr04	irgsp1_rep	three_prime_UTR	34346576	34347132	.	-	.	Parent=Os04t0673000-01
Chr04	irgsp1_rep	mRNA	34347119	34352319	.	-	.	ID=Os04t0673000-02;Name=Os04t0673000-02;Locus_id=Os04g0673000;Note=Homeodomain-like containing protein.;Transcript_evidence=AK064182 (DDBJ%2C Best hit);ORF_evidence=Q259A2 (UniProt);InterPro=Protein of unknown function DUF3755 (IPR022228);NIAS_FLcDNA=002-104-B08;Expression=AK064182;TENOR=Os04t0673000-02;KEGG=Os04t0673000-02
Chr04	irgsp1_rep	five_prime_UTR	34351892	34352319	.	-	.	Parent=Os04t0673000-02
Chr04	irgsp1_rep	five_prime_UTR	34351462	34351542	.	-	.	Parent=Os04t0673000-02
Chr04	irgsp1_rep	CDS	34351269	34351461	.	-	0	Parent=Os04t0673000-02
Chr04	irgsp1_rep	CDS	34351118	34351148	.	-	2	Parent=Os04t0673000-02
Chr04	irgsp1_rep	CDS	34350549	34350648	.	-	1	Parent=Os04t0673000-02
Chr04	irgsp1_rep	CDS	34349628	34349690	.	-	0	Parent=Os04t0673000-02
Chr04	irgsp1_rep	CDS	34349415	34349541	.	-	0	Parent=Os04t0673000-02
Chr04	irgsp1_rep	CDS	34348266	34348357	.	-	2	Parent=Os04t0673000-02
Chr04	irgsp1_rep	CDS	34347764	34347825	.	-	0	Parent=Os04t0673000-02
Chr04	irgsp1_rep	CDS	34347351	34347465	.	-	1	Parent=Os04t0673000-02
Chr04	irgsp1_rep	three_prime_UTR	34347332	34347350	.	-	.	Parent=Os04t0673000-02
Chr04	irgsp1_rep	three_prime_UTR	34347119	34347189	.	-	.	Parent=Os04t0673000-02
Chr04	irgsp1_rep	mRNA	34346555	34351760	.	-	.	ID=Os04t0673000-03;Name=Os04t0673000-03;Locus_id=Os04g0673000;Note=Similar to H0322F07.7 protein.;Transcript_evidence=AK066211 (DDBJ%2C Best hit);ORF_evidence=Q259A2 (UniProt);InterPro=Protein of unknown function DUF3755 (IPR022228);NIAS_FLcDNA=J013057D02;TENOR=Os04t0673000-03;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34351462	34351760	.	-	.	Parent=Os04t0673000-03
Chr04	irgsp1_rep	CDS	34351118	34351461	.	-	0	Parent=Os04t0673000-03
Chr04	irgsp1_rep	CDS	34350549	34350648	.	-	1	Parent=Os04t0673000-03
Chr04	irgsp1_rep	CDS	34349628	34349690	.	-	0	Parent=Os04t0673000-03
Chr04	irgsp1_rep	CDS	34349415	34349541	.	-	0	Parent=Os04t0673000-03
Chr04	irgsp1_rep	CDS	34348266	34348354	.	-	2	Parent=Os04t0673000-03
Chr04	irgsp1_rep	CDS	34347764	34347825	.	-	0	Parent=Os04t0673000-03
Chr04	irgsp1_rep	CDS	34347369	34347465	.	-	1	Parent=Os04t0673000-03
Chr04	irgsp1_rep	CDS	34347133	34347189	.	-	0	Parent=Os04t0673000-03
Chr04	irgsp1_rep	three_prime_UTR	34346555	34347132	.	-	.	Parent=Os04t0673000-03
Chr04	irgsp1_rep	mRNA	34347367	34351278	.	+	.	ID=Os04t0673050-00;Name=Os04t0673050-00;Locus_id=Os04g0673050;Note=Non-protein coding transcript.;Transcript_evidence=tplb0055d06 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os04t0673050-00
Chr04	irgsp1_rep	exon	34347367	34347497	.	+	.	Parent=Os04t0673050-00
Chr04	irgsp1_rep	exon	34348232	34348353	.	+	.	Parent=Os04t0673050-00
Chr04	irgsp1_rep	exon	34349414	34349541	.	+	.	Parent=Os04t0673050-00
Chr04	irgsp1_rep	exon	34349628	34349698	.	+	.	Parent=Os04t0673050-00
Chr04	irgsp1_rep	exon	34350554	34350654	.	+	.	Parent=Os04t0673050-00
Chr04	irgsp1_rep	exon	34351126	34351278	.	+	.	Parent=Os04t0673050-00
Chr04	irgsp1_rep	mRNA	34375978	34377092	.	+	.	ID=Os04t0673300-01;Name=Os04t0673300-01;Locus_id=Os04g0673300;RAP-DB Gene Symbol Synonym(s)=RR6%2C OsRR6%2C rr6%2C Rra6%2C OsRRA6;RAP-DB Gene Name Synonym(s)=A-TYPE RESPONSE REGULATOR 6%2C A-TYPE response regulator 6%2C Type A response regulator 6%2C A-type RR 6;CGSNL Gene Symbol=RR6;CGSNL Gene Name=A-TYPE RESPONSE REGULATOR 6;Oryzabase Gene Symbol Synonym(s)=OsRR6%2C rr6%2C Rra6%2C OsRRA6;Oryzabase Gene Name Synonym(s)=A-TYPE response regulator 6%2C Type A response regulator 6%2C A-type RR 6;Note=A-type response regulator%2C Cytokinin signaling;Transcript_evidence=AK059734 (Genbank),AB249653 (Genbank),BR000315 (Genbank);ORF_evidence=Q7XQA6 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: two-component response regulator activity (GO:0000156);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),CheY-like superfamily (IPR011006);NIAS_FLcDNA=006-202-B01;Manual Curation=April 22%2C 2010;Literature_PMID=16919402,16472405,17293362;Oryzabase=8163;Expression=AK059734;TENOR=Os04t0673300-01;KEGG=Os04t0673300-01
Chr04	irgsp1_rep	five_prime_UTR	34375978	34376079	.	+	.	Parent=Os04t0673300-01
Chr04	irgsp1_rep	CDS	34376080	34376436	.	+	0	Parent=Os04t0673300-01
Chr04	irgsp1_rep	CDS	34376541	34376696	.	+	0	Parent=Os04t0673300-01
Chr04	irgsp1_rep	three_prime_UTR	34376697	34377092	.	+	.	Parent=Os04t0673300-01
Chr04	irgsp1_rep	mRNA	34383659	34387897	.	-	.	ID=Os04t0673400-01;Name=Os04t0673400-01;Locus_id=Os04g0673400;Oryzabase Gene Symbol Synonym(s)=Ung;Oryzabase Gene Name Synonym(s)=Uracil-N-Glycosylase;Note=Similar to Uracil-DNA glycosylase.;Transcript_evidence=AK287652 (DDBJ%2C Best hit);ORF_evidence=D0ABD0 (UniProt);GO=Biological Process: DNA repair (GO:0006281),Biological Process: base-excision repair (GO:0006284),Molecular Function: uracil DNA N-glycosylase activity (GO:0004844),Molecular Function: hydrolase activity%2C hydrolyzing N-glycosyl compounds (GO:0016799);InterPro=Uracil-DNA glycosylase (IPR002043),Uracil-DNA glycosylase-like (IPR005122),Uracil-DNA glycosylase%2C active site (IPR018085);NIAS_FLcDNA=J065096C22;Oryzabase=21262;TENOR=Os04t0673400-01;KEGG=Os04t0673400-01 (EC:3.2.2.-)
Chr04	irgsp1_rep	five_prime_UTR	34387764	34387897	.	-	.	Parent=Os04t0673400-01
Chr04	irgsp1_rep	CDS	34387550	34387763	.	-	0	Parent=Os04t0673400-01
Chr04	irgsp1_rep	CDS	34387240	34387460	.	-	2	Parent=Os04t0673400-01
Chr04	irgsp1_rep	CDS	34386093	34386251	.	-	0	Parent=Os04t0673400-01
Chr04	irgsp1_rep	CDS	34385671	34385701	.	-	0	Parent=Os04t0673400-01
Chr04	irgsp1_rep	CDS	34384810	34384945	.	-	2	Parent=Os04t0673400-01
Chr04	irgsp1_rep	CDS	34384601	34384684	.	-	1	Parent=Os04t0673400-01
Chr04	irgsp1_rep	CDS	34383850	34383916	.	-	1	Parent=Os04t0673400-01
Chr04	irgsp1_rep	three_prime_UTR	34383659	34383849	.	-	.	Parent=Os04t0673400-01
Chr04	irgsp1_rep	mRNA	34393259	34396555	.	+	.	ID=Os04t0673700-01;Name=Os04t0673700-01;Locus_id=Os04g0673700;Note=Hypothetical protein.;Transcript_evidence=AK102171 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033086I09;Oryzabase=20470;Expression=AK102171;TENOR=Os04t0673700-01;KEGG=Os04t0673700-01
Chr04	irgsp1_rep	five_prime_UTR	34393259	34393706	.	+	.	Parent=Os04t0673700-01
Chr04	irgsp1_rep	CDS	34393707	34393935	.	+	0	Parent=Os04t0673700-01
Chr04	irgsp1_rep	CDS	34394787	34394833	.	+	2	Parent=Os04t0673700-01
Chr04	irgsp1_rep	three_prime_UTR	34394834	34394893	.	+	.	Parent=Os04t0673700-01
Chr04	irgsp1_rep	three_prime_UTR	34395859	34395930	.	+	.	Parent=Os04t0673700-01
Chr04	irgsp1_rep	three_prime_UTR	34396350	34396555	.	+	.	Parent=Os04t0673700-01
Chr04	irgsp1_rep	mRNA	34393265	34396566	.	+	.	ID=Os04t0673700-02;Name=Os04t0673700-02;Locus_id=Os04g0673700;Note=Hypothetical protein.;Transcript_evidence=AK105405 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-123-E06;Oryzabase=20470;Expression=AK105405;TENOR=Os04t0673700-02;KEGG=Os04t0673700-02
Chr04	irgsp1_rep	five_prime_UTR	34393265	34393706	.	+	.	Parent=Os04t0673700-02
Chr04	irgsp1_rep	CDS	34393707	34393935	.	+	0	Parent=Os04t0673700-02
Chr04	irgsp1_rep	CDS	34394787	34394833	.	+	2	Parent=Os04t0673700-02
Chr04	irgsp1_rep	three_prime_UTR	34394834	34394893	.	+	.	Parent=Os04t0673700-02
Chr04	irgsp1_rep	three_prime_UTR	34395859	34396566	.	+	.	Parent=Os04t0673700-02
Chr04	irgsp1_rep	mRNA	34397149	34398174	.	-	.	ID=Os04t0673800-01;Name=Os04t0673800-01;Locus_id=Os04g0673800;CGSNL Gene Symbol=ENODL14;CGSNL Gene Name=EARLY NODULIN LIKE PROTEIN 14;Oryzabase Gene Symbol Synonym(s)=OsENODL14;Oryzabase Gene Name Synonym(s)=early nodulin-like protein 14;Note=Cupredoxin domain containing protein.;Transcript_evidence=AK071236 (DDBJ%2C Best hit);ORF_evidence=Q259S3 (UniProt);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);NIAS_FLcDNA=J023082A20;Oryzabase=9739;Expression=AK071236;TENOR=Os04t0673800-01;KEGG=Os04t0673800-01
Chr04	irgsp1_rep	five_prime_UTR	34398158	34398174	.	-	.	Parent=Os04t0673800-01
Chr04	irgsp1_rep	CDS	34397962	34398157	.	-	0	Parent=Os04t0673800-01
Chr04	irgsp1_rep	CDS	34397356	34397702	.	-	2	Parent=Os04t0673800-01
Chr04	irgsp1_rep	three_prime_UTR	34397149	34397355	.	-	.	Parent=Os04t0673800-01
Chr04	irgsp1_rep	mRNA	34400107	34401448	.	-	.	ID=Os04t0674000-01;Name=Os04t0674000-01;Locus_id=Os04g0674000;Note=Similar to H0403D02.10 protein.;Transcript_evidence=AK109377 (DDBJ%2C Best hit);ORF_evidence=Q259S8 (UniProt);NIAS_FLcDNA=006-209-G02;TENOR=Os04t0674000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34401447	34401448	.	-	.	Parent=Os04t0674000-01
Chr04	irgsp1_rep	CDS	34401114	34401446	.	-	0	Parent=Os04t0674000-01
Chr04	irgsp1_rep	CDS	34400434	34400916	.	-	0	Parent=Os04t0674000-01
Chr04	irgsp1_rep	three_prime_UTR	34400107	34400433	.	-	.	Parent=Os04t0674000-01
Chr04	irgsp1_rep	mRNA	34400083	34401448	.	-	.	ID=Os04t0674000-03;Name=Os04t0674000-03;Locus_id=Os04g0674000;Note=Similar to H0403D02.10 protein.;Transcript_evidence=AK119671 (DDBJ%2C Best hit),AK071276 (DDBJ%2C Best hit);ORF_evidence=Q259S8 (UniProt);NIAS_FLcDNA=002-149-H08,J023088F18;TENOR=Os04t0674000-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34401396	34401448	.	-	.	Parent=Os04t0674000-03
Chr04	irgsp1_rep	CDS	34400430	34401395	.	-	0	Parent=Os04t0674000-03
Chr04	irgsp1_rep	three_prime_UTR	34400083	34400429	.	-	.	Parent=Os04t0674000-03
Chr04	irgsp1_rep	mRNA	34402956	34403287	.	-	.	ID=Os04t0674025-00;Name=Os04t0674025-00;Locus_id=Os04g0674025;Note=Similar to H0403D02.10 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q259S8 (UniProt);TENOR=Os04t0674025-00;KEGG=Os04t0674025-00
Chr04	irgsp1_rep	CDS	34403201	34403287	.	-	0	Parent=Os04t0674025-00
Chr04	irgsp1_rep	CDS	34402956	34403102	.	-	0	Parent=Os04t0674025-00
Chr04	irgsp1_rep	mRNA	34410429	34413185	.	-	.	ID=Os04t0674100-01;Name=Os04t0674100-01;Locus_id=Os04g0674100;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK288533 (DDBJ%2C Best hit);ORF_evidence=Q259S2 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide TPR-1 (IPR001440),Tetratricopeptide-like helical (IPR011990),Thioredoxin-like fold (IPR012336),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J090045E03;TENOR=Os04t0674100-01;KEGG=Os04t0674100-01
Chr04	irgsp1_rep	five_prime_UTR	34413151	34413185	.	-	.	Parent=Os04t0674100-01
Chr04	irgsp1_rep	CDS	34412713	34413150	.	-	0	Parent=Os04t0674100-01
Chr04	irgsp1_rep	CDS	34412491	34412540	.	-	0	Parent=Os04t0674100-01
Chr04	irgsp1_rep	CDS	34412228	34412315	.	-	1	Parent=Os04t0674100-01
Chr04	irgsp1_rep	CDS	34410846	34410962	.	-	0	Parent=Os04t0674100-01
Chr04	irgsp1_rep	CDS	34410697	34410756	.	-	0	Parent=Os04t0674100-01
Chr04	irgsp1_rep	three_prime_UTR	34410429	34410696	.	-	.	Parent=Os04t0674100-01
Chr04	irgsp1_rep	mRNA	34411231	34413183	.	-	.	ID=Os04t0674100-02;Name=Os04t0674100-02;Locus_id=Os04g0674100;Note=Similar to H0403D02.12 protein.;Transcript_evidence=AK242456 (DDBJ%2C Best hit);ORF_evidence=Q259S2 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Tetratricopeptide-like helical (IPR011990),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=J080097J12;TENOR=Os04t0674100-02;KEGG=Os04t0674100-02
Chr04	irgsp1_rep	five_prime_UTR	34413151	34413183	.	-	.	Parent=Os04t0674100-02
Chr04	irgsp1_rep	CDS	34412713	34413150	.	-	0	Parent=Os04t0674100-02
Chr04	irgsp1_rep	CDS	34412491	34412540	.	-	0	Parent=Os04t0674100-02
Chr04	irgsp1_rep	CDS	34412228	34412315	.	-	1	Parent=Os04t0674100-02
Chr04	irgsp1_rep	CDS	34411699	34411770	.	-	0	Parent=Os04t0674100-02
Chr04	irgsp1_rep	three_prime_UTR	34411231	34411698	.	-	.	Parent=Os04t0674100-02
Chr04	irgsp1_rep	mRNA	34413441	34415641	.	+	.	ID=Os04t0674200-01;Name=Os04t0674200-01;Locus_id=Os04g0674200;Note=Coenzyme Q biosynthesis Coq4 family protein.;Transcript_evidence=AK103795 (DDBJ%2C Best hit),AK101965 (DDBJ%2C Best hit);ORF_evidence=Q259S1 (UniProt);GO=Biological Process: ubiquinone biosynthetic process (GO:0006744);InterPro=Coenzyme Q biosynthesis Coq4 (IPR007715);NIAS_FLcDNA=J033145P04,J033076F14;TENOR=Os04t0674200-01
Chr04	irgsp1_rep	five_prime_UTR	34413441	34413629	.	+	.	Parent=Os04t0674200-01
Chr04	irgsp1_rep	five_prime_UTR	34414094	34414097	.	+	.	Parent=Os04t0674200-01
Chr04	irgsp1_rep	CDS	34414098	34414277	.	+	0	Parent=Os04t0674200-01
Chr04	irgsp1_rep	CDS	34414832	34415335	.	+	0	Parent=Os04t0674200-01
Chr04	irgsp1_rep	three_prime_UTR	34415336	34415641	.	+	.	Parent=Os04t0674200-01
Chr04	irgsp1_rep	mRNA	34416120	34420309	.	-	.	ID=Os04t0674300-01;Name=Os04t0674300-01;Locus_id=Os04g0674300;Note=NPH3 domain containing protein.;Transcript_evidence=AK119773 (DDBJ%2C Best hit);ORF_evidence=Q259S0 (UniProt);GO=Biological Process: response to light stimulus (GO:0009416),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),NPH3 (IPR004249),BTB/POZ fold (IPR011333);NIAS_FLcDNA=002-172-F05;Expression=AK119773;TENOR=Os04t0674300-01;KEGG=Os04t0674300-01
Chr04	irgsp1_rep	five_prime_UTR	34420268	34420309	.	-	.	Parent=Os04t0674300-01
Chr04	irgsp1_rep	CDS	34420205	34420267	.	-	0	Parent=Os04t0674300-01
Chr04	irgsp1_rep	CDS	34418942	34420114	.	-	0	Parent=Os04t0674300-01
Chr04	irgsp1_rep	CDS	34416276	34416740	.	-	0	Parent=Os04t0674300-01
Chr04	irgsp1_rep	three_prime_UTR	34416120	34416275	.	-	.	Parent=Os04t0674300-01
Chr04	irgsp1_rep	mRNA	34416132	34419506	.	-	.	ID=Os04t0674300-02;Name=Os04t0674300-02;Locus_id=Os04g0674300;Note=Similar to H0403D02.14 protein.;Transcript_evidence=AK059048 (DDBJ%2C Best hit);ORF_evidence=Q259S0 (UniProt);GO=Biological Process: response to light stimulus (GO:0009416),Molecular Function: signal transducer activity (GO:0004871);InterPro=NPH3 (IPR004249);NIAS_FLcDNA=001-021-D12;Expression=AK059048;TENOR=Os04t0674300-02;KEGG=Os04t0674300-02
Chr04	irgsp1_rep	five_prime_UTR	34419506	34419506	.	-	.	Parent=Os04t0674300-02
Chr04	irgsp1_rep	CDS	34418942	34419505	.	-	0	Parent=Os04t0674300-02
Chr04	irgsp1_rep	CDS	34416276	34416740	.	-	0	Parent=Os04t0674300-02
Chr04	irgsp1_rep	three_prime_UTR	34416132	34416275	.	-	.	Parent=Os04t0674300-02
Chr04	irgsp1_rep	mRNA	34422248	34423285	.	-	.	ID=Os04t0674350-01;Name=Os04t0674350-01;Locus_id=Os04g0674350;Note=Conserved hypothetical protein.;Transcript_evidence=AK241498 (DDBJ%2C Best hit);ORF_evidence=NP_001174139.1 (RefSeq);NIAS_FLcDNA=J065167I12;TENOR=Os04t0674350-01;KEGG=Os04t0674350-01
Chr04	irgsp1_rep	five_prime_UTR	34423250	34423285	.	-	.	Parent=Os04t0674350-01
Chr04	irgsp1_rep	CDS	34423056	34423249	.	-	0	Parent=Os04t0674350-01
Chr04	irgsp1_rep	CDS	34422819	34422921	.	-	1	Parent=Os04t0674350-01
Chr04	irgsp1_rep	three_prime_UTR	34422248	34422818	.	-	.	Parent=Os04t0674350-01
Chr04	irgsp1_rep	mRNA	34423647	34426231	.	+	.	ID=Os04t0674400-01;Name=Os04t0674400-01;Locus_id=Os04g0674400;Note=Similar to Anamorsin (Cytokine induced apoptosis inhibitor 1) (CUA001). Splice isoform 2.;Transcript_evidence=AK102124 (DDBJ%2C Best hit);ORF_evidence=B8ARI7 (UniProt);InterPro=Cytokine-induced anti-apoptosis inhibitor 1 (IPR007785);NIAS_FLcDNA=J033084O13;Expression=AK102124;TENOR=Os04t0674400-01;KEGG=Os04t0674400-01
Chr04	irgsp1_rep	five_prime_UTR	34423647	34423702	.	+	.	Parent=Os04t0674400-01
Chr04	irgsp1_rep	five_prime_UTR	34423819	34423840	.	+	.	Parent=Os04t0674400-01
Chr04	irgsp1_rep	CDS	34423841	34423976	.	+	0	Parent=Os04t0674400-01
Chr04	irgsp1_rep	CDS	34424626	34424780	.	+	2	Parent=Os04t0674400-01
Chr04	irgsp1_rep	CDS	34424861	34424956	.	+	0	Parent=Os04t0674400-01
Chr04	irgsp1_rep	CDS	34425035	34425194	.	+	0	Parent=Os04t0674400-01
Chr04	irgsp1_rep	CDS	34425280	34425416	.	+	2	Parent=Os04t0674400-01
Chr04	irgsp1_rep	CDS	34425515	34425589	.	+	0	Parent=Os04t0674400-01
Chr04	irgsp1_rep	CDS	34425691	34425729	.	+	0	Parent=Os04t0674400-01
Chr04	irgsp1_rep	three_prime_UTR	34425730	34426231	.	+	.	Parent=Os04t0674400-01
Chr04	irgsp1_rep	mRNA	34424625	34425583	.	-	.	ID=Os04t0674425-00;Name=Os04t0674425-00;Locus_id=Os04g0674425;Note=Non-protein coding transcript.;Transcript_evidence=BT086960 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0674425-00
Chr04	irgsp1_rep	exon	34425515	34425583	.	-	.	Parent=Os04t0674425-00
Chr04	irgsp1_rep	exon	34425277	34425416	.	-	.	Parent=Os04t0674425-00
Chr04	irgsp1_rep	exon	34425029	34425197	.	-	.	Parent=Os04t0674425-00
Chr04	irgsp1_rep	exon	34424831	34424954	.	-	.	Parent=Os04t0674425-00
Chr04	irgsp1_rep	exon	34424625	34424750	.	-	.	Parent=Os04t0674425-00
Chr04	irgsp1_rep	mRNA	34427913	34431452	.	+	.	ID=Os04t0674450-00;Name=Os04t0674450-00;Locus_id=Os04g0674450;Note=Similar to DHHC zinc finger domain containing protein.;Transcript_evidence=AK376242 (DDBJ);ORF_evidence=NP_001147996.1 (RefSeq);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C DHHC-type%2C palmitoyltransferase (IPR001594);TENOR=Os04t0674450-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34427913	34428021	.	+	.	Parent=Os04t0674450-00
Chr04	irgsp1_rep	five_prime_UTR	34429127	34429252	.	+	.	Parent=Os04t0674450-00
Chr04	irgsp1_rep	CDS	34429253	34429361	.	+	0	Parent=Os04t0674450-00
Chr04	irgsp1_rep	CDS	34429486	34429784	.	+	2	Parent=Os04t0674450-00
Chr04	irgsp1_rep	CDS	34429884	34430375	.	+	0	Parent=Os04t0674450-00
Chr04	irgsp1_rep	three_prime_UTR	34430376	34430564	.	+	.	Parent=Os04t0674450-00
Chr04	irgsp1_rep	three_prime_UTR	34431089	34431452	.	+	.	Parent=Os04t0674450-00
Chr04	irgsp1_rep	mRNA	34436658	34438707	.	+	.	ID=Os04t0674500-01;Name=Os04t0674500-01;Locus_id=Os04g0674500;Note=Hypothetical protein.;Transcript_evidence=AK120940 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023037H21;Expression=AK120940;TENOR=Os04t0674500-01;KEGG=Os04t0674500-01
Chr04	irgsp1_rep	five_prime_UTR	34436658	34437835	.	+	.	Parent=Os04t0674500-01
Chr04	irgsp1_rep	CDS	34437836	34438195	.	+	0	Parent=Os04t0674500-01
Chr04	irgsp1_rep	three_prime_UTR	34438196	34438707	.	+	.	Parent=Os04t0674500-01
Chr04	irgsp1_rep	mRNA	34440331	34444073	.	-	.	ID=Os04t0674600-01;Name=Os04t0674600-01;Locus_id=Os04g0674600;CGSNL Gene Symbol=YSL10;CGSNL Gene Name=YELLOW STRIP-LIKE GENE 10;Oryzabase Gene Symbol Synonym(s)=OsYSL10;Oryzabase Gene Name Synonym(s)=rice YSL (yellow stripe-like) gene 10%2C Probable metal-nicotianamine transporter YSL10%2C Protein YELLOW STRIPE LIKE 10%2C yellow stripe 1-like transporter 10;Note=Similar to H0103C06.1 protein.;Transcript_evidence=AK069645 (DDBJ%2C Best hit);ORF_evidence=Q259I1 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085);InterPro=Oligopeptide transporter OPT superfamily (IPR004813);NIAS_FLcDNA=J023027O16;Oryzabase=8351;TENOR=Os04t0674600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34444007	34444073	.	-	.	Parent=Os04t0674600-01
Chr04	irgsp1_rep	CDS	34443649	34444006	.	-	0	Parent=Os04t0674600-01
Chr04	irgsp1_rep	CDS	34442654	34442817	.	-	2	Parent=Os04t0674600-01
Chr04	irgsp1_rep	CDS	34442436	34442533	.	-	0	Parent=Os04t0674600-01
Chr04	irgsp1_rep	CDS	34442195	34442329	.	-	1	Parent=Os04t0674600-01
Chr04	irgsp1_rep	CDS	34441759	34441948	.	-	1	Parent=Os04t0674600-01
Chr04	irgsp1_rep	CDS	34440572	34441687	.	-	0	Parent=Os04t0674600-01
Chr04	irgsp1_rep	three_prime_UTR	34440331	34440571	.	-	.	Parent=Os04t0674600-01
Chr04	irgsp1_rep	mRNA	34444832	34446814	.	-	.	ID=Os04t0674700-01;Name=Os04t0674700-01;Locus_id=Os04g0674700;RAP-DB Gene Symbol Synonym(s)=OsBIABP1;RAP-DB Gene Name Synonym(s)=BTH-induced AMP-binding protein 1;Note=AMP-binding protein%2C Regulation of disease resistance response;Transcript_evidence=AK106615;ORF_evidence=Q7XQ93;GO=Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase-like superfamily (IPR042099),AMP-dependent synthetase/ligase (IPR000873),AMP-binding enzyme%2C C-terminal domain (IPR025110),AMP-binding%2C conserved site (IPR020845);NIAS_FLcDNA=002-112-H10;Manual Curation=November 2%2C 2020;Literature_PMID=19816997;Expression=AK106615;TENOR=Os04t0674700-01;KEGG=Os04t0674700-01
Chr04	irgsp1_rep	five_prime_UTR	34446721	34446814	.	-	.	Parent=Os04t0674700-01
Chr04	irgsp1_rep	CDS	34446520	34446720	.	-	0	Parent=Os04t0674700-01
Chr04	irgsp1_rep	CDS	34444958	34446433	.	-	0	Parent=Os04t0674700-01
Chr04	irgsp1_rep	three_prime_UTR	34444832	34444957	.	-	.	Parent=Os04t0674700-01
Chr04	irgsp1_rep	mRNA	34445022	34446437	.	+	.	ID=Os04t0674750-00;Name=Os04t0674750-00;Locus_id=Os04g0674750;Note=Hypothetical protein.;Transcript_evidence=EU941562 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0674750-00
Chr04	irgsp1_rep	five_prime_UTR	34445022	34445438	.	+	.	Parent=Os04t0674750-00
Chr04	irgsp1_rep	CDS	34445439	34446068	.	+	0	Parent=Os04t0674750-00
Chr04	irgsp1_rep	three_prime_UTR	34446069	34446437	.	+	.	Parent=Os04t0674750-00
Chr04	irgsp1_rep	mRNA	34450562	34454341	.	-	.	ID=Os04t0674800-01;Name=Os04t0674800-01;Locus_id=Os04g0674800;CGSNL Gene Symbol=GH9C1;CGSNL Gene Name=GLYCOSIDE HYDROLASE 9C1;Oryzabase Gene Symbol Synonym(s)=OsGH9C1;Oryzabase Gene Name Synonym(s)=glycoside hydrolase OsGH9C1%2C glycoside hydrolase 9C1;Note=Similar to CEL1%3DCELLULASE 1 (Fragment).;Transcript_evidence=AK119913 (DDBJ%2C Best hit);ORF_evidence=Q0J930 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Cellular Component: extracellular region (GO:0005576),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Glycoside hydrolase%2C family 9 (IPR001701),Six-hairpin glycosidase-like (IPR008928),Six-hairpin glycosidase (IPR012341),Glycoside hydrolase%2C family 9%2C active site (IPR018221),Carbohydrate binding domain CBM49 (IPR019028);NIAS_FLcDNA=002-183-F01;Oryzabase=11719;Expression=AK119913;TENOR=Os04t0674800-01;KEGG=Os04t0674800-01
Chr04	irgsp1_rep	five_prime_UTR	34454312	34454341	.	-	.	Parent=Os04t0674800-01
Chr04	irgsp1_rep	CDS	34454075	34454311	.	-	0	Parent=Os04t0674800-01
Chr04	irgsp1_rep	CDS	34453604	34453816	.	-	0	Parent=Os04t0674800-01
Chr04	irgsp1_rep	CDS	34453315	34453515	.	-	0	Parent=Os04t0674800-01
Chr04	irgsp1_rep	CDS	34452247	34452631	.	-	0	Parent=Os04t0674800-01
Chr04	irgsp1_rep	CDS	34451251	34451793	.	-	2	Parent=Os04t0674800-01
Chr04	irgsp1_rep	CDS	34450870	34451168	.	-	2	Parent=Os04t0674800-01
Chr04	irgsp1_rep	three_prime_UTR	34450562	34450869	.	-	.	Parent=Os04t0674800-01
Chr04	irgsp1_rep	mRNA	34451305	34454255	.	+	.	ID=Os04t0674900-00;Name=Os04t0674900-00;Locus_id=Os04g0674900;Note=Hypothetical protein.;Transcript_evidence=tplb0042g22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0674900-00
Chr04	irgsp1_rep	five_prime_UTR	34451305	34451759	.	+	.	Parent=Os04t0674900-00
Chr04	irgsp1_rep	CDS	34451760	34451779	.	+	0	Parent=Os04t0674900-00
Chr04	irgsp1_rep	CDS	34452232	34452613	.	+	1	Parent=Os04t0674900-00
Chr04	irgsp1_rep	CDS	34453297	34453506	.	+	0	Parent=Os04t0674900-00
Chr04	irgsp1_rep	CDS	34453593	34453649	.	+	0	Parent=Os04t0674900-00
Chr04	irgsp1_rep	three_prime_UTR	34453650	34453814	.	+	.	Parent=Os04t0674900-00
Chr04	irgsp1_rep	three_prime_UTR	34454073	34454255	.	+	.	Parent=Os04t0674900-00
Chr04	irgsp1_rep	mRNA	34457427	34463729	.	-	.	ID=Os04t0675000-01;Name=Os04t0675000-01;Locus_id=Os04g0675000;Note=Similar to H0103C06.5 protein.;Transcript_evidence=AK103357 (DDBJ%2C Best hit);ORF_evidence=Q259G9 (UniProt);InterPro=Protein of unknown function DUF789 (IPR008507);NIAS_FLcDNA=J033126L11;TENOR=Os04t0675000-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34463411	34463729	.	-	.	Parent=Os04t0675000-01
Chr04	irgsp1_rep	five_prime_UTR	34462129	34462134	.	-	.	Parent=Os04t0675000-01
Chr04	irgsp1_rep	CDS	34462012	34462128	.	-	0	Parent=Os04t0675000-01
Chr04	irgsp1_rep	CDS	34461868	34461917	.	-	0	Parent=Os04t0675000-01
Chr04	irgsp1_rep	CDS	34459319	34461664	.	-	1	Parent=Os04t0675000-01
Chr04	irgsp1_rep	CDS	34458829	34458933	.	-	1	Parent=Os04t0675000-01
Chr04	irgsp1_rep	CDS	34458533	34458707	.	-	1	Parent=Os04t0675000-01
Chr04	irgsp1_rep	CDS	34457809	34458024	.	-	0	Parent=Os04t0675000-01
Chr04	irgsp1_rep	three_prime_UTR	34457427	34457808	.	-	.	Parent=Os04t0675000-01
Chr04	irgsp1_rep	mRNA	34462817	34463720	.	-	.	ID=Os04t0675000-02;Name=Os04t0675000-02;Locus_id=Os04g0675000;Note=Hypothetical gene.;Transcript_evidence=AK110650 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-169-D12;Expression=AK110650;TENOR=Os04t0675000-02;KEGG=Os04t0675000-02
Chr04	irgsp1_rep	CDS	34463493	34463720	.	-	0	Parent=Os04t0675000-02
Chr04	irgsp1_rep	three_prime_UTR	34462817	34463492	.	-	.	Parent=Os04t0675000-02
Chr04	irgsp1_rep	mRNA	34457067	34457534	.	-	.	ID=Os04t0675000-03;Name=Os04t0675000-03;Locus_id=Os04g0675000;Note=Non-protein coding transcript.;Transcript_evidence=AK063870 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-122-E08;TENOR=Os04t0675000-03
Chr04	irgsp1_rep	exon	34457067	34457534	.	-	.	Parent=Os04t0675000-03
Chr04	irgsp1_rep	mRNA	34468893	34476991	.	+	.	ID=Os04t0675101-00;Name=Os04t0675101-00;Locus_id=Os04g0675101;Note=ATPase-like%2C ATP-binding domain domain containing protein.;Transcript_evidence=BT066996 (DDBJ);ORF_evidence=B9FDA1 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=ATPase-like%2C ATP-binding domain (IPR003594);TENOR=Os04t0675101-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34468893	34468951	.	+	.	Parent=Os04t0675101-00
Chr04	irgsp1_rep	CDS	34468952	34469286	.	+	0	Parent=Os04t0675101-00
Chr04	irgsp1_rep	CDS	34469867	34470596	.	+	1	Parent=Os04t0675101-00
Chr04	irgsp1_rep	CDS	34470956	34476991	.	+	0	Parent=Os04t0675101-00
Chr04	irgsp1_rep	mRNA	34479121	34485639	.	+	.	ID=Os04t0675200-01;Name=Os04t0675200-01;Locus_id=Os04g0675200;Note=Similar to H0103C06.6 protein.;Transcript_evidence=AK121874 (DDBJ%2C Best hit);ORF_evidence=Q259H3 (UniProt);NIAS_FLcDNA=J033104G02;TENOR=Os04t0675200-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34479121	34479121	.	+	.	Parent=Os04t0675200-01
Chr04	irgsp1_rep	CDS	34479122	34479242	.	+	0	Parent=Os04t0675200-01
Chr04	irgsp1_rep	CDS	34479626	34479843	.	+	2	Parent=Os04t0675200-01
Chr04	irgsp1_rep	CDS	34480624	34480895	.	+	0	Parent=Os04t0675200-01
Chr04	irgsp1_rep	CDS	34481055	34484058	.	+	1	Parent=Os04t0675200-01
Chr04	irgsp1_rep	CDS	34484134	34484266	.	+	0	Parent=Os04t0675200-01
Chr04	irgsp1_rep	CDS	34485462	34485639	.	+	2	Parent=Os04t0675200-01
Chr04	irgsp1_rep	mRNA	34486464	34488050	.	+	.	ID=Os04t0675300-01;Name=Os04t0675300-01;Locus_id=Os04g0675300;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK101752 (DDBJ%2C Best hit);ORF_evidence=Q259H3 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J033063D14;Expression=AK101752;TENOR=Os04t0675300-01;KEGG=Os04t0675300-01
Chr04	irgsp1_rep	five_prime_UTR	34486464	34486464	.	+	.	Parent=Os04t0675300-01
Chr04	irgsp1_rep	CDS	34486465	34486980	.	+	0	Parent=Os04t0675300-01
Chr04	irgsp1_rep	CDS	34487060	34487233	.	+	0	Parent=Os04t0675300-01
Chr04	irgsp1_rep	CDS	34487698	34487895	.	+	0	Parent=Os04t0675300-01
Chr04	irgsp1_rep	three_prime_UTR	34487896	34488050	.	+	.	Parent=Os04t0675300-01
Chr04	irgsp1_rep	mRNA	34486742	34488014	.	+	.	ID=Os04t0675300-02;Name=Os04t0675300-02;Locus_id=Os04g0675300;Note=Similar to H0103C06.6 protein.;Transcript_evidence=AK111982 (DDBJ%2C Best hit);ORF_evidence=Q259H3 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=001-012-E09;Expression=AK111982;TENOR=Os04t0675300-02;KEGG=Os04t0675300-02
Chr04	irgsp1_rep	five_prime_UTR	34486742	34486743	.	+	.	Parent=Os04t0675300-02
Chr04	irgsp1_rep	CDS	34486744	34486980	.	+	0	Parent=Os04t0675300-02
Chr04	irgsp1_rep	CDS	34487060	34487233	.	+	0	Parent=Os04t0675300-02
Chr04	irgsp1_rep	CDS	34487698	34487895	.	+	0	Parent=Os04t0675300-02
Chr04	irgsp1_rep	three_prime_UTR	34487896	34488014	.	+	.	Parent=Os04t0675300-02
Chr04	irgsp1_rep	mRNA	34489930	34492036	.	+	.	ID=Os04t0675400-01;Name=Os04t0675400-01;Locus_id=Os04g0675400;Oryzabase Gene Symbol Synonym(s)=OsDjC45;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C45%2C rice DJC77 homolog;Note=Similar to Chaperone protein dnaJ.;Transcript_evidence=AK068186 (DDBJ%2C Best hit);ORF_evidence=Q259H2 (UniProt);GO=Molecular Function: heat shock protein binding (GO:0031072);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623);NIAS_FLcDNA=J013134H18;Oryzabase=12202;Expression=AK068186;TENOR=Os04t0675400-01;KEGG=Os04t0675400-01
Chr04	irgsp1_rep	five_prime_UTR	34489930	34490009	.	+	.	Parent=Os04t0675400-01
Chr04	irgsp1_rep	CDS	34490010	34490387	.	+	0	Parent=Os04t0675400-01
Chr04	irgsp1_rep	CDS	34490487	34490743	.	+	0	Parent=Os04t0675400-01
Chr04	irgsp1_rep	CDS	34490854	34491037	.	+	1	Parent=Os04t0675400-01
Chr04	irgsp1_rep	CDS	34491180	34491821	.	+	0	Parent=Os04t0675400-01
Chr04	irgsp1_rep	three_prime_UTR	34491822	34492036	.	+	.	Parent=Os04t0675400-01
Chr04	irgsp1_rep	mRNA	34492078	34496501	.	-	.	ID=Os04t0675500-01;Name=Os04t0675500-01;Locus_id=Os04g0675500;Oryzabase Gene Symbol Synonym(s)=Stt3a%2C STT3;Oryzabase Gene Name Synonym(s)=oligosaccharyltransferase subunit Stt3a;Note=Similar to Itm1 protein.;Transcript_evidence=AK067609 (DDBJ%2C Best hit);ORF_evidence=Q259H1 (UniProt);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: oligosaccharyl transferase activity (GO:0004576);InterPro=Oligosaccharyl transferase%2C STT3 subunit (IPR003674);NIAS_FLcDNA=J013112I09;Oryzabase=10216;TENOR=Os04t0675500-01
Chr04	irgsp1_rep	five_prime_UTR	34496367	34496501	.	-	.	Parent=Os04t0675500-01
Chr04	irgsp1_rep	CDS	34495503	34496366	.	-	0	Parent=Os04t0675500-01
Chr04	irgsp1_rep	CDS	34494208	34494741	.	-	0	Parent=Os04t0675500-01
Chr04	irgsp1_rep	CDS	34493371	34493825	.	-	0	Parent=Os04t0675500-01
Chr04	irgsp1_rep	CDS	34493118	34493240	.	-	1	Parent=Os04t0675500-01
Chr04	irgsp1_rep	CDS	34492942	34493001	.	-	1	Parent=Os04t0675500-01
Chr04	irgsp1_rep	CDS	34492595	34492724	.	-	1	Parent=Os04t0675500-01
Chr04	irgsp1_rep	three_prime_UTR	34492078	34492594	.	-	.	Parent=Os04t0675500-01
Chr04	irgsp1_rep	mRNA	34492101	34492635	.	-	.	ID=Os04t0675500-02;Name=Os04t0675500-02;Locus_id=Os04g0675500;Oryzabase Gene Symbol Synonym(s)=Stt3a%2C STT3;Oryzabase Gene Name Synonym(s)=oligosaccharyltransferase subunit Stt3a;Note=Non-protein coding transcript.;Transcript_evidence=AK058537 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-017-B02;Oryzabase=10216;TENOR=Os04t0675500-02
Chr04	irgsp1_rep	exon	34492101	34492635	.	-	.	Parent=Os04t0675500-02
Chr04	irgsp1_rep	mRNA	34492095	34496450	.	-	.	ID=Os04t0675500-03;Name=Os04t0675500-03;Locus_id=Os04g0675500;Oryzabase Gene Symbol Synonym(s)=Stt3a%2C STT3;Oryzabase Gene Name Synonym(s)=oligosaccharyltransferase subunit Stt3a;Note=Similar to Itm1 protein.;Transcript_evidence=AK099138 (DDBJ%2C Best hit);ORF_evidence=Q259H1 (UniProt);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: oligosaccharyl transferase activity (GO:0004576);InterPro=Oligosaccharyl transferase%2C STT3 subunit (IPR003674);NIAS_FLcDNA=J023054H04;Oryzabase=10216;TENOR=Os04t0675500-03
Chr04	irgsp1_rep	five_prime_UTR	34496367	34496450	.	-	.	Parent=Os04t0675500-03
Chr04	irgsp1_rep	CDS	34495503	34496366	.	-	0	Parent=Os04t0675500-03
Chr04	irgsp1_rep	CDS	34494208	34494741	.	-	0	Parent=Os04t0675500-03
Chr04	irgsp1_rep	CDS	34493371	34493825	.	-	0	Parent=Os04t0675500-03
Chr04	irgsp1_rep	CDS	34493118	34493240	.	-	1	Parent=Os04t0675500-03
Chr04	irgsp1_rep	CDS	34492942	34493001	.	-	1	Parent=Os04t0675500-03
Chr04	irgsp1_rep	CDS	34492595	34492724	.	-	1	Parent=Os04t0675500-03
Chr04	irgsp1_rep	three_prime_UTR	34492095	34492594	.	-	.	Parent=Os04t0675500-03
Chr04	irgsp1_rep	mRNA	34498550	34499627	.	-	.	ID=Os04t0675600-01;Name=Os04t0675600-01;Locus_id=Os04g0675600;Note=Hypothetical conserved gene.;Transcript_evidence=AK242041 (DDBJ%2C Best hit);ORF_evidence=NP_001054249.1 (RefSeq);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J075119D13;TENOR=Os04t0675600-01;KEGG=Os04t0675600-01
Chr04	irgsp1_rep	five_prime_UTR	34499627	34499627	.	-	.	Parent=Os04t0675600-01
Chr04	irgsp1_rep	CDS	34498838	34499626	.	-	0	Parent=Os04t0675600-01
Chr04	irgsp1_rep	three_prime_UTR	34498550	34498837	.	-	.	Parent=Os04t0675600-01
Chr04	irgsp1_rep	mRNA	34501609	34502001	.	-	.	ID=Os04t0675700-00;Name=Os04t0675700-00;Locus_id=Os04g0675700;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=D0ABD8 (UniProt);InterPro=FBD (IPR013596);TENOR=Os04t0675700-00;KEGG=Os04t0675700-00
Chr04	irgsp1_rep	CDS	34501609	34502001	.	-	0	Parent=Os04t0675700-00
Chr04	irgsp1_rep	mRNA	34505859	34513140	.	-	.	ID=Os04t0675800-00;Name=Os04t0675800-00;Locus_id=Os04g0675800;Oryzabase Gene Symbol Synonym(s)=OsFbox238%2C Os_F0385;Oryzabase Gene Name Synonym(s)=F-box protein 238;Note=Similar to H0103C06.10 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q259H7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17024;TENOR=Os04t0675800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	34512883	34513140	.	-	0	Parent=Os04t0675800-00
Chr04	irgsp1_rep	CDS	34512512	34512625	.	-	0	Parent=Os04t0675800-00
Chr04	irgsp1_rep	CDS	34512259	34512396	.	-	0	Parent=Os04t0675800-00
Chr04	irgsp1_rep	CDS	34511667	34511771	.	-	0	Parent=Os04t0675800-00
Chr04	irgsp1_rep	CDS	34511467	34511589	.	-	0	Parent=Os04t0675800-00
Chr04	irgsp1_rep	CDS	34511018	34511386	.	-	0	Parent=Os04t0675800-00
Chr04	irgsp1_rep	CDS	34510648	34510773	.	-	0	Parent=Os04t0675800-00
Chr04	irgsp1_rep	CDS	34509635	34510375	.	-	0	Parent=Os04t0675800-00
Chr04	irgsp1_rep	CDS	34509348	34509541	.	-	0	Parent=Os04t0675800-00
Chr04	irgsp1_rep	CDS	34507419	34507518	.	-	1	Parent=Os04t0675800-00
Chr04	irgsp1_rep	CDS	34506362	34507276	.	-	0	Parent=Os04t0675800-00
Chr04	irgsp1_rep	CDS	34506112	34506270	.	-	0	Parent=Os04t0675800-00
Chr04	irgsp1_rep	CDS	34505859	34505876	.	-	0	Parent=Os04t0675800-00
Chr04	irgsp1_rep	mRNA	34508740	34509223	.	-	.	ID=Os04t0676000-00;Name=Os04t0676000-00;Locus_id=Os04g0676000;Note=Non-protein coding transcript.;Transcript_evidence=CT836511 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os04t0676000-00
Chr04	irgsp1_rep	exon	34508740	34509223	.	-	.	Parent=Os04t0676000-00
Chr04	irgsp1_rep	mRNA	34513602	34515261	.	+	.	ID=Os04t0676100-01;Name=Os04t0676100-01;Locus_id=Os04g0676100;Oryzabase Gene Symbol Synonym(s)=Trx x;Oryzabase Gene Name Synonym(s)=Thioredoxin x;Note=Similar to Thioredoxin X%2C chloroplast precursor.;Transcript_evidence=AK288094 (DDBJ%2C Best hit);ORF_evidence=Q259H6 (UniProt);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Thioredoxin (IPR005746),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766);NIAS_FLcDNA=J075188O21;Oryzabase=14056;TENOR=Os04t0676100-01;KEGG=Os04t0676100-01
Chr04	irgsp1_rep	five_prime_UTR	34513602	34513638	.	+	.	Parent=Os04t0676100-01
Chr04	irgsp1_rep	CDS	34513639	34513974	.	+	0	Parent=Os04t0676100-01
Chr04	irgsp1_rep	CDS	34514844	34515050	.	+	0	Parent=Os04t0676100-01
Chr04	irgsp1_rep	three_prime_UTR	34515051	34515261	.	+	.	Parent=Os04t0676100-01
Chr04	irgsp1_rep	mRNA	34515411	34517165	.	-	.	ID=Os04t0676200-01;Name=Os04t0676200-01;Locus_id=Os04g0676200;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK106412 (DDBJ%2C Best hit);ORF_evidence=Q7XKC9 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-103-A02;Expression=AK106412;TENOR=Os04t0676200-01;KEGG=Os04t0676200-01
Chr04	irgsp1_rep	CDS	34515960	34517165	.	-	0	Parent=Os04t0676200-01
Chr04	irgsp1_rep	three_prime_UTR	34515411	34515959	.	-	.	Parent=Os04t0676200-01
Chr04	irgsp1_rep	mRNA	34519564	34523544	.	+	.	ID=Os04t0676300-01;Name=Os04t0676300-01;Locus_id=Os04g0676300;Note=Similar to H0101F08.3 protein.;Transcript_evidence=AK287813 (DDBJ%2C Best hit);ORF_evidence=Q259H4 (UniProt);GO=Biological Process: 'de novo' pyrimidine base biosynthetic process (GO:0006207),Biological Process: UMP biosynthetic process (GO:0006222),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: dihydroorotate dehydrogenase activity (GO:0004152),Molecular Function: dihydroorotate oxidase activity (GO:0004158);InterPro=Dihydroorotate dehydrogenase%2C conserved site (IPR001295),Dihydroorotate dehydrogenase%2C class 2 (IPR005719),Dihydroorotate dehydrogenase%2C class 1/ 2 (IPR012135),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J065180F14;TENOR=Os04t0676300-01;KEGG=Os04t0676300-01 (EC:1.3.5.2)
Chr04	irgsp1_rep	five_prime_UTR	34519564	34519683	.	+	.	Parent=Os04t0676300-01
Chr04	irgsp1_rep	CDS	34519684	34519860	.	+	0	Parent=Os04t0676300-01
Chr04	irgsp1_rep	CDS	34520537	34520619	.	+	0	Parent=Os04t0676300-01
Chr04	irgsp1_rep	CDS	34520771	34521094	.	+	1	Parent=Os04t0676300-01
Chr04	irgsp1_rep	CDS	34521212	34521467	.	+	1	Parent=Os04t0676300-01
Chr04	irgsp1_rep	CDS	34521816	34521896	.	+	0	Parent=Os04t0676300-01
Chr04	irgsp1_rep	CDS	34521971	34522078	.	+	0	Parent=Os04t0676300-01
Chr04	irgsp1_rep	CDS	34522165	34522194	.	+	0	Parent=Os04t0676300-01
Chr04	irgsp1_rep	CDS	34522340	34522477	.	+	0	Parent=Os04t0676300-01
Chr04	irgsp1_rep	CDS	34522602	34522639	.	+	0	Parent=Os04t0676300-01
Chr04	irgsp1_rep	CDS	34522723	34522822	.	+	1	Parent=Os04t0676300-01
Chr04	irgsp1_rep	CDS	34523059	34523133	.	+	0	Parent=Os04t0676300-01
Chr04	irgsp1_rep	three_prime_UTR	34523134	34523544	.	+	.	Parent=Os04t0676300-01
Chr04	irgsp1_rep	mRNA	34533897	34536098	.	+	.	ID=Os04t0676400-01;Name=Os04t0676400-01;Locus_id=Os04g0676400;Note=Similar to H0101F08.4 protein.;Transcript_evidence=AK121530 (DDBJ%2C Best hit);ORF_evidence=Q259I9 (UniProt);InterPro=Protein of unknown function DUF761%2C plant (IPR008480);NIAS_FLcDNA=J033030N24;TENOR=Os04t0676400-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34533897	34533955	.	+	.	Parent=Os04t0676400-01
Chr04	irgsp1_rep	CDS	34533956	34534831	.	+	0	Parent=Os04t0676400-01
Chr04	irgsp1_rep	three_prime_UTR	34534832	34534960	.	+	.	Parent=Os04t0676400-01
Chr04	irgsp1_rep	three_prime_UTR	34535824	34536098	.	+	.	Parent=Os04t0676400-01
Chr04	irgsp1_rep	mRNA	34541271	34546805	.	-	.	ID=Os04t0676600-01;Name=Os04t0676600-01;Locus_id=Os04g0676600;CGSNL Gene Symbol=DLN127;CGSNL Gene Name=DLN REPRESSOR 127;Oryzabase Gene Symbol Synonym(s)=OsDLN127;Oryzabase Gene Name Synonym(s)=DLN repressor 127%2C DLN motif protein 127;Note=Similar to H0101F08.6 protein.;Transcript_evidence=AK072874 (DDBJ%2C Best hit);ORF_evidence=Q259I7 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=J023145I07;Oryzabase=23195;TENOR=Os04t0676600-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34546602	34546805	.	-	.	Parent=Os04t0676600-01
Chr04	irgsp1_rep	five_prime_UTR	34546390	34546481	.	-	.	Parent=Os04t0676600-01
Chr04	irgsp1_rep	five_prime_UTR	34545533	34545739	.	-	.	Parent=Os04t0676600-01
Chr04	irgsp1_rep	CDS	34545232	34545532	.	-	0	Parent=Os04t0676600-01
Chr04	irgsp1_rep	CDS	34544427	34544708	.	-	2	Parent=Os04t0676600-01
Chr04	irgsp1_rep	CDS	34543700	34543857	.	-	2	Parent=Os04t0676600-01
Chr04	irgsp1_rep	CDS	34543512	34543628	.	-	0	Parent=Os04t0676600-01
Chr04	irgsp1_rep	CDS	34542979	34543068	.	-	0	Parent=Os04t0676600-01
Chr04	irgsp1_rep	CDS	34542729	34542829	.	-	0	Parent=Os04t0676600-01
Chr04	irgsp1_rep	CDS	34541923	34541969	.	-	1	Parent=Os04t0676600-01
Chr04	irgsp1_rep	CDS	34541770	34541846	.	-	2	Parent=Os04t0676600-01
Chr04	irgsp1_rep	CDS	34541460	34541588	.	-	0	Parent=Os04t0676600-01
Chr04	irgsp1_rep	three_prime_UTR	34541271	34541459	.	-	.	Parent=Os04t0676600-01
Chr04	irgsp1_rep	mRNA	34548346	34553030	.	-	.	ID=Os04t0676650-00;Name=Os04t0676650-00;Locus_id=Os04g0676650;CGSNL Gene Symbol=LFL2;CGSNL Gene Name=LATE-FLOWERING 2;Oryzabase Gene Symbol Synonym(s)=OsLFL2%2C OsLFL3%2C LFL3;Oryzabase Gene Name Synonym(s)=B3 domain-containing protein LFL2%2C LEC2 and FUSCA3-like protein 2%2C LEAFY COTYLEDON 2 and FUSCA 3-LIKE 2;Note=Putative B3 domain-containing protein Os04g0676650.;Transcript_evidence=Q7XKC4 (UniProt);ORF_evidence=Q7XKC4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);Oryzabase=12135;TENOR=Os04t0676650-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	34552700	34553030	.	-	0	Parent=Os04t0676650-00
Chr04	irgsp1_rep	CDS	34551878	34552150	.	-	2	Parent=Os04t0676650-00
Chr04	irgsp1_rep	CDS	34550208	34550356	.	-	2	Parent=Os04t0676650-00
Chr04	irgsp1_rep	CDS	34550017	34550136	.	-	0	Parent=Os04t0676650-00
Chr04	irgsp1_rep	CDS	34549616	34549705	.	-	0	Parent=Os04t0676650-00
Chr04	irgsp1_rep	CDS	34549359	34549459	.	-	0	Parent=Os04t0676650-00
Chr04	irgsp1_rep	CDS	34548778	34548824	.	-	1	Parent=Os04t0676650-00
Chr04	irgsp1_rep	CDS	34548626	34548702	.	-	2	Parent=Os04t0676650-00
Chr04	irgsp1_rep	CDS	34548346	34548474	.	-	0	Parent=Os04t0676650-00
Chr04	irgsp1_rep	mRNA	34555302	34559555	.	-	.	ID=Os04t0676700-01;Name=Os04t0676700-01;Locus_id=Os04g0676700;RAP-DB Gene Symbol Synonym(s)=OsMYB6;RAP-DB Gene Name Synonym(s)=MYB transcription factor 6;Oryzabase Gene Symbol Synonym(s)=OsMYB6%2C MYB6;Oryzabase Gene Name Synonym(s)=MYB transcription factor 6;Note=MYB transcription factor%2C Drought and salt stress resistance;Transcript_evidence=MK061534,AK068623 (truncated);ORF_evidence=A0A482ESP0;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeobox-like domain superfamily (IPR009057),SANT/Myb domain (IPR001005),SANT domain (IPR017884),Myb domain (IPR017930),Myb domain%2C plants (IPR006447);NIAS_FLcDNA=J013153N23 (truncated);Manual Curation=October 15%2C 2019;Literature_PMID=30833955;Oryzabase=22976;TENOR=Os04t0676700-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=nucleus (GO:0005634)
Chr04	irgsp1_rep	CDS	34558714	34559555	.	-	0	Parent=Os04t0676700-01
Chr04	irgsp1_rep	CDS	34555563	34556064	.	-	1	Parent=Os04t0676700-01
Chr04	irgsp1_rep	three_prime_UTR	34555302	34555562	.	-	.	Parent=Os04t0676700-01
Chr04	irgsp1_rep	mRNA	34555255	34559368	.	-	.	ID=Os04t0676700-02;Name=Os04t0676700-02;Locus_id=Os04g0676700;Oryzabase Gene Symbol Synonym(s)=OsMYB6%2C MYB6;Oryzabase Gene Name Synonym(s)=MYB transcription factor 6;Note=Similar to H0101F08.8 protein.;Transcript_evidence=AK106166 (DDBJ%2C Best hit);ORF_evidence=Q259I5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),SANT%2C eukarya (IPR017884),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=001-208-B07;Oryzabase=22976;TENOR=Os04t0676700-02;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34559367	34559368	.	-	.	Parent=Os04t0676700-02
Chr04	irgsp1_rep	CDS	34558714	34559366	.	-	0	Parent=Os04t0676700-02
Chr04	irgsp1_rep	CDS	34555563	34556064	.	-	1	Parent=Os04t0676700-02
Chr04	irgsp1_rep	three_prime_UTR	34555255	34555562	.	-	.	Parent=Os04t0676700-02
Chr04	irgsp1_rep	mRNA	34564384	34566060	.	-	.	ID=Os04t0676800-01;Name=Os04t0676800-01;Locus_id=Os04g0676800;Note=Conserved hypothetical protein.;Transcript_evidence=AK242588 (DDBJ%2C Best hit);ORF_evidence=B9FDA5 (UniProt);NIAS_FLcDNA=J090011E22;TENOR=Os04t0676800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34566059	34566060	.	-	.	Parent=Os04t0676800-01
Chr04	irgsp1_rep	CDS	34565975	34566058	.	-	0	Parent=Os04t0676800-01
Chr04	irgsp1_rep	CDS	34565812	34565877	.	-	0	Parent=Os04t0676800-01
Chr04	irgsp1_rep	CDS	34565526	34565708	.	-	0	Parent=Os04t0676800-01
Chr04	irgsp1_rep	three_prime_UTR	34564384	34565525	.	-	.	Parent=Os04t0676800-01
Chr04	irgsp1_rep	mRNA	34573462	34575042	.	+	.	ID=Os04t0677000-01;Name=Os04t0677000-01;Locus_id=Os04g0677000;Note=Protein of unknown function DUF1677%2C Oryza sativa family protein.;Transcript_evidence=AK122185 (DDBJ%2C Best hit);ORF_evidence=Q259J6 (UniProt);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);NIAS_FLcDNA=J033150K05;Expression=AK122185;TENOR=Os04t0677000-01;KEGG=Os04t0677000-01
Chr04	irgsp1_rep	five_prime_UTR	34573462	34573504	.	+	.	Parent=Os04t0677000-01
Chr04	irgsp1_rep	five_prime_UTR	34573650	34573669	.	+	.	Parent=Os04t0677000-01
Chr04	irgsp1_rep	five_prime_UTR	34573798	34573899	.	+	.	Parent=Os04t0677000-01
Chr04	irgsp1_rep	CDS	34573900	34575006	.	+	0	Parent=Os04t0677000-01
Chr04	irgsp1_rep	three_prime_UTR	34575007	34575042	.	+	.	Parent=Os04t0677000-01
Chr04	irgsp1_rep	mRNA	34579437	34579972	.	-	.	ID=Os04t0677033-01;Name=Os04t0677033-01;Locus_id=Os04g0677033;Note=Similar to H0402C08.3 protein.;Transcript_evidence=AK243251 (DDBJ%2C Best hit);ORF_evidence=Q259J5 (UniProt);NIAS_FLcDNA=J100048A06;TENOR=Os04t0677033-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34579971	34579972	.	-	.	Parent=Os04t0677033-01
Chr04	irgsp1_rep	CDS	34579491	34579970	.	-	0	Parent=Os04t0677033-01
Chr04	irgsp1_rep	three_prime_UTR	34579437	34579490	.	-	.	Parent=Os04t0677033-01
Chr04	irgsp1_rep	mRNA	34581071	34585648	.	+	.	ID=Os04t0677066-01;Name=Os04t0677066-01;Locus_id=Os04g0677066;RAP-DB Gene Symbol Synonym(s)=OsPRMT6b;RAP-DB Gene Name Synonym(s)=protein arginine methyltransferase 6b;CGSNL Gene Symbol=PRMT6B;CGSNL Gene Name=PROTEIN ARGININE METHYLTRANSFERASE 6B;Oryzabase Gene Symbol Synonym(s)=OsPRMT6b;Oryzabase Gene Name Synonym(s)=protein arginine methyltransferase 6b;Note=Type I protein arginine methyltransferase;Transcript_evidence=Inferred from literature;ORF_evidence=Q7XKC0;GO=Biological Process: protein methylation (GO:0006479),Molecular Function: methyltransferase activity (GO:0008168);InterPro=S-adenosyl-L-methionine-dependent methyltransferase (IPR029063),Protein arginine N-methyltransferase (IPR025799);Manual Curation=September 2%2C 2020;Literature_PMID=21853042;Oryzabase=9677;TENOR=Os04t0677066-00;KEGG=Os04t0677066-00 (EC:2.1.1.-);Subcellular location=nucleus (GO:0005634) [mainly]
Chr04	irgsp1_rep	five_prime_UTR	34581071	34581207	.	+	.	Parent=Os04t0677066-01
Chr04	irgsp1_rep	CDS	34581208	34581396	.	+	0	Parent=Os04t0677066-01
Chr04	irgsp1_rep	CDS	34581542	34581607	.	+	0	Parent=Os04t0677066-01
Chr04	irgsp1_rep	CDS	34581707	34581775	.	+	0	Parent=Os04t0677066-01
Chr04	irgsp1_rep	CDS	34582273	34582308	.	+	0	Parent=Os04t0677066-01
Chr04	irgsp1_rep	CDS	34582742	34582807	.	+	0	Parent=Os04t0677066-01
Chr04	irgsp1_rep	CDS	34583081	34583149	.	+	0	Parent=Os04t0677066-01
Chr04	irgsp1_rep	CDS	34583259	34583336	.	+	0	Parent=Os04t0677066-01
Chr04	irgsp1_rep	CDS	34583539	34583617	.	+	0	Parent=Os04t0677066-01
Chr04	irgsp1_rep	CDS	34583731	34583825	.	+	2	Parent=Os04t0677066-01
Chr04	irgsp1_rep	CDS	34583921	34584005	.	+	0	Parent=Os04t0677066-01
Chr04	irgsp1_rep	CDS	34584255	34584436	.	+	2	Parent=Os04t0677066-01
Chr04	irgsp1_rep	CDS	34584546	34584664	.	+	0	Parent=Os04t0677066-01
Chr04	irgsp1_rep	CDS	34585139	34585181	.	+	1	Parent=Os04t0677066-01
Chr04	irgsp1_rep	three_prime_UTR	34585182	34585648	.	+	.	Parent=Os04t0677066-01
Chr04	irgsp1_rep	mRNA	34586733	34588232	.	-	.	ID=Os04t0677100-00;Name=Os04t0677100-00;Locus_id=Os04g0677100;Note=Similar to H0402C08.5 protein.;Transcript_evidence=AK366528 (DDBJ);ORF_evidence=Q259J3 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);TENOR=Os04t0677100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	34586733	34588232	.	-	0	Parent=Os04t0677100-00
Chr04	irgsp1_rep	mRNA	34595835	34597478	.	+	.	ID=Os04t0677200-01;Name=Os04t0677200-01;Locus_id=Os04g0677200;Note=Similar to H0402C08.6 protein.;Transcript_evidence=AK107505 (DDBJ%2C Best hit);ORF_evidence=Q259J2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591);NIAS_FLcDNA=002-129-E05;TENOR=Os04t0677200-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	34595835	34597148	.	+	0	Parent=Os04t0677200-01
Chr04	irgsp1_rep	three_prime_UTR	34597149	34597478	.	+	.	Parent=Os04t0677200-01
Chr04	irgsp1_rep	mRNA	34597648	34598755	.	-	.	ID=Os04t0677300-01;Name=Os04t0677300-01;Locus_id=Os04g0677300;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK108084 (DDBJ%2C Best hit);ORF_evidence=Q259J1 (UniProt);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=002-138-H05;Expression=AK108084;TENOR=Os04t0677300-01;KEGG=Os04t0677300-01
Chr04	irgsp1_rep	five_prime_UTR	34598691	34598755	.	-	.	Parent=Os04t0677300-01
Chr04	irgsp1_rep	CDS	34597923	34598690	.	-	0	Parent=Os04t0677300-01
Chr04	irgsp1_rep	three_prime_UTR	34597648	34597922	.	-	.	Parent=Os04t0677300-01
Chr04	irgsp1_rep	mRNA	34601247	34604930	.	-	.	ID=Os04t0677400-02;Name=Os04t0677400-02;Locus_id=Os04g0677400;Oryzabase Gene Symbol Synonym(s)=OsSTA136;Note=Protein of unknown function DUF639 family protein.;Transcript_evidence=AK069752 (DDBJ%2C Best hit),AK069563 (DDBJ%2C Best hit);ORF_evidence=Q259K5 (UniProt);NIAS_FLcDNA=J023030K02,J023022G06;Oryzabase=19425;Expression=AK069752;TENOR=Os04t0677400-02;KEGG=Os04t0677400-02
Chr04	irgsp1_rep	five_prime_UTR	34604831	34604930	.	-	.	Parent=Os04t0677400-02
Chr04	irgsp1_rep	CDS	34604691	34604830	.	-	0	Parent=Os04t0677400-02
Chr04	irgsp1_rep	CDS	34604280	34604505	.	-	1	Parent=Os04t0677400-02
Chr04	irgsp1_rep	CDS	34604087	34604173	.	-	0	Parent=Os04t0677400-02
Chr04	irgsp1_rep	CDS	34603838	34604007	.	-	0	Parent=Os04t0677400-02
Chr04	irgsp1_rep	CDS	34603540	34603682	.	-	1	Parent=Os04t0677400-02
Chr04	irgsp1_rep	CDS	34603267	34603447	.	-	2	Parent=Os04t0677400-02
Chr04	irgsp1_rep	CDS	34602579	34603182	.	-	1	Parent=Os04t0677400-02
Chr04	irgsp1_rep	CDS	34602215	34602327	.	-	0	Parent=Os04t0677400-02
Chr04	irgsp1_rep	CDS	34601848	34602091	.	-	1	Parent=Os04t0677400-02
Chr04	irgsp1_rep	CDS	34601479	34601724	.	-	0	Parent=Os04t0677400-02
Chr04	irgsp1_rep	three_prime_UTR	34601247	34601478	.	-	.	Parent=Os04t0677400-02
Chr04	irgsp1_rep	mRNA	34605457	34609072	.	-	.	ID=Os04t0677500-01;Name=Os04t0677500-01;Locus_id=Os04g0677500;RAP-DB Gene Symbol Synonym(s)=OsPK3;RAP-DB Gene Name Synonym(s)=pyruvate kinase 3;Oryzabase Gene Name Synonym(s)=pyruvate kinase;Note=Pyruvate kinase%2C Regulation of grain filling%2C Sucrose translocation;Transcript_evidence=AK100393;ORF_evidence=Q7XKB5;GO=Biological Process: glycolytic process (GO:0006096),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyruvate kinase activity (GO:0004743),Molecular Function: potassium ion binding (GO:0030955);InterPro=Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily (IPR015813),Pyruvate kinase-like domain superfamily (IPR040442),Pyruvate kinase-like%2C insert domain superfamily (IPR011037),Pyruvate kinase%2C insert domain superfamily (IPR015806),Pyruvate kinase%2C C-terminal domain superfamily (IPR036918),Pyruvate kinase (IPR001697),Pyruvate kinase%2C barrel (IPR015793),Pyruvate kinase%2C C-terminal (IPR015795),Pyruvate kinase%2C active site (IPR018209);NIAS_FLcDNA=J023086E07;Manual Curation=May 11%2C 2020;Literature_PMID=32376763;Oryzabase=14453;Expression=AK100393;TENOR=Os04t0677500-01;KEGG=Os04t0677500-01 (EC:2.7.1.40);B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.;Subcellular location=mitochondrion (GO:0005739)
Chr04	irgsp1_rep	five_prime_UTR	34608776	34609072	.	-	.	Parent=Os04t0677500-01
Chr04	irgsp1_rep	CDS	34608515	34608775	.	-	0	Parent=Os04t0677500-01
Chr04	irgsp1_rep	CDS	34607180	34607641	.	-	0	Parent=Os04t0677500-01
Chr04	irgsp1_rep	CDS	34605789	34606601	.	-	0	Parent=Os04t0677500-01
Chr04	irgsp1_rep	three_prime_UTR	34605457	34605788	.	-	.	Parent=Os04t0677500-01
Chr04	irgsp1_rep	mRNA	34605435	34608886	.	-	.	ID=Os04t0677500-02;Name=Os04t0677500-02;Locus_id=Os04g0677500;Oryzabase Gene Name Synonym(s)=pyruvate kinase;Note=Pyruvate kinase (EC 2.7.1.40).;Transcript_evidence=AK068805 (DDBJ%2C Best hit);ORF_evidence=Q259K4 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyruvate kinase activity (GO:0004743),Molecular Function: potassium ion binding (GO:0030955);InterPro=Pyruvate kinase (IPR001697),Pyruvate kinase-like%2C insert domain (IPR011037),Pyruvate kinase%2C barrel (IPR015793),Pyruvate kinase%2C alpha/beta (IPR015794),Pyruvate kinase%2C C-terminal (IPR015795),Pyruvate kinase%2C beta-barrel insert domain (IPR015806),Pyruvate/Phosphoenolpyruvate kinase (IPR015813),Pyruvate kinase%2C active site (IPR018209);NIAS_FLcDNA=J013157G24;Oryzabase=14453;Expression=AK068805;TENOR=Os04t0677500-02;KEGG=Os04t0677500-02 (EC:2.7.1.40);B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34608776	34608886	.	-	.	Parent=Os04t0677500-02
Chr04	irgsp1_rep	CDS	34608515	34608775	.	-	0	Parent=Os04t0677500-02
Chr04	irgsp1_rep	CDS	34607180	34607641	.	-	0	Parent=Os04t0677500-02
Chr04	irgsp1_rep	CDS	34605789	34606601	.	-	0	Parent=Os04t0677500-02
Chr04	irgsp1_rep	three_prime_UTR	34605435	34605788	.	-	.	Parent=Os04t0677500-02
Chr04	irgsp1_rep	mRNA	34610407	34611616	.	+	.	ID=Os04t0677550-01;Name=Os04t0677550-01;Locus_id=Os04g0677550;Note=Non-protein coding transcript.;Transcript_evidence=AK242553 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080319L22;TENOR=Os04t0677550-01
Chr04	irgsp1_rep	exon	34610407	34611616	.	+	.	Parent=Os04t0677550-01
Chr04	irgsp1_rep	mRNA	34612684	34613440	.	+	.	ID=Os04t0677600-00;Name=Os04t0677600-00;Locus_id=Os04g0677600;Note=Similar to H0402C08.10 protein.;Transcript_evidence=AK332595 (DDBJ);ORF_evidence=Q259K3 (UniProt);Oryzabase=23049;TENOR=Os04t0677600-00;KEGG=Os04t0677600-00
Chr04	irgsp1_rep	CDS	34612684	34613283	.	+	0	Parent=Os04t0677600-00
Chr04	irgsp1_rep	three_prime_UTR	34613284	34613440	.	+	.	Parent=Os04t0677600-00
Chr04	irgsp1_rep	mRNA	34613751	34614333	.	-	.	ID=Os04t0677650-01;Name=Os04t0677650-01;Locus_id=Os04g0677650;Oryzabase Gene Symbol Synonym(s)=OsWD40-111;Note=Hypothetical gene.;Transcript_evidence=AK242380 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J080043H03;Oryzabase=10792;TENOR=Os04t0677650-01;KEGG=Os04t0677650-01
Chr04	irgsp1_rep	CDS	34614103	34614333	.	-	0	Parent=Os04t0677650-01
Chr04	irgsp1_rep	three_prime_UTR	34613751	34614102	.	-	.	Parent=Os04t0677650-01
Chr04	irgsp1_rep	mRNA	34613664	34623117	.	-	.	ID=Os04t0677700-01;Name=Os04t0677700-01;Locus_id=Os04g0677700;RAP-DB Gene Symbol Synonym(s)=OsKTN80b;RAP-DB Gene Name Synonym(s)=katanin P80b;Oryzabase Gene Symbol Synonym(s)=OsKTN80b;Oryzabase Gene Name Synonym(s)=katanin P80b%2C Katanin regulatory subunit P80b;Note=Katanin P80 ortholog%2C Katanin regulatory subunit P80b;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Biological Process: microtubule severing (GO:0051013),Molecular Function: protein binding (GO:0005515),Molecular Function: microtubule binding (GO:0008017),Cellular Component: katanin complex (GO:0008352);InterPro=WD40-repeat-containing domain superfamily (IPR036322),WD40/YVTN repeat-like-containing domain superfamily (IPR015943),Katanin p80 subunit B1 (IPR026962),WD40-repeat-containing domain (IPR017986),Katanin p80 subunit%2C C-terminal (IPR028021),WD40 repeat (IPR001680),G-protein beta WD-40 repeat (IPR020472),WD40 repeat%2C conserved site (IPR019775);Manual Curation=January 18%2C 2018;Literature_PMID=24450597;Oryzabase=15629;TENOR=Os04t0677700-00;KEGG=Os04t0677700-00
Chr04	irgsp1_rep	five_prime_UTR	34622670	34623117	.	-	.	Parent=Os04t0677700-01
Chr04	irgsp1_rep	CDS	34622636	34622669	.	-	0	Parent=Os04t0677700-01
Chr04	irgsp1_rep	CDS	34622106	34622236	.	-	2	Parent=Os04t0677700-01
Chr04	irgsp1_rep	CDS	34621658	34621775	.	-	0	Parent=Os04t0677700-01
Chr04	irgsp1_rep	CDS	34621274	34621500	.	-	2	Parent=Os04t0677700-01
Chr04	irgsp1_rep	CDS	34620970	34621072	.	-	0	Parent=Os04t0677700-01
Chr04	irgsp1_rep	CDS	34620230	34620300	.	-	2	Parent=Os04t0677700-01
Chr04	irgsp1_rep	CDS	34619394	34619468	.	-	0	Parent=Os04t0677700-01
Chr04	irgsp1_rep	CDS	34619163	34619306	.	-	0	Parent=Os04t0677700-01
Chr04	irgsp1_rep	CDS	34618828	34619056	.	-	0	Parent=Os04t0677700-01
Chr04	irgsp1_rep	CDS	34617780	34618727	.	-	2	Parent=Os04t0677700-01
Chr04	irgsp1_rep	CDS	34617221	34617277	.	-	2	Parent=Os04t0677700-01
Chr04	irgsp1_rep	CDS	34617033	34617148	.	-	2	Parent=Os04t0677700-01
Chr04	irgsp1_rep	CDS	34616091	34616213	.	-	0	Parent=Os04t0677700-01
Chr04	irgsp1_rep	CDS	34615691	34615765	.	-	0	Parent=Os04t0677700-01
Chr04	irgsp1_rep	CDS	34615497	34615609	.	-	0	Parent=Os04t0677700-01
Chr04	irgsp1_rep	CDS	34615192	34615311	.	-	1	Parent=Os04t0677700-01
Chr04	irgsp1_rep	CDS	34614985	34615053	.	-	1	Parent=Os04t0677700-01
Chr04	irgsp1_rep	CDS	34614351	34614414	.	-	1	Parent=Os04t0677700-01
Chr04	irgsp1_rep	three_prime_UTR	34613664	34614350	.	-	.	Parent=Os04t0677700-01
Chr04	irgsp1_rep	mRNA	34628327	34631340	.	-	.	ID=Os04t0677800-01;Name=Os04t0677800-01;Locus_id=Os04g0677800;Note=Similar to H0402C08.12 protein.;Transcript_evidence=AK110947 (DDBJ%2C Best hit);ORF_evidence=Q259E7 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RanBP2-type (IPR001876);NIAS_FLcDNA=002-173-H07;Expression=AK110947;TENOR=Os04t0677800-01;KEGG=Os04t0677800-01
Chr04	irgsp1_rep	five_prime_UTR	34631159	34631340	.	-	.	Parent=Os04t0677800-01
Chr04	irgsp1_rep	five_prime_UTR	34630567	34630634	.	-	.	Parent=Os04t0677800-01
Chr04	irgsp1_rep	CDS	34630564	34630566	.	-	0	Parent=Os04t0677800-01
Chr04	irgsp1_rep	CDS	34630230	34630407	.	-	0	Parent=Os04t0677800-01
Chr04	irgsp1_rep	CDS	34629866	34630095	.	-	2	Parent=Os04t0677800-01
Chr04	irgsp1_rep	three_prime_UTR	34629263	34629865	.	-	.	Parent=Os04t0677800-01
Chr04	irgsp1_rep	three_prime_UTR	34628548	34628867	.	-	.	Parent=Os04t0677800-01
Chr04	irgsp1_rep	three_prime_UTR	34628327	34628428	.	-	.	Parent=Os04t0677800-01
Chr04	irgsp1_rep	mRNA	34626374	34631268	.	-	.	ID=Os04t0677800-02;Name=Os04t0677800-02;Locus_id=Os04g0677800;Note=Translation elongation factor EFTu/EF1A%2C C-terminal domain containing protein.;Transcript_evidence=AK102572 (DDBJ%2C Best hit);ORF_evidence=Q259E7 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525),Molecular Function: zinc ion binding (GO:0008270);InterPro=Protein synthesis factor%2C GTP-binding (IPR000795),Zinc finger%2C RanBP2-type (IPR001876),Translation elongation factor EFTu/EF1A%2C C-terminal (IPR004160),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Translation elongation factor EF1A/initiation factor IF2gamma%2C C-terminal (IPR009001);NIAS_FLcDNA=J033097M07;Expression=AK102572;TENOR=Os04t0677800-02;KEGG=Os04t0677800-02
Chr04	irgsp1_rep	five_prime_UTR	34631159	34631268	.	-	.	Parent=Os04t0677800-02
Chr04	irgsp1_rep	five_prime_UTR	34630567	34630634	.	-	.	Parent=Os04t0677800-02
Chr04	irgsp1_rep	CDS	34630564	34630566	.	-	0	Parent=Os04t0677800-02
Chr04	irgsp1_rep	CDS	34630230	34630407	.	-	0	Parent=Os04t0677800-02
Chr04	irgsp1_rep	CDS	34629901	34630095	.	-	2	Parent=Os04t0677800-02
Chr04	irgsp1_rep	CDS	34629263	34629340	.	-	2	Parent=Os04t0677800-02
Chr04	irgsp1_rep	CDS	34628548	34628867	.	-	2	Parent=Os04t0677800-02
Chr04	irgsp1_rep	CDS	34628318	34628428	.	-	0	Parent=Os04t0677800-02
Chr04	irgsp1_rep	CDS	34627739	34628229	.	-	0	Parent=Os04t0677800-02
Chr04	irgsp1_rep	CDS	34627481	34627649	.	-	1	Parent=Os04t0677800-02
Chr04	irgsp1_rep	CDS	34626996	34627235	.	-	0	Parent=Os04t0677800-02
Chr04	irgsp1_rep	CDS	34626749	34626883	.	-	0	Parent=Os04t0677800-02
Chr04	irgsp1_rep	CDS	34626537	34626665	.	-	0	Parent=Os04t0677800-02
Chr04	irgsp1_rep	three_prime_UTR	34626374	34626536	.	-	.	Parent=Os04t0677800-02
Chr04	irgsp1_rep	mRNA	34639558	34640487	.	-	.	ID=Os04t0678000-01;Name=Os04t0678000-01;Locus_id=Os04g0678000;Note=Hypothetical protein.;Transcript_evidence=AK060170 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=006-311-E11;Expression=AK060170;TENOR=Os04t0678000-01;KEGG=Os04t0678000-01
Chr04	irgsp1_rep	five_prime_UTR	34640344	34640487	.	-	.	Parent=Os04t0678000-01
Chr04	irgsp1_rep	CDS	34639828	34640343	.	-	0	Parent=Os04t0678000-01
Chr04	irgsp1_rep	three_prime_UTR	34639558	34639827	.	-	.	Parent=Os04t0678000-01
Chr04	irgsp1_rep	mRNA	34642807	34644512	.	+	.	ID=Os04t0678200-01;Name=Os04t0678200-01;Locus_id=Os04g0678200;Note=Protein of unknown function DUF1218 family protein.;Transcript_evidence=AK106193 (DDBJ%2C Best hit);ORF_evidence=Q259E5 (UniProt);InterPro=Protein of unknown function DUF1218 (IPR009606);NIAS_FLcDNA=001-208-E04;Expression=AK106193;TENOR=Os04t0678200-01;KEGG=Os04t0678200-01
Chr04	irgsp1_rep	five_prime_UTR	34642807	34643000	.	+	.	Parent=Os04t0678200-01
Chr04	irgsp1_rep	CDS	34643001	34643090	.	+	0	Parent=Os04t0678200-01
Chr04	irgsp1_rep	CDS	34643176	34643378	.	+	0	Parent=Os04t0678200-01
Chr04	irgsp1_rep	CDS	34643966	34644224	.	+	1	Parent=Os04t0678200-01
Chr04	irgsp1_rep	three_prime_UTR	34644225	34644512	.	+	.	Parent=Os04t0678200-01
Chr04	irgsp1_rep	mRNA	34643962	34644212	.	-	.	ID=Os04t0678250-00;Name=Os04t0678250-00;Locus_id=Os04g0678250;Note=Hypothetical protein.;Transcript_evidence=BT086987 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0678250-00
Chr04	irgsp1_rep	CDS	34643962	34644212	.	-	0	Parent=Os04t0678250-00
Chr04	irgsp1_rep	mRNA	34649606	34655208	.	+	.	ID=Os04t0678300-01;Name=Os04t0678300-01;Locus_id=Os04g0678300;Oryzabase Gene Symbol Synonym(s)=OsWD40-112;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK102779 (DDBJ%2C Best hit);ORF_evidence=Q259C8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J033107J24;Oryzabase=10793;Expression=AK102779;TENOR=Os04t0678300-01;KEGG=Os04t0678300-01
Chr04	irgsp1_rep	five_prime_UTR	34649606	34649809	.	+	.	Parent=Os04t0678300-01
Chr04	irgsp1_rep	CDS	34649810	34651207	.	+	0	Parent=Os04t0678300-01
Chr04	irgsp1_rep	CDS	34652952	34653042	.	+	0	Parent=Os04t0678300-01
Chr04	irgsp1_rep	CDS	34653157	34653314	.	+	2	Parent=Os04t0678300-01
Chr04	irgsp1_rep	CDS	34653397	34653448	.	+	0	Parent=Os04t0678300-01
Chr04	irgsp1_rep	CDS	34653614	34653696	.	+	2	Parent=Os04t0678300-01
Chr04	irgsp1_rep	CDS	34653809	34653902	.	+	0	Parent=Os04t0678300-01
Chr04	irgsp1_rep	CDS	34654335	34654918	.	+	2	Parent=Os04t0678300-01
Chr04	irgsp1_rep	three_prime_UTR	34654919	34655208	.	+	.	Parent=Os04t0678300-01
Chr04	irgsp1_rep	mRNA	34655316	34656735	.	-	.	ID=Os04t0678400-01;Name=Os04t0678400-01;Locus_id=Os04g0678400;CGSNL Gene Symbol=DOF17;CGSNL Gene Name=DNA BINDING WITH ONE FINGER 17;Oryzabase Gene Symbol Synonym(s)=OsDof17%2C Dof17%2C OsDof-17;Oryzabase Gene Name Synonym(s)=Dof zinc factor 17%2C Dof transcription factor 17;Note=Zinc finger%2C Dof-type domain containing protein.;Transcript_evidence=AK107524 (DDBJ%2C Best hit);ORF_evidence=Q259D3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C Dof-type (IPR003851);NIAS_FLcDNA=002-129-F12;Oryzabase=8807;Expression=AK107524;TENOR=Os04t0678400-01;KEGG=Os04t0678400-01
Chr04	irgsp1_rep	five_prime_UTR	34656599	34656735	.	-	.	Parent=Os04t0678400-01
Chr04	irgsp1_rep	CDS	34656494	34656598	.	-	0	Parent=Os04t0678400-01
Chr04	irgsp1_rep	CDS	34655654	34656169	.	-	0	Parent=Os04t0678400-01
Chr04	irgsp1_rep	three_prime_UTR	34655316	34655653	.	-	.	Parent=Os04t0678400-01
Chr04	irgsp1_rep	mRNA	34663055	34664559	.	+	.	ID=Os04t0678700-01;Name=Os04t0678700-01;Locus_id=Os04g0678700;RAP-DB Gene Symbol Synonym(s)=OsPORA;RAP-DB Gene Name Synonym(s)=Protochlorophyllide oxidoreductase A%2C NADPH: protochlorophyllide oxidoreductase A;CGSNL Gene Symbol=PORA;Oryzabase Gene Symbol Synonym(s)=OsPorA%2C OsPORA;Oryzabase Gene Name Synonym(s)=NADPH: protochlorophyllide oxidoreductase A%2C Protochlorophyllide oxidoreductase A;Note=NADPH:protochlorophyllide oxidoreductase%2C Chlorophyll biosynthesis;Transcript_evidence=AK103943,AK065236,AK103940,AK104855;ORF_evidence=Q7XKF3;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: protochlorophyllide reductase activity (GO:0016630);InterPro=NAD(P)-binding domain superfamily (IPR036291),Short-chain dehydrogenase/reductase SDR (IPR002347),Light-dependent protochlorophyllide reductase (IPR005979);NIAS_FLcDNA=001-013-G12,J013002H23,001-013-G08,001-043-B11;Manual Curation=July 12%2C 2019;Literature_PMID=31290959,28078486,23289852;Oryzabase=9404;Expression=AK103943;TENOR=Os04t0678700-01;KEGG=Os04t0678700-01 (EC:1.3.1.33)
Chr04	irgsp1_rep	five_prime_UTR	34663055	34663126	.	+	.	Parent=Os04t0678700-01
Chr04	irgsp1_rep	CDS	34663127	34663183	.	+	0	Parent=Os04t0678700-01
Chr04	irgsp1_rep	CDS	34663305	34664411	.	+	0	Parent=Os04t0678700-01
Chr04	irgsp1_rep	three_prime_UTR	34664412	34664559	.	+	.	Parent=Os04t0678700-01
Chr04	irgsp1_rep	mRNA	34664936	34668618	.	+	.	ID=Os04t0678800-01;Name=Os04t0678800-01;Locus_id=Os04g0678800;Note=N-acetylglucosaminyl phosphatidylinositol deacetylase domain containing protein.;Transcript_evidence=AK072212 (DDBJ%2C Best hit);ORF_evidence=E7DDW7 (UniProt);InterPro=N-acetylglucosaminyl phosphatidylinositol deacetylase (IPR003737),Putative deacetylase LmbE-like domain (IPR024078);NIAS_FLcDNA=J013161A01;Expression=AK072212;TENOR=Os04t0678800-01;KEGG=Os04t0678800-01 (EC:3.5.1.89)
Chr04	irgsp1_rep	five_prime_UTR	34664936	34665116	.	+	.	Parent=Os04t0678800-01
Chr04	irgsp1_rep	CDS	34665117	34665304	.	+	0	Parent=Os04t0678800-01
Chr04	irgsp1_rep	CDS	34665666	34665736	.	+	1	Parent=Os04t0678800-01
Chr04	irgsp1_rep	CDS	34665896	34665960	.	+	2	Parent=Os04t0678800-01
Chr04	irgsp1_rep	CDS	34666060	34666104	.	+	0	Parent=Os04t0678800-01
Chr04	irgsp1_rep	CDS	34666195	34666275	.	+	0	Parent=Os04t0678800-01
Chr04	irgsp1_rep	CDS	34666662	34666729	.	+	0	Parent=Os04t0678800-01
Chr04	irgsp1_rep	CDS	34667267	34667315	.	+	1	Parent=Os04t0678800-01
Chr04	irgsp1_rep	CDS	34667655	34667812	.	+	0	Parent=Os04t0678800-01
Chr04	irgsp1_rep	CDS	34668177	34668240	.	+	1	Parent=Os04t0678800-01
Chr04	irgsp1_rep	three_prime_UTR	34668241	34668618	.	+	.	Parent=Os04t0678800-01
Chr04	irgsp1_rep	mRNA	34664975	34668633	.	+	.	ID=Os04t0678800-02;Name=Os04t0678800-02;Locus_id=Os04g0678800;Note=N-acetylglucosaminyl phosphatidylinositol deacetylase domain containing protein.;Transcript_evidence=AK099065 (DDBJ%2C Best hit);ORF_evidence=E7DDW7 (UniProt);InterPro=N-acetylglucosaminyl phosphatidylinositol deacetylase (IPR003737),Putative deacetylase LmbE-like domain (IPR024078);NIAS_FLcDNA=J013164P16;Expression=AK099065;TENOR=Os04t0678800-02;KEGG=Os04t0678800-02 (EC:3.5.1.89)
Chr04	irgsp1_rep	five_prime_UTR	34664975	34665116	.	+	.	Parent=Os04t0678800-02
Chr04	irgsp1_rep	CDS	34665117	34665304	.	+	0	Parent=Os04t0678800-02
Chr04	irgsp1_rep	CDS	34665666	34665736	.	+	1	Parent=Os04t0678800-02
Chr04	irgsp1_rep	CDS	34665896	34665960	.	+	2	Parent=Os04t0678800-02
Chr04	irgsp1_rep	CDS	34666060	34666104	.	+	0	Parent=Os04t0678800-02
Chr04	irgsp1_rep	CDS	34666195	34666275	.	+	0	Parent=Os04t0678800-02
Chr04	irgsp1_rep	CDS	34666662	34666729	.	+	0	Parent=Os04t0678800-02
Chr04	irgsp1_rep	CDS	34667267	34667315	.	+	1	Parent=Os04t0678800-02
Chr04	irgsp1_rep	CDS	34667655	34667812	.	+	0	Parent=Os04t0678800-02
Chr04	irgsp1_rep	CDS	34668177	34668240	.	+	1	Parent=Os04t0678800-02
Chr04	irgsp1_rep	three_prime_UTR	34668241	34668633	.	+	.	Parent=Os04t0678800-02
Chr04	irgsp1_rep	mRNA	34669394	34671829	.	+	.	ID=Os04t0679000-00;Name=Os04t0679000-00;Locus_id=Os04g0679000;Note=Similar to H0801D08.9 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q259D0 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);TENOR=Os04t0679000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	34669394	34669625	.	+	0	Parent=Os04t0679000-00
Chr04	irgsp1_rep	CDS	34670260	34671170	.	+	2	Parent=Os04t0679000-00
Chr04	irgsp1_rep	CDS	34671818	34671829	.	+	0	Parent=Os04t0679000-00
Chr04	irgsp1_rep	mRNA	34672842	34676866	.	+	.	ID=Os04t0679050-00;Name=Os04t0679050-00;Locus_id=Os04g0679050;Note=Similar to H0801D08.10 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q259C9 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);TENOR=Os04t0679050-00
Chr04	irgsp1_rep	CDS	34672842	34673076	.	+	0	Parent=Os04t0679050-00
Chr04	irgsp1_rep	CDS	34673465	34674522	.	+	2	Parent=Os04t0679050-00
Chr04	irgsp1_rep	CDS	34676774	34676866	.	+	0	Parent=Os04t0679050-00
Chr04	irgsp1_rep	mRNA	34677521	34681308	.	+	.	ID=Os04t0679100-01;Name=Os04t0679100-01;Locus_id=Os04g0679100;Note=Clathrin light chain family protein.;Transcript_evidence=AK103034 (DDBJ%2C Best hit);ORF_evidence=Q259D4 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: clathrin coat of trans-Golgi network vesicle (GO:0030130),Cellular Component: clathrin coat of coated pit (GO:0030132),Molecular Function: structural molecule activity (GO:0005198);InterPro=Clathrin light chain (IPR000996);NIAS_FLcDNA=J033117D08;Expression=AK103034;TENOR=Os04t0679100-01;KEGG=Os04t0679100-01
Chr04	irgsp1_rep	five_prime_UTR	34677521	34677614	.	+	.	Parent=Os04t0679100-01
Chr04	irgsp1_rep	CDS	34677615	34677964	.	+	0	Parent=Os04t0679100-01
Chr04	irgsp1_rep	CDS	34680319	34680472	.	+	1	Parent=Os04t0679100-01
Chr04	irgsp1_rep	CDS	34680569	34680970	.	+	0	Parent=Os04t0679100-01
Chr04	irgsp1_rep	three_prime_UTR	34680971	34681308	.	+	.	Parent=Os04t0679100-01
Chr04	irgsp1_rep	mRNA	34680356	34680852	.	-	.	ID=Os04t0679150-00;Name=Os04t0679150-00;Locus_id=Os04g0679150;Note=Non-protein coding transcript.;Transcript_evidence=BT016392 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0679150-00
Chr04	irgsp1_rep	exon	34680567	34680852	.	-	.	Parent=Os04t0679150-00
Chr04	irgsp1_rep	exon	34680356	34680470	.	-	.	Parent=Os04t0679150-00
Chr04	irgsp1_rep	mRNA	34681377	34685068	.	-	.	ID=Os04t0679200-01;Name=Os04t0679200-01;Locus_id=Os04g0679200;CGSNL Gene Symbol=RLCK172;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 172;Oryzabase Gene Symbol Synonym(s)=OsRLCK172;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 172;Note=Similar to H0801D08.12 protein.;Transcript_evidence=AK100266 (DDBJ%2C Best hit),AK071300 (DDBJ%2C Best hit);ORF_evidence=Q259E0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023064P16,J023088H16;Oryzabase=18875;TENOR=Os04t0679200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34684808	34685068	.	-	.	Parent=Os04t0679200-01
Chr04	irgsp1_rep	five_prime_UTR	34683695	34683699	.	-	.	Parent=Os04t0679200-01
Chr04	irgsp1_rep	CDS	34683565	34683694	.	-	0	Parent=Os04t0679200-01
Chr04	irgsp1_rep	CDS	34683265	34683380	.	-	2	Parent=Os04t0679200-01
Chr04	irgsp1_rep	CDS	34682942	34683152	.	-	0	Parent=Os04t0679200-01
Chr04	irgsp1_rep	CDS	34682614	34682851	.	-	2	Parent=Os04t0679200-01
Chr04	irgsp1_rep	CDS	34682379	34682526	.	-	1	Parent=Os04t0679200-01
Chr04	irgsp1_rep	CDS	34681620	34681964	.	-	0	Parent=Os04t0679200-01
Chr04	irgsp1_rep	three_prime_UTR	34681377	34681619	.	-	.	Parent=Os04t0679200-01
Chr04	irgsp1_rep	mRNA	34681372	34685033	.	-	.	ID=Os04t0679200-02;Name=Os04t0679200-02;Locus_id=Os04g0679200;CGSNL Gene Symbol=RLCK172;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 172;Oryzabase Gene Symbol Synonym(s)=OsRLCK172;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 172;Note=Similar to H0801D08.12 protein.;Transcript_evidence=AK104911 (DDBJ%2C Best hit);ORF_evidence=Q259E0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-047-B03;Oryzabase=18875;TENOR=Os04t0679200-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34684808	34685033	.	-	.	Parent=Os04t0679200-02
Chr04	irgsp1_rep	five_prime_UTR	34683695	34683699	.	-	.	Parent=Os04t0679200-02
Chr04	irgsp1_rep	CDS	34683565	34683694	.	-	0	Parent=Os04t0679200-02
Chr04	irgsp1_rep	CDS	34683265	34683380	.	-	2	Parent=Os04t0679200-02
Chr04	irgsp1_rep	CDS	34682942	34683152	.	-	0	Parent=Os04t0679200-02
Chr04	irgsp1_rep	CDS	34682614	34682851	.	-	2	Parent=Os04t0679200-02
Chr04	irgsp1_rep	CDS	34682379	34682526	.	-	1	Parent=Os04t0679200-02
Chr04	irgsp1_rep	CDS	34681620	34681964	.	-	0	Parent=Os04t0679200-02
Chr04	irgsp1_rep	three_prime_UTR	34681372	34681619	.	-	.	Parent=Os04t0679200-02
Chr04	irgsp1_rep	mRNA	34694372	34696099	.	-	.	ID=Os04t0679400-01;Name=Os04t0679400-01;Locus_id=Os04g0679400;Note=Similar to H0801D08.15 protein.;Transcript_evidence=AK121152 (DDBJ%2C Best hit);ORF_evidence=Q259D7 (UniProt);InterPro=Domain of unknown function DUF3700 (IPR024286),Domain of unknown function DUF3711 (IPR024287);NIAS_FLcDNA=J023078J16;TENOR=Os04t0679400-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34695808	34696099	.	-	.	Parent=Os04t0679400-01
Chr04	irgsp1_rep	CDS	34695596	34695807	.	-	0	Parent=Os04t0679400-01
Chr04	irgsp1_rep	CDS	34695252	34695495	.	-	1	Parent=Os04t0679400-01
Chr04	irgsp1_rep	CDS	34694720	34695040	.	-	0	Parent=Os04t0679400-01
Chr04	irgsp1_rep	three_prime_UTR	34694372	34694719	.	-	.	Parent=Os04t0679400-01
Chr04	irgsp1_rep	mRNA	34694367	34695965	.	-	.	ID=Os04t0679400-02;Name=Os04t0679400-02;Locus_id=Os04g0679400;Note=Similar to H0801D08.15 protein.;Transcript_evidence=AK068608 (DDBJ%2C Best hit);ORF_evidence=Q259D7 (UniProt);InterPro=Domain of unknown function DUF3700 (IPR024286);NIAS_FLcDNA=J013157B10;TENOR=Os04t0679400-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34695808	34695965	.	-	.	Parent=Os04t0679400-02
Chr04	irgsp1_rep	CDS	34695596	34695807	.	-	0	Parent=Os04t0679400-02
Chr04	irgsp1_rep	CDS	34695243	34695495	.	-	1	Parent=Os04t0679400-02
Chr04	irgsp1_rep	three_prime_UTR	34694367	34695242	.	-	.	Parent=Os04t0679400-02
Chr04	irgsp1_rep	mRNA	34694376	34695023	.	-	.	ID=Os04t0679400-03;Name=Os04t0679400-03;Locus_id=Os04g0679400;Note=Similar to H0801D08.15 protein.;Transcript_evidence=AK120508 (DDBJ%2C Best hit);ORF_evidence=Q259D7 (UniProt);InterPro=Domain of unknown function DUF3711 (IPR024287);NIAS_FLcDNA=J013123H02;Expression=AK120508;TENOR=Os04t0679400-03;KEGG=Os04t0679400-03
Chr04	irgsp1_rep	five_prime_UTR	34695023	34695023	.	-	.	Parent=Os04t0679400-03
Chr04	irgsp1_rep	CDS	34694720	34695022	.	-	0	Parent=Os04t0679400-03
Chr04	irgsp1_rep	three_prime_UTR	34694376	34694719	.	-	.	Parent=Os04t0679400-03
Chr04	irgsp1_rep	mRNA	34694372	34695965	.	-	.	ID=Os04t0679400-04;Name=Os04t0679400-04;Locus_id=Os04g0679400;Note=Similar to H0801D08.15 protein.;Transcript_evidence=AK099368 (DDBJ%2C Best hit),AK065314 (DDBJ%2C Best hit),AK099009 (DDBJ%2C Best hit),AK099087 (DDBJ%2C Best hit),AK099653 (DDBJ%2C Best hit),AK099975 (DDBJ%2C Best hit),AK104249 (DDBJ%2C Best hit),AK104376 (DDBJ%2C Best hit),AK106133 (DDBJ%2C Best hit),AK119666 (DDBJ%2C Best hit);ORF_evidence=Q259D7 (UniProt);NIAS_FLcDNA=J033052O07,J013002O24,J013116G09,J023006D09,J013065M12,J013128E09,006-308-G04,001-035-G05,001-207-G01,002-144-D04;TENOR=Os04t0679400-04
Chr04	irgsp1_rep	five_prime_UTR	34695808	34695965	.	-	.	Parent=Os04t0679400-04
Chr04	irgsp1_rep	CDS	34695596	34695807	.	-	0	Parent=Os04t0679400-04
Chr04	irgsp1_rep	CDS	34695252	34695495	.	-	1	Parent=Os04t0679400-04
Chr04	irgsp1_rep	CDS	34694720	34695040	.	-	0	Parent=Os04t0679400-04
Chr04	irgsp1_rep	three_prime_UTR	34694372	34694719	.	-	.	Parent=Os04t0679400-04
Chr04	irgsp1_rep	mRNA	34694802	34695807	.	+	.	ID=Os04t0679500-00;Name=Os04t0679500-00;Locus_id=Os04g0679500;Note=Hypothetical protein.;Transcript_evidence=BT016691 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0679500-00
Chr04	irgsp1_rep	five_prime_UTR	34694802	34694825	.	+	.	Parent=Os04t0679500-00
Chr04	irgsp1_rep	CDS	34694826	34695035	.	+	0	Parent=Os04t0679500-00
Chr04	irgsp1_rep	CDS	34695255	34695497	.	+	0	Parent=Os04t0679500-00
Chr04	irgsp1_rep	CDS	34695609	34695710	.	+	0	Parent=Os04t0679500-00
Chr04	irgsp1_rep	three_prime_UTR	34695711	34695807	.	+	.	Parent=Os04t0679500-00
Chr04	irgsp1_rep	mRNA	34706575	34707975	.	-	.	ID=Os04t0679600-01;Name=Os04t0679600-01;Locus_id=Os04g0679600;Oryzabase Gene Symbol Synonym(s)=OsCBSX12;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSX12%2C CBS domain containing protein OsCBSX12;Note=Similar to H0801D08.17 protein.;Transcript_evidence=AK109942 (DDBJ%2C Best hit);ORF_evidence=Q259D5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Cystathionine beta-synthase%2C core (IPR000644);NIAS_FLcDNA=002-154-F01;Oryzabase=10329;TENOR=Os04t0679600-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34707974	34707975	.	-	.	Parent=Os04t0679600-01
Chr04	irgsp1_rep	CDS	34707629	34707973	.	-	0	Parent=Os04t0679600-01
Chr04	irgsp1_rep	CDS	34706681	34707550	.	-	0	Parent=Os04t0679600-01
Chr04	irgsp1_rep	three_prime_UTR	34706575	34706680	.	-	.	Parent=Os04t0679600-01
Chr04	irgsp1_rep	mRNA	34714754	34717224	.	+	.	ID=Os04t0679800-01;Name=Os04t0679800-01;Locus_id=Os04g0679800;Note=Similar to RNA-binding protein-like protein.;Transcript_evidence=AK060662 (DDBJ%2C Best hit);ORF_evidence=A2Q4Q8 (UniProt);NIAS_FLcDNA=001-028-B04;Expression=AK060662;TENOR=Os04t0679800-01;KEGG=Os04t0679800-01
Chr04	irgsp1_rep	five_prime_UTR	34714754	34714979	.	+	.	Parent=Os04t0679800-01
Chr04	irgsp1_rep	CDS	34714980	34715059	.	+	0	Parent=Os04t0679800-01
Chr04	irgsp1_rep	CDS	34715338	34715488	.	+	1	Parent=Os04t0679800-01
Chr04	irgsp1_rep	CDS	34715596	34715662	.	+	0	Parent=Os04t0679800-01
Chr04	irgsp1_rep	CDS	34715771	34715946	.	+	2	Parent=Os04t0679800-01
Chr04	irgsp1_rep	three_prime_UTR	34715947	34716007	.	+	.	Parent=Os04t0679800-01
Chr04	irgsp1_rep	three_prime_UTR	34716768	34717224	.	+	.	Parent=Os04t0679800-01
Chr04	irgsp1_rep	mRNA	34714767	34717224	.	+	.	ID=Os04t0679800-02;Name=Os04t0679800-02;Locus_id=Os04g0679800;Note=Similar to Zinc finger%2C RING-type.;Transcript_evidence=AK099987 (DDBJ%2C Best hit);ORF_evidence=A2Q4Q8 (UniProt);NIAS_FLcDNA=J013130B11;Expression=AK099987;TENOR=Os04t0679800-02;KEGG=Os04t0679800-02
Chr04	irgsp1_rep	five_prime_UTR	34714767	34715299	.	+	.	Parent=Os04t0679800-02
Chr04	irgsp1_rep	CDS	34715300	34715557	.	+	0	Parent=Os04t0679800-02
Chr04	irgsp1_rep	three_prime_UTR	34715558	34715662	.	+	.	Parent=Os04t0679800-02
Chr04	irgsp1_rep	three_prime_UTR	34715771	34716007	.	+	.	Parent=Os04t0679800-02
Chr04	irgsp1_rep	three_prime_UTR	34716768	34717224	.	+	.	Parent=Os04t0679800-02
Chr04	irgsp1_rep	mRNA	34717887	34721250	.	-	.	ID=Os04t0679900-01;Name=Os04t0679900-01;Locus_id=Os04g0679900;Note=Tetraspanin domain containing protein.;Transcript_evidence=AK069950 (DDBJ%2C Best hit),AK104163 (DDBJ%2C Best hit);ORF_evidence=B8ARH1 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Tetraspanin (IPR018499);NIAS_FLcDNA=J023034M14,006-212-B10;TENOR=Os04t0679900-01
Chr04	irgsp1_rep	five_prime_UTR	34721012	34721250	.	-	.	Parent=Os04t0679900-01
Chr04	irgsp1_rep	CDS	34720851	34721011	.	-	0	Parent=Os04t0679900-01
Chr04	irgsp1_rep	CDS	34719466	34719565	.	-	1	Parent=Os04t0679900-01
Chr04	irgsp1_rep	CDS	34719041	34719121	.	-	0	Parent=Os04t0679900-01
Chr04	irgsp1_rep	CDS	34718733	34718837	.	-	0	Parent=Os04t0679900-01
Chr04	irgsp1_rep	CDS	34718299	34718493	.	-	0	Parent=Os04t0679900-01
Chr04	irgsp1_rep	CDS	34718186	34718197	.	-	0	Parent=Os04t0679900-01
Chr04	irgsp1_rep	three_prime_UTR	34717887	34718185	.	-	.	Parent=Os04t0679900-01
Chr04	irgsp1_rep	mRNA	34721215	34721623	.	+	.	ID=Os04t0679933-00;Name=Os04t0679933-00;Locus_id=Os04g0679933;Note=Non-protein coding transcript.;Transcript_evidence=CT836519 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os04t0679933-00
Chr04	irgsp1_rep	exon	34721215	34721423	.	+	.	Parent=Os04t0679933-00
Chr04	irgsp1_rep	exon	34721437	34721623	.	+	.	Parent=Os04t0679933-00
Chr04	irgsp1_rep	mRNA	34724030	34724991	.	+	.	ID=Os04t0679967-01;Name=Os04t0679967-01;Locus_id=Os04g0679967;Note=Hypothetical gene.;Transcript_evidence=AK108132 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-139-D11;TENOR=Os04t0679967-01
Chr04	irgsp1_rep	five_prime_UTR	34724030	34724483	.	+	.	Parent=Os04t0679967-01
Chr04	irgsp1_rep	CDS	34724484	34724807	.	+	0	Parent=Os04t0679967-01
Chr04	irgsp1_rep	three_prime_UTR	34724808	34724991	.	+	.	Parent=Os04t0679967-01
Chr04	irgsp1_rep	mRNA	34725156	34730395	.	+	.	ID=Os04t0680000-00;Name=Os04t0680000-00;Locus_id=Os04g0680000;Oryzabase Gene Name Synonym(s)=TFIIH p52 subunit;Note=Similar to predicted protein.;Transcript_evidence=AK330398 (DDBJ);ORF_evidence=NP_974564.1 (RefSeq);GO=Biological Process: DNA repair (GO:0006281),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634);InterPro=Transcription factor Tfb2 (IPR004598);Oryzabase=21067;TENOR=Os04t0680000-00;KEGG=Os04t0680000-00;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34725156	34725440	.	+	.	Parent=Os04t0680000-00
Chr04	irgsp1_rep	CDS	34725441	34725553	.	+	0	Parent=Os04t0680000-00
Chr04	irgsp1_rep	CDS	34725646	34725813	.	+	1	Parent=Os04t0680000-00
Chr04	irgsp1_rep	CDS	34726431	34726499	.	+	1	Parent=Os04t0680000-00
Chr04	irgsp1_rep	CDS	34726989	34727082	.	+	1	Parent=Os04t0680000-00
Chr04	irgsp1_rep	CDS	34727234	34727334	.	+	0	Parent=Os04t0680000-00
Chr04	irgsp1_rep	CDS	34727825	34727870	.	+	1	Parent=Os04t0680000-00
Chr04	irgsp1_rep	CDS	34727956	34728015	.	+	0	Parent=Os04t0680000-00
Chr04	irgsp1_rep	CDS	34728113	34728181	.	+	0	Parent=Os04t0680000-00
Chr04	irgsp1_rep	CDS	34728654	34728737	.	+	0	Parent=Os04t0680000-00
Chr04	irgsp1_rep	CDS	34728809	34728892	.	+	0	Parent=Os04t0680000-00
Chr04	irgsp1_rep	CDS	34729042	34729127	.	+	0	Parent=Os04t0680000-00
Chr04	irgsp1_rep	CDS	34729723	34729813	.	+	1	Parent=Os04t0680000-00
Chr04	irgsp1_rep	CDS	34729893	34729973	.	+	0	Parent=Os04t0680000-00
Chr04	irgsp1_rep	CDS	34730055	34730129	.	+	0	Parent=Os04t0680000-00
Chr04	irgsp1_rep	CDS	34730256	34730390	.	+	0	Parent=Os04t0680000-00
Chr04	irgsp1_rep	three_prime_UTR	34730391	34730395	.	+	.	Parent=Os04t0680000-00
Chr04	irgsp1_rep	mRNA	34733807	34736093	.	-	.	ID=Os04t0680300-01;Name=Os04t0680300-01;Locus_id=Os04g0680300;Oryzabase Gene Symbol Synonym(s)=OsSTA137;Note=Conserved hypothetical protein.;Transcript_evidence=AK121081 (DDBJ%2C Best hit);ORF_evidence=B8ARH3 (UniProt);NIAS_FLcDNA=J023063D06;Oryzabase=19426;Expression=AK121081;TENOR=Os04t0680300-01;KEGG=Os04t0680300-01
Chr04	irgsp1_rep	five_prime_UTR	34735963	34736093	.	-	.	Parent=Os04t0680300-01
Chr04	irgsp1_rep	CDS	34735887	34735962	.	-	0	Parent=Os04t0680300-01
Chr04	irgsp1_rep	CDS	34735723	34735776	.	-	2	Parent=Os04t0680300-01
Chr04	irgsp1_rep	CDS	34735034	34735137	.	-	2	Parent=Os04t0680300-01
Chr04	irgsp1_rep	CDS	34734236	34734274	.	-	0	Parent=Os04t0680300-01
Chr04	irgsp1_rep	CDS	34733994	34734137	.	-	0	Parent=Os04t0680300-01
Chr04	irgsp1_rep	three_prime_UTR	34733807	34733993	.	-	.	Parent=Os04t0680300-01
Chr04	irgsp1_rep	mRNA	34738022	34742715	.	+	.	ID=Os04t0680400-01;Name=Os04t0680400-01;Locus_id=Os04g0680400;RAP-DB Gene Symbol Synonym(s)=OsALN;RAP-DB Gene Name Synonym(s)=ALLANTOINASE;CGSNL Gene Symbol=ALN;CGSNL Gene Name=ALLANTOINASE;Oryzabase Gene Symbol Synonym(s)=OsALN;Oryzabase Gene Name Synonym(s)=allantoin amidohydrolase%2C allantoinase;Note=Allantoinase (EC:3.5.2.5)%2C Ureide metabolism%2C Nitrogen molecular sensor;Transcript_evidence=AK067234;ORF_evidence=B9FDB8;GO=Molecular Function: hydrolase activity (GO:0016787),Molecular Function: hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds (GO:0016810);InterPro=Metal-dependent hydrolase%2C composite domain superfamily (IPR011059),Metal-dependent hydrolase (IPR032466),Amidohydrolase-related (IPR006680);NIAS_FLcDNA=J013096D14;Manual Curation=May 15%2C 2018;Literature_PMID=29720986;Oryzabase=20258;TENOR=Os04t0680400-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34738022	34738081	.	+	.	Parent=Os04t0680400-01
Chr04	irgsp1_rep	CDS	34738082	34738177	.	+	0	Parent=Os04t0680400-01
Chr04	irgsp1_rep	CDS	34738269	34738365	.	+	0	Parent=Os04t0680400-01
Chr04	irgsp1_rep	CDS	34738518	34738635	.	+	2	Parent=Os04t0680400-01
Chr04	irgsp1_rep	CDS	34738734	34738807	.	+	1	Parent=Os04t0680400-01
Chr04	irgsp1_rep	CDS	34739175	34739251	.	+	2	Parent=Os04t0680400-01
Chr04	irgsp1_rep	CDS	34739354	34739390	.	+	0	Parent=Os04t0680400-01
Chr04	irgsp1_rep	CDS	34739554	34739639	.	+	2	Parent=Os04t0680400-01
Chr04	irgsp1_rep	CDS	34739911	34739970	.	+	0	Parent=Os04t0680400-01
Chr04	irgsp1_rep	CDS	34740079	34740224	.	+	0	Parent=Os04t0680400-01
Chr04	irgsp1_rep	CDS	34740643	34740768	.	+	1	Parent=Os04t0680400-01
Chr04	irgsp1_rep	CDS	34741026	34741059	.	+	1	Parent=Os04t0680400-01
Chr04	irgsp1_rep	three_prime_UTR	34741060	34741181	.	+	.	Parent=Os04t0680400-01
Chr04	irgsp1_rep	three_prime_UTR	34741271	34741381	.	+	.	Parent=Os04t0680400-01
Chr04	irgsp1_rep	three_prime_UTR	34741587	34741697	.	+	.	Parent=Os04t0680400-01
Chr04	irgsp1_rep	three_prime_UTR	34741902	34742000	.	+	.	Parent=Os04t0680400-01
Chr04	irgsp1_rep	three_prime_UTR	34742178	34742313	.	+	.	Parent=Os04t0680400-01
Chr04	irgsp1_rep	three_prime_UTR	34742406	34742715	.	+	.	Parent=Os04t0680400-01
Chr04	irgsp1_rep	mRNA	34746534	34749766	.	-	.	ID=Os04t0680550-00;Name=Os04t0680550-00;Locus_id=Os04g0680550;Note=Similar to Tyrosyl-tRNA synthetase.;Transcript_evidence=EU962480 (DDBJ);ORF_evidence=B6TBW5 (UniProt);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: tyrosine-tRNA ligase activity (GO:0004831),Molecular Function: ATP binding (GO:0005524);InterPro=Aminoacyl-tRNA synthetase%2C class Ic (IPR002305),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Tyrosyl-tRNA synthetase%2C archaeal-type (IPR023617);TENOR=Os04t0680550-00
Chr04	irgsp1_rep	CDS	34749614	34749766	.	-	0	Parent=Os04t0680550-00
Chr04	irgsp1_rep	CDS	34748813	34749096	.	-	0	Parent=Os04t0680550-00
Chr04	irgsp1_rep	CDS	34748594	34748690	.	-	1	Parent=Os04t0680550-00
Chr04	irgsp1_rep	CDS	34748071	34748182	.	-	0	Parent=Os04t0680550-00
Chr04	irgsp1_rep	CDS	34747796	34747878	.	-	2	Parent=Os04t0680550-00
Chr04	irgsp1_rep	CDS	34746827	34746972	.	-	0	Parent=Os04t0680550-00
Chr04	irgsp1_rep	CDS	34746534	34746657	.	-	1	Parent=Os04t0680550-00
Chr04	irgsp1_rep	mRNA	34751498	34756030	.	+	.	ID=Os04t0680700-01;Name=Os04t0680700-01;Locus_id=Os04g0680700;Note=DNA mismatch repair protein MutS%2C core domain containing protein.;Transcript_evidence=AK120361 (DDBJ%2C Best hit);ORF_evidence=Q259B3 (UniProt);GO=Biological Process: mismatch repair (GO:0006298),Biological Process: maintenance of fidelity involved in DNA-dependent DNA replication (GO:0045005),Molecular Function: damaged DNA binding (GO:0003684),Molecular Function: ATP binding (GO:0005524),Molecular Function: mismatched DNA binding (GO:0030983);InterPro=DNA mismatch repair protein MutS%2C C-terminal (IPR000432),DNA mismatch repair protein MutS%2C type 2 (IPR005747),DNA mismatch repair protein MutS%2C core (IPR007696);NIAS_FLcDNA=J013067O03;Expression=AK120361;TENOR=Os04t0680700-01;KEGG=Os04t0680700-01
Chr04	irgsp1_rep	five_prime_UTR	34751498	34751616	.	+	.	Parent=Os04t0680700-01
Chr04	irgsp1_rep	CDS	34751617	34752176	.	+	0	Parent=Os04t0680700-01
Chr04	irgsp1_rep	CDS	34752294	34753227	.	+	1	Parent=Os04t0680700-01
Chr04	irgsp1_rep	three_prime_UTR	34753228	34753812	.	+	.	Parent=Os04t0680700-01
Chr04	irgsp1_rep	three_prime_UTR	34753927	34754385	.	+	.	Parent=Os04t0680700-01
Chr04	irgsp1_rep	three_prime_UTR	34755297	34756030	.	+	.	Parent=Os04t0680700-01
Chr04	irgsp1_rep	mRNA	34751506	34752338	.	+	.	ID=Os04t0680700-02;Name=Os04t0680700-02;Locus_id=Os04g0680700;Note=Similar to H0901F07.7 protein.;Transcript_evidence=AK107890 (DDBJ%2C Best hit);ORF_evidence=Q259B3 (UniProt);NIAS_FLcDNA=002-134-E06;Expression=AK107890;TENOR=Os04t0680700-02;KEGG=Os04t0680700-02
Chr04	irgsp1_rep	five_prime_UTR	34751506	34751616	.	+	.	Parent=Os04t0680700-02
Chr04	irgsp1_rep	CDS	34751617	34752180	.	+	0	Parent=Os04t0680700-02
Chr04	irgsp1_rep	three_prime_UTR	34752181	34752338	.	+	.	Parent=Os04t0680700-02
Chr04	irgsp1_rep	mRNA	34761220	34763488	.	+	.	ID=Os04t0680800-01;Name=Os04t0680800-01;Locus_id=Os04g0680800;CGSNL Gene Symbol=MLO_;CGSNL Gene Name=POWDERY-MILDEW-RESISTANCE GENE O_;Oryzabase Gene Symbol Synonym(s)=OsMLO4%2C MLO4;Oryzabase Gene Name Synonym(s)=powdery-MiLdew-resistance gene O4%2C Mildew resistance Locus O-4;Note=Mlo-related protein family protein.;Transcript_evidence=AK111773 (DDBJ%2C Best hit);ORF_evidence=Q259B2 (UniProt);GO=Biological Process: cell death (GO:0008219),Cellular Component: integral to membrane (GO:0016021);InterPro=Mlo-related protein (IPR004326);NIAS_FLcDNA=J023063D20;Oryzabase=9187;Expression=AK111773;TENOR=Os04t0680800-01;KEGG=Os04t0680800-01
Chr04	irgsp1_rep	five_prime_UTR	34761220	34761220	.	+	.	Parent=Os04t0680800-01
Chr04	irgsp1_rep	CDS	34761221	34761264	.	+	0	Parent=Os04t0680800-01
Chr04	irgsp1_rep	CDS	34761392	34761441	.	+	1	Parent=Os04t0680800-01
Chr04	irgsp1_rep	CDS	34761530	34761570	.	+	2	Parent=Os04t0680800-01
Chr04	irgsp1_rep	CDS	34761647	34761811	.	+	0	Parent=Os04t0680800-01
Chr04	irgsp1_rep	CDS	34761897	34761932	.	+	0	Parent=Os04t0680800-01
Chr04	irgsp1_rep	CDS	34762067	34762134	.	+	0	Parent=Os04t0680800-01
Chr04	irgsp1_rep	CDS	34762225	34762285	.	+	1	Parent=Os04t0680800-01
Chr04	irgsp1_rep	CDS	34762741	34763256	.	+	0	Parent=Os04t0680800-01
Chr04	irgsp1_rep	three_prime_UTR	34763257	34763488	.	+	.	Parent=Os04t0680800-01
Chr04	irgsp1_rep	mRNA	34780497	34785123	.	-	.	ID=Os04t0681400-01;Name=Os04t0681400-01;Locus_id=Os04g0681400;Note=Protein of unknown function DUF580 family protein.;Transcript_evidence=AK071744 (DDBJ%2C Best hit);ORF_evidence=Q259C4 (UniProt);InterPro=Choline transporter-like (IPR007603);NIAS_FLcDNA=J023107N13;Expression=AK071744;TENOR=Os04t0681400-01;KEGG=Os04t0681400-01
Chr04	irgsp1_rep	five_prime_UTR	34784996	34785123	.	-	.	Parent=Os04t0681400-01
Chr04	irgsp1_rep	CDS	34784775	34784995	.	-	0	Parent=Os04t0681400-01
Chr04	irgsp1_rep	CDS	34783491	34783849	.	-	1	Parent=Os04t0681400-01
Chr04	irgsp1_rep	CDS	34783212	34783357	.	-	2	Parent=Os04t0681400-01
Chr04	irgsp1_rep	CDS	34782702	34782885	.	-	0	Parent=Os04t0681400-01
Chr04	irgsp1_rep	CDS	34782516	34782589	.	-	2	Parent=Os04t0681400-01
Chr04	irgsp1_rep	CDS	34782329	34782442	.	-	0	Parent=Os04t0681400-01
Chr04	irgsp1_rep	CDS	34781806	34782162	.	-	0	Parent=Os04t0681400-01
Chr04	irgsp1_rep	CDS	34781454	34781714	.	-	0	Parent=Os04t0681400-01
Chr04	irgsp1_rep	CDS	34781048	34781275	.	-	0	Parent=Os04t0681400-01
Chr04	irgsp1_rep	CDS	34780752	34780943	.	-	0	Parent=Os04t0681400-01
Chr04	irgsp1_rep	three_prime_UTR	34780497	34780751	.	-	.	Parent=Os04t0681400-01
Chr04	irgsp1_rep	mRNA	34780751	34783875	.	+	.	ID=Os04t0681450-00;Name=Os04t0681450-00;Locus_id=Os04g0681450;Note=Hypothetical protein.;Transcript_evidence=tplb0044e23 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0681450-00
Chr04	irgsp1_rep	five_prime_UTR	34780751	34780803	.	+	.	Parent=Os04t0681450-00
Chr04	irgsp1_rep	CDS	34780804	34780937	.	+	0	Parent=Os04t0681450-00
Chr04	irgsp1_rep	CDS	34781042	34781264	.	+	1	Parent=Os04t0681450-00
Chr04	irgsp1_rep	CDS	34781437	34781463	.	+	0	Parent=Os04t0681450-00
Chr04	irgsp1_rep	three_prime_UTR	34781464	34781704	.	+	.	Parent=Os04t0681450-00
Chr04	irgsp1_rep	three_prime_UTR	34781789	34782187	.	+	.	Parent=Os04t0681450-00
Chr04	irgsp1_rep	three_prime_UTR	34782353	34782445	.	+	.	Parent=Os04t0681450-00
Chr04	irgsp1_rep	three_prime_UTR	34782524	34782589	.	+	.	Parent=Os04t0681450-00
Chr04	irgsp1_rep	three_prime_UTR	34782702	34782879	.	+	.	Parent=Os04t0681450-00
Chr04	irgsp1_rep	three_prime_UTR	34783203	34783352	.	+	.	Parent=Os04t0681450-00
Chr04	irgsp1_rep	three_prime_UTR	34783486	34783875	.	+	.	Parent=Os04t0681450-00
Chr04	irgsp1_rep	mRNA	34787366	34790215	.	+	.	ID=Os04t0681500-01;Name=Os04t0681500-01;Locus_id=Os04g0681500;Note=EF-Hand type domain containing protein.;Transcript_evidence=AK105582 (DDBJ%2C Best hit);ORF_evidence=Q259C3 (UniProt);GO=Biological Process: signal transduction (GO:0007165),Cellular Component: proteinaceous extracellular matrix (GO:0005578),Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249),SPARC/Testican%2C calcium-binding domain (IPR019577);NIAS_FLcDNA=001-128-E08;Expression=AK105582;TENOR=Os04t0681500-01;KEGG=Os04t0681500-01
Chr04	irgsp1_rep	five_prime_UTR	34787366	34787488	.	+	.	Parent=Os04t0681500-01
Chr04	irgsp1_rep	CDS	34787489	34787778	.	+	0	Parent=Os04t0681500-01
Chr04	irgsp1_rep	CDS	34787871	34788112	.	+	1	Parent=Os04t0681500-01
Chr04	irgsp1_rep	CDS	34789104	34789206	.	+	2	Parent=Os04t0681500-01
Chr04	irgsp1_rep	CDS	34789315	34789378	.	+	1	Parent=Os04t0681500-01
Chr04	irgsp1_rep	CDS	34789496	34789659	.	+	0	Parent=Os04t0681500-01
Chr04	irgsp1_rep	CDS	34789750	34789843	.	+	1	Parent=Os04t0681500-01
Chr04	irgsp1_rep	CDS	34789949	34790086	.	+	0	Parent=Os04t0681500-01
Chr04	irgsp1_rep	three_prime_UTR	34790087	34790215	.	+	.	Parent=Os04t0681500-01
Chr04	irgsp1_rep	mRNA	34791847	34800725	.	-	.	ID=Os04t0681600-01;Name=Os04t0681600-01;Locus_id=Os04g0681600;Note=Protein of unknown function DUF580 family protein.;Transcript_evidence=AK105243 (DDBJ%2C Best hit);ORF_evidence=Q259C4 (UniProt);InterPro=Choline transporter-like (IPR007603);NIAS_FLcDNA=001-113-E05;Expression=AK105243;TENOR=Os04t0681600-01;KEGG=Os04t0681600-01
Chr04	irgsp1_rep	five_prime_UTR	34800653	34800725	.	-	.	Parent=Os04t0681600-01
Chr04	irgsp1_rep	CDS	34800432	34800652	.	-	0	Parent=Os04t0681600-01
Chr04	irgsp1_rep	CDS	34794814	34795172	.	-	1	Parent=Os04t0681600-01
Chr04	irgsp1_rep	CDS	34794548	34794693	.	-	2	Parent=Os04t0681600-01
Chr04	irgsp1_rep	CDS	34794039	34794222	.	-	0	Parent=Os04t0681600-01
Chr04	irgsp1_rep	CDS	34793853	34793926	.	-	2	Parent=Os04t0681600-01
Chr04	irgsp1_rep	CDS	34793666	34793779	.	-	0	Parent=Os04t0681600-01
Chr04	irgsp1_rep	CDS	34793121	34793477	.	-	0	Parent=Os04t0681600-01
Chr04	irgsp1_rep	CDS	34792767	34793027	.	-	0	Parent=Os04t0681600-01
Chr04	irgsp1_rep	CDS	34792370	34792597	.	-	0	Parent=Os04t0681600-01
Chr04	irgsp1_rep	CDS	34792071	34792262	.	-	0	Parent=Os04t0681600-01
Chr04	irgsp1_rep	three_prime_UTR	34791847	34792070	.	-	.	Parent=Os04t0681600-01
Chr04	irgsp1_rep	mRNA	34792071	34800629	.	+	.	ID=Os04t0681625-00;Name=Os04t0681625-00;Locus_id=Os04g0681625;Note=Hypothetical protein.;Transcript_evidence=tplb0044e23 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0681625-00
Chr04	irgsp1_rep	five_prime_UTR	34792071	34792267	.	+	.	Parent=Os04t0681625-00
Chr04	irgsp1_rep	five_prime_UTR	34792378	34792586	.	+	.	Parent=Os04t0681625-00
Chr04	irgsp1_rep	five_prime_UTR	34792750	34793017	.	+	.	Parent=Os04t0681625-00
Chr04	irgsp1_rep	five_prime_UTR	34793104	34793498	.	+	.	Parent=Os04t0681625-00
Chr04	irgsp1_rep	five_prime_UTR	34793677	34793767	.	+	.	Parent=Os04t0681625-00
Chr04	irgsp1_rep	five_prime_UTR	34793840	34793926	.	+	.	Parent=Os04t0681625-00
Chr04	irgsp1_rep	five_prime_UTR	34794039	34794216	.	+	.	Parent=Os04t0681625-00
Chr04	irgsp1_rep	five_prime_UTR	34794539	34794640	.	+	.	Parent=Os04t0681625-00
Chr04	irgsp1_rep	CDS	34794641	34794688	.	+	0	Parent=Os04t0681625-00
Chr04	irgsp1_rep	CDS	34794809	34794976	.	+	0	Parent=Os04t0681625-00
Chr04	irgsp1_rep	three_prime_UTR	34794977	34795580	.	+	.	Parent=Os04t0681625-00
Chr04	irgsp1_rep	three_prime_UTR	34800079	34800629	.	+	.	Parent=Os04t0681625-00
Chr04	irgsp1_rep	mRNA	34810658	34813513	.	-	.	ID=Os04t0681900-01;Name=Os04t0681900-01;Locus_id=Os04g0681900;CGSNL Gene Symbol=ACBP4;CGSNL Gene Name=ACYL-COA-BINDING PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OsACBP4;Oryzabase Gene Name Synonym(s)=Acyl-CoA-binding protein 4;Note=Similar to H0124B04.8 protein.;Transcript_evidence=AK067889 (DDBJ%2C Best hit);ORF_evidence=Q259C6 (UniProt);GO=Molecular Function: fatty-acyl-CoA binding (GO:0000062),Molecular Function: binding (GO:0005488);InterPro=Acyl-CoA-binding protein%2C ACBP (IPR000582),FERM/acyl-CoA-binding protein%2C 3-helical bundle (IPR014352);NIAS_FLcDNA=J013124M11;Oryzabase=18294;TENOR=Os04t0681900-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34813411	34813513	.	-	.	Parent=Os04t0681900-01
Chr04	irgsp1_rep	CDS	34812967	34813410	.	-	0	Parent=Os04t0681900-01
Chr04	irgsp1_rep	three_prime_UTR	34812248	34812966	.	-	.	Parent=Os04t0681900-01
Chr04	irgsp1_rep	three_prime_UTR	34811959	34812065	.	-	.	Parent=Os04t0681900-01
Chr04	irgsp1_rep	three_prime_UTR	34811601	34811692	.	-	.	Parent=Os04t0681900-01
Chr04	irgsp1_rep	three_prime_UTR	34810658	34811507	.	-	.	Parent=Os04t0681900-01
Chr04	irgsp1_rep	mRNA	34810656	34813508	.	-	.	ID=Os04t0681900-02;Name=Os04t0681900-02;Locus_id=Os04g0681900;RAP-DB Gene Symbol Synonym(s)=OsACBP4;RAP-DB Gene Name Synonym(s)=Acyl-CoA-binding protein 4;CGSNL Gene Symbol=ACBP4;CGSNL Gene Name=ACYL-COA-BINDING PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OsACBP4;Oryzabase Gene Name Synonym(s)=Acyl-CoA-binding protein 4;Note=Acyl-CoA-binding protein %2C Stress response;Transcript_evidence=AK105775;ORF_evidence=Q7XPW9;GO=Molecular Function: fatty-acyl-CoA binding (GO:0000062),Molecular Function: protein binding (GO:0005515);InterPro=FERM/acyl-CoA-binding protein%2C 3-helical bundle (IPR014352),Acyl-CoA-binding protein%2C ACBP (IPR000582),Ankyrin repeat-containing domain (IPR020683),Ankyrin repeat (IPR002110);NIAS_FLcDNA=001-202-F04;Manual Curation=February 16%2C 2015;Literature_PMID=24738983,21128943;Oryzabase=18294;TENOR=Os04t0681900-02;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34813411	34813508	.	-	.	Parent=Os04t0681900-02
Chr04	irgsp1_rep	CDS	34812971	34813410	.	-	0	Parent=Os04t0681900-02
Chr04	irgsp1_rep	CDS	34812248	34812353	.	-	1	Parent=Os04t0681900-02
Chr04	irgsp1_rep	CDS	34811959	34812065	.	-	0	Parent=Os04t0681900-02
Chr04	irgsp1_rep	CDS	34811601	34811692	.	-	1	Parent=Os04t0681900-02
Chr04	irgsp1_rep	CDS	34811410	34811507	.	-	2	Parent=Os04t0681900-02
Chr04	irgsp1_rep	CDS	34810919	34811086	.	-	0	Parent=Os04t0681900-02
Chr04	irgsp1_rep	three_prime_UTR	34810656	34810918	.	-	.	Parent=Os04t0681900-02
Chr04	irgsp1_rep	mRNA	34814582	34815940	.	-	.	ID=Os04t0681950-00;Name=Os04t0681950-00;Locus_id=Os04g0681950;Note=Similar to H0124B04.9 protein.;Transcript_evidence=BT043235 (DDBJ);ORF_evidence=Q259F3 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);TENOR=Os04t0681950-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	34814585	34815940	.	-	0	Parent=Os04t0681950-00
Chr04	irgsp1_rep	three_prime_UTR	34814582	34814584	.	-	.	Parent=Os04t0681950-00
Chr04	irgsp1_rep	mRNA	34816665	34820086	.	-	.	ID=Os04t0682000-01;Name=Os04t0682000-01;Locus_id=Os04g0682000;CGSNL Gene Symbol=ATG4;CGSNL Gene Name=AUTOPHAGY ASSOCIATED GENE 4;Oryzabase Gene Symbol Synonym(s)=Atg4%2C OsAtg4%2C APG4%2C Atg4b%2C OsATG4b;Oryzabase Gene Name Synonym(s)=autophagy 4%2C AUTOPHAGY RELATED4b%2C autophagy 4b%2C AUTOPHAGY ASSOCIATED GENE 4B;Note=Similar to Autophagy 4a.;Transcript_evidence=AK069012 (DDBJ%2C Best hit);ORF_evidence=Q7XPW8 (UniProt);InterPro=Peptidase C54 (IPR005078);NIAS_FLcDNA=J023002M16;Oryzabase=8920;Expression=AK069012;TENOR=Os04t0682000-01;KEGG=Os04t0682000-01 (EC:3.4.22.-)
Chr04	irgsp1_rep	five_prime_UTR	34819820	34820086	.	-	.	Parent=Os04t0682000-01
Chr04	irgsp1_rep	five_prime_UTR	34819414	34819586	.	-	.	Parent=Os04t0682000-01
Chr04	irgsp1_rep	CDS	34818975	34819413	.	-	0	Parent=Os04t0682000-01
Chr04	irgsp1_rep	CDS	34818799	34818884	.	-	2	Parent=Os04t0682000-01
Chr04	irgsp1_rep	CDS	34818664	34818714	.	-	0	Parent=Os04t0682000-01
Chr04	irgsp1_rep	CDS	34818173	34818558	.	-	0	Parent=Os04t0682000-01
Chr04	irgsp1_rep	CDS	34817910	34818048	.	-	1	Parent=Os04t0682000-01
Chr04	irgsp1_rep	CDS	34817426	34817481	.	-	0	Parent=Os04t0682000-01
Chr04	irgsp1_rep	CDS	34817249	34817319	.	-	1	Parent=Os04t0682000-01
Chr04	irgsp1_rep	CDS	34816949	34817157	.	-	2	Parent=Os04t0682000-01
Chr04	irgsp1_rep	three_prime_UTR	34816665	34816948	.	-	.	Parent=Os04t0682000-01
Chr04	irgsp1_rep	mRNA	34820696	34823113	.	-	.	ID=Os04t0682050-01;Name=Os04t0682050-01;Locus_id=Os04g0682050;Note=Similar to H0403D02.15 protein.;Transcript_evidence=AK243564 (DDBJ%2C Best hit);ORF_evidence=B8ARI7 (UniProt);InterPro=Cytokine-induced anti-apoptosis inhibitor 1 (IPR007785);NIAS_FLcDNA=J100080M19;TENOR=Os04t0682050-01;KEGG=Os04t0682050-01
Chr04	irgsp1_rep	five_prime_UTR	34822896	34823113	.	-	.	Parent=Os04t0682050-01
Chr04	irgsp1_rep	CDS	34822763	34822895	.	-	0	Parent=Os04t0682050-01
Chr04	irgsp1_rep	CDS	34821956	34822110	.	-	2	Parent=Os04t0682050-01
Chr04	irgsp1_rep	CDS	34821780	34821875	.	-	0	Parent=Os04t0682050-01
Chr04	irgsp1_rep	CDS	34821542	34821701	.	-	0	Parent=Os04t0682050-01
Chr04	irgsp1_rep	CDS	34821320	34821456	.	-	2	Parent=Os04t0682050-01
Chr04	irgsp1_rep	CDS	34821104	34821178	.	-	0	Parent=Os04t0682050-01
Chr04	irgsp1_rep	CDS	34820965	34821003	.	-	0	Parent=Os04t0682050-01
Chr04	irgsp1_rep	three_prime_UTR	34820696	34820964	.	-	.	Parent=Os04t0682050-01
Chr04	irgsp1_rep	mRNA	34821110	34822111	.	+	.	ID=Os04t0682051-00;Name=Os04t0682051-00;Locus_id=Os04g0682051;Note=Non-protein coding transcript.;Transcript_evidence=BT086961 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0682051-00
Chr04	irgsp1_rep	exon	34821110	34821178	.	+	.	Parent=Os04t0682051-00
Chr04	irgsp1_rep	exon	34821320	34821459	.	+	.	Parent=Os04t0682051-00
Chr04	irgsp1_rep	exon	34821539	34821707	.	+	.	Parent=Os04t0682051-00
Chr04	irgsp1_rep	exon	34821782	34821866	.	+	.	Parent=Os04t0682051-00
Chr04	irgsp1_rep	exon	34821949	34822111	.	+	.	Parent=Os04t0682051-00
Chr04	irgsp1_rep	mRNA	34824492	34826306	.	+	.	ID=Os04t0682100-01;Name=Os04t0682100-01;Locus_id=Os04g0682100;Note=C2 calcium/lipid-binding region%2C CaLB domain containing protein.;Transcript_evidence=AK070539 (DDBJ%2C Best hit);ORF_evidence=Q259F2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=J023060G05;Expression=AK070539;TENOR=Os04t0682100-01;KEGG=Os04t0682100-01
Chr04	irgsp1_rep	five_prime_UTR	34824492	34824529	.	+	.	Parent=Os04t0682100-01
Chr04	irgsp1_rep	CDS	34824530	34824596	.	+	0	Parent=Os04t0682100-01
Chr04	irgsp1_rep	CDS	34825202	34825267	.	+	2	Parent=Os04t0682100-01
Chr04	irgsp1_rep	CDS	34825430	34825556	.	+	2	Parent=Os04t0682100-01
Chr04	irgsp1_rep	CDS	34825795	34825912	.	+	1	Parent=Os04t0682100-01
Chr04	irgsp1_rep	CDS	34826025	34826084	.	+	0	Parent=Os04t0682100-01
Chr04	irgsp1_rep	three_prime_UTR	34826085	34826306	.	+	.	Parent=Os04t0682100-01
Chr04	irgsp1_rep	mRNA	34828250	34831200	.	+	.	ID=Os04t0682300-01;Name=Os04t0682300-01;Locus_id=Os04g0682300;Oryzabase Gene Symbol Synonym(s)=OsPMM;Oryzabase Gene Name Synonym(s)=phosphomannomutase;Note=Similar to Phosphomannomutase 2 (EC 5.4.2.8) (PMM 2).;Transcript_evidence=AK061384 (DDBJ%2C Best hit);ORF_evidence=Q7XPW5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: mannose biosynthetic process (GO:0019307),Cellular Component: cytoplasm (GO:0005737),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphomannomutase activity (GO:0004615);InterPro=Eukaryotic phosphomannomutase (IPR005002),HAD-superfamily hydrolase%2C subfamily IIB (IPR006379),HAD-like domain (IPR023214);NIAS_FLcDNA=006-304-H09;Oryzabase=14197;Expression=AK061384;TENOR=Os04t0682300-01;KEGG=Os04t0682300-01 (EC:5.4.2.8)
Chr04	irgsp1_rep	five_prime_UTR	34828250	34828553	.	+	.	Parent=Os04t0682300-01
Chr04	irgsp1_rep	CDS	34828554	34828625	.	+	0	Parent=Os04t0682300-01
Chr04	irgsp1_rep	CDS	34828758	34828802	.	+	0	Parent=Os04t0682300-01
Chr04	irgsp1_rep	CDS	34828910	34828976	.	+	0	Parent=Os04t0682300-01
Chr04	irgsp1_rep	CDS	34829097	34829173	.	+	2	Parent=Os04t0682300-01
Chr04	irgsp1_rep	CDS	34829433	34829468	.	+	0	Parent=Os04t0682300-01
Chr04	irgsp1_rep	CDS	34829550	34829605	.	+	0	Parent=Os04t0682300-01
Chr04	irgsp1_rep	CDS	34829679	34829778	.	+	1	Parent=Os04t0682300-01
Chr04	irgsp1_rep	CDS	34829858	34829953	.	+	0	Parent=Os04t0682300-01
Chr04	irgsp1_rep	CDS	34830030	34830119	.	+	0	Parent=Os04t0682300-01
Chr04	irgsp1_rep	CDS	34830329	34830380	.	+	0	Parent=Os04t0682300-01
Chr04	irgsp1_rep	CDS	34830964	34831019	.	+	2	Parent=Os04t0682300-01
Chr04	irgsp1_rep	three_prime_UTR	34831020	34831200	.	+	.	Parent=Os04t0682300-01
Chr04	irgsp1_rep	mRNA	34828285	34831192	.	+	.	ID=Os04t0682300-02;Name=Os04t0682300-02;Locus_id=Os04g0682300;Oryzabase Gene Symbol Synonym(s)=OsPMM;Oryzabase Gene Name Synonym(s)=phosphomannomutase;Note=Similar to Phosphomannomutase 2 (EC 5.4.2.8) (PMM 2).;Transcript_evidence=AK104004 (DDBJ%2C Best hit);ORF_evidence=Q7XPW5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: mannose biosynthetic process (GO:0019307),Cellular Component: cytoplasm (GO:0005737),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphomannomutase activity (GO:0004615);InterPro=Eukaryotic phosphomannomutase (IPR005002),HAD-superfamily hydrolase%2C subfamily IIB (IPR006379),HAD-like domain (IPR023214);NIAS_FLcDNA=001-002-C04;Oryzabase=14197;Expression=AK104004;TENOR=Os04t0682300-02;KEGG=Os04t0682300-02 (EC:5.4.2.8)
Chr04	irgsp1_rep	five_prime_UTR	34828285	34828553	.	+	.	Parent=Os04t0682300-02
Chr04	irgsp1_rep	CDS	34828554	34828625	.	+	0	Parent=Os04t0682300-02
Chr04	irgsp1_rep	CDS	34828758	34828802	.	+	0	Parent=Os04t0682300-02
Chr04	irgsp1_rep	CDS	34828910	34828976	.	+	0	Parent=Os04t0682300-02
Chr04	irgsp1_rep	CDS	34829097	34829173	.	+	2	Parent=Os04t0682300-02
Chr04	irgsp1_rep	CDS	34829433	34829468	.	+	0	Parent=Os04t0682300-02
Chr04	irgsp1_rep	CDS	34829550	34829605	.	+	0	Parent=Os04t0682300-02
Chr04	irgsp1_rep	CDS	34829679	34829778	.	+	1	Parent=Os04t0682300-02
Chr04	irgsp1_rep	CDS	34829858	34829953	.	+	0	Parent=Os04t0682300-02
Chr04	irgsp1_rep	CDS	34830030	34830119	.	+	0	Parent=Os04t0682300-02
Chr04	irgsp1_rep	CDS	34830329	34830380	.	+	0	Parent=Os04t0682300-02
Chr04	irgsp1_rep	CDS	34830964	34831019	.	+	2	Parent=Os04t0682300-02
Chr04	irgsp1_rep	three_prime_UTR	34831020	34831192	.	+	.	Parent=Os04t0682300-02
Chr04	irgsp1_rep	mRNA	34828285	34831192	.	+	.	ID=Os04t0682300-03;Name=Os04t0682300-03;Locus_id=Os04g0682300;Oryzabase Gene Symbol Synonym(s)=OsPMM;Oryzabase Gene Name Synonym(s)=phosphomannomutase;Note=Similar to cDNA clone:001-002-C04%2C full insert sequence.;Transcript_evidence=AK073871 (DDBJ%2C Best hit);ORF_evidence=B7E696 (UniProt);GO=Biological Process: mannose biosynthetic process (GO:0019307),Cellular Component: cytoplasm (GO:0005737),Molecular Function: phosphomannomutase activity (GO:0004615);InterPro=Eukaryotic phosphomannomutase (IPR005002),HAD-like domain (IPR023214);NIAS_FLcDNA=J033075F07;Oryzabase=14197;Expression=AK073871;TENOR=Os04t0682300-03;KEGG=Os04t0682300-03 (EC:5.4.2.8)
Chr04	irgsp1_rep	five_prime_UTR	34828285	34828553	.	+	.	Parent=Os04t0682300-03
Chr04	irgsp1_rep	CDS	34828554	34828625	.	+	0	Parent=Os04t0682300-03
Chr04	irgsp1_rep	CDS	34828758	34828802	.	+	0	Parent=Os04t0682300-03
Chr04	irgsp1_rep	CDS	34828910	34828976	.	+	0	Parent=Os04t0682300-03
Chr04	irgsp1_rep	CDS	34829097	34829185	.	+	2	Parent=Os04t0682300-03
Chr04	irgsp1_rep	three_prime_UTR	34829186	34829468	.	+	.	Parent=Os04t0682300-03
Chr04	irgsp1_rep	three_prime_UTR	34829550	34829605	.	+	.	Parent=Os04t0682300-03
Chr04	irgsp1_rep	three_prime_UTR	34829679	34829778	.	+	.	Parent=Os04t0682300-03
Chr04	irgsp1_rep	three_prime_UTR	34829858	34829953	.	+	.	Parent=Os04t0682300-03
Chr04	irgsp1_rep	three_prime_UTR	34830030	34830119	.	+	.	Parent=Os04t0682300-03
Chr04	irgsp1_rep	three_prime_UTR	34830329	34831192	.	+	.	Parent=Os04t0682300-03
Chr04	irgsp1_rep	mRNA	34832052	34837342	.	-	.	ID=Os04t0682400-01;Name=Os04t0682400-01;Locus_id=Os04g0682400;Note=Similar to H0124B04.13 protein.;Transcript_evidence=AK072470 (DDBJ%2C Best hit);ORF_evidence=Q259G3 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),RNA recognition motif domain%2C eukaryote (IPR003954),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023121E15;TENOR=Os04t0682400-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34837332	34837342	.	-	.	Parent=Os04t0682400-01
Chr04	irgsp1_rep	CDS	34837068	34837331	.	-	0	Parent=Os04t0682400-01
Chr04	irgsp1_rep	CDS	34835022	34835254	.	-	0	Parent=Os04t0682400-01
Chr04	irgsp1_rep	CDS	34832420	34834949	.	-	1	Parent=Os04t0682400-01
Chr04	irgsp1_rep	three_prime_UTR	34832052	34832419	.	-	.	Parent=Os04t0682400-01
Chr04	irgsp1_rep	mRNA	34839497	34843336	.	+	.	ID=Os04t0682500-01;Name=Os04t0682500-01;Locus_id=Os04g0682500;Note=Peptidase T2%2C asparaginase 2 domain containing protein.;Transcript_evidence=AK121739 (DDBJ%2C Best hit),AK064978 (DDBJ%2C Best hit);ORF_evidence=B9FDD0 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Peptidase T2%2C asparaginase 2 (IPR000246);NIAS_FLcDNA=J033085H01,J013001C03;TENOR=Os04t0682500-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34839497	34839550	.	+	.	Parent=Os04t0682500-01
Chr04	irgsp1_rep	CDS	34839551	34839778	.	+	0	Parent=Os04t0682500-01
Chr04	irgsp1_rep	CDS	34840045	34840095	.	+	0	Parent=Os04t0682500-01
Chr04	irgsp1_rep	CDS	34840395	34840515	.	+	0	Parent=Os04t0682500-01
Chr04	irgsp1_rep	CDS	34840602	34840686	.	+	2	Parent=Os04t0682500-01
Chr04	irgsp1_rep	CDS	34841087	34841168	.	+	1	Parent=Os04t0682500-01
Chr04	irgsp1_rep	CDS	34841258	34841387	.	+	0	Parent=Os04t0682500-01
Chr04	irgsp1_rep	CDS	34841870	34842033	.	+	2	Parent=Os04t0682500-01
Chr04	irgsp1_rep	CDS	34842164	34842327	.	+	0	Parent=Os04t0682500-01
Chr04	irgsp1_rep	CDS	34842671	34842791	.	+	1	Parent=Os04t0682500-01
Chr04	irgsp1_rep	CDS	34842865	34842966	.	+	0	Parent=Os04t0682500-01
Chr04	irgsp1_rep	CDS	34843071	34843160	.	+	0	Parent=Os04t0682500-01
Chr04	irgsp1_rep	three_prime_UTR	34843161	34843336	.	+	.	Parent=Os04t0682500-01
Chr04	irgsp1_rep	mRNA	34852968	34854888	.	-	.	ID=Os04t0682600-01;Name=Os04t0682600-01;Locus_id=Os04g0682600;Note=Similar to H0502G05.7 protein.;Transcript_evidence=AK062587 (DDBJ%2C Best hit);ORF_evidence=Q01JF9 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Ribonuclease H-like (IPR012337);NIAS_FLcDNA=001-100-F10;TENOR=Os04t0682600-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34854888	34854888	.	-	.	Parent=Os04t0682600-01
Chr04	irgsp1_rep	CDS	34854672	34854887	.	-	0	Parent=Os04t0682600-01
Chr04	irgsp1_rep	three_prime_UTR	34852968	34854671	.	-	.	Parent=Os04t0682600-01
Chr04	irgsp1_rep	mRNA	34860430	34869589	.	-	.	ID=Os04t0682800-01;Name=Os04t0682800-01;Locus_id=Os04g0682800;RAP-DB Gene Symbol Synonym(s)=AM1;RAP-DB Gene Name Synonym(s)=Albino midrib 1;Oryzabase Gene Symbol Synonym(s)=OsAM1%2C AM1;Note=Potassium efflux antiporter%2C Chloroplast development%2C Drought tolerance;Transcript_evidence=AK121846;ORF_evidence=Q7XPW1;GO=Biological Process: cation transport (GO:0006812),Biological Process: potassium ion transport (GO:0006813),Biological Process: transmembrane transport (GO:0055085),Molecular Function: cation transmembrane transporter activity (GO:0008324),Molecular Function: solute:proton antiporter activity (GO:0015299),Cellular Component: integral component of membrane (GO:0016021);InterPro=Cation/H+ exchanger (IPR006153),K+/H+ exchanger (IPR004771),NAD(P)-binding domain (IPR016040),Regulator of K+ conductance%2C N-terminal (IPR003148);NIAS_FLcDNA=J033101J11;Manual Curation=July 21%2C 2015;Literature_PMID=24917171;Oryzabase=21754;TENOR=Os04t0682800-01
Chr04	irgsp1_rep	five_prime_UTR	34869259	34869589	.	-	.	Parent=Os04t0682800-01
Chr04	irgsp1_rep	five_prime_UTR	34869023	34869035	.	-	.	Parent=Os04t0682800-01
Chr04	irgsp1_rep	CDS	34867563	34869022	.	-	0	Parent=Os04t0682800-01
Chr04	irgsp1_rep	CDS	34867161	34867326	.	-	1	Parent=Os04t0682800-01
Chr04	irgsp1_rep	CDS	34866933	34867023	.	-	0	Parent=Os04t0682800-01
Chr04	irgsp1_rep	CDS	34866544	34866680	.	-	2	Parent=Os04t0682800-01
Chr04	irgsp1_rep	CDS	34866407	34866466	.	-	0	Parent=Os04t0682800-01
Chr04	irgsp1_rep	CDS	34866211	34866330	.	-	0	Parent=Os04t0682800-01
Chr04	irgsp1_rep	CDS	34865910	34865978	.	-	0	Parent=Os04t0682800-01
Chr04	irgsp1_rep	CDS	34865493	34865558	.	-	0	Parent=Os04t0682800-01
Chr04	irgsp1_rep	CDS	34864798	34864887	.	-	0	Parent=Os04t0682800-01
Chr04	irgsp1_rep	CDS	34864479	34864583	.	-	0	Parent=Os04t0682800-01
Chr04	irgsp1_rep	CDS	34864262	34864390	.	-	0	Parent=Os04t0682800-01
Chr04	irgsp1_rep	CDS	34863572	34863781	.	-	0	Parent=Os04t0682800-01
Chr04	irgsp1_rep	CDS	34863318	34863467	.	-	0	Parent=Os04t0682800-01
Chr04	irgsp1_rep	CDS	34863051	34863104	.	-	0	Parent=Os04t0682800-01
Chr04	irgsp1_rep	CDS	34862906	34862964	.	-	0	Parent=Os04t0682800-01
Chr04	irgsp1_rep	CDS	34862289	34862355	.	-	1	Parent=Os04t0682800-01
Chr04	irgsp1_rep	CDS	34862039	34862215	.	-	0	Parent=Os04t0682800-01
Chr04	irgsp1_rep	CDS	34861363	34861419	.	-	0	Parent=Os04t0682800-01
Chr04	irgsp1_rep	CDS	34861192	34861266	.	-	0	Parent=Os04t0682800-01
Chr04	irgsp1_rep	CDS	34860884	34861006	.	-	0	Parent=Os04t0682800-01
Chr04	irgsp1_rep	three_prime_UTR	34860430	34860883	.	-	.	Parent=Os04t0682800-01
Chr04	irgsp1_rep	mRNA	34860402	34867698	.	-	.	ID=Os04t0682800-02;Name=Os04t0682800-02;Locus_id=Os04g0682800;Oryzabase Gene Symbol Synonym(s)=OsAM1%2C AM1;Note=Similar to H0124B04.17 protein.;Transcript_evidence=AK068406 (DDBJ%2C Best hit);ORF_evidence=Q259F9 (UniProt);NIAS_FLcDNA=J013151M09;Oryzabase=21754;Expression=AK068406;TENOR=Os04t0682800-02;KEGG=Os04t0682800-02
Chr04	irgsp1_rep	five_prime_UTR	34867697	34867698	.	-	.	Parent=Os04t0682800-02
Chr04	irgsp1_rep	CDS	34867563	34867696	.	-	0	Parent=Os04t0682800-02
Chr04	irgsp1_rep	CDS	34867192	34867326	.	-	1	Parent=Os04t0682800-02
Chr04	irgsp1_rep	CDS	34866933	34867011	.	-	1	Parent=Os04t0682800-02
Chr04	irgsp1_rep	CDS	34866642	34866680	.	-	0	Parent=Os04t0682800-02
Chr04	irgsp1_rep	three_prime_UTR	34866544	34866641	.	-	.	Parent=Os04t0682800-02
Chr04	irgsp1_rep	three_prime_UTR	34866407	34866466	.	-	.	Parent=Os04t0682800-02
Chr04	irgsp1_rep	three_prime_UTR	34866211	34866330	.	-	.	Parent=Os04t0682800-02
Chr04	irgsp1_rep	three_prime_UTR	34865910	34865978	.	-	.	Parent=Os04t0682800-02
Chr04	irgsp1_rep	three_prime_UTR	34865493	34865558	.	-	.	Parent=Os04t0682800-02
Chr04	irgsp1_rep	three_prime_UTR	34864798	34864887	.	-	.	Parent=Os04t0682800-02
Chr04	irgsp1_rep	three_prime_UTR	34864479	34864583	.	-	.	Parent=Os04t0682800-02
Chr04	irgsp1_rep	three_prime_UTR	34864262	34864390	.	-	.	Parent=Os04t0682800-02
Chr04	irgsp1_rep	three_prime_UTR	34863572	34863781	.	-	.	Parent=Os04t0682800-02
Chr04	irgsp1_rep	three_prime_UTR	34863318	34863467	.	-	.	Parent=Os04t0682800-02
Chr04	irgsp1_rep	three_prime_UTR	34863051	34863104	.	-	.	Parent=Os04t0682800-02
Chr04	irgsp1_rep	three_prime_UTR	34862906	34862964	.	-	.	Parent=Os04t0682800-02
Chr04	irgsp1_rep	three_prime_UTR	34862289	34862355	.	-	.	Parent=Os04t0682800-02
Chr04	irgsp1_rep	three_prime_UTR	34862039	34862215	.	-	.	Parent=Os04t0682800-02
Chr04	irgsp1_rep	three_prime_UTR	34861363	34861419	.	-	.	Parent=Os04t0682800-02
Chr04	irgsp1_rep	three_prime_UTR	34861192	34861266	.	-	.	Parent=Os04t0682800-02
Chr04	irgsp1_rep	three_prime_UTR	34860402	34861006	.	-	.	Parent=Os04t0682800-02
Chr04	irgsp1_rep	mRNA	34867418	34867610	.	-	.	ID=Os04t0682800-03;Name=Os04t0682800-03;Locus_id=Os04g0682800;Oryzabase Gene Symbol Synonym(s)=OsAM1%2C AM1;Note=Non-protein coding transcript.;Transcript_evidence=AK060526 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-020-E12;Oryzabase=21754;TENOR=Os04t0682800-03
Chr04	irgsp1_rep	exon	34867418	34867610	.	-	.	Parent=Os04t0682800-03
Chr04	irgsp1_rep	mRNA	34862037	34866330	.	-	.	ID=Os04t0682800-04;Name=Os04t0682800-04;Locus_id=Os04g0682800;Oryzabase Gene Symbol Synonym(s)=OsAM1%2C AM1;Note=Similar to H0124B04.17 protein.;Transcript_evidence=AK103142 (DDBJ%2C Best hit);ORF_evidence=Q259F9 (UniProt);GO=Biological Process: cation transport (GO:0006812),Biological Process: potassium ion transport (GO:0006813),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: solute:hydrogen antiporter activity (GO:0015299);InterPro=Regulator of K+ conductance%2C N-terminal (IPR003148),Cation/H+ exchanger (IPR006153),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033120G14;Oryzabase=21754;TENOR=Os04t0682800-04
Chr04	irgsp1_rep	CDS	34866211	34866330	.	-	0	Parent=Os04t0682800-04
Chr04	irgsp1_rep	CDS	34865910	34865978	.	-	0	Parent=Os04t0682800-04
Chr04	irgsp1_rep	CDS	34865493	34865558	.	-	0	Parent=Os04t0682800-04
Chr04	irgsp1_rep	CDS	34864798	34864887	.	-	0	Parent=Os04t0682800-04
Chr04	irgsp1_rep	CDS	34864479	34864583	.	-	0	Parent=Os04t0682800-04
Chr04	irgsp1_rep	CDS	34864262	34864390	.	-	0	Parent=Os04t0682800-04
Chr04	irgsp1_rep	CDS	34863572	34863781	.	-	0	Parent=Os04t0682800-04
Chr04	irgsp1_rep	CDS	34863318	34863467	.	-	0	Parent=Os04t0682800-04
Chr04	irgsp1_rep	CDS	34863051	34863104	.	-	0	Parent=Os04t0682800-04
Chr04	irgsp1_rep	CDS	34862906	34862964	.	-	0	Parent=Os04t0682800-04
Chr04	irgsp1_rep	CDS	34862289	34862355	.	-	1	Parent=Os04t0682800-04
Chr04	irgsp1_rep	CDS	34862037	34862215	.	-	0	Parent=Os04t0682800-04
Chr04	irgsp1_rep	mRNA	34862277	34869026	.	+	.	ID=Os04t0682850-00;Name=Os04t0682850-00;Locus_id=Os04g0682850;Note=Hypothetical protein.;Transcript_evidence=AK363281 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0682850-00
Chr04	irgsp1_rep	five_prime_UTR	34862277	34862368	.	+	.	Parent=Os04t0682850-00
Chr04	irgsp1_rep	five_prime_UTR	34862920	34862954	.	+	.	Parent=Os04t0682850-00
Chr04	irgsp1_rep	five_prime_UTR	34863041	34863102	.	+	.	Parent=Os04t0682850-00
Chr04	irgsp1_rep	five_prime_UTR	34863314	34863480	.	+	.	Parent=Os04t0682850-00
Chr04	irgsp1_rep	five_prime_UTR	34863583	34863779	.	+	.	Parent=Os04t0682850-00
Chr04	irgsp1_rep	five_prime_UTR	34864260	34864403	.	+	.	Parent=Os04t0682850-00
Chr04	irgsp1_rep	five_prime_UTR	34864494	34864585	.	+	.	Parent=Os04t0682850-00
Chr04	irgsp1_rep	five_prime_UTR	34864801	34864885	.	+	.	Parent=Os04t0682850-00
Chr04	irgsp1_rep	five_prime_UTR	34865491	34865574	.	+	.	Parent=Os04t0682850-00
Chr04	irgsp1_rep	five_prime_UTR	34865927	34865974	.	+	.	Parent=Os04t0682850-00
Chr04	irgsp1_rep	five_prime_UTR	34866208	34866332	.	+	.	Parent=Os04t0682850-00
Chr04	irgsp1_rep	five_prime_UTR	34866412	34866472	.	+	.	Parent=Os04t0682850-00
Chr04	irgsp1_rep	five_prime_UTR	34866550	34866678	.	+	.	Parent=Os04t0682850-00
Chr04	irgsp1_rep	five_prime_UTR	34866931	34867020	.	+	.	Parent=Os04t0682850-00
Chr04	irgsp1_rep	five_prime_UTR	34867158	34867325	.	+	.	Parent=Os04t0682850-00
Chr04	irgsp1_rep	five_prime_UTR	34867562	34868060	.	+	.	Parent=Os04t0682850-00
Chr04	irgsp1_rep	CDS	34868061	34868537	.	+	0	Parent=Os04t0682850-00
Chr04	irgsp1_rep	three_prime_UTR	34868538	34869026	.	+	.	Parent=Os04t0682850-00
Chr04	irgsp1_rep	mRNA	34870064	34877172	.	-	.	ID=Os04t0682900-01;Name=Os04t0682900-01;Locus_id=Os04g0682900;Oryzabase Gene Symbol Synonym(s)=MSH3;Oryzabase Gene Name Synonym(s)=DNA mismatch repair protein MSH3;Note=Similar to H0124B04.17 protein.;Transcript_evidence=AK065300 (DDBJ%2C Best hit);ORF_evidence=Q259F9 (UniProt);GO=Biological Process: mismatch repair (GO:0006298),Molecular Function: ATP binding (GO:0005524),Molecular Function: mismatched DNA binding (GO:0030983);InterPro=DNA mismatch repair protein MutS-like%2C N-terminal (IPR007695),DNA mismatch repair protein MutS%2C core (IPR007696),DNA mismatch repair protein MutS%2C connector (IPR007860),DNA mismatch repair protein MutS%2C clamp (IPR007861),DNA mismatch repair protein MutS%2C N-terminal (IPR016151);NIAS_FLcDNA=J013002N18;Oryzabase=20433;TENOR=Os04t0682900-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34877171	34877172	.	-	.	Parent=Os04t0682900-01
Chr04	irgsp1_rep	CDS	34876130	34877170	.	-	0	Parent=Os04t0682900-01
Chr04	irgsp1_rep	CDS	34875518	34875712	.	-	0	Parent=Os04t0682900-01
Chr04	irgsp1_rep	CDS	34875248	34875412	.	-	0	Parent=Os04t0682900-01
Chr04	irgsp1_rep	CDS	34874853	34874951	.	-	0	Parent=Os04t0682900-01
Chr04	irgsp1_rep	CDS	34874465	34874716	.	-	0	Parent=Os04t0682900-01
Chr04	irgsp1_rep	CDS	34873608	34873859	.	-	0	Parent=Os04t0682900-01
Chr04	irgsp1_rep	CDS	34873290	34873421	.	-	0	Parent=Os04t0682900-01
Chr04	irgsp1_rep	CDS	34872869	34873129	.	-	0	Parent=Os04t0682900-01
Chr04	irgsp1_rep	CDS	34872703	34872774	.	-	0	Parent=Os04t0682900-01
Chr04	irgsp1_rep	CDS	34872042	34872152	.	-	0	Parent=Os04t0682900-01
Chr04	irgsp1_rep	three_prime_UTR	34871859	34872041	.	-	.	Parent=Os04t0682900-01
Chr04	irgsp1_rep	three_prime_UTR	34871185	34871682	.	-	.	Parent=Os04t0682900-01
Chr04	irgsp1_rep	three_prime_UTR	34870461	34870803	.	-	.	Parent=Os04t0682900-01
Chr04	irgsp1_rep	three_prime_UTR	34870064	34870372	.	-	.	Parent=Os04t0682900-01
Chr04	irgsp1_rep	mRNA	34877821	34881555	.	-	.	ID=Os04t0683100-01;Name=Os04t0683100-01;Locus_id=Os04g0683100;Note=Similar to Cleavage and polyadenylation specificity factor 5.;Transcript_evidence=AK064962 (DDBJ%2C Best hit);ORF_evidence=B6T6P2 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=NUDIX hydrolase domain (IPR000086),Cleavage/polyadenylation specificity factor%2C 25kDa subunit (IPR016706);NIAS_FLcDNA=J013001A17;TENOR=Os04t0683100-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34881385	34881555	.	-	.	Parent=Os04t0683100-01
Chr04	irgsp1_rep	CDS	34881260	34881384	.	-	0	Parent=Os04t0683100-01
Chr04	irgsp1_rep	CDS	34880507	34880552	.	-	1	Parent=Os04t0683100-01
Chr04	irgsp1_rep	CDS	34880260	34880353	.	-	0	Parent=Os04t0683100-01
Chr04	irgsp1_rep	CDS	34880090	34880163	.	-	2	Parent=Os04t0683100-01
Chr04	irgsp1_rep	CDS	34879311	34879397	.	-	0	Parent=Os04t0683100-01
Chr04	irgsp1_rep	CDS	34878918	34879028	.	-	0	Parent=Os04t0683100-01
Chr04	irgsp1_rep	CDS	34878249	34878320	.	-	0	Parent=Os04t0683100-01
Chr04	irgsp1_rep	three_prime_UTR	34877821	34878248	.	-	.	Parent=Os04t0683100-01
Chr04	irgsp1_rep	mRNA	34877803	34881343	.	-	.	ID=Os04t0683100-02;Name=Os04t0683100-02;Locus_id=Os04g0683100;Note=Similar to Cleavage and polyadenylation specificity factor 5.;Transcript_evidence=AK060155 (DDBJ%2C Best hit),AK104757 (DDBJ%2C Best hit);ORF_evidence=B6T6P2 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=NUDIX hydrolase domain (IPR000086),Cleavage/polyadenylation specificity factor%2C 25kDa subunit (IPR016706);NIAS_FLcDNA=006-310-F03,001-038-G07;TENOR=Os04t0683100-02
Chr04	irgsp1_rep	five_prime_UTR	34881343	34881343	.	-	.	Parent=Os04t0683100-02
Chr04	irgsp1_rep	CDS	34881260	34881342	.	-	0	Parent=Os04t0683100-02
Chr04	irgsp1_rep	CDS	34880507	34880552	.	-	1	Parent=Os04t0683100-02
Chr04	irgsp1_rep	CDS	34880260	34880353	.	-	0	Parent=Os04t0683100-02
Chr04	irgsp1_rep	CDS	34880090	34880163	.	-	2	Parent=Os04t0683100-02
Chr04	irgsp1_rep	CDS	34879311	34879397	.	-	0	Parent=Os04t0683100-02
Chr04	irgsp1_rep	CDS	34878918	34879028	.	-	0	Parent=Os04t0683100-02
Chr04	irgsp1_rep	CDS	34878249	34878320	.	-	0	Parent=Os04t0683100-02
Chr04	irgsp1_rep	three_prime_UTR	34877803	34878248	.	-	.	Parent=Os04t0683100-02
Chr04	irgsp1_rep	mRNA	34891819	34892196	.	-	.	ID=Os04t0683400-00;Name=Os04t0683400-00;Locus_id=Os04g0683400;CGSNL Gene Symbol=HAP5G;CGSNL Gene Name=HAP5G SUBUNIT OF CCAAT-BOX BINDING COMPLEX;Oryzabase Gene Symbol Synonym(s)=OsHAP5G%2C NF-YC%2C CBF-C%2C OsNF-YC3%2C Os-NF-YC3%2C NF-YC3%2C NFYC3;Oryzabase Gene Name Synonym(s)=Nuclear factor Y C3 subunit%2C Nuclear factor Y C subunit 3%2C NUCLEAR FACTOR-Y subunit C3%2C NUCLEAR FACTOR-Y subunit NF-YC3%2C NF-YC subunit 3%2C NF-YC family 3;Note=Similar to H0306F12.4 protein.;Transcript_evidence=EU958236 (DDBJ);ORF_evidence=Q259Q7 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Transcription factor CBF/NF-Y/archaeal histone (IPR003958),Histone-fold (IPR009072);Oryzabase=8497;TENOR=Os04t0683400-00;KEGG=Os04t0683400-00
Chr04	irgsp1_rep	CDS	34891819	34892196	.	-	0	Parent=Os04t0683400-00
Chr04	irgsp1_rep	mRNA	34892965	34895813	.	+	.	ID=Os04t0683500-01;Name=Os04t0683500-01;Locus_id=Os04g0683500;Note=Similar to H0306F12.5 protein.;Transcript_evidence=AK071538 (DDBJ%2C Best hit);ORF_evidence=Q259R1 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Molecular Function: RNA binding (GO:0003723),Molecular Function: adenosine deaminase activity (GO:0004000);InterPro=Adenosine deaminase/editase (IPR002466);NIAS_FLcDNA=J023099G11;Expression=AK071538;TENOR=Os04t0683500-01;KEGG=Os04t0683500-01
Chr04	irgsp1_rep	five_prime_UTR	34892965	34893002	.	+	.	Parent=Os04t0683500-01
Chr04	irgsp1_rep	CDS	34893003	34893375	.	+	0	Parent=Os04t0683500-01
Chr04	irgsp1_rep	CDS	34893564	34893638	.	+	2	Parent=Os04t0683500-01
Chr04	irgsp1_rep	CDS	34894249	34894347	.	+	2	Parent=Os04t0683500-01
Chr04	irgsp1_rep	CDS	34894600	34894772	.	+	2	Parent=Os04t0683500-01
Chr04	irgsp1_rep	CDS	34894854	34894930	.	+	0	Parent=Os04t0683500-01
Chr04	irgsp1_rep	CDS	34895046	34895165	.	+	1	Parent=Os04t0683500-01
Chr04	irgsp1_rep	CDS	34895249	34895336	.	+	1	Parent=Os04t0683500-01
Chr04	irgsp1_rep	CDS	34895474	34895584	.	+	0	Parent=Os04t0683500-01
Chr04	irgsp1_rep	three_prime_UTR	34895585	34895813	.	+	.	Parent=Os04t0683500-01
Chr04	irgsp1_rep	mRNA	34892967	34898794	.	+	.	ID=Os04t0683500-02;Name=Os04t0683500-02;Locus_id=Os04g0683500;Note=Similar to Adenosine deaminase acting on tRNA 1.;Transcript_evidence=AK106642 (DDBJ%2C Best hit);ORF_evidence=Q259R1 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Molecular Function: RNA binding (GO:0003723),Molecular Function: adenosine deaminase activity (GO:0004000);InterPro=Adenosine deaminase/editase (IPR002466);NIAS_FLcDNA=002-113-E06;Expression=AK106642;TENOR=Os04t0683500-02;KEGG=Os04t0683500-02
Chr04	irgsp1_rep	five_prime_UTR	34892967	34893002	.	+	.	Parent=Os04t0683500-02
Chr04	irgsp1_rep	CDS	34893003	34893435	.	+	0	Parent=Os04t0683500-02
Chr04	irgsp1_rep	CDS	34893564	34893638	.	+	2	Parent=Os04t0683500-02
Chr04	irgsp1_rep	CDS	34894249	34894347	.	+	2	Parent=Os04t0683500-02
Chr04	irgsp1_rep	CDS	34894600	34894772	.	+	2	Parent=Os04t0683500-02
Chr04	irgsp1_rep	CDS	34894854	34894934	.	+	0	Parent=Os04t0683500-02
Chr04	irgsp1_rep	three_prime_UTR	34894935	34895165	.	+	.	Parent=Os04t0683500-02
Chr04	irgsp1_rep	three_prime_UTR	34895249	34895336	.	+	.	Parent=Os04t0683500-02
Chr04	irgsp1_rep	three_prime_UTR	34895474	34895580	.	+	.	Parent=Os04t0683500-02
Chr04	irgsp1_rep	three_prime_UTR	34897904	34898794	.	+	.	Parent=Os04t0683500-02
Chr04	irgsp1_rep	mRNA	34892984	34895836	.	+	.	ID=Os04t0683500-03;Name=Os04t0683500-03;Locus_id=Os04g0683500;Note=Similar to H0306F12.5 protein.;Transcript_evidence=AK105871 (DDBJ%2C Best hit);ORF_evidence=Q259R1 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Molecular Function: RNA binding (GO:0003723),Molecular Function: adenosine deaminase activity (GO:0004000);InterPro=Adenosine deaminase/editase (IPR002466);NIAS_FLcDNA=001-204-B01;TENOR=Os04t0683500-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34892984	34893433	.	+	.	Parent=Os04t0683500-03
Chr04	irgsp1_rep	CDS	34893434	34893638	.	+	0	Parent=Os04t0683500-03
Chr04	irgsp1_rep	CDS	34894249	34894347	.	+	2	Parent=Os04t0683500-03
Chr04	irgsp1_rep	CDS	34894600	34894817	.	+	2	Parent=Os04t0683500-03
Chr04	irgsp1_rep	three_prime_UTR	34894818	34894940	.	+	.	Parent=Os04t0683500-03
Chr04	irgsp1_rep	three_prime_UTR	34895046	34895165	.	+	.	Parent=Os04t0683500-03
Chr04	irgsp1_rep	three_prime_UTR	34895249	34895336	.	+	.	Parent=Os04t0683500-03
Chr04	irgsp1_rep	three_prime_UTR	34895474	34895836	.	+	.	Parent=Os04t0683500-03
Chr04	irgsp1_rep	mRNA	34901628	34907296	.	+	.	ID=Os04t0683600-01;Name=Os04t0683600-01;Locus_id=Os04g0683600;Note=Similar to H0306F12.6 protein.;Transcript_evidence=AK065557 (DDBJ%2C Best hit);ORF_evidence=Q259R0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J013030D07;TENOR=Os04t0683600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34901628	34901950	.	+	.	Parent=Os04t0683600-01
Chr04	irgsp1_rep	CDS	34901951	34902062	.	+	0	Parent=Os04t0683600-01
Chr04	irgsp1_rep	CDS	34902516	34902654	.	+	2	Parent=Os04t0683600-01
Chr04	irgsp1_rep	CDS	34903127	34903198	.	+	1	Parent=Os04t0683600-01
Chr04	irgsp1_rep	CDS	34903278	34903421	.	+	1	Parent=Os04t0683600-01
Chr04	irgsp1_rep	CDS	34903520	34903669	.	+	1	Parent=Os04t0683600-01
Chr04	irgsp1_rep	CDS	34904342	34904449	.	+	1	Parent=Os04t0683600-01
Chr04	irgsp1_rep	CDS	34904514	34904584	.	+	1	Parent=Os04t0683600-01
Chr04	irgsp1_rep	CDS	34905161	34905409	.	+	2	Parent=Os04t0683600-01
Chr04	irgsp1_rep	CDS	34905482	34905687	.	+	2	Parent=Os04t0683600-01
Chr04	irgsp1_rep	CDS	34905817	34905825	.	+	0	Parent=Os04t0683600-01
Chr04	irgsp1_rep	three_prime_UTR	34905826	34905890	.	+	.	Parent=Os04t0683600-01
Chr04	irgsp1_rep	three_prime_UTR	34906000	34906157	.	+	.	Parent=Os04t0683600-01
Chr04	irgsp1_rep	three_prime_UTR	34906284	34906505	.	+	.	Parent=Os04t0683600-01
Chr04	irgsp1_rep	three_prime_UTR	34906733	34907296	.	+	.	Parent=Os04t0683600-01
Chr04	irgsp1_rep	mRNA	34906422	34907175	.	+	.	ID=Os04t0683600-02;Name=Os04t0683600-02;Locus_id=Os04g0683600;Note=Similar to H0306F12.6 protein.;Transcript_evidence=AK062055 (DDBJ%2C Best hit);ORF_evidence=Q259R0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-044-C03;Expression=AK062055;TENOR=Os04t0683600-02;KEGG=Os04t0683600-02
Chr04	irgsp1_rep	CDS	34906422	34906505	.	+	0	Parent=Os04t0683600-02
Chr04	irgsp1_rep	CDS	34906733	34906978	.	+	0	Parent=Os04t0683600-02
Chr04	irgsp1_rep	three_prime_UTR	34906979	34907175	.	+	.	Parent=Os04t0683600-02
Chr04	irgsp1_rep	mRNA	34908578	34910477	.	-	.	ID=Os04t0683700-01;Name=Os04t0683700-01;Locus_id=Os04g0683700;RAP-DB Gene Symbol Synonym(s)=OsAAE3;RAP-DB Gene Name Synonym(s)=Acyl-Activating Enzyme 3%2C adenosine monophosphate binding protein 3;Oryzabase Gene Symbol Synonym(s)=OsAAE3%2C AAE3%2C OsOCS%2C OCS%2C 4CL;Oryzabase Gene Name Synonym(s)=Acyl-Activating Enzyme 3%2C adenosine monophosphate binding protein 3%2C acyl activation enzyme 3%2C oxalyl-CoA synthetase;Note=4-coumarate-Co-A ligase (4CL) like protein%2C Adenosine monophosphate binding protein%2C Regulation of rice blast resistance%2C floret development%2C and lignin biosynthesis;Transcript_evidence=AK119512;ORF_evidence=Q7XPV4;GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873),AMP-binding enzyme%2C C-terminal domain (IPR025110),AMP-binding%2C conserved site (IPR020845);NIAS_FLcDNA=001-200-E01;Manual Curation=June 13%2C 2017;Literature_PMID=28119718;Oryzabase=12369;Expression=AK119512;TENOR=Os04t0683700-01;KEGG=Os04t0683700-01;Subcellular location=cytosol (GO:0005829)
Chr04	irgsp1_rep	five_prime_UTR	34910389	34910477	.	-	.	Parent=Os04t0683700-01
Chr04	irgsp1_rep	CDS	34910185	34910388	.	-	0	Parent=Os04t0683700-01
Chr04	irgsp1_rep	CDS	34908745	34910097	.	-	0	Parent=Os04t0683700-01
Chr04	irgsp1_rep	three_prime_UTR	34908578	34908744	.	-	.	Parent=Os04t0683700-01
Chr04	irgsp1_rep	mRNA	34915815	34919982	.	+	.	ID=Os04t0683800-01;Name=Os04t0683800-01;Locus_id=Os04g0683800;Note=Similar to Phosphoribosyltransferase (Fragment).;Transcript_evidence=AK073897 (DDBJ%2C Best hit),AK102910 (DDBJ%2C Best hit);ORF_evidence=B9FDD7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),Phosphoribosyltransferase C-terminal (IPR013583),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=J033075A06,J033113J04;TENOR=Os04t0683800-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34915815	34916231	.	+	.	Parent=Os04t0683800-01
Chr04	irgsp1_rep	five_prime_UTR	34916671	34916704	.	+	.	Parent=Os04t0683800-01
Chr04	irgsp1_rep	CDS	34916705	34919740	.	+	0	Parent=Os04t0683800-01
Chr04	irgsp1_rep	three_prime_UTR	34919741	34919982	.	+	.	Parent=Os04t0683800-01
Chr04	irgsp1_rep	mRNA	34920628	34922213	.	+	.	ID=Os04t0683850-00;Name=Os04t0683850-00;Locus_id=Os04g0683850;Note=Similar to Glutathione peroxidase.;Transcript_evidence=AK249946 (DDBJ);ORF_evidence=C5YAP1 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: glutathione peroxidase activity (GO:0004602);InterPro=Glutathione peroxidase (IPR000889),Thioredoxin-like fold (IPR012336);TENOR=Os04t0683850-00;KEGG=Os04t0683850-00 (EC:1.11.1.12)
Chr04	irgsp1_rep	five_prime_UTR	34920628	34920642	.	+	.	Parent=Os04t0683850-00
Chr04	irgsp1_rep	CDS	34920643	34920702	.	+	0	Parent=Os04t0683850-00
Chr04	irgsp1_rep	CDS	34920965	34921041	.	+	0	Parent=Os04t0683850-00
Chr04	irgsp1_rep	CDS	34921122	34921183	.	+	1	Parent=Os04t0683850-00
Chr04	irgsp1_rep	CDS	34921577	34921703	.	+	2	Parent=Os04t0683850-00
Chr04	irgsp1_rep	CDS	34921806	34921815	.	+	1	Parent=Os04t0683850-00
Chr04	irgsp1_rep	three_prime_UTR	34921816	34921973	.	+	.	Parent=Os04t0683850-00
Chr04	irgsp1_rep	three_prime_UTR	34922060	34922213	.	+	.	Parent=Os04t0683850-00
Chr04	irgsp1_rep	mRNA	34920963	34921973	.	-	.	ID=Os04t0683875-00;Name=Os04t0683875-00;Locus_id=Os04g0683875;Note=Non-protein coding transcript.;Transcript_evidence=AF366451 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0683875-00
Chr04	irgsp1_rep	exon	34921804	34921973	.	-	.	Parent=Os04t0683875-00
Chr04	irgsp1_rep	exon	34921628	34921694	.	-	.	Parent=Os04t0683875-00
Chr04	irgsp1_rep	exon	34920963	34921144	.	-	.	Parent=Os04t0683875-00
Chr04	irgsp1_rep	mRNA	34922338	34926223	.	-	.	ID=Os04t0683900-01;Name=Os04t0683900-01;Locus_id=Os04g0683900;Note=Protein of unknown function DUF296 domain containing protein.;Transcript_evidence=AK099749 (DDBJ%2C Best hit);ORF_evidence=Q259R4 (UniProt);InterPro=Domain of unknown function DUF296 (IPR005175);NIAS_FLcDNA=J013091P17;Expression=AK099749;TENOR=Os04t0683900-01;KEGG=Os04t0683900-01
Chr04	irgsp1_rep	five_prime_UTR	34924745	34926223	.	-	.	Parent=Os04t0683900-01
Chr04	irgsp1_rep	CDS	34924129	34924744	.	-	0	Parent=Os04t0683900-01
Chr04	irgsp1_rep	CDS	34923683	34923753	.	-	2	Parent=Os04t0683900-01
Chr04	irgsp1_rep	CDS	34923386	34923550	.	-	0	Parent=Os04t0683900-01
Chr04	irgsp1_rep	CDS	34923135	34923284	.	-	0	Parent=Os04t0683900-01
Chr04	irgsp1_rep	CDS	34922490	34922747	.	-	0	Parent=Os04t0683900-01
Chr04	irgsp1_rep	three_prime_UTR	34922338	34922489	.	-	.	Parent=Os04t0683900-01
Chr04	irgsp1_rep	mRNA	34922245	34925107	.	-	.	ID=Os04t0683900-02;Name=Os04t0683900-02;Locus_id=Os04g0683900;Note=Protein of unknown function DUF296 domain containing protein.;Transcript_evidence=AK100309 (DDBJ%2C Best hit);ORF_evidence=Q259R4 (UniProt);InterPro=Domain of unknown function DUF296 (IPR005175);NIAS_FLcDNA=J023078J11;TENOR=Os04t0683900-02
Chr04	irgsp1_rep	five_prime_UTR	34924745	34925107	.	-	.	Parent=Os04t0683900-02
Chr04	irgsp1_rep	CDS	34924129	34924744	.	-	0	Parent=Os04t0683900-02
Chr04	irgsp1_rep	CDS	34923683	34923753	.	-	2	Parent=Os04t0683900-02
Chr04	irgsp1_rep	CDS	34923386	34923550	.	-	0	Parent=Os04t0683900-02
Chr04	irgsp1_rep	CDS	34923135	34923284	.	-	0	Parent=Os04t0683900-02
Chr04	irgsp1_rep	CDS	34922490	34922747	.	-	0	Parent=Os04t0683900-02
Chr04	irgsp1_rep	three_prime_UTR	34922245	34922489	.	-	.	Parent=Os04t0683900-02
Chr04	irgsp1_rep	mRNA	34922259	34924938	.	-	.	ID=Os04t0683900-03;Name=Os04t0683900-03;Locus_id=Os04g0683900;Note=Protein of unknown function DUF296 domain containing protein.;Transcript_evidence=AK060880 (DDBJ%2C Best hit);ORF_evidence=Q259R4 (UniProt);InterPro=Domain of unknown function DUF296 (IPR005175);NIAS_FLcDNA=001-035-A09;TENOR=Os04t0683900-03
Chr04	irgsp1_rep	five_prime_UTR	34924745	34924938	.	-	.	Parent=Os04t0683900-03
Chr04	irgsp1_rep	CDS	34924129	34924744	.	-	0	Parent=Os04t0683900-03
Chr04	irgsp1_rep	CDS	34923683	34923753	.	-	2	Parent=Os04t0683900-03
Chr04	irgsp1_rep	CDS	34923386	34923550	.	-	0	Parent=Os04t0683900-03
Chr04	irgsp1_rep	CDS	34923135	34923284	.	-	0	Parent=Os04t0683900-03
Chr04	irgsp1_rep	CDS	34922490	34922747	.	-	0	Parent=Os04t0683900-03
Chr04	irgsp1_rep	three_prime_UTR	34922259	34922489	.	-	.	Parent=Os04t0683900-03
Chr04	irgsp1_rep	mRNA	34923384	34923751	.	+	.	ID=Os04t0683950-00;Name=Os04t0683950-00;Locus_id=Os04g0683950;Note=Non-protein coding transcript.;Transcript_evidence=EU948418 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0683950-00
Chr04	irgsp1_rep	exon	34923384	34923751	.	+	.	Parent=Os04t0683950-00
Chr04	irgsp1_rep	mRNA	34924131	34925927	.	+	.	ID=Os04t0684000-01;Name=Os04t0684000-01;Locus_id=Os04g0684000;Note=Hypothetical protein.;Transcript_evidence=AK102578 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033097P11;Expression=AK102578;TENOR=Os04t0684000-01;KEGG=Os04t0684000-01
Chr04	irgsp1_rep	five_prime_UTR	34924131	34924235	.	+	.	Parent=Os04t0684000-01
Chr04	irgsp1_rep	CDS	34924236	34924664	.	+	0	Parent=Os04t0684000-01
Chr04	irgsp1_rep	three_prime_UTR	34924665	34925927	.	+	.	Parent=Os04t0684000-01
Chr04	irgsp1_rep	mRNA	34930178	34932191	.	-	.	ID=Os04t0684100-01;Name=Os04t0684100-01;Locus_id=Os04g0684100;Note=Hypothetical conserved gene.;Transcript_evidence=AK060126 (DDBJ%2C Best hit);ORF_evidence=B9FDD9 (UniProt);NIAS_FLcDNA=006-308-H11;Expression=AK060126;TENOR=Os04t0684100-01;KEGG=Os04t0684100-01
Chr04	irgsp1_rep	five_prime_UTR	34931734	34932191	.	-	.	Parent=Os04t0684100-01
Chr04	irgsp1_rep	CDS	34931727	34931733	.	-	0	Parent=Os04t0684100-01
Chr04	irgsp1_rep	CDS	34930554	34930717	.	-	2	Parent=Os04t0684100-01
Chr04	irgsp1_rep	three_prime_UTR	34930178	34930553	.	-	.	Parent=Os04t0684100-01
Chr04	irgsp1_rep	mRNA	34930170	34932188	.	-	.	ID=Os04t0684100-02;Name=Os04t0684100-02;Locus_id=Os04g0684100;Note=Hypothetical conserved gene.;Transcript_evidence=AK066367 (DDBJ%2C Best hit);ORF_evidence=B9FDD9 (UniProt);NIAS_FLcDNA=J013063P07;Expression=AK066367;TENOR=Os04t0684100-02;KEGG=Os04t0684100-02
Chr04	irgsp1_rep	five_prime_UTR	34930749	34932188	.	-	.	Parent=Os04t0684100-02
Chr04	irgsp1_rep	CDS	34930554	34930748	.	-	0	Parent=Os04t0684100-02
Chr04	irgsp1_rep	three_prime_UTR	34930170	34930553	.	-	.	Parent=Os04t0684100-02
Chr04	irgsp1_rep	mRNA	34943036	34949637	.	+	.	ID=Os04t0684200-01;Name=Os04t0684200-01;Locus_id=Os04g0684200;CGSNL Gene Symbol=RLCK173;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 173;Oryzabase Gene Symbol Synonym(s)=OsRLCK173%2C OsBSK3%2C BSK3;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 173%2C BR-signaling kinase 3%2C brassinosteroid-signaling kinase 3%2C brassinosteroid-SIGNALING KINASE 3;Note=Brassinosteroid (BR) signaling kinase%2C Regulation of BR signaling;Transcript_evidence=AK101506;ORF_evidence=B9FDE0;InterPro=Concanavalin A-like lectin/glucanase domain (IPR013320);NIAS_FLcDNA=J033044N06;Manual Curation=January 18%2C 2016;Literature_PMID=26697897,19825577;Oryzabase=18876;TENOR=Os04t0684200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34943036	34943361	.	+	.	Parent=Os04t0684200-01
Chr04	irgsp1_rep	CDS	34943362	34943449	.	+	0	Parent=Os04t0684200-01
Chr04	irgsp1_rep	CDS	34943913	34944133	.	+	2	Parent=Os04t0684200-01
Chr04	irgsp1_rep	CDS	34944934	34944975	.	+	0	Parent=Os04t0684200-01
Chr04	irgsp1_rep	three_prime_UTR	34944976	34945067	.	+	.	Parent=Os04t0684200-01
Chr04	irgsp1_rep	three_prime_UTR	34945517	34945650	.	+	.	Parent=Os04t0684200-01
Chr04	irgsp1_rep	three_prime_UTR	34945730	34945835	.	+	.	Parent=Os04t0684200-01
Chr04	irgsp1_rep	three_prime_UTR	34946313	34946398	.	+	.	Parent=Os04t0684200-01
Chr04	irgsp1_rep	three_prime_UTR	34946824	34947012	.	+	.	Parent=Os04t0684200-01
Chr04	irgsp1_rep	three_prime_UTR	34947339	34947503	.	+	.	Parent=Os04t0684200-01
Chr04	irgsp1_rep	three_prime_UTR	34948097	34948210	.	+	.	Parent=Os04t0684200-01
Chr04	irgsp1_rep	three_prime_UTR	34948467	34948758	.	+	.	Parent=Os04t0684200-01
Chr04	irgsp1_rep	three_prime_UTR	34949171	34949637	.	+	.	Parent=Os04t0684200-01
Chr04	irgsp1_rep	mRNA	34950471	34951726	.	+	.	ID=Os04t0684300-01;Name=Os04t0684300-01;Locus_id=Os04g0684300;CGSNL Gene Symbol=CASP1;CGSNL Gene Name=CASPARIAN STRIP DOMAIN PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsCASP1;Oryzabase Gene Name Synonym(s)=Casparian strip domain protein 1;Note=Non-protein coding transcript.;Transcript_evidence=AK105205 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-108-G03;Oryzabase=23335;TENOR=Os04t0684300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	exon	34950471	34950564	.	+	.	Parent=Os04t0684300-01
Chr04	irgsp1_rep	exon	34951229	34951726	.	+	.	Parent=Os04t0684300-01
Chr04	irgsp1_rep	mRNA	34950466	34951726	.	+	.	ID=Os04t0684300-02;Name=Os04t0684300-02;Locus_id=Os04g0684300;RAP-DB Gene Symbol Synonym(s)=OsCASP1;RAP-DB Gene Name Synonym(s)=Casparian strip domain protein 1;CGSNL Gene Symbol=CASP1;CGSNL Gene Name=CASPARIAN STRIP DOMAIN PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsCASP1;Oryzabase Gene Name Synonym(s)=Casparian strip domain protein 1;Note=Casparian strip domain protein%2C Casparian strip (CS) formation at the endodermal cells in root%2C Root selective uptake of mineral elements;Transcript_evidence=Inferred from literature;ORF_evidence=Q7XPU9;InterPro=Casparian strip membrane protein (IPR006459),Casparian strip membrane protein domain (IPR006702);Manual Curation=September 10%2C 2019;Literature_PMID=31484684;Oryzabase=23335;Subcellular location=plasma membrane (GO:0005886)
Chr04	irgsp1_rep	five_prime_UTR	34950466	34950556	.	+	.	Parent=Os04t0684300-02
Chr04	irgsp1_rep	CDS	34950557	34950891	.	+	0	Parent=Os04t0684300-02
Chr04	irgsp1_rep	CDS	34950997	34951120	.	+	1	Parent=Os04t0684300-02
Chr04	irgsp1_rep	CDS	34951210	34951425	.	+	0	Parent=Os04t0684300-02
Chr04	irgsp1_rep	three_prime_UTR	34951426	34951726	.	+	.	Parent=Os04t0684300-02
Chr04	irgsp1_rep	mRNA	34958612	34970010	.	+	.	ID=Os04t0684500-01;Name=Os04t0684500-01;Locus_id=Os04g0684500;RAP-DB Gene Symbol Synonym(s)=WSL5;RAP-DB Gene Name Synonym(s)=white stripe leaf 5;CGSNL Gene Symbol=WSL5;CGSNL Gene Name=WHITE STRIPE LEAF 5;Oryzabase Gene Symbol Synonym(s)=OsWSL5;Oryzabase Gene Name Synonym(s)=white stripe leaf 5;Note=Pentatricopeptide repeat protein%2C Chloroplast development under cold stress;Transcript_evidence=AK066014;ORF_evidence=Q0J8W3;GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515);InterPro=Nucleotide-binding alpha-beta plait domain superfamily (IPR012677),RNA-binding domain superfamily (IPR035979),Tetratricopeptide-like helical domain superfamily (IPR011990),RNA recognition motif domain (IPR000504),Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J013049M21;Manual Curation=September 25%2C 2018;Literature_PMID=29893948;Oryzabase=22583;Expression=AK066014;TENOR=Os04t0684500-01;KEGG=Os04t0684500-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.;Subcellular location=chloroplast (GO:0009507)
Chr04	irgsp1_rep	five_prime_UTR	34958612	34958668	.	+	.	Parent=Os04t0684500-01
Chr04	irgsp1_rep	CDS	34958669	34959451	.	+	0	Parent=Os04t0684500-01
Chr04	irgsp1_rep	CDS	34960384	34960511	.	+	0	Parent=Os04t0684500-01
Chr04	irgsp1_rep	CDS	34960958	34961098	.	+	1	Parent=Os04t0684500-01
Chr04	irgsp1_rep	CDS	34961319	34961405	.	+	1	Parent=Os04t0684500-01
Chr04	irgsp1_rep	CDS	34961490	34961643	.	+	1	Parent=Os04t0684500-01
Chr04	irgsp1_rep	CDS	34963432	34963491	.	+	0	Parent=Os04t0684500-01
Chr04	irgsp1_rep	CDS	34963882	34964310	.	+	0	Parent=Os04t0684500-01
Chr04	irgsp1_rep	CDS	34964387	34964682	.	+	0	Parent=Os04t0684500-01
Chr04	irgsp1_rep	CDS	34965141	34965270	.	+	1	Parent=Os04t0684500-01
Chr04	irgsp1_rep	CDS	34965553	34966050	.	+	0	Parent=Os04t0684500-01
Chr04	irgsp1_rep	three_prime_UTR	34966051	34966137	.	+	.	Parent=Os04t0684500-01
Chr04	irgsp1_rep	three_prime_UTR	34966320	34966553	.	+	.	Parent=Os04t0684500-01
Chr04	irgsp1_rep	three_prime_UTR	34969678	34970010	.	+	.	Parent=Os04t0684500-01
Chr04	irgsp1_rep	mRNA	34958629	34971379	.	+	.	ID=Os04t0684500-02;Name=Os04t0684500-02;Locus_id=Os04g0684500;CGSNL Gene Symbol=WSL5;CGSNL Gene Name=WHITE STRIPE LEAF 5;Oryzabase Gene Symbol Synonym(s)=OsWSL5;Oryzabase Gene Name Synonym(s)=white stripe leaf 5;Note=Hypothetical conserved gene.;Transcript_evidence=AK289251 (DDBJ%2C Best hit);ORF_evidence=NP_001054310.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: binding (GO:0005488);InterPro=RNA recognition motif domain (IPR000504),Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J100081E23;Oryzabase=22583;TENOR=Os04t0684500-02;KEGG=Os04t0684500-02;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	34958629	34958668	.	+	.	Parent=Os04t0684500-02
Chr04	irgsp1_rep	CDS	34958669	34959451	.	+	0	Parent=Os04t0684500-02
Chr04	irgsp1_rep	CDS	34960384	34960511	.	+	0	Parent=Os04t0684500-02
Chr04	irgsp1_rep	CDS	34960958	34961098	.	+	1	Parent=Os04t0684500-02
Chr04	irgsp1_rep	CDS	34961319	34961405	.	+	1	Parent=Os04t0684500-02
Chr04	irgsp1_rep	CDS	34961490	34961643	.	+	1	Parent=Os04t0684500-02
Chr04	irgsp1_rep	CDS	34963432	34963491	.	+	0	Parent=Os04t0684500-02
Chr04	irgsp1_rep	CDS	34963882	34964412	.	+	0	Parent=Os04t0684500-02
Chr04	irgsp1_rep	three_prime_UTR	34964413	34964682	.	+	.	Parent=Os04t0684500-02
Chr04	irgsp1_rep	three_prime_UTR	34965141	34965270	.	+	.	Parent=Os04t0684500-02
Chr04	irgsp1_rep	three_prime_UTR	34965553	34966137	.	+	.	Parent=Os04t0684500-02
Chr04	irgsp1_rep	three_prime_UTR	34966320	34966553	.	+	.	Parent=Os04t0684500-02
Chr04	irgsp1_rep	three_prime_UTR	34969678	34969807	.	+	.	Parent=Os04t0684500-02
Chr04	irgsp1_rep	three_prime_UTR	34970805	34971379	.	+	.	Parent=Os04t0684500-02
Chr04	irgsp1_rep	mRNA	34972015	34972557	.	+	.	ID=Os04t0684600-01;Name=Os04t0684600-01;Locus_id=Os04g0684600;Note=Similar to H0913C04.5 protein.;Transcript_evidence=AK111337 (DDBJ%2C Best hit);ORF_evidence=Q259T9 (UniProt);NIAS_FLcDNA=002-181-F04;Expression=AK111337;TENOR=Os04t0684600-01;KEGG=Os04t0684600-01
Chr04	irgsp1_rep	five_prime_UTR	34972015	34972047	.	+	.	Parent=Os04t0684600-01
Chr04	irgsp1_rep	CDS	34972048	34972293	.	+	0	Parent=Os04t0684600-01
Chr04	irgsp1_rep	three_prime_UTR	34972294	34972557	.	+	.	Parent=Os04t0684600-01
Chr04	irgsp1_rep	mRNA	34975665	34977774	.	+	.	ID=Os04t0684800-01;Name=Os04t0684800-01;Locus_id=Os04g0684800;Oryzabase Gene Symbol Synonym(s)=OsUEV1D%2C UEV1D;Oryzabase Gene Name Synonym(s)=Ubc-E2 variant 1D;Note=Similar to CROC-1-like protein (Fragment).;Transcript_evidence=AK066799 (DDBJ%2C Best hit);ORF_evidence=Q259T8 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135);NIAS_FLcDNA=J013077E20;Oryzabase=21771;Expression=AK066799;TENOR=Os04t0684800-01;KEGG=Os04t0684800-01
Chr04	irgsp1_rep	five_prime_UTR	34975665	34975666	.	+	.	Parent=Os04t0684800-01
Chr04	irgsp1_rep	CDS	34975667	34975744	.	+	0	Parent=Os04t0684800-01
Chr04	irgsp1_rep	CDS	34975900	34976010	.	+	0	Parent=Os04t0684800-01
Chr04	irgsp1_rep	CDS	34976179	34976304	.	+	0	Parent=Os04t0684800-01
Chr04	irgsp1_rep	CDS	34977281	34977421	.	+	0	Parent=Os04t0684800-01
Chr04	irgsp1_rep	three_prime_UTR	34977422	34977774	.	+	.	Parent=Os04t0684800-01
Chr04	irgsp1_rep	mRNA	34977578	34977733	.	+	.	ID=Os04t0684800-02;Name=Os04t0684800-02;Locus_id=Os04g0684800;Oryzabase Gene Symbol Synonym(s)=OsUEV1D%2C UEV1D;Oryzabase Gene Name Synonym(s)=Ubc-E2 variant 1D;Note=Non-protein coding transcript.;Transcript_evidence=AK058755 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-001-A11;Oryzabase=21771;TENOR=Os04t0684800-02
Chr04	irgsp1_rep	exon	34977578	34977733	.	+	.	Parent=Os04t0684800-02
Chr04	irgsp1_rep	mRNA	34980601	34981819	.	+	.	ID=Os04t0684900-01;Name=Os04t0684900-01;Locus_id=Os04g0684900;RAP-DB Gene Symbol Synonym(s)=OsCAF1B%2C OsCAF1B(S)%2C OsCAF1-5;RAP-DB Gene Name Synonym(s)=CCR4-associated factor 1B%2C carbon cataboliterepressor 4-associated factor 1B%2C CCR4-associated factor 1-5;Oryzabase Gene Symbol Synonym(s)=OsCAF1B%2C OsCAF1-5;Oryzabase Gene Name Synonym(s)=CCR4-associated factor 1B%2C carbon catabolite repressor 4-associated factor 1B%2C CCR4-associated factor 1-5;Note=Component of the CCR4-NOTcomplex%2C Deadenylase%2C Deadenylation (poly(A) tail shortening)%2C Development and stress response;Transcript_evidence=AK111712;ORF_evidence=Q0J8W0;GO=Molecular Function: nucleic acid binding (GO:0003676),Cellular Component: nucleus (GO:0005634);InterPro=Ribonuclease CAF1 (IPR006941),Ribonuclease H-like domain (IPR012337);NIAS_FLcDNA=J023025J17;Manual Curation=July 27%2C 2015;Literature_PMID=24805883;Oryzabase=18145;Expression=AK111712;TENOR=Os04t0684900-01;KEGG=Os04t0684900-01
Chr04	irgsp1_rep	five_prime_UTR	34980601	34980711	.	+	.	Parent=Os04t0684900-01
Chr04	irgsp1_rep	CDS	34980712	34980743	.	+	0	Parent=Os04t0684900-01
Chr04	irgsp1_rep	CDS	34980864	34981701	.	+	1	Parent=Os04t0684900-01
Chr04	irgsp1_rep	three_prime_UTR	34981702	34981819	.	+	.	Parent=Os04t0684900-01
Chr04	irgsp1_rep	mRNA	34980601	34981819	.	+	.	ID=Os04t0684900-02;Name=Os04t0684900-02;Locus_id=Os04g0684900;RAP-DB Gene Symbol Synonym(s)=OsCAF1B%2C OsCAF1B(L)%2C OsCAF1-5;RAP-DB Gene Name Synonym(s)=CCR4-associated factor 1B%2C carbon cataboliterepressor 4-associated factor 1B%2C CCR4-associated factor 1-5;Oryzabase Gene Symbol Synonym(s)=OsCAF1B%2C OsCAF1-5;Oryzabase Gene Name Synonym(s)=CCR4-associated factor 1B%2C carbon catabolite repressor 4-associated factor 1B%2C CCR4-associated factor 1-5;Note=Component of the CCR4-NOTcomplex%2C Deadenylase%2C Component of the plant P-body%2C Deadenylation (poly(A) tail shortening)%2C Development and stress response;Transcript_evidence=AK111967;ORF_evidence=Q7XPU5;GO=Molecular Function: nucleic acid binding (GO:0003676),Cellular Component: nucleus (GO:0005634);InterPro=Ribonuclease CAF1 (IPR006941),Ribonuclease H-like domain (IPR012337);NIAS_FLcDNA=006-203-G11;Manual Curation=July 27%2C 2015;Literature_PMID=24805883;Oryzabase=18145;Expression=AK111967;TENOR=Os04t0684900-02;KEGG=Os04t0684900-02
Chr04	irgsp1_rep	five_prime_UTR	34980601	34980711	.	+	.	Parent=Os04t0684900-02
Chr04	irgsp1_rep	CDS	34980712	34981701	.	+	0	Parent=Os04t0684900-02
Chr04	irgsp1_rep	three_prime_UTR	34981702	34981819	.	+	.	Parent=Os04t0684900-02
Chr04	irgsp1_rep	mRNA	34988985	34989978	.	+	.	ID=Os04t0685000-01;Name=Os04t0685000-01;Locus_id=Os04g0685000;Oryzabase Gene Symbol Synonym(s)=OsOFP12%2C OsOFP17;Oryzabase Gene Name Synonym(s)=OVATE family protein 12%2C ovate family protein 17%2C OVATE-domain containing protein 17;Note=Protein of unknown function DUF623%2C plant domain containing protein.;Transcript_evidence=AK109189 (DDBJ%2C Best hit);ORF_evidence=Q259T6 (UniProt);InterPro=Domain of unknown function DUF623 (IPR006458);NIAS_FLcDNA=002-156-B01;Oryzabase=18308;Expression=AK109189;TENOR=Os04t0685000-01;KEGG=Os04t0685000-01
Chr04	irgsp1_rep	five_prime_UTR	34988985	34989099	.	+	.	Parent=Os04t0685000-01
Chr04	irgsp1_rep	CDS	34989100	34989840	.	+	0	Parent=Os04t0685000-01
Chr04	irgsp1_rep	three_prime_UTR	34989841	34989978	.	+	.	Parent=Os04t0685000-01
Chr04	irgsp1_rep	mRNA	34992137	34994799	.	-	.	ID=Os04t0685100-01;Name=Os04t0685100-01;Locus_id=Os04g0685100;Note=Ribosomal biogenesis regulatory protein family protein.;Transcript_evidence=AK065262 (DDBJ%2C Best hit);ORF_evidence=Q259U7 (UniProt);GO=Biological Process: ribosome biogenesis (GO:0042254),Cellular Component: nucleus (GO:0005634);InterPro=Ribosomal biogenesis regulatory protein (IPR007023);NIAS_FLcDNA=J013002J24;Expression=AK065262;TENOR=Os04t0685100-01;KEGG=Os04t0685100-01
Chr04	irgsp1_rep	five_prime_UTR	34994734	34994799	.	-	.	Parent=Os04t0685100-01
Chr04	irgsp1_rep	CDS	34994618	34994733	.	-	0	Parent=Os04t0685100-01
Chr04	irgsp1_rep	CDS	34994389	34994539	.	-	1	Parent=Os04t0685100-01
Chr04	irgsp1_rep	CDS	34993811	34993862	.	-	0	Parent=Os04t0685100-01
Chr04	irgsp1_rep	CDS	34993563	34993691	.	-	2	Parent=Os04t0685100-01
Chr04	irgsp1_rep	CDS	34993126	34993243	.	-	2	Parent=Os04t0685100-01
Chr04	irgsp1_rep	CDS	34992784	34992970	.	-	1	Parent=Os04t0685100-01
Chr04	irgsp1_rep	CDS	34992577	34992690	.	-	0	Parent=Os04t0685100-01
Chr04	irgsp1_rep	CDS	34992339	34992464	.	-	0	Parent=Os04t0685100-01
Chr04	irgsp1_rep	three_prime_UTR	34992137	34992338	.	-	.	Parent=Os04t0685100-01
Chr04	irgsp1_rep	mRNA	34997551	34998729	.	-	.	ID=Os04t0685151-00;Name=Os04t0685151-00;Locus_id=Os04g0685151;Note=Hypothetical gene.;Transcript_evidence=EU952183 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0685151-00;KEGG=Os04t0685151-00
Chr04	irgsp1_rep	five_prime_UTR	34998677	34998729	.	-	.	Parent=Os04t0685151-00
Chr04	irgsp1_rep	CDS	34997783	34998676	.	-	0	Parent=Os04t0685151-00
Chr04	irgsp1_rep	three_prime_UTR	34997551	34997782	.	-	.	Parent=Os04t0685151-00
Chr04	irgsp1_rep	mRNA	34997670	34998861	.	+	.	ID=Os04t0685200-01;Name=Os04t0685200-01;Locus_id=Os04g0685200;Note=Peptidase aspartic%2C catalytic domain containing protein.;Transcript_evidence=AK060191 (DDBJ%2C Best hit);ORF_evidence=Q259U6 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=001-001-E05;Expression=AK060191;TENOR=Os04t0685200-01;KEGG=Os04t0685200-01
Chr04	irgsp1_rep	five_prime_UTR	34997670	34997671	.	+	.	Parent=Os04t0685200-01
Chr04	irgsp1_rep	CDS	34997672	34998664	.	+	0	Parent=Os04t0685200-01
Chr04	irgsp1_rep	three_prime_UTR	34998665	34998861	.	+	.	Parent=Os04t0685200-01
Chr04	irgsp1_rep	mRNA	35001018	35002142	.	-	.	ID=Os04t0685300-02;Name=Os04t0685300-02;Locus_id=Os04g0685300;Oryzabase Gene Name Synonym(s)=Harpin-induced 1 domain containing protein;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK070446 (DDBJ%2C Best hit),AK104363 (DDBJ%2C Best hit);ORF_evidence=Q259U5 (UniProt);NIAS_FLcDNA=J023054G10,001-035-C10;Oryzabase=22683;Expression=AK070446;TENOR=Os04t0685300-02;KEGG=Os04t0685300-02
Chr04	irgsp1_rep	five_prime_UTR	35002017	35002142	.	-	.	Parent=Os04t0685300-02
Chr04	irgsp1_rep	CDS	35001399	35002016	.	-	0	Parent=Os04t0685300-02
Chr04	irgsp1_rep	three_prime_UTR	35001018	35001398	.	-	.	Parent=Os04t0685300-02
Chr04	irgsp1_rep	mRNA	35011005	35012423	.	-	.	ID=Os04t0685400-01;Name=Os04t0685400-01;Locus_id=Os04g0685400;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK103610 (DDBJ%2C Best hit);ORF_evidence=Q259M8 (UniProt);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=J033133J15;Oryzabase=22768;Expression=AK103610;TENOR=Os04t0685400-01;KEGG=Os04t0685400-01
Chr04	irgsp1_rep	five_prime_UTR	35012012	35012423	.	-	.	Parent=Os04t0685400-01
Chr04	irgsp1_rep	CDS	35011349	35012011	.	-	0	Parent=Os04t0685400-01
Chr04	irgsp1_rep	three_prime_UTR	35011005	35011348	.	-	.	Parent=Os04t0685400-01
Chr04	irgsp1_rep	mRNA	35011024	35012050	.	-	.	ID=Os04t0685400-02;Name=Os04t0685400-02;Locus_id=Os04g0685400;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK061257 (DDBJ%2C Best hit),AK069353 (DDBJ%2C Best hit);ORF_evidence=Q259M8 (UniProt);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=006-212-B04,J023014D16;Oryzabase=22768;TENOR=Os04t0685400-02
Chr04	irgsp1_rep	five_prime_UTR	35012012	35012050	.	-	.	Parent=Os04t0685400-02
Chr04	irgsp1_rep	CDS	35011349	35012011	.	-	0	Parent=Os04t0685400-02
Chr04	irgsp1_rep	three_prime_UTR	35011024	35011348	.	-	.	Parent=Os04t0685400-02
Chr04	irgsp1_rep	mRNA	35013422	35020132	.	-	.	ID=Os04t0685500-01;Name=Os04t0685500-01;Locus_id=Os04g0685500;CGSNL Gene Symbol=EXO70A2;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A2;Oryzabase Gene Symbol Synonym(s)=OsEXO70A2%2C OsExo70A2%2C OrysaA2_Exo70;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein A2;Note=Exo70 exocyst complex subunit domain containing protein.;Transcript_evidence=AK073436 (DDBJ%2C Best hit);ORF_evidence=Q7XPT9 (UniProt);GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exo70 exocyst complex subunit (IPR004140),Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=J033041B18;Oryzabase=20321;TENOR=Os04t0685500-01;KEGG=Os04t0685500-01
Chr04	irgsp1_rep	five_prime_UTR	35020063	35020132	.	-	.	Parent=Os04t0685500-01
Chr04	irgsp1_rep	CDS	35020036	35020062	.	-	0	Parent=Os04t0685500-01
Chr04	irgsp1_rep	CDS	35019288	35019496	.	-	0	Parent=Os04t0685500-01
Chr04	irgsp1_rep	CDS	35018955	35019188	.	-	1	Parent=Os04t0685500-01
Chr04	irgsp1_rep	CDS	35018720	35018858	.	-	1	Parent=Os04t0685500-01
Chr04	irgsp1_rep	CDS	35018426	35018638	.	-	0	Parent=Os04t0685500-01
Chr04	irgsp1_rep	CDS	35018063	35018268	.	-	0	Parent=Os04t0685500-01
Chr04	irgsp1_rep	CDS	35017940	35017973	.	-	1	Parent=Os04t0685500-01
Chr04	irgsp1_rep	three_prime_UTR	35017756	35017939	.	-	.	Parent=Os04t0685500-01
Chr04	irgsp1_rep	three_prime_UTR	35017587	35017686	.	-	.	Parent=Os04t0685500-01
Chr04	irgsp1_rep	three_prime_UTR	35017377	35017498	.	-	.	Parent=Os04t0685500-01
Chr04	irgsp1_rep	three_prime_UTR	35017131	35017277	.	-	.	Parent=Os04t0685500-01
Chr04	irgsp1_rep	three_prime_UTR	35016874	35017023	.	-	.	Parent=Os04t0685500-01
Chr04	irgsp1_rep	three_prime_UTR	35013422	35014062	.	-	.	Parent=Os04t0685500-01
Chr04	irgsp1_rep	mRNA	35016994	35020120	.	-	.	ID=Os04t0685500-02;Name=Os04t0685500-02;Locus_id=Os04g0685500;CGSNL Gene Symbol=EXO70A2;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A2;Oryzabase Gene Symbol Synonym(s)=OsEXO70A2%2C OsExo70A2%2C OrysaA2_Exo70;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein A2;Note=Hypothetical conserved gene.;Transcript_evidence=AK070655 (DDBJ%2C Best hit);ORF_evidence=Q259N6 (UniProt);GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exo70 exocyst complex subunit (IPR004140),Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=J023055J22;Oryzabase=20321;TENOR=Os04t0685500-02
Chr04	irgsp1_rep	five_prime_UTR	35020063	35020120	.	-	.	Parent=Os04t0685500-02
Chr04	irgsp1_rep	CDS	35020036	35020062	.	-	0	Parent=Os04t0685500-02
Chr04	irgsp1_rep	CDS	35019288	35019496	.	-	0	Parent=Os04t0685500-02
Chr04	irgsp1_rep	CDS	35018955	35019188	.	-	1	Parent=Os04t0685500-02
Chr04	irgsp1_rep	CDS	35018720	35018858	.	-	1	Parent=Os04t0685500-02
Chr04	irgsp1_rep	CDS	35018426	35018638	.	-	0	Parent=Os04t0685500-02
Chr04	irgsp1_rep	CDS	35018063	35018268	.	-	0	Parent=Os04t0685500-02
Chr04	irgsp1_rep	CDS	35017756	35017956	.	-	1	Parent=Os04t0685500-02
Chr04	irgsp1_rep	CDS	35017587	35017686	.	-	1	Parent=Os04t0685500-02
Chr04	irgsp1_rep	CDS	35017377	35017498	.	-	0	Parent=Os04t0685500-02
Chr04	irgsp1_rep	CDS	35017131	35017277	.	-	1	Parent=Os04t0685500-02
Chr04	irgsp1_rep	CDS	35016994	35017023	.	-	1	Parent=Os04t0685500-02
Chr04	irgsp1_rep	mRNA	35022041	35028128	.	-	.	ID=Os04t0685600-01;Name=Os04t0685600-01;Locus_id=Os04g0685600;CGSNL Gene Symbol=RLS2;CGSNL Gene Name=RAPID LEAF SENESCENCE 2;Oryzabase Gene Symbol Synonym(s)=OsEXO70A1%2C OsExo70A1%2C EXO70A1%2C OrysaA1_Exo70;Oryzabase Gene Name Synonym(s)=rapid leaf senescence2%2C rapid leaf senescence 2%2C exocyst subunit EXO70 family protein A1;Note=Similar to H0723C07.3 protein.;Transcript_evidence=AK067506 (DDBJ%2C Best hit);ORF_evidence=Q259N6 (UniProt);GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exo70 exocyst complex subunit (IPR004140),Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=J013108D21;Oryzabase=20305;TENOR=Os04t0685600-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	35027902	35028128	.	-	.	Parent=Os04t0685600-01
Chr04	irgsp1_rep	CDS	35027761	35027901	.	-	0	Parent=Os04t0685600-01
Chr04	irgsp1_rep	CDS	35027525	35027620	.	-	0	Parent=Os04t0685600-01
Chr04	irgsp1_rep	CDS	35026549	35026754	.	-	0	Parent=Os04t0685600-01
Chr04	irgsp1_rep	CDS	35026231	35026467	.	-	1	Parent=Os04t0685600-01
Chr04	irgsp1_rep	CDS	35025646	35025784	.	-	1	Parent=Os04t0685600-01
Chr04	irgsp1_rep	CDS	35025365	35025577	.	-	0	Parent=Os04t0685600-01
Chr04	irgsp1_rep	CDS	35024535	35024740	.	-	0	Parent=Os04t0685600-01
Chr04	irgsp1_rep	CDS	35023969	35024169	.	-	1	Parent=Os04t0685600-01
Chr04	irgsp1_rep	CDS	35023768	35023867	.	-	1	Parent=Os04t0685600-01
Chr04	irgsp1_rep	CDS	35023536	35023645	.	-	0	Parent=Os04t0685600-01
Chr04	irgsp1_rep	CDS	35023290	35023436	.	-	1	Parent=Os04t0685600-01
Chr04	irgsp1_rep	CDS	35022386	35022494	.	-	1	Parent=Os04t0685600-01
Chr04	irgsp1_rep	three_prime_UTR	35022041	35022385	.	-	.	Parent=Os04t0685600-01
Chr04	irgsp1_rep	mRNA	35031210	35032643	.	-	.	ID=Os04t0685700-01;Name=Os04t0685700-01;Locus_id=Os04g0685700;Note=Similar to H0723C07.4 protein.;Transcript_evidence=AK243255 (DDBJ%2C Best hit);ORF_evidence=Q259M7 (UniProt);NIAS_FLcDNA=J100048F19;TENOR=Os04t0685700-01;KEGG=Os04t0685700-01
Chr04	irgsp1_rep	five_prime_UTR	35032521	35032643	.	-	.	Parent=Os04t0685700-01
Chr04	irgsp1_rep	CDS	35031675	35032520	.	-	0	Parent=Os04t0685700-01
Chr04	irgsp1_rep	three_prime_UTR	35031210	35031674	.	-	.	Parent=Os04t0685700-01
Chr04	irgsp1_rep	mRNA	35034889	35037788	.	+	.	ID=Os04t0685800-01;Name=Os04t0685800-01;Locus_id=Os04g0685800;Note=Similar to H0723C07.5 protein.;Transcript_evidence=AK071345 (DDBJ%2C Best hit),AK070891 (DDBJ%2C Best hit);ORF_evidence=Q259N5 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=NUDIX hydrolase domain (IPR000086),NUDIX hydrolase domain-like (IPR015797),NUDIX hydrolase%2C conserved site (IPR020084),NUDIX hydrolase (IPR020476),RNA pyrophosphohydrolase RppH (IPR022927);NIAS_FLcDNA=J023097E09,J023069G19;TENOR=Os04t0685800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	35034889	35035048	.	+	.	Parent=Os04t0685800-01
Chr04	irgsp1_rep	CDS	35035049	35035115	.	+	0	Parent=Os04t0685800-01
Chr04	irgsp1_rep	CDS	35035217	35035269	.	+	2	Parent=Os04t0685800-01
Chr04	irgsp1_rep	CDS	35035351	35035443	.	+	0	Parent=Os04t0685800-01
Chr04	irgsp1_rep	CDS	35035619	35035716	.	+	0	Parent=Os04t0685800-01
Chr04	irgsp1_rep	CDS	35037298	35037412	.	+	1	Parent=Os04t0685800-01
Chr04	irgsp1_rep	CDS	35037489	35037581	.	+	0	Parent=Os04t0685800-01
Chr04	irgsp1_rep	three_prime_UTR	35037582	35037788	.	+	.	Parent=Os04t0685800-01
Chr04	irgsp1_rep	mRNA	35039986	35043790	.	-	.	ID=Os04t0685900-01;Name=Os04t0685900-01;Locus_id=Os04g0685900;CGSNL Gene Symbol=RLCK174;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 174;Oryzabase Gene Symbol Synonym(s)=OsRLCK174;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 174;Note=Similar to Receptor-like protein kinase-like protein (Fragment).;Transcript_evidence=AK121964 (DDBJ%2C Best hit);ORF_evidence=Q259M6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J033108C14;Oryzabase=18877;Expression=AK121964;TENOR=Os04t0685900-01;KEGG=Os04t0685900-01
Chr04	irgsp1_rep	five_prime_UTR	35043556	35043790	.	-	.	Parent=Os04t0685900-01
Chr04	irgsp1_rep	CDS	35041257	35043555	.	-	0	Parent=Os04t0685900-01
Chr04	irgsp1_rep	CDS	35040270	35040787	.	-	2	Parent=Os04t0685900-01
Chr04	irgsp1_rep	three_prime_UTR	35039986	35040269	.	-	.	Parent=Os04t0685900-01
Chr04	irgsp1_rep	mRNA	35042124	35043705	.	-	.	ID=Os04t0685900-02;Name=Os04t0685900-02;Locus_id=Os04g0685900;CGSNL Gene Symbol=RLCK174;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 174;Oryzabase Gene Symbol Synonym(s)=OsRLCK174;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 174;Note=Similar to H0723C07.6 protein.;Transcript_evidence=AK063635 (DDBJ%2C Best hit);ORF_evidence=Q84P72 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=001-118-G01;Oryzabase=18877;TENOR=Os04t0685900-02
Chr04	irgsp1_rep	five_prime_UTR	35043556	35043705	.	-	.	Parent=Os04t0685900-02
Chr04	irgsp1_rep	CDS	35042124	35043555	.	-	0	Parent=Os04t0685900-02
Chr04	irgsp1_rep	mRNA	35054571	35056161	.	-	.	ID=Os04t0686000-01;Name=Os04t0686000-01;Locus_id=Os04g0686000;Oryzabase Gene Symbol Synonym(s)=OsPUB32;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 32%2C U-box protein 32;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK108418 (DDBJ%2C Best hit);ORF_evidence=Q259M5 (UniProt);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488);InterPro=U box domain (IPR003613),Armadillo-like helical (IPR011989),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Armadillo-type fold (IPR016024);NIAS_FLcDNA=002-142-H10;Oryzabase=17824;Expression=AK108418;TENOR=Os04t0686000-01;KEGG=Os04t0686000-01
Chr04	irgsp1_rep	five_prime_UTR	35056019	35056161	.	-	.	Parent=Os04t0686000-01
Chr04	irgsp1_rep	CDS	35054777	35056018	.	-	0	Parent=Os04t0686000-01
Chr04	irgsp1_rep	three_prime_UTR	35054571	35054776	.	-	.	Parent=Os04t0686000-01
Chr04	irgsp1_rep	mRNA	35064007	35064276	.	-	.	ID=Os04t0686100-00;Name=Os04t0686100-00;Locus_id=Os04g0686100;Note=Similar to H0723C07.9 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q259M4 (UniProt);TENOR=Os04t0686100-00;KEGG=Os04t0686100-00
Chr04	irgsp1_rep	CDS	35064007	35064276	.	-	0	Parent=Os04t0686100-00
Chr04	irgsp1_rep	mRNA	35067307	35074531	.	-	.	ID=Os04t0686200-01;Name=Os04t0686200-01;Locus_id=Os04g0686200;Note=Similar to Chromosome condensation regulator protein (Fragment).;Transcript_evidence=AK121864 (DDBJ%2C Best hit);ORF_evidence=Q259N3 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C FYVE-type (IPR000306),Regulator of Chromosome condensation%2C RCC1 (IPR000408),Regulator of Chromosome condensation/beta-lactamase-inhibitor protein II (IPR009091),Zinc finger%2C FYVE/PHD-type (IPR011011),Pleckstrin homology-type (IPR011993),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Brevis radix-like domain (IPR013591),Zinc finger%2C FYVE-related (IPR017455);NIAS_FLcDNA=J033103C22;Expression=AK121864;TENOR=Os04t0686200-01;KEGG=Os04t0686200-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	35074226	35074531	.	-	.	Parent=Os04t0686200-01
Chr04	irgsp1_rep	CDS	35074199	35074225	.	-	0	Parent=Os04t0686200-01
Chr04	irgsp1_rep	CDS	35072585	35072671	.	-	0	Parent=Os04t0686200-01
Chr04	irgsp1_rep	CDS	35072195	35072284	.	-	0	Parent=Os04t0686200-01
Chr04	irgsp1_rep	CDS	35072038	35072124	.	-	0	Parent=Os04t0686200-01
Chr04	irgsp1_rep	CDS	35071824	35071949	.	-	0	Parent=Os04t0686200-01
Chr04	irgsp1_rep	CDS	35069150	35071123	.	-	0	Parent=Os04t0686200-01
Chr04	irgsp1_rep	CDS	35068926	35069072	.	-	0	Parent=Os04t0686200-01
Chr04	irgsp1_rep	CDS	35067848	35068365	.	-	0	Parent=Os04t0686200-01
Chr04	irgsp1_rep	CDS	35067612	35067729	.	-	1	Parent=Os04t0686200-01
Chr04	irgsp1_rep	three_prime_UTR	35067307	35067611	.	-	.	Parent=Os04t0686200-01
Chr04	irgsp1_rep	mRNA	35084318	35086242	.	-	.	ID=Os04t0686300-01;Name=Os04t0686300-01;Locus_id=Os04g0686300;Note=Protein of unknown function DUF167 family protein.;Transcript_evidence=AK070132 (DDBJ%2C Best hit);ORF_evidence=Q259N2 (UniProt);InterPro=Protein of unknown function DUF167 (IPR003746);NIAS_FLcDNA=J023044D05;Expression=AK070132;TENOR=Os04t0686300-01;KEGG=Os04t0686300-01
Chr04	irgsp1_rep	five_prime_UTR	35086234	35086242	.	-	.	Parent=Os04t0686300-01
Chr04	irgsp1_rep	CDS	35086065	35086233	.	-	0	Parent=Os04t0686300-01
Chr04	irgsp1_rep	CDS	35085893	35085981	.	-	2	Parent=Os04t0686300-01
Chr04	irgsp1_rep	CDS	35084483	35084614	.	-	0	Parent=Os04t0686300-01
Chr04	irgsp1_rep	three_prime_UTR	35084318	35084482	.	-	.	Parent=Os04t0686300-01
Chr04	irgsp1_rep	mRNA	35086778	35089294	.	-	.	ID=Os04t0686500-01;Name=Os04t0686500-01;Locus_id=Os04g0686500;Note=Similar to H0723C07.12 protein.;Transcript_evidence=AK110404 (DDBJ%2C Best hit);ORF_evidence=Q259N1 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=002-165-G03;TENOR=Os04t0686500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	35089045	35089294	.	-	.	Parent=Os04t0686500-01
Chr04	irgsp1_rep	CDS	35086939	35089044	.	-	0	Parent=Os04t0686500-01
Chr04	irgsp1_rep	three_prime_UTR	35086778	35086938	.	-	.	Parent=Os04t0686500-01
Chr04	irgsp1_rep	mRNA	35089396	35091243	.	-	.	ID=Os04t0686600-01;Name=Os04t0686600-01;Locus_id=Os04g0686600;Note=Similar to H0723C07.12 protein.;Transcript_evidence=AK068427 (DDBJ%2C Best hit);ORF_evidence=Q259N1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013155F22;TENOR=Os04t0686600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	35091221	35091243	.	-	.	Parent=Os04t0686600-01
Chr04	irgsp1_rep	CDS	35090975	35091220	.	-	0	Parent=Os04t0686600-01
Chr04	irgsp1_rep	CDS	35090677	35090898	.	-	0	Parent=Os04t0686600-01
Chr04	irgsp1_rep	three_prime_UTR	35090295	35090676	.	-	.	Parent=Os04t0686600-01
Chr04	irgsp1_rep	three_prime_UTR	35090075	35090168	.	-	.	Parent=Os04t0686600-01
Chr04	irgsp1_rep	three_prime_UTR	35089910	35089990	.	-	.	Parent=Os04t0686600-01
Chr04	irgsp1_rep	three_prime_UTR	35089719	35089830	.	-	.	Parent=Os04t0686600-01
Chr04	irgsp1_rep	three_prime_UTR	35089396	35089638	.	-	.	Parent=Os04t0686600-01
Chr04	irgsp1_rep	mRNA	35091588	35097920	.	-	.	ID=Os04t0686650-00;Name=Os04t0686650-00;Locus_id=Os04g0686650;Note=Similar to H0723C07.13 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q259N0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os04t0686650-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	35097682	35097920	.	-	0	Parent=Os04t0686650-00
Chr04	irgsp1_rep	CDS	35097022	35097123	.	-	1	Parent=Os04t0686650-00
Chr04	irgsp1_rep	CDS	35096338	35096405	.	-	1	Parent=Os04t0686650-00
Chr04	irgsp1_rep	CDS	35096125	35096249	.	-	2	Parent=Os04t0686650-00
Chr04	irgsp1_rep	CDS	35095883	35095933	.	-	0	Parent=Os04t0686650-00
Chr04	irgsp1_rep	CDS	35095533	35095669	.	-	0	Parent=Os04t0686650-00
Chr04	irgsp1_rep	CDS	35094948	35095036	.	-	1	Parent=Os04t0686650-00
Chr04	irgsp1_rep	CDS	35093253	35093428	.	-	2	Parent=Os04t0686650-00
Chr04	irgsp1_rep	CDS	35093089	35093184	.	-	0	Parent=Os04t0686650-00
Chr04	irgsp1_rep	CDS	35092617	35092697	.	-	0	Parent=Os04t0686650-00
Chr04	irgsp1_rep	CDS	35092457	35092507	.	-	0	Parent=Os04t0686650-00
Chr04	irgsp1_rep	CDS	35092184	35092324	.	-	0	Parent=Os04t0686650-00
Chr04	irgsp1_rep	CDS	35091588	35091623	.	-	0	Parent=Os04t0686650-00
Chr04	irgsp1_rep	mRNA	35105256	35106781	.	-	.	ID=Os04t0686700-01;Name=Os04t0686700-01;Locus_id=Os04g0686700;Oryzabase Gene Symbol Synonym(s)=OsFbox239%2C Os_F0304;Oryzabase Gene Name Synonym(s)=F-box protein 239;Note=Similar to H0701F11.1 protein.;Transcript_evidence=AK105746 (DDBJ%2C Best hit);ORF_evidence=Q259L5 (UniProt);NIAS_FLcDNA=001-202-B06;Oryzabase=17025;TENOR=Os04t0686700-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	35105504	35106781	.	-	0	Parent=Os04t0686700-01
Chr04	irgsp1_rep	three_prime_UTR	35105256	35105503	.	-	.	Parent=Os04t0686700-01
Chr04	irgsp1_rep	mRNA	35111460	35112512	.	+	.	ID=Os04t0686800-01;Name=Os04t0686800-01;Locus_id=Os04g0686800;Oryzabase Gene Name Synonym(s)=OsNodulin-like2%2C Nodulin-like2;Note=Similar to H0701F11.2 protein.;Transcript_evidence=AK243145 (DDBJ%2C Best hit);ORF_evidence=Q259L4 (UniProt);InterPro=Domain of unknown function DUF125%2C transmembrane (IPR008217);NIAS_FLcDNA=J100032C24;Oryzabase=21393;TENOR=Os04t0686800-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	35111460	35111522	.	+	.	Parent=Os04t0686800-01
Chr04	irgsp1_rep	CDS	35111523	35112149	.	+	0	Parent=Os04t0686800-01
Chr04	irgsp1_rep	three_prime_UTR	35112150	35112512	.	+	.	Parent=Os04t0686800-01
Chr04	irgsp1_rep	mRNA	35120757	35124119	.	-	.	ID=Os04t0687100-01;Name=Os04t0687100-01;Locus_id=Os04g0687100;Oryzabase Gene Name Synonym(s)=Inorganic pyrophosphatase%2C sPPase%2C Soluble Inorganic Pyrophosphatase;Note=Similar to Soluble inorganic pyrophosphatase (EC 3.6.1.1) (Pyrophosphate phospho- hydrolase) (PPase).;Transcript_evidence=AK073929 (DDBJ%2C Best hit),AK061239 (DDBJ%2C Best hit);ORF_evidence=Q56US1 (UniProt);NIAS_FLcDNA=J033073D22,006-211-C05;Oryzabase=17638;TENOR=Os04t0687100-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	35124033	35124119	.	-	.	Parent=Os04t0687100-01
Chr04	irgsp1_rep	five_prime_UTR	35123555	35123558	.	-	.	Parent=Os04t0687100-01
Chr04	irgsp1_rep	CDS	35123428	35123554	.	-	0	Parent=Os04t0687100-01
Chr04	irgsp1_rep	CDS	35123313	35123341	.	-	2	Parent=Os04t0687100-01
Chr04	irgsp1_rep	CDS	35122190	35122255	.	-	0	Parent=Os04t0687100-01
Chr04	irgsp1_rep	CDS	35121838	35121945	.	-	0	Parent=Os04t0687100-01
Chr04	irgsp1_rep	CDS	35121544	35121609	.	-	0	Parent=Os04t0687100-01
Chr04	irgsp1_rep	CDS	35121317	35121437	.	-	0	Parent=Os04t0687100-01
Chr04	irgsp1_rep	CDS	35121135	35121216	.	-	2	Parent=Os04t0687100-01
Chr04	irgsp1_rep	CDS	35120960	35121002	.	-	1	Parent=Os04t0687100-01
Chr04	irgsp1_rep	three_prime_UTR	35120757	35120959	.	-	.	Parent=Os04t0687100-01
Chr04	irgsp1_rep	mRNA	35120940	35123558	.	+	.	ID=Os04t0687125-00;Name=Os04t0687125-00;Locus_id=Os04g0687125;Note=Hypothetical gene.;Transcript_evidence=BT019269 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0687125-00;KEGG=Os04t0687125-00
Chr04	irgsp1_rep	five_prime_UTR	35120940	35120998	.	+	.	Parent=Os04t0687125-00
Chr04	irgsp1_rep	five_prime_UTR	35121128	35121214	.	+	.	Parent=Os04t0687125-00
Chr04	irgsp1_rep	five_prime_UTR	35121312	35121380	.	+	.	Parent=Os04t0687125-00
Chr04	irgsp1_rep	CDS	35121381	35121436	.	+	0	Parent=Os04t0687125-00
Chr04	irgsp1_rep	CDS	35121543	35121611	.	+	1	Parent=Os04t0687125-00
Chr04	irgsp1_rep	CDS	35121834	35121924	.	+	1	Parent=Os04t0687125-00
Chr04	irgsp1_rep	three_prime_UTR	35121925	35121939	.	+	.	Parent=Os04t0687125-00
Chr04	irgsp1_rep	three_prime_UTR	35122181	35122257	.	+	.	Parent=Os04t0687125-00
Chr04	irgsp1_rep	three_prime_UTR	35123407	35123558	.	+	.	Parent=Os04t0687125-00
Chr04	irgsp1_rep	mRNA	35126922	35128044	.	-	.	ID=Os04t0687150-01;Name=Os04t0687150-01;Locus_id=Os04g0687150;Note=Hypothetical protein.;Transcript_evidence=AK099969 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013127J02;TENOR=Os04t0687150-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	35127592	35128044	.	-	.	Parent=Os04t0687150-01
Chr04	irgsp1_rep	CDS	35127271	35127591	.	-	0	Parent=Os04t0687150-01
Chr04	irgsp1_rep	three_prime_UTR	35126922	35127270	.	-	.	Parent=Os04t0687150-01
Chr04	irgsp1_rep	mRNA	35127153	35128399	.	+	.	ID=Os04t0687200-01;Name=Os04t0687200-01;Locus_id=Os04g0687200;Note=Similar to H0701F11.5 protein.;Transcript_evidence=AK060697 (DDBJ%2C Best hit);ORF_evidence=Q259L1 (UniProt);NIAS_FLcDNA=001-030-E01;TENOR=Os04t0687200-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	35127153	35127343	.	+	.	Parent=Os04t0687200-01
Chr04	irgsp1_rep	CDS	35127344	35127690	.	+	0	Parent=Os04t0687200-01
Chr04	irgsp1_rep	CDS	35127788	35128016	.	+	1	Parent=Os04t0687200-01
Chr04	irgsp1_rep	three_prime_UTR	35128017	35128399	.	+	.	Parent=Os04t0687200-01
Chr04	irgsp1_rep	mRNA	35127273	35128208	.	+	.	ID=Os04t0687200-02;Name=Os04t0687200-02;Locus_id=Os04g0687200;Note=Similar to H0701F11.5 protein.;Transcript_evidence=AK102818 (DDBJ%2C Best hit);ORF_evidence=Q259L1 (UniProt);NIAS_FLcDNA=J033108N17;TENOR=Os04t0687200-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	35127273	35127343	.	+	.	Parent=Os04t0687200-02
Chr04	irgsp1_rep	CDS	35127344	35127690	.	+	0	Parent=Os04t0687200-02
Chr04	irgsp1_rep	CDS	35127788	35128016	.	+	1	Parent=Os04t0687200-02
Chr04	irgsp1_rep	three_prime_UTR	35128017	35128208	.	+	.	Parent=Os04t0687200-02
Chr04	irgsp1_rep	mRNA	35128695	35132608	.	-	.	ID=Os04t0687300-01;Name=Os04t0687300-01;Locus_id=Os04g0687300;Oryzabase Gene Symbol Synonym(s)=OsDjC46;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C46%2C rice DJC72 homolog;Note=Molecular chaperone%2C heat shock protein%2C Hsp40%2C DnaJ domain containing protein.;Transcript_evidence=AK060617 (DDBJ%2C Best hit);ORF_evidence=Q259L0 (UniProt);GO=Molecular Function: heat shock protein binding (GO:0031072);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623);NIAS_FLcDNA=001-026-B11;Oryzabase=12203;Expression=AK060617;TENOR=Os04t0687300-01;KEGG=Os04t0687300-01
Chr04	irgsp1_rep	five_prime_UTR	35132382	35132608	.	-	.	Parent=Os04t0687300-01
Chr04	irgsp1_rep	CDS	35132244	35132381	.	-	0	Parent=Os04t0687300-01
Chr04	irgsp1_rep	CDS	35131430	35131459	.	-	0	Parent=Os04t0687300-01
Chr04	irgsp1_rep	CDS	35130577	35130672	.	-	0	Parent=Os04t0687300-01
Chr04	irgsp1_rep	CDS	35130277	35130397	.	-	0	Parent=Os04t0687300-01
Chr04	irgsp1_rep	CDS	35129411	35129720	.	-	2	Parent=Os04t0687300-01
Chr04	irgsp1_rep	CDS	35129237	35129291	.	-	1	Parent=Os04t0687300-01
Chr04	irgsp1_rep	CDS	35128990	35129064	.	-	0	Parent=Os04t0687300-01
Chr04	irgsp1_rep	three_prime_UTR	35128695	35128989	.	-	.	Parent=Os04t0687300-01
Chr04	irgsp1_rep	mRNA	35167839	35170996	.	+	.	ID=Os04t0687800-01;Name=Os04t0687800-01;Locus_id=Os04g0687800;CGSNL Gene Symbol=UMAMIT7;CGSNL Gene Name=USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 7;Oryzabase Gene Symbol Synonym(s)=OsUMAMIT7;Oryzabase Gene Name Synonym(s)=Usually Multiple Acids Move In and out Transporter 7;Note=Protein of unknown function DUF6%2C transmembrane domain containing protein.;Transcript_evidence=AK107360 (DDBJ%2C Best hit);ORF_evidence=Q259K9 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=002-127-A04;Oryzabase=21376;Expression=AK107360;TENOR=Os04t0687800-01;KEGG=Os04t0687800-01
Chr04	irgsp1_rep	five_prime_UTR	35167839	35167845	.	+	.	Parent=Os04t0687800-01
Chr04	irgsp1_rep	CDS	35167846	35168039	.	+	0	Parent=Os04t0687800-01
Chr04	irgsp1_rep	CDS	35168491	35168553	.	+	1	Parent=Os04t0687800-01
Chr04	irgsp1_rep	CDS	35169710	35170691	.	+	1	Parent=Os04t0687800-01
Chr04	irgsp1_rep	three_prime_UTR	35170692	35170996	.	+	.	Parent=Os04t0687800-01
Chr04	irgsp1_rep	mRNA	35176157	35179771	.	+	.	ID=Os04t0687900-01;Name=Os04t0687900-01;Locus_id=Os04g0687900;Oryzabase Gene Symbol Synonym(s)=OsTLP3%2C OsTLP7%2C OsFbox240%2C Os_F0401;Oryzabase Gene Name Synonym(s)=tubby-like protein 3%2C tubby-like protein 7%2C F-box protein 240;Note=Similar to T24D18.17 protein (Tubby-like protein TULP8).;Transcript_evidence=AK066910 (DDBJ%2C Best hit),AK098928 (DDBJ%2C Best hit);ORF_evidence=Q9ST78 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Tubby%2C C-terminal (IPR000007),F-box domain%2C cyclin-like (IPR001810),Tubby%2C C-terminal%2C conserved site (IPR018066),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013091C11,J013023N16;Oryzabase=14705;Expression=AK066910;TENOR=Os04t0687900-01;KEGG=Os04t0687900-01
Chr04	irgsp1_rep	five_prime_UTR	35176157	35176280	.	+	.	Parent=Os04t0687900-01
Chr04	irgsp1_rep	five_prime_UTR	35176621	35176652	.	+	.	Parent=Os04t0687900-01
Chr04	irgsp1_rep	CDS	35176653	35177009	.	+	0	Parent=Os04t0687900-01
Chr04	irgsp1_rep	CDS	35177517	35177604	.	+	0	Parent=Os04t0687900-01
Chr04	irgsp1_rep	CDS	35178450	35178582	.	+	2	Parent=Os04t0687900-01
Chr04	irgsp1_rep	CDS	35178683	35179493	.	+	1	Parent=Os04t0687900-01
Chr04	irgsp1_rep	three_prime_UTR	35179494	35179771	.	+	.	Parent=Os04t0687900-01
Chr04	irgsp1_rep	mRNA	35176163	35178538	.	+	.	ID=Os04t0687900-02;Name=Os04t0687900-02;Locus_id=Os04g0687900;Oryzabase Gene Symbol Synonym(s)=OsTLP3%2C OsTLP7%2C OsFbox240%2C Os_F0401;Oryzabase Gene Name Synonym(s)=tubby-like protein 3%2C tubby-like protein 7%2C F-box protein 240;Note=Similar to CAA303719.1 protein.;Transcript_evidence=AK062547 (DDBJ%2C Best hit);ORF_evidence=Q9ST78 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Tubby%2C C-terminal (IPR000007),F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=001-104-G09;Oryzabase=14705;Expression=AK062547;TENOR=Os04t0687900-02;KEGG=Os04t0687900-02
Chr04	irgsp1_rep	five_prime_UTR	35176163	35176280	.	+	.	Parent=Os04t0687900-02
Chr04	irgsp1_rep	five_prime_UTR	35176621	35176652	.	+	.	Parent=Os04t0687900-02
Chr04	irgsp1_rep	CDS	35176653	35177009	.	+	0	Parent=Os04t0687900-02
Chr04	irgsp1_rep	CDS	35177517	35177604	.	+	0	Parent=Os04t0687900-02
Chr04	irgsp1_rep	CDS	35178450	35178538	.	+	2	Parent=Os04t0687900-02
Chr04	irgsp1_rep	mRNA	35176194	35179785	.	+	.	ID=Os04t0687900-03;Name=Os04t0687900-03;Locus_id=Os04g0687900;Oryzabase Gene Symbol Synonym(s)=OsTLP3%2C OsTLP7%2C OsFbox240%2C Os_F0401;Oryzabase Gene Name Synonym(s)=tubby-like protein 3%2C tubby-like protein 7%2C F-box protein 240;Note=Similar to T24D18.17 protein (Tubby-like protein TULP8).;Transcript_evidence=AK104333 (DDBJ%2C Best hit);ORF_evidence=Q9ST78 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Tubby%2C C-terminal (IPR000007),F-box domain%2C cyclin-like (IPR001810),Tubby%2C C-terminal%2C conserved site (IPR018066),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=001-032-G06;Oryzabase=14705;Expression=AK104333;TENOR=Os04t0687900-03;KEGG=Os04t0687900-03
Chr04	irgsp1_rep	five_prime_UTR	35176194	35176280	.	+	.	Parent=Os04t0687900-03
Chr04	irgsp1_rep	five_prime_UTR	35176621	35176652	.	+	.	Parent=Os04t0687900-03
Chr04	irgsp1_rep	CDS	35176653	35177009	.	+	0	Parent=Os04t0687900-03
Chr04	irgsp1_rep	CDS	35177517	35177604	.	+	0	Parent=Os04t0687900-03
Chr04	irgsp1_rep	CDS	35178450	35178582	.	+	2	Parent=Os04t0687900-03
Chr04	irgsp1_rep	CDS	35178683	35179493	.	+	1	Parent=Os04t0687900-03
Chr04	irgsp1_rep	three_prime_UTR	35179494	35179785	.	+	.	Parent=Os04t0687900-03
Chr04	irgsp1_rep	mRNA	35182099	35183634	.	+	.	ID=Os04t0688000-00;Name=Os04t0688000-00;Locus_id=Os04g0688000;Note=Similar to CAA303718.1 protein.;Transcript_evidence=CT835043 (DDBJ%2C Best hit);ORF_evidence=Q9ST79 (UniProt);InterPro=Protein BYPASS-related (IPR008511);TENOR=Os04t0688000-00;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	35182099	35182130	.	+	.	Parent=Os04t0688000-00
Chr04	irgsp1_rep	CDS	35182131	35183573	.	+	0	Parent=Os04t0688000-00
Chr04	irgsp1_rep	three_prime_UTR	35183574	35183634	.	+	.	Parent=Os04t0688000-00
Chr04	irgsp1_rep	mRNA	35187454	35189187	.	-	.	ID=Os04t0688100-01;Name=Os04t0688100-01;Locus_id=Os04g0688100;Oryzabase Gene Symbol Synonym(s)=prx59%2C OsPRX59;Oryzabase Gene Name Synonym(s)=class III peroxidase 59;Note=Peroxidase (EC 1.11.1.7).;Transcript_evidence=AK102307 (DDBJ%2C Best hit);ORF_evidence=Q5U1N4 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J033090B01;Oryzabase=14584;Expression=AK102307;TENOR=Os04t0688100-01;KEGG=Os04t0688100-01 (EC:1.11.1.7)
Chr04	irgsp1_rep	five_prime_UTR	35188983	35189187	.	-	.	Parent=Os04t0688100-01
Chr04	irgsp1_rep	CDS	35188745	35188982	.	-	0	Parent=Os04t0688100-01
Chr04	irgsp1_rep	CDS	35188406	35188590	.	-	2	Parent=Os04t0688100-01
Chr04	irgsp1_rep	CDS	35187693	35188310	.	-	0	Parent=Os04t0688100-01
Chr04	irgsp1_rep	three_prime_UTR	35187454	35187692	.	-	.	Parent=Os04t0688100-01
Chr04	irgsp1_rep	mRNA	35187443	35189040	.	-	.	ID=Os04t0688100-02;Name=Os04t0688100-02;Locus_id=Os04g0688100;Oryzabase Gene Symbol Synonym(s)=prx59%2C OsPRX59;Oryzabase Gene Name Synonym(s)=class III peroxidase 59;Note=Peroxidase (EC 1.11.1.7).;Transcript_evidence=AK060789 (DDBJ%2C Best hit),AK104833 (DDBJ%2C Best hit);ORF_evidence=Q5U1N4 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=001-033-D09,001-042-B05;Oryzabase=14584;Expression=AK104833;TENOR=Os04t0688100-02;KEGG=Os04t0688100-02 (EC:1.11.1.7);B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	35188983	35189040	.	-	.	Parent=Os04t0688100-02
Chr04	irgsp1_rep	CDS	35188745	35188982	.	-	0	Parent=Os04t0688100-02
Chr04	irgsp1_rep	CDS	35188406	35188590	.	-	2	Parent=Os04t0688100-02
Chr04	irgsp1_rep	CDS	35187693	35188310	.	-	0	Parent=Os04t0688100-02
Chr04	irgsp1_rep	three_prime_UTR	35187443	35187692	.	-	.	Parent=Os04t0688100-02
Chr04	irgsp1_rep	mRNA	35192194	35193779	.	-	.	ID=Os04t0688200-01;Name=Os04t0688200-01;Locus_id=Os04g0688200;Oryzabase Gene Symbol Synonym(s)=prx60%2C POX-1;Oryzabase Gene Name Synonym(s)=class III peroxidase 60%2C peroxidase 1;Note=Similar to Peroxidase (EC 1.11.1.7).;Transcript_evidence=AK103558 (DDBJ%2C Best hit);ORF_evidence=Q9ST81 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J033132H20;Oryzabase=14585;Expression=AK103558;TENOR=Os04t0688200-01;KEGG=Os04t0688200-01 (EC:1.11.1.7)
Chr04	irgsp1_rep	five_prime_UTR	35193678	35193779	.	-	.	Parent=Os04t0688200-01
Chr04	irgsp1_rep	CDS	35193405	35193677	.	-	0	Parent=Os04t0688200-01
Chr04	irgsp1_rep	CDS	35193126	35193311	.	-	0	Parent=Os04t0688200-01
Chr04	irgsp1_rep	CDS	35192457	35193044	.	-	0	Parent=Os04t0688200-01
Chr04	irgsp1_rep	three_prime_UTR	35192194	35192456	.	-	.	Parent=Os04t0688200-01
Chr04	irgsp1_rep	mRNA	35207157	35208610	.	-	.	ID=Os04t0688300-01;Name=Os04t0688300-01;Locus_id=Os04g0688300;Oryzabase Gene Symbol Synonym(s)=prx61;Oryzabase Gene Name Synonym(s)=class III peroxidase 61%2C Peroxidase 2;Note=Haem peroxidase%2C plant/fungal/bacterial family protein.;Transcript_evidence=AK104928 (DDBJ%2C Best hit),AK065090 (DDBJ%2C Best hit);ORF_evidence=Q9ST82 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=001-044-B06,J013001L22;Oryzabase=14586;Expression=AK104928;TENOR=Os04t0688300-01;KEGG=Os04t0688300-01
Chr04	irgsp1_rep	five_prime_UTR	35208522	35208610	.	-	.	Parent=Os04t0688300-01
Chr04	irgsp1_rep	CDS	35208266	35208521	.	-	0	Parent=Os04t0688300-01
Chr04	irgsp1_rep	CDS	35207344	35208110	.	-	2	Parent=Os04t0688300-01
Chr04	irgsp1_rep	three_prime_UTR	35207157	35207343	.	-	.	Parent=Os04t0688300-01
Chr04	irgsp1_rep	mRNA	35215245	35216755	.	-	.	ID=Os04t0688500-01;Name=Os04t0688500-01;Locus_id=Os04g0688500;Oryzabase Gene Symbol Synonym(s)=prx62%2C OsPRX62;Oryzabase Gene Name Synonym(s)=class III peroxidase 62;Note=Peroxidase (EC 1.11.1.7).;Transcript_evidence=AK067667 (DDBJ%2C Best hit);ORF_evidence=Q5U1N1 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J013118D03;Oryzabase=14587;Expression=AK067667;TENOR=Os04t0688500-01;KEGG=Os04t0688500-01 (EC:1.11.1.7)
Chr04	irgsp1_rep	five_prime_UTR	35216626	35216755	.	-	.	Parent=Os04t0688500-01
Chr04	irgsp1_rep	CDS	35216383	35216625	.	-	0	Parent=Os04t0688500-01
Chr04	irgsp1_rep	CDS	35215440	35216255	.	-	0	Parent=Os04t0688500-01
Chr04	irgsp1_rep	three_prime_UTR	35215245	35215439	.	-	.	Parent=Os04t0688500-01
Chr04	irgsp1_rep	mRNA	35221653	35223996	.	-	.	ID=Os04t0688600-01;Name=Os04t0688600-01;Locus_id=Os04g0688600;Oryzabase Gene Symbol Synonym(s)=prx63%2C OsPRX63;Oryzabase Gene Name Synonym(s)=class III peroxidase 63;Note=Peroxidase (EC 1.11.1.7).;Transcript_evidence=AK070680 (DDBJ%2C Best hit);ORF_evidence=Q5U1N0 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J023060N16;Oryzabase=14588;Expression=AK070680;TENOR=Os04t0688600-01;KEGG=Os04t0688600-01 (EC:1.11.1.7)
Chr04	irgsp1_rep	five_prime_UTR	35223974	35223996	.	-	.	Parent=Os04t0688600-01
Chr04	irgsp1_rep	CDS	35223745	35223973	.	-	0	Parent=Os04t0688600-01
Chr04	irgsp1_rep	CDS	35222876	35223654	.	-	2	Parent=Os04t0688600-01
Chr04	irgsp1_rep	three_prime_UTR	35221653	35222875	.	-	.	Parent=Os04t0688600-01
Chr04	irgsp1_rep	mRNA	35245424	35246736	.	-	.	ID=Os04t0689000-01;Name=Os04t0689000-01;Locus_id=Os04g0689000;Oryzabase Gene Symbol Synonym(s)=prx64;Oryzabase Gene Name Synonym(s)=class III peroxidase 64;Note=Similar to Peroxidase (EC 1.11.1.7).;Transcript_evidence=AK073360 (DDBJ%2C Best hit);ORF_evidence=Q00RN3 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J033030A01;Oryzabase=14589;Expression=AK073360;TENOR=Os04t0689000-01;KEGG=Os04t0689000-01 (EC:1.11.1.7)
Chr04	irgsp1_rep	five_prime_UTR	35246672	35246736	.	-	.	Parent=Os04t0689000-01
Chr04	irgsp1_rep	CDS	35246443	35246671	.	-	0	Parent=Os04t0689000-01
Chr04	irgsp1_rep	CDS	35245581	35246368	.	-	2	Parent=Os04t0689000-01
Chr04	irgsp1_rep	three_prime_UTR	35245424	35245580	.	-	.	Parent=Os04t0689000-01
Chr04	irgsp1_rep	mRNA	35267299	35270253	.	-	.	ID=Os04t0689300-01;Name=Os04t0689300-01;Locus_id=Os04g0689300;Note=PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain domain containing protein.;Transcript_evidence=AK100293 (DDBJ%2C Best hit);ORF_evidence=Q00RM9 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: intracellular signal transduction (GO:0035556),Molecular Function: phospholipase C activity (GO:0004629),Molecular Function: phosphoric diester hydrolase activity (GO:0008081);InterPro=Phospholipase C%2C phosphatidylinositol-specific %2C X domain (IPR000909),PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain (IPR017946);NIAS_FLcDNA=J023075P06;Expression=AK100293;TENOR=Os04t0689300-01;KEGG=Os04t0689300-01
Chr04	irgsp1_rep	five_prime_UTR	35270203	35270253	.	-	.	Parent=Os04t0689300-01
Chr04	irgsp1_rep	CDS	35269984	35270202	.	-	0	Parent=Os04t0689300-01
Chr04	irgsp1_rep	CDS	35269771	35269908	.	-	0	Parent=Os04t0689300-01
Chr04	irgsp1_rep	CDS	35268638	35268736	.	-	0	Parent=Os04t0689300-01
Chr04	irgsp1_rep	CDS	35268251	35268551	.	-	0	Parent=Os04t0689300-01
Chr04	irgsp1_rep	CDS	35267939	35268162	.	-	2	Parent=Os04t0689300-01
Chr04	irgsp1_rep	CDS	35267787	35267873	.	-	0	Parent=Os04t0689300-01
Chr04	irgsp1_rep	CDS	35267374	35267712	.	-	0	Parent=Os04t0689300-01
Chr04	irgsp1_rep	three_prime_UTR	35267299	35267373	.	-	.	Parent=Os04t0689300-01
Chr04	irgsp1_rep	mRNA	35271050	35276776	.	+	.	ID=Os04t0689400-01;Name=Os04t0689400-01;Locus_id=Os04g0689400;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK102046 (DDBJ%2C Best hit);ORF_evidence=Q00RM8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033081N02;TENOR=Os04t0689400-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	35271050	35271107	.	+	.	Parent=Os04t0689400-01
Chr04	irgsp1_rep	CDS	35271108	35271204	.	+	0	Parent=Os04t0689400-01
Chr04	irgsp1_rep	CDS	35271573	35272124	.	+	2	Parent=Os04t0689400-01
Chr04	irgsp1_rep	CDS	35272200	35272484	.	+	2	Parent=Os04t0689400-01
Chr04	irgsp1_rep	CDS	35272911	35273172	.	+	2	Parent=Os04t0689400-01
Chr04	irgsp1_rep	CDS	35273254	35273306	.	+	1	Parent=Os04t0689400-01
Chr04	irgsp1_rep	CDS	35273396	35273463	.	+	2	Parent=Os04t0689400-01
Chr04	irgsp1_rep	CDS	35275207	35275296	.	+	0	Parent=Os04t0689400-01
Chr04	irgsp1_rep	CDS	35275378	35275462	.	+	0	Parent=Os04t0689400-01
Chr04	irgsp1_rep	CDS	35275698	35276227	.	+	2	Parent=Os04t0689400-01
Chr04	irgsp1_rep	three_prime_UTR	35276228	35276776	.	+	.	Parent=Os04t0689400-01
Chr04	irgsp1_rep	mRNA	35277706	35279080	.	+	.	ID=Os04t0689500-01;Name=Os04t0689500-01;Locus_id=Os04g0689500;Note=Similar to H0814G11.12 protein.;Transcript_evidence=AK068260 (DDBJ%2C Best hit);ORF_evidence=Q00RM8 (UniProt);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=J013147H21;Expression=AK068260;TENOR=Os04t0689500-01;KEGG=Os04t0689500-01
Chr04	irgsp1_rep	five_prime_UTR	35277706	35277718	.	+	.	Parent=Os04t0689500-01
Chr04	irgsp1_rep	CDS	35277719	35278315	.	+	0	Parent=Os04t0689500-01
Chr04	irgsp1_rep	CDS	35278403	35278876	.	+	0	Parent=Os04t0689500-01
Chr04	irgsp1_rep	three_prime_UTR	35278877	35279080	.	+	.	Parent=Os04t0689500-01
Chr04	irgsp1_rep	mRNA	35277743	35279151	.	+	.	ID=Os04t0689500-02;Name=Os04t0689500-02;Locus_id=Os04g0689500;Note=Similar to H0814G11.12 protein.;Transcript_evidence=AK060983 (DDBJ%2C Best hit);ORF_evidence=Q00RM8 (UniProt);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=006-203-A12;Expression=AK060983;TENOR=Os04t0689500-02;KEGG=Os04t0689500-02
Chr04	irgsp1_rep	CDS	35277743	35278315	.	+	0	Parent=Os04t0689500-02
Chr04	irgsp1_rep	CDS	35278403	35278876	.	+	0	Parent=Os04t0689500-02
Chr04	irgsp1_rep	three_prime_UTR	35278877	35279151	.	+	.	Parent=Os04t0689500-02
Chr04	irgsp1_rep	mRNA	35280703	35282692	.	+	.	ID=Os04t0689700-01;Name=Os04t0689700-01;Locus_id=Os04g0689700;Note=RNA recognition motif%2C RNP-1 domain containing protein.;Transcript_evidence=AK066225 (DDBJ%2C Best hit);ORF_evidence=Q9ST90 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013051K19;Expression=AK066225;TENOR=Os04t0689700-01;KEGG=Os04t0689700-01
Chr04	irgsp1_rep	five_prime_UTR	35280703	35281045	.	+	.	Parent=Os04t0689700-01
Chr04	irgsp1_rep	CDS	35281046	35281504	.	+	0	Parent=Os04t0689700-01
Chr04	irgsp1_rep	CDS	35281940	35282095	.	+	0	Parent=Os04t0689700-01
Chr04	irgsp1_rep	three_prime_UTR	35282096	35282436	.	+	.	Parent=Os04t0689700-01
Chr04	irgsp1_rep	three_prime_UTR	35282528	35282692	.	+	.	Parent=Os04t0689700-01
Chr04	irgsp1_rep	mRNA	35283206	35286176	.	+	.	ID=Os04t0689800-00;Name=Os04t0689800-00;Locus_id=Os04g0689800;Note=Similar to CAA30376.1 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q9ST91 (UniProt);TENOR=Os04t0689800-00
Chr04	irgsp1_rep	CDS	35283206	35283569	.	+	0	Parent=Os04t0689800-00
Chr04	irgsp1_rep	CDS	35284665	35284885	.	+	2	Parent=Os04t0689800-00
Chr04	irgsp1_rep	CDS	35285514	35286176	.	+	0	Parent=Os04t0689800-00
Chr04	irgsp1_rep	mRNA	35287781	35289153	.	+	.	ID=Os04t0689900-01;Name=Os04t0689900-01;Locus_id=Os04g0689900;Oryzabase Gene Symbol Synonym(s)=OsPR5%2C PR5;Oryzabase Gene Name Synonym(s)=pathogenesis-related gene 5;Note=Similar to Pathogenesis-related protein 5 precursor (PR-5).;Transcript_evidence=AK061001 (DDBJ%2C Best hit);ORF_evidence=Q9ST91 (UniProt);InterPro=Thaumatin%2C pathogenesis-related (IPR001938);NIAS_FLcDNA=006-203-F12;Oryzabase=22050;Expression=AK061001;TENOR=Os04t0689900-01;KEGG=Os04t0689900-01
Chr04	irgsp1_rep	CDS	35287781	35288583	.	+	0	Parent=Os04t0689900-01
Chr04	irgsp1_rep	CDS	35288666	35288786	.	+	1	Parent=Os04t0689900-01
Chr04	irgsp1_rep	three_prime_UTR	35288787	35289153	.	+	.	Parent=Os04t0689900-01
Chr04	irgsp1_rep	mRNA	35297676	35300217	.	+	.	ID=Os04t0690100-01;Name=Os04t0690100-01;Locus_id=Os04g0690100;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK099856 (DDBJ%2C Best hit);ORF_evidence=Q9ST93 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J013110K19;Expression=AK099856;TENOR=Os04t0690100-01;KEGG=Os04t0690100-01
Chr04	irgsp1_rep	five_prime_UTR	35297676	35297719	.	+	.	Parent=Os04t0690100-01
Chr04	irgsp1_rep	CDS	35297720	35298596	.	+	0	Parent=Os04t0690100-01
Chr04	irgsp1_rep	CDS	35299459	35300078	.	+	2	Parent=Os04t0690100-01
Chr04	irgsp1_rep	three_prime_UTR	35300079	35300217	.	+	.	Parent=Os04t0690100-01
Chr04	irgsp1_rep	mRNA	35297937	35300310	.	+	.	ID=Os04t0690100-02;Name=Os04t0690100-02;Locus_id=Os04g0690100;Note=Similar to H0814G11.16 protein.;Transcript_evidence=AK105834 (DDBJ%2C Best hit);ORF_evidence=Q00RM4 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087);NIAS_FLcDNA=001-203-E10;Expression=AK105834;TENOR=Os04t0690100-02;KEGG=Os04t0690100-02
Chr04	irgsp1_rep	five_prime_UTR	35297937	35297938	.	+	.	Parent=Os04t0690100-02
Chr04	irgsp1_rep	CDS	35297939	35298596	.	+	0	Parent=Os04t0690100-02
Chr04	irgsp1_rep	CDS	35299459	35300078	.	+	2	Parent=Os04t0690100-02
Chr04	irgsp1_rep	three_prime_UTR	35300079	35300310	.	+	.	Parent=Os04t0690100-02
Chr04	irgsp1_rep	mRNA	35310316	35315659	.	+	.	ID=Os04t0690300-01;Name=Os04t0690300-01;Locus_id=Os04g0690300;Note=Similar to H0814G11.17 protein.;Transcript_evidence=AK289176 (DDBJ%2C Best hit);ORF_evidence=Q00RM3 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide TPR-1 (IPR001440),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J100022F13;TENOR=Os04t0690300-01;KEGG=Os04t0690300-01
Chr04	irgsp1_rep	five_prime_UTR	35310316	35310381	.	+	.	Parent=Os04t0690300-01
Chr04	irgsp1_rep	CDS	35310382	35310457	.	+	0	Parent=Os04t0690300-01
Chr04	irgsp1_rep	CDS	35311047	35311294	.	+	2	Parent=Os04t0690300-01
Chr04	irgsp1_rep	CDS	35311582	35311615	.	+	0	Parent=Os04t0690300-01
Chr04	irgsp1_rep	CDS	35311795	35311931	.	+	2	Parent=Os04t0690300-01
Chr04	irgsp1_rep	CDS	35312232	35312298	.	+	0	Parent=Os04t0690300-01
Chr04	irgsp1_rep	CDS	35312521	35312620	.	+	2	Parent=Os04t0690300-01
Chr04	irgsp1_rep	CDS	35313251	35313414	.	+	1	Parent=Os04t0690300-01
Chr04	irgsp1_rep	CDS	35313899	35313945	.	+	2	Parent=Os04t0690300-01
Chr04	irgsp1_rep	CDS	35314053	35314100	.	+	0	Parent=Os04t0690300-01
Chr04	irgsp1_rep	CDS	35314339	35314852	.	+	0	Parent=Os04t0690300-01
Chr04	irgsp1_rep	CDS	35315348	35315358	.	+	2	Parent=Os04t0690300-01
Chr04	irgsp1_rep	three_prime_UTR	35315359	35315659	.	+	.	Parent=Os04t0690300-01
Chr04	irgsp1_rep	mRNA	35317098	35323984	.	+	.	ID=Os04t0690400-01;Name=Os04t0690400-01;Locus_id=Os04g0690400;Note=Similar to H0814G11.18 protein.;Transcript_evidence=AK102981 (DDBJ%2C Best hit),AK103240 (DDBJ%2C Best hit);ORF_evidence=Q00RM2 (UniProt);NIAS_FLcDNA=J033115O13,J033123H04;TENOR=Os04t0690400-01
Chr04	irgsp1_rep	five_prime_UTR	35317098	35317364	.	+	.	Parent=Os04t0690400-01
Chr04	irgsp1_rep	CDS	35317365	35319521	.	+	0	Parent=Os04t0690400-01
Chr04	irgsp1_rep	three_prime_UTR	35319522	35319779	.	+	.	Parent=Os04t0690400-01
Chr04	irgsp1_rep	three_prime_UTR	35320015	35320077	.	+	.	Parent=Os04t0690400-01
Chr04	irgsp1_rep	three_prime_UTR	35323280	35323984	.	+	.	Parent=Os04t0690400-01
Chr04	irgsp1_rep	mRNA	35320440	35321204	.	+	.	ID=Os04t0690451-00;Name=Os04t0690451-00;Locus_id=Os04g0690451;Note=Hypothetical gene.;Transcript_evidence=CT836480 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os04t0690451-00;KEGG=Os04t0690451-00
Chr04	irgsp1_rep	five_prime_UTR	35320440	35320858	.	+	.	Parent=Os04t0690451-00
Chr04	irgsp1_rep	CDS	35320859	35321074	.	+	0	Parent=Os04t0690451-00
Chr04	irgsp1_rep	three_prime_UTR	35321075	35321204	.	+	.	Parent=Os04t0690451-00
Chr04	irgsp1_rep	mRNA	35327019	35328335	.	+	.	ID=Os04t0690500-01;Name=Os04t0690500-01;Locus_id=Os04g0690500;Note=Similar to CAA30371.1 protein (Fragment).;Transcript_evidence=AK071887 (DDBJ%2C Best hit);ORF_evidence=Q9ST96 (UniProt);NIAS_FLcDNA=J013047N20;Expression=AK071887;TENOR=Os04t0690500-01;KEGG=Os04t0690500-01
Chr04	irgsp1_rep	five_prime_UTR	35327019	35327328	.	+	.	Parent=Os04t0690500-01
Chr04	irgsp1_rep	CDS	35327329	35327656	.	+	0	Parent=Os04t0690500-01
Chr04	irgsp1_rep	CDS	35327766	35328121	.	+	2	Parent=Os04t0690500-01
Chr04	irgsp1_rep	three_prime_UTR	35328122	35328335	.	+	.	Parent=Os04t0690500-01
Chr04	irgsp1_rep	mRNA	35327091	35328212	.	+	.	ID=Os04t0690500-02;Name=Os04t0690500-02;Locus_id=Os04g0690500;Note=Similar to CAA30371.1 protein (Fragment).;Transcript_evidence=AK104290 (DDBJ%2C Best hit),AK059830 (DDBJ%2C Best hit);ORF_evidence=Q9ST96 (UniProt);NIAS_FLcDNA=001-007-E09,006-206-A03;Expression=AK104290;TENOR=Os04t0690500-02;KEGG=Os04t0690500-02
Chr04	irgsp1_rep	five_prime_UTR	35327091	35327328	.	+	.	Parent=Os04t0690500-02
Chr04	irgsp1_rep	CDS	35327329	35327656	.	+	0	Parent=Os04t0690500-02
Chr04	irgsp1_rep	CDS	35327766	35328121	.	+	2	Parent=Os04t0690500-02
Chr04	irgsp1_rep	three_prime_UTR	35328122	35328212	.	+	.	Parent=Os04t0690500-02
Chr04	irgsp1_rep	mRNA	35327165	35328327	.	+	.	ID=Os04t0690500-03;Name=Os04t0690500-03;Locus_id=Os04g0690500;Note=Similar to CAA30371.1 protein (Fragment).;Transcript_evidence=AK061031 (DDBJ%2C Best hit);ORF_evidence=Q9ST96 (UniProt);NIAS_FLcDNA=006-204-H02;Expression=AK061031;TENOR=Os04t0690500-03;KEGG=Os04t0690500-03
Chr04	irgsp1_rep	five_prime_UTR	35327165	35327328	.	+	.	Parent=Os04t0690500-03
Chr04	irgsp1_rep	CDS	35327329	35327656	.	+	0	Parent=Os04t0690500-03
Chr04	irgsp1_rep	CDS	35327766	35328121	.	+	2	Parent=Os04t0690500-03
Chr04	irgsp1_rep	three_prime_UTR	35328122	35328327	.	+	.	Parent=Os04t0690500-03
Chr04	irgsp1_rep	mRNA	35327218	35328615	.	+	.	ID=Os04t0690500-04;Name=Os04t0690500-04;Locus_id=Os04g0690500;Note=Similar to CAA30371.1 protein (Fragment).;Transcript_evidence=AK105853 (DDBJ%2C Best hit);ORF_evidence=Q9ST96 (UniProt);NIAS_FLcDNA=001-203-H02;Expression=AK105853;TENOR=Os04t0690500-04;KEGG=Os04t0690500-04
Chr04	irgsp1_rep	five_prime_UTR	35327218	35327328	.	+	.	Parent=Os04t0690500-04
Chr04	irgsp1_rep	CDS	35327329	35327656	.	+	0	Parent=Os04t0690500-04
Chr04	irgsp1_rep	CDS	35327766	35328121	.	+	2	Parent=Os04t0690500-04
Chr04	irgsp1_rep	three_prime_UTR	35328122	35328615	.	+	.	Parent=Os04t0690500-04
Chr04	irgsp1_rep	mRNA	35329565	35333095	.	-	.	ID=Os04t0690600-01;Name=Os04t0690600-01;Locus_id=Os04g0690600;CGSNL Gene Symbol=ARF13;CGSNL Gene Name=AUXIN RESPONSE FACTOR 13;Oryzabase Gene Symbol Synonym(s)=OsARF13%2C OsARF12;Oryzabase Gene Name Synonym(s)=auxin response factor-13%2C auxin response factor 13;Note=Similar to Auxin response factor 13.;Transcript_evidence=AK109449 (DDBJ%2C Best hit);ORF_evidence=Q7XSS9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: response to hormone stimulus (GO:0009725),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),Auxin response factor (IPR010525),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=001-113-A09;Oryzabase=10010;TENOR=Os04t0690600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	35333011	35333095	.	-	.	Parent=Os04t0690600-01
Chr04	irgsp1_rep	CDS	35332012	35333010	.	-	0	Parent=Os04t0690600-01
Chr04	irgsp1_rep	CDS	35330641	35331231	.	-	0	Parent=Os04t0690600-01
Chr04	irgsp1_rep	three_prime_UTR	35330612	35330640	.	-	.	Parent=Os04t0690600-01
Chr04	irgsp1_rep	three_prime_UTR	35329565	35329897	.	-	.	Parent=Os04t0690600-01
Chr04	irgsp1_rep	mRNA	35337067	35338179	.	+	.	ID=Os04t0690800-01;Name=Os04t0690800-01;Locus_id=Os04g0690800;RAP-DB Gene Symbol Synonym(s)=PSBS2%2C PsbS%2C OsPsbS2%2C PSII-S;RAP-DB Gene Name Synonym(s)=PHOTOSYSTEM II SUBUNIT%2C PSII subunit PsbS%2C photosystem II subunit PsbS%2C rice PsbS homologue 2%2C chlorophyll-binding 22 kDa protein of Photosystem II;CGSNL Gene Symbol=PSBS2;CGSNL Gene Name=PHOTOSYSTEM II SUBUNIT;Oryzabase Gene Symbol Synonym(s)=PsbS%2C OsPsbS2;Oryzabase Gene Name Synonym(s)=PSII subunit PsbS%2C photosystem II subunit PsbS%2C rice  PsbS homologue 2%2C chlorophyll-binding 22 kDa protein of Photosystem II;Note=22-kDa Photosystem II protein%2C Photoprotection;Transcript_evidence=AK071638,D84392;ORF_evidence=Q40716;InterPro=Chlorophyll A-B binding protein (IPR022796),Chlorophyll a/b binding protein domain (IPR023329);NIAS_FLcDNA=J023101I15;Manual Curation=November 10%2C 2014;Literature_PMID=9055819,21804028,25342550;Oryzabase=9623;TENOR=Os04t0690800-01;KEGG=Os04t0690800-01
Chr04	irgsp1_rep	five_prime_UTR	35337067	35337211	.	+	.	Parent=Os04t0690800-01
Chr04	irgsp1_rep	CDS	35337212	35337976	.	+	0	Parent=Os04t0690800-01
Chr04	irgsp1_rep	three_prime_UTR	35337977	35338179	.	+	.	Parent=Os04t0690800-01
Chr04	irgsp1_rep	mRNA	35338920	35339798	.	+	.	ID=Os04t0690900-01;Name=Os04t0690900-01;Locus_id=Os04g0690900;Note=Similar to H0323C08.15 protein.;Transcript_evidence=AK241685 (DDBJ%2C Best hit);ORF_evidence=Q25A34 (UniProt);NIAS_FLcDNA=J065194D12;TENOR=Os04t0690900-01;KEGG=Os04t0690900-01
Chr04	irgsp1_rep	five_prime_UTR	35338920	35339215	.	+	.	Parent=Os04t0690900-01
Chr04	irgsp1_rep	CDS	35339216	35339491	.	+	0	Parent=Os04t0690900-01
Chr04	irgsp1_rep	three_prime_UTR	35339492	35339798	.	+	.	Parent=Os04t0690900-01
Chr04	irgsp1_rep	mRNA	35340013	35340799	.	-	.	ID=Os04t0690932-01;Name=Os04t0690932-01;Locus_id=Os04g0690932;Note=Hypothetical gene.;Transcript_evidence=AK062616 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-105-B03;Expression=AK062616;TENOR=Os04t0690932-01;KEGG=Os04t0690932-01
Chr04	irgsp1_rep	five_prime_UTR	35340798	35340799	.	-	.	Parent=Os04t0690932-01
Chr04	irgsp1_rep	CDS	35340447	35340797	.	-	0	Parent=Os04t0690932-01
Chr04	irgsp1_rep	three_prime_UTR	35340013	35340446	.	-	.	Parent=Os04t0690932-01
Chr04	irgsp1_rep	mRNA	35340197	35341143	.	+	.	ID=Os04t0691000-01;Name=Os04t0691000-01;Locus_id=Os04g0691000;Note=Conserved hypothetical protein.;Transcript_evidence=AK063241 (DDBJ%2C Best hit);ORF_evidence=NP_001043476.1 (RefSeq);NIAS_FLcDNA=001-112-G04;Expression=AK063241;TENOR=Os04t0691000-01;KEGG=Os04t0691000-01
Chr04	irgsp1_rep	five_prime_UTR	35340197	35340230	.	+	.	Parent=Os04t0691000-01
Chr04	irgsp1_rep	CDS	35340231	35340857	.	+	0	Parent=Os04t0691000-01
Chr04	irgsp1_rep	three_prime_UTR	35340858	35341143	.	+	.	Parent=Os04t0691000-01
Chr04	irgsp1_rep	mRNA	35344338	35346212	.	+	.	ID=Os04t0691100-01;Name=Os04t0691100-01;Locus_id=Os04g0691100;RAP-DB Gene Symbol Synonym(s)=SAPK5%2C OsSAPK5;RAP-DB Gene Name Synonym(s)=STRESS/ABA-ACTIVATED PROTEIN KINASE 5%2C stress/ABA-activated protein kinase 5%2C Stress-Activated Protein Kinase 5;CGSNL Gene Symbol=SAPK5;CGSNL Gene Name=STRESS/ABA-ACTIVATED PROTEIN KINASE 5;Oryzabase Gene Symbol Synonym(s)=OsSAPK5;Oryzabase Gene Name Synonym(s)=stress/ABA-activated protein kinase 5%2C Stress-Activated Protein Kinase 5;Note=Serine/threonine protein kinase%2C Hyperosmotic stress response;Transcript_evidence=AB125306,AK100269;ORF_evidence=Q7XKA8;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine/threonine/dual specificity protein kinase%2C catalytic  domain (IPR002290),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J023065E10;Manual Curation=December 14%2C 2015;Literature_PMID=15084714;Oryzabase=9813;Expression=AK100269;TENOR=Os04t0691100-01;KEGG=Os04t0691100-01 (EC:2.7.1.37, EC:2.7.11.11)
Chr04	irgsp1_rep	five_prime_UTR	35344338	35344501	.	+	.	Parent=Os04t0691100-01
Chr04	irgsp1_rep	CDS	35344502	35344621	.	+	0	Parent=Os04t0691100-01
Chr04	irgsp1_rep	CDS	35344698	35345219	.	+	0	Parent=Os04t0691100-01
Chr04	irgsp1_rep	CDS	35345303	35345401	.	+	0	Parent=Os04t0691100-01
Chr04	irgsp1_rep	CDS	35345483	35345854	.	+	0	Parent=Os04t0691100-01
Chr04	irgsp1_rep	three_prime_UTR	35345855	35346212	.	+	.	Parent=Os04t0691100-01
Chr04	irgsp1_rep	mRNA	35347095	35350031	.	-	.	ID=Os04t0691200-00;Name=Os04t0691200-00;Locus_id=Os04g0691200;Note=Similar to predicted protein.;Transcript_evidence=AK369781 (DDBJ);ORF_evidence=XP_002869342.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943);TENOR=Os04t0691200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	35348475	35350031	.	-	0	Parent=Os04t0691200-00
Chr04	irgsp1_rep	CDS	35347463	35347807	.	-	0	Parent=Os04t0691200-00
Chr04	irgsp1_rep	three_prime_UTR	35347095	35347462	.	-	.	Parent=Os04t0691200-00
Chr04	irgsp1_rep	mRNA	35358602	35362522	.	-	.	ID=Os04t0691300-00;Name=Os04t0691300-00;Locus_id=Os04g0691300;CGSNL Gene Symbol=NAC84;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 84;Oryzabase Gene Symbol Synonym(s)=ONAC084%2C ONAC84%2C DLN128%2C OsDLN128;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 084%2C NAC domain-containing protein 84%2C DLN repressor 128%2C DLN motif protein 128;Note=Similar to ANAC030.;Transcript_evidence=AK334647 (DDBJ);ORF_evidence=NP_001148332.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);Oryzabase=15851;TENOR=Os04t0691300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	35362414	35362522	.	-	.	Parent=Os04t0691300-00
Chr04	irgsp1_rep	CDS	35362412	35362413	.	-	0	Parent=Os04t0691300-00
Chr04	irgsp1_rep	CDS	35358602	35359460	.	-	1	Parent=Os04t0691300-00
Chr04	irgsp1_rep	mRNA	35360283	35360969	.	+	.	ID=Os04t0691366-00;Name=Os04t0691366-00;Locus_id=Os04g0691366;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Similar to POT family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B6SXJ7 (UniProt);Oryzabase=23658;TENOR=Os04t0691366-00
Chr04	irgsp1_rep	CDS	35360283	35360409	.	+	0	Parent=Os04t0691366-00
Chr04	irgsp1_rep	CDS	35360506	35360723	.	+	2	Parent=Os04t0691366-00
Chr04	irgsp1_rep	CDS	35360925	35360969	.	+	0	Parent=Os04t0691366-00
Chr04	irgsp1_rep	mRNA	35362185	35363363	.	+	.	ID=Os04t0691400-00;Name=Os04t0691400-00;Locus_id=Os04g0691400;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Similar to POT family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B6SXJ7 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);Oryzabase=23658;TENOR=Os04t0691400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	CDS	35362185	35363363	.	+	0	Parent=Os04t0691400-00
Chr04	irgsp1_rep	mRNA	35360311	35360782	.	-	.	ID=Os04t0691433-00;Name=Os04t0691433-00;Locus_id=Os04g0691433;Note=Non-protein coding transcript.;Transcript_evidence=EU946594 (DDBJ);ORF_evidence=NONE;TENOR=Os04t0691433-00
Chr04	irgsp1_rep	exon	35360311	35360782	.	-	.	Parent=Os04t0691433-00
Chr04	irgsp1_rep	mRNA	35369118	35369445	.	-	.	ID=Os04t0691466-00;Name=Os04t0691466-00;Locus_id=Os04g0691466;Note=Hypothetical gene.;Transcript_evidence=EU949821 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0691466-00;KEGG=Os04t0691466-00
Chr04	irgsp1_rep	five_prime_UTR	35369402	35369445	.	-	.	Parent=Os04t0691466-00
Chr04	irgsp1_rep	CDS	35369150	35369401	.	-	0	Parent=Os04t0691466-00
Chr04	irgsp1_rep	three_prime_UTR	35369118	35369149	.	-	.	Parent=Os04t0691466-00
Chr04	irgsp1_rep	mRNA	35369085	35381224	.	+	.	ID=Os04t0691500-01;Name=Os04t0691500-01;Locus_id=Os04g0691500;Note=Similar to predicted protein.;Transcript_evidence=AK069073 (DDBJ%2C Best hit);ORF_evidence=NP_001031359.1 (RefSeq);GO=Biological Process: intracellular protein transport (GO:0006886),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515),Molecular Function: protein transporter activity (GO:0008565);InterPro=HEAT (IPR000357),Importin-beta%2C N-terminal (IPR001494),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023005B05;TENOR=Os04t0691500-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	35369085	35369209	.	+	.	Parent=Os04t0691500-01
Chr04	irgsp1_rep	CDS	35369210	35369389	.	+	0	Parent=Os04t0691500-01
Chr04	irgsp1_rep	CDS	35370606	35370893	.	+	0	Parent=Os04t0691500-01
Chr04	irgsp1_rep	CDS	35371063	35371152	.	+	0	Parent=Os04t0691500-01
Chr04	irgsp1_rep	CDS	35371361	35371438	.	+	0	Parent=Os04t0691500-01
Chr04	irgsp1_rep	CDS	35371512	35371592	.	+	0	Parent=Os04t0691500-01
Chr04	irgsp1_rep	CDS	35372174	35372224	.	+	0	Parent=Os04t0691500-01
Chr04	irgsp1_rep	CDS	35372722	35372807	.	+	0	Parent=Os04t0691500-01
Chr04	irgsp1_rep	CDS	35373043	35373109	.	+	1	Parent=Os04t0691500-01
Chr04	irgsp1_rep	CDS	35373202	35373258	.	+	0	Parent=Os04t0691500-01
Chr04	irgsp1_rep	CDS	35373346	35373375	.	+	0	Parent=Os04t0691500-01
Chr04	irgsp1_rep	CDS	35373650	35373709	.	+	0	Parent=Os04t0691500-01
Chr04	irgsp1_rep	CDS	35373810	35373926	.	+	0	Parent=Os04t0691500-01
Chr04	irgsp1_rep	CDS	35374664	35374777	.	+	0	Parent=Os04t0691500-01
Chr04	irgsp1_rep	CDS	35374942	35375040	.	+	0	Parent=Os04t0691500-01
Chr04	irgsp1_rep	CDS	35375446	35375571	.	+	0	Parent=Os04t0691500-01
Chr04	irgsp1_rep	CDS	35375648	35375722	.	+	0	Parent=Os04t0691500-01
Chr04	irgsp1_rep	CDS	35375832	35375903	.	+	0	Parent=Os04t0691500-01
Chr04	irgsp1_rep	CDS	35376041	35376151	.	+	0	Parent=Os04t0691500-01
Chr04	irgsp1_rep	CDS	35376634	35376717	.	+	0	Parent=Os04t0691500-01
Chr04	irgsp1_rep	CDS	35378023	35378130	.	+	0	Parent=Os04t0691500-01
Chr04	irgsp1_rep	CDS	35379081	35379182	.	+	0	Parent=Os04t0691500-01
Chr04	irgsp1_rep	CDS	35379267	35379329	.	+	0	Parent=Os04t0691500-01
Chr04	irgsp1_rep	CDS	35379398	35379565	.	+	0	Parent=Os04t0691500-01
Chr04	irgsp1_rep	three_prime_UTR	35379566	35379846	.	+	.	Parent=Os04t0691500-01
Chr04	irgsp1_rep	three_prime_UTR	35379937	35380061	.	+	.	Parent=Os04t0691500-01
Chr04	irgsp1_rep	three_prime_UTR	35380125	35380322	.	+	.	Parent=Os04t0691500-01
Chr04	irgsp1_rep	three_prime_UTR	35380399	35380458	.	+	.	Parent=Os04t0691500-01
Chr04	irgsp1_rep	three_prime_UTR	35380559	35381224	.	+	.	Parent=Os04t0691500-01
Chr04	irgsp1_rep	mRNA	35369114	35381225	.	+	.	ID=Os04t0691500-02;Name=Os04t0691500-02;Locus_id=Os04g0691500;Note=Similar to TRN1 (TRANSPORTIN 1)%3B protein transporter.;Transcript_evidence=AK100077 (DDBJ%2C Best hit);ORF_evidence=NP_001031359.1 (RefSeq);GO=Biological Process: intracellular protein transport (GO:0006886),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515),Molecular Function: protein transporter activity (GO:0008565);InterPro=HEAT (IPR000357),Importin-beta%2C N-terminal (IPR001494),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023001F11;TENOR=Os04t0691500-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	35369114	35369209	.	+	.	Parent=Os04t0691500-02
Chr04	irgsp1_rep	CDS	35369210	35369389	.	+	0	Parent=Os04t0691500-02
Chr04	irgsp1_rep	CDS	35370606	35370893	.	+	0	Parent=Os04t0691500-02
Chr04	irgsp1_rep	CDS	35371063	35371152	.	+	0	Parent=Os04t0691500-02
Chr04	irgsp1_rep	CDS	35371361	35371438	.	+	0	Parent=Os04t0691500-02
Chr04	irgsp1_rep	CDS	35371512	35371592	.	+	0	Parent=Os04t0691500-02
Chr04	irgsp1_rep	CDS	35372174	35372224	.	+	0	Parent=Os04t0691500-02
Chr04	irgsp1_rep	CDS	35372722	35372807	.	+	0	Parent=Os04t0691500-02
Chr04	irgsp1_rep	CDS	35373043	35373109	.	+	1	Parent=Os04t0691500-02
Chr04	irgsp1_rep	CDS	35373202	35373258	.	+	0	Parent=Os04t0691500-02
Chr04	irgsp1_rep	CDS	35373346	35373375	.	+	0	Parent=Os04t0691500-02
Chr04	irgsp1_rep	CDS	35373650	35373709	.	+	0	Parent=Os04t0691500-02
Chr04	irgsp1_rep	CDS	35373810	35373926	.	+	0	Parent=Os04t0691500-02
Chr04	irgsp1_rep	CDS	35374664	35374777	.	+	0	Parent=Os04t0691500-02
Chr04	irgsp1_rep	CDS	35374942	35375040	.	+	0	Parent=Os04t0691500-02
Chr04	irgsp1_rep	CDS	35375446	35375658	.	+	0	Parent=Os04t0691500-02
Chr04	irgsp1_rep	three_prime_UTR	35375659	35375722	.	+	.	Parent=Os04t0691500-02
Chr04	irgsp1_rep	three_prime_UTR	35375832	35375903	.	+	.	Parent=Os04t0691500-02
Chr04	irgsp1_rep	three_prime_UTR	35376041	35376151	.	+	.	Parent=Os04t0691500-02
Chr04	irgsp1_rep	three_prime_UTR	35376634	35376717	.	+	.	Parent=Os04t0691500-02
Chr04	irgsp1_rep	three_prime_UTR	35378023	35378130	.	+	.	Parent=Os04t0691500-02
Chr04	irgsp1_rep	three_prime_UTR	35379081	35379182	.	+	.	Parent=Os04t0691500-02
Chr04	irgsp1_rep	three_prime_UTR	35379267	35379329	.	+	.	Parent=Os04t0691500-02
Chr04	irgsp1_rep	three_prime_UTR	35379398	35379472	.	+	.	Parent=Os04t0691500-02
Chr04	irgsp1_rep	three_prime_UTR	35379775	35379846	.	+	.	Parent=Os04t0691500-02
Chr04	irgsp1_rep	three_prime_UTR	35379937	35380061	.	+	.	Parent=Os04t0691500-02
Chr04	irgsp1_rep	three_prime_UTR	35380125	35380176	.	+	.	Parent=Os04t0691500-02
Chr04	irgsp1_rep	three_prime_UTR	35380254	35380322	.	+	.	Parent=Os04t0691500-02
Chr04	irgsp1_rep	three_prime_UTR	35380399	35380458	.	+	.	Parent=Os04t0691500-02
Chr04	irgsp1_rep	three_prime_UTR	35380559	35381225	.	+	.	Parent=Os04t0691500-02
Chr04	irgsp1_rep	mRNA	35381557	35382147	.	+	.	ID=Os04t0691600-01;Name=Os04t0691600-01;Locus_id=Os04g0691600;Note=Similar to 30S ribosomal protein S17.;Transcript_evidence=AK059422 (DDBJ%2C Best hit);ORF_evidence=Q9ZST1 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S17 (IPR000266),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=001-027-E01;Expression=AK059422;TENOR=Os04t0691600-01;KEGG=Os04t0691600-01
Chr04	irgsp1_rep	five_prime_UTR	35381557	35381617	.	+	.	Parent=Os04t0691600-01
Chr04	irgsp1_rep	CDS	35381618	35382055	.	+	0	Parent=Os04t0691600-01
Chr04	irgsp1_rep	three_prime_UTR	35382056	35382147	.	+	.	Parent=Os04t0691600-01
Chr04	irgsp1_rep	mRNA	35381589	35382214	.	+	.	ID=Os04t0691600-02;Name=Os04t0691600-02;Locus_id=Os04g0691600;Note=Similar to 30S ribosomal protein S17.;Transcript_evidence=AK099298 (DDBJ%2C Best hit);ORF_evidence=Q9ZST1 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S17 (IPR000266),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=J023135M11;Expression=AK099298;TENOR=Os04t0691600-02;KEGG=Os04t0691600-02
Chr04	irgsp1_rep	five_prime_UTR	35381589	35381617	.	+	.	Parent=Os04t0691600-02
Chr04	irgsp1_rep	CDS	35381618	35382055	.	+	0	Parent=Os04t0691600-02
Chr04	irgsp1_rep	three_prime_UTR	35382056	35382214	.	+	.	Parent=Os04t0691600-02
Chr04	irgsp1_rep	mRNA	35383000	35390423	.	-	.	ID=Os04t0691700-01;Name=Os04t0691700-01;Locus_id=Os04g0691700;Note=GCN5-related N-acetyltransferase (GNAT) domain domain containing protein.;Transcript_evidence=AK106305 (DDBJ%2C Best hit);ORF_evidence=Q7FAP7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: protein binding (GO:0005515),Molecular Function: N-acetyltransferase activity (GO:0008080),Molecular Function: zinc ion binding (GO:0008270);InterPro=GCN5-related N-acetyltransferase (GNAT) domain (IPR000182),Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Acyl-CoA N-acyltransferase (IPR016181),Zinc finger%2C PHD-finger (IPR019787);NIAS_FLcDNA=002-101-C09;TENOR=Os04t0691700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	35390422	35390423	.	-	.	Parent=Os04t0691700-01
Chr04	irgsp1_rep	CDS	35390290	35390421	.	-	0	Parent=Os04t0691700-01
Chr04	irgsp1_rep	CDS	35390023	35390146	.	-	0	Parent=Os04t0691700-01
Chr04	irgsp1_rep	CDS	35389553	35389638	.	-	2	Parent=Os04t0691700-01
Chr04	irgsp1_rep	CDS	35388916	35389157	.	-	0	Parent=Os04t0691700-01
Chr04	irgsp1_rep	CDS	35388163	35388249	.	-	1	Parent=Os04t0691700-01
Chr04	irgsp1_rep	CDS	35387257	35387356	.	-	1	Parent=Os04t0691700-01
Chr04	irgsp1_rep	CDS	35386839	35387034	.	-	0	Parent=Os04t0691700-01
Chr04	irgsp1_rep	CDS	35386522	35386718	.	-	2	Parent=Os04t0691700-01
Chr04	irgsp1_rep	CDS	35385871	35385891	.	-	0	Parent=Os04t0691700-01
Chr04	irgsp1_rep	three_prime_UTR	35385784	35385870	.	-	.	Parent=Os04t0691700-01
Chr04	irgsp1_rep	three_prime_UTR	35383959	35384736	.	-	.	Parent=Os04t0691700-01
Chr04	irgsp1_rep	three_prime_UTR	35383000	35383370	.	-	.	Parent=Os04t0691700-01
Chr04	irgsp1_rep	mRNA	35398665	35401898	.	-	.	ID=Os04t0691750-00;Name=Os04t0691750-00;Locus_id=Os04g0691750;Note=Similar to phosphoribosylanthranilate transferase.;Transcript_evidence=tplb0048i05 (Wheat FLcDNA);ORF_evidence=NP_001152458.1 (RefSeq);TENOR=Os04t0691750-00
Chr04	irgsp1_rep	five_prime_UTR	35401866	35401898	.	-	.	Parent=Os04t0691750-00
Chr04	irgsp1_rep	CDS	35398665	35401865	.	-	0	Parent=Os04t0691750-00
Chr04	irgsp1_rep	mRNA	35398774	35402551	.	+	.	ID=Os04t0691800-01;Name=Os04t0691800-01;Locus_id=Os04g0691800;Note=C2 domain containing protein.;Transcript_evidence=AK318532 (DDBJ%2C Best hit);ORF_evidence=NP_001152458.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),Phosphoribosyltransferase C-terminal (IPR013583),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=J065179N09;TENOR=Os04t0691800-01;KEGG=Os04t0691800-01
Chr04	irgsp1_rep	five_prime_UTR	35398774	35398850	.	+	.	Parent=Os04t0691800-01
Chr04	irgsp1_rep	CDS	35398851	35401916	.	+	0	Parent=Os04t0691800-01
Chr04	irgsp1_rep	three_prime_UTR	35401917	35402551	.	+	.	Parent=Os04t0691800-01
Chr04	irgsp1_rep	mRNA	35413301	35418842	.	+	.	ID=Os04t0691900-01;Name=Os04t0691900-01;Locus_id=Os04g0691900;Note=Chaperonin Cpn60/TCP-1 family protein.;Transcript_evidence=AK068257 (DDBJ%2C Best hit);ORF_evidence=Q7XKA1 (UniProt);GO=Biological Process: cellular protein metabolic process (GO:0044267),Biological Process: phosphatidylinositol metabolic process (GO:0046488),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphatidylinositol phosphate kinase activity (GO:0016307);InterPro=Chaperonin Cpn60/TCP-1 (IPR002423),Phosphatidylinositol-4-phosphate 5-kinase%2C core (IPR002498),Phosphatidylinositol-4-phosphate 5-kinase (IPR023610);NIAS_FLcDNA=J013148O14;Expression=AK068257;TENOR=Os04t0691900-01;KEGG=Os04t0691900-01
Chr04	irgsp1_rep	five_prime_UTR	35413301	35413419	.	+	.	Parent=Os04t0691900-01
Chr04	irgsp1_rep	CDS	35413522	35414517	.	+	0	Parent=Os04t0691900-01
Chr04	irgsp1_rep	CDS	35414602	35415438	.	+	0	Parent=Os04t0691900-01
Chr04	irgsp1_rep	CDS	35415543	35415877	.	+	0	Parent=Os04t0691900-01
Chr04	irgsp1_rep	CDS	35416247	35416373	.	+	1	Parent=Os04t0691900-01
Chr04	irgsp1_rep	CDS	35416470	35416628	.	+	0	Parent=Os04t0691900-01
Chr04	irgsp1_rep	CDS	35416748	35417929	.	+	0	Parent=Os04t0691900-01
Chr04	irgsp1_rep	CDS	35418040	35418300	.	+	0	Parent=Os04t0691900-01
Chr04	irgsp1_rep	CDS	35418389	35418637	.	+	0	Parent=Os04t0691900-01
Chr04	irgsp1_rep	three_prime_UTR	35418638	35418842	.	+	.	Parent=Os04t0691900-01
Chr04	irgsp1_rep	mRNA	35418974	35421543	.	-	.	ID=Os04t0692000-02;Name=Os04t0692000-02;Locus_id=Os04g0692000;Note=Protein of unknown function DUF6%2C transmembrane domain containing protein.;Transcript_evidence=AK103611 (DDBJ%2C Best hit),AK061991 (DDBJ%2C Best hit);ORF_evidence=B4G1R1 (UniProt);NIAS_FLcDNA=J033133J17,001-043-C01;Expression=AK103611;TENOR=Os04t0692000-02;KEGG=Os04t0692000-02;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	35421232	35421543	.	-	.	Parent=Os04t0692000-02
Chr04	irgsp1_rep	CDS	35421109	35421231	.	-	0	Parent=Os04t0692000-02
Chr04	irgsp1_rep	CDS	35420256	35420505	.	-	0	Parent=Os04t0692000-02
Chr04	irgsp1_rep	CDS	35419921	35420128	.	-	2	Parent=Os04t0692000-02
Chr04	irgsp1_rep	CDS	35419533	35419764	.	-	1	Parent=Os04t0692000-02
Chr04	irgsp1_rep	CDS	35419213	35419452	.	-	0	Parent=Os04t0692000-02
Chr04	irgsp1_rep	three_prime_UTR	35418974	35419212	.	-	.	Parent=Os04t0692000-02
Chr04	irgsp1_rep	mRNA	35423055	35426811	.	-	.	ID=Os04t0692100-01;Name=Os04t0692100-01;Locus_id=Os04g0692100;Note=Similar to Tubulin folding cofactor B.;Transcript_evidence=AK102150 (DDBJ%2C Best hit);ORF_evidence=A5CFZ4 (UniProt);InterPro=Cytoskeleton-associated protein%2C Gly-rich domain (IPR000938);NIAS_FLcDNA=J033086D17;Expression=AK102150;TENOR=Os04t0692100-01;KEGG=Os04t0692100-01
Chr04	irgsp1_rep	five_prime_UTR	35426749	35426811	.	-	.	Parent=Os04t0692100-01
Chr04	irgsp1_rep	CDS	35426638	35426748	.	-	0	Parent=Os04t0692100-01
Chr04	irgsp1_rep	CDS	35426423	35426574	.	-	0	Parent=Os04t0692100-01
Chr04	irgsp1_rep	CDS	35426230	35426348	.	-	1	Parent=Os04t0692100-01
Chr04	irgsp1_rep	CDS	35425663	35425727	.	-	2	Parent=Os04t0692100-01
Chr04	irgsp1_rep	CDS	35425548	35425589	.	-	0	Parent=Os04t0692100-01
Chr04	irgsp1_rep	CDS	35424503	35424636	.	-	0	Parent=Os04t0692100-01
Chr04	irgsp1_rep	CDS	35423796	35423865	.	-	1	Parent=Os04t0692100-01
Chr04	irgsp1_rep	CDS	35423377	35423424	.	-	0	Parent=Os04t0692100-01
Chr04	irgsp1_rep	three_prime_UTR	35423055	35423376	.	-	.	Parent=Os04t0692100-01
Chr04	irgsp1_rep	mRNA	35426979	35429380	.	+	.	ID=Os04t0692200-01;Name=Os04t0692200-01;Locus_id=Os04g0692200;RAP-DB Gene Symbol Synonym(s)=YSS1;RAP-DB Gene Name Synonym(s)=Young Seedling Stripe1;CGSNL Gene Symbol=YSS1;CGSNL Gene Name=YOUNG SEEDLING STRIPE1;Oryzabase Gene Name Synonym(s)=Young Seedling Stripe1%2C Young Seedling Stripe 1;Note=Chloroplast nucleoid-associated protein%2C Chloroplast development%2C Regulator of plastid-encoded plastid RNA polymerase (PEP) activity;Transcript_evidence=AK059807,AK060875,AK071726;ORF_evidence=Q0J8Q7;InterPro=Protein of unknown function DUF3727 (IPR022203);NIAS_FLcDNA=006-204-H08, 001-035-A02, J023110I24;Manual Curation=September 8%2C 2016;Literature_PMID=27578095;Oryzabase=21639;Expression=AK059807;TENOR=Os04t0692200-01;KEGG=Os04t0692200-01
Chr04	irgsp1_rep	five_prime_UTR	35426979	35427027	.	+	.	Parent=Os04t0692200-01
Chr04	irgsp1_rep	CDS	35427028	35427432	.	+	0	Parent=Os04t0692200-01
Chr04	irgsp1_rep	CDS	35427516	35427613	.	+	0	Parent=Os04t0692200-01
Chr04	irgsp1_rep	CDS	35427735	35427780	.	+	1	Parent=Os04t0692200-01
Chr04	irgsp1_rep	CDS	35427991	35428073	.	+	0	Parent=Os04t0692200-01
Chr04	irgsp1_rep	CDS	35428194	35428255	.	+	1	Parent=Os04t0692200-01
Chr04	irgsp1_rep	CDS	35428622	35428683	.	+	2	Parent=Os04t0692200-01
Chr04	irgsp1_rep	CDS	35428809	35428868	.	+	0	Parent=Os04t0692200-01
Chr04	irgsp1_rep	CDS	35428956	35428988	.	+	0	Parent=Os04t0692200-01
Chr04	irgsp1_rep	CDS	35429073	35429138	.	+	0	Parent=Os04t0692200-01
Chr04	irgsp1_rep	CDS	35429226	35429270	.	+	0	Parent=Os04t0692200-01
Chr04	irgsp1_rep	three_prime_UTR	35429271	35429380	.	+	.	Parent=Os04t0692200-01
Chr04	irgsp1_rep	mRNA	35429247	35429567	.	+	.	ID=Os04t0692200-02;Name=Os04t0692200-02;Locus_id=Os04g0692200;CGSNL Gene Symbol=YSS1;CGSNL Gene Name=YOUNG SEEDLING STRIPE1;Oryzabase Gene Name Synonym(s)=Young Seedling Stripe1%2C Young Seedling Stripe 1;Note=Non-protein coding transcript.;Transcript_evidence=AK059342 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-026-B06;Oryzabase=21639;TENOR=Os04t0692200-02
Chr04	irgsp1_rep	exon	35429247	35429567	.	+	.	Parent=Os04t0692200-02
Chr04	irgsp1_rep	mRNA	35430341	35432796	.	-	.	ID=Os04t0692300-01;Name=Os04t0692300-01;Locus_id=Os04g0692300;Note=Peptidase C14%2C ICE%2C catalytic subunit p20%2C active site domain containing protein.;Transcript_evidence=AK073368 (DDBJ%2C Best hit);ORF_evidence=XP_002871357.1 (RefSeq);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J033026O22;Expression=AK073368;TENOR=Os04t0692300-01;KEGG=Os04t0692300-01
Chr04	irgsp1_rep	five_prime_UTR	35432502	35432796	.	-	.	Parent=Os04t0692300-01
Chr04	irgsp1_rep	CDS	35431695	35432501	.	-	0	Parent=Os04t0692300-01
Chr04	irgsp1_rep	CDS	35430899	35430973	.	-	0	Parent=Os04t0692300-01
Chr04	irgsp1_rep	CDS	35430639	35430752	.	-	0	Parent=Os04t0692300-01
Chr04	irgsp1_rep	three_prime_UTR	35430341	35430638	.	-	.	Parent=Os04t0692300-01
Chr04	irgsp1_rep	mRNA	35435202	35439077	.	+	.	ID=Os04t0692400-01;Name=Os04t0692400-01;Locus_id=Os04g0692400;Note=Similar to ankyrin-like protein.;Transcript_evidence=AK070717 (DDBJ%2C Best hit);ORF_evidence=NP_001151565.1 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Protein of unknown function DUF248%2C methyltransferase putative (IPR004159);NIAS_FLcDNA=J023058L06;TENOR=Os04t0692400-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	35435202	35435411	.	+	.	Parent=Os04t0692400-01
Chr04	irgsp1_rep	CDS	35435412	35436047	.	+	0	Parent=Os04t0692400-01
Chr04	irgsp1_rep	CDS	35436131	35436280	.	+	0	Parent=Os04t0692400-01
Chr04	irgsp1_rep	CDS	35436622	35436892	.	+	0	Parent=Os04t0692400-01
Chr04	irgsp1_rep	CDS	35437029	35437139	.	+	2	Parent=Os04t0692400-01
Chr04	irgsp1_rep	CDS	35437353	35437527	.	+	2	Parent=Os04t0692400-01
Chr04	irgsp1_rep	CDS	35437625	35437897	.	+	1	Parent=Os04t0692400-01
Chr04	irgsp1_rep	CDS	35438128	35438322	.	+	1	Parent=Os04t0692400-01
Chr04	irgsp1_rep	CDS	35438623	35438845	.	+	1	Parent=Os04t0692400-01
Chr04	irgsp1_rep	three_prime_UTR	35438846	35439077	.	+	.	Parent=Os04t0692400-01
Chr04	irgsp1_rep	mRNA	35439339	35443769	.	+	.	ID=Os04t0692500-01;Name=Os04t0692500-01;Locus_id=Os04g0692500;Note=Similar to antiporter/ drug transporter/ transporter.;Transcript_evidence=AK121096 (DDBJ%2C Best hit);ORF_evidence=NP_001147555.1 (RefSeq);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528),Ribonuclease Zc3h12a-like (IPR021869);NIAS_FLcDNA=J023067I21;TENOR=Os04t0692500-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	35439339	35439354	.	+	.	Parent=Os04t0692500-01
Chr04	irgsp1_rep	CDS	35439355	35440443	.	+	0	Parent=Os04t0692500-01
Chr04	irgsp1_rep	CDS	35441035	35441124	.	+	0	Parent=Os04t0692500-01
Chr04	irgsp1_rep	CDS	35441226	35441407	.	+	0	Parent=Os04t0692500-01
Chr04	irgsp1_rep	CDS	35441783	35441903	.	+	1	Parent=Os04t0692500-01
Chr04	irgsp1_rep	CDS	35443070	35443138	.	+	0	Parent=Os04t0692500-01
Chr04	irgsp1_rep	CDS	35443226	35443357	.	+	0	Parent=Os04t0692500-01
Chr04	irgsp1_rep	three_prime_UTR	35443358	35443769	.	+	.	Parent=Os04t0692500-01
Chr04	irgsp1_rep	mRNA	35439339	35442005	.	+	.	ID=Os04t0692500-02;Name=Os04t0692500-02;Locus_id=Os04g0692500;Note=Similar to antiporter/ drug transporter/ transporter.;Transcript_evidence=AK101528 (DDBJ%2C Best hit);ORF_evidence=NP_001147555.1 (RefSeq);InterPro=Ribonuclease Zc3h12a-like (IPR021869);NIAS_FLcDNA=J033047H19;TENOR=Os04t0692500-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	35439339	35439354	.	+	.	Parent=Os04t0692500-02
Chr04	irgsp1_rep	CDS	35439355	35440443	.	+	0	Parent=Os04t0692500-02
Chr04	irgsp1_rep	CDS	35441035	35441124	.	+	0	Parent=Os04t0692500-02
Chr04	irgsp1_rep	CDS	35441226	35441407	.	+	0	Parent=Os04t0692500-02
Chr04	irgsp1_rep	CDS	35441783	35441927	.	+	1	Parent=Os04t0692500-02
Chr04	irgsp1_rep	three_prime_UTR	35441928	35442005	.	+	.	Parent=Os04t0692500-02
Chr04	irgsp1_rep	mRNA	35443929	35445557	.	+	.	ID=Os04t0692600-01;Name=Os04t0692600-01;Locus_id=Os04g0692600;RAP-DB Gene Symbol Synonym(s)=OsSGRL;RAP-DB Gene Name Synonym(s)=SGR-like%2C Stay-Green Rice like;CGSNL Gene Symbol=SGRL;CGSNL Gene Name=SGR-LIKE;Oryzabase Gene Symbol Synonym(s)=OsSGRL;Oryzabase Gene Name Synonym(s)=SGR-like;Note=Stay-Green like protein%2C Regulation of chlorophyll degradation;Transcript_evidence=AK105982;ORF_evidence=Q0J8Q3;InterPro=Staygreen protein (IPR024438);NIAS_FLcDNA=001-205-G02;Manual Curation=July 24%2C 2019;Literature_PMID=31289214,23816327;Oryzabase=23124;Expression=AK105982;TENOR=Os04t0692600-01;KEGG=Os04t0692600-01
Chr04	irgsp1_rep	five_prime_UTR	35443929	35444114	.	+	.	Parent=Os04t0692600-01
Chr04	irgsp1_rep	CDS	35444115	35444279	.	+	0	Parent=Os04t0692600-01
Chr04	irgsp1_rep	CDS	35444602	35444931	.	+	0	Parent=Os04t0692600-01
Chr04	irgsp1_rep	CDS	35445031	35445184	.	+	0	Parent=Os04t0692600-01
Chr04	irgsp1_rep	CDS	35445280	35445407	.	+	2	Parent=Os04t0692600-01
Chr04	irgsp1_rep	three_prime_UTR	35445408	35445557	.	+	.	Parent=Os04t0692600-01
Chr04	irgsp1_rep	mRNA	35443994	35445557	.	+	.	ID=Os04t0692600-02;Name=Os04t0692600-02;Locus_id=Os04g0692600;CGSNL Gene Symbol=SGRL;CGSNL Gene Name=SGR-LIKE;Oryzabase Gene Symbol Synonym(s)=OsSGRL;Oryzabase Gene Name Synonym(s)=SGR-like;Note=Staygreen protein domain containing protein.;Transcript_evidence=AK070001 (DDBJ%2C Best hit);ORF_evidence=B8AS49 (UniProt);InterPro=Staygreen protein (IPR024438);NIAS_FLcDNA=J023034E19;Oryzabase=23124;TENOR=Os04t0692600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	35443994	35444114	.	+	.	Parent=Os04t0692600-02
Chr04	irgsp1_rep	CDS	35444115	35444279	.	+	0	Parent=Os04t0692600-02
Chr04	irgsp1_rep	CDS	35444602	35444900	.	+	0	Parent=Os04t0692600-02
Chr04	irgsp1_rep	CDS	35445100	35445184	.	+	1	Parent=Os04t0692600-02
Chr04	irgsp1_rep	CDS	35445280	35445557	.	+	0	Parent=Os04t0692600-02
Chr04	irgsp1_rep	mRNA	35443994	35445567	.	+	.	ID=Os04t0692600-03;Name=Os04t0692600-03;Locus_id=Os04g0692600;CGSNL Gene Symbol=SGRL;CGSNL Gene Name=SGR-LIKE;Oryzabase Gene Symbol Synonym(s)=OsSGRL;Oryzabase Gene Name Synonym(s)=SGR-like;Note=Staygreen protein domain containing protein.;Transcript_evidence=AK105888 (DDBJ%2C Best hit);ORF_evidence=B8AS49 (UniProt);InterPro=Staygreen protein (IPR024438);NIAS_FLcDNA=001-204-E04;Oryzabase=23124;Expression=AK105888;TENOR=Os04t0692600-03;KEGG=Os04t0692600-03
Chr04	irgsp1_rep	five_prime_UTR	35443994	35444114	.	+	.	Parent=Os04t0692600-03
Chr04	irgsp1_rep	CDS	35444115	35444279	.	+	0	Parent=Os04t0692600-03
Chr04	irgsp1_rep	CDS	35444602	35444931	.	+	0	Parent=Os04t0692600-03
Chr04	irgsp1_rep	CDS	35445031	35445184	.	+	0	Parent=Os04t0692600-03
Chr04	irgsp1_rep	CDS	35445280	35445407	.	+	2	Parent=Os04t0692600-03
Chr04	irgsp1_rep	three_prime_UTR	35445408	35445567	.	+	.	Parent=Os04t0692600-03
Chr04	irgsp1_rep	mRNA	35445566	35451211	.	-	.	ID=Os04t0692700-01;Name=Os04t0692700-01;Locus_id=Os04g0692700;RAP-DB Gene Symbol Synonym(s)=ENL1L;RAP-DB Gene Name Synonym(s)=ENL1-LIKE;Oryzabase Gene Symbol Synonym(s)=ENL1L;Oryzabase Gene Name Synonym(s)=ENL1-LIKE;Note=SNF2 N-terminal domain and helicase C-terminal domain containing protein%2C ENL1-like;Transcript_evidence=AK318609 (Reverse complement);ORF_evidence=Inferred from literature;GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP binding (GO:0005524);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),Helicase superfamily 1/2%2C ATP-binding domain (IPR014001),SNF2-related (IPR000330),Helicase%2C C-terminal (IPR001650);Manual Curation=February 10%2C 2015;Literature_PMID=25327517;Oryzabase=20514;TENOR=Os04t0692700-00
Chr04	irgsp1_rep	five_prime_UTR	35451119	35451211	.	-	.	Parent=Os04t0692700-01
Chr04	irgsp1_rep	CDS	35450870	35451118	.	-	0	Parent=Os04t0692700-01
Chr04	irgsp1_rep	CDS	35450630	35450760	.	-	0	Parent=Os04t0692700-01
Chr04	irgsp1_rep	CDS	35450496	35450550	.	-	1	Parent=Os04t0692700-01
Chr04	irgsp1_rep	CDS	35450163	35450402	.	-	0	Parent=Os04t0692700-01
Chr04	irgsp1_rep	CDS	35450026	35450081	.	-	0	Parent=Os04t0692700-01
Chr04	irgsp1_rep	CDS	35449820	35449910	.	-	1	Parent=Os04t0692700-01
Chr04	irgsp1_rep	CDS	35449589	35449726	.	-	0	Parent=Os04t0692700-01
Chr04	irgsp1_rep	CDS	35449321	35449407	.	-	0	Parent=Os04t0692700-01
Chr04	irgsp1_rep	CDS	35448918	35449118	.	-	0	Parent=Os04t0692700-01
Chr04	irgsp1_rep	CDS	35448508	35448579	.	-	0	Parent=Os04t0692700-01
Chr04	irgsp1_rep	CDS	35448090	35448170	.	-	0	Parent=Os04t0692700-01
Chr04	irgsp1_rep	CDS	35447892	35448010	.	-	0	Parent=Os04t0692700-01
Chr04	irgsp1_rep	CDS	35447704	35447815	.	-	1	Parent=Os04t0692700-01
Chr04	irgsp1_rep	CDS	35447394	35447462	.	-	0	Parent=Os04t0692700-01
Chr04	irgsp1_rep	CDS	35447170	35447276	.	-	0	Parent=Os04t0692700-01
Chr04	irgsp1_rep	CDS	35446561	35446689	.	-	1	Parent=Os04t0692700-01
Chr04	irgsp1_rep	CDS	35445920	35446340	.	-	1	Parent=Os04t0692700-01
Chr04	irgsp1_rep	three_prime_UTR	35445566	35445919	.	-	.	Parent=Os04t0692700-01
Chr04	irgsp1_rep	mRNA	35452104	35459864	.	-	.	ID=Os04t0692750-01;Name=Os04t0692750-01;Locus_id=Os04g0692750;RAP-DB Gene Symbol Synonym(s)=ENL1%2C enl1;RAP-DB Gene Name Synonym(s)=ENDOSPERMLESS 1%2C endospermless1%2C endospermless 1%2C endospermless-1;CGSNL Gene Symbol=ENL1;CGSNL Gene Name=ENDOSPERMLESS 1;Oryzabase Gene Symbol Synonym(s)=enl1;Oryzabase Gene Name Synonym(s)=endospermless1%2C endospermless 1%2C endospermless-1%2C SNF2 family helicase ENL1;Note=SNF2 family Chromatin-remodeling helicase%2C Syncytial endosperm development;Transcript_evidence=AK242828 (Reverse complement);ORF_evidence=Inferred from literature;GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP binding (GO:0005524);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),Helicase superfamily 1/2%2C ATP-binding domain (IPR014001),SNF2-related (IPR000330),Helicase%2C C-terminal (IPR001650);Manual Curation=February 9%2C 2015;Literature_PMID=25327517;Oryzabase=99;TENOR=Os04t0692750-00
Chr04	irgsp1_rep	five_prime_UTR	35459700	35459864	.	-	.	Parent=Os04t0692750-01
Chr04	irgsp1_rep	CDS	35459492	35459699	.	-	0	Parent=Os04t0692750-01
Chr04	irgsp1_rep	CDS	35458692	35459425	.	-	2	Parent=Os04t0692750-01
Chr04	irgsp1_rep	CDS	35458101	35458231	.	-	0	Parent=Os04t0692750-01
Chr04	irgsp1_rep	CDS	35457955	35458009	.	-	1	Parent=Os04t0692750-01
Chr04	irgsp1_rep	CDS	35457518	35457751	.	-	0	Parent=Os04t0692750-01
Chr04	irgsp1_rep	CDS	35457385	35457440	.	-	0	Parent=Os04t0692750-01
Chr04	irgsp1_rep	CDS	35457203	35457293	.	-	1	Parent=Os04t0692750-01
Chr04	irgsp1_rep	CDS	35456573	35456710	.	-	0	Parent=Os04t0692750-01
Chr04	irgsp1_rep	CDS	35456403	35456480	.	-	0	Parent=Os04t0692750-01
Chr04	irgsp1_rep	CDS	35455931	35456146	.	-	0	Parent=Os04t0692750-01
Chr04	irgsp1_rep	CDS	35455777	35455848	.	-	0	Parent=Os04t0692750-01
Chr04	irgsp1_rep	CDS	35454632	35454712	.	-	0	Parent=Os04t0692750-01
Chr04	irgsp1_rep	CDS	35454424	35454542	.	-	0	Parent=Os04t0692750-01
Chr04	irgsp1_rep	CDS	35454211	35454322	.	-	1	Parent=Os04t0692750-01
Chr04	irgsp1_rep	CDS	35453687	35453755	.	-	0	Parent=Os04t0692750-01
Chr04	irgsp1_rep	CDS	35453507	35453601	.	-	0	Parent=Os04t0692750-01
Chr04	irgsp1_rep	CDS	35452940	35453068	.	-	1	Parent=Os04t0692750-01
Chr04	irgsp1_rep	CDS	35452730	35452795	.	-	1	Parent=Os04t0692750-01
Chr04	irgsp1_rep	CDS	35452522	35452648	.	-	1	Parent=Os04t0692750-01
Chr04	irgsp1_rep	CDS	35452283	35452435	.	-	0	Parent=Os04t0692750-01
Chr04	irgsp1_rep	three_prime_UTR	35452104	35452282	.	-	.	Parent=Os04t0692750-01
Chr04	irgsp1_rep	mRNA	35462597	35463100	.	+	.	ID=Os04t0692800-00;Name=Os04t0692800-00;Locus_id=Os04g0692800;Note=Amine oxidase domain containing protein.;Transcript_evidence=FP097287 (DDBJ);ORF_evidence=NP_001054372.2 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Amine oxidase (IPR002937);TENOR=Os04t0692800-00;KEGG=Os04t0692800-00 (EC:1.8.3.5)
Chr04	irgsp1_rep	CDS	35462597	35463100	.	+	0	Parent=Os04t0692800-00
Chr04	irgsp1_rep	mRNA	35467372	35471374	.	+	.	ID=Os04t0692850-00;Name=Os04t0692850-00;Locus_id=Os04g0692850;Note=Hypothetical protein.;Transcript_evidence=tplb0024f23 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os04t0692850-00
Chr04	irgsp1_rep	five_prime_UTR	35467372	35467459	.	+	.	Parent=Os04t0692850-00
Chr04	irgsp1_rep	five_prime_UTR	35468065	35468125	.	+	.	Parent=Os04t0692850-00
Chr04	irgsp1_rep	five_prime_UTR	35468334	35468668	.	+	.	Parent=Os04t0692850-00
Chr04	irgsp1_rep	five_prime_UTR	35468781	35469346	.	+	.	Parent=Os04t0692850-00
Chr04	irgsp1_rep	five_prime_UTR	35469435	35469742	.	+	.	Parent=Os04t0692850-00
Chr04	irgsp1_rep	five_prime_UTR	35470462	35471007	.	+	.	Parent=Os04t0692850-00
Chr04	irgsp1_rep	CDS	35471008	35471059	.	+	0	Parent=Os04t0692850-00
Chr04	irgsp1_rep	CDS	35471122	35471374	.	+	2	Parent=Os04t0692850-00
Chr04	irgsp1_rep	mRNA	35469155	35471465	.	-	.	ID=Os04t0692900-01;Name=Os04t0692900-01;Locus_id=Os04g0692900;Note=WIYLD domain domain containing protein.;Transcript_evidence=AK067984 (DDBJ%2C Best hit);ORF_evidence=B8AS58 (UniProt);GO=Molecular Function: histone-lysine N-methyltransferase activity (GO:0018024);InterPro=WIYLD domain (IPR018848);NIAS_FLcDNA=J013122N19;TENOR=Os04t0692900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	35471331	35471465	.	-	.	Parent=Os04t0692900-01
Chr04	irgsp1_rep	CDS	35471145	35471330	.	-	0	Parent=Os04t0692900-01
Chr04	irgsp1_rep	CDS	35470539	35471064	.	-	0	Parent=Os04t0692900-01
Chr04	irgsp1_rep	CDS	35469155	35469766	.	-	2	Parent=Os04t0692900-01
Chr04	irgsp1_rep	mRNA	35473550	35477963	.	-	.	ID=Os04t0693000-01;Name=Os04t0693000-01;Locus_id=Os04g0693000;Note=Similar to Ribophorin I (Fragment).;Transcript_evidence=AK065083 (DDBJ%2C Best hit);ORF_evidence=B6TCC9 (UniProt);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: endoplasmic reticulum (GO:0005783),Cellular Component: integral to membrane (GO:0016021),Molecular Function: dolichyl-diphosphooligosaccharide-protein glycotransferase activity (GO:0004579);InterPro=Ribophorin I (IPR007676);NIAS_FLcDNA=J013001L10;TENOR=Os04t0693000-01;KEGG=Os04t0693000-01
Chr04	irgsp1_rep	five_prime_UTR	35477897	35477963	.	-	.	Parent=Os04t0693000-01
Chr04	irgsp1_rep	CDS	35477765	35477896	.	-	0	Parent=Os04t0693000-01
Chr04	irgsp1_rep	CDS	35477301	35477345	.	-	0	Parent=Os04t0693000-01
Chr04	irgsp1_rep	CDS	35476589	35477223	.	-	0	Parent=Os04t0693000-01
Chr04	irgsp1_rep	CDS	35475950	35476097	.	-	1	Parent=Os04t0693000-01
Chr04	irgsp1_rep	CDS	35475642	35475821	.	-	0	Parent=Os04t0693000-01
Chr04	irgsp1_rep	CDS	35475206	35475274	.	-	0	Parent=Os04t0693000-01
Chr04	irgsp1_rep	CDS	35474110	35474199	.	-	0	Parent=Os04t0693000-01
Chr04	irgsp1_rep	CDS	35473872	35473997	.	-	0	Parent=Os04t0693000-01
Chr04	irgsp1_rep	three_prime_UTR	35473550	35473871	.	-	.	Parent=Os04t0693000-01
Chr04	irgsp1_rep	mRNA	35473679	35477225	.	-	.	ID=Os04t0693000-02;Name=Os04t0693000-02;Locus_id=Os04g0693000;Note=Similar to dolichyl-diphosphooligosaccharide--protein glycosyltransferase 67 kDasubunit.;Transcript_evidence=AK059710 (DDBJ%2C Best hit);ORF_evidence=B6TCC9 (UniProt);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: endoplasmic reticulum (GO:0005783),Cellular Component: integral to membrane (GO:0016021),Molecular Function: dolichyl-diphosphooligosaccharide-protein glycotransferase activity (GO:0004579);InterPro=Ribophorin I (IPR007676);NIAS_FLcDNA=001-032-F01;TENOR=Os04t0693000-02;KEGG=Os04t0693000-02
Chr04	irgsp1_rep	five_prime_UTR	35477224	35477225	.	-	.	Parent=Os04t0693000-02
Chr04	irgsp1_rep	CDS	35476589	35477223	.	-	0	Parent=Os04t0693000-02
Chr04	irgsp1_rep	CDS	35475950	35476097	.	-	1	Parent=Os04t0693000-02
Chr04	irgsp1_rep	CDS	35475642	35475821	.	-	0	Parent=Os04t0693000-02
Chr04	irgsp1_rep	CDS	35475206	35475274	.	-	0	Parent=Os04t0693000-02
Chr04	irgsp1_rep	CDS	35474110	35474199	.	-	0	Parent=Os04t0693000-02
Chr04	irgsp1_rep	CDS	35473872	35473997	.	-	0	Parent=Os04t0693000-02
Chr04	irgsp1_rep	three_prime_UTR	35473679	35473871	.	-	.	Parent=Os04t0693000-02
Chr04	irgsp1_rep	mRNA	35481025	35481804	.	-	.	ID=Os04t0693050-01;Name=Os04t0693050-01;Locus_id=Os04g0693050;Note=Similar to CytoChrome c.;Transcript_evidence=AK121277 (DDBJ%2C Best hit);ORF_evidence=B6T2W2 (UniProt);GO=Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome c%2C class IA/ IB (IPR002327),CytoChrome c%2C class I (IPR003088),CytoChrome c domain (IPR009056);NIAS_FLcDNA=J023108A04;TENOR=Os04t0693050-01;KEGG=Os04t0693050-01
Chr04	irgsp1_rep	five_prime_UTR	35481687	35481804	.	-	.	Parent=Os04t0693050-01
Chr04	irgsp1_rep	CDS	35481399	35481686	.	-	0	Parent=Os04t0693050-01
Chr04	irgsp1_rep	three_prime_UTR	35481025	35481398	.	-	.	Parent=Os04t0693050-01
Chr04	irgsp1_rep	mRNA	35488972	35490861	.	-	.	ID=Os04t0693100-00;Name=Os04t0693100-00;Locus_id=Os04g0693100;Note=Hypothetical conserved gene.;Transcript_evidence=BT061526 (DDBJ);ORF_evidence=B8AS59 (UniProt);TENOR=Os04t0693100-00;KEGG=Os04t0693100-00
Chr04	irgsp1_rep	CDS	35490406	35490861	.	-	0	Parent=Os04t0693100-00
Chr04	irgsp1_rep	CDS	35488972	35489142	.	-	0	Parent=Os04t0693100-00
Chr04	irgsp1_rep	mRNA	35492782	35493775	.	-	.	ID=Os04t0693200-00;Name=Os04t0693200-00;Locus_id=Os04g0693200;Note=Conserved hypothetical protein.;Transcript_evidence=FP099358 (DDBJ);ORF_evidence=B9FDT2 (UniProt);TENOR=Os04t0693200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr04	irgsp1_rep	five_prime_UTR	35493754	35493775	.	-	.	Parent=Os04t0693200-00
Chr04	irgsp1_rep	CDS	35493556	35493753	.	-	0	Parent=Os04t0693200-00
Chr04	irgsp1_rep	CDS	35493386	35493489	.	-	0	Parent=Os04t0693200-00
Chr04	irgsp1_rep	CDS	35493297	35493303	.	-	1	Parent=Os04t0693200-00
Chr04	irgsp1_rep	three_prime_UTR	35493142	35493296	.	-	.	Parent=Os04t0693200-00
Chr04	irgsp1_rep	three_prime_UTR	35492782	35493046	.	-	.	Parent=Os04t0693200-00
Chr04	irgsp1_rep	mRNA	35493998	35497285	.	+	.	ID=Os04t0693250-01;Name=Os04t0693250-01;Locus_id=Os04g0693250;Note=Conserved hypothetical protein.;Transcript_evidence=AK106512 (DDBJ%2C Best hit);ORF_evidence=B9FDT3 (UniProt);NIAS_FLcDNA=002-107-A06;TENOR=Os04t0693250-01;KEGG=Os04t0693250-01
Chr04	irgsp1_rep	five_prime_UTR	35493998	35494510	.	+	.	Parent=Os04t0693250-01
Chr04	irgsp1_rep	five_prime_UTR	35495276	35495298	.	+	.	Parent=Os04t0693250-01
Chr04	irgsp1_rep	CDS	35495299	35495496	.	+	0	Parent=Os04t0693250-01
Chr04	irgsp1_rep	CDS	35495563	35495662	.	+	0	Parent=Os04t0693250-01
Chr04	irgsp1_rep	CDS	35495749	35495910	.	+	2	Parent=Os04t0693250-01
Chr04	irgsp1_rep	CDS	35496003	35496049	.	+	2	Parent=Os04t0693250-01
Chr04	irgsp1_rep	CDS	35496697	35496856	.	+	0	Parent=Os04t0693250-01
Chr04	irgsp1_rep	CDS	35496933	35496996	.	+	2	Parent=Os04t0693250-01
Chr04	irgsp1_rep	CDS	35497092	35497146	.	+	1	Parent=Os04t0693250-01
Chr04	irgsp1_rep	three_prime_UTR	35497147	35497285	.	+	.	Parent=Os04t0693250-01
Chr04	irgsp1_rep	mRNA	35494072	35497273	.	+	.	ID=Os04t0693250-02;Name=Os04t0693250-02;Locus_id=Os04g0693250;Note=Conserved hypothetical protein.;Transcript_evidence=AK103386 (DDBJ%2C Best hit);ORF_evidence=B9FDT3 (UniProt);NIAS_FLcDNA=J033127H23;TENOR=Os04t0693250-02;KEGG=Os04t0693250-02
Chr04	irgsp1_rep	five_prime_UTR	35494072	35495298	.	+	.	Parent=Os04t0693250-02
Chr04	irgsp1_rep	CDS	35495299	35495496	.	+	0	Parent=Os04t0693250-02
Chr04	irgsp1_rep	CDS	35495563	35495662	.	+	0	Parent=Os04t0693250-02
Chr04	irgsp1_rep	CDS	35495749	35495910	.	+	2	Parent=Os04t0693250-02
Chr04	irgsp1_rep	CDS	35496003	35496049	.	+	2	Parent=Os04t0693250-02
Chr04	irgsp1_rep	CDS	35496697	35496856	.	+	0	Parent=Os04t0693250-02
Chr04	irgsp1_rep	CDS	35496933	35496996	.	+	2	Parent=Os04t0693250-02
Chr04	irgsp1_rep	CDS	35497092	35497146	.	+	1	Parent=Os04t0693250-02
Chr04	irgsp1_rep	three_prime_UTR	35497147	35497273	.	+	.	Parent=Os04t0693250-02
Chr04	irgsp1_rep	mRNA	35499332	35499760	.	-	.	ID=Os04t0693300-00;Name=Os04t0693300-00;Locus_id=Os04g0693300;Note=Hypothetical conserved gene.;Transcript_evidence=CT827881 (DDBJ%2C Best hit);ORF_evidence=B8AS55 (UniProt);TENOR=Os04t0693300-00
Chr04	irgsp1_rep	five_prime_UTR	35499760	35499760	.	-	.	Parent=Os04t0693300-00
Chr04	irgsp1_rep	CDS	35499410	35499759	.	-	0	Parent=Os04t0693300-00
Chr04	irgsp1_rep	CDS	35499332	35499397	.	-	1	Parent=Os04t0693300-00
Chr04	irgsp1_rep	mRNA	35499478	35501334	.	+	.	ID=Os04t0693400-00;Name=Os04t0693400-00;Locus_id=Os04g0693400;Note=Hypothetical protein.;Transcript_evidence=AK361241 (DDBJ);ORF_evidence=longestORF;TENOR=Os04t0693400-00
Chr04	irgsp1_rep	five_prime_UTR	35499478	35500183	.	+	.	Parent=Os04t0693400-00
Chr04	irgsp1_rep	CDS	35500184	35500948	.	+	0	Parent=Os04t0693400-00
Chr04	irgsp1_rep	three_prime_UTR	35500949	35501334	.	+	.	Parent=Os04t0693400-00
Chr05	irgsp1_rep	mRNA	10947	11430	.	-	.	ID=Os05t0100008-00;Name=Os05t0100008-00;Locus_id=Os05g0100008;Note=Hypothetical conserved gene.;Transcript_evidence=BT017480 (DDBJ);ORF_evidence=A3CBL1 (UniProt);TENOR=Os05t0100008-00;KEGG=Os05t0100008-00
Chr05	irgsp1_rep	five_prime_UTR	11430	11430	.	-	.	Parent=Os05t0100008-00
Chr05	irgsp1_rep	CDS	10947	11429	.	-	0	Parent=Os05t0100008-00
Chr05	irgsp1_rep	mRNA	12831	14076	.	+	.	ID=Os05t0100016-00;Name=Os05t0100016-00;Locus_id=Os05g0100016;Note=Hypothetical conserved gene.;Transcript_evidence=EU973439 (DDBJ);ORF_evidence=A3CBL2 (UniProt);TENOR=Os05t0100016-00;KEGG=Os05t0100016-00
Chr05	irgsp1_rep	CDS	12831	13261	.	+	0	Parent=Os05t0100016-00
Chr05	irgsp1_rep	CDS	13858	14071	.	+	1	Parent=Os05t0100016-00
Chr05	irgsp1_rep	three_prime_UTR	14072	14076	.	+	.	Parent=Os05t0100016-00
Chr05	irgsp1_rep	mRNA	33369	36483	.	+	.	ID=Os05t0100100-01;Name=Os05t0100100-01;Locus_id=Os05g0100100;Note=Similar to cDNA clone:006-204-G09%2C full insert sequence.;Transcript_evidence=AK241430 (DDBJ%2C Best hit);ORF_evidence=B7E5N6 (UniProt);NIAS_FLcDNA=J065161O13;TENOR=Os05t0100100-01;KEGG=Os05t0100100-01
Chr05	irgsp1_rep	five_prime_UTR	33369	33492	.	+	.	Parent=Os05t0100100-01
Chr05	irgsp1_rep	five_prime_UTR	33595	33692	.	+	.	Parent=Os05t0100100-01
Chr05	irgsp1_rep	five_prime_UTR	33837	33950	.	+	.	Parent=Os05t0100100-01
Chr05	irgsp1_rep	five_prime_UTR	34676	34702	.	+	.	Parent=Os05t0100100-01
Chr05	irgsp1_rep	CDS	34703	35119	.	+	0	Parent=Os05t0100100-01
Chr05	irgsp1_rep	CDS	35223	35510	.	+	0	Parent=Os05t0100100-01
Chr05	irgsp1_rep	three_prime_UTR	36270	36483	.	+	.	Parent=Os05t0100100-01
Chr05	irgsp1_rep	mRNA	37224	37440	.	-	.	ID=Os05t0100300-01;Name=Os05t0100300-01;Locus_id=Os05g0100300;Note=Non-protein coding transcript.;Transcript_evidence=AK058800 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-003-A02;TENOR=Os05t0100300-01
Chr05	irgsp1_rep	exon	37224	37440	.	-	.	Parent=Os05t0100300-01
Chr05	irgsp1_rep	mRNA	38788	39027	.	-	.	ID=Os05t0100366-00;Name=Os05t0100366-00;Locus_id=Os05g0100366;Note=Non-protein coding transcript.;Transcript_evidence=CT836431 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os05t0100366-00
Chr05	irgsp1_rep	exon	38788	39027	.	-	.	Parent=Os05t0100366-00
Chr05	irgsp1_rep	mRNA	44725	47165	.	-	.	ID=Os05t0100500-01;Name=Os05t0100500-01;Locus_id=Os05g0100500;Note=Similar to Debaryomyces hansenii Chromosome F of strain CBS767 of Debaryomyces hansenii.;Transcript_evidence=AK071466 (DDBJ%2C Best hit);ORF_evidence=Q1EPA1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634);InterPro=Paired amphipathic helix (IPR003822);NIAS_FLcDNA=J023096A15;Expression=AK071466;TENOR=Os05t0100500-01;KEGG=Os05t0100500-01
Chr05	irgsp1_rep	five_prime_UTR	46827	47165	.	-	.	Parent=Os05t0100500-01
Chr05	irgsp1_rep	CDS	46762	46826	.	-	0	Parent=Os05t0100500-01
Chr05	irgsp1_rep	CDS	46448	46630	.	-	1	Parent=Os05t0100500-01
Chr05	irgsp1_rep	CDS	46188	46359	.	-	1	Parent=Os05t0100500-01
Chr05	irgsp1_rep	CDS	45992	46090	.	-	0	Parent=Os05t0100500-01
Chr05	irgsp1_rep	CDS	45745	45912	.	-	0	Parent=Os05t0100500-01
Chr05	irgsp1_rep	CDS	45048	45339	.	-	0	Parent=Os05t0100500-01
Chr05	irgsp1_rep	CDS	44725	44849	.	-	2	Parent=Os05t0100500-01
Chr05	irgsp1_rep	mRNA	60260	62602	.	+	.	ID=Os05t0100600-01;Name=Os05t0100600-01;Locus_id=Os05g0100600;Note=Similar to aminophospholipid ATPase.;Transcript_evidence=AK100999 (DDBJ%2C Best hit);ORF_evidence=XP_002318557.1 (RefSeq);GO=Biological Process: cation transport (GO:0006812),Biological Process: phospholipid transport (GO:0015914),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: phospholipid-translocating ATPase activity (GO:0004012),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662),Molecular Function: metal ion binding (GO:0046872);InterPro=ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),ATPase%2C P-type%2C phospholipid-translocating%2C flippase (IPR006539),ATPase%2C P-type%2C ATPase-associated domain (IPR008250),ATPase%2C P-type phosphorylation site (IPR018303),HAD-like domain (IPR023214),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C  P-type%2C cytoplasmic transduction domain A (IPR023300);NIAS_FLcDNA=J023147B04;TENOR=Os05t0100600-01
Chr05	irgsp1_rep	five_prime_UTR	60260	60766	.	+	.	Parent=Os05t0100600-01
Chr05	irgsp1_rep	CDS	60767	61192	.	+	0	Parent=Os05t0100600-01
Chr05	irgsp1_rep	CDS	61537	62602	.	+	0	Parent=Os05t0100600-01
Chr05	irgsp1_rep	mRNA	61861	65327	.	+	.	ID=Os05t0100600-02;Name=Os05t0100600-02;Locus_id=Os05g0100600;Note=Similar to Potential phospholipid-transporting ATPase 7 (EC 3.6.3.1) (Aminophospholipid flippase 7).;Transcript_evidence=AK064514 (DDBJ%2C Best hit);ORF_evidence=XP_002318557.1 (RefSeq);GO=Biological Process: phospholipid transport (GO:0015914),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: phospholipid-translocating ATPase activity (GO:0004012),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C catalyzing transmembrane movement of substances (GO:0016820),Molecular Function: metal ion binding (GO:0046872);InterPro=ATPase%2C P-type%2C phospholipid-translocating%2C flippase (IPR006539),ATPase%2C P-type%2C ATPase-associated domain (IPR008250),ATPase%2C P-type phosphorylation site (IPR018303),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C  P-type%2C cytoplasmic transduction domain A (IPR023300),ATPase%2C cation-transporting%2C domain N (IPR023306);NIAS_FLcDNA=002-111-F02;Expression=AK064514;TENOR=Os05t0100600-02;KEGG=Os05t0100600-02 (EC:3.6.3.1)
Chr05	irgsp1_rep	CDS	61861	62864	.	+	0	Parent=Os05t0100600-02
Chr05	irgsp1_rep	CDS	62957	63067	.	+	1	Parent=Os05t0100600-02
Chr05	irgsp1_rep	CDS	63181	63435	.	+	1	Parent=Os05t0100600-02
Chr05	irgsp1_rep	CDS	64924	65059	.	+	1	Parent=Os05t0100600-02
Chr05	irgsp1_rep	three_prime_UTR	65060	65327	.	+	.	Parent=Os05t0100600-02
Chr05	irgsp1_rep	mRNA	66009	69823	.	-	.	ID=Os05t0100700-01;Name=Os05t0100700-01;Locus_id=Os05g0100700;CGSNL Gene Symbol=RLCK175;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 175;Oryzabase Gene Symbol Synonym(s)=OsRLCK175;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 175;Note=Hypothetical conserved gene.;Transcript_evidence=AK061517 (DDBJ%2C Best hit);ORF_evidence=Q1EP18 (UniProt);NIAS_FLcDNA=006-309-H08;Oryzabase=18878;Expression=AK061517;TENOR=Os05t0100700-01;KEGG=Os05t0100700-01
Chr05	irgsp1_rep	five_prime_UTR	69333	69823	.	-	.	Parent=Os05t0100700-01
Chr05	irgsp1_rep	CDS	69314	69332	.	-	0	Parent=Os05t0100700-01
Chr05	irgsp1_rep	CDS	66312	66427	.	-	2	Parent=Os05t0100700-01
Chr05	irgsp1_rep	three_prime_UTR	66009	66311	.	-	.	Parent=Os05t0100700-01
Chr05	irgsp1_rep	mRNA	65356	68260	.	-	.	ID=Os05t0100700-02;Name=Os05t0100700-02;Locus_id=Os05g0100700;CGSNL Gene Symbol=RLCK175;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 175;Oryzabase Gene Symbol Synonym(s)=OsRLCK175;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 175;Note=Similar to Somatic embryogenesis receptor kinase-like protein.;Transcript_evidence=AK110818 (DDBJ%2C Best hit);ORF_evidence=Q1EP18 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-171-G06;Oryzabase=18878;Expression=AK110818;TENOR=Os05t0100700-02;KEGG=Os05t0100700-02
Chr05	irgsp1_rep	five_prime_UTR	68259	68260	.	-	.	Parent=Os05t0100700-02
Chr05	irgsp1_rep	CDS	68195	68258	.	-	0	Parent=Os05t0100700-02
Chr05	irgsp1_rep	CDS	68015	68101	.	-	2	Parent=Os05t0100700-02
Chr05	irgsp1_rep	CDS	67852	67922	.	-	2	Parent=Os05t0100700-02
Chr05	irgsp1_rep	CDS	67654	67730	.	-	0	Parent=Os05t0100700-02
Chr05	irgsp1_rep	CDS	67423	67570	.	-	1	Parent=Os05t0100700-02
Chr05	irgsp1_rep	CDS	66685	66846	.	-	0	Parent=Os05t0100700-02
Chr05	irgsp1_rep	CDS	66312	66494	.	-	0	Parent=Os05t0100700-02
Chr05	irgsp1_rep	three_prime_UTR	65356	66311	.	-	.	Parent=Os05t0100700-02
Chr05	irgsp1_rep	mRNA	66208	69589	.	+	.	ID=Os05t0100750-00;Name=Os05t0100750-00;Locus_id=Os05g0100750;Note=Hypothetical protein.;Transcript_evidence=tplb0028p02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0100750-00
Chr05	irgsp1_rep	five_prime_UTR	66208	66491	.	+	.	Parent=Os05t0100750-00
Chr05	irgsp1_rep	five_prime_UTR	66682	66839	.	+	.	Parent=Os05t0100750-00
Chr05	irgsp1_rep	five_prime_UTR	67412	67566	.	+	.	Parent=Os05t0100750-00
Chr05	irgsp1_rep	five_prime_UTR	67642	67731	.	+	.	Parent=Os05t0100750-00
Chr05	irgsp1_rep	five_prime_UTR	67853	67921	.	+	.	Parent=Os05t0100750-00
Chr05	irgsp1_rep	five_prime_UTR	68014	68103	.	+	.	Parent=Os05t0100750-00
Chr05	irgsp1_rep	five_prime_UTR	68202	68576	.	+	.	Parent=Os05t0100750-00
Chr05	irgsp1_rep	five_prime_UTR	68810	69342	.	+	.	Parent=Os05t0100750-00
Chr05	irgsp1_rep	CDS	69343	69589	.	+	0	Parent=Os05t0100750-00
Chr05	irgsp1_rep	mRNA	71163	73225	.	-	.	ID=Os05t0100800-01;Name=Os05t0100800-01;Locus_id=Os05g0100800;Note=Nucleic acid-binding%2C OB-fold domain containing protein.;Transcript_evidence=AK121085 (DDBJ%2C Best hit);ORF_evidence=NP_849633.1 (RefSeq);InterPro=Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=J023064B05;Expression=AK121085;TENOR=Os05t0100800-01;KEGG=Os05t0100800-01
Chr05	irgsp1_rep	five_prime_UTR	73113	73225	.	-	.	Parent=Os05t0100800-01
Chr05	irgsp1_rep	five_prime_UTR	72928	72935	.	-	.	Parent=Os05t0100800-01
Chr05	irgsp1_rep	CDS	72714	72927	.	-	0	Parent=Os05t0100800-01
Chr05	irgsp1_rep	CDS	71390	71580	.	-	2	Parent=Os05t0100800-01
Chr05	irgsp1_rep	three_prime_UTR	71163	71389	.	-	.	Parent=Os05t0100800-01
Chr05	irgsp1_rep	mRNA	75278	83483	.	-	.	ID=Os05t0100900-01;Name=Os05t0100900-01;Locus_id=Os05g0100900;Note=Hypothetical conserved gene.;Transcript_evidence=AK241965 (DDBJ%2C Best hit);ORF_evidence=B8AWI8 (UniProt);NIAS_FLcDNA=J075094N10;TENOR=Os05t0100900-01;KEGG=Os05t0100900-01
Chr05	irgsp1_rep	five_prime_UTR	83282	83483	.	-	.	Parent=Os05t0100900-01
Chr05	irgsp1_rep	CDS	83153	83281	.	-	0	Parent=Os05t0100900-01
Chr05	irgsp1_rep	CDS	83004	83066	.	-	0	Parent=Os05t0100900-01
Chr05	irgsp1_rep	CDS	82527	82828	.	-	0	Parent=Os05t0100900-01
Chr05	irgsp1_rep	CDS	82355	82448	.	-	1	Parent=Os05t0100900-01
Chr05	irgsp1_rep	CDS	82195	82272	.	-	0	Parent=Os05t0100900-01
Chr05	irgsp1_rep	CDS	82055	82114	.	-	0	Parent=Os05t0100900-01
Chr05	irgsp1_rep	CDS	81875	81979	.	-	0	Parent=Os05t0100900-01
Chr05	irgsp1_rep	CDS	81336	81446	.	-	0	Parent=Os05t0100900-01
Chr05	irgsp1_rep	CDS	80861	80902	.	-	0	Parent=Os05t0100900-01
Chr05	irgsp1_rep	CDS	80565	80681	.	-	0	Parent=Os05t0100900-01
Chr05	irgsp1_rep	CDS	80306	80493	.	-	0	Parent=Os05t0100900-01
Chr05	irgsp1_rep	CDS	79488	79771	.	-	1	Parent=Os05t0100900-01
Chr05	irgsp1_rep	CDS	79273	79394	.	-	2	Parent=Os05t0100900-01
Chr05	irgsp1_rep	CDS	79114	79156	.	-	0	Parent=Os05t0100900-01
Chr05	irgsp1_rep	CDS	78912	79003	.	-	2	Parent=Os05t0100900-01
Chr05	irgsp1_rep	CDS	78383	78431	.	-	0	Parent=Os05t0100900-01
Chr05	irgsp1_rep	CDS	78047	78117	.	-	2	Parent=Os05t0100900-01
Chr05	irgsp1_rep	CDS	77835	77954	.	-	0	Parent=Os05t0100900-01
Chr05	irgsp1_rep	CDS	77075	77163	.	-	0	Parent=Os05t0100900-01
Chr05	irgsp1_rep	CDS	76150	76195	.	-	1	Parent=Os05t0100900-01
Chr05	irgsp1_rep	CDS	75504	75551	.	-	0	Parent=Os05t0100900-01
Chr05	irgsp1_rep	three_prime_UTR	75278	75503	.	-	.	Parent=Os05t0100900-01
Chr05	irgsp1_rep	mRNA	91716	95725	.	+	.	ID=Os05t0101200-01;Name=Os05t0101200-01;Locus_id=Os05g0101200;CGSNL Gene Symbol=PEX14;CGSNL Gene Name=PEROXIN 14;Oryzabase Gene Symbol Synonym(s)=OsPex14%2C OsPex14p%2C OsPEX14;Oryzabase Gene Name Synonym(s)=peroxin 14;Note=Peroxisome membrane anchor protein Pex14p%2C N-terminal domain containing protein.;Transcript_evidence=AK062021 (DDBJ%2C Best hit),AK099093 (DDBJ%2C Best hit);ORF_evidence=B6TK69 (UniProt);GO=Cellular Component: peroxisome (GO:0005777),Cellular Component: membrane (GO:0016020);InterPro=Peroxisome membrane anchor protein Pex14p%2C N-terminal (IPR006785);NIAS_FLcDNA=001-043-F11,J023019E14;Oryzabase=14189;Expression=AK062021;TENOR=Os05t0101200-01;KEGG=Os05t0101200-01
Chr05	irgsp1_rep	five_prime_UTR	91716	91842	.	+	.	Parent=Os05t0101200-01
Chr05	irgsp1_rep	CDS	91843	91897	.	+	0	Parent=Os05t0101200-01
Chr05	irgsp1_rep	CDS	92001	92209	.	+	2	Parent=Os05t0101200-01
Chr05	irgsp1_rep	CDS	92301	92358	.	+	0	Parent=Os05t0101200-01
Chr05	irgsp1_rep	CDS	92616	92788	.	+	2	Parent=Os05t0101200-01
Chr05	irgsp1_rep	CDS	92873	93056	.	+	0	Parent=Os05t0101200-01
Chr05	irgsp1_rep	CDS	93168	93338	.	+	2	Parent=Os05t0101200-01
Chr05	irgsp1_rep	CDS	93828	93859	.	+	2	Parent=Os05t0101200-01
Chr05	irgsp1_rep	CDS	93941	93983	.	+	0	Parent=Os05t0101200-01
Chr05	irgsp1_rep	CDS	94113	94180	.	+	2	Parent=Os05t0101200-01
Chr05	irgsp1_rep	CDS	94906	94950	.	+	0	Parent=Os05t0101200-01
Chr05	irgsp1_rep	CDS	95040	95507	.	+	0	Parent=Os05t0101200-01
Chr05	irgsp1_rep	three_prime_UTR	95508	95725	.	+	.	Parent=Os05t0101200-01
Chr05	irgsp1_rep	mRNA	95909	96901	.	-	.	ID=Os05t0101300-01;Name=Os05t0101300-01;Locus_id=Os05g0101300;Note=Hypothetical conserved gene.;Transcript_evidence=AK318546 (DDBJ%2C Best hit);ORF_evidence=B9FLY8 (UniProt);NIAS_FLcDNA=J075120I07;TENOR=Os05t0101300-01;KEGG=Os05t0101300-01
Chr05	irgsp1_rep	five_prime_UTR	96833	96901	.	-	.	Parent=Os05t0101300-01
Chr05	irgsp1_rep	CDS	96547	96832	.	-	0	Parent=Os05t0101300-01
Chr05	irgsp1_rep	CDS	96099	96418	.	-	2	Parent=Os05t0101300-01
Chr05	irgsp1_rep	three_prime_UTR	95909	96098	.	-	.	Parent=Os05t0101300-01
Chr05	irgsp1_rep	mRNA	97385	99788	.	-	.	ID=Os05t0101400-01;Name=Os05t0101400-01;Locus_id=Os05g0101400;Note=Similar to 50S ribosomal protein L28%2C chloroplast precursor.;Transcript_evidence=AK067481 (DDBJ%2C Best hit);ORF_evidence=B6SXD6 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L28 (IPR001383);NIAS_FLcDNA=J013107H14;Expression=AK067481;TENOR=Os05t0101400-01;KEGG=Os05t0101400-01
Chr05	irgsp1_rep	five_prime_UTR	99722	99788	.	-	.	Parent=Os05t0101400-01
Chr05	irgsp1_rep	CDS	99541	99721	.	-	0	Parent=Os05t0101400-01
Chr05	irgsp1_rep	CDS	97693	97925	.	-	2	Parent=Os05t0101400-01
Chr05	irgsp1_rep	three_prime_UTR	97385	97692	.	-	.	Parent=Os05t0101400-01
Chr05	irgsp1_rep	mRNA	97377	97863	.	-	.	ID=Os05t0101400-02;Name=Os05t0101400-02;Locus_id=Os05g0101400;Note=Similar to 50S ribosomal protein L28.;Transcript_evidence=AK059567 (DDBJ%2C Best hit);ORF_evidence=NP_001149595.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L28 (IPR001383);NIAS_FLcDNA=001-029-H10;Expression=AK059567;TENOR=Os05t0101400-02;KEGG=Os05t0101400-02
Chr05	irgsp1_rep	CDS	97693	97863	.	-	0	Parent=Os05t0101400-02
Chr05	irgsp1_rep	three_prime_UTR	97377	97692	.	-	.	Parent=Os05t0101400-02
Chr05	irgsp1_rep	mRNA	101403	104149	.	-	.	ID=Os05t0101600-01;Name=Os05t0101600-01;Locus_id=Os05g0101600;Note=CytoChrome P450 family protein.;Transcript_evidence=AK101021 (DDBJ%2C Best hit);ORF_evidence=B9FK04 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J023149K19;Expression=AK101021;TENOR=Os05t0101600-01;KEGG=Os05t0101600-01
Chr05	irgsp1_rep	five_prime_UTR	103933	104149	.	-	.	Parent=Os05t0101600-01
Chr05	irgsp1_rep	CDS	102901	103932	.	-	0	Parent=Os05t0101600-01
Chr05	irgsp1_rep	CDS	102688	102768	.	-	0	Parent=Os05t0101600-01
Chr05	irgsp1_rep	CDS	102483	102561	.	-	0	Parent=Os05t0101600-01
Chr05	irgsp1_rep	CDS	102082	102188	.	-	2	Parent=Os05t0101600-01
Chr05	irgsp1_rep	CDS	101839	101993	.	-	0	Parent=Os05t0101600-01
Chr05	irgsp1_rep	CDS	101641	101743	.	-	1	Parent=Os05t0101600-01
Chr05	irgsp1_rep	three_prime_UTR	101403	101640	.	-	.	Parent=Os05t0101600-01
Chr05	irgsp1_rep	mRNA	113235	113499	.	-	.	ID=Os05t0101800-00;Name=Os05t0101800-00;Locus_id=Os05g0101800;Note=Non-protein coding transcript.;Transcript_evidence=EU955250 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0101800-00
Chr05	irgsp1_rep	exon	113235	113499	.	-	.	Parent=Os05t0101800-00
Chr05	irgsp1_rep	mRNA	116433	118268	.	-	.	ID=Os05t0102000-01;Name=Os05t0102000-01;Locus_id=Os05g0102000;CGSNL Gene Symbol=JMT1;CGSNL Gene Name=JASMONIC ACID CARBOXYL METHYLTRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=OsJMT1;Oryzabase Gene Name Synonym(s)=Jasmonic acid carboxyl methyltransferase 1;Note=SAM dependent carboxyl methyltransferase family protein.;Transcript_evidence=AK064690 (DDBJ%2C Best hit);ORF_evidence=Q5KQE5 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=SAM dependent carboxyl methyltransferase (IPR005299);NIAS_FLcDNA=002-116-E07;Oryzabase=20398;Expression=AK064690;TENOR=Os05t0102000-01;KEGG=Os05t0102000-01
Chr05	irgsp1_rep	five_prime_UTR	118199	118268	.	-	.	Parent=Os05t0102000-01
Chr05	irgsp1_rep	CDS	117077	118198	.	-	0	Parent=Os05t0102000-01
Chr05	irgsp1_rep	three_prime_UTR	116433	117076	.	-	.	Parent=Os05t0102000-01
Chr05	irgsp1_rep	mRNA	140783	143130	.	-	.	ID=Os05t0102200-01;Name=Os05t0102200-01;Locus_id=Os05g0102200;Note=Zinc finger%2C CCHC retroviral-type domain containing protein.;Transcript_evidence=AK070736 (DDBJ%2C Best hit);ORF_evidence=B8AWJ1 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Zinc finger%2C CCHC retroviral-type (IPR013084);NIAS_FLcDNA=J023062D21;Expression=AK070736;TENOR=Os05t0102200-01;KEGG=Os05t0102200-01
Chr05	irgsp1_rep	five_prime_UTR	142718	143130	.	-	.	Parent=Os05t0102200-01
Chr05	irgsp1_rep	CDS	141632	142717	.	-	0	Parent=Os05t0102200-01
Chr05	irgsp1_rep	three_prime_UTR	140783	141631	.	-	.	Parent=Os05t0102200-01
Chr05	irgsp1_rep	mRNA	145073	147497	.	+	.	ID=Os05t0102300-01;Name=Os05t0102300-01;Locus_id=Os05g0102300;Note=HAT dimerisation domain containing protein.;Transcript_evidence=AK106387 (DDBJ%2C Best hit);ORF_evidence=longestORF;GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein dimerization activity (GO:0046983);InterPro=HAT dimerisation (IPR008906),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=002-102-E07;Expression=AK106387;TENOR=Os05t0102300-01;KEGG=Os05t0102300-01
Chr05	irgsp1_rep	five_prime_UTR	145073	145307	.	+	.	Parent=Os05t0102300-01
Chr05	irgsp1_rep	CDS	145308	145615	.	+	0	Parent=Os05t0102300-01
Chr05	irgsp1_rep	CDS	145757	147006	.	+	1	Parent=Os05t0102300-01
Chr05	irgsp1_rep	CDS	147103	147167	.	+	2	Parent=Os05t0102300-01
Chr05	irgsp1_rep	CDS	147271	147276	.	+	0	Parent=Os05t0102300-01
Chr05	irgsp1_rep	three_prime_UTR	147277	147497	.	+	.	Parent=Os05t0102300-01
Chr05	irgsp1_rep	mRNA	148472	149341	.	+	.	ID=Os05t0102400-00;Name=Os05t0102400-00;Locus_id=Os05g0102400;Note=Similar to exonuclease.;Transcript_evidence=EU972791 (DDBJ);ORF_evidence=NP_001151909.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: exonuclease activity (GO:0004527);InterPro=Exonuclease (IPR006055),Ribonuclease H-like (IPR012337),Exonuclease%2C RNase T/DNA polymerase III (IPR013520);TENOR=Os05t0102400-00;KEGG=Os05t0102400-00
Chr05	irgsp1_rep	five_prime_UTR	148472	148561	.	+	.	Parent=Os05t0102400-00
Chr05	irgsp1_rep	CDS	148562	149341	.	+	0	Parent=Os05t0102400-00
Chr05	irgsp1_rep	mRNA	149964	152034	.	-	.	ID=Os05t0102500-01;Name=Os05t0102500-01;Locus_id=Os05g0102500;Note=Conserved hypothetical protein.;Transcript_evidence=AK073341 (DDBJ%2C Best hit);ORF_evidence=B9FLZ2 (UniProt);NIAS_FLcDNA=J033030P10;TENOR=Os05t0102500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	151907	152034	.	-	.	Parent=Os05t0102500-01
Chr05	irgsp1_rep	CDS	151803	151906	.	-	0	Parent=Os05t0102500-01
Chr05	irgsp1_rep	CDS	151177	151383	.	-	1	Parent=Os05t0102500-01
Chr05	irgsp1_rep	CDS	150708	150768	.	-	1	Parent=Os05t0102500-01
Chr05	irgsp1_rep	CDS	150320	150589	.	-	0	Parent=Os05t0102500-01
Chr05	irgsp1_rep	three_prime_UTR	149964	150319	.	-	.	Parent=Os05t0102500-01
Chr05	irgsp1_rep	mRNA	149964	152021	.	-	.	ID=Os05t0102500-02;Name=Os05t0102500-02;Locus_id=Os05g0102500;Note=Conserved hypothetical protein.;Transcript_evidence=AK063894 (DDBJ%2C Best hit);ORF_evidence=B9FLZ2 (UniProt);NIAS_FLcDNA=001-122-G09;TENOR=Os05t0102500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	152020	152021	.	-	.	Parent=Os05t0102500-02
Chr05	irgsp1_rep	CDS	151946	152019	.	-	0	Parent=Os05t0102500-02
Chr05	irgsp1_rep	CDS	151177	151383	.	-	1	Parent=Os05t0102500-02
Chr05	irgsp1_rep	CDS	150708	150768	.	-	1	Parent=Os05t0102500-02
Chr05	irgsp1_rep	CDS	150320	150589	.	-	0	Parent=Os05t0102500-02
Chr05	irgsp1_rep	three_prime_UTR	149964	150319	.	-	.	Parent=Os05t0102500-02
Chr05	irgsp1_rep	mRNA	155365	160193	.	+	.	ID=Os05t0102600-01;Name=Os05t0102600-01;Locus_id=Os05g0102600;Oryzabase Gene Symbol Synonym(s)=OsRFPHC-11;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPHC-11%2C RING-HC protein 11;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK101136 (DDBJ%2C Best hit);ORF_evidence=E5DD00 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: histone binding (GO:0042393);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C PHD-type (IPR001965),SRA-YDG (IPR003105),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957),Zinc finger%2C PHD-type%2C conserved site (IPR019786),Zinc finger%2C PHD-finger (IPR019787);NIAS_FLcDNA=J033026H11;Oryzabase=11794;Expression=AK101136;TENOR=Os05t0102600-01;KEGG=Os05t0102600-01
Chr05	irgsp1_rep	five_prime_UTR	155365	155418	.	+	.	Parent=Os05t0102600-01
Chr05	irgsp1_rep	CDS	155419	155856	.	+	0	Parent=Os05t0102600-01
Chr05	irgsp1_rep	CDS	156943	157475	.	+	0	Parent=Os05t0102600-01
Chr05	irgsp1_rep	CDS	157576	157701	.	+	1	Parent=Os05t0102600-01
Chr05	irgsp1_rep	CDS	158071	158170	.	+	1	Parent=Os05t0102600-01
Chr05	irgsp1_rep	CDS	158295	158359	.	+	0	Parent=Os05t0102600-01
Chr05	irgsp1_rep	CDS	158463	158565	.	+	1	Parent=Os05t0102600-01
Chr05	irgsp1_rep	CDS	158676	158814	.	+	0	Parent=Os05t0102600-01
Chr05	irgsp1_rep	CDS	158922	159136	.	+	2	Parent=Os05t0102600-01
Chr05	irgsp1_rep	CDS	159218	159868	.	+	0	Parent=Os05t0102600-01
Chr05	irgsp1_rep	three_prime_UTR	159869	160193	.	+	.	Parent=Os05t0102600-01
Chr05	irgsp1_rep	mRNA	155358	155678	.	-	.	ID=Os05t0102700-00;Name=Os05t0102700-00;Locus_id=Os05g0102700;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os05t0102700-00
Chr05	irgsp1_rep	CDS	155358	155678	.	-	0	Parent=Os05t0102700-00
Chr05	irgsp1_rep	mRNA	160762	167722	.	-	.	ID=Os05t0102800-01;Name=Os05t0102800-01;Locus_id=Os05g0102800;Note=Similar to AML1.;Transcript_evidence=AK121634 (DDBJ%2C Best hit);ORF_evidence=Q75M35 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),RNA recognition motif 2 (IPR007201),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033050M15;Expression=AK121634;TENOR=Os05t0102800-01;KEGG=Os05t0102800-01
Chr05	irgsp1_rep	five_prime_UTR	167189	167722	.	-	.	Parent=Os05t0102800-01
Chr05	irgsp1_rep	five_prime_UTR	166656	166771	.	-	.	Parent=Os05t0102800-01
Chr05	irgsp1_rep	CDS	166548	166655	.	-	0	Parent=Os05t0102800-01
Chr05	irgsp1_rep	CDS	166395	166440	.	-	0	Parent=Os05t0102800-01
Chr05	irgsp1_rep	CDS	165451	165768	.	-	2	Parent=Os05t0102800-01
Chr05	irgsp1_rep	CDS	164891	165291	.	-	2	Parent=Os05t0102800-01
Chr05	irgsp1_rep	CDS	164637	164795	.	-	0	Parent=Os05t0102800-01
Chr05	irgsp1_rep	CDS	164138	164254	.	-	0	Parent=Os05t0102800-01
Chr05	irgsp1_rep	CDS	163908	164059	.	-	0	Parent=Os05t0102800-01
Chr05	irgsp1_rep	CDS	163416	163495	.	-	1	Parent=Os05t0102800-01
Chr05	irgsp1_rep	CDS	162948	163340	.	-	2	Parent=Os05t0102800-01
Chr05	irgsp1_rep	CDS	162178	162772	.	-	2	Parent=Os05t0102800-01
Chr05	irgsp1_rep	CDS	161989	162073	.	-	1	Parent=Os05t0102800-01
Chr05	irgsp1_rep	CDS	161836	161904	.	-	0	Parent=Os05t0102800-01
Chr05	irgsp1_rep	CDS	161423	161602	.	-	0	Parent=Os05t0102800-01
Chr05	irgsp1_rep	CDS	161112	161276	.	-	0	Parent=Os05t0102800-01
Chr05	irgsp1_rep	three_prime_UTR	160762	161111	.	-	.	Parent=Os05t0102800-01
Chr05	irgsp1_rep	mRNA	160762	167000	.	-	.	ID=Os05t0102800-02;Name=Os05t0102800-02;Locus_id=Os05g0102800;Note=Similar to AML1.;Transcript_evidence=AK074004 (DDBJ%2C Best hit);ORF_evidence=Q75M35 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),RNA recognition motif 2 (IPR007201),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033075L18;Expression=AK074004;TENOR=Os05t0102800-02;KEGG=Os05t0102800-02
Chr05	irgsp1_rep	five_prime_UTR	166870	167000	.	-	.	Parent=Os05t0102800-02
Chr05	irgsp1_rep	five_prime_UTR	166656	166771	.	-	.	Parent=Os05t0102800-02
Chr05	irgsp1_rep	CDS	166548	166655	.	-	0	Parent=Os05t0102800-02
Chr05	irgsp1_rep	CDS	166395	166440	.	-	0	Parent=Os05t0102800-02
Chr05	irgsp1_rep	CDS	165451	165768	.	-	2	Parent=Os05t0102800-02
Chr05	irgsp1_rep	CDS	164891	165291	.	-	2	Parent=Os05t0102800-02
Chr05	irgsp1_rep	CDS	164637	164795	.	-	0	Parent=Os05t0102800-02
Chr05	irgsp1_rep	CDS	164138	164254	.	-	0	Parent=Os05t0102800-02
Chr05	irgsp1_rep	CDS	163908	164059	.	-	0	Parent=Os05t0102800-02
Chr05	irgsp1_rep	CDS	163416	163495	.	-	1	Parent=Os05t0102800-02
Chr05	irgsp1_rep	CDS	162948	163340	.	-	2	Parent=Os05t0102800-02
Chr05	irgsp1_rep	CDS	162178	162772	.	-	2	Parent=Os05t0102800-02
Chr05	irgsp1_rep	CDS	161989	162073	.	-	1	Parent=Os05t0102800-02
Chr05	irgsp1_rep	CDS	161836	161904	.	-	0	Parent=Os05t0102800-02
Chr05	irgsp1_rep	CDS	161423	161602	.	-	0	Parent=Os05t0102800-02
Chr05	irgsp1_rep	CDS	161112	161276	.	-	0	Parent=Os05t0102800-02
Chr05	irgsp1_rep	three_prime_UTR	160762	161111	.	-	.	Parent=Os05t0102800-02
Chr05	irgsp1_rep	mRNA	160740	166869	.	-	.	ID=Os05t0102800-03;Name=Os05t0102800-03;Locus_id=Os05g0102800;Note=Similar to AML1.;Transcript_evidence=AK120322 (DDBJ%2C Best hit);ORF_evidence=Q75M35 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),RNA recognition motif 2 (IPR007201),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013057C20;Expression=AK120322;TENOR=Os05t0102800-03;KEGG=Os05t0102800-03
Chr05	irgsp1_rep	five_prime_UTR	166656	166869	.	-	.	Parent=Os05t0102800-03
Chr05	irgsp1_rep	CDS	166548	166655	.	-	0	Parent=Os05t0102800-03
Chr05	irgsp1_rep	CDS	166395	166440	.	-	0	Parent=Os05t0102800-03
Chr05	irgsp1_rep	CDS	165451	165768	.	-	2	Parent=Os05t0102800-03
Chr05	irgsp1_rep	CDS	164891	165291	.	-	2	Parent=Os05t0102800-03
Chr05	irgsp1_rep	CDS	164637	164795	.	-	0	Parent=Os05t0102800-03
Chr05	irgsp1_rep	CDS	164138	164254	.	-	0	Parent=Os05t0102800-03
Chr05	irgsp1_rep	CDS	163908	164059	.	-	0	Parent=Os05t0102800-03
Chr05	irgsp1_rep	CDS	163416	163495	.	-	1	Parent=Os05t0102800-03
Chr05	irgsp1_rep	CDS	162948	163340	.	-	2	Parent=Os05t0102800-03
Chr05	irgsp1_rep	CDS	162178	162772	.	-	2	Parent=Os05t0102800-03
Chr05	irgsp1_rep	CDS	161989	162073	.	-	1	Parent=Os05t0102800-03
Chr05	irgsp1_rep	CDS	161836	161904	.	-	0	Parent=Os05t0102800-03
Chr05	irgsp1_rep	CDS	161423	161602	.	-	0	Parent=Os05t0102800-03
Chr05	irgsp1_rep	CDS	161112	161276	.	-	0	Parent=Os05t0102800-03
Chr05	irgsp1_rep	three_prime_UTR	160740	161111	.	-	.	Parent=Os05t0102800-03
Chr05	irgsp1_rep	mRNA	160715	165048	.	-	.	ID=Os05t0102800-04;Name=Os05t0102800-04;Locus_id=Os05g0102800;Note=Similar to AML6.;Transcript_evidence=AK105753 (DDBJ%2C Best hit);ORF_evidence=Q75M35 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),RNA recognition motif 2 (IPR007201),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-202-C02;Expression=AK105753;TENOR=Os05t0102800-04;KEGG=Os05t0102800-04
Chr05	irgsp1_rep	five_prime_UTR	165047	165048	.	-	.	Parent=Os05t0102800-04
Chr05	irgsp1_rep	CDS	164891	165046	.	-	0	Parent=Os05t0102800-04
Chr05	irgsp1_rep	CDS	164637	164795	.	-	0	Parent=Os05t0102800-04
Chr05	irgsp1_rep	CDS	164138	164254	.	-	0	Parent=Os05t0102800-04
Chr05	irgsp1_rep	CDS	163908	164059	.	-	0	Parent=Os05t0102800-04
Chr05	irgsp1_rep	CDS	163416	163495	.	-	1	Parent=Os05t0102800-04
Chr05	irgsp1_rep	CDS	162948	163340	.	-	2	Parent=Os05t0102800-04
Chr05	irgsp1_rep	CDS	162178	162772	.	-	2	Parent=Os05t0102800-04
Chr05	irgsp1_rep	CDS	161989	162073	.	-	1	Parent=Os05t0102800-04
Chr05	irgsp1_rep	CDS	161836	161904	.	-	0	Parent=Os05t0102800-04
Chr05	irgsp1_rep	CDS	161423	161602	.	-	0	Parent=Os05t0102800-04
Chr05	irgsp1_rep	CDS	161112	161276	.	-	0	Parent=Os05t0102800-04
Chr05	irgsp1_rep	three_prime_UTR	160715	161111	.	-	.	Parent=Os05t0102800-04
Chr05	irgsp1_rep	mRNA	174438	177558	.	+	.	ID=Os05t0102900-01;Name=Os05t0102900-01;Locus_id=Os05g0102900;Note=Snf7 family protein.;Transcript_evidence=AK065749 (DDBJ%2C Best hit);ORF_evidence=B6TYU1 (UniProt);GO=Biological Process: protein transport (GO:0015031);InterPro=Snf7 (IPR005024);NIAS_FLcDNA=J013042C01;Expression=AK065749;TENOR=Os05t0102900-01;KEGG=Os05t0102900-01
Chr05	irgsp1_rep	five_prime_UTR	174438	174617	.	+	.	Parent=Os05t0102900-01
Chr05	irgsp1_rep	CDS	174618	174686	.	+	0	Parent=Os05t0102900-01
Chr05	irgsp1_rep	CDS	174786	174937	.	+	0	Parent=Os05t0102900-01
Chr05	irgsp1_rep	CDS	175623	175716	.	+	1	Parent=Os05t0102900-01
Chr05	irgsp1_rep	CDS	175811	175882	.	+	0	Parent=Os05t0102900-01
Chr05	irgsp1_rep	CDS	176020	176131	.	+	0	Parent=Os05t0102900-01
Chr05	irgsp1_rep	CDS	176524	176672	.	+	2	Parent=Os05t0102900-01
Chr05	irgsp1_rep	CDS	177276	177326	.	+	0	Parent=Os05t0102900-01
Chr05	irgsp1_rep	three_prime_UTR	177327	177558	.	+	.	Parent=Os05t0102900-01
Chr05	irgsp1_rep	mRNA	174529	177543	.	+	.	ID=Os05t0102900-02;Name=Os05t0102900-02;Locus_id=Os05g0102900;Note=Snf7 family protein.;Transcript_evidence=AK104101 (DDBJ%2C Best hit),AK061764 (DDBJ%2C Best hit);ORF_evidence=B6TYU1 (UniProt);GO=Biological Process: protein transport (GO:0015031);InterPro=Snf7 (IPR005024);NIAS_FLcDNA=006-201-H05,001-039-B05;Expression=AK104101;TENOR=Os05t0102900-02;KEGG=Os05t0102900-02
Chr05	irgsp1_rep	five_prime_UTR	174529	174617	.	+	.	Parent=Os05t0102900-02
Chr05	irgsp1_rep	CDS	174618	174686	.	+	0	Parent=Os05t0102900-02
Chr05	irgsp1_rep	CDS	174786	174937	.	+	0	Parent=Os05t0102900-02
Chr05	irgsp1_rep	CDS	175623	175716	.	+	1	Parent=Os05t0102900-02
Chr05	irgsp1_rep	CDS	175811	175882	.	+	0	Parent=Os05t0102900-02
Chr05	irgsp1_rep	CDS	176020	176131	.	+	0	Parent=Os05t0102900-02
Chr05	irgsp1_rep	CDS	176524	176672	.	+	2	Parent=Os05t0102900-02
Chr05	irgsp1_rep	CDS	177276	177326	.	+	0	Parent=Os05t0102900-02
Chr05	irgsp1_rep	three_prime_UTR	177327	177543	.	+	.	Parent=Os05t0102900-02
Chr05	irgsp1_rep	mRNA	178860	181534	.	-	.	ID=Os05t0103000-01;Name=Os05t0103000-01;Locus_id=Os05g0103000;Oryzabase Gene Symbol Synonym(s)=OsbHLH083;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 083;Note=Similar to MYC1.;Transcript_evidence=AK065864 (DDBJ%2C Best hit);ORF_evidence=A8TLW5 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J013044E05;Oryzabase=15370;Expression=AK065864;TENOR=Os05t0103000-01;KEGG=Os05t0103000-01
Chr05	irgsp1_rep	five_prime_UTR	181489	181534	.	-	.	Parent=Os05t0103000-01
Chr05	irgsp1_rep	CDS	181117	181488	.	-	0	Parent=Os05t0103000-01
Chr05	irgsp1_rep	CDS	180454	180669	.	-	0	Parent=Os05t0103000-01
Chr05	irgsp1_rep	CDS	180190	180324	.	-	0	Parent=Os05t0103000-01
Chr05	irgsp1_rep	CDS	179986	180072	.	-	0	Parent=Os05t0103000-01
Chr05	irgsp1_rep	CDS	179732	179833	.	-	0	Parent=Os05t0103000-01
Chr05	irgsp1_rep	CDS	179429	179536	.	-	0	Parent=Os05t0103000-01
Chr05	irgsp1_rep	three_prime_UTR	179406	179428	.	-	.	Parent=Os05t0103000-01
Chr05	irgsp1_rep	three_prime_UTR	178860	179273	.	-	.	Parent=Os05t0103000-01
Chr05	irgsp1_rep	mRNA	182380	184740	.	-	.	ID=Os05t0103100-01;Name=Os05t0103100-01;Locus_id=Os05g0103100;Note=Translocon-associated beta family protein.;Transcript_evidence=AK103317 (DDBJ%2C Best hit);ORF_evidence=B6SN99 (UniProt);GO=Cellular Component: endoplasmic reticulum (GO:0005783),Cellular Component: integral to membrane (GO:0016021);InterPro=Translocon-associated beta (IPR008856);NIAS_FLcDNA=J033125H15;Expression=AK103317;TENOR=Os05t0103100-01;KEGG=Os05t0103100-01
Chr05	irgsp1_rep	five_prime_UTR	184710	184740	.	-	.	Parent=Os05t0103100-01
Chr05	irgsp1_rep	CDS	184531	184709	.	-	0	Parent=Os05t0103100-01
Chr05	irgsp1_rep	CDS	183617	183715	.	-	1	Parent=Os05t0103100-01
Chr05	irgsp1_rep	CDS	183422	183530	.	-	1	Parent=Os05t0103100-01
Chr05	irgsp1_rep	CDS	182998	183073	.	-	0	Parent=Os05t0103100-01
Chr05	irgsp1_rep	CDS	182525	182739	.	-	2	Parent=Os05t0103100-01
Chr05	irgsp1_rep	three_prime_UTR	182380	182524	.	-	.	Parent=Os05t0103100-01
Chr05	irgsp1_rep	mRNA	185654	188484	.	+	.	ID=Os05t0103200-01;Name=Os05t0103200-01;Locus_id=Os05g0103200;RAP-DB Gene Symbol Synonym(s)=OsCYP20-2;RAP-DB Gene Name Synonym(s)=cyclophilin 20-2;CGSNL Gene Symbol=CYP20-2;CGSNL Gene Name=CYCLOPHILIN 20-2;Oryzabase Gene Symbol Synonym(s)=OsCYP20-2%2C OsCYP-11;Oryzabase Gene Name Synonym(s)=cyclophilin 20-2%2C rice thylakoid lumenal cyclophilin OsCYP20-2%2C cyclophilin 11;Note=Cyclophilin%2C Mediation of chilling tolerance and cell elongation;Transcript_evidence=AK119201,AK061557;ORF_evidence=Q75M32;GO=Biological Process: protein peptidyl-prolyl isomerization (GO:0000413),Biological Process: protein folding (GO:0006457),Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);InterPro=Cyclophilin-like domain superfamily (IPR029000),Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain (IPR002130),Cyclophilin-type peptidyl-prolyl cis-trans isomerase%2C conserved site (IPR020892);NIAS_FLcDNA=001-041-D05,006-311-C10;Manual Curation=November 22%2C 2019;Literature_PMID=31736073,22041789;Oryzabase=10023;TENOR=Os05t0103200-01;Subcellular location=chloroplast (GO:0009507), nucleus (GO:0005634)
Chr05	irgsp1_rep	five_prime_UTR	185654	185743	.	+	.	Parent=Os05t0103200-01
Chr05	irgsp1_rep	CDS	185744	185773	.	+	0	Parent=Os05t0103200-01
Chr05	irgsp1_rep	CDS	185873	186061	.	+	0	Parent=Os05t0103200-01
Chr05	irgsp1_rep	CDS	186814	186964	.	+	0	Parent=Os05t0103200-01
Chr05	irgsp1_rep	CDS	187069	187157	.	+	2	Parent=Os05t0103200-01
Chr05	irgsp1_rep	CDS	187736	187790	.	+	0	Parent=Os05t0103200-01
Chr05	irgsp1_rep	CDS	187878	187963	.	+	2	Parent=Os05t0103200-01
Chr05	irgsp1_rep	CDS	188050	188202	.	+	0	Parent=Os05t0103200-01
Chr05	irgsp1_rep	three_prime_UTR	188203	188484	.	+	.	Parent=Os05t0103200-01
Chr05	irgsp1_rep	mRNA	185688	188469	.	+	.	ID=Os05t0103200-02;Name=Os05t0103200-02;Locus_id=Os05g0103200;CGSNL Gene Symbol=CYP20-2;CGSNL Gene Name=CYCLOPHILIN 20-2;Oryzabase Gene Symbol Synonym(s)=OsCYP20-2%2C OsCYP-11%2C OsNuCYP20-2;Oryzabase Gene Name Synonym(s)=cyclophilin 20-2%2C rice thylakoid lumenal cyclophilin OsCYP20-2%2C cyclophilin 11;Note=Cyclophilin-like domain containing protein.;Transcript_evidence=AK104772 (DDBJ%2C Best hit),AK104195 (DDBJ%2C Best hit),AK104478 (DDBJ%2C Best hit),AK104627 (DDBJ%2C Best hit);ORF_evidence=A2XZE6 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);InterPro=Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type (IPR002130),Cyclophilin-like (IPR015891),Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type%2C conserved site (IPR020892);NIAS_FLcDNA=001-039-A09,006-303-G10,006-301-F07,006-310-B08;Oryzabase=10023;TENOR=Os05t0103200-02
Chr05	irgsp1_rep	five_prime_UTR	185688	185743	.	+	.	Parent=Os05t0103200-02
Chr05	irgsp1_rep	CDS	185744	185773	.	+	0	Parent=Os05t0103200-02
Chr05	irgsp1_rep	CDS	185873	186061	.	+	0	Parent=Os05t0103200-02
Chr05	irgsp1_rep	CDS	186814	186964	.	+	0	Parent=Os05t0103200-02
Chr05	irgsp1_rep	CDS	187069	187157	.	+	2	Parent=Os05t0103200-02
Chr05	irgsp1_rep	CDS	187736	187790	.	+	0	Parent=Os05t0103200-02
Chr05	irgsp1_rep	CDS	187878	187963	.	+	2	Parent=Os05t0103200-02
Chr05	irgsp1_rep	CDS	188050	188202	.	+	0	Parent=Os05t0103200-02
Chr05	irgsp1_rep	three_prime_UTR	188203	188469	.	+	.	Parent=Os05t0103200-02
Chr05	irgsp1_rep	mRNA	189770	191128	.	+	.	ID=Os05t0103300-01;Name=Os05t0103300-01;Locus_id=Os05g0103300;Note=Similar to AT.I.24-5 protein (Fragment).;Transcript_evidence=AK071540 (DDBJ%2C Best hit);ORF_evidence=Q01LF6 (UniProt);InterPro=Protein of unknown function DUF3339 (IPR021775);NIAS_FLcDNA=J023101E05;Expression=AK071540;TENOR=Os05t0103300-01;KEGG=Os05t0103300-01
Chr05	irgsp1_rep	five_prime_UTR	189770	189887	.	+	.	Parent=Os05t0103300-01
Chr05	irgsp1_rep	CDS	189888	190106	.	+	0	Parent=Os05t0103300-01
Chr05	irgsp1_rep	three_prime_UTR	190107	190129	.	+	.	Parent=Os05t0103300-01
Chr05	irgsp1_rep	three_prime_UTR	190807	191128	.	+	.	Parent=Os05t0103300-01
Chr05	irgsp1_rep	mRNA	189772	190288	.	+	.	ID=Os05t0103300-02;Name=Os05t0103300-02;Locus_id=Os05g0103300;Note=Similar to AT.I.24-5 protein (Fragment).;Transcript_evidence=AK062996 (DDBJ%2C Best hit);ORF_evidence=Q01LF6 (UniProt);InterPro=Protein of unknown function DUF3339 (IPR021775);NIAS_FLcDNA=001-109-G10;Expression=AK062996;TENOR=Os05t0103300-02;KEGG=Os05t0103300-02
Chr05	irgsp1_rep	five_prime_UTR	189772	189887	.	+	.	Parent=Os05t0103300-02
Chr05	irgsp1_rep	CDS	189888	190106	.	+	0	Parent=Os05t0103300-02
Chr05	irgsp1_rep	three_prime_UTR	190107	190288	.	+	.	Parent=Os05t0103300-02
Chr05	irgsp1_rep	mRNA	193291	193927	.	+	.	ID=Os05t0103400-01;Name=Os05t0103400-01;Locus_id=Os05g0103400;Note=Protein of unknown function DUF3339 domain containing protein.;Transcript_evidence=AK066339 (DDBJ%2C Best hit);ORF_evidence=A2XZE8 (UniProt);InterPro=Protein of unknown function DUF3339 (IPR021775);NIAS_FLcDNA=J013062F19;Expression=AK066339;TENOR=Os05t0103400-01;KEGG=Os05t0103400-01
Chr05	irgsp1_rep	five_prime_UTR	193291	193468	.	+	.	Parent=Os05t0103400-01
Chr05	irgsp1_rep	CDS	193469	193678	.	+	0	Parent=Os05t0103400-01
Chr05	irgsp1_rep	three_prime_UTR	193679	193927	.	+	.	Parent=Os05t0103400-01
Chr05	irgsp1_rep	mRNA	195749	197253	.	-	.	ID=Os05t0103500-01;Name=Os05t0103500-01;Locus_id=Os05g0103500;Note=CHCH domain containing protein.;Transcript_evidence=AK102829 (DDBJ%2C Best hit),AK060306 (DDBJ%2C Best hit);ORF_evidence=B6T5B2 (UniProt);NIAS_FLcDNA=J033109D16,001-007-A10;Expression=AK102829;TENOR=Os05t0103500-01;KEGG=Os05t0103500-01
Chr05	irgsp1_rep	five_prime_UTR	197094	197253	.	-	.	Parent=Os05t0103500-01
Chr05	irgsp1_rep	five_prime_UTR	196506	196527	.	-	.	Parent=Os05t0103500-01
Chr05	irgsp1_rep	CDS	195963	196505	.	-	0	Parent=Os05t0103500-01
Chr05	irgsp1_rep	three_prime_UTR	195749	195962	.	-	.	Parent=Os05t0103500-01
Chr05	irgsp1_rep	mRNA	197718	201616	.	-	.	ID=Os05t0103600-01;Name=Os05t0103600-01;Locus_id=Os05g0103600;Note=Similar to Ankyrin-like protein.;Transcript_evidence=AK102584 (DDBJ%2C Best hit);ORF_evidence=B6TBS1 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J033098E05;Expression=AK102584;TENOR=Os05t0103600-01;KEGG=Os05t0103600-01
Chr05	irgsp1_rep	five_prime_UTR	201469	201616	.	-	.	Parent=Os05t0103600-01
Chr05	irgsp1_rep	CDS	201441	201468	.	-	0	Parent=Os05t0103600-01
Chr05	irgsp1_rep	CDS	201290	201352	.	-	2	Parent=Os05t0103600-01
Chr05	irgsp1_rep	CDS	201033	201206	.	-	2	Parent=Os05t0103600-01
Chr05	irgsp1_rep	CDS	200819	200950	.	-	2	Parent=Os05t0103600-01
Chr05	irgsp1_rep	CDS	200528	200667	.	-	2	Parent=Os05t0103600-01
Chr05	irgsp1_rep	CDS	200087	200173	.	-	0	Parent=Os05t0103600-01
Chr05	irgsp1_rep	CDS	199579	199704	.	-	0	Parent=Os05t0103600-01
Chr05	irgsp1_rep	CDS	199024	199170	.	-	0	Parent=Os05t0103600-01
Chr05	irgsp1_rep	CDS	198883	198945	.	-	0	Parent=Os05t0103600-01
Chr05	irgsp1_rep	CDS	198666	198767	.	-	0	Parent=Os05t0103600-01
Chr05	irgsp1_rep	CDS	198391	198561	.	-	0	Parent=Os05t0103600-01
Chr05	irgsp1_rep	CDS	198215	198294	.	-	0	Parent=Os05t0103600-01
Chr05	irgsp1_rep	CDS	197977	198046	.	-	1	Parent=Os05t0103600-01
Chr05	irgsp1_rep	three_prime_UTR	197718	197976	.	-	.	Parent=Os05t0103600-01
Chr05	irgsp1_rep	mRNA	202000	205705	.	-	.	ID=Os05t0103700-01;Name=Os05t0103700-01;Locus_id=Os05g0103700;Note=Protein of unknown function DUF1664 family protein.;Transcript_evidence=AK065617 (DDBJ%2C Best hit);ORF_evidence=B9EYV6 (UniProt);InterPro=Protein of unknown function DUF1664 (IPR012458);NIAS_FLcDNA=J013029F11;Expression=AK065617;TENOR=Os05t0103700-01;KEGG=Os05t0103700-01
Chr05	irgsp1_rep	five_prime_UTR	205565	205705	.	-	.	Parent=Os05t0103700-01
Chr05	irgsp1_rep	CDS	205528	205564	.	-	0	Parent=Os05t0103700-01
Chr05	irgsp1_rep	CDS	204932	205008	.	-	2	Parent=Os05t0103700-01
Chr05	irgsp1_rep	CDS	204671	204824	.	-	0	Parent=Os05t0103700-01
Chr05	irgsp1_rep	CDS	204070	204140	.	-	2	Parent=Os05t0103700-01
Chr05	irgsp1_rep	CDS	203766	203867	.	-	0	Parent=Os05t0103700-01
Chr05	irgsp1_rep	CDS	203564	203653	.	-	0	Parent=Os05t0103700-01
Chr05	irgsp1_rep	CDS	203395	203469	.	-	0	Parent=Os05t0103700-01
Chr05	irgsp1_rep	CDS	203252	203284	.	-	0	Parent=Os05t0103700-01
Chr05	irgsp1_rep	CDS	203071	203134	.	-	0	Parent=Os05t0103700-01
Chr05	irgsp1_rep	CDS	202881	202936	.	-	2	Parent=Os05t0103700-01
Chr05	irgsp1_rep	CDS	202706	202795	.	-	0	Parent=Os05t0103700-01
Chr05	irgsp1_rep	CDS	202357	202608	.	-	0	Parent=Os05t0103700-01
Chr05	irgsp1_rep	three_prime_UTR	202000	202356	.	-	.	Parent=Os05t0103700-01
Chr05	irgsp1_rep	mRNA	207597	209481	.	-	.	ID=Os05t0103800-00;Name=Os05t0103800-00;Locus_id=Os05g0103800;Note=Conserved hypothetical protein.;Transcript_evidence=CT828136 (DDBJ%2C Best hit);ORF_evidence=NP_001054398.2 (RefSeq);TENOR=Os05t0103800-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	209399	209481	.	-	0	Parent=Os05t0103800-00
Chr05	irgsp1_rep	CDS	207853	208075	.	-	1	Parent=Os05t0103800-00
Chr05	irgsp1_rep	three_prime_UTR	207597	207852	.	-	.	Parent=Os05t0103800-00
Chr05	irgsp1_rep	mRNA	213855	217588	.	+	.	ID=Os05t0104000-00;Name=Os05t0104000-00;Locus_id=Os05g0104000;Oryzabase Gene Symbol Synonym(s)=OsFH14%2C FH14;Oryzabase Gene Name Synonym(s)=formin homology 14%2C forming family protein 14%2C FH2 protein 14%2C FH2 domain protein 14;Note=Actin-binding FH2 domain containing protein.;Transcript_evidence=tplb0016a20 (Wheat FLcDNA);ORF_evidence=Q0DLG0 (UniProt);GO=Biological Process: cellular component organization (GO:0016043),Biological Process: actin cytoskeleton organization (GO:0030036),Molecular Function: actin binding (GO:0003779);InterPro=Actin-binding FH2/DRF autoregulatory (IPR003104),Actin-binding FH2 (IPR015425);Oryzabase=21784;TENOR=Os05t0104000-00;KEGG=Os05t0104000-00
Chr05	irgsp1_rep	CDS	213855	215197	.	+	0	Parent=Os05t0104000-00
Chr05	irgsp1_rep	CDS	215312	215472	.	+	1	Parent=Os05t0104000-00
Chr05	irgsp1_rep	CDS	216217	216461	.	+	2	Parent=Os05t0104000-00
Chr05	irgsp1_rep	CDS	216675	217418	.	+	0	Parent=Os05t0104000-00
Chr05	irgsp1_rep	three_prime_UTR	217419	217588	.	+	.	Parent=Os05t0104000-00
Chr05	irgsp1_rep	mRNA	219001	226298	.	+	.	ID=Os05t0104100-01;Name=Os05t0104100-01;Locus_id=Os05g0104100;Oryzabase Gene Symbol Synonym(s)=OsFH14%2C FH14;Oryzabase Gene Name Synonym(s)=formin homology 14%2C forming family protein 14%2C FH2 protein 14%2C FH2 domain protein 14;Note=Vps53-like%2C N-terminal domain containing protein.;Transcript_evidence=AK105679 (DDBJ%2C Best hit);ORF_evidence=B8AWK1 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Molecular Function: small GTPase regulator activity (GO:0005083);InterPro=Clathrin%2C heavy chain/VPS%2C 7-fold repeat (IPR000547),Citron-like (IPR001180),Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1 (IPR019452),Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2 (IPR019453);NIAS_FLcDNA=001-201-B03;Oryzabase=21784;Expression=AK105679;TENOR=Os05t0104100-01;KEGG=Os05t0104100-01
Chr05	irgsp1_rep	five_prime_UTR	219001	219113	.	+	.	Parent=Os05t0104100-01
Chr05	irgsp1_rep	CDS	219114	220052	.	+	0	Parent=Os05t0104100-01
Chr05	irgsp1_rep	CDS	220316	220591	.	+	0	Parent=Os05t0104100-01
Chr05	irgsp1_rep	CDS	221323	221519	.	+	0	Parent=Os05t0104100-01
Chr05	irgsp1_rep	CDS	221608	221749	.	+	1	Parent=Os05t0104100-01
Chr05	irgsp1_rep	CDS	221929	222207	.	+	0	Parent=Os05t0104100-01
Chr05	irgsp1_rep	CDS	222286	222358	.	+	0	Parent=Os05t0104100-01
Chr05	irgsp1_rep	CDS	222676	222724	.	+	2	Parent=Os05t0104100-01
Chr05	irgsp1_rep	CDS	223514	223778	.	+	1	Parent=Os05t0104100-01
Chr05	irgsp1_rep	CDS	223921	223976	.	+	0	Parent=Os05t0104100-01
Chr05	irgsp1_rep	CDS	224122	224190	.	+	1	Parent=Os05t0104100-01
Chr05	irgsp1_rep	CDS	224373	224484	.	+	1	Parent=Os05t0104100-01
Chr05	irgsp1_rep	CDS	225027	225116	.	+	0	Parent=Os05t0104100-01
Chr05	irgsp1_rep	CDS	225300	225470	.	+	0	Parent=Os05t0104100-01
Chr05	irgsp1_rep	CDS	225794	225886	.	+	0	Parent=Os05t0104100-01
Chr05	irgsp1_rep	three_prime_UTR	225887	226298	.	+	.	Parent=Os05t0104100-01
Chr05	irgsp1_rep	mRNA	219063	226280	.	+	.	ID=Os05t0104100-02;Name=Os05t0104100-02;Locus_id=Os05g0104100;Oryzabase Gene Symbol Synonym(s)=OsFH14%2C FH14;Oryzabase Gene Name Synonym(s)=formin homology 14%2C forming family protein 14%2C FH2 protein 14%2C FH2 domain protein 14;Note=Vps53-like%2C N-terminal domain containing protein.;Transcript_evidence=AK103271 (DDBJ%2C Best hit);ORF_evidence=B8AWK1 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Molecular Function: small GTPase regulator activity (GO:0005083);InterPro=Clathrin%2C heavy chain/VPS%2C 7-fold repeat (IPR000547),Citron-like (IPR001180),Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1 (IPR019452),Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2 (IPR019453);NIAS_FLcDNA=J033124H21;Oryzabase=21784;Expression=AK103271;TENOR=Os05t0104100-02;KEGG=Os05t0104100-02
Chr05	irgsp1_rep	five_prime_UTR	219063	219113	.	+	.	Parent=Os05t0104100-02
Chr05	irgsp1_rep	CDS	219114	220052	.	+	0	Parent=Os05t0104100-02
Chr05	irgsp1_rep	CDS	220316	220591	.	+	0	Parent=Os05t0104100-02
Chr05	irgsp1_rep	CDS	221323	221519	.	+	0	Parent=Os05t0104100-02
Chr05	irgsp1_rep	CDS	221608	221749	.	+	1	Parent=Os05t0104100-02
Chr05	irgsp1_rep	CDS	221929	222207	.	+	0	Parent=Os05t0104100-02
Chr05	irgsp1_rep	CDS	222286	222358	.	+	0	Parent=Os05t0104100-02
Chr05	irgsp1_rep	CDS	222676	222724	.	+	2	Parent=Os05t0104100-02
Chr05	irgsp1_rep	CDS	223514	223778	.	+	1	Parent=Os05t0104100-02
Chr05	irgsp1_rep	CDS	223921	223976	.	+	0	Parent=Os05t0104100-02
Chr05	irgsp1_rep	CDS	224122	224190	.	+	1	Parent=Os05t0104100-02
Chr05	irgsp1_rep	CDS	224373	224484	.	+	1	Parent=Os05t0104100-02
Chr05	irgsp1_rep	CDS	225027	225116	.	+	0	Parent=Os05t0104100-02
Chr05	irgsp1_rep	CDS	225300	225470	.	+	0	Parent=Os05t0104100-02
Chr05	irgsp1_rep	CDS	225794	225886	.	+	0	Parent=Os05t0104100-02
Chr05	irgsp1_rep	three_prime_UTR	225887	226280	.	+	.	Parent=Os05t0104100-02
Chr05	irgsp1_rep	mRNA	227008	228036	.	+	.	ID=Os05t0104150-01;Name=Os05t0104150-01;Locus_id=Os05g0104150;RAP-DB Gene Symbol Synonym(s)=PGIP2%2C Ospgip2%2C pgip2%2C OsPGIP2;RAP-DB Gene Name Synonym(s)=POLYGALACTURONASE-INHIBITING PROTEIN 2%2C Polygalacturonase-inhibiting protein 2%2C polygalacturonase inhibiting protein 2;CGSNL Gene Symbol=PGIP2;CGSNL Gene Name=POLYGALACTURONASE-INHIBITING PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=Ospgip2%2C pgip2%2C OsPGIP2;Oryzabase Gene Name Synonym(s)=Polygalacturonase-inhibiting protein 2%2C polygalacturonase inhibiting protein 2;Note=Leucine-rich repeat (LRR) protein%2C Inhibitor of fungal polygalacturonase%2C Defence response;Transcript_evidence=AM180653 (Roma);ORF_evidence=A0AAQ1;GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat domain%2C L domain-like (IPR032675),Leucine-rich repeat-containing N-terminal%2C plant-type (IPR013210),Leucine-rich repeat (IPR001611);Manual Curation=April 15%2C 2016;Literature_PMID=22362377,16906405;Oryzabase=7205
Chr05	irgsp1_rep	CDS	227008	228036	.	+	0	Parent=Os05t0104150-01
Chr05	irgsp1_rep	mRNA	230784	231999	.	+	.	ID=Os05t0104200-01;Name=Os05t0104200-01;Locus_id=Os05g0104200;RAP-DB Gene Symbol Synonym(s)=PGIP1%2C Ospgip1%2C pgip1%2C OsPGIP1;RAP-DB Gene Name Synonym(s)=POLYGALACTURONASE-INHIBITING PROTEIN 1%2C Polygalacturonase-inhibiting protein 1%2C polygalacturonase inhibiting protein 1;CGSNL Gene Symbol=PGIP1;CGSNL Gene Name=POLYGALACTURONASE-INHIBITING PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=Ospgip1%2C pgip1%2C OsPGIP1;Oryzabase Gene Name Synonym(s)=Polygalacturonase-inhibiting protein 1%2C polygalacturonase inhibiting protein 1;Note=Polygalacturonase inhibiting protein%2C Inhibitor of fungal polygalacturonase%2C Sheath blight resistance;Transcript_evidence=AM180652;ORF_evidence=A0AAQ0;GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Leucine-rich repeat (IPR001611);Manual Curation=December 17%2C 2014;Literature_PMID=25488398,16906405;Oryzabase=7204;TENOR=Os05t0104200-00
Chr05	irgsp1_rep	five_prime_UTR	230784	230846	.	+	.	Parent=Os05t0104200-01
Chr05	irgsp1_rep	CDS	230847	231776	.	+	0	Parent=Os05t0104200-01
Chr05	irgsp1_rep	three_prime_UTR	231777	231999	.	+	.	Parent=Os05t0104200-01
Chr05	irgsp1_rep	mRNA	248400	249419	.	+	.	ID=Os05t0104600-01;Name=Os05t0104600-01;Locus_id=Os05g0104600;RAP-DB Gene Symbol Synonym(s)=PGIP3%2C Ospgip3%2C pgip3%2C OsPGIP3;RAP-DB Gene Name Synonym(s)=POLYGALACTURONASE-INHIBITING PROTEIN 3%2C Polygalacturonase-inhibiting protein 3%2C polygalacturonase inhibiting protein 3;CGSNL Gene Symbol=PGIP3;CGSNL Gene Name=POLYGALACTURONASE-INHIBITING PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=Ospgip3%2C pgip3%2C OsPGIP3;Oryzabase Gene Name Synonym(s)=Polygalacturonase-inhibiting protein 3%2C polygalacturonase inhibiting protein 3;Note=Leucine-rich repeat (LRR) protein%2C Inhibitor of fungal polygalacturonase%2C Defence response;Transcript_evidence=AM180654 (Roma);ORF_evidence=A0AAQ2,Q75M20;InterPro=Leucine-rich repeat domain%2C L domain-like (IPR032675),Leucine-rich repeat-containing N-terminal%2C plant-type (IPR013210);Manual Curation=April 15%2C 2016;Literature_PMID=22362377,16906405;Oryzabase=7206;TENOR=Os05t0104600-00
Chr05	irgsp1_rep	CDS	248400	249419	.	+	0	Parent=Os05t0104600-01
Chr05	irgsp1_rep	mRNA	251470	255800	.	+	.	ID=Os05t0104650-00;Name=Os05t0104650-00;Locus_id=Os05g0104650;Note=Similar to Formylglycinamide ribonucleotide amidotransferase (Fragment).;Transcript_evidence=ab initio prediction;ORF_evidence=Q8VYU2 (UniProt);GO=Biological Process: 'de novo' IMP biosynthetic process (GO:0006189),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphoribosylformylglycinamidine synthase activity (GO:0004642);InterPro=AIR synthase-related protein (IPR000728),Phosphoribosylformylglycinamidine synthase (IPR010073),AIR synthase-related protein%2C C-terminal (IPR010918),PurM%2C N-terminal-like (IPR016188),Glutamine amidotransferase type 1 (IPR017926);TENOR=Os05t0104650-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	251470	251535	.	+	0	Parent=Os05t0104650-00
Chr05	irgsp1_rep	CDS	251619	255800	.	+	0	Parent=Os05t0104650-00
Chr05	irgsp1_rep	mRNA	256779	258418	.	+	.	ID=Os05t0104700-01;Name=Os05t0104700-01;Locus_id=Os05g0104700;RAP-DB Gene Symbol Synonym(s)=PGIP4%2C Ospgip4%2C pgip4%2C OsPGIP4;RAP-DB Gene Name Synonym(s)=POLYGALACTURONASE-INHIBITING PROTEIN 4%2C Polygalacturonase-inhibiting protein 4%2C polygalacturonase inhibiting protein 4;CGSNL Gene Symbol=PGIP4;CGSNL Gene Name=POLYGALACTURONASE-INHIBITING PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=Ospgip4%2C pgip4%2C OsPGIP4;Oryzabase Gene Name Synonym(s)=Polygalacturonase-inhibiting protein 4%2C polygalacturonase inhibiting protein 4;Note=Leucine-rich repeat (LRR) protein%2C Inhibitor of fungal polygalacturonase%2C Defence response;Transcript_evidence=AM180655 (Roma),AK108676;ORF_evidence=A0AAQ3,Q65XJ2;GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat domain%2C L domain-like (IPR032675),Leucine-rich repeat-containing N-terminal%2C plant-type (IPR013210),Leucine-rich repeat (IPR001611);NIAS_FLcDNA=002-149-A03;Manual Curation=April 18%2C 2016;Literature_PMID=22362377,16906405;Oryzabase=7207;Expression=AK108676;TENOR=Os05t0104700-01;KEGG=Os05t0104700-01
Chr05	irgsp1_rep	five_prime_UTR	256779	257057	.	+	.	Parent=Os05t0104700-01
Chr05	irgsp1_rep	CDS	257058	258263	.	+	0	Parent=Os05t0104700-01
Chr05	irgsp1_rep	three_prime_UTR	258264	258418	.	+	.	Parent=Os05t0104700-01
Chr05	irgsp1_rep	mRNA	258770	259018	.	+	.	ID=Os05t0104750-00;Name=Os05t0104750-00;Locus_id=Os05g0104750;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FM06 (UniProt);TENOR=Os05t0104750-00
Chr05	irgsp1_rep	CDS	258770	259018	.	+	0	Parent=Os05t0104750-00
Chr05	irgsp1_rep	mRNA	260126	262272	.	-	.	ID=Os05t0104800-01;Name=Os05t0104800-01;Locus_id=Os05g0104800;RAP-DB Gene Symbol Synonym(s)=EIF3F%2C eIF-3f%2C OseIF3f;RAP-DB Gene Name Synonym(s)=EUKARYOTIC INITIATION FACTOR 3F%2C eukaryotic translation initiation factor 3%2C subunit f;CGSNL Gene Symbol=EIF3F;CGSNL Gene Name=EUKARYOTIC INITIATION FACTOR 3F;Oryzabase Gene Symbol Synonym(s)=eIF-3f%2C OseIF3f;Oryzabase Gene Name Synonym(s)="eukaryotic translation initiation factor 3%2C subunit f"%2C Eukaryotic translation initiation factor 3 subunit f;Note=Eukaryotic translation initiation factor 3 subunit f%2C Microgametogenesis;Transcript_evidence=AK104207,AK070215,AK104554;ORF_evidence=Q75M19;GO=Molecular Function: translation initiation factor activity (GO:0003743),Molecular Function: protein binding (GO:0005515),Cellular Component: cytoplasm (GO:0005737),Cellular Component: eukaryotic translation initiation factor 3 complex (GO:0005852);InterPro=Eukaryotic translation initiation factor 3 subunit F (IPR027531),JAB1/MPN/MOV34 metalloenzyme domain (IPR000555),Rpn11/EIF3F%2C C-terminal (IPR024969);NIAS_FLcDNA=006-305-A12, J023043K07, 006-305-F08;Manual Curation=May 24%2C 2016;Literature_PMID=27200010;Oryzabase=21021;TENOR=Os05t0104800-01
Chr05	irgsp1_rep	five_prime_UTR	262205	262272	.	-	.	Parent=Os05t0104800-01
Chr05	irgsp1_rep	CDS	261986	262204	.	-	0	Parent=Os05t0104800-01
Chr05	irgsp1_rep	CDS	261803	261882	.	-	0	Parent=Os05t0104800-01
Chr05	irgsp1_rep	CDS	261172	261401	.	-	1	Parent=Os05t0104800-01
Chr05	irgsp1_rep	CDS	260654	260775	.	-	2	Parent=Os05t0104800-01
Chr05	irgsp1_rep	CDS	260462	260575	.	-	0	Parent=Os05t0104800-01
Chr05	irgsp1_rep	CDS	260284	260373	.	-	0	Parent=Os05t0104800-01
Chr05	irgsp1_rep	three_prime_UTR	260126	260283	.	-	.	Parent=Os05t0104800-01
Chr05	irgsp1_rep	mRNA	263744	266323	.	-	.	ID=Os05t0104900-01;Name=Os05t0104900-01;Locus_id=Os05g0104900;Oryzabase Gene Symbol Synonym(s)=OsPUB66;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 66%2C U-box protein 66;Note=Similar to STIP1 homology and U box-containing protein 1.;Transcript_evidence=AK069824 (DDBJ%2C Best hit);ORF_evidence=NP_001149248.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J023026A06;Oryzabase=17857;TENOR=Os05t0104900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	266266	266323	.	-	.	Parent=Os05t0104900-01
Chr05	irgsp1_rep	CDS	266147	266265	.	-	0	Parent=Os05t0104900-01
Chr05	irgsp1_rep	CDS	265977	266042	.	-	1	Parent=Os05t0104900-01
Chr05	irgsp1_rep	CDS	265686	265893	.	-	1	Parent=Os05t0104900-01
Chr05	irgsp1_rep	CDS	265072	265227	.	-	0	Parent=Os05t0104900-01
Chr05	irgsp1_rep	three_prime_UTR	264557	265071	.	-	.	Parent=Os05t0104900-01
Chr05	irgsp1_rep	three_prime_UTR	263744	264126	.	-	.	Parent=Os05t0104900-01
Chr05	irgsp1_rep	mRNA	267986	274638	.	-	.	ID=Os05t0105000-01;Name=Os05t0105000-01;Locus_id=Os05g0105000;CGSNL Gene Symbol=MMT;CGSNL Gene Name=METHIONINE METHYLTRANSFERASE;Oryzabase Gene Symbol Synonym(s)=OsaMMT%2C OsMMT;Oryzabase Gene Name Synonym(s)=methionine methyltransferase;Note=Similar to Methionine S-methyltransferase (EC 2.1.1.12) (AdoMet:Met S- methyltransferase) (Hv-MMT1).;Transcript_evidence=AK121285 (DDBJ%2C Best hit);ORF_evidence=Q9MBC2 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferase%2C class I/classII (IPR004839),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J023108O11;Oryzabase=22908;Expression=AK121285;TENOR=Os05t0105000-01;KEGG=Os05t0105000-01 (EC:2.1.1.12)
Chr05	irgsp1_rep	five_prime_UTR	274562	274638	.	-	.	Parent=Os05t0105000-01
Chr05	irgsp1_rep	CDS	274324	274561	.	-	0	Parent=Os05t0105000-01
Chr05	irgsp1_rep	CDS	273045	273238	.	-	2	Parent=Os05t0105000-01
Chr05	irgsp1_rep	CDS	272462	272668	.	-	0	Parent=Os05t0105000-01
Chr05	irgsp1_rep	CDS	272274	272369	.	-	0	Parent=Os05t0105000-01
Chr05	irgsp1_rep	CDS	271866	272054	.	-	0	Parent=Os05t0105000-01
Chr05	irgsp1_rep	CDS	271465	271653	.	-	0	Parent=Os05t0105000-01
Chr05	irgsp1_rep	CDS	271155	271391	.	-	0	Parent=Os05t0105000-01
Chr05	irgsp1_rep	CDS	270938	271072	.	-	0	Parent=Os05t0105000-01
Chr05	irgsp1_rep	CDS	270386	270691	.	-	0	Parent=Os05t0105000-01
Chr05	irgsp1_rep	CDS	270097	270276	.	-	0	Parent=Os05t0105000-01
Chr05	irgsp1_rep	CDS	268840	269805	.	-	0	Parent=Os05t0105000-01
Chr05	irgsp1_rep	CDS	268194	268511	.	-	0	Parent=Os05t0105000-01
Chr05	irgsp1_rep	three_prime_UTR	267986	268193	.	-	.	Parent=Os05t0105000-01
Chr05	irgsp1_rep	mRNA	276939	278024	.	-	.	ID=Os05t0105050-00;Name=Os05t0105050-00;Locus_id=Os05g0105050;Note=Hypothetical conserved gene.;Transcript_evidence=CT836460 (DDBJ%2C Best hit);ORF_evidence=B9FM09 (UniProt);TENOR=Os05t0105050-00;KEGG=Os05t0105050-00
Chr05	irgsp1_rep	five_prime_UTR	278005	278024	.	-	.	Parent=Os05t0105050-00
Chr05	irgsp1_rep	CDS	277749	278004	.	-	0	Parent=Os05t0105050-00
Chr05	irgsp1_rep	CDS	277279	277328	.	-	2	Parent=Os05t0105050-00
Chr05	irgsp1_rep	three_prime_UTR	277179	277278	.	-	.	Parent=Os05t0105050-00
Chr05	irgsp1_rep	three_prime_UTR	276939	277167	.	-	.	Parent=Os05t0105050-00
Chr05	irgsp1_rep	mRNA	284991	287174	.	+	.	ID=Os05t0105100-01;Name=Os05t0105100-01;Locus_id=Os05g0105100;Oryzabase Gene Symbol Synonym(s)=OsRab11A2;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab11A2;Note=Similar to Small GTPase rab11-related.;Transcript_evidence=AK102713 (DDBJ%2C Best hit);ORF_evidence=NP_001151078.1 (RefSeq);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: intracellular protein transport (GO:0006886),Biological Process: nucleocytoplasmic transport (GO:0006913),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Cellular Component: membrane (GO:0016020),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Ran GTPase (IPR002041),Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C Ras type (IPR020849);NIAS_FLcDNA=J033104P17;Oryzabase=11097;Expression=AK102713;TENOR=Os05t0105100-01;KEGG=Os05t0105100-01
Chr05	irgsp1_rep	five_prime_UTR	284991	285078	.	+	.	Parent=Os05t0105100-01
Chr05	irgsp1_rep	CDS	285079	285249	.	+	0	Parent=Os05t0105100-01
Chr05	irgsp1_rep	CDS	286561	287052	.	+	0	Parent=Os05t0105100-01
Chr05	irgsp1_rep	three_prime_UTR	287053	287174	.	+	.	Parent=Os05t0105100-01
Chr05	irgsp1_rep	mRNA	285059	287051	.	-	.	ID=Os05t0105150-00;Name=Os05t0105150-00;Locus_id=Os05g0105150;Note=Non-protein coding transcript.;Transcript_evidence=BT084300 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0105150-00
Chr05	irgsp1_rep	exon	286552	287051	.	-	.	Parent=Os05t0105150-00
Chr05	irgsp1_rep	exon	285059	285243	.	-	.	Parent=Os05t0105150-00
Chr05	irgsp1_rep	mRNA	287362	288834	.	-	.	ID=Os05t0105200-01;Name=Os05t0105200-01;Locus_id=Os05g0105200;Note=Similar to Ras-related protein Rab-1B.;Transcript_evidence=AK062492 (DDBJ%2C Best hit);ORF_evidence=F2VXU6 (UniProt);GO=Biological Process: small GTPase mediated signal transduction (GO:0007264),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806);NIAS_FLcDNA=001-103-H08;Expression=AK062492;TENOR=Os05t0105200-01;KEGG=Os05t0105200-01
Chr05	irgsp1_rep	five_prime_UTR	288833	288834	.	-	.	Parent=Os05t0105200-01
Chr05	irgsp1_rep	CDS	288692	288832	.	-	0	Parent=Os05t0105200-01
Chr05	irgsp1_rep	CDS	288240	288343	.	-	0	Parent=Os05t0105200-01
Chr05	irgsp1_rep	CDS	287609	287714	.	-	1	Parent=Os05t0105200-01
Chr05	irgsp1_rep	three_prime_UTR	287362	287608	.	-	.	Parent=Os05t0105200-01
Chr05	irgsp1_rep	mRNA	291392	297119	.	+	.	ID=Os05t0105300-01;Name=Os05t0105300-01;Locus_id=Os05g0105300;Note=CAP-Gly domain containing protein.;Transcript_evidence=AK069395 (DDBJ%2C Best hit);ORF_evidence=B9FM12 (UniProt);InterPro=Cytoskeleton-associated protein%2C Gly-rich domain (IPR000938);NIAS_FLcDNA=J023011N07;Expression=AK069395;TENOR=Os05t0105300-01;KEGG=Os05t0105300-01
Chr05	irgsp1_rep	five_prime_UTR	291392	291424	.	+	.	Parent=Os05t0105300-01
Chr05	irgsp1_rep	CDS	291425	291725	.	+	0	Parent=Os05t0105300-01
Chr05	irgsp1_rep	CDS	292197	292367	.	+	2	Parent=Os05t0105300-01
Chr05	irgsp1_rep	CDS	293109	293176	.	+	2	Parent=Os05t0105300-01
Chr05	irgsp1_rep	three_prime_UTR	293177	293183	.	+	.	Parent=Os05t0105300-01
Chr05	irgsp1_rep	three_prime_UTR	293611	293757	.	+	.	Parent=Os05t0105300-01
Chr05	irgsp1_rep	three_prime_UTR	293840	293914	.	+	.	Parent=Os05t0105300-01
Chr05	irgsp1_rep	three_prime_UTR	294713	294774	.	+	.	Parent=Os05t0105300-01
Chr05	irgsp1_rep	three_prime_UTR	294986	295093	.	+	.	Parent=Os05t0105300-01
Chr05	irgsp1_rep	three_prime_UTR	295172	295206	.	+	.	Parent=Os05t0105300-01
Chr05	irgsp1_rep	three_prime_UTR	295428	295501	.	+	.	Parent=Os05t0105300-01
Chr05	irgsp1_rep	three_prime_UTR	295883	295974	.	+	.	Parent=Os05t0105300-01
Chr05	irgsp1_rep	three_prime_UTR	296063	296139	.	+	.	Parent=Os05t0105300-01
Chr05	irgsp1_rep	three_prime_UTR	296547	296624	.	+	.	Parent=Os05t0105300-01
Chr05	irgsp1_rep	three_prime_UTR	296779	297119	.	+	.	Parent=Os05t0105300-01
Chr05	irgsp1_rep	mRNA	297542	298520	.	-	.	ID=Os05t0105401-01;Name=Os05t0105401-01;Locus_id=Os05g0105401;Note=Hypothetical conserved gene.;Transcript_evidence=AK241515 (DDBJ%2C Best hit);ORF_evidence=B8AWV9 (UniProt);NIAS_FLcDNA=J065169A03;TENOR=Os05t0105401-01;KEGG=Os05t0105401-01
Chr05	irgsp1_rep	five_prime_UTR	298358	298520	.	-	.	Parent=Os05t0105401-01
Chr05	irgsp1_rep	CDS	298160	298357	.	-	0	Parent=Os05t0105401-01
Chr05	irgsp1_rep	three_prime_UTR	297542	298159	.	-	.	Parent=Os05t0105401-01
Chr05	irgsp1_rep	mRNA	299419	303731	.	+	.	ID=Os05t0105500-01;Name=Os05t0105500-01;Locus_id=Os05g0105500;Note=Similar to predicted protein.;Transcript_evidence=AK242031 (DDBJ%2C Best hit);ORF_evidence=B6TYL5 (UniProt);InterPro=Domain of unknown function DUF2062 (IPR018639);NIAS_FLcDNA=J075115L08;TENOR=Os05t0105500-01;KEGG=Os05t0105500-01
Chr05	irgsp1_rep	five_prime_UTR	299419	299662	.	+	.	Parent=Os05t0105500-01
Chr05	irgsp1_rep	five_prime_UTR	301408	301489	.	+	.	Parent=Os05t0105500-01
Chr05	irgsp1_rep	CDS	301490	301569	.	+	0	Parent=Os05t0105500-01
Chr05	irgsp1_rep	CDS	301692	301762	.	+	1	Parent=Os05t0105500-01
Chr05	irgsp1_rep	CDS	302420	302525	.	+	2	Parent=Os05t0105500-01
Chr05	irgsp1_rep	CDS	303182	303314	.	+	1	Parent=Os05t0105500-01
Chr05	irgsp1_rep	CDS	303420	303554	.	+	0	Parent=Os05t0105500-01
Chr05	irgsp1_rep	three_prime_UTR	303555	303731	.	+	.	Parent=Os05t0105500-01
Chr05	irgsp1_rep	mRNA	301690	303708	.	-	.	ID=Os05t0105550-00;Name=Os05t0105550-00;Locus_id=Os05g0105550;Note=Non-protein coding transcript.;Transcript_evidence=BT019298 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0105550-00
Chr05	irgsp1_rep	exon	303402	303708	.	-	.	Parent=Os05t0105550-00
Chr05	irgsp1_rep	exon	303164	303296	.	-	.	Parent=Os05t0105550-00
Chr05	irgsp1_rep	exon	301690	301740	.	-	.	Parent=Os05t0105550-00
Chr05	irgsp1_rep	mRNA	304132	311102	.	-	.	ID=Os05t0105600-01;Name=Os05t0105600-01;Locus_id=Os05g0105600;Note=YT521-B-like protein family protein.;Transcript_evidence=AK069692 (DDBJ%2C Best hit);ORF_evidence=B8AWW1 (UniProt);InterPro=YTH domain (IPR007275);NIAS_FLcDNA=J023026D10;Expression=AK069692;TENOR=Os05t0105600-01;KEGG=Os05t0105600-01
Chr05	irgsp1_rep	five_prime_UTR	310934	311102	.	-	.	Parent=Os05t0105600-01
Chr05	irgsp1_rep	CDS	309459	309597	.	-	0	Parent=Os05t0105600-01
Chr05	irgsp1_rep	CDS	309243	309361	.	-	2	Parent=Os05t0105600-01
Chr05	irgsp1_rep	CDS	307776	308168	.	-	0	Parent=Os05t0105600-01
Chr05	irgsp1_rep	CDS	306824	307639	.	-	0	Parent=Os05t0105600-01
Chr05	irgsp1_rep	CDS	305810	306022	.	-	0	Parent=Os05t0105600-01
Chr05	irgsp1_rep	CDS	305265	305447	.	-	0	Parent=Os05t0105600-01
Chr05	irgsp1_rep	CDS	304511	304564	.	-	0	Parent=Os05t0105600-01
Chr05	irgsp1_rep	three_prime_UTR	304132	304510	.	-	.	Parent=Os05t0105600-01
Chr05	irgsp1_rep	mRNA	313165	313673	.	+	.	ID=Os05t0105800-01;Name=Os05t0105800-01;Locus_id=Os05g0105800;Note=Conserved hypothetical protein.;Transcript_evidence=AK058224 (DDBJ%2C Best hit);ORF_evidence=B8AWW2 (UniProt);NIAS_FLcDNA=001-010-G11;TENOR=Os05t0105800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	313165	313166	.	+	.	Parent=Os05t0105800-01
Chr05	irgsp1_rep	CDS	313167	313213	.	+	0	Parent=Os05t0105800-01
Chr05	irgsp1_rep	CDS	313358	313445	.	+	1	Parent=Os05t0105800-01
Chr05	irgsp1_rep	three_prime_UTR	313446	313673	.	+	.	Parent=Os05t0105800-01
Chr05	irgsp1_rep	mRNA	317219	320666	.	+	.	ID=Os05t0105900-01;Name=Os05t0105900-01;Locus_id=Os05g0105900;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK063761 (DDBJ%2C Best hit);ORF_evidence=NP_973844.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-121-A12;Expression=AK063761;TENOR=Os05t0105900-01;KEGG=Os05t0105900-01
Chr05	irgsp1_rep	five_prime_UTR	317219	317274	.	+	.	Parent=Os05t0105900-01
Chr05	irgsp1_rep	CDS	317275	317444	.	+	0	Parent=Os05t0105900-01
Chr05	irgsp1_rep	CDS	317538	317626	.	+	1	Parent=Os05t0105900-01
Chr05	irgsp1_rep	CDS	318010	318056	.	+	2	Parent=Os05t0105900-01
Chr05	irgsp1_rep	CDS	318150	318230	.	+	0	Parent=Os05t0105900-01
Chr05	irgsp1_rep	CDS	318356	318524	.	+	0	Parent=Os05t0105900-01
Chr05	irgsp1_rep	CDS	318726	318945	.	+	2	Parent=Os05t0105900-01
Chr05	irgsp1_rep	CDS	319024	319089	.	+	1	Parent=Os05t0105900-01
Chr05	irgsp1_rep	CDS	319539	319655	.	+	1	Parent=Os05t0105900-01
Chr05	irgsp1_rep	CDS	319750	319822	.	+	1	Parent=Os05t0105900-01
Chr05	irgsp1_rep	CDS	319936	319973	.	+	0	Parent=Os05t0105900-01
Chr05	irgsp1_rep	CDS	320077	320149	.	+	1	Parent=Os05t0105900-01
Chr05	irgsp1_rep	three_prime_UTR	320150	320666	.	+	.	Parent=Os05t0105900-01
Chr05	irgsp1_rep	mRNA	321176	324412	.	-	.	ID=Os05t0106000-01;Name=Os05t0106000-01;Locus_id=Os05g0106000;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK103444 (DDBJ%2C Best hit);ORF_evidence=A2XZG9 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J033129E14;Expression=AK103444;TENOR=Os05t0106000-01;KEGG=Os05t0106000-01
Chr05	irgsp1_rep	five_prime_UTR	324288	324412	.	-	.	Parent=Os05t0106000-01
Chr05	irgsp1_rep	CDS	324172	324287	.	-	0	Parent=Os05t0106000-01
Chr05	irgsp1_rep	CDS	324030	324088	.	-	1	Parent=Os05t0106000-01
Chr05	irgsp1_rep	CDS	323709	323908	.	-	2	Parent=Os05t0106000-01
Chr05	irgsp1_rep	CDS	323020	323109	.	-	0	Parent=Os05t0106000-01
Chr05	irgsp1_rep	CDS	322438	322578	.	-	0	Parent=Os05t0106000-01
Chr05	irgsp1_rep	CDS	321422	322021	.	-	0	Parent=Os05t0106000-01
Chr05	irgsp1_rep	three_prime_UTR	321176	321421	.	-	.	Parent=Os05t0106000-01
Chr05	irgsp1_rep	mRNA	321161	321842	.	-	.	ID=Os05t0106000-02;Name=Os05t0106000-02;Locus_id=Os05g0106000;Note=Hypothetical conserved gene.;Transcript_evidence=AK060463 (DDBJ%2C Best hit);ORF_evidence=A2XZG9 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087);NIAS_FLcDNA=001-012-C07;Expression=AK060463;TENOR=Os05t0106000-02;KEGG=Os05t0106000-02
Chr05	irgsp1_rep	five_prime_UTR	321842	321842	.	-	.	Parent=Os05t0106000-02
Chr05	irgsp1_rep	CDS	321422	321841	.	-	0	Parent=Os05t0106000-02
Chr05	irgsp1_rep	three_prime_UTR	321161	321421	.	-	.	Parent=Os05t0106000-02
Chr05	irgsp1_rep	mRNA	326134	328142	.	-	.	ID=Os05t0106100-01;Name=Os05t0106100-01;Locus_id=Os05g0106100;Note=Similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (EC 3.6.3.14) (V- ATPase 16 kDa proteolipid subunit) (Fragment).;Transcript_evidence=AK063178 (DDBJ%2C Best hit);ORF_evidence=Q94G11 (UniProt);GO=Biological Process: ATP hydrolysis coupled proton transport (GO:0015991),Cellular Component: proton-transporting two-sector ATPase complex%2C proton-transporting domain (GO:0033177),Cellular Component: proton-transporting V-type ATPase%2C V0 domain (GO:0033179),Molecular Function: hydrogen ion transmembrane transporter activity (GO:0015078);InterPro=ATPase%2C V0 complex%2C proteolipid subunit C (IPR000245),ATPase%2C F0/V0 complex%2C subunit C (IPR002379),ATPase%2C V0 complex%2C proteolipid subunit C%2C eukaryotic (IPR011555);NIAS_FLcDNA=001-112-A08;Expression=AK063178;TENOR=Os05t0106100-01;KEGG=Os05t0106100-01 (EC:3.6.3.14)
Chr05	irgsp1_rep	five_prime_UTR	328043	328142	.	-	.	Parent=Os05t0106100-01
Chr05	irgsp1_rep	CDS	327961	328042	.	-	0	Parent=Os05t0106100-01
Chr05	irgsp1_rep	CDS	327597	327882	.	-	2	Parent=Os05t0106100-01
Chr05	irgsp1_rep	CDS	326386	326518	.	-	1	Parent=Os05t0106100-01
Chr05	irgsp1_rep	three_prime_UTR	326134	326385	.	-	.	Parent=Os05t0106100-01
Chr05	irgsp1_rep	mRNA	338917	340779	.	+	.	ID=Os05t0106200-01;Name=Os05t0106200-01;Locus_id=Os05g0106200;CGSNL Gene Symbol=UMAMIT8;CGSNL Gene Name=USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 8;Oryzabase Gene Symbol Synonym(s)=OsUMAMIT8;Oryzabase Gene Name Synonym(s)=Usually Multiple Acids Move In and out Transporter 8;Note=Protein of unknown function DUF6%2C transmembrane domain containing protein.;Transcript_evidence=AK107666 (DDBJ%2C Best hit);ORF_evidence=NP_001149874.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=002-131-H03;Oryzabase=21373;Expression=AK107666;TENOR=Os05t0106200-01;KEGG=Os05t0106200-01
Chr05	irgsp1_rep	five_prime_UTR	338917	339055	.	+	.	Parent=Os05t0106200-01
Chr05	irgsp1_rep	CDS	339056	339228	.	+	0	Parent=Os05t0106200-01
Chr05	irgsp1_rep	CDS	339346	339408	.	+	1	Parent=Os05t0106200-01
Chr05	irgsp1_rep	CDS	339545	339661	.	+	1	Parent=Os05t0106200-01
Chr05	irgsp1_rep	CDS	339903	340704	.	+	1	Parent=Os05t0106200-01
Chr05	irgsp1_rep	three_prime_UTR	340705	340779	.	+	.	Parent=Os05t0106200-01
Chr05	irgsp1_rep	mRNA	346313	348856	.	+	.	ID=Os05t0106300-00;Name=Os05t0106300-00;Locus_id=Os05g0106300;Note=Similar to Integral membrane protein DUF6 containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2RAV3 (UniProt);TENOR=Os05t0106300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	346313	346516	.	+	0	Parent=Os05t0106300-00
Chr05	irgsp1_rep	CDS	346957	347061	.	+	0	Parent=Os05t0106300-00
Chr05	irgsp1_rep	CDS	347163	347420	.	+	0	Parent=Os05t0106300-00
Chr05	irgsp1_rep	CDS	348734	348856	.	+	0	Parent=Os05t0106300-00
Chr05	irgsp1_rep	mRNA	351640	354039	.	+	.	ID=Os05t0106500-01;Name=Os05t0106500-01;Locus_id=Os05g0106500;Oryzabase Gene Symbol Synonym(s)=OsDjC47;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C47%2C rice DJC72 homolog;Note=Similar to Chaperone protein dnaJ.;Transcript_evidence=AK103530 (DDBJ%2C Best hit);ORF_evidence=B6U3I3 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095);NIAS_FLcDNA=J033131N14;Oryzabase=12204;Expression=AK103530;TENOR=Os05t0106500-01;KEGG=Os05t0106500-01
Chr05	irgsp1_rep	five_prime_UTR	351640	351642	.	+	.	Parent=Os05t0106500-01
Chr05	irgsp1_rep	CDS	351643	351726	.	+	0	Parent=Os05t0106500-01
Chr05	irgsp1_rep	CDS	352216	352302	.	+	0	Parent=Os05t0106500-01
Chr05	irgsp1_rep	CDS	352627	352723	.	+	0	Parent=Os05t0106500-01
Chr05	irgsp1_rep	CDS	352877	353168	.	+	2	Parent=Os05t0106500-01
Chr05	irgsp1_rep	CDS	353281	353335	.	+	1	Parent=Os05t0106500-01
Chr05	irgsp1_rep	CDS	353658	353735	.	+	0	Parent=Os05t0106500-01
Chr05	irgsp1_rep	three_prime_UTR	353736	354039	.	+	.	Parent=Os05t0106500-01
Chr05	irgsp1_rep	mRNA	354148	356618	.	-	.	ID=Os05t0106600-01;Name=Os05t0106600-01;Locus_id=Os05g0106600;Note=Similar to Actin 97.;Transcript_evidence=AK103340 (DDBJ%2C Best hit),AK072796 (DDBJ%2C Best hit);ORF_evidence=Q8H1L9 (UniProt);NIAS_FLcDNA=J033126A19,J023136L02;TENOR=Os05t0106600-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	356487	356618	.	-	.	Parent=Os05t0106600-01
Chr05	irgsp1_rep	five_prime_UTR	356123	356125	.	-	.	Parent=Os05t0106600-01
Chr05	irgsp1_rep	CDS	356063	356122	.	-	0	Parent=Os05t0106600-01
Chr05	irgsp1_rep	CDS	355578	355971	.	-	0	Parent=Os05t0106600-01
Chr05	irgsp1_rep	CDS	354632	355245	.	-	2	Parent=Os05t0106600-01
Chr05	irgsp1_rep	CDS	354442	354507	.	-	0	Parent=Os05t0106600-01
Chr05	irgsp1_rep	three_prime_UTR	354148	354441	.	-	.	Parent=Os05t0106600-01
Chr05	irgsp1_rep	mRNA	354234	356610	.	-	.	ID=Os05t0106600-02;Name=Os05t0106600-02;Locus_id=Os05g0106600;Note=Similar to Actin 97.;Transcript_evidence=AK061651 (DDBJ%2C Best hit);ORF_evidence=Q8H1L9 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Actin-like (IPR004000),Actin%2C conserved site (IPR004001),Actin/actin-like conserved site (IPR020902);NIAS_FLcDNA=001-036-C04;Expression=AK061651;TENOR=Os05t0106600-02;KEGG=Os05t0106600-02
Chr05	irgsp1_rep	five_prime_UTR	356487	356610	.	-	.	Parent=Os05t0106600-02
Chr05	irgsp1_rep	five_prime_UTR	356123	356136	.	-	.	Parent=Os05t0106600-02
Chr05	irgsp1_rep	CDS	356063	356122	.	-	0	Parent=Os05t0106600-02
Chr05	irgsp1_rep	CDS	355578	355971	.	-	0	Parent=Os05t0106600-02
Chr05	irgsp1_rep	CDS	354632	355245	.	-	2	Parent=Os05t0106600-02
Chr05	irgsp1_rep	CDS	354442	354507	.	-	0	Parent=Os05t0106600-02
Chr05	irgsp1_rep	three_prime_UTR	354234	354441	.	-	.	Parent=Os05t0106600-02
Chr05	irgsp1_rep	mRNA	354383	356134	.	+	.	ID=Os05t0106650-00;Name=Os05t0106650-00;Locus_id=Os05g0106650;Note=Hypothetical gene.;Transcript_evidence=BT018641 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0106650-00;KEGG=Os05t0106650-00
Chr05	irgsp1_rep	five_prime_UTR	354383	354489	.	+	.	Parent=Os05t0106650-00
Chr05	irgsp1_rep	five_prime_UTR	354613	355174	.	+	.	Parent=Os05t0106650-00
Chr05	irgsp1_rep	CDS	355175	355247	.	+	0	Parent=Os05t0106650-00
Chr05	irgsp1_rep	CDS	355580	355985	.	+	2	Parent=Os05t0106650-00
Chr05	irgsp1_rep	CDS	356077	356134	.	+	1	Parent=Os05t0106650-00
Chr05	irgsp1_rep	mRNA	362367	365961	.	+	.	ID=Os05t0106700-00;Name=Os05t0106700-00;Locus_id=Os05g0106700;Note=Similar to PRAF1%3B Ran GTPase binding / Chromatin binding / zinc ion binding.;Transcript_evidence=AK359494 (DDBJ);ORF_evidence=NP_565144.1 (RefSeq);GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C FYVE-type (IPR000306),Regulator of Chromosome condensation%2C RCC1 (IPR000408),Regulator of Chromosome condensation/beta-lactamase-inhibitor protein II (IPR009091),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Brevis radix-like domain (IPR013591),Zinc finger%2C FYVE-related (IPR017455);TENOR=Os05t0106700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	362367	362430	.	+	.	Parent=Os05t0106700-00
Chr05	irgsp1_rep	CDS	362431	364422	.	+	0	Parent=Os05t0106700-00
Chr05	irgsp1_rep	CDS	364553	364699	.	+	0	Parent=Os05t0106700-00
Chr05	irgsp1_rep	CDS	364885	365432	.	+	0	Parent=Os05t0106700-00
Chr05	irgsp1_rep	CDS	365826	365961	.	+	1	Parent=Os05t0106700-00
Chr05	irgsp1_rep	mRNA	368284	370934	.	-	.	ID=Os05t0106800-00;Name=Os05t0106800-00;Locus_id=Os05g0106800;Oryzabase Gene Symbol Synonym(s)=OsFbox241%2C Os_F0593;Oryzabase Gene Name Synonym(s)=F-box protein 241;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FM18 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17026;TENOR=Os05t0106800-00
Chr05	irgsp1_rep	CDS	370908	370934	.	-	0	Parent=Os05t0106800-00
Chr05	irgsp1_rep	CDS	369962	370197	.	-	0	Parent=Os05t0106800-00
Chr05	irgsp1_rep	CDS	369269	369896	.	-	1	Parent=Os05t0106800-00
Chr05	irgsp1_rep	CDS	368958	369110	.	-	0	Parent=Os05t0106800-00
Chr05	irgsp1_rep	CDS	368482	368833	.	-	0	Parent=Os05t0106800-00
Chr05	irgsp1_rep	CDS	368284	368303	.	-	2	Parent=Os05t0106800-00
Chr05	irgsp1_rep	mRNA	372788	375683	.	-	.	ID=Os05t0106900-01;Name=Os05t0106900-01;Locus_id=Os05g0106900;Oryzabase Gene Symbol Synonym(s)=OsFbox242%2C Os_F0706;Oryzabase Gene Name Synonym(s)=F-box protein 242;Note=F-box domain%2C Skp2-like domain containing protein.;Transcript_evidence=AK105734 (DDBJ%2C Best hit);ORF_evidence=B8AWW9 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=001-201-H10;Oryzabase=17027;TENOR=Os05t0106900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	375439	375683	.	-	.	Parent=Os05t0106900-01
Chr05	irgsp1_rep	five_prime_UTR	375057	375067	.	-	.	Parent=Os05t0106900-01
Chr05	irgsp1_rep	CDS	375027	375056	.	-	0	Parent=Os05t0106900-01
Chr05	irgsp1_rep	CDS	374265	374897	.	-	0	Parent=Os05t0106900-01
Chr05	irgsp1_rep	three_prime_UTR	373967	374264	.	-	.	Parent=Os05t0106900-01
Chr05	irgsp1_rep	three_prime_UTR	373715	373867	.	-	.	Parent=Os05t0106900-01
Chr05	irgsp1_rep	three_prime_UTR	372788	373576	.	-	.	Parent=Os05t0106900-01
Chr05	irgsp1_rep	mRNA	375945	378250	.	-	.	ID=Os05t0107000-01;Name=Os05t0107000-01;Locus_id=Os05g0107000;Note=Hypothetical conserved gene.;Transcript_evidence=AK241102 (DDBJ%2C Best hit);ORF_evidence=B9FM20 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J065078J20;TENOR=Os05t0107000-01;KEGG=Os05t0107000-01
Chr05	irgsp1_rep	five_prime_UTR	378247	378250	.	-	.	Parent=Os05t0107000-01
Chr05	irgsp1_rep	CDS	377178	378246	.	-	0	Parent=Os05t0107000-01
Chr05	irgsp1_rep	CDS	376470	377062	.	-	2	Parent=Os05t0107000-01
Chr05	irgsp1_rep	three_prime_UTR	375945	376469	.	-	.	Parent=Os05t0107000-01
Chr05	irgsp1_rep	mRNA	409438	410437	.	-	.	ID=Os05t0107101-00;Name=Os05t0107101-00;Locus_id=Os05g0107101;Note=Conserved hypothetical protein.;Transcript_evidence=EU945402 (DDBJ);ORF_evidence=A2ZAG0 (UniProt);TENOR=Os05t0107101-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	410257	410437	.	-	.	Parent=Os05t0107101-00
Chr05	irgsp1_rep	CDS	409438	410256	.	-	0	Parent=Os05t0107101-00
Chr05	irgsp1_rep	mRNA	411095	419522	.	+	.	ID=Os05t0107300-01;Name=Os05t0107300-01;Locus_id=Os05g0107300;Note=Conserved hypothetical protein.;Transcript_evidence=AK121230 (DDBJ%2C Best hit);ORF_evidence=B9FK22 (UniProt);NIAS_FLcDNA=J023092D08;Expression=AK121230;TENOR=Os05t0107300-01;KEGG=Os05t0107300-01
Chr05	irgsp1_rep	five_prime_UTR	411095	411318	.	+	.	Parent=Os05t0107300-01
Chr05	irgsp1_rep	CDS	411319	411560	.	+	0	Parent=Os05t0107300-01
Chr05	irgsp1_rep	CDS	411688	411901	.	+	1	Parent=Os05t0107300-01
Chr05	irgsp1_rep	CDS	412948	413237	.	+	0	Parent=Os05t0107300-01
Chr05	irgsp1_rep	CDS	413729	413905	.	+	1	Parent=Os05t0107300-01
Chr05	irgsp1_rep	CDS	414050	414826	.	+	1	Parent=Os05t0107300-01
Chr05	irgsp1_rep	CDS	414917	414990	.	+	1	Parent=Os05t0107300-01
Chr05	irgsp1_rep	CDS	415102	415164	.	+	2	Parent=Os05t0107300-01
Chr05	irgsp1_rep	CDS	415264	415352	.	+	2	Parent=Os05t0107300-01
Chr05	irgsp1_rep	CDS	415451	415546	.	+	0	Parent=Os05t0107300-01
Chr05	irgsp1_rep	CDS	415664	416323	.	+	0	Parent=Os05t0107300-01
Chr05	irgsp1_rep	CDS	416958	417032	.	+	0	Parent=Os05t0107300-01
Chr05	irgsp1_rep	CDS	417767	417837	.	+	0	Parent=Os05t0107300-01
Chr05	irgsp1_rep	CDS	417923	417980	.	+	1	Parent=Os05t0107300-01
Chr05	irgsp1_rep	CDS	418245	418449	.	+	0	Parent=Os05t0107300-01
Chr05	irgsp1_rep	CDS	418545	418595	.	+	2	Parent=Os05t0107300-01
Chr05	irgsp1_rep	CDS	418724	419214	.	+	2	Parent=Os05t0107300-01
Chr05	irgsp1_rep	three_prime_UTR	419215	419522	.	+	.	Parent=Os05t0107300-01
Chr05	irgsp1_rep	mRNA	421312	431613	.	-	.	ID=Os05t0107600-01;Name=Os05t0107600-01;Locus_id=Os05g0107600;CGSNL Gene Symbol=ABCD3;CGSNL Gene Name=ABC TRANSPORTER D FAMILY MEMBER 3;Oryzabase Gene Symbol Synonym(s)=OsABCD3;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCD subgroup member 3;Note=ABC transporter-like domain containing protein.;Transcript_evidence=AK120821 (DDBJ%2C Best hit);ORF_evidence=B9FM21 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C N-terminal (IPR010509),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);NIAS_FLcDNA=J023017F21;Oryzabase=11972;TENOR=Os05t0107600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	431557	431613	.	-	0	Parent=Os05t0107600-01
Chr05	irgsp1_rep	CDS	430306	430503	.	-	0	Parent=Os05t0107600-01
Chr05	irgsp1_rep	CDS	429661	430115	.	-	0	Parent=Os05t0107600-01
Chr05	irgsp1_rep	CDS	428534	428672	.	-	1	Parent=Os05t0107600-01
Chr05	irgsp1_rep	CDS	428381	428459	.	-	0	Parent=Os05t0107600-01
Chr05	irgsp1_rep	CDS	427348	427586	.	-	2	Parent=Os05t0107600-01
Chr05	irgsp1_rep	CDS	426935	427239	.	-	0	Parent=Os05t0107600-01
Chr05	irgsp1_rep	CDS	426746	426851	.	-	1	Parent=Os05t0107600-01
Chr05	irgsp1_rep	CDS	426488	426652	.	-	0	Parent=Os05t0107600-01
Chr05	irgsp1_rep	CDS	425903	426002	.	-	0	Parent=Os05t0107600-01
Chr05	irgsp1_rep	CDS	425709	425817	.	-	2	Parent=Os05t0107600-01
Chr05	irgsp1_rep	CDS	425351	425441	.	-	1	Parent=Os05t0107600-01
Chr05	irgsp1_rep	CDS	424926	425050	.	-	0	Parent=Os05t0107600-01
Chr05	irgsp1_rep	CDS	424666	424815	.	-	1	Parent=Os05t0107600-01
Chr05	irgsp1_rep	CDS	424498	424570	.	-	1	Parent=Os05t0107600-01
Chr05	irgsp1_rep	CDS	423641	423821	.	-	0	Parent=Os05t0107600-01
Chr05	irgsp1_rep	CDS	423389	423547	.	-	2	Parent=Os05t0107600-01
Chr05	irgsp1_rep	CDS	422863	423003	.	-	2	Parent=Os05t0107600-01
Chr05	irgsp1_rep	CDS	422561	422767	.	-	2	Parent=Os05t0107600-01
Chr05	irgsp1_rep	CDS	422296	422450	.	-	2	Parent=Os05t0107600-01
Chr05	irgsp1_rep	CDS	422149	422201	.	-	0	Parent=Os05t0107600-01
Chr05	irgsp1_rep	CDS	421982	422060	.	-	1	Parent=Os05t0107600-01
Chr05	irgsp1_rep	CDS	421716	421802	.	-	0	Parent=Os05t0107600-01
Chr05	irgsp1_rep	three_prime_UTR	421312	421715	.	-	.	Parent=Os05t0107600-01
Chr05	irgsp1_rep	mRNA	421200	428461	.	-	.	ID=Os05t0107600-02;Name=Os05t0107600-02;Locus_id=Os05g0107600;CGSNL Gene Symbol=ABCD3;CGSNL Gene Name=ABC TRANSPORTER D FAMILY MEMBER 3;Oryzabase Gene Symbol Synonym(s)=OsABCD3;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCD subgroup member 3;Note=Hypothetical conserved gene.;Transcript_evidence=AK099809 (DDBJ%2C Best hit);ORF_evidence=B9FM21 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C N-terminal (IPR010509),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);NIAS_FLcDNA=J013099A18;Oryzabase=11972;Expression=AK099809;TENOR=Os05t0107600-02;KEGG=Os05t0107600-02
Chr05	irgsp1_rep	five_prime_UTR	428460	428461	.	-	.	Parent=Os05t0107600-02
Chr05	irgsp1_rep	CDS	428381	428459	.	-	0	Parent=Os05t0107600-02
Chr05	irgsp1_rep	CDS	427348	427586	.	-	2	Parent=Os05t0107600-02
Chr05	irgsp1_rep	CDS	426935	427239	.	-	0	Parent=Os05t0107600-02
Chr05	irgsp1_rep	CDS	426746	426851	.	-	1	Parent=Os05t0107600-02
Chr05	irgsp1_rep	CDS	426488	426652	.	-	0	Parent=Os05t0107600-02
Chr05	irgsp1_rep	CDS	425903	426002	.	-	0	Parent=Os05t0107600-02
Chr05	irgsp1_rep	CDS	425709	425817	.	-	2	Parent=Os05t0107600-02
Chr05	irgsp1_rep	CDS	425351	425441	.	-	1	Parent=Os05t0107600-02
Chr05	irgsp1_rep	CDS	424926	425050	.	-	0	Parent=Os05t0107600-02
Chr05	irgsp1_rep	CDS	424666	424815	.	-	1	Parent=Os05t0107600-02
Chr05	irgsp1_rep	CDS	424498	424570	.	-	1	Parent=Os05t0107600-02
Chr05	irgsp1_rep	CDS	423641	423821	.	-	0	Parent=Os05t0107600-02
Chr05	irgsp1_rep	CDS	423389	423547	.	-	2	Parent=Os05t0107600-02
Chr05	irgsp1_rep	CDS	422863	423003	.	-	2	Parent=Os05t0107600-02
Chr05	irgsp1_rep	CDS	422561	422767	.	-	2	Parent=Os05t0107600-02
Chr05	irgsp1_rep	CDS	422296	422450	.	-	2	Parent=Os05t0107600-02
Chr05	irgsp1_rep	CDS	422149	422201	.	-	0	Parent=Os05t0107600-02
Chr05	irgsp1_rep	CDS	421982	422060	.	-	1	Parent=Os05t0107600-02
Chr05	irgsp1_rep	CDS	421716	421802	.	-	0	Parent=Os05t0107600-02
Chr05	irgsp1_rep	three_prime_UTR	421200	421715	.	-	.	Parent=Os05t0107600-02
Chr05	irgsp1_rep	mRNA	437043	443269	.	+	.	ID=Os05t0107700-01;Name=Os05t0107700-01;Locus_id=Os05g0107700;CGSNL Gene Symbol=XA5;CGSNL Gene Name=XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 5;Oryzabase Gene Symbol Synonym(s)=xa5%2C xa-5%2C Xa5%2C TFIIAy%2C OsTFIIAgamma5%2C TFIIAgamma5%2C OsTFIIAgamma5/Xa5;Oryzabase Gene Name Synonym(s)=Xanthomonas oryzae pv. oryzae resistance 5%2C Xanthomonas campestris pv. oryzae resistance-5%2C Xanthomonas oryzae pv. oryzae resistance-5%2C Transcription initiation factor IIA subunit 2%2C General transcription factor IIA subunit 2%2C Transcription initiation factor IIA gamma chain%2C TFIIA-gamma%2C gamma subunit of transcription factor IIA%2C basal transcription factor IIA gamma subunit  5;Note=Transcription factor IIA small subunit (Transcription factor IIA gamma subunit).;Transcript_evidence=AK065182 (DDBJ%2C Best hit);ORF_evidence=Q0DLD3 (UniProt);GO=Biological Process: transcription initiation from RNA polymerase II promoter (GO:0006367),Cellular Component: transcription factor TFIIA complex (GO:0005672);InterPro=Transcription initiation factor IIA%2C gamma subunit (IPR003194),Transcription factor IIA%2C helical (IPR009083),Transcription factor IIA%2C beta-barrel (IPR009088),Transcription initiation factor IIA%2C gamma subunit%2C C-terminal (IPR015871),Transcription initiation factor IIA%2C gamma subunit%2C N-terminal (IPR015872);NIAS_FLcDNA=J013002D19;Oryzabase=668;Expression=AK065182;TENOR=Os05t0107700-01;KEGG=Os05t0107700-01
Chr05	irgsp1_rep	five_prime_UTR	437043	437138	.	+	.	Parent=Os05t0107700-01
Chr05	irgsp1_rep	five_prime_UTR	437272	437383	.	+	.	Parent=Os05t0107700-01
Chr05	irgsp1_rep	CDS	437384	437512	.	+	0	Parent=Os05t0107700-01
Chr05	irgsp1_rep	CDS	437607	437657	.	+	0	Parent=Os05t0107700-01
Chr05	irgsp1_rep	CDS	442753	442893	.	+	0	Parent=Os05t0107700-01
Chr05	irgsp1_rep	three_prime_UTR	442894	443269	.	+	.	Parent=Os05t0107700-01
Chr05	irgsp1_rep	mRNA	438641	439153	.	+	.	ID=Os05t0107801-00;Name=Os05t0107801-00;Locus_id=Os05g0107801;Note=Conserved hypothetical protein.;Transcript_evidence=EU941532 (DDBJ);ORF_evidence=XP_002489292.1 (RefSeq);TENOR=Os05t0107801-00
Chr05	irgsp1_rep	CDS	438641	439009	.	+	0	Parent=Os05t0107801-00
Chr05	irgsp1_rep	three_prime_UTR	439010	439153	.	+	.	Parent=Os05t0107801-00
Chr05	irgsp1_rep	mRNA	446567	448695	.	+	.	ID=Os05t0107900-01;Name=Os05t0107900-01;Locus_id=Os05g0107900;Oryzabase Gene Symbol Synonym(s)=OsDi19-6;Oryzabase Gene Name Synonym(s)=drought-induced 19-6;Note=Similar to Protein DEHYDRATION-INDUCED 19 homolog 6.;Transcript_evidence=AK121060 (DDBJ%2C Best hit);ORF_evidence=Q7XBA5 (UniProt);InterPro=Drought induced 19/ RING finger protein 114 (IPR008598);NIAS_FLcDNA=J023057C17;Oryzabase=18581;Expression=AK121060;TENOR=Os05t0107900-01;KEGG=Os05t0107900-01
Chr05	irgsp1_rep	five_prime_UTR	446567	446619	.	+	.	Parent=Os05t0107900-01
Chr05	irgsp1_rep	five_prime_UTR	447316	447317	.	+	.	Parent=Os05t0107900-01
Chr05	irgsp1_rep	CDS	447318	447428	.	+	0	Parent=Os05t0107900-01
Chr05	irgsp1_rep	CDS	447840	447917	.	+	0	Parent=Os05t0107900-01
Chr05	irgsp1_rep	CDS	448076	448320	.	+	0	Parent=Os05t0107900-01
Chr05	irgsp1_rep	CDS	448428	448533	.	+	1	Parent=Os05t0107900-01
Chr05	irgsp1_rep	three_prime_UTR	448534	448695	.	+	.	Parent=Os05t0107900-01
Chr05	irgsp1_rep	mRNA	448854	453209	.	-	.	ID=Os05t0108000-01;Name=Os05t0108000-01;Locus_id=Os05g0108000;Note=tRNA pseudouridine synthase B family protein.;Transcript_evidence=AK065542 (DDBJ%2C Best hit);ORF_evidence=NP_001150630.1 (RefSeq);GO=Biological Process: pseudouridine synthesis (GO:0001522),Biological Process: RNA processing (GO:0006396),Biological Process: RNA modification (GO:0009451),Molecular Function: RNA binding (GO:0003723),Molecular Function: pseudouridine synthase activity (GO:0009982);InterPro=Pseudouridine synthase II (IPR002501),tRNA pseudouridine synthase II%2C TruB (IPR014780),Pseudouridine synthase%2C catalytic domain (IPR020103);NIAS_FLcDNA=J013033A01;Expression=AK065542;TENOR=Os05t0108000-01;KEGG=Os05t0108000-01 (EC:5.4.99.12)
Chr05	irgsp1_rep	five_prime_UTR	453156	453209	.	-	.	Parent=Os05t0108000-01
Chr05	irgsp1_rep	CDS	452321	453155	.	-	0	Parent=Os05t0108000-01
Chr05	irgsp1_rep	CDS	451692	451747	.	-	2	Parent=Os05t0108000-01
Chr05	irgsp1_rep	CDS	451527	451609	.	-	0	Parent=Os05t0108000-01
Chr05	irgsp1_rep	CDS	451259	451337	.	-	1	Parent=Os05t0108000-01
Chr05	irgsp1_rep	CDS	450812	450922	.	-	0	Parent=Os05t0108000-01
Chr05	irgsp1_rep	CDS	450202	450311	.	-	0	Parent=Os05t0108000-01
Chr05	irgsp1_rep	CDS	450000	450083	.	-	1	Parent=Os05t0108000-01
Chr05	irgsp1_rep	CDS	449447	449484	.	-	1	Parent=Os05t0108000-01
Chr05	irgsp1_rep	CDS	449197	449267	.	-	2	Parent=Os05t0108000-01
Chr05	irgsp1_rep	three_prime_UTR	448854	449196	.	-	.	Parent=Os05t0108000-01
Chr05	irgsp1_rep	mRNA	449168	453155	.	+	.	ID=Os05t0108050-00;Name=Os05t0108050-00;Locus_id=Os05g0108050;Note=Hypothetical protein.;Transcript_evidence=tplb0059c21 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0108050-00
Chr05	irgsp1_rep	five_prime_UTR	449168	449262	.	+	.	Parent=Os05t0108050-00
Chr05	irgsp1_rep	five_prime_UTR	449966	450081	.	+	.	Parent=Os05t0108050-00
Chr05	irgsp1_rep	five_prime_UTR	450197	450309	.	+	.	Parent=Os05t0108050-00
Chr05	irgsp1_rep	five_prime_UTR	450810	450906	.	+	.	Parent=Os05t0108050-00
Chr05	irgsp1_rep	five_prime_UTR	451243	451337	.	+	.	Parent=Os05t0108050-00
Chr05	irgsp1_rep	five_prime_UTR	451527	451634	.	+	.	Parent=Os05t0108050-00
Chr05	irgsp1_rep	five_prime_UTR	452288	452334	.	+	.	Parent=Os05t0108050-00
Chr05	irgsp1_rep	CDS	452335	452715	.	+	0	Parent=Os05t0108050-00
Chr05	irgsp1_rep	three_prime_UTR	452716	453155	.	+	.	Parent=Os05t0108050-00
Chr05	irgsp1_rep	mRNA	453992	458256	.	-	.	ID=Os05t0108100-01;Name=Os05t0108100-01;Locus_id=Os05g0108100;Note=Protein of unknown function DUF707 family protein.;Transcript_evidence=AK065445 (DDBJ%2C Best hit);ORF_evidence=B4FSQ8 (UniProt);InterPro=Protein of unknown function DUF707 (IPR007877);NIAS_FLcDNA=J013002L22;Expression=AK065445;TENOR=Os05t0108100-01;KEGG=Os05t0108100-01
Chr05	irgsp1_rep	five_prime_UTR	457941	458256	.	-	.	Parent=Os05t0108100-01
Chr05	irgsp1_rep	five_prime_UTR	457112	457256	.	-	.	Parent=Os05t0108100-01
Chr05	irgsp1_rep	CDS	457083	457111	.	-	0	Parent=Os05t0108100-01
Chr05	irgsp1_rep	CDS	456880	456988	.	-	1	Parent=Os05t0108100-01
Chr05	irgsp1_rep	CDS	456645	456788	.	-	0	Parent=Os05t0108100-01
Chr05	irgsp1_rep	CDS	456341	456445	.	-	0	Parent=Os05t0108100-01
Chr05	irgsp1_rep	CDS	455904	455987	.	-	0	Parent=Os05t0108100-01
Chr05	irgsp1_rep	CDS	455654	455769	.	-	0	Parent=Os05t0108100-01
Chr05	irgsp1_rep	CDS	455459	455560	.	-	1	Parent=Os05t0108100-01
Chr05	irgsp1_rep	CDS	455257	455370	.	-	1	Parent=Os05t0108100-01
Chr05	irgsp1_rep	CDS	455079	455135	.	-	1	Parent=Os05t0108100-01
Chr05	irgsp1_rep	CDS	454899	454965	.	-	1	Parent=Os05t0108100-01
Chr05	irgsp1_rep	CDS	454757	454810	.	-	0	Parent=Os05t0108100-01
Chr05	irgsp1_rep	CDS	454595	454669	.	-	0	Parent=Os05t0108100-01
Chr05	irgsp1_rep	CDS	454459	454494	.	-	0	Parent=Os05t0108100-01
Chr05	irgsp1_rep	CDS	454259	454372	.	-	0	Parent=Os05t0108100-01
Chr05	irgsp1_rep	three_prime_UTR	453992	454258	.	-	.	Parent=Os05t0108100-01
Chr05	irgsp1_rep	mRNA	454257	455517	.	+	.	ID=Os05t0108200-00;Name=Os05t0108200-00;Locus_id=Os05g0108200;Note=Hypothetical protein.;Transcript_evidence=BT016843 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0108200-00
Chr05	irgsp1_rep	five_prime_UTR	454257	454365	.	+	.	Parent=Os05t0108200-00
Chr05	irgsp1_rep	five_prime_UTR	454452	454466	.	+	.	Parent=Os05t0108200-00
Chr05	irgsp1_rep	CDS	454467	454503	.	+	0	Parent=Os05t0108200-00
Chr05	irgsp1_rep	CDS	454607	454660	.	+	2	Parent=Os05t0108200-00
Chr05	irgsp1_rep	CDS	454746	454810	.	+	2	Parent=Os05t0108200-00
Chr05	irgsp1_rep	CDS	454899	454988	.	+	0	Parent=Os05t0108200-00
Chr05	irgsp1_rep	CDS	455237	455356	.	+	0	Parent=Os05t0108200-00
Chr05	irgsp1_rep	three_prime_UTR	455357	455366	.	+	.	Parent=Os05t0108200-00
Chr05	irgsp1_rep	three_prime_UTR	455454	455517	.	+	.	Parent=Os05t0108200-00
Chr05	irgsp1_rep	mRNA	471400	476283	.	+	.	ID=Os05t0108300-01;Name=Os05t0108300-01;Locus_id=Os05g0108300;CGSNL Gene Symbol=WNK2;CGSNL Gene Name=WITH NO LYSINE KINASE 2;Oryzabase Gene Symbol Synonym(s)=OsWNK2;Oryzabase Gene Name Synonym(s)=With No Lysine kinase 2%2C WNK protein kinase 2%2C WNK kinase 2;Note=Similar to MAP kinase-like protein.;Transcript_evidence=AK070061 (DDBJ%2C Best hit);ORF_evidence=Q84RS1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023042N03;Oryzabase=20437;Expression=AK070061;TENOR=Os05t0108300-01;KEGG=Os05t0108300-01
Chr05	irgsp1_rep	five_prime_UTR	471400	471583	.	+	.	Parent=Os05t0108300-01
Chr05	irgsp1_rep	CDS	471584	471670	.	+	0	Parent=Os05t0108300-01
Chr05	irgsp1_rep	CDS	471782	471819	.	+	0	Parent=Os05t0108300-01
Chr05	irgsp1_rep	CDS	472761	472988	.	+	1	Parent=Os05t0108300-01
Chr05	irgsp1_rep	CDS	473298	473521	.	+	1	Parent=Os05t0108300-01
Chr05	irgsp1_rep	CDS	473595	473752	.	+	2	Parent=Os05t0108300-01
Chr05	irgsp1_rep	CDS	474447	474624	.	+	0	Parent=Os05t0108300-01
Chr05	irgsp1_rep	CDS	474693	474773	.	+	2	Parent=Os05t0108300-01
Chr05	irgsp1_rep	CDS	474868	475014	.	+	2	Parent=Os05t0108300-01
Chr05	irgsp1_rep	CDS	475104	475828	.	+	2	Parent=Os05t0108300-01
Chr05	irgsp1_rep	three_prime_UTR	475829	476283	.	+	.	Parent=Os05t0108300-01
Chr05	irgsp1_rep	mRNA	471503	475971	.	-	.	ID=Os05t0108350-00;Name=Os05t0108350-00;Locus_id=Os05g0108350;Note=Hypothetical protein.;Transcript_evidence=tplb0061f07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0108350-00
Chr05	irgsp1_rep	five_prime_UTR	475637	475971	.	-	.	Parent=Os05t0108350-00
Chr05	irgsp1_rep	CDS	475322	475636	.	-	0	Parent=Os05t0108350-00
Chr05	irgsp1_rep	three_prime_UTR	475101	475321	.	-	.	Parent=Os05t0108350-00
Chr05	irgsp1_rep	three_prime_UTR	474790	475011	.	-	.	Parent=Os05t0108350-00
Chr05	irgsp1_rep	three_prime_UTR	474442	474631	.	-	.	Parent=Os05t0108350-00
Chr05	irgsp1_rep	three_prime_UTR	473579	473747	.	-	.	Parent=Os05t0108350-00
Chr05	irgsp1_rep	three_prime_UTR	473302	473506	.	-	.	Parent=Os05t0108350-00
Chr05	irgsp1_rep	three_prime_UTR	472753	472995	.	-	.	Parent=Os05t0108350-00
Chr05	irgsp1_rep	three_prime_UTR	471503	471701	.	-	.	Parent=Os05t0108350-00
Chr05	irgsp1_rep	mRNA	478009	479130	.	+	.	ID=Os05t0108400-01;Name=Os05t0108400-01;Locus_id=Os05g0108400;Note=Protein of unknown function DUF868%2C plant family protein.;Transcript_evidence=AK119954 (DDBJ%2C Best hit);ORF_evidence=Q94HK8 (UniProt);InterPro=Protein of unknown function DUF868%2C plant (IPR008586);NIAS_FLcDNA=002-184-C08;Expression=AK119954;TENOR=Os05t0108400-01;KEGG=Os05t0108400-01
Chr05	irgsp1_rep	five_prime_UTR	478009	478105	.	+	.	Parent=Os05t0108400-01
Chr05	irgsp1_rep	CDS	478106	479026	.	+	0	Parent=Os05t0108400-01
Chr05	irgsp1_rep	three_prime_UTR	479027	479130	.	+	.	Parent=Os05t0108400-01
Chr05	irgsp1_rep	mRNA	483703	488830	.	-	.	ID=Os05t0108450-01;Name=Os05t0108450-01;Locus_id=Os05g0108450;Note=Hypothetical gene.;Transcript_evidence=AK288244 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090014C01;TENOR=Os05t0108450-01;KEGG=Os05t0108450-01
Chr05	irgsp1_rep	five_prime_UTR	486935	488830	.	-	.	Parent=Os05t0108450-01
Chr05	irgsp1_rep	CDS	486080	486934	.	-	0	Parent=Os05t0108450-01
Chr05	irgsp1_rep	three_prime_UTR	483703	486079	.	-	.	Parent=Os05t0108450-01
Chr05	irgsp1_rep	mRNA	484002	484559	.	+	.	ID=Os05t0108500-01;Name=Os05t0108500-01;Locus_id=Os05g0108500;Note=Nucleotide excision repair%2C TFIIH%2C subunit TTDA domain containing protein.;Transcript_evidence=AK062946 (DDBJ%2C Best hit);ORF_evidence=NP_001148022.1 (RefSeq);GO=Biological Process: nucleotide-excision repair (GO:0006289),Molecular Function: DNA binding (GO:0003677);InterPro=Nucleotide excision repair%2C TFIIH%2C subunit TTDA (IPR009400);NIAS_FLcDNA=001-109-C03;Expression=AK062946;TENOR=Os05t0108500-01;KEGG=Os05t0108500-01
Chr05	irgsp1_rep	five_prime_UTR	484002	484018	.	+	.	Parent=Os05t0108500-01
Chr05	irgsp1_rep	CDS	484019	484046	.	+	0	Parent=Os05t0108500-01
Chr05	irgsp1_rep	CDS	484125	484294	.	+	2	Parent=Os05t0108500-01
Chr05	irgsp1_rep	three_prime_UTR	484295	484559	.	+	.	Parent=Os05t0108500-01
Chr05	irgsp1_rep	mRNA	486058	488356	.	+	.	ID=Os05t0108600-01;Name=Os05t0108600-01;Locus_id=Os05g0108600;Note=Similar to Xylem cysteine proteinase 2 precursor (EC 3.4.22.-) (AtXCP2).;Transcript_evidence=AK106508 (DDBJ%2C Best hit);ORF_evidence=B4ESE7 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase%2C cysteine peptidase active site (IPR000169),Peptidase C1A%2C papain C-terminal (IPR000668),Peptidase C1A%2C papain (IPR013128),Proteinase inhibitor I29%2C cathepsin propeptide (IPR013201);NIAS_FLcDNA=002-105-G09;Oryzabase=14985;Expression=AK106508;TENOR=Os05t0108600-01;KEGG=Os05t0108600-01
Chr05	irgsp1_rep	five_prime_UTR	486058	486130	.	+	.	Parent=Os05t0108600-01
Chr05	irgsp1_rep	CDS	486131	486991	.	+	0	Parent=Os05t0108600-01
Chr05	irgsp1_rep	CDS	487882	488097	.	+	0	Parent=Os05t0108600-01
Chr05	irgsp1_rep	three_prime_UTR	488098	488356	.	+	.	Parent=Os05t0108600-01
Chr05	irgsp1_rep	mRNA	492384	494192	.	+	.	ID=Os05t0108800-01;Name=Os05t0108800-01;Locus_id=Os05g0108800;Oryzabase Gene Name Synonym(s)=cytoChrome b5%2C cytoChrome b-5;Note=CytoChrome b5.;Transcript_evidence=AK064821 (DDBJ%2C Best hit);ORF_evidence=A2WZK1 (UniProt);GO=Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome b5 (IPR001199),CytoChrome b5%2C heme-binding site (IPR018506);NIAS_FLcDNA=J013000E24;Oryzabase=14459;Expression=AK064821;TENOR=Os05t0108800-01;KEGG=Os05t0108800-01
Chr05	irgsp1_rep	five_prime_UTR	492384	492526	.	+	.	Parent=Os05t0108800-01
Chr05	irgsp1_rep	CDS	492527	492616	.	+	0	Parent=Os05t0108800-01
Chr05	irgsp1_rep	CDS	493567	493633	.	+	0	Parent=Os05t0108800-01
Chr05	irgsp1_rep	CDS	493753	494009	.	+	2	Parent=Os05t0108800-01
Chr05	irgsp1_rep	three_prime_UTR	494010	494192	.	+	.	Parent=Os05t0108800-01
Chr05	irgsp1_rep	mRNA	492497	494056	.	-	.	ID=Os05t0108950-00;Name=Os05t0108950-00;Locus_id=Os05g0108950;Note=Hypothetical gene.;Transcript_evidence=BT016918 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0108950-00;KEGG=Os05t0108950-00
Chr05	irgsp1_rep	five_prime_UTR	494055	494056	.	-	.	Parent=Os05t0108950-00
Chr05	irgsp1_rep	CDS	493744	494054	.	-	0	Parent=Os05t0108950-00
Chr05	irgsp1_rep	CDS	493621	493624	.	-	1	Parent=Os05t0108950-00
Chr05	irgsp1_rep	three_prime_UTR	493573	493620	.	-	.	Parent=Os05t0108950-00
Chr05	irgsp1_rep	three_prime_UTR	492497	492623	.	-	.	Parent=Os05t0108950-00
Chr05	irgsp1_rep	mRNA	494751	498039	.	-	.	ID=Os05t0109100-00;Name=Os05t0109100-00;Locus_id=Os05g0109100;Note=Similar to OSIGBa0138H21-OSIGBa0138E01.10 protein.;Transcript_evidence=tplb0015b23 (Wheat FLcDNA);ORF_evidence=Q01HY6 (UniProt);TENOR=Os05t0109100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	497948	498039	.	-	.	Parent=Os05t0109100-00
Chr05	irgsp1_rep	CDS	497870	497947	.	-	0	Parent=Os05t0109100-00
Chr05	irgsp1_rep	CDS	497257	497386	.	-	0	Parent=Os05t0109100-00
Chr05	irgsp1_rep	CDS	494800	495056	.	-	2	Parent=Os05t0109100-00
Chr05	irgsp1_rep	three_prime_UTR	494751	494799	.	-	.	Parent=Os05t0109100-00
Chr05	irgsp1_rep	mRNA	514864	516038	.	+	.	ID=Os05t0109400-00;Name=Os05t0109400-00;Locus_id=Os05g0109400;Note=Conserved hypothetical protein.;Transcript_evidence=AK355909 (DDBJ);ORF_evidence=Q94HK1 (UniProt);TENOR=Os05t0109400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	514864	515121	.	+	0	Parent=Os05t0109400-00
Chr05	irgsp1_rep	CDS	515460	516038	.	+	0	Parent=Os05t0109400-00
Chr05	irgsp1_rep	mRNA	516952	522941	.	-	.	ID=Os05t0109600-01;Name=Os05t0109600-01;Locus_id=Os05g0109600;Note=RNA binding protein PufA.;Transcript_evidence=AK240908 (DDBJ%2C Best hit);ORF_evidence=Q8LLB9 (UniProt);GO=Molecular Function: RNA binding (GO:0003723),Molecular Function: binding (GO:0005488);InterPro=Pumilio RNA-binding repeat (IPR001313),Armadillo-like helical (IPR011989),Nucleic acid binding NABP (IPR012940),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J065036M21;TENOR=Os05t0109600-01;KEGG=Os05t0109600-01
Chr05	irgsp1_rep	five_prime_UTR	522586	522941	.	-	.	Parent=Os05t0109600-01
Chr05	irgsp1_rep	CDS	522187	522585	.	-	0	Parent=Os05t0109600-01
Chr05	irgsp1_rep	CDS	520502	521763	.	-	0	Parent=Os05t0109600-01
Chr05	irgsp1_rep	CDS	519966	520107	.	-	1	Parent=Os05t0109600-01
Chr05	irgsp1_rep	CDS	519777	519884	.	-	0	Parent=Os05t0109600-01
Chr05	irgsp1_rep	CDS	519038	519250	.	-	0	Parent=Os05t0109600-01
Chr05	irgsp1_rep	CDS	518834	518944	.	-	0	Parent=Os05t0109600-01
Chr05	irgsp1_rep	CDS	518003	518197	.	-	0	Parent=Os05t0109600-01
Chr05	irgsp1_rep	CDS	517695	517869	.	-	0	Parent=Os05t0109600-01
Chr05	irgsp1_rep	CDS	517556	517599	.	-	2	Parent=Os05t0109600-01
Chr05	irgsp1_rep	three_prime_UTR	516952	517555	.	-	.	Parent=Os05t0109600-01
Chr05	irgsp1_rep	mRNA	519999	522451	.	+	.	ID=Os05t0109650-00;Name=Os05t0109650-00;Locus_id=Os05g0109650;Note=Hypothetical gene.;Transcript_evidence=BT083530 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0109650-00;KEGG=Os05t0109650-00
Chr05	irgsp1_rep	five_prime_UTR	519999	520110	.	+	.	Parent=Os05t0109650-00
Chr05	irgsp1_rep	five_prime_UTR	520505	521670	.	+	.	Parent=Os05t0109650-00
Chr05	irgsp1_rep	CDS	521671	521784	.	+	0	Parent=Os05t0109650-00
Chr05	irgsp1_rep	CDS	522206	522397	.	+	0	Parent=Os05t0109650-00
Chr05	irgsp1_rep	three_prime_UTR	522398	522451	.	+	.	Parent=Os05t0109650-00
Chr05	irgsp1_rep	mRNA	538162	538877	.	-	.	ID=Os05t0109825-00;Name=Os05t0109825-00;Locus_id=Os05g0109825;Note=Hypothetical protein.;Transcript_evidence=BT018878 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0109825-00
Chr05	irgsp1_rep	five_prime_UTR	538877	538877	.	-	.	Parent=Os05t0109825-00
Chr05	irgsp1_rep	CDS	538162	538876	.	-	0	Parent=Os05t0109825-00
Chr05	irgsp1_rep	mRNA	538304	539630	.	+	.	ID=Os05t0110000-01;Name=Os05t0110000-01;Locus_id=Os05g0110000;Oryzabase Gene Symbol Synonym(s)=OsRFP;Oryzabase Gene Name Synonym(s)=RING finger protein;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK067181 (DDBJ%2C Best hit);ORF_evidence=Q94HJ7 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Domain of unknown function DUF1117 (IPR010543),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J013094N21;Oryzabase=21155;Expression=AK067181;TENOR=Os05t0110000-01;KEGG=Os05t0110000-01 (EC:6.3.2.19)
Chr05	irgsp1_rep	five_prime_UTR	538304	538306	.	+	.	Parent=Os05t0110000-01
Chr05	irgsp1_rep	CDS	538307	539308	.	+	0	Parent=Os05t0110000-01
Chr05	irgsp1_rep	three_prime_UTR	539309	539630	.	+	.	Parent=Os05t0110000-01
Chr05	irgsp1_rep	mRNA	542178	542952	.	+	.	ID=Os05t0110100-01;Name=Os05t0110100-01;Locus_id=Os05g0110100;Note=Heat shock protein DnaJ%2C cysteine-rich domain domain containing protein.;Transcript_evidence=AK121142 (DDBJ%2C Best hit);ORF_evidence=A2XZJ9 (UniProt);GO=Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C cysteine-rich domain (IPR001305);NIAS_FLcDNA=J023077M04;Expression=AK121142;TENOR=Os05t0110100-01;KEGG=Os05t0110100-01
Chr05	irgsp1_rep	five_prime_UTR	542178	542237	.	+	.	Parent=Os05t0110100-01
Chr05	irgsp1_rep	CDS	542238	542633	.	+	0	Parent=Os05t0110100-01
Chr05	irgsp1_rep	three_prime_UTR	542634	542952	.	+	.	Parent=Os05t0110100-01
Chr05	irgsp1_rep	mRNA	542205	542923	.	+	.	ID=Os05t0110100-02;Name=Os05t0110100-02;Locus_id=Os05g0110100;Note=Heat shock protein DnaJ%2C cysteine-rich domain domain containing protein.;Transcript_evidence=AK099779 (DDBJ%2C Best hit);ORF_evidence=A2XZJ9 (UniProt);GO=Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C cysteine-rich domain (IPR001305);NIAS_FLcDNA=J013095J12;Expression=AK099779;TENOR=Os05t0110100-02;KEGG=Os05t0110100-02
Chr05	irgsp1_rep	five_prime_UTR	542205	542237	.	+	.	Parent=Os05t0110100-02
Chr05	irgsp1_rep	CDS	542238	542633	.	+	0	Parent=Os05t0110100-02
Chr05	irgsp1_rep	three_prime_UTR	542634	542923	.	+	.	Parent=Os05t0110100-02
Chr05	irgsp1_rep	mRNA	548370	548715	.	-	.	ID=Os05t0110200-00;Name=Os05t0110200-00;Locus_id=Os05g0110200;Note=DVL family protein.;Transcript_evidence=FP097166 (DDBJ);ORF_evidence=NP_565910.1 (RefSeq);InterPro=DVL (IPR012552);TENOR=Os05t0110200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	548401	548715	.	-	0	Parent=Os05t0110200-00
Chr05	irgsp1_rep	three_prime_UTR	548370	548400	.	-	.	Parent=Os05t0110200-00
Chr05	irgsp1_rep	mRNA	552043	561773	.	+	.	ID=Os05t0110300-01;Name=Os05t0110300-01;Locus_id=Os05g0110300;Note=Similar to NAD-dependent epimerase/dehydratase.;Transcript_evidence=AK071038 (DDBJ%2C Best hit);ORF_evidence=B4FH62 (UniProt);GO=Biological Process: steroid biosynthetic process (GO:0006694),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: 3-beta-hydroxy-delta5-steroid dehydrogenase activity (GO:0003854),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616);InterPro=3-beta hydroxysteroid dehydrogenase/isomerase (IPR002225),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023080F17;TENOR=Os05t0110300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	552043	552274	.	+	0	Parent=Os05t0110300-01
Chr05	irgsp1_rep	CDS	552509	552780	.	+	2	Parent=Os05t0110300-01
Chr05	irgsp1_rep	CDS	552875	552911	.	+	0	Parent=Os05t0110300-01
Chr05	irgsp1_rep	CDS	553088	553185	.	+	2	Parent=Os05t0110300-01
Chr05	irgsp1_rep	CDS	553324	553385	.	+	0	Parent=Os05t0110300-01
Chr05	irgsp1_rep	CDS	553669	553792	.	+	1	Parent=Os05t0110300-01
Chr05	irgsp1_rep	CDS	554033	554152	.	+	0	Parent=Os05t0110300-01
Chr05	irgsp1_rep	three_prime_UTR	554153	554218	.	+	.	Parent=Os05t0110300-01
Chr05	irgsp1_rep	three_prime_UTR	561112	561330	.	+	.	Parent=Os05t0110300-01
Chr05	irgsp1_rep	three_prime_UTR	561417	561773	.	+	.	Parent=Os05t0110300-01
Chr05	irgsp1_rep	mRNA	552060	561495	.	+	.	ID=Os05t0110300-02;Name=Os05t0110300-02;Locus_id=Os05g0110300;Note=Similar to NAD-dependent epimerase/dehydratase.;Transcript_evidence=AK067116 (DDBJ%2C Best hit);ORF_evidence=B4FH62 (UniProt);GO=Biological Process: steroid biosynthetic process (GO:0006694),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: 3-beta-hydroxy-delta5-steroid dehydrogenase activity (GO:0003854),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616);InterPro=3-beta hydroxysteroid dehydrogenase/isomerase (IPR002225),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013096K17;TENOR=Os05t0110300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	552060	552060	.	+	.	Parent=Os05t0110300-02
Chr05	irgsp1_rep	CDS	552061	552274	.	+	0	Parent=Os05t0110300-02
Chr05	irgsp1_rep	CDS	552509	552780	.	+	2	Parent=Os05t0110300-02
Chr05	irgsp1_rep	CDS	552875	552911	.	+	0	Parent=Os05t0110300-02
Chr05	irgsp1_rep	CDS	553088	553185	.	+	2	Parent=Os05t0110300-02
Chr05	irgsp1_rep	CDS	553324	553385	.	+	0	Parent=Os05t0110300-02
Chr05	irgsp1_rep	CDS	553669	553792	.	+	1	Parent=Os05t0110300-02
Chr05	irgsp1_rep	CDS	554033	554152	.	+	0	Parent=Os05t0110300-02
Chr05	irgsp1_rep	three_prime_UTR	554153	554218	.	+	.	Parent=Os05t0110300-02
Chr05	irgsp1_rep	three_prime_UTR	561112	561495	.	+	.	Parent=Os05t0110300-02
Chr05	irgsp1_rep	mRNA	562876	565266	.	+	.	ID=Os05t0110500-01;Name=Os05t0110500-01;Locus_id=Os05g0110500;Oryzabase Gene Symbol Synonym(s)=OsRH17;Oryzabase Gene Name Synonym(s)=RNA helicase 17;Note=Similar to DEAD-box ATP-dependent RNA helicase 17.;Transcript_evidence=AK060179 (DDBJ%2C Best hit);ORF_evidence=Q0DLB9-2;GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=001-001-A08;Oryzabase=19123;TENOR=Os05t0110500-01
Chr05	irgsp1_rep	five_prime_UTR	562876	562961	.	+	.	Parent=Os05t0110500-01
Chr05	irgsp1_rep	CDS	562962	563079	.	+	0	Parent=Os05t0110500-01
Chr05	irgsp1_rep	CDS	563332	563404	.	+	2	Parent=Os05t0110500-01
Chr05	irgsp1_rep	CDS	563497	563606	.	+	1	Parent=Os05t0110500-01
Chr05	irgsp1_rep	CDS	563745	563888	.	+	2	Parent=Os05t0110500-01
Chr05	irgsp1_rep	CDS	563973	564081	.	+	2	Parent=Os05t0110500-01
Chr05	irgsp1_rep	CDS	564181	564527	.	+	1	Parent=Os05t0110500-01
Chr05	irgsp1_rep	CDS	564605	564678	.	+	2	Parent=Os05t0110500-01
Chr05	irgsp1_rep	CDS	564823	565152	.	+	0	Parent=Os05t0110500-01
Chr05	irgsp1_rep	three_prime_UTR	565153	565266	.	+	.	Parent=Os05t0110500-01
Chr05	irgsp1_rep	mRNA	562926	566453	.	+	.	ID=Os05t0110500-02;Name=Os05t0110500-02;Locus_id=Os05g0110500;RAP-DB Gene Symbol Synonym(s)=OsRH17;RAP-DB Gene Name Synonym(s)=RNA helicase 17;Oryzabase Gene Symbol Synonym(s)=OsRH17;Oryzabase Gene Name Synonym(s)=RNA helicase 17;Note=DEAD-box RNA helicase protein%2C Stress responses;Transcript_evidence=AK066175;ORF_evidence=Q0DLB9;GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: ATP binding (GO:0005524);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014),Helicase superfamily 1/2%2C ATP-binding domain (IPR014001),DEAD/DEAH box helicase domain (IPR011545),Helicase%2C C-terminal (IPR001650),Domain of unknown function DUF4217 (IPR025313);NIAS_FLcDNA=J013055E22;Manual Curation=December 17%2C 2014;Literature_PMID=25447922;Oryzabase=19123;TENOR=Os05t0110500-02;KEGG=Os05t0110500-02
Chr05	irgsp1_rep	five_prime_UTR	562926	562961	.	+	.	Parent=Os05t0110500-02
Chr05	irgsp1_rep	CDS	562962	563079	.	+	0	Parent=Os05t0110500-02
Chr05	irgsp1_rep	CDS	563332	563404	.	+	2	Parent=Os05t0110500-02
Chr05	irgsp1_rep	CDS	563497	563606	.	+	1	Parent=Os05t0110500-02
Chr05	irgsp1_rep	CDS	563745	563888	.	+	2	Parent=Os05t0110500-02
Chr05	irgsp1_rep	CDS	563973	564081	.	+	2	Parent=Os05t0110500-02
Chr05	irgsp1_rep	CDS	564181	564527	.	+	1	Parent=Os05t0110500-02
Chr05	irgsp1_rep	CDS	564605	564678	.	+	2	Parent=Os05t0110500-02
Chr05	irgsp1_rep	CDS	564823	565127	.	+	0	Parent=Os05t0110500-02
Chr05	irgsp1_rep	CDS	565513	565759	.	+	1	Parent=Os05t0110500-02
Chr05	irgsp1_rep	CDS	565934	566182	.	+	0	Parent=Os05t0110500-02
Chr05	irgsp1_rep	three_prime_UTR	566183	566453	.	+	.	Parent=Os05t0110500-02
Chr05	irgsp1_rep	mRNA	566502	568227	.	-	.	ID=Os05t0110600-01;Name=Os05t0110600-01;Locus_id=Os05g0110600;Note=Rab5-interacting family protein.;Transcript_evidence=AK121048 (DDBJ%2C Best hit);ORF_evidence=NP_001149304.1 (RefSeq);InterPro=Rab5-interacting (IPR010742);NIAS_FLcDNA=J023055F18;Expression=AK121048;TENOR=Os05t0110600-01;KEGG=Os05t0110600-01
Chr05	irgsp1_rep	five_prime_UTR	568142	568227	.	-	.	Parent=Os05t0110600-01
Chr05	irgsp1_rep	CDS	568031	568141	.	-	0	Parent=Os05t0110600-01
Chr05	irgsp1_rep	CDS	567828	567931	.	-	0	Parent=Os05t0110600-01
Chr05	irgsp1_rep	CDS	566914	567043	.	-	1	Parent=Os05t0110600-01
Chr05	irgsp1_rep	CDS	566788	566826	.	-	0	Parent=Os05t0110600-01
Chr05	irgsp1_rep	three_prime_UTR	566502	566787	.	-	.	Parent=Os05t0110600-01
Chr05	irgsp1_rep	mRNA	568790	572502	.	-	.	ID=Os05t0110700-01;Name=Os05t0110700-01;Locus_id=Os05g0110700;Note=Chromosome segregation protein Spc25 domain containing protein.;Transcript_evidence=AK102486 (DDBJ%2C Best hit);ORF_evidence=Q94HI9 (UniProt);InterPro=Chromosome segregation protein Spc25 (IPR013255);NIAS_FLcDNA=J033094M07;TENOR=Os05t0110700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	572501	572502	.	-	.	Parent=Os05t0110700-01
Chr05	irgsp1_rep	CDS	572200	572500	.	-	0	Parent=Os05t0110700-01
Chr05	irgsp1_rep	CDS	571573	571638	.	-	2	Parent=Os05t0110700-01
Chr05	irgsp1_rep	CDS	571353	571499	.	-	2	Parent=Os05t0110700-01
Chr05	irgsp1_rep	CDS	571071	571184	.	-	2	Parent=Os05t0110700-01
Chr05	irgsp1_rep	CDS	570737	570826	.	-	2	Parent=Os05t0110700-01
Chr05	irgsp1_rep	CDS	570513	570641	.	-	2	Parent=Os05t0110700-01
Chr05	irgsp1_rep	CDS	569787	570013	.	-	2	Parent=Os05t0110700-01
Chr05	irgsp1_rep	CDS	569096	569107	.	-	0	Parent=Os05t0110700-01
Chr05	irgsp1_rep	three_prime_UTR	568790	569095	.	-	.	Parent=Os05t0110700-01
Chr05	irgsp1_rep	mRNA	575028	576861	.	+	.	ID=Os05t0110800-01;Name=Os05t0110800-01;Locus_id=Os05g0110800;Note=Conserved hypothetical protein.;Transcript_evidence=AK067749 (DDBJ%2C Best hit);ORF_evidence=Q94HI8 (UniProt);NIAS_FLcDNA=J013118J08;TENOR=Os05t0110800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	575028	575028	.	+	.	Parent=Os05t0110800-01
Chr05	irgsp1_rep	CDS	575029	575079	.	+	0	Parent=Os05t0110800-01
Chr05	irgsp1_rep	CDS	575319	575381	.	+	0	Parent=Os05t0110800-01
Chr05	irgsp1_rep	CDS	575508	575594	.	+	0	Parent=Os05t0110800-01
Chr05	irgsp1_rep	CDS	575702	575803	.	+	0	Parent=Os05t0110800-01
Chr05	irgsp1_rep	three_prime_UTR	575804	575941	.	+	.	Parent=Os05t0110800-01
Chr05	irgsp1_rep	three_prime_UTR	576066	576139	.	+	.	Parent=Os05t0110800-01
Chr05	irgsp1_rep	three_prime_UTR	576236	576334	.	+	.	Parent=Os05t0110800-01
Chr05	irgsp1_rep	three_prime_UTR	576527	576861	.	+	.	Parent=Os05t0110800-01
Chr05	irgsp1_rep	mRNA	575841	576845	.	+	.	ID=Os05t0110800-02;Name=Os05t0110800-02;Locus_id=Os05g0110800;Note=Similar to predicted protein.;Transcript_evidence=AK104935 (DDBJ%2C Best hit);ORF_evidence=Q94HI8 (UniProt);NIAS_FLcDNA=001-105-A08;Expression=AK104935;TENOR=Os05t0110800-02;KEGG=Os05t0110800-02
Chr05	irgsp1_rep	five_prime_UTR	575841	575841	.	+	.	Parent=Os05t0110800-02
Chr05	irgsp1_rep	CDS	575842	575941	.	+	0	Parent=Os05t0110800-02
Chr05	irgsp1_rep	CDS	576066	576139	.	+	2	Parent=Os05t0110800-02
Chr05	irgsp1_rep	CDS	576236	576334	.	+	0	Parent=Os05t0110800-02
Chr05	irgsp1_rep	CDS	576527	576622	.	+	0	Parent=Os05t0110800-02
Chr05	irgsp1_rep	three_prime_UTR	576623	576845	.	+	.	Parent=Os05t0110800-02
Chr05	irgsp1_rep	mRNA	577182	580396	.	-	.	ID=Os05t0110900-01;Name=Os05t0110900-01;Locus_id=Os05g0110900;RAP-DB Gene Symbol Synonym(s)=OsRLCK176;RAP-DB Gene Name Synonym(s)=receptor-like cytoplasmic kinase 176;CGSNL Gene Symbol=RLCK176;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 176;Oryzabase Gene Symbol Synonym(s)=OsRLCK176;Oryzabase Gene Name Synonym(s)=receptor-like cytoplasmic kinase 176;Note=Receptor-like cytoplasmic kinase%2C Positive regulation of peptidoglycan and chitin triggered immunity;Transcript_evidence=AK073169;ORF_evidence=Q65XV8;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),Protein kinase domain (IPR000719),Serine-threonine/tyrosine-protein kinase%2C catalytic domain (IPR001245),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J033020B11;Manual Curation=February 9%2C 2018;Literature_PMID=29242377,25335639;Oryzabase=18666;Expression=AK073169;TENOR=Os05t0110900-01;KEGG=Os05t0110900-01 (EC:2.7.11.1)
Chr05	irgsp1_rep	five_prime_UTR	579846	580396	.	-	.	Parent=Os05t0110900-01
Chr05	irgsp1_rep	CDS	579779	579845	.	-	0	Parent=Os05t0110900-01
Chr05	irgsp1_rep	CDS	578749	579047	.	-	2	Parent=Os05t0110900-01
Chr05	irgsp1_rep	CDS	578537	578672	.	-	0	Parent=Os05t0110900-01
Chr05	irgsp1_rep	CDS	578305	578447	.	-	2	Parent=Os05t0110900-01
Chr05	irgsp1_rep	CDS	578100	578223	.	-	0	Parent=Os05t0110900-01
Chr05	irgsp1_rep	CDS	577479	577897	.	-	2	Parent=Os05t0110900-01
Chr05	irgsp1_rep	three_prime_UTR	577182	577478	.	-	.	Parent=Os05t0110900-01
Chr05	irgsp1_rep	mRNA	577621	578943	.	+	.	ID=Os05t0110925-00;Name=Os05t0110925-00;Locus_id=Os05g0110925;Note=Hypothetical protein.;Transcript_evidence=tplb0027d05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0110925-00
Chr05	irgsp1_rep	five_prime_UTR	577621	577622	.	+	.	Parent=Os05t0110925-00
Chr05	irgsp1_rep	CDS	577623	577838	.	+	0	Parent=Os05t0110925-00
Chr05	irgsp1_rep	three_prime_UTR	577839	577918	.	+	.	Parent=Os05t0110925-00
Chr05	irgsp1_rep	three_prime_UTR	578124	578220	.	+	.	Parent=Os05t0110925-00
Chr05	irgsp1_rep	three_prime_UTR	578295	578415	.	+	.	Parent=Os05t0110925-00
Chr05	irgsp1_rep	three_prime_UTR	578517	578650	.	+	.	Parent=Os05t0110925-00
Chr05	irgsp1_rep	three_prime_UTR	578728	578943	.	+	.	Parent=Os05t0110925-00
Chr05	irgsp1_rep	mRNA	593356	597828	.	+	.	ID=Os05t0111000-01;Name=Os05t0111000-01;Locus_id=Os05g0111000;CGSNL Gene Symbol=RPA1C;CGSNL Gene Name=REPLICATION PROTEIN A 1C;Oryzabase Gene Symbol Synonym(s)=RPA1c%2C OsRPA1c;Oryzabase Gene Name Synonym(s)=Replication Protein A1c;Note=Similar to Gag polyprotein [Contains: Core protein p15 (Matrix protein)%3B Core protein p24%3B Core protein p12].;Transcript_evidence=AK073598 (DDBJ%2C Best hit);ORF_evidence=NP_001151792.1 (RefSeq);GO=Biological Process: DNA replication (GO:0006260),Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Nucleic acid binding%2C OB-fold%2C tRNA/helicase-type (IPR004365),Replication factor-a protein 1 Rpa1 (IPR004591),Replication factor-A protein 1%2C N-terminal (IPR007199),Nucleic acid-binding%2C OB-fold (IPR012340),Zinc finger%2C CCHC retroviral-type (IPR013084),Replication factor A%2C C-terminal (IPR013955),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=J033047G19;Oryzabase=15026;Expression=AK073598;TENOR=Os05t0111000-01;KEGG=Os05t0111000-01
Chr05	irgsp1_rep	five_prime_UTR	593356	593463	.	+	.	Parent=Os05t0111000-01
Chr05	irgsp1_rep	CDS	593464	593756	.	+	0	Parent=Os05t0111000-01
Chr05	irgsp1_rep	CDS	595061	597623	.	+	1	Parent=Os05t0111000-01
Chr05	irgsp1_rep	three_prime_UTR	597624	597828	.	+	.	Parent=Os05t0111000-01
Chr05	irgsp1_rep	mRNA	599130	599776	.	-	.	ID=Os05t0111100-01;Name=Os05t0111100-01;Locus_id=Os05g0111100;Note=Zinc finger%2C Tim10/DDP-type family protein.;Transcript_evidence=AK241342 (DDBJ%2C Best hit);ORF_evidence=A6MZE3 (UniProt);GO=Biological Process: protein targeting to mitochondrion (GO:0006626),Biological Process: protein import into mitochondrial inner membrane (GO:0045039),Cellular Component: mitochondrial intermembrane space protein transporter complex (GO:0042719);InterPro=Mitochondrial inner membrane translocase complex%2C Tim8/9/10/13-zinc finger-like (IPR004217);NIAS_FLcDNA=J065147F17;TENOR=Os05t0111100-01;KEGG=Os05t0111100-01
Chr05	irgsp1_rep	five_prime_UTR	599729	599776	.	-	.	Parent=Os05t0111100-01
Chr05	irgsp1_rep	CDS	599631	599728	.	-	0	Parent=Os05t0111100-01
Chr05	irgsp1_rep	CDS	599360	599549	.	-	1	Parent=Os05t0111100-01
Chr05	irgsp1_rep	three_prime_UTR	599130	599359	.	-	.	Parent=Os05t0111100-01
Chr05	irgsp1_rep	mRNA	600341	603186	.	+	.	ID=Os05t0111200-01;Name=Os05t0111200-01;Locus_id=Os05g0111200;Note=Similar to Amino acid selective channel protein.;Transcript_evidence=AK101693 (DDBJ%2C Best hit);ORF_evidence=B3VTB6 (UniProt);InterPro=Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 (IPR003397);NIAS_FLcDNA=J033059M19;Expression=AK101693;TENOR=Os05t0111200-01;KEGG=Os05t0111200-01
Chr05	irgsp1_rep	five_prime_UTR	600341	600421	.	+	.	Parent=Os05t0111200-01
Chr05	irgsp1_rep	CDS	600422	600535	.	+	0	Parent=Os05t0111200-01
Chr05	irgsp1_rep	CDS	600630	600681	.	+	0	Parent=Os05t0111200-01
Chr05	irgsp1_rep	CDS	601371	601402	.	+	2	Parent=Os05t0111200-01
Chr05	irgsp1_rep	CDS	601855	601888	.	+	0	Parent=Os05t0111200-01
Chr05	irgsp1_rep	CDS	602025	602092	.	+	2	Parent=Os05t0111200-01
Chr05	irgsp1_rep	CDS	602872	603012	.	+	0	Parent=Os05t0111200-01
Chr05	irgsp1_rep	three_prime_UTR	603013	603186	.	+	.	Parent=Os05t0111200-01
Chr05	irgsp1_rep	mRNA	605868	606764	.	+	.	ID=Os05t0111300-01;Name=Os05t0111300-01;Locus_id=Os05g0111300;RAP-DB Gene Symbol Synonym(s)=OsMT2b;RAP-DB Gene Name Synonym(s)=METALLOTHIONEIN2b;CGSNL Gene Symbol=MT2B;CGSNL Gene Name=METALLOTHIONEIN2B;Oryzabase Gene Symbol Synonym(s)=OsMT2b%2C MT2b%2C OsMT-I-2c%2C MT-I-2c%2C MT2C%2C MT2BL%2C OsMT2C%2C OsMT2BL%2C MTE%2C OsMT2b1%2C OsMT2b2%2C MT2b1%2C MT2b2%2C MTb%2C met1%2C OsMTe%2C OsMT-I-2c%2C OsB22EL8%2C MTe%2C MT-I-2c%2C B22EL8;Oryzabase Gene Name Synonym(s)=METALLOTHIONEIN2b%2C Metallothionein-like protein 2C%2C Class I metallothionein-like protein 2C%2C type 2 metallothionein b1%2C type 2 metallothionein b2%2C metallothionein 1;Note=Metallothionein%2C Reactive oxygen species (ROS) scavenger protein%2C Root development and seed embryo germination%2C Distribution of Zn to grain;Transcript_evidence=AK119630,AK058529,AK119721;ORF_evidence=A3AZ88;GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Metallothionein%2C family 15%2C plant (IPR000347);NIAS_FLcDNA=002-130-C04,001-017-A05,002-157-G09;Manual Curation=August 17%2C 2020;Literature_PMID=32772382,31004187,18258694,15220467;Oryzabase=6226;TENOR=Os05t0111300-01;Subcellular location=cytosol (GO:0005829),nucleus (GO:0005634)
Chr05	irgsp1_rep	five_prime_UTR	605868	605967	.	+	.	Parent=Os05t0111300-01
Chr05	irgsp1_rep	CDS	605968	606032	.	+	0	Parent=Os05t0111300-01
Chr05	irgsp1_rep	CDS	606142	606216	.	+	1	Parent=Os05t0111300-01
Chr05	irgsp1_rep	CDS	606332	606446	.	+	1	Parent=Os05t0111300-01
Chr05	irgsp1_rep	three_prime_UTR	606447	606764	.	+	.	Parent=Os05t0111300-01
Chr05	irgsp1_rep	mRNA	605871	606742	.	+	.	ID=Os05t0111300-02;Name=Os05t0111300-02;Locus_id=Os05g0111300;CGSNL Gene Symbol=MT2B;CGSNL Gene Name=METALLOTHIONEIN2B;Oryzabase Gene Symbol Synonym(s)=OsMT2b%2C MT2b%2C OsMT-I-2c%2C MT-I-2c%2C MT2C%2C MT2BL%2C OsMT2C%2C OsMT2BL%2C MTE%2C OsMT2b1%2C OsMT2b2%2C MT2b1%2C MT2b2%2C MTb%2C met1%2C OsMTe%2C OsMT-I-2c%2C OsB22EL8%2C MTe%2C MT-I-2c%2C B22EL8;Oryzabase Gene Name Synonym(s)=METALLOTHIONEIN2b%2C Metallothionein-like protein 2C%2C Class I metallothionein-like protein 2C%2C type 2 metallothionein b1%2C type 2 metallothionein b2%2C metallothionein 1;Note=Similar to Metallothionein.;Transcript_evidence=AK119241 (DDBJ%2C Best hit);ORF_evidence=Q60GS7 (UniProt);GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Metallothionein%2C family 15%2C plant (IPR000347);NIAS_FLcDNA=001-120-A08;Oryzabase=6226;Expression=AK119241;TENOR=Os05t0111300-02;KEGG=Os05t0111300-02
Chr05	irgsp1_rep	five_prime_UTR	605871	605967	.	+	.	Parent=Os05t0111300-02
Chr05	irgsp1_rep	CDS	605968	606032	.	+	0	Parent=Os05t0111300-02
Chr05	irgsp1_rep	CDS	606142	606217	.	+	1	Parent=Os05t0111300-02
Chr05	irgsp1_rep	CDS	606423	606446	.	+	0	Parent=Os05t0111300-02
Chr05	irgsp1_rep	three_prime_UTR	606447	606742	.	+	.	Parent=Os05t0111300-02
Chr05	irgsp1_rep	mRNA	629508	632454	.	+	.	ID=Os05t0111800-00;Name=Os05t0111800-00;Locus_id=Os05g0111800;Oryzabase Gene Symbol Synonym(s)=OsPP2C46%2C PP2C46%2C OsPP71;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C46%2C protein phosphatase 2C 46%2C protein phosphatase 71;Note=Similar to Protein phosphatase type 2C.;Transcript_evidence=AK367753 (DDBJ);ORF_evidence=B3VTB3 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);Oryzabase=17920;TENOR=Os05t0111800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	629508	630788	.	+	0	Parent=Os05t0111800-00
Chr05	irgsp1_rep	CDS	630853	630942	.	+	0	Parent=Os05t0111800-00
Chr05	irgsp1_rep	CDS	631229	631342	.	+	0	Parent=Os05t0111800-00
Chr05	irgsp1_rep	CDS	631531	631795	.	+	0	Parent=Os05t0111800-00
Chr05	irgsp1_rep	CDS	632339	632454	.	+	2	Parent=Os05t0111800-00
Chr05	irgsp1_rep	mRNA	633900	638779	.	+	.	ID=Os05t0111900-01;Name=Os05t0111900-01;Locus_id=Os05g0111900;Note=Similar to Pectinacetylesterase precursor.;Transcript_evidence=AK068437 (DDBJ%2C Best hit);ORF_evidence=B3VTB2 (UniProt);InterPro=Pectinacetylesterase (IPR004963);NIAS_FLcDNA=J013156H21;Expression=AK068437;TENOR=Os05t0111900-01;KEGG=Os05t0111900-01
Chr05	irgsp1_rep	five_prime_UTR	633900	633900	.	+	.	Parent=Os05t0111900-01
Chr05	irgsp1_rep	CDS	633901	634066	.	+	0	Parent=Os05t0111900-01
Chr05	irgsp1_rep	CDS	634164	634246	.	+	2	Parent=Os05t0111900-01
Chr05	irgsp1_rep	CDS	634776	634905	.	+	0	Parent=Os05t0111900-01
Chr05	irgsp1_rep	CDS	635533	635612	.	+	2	Parent=Os05t0111900-01
Chr05	irgsp1_rep	CDS	635698	635787	.	+	0	Parent=Os05t0111900-01
Chr05	irgsp1_rep	CDS	636357	636419	.	+	0	Parent=Os05t0111900-01
Chr05	irgsp1_rep	three_prime_UTR	636420	636488	.	+	.	Parent=Os05t0111900-01
Chr05	irgsp1_rep	three_prime_UTR	637047	637107	.	+	.	Parent=Os05t0111900-01
Chr05	irgsp1_rep	three_prime_UTR	637184	637234	.	+	.	Parent=Os05t0111900-01
Chr05	irgsp1_rep	three_prime_UTR	637321	637398	.	+	.	Parent=Os05t0111900-01
Chr05	irgsp1_rep	three_prime_UTR	637481	637586	.	+	.	Parent=Os05t0111900-01
Chr05	irgsp1_rep	three_prime_UTR	637678	638779	.	+	.	Parent=Os05t0111900-01
Chr05	irgsp1_rep	mRNA	640321	643316	.	-	.	ID=Os05t0112000-01;Name=Os05t0112000-01;Locus_id=Os05g0112000;RAP-DB Gene Symbol Synonym(s)=XB3%2C Xb3;RAP-DB Gene Name Synonym(s)=XA21 BINDING PROTEIN 3%2C Xa21-binding protein 3%2C receptor-like kinase Xa21-binding protein 3;CGSNL Gene Symbol=XB3;CGSNL Gene Name=XA21 BINDING PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=Xb3;Oryzabase Gene Name Synonym(s)=Xa21-binding protein 3%2C receptor-like kinase Xa21-binding protein 3;Note=E3 ubiquitin ligase%2C XA21-mediated disease resistance;Transcript_evidence=AF272860 (Genbank),AK107650 (Genbank),AK105623 (Genbank),AK102800 (Genbank);ORF_evidence=Q65XV2 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Ankyrin repeat (IPR002110),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J033108E06,001-200-C08,002-131-F11;Manual Curation=August 18%2C 2009;Literature_PMID=17172358;Oryzabase=7495;Expression=AK102800;TENOR=Os05t0112000-01;KEGG=Os05t0112000-01
Chr05	irgsp1_rep	five_prime_UTR	643220	643316	.	-	.	Parent=Os05t0112000-01
Chr05	irgsp1_rep	CDS	643037	643219	.	-	0	Parent=Os05t0112000-01
Chr05	irgsp1_rep	CDS	642876	642935	.	-	0	Parent=Os05t0112000-01
Chr05	irgsp1_rep	CDS	642640	642711	.	-	0	Parent=Os05t0112000-01
Chr05	irgsp1_rep	CDS	642428	642549	.	-	0	Parent=Os05t0112000-01
Chr05	irgsp1_rep	CDS	642190	642330	.	-	1	Parent=Os05t0112000-01
Chr05	irgsp1_rep	CDS	641969	642076	.	-	1	Parent=Os05t0112000-01
Chr05	irgsp1_rep	CDS	641412	641673	.	-	1	Parent=Os05t0112000-01
Chr05	irgsp1_rep	CDS	640882	641286	.	-	0	Parent=Os05t0112000-01
Chr05	irgsp1_rep	three_prime_UTR	640321	640881	.	-	.	Parent=Os05t0112000-01
Chr05	irgsp1_rep	mRNA	640452	643217	.	-	.	ID=Os05t0112000-04;Name=Os05t0112000-04;Locus_id=Os05g0112000;CGSNL Gene Symbol=XB3;CGSNL Gene Name=XA21 BINDING PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=Xb3;Oryzabase Gene Name Synonym(s)=Xa21-binding protein 3%2C receptor-like kinase Xa21-binding protein 3;Note=Similar to Receptor-like kinase Xa21-binding protein 3.;Transcript_evidence=AK105930 (DDBJ%2C Best hit);ORF_evidence=Q65XV2 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Ankyrin repeat (IPR002110),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=001-205-B01;Oryzabase=7495;Expression=AK105930;TENOR=Os05t0112000-04;KEGG=Os05t0112000-04
Chr05	irgsp1_rep	five_prime_UTR	643217	643217	.	-	.	Parent=Os05t0112000-04
Chr05	irgsp1_rep	CDS	643037	643216	.	-	0	Parent=Os05t0112000-04
Chr05	irgsp1_rep	CDS	642876	642935	.	-	0	Parent=Os05t0112000-04
Chr05	irgsp1_rep	CDS	642640	642711	.	-	0	Parent=Os05t0112000-04
Chr05	irgsp1_rep	CDS	642428	642549	.	-	0	Parent=Os05t0112000-04
Chr05	irgsp1_rep	CDS	642190	642330	.	-	1	Parent=Os05t0112000-04
Chr05	irgsp1_rep	CDS	641969	642076	.	-	1	Parent=Os05t0112000-04
Chr05	irgsp1_rep	CDS	641412	641673	.	-	1	Parent=Os05t0112000-04
Chr05	irgsp1_rep	CDS	640882	641286	.	-	0	Parent=Os05t0112000-04
Chr05	irgsp1_rep	three_prime_UTR	640452	640881	.	-	.	Parent=Os05t0112000-04
Chr05	irgsp1_rep	mRNA	640451	642549	.	-	.	ID=Os05t0112000-05;Name=Os05t0112000-05;Locus_id=Os05g0112000;CGSNL Gene Symbol=XB3;CGSNL Gene Name=XA21 BINDING PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=Xb3;Oryzabase Gene Name Synonym(s)=Xa21-binding protein 3%2C receptor-like kinase Xa21-binding protein 3;Note=Similar to Receptor-like kinase Xa21-binding protein 3.;Transcript_evidence=AK059322 (DDBJ%2C Best hit);ORF_evidence=Q65XV2 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Ankyrin repeat (IPR002110),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=001-025-H09;Oryzabase=7495;Expression=AK059322;TENOR=Os05t0112000-05;KEGG=Os05t0112000-05
Chr05	irgsp1_rep	CDS	642428	642549	.	-	0	Parent=Os05t0112000-05
Chr05	irgsp1_rep	CDS	642190	642330	.	-	1	Parent=Os05t0112000-05
Chr05	irgsp1_rep	CDS	641969	642076	.	-	1	Parent=Os05t0112000-05
Chr05	irgsp1_rep	CDS	641412	641673	.	-	1	Parent=Os05t0112000-05
Chr05	irgsp1_rep	CDS	640882	641286	.	-	0	Parent=Os05t0112000-05
Chr05	irgsp1_rep	three_prime_UTR	640451	640881	.	-	.	Parent=Os05t0112000-05
Chr05	irgsp1_rep	mRNA	643035	643225	.	+	.	ID=Os05t0112050-00;Name=Os05t0112050-00;Locus_id=Os05g0112050;Note=Non-protein coding transcript.;Transcript_evidence=EU948346 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0112050-00
Chr05	irgsp1_rep	exon	643035	643225	.	+	.	Parent=Os05t0112050-00
Chr05	irgsp1_rep	mRNA	648654	650677	.	-	.	ID=Os05t0112101-01;Name=Os05t0112101-01;Locus_id=Os05g0112101;Note=Epsin-like%2C N-terminal domain containing protein.;Transcript_evidence=AK241311 (DDBJ%2C Best hit);ORF_evidence=NP_567892.1 (RefSeq);GO=Biological Process: clathrin coat assembly (GO:0048268),Cellular Component: clathrin coat (GO:0030118),Molecular Function: phospholipid binding (GO:0005543),Molecular Function: 1-phosphatidylinositol binding (GO:0005545),Molecular Function: clathrin binding (GO:0030276);InterPro=ENTH/VHS (IPR008942),ANTH (IPR011417),Epsin-like%2C N-terminal (IPR013809),Clathrin adaptor%2C phosphoinositide-binding%2C GAT-like (IPR014712);NIAS_FLcDNA=J065141G20;TENOR=Os05t0112101-01;KEGG=Os05t0112101-01
Chr05	irgsp1_rep	five_prime_UTR	650606	650677	.	-	.	Parent=Os05t0112101-01
Chr05	irgsp1_rep	CDS	648860	650605	.	-	0	Parent=Os05t0112101-01
Chr05	irgsp1_rep	three_prime_UTR	648654	648859	.	-	.	Parent=Os05t0112101-01
Chr05	irgsp1_rep	mRNA	648904	650860	.	+	.	ID=Os05t0112125-00;Name=Os05t0112125-00;Locus_id=Os05g0112125;Note=Hypothetical protein.;Transcript_evidence=AK356307 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0112125-00
Chr05	irgsp1_rep	five_prime_UTR	648904	649564	.	+	.	Parent=Os05t0112125-00
Chr05	irgsp1_rep	CDS	649565	650686	.	+	0	Parent=Os05t0112125-00
Chr05	irgsp1_rep	three_prime_UTR	650687	650860	.	+	.	Parent=Os05t0112125-00
Chr05	irgsp1_rep	mRNA	658112	660002	.	-	.	ID=Os05t0112200-01;Name=Os05t0112200-01;Locus_id=Os05g0112200;CGSNL Gene Symbol=DOF19;CGSNL Gene Name=DNA BINDING WITH ONE FINGER 19;Oryzabase Gene Symbol Synonym(s)=OsDof19%2C Dof19%2C OsDof-19;Oryzabase Gene Name Synonym(s)=Dof zinc factor 19%2C Dof transcription factor 19;Note=Similar to Zn finger protein (Fragment).;Transcript_evidence=AK108933 (DDBJ%2C Best hit);ORF_evidence=Q41801 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C Dof-type (IPR003851);NIAS_FLcDNA=002-153-A09;Oryzabase=8809;Expression=AK108933;TENOR=Os05t0112200-01;KEGG=Os05t0112200-01
Chr05	irgsp1_rep	five_prime_UTR	659954	660002	.	-	.	Parent=Os05t0112200-01
Chr05	irgsp1_rep	five_prime_UTR	659477	659581	.	-	.	Parent=Os05t0112200-01
Chr05	irgsp1_rep	CDS	658604	659476	.	-	0	Parent=Os05t0112200-01
Chr05	irgsp1_rep	three_prime_UTR	658112	658603	.	-	.	Parent=Os05t0112200-01
Chr05	irgsp1_rep	mRNA	687860	690346	.	-	.	ID=Os05t0112750-01;Name=Os05t0112750-01;Locus_id=Os05g0112750;Note=Phosphatidylinositol transfer protein-like%2C N-terminal domain containing protein.;Transcript_evidence=AK241115 (DDBJ%2C Best hit);ORF_evidence=XP_002871206.1 (RefSeq);NIAS_FLcDNA=J065093C22;TENOR=Os05t0112750-01;KEGG=Os05t0112750-01
Chr05	irgsp1_rep	five_prime_UTR	690300	690346	.	-	.	Parent=Os05t0112750-01
Chr05	irgsp1_rep	five_prime_UTR	690036	690136	.	-	.	Parent=Os05t0112750-01
Chr05	irgsp1_rep	five_prime_UTR	688662	688709	.	-	.	Parent=Os05t0112750-01
Chr05	irgsp1_rep	CDS	688158	688661	.	-	0	Parent=Os05t0112750-01
Chr05	irgsp1_rep	three_prime_UTR	687860	688157	.	-	.	Parent=Os05t0112750-01
Chr05	irgsp1_rep	mRNA	690765	691772	.	-	.	ID=Os05t0112800-01;Name=Os05t0112800-01;Locus_id=Os05g0112800;Note=Protein of unknown function DUF26 domain containing protein.;Transcript_evidence=AK108350 (DDBJ%2C Best hit);ORF_evidence=NP_001147502.1 (RefSeq);InterPro=Gnk2-homologous domain (IPR002902);NIAS_FLcDNA=002-142-B11;Expression=AK108350;TENOR=Os05t0112800-01;KEGG=Os05t0112800-01
Chr05	irgsp1_rep	five_prime_UTR	691734	691772	.	-	.	Parent=Os05t0112800-01
Chr05	irgsp1_rep	CDS	690915	691733	.	-	0	Parent=Os05t0112800-01
Chr05	irgsp1_rep	three_prime_UTR	690765	690914	.	-	.	Parent=Os05t0112800-01
Chr05	irgsp1_rep	mRNA	694205	696908	.	+	.	ID=Os05t0112900-01;Name=Os05t0112900-01;Locus_id=Os05g0112900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK103016 (DDBJ%2C Best hit);ORF_evidence=A2XZM3 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033116M22;Expression=AK103016;TENOR=Os05t0112900-01;KEGG=Os05t0112900-01
Chr05	irgsp1_rep	five_prime_UTR	694205	694388	.	+	.	Parent=Os05t0112900-01
Chr05	irgsp1_rep	CDS	694389	696374	.	+	0	Parent=Os05t0112900-01
Chr05	irgsp1_rep	three_prime_UTR	696375	696908	.	+	.	Parent=Os05t0112900-01
Chr05	irgsp1_rep	mRNA	694205	698938	.	+	.	ID=Os05t0112900-02;Name=Os05t0112900-02;Locus_id=Os05g0112900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK101509 (DDBJ%2C Best hit);ORF_evidence=A2XZM3 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033045G01;Expression=AK101509;TENOR=Os05t0112900-02;KEGG=Os05t0112900-02
Chr05	irgsp1_rep	five_prime_UTR	694205	694388	.	+	.	Parent=Os05t0112900-02
Chr05	irgsp1_rep	CDS	694389	696374	.	+	0	Parent=Os05t0112900-02
Chr05	irgsp1_rep	three_prime_UTR	696375	696916	.	+	.	Parent=Os05t0112900-02
Chr05	irgsp1_rep	three_prime_UTR	697599	697700	.	+	.	Parent=Os05t0112900-02
Chr05	irgsp1_rep	three_prime_UTR	697782	697908	.	+	.	Parent=Os05t0112900-02
Chr05	irgsp1_rep	three_prime_UTR	698249	698580	.	+	.	Parent=Os05t0112900-02
Chr05	irgsp1_rep	three_prime_UTR	698745	698938	.	+	.	Parent=Os05t0112900-02
Chr05	irgsp1_rep	mRNA	701583	705308	.	+	.	ID=Os05t0113000-01;Name=Os05t0113000-01;Locus_id=Os05g0113000;Note=Amino acid-binding ACT domain containing protein.;Transcript_evidence=AK067079 (DDBJ%2C Best hit);ORF_evidence=B6TDN9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: amino acid binding (GO:0016597);InterPro=Amino acid-binding ACT (IPR002912);NIAS_FLcDNA=J013095H10;Expression=AK067079;TENOR=Os05t0113000-01;KEGG=Os05t0113000-01
Chr05	irgsp1_rep	five_prime_UTR	701583	701641	.	+	.	Parent=Os05t0113000-01
Chr05	irgsp1_rep	CDS	701642	701870	.	+	0	Parent=Os05t0113000-01
Chr05	irgsp1_rep	CDS	702686	702904	.	+	2	Parent=Os05t0113000-01
Chr05	irgsp1_rep	CDS	702998	703103	.	+	2	Parent=Os05t0113000-01
Chr05	irgsp1_rep	CDS	703235	703574	.	+	1	Parent=Os05t0113000-01
Chr05	irgsp1_rep	CDS	703900	704382	.	+	0	Parent=Os05t0113000-01
Chr05	irgsp1_rep	three_prime_UTR	704383	705308	.	+	.	Parent=Os05t0113000-01
Chr05	irgsp1_rep	mRNA	703322	704839	.	+	.	ID=Os05t0113000-02;Name=Os05t0113000-02;Locus_id=Os05g0113000;Note=Similar to Amino acid binding protein.;Transcript_evidence=AK059086 (DDBJ%2C Best hit);ORF_evidence=B6TDN9 (UniProt);NIAS_FLcDNA=001-022-B04;Expression=AK059086;TENOR=Os05t0113000-02;KEGG=Os05t0113000-02
Chr05	irgsp1_rep	five_prime_UTR	703322	703322	.	+	.	Parent=Os05t0113000-02
Chr05	irgsp1_rep	CDS	703323	703574	.	+	0	Parent=Os05t0113000-02
Chr05	irgsp1_rep	CDS	703900	704184	.	+	0	Parent=Os05t0113000-02
Chr05	irgsp1_rep	CDS	704256	704411	.	+	0	Parent=Os05t0113000-02
Chr05	irgsp1_rep	three_prime_UTR	704412	704839	.	+	.	Parent=Os05t0113000-02
Chr05	irgsp1_rep	mRNA	707050	707859	.	+	.	ID=Os05t0113100-01;Name=Os05t0113100-01;Locus_id=Os05g0113100;Note=Conserved hypothetical protein.;Transcript_evidence=AK110680 (DDBJ%2C Best hit);ORF_evidence=NP_001044204.1 (RefSeq);NIAS_FLcDNA=002-169-H03;TENOR=Os05t0113100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	707050	707050	.	+	.	Parent=Os05t0113100-01
Chr05	irgsp1_rep	CDS	707051	707611	.	+	0	Parent=Os05t0113100-01
Chr05	irgsp1_rep	three_prime_UTR	707612	707859	.	+	.	Parent=Os05t0113100-01
Chr05	irgsp1_rep	mRNA	711549	715894	.	+	.	ID=Os05t0113300-01;Name=Os05t0113300-01;Locus_id=Os05g0113300;CGSNL Gene Symbol=CHX12;CGSNL Gene Name=CATION/H+ EXCHANGER  12;Oryzabase Gene Symbol Synonym(s)=OsCHX12;Oryzabase Gene Name Synonym(s)=cation/H+ exchanger  12;Note=Cation/H+ exchanger domain containing protein.;Transcript_evidence=AK106443 (DDBJ%2C Best hit);ORF_evidence=XP_002877937.1 (RefSeq);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: solute:hydrogen antiporter activity (GO:0015299);InterPro=Cation/H+ exchanger (IPR006153),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=002-103-D12;Oryzabase=22371;Expression=AK106443;TENOR=Os05t0113300-01;KEGG=Os05t0113300-01
Chr05	irgsp1_rep	five_prime_UTR	711549	711663	.	+	.	Parent=Os05t0113300-01
Chr05	irgsp1_rep	CDS	711664	712875	.	+	0	Parent=Os05t0113300-01
Chr05	irgsp1_rep	CDS	714357	715295	.	+	0	Parent=Os05t0113300-01
Chr05	irgsp1_rep	CDS	715378	715761	.	+	0	Parent=Os05t0113300-01
Chr05	irgsp1_rep	three_prime_UTR	715762	715894	.	+	.	Parent=Os05t0113300-01
Chr05	irgsp1_rep	mRNA	716295	718798	.	+	.	ID=Os05t0113400-01;Name=Os05t0113400-01;Locus_id=Os05g0113400;CGSNL Gene Symbol=ADF7;CGSNL Gene Name=ACTIN DEPOLYMERIZING FACTOR 7;Oryzabase Gene Symbol Synonym(s)=OsADF7;Oryzabase Gene Name Synonym(s)=actin depolymerizing factor 7;Note=Similar to Actin-depolymerizing factor 2 (ADF 2).;Transcript_evidence=AK102177 (DDBJ%2C Best hit);ORF_evidence=Q0DLA3 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: actin binding (GO:0003779);InterPro=Actin-binding%2C cofilin/tropomyosin type (IPR002108);NIAS_FLcDNA=J033086L12;Oryzabase=12506;Expression=AK102177;TENOR=Os05t0113400-01;KEGG=Os05t0113400-01
Chr05	irgsp1_rep	five_prime_UTR	716295	718096	.	+	.	Parent=Os05t0113400-01
Chr05	irgsp1_rep	CDS	718097	718362	.	+	0	Parent=Os05t0113400-01
Chr05	irgsp1_rep	CDS	718465	718615	.	+	1	Parent=Os05t0113400-01
Chr05	irgsp1_rep	three_prime_UTR	718616	718798	.	+	.	Parent=Os05t0113400-01
Chr05	irgsp1_rep	mRNA	719134	721868	.	-	.	ID=Os05t0113500-03;Name=Os05t0113500-03;Locus_id=Os05g0113500;Oryzabase Gene Symbol Synonym(s)=BIP130;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 130%2C BRI1-interacting protein 130%2C brassinosteroid receptor kinase-interacting protein 130;Note=Similar to BRI1-KD interacting protein 130.;Transcript_evidence=AK120850 (DDBJ%2C Best hit);ORF_evidence=Q761Y4 (UniProt);NIAS_FLcDNA=J023023G21;Oryzabase=13704;Expression=AK120850;TENOR=Os05t0113500-03;KEGG=Os05t0113500-03
Chr05	irgsp1_rep	five_prime_UTR	721231	721868	.	-	.	Parent=Os05t0113500-03
Chr05	irgsp1_rep	CDS	720889	721230	.	-	0	Parent=Os05t0113500-03
Chr05	irgsp1_rep	CDS	719655	719926	.	-	0	Parent=Os05t0113500-03
Chr05	irgsp1_rep	CDS	719398	719566	.	-	1	Parent=Os05t0113500-03
Chr05	irgsp1_rep	three_prime_UTR	719134	719397	.	-	.	Parent=Os05t0113500-03
Chr05	irgsp1_rep	mRNA	719167	721868	.	-	.	ID=Os05t0113500-04;Name=Os05t0113500-04;Locus_id=Os05g0113500;Oryzabase Gene Symbol Synonym(s)=BIP130;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 130%2C BRI1-interacting protein 130%2C brassinosteroid receptor kinase-interacting protein 130;Note=Similar to BRI1-KD interacting protein 130.;Transcript_evidence=AK065006 (DDBJ%2C Best hit),AK072323 (DDBJ%2C Best hit);ORF_evidence=Q761Y4 (UniProt);NIAS_FLcDNA=J013001E14,J023029D02;Oryzabase=13704;TENOR=Os05t0113500-04
Chr05	irgsp1_rep	five_prime_UTR	721231	721868	.	-	.	Parent=Os05t0113500-04
Chr05	irgsp1_rep	CDS	720889	721230	.	-	0	Parent=Os05t0113500-04
Chr05	irgsp1_rep	CDS	719655	719926	.	-	0	Parent=Os05t0113500-04
Chr05	irgsp1_rep	CDS	719398	719578	.	-	1	Parent=Os05t0113500-04
Chr05	irgsp1_rep	three_prime_UTR	719167	719397	.	-	.	Parent=Os05t0113500-04
Chr05	irgsp1_rep	mRNA	719167	721340	.	-	.	ID=Os05t0113500-05;Name=Os05t0113500-05;Locus_id=Os05g0113500;Oryzabase Gene Symbol Synonym(s)=BIP130;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 130%2C BRI1-interacting protein 130%2C brassinosteroid receptor kinase-interacting protein 130;Note=Similar to BRI1-KD interacting protein 130.;Transcript_evidence=AK061727 (DDBJ%2C Best hit);ORF_evidence=Q761Y4 (UniProt);NIAS_FLcDNA=001-038-B07;Oryzabase=13704;TENOR=Os05t0113500-05
Chr05	irgsp1_rep	five_prime_UTR	721231	721340	.	-	.	Parent=Os05t0113500-05
Chr05	irgsp1_rep	CDS	720889	721230	.	-	0	Parent=Os05t0113500-05
Chr05	irgsp1_rep	CDS	719655	719926	.	-	0	Parent=Os05t0113500-05
Chr05	irgsp1_rep	CDS	719398	719578	.	-	1	Parent=Os05t0113500-05
Chr05	irgsp1_rep	three_prime_UTR	719167	719397	.	-	.	Parent=Os05t0113500-05
Chr05	irgsp1_rep	mRNA	738208	739079	.	+	.	ID=Os05t0113900-01;Name=Os05t0113900-01;Locus_id=Os05g0113900;Oryzabase Gene Name Synonym(s)=Histone H2A;Note=Similar to Histone H2A.;Transcript_evidence=AK074018 (DDBJ%2C Best hit);ORF_evidence=C6TMV8 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H2A (IPR002119),Histone core (IPR007125),Histone-fold (IPR009072);NIAS_FLcDNA=J033075N03;Oryzabase=12397;Expression=AK074018;TENOR=Os05t0113900-01;KEGG=Os05t0113900-01
Chr05	irgsp1_rep	five_prime_UTR	738208	738280	.	+	.	Parent=Os05t0113900-01
Chr05	irgsp1_rep	CDS	738281	738494	.	+	0	Parent=Os05t0113900-01
Chr05	irgsp1_rep	CDS	738574	738830	.	+	2	Parent=Os05t0113900-01
Chr05	irgsp1_rep	three_prime_UTR	738831	739079	.	+	.	Parent=Os05t0113900-01
Chr05	irgsp1_rep	mRNA	739658	742961	.	-	.	ID=Os05t0114000-01;Name=Os05t0114000-01;Locus_id=Os05g0114000;Oryzabase Gene Name Synonym(s)=sPPase%2C Soluble Inorganic Pyrophosphatase;Note=Similar to PRLI-interacting factor F (Fragment).;Transcript_evidence=AK069313 (DDBJ%2C Best hit);ORF_evidence=NP_001148294.1 (RefSeq);GO=Biological Process: phosphate-containing compound metabolic process (GO:0006796),Cellular Component: cytoplasm (GO:0005737),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: inorganic diphosphatase activity (GO:0004427);InterPro=Inorganic pyrophosphatase (IPR008162);NIAS_FLcDNA=J023014E07;Oryzabase=22995;Expression=AK069313;TENOR=Os05t0114000-01;KEGG=Os05t0114000-01 (EC:3.6.1.1)
Chr05	irgsp1_rep	five_prime_UTR	742732	742961	.	-	.	Parent=Os05t0114000-01
Chr05	irgsp1_rep	five_prime_UTR	741720	741728	.	-	.	Parent=Os05t0114000-01
Chr05	irgsp1_rep	CDS	741584	741719	.	-	0	Parent=Os05t0114000-01
Chr05	irgsp1_rep	CDS	741470	741498	.	-	2	Parent=Os05t0114000-01
Chr05	irgsp1_rep	CDS	741167	741232	.	-	0	Parent=Os05t0114000-01
Chr05	irgsp1_rep	CDS	740952	741059	.	-	0	Parent=Os05t0114000-01
Chr05	irgsp1_rep	CDS	740639	740704	.	-	0	Parent=Os05t0114000-01
Chr05	irgsp1_rep	CDS	740429	740549	.	-	0	Parent=Os05t0114000-01
Chr05	irgsp1_rep	CDS	740069	740150	.	-	2	Parent=Os05t0114000-01
Chr05	irgsp1_rep	CDS	739929	739971	.	-	1	Parent=Os05t0114000-01
Chr05	irgsp1_rep	three_prime_UTR	739658	739928	.	-	.	Parent=Os05t0114000-01
Chr05	irgsp1_rep	mRNA	740068	741682	.	+	.	ID=Os05t0114050-00;Name=Os05t0114050-00;Locus_id=Os05g0114050;Note=Non-protein coding transcript.;Transcript_evidence=BT019269 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0114050-00
Chr05	irgsp1_rep	exon	740068	740148	.	+	.	Parent=Os05t0114050-00
Chr05	irgsp1_rep	exon	740424	740568	.	+	.	Parent=Os05t0114050-00
Chr05	irgsp1_rep	exon	740907	741067	.	+	.	Parent=Os05t0114050-00
Chr05	irgsp1_rep	exon	741176	741268	.	+	.	Parent=Os05t0114050-00
Chr05	irgsp1_rep	exon	741594	741682	.	+	.	Parent=Os05t0114050-00
Chr05	irgsp1_rep	mRNA	759008	762234	.	-	.	ID=Os05t0114100-00;Name=Os05t0114100-00;Locus_id=Os05g0114100;Note=Similar to endonuclease/exonuclease/phosphatase family protein.;Transcript_evidence=BT085735 (DDBJ);ORF_evidence=XP_002879674.1 (RefSeq);GO=Molecular Function: inositol or phosphatidylinositol phosphatase activity (GO:0004437);InterPro=Inositol polyphosphate-related phosphatase (IPR000300),Endonuclease/exonuclease/phosphatase (IPR005135);TENOR=Os05t0114100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	762110	762234	.	-	0	Parent=Os05t0114100-00
Chr05	irgsp1_rep	CDS	760899	761376	.	-	1	Parent=Os05t0114100-00
Chr05	irgsp1_rep	CDS	760574	760782	.	-	0	Parent=Os05t0114100-00
Chr05	irgsp1_rep	CDS	760358	760469	.	-	1	Parent=Os05t0114100-00
Chr05	irgsp1_rep	CDS	760087	760241	.	-	0	Parent=Os05t0114100-00
Chr05	irgsp1_rep	CDS	759008	759233	.	-	1	Parent=Os05t0114100-00
Chr05	irgsp1_rep	mRNA	760110	760791	.	+	.	ID=Os05t0114250-00;Name=Os05t0114250-00;Locus_id=Os05g0114250;Note=Hypothetical protein.;Transcript_evidence=AK368831 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0114250-00
Chr05	irgsp1_rep	five_prime_UTR	760110	760262	.	+	.	Parent=Os05t0114250-00
Chr05	irgsp1_rep	five_prime_UTR	760352	760483	.	+	.	Parent=Os05t0114250-00
Chr05	irgsp1_rep	CDS	760484	760791	.	+	0	Parent=Os05t0114250-00
Chr05	irgsp1_rep	mRNA	783214	784097	.	-	.	ID=Os05t0114400-01;Name=Os05t0114400-01;Locus_id=Os05g0114400;CGSNL Gene Symbol=DLN129;CGSNL Gene Name=DLN REPRESSOR 129;Oryzabase Gene Symbol Synonym(s)=OsDLN129;Oryzabase Gene Name Synonym(s)=DLN repressor 129%2C DLN motif protein 129;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK108981 (DDBJ%2C Best hit);ORF_evidence=Q7X9N8 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=002-153-F01;Oryzabase=23196;Expression=AK108981;TENOR=Os05t0114400-01;KEGG=Os05t0114400-01
Chr05	irgsp1_rep	five_prime_UTR	783987	784097	.	-	.	Parent=Os05t0114400-01
Chr05	irgsp1_rep	CDS	783390	783986	.	-	0	Parent=Os05t0114400-01
Chr05	irgsp1_rep	three_prime_UTR	783214	783389	.	-	.	Parent=Os05t0114400-01
Chr05	irgsp1_rep	mRNA	788862	791825	.	-	.	ID=Os05t0114500-00;Name=Os05t0114500-00;Locus_id=Os05g0114500;Note=RNA recognition motif domain domain containing protein.;Transcript_evidence=AK366607 (DDBJ);ORF_evidence=NP_001054461.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);TENOR=Os05t0114500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	791206	791825	.	-	0	Parent=Os05t0114500-00
Chr05	irgsp1_rep	CDS	790419	790581	.	-	1	Parent=Os05t0114500-00
Chr05	irgsp1_rep	CDS	789870	789916	.	-	0	Parent=Os05t0114500-00
Chr05	irgsp1_rep	CDS	789773	789815	.	-	1	Parent=Os05t0114500-00
Chr05	irgsp1_rep	three_prime_UTR	789181	789772	.	-	.	Parent=Os05t0114500-00
Chr05	irgsp1_rep	three_prime_UTR	789042	789124	.	-	.	Parent=Os05t0114500-00
Chr05	irgsp1_rep	three_prime_UTR	788862	788989	.	-	.	Parent=Os05t0114500-00
Chr05	irgsp1_rep	mRNA	791891	794636	.	+	.	ID=Os05t0114600-01;Name=Os05t0114600-01;Locus_id=Os05g0114600;Note=Conserved hypothetical protein.;Transcript_evidence=AK120824 (DDBJ%2C Best hit);ORF_evidence=B9FKC1 (UniProt);NIAS_FLcDNA=J023019D13;TENOR=Os05t0114600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	791891	791928	.	+	.	Parent=Os05t0114600-01
Chr05	irgsp1_rep	CDS	791929	792206	.	+	0	Parent=Os05t0114600-01
Chr05	irgsp1_rep	CDS	792309	792366	.	+	1	Parent=Os05t0114600-01
Chr05	irgsp1_rep	CDS	794267	794317	.	+	0	Parent=Os05t0114600-01
Chr05	irgsp1_rep	three_prime_UTR	794318	794636	.	+	.	Parent=Os05t0114600-01
Chr05	irgsp1_rep	mRNA	801229	803353	.	+	.	ID=Os05t0114700-02;Name=Os05t0114700-02;Locus_id=Os05g0114700;Note=Myb-type HTH DNA-binding domain domain containing protein.;Transcript_evidence=AK111634 (DDBJ%2C Best hit),AK099223 (DDBJ%2C Best hit);ORF_evidence=B9FKC2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J013119H17,J013091O17;Expression=AK111634;TENOR=Os05t0114700-02;KEGG=Os05t0114700-02
Chr05	irgsp1_rep	five_prime_UTR	801229	801369	.	+	.	Parent=Os05t0114700-02
Chr05	irgsp1_rep	CDS	801370	801651	.	+	0	Parent=Os05t0114700-02
Chr05	irgsp1_rep	three_prime_UTR	801652	803353	.	+	.	Parent=Os05t0114700-02
Chr05	irgsp1_rep	mRNA	811664	814064	.	+	.	ID=Os05t0114800-01;Name=Os05t0114800-01;Locus_id=Os05g0114800;Note=Hypothetical gene.;Transcript_evidence=AK107808 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-133-E10;Expression=AK107808;TENOR=Os05t0114800-01;KEGG=Os05t0114800-01
Chr05	irgsp1_rep	five_prime_UTR	811664	811665	.	+	.	Parent=Os05t0114800-01
Chr05	irgsp1_rep	CDS	811666	811927	.	+	0	Parent=Os05t0114800-01
Chr05	irgsp1_rep	CDS	813857	813963	.	+	2	Parent=Os05t0114800-01
Chr05	irgsp1_rep	three_prime_UTR	813964	814064	.	+	.	Parent=Os05t0114800-01
Chr05	irgsp1_rep	mRNA	821545	826140	.	+	.	ID=Os05t0114950-01;Name=Os05t0114950-01;Locus_id=Os05g0114950;Note=Hypothetical conserved gene.;Transcript_evidence=AK288429 (DDBJ%2C Best hit);ORF_evidence=Q65XA9 (UniProt);NIAS_FLcDNA=J090033C09;TENOR=Os05t0114950-01;KEGG=Os05t0114950-01
Chr05	irgsp1_rep	five_prime_UTR	821545	822703	.	+	.	Parent=Os05t0114950-01
Chr05	irgsp1_rep	CDS	822704	823144	.	+	0	Parent=Os05t0114950-01
Chr05	irgsp1_rep	three_prime_UTR	823145	826140	.	+	.	Parent=Os05t0114950-01
Chr05	irgsp1_rep	mRNA	835735	836731	.	+	.	ID=Os05t0115100-01;Name=Os05t0115100-01;Locus_id=Os05g0115100;Note=Hypothetical conserved gene.;Transcript_evidence=AK110672 (DDBJ%2C Best hit);ORF_evidence=Q65XA7 (UniProt);NIAS_FLcDNA=002-169-G04;Expression=AK110672;TENOR=Os05t0115100-01;KEGG=Os05t0115100-01
Chr05	irgsp1_rep	five_prime_UTR	835735	836417	.	+	.	Parent=Os05t0115100-01
Chr05	irgsp1_rep	CDS	836418	836720	.	+	0	Parent=Os05t0115100-01
Chr05	irgsp1_rep	three_prime_UTR	836721	836731	.	+	.	Parent=Os05t0115100-01
Chr05	irgsp1_rep	mRNA	835764	838113	.	+	.	ID=Os05t0115100-02;Name=Os05t0115100-02;Locus_id=Os05g0115100;Note=Protein of unknown function DUF1635 family protein.;Transcript_evidence=AK106226 (DDBJ%2C Best hit);ORF_evidence=B8AXA5 (UniProt);InterPro=Protein of unknown function DUF1635 (IPR012862);NIAS_FLcDNA=002-100-A05;Expression=AK106226;TENOR=Os05t0115100-02;KEGG=Os05t0115100-02
Chr05	irgsp1_rep	five_prime_UTR	835764	836012	.	+	.	Parent=Os05t0115100-02
Chr05	irgsp1_rep	CDS	836013	836111	.	+	0	Parent=Os05t0115100-02
Chr05	irgsp1_rep	CDS	837074	837787	.	+	0	Parent=Os05t0115100-02
Chr05	irgsp1_rep	three_prime_UTR	837788	838113	.	+	.	Parent=Os05t0115100-02
Chr05	irgsp1_rep	mRNA	839259	841589	.	-	.	ID=Os05t0115200-01;Name=Os05t0115200-01;Locus_id=Os05g0115200;Note=Non-protein coding transcript.;Transcript_evidence=AK106709 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-114-F02;TENOR=Os05t0115200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	exon	841388	841589	.	-	.	Parent=Os05t0115200-01
Chr05	irgsp1_rep	exon	839259	839966	.	-	.	Parent=Os05t0115200-01
Chr05	irgsp1_rep	mRNA	841816	847237	.	+	.	ID=Os05t0115500-00;Name=Os05t0115500-00;Locus_id=Os05g0115500;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B7F743 (UniProt);InterPro=Protein of unknown function DUF569 (IPR007679),Actin cross-linking (IPR008999);TENOR=Os05t0115500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	841816	842325	.	+	0	Parent=Os05t0115500-00
Chr05	irgsp1_rep	CDS	846932	847237	.	+	0	Parent=Os05t0115500-00
Chr05	irgsp1_rep	mRNA	849168	850376	.	+	.	ID=Os05t0115600-01;Name=Os05t0115600-01;Locus_id=Os05g0115600;Note=Protein of unknown function DUF674 family protein.;Transcript_evidence=AK063589 (DDBJ%2C Best hit);ORF_evidence=A2XZP1 (UniProt);InterPro=Protein of unknown function DUF674 (IPR007750);NIAS_FLcDNA=001-118-A10;Expression=AK063589;TENOR=Os05t0115600-01;KEGG=Os05t0115600-01
Chr05	irgsp1_rep	five_prime_UTR	849168	849220	.	+	.	Parent=Os05t0115600-01
Chr05	irgsp1_rep	CDS	849221	849877	.	+	0	Parent=Os05t0115600-01
Chr05	irgsp1_rep	CDS	850115	850189	.	+	0	Parent=Os05t0115600-01
Chr05	irgsp1_rep	three_prime_UTR	850190	850376	.	+	.	Parent=Os05t0115600-01
Chr05	irgsp1_rep	mRNA	849241	849897	.	-	.	ID=Os05t0115650-00;Name=Os05t0115650-00;Locus_id=Os05g0115650;Note=Hypothetical protein.;Transcript_evidence=BT085097 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0115650-00
Chr05	irgsp1_rep	five_prime_UTR	849896	849897	.	-	.	Parent=Os05t0115650-00
Chr05	irgsp1_rep	CDS	849241	849895	.	-	0	Parent=Os05t0115650-00
Chr05	irgsp1_rep	mRNA	851777	858063	.	+	.	ID=Os05t0115700-01;Name=Os05t0115700-01;Locus_id=Os05g0115700;Note=Similar to UDP-galactose transporter related protein-like.;Transcript_evidence=AK070819 (DDBJ%2C Best hit);ORF_evidence=NP_001150097.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085);InterPro=UAA transporter (IPR013657);NIAS_FLcDNA=J023065F02;Expression=AK070819;TENOR=Os05t0115700-01;KEGG=Os05t0115700-01
Chr05	irgsp1_rep	five_prime_UTR	851777	851910	.	+	.	Parent=Os05t0115700-01
Chr05	irgsp1_rep	CDS	851911	852084	.	+	0	Parent=Os05t0115700-01
Chr05	irgsp1_rep	CDS	854498	854611	.	+	0	Parent=Os05t0115700-01
Chr05	irgsp1_rep	CDS	854686	854778	.	+	0	Parent=Os05t0115700-01
Chr05	irgsp1_rep	CDS	854866	854931	.	+	0	Parent=Os05t0115700-01
Chr05	irgsp1_rep	CDS	855421	855519	.	+	0	Parent=Os05t0115700-01
Chr05	irgsp1_rep	CDS	855825	855904	.	+	0	Parent=Os05t0115700-01
Chr05	irgsp1_rep	CDS	856384	856496	.	+	1	Parent=Os05t0115700-01
Chr05	irgsp1_rep	CDS	856945	857033	.	+	2	Parent=Os05t0115700-01
Chr05	irgsp1_rep	CDS	857300	857386	.	+	0	Parent=Os05t0115700-01
Chr05	irgsp1_rep	CDS	857473	857541	.	+	0	Parent=Os05t0115700-01
Chr05	irgsp1_rep	CDS	857630	857728	.	+	0	Parent=Os05t0115700-01
Chr05	irgsp1_rep	three_prime_UTR	857729	858063	.	+	.	Parent=Os05t0115700-01
Chr05	irgsp1_rep	mRNA	858399	862739	.	-	.	ID=Os05t0115800-01;Name=Os05t0115800-01;Locus_id=Os05g0115800;RAP-DB Gene Symbol Synonym(s)=GSN1%2C OsMKP1;RAP-DB Gene Name Synonym(s)=GRAIN SIZE AND NUMBER1%2C Mitogen-Activated Protein Kinase Phosphatase 1;CGSNL Gene Symbol=GSN1;CGSNL Gene Name=GRAIN SIZE AND NUMBER1;Oryzabase Gene Symbol Synonym(s)=MKP1%2C OsMKP1%2C osmkp1%2C LARGE8%2C GLA1%2C OsGLA1;Oryzabase Gene Name Synonym(s)=Oryza sativa Mitogen-Activated Protein Kinase Phosphatase 1%2C Mitogen-Activated Protein Kinase Phosphatase 1%2C MAPK phosphatase 1%2C large grain8%2C LARGE GRAIN 8%2C grain size and number1%2C grain size and number 1%2C grain length and awn 1;Note=Mitogen-activated protein kinase (MAPK) phosphatase%2C Negative regulation of wound responses%2C Negative regulator of grain size%2C Positive regulator of grain number;Transcript_evidence=AB284130,AK105748 (truncated);ORF_evidence=A2V7M8;GO=Biological Process: protein dephosphorylation (GO:0006470),Biological Process: dephosphorylation (GO:0016311),Molecular Function: protein tyrosine phosphatase activity (GO:0004725),Molecular Function: protein tyrosine/serine/threonine phosphatase activity (GO:0008138),Molecular Function: phosphatase activity (GO:0016791);InterPro=Protein-tyrosine phosphatase-like (IPR029021),ADF-H/Gelsolin-like domain superfamily (IPR029006),Dual specificity phosphatase%2C catalytic domain (IPR000340),Tyrosine specific protein phosphatases domain (IPR000387),Dual specificity protein phosphatase domain (IPR020422),Protein-tyrosine phosphatase%2C active site (IPR016130);NIAS_FLcDNA=001-202-B08 (truncated);Manual Curation=May 22%2C 2018;Literature_PMID=29588389,17218330;Oryzabase=7294;TENOR=Os05t0115800-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=cytoplasm (GO:0005737)
Chr05	irgsp1_rep	five_prime_UTR	862632	862739	.	-	.	Parent=Os05t0115800-01
Chr05	irgsp1_rep	five_prime_UTR	862489	862521	.	-	.	Parent=Os05t0115800-01
Chr05	irgsp1_rep	CDS	860248	862488	.	-	0	Parent=Os05t0115800-01
Chr05	irgsp1_rep	CDS	858867	858920	.	-	0	Parent=Os05t0115800-01
Chr05	irgsp1_rep	three_prime_UTR	858399	858866	.	-	.	Parent=Os05t0115800-01
Chr05	irgsp1_rep	mRNA	858411	860690	.	-	.	ID=Os05t0115800-02;Name=Os05t0115800-02;Locus_id=Os05g0115800;CGSNL Gene Symbol=GSN1;CGSNL Gene Name=GRAIN SIZE AND NUMBER1;Oryzabase Gene Symbol Synonym(s)=MKP1%2C OsMKP1%2C osmkp1%2C LARGE8%2C GLA1%2C OsGLA1;Oryzabase Gene Name Synonym(s)=Oryza sativa Mitogen-Activated Protein Kinase Phosphatase 1%2C Mitogen-Activated Protein Kinase Phosphatase 1%2C MAPK phosphatase 1%2C large grain8%2C LARGE GRAIN 8%2C grain size and number1%2C grain size and number 1%2C grain length and awn 1;Note=Similar to MAP kinase phosphatase.;Transcript_evidence=AK067768 (DDBJ%2C Best hit);ORF_evidence=A2V7M8 (UniProt);NIAS_FLcDNA=J013118E17;Oryzabase=7294;TENOR=Os05t0115800-02
Chr05	irgsp1_rep	five_prime_UTR	860689	860690	.	-	.	Parent=Os05t0115800-02
Chr05	irgsp1_rep	CDS	860248	860688	.	-	0	Parent=Os05t0115800-02
Chr05	irgsp1_rep	CDS	858867	858920	.	-	0	Parent=Os05t0115800-02
Chr05	irgsp1_rep	three_prime_UTR	858411	858866	.	-	.	Parent=Os05t0115800-02
Chr05	irgsp1_rep	mRNA	865008	870797	.	-	.	ID=Os05t0115900-01;Name=Os05t0115900-01;Locus_id=Os05g0115900;Oryzabase Gene Name Synonym(s)=beta-hexosaminidase;Note=Glycoside hydrolase%2C family 20 protein.;Transcript_evidence=AK069009 (DDBJ%2C Best hit);ORF_evidence=B6ST04 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: beta-N-acetylhexosaminidase activity (GO:0004563),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 20 (IPR001540),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Acetylhexosaminidase%2C subunit a/b (IPR015882),Glycoside hydrolase%2C family 20%2C catalytic core (IPR015883),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J023002J15;Oryzabase=21914;Expression=AK069009;TENOR=Os05t0115900-01;KEGG=Os05t0115900-01 (EC:3.2.1.52)
Chr05	irgsp1_rep	five_prime_UTR	870742	870797	.	-	.	Parent=Os05t0115900-01
Chr05	irgsp1_rep	CDS	870400	870741	.	-	0	Parent=Os05t0115900-01
Chr05	irgsp1_rep	CDS	870210	870296	.	-	0	Parent=Os05t0115900-01
Chr05	irgsp1_rep	CDS	869483	869518	.	-	0	Parent=Os05t0115900-01
Chr05	irgsp1_rep	CDS	869083	869194	.	-	0	Parent=Os05t0115900-01
Chr05	irgsp1_rep	CDS	868925	868995	.	-	2	Parent=Os05t0115900-01
Chr05	irgsp1_rep	CDS	868696	868826	.	-	0	Parent=Os05t0115900-01
Chr05	irgsp1_rep	CDS	868554	868570	.	-	1	Parent=Os05t0115900-01
Chr05	irgsp1_rep	CDS	868284	868332	.	-	2	Parent=Os05t0115900-01
Chr05	irgsp1_rep	CDS	867754	867854	.	-	1	Parent=Os05t0115900-01
Chr05	irgsp1_rep	CDS	867091	867150	.	-	2	Parent=Os05t0115900-01
Chr05	irgsp1_rep	CDS	866238	866271	.	-	2	Parent=Os05t0115900-01
Chr05	irgsp1_rep	CDS	866052	866150	.	-	1	Parent=Os05t0115900-01
Chr05	irgsp1_rep	CDS	865890	865949	.	-	1	Parent=Os05t0115900-01
Chr05	irgsp1_rep	CDS	865525	865775	.	-	1	Parent=Os05t0115900-01
Chr05	irgsp1_rep	CDS	865230	865405	.	-	2	Parent=Os05t0115900-01
Chr05	irgsp1_rep	three_prime_UTR	865008	865229	.	-	.	Parent=Os05t0115900-01
Chr05	irgsp1_rep	mRNA	865006	870796	.	-	.	ID=Os05t0115900-02;Name=Os05t0115900-02;Locus_id=Os05g0115900;Oryzabase Gene Name Synonym(s)=beta-hexosaminidase;Note=Similar to beta-hexosaminidase beta chain.;Transcript_evidence=AK060214 (DDBJ%2C Best hit);ORF_evidence=B6ST04 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: beta-N-acetylhexosaminidase activity (GO:0004563),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 20 (IPR001540),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Acetylhexosaminidase%2C subunit a/b (IPR015882),Glycoside hydrolase%2C family 20%2C catalytic core (IPR015883),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-002-C07;Oryzabase=21914;Expression=AK060214;TENOR=Os05t0115900-02;KEGG=Os05t0115900-02 (EC:3.2.1.52)
Chr05	irgsp1_rep	five_prime_UTR	870708	870796	.	-	.	Parent=Os05t0115900-02
Chr05	irgsp1_rep	CDS	870704	870707	.	-	0	Parent=Os05t0115900-02
Chr05	irgsp1_rep	CDS	870400	870488	.	-	2	Parent=Os05t0115900-02
Chr05	irgsp1_rep	CDS	870210	870296	.	-	0	Parent=Os05t0115900-02
Chr05	irgsp1_rep	CDS	869483	869518	.	-	0	Parent=Os05t0115900-02
Chr05	irgsp1_rep	CDS	869083	869194	.	-	0	Parent=Os05t0115900-02
Chr05	irgsp1_rep	CDS	868925	868995	.	-	2	Parent=Os05t0115900-02
Chr05	irgsp1_rep	CDS	868554	868826	.	-	0	Parent=Os05t0115900-02
Chr05	irgsp1_rep	CDS	868284	868332	.	-	0	Parent=Os05t0115900-02
Chr05	irgsp1_rep	CDS	867802	867854	.	-	2	Parent=Os05t0115900-02
Chr05	irgsp1_rep	three_prime_UTR	867754	867801	.	-	.	Parent=Os05t0115900-02
Chr05	irgsp1_rep	three_prime_UTR	866238	866271	.	-	.	Parent=Os05t0115900-02
Chr05	irgsp1_rep	three_prime_UTR	866052	866150	.	-	.	Parent=Os05t0115900-02
Chr05	irgsp1_rep	three_prime_UTR	865890	865949	.	-	.	Parent=Os05t0115900-02
Chr05	irgsp1_rep	three_prime_UTR	865525	865775	.	-	.	Parent=Os05t0115900-02
Chr05	irgsp1_rep	three_prime_UTR	865006	865405	.	-	.	Parent=Os05t0115900-02
Chr05	irgsp1_rep	mRNA	865291	868831	.	+	.	ID=Os05t0115950-00;Name=Os05t0115950-00;Locus_id=Os05g0115950;Note=Non-protein coding transcript.;Transcript_evidence=tplb0055b10 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os05t0115950-00
Chr05	irgsp1_rep	exon	865291	865364	.	+	.	Parent=Os05t0115950-00
Chr05	irgsp1_rep	exon	865494	865802	.	+	.	Parent=Os05t0115950-00
Chr05	irgsp1_rep	exon	866026	866174	.	+	.	Parent=Os05t0115950-00
Chr05	irgsp1_rep	exon	867682	867899	.	+	.	Parent=Os05t0115950-00
Chr05	irgsp1_rep	exon	868676	868831	.	+	.	Parent=Os05t0115950-00
Chr05	irgsp1_rep	mRNA	873177	876094	.	-	.	ID=Os05t0116000-01;Name=Os05t0116000-01;Locus_id=Os05g0116000;Note=Cupin%2C RmlC-type domain containing protein.;Transcript_evidence=AK121775 (DDBJ%2C Best hit);ORF_evidence=NP_001105062.1 (RefSeq);GO=Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=11-S seed storage protein%2C plant (IPR006044),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710);NIAS_FLcDNA=J033092N18;Expression=AK121775;TENOR=Os05t0116000-01;KEGG=Os05t0116000-01
Chr05	irgsp1_rep	five_prime_UTR	875851	876094	.	-	.	Parent=Os05t0116000-01
Chr05	irgsp1_rep	CDS	875652	875850	.	-	0	Parent=Os05t0116000-01
Chr05	irgsp1_rep	CDS	873784	874513	.	-	2	Parent=Os05t0116000-01
Chr05	irgsp1_rep	CDS	873358	873508	.	-	1	Parent=Os05t0116000-01
Chr05	irgsp1_rep	three_prime_UTR	873177	873357	.	-	.	Parent=Os05t0116000-01
Chr05	irgsp1_rep	mRNA	873167	875943	.	-	.	ID=Os05t0116000-02;Name=Os05t0116000-02;Locus_id=Os05g0116000;Note=Cupin%2C RmlC-type domain containing protein.;Transcript_evidence=AK058320 (DDBJ%2C Best hit);ORF_evidence=NP_001105062.1 (RefSeq);GO=Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=11-S seed storage protein%2C plant (IPR006044),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710);NIAS_FLcDNA=001-014-A11;TENOR=Os05t0116000-02
Chr05	irgsp1_rep	five_prime_UTR	875851	875943	.	-	.	Parent=Os05t0116000-02
Chr05	irgsp1_rep	CDS	875652	875850	.	-	0	Parent=Os05t0116000-02
Chr05	irgsp1_rep	CDS	873784	874513	.	-	2	Parent=Os05t0116000-02
Chr05	irgsp1_rep	CDS	873358	873508	.	-	1	Parent=Os05t0116000-02
Chr05	irgsp1_rep	three_prime_UTR	873167	873357	.	-	.	Parent=Os05t0116000-02
Chr05	irgsp1_rep	mRNA	877099	880445	.	-	.	ID=Os05t0116100-01;Name=Os05t0116100-01;Locus_id=Os05g0116100;RAP-DB Gene Symbol Synonym(s)=OsDHAR;RAP-DB Gene Name Synonym(s)=dehydroascorbate reductase;CGSNL Gene Symbol=DHAR1;CGSNL Gene Name=DEHYDROASCORBATE REDUCTASE 1;Oryzabase Gene Symbol Synonym(s)=OsDHAR1%2C DHAR%2C cytDHAR%2C OsDHAR;Oryzabase Gene Name Synonym(s)=DHAR class GLUTATHIONE S-TRANSFERASE 1%2C dehydroascorbate reductase%2C dehydroascorbate reductase 1%2C cytosolic dehydroascorbate reductase;Note=Dehydroascorbate reductase%2C Ascorbate homeostasis%2C Recycling of ascorbate%2C Inhibitor of stress-induced protein aggregation;Transcript_evidence=AK061836,AK070895;ORF_evidence=Q65XA0;GO=Molecular Function: protein binding (GO:0005515);InterPro=Thioredoxin-like superfamily (IPR036249),Glutathione S-transferase%2C C-terminal domain superfamily (IPR036282),Glutathione Transferase family (IPR040079),Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal-like (IPR010987);NIAS_FLcDNA=001-040-D08,J023074C02;Manual Curation=March 24%2C 2020;Literature_PMID=32194605,26775680;Oryzabase=9572;Expression=AK061836;TENOR=Os05t0116100-01;KEGG=Os05t0116100-01
Chr05	irgsp1_rep	five_prime_UTR	880362	880445	.	-	.	Parent=Os05t0116100-01
Chr05	irgsp1_rep	CDS	880304	880361	.	-	0	Parent=Os05t0116100-01
Chr05	irgsp1_rep	CDS	880106	880196	.	-	2	Parent=Os05t0116100-01
Chr05	irgsp1_rep	CDS	878727	878873	.	-	1	Parent=Os05t0116100-01
Chr05	irgsp1_rep	CDS	878094	878211	.	-	1	Parent=Os05t0116100-01
Chr05	irgsp1_rep	CDS	877609	877749	.	-	0	Parent=Os05t0116100-01
Chr05	irgsp1_rep	CDS	877426	877512	.	-	0	Parent=Os05t0116100-01
Chr05	irgsp1_rep	three_prime_UTR	877099	877425	.	-	.	Parent=Os05t0116100-01
Chr05	irgsp1_rep	mRNA	877631	880196	.	+	.	ID=Os05t0116150-00;Name=Os05t0116150-00;Locus_id=Os05g0116150;Note=Non-protein coding transcript.;Transcript_evidence=AJ622892 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0116150-00
Chr05	irgsp1_rep	exon	877631	877746	.	+	.	Parent=Os05t0116150-00
Chr05	irgsp1_rep	exon	878091	878223	.	+	.	Parent=Os05t0116150-00
Chr05	irgsp1_rep	exon	878743	878881	.	+	.	Parent=Os05t0116150-00
Chr05	irgsp1_rep	exon	880109	880196	.	+	.	Parent=Os05t0116150-00
Chr05	irgsp1_rep	mRNA	887654	889381	.	-	.	ID=Os05t0116350-01;Name=Os05t0116350-01;Locus_id=Os05g0116350;Note=Hypothetical conserved gene.;Transcript_evidence=AK241826 (DDBJ%2C Best hit);ORF_evidence=B9FM61 (UniProt);NIAS_FLcDNA=J065212I23;TENOR=Os05t0116350-01;KEGG=Os05t0116350-01
Chr05	irgsp1_rep	five_prime_UTR	888929	889381	.	-	.	Parent=Os05t0116350-01
Chr05	irgsp1_rep	five_prime_UTR	888572	888663	.	-	.	Parent=Os05t0116350-01
Chr05	irgsp1_rep	CDS	888527	888571	.	-	0	Parent=Os05t0116350-01
Chr05	irgsp1_rep	CDS	887966	888085	.	-	0	Parent=Os05t0116350-01
Chr05	irgsp1_rep	three_prime_UTR	887654	887965	.	-	.	Parent=Os05t0116350-01
Chr05	irgsp1_rep	mRNA	890730	893457	.	-	.	ID=Os05t0116500-01;Name=Os05t0116500-01;Locus_id=Os05g0116500;Note=Conserved hypothetical protein.;Transcript_evidence=AK102231 (DDBJ%2C Best hit);ORF_evidence=B9FM60 (UniProt);NIAS_FLcDNA=J033088A05;TENOR=Os05t0116500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	893356	893457	.	-	.	Parent=Os05t0116500-01
Chr05	irgsp1_rep	five_prime_UTR	892756	892863	.	-	.	Parent=Os05t0116500-01
Chr05	irgsp1_rep	CDS	892480	892755	.	-	0	Parent=Os05t0116500-01
Chr05	irgsp1_rep	three_prime_UTR	890730	892479	.	-	.	Parent=Os05t0116500-01
Chr05	irgsp1_rep	mRNA	894978	896572	.	-	.	ID=Os05t0116600-01;Name=Os05t0116600-01;Locus_id=Os05g0116600;Oryzabase Gene Symbol Synonym(s)=Os_F0617;Note=F-box associated type 1 domain containing protein.;Transcript_evidence=AK109828 (DDBJ%2C Best hit);ORF_evidence=A2XZP9 (UniProt);InterPro=F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-148-B10;Oryzabase=17494;Expression=AK109828;TENOR=Os05t0116600-01;KEGG=Os05t0116600-01
Chr05	irgsp1_rep	five_prime_UTR	896528	896572	.	-	.	Parent=Os05t0116600-01
Chr05	irgsp1_rep	CDS	895100	896527	.	-	0	Parent=Os05t0116600-01
Chr05	irgsp1_rep	three_prime_UTR	894978	895099	.	-	.	Parent=Os05t0116600-01
Chr05	irgsp1_rep	mRNA	898855	903040	.	+	.	ID=Os05t0116700-01;Name=Os05t0116700-01;Locus_id=Os05g0116700;Note=Protein of unknown function DUF3741 domain containing protein.;Transcript_evidence=AK121961 (DDBJ%2C Best hit);ORF_evidence=B9FM60 (UniProt);InterPro=Protein of unknown function DUF3741 (IPR022212);NIAS_FLcDNA=J033107O09;TENOR=Os05t0116700-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	898855	898928	.	+	.	Parent=Os05t0116700-01
Chr05	irgsp1_rep	CDS	898929	899028	.	+	0	Parent=Os05t0116700-01
Chr05	irgsp1_rep	CDS	899134	899219	.	+	2	Parent=Os05t0116700-01
Chr05	irgsp1_rep	CDS	899487	899576	.	+	0	Parent=Os05t0116700-01
Chr05	irgsp1_rep	CDS	899682	901559	.	+	0	Parent=Os05t0116700-01
Chr05	irgsp1_rep	CDS	901951	902140	.	+	0	Parent=Os05t0116700-01
Chr05	irgsp1_rep	CDS	902233	902828	.	+	2	Parent=Os05t0116700-01
Chr05	irgsp1_rep	three_prime_UTR	902829	903040	.	+	.	Parent=Os05t0116700-01
Chr05	irgsp1_rep	mRNA	899144	902816	.	-	.	ID=Os05t0116750-00;Name=Os05t0116750-00;Locus_id=Os05g0116750;Note=Hypothetical protein.;Transcript_evidence=tplb0056a13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0116750-00
Chr05	irgsp1_rep	five_prime_UTR	902234	902816	.	-	.	Parent=Os05t0116750-00
Chr05	irgsp1_rep	five_prime_UTR	901955	902141	.	-	.	Parent=Os05t0116750-00
Chr05	irgsp1_rep	five_prime_UTR	899849	901557	.	-	.	Parent=Os05t0116750-00
Chr05	irgsp1_rep	CDS	899694	899848	.	-	0	Parent=Os05t0116750-00
Chr05	irgsp1_rep	CDS	899484	899591	.	-	1	Parent=Os05t0116750-00
Chr05	irgsp1_rep	CDS	899217	899217	.	-	1	Parent=Os05t0116750-00
Chr05	irgsp1_rep	three_prime_UTR	899144	899216	.	-	.	Parent=Os05t0116750-00
Chr05	irgsp1_rep	mRNA	903472	904692	.	-	.	ID=Os05t0116800-00;Name=Os05t0116800-00;Locus_id=Os05g0116800;Note=Transferase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FM59 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os05t0116800-00
Chr05	irgsp1_rep	CDS	903472	904692	.	-	0	Parent=Os05t0116800-00
Chr05	irgsp1_rep	mRNA	903532	904759	.	+	.	ID=Os05t0116850-00;Name=Os05t0116850-00;Locus_id=Os05g0116850;Note=Hypothetical protein.;Transcript_evidence=tplb0014h21 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0116850-00
Chr05	irgsp1_rep	CDS	903532	904206	.	+	0	Parent=Os05t0116850-00
Chr05	irgsp1_rep	three_prime_UTR	904207	904759	.	+	.	Parent=Os05t0116850-00
Chr05	irgsp1_rep	mRNA	912965	913746	.	+	.	ID=Os05t0117000-00;Name=Os05t0117000-00;Locus_id=Os05g0117000;Note=Similar to CLE family OsCLE501 protein.;Transcript_evidence=CT837513 (DDBJ%2C Best hit);ORF_evidence=A8R3P4 (UniProt);TENOR=Os05t0117000-00;KEGG=Os05t0117000-00
Chr05	irgsp1_rep	five_prime_UTR	912965	913013	.	+	.	Parent=Os05t0117000-00
Chr05	irgsp1_rep	CDS	913014	913364	.	+	0	Parent=Os05t0117000-00
Chr05	irgsp1_rep	three_prime_UTR	913365	913746	.	+	.	Parent=Os05t0117000-00
Chr05	irgsp1_rep	mRNA	919592	920499	.	+	.	ID=Os05t0117300-00;Name=Os05t0117300-00;Locus_id=Os05g0117300;Oryzabase Gene Symbol Synonym(s)=OsCLE502%2C CLE502;Oryzabase Gene Name Synonym(s)=CLV3/ESR-related 502%2C CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 502;Note=Conserved hypothetical protein.;Transcript_evidence=AB332069 (DDBJ%2C Best hit);ORF_evidence=NP_001054474.1 (RefSeq);Oryzabase=14239;TENOR=Os05t0117300-00;KEGG=Os05t0117300-00
Chr05	irgsp1_rep	CDS	919592	920116	.	+	0	Parent=Os05t0117300-00
Chr05	irgsp1_rep	CDS	920437	920499	.	+	0	Parent=Os05t0117300-00
Chr05	irgsp1_rep	mRNA	922037	926090	.	+	.	ID=Os05t0117500-01;Name=Os05t0117500-01;Locus_id=Os05g0117500;Note=Similar to Nudix hydrolase 9 (EC 3.6.1.-) (AtNUDT9).;Transcript_evidence=AK073223 (DDBJ%2C Best hit);ORF_evidence=NP_001149287.1 (RefSeq);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=NUDIX hydrolase domain (IPR000086),NUDIX hydrolase domain-like (IPR015797);NIAS_FLcDNA=J033022H22;Expression=AK073223;TENOR=Os05t0117500-01;KEGG=Os05t0117500-01
Chr05	irgsp1_rep	five_prime_UTR	922037	922144	.	+	.	Parent=Os05t0117500-01
Chr05	irgsp1_rep	CDS	922145	922228	.	+	0	Parent=Os05t0117500-01
Chr05	irgsp1_rep	CDS	922755	922829	.	+	0	Parent=Os05t0117500-01
Chr05	irgsp1_rep	CDS	922915	922971	.	+	0	Parent=Os05t0117500-01
Chr05	irgsp1_rep	CDS	923514	923596	.	+	0	Parent=Os05t0117500-01
Chr05	irgsp1_rep	CDS	923769	923827	.	+	1	Parent=Os05t0117500-01
Chr05	irgsp1_rep	CDS	924189	924337	.	+	2	Parent=Os05t0117500-01
Chr05	irgsp1_rep	CDS	924594	924731	.	+	0	Parent=Os05t0117500-01
Chr05	irgsp1_rep	CDS	925207	925365	.	+	0	Parent=Os05t0117500-01
Chr05	irgsp1_rep	CDS	925496	925591	.	+	0	Parent=Os05t0117500-01
Chr05	irgsp1_rep	three_prime_UTR	925592	925608	.	+	.	Parent=Os05t0117500-01
Chr05	irgsp1_rep	three_prime_UTR	925797	926090	.	+	.	Parent=Os05t0117500-01
Chr05	irgsp1_rep	mRNA	926397	933728	.	+	.	ID=Os05t0117600-00;Name=Os05t0117600-00;Locus_id=Os05g0117600;Note=Hypothetical conserved gene.;Transcript_evidence=AK332649 (DDBJ);ORF_evidence=B8AXB6 (UniProt);InterPro=E3 UFM1-protein ligase 1 (IPR018611);TENOR=Os05t0117600-00;KEGG=Os05t0117600-00
Chr05	irgsp1_rep	five_prime_UTR	926397	926451	.	+	.	Parent=Os05t0117600-00
Chr05	irgsp1_rep	CDS	926452	926625	.	+	0	Parent=Os05t0117600-00
Chr05	irgsp1_rep	CDS	927305	927616	.	+	0	Parent=Os05t0117600-00
Chr05	irgsp1_rep	CDS	928160	928426	.	+	0	Parent=Os05t0117600-00
Chr05	irgsp1_rep	CDS	928506	928553	.	+	0	Parent=Os05t0117600-00
Chr05	irgsp1_rep	CDS	929004	929069	.	+	0	Parent=Os05t0117600-00
Chr05	irgsp1_rep	CDS	929148	929251	.	+	0	Parent=Os05t0117600-00
Chr05	irgsp1_rep	CDS	929672	929765	.	+	1	Parent=Os05t0117600-00
Chr05	irgsp1_rep	CDS	929835	929891	.	+	0	Parent=Os05t0117600-00
Chr05	irgsp1_rep	CDS	930011	930434	.	+	0	Parent=Os05t0117600-00
Chr05	irgsp1_rep	CDS	930513	930667	.	+	2	Parent=Os05t0117600-00
Chr05	irgsp1_rep	CDS	930764	930829	.	+	0	Parent=Os05t0117600-00
Chr05	irgsp1_rep	CDS	930924	930992	.	+	0	Parent=Os05t0117600-00
Chr05	irgsp1_rep	CDS	931243	931329	.	+	0	Parent=Os05t0117600-00
Chr05	irgsp1_rep	CDS	931453	931518	.	+	0	Parent=Os05t0117600-00
Chr05	irgsp1_rep	CDS	932629	932675	.	+	0	Parent=Os05t0117600-00
Chr05	irgsp1_rep	CDS	932748	932811	.	+	1	Parent=Os05t0117600-00
Chr05	irgsp1_rep	CDS	933029	933106	.	+	0	Parent=Os05t0117600-00
Chr05	irgsp1_rep	CDS	933212	933274	.	+	0	Parent=Os05t0117600-00
Chr05	irgsp1_rep	CDS	933347	933439	.	+	0	Parent=Os05t0117600-00
Chr05	irgsp1_rep	CDS	933572	933676	.	+	0	Parent=Os05t0117600-00
Chr05	irgsp1_rep	three_prime_UTR	933677	933728	.	+	.	Parent=Os05t0117600-00
Chr05	irgsp1_rep	mRNA	935340	935412	.	-	.	ID=Os05t0117667-00;Name=Os05t0117667-00;Locus_id=Os05g0117667;Note=Non-protein coding transcript.;Transcript_evidence=X06283 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0117667-00
Chr05	irgsp1_rep	exon	935340	935412	.	-	.	Parent=Os05t0117667-00
Chr05	irgsp1_rep	mRNA	940495	947009	.	+	.	ID=Os05t0117798-01;Name=Os05t0117798-01;Locus_id=Os05g0117798;Note=Kinesin%2C motor region domain containing protein.;Transcript_evidence=AK068757 (DDBJ%2C Best hit);ORF_evidence=Q2HU33 (UniProt);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752),Kinesin%2C motor region%2C conserved site (IPR019821);NIAS_FLcDNA=J013159H12;TENOR=Os05t0117798-01;KEGG=Os05t0117798-01
Chr05	irgsp1_rep	five_prime_UTR	940495	940591	.	+	.	Parent=Os05t0117798-01
Chr05	irgsp1_rep	five_prime_UTR	941349	941409	.	+	.	Parent=Os05t0117798-01
Chr05	irgsp1_rep	CDS	941410	941579	.	+	0	Parent=Os05t0117798-01
Chr05	irgsp1_rep	CDS	941672	941801	.	+	1	Parent=Os05t0117798-01
Chr05	irgsp1_rep	CDS	941960	942121	.	+	0	Parent=Os05t0117798-01
Chr05	irgsp1_rep	CDS	942211	942693	.	+	0	Parent=Os05t0117798-01
Chr05	irgsp1_rep	CDS	942796	942893	.	+	0	Parent=Os05t0117798-01
Chr05	irgsp1_rep	CDS	942990	943146	.	+	1	Parent=Os05t0117798-01
Chr05	irgsp1_rep	CDS	943239	943308	.	+	0	Parent=Os05t0117798-01
Chr05	irgsp1_rep	CDS	943403	943479	.	+	2	Parent=Os05t0117798-01
Chr05	irgsp1_rep	CDS	943590	943643	.	+	0	Parent=Os05t0117798-01
Chr05	irgsp1_rep	CDS	943729	943809	.	+	0	Parent=Os05t0117798-01
Chr05	irgsp1_rep	CDS	943889	944000	.	+	0	Parent=Os05t0117798-01
Chr05	irgsp1_rep	CDS	944131	944217	.	+	2	Parent=Os05t0117798-01
Chr05	irgsp1_rep	CDS	944308	944483	.	+	2	Parent=Os05t0117798-01
Chr05	irgsp1_rep	CDS	944582	944743	.	+	0	Parent=Os05t0117798-01
Chr05	irgsp1_rep	CDS	944820	944927	.	+	0	Parent=Os05t0117798-01
Chr05	irgsp1_rep	CDS	945006	945164	.	+	0	Parent=Os05t0117798-01
Chr05	irgsp1_rep	CDS	945251	945334	.	+	0	Parent=Os05t0117798-01
Chr05	irgsp1_rep	CDS	945509	945714	.	+	0	Parent=Os05t0117798-01
Chr05	irgsp1_rep	CDS	945822	945923	.	+	1	Parent=Os05t0117798-01
Chr05	irgsp1_rep	CDS	946017	946126	.	+	1	Parent=Os05t0117798-01
Chr05	irgsp1_rep	CDS	946215	946366	.	+	2	Parent=Os05t0117798-01
Chr05	irgsp1_rep	CDS	946457	946687	.	+	0	Parent=Os05t0117798-01
Chr05	irgsp1_rep	three_prime_UTR	946688	947009	.	+	.	Parent=Os05t0117798-01
Chr05	irgsp1_rep	mRNA	945494	946692	.	-	.	ID=Os05t0117832-00;Name=Os05t0117832-00;Locus_id=Os05g0117832;Note=Non-protein coding transcript.;Transcript_evidence=EU962631 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0117832-00
Chr05	irgsp1_rep	exon	945494	946692	.	-	.	Parent=Os05t0117832-00
Chr05	irgsp1_rep	mRNA	947775	951933	.	-	.	ID=Os05t0117864-01;Name=Os05t0117864-01;Locus_id=Os05g0117864;Note=Conserved hypothetical protein.;Transcript_evidence=AK068561 (DDBJ%2C Best hit);ORF_evidence=B9FKD0 (UniProt);NIAS_FLcDNA=J013152M24;TENOR=Os05t0117864-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	951933	951933	.	-	.	Parent=Os05t0117864-01
Chr05	irgsp1_rep	CDS	948471	951932	.	-	0	Parent=Os05t0117864-01
Chr05	irgsp1_rep	three_prime_UTR	948466	948470	.	-	.	Parent=Os05t0117864-01
Chr05	irgsp1_rep	three_prime_UTR	947775	948126	.	-	.	Parent=Os05t0117864-01
Chr05	irgsp1_rep	mRNA	956022	957044	.	+	.	ID=Os05t0118000-01;Name=Os05t0118000-01;Locus_id=Os05g0118000;Note=SRR1 domain containing protein.;Transcript_evidence=AK110694 (DDBJ%2C Best hit);ORF_evidence=NP_001152112.1 (RefSeq);InterPro=Sensitivity To Red Light Reduced-like%2C SRR1 (IPR012942);NIAS_FLcDNA=002-170-A08;Expression=AK110694;TENOR=Os05t0118000-01;KEGG=Os05t0118000-01
Chr05	irgsp1_rep	five_prime_UTR	956022	956074	.	+	.	Parent=Os05t0118000-01
Chr05	irgsp1_rep	CDS	956075	956935	.	+	0	Parent=Os05t0118000-01
Chr05	irgsp1_rep	three_prime_UTR	956936	957044	.	+	.	Parent=Os05t0118000-01
Chr05	irgsp1_rep	mRNA	977812	978752	.	+	.	ID=Os05t0118700-01;Name=Os05t0118700-01;Locus_id=Os05g0118700;RAP-DB Gene Symbol Synonym(s)=LSY1%2C OsWOX3;RAP-DB Gene Name Synonym(s)=LEAF LATERAL SYMMETRY1%2C WUSCHEL-RELATED HOMEOBOX3;CGSNL Gene Symbol=GL1;CGSNL Gene Name=GLABROUS LEAF AND HULL 1;Oryzabase Gene Symbol Synonym(s)=gl1%2C NUDA/GL-1%2C NUDA/GL1%2C NUDA%2C GL-1%2C OsWOX3B%2C OsWOX2%2C OsWOX3%2C Os WOX3%2C WOX3B%2C WOX2%2C WOX3;Oryzabase Gene Name Synonym(s)=glabrous leaf and hull1%2C glabrous leaf and hull 1%2C glabrous leaf and hull-1%2C WUSCHEL-related homeobox 3B;Note=A member of the WUSCHEL-RELATED HOMEOBOX gene family%2C Regulation of lateral leaf development%2C Regulation of adaxial-abaxial patterning at the margins of the leaf primordia;Transcript_evidence=AM490244;ORF_evidence=Q5W7C3;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeobox-like domain superfamily (IPR009057),Homeobox domain (IPR001356);Manual Curation=February 23%2C 2018;Literature_PMID=29272531,17768306;Oryzabase=649;TENOR=Os05t0118700-00;KEGG=Os05t0118700-00
Chr05	irgsp1_rep	CDS	977812	978399	.	+	0	Parent=Os05t0118700-01
Chr05	irgsp1_rep	CDS	978480	978752	.	+	0	Parent=Os05t0118700-01
Chr05	irgsp1_rep	mRNA	986271	988514	.	+	.	ID=Os05t0118800-01;Name=Os05t0118800-01;Locus_id=Os05g0118800;Note=Conserved hypothetical protein.;Transcript_evidence=AK120705 (DDBJ%2C Best hit);ORF_evidence=B9FKD2 (UniProt);NIAS_FLcDNA=J023001A05;Expression=AK120705;TENOR=Os05t0118800-01;KEGG=Os05t0118800-01
Chr05	irgsp1_rep	five_prime_UTR	986271	986377	.	+	.	Parent=Os05t0118800-01
Chr05	irgsp1_rep	five_prime_UTR	988043	988052	.	+	.	Parent=Os05t0118800-01
Chr05	irgsp1_rep	CDS	988053	988220	.	+	0	Parent=Os05t0118800-01
Chr05	irgsp1_rep	three_prime_UTR	988221	988514	.	+	.	Parent=Os05t0118800-01
Chr05	irgsp1_rep	mRNA	989398	990847	.	-	.	ID=Os05t0118900-01;Name=Os05t0118900-01;Locus_id=Os05g0118900;Note=Hypothetical protein.;Transcript_evidence=AK109043 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-154-D05;Expression=AK109043;TENOR=Os05t0118900-01;KEGG=Os05t0118900-01
Chr05	irgsp1_rep	five_prime_UTR	990681	990847	.	-	.	Parent=Os05t0118900-01
Chr05	irgsp1_rep	five_prime_UTR	990510	990608	.	-	.	Parent=Os05t0118900-01
Chr05	irgsp1_rep	CDS	990042	990509	.	-	0	Parent=Os05t0118900-01
Chr05	irgsp1_rep	three_prime_UTR	989398	990041	.	-	.	Parent=Os05t0118900-01
Chr05	irgsp1_rep	mRNA	989625	990763	.	+	.	ID=Os05t0119000-01;Name=Os05t0119000-01;Locus_id=Os05g0119000;RAP-DB Gene Symbol Synonym(s)=STAR2;RAP-DB Gene Name Synonym(s)=SENSITIVE TO ALUMINIUM RHIZOTOXICITY 2%2C SENSITIVE TO AL RHIZOTOXICITY2%2C sensitive to Al rhizotoxicity2;CGSNL Gene Symbol=STAR2;CGSNL Gene Name=SENSITIVE TO ALUMINIUM RHIZOTOXICITY 2;Oryzabase Gene Symbol Synonym(s)=OsSTAR2%2C OsSATR2;Oryzabase Gene Name Synonym(s)=SENSITIVE TO AL RHIZOTOXICITY2%2C sensitive to Al rhizotoxicity2;Note=Bacterial-type ATP binding cassette (ABC) transporter%2C Al tolerance;Transcript_evidence=AB379845,AK069359;ORF_evidence=Q5W7C1;InterPro=UPF0014 family (IPR005226);NIAS_FLcDNA=J023016K03;Manual Curation=April 7%2C 2011;Literature_PMID=19880795,15857838,19244140;Oryzabase=9268;Expression=AK069359;TENOR=Os05t0119000-01;KEGG=Os05t0119000-01
Chr05	irgsp1_rep	five_prime_UTR	989625	989730	.	+	.	Parent=Os05t0119000-01
Chr05	irgsp1_rep	CDS	989731	990588	.	+	0	Parent=Os05t0119000-01
Chr05	irgsp1_rep	three_prime_UTR	990589	990763	.	+	.	Parent=Os05t0119000-01
Chr05	irgsp1_rep	mRNA	989733	991267	.	+	.	ID=Os05t0119000-02;Name=Os05t0119000-02;Locus_id=Os05g0119000;CGSNL Gene Symbol=STAR2;CGSNL Gene Name=SENSITIVE TO ALUMINIUM RHIZOTOXICITY 2;Oryzabase Gene Symbol Synonym(s)=OsSTAR2%2C OsSATR2;Oryzabase Gene Name Synonym(s)=SENSITIVE TO AL RHIZOTOXICITY2%2C sensitive to Al rhizotoxicity2;Note=Similar to membrane protein.;Transcript_evidence=AK287430 (DDBJ%2C Best hit);ORF_evidence=Q5W7C1 (UniProt);InterPro=Conserved hypothetical protein CHP00245 (IPR005226);NIAS_FLcDNA=J043011D19;Oryzabase=9268;TENOR=Os05t0119000-02;KEGG=Os05t0119000-02
Chr05	irgsp1_rep	five_prime_UTR	989733	989733	.	+	.	Parent=Os05t0119000-02
Chr05	irgsp1_rep	CDS	989734	990588	.	+	0	Parent=Os05t0119000-02
Chr05	irgsp1_rep	three_prime_UTR	990589	991267	.	+	.	Parent=Os05t0119000-02
Chr05	irgsp1_rep	mRNA	993324	993804	.	-	.	ID=Os05t0119100-01;Name=Os05t0119100-01;Locus_id=Os05g0119100;Note=Hypothetical protein.;Transcript_evidence=AK243179 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100037C01;TENOR=Os05t0119100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	993783	993804	.	-	.	Parent=Os05t0119100-01
Chr05	irgsp1_rep	CDS	993513	993782	.	-	0	Parent=Os05t0119100-01
Chr05	irgsp1_rep	three_prime_UTR	993324	993512	.	-	.	Parent=Os05t0119100-01
Chr05	irgsp1_rep	mRNA	997541	999169	.	-	.	ID=Os05t0119200-01;Name=Os05t0119200-01;Locus_id=Os05g0119200;RAP-DB Gene Symbol Synonym(s)=OsGPRP3;RAP-DB Gene Name Synonym(s)=glycine- and proline-rich protein 3;Oryzabase Gene Symbol Synonym(s)=OsGRP1;Oryzabase Gene Name Synonym(s)=glycine-rich cell-wall structural protein 1;Note=Glycine- and proline-rich protein%2C Regulation of grain size and accumulation of seed storage protein and lipids;Transcript_evidence=AK067943;ORF_evidence=Q0DL77;NIAS_FLcDNA=J013122C02;Manual Curation=June 25%2C 2020;Literature_PMID=32579349;Oryzabase=15300;Expression=AK067943;TENOR=Os05t0119200-01;KEGG=Os05t0119200-01;Subcellular location=nucleus (GO:0005634), membrane (GO:0016020), cytoplasm (GO:0005737)
Chr05	irgsp1_rep	five_prime_UTR	999106	999169	.	-	.	Parent=Os05t0119200-01
Chr05	irgsp1_rep	CDS	998883	999105	.	-	0	Parent=Os05t0119200-01
Chr05	irgsp1_rep	CDS	997828	998117	.	-	2	Parent=Os05t0119200-01
Chr05	irgsp1_rep	three_prime_UTR	997541	997827	.	-	.	Parent=Os05t0119200-01
Chr05	irgsp1_rep	mRNA	1000598	1002757	.	-	.	ID=Os05t0119300-01;Name=Os05t0119300-01;Locus_id=Os05g0119300;Note=Similar to ESTs AA754121.;Transcript_evidence=AK099495 (DDBJ%2C Best hit),AK071554 (DDBJ%2C Best hit);ORF_evidence=Q9LIX1 (UniProt);NIAS_FLcDNA=J013027I01,J023104E19;TENOR=Os05t0119300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	1002678	1002757	.	-	.	Parent=Os05t0119300-01
Chr05	irgsp1_rep	five_prime_UTR	1001896	1002003	.	-	.	Parent=Os05t0119300-01
Chr05	irgsp1_rep	CDS	1001662	1001895	.	-	0	Parent=Os05t0119300-01
Chr05	irgsp1_rep	CDS	1000775	1001101	.	-	0	Parent=Os05t0119300-01
Chr05	irgsp1_rep	three_prime_UTR	1000598	1000774	.	-	.	Parent=Os05t0119300-01
Chr05	irgsp1_rep	mRNA	1000602	1002756	.	-	.	ID=Os05t0119300-02;Name=Os05t0119300-02;Locus_id=Os05g0119300;Note=Similar to ESTs AA754121.;Transcript_evidence=AK060883 (DDBJ%2C Best hit);ORF_evidence=Q9LIX1 (UniProt);NIAS_FLcDNA=001-035-B01;TENOR=Os05t0119300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	1002678	1002756	.	-	.	Parent=Os05t0119300-02
Chr05	irgsp1_rep	five_prime_UTR	1001896	1002003	.	-	.	Parent=Os05t0119300-02
Chr05	irgsp1_rep	CDS	1001629	1001895	.	-	0	Parent=Os05t0119300-02
Chr05	irgsp1_rep	three_prime_UTR	1000602	1001628	.	-	.	Parent=Os05t0119300-02
Chr05	irgsp1_rep	mRNA	1000593	1002754	.	-	.	ID=Os05t0119300-03;Name=Os05t0119300-03;Locus_id=Os05g0119300;Note=Similar to ESTs AA754121.;Transcript_evidence=AK068289 (DDBJ%2C Best hit);ORF_evidence=Q9LIX1 (UniProt);NIAS_FLcDNA=J013147E18;TENOR=Os05t0119300-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	1001896	1002754	.	-	.	Parent=Os05t0119300-03
Chr05	irgsp1_rep	CDS	1001629	1001895	.	-	0	Parent=Os05t0119300-03
Chr05	irgsp1_rep	three_prime_UTR	1000593	1001628	.	-	.	Parent=Os05t0119300-03
Chr05	irgsp1_rep	mRNA	1003799	1007803	.	+	.	ID=Os05t0119350-01;Name=Os05t0119350-01;Locus_id=Os05g0119350;Note=Hypothetical protein.;Transcript_evidence=AK241617 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065186E04;TENOR=Os05t0119350-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	1003799	1003863	.	+	.	Parent=Os05t0119350-01
Chr05	irgsp1_rep	CDS	1003864	1004055	.	+	0	Parent=Os05t0119350-01
Chr05	irgsp1_rep	CDS	1006140	1006238	.	+	0	Parent=Os05t0119350-01
Chr05	irgsp1_rep	three_prime_UTR	1006239	1007803	.	+	.	Parent=Os05t0119350-01
Chr05	irgsp1_rep	mRNA	1004569	1008694	.	-	.	ID=Os05t0119400-00;Name=Os05t0119400-00;Locus_id=Os05g0119400;Note=KIP1-like domain containing protein.;Transcript_evidence=tplb0048b01 (Wheat FLcDNA);ORF_evidence=B9FM68 (UniProt);InterPro=KIP1-like (IPR011684);TENOR=Os05t0119400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	1008601	1008694	.	-	0	Parent=Os05t0119400-00
Chr05	irgsp1_rep	CDS	1006395	1007675	.	-	2	Parent=Os05t0119400-00
Chr05	irgsp1_rep	CDS	1005486	1005806	.	-	2	Parent=Os05t0119400-00
Chr05	irgsp1_rep	CDS	1004569	1005368	.	-	2	Parent=Os05t0119400-00
Chr05	irgsp1_rep	mRNA	1010651	1012854	.	+	.	ID=Os05t0119600-01;Name=Os05t0119600-01;Locus_id=Os05g0119600;Note=Similar to Protein binding protein.;Transcript_evidence=AK110829 (DDBJ%2C Best hit);ORF_evidence=B6U5N0 (UniProt);InterPro=Sister Chromatid cohesion protein DCC1 (IPR019128);NIAS_FLcDNA=002-171-H12;TENOR=Os05t0119600-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	1010651	1010699	.	+	.	Parent=Os05t0119600-01
Chr05	irgsp1_rep	CDS	1010700	1010905	.	+	0	Parent=Os05t0119600-01
Chr05	irgsp1_rep	CDS	1011398	1012312	.	+	1	Parent=Os05t0119600-01
Chr05	irgsp1_rep	CDS	1012526	1012628	.	+	1	Parent=Os05t0119600-01
Chr05	irgsp1_rep	three_prime_UTR	1012629	1012854	.	+	.	Parent=Os05t0119600-01
Chr05	irgsp1_rep	mRNA	1014025	1014658	.	-	.	ID=Os05t0119700-01;Name=Os05t0119700-01;Locus_id=Os05g0119700;Note=Conserved hypothetical protein.;Transcript_evidence=AK062482 (DDBJ%2C Best hit);ORF_evidence=Q9LIW7 (UniProt);NIAS_FLcDNA=001-103-G05;Expression=AK062482;TENOR=Os05t0119700-01;KEGG=Os05t0119700-01
Chr05	irgsp1_rep	CDS	1014356	1014658	.	-	0	Parent=Os05t0119700-01
Chr05	irgsp1_rep	three_prime_UTR	1014025	1014355	.	-	.	Parent=Os05t0119700-01
Chr05	irgsp1_rep	mRNA	1014301	1016657	.	+	.	ID=Os05t0119850-00;Name=Os05t0119850-00;Locus_id=Os05g0119850;Note=Hypothetical protein.;Transcript_evidence=tplb0022d09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0119850-00
Chr05	irgsp1_rep	five_prime_UTR	1014301	1014487	.	+	.	Parent=Os05t0119850-00
Chr05	irgsp1_rep	CDS	1014488	1014608	.	+	0	Parent=Os05t0119850-00
Chr05	irgsp1_rep	CDS	1014778	1015034	.	+	2	Parent=Os05t0119850-00
Chr05	irgsp1_rep	three_prime_UTR	1015035	1015114	.	+	.	Parent=Os05t0119850-00
Chr05	irgsp1_rep	three_prime_UTR	1015222	1016657	.	+	.	Parent=Os05t0119850-00
Chr05	irgsp1_rep	mRNA	1042096	1044138	.	-	.	ID=Os05t0120000-00;Name=Os05t0120000-00;Locus_id=Os05g0120000;CGSNL Gene Symbol=ABCG10;CGSNL Gene Name=ABC TRANSPORTER G FAMILY MEMBER 10;Oryzabase Gene Symbol Synonym(s)=OsABCG10;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 10;Note=Similar to Stigma/style ABC transporter.;Transcript_evidence=ab initio prediction;ORF_evidence=XP_002315262.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC-2 type transporter (IPR013525),ABC transporter%2C conserved site (IPR017871);Oryzabase=11987;TENOR=Os05t0120000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	1042096	1044138	.	-	0	Parent=Os05t0120000-00
Chr05	irgsp1_rep	mRNA	1042127	1044049	.	+	.	ID=Os05t0120050-00;Name=Os05t0120050-00;Locus_id=Os05g0120050;Note=Hypothetical protein.;Transcript_evidence=AK361241 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0120050-00
Chr05	irgsp1_rep	five_prime_UTR	1042127	1042128	.	+	.	Parent=Os05t0120050-00
Chr05	irgsp1_rep	CDS	1042129	1042258	.	+	0	Parent=Os05t0120050-00
Chr05	irgsp1_rep	CDS	1042367	1043058	.	+	2	Parent=Os05t0120050-00
Chr05	irgsp1_rep	three_prime_UTR	1043059	1044049	.	+	.	Parent=Os05t0120050-00
Chr05	irgsp1_rep	mRNA	1045879	1049359	.	-	.	ID=Os05t0120100-01;Name=Os05t0120100-01;Locus_id=Os05g0120100;CGSNL Gene Symbol=RSZP36;Oryzabase Gene Symbol Synonym(s)=Os-RS2Z36%2C OsRS2Z36%2C Os-RSZ36%2C OsRSZ36%2C RSZ36;Oryzabase Gene Name Synonym(s)=RS domain with zinc knuckle protein 36%2C RSZ subfamily protein 36%2C RS2Z subfamily protein 36;Note=Similar to Splicing factor RSZ33.;Transcript_evidence=AK103897 (DDBJ%2C Best hit);ORF_evidence=Q2QKC1 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA recognition motif domain (IPR000504),Zinc finger%2C CCHC-type (IPR001878),Nucleotide-binding%2C alpha-beta plait (IPR012677),Zinc finger%2C CCHC retroviral-type (IPR013084);NIAS_FLcDNA=J033150I04;Oryzabase=22746;Expression=AK103897;TENOR=Os05t0120100-01;KEGG=Os05t0120100-01
Chr05	irgsp1_rep	five_prime_UTR	1049296	1049359	.	-	.	Parent=Os05t0120100-01
Chr05	irgsp1_rep	five_prime_UTR	1048257	1048259	.	-	.	Parent=Os05t0120100-01
Chr05	irgsp1_rep	CDS	1048150	1048256	.	-	0	Parent=Os05t0120100-01
Chr05	irgsp1_rep	CDS	1047419	1047458	.	-	1	Parent=Os05t0120100-01
Chr05	irgsp1_rep	CDS	1047223	1047318	.	-	0	Parent=Os05t0120100-01
Chr05	irgsp1_rep	CDS	1046897	1047093	.	-	0	Parent=Os05t0120100-01
Chr05	irgsp1_rep	CDS	1046689	1046784	.	-	1	Parent=Os05t0120100-01
Chr05	irgsp1_rep	CDS	1046144	1046579	.	-	1	Parent=Os05t0120100-01
Chr05	irgsp1_rep	three_prime_UTR	1045879	1046143	.	-	.	Parent=Os05t0120100-01
Chr05	irgsp1_rep	mRNA	1045929	1047529	.	-	.	ID=Os05t0120100-02;Name=Os05t0120100-02;Locus_id=Os05g0120100;CGSNL Gene Symbol=RSZP36;Oryzabase Gene Symbol Synonym(s)=Os-RS2Z36%2C OsRS2Z36%2C Os-RSZ36%2C OsRSZ36%2C RSZ36;Oryzabase Gene Name Synonym(s)=RS domain with zinc knuckle protein 36%2C RSZ subfamily protein 36%2C RS2Z subfamily protein 36;Note=Similar to Splicing factor%2C arginine/serine-rich 6.;Transcript_evidence=AK060437 (DDBJ%2C Best hit);ORF_evidence=B6T453 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA recognition motif domain (IPR000504),Zinc finger%2C CCHC-type (IPR001878),Nucleotide-binding%2C alpha-beta plait (IPR012677),Zinc finger%2C CCHC retroviral-type (IPR013084);NIAS_FLcDNA=001-011-D02;Oryzabase=22746;Expression=AK060437;TENOR=Os05t0120100-02;KEGG=Os05t0120100-02
Chr05	irgsp1_rep	CDS	1047419	1047529	.	-	0	Parent=Os05t0120100-02
Chr05	irgsp1_rep	CDS	1047223	1047318	.	-	0	Parent=Os05t0120100-02
Chr05	irgsp1_rep	CDS	1046897	1047093	.	-	0	Parent=Os05t0120100-02
Chr05	irgsp1_rep	CDS	1046689	1046784	.	-	1	Parent=Os05t0120100-02
Chr05	irgsp1_rep	CDS	1046144	1046579	.	-	1	Parent=Os05t0120100-02
Chr05	irgsp1_rep	three_prime_UTR	1045929	1046143	.	-	.	Parent=Os05t0120100-02
Chr05	irgsp1_rep	mRNA	1050046	1052382	.	+	.	ID=Os05t0120200-01;Name=Os05t0120200-01;Locus_id=Os05g0120200;CGSNL Gene Symbol=ABCG11;CGSNL Gene Name=ABC TRANSPORTER G FAMILY MEMBER 11;Oryzabase Gene Symbol Synonym(s)=OsABCG11;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 11;Note=Similar to ATPase%2C coupled to transmembrane movement of substances.;Transcript_evidence=AK287932 (DDBJ%2C Best hit);ORF_evidence=XP_002315262.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC-2 type transporter (IPR013525),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=J065219O13;Oryzabase=11988;TENOR=Os05t0120200-01;KEGG=Os05t0120200-01
Chr05	irgsp1_rep	five_prime_UTR	1050046	1050096	.	+	.	Parent=Os05t0120200-01
Chr05	irgsp1_rep	CDS	1050097	1052196	.	+	0	Parent=Os05t0120200-01
Chr05	irgsp1_rep	three_prime_UTR	1052197	1052382	.	+	.	Parent=Os05t0120200-01
Chr05	irgsp1_rep	mRNA	1050054	1050380	.	-	.	ID=Os05t0120250-00;Name=Os05t0120250-00;Locus_id=Os05g0120250;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os05t0120250-00
Chr05	irgsp1_rep	CDS	1050054	1050380	.	-	0	Parent=Os05t0120250-00
Chr05	irgsp1_rep	mRNA	1060912	1061952	.	+	.	ID=Os05t0120300-01;Name=Os05t0120300-01;Locus_id=Os05g0120300;Note=Conserved hypothetical protein.;Transcript_evidence=AK109108 (DDBJ%2C Best hit);ORF_evidence=Q9LIW0 (UniProt);NIAS_FLcDNA=002-155-B10;Expression=AK109108;TENOR=Os05t0120300-01;KEGG=Os05t0120300-01
Chr05	irgsp1_rep	five_prime_UTR	1060912	1061011	.	+	.	Parent=Os05t0120300-01
Chr05	irgsp1_rep	CDS	1061012	1061674	.	+	0	Parent=Os05t0120300-01
Chr05	irgsp1_rep	three_prime_UTR	1061675	1061952	.	+	.	Parent=Os05t0120300-01
Chr05	irgsp1_rep	mRNA	1084753	1086017	.	+	.	ID=Os05t0120700-01;Name=Os05t0120700-01;Locus_id=Os05g0120700;Note=ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter family protein.;Transcript_evidence=AK062874 (DDBJ%2C Best hit);ORF_evidence=Q94IM6 (UniProt);InterPro=ATPase%2C P-type cation-transporter%2C C-terminal (IPR006068),ATPase%2C P-type%2C  transmembrane domain (IPR023298);NIAS_FLcDNA=001-108-C10;Expression=AK062874;TENOR=Os05t0120700-01;KEGG=Os05t0120700-01 (EC:3.6.3.8)
Chr05	irgsp1_rep	five_prime_UTR	1084753	1084754	.	+	.	Parent=Os05t0120700-01
Chr05	irgsp1_rep	CDS	1084755	1085021	.	+	0	Parent=Os05t0120700-01
Chr05	irgsp1_rep	CDS	1085124	1085702	.	+	0	Parent=Os05t0120700-01
Chr05	irgsp1_rep	three_prime_UTR	1085703	1086017	.	+	.	Parent=Os05t0120700-01
Chr05	irgsp1_rep	mRNA	1103397	1105229	.	+	.	ID=Os05t0120800-01;Name=Os05t0120800-01;Locus_id=Os05g0120800;Note=Protein of unknown function DUF2870 domain containing protein.;Transcript_evidence=AK066865 (DDBJ%2C Best hit);ORF_evidence=B9FGJ6 (UniProt);InterPro=Protein of unknown function DUF2870 (IPR021298);NIAS_FLcDNA=J013087A14;TENOR=Os05t0120800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	1103397	1103443	.	+	.	Parent=Os05t0120800-01
Chr05	irgsp1_rep	CDS	1103444	1103639	.	+	0	Parent=Os05t0120800-01
Chr05	irgsp1_rep	CDS	1103724	1103800	.	+	2	Parent=Os05t0120800-01
Chr05	irgsp1_rep	CDS	1104362	1104491	.	+	0	Parent=Os05t0120800-01
Chr05	irgsp1_rep	CDS	1104775	1104872	.	+	2	Parent=Os05t0120800-01
Chr05	irgsp1_rep	CDS	1104958	1104996	.	+	0	Parent=Os05t0120800-01
Chr05	irgsp1_rep	three_prime_UTR	1104997	1105229	.	+	.	Parent=Os05t0120800-01
Chr05	irgsp1_rep	mRNA	1108823	1110025	.	-	.	ID=Os05t0120900-01;Name=Os05t0120900-01;Locus_id=Os05g0120900;Note=Conserved hypothetical protein.;Transcript_evidence=AK121904 (DDBJ%2C Best hit);ORF_evidence=Q9LIV5 (UniProt);NIAS_FLcDNA=J033105I05;Expression=AK121904;TENOR=Os05t0120900-01;KEGG=Os05t0120900-01
Chr05	irgsp1_rep	five_prime_UTR	1109967	1110025	.	-	.	Parent=Os05t0120900-01
Chr05	irgsp1_rep	CDS	1109088	1109966	.	-	0	Parent=Os05t0120900-01
Chr05	irgsp1_rep	three_prime_UTR	1108823	1109087	.	-	.	Parent=Os05t0120900-01
Chr05	irgsp1_rep	mRNA	1115776	1118038	.	+	.	ID=Os05t0121000-01;Name=Os05t0121000-01;Locus_id=Os05g0121000;Note=Protein of unknown function DUF1218 family protein.;Transcript_evidence=AK071341 (DDBJ%2C Best hit);ORF_evidence=Q9LIV4 (UniProt);InterPro=Protein of unknown function DUF1218 (IPR009606);NIAS_FLcDNA=J023090B22;Expression=AK071341;TENOR=Os05t0121000-01;KEGG=Os05t0121000-01
Chr05	irgsp1_rep	five_prime_UTR	1115776	1115928	.	+	.	Parent=Os05t0121000-01
Chr05	irgsp1_rep	five_prime_UTR	1116418	1116422	.	+	.	Parent=Os05t0121000-01
Chr05	irgsp1_rep	CDS	1116423	1116515	.	+	0	Parent=Os05t0121000-01
Chr05	irgsp1_rep	CDS	1116816	1117030	.	+	0	Parent=Os05t0121000-01
Chr05	irgsp1_rep	CDS	1117426	1117702	.	+	1	Parent=Os05t0121000-01
Chr05	irgsp1_rep	three_prime_UTR	1117703	1118038	.	+	.	Parent=Os05t0121000-01
Chr05	irgsp1_rep	mRNA	1115866	1118059	.	+	.	ID=Os05t0121000-02;Name=Os05t0121000-02;Locus_id=Os05g0121000;Note=Protein of unknown function DUF1218 family protein.;Transcript_evidence=AK058867 (DDBJ%2C Best hit);ORF_evidence=Q9LIV4 (UniProt);InterPro=Protein of unknown function DUF1218 (IPR009606);NIAS_FLcDNA=001-006-A10;Expression=AK058867;TENOR=Os05t0121000-02;KEGG=Os05t0121000-02
Chr05	irgsp1_rep	five_prime_UTR	1115866	1115932	.	+	.	Parent=Os05t0121000-02
Chr05	irgsp1_rep	five_prime_UTR	1116418	1116422	.	+	.	Parent=Os05t0121000-02
Chr05	irgsp1_rep	CDS	1116423	1116515	.	+	0	Parent=Os05t0121000-02
Chr05	irgsp1_rep	CDS	1116816	1117030	.	+	0	Parent=Os05t0121000-02
Chr05	irgsp1_rep	CDS	1117426	1117702	.	+	1	Parent=Os05t0121000-02
Chr05	irgsp1_rep	three_prime_UTR	1117703	1118059	.	+	.	Parent=Os05t0121000-02
Chr05	irgsp1_rep	mRNA	1122713	1126860	.	+	.	ID=Os05t0121100-01;Name=Os05t0121100-01;Locus_id=Os05g0121100;Note=Conserved hypothetical protein.;Transcript_evidence=AK241317 (DDBJ%2C Best hit);ORF_evidence=Q9LIV3 (UniProt);NIAS_FLcDNA=J065142D11;TENOR=Os05t0121100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	1122713	1123777	.	+	.	Parent=Os05t0121100-01
Chr05	irgsp1_rep	CDS	1123778	1124019	.	+	0	Parent=Os05t0121100-01
Chr05	irgsp1_rep	CDS	1124614	1124830	.	+	1	Parent=Os05t0121100-01
Chr05	irgsp1_rep	three_prime_UTR	1124831	1126860	.	+	.	Parent=Os05t0121100-01
Chr05	irgsp1_rep	mRNA	1127011	1132408	.	-	.	ID=Os05t0121200-01;Name=Os05t0121200-01;Locus_id=Os05g0121200;Note=Similar to Transmembrane transport protein-like protein.;Transcript_evidence=AK066388 (DDBJ%2C Best hit),AK120088 (DDBJ%2C Best hit);ORF_evidence=NP_001150962.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Integral membrane protein TerC (IPR005496),Integral membrane protein TerC%2C riboswitch-linked (IPR022369);NIAS_FLcDNA=J013066G20,J013020M21;Expression=AK066388;TENOR=Os05t0121200-01;KEGG=Os05t0121200-01
Chr05	irgsp1_rep	five_prime_UTR	1132350	1132408	.	-	.	Parent=Os05t0121200-01
Chr05	irgsp1_rep	CDS	1132118	1132349	.	-	0	Parent=Os05t0121200-01
Chr05	irgsp1_rep	CDS	1131724	1131842	.	-	2	Parent=Os05t0121200-01
Chr05	irgsp1_rep	CDS	1131570	1131646	.	-	0	Parent=Os05t0121200-01
Chr05	irgsp1_rep	CDS	1131140	1131227	.	-	1	Parent=Os05t0121200-01
Chr05	irgsp1_rep	CDS	1130974	1131054	.	-	0	Parent=Os05t0121200-01
Chr05	irgsp1_rep	CDS	1130830	1130886	.	-	0	Parent=Os05t0121200-01
Chr05	irgsp1_rep	CDS	1130204	1130285	.	-	0	Parent=Os05t0121200-01
Chr05	irgsp1_rep	CDS	1129930	1129979	.	-	2	Parent=Os05t0121200-01
Chr05	irgsp1_rep	CDS	1129576	1129632	.	-	0	Parent=Os05t0121200-01
Chr05	irgsp1_rep	CDS	1129408	1129486	.	-	0	Parent=Os05t0121200-01
Chr05	irgsp1_rep	CDS	1128675	1128733	.	-	2	Parent=Os05t0121200-01
Chr05	irgsp1_rep	CDS	1128350	1128407	.	-	0	Parent=Os05t0121200-01
Chr05	irgsp1_rep	CDS	1128120	1128226	.	-	2	Parent=Os05t0121200-01
Chr05	irgsp1_rep	three_prime_UTR	1128101	1128119	.	-	.	Parent=Os05t0121200-01
Chr05	irgsp1_rep	three_prime_UTR	1127011	1127584	.	-	.	Parent=Os05t0121200-01
Chr05	irgsp1_rep	mRNA	1142017	1145752	.	+	.	ID=Os05t0121400-01;Name=Os05t0121400-01;Locus_id=Os05g0121400;Note=Conserved hypothetical protein.;Transcript_evidence=AK101631 (DDBJ%2C Best hit);ORF_evidence=B8AXC2 (UniProt);NIAS_FLcDNA=J033054O17;TENOR=Os05t0121400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	1142017	1142116	.	+	.	Parent=Os05t0121400-01
Chr05	irgsp1_rep	five_prime_UTR	1142239	1142411	.	+	.	Parent=Os05t0121400-01
Chr05	irgsp1_rep	five_prime_UTR	1142568	1142711	.	+	.	Parent=Os05t0121400-01
Chr05	irgsp1_rep	five_prime_UTR	1142957	1142991	.	+	.	Parent=Os05t0121400-01
Chr05	irgsp1_rep	CDS	1142992	1143108	.	+	0	Parent=Os05t0121400-01
Chr05	irgsp1_rep	CDS	1143554	1143649	.	+	0	Parent=Os05t0121400-01
Chr05	irgsp1_rep	three_prime_UTR	1143650	1143689	.	+	.	Parent=Os05t0121400-01
Chr05	irgsp1_rep	three_prime_UTR	1144032	1144311	.	+	.	Parent=Os05t0121400-01
Chr05	irgsp1_rep	three_prime_UTR	1144634	1144869	.	+	.	Parent=Os05t0121400-01
Chr05	irgsp1_rep	three_prime_UTR	1145000	1145143	.	+	.	Parent=Os05t0121400-01
Chr05	irgsp1_rep	three_prime_UTR	1145244	1145752	.	+	.	Parent=Os05t0121400-01
Chr05	irgsp1_rep	mRNA	1142027	1145744	.	+	.	ID=Os05t0121400-02;Name=Os05t0121400-02;Locus_id=Os05g0121400;Note=Similar to Transcription factor IIIA.;Transcript_evidence=AK099528 (DDBJ%2C Best hit);ORF_evidence=C0J7J9 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J013031H23;Expression=AK099528;TENOR=Os05t0121400-02;KEGG=Os05t0121400-02
Chr05	irgsp1_rep	five_prime_UTR	1142027	1142116	.	+	.	Parent=Os05t0121400-02
Chr05	irgsp1_rep	five_prime_UTR	1142239	1142240	.	+	.	Parent=Os05t0121400-02
Chr05	irgsp1_rep	CDS	1142241	1142411	.	+	0	Parent=Os05t0121400-02
Chr05	irgsp1_rep	CDS	1142568	1142711	.	+	0	Parent=Os05t0121400-02
Chr05	irgsp1_rep	CDS	1144032	1144311	.	+	0	Parent=Os05t0121400-02
Chr05	irgsp1_rep	CDS	1144634	1144869	.	+	2	Parent=Os05t0121400-02
Chr05	irgsp1_rep	CDS	1145000	1145143	.	+	0	Parent=Os05t0121400-02
Chr05	irgsp1_rep	CDS	1145244	1145411	.	+	0	Parent=Os05t0121400-02
Chr05	irgsp1_rep	three_prime_UTR	1145412	1145744	.	+	.	Parent=Os05t0121400-02
Chr05	irgsp1_rep	mRNA	1146334	1147106	.	-	.	ID=Os05t0121500-01;Name=Os05t0121500-01;Locus_id=Os05g0121500;Note=Similar to structural constituent of ribosome.;Transcript_evidence=AK242728 (DDBJ%2C Best hit);ORF_evidence=NP_001152061.1 (RefSeq);GO=Biological Process: ribosome biogenesis (GO:0042254),Cellular Component: intracellular (GO:0005622);InterPro=Ribosomal protein L10/acidic P0 (IPR001790);NIAS_FLcDNA=J090046D18;TENOR=Os05t0121500-01;KEGG=Os05t0121500-01
Chr05	irgsp1_rep	five_prime_UTR	1147042	1147106	.	-	.	Parent=Os05t0121500-01
Chr05	irgsp1_rep	CDS	1146466	1147041	.	-	0	Parent=Os05t0121500-01
Chr05	irgsp1_rep	three_prime_UTR	1146334	1146465	.	-	.	Parent=Os05t0121500-01
Chr05	irgsp1_rep	mRNA	1156300	1159703	.	-	.	ID=Os05t0121600-01;Name=Os05t0121600-01;Locus_id=Os05g0121600;RAP-DB Gene Symbol Synonym(s)=RSR1%2C OsTOE1%2C AP2/EREBP#090%2C AP2/EREBP90;RAP-DB Gene Name Synonym(s)=RICE STARCH REGULATOR 1%2C AP2/EREBP family transcription factor%2C APETALA2/ethylene-responsive element binding protein 90;CGSNL Gene Symbol=RSR1;CGSNL Gene Name=RICE STRACH REGULATOR 1;Oryzabase Gene Symbol Synonym(s)=AP2/EREBP#090%2C AP2/EREBP90%2C OsTOE1%2C TOE1%2C qHD5%2C AP2-1%2C AP2/EREBP/RSR1%2C OsRSR1%2C DLN130%2C DLN130a%2C DLN130b%2C OsDLN130%2C OsDLN130a%2C OsDLN130b;Oryzabase Gene Name Synonym(s)=AP2/EREBP family transcription factor%2C APETALA2/ethylene-responsive element binding protein 90%2C Rice Starch Regulator1%2C APETALA2-1%2C DLN repressor 130%2C DLN motif protein 130;Note=AP2/EREBP family transcription factor%2C Starch biosynthesis;Transcript_evidence=AY685117 (Genbank);ORF_evidence=Q2TQ34 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=AP2/ERF domain (IPR001471),DNA-binding%2C integrase-type (IPR016177);Manual Curation=November 24%2C 2017;Literature_PMID=26631749,20713616;Oryzabase=8906;TENOR=Os05t0121600-00
Chr05	irgsp1_rep	CDS	1159112	1159703	.	-	0	Parent=Os05t0121600-01
Chr05	irgsp1_rep	CDS	1158982	1159012	.	-	2	Parent=Os05t0121600-01
Chr05	irgsp1_rep	CDS	1158659	1158892	.	-	1	Parent=Os05t0121600-01
Chr05	irgsp1_rep	CDS	1158382	1158426	.	-	1	Parent=Os05t0121600-01
Chr05	irgsp1_rep	CDS	1158103	1158206	.	-	1	Parent=Os05t0121600-01
Chr05	irgsp1_rep	CDS	1157843	1157976	.	-	2	Parent=Os05t0121600-01
Chr05	irgsp1_rep	CDS	1157338	1157448	.	-	0	Parent=Os05t0121600-01
Chr05	irgsp1_rep	CDS	1156300	1156587	.	-	0	Parent=Os05t0121600-01
Chr05	irgsp1_rep	mRNA	1186091	1190655	.	-	.	ID=Os05t0121700-01;Name=Os05t0121700-01;Locus_id=Os05g0121700;CGSNL Gene Symbol=RAD51B;CGSNL Gene Name=DNA REPAIR PROTEIN RAD51B;Oryzabase Gene Symbol Synonym(s)=OsRAD51B%2C OsRad51B;Oryzabase Gene Name Synonym(s)=DNA repair protein RAD51B;Note=DNA repair and recombination%2C RecA-like domain containing protein.;Transcript_evidence=AK106510 (DDBJ%2C Best hit);ORF_evidence=NP_001031438.1 (RefSeq);GO=Biological Process: DNA metabolic process (GO:0006259),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP binding (GO:0005524),Molecular Function: DNA-dependent ATPase activity (GO:0008094),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),DNA recombination and repair protein Rad51%2C C-terminal (IPR013632),DNA recombination and repair protein%2C RecA-like (IPR016467),DNA recombination/repair protein RecA/RadB%2C ATP-binding domain (IPR020588);NIAS_FLcDNA=002-105-H03;Oryzabase=6790;Expression=AK106510;TENOR=Os05t0121700-01;KEGG=Os05t0121700-01
Chr05	irgsp1_rep	five_prime_UTR	1190553	1190655	.	-	.	Parent=Os05t0121700-01
Chr05	irgsp1_rep	CDS	1190469	1190552	.	-	0	Parent=Os05t0121700-01
Chr05	irgsp1_rep	CDS	1190275	1190388	.	-	0	Parent=Os05t0121700-01
Chr05	irgsp1_rep	CDS	1189977	1190123	.	-	0	Parent=Os05t0121700-01
Chr05	irgsp1_rep	CDS	1189044	1189147	.	-	0	Parent=Os05t0121700-01
Chr05	irgsp1_rep	CDS	1188895	1188958	.	-	1	Parent=Os05t0121700-01
Chr05	irgsp1_rep	CDS	1188722	1188777	.	-	0	Parent=Os05t0121700-01
Chr05	irgsp1_rep	CDS	1188341	1188421	.	-	1	Parent=Os05t0121700-01
Chr05	irgsp1_rep	CDS	1187441	1187506	.	-	1	Parent=Os05t0121700-01
Chr05	irgsp1_rep	CDS	1187234	1187325	.	-	1	Parent=Os05t0121700-01
Chr05	irgsp1_rep	CDS	1187039	1187155	.	-	2	Parent=Os05t0121700-01
Chr05	irgsp1_rep	CDS	1186461	1186604	.	-	2	Parent=Os05t0121700-01
Chr05	irgsp1_rep	CDS	1186337	1186359	.	-	2	Parent=Os05t0121700-01
Chr05	irgsp1_rep	three_prime_UTR	1186091	1186336	.	-	.	Parent=Os05t0121700-01
Chr05	irgsp1_rep	mRNA	1174481	1190593	.	-	.	ID=Os05t0121700-02;Name=Os05t0121700-02;Locus_id=Os05g0121700;CGSNL Gene Symbol=RAD51B;CGSNL Gene Name=DNA REPAIR PROTEIN RAD51B;Oryzabase Gene Symbol Synonym(s)=OsRAD51B%2C OsRad51B;Oryzabase Gene Name Synonym(s)=DNA repair protein RAD51B;Note=DNA repair and recombination%2C RecA-like domain containing protein.;Transcript_evidence=AK107571 (DDBJ%2C Best hit);ORF_evidence=NP_001031438.1 (RefSeq);GO=Biological Process: DNA metabolic process (GO:0006259),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP binding (GO:0005524),Molecular Function: DNA-dependent ATPase activity (GO:0008094),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),DNA recombination and repair protein Rad51%2C C-terminal (IPR013632),DNA recombination and repair protein%2C RecA-like (IPR016467),DNA recombination/repair protein RecA/RadB%2C ATP-binding domain (IPR020588);NIAS_FLcDNA=002-130-D03;Oryzabase=6790;Expression=AK107571;TENOR=Os05t0121700-02;KEGG=Os05t0121700-02
Chr05	irgsp1_rep	five_prime_UTR	1190553	1190593	.	-	.	Parent=Os05t0121700-02
Chr05	irgsp1_rep	CDS	1190469	1190552	.	-	0	Parent=Os05t0121700-02
Chr05	irgsp1_rep	CDS	1190275	1190388	.	-	0	Parent=Os05t0121700-02
Chr05	irgsp1_rep	CDS	1189977	1190123	.	-	0	Parent=Os05t0121700-02
Chr05	irgsp1_rep	CDS	1189044	1189147	.	-	0	Parent=Os05t0121700-02
Chr05	irgsp1_rep	CDS	1188895	1188958	.	-	1	Parent=Os05t0121700-02
Chr05	irgsp1_rep	CDS	1188722	1188777	.	-	0	Parent=Os05t0121700-02
Chr05	irgsp1_rep	CDS	1188341	1188421	.	-	1	Parent=Os05t0121700-02
Chr05	irgsp1_rep	CDS	1187441	1187506	.	-	1	Parent=Os05t0121700-02
Chr05	irgsp1_rep	CDS	1187234	1187325	.	-	1	Parent=Os05t0121700-02
Chr05	irgsp1_rep	CDS	1187039	1187155	.	-	2	Parent=Os05t0121700-02
Chr05	irgsp1_rep	CDS	1186461	1186604	.	-	2	Parent=Os05t0121700-02
Chr05	irgsp1_rep	CDS	1186337	1186359	.	-	2	Parent=Os05t0121700-02
Chr05	irgsp1_rep	three_prime_UTR	1186312	1186336	.	-	.	Parent=Os05t0121700-02
Chr05	irgsp1_rep	three_prime_UTR	1185746	1185821	.	-	.	Parent=Os05t0121700-02
Chr05	irgsp1_rep	three_prime_UTR	1185179	1185222	.	-	.	Parent=Os05t0121700-02
Chr05	irgsp1_rep	three_prime_UTR	1180875	1180998	.	-	.	Parent=Os05t0121700-02
Chr05	irgsp1_rep	three_prime_UTR	1175557	1175587	.	-	.	Parent=Os05t0121700-02
Chr05	irgsp1_rep	three_prime_UTR	1174652	1174781	.	-	.	Parent=Os05t0121700-02
Chr05	irgsp1_rep	three_prime_UTR	1174481	1174562	.	-	.	Parent=Os05t0121700-02
Chr05	irgsp1_rep	mRNA	1190748	1190803	.	+	.	ID=Os05t0121725-00;Name=Os05t0121725-00;Locus_id=Os05g0121725;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0121725-00
Chr05	irgsp1_rep	exon	1190748	1190803	.	+	.	Parent=Os05t0121725-00
Chr05	irgsp1_rep	mRNA	1192862	1193809	.	+	.	ID=Os05t0121750-00;Name=Os05t0121750-00;Locus_id=Os05g0121750;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A2XZT9 (UniProt);TENOR=Os05t0121750-00;KEGG=Os05t0121750-00
Chr05	irgsp1_rep	CDS	1192862	1193056	.	+	0	Parent=Os05t0121750-00
Chr05	irgsp1_rep	CDS	1193213	1193236	.	+	0	Parent=Os05t0121750-00
Chr05	irgsp1_rep	CDS	1193771	1193809	.	+	0	Parent=Os05t0121750-00
Chr05	irgsp1_rep	mRNA	1195081	1199226	.	+	.	ID=Os05t0121800-01;Name=Os05t0121800-01;Locus_id=Os05g0121800;Note=Conserved hypothetical protein.;Transcript_evidence=AK101222 (DDBJ%2C Best hit);ORF_evidence=B9FM75 (UniProt);NIAS_FLcDNA=J033031D02;Expression=AK101222;TENOR=Os05t0121800-01;KEGG=Os05t0121800-01
Chr05	irgsp1_rep	five_prime_UTR	1195081	1195213	.	+	.	Parent=Os05t0121800-01
Chr05	irgsp1_rep	CDS	1195214	1195310	.	+	0	Parent=Os05t0121800-01
Chr05	irgsp1_rep	CDS	1195477	1195677	.	+	2	Parent=Os05t0121800-01
Chr05	irgsp1_rep	CDS	1196274	1196555	.	+	2	Parent=Os05t0121800-01
Chr05	irgsp1_rep	CDS	1196636	1196670	.	+	2	Parent=Os05t0121800-01
Chr05	irgsp1_rep	CDS	1196755	1196844	.	+	0	Parent=Os05t0121800-01
Chr05	irgsp1_rep	CDS	1197627	1197756	.	+	0	Parent=Os05t0121800-01
Chr05	irgsp1_rep	CDS	1197829	1198403	.	+	2	Parent=Os05t0121800-01
Chr05	irgsp1_rep	CDS	1198530	1198961	.	+	0	Parent=Os05t0121800-01
Chr05	irgsp1_rep	three_prime_UTR	1198962	1199226	.	+	.	Parent=Os05t0121800-01
Chr05	irgsp1_rep	mRNA	1199247	1201035	.	+	.	ID=Os05t0121850-01;Name=Os05t0121850-01;Locus_id=Os05g0121850;Note=Hypothetical gene.;Transcript_evidence=AK287773 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065169L15;TENOR=Os05t0121850-01;KEGG=Os05t0121850-01
Chr05	irgsp1_rep	five_prime_UTR	1199247	1199816	.	+	.	Parent=Os05t0121850-01
Chr05	irgsp1_rep	five_prime_UTR	1199948	1200176	.	+	.	Parent=Os05t0121850-01
Chr05	irgsp1_rep	five_prime_UTR	1200288	1200373	.	+	.	Parent=Os05t0121850-01
Chr05	irgsp1_rep	CDS	1200374	1200391	.	+	0	Parent=Os05t0121850-01
Chr05	irgsp1_rep	CDS	1200496	1200948	.	+	0	Parent=Os05t0121850-01
Chr05	irgsp1_rep	three_prime_UTR	1200949	1201035	.	+	.	Parent=Os05t0121850-01
Chr05	irgsp1_rep	mRNA	1199358	1201038	.	-	.	ID=Os05t0121900-00;Name=Os05t0121900-00;Locus_id=Os05g0121900;Note=Similar to Phosphate/phosphoenolpyruvate translocator protein-like.;Transcript_evidence=FP098667 (DDBJ);ORF_evidence=B6UH66 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620),Domain of unknown function DUF250 (IPR004853);TENOR=Os05t0121900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	1200496	1201038	.	-	0	Parent=Os05t0121900-00
Chr05	irgsp1_rep	CDS	1200288	1200391	.	-	0	Parent=Os05t0121900-00
Chr05	irgsp1_rep	CDS	1199948	1200176	.	-	1	Parent=Os05t0121900-00
Chr05	irgsp1_rep	CDS	1199670	1199816	.	-	0	Parent=Os05t0121900-00
Chr05	irgsp1_rep	three_prime_UTR	1199549	1199669	.	-	.	Parent=Os05t0121900-00
Chr05	irgsp1_rep	three_prime_UTR	1199358	1199477	.	-	.	Parent=Os05t0121900-00
Chr05	irgsp1_rep	mRNA	1203946	1204615	.	-	.	ID=Os05t0122001-00;Name=Os05t0122001-00;Locus_id=Os05g0122001;Note=Conserved hypothetical protein.;Transcript_evidence=EU974026 (DDBJ);ORF_evidence=NP_001145235.1 (RefSeq);TENOR=Os05t0122001-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	1204600	1204615	.	-	.	Parent=Os05t0122001-00
Chr05	irgsp1_rep	CDS	1203946	1204599	.	-	0	Parent=Os05t0122001-00
Chr05	irgsp1_rep	mRNA	1222843	1230989	.	+	.	ID=Os05t0122400-00;Name=Os05t0122400-00;Locus_id=Os05g0122400;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q75L91 (UniProt);GO=Biological Process: protein modification process (GO:0006464),Cellular Component: intracellular (GO:0005622),Molecular Function: binding (GO:0005488),Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=HECT (IPR000569),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);TENOR=Os05t0122400-00;KEGG=Os05t0122400-00 (EC:6.3.2.19)
Chr05	irgsp1_rep	CDS	1222843	1223184	.	+	0	Parent=Os05t0122400-00
Chr05	irgsp1_rep	CDS	1224008	1224118	.	+	0	Parent=Os05t0122400-00
Chr05	irgsp1_rep	CDS	1224252	1224368	.	+	0	Parent=Os05t0122400-00
Chr05	irgsp1_rep	CDS	1224481	1224639	.	+	0	Parent=Os05t0122400-00
Chr05	irgsp1_rep	CDS	1225062	1225196	.	+	0	Parent=Os05t0122400-00
Chr05	irgsp1_rep	CDS	1225515	1225667	.	+	0	Parent=Os05t0122400-00
Chr05	irgsp1_rep	CDS	1225757	1225878	.	+	0	Parent=Os05t0122400-00
Chr05	irgsp1_rep	CDS	1225998	1226940	.	+	1	Parent=Os05t0122400-00
Chr05	irgsp1_rep	CDS	1227076	1227127	.	+	0	Parent=Os05t0122400-00
Chr05	irgsp1_rep	CDS	1227272	1228362	.	+	2	Parent=Os05t0122400-00
Chr05	irgsp1_rep	CDS	1228457	1228783	.	+	0	Parent=Os05t0122400-00
Chr05	irgsp1_rep	CDS	1228878	1228958	.	+	0	Parent=Os05t0122400-00
Chr05	irgsp1_rep	CDS	1229048	1229116	.	+	0	Parent=Os05t0122400-00
Chr05	irgsp1_rep	CDS	1229208	1229336	.	+	0	Parent=Os05t0122400-00
Chr05	irgsp1_rep	CDS	1229437	1229520	.	+	0	Parent=Os05t0122400-00
Chr05	irgsp1_rep	CDS	1229609	1229648	.	+	0	Parent=Os05t0122400-00
Chr05	irgsp1_rep	CDS	1230940	1230989	.	+	2	Parent=Os05t0122400-00
Chr05	irgsp1_rep	mRNA	1231013	1232703	.	-	.	ID=Os05t0122500-00;Name=Os05t0122500-00;Locus_id=Os05g0122500;Note=Similar to PWWP domain containing protein%2C expressed.;Transcript_evidence=FP095930 (DDBJ);ORF_evidence=Q53QK3 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=PWWP (IPR000313),RNA recognition motif domain (IPR000504);TENOR=Os05t0122500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	1232590	1232703	.	-	0	Parent=Os05t0122500-00
Chr05	irgsp1_rep	CDS	1231013	1232482	.	-	0	Parent=Os05t0122500-00
Chr05	irgsp1_rep	mRNA	1240299	1245247	.	+	.	ID=Os05t0122600-01;Name=Os05t0122600-01;Locus_id=Os05g0122600;Note=Prefoldin domain containing protein.;Transcript_evidence=AK101972 (DDBJ%2C Best hit);ORF_evidence=B8AXD2 (UniProt);NIAS_FLcDNA=J033076M10;Expression=AK101972;TENOR=Os05t0122600-01;KEGG=Os05t0122600-01
Chr05	irgsp1_rep	five_prime_UTR	1240299	1240452	.	+	.	Parent=Os05t0122600-01
Chr05	irgsp1_rep	five_prime_UTR	1241937	1241977	.	+	.	Parent=Os05t0122600-01
Chr05	irgsp1_rep	CDS	1241978	1241997	.	+	0	Parent=Os05t0122600-01
Chr05	irgsp1_rep	CDS	1242795	1242969	.	+	1	Parent=Os05t0122600-01
Chr05	irgsp1_rep	CDS	1243378	1244994	.	+	0	Parent=Os05t0122600-01
Chr05	irgsp1_rep	three_prime_UTR	1244995	1245247	.	+	.	Parent=Os05t0122600-01
Chr05	irgsp1_rep	mRNA	1240358	1245253	.	+	.	ID=Os05t0122600-02;Name=Os05t0122600-02;Locus_id=Os05g0122600;Note=Similar to Rid2 protein (Fragment).;Transcript_evidence=AK063920 (DDBJ%2C Best hit);ORF_evidence=Q3LFF8 (UniProt);NIAS_FLcDNA=001-123-B09;Expression=AK063920;TENOR=Os05t0122600-02;KEGG=Os05t0122600-02
Chr05	irgsp1_rep	five_prime_UTR	1240358	1240452	.	+	.	Parent=Os05t0122600-02
Chr05	irgsp1_rep	five_prime_UTR	1241937	1241977	.	+	.	Parent=Os05t0122600-02
Chr05	irgsp1_rep	CDS	1241978	1241997	.	+	0	Parent=Os05t0122600-02
Chr05	irgsp1_rep	CDS	1242795	1242969	.	+	1	Parent=Os05t0122600-02
Chr05	irgsp1_rep	CDS	1243381	1244994	.	+	0	Parent=Os05t0122600-02
Chr05	irgsp1_rep	three_prime_UTR	1244995	1245253	.	+	.	Parent=Os05t0122600-02
Chr05	irgsp1_rep	mRNA	1243359	1244985	.	-	.	ID=Os05t0122650-00;Name=Os05t0122650-00;Locus_id=Os05g0122650;Note=Hypothetical gene.;Transcript_evidence=EU968530 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0122650-00;KEGG=Os05t0122650-00
Chr05	irgsp1_rep	CDS	1244287	1244985	.	-	0	Parent=Os05t0122650-00
Chr05	irgsp1_rep	three_prime_UTR	1243948	1244286	.	-	.	Parent=Os05t0122650-00
Chr05	irgsp1_rep	three_prime_UTR	1243359	1243845	.	-	.	Parent=Os05t0122650-00
Chr05	irgsp1_rep	mRNA	1246357	1247008	.	-	.	ID=Os05t0122700-01;Name=Os05t0122700-01;Locus_id=Os05g0122700;Oryzabase Gene Symbol Synonym(s)=OsRCI2-7;Oryzabase Gene Name Synonym(s)=rare cold-inducible 2-7;Note=Similar to Low-temperature induced protein lt101.2.;Transcript_evidence=AK241639 (DDBJ%2C Best hit);ORF_evidence=XP_002311114.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Proteolipid membrane potential modulator (IPR000612);NIAS_FLcDNA=J065188N05;Oryzabase=18171;TENOR=Os05t0122700-01;KEGG=Os05t0122700-01
Chr05	irgsp1_rep	five_prime_UTR	1246875	1247008	.	-	.	Parent=Os05t0122700-01
Chr05	irgsp1_rep	CDS	1246794	1246874	.	-	0	Parent=Os05t0122700-01
Chr05	irgsp1_rep	CDS	1246638	1246721	.	-	0	Parent=Os05t0122700-01
Chr05	irgsp1_rep	three_prime_UTR	1246357	1246637	.	-	.	Parent=Os05t0122700-01
Chr05	irgsp1_rep	mRNA	1248228	1248495	.	+	.	ID=Os05t0122750-00;Name=Os05t0122750-00;Locus_id=Os05g0122750;Note=Similar to ribosomal protein S7.;Transcript_evidence=EU942957 (DDBJ);ORF_evidence=YP_588377.1 (RefSeq);TENOR=Os05t0122750-00
Chr05	irgsp1_rep	CDS	1248228	1248341	.	+	0	Parent=Os05t0122750-00
Chr05	irgsp1_rep	three_prime_UTR	1248342	1248495	.	+	.	Parent=Os05t0122750-00
Chr05	irgsp1_rep	mRNA	1254602	1258729	.	+	.	ID=Os05t0122800-01;Name=Os05t0122800-01;Locus_id=Os05g0122800;CGSNL Gene Symbol=TET7;CGSNL Gene Name=TETRASPANIN 7;Oryzabase Gene Symbol Synonym(s)=OsTET7;Oryzabase Gene Name Synonym(s)=tetraspanin 7;Note=Tetraspanin domain containing protein.;Transcript_evidence=AK068516 (DDBJ%2C Best hit);ORF_evidence=B6T9C5 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Tetraspanin%2C subgroup (IPR000301),Tetraspanin (IPR018499);NIAS_FLcDNA=J013151M14;Oryzabase=20312;Expression=AK068516;TENOR=Os05t0122800-01;KEGG=Os05t0122800-01
Chr05	irgsp1_rep	five_prime_UTR	1254602	1254799	.	+	.	Parent=Os05t0122800-01
Chr05	irgsp1_rep	CDS	1254800	1255333	.	+	0	Parent=Os05t0122800-01
Chr05	irgsp1_rep	CDS	1258007	1258357	.	+	0	Parent=Os05t0122800-01
Chr05	irgsp1_rep	three_prime_UTR	1258358	1258729	.	+	.	Parent=Os05t0122800-01
Chr05	irgsp1_rep	mRNA	1254653	1256835	.	+	.	ID=Os05t0122800-02;Name=Os05t0122800-02;Locus_id=Os05g0122800;CGSNL Gene Symbol=TET7;CGSNL Gene Name=TETRASPANIN 7;Oryzabase Gene Symbol Synonym(s)=OsTET7;Oryzabase Gene Name Synonym(s)=tetraspanin 7;Note=Similar to senescence-associated protein.;Transcript_evidence=AK101005 (DDBJ%2C Best hit);ORF_evidence=NP_001148512.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Tetraspanin%2C subgroup (IPR000301),Tetraspanin (IPR018499);NIAS_FLcDNA=J023147M12;Oryzabase=20312;Expression=AK101005;TENOR=Os05t0122800-02;KEGG=Os05t0122800-02
Chr05	irgsp1_rep	five_prime_UTR	1254653	1254799	.	+	.	Parent=Os05t0122800-02
Chr05	irgsp1_rep	CDS	1254800	1255399	.	+	0	Parent=Os05t0122800-02
Chr05	irgsp1_rep	three_prime_UTR	1255400	1256835	.	+	.	Parent=Os05t0122800-02
Chr05	irgsp1_rep	mRNA	1256631	1258695	.	+	.	ID=Os05t0122800-03;Name=Os05t0122800-03;Locus_id=Os05g0122800;CGSNL Gene Symbol=TET7;CGSNL Gene Name=TETRASPANIN 7;Oryzabase Gene Symbol Synonym(s)=OsTET7;Oryzabase Gene Name Synonym(s)=tetraspanin 7;Note=Tetraspanin domain containing protein.;Transcript_evidence=AK065567 (DDBJ%2C Best hit);ORF_evidence=B6T9C5 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Tetraspanin (IPR018499);NIAS_FLcDNA=J013033D20;Oryzabase=20312;Expression=AK065567;TENOR=Os05t0122800-03;KEGG=Os05t0122800-03
Chr05	irgsp1_rep	five_prime_UTR	1256631	1257997	.	+	.	Parent=Os05t0122800-03
Chr05	irgsp1_rep	CDS	1257998	1258357	.	+	0	Parent=Os05t0122800-03
Chr05	irgsp1_rep	three_prime_UTR	1258358	1258695	.	+	.	Parent=Os05t0122800-03
Chr05	irgsp1_rep	mRNA	1259271	1261993	.	-	.	ID=Os05t0122900-01;Name=Os05t0122900-01;Locus_id=Os05g0122900;Oryzabase Gene Symbol Synonym(s)=OsBLE1;Oryzabase Gene Name Synonym(s)=BLE1 protein%2C BL-enhanced gene 1;Note=BLE1 protein.;Transcript_evidence=AK104970 (DDBJ%2C Best hit),AK071296 (DDBJ%2C Best hit),AK099375 (DDBJ%2C Best hit);ORF_evidence=Q8S937 (UniProt);NIAS_FLcDNA=001-121-F11,J023084I21,J033056C02;Oryzabase=15750;TENOR=Os05t0122900-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	1261914	1261993	.	-	.	Parent=Os05t0122900-01
Chr05	irgsp1_rep	CDS	1261807	1261913	.	-	0	Parent=Os05t0122900-01
Chr05	irgsp1_rep	CDS	1260445	1260490	.	-	1	Parent=Os05t0122900-01
Chr05	irgsp1_rep	CDS	1260306	1260368	.	-	0	Parent=Os05t0122900-01
Chr05	irgsp1_rep	CDS	1259550	1259579	.	-	0	Parent=Os05t0122900-01
Chr05	irgsp1_rep	three_prime_UTR	1259271	1259549	.	-	.	Parent=Os05t0122900-01
Chr05	irgsp1_rep	mRNA	1266639	1267076	.	-	.	ID=Os05t0123000-00;Name=Os05t0123000-00;Locus_id=Os05g0123000;Note=Similar to Lateral organ boundaries domain 1.;Transcript_evidence=ab initio prediction;ORF_evidence=E7DP38 (UniProt);InterPro=Lateral organ boundaries%2C LOB (IPR004883);TENOR=Os05t0123000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	1266639	1267076	.	-	0	Parent=Os05t0123000-00
Chr05	irgsp1_rep	mRNA	1279205	1285411	.	+	.	ID=Os05t0123100-01;Name=Os05t0123100-01;Locus_id=Os05g0123100;Oryzabase Gene Symbol Synonym(s)=OsGT43A%2C GT43A;Oryzabase Gene Name Synonym(s)=glycosyltransferase family GT43 member A;Note=Glycosyl transferase%2C family 43 protein.;Transcript_evidence=AK120892 (DDBJ%2C Best hit);ORF_evidence=Q50HW1 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity (GO:0015018);InterPro=Glycosyl transferase%2C family 43 (IPR005027);NIAS_FLcDNA=J023029N22;Oryzabase=15258;Expression=AK120892;TENOR=Os05t0123100-01;KEGG=Os05t0123100-01
Chr05	irgsp1_rep	five_prime_UTR	1279205	1279518	.	+	.	Parent=Os05t0123100-01
Chr05	irgsp1_rep	CDS	1279519	1280192	.	+	0	Parent=Os05t0123100-01
Chr05	irgsp1_rep	CDS	1283339	1283624	.	+	1	Parent=Os05t0123100-01
Chr05	irgsp1_rep	CDS	1284907	1285062	.	+	0	Parent=Os05t0123100-01
Chr05	irgsp1_rep	three_prime_UTR	1285063	1285411	.	+	.	Parent=Os05t0123100-01
Chr05	irgsp1_rep	mRNA	1279392	1280215	.	-	.	ID=Os05t0123150-00;Name=Os05t0123150-00;Locus_id=Os05g0123150;Note=Hypothetical conserved gene.;Transcript_evidence=BT034702 (DDBJ);ORF_evidence=B9FM80 (UniProt);TENOR=Os05t0123150-00;KEGG=Os05t0123150-00
Chr05	irgsp1_rep	five_prime_UTR	1280154	1280215	.	-	.	Parent=Os05t0123150-00
Chr05	irgsp1_rep	CDS	1279392	1280153	.	-	0	Parent=Os05t0123150-00
Chr05	irgsp1_rep	mRNA	1291479	1295477	.	+	.	ID=Os05t0123200-01;Name=Os05t0123200-01;Locus_id=Os05g0123200;Note=Similar to IQD1.;Transcript_evidence=AK065809 (DDBJ%2C Best hit);ORF_evidence=B4F9U2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);NIAS_FLcDNA=J013036H14;Expression=AK065809;TENOR=Os05t0123200-01;KEGG=Os05t0123200-01
Chr05	irgsp1_rep	five_prime_UTR	1291479	1291968	.	+	.	Parent=Os05t0123200-01
Chr05	irgsp1_rep	five_prime_UTR	1292064	1292077	.	+	.	Parent=Os05t0123200-01
Chr05	irgsp1_rep	CDS	1292078	1292152	.	+	0	Parent=Os05t0123200-01
Chr05	irgsp1_rep	CDS	1292658	1292945	.	+	0	Parent=Os05t0123200-01
Chr05	irgsp1_rep	CDS	1293857	1294072	.	+	0	Parent=Os05t0123200-01
Chr05	irgsp1_rep	CDS	1294261	1294380	.	+	0	Parent=Os05t0123200-01
Chr05	irgsp1_rep	CDS	1294478	1295203	.	+	0	Parent=Os05t0123200-01
Chr05	irgsp1_rep	three_prime_UTR	1295204	1295477	.	+	.	Parent=Os05t0123200-01
Chr05	irgsp1_rep	mRNA	1291859	1295432	.	+	.	ID=Os05t0123200-02;Name=Os05t0123200-02;Locus_id=Os05g0123200;Note=IQ calmodulin-binding region domain containing protein.;Transcript_evidence=AK066395 (DDBJ%2C Best hit);ORF_evidence=B4F9U2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);NIAS_FLcDNA=J013064B18;Expression=AK066395;TENOR=Os05t0123200-02;KEGG=Os05t0123200-02
Chr05	irgsp1_rep	five_prime_UTR	1291859	1291968	.	+	.	Parent=Os05t0123200-02
Chr05	irgsp1_rep	five_prime_UTR	1292064	1292077	.	+	.	Parent=Os05t0123200-02
Chr05	irgsp1_rep	CDS	1292078	1292152	.	+	0	Parent=Os05t0123200-02
Chr05	irgsp1_rep	CDS	1292658	1292945	.	+	0	Parent=Os05t0123200-02
Chr05	irgsp1_rep	CDS	1293857	1294072	.	+	0	Parent=Os05t0123200-02
Chr05	irgsp1_rep	CDS	1294261	1294380	.	+	0	Parent=Os05t0123200-02
Chr05	irgsp1_rep	CDS	1294478	1294673	.	+	0	Parent=Os05t0123200-02
Chr05	irgsp1_rep	CDS	1294754	1294773	.	+	2	Parent=Os05t0123200-02
Chr05	irgsp1_rep	three_prime_UTR	1294774	1295432	.	+	.	Parent=Os05t0123200-02
Chr05	irgsp1_rep	mRNA	1291892	1295432	.	+	.	ID=Os05t0123200-03;Name=Os05t0123200-03;Locus_id=Os05g0123200;Note=Similar to IQD1.;Transcript_evidence=AK105073 (DDBJ%2C Best hit);ORF_evidence=B4F9U2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);NIAS_FLcDNA=001-045-E09;Expression=AK105073;TENOR=Os05t0123200-03;KEGG=Os05t0123200-03
Chr05	irgsp1_rep	five_prime_UTR	1291892	1291968	.	+	.	Parent=Os05t0123200-03
Chr05	irgsp1_rep	five_prime_UTR	1292064	1292077	.	+	.	Parent=Os05t0123200-03
Chr05	irgsp1_rep	CDS	1292078	1292152	.	+	0	Parent=Os05t0123200-03
Chr05	irgsp1_rep	CDS	1292658	1292945	.	+	0	Parent=Os05t0123200-03
Chr05	irgsp1_rep	CDS	1293857	1294072	.	+	0	Parent=Os05t0123200-03
Chr05	irgsp1_rep	CDS	1294261	1294380	.	+	0	Parent=Os05t0123200-03
Chr05	irgsp1_rep	CDS	1294478	1295203	.	+	0	Parent=Os05t0123200-03
Chr05	irgsp1_rep	three_prime_UTR	1295204	1295432	.	+	.	Parent=Os05t0123200-03
Chr05	irgsp1_rep	mRNA	1295746	1298699	.	-	.	ID=Os05t0123300-00;Name=Os05t0123300-00;Locus_id=Os05g0123300;Note=Defects-in-morphology protein 1-like%2C mitochondrial domain containing protein.;Transcript_evidence=AK365265 (DDBJ);ORF_evidence=A2XZV5 (UniProt);InterPro=Defects-in-morphology protein 1-like%2C mitochondrial (IPR019190);TENOR=Os05t0123300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	1298385	1298699	.	-	0	Parent=Os05t0123300-00
Chr05	irgsp1_rep	CDS	1298205	1298309	.	-	0	Parent=Os05t0123300-00
Chr05	irgsp1_rep	CDS	1297762	1297883	.	-	0	Parent=Os05t0123300-00
Chr05	irgsp1_rep	CDS	1297466	1297615	.	-	1	Parent=Os05t0123300-00
Chr05	irgsp1_rep	CDS	1296593	1296746	.	-	1	Parent=Os05t0123300-00
Chr05	irgsp1_rep	CDS	1296268	1296344	.	-	0	Parent=Os05t0123300-00
Chr05	irgsp1_rep	CDS	1295945	1296155	.	-	1	Parent=Os05t0123300-00
Chr05	irgsp1_rep	three_prime_UTR	1295746	1295944	.	-	.	Parent=Os05t0123300-00
Chr05	irgsp1_rep	mRNA	1300445	1302199	.	-	.	ID=Os05t0123400-01;Name=Os05t0123400-01;Locus_id=Os05g0123400;Oryzabase Gene Symbol Synonym(s)=OsFbox244%2C Os_F0497;Oryzabase Gene Name Synonym(s)=F-box protein 244;Note=Protein of unknown function DUF295 domain containing protein.;Transcript_evidence=AK069521 (DDBJ%2C Best hit);ORF_evidence=B9FGK5 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023022O05;Oryzabase=17029;TENOR=Os05t0123400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	1302107	1302199	.	-	.	Parent=Os05t0123400-01
Chr05	irgsp1_rep	CDS	1302075	1302106	.	-	0	Parent=Os05t0123400-01
Chr05	irgsp1_rep	CDS	1300670	1301996	.	-	1	Parent=Os05t0123400-01
Chr05	irgsp1_rep	three_prime_UTR	1300445	1300669	.	-	.	Parent=Os05t0123400-01
Chr05	irgsp1_rep	mRNA	1348492	1354679	.	-	.	ID=Os05t0124000-01;Name=Os05t0124000-01;Locus_id=Os05g0124000;Oryzabase Gene Symbol Synonym(s)=OsSTA138;Note=Ankyrin repeat domain containing protein.;Transcript_evidence=AK105314 (DDBJ%2C Best hit);ORF_evidence=B9FM84 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=001-117-D11;Oryzabase=19427;TENOR=Os05t0124000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	1354655	1354679	.	-	.	Parent=Os05t0124000-01
Chr05	irgsp1_rep	CDS	1354586	1354654	.	-	0	Parent=Os05t0124000-01
Chr05	irgsp1_rep	CDS	1352494	1352685	.	-	0	Parent=Os05t0124000-01
Chr05	irgsp1_rep	CDS	1352321	1352395	.	-	0	Parent=Os05t0124000-01
Chr05	irgsp1_rep	CDS	1351590	1352096	.	-	0	Parent=Os05t0124000-01
Chr05	irgsp1_rep	CDS	1350946	1351326	.	-	0	Parent=Os05t0124000-01
Chr05	irgsp1_rep	CDS	1350659	1350756	.	-	0	Parent=Os05t0124000-01
Chr05	irgsp1_rep	CDS	1350512	1350561	.	-	1	Parent=Os05t0124000-01
Chr05	irgsp1_rep	CDS	1350364	1350425	.	-	2	Parent=Os05t0124000-01
Chr05	irgsp1_rep	CDS	1348973	1349296	.	-	0	Parent=Os05t0124000-01
Chr05	irgsp1_rep	three_prime_UTR	1348961	1348972	.	-	.	Parent=Os05t0124000-01
Chr05	irgsp1_rep	three_prime_UTR	1348492	1348848	.	-	.	Parent=Os05t0124000-01
Chr05	irgsp1_rep	mRNA	1397305	1404503	.	-	.	ID=Os05t0124600-01;Name=Os05t0124600-01;Locus_id=Os05g0124600;Note=Ankyrin repeat domain containing protein.;Transcript_evidence=AK242936 (DDBJ%2C Best hit);ORF_evidence=B9FM85 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J090086O21;TENOR=Os05t0124600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	1404347	1404503	.	-	.	Parent=Os05t0124600-01
Chr05	irgsp1_rep	five_prime_UTR	1402797	1402798	.	-	.	Parent=Os05t0124600-01
Chr05	irgsp1_rep	CDS	1402608	1402796	.	-	0	Parent=Os05t0124600-01
Chr05	irgsp1_rep	CDS	1402438	1402512	.	-	0	Parent=Os05t0124600-01
Chr05	irgsp1_rep	CDS	1401779	1402285	.	-	0	Parent=Os05t0124600-01
Chr05	irgsp1_rep	CDS	1401021	1401401	.	-	0	Parent=Os05t0124600-01
Chr05	irgsp1_rep	CDS	1399846	1399943	.	-	0	Parent=Os05t0124600-01
Chr05	irgsp1_rep	CDS	1399696	1399745	.	-	1	Parent=Os05t0124600-01
Chr05	irgsp1_rep	CDS	1399541	1399599	.	-	2	Parent=Os05t0124600-01
Chr05	irgsp1_rep	CDS	1398056	1398376	.	-	0	Parent=Os05t0124600-01
Chr05	irgsp1_rep	three_prime_UTR	1398048	1398055	.	-	.	Parent=Os05t0124600-01
Chr05	irgsp1_rep	three_prime_UTR	1397305	1397947	.	-	.	Parent=Os05t0124600-01
Chr05	irgsp1_rep	mRNA	1417145	1419555	.	-	.	ID=Os05t0124800-01;Name=Os05t0124800-01;Locus_id=Os05g0124800;Note=Hypothetical conserved gene.;Transcript_evidence=AK240985 (DDBJ%2C Best hit);ORF_evidence=NP_001174191.1 (RefSeq);NIAS_FLcDNA=J065050I11;TENOR=Os05t0124800-01;KEGG=Os05t0124800-01
Chr05	irgsp1_rep	five_prime_UTR	1419364	1419555	.	-	.	Parent=Os05t0124800-01
Chr05	irgsp1_rep	CDS	1419266	1419363	.	-	0	Parent=Os05t0124800-01
Chr05	irgsp1_rep	CDS	1419119	1419165	.	-	1	Parent=Os05t0124800-01
Chr05	irgsp1_rep	CDS	1418971	1419032	.	-	2	Parent=Os05t0124800-01
Chr05	irgsp1_rep	CDS	1417763	1418101	.	-	0	Parent=Os05t0124800-01
Chr05	irgsp1_rep	three_prime_UTR	1417754	1417762	.	-	.	Parent=Os05t0124800-01
Chr05	irgsp1_rep	three_prime_UTR	1417145	1417497	.	-	.	Parent=Os05t0124800-01
Chr05	irgsp1_rep	mRNA	1426941	1438465	.	+	.	ID=Os05t0125000-01;Name=Os05t0125000-01;Locus_id=Os05g0125000;RAP-DB Gene Symbol Synonym(s)=SIZ1%2C OsSIZ1;RAP-DB Gene Name Synonym(s)=SAP and MIZ 1%2C SUMO ligase Siz1%2C Siz/PIAS-type SUMO ligase 1%2C SIZ/PIAS-type SUMO E3 ligase 1%2C E3 SUMO-protein ligase SIZ1;CGSNL Gene Symbol=SIZ1;Oryzabase Gene Symbol Synonym(s)=OsSIZ1%2C OsSIZ1.1%2C OsSIZ1.2%2C OsSIZ1.3%2C DLN131%2C OsDLN131;Oryzabase Gene Name Synonym(s)=SAP and MIZ 1%2C SUMO ligase Siz1%2C Siz/PIAS-type SUMO ligase 1%2C SIZ/PIAS-type SUMO E3 ligase 1%2C E3 SUMO-protein ligase SIZ1%2C DLN repressor 131%2C DLN motif protein 131;Note=SUMO (small ubiquitin-related modifier) E3-ligase%2C Abiotic stress response%2C Stress adaptation;Transcript_evidence=AK105290;ORF_evidence=Q6L4L4;GO=Biological Process: cell growth (GO:0016049),Biological Process: protein sumoylation (GO:0016925),Biological Process: cellular response to extracellular stimulus (GO:0031668),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: SUMO transferase activity (GO:0019789),Cellular Component: nucleus (GO:0005634);InterPro=E3 SUMO-protein ligase SIZ1%2C plant (IPR031141),SAP domain (IPR003034),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C PHD-finger (IPR019787),Zinc finger%2C MIZ-type (IPR004181),Zinc finger%2C PHD-type%2C conserved site (IPR019786);NIAS_FLcDNA=001-116-F09;Manual Curation=February 26%2C 2016;Literature_PMID=20561251;Oryzabase=9365;Expression=AK105290;TENOR=Os05t0125000-01;KEGG=Os05t0125000-01
Chr05	irgsp1_rep	five_prime_UTR	1426941	1427189	.	+	.	Parent=Os05t0125000-01
Chr05	irgsp1_rep	CDS	1427190	1427216	.	+	0	Parent=Os05t0125000-01
Chr05	irgsp1_rep	CDS	1427935	1428015	.	+	0	Parent=Os05t0125000-01
Chr05	irgsp1_rep	CDS	1428257	1428299	.	+	0	Parent=Os05t0125000-01
Chr05	irgsp1_rep	CDS	1428503	1428581	.	+	2	Parent=Os05t0125000-01
Chr05	irgsp1_rep	CDS	1428690	1428849	.	+	1	Parent=Os05t0125000-01
Chr05	irgsp1_rep	CDS	1428964	1429091	.	+	0	Parent=Os05t0125000-01
Chr05	irgsp1_rep	CDS	1429533	1429601	.	+	1	Parent=Os05t0125000-01
Chr05	irgsp1_rep	CDS	1430195	1430282	.	+	1	Parent=Os05t0125000-01
Chr05	irgsp1_rep	CDS	1430915	1430990	.	+	0	Parent=Os05t0125000-01
Chr05	irgsp1_rep	CDS	1431166	1431239	.	+	2	Parent=Os05t0125000-01
Chr05	irgsp1_rep	CDS	1433034	1433141	.	+	0	Parent=Os05t0125000-01
Chr05	irgsp1_rep	CDS	1434182	1434343	.	+	0	Parent=Os05t0125000-01
Chr05	irgsp1_rep	CDS	1434578	1434682	.	+	0	Parent=Os05t0125000-01
Chr05	irgsp1_rep	CDS	1434846	1434926	.	+	0	Parent=Os05t0125000-01
Chr05	irgsp1_rep	CDS	1435002	1436202	.	+	0	Parent=Os05t0125000-01
Chr05	irgsp1_rep	CDS	1437053	1437198	.	+	2	Parent=Os05t0125000-01
Chr05	irgsp1_rep	three_prime_UTR	1437199	1437405	.	+	.	Parent=Os05t0125000-01
Chr05	irgsp1_rep	three_prime_UTR	1438179	1438465	.	+	.	Parent=Os05t0125000-01
Chr05	irgsp1_rep	mRNA	1428965	1436189	.	-	.	ID=Os05t0125050-00;Name=Os05t0125050-00;Locus_id=Os05g0125050;Note=Hypothetical protein.;Transcript_evidence=tplb0034c14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0125050-00
Chr05	irgsp1_rep	five_prime_UTR	1435984	1436189	.	-	.	Parent=Os05t0125050-00
Chr05	irgsp1_rep	CDS	1435630	1435983	.	-	0	Parent=Os05t0125050-00
Chr05	irgsp1_rep	three_prime_UTR	1435487	1435629	.	-	.	Parent=Os05t0125050-00
Chr05	irgsp1_rep	three_prime_UTR	1435332	1435417	.	-	.	Parent=Os05t0125050-00
Chr05	irgsp1_rep	three_prime_UTR	1435003	1435278	.	-	.	Parent=Os05t0125050-00
Chr05	irgsp1_rep	three_prime_UTR	1434842	1434927	.	-	.	Parent=Os05t0125050-00
Chr05	irgsp1_rep	three_prime_UTR	1434568	1434678	.	-	.	Parent=Os05t0125050-00
Chr05	irgsp1_rep	three_prime_UTR	1434179	1434331	.	-	.	Parent=Os05t0125050-00
Chr05	irgsp1_rep	three_prime_UTR	1433042	1433136	.	-	.	Parent=Os05t0125050-00
Chr05	irgsp1_rep	three_prime_UTR	1431170	1431253	.	-	.	Parent=Os05t0125050-00
Chr05	irgsp1_rep	three_prime_UTR	1430913	1430993	.	-	.	Parent=Os05t0125050-00
Chr05	irgsp1_rep	three_prime_UTR	1430153	1430276	.	-	.	Parent=Os05t0125050-00
Chr05	irgsp1_rep	three_prime_UTR	1428965	1429104	.	-	.	Parent=Os05t0125050-00
Chr05	irgsp1_rep	mRNA	1440997	1441914	.	-	.	ID=Os05t0125100-01;Name=Os05t0125100-01;Locus_id=Os05g0125100;Note=Conserved hypothetical protein.;Transcript_evidence=AK242445 (DDBJ%2C Best hit);ORF_evidence=NP_001174192.1 (RefSeq);NIAS_FLcDNA=J080094K16;TENOR=Os05t0125100-01;KEGG=Os05t0125100-01
Chr05	irgsp1_rep	five_prime_UTR	1441913	1441914	.	-	.	Parent=Os05t0125100-01
Chr05	irgsp1_rep	CDS	1441271	1441912	.	-	0	Parent=Os05t0125100-01
Chr05	irgsp1_rep	three_prime_UTR	1440997	1441270	.	-	.	Parent=Os05t0125100-01
Chr05	irgsp1_rep	mRNA	1454720	1457228	.	+	.	ID=Os05t0125200-01;Name=Os05t0125200-01;Locus_id=Os05g0125200;Note=Concanavalin A-like lectin/glucanase%2C subgroup domain containing protein.;Transcript_evidence=AK120637 (DDBJ%2C Best hit);ORF_evidence=B8AXJ4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013153K02;Expression=AK120637;TENOR=Os05t0125200-01;KEGG=Os05t0125200-01
Chr05	irgsp1_rep	five_prime_UTR	1454720	1454728	.	+	.	Parent=Os05t0125200-01
Chr05	irgsp1_rep	CDS	1454729	1457044	.	+	0	Parent=Os05t0125200-01
Chr05	irgsp1_rep	three_prime_UTR	1457045	1457228	.	+	.	Parent=Os05t0125200-01
Chr05	irgsp1_rep	mRNA	1460830	1461749	.	-	.	ID=Os05t0125250-01;Name=Os05t0125250-01;Locus_id=Os05g0125250;Note=Non-protein coding transcript.;Transcript_evidence=AK243077 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J100019K19;TENOR=Os05t0125250-01
Chr05	irgsp1_rep	exon	1461351	1461749	.	-	.	Parent=Os05t0125250-01
Chr05	irgsp1_rep	exon	1460830	1461247	.	-	.	Parent=Os05t0125250-01
Chr05	irgsp1_rep	mRNA	1461362	1463780	.	+	.	ID=Os05t0125300-00;Name=Os05t0125300-00;Locus_id=Os05g0125300;CGSNL Gene Symbol=RLCK177;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 177;Oryzabase Gene Symbol Synonym(s)=OsRLCK177;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 177;Note=Similar to Receptor protein kinase-like protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001152251.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);Oryzabase=18879;TENOR=Os05t0125300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	1461362	1461482	.	+	0	Parent=Os05t0125300-00
Chr05	irgsp1_rep	CDS	1462070	1462287	.	+	2	Parent=Os05t0125300-00
Chr05	irgsp1_rep	CDS	1462382	1462571	.	+	0	Parent=Os05t0125300-00
Chr05	irgsp1_rep	CDS	1462790	1463181	.	+	2	Parent=Os05t0125300-00
Chr05	irgsp1_rep	CDS	1463370	1463780	.	+	0	Parent=Os05t0125300-00
Chr05	irgsp1_rep	mRNA	1463018	1463938	.	-	.	ID=Os05t0125350-00;Name=Os05t0125350-00;Locus_id=Os05g0125350;Note=Non-protein coding transcript.;Transcript_evidence=BT009337 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0125350-00
Chr05	irgsp1_rep	exon	1463018	1463938	.	-	.	Parent=Os05t0125350-00
Chr05	irgsp1_rep	mRNA	1466804	1469116	.	+	.	ID=Os05t0125400-00;Name=Os05t0125400-00;Locus_id=Os05g0125400;Note=Similar to protein kinase APK1B.;Transcript_evidence=AK377010 (DDBJ);ORF_evidence=NP_001152251.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os05t0125400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	1466804	1466912	.	+	0	Parent=Os05t0125400-00
Chr05	irgsp1_rep	CDS	1467209	1467426	.	+	2	Parent=Os05t0125400-00
Chr05	irgsp1_rep	CDS	1467527	1467716	.	+	0	Parent=Os05t0125400-00
Chr05	irgsp1_rep	CDS	1467979	1468370	.	+	2	Parent=Os05t0125400-00
Chr05	irgsp1_rep	CDS	1468555	1468968	.	+	0	Parent=Os05t0125400-00
Chr05	irgsp1_rep	three_prime_UTR	1468969	1469116	.	+	.	Parent=Os05t0125400-00
Chr05	irgsp1_rep	mRNA	1470125	1472594	.	+	.	ID=Os05t0125450-00;Name=Os05t0125450-00;Locus_id=Os05g0125450;Note=Non-protein coding transcript.;Transcript_evidence=BT016848 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0125450-00
Chr05	irgsp1_rep	exon	1470125	1470358	.	+	.	Parent=Os05t0125450-00
Chr05	irgsp1_rep	exon	1470695	1470758	.	+	.	Parent=Os05t0125450-00
Chr05	irgsp1_rep	exon	1471172	1471249	.	+	.	Parent=Os05t0125450-00
Chr05	irgsp1_rep	exon	1471436	1471602	.	+	.	Parent=Os05t0125450-00
Chr05	irgsp1_rep	exon	1471792	1471856	.	+	.	Parent=Os05t0125450-00
Chr05	irgsp1_rep	exon	1471942	1471985	.	+	.	Parent=Os05t0125450-00
Chr05	irgsp1_rep	exon	1472208	1472275	.	+	.	Parent=Os05t0125450-00
Chr05	irgsp1_rep	exon	1472536	1472594	.	+	.	Parent=Os05t0125450-00
Chr05	irgsp1_rep	mRNA	1470049	1473944	.	-	.	ID=Os05t0125500-01;Name=Os05t0125500-01;Locus_id=Os05g0125500;Oryzabase Gene Name Synonym(s)=Acyl-coenzyme A dehydrogenase%2C mitochondrial precursor;Note=Similar to Isovaleryl-CoA dehydrogenase%2C mitochondrial precursor (EC 1.3.99.10) (IVD).;Transcript_evidence=AK066314 (DDBJ%2C Best hit);ORF_evidence=B4FQ64 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995),Molecular Function: oxidoreductase activity%2C acting on the CH-CH group of donors (GO:0016627),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Acyl-CoA dehydrogenase%2C conserved site (IPR006089),Acyl-CoA oxidase/dehydrogenase%2C type 1 (IPR006090),Acyl-CoA oxidase/dehydrogenase%2C central domain (IPR006091),Acyl-CoA dehydrogenase%2C N-terminal (IPR006092),Acyl-CoA dehydrogenase/oxidase C-terminal (IPR009075),Acyl-CoA dehydrogenase/oxidase (IPR009100),Acyl-CoA dehydrogenase/oxidase%2C N-terminal (IPR013786);NIAS_FLcDNA=J013064C04;Oryzabase=21682;Expression=AK066314;TENOR=Os05t0125500-01;KEGG=Os05t0125500-01 (EC:1.3.99.10)
Chr05	irgsp1_rep	five_prime_UTR	1473846	1473944	.	-	.	Parent=Os05t0125500-01
Chr05	irgsp1_rep	CDS	1473735	1473845	.	-	0	Parent=Os05t0125500-01
Chr05	irgsp1_rep	CDS	1473486	1473627	.	-	0	Parent=Os05t0125500-01
Chr05	irgsp1_rep	CDS	1473088	1473212	.	-	2	Parent=Os05t0125500-01
Chr05	irgsp1_rep	CDS	1472927	1472971	.	-	0	Parent=Os05t0125500-01
Chr05	irgsp1_rep	CDS	1472754	1472802	.	-	0	Parent=Os05t0125500-01
Chr05	irgsp1_rep	CDS	1472552	1472661	.	-	2	Parent=Os05t0125500-01
Chr05	irgsp1_rep	CDS	1472216	1472292	.	-	0	Parent=Os05t0125500-01
Chr05	irgsp1_rep	CDS	1471944	1471994	.	-	1	Parent=Os05t0125500-01
Chr05	irgsp1_rep	CDS	1471794	1471858	.	-	1	Parent=Os05t0125500-01
Chr05	irgsp1_rep	CDS	1471450	1471604	.	-	2	Parent=Os05t0125500-01
Chr05	irgsp1_rep	CDS	1471301	1471341	.	-	0	Parent=Os05t0125500-01
Chr05	irgsp1_rep	CDS	1471173	1471227	.	-	1	Parent=Os05t0125500-01
Chr05	irgsp1_rep	CDS	1470703	1470759	.	-	0	Parent=Os05t0125500-01
Chr05	irgsp1_rep	CDS	1470219	1470365	.	-	0	Parent=Os05t0125500-01
Chr05	irgsp1_rep	three_prime_UTR	1470049	1470218	.	-	.	Parent=Os05t0125500-01
Chr05	irgsp1_rep	mRNA	1475291	1477550	.	+	.	ID=Os05t0125600-01;Name=Os05t0125600-01;Locus_id=Os05g0125600;Note=Protein of unknown function DUF1677%2C Oryza sativa family protein.;Transcript_evidence=AK102952 (DDBJ%2C Best hit);ORF_evidence=B9FGL1 (UniProt);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);NIAS_FLcDNA=J033115D18;Expression=AK102952;TENOR=Os05t0125600-01;KEGG=Os05t0125600-01
Chr05	irgsp1_rep	five_prime_UTR	1475291	1475451	.	+	.	Parent=Os05t0125600-01
Chr05	irgsp1_rep	five_prime_UTR	1476007	1476032	.	+	.	Parent=Os05t0125600-01
Chr05	irgsp1_rep	CDS	1476033	1477241	.	+	0	Parent=Os05t0125600-01
Chr05	irgsp1_rep	three_prime_UTR	1477242	1477550	.	+	.	Parent=Os05t0125600-01
Chr05	irgsp1_rep	mRNA	1477216	1477660	.	+	.	ID=Os05t0125600-02;Name=Os05t0125600-02;Locus_id=Os05g0125600;Note=Non-protein coding transcript.;Transcript_evidence=AK063902 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-122-H07;TENOR=Os05t0125600-02
Chr05	irgsp1_rep	exon	1477216	1477660	.	+	.	Parent=Os05t0125600-02
Chr05	irgsp1_rep	mRNA	1482721	1483413	.	+	.	ID=Os05t0125900-01;Name=Os05t0125900-01;Locus_id=Os05g0125900;Note=Conserved hypothetical protein.;Transcript_evidence=AK119230 (DDBJ%2C Best hit),AK063078 (DDBJ%2C Best hit);ORF_evidence=B8AXJ9 (UniProt);NIAS_FLcDNA=001-111-B11,001-110-H11;TENOR=Os05t0125900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	1482721	1482721	.	+	.	Parent=Os05t0125900-01
Chr05	irgsp1_rep	CDS	1482722	1482976	.	+	0	Parent=Os05t0125900-01
Chr05	irgsp1_rep	three_prime_UTR	1482977	1483413	.	+	.	Parent=Os05t0125900-01
Chr05	irgsp1_rep	mRNA	1493978	1496457	.	+	.	ID=Os05t0126100-01;Name=Os05t0126100-01;Locus_id=Os05g0126100;CGSNL Gene Symbol=TET8;CGSNL Gene Name=TETRASPANIN 8;Oryzabase Gene Symbol Synonym(s)=OsTET8;Oryzabase Gene Name Synonym(s)=tetraspanin 8;Note=Tetraspanin domain containing protein.;Transcript_evidence=AK066098 (DDBJ%2C Best hit),AK099070 (DDBJ%2C Best hit);ORF_evidence=NP_566411.2 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Tetraspanin (IPR018499);NIAS_FLcDNA=J013054A22,J013167F21;Oryzabase=20313;Expression=AK066098;TENOR=Os05t0126100-01;KEGG=Os05t0126100-01
Chr05	irgsp1_rep	five_prime_UTR	1493978	1494312	.	+	.	Parent=Os05t0126100-01
Chr05	irgsp1_rep	CDS	1494313	1494813	.	+	0	Parent=Os05t0126100-01
Chr05	irgsp1_rep	CDS	1495179	1495526	.	+	0	Parent=Os05t0126100-01
Chr05	irgsp1_rep	CDS	1496288	1496305	.	+	0	Parent=Os05t0126100-01
Chr05	irgsp1_rep	three_prime_UTR	1496306	1496457	.	+	.	Parent=Os05t0126100-01
Chr05	irgsp1_rep	mRNA	1494236	1496542	.	+	.	ID=Os05t0126100-02;Name=Os05t0126100-02;Locus_id=Os05g0126100;CGSNL Gene Symbol=TET8;CGSNL Gene Name=TETRASPANIN 8;Oryzabase Gene Symbol Synonym(s)=OsTET8;Oryzabase Gene Name Synonym(s)=tetraspanin 8;Note=Similar to predicted protein.;Transcript_evidence=AK059541 (DDBJ%2C Best hit);ORF_evidence=NP_566411.2 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Tetraspanin (IPR018499);NIAS_FLcDNA=001-029-E11;Oryzabase=20313;Expression=AK059541;TENOR=Os05t0126100-02;KEGG=Os05t0126100-02
Chr05	irgsp1_rep	five_prime_UTR	1494236	1494312	.	+	.	Parent=Os05t0126100-02
Chr05	irgsp1_rep	CDS	1494313	1494813	.	+	0	Parent=Os05t0126100-02
Chr05	irgsp1_rep	CDS	1495207	1495526	.	+	0	Parent=Os05t0126100-02
Chr05	irgsp1_rep	CDS	1496288	1496327	.	+	1	Parent=Os05t0126100-02
Chr05	irgsp1_rep	three_prime_UTR	1496328	1496542	.	+	.	Parent=Os05t0126100-02
Chr05	irgsp1_rep	mRNA	1494328	1495571	.	-	.	ID=Os05t0126150-00;Name=Os05t0126150-00;Locus_id=Os05g0126150;Note=Non-protein coding transcript.;Transcript_evidence=BT062167 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0126150-00
Chr05	irgsp1_rep	exon	1495174	1495571	.	-	.	Parent=Os05t0126150-00
Chr05	irgsp1_rep	exon	1494328	1494877	.	-	.	Parent=Os05t0126150-00
Chr05	irgsp1_rep	mRNA	1497942	1499638	.	-	.	ID=Os05t0126200-01;Name=Os05t0126200-01;Locus_id=Os05g0126200;Note=Conserved hypothetical protein.;Transcript_evidence=AK059554 (DDBJ%2C Best hit),AK121734 (DDBJ%2C Best hit);ORF_evidence=A2XZX6 (UniProt);NIAS_FLcDNA=001-029-G06,J033084B09;Expression=AK059554;TENOR=Os05t0126200-01;KEGG=Os05t0126200-01
Chr05	irgsp1_rep	five_prime_UTR	1499624	1499638	.	-	.	Parent=Os05t0126200-01
Chr05	irgsp1_rep	CDS	1499332	1499623	.	-	0	Parent=Os05t0126200-01
Chr05	irgsp1_rep	CDS	1499014	1499135	.	-	2	Parent=Os05t0126200-01
Chr05	irgsp1_rep	CDS	1498206	1498370	.	-	0	Parent=Os05t0126200-01
Chr05	irgsp1_rep	three_prime_UTR	1497942	1498205	.	-	.	Parent=Os05t0126200-01
Chr05	irgsp1_rep	mRNA	1501068	1502720	.	-	.	ID=Os05t0126300-01;Name=Os05t0126300-01;Locus_id=Os05g0126300;Note=Conserved hypothetical protein.;Transcript_evidence=AK062261 (DDBJ%2C Best hit);ORF_evidence=B9FGL5 (UniProt);NIAS_FLcDNA=001-047-H03;TENOR=Os05t0126300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	1502719	1502720	.	-	.	Parent=Os05t0126300-01
Chr05	irgsp1_rep	CDS	1501462	1502718	.	-	0	Parent=Os05t0126300-01
Chr05	irgsp1_rep	three_prime_UTR	1501068	1501461	.	-	.	Parent=Os05t0126300-01
Chr05	irgsp1_rep	mRNA	1502980	1508460	.	-	.	ID=Os05t0126400-01;Name=Os05t0126400-01;Locus_id=Os05g0126400;Note=Conserved hypothetical protein.;Transcript_evidence=AK070653 (DDBJ%2C Best hit);ORF_evidence=B9FGL5 (UniProt);NIAS_FLcDNA=J023055D14;TENOR=Os05t0126400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	1508118	1508460	.	-	0	Parent=Os05t0126400-01
Chr05	irgsp1_rep	CDS	1507956	1508020	.	-	2	Parent=Os05t0126400-01
Chr05	irgsp1_rep	three_prime_UTR	1507723	1507955	.	-	.	Parent=Os05t0126400-01
Chr05	irgsp1_rep	three_prime_UTR	1506766	1507462	.	-	.	Parent=Os05t0126400-01
Chr05	irgsp1_rep	three_prime_UTR	1505057	1506157	.	-	.	Parent=Os05t0126400-01
Chr05	irgsp1_rep	three_prime_UTR	1502980	1504235	.	-	.	Parent=Os05t0126400-01
Chr05	irgsp1_rep	mRNA	1510651	1510951	.	+	.	ID=Os05t0126501-00;Name=Os05t0126501-00;Locus_id=Os05g0126501;Note=Hypothetical protein.;Transcript_evidence=AM055639 (DDBJ);ORF_evidence=GeneMark;TENOR=Os05t0126501-00
Chr05	irgsp1_rep	five_prime_UTR	1510651	1510651	.	+	.	Parent=Os05t0126501-00
Chr05	irgsp1_rep	CDS	1510652	1510951	.	+	0	Parent=Os05t0126501-00
Chr05	irgsp1_rep	mRNA	1510707	1510973	.	-	.	ID=Os05t0126600-00;Name=Os05t0126600-00;Locus_id=Os05g0126600;Note=Hypothetical protein.;Transcript_evidence=EU968857 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0126600-00
Chr05	irgsp1_rep	five_prime_UTR	1510951	1510973	.	-	.	Parent=Os05t0126600-00
Chr05	irgsp1_rep	CDS	1510707	1510950	.	-	0	Parent=Os05t0126600-00
Chr05	irgsp1_rep	mRNA	1515572	1520637	.	+	.	ID=Os05t0126700-01;Name=Os05t0126700-01;Locus_id=Os05g0126700;Note=Conserved hypothetical protein.;Transcript_evidence=AK102104 (DDBJ%2C Best hit),AK067404 (DDBJ%2C Best hit);ORF_evidence=A2XZY4 (UniProt);NIAS_FLcDNA=J033084B10,J013106F19;TENOR=Os05t0126700-01
Chr05	irgsp1_rep	five_prime_UTR	1515572	1516483	.	+	.	Parent=Os05t0126700-01
Chr05	irgsp1_rep	five_prime_UTR	1517121	1519998	.	+	.	Parent=Os05t0126700-01
Chr05	irgsp1_rep	CDS	1519999	1520409	.	+	0	Parent=Os05t0126700-01
Chr05	irgsp1_rep	three_prime_UTR	1520410	1520637	.	+	.	Parent=Os05t0126700-01
Chr05	irgsp1_rep	mRNA	1521685	1522793	.	-	.	ID=Os05t0126800-01;Name=Os05t0126800-01;Locus_id=Os05g0126800;Note=Mss4-like domain containing protein.;Transcript_evidence=AK287591 (DDBJ%2C Best hit);ORF_evidence=B8AXK2 (UniProt);NIAS_FLcDNA=J065046E18;TENOR=Os05t0126800-01;KEGG=Os05t0126800-01
Chr05	irgsp1_rep	five_prime_UTR	1522640	1522793	.	-	.	Parent=Os05t0126800-01
Chr05	irgsp1_rep	CDS	1522572	1522639	.	-	0	Parent=Os05t0126800-01
Chr05	irgsp1_rep	CDS	1522075	1522432	.	-	1	Parent=Os05t0126800-01
Chr05	irgsp1_rep	three_prime_UTR	1521782	1522074	.	-	.	Parent=Os05t0126800-01
Chr05	irgsp1_rep	three_prime_UTR	1521685	1521773	.	-	.	Parent=Os05t0126800-01
Chr05	irgsp1_rep	mRNA	1535764	1541542	.	+	.	ID=Os05t0127200-01;Name=Os05t0127200-01;Locus_id=Os05g0127200;CGSNL Gene Symbol=PLC4;CGSNL Gene Name=PHOSPHOLIPASE C4;Oryzabase Gene Symbol Synonym(s)=OsPLC4;Oryzabase Gene Name Synonym(s)=phospholipase C4%2C Phosphatidylinositol-hydrolyzing phospholipase C4;Note=Similar to Phospholipase C (Fragment).;Transcript_evidence=AK119748 (DDBJ%2C Best hit);ORF_evidence=E5G604 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: signal transduction (GO:0007165),Biological Process: intracellular signal transduction (GO:0035556),Molecular Function: phosphatidylinositol phospholipase C activity (GO:0004435),Molecular Function: phospholipase C activity (GO:0004629),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: phosphoric diester hydrolase activity (GO:0008081);InterPro=C2 calcium-dependent membrane targeting (IPR000008),Phospholipase C%2C phosphatidylinositol-specific %2C X domain (IPR000909),Phosphoinositide phospholipase C (IPR001192),Phospholipase C%2C phosphatidylinositol-specific%2C Y domain (IPR001711),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),EF-hand-like domain (IPR011992),Phospholipase C%2C phosphoinositol-specific%2C EF-hand-like (IPR015359),PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain (IPR017946),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=002-165-F11;Oryzabase=21657;Expression=AK119748;TENOR=Os05t0127200-01;KEGG=Os05t0127200-01 (EC:3.1.4.11)
Chr05	irgsp1_rep	five_prime_UTR	1535764	1536026	.	+	.	Parent=Os05t0127200-01
Chr05	irgsp1_rep	CDS	1536027	1536368	.	+	0	Parent=Os05t0127200-01
Chr05	irgsp1_rep	CDS	1537845	1538041	.	+	0	Parent=Os05t0127200-01
Chr05	irgsp1_rep	CDS	1538875	1539010	.	+	1	Parent=Os05t0127200-01
Chr05	irgsp1_rep	CDS	1539105	1539577	.	+	0	Parent=Os05t0127200-01
Chr05	irgsp1_rep	CDS	1539686	1539803	.	+	1	Parent=Os05t0127200-01
Chr05	irgsp1_rep	CDS	1540161	1540310	.	+	0	Parent=Os05t0127200-01
Chr05	irgsp1_rep	CDS	1540438	1540524	.	+	0	Parent=Os05t0127200-01
Chr05	irgsp1_rep	CDS	1540935	1541228	.	+	0	Parent=Os05t0127200-01
Chr05	irgsp1_rep	three_prime_UTR	1541229	1541542	.	+	.	Parent=Os05t0127200-01
Chr05	irgsp1_rep	mRNA	1535942	1541563	.	+	.	ID=Os05t0127200-02;Name=Os05t0127200-02;Locus_id=Os05g0127200;CGSNL Gene Symbol=PLC4;CGSNL Gene Name=PHOSPHOLIPASE C4;Oryzabase Gene Symbol Synonym(s)=OsPLC4;Oryzabase Gene Name Synonym(s)=phospholipase C4%2C Phosphatidylinositol-hydrolyzing phospholipase C4;Note=Similar to Phospholipase C (Fragment).;Transcript_evidence=AK064924 (DDBJ%2C Best hit);ORF_evidence=E5G604 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: signal transduction (GO:0007165),Biological Process: intracellular signal transduction (GO:0035556),Molecular Function: phosphatidylinositol phospholipase C activity (GO:0004435),Molecular Function: phospholipase C activity (GO:0004629),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: phosphoric diester hydrolase activity (GO:0008081);InterPro=C2 calcium-dependent membrane targeting (IPR000008),Phospholipase C%2C phosphatidylinositol-specific %2C X domain (IPR000909),Phosphoinositide phospholipase C (IPR001192),Phospholipase C%2C phosphatidylinositol-specific%2C Y domain (IPR001711),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),EF-hand-like domain (IPR011992),Phospholipase C%2C phosphoinositol-specific%2C EF-hand-like (IPR015359),PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain (IPR017946),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=J013000N15;Oryzabase=21657;Expression=AK064924;TENOR=Os05t0127200-02;KEGG=Os05t0127200-02 (EC:3.1.4.11)
Chr05	irgsp1_rep	five_prime_UTR	1535942	1536026	.	+	.	Parent=Os05t0127200-02
Chr05	irgsp1_rep	CDS	1536027	1536368	.	+	0	Parent=Os05t0127200-02
Chr05	irgsp1_rep	CDS	1537845	1538041	.	+	0	Parent=Os05t0127200-02
Chr05	irgsp1_rep	CDS	1538875	1539010	.	+	1	Parent=Os05t0127200-02
Chr05	irgsp1_rep	CDS	1539105	1539577	.	+	0	Parent=Os05t0127200-02
Chr05	irgsp1_rep	CDS	1539686	1539803	.	+	1	Parent=Os05t0127200-02
Chr05	irgsp1_rep	CDS	1540161	1540310	.	+	0	Parent=Os05t0127200-02
Chr05	irgsp1_rep	CDS	1540438	1540524	.	+	0	Parent=Os05t0127200-02
Chr05	irgsp1_rep	CDS	1540935	1541228	.	+	0	Parent=Os05t0127200-02
Chr05	irgsp1_rep	three_prime_UTR	1541229	1541563	.	+	.	Parent=Os05t0127200-02
Chr05	irgsp1_rep	mRNA	1535903	1536374	.	-	.	ID=Os05t0127233-00;Name=Os05t0127233-00;Locus_id=Os05g0127233;Note=Hypothetical protein.;Transcript_evidence=FP092527 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0127233-00
Chr05	irgsp1_rep	CDS	1535979	1536374	.	-	0	Parent=Os05t0127233-00
Chr05	irgsp1_rep	three_prime_UTR	1535903	1535978	.	-	.	Parent=Os05t0127233-00
Chr05	irgsp1_rep	mRNA	1540430	1541246	.	-	.	ID=Os05t0127266-00;Name=Os05t0127266-00;Locus_id=Os05g0127266;Note=Non-protein coding transcript.;Transcript_evidence=AK248585 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0127266-00
Chr05	irgsp1_rep	exon	1540863	1541246	.	-	.	Parent=Os05t0127266-00
Chr05	irgsp1_rep	exon	1540430	1540550	.	-	.	Parent=Os05t0127266-00
Chr05	irgsp1_rep	mRNA	1547307	1550049	.	+	.	ID=Os05t0127300-01;Name=Os05t0127300-01;Locus_id=Os05g0127300;Oryzabase Gene Symbol Synonym(s)=OsCRR3%2C CCR3;Oryzabase Gene Name Synonym(s)=CRINKLY4-RELATED protein 3;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK121766 (DDBJ%2C Best hit);ORF_evidence=B9FGM2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Regulator of Chromosome condensation/beta-lactamase-inhibitor protein II (IPR009091),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033092A16;Oryzabase=10379;Expression=AK121766;TENOR=Os05t0127300-01;KEGG=Os05t0127300-01
Chr05	irgsp1_rep	five_prime_UTR	1547307	1547432	.	+	.	Parent=Os05t0127300-01
Chr05	irgsp1_rep	CDS	1547433	1548394	.	+	0	Parent=Os05t0127300-01
Chr05	irgsp1_rep	CDS	1548659	1549829	.	+	1	Parent=Os05t0127300-01
Chr05	irgsp1_rep	three_prime_UTR	1549830	1550049	.	+	.	Parent=Os05t0127300-01
Chr05	irgsp1_rep	mRNA	1547454	1550016	.	+	.	ID=Os05t0127300-02;Name=Os05t0127300-02;Locus_id=Os05g0127300;Oryzabase Gene Symbol Synonym(s)=OsCRR3%2C CCR3;Oryzabase Gene Name Synonym(s)=CRINKLY4-RELATED protein 3;Note=Regulator of Chromosome condensation/beta-lactamase-inhibitor protein II domain containing protein.;Transcript_evidence=AK106429 (DDBJ%2C Best hit);ORF_evidence=B9FGM2 (UniProt);InterPro=Regulator of Chromosome condensation/beta-lactamase-inhibitor protein II (IPR009091);NIAS_FLcDNA=002-103-C01;Oryzabase=10379;TENOR=Os05t0127300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	1547454	1548630	.	+	0	Parent=Os05t0127300-02
Chr05	irgsp1_rep	CDS	1549152	1549819	.	+	2	Parent=Os05t0127300-02
Chr05	irgsp1_rep	three_prime_UTR	1549820	1550016	.	+	.	Parent=Os05t0127300-02
Chr05	irgsp1_rep	mRNA	1553459	1557206	.	+	.	ID=Os05t0127400-01;Name=Os05t0127400-01;Locus_id=Os05g0127400;Oryzabase Gene Symbol Synonym(s)=OsDjB5;Oryzabase Gene Name Synonym(s)=DnaJ domain protein B5;Note=Similar to DnaJ subfamily B member 13.;Transcript_evidence=AK069823 (DDBJ%2C Best hit);ORF_evidence=B6TKS5 (UniProt);GO=Molecular Function: heat shock protein binding (GO:0031072);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623);NIAS_FLcDNA=J023029N24;Oryzabase=12154;TENOR=Os05t0127400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	1553459	1553622	.	+	.	Parent=Os05t0127400-01
Chr05	irgsp1_rep	CDS	1553623	1553704	.	+	0	Parent=Os05t0127400-01
Chr05	irgsp1_rep	CDS	1553721	1553766	.	+	2	Parent=Os05t0127400-01
Chr05	irgsp1_rep	CDS	1553934	1554207	.	+	1	Parent=Os05t0127400-01
Chr05	irgsp1_rep	three_prime_UTR	1554208	1554238	.	+	.	Parent=Os05t0127400-01
Chr05	irgsp1_rep	three_prime_UTR	1556612	1557206	.	+	.	Parent=Os05t0127400-01
Chr05	irgsp1_rep	mRNA	1553622	1557016	.	-	.	ID=Os05t0127450-00;Name=Os05t0127450-00;Locus_id=Os05g0127450;Note=Non-protein coding transcript.;Transcript_evidence=tplb0026i01 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os05t0127450-00
Chr05	irgsp1_rep	exon	1556587	1557016	.	-	.	Parent=Os05t0127450-00
Chr05	irgsp1_rep	exon	1553886	1554253	.	-	.	Parent=Os05t0127450-00
Chr05	irgsp1_rep	exon	1553622	1553794	.	-	.	Parent=Os05t0127450-00
Chr05	irgsp1_rep	mRNA	1561984	1568161	.	-	.	ID=Os05t0127500-01;Name=Os05t0127500-01;Locus_id=Os05g0127500;CGSNL Gene Symbol=2ODD6;CGSNL Gene Name=2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 6;Oryzabase Gene Symbol Synonym(s)=2-ODD6%2C Os2-ODD6%2C Os2ODD6;Oryzabase Gene Name Synonym(s)=2-oxoglutarate-dependent dioxygenase 6;Note=Similar to Leucoanthocyanidin dioxygenase-like protein.;Transcript_evidence=AK068517 (DDBJ%2C Best hit);ORF_evidence=B5M6A0 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Isopenicillin N synthase (IPR002283),Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=J013154G13;Oryzabase=22614;Expression=AK068517;TENOR=Os05t0127500-01;KEGG=Os05t0127500-01
Chr05	irgsp1_rep	five_prime_UTR	1567942	1568161	.	-	.	Parent=Os05t0127500-01
Chr05	irgsp1_rep	CDS	1567451	1567941	.	-	0	Parent=Os05t0127500-01
Chr05	irgsp1_rep	CDS	1566447	1566780	.	-	1	Parent=Os05t0127500-01
Chr05	irgsp1_rep	CDS	1562218	1562499	.	-	0	Parent=Os05t0127500-01
Chr05	irgsp1_rep	three_prime_UTR	1561984	1562217	.	-	.	Parent=Os05t0127500-01
Chr05	irgsp1_rep	mRNA	1643484	1644746	.	+	.	ID=Os05t0128000-00;Name=Os05t0128000-00;Locus_id=Os05g0128000;CGSNL Gene Symbol=MSL24;CGSNL Gene Name=MYB/SANT-LIKE 24;Oryzabase Gene Symbol Synonym(s)=OsMSL24;Oryzabase Gene Name Synonym(s)=Myb/SANT-LIKE 24;Note=Homeodomain-like containing protein.;Transcript_evidence=CT836356 (DDBJ%2C Best hit);ORF_evidence=NP_001054535.1 (RefSeq);InterPro=MYB-like (IPR017877);Oryzabase=22961;TENOR=Os05t0128000-00;KEGG=Os05t0128000-00
Chr05	irgsp1_rep	five_prime_UTR	1643484	1643574	.	+	.	Parent=Os05t0128000-00
Chr05	irgsp1_rep	CDS	1643575	1644576	.	+	0	Parent=Os05t0128000-00
Chr05	irgsp1_rep	three_prime_UTR	1644577	1644746	.	+	.	Parent=Os05t0128000-00
Chr05	irgsp1_rep	mRNA	1652025	1655698	.	+	.	ID=Os05t0128100-01;Name=Os05t0128100-01;Locus_id=Os05g0128100;Note=Hypothetical conserved gene.;Transcript_evidence=AK119308 (DDBJ%2C Best hit);ORF_evidence=Q688R4 (UniProt);NIAS_FLcDNA=001-130-G01;Expression=AK119308;TENOR=Os05t0128100-01;KEGG=Os05t0128100-01
Chr05	irgsp1_rep	five_prime_UTR	1652025	1652131	.	+	.	Parent=Os05t0128100-01
Chr05	irgsp1_rep	CDS	1652132	1652378	.	+	0	Parent=Os05t0128100-01
Chr05	irgsp1_rep	CDS	1653493	1653509	.	+	2	Parent=Os05t0128100-01
Chr05	irgsp1_rep	three_prime_UTR	1653510	1655698	.	+	.	Parent=Os05t0128100-01
Chr05	irgsp1_rep	mRNA	1652029	1654377	.	+	.	ID=Os05t0128100-02;Name=Os05t0128100-02;Locus_id=Os05g0128100;Note=Hypothetical conserved gene.;Transcript_evidence=AK108556 (DDBJ%2C Best hit);ORF_evidence=F2CX50 (UniProt);NIAS_FLcDNA=002-144-E11;Expression=AK108556;TENOR=Os05t0128100-02;KEGG=Os05t0128100-02
Chr05	irgsp1_rep	five_prime_UTR	1652029	1652131	.	+	.	Parent=Os05t0128100-02
Chr05	irgsp1_rep	CDS	1652132	1652370	.	+	0	Parent=Os05t0128100-02
Chr05	irgsp1_rep	CDS	1653420	1653639	.	+	1	Parent=Os05t0128100-02
Chr05	irgsp1_rep	three_prime_UTR	1653640	1654377	.	+	.	Parent=Os05t0128100-02
Chr05	irgsp1_rep	mRNA	1652030	1653865	.	+	.	ID=Os05t0128100-03;Name=Os05t0128100-03;Locus_id=Os05g0128100;Note=Conserved hypothetical protein.;Transcript_evidence=AK120934 (DDBJ%2C Best hit);ORF_evidence=B9FGM6 (UniProt);NIAS_FLcDNA=J023036J15;TENOR=Os05t0128100-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	1652030	1652131	.	+	.	Parent=Os05t0128100-03
Chr05	irgsp1_rep	CDS	1652132	1652200	.	+	0	Parent=Os05t0128100-03
Chr05	irgsp1_rep	CDS	1652233	1652370	.	+	0	Parent=Os05t0128100-03
Chr05	irgsp1_rep	CDS	1653420	1653470	.	+	0	Parent=Os05t0128100-03
Chr05	irgsp1_rep	three_prime_UTR	1653471	1653865	.	+	.	Parent=Os05t0128100-03
Chr05	irgsp1_rep	mRNA	1662022	1664058	.	+	.	ID=Os05t0128200-01;Name=Os05t0128200-01;Locus_id=Os05g0128200;RAP-DB Gene Symbol Synonym(s)=OsTZF5%2C OsC3H33;RAP-DB Gene Name Synonym(s)=CCCH tandem zinc finger protein 5;CGSNL Gene Symbol=C3H33;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33;Oryzabase Gene Symbol Synonym(s)=OsC3H33%2C OsTZF5%2C OsCCCH-Zn-5;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 33%2C Tandem zinc finger protein 5;Note=CCCH-tandem zinc finger protein%2C Drought resistance;Transcript_evidence=AK105767;ORF_evidence=Q688R3;GO=Molecular Function: protein binding (GO:0005515),Molecular Function: metal ion binding (GO:0046872);InterPro=Ankyrin repeat-containing domain superfamily (IPR036770),Ankyrin repeat-containing domain (IPR020683),Zinc finger%2C CCCH-type (IPR000571),Ankyrin repeat (IPR002110);NIAS_FLcDNA=001-202-E04;Manual Curation=January 15%2C 2020;Literature_PMID=31930666;Oryzabase=8598;Expression=AK105767;TENOR=Os05t0128200-01;KEGG=Os05t0128200-01;Subcellular location=cytoplasm (GO:0005737), cytoplasmic foci (GO:0000932)
Chr05	irgsp1_rep	five_prime_UTR	1662022	1662193	.	+	.	Parent=Os05t0128200-01
Chr05	irgsp1_rep	CDS	1662194	1663999	.	+	0	Parent=Os05t0128200-01
Chr05	irgsp1_rep	three_prime_UTR	1664000	1664058	.	+	.	Parent=Os05t0128200-01
Chr05	irgsp1_rep	mRNA	1662027	1664213	.	+	.	ID=Os05t0128200-02;Name=Os05t0128200-02;Locus_id=Os05g0128200;CGSNL Gene Symbol=C3H33;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33;Oryzabase Gene Symbol Synonym(s)=OsC3H33%2C OsTZF5%2C OsCCCH-Zn-5;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 33%2C Tandem zinc finger protein 5;Note=Similar to Transposable element Mu1 sequence.;Transcript_evidence=AK099898 (DDBJ%2C Best hit);ORF_evidence=D9ZIV4 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571),Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J013114A13;Oryzabase=8598;Expression=AK099898;TENOR=Os05t0128200-02;KEGG=Os05t0128200-02
Chr05	irgsp1_rep	five_prime_UTR	1662027	1662193	.	+	.	Parent=Os05t0128200-02
Chr05	irgsp1_rep	CDS	1662194	1663161	.	+	0	Parent=Os05t0128200-02
Chr05	irgsp1_rep	CDS	1663842	1664016	.	+	1	Parent=Os05t0128200-02
Chr05	irgsp1_rep	three_prime_UTR	1664017	1664213	.	+	.	Parent=Os05t0128200-02
Chr05	irgsp1_rep	mRNA	1666509	1668914	.	-	.	ID=Os05t0128300-01;Name=Os05t0128300-01;Locus_id=Os05g0128300;Note=Conserved hypothetical protein.;Transcript_evidence=AK108683 (DDBJ%2C Best hit);ORF_evidence=B8AXK5 (UniProt);NIAS_FLcDNA=002-149-B10;Expression=AK108683;TENOR=Os05t0128300-01;KEGG=Os05t0128300-01
Chr05	irgsp1_rep	five_prime_UTR	1668755	1668914	.	-	.	Parent=Os05t0128300-01
Chr05	irgsp1_rep	CDS	1668094	1668754	.	-	0	Parent=Os05t0128300-01
Chr05	irgsp1_rep	CDS	1666782	1667215	.	-	2	Parent=Os05t0128300-01
Chr05	irgsp1_rep	three_prime_UTR	1666509	1666781	.	-	.	Parent=Os05t0128300-01
Chr05	irgsp1_rep	mRNA	1668057	1668750	.	+	.	ID=Os05t0128350-00;Name=Os05t0128350-00;Locus_id=Os05g0128350;Note=Hypothetical protein.;Transcript_evidence=EU951582 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0128350-00
Chr05	irgsp1_rep	five_prime_UTR	1668057	1668286	.	+	.	Parent=Os05t0128350-00
Chr05	irgsp1_rep	CDS	1668287	1668715	.	+	0	Parent=Os05t0128350-00
Chr05	irgsp1_rep	three_prime_UTR	1668716	1668750	.	+	.	Parent=Os05t0128350-00
Chr05	irgsp1_rep	mRNA	1675495	1679054	.	-	.	ID=Os05t0128400-01;Name=Os05t0128400-01;Locus_id=Os05g0128400;RAP-DB Gene Symbol Synonym(s)=OsMTP1;RAP-DB Gene Name Synonym(s)=metal tolerance protein 1;CGSNL Gene Symbol=MTP1;CGSNL Gene Name=METAL TOLERANCE PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsMTP1;Oryzabase Gene Name Synonym(s)=metal tolerance protein 1;Note=Cation diffusion facilitator (CDF) family protein%2C Bivalent cation transporter%2C Translocation of Zn%2C Cd and other heavy metals%2C Ion homeostasis;Transcript_evidence=AK100735;ORF_evidence=Q688R1;GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Molecular Function: cation transmembrane transporter activity (GO:0008324),Cellular Component: integral component of membrane (GO:0016021);InterPro=Cation efflux protein (IPR002524),Cation efflux protein transmembrane domain (IPR027469);NIAS_FLcDNA=J023117P18;Manual Curation=May 26%2C 2016;Literature_PMID=21892614;Oryzabase=11424;TENOR=Os05t0128400-01;KEGG=Os05t0128400-01
Chr05	irgsp1_rep	five_prime_UTR	1678924	1679054	.	-	.	Parent=Os05t0128400-01
Chr05	irgsp1_rep	CDS	1675918	1677174	.	-	0	Parent=Os05t0128400-01
Chr05	irgsp1_rep	three_prime_UTR	1675495	1675917	.	-	.	Parent=Os05t0128400-01
Chr05	irgsp1_rep	mRNA	1686864	1687109	.	+	.	ID=Os05t0128600-00;Name=Os05t0128600-00;Locus_id=Os05g0128600;Note=Similar to predicted protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2XZZ7 (UniProt);TENOR=Os05t0128600-00;KEGG=Os05t0128600-00
Chr05	irgsp1_rep	CDS	1686864	1687109	.	+	0	Parent=Os05t0128600-00
Chr05	irgsp1_rep	mRNA	1693655	1694154	.	+	.	ID=Os05t0128700-00;Name=Os05t0128700-00;Locus_id=Os05g0128700;Note=Similar to PH domain containing protein.;Transcript_evidence=CT828021 (DDBJ%2C Secondary hit);ORF_evidence=NP_001152545.1 (RefSeq);TENOR=Os05t0128700-00;KEGG=Os05t0128700-00
Chr05	irgsp1_rep	five_prime_UTR	1693655	1693720	.	+	.	Parent=Os05t0128700-00
Chr05	irgsp1_rep	CDS	1693721	1693963	.	+	0	Parent=Os05t0128700-00
Chr05	irgsp1_rep	three_prime_UTR	1693964	1694154	.	+	.	Parent=Os05t0128700-00
Chr05	irgsp1_rep	mRNA	1695247	1696084	.	-	.	ID=Os05t0128900-00;Name=Os05t0128900-00;Locus_id=Os05g0128900;Note=Similar to Trehalose-phosphatase family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QQ60 (UniProt);GO=Biological Process: trehalose biosynthetic process (GO:0005992),Molecular Function: catalytic activity (GO:0003824);InterPro=Trehalose-phosphatase (IPR003337),HAD-like domain (IPR023214);TENOR=Os05t0128900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	1696056	1696084	.	-	0	Parent=Os05t0128900-00
Chr05	irgsp1_rep	CDS	1695669	1695942	.	-	1	Parent=Os05t0128900-00
Chr05	irgsp1_rep	CDS	1695247	1695579	.	-	0	Parent=Os05t0128900-00
Chr05	irgsp1_rep	mRNA	1698509	1702944	.	+	.	ID=Os05t0129000-01;Name=Os05t0129000-01;Locus_id=Os05g0129000;RAP-DB Gene Symbol Synonym(s)=OsECS;RAP-DB Gene Name Synonym(s)=gamma-glutamylcysteine synthetase%2C &gamma%3B-glutamylcysteine synthetase;Oryzabase Gene Symbol Synonym(s)=OsECS%2C ECS%2C GSH2%2C OsGSH2;Oryzabase Gene Name Synonym(s)=gamma-glutamylcysteine synthetase;Note=Gamma-glutamylcysteine synthetase%2C Glutathione (GSH) synthesis protein;Transcript_evidence=AK103315;ORF_evidence=Q688Q9;GO=Biological Process: glutathione biosynthetic process (GO:0006750),Biological Process: cellular modified amino acid biosynthetic process (GO:0042398),Molecular Function: catalytic activity (GO:0003824),Molecular Function: glutamate-cysteine ligase activity (GO:0004357);InterPro=Glutamine synthetase/guanido kinase%2C catalytic domain (IPR014746),Glutamate--cysteine ligase%2C GCS2 (IPR006336),Glutamate--cysteine ligase%2C bacteria and plant (IPR035434),Glutamate--cysteine ligase%2C plant-type (IPR011556);NIAS_FLcDNA=J033125H02;Manual Curation=August 3%2C 2020;Literature_PMID=23294545;Oryzabase=12260;Expression=AK103315;TENOR=Os05t0129000-01;KEGG=Os05t0129000-01 (EC:6.3.2.2)
Chr05	irgsp1_rep	five_prime_UTR	1698509	1698587	.	+	.	Parent=Os05t0129000-01
Chr05	irgsp1_rep	five_prime_UTR	1698704	1698716	.	+	.	Parent=Os05t0129000-01
Chr05	irgsp1_rep	CDS	1698717	1698952	.	+	0	Parent=Os05t0129000-01
Chr05	irgsp1_rep	CDS	1699585	1699735	.	+	1	Parent=Os05t0129000-01
Chr05	irgsp1_rep	CDS	1699903	1700010	.	+	0	Parent=Os05t0129000-01
Chr05	irgsp1_rep	CDS	1700154	1700246	.	+	0	Parent=Os05t0129000-01
Chr05	irgsp1_rep	CDS	1700372	1700455	.	+	0	Parent=Os05t0129000-01
Chr05	irgsp1_rep	CDS	1700553	1700621	.	+	0	Parent=Os05t0129000-01
Chr05	irgsp1_rep	CDS	1700713	1700783	.	+	0	Parent=Os05t0129000-01
Chr05	irgsp1_rep	CDS	1700860	1700928	.	+	1	Parent=Os05t0129000-01
Chr05	irgsp1_rep	CDS	1701085	1701178	.	+	1	Parent=Os05t0129000-01
Chr05	irgsp1_rep	CDS	1701296	1701385	.	+	0	Parent=Os05t0129000-01
Chr05	irgsp1_rep	CDS	1701481	1701561	.	+	0	Parent=Os05t0129000-01
Chr05	irgsp1_rep	CDS	1701740	1701832	.	+	0	Parent=Os05t0129000-01
Chr05	irgsp1_rep	CDS	1702049	1702129	.	+	0	Parent=Os05t0129000-01
Chr05	irgsp1_rep	CDS	1702214	1702283	.	+	0	Parent=Os05t0129000-01
Chr05	irgsp1_rep	CDS	1702421	1702509	.	+	2	Parent=Os05t0129000-01
Chr05	irgsp1_rep	three_prime_UTR	1702510	1702944	.	+	.	Parent=Os05t0129000-01
Chr05	irgsp1_rep	mRNA	1701809	1702880	.	+	.	ID=Os05t0129000-02;Name=Os05t0129000-02;Locus_id=Os05g0129000;Oryzabase Gene Symbol Synonym(s)=OsECS%2C ECS%2C GSH2%2C OsGSH2;Oryzabase Gene Name Synonym(s)=gamma-glutamylcysteine synthetase;Note=Similar to cDNA clone:J033125H02%2C full insert sequence.;Transcript_evidence=AK058241 (DDBJ%2C Best hit);ORF_evidence=B7EUG4 (UniProt);NIAS_FLcDNA=001-011-G10;Oryzabase=12260;Expression=AK058241;TENOR=Os05t0129000-02;KEGG=Os05t0129000-02 (EC:6.3.2.2)
Chr05	irgsp1_rep	CDS	1701809	1701832	.	+	0	Parent=Os05t0129000-02
Chr05	irgsp1_rep	CDS	1702049	1702129	.	+	0	Parent=Os05t0129000-02
Chr05	irgsp1_rep	CDS	1702214	1702283	.	+	0	Parent=Os05t0129000-02
Chr05	irgsp1_rep	CDS	1702421	1702509	.	+	2	Parent=Os05t0129000-02
Chr05	irgsp1_rep	three_prime_UTR	1702510	1702880	.	+	.	Parent=Os05t0129000-02
Chr05	irgsp1_rep	mRNA	1705440	1706779	.	+	.	ID=Os05t0129100-00;Name=Os05t0129100-00;Locus_id=Os05g0129100;Note=Similar to Acetylornithine aminotransferase%2C mitochondrial.;Transcript_evidence=AK068200 (DDBJ%2C Secondary hit);ORF_evidence=O04866 (UniProt);GO=Biological Process: arginine metabolic process (GO:0006525),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transaminase activity (GO:0008483),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Acetylornithine/Succinylornithine aminotransferase (IPR004636),Aminotransferase class-III (IPR005814),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);TENOR=Os05t0129100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	1705440	1705440	.	+	.	Parent=Os05t0129100-00
Chr05	irgsp1_rep	CDS	1705441	1705977	.	+	0	Parent=Os05t0129100-00
Chr05	irgsp1_rep	CDS	1706338	1706779	.	+	0	Parent=Os05t0129100-00
Chr05	irgsp1_rep	mRNA	1707173	1709074	.	-	.	ID=Os05t0129200-00;Name=Os05t0129200-00;Locus_id=Os05g0129200;CGSNL Gene Symbol=GH9B12;CGSNL Gene Name=GLYCOSIDE HYDROLASE 9B12;Oryzabase Gene Symbol Synonym(s)=OsGH9B12;Oryzabase Gene Name Synonym(s)=glycoside hydrolase OsGH9B12%2C glycoside hydrolase 9B12;Note=Endoglucanase 14.;Transcript_evidence=P0C1U5 (UniProt);ORF_evidence=P0C1U5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 9 (IPR001701),Six-hairpin glycosidase-like (IPR008928),Six-hairpin glycosidase (IPR012341),Glycoside hydrolase%2C family 9%2C active site (IPR018221);Oryzabase=11712;TENOR=Os05t0129200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	1708397	1709074	.	-	0	Parent=Os05t0129200-00
Chr05	irgsp1_rep	CDS	1708170	1708256	.	-	0	Parent=Os05t0129200-00
Chr05	irgsp1_rep	CDS	1707924	1708070	.	-	0	Parent=Os05t0129200-00
Chr05	irgsp1_rep	CDS	1707173	1707799	.	-	0	Parent=Os05t0129200-00
Chr05	irgsp1_rep	mRNA	1707186	1709022	.	+	.	ID=Os05t0129250-00;Name=Os05t0129250-00;Locus_id=Os05g0129250;Note=Hypothetical protein.;Transcript_evidence=tplb0042g22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0129250-00
Chr05	irgsp1_rep	five_prime_UTR	1707186	1707802	.	+	.	Parent=Os05t0129250-00
Chr05	irgsp1_rep	five_prime_UTR	1707918	1708204	.	+	.	Parent=Os05t0129250-00
Chr05	irgsp1_rep	CDS	1708205	1708207	.	+	0	Parent=Os05t0129250-00
Chr05	irgsp1_rep	CDS	1708412	1708790	.	+	0	Parent=Os05t0129250-00
Chr05	irgsp1_rep	CDS	1708871	1709022	.	+	2	Parent=Os05t0129250-00
Chr05	irgsp1_rep	mRNA	1717710	1719083	.	+	.	ID=Os05t0129300-02;Name=Os05t0129300-02;Locus_id=Os05g0129300;CGSNL Gene Symbol=LIP19;CGSNL Gene Name=LOW-TEMPERATURE-INDUCED PROTEIN 19;Oryzabase Gene Symbol Synonym(s)=Lip19%2C lip19%2C OsbZIP38;Oryzabase Gene Name Synonym(s)=low-temperature-induced protein 19%2C bZIP transcription factor 38;Note=Basic/leucine zipper protein.;Transcript_evidence=AK065180 (DDBJ%2C Best hit),AK104844 (DDBJ%2C Best hit),AK105138 (DDBJ%2C Best hit);ORF_evidence=Q08418 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);NIAS_FLcDNA=J013002D17,001-042-G08,001-102-F02;Oryzabase=9985;Expression=AK065180;TENOR=Os05t0129300-02;KEGG=Os05t0129300-02
Chr05	irgsp1_rep	five_prime_UTR	1717710	1718262	.	+	.	Parent=Os05t0129300-02
Chr05	irgsp1_rep	CDS	1718263	1718709	.	+	0	Parent=Os05t0129300-02
Chr05	irgsp1_rep	three_prime_UTR	1718710	1719083	.	+	.	Parent=Os05t0129300-02
Chr05	irgsp1_rep	mRNA	1720445	1721211	.	+	.	ID=Os05t0129400-01;Name=Os05t0129400-01;Locus_id=Os05g0129400;Note=Ankyrin repeat containing protein.;Transcript_evidence=AK102359 (DDBJ%2C Best hit);ORF_evidence=B4FC44 (UniProt);NIAS_FLcDNA=J033091I05;Expression=AK102359;TENOR=Os05t0129400-01;KEGG=Os05t0129400-01
Chr05	irgsp1_rep	five_prime_UTR	1720445	1720644	.	+	.	Parent=Os05t0129400-01
Chr05	irgsp1_rep	CDS	1720645	1721013	.	+	0	Parent=Os05t0129400-01
Chr05	irgsp1_rep	three_prime_UTR	1721014	1721211	.	+	.	Parent=Os05t0129400-01
Chr05	irgsp1_rep	mRNA	1724513	1730837	.	-	.	ID=Os05t0129700-01;Name=Os05t0129700-01;Locus_id=Os05g0129700;CGSNL Gene Symbol=OSKN2;CGSNL Gene Name=KNOX PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsKn2%2C OsH71%2C HOS9%2C OSH71%2C OSH71/Oskn2;Oryzabase Gene Name Synonym(s)=KNOX protein 2%2C Oryza sativa homeobox71%2C Homeobox protein knotted-1-like 10%2C Homeobox protein OSH71%2C Homeobox protein HOS9%2C Homeobox protein knotted-1-like 2%2C Rice KNOX gene-71;Note=KNOX class homeodomain protein (Knotted1-type homeobox protein OSH71).;Transcript_evidence=AK111878 (DDBJ%2C Best hit);ORF_evidence=Q7GDL5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),ELK (IPR005539),KNOX1 (IPR005540),KNOX2 (IPR005541),Homeobox KN domain (IPR008422),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Homeobox%2C conserved site (IPR017970);NIAS_FLcDNA=J033046I12;Oryzabase=6190;Expression=AK111878;TENOR=Os05t0129700-01;KEGG=Os05t0129700-01
Chr05	irgsp1_rep	five_prime_UTR	1730339	1730837	.	-	.	Parent=Os05t0129700-01
Chr05	irgsp1_rep	CDS	1730108	1730338	.	-	0	Parent=Os05t0129700-01
Chr05	irgsp1_rep	CDS	1729796	1729918	.	-	0	Parent=Os05t0129700-01
Chr05	irgsp1_rep	CDS	1729537	1729675	.	-	0	Parent=Os05t0129700-01
Chr05	irgsp1_rep	CDS	1725141	1725391	.	-	2	Parent=Os05t0129700-01
Chr05	irgsp1_rep	CDS	1724862	1725053	.	-	0	Parent=Os05t0129700-01
Chr05	irgsp1_rep	three_prime_UTR	1724513	1724861	.	-	.	Parent=Os05t0129700-01
Chr05	irgsp1_rep	mRNA	1743366	1744541	.	+	.	ID=Os05t0129800-01;Name=Os05t0129800-01;Locus_id=Os05g0129800;CGSNL Gene Symbol=WRKY109;CGSNL Gene Name=WRKY GENE 109;Oryzabase Gene Symbol Synonym(s)=OsWRKY109;Note=DNA-binding WRKY domain containing protein.;Transcript_evidence=AK241799 (DDBJ%2C Best hit);ORF_evidence=NP_001174199.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);NIAS_FLcDNA=J065208G18;Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=9213;TENOR=Os05t0129800-01;KEGG=Os05t0129800-01
Chr05	irgsp1_rep	five_prime_UTR	1743366	1743467	.	+	.	Parent=Os05t0129800-01
Chr05	irgsp1_rep	CDS	1743468	1743517	.	+	0	Parent=Os05t0129800-01
Chr05	irgsp1_rep	CDS	1743616	1744306	.	+	1	Parent=Os05t0129800-01
Chr05	irgsp1_rep	three_prime_UTR	1744307	1744541	.	+	.	Parent=Os05t0129800-01
Chr05	irgsp1_rep	mRNA	1744782	1748850	.	-	.	ID=Os05t0129900-01;Name=Os05t0129900-01;Locus_id=Os05g0129900;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK060436 (DDBJ%2C Best hit);ORF_evidence=B9FMA1 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide TPR-1 (IPR001440),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=001-011-C12;Expression=AK060436;TENOR=Os05t0129900-01;KEGG=Os05t0129900-01
Chr05	irgsp1_rep	five_prime_UTR	1748564	1748850	.	-	.	Parent=Os05t0129900-01
Chr05	irgsp1_rep	CDS	1748561	1748563	.	-	0	Parent=Os05t0129900-01
Chr05	irgsp1_rep	CDS	1747988	1748122	.	-	0	Parent=Os05t0129900-01
Chr05	irgsp1_rep	CDS	1747752	1747877	.	-	0	Parent=Os05t0129900-01
Chr05	irgsp1_rep	CDS	1747373	1747493	.	-	0	Parent=Os05t0129900-01
Chr05	irgsp1_rep	CDS	1747209	1747291	.	-	2	Parent=Os05t0129900-01
Chr05	irgsp1_rep	CDS	1746981	1747082	.	-	0	Parent=Os05t0129900-01
Chr05	irgsp1_rep	CDS	1746583	1746696	.	-	0	Parent=Os05t0129900-01
Chr05	irgsp1_rep	CDS	1745758	1745943	.	-	0	Parent=Os05t0129900-01
Chr05	irgsp1_rep	CDS	1745574	1745668	.	-	0	Parent=Os05t0129900-01
Chr05	irgsp1_rep	CDS	1745401	1745498	.	-	1	Parent=Os05t0129900-01
Chr05	irgsp1_rep	CDS	1744995	1745125	.	-	2	Parent=Os05t0129900-01
Chr05	irgsp1_rep	three_prime_UTR	1744782	1744994	.	-	.	Parent=Os05t0129900-01
Chr05	irgsp1_rep	mRNA	1744769	1748791	.	-	.	ID=Os05t0129900-02;Name=Os05t0129900-02;Locus_id=Os05g0129900;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK102515 (DDBJ%2C Best hit);ORF_evidence=A6N0T7 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide TPR-1 (IPR001440),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J033095K15;TENOR=Os05t0129900-02
Chr05	irgsp1_rep	five_prime_UTR	1748564	1748791	.	-	.	Parent=Os05t0129900-02
Chr05	irgsp1_rep	CDS	1748561	1748563	.	-	0	Parent=Os05t0129900-02
Chr05	irgsp1_rep	CDS	1747988	1748122	.	-	0	Parent=Os05t0129900-02
Chr05	irgsp1_rep	CDS	1747752	1747877	.	-	0	Parent=Os05t0129900-02
Chr05	irgsp1_rep	CDS	1747373	1747493	.	-	0	Parent=Os05t0129900-02
Chr05	irgsp1_rep	CDS	1747209	1747291	.	-	2	Parent=Os05t0129900-02
Chr05	irgsp1_rep	CDS	1746981	1747082	.	-	0	Parent=Os05t0129900-02
Chr05	irgsp1_rep	CDS	1746583	1746696	.	-	0	Parent=Os05t0129900-02
Chr05	irgsp1_rep	CDS	1745758	1745943	.	-	0	Parent=Os05t0129900-02
Chr05	irgsp1_rep	CDS	1745574	1745668	.	-	0	Parent=Os05t0129900-02
Chr05	irgsp1_rep	CDS	1745401	1745498	.	-	1	Parent=Os05t0129900-02
Chr05	irgsp1_rep	CDS	1744995	1745125	.	-	2	Parent=Os05t0129900-02
Chr05	irgsp1_rep	three_prime_UTR	1744769	1744994	.	-	.	Parent=Os05t0129900-02
Chr05	irgsp1_rep	mRNA	1752425	1755727	.	+	.	ID=Os05t0130100-00;Name=Os05t0130100-00;Locus_id=Os05g0130100;Note=Hypothetical conserved gene.;Transcript_evidence=CT836422 (DDBJ%2C Best hit);ORF_evidence=B8AXL2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Gnk2-homologous domain (IPR002902),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os05t0130100-00;KEGG=Os05t0130100-00
Chr05	irgsp1_rep	five_prime_UTR	1752425	1752499	.	+	.	Parent=Os05t0130100-00
Chr05	irgsp1_rep	CDS	1752500	1753322	.	+	0	Parent=Os05t0130100-00
Chr05	irgsp1_rep	CDS	1753719	1753829	.	+	2	Parent=Os05t0130100-00
Chr05	irgsp1_rep	CDS	1753934	1754073	.	+	2	Parent=Os05t0130100-00
Chr05	irgsp1_rep	CDS	1754263	1754473	.	+	0	Parent=Os05t0130100-00
Chr05	irgsp1_rep	CDS	1754579	1754813	.	+	2	Parent=Os05t0130100-00
Chr05	irgsp1_rep	CDS	1754941	1755094	.	+	1	Parent=Os05t0130100-00
Chr05	irgsp1_rep	CDS	1755186	1755212	.	+	0	Parent=Os05t0130100-00
Chr05	irgsp1_rep	three_prime_UTR	1755213	1755727	.	+	.	Parent=Os05t0130100-00
Chr05	irgsp1_rep	mRNA	1761969	1762756	.	+	.	ID=Os05t0130200-01;Name=Os05t0130200-01;Locus_id=Os05g0130200;Note=Conserved hypothetical protein.;Transcript_evidence=AK062489 (DDBJ%2C Best hit);ORF_evidence=Q65XU4 (UniProt);NIAS_FLcDNA=001-103-H04;Expression=AK062489;TENOR=Os05t0130200-01;KEGG=Os05t0130200-01
Chr05	irgsp1_rep	five_prime_UTR	1761969	1762036	.	+	.	Parent=Os05t0130200-01
Chr05	irgsp1_rep	CDS	1762037	1762039	.	+	0	Parent=Os05t0130200-01
Chr05	irgsp1_rep	CDS	1762209	1762436	.	+	0	Parent=Os05t0130200-01
Chr05	irgsp1_rep	three_prime_UTR	1762437	1762756	.	+	.	Parent=Os05t0130200-01
Chr05	irgsp1_rep	mRNA	1781532	1782890	.	+	.	ID=Os05t0130300-01;Name=Os05t0130300-01;Locus_id=Os05g0130300;Note=Conserved hypothetical protein.;Transcript_evidence=AK121958 (DDBJ%2C Best hit);ORF_evidence=B9FMA2 (UniProt);NIAS_FLcDNA=J033107M24;Expression=AK121958;TENOR=Os05t0130300-01;KEGG=Os05t0130300-01
Chr05	irgsp1_rep	five_prime_UTR	1781532	1781659	.	+	.	Parent=Os05t0130300-01
Chr05	irgsp1_rep	CDS	1781660	1781662	.	+	0	Parent=Os05t0130300-01
Chr05	irgsp1_rep	CDS	1782142	1782375	.	+	0	Parent=Os05t0130300-01
Chr05	irgsp1_rep	three_prime_UTR	1782376	1782890	.	+	.	Parent=Os05t0130300-01
Chr05	irgsp1_rep	mRNA	1785142	1791282	.	-	.	ID=Os05t0130400-01;Name=Os05t0130400-01;Locus_id=Os05g0130400;Note=Protein of unknown function DUF247%2C plant family protein.;Transcript_evidence=AK064692 (DDBJ%2C Best hit);ORF_evidence=B9FGV3 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);NIAS_FLcDNA=002-116-F01;Expression=AK064692;TENOR=Os05t0130400-01;KEGG=Os05t0130400-01
Chr05	irgsp1_rep	five_prime_UTR	1791276	1791282	.	-	.	Parent=Os05t0130400-01
Chr05	irgsp1_rep	CDS	1790830	1791275	.	-	0	Parent=Os05t0130400-01
Chr05	irgsp1_rep	CDS	1785872	1786814	.	-	1	Parent=Os05t0130400-01
Chr05	irgsp1_rep	CDS	1785516	1785755	.	-	0	Parent=Os05t0130400-01
Chr05	irgsp1_rep	three_prime_UTR	1785142	1785515	.	-	.	Parent=Os05t0130400-01
Chr05	irgsp1_rep	mRNA	1793765	1794879	.	-	.	ID=Os05t0130500-01;Name=Os05t0130500-01;Locus_id=Os05g0130500;Note=Hypothetical protein.;Transcript_evidence=AK121598 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033039M08;TENOR=Os05t0130500-01
Chr05	irgsp1_rep	five_prime_UTR	1794050	1794879	.	-	.	Parent=Os05t0130500-01
Chr05	irgsp1_rep	CDS	1793813	1794049	.	-	0	Parent=Os05t0130500-01
Chr05	irgsp1_rep	three_prime_UTR	1793765	1793812	.	-	.	Parent=Os05t0130500-01
Chr05	irgsp1_rep	mRNA	1796039	1796862	.	+	.	ID=Os05t0130600-01;Name=Os05t0130600-01;Locus_id=Os05g0130600;Note=Conserved hypothetical protein.;Transcript_evidence=AK063251 (DDBJ%2C Best hit);ORF_evidence=A2Y014 (UniProt);NIAS_FLcDNA=001-112-H04;Expression=AK063251;TENOR=Os05t0130600-01;KEGG=Os05t0130600-01
Chr05	irgsp1_rep	five_prime_UTR	1796039	1796078	.	+	.	Parent=Os05t0130600-01
Chr05	irgsp1_rep	CDS	1796079	1796081	.	+	0	Parent=Os05t0130600-01
Chr05	irgsp1_rep	CDS	1796329	1796562	.	+	0	Parent=Os05t0130600-01
Chr05	irgsp1_rep	three_prime_UTR	1796563	1796862	.	+	.	Parent=Os05t0130600-01
Chr05	irgsp1_rep	mRNA	1828268	1830051	.	-	.	ID=Os05t0131000-01;Name=Os05t0131000-01;Locus_id=Os05g0131000;Note=Protein of unknown function DUF247%2C plant family protein.;Transcript_evidence=AK109681 (DDBJ%2C Best hit);ORF_evidence=A2Y016 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);NIAS_FLcDNA=002-145-D01;Expression=AK109681;TENOR=Os05t0131000-01;KEGG=Os05t0131000-01
Chr05	irgsp1_rep	five_prime_UTR	1830031	1830051	.	-	.	Parent=Os05t0131000-01
Chr05	irgsp1_rep	CDS	1828447	1830030	.	-	0	Parent=Os05t0131000-01
Chr05	irgsp1_rep	three_prime_UTR	1828268	1828446	.	-	.	Parent=Os05t0131000-01
Chr05	irgsp1_rep	mRNA	1830765	1833326	.	-	.	ID=Os05t0131100-01;Name=Os05t0131100-01;Locus_id=Os05g0131100;Note=Conserved hypothetical protein.;Transcript_evidence=AK068008 (DDBJ%2C Best hit);ORF_evidence=XP_002440529.1 (RefSeq);NIAS_FLcDNA=J013130C19;Expression=AK068008;TENOR=Os05t0131100-01;KEGG=Os05t0131100-01
Chr05	irgsp1_rep	five_prime_UTR	1833272	1833326	.	-	.	Parent=Os05t0131100-01
Chr05	irgsp1_rep	CDS	1833149	1833271	.	-	0	Parent=Os05t0131100-01
Chr05	irgsp1_rep	CDS	1832957	1833055	.	-	0	Parent=Os05t0131100-01
Chr05	irgsp1_rep	CDS	1832204	1832308	.	-	0	Parent=Os05t0131100-01
Chr05	irgsp1_rep	CDS	1832011	1832110	.	-	0	Parent=Os05t0131100-01
Chr05	irgsp1_rep	CDS	1831767	1831858	.	-	2	Parent=Os05t0131100-01
Chr05	irgsp1_rep	CDS	1831597	1831677	.	-	0	Parent=Os05t0131100-01
Chr05	irgsp1_rep	CDS	1831363	1831431	.	-	0	Parent=Os05t0131100-01
Chr05	irgsp1_rep	CDS	1831070	1831213	.	-	0	Parent=Os05t0131100-01
Chr05	irgsp1_rep	three_prime_UTR	1830765	1831069	.	-	.	Parent=Os05t0131100-01
Chr05	irgsp1_rep	mRNA	1840616	1844553	.	-	.	ID=Os05t0131401-00;Name=Os05t0131401-00;Locus_id=Os05g0131401;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001174204.1 (RefSeq);TENOR=Os05t0131401-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	1844431	1844553	.	-	0	Parent=Os05t0131401-00
Chr05	irgsp1_rep	CDS	1844236	1844334	.	-	0	Parent=Os05t0131401-00
Chr05	irgsp1_rep	CDS	1842063	1842167	.	-	0	Parent=Os05t0131401-00
Chr05	irgsp1_rep	CDS	1841156	1841224	.	-	0	Parent=Os05t0131401-00
Chr05	irgsp1_rep	CDS	1840616	1840759	.	-	0	Parent=Os05t0131401-00
Chr05	irgsp1_rep	mRNA	1846078	1848763	.	-	.	ID=Os05t0131500-00;Name=Os05t0131500-00;Locus_id=Os05g0131500;Note=Ferroporti-1 domain containing protein.;Transcript_evidence=AK367810 (DDBJ);ORF_evidence=B9FGV7 (UniProt);GO=Biological Process: iron ion transmembrane transport (GO:0034755),Cellular Component: integral to membrane (GO:0016021),Molecular Function: iron ion transmembrane transporter activity (GO:0005381);InterPro=Ferroporti-1 (IPR009716);TENOR=Os05t0131500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	1848755	1848763	.	-	.	Parent=Os05t0131500-00
Chr05	irgsp1_rep	CDS	1848307	1848754	.	-	0	Parent=Os05t0131500-00
Chr05	irgsp1_rep	CDS	1848136	1848242	.	-	2	Parent=Os05t0131500-00
Chr05	irgsp1_rep	CDS	1847932	1848021	.	-	0	Parent=Os05t0131500-00
Chr05	irgsp1_rep	CDS	1847488	1847851	.	-	0	Parent=Os05t0131500-00
Chr05	irgsp1_rep	CDS	1847278	1847379	.	-	2	Parent=Os05t0131500-00
Chr05	irgsp1_rep	CDS	1847139	1847173	.	-	2	Parent=Os05t0131500-00
Chr05	irgsp1_rep	three_prime_UTR	1847011	1847138	.	-	.	Parent=Os05t0131500-00
Chr05	irgsp1_rep	three_prime_UTR	1846778	1846931	.	-	.	Parent=Os05t0131500-00
Chr05	irgsp1_rep	three_prime_UTR	1846459	1846682	.	-	.	Parent=Os05t0131500-00
Chr05	irgsp1_rep	three_prime_UTR	1846078	1846378	.	-	.	Parent=Os05t0131500-00
Chr05	irgsp1_rep	mRNA	1859669	1863266	.	+	.	ID=Os05t0131900-01;Name=Os05t0131900-01;Locus_id=Os05g0131900;Note=Hypothetical conserved gene.;Transcript_evidence=AK065049 (DDBJ%2C Best hit);ORF_evidence=B8AXM4 (UniProt);NIAS_FLcDNA=J013001I13;Expression=AK065049;TENOR=Os05t0131900-01;KEGG=Os05t0131900-01
Chr05	irgsp1_rep	five_prime_UTR	1859669	1859983	.	+	.	Parent=Os05t0131900-01
Chr05	irgsp1_rep	five_prime_UTR	1861222	1861357	.	+	.	Parent=Os05t0131900-01
Chr05	irgsp1_rep	CDS	1861358	1861901	.	+	0	Parent=Os05t0131900-01
Chr05	irgsp1_rep	CDS	1862488	1862635	.	+	2	Parent=Os05t0131900-01
Chr05	irgsp1_rep	CDS	1862857	1862917	.	+	1	Parent=Os05t0131900-01
Chr05	irgsp1_rep	three_prime_UTR	1862918	1863266	.	+	.	Parent=Os05t0131900-01
Chr05	irgsp1_rep	mRNA	1859718	1863195	.	+	.	ID=Os05t0131900-02;Name=Os05t0131900-02;Locus_id=Os05g0131900;Note=Conserved hypothetical protein.;Transcript_evidence=AK061877 (DDBJ%2C Best hit);ORF_evidence=NP_001143966.1 (RefSeq);NIAS_FLcDNA=001-041-B01;TENOR=Os05t0131900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	1859718	1859983	.	+	.	Parent=Os05t0131900-02
Chr05	irgsp1_rep	five_prime_UTR	1861222	1861357	.	+	.	Parent=Os05t0131900-02
Chr05	irgsp1_rep	CDS	1861358	1861608	.	+	0	Parent=Os05t0131900-02
Chr05	irgsp1_rep	CDS	1861742	1861757	.	+	1	Parent=Os05t0131900-02
Chr05	irgsp1_rep	three_prime_UTR	1861758	1861901	.	+	.	Parent=Os05t0131900-02
Chr05	irgsp1_rep	three_prime_UTR	1862488	1862635	.	+	.	Parent=Os05t0131900-02
Chr05	irgsp1_rep	three_prime_UTR	1862857	1863195	.	+	.	Parent=Os05t0131900-02
Chr05	irgsp1_rep	mRNA	1864582	1866585	.	+	.	ID=Os05t0132000-00;Name=Os05t0132000-00;Locus_id=Os05g0132000;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=BT067387 (DDBJ);ORF_evidence=NP_001054555.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os05t0132000-00;KEGG=Os05t0132000-00
Chr05	irgsp1_rep	CDS	1864582	1866495	.	+	0	Parent=Os05t0132000-00
Chr05	irgsp1_rep	three_prime_UTR	1866496	1866585	.	+	.	Parent=Os05t0132000-00
Chr05	irgsp1_rep	mRNA	1866886	1873316	.	-	.	ID=Os05t0132100-02;Name=Os05t0132100-02;Locus_id=Os05g0132100;CGSNL Gene Symbol=LACS1;CGSNL Gene Name=LONG-CHAIN ACYL-COA SYNTHETASE 1;Oryzabase Gene Symbol Synonym(s)=OsLACS1;Oryzabase Gene Name Synonym(s)=long-chain acyl-CoA synthetase 1;Note=AMP-dependent synthetase and ligase domain containing protein.;Transcript_evidence=AK069689 (DDBJ%2C Best hit),AK105618 (DDBJ%2C Best hit);ORF_evidence=B7EY68 (UniProt);NIAS_FLcDNA=J023030H22,001-200-C01;Oryzabase=19595;Expression=AK069689;TENOR=Os05t0132100-02;KEGG=Os05t0132100-02
Chr05	irgsp1_rep	five_prime_UTR	1873256	1873316	.	-	.	Parent=Os05t0132100-02
Chr05	irgsp1_rep	five_prime_UTR	1872645	1872665	.	-	.	Parent=Os05t0132100-02
Chr05	irgsp1_rep	CDS	1872484	1872644	.	-	0	Parent=Os05t0132100-02
Chr05	irgsp1_rep	CDS	1871559	1871622	.	-	1	Parent=Os05t0132100-02
Chr05	irgsp1_rep	CDS	1871358	1871447	.	-	0	Parent=Os05t0132100-02
Chr05	irgsp1_rep	CDS	1871155	1871211	.	-	0	Parent=Os05t0132100-02
Chr05	irgsp1_rep	CDS	1871006	1871054	.	-	0	Parent=Os05t0132100-02
Chr05	irgsp1_rep	CDS	1870641	1870717	.	-	2	Parent=Os05t0132100-02
Chr05	irgsp1_rep	CDS	1870522	1870561	.	-	0	Parent=Os05t0132100-02
Chr05	irgsp1_rep	CDS	1870345	1870439	.	-	2	Parent=Os05t0132100-02
Chr05	irgsp1_rep	CDS	1870031	1870198	.	-	0	Parent=Os05t0132100-02
Chr05	irgsp1_rep	CDS	1869780	1869890	.	-	0	Parent=Os05t0132100-02
Chr05	irgsp1_rep	CDS	1869600	1869687	.	-	0	Parent=Os05t0132100-02
Chr05	irgsp1_rep	CDS	1869453	1869519	.	-	2	Parent=Os05t0132100-02
Chr05	irgsp1_rep	CDS	1869301	1869376	.	-	1	Parent=Os05t0132100-02
Chr05	irgsp1_rep	CDS	1869063	1869180	.	-	0	Parent=Os05t0132100-02
Chr05	irgsp1_rep	CDS	1868167	1868409	.	-	2	Parent=Os05t0132100-02
Chr05	irgsp1_rep	CDS	1867953	1868092	.	-	2	Parent=Os05t0132100-02
Chr05	irgsp1_rep	CDS	1867674	1867856	.	-	0	Parent=Os05t0132100-02
Chr05	irgsp1_rep	CDS	1867341	1867460	.	-	0	Parent=Os05t0132100-02
Chr05	irgsp1_rep	CDS	1867169	1867231	.	-	0	Parent=Os05t0132100-02
Chr05	irgsp1_rep	three_prime_UTR	1866886	1867168	.	-	.	Parent=Os05t0132100-02
Chr05	irgsp1_rep	mRNA	1867386	1871382	.	-	.	ID=Os05t0132100-03;Name=Os05t0132100-03;Locus_id=Os05g0132100;CGSNL Gene Symbol=LACS1;CGSNL Gene Name=LONG-CHAIN ACYL-COA SYNTHETASE 1;Oryzabase Gene Symbol Synonym(s)=OsLACS1;Oryzabase Gene Name Synonym(s)=long-chain acyl-CoA synthetase 1;Note=Similar to cDNA clone:001-200-C01%2C full insert sequence.;Transcript_evidence=AK059083 (DDBJ%2C Best hit);ORF_evidence=B7EY68 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873),AMP-binding%2C conserved site (IPR020845);NIAS_FLcDNA=001-022-B01;Oryzabase=19595;Expression=AK059083;TENOR=Os05t0132100-03;KEGG=Os05t0132100-03 (EC:6.2.1.3)
Chr05	irgsp1_rep	five_prime_UTR	1871382	1871382	.	-	.	Parent=Os05t0132100-03
Chr05	irgsp1_rep	CDS	1871358	1871381	.	-	0	Parent=Os05t0132100-03
Chr05	irgsp1_rep	CDS	1871155	1871211	.	-	0	Parent=Os05t0132100-03
Chr05	irgsp1_rep	CDS	1871006	1871054	.	-	0	Parent=Os05t0132100-03
Chr05	irgsp1_rep	CDS	1870641	1870717	.	-	2	Parent=Os05t0132100-03
Chr05	irgsp1_rep	CDS	1870522	1870561	.	-	0	Parent=Os05t0132100-03
Chr05	irgsp1_rep	CDS	1870345	1870439	.	-	2	Parent=Os05t0132100-03
Chr05	irgsp1_rep	CDS	1870031	1870198	.	-	0	Parent=Os05t0132100-03
Chr05	irgsp1_rep	CDS	1869780	1869890	.	-	0	Parent=Os05t0132100-03
Chr05	irgsp1_rep	CDS	1869600	1869687	.	-	0	Parent=Os05t0132100-03
Chr05	irgsp1_rep	CDS	1869453	1869519	.	-	2	Parent=Os05t0132100-03
Chr05	irgsp1_rep	CDS	1869301	1869376	.	-	1	Parent=Os05t0132100-03
Chr05	irgsp1_rep	CDS	1869063	1869180	.	-	0	Parent=Os05t0132100-03
Chr05	irgsp1_rep	CDS	1868167	1868409	.	-	2	Parent=Os05t0132100-03
Chr05	irgsp1_rep	CDS	1867953	1868092	.	-	2	Parent=Os05t0132100-03
Chr05	irgsp1_rep	CDS	1867674	1867856	.	-	0	Parent=Os05t0132100-03
Chr05	irgsp1_rep	CDS	1867386	1867460	.	-	0	Parent=Os05t0132100-03
Chr05	irgsp1_rep	mRNA	1866995	1867369	.	-	.	ID=Os05t0132100-04;Name=Os05t0132100-04;Locus_id=Os05g0132100;CGSNL Gene Symbol=LACS1;CGSNL Gene Name=LONG-CHAIN ACYL-COA SYNTHETASE 1;Oryzabase Gene Symbol Synonym(s)=OsLACS1;Oryzabase Gene Name Synonym(s)=long-chain acyl-CoA synthetase 1;Note=Similar to cDNA clone:001-200-C01%2C full insert sequence.;Transcript_evidence=AK060660 (DDBJ%2C Best hit);ORF_evidence=B7EY68 (UniProt);NIAS_FLcDNA=001-028-A12;Oryzabase=19595;Expression=AK060660;TENOR=Os05t0132100-04;KEGG=Os05t0132100-04
Chr05	irgsp1_rep	five_prime_UTR	1867368	1867369	.	-	.	Parent=Os05t0132100-04
Chr05	irgsp1_rep	CDS	1867341	1867367	.	-	0	Parent=Os05t0132100-04
Chr05	irgsp1_rep	CDS	1867169	1867231	.	-	0	Parent=Os05t0132100-04
Chr05	irgsp1_rep	three_prime_UTR	1866995	1867168	.	-	.	Parent=Os05t0132100-04
Chr05	irgsp1_rep	mRNA	1882395	1882963	.	+	.	ID=Os05t0132300-01;Name=Os05t0132300-01;Locus_id=Os05g0132300;Note=Hypothetical protein.;Transcript_evidence=AK064667 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-115-B12;TENOR=Os05t0132300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	1882395	1882395	.	+	.	Parent=Os05t0132300-01
Chr05	irgsp1_rep	CDS	1882396	1882623	.	+	0	Parent=Os05t0132300-01
Chr05	irgsp1_rep	three_prime_UTR	1882624	1882963	.	+	.	Parent=Os05t0132300-01
Chr05	irgsp1_rep	mRNA	1885155	1887809	.	-	.	ID=Os05t0132400-01;Name=Os05t0132400-01;Locus_id=Os05g0132400;Note=Agenet domain containing protein.;Transcript_evidence=AK058597 (DDBJ%2C Best hit);ORF_evidence=B9FGW0 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=Agenet (IPR008395),Tudor-like%2C plant (IPR014002);NIAS_FLcDNA=001-017-H04;TENOR=Os05t0132400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	1887597	1887809	.	-	0	Parent=Os05t0132400-01
Chr05	irgsp1_rep	CDS	1885728	1886141	.	-	0	Parent=Os05t0132400-01
Chr05	irgsp1_rep	CDS	1885540	1885554	.	-	0	Parent=Os05t0132400-01
Chr05	irgsp1_rep	three_prime_UTR	1885155	1885539	.	-	.	Parent=Os05t0132400-01
Chr05	irgsp1_rep	mRNA	1889866	1895910	.	-	.	ID=Os05t0132500-01;Name=Os05t0132500-01;Locus_id=Os05g0132500;Note=Protein of unknown function DUF246%2C plant family protein.;Transcript_evidence=AK101319 (DDBJ%2C Best hit);ORF_evidence=NP_001152557.1 (RefSeq);InterPro=GDP-fucose protein O-fucosyltransferase (IPR019378);NIAS_FLcDNA=J033034D15;Expression=AK101319;TENOR=Os05t0132500-01;KEGG=Os05t0132500-01
Chr05	irgsp1_rep	five_prime_UTR	1895662	1895910	.	-	.	Parent=Os05t0132500-01
Chr05	irgsp1_rep	five_prime_UTR	1894590	1894617	.	-	.	Parent=Os05t0132500-01
Chr05	irgsp1_rep	CDS	1894437	1894589	.	-	0	Parent=Os05t0132500-01
Chr05	irgsp1_rep	CDS	1894189	1894273	.	-	0	Parent=Os05t0132500-01
Chr05	irgsp1_rep	CDS	1893756	1893823	.	-	2	Parent=Os05t0132500-01
Chr05	irgsp1_rep	CDS	1893592	1893680	.	-	0	Parent=Os05t0132500-01
Chr05	irgsp1_rep	CDS	1893235	1893478	.	-	1	Parent=Os05t0132500-01
Chr05	irgsp1_rep	CDS	1893045	1893157	.	-	0	Parent=Os05t0132500-01
Chr05	irgsp1_rep	CDS	1892615	1892738	.	-	1	Parent=Os05t0132500-01
Chr05	irgsp1_rep	three_prime_UTR	1892415	1892614	.	-	.	Parent=Os05t0132500-01
Chr05	irgsp1_rep	three_prime_UTR	1890848	1891401	.	-	.	Parent=Os05t0132500-01
Chr05	irgsp1_rep	three_prime_UTR	1889866	1890758	.	-	.	Parent=Os05t0132500-01
Chr05	irgsp1_rep	mRNA	1889983	1894569	.	-	.	ID=Os05t0132500-02;Name=Os05t0132500-02;Locus_id=Os05g0132500;Note=Similar to auxin-independent growth promoter protein.;Transcript_evidence=AK060754 (DDBJ%2C Best hit);ORF_evidence=NP_001152557.1 (RefSeq);InterPro=GDP-fucose protein O-fucosyltransferase (IPR019378);NIAS_FLcDNA=001-032-G12;Expression=AK060754;TENOR=Os05t0132500-02;KEGG=Os05t0132500-02
Chr05	irgsp1_rep	five_prime_UTR	1894569	1894569	.	-	.	Parent=Os05t0132500-02
Chr05	irgsp1_rep	CDS	1894437	1894568	.	-	0	Parent=Os05t0132500-02
Chr05	irgsp1_rep	CDS	1894189	1894273	.	-	0	Parent=Os05t0132500-02
Chr05	irgsp1_rep	CDS	1893756	1893823	.	-	2	Parent=Os05t0132500-02
Chr05	irgsp1_rep	CDS	1893592	1893680	.	-	0	Parent=Os05t0132500-02
Chr05	irgsp1_rep	CDS	1893235	1893478	.	-	1	Parent=Os05t0132500-02
Chr05	irgsp1_rep	CDS	1893045	1893157	.	-	0	Parent=Os05t0132500-02
Chr05	irgsp1_rep	CDS	1892648	1892738	.	-	1	Parent=Os05t0132500-02
Chr05	irgsp1_rep	CDS	1892415	1892543	.	-	0	Parent=Os05t0132500-02
Chr05	irgsp1_rep	CDS	1890848	1891401	.	-	0	Parent=Os05t0132500-02
Chr05	irgsp1_rep	CDS	1890320	1890758	.	-	1	Parent=Os05t0132500-02
Chr05	irgsp1_rep	three_prime_UTR	1889983	1890319	.	-	.	Parent=Os05t0132500-02
Chr05	irgsp1_rep	mRNA	1890974	1891459	.	+	.	ID=Os05t0132601-00;Name=Os05t0132601-00;Locus_id=Os05g0132601;Note=Non-protein coding transcript.;Transcript_evidence=EU948431 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0132601-00
Chr05	irgsp1_rep	exon	1890974	1891459	.	+	.	Parent=Os05t0132601-00
Chr05	irgsp1_rep	mRNA	1900860	1901173	.	+	.	ID=Os05t0132650-00;Name=Os05t0132650-00;Locus_id=Os05g0132650;Note=Non-protein coding transcript.;Transcript_evidence=EU968130 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0132650-00
Chr05	irgsp1_rep	exon	1900860	1901173	.	+	.	Parent=Os05t0132650-00
Chr05	irgsp1_rep	mRNA	1907665	1909355	.	-	.	ID=Os05t0132700-01;Name=Os05t0132700-01;Locus_id=Os05g0132700;Note=Similar to R2R3 Myb-like protein.;Transcript_evidence=AK243659 (DDBJ%2C Best hit);ORF_evidence=B2KNR2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J100089B08;TENOR=Os05t0132700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	1908563	1909355	.	-	.	Parent=Os05t0132700-01
Chr05	irgsp1_rep	CDS	1907915	1908562	.	-	0	Parent=Os05t0132700-01
Chr05	irgsp1_rep	three_prime_UTR	1907665	1907914	.	-	.	Parent=Os05t0132700-01
Chr05	irgsp1_rep	mRNA	1910293	1910914	.	+	.	ID=Os05t0132800-01;Name=Os05t0132800-01;Locus_id=Os05g0132800;Note=Conserved hypothetical protein.;Transcript_evidence=AK108629 (DDBJ%2C Best hit);ORF_evidence=Q69S99 (UniProt);NIAS_FLcDNA=002-147-E12;TENOR=Os05t0132800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	1910293	1910487	.	+	.	Parent=Os05t0132800-01
Chr05	irgsp1_rep	CDS	1910488	1910760	.	+	0	Parent=Os05t0132800-01
Chr05	irgsp1_rep	three_prime_UTR	1910761	1910914	.	+	.	Parent=Os05t0132800-01
Chr05	irgsp1_rep	mRNA	1924276	1927242	.	-	.	ID=Os05t0133100-01;Name=Os05t0133100-01;Locus_id=Os05g0133100;Oryzabase Gene Symbol Synonym(s)=OsGlnB;Note=Similar to PII protein (Fragment).;Transcript_evidence=AK068407 (DDBJ%2C Best hit),AK099152 (DDBJ%2C Best hit);ORF_evidence=Q6AUR2 (UniProt);GO=Biological Process: regulation of nitrogen utilization (GO:0006808),Molecular Function: enzyme regulator activity (GO:0030234);InterPro=Nitrogen regulatory protein PII (IPR002187),Nitrogen regulatory PII-like%2C alpha/beta (IPR011322),Nitrogen regulatory protein PII/ATP phosphoribosyltransferase%2C C-terminal (IPR015867),Nitrogen regulatory protein PII%2C conserved site (IPR017918);NIAS_FLcDNA=J013149B08,J023070H02;Oryzabase=14064;Expression=AK068407;TENOR=Os05t0133100-01;KEGG=Os05t0133100-01
Chr05	irgsp1_rep	five_prime_UTR	1927196	1927242	.	-	.	Parent=Os05t0133100-01
Chr05	irgsp1_rep	CDS	1926970	1927195	.	-	0	Parent=Os05t0133100-01
Chr05	irgsp1_rep	CDS	1926805	1926850	.	-	2	Parent=Os05t0133100-01
Chr05	irgsp1_rep	CDS	1926681	1926708	.	-	1	Parent=Os05t0133100-01
Chr05	irgsp1_rep	CDS	1926513	1926600	.	-	0	Parent=Os05t0133100-01
Chr05	irgsp1_rep	CDS	1925375	1925442	.	-	2	Parent=Os05t0133100-01
Chr05	irgsp1_rep	CDS	1925060	1925129	.	-	0	Parent=Os05t0133100-01
Chr05	irgsp1_rep	CDS	1924491	1924603	.	-	2	Parent=Os05t0133100-01
Chr05	irgsp1_rep	three_prime_UTR	1924276	1924490	.	-	.	Parent=Os05t0133100-01
Chr05	irgsp1_rep	mRNA	1931890	1934198	.	+	.	ID=Os05t0133401-01;Name=Os05t0133401-01;Locus_id=Os05g0133401;CGSNL Gene Symbol=GELP60;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 60;Oryzabase Gene Symbol Synonym(s)=OsGELP60;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 60;Note=Esterase%2C SGNH hydrolase-type domain containing protein.;Transcript_evidence=AK289158 (DDBJ%2C Best hit);ORF_evidence=NP_001174207.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=J100001J16;Oryzabase=11010;TENOR=Os05t0133401-01;KEGG=Os05t0133401-01
Chr05	irgsp1_rep	five_prime_UTR	1931890	1931977	.	+	.	Parent=Os05t0133401-01
Chr05	irgsp1_rep	CDS	1931978	1932212	.	+	0	Parent=Os05t0133401-01
Chr05	irgsp1_rep	CDS	1932920	1933782	.	+	2	Parent=Os05t0133401-01
Chr05	irgsp1_rep	three_prime_UTR	1933783	1934198	.	+	.	Parent=Os05t0133401-01
Chr05	irgsp1_rep	mRNA	1965596	1974888	.	+	.	ID=Os05t0133900-01;Name=Os05t0133900-01;Locus_id=Os05g0133900;CGSNL Gene Symbol=DRM3;CGSNL Gene Name=DOMAINS REARRANGED METHYLTRANSFERASE 3;Oryzabase Gene Symbol Synonym(s)=OsDRM3%2C DRM2-2;Oryzabase Gene Name Synonym(s)=domains rearranged methyltransferase 3%2C domains rearranged methylase 3;Note=Similar to Shaggy-related protein kinase eta (EC 2.7.1.-) (ASK-eta) (BRASSINOSTEROID-INSENSITIVE 2) (ULTRACURVATA1).;Transcript_evidence=AK067302 (DDBJ%2C Best hit);ORF_evidence=NP_001105094.1 (RefSeq);NIAS_FLcDNA=J013102H14;Oryzabase=10399;Expression=AK067302;TENOR=Os05t0133900-01;KEGG=Os05t0133900-01
Chr05	irgsp1_rep	five_prime_UTR	1965596	1966028	.	+	.	Parent=Os05t0133900-01
Chr05	irgsp1_rep	five_prime_UTR	1967315	1967354	.	+	.	Parent=Os05t0133900-01
Chr05	irgsp1_rep	CDS	1967355	1967357	.	+	0	Parent=Os05t0133900-01
Chr05	irgsp1_rep	CDS	1967468	1967581	.	+	0	Parent=Os05t0133900-01
Chr05	irgsp1_rep	CDS	1968557	1968653	.	+	0	Parent=Os05t0133900-01
Chr05	irgsp1_rep	CDS	1968789	1968835	.	+	2	Parent=Os05t0133900-01
Chr05	irgsp1_rep	CDS	1969225	1969338	.	+	0	Parent=Os05t0133900-01
Chr05	irgsp1_rep	CDS	1969423	1969516	.	+	0	Parent=Os05t0133900-01
Chr05	irgsp1_rep	CDS	1969759	1969856	.	+	2	Parent=Os05t0133900-01
Chr05	irgsp1_rep	CDS	1970755	1970854	.	+	0	Parent=Os05t0133900-01
Chr05	irgsp1_rep	CDS	1971844	1971920	.	+	2	Parent=Os05t0133900-01
Chr05	irgsp1_rep	CDS	1972223	1973470	.	+	0	Parent=Os05t0133900-01
Chr05	irgsp1_rep	CDS	1974252	1974263	.	+	0	Parent=Os05t0133900-01
Chr05	irgsp1_rep	three_prime_UTR	1974264	1974888	.	+	.	Parent=Os05t0133900-01
Chr05	irgsp1_rep	mRNA	1965596	1973699	.	+	.	ID=Os05t0133900-02;Name=Os05t0133900-02;Locus_id=Os05g0133900;CGSNL Gene Symbol=DRM3;CGSNL Gene Name=DOMAINS REARRANGED METHYLTRANSFERASE 3;Oryzabase Gene Symbol Synonym(s)=OsDRM3%2C DRM2-2;Oryzabase Gene Name Synonym(s)=domains rearranged methyltransferase 3%2C domains rearranged methylase 3;Note=Similar to DNA methyl transferase 106.;Transcript_evidence=AK063482 (DDBJ%2C Best hit);ORF_evidence=NP_001105094.1 (RefSeq);NIAS_FLcDNA=001-116-B11;Oryzabase=10399;Expression=AK063482;TENOR=Os05t0133900-02;KEGG=Os05t0133900-02
Chr05	irgsp1_rep	five_prime_UTR	1965596	1966028	.	+	.	Parent=Os05t0133900-02
Chr05	irgsp1_rep	five_prime_UTR	1967315	1967354	.	+	.	Parent=Os05t0133900-02
Chr05	irgsp1_rep	CDS	1967355	1967357	.	+	0	Parent=Os05t0133900-02
Chr05	irgsp1_rep	CDS	1967468	1967581	.	+	0	Parent=Os05t0133900-02
Chr05	irgsp1_rep	CDS	1968557	1968653	.	+	0	Parent=Os05t0133900-02
Chr05	irgsp1_rep	CDS	1968789	1968835	.	+	2	Parent=Os05t0133900-02
Chr05	irgsp1_rep	CDS	1969225	1969338	.	+	0	Parent=Os05t0133900-02
Chr05	irgsp1_rep	CDS	1969423	1969516	.	+	0	Parent=Os05t0133900-02
Chr05	irgsp1_rep	CDS	1969759	1969856	.	+	2	Parent=Os05t0133900-02
Chr05	irgsp1_rep	CDS	1970755	1970854	.	+	0	Parent=Os05t0133900-02
Chr05	irgsp1_rep	CDS	1971844	1971920	.	+	2	Parent=Os05t0133900-02
Chr05	irgsp1_rep	CDS	1972223	1973521	.	+	0	Parent=Os05t0133900-02
Chr05	irgsp1_rep	three_prime_UTR	1973522	1973699	.	+	.	Parent=Os05t0133900-02
Chr05	irgsp1_rep	mRNA	1974067	1977836	.	-	.	ID=Os05t0134000-01;Name=Os05t0134000-01;Locus_id=Os05g0134000;Oryzabase Gene Symbol Synonym(s)=OsSK13/OsGSK6%2C OsSK13%2C OsGSK6%2C SK13%2C GSK6;Oryzabase Gene Name Synonym(s)=Protein kinase-alfalfa (MSK-3) homolog%2C GSK3/SHAGGY-Like Kinase 13%2C GSK3-like Kinase 6;Note=Similar to Glycogen synthase kinase.;Transcript_evidence=AK064884 (DDBJ%2C Best hit);ORF_evidence=Q1AMT7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013000K07;Oryzabase=17749;Expression=AK064884;TENOR=Os05t0134000-01;KEGG=Os05t0134000-01 (EC:2.7.11.26)
Chr05	irgsp1_rep	five_prime_UTR	1977684	1977836	.	-	.	Parent=Os05t0134000-01
Chr05	irgsp1_rep	five_prime_UTR	1976800	1976866	.	-	.	Parent=Os05t0134000-01
Chr05	irgsp1_rep	CDS	1976680	1976799	.	-	0	Parent=Os05t0134000-01
Chr05	irgsp1_rep	CDS	1976508	1976600	.	-	0	Parent=Os05t0134000-01
Chr05	irgsp1_rep	CDS	1976334	1976393	.	-	0	Parent=Os05t0134000-01
Chr05	irgsp1_rep	CDS	1975955	1976227	.	-	0	Parent=Os05t0134000-01
Chr05	irgsp1_rep	CDS	1975795	1975869	.	-	0	Parent=Os05t0134000-01
Chr05	irgsp1_rep	CDS	1975620	1975676	.	-	0	Parent=Os05t0134000-01
Chr05	irgsp1_rep	CDS	1975400	1975540	.	-	0	Parent=Os05t0134000-01
Chr05	irgsp1_rep	CDS	1975258	1975308	.	-	0	Parent=Os05t0134000-01
Chr05	irgsp1_rep	CDS	1975086	1975181	.	-	0	Parent=Os05t0134000-01
Chr05	irgsp1_rep	CDS	1974825	1974998	.	-	0	Parent=Os05t0134000-01
Chr05	irgsp1_rep	three_prime_UTR	1974642	1974824	.	-	.	Parent=Os05t0134000-01
Chr05	irgsp1_rep	three_prime_UTR	1974067	1974541	.	-	.	Parent=Os05t0134000-01
Chr05	irgsp1_rep	mRNA	1974028	1977831	.	-	.	ID=Os05t0134000-03;Name=Os05t0134000-03;Locus_id=Os05g0134000;Oryzabase Gene Symbol Synonym(s)=OsSK13/OsGSK6%2C OsSK13%2C OsGSK6%2C SK13%2C GSK6;Oryzabase Gene Name Synonym(s)=Protein kinase-alfalfa (MSK-3) homolog%2C GSK3/SHAGGY-Like Kinase 13%2C GSK3-like Kinase 6;Note=Similar to Shaggy-related protein kinase eta (EC 2.7.1.-) (ASK-eta) (BRASSINOSTEROID-INSENSITIVE 2) (ULTRACURVATA1).;Transcript_evidence=AK121623 (DDBJ%2C Best hit),AK058276 (DDBJ%2C Best hit);ORF_evidence=Q1AMT7 (UniProt);NIAS_FLcDNA=J033045G07,001-013-C05;Oryzabase=17749;Expression=AK121623;TENOR=Os05t0134000-03;KEGG=Os05t0134000-03 (EC:2.7.11.26)
Chr05	irgsp1_rep	five_prime_UTR	1977684	1977831	.	-	.	Parent=Os05t0134000-03
Chr05	irgsp1_rep	five_prime_UTR	1976800	1976866	.	-	.	Parent=Os05t0134000-03
Chr05	irgsp1_rep	CDS	1976680	1976799	.	-	0	Parent=Os05t0134000-03
Chr05	irgsp1_rep	CDS	1976508	1976600	.	-	0	Parent=Os05t0134000-03
Chr05	irgsp1_rep	CDS	1976334	1976393	.	-	0	Parent=Os05t0134000-03
Chr05	irgsp1_rep	CDS	1975955	1976227	.	-	0	Parent=Os05t0134000-03
Chr05	irgsp1_rep	CDS	1975795	1975869	.	-	0	Parent=Os05t0134000-03
Chr05	irgsp1_rep	CDS	1975620	1975676	.	-	0	Parent=Os05t0134000-03
Chr05	irgsp1_rep	CDS	1975400	1975540	.	-	0	Parent=Os05t0134000-03
Chr05	irgsp1_rep	CDS	1975258	1975308	.	-	0	Parent=Os05t0134000-03
Chr05	irgsp1_rep	CDS	1975086	1975181	.	-	0	Parent=Os05t0134000-03
Chr05	irgsp1_rep	CDS	1974915	1974998	.	-	0	Parent=Os05t0134000-03
Chr05	irgsp1_rep	CDS	1974642	1974744	.	-	0	Parent=Os05t0134000-03
Chr05	irgsp1_rep	CDS	1974459	1974541	.	-	2	Parent=Os05t0134000-03
Chr05	irgsp1_rep	three_prime_UTR	1974028	1974458	.	-	.	Parent=Os05t0134000-03
Chr05	irgsp1_rep	mRNA	1994244	1996880	.	+	.	ID=Os05t0134200-01;Name=Os05t0134200-01;Locus_id=Os05g0134200;Oryzabase Gene Symbol Synonym(s)=OsPP2C47%2C PP2C47%2C OsPP72;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C47%2C protein phosphatase 2C 47%2C protein phosphatase 72;Note=Similar to Protein phosphatase-2C.;Transcript_evidence=AK067074 (DDBJ%2C Best hit);ORF_evidence=NP_001152937.1 (RefSeq);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J013093M04;Oryzabase=17921;Expression=AK067074;TENOR=Os05t0134200-01;KEGG=Os05t0134200-01 (EC:3.1.3.16)
Chr05	irgsp1_rep	five_prime_UTR	1994244	1994441	.	+	.	Parent=Os05t0134200-01
Chr05	irgsp1_rep	CDS	1994442	1994600	.	+	0	Parent=Os05t0134200-01
Chr05	irgsp1_rep	CDS	1995407	1995598	.	+	0	Parent=Os05t0134200-01
Chr05	irgsp1_rep	CDS	1995712	1995947	.	+	0	Parent=Os05t0134200-01
Chr05	irgsp1_rep	CDS	1996037	1996619	.	+	1	Parent=Os05t0134200-01
Chr05	irgsp1_rep	three_prime_UTR	1996620	1996880	.	+	.	Parent=Os05t0134200-01
Chr05	irgsp1_rep	mRNA	1998562	2002856	.	-	.	ID=Os05t0134300-01;Name=Os05t0134300-01;Locus_id=Os05g0134300;Note=Protein of unknown function DUF408 family protein.;Transcript_evidence=AK287872 (DDBJ%2C Best hit);ORF_evidence=Q6AVZ9 (UniProt);InterPro=Protein of unknown function DUF408 (IPR007308);NIAS_FLcDNA=J065204K23;TENOR=Os05t0134300-01;KEGG=Os05t0134300-01
Chr05	irgsp1_rep	five_prime_UTR	2002788	2002856	.	-	.	Parent=Os05t0134300-01
Chr05	irgsp1_rep	CDS	2002157	2002787	.	-	0	Parent=Os05t0134300-01
Chr05	irgsp1_rep	CDS	2000262	2001071	.	-	2	Parent=Os05t0134300-01
Chr05	irgsp1_rep	CDS	1999962	2000176	.	-	2	Parent=Os05t0134300-01
Chr05	irgsp1_rep	CDS	1999608	1999871	.	-	0	Parent=Os05t0134300-01
Chr05	irgsp1_rep	CDS	1998944	1999099	.	-	0	Parent=Os05t0134300-01
Chr05	irgsp1_rep	CDS	1998742	1998846	.	-	0	Parent=Os05t0134300-01
Chr05	irgsp1_rep	three_prime_UTR	1998562	1998741	.	-	.	Parent=Os05t0134300-01
Chr05	irgsp1_rep	mRNA	2010153	2014927	.	+	.	ID=Os05t0134400-01;Name=Os05t0134400-01;Locus_id=Os05g0134400;Oryzabase Gene Symbol Synonym(s)=prx65%2C PRX65%2C OsPRX65;Oryzabase Gene Name Synonym(s)=class III peroxidase 65;Note=Haem peroxidase%2C plant/fungal/bacterial family protein.;Transcript_evidence=AK061809 (DDBJ%2C Best hit);ORF_evidence=NP_001152255.1 (RefSeq);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793);NIAS_FLcDNA=001-040-A10;Oryzabase=14590;Expression=AK061809;TENOR=Os05t0134400-01;KEGG=Os05t0134400-01
Chr05	irgsp1_rep	five_prime_UTR	2010153	2010287	.	+	.	Parent=Os05t0134400-01
Chr05	irgsp1_rep	CDS	2010288	2010317	.	+	0	Parent=Os05t0134400-01
Chr05	irgsp1_rep	CDS	2013822	2013839	.	+	0	Parent=Os05t0134400-01
Chr05	irgsp1_rep	CDS	2013945	2014514	.	+	0	Parent=Os05t0134400-01
Chr05	irgsp1_rep	three_prime_UTR	2014515	2014927	.	+	.	Parent=Os05t0134400-01
Chr05	irgsp1_rep	mRNA	2010153	2014950	.	+	.	ID=Os05t0134400-02;Name=Os05t0134400-02;Locus_id=Os05g0134400;Oryzabase Gene Symbol Synonym(s)=prx65%2C PRX65%2C OsPRX65;Oryzabase Gene Name Synonym(s)=class III peroxidase 65;Note=Similar to peroxidase 1.;Transcript_evidence=AK119205 (DDBJ%2C Best hit),AK122031 (DDBJ%2C Best hit);ORF_evidence=NP_001152255.1 (RefSeq);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=001-041-D11,J033112G04;Oryzabase=14590;TENOR=Os05t0134400-02
Chr05	irgsp1_rep	five_prime_UTR	2010153	2010287	.	+	.	Parent=Os05t0134400-02
Chr05	irgsp1_rep	CDS	2010288	2010500	.	+	0	Parent=Os05t0134400-02
Chr05	irgsp1_rep	CDS	2013699	2014514	.	+	0	Parent=Os05t0134400-02
Chr05	irgsp1_rep	three_prime_UTR	2014515	2014950	.	+	.	Parent=Os05t0134400-02
Chr05	irgsp1_rep	mRNA	2027782	2030021	.	+	.	ID=Os05t0134700-01;Name=Os05t0134700-01;Locus_id=Os05g0134700;Oryzabase Gene Symbol Synonym(s)=prx66;Oryzabase Gene Name Synonym(s)=class III peroxidase 66;Note=Haem peroxidase family protein.;Transcript_evidence=AK064360 (DDBJ%2C Best hit),AK099362 (DDBJ%2C Best hit);ORF_evidence=Q5U1M7 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=002-108-B09,J033048I06;Oryzabase=14258;TENOR=Os05t0134700-01
Chr05	irgsp1_rep	five_prime_UTR	2027782	2027869	.	+	.	Parent=Os05t0134700-01
Chr05	irgsp1_rep	CDS	2027870	2028094	.	+	0	Parent=Os05t0134700-01
Chr05	irgsp1_rep	CDS	2028970	2029794	.	+	0	Parent=Os05t0134700-01
Chr05	irgsp1_rep	three_prime_UTR	2029795	2030021	.	+	.	Parent=Os05t0134700-01
Chr05	irgsp1_rep	mRNA	2027813	2029998	.	+	.	ID=Os05t0134700-02;Name=Os05t0134700-02;Locus_id=Os05g0134700;Oryzabase Gene Symbol Synonym(s)=prx66;Oryzabase Gene Name Synonym(s)=class III peroxidase 66;Note=Haem peroxidase family protein.;Transcript_evidence=AK102034 (DDBJ%2C Best hit);ORF_evidence=Q5U1M7 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J033081B21;Oryzabase=14258;Expression=AK102034;TENOR=Os05t0134700-02;KEGG=Os05t0134700-02
Chr05	irgsp1_rep	five_prime_UTR	2027813	2027869	.	+	.	Parent=Os05t0134700-02
Chr05	irgsp1_rep	CDS	2027870	2028094	.	+	0	Parent=Os05t0134700-02
Chr05	irgsp1_rep	CDS	2028970	2029794	.	+	0	Parent=Os05t0134700-02
Chr05	irgsp1_rep	three_prime_UTR	2029795	2029998	.	+	.	Parent=Os05t0134700-02
Chr05	irgsp1_rep	mRNA	2044855	2046373	.	+	.	ID=Os05t0134800-00;Name=Os05t0134800-00;Locus_id=Os05g0134800;Oryzabase Gene Symbol Synonym(s)=prx67;Oryzabase Gene Name Synonym(s)=class III peroxidase 67;Note=Haem peroxidase family protein.;Transcript_evidence=AK364021 (DDBJ);ORF_evidence=Q5U1M6 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);Oryzabase=14591;TENOR=Os05t0134800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	2044855	2045277	.	+	0	Parent=Os05t0134800-00
Chr05	irgsp1_rep	CDS	2045418	2046251	.	+	0	Parent=Os05t0134800-00
Chr05	irgsp1_rep	three_prime_UTR	2046252	2046373	.	+	.	Parent=Os05t0134800-00
Chr05	irgsp1_rep	mRNA	2050494	2052107	.	+	.	ID=Os05t0135000-01;Name=Os05t0135000-01;Locus_id=Os05g0135000;Oryzabase Gene Symbol Synonym(s)=prx68;Oryzabase Gene Name Synonym(s)=class III peroxidase 68;Note=Haem peroxidase family protein.;Transcript_evidence=AK109054 (DDBJ%2C Best hit);ORF_evidence=Q5U1T6 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=002-154-E08;Oryzabase=14592;Expression=AK109054;TENOR=Os05t0135000-01;KEGG=Os05t0135000-01
Chr05	irgsp1_rep	five_prime_UTR	2050494	2050578	.	+	.	Parent=Os05t0135000-01
Chr05	irgsp1_rep	CDS	2050579	2050827	.	+	0	Parent=Os05t0135000-01
Chr05	irgsp1_rep	CDS	2051167	2051925	.	+	0	Parent=Os05t0135000-01
Chr05	irgsp1_rep	three_prime_UTR	2051926	2052107	.	+	.	Parent=Os05t0135000-01
Chr05	irgsp1_rep	mRNA	2053474	2057590	.	-	.	ID=Os05t0135100-00;Name=Os05t0135100-00;Locus_id=Os05g0135100;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001054571.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os05t0135100-00;KEGG=Os05t0135100-00
Chr05	irgsp1_rep	CDS	2056648	2057590	.	-	0	Parent=Os05t0135100-00
Chr05	irgsp1_rep	CDS	2054798	2054860	.	-	2	Parent=Os05t0135100-00
Chr05	irgsp1_rep	CDS	2053474	2054711	.	-	2	Parent=Os05t0135100-00
Chr05	irgsp1_rep	mRNA	2053517	2054148	.	+	.	ID=Os05t0135150-00;Name=Os05t0135150-00;Locus_id=Os05g0135150;Note=Non-protein coding transcript.;Transcript_evidence=FP093119 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0135150-00
Chr05	irgsp1_rep	exon	2053517	2054148	.	+	.	Parent=Os05t0135150-00
Chr05	irgsp1_rep	mRNA	2061827	2063241	.	+	.	ID=Os05t0135200-01;Name=Os05t0135200-01;Locus_id=Os05g0135200;Oryzabase Gene Symbol Synonym(s)=prx69;Oryzabase Gene Name Synonym(s)=class III peroxidase 69;Note=Plant peroxidase domain containing protein.;Transcript_evidence=AK243473 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J100072E18;Oryzabase=14593;TENOR=Os05t0135200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	2061827	2061853	.	+	.	Parent=Os05t0135200-01
Chr05	irgsp1_rep	CDS	2061854	2062150	.	+	0	Parent=Os05t0135200-01
Chr05	irgsp1_rep	CDS	2062260	2063018	.	+	0	Parent=Os05t0135200-01
Chr05	irgsp1_rep	three_prime_UTR	2063019	2063241	.	+	.	Parent=Os05t0135200-01
Chr05	irgsp1_rep	mRNA	2061995	2062783	.	-	.	ID=Os05t0135300-00;Name=Os05t0135300-00;Locus_id=Os05g0135300;Note=Hypothetical protein.;Transcript_evidence=BT084813 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0135300-00
Chr05	irgsp1_rep	five_prime_UTR	2062782	2062783	.	-	.	Parent=Os05t0135300-00
Chr05	irgsp1_rep	CDS	2062269	2062781	.	-	0	Parent=Os05t0135300-00
Chr05	irgsp1_rep	CDS	2062152	2062160	.	-	0	Parent=Os05t0135300-00
Chr05	irgsp1_rep	three_prime_UTR	2061995	2062151	.	-	.	Parent=Os05t0135300-00
Chr05	irgsp1_rep	mRNA	2073613	2075302	.	+	.	ID=Os05t0135400-01;Name=Os05t0135400-01;Locus_id=Os05g0135400;Oryzabase Gene Symbol Synonym(s)=prx70;Oryzabase Gene Name Synonym(s)=class III peroxidase 70;Note=Plant peroxidase domain containing protein.;Transcript_evidence=AK063587 (DDBJ%2C Best hit);ORF_evidence=Q5U1M3 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=001-118-A08;Oryzabase=14594;Expression=AK063587;TENOR=Os05t0135400-01;KEGG=Os05t0135400-01
Chr05	irgsp1_rep	five_prime_UTR	2073613	2073752	.	+	.	Parent=Os05t0135400-01
Chr05	irgsp1_rep	CDS	2073753	2073971	.	+	0	Parent=Os05t0135400-01
Chr05	irgsp1_rep	CDS	2074320	2074348	.	+	0	Parent=Os05t0135400-01
Chr05	irgsp1_rep	CDS	2074865	2075111	.	+	1	Parent=Os05t0135400-01
Chr05	irgsp1_rep	three_prime_UTR	2075112	2075302	.	+	.	Parent=Os05t0135400-01
Chr05	irgsp1_rep	mRNA	2074574	2075038	.	-	.	ID=Os05t0135450-00;Name=Os05t0135450-00;Locus_id=Os05g0135450;Note=Hypothetical protein.;Transcript_evidence=EU942261 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0135450-00
Chr05	irgsp1_rep	five_prime_UTR	2075037	2075038	.	-	.	Parent=Os05t0135450-00
Chr05	irgsp1_rep	CDS	2074574	2075036	.	-	0	Parent=Os05t0135450-00
Chr05	irgsp1_rep	mRNA	2080597	2082747	.	+	.	ID=Os05t0135500-01;Name=Os05t0135500-01;Locus_id=Os05g0135500;Oryzabase Gene Symbol Synonym(s)=prx71%2C Osprx71;Oryzabase Gene Name Synonym(s)=class III peroxidase 71%2C Peroxidase 63;Note=Haem peroxidase family protein.;Transcript_evidence=AK060998 (DDBJ%2C Best hit),AK061553 (DDBJ%2C Best hit),AK104219 (DDBJ%2C Best hit),AK104300 (DDBJ%2C Best hit),AK104641 (DDBJ%2C Best hit),AK106200 (DDBJ%2C Best hit),AK120246 (DDBJ%2C Best hit);ORF_evidence=Q5U1M2 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793);NIAS_FLcDNA=006-203-F03,006-311-B10,006-306-D07,001-010-F08,006-310-F02,001-208-F04,J013044L23;Oryzabase=14595;TENOR=Os05t0135500-01
Chr05	irgsp1_rep	five_prime_UTR	2080597	2080684	.	+	.	Parent=Os05t0135500-01
Chr05	irgsp1_rep	CDS	2080685	2080942	.	+	0	Parent=Os05t0135500-01
Chr05	irgsp1_rep	CDS	2081114	2081438	.	+	0	Parent=Os05t0135500-01
Chr05	irgsp1_rep	CDS	2082011	2082462	.	+	2	Parent=Os05t0135500-01
Chr05	irgsp1_rep	three_prime_UTR	2082463	2082747	.	+	.	Parent=Os05t0135500-01
Chr05	irgsp1_rep	mRNA	2089037	2091945	.	+	.	ID=Os05t0135700-01;Name=Os05t0135700-01;Locus_id=Os05g0135700;RAP-DB Gene Symbol Synonym(s)=OsSAMS1;RAP-DB Gene Name Synonym(s)=S-Adenosyl-l-methionine synthetase 1;Oryzabase Gene Symbol Synonym(s)=OsSAMS1%2C OS-SAMS1%2C OsSAMS%2C SAM%2C SAMS;Oryzabase Gene Name Synonym(s)=S-Adenosyl-l-methionine synthetase 1%2C S-adenosyl methionine synthetase%2C S-adenosylmethionine synthetase 1%2C SAM synthase;Note=S-adenosyl-l-methionine synthetase%2C Essential for histone H3K4me3 and DNA methylation%2C Regulation of gene expression related to flowering%2C Regulation of leaf senescence and grain size;Transcript_evidence=AK103157,AK072051;ORF_evidence=Q0DKY4;GO=Biological Process: S-adenosylmethionine biosynthetic process (GO:0006556),Molecular Function: methionine adenosyltransferase activity (GO:0004478),Molecular Function: ATP binding (GO:0005524);InterPro=S-adenosylmethionine synthetase superfamily (IPR022636),S-adenosylmethionine synthetase (IPR002133),S-adenosylmethionine synthetase%2C N-terminal (IPR022628),S-adenosylmethionine synthetase%2C central domain (IPR022629),S-adenosylmethionine synthetase%2C C-terminal (IPR022630),S-adenosylmethionine synthetase%2C conserved site (IPR022631);NIAS_FLcDNA=J033121A17,J013111H09;Manual Curation=September 2%2C 2020;Literature_PMID=24144792,21757254;Oryzabase=11401;TENOR=Os05t0135700-01;Subcellular location=nucleus (GO:0005634),cytoplasm (GO:0005737)
Chr05	irgsp1_rep	five_prime_UTR	2089037	2089143	.	+	.	Parent=Os05t0135700-01
Chr05	irgsp1_rep	five_prime_UTR	2090469	2090478	.	+	.	Parent=Os05t0135700-01
Chr05	irgsp1_rep	CDS	2090479	2091669	.	+	0	Parent=Os05t0135700-01
Chr05	irgsp1_rep	three_prime_UTR	2091670	2091945	.	+	.	Parent=Os05t0135700-01
Chr05	irgsp1_rep	mRNA	2090465	2091950	.	+	.	ID=Os05t0135700-02;Name=Os05t0135700-02;Locus_id=Os05g0135700;Oryzabase Gene Symbol Synonym(s)=OsSAMS1%2C OS-SAMS1%2C OsSAMS%2C SAM%2C SAMS;Oryzabase Gene Name Synonym(s)=S-Adenosyl-l-methionine synthetase 1%2C S-adenosyl methionine synthetase%2C S-adenosylmethionine synthetase 1%2C SAM synthase;Note=S-adenosylmethionine synthetase 1 (EC 2.5.1.6) (Methionine adenosyltransferase 1) (AdoMet synthetase 1).;Transcript_evidence=AK104875 (DDBJ%2C Best hit);ORF_evidence=Q0DKY4 (UniProt);GO=Biological Process: S-adenosylmethionine biosynthetic process (GO:0006556),Molecular Function: methionine adenosyltransferase activity (GO:0004478),Molecular Function: ATP binding (GO:0005524);InterPro=S-adenosylmethionine synthetase (IPR002133),S-adenosylmethionine synthetase%2C N-terminal (IPR022628),S-adenosylmethionine synthetase%2C central domain (IPR022629),S-adenosylmethionine synthetase%2C C-terminal (IPR022630),S-adenosylmethionine synthetase%2C conserved site (IPR022631),S-adenosylmethionine synthetase superfamily (IPR022636);NIAS_FLcDNA=001-044-D12;Oryzabase=11401;Expression=AK104875;TENOR=Os05t0135700-02;KEGG=Os05t0135700-02 (EC:2.5.1.6)
Chr05	irgsp1_rep	five_prime_UTR	2090465	2090478	.	+	.	Parent=Os05t0135700-02
Chr05	irgsp1_rep	CDS	2090479	2091669	.	+	0	Parent=Os05t0135700-02
Chr05	irgsp1_rep	three_prime_UTR	2091670	2091950	.	+	.	Parent=Os05t0135700-02
Chr05	irgsp1_rep	mRNA	2090474	2091669	.	-	.	ID=Os05t0135750-00;Name=Os05t0135750-00;Locus_id=Os05g0135750;Note=Hypothetical protein.;Transcript_evidence=tplb0048c02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0135750-00
Chr05	irgsp1_rep	five_prime_UTR	2091207	2091669	.	-	.	Parent=Os05t0135750-00
Chr05	irgsp1_rep	CDS	2090679	2091206	.	-	0	Parent=Os05t0135750-00
Chr05	irgsp1_rep	three_prime_UTR	2090474	2090678	.	-	.	Parent=Os05t0135750-00
Chr05	irgsp1_rep	mRNA	2096145	2100423	.	+	.	ID=Os05t0135800-01;Name=Os05t0135800-01;Locus_id=Os05g0135800;RAP-DB Gene Symbol Synonym(s)=RLCK178%2C OsPti1a%2C OsRLCK178;RAP-DB Gene Name Synonym(s)=RECEPTOR-LIKE CYTOPLASMIC KINASE 178%2C Pto-interacting protein 1a%2C Receptor-like Cytoplasmic Kinase 178;CGSNL Gene Symbol=RLCK178;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 178;Oryzabase Gene Symbol Synonym(s)=OsPti1a%2C OsRLCK178;Oryzabase Gene Name Synonym(s)=Pto-interacting protein 1a%2C Receptor-like Cytoplasmic Kinase 178;Note=Ser/Thr protein kinase%2C Negative regulator of innate immunity;Transcript_evidence=AK104870;ORF_evidence=Q75L45;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine-threonine/tyrosine-protein kinase catalytic domain (IPR001245),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);Manual Curation=September 10%2C 2014;Literature_PMID=24958714;Oryzabase=18112;TENOR=Os05t0135800-01
Chr05	irgsp1_rep	five_prime_UTR	2096145	2096270	.	+	.	Parent=Os05t0135800-01
Chr05	irgsp1_rep	five_prime_UTR	2098293	2098311	.	+	.	Parent=Os05t0135800-01
Chr05	irgsp1_rep	CDS	2098312	2098396	.	+	0	Parent=Os05t0135800-01
Chr05	irgsp1_rep	CDS	2098500	2098747	.	+	2	Parent=Os05t0135800-01
Chr05	irgsp1_rep	CDS	2098824	2098950	.	+	0	Parent=Os05t0135800-01
Chr05	irgsp1_rep	CDS	2099070	2099343	.	+	2	Parent=Os05t0135800-01
Chr05	irgsp1_rep	CDS	2099425	2099557	.	+	1	Parent=Os05t0135800-01
Chr05	irgsp1_rep	CDS	2099655	2099741	.	+	0	Parent=Os05t0135800-01
Chr05	irgsp1_rep	CDS	2100030	2100161	.	+	0	Parent=Os05t0135800-01
Chr05	irgsp1_rep	three_prime_UTR	2100162	2100423	.	+	.	Parent=Os05t0135800-01
Chr05	irgsp1_rep	mRNA	2100668	2104847	.	-	.	ID=Os05t0135900-01;Name=Os05t0135900-01;Locus_id=Os05g0135900;Note=Spectrin repeat containing protein.;Transcript_evidence=AK105117 (DDBJ%2C Best hit);ORF_evidence=NP_001149106.1 (RefSeq);NIAS_FLcDNA=001-101-A02;Expression=AK105117;TENOR=Os05t0135900-01;KEGG=Os05t0135900-01
Chr05	irgsp1_rep	five_prime_UTR	2104474	2104847	.	-	.	Parent=Os05t0135900-01
Chr05	irgsp1_rep	five_prime_UTR	2103153	2103402	.	-	.	Parent=Os05t0135900-01
Chr05	irgsp1_rep	CDS	2102958	2103152	.	-	0	Parent=Os05t0135900-01
Chr05	irgsp1_rep	CDS	2102771	2102878	.	-	0	Parent=Os05t0135900-01
Chr05	irgsp1_rep	CDS	2101860	2102321	.	-	0	Parent=Os05t0135900-01
Chr05	irgsp1_rep	CDS	2101647	2101748	.	-	0	Parent=Os05t0135900-01
Chr05	irgsp1_rep	CDS	2100954	2101121	.	-	0	Parent=Os05t0135900-01
Chr05	irgsp1_rep	three_prime_UTR	2100668	2100953	.	-	.	Parent=Os05t0135900-01
Chr05	irgsp1_rep	mRNA	2111251	2112146	.	+	.	ID=Os05t0136100-00;Name=Os05t0136100-00;Locus_id=Os05g0136100;Note=Hypothetical conserved gene.;Transcript_evidence=AK333880 (DDBJ);ORF_evidence=NP_001174208.1 (RefSeq);TENOR=Os05t0136100-00;KEGG=Os05t0136100-00
Chr05	irgsp1_rep	five_prime_UTR	2111251	2111252	.	+	.	Parent=Os05t0136100-00
Chr05	irgsp1_rep	CDS	2111253	2112146	.	+	0	Parent=Os05t0136100-00
Chr05	irgsp1_rep	mRNA	2113595	2117110	.	-	.	ID=Os05t0136200-01;Name=Os05t0136200-01;Locus_id=Os05g0136200;CGSNL Gene Symbol=CIPK17;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 17;Oryzabase Gene Symbol Synonym(s)=OsCIPK17;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 17;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK059282 (DDBJ%2C Best hit);ORF_evidence=B3GM02 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),NAF domain (IPR004041),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),NAF/FISL domain (IPR018451),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-025-D05;Oryzabase=7404;TENOR=Os05t0136200-01
Chr05	irgsp1_rep	five_prime_UTR	2117029	2117110	.	-	.	Parent=Os05t0136200-01
Chr05	irgsp1_rep	CDS	2116795	2117028	.	-	0	Parent=Os05t0136200-01
Chr05	irgsp1_rep	CDS	2116047	2116118	.	-	0	Parent=Os05t0136200-01
Chr05	irgsp1_rep	CDS	2115818	2115925	.	-	0	Parent=Os05t0136200-01
Chr05	irgsp1_rep	CDS	2115597	2115677	.	-	0	Parent=Os05t0136200-01
Chr05	irgsp1_rep	CDS	2115460	2115513	.	-	0	Parent=Os05t0136200-01
Chr05	irgsp1_rep	CDS	2115257	2115382	.	-	0	Parent=Os05t0136200-01
Chr05	irgsp1_rep	CDS	2114958	2115167	.	-	0	Parent=Os05t0136200-01
Chr05	irgsp1_rep	CDS	2114731	2114835	.	-	0	Parent=Os05t0136200-01
Chr05	irgsp1_rep	CDS	2114376	2114492	.	-	0	Parent=Os05t0136200-01
Chr05	irgsp1_rep	CDS	2114204	2114266	.	-	0	Parent=Os05t0136200-01
Chr05	irgsp1_rep	CDS	2114035	2114109	.	-	0	Parent=Os05t0136200-01
Chr05	irgsp1_rep	CDS	2113819	2113938	.	-	0	Parent=Os05t0136200-01
Chr05	irgsp1_rep	three_prime_UTR	2113595	2113818	.	-	.	Parent=Os05t0136200-01
Chr05	irgsp1_rep	mRNA	2113598	2117065	.	-	.	ID=Os05t0136200-02;Name=Os05t0136200-02;Locus_id=Os05g0136200;CGSNL Gene Symbol=CIPK17;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 17;Oryzabase Gene Symbol Synonym(s)=OsCIPK17;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 17;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK100498 (DDBJ%2C Best hit);ORF_evidence=B3GM02 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),NAF domain (IPR004041),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),NAF/FISL domain (IPR018451),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023099E10;Oryzabase=7404;TENOR=Os05t0136200-02
Chr05	irgsp1_rep	five_prime_UTR	2117029	2117065	.	-	.	Parent=Os05t0136200-02
Chr05	irgsp1_rep	CDS	2116795	2117028	.	-	0	Parent=Os05t0136200-02
Chr05	irgsp1_rep	CDS	2116047	2116118	.	-	0	Parent=Os05t0136200-02
Chr05	irgsp1_rep	CDS	2115818	2115925	.	-	0	Parent=Os05t0136200-02
Chr05	irgsp1_rep	CDS	2115597	2115677	.	-	0	Parent=Os05t0136200-02
Chr05	irgsp1_rep	CDS	2115460	2115513	.	-	0	Parent=Os05t0136200-02
Chr05	irgsp1_rep	CDS	2115257	2115382	.	-	0	Parent=Os05t0136200-02
Chr05	irgsp1_rep	CDS	2114958	2115167	.	-	0	Parent=Os05t0136200-02
Chr05	irgsp1_rep	CDS	2114731	2114835	.	-	0	Parent=Os05t0136200-02
Chr05	irgsp1_rep	CDS	2114376	2114492	.	-	0	Parent=Os05t0136200-02
Chr05	irgsp1_rep	CDS	2114204	2114266	.	-	0	Parent=Os05t0136200-02
Chr05	irgsp1_rep	CDS	2114035	2114109	.	-	0	Parent=Os05t0136200-02
Chr05	irgsp1_rep	CDS	2113819	2113938	.	-	0	Parent=Os05t0136200-02
Chr05	irgsp1_rep	three_prime_UTR	2113598	2113818	.	-	.	Parent=Os05t0136200-02
Chr05	irgsp1_rep	mRNA	2124240	2127599	.	+	.	ID=Os05t0136400-01;Name=Os05t0136400-01;Locus_id=Os05g0136400;Note=Conserved hypothetical protein.;Transcript_evidence=AK101387 (DDBJ%2C Best hit);ORF_evidence=B9FMB7 (UniProt);NIAS_FLcDNA=J033036G05;Expression=AK101387;TENOR=Os05t0136400-01;KEGG=Os05t0136400-01
Chr05	irgsp1_rep	five_prime_UTR	2124240	2124348	.	+	.	Parent=Os05t0136400-01
Chr05	irgsp1_rep	CDS	2124349	2124720	.	+	0	Parent=Os05t0136400-01
Chr05	irgsp1_rep	CDS	2124824	2124847	.	+	0	Parent=Os05t0136400-01
Chr05	irgsp1_rep	three_prime_UTR	2124848	2124977	.	+	.	Parent=Os05t0136400-01
Chr05	irgsp1_rep	three_prime_UTR	2125647	2125877	.	+	.	Parent=Os05t0136400-01
Chr05	irgsp1_rep	three_prime_UTR	2126649	2126741	.	+	.	Parent=Os05t0136400-01
Chr05	irgsp1_rep	three_prime_UTR	2127066	2127175	.	+	.	Parent=Os05t0136400-01
Chr05	irgsp1_rep	three_prime_UTR	2127286	2127599	.	+	.	Parent=Os05t0136400-01
Chr05	irgsp1_rep	mRNA	2143794	2144660	.	-	.	ID=Os05t0136800-01;Name=Os05t0136800-01;Locus_id=Os05g0136800;Note=Hypothetical protein.;Transcript_evidence=AK106972 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-119-G06;Expression=AK106972;TENOR=Os05t0136800-01;KEGG=Os05t0136800-01
Chr05	irgsp1_rep	five_prime_UTR	2144416	2144660	.	-	.	Parent=Os05t0136800-01
Chr05	irgsp1_rep	CDS	2143972	2144415	.	-	0	Parent=Os05t0136800-01
Chr05	irgsp1_rep	three_prime_UTR	2143794	2143971	.	-	.	Parent=Os05t0136800-01
Chr05	irgsp1_rep	mRNA	2143896	2150179	.	+	.	ID=Os05t0136900-01;Name=Os05t0136900-01;Locus_id=Os05g0136900;CGSNL Gene Symbol=AT3;CGSNL Gene Name=ACYLTRANSFERASE 3;Oryzabase Gene Symbol Synonym(s)=OsAT3%2C OsAt3;Oryzabase Gene Name Synonym(s)=acyltransferase 3;Note=Transferase family protein.;Transcript_evidence=AK069868 (DDBJ%2C Best hit);ORF_evidence=B6TZX2 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J023039O14;Oryzabase=11735;Expression=AK069868;TENOR=Os05t0136900-01;KEGG=Os05t0136900-01
Chr05	irgsp1_rep	five_prime_UTR	2143896	2143993	.	+	.	Parent=Os05t0136900-01
Chr05	irgsp1_rep	CDS	2143994	2144422	.	+	0	Parent=Os05t0136900-01
Chr05	irgsp1_rep	CDS	2148979	2149860	.	+	0	Parent=Os05t0136900-01
Chr05	irgsp1_rep	three_prime_UTR	2149861	2150179	.	+	.	Parent=Os05t0136900-01
Chr05	irgsp1_rep	mRNA	2165045	2166794	.	-	.	ID=Os05t0137000-01;Name=Os05t0137000-01;Locus_id=Os05g0137000;Note=Chorismate synthase domain containing protein.;Transcript_evidence=AK107339 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-126-G01;Expression=AK107339;TENOR=Os05t0137000-01;KEGG=Os05t0137000-01
Chr05	irgsp1_rep	five_prime_UTR	2165952	2166794	.	-	.	Parent=Os05t0137000-01
Chr05	irgsp1_rep	CDS	2165346	2165951	.	-	0	Parent=Os05t0137000-01
Chr05	irgsp1_rep	three_prime_UTR	2165045	2165345	.	-	.	Parent=Os05t0137000-01
Chr05	irgsp1_rep	mRNA	2165243	2166893	.	+	.	ID=Os05t0137100-01;Name=Os05t0137100-01;Locus_id=Os05g0137100;Note=Similar to MDR-like ABC transporter.;Transcript_evidence=AK110841 (DDBJ%2C Best hit);ORF_evidence=Q8GU69 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C integral membrane type 1 (IPR017940);NIAS_FLcDNA=002-172-B06;TENOR=Os05t0137100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	2165243	2165474	.	+	.	Parent=Os05t0137100-01
Chr05	irgsp1_rep	CDS	2165475	2165868	.	+	0	Parent=Os05t0137100-01
Chr05	irgsp1_rep	CDS	2165955	2166487	.	+	2	Parent=Os05t0137100-01
Chr05	irgsp1_rep	three_prime_UTR	2166488	2166893	.	+	.	Parent=Os05t0137100-01
Chr05	irgsp1_rep	mRNA	2169601	2171491	.	+	.	ID=Os05t0137200-01;Name=Os05t0137200-01;Locus_id=Os05g0137200;CGSNL Gene Symbol=MDR3;CGSNL Gene Name=MULTIDRUG RESISTANCE 3;Oryzabase Gene Symbol Synonym(s)=OsABCB17%2C ABCB17%2C OsPGP17%2C OsMDR3%2C OsABCB17_1;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCB subgroup member 17%2C P-Glycoprotein 17%2C multidrug resistance 3;Note=Similar to P-glycoprotein ABCB5.;Transcript_evidence=AK061521 (DDBJ%2C Best hit);ORF_evidence=Q8GU69 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);NIAS_FLcDNA=006-310-B05;Oryzabase=11936;Expression=AK061521;TENOR=Os05t0137200-01;KEGG=Os05t0137200-01
Chr05	irgsp1_rep	five_prime_UTR	2169601	2169601	.	+	.	Parent=Os05t0137200-01
Chr05	irgsp1_rep	CDS	2169602	2169865	.	+	0	Parent=Os05t0137200-01
Chr05	irgsp1_rep	CDS	2170109	2170372	.	+	0	Parent=Os05t0137200-01
Chr05	irgsp1_rep	CDS	2170461	2170754	.	+	0	Parent=Os05t0137200-01
Chr05	irgsp1_rep	CDS	2170853	2171212	.	+	0	Parent=Os05t0137200-01
Chr05	irgsp1_rep	three_prime_UTR	2171213	2171491	.	+	.	Parent=Os05t0137200-01
Chr05	irgsp1_rep	mRNA	2169794	2171491	.	+	.	ID=Os05t0137200-02;Name=Os05t0137200-02;Locus_id=Os05g0137200;CGSNL Gene Symbol=MDR3;CGSNL Gene Name=MULTIDRUG RESISTANCE 3;Oryzabase Gene Symbol Synonym(s)=OsABCB17%2C ABCB17%2C OsPGP17%2C OsMDR3%2C OsABCB17_1;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCB subgroup member 17%2C P-Glycoprotein 17%2C multidrug resistance 3;Note=Similar to MDR-like ABC transporter.;Transcript_evidence=AK061417 (DDBJ%2C Best hit);ORF_evidence=Q8GU69 (UniProt);NIAS_FLcDNA=006-306-E07;Oryzabase=11936;Expression=AK061417;TENOR=Os05t0137200-02;KEGG=Os05t0137200-02
Chr05	irgsp1_rep	CDS	2169794	2169865	.	+	0	Parent=Os05t0137200-02
Chr05	irgsp1_rep	CDS	2170109	2170326	.	+	0	Parent=Os05t0137200-02
Chr05	irgsp1_rep	CDS	2170633	2170642	.	+	1	Parent=Os05t0137200-02
Chr05	irgsp1_rep	three_prime_UTR	2170643	2170754	.	+	.	Parent=Os05t0137200-02
Chr05	irgsp1_rep	three_prime_UTR	2170853	2171491	.	+	.	Parent=Os05t0137200-02
Chr05	irgsp1_rep	mRNA	2170108	2171491	.	+	.	ID=Os05t0137200-03;Name=Os05t0137200-03;Locus_id=Os05g0137200;CGSNL Gene Symbol=MDR3;CGSNL Gene Name=MULTIDRUG RESISTANCE 3;Oryzabase Gene Symbol Synonym(s)=OsABCB17%2C ABCB17%2C OsPGP17%2C OsMDR3%2C OsABCB17_1;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCB subgroup member 17%2C P-Glycoprotein 17%2C multidrug resistance 3;Note=Similar to MDR-like ABC transporter.;Transcript_evidence=AK059748 (DDBJ%2C Best hit);ORF_evidence=Q8GU69 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=006-203-A07;Oryzabase=11936;Expression=AK059748;TENOR=Os05t0137200-03;KEGG=Os05t0137200-03
Chr05	irgsp1_rep	five_prime_UTR	2170108	2170108	.	+	.	Parent=Os05t0137200-03
Chr05	irgsp1_rep	CDS	2170109	2170372	.	+	0	Parent=Os05t0137200-03
Chr05	irgsp1_rep	CDS	2170461	2170754	.	+	0	Parent=Os05t0137200-03
Chr05	irgsp1_rep	CDS	2170853	2171212	.	+	0	Parent=Os05t0137200-03
Chr05	irgsp1_rep	three_prime_UTR	2171213	2171491	.	+	.	Parent=Os05t0137200-03
Chr05	irgsp1_rep	mRNA	2171396	2171510	.	+	.	ID=Os05t0137200-04;Name=Os05t0137200-04;Locus_id=Os05g0137200;CGSNL Gene Symbol=MDR3;CGSNL Gene Name=MULTIDRUG RESISTANCE 3;Oryzabase Gene Symbol Synonym(s)=OsABCB17%2C ABCB17%2C OsPGP17%2C OsMDR3%2C OsABCB17_1;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCB subgroup member 17%2C P-Glycoprotein 17%2C multidrug resistance 3;Note=Non-protein coding transcript.;Transcript_evidence=AK060259 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-004-F04;Oryzabase=11936;TENOR=Os05t0137200-04
Chr05	irgsp1_rep	exon	2171396	2171510	.	+	.	Parent=Os05t0137200-04
Chr05	irgsp1_rep	mRNA	2172205	2174188	.	+	.	ID=Os05t0137300-01;Name=Os05t0137300-01;Locus_id=Os05g0137300;Note=Thioredoxin fold domain containing protein.;Transcript_evidence=AK067812 (DDBJ%2C Best hit);ORF_evidence=A2Y067 (UniProt);InterPro=Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=J013114P12;Expression=AK067812;TENOR=Os05t0137300-01;KEGG=Os05t0137300-01
Chr05	irgsp1_rep	five_prime_UTR	2172205	2172315	.	+	.	Parent=Os05t0137300-01
Chr05	irgsp1_rep	CDS	2172316	2172573	.	+	0	Parent=Os05t0137300-01
Chr05	irgsp1_rep	CDS	2173064	2174035	.	+	0	Parent=Os05t0137300-01
Chr05	irgsp1_rep	three_prime_UTR	2174036	2174188	.	+	.	Parent=Os05t0137300-01
Chr05	irgsp1_rep	mRNA	2174913	2179088	.	+	.	ID=Os05t0137400-01;Name=Os05t0137400-01;Locus_id=Os05g0137400;Oryzabase Gene Symbol Synonym(s)=OsAP1;Oryzabase Gene Name Synonym(s)=Aspartic acid protease 1%2C aspartic proteinase;Note=Similar to Aspartic protease precursor.;Transcript_evidence=AK065206 (DDBJ%2C Best hit);ORF_evidence=P42211 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: lipid metabolic process (GO:0006629),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Saposin-like type B%2C 1 (IPR007856),Saposin-like type B%2C 2 (IPR008138),Saposin B (IPR008139),Peptidase aspartic%2C catalytic (IPR009007),Saposin-like (IPR011001),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J013002F13;Oryzabase=11563;Expression=AK065206;TENOR=Os05t0137400-01;KEGG=Os05t0137400-01 (EC:3.4.23.40)
Chr05	irgsp1_rep	five_prime_UTR	2174913	2175038	.	+	.	Parent=Os05t0137400-01
Chr05	irgsp1_rep	five_prime_UTR	2175631	2175654	.	+	.	Parent=Os05t0137400-01
Chr05	irgsp1_rep	CDS	2175655	2175987	.	+	0	Parent=Os05t0137400-01
Chr05	irgsp1_rep	CDS	2176104	2176164	.	+	0	Parent=Os05t0137400-01
Chr05	irgsp1_rep	CDS	2176274	2176368	.	+	2	Parent=Os05t0137400-01
Chr05	irgsp1_rep	CDS	2176470	2176582	.	+	0	Parent=Os05t0137400-01
Chr05	irgsp1_rep	CDS	2176676	2176949	.	+	1	Parent=Os05t0137400-01
Chr05	irgsp1_rep	CDS	2177321	2177434	.	+	0	Parent=Os05t0137400-01
Chr05	irgsp1_rep	CDS	2177567	2177631	.	+	0	Parent=Os05t0137400-01
Chr05	irgsp1_rep	CDS	2177723	2177864	.	+	1	Parent=Os05t0137400-01
Chr05	irgsp1_rep	CDS	2177945	2178064	.	+	0	Parent=Os05t0137400-01
Chr05	irgsp1_rep	CDS	2178551	2178639	.	+	0	Parent=Os05t0137400-01
Chr05	irgsp1_rep	CDS	2178747	2178831	.	+	1	Parent=Os05t0137400-01
Chr05	irgsp1_rep	three_prime_UTR	2178832	2179088	.	+	.	Parent=Os05t0137400-01
Chr05	irgsp1_rep	mRNA	2179520	2184940	.	-	.	ID=Os05t0137500-01;Name=Os05t0137500-01;Locus_id=Os05g0137500;RAP-DB Gene Symbol Synonym(s)=OsWRKY5;RAP-DB Gene Name Synonym(s)=WRKY GENE 5;CGSNL Gene Symbol=WRKY5;CGSNL Gene Name=WRKY GENE 5;Oryzabase Gene Symbol Synonym(s)=OsWRKY5;Oryzabase Gene Name Synonym(s)=Rice WRKY gene5;Note=WRKY transcription factor%2C Positive regulator of leaf senescence;Transcript_evidence=Inferred from literature;ORF_evidence=Q6IES6;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA-binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=WRKY domain superfamily (IPR036576),WRKY domain (IPR003657);Manual Curation=September 13%2C 2019;Literature_PMID=31505875,Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6564;TENOR=Os05t0137500-00;Subcellular location=nucleus (GO:0005634)
Chr05	irgsp1_rep	five_prime_UTR	2184899	2184940	.	-	.	Parent=Os05t0137500-01
Chr05	irgsp1_rep	CDS	2184713	2184898	.	-	0	Parent=Os05t0137500-01
Chr05	irgsp1_rep	CDS	2184141	2184302	.	-	0	Parent=Os05t0137500-01
Chr05	irgsp1_rep	CDS	2182293	2182601	.	-	0	Parent=Os05t0137500-01
Chr05	irgsp1_rep	CDS	2181855	2181968	.	-	0	Parent=Os05t0137500-01
Chr05	irgsp1_rep	CDS	2179520	2180173	.	-	0	Parent=Os05t0137500-01
Chr05	irgsp1_rep	mRNA	2194869	2196386	.	+	.	ID=Os05t0137600-01;Name=Os05t0137600-01;Locus_id=Os05g0137600;Note=Conserved hypothetical protein.;Transcript_evidence=AK099427 (DDBJ%2C Best hit);ORF_evidence=B9FGX8 (UniProt);NIAS_FLcDNA=J013011J07;Expression=AK099427;TENOR=Os05t0137600-01;KEGG=Os05t0137600-01
Chr05	irgsp1_rep	five_prime_UTR	2194869	2194872	.	+	.	Parent=Os05t0137600-01
Chr05	irgsp1_rep	CDS	2194873	2195166	.	+	0	Parent=Os05t0137600-01
Chr05	irgsp1_rep	CDS	2195717	2195767	.	+	0	Parent=Os05t0137600-01
Chr05	irgsp1_rep	CDS	2195853	2195986	.	+	0	Parent=Os05t0137600-01
Chr05	irgsp1_rep	CDS	2196096	2196183	.	+	1	Parent=Os05t0137600-01
Chr05	irgsp1_rep	three_prime_UTR	2196184	2196386	.	+	.	Parent=Os05t0137600-01
Chr05	irgsp1_rep	mRNA	2195818	2197979	.	-	.	ID=Os05t0137700-00;Name=Os05t0137700-00;Locus_id=Os05g0137700;Note=Similar to thioesterase family protein.;Transcript_evidence=BT065997 (DDBJ);ORF_evidence=NP_175266.1 (RefSeq);InterPro=Phenylacetic acid degradation-related protein (IPR003736),Thioesterase superfamily (IPR006683);TENOR=Os05t0137700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	2197470	2197979	.	-	0	Parent=Os05t0137700-00
Chr05	irgsp1_rep	CDS	2196445	2196600	.	-	0	Parent=Os05t0137700-00
Chr05	irgsp1_rep	three_prime_UTR	2196281	2196444	.	-	.	Parent=Os05t0137700-00
Chr05	irgsp1_rep	three_prime_UTR	2195818	2196102	.	-	.	Parent=Os05t0137700-00
Chr05	irgsp1_rep	mRNA	2205392	2207098	.	-	.	ID=Os05t0137800-01;Name=Os05t0137800-01;Locus_id=Os05g0137800;Note=Hypothetical conserved gene.;Transcript_evidence=AK062730 (DDBJ%2C Best hit);ORF_evidence=B9FMC1 (UniProt);NIAS_FLcDNA=001-106-E04;Expression=AK062730;TENOR=Os05t0137800-01;KEGG=Os05t0137800-01
Chr05	irgsp1_rep	five_prime_UTR	2206925	2207098	.	-	.	Parent=Os05t0137800-01
Chr05	irgsp1_rep	CDS	2206831	2206924	.	-	0	Parent=Os05t0137800-01
Chr05	irgsp1_rep	CDS	2205646	2205728	.	-	2	Parent=Os05t0137800-01
Chr05	irgsp1_rep	three_prime_UTR	2205392	2205645	.	-	.	Parent=Os05t0137800-01
Chr05	irgsp1_rep	mRNA	2212891	2213608	.	+	.	ID=Os05t0138000-01;Name=Os05t0138000-01;Locus_id=Os05g0138000;Note=Conserved hypothetical protein.;Transcript_evidence=AK120814 (DDBJ%2C Best hit);ORF_evidence=B9FMC2 (UniProt);NIAS_FLcDNA=J023014M12;TENOR=Os05t0138000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	2212891	2213057	.	+	.	Parent=Os05t0138000-01
Chr05	irgsp1_rep	CDS	2213058	2213567	.	+	0	Parent=Os05t0138000-01
Chr05	irgsp1_rep	three_prime_UTR	2213568	2213608	.	+	.	Parent=Os05t0138000-01
Chr05	irgsp1_rep	mRNA	2217558	2218582	.	+	.	ID=Os05t0138200-01;Name=Os05t0138200-01;Locus_id=Os05g0138200;Note=Similar to Chitinase (Class II) (EC 3.2.1.14).;Transcript_evidence=AK101475 (DDBJ%2C Best hit),AK110261 (DDBJ%2C Best hit);ORF_evidence=Q5NB11 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: chitin catabolic process (GO:0006032),Biological Process: cell wall macromolecule catabolic process (GO:0016998),Molecular Function: chitinase activity (GO:0004568);InterPro=Glycoside hydrolase%2C family 19%2C catalytic (IPR000726),Glycoside hydrolase%2C family 19 (IPR016283),Lysozyme-like domain (IPR023346);NIAS_FLcDNA=J033040N15,002-163-B04;Expression=AK101475;TENOR=Os05t0138200-01;KEGG=Os05t0138200-01 (EC:3.2.1.14)
Chr05	irgsp1_rep	five_prime_UTR	2217558	2217579	.	+	.	Parent=Os05t0138200-01
Chr05	irgsp1_rep	CDS	2217580	2218467	.	+	0	Parent=Os05t0138200-01
Chr05	irgsp1_rep	three_prime_UTR	2218468	2218582	.	+	.	Parent=Os05t0138200-01
Chr05	irgsp1_rep	mRNA	2219581	2220618	.	-	.	ID=Os05t0138300-01;Name=Os05t0138300-01;Locus_id=Os05g0138300;Oryzabase Gene Symbol Synonym(s)=OsLti6b%2C Lti6b%2C OsLTI6B%2C OsRCI2-6;Oryzabase Gene Name Synonym(s)=low temperature-induced low molecular weight integral membrane protein LTI6b%2C low temperature induced gene 6b%2C low temperature and salt responsive protein LTI6B%2C rare cold-inducible 2-6;Note=Similar to ICT protein (Fragment).;Transcript_evidence=AK099873 (DDBJ%2C Best hit),AK070577 (DDBJ%2C Best hit);ORF_evidence=Q9SXZ4 (UniProt);NIAS_FLcDNA=J013111G21,J023057O07;Oryzabase=11370;Expression=AK099873;TENOR=Os05t0138300-01;KEGG=Os05t0138300-01
Chr05	irgsp1_rep	five_prime_UTR	2220030	2220618	.	-	.	Parent=Os05t0138300-01
Chr05	irgsp1_rep	CDS	2219901	2220029	.	-	0	Parent=Os05t0138300-01
Chr05	irgsp1_rep	three_prime_UTR	2219581	2219900	.	-	.	Parent=Os05t0138300-01
Chr05	irgsp1_rep	mRNA	2219749	2220610	.	-	.	ID=Os05t0138300-03;Name=Os05t0138300-03;Locus_id=Os05g0138300;Oryzabase Gene Symbol Synonym(s)=OsLti6b%2C Lti6b%2C OsLTI6B%2C OsRCI2-6;Oryzabase Gene Name Synonym(s)=low temperature-induced low molecular weight integral membrane protein LTI6b%2C low temperature induced gene 6b%2C low temperature and salt responsive protein LTI6B%2C rare cold-inducible 2-6;Note=Similar to ICT protein (Fragment).;Transcript_evidence=AK119249 (DDBJ%2C Best hit);ORF_evidence=Q9SXZ4 (UniProt);NIAS_FLcDNA=001-121-G07;Oryzabase=11370;TENOR=Os05t0138300-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	2220379	2220610	.	-	.	Parent=Os05t0138300-03
Chr05	irgsp1_rep	five_prime_UTR	2220262	2220262	.	-	.	Parent=Os05t0138300-03
Chr05	irgsp1_rep	CDS	2220140	2220261	.	-	0	Parent=Os05t0138300-03
Chr05	irgsp1_rep	CDS	2219901	2220015	.	-	1	Parent=Os05t0138300-03
Chr05	irgsp1_rep	three_prime_UTR	2219749	2219900	.	-	.	Parent=Os05t0138300-03
Chr05	irgsp1_rep	mRNA	2246835	2248876	.	+	.	ID=Os05t0139100-01;Name=Os05t0139100-01;Locus_id=Os05g0139100;RAP-DB Gene Symbol Synonym(s)=APG;RAP-DB Gene Name Synonym(s)=ANTAGONIST OF PGL1;CGSNL Gene Symbol=PIL16;Oryzabase Gene Symbol Synonym(s)=APG%2C OsPIL16%2C OsbHLH106;Oryzabase Gene Name Synonym(s)=ANTAGONIST OF PGL1%2C PHYTOCHROME INTERACTING FACTOR-LIKE 16%2C basic helix-loop-helix protein 106;Note=Typical DNA-binding bHLH protein%2C Negative regulation of grain length and weight;Transcript_evidence=AK287958;ORF_evidence=Q6AT90;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Helix-loop-helix DNA-binding domain superfamily (IPR036638),Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);NIAS_FLcDNA=J075053F01;Manual Curation=January 16%2C 2019;Literature_PMID=22363621;Oryzabase=14313;TENOR=Os05t0139100-01;KEGG=Os05t0139100-01;Subcellular location=nucleus (GO:0005634)
Chr05	irgsp1_rep	five_prime_UTR	2246835	2246897	.	+	.	Parent=Os05t0139100-01
Chr05	irgsp1_rep	CDS	2246898	2247833	.	+	0	Parent=Os05t0139100-01
Chr05	irgsp1_rep	CDS	2247916	2248014	.	+	0	Parent=Os05t0139100-01
Chr05	irgsp1_rep	CDS	2248105	2248170	.	+	0	Parent=Os05t0139100-01
Chr05	irgsp1_rep	CDS	2248248	2248664	.	+	0	Parent=Os05t0139100-01
Chr05	irgsp1_rep	three_prime_UTR	2248665	2248876	.	+	.	Parent=Os05t0139100-01
Chr05	irgsp1_rep	mRNA	2251313	2253040	.	-	.	ID=Os05t0139200-01;Name=Os05t0139200-01;Locus_id=Os05g0139200;Oryzabase Gene Symbol Synonym(s)=OsFbox245%2C Os_F0037;Oryzabase Gene Name Synonym(s)=F-box protein 245;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK108058 (DDBJ%2C Best hit);ORF_evidence=B9FMC8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Quinoprotein amine dehydrogenase%2C beta chain-like (IPR011044),Kelch-type beta propeller (IPR015915),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-138-A07;Oryzabase=17030;Expression=AK108058;TENOR=Os05t0139200-01;KEGG=Os05t0139200-01
Chr05	irgsp1_rep	five_prime_UTR	2252979	2253040	.	-	.	Parent=Os05t0139200-01
Chr05	irgsp1_rep	five_prime_UTR	2252861	2252877	.	-	.	Parent=Os05t0139200-01
Chr05	irgsp1_rep	CDS	2251661	2252860	.	-	0	Parent=Os05t0139200-01
Chr05	irgsp1_rep	three_prime_UTR	2251313	2251660	.	-	.	Parent=Os05t0139200-01
Chr05	irgsp1_rep	mRNA	2258505	2259688	.	-	.	ID=Os05t0139300-00;Name=Os05t0139300-00;Locus_id=Os05g0139300;Oryzabase Gene Symbol Synonym(s)=OsFbox246%2C Os_F0004;Oryzabase Gene Name Synonym(s)=F-box protein 246;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001054595.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17031;TENOR=Os05t0139300-00
Chr05	irgsp1_rep	CDS	2259039	2259688	.	-	0	Parent=Os05t0139300-00
Chr05	irgsp1_rep	CDS	2258505	2258892	.	-	1	Parent=Os05t0139300-00
Chr05	irgsp1_rep	mRNA	2311217	2321098	.	-	.	ID=Os05t0140000-01;Name=Os05t0140000-01;Locus_id=Os05g0140000;Note=Hypothetical protein.;Transcript_evidence=AK111588 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013088F24;Expression=AK111588;TENOR=Os05t0140000-01;KEGG=Os05t0140000-01
Chr05	irgsp1_rep	five_prime_UTR	2320955	2321098	.	-	.	Parent=Os05t0140000-01
Chr05	irgsp1_rep	five_prime_UTR	2316673	2316741	.	-	.	Parent=Os05t0140000-01
Chr05	irgsp1_rep	CDS	2316648	2316672	.	-	0	Parent=Os05t0140000-01
Chr05	irgsp1_rep	CDS	2312183	2312598	.	-	2	Parent=Os05t0140000-01
Chr05	irgsp1_rep	three_prime_UTR	2311544	2312182	.	-	.	Parent=Os05t0140000-01
Chr05	irgsp1_rep	three_prime_UTR	2311217	2311465	.	-	.	Parent=Os05t0140000-01
Chr05	irgsp1_rep	mRNA	2311396	2315429	.	+	.	ID=Os05t0140100-01;Name=Os05t0140100-01;Locus_id=Os05g0140100;RAP-DB Gene Symbol Synonym(s)=OsMYB2P-1%2C R2R3-MYB%2C OsMYB55/61-L;RAP-DB Gene Name Synonym(s)=MYB2 phosphate-responsive gene 1%2C MYB transcription factor;Oryzabase Gene Symbol Synonym(s)=R2R3-MYB%2C OsMYB55/61-L%2C MYB55/61-L%2C OsMYB55%2C OsMYB61-L%2C MYB55%2C MYB61-L%2C OsMYB61L%2C MYB61L%2C OsMYB61b%2C MYB61b;Oryzabase Gene Name Synonym(s)=MYB transcription factor 55/61L;Note=R2R3 MYB transcription factor%2C Regulation of phosphate-starvation responses and root architecture;Transcript_evidence=AK111821;ORF_evidence=Q688D6;GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: Chromatin binding (GO:0003682);InterPro=Protein of unknown function DUF3651%2C TMEM131 (IPR022113),Homeodomain-like (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930);NIAS_FLcDNA=J023018J24;Manual Curation=August 27%2C 2014;Literature_PMID=22395576;Oryzabase=16185;TENOR=Os05t0140100-01;KEGG=Os05t0140100-01
Chr05	irgsp1_rep	five_prime_UTR	2311396	2311510	.	+	.	Parent=Os05t0140100-01
Chr05	irgsp1_rep	five_prime_UTR	2311594	2313402	.	+	.	Parent=Os05t0140100-01
Chr05	irgsp1_rep	CDS	2313403	2313535	.	+	0	Parent=Os05t0140100-01
Chr05	irgsp1_rep	CDS	2313667	2313796	.	+	2	Parent=Os05t0140100-01
Chr05	irgsp1_rep	CDS	2313902	2314922	.	+	1	Parent=Os05t0140100-01
Chr05	irgsp1_rep	three_prime_UTR	2314923	2315429	.	+	.	Parent=Os05t0140100-01
Chr05	irgsp1_rep	mRNA	2313002	2315442	.	+	.	ID=Os05t0140100-02;Name=Os05t0140100-02;Locus_id=Os05g0140100;Oryzabase Gene Symbol Synonym(s)=R2R3-MYB%2C OsMYB55/61-L%2C MYB55/61-L%2C OsMYB55%2C OsMYB61-L%2C MYB55%2C MYB61-L%2C OsMYB61L%2C MYB61L%2C OsMYB61b%2C MYB61b;Oryzabase Gene Name Synonym(s)=MYB transcription factor 55/61L;Note=Myb transcription factor domain containing protein.;Transcript_evidence=AK099636 (DDBJ%2C Best hit);ORF_evidence=D7F2A8 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930),Protein of unknown function DUF3651%2C TMEM131 (IPR022113);NIAS_FLcDNA=J013059L07;Oryzabase=16185;TENOR=Os05t0140100-02;KEGG=Os05t0140100-02
Chr05	irgsp1_rep	five_prime_UTR	2313002	2313402	.	+	.	Parent=Os05t0140100-02
Chr05	irgsp1_rep	CDS	2313403	2313535	.	+	0	Parent=Os05t0140100-02
Chr05	irgsp1_rep	CDS	2313667	2313796	.	+	2	Parent=Os05t0140100-02
Chr05	irgsp1_rep	CDS	2313902	2314922	.	+	1	Parent=Os05t0140100-02
Chr05	irgsp1_rep	three_prime_UTR	2314923	2315442	.	+	.	Parent=Os05t0140100-02
Chr05	irgsp1_rep	mRNA	2313313	2315442	.	+	.	ID=Os05t0140100-03;Name=Os05t0140100-03;Locus_id=Os05g0140100;Oryzabase Gene Symbol Synonym(s)=R2R3-MYB%2C OsMYB55/61-L%2C MYB55/61-L%2C OsMYB55%2C OsMYB61-L%2C MYB55%2C MYB61-L%2C OsMYB61L%2C MYB61L%2C OsMYB61b%2C MYB61b;Oryzabase Gene Name Synonym(s)=MYB transcription factor 55/61L;Note=Myb transcription factor domain containing protein.;Transcript_evidence=AK104345 (DDBJ%2C Best hit);ORF_evidence=D7F2A8 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930),Protein of unknown function DUF3651%2C TMEM131 (IPR022113);NIAS_FLcDNA=001-034-D09;Oryzabase=16185;TENOR=Os05t0140100-03;KEGG=Os05t0140100-03
Chr05	irgsp1_rep	five_prime_UTR	2313313	2313402	.	+	.	Parent=Os05t0140100-03
Chr05	irgsp1_rep	CDS	2313403	2313535	.	+	0	Parent=Os05t0140100-03
Chr05	irgsp1_rep	CDS	2313667	2313796	.	+	2	Parent=Os05t0140100-03
Chr05	irgsp1_rep	CDS	2313902	2314922	.	+	1	Parent=Os05t0140100-03
Chr05	irgsp1_rep	three_prime_UTR	2314923	2315442	.	+	.	Parent=Os05t0140100-03
Chr05	irgsp1_rep	mRNA	2325838	2326680	.	+	.	ID=Os05t0140300-00;Name=Os05t0140300-00;Locus_id=Os05g0140300;Note=Conserved hypothetical protein.;Transcript_evidence=AK374463 (DDBJ);ORF_evidence=NP_001174211.1 (RefSeq);TENOR=Os05t0140300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	2325838	2326680	.	+	0	Parent=Os05t0140300-00
Chr05	irgsp1_rep	mRNA	2326313	2331324	.	-	.	ID=Os05t0140334-00;Name=Os05t0140334-00;Locus_id=Os05g0140334;Note=Hypothetical protein.;Transcript_evidence=BT086074 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0140334-00
Chr05	irgsp1_rep	CDS	2331231	2331324	.	-	0	Parent=Os05t0140334-00
Chr05	irgsp1_rep	CDS	2326313	2326638	.	-	2	Parent=Os05t0140334-00
Chr05	irgsp1_rep	mRNA	2331061	2334123	.	+	.	ID=Os05t0140500-01;Name=Os05t0140500-01;Locus_id=Os05g0140500;Oryzabase Gene Symbol Synonym(s)=OsY14a%2C Y14a;Note=RNA binding motif protein 8 family protein.;Transcript_evidence=AK243594 (DDBJ%2C Best hit);ORF_evidence=B7FAL5;GO=Biological Process: RNA processing (GO:0006396),Cellular Component: nucleus (GO:0005634),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723);InterPro=RNA recognition motif domain (IPR000504),RNA-binding motif protein 8 (IPR008111),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J100084C05;Manual Curation=August 5%2C 2014;Oryzabase=18333;TENOR=Os05t0140500-01;KEGG=Os05t0140500-01
Chr05	irgsp1_rep	five_prime_UTR	2331061	2331146	.	+	.	Parent=Os05t0140500-01
Chr05	irgsp1_rep	CDS	2331147	2331435	.	+	0	Parent=Os05t0140500-01
Chr05	irgsp1_rep	CDS	2332625	2332761	.	+	2	Parent=Os05t0140500-01
Chr05	irgsp1_rep	CDS	2333058	2333203	.	+	0	Parent=Os05t0140500-01
Chr05	irgsp1_rep	CDS	2333859	2333901	.	+	1	Parent=Os05t0140500-01
Chr05	irgsp1_rep	three_prime_UTR	2333902	2334123	.	+	.	Parent=Os05t0140500-01
Chr05	irgsp1_rep	mRNA	2331147	2333901	.	+	.	ID=Os05t0140500-02;Name=Os05t0140500-02;Locus_id=Os05g0140500;RAP-DB Gene Symbol Synonym(s)=OsY14a%2C Y14a%2C Tsunagi%2C RBM8;Oryzabase Gene Symbol Synonym(s)=OsY14a%2C Y14a;Note=Core subunit of exon junction complex (EJC)%2C Multiple organ development and reproduction;Transcript_evidence=KF051016 (Zhonghua 10);ORF_evidence=A0A023T669;GO=Biological Process: RNA processing (GO:0006396),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723),Cellular Component: nucleus (GO:0005634),Cellular Component: cytoplasm (GO:0005737);InterPro=RNA-binding motif protein 8 (IPR008111),Nucleotide-binding alpha-beta plait domain (IPR012677),RNA recognition motif domain (IPR000504);Manual Curation=August 5%2C 2014;Literature_PMID=24416299,24820023;Oryzabase=18333
Chr05	irgsp1_rep	CDS	2331147	2331185	.	+	0	Parent=Os05t0140500-02
Chr05	irgsp1_rep	CDS	2331393	2331435	.	+	0	Parent=Os05t0140500-02
Chr05	irgsp1_rep	CDS	2332625	2332761	.	+	2	Parent=Os05t0140500-02
Chr05	irgsp1_rep	CDS	2333058	2333203	.	+	0	Parent=Os05t0140500-02
Chr05	irgsp1_rep	CDS	2333859	2333901	.	+	1	Parent=Os05t0140500-02
Chr05	irgsp1_rep	mRNA	2334716	2339664	.	-	.	ID=Os05t0140600-01;Name=Os05t0140600-01;Locus_id=Os05g0140600;Note=Tudor-like%2C plant domain containing protein.;Transcript_evidence=AK110979 (DDBJ%2C Best hit);ORF_evidence=A2Y086 (UniProt);InterPro=Tudor-like%2C plant (IPR014002);NIAS_FLcDNA=002-174-C07;TENOR=Os05t0140600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	2339475	2339664	.	-	.	Parent=Os05t0140600-01
Chr05	irgsp1_rep	five_prime_UTR	2338100	2338825	.	-	.	Parent=Os05t0140600-01
Chr05	irgsp1_rep	CDS	2337946	2338099	.	-	0	Parent=Os05t0140600-01
Chr05	irgsp1_rep	CDS	2336887	2337149	.	-	2	Parent=Os05t0140600-01
Chr05	irgsp1_rep	CDS	2336346	2336462	.	-	0	Parent=Os05t0140600-01
Chr05	irgsp1_rep	CDS	2336069	2336117	.	-	0	Parent=Os05t0140600-01
Chr05	irgsp1_rep	CDS	2335245	2335474	.	-	2	Parent=Os05t0140600-01
Chr05	irgsp1_rep	three_prime_UTR	2335170	2335244	.	-	.	Parent=Os05t0140600-01
Chr05	irgsp1_rep	three_prime_UTR	2334716	2335074	.	-	.	Parent=Os05t0140600-01
Chr05	irgsp1_rep	mRNA	2345391	2346836	.	-	.	ID=Os05t0140800-01;Name=Os05t0140800-01;Locus_id=Os05g0140800;Note=Similar to Dormancy related protein (Fragment).;Transcript_evidence=AK110652 (DDBJ%2C Best hit);ORF_evidence=B4FNZ9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);NIAS_FLcDNA=002-169-E03;Expression=AK110652;TENOR=Os05t0140800-01;KEGG=Os05t0140800-01
Chr05	irgsp1_rep	five_prime_UTR	2346804	2346836	.	-	.	Parent=Os05t0140800-01
Chr05	irgsp1_rep	CDS	2346492	2346803	.	-	0	Parent=Os05t0140800-01
Chr05	irgsp1_rep	CDS	2345636	2346421	.	-	0	Parent=Os05t0140800-01
Chr05	irgsp1_rep	three_prime_UTR	2345391	2345635	.	-	.	Parent=Os05t0140800-01
Chr05	irgsp1_rep	mRNA	2351573	2354876	.	-	.	ID=Os05t0141000-00;Name=Os05t0141000-00;Locus_id=Os05g0141000;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B8AXW1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-type fold (IPR016024);TENOR=Os05t0141000-00;KEGG=Os05t0141000-00
Chr05	irgsp1_rep	CDS	2352795	2354876	.	-	0	Parent=Os05t0141000-00
Chr05	irgsp1_rep	CDS	2352541	2352609	.	-	0	Parent=Os05t0141000-00
Chr05	irgsp1_rep	CDS	2351989	2352437	.	-	0	Parent=Os05t0141000-00
Chr05	irgsp1_rep	CDS	2351573	2351621	.	-	1	Parent=Os05t0141000-00
Chr05	irgsp1_rep	mRNA	2360209	2360653	.	-	.	ID=Os05t0141050-01;Name=Os05t0141050-01;Locus_id=Os05g0141050;RAP-DB Gene Symbol Synonym(s)=WLS5;RAP-DB Gene Name Synonym(s)=weakness and leaf senescence5;CGSNL Gene Symbol=WLS5;CGSNL Gene Name=WEAKNESS AND LEAF SENESCENCE 5;Oryzabase Gene Symbol Synonym(s)=OsWLS5;Oryzabase Gene Name Synonym(s)=weakness and leaf senescence5;Note=Plant growth and leaf senescence;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;Manual Curation=May 7%2C 2019;Literature_PMID=31037442;Oryzabase=22827
Chr05	irgsp1_rep	CDS	2360412	2360653	.	-	0	Parent=Os05t0141050-01
Chr05	irgsp1_rep	CDS	2360209	2360227	.	-	1	Parent=Os05t0141050-01
Chr05	irgsp1_rep	mRNA	2362763	2371178	.	+	.	ID=Os05t0141100-01;Name=Os05t0141100-01;Locus_id=Os05g0141100;Note=Similar to Tobamovirus multiplication 1 homolog.;Transcript_evidence=AK107510 (DDBJ%2C Best hit);ORF_evidence=Q402E9 (UniProt);InterPro=Domain of unknown function DUF1084 (IPR009457);NIAS_FLcDNA=002-129-E10;TENOR=Os05t0141100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	2362763	2362924	.	+	.	Parent=Os05t0141100-01
Chr05	irgsp1_rep	five_prime_UTR	2369598	2369689	.	+	.	Parent=Os05t0141100-01
Chr05	irgsp1_rep	five_prime_UTR	2370592	2370776	.	+	.	Parent=Os05t0141100-01
Chr05	irgsp1_rep	CDS	2370777	2370848	.	+	0	Parent=Os05t0141100-01
Chr05	irgsp1_rep	CDS	2370958	2371071	.	+	0	Parent=Os05t0141100-01
Chr05	irgsp1_rep	three_prime_UTR	2371072	2371178	.	+	.	Parent=Os05t0141100-01
Chr05	irgsp1_rep	mRNA	2363742	2371823	.	-	.	ID=Os05t0141200-00;Name=Os05t0141200-00;Locus_id=Os05g0141200;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FMD4 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-type fold (IPR016024);TENOR=Os05t0141200-00;KEGG=Os05t0141200-00
Chr05	irgsp1_rep	CDS	2371579	2371823	.	-	0	Parent=Os05t0141200-00
Chr05	irgsp1_rep	CDS	2364937	2366944	.	-	1	Parent=Os05t0141200-00
Chr05	irgsp1_rep	CDS	2364685	2364753	.	-	0	Parent=Os05t0141200-00
Chr05	irgsp1_rep	CDS	2364130	2364578	.	-	0	Parent=Os05t0141200-00
Chr05	irgsp1_rep	CDS	2363742	2363793	.	-	1	Parent=Os05t0141200-00
Chr05	irgsp1_rep	mRNA	2375085	2376419	.	-	.	ID=Os05t0141300-00;Name=Os05t0141300-00;Locus_id=Os05g0141300;Note=Transferase family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001148135.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os05t0141300-00;KEGG=Os05t0141300-00
Chr05	irgsp1_rep	CDS	2375085	2376419	.	-	0	Parent=Os05t0141300-00
Chr05	irgsp1_rep	mRNA	2375442	2376392	.	+	.	ID=Os05t0141350-00;Name=Os05t0141350-00;Locus_id=Os05g0141350;Note=Hypothetical protein.;Transcript_evidence=BT035701 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0141350-00
Chr05	irgsp1_rep	CDS	2375442	2376392	.	+	0	Parent=Os05t0141350-00
Chr05	irgsp1_rep	mRNA	2378791	2381834	.	-	.	ID=Os05t0141400-01;Name=Os05t0141400-01;Locus_id=Os05g0141400;Note=tRNA/rRNA methyltransferase%2C SpoU domain containing protein.;Transcript_evidence=AK071339 (DDBJ%2C Best hit),AK106875 (DDBJ%2C Best hit);ORF_evidence=NP_193287.1 (RefSeq);GO=Biological Process: RNA processing (GO:0006396),Molecular Function: RNA binding (GO:0003723),Molecular Function: RNA methyltransferase activity (GO:0008173);InterPro=tRNA/rRNA methyltransferase%2C SpoU (IPR001537);NIAS_FLcDNA=J023090K18,002-118-E02;Expression=AK071339;TENOR=Os05t0141400-01;KEGG=Os05t0141400-01
Chr05	irgsp1_rep	five_prime_UTR	2381785	2381834	.	-	.	Parent=Os05t0141400-01
Chr05	irgsp1_rep	CDS	2381560	2381784	.	-	0	Parent=Os05t0141400-01
Chr05	irgsp1_rep	CDS	2381332	2381436	.	-	0	Parent=Os05t0141400-01
Chr05	irgsp1_rep	CDS	2380236	2380362	.	-	0	Parent=Os05t0141400-01
Chr05	irgsp1_rep	CDS	2379042	2379259	.	-	2	Parent=Os05t0141400-01
Chr05	irgsp1_rep	three_prime_UTR	2378791	2379041	.	-	.	Parent=Os05t0141400-01
Chr05	irgsp1_rep	mRNA	2382442	2387114	.	-	.	ID=Os05t0141500-01;Name=Os05t0141500-01;Locus_id=Os05g0141500;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=AK103601 (DDBJ%2C Best hit);ORF_evidence=A2Y094 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J033133F19;Expression=AK103601;TENOR=Os05t0141500-01;KEGG=Os05t0141500-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	2386980	2387114	.	-	.	Parent=Os05t0141500-01
Chr05	irgsp1_rep	five_prime_UTR	2386705	2386773	.	-	.	Parent=Os05t0141500-01
Chr05	irgsp1_rep	five_prime_UTR	2386563	2386577	.	-	.	Parent=Os05t0141500-01
Chr05	irgsp1_rep	CDS	2384487	2386562	.	-	0	Parent=Os05t0141500-01
Chr05	irgsp1_rep	CDS	2382602	2383132	.	-	0	Parent=Os05t0141500-01
Chr05	irgsp1_rep	three_prime_UTR	2382442	2382601	.	-	.	Parent=Os05t0141500-01
Chr05	irgsp1_rep	mRNA	2382396	2385343	.	-	.	ID=Os05t0141500-02;Name=Os05t0141500-02;Locus_id=Os05g0141500;Note=Hypothetical conserved gene.;Transcript_evidence=AK064405 (DDBJ%2C Best hit);ORF_evidence=A2Y094 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=002-108-H08;Expression=AK064405;TENOR=Os05t0141500-02;KEGG=Os05t0141500-02
Chr05	irgsp1_rep	five_prime_UTR	2385342	2385343	.	-	.	Parent=Os05t0141500-02
Chr05	irgsp1_rep	CDS	2384487	2385341	.	-	0	Parent=Os05t0141500-02
Chr05	irgsp1_rep	CDS	2382602	2383132	.	-	0	Parent=Os05t0141500-02
Chr05	irgsp1_rep	three_prime_UTR	2382396	2382601	.	-	.	Parent=Os05t0141500-02
Chr05	irgsp1_rep	mRNA	2400650	2401930	.	+	.	ID=Os05t0141700-01;Name=Os05t0141700-01;Locus_id=Os05g0141700;Note=Phosphoglycerate mutase domain containing protein.;Transcript_evidence=AK065644 (DDBJ%2C Best hit);ORF_evidence=NP_187168.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Phosphoglycerate/bisphosphoglycerate mutase%2C active site (IPR001345),Histidine phosphatase superfamily%2C clade-1 (IPR013078);NIAS_FLcDNA=J013037C13;Expression=AK065644;TENOR=Os05t0141700-01;KEGG=Os05t0141700-01
Chr05	irgsp1_rep	five_prime_UTR	2400650	2400734	.	+	.	Parent=Os05t0141700-01
Chr05	irgsp1_rep	CDS	2400735	2401188	.	+	0	Parent=Os05t0141700-01
Chr05	irgsp1_rep	CDS	2401289	2401722	.	+	2	Parent=Os05t0141700-01
Chr05	irgsp1_rep	three_prime_UTR	2401723	2401930	.	+	.	Parent=Os05t0141700-01
Chr05	irgsp1_rep	mRNA	2417277	2418356	.	-	.	ID=Os05t0141800-00;Name=Os05t0141800-00;Locus_id=Os05g0141800;CGSNL Gene Symbol=SAMDC3;CGSNL Gene Name=S-ADENOSYLMETHIONINE DECARBOXYLASE 3;Oryzabase Gene Symbol Synonym(s)=OsSAMDC3;Oryzabase Gene Name Synonym(s)=S-adenosylmethionine decarboxylase 3;Note=Similar to S-adenosylmethionine decarboxylase proenzyme.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FH52 (UniProt);GO=Biological Process: spermine biosynthetic process (GO:0006597),Biological Process: spermidine biosynthetic process (GO:0008295),Molecular Function: adenosylmethionine decarboxylase activity (GO:0004014);InterPro=S-adenosylmethionine decarboxylase (IPR001985),S-adenosylmethionine decarboxylase%2C core (IPR016067),S-adenosylmethionine decarboxylase%2C conserved site (IPR018166),S-adenosylmethionine decarboxylase subgroup (IPR018167);Oryzabase=21666;TENOR=Os05t0141800-00
Chr05	irgsp1_rep	CDS	2417277	2418356	.	-	0	Parent=Os05t0141800-00
Chr05	irgsp1_rep	mRNA	2436924	2437582	.	-	.	ID=Os05t0142000-01;Name=Os05t0142000-01;Locus_id=Os05g0142000;Note=Conserved hypothetical protein.;Transcript_evidence=AK071647 (DDBJ%2C Best hit);ORF_evidence=A2Y099 (UniProt);NIAS_FLcDNA=J023107H06;Expression=AK071647;TENOR=Os05t0142000-01;KEGG=Os05t0142000-01
Chr05	irgsp1_rep	five_prime_UTR	2437454	2437582	.	-	.	Parent=Os05t0142000-01
Chr05	irgsp1_rep	CDS	2437130	2437453	.	-	0	Parent=Os05t0142000-01
Chr05	irgsp1_rep	three_prime_UTR	2436924	2437129	.	-	.	Parent=Os05t0142000-01
Chr05	irgsp1_rep	mRNA	2449418	2450032	.	-	.	ID=Os05t0142100-01;Name=Os05t0142100-01;Locus_id=Os05g0142100;Note=Conserved hypothetical protein.;Transcript_evidence=AK107722 (DDBJ%2C Best hit);ORF_evidence=B9FH54 (UniProt);NIAS_FLcDNA=002-132-E10;Expression=AK107722;TENOR=Os05t0142100-01;KEGG=Os05t0142100-01
Chr05	irgsp1_rep	five_prime_UTR	2449918	2450032	.	-	.	Parent=Os05t0142100-01
Chr05	irgsp1_rep	CDS	2449612	2449917	.	-	0	Parent=Os05t0142100-01
Chr05	irgsp1_rep	three_prime_UTR	2449418	2449611	.	-	.	Parent=Os05t0142100-01
Chr05	irgsp1_rep	mRNA	2452663	2453318	.	-	.	ID=Os05t0142200-00;Name=Os05t0142200-00;Locus_id=Os05g0142200;Note=Conserved hypothetical protein.;Transcript_evidence=CT836420 (DDBJ%2C Best hit);ORF_evidence=NP_001054609.1 (RefSeq);TENOR=Os05t0142200-00;KEGG=Os05t0142200-00
Chr05	irgsp1_rep	five_prime_UTR	2453226	2453318	.	-	.	Parent=Os05t0142200-00
Chr05	irgsp1_rep	CDS	2452923	2453225	.	-	0	Parent=Os05t0142200-00
Chr05	irgsp1_rep	three_prime_UTR	2452663	2452922	.	-	.	Parent=Os05t0142200-00
Chr05	irgsp1_rep	mRNA	2464329	2465034	.	-	.	ID=Os05t0142400-01;Name=Os05t0142400-01;Locus_id=Os05g0142400;Note=Conserved hypothetical protein.;Transcript_evidence=AK062395 (DDBJ%2C Best hit);ORF_evidence=A2Y0A2 (UniProt);NIAS_FLcDNA=001-102-D06;Expression=AK062395;TENOR=Os05t0142400-01;KEGG=Os05t0142400-01
Chr05	irgsp1_rep	five_prime_UTR	2464919	2465034	.	-	.	Parent=Os05t0142400-01
Chr05	irgsp1_rep	CDS	2464682	2464918	.	-	0	Parent=Os05t0142400-01
Chr05	irgsp1_rep	three_prime_UTR	2464329	2464681	.	-	.	Parent=Os05t0142400-01
Chr05	irgsp1_rep	mRNA	2467844	2468065	.	-	.	ID=Os05t0142500-00;Name=Os05t0142500-00;Locus_id=Os05g0142500;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A2Y0A3 (UniProt);TENOR=Os05t0142500-00;KEGG=Os05t0142500-00
Chr05	irgsp1_rep	CDS	2467844	2468065	.	-	0	Parent=Os05t0142500-00
Chr05	irgsp1_rep	mRNA	2470984	2471229	.	-	.	ID=Os05t0142600-00;Name=Os05t0142600-00;Locus_id=Os05g0142600;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001054611.2 (RefSeq);TENOR=Os05t0142600-00;KEGG=Os05t0142600-00
Chr05	irgsp1_rep	CDS	2470984	2471229	.	-	0	Parent=Os05t0142600-00
Chr05	irgsp1_rep	mRNA	2477904	2478474	.	-	.	ID=Os05t0142900-01;Name=Os05t0142900-01;Locus_id=Os05g0142900;Note=Conserved hypothetical protein.;Transcript_evidence=AK119998 (DDBJ%2C Best hit);ORF_evidence=B8AXW6 (UniProt);NIAS_FLcDNA=002-184-H04;Expression=AK119998;TENOR=Os05t0142900-01;KEGG=Os05t0142900-01
Chr05	irgsp1_rep	five_prime_UTR	2478345	2478474	.	-	.	Parent=Os05t0142900-01
Chr05	irgsp1_rep	CDS	2478099	2478344	.	-	0	Parent=Os05t0142900-01
Chr05	irgsp1_rep	three_prime_UTR	2477904	2478098	.	-	.	Parent=Os05t0142900-01
Chr05	irgsp1_rep	mRNA	2482189	2482637	.	-	.	ID=Os05t0143000-01;Name=Os05t0143000-01;Locus_id=Os05g0143000;Note=Conserved hypothetical protein.;Transcript_evidence=AK064113 (DDBJ%2C Best hit);ORF_evidence=B8AXW7 (UniProt);NIAS_FLcDNA=002-101-H08;Expression=AK064113;TENOR=Os05t0143000-01;KEGG=Os05t0143000-01
Chr05	irgsp1_rep	five_prime_UTR	2482528	2482637	.	-	.	Parent=Os05t0143000-01
Chr05	irgsp1_rep	CDS	2482297	2482527	.	-	0	Parent=Os05t0143000-01
Chr05	irgsp1_rep	three_prime_UTR	2482189	2482296	.	-	.	Parent=Os05t0143000-01
Chr05	irgsp1_rep	mRNA	2495028	2499577	.	+	.	ID=Os05t0143200-01;Name=Os05t0143200-01;Locus_id=Os05g0143200;Note=Conserved hypothetical protein.;Transcript_evidence=AK100211 (DDBJ%2C Best hit);ORF_evidence=B9FH59 (UniProt);NIAS_FLcDNA=J023043L04;TENOR=Os05t0143200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	2495028	2495038	.	+	.	Parent=Os05t0143200-01
Chr05	irgsp1_rep	CDS	2495039	2495133	.	+	0	Parent=Os05t0143200-01
Chr05	irgsp1_rep	CDS	2495573	2495642	.	+	1	Parent=Os05t0143200-01
Chr05	irgsp1_rep	CDS	2495832	2495963	.	+	0	Parent=Os05t0143200-01
Chr05	irgsp1_rep	CDS	2496183	2496200	.	+	0	Parent=Os05t0143200-01
Chr05	irgsp1_rep	three_prime_UTR	2496201	2496252	.	+	.	Parent=Os05t0143200-01
Chr05	irgsp1_rep	three_prime_UTR	2496349	2498025	.	+	.	Parent=Os05t0143200-01
Chr05	irgsp1_rep	three_prime_UTR	2498291	2498407	.	+	.	Parent=Os05t0143200-01
Chr05	irgsp1_rep	three_prime_UTR	2498664	2498734	.	+	.	Parent=Os05t0143200-01
Chr05	irgsp1_rep	three_prime_UTR	2499100	2499577	.	+	.	Parent=Os05t0143200-01
Chr05	irgsp1_rep	mRNA	2499927	2503271	.	-	.	ID=Os05t0143300-01;Name=Os05t0143300-01;Locus_id=Os05g0143300;Note=Conserved hypothetical protein.;Transcript_evidence=AK072841 (DDBJ%2C Best hit),AK099030 (DDBJ%2C Best hit);ORF_evidence=B9FH60 (UniProt);NIAS_FLcDNA=J023143G06,J013126M11;Expression=AK072841;TENOR=Os05t0143300-01;KEGG=Os05t0143300-01
Chr05	irgsp1_rep	five_prime_UTR	2503123	2503271	.	-	.	Parent=Os05t0143300-01
Chr05	irgsp1_rep	CDS	2503051	2503122	.	-	0	Parent=Os05t0143300-01
Chr05	irgsp1_rep	CDS	2502763	2502976	.	-	0	Parent=Os05t0143300-01
Chr05	irgsp1_rep	CDS	2501722	2502220	.	-	2	Parent=Os05t0143300-01
Chr05	irgsp1_rep	CDS	2501015	2501089	.	-	1	Parent=Os05t0143300-01
Chr05	irgsp1_rep	CDS	2500143	2500644	.	-	1	Parent=Os05t0143300-01
Chr05	irgsp1_rep	three_prime_UTR	2499927	2500142	.	-	.	Parent=Os05t0143300-01
Chr05	irgsp1_rep	mRNA	2506263	2509289	.	+	.	ID=Os05t0143400-01;Name=Os05t0143400-01;Locus_id=Os05g0143400;Note=Similar to SLD5.;Transcript_evidence=AK241320 (DDBJ%2C Best hit);ORF_evidence=B6U3S0 (UniProt);InterPro=GINS complex%2C subunit Sld5 (IPR008591),GINS complex (IPR021151);NIAS_FLcDNA=J065142J03;TENOR=Os05t0143400-01;KEGG=Os05t0143400-01
Chr05	irgsp1_rep	five_prime_UTR	2506263	2506450	.	+	.	Parent=Os05t0143400-01
Chr05	irgsp1_rep	CDS	2506451	2506621	.	+	0	Parent=Os05t0143400-01
Chr05	irgsp1_rep	CDS	2506739	2506861	.	+	0	Parent=Os05t0143400-01
Chr05	irgsp1_rep	CDS	2506967	2507049	.	+	0	Parent=Os05t0143400-01
Chr05	irgsp1_rep	CDS	2507159	2507268	.	+	1	Parent=Os05t0143400-01
Chr05	irgsp1_rep	CDS	2508507	2508582	.	+	2	Parent=Os05t0143400-01
Chr05	irgsp1_rep	CDS	2508665	2508764	.	+	1	Parent=Os05t0143400-01
Chr05	irgsp1_rep	three_prime_UTR	2508765	2509289	.	+	.	Parent=Os05t0143400-01
Chr05	irgsp1_rep	mRNA	2511547	2518008	.	+	.	ID=Os05t0143500-01;Name=Os05t0143500-01;Locus_id=Os05g0143500;Oryzabase Gene Symbol Synonym(s)=OsMPK14%2C MPK14;Oryzabase Gene Name Synonym(s)=mitogen-activated protein kinase 14;Note=Similar to Mitogen-activated protein kinase 14.;Transcript_evidence=AK099719 (DDBJ%2C Best hit);ORF_evidence=B7E979 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013088B06;Oryzabase=18117;TENOR=Os05t0143500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	2511547	2512052	.	+	.	Parent=Os05t0143500-01
Chr05	irgsp1_rep	five_prime_UTR	2512798	2512809	.	+	.	Parent=Os05t0143500-01
Chr05	irgsp1_rep	CDS	2512810	2513206	.	+	0	Parent=Os05t0143500-01
Chr05	irgsp1_rep	CDS	2514523	2514584	.	+	2	Parent=Os05t0143500-01
Chr05	irgsp1_rep	three_prime_UTR	2514585	2514660	.	+	.	Parent=Os05t0143500-01
Chr05	irgsp1_rep	three_prime_UTR	2514747	2514806	.	+	.	Parent=Os05t0143500-01
Chr05	irgsp1_rep	three_prime_UTR	2515684	2515833	.	+	.	Parent=Os05t0143500-01
Chr05	irgsp1_rep	three_prime_UTR	2515923	2516078	.	+	.	Parent=Os05t0143500-01
Chr05	irgsp1_rep	three_prime_UTR	2516172	2516383	.	+	.	Parent=Os05t0143500-01
Chr05	irgsp1_rep	three_prime_UTR	2516703	2516804	.	+	.	Parent=Os05t0143500-01
Chr05	irgsp1_rep	three_prime_UTR	2516914	2517050	.	+	.	Parent=Os05t0143500-01
Chr05	irgsp1_rep	three_prime_UTR	2517166	2518008	.	+	.	Parent=Os05t0143500-01
Chr05	irgsp1_rep	mRNA	2511637	2517616	.	+	.	ID=Os05t0143500-02;Name=Os05t0143500-02;Locus_id=Os05g0143500;Oryzabase Gene Symbol Synonym(s)=OsMPK14%2C MPK14;Oryzabase Gene Name Synonym(s)=mitogen-activated protein kinase 14;Note=Similar to Mitogen-activated protein kinase 14.;Transcript_evidence=AK063944 (DDBJ%2C Best hit);ORF_evidence=Q75KK8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: MAP kinase activity (GO:0004707),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),MAP kinase%2C conserved site (IPR003527),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-123-E08;Oryzabase=18117;Expression=AK063944;TENOR=Os05t0143500-02;KEGG=Os05t0143500-02
Chr05	irgsp1_rep	five_prime_UTR	2511637	2512052	.	+	.	Parent=Os05t0143500-02
Chr05	irgsp1_rep	five_prime_UTR	2512798	2512809	.	+	.	Parent=Os05t0143500-02
Chr05	irgsp1_rep	CDS	2512810	2513206	.	+	0	Parent=Os05t0143500-02
Chr05	irgsp1_rep	CDS	2514533	2514660	.	+	2	Parent=Os05t0143500-02
Chr05	irgsp1_rep	CDS	2514747	2514806	.	+	0	Parent=Os05t0143500-02
Chr05	irgsp1_rep	CDS	2515684	2515833	.	+	0	Parent=Os05t0143500-02
Chr05	irgsp1_rep	CDS	2515923	2516078	.	+	0	Parent=Os05t0143500-02
Chr05	irgsp1_rep	CDS	2516172	2516383	.	+	0	Parent=Os05t0143500-02
Chr05	irgsp1_rep	CDS	2516703	2516804	.	+	1	Parent=Os05t0143500-02
Chr05	irgsp1_rep	CDS	2516914	2517050	.	+	1	Parent=Os05t0143500-02
Chr05	irgsp1_rep	CDS	2517166	2517452	.	+	2	Parent=Os05t0143500-02
Chr05	irgsp1_rep	three_prime_UTR	2517453	2517616	.	+	.	Parent=Os05t0143500-02
Chr05	irgsp1_rep	mRNA	2516325	2518008	.	+	.	ID=Os05t0143500-03;Name=Os05t0143500-03;Locus_id=Os05g0143500;Oryzabase Gene Symbol Synonym(s)=OsMPK14%2C MPK14;Oryzabase Gene Name Synonym(s)=mitogen-activated protein kinase 14;Note=Similar to Kinase (Fragment).;Transcript_evidence=AK061851 (DDBJ%2C Best hit);ORF_evidence=C4PE55 (UniProt);NIAS_FLcDNA=001-040-F08;Oryzabase=18117;Expression=AK061851;TENOR=Os05t0143500-03;KEGG=Os05t0143500-03
Chr05	irgsp1_rep	CDS	2516325	2516383	.	+	0	Parent=Os05t0143500-03
Chr05	irgsp1_rep	CDS	2516703	2516804	.	+	1	Parent=Os05t0143500-03
Chr05	irgsp1_rep	CDS	2516914	2517050	.	+	1	Parent=Os05t0143500-03
Chr05	irgsp1_rep	CDS	2517166	2517452	.	+	2	Parent=Os05t0143500-03
Chr05	irgsp1_rep	three_prime_UTR	2517453	2518008	.	+	.	Parent=Os05t0143500-03
Chr05	irgsp1_rep	mRNA	2516123	2520599	.	-	.	ID=Os05t0143550-01;Name=Os05t0143550-01;Locus_id=Os05g0143550;Note=Similar to Blast and wounding induced mitogen-activated protein kinase.;Transcript_evidence=AK243017 (DDBJ%2C Best hit);ORF_evidence=NP_001174214.1 (RefSeq);NIAS_FLcDNA=J090098N17;TENOR=Os05t0143550-01;KEGG=Os05t0143550-01
Chr05	irgsp1_rep	five_prime_UTR	2517400	2520599	.	-	.	Parent=Os05t0143550-01
Chr05	irgsp1_rep	CDS	2517151	2517399	.	-	0	Parent=Os05t0143550-01
Chr05	irgsp1_rep	three_prime_UTR	2516123	2517150	.	-	.	Parent=Os05t0143550-01
Chr05	irgsp1_rep	mRNA	2520805	2521622	.	+	.	ID=Os05t0143600-01;Name=Os05t0143600-01;Locus_id=Os05g0143600;Note=Similar to Jasmonate-induced protein.;Transcript_evidence=AK107844 (DDBJ%2C Best hit);ORF_evidence=A2Y0B0 (UniProt);InterPro=Mannose-binding lectin (IPR001229);NIAS_FLcDNA=002-134-A01;Expression=AK107844;TENOR=Os05t0143600-01;KEGG=Os05t0143600-01
Chr05	irgsp1_rep	five_prime_UTR	2520805	2520830	.	+	.	Parent=Os05t0143600-01
Chr05	irgsp1_rep	CDS	2520831	2521289	.	+	0	Parent=Os05t0143600-01
Chr05	irgsp1_rep	three_prime_UTR	2521290	2521622	.	+	.	Parent=Os05t0143600-01
Chr05	irgsp1_rep	mRNA	2521840	2522871	.	-	.	ID=Os05t0143700-00;Name=Os05t0143700-00;Locus_id=Os05g0143700;Note=Hypothetical conserved gene.;Transcript_evidence=tplb0006p17 (Wheat FLcDNA);ORF_evidence=B9FH62 (UniProt);TENOR=Os05t0143700-00;KEGG=Os05t0143700-00
Chr05	irgsp1_rep	CDS	2522128	2522871	.	-	0	Parent=Os05t0143700-00
Chr05	irgsp1_rep	three_prime_UTR	2521840	2522127	.	-	.	Parent=Os05t0143700-00
Chr05	irgsp1_rep	mRNA	2522927	2525192	.	-	.	ID=Os05t0143800-01;Name=Os05t0143800-01;Locus_id=Os05g0143800;CGSNL Gene Symbol=GH3-6;CGSNL Gene Name=GH3-6;Oryzabase Gene Symbol Synonym(s)=OsGH3-6%2C OsGH3.6%2C GH3.6;Note=GH3 auxin-responsive promoter domain containing protein.;Transcript_evidence=AK106538 (DDBJ%2C Best hit);ORF_evidence=B8AXX0 (UniProt);InterPro=GH3 auxin-responsive promoter (IPR004993);NIAS_FLcDNA=002-108-C10;Oryzabase=11625;TENOR=Os05t0143800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	2525160	2525192	.	-	.	Parent=Os05t0143800-01
Chr05	irgsp1_rep	CDS	2524818	2525159	.	-	0	Parent=Os05t0143800-01
Chr05	irgsp1_rep	CDS	2524626	2524735	.	-	0	Parent=Os05t0143800-01
Chr05	irgsp1_rep	CDS	2523174	2524551	.	-	1	Parent=Os05t0143800-01
Chr05	irgsp1_rep	three_prime_UTR	2522927	2523173	.	-	.	Parent=Os05t0143800-01
Chr05	irgsp1_rep	mRNA	2528977	2536253	.	-	.	ID=Os05t0144000-01;Name=Os05t0144000-01;Locus_id=Os05g0144000;Note=Membrane bound O-acyl transferase%2C MBOAT family protein.;Transcript_evidence=AK067112 (DDBJ%2C Best hit);ORF_evidence=NP_001148875.1 (RefSeq);InterPro=Membrane bound O-acyl transferase%2C MBOAT (IPR004299);NIAS_FLcDNA=J013095A01;Expression=AK067112;TENOR=Os05t0144000-01;KEGG=Os05t0144000-01
Chr05	irgsp1_rep	five_prime_UTR	2535982	2536253	.	-	.	Parent=Os05t0144000-01
Chr05	irgsp1_rep	CDS	2535888	2535981	.	-	0	Parent=Os05t0144000-01
Chr05	irgsp1_rep	CDS	2535746	2535801	.	-	2	Parent=Os05t0144000-01
Chr05	irgsp1_rep	CDS	2535468	2535649	.	-	0	Parent=Os05t0144000-01
Chr05	irgsp1_rep	CDS	2535341	2535389	.	-	1	Parent=Os05t0144000-01
Chr05	irgsp1_rep	CDS	2534492	2534595	.	-	0	Parent=Os05t0144000-01
Chr05	irgsp1_rep	CDS	2534325	2534389	.	-	1	Parent=Os05t0144000-01
Chr05	irgsp1_rep	CDS	2534130	2534200	.	-	2	Parent=Os05t0144000-01
Chr05	irgsp1_rep	CDS	2533675	2533734	.	-	0	Parent=Os05t0144000-01
Chr05	irgsp1_rep	CDS	2533078	2533191	.	-	0	Parent=Os05t0144000-01
Chr05	irgsp1_rep	CDS	2531818	2531942	.	-	0	Parent=Os05t0144000-01
Chr05	irgsp1_rep	CDS	2531690	2531741	.	-	1	Parent=Os05t0144000-01
Chr05	irgsp1_rep	CDS	2531228	2531290	.	-	0	Parent=Os05t0144000-01
Chr05	irgsp1_rep	CDS	2530961	2531070	.	-	0	Parent=Os05t0144000-01
Chr05	irgsp1_rep	CDS	2530543	2530635	.	-	1	Parent=Os05t0144000-01
Chr05	irgsp1_rep	CDS	2530364	2530445	.	-	1	Parent=Os05t0144000-01
Chr05	irgsp1_rep	CDS	2529895	2529972	.	-	0	Parent=Os05t0144000-01
Chr05	irgsp1_rep	CDS	2529556	2529631	.	-	0	Parent=Os05t0144000-01
Chr05	irgsp1_rep	CDS	2529418	2529467	.	-	2	Parent=Os05t0144000-01
Chr05	irgsp1_rep	CDS	2529294	2529335	.	-	0	Parent=Os05t0144000-01
Chr05	irgsp1_rep	three_prime_UTR	2528977	2529293	.	-	.	Parent=Os05t0144000-01
Chr05	irgsp1_rep	mRNA	2537632	2540611	.	+	.	ID=Os05t0144100-01;Name=Os05t0144100-01;Locus_id=Os05g0144100;Oryzabase Gene Symbol Synonym(s)=OsWD40-113;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK069280 (DDBJ%2C Best hit);ORF_evidence=B6U179 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J023010M10;Oryzabase=10794;Expression=AK069280;TENOR=Os05t0144100-01;KEGG=Os05t0144100-01
Chr05	irgsp1_rep	five_prime_UTR	2537632	2537632	.	+	.	Parent=Os05t0144100-01
Chr05	irgsp1_rep	CDS	2537633	2537680	.	+	0	Parent=Os05t0144100-01
Chr05	irgsp1_rep	CDS	2538139	2538216	.	+	0	Parent=Os05t0144100-01
Chr05	irgsp1_rep	CDS	2538353	2538529	.	+	0	Parent=Os05t0144100-01
Chr05	irgsp1_rep	CDS	2538714	2538791	.	+	0	Parent=Os05t0144100-01
Chr05	irgsp1_rep	CDS	2539091	2539263	.	+	0	Parent=Os05t0144100-01
Chr05	irgsp1_rep	CDS	2539391	2539546	.	+	1	Parent=Os05t0144100-01
Chr05	irgsp1_rep	CDS	2539970	2540030	.	+	1	Parent=Os05t0144100-01
Chr05	irgsp1_rep	CDS	2540228	2540446	.	+	0	Parent=Os05t0144100-01
Chr05	irgsp1_rep	three_prime_UTR	2540447	2540611	.	+	.	Parent=Os05t0144100-01
Chr05	irgsp1_rep	mRNA	2542008	2545886	.	+	.	ID=Os05t0144150-00;Name=Os05t0144150-00;Locus_id=Os05g0144150;Note=Hypothetical gene.;Transcript_evidence=BT084538 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0144150-00;KEGG=Os05t0144150-00
Chr05	irgsp1_rep	five_prime_UTR	2542008	2542083	.	+	.	Parent=Os05t0144150-00
Chr05	irgsp1_rep	five_prime_UTR	2542161	2542220	.	+	.	Parent=Os05t0144150-00
Chr05	irgsp1_rep	five_prime_UTR	2543147	2543215	.	+	.	Parent=Os05t0144150-00
Chr05	irgsp1_rep	CDS	2543216	2543278	.	+	0	Parent=Os05t0144150-00
Chr05	irgsp1_rep	CDS	2543368	2543472	.	+	0	Parent=Os05t0144150-00
Chr05	irgsp1_rep	CDS	2543943	2544041	.	+	0	Parent=Os05t0144150-00
Chr05	irgsp1_rep	CDS	2544351	2544413	.	+	0	Parent=Os05t0144150-00
Chr05	irgsp1_rep	three_prime_UTR	2544414	2544466	.	+	.	Parent=Os05t0144150-00
Chr05	irgsp1_rep	three_prime_UTR	2544590	2544663	.	+	.	Parent=Os05t0144150-00
Chr05	irgsp1_rep	three_prime_UTR	2544861	2544942	.	+	.	Parent=Os05t0144150-00
Chr05	irgsp1_rep	three_prime_UTR	2545027	2545212	.	+	.	Parent=Os05t0144150-00
Chr05	irgsp1_rep	three_prime_UTR	2545669	2545886	.	+	.	Parent=Os05t0144150-00
Chr05	irgsp1_rep	mRNA	2541405	2545965	.	-	.	ID=Os05t0144200-01;Name=Os05t0144200-01;Locus_id=Os05g0144200;Note=Similar to glioma tumor suppressor-like protein.;Transcript_evidence=AK242272 (DDBJ%2C Best hit);ORF_evidence=B6T3I5 (UniProt);InterPro=Tumour suppressor protein Gltscr2 (IPR011211),P60-like (IPR011687);NIAS_FLcDNA=J075187B20;TENOR=Os05t0144200-01;KEGG=Os05t0144200-01
Chr05	irgsp1_rep	five_prime_UTR	2545883	2545965	.	-	.	Parent=Os05t0144200-01
Chr05	irgsp1_rep	CDS	2545654	2545882	.	-	0	Parent=Os05t0144200-01
Chr05	irgsp1_rep	CDS	2545028	2545206	.	-	2	Parent=Os05t0144200-01
Chr05	irgsp1_rep	CDS	2544872	2544943	.	-	0	Parent=Os05t0144200-01
Chr05	irgsp1_rep	CDS	2544591	2544671	.	-	0	Parent=Os05t0144200-01
Chr05	irgsp1_rep	CDS	2544357	2544467	.	-	0	Parent=Os05t0144200-01
Chr05	irgsp1_rep	CDS	2543954	2544039	.	-	0	Parent=Os05t0144200-01
Chr05	irgsp1_rep	CDS	2543365	2543484	.	-	1	Parent=Os05t0144200-01
Chr05	irgsp1_rep	CDS	2543153	2543275	.	-	1	Parent=Os05t0144200-01
Chr05	irgsp1_rep	CDS	2542162	2542228	.	-	1	Parent=Os05t0144200-01
Chr05	irgsp1_rep	CDS	2542008	2542084	.	-	0	Parent=Os05t0144200-01
Chr05	irgsp1_rep	CDS	2541772	2541784	.	-	1	Parent=Os05t0144200-01
Chr05	irgsp1_rep	three_prime_UTR	2541405	2541771	.	-	.	Parent=Os05t0144200-01
Chr05	irgsp1_rep	mRNA	2548660	2559171	.	-	.	ID=Os05t0144300-01;Name=Os05t0144300-01;Locus_id=Os05g0144300;Note=DEAD-like helicase%2C N-terminal domain containing protein.;Transcript_evidence=AK068173 (DDBJ%2C Best hit);ORF_evidence=XP_002311608.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524);InterPro=SNF2-related (IPR000330),Helicase%2C C-terminal (IPR001650),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J013133N02;Expression=AK068173;TENOR=Os05t0144300-01;KEGG=Os05t0144300-01 (EC:3.6.1.-)
Chr05	irgsp1_rep	five_prime_UTR	2559087	2559171	.	-	.	Parent=Os05t0144300-01
Chr05	irgsp1_rep	CDS	2558748	2559086	.	-	0	Parent=Os05t0144300-01
Chr05	irgsp1_rep	CDS	2557583	2557718	.	-	0	Parent=Os05t0144300-01
Chr05	irgsp1_rep	CDS	2557011	2557075	.	-	2	Parent=Os05t0144300-01
Chr05	irgsp1_rep	CDS	2555125	2555319	.	-	0	Parent=Os05t0144300-01
Chr05	irgsp1_rep	CDS	2554879	2555028	.	-	0	Parent=Os05t0144300-01
Chr05	irgsp1_rep	CDS	2553845	2554243	.	-	0	Parent=Os05t0144300-01
Chr05	irgsp1_rep	CDS	2552556	2552815	.	-	0	Parent=Os05t0144300-01
Chr05	irgsp1_rep	CDS	2552240	2552458	.	-	1	Parent=Os05t0144300-01
Chr05	irgsp1_rep	CDS	2551393	2551594	.	-	1	Parent=Os05t0144300-01
Chr05	irgsp1_rep	CDS	2551017	2551170	.	-	0	Parent=Os05t0144300-01
Chr05	irgsp1_rep	CDS	2550170	2550769	.	-	2	Parent=Os05t0144300-01
Chr05	irgsp1_rep	CDS	2548926	2549593	.	-	2	Parent=Os05t0144300-01
Chr05	irgsp1_rep	three_prime_UTR	2548660	2548925	.	-	.	Parent=Os05t0144300-01
Chr05	irgsp1_rep	mRNA	2564221	2573089	.	+	.	ID=Os05t0144400-01;Name=Os05t0144400-01;Locus_id=Os05g0144400;Oryzabase Gene Symbol Synonym(s)=OsPPKL2%2C OsPP73;Oryzabase Gene Name Synonym(s)=protein phosphatase with Kelch-like repeat domain 2%2C Protein phosphatase 73;Note=Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase domain containing protein.;Transcript_evidence=AK120211 (DDBJ%2C Best hit);ORF_evidence=Q60EX6 (UniProt);GO=Molecular Function: phosphoprotein phosphatase activity (GO:0004721),Molecular Function: iron ion binding (GO:0005506),Molecular Function: protein binding (GO:0005515),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: manganese ion binding (GO:0030145);InterPro=Metallophosphoesterase domain (IPR004843),Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (IPR006186),Serine/threonine protein phosphatase%2C BSU1 (IPR012391),Kelch-type beta propeller (IPR015915);NIAS_FLcDNA=J013039A16;Oryzabase=11678;TENOR=Os05t0144400-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	2564221	2564359	.	+	.	Parent=Os05t0144400-01
Chr05	irgsp1_rep	CDS	2564360	2564573	.	+	0	Parent=Os05t0144400-01
Chr05	irgsp1_rep	CDS	2564713	2564773	.	+	2	Parent=Os05t0144400-01
Chr05	irgsp1_rep	CDS	2565088	2565166	.	+	1	Parent=Os05t0144400-01
Chr05	irgsp1_rep	CDS	2565258	2565337	.	+	0	Parent=Os05t0144400-01
Chr05	irgsp1_rep	CDS	2565443	2565537	.	+	1	Parent=Os05t0144400-01
Chr05	irgsp1_rep	CDS	2566145	2566244	.	+	2	Parent=Os05t0144400-01
Chr05	irgsp1_rep	CDS	2567044	2567113	.	+	1	Parent=Os05t0144400-01
Chr05	irgsp1_rep	CDS	2568054	2568155	.	+	0	Parent=Os05t0144400-01
Chr05	irgsp1_rep	CDS	2568369	2568450	.	+	0	Parent=Os05t0144400-01
Chr05	irgsp1_rep	CDS	2568534	2568701	.	+	2	Parent=Os05t0144400-01
Chr05	irgsp1_rep	CDS	2569238	2569379	.	+	2	Parent=Os05t0144400-01
Chr05	irgsp1_rep	CDS	2569483	2569711	.	+	1	Parent=Os05t0144400-01
Chr05	irgsp1_rep	CDS	2570358	2570528	.	+	0	Parent=Os05t0144400-01
Chr05	irgsp1_rep	CDS	2570597	2570835	.	+	0	Parent=Os05t0144400-01
Chr05	irgsp1_rep	CDS	2570997	2571081	.	+	1	Parent=Os05t0144400-01
Chr05	irgsp1_rep	CDS	2571175	2571273	.	+	0	Parent=Os05t0144400-01
Chr05	irgsp1_rep	CDS	2571351	2571550	.	+	0	Parent=Os05t0144400-01
Chr05	irgsp1_rep	CDS	2571629	2571704	.	+	1	Parent=Os05t0144400-01
Chr05	irgsp1_rep	CDS	2571860	2571995	.	+	0	Parent=Os05t0144400-01
Chr05	irgsp1_rep	CDS	2572073	2572212	.	+	2	Parent=Os05t0144400-01
Chr05	irgsp1_rep	CDS	2572396	2572479	.	+	0	Parent=Os05t0144400-01
Chr05	irgsp1_rep	three_prime_UTR	2572480	2573089	.	+	.	Parent=Os05t0144400-01
Chr05	irgsp1_rep	mRNA	2584804	2590118	.	-	.	ID=Os05t0144800-01;Name=Os05t0144800-01;Locus_id=Os05g0144800;Oryzabase Gene Symbol Synonym(s)=OsXPD%2C XPD;Oryzabase Gene Name Synonym(s)=Xeroderma pigmentosum (XP) complementation group of protein D%2C XERODERMA PIGMENTOSUM D;Note=Similar to TFIIH basal transcription factor complex helicase subunit (EC 3.6.1.-) (DNA-repair protein complementing XP-D cells) (Xeroderma pigmentosum group D complementing protein) (CXPD) (DNA excision repair protein ERCC-2).;Transcript_evidence=AK099724 (DDBJ%2C Best hit);ORF_evidence=NP_001152321.1 (RefSeq);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Biological Process: nucleotide-excision repair (GO:0006289),Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP-dependent DNA helicase activity (GO:0004003),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026),Molecular Function: hydrolase activity%2C acting on acid anhydrides (GO:0016817),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides (GO:0016818);InterPro=Xeroderma pigmentosum group D protein (IPR001945),Helicase-like%2C DEXD box c2 type (IPR006554),Helicase%2C ATP-dependent%2C c2 type (IPR006555),DEAD2 (IPR010614),Domain of unknown function DUF1227 (IPR010643),DNA helicase (DNA repair)%2C Rad3 type (IPR013020),Helicase%2C superfamily 1/2%2C ATP-binding domain%2C DinG/Rad3-type (IPR014013);NIAS_FLcDNA=J013089B16;Oryzabase=15523;Expression=AK099724;TENOR=Os05t0144800-01;KEGG=Os05t0144800-01 (EC:3.6.1.-)
Chr05	irgsp1_rep	five_prime_UTR	2589980	2590118	.	-	.	Parent=Os05t0144800-01
Chr05	irgsp1_rep	CDS	2589156	2589979	.	-	0	Parent=Os05t0144800-01
Chr05	irgsp1_rep	CDS	2588916	2588998	.	-	1	Parent=Os05t0144800-01
Chr05	irgsp1_rep	CDS	2588405	2588808	.	-	2	Parent=Os05t0144800-01
Chr05	irgsp1_rep	CDS	2588109	2588302	.	-	0	Parent=Os05t0144800-01
Chr05	irgsp1_rep	CDS	2587685	2587865	.	-	1	Parent=Os05t0144800-01
Chr05	irgsp1_rep	CDS	2587176	2587300	.	-	0	Parent=Os05t0144800-01
Chr05	irgsp1_rep	CDS	2586455	2586544	.	-	1	Parent=Os05t0144800-01
Chr05	irgsp1_rep	CDS	2586192	2586270	.	-	1	Parent=Os05t0144800-01
Chr05	irgsp1_rep	CDS	2586004	2586080	.	-	0	Parent=Os05t0144800-01
Chr05	irgsp1_rep	CDS	2585472	2585580	.	-	1	Parent=Os05t0144800-01
Chr05	irgsp1_rep	CDS	2585097	2585207	.	-	0	Parent=Os05t0144800-01
Chr05	irgsp1_rep	three_prime_UTR	2584804	2585096	.	-	.	Parent=Os05t0144800-01
Chr05	irgsp1_rep	mRNA	2595500	2598458	.	+	.	ID=Os05t0144900-01;Name=Os05t0144900-01;Locus_id=Os05g0144900;Note=Similar to cDNA clone:001-114-A01%2C full insert sequence.;Transcript_evidence=AK064563 (DDBJ%2C Best hit);ORF_evidence=B7E8F4 (UniProt);InterPro=Sucrose-phosphate synthase (IPR006380),HAD-like domain (IPR023214);NIAS_FLcDNA=002-112-D01;TENOR=Os05t0144900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	2595500	2595597	.	+	.	Parent=Os05t0144900-01
Chr05	irgsp1_rep	CDS	2595598	2595657	.	+	0	Parent=Os05t0144900-01
Chr05	irgsp1_rep	CDS	2595763	2596066	.	+	0	Parent=Os05t0144900-01
Chr05	irgsp1_rep	CDS	2596149	2596150	.	+	2	Parent=Os05t0144900-01
Chr05	irgsp1_rep	three_prime_UTR	2596151	2596246	.	+	.	Parent=Os05t0144900-01
Chr05	irgsp1_rep	three_prime_UTR	2596343	2596537	.	+	.	Parent=Os05t0144900-01
Chr05	irgsp1_rep	three_prime_UTR	2596640	2597432	.	+	.	Parent=Os05t0144900-01
Chr05	irgsp1_rep	three_prime_UTR	2597657	2597703	.	+	.	Parent=Os05t0144900-01
Chr05	irgsp1_rep	three_prime_UTR	2598101	2598458	.	+	.	Parent=Os05t0144900-01
Chr05	irgsp1_rep	mRNA	2598549	2604164	.	-	.	ID=Os05t0145000-01;Name=Os05t0145000-01;Locus_id=Os05g0145000;RAP-DB Gene Symbol Synonym(s)=PTB1;RAP-DB Gene Name Synonym(s)=POLLEN TUBE BLOCKED 1;CGSNL Gene Symbol=PTB1;CGSNL Gene Name=POLLEN TUBE BLOCKED 1;Note=RING-type E3 ubiquitin ligase%2C Control of pollen tube growth%2C Regulation of seed setting rate;Transcript_evidence=AK073253,KC425226 (indica);ORF_evidence=Q6AUI1,U5Q3R8 (indica);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841);Manual Curation=July 7%2C 2016;Literature_PMID=24240868;Oryzabase=8872;TENOR=Os05t0145000-01
Chr05	irgsp1_rep	five_prime_UTR	2603863	2604164	.	-	.	Parent=Os05t0145000-01
Chr05	irgsp1_rep	CDS	2603834	2603862	.	-	0	Parent=Os05t0145000-01
Chr05	irgsp1_rep	CDS	2603700	2603738	.	-	1	Parent=Os05t0145000-01
Chr05	irgsp1_rep	CDS	2603179	2603245	.	-	1	Parent=Os05t0145000-01
Chr05	irgsp1_rep	CDS	2603031	2603104	.	-	0	Parent=Os05t0145000-01
Chr05	irgsp1_rep	CDS	2601506	2601644	.	-	1	Parent=Os05t0145000-01
Chr05	irgsp1_rep	CDS	2601330	2601422	.	-	0	Parent=Os05t0145000-01
Chr05	irgsp1_rep	CDS	2600724	2600789	.	-	0	Parent=Os05t0145000-01
Chr05	irgsp1_rep	CDS	2600402	2600518	.	-	0	Parent=Os05t0145000-01
Chr05	irgsp1_rep	CDS	2599746	2599859	.	-	0	Parent=Os05t0145000-01
Chr05	irgsp1_rep	CDS	2598717	2599139	.	-	0	Parent=Os05t0145000-01
Chr05	irgsp1_rep	three_prime_UTR	2598549	2598716	.	-	.	Parent=Os05t0145000-01
Chr05	irgsp1_rep	mRNA	2605446	2606264	.	-	.	ID=Os05t0145100-01;Name=Os05t0145100-01;Locus_id=Os05g0145100;Note=Conserved hypothetical protein.;Transcript_evidence=AK107957 (DDBJ%2C Best hit);ORF_evidence=B8AXX5 (UniProt);NIAS_FLcDNA=002-135-C05;Expression=AK107957;TENOR=Os05t0145100-01;KEGG=Os05t0145100-01
Chr05	irgsp1_rep	five_prime_UTR	2606221	2606264	.	-	.	Parent=Os05t0145100-01
Chr05	irgsp1_rep	CDS	2605678	2606220	.	-	0	Parent=Os05t0145100-01
Chr05	irgsp1_rep	three_prime_UTR	2605446	2605677	.	-	.	Parent=Os05t0145100-01
Chr05	irgsp1_rep	mRNA	2609407	2612536	.	+	.	ID=Os05t0145300-01;Name=Os05t0145300-01;Locus_id=Os05g0145300;Note=RNA-binding%2C CRM domain domain containing protein.;Transcript_evidence=AK288941 (DDBJ%2C Best hit);ORF_evidence=NP_189392.1 (RefSeq);GO=Molecular Function: RNA binding (GO:0003723);InterPro=RNA-binding%2C CRM domain (IPR001890);NIAS_FLcDNA=J090083C12;TENOR=Os05t0145300-01;KEGG=Os05t0145300-01
Chr05	irgsp1_rep	five_prime_UTR	2609407	2609537	.	+	.	Parent=Os05t0145300-01
Chr05	irgsp1_rep	CDS	2609538	2609879	.	+	0	Parent=Os05t0145300-01
Chr05	irgsp1_rep	CDS	2610489	2610890	.	+	0	Parent=Os05t0145300-01
Chr05	irgsp1_rep	CDS	2611186	2612124	.	+	0	Parent=Os05t0145300-01
Chr05	irgsp1_rep	three_prime_UTR	2612125	2612536	.	+	.	Parent=Os05t0145300-01
Chr05	irgsp1_rep	mRNA	2609455	2610733	.	+	.	ID=Os05t0145300-02;Name=Os05t0145300-02;Locus_id=Os05g0145300;Note=Similar to predicted protein.;Transcript_evidence=AK243398 (DDBJ%2C Best hit);ORF_evidence=NP_189392.1 (RefSeq);GO=Molecular Function: RNA binding (GO:0003723);InterPro=RNA-binding%2C CRM domain (IPR001890);NIAS_FLcDNA=J100064G04;TENOR=Os05t0145300-02
Chr05	irgsp1_rep	five_prime_UTR	2609455	2609537	.	+	.	Parent=Os05t0145300-02
Chr05	irgsp1_rep	CDS	2609538	2609879	.	+	0	Parent=Os05t0145300-02
Chr05	irgsp1_rep	CDS	2610489	2610733	.	+	0	Parent=Os05t0145300-02
Chr05	irgsp1_rep	mRNA	2612817	2617247	.	-	.	ID=Os05t0145400-01;Name=Os05t0145400-01;Locus_id=Os05g0145400;RAP-DB Gene Symbol Synonym(s)=OsVIL4;RAP-DB Gene Name Synonym(s)=VERNALIZATION INSENSITIVE 3-LIKE 4;Oryzabase Gene Symbol Synonym(s)=OsVIL3%2C OsVIL4%2C VIL1;Oryzabase Gene Name Synonym(s)=VIN3-LIKE 3%2C VERNALIZATION INSENSITIVE 3-LIKE 4%2C VERNALIZATION INSENSITIVE 3-LIKE 1;Note=PHD%2C FNIII%2C and VID domains containing protein;Transcript_evidence=AK106860;ORF_evidence=Q6AUH8;GO=Molecular Function: protein binding (GO:0005515);InterPro=Immunoglobulin-like fold (IPR013783),Fibronectin type III superfamily (IPR036116),Oberon%2C PHD finger domain (IPR032881),Fibronectin type III (IPR003961);NIAS_FLcDNA=002-118-C02;Manual Curation=September 19%2C 2017;Literature_PMID=22973062;Oryzabase=11845;Expression=AK106860;TENOR=Os05t0145400-01;KEGG=Os05t0145400-01
Chr05	irgsp1_rep	five_prime_UTR	2616919	2617247	.	-	.	Parent=Os05t0145400-01
Chr05	irgsp1_rep	five_prime_UTR	2615845	2616028	.	-	.	Parent=Os05t0145400-01
Chr05	irgsp1_rep	CDS	2615411	2615844	.	-	0	Parent=Os05t0145400-01
Chr05	irgsp1_rep	CDS	2614396	2614697	.	-	1	Parent=Os05t0145400-01
Chr05	irgsp1_rep	CDS	2613205	2614292	.	-	2	Parent=Os05t0145400-01
Chr05	irgsp1_rep	three_prime_UTR	2612817	2613204	.	-	.	Parent=Os05t0145400-01
Chr05	irgsp1_rep	mRNA	2613140	2616029	.	+	.	ID=Os05t0145500-00;Name=Os05t0145500-00;Locus_id=Os05g0145500;Note=Hypothetical protein.;Transcript_evidence=tplb0048h04 (Wheat FLcDNA);ORF_evidence=longestORF;Oryzabase=23505;TENOR=Os05t0145500-00
Chr05	irgsp1_rep	five_prime_UTR	2613140	2613268	.	+	.	Parent=Os05t0145500-00
Chr05	irgsp1_rep	CDS	2613269	2613655	.	+	0	Parent=Os05t0145500-00
Chr05	irgsp1_rep	three_prime_UTR	2613656	2614283	.	+	.	Parent=Os05t0145500-00
Chr05	irgsp1_rep	three_prime_UTR	2614388	2614697	.	+	.	Parent=Os05t0145500-00
Chr05	irgsp1_rep	three_prime_UTR	2615411	2616029	.	+	.	Parent=Os05t0145500-00
Chr05	irgsp1_rep	mRNA	2618176	2624299	.	-	.	ID=Os05t0145600-01;Name=Os05t0145600-01;Locus_id=Os05g0145600;Oryzabase Gene Symbol Synonym(s)=RBP-23;Oryzabase Gene Name Synonym(s)=RNA-binding RBP-23;Note=Pentatricopeptide repeat containing protein.;Transcript_evidence=AK063945 (DDBJ%2C Best hit),AK101887 (DDBJ%2C Best hit);ORF_evidence=NP_567990.1 (RefSeq);NIAS_FLcDNA=001-123-E09,J033070M02;Oryzabase=22093;TENOR=Os05t0145600-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	2624191	2624299	.	-	.	Parent=Os05t0145600-01
Chr05	irgsp1_rep	CDS	2624157	2624190	.	-	0	Parent=Os05t0145600-01
Chr05	irgsp1_rep	CDS	2623915	2624071	.	-	2	Parent=Os05t0145600-01
Chr05	irgsp1_rep	CDS	2622586	2622745	.	-	1	Parent=Os05t0145600-01
Chr05	irgsp1_rep	CDS	2622434	2622499	.	-	0	Parent=Os05t0145600-01
Chr05	irgsp1_rep	CDS	2622221	2622318	.	-	0	Parent=Os05t0145600-01
Chr05	irgsp1_rep	CDS	2621599	2621716	.	-	1	Parent=Os05t0145600-01
Chr05	irgsp1_rep	CDS	2621302	2621511	.	-	0	Parent=Os05t0145600-01
Chr05	irgsp1_rep	CDS	2620811	2620887	.	-	0	Parent=Os05t0145600-01
Chr05	irgsp1_rep	CDS	2620282	2620372	.	-	1	Parent=Os05t0145600-01
Chr05	irgsp1_rep	CDS	2619421	2619486	.	-	0	Parent=Os05t0145600-01
Chr05	irgsp1_rep	CDS	2619264	2619341	.	-	0	Parent=Os05t0145600-01
Chr05	irgsp1_rep	CDS	2619002	2619103	.	-	0	Parent=Os05t0145600-01
Chr05	irgsp1_rep	CDS	2618634	2618741	.	-	0	Parent=Os05t0145600-01
Chr05	irgsp1_rep	three_prime_UTR	2618176	2618633	.	-	.	Parent=Os05t0145600-01
Chr05	irgsp1_rep	mRNA	2618514	2621365	.	+	.	ID=Os05t0145650-00;Name=Os05t0145650-00;Locus_id=Os05g0145650;Note=Hypothetical gene.;Transcript_evidence=BT019052 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0145650-00;KEGG=Os05t0145650-00
Chr05	irgsp1_rep	five_prime_UTR	2618514	2618570	.	+	.	Parent=Os05t0145650-00
Chr05	irgsp1_rep	CDS	2618571	2618737	.	+	0	Parent=Os05t0145650-00
Chr05	irgsp1_rep	CDS	2618997	2619048	.	+	1	Parent=Os05t0145650-00
Chr05	irgsp1_rep	three_prime_UTR	2619049	2619089	.	+	.	Parent=Os05t0145650-00
Chr05	irgsp1_rep	three_prime_UTR	2619251	2619330	.	+	.	Parent=Os05t0145650-00
Chr05	irgsp1_rep	three_prime_UTR	2619411	2619482	.	+	.	Parent=Os05t0145650-00
Chr05	irgsp1_rep	three_prime_UTR	2620270	2620370	.	+	.	Parent=Os05t0145650-00
Chr05	irgsp1_rep	three_prime_UTR	2620809	2620902	.	+	.	Parent=Os05t0145650-00
Chr05	irgsp1_rep	three_prime_UTR	2621317	2621365	.	+	.	Parent=Os05t0145650-00
Chr05	irgsp1_rep	mRNA	2625815	2630378	.	-	.	ID=Os05t0145700-01;Name=Os05t0145700-01;Locus_id=Os05g0145700;Note=Peptidase%2C trypsin-like serine and cysteine domain containing protein.;Transcript_evidence=AK069656 (DDBJ%2C Best hit);ORF_evidence=B9FH68 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Peptidase cysteine/serine%2C trypsin-like (IPR009003);NIAS_FLcDNA=J023029J15;Expression=AK069656;TENOR=Os05t0145700-01;KEGG=Os05t0145700-01
Chr05	irgsp1_rep	five_prime_UTR	2630242	2630378	.	-	.	Parent=Os05t0145700-01
Chr05	irgsp1_rep	CDS	2629824	2630241	.	-	0	Parent=Os05t0145700-01
Chr05	irgsp1_rep	CDS	2629394	2629537	.	-	2	Parent=Os05t0145700-01
Chr05	irgsp1_rep	CDS	2629160	2629314	.	-	2	Parent=Os05t0145700-01
Chr05	irgsp1_rep	CDS	2628205	2628480	.	-	0	Parent=Os05t0145700-01
Chr05	irgsp1_rep	CDS	2627922	2628092	.	-	0	Parent=Os05t0145700-01
Chr05	irgsp1_rep	three_prime_UTR	2627505	2627921	.	-	.	Parent=Os05t0145700-01
Chr05	irgsp1_rep	three_prime_UTR	2627289	2627381	.	-	.	Parent=Os05t0145700-01
Chr05	irgsp1_rep	three_prime_UTR	2627107	2627184	.	-	.	Parent=Os05t0145700-01
Chr05	irgsp1_rep	three_prime_UTR	2626901	2626988	.	-	.	Parent=Os05t0145700-01
Chr05	irgsp1_rep	three_prime_UTR	2626434	2626496	.	-	.	Parent=Os05t0145700-01
Chr05	irgsp1_rep	three_prime_UTR	2626217	2626285	.	-	.	Parent=Os05t0145700-01
Chr05	irgsp1_rep	three_prime_UTR	2625815	2626051	.	-	.	Parent=Os05t0145700-01
Chr05	irgsp1_rep	mRNA	2632335	2635236	.	+	.	ID=Os05t0145900-01;Name=Os05t0145900-01;Locus_id=Os05g0145900;Note=Hypothetical gene.;Transcript_evidence=AK061196 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=006-209-H04;Expression=AK061196;TENOR=Os05t0145900-01;KEGG=Os05t0145900-01
Chr05	irgsp1_rep	CDS	2632335	2632861	.	+	0	Parent=Os05t0145900-01
Chr05	irgsp1_rep	CDS	2634121	2634217	.	+	1	Parent=Os05t0145900-01
Chr05	irgsp1_rep	three_prime_UTR	2634218	2634431	.	+	.	Parent=Os05t0145900-01
Chr05	irgsp1_rep	three_prime_UTR	2634961	2635236	.	+	.	Parent=Os05t0145900-01
Chr05	irgsp1_rep	mRNA	2632337	2635234	.	+	.	ID=Os05t0145900-02;Name=Os05t0145900-02;Locus_id=Os05g0145900;Note=Hypothetical protein.;Transcript_evidence=AK121187 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023085G14;TENOR=Os05t0145900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	2632337	2632337	.	+	.	Parent=Os05t0145900-02
Chr05	irgsp1_rep	CDS	2632338	2632865	.	+	0	Parent=Os05t0145900-02
Chr05	irgsp1_rep	three_prime_UTR	2632866	2635234	.	+	.	Parent=Os05t0145900-02
Chr05	irgsp1_rep	mRNA	2639014	2649055	.	-	.	ID=Os05t0146100-01;Name=Os05t0146100-01;Locus_id=Os05g0146100;Note=PDZ/DHR/GLGF domain containing protein.;Transcript_evidence=AK106767 (DDBJ%2C Best hit);ORF_evidence=B9FME7 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein binding (GO:0005515);InterPro=PDZ/DHR/GLGF (IPR001478),Peptidase cysteine/serine%2C trypsin-like (IPR009003);NIAS_FLcDNA=002-115-F03;Expression=AK106767;TENOR=Os05t0146100-01;KEGG=Os05t0146100-01
Chr05	irgsp1_rep	five_prime_UTR	2648965	2649055	.	-	.	Parent=Os05t0146100-01
Chr05	irgsp1_rep	CDS	2648388	2648964	.	-	0	Parent=Os05t0146100-01
Chr05	irgsp1_rep	CDS	2647954	2648097	.	-	2	Parent=Os05t0146100-01
Chr05	irgsp1_rep	CDS	2647715	2647869	.	-	2	Parent=Os05t0146100-01
Chr05	irgsp1_rep	CDS	2646475	2646750	.	-	0	Parent=Os05t0146100-01
Chr05	irgsp1_rep	CDS	2646251	2646378	.	-	0	Parent=Os05t0146100-01
Chr05	irgsp1_rep	CDS	2641606	2641723	.	-	1	Parent=Os05t0146100-01
Chr05	irgsp1_rep	CDS	2641383	2641475	.	-	0	Parent=Os05t0146100-01
Chr05	irgsp1_rep	CDS	2641184	2641261	.	-	0	Parent=Os05t0146100-01
Chr05	irgsp1_rep	CDS	2640977	2641064	.	-	0	Parent=Os05t0146100-01
Chr05	irgsp1_rep	CDS	2640168	2640236	.	-	2	Parent=Os05t0146100-01
Chr05	irgsp1_rep	CDS	2639544	2639615	.	-	2	Parent=Os05t0146100-01
Chr05	irgsp1_rep	CDS	2639348	2639394	.	-	2	Parent=Os05t0146100-01
Chr05	irgsp1_rep	three_prime_UTR	2639014	2639347	.	-	.	Parent=Os05t0146100-01
Chr05	irgsp1_rep	mRNA	2672789	2678630	.	-	.	ID=Os05t0146900-00;Name=Os05t0146900-00;Locus_id=Os05g0146900;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6ASR5 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein binding (GO:0005515);InterPro=PDZ/DHR/GLGF (IPR001478),Peptidase cysteine/serine%2C trypsin-like (IPR009003);TENOR=Os05t0146900-00;KEGG=Os05t0146900-00
Chr05	irgsp1_rep	CDS	2678168	2678630	.	-	0	Parent=Os05t0146900-00
Chr05	irgsp1_rep	CDS	2677812	2677955	.	-	2	Parent=Os05t0146900-00
Chr05	irgsp1_rep	CDS	2677585	2677736	.	-	2	Parent=Os05t0146900-00
Chr05	irgsp1_rep	CDS	2676288	2676488	.	-	0	Parent=Os05t0146900-00
Chr05	irgsp1_rep	CDS	2675379	2675498	.	-	0	Parent=Os05t0146900-00
Chr05	irgsp1_rep	CDS	2675192	2675284	.	-	0	Parent=Os05t0146900-00
Chr05	irgsp1_rep	CDS	2675041	2675118	.	-	0	Parent=Os05t0146900-00
Chr05	irgsp1_rep	CDS	2674863	2674950	.	-	0	Parent=Os05t0146900-00
Chr05	irgsp1_rep	CDS	2672789	2672829	.	-	2	Parent=Os05t0146900-00
Chr05	irgsp1_rep	mRNA	2703819	2705345	.	-	.	ID=Os05t0147100-01;Name=Os05t0147100-01;Locus_id=Os05g0147100;Note=Conserved hypothetical protein.;Transcript_evidence=AK109133 (DDBJ%2C Best hit);ORF_evidence=B8AXY3 (UniProt);NIAS_FLcDNA=002-155-D12;TENOR=Os05t0147100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	2705209	2705345	.	-	.	Parent=Os05t0147100-01
Chr05	irgsp1_rep	five_prime_UTR	2704982	2705186	.	-	.	Parent=Os05t0147100-01
Chr05	irgsp1_rep	CDS	2704163	2704981	.	-	0	Parent=Os05t0147100-01
Chr05	irgsp1_rep	three_prime_UTR	2703819	2704162	.	-	.	Parent=Os05t0147100-01
Chr05	irgsp1_rep	mRNA	2704716	2704985	.	+	.	ID=Os05t0147116-00;Name=Os05t0147116-00;Locus_id=Os05g0147116;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os05t0147116-00;KEGG=Os05t0147116-00
Chr05	irgsp1_rep	CDS	2704716	2704985	.	+	0	Parent=Os05t0147116-00
Chr05	irgsp1_rep	mRNA	2706169	2709396	.	-	.	ID=Os05t0147133-00;Name=Os05t0147133-00;Locus_id=Os05g0147133;Note=Similar to predicted protein.;Transcript_evidence=BT034963 (DDBJ);ORF_evidence=B9FMF2 (UniProt);GO=Cellular Component: intracellular (GO:0005622);InterPro=BRCT (IPR001357);TENOR=Os05t0147133-00;KEGG=Os05t0147133-00
Chr05	irgsp1_rep	CDS	2707555	2709396	.	-	0	Parent=Os05t0147133-00
Chr05	irgsp1_rep	CDS	2707186	2707455	.	-	0	Parent=Os05t0147133-00
Chr05	irgsp1_rep	CDS	2707025	2707105	.	-	0	Parent=Os05t0147133-00
Chr05	irgsp1_rep	CDS	2706523	2706628	.	-	0	Parent=Os05t0147133-00
Chr05	irgsp1_rep	CDS	2706366	2706432	.	-	2	Parent=Os05t0147133-00
Chr05	irgsp1_rep	CDS	2706169	2706268	.	-	1	Parent=Os05t0147133-00
Chr05	irgsp1_rep	mRNA	2712383	2713538	.	+	.	ID=Os05t0147150-01;Name=Os05t0147150-01;Locus_id=Os05g0147150;Note=Hypothetical conserved gene.;Transcript_evidence=AK242897 (DDBJ%2C Best hit);ORF_evidence=XP_002873862.1 (RefSeq);NIAS_FLcDNA=J090081G21;TENOR=Os05t0147150-01
Chr05	irgsp1_rep	five_prime_UTR	2712383	2712510	.	+	.	Parent=Os05t0147150-01
Chr05	irgsp1_rep	five_prime_UTR	2712679	2712730	.	+	.	Parent=Os05t0147150-01
Chr05	irgsp1_rep	CDS	2712731	2712737	.	+	0	Parent=Os05t0147150-01
Chr05	irgsp1_rep	CDS	2712856	2712947	.	+	2	Parent=Os05t0147150-01
Chr05	irgsp1_rep	CDS	2713039	2713538	.	+	0	Parent=Os05t0147150-01
Chr05	irgsp1_rep	mRNA	2714257	2716793	.	+	.	ID=Os05t0147200-01;Name=Os05t0147200-01;Locus_id=Os05g0147200;Note=Similar to RNA binding protein.;Transcript_evidence=AK064493 (DDBJ%2C Best hit);ORF_evidence=XP_002873862.1 (RefSeq);GO=Biological Process: RNA metabolic process (GO:0016070),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=MIF4G-like%2C type 3 (IPR003890),Initiation factor eIF-4 gamma%2C MA3 (IPR003891),MIF4-like%2C type 1/2/3 (IPR016021),Armadillo-type fold (IPR016024);NIAS_FLcDNA=002-111-C07;TENOR=Os05t0147200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	2714257	2714257	.	+	.	Parent=Os05t0147200-01
Chr05	irgsp1_rep	CDS	2714258	2714335	.	+	0	Parent=Os05t0147200-01
Chr05	irgsp1_rep	CDS	2714486	2714571	.	+	0	Parent=Os05t0147200-01
Chr05	irgsp1_rep	CDS	2714648	2714730	.	+	1	Parent=Os05t0147200-01
Chr05	irgsp1_rep	CDS	2714875	2715017	.	+	2	Parent=Os05t0147200-01
Chr05	irgsp1_rep	CDS	2715106	2715207	.	+	0	Parent=Os05t0147200-01
Chr05	irgsp1_rep	CDS	2715303	2715596	.	+	0	Parent=Os05t0147200-01
Chr05	irgsp1_rep	CDS	2715679	2715801	.	+	0	Parent=Os05t0147200-01
Chr05	irgsp1_rep	CDS	2716130	2716516	.	+	0	Parent=Os05t0147200-01
Chr05	irgsp1_rep	three_prime_UTR	2716517	2716793	.	+	.	Parent=Os05t0147200-01
Chr05	irgsp1_rep	mRNA	2716976	2718263	.	-	.	ID=Os05t0147300-00;Name=Os05t0147300-00;Locus_id=Os05g0147300;Note=Similar to calcium ion binding protein.;Transcript_evidence=EU960678 (DDBJ);ORF_evidence=NP_001148758.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);TENOR=Os05t0147300-00;KEGG=Os05t0147300-00
Chr05	irgsp1_rep	CDS	2718008	2718263	.	-	0	Parent=Os05t0147300-00
Chr05	irgsp1_rep	CDS	2717509	2717708	.	-	2	Parent=Os05t0147300-00
Chr05	irgsp1_rep	CDS	2717215	2717389	.	-	0	Parent=Os05t0147300-00
Chr05	irgsp1_rep	CDS	2716991	2717109	.	-	2	Parent=Os05t0147300-00
Chr05	irgsp1_rep	three_prime_UTR	2716976	2716990	.	-	.	Parent=Os05t0147300-00
Chr05	irgsp1_rep	mRNA	2718835	2723389	.	-	.	ID=Os05t0147400-01;Name=Os05t0147400-01;Locus_id=Os05g0147400;Note=Similar to T-complex protein 1%2C zeta subunit (TCP-1-zeta) (CCT-zeta) (CCT-zeta-1) (Tcp20) (HTR3) (Acute morphine dependence related protein 2).;Transcript_evidence=AK065883 (DDBJ%2C Best hit);ORF_evidence=B6U118 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: cellular protein metabolic process (GO:0044267),Molecular Function: ATP binding (GO:0005524),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Chaperonin TCP-1%2C conserved site (IPR002194),Chaperonin Cpn60/TCP-1 (IPR002423),T-complex protein 1%2C zeta subunit (IPR012722),Chaperone%2C tailless complex polypeptide 1 (IPR017998);NIAS_FLcDNA=J013048I04;Expression=AK065883;TENOR=Os05t0147400-01;KEGG=Os05t0147400-01
Chr05	irgsp1_rep	five_prime_UTR	2723310	2723389	.	-	.	Parent=Os05t0147400-01
Chr05	irgsp1_rep	CDS	2723176	2723309	.	-	0	Parent=Os05t0147400-01
Chr05	irgsp1_rep	CDS	2722625	2722688	.	-	1	Parent=Os05t0147400-01
Chr05	irgsp1_rep	CDS	2722390	2722525	.	-	0	Parent=Os05t0147400-01
Chr05	irgsp1_rep	CDS	2721790	2721941	.	-	2	Parent=Os05t0147400-01
Chr05	irgsp1_rep	CDS	2721640	2721687	.	-	0	Parent=Os05t0147400-01
Chr05	irgsp1_rep	CDS	2721451	2721543	.	-	0	Parent=Os05t0147400-01
Chr05	irgsp1_rep	CDS	2721093	2721199	.	-	0	Parent=Os05t0147400-01
Chr05	irgsp1_rep	CDS	2720688	2720802	.	-	1	Parent=Os05t0147400-01
Chr05	irgsp1_rep	CDS	2720522	2720608	.	-	0	Parent=Os05t0147400-01
Chr05	irgsp1_rep	CDS	2720137	2720341	.	-	0	Parent=Os05t0147400-01
Chr05	irgsp1_rep	CDS	2719958	2720052	.	-	2	Parent=Os05t0147400-01
Chr05	irgsp1_rep	CDS	2719584	2719652	.	-	0	Parent=Os05t0147400-01
Chr05	irgsp1_rep	CDS	2719392	2719499	.	-	0	Parent=Os05t0147400-01
Chr05	irgsp1_rep	CDS	2719194	2719312	.	-	0	Parent=Os05t0147400-01
Chr05	irgsp1_rep	CDS	2719044	2719119	.	-	1	Parent=Os05t0147400-01
Chr05	irgsp1_rep	three_prime_UTR	2718835	2719043	.	-	.	Parent=Os05t0147400-01
Chr05	irgsp1_rep	mRNA	2718807	2720596	.	-	.	ID=Os05t0147400-02;Name=Os05t0147400-02;Locus_id=Os05g0147400;Note=Similar to T-complex protein 1 subunit zeta.;Transcript_evidence=AK062146 (DDBJ%2C Best hit);ORF_evidence=B6U118 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: cellular protein metabolic process (GO:0044267),Molecular Function: ATP binding (GO:0005524),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Chaperonin Cpn60/TCP-1 (IPR002423),T-complex protein 1%2C zeta subunit (IPR012722);NIAS_FLcDNA=001-045-G12;Expression=AK062146;TENOR=Os05t0147400-02;KEGG=Os05t0147400-02
Chr05	irgsp1_rep	CDS	2720522	2720596	.	-	0	Parent=Os05t0147400-02
Chr05	irgsp1_rep	CDS	2720137	2720341	.	-	0	Parent=Os05t0147400-02
Chr05	irgsp1_rep	CDS	2719958	2720052	.	-	2	Parent=Os05t0147400-02
Chr05	irgsp1_rep	CDS	2719584	2719652	.	-	0	Parent=Os05t0147400-02
Chr05	irgsp1_rep	CDS	2719392	2719499	.	-	0	Parent=Os05t0147400-02
Chr05	irgsp1_rep	CDS	2719194	2719312	.	-	0	Parent=Os05t0147400-02
Chr05	irgsp1_rep	CDS	2719044	2719119	.	-	1	Parent=Os05t0147400-02
Chr05	irgsp1_rep	three_prime_UTR	2718807	2719043	.	-	.	Parent=Os05t0147400-02
Chr05	irgsp1_rep	mRNA	2725695	2733658	.	+	.	ID=Os05t0147500-01;Name=Os05t0147500-01;Locus_id=Os05g0147500;Oryzabase Gene Symbol Synonym(s)=OsDegp6%2C DEGP6%2C OsDeg2;Oryzabase Gene Name Synonym(s)=Deg protease 6%2C DEG PROTEASE 6;Note=Similar to DEGP2 (DEGP PROTEASE 2)%3B serine-type peptidase/ trypsin.;Transcript_evidence=AK065630 (DDBJ%2C Best hit);ORF_evidence=NP_566115.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: catalytic activity (GO:0003824),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: protein binding (GO:0005515);InterPro=Peptidase S1/S6%2C chymotrypsin/Hap (IPR001254),PDZ/DHR/GLGF (IPR001478),Peptidase S1C%2C HrtA/DegP2/Q/S (IPR001940),Peptidase cysteine/serine%2C trypsin-like (IPR009003),Serine endopeptidase DegP2 (IPR015724);NIAS_FLcDNA=J013029I18;Oryzabase=20082;Expression=AK065630;TENOR=Os05t0147500-01;KEGG=Os05t0147500-01
Chr05	irgsp1_rep	five_prime_UTR	2725695	2725808	.	+	.	Parent=Os05t0147500-01
Chr05	irgsp1_rep	CDS	2725809	2725961	.	+	0	Parent=Os05t0147500-01
Chr05	irgsp1_rep	CDS	2726044	2726163	.	+	0	Parent=Os05t0147500-01
Chr05	irgsp1_rep	CDS	2726741	2726794	.	+	0	Parent=Os05t0147500-01
Chr05	irgsp1_rep	CDS	2726980	2727051	.	+	0	Parent=Os05t0147500-01
Chr05	irgsp1_rep	CDS	2727471	2727536	.	+	0	Parent=Os05t0147500-01
Chr05	irgsp1_rep	CDS	2728005	2728049	.	+	0	Parent=Os05t0147500-01
Chr05	irgsp1_rep	CDS	2728724	2728831	.	+	0	Parent=Os05t0147500-01
Chr05	irgsp1_rep	CDS	2729026	2729103	.	+	0	Parent=Os05t0147500-01
Chr05	irgsp1_rep	CDS	2729788	2729854	.	+	0	Parent=Os05t0147500-01
Chr05	irgsp1_rep	CDS	2730019	2730077	.	+	2	Parent=Os05t0147500-01
Chr05	irgsp1_rep	CDS	2730862	2730961	.	+	0	Parent=Os05t0147500-01
Chr05	irgsp1_rep	CDS	2731329	2731408	.	+	2	Parent=Os05t0147500-01
Chr05	irgsp1_rep	CDS	2731529	2731585	.	+	0	Parent=Os05t0147500-01
Chr05	irgsp1_rep	CDS	2731718	2731821	.	+	0	Parent=Os05t0147500-01
Chr05	irgsp1_rep	CDS	2732196	2732283	.	+	1	Parent=Os05t0147500-01
Chr05	irgsp1_rep	CDS	2732368	2732453	.	+	0	Parent=Os05t0147500-01
Chr05	irgsp1_rep	CDS	2732537	2732561	.	+	1	Parent=Os05t0147500-01
Chr05	irgsp1_rep	CDS	2732643	2732714	.	+	0	Parent=Os05t0147500-01
Chr05	irgsp1_rep	CDS	2732805	2732855	.	+	0	Parent=Os05t0147500-01
Chr05	irgsp1_rep	CDS	2732938	2732998	.	+	0	Parent=Os05t0147500-01
Chr05	irgsp1_rep	CDS	2733089	2733333	.	+	2	Parent=Os05t0147500-01
Chr05	irgsp1_rep	three_prime_UTR	2733334	2733658	.	+	.	Parent=Os05t0147500-01
Chr05	irgsp1_rep	mRNA	2725760	2733658	.	+	.	ID=Os05t0147500-02;Name=Os05t0147500-02;Locus_id=Os05g0147500;Oryzabase Gene Symbol Synonym(s)=OsDegp6%2C DEGP6%2C OsDeg2;Oryzabase Gene Name Synonym(s)=Deg protease 6%2C DEG PROTEASE 6;Note=Serine endopeptidase DegP2 domain containing protein.;Transcript_evidence=AK071919 (DDBJ%2C Best hit);ORF_evidence=NP_566115.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: catalytic activity (GO:0003824),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S1/S6%2C chymotrypsin/Hap (IPR001254),Peptidase S1C%2C HrtA/DegP2/Q/S (IPR001940),Peptidase cysteine/serine%2C trypsin-like (IPR009003),Serine endopeptidase DegP2 (IPR015724);NIAS_FLcDNA=J013072E14;Oryzabase=20082;Expression=AK071919;TENOR=Os05t0147500-02;KEGG=Os05t0147500-02 (EC:3.4.21.-)
Chr05	irgsp1_rep	five_prime_UTR	2725760	2725808	.	+	.	Parent=Os05t0147500-02
Chr05	irgsp1_rep	CDS	2725809	2725961	.	+	0	Parent=Os05t0147500-02
Chr05	irgsp1_rep	CDS	2726044	2726163	.	+	0	Parent=Os05t0147500-02
Chr05	irgsp1_rep	CDS	2726741	2726794	.	+	0	Parent=Os05t0147500-02
Chr05	irgsp1_rep	CDS	2726980	2727051	.	+	0	Parent=Os05t0147500-02
Chr05	irgsp1_rep	CDS	2727471	2727536	.	+	0	Parent=Os05t0147500-02
Chr05	irgsp1_rep	CDS	2728005	2728049	.	+	0	Parent=Os05t0147500-02
Chr05	irgsp1_rep	CDS	2728724	2728831	.	+	0	Parent=Os05t0147500-02
Chr05	irgsp1_rep	CDS	2729026	2729103	.	+	0	Parent=Os05t0147500-02
Chr05	irgsp1_rep	CDS	2729788	2729854	.	+	0	Parent=Os05t0147500-02
Chr05	irgsp1_rep	CDS	2730019	2730077	.	+	2	Parent=Os05t0147500-02
Chr05	irgsp1_rep	CDS	2730870	2730878	.	+	0	Parent=Os05t0147500-02
Chr05	irgsp1_rep	three_prime_UTR	2730879	2730961	.	+	.	Parent=Os05t0147500-02
Chr05	irgsp1_rep	three_prime_UTR	2731329	2731408	.	+	.	Parent=Os05t0147500-02
Chr05	irgsp1_rep	three_prime_UTR	2731529	2731585	.	+	.	Parent=Os05t0147500-02
Chr05	irgsp1_rep	three_prime_UTR	2731718	2731821	.	+	.	Parent=Os05t0147500-02
Chr05	irgsp1_rep	three_prime_UTR	2732196	2732283	.	+	.	Parent=Os05t0147500-02
Chr05	irgsp1_rep	three_prime_UTR	2732368	2732453	.	+	.	Parent=Os05t0147500-02
Chr05	irgsp1_rep	three_prime_UTR	2732537	2732561	.	+	.	Parent=Os05t0147500-02
Chr05	irgsp1_rep	three_prime_UTR	2732643	2732714	.	+	.	Parent=Os05t0147500-02
Chr05	irgsp1_rep	three_prime_UTR	2732805	2732855	.	+	.	Parent=Os05t0147500-02
Chr05	irgsp1_rep	three_prime_UTR	2732938	2732998	.	+	.	Parent=Os05t0147500-02
Chr05	irgsp1_rep	three_prime_UTR	2733089	2733658	.	+	.	Parent=Os05t0147500-02
Chr05	irgsp1_rep	mRNA	2728026	2733727	.	+	.	ID=Os05t0147500-03;Name=Os05t0147500-03;Locus_id=Os05g0147500;Oryzabase Gene Symbol Synonym(s)=OsDegp6%2C DEGP6%2C OsDeg2;Oryzabase Gene Name Synonym(s)=Deg protease 6%2C DEG PROTEASE 6;Note=Similar to DEGP2 (DEGP PROTEASE 2)%3B serine-type peptidase/ trypsin.;Transcript_evidence=AK059221 (DDBJ%2C Best hit);ORF_evidence=NP_566115.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Peptidase cysteine/serine%2C trypsin-like (IPR009003),Serine endopeptidase DegP2 (IPR015724);NIAS_FLcDNA=001-024-D03;Oryzabase=20082;Expression=AK059221;TENOR=Os05t0147500-03;KEGG=Os05t0147500-03
Chr05	irgsp1_rep	CDS	2728026	2728049	.	+	0	Parent=Os05t0147500-03
Chr05	irgsp1_rep	CDS	2728724	2728831	.	+	0	Parent=Os05t0147500-03
Chr05	irgsp1_rep	CDS	2729026	2729103	.	+	0	Parent=Os05t0147500-03
Chr05	irgsp1_rep	CDS	2729783	2729848	.	+	0	Parent=Os05t0147500-03
Chr05	irgsp1_rep	three_prime_UTR	2729849	2729854	.	+	.	Parent=Os05t0147500-03
Chr05	irgsp1_rep	three_prime_UTR	2730019	2730077	.	+	.	Parent=Os05t0147500-03
Chr05	irgsp1_rep	three_prime_UTR	2730862	2730961	.	+	.	Parent=Os05t0147500-03
Chr05	irgsp1_rep	three_prime_UTR	2731329	2731408	.	+	.	Parent=Os05t0147500-03
Chr05	irgsp1_rep	three_prime_UTR	2731529	2731585	.	+	.	Parent=Os05t0147500-03
Chr05	irgsp1_rep	three_prime_UTR	2731718	2731821	.	+	.	Parent=Os05t0147500-03
Chr05	irgsp1_rep	three_prime_UTR	2732196	2732283	.	+	.	Parent=Os05t0147500-03
Chr05	irgsp1_rep	three_prime_UTR	2732368	2732453	.	+	.	Parent=Os05t0147500-03
Chr05	irgsp1_rep	three_prime_UTR	2732537	2732561	.	+	.	Parent=Os05t0147500-03
Chr05	irgsp1_rep	three_prime_UTR	2732643	2732714	.	+	.	Parent=Os05t0147500-03
Chr05	irgsp1_rep	three_prime_UTR	2732805	2732855	.	+	.	Parent=Os05t0147500-03
Chr05	irgsp1_rep	three_prime_UTR	2732938	2732998	.	+	.	Parent=Os05t0147500-03
Chr05	irgsp1_rep	three_prime_UTR	2733089	2733727	.	+	.	Parent=Os05t0147500-03
Chr05	irgsp1_rep	mRNA	2734331	2736117	.	-	.	ID=Os05t0147550-00;Name=Os05t0147550-00;Locus_id=Os05g0147550;Note=Hypothetical gene.;Transcript_evidence=BT067877 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0147550-00;KEGG=Os05t0147550-00
Chr05	irgsp1_rep	five_prime_UTR	2734805	2736117	.	-	.	Parent=Os05t0147550-00
Chr05	irgsp1_rep	CDS	2734331	2734804	.	-	0	Parent=Os05t0147550-00
Chr05	irgsp1_rep	mRNA	2735367	2736996	.	+	.	ID=Os05t0147600-01;Name=Os05t0147600-01;Locus_id=Os05g0147600;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK111304 (DDBJ%2C Best hit);ORF_evidence=B9FH71 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-181-B07;Expression=AK111304;TENOR=Os05t0147600-01;KEGG=Os05t0147600-01
Chr05	irgsp1_rep	five_prime_UTR	2735367	2735368	.	+	.	Parent=Os05t0147600-01
Chr05	irgsp1_rep	CDS	2735369	2736034	.	+	0	Parent=Os05t0147600-01
Chr05	irgsp1_rep	three_prime_UTR	2736035	2736100	.	+	.	Parent=Os05t0147600-01
Chr05	irgsp1_rep	three_prime_UTR	2736577	2736996	.	+	.	Parent=Os05t0147600-01
Chr05	irgsp1_rep	mRNA	2737489	2738683	.	+	.	ID=Os05t0147650-00;Name=Os05t0147650-00;Locus_id=Os05g0147650;Note=Hypothetical protein.;Transcript_evidence=tplb0036e05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0147650-00
Chr05	irgsp1_rep	five_prime_UTR	2737489	2738082	.	+	.	Parent=Os05t0147650-00
Chr05	irgsp1_rep	CDS	2738083	2738683	.	+	0	Parent=Os05t0147650-00
Chr05	irgsp1_rep	mRNA	2737975	2738723	.	-	.	ID=Os05t0147700-00;Name=Os05t0147700-00;Locus_id=Os05g0147700;Oryzabase Gene Symbol Synonym(s)=OsFbox247%2C Os_F0660;Oryzabase Gene Name Synonym(s)=F-box protein 247;Note=Hypothetical conserved gene.;Transcript_evidence=CT836344 (DDBJ%2C Best hit);ORF_evidence=NP_001054644.2 (RefSeq);InterPro=F-box domain%2C Skp2-like (IPR022364);Oryzabase=17032;TENOR=Os05t0147700-00
Chr05	irgsp1_rep	five_prime_UTR	2738664	2738723	.	-	.	Parent=Os05t0147700-00
Chr05	irgsp1_rep	CDS	2738401	2738663	.	-	0	Parent=Os05t0147700-00
Chr05	irgsp1_rep	CDS	2737975	2738394	.	-	1	Parent=Os05t0147700-00
Chr05	irgsp1_rep	mRNA	2739707	2741067	.	-	.	ID=Os05t0147800-01;Name=Os05t0147800-01;Locus_id=Os05g0147800;Note=Conserved hypothetical protein.;Transcript_evidence=AK106485 (DDBJ%2C Best hit);ORF_evidence=B8AY71 (UniProt);NIAS_FLcDNA=002-104-H02;Expression=AK106485;TENOR=Os05t0147800-01;KEGG=Os05t0147800-01
Chr05	irgsp1_rep	five_prime_UTR	2740977	2741067	.	-	.	Parent=Os05t0147800-01
Chr05	irgsp1_rep	CDS	2739801	2740976	.	-	0	Parent=Os05t0147800-01
Chr05	irgsp1_rep	three_prime_UTR	2739707	2739800	.	-	.	Parent=Os05t0147800-01
Chr05	irgsp1_rep	mRNA	2739805	2742367	.	+	.	ID=Os05t0147901-00;Name=Os05t0147901-00;Locus_id=Os05g0147901;Note=Hypothetical protein.;Transcript_evidence=tplb0036e05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0147901-00
Chr05	irgsp1_rep	five_prime_UTR	2739805	2740004	.	+	.	Parent=Os05t0147901-00
Chr05	irgsp1_rep	five_prime_UTR	2740057	2740602	.	+	.	Parent=Os05t0147901-00
Chr05	irgsp1_rep	CDS	2740603	2740928	.	+	0	Parent=Os05t0147901-00
Chr05	irgsp1_rep	CDS	2742155	2742367	.	+	1	Parent=Os05t0147901-00
Chr05	irgsp1_rep	mRNA	2749723	2752895	.	-	.	ID=Os05t0148000-01;Name=Os05t0148000-01;Locus_id=Os05g0148000;Note=Hypothetical conserved gene.;Transcript_evidence=AK066256 (DDBJ%2C Best hit);ORF_evidence=Q6ASQ6 (UniProt);NIAS_FLcDNA=J013057C10;Expression=AK066256;TENOR=Os05t0148000-01;KEGG=Os05t0148000-01
Chr05	irgsp1_rep	five_prime_UTR	2752409	2752895	.	-	.	Parent=Os05t0148000-01
Chr05	irgsp1_rep	five_prime_UTR	2752257	2752314	.	-	.	Parent=Os05t0148000-01
Chr05	irgsp1_rep	CDS	2752140	2752256	.	-	0	Parent=Os05t0148000-01
Chr05	irgsp1_rep	three_prime_UTR	2752134	2752139	.	-	.	Parent=Os05t0148000-01
Chr05	irgsp1_rep	three_prime_UTR	2751591	2751838	.	-	.	Parent=Os05t0148000-01
Chr05	irgsp1_rep	three_prime_UTR	2750822	2750873	.	-	.	Parent=Os05t0148000-01
Chr05	irgsp1_rep	three_prime_UTR	2749723	2749931	.	-	.	Parent=Os05t0148000-01
Chr05	irgsp1_rep	mRNA	2748512	2752887	.	-	.	ID=Os05t0148000-02;Name=Os05t0148000-02;Locus_id=Os05g0148000;Note=Conserved hypothetical protein.;Transcript_evidence=AK066037 (DDBJ%2C Best hit);ORF_evidence=NP_001176559.1 (RefSeq);NIAS_FLcDNA=J013045L24;TENOR=Os05t0148000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	2752409	2752887	.	-	.	Parent=Os05t0148000-02
Chr05	irgsp1_rep	five_prime_UTR	2752134	2752314	.	-	.	Parent=Os05t0148000-02
Chr05	irgsp1_rep	five_prime_UTR	2751888	2751985	.	-	.	Parent=Os05t0148000-02
Chr05	irgsp1_rep	five_prime_UTR	2751591	2751701	.	-	.	Parent=Os05t0148000-02
Chr05	irgsp1_rep	five_prime_UTR	2751224	2751498	.	-	.	Parent=Os05t0148000-02
Chr05	irgsp1_rep	CDS	2750969	2751223	.	-	0	Parent=Os05t0148000-02
Chr05	irgsp1_rep	three_prime_UTR	2749859	2750968	.	-	.	Parent=Os05t0148000-02
Chr05	irgsp1_rep	three_prime_UTR	2749489	2749555	.	-	.	Parent=Os05t0148000-02
Chr05	irgsp1_rep	three_prime_UTR	2749087	2749177	.	-	.	Parent=Os05t0148000-02
Chr05	irgsp1_rep	three_prime_UTR	2748512	2748731	.	-	.	Parent=Os05t0148000-02
Chr05	irgsp1_rep	mRNA	2763255	2764819	.	+	.	ID=Os05t0148300-01;Name=Os05t0148300-01;Locus_id=Os05g0148300;Note=Ribosomal protein S27/S33%2C mitochondrial domain containing protein.;Transcript_evidence=AK062421 (DDBJ%2C Best hit);ORF_evidence=A2Y0E1 (UniProt);InterPro=Ribosomal protein S27/S33%2C mitochondrial (IPR013219);NIAS_FLcDNA=001-102-G06;Expression=AK062421;TENOR=Os05t0148300-01;KEGG=Os05t0148300-01
Chr05	irgsp1_rep	five_prime_UTR	2763255	2763326	.	+	.	Parent=Os05t0148300-01
Chr05	irgsp1_rep	CDS	2763327	2763550	.	+	0	Parent=Os05t0148300-01
Chr05	irgsp1_rep	CDS	2764540	2764630	.	+	1	Parent=Os05t0148300-01
Chr05	irgsp1_rep	three_prime_UTR	2764631	2764819	.	+	.	Parent=Os05t0148300-01
Chr05	irgsp1_rep	mRNA	2765114	2765945	.	+	.	ID=Os05t0148400-01;Name=Os05t0148400-01;Locus_id=Os05g0148400;Note=Hypothetical protein.;Transcript_evidence=AK108236 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-140-G08;Expression=AK108236;TENOR=Os05t0148400-01;KEGG=Os05t0148400-01
Chr05	irgsp1_rep	five_prime_UTR	2765114	2765349	.	+	.	Parent=Os05t0148400-01
Chr05	irgsp1_rep	CDS	2765350	2765592	.	+	0	Parent=Os05t0148400-01
Chr05	irgsp1_rep	three_prime_UTR	2765593	2765945	.	+	.	Parent=Os05t0148400-01
Chr05	irgsp1_rep	mRNA	2767388	2775730	.	-	.	ID=Os05t0148500-01;Name=Os05t0148500-01;Locus_id=Os05g0148500;Note=Hypothetical conserved gene.;Transcript_evidence=AK287699 (DDBJ%2C Best hit);ORF_evidence=NP_001054649.1 (RefSeq);NIAS_FLcDNA=J065130E07;TENOR=Os05t0148500-01;KEGG=Os05t0148500-01
Chr05	irgsp1_rep	five_prime_UTR	2775575	2775730	.	-	.	Parent=Os05t0148500-01
Chr05	irgsp1_rep	CDS	2774975	2775574	.	-	0	Parent=Os05t0148500-01
Chr05	irgsp1_rep	three_prime_UTR	2774707	2774974	.	-	.	Parent=Os05t0148500-01
Chr05	irgsp1_rep	three_prime_UTR	2772980	2773043	.	-	.	Parent=Os05t0148500-01
Chr05	irgsp1_rep	three_prime_UTR	2772637	2772678	.	-	.	Parent=Os05t0148500-01
Chr05	irgsp1_rep	three_prime_UTR	2772509	2772562	.	-	.	Parent=Os05t0148500-01
Chr05	irgsp1_rep	three_prime_UTR	2772370	2772419	.	-	.	Parent=Os05t0148500-01
Chr05	irgsp1_rep	three_prime_UTR	2772258	2772285	.	-	.	Parent=Os05t0148500-01
Chr05	irgsp1_rep	three_prime_UTR	2771992	2772069	.	-	.	Parent=Os05t0148500-01
Chr05	irgsp1_rep	three_prime_UTR	2771791	2771898	.	-	.	Parent=Os05t0148500-01
Chr05	irgsp1_rep	three_prime_UTR	2770967	2771703	.	-	.	Parent=Os05t0148500-01
Chr05	irgsp1_rep	three_prime_UTR	2769588	2769715	.	-	.	Parent=Os05t0148500-01
Chr05	irgsp1_rep	three_prime_UTR	2768837	2768894	.	-	.	Parent=Os05t0148500-01
Chr05	irgsp1_rep	three_prime_UTR	2768199	2768237	.	-	.	Parent=Os05t0148500-01
Chr05	irgsp1_rep	three_prime_UTR	2768066	2768106	.	-	.	Parent=Os05t0148500-01
Chr05	irgsp1_rep	three_prime_UTR	2767827	2767953	.	-	.	Parent=Os05t0148500-01
Chr05	irgsp1_rep	three_prime_UTR	2767388	2767649	.	-	.	Parent=Os05t0148500-01
Chr05	irgsp1_rep	mRNA	2777390	2783546	.	-	.	ID=Os05t0148600-01;Name=Os05t0148600-01;Locus_id=Os05g0148600;RAP-DB Gene Symbol Synonym(s)=OsNHX3;RAP-DB Gene Name Synonym(s)=Na<sup>+</sup>/H<sup>+</sup> antiporter 3;CGSNL Gene Symbol=NHX3;CGSNL Gene Name=NA+/H+ ANTIPORTER 3;Oryzabase Gene Symbol Synonym(s)=OsNHX3%2C OsNHX2%2C NHX2;Oryzabase Gene Name Synonym(s)=Na+/H+ antiporter 3%2C NHX-type antiporter 3;Note=Na<sup>+</sup>/H<sup>+</sup> antiporter%2C Salt stress response;Transcript_evidence=AK104336,AK066168;ORF_evidence=Q6UUW2;GO=Biological Process: cation transport (GO:0006812),Biological Process: sodium ion transport (GO:0006814),Biological Process: regulation of pH (GO:0006885),Biological Process: transmembrane transport (GO:0055085),Molecular Function: solute:proton antiporter activity (GO:0015299),Molecular Function: sodium:proton antiporter activity (GO:0015385),Cellular Component: integral component of membrane (GO:0016021);InterPro=Sodium/solute  symporter  superfamily (IPR038770),Na+/H+ exchanger (IPR004709),Cation/H+ exchanger (IPR006153);NIAS_FLcDNA=001-033-C09,J013055J22;Manual Curation=July 9%2C 2019;Literature_PMID=20963607;Oryzabase=10936;TENOR=Os05t0148600-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	2783400	2783546	.	-	.	Parent=Os05t0148600-01
Chr05	irgsp1_rep	five_prime_UTR	2783009	2783048	.	-	.	Parent=Os05t0148600-01
Chr05	irgsp1_rep	CDS	2782835	2783008	.	-	0	Parent=Os05t0148600-01
Chr05	irgsp1_rep	CDS	2782616	2782734	.	-	0	Parent=Os05t0148600-01
Chr05	irgsp1_rep	CDS	2781639	2781736	.	-	1	Parent=Os05t0148600-01
Chr05	irgsp1_rep	CDS	2781094	2781153	.	-	2	Parent=Os05t0148600-01
Chr05	irgsp1_rep	CDS	2780920	2780966	.	-	2	Parent=Os05t0148600-01
Chr05	irgsp1_rep	CDS	2780643	2780837	.	-	0	Parent=Os05t0148600-01
Chr05	irgsp1_rep	CDS	2780471	2780517	.	-	0	Parent=Os05t0148600-01
Chr05	irgsp1_rep	CDS	2780312	2780378	.	-	1	Parent=Os05t0148600-01
Chr05	irgsp1_rep	CDS	2779721	2779821	.	-	0	Parent=Os05t0148600-01
Chr05	irgsp1_rep	CDS	2779515	2779616	.	-	1	Parent=Os05t0148600-01
Chr05	irgsp1_rep	CDS	2778747	2778885	.	-	1	Parent=Os05t0148600-01
Chr05	irgsp1_rep	CDS	2778582	2778644	.	-	0	Parent=Os05t0148600-01
Chr05	irgsp1_rep	CDS	2778391	2778474	.	-	0	Parent=Os05t0148600-01
Chr05	irgsp1_rep	CDS	2777672	2778010	.	-	0	Parent=Os05t0148600-01
Chr05	irgsp1_rep	three_prime_UTR	2777390	2777671	.	-	.	Parent=Os05t0148600-01
Chr05	irgsp1_rep	mRNA	2786118	2791149	.	+	.	ID=Os05t0148700-01;Name=Os05t0148700-01;Locus_id=Os05g0148700;CGSNL Gene Symbol=PSE;CGSNL Gene Name=PREMATURE SENESCENCE;Oryzabase Gene Symbol Synonym(s)=Pse (t)%2C Pse;Oryzabase Gene Name Synonym(s)=premature senescence;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=AK069108 (DDBJ%2C Best hit);ORF_evidence=Q5JCT1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023008A06;Oryzabase=23618;Expression=AK069108;TENOR=Os05t0148700-01;KEGG=Os05t0148700-01
Chr05	irgsp1_rep	five_prime_UTR	2786118	2786211	.	+	.	Parent=Os05t0148700-01
Chr05	irgsp1_rep	five_prime_UTR	2786999	2787106	.	+	.	Parent=Os05t0148700-01
Chr05	irgsp1_rep	CDS	2787107	2787423	.	+	0	Parent=Os05t0148700-01
Chr05	irgsp1_rep	CDS	2787686	2787856	.	+	1	Parent=Os05t0148700-01
Chr05	irgsp1_rep	CDS	2787952	2788025	.	+	1	Parent=Os05t0148700-01
Chr05	irgsp1_rep	CDS	2788111	2788187	.	+	2	Parent=Os05t0148700-01
Chr05	irgsp1_rep	CDS	2788295	2788366	.	+	0	Parent=Os05t0148700-01
Chr05	irgsp1_rep	CDS	2788556	2788624	.	+	0	Parent=Os05t0148700-01
Chr05	irgsp1_rep	CDS	2789170	2789216	.	+	0	Parent=Os05t0148700-01
Chr05	irgsp1_rep	CDS	2789346	2789469	.	+	1	Parent=Os05t0148700-01
Chr05	irgsp1_rep	CDS	2789545	2789613	.	+	0	Parent=Os05t0148700-01
Chr05	irgsp1_rep	CDS	2789694	2789797	.	+	0	Parent=Os05t0148700-01
Chr05	irgsp1_rep	CDS	2790223	2790298	.	+	1	Parent=Os05t0148700-01
Chr05	irgsp1_rep	CDS	2790672	2790845	.	+	0	Parent=Os05t0148700-01
Chr05	irgsp1_rep	three_prime_UTR	2790846	2791149	.	+	.	Parent=Os05t0148700-01
Chr05	irgsp1_rep	mRNA	2787309	2791083	.	+	.	ID=Os05t0148700-02;Name=Os05t0148700-02;Locus_id=Os05g0148700;CGSNL Gene Symbol=PSE;CGSNL Gene Name=PREMATURE SENESCENCE;Oryzabase Gene Symbol Synonym(s)=Pse (t)%2C Pse;Oryzabase Gene Name Synonym(s)=premature senescence;Note=Similar to OSA15 protein.;Transcript_evidence=AK104683 (DDBJ%2C Best hit);ORF_evidence=Q5JCT1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=001-036-A07;Oryzabase=23618;Expression=AK104683;TENOR=Os05t0148700-02;KEGG=Os05t0148700-02
Chr05	irgsp1_rep	five_prime_UTR	2787309	2787310	.	+	.	Parent=Os05t0148700-02
Chr05	irgsp1_rep	CDS	2787311	2787423	.	+	0	Parent=Os05t0148700-02
Chr05	irgsp1_rep	CDS	2787686	2787856	.	+	1	Parent=Os05t0148700-02
Chr05	irgsp1_rep	CDS	2787952	2788025	.	+	1	Parent=Os05t0148700-02
Chr05	irgsp1_rep	CDS	2788111	2788187	.	+	2	Parent=Os05t0148700-02
Chr05	irgsp1_rep	CDS	2788295	2788366	.	+	0	Parent=Os05t0148700-02
Chr05	irgsp1_rep	CDS	2788556	2788624	.	+	0	Parent=Os05t0148700-02
Chr05	irgsp1_rep	CDS	2789170	2789216	.	+	0	Parent=Os05t0148700-02
Chr05	irgsp1_rep	CDS	2789346	2789469	.	+	1	Parent=Os05t0148700-02
Chr05	irgsp1_rep	CDS	2789545	2789613	.	+	0	Parent=Os05t0148700-02
Chr05	irgsp1_rep	CDS	2789694	2789797	.	+	0	Parent=Os05t0148700-02
Chr05	irgsp1_rep	CDS	2790223	2790298	.	+	1	Parent=Os05t0148700-02
Chr05	irgsp1_rep	CDS	2790672	2790845	.	+	0	Parent=Os05t0148700-02
Chr05	irgsp1_rep	three_prime_UTR	2790846	2791083	.	+	.	Parent=Os05t0148700-02
Chr05	irgsp1_rep	mRNA	2793637	2794738	.	+	.	ID=Os05t0148800-00;Name=Os05t0148800-00;Locus_id=Os05g0148800;Note=Hypothetical conserved gene.;Transcript_evidence=CT836410 (DDBJ%2C Best hit);ORF_evidence=B9FH78 (UniProt);TENOR=Os05t0148800-00;KEGG=Os05t0148800-00
Chr05	irgsp1_rep	five_prime_UTR	2793637	2793670	.	+	.	Parent=Os05t0148800-00
Chr05	irgsp1_rep	CDS	2793671	2793907	.	+	0	Parent=Os05t0148800-00
Chr05	irgsp1_rep	three_prime_UTR	2793908	2794738	.	+	.	Parent=Os05t0148800-00
Chr05	irgsp1_rep	mRNA	2796435	2797546	.	+	.	ID=Os05t0148900-01;Name=Os05t0148900-01;Locus_id=Os05g0148900;CGSNL Gene Symbol=GSTF17;CGSNL Gene Name=PHI GLUTATHIONE S-TRANSFERASE 17;Oryzabase Gene Symbol Synonym(s)=OsGSTF17;Note=Similar to Glutathione-S-transferase 19E50.;Transcript_evidence=AK120912 (DDBJ%2C Best hit);ORF_evidence=Q8LGN5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=J023034E09;Oryzabase=9519;Expression=AK120912;TENOR=Os05t0148900-01;KEGG=Os05t0148900-01
Chr05	irgsp1_rep	five_prime_UTR	2796435	2796492	.	+	.	Parent=Os05t0148900-01
Chr05	irgsp1_rep	CDS	2796493	2796639	.	+	0	Parent=Os05t0148900-01
Chr05	irgsp1_rep	CDS	2796857	2796905	.	+	0	Parent=Os05t0148900-01
Chr05	irgsp1_rep	CDS	2797101	2797504	.	+	2	Parent=Os05t0148900-01
Chr05	irgsp1_rep	three_prime_UTR	2797505	2797546	.	+	.	Parent=Os05t0148900-01
Chr05	irgsp1_rep	mRNA	2796448	2797487	.	-	.	ID=Os05t0148950-00;Name=Os05t0148950-00;Locus_id=Os05g0148950;Note=Hypothetical protein.;Transcript_evidence=BT009482 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0148950-00
Chr05	irgsp1_rep	five_prime_UTR	2797487	2797487	.	-	.	Parent=Os05t0148950-00
Chr05	irgsp1_rep	CDS	2797154	2797486	.	-	0	Parent=Os05t0148950-00
Chr05	irgsp1_rep	three_prime_UTR	2797119	2797153	.	-	.	Parent=Os05t0148950-00
Chr05	irgsp1_rep	three_prime_UTR	2796448	2796710	.	-	.	Parent=Os05t0148950-00
Chr05	irgsp1_rep	mRNA	2804318	2804985	.	+	.	ID=Os05t0149000-01;Name=Os05t0149000-01;Locus_id=Os05g0149000;Oryzabase Gene Symbol Synonym(s)=OsSTA139;Note=Pectinesterase inhibitor domain containing protein.;Transcript_evidence=AK111047 (DDBJ%2C Best hit);ORF_evidence=A2Y0E8 (UniProt);GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);NIAS_FLcDNA=002-175-C01;Oryzabase=19428;Expression=AK111047;TENOR=Os05t0149000-01;KEGG=Os05t0149000-01
Chr05	irgsp1_rep	five_prime_UTR	2804318	2804344	.	+	.	Parent=Os05t0149000-01
Chr05	irgsp1_rep	CDS	2804345	2804896	.	+	0	Parent=Os05t0149000-01
Chr05	irgsp1_rep	three_prime_UTR	2804897	2804985	.	+	.	Parent=Os05t0149000-01
Chr05	irgsp1_rep	mRNA	2806170	2807237	.	-	.	ID=Os05t0149100-01;Name=Os05t0149100-01;Locus_id=Os05g0149100;Note=C2 calcium-dependent membrane targeting domain containing protein.;Transcript_evidence=AK107944 (DDBJ%2C Best hit);ORF_evidence=NP_001149536.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973);NIAS_FLcDNA=002-135-B04;Expression=AK107944;TENOR=Os05t0149100-01;KEGG=Os05t0149100-01
Chr05	irgsp1_rep	five_prime_UTR	2807169	2807237	.	-	.	Parent=Os05t0149100-01
Chr05	irgsp1_rep	CDS	2806329	2807168	.	-	0	Parent=Os05t0149100-01
Chr05	irgsp1_rep	three_prime_UTR	2806170	2806328	.	-	.	Parent=Os05t0149100-01
Chr05	irgsp1_rep	mRNA	2810610	2812294	.	+	.	ID=Os05t0149200-01;Name=Os05t0149200-01;Locus_id=Os05g0149200;Note=PWWP domain containing protein.;Transcript_evidence=AK289231 (DDBJ%2C Best hit);ORF_evidence=NP_001054655.2 (RefSeq);InterPro=PWWP (IPR000313);NIAS_FLcDNA=J100070D21;TENOR=Os05t0149200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	2810610	2810649	.	+	.	Parent=Os05t0149200-01
Chr05	irgsp1_rep	CDS	2810650	2811774	.	+	0	Parent=Os05t0149200-01
Chr05	irgsp1_rep	three_prime_UTR	2811775	2812294	.	+	.	Parent=Os05t0149200-01
Chr05	irgsp1_rep	mRNA	2815646	2817965	.	-	.	ID=Os05t0149251-00;Name=Os05t0149251-00;Locus_id=Os05g0149251;Note=Hypothetical protein.;Transcript_evidence=tplb0046g06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0149251-00
Chr05	irgsp1_rep	five_prime_UTR	2817736	2817965	.	-	.	Parent=Os05t0149251-00
Chr05	irgsp1_rep	CDS	2816266	2817735	.	-	0	Parent=Os05t0149251-00
Chr05	irgsp1_rep	three_prime_UTR	2815646	2816265	.	-	.	Parent=Os05t0149251-00
Chr05	irgsp1_rep	mRNA	2819814	2821347	.	-	.	ID=Os05t0149300-00;Name=Os05t0149300-00;Locus_id=Os05g0149300;Note=Similar to 1-aminocyclopropane-1-carboxylate oxidase.;Transcript_evidence=BT087584 (DDBJ);ORF_evidence=O81606 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);TENOR=Os05t0149300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	2821196	2821347	.	-	.	Parent=Os05t0149300-00
Chr05	irgsp1_rep	five_prime_UTR	2820591	2820692	.	-	.	Parent=Os05t0149300-00
Chr05	irgsp1_rep	CDS	2820030	2820590	.	-	0	Parent=Os05t0149300-00
Chr05	irgsp1_rep	three_prime_UTR	2819814	2820029	.	-	.	Parent=Os05t0149300-00
Chr05	irgsp1_rep	mRNA	2825324	2826912	.	+	.	ID=Os05t0149400-01;Name=Os05t0149400-01;Locus_id=Os05g0149400;RAP-DB Gene Symbol Synonym(s)=ACO5%2C OsACO5;RAP-DB Gene Name Synonym(s)=AMINOCYCLOPROPANE-1-CARBOXYLIC ACID OXIDASE 5%2C ACC oxidase 5;CGSNL Gene Symbol=ACO5;CGSNL Gene Name=AMINOCYCLOPROPANE-1-CARBOXYLIC ACID OXIDASE 5;Oryzabase Gene Symbol Synonym(s)=OsACO5%2C 2-ODD14%2C Os2-ODD14%2C 2ODD14%2C Os2ODD14;Oryzabase Gene Name Synonym(s)=ACC oxidase 5%2C 2-oxoglutarate-dependent dioxygenase 14;Note=ACC oxidase%2C Ethylene biosynthesis;Transcript_evidence=AK061064;ORF_evidence=Q65XE5;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Non-haem dioxygenase N-terminal domain (IPR026992),Isopenicillin N synthase-like (IPR027443),Oxoglutarate/iron-dependent dioxygenase (IPR005123);NIAS_FLcDNA=006-206-B08;Manual Curation=November 27%2C 2009;Literature_PMID=17012402;Oryzabase=9075;Expression=AK061064;TENOR=Os05t0149400-01;KEGG=Os05t0149400-01 (EC:1.14.17.4)
Chr05	irgsp1_rep	five_prime_UTR	2825324	2825445	.	+	.	Parent=Os05t0149400-01
Chr05	irgsp1_rep	CDS	2825446	2825553	.	+	0	Parent=Os05t0149400-01
Chr05	irgsp1_rep	CDS	2825829	2826647	.	+	0	Parent=Os05t0149400-01
Chr05	irgsp1_rep	three_prime_UTR	2826648	2826912	.	+	.	Parent=Os05t0149400-01
Chr05	irgsp1_rep	mRNA	2825824	2826629	.	-	.	ID=Os05t0149450-00;Name=Os05t0149450-00;Locus_id=Os05g0149450;Note=Non-protein coding transcript.;Transcript_evidence=tplb0008n13 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os05t0149450-00
Chr05	irgsp1_rep	exon	2825824	2826629	.	-	.	Parent=Os05t0149450-00
Chr05	irgsp1_rep	mRNA	2830795	2833764	.	+	.	ID=Os05t0149500-01;Name=Os05t0149500-01;Locus_id=Os05g0149500;Note=Similar to lipopolysaccharide-modifying protein.;Transcript_evidence=AK064684 (DDBJ%2C Best hit);ORF_evidence=NP_001151574.1 (RefSeq);InterPro=Lipopolysaccharide-modifying protein (IPR006598),Protein of unknown function DUF821%2C CAP10-like (IPR008539);NIAS_FLcDNA=002-116-B01;TENOR=Os05t0149500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	2830795	2830796	.	+	.	Parent=Os05t0149500-01
Chr05	irgsp1_rep	CDS	2830797	2830857	.	+	0	Parent=Os05t0149500-01
Chr05	irgsp1_rep	CDS	2831699	2831777	.	+	2	Parent=Os05t0149500-01
Chr05	irgsp1_rep	CDS	2832549	2832738	.	+	1	Parent=Os05t0149500-01
Chr05	irgsp1_rep	CDS	2832967	2833031	.	+	0	Parent=Os05t0149500-01
Chr05	irgsp1_rep	CDS	2833116	2833611	.	+	1	Parent=Os05t0149500-01
Chr05	irgsp1_rep	three_prime_UTR	2833612	2833764	.	+	.	Parent=Os05t0149500-01
Chr05	irgsp1_rep	mRNA	2834208	2840848	.	-	.	ID=Os05t0149600-01;Name=Os05t0149600-01;Locus_id=Os05g0149600;CGSNL Gene Symbol=CUL1-2;CGSNL Gene Name=CULLIN 1-2;Oryzabase Gene Symbol Synonym(s)=OsCUL1-2;Oryzabase Gene Name Synonym(s)=Cullin 1-2;Note=Similar to CULLIN1-like protein 1.;Transcript_evidence=AK073947 (DDBJ%2C Best hit);ORF_evidence=C7SJ62 (UniProt);NIAS_FLcDNA=J033073A13;Oryzabase=22594;TENOR=Os05t0149600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	2840658	2840848	.	-	.	Parent=Os05t0149600-01
Chr05	irgsp1_rep	CDS	2840483	2840657	.	-	0	Parent=Os05t0149600-01
Chr05	irgsp1_rep	CDS	2840276	2840375	.	-	2	Parent=Os05t0149600-01
Chr05	irgsp1_rep	CDS	2838829	2838844	.	-	1	Parent=Os05t0149600-01
Chr05	irgsp1_rep	three_prime_UTR	2838659	2838828	.	-	.	Parent=Os05t0149600-01
Chr05	irgsp1_rep	three_prime_UTR	2838536	2838583	.	-	.	Parent=Os05t0149600-01
Chr05	irgsp1_rep	three_prime_UTR	2838252	2838455	.	-	.	Parent=Os05t0149600-01
Chr05	irgsp1_rep	three_prime_UTR	2838087	2838164	.	-	.	Parent=Os05t0149600-01
Chr05	irgsp1_rep	three_prime_UTR	2837804	2837893	.	-	.	Parent=Os05t0149600-01
Chr05	irgsp1_rep	three_prime_UTR	2837644	2837724	.	-	.	Parent=Os05t0149600-01
Chr05	irgsp1_rep	three_prime_UTR	2837497	2837559	.	-	.	Parent=Os05t0149600-01
Chr05	irgsp1_rep	three_prime_UTR	2836811	2836846	.	-	.	Parent=Os05t0149600-01
Chr05	irgsp1_rep	three_prime_UTR	2836651	2836737	.	-	.	Parent=Os05t0149600-01
Chr05	irgsp1_rep	three_prime_UTR	2836409	2836558	.	-	.	Parent=Os05t0149600-01
Chr05	irgsp1_rep	three_prime_UTR	2836271	2836326	.	-	.	Parent=Os05t0149600-01
Chr05	irgsp1_rep	three_prime_UTR	2835882	2836164	.	-	.	Parent=Os05t0149600-01
Chr05	irgsp1_rep	three_prime_UTR	2835573	2835716	.	-	.	Parent=Os05t0149600-01
Chr05	irgsp1_rep	three_prime_UTR	2835269	2835487	.	-	.	Parent=Os05t0149600-01
Chr05	irgsp1_rep	three_prime_UTR	2835005	2835172	.	-	.	Parent=Os05t0149600-01
Chr05	irgsp1_rep	three_prime_UTR	2834208	2834715	.	-	.	Parent=Os05t0149600-01
Chr05	irgsp1_rep	mRNA	2834206	2840842	.	-	.	ID=Os05t0149600-02;Name=Os05t0149600-02;Locus_id=Os05g0149600;RAP-DB Gene Symbol Synonym(s)=OsCUL1-2;RAP-DB Gene Name Synonym(s)=Cullin 1-2;CGSNL Gene Symbol=CUL1-2;CGSNL Gene Name=CULLIN 1-2;Oryzabase Gene Symbol Synonym(s)=OsCUL1-2;Oryzabase Gene Name Synonym(s)=Cullin 1-2;Note=Component of cullin-RING E3 ubiquitin ligase (CRL) complex%2C Salt/drought stress response%2C UV-B stress response;Transcript_evidence=AK061409 (truncated),Inferred from literature;ORF_evidence=B9FHD6;GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Molecular Function: ubiquitin protein ligase binding (GO:0031625),Cellular Component: cullin-RING ubiquitin ligase complex (GO:0031461);InterPro=Cullin repeat-like-containing domain superfamily (IPR016159),Cullin homology domain superfamily (IPR036317),Winged helix DNA-binding domain superfamily (IPR036390),Winged helix-like DNA-binding domain superfamily (IPR036388),Cullin%2C N-terminal (IPR001373),Cullin homology domain (IPR016158),Cullin protein%2C neddylation domain (IPR019559),Cullin%2C conserved site (IPR016157);NIAS_FLcDNA=006-306-B07 (truncated);Manual Curation=June 15%2C 2018;Literature_PMID=29892794;Oryzabase=22594;Expression=AK061409;TENOR=Os05t0149600-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	2840658	2840842	.	-	.	Parent=Os05t0149600-02
Chr05	irgsp1_rep	CDS	2840518	2840657	.	-	0	Parent=Os05t0149600-02
Chr05	irgsp1_rep	CDS	2840276	2840375	.	-	1	Parent=Os05t0149600-02
Chr05	irgsp1_rep	CDS	2838659	2838844	.	-	0	Parent=Os05t0149600-02
Chr05	irgsp1_rep	CDS	2838536	2838583	.	-	0	Parent=Os05t0149600-02
Chr05	irgsp1_rep	CDS	2838252	2838455	.	-	0	Parent=Os05t0149600-02
Chr05	irgsp1_rep	CDS	2838087	2838164	.	-	0	Parent=Os05t0149600-02
Chr05	irgsp1_rep	CDS	2837804	2837893	.	-	0	Parent=Os05t0149600-02
Chr05	irgsp1_rep	CDS	2837644	2837724	.	-	0	Parent=Os05t0149600-02
Chr05	irgsp1_rep	CDS	2837497	2837559	.	-	0	Parent=Os05t0149600-02
Chr05	irgsp1_rep	CDS	2836811	2836846	.	-	0	Parent=Os05t0149600-02
Chr05	irgsp1_rep	CDS	2836651	2836737	.	-	0	Parent=Os05t0149600-02
Chr05	irgsp1_rep	CDS	2836409	2836558	.	-	0	Parent=Os05t0149600-02
Chr05	irgsp1_rep	CDS	2836271	2836326	.	-	0	Parent=Os05t0149600-02
Chr05	irgsp1_rep	CDS	2835882	2836164	.	-	1	Parent=Os05t0149600-02
Chr05	irgsp1_rep	CDS	2835573	2835716	.	-	0	Parent=Os05t0149600-02
Chr05	irgsp1_rep	CDS	2835269	2835487	.	-	0	Parent=Os05t0149600-02
Chr05	irgsp1_rep	CDS	2835005	2835172	.	-	0	Parent=Os05t0149600-02
Chr05	irgsp1_rep	CDS	2834614	2834715	.	-	0	Parent=Os05t0149600-02
Chr05	irgsp1_rep	three_prime_UTR	2834206	2834613	.	-	.	Parent=Os05t0149600-02
Chr05	irgsp1_rep	mRNA	2845806	2848312	.	-	.	ID=Os05t0149701-00;Name=Os05t0149701-00;Locus_id=Os05g0149701;Note=Conserved hypothetical protein.;Transcript_evidence=BT086859 (DDBJ);ORF_evidence=C4J7R2 (UniProt);TENOR=Os05t0149701-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	2848147	2848312	.	-	.	Parent=Os05t0149701-00
Chr05	irgsp1_rep	CDS	2848121	2848146	.	-	0	Parent=Os05t0149701-00
Chr05	irgsp1_rep	CDS	2847687	2847792	.	-	1	Parent=Os05t0149701-00
Chr05	irgsp1_rep	CDS	2847515	2847567	.	-	0	Parent=Os05t0149701-00
Chr05	irgsp1_rep	CDS	2847230	2847296	.	-	1	Parent=Os05t0149701-00
Chr05	irgsp1_rep	three_prime_UTR	2847185	2847229	.	-	.	Parent=Os05t0149701-00
Chr05	irgsp1_rep	three_prime_UTR	2845806	2845970	.	-	.	Parent=Os05t0149701-00
Chr05	irgsp1_rep	mRNA	2845696	2851659	.	+	.	ID=Os05t0149800-01;Name=Os05t0149800-01;Locus_id=Os05g0149800;Oryzabase Gene Symbol Synonym(s)=OsTON2%2C TON2;Oryzabase Gene Name Synonym(s)=TONNEAU2%2C TONNEAU 2;Note=EF-Hand type domain containing protein.;Transcript_evidence=AK070081 (DDBJ%2C Best hit);ORF_evidence=B7UBT1 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J023044K03;Oryzabase=19920;Expression=AK070081;TENOR=Os05t0149800-01;KEGG=Os05t0149800-01
Chr05	irgsp1_rep	five_prime_UTR	2845696	2845806	.	+	.	Parent=Os05t0149800-01
Chr05	irgsp1_rep	CDS	2845807	2845978	.	+	0	Parent=Os05t0149800-01
Chr05	irgsp1_rep	CDS	2847197	2847288	.	+	2	Parent=Os05t0149800-01
Chr05	irgsp1_rep	CDS	2847511	2847573	.	+	0	Parent=Os05t0149800-01
Chr05	irgsp1_rep	CDS	2847696	2847794	.	+	0	Parent=Os05t0149800-01
Chr05	irgsp1_rep	CDS	2848123	2848281	.	+	0	Parent=Os05t0149800-01
Chr05	irgsp1_rep	CDS	2848817	2848888	.	+	0	Parent=Os05t0149800-01
Chr05	irgsp1_rep	CDS	2848964	2849096	.	+	0	Parent=Os05t0149800-01
Chr05	irgsp1_rep	CDS	2849210	2849274	.	+	2	Parent=Os05t0149800-01
Chr05	irgsp1_rep	CDS	2849413	2849488	.	+	0	Parent=Os05t0149800-01
Chr05	irgsp1_rep	CDS	2849633	2849734	.	+	2	Parent=Os05t0149800-01
Chr05	irgsp1_rep	CDS	2849921	2850113	.	+	2	Parent=Os05t0149800-01
Chr05	irgsp1_rep	CDS	2850973	2851213	.	+	1	Parent=Os05t0149800-01
Chr05	irgsp1_rep	three_prime_UTR	2851214	2851659	.	+	.	Parent=Os05t0149800-01
Chr05	irgsp1_rep	mRNA	2848121	2851604	.	+	.	ID=Os05t0149800-02;Name=Os05t0149800-02;Locus_id=Os05g0149800;Oryzabase Gene Symbol Synonym(s)=OsTON2%2C TON2;Oryzabase Gene Name Synonym(s)=TONNEAU2%2C TONNEAU 2;Note=Similar to Discordia 1.;Transcript_evidence=AK058366 (DDBJ%2C Best hit);ORF_evidence=B7UBT1 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249);NIAS_FLcDNA=001-014-F12;Oryzabase=19920;Expression=AK058366;TENOR=Os05t0149800-02;KEGG=Os05t0149800-02
Chr05	irgsp1_rep	five_prime_UTR	2848121	2848122	.	+	.	Parent=Os05t0149800-02
Chr05	irgsp1_rep	CDS	2848123	2848281	.	+	0	Parent=Os05t0149800-02
Chr05	irgsp1_rep	CDS	2848817	2848888	.	+	0	Parent=Os05t0149800-02
Chr05	irgsp1_rep	CDS	2848964	2849096	.	+	0	Parent=Os05t0149800-02
Chr05	irgsp1_rep	CDS	2849210	2849274	.	+	2	Parent=Os05t0149800-02
Chr05	irgsp1_rep	CDS	2849413	2849488	.	+	0	Parent=Os05t0149800-02
Chr05	irgsp1_rep	CDS	2849633	2849734	.	+	2	Parent=Os05t0149800-02
Chr05	irgsp1_rep	CDS	2849921	2850113	.	+	2	Parent=Os05t0149800-02
Chr05	irgsp1_rep	CDS	2850973	2851213	.	+	1	Parent=Os05t0149800-02
Chr05	irgsp1_rep	three_prime_UTR	2851214	2851604	.	+	.	Parent=Os05t0149800-02
Chr05	irgsp1_rep	mRNA	2849409	2851396	.	-	.	ID=Os05t0149850-00;Name=Os05t0149850-00;Locus_id=Os05g0149850;Note=Non-protein coding transcript.;Transcript_evidence=BT016490 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0149850-00
Chr05	irgsp1_rep	exon	2850947	2851396	.	-	.	Parent=Os05t0149850-00
Chr05	irgsp1_rep	exon	2849904	2850091	.	-	.	Parent=Os05t0149850-00
Chr05	irgsp1_rep	exon	2849610	2849720	.	-	.	Parent=Os05t0149850-00
Chr05	irgsp1_rep	exon	2849409	2849473	.	-	.	Parent=Os05t0149850-00
Chr05	irgsp1_rep	mRNA	2852853	2859270	.	+	.	ID=Os05t0149900-01;Name=Os05t0149900-01;Locus_id=Os05g0149900;Oryzabase Gene Symbol Synonym(s)=APC7%2C OsAPC7;Oryzabase Gene Name Synonym(s)=tetratricopeptide repeat domain containing protein%2C ANAPHASE-PROMOTING COMPLEX 7;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK101105 (DDBJ%2C Best hit),AK105677 (DDBJ%2C Best hit);ORF_evidence=XP_002881630.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J033025D11,001-201-B01;Oryzabase=20426;TENOR=Os05t0149900-01
Chr05	irgsp1_rep	five_prime_UTR	2852853	2852932	.	+	.	Parent=Os05t0149900-01
Chr05	irgsp1_rep	CDS	2852933	2853001	.	+	0	Parent=Os05t0149900-01
Chr05	irgsp1_rep	CDS	2853336	2853404	.	+	0	Parent=Os05t0149900-01
Chr05	irgsp1_rep	CDS	2853658	2853708	.	+	0	Parent=Os05t0149900-01
Chr05	irgsp1_rep	CDS	2853846	2853983	.	+	0	Parent=Os05t0149900-01
Chr05	irgsp1_rep	CDS	2854077	2854139	.	+	0	Parent=Os05t0149900-01
Chr05	irgsp1_rep	CDS	2854323	2854438	.	+	0	Parent=Os05t0149900-01
Chr05	irgsp1_rep	CDS	2854660	2854744	.	+	1	Parent=Os05t0149900-01
Chr05	irgsp1_rep	CDS	2855295	2855354	.	+	0	Parent=Os05t0149900-01
Chr05	irgsp1_rep	CDS	2855991	2856036	.	+	0	Parent=Os05t0149900-01
Chr05	irgsp1_rep	CDS	2856408	2856481	.	+	2	Parent=Os05t0149900-01
Chr05	irgsp1_rep	CDS	2856747	2856797	.	+	0	Parent=Os05t0149900-01
Chr05	irgsp1_rep	CDS	2856871	2857071	.	+	0	Parent=Os05t0149900-01
Chr05	irgsp1_rep	CDS	2857144	2857188	.	+	0	Parent=Os05t0149900-01
Chr05	irgsp1_rep	CDS	2857460	2857553	.	+	0	Parent=Os05t0149900-01
Chr05	irgsp1_rep	CDS	2857623	2857768	.	+	2	Parent=Os05t0149900-01
Chr05	irgsp1_rep	CDS	2857907	2858136	.	+	0	Parent=Os05t0149900-01
Chr05	irgsp1_rep	CDS	2858533	2858593	.	+	1	Parent=Os05t0149900-01
Chr05	irgsp1_rep	CDS	2858687	2858773	.	+	0	Parent=Os05t0149900-01
Chr05	irgsp1_rep	three_prime_UTR	2858774	2859270	.	+	.	Parent=Os05t0149900-01
Chr05	irgsp1_rep	mRNA	2852858	2857030	.	+	.	ID=Os05t0149900-02;Name=Os05t0149900-02;Locus_id=Os05g0149900;Oryzabase Gene Symbol Synonym(s)=APC7%2C OsAPC7;Oryzabase Gene Name Synonym(s)=tetratricopeptide repeat domain containing protein%2C ANAPHASE-PROMOTING COMPLEX 7;Note=Similar to predicted protein.;Transcript_evidence=AK072901 (DDBJ%2C Best hit);ORF_evidence=NP_850309.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J023145E04;Oryzabase=20426;TENOR=Os05t0149900-02
Chr05	irgsp1_rep	five_prime_UTR	2852858	2852932	.	+	.	Parent=Os05t0149900-02
Chr05	irgsp1_rep	CDS	2852933	2853001	.	+	0	Parent=Os05t0149900-02
Chr05	irgsp1_rep	CDS	2853336	2853404	.	+	0	Parent=Os05t0149900-02
Chr05	irgsp1_rep	CDS	2853658	2853708	.	+	0	Parent=Os05t0149900-02
Chr05	irgsp1_rep	CDS	2853846	2853983	.	+	0	Parent=Os05t0149900-02
Chr05	irgsp1_rep	CDS	2854077	2854139	.	+	0	Parent=Os05t0149900-02
Chr05	irgsp1_rep	CDS	2854323	2854438	.	+	0	Parent=Os05t0149900-02
Chr05	irgsp1_rep	CDS	2854660	2854744	.	+	1	Parent=Os05t0149900-02
Chr05	irgsp1_rep	CDS	2855295	2855354	.	+	0	Parent=Os05t0149900-02
Chr05	irgsp1_rep	CDS	2855991	2856036	.	+	0	Parent=Os05t0149900-02
Chr05	irgsp1_rep	CDS	2856408	2856481	.	+	2	Parent=Os05t0149900-02
Chr05	irgsp1_rep	CDS	2856747	2856797	.	+	0	Parent=Os05t0149900-02
Chr05	irgsp1_rep	CDS	2856871	2857030	.	+	0	Parent=Os05t0149900-02
Chr05	irgsp1_rep	mRNA	2852889	2860214	.	+	.	ID=Os05t0149900-03;Name=Os05t0149900-03;Locus_id=Os05g0149900;Oryzabase Gene Symbol Synonym(s)=APC7%2C OsAPC7;Oryzabase Gene Name Synonym(s)=tetratricopeptide repeat domain containing protein%2C ANAPHASE-PROMOTING COMPLEX 7;Note=Similar to tetratricopeptide repeat-containing protein.;Transcript_evidence=AK119376 (DDBJ%2C Best hit);ORF_evidence=XP_002881630.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=001-132-A09;Oryzabase=20426;TENOR=Os05t0149900-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	2852889	2853001	.	+	.	Parent=Os05t0149900-03
Chr05	irgsp1_rep	five_prime_UTR	2853336	2853404	.	+	.	Parent=Os05t0149900-03
Chr05	irgsp1_rep	five_prime_UTR	2853658	2853708	.	+	.	Parent=Os05t0149900-03
Chr05	irgsp1_rep	five_prime_UTR	2853846	2853983	.	+	.	Parent=Os05t0149900-03
Chr05	irgsp1_rep	five_prime_UTR	2854077	2854139	.	+	.	Parent=Os05t0149900-03
Chr05	irgsp1_rep	five_prime_UTR	2854240	2854292	.	+	.	Parent=Os05t0149900-03
Chr05	irgsp1_rep	CDS	2854293	2854438	.	+	0	Parent=Os05t0149900-03
Chr05	irgsp1_rep	CDS	2854660	2854744	.	+	1	Parent=Os05t0149900-03
Chr05	irgsp1_rep	CDS	2855295	2855354	.	+	0	Parent=Os05t0149900-03
Chr05	irgsp1_rep	CDS	2855991	2856036	.	+	0	Parent=Os05t0149900-03
Chr05	irgsp1_rep	CDS	2856408	2856481	.	+	2	Parent=Os05t0149900-03
Chr05	irgsp1_rep	CDS	2856747	2856797	.	+	0	Parent=Os05t0149900-03
Chr05	irgsp1_rep	CDS	2856871	2857071	.	+	0	Parent=Os05t0149900-03
Chr05	irgsp1_rep	CDS	2857144	2857188	.	+	0	Parent=Os05t0149900-03
Chr05	irgsp1_rep	CDS	2857460	2857553	.	+	0	Parent=Os05t0149900-03
Chr05	irgsp1_rep	CDS	2857623	2857768	.	+	2	Parent=Os05t0149900-03
Chr05	irgsp1_rep	CDS	2857907	2858136	.	+	0	Parent=Os05t0149900-03
Chr05	irgsp1_rep	CDS	2858533	2858593	.	+	1	Parent=Os05t0149900-03
Chr05	irgsp1_rep	CDS	2858687	2858773	.	+	0	Parent=Os05t0149900-03
Chr05	irgsp1_rep	three_prime_UTR	2858774	2858963	.	+	.	Parent=Os05t0149900-03
Chr05	irgsp1_rep	three_prime_UTR	2859284	2860214	.	+	.	Parent=Os05t0149900-03
Chr05	irgsp1_rep	mRNA	2859418	2859762	.	-	.	ID=Os05t0149950-00;Name=Os05t0149950-00;Locus_id=Os05g0149950;CGSNL Gene Symbol=GRX15;CGSNL Gene Name=GLUTAREDOXIN 15;Oryzabase Gene Symbol Synonym(s)=OsGRX15;Oryzabase Gene Name Synonym(s)=glutaredoxin 15;Note=Monothiol glutaredoxin-S8.;Transcript_evidence=P0C290 (UniProt);ORF_evidence=P0C290 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin (IPR002109),Glutaredoxin-like%2C plant II (IPR011905),Thioredoxin-like fold (IPR012336);Oryzabase=13570;TENOR=Os05t0149950-00
Chr05	irgsp1_rep	CDS	2859418	2859762	.	-	0	Parent=Os05t0149950-00
Chr05	irgsp1_rep	mRNA	2862711	2865760	.	-	.	ID=Os05t0150000-01;Name=Os05t0150000-01;Locus_id=Os05g0150000;Note=Proline synthetase co-transcribed bacterial homolog protein.;Transcript_evidence=AK289260 (DDBJ%2C Best hit);ORF_evidence=XP_002889904.1 (RefSeq);InterPro=Alanine racemase%2C N-terminal (IPR001608),Uncharacterised protein family UPF0001 (IPR011078);NIAS_FLcDNA=J100085H05;TENOR=Os05t0150000-01;KEGG=Os05t0150000-01
Chr05	irgsp1_rep	five_prime_UTR	2865681	2865760	.	-	.	Parent=Os05t0150000-01
Chr05	irgsp1_rep	CDS	2865459	2865680	.	-	0	Parent=Os05t0150000-01
Chr05	irgsp1_rep	CDS	2864464	2864530	.	-	0	Parent=Os05t0150000-01
Chr05	irgsp1_rep	CDS	2864016	2864062	.	-	2	Parent=Os05t0150000-01
Chr05	irgsp1_rep	CDS	2863590	2863677	.	-	0	Parent=Os05t0150000-01
Chr05	irgsp1_rep	CDS	2863173	2863306	.	-	2	Parent=Os05t0150000-01
Chr05	irgsp1_rep	CDS	2862991	2863089	.	-	0	Parent=Os05t0150000-01
Chr05	irgsp1_rep	CDS	2862834	2862908	.	-	0	Parent=Os05t0150000-01
Chr05	irgsp1_rep	three_prime_UTR	2862711	2862833	.	-	.	Parent=Os05t0150000-01
Chr05	irgsp1_rep	mRNA	2869024	2870322	.	+	.	ID=Os05t0150100-01;Name=Os05t0150100-01;Locus_id=Os05g0150100;Oryzabase Gene Symbol Synonym(s)=OsSTA140;Note=Conserved hypothetical protein.;Transcript_evidence=AK071562 (DDBJ%2C Best hit);ORF_evidence=B9FHD8 (UniProt);NIAS_FLcDNA=J023102P22;Oryzabase=19429;TENOR=Os05t0150100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	2869024	2869950	.	+	0	Parent=Os05t0150100-01
Chr05	irgsp1_rep	three_prime_UTR	2869951	2870322	.	+	.	Parent=Os05t0150100-01
Chr05	irgsp1_rep	mRNA	2874325	2884462	.	+	.	ID=Os05t0150300-01;Name=Os05t0150300-01;Locus_id=Os05g0150300;Note=Similar to Possible global transcription activator SNF2L1 (SWI/SNF related matrix associated actin dependent regulator of Chromatin subfamily A member 1).;Transcript_evidence=AK100732 (DDBJ%2C Best hit);ORF_evidence=XP_002315568.1 (RefSeq);GO=Biological Process: Chromatin remodeling (GO:0006338),Biological Process: ATP-dependent Chromatin remodeling (GO:0043044),Cellular Component: nucleus (GO:0005634),Cellular Component: Chromatin remodeling complex (GO:0016585),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: helicase activity (GO:0004386),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides (GO:0016818),Molecular Function: nucleosome binding (GO:0031491);InterPro=SNF2-related (IPR000330),SANT domain%2C DNA binding (IPR001005),Helicase%2C C-terminal (IPR001650),Homeodomain-like (IPR009057),DEAD-like helicase (IPR014001),ATPase%2C nucleosome remodelling ISWI%2C HAND domain (IPR015194),SLIDE (IPR015195),SANT%2C eukarya (IPR017884);NIAS_FLcDNA=J023117L05;Expression=AK100732;TENOR=Os05t0150300-01;KEGG=Os05t0150300-01 (EC:3.6.1.-)
Chr05	irgsp1_rep	five_prime_UTR	2874325	2874534	.	+	.	Parent=Os05t0150300-01
Chr05	irgsp1_rep	CDS	2874535	2875023	.	+	0	Parent=Os05t0150300-01
Chr05	irgsp1_rep	CDS	2875599	2875730	.	+	0	Parent=Os05t0150300-01
Chr05	irgsp1_rep	CDS	2875876	2875979	.	+	0	Parent=Os05t0150300-01
Chr05	irgsp1_rep	CDS	2876576	2876688	.	+	1	Parent=Os05t0150300-01
Chr05	irgsp1_rep	CDS	2878805	2878902	.	+	2	Parent=Os05t0150300-01
Chr05	irgsp1_rep	CDS	2879032	2879211	.	+	0	Parent=Os05t0150300-01
Chr05	irgsp1_rep	CDS	2879289	2879510	.	+	0	Parent=Os05t0150300-01
Chr05	irgsp1_rep	CDS	2879666	2879800	.	+	0	Parent=Os05t0150300-01
Chr05	irgsp1_rep	CDS	2879885	2880167	.	+	0	Parent=Os05t0150300-01
Chr05	irgsp1_rep	CDS	2880254	2880327	.	+	2	Parent=Os05t0150300-01
Chr05	irgsp1_rep	CDS	2880560	2880780	.	+	0	Parent=Os05t0150300-01
Chr05	irgsp1_rep	CDS	2880859	2880946	.	+	1	Parent=Os05t0150300-01
Chr05	irgsp1_rep	CDS	2881047	2881140	.	+	0	Parent=Os05t0150300-01
Chr05	irgsp1_rep	CDS	2881223	2881411	.	+	2	Parent=Os05t0150300-01
Chr05	irgsp1_rep	CDS	2881765	2881796	.	+	2	Parent=Os05t0150300-01
Chr05	irgsp1_rep	CDS	2881938	2882017	.	+	0	Parent=Os05t0150300-01
Chr05	irgsp1_rep	CDS	2882114	2882203	.	+	1	Parent=Os05t0150300-01
Chr05	irgsp1_rep	CDS	2882307	2882376	.	+	1	Parent=Os05t0150300-01
Chr05	irgsp1_rep	CDS	2882636	2882681	.	+	0	Parent=Os05t0150300-01
Chr05	irgsp1_rep	CDS	2882766	2882824	.	+	2	Parent=Os05t0150300-01
Chr05	irgsp1_rep	CDS	2882984	2883149	.	+	0	Parent=Os05t0150300-01
Chr05	irgsp1_rep	CDS	2883325	2883503	.	+	2	Parent=Os05t0150300-01
Chr05	irgsp1_rep	CDS	2883582	2883788	.	+	0	Parent=Os05t0150300-01
Chr05	irgsp1_rep	CDS	2883925	2884029	.	+	0	Parent=Os05t0150300-01
Chr05	irgsp1_rep	CDS	2884132	2884152	.	+	0	Parent=Os05t0150300-01
Chr05	irgsp1_rep	three_prime_UTR	2884153	2884462	.	+	.	Parent=Os05t0150300-01
Chr05	irgsp1_rep	mRNA	2884880	2889475	.	-	.	ID=Os05t0150400-01;Name=Os05t0150400-01;Locus_id=Os05g0150400;Note=Double-stranded RNA-binding domain containing protein.;Transcript_evidence=AK110983 (DDBJ%2C Best hit);ORF_evidence=B9FMH4 (UniProt);GO=Biological Process: rRNA catabolic process (GO:0016075),Cellular Component: intracellular (GO:0005622),Molecular Function: RNA binding (GO:0003723),Molecular Function: double-stranded RNA binding (GO:0003725),Molecular Function: ribonuclease III activity (GO:0004525);InterPro=Double-stranded RNA-binding (IPR001159),Ribonuclease III%2C bacterial (IPR011907),Double-stranded RNA-binding-like (IPR014720);NIAS_FLcDNA=002-174-C11;TENOR=Os05t0150400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	2889272	2889475	.	-	.	Parent=Os05t0150400-01
Chr05	irgsp1_rep	five_prime_UTR	2888548	2888678	.	-	.	Parent=Os05t0150400-01
Chr05	irgsp1_rep	CDS	2888527	2888547	.	-	0	Parent=Os05t0150400-01
Chr05	irgsp1_rep	CDS	2888122	2888376	.	-	0	Parent=Os05t0150400-01
Chr05	irgsp1_rep	CDS	2886684	2886903	.	-	0	Parent=Os05t0150400-01
Chr05	irgsp1_rep	CDS	2885124	2886439	.	-	2	Parent=Os05t0150400-01
Chr05	irgsp1_rep	three_prime_UTR	2884880	2885123	.	-	.	Parent=Os05t0150400-01
Chr05	irgsp1_rep	mRNA	2892746	2898971	.	-	.	ID=Os05t0150500-01;Name=Os05t0150500-01;Locus_id=Os05g0150500;RAP-DB Gene Symbol Synonym(s)=TIR1%2C OsTIR1;RAP-DB Gene Name Synonym(s)=transport inhibitor response1;Oryzabase Gene Symbol Synonym(s)=OsTIR1%2C TIR1%2C OsFbox248%2C Os_F0717;Oryzabase Gene Name Synonym(s)=transport inhibitor response 1%2C Transport Inhibitor Response1%2C F-box protein 248;Note=F-Box auxin receptor protein%2C Nuclear protein%2C Flag leaf inclination%2C Primary root growth%2C Crown root initiation%2C Seed development%2C Tillering;Transcript_evidence=EU400583 (indica);ORF_evidence=Q0DKP3;GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box-like domain superfamily (IPR036047),Leucine-rich repeat domain superfamily (IPR032675),Leucine-rich repeat%2C cysteine-containing subtype (IPR006553),Leucine-rich repeat (IPR001611);Manual Curation=December 12%2C 2017;Literature_PMID=22846038;Oryzabase=9794;TENOR=Os05t0150500-00;KEGG=Os05t0150500-00;Subcellular location=nucleus (GO:0005634)
Chr05	irgsp1_rep	five_prime_UTR	2898958	2898971	.	-	.	Parent=Os05t0150500-01
Chr05	irgsp1_rep	CDS	2898458	2898957	.	-	0	Parent=Os05t0150500-01
Chr05	irgsp1_rep	CDS	2894729	2895221	.	-	1	Parent=Os05t0150500-01
Chr05	irgsp1_rep	CDS	2893167	2893937	.	-	0	Parent=Os05t0150500-01
Chr05	irgsp1_rep	three_prime_UTR	2892746	2893166	.	-	.	Parent=Os05t0150500-01
Chr05	irgsp1_rep	mRNA	2893494	2899089	.	+	.	ID=Os05t0150550-00;Name=Os05t0150550-00;Locus_id=Os05g0150550;Note=Hypothetical protein.;Transcript_evidence=tplb0032b19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0150550-00
Chr05	irgsp1_rep	five_prime_UTR	2893494	2893928	.	+	.	Parent=Os05t0150550-00
Chr05	irgsp1_rep	five_prime_UTR	2894721	2895207	.	+	.	Parent=Os05t0150550-00
Chr05	irgsp1_rep	five_prime_UTR	2898428	2898472	.	+	.	Parent=Os05t0150550-00
Chr05	irgsp1_rep	CDS	2898473	2898766	.	+	0	Parent=Os05t0150550-00
Chr05	irgsp1_rep	three_prime_UTR	2898767	2899089	.	+	.	Parent=Os05t0150550-00
Chr05	irgsp1_rep	mRNA	2906270	2913774	.	-	.	ID=Os05t0150600-01;Name=Os05t0150600-01;Locus_id=Os05g0150600;Oryzabase Gene Name Synonym(s)=RecQ homologue%2C RecQ-like helices%2C RecQ helicase;Note=Hypothetical conserved gene.;Transcript_evidence=AK063338 (DDBJ%2C Best hit);ORF_evidence=D7U9T8 (UniProt);GO=Biological Process: DNA recombination (GO:0006310),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=DNA helicase%2C ATP-dependent%2C RecQ type (IPR004589),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (IPR015940);NIAS_FLcDNA=001-114-A09;Oryzabase=21299;Expression=AK063338;TENOR=Os05t0150600-01;KEGG=Os05t0150600-01 (EC:3.6.1.-)
Chr05	irgsp1_rep	five_prime_UTR	2913443	2913774	.	-	.	Parent=Os05t0150600-01
Chr05	irgsp1_rep	CDS	2912839	2913442	.	-	0	Parent=Os05t0150600-01
Chr05	irgsp1_rep	CDS	2912507	2912726	.	-	2	Parent=Os05t0150600-01
Chr05	irgsp1_rep	CDS	2912318	2912428	.	-	1	Parent=Os05t0150600-01
Chr05	irgsp1_rep	CDS	2911914	2912103	.	-	1	Parent=Os05t0150600-01
Chr05	irgsp1_rep	CDS	2911099	2911367	.	-	0	Parent=Os05t0150600-01
Chr05	irgsp1_rep	CDS	2906825	2906837	.	-	1	Parent=Os05t0150600-01
Chr05	irgsp1_rep	three_prime_UTR	2906270	2906824	.	-	.	Parent=Os05t0150600-01
Chr05	irgsp1_rep	mRNA	2906339	2913774	.	-	.	ID=Os05t0150600-02;Name=Os05t0150600-02;Locus_id=Os05g0150600;Oryzabase Gene Name Synonym(s)=RecQ homologue%2C RecQ-like helices%2C RecQ helicase;Note=DNA helicase%2C ATP-dependent%2C RecQ type domain containing protein.;Transcript_evidence=AK072977 (DDBJ%2C Best hit);ORF_evidence=D7U9T8 (UniProt);GO=Biological Process: DNA recombination (GO:0006310),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=Helicase%2C C-terminal (IPR001650),DNA helicase%2C ATP-dependent%2C RecQ type (IPR004589),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (IPR015940);NIAS_FLcDNA=J023146C24;Oryzabase=21299;Expression=AK072977;TENOR=Os05t0150600-02;KEGG=Os05t0150600-02
Chr05	irgsp1_rep	five_prime_UTR	2913443	2913774	.	-	.	Parent=Os05t0150600-02
Chr05	irgsp1_rep	CDS	2912839	2913442	.	-	0	Parent=Os05t0150600-02
Chr05	irgsp1_rep	CDS	2912507	2912726	.	-	2	Parent=Os05t0150600-02
Chr05	irgsp1_rep	CDS	2912318	2912428	.	-	1	Parent=Os05t0150600-02
Chr05	irgsp1_rep	CDS	2911914	2912103	.	-	1	Parent=Os05t0150600-02
Chr05	irgsp1_rep	CDS	2911064	2911367	.	-	0	Parent=Os05t0150600-02
Chr05	irgsp1_rep	CDS	2910584	2910783	.	-	2	Parent=Os05t0150600-02
Chr05	irgsp1_rep	CDS	2910340	2910396	.	-	0	Parent=Os05t0150600-02
Chr05	irgsp1_rep	CDS	2909735	2909815	.	-	0	Parent=Os05t0150600-02
Chr05	irgsp1_rep	CDS	2909282	2909345	.	-	0	Parent=Os05t0150600-02
Chr05	irgsp1_rep	CDS	2908708	2908807	.	-	2	Parent=Os05t0150600-02
Chr05	irgsp1_rep	CDS	2908158	2908245	.	-	1	Parent=Os05t0150600-02
Chr05	irgsp1_rep	CDS	2907883	2907996	.	-	0	Parent=Os05t0150600-02
Chr05	irgsp1_rep	CDS	2907580	2907672	.	-	0	Parent=Os05t0150600-02
Chr05	irgsp1_rep	CDS	2906529	2906837	.	-	0	Parent=Os05t0150600-02
Chr05	irgsp1_rep	three_prime_UTR	2906339	2906528	.	-	.	Parent=Os05t0150600-02
Chr05	irgsp1_rep	mRNA	2917556	2918143	.	+	.	ID=Os05t0150733-00;Name=Os05t0150733-00;Locus_id=Os05g0150733;Note=Similar to pro-resilin.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001148515.1 (RefSeq);TENOR=Os05t0150733-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	2917556	2918143	.	+	0	Parent=Os05t0150733-00
Chr05	irgsp1_rep	mRNA	2925781	2928082	.	+	.	ID=Os05t0150800-01;Name=Os05t0150800-01;Locus_id=Os05g0150800;Note=Similar to Plastid 5%2C10-methylene-tetrahydrofolate dehydrogenase (Fragment).;Transcript_evidence=AK103505 (DDBJ%2C Best hit);ORF_evidence=B6T3G6 (UniProt);GO=Biological Process: folic acid-containing compound biosynthetic process (GO:0009396),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: methylenetetrahydrofolate dehydrogenase (NADP+) activity (GO:0004488);InterPro=Tetrahydrofolate dehydrogenase/cyclohydrolase (IPR000672),NAD(P)-binding domain (IPR016040),Tetrahydrofolate dehydrogenase/cyclohydrolase%2C catalytic domain (IPR020630),Tetrahydrofolate dehydrogenase/cyclohydrolase%2C NAD(P)-binding domain (IPR020631),Tetrahydrofolate dehydrogenase/cyclohydrolase%2C conserved site (IPR020867);NIAS_FLcDNA=J033131D02;Expression=AK103505;TENOR=Os05t0150800-01;KEGG=Os05t0150800-01 (EC:1.5.1.5%2C EC:3.5.4.9%2C EC:6.3.4.3)
Chr05	irgsp1_rep	five_prime_UTR	2925781	2925891	.	+	.	Parent=Os05t0150800-01
Chr05	irgsp1_rep	CDS	2925892	2925984	.	+	0	Parent=Os05t0150800-01
Chr05	irgsp1_rep	CDS	2926069	2926252	.	+	0	Parent=Os05t0150800-01
Chr05	irgsp1_rep	CDS	2927187	2927344	.	+	2	Parent=Os05t0150800-01
Chr05	irgsp1_rep	CDS	2927431	2927643	.	+	0	Parent=Os05t0150800-01
Chr05	irgsp1_rep	CDS	2927726	2927956	.	+	0	Parent=Os05t0150800-01
Chr05	irgsp1_rep	three_prime_UTR	2927957	2928082	.	+	.	Parent=Os05t0150800-01
Chr05	irgsp1_rep	mRNA	2926874	2928082	.	+	.	ID=Os05t0150800-02;Name=Os05t0150800-02;Locus_id=Os05g0150800;Note=Similar to C-1-tetrahydrofolate synthase%2C cytoplasmic.;Transcript_evidence=AK104502 (DDBJ%2C Best hit),AK060882 (DDBJ%2C Best hit);ORF_evidence=B6T3G6 (UniProt);GO=Biological Process: folic acid-containing compound biosynthetic process (GO:0009396),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: methylenetetrahydrofolate dehydrogenase (NADP+) activity (GO:0004488);InterPro=Tetrahydrofolate dehydrogenase/cyclohydrolase%2C catalytic domain (IPR020630);NIAS_FLcDNA=006-302-F01,001-035-A12;Expression=AK104502;TENOR=Os05t0150800-02;KEGG=Os05t0150800-02 (EC:1.5.1.5%2C EC:3.5.4.9%2C EC:6.3.4.3)
Chr05	irgsp1_rep	five_prime_UTR	2926874	2927167	.	+	.	Parent=Os05t0150800-02
Chr05	irgsp1_rep	CDS	2927168	2927410	.	+	0	Parent=Os05t0150800-02
Chr05	irgsp1_rep	three_prime_UTR	2927411	2928082	.	+	.	Parent=Os05t0150800-02
Chr05	irgsp1_rep	mRNA	2928149	2931982	.	-	.	ID=Os05t0150900-01;Name=Os05t0150900-01;Locus_id=Os05g0150900;Oryzabase Gene Name Synonym(s)=histidyl tRNA synthetase%2C Histidyl-tRNA Synthetase%2C Histidine--tRNA ligase%2C Histidine:tRNA ligase;Note=Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA ligase) (HisRS).;Transcript_evidence=AK099789 (DDBJ%2C Best hit);ORF_evidence=P93422 (UniProt);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: histidyl-tRNA aminoacylation (GO:0006427),Biological Process: biosynthetic process (GO:0009058),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: histidine-tRNA ligase activity (GO:0004821),Molecular Function: ATP binding (GO:0005524),Molecular Function: ammonia-lyase activity (GO:0016841);InterPro=Phenylalanine/histidine ammonia-lyase (IPR001106),Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved domain (IPR002314),Anticodon-binding (IPR004154),Histidyl-tRNA synthetase%2C class IIa (IPR004516),Aminoacyl-tRNA synthetase%2C class II (IPR006195),L-Aspartase-like (IPR008948),Histidyl-tRNA synthetase%2C class IIa%2C subgroup (IPR015807);NIAS_FLcDNA=J013097A18;Oryzabase=13776;Expression=AK099789;TENOR=Os05t0150900-01;KEGG=Os05t0150900-01 (EC:6.1.1.21)
Chr05	irgsp1_rep	five_prime_UTR	2931907	2931982	.	-	.	Parent=Os05t0150900-01
Chr05	irgsp1_rep	CDS	2931803	2931906	.	-	0	Parent=Os05t0150900-01
Chr05	irgsp1_rep	CDS	2930545	2931511	.	-	1	Parent=Os05t0150900-01
Chr05	irgsp1_rep	CDS	2930192	2930371	.	-	0	Parent=Os05t0150900-01
Chr05	irgsp1_rep	CDS	2929573	2929965	.	-	0	Parent=Os05t0150900-01
Chr05	irgsp1_rep	CDS	2929204	2929485	.	-	0	Parent=Os05t0150900-01
Chr05	irgsp1_rep	CDS	2928725	2928865	.	-	0	Parent=Os05t0150900-01
Chr05	irgsp1_rep	CDS	2928349	2928648	.	-	0	Parent=Os05t0150900-01
Chr05	irgsp1_rep	three_prime_UTR	2928149	2928348	.	-	.	Parent=Os05t0150900-01
Chr05	irgsp1_rep	mRNA	2928146	2931980	.	-	.	ID=Os05t0150900-02;Name=Os05t0150900-02;Locus_id=Os05g0150900;Oryzabase Gene Name Synonym(s)=histidyl tRNA synthetase%2C Histidyl-tRNA Synthetase%2C Histidine--tRNA ligase%2C Histidine:tRNA ligase;Note=Hypothetical conserved gene.;Transcript_evidence=AK243038 (DDBJ%2C Best hit);ORF_evidence=Q9ZTW6 (UniProt);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: histidyl-tRNA aminoacylation (GO:0006427),Biological Process: biosynthetic process (GO:0009058),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: histidine-tRNA ligase activity (GO:0004821),Molecular Function: ATP binding (GO:0005524),Molecular Function: ammonia-lyase activity (GO:0016841);InterPro=Phenylalanine/histidine ammonia-lyase (IPR001106),Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved domain (IPR002314),Anticodon-binding (IPR004154),Histidyl-tRNA synthetase%2C class IIa (IPR004516),Aminoacyl-tRNA synthetase%2C class II (IPR006195),L-Aspartase-like (IPR008948),Histidyl-tRNA synthetase%2C class IIa%2C subgroup (IPR015807);NIAS_FLcDNA=J100007H16;Oryzabase=13776;TENOR=Os05t0150900-02
Chr05	irgsp1_rep	five_prime_UTR	2931907	2931980	.	-	.	Parent=Os05t0150900-02
Chr05	irgsp1_rep	CDS	2930545	2931906	.	-	0	Parent=Os05t0150900-02
Chr05	irgsp1_rep	CDS	2930192	2930371	.	-	0	Parent=Os05t0150900-02
Chr05	irgsp1_rep	CDS	2929573	2929965	.	-	0	Parent=Os05t0150900-02
Chr05	irgsp1_rep	CDS	2929204	2929485	.	-	0	Parent=Os05t0150900-02
Chr05	irgsp1_rep	CDS	2928725	2928865	.	-	0	Parent=Os05t0150900-02
Chr05	irgsp1_rep	CDS	2928349	2928648	.	-	0	Parent=Os05t0150900-02
Chr05	irgsp1_rep	three_prime_UTR	2928146	2928348	.	-	.	Parent=Os05t0150900-02
Chr05	irgsp1_rep	mRNA	2928135	2931062	.	-	.	ID=Os05t0150900-03;Name=Os05t0150900-03;Locus_id=Os05g0150900;Oryzabase Gene Name Synonym(s)=histidyl tRNA synthetase%2C Histidyl-tRNA Synthetase%2C Histidine--tRNA ligase%2C Histidine:tRNA ligase;Note=Similar to Histidyl-tRNA synthetase (Fragment).;Transcript_evidence=AK059520 (DDBJ%2C Best hit);ORF_evidence=Q9ZTW6 (UniProt);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: histidyl-tRNA aminoacylation (GO:0006427),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: histidine-tRNA ligase activity (GO:0004821),Molecular Function: ATP binding (GO:0005524);InterPro=Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved domain (IPR002314),Anticodon-binding (IPR004154),Histidyl-tRNA synthetase%2C class IIa (IPR004516),Aminoacyl-tRNA synthetase%2C class II (IPR006195),Histidyl-tRNA synthetase%2C class IIa%2C subgroup (IPR015807);NIAS_FLcDNA=001-029-C05;Oryzabase=13776;TENOR=Os05t0150900-03
Chr05	irgsp1_rep	five_prime_UTR	2931007	2931062	.	-	.	Parent=Os05t0150900-03
Chr05	irgsp1_rep	CDS	2930545	2931006	.	-	0	Parent=Os05t0150900-03
Chr05	irgsp1_rep	CDS	2930192	2930371	.	-	0	Parent=Os05t0150900-03
Chr05	irgsp1_rep	CDS	2929573	2929965	.	-	0	Parent=Os05t0150900-03
Chr05	irgsp1_rep	CDS	2929204	2929485	.	-	0	Parent=Os05t0150900-03
Chr05	irgsp1_rep	CDS	2928725	2928865	.	-	0	Parent=Os05t0150900-03
Chr05	irgsp1_rep	CDS	2928349	2928648	.	-	0	Parent=Os05t0150900-03
Chr05	irgsp1_rep	three_prime_UTR	2928135	2928348	.	-	.	Parent=Os05t0150900-03
Chr05	irgsp1_rep	mRNA	2936549	2944391	.	-	.	ID=Os05t0151000-00;Name=Os05t0151000-00;Locus_id=Os05g0151000;Note=Similar to DNA-directed RNA polymerase.;Transcript_evidence=AK371102 (DDBJ);ORF_evidence=C5YGY9 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Biological Process: transcription from RNA polymerase II promoter (GO:0006366),Cellular Component: DNA-directed RNA polymerase II%2C core complex (GO:0005665),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899);InterPro=RNA polymerase II%2C heptapeptide repeat%2C eukaryotic (IPR000684),RNA polymerase%2C alpha subunit (IPR000722),RNA polymerase%2C N-terminal (IPR006592),RNA polymerase Rpb1%2C domain 3 (IPR007066),RNA polymerase Rpb1%2C domain 7 (IPR007073),RNA polymerase Rpb1%2C domain 6 (IPR007075),RNA polymerase Rpb1%2C domain 1 (IPR007080),RNA polymerase Rpb1%2C domain 5 (IPR007081),RNA polymerase Rpb1%2C domain 4 (IPR007083);TENOR=Os05t0151000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	2944385	2944391	.	-	.	Parent=Os05t0151000-00
Chr05	irgsp1_rep	CDS	2944298	2944384	.	-	0	Parent=Os05t0151000-00
Chr05	irgsp1_rep	CDS	2943230	2943493	.	-	0	Parent=Os05t0151000-00
Chr05	irgsp1_rep	CDS	2942256	2942555	.	-	0	Parent=Os05t0151000-00
Chr05	irgsp1_rep	CDS	2942013	2942171	.	-	0	Parent=Os05t0151000-00
Chr05	irgsp1_rep	CDS	2941775	2941936	.	-	0	Parent=Os05t0151000-00
Chr05	irgsp1_rep	CDS	2941473	2941693	.	-	0	Parent=Os05t0151000-00
Chr05	irgsp1_rep	CDS	2941258	2941399	.	-	1	Parent=Os05t0151000-00
Chr05	irgsp1_rep	CDS	2940819	2941154	.	-	0	Parent=Os05t0151000-00
Chr05	irgsp1_rep	CDS	2940456	2940742	.	-	0	Parent=Os05t0151000-00
Chr05	irgsp1_rep	CDS	2940111	2940369	.	-	1	Parent=Os05t0151000-00
Chr05	irgsp1_rep	CDS	2937225	2940009	.	-	0	Parent=Os05t0151000-00
Chr05	irgsp1_rep	CDS	2936836	2937169	.	-	2	Parent=Os05t0151000-00
Chr05	irgsp1_rep	CDS	2936549	2936741	.	-	1	Parent=Os05t0151000-00
Chr05	irgsp1_rep	mRNA	2967476	2968672	.	+	.	ID=Os05t0151100-00;Name=Os05t0151100-00;Locus_id=Os05g0151100;Note=Similar to desiccation-related protein PCC13-62.;Transcript_evidence=EU967146 (DDBJ);ORF_evidence=B6TNA6 (UniProt);TENOR=Os05t0151100-00;KEGG=Os05t0151100-00
Chr05	irgsp1_rep	CDS	2967476	2968175	.	+	0	Parent=Os05t0151100-00
Chr05	irgsp1_rep	CDS	2968260	2968672	.	+	2	Parent=Os05t0151100-00
Chr05	irgsp1_rep	mRNA	2967542	2968674	.	-	.	ID=Os05t0151150-00;Name=Os05t0151150-00;Locus_id=Os05g0151150;Note=Hypothetical gene.;Transcript_evidence=EU975566 (DDBJ);ORF_evidence=GeneMark;TENOR=Os05t0151150-00;KEGG=Os05t0151150-00
Chr05	irgsp1_rep	five_prime_UTR	2968673	2968674	.	-	.	Parent=Os05t0151150-00
Chr05	irgsp1_rep	CDS	2968267	2968672	.	-	0	Parent=Os05t0151150-00
Chr05	irgsp1_rep	CDS	2967546	2968186	.	-	2	Parent=Os05t0151150-00
Chr05	irgsp1_rep	three_prime_UTR	2967542	2967545	.	-	.	Parent=Os05t0151150-00
Chr05	irgsp1_rep	mRNA	2969525	2970353	.	+	.	ID=Os05t0151200-01;Name=Os05t0151200-01;Locus_id=Os05g0151200;Note=TspO/MBR-related protein family protein.;Transcript_evidence=AK240936 (DDBJ%2C Best hit);ORF_evidence=NP_001147341.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=TspO/MBR-related protein (IPR004307);NIAS_FLcDNA=J065041L18;TENOR=Os05t0151200-01;KEGG=Os05t0151200-01
Chr05	irgsp1_rep	five_prime_UTR	2969525	2969611	.	+	.	Parent=Os05t0151200-01
Chr05	irgsp1_rep	CDS	2969612	2970193	.	+	0	Parent=Os05t0151200-01
Chr05	irgsp1_rep	three_prime_UTR	2970194	2970353	.	+	.	Parent=Os05t0151200-01
Chr05	irgsp1_rep	mRNA	2970911	2972775	.	-	.	ID=Os05t0151300-01;Name=Os05t0151300-01;Locus_id=Os05g0151300;Note=Rubber elongation factor family protein.;Transcript_evidence=AK243548 (DDBJ%2C Best hit);ORF_evidence=A2Y0H2 (UniProt);InterPro=Rubber elongation factor (IPR008802);NIAS_FLcDNA=J100079E11;TENOR=Os05t0151300-01;KEGG=Os05t0151300-01
Chr05	irgsp1_rep	five_prime_UTR	2972623	2972775	.	-	.	Parent=Os05t0151300-01
Chr05	irgsp1_rep	CDS	2972581	2972622	.	-	0	Parent=Os05t0151300-01
Chr05	irgsp1_rep	CDS	2972200	2972463	.	-	0	Parent=Os05t0151300-01
Chr05	irgsp1_rep	CDS	2971167	2971622	.	-	0	Parent=Os05t0151300-01
Chr05	irgsp1_rep	three_prime_UTR	2970911	2971166	.	-	.	Parent=Os05t0151300-01
Chr05	irgsp1_rep	mRNA	2973694	2978049	.	-	.	ID=Os05t0151400-01;Name=Os05t0151400-01;Locus_id=Os05g0151400;Note=AIG1 domain containing protein.;Transcript_evidence=AK102924 (DDBJ%2C Best hit);ORF_evidence=XP_002874910.1 (RefSeq);GO=Molecular Function: GTP binding (GO:0005525),Molecular Function: hydrolase activity%2C acting on acid anhydrides (GO:0016817);InterPro=Chloroplast protein import component Toc86/159 (IPR005690),AIG1 (IPR006703),Domain of unknown function DUF3406%2C chloroplast translocase (IPR024283);NIAS_FLcDNA=J033114D01;TENOR=Os05t0151400-01
Chr05	irgsp1_rep	five_prime_UTR	2977925	2978049	.	-	.	Parent=Os05t0151400-01
Chr05	irgsp1_rep	CDS	2977049	2977924	.	-	0	Parent=Os05t0151400-01
Chr05	irgsp1_rep	CDS	2973914	2976958	.	-	0	Parent=Os05t0151400-01
Chr05	irgsp1_rep	three_prime_UTR	2973694	2973913	.	-	.	Parent=Os05t0151400-01
Chr05	irgsp1_rep	mRNA	2973755	2975747	.	-	.	ID=Os05t0151400-02;Name=Os05t0151400-02;Locus_id=Os05g0151400;Note=Similar to TOC159 (PLASMID PROTEIN IMPORT 2).;Transcript_evidence=AK061885 (DDBJ%2C Best hit);ORF_evidence=NP_567242.2 (RefSeq);GO=Molecular Function: GTP binding (GO:0005525),Molecular Function: hydrolase activity%2C acting on acid anhydrides (GO:0016817);InterPro=Chloroplast protein import component Toc86/159 (IPR005690),AIG1 (IPR006703),Domain of unknown function DUF3406%2C chloroplast translocase (IPR024283);NIAS_FLcDNA=001-041-F07;Expression=AK061885;TENOR=Os05t0151400-02;KEGG=Os05t0151400-02
Chr05	irgsp1_rep	five_prime_UTR	2975747	2975747	.	-	.	Parent=Os05t0151400-02
Chr05	irgsp1_rep	CDS	2973914	2975746	.	-	0	Parent=Os05t0151400-02
Chr05	irgsp1_rep	three_prime_UTR	2973755	2973913	.	-	.	Parent=Os05t0151400-02
Chr05	irgsp1_rep	mRNA	2973691	2977570	.	-	.	ID=Os05t0151400-03;Name=Os05t0151400-03;Locus_id=Os05g0151400;Note=Similar to TOC159.;Transcript_evidence=AK065647 (DDBJ%2C Best hit);ORF_evidence=XP_002874910.1 (RefSeq);GO=Molecular Function: GTP binding (GO:0005525),Molecular Function: hydrolase activity%2C acting on acid anhydrides (GO:0016817);InterPro=Chloroplast protein import component Toc86/159 (IPR005690),AIG1 (IPR006703),Domain of unknown function DUF3406%2C chloroplast translocase (IPR024283);NIAS_FLcDNA=J013038D10;TENOR=Os05t0151400-03
Chr05	irgsp1_rep	five_prime_UTR	2977361	2977570	.	-	.	Parent=Os05t0151400-03
Chr05	irgsp1_rep	CDS	2977049	2977360	.	-	0	Parent=Os05t0151400-03
Chr05	irgsp1_rep	CDS	2973914	2976958	.	-	0	Parent=Os05t0151400-03
Chr05	irgsp1_rep	three_prime_UTR	2973691	2973913	.	-	.	Parent=Os05t0151400-03
Chr05	irgsp1_rep	mRNA	2987591	2989733	.	+	.	ID=Os05t0151700-00;Name=Os05t0151700-00;Locus_id=Os05g0151700;Note=Conserved hypothetical protein.;Transcript_evidence=CT836412 (DDBJ%2C Best hit);ORF_evidence=B8AY54 (UniProt);TENOR=Os05t0151700-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	2987591	2987696	.	+	.	Parent=Os05t0151700-00
Chr05	irgsp1_rep	five_prime_UTR	2987938	2988187	.	+	.	Parent=Os05t0151700-00
Chr05	irgsp1_rep	CDS	2988188	2988265	.	+	0	Parent=Os05t0151700-00
Chr05	irgsp1_rep	three_prime_UTR	2988266	2988733	.	+	.	Parent=Os05t0151700-00
Chr05	irgsp1_rep	three_prime_UTR	2989504	2989733	.	+	.	Parent=Os05t0151700-00
Chr05	irgsp1_rep	mRNA	3008647	3012723	.	-	.	ID=Os05t0152201-01;Name=Os05t0152201-01;Locus_id=Os05g0152201;Note=Conserved hypothetical protein.;Transcript_evidence=AK241159 (DDBJ%2C Best hit);ORF_evidence=NP_001174222.1 (RefSeq);NIAS_FLcDNA=J065115D03;TENOR=Os05t0152201-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	3012472	3012723	.	-	.	Parent=Os05t0152201-01
Chr05	irgsp1_rep	CDS	3012358	3012471	.	-	0	Parent=Os05t0152201-01
Chr05	irgsp1_rep	CDS	3012218	3012268	.	-	0	Parent=Os05t0152201-01
Chr05	irgsp1_rep	CDS	3010570	3010596	.	-	0	Parent=Os05t0152201-01
Chr05	irgsp1_rep	three_prime_UTR	3010521	3010569	.	-	.	Parent=Os05t0152201-01
Chr05	irgsp1_rep	three_prime_UTR	3008647	3009363	.	-	.	Parent=Os05t0152201-01
Chr05	irgsp1_rep	mRNA	3009481	3010285	.	-	.	ID=Os05t0152266-00;Name=Os05t0152266-00;Locus_id=Os05g0152266;Note=Hypothetical gene.;Transcript_evidence=EU943470 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0152266-00;KEGG=Os05t0152266-00
Chr05	irgsp1_rep	five_prime_UTR	3009979	3010285	.	-	.	Parent=Os05t0152266-00
Chr05	irgsp1_rep	CDS	3009931	3009978	.	-	0	Parent=Os05t0152266-00
Chr05	irgsp1_rep	CDS	3009672	3009878	.	-	0	Parent=Os05t0152266-00
Chr05	irgsp1_rep	three_prime_UTR	3009481	3009671	.	-	.	Parent=Os05t0152266-00
Chr05	irgsp1_rep	mRNA	3010795	3011863	.	-	.	ID=Os05t0152366-00;Name=Os05t0152366-00;Locus_id=Os05g0152366;Note=Non-protein coding transcript.;Transcript_evidence=EU943470 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0152366-00
Chr05	irgsp1_rep	exon	3011562	3011863	.	-	.	Parent=Os05t0152366-00
Chr05	irgsp1_rep	exon	3011132	3011510	.	-	.	Parent=Os05t0152366-00
Chr05	irgsp1_rep	exon	3010795	3011060	.	-	.	Parent=Os05t0152366-00
Chr05	irgsp1_rep	mRNA	3030704	3033663	.	+	.	ID=Os05t0152400-01;Name=Os05t0152400-01;Locus_id=Os05g0152400;Note=Hypothetical conserved gene.;Transcript_evidence=AK288958 (DDBJ%2C Best hit);ORF_evidence=Q65XQ1 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: acetylglucosaminyltransferase activity (GO:0008375);InterPro=Glycosyl transferase%2C family 14 (IPR003406);NIAS_FLcDNA=J090084E06;TENOR=Os05t0152400-01;KEGG=Os05t0152400-01
Chr05	irgsp1_rep	five_prime_UTR	3030704	3030830	.	+	.	Parent=Os05t0152400-01
Chr05	irgsp1_rep	CDS	3030831	3031556	.	+	0	Parent=Os05t0152400-01
Chr05	irgsp1_rep	three_prime_UTR	3031557	3033663	.	+	.	Parent=Os05t0152400-01
Chr05	irgsp1_rep	mRNA	3036073	3039680	.	+	.	ID=Os05t0152600-00;Name=Os05t0152600-00;Locus_id=Os05g0152600;Note=Seven-in-absentia protein%2C sina domain containing protein.;Transcript_evidence=tplb0003d14 (Wheat FLcDNA);ORF_evidence=Q65XP9 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Biological Process: multicellular organismal development (GO:0007275),Biological Process: protein ubiquitination (GO:0016567),Cellular Component: nucleus (GO:0005634),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Seven-in-absentia protein%2C sina (IPR004162),TRAF-like (IPR008974),Zinc finger%2C SIAH-type (IPR013010),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Seven In Absentia Homolog-type (IPR013323),Seven-in-absentia protein%2C TRAF-like domain (IPR018121);TENOR=Os05t0152600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	3036073	3036894	.	+	0	Parent=Os05t0152600-00
Chr05	irgsp1_rep	CDS	3038958	3039680	.	+	0	Parent=Os05t0152600-00
Chr05	irgsp1_rep	mRNA	3042813	3043112	.	+	.	ID=Os05t0152700-00;Name=Os05t0152700-00;Locus_id=Os05g0152700;Note=TRAF-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8AY56 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=TRAF-like (IPR008974);TENOR=Os05t0152700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	3042813	3043112	.	+	0	Parent=Os05t0152700-00
Chr05	irgsp1_rep	mRNA	3045853	3047055	.	+	.	ID=Os05t0152900-00;Name=Os05t0152900-00;Locus_id=Os05g0152900;Note=Seven-in-absentia protein%2C sina domain containing protein.;Transcript_evidence=AK371188 (DDBJ);ORF_evidence=NP_001054675.2 (RefSeq);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Biological Process: multicellular organismal development (GO:0007275),Biological Process: protein ubiquitination (GO:0016567),Cellular Component: nucleus (GO:0005634),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Seven-in-absentia protein%2C sina (IPR004162),TRAF-like (IPR008974),Zinc finger%2C SIAH-type (IPR013010),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Seven In Absentia Homolog-type (IPR013323),Seven-in-absentia protein%2C TRAF-like domain (IPR018121);TENOR=Os05t0152900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	3045853	3047055	.	+	0	Parent=Os05t0152900-00
Chr05	irgsp1_rep	mRNA	3050934	3056996	.	+	.	ID=Os05t0153000-01;Name=Os05t0153000-01;Locus_id=Os05g0153000;Oryzabase Gene Symbol Synonym(s)=VLN1%2C OsVLN1%2C Os VLN1;Oryzabase Gene Name Synonym(s)=VILLIN1%2C VILLIN 1;Note=Gelsolin family protein.;Transcript_evidence=AK073497 (DDBJ%2C Best hit);ORF_evidence=B8AY58 (UniProt);GO=Molecular Function: actin binding (GO:0003779);InterPro=Gelsolin (IPR007122),Gelsolin domain (IPR007123);NIAS_FLcDNA=J033045E20;Oryzabase=20284;Expression=AK073497;TENOR=Os05t0153000-01;KEGG=Os05t0153000-01
Chr05	irgsp1_rep	five_prime_UTR	3050934	3051207	.	+	.	Parent=Os05t0153000-01
Chr05	irgsp1_rep	CDS	3051208	3051251	.	+	0	Parent=Os05t0153000-01
Chr05	irgsp1_rep	CDS	3051760	3051859	.	+	1	Parent=Os05t0153000-01
Chr05	irgsp1_rep	CDS	3051950	3052018	.	+	0	Parent=Os05t0153000-01
Chr05	irgsp1_rep	CDS	3052120	3052356	.	+	0	Parent=Os05t0153000-01
Chr05	irgsp1_rep	CDS	3052441	3052618	.	+	0	Parent=Os05t0153000-01
Chr05	irgsp1_rep	CDS	3052703	3052838	.	+	2	Parent=Os05t0153000-01
Chr05	irgsp1_rep	CDS	3052925	3053087	.	+	1	Parent=Os05t0153000-01
Chr05	irgsp1_rep	CDS	3053354	3053504	.	+	0	Parent=Os05t0153000-01
Chr05	irgsp1_rep	CDS	3053589	3053674	.	+	2	Parent=Os05t0153000-01
Chr05	irgsp1_rep	CDS	3053745	3053900	.	+	0	Parent=Os05t0153000-01
Chr05	irgsp1_rep	CDS	3054188	3054256	.	+	0	Parent=Os05t0153000-01
Chr05	irgsp1_rep	CDS	3054347	3054415	.	+	0	Parent=Os05t0153000-01
Chr05	irgsp1_rep	CDS	3054523	3054660	.	+	0	Parent=Os05t0153000-01
Chr05	irgsp1_rep	CDS	3054794	3054922	.	+	0	Parent=Os05t0153000-01
Chr05	irgsp1_rep	CDS	3055022	3055169	.	+	0	Parent=Os05t0153000-01
Chr05	irgsp1_rep	CDS	3055252	3055262	.	+	2	Parent=Os05t0153000-01
Chr05	irgsp1_rep	CDS	3055608	3055748	.	+	0	Parent=Os05t0153000-01
Chr05	irgsp1_rep	CDS	3055837	3055965	.	+	0	Parent=Os05t0153000-01
Chr05	irgsp1_rep	CDS	3056233	3056295	.	+	0	Parent=Os05t0153000-01
Chr05	irgsp1_rep	CDS	3056416	3056748	.	+	0	Parent=Os05t0153000-01
Chr05	irgsp1_rep	three_prime_UTR	3056749	3056996	.	+	.	Parent=Os05t0153000-01
Chr05	irgsp1_rep	mRNA	3051070	3056840	.	+	.	ID=Os05t0153000-02;Name=Os05t0153000-02;Locus_id=Os05g0153000;Oryzabase Gene Symbol Synonym(s)=VLN1%2C OsVLN1%2C Os VLN1;Oryzabase Gene Name Synonym(s)=VILLIN1%2C VILLIN 1;Note=Gelsolin family protein.;Transcript_evidence=AK072095 (DDBJ%2C Best hit);ORF_evidence=B8AY58 (UniProt);GO=Molecular Function: actin binding (GO:0003779);InterPro=Gelsolin (IPR007122),Gelsolin domain (IPR007123);NIAS_FLcDNA=J013116C18;Oryzabase=20284;Expression=AK072095;TENOR=Os05t0153000-02;KEGG=Os05t0153000-02
Chr05	irgsp1_rep	five_prime_UTR	3051070	3051207	.	+	.	Parent=Os05t0153000-02
Chr05	irgsp1_rep	CDS	3051208	3051251	.	+	0	Parent=Os05t0153000-02
Chr05	irgsp1_rep	CDS	3051760	3051859	.	+	1	Parent=Os05t0153000-02
Chr05	irgsp1_rep	CDS	3051950	3052018	.	+	0	Parent=Os05t0153000-02
Chr05	irgsp1_rep	CDS	3052120	3052356	.	+	0	Parent=Os05t0153000-02
Chr05	irgsp1_rep	CDS	3052441	3052618	.	+	0	Parent=Os05t0153000-02
Chr05	irgsp1_rep	CDS	3052703	3052838	.	+	2	Parent=Os05t0153000-02
Chr05	irgsp1_rep	CDS	3052925	3053087	.	+	1	Parent=Os05t0153000-02
Chr05	irgsp1_rep	CDS	3053354	3053504	.	+	0	Parent=Os05t0153000-02
Chr05	irgsp1_rep	CDS	3053589	3053674	.	+	2	Parent=Os05t0153000-02
Chr05	irgsp1_rep	CDS	3053745	3053900	.	+	0	Parent=Os05t0153000-02
Chr05	irgsp1_rep	CDS	3054188	3054256	.	+	0	Parent=Os05t0153000-02
Chr05	irgsp1_rep	CDS	3054347	3054415	.	+	0	Parent=Os05t0153000-02
Chr05	irgsp1_rep	CDS	3054523	3054660	.	+	0	Parent=Os05t0153000-02
Chr05	irgsp1_rep	CDS	3054794	3054922	.	+	0	Parent=Os05t0153000-02
Chr05	irgsp1_rep	CDS	3055022	3055169	.	+	0	Parent=Os05t0153000-02
Chr05	irgsp1_rep	CDS	3055252	3055262	.	+	2	Parent=Os05t0153000-02
Chr05	irgsp1_rep	CDS	3055608	3055748	.	+	0	Parent=Os05t0153000-02
Chr05	irgsp1_rep	CDS	3055837	3055965	.	+	0	Parent=Os05t0153000-02
Chr05	irgsp1_rep	CDS	3056233	3056295	.	+	0	Parent=Os05t0153000-02
Chr05	irgsp1_rep	CDS	3056416	3056748	.	+	0	Parent=Os05t0153000-02
Chr05	irgsp1_rep	three_prime_UTR	3056749	3056840	.	+	.	Parent=Os05t0153000-02
Chr05	irgsp1_rep	mRNA	3061080	3061868	.	+	.	ID=Os05t0153132-00;Name=Os05t0153132-00;Locus_id=Os05g0153132;CGSNL Gene Symbol=UBC36;CGSNL Gene Name=UBIQUITIN-CONJUGATING ENZYME 36;Oryzabase Gene Symbol Synonym(s)=OsUBC36;Oryzabase Gene Name Synonym(s)=Ubiquitin-conjugating enzyme 36;Note=Similar to UBC23 (UBIQUITIN-CONJUGATING ENZYME 23)%3B small conjugating protein ligase/ ubiquitin-protein ligase.;Transcript_evidence=BT087279 (DDBJ);ORF_evidence=NP_179284.1 (RefSeq);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135);Oryzabase=19570;TENOR=Os05t0153132-00
Chr05	irgsp1_rep	CDS	3061080	3061868	.	+	0	Parent=Os05t0153132-00
Chr05	irgsp1_rep	mRNA	3062853	3067586	.	+	.	ID=Os05t0153200-01;Name=Os05t0153200-01;Locus_id=Os05g0153200;Oryzabase Gene Symbol Synonym(s)=OsFDML4%2C FDML4;Oryzabase Gene Name Synonym(s)=Region of unknown function XH domain-containing protein%2C FACTOR OF DNA METHYLATION LIKE 4;Note=Uncharacterised domain XH domain containing protein.;Transcript_evidence=AK063522 (DDBJ%2C Best hit);ORF_evidence=B9FMI5 (UniProt);InterPro=Uncharacterised domain XH (IPR005379),XS domain (IPR005380),Zinc finger-XS domain (IPR005381);NIAS_FLcDNA=001-116-H09;Oryzabase=22037;TENOR=Os05t0153200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	3062853	3062964	.	+	.	Parent=Os05t0153200-01
Chr05	irgsp1_rep	CDS	3062965	3063029	.	+	0	Parent=Os05t0153200-01
Chr05	irgsp1_rep	CDS	3063967	3064838	.	+	1	Parent=Os05t0153200-01
Chr05	irgsp1_rep	CDS	3064988	3065169	.	+	2	Parent=Os05t0153200-01
Chr05	irgsp1_rep	CDS	3065602	3065691	.	+	0	Parent=Os05t0153200-01
Chr05	irgsp1_rep	CDS	3065784	3066071	.	+	0	Parent=Os05t0153200-01
Chr05	irgsp1_rep	CDS	3066172	3066393	.	+	0	Parent=Os05t0153200-01
Chr05	irgsp1_rep	CDS	3067030	3067257	.	+	0	Parent=Os05t0153200-01
Chr05	irgsp1_rep	three_prime_UTR	3067258	3067586	.	+	.	Parent=Os05t0153200-01
Chr05	irgsp1_rep	mRNA	3069666	3074392	.	-	.	ID=Os05t0153300-00;Name=Os05t0153300-00;Locus_id=Os05g0153300;Note=Lipase%2C class 3 domain containing protein.;Transcript_evidence=FP095999 (DDBJ);ORF_evidence=NP_001054678.2 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921);TENOR=Os05t0153300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	3074029	3074392	.	-	0	Parent=Os05t0153300-00
Chr05	irgsp1_rep	CDS	3072707	3073005	.	-	2	Parent=Os05t0153300-00
Chr05	irgsp1_rep	CDS	3071145	3071178	.	-	0	Parent=Os05t0153300-00
Chr05	irgsp1_rep	CDS	3069954	3070848	.	-	2	Parent=Os05t0153300-00
Chr05	irgsp1_rep	CDS	3069808	3069829	.	-	1	Parent=Os05t0153300-00
Chr05	irgsp1_rep	three_prime_UTR	3069666	3069807	.	-	.	Parent=Os05t0153300-00
Chr05	irgsp1_rep	mRNA	3083807	3085504	.	+	.	ID=Os05t0153400-01;Name=Os05t0153400-01;Locus_id=Os05g0153400;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK108071 (DDBJ%2C Best hit);ORF_evidence=B8AY60 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-138-C07;Expression=AK108071;TENOR=Os05t0153400-01;KEGG=Os05t0153400-01
Chr05	irgsp1_rep	five_prime_UTR	3083807	3083947	.	+	.	Parent=Os05t0153400-01
Chr05	irgsp1_rep	CDS	3083948	3085471	.	+	0	Parent=Os05t0153400-01
Chr05	irgsp1_rep	three_prime_UTR	3085472	3085504	.	+	.	Parent=Os05t0153400-01
Chr05	irgsp1_rep	mRNA	3094201	3095030	.	+	.	ID=Os05t0153500-00;Name=Os05t0153500-00;Locus_id=Os05g0153500;Note=Similar to Trehalose-phosphatase family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QQ60 (UniProt);GO=Biological Process: trehalose biosynthetic process (GO:0005992),Molecular Function: catalytic activity (GO:0003824);InterPro=Trehalose-phosphatase (IPR003337),HAD-like domain (IPR023214);TENOR=Os05t0153500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	3094201	3094216	.	+	0	Parent=Os05t0153500-00
Chr05	irgsp1_rep	CDS	3094300	3094616	.	+	2	Parent=Os05t0153500-00
Chr05	irgsp1_rep	CDS	3094706	3094735	.	+	0	Parent=Os05t0153500-00
Chr05	irgsp1_rep	CDS	3094887	3095030	.	+	0	Parent=Os05t0153500-00
Chr05	irgsp1_rep	mRNA	3096123	3096819	.	-	.	ID=Os05t0153901-00;Name=Os05t0153901-00;Locus_id=Os05g0153901;Note=Similar to PH domain containing protein.;Transcript_evidence=CT828021 (DDBJ%2C Secondary hit);ORF_evidence=NP_001152545.1 (RefSeq);TENOR=Os05t0153901-00;KEGG=Os05t0153901-00
Chr05	irgsp1_rep	five_prime_UTR	3096754	3096819	.	-	.	Parent=Os05t0153901-00
Chr05	irgsp1_rep	CDS	3096553	3096753	.	-	0	Parent=Os05t0153901-00
Chr05	irgsp1_rep	CDS	3096314	3096355	.	-	0	Parent=Os05t0153901-00
Chr05	irgsp1_rep	three_prime_UTR	3096123	3096313	.	-	.	Parent=Os05t0153901-00
Chr05	irgsp1_rep	mRNA	3157011	3157400	.	-	.	ID=Os05t0154300-00;Name=Os05t0154300-00;Locus_id=Os05g0154300;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001174225.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);TENOR=Os05t0154300-00;KEGG=Os05t0154300-00
Chr05	irgsp1_rep	CDS	3157011	3157400	.	-	0	Parent=Os05t0154300-00
Chr05	irgsp1_rep	mRNA	3181800	3188092	.	-	.	ID=Os05t0154500-01;Name=Os05t0154500-01;Locus_id=Os05g0154500;Note=Spc97/Spc98 family protein.;Transcript_evidence=AK119462 (DDBJ%2C Best hit);ORF_evidence=XP_002320339.1 (RefSeq);GO=Biological Process: microtubule cytoskeleton organization (GO:0000226),Cellular Component: spindle pole (GO:0000922),Cellular Component: microtubule organizing center (GO:0005815);InterPro=Spc97/Spc98 (IPR007259);NIAS_FLcDNA=001-133-E11;Expression=AK119462;TENOR=Os05t0154500-01;KEGG=Os05t0154500-01
Chr05	irgsp1_rep	five_prime_UTR	3187982	3188092	.	-	.	Parent=Os05t0154500-01
Chr05	irgsp1_rep	CDS	3187797	3187981	.	-	0	Parent=Os05t0154500-01
Chr05	irgsp1_rep	CDS	3186802	3187093	.	-	1	Parent=Os05t0154500-01
Chr05	irgsp1_rep	CDS	3186490	3186626	.	-	0	Parent=Os05t0154500-01
Chr05	irgsp1_rep	CDS	3186126	3186224	.	-	1	Parent=Os05t0154500-01
Chr05	irgsp1_rep	CDS	3185539	3185659	.	-	1	Parent=Os05t0154500-01
Chr05	irgsp1_rep	CDS	3185169	3185441	.	-	0	Parent=Os05t0154500-01
Chr05	irgsp1_rep	CDS	3184943	3185023	.	-	0	Parent=Os05t0154500-01
Chr05	irgsp1_rep	CDS	3184777	3184860	.	-	0	Parent=Os05t0154500-01
Chr05	irgsp1_rep	CDS	3184562	3184648	.	-	0	Parent=Os05t0154500-01
Chr05	irgsp1_rep	CDS	3184255	3184310	.	-	0	Parent=Os05t0154500-01
Chr05	irgsp1_rep	CDS	3183971	3184156	.	-	1	Parent=Os05t0154500-01
Chr05	irgsp1_rep	CDS	3183581	3183806	.	-	1	Parent=Os05t0154500-01
Chr05	irgsp1_rep	CDS	3182986	3183074	.	-	0	Parent=Os05t0154500-01
Chr05	irgsp1_rep	CDS	3182566	3182719	.	-	1	Parent=Os05t0154500-01
Chr05	irgsp1_rep	CDS	3182334	3182456	.	-	0	Parent=Os05t0154500-01
Chr05	irgsp1_rep	CDS	3181934	3182005	.	-	0	Parent=Os05t0154500-01
Chr05	irgsp1_rep	three_prime_UTR	3181800	3181933	.	-	.	Parent=Os05t0154500-01
Chr05	irgsp1_rep	mRNA	3189852	3195771	.	-	.	ID=Os05t0154600-01;Name=Os05t0154600-01;Locus_id=Os05g0154600;RAP-DB Gene Symbol Synonym(s)=APIP6;RAP-DB Gene Name Synonym(s)=AvrPiz-t Interacting Protein 6;Oryzabase Gene Symbol Synonym(s)=APIP6;Oryzabase Gene Name Synonym(s)=AvrPiz-t Interacting Protein 6;Note=RING E3 ubiquitin ligase%2C Target of the M. oryzae effector AvrPiz-t%2C Component of pathogen-associated molecular pattern-triggered immunity;Transcript_evidence=AK111816 (truncated),Inferred from literature;ORF_evidence=Q0DKM6;InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841);NIAS_FLcDNA=J013147K05 (truncated);Manual Curation=August 4%2C 2020;Literature_PMID=23204406;Oryzabase=11676;Expression=AK111816;TENOR=Os05t0154600-01;KEGG=Os05t0154600-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	3195563	3195771	.	-	.	Parent=Os05t0154600-01
Chr05	irgsp1_rep	CDS	3195376	3195562	.	-	0	Parent=Os05t0154600-01
Chr05	irgsp1_rep	CDS	3193532	3193701	.	-	2	Parent=Os05t0154600-01
Chr05	irgsp1_rep	CDS	3192611	3192669	.	-	0	Parent=Os05t0154600-01
Chr05	irgsp1_rep	CDS	3191542	3191570	.	-	1	Parent=Os05t0154600-01
Chr05	irgsp1_rep	CDS	3191051	3191459	.	-	2	Parent=Os05t0154600-01
Chr05	irgsp1_rep	CDS	3190075	3190540	.	-	1	Parent=Os05t0154600-01
Chr05	irgsp1_rep	three_prime_UTR	3189852	3190074	.	-	.	Parent=Os05t0154600-01
Chr05	irgsp1_rep	mRNA	3189795	3190252	.	-	.	ID=Os05t0154600-02;Name=Os05t0154600-02;Locus_id=Os05g0154600;Oryzabase Gene Symbol Synonym(s)=APIP6;Oryzabase Gene Name Synonym(s)=AvrPiz-t Interacting Protein 6;Note=Similar to VIP2 protein.;Transcript_evidence=AK104006 (DDBJ%2C Best hit);ORF_evidence=Q9M4C5 (UniProt);NIAS_FLcDNA=001-002-F10;Oryzabase=11676;Expression=AK104006;TENOR=Os05t0154600-02;KEGG=Os05t0154600-02
Chr05	irgsp1_rep	five_prime_UTR	3190252	3190252	.	-	.	Parent=Os05t0154600-02
Chr05	irgsp1_rep	CDS	3190075	3190251	.	-	0	Parent=Os05t0154600-02
Chr05	irgsp1_rep	three_prime_UTR	3189795	3190074	.	-	.	Parent=Os05t0154600-02
Chr05	irgsp1_rep	mRNA	3203306	3209681	.	+	.	ID=Os05t0154700-01;Name=Os05t0154700-01;Locus_id=Os05g0154700;RAP-DB Gene Symbol Synonym(s)=SRS3%2C SAR1%2C SGL;RAP-DB Gene Name Synonym(s)=SMALL AND ROUND SEED 3%2C small and round seed 3%2C small and round grains 1%2C SRS3/OsKINESIN-13A%2C OsKinesin-13A%2C Short Grain Length;CGSNL Gene Symbol=SRS3;CGSNL Gene Name=SMALL AND ROUND SEED 3;Oryzabase Gene Symbol Synonym(s)=OsSRS3%2C SAR1%2C OsSAR1%2C KIN13A%2C OsKIN13A;Oryzabase Gene Name Synonym(s)=small and round seed 3%2C small and round grains 1%2C SRS3/OsKINESIN-13A%2C OsKinesin-13A%2C OsKinesin13A%2C Kinesin13A%2C Kinesin 13A%2C Kinesin-13A;Note=Kinesin 13 protein%2C Regulation of grain length and plant height;Transcript_evidence=AB531488 (Taichung 65),AK064328 (truncated);ORF_evidence=B9FMJ3;GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524),Molecular Function: microtubule binding (GO:0008017);InterPro=Kinesin motor domain (IPR001752),P-loop containing nucleoside triphosphate hydrolase (IPR027417),Kinesin motor domain%2C conserved site (IPR019821);NIAS_FLcDNA=002-107-F08 (truncated);Manual Curation=January 13%2C 2017;Literature_PMID=24170341,20587735;Oryzabase=15164;Expression=AK064328;TENOR=Os05t0154700-01;KEGG=Os05t0154700-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	3203306	3203506	.	+	0	Parent=Os05t0154700-01
Chr05	irgsp1_rep	CDS	3204093	3204326	.	+	0	Parent=Os05t0154700-01
Chr05	irgsp1_rep	CDS	3204576	3204749	.	+	0	Parent=Os05t0154700-01
Chr05	irgsp1_rep	CDS	3204846	3204950	.	+	0	Parent=Os05t0154700-01
Chr05	irgsp1_rep	CDS	3205670	3205747	.	+	0	Parent=Os05t0154700-01
Chr05	irgsp1_rep	CDS	3206415	3206496	.	+	0	Parent=Os05t0154700-01
Chr05	irgsp1_rep	CDS	3206915	3207077	.	+	2	Parent=Os05t0154700-01
Chr05	irgsp1_rep	CDS	3207496	3207831	.	+	1	Parent=Os05t0154700-01
Chr05	irgsp1_rep	CDS	3207907	3208125	.	+	1	Parent=Os05t0154700-01
Chr05	irgsp1_rep	CDS	3208222	3208840	.	+	1	Parent=Os05t0154700-01
Chr05	irgsp1_rep	CDS	3208919	3208984	.	+	0	Parent=Os05t0154700-01
Chr05	irgsp1_rep	CDS	3209499	3209681	.	+	0	Parent=Os05t0154700-01
Chr05	irgsp1_rep	mRNA	3210669	3213944	.	+	.	ID=Os05t0154800-01;Name=Os05t0154800-01;Locus_id=Os05g0154800;Note=Similar to U1snRNP-specific protein%2C U1A.;Transcript_evidence=AK102716 (DDBJ%2C Best hit);ORF_evidence=Q41498 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033105D18;Expression=AK102716;TENOR=Os05t0154800-01;KEGG=Os05t0154800-01
Chr05	irgsp1_rep	five_prime_UTR	3210669	3210715	.	+	.	Parent=Os05t0154800-01
Chr05	irgsp1_rep	CDS	3210716	3210827	.	+	0	Parent=Os05t0154800-01
Chr05	irgsp1_rep	CDS	3211368	3211540	.	+	2	Parent=Os05t0154800-01
Chr05	irgsp1_rep	CDS	3211862	3211955	.	+	0	Parent=Os05t0154800-01
Chr05	irgsp1_rep	CDS	3212749	3212840	.	+	2	Parent=Os05t0154800-01
Chr05	irgsp1_rep	CDS	3213542	3213832	.	+	0	Parent=Os05t0154800-01
Chr05	irgsp1_rep	three_prime_UTR	3213833	3213944	.	+	.	Parent=Os05t0154800-01
Chr05	irgsp1_rep	mRNA	3210720	3213828	.	-	.	ID=Os05t0154850-00;Name=Os05t0154850-00;Locus_id=Os05g0154850;Note=Hypothetical protein.;Transcript_evidence=BT019068 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0154850-00
Chr05	irgsp1_rep	five_prime_UTR	3213570	3213828	.	-	.	Parent=Os05t0154850-00
Chr05	irgsp1_rep	five_prime_UTR	3212041	3212063	.	-	.	Parent=Os05t0154850-00
Chr05	irgsp1_rep	CDS	3211857	3212040	.	-	0	Parent=Os05t0154850-00
Chr05	irgsp1_rep	CDS	3211371	3211535	.	-	2	Parent=Os05t0154850-00
Chr05	irgsp1_rep	CDS	3210720	3210837	.	-	2	Parent=Os05t0154850-00
Chr05	irgsp1_rep	mRNA	3214214	3216343	.	-	.	ID=Os05t0154900-01;Name=Os05t0154900-01;Locus_id=Os05g0154900;Oryzabase Gene Symbol Synonym(s)=OsMed28_1%2C Med28_1;Oryzabase Gene Name Synonym(s)=Mediator 28_1;Note=Conserved hypothetical protein.;Transcript_evidence=AK070869 (DDBJ%2C Best hit);ORF_evidence=B8AY68 (UniProt);NIAS_FLcDNA=J023070E07;Oryzabase=20985;Expression=AK070869;TENOR=Os05t0154900-01;KEGG=Os05t0154900-01
Chr05	irgsp1_rep	five_prime_UTR	3216273	3216343	.	-	.	Parent=Os05t0154900-01
Chr05	irgsp1_rep	CDS	3216080	3216272	.	-	0	Parent=Os05t0154900-01
Chr05	irgsp1_rep	CDS	3215569	3215681	.	-	2	Parent=Os05t0154900-01
Chr05	irgsp1_rep	CDS	3214575	3214709	.	-	0	Parent=Os05t0154900-01
Chr05	irgsp1_rep	three_prime_UTR	3214214	3214574	.	-	.	Parent=Os05t0154900-01
Chr05	irgsp1_rep	mRNA	3220016	3228089	.	-	.	ID=Os05t0155000-01;Name=Os05t0155000-01;Locus_id=Os05g0155000;Note=Similar to Protein MFP-b.;Transcript_evidence=AK102420 (DDBJ%2C Best hit);ORF_evidence=NP_001152306.1 (RefSeq);GO=Biological Process: fatty acid metabolic process (GO:0006631),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: 3-hydroxyacyl-CoA dehydrogenase activity (GO:0003857),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: coenzyme binding (GO:0050662);InterPro=Crotonase%2C core (IPR001753),3-hydroxyacyl-CoA dehydrogenase%2C C-terminal (IPR006108),3-hydroxyacyl-CoA dehydrogenase%2C NAD binding (IPR006176),3-hydroxyacyl-CoA dehydrogenase%2C conserved site (IPR006180),6-phosphogluconate dehydrogenase%2C C-terminal-like (IPR008927),Dehydrogenase%2C multihelical (IPR013328),NAD(P)-binding domain (IPR016040),Enoyl-CoA hydratase/isomerase%2C conserved site (IPR018376);NIAS_FLcDNA=J033093D14;Expression=AK102420;TENOR=Os05t0155000-01;KEGG=Os05t0155000-01
Chr05	irgsp1_rep	five_prime_UTR	3227856	3228089	.	-	.	Parent=Os05t0155000-01
Chr05	irgsp1_rep	CDS	3227759	3227855	.	-	0	Parent=Os05t0155000-01
Chr05	irgsp1_rep	CDS	3225517	3225588	.	-	2	Parent=Os05t0155000-01
Chr05	irgsp1_rep	CDS	3225322	3225387	.	-	2	Parent=Os05t0155000-01
Chr05	irgsp1_rep	CDS	3225175	3225231	.	-	2	Parent=Os05t0155000-01
Chr05	irgsp1_rep	CDS	3224368	3224435	.	-	2	Parent=Os05t0155000-01
Chr05	irgsp1_rep	CDS	3224209	3224290	.	-	0	Parent=Os05t0155000-01
Chr05	irgsp1_rep	CDS	3223935	3223990	.	-	2	Parent=Os05t0155000-01
Chr05	irgsp1_rep	CDS	3223540	3223842	.	-	0	Parent=Os05t0155000-01
Chr05	irgsp1_rep	CDS	3223312	3223398	.	-	0	Parent=Os05t0155000-01
Chr05	irgsp1_rep	CDS	3222989	3223163	.	-	0	Parent=Os05t0155000-01
Chr05	irgsp1_rep	CDS	3222760	3222885	.	-	2	Parent=Os05t0155000-01
Chr05	irgsp1_rep	CDS	3222504	3222663	.	-	2	Parent=Os05t0155000-01
Chr05	irgsp1_rep	CDS	3222175	3222429	.	-	1	Parent=Os05t0155000-01
Chr05	irgsp1_rep	CDS	3221692	3221813	.	-	1	Parent=Os05t0155000-01
Chr05	irgsp1_rep	CDS	3221448	3221569	.	-	2	Parent=Os05t0155000-01
Chr05	irgsp1_rep	CDS	3220853	3221001	.	-	0	Parent=Os05t0155000-01
Chr05	irgsp1_rep	CDS	3220530	3220668	.	-	1	Parent=Os05t0155000-01
Chr05	irgsp1_rep	CDS	3220364	3220402	.	-	0	Parent=Os05t0155000-01
Chr05	irgsp1_rep	three_prime_UTR	3220016	3220363	.	-	.	Parent=Os05t0155000-01
Chr05	irgsp1_rep	mRNA	3230466	3232571	.	-	.	ID=Os05t0155050-00;Name=Os05t0155050-00;Locus_id=Os05g0155050;Note=Hypothetical gene.;Transcript_evidence=BT019314 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0155050-00
Chr05	irgsp1_rep	five_prime_UTR	3232404	3232571	.	-	.	Parent=Os05t0155050-00
Chr05	irgsp1_rep	five_prime_UTR	3231224	3231401	.	-	.	Parent=Os05t0155050-00
Chr05	irgsp1_rep	CDS	3231217	3231223	.	-	0	Parent=Os05t0155050-00
Chr05	irgsp1_rep	CDS	3230950	3231085	.	-	2	Parent=Os05t0155050-00
Chr05	irgsp1_rep	CDS	3230466	3230554	.	-	1	Parent=Os05t0155050-00
Chr05	irgsp1_rep	mRNA	3230312	3232921	.	+	.	ID=Os05t0155100-01;Name=Os05t0155100-01;Locus_id=Os05g0155100;CGSNL Gene Symbol=RPL18;CGSNL Gene Name=RIBOSOMAL PROTEIN L18;Oryzabase Gene Symbol Synonym(s)=rpl18;Oryzabase Gene Name Synonym(s)=ribosomal protein L18%2C 60S ribosomal protein L18;Note=Similar to 60S ribosomal protein L18.;Transcript_evidence=AK120877 (DDBJ%2C Best hit),AK061929 (DDBJ%2C Best hit),AK102810 (DDBJ%2C Best hit);ORF_evidence=A2Y0K0 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L18e (IPR000039),Ribosomal protein L18e/L15P (IPR021131),Ribosomal protein L18e%2C conserved site (IPR021132);NIAS_FLcDNA=J023027I12,001-042-C09,J033108L02;Oryzabase=16008;TENOR=Os05t0155100-01
Chr05	irgsp1_rep	five_prime_UTR	3230312	3230374	.	+	.	Parent=Os05t0155100-01
Chr05	irgsp1_rep	CDS	3230375	3230377	.	+	0	Parent=Os05t0155100-01
Chr05	irgsp1_rep	CDS	3230467	3230556	.	+	0	Parent=Os05t0155100-01
Chr05	irgsp1_rep	CDS	3230952	3231080	.	+	0	Parent=Os05t0155100-01
Chr05	irgsp1_rep	CDS	3231210	3231395	.	+	0	Parent=Os05t0155100-01
Chr05	irgsp1_rep	CDS	3232397	3232555	.	+	0	Parent=Os05t0155100-01
Chr05	irgsp1_rep	three_prime_UTR	3232556	3232921	.	+	.	Parent=Os05t0155100-01
Chr05	irgsp1_rep	mRNA	3233024	3237383	.	-	.	ID=Os05t0155200-01;Name=Os05t0155200-01;Locus_id=Os05g0155200;CGSNL Gene Symbol=ERS2;CGSNL Gene Name=ETHYLENE RESPONSE SENSOR 2;Oryzabase Gene Symbol Synonym(s)=OS-ERS2%2C OsERS2%2C OsERS2a%2C OsERS2b%2C OsERS2c;Oryzabase Gene Name Synonym(s)=ETHYLENE RECEPTOR%2C ETHYLENE RESPONSE SENSOR2;Note=Similar to Ethylene receptor.;Transcript_evidence=AK111696 (DDBJ%2C Best hit);ORF_evidence=A1IIY0 (UniProt);GO=Biological Process: signal transduction (GO:0007165),Biological Process: peptidyl-histidine phosphorylation (GO:0018106),Cellular Component: membrane (GO:0016020),Molecular Function: two-component sensor activity (GO:0000155),Molecular Function: protein histidine kinase activity (GO:0004673),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=GAF (IPR003018),ATPase-like%2C ATP-binding domain (IPR003594),Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain (IPR003661),Signal transduction histidine kinase%2C core (IPR005467),Signal transduction histidine kinase%2C homodimeric (IPR009082);NIAS_FLcDNA=J023007F11;Oryzabase=9858;Expression=AK111696;TENOR=Os05t0155200-01;KEGG=Os05t0155200-01
Chr05	irgsp1_rep	five_prime_UTR	3236910	3237383	.	-	.	Parent=Os05t0155200-01
Chr05	irgsp1_rep	five_prime_UTR	3236404	3236472	.	-	.	Parent=Os05t0155200-01
Chr05	irgsp1_rep	CDS	3235495	3236403	.	-	0	Parent=Os05t0155200-01
Chr05	irgsp1_rep	CDS	3234884	3235252	.	-	0	Parent=Os05t0155200-01
Chr05	irgsp1_rep	CDS	3234488	3234766	.	-	0	Parent=Os05t0155200-01
Chr05	irgsp1_rep	three_prime_UTR	3234100	3234487	.	-	.	Parent=Os05t0155200-01
Chr05	irgsp1_rep	three_prime_UTR	3233024	3233987	.	-	.	Parent=Os05t0155200-01
Chr05	irgsp1_rep	mRNA	3233454	3235613	.	-	.	ID=Os05t0155200-02;Name=Os05t0155200-02;Locus_id=Os05g0155200;CGSNL Gene Symbol=ERS2;CGSNL Gene Name=ETHYLENE RESPONSE SENSOR 2;Oryzabase Gene Symbol Synonym(s)=OS-ERS2%2C OsERS2%2C OsERS2a%2C OsERS2b%2C OsERS2c;Oryzabase Gene Name Synonym(s)=ETHYLENE RECEPTOR%2C ETHYLENE RESPONSE SENSOR2;Note=Similar to Ethylene receptor-like protein (Fragment).;Transcript_evidence=AK111944 (DDBJ%2C Best hit);ORF_evidence=Q8GT97 (UniProt);GO=Biological Process: signal transduction (GO:0007165),Biological Process: phosphorylation (GO:0016310),Biological Process: peptidyl-histidine phosphorylation (GO:0018106),Cellular Component: membrane (GO:0016020),Molecular Function: two-component sensor activity (GO:0000155),Molecular Function: protein histidine kinase activity (GO:0004673),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=ATPase-like%2C ATP-binding domain (IPR003594),Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain (IPR003661),Signal transduction histidine kinase-related protein%2C C-terminal (IPR004358),Signal transduction histidine kinase%2C core (IPR005467),Signal transduction histidine kinase%2C homodimeric (IPR009082);NIAS_FLcDNA=001-022-C09;Oryzabase=9858;Expression=AK111944;TENOR=Os05t0155200-02;KEGG=Os05t0155200-02
Chr05	irgsp1_rep	five_prime_UTR	3235612	3235613	.	-	.	Parent=Os05t0155200-02
Chr05	irgsp1_rep	CDS	3235495	3235611	.	-	0	Parent=Os05t0155200-02
Chr05	irgsp1_rep	CDS	3234884	3235252	.	-	0	Parent=Os05t0155200-02
Chr05	irgsp1_rep	CDS	3234500	3234766	.	-	0	Parent=Os05t0155200-02
Chr05	irgsp1_rep	CDS	3234100	3234224	.	-	0	Parent=Os05t0155200-02
Chr05	irgsp1_rep	CDS	3233750	3233987	.	-	1	Parent=Os05t0155200-02
Chr05	irgsp1_rep	three_prime_UTR	3233454	3233749	.	-	.	Parent=Os05t0155200-02
Chr05	irgsp1_rep	mRNA	3233890	3236403	.	+	.	ID=Os05t0155250-00;Name=Os05t0155250-00;Locus_id=Os05g0155250;Note=Hypothetical protein.;Transcript_evidence=tplb0049a13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0155250-00
Chr05	irgsp1_rep	five_prime_UTR	3233890	3233985	.	+	.	Parent=Os05t0155250-00
Chr05	irgsp1_rep	five_prime_UTR	3234098	3234248	.	+	.	Parent=Os05t0155250-00
Chr05	irgsp1_rep	five_prime_UTR	3234529	3234793	.	+	.	Parent=Os05t0155250-00
Chr05	irgsp1_rep	five_prime_UTR	3234913	3235246	.	+	.	Parent=Os05t0155250-00
Chr05	irgsp1_rep	five_prime_UTR	3235489	3235915	.	+	.	Parent=Os05t0155250-00
Chr05	irgsp1_rep	CDS	3235916	3236251	.	+	0	Parent=Os05t0155250-00
Chr05	irgsp1_rep	three_prime_UTR	3236252	3236403	.	+	.	Parent=Os05t0155250-00
Chr05	irgsp1_rep	mRNA	3241344	3245075	.	+	.	ID=Os05t0155300-01;Name=Os05t0155300-01;Locus_id=Os05g0155300;CGSNL Gene Symbol=ISC15;CGSNL Gene Name=IRON-SULFUR CLUSTER PROTEIN 15;Oryzabase Gene Symbol Synonym(s)=OsISC15;Oryzabase Gene Name Synonym(s)=Iron-sulfur cluster protein 15;Note=Similar to HIRA interacting protein 5.;Transcript_evidence=AK069217 (DDBJ%2C Best hit);ORF_evidence=B8R1J6 (UniProt);GO=Biological Process: iron-sulfur cluster assembly (GO:0016226),Molecular Function: iron ion binding (GO:0005506),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=NIF system FeS cluster assembly%2C NifU%2C C-terminal (IPR001075),NIF system FeS cluster assembly%2C NifU-like scaffold%2C N-terminal (IPR014824),HIRA-interacting protein 5 (IPR017065);NIAS_FLcDNA=J023010L13;Oryzabase=13430;Expression=AK069217;TENOR=Os05t0155300-01;KEGG=Os05t0155300-01
Chr05	irgsp1_rep	five_prime_UTR	3241344	3241407	.	+	.	Parent=Os05t0155300-01
Chr05	irgsp1_rep	CDS	3241408	3241606	.	+	0	Parent=Os05t0155300-01
Chr05	irgsp1_rep	CDS	3241972	3242133	.	+	2	Parent=Os05t0155300-01
Chr05	irgsp1_rep	CDS	3243117	3243292	.	+	2	Parent=Os05t0155300-01
Chr05	irgsp1_rep	CDS	3244169	3244272	.	+	0	Parent=Os05t0155300-01
Chr05	irgsp1_rep	CDS	3244358	3244469	.	+	1	Parent=Os05t0155300-01
Chr05	irgsp1_rep	CDS	3244660	3244725	.	+	0	Parent=Os05t0155300-01
Chr05	irgsp1_rep	three_prime_UTR	3244726	3245075	.	+	.	Parent=Os05t0155300-01
Chr05	irgsp1_rep	mRNA	3245448	3247629	.	-	.	ID=Os05t0155400-01;Name=Os05t0155400-01;Locus_id=Os05g0155400;CGSNL Gene Symbol=GATA13;CGSNL Gene Name=GATA TRANSCRIPTION FACTOR 13;Oryzabase Gene Symbol Synonym(s)=OsGATA13;Oryzabase Gene Name Synonym(s)=GATA transcription factor 13%2C GATA factor 13;Note=Zinc finger%2C NHR/GATA-type domain containing protein.;Transcript_evidence=AK241016 (DDBJ%2C Best hit);ORF_evidence=NP_001054691.2 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Zinc finger%2C GATA-type (IPR000679),Zinc finger%2C NHR/GATA-type (IPR013088);NIAS_FLcDNA=J065054C19;Oryzabase=20497;TENOR=Os05t0155400-01;KEGG=Os05t0155400-01
Chr05	irgsp1_rep	CDS	3247483	3247629	.	-	0	Parent=Os05t0155400-01
Chr05	irgsp1_rep	CDS	3247273	3247389	.	-	0	Parent=Os05t0155400-01
Chr05	irgsp1_rep	CDS	3245999	3246316	.	-	0	Parent=Os05t0155400-01
Chr05	irgsp1_rep	three_prime_UTR	3245448	3245998	.	-	.	Parent=Os05t0155400-01
Chr05	irgsp1_rep	mRNA	3245999	3246383	.	+	.	ID=Os05t0155450-00;Name=Os05t0155450-00;Locus_id=Os05g0155450;Note=Non-protein coding transcript.;Transcript_evidence=EU970609 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0155450-00
Chr05	irgsp1_rep	exon	3245999	3246383	.	+	.	Parent=Os05t0155450-00
Chr05	irgsp1_rep	mRNA	3251081	3256025	.	-	.	ID=Os05t0155601-01;Name=Os05t0155601-01;Locus_id=Os05g0155601;RAP-DB Gene Symbol Synonym(s)=Imp a1b%2C Imp3;RAP-DB Gene Name Synonym(s)=Importin alpha 1b%2C importin a1b.;CGSNL Gene Symbol=IMPA1B;CGSNL Gene Name=IMPORTIN ALPHA 1B;Oryzabase Gene Symbol Synonym(s)=Imp3%2C OsImpalpha1b%2C Impalpha1b;Oryzabase Gene Name Synonym(s)=Importin alpha 1b%2C importin alpha-1b;Note=Importin alpha homologue%2C Component of the NLS-receptor in plant cells%2C Regulation of plant nuclear protein import;Transcript_evidence=AB024311,AK120498 (truncated);ORF_evidence=Q9SLX0;GO=Biological Process: protein import into nucleus (GO:0006606),Molecular Function: protein binding (GO:0005515),Molecular Function: protein transporter activity (GO:0008565),Molecular Function: nuclear import signal receptor activity (GO:0061608),Cellular Component: nucleus (GO:0005634),Cellular Component: cytoplasm (GO:0005737);InterPro=Importin-alpha%2C importin-beta-binding domain superfamily (IPR036975),Armadillo-type fold (IPR016024),Armadillo-like helical (IPR011989),Importin subunit alpha (IPR024931),Importin-alpha%2C importin-beta-binding domain (IPR002652),Armadillo (IPR000225),Atypical Arm repeat (IPR032413);NIAS_FLcDNA=J013121O08 (truncated);Manual Curation=October 26%2C 2018;Literature_PMID=29301510,11124253;Oryzabase=22237;Expression=AK120498;TENOR=Os05t0155601-00
Chr05	irgsp1_rep	five_prime_UTR	3255882	3256025	.	-	.	Parent=Os05t0155601-01
Chr05	irgsp1_rep	CDS	3255654	3255881	.	-	0	Parent=Os05t0155601-01
Chr05	irgsp1_rep	CDS	3255450	3255546	.	-	0	Parent=Os05t0155601-01
Chr05	irgsp1_rep	CDS	3254880	3254971	.	-	2	Parent=Os05t0155601-01
Chr05	irgsp1_rep	CDS	3254654	3254785	.	-	0	Parent=Os05t0155601-01
Chr05	irgsp1_rep	CDS	3254364	3254549	.	-	0	Parent=Os05t0155601-01
Chr05	irgsp1_rep	CDS	3254112	3254275	.	-	0	Parent=Os05t0155601-01
Chr05	irgsp1_rep	CDS	3253934	3254012	.	-	1	Parent=Os05t0155601-01
Chr05	irgsp1_rep	CDS	3252708	3252836	.	-	0	Parent=Os05t0155601-01
Chr05	irgsp1_rep	CDS	3252503	3252630	.	-	0	Parent=Os05t0155601-01
Chr05	irgsp1_rep	CDS	3252035	3252404	.	-	1	Parent=Os05t0155601-01
Chr05	irgsp1_rep	three_prime_UTR	3252033	3252034	.	-	.	Parent=Os05t0155601-01
Chr05	irgsp1_rep	three_prime_UTR	3251081	3251943	.	-	.	Parent=Os05t0155601-01
Chr05	irgsp1_rep	mRNA	3257572	3262823	.	+	.	ID=Os05t0155700-01;Name=Os05t0155700-01;Locus_id=Os05g0155700;Note=Ribosomal protein S2%2C conserved site domain containing protein.;Transcript_evidence=AK066581 (DDBJ%2C Best hit);ORF_evidence=Q01L45 (UniProt);InterPro=Protein of unknown function DUF1624 (IPR012429);NIAS_FLcDNA=J013070I02;Expression=AK066581;TENOR=Os05t0155700-01;KEGG=Os05t0155700-01
Chr05	irgsp1_rep	five_prime_UTR	3257572	3257584	.	+	.	Parent=Os05t0155700-01
Chr05	irgsp1_rep	CDS	3257585	3257785	.	+	0	Parent=Os05t0155700-01
Chr05	irgsp1_rep	CDS	3257887	3258024	.	+	0	Parent=Os05t0155700-01
Chr05	irgsp1_rep	CDS	3258859	3258940	.	+	0	Parent=Os05t0155700-01
Chr05	irgsp1_rep	CDS	3259054	3259130	.	+	2	Parent=Os05t0155700-01
Chr05	irgsp1_rep	CDS	3259225	3259331	.	+	0	Parent=Os05t0155700-01
Chr05	irgsp1_rep	CDS	3259763	3259901	.	+	1	Parent=Os05t0155700-01
Chr05	irgsp1_rep	CDS	3260998	3261114	.	+	0	Parent=Os05t0155700-01
Chr05	irgsp1_rep	CDS	3261246	3261337	.	+	0	Parent=Os05t0155700-01
Chr05	irgsp1_rep	CDS	3261492	3261558	.	+	1	Parent=Os05t0155700-01
Chr05	irgsp1_rep	CDS	3261673	3261751	.	+	0	Parent=Os05t0155700-01
Chr05	irgsp1_rep	CDS	3261851	3261942	.	+	2	Parent=Os05t0155700-01
Chr05	irgsp1_rep	CDS	3262147	3262290	.	+	0	Parent=Os05t0155700-01
Chr05	irgsp1_rep	CDS	3262491	3262631	.	+	0	Parent=Os05t0155700-01
Chr05	irgsp1_rep	three_prime_UTR	3262632	3262823	.	+	.	Parent=Os05t0155700-01
Chr05	irgsp1_rep	mRNA	3269118	3270614	.	+	.	ID=Os05t0155800-00;Name=Os05t0155800-00;Locus_id=Os05g0155800;Note=Similar to OSIGBa0157A06.5 protein.;Transcript_evidence=EU968877 (DDBJ);ORF_evidence=Q01IV4 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os05t0155800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	3269118	3270614	.	+	0	Parent=Os05t0155800-00
Chr05	irgsp1_rep	mRNA	3291029	3293970	.	+	.	ID=Os05t0156200-01;Name=Os05t0156200-01;Locus_id=Os05g0156200;Note=Conserved hypothetical protein.;Transcript_evidence=AK071622 (DDBJ%2C Best hit);ORF_evidence=B9FHF2 (UniProt);NIAS_FLcDNA=J023099E19;Expression=AK071622;TENOR=Os05t0156200-01;KEGG=Os05t0156200-01
Chr05	irgsp1_rep	five_prime_UTR	3291029	3291123	.	+	.	Parent=Os05t0156200-01
Chr05	irgsp1_rep	CDS	3291124	3291252	.	+	0	Parent=Os05t0156200-01
Chr05	irgsp1_rep	CDS	3291859	3291956	.	+	0	Parent=Os05t0156200-01
Chr05	irgsp1_rep	CDS	3293143	3293782	.	+	1	Parent=Os05t0156200-01
Chr05	irgsp1_rep	three_prime_UTR	3293783	3293970	.	+	.	Parent=Os05t0156200-01
Chr05	irgsp1_rep	mRNA	3294722	3298053	.	-	.	ID=Os05t0156300-01;Name=Os05t0156300-01;Locus_id=Os05g0156300;Oryzabase Gene Symbol Synonym(s)=PDIL2%3B1%2C OsPDIL2%3B1%2C PDIL2-1%2C OsPDIL2-1;Oryzabase Gene Name Synonym(s)=PROTEIN DISULFIDE ISOMERASE-LIKE 2%3B1%2C PROTEIN DISULFIDE ISOMERASE-LIKE 2-1%2C PDI-like protein 2-1;Note=Similar to protein disulfide isomerase.;Transcript_evidence=AK099341 (DDBJ%2C Best hit);ORF_evidence=Q75M08-2 (UniProt);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Cellular Component: endoplasmic reticulum (GO:0005783),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035),Molecular Function: isomerase activity (GO:0016853);InterPro=Thioredoxin (IPR005746),Disulphide isomerase (IPR005788),Endoplasmic reticulum%2C protein ERp29%2C C-terminal (IPR011679),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766),Thioredoxin%2C conserved site (IPR017937);NIAS_FLcDNA=J033028P21;Oryzabase=11900;Expression=AK099341;TENOR=Os05t0156300-01;KEGG=Os05t0156300-01 (EC:5.3.4.1)
Chr05	irgsp1_rep	five_prime_UTR	3297997	3298053	.	-	.	Parent=Os05t0156300-01
Chr05	irgsp1_rep	CDS	3297824	3297996	.	-	0	Parent=Os05t0156300-01
Chr05	irgsp1_rep	CDS	3297260	3297344	.	-	1	Parent=Os05t0156300-01
Chr05	irgsp1_rep	CDS	3296952	3297049	.	-	0	Parent=Os05t0156300-01
Chr05	irgsp1_rep	CDS	3296807	3296862	.	-	1	Parent=Os05t0156300-01
Chr05	irgsp1_rep	CDS	3296345	3296462	.	-	2	Parent=Os05t0156300-01
Chr05	irgsp1_rep	CDS	3296224	3296251	.	-	1	Parent=Os05t0156300-01
Chr05	irgsp1_rep	CDS	3296040	3296131	.	-	0	Parent=Os05t0156300-01
Chr05	irgsp1_rep	CDS	3295640	3295796	.	-	1	Parent=Os05t0156300-01
Chr05	irgsp1_rep	CDS	3295433	3295557	.	-	0	Parent=Os05t0156300-01
Chr05	irgsp1_rep	CDS	3295247	3295349	.	-	1	Parent=Os05t0156300-01
Chr05	irgsp1_rep	CDS	3295088	3295156	.	-	0	Parent=Os05t0156300-01
Chr05	irgsp1_rep	three_prime_UTR	3294722	3295087	.	-	.	Parent=Os05t0156300-01
Chr05	irgsp1_rep	mRNA	3294701	3298053	.	-	.	ID=Os05t0156300-02;Name=Os05t0156300-02;Locus_id=Os05g0156300;Oryzabase Gene Symbol Synonym(s)=PDIL2%3B1%2C OsPDIL2%3B1%2C PDIL2-1%2C OsPDIL2-1;Oryzabase Gene Name Synonym(s)=PROTEIN DISULFIDE ISOMERASE-LIKE 2%3B1%2C PROTEIN DISULFIDE ISOMERASE-LIKE 2-1%2C PDI-like protein 2-1;Note=Similar to Protein disulfide isomerase.;Transcript_evidence=AK062024 (DDBJ%2C Best hit),AK098931 (DDBJ%2C Best hit);ORF_evidence=Q75M08 (UniProt);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Cellular Component: endoplasmic reticulum (GO:0005783),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035),Molecular Function: isomerase activity (GO:0016853);InterPro=Thioredoxin (IPR005746),Disulphide isomerase (IPR005788),Endoplasmic reticulum%2C protein ERp29%2C C-terminal (IPR011679),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766),Thioredoxin%2C conserved site (IPR017937);NIAS_FLcDNA=001-043-G03,J013023F18;Oryzabase=11900;TENOR=Os05t0156300-02
Chr05	irgsp1_rep	five_prime_UTR	3297997	3298053	.	-	.	Parent=Os05t0156300-02
Chr05	irgsp1_rep	CDS	3297824	3297996	.	-	0	Parent=Os05t0156300-02
Chr05	irgsp1_rep	CDS	3297260	3297344	.	-	1	Parent=Os05t0156300-02
Chr05	irgsp1_rep	CDS	3296952	3297049	.	-	0	Parent=Os05t0156300-02
Chr05	irgsp1_rep	CDS	3296807	3296862	.	-	1	Parent=Os05t0156300-02
Chr05	irgsp1_rep	CDS	3296345	3296462	.	-	2	Parent=Os05t0156300-02
Chr05	irgsp1_rep	CDS	3296224	3296251	.	-	1	Parent=Os05t0156300-02
Chr05	irgsp1_rep	CDS	3296040	3296131	.	-	0	Parent=Os05t0156300-02
Chr05	irgsp1_rep	CDS	3295640	3295796	.	-	1	Parent=Os05t0156300-02
Chr05	irgsp1_rep	CDS	3295433	3295557	.	-	0	Parent=Os05t0156300-02
Chr05	irgsp1_rep	CDS	3295247	3295346	.	-	1	Parent=Os05t0156300-02
Chr05	irgsp1_rep	CDS	3295088	3295156	.	-	0	Parent=Os05t0156300-02
Chr05	irgsp1_rep	three_prime_UTR	3294701	3295087	.	-	.	Parent=Os05t0156300-02
Chr05	irgsp1_rep	mRNA	3294772	3298010	.	-	.	ID=Os05t0156300-03;Name=Os05t0156300-03;Locus_id=Os05g0156300;Oryzabase Gene Symbol Synonym(s)=PDIL2%3B1%2C OsPDIL2%3B1%2C PDIL2-1%2C OsPDIL2-1;Oryzabase Gene Name Synonym(s)=PROTEIN DISULFIDE ISOMERASE-LIKE 2%3B1%2C PROTEIN DISULFIDE ISOMERASE-LIKE 2-1%2C PDI-like protein 2-1;Note=Similar to Protein disulfide isomerase.;Transcript_evidence=AK103944 (DDBJ%2C Best hit);ORF_evidence=Q75M08 (UniProt);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Cellular Component: endoplasmic reticulum (GO:0005783),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035),Molecular Function: isomerase activity (GO:0016853);InterPro=Thioredoxin (IPR005746),Disulphide isomerase (IPR005788),Endoplasmic reticulum%2C protein ERp29%2C C-terminal (IPR011679),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766),Thioredoxin%2C conserved site (IPR017937);NIAS_FLcDNA=001-014-A01;Oryzabase=11900;Expression=AK103944;TENOR=Os05t0156300-03;KEGG=Os05t0156300-03 (EC:5.3.4.1)
Chr05	irgsp1_rep	five_prime_UTR	3297997	3298010	.	-	.	Parent=Os05t0156300-03
Chr05	irgsp1_rep	CDS	3297824	3297996	.	-	0	Parent=Os05t0156300-03
Chr05	irgsp1_rep	CDS	3297260	3297344	.	-	1	Parent=Os05t0156300-03
Chr05	irgsp1_rep	CDS	3296952	3297049	.	-	0	Parent=Os05t0156300-03
Chr05	irgsp1_rep	CDS	3296807	3296862	.	-	1	Parent=Os05t0156300-03
Chr05	irgsp1_rep	CDS	3296345	3296462	.	-	2	Parent=Os05t0156300-03
Chr05	irgsp1_rep	CDS	3296224	3296251	.	-	1	Parent=Os05t0156300-03
Chr05	irgsp1_rep	CDS	3296040	3296131	.	-	0	Parent=Os05t0156300-03
Chr05	irgsp1_rep	CDS	3295640	3295796	.	-	1	Parent=Os05t0156300-03
Chr05	irgsp1_rep	CDS	3295433	3295557	.	-	0	Parent=Os05t0156300-03
Chr05	irgsp1_rep	CDS	3295247	3295346	.	-	1	Parent=Os05t0156300-03
Chr05	irgsp1_rep	CDS	3295088	3295156	.	-	0	Parent=Os05t0156300-03
Chr05	irgsp1_rep	three_prime_UTR	3294772	3295087	.	-	.	Parent=Os05t0156300-03
Chr05	irgsp1_rep	mRNA	3303743	3305223	.	-	.	ID=Os05t0156401-00;Name=Os05t0156401-00;Locus_id=Os05g0156401;Note=Hypothetical gene.;Transcript_evidence=BT086849 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0156401-00
Chr05	irgsp1_rep	five_prime_UTR	3305223	3305223	.	-	.	Parent=Os05t0156401-00
Chr05	irgsp1_rep	CDS	3305129	3305222	.	-	0	Parent=Os05t0156401-00
Chr05	irgsp1_rep	CDS	3304134	3304259	.	-	2	Parent=Os05t0156401-00
Chr05	irgsp1_rep	CDS	3303743	3303890	.	-	2	Parent=Os05t0156401-00
Chr05	irgsp1_rep	mRNA	3305712	3307705	.	+	.	ID=Os05t0156500-01;Name=Os05t0156500-01;Locus_id=Os05g0156500;Oryzabase Gene Symbol Synonym(s)=OsDjB6%2C OsERdj3B;Oryzabase Gene Name Synonym(s)=ERdj3B-like gene%2C ERDJ3 like%2C ERDJ3 like gene%2C DnaJ domain protein B6%2C ER-resident J-protein 3B;Note=Similar to Apobec-1 binding protein 2.;Transcript_evidence=AK062718 (DDBJ%2C Best hit);ORF_evidence=XP_002878466.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Chaperone DnaJ%2C C-terminal (IPR002939),HSP40/DnaJ peptide-binding (IPR008971);NIAS_FLcDNA=001-106-C11;Oryzabase=10089;Expression=AK062718;TENOR=Os05t0156500-01;KEGG=Os05t0156500-01
Chr05	irgsp1_rep	five_prime_UTR	3305712	3305713	.	+	.	Parent=Os05t0156500-01
Chr05	irgsp1_rep	CDS	3305714	3305785	.	+	0	Parent=Os05t0156500-01
Chr05	irgsp1_rep	CDS	3306337	3306396	.	+	0	Parent=Os05t0156500-01
Chr05	irgsp1_rep	CDS	3306493	3306570	.	+	0	Parent=Os05t0156500-01
Chr05	irgsp1_rep	CDS	3306983	3307054	.	+	0	Parent=Os05t0156500-01
Chr05	irgsp1_rep	CDS	3307163	3307321	.	+	0	Parent=Os05t0156500-01
Chr05	irgsp1_rep	three_prime_UTR	3307322	3307705	.	+	.	Parent=Os05t0156500-01
Chr05	irgsp1_rep	mRNA	3308054	3312596	.	-	.	ID=Os05t0156600-01;Name=Os05t0156600-01;Locus_id=Os05g0156600;Note=Similar to Tubulin gamma-1 chain (Gamma-1 tubulin).;Transcript_evidence=AK102557 (DDBJ%2C Best hit);ORF_evidence=O49068 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: microtubule-based process (GO:0007017),Biological Process: protein polymerization (GO:0051258),Cellular Component: microtubule (GO:0005874),Cellular Component: protein complex (GO:0043234),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Tubulin (IPR000217),Gamma tubulin (IPR002454),Tubulin/FtsZ%2C GTPase domain (IPR003008),Tubulin/FtsZ%2C C-terminal (IPR008280),Tubulin%2C conserved site (IPR017975),Tubulin/FtsZ%2C 2-layer sandwich domain (IPR018316),Tubulin%2C C-terminal (IPR023123);NIAS_FLcDNA=J033097H10;Expression=AK102557;TENOR=Os05t0156600-01;KEGG=Os05t0156600-01
Chr05	irgsp1_rep	five_prime_UTR	3312369	3312596	.	-	.	Parent=Os05t0156600-01
Chr05	irgsp1_rep	CDS	3312240	3312368	.	-	0	Parent=Os05t0156600-01
Chr05	irgsp1_rep	CDS	3311282	3311482	.	-	0	Parent=Os05t0156600-01
Chr05	irgsp1_rep	CDS	3310979	3311090	.	-	0	Parent=Os05t0156600-01
Chr05	irgsp1_rep	CDS	3310366	3310766	.	-	2	Parent=Os05t0156600-01
Chr05	irgsp1_rep	CDS	3310110	3310163	.	-	0	Parent=Os05t0156600-01
Chr05	irgsp1_rep	CDS	3309916	3310020	.	-	0	Parent=Os05t0156600-01
Chr05	irgsp1_rep	CDS	3309675	3309749	.	-	0	Parent=Os05t0156600-01
Chr05	irgsp1_rep	CDS	3309555	3309599	.	-	0	Parent=Os05t0156600-01
Chr05	irgsp1_rep	CDS	3309346	3309474	.	-	0	Parent=Os05t0156600-01
Chr05	irgsp1_rep	CDS	3308929	3309033	.	-	0	Parent=Os05t0156600-01
Chr05	irgsp1_rep	CDS	3308801	3308854	.	-	0	Parent=Os05t0156600-01
Chr05	irgsp1_rep	three_prime_UTR	3308793	3308800	.	-	.	Parent=Os05t0156600-01
Chr05	irgsp1_rep	three_prime_UTR	3308054	3308357	.	-	.	Parent=Os05t0156600-01
Chr05	irgsp1_rep	mRNA	3313455	3315712	.	-	.	ID=Os05t0156700-01;Name=Os05t0156700-01;Locus_id=Os05g0156700;Note=Similar to Dihydrolipoyl dehydrogenase.;Transcript_evidence=AK242902 (DDBJ%2C Best hit);ORF_evidence=B8AYG2 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: cytoplasm (GO:0005737),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Fumarate reductase/succinate dehydrogenase flavoprotein%2C N-terminal (IPR003953),Pyridine nucleotide-disulphide oxidoreductase%2C dimerisation (IPR004099),FAD/NAD-linked reductase%2C dimerisation (IPR016156);NIAS_FLcDNA=J090081N15;TENOR=Os05t0156700-01;KEGG=Os05t0156700-01 (EC:1.8.1.4)
Chr05	irgsp1_rep	CDS	3315677	3315712	.	-	0	Parent=Os05t0156700-01
Chr05	irgsp1_rep	CDS	3315351	3315413	.	-	0	Parent=Os05t0156700-01
Chr05	irgsp1_rep	CDS	3315185	3315259	.	-	0	Parent=Os05t0156700-01
Chr05	irgsp1_rep	CDS	3315012	3315090	.	-	0	Parent=Os05t0156700-01
Chr05	irgsp1_rep	CDS	3314816	3314916	.	-	2	Parent=Os05t0156700-01
Chr05	irgsp1_rep	CDS	3314446	3314559	.	-	0	Parent=Os05t0156700-01
Chr05	irgsp1_rep	CDS	3314159	3314272	.	-	0	Parent=Os05t0156700-01
Chr05	irgsp1_rep	CDS	3313991	3314062	.	-	0	Parent=Os05t0156700-01
Chr05	irgsp1_rep	CDS	3313847	3313894	.	-	0	Parent=Os05t0156700-01
Chr05	irgsp1_rep	three_prime_UTR	3313455	3313846	.	-	.	Parent=Os05t0156700-01
Chr05	irgsp1_rep	mRNA	3323084	3334309	.	+	.	ID=Os05t0156800-01;Name=Os05t0156800-01;Locus_id=Os05g0156800;Note=Conserved hypothetical protein.;Transcript_evidence=AK119449 (DDBJ%2C Best hit);ORF_evidence=B9FMK2 (UniProt);NIAS_FLcDNA=001-133-D06;TENOR=Os05t0156800-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	3323084	3323281	.	+	.	Parent=Os05t0156800-01
Chr05	irgsp1_rep	CDS	3323282	3323353	.	+	0	Parent=Os05t0156800-01
Chr05	irgsp1_rep	CDS	3324913	3324993	.	+	0	Parent=Os05t0156800-01
Chr05	irgsp1_rep	CDS	3325511	3325610	.	+	0	Parent=Os05t0156800-01
Chr05	irgsp1_rep	CDS	3325699	3325783	.	+	2	Parent=Os05t0156800-01
Chr05	irgsp1_rep	CDS	3325869	3325918	.	+	1	Parent=Os05t0156800-01
Chr05	irgsp1_rep	CDS	3326002	3326071	.	+	2	Parent=Os05t0156800-01
Chr05	irgsp1_rep	CDS	3327032	3327035	.	+	1	Parent=Os05t0156800-01
Chr05	irgsp1_rep	three_prime_UTR	3327036	3327111	.	+	.	Parent=Os05t0156800-01
Chr05	irgsp1_rep	three_prime_UTR	3327336	3327401	.	+	.	Parent=Os05t0156800-01
Chr05	irgsp1_rep	three_prime_UTR	3328157	3328256	.	+	.	Parent=Os05t0156800-01
Chr05	irgsp1_rep	three_prime_UTR	3328330	3328407	.	+	.	Parent=Os05t0156800-01
Chr05	irgsp1_rep	three_prime_UTR	3328561	3328628	.	+	.	Parent=Os05t0156800-01
Chr05	irgsp1_rep	three_prime_UTR	3328701	3328769	.	+	.	Parent=Os05t0156800-01
Chr05	irgsp1_rep	three_prime_UTR	3328881	3328958	.	+	.	Parent=Os05t0156800-01
Chr05	irgsp1_rep	three_prime_UTR	3329050	3329145	.	+	.	Parent=Os05t0156800-01
Chr05	irgsp1_rep	three_prime_UTR	3329958	3330028	.	+	.	Parent=Os05t0156800-01
Chr05	irgsp1_rep	three_prime_UTR	3331029	3331106	.	+	.	Parent=Os05t0156800-01
Chr05	irgsp1_rep	three_prime_UTR	3331205	3331310	.	+	.	Parent=Os05t0156800-01
Chr05	irgsp1_rep	three_prime_UTR	3331872	3331976	.	+	.	Parent=Os05t0156800-01
Chr05	irgsp1_rep	three_prime_UTR	3332125	3332336	.	+	.	Parent=Os05t0156800-01
Chr05	irgsp1_rep	three_prime_UTR	3332442	3332556	.	+	.	Parent=Os05t0156800-01
Chr05	irgsp1_rep	three_prime_UTR	3332653	3332968	.	+	.	Parent=Os05t0156800-01
Chr05	irgsp1_rep	three_prime_UTR	3333052	3333161	.	+	.	Parent=Os05t0156800-01
Chr05	irgsp1_rep	three_prime_UTR	3333265	3334309	.	+	.	Parent=Os05t0156800-01
Chr05	irgsp1_rep	mRNA	3335380	3339817	.	-	.	ID=Os05t0156900-01;Name=Os05t0156900-01;Locus_id=Os05g0156900;RAP-DB Gene Symbol Synonym(s)=Chalk5;Oryzabase Gene Symbol Synonym(s)=Chalk5;Oryzabase Gene Name Synonym(s)=Pyrophosphate-energized vacuolar membrane proton pump;Note=Vacuolar H+-translocating pyrophosphatase%2C Regulation of grain chalkiness;Transcript_evidence=AK107275,KJ363317 (Zhenshan97%2C 9bp deletion);ORF_evidence=Q75M03,A2Y0L3;GO=Biological Process: proton transport (GO:0015992),Molecular Function: inorganic diphosphatase activity (GO:0004427),Molecular Function: hydrogen-translocating pyrophosphatase activity (GO:0009678),Cellular Component: membrane (GO:0016020);InterPro=Pyrophosphate-energised proton pump (IPR004131);NIAS_FLcDNA=002-126-A04;Manual Curation=April 15%2C 2014;Literature_PMID=24633159;Oryzabase=15662;TENOR=Os05t0156900-01;KEGG=Os05t0156900-01 (EC:3.6.1.1)
Chr05	irgsp1_rep	five_prime_UTR	3339723	3339817	.	-	.	Parent=Os05t0156900-01
Chr05	irgsp1_rep	CDS	3338886	3339722	.	-	0	Parent=Os05t0156900-01
Chr05	irgsp1_rep	CDS	3337226	3337605	.	-	0	Parent=Os05t0156900-01
Chr05	irgsp1_rep	CDS	3336739	3336825	.	-	1	Parent=Os05t0156900-01
Chr05	irgsp1_rep	CDS	3335633	3336641	.	-	1	Parent=Os05t0156900-01
Chr05	irgsp1_rep	three_prime_UTR	3335380	3335632	.	-	.	Parent=Os05t0156900-01
Chr05	irgsp1_rep	mRNA	3335645	3337130	.	+	.	ID=Os05t0157000-01;Name=Os05t0157000-01;Locus_id=Os05g0157000;Note=Hypothetical protein.;Transcript_evidence=AK109809 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-147-G08;Expression=AK109809;TENOR=Os05t0157000-01;KEGG=Os05t0157000-01
Chr05	irgsp1_rep	five_prime_UTR	3335645	3335659	.	+	.	Parent=Os05t0157000-01
Chr05	irgsp1_rep	CDS	3335660	3336700	.	+	0	Parent=Os05t0157000-01
Chr05	irgsp1_rep	three_prime_UTR	3336701	3337130	.	+	.	Parent=Os05t0157000-01
Chr05	irgsp1_rep	mRNA	3342112	3344596	.	+	.	ID=Os05t0157100-01;Name=Os05t0157100-01;Locus_id=Os05g0157100;Note=Nucleic acid-binding%2C OB-fold domain containing protein.;Transcript_evidence=AK062374 (DDBJ%2C Best hit);ORF_evidence=B4FXC7 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899);InterPro=RNA polymerase Rpb7%2C N-terminal (IPR005576),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=001-102-A10;Expression=AK062374;TENOR=Os05t0157100-01;KEGG=Os05t0157100-01
Chr05	irgsp1_rep	five_prime_UTR	3342112	3342213	.	+	.	Parent=Os05t0157100-01
Chr05	irgsp1_rep	five_prime_UTR	3343790	3343799	.	+	.	Parent=Os05t0157100-01
Chr05	irgsp1_rep	CDS	3343800	3344327	.	+	0	Parent=Os05t0157100-01
Chr05	irgsp1_rep	three_prime_UTR	3344328	3344596	.	+	.	Parent=Os05t0157100-01
Chr05	irgsp1_rep	mRNA	3345130	3347246	.	-	.	ID=Os05t0157200-01;Name=Os05t0157200-01;Locus_id=Os05g0157200;Note=UspA domain containing protein.;Transcript_evidence=AK103075 (DDBJ%2C Best hit),AK065771 (DDBJ%2C Best hit);ORF_evidence=B5UB77 (UniProt);GO=Biological Process: response to stress (GO:0006950);InterPro=Universal stress protein A (IPR006015),UspA (IPR006016),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J033118C16,J013041K03;TENOR=Os05t0157200-01
Chr05	irgsp1_rep	five_prime_UTR	3347160	3347246	.	-	.	Parent=Os05t0157200-01
Chr05	irgsp1_rep	CDS	3346967	3347159	.	-	0	Parent=Os05t0157200-01
Chr05	irgsp1_rep	CDS	3345697	3345806	.	-	2	Parent=Os05t0157200-01
Chr05	irgsp1_rep	CDS	3345496	3345614	.	-	0	Parent=Os05t0157200-01
Chr05	irgsp1_rep	CDS	3345318	3345399	.	-	1	Parent=Os05t0157200-01
Chr05	irgsp1_rep	three_prime_UTR	3345130	3345317	.	-	.	Parent=Os05t0157200-01
Chr05	irgsp1_rep	mRNA	3348814	3352799	.	-	.	ID=Os05t0157300-01;Name=Os05t0157300-01;Locus_id=Os05g0157300;Note=4Fe-4S ferredoxin%2C iron-sulpur binding domain domain containing protein.;Transcript_evidence=AK109361 (DDBJ%2C Best hit);ORF_evidence=NP_001151130.1 (RefSeq);GO=Molecular Function: electron carrier activity (GO:0009055),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=4Fe-4S binding domain (IPR001450),4Fe-4S ferredoxin%2C iron-sulpur binding domain (IPR017896),4Fe-4S ferredoxin%2C iron-sulphur binding%2C conserved site (IPR017900),Iron-sulphur binding protein LdpA%2C C-terminal (IPR021039);NIAS_FLcDNA=006-206-D09;Expression=AK109361;TENOR=Os05t0157300-01;KEGG=Os05t0157300-01
Chr05	irgsp1_rep	five_prime_UTR	3352764	3352799	.	-	.	Parent=Os05t0157300-01
Chr05	irgsp1_rep	CDS	3352602	3352763	.	-	0	Parent=Os05t0157300-01
Chr05	irgsp1_rep	CDS	3352213	3352261	.	-	0	Parent=Os05t0157300-01
Chr05	irgsp1_rep	CDS	3351710	3351862	.	-	2	Parent=Os05t0157300-01
Chr05	irgsp1_rep	CDS	3351305	3351441	.	-	2	Parent=Os05t0157300-01
Chr05	irgsp1_rep	CDS	3351150	3351219	.	-	0	Parent=Os05t0157300-01
Chr05	irgsp1_rep	CDS	3350871	3350961	.	-	2	Parent=Os05t0157300-01
Chr05	irgsp1_rep	CDS	3350704	3350773	.	-	1	Parent=Os05t0157300-01
Chr05	irgsp1_rep	CDS	3350522	3350617	.	-	0	Parent=Os05t0157300-01
Chr05	irgsp1_rep	CDS	3350155	3350254	.	-	0	Parent=Os05t0157300-01
Chr05	irgsp1_rep	CDS	3349975	3350061	.	-	2	Parent=Os05t0157300-01
Chr05	irgsp1_rep	CDS	3349653	3349729	.	-	2	Parent=Os05t0157300-01
Chr05	irgsp1_rep	CDS	3349241	3349387	.	-	0	Parent=Os05t0157300-01
Chr05	irgsp1_rep	three_prime_UTR	3348814	3349240	.	-	.	Parent=Os05t0157300-01
Chr05	irgsp1_rep	mRNA	3348819	3352787	.	-	.	ID=Os05t0157300-02;Name=Os05t0157300-02;Locus_id=Os05g0157300;Note=Similar to 4Fe-4S ferredoxin%2C iron-sulfur binding protein.;Transcript_evidence=AK101831 (DDBJ%2C Best hit);ORF_evidence=NP_001151130.1 (RefSeq);GO=Molecular Function: electron carrier activity (GO:0009055),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=4Fe-4S binding domain (IPR001450),4Fe-4S ferredoxin%2C iron-sulpur binding domain (IPR017896),4Fe-4S ferredoxin%2C iron-sulphur binding%2C conserved site (IPR017900);NIAS_FLcDNA=J033068K21;TENOR=Os05t0157300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	3352764	3352787	.	-	.	Parent=Os05t0157300-02
Chr05	irgsp1_rep	CDS	3352602	3352763	.	-	0	Parent=Os05t0157300-02
Chr05	irgsp1_rep	CDS	3352213	3352261	.	-	0	Parent=Os05t0157300-02
Chr05	irgsp1_rep	CDS	3351710	3351862	.	-	2	Parent=Os05t0157300-02
Chr05	irgsp1_rep	CDS	3351305	3351441	.	-	2	Parent=Os05t0157300-02
Chr05	irgsp1_rep	CDS	3351150	3351219	.	-	0	Parent=Os05t0157300-02
Chr05	irgsp1_rep	CDS	3350973	3350992	.	-	2	Parent=Os05t0157300-02
Chr05	irgsp1_rep	three_prime_UTR	3350871	3350972	.	-	.	Parent=Os05t0157300-02
Chr05	irgsp1_rep	three_prime_UTR	3350704	3350773	.	-	.	Parent=Os05t0157300-02
Chr05	irgsp1_rep	three_prime_UTR	3350522	3350617	.	-	.	Parent=Os05t0157300-02
Chr05	irgsp1_rep	three_prime_UTR	3350155	3350254	.	-	.	Parent=Os05t0157300-02
Chr05	irgsp1_rep	three_prime_UTR	3349975	3350061	.	-	.	Parent=Os05t0157300-02
Chr05	irgsp1_rep	three_prime_UTR	3349653	3349729	.	-	.	Parent=Os05t0157300-02
Chr05	irgsp1_rep	three_prime_UTR	3348819	3349387	.	-	.	Parent=Os05t0157300-02
Chr05	irgsp1_rep	mRNA	3348862	3350398	.	-	.	ID=Os05t0157300-03;Name=Os05t0157300-03;Locus_id=Os05g0157300;Note=Similar to 4Fe-4S ferredoxin%2C iron-sulfur binding protein.;Transcript_evidence=AK058852 (DDBJ%2C Best hit);ORF_evidence=NP_001151130.1 (RefSeq);InterPro=Iron-sulphur binding protein LdpA%2C C-terminal (IPR021039);NIAS_FLcDNA=001-005-A11;Expression=AK058852;TENOR=Os05t0157300-03;KEGG=Os05t0157300-03
Chr05	irgsp1_rep	five_prime_UTR	3350336	3350398	.	-	.	Parent=Os05t0157300-03
Chr05	irgsp1_rep	CDS	3350155	3350335	.	-	0	Parent=Os05t0157300-03
Chr05	irgsp1_rep	CDS	3349952	3350061	.	-	2	Parent=Os05t0157300-03
Chr05	irgsp1_rep	three_prime_UTR	3349653	3349951	.	-	.	Parent=Os05t0157300-03
Chr05	irgsp1_rep	three_prime_UTR	3348862	3349387	.	-	.	Parent=Os05t0157300-03
Chr05	irgsp1_rep	mRNA	3361187	3364486	.	+	.	ID=Os05t0157500-01;Name=Os05t0157500-01;Locus_id=Os05g0157500;Note=Conserved hypothetical protein.;Transcript_evidence=AK071824 (DDBJ%2C Best hit);ORF_evidence=B9FHF6 (UniProt);NIAS_FLcDNA=J023119J19;TENOR=Os05t0157500-01;B5toI1=Exon-intron structures and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	3361187	3361344	.	+	.	Parent=Os05t0157500-01
Chr05	irgsp1_rep	five_prime_UTR	3361438	3361532	.	+	.	Parent=Os05t0157500-01
Chr05	irgsp1_rep	CDS	3361533	3361588	.	+	0	Parent=Os05t0157500-01
Chr05	irgsp1_rep	CDS	3363690	3363897	.	+	1	Parent=Os05t0157500-01
Chr05	irgsp1_rep	CDS	3363975	3364038	.	+	0	Parent=Os05t0157500-01
Chr05	irgsp1_rep	CDS	3364134	3364147	.	+	2	Parent=Os05t0157500-01
Chr05	irgsp1_rep	three_prime_UTR	3364148	3364211	.	+	.	Parent=Os05t0157500-01
Chr05	irgsp1_rep	three_prime_UTR	3364310	3364486	.	+	.	Parent=Os05t0157500-01
Chr05	irgsp1_rep	mRNA	3369008	3372499	.	+	.	ID=Os05t0157600-01;Name=Os05t0157600-01;Locus_id=Os05g0157600;Note=Hypothetical conserved gene.;Transcript_evidence=AK240755 (DDBJ%2C Best hit),AK287517 (DDBJ%2C Best hit);ORF_evidence=B9FMK5 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Peptidase cysteine/serine%2C trypsin-like (IPR009003);NIAS_FLcDNA=J053027G11,J053038O22;TENOR=Os05t0157600-01;KEGG=Os05t0157600-01
Chr05	irgsp1_rep	five_prime_UTR	3369008	3369086	.	+	.	Parent=Os05t0157600-01
Chr05	irgsp1_rep	CDS	3369087	3369465	.	+	0	Parent=Os05t0157600-01
Chr05	irgsp1_rep	CDS	3369594	3369734	.	+	2	Parent=Os05t0157600-01
Chr05	irgsp1_rep	CDS	3370171	3370292	.	+	2	Parent=Os05t0157600-01
Chr05	irgsp1_rep	CDS	3370758	3371027	.	+	0	Parent=Os05t0157600-01
Chr05	irgsp1_rep	CDS	3371114	3371244	.	+	0	Parent=Os05t0157600-01
Chr05	irgsp1_rep	CDS	3371649	3371856	.	+	1	Parent=Os05t0157600-01
Chr05	irgsp1_rep	CDS	3371959	3372027	.	+	0	Parent=Os05t0157600-01
Chr05	irgsp1_rep	CDS	3372117	3372194	.	+	0	Parent=Os05t0157600-01
Chr05	irgsp1_rep	CDS	3372291	3372314	.	+	0	Parent=Os05t0157600-01
Chr05	irgsp1_rep	three_prime_UTR	3372315	3372499	.	+	.	Parent=Os05t0157600-01
Chr05	irgsp1_rep	mRNA	3372405	3373071	.	-	.	ID=Os05t0157901-00;Name=Os05t0157901-00;Locus_id=Os05g0157901;Note=Non-protein coding transcript.;Transcript_evidence=AK242633 (DDBJ%2C Secondary hit);ORF_evidence=NONE;TENOR=Os05t0157901-00
Chr05	irgsp1_rep	exon	3372405	3373071	.	-	.	Parent=Os05t0157901-00
Chr05	irgsp1_rep	mRNA	3424669	3428098	.	+	.	ID=Os05t0158200-01;Name=Os05t0158200-01;Locus_id=Os05g0158200;Note=Peptidase%2C trypsin-like serine and cysteine domain containing protein.;Transcript_evidence=AK060561 (DDBJ%2C Best hit),AK101218 (DDBJ%2C Best hit);ORF_evidence=B8AYD4 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Peptidase cysteine/serine%2C trypsin-like (IPR009003);NIAS_FLcDNA=001-022-G04,J033031C13;TENOR=Os05t0158200-01
Chr05	irgsp1_rep	five_prime_UTR	3424669	3424735	.	+	.	Parent=Os05t0158200-01
Chr05	irgsp1_rep	CDS	3424736	3425108	.	+	0	Parent=Os05t0158200-01
Chr05	irgsp1_rep	CDS	3425218	3425358	.	+	2	Parent=Os05t0158200-01
Chr05	irgsp1_rep	CDS	3425784	3425905	.	+	2	Parent=Os05t0158200-01
Chr05	irgsp1_rep	CDS	3426328	3426597	.	+	0	Parent=Os05t0158200-01
Chr05	irgsp1_rep	CDS	3426684	3426814	.	+	0	Parent=Os05t0158200-01
Chr05	irgsp1_rep	CDS	3427214	3427421	.	+	1	Parent=Os05t0158200-01
Chr05	irgsp1_rep	CDS	3427516	3427581	.	+	0	Parent=Os05t0158200-01
Chr05	irgsp1_rep	CDS	3427671	3427748	.	+	0	Parent=Os05t0158200-01
Chr05	irgsp1_rep	CDS	3427825	3427848	.	+	0	Parent=Os05t0158200-01
Chr05	irgsp1_rep	three_prime_UTR	3427849	3428098	.	+	.	Parent=Os05t0158200-01
Chr05	irgsp1_rep	mRNA	3434468	3438233	.	+	.	ID=Os05t0158400-01;Name=Os05t0158400-01;Locus_id=Os05g0158400;Note=Peptidase%2C trypsin-like serine and cysteine domain containing protein.;Transcript_evidence=AK101233 (DDBJ%2C Best hit);ORF_evidence=A2Y0M0 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Peptidase cysteine/serine%2C trypsin-like (IPR009003);NIAS_FLcDNA=J033031J21;Expression=AK101233;TENOR=Os05t0158400-01;KEGG=Os05t0158400-01
Chr05	irgsp1_rep	five_prime_UTR	3434468	3434563	.	+	.	Parent=Os05t0158400-01
Chr05	irgsp1_rep	CDS	3434564	3434930	.	+	0	Parent=Os05t0158400-01
Chr05	irgsp1_rep	CDS	3435027	3435164	.	+	2	Parent=Os05t0158400-01
Chr05	irgsp1_rep	CDS	3435472	3435596	.	+	2	Parent=Os05t0158400-01
Chr05	irgsp1_rep	CDS	3436171	3436440	.	+	0	Parent=Os05t0158400-01
Chr05	irgsp1_rep	CDS	3436520	3436650	.	+	0	Parent=Os05t0158400-01
Chr05	irgsp1_rep	CDS	3437400	3437607	.	+	1	Parent=Os05t0158400-01
Chr05	irgsp1_rep	CDS	3437696	3437761	.	+	0	Parent=Os05t0158400-01
Chr05	irgsp1_rep	CDS	3437851	3437928	.	+	0	Parent=Os05t0158400-01
Chr05	irgsp1_rep	CDS	3438025	3438033	.	+	0	Parent=Os05t0158400-01
Chr05	irgsp1_rep	three_prime_UTR	3438034	3438233	.	+	.	Parent=Os05t0158400-01
Chr05	irgsp1_rep	mRNA	3439304	3443769	.	-	.	ID=Os05t0158500-01;Name=Os05t0158500-01;Locus_id=Os05g0158500;RAP-DB Gene Symbol Synonym(s)=GS5%2C OsSCP26;RAP-DB Gene Name Synonym(s)=GRAIN SIZE 5%2C serine carboxypeptidase 26;CGSNL Gene Symbol=GS5;CGSNL Gene Name=GRAIN SIZE 5;Oryzabase Gene Symbol Synonym(s)=OsSCP26%2C SCP26%2C OsGS5;Oryzabase Gene Name Synonym(s)=serine carboxypeptidase 26%2C Grain Size 5;Note=Serine carboxypeptidase%2C Positive regulator of grain size;Transcript_evidence=AK106800;ORF_evidence=Q5W727;GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Alpha/Beta hydrolase fold (IPR029058),Peptidase S10%2C serine carboxypeptidase (IPR001563),Serine carboxypeptidase%2C serine active site (IPR018202);NIAS_FLcDNA=002-116-B10;Manual Curation=September 21%2C 2017;Literature_PMID=25711711,22019783,16895613;Oryzabase=11971;Expression=AK106800;TENOR=Os05t0158500-01;KEGG=Os05t0158500-01 (EC:3.4.16.-);Subcellular location=cell surface (GO:0009986), endoplasmic reticulum (GO:0005783)
Chr05	irgsp1_rep	five_prime_UTR	3443604	3443769	.	-	.	Parent=Os05t0158500-01
Chr05	irgsp1_rep	CDS	3443312	3443603	.	-	0	Parent=Os05t0158500-01
Chr05	irgsp1_rep	CDS	3442765	3442872	.	-	2	Parent=Os05t0158500-01
Chr05	irgsp1_rep	CDS	3442538	3442633	.	-	2	Parent=Os05t0158500-01
Chr05	irgsp1_rep	CDS	3442318	3442410	.	-	2	Parent=Os05t0158500-01
Chr05	irgsp1_rep	CDS	3441290	3441378	.	-	2	Parent=Os05t0158500-01
Chr05	irgsp1_rep	CDS	3440515	3440787	.	-	0	Parent=Os05t0158500-01
Chr05	irgsp1_rep	CDS	3440281	3440429	.	-	0	Parent=Os05t0158500-01
Chr05	irgsp1_rep	CDS	3440085	3440180	.	-	1	Parent=Os05t0158500-01
Chr05	irgsp1_rep	CDS	3439752	3439857	.	-	1	Parent=Os05t0158500-01
Chr05	irgsp1_rep	CDS	3439511	3439657	.	-	0	Parent=Os05t0158500-01
Chr05	irgsp1_rep	three_prime_UTR	3439304	3439510	.	-	.	Parent=Os05t0158500-01
Chr05	irgsp1_rep	mRNA	3459576	3465989	.	+	.	ID=Os05t0158600-01;Name=Os05t0158600-01;Locus_id=Os05g0158600;CGSNL Gene Symbol=GA2OX1;CGSNL Gene Name=GIBBERELLIN 2-OXIDASE 1;Oryzabase Gene Symbol Synonym(s)=OsGA2ox1%2C ga2ox-1%2C OsGA2ox-1%2C ga2ox%2C ga2ox 1%2C GA2ox1;Oryzabase Gene Name Synonym(s)=rice GA 2-oxidase1%2C GA 2-oxidase 1%2C Gibberellin 2-oxidase 1;Note=Similar to OsGA2ox1.;Transcript_evidence=AK120967 (DDBJ%2C Best hit);ORF_evidence=Q9AVA5 (UniProt);NIAS_FLcDNA=J023040G12;Oryzabase=5114;Expression=AK120967;TENOR=Os05t0158600-01;KEGG=Os05t0158600-01
Chr05	irgsp1_rep	five_prime_UTR	3459576	3459660	.	+	.	Parent=Os05t0158600-01
Chr05	irgsp1_rep	CDS	3459661	3460137	.	+	0	Parent=Os05t0158600-01
Chr05	irgsp1_rep	three_prime_UTR	3460138	3464740	.	+	.	Parent=Os05t0158600-01
Chr05	irgsp1_rep	three_prime_UTR	3465258	3465989	.	+	.	Parent=Os05t0158600-01
Chr05	irgsp1_rep	mRNA	3459616	3465868	.	+	.	ID=Os05t0158600-02;Name=Os05t0158600-02;Locus_id=Os05g0158600;RAP-DB Gene Symbol Synonym(s)=GA2OX1%2C OsGA2ox1%2C ga2ox-1%2C OsGA2ox-1%2C ga2ox%2C ga2ox 1%2C GA2ox1;RAP-DB Gene Name Synonym(s)=GIBBERELLIN 2-OXIDASE 1%2C Oryza sativa GA 2-oxidase 1%2C rice GA 2-oxidase1%2C GA 2-oxidase 1%2C Gibberellin 2-oxidase 1;CGSNL Gene Symbol=GA2OX1;CGSNL Gene Name=GIBBERELLIN 2-OXIDASE 1;Oryzabase Gene Symbol Synonym(s)=OsGA2ox1%2C ga2ox-1%2C OsGA2ox-1%2C ga2ox%2C ga2ox 1%2C GA2ox1;Oryzabase Gene Name Synonym(s)=rice GA 2-oxidase1%2C GA 2-oxidase 1%2C Gibberellin 2-oxidase 1;Note=GA 2-oxidase1%2C GA metabolism;Transcript_evidence=AB059416 (Genbank);ORF_evidence=Q9AVA5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);Manual Curation=May 19%2C 2009;Literature_PMID=11244129,15075394;Oryzabase=5114
Chr05	irgsp1_rep	five_prime_UTR	3459616	3459660	.	+	.	Parent=Os05t0158600-02
Chr05	irgsp1_rep	CDS	3459661	3460103	.	+	0	Parent=Os05t0158600-02
Chr05	irgsp1_rep	CDS	3464314	3464740	.	+	1	Parent=Os05t0158600-02
Chr05	irgsp1_rep	CDS	3465258	3465536	.	+	0	Parent=Os05t0158600-02
Chr05	irgsp1_rep	three_prime_UTR	3465537	3465868	.	+	.	Parent=Os05t0158600-02
Chr05	irgsp1_rep	mRNA	3463587	3468689	.	-	.	ID=Os05t0158700-01;Name=Os05t0158700-01;Locus_id=Os05g0158700;Note=Similar to OsGA2ox1.;Transcript_evidence=AK101414 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033037L04;Expression=AK101414;TENOR=Os05t0158700-01;KEGG=Os05t0158700-01
Chr05	irgsp1_rep	five_prime_UTR	3468351	3468689	.	-	.	Parent=Os05t0158700-01
Chr05	irgsp1_rep	five_prime_UTR	3467007	3467076	.	-	.	Parent=Os05t0158700-01
Chr05	irgsp1_rep	five_prime_UTR	3466631	3466885	.	-	.	Parent=Os05t0158700-01
Chr05	irgsp1_rep	five_prime_UTR	3464000	3464757	.	-	.	Parent=Os05t0158700-01
Chr05	irgsp1_rep	CDS	3463658	3463999	.	-	0	Parent=Os05t0158700-01
Chr05	irgsp1_rep	three_prime_UTR	3463587	3463657	.	-	.	Parent=Os05t0158700-01
Chr05	irgsp1_rep	mRNA	3472328	3485081	.	+	.	ID=Os05t0159000-01;Name=Os05t0159000-01;Locus_id=Os05g0159000;Note=HECT domain containing protein.;Transcript_evidence=AK065411 (DDBJ%2C Best hit);ORF_evidence=NP_188346.2 (RefSeq);GO=Biological Process: protein modification process (GO:0006464),Cellular Component: intracellular (GO:0005622),Molecular Function: protein binding (GO:0005515),Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=IQ motif%2C EF-hand binding site (IPR000048),HECT (IPR000569);NIAS_FLcDNA=J013023N10;Expression=AK065411;TENOR=Os05t0159000-01;KEGG=Os05t0159000-01 (EC:6.3.2.19)
Chr05	irgsp1_rep	five_prime_UTR	3472328	3472456	.	+	.	Parent=Os05t0159000-01
Chr05	irgsp1_rep	five_prime_UTR	3472549	3472572	.	+	.	Parent=Os05t0159000-01
Chr05	irgsp1_rep	CDS	3472573	3472731	.	+	0	Parent=Os05t0159000-01
Chr05	irgsp1_rep	CDS	3473407	3473504	.	+	0	Parent=Os05t0159000-01
Chr05	irgsp1_rep	CDS	3473580	3473707	.	+	1	Parent=Os05t0159000-01
Chr05	irgsp1_rep	CDS	3474165	3474276	.	+	2	Parent=Os05t0159000-01
Chr05	irgsp1_rep	CDS	3474704	3474884	.	+	1	Parent=Os05t0159000-01
Chr05	irgsp1_rep	CDS	3475109	3475291	.	+	0	Parent=Os05t0159000-01
Chr05	irgsp1_rep	CDS	3475528	3475710	.	+	0	Parent=Os05t0159000-01
Chr05	irgsp1_rep	CDS	3476457	3476526	.	+	0	Parent=Os05t0159000-01
Chr05	irgsp1_rep	CDS	3476808	3476917	.	+	2	Parent=Os05t0159000-01
Chr05	irgsp1_rep	CDS	3476999	3477303	.	+	0	Parent=Os05t0159000-01
Chr05	irgsp1_rep	CDS	3477474	3477570	.	+	1	Parent=Os05t0159000-01
Chr05	irgsp1_rep	CDS	3478017	3478160	.	+	0	Parent=Os05t0159000-01
Chr05	irgsp1_rep	CDS	3478612	3478698	.	+	0	Parent=Os05t0159000-01
Chr05	irgsp1_rep	CDS	3478782	3478868	.	+	0	Parent=Os05t0159000-01
Chr05	irgsp1_rep	CDS	3478961	3479101	.	+	0	Parent=Os05t0159000-01
Chr05	irgsp1_rep	CDS	3479200	3479325	.	+	0	Parent=Os05t0159000-01
Chr05	irgsp1_rep	CDS	3479561	3479659	.	+	0	Parent=Os05t0159000-01
Chr05	irgsp1_rep	CDS	3480085	3480152	.	+	0	Parent=Os05t0159000-01
Chr05	irgsp1_rep	CDS	3480670	3480736	.	+	1	Parent=Os05t0159000-01
Chr05	irgsp1_rep	CDS	3481108	3481278	.	+	0	Parent=Os05t0159000-01
Chr05	irgsp1_rep	CDS	3481354	3481443	.	+	0	Parent=Os05t0159000-01
Chr05	irgsp1_rep	CDS	3482226	3482306	.	+	0	Parent=Os05t0159000-01
Chr05	irgsp1_rep	CDS	3483792	3483865	.	+	0	Parent=Os05t0159000-01
Chr05	irgsp1_rep	CDS	3484179	3484250	.	+	1	Parent=Os05t0159000-01
Chr05	irgsp1_rep	CDS	3484320	3484412	.	+	1	Parent=Os05t0159000-01
Chr05	irgsp1_rep	CDS	3484533	3484599	.	+	1	Parent=Os05t0159000-01
Chr05	irgsp1_rep	three_prime_UTR	3484600	3485081	.	+	.	Parent=Os05t0159000-01
Chr05	irgsp1_rep	mRNA	3489170	3492289	.	+	.	ID=Os05t0159100-01;Name=Os05t0159100-01;Locus_id=Os05g0159100;Note=Protein of unknown function DUF846%2C eukaryotic family protein.;Transcript_evidence=AK103137 (DDBJ%2C Best hit);ORF_evidence=B6SML9 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Protein of unknown function DUF846%2C eukaryotic (IPR008564);NIAS_FLcDNA=J033120E14;Expression=AK103137;TENOR=Os05t0159100-01;KEGG=Os05t0159100-01
Chr05	irgsp1_rep	five_prime_UTR	3489170	3489314	.	+	.	Parent=Os05t0159100-01
Chr05	irgsp1_rep	CDS	3489315	3489329	.	+	0	Parent=Os05t0159100-01
Chr05	irgsp1_rep	CDS	3489736	3489792	.	+	0	Parent=Os05t0159100-01
Chr05	irgsp1_rep	CDS	3489894	3490097	.	+	0	Parent=Os05t0159100-01
Chr05	irgsp1_rep	CDS	3490185	3490244	.	+	0	Parent=Os05t0159100-01
Chr05	irgsp1_rep	CDS	3491192	3491318	.	+	0	Parent=Os05t0159100-01
Chr05	irgsp1_rep	CDS	3491815	3491915	.	+	2	Parent=Os05t0159100-01
Chr05	irgsp1_rep	three_prime_UTR	3491916	3492289	.	+	.	Parent=Os05t0159100-01
Chr05	irgsp1_rep	mRNA	3492717	3496759	.	-	.	ID=Os05t0159200-01;Name=Os05t0159200-01;Locus_id=Os05g0159200;CGSNL Gene Symbol=GELP61;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 61;Oryzabase Gene Symbol Synonym(s)=OsGELP61;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 61;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK067837 (DDBJ%2C Best hit);ORF_evidence=B6TDT3 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=J013124E10;Oryzabase=11011;Expression=AK067837;TENOR=Os05t0159200-01;KEGG=Os05t0159200-01
Chr05	irgsp1_rep	five_prime_UTR	3496669	3496759	.	-	.	Parent=Os05t0159200-01
Chr05	irgsp1_rep	CDS	3496224	3496668	.	-	0	Parent=Os05t0159200-01
Chr05	irgsp1_rep	CDS	3494115	3494300	.	-	2	Parent=Os05t0159200-01
Chr05	irgsp1_rep	CDS	3493808	3493962	.	-	2	Parent=Os05t0159200-01
Chr05	irgsp1_rep	CDS	3493438	3493699	.	-	0	Parent=Os05t0159200-01
Chr05	irgsp1_rep	CDS	3493070	3493317	.	-	2	Parent=Os05t0159200-01
Chr05	irgsp1_rep	three_prime_UTR	3492717	3493069	.	-	.	Parent=Os05t0159200-01
Chr05	irgsp1_rep	mRNA	3493843	3494305	.	+	.	ID=Os05t0159250-00;Name=Os05t0159250-00;Locus_id=Os05g0159250;Note=Hypothetical gene.;Transcript_evidence=EU944832 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0159250-00;KEGG=Os05t0159250-00
Chr05	irgsp1_rep	five_prime_UTR	3493843	3493904	.	+	.	Parent=Os05t0159250-00
Chr05	irgsp1_rep	CDS	3493905	3494015	.	+	0	Parent=Os05t0159250-00
Chr05	irgsp1_rep	CDS	3494095	3494202	.	+	0	Parent=Os05t0159250-00
Chr05	irgsp1_rep	three_prime_UTR	3494203	3494305	.	+	.	Parent=Os05t0159250-00
Chr05	irgsp1_rep	mRNA	3499107	3500826	.	-	.	ID=Os05t0159300-01;Name=Os05t0159300-01;Locus_id=Os05g0159300;CGSNL Gene Symbol=GELP62;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 62;Oryzabase Gene Symbol Synonym(s)=OsGELP62%2C OsGELP62a%2C OsGELP62b%2C OsGELP62c%2C DARX1%2C OsDARX1;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 62%2C DEACETYLASE ON ARABINOSYL SIDECHAIN OF XYLAN1;Note=Similar to Alpha-L-fucosidase 2.;Transcript_evidence=AK070904 (DDBJ%2C Best hit);ORF_evidence=B6TQ14 (UniProt);NIAS_FLcDNA=J023065J01;Oryzabase=11012;TENOR=Os05t0159300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	3500725	3500826	.	-	.	Parent=Os05t0159300-01
Chr05	irgsp1_rep	CDS	3500416	3500724	.	-	0	Parent=Os05t0159300-01
Chr05	irgsp1_rep	three_prime_UTR	3500033	3500415	.	-	.	Parent=Os05t0159300-01
Chr05	irgsp1_rep	three_prime_UTR	3499107	3499632	.	-	.	Parent=Os05t0159300-01
Chr05	irgsp1_rep	mRNA	3499373	3507407	.	-	.	ID=Os05t0159300-02;Name=Os05t0159300-02;Locus_id=Os05g0159300;RAP-DB Gene Symbol Synonym(s)=DARX1%2C GELP62;RAP-DB Gene Name Synonym(s)=Deacetylase on Arabinosyl sidechain of Xylan1%2C GDSL esterase/lipase protein 62;CGSNL Gene Symbol=GELP62;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 62;Oryzabase Gene Symbol Synonym(s)=OsGELP62%2C OsGELP62a%2C OsGELP62b%2C OsGELP62c%2C DARX1%2C OsDARX1;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 62%2C DEACETYLASE ON ARABINOSYL SIDECHAIN OF XYLAN1;Note=Arabinosyl deacetylase%2C GDSL esterase%2C Modulation of secondary wall formation;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=SGNH hydrolase superfamily (IPR036514),GDSL lipase/esterase (IPR001087),GDSL lipase/esterase-like%2C plant (IPR035669);Manual Curation=April 24%2C 2019;Literature_PMID=30886126;Oryzabase=11012;Subcellular location=Golgi apparatus (GO:0005794)
Chr05	irgsp1_rep	CDS	3506909	3507407	.	-	0	Parent=Os05t0159300-02
Chr05	irgsp1_rep	CDS	3500762	3500947	.	-	2	Parent=Os05t0159300-02
Chr05	irgsp1_rep	CDS	3500473	3500627	.	-	2	Parent=Os05t0159300-02
Chr05	irgsp1_rep	CDS	3500033	3500303	.	-	0	Parent=Os05t0159300-02
Chr05	irgsp1_rep	CDS	3499373	3499632	.	-	2	Parent=Os05t0159300-02
Chr05	irgsp1_rep	mRNA	3500760	3500950	.	+	.	ID=Os05t0159400-00;Name=Os05t0159400-00;Locus_id=Os05g0159400;Note=Non-protein coding transcript.;Transcript_evidence=EU942788 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0159400-00
Chr05	irgsp1_rep	exon	3500760	3500950	.	+	.	Parent=Os05t0159400-00
Chr05	irgsp1_rep	mRNA	3501543	3502077	.	-	.	ID=Os05t0159501-00;Name=Os05t0159501-00;Locus_id=Os05g0159501;Note=Conserved hypothetical protein.;Transcript_evidence=CT837788 (DDBJ%2C Best hit);ORF_evidence=B9FQZ7 (UniProt);TENOR=Os05t0159501-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	3501968	3502077	.	-	.	Parent=Os05t0159501-00
Chr05	irgsp1_rep	CDS	3501830	3501967	.	-	0	Parent=Os05t0159501-00
Chr05	irgsp1_rep	three_prime_UTR	3501543	3501829	.	-	.	Parent=Os05t0159501-00
Chr05	irgsp1_rep	mRNA	3523599	3524212	.	+	.	ID=Os05t0159850-00;Name=Os05t0159850-00;Locus_id=Os05g0159850;Note=Similar to fasciclin-like arabinogalactan protein 8.;Transcript_evidence=EU963411 (DDBJ);ORF_evidence=NP_001149463.1 (RefSeq);TENOR=Os05t0159850-00
Chr05	irgsp1_rep	five_prime_UTR	3523599	3523690	.	+	.	Parent=Os05t0159850-00
Chr05	irgsp1_rep	CDS	3523691	3524212	.	+	0	Parent=Os05t0159850-00
Chr05	irgsp1_rep	mRNA	3529747	3530238	.	+	.	ID=Os05t0160000-01;Name=Os05t0160000-01;Locus_id=Os05g0160000;Oryzabase Gene Name Synonym(s)=Lipoamide dehydrogenase;Note=Similar to Ferric leghemoglobin reductase.;Transcript_evidence=AK063865 (DDBJ%2C Best hit);ORF_evidence=B9FML1 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: cytoplasm (GO:0005737),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Pyridine nucleotide-disulphide oxidoreductase%2C dimerisation (IPR004099),FAD/NAD-linked reductase%2C dimerisation (IPR016156);NIAS_FLcDNA=001-122-E03;Oryzabase=17640;Expression=AK063865;TENOR=Os05t0160000-01;KEGG=Os05t0160000-01 (EC:1.8.1.4)
Chr05	irgsp1_rep	five_prime_UTR	3529747	3529747	.	+	.	Parent=Os05t0160000-01
Chr05	irgsp1_rep	CDS	3529748	3529966	.	+	0	Parent=Os05t0160000-01
Chr05	irgsp1_rep	three_prime_UTR	3529967	3530238	.	+	.	Parent=Os05t0160000-01
Chr05	irgsp1_rep	mRNA	3531471	3534877	.	+	.	ID=Os05t0160100-01;Name=Os05t0160100-01;Locus_id=Os05g0160100;Note=CT11-RanBPM domain containing protein.;Transcript_evidence=AK073554 (DDBJ%2C Best hit);ORF_evidence=B6TF70 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=LisH dimerisation motif (IPR006594),CTLH%2C C-terminal LisH motif (IPR006595),Ran binding protein-like%2C CRA domain (IPR013144);NIAS_FLcDNA=J033044H19;Expression=AK073554;TENOR=Os05t0160100-01;KEGG=Os05t0160100-01
Chr05	irgsp1_rep	five_prime_UTR	3531471	3531548	.	+	.	Parent=Os05t0160100-01
Chr05	irgsp1_rep	CDS	3531549	3531842	.	+	0	Parent=Os05t0160100-01
Chr05	irgsp1_rep	CDS	3532059	3532253	.	+	0	Parent=Os05t0160100-01
Chr05	irgsp1_rep	CDS	3533014	3533136	.	+	0	Parent=Os05t0160100-01
Chr05	irgsp1_rep	CDS	3533640	3533825	.	+	0	Parent=Os05t0160100-01
Chr05	irgsp1_rep	CDS	3534028	3534161	.	+	0	Parent=Os05t0160100-01
Chr05	irgsp1_rep	CDS	3534261	3534447	.	+	1	Parent=Os05t0160100-01
Chr05	irgsp1_rep	CDS	3534574	3534675	.	+	0	Parent=Os05t0160100-01
Chr05	irgsp1_rep	three_prime_UTR	3534676	3534877	.	+	.	Parent=Os05t0160100-01
Chr05	irgsp1_rep	mRNA	3535342	3536076	.	+	.	ID=Os05t0160200-01;Name=Os05t0160200-01;Locus_id=Os05g0160200;Oryzabase Gene Symbol Synonym(s)=S27a;Oryzabase Gene Name Synonym(s)=ribosomal protein-linked ubiquitin%2C Ubiquitin/ribosomal protein S27a%2C ubiquitin fused to CEP80 gene;Note=Ubiquitin.;Transcript_evidence=AK119731 (DDBJ%2C Best hit);ORF_evidence=A6MZJ4 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735),Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin (IPR000626),Ribosomal protein S27a (IPR002906),Ubiquitin conserved site (IPR019954),Ubiquitin supergroup (IPR019955),Ubiquitin subgroup (IPR019956);NIAS_FLcDNA=002-158-A01;Oryzabase=13754;Expression=AK119731;TENOR=Os05t0160200-01;KEGG=Os05t0160200-01
Chr05	irgsp1_rep	five_prime_UTR	3535342	3535411	.	+	.	Parent=Os05t0160200-01
Chr05	irgsp1_rep	CDS	3535412	3535879	.	+	0	Parent=Os05t0160200-01
Chr05	irgsp1_rep	three_prime_UTR	3535880	3536076	.	+	.	Parent=Os05t0160200-01
Chr05	irgsp1_rep	mRNA	3539620	3540966	.	-	.	ID=Os05t0160300-01;Name=Os05t0160300-01;Locus_id=Os05g0160300;Oryzabase Gene Symbol Synonym(s)=OsLTPd8%2C OsLtpV.4%2C PI;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein d8%2C lipid transfer protein d8%2C type D non-specific lipid transfer protein 8%2C Protease inhibitor;Note=Bifunctional inhibitor/plant lipid transfer protein/seed storage domain containing protein.;Transcript_evidence=AK243590 (DDBJ%2C Best hit);ORF_evidence=B6UEB0 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=J100083F19;Oryzabase=13549;TENOR=Os05t0160300-01;KEGG=Os05t0160300-01
Chr05	irgsp1_rep	five_prime_UTR	3540868	3540966	.	-	.	Parent=Os05t0160300-01
Chr05	irgsp1_rep	CDS	3540531	3540867	.	-	0	Parent=Os05t0160300-01
Chr05	irgsp1_rep	CDS	3539838	3539854	.	-	2	Parent=Os05t0160300-01
Chr05	irgsp1_rep	three_prime_UTR	3539620	3539837	.	-	.	Parent=Os05t0160300-01
Chr05	irgsp1_rep	mRNA	3561007	3570684	.	-	.	ID=Os05t0160600-01;Name=Os05t0160600-01;Locus_id=Os05g0160600;Note=Peptidase cysteine/serine%2C trypsin-like domain containing protein.;Transcript_evidence=AK069632 (DDBJ%2C Best hit);ORF_evidence=B8AYE5 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Peptidase cysteine/serine%2C trypsin-like (IPR009003);NIAS_FLcDNA=J023024E20;TENOR=Os05t0160600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	3570683	3570684	.	-	.	Parent=Os05t0160600-01
Chr05	irgsp1_rep	CDS	3570658	3570682	.	-	0	Parent=Os05t0160600-01
Chr05	irgsp1_rep	CDS	3565150	3565277	.	-	2	Parent=Os05t0160600-01
Chr05	irgsp1_rep	CDS	3563422	3563694	.	-	0	Parent=Os05t0160600-01
Chr05	irgsp1_rep	CDS	3563210	3563340	.	-	0	Parent=Os05t0160600-01
Chr05	irgsp1_rep	CDS	3561814	3561931	.	-	1	Parent=Os05t0160600-01
Chr05	irgsp1_rep	CDS	3561655	3561747	.	-	0	Parent=Os05t0160600-01
Chr05	irgsp1_rep	CDS	3561501	3561575	.	-	0	Parent=Os05t0160600-01
Chr05	irgsp1_rep	CDS	3561345	3561422	.	-	0	Parent=Os05t0160600-01
Chr05	irgsp1_rep	CDS	3561244	3561261	.	-	0	Parent=Os05t0160600-01
Chr05	irgsp1_rep	three_prime_UTR	3561007	3561243	.	-	.	Parent=Os05t0160600-01
Chr05	irgsp1_rep	mRNA	3580709	3585641	.	+	.	ID=Os05t0160800-01;Name=Os05t0160800-01;Locus_id=Os05g0160800;Note=Similar to DNA polymerase epsilon subunit 2.;Transcript_evidence=AK073230 (DDBJ%2C Best hit);ORF_evidence=NP_001147081.1 (RefSeq);GO=Biological Process: DNA replication (GO:0006260),Biological Process: DNA-dependent DNA replication (GO:0006261),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed DNA polymerase activity (GO:0003887);InterPro=DNA polymerase alpha/epsilon%2C subunit B (IPR007185),DNA polymerase epsilon%2C subunit B (IPR016266);NIAS_FLcDNA=J033020F16;TENOR=Os05t0160800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	3580709	3580793	.	+	0	Parent=Os05t0160800-01
Chr05	irgsp1_rep	CDS	3580888	3581068	.	+	2	Parent=Os05t0160800-01
Chr05	irgsp1_rep	CDS	3581860	3582013	.	+	1	Parent=Os05t0160800-01
Chr05	irgsp1_rep	CDS	3582101	3582232	.	+	0	Parent=Os05t0160800-01
Chr05	irgsp1_rep	CDS	3582459	3582536	.	+	0	Parent=Os05t0160800-01
Chr05	irgsp1_rep	CDS	3582617	3582721	.	+	0	Parent=Os05t0160800-01
Chr05	irgsp1_rep	CDS	3582810	3582890	.	+	0	Parent=Os05t0160800-01
Chr05	irgsp1_rep	CDS	3582982	3583112	.	+	0	Parent=Os05t0160800-01
Chr05	irgsp1_rep	CDS	3583190	3583284	.	+	1	Parent=Os05t0160800-01
Chr05	irgsp1_rep	CDS	3583599	3583698	.	+	2	Parent=Os05t0160800-01
Chr05	irgsp1_rep	CDS	3584570	3584684	.	+	1	Parent=Os05t0160800-01
Chr05	irgsp1_rep	CDS	3584765	3584875	.	+	0	Parent=Os05t0160800-01
Chr05	irgsp1_rep	CDS	3585076	3585222	.	+	0	Parent=Os05t0160800-01
Chr05	irgsp1_rep	three_prime_UTR	3585223	3585641	.	+	.	Parent=Os05t0160800-01
Chr05	irgsp1_rep	mRNA	3606451	3606838	.	-	.	ID=Os05t0161100-01;Name=Os05t0161100-01;Locus_id=Os05g0161100;Note=Non-protein coding transcript.;Transcript_evidence=AK062481 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-103-G04;TENOR=Os05t0161100-01
Chr05	irgsp1_rep	exon	3606451	3606838	.	-	.	Parent=Os05t0161100-01
Chr05	irgsp1_rep	mRNA	3607502	3611371	.	+	.	ID=Os05t0161200-01;Name=Os05t0161200-01;Locus_id=Os05g0161200;Note=RelA/SpoT domain containing protein.;Transcript_evidence=AK121808 (DDBJ%2C Best hit);ORF_evidence=Q9AYT4 (UniProt);GO=Biological Process: guanosine tetraphosphate metabolic process (GO:0015969),Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),RelA/SpoT protein (IPR004811),RelA/SpoT (IPR007685),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J033097N14;Expression=AK121808;TENOR=Os05t0161200-01;KEGG=Os05t0161200-01
Chr05	irgsp1_rep	five_prime_UTR	3607502	3607570	.	+	.	Parent=Os05t0161200-01
Chr05	irgsp1_rep	CDS	3607571	3607972	.	+	0	Parent=Os05t0161200-01
Chr05	irgsp1_rep	CDS	3609020	3609952	.	+	0	Parent=Os05t0161200-01
Chr05	irgsp1_rep	CDS	3610641	3610919	.	+	0	Parent=Os05t0161200-01
Chr05	irgsp1_rep	CDS	3611019	3611156	.	+	0	Parent=Os05t0161200-01
Chr05	irgsp1_rep	three_prime_UTR	3611157	3611371	.	+	.	Parent=Os05t0161200-01
Chr05	irgsp1_rep	mRNA	3614640	3619081	.	+	.	ID=Os05t0161400-01;Name=Os05t0161400-01;Locus_id=Os05g0161400;Note=Peptidase%2C trypsin-like serine and cysteine domain containing protein.;Transcript_evidence=AK105485 (DDBJ%2C Best hit);ORF_evidence=A2Y0P1 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Peptidase cysteine/serine%2C trypsin-like (IPR009003);NIAS_FLcDNA=001-127-B06;Expression=AK105485;TENOR=Os05t0161400-01;KEGG=Os05t0161400-01
Chr05	irgsp1_rep	five_prime_UTR	3614640	3614978	.	+	.	Parent=Os05t0161400-01
Chr05	irgsp1_rep	CDS	3614979	3615003	.	+	0	Parent=Os05t0161400-01
Chr05	irgsp1_rep	CDS	3615358	3615501	.	+	2	Parent=Os05t0161400-01
Chr05	irgsp1_rep	CDS	3615596	3615723	.	+	2	Parent=Os05t0161400-01
Chr05	irgsp1_rep	CDS	3616018	3616293	.	+	0	Parent=Os05t0161400-01
Chr05	irgsp1_rep	CDS	3616471	3616601	.	+	0	Parent=Os05t0161400-01
Chr05	irgsp1_rep	CDS	3617187	3617304	.	+	1	Parent=Os05t0161400-01
Chr05	irgsp1_rep	CDS	3617375	3617467	.	+	0	Parent=Os05t0161400-01
Chr05	irgsp1_rep	CDS	3618044	3618118	.	+	0	Parent=Os05t0161400-01
Chr05	irgsp1_rep	CDS	3618208	3618285	.	+	0	Parent=Os05t0161400-01
Chr05	irgsp1_rep	CDS	3618714	3618728	.	+	0	Parent=Os05t0161400-01
Chr05	irgsp1_rep	three_prime_UTR	3618729	3619081	.	+	.	Parent=Os05t0161400-01
Chr05	irgsp1_rep	mRNA	3626394	3629080	.	+	.	ID=Os05t0161500-01;Name=Os05t0161500-01;Locus_id=Os05g0161500;Note=RelA/SpoT domain containing protein.;Transcript_evidence=AK058438 (DDBJ%2C Best hit);ORF_evidence=A7VL54 (UniProt);GO=Biological Process: guanosine tetraphosphate metabolic process (GO:0015969),Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),RelA/SpoT protein (IPR004811),RelA/SpoT (IPR007685),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=001-015-F09;Expression=AK058438;TENOR=Os05t0161500-01;KEGG=Os05t0161500-01
Chr05	irgsp1_rep	five_prime_UTR	3626394	3626545	.	+	.	Parent=Os05t0161500-01
Chr05	irgsp1_rep	CDS	3626546	3627775	.	+	0	Parent=Os05t0161500-01
Chr05	irgsp1_rep	CDS	3628272	3628583	.	+	0	Parent=Os05t0161500-01
Chr05	irgsp1_rep	CDS	3628713	3628850	.	+	0	Parent=Os05t0161500-01
Chr05	irgsp1_rep	three_prime_UTR	3628851	3629080	.	+	.	Parent=Os05t0161500-01
Chr05	irgsp1_rep	mRNA	3638122	3639997	.	-	.	ID=Os05t0161700-01;Name=Os05t0161700-01;Locus_id=Os05g0161700;Note=Hypothetical protein.;Transcript_evidence=AK110850 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-172-C05;Expression=AK110850;TENOR=Os05t0161700-01;KEGG=Os05t0161700-01
Chr05	irgsp1_rep	five_prime_UTR	3638730	3639997	.	-	.	Parent=Os05t0161700-01
Chr05	irgsp1_rep	CDS	3638232	3638729	.	-	0	Parent=Os05t0161700-01
Chr05	irgsp1_rep	three_prime_UTR	3638122	3638231	.	-	.	Parent=Os05t0161700-01
Chr05	irgsp1_rep	mRNA	3638255	3640497	.	+	.	ID=Os05t0161800-01;Name=Os05t0161800-01;Locus_id=Os05g0161800;CGSNL Gene Symbol=CRSH3;CGSNL Gene Name=Ca2+-ACTIVATED RELA-SPOT HOMOLOG 3;Oryzabase Gene Symbol Synonym(s)=OsCRSH3;Oryzabase Gene Name Synonym(s)=calcium activating hyperphosphorylated guanine synthetase 3%2C Calcium-activated (p)ppGpp Synthetase 3%2C chloroplastic (p)ppGpp synthetase 3%2C Ca2+-activated RelA-SpoT homolog 3;Note=RelA/SpoT domain containing protein.;Transcript_evidence=AK289182 (DDBJ%2C Best hit);ORF_evidence=A7VL54 (UniProt);GO=Biological Process: guanosine tetraphosphate metabolic process (GO:0015969),Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),RelA/SpoT protein (IPR004811),RelA/SpoT (IPR007685),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J100030J18;Oryzabase=7175;TENOR=Os05t0161800-01;KEGG=Os05t0161800-01
Chr05	irgsp1_rep	five_prime_UTR	3638255	3638322	.	+	.	Parent=Os05t0161800-01
Chr05	irgsp1_rep	CDS	3638323	3639921	.	+	0	Parent=Os05t0161800-01
Chr05	irgsp1_rep	CDS	3640090	3640227	.	+	0	Parent=Os05t0161800-01
Chr05	irgsp1_rep	three_prime_UTR	3640228	3640497	.	+	.	Parent=Os05t0161800-01
Chr05	irgsp1_rep	mRNA	3645962	3648067	.	-	.	ID=Os05t0162000-01;Name=Os05t0162000-01;Locus_id=Os05g0162000;CGSNL Gene Symbol=PRX72;CGSNL Gene Name=PEROXIDASE 72;Oryzabase Gene Symbol Synonym(s)=prx72%2C OsPrx72;Oryzabase Gene Name Synonym(s)=class III peroxidase 72%2C Os-peroxidase 1%2C peroxidase 1;Note=Similar to Peroxidase (Fragment).;Transcript_evidence=AK067416 (DDBJ%2C Best hit),AK102154 (DDBJ%2C Best hit);ORF_evidence=Q5U1M1 (UniProt);NIAS_FLcDNA=J013102I07,J033086E17;Oryzabase=14596;TENOR=Os05t0162000-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	3648028	3648067	.	-	.	Parent=Os05t0162000-01
Chr05	irgsp1_rep	CDS	3647815	3648027	.	-	0	Parent=Os05t0162000-01
Chr05	irgsp1_rep	CDS	3647112	3647552	.	-	0	Parent=Os05t0162000-01
Chr05	irgsp1_rep	CDS	3646197	3646622	.	-	0	Parent=Os05t0162000-01
Chr05	irgsp1_rep	three_prime_UTR	3645962	3646196	.	-	.	Parent=Os05t0162000-01
Chr05	irgsp1_rep	mRNA	3652664	3663546	.	-	.	ID=Os05t0162200-01;Name=Os05t0162200-01;Locus_id=Os05g0162200;Note=Conserved hypothetical protein.;Transcript_evidence=AK099832 (DDBJ%2C Best hit);ORF_evidence=B9FML9 (UniProt);NIAS_FLcDNA=J013106A22;Expression=AK099832;TENOR=Os05t0162200-01;KEGG=Os05t0162200-01
Chr05	irgsp1_rep	five_prime_UTR	3663378	3663546	.	-	.	Parent=Os05t0162200-01
Chr05	irgsp1_rep	CDS	3663246	3663377	.	-	0	Parent=Os05t0162200-01
Chr05	irgsp1_rep	CDS	3660163	3660360	.	-	0	Parent=Os05t0162200-01
Chr05	irgsp1_rep	CDS	3659930	3660025	.	-	0	Parent=Os05t0162200-01
Chr05	irgsp1_rep	CDS	3659723	3659775	.	-	0	Parent=Os05t0162200-01
Chr05	irgsp1_rep	CDS	3658611	3658707	.	-	1	Parent=Os05t0162200-01
Chr05	irgsp1_rep	CDS	3658228	3658301	.	-	0	Parent=Os05t0162200-01
Chr05	irgsp1_rep	CDS	3657864	3657870	.	-	1	Parent=Os05t0162200-01
Chr05	irgsp1_rep	three_prime_UTR	3657758	3657863	.	-	.	Parent=Os05t0162200-01
Chr05	irgsp1_rep	three_prime_UTR	3656969	3657079	.	-	.	Parent=Os05t0162200-01
Chr05	irgsp1_rep	three_prime_UTR	3656511	3656587	.	-	.	Parent=Os05t0162200-01
Chr05	irgsp1_rep	three_prime_UTR	3655959	3656025	.	-	.	Parent=Os05t0162200-01
Chr05	irgsp1_rep	three_prime_UTR	3655386	3655451	.	-	.	Parent=Os05t0162200-01
Chr05	irgsp1_rep	three_prime_UTR	3654540	3654647	.	-	.	Parent=Os05t0162200-01
Chr05	irgsp1_rep	three_prime_UTR	3654319	3654449	.	-	.	Parent=Os05t0162200-01
Chr05	irgsp1_rep	three_prime_UTR	3654089	3654155	.	-	.	Parent=Os05t0162200-01
Chr05	irgsp1_rep	three_prime_UTR	3653942	3654009	.	-	.	Parent=Os05t0162200-01
Chr05	irgsp1_rep	three_prime_UTR	3653767	3653860	.	-	.	Parent=Os05t0162200-01
Chr05	irgsp1_rep	three_prime_UTR	3653392	3653462	.	-	.	Parent=Os05t0162200-01
Chr05	irgsp1_rep	three_prime_UTR	3652664	3653292	.	-	.	Parent=Os05t0162200-01
Chr05	irgsp1_rep	mRNA	3652664	3663545	.	-	.	ID=Os05t0162200-02;Name=Os05t0162200-02;Locus_id=Os05g0162200;Note=Conserved hypothetical protein.;Transcript_evidence=AK072427 (DDBJ%2C Best hit);ORF_evidence=B9FML9 (UniProt);NIAS_FLcDNA=J023089J15;Expression=AK072427;TENOR=Os05t0162200-02;KEGG=Os05t0162200-02
Chr05	irgsp1_rep	five_prime_UTR	3663378	3663545	.	-	.	Parent=Os05t0162200-02
Chr05	irgsp1_rep	CDS	3663246	3663377	.	-	0	Parent=Os05t0162200-02
Chr05	irgsp1_rep	CDS	3660163	3660360	.	-	0	Parent=Os05t0162200-02
Chr05	irgsp1_rep	CDS	3659930	3660025	.	-	0	Parent=Os05t0162200-02
Chr05	irgsp1_rep	CDS	3659723	3659775	.	-	0	Parent=Os05t0162200-02
Chr05	irgsp1_rep	CDS	3658611	3658707	.	-	1	Parent=Os05t0162200-02
Chr05	irgsp1_rep	CDS	3658228	3658301	.	-	0	Parent=Os05t0162200-02
Chr05	irgsp1_rep	CDS	3657758	3657875	.	-	1	Parent=Os05t0162200-02
Chr05	irgsp1_rep	CDS	3656969	3657079	.	-	0	Parent=Os05t0162200-02
Chr05	irgsp1_rep	CDS	3656511	3656587	.	-	0	Parent=Os05t0162200-02
Chr05	irgsp1_rep	CDS	3655959	3656025	.	-	1	Parent=Os05t0162200-02
Chr05	irgsp1_rep	CDS	3655386	3655451	.	-	0	Parent=Os05t0162200-02
Chr05	irgsp1_rep	CDS	3654540	3654647	.	-	0	Parent=Os05t0162200-02
Chr05	irgsp1_rep	CDS	3654319	3654449	.	-	0	Parent=Os05t0162200-02
Chr05	irgsp1_rep	CDS	3654089	3654155	.	-	1	Parent=Os05t0162200-02
Chr05	irgsp1_rep	CDS	3653942	3654009	.	-	0	Parent=Os05t0162200-02
Chr05	irgsp1_rep	CDS	3653767	3653860	.	-	1	Parent=Os05t0162200-02
Chr05	irgsp1_rep	CDS	3653392	3653462	.	-	0	Parent=Os05t0162200-02
Chr05	irgsp1_rep	CDS	3652950	3653292	.	-	1	Parent=Os05t0162200-02
Chr05	irgsp1_rep	three_prime_UTR	3652664	3652949	.	-	.	Parent=Os05t0162200-02
Chr05	irgsp1_rep	mRNA	3652902	3663378	.	+	.	ID=Os05t0162350-00;Name=Os05t0162350-00;Locus_id=Os05g0162350;Note=Hypothetical protein.;Transcript_evidence=tplb0049m08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0162350-00
Chr05	irgsp1_rep	five_prime_UTR	3652902	3653088	.	+	.	Parent=Os05t0162350-00
Chr05	irgsp1_rep	CDS	3653089	3653304	.	+	0	Parent=Os05t0162350-00
Chr05	irgsp1_rep	three_prime_UTR	3653305	3653313	.	+	.	Parent=Os05t0162350-00
Chr05	irgsp1_rep	three_prime_UTR	3653414	3653462	.	+	.	Parent=Os05t0162350-00
Chr05	irgsp1_rep	three_prime_UTR	3653767	3653846	.	+	.	Parent=Os05t0162350-00
Chr05	irgsp1_rep	three_prime_UTR	3653930	3654061	.	+	.	Parent=Os05t0162350-00
Chr05	irgsp1_rep	three_prime_UTR	3654303	3654443	.	+	.	Parent=Os05t0162350-00
Chr05	irgsp1_rep	three_prime_UTR	3654537	3654634	.	+	.	Parent=Os05t0162350-00
Chr05	irgsp1_rep	three_prime_UTR	3655376	3655450	.	+	.	Parent=Os05t0162350-00
Chr05	irgsp1_rep	three_prime_UTR	3655958	3656024	.	+	.	Parent=Os05t0162350-00
Chr05	irgsp1_rep	three_prime_UTR	3656510	3656607	.	+	.	Parent=Os05t0162350-00
Chr05	irgsp1_rep	three_prime_UTR	3656990	3657094	.	+	.	Parent=Os05t0162350-00
Chr05	irgsp1_rep	three_prime_UTR	3657775	3657860	.	+	.	Parent=Os05t0162350-00
Chr05	irgsp1_rep	three_prime_UTR	3658213	3658303	.	+	.	Parent=Os05t0162350-00
Chr05	irgsp1_rep	three_prime_UTR	3658614	3658734	.	+	.	Parent=Os05t0162350-00
Chr05	irgsp1_rep	three_prime_UTR	3659906	3660023	.	+	.	Parent=Os05t0162350-00
Chr05	irgsp1_rep	three_prime_UTR	3660155	3660364	.	+	.	Parent=Os05t0162350-00
Chr05	irgsp1_rep	three_prime_UTR	3663234	3663378	.	+	.	Parent=Os05t0162350-00
Chr05	irgsp1_rep	mRNA	3670229	3673750	.	+	.	ID=Os05t0162500-01;Name=Os05t0162500-01;Locus_id=Os05g0162500;Oryzabase Gene Symbol Synonym(s)=OsCrRLK1L10;Oryzabase Gene Name Synonym(s)=Catharanthus roseus receptor-like kinase1-like kinase 10;Note=Protein kinase-like domain containing protein.;Transcript_evidence=AK067124 (DDBJ%2C Best hit);ORF_evidence=Q75IR9 (UniProt);NIAS_FLcDNA=J013098L04;Oryzabase=18679;Expression=AK067124;TENOR=Os05t0162500-01;KEGG=Os05t0162500-01
Chr05	irgsp1_rep	five_prime_UTR	3670229	3670443	.	+	.	Parent=Os05t0162500-01
Chr05	irgsp1_rep	five_prime_UTR	3670603	3671002	.	+	.	Parent=Os05t0162500-01
Chr05	irgsp1_rep	CDS	3671003	3671049	.	+	0	Parent=Os05t0162500-01
Chr05	irgsp1_rep	CDS	3673198	3673531	.	+	1	Parent=Os05t0162500-01
Chr05	irgsp1_rep	three_prime_UTR	3673532	3673750	.	+	.	Parent=Os05t0162500-01
Chr05	irgsp1_rep	mRNA	3674074	3678244	.	-	.	ID=Os05t0162600-01;Name=Os05t0162600-01;Locus_id=Os05g0162600;CGSNL Gene Symbol=RSZP39;Oryzabase Gene Symbol Synonym(s)=Os-RS2Z39%2C OsRS2Z39%2C Os-RSZ39%2C OsRSZ39;Oryzabase Gene Name Synonym(s)=RS domain with zinc knuckle protein 39%2C RSZ subfamily protein 39%2C RS2Z subfamily protein 39;Note=Similar to Splicing factor RSZ33.;Transcript_evidence=AK121854 (DDBJ%2C Best hit),AK063518 (DDBJ%2C Best hit);ORF_evidence=A2Y0P9 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA recognition motif domain (IPR000504),Zinc finger%2C CCHC-type (IPR001878),Nucleotide-binding%2C alpha-beta plait (IPR012677),Zinc finger%2C CCHC retroviral-type (IPR013084);NIAS_FLcDNA=J033102C01,001-116-H05;Oryzabase=22749;Expression=AK121854;TENOR=Os05t0162600-01;KEGG=Os05t0162600-01
Chr05	irgsp1_rep	five_prime_UTR	3678135	3678244	.	-	.	Parent=Os05t0162600-01
Chr05	irgsp1_rep	five_prime_UTR	3677252	3677256	.	-	.	Parent=Os05t0162600-01
Chr05	irgsp1_rep	CDS	3677124	3677251	.	-	0	Parent=Os05t0162600-01
Chr05	irgsp1_rep	CDS	3676185	3676224	.	-	1	Parent=Os05t0162600-01
Chr05	irgsp1_rep	CDS	3675957	3676052	.	-	0	Parent=Os05t0162600-01
Chr05	irgsp1_rep	CDS	3675549	3675742	.	-	0	Parent=Os05t0162600-01
Chr05	irgsp1_rep	CDS	3675402	3675467	.	-	1	Parent=Os05t0162600-01
Chr05	irgsp1_rep	CDS	3674406	3674898	.	-	1	Parent=Os05t0162600-01
Chr05	irgsp1_rep	three_prime_UTR	3674074	3674405	.	-	.	Parent=Os05t0162600-01
Chr05	irgsp1_rep	mRNA	3679907	3681238	.	-	.	ID=Os05t0162800-00;Name=Os05t0162800-00;Locus_id=Os05g0162800;Note=SANT domain%2C DNA binding domain containing protein.;Transcript_evidence=AK359577 (DDBJ);ORF_evidence=B9FHP5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);Oryzabase=22529;TENOR=Os05t0162800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	3681218	3681238	.	-	.	Parent=Os05t0162800-00
Chr05	irgsp1_rep	CDS	3681093	3681217	.	-	0	Parent=Os05t0162800-00
Chr05	irgsp1_rep	CDS	3680950	3681007	.	-	1	Parent=Os05t0162800-00
Chr05	irgsp1_rep	CDS	3680538	3680808	.	-	0	Parent=Os05t0162800-00
Chr05	irgsp1_rep	CDS	3680082	3680203	.	-	2	Parent=Os05t0162800-00
Chr05	irgsp1_rep	CDS	3679932	3679976	.	-	0	Parent=Os05t0162800-00
Chr05	irgsp1_rep	three_prime_UTR	3679907	3679931	.	-	.	Parent=Os05t0162800-00
Chr05	irgsp1_rep	mRNA	3690011	3697450	.	+	.	ID=Os05t0163000-01;Name=Os05t0163000-01;Locus_id=Os05g0163000;Oryzabase Gene Name Synonym(s)=Arginine%3BtRNA ligase;Note=Arginyl-tRNA synthetase%2C class Ic family protein.;Transcript_evidence=AK066161 (DDBJ%2C Best hit);ORF_evidence=NP_001148134.1 (RefSeq);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: arginyl-tRNA aminoacylation (GO:0006420),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: arginine-tRNA ligase activity (GO:0004814),Molecular Function: ATP binding (GO:0005524);InterPro=Arginyl-tRNA synthetase%2C class Ia (IPR001278),Aminoacyl-tRNA synthetase%2C class I%2C conserved site (IPR001412),Arginyl tRNA synthetase%2C class Ia%2C N-terminal (IPR005148),DALR anticodon binding (IPR008909),Aminoacyl-tRNA synthetase%2C class 1a%2C anticodon-binding (IPR009080),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Arginyl-tRNA synthetase%2C class Ia%2C core (IPR015945);NIAS_FLcDNA=J013052F22;Oryzabase=16687;Expression=AK066161;TENOR=Os05t0163000-01;KEGG=Os05t0163000-01 (EC:6.1.1.19)
Chr05	irgsp1_rep	five_prime_UTR	3690011	3690123	.	+	.	Parent=Os05t0163000-01
Chr05	irgsp1_rep	five_prime_UTR	3690554	3690612	.	+	.	Parent=Os05t0163000-01
Chr05	irgsp1_rep	CDS	3690613	3690669	.	+	0	Parent=Os05t0163000-01
Chr05	irgsp1_rep	CDS	3690778	3690902	.	+	0	Parent=Os05t0163000-01
Chr05	irgsp1_rep	CDS	3691030	3691105	.	+	1	Parent=Os05t0163000-01
Chr05	irgsp1_rep	CDS	3691279	3691380	.	+	0	Parent=Os05t0163000-01
Chr05	irgsp1_rep	CDS	3691470	3691685	.	+	0	Parent=Os05t0163000-01
Chr05	irgsp1_rep	CDS	3692612	3692692	.	+	0	Parent=Os05t0163000-01
Chr05	irgsp1_rep	CDS	3693547	3693630	.	+	0	Parent=Os05t0163000-01
Chr05	irgsp1_rep	CDS	3693800	3693904	.	+	0	Parent=Os05t0163000-01
Chr05	irgsp1_rep	CDS	3694733	3694911	.	+	0	Parent=Os05t0163000-01
Chr05	irgsp1_rep	CDS	3695076	3695160	.	+	1	Parent=Os05t0163000-01
Chr05	irgsp1_rep	CDS	3695284	3695485	.	+	0	Parent=Os05t0163000-01
Chr05	irgsp1_rep	CDS	3695560	3695629	.	+	2	Parent=Os05t0163000-01
Chr05	irgsp1_rep	CDS	3695748	3695817	.	+	1	Parent=Os05t0163000-01
Chr05	irgsp1_rep	CDS	3696140	3696229	.	+	0	Parent=Os05t0163000-01
Chr05	irgsp1_rep	CDS	3696415	3696483	.	+	0	Parent=Os05t0163000-01
Chr05	irgsp1_rep	CDS	3696915	3697013	.	+	0	Parent=Os05t0163000-01
Chr05	irgsp1_rep	CDS	3697199	3697309	.	+	0	Parent=Os05t0163000-01
Chr05	irgsp1_rep	three_prime_UTR	3697310	3697450	.	+	.	Parent=Os05t0163000-01
Chr05	irgsp1_rep	mRNA	3689968	3697377	.	-	.	ID=Os05t0163050-00;Name=Os05t0163050-00;Locus_id=Os05g0163050;Note=Hypothetical protein.;Transcript_evidence=tplb0044b06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0163050-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	3697192	3697377	.	-	.	Parent=Os05t0163050-00
Chr05	irgsp1_rep	five_prime_UTR	3696897	3697006	.	-	.	Parent=Os05t0163050-00
Chr05	irgsp1_rep	five_prime_UTR	3696414	3696465	.	-	.	Parent=Os05t0163050-00
Chr05	irgsp1_rep	five_prime_UTR	3696148	3696228	.	-	.	Parent=Os05t0163050-00
Chr05	irgsp1_rep	five_prime_UTR	3695744	3695823	.	-	.	Parent=Os05t0163050-00
Chr05	irgsp1_rep	five_prime_UTR	3695559	3695622	.	-	.	Parent=Os05t0163050-00
Chr05	irgsp1_rep	five_prime_UTR	3695282	3695484	.	-	.	Parent=Os05t0163050-00
Chr05	irgsp1_rep	five_prime_UTR	3695080	3695153	.	-	.	Parent=Os05t0163050-00
Chr05	irgsp1_rep	five_prime_UTR	3694731	3694919	.	-	.	Parent=Os05t0163050-00
Chr05	irgsp1_rep	five_prime_UTR	3693795	3693902	.	-	.	Parent=Os05t0163050-00
Chr05	irgsp1_rep	five_prime_UTR	3693545	3693624	.	-	.	Parent=Os05t0163050-00
Chr05	irgsp1_rep	five_prime_UTR	3692609	3692686	.	-	.	Parent=Os05t0163050-00
Chr05	irgsp1_rep	five_prime_UTR	3691625	3691682	.	-	.	Parent=Os05t0163050-00
Chr05	irgsp1_rep	CDS	3691460	3691624	.	-	0	Parent=Os05t0163050-00
Chr05	irgsp1_rep	CDS	3691294	3691367	.	-	0	Parent=Os05t0163050-00
Chr05	irgsp1_rep	CDS	3691052	3691121	.	-	1	Parent=Os05t0163050-00
Chr05	irgsp1_rep	three_prime_UTR	3691029	3691051	.	-	.	Parent=Os05t0163050-00
Chr05	irgsp1_rep	three_prime_UTR	3690770	3690901	.	-	.	Parent=Os05t0163050-00
Chr05	irgsp1_rep	three_prime_UTR	3690541	3690670	.	-	.	Parent=Os05t0163050-00
Chr05	irgsp1_rep	three_prime_UTR	3689968	3690099	.	-	.	Parent=Os05t0163050-00
Chr05	irgsp1_rep	mRNA	3697765	3702359	.	-	.	ID=Os05t0163100-01;Name=Os05t0163100-01;Locus_id=Os05g0163100;Note=Similar to PHD finger protein.;Transcript_evidence=AK061479 (DDBJ%2C Best hit);ORF_evidence=B6TMJ0 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-type%2C conserved site (IPR019786),Zinc finger%2C PHD-finger (IPR019787),Protein of unknown function DUF3594 (IPR021998);NIAS_FLcDNA=006-308-G07;Expression=AK061479;TENOR=Os05t0163100-01;KEGG=Os05t0163100-01
Chr05	irgsp1_rep	CDS	3702111	3702359	.	-	0	Parent=Os05t0163100-01
Chr05	irgsp1_rep	CDS	3701987	3702019	.	-	0	Parent=Os05t0163100-01
Chr05	irgsp1_rep	CDS	3701774	3701890	.	-	0	Parent=Os05t0163100-01
Chr05	irgsp1_rep	CDS	3701668	3701687	.	-	0	Parent=Os05t0163100-01
Chr05	irgsp1_rep	CDS	3698473	3698599	.	-	1	Parent=Os05t0163100-01
Chr05	irgsp1_rep	CDS	3698136	3698390	.	-	0	Parent=Os05t0163100-01
Chr05	irgsp1_rep	three_prime_UTR	3697765	3698135	.	-	.	Parent=Os05t0163100-01
Chr05	irgsp1_rep	mRNA	3697909	3702354	.	-	.	ID=Os05t0163100-02;Name=Os05t0163100-02;Locus_id=Os05g0163100;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK071548 (DDBJ%2C Best hit);ORF_evidence=B6TMJ0 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-type%2C conserved site (IPR019786),Zinc finger%2C PHD-finger (IPR019787),Protein of unknown function DUF3594 (IPR021998);NIAS_FLcDNA=J023104P18;Expression=AK071548;TENOR=Os05t0163100-02;KEGG=Os05t0163100-02
Chr05	irgsp1_rep	five_prime_UTR	3702250	3702354	.	-	.	Parent=Os05t0163100-02
Chr05	irgsp1_rep	CDS	3702111	3702249	.	-	0	Parent=Os05t0163100-02
Chr05	irgsp1_rep	CDS	3701987	3702019	.	-	2	Parent=Os05t0163100-02
Chr05	irgsp1_rep	CDS	3701668	3701890	.	-	2	Parent=Os05t0163100-02
Chr05	irgsp1_rep	CDS	3698473	3698599	.	-	1	Parent=Os05t0163100-02
Chr05	irgsp1_rep	CDS	3698136	3698390	.	-	0	Parent=Os05t0163100-02
Chr05	irgsp1_rep	three_prime_UTR	3697909	3698135	.	-	.	Parent=Os05t0163100-02
Chr05	irgsp1_rep	mRNA	3704404	3704671	.	-	.	ID=Os05t0163200-01;Name=Os05t0163200-01;Locus_id=Os05g0163200;Note=Non-protein coding transcript.;Transcript_evidence=AK242452 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080096N11;TENOR=Os05t0163200-01
Chr05	irgsp1_rep	exon	3704404	3704671	.	-	.	Parent=Os05t0163200-01
Chr05	irgsp1_rep	mRNA	3710810	3714723	.	-	.	ID=Os05t0163250-01;Name=Os05t0163250-01;Locus_id=Os05g0163250;Note=Similar to predicted protein.;Transcript_evidence=AK242741 (DDBJ%2C Best hit);ORF_evidence=NP_178124.1 (RefSeq);GO=Biological Process: nuclear mRNA splicing%2C via spliceosome (GO:0000398),Cellular Component: spliceosomal complex (GO:0005681);InterPro=Pre-mRNA-processing-splicing factor 8 (IPR012591),PROCN (IPR012592);NIAS_FLcDNA=J090049M14;TENOR=Os05t0163250-01
Chr05	irgsp1_rep	five_prime_UTR	3714553	3714723	.	-	.	Parent=Os05t0163250-01
Chr05	irgsp1_rep	CDS	3714266	3714552	.	-	0	Parent=Os05t0163250-01
Chr05	irgsp1_rep	CDS	3713213	3713336	.	-	1	Parent=Os05t0163250-01
Chr05	irgsp1_rep	CDS	3713016	3713108	.	-	0	Parent=Os05t0163250-01
Chr05	irgsp1_rep	CDS	3712438	3712828	.	-	0	Parent=Os05t0163250-01
Chr05	irgsp1_rep	CDS	3711211	3711700	.	-	2	Parent=Os05t0163250-01
Chr05	irgsp1_rep	CDS	3710810	3711100	.	-	1	Parent=Os05t0163250-01
Chr05	irgsp1_rep	mRNA	3715778	3716891	.	-	.	ID=Os05t0163300-01;Name=Os05t0163300-01;Locus_id=Os05g0163300;CGSNL Gene Symbol=FLA9;CGSNL Gene Name=FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 9;Oryzabase Gene Symbol Synonym(s)=OsFLA9;Oryzabase Gene Name Synonym(s)=fasciclin-like AGP 9%2C fasciclin-like arabinogalactan protein 9;Note=Similar to Arabinogalactan protein-like.;Transcript_evidence=AK105598 (DDBJ%2C Best hit);ORF_evidence=Q06I89 (UniProt);InterPro=FAS1 domain (IPR000782);NIAS_FLcDNA=001-200-A03;Oryzabase=11344;Expression=AK105598;TENOR=Os05t0163300-01;KEGG=Os05t0163300-01
Chr05	irgsp1_rep	five_prime_UTR	3716859	3716891	.	-	.	Parent=Os05t0163300-01
Chr05	irgsp1_rep	CDS	3716031	3716858	.	-	0	Parent=Os05t0163300-01
Chr05	irgsp1_rep	three_prime_UTR	3715778	3716030	.	-	.	Parent=Os05t0163300-01
Chr05	irgsp1_rep	mRNA	3718329	3725414	.	-	.	ID=Os05t0163400-01;Name=Os05t0163400-01;Locus_id=Os05g0163400;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK073342 (DDBJ%2C Best hit);ORF_evidence=B9FMM2 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J033030D14;Expression=AK073342;TENOR=Os05t0163400-01;KEGG=Os05t0163400-01
Chr05	irgsp1_rep	five_prime_UTR	3725221	3725414	.	-	.	Parent=Os05t0163400-01
Chr05	irgsp1_rep	five_prime_UTR	3720854	3720887	.	-	.	Parent=Os05t0163400-01
Chr05	irgsp1_rep	CDS	3720772	3720853	.	-	0	Parent=Os05t0163400-01
Chr05	irgsp1_rep	CDS	3719992	3720675	.	-	2	Parent=Os05t0163400-01
Chr05	irgsp1_rep	CDS	3719197	3719648	.	-	2	Parent=Os05t0163400-01
Chr05	irgsp1_rep	CDS	3719017	3719115	.	-	0	Parent=Os05t0163400-01
Chr05	irgsp1_rep	CDS	3718789	3718935	.	-	0	Parent=Os05t0163400-01
Chr05	irgsp1_rep	CDS	3718548	3718685	.	-	0	Parent=Os05t0163400-01
Chr05	irgsp1_rep	three_prime_UTR	3718329	3718547	.	-	.	Parent=Os05t0163400-01
Chr05	irgsp1_rep	mRNA	3722036	3725381	.	-	.	ID=Os05t0163400-02;Name=Os05t0163400-02;Locus_id=Os05g0163400;Note=Non-protein coding transcript.;Transcript_evidence=AK106311 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-101-D04;TENOR=Os05t0163400-02
Chr05	irgsp1_rep	exon	3725221	3725381	.	-	.	Parent=Os05t0163400-02
Chr05	irgsp1_rep	exon	3723863	3723992	.	-	.	Parent=Os05t0163400-02
Chr05	irgsp1_rep	exon	3723581	3723773	.	-	.	Parent=Os05t0163400-02
Chr05	irgsp1_rep	exon	3722036	3723229	.	-	.	Parent=Os05t0163400-02
Chr05	irgsp1_rep	mRNA	3718368	3725296	.	-	.	ID=Os05t0163400-03;Name=Os05t0163400-03;Locus_id=Os05g0163400;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK120340 (DDBJ%2C Best hit);ORF_evidence=B9FMM2 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J013060N21;Expression=AK120340;TENOR=Os05t0163400-03;KEGG=Os05t0163400-03
Chr05	irgsp1_rep	five_prime_UTR	3720854	3725296	.	-	.	Parent=Os05t0163400-03
Chr05	irgsp1_rep	CDS	3720772	3720853	.	-	0	Parent=Os05t0163400-03
Chr05	irgsp1_rep	CDS	3719992	3720675	.	-	2	Parent=Os05t0163400-03
Chr05	irgsp1_rep	CDS	3719197	3719648	.	-	2	Parent=Os05t0163400-03
Chr05	irgsp1_rep	CDS	3719017	3719115	.	-	0	Parent=Os05t0163400-03
Chr05	irgsp1_rep	CDS	3718789	3718935	.	-	0	Parent=Os05t0163400-03
Chr05	irgsp1_rep	CDS	3718548	3718685	.	-	0	Parent=Os05t0163400-03
Chr05	irgsp1_rep	three_prime_UTR	3718368	3718547	.	-	.	Parent=Os05t0163400-03
Chr05	irgsp1_rep	mRNA	3727041	3729430	.	-	.	ID=Os05t0163500-00;Name=Os05t0163500-00;Locus_id=Os05g0163500;CGSNL Gene Symbol=RLCK179;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 179;Oryzabase Gene Symbol Synonym(s)=OsRLCK179;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 179;Note=Similar to H0525E10.2 protein.;Transcript_evidence=BT053773 (DDBJ);ORF_evidence=Q01K06 (UniProt);GO=Biological Process: recognition of pollen (GO:0048544),Molecular Function: sugar binding (GO:0005529);InterPro=S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),PAN-2 domain (IPR013227);Oryzabase=18880;TENOR=Os05t0163500-00;KEGG=Os05t0163500-00
Chr05	irgsp1_rep	CDS	3728168	3729430	.	-	0	Parent=Os05t0163500-00
Chr05	irgsp1_rep	three_prime_UTR	3727681	3728167	.	-	.	Parent=Os05t0163500-00
Chr05	irgsp1_rep	three_prime_UTR	3727041	3727612	.	-	.	Parent=Os05t0163500-00
Chr05	irgsp1_rep	mRNA	3728395	3729818	.	+	.	ID=Os05t0163600-01;Name=Os05t0163600-01;Locus_id=Os05g0163600;Note=Hypothetical protein.;Transcript_evidence=AK064541 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-112-A07;Expression=AK064541;TENOR=Os05t0163600-01;KEGG=Os05t0163600-01
Chr05	irgsp1_rep	five_prime_UTR	3728395	3729215	.	+	.	Parent=Os05t0163600-01
Chr05	irgsp1_rep	CDS	3729216	3729716	.	+	0	Parent=Os05t0163600-01
Chr05	irgsp1_rep	three_prime_UTR	3729717	3729818	.	+	.	Parent=Os05t0163600-01
Chr05	irgsp1_rep	mRNA	3730639	3735239	.	-	.	ID=Os05t0163700-01;Name=Os05t0163700-01;Locus_id=Os05g0163700;CGSNL Gene Symbol=ACX4;CGSNL Gene Name=ACYL-COA OXIDASE 4;Oryzabase Gene Symbol Synonym(s)=OsACX4;Oryzabase Gene Name Synonym(s)=acyl-CoA oxidase 4;Note=Similar to Acyl-coenzyme A oxidase 4%2C peroxisomal (EC 1.3.3.6) (AOX 4) (Short- chain acyl-CoA oxidase) (SAOX) (AtCX4) (G6p) (AtG6).;Transcript_evidence=AK071561 (DDBJ%2C Best hit);ORF_evidence=NP_001148492.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995),Molecular Function: oxidoreductase activity%2C acting on the CH-CH group of donors (GO:0016627),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Acyl-CoA dehydrogenase%2C conserved site (IPR006089),Acyl-CoA oxidase/dehydrogenase%2C type 1 (IPR006090),Acyl-CoA oxidase/dehydrogenase%2C central domain (IPR006091),Acyl-CoA dehydrogenase%2C N-terminal (IPR006092),Acyl-CoA dehydrogenase/oxidase C-terminal (IPR009075),Acyl-CoA dehydrogenase/oxidase (IPR009100),Acyl-CoA dehydrogenase/oxidase%2C N-terminal (IPR013786);NIAS_FLcDNA=J023099O18;Oryzabase=22013;Expression=AK071561;TENOR=Os05t0163700-01;KEGG=Os05t0163700-01 (EC:1.3.3.6%2C EC:1.3.99.7)
Chr05	irgsp1_rep	five_prime_UTR	3735119	3735239	.	-	.	Parent=Os05t0163700-01
Chr05	irgsp1_rep	CDS	3735103	3735118	.	-	0	Parent=Os05t0163700-01
Chr05	irgsp1_rep	CDS	3734901	3734993	.	-	2	Parent=Os05t0163700-01
Chr05	irgsp1_rep	CDS	3733622	3733728	.	-	2	Parent=Os05t0163700-01
Chr05	irgsp1_rep	CDS	3733317	3733394	.	-	0	Parent=Os05t0163700-01
Chr05	irgsp1_rep	CDS	3733072	3733195	.	-	0	Parent=Os05t0163700-01
Chr05	irgsp1_rep	CDS	3732887	3732960	.	-	2	Parent=Os05t0163700-01
Chr05	irgsp1_rep	CDS	3732716	3732775	.	-	0	Parent=Os05t0163700-01
Chr05	irgsp1_rep	CDS	3732499	3732608	.	-	0	Parent=Os05t0163700-01
Chr05	irgsp1_rep	CDS	3732214	3732373	.	-	1	Parent=Os05t0163700-01
Chr05	irgsp1_rep	CDS	3732021	3732097	.	-	0	Parent=Os05t0163700-01
Chr05	irgsp1_rep	CDS	3731761	3731932	.	-	1	Parent=Os05t0163700-01
Chr05	irgsp1_rep	CDS	3731547	3731639	.	-	0	Parent=Os05t0163700-01
Chr05	irgsp1_rep	CDS	3730792	3730920	.	-	0	Parent=Os05t0163700-01
Chr05	irgsp1_rep	three_prime_UTR	3730639	3730791	.	-	.	Parent=Os05t0163700-01
Chr05	irgsp1_rep	mRNA	3756476	3759787	.	+	.	ID=Os05t0163900-01;Name=Os05t0163900-01;Locus_id=Os05g0163900;Oryzabase Gene Symbol Synonym(s)=OsbHLH036;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 036;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=AK110619 (DDBJ%2C Best hit);ORF_evidence=NP_001152068.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: amino acid binding (GO:0016597);InterPro=Amino acid-binding ACT (IPR002912),Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=002-168-H12;Oryzabase=15327;Expression=AK110619;TENOR=Os05t0163900-01;KEGG=Os05t0163900-01
Chr05	irgsp1_rep	five_prime_UTR	3756476	3756553	.	+	.	Parent=Os05t0163900-01
Chr05	irgsp1_rep	five_prime_UTR	3756785	3756834	.	+	.	Parent=Os05t0163900-01
Chr05	irgsp1_rep	CDS	3756835	3757125	.	+	0	Parent=Os05t0163900-01
Chr05	irgsp1_rep	CDS	3759153	3759677	.	+	0	Parent=Os05t0163900-01
Chr05	irgsp1_rep	three_prime_UTR	3759678	3759787	.	+	.	Parent=Os05t0163900-01
Chr05	irgsp1_rep	mRNA	3756764	3757113	.	-	.	ID=Os05t0164000-00;Name=Os05t0164000-00;Locus_id=Os05g0164000;Note=Hypothetical protein.;Transcript_evidence=AK376655 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0164000-00
Chr05	irgsp1_rep	five_prime_UTR	3756995	3757113	.	-	.	Parent=Os05t0164000-00
Chr05	irgsp1_rep	CDS	3756764	3756994	.	-	0	Parent=Os05t0164000-00
Chr05	irgsp1_rep	mRNA	3763113	3771453	.	+	.	ID=Os05t0164100-01;Name=Os05t0164100-01;Locus_id=Os05g0164100;Oryzabase Gene Symbol Synonym(s)=OsF2KP1;Oryzabase Gene Name Synonym(s)=fructose-6-phosphate-2-kinase/fructose-2%2C 6-bisphosphatase 1%2C F6P2K/F26BPase1;Note=Similar to Fructose-6-phosphate 2-kinase/fructose-2%2C6-bisphosphatase (EC 2.7.1.105) (EC 3.1.3.46) (Fragment).;Transcript_evidence=AK072243 (DDBJ%2C Best hit);ORF_evidence=Q8W170 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: fructose metabolic process (GO:0006000),Biological Process: fructose 2%2C6-bisphosphate metabolic process (GO:0006003),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: 6-phosphofructo-2-kinase activity (GO:0003873),Molecular Function: fructose-2%2C6-bisphosphate 2-phosphatase activity (GO:0004331),Molecular Function: ATP binding (GO:0005524),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Phosphoglycerate/bisphosphoglycerate mutase%2C active site (IPR001345),Glycoside hydrolase%2C carbohydrate-binding (IPR002044),Fructose-2%2C6-bisphosphatase (IPR003094),Histidine phosphatase superfamily%2C clade-1 (IPR013078),6-phosphofructo-2-kinase (IPR013079),Immunoglobulin-like fold (IPR013783),Carbohydrate-binding-like fold (IPR013784),Bifunctional 6-phosphofructo-2-kinase/fructose-2%2C 6-bisphosphate 2-phosphatase (IPR016260);NIAS_FLcDNA=J023003N10;Oryzabase=15780;Expression=AK072243;TENOR=Os05t0164100-01;KEGG=Os05t0164100-01 (EC:2.7.1.105%2C EC:3.1.3.46)
Chr05	irgsp1_rep	five_prime_UTR	3763113	3763165	.	+	.	Parent=Os05t0164100-01
Chr05	irgsp1_rep	CDS	3763166	3763411	.	+	0	Parent=Os05t0164100-01
Chr05	irgsp1_rep	CDS	3763528	3763591	.	+	0	Parent=Os05t0164100-01
Chr05	irgsp1_rep	CDS	3764152	3764450	.	+	2	Parent=Os05t0164100-01
Chr05	irgsp1_rep	CDS	3765061	3765276	.	+	0	Parent=Os05t0164100-01
Chr05	irgsp1_rep	CDS	3765611	3765817	.	+	0	Parent=Os05t0164100-01
Chr05	irgsp1_rep	CDS	3766089	3766184	.	+	0	Parent=Os05t0164100-01
Chr05	irgsp1_rep	CDS	3766493	3766591	.	+	0	Parent=Os05t0164100-01
Chr05	irgsp1_rep	CDS	3766695	3766724	.	+	0	Parent=Os05t0164100-01
Chr05	irgsp1_rep	CDS	3767280	3767333	.	+	0	Parent=Os05t0164100-01
Chr05	irgsp1_rep	CDS	3767928	3767981	.	+	0	Parent=Os05t0164100-01
Chr05	irgsp1_rep	CDS	3768053	3768130	.	+	0	Parent=Os05t0164100-01
Chr05	irgsp1_rep	CDS	3768322	3768413	.	+	0	Parent=Os05t0164100-01
Chr05	irgsp1_rep	CDS	3768488	3768545	.	+	1	Parent=Os05t0164100-01
Chr05	irgsp1_rep	CDS	3768643	3768717	.	+	0	Parent=Os05t0164100-01
Chr05	irgsp1_rep	CDS	3769325	3769372	.	+	0	Parent=Os05t0164100-01
Chr05	irgsp1_rep	CDS	3769526	3769623	.	+	0	Parent=Os05t0164100-01
Chr05	irgsp1_rep	CDS	3769841	3769916	.	+	1	Parent=Os05t0164100-01
Chr05	irgsp1_rep	CDS	3770054	3770116	.	+	0	Parent=Os05t0164100-01
Chr05	irgsp1_rep	CDS	3770205	3770296	.	+	0	Parent=Os05t0164100-01
Chr05	irgsp1_rep	CDS	3770602	3770670	.	+	1	Parent=Os05t0164100-01
Chr05	irgsp1_rep	CDS	3770805	3770868	.	+	1	Parent=Os05t0164100-01
Chr05	irgsp1_rep	CDS	3770940	3771005	.	+	0	Parent=Os05t0164100-01
Chr05	irgsp1_rep	CDS	3771095	3771172	.	+	0	Parent=Os05t0164100-01
Chr05	irgsp1_rep	three_prime_UTR	3771173	3771453	.	+	.	Parent=Os05t0164100-01
Chr05	irgsp1_rep	mRNA	3763118	3771415	.	+	.	ID=Os05t0164100-02;Name=Os05t0164100-02;Locus_id=Os05g0164100;Oryzabase Gene Symbol Synonym(s)=OsF2KP1;Oryzabase Gene Name Synonym(s)=fructose-6-phosphate-2-kinase/fructose-2%2C 6-bisphosphatase 1%2C F6P2K/F26BPase1;Note=Similar to Fructose-6-phosphate-2-kinase/fructose-2%2C 6-bisphosphatase.;Transcript_evidence=AK065086 (DDBJ%2C Best hit);ORF_evidence=Q8W170 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: fructose metabolic process (GO:0006000),Biological Process: fructose 2%2C6-bisphosphate metabolic process (GO:0006003),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: 6-phosphofructo-2-kinase activity (GO:0003873),Molecular Function: fructose-2%2C6-bisphosphate 2-phosphatase activity (GO:0004331),Molecular Function: ATP binding (GO:0005524),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Phosphoglycerate/bisphosphoglycerate mutase%2C active site (IPR001345),Glycoside hydrolase%2C carbohydrate-binding (IPR002044),Fructose-2%2C6-bisphosphatase (IPR003094),Histidine phosphatase superfamily%2C clade-1 (IPR013078),6-phosphofructo-2-kinase (IPR013079),Immunoglobulin-like fold (IPR013783),Carbohydrate-binding-like fold (IPR013784),Bifunctional 6-phosphofructo-2-kinase/fructose-2%2C 6-bisphosphate 2-phosphatase (IPR016260);NIAS_FLcDNA=J013001L18;Oryzabase=15780;Expression=AK065086;TENOR=Os05t0164100-02;KEGG=Os05t0164100-02 (EC:2.7.1.105%2C EC:3.1.3.46)
Chr05	irgsp1_rep	five_prime_UTR	3763118	3763165	.	+	.	Parent=Os05t0164100-02
Chr05	irgsp1_rep	CDS	3763166	3763411	.	+	0	Parent=Os05t0164100-02
Chr05	irgsp1_rep	CDS	3763528	3763591	.	+	0	Parent=Os05t0164100-02
Chr05	irgsp1_rep	CDS	3764152	3764450	.	+	2	Parent=Os05t0164100-02
Chr05	irgsp1_rep	CDS	3765061	3765276	.	+	0	Parent=Os05t0164100-02
Chr05	irgsp1_rep	CDS	3765611	3765817	.	+	0	Parent=Os05t0164100-02
Chr05	irgsp1_rep	CDS	3766092	3766184	.	+	0	Parent=Os05t0164100-02
Chr05	irgsp1_rep	CDS	3766493	3766591	.	+	0	Parent=Os05t0164100-02
Chr05	irgsp1_rep	CDS	3766695	3766724	.	+	0	Parent=Os05t0164100-02
Chr05	irgsp1_rep	CDS	3767280	3767333	.	+	0	Parent=Os05t0164100-02
Chr05	irgsp1_rep	CDS	3767928	3767981	.	+	0	Parent=Os05t0164100-02
Chr05	irgsp1_rep	CDS	3768053	3768130	.	+	0	Parent=Os05t0164100-02
Chr05	irgsp1_rep	CDS	3768322	3768413	.	+	0	Parent=Os05t0164100-02
Chr05	irgsp1_rep	CDS	3768488	3768545	.	+	1	Parent=Os05t0164100-02
Chr05	irgsp1_rep	CDS	3768643	3768717	.	+	0	Parent=Os05t0164100-02
Chr05	irgsp1_rep	CDS	3769325	3769372	.	+	0	Parent=Os05t0164100-02
Chr05	irgsp1_rep	CDS	3769526	3769623	.	+	0	Parent=Os05t0164100-02
Chr05	irgsp1_rep	CDS	3769841	3769916	.	+	1	Parent=Os05t0164100-02
Chr05	irgsp1_rep	CDS	3770054	3770116	.	+	0	Parent=Os05t0164100-02
Chr05	irgsp1_rep	CDS	3770205	3770296	.	+	0	Parent=Os05t0164100-02
Chr05	irgsp1_rep	CDS	3770602	3770670	.	+	1	Parent=Os05t0164100-02
Chr05	irgsp1_rep	CDS	3770805	3770868	.	+	1	Parent=Os05t0164100-02
Chr05	irgsp1_rep	CDS	3770940	3771005	.	+	0	Parent=Os05t0164100-02
Chr05	irgsp1_rep	CDS	3771095	3771172	.	+	0	Parent=Os05t0164100-02
Chr05	irgsp1_rep	three_prime_UTR	3771173	3771415	.	+	.	Parent=Os05t0164100-02
Chr05	irgsp1_rep	mRNA	3767947	3771394	.	+	.	ID=Os05t0164100-03;Name=Os05t0164100-03;Locus_id=Os05g0164100;Oryzabase Gene Symbol Synonym(s)=OsF2KP1;Oryzabase Gene Name Synonym(s)=fructose-6-phosphate-2-kinase/fructose-2%2C 6-bisphosphatase 1%2C F6P2K/F26BPase1;Note=Similar to Fructose-6-phosphate-2-kinase/fructose-2%2C 6-bisphosphatase.;Transcript_evidence=AK105066 (DDBJ%2C Best hit);ORF_evidence=Q8W170 (UniProt);GO=Biological Process: fructose metabolic process (GO:0006000),Biological Process: fructose 2%2C6-bisphosphate metabolic process (GO:0006003),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: 6-phosphofructo-2-kinase activity (GO:0003873),Molecular Function: fructose-2%2C6-bisphosphate 2-phosphatase activity (GO:0004331),Molecular Function: ATP binding (GO:0005524);InterPro=Phosphoglycerate/bisphosphoglycerate mutase%2C active site (IPR001345),Fructose-2%2C6-bisphosphatase (IPR003094),Histidine phosphatase superfamily%2C clade-1 (IPR013078),6-phosphofructo-2-kinase (IPR013079),Bifunctional 6-phosphofructo-2-kinase/fructose-2%2C 6-bisphosphate 2-phosphatase (IPR016260);NIAS_FLcDNA=001-044-F12;Oryzabase=15780;Expression=AK105066;TENOR=Os05t0164100-03;KEGG=Os05t0164100-03 (EC:2.7.1.105%2C EC:3.1.3.46)
Chr05	irgsp1_rep	five_prime_UTR	3767947	3767948	.	+	.	Parent=Os05t0164100-03
Chr05	irgsp1_rep	CDS	3767949	3767981	.	+	0	Parent=Os05t0164100-03
Chr05	irgsp1_rep	CDS	3768053	3768130	.	+	0	Parent=Os05t0164100-03
Chr05	irgsp1_rep	CDS	3768322	3768413	.	+	0	Parent=Os05t0164100-03
Chr05	irgsp1_rep	CDS	3768488	3768545	.	+	1	Parent=Os05t0164100-03
Chr05	irgsp1_rep	CDS	3768643	3768717	.	+	0	Parent=Os05t0164100-03
Chr05	irgsp1_rep	CDS	3769325	3769372	.	+	0	Parent=Os05t0164100-03
Chr05	irgsp1_rep	CDS	3769526	3769623	.	+	0	Parent=Os05t0164100-03
Chr05	irgsp1_rep	CDS	3769841	3769916	.	+	1	Parent=Os05t0164100-03
Chr05	irgsp1_rep	CDS	3770054	3770116	.	+	0	Parent=Os05t0164100-03
Chr05	irgsp1_rep	CDS	3770205	3770296	.	+	0	Parent=Os05t0164100-03
Chr05	irgsp1_rep	CDS	3770602	3770670	.	+	1	Parent=Os05t0164100-03
Chr05	irgsp1_rep	CDS	3770805	3770868	.	+	1	Parent=Os05t0164100-03
Chr05	irgsp1_rep	CDS	3770940	3771005	.	+	0	Parent=Os05t0164100-03
Chr05	irgsp1_rep	CDS	3771095	3771172	.	+	0	Parent=Os05t0164100-03
Chr05	irgsp1_rep	three_prime_UTR	3771173	3771394	.	+	.	Parent=Os05t0164100-03
Chr05	irgsp1_rep	mRNA	3772400	3773096	.	+	.	ID=Os05t0164200-01;Name=Os05t0164200-01;Locus_id=Os05g0164200;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK107797 (DDBJ%2C Best hit);ORF_evidence=NP_001151934.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=002-133-D11;Expression=AK107797;TENOR=Os05t0164200-01;KEGG=Os05t0164200-01
Chr05	irgsp1_rep	five_prime_UTR	3772400	3772469	.	+	.	Parent=Os05t0164200-01
Chr05	irgsp1_rep	CDS	3772470	3773006	.	+	0	Parent=Os05t0164200-01
Chr05	irgsp1_rep	three_prime_UTR	3773007	3773096	.	+	.	Parent=Os05t0164200-01
Chr05	irgsp1_rep	mRNA	3808044	3810780	.	-	.	ID=Os05t0164800-01;Name=Os05t0164800-01;Locus_id=Os05g0164800;RAP-DB Gene Symbol Synonym(s)=ZIP6%2C OsZIP6;RAP-DB Gene Name Synonym(s)=ZINC TRANSPORTER 6%2C zinc transporter 6%2C Zrt-Irt-like protein 6%2C Zinc-regulated transporter 6;CGSNL Gene Symbol=ZIP6;CGSNL Gene Name=ZINC TRANSPORTER 6;Oryzabase Gene Symbol Synonym(s)=OsZIP6;Oryzabase Gene Name Synonym(s)=zinc transporter 6%2C Zrt-Irt-like protein 6%2C Zinc-regulated transporter 6;Note=Transition metal ion transporter%2C Ion transport;Transcript_evidence=AK120502,AB126088;ORF_evidence=Q6L8F9;GO=Biological Process: metal ion transport (GO:0030001),Biological Process: transmembrane transport (GO:0055085),Biological Process: zinc II ion transmembrane transport (GO:0071577),Molecular Function: zinc ion transmembrane transporter activity (GO:0005385),Molecular Function: metal ion transmembrane transporter activity (GO:0046873),Cellular Component: membrane (GO:0016020),Cellular Component: integral component of membrane (GO:0016021);InterPro=Zinc/iron permease (IPR003689),Zinc/iron permease%2C fungal/plant (IPR004698);NIAS_FLcDNA=J013122I02;Manual Curation=November 5%2C 2015;Literature_PMID=26476396,16263903;Oryzabase=8377;Expression=AK120502;TENOR=Os05t0164800-01;KEGG=Os05t0164800-01
Chr05	irgsp1_rep	five_prime_UTR	3810701	3810780	.	-	.	Parent=Os05t0164800-01
Chr05	irgsp1_rep	CDS	3809828	3810700	.	-	0	Parent=Os05t0164800-01
Chr05	irgsp1_rep	CDS	3808178	3808492	.	-	0	Parent=Os05t0164800-01
Chr05	irgsp1_rep	three_prime_UTR	3808044	3808177	.	-	.	Parent=Os05t0164800-01
Chr05	irgsp1_rep	mRNA	3807974	3810752	.	-	.	ID=Os05t0164800-02;Name=Os05t0164800-02;Locus_id=Os05g0164800;CGSNL Gene Symbol=ZIP6;CGSNL Gene Name=ZINC TRANSPORTER 6;Oryzabase Gene Symbol Synonym(s)=OsZIP6;Oryzabase Gene Name Synonym(s)=zinc transporter 6%2C Zrt-Irt-like protein 6%2C Zinc-regulated transporter 6;Note=Similar to Zinc transporter 6%2C chloroplast precursor (ZRT/IRT-like protein 6).;Transcript_evidence=AK103730 (DDBJ%2C Best hit);ORF_evidence=Q6L8F9 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Biological Process: transmembrane transport (GO:0055085),Biological Process: zinc ion transmembrane transport (GO:0071577),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: zinc ion transmembrane transporter activity (GO:0005385),Molecular Function: metal ion transmembrane transporter activity (GO:0046873);InterPro=Zinc/iron permease (IPR003689),Zinc/iron permease%2C fungal/plant (IPR004698);NIAS_FLcDNA=J033138E20;Oryzabase=8377;Expression=AK103730;TENOR=Os05t0164800-02;KEGG=Os05t0164800-02
Chr05	irgsp1_rep	five_prime_UTR	3810701	3810752	.	-	.	Parent=Os05t0164800-02
Chr05	irgsp1_rep	CDS	3809828	3810700	.	-	0	Parent=Os05t0164800-02
Chr05	irgsp1_rep	CDS	3808178	3808492	.	-	0	Parent=Os05t0164800-02
Chr05	irgsp1_rep	three_prime_UTR	3807974	3808177	.	-	.	Parent=Os05t0164800-02
Chr05	irgsp1_rep	mRNA	3813306	3819768	.	-	.	ID=Os05t0164900-01;Name=Os05t0164900-01;Locus_id=Os05g0164900;Note=Kelch repeat type 1 domain containing protein.;Transcript_evidence=AK072587 (DDBJ%2C Best hit);ORF_evidence=B9FMN1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Kelch repeat type 1 (IPR006652),Development/cell death domain (IPR013989),Kelch-type beta propeller (IPR015915);NIAS_FLcDNA=J023132E02;TENOR=Os05t0164900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	3819580	3819768	.	-	0	Parent=Os05t0164900-01
Chr05	irgsp1_rep	CDS	3818338	3818500	.	-	0	Parent=Os05t0164900-01
Chr05	irgsp1_rep	CDS	3817934	3818115	.	-	2	Parent=Os05t0164900-01
Chr05	irgsp1_rep	CDS	3816050	3817828	.	-	0	Parent=Os05t0164900-01
Chr05	irgsp1_rep	CDS	3815858	3815914	.	-	0	Parent=Os05t0164900-01
Chr05	irgsp1_rep	CDS	3815070	3815415	.	-	0	Parent=Os05t0164900-01
Chr05	irgsp1_rep	CDS	3814784	3814983	.	-	2	Parent=Os05t0164900-01
Chr05	irgsp1_rep	CDS	3814267	3814343	.	-	0	Parent=Os05t0164900-01
Chr05	irgsp1_rep	CDS	3814087	3814188	.	-	1	Parent=Os05t0164900-01
Chr05	irgsp1_rep	CDS	3813793	3813979	.	-	1	Parent=Os05t0164900-01
Chr05	irgsp1_rep	CDS	3813616	3813705	.	-	0	Parent=Os05t0164900-01
Chr05	irgsp1_rep	three_prime_UTR	3813306	3813615	.	-	.	Parent=Os05t0164900-01
Chr05	irgsp1_rep	mRNA	3832980	3833802	.	+	.	ID=Os05t0165200-00;Name=Os05t0165200-00;Locus_id=Os05g0165200;Note=Similar to predicted protein.;Transcript_evidence=AK369894 (DDBJ);ORF_evidence=Q6F2T0 (UniProt);TENOR=Os05t0165200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	3832980	3833027	.	+	.	Parent=Os05t0165200-00
Chr05	irgsp1_rep	CDS	3833028	3833540	.	+	0	Parent=Os05t0165200-00
Chr05	irgsp1_rep	three_prime_UTR	3833541	3833575	.	+	.	Parent=Os05t0165200-00
Chr05	irgsp1_rep	three_prime_UTR	3833645	3833802	.	+	.	Parent=Os05t0165200-00
Chr05	irgsp1_rep	mRNA	3839686	3843157	.	+	.	ID=Os05t0165400-01;Name=Os05t0165400-01;Locus_id=Os05g0165400;Note=GPI-GlcNAc transferase complex%2C PIG-H component%2C conserved domain domain containing protein.;Transcript_evidence=AK105515 (DDBJ%2C Best hit);ORF_evidence=B8AYF6 (UniProt);GO=Molecular Function: phosphatidylinositol N-acetylglucosaminyltransferase activity (GO:0017176);InterPro=GPI-GlcNAc transferase complex%2C PIG-H component%2C conserved domain (IPR019328);NIAS_FLcDNA=001-127-F03;Expression=AK105515;TENOR=Os05t0165400-01;KEGG=Os05t0165400-01
Chr05	irgsp1_rep	five_prime_UTR	3839686	3840062	.	+	.	Parent=Os05t0165400-01
Chr05	irgsp1_rep	five_prime_UTR	3840673	3840776	.	+	.	Parent=Os05t0165400-01
Chr05	irgsp1_rep	CDS	3840777	3840802	.	+	0	Parent=Os05t0165400-01
Chr05	irgsp1_rep	CDS	3840997	3841180	.	+	1	Parent=Os05t0165400-01
Chr05	irgsp1_rep	CDS	3841565	3841649	.	+	0	Parent=Os05t0165400-01
Chr05	irgsp1_rep	CDS	3841795	3841849	.	+	2	Parent=Os05t0165400-01
Chr05	irgsp1_rep	CDS	3842528	3842666	.	+	1	Parent=Os05t0165400-01
Chr05	irgsp1_rep	CDS	3842742	3842858	.	+	0	Parent=Os05t0165400-01
Chr05	irgsp1_rep	three_prime_UTR	3842859	3843157	.	+	.	Parent=Os05t0165400-01
Chr05	irgsp1_rep	mRNA	3843670	3845603	.	-	.	ID=Os05t0165450-00;Name=Os05t0165450-00;Locus_id=Os05g0165450;Note=Similar to predicted protein.;Transcript_evidence=FP095831 (DDBJ);ORF_evidence=NP_850141.1 (RefSeq);InterPro=Lateral organ boundaries%2C LOB (IPR004883);TENOR=Os05t0165450-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	3845262	3845603	.	-	0	Parent=Os05t0165450-00
Chr05	irgsp1_rep	CDS	3843774	3844178	.	-	0	Parent=Os05t0165450-00
Chr05	irgsp1_rep	three_prime_UTR	3843670	3843773	.	-	.	Parent=Os05t0165450-00
Chr05	irgsp1_rep	mRNA	3858170	3859257	.	-	.	ID=Os05t0165500-01;Name=Os05t0165500-01;Locus_id=Os05g0165500;Note=Conserved hypothetical protein.;Transcript_evidence=AK109061 (DDBJ%2C Best hit);ORF_evidence=A2Y0R6 (UniProt);NIAS_FLcDNA=002-154-F04;Expression=AK109061;TENOR=Os05t0165500-01;KEGG=Os05t0165500-01
Chr05	irgsp1_rep	five_prime_UTR	3859005	3859257	.	-	.	Parent=Os05t0165500-01
Chr05	irgsp1_rep	CDS	3858321	3859004	.	-	0	Parent=Os05t0165500-01
Chr05	irgsp1_rep	three_prime_UTR	3858170	3858320	.	-	.	Parent=Os05t0165500-01
Chr05	irgsp1_rep	mRNA	3856578	3859228	.	-	.	ID=Os05t0165500-02;Name=Os05t0165500-02;Locus_id=Os05g0165500;Note=Conserved hypothetical protein.;Transcript_evidence=AK288171 (DDBJ%2C Best hit);ORF_evidence=NP_001054746.1 (RefSeq);NIAS_FLcDNA=J090003G12;TENOR=Os05t0165500-02;KEGG=Os05t0165500-02
Chr05	irgsp1_rep	five_prime_UTR	3859005	3859228	.	-	.	Parent=Os05t0165500-02
Chr05	irgsp1_rep	CDS	3858321	3859004	.	-	0	Parent=Os05t0165500-02
Chr05	irgsp1_rep	three_prime_UTR	3856578	3858320	.	-	.	Parent=Os05t0165500-02
Chr05	irgsp1_rep	mRNA	3876042	3881782	.	+	.	ID=Os05t0165800-01;Name=Os05t0165800-01;Locus_id=Os05g0165800;Note=Hypothetical protein.;Transcript_evidence=AK065881 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013046P18;Expression=AK065881;TENOR=Os05t0165800-01;KEGG=Os05t0165800-01
Chr05	irgsp1_rep	five_prime_UTR	3876042	3876330	.	+	.	Parent=Os05t0165800-01
Chr05	irgsp1_rep	five_prime_UTR	3880288	3880724	.	+	.	Parent=Os05t0165800-01
Chr05	irgsp1_rep	CDS	3880725	3880946	.	+	0	Parent=Os05t0165800-01
Chr05	irgsp1_rep	three_prime_UTR	3880947	3881782	.	+	.	Parent=Os05t0165800-01
Chr05	irgsp1_rep	mRNA	3878200	3881024	.	-	.	ID=Os05t0165900-01;Name=Os05t0165900-01;Locus_id=Os05g0165900;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK103089 (DDBJ%2C Best hit);ORF_evidence=Q01N33 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),S-receptor-like serine/threonine-protein kinase (IPR024171);NIAS_FLcDNA=J033118J02;Expression=AK103089;TENOR=Os05t0165900-01;KEGG=Os05t0165900-01
Chr05	irgsp1_rep	five_prime_UTR	3880961	3881024	.	-	.	Parent=Os05t0165900-01
Chr05	irgsp1_rep	CDS	3878516	3880960	.	-	0	Parent=Os05t0165900-01
Chr05	irgsp1_rep	three_prime_UTR	3878200	3878515	.	-	.	Parent=Os05t0165900-01
Chr05	irgsp1_rep	mRNA	3956610	3959179	.	-	.	ID=Os05t0166300-01;Name=Os05t0166300-01;Locus_id=Os05g0166300;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK241221 (DDBJ%2C Best hit);ORF_evidence=Q01N33 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),S-receptor-like serine/threonine-protein kinase (IPR024171);NIAS_FLcDNA=J065123N18;TENOR=Os05t0166300-01;KEGG=Os05t0166300-01
Chr05	irgsp1_rep	five_prime_UTR	3959121	3959179	.	-	.	Parent=Os05t0166300-01
Chr05	irgsp1_rep	CDS	3956709	3959120	.	-	0	Parent=Os05t0166300-01
Chr05	irgsp1_rep	three_prime_UTR	3956610	3956708	.	-	.	Parent=Os05t0166300-01
Chr05	irgsp1_rep	mRNA	3967280	3967951	.	+	.	ID=Os05t0166450-01;Name=Os05t0166450-01;Locus_id=Os05g0166450;Note=Hypothetical gene.;Transcript_evidence=AK243314 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J100056F14;TENOR=Os05t0166450-01;KEGG=Os05t0166450-01
Chr05	irgsp1_rep	five_prime_UTR	3967280	3967281	.	+	.	Parent=Os05t0166450-01
Chr05	irgsp1_rep	CDS	3967282	3967854	.	+	0	Parent=Os05t0166450-01
Chr05	irgsp1_rep	three_prime_UTR	3967855	3967951	.	+	.	Parent=Os05t0166450-01
Chr05	irgsp1_rep	mRNA	3970962	3973397	.	+	.	ID=Os05t0166525-00;Name=Os05t0166525-00;Locus_id=Os05g0166525;Note=Hypothetical protein.;Transcript_evidence=tplb0036o12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0166525-00
Chr05	irgsp1_rep	five_prime_UTR	3970962	3972465	.	+	.	Parent=Os05t0166525-00
Chr05	irgsp1_rep	five_prime_UTR	3972637	3972956	.	+	.	Parent=Os05t0166525-00
Chr05	irgsp1_rep	CDS	3972957	3973367	.	+	0	Parent=Os05t0166525-00
Chr05	irgsp1_rep	three_prime_UTR	3973368	3973397	.	+	.	Parent=Os05t0166525-00
Chr05	irgsp1_rep	mRNA	3970970	3973384	.	-	.	ID=Os05t0166600-00;Name=Os05t0166600-00;Locus_id=Os05g0166600;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=E0CW78 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),S-receptor-like serine/threonine-protein kinase (IPR024171);TENOR=Os05t0166600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	3970970	3973384	.	-	0	Parent=Os05t0166600-00
Chr05	irgsp1_rep	mRNA	3981151	3981551	.	+	.	ID=Os05t0166833-00;Name=Os05t0166833-00;Locus_id=Os05g0166833;Note=Non-protein coding transcript.;Transcript_evidence=CT836367 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os05t0166833-00
Chr05	irgsp1_rep	exon	3981151	3981551	.	+	.	Parent=Os05t0166833-00
Chr05	irgsp1_rep	mRNA	3981395	3982992	.	-	.	ID=Os05t0166900-00;Name=Os05t0166900-00;Locus_id=Os05g0166900;CGSNL Gene Symbol=RLCK180;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 180;Oryzabase Gene Symbol Synonym(s)=OsRLCK180;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 180;Note=Similar to S-domain receptor-like protein kinase.;Transcript_evidence=AK358766 (DDBJ);ORF_evidence=E0CW78 (UniProt);GO=Biological Process: recognition of pollen (GO:0048544);InterPro=S-locus glycoprotein (IPR000858),Apple-like (IPR003609),PAN-2 domain (IPR013227);Oryzabase=18881;TENOR=Os05t0166900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	3982120	3982992	.	-	0	Parent=Os05t0166900-00
Chr05	irgsp1_rep	three_prime_UTR	3981395	3982119	.	-	.	Parent=Os05t0166900-00
Chr05	irgsp1_rep	mRNA	4043730	4048020	.	+	.	ID=Os05t0167300-01;Name=Os05t0167300-01;Locus_id=Os05g0167300;Note=Hypothetical conserved gene.;Transcript_evidence=AK288179 (DDBJ%2C Best hit);ORF_evidence=B9FHR1 (UniProt);NIAS_FLcDNA=J090005B04;TENOR=Os05t0167300-01;KEGG=Os05t0167300-01
Chr05	irgsp1_rep	five_prime_UTR	4043730	4046383	.	+	.	Parent=Os05t0167300-01
Chr05	irgsp1_rep	CDS	4046384	4046758	.	+	0	Parent=Os05t0167300-01
Chr05	irgsp1_rep	three_prime_UTR	4046759	4048020	.	+	.	Parent=Os05t0167300-01
Chr05	irgsp1_rep	mRNA	4076007	4078403	.	+	.	ID=Os05t0167600-01;Name=Os05t0167600-01;Locus_id=Os05g0167600;Note=Conserved hypothetical protein.;Transcript_evidence=AK060646 (DDBJ%2C Best hit);ORF_evidence=B9FMN6 (UniProt);NIAS_FLcDNA=001-027-G05;Expression=AK060646;TENOR=Os05t0167600-01;KEGG=Os05t0167600-01
Chr05	irgsp1_rep	five_prime_UTR	4076007	4076099	.	+	.	Parent=Os05t0167600-01
Chr05	irgsp1_rep	CDS	4076100	4076150	.	+	0	Parent=Os05t0167600-01
Chr05	irgsp1_rep	CDS	4077131	4077718	.	+	0	Parent=Os05t0167600-01
Chr05	irgsp1_rep	three_prime_UTR	4077719	4078403	.	+	.	Parent=Os05t0167600-01
Chr05	irgsp1_rep	mRNA	4093466	4094599	.	-	.	ID=Os05t0168200-01;Name=Os05t0168200-01;Locus_id=Os05g0168200;Note=Pentaxin domain containing protein.;Transcript_evidence=AK061420 (DDBJ%2C Best hit);ORF_evidence=Q10GP6 (UniProt);NIAS_FLcDNA=006-306-F04;Expression=AK061420;TENOR=Os05t0168200-01;KEGG=Os05t0168200-01
Chr05	irgsp1_rep	five_prime_UTR	4094455	4094599	.	-	.	Parent=Os05t0168200-01
Chr05	irgsp1_rep	CDS	4094383	4094454	.	-	0	Parent=Os05t0168200-01
Chr05	irgsp1_rep	CDS	4093564	4094262	.	-	0	Parent=Os05t0168200-01
Chr05	irgsp1_rep	three_prime_UTR	4093466	4093563	.	-	.	Parent=Os05t0168200-01
Chr05	irgsp1_rep	mRNA	4096771	4100732	.	-	.	ID=Os05t0168300-01;Name=Os05t0168300-01;Locus_id=Os05g0168300;Note=Haloacid dehalogenase-like hydrolase domain containing protein.;Transcript_evidence=AK066130 (DDBJ%2C Best hit);ORF_evidence=B6TIK5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Haloacid dehalogenase-like hydrolase (IPR005834),HAD-like domain (IPR023214);NIAS_FLcDNA=J013052M23;Expression=AK066130;TENOR=Os05t0168300-01;KEGG=Os05t0168300-01
Chr05	irgsp1_rep	five_prime_UTR	4100720	4100732	.	-	.	Parent=Os05t0168300-01
Chr05	irgsp1_rep	CDS	4100618	4100719	.	-	0	Parent=Os05t0168300-01
Chr05	irgsp1_rep	CDS	4100433	4100525	.	-	0	Parent=Os05t0168300-01
Chr05	irgsp1_rep	CDS	4099698	4099766	.	-	0	Parent=Os05t0168300-01
Chr05	irgsp1_rep	CDS	4099489	4099593	.	-	0	Parent=Os05t0168300-01
Chr05	irgsp1_rep	CDS	4098687	4098741	.	-	0	Parent=Os05t0168300-01
Chr05	irgsp1_rep	CDS	4098247	4098320	.	-	2	Parent=Os05t0168300-01
Chr05	irgsp1_rep	CDS	4097914	4097997	.	-	0	Parent=Os05t0168300-01
Chr05	irgsp1_rep	CDS	4097687	4097827	.	-	0	Parent=Os05t0168300-01
Chr05	irgsp1_rep	CDS	4097500	4097565	.	-	0	Parent=Os05t0168300-01
Chr05	irgsp1_rep	CDS	4097305	4097414	.	-	0	Parent=Os05t0168300-01
Chr05	irgsp1_rep	CDS	4096983	4097151	.	-	1	Parent=Os05t0168300-01
Chr05	irgsp1_rep	three_prime_UTR	4096771	4096982	.	-	.	Parent=Os05t0168300-01
Chr05	irgsp1_rep	mRNA	4102594	4105887	.	+	.	ID=Os05t0168400-01;Name=Os05t0168400-01;Locus_id=Os05g0168400;Note=Conserved hypothetical protein.;Transcript_evidence=AK069800 (DDBJ%2C Best hit),AK106195 (DDBJ%2C Best hit);ORF_evidence=B8AYG7 (UniProt);NIAS_FLcDNA=J023027O05,001-208-E08;Expression=AK069800;TENOR=Os05t0168400-01;KEGG=Os05t0168400-01
Chr05	irgsp1_rep	five_prime_UTR	4102594	4102661	.	+	.	Parent=Os05t0168400-01
Chr05	irgsp1_rep	CDS	4102662	4102805	.	+	0	Parent=Os05t0168400-01
Chr05	irgsp1_rep	CDS	4102914	4102976	.	+	0	Parent=Os05t0168400-01
Chr05	irgsp1_rep	CDS	4103083	4103138	.	+	0	Parent=Os05t0168400-01
Chr05	irgsp1_rep	CDS	4103576	4103669	.	+	1	Parent=Os05t0168400-01
Chr05	irgsp1_rep	CDS	4103754	4103814	.	+	0	Parent=Os05t0168400-01
Chr05	irgsp1_rep	CDS	4104561	4104642	.	+	2	Parent=Os05t0168400-01
Chr05	irgsp1_rep	CDS	4104751	4104806	.	+	1	Parent=Os05t0168400-01
Chr05	irgsp1_rep	CDS	4104994	4105057	.	+	2	Parent=Os05t0168400-01
Chr05	irgsp1_rep	CDS	4105377	4105440	.	+	1	Parent=Os05t0168400-01
Chr05	irgsp1_rep	three_prime_UTR	4105441	4105887	.	+	.	Parent=Os05t0168400-01
Chr05	irgsp1_rep	mRNA	4107130	4109864	.	-	.	ID=Os05t0168500-01;Name=Os05t0168500-01;Locus_id=Os05g0168500;Note=Nonaspanin (TM9SF) family protein.;Transcript_evidence=AK100711 (DDBJ%2C Best hit);ORF_evidence=NP_001151523.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Nonaspanin (TM9SF) (IPR004240);NIAS_FLcDNA=J023115H14;Expression=AK100711;TENOR=Os05t0168500-01;KEGG=Os05t0168500-01
Chr05	irgsp1_rep	five_prime_UTR	4109759	4109864	.	-	.	Parent=Os05t0168500-01
Chr05	irgsp1_rep	five_prime_UTR	4109421	4109428	.	-	.	Parent=Os05t0168500-01
Chr05	irgsp1_rep	CDS	4107450	4109420	.	-	0	Parent=Os05t0168500-01
Chr05	irgsp1_rep	three_prime_UTR	4107130	4107449	.	-	.	Parent=Os05t0168500-01
Chr05	irgsp1_rep	mRNA	4107120	4108208	.	-	.	ID=Os05t0168500-02;Name=Os05t0168500-02;Locus_id=Os05g0168500;Note=Similar to predicted protein.;Transcript_evidence=AK060842 (DDBJ%2C Best hit);ORF_evidence=NP_001151523.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Nonaspanin (TM9SF) (IPR004240);NIAS_FLcDNA=001-034-D06;Expression=AK060842;TENOR=Os05t0168500-02;KEGG=Os05t0168500-02
Chr05	irgsp1_rep	CDS	4107450	4108208	.	-	0	Parent=Os05t0168500-02
Chr05	irgsp1_rep	three_prime_UTR	4107120	4107449	.	-	.	Parent=Os05t0168500-02
Chr05	irgsp1_rep	mRNA	4117811	4121262	.	-	.	ID=Os05t0168700-01;Name=Os05t0168700-01;Locus_id=Os05g0168700;Oryzabase Gene Symbol Synonym(s)=Os GPT;Oryzabase Gene Name Synonym(s)=glucose-6-phosphate/phosphate-translocator;Note=Protein of unknown function DUF250 domain containing protein.;Transcript_evidence=AK065618 (DDBJ%2C Best hit);ORF_evidence=B4G114 (UniProt);InterPro=Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=J013028M22;Oryzabase=13664;Expression=AK065618;TENOR=Os05t0168700-01;KEGG=Os05t0168700-01
Chr05	irgsp1_rep	five_prime_UTR	4121144	4121262	.	-	.	Parent=Os05t0168700-01
Chr05	irgsp1_rep	five_prime_UTR	4120964	4121062	.	-	.	Parent=Os05t0168700-01
Chr05	irgsp1_rep	CDS	4120840	4120963	.	-	0	Parent=Os05t0168700-01
Chr05	irgsp1_rep	CDS	4119963	4120147	.	-	2	Parent=Os05t0168700-01
Chr05	irgsp1_rep	CDS	4119551	4119618	.	-	0	Parent=Os05t0168700-01
Chr05	irgsp1_rep	CDS	4119345	4119477	.	-	1	Parent=Os05t0168700-01
Chr05	irgsp1_rep	CDS	4118824	4118985	.	-	0	Parent=Os05t0168700-01
Chr05	irgsp1_rep	CDS	4118477	4118743	.	-	0	Parent=Os05t0168700-01
Chr05	irgsp1_rep	CDS	4118240	4118365	.	-	0	Parent=Os05t0168700-01
Chr05	irgsp1_rep	three_prime_UTR	4117811	4118239	.	-	.	Parent=Os05t0168700-01
Chr05	irgsp1_rep	mRNA	4129195	4134223	.	-	.	ID=Os05t0168800-01;Name=Os05t0168800-01;Locus_id=Os05g0168800;Note=KIP1-like domain containing protein.;Transcript_evidence=AK101183 (DDBJ%2C Best hit);ORF_evidence=NP_001146907.1 (RefSeq);InterPro=KIP1-like (IPR011684);NIAS_FLcDNA=J033029G04;Expression=AK101183;TENOR=Os05t0168800-01;KEGG=Os05t0168800-01
Chr05	irgsp1_rep	five_prime_UTR	4133993	4134223	.	-	.	Parent=Os05t0168800-01
Chr05	irgsp1_rep	five_prime_UTR	4131615	4131659	.	-	.	Parent=Os05t0168800-01
Chr05	irgsp1_rep	CDS	4131512	4131614	.	-	0	Parent=Os05t0168800-01
Chr05	irgsp1_rep	CDS	4129563	4131334	.	-	2	Parent=Os05t0168800-01
Chr05	irgsp1_rep	three_prime_UTR	4129195	4129562	.	-	.	Parent=Os05t0168800-01
Chr05	irgsp1_rep	mRNA	4129345	4134180	.	-	.	ID=Os05t0168800-02;Name=Os05t0168800-02;Locus_id=Os05g0168800;Note=KIP1-like domain containing protein.;Transcript_evidence=AK101173 (DDBJ%2C Best hit);ORF_evidence=NP_001146907.1 (RefSeq);InterPro=KIP1-like (IPR011684);NIAS_FLcDNA=J033028P08;Expression=AK101173;TENOR=Os05t0168800-02;KEGG=Os05t0168800-02
Chr05	irgsp1_rep	five_prime_UTR	4133993	4134180	.	-	.	Parent=Os05t0168800-02
Chr05	irgsp1_rep	five_prime_UTR	4131615	4131659	.	-	.	Parent=Os05t0168800-02
Chr05	irgsp1_rep	CDS	4131512	4131614	.	-	0	Parent=Os05t0168800-02
Chr05	irgsp1_rep	CDS	4129563	4131334	.	-	2	Parent=Os05t0168800-02
Chr05	irgsp1_rep	three_prime_UTR	4129345	4129562	.	-	.	Parent=Os05t0168800-02
Chr05	irgsp1_rep	mRNA	4129253	4130927	.	-	.	ID=Os05t0168800-03;Name=Os05t0168800-03;Locus_id=Os05g0168800;Note=Similar to CENP-E like kinetochore protein.;Transcript_evidence=AK062017 (DDBJ%2C Best hit);ORF_evidence=A2Y0T2 (UniProt);NIAS_FLcDNA=001-043-F07;Expression=AK062017;TENOR=Os05t0168800-03;KEGG=Os05t0168800-03
Chr05	irgsp1_rep	CDS	4129563	4130927	.	-	0	Parent=Os05t0168800-03
Chr05	irgsp1_rep	three_prime_UTR	4129253	4129562	.	-	.	Parent=Os05t0168800-03
Chr05	irgsp1_rep	mRNA	4136117	4139260	.	-	.	ID=Os05t0169000-01;Name=Os05t0169000-01;Locus_id=Os05g0169000;CGSNL Gene Symbol=TRXH8;CGSNL Gene Name=THIOREDOXIN H-TYPE 8;Oryzabase Gene Symbol Synonym(s)=OsTRXh8%2C OsTrx18%2C Os5%2C OsTrxh5;Oryzabase Gene Name Synonym(s)=Thioredoxin H-type 8%2C H-type Thioredoxin 8%2C Thioredoxin 18%2C thioredoxin h5;Note=Similar to Thioredoxin-like protein.;Transcript_evidence=AK060918 (DDBJ%2C Best hit);ORF_evidence=A2Y0T3 (UniProt);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Thioredoxin (IPR005746),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766),Thioredoxin%2C conserved site (IPR017937);NIAS_FLcDNA=001-035-G10;Oryzabase=9911;Expression=AK060918;TENOR=Os05t0169000-01;KEGG=Os05t0169000-01
Chr05	irgsp1_rep	five_prime_UTR	4138999	4139260	.	-	.	Parent=Os05t0169000-01
Chr05	irgsp1_rep	five_prime_UTR	4138321	4138368	.	-	.	Parent=Os05t0169000-01
Chr05	irgsp1_rep	CDS	4138300	4138320	.	-	0	Parent=Os05t0169000-01
Chr05	irgsp1_rep	CDS	4138076	4138192	.	-	0	Parent=Os05t0169000-01
Chr05	irgsp1_rep	CDS	4137162	4137284	.	-	0	Parent=Os05t0169000-01
Chr05	irgsp1_rep	CDS	4136422	4136559	.	-	0	Parent=Os05t0169000-01
Chr05	irgsp1_rep	three_prime_UTR	4136117	4136421	.	-	.	Parent=Os05t0169000-01
Chr05	irgsp1_rep	mRNA	4136117	4139179	.	-	.	ID=Os05t0169000-02;Name=Os05t0169000-02;Locus_id=Os05g0169000;CGSNL Gene Symbol=TRXH8;CGSNL Gene Name=THIOREDOXIN H-TYPE 8;Oryzabase Gene Symbol Synonym(s)=OsTRXh8%2C OsTrx18%2C Os5%2C OsTrxh5;Oryzabase Gene Name Synonym(s)=Thioredoxin H-type 8%2C H-type Thioredoxin 8%2C Thioredoxin 18%2C thioredoxin h5;Note=Similar to Thioredoxin h-like protein.;Transcript_evidence=AK067480 (DDBJ%2C Best hit);ORF_evidence=A2Y0T3 (UniProt);NIAS_FLcDNA=J013106B08;Oryzabase=9911;Expression=AK067480;TENOR=Os05t0169000-02;KEGG=Os05t0169000-02
Chr05	irgsp1_rep	five_prime_UTR	4138223	4139179	.	-	.	Parent=Os05t0169000-02
Chr05	irgsp1_rep	CDS	4137890	4138222	.	-	0	Parent=Os05t0169000-02
Chr05	irgsp1_rep	three_prime_UTR	4136117	4137889	.	-	.	Parent=Os05t0169000-02
Chr05	irgsp1_rep	mRNA	4142124	4144008	.	+	.	ID=Os05t0169100-01;Name=Os05t0169100-01;Locus_id=Os05g0169100;Note=Similar to 60S ribosomal protein L10 (QM protein homolog).;Transcript_evidence=AK066128 (DDBJ%2C Best hit),AK120033 (DDBJ%2C Best hit);ORF_evidence=Q0DKF0 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L10e (IPR001197),Ribosomal protein L10e/L16 (IPR016180),Ribosomal protein L10e%2C conserved site (IPR018255);NIAS_FLcDNA=J013052E20,002-188-A02;Oryzabase=17633;TENOR=Os05t0169100-01
Chr05	irgsp1_rep	five_prime_UTR	4142124	4142185	.	+	.	Parent=Os05t0169100-01
Chr05	irgsp1_rep	CDS	4142186	4142195	.	+	0	Parent=Os05t0169100-01
Chr05	irgsp1_rep	CDS	4142892	4143393	.	+	2	Parent=Os05t0169100-01
Chr05	irgsp1_rep	CDS	4143498	4143579	.	+	1	Parent=Os05t0169100-01
Chr05	irgsp1_rep	CDS	4143756	4143821	.	+	0	Parent=Os05t0169100-01
Chr05	irgsp1_rep	three_prime_UTR	4143822	4144008	.	+	.	Parent=Os05t0169100-01
Chr05	irgsp1_rep	mRNA	4143174	4144008	.	+	.	ID=Os05t0169100-02;Name=Os05t0169100-02;Locus_id=Os05g0169100;Note=Similar to 60S ribosomal protein L10-2.;Transcript_evidence=AK062208 (DDBJ%2C Best hit);ORF_evidence=Q0DKF0 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L10e/L16 (IPR016180),Ribosomal protein L10e%2C conserved site (IPR018255);NIAS_FLcDNA=001-046-H08;Oryzabase=17633;Expression=AK062208;TENOR=Os05t0169100-02;KEGG=Os05t0169100-02
Chr05	irgsp1_rep	five_prime_UTR	4143174	4143175	.	+	.	Parent=Os05t0169100-02
Chr05	irgsp1_rep	CDS	4143176	4143393	.	+	0	Parent=Os05t0169100-02
Chr05	irgsp1_rep	CDS	4143498	4143579	.	+	1	Parent=Os05t0169100-02
Chr05	irgsp1_rep	CDS	4143756	4143821	.	+	0	Parent=Os05t0169100-02
Chr05	irgsp1_rep	three_prime_UTR	4143822	4144008	.	+	.	Parent=Os05t0169100-02
Chr05	irgsp1_rep	mRNA	4144983	4148965	.	+	.	ID=Os05t0169200-01;Name=Os05t0169200-01;Locus_id=Os05g0169200;CGSNL Gene Symbol=ATG18D;CGSNL Gene Name=AUTOPHAGY ASSOCIATED GENE 18D;Oryzabase Gene Symbol Synonym(s)=OsATG18d%2C OsWD40-114;Oryzabase Gene Name Synonym(s)=autophagy 18d;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK069215 (DDBJ%2C Best hit);ORF_evidence=NP_191203.2 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40 repeat%2C subgroup (IPR019781);NIAS_FLcDNA=J023010M03;Oryzabase=9663;Expression=AK069215;TENOR=Os05t0169200-01;KEGG=Os05t0169200-01
Chr05	irgsp1_rep	five_prime_UTR	4144983	4145159	.	+	.	Parent=Os05t0169200-01
Chr05	irgsp1_rep	five_prime_UTR	4145555	4145739	.	+	.	Parent=Os05t0169200-01
Chr05	irgsp1_rep	CDS	4145740	4146414	.	+	0	Parent=Os05t0169200-01
Chr05	irgsp1_rep	CDS	4146612	4146870	.	+	0	Parent=Os05t0169200-01
Chr05	irgsp1_rep	CDS	4147492	4147615	.	+	2	Parent=Os05t0169200-01
Chr05	irgsp1_rep	CDS	4148531	4148621	.	+	1	Parent=Os05t0169200-01
Chr05	irgsp1_rep	three_prime_UTR	4148622	4148965	.	+	.	Parent=Os05t0169200-01
Chr05	irgsp1_rep	mRNA	4152905	4155858	.	+	.	ID=Os05t0169300-01;Name=Os05t0169300-01;Locus_id=Os05g0169300;RAP-DB Gene Symbol Synonym(s)=TAR1%2C OsTAR1%2C FBL;RAP-DB Gene Name Synonym(s)=TRYPTOPHAN AMINOTRANSFERASE 1%2C Trp aminotransferase 1%2C FIBLIKE%2C FIB LIKE;CGSNL Gene Symbol=TAR1;CGSNL Gene Name=TRYPTOPHAN AMINOTRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=OsTAR1%2C FBL;Oryzabase Gene Name Synonym(s)=Trp aminotransferase 1%2C FIBLIKE%2C FIB LIKE%2C TRYPTOPHAN AMINOTRANSFERASE RELATED 1;Note=Tryptophan aminotransferase%2C Indole-3-acetic acid (IAA) biosynthesis%2C Grain development;Transcript_evidence=AK071687;ORF_evidence=Q0DKE8;GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: carbon-sulfur lyase activity (GO:0016846),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent transferase (IPR015424),EGF-like%2C alliinase (IPR006947),Allinase%2C C-terminal (IPR006948),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422);NIAS_FLcDNA=J023113A03;Manual Curation=January 21%2C 2015;Literature_PMID=22582989,24654985;Oryzabase=11501;TENOR=Os05t0169300-01;KEGG=Os05t0169300-01
Chr05	irgsp1_rep	five_prime_UTR	4152905	4152963	.	+	.	Parent=Os05t0169300-01
Chr05	irgsp1_rep	CDS	4152964	4153202	.	+	0	Parent=Os05t0169300-01
Chr05	irgsp1_rep	CDS	4153393	4153699	.	+	1	Parent=Os05t0169300-01
Chr05	irgsp1_rep	CDS	4154603	4154880	.	+	0	Parent=Os05t0169300-01
Chr05	irgsp1_rep	CDS	4154966	4155282	.	+	1	Parent=Os05t0169300-01
Chr05	irgsp1_rep	CDS	4155379	4155563	.	+	2	Parent=Os05t0169300-01
Chr05	irgsp1_rep	three_prime_UTR	4155564	4155858	.	+	.	Parent=Os05t0169300-01
Chr05	irgsp1_rep	mRNA	4153655	4155880	.	+	.	ID=Os05t0169300-02;Name=Os05t0169300-02;Locus_id=Os05g0169300;CGSNL Gene Symbol=TAR1;CGSNL Gene Name=TRYPTOPHAN AMINOTRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=OsTAR1%2C FBL;Oryzabase Gene Name Synonym(s)=Trp aminotransferase 1%2C FIBLIKE%2C FIB LIKE%2C TRYPTOPHAN AMINOTRANSFERASE RELATED 1;Note=Similar to Tryptophan aminotransferase.;Transcript_evidence=AK071481 (DDBJ%2C Best hit);ORF_evidence=B5ATU2 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: carbon-sulfur lyase activity (GO:0016846),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Allinase%2C C-terminal (IPR006948),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J023091A07;Oryzabase=11501;TENOR=Os05t0169300-02;KEGG=Os05t0169300-02
Chr05	irgsp1_rep	CDS	4153655	4153699	.	+	0	Parent=Os05t0169300-02
Chr05	irgsp1_rep	CDS	4154603	4154880	.	+	0	Parent=Os05t0169300-02
Chr05	irgsp1_rep	CDS	4154966	4155282	.	+	1	Parent=Os05t0169300-02
Chr05	irgsp1_rep	CDS	4155379	4155563	.	+	2	Parent=Os05t0169300-02
Chr05	irgsp1_rep	three_prime_UTR	4155564	4155880	.	+	.	Parent=Os05t0169300-02
Chr05	irgsp1_rep	mRNA	4161061	4164865	.	-	.	ID=Os05t0169400-01;Name=Os05t0169400-01;Locus_id=Os05g0169400;Note=Protein of unknown function DUF1421 family protein.;Transcript_evidence=AK073439 (DDBJ%2C Best hit);ORF_evidence=B6SV28 (UniProt);InterPro=Protein of unknown function DUF1421 (IPR010820);NIAS_FLcDNA=J033044H02;Expression=AK073439;TENOR=Os05t0169400-01;KEGG=Os05t0169400-01
Chr05	irgsp1_rep	five_prime_UTR	4164865	4164865	.	-	.	Parent=Os05t0169400-01
Chr05	irgsp1_rep	CDS	4164807	4164864	.	-	0	Parent=Os05t0169400-01
Chr05	irgsp1_rep	CDS	4164452	4164609	.	-	2	Parent=Os05t0169400-01
Chr05	irgsp1_rep	CDS	4163162	4163440	.	-	0	Parent=Os05t0169400-01
Chr05	irgsp1_rep	CDS	4161436	4162551	.	-	0	Parent=Os05t0169400-01
Chr05	irgsp1_rep	three_prime_UTR	4161061	4161435	.	-	.	Parent=Os05t0169400-01
Chr05	irgsp1_rep	mRNA	4164562	4164832	.	+	.	ID=Os05t0169450-00;Name=Os05t0169450-00;Locus_id=Os05g0169450;Note=Hypothetical protein.;Transcript_evidence=EU966513 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0169450-00
Chr05	irgsp1_rep	five_prime_UTR	4164562	4164562	.	+	.	Parent=Os05t0169450-00
Chr05	irgsp1_rep	CDS	4164563	4164832	.	+	0	Parent=Os05t0169450-00
Chr05	irgsp1_rep	mRNA	4165126	4171199	.	+	.	ID=Os05t0169500-01;Name=Os05t0169500-01;Locus_id=Os05g0169500;Note=Hypothetical protein.;Transcript_evidence=AK120872 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023026M09;Expression=AK120872;TENOR=Os05t0169500-01;KEGG=Os05t0169500-01
Chr05	irgsp1_rep	five_prime_UTR	4165126	4165247	.	+	.	Parent=Os05t0169500-01
Chr05	irgsp1_rep	five_prime_UTR	4165649	4166732	.	+	.	Parent=Os05t0169500-01
Chr05	irgsp1_rep	CDS	4166733	4166987	.	+	0	Parent=Os05t0169500-01
Chr05	irgsp1_rep	three_prime_UTR	4166988	4171199	.	+	.	Parent=Os05t0169500-01
Chr05	irgsp1_rep	mRNA	4175620	4176804	.	+	.	ID=Os05t0169600-01;Name=Os05t0169600-01;Locus_id=Os05g0169600;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK242507 (DDBJ%2C Best hit);ORF_evidence=C6ZRZ1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J080310L02;TENOR=Os05t0169600-01;KEGG=Os05t0169600-01
Chr05	irgsp1_rep	CDS	4175620	4175785	.	+	0	Parent=Os05t0169600-01
Chr05	irgsp1_rep	CDS	4175916	4176427	.	+	2	Parent=Os05t0169600-01
Chr05	irgsp1_rep	three_prime_UTR	4176428	4176804	.	+	.	Parent=Os05t0169600-01
Chr05	irgsp1_rep	mRNA	4174852	4179267	.	-	.	ID=Os05t0169700-00;Name=Os05t0169700-00;Locus_id=Os05g0169700;Note=Similar to Sugar transporter family protein%2C expressed.;Transcript_evidence=BT041125 (DDBJ);ORF_evidence=Q2R1T1 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transmembrane transporter activity (GO:0022857);InterPro=General substrate transporter (IPR005828),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);TENOR=Os05t0169700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	4178809	4179267	.	-	0	Parent=Os05t0169700-00
Chr05	irgsp1_rep	CDS	4178348	4178701	.	-	0	Parent=Os05t0169700-00
Chr05	irgsp1_rep	CDS	4174852	4175430	.	-	0	Parent=Os05t0169700-00
Chr05	irgsp1_rep	mRNA	4175911	4176376	.	-	.	ID=Os05t0169701-00;Name=Os05t0169701-00;Locus_id=Os05g0169701;Note=Hypothetical protein.;Transcript_evidence=EU948106 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0169701-00
Chr05	irgsp1_rep	five_prime_UTR	4176340	4176376	.	-	.	Parent=Os05t0169701-00
Chr05	irgsp1_rep	CDS	4175911	4176339	.	-	0	Parent=Os05t0169701-00
Chr05	irgsp1_rep	mRNA	4180163	4185468	.	-	.	ID=Os05t0169800-00;Name=Os05t0169800-00;Locus_id=Os05g0169800;Note=Similar to Carboxyl-terminal proteinase.;Transcript_evidence=AK376492 (DDBJ);ORF_evidence=B6SXW9 (UniProt);InterPro=Glucoamylase%2C putatuve (IPR004314);TENOR=Os05t0169800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	4185229	4185468	.	-	0	Parent=Os05t0169800-00
Chr05	irgsp1_rep	CDS	4184995	4185135	.	-	0	Parent=Os05t0169800-00
Chr05	irgsp1_rep	CDS	4184573	4184755	.	-	0	Parent=Os05t0169800-00
Chr05	irgsp1_rep	CDS	4182260	4182424	.	-	0	Parent=Os05t0169800-00
Chr05	irgsp1_rep	CDS	4181875	4181928	.	-	0	Parent=Os05t0169800-00
Chr05	irgsp1_rep	CDS	4181617	4181763	.	-	0	Parent=Os05t0169800-00
Chr05	irgsp1_rep	CDS	4180163	4180540	.	-	0	Parent=Os05t0169800-00
Chr05	irgsp1_rep	mRNA	4179894	4185469	.	+	.	ID=Os05t0169900-01;Name=Os05t0169900-01;Locus_id=Os05g0169900;Note=Hypothetical gene.;Transcript_evidence=AK287916 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065213O19;TENOR=Os05t0169900-01
Chr05	irgsp1_rep	five_prime_UTR	4179894	4180540	.	+	.	Parent=Os05t0169900-01
Chr05	irgsp1_rep	five_prime_UTR	4181617	4181763	.	+	.	Parent=Os05t0169900-01
Chr05	irgsp1_rep	five_prime_UTR	4181875	4181928	.	+	.	Parent=Os05t0169900-01
Chr05	irgsp1_rep	five_prime_UTR	4182260	4182421	.	+	.	Parent=Os05t0169900-01
Chr05	irgsp1_rep	CDS	4182422	4182424	.	+	0	Parent=Os05t0169900-01
Chr05	irgsp1_rep	CDS	4184573	4184884	.	+	0	Parent=Os05t0169900-01
Chr05	irgsp1_rep	CDS	4185049	4185135	.	+	0	Parent=Os05t0169900-01
Chr05	irgsp1_rep	CDS	4185229	4185469	.	+	0	Parent=Os05t0169900-01
Chr05	irgsp1_rep	mRNA	4195608	4200450	.	-	.	ID=Os05t0170000-01;Name=Os05t0170000-01;Locus_id=Os05g0170000;RAP-DB Gene Symbol Synonym(s)=BC10%2C FC116%2C FC116/BC10;RAP-DB Gene Name Synonym(s)=brittle culm 10%2C fragile culm 116;CGSNL Gene Symbol=BC10;CGSNL Gene Name=BRITTLE CULM 10;Oryzabase Gene Symbol Synonym(s)=BC10%2C bc10%2C FC116%2C FC116/BC10%2C Osbc10%2C Osfc116;Oryzabase Gene Name Synonym(s)=brittle culm 10%2C fragile culm 116;Note=Glycosyltransferase%2C Golgi-localized DUF266-containing protein%2C Putative beta-1%2C6-N-acetylglucosaminyltransferase%2C Cell-wall biosynthesis%2C Regulation of the cell wall polymers;Transcript_evidence=AK103412;ORF_evidence=Q65XS5;GO=Molecular Function: acetylglucosaminyltransferase activity (GO:0008375),Cellular Component: membrane (GO:0016020);InterPro=Glycosyl transferase%2C family 14 (IPR003406);NIAS_FLcDNA=J033128G01;Manual Curation=August 4%2C 2020;Literature_PMID=27708650,18939965;Oryzabase=8281;Expression=AK103412;TENOR=Os05t0170000-01;KEGG=Os05t0170000-01;Subcellular location=Golgi apparatus (GO:0005794)
Chr05	irgsp1_rep	five_prime_UTR	4200307	4200450	.	-	.	Parent=Os05t0170000-01
Chr05	irgsp1_rep	CDS	4199986	4200306	.	-	0	Parent=Os05t0170000-01
Chr05	irgsp1_rep	CDS	4199747	4199863	.	-	0	Parent=Os05t0170000-01
Chr05	irgsp1_rep	CDS	4199530	4199630	.	-	0	Parent=Os05t0170000-01
Chr05	irgsp1_rep	CDS	4198628	4198699	.	-	1	Parent=Os05t0170000-01
Chr05	irgsp1_rep	CDS	4198259	4198340	.	-	1	Parent=Os05t0170000-01
Chr05	irgsp1_rep	CDS	4198079	4198159	.	-	0	Parent=Os05t0170000-01
Chr05	irgsp1_rep	CDS	4197181	4197225	.	-	0	Parent=Os05t0170000-01
Chr05	irgsp1_rep	CDS	4196839	4196904	.	-	0	Parent=Os05t0170000-01
Chr05	irgsp1_rep	CDS	4196602	4196751	.	-	0	Parent=Os05t0170000-01
Chr05	irgsp1_rep	CDS	4196100	4196228	.	-	0	Parent=Os05t0170000-01
Chr05	irgsp1_rep	CDS	4195928	4195963	.	-	0	Parent=Os05t0170000-01
Chr05	irgsp1_rep	three_prime_UTR	4195608	4195927	.	-	.	Parent=Os05t0170000-01
Chr05	irgsp1_rep	mRNA	4195278	4200361	.	-	.	ID=Os05t0170000-02;Name=Os05t0170000-02;Locus_id=Os05g0170000;CGSNL Gene Symbol=BC10;CGSNL Gene Name=BRITTLE CULM 10;Oryzabase Gene Symbol Synonym(s)=BC10%2C bc10%2C FC116%2C FC116/BC10%2C Osbc10%2C Osfc116;Oryzabase Gene Name Synonym(s)=brittle culm 10%2C fragile culm 116;Note=Protein of unknown function DUF266%2C plant family protein.;Transcript_evidence=AK100216 (DDBJ%2C Best hit);ORF_evidence=B8AYP5 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: acetylglucosaminyltransferase activity (GO:0008375);InterPro=Glycosyl transferase%2C family 14 (IPR003406);NIAS_FLcDNA=J023045H21;Oryzabase=8281;Expression=AK100216;TENOR=Os05t0170000-02;KEGG=Os05t0170000-02
Chr05	irgsp1_rep	five_prime_UTR	4200307	4200361	.	-	.	Parent=Os05t0170000-02
Chr05	irgsp1_rep	CDS	4199986	4200306	.	-	0	Parent=Os05t0170000-02
Chr05	irgsp1_rep	CDS	4199747	4199863	.	-	0	Parent=Os05t0170000-02
Chr05	irgsp1_rep	CDS	4199530	4199630	.	-	0	Parent=Os05t0170000-02
Chr05	irgsp1_rep	CDS	4198628	4198699	.	-	1	Parent=Os05t0170000-02
Chr05	irgsp1_rep	CDS	4198259	4198340	.	-	1	Parent=Os05t0170000-02
Chr05	irgsp1_rep	CDS	4198079	4198159	.	-	0	Parent=Os05t0170000-02
Chr05	irgsp1_rep	CDS	4197181	4197225	.	-	0	Parent=Os05t0170000-02
Chr05	irgsp1_rep	CDS	4196839	4196904	.	-	0	Parent=Os05t0170000-02
Chr05	irgsp1_rep	CDS	4196602	4196751	.	-	0	Parent=Os05t0170000-02
Chr05	irgsp1_rep	CDS	4196100	4196228	.	-	0	Parent=Os05t0170000-02
Chr05	irgsp1_rep	CDS	4195928	4195963	.	-	0	Parent=Os05t0170000-02
Chr05	irgsp1_rep	three_prime_UTR	4195278	4195927	.	-	.	Parent=Os05t0170000-02
Chr05	irgsp1_rep	mRNA	4205610	4207693	.	+	.	ID=Os05t0170200-01;Name=Os05t0170200-01;Locus_id=Os05g0170200;Note=Similar to Universal stress protein.;Transcript_evidence=AK063609 (DDBJ%2C Best hit);ORF_evidence=D6BRD7 (UniProt);GO=Biological Process: response to stress (GO:0006950);InterPro=UspA (IPR006016),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=001-118-D02;Oryzabase=22705;TENOR=Os05t0170200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	4205610	4205663	.	+	.	Parent=Os05t0170200-01
Chr05	irgsp1_rep	CDS	4205664	4205907	.	+	0	Parent=Os05t0170200-01
Chr05	irgsp1_rep	CDS	4206456	4206507	.	+	2	Parent=Os05t0170200-01
Chr05	irgsp1_rep	CDS	4207540	4207633	.	+	1	Parent=Os05t0170200-01
Chr05	irgsp1_rep	three_prime_UTR	4207634	4207693	.	+	.	Parent=Os05t0170200-01
Chr05	irgsp1_rep	mRNA	4205610	4207693	.	+	.	ID=Os05t0170200-02;Name=Os05t0170200-02;Locus_id=Os05g0170200;Note=Similar to universal stress protein family protein.;Transcript_evidence=AK063611 (DDBJ%2C Best hit);ORF_evidence=XP_002885183.1 (RefSeq);GO=Biological Process: response to stress (GO:0006950);InterPro=Universal stress protein A (IPR006015),UspA (IPR006016),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=001-118-D04;Oryzabase=22705;TENOR=Os05t0170200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	4205610	4205663	.	+	.	Parent=Os05t0170200-02
Chr05	irgsp1_rep	CDS	4205664	4205907	.	+	0	Parent=Os05t0170200-02
Chr05	irgsp1_rep	CDS	4206456	4206565	.	+	2	Parent=Os05t0170200-02
Chr05	irgsp1_rep	CDS	4206687	4206803	.	+	0	Parent=Os05t0170200-02
Chr05	irgsp1_rep	CDS	4207446	4207586	.	+	0	Parent=Os05t0170200-02
Chr05	irgsp1_rep	three_prime_UTR	4207587	4207693	.	+	.	Parent=Os05t0170200-02
Chr05	irgsp1_rep	mRNA	4213222	4216654	.	-	.	ID=Os05t0170250-01;Name=Os05t0170250-01;Locus_id=Os05g0170250;Note=Hypothetical gene.;Transcript_evidence=AK243238 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100045K06;TENOR=Os05t0170250-01;KEGG=Os05t0170250-01
Chr05	irgsp1_rep	five_prime_UTR	4216571	4216654	.	-	.	Parent=Os05t0170250-01
Chr05	irgsp1_rep	CDS	4214909	4216570	.	-	0	Parent=Os05t0170250-01
Chr05	irgsp1_rep	three_prime_UTR	4213222	4214908	.	-	.	Parent=Os05t0170250-01
Chr05	irgsp1_rep	mRNA	4212926	4216532	.	+	.	ID=Os05t0170300-00;Name=Os05t0170300-00;Locus_id=Os05g0170300;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q65XS3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);TENOR=Os05t0170300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	4212926	4212934	.	+	0	Parent=Os05t0170300-00
Chr05	irgsp1_rep	CDS	4213392	4213490	.	+	0	Parent=Os05t0170300-00
Chr05	irgsp1_rep	CDS	4213518	4216532	.	+	0	Parent=Os05t0170300-00
Chr05	irgsp1_rep	mRNA	4224586	4226767	.	-	.	ID=Os05t0170600-01;Name=Os05t0170600-01;Locus_id=Os05g0170600;Oryzabase Gene Symbol Synonym(s)=OsCLE503%2C CLE503;Oryzabase Gene Name Synonym(s)=CLV3/ESR-related 503%2C CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 503;Note=Similar to CLE family OsCLE503 protein.;Transcript_evidence=AK103197 (DDBJ%2C Best hit);ORF_evidence=A8R3P7 (UniProt);NIAS_FLcDNA=J033122A02;Oryzabase=14240;Expression=AK103197;TENOR=Os05t0170600-01;KEGG=Os05t0170600-01
Chr05	irgsp1_rep	five_prime_UTR	4226589	4226767	.	-	.	Parent=Os05t0170600-01
Chr05	irgsp1_rep	CDS	4226248	4226588	.	-	0	Parent=Os05t0170600-01
Chr05	irgsp1_rep	CDS	4225114	4225120	.	-	1	Parent=Os05t0170600-01
Chr05	irgsp1_rep	three_prime_UTR	4224586	4225113	.	-	.	Parent=Os05t0170600-01
Chr05	irgsp1_rep	mRNA	4236343	4240173	.	-	.	ID=Os05t0170700-01;Name=Os05t0170700-01;Locus_id=Os05g0170700;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=AK242067 (DDBJ%2C Best hit);ORF_evidence=B9FMP9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J075130N13;TENOR=Os05t0170700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	4239981	4240173	.	-	.	Parent=Os05t0170700-01
Chr05	irgsp1_rep	CDS	4239827	4239980	.	-	0	Parent=Os05t0170700-01
Chr05	irgsp1_rep	CDS	4239402	4239567	.	-	2	Parent=Os05t0170700-01
Chr05	irgsp1_rep	CDS	4239199	4239270	.	-	1	Parent=Os05t0170700-01
Chr05	irgsp1_rep	CDS	4237817	4237960	.	-	1	Parent=Os05t0170700-01
Chr05	irgsp1_rep	CDS	4237261	4237332	.	-	1	Parent=Os05t0170700-01
Chr05	irgsp1_rep	CDS	4237105	4237168	.	-	1	Parent=Os05t0170700-01
Chr05	irgsp1_rep	three_prime_UTR	4236343	4237104	.	-	.	Parent=Os05t0170700-01
Chr05	irgsp1_rep	mRNA	4243556	4246732	.	-	.	ID=Os05t0170800-01;Name=Os05t0170800-01;Locus_id=Os05g0170800;Oryzabase Gene Symbol Synonym(s)=SIP10;Oryzabase Gene Name Synonym(s)=SKIP interacting protein 10%2C SKIPa-interacting protein 10%2C SKIPa-interacting protein 10;Note=ApaG domain containing protein.;Transcript_evidence=AK068085 (DDBJ%2C Best hit);ORF_evidence=B8Q896 (UniProt);GO=Biological Process: nucleotide-excision repair (GO:0006289),Molecular Function: DNA binding (GO:0003677),Molecular Function: nuclease activity (GO:0004518);InterPro=UvrB/UvrC protein (IPR001943),ApaG domain (IPR007474);NIAS_FLcDNA=J013131P13;Oryzabase=9942;Expression=AK068085;TENOR=Os05t0170800-01;KEGG=Os05t0170800-01
Chr05	irgsp1_rep	five_prime_UTR	4246555	4246732	.	-	.	Parent=Os05t0170800-01
Chr05	irgsp1_rep	CDS	4246234	4246554	.	-	0	Parent=Os05t0170800-01
Chr05	irgsp1_rep	CDS	4246016	4246129	.	-	0	Parent=Os05t0170800-01
Chr05	irgsp1_rep	CDS	4245282	4245362	.	-	0	Parent=Os05t0170800-01
Chr05	irgsp1_rep	CDS	4244594	4244766	.	-	0	Parent=Os05t0170800-01
Chr05	irgsp1_rep	CDS	4244417	4244513	.	-	1	Parent=Os05t0170800-01
Chr05	irgsp1_rep	CDS	4243989	4244105	.	-	0	Parent=Os05t0170800-01
Chr05	irgsp1_rep	three_prime_UTR	4243556	4243988	.	-	.	Parent=Os05t0170800-01
Chr05	irgsp1_rep	mRNA	4254052	4254939	.	+	.	ID=Os05t0170950-00;Name=Os05t0170950-00;Locus_id=Os05g0170950;CGSNL Gene Symbol=PPT4;CGSNL Gene Name=PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR 4;Oryzabase Gene Symbol Synonym(s)=OsPPT4;Note=Similar to Plastid phosphoenolpyruvate/phosphate translocator.;Transcript_evidence=CT836467 (DDBJ%2C Best hit);ORF_evidence=Q5VQL3 (UniProt);InterPro=Domain of unknown function DUF250 (IPR004853);Oryzabase=8718;TENOR=Os05t0170950-00;KEGG=Os05t0170950-00
Chr05	irgsp1_rep	five_prime_UTR	4254052	4254122	.	+	.	Parent=Os05t0170950-00
Chr05	irgsp1_rep	CDS	4254123	4254191	.	+	0	Parent=Os05t0170950-00
Chr05	irgsp1_rep	CDS	4254408	4254537	.	+	0	Parent=Os05t0170950-00
Chr05	irgsp1_rep	CDS	4254624	4254700	.	+	2	Parent=Os05t0170950-00
Chr05	irgsp1_rep	three_prime_UTR	4254701	4254939	.	+	.	Parent=Os05t0170950-00
Chr05	irgsp1_rep	mRNA	4255849	4260122	.	-	.	ID=Os05t0171000-01;Name=Os05t0171000-01;Locus_id=Os05g0171000;CGSNL Gene Symbol=PLDalpha2;CGSNL Gene Name=PHOSPHOLIPASE D alpha 2;Oryzabase Gene Symbol Synonym(s)=OsPLDalpha2;Oryzabase Gene Name Synonym(s)=phospholipase Dalpha2;Note=Phospholipase D2 (EC 3.1.4.4).;Transcript_evidence=AK240654 (DDBJ%2C Best hit);ORF_evidence=A2Y0V0 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: phosphatidylcholine metabolic process (GO:0046470),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phospholipase D activity (GO:0004630),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),Phospholipase D/Transphosphatidylase (IPR001736),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),Phospholipase D%2C plant (IPR011402),Phospholipase D (IPR015679),Phospholipase D%2C C-terminal (IPR024632);NIAS_FLcDNA=J023098I11;Oryzabase=8688;TENOR=Os05t0171000-01;KEGG=Os05t0171000-01 (EC:3.1.4.4)
Chr05	irgsp1_rep	five_prime_UTR	4260075	4260122	.	-	.	Parent=Os05t0171000-01
Chr05	irgsp1_rep	CDS	4259967	4260074	.	-	0	Parent=Os05t0171000-01
Chr05	irgsp1_rep	CDS	4256564	4258493	.	-	0	Parent=Os05t0171000-01
Chr05	irgsp1_rep	CDS	4256046	4256482	.	-	2	Parent=Os05t0171000-01
Chr05	irgsp1_rep	three_prime_UTR	4255849	4256045	.	-	.	Parent=Os05t0171000-01
Chr05	irgsp1_rep	mRNA	4256062	4258888	.	+	.	ID=Os05t0171050-01;Name=Os05t0171050-01;Locus_id=Os05g0171050;Note=Similar to Phospholipase D alpha 1 precursor (EC 3.1.4.4) (PLD alpha 1) (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1).;Transcript_evidence=AK240959 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065045G08;TENOR=Os05t0171050-01;KEGG=Os05t0171050-01 (EC:3.1.4.4)
Chr05	irgsp1_rep	five_prime_UTR	4256062	4256513	.	+	.	Parent=Os05t0171050-01
Chr05	irgsp1_rep	CDS	4256514	4258625	.	+	0	Parent=Os05t0171050-01
Chr05	irgsp1_rep	three_prime_UTR	4258626	4258888	.	+	.	Parent=Os05t0171050-01
Chr05	irgsp1_rep	mRNA	4262642	4263449	.	+	.	ID=Os05t0171200-01;Name=Os05t0171200-01;Locus_id=Os05g0171200;Note=Embryo-specific 3 family protein.;Transcript_evidence=AK062702 (DDBJ%2C Best hit);ORF_evidence=B6U3F4 (UniProt);InterPro=Lipase/lipooxygenase%2C PLAT/LH2 (IPR008976),Embryo-specific 3 (IPR010417);NIAS_FLcDNA=001-106-B03;Expression=AK062702;TENOR=Os05t0171200-01;KEGG=Os05t0171200-01
Chr05	irgsp1_rep	five_prime_UTR	4262642	4262675	.	+	.	Parent=Os05t0171200-01
Chr05	irgsp1_rep	CDS	4262676	4262780	.	+	0	Parent=Os05t0171200-01
Chr05	irgsp1_rep	CDS	4262874	4263311	.	+	0	Parent=Os05t0171200-01
Chr05	irgsp1_rep	three_prime_UTR	4263312	4263449	.	+	.	Parent=Os05t0171200-01
Chr05	irgsp1_rep	mRNA	4266371	4270127	.	+	.	ID=Os05t0171300-01;Name=Os05t0171300-01;Locus_id=Os05g0171300;CGSNL Gene Symbol=BT1-2;CGSNL Gene Name=BRITTLE 1-2;Oryzabase Gene Symbol Synonym(s)=OsBT1-2;Oryzabase Gene Name Synonym(s)=Brittle-1-2;Note=Similar to Plastidial ADP-glucose transporter.;Transcript_evidence=AK103471 (DDBJ%2C Best hit);ORF_evidence=A2Y0V2 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial inner membrane (GO:0005743),Molecular Function: binding (GO:0005488);InterPro=Mitochondrial carrier protein (IPR002067),Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J033130A21;Oryzabase=8713;Expression=AK103471;TENOR=Os05t0171300-01;KEGG=Os05t0171300-01
Chr05	irgsp1_rep	five_prime_UTR	4266371	4266525	.	+	.	Parent=Os05t0171300-01
Chr05	irgsp1_rep	five_prime_UTR	4266687	4266897	.	+	.	Parent=Os05t0171300-01
Chr05	irgsp1_rep	CDS	4266898	4267512	.	+	0	Parent=Os05t0171300-01
Chr05	irgsp1_rep	CDS	4269039	4269200	.	+	0	Parent=Os05t0171300-01
Chr05	irgsp1_rep	CDS	4269304	4269774	.	+	0	Parent=Os05t0171300-01
Chr05	irgsp1_rep	three_prime_UTR	4269775	4270127	.	+	.	Parent=Os05t0171300-01
Chr05	irgsp1_rep	mRNA	4301546	4306024	.	+	.	ID=Os05t0171900-01;Name=Os05t0171900-01;Locus_id=Os05g0171900;CGSNL Gene Symbol=GLYI6;CGSNL Gene Name=GLYOXALASE I-6;Oryzabase Gene Symbol Synonym(s)=OsGLYI6%2C OsGLYI6.1%2C OsGLYI6.2%2C OsGLYI6.3%2C OsGLYI6.4%2C OsGLYI6.5;Oryzabase Gene Name Synonym(s)=glyoxalase I-6;Note=Glyoxalase/bleomycin resistance protein/dioxygenase domain containing protein.;Transcript_evidence=AK119584 (DDBJ%2C Best hit),AK069814 (DDBJ%2C Best hit),AK119669 (DDBJ%2C Best hit);ORF_evidence=NP_001149571.1 (RefSeq);NIAS_FLcDNA=002-117-C06,J023031G07,002-149-H06;Oryzabase=9356;TENOR=Os05t0171900-01
Chr05	irgsp1_rep	five_prime_UTR	4301546	4301761	.	+	.	Parent=Os05t0171900-01
Chr05	irgsp1_rep	CDS	4301762	4301943	.	+	0	Parent=Os05t0171900-01
Chr05	irgsp1_rep	CDS	4302186	4302291	.	+	1	Parent=Os05t0171900-01
Chr05	irgsp1_rep	CDS	4305236	4305574	.	+	0	Parent=Os05t0171900-01
Chr05	irgsp1_rep	three_prime_UTR	4305575	4306024	.	+	.	Parent=Os05t0171900-01
Chr05	irgsp1_rep	mRNA	4301548	4303158	.	+	.	ID=Os05t0171900-02;Name=Os05t0171900-02;Locus_id=Os05g0171900;CGSNL Gene Symbol=GLYI6;CGSNL Gene Name=GLYOXALASE I-6;Oryzabase Gene Symbol Synonym(s)=OsGLYI6%2C OsGLYI6.1%2C OsGLYI6.2%2C OsGLYI6.3%2C OsGLYI6.4%2C OsGLYI6.5;Oryzabase Gene Name Synonym(s)=glyoxalase I-6;Note=Similar to Lactoylglutathione lyase.;Transcript_evidence=AK106348 (DDBJ%2C Best hit);ORF_evidence=B4UW95 (UniProt);InterPro=Glyoxalase/fosfomycin resistance/dioxygenase (IPR004360);NIAS_FLcDNA=002-101-H07;Oryzabase=9356;Expression=AK106348;TENOR=Os05t0171900-02;KEGG=Os05t0171900-02
Chr05	irgsp1_rep	five_prime_UTR	4301548	4301761	.	+	.	Parent=Os05t0171900-02
Chr05	irgsp1_rep	CDS	4301762	4301943	.	+	0	Parent=Os05t0171900-02
Chr05	irgsp1_rep	CDS	4302223	4302361	.	+	1	Parent=Os05t0171900-02
Chr05	irgsp1_rep	three_prime_UTR	4302362	4303158	.	+	.	Parent=Os05t0171900-02
Chr05	irgsp1_rep	mRNA	4305127	4309494	.	-	.	ID=Os05t0172000-01;Name=Os05t0172000-01;Locus_id=Os05g0172000;Oryzabase Gene Symbol Synonym(s)=OsFbox249%2C Os_F0030;Oryzabase Gene Name Synonym(s)=F-box protein 249;Note=Conserved hypothetical protein.;Transcript_evidence=AK067512 (DDBJ%2C Best hit);ORF_evidence=Q65WV5 (UniProt);NIAS_FLcDNA=J013109G08;Oryzabase=17033;TENOR=Os05t0172000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	4309405	4309494	.	-	.	Parent=Os05t0172000-01
Chr05	irgsp1_rep	five_prime_UTR	4307346	4309297	.	-	.	Parent=Os05t0172000-01
Chr05	irgsp1_rep	CDS	4307073	4307345	.	-	0	Parent=Os05t0172000-01
Chr05	irgsp1_rep	three_prime_UTR	4305127	4307072	.	-	.	Parent=Os05t0172000-01
Chr05	irgsp1_rep	mRNA	4312572	4314358	.	-	.	ID=Os05t0172100-01;Name=Os05t0172100-01;Locus_id=Os05g0172100;Note=F-box associated type 1 domain containing protein.;Transcript_evidence=AK068467 (DDBJ%2C Best hit),AK105962 (DDBJ%2C Best hit);ORF_evidence=B8AYL5 (UniProt);InterPro=F-box associated domain%2C type 3 (IPR013187),F-box associated interaction domain (IPR017451);NIAS_FLcDNA=J013156C03,001-205-E03;Expression=AK068467;TENOR=Os05t0172100-01;KEGG=Os05t0172100-01
Chr05	irgsp1_rep	five_prime_UTR	4314283	4314358	.	-	.	Parent=Os05t0172100-01
Chr05	irgsp1_rep	CDS	4313113	4314282	.	-	0	Parent=Os05t0172100-01
Chr05	irgsp1_rep	three_prime_UTR	4312572	4313112	.	-	.	Parent=Os05t0172100-01
Chr05	irgsp1_rep	mRNA	4317909	4323215	.	-	.	ID=Os05t0172300-01;Name=Os05t0172300-01;Locus_id=Os05g0172300;Note=Domain of unknown function DUF632 domain containing protein.;Transcript_evidence=AK240993 (DDBJ%2C Best hit);ORF_evidence=B9FMQ4 (UniProt);InterPro=Domain of unknown function DUF632 (IPR006867),Domain of unknown function DUF630 (IPR006868);NIAS_FLcDNA=J065052C17;TENOR=Os05t0172300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	4322926	4323215	.	-	.	Parent=Os05t0172300-01
Chr05	irgsp1_rep	five_prime_UTR	4321357	4321492	.	-	.	Parent=Os05t0172300-01
Chr05	irgsp1_rep	CDS	4320399	4321356	.	-	0	Parent=Os05t0172300-01
Chr05	irgsp1_rep	CDS	4320211	4320291	.	-	2	Parent=Os05t0172300-01
Chr05	irgsp1_rep	CDS	4319911	4320128	.	-	2	Parent=Os05t0172300-01
Chr05	irgsp1_rep	CDS	4319266	4319489	.	-	0	Parent=Os05t0172300-01
Chr05	irgsp1_rep	CDS	4318219	4318906	.	-	1	Parent=Os05t0172300-01
Chr05	irgsp1_rep	three_prime_UTR	4317909	4318218	.	-	.	Parent=Os05t0172300-01
Chr05	irgsp1_rep	mRNA	4326514	4326915	.	-	.	ID=Os05t0172400-00;Name=Os05t0172400-00;Locus_id=Os05g0172400;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2Y2H5 (UniProt);TENOR=Os05t0172400-00
Chr05	irgsp1_rep	CDS	4326514	4326915	.	-	0	Parent=Os05t0172400-00
Chr05	irgsp1_rep	mRNA	4329770	4331343	.	-	.	ID=Os05t0172500-01;Name=Os05t0172500-01;Locus_id=Os05g0172500;Oryzabase Gene Symbol Synonym(s)=OsFbox250%2C Os_F0011;Oryzabase Gene Name Synonym(s)=F-box protein 250;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK102960 (DDBJ%2C Best hit);ORF_evidence=B8B029 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated domain%2C type 3 (IPR013187),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033115H20;Oryzabase=17034;Expression=AK102960;TENOR=Os05t0172500-01;KEGG=Os05t0172500-01
Chr05	irgsp1_rep	five_prime_UTR	4331241	4331343	.	-	.	Parent=Os05t0172500-01
Chr05	irgsp1_rep	five_prime_UTR	4331142	4331159	.	-	.	Parent=Os05t0172500-01
Chr05	irgsp1_rep	CDS	4329993	4331141	.	-	0	Parent=Os05t0172500-01
Chr05	irgsp1_rep	three_prime_UTR	4329770	4329992	.	-	.	Parent=Os05t0172500-01
Chr05	irgsp1_rep	mRNA	4365501	4370561	.	+	.	ID=Os05t0172800-01;Name=Os05t0172800-01;Locus_id=Os05g0172800;Note=Conserved hypothetical protein.;Transcript_evidence=AK108688 (DDBJ%2C Best hit);ORF_evidence=NP_001055025.1 (RefSeq);NIAS_FLcDNA=002-149-C10;TENOR=Os05t0172800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	4365501	4365955	.	+	.	Parent=Os05t0172800-01
Chr05	irgsp1_rep	CDS	4365956	4366070	.	+	0	Parent=Os05t0172800-01
Chr05	irgsp1_rep	CDS	4366157	4366259	.	+	2	Parent=Os05t0172800-01
Chr05	irgsp1_rep	CDS	4368094	4368097	.	+	1	Parent=Os05t0172800-01
Chr05	irgsp1_rep	three_prime_UTR	4368098	4368147	.	+	.	Parent=Os05t0172800-01
Chr05	irgsp1_rep	three_prime_UTR	4368797	4369045	.	+	.	Parent=Os05t0172800-01
Chr05	irgsp1_rep	three_prime_UTR	4369770	4370023	.	+	.	Parent=Os05t0172800-01
Chr05	irgsp1_rep	three_prime_UTR	4370372	4370561	.	+	.	Parent=Os05t0172800-01
Chr05	irgsp1_rep	mRNA	4401883	4407256	.	+	.	ID=Os05t0173500-01;Name=Os05t0173500-01;Locus_id=Os05g0173500;Note=Conserved hypothetical protein.;Transcript_evidence=AK105434 (DDBJ%2C Best hit);ORF_evidence=Q65WU5 (UniProt);NIAS_FLcDNA=001-124-F10;Expression=AK105434;TENOR=Os05t0173500-01;KEGG=Os05t0173500-01
Chr05	irgsp1_rep	five_prime_UTR	4401883	4402123	.	+	.	Parent=Os05t0173500-01
Chr05	irgsp1_rep	CDS	4402124	4402296	.	+	0	Parent=Os05t0173500-01
Chr05	irgsp1_rep	CDS	4402384	4403263	.	+	1	Parent=Os05t0173500-01
Chr05	irgsp1_rep	CDS	4403350	4403535	.	+	0	Parent=Os05t0173500-01
Chr05	irgsp1_rep	CDS	4405709	4405810	.	+	0	Parent=Os05t0173500-01
Chr05	irgsp1_rep	CDS	4405887	4405928	.	+	0	Parent=Os05t0173500-01
Chr05	irgsp1_rep	CDS	4406030	4406125	.	+	0	Parent=Os05t0173500-01
Chr05	irgsp1_rep	CDS	4406203	4406295	.	+	0	Parent=Os05t0173500-01
Chr05	irgsp1_rep	CDS	4406408	4406527	.	+	0	Parent=Os05t0173500-01
Chr05	irgsp1_rep	CDS	4406637	4406669	.	+	0	Parent=Os05t0173500-01
Chr05	irgsp1_rep	CDS	4406756	4406806	.	+	0	Parent=Os05t0173500-01
Chr05	irgsp1_rep	CDS	4406931	4407041	.	+	0	Parent=Os05t0173500-01
Chr05	irgsp1_rep	three_prime_UTR	4407042	4407256	.	+	.	Parent=Os05t0173500-01
Chr05	irgsp1_rep	mRNA	4401894	4407138	.	+	.	ID=Os05t0173500-02;Name=Os05t0173500-02;Locus_id=Os05g0173500;Note=Hypothetical conserved gene.;Transcript_evidence=AK103535 (DDBJ%2C Best hit);ORF_evidence=Q65WU5 (UniProt);NIAS_FLcDNA=J033132B04;Expression=AK103535;TENOR=Os05t0173500-02;KEGG=Os05t0173500-02
Chr05	irgsp1_rep	five_prime_UTR	4401894	4402123	.	+	.	Parent=Os05t0173500-02
Chr05	irgsp1_rep	CDS	4402124	4403263	.	+	0	Parent=Os05t0173500-02
Chr05	irgsp1_rep	CDS	4403350	4403535	.	+	0	Parent=Os05t0173500-02
Chr05	irgsp1_rep	CDS	4405709	4405810	.	+	0	Parent=Os05t0173500-02
Chr05	irgsp1_rep	CDS	4405887	4405928	.	+	0	Parent=Os05t0173500-02
Chr05	irgsp1_rep	CDS	4406030	4406125	.	+	0	Parent=Os05t0173500-02
Chr05	irgsp1_rep	CDS	4406203	4406295	.	+	0	Parent=Os05t0173500-02
Chr05	irgsp1_rep	CDS	4406408	4406527	.	+	0	Parent=Os05t0173500-02
Chr05	irgsp1_rep	CDS	4406637	4406669	.	+	0	Parent=Os05t0173500-02
Chr05	irgsp1_rep	CDS	4406756	4406806	.	+	0	Parent=Os05t0173500-02
Chr05	irgsp1_rep	CDS	4406931	4407041	.	+	0	Parent=Os05t0173500-02
Chr05	irgsp1_rep	three_prime_UTR	4407042	4407138	.	+	.	Parent=Os05t0173500-02
Chr05	irgsp1_rep	mRNA	4401939	4408271	.	+	.	ID=Os05t0173500-03;Name=Os05t0173500-03;Locus_id=Os05g0173500;Note=Hypothetical conserved gene.;Transcript_evidence=AK287466 (DDBJ%2C Best hit);ORF_evidence=B9FMQ8 (UniProt);NIAS_FLcDNA=J043021K09;TENOR=Os05t0173500-03;KEGG=Os05t0173500-03
Chr05	irgsp1_rep	five_prime_UTR	4401939	4402123	.	+	.	Parent=Os05t0173500-03
Chr05	irgsp1_rep	CDS	4402124	4403263	.	+	0	Parent=Os05t0173500-03
Chr05	irgsp1_rep	CDS	4403350	4403535	.	+	0	Parent=Os05t0173500-03
Chr05	irgsp1_rep	CDS	4405709	4405810	.	+	0	Parent=Os05t0173500-03
Chr05	irgsp1_rep	CDS	4405887	4405928	.	+	0	Parent=Os05t0173500-03
Chr05	irgsp1_rep	CDS	4406030	4406125	.	+	0	Parent=Os05t0173500-03
Chr05	irgsp1_rep	CDS	4406203	4406295	.	+	0	Parent=Os05t0173500-03
Chr05	irgsp1_rep	CDS	4406408	4406527	.	+	0	Parent=Os05t0173500-03
Chr05	irgsp1_rep	CDS	4406637	4406669	.	+	0	Parent=Os05t0173500-03
Chr05	irgsp1_rep	CDS	4406756	4406806	.	+	0	Parent=Os05t0173500-03
Chr05	irgsp1_rep	CDS	4406931	4407009	.	+	0	Parent=Os05t0173500-03
Chr05	irgsp1_rep	CDS	4407876	4407931	.	+	2	Parent=Os05t0173500-03
Chr05	irgsp1_rep	three_prime_UTR	4407932	4408271	.	+	.	Parent=Os05t0173500-03
Chr05	irgsp1_rep	mRNA	4412922	4414787	.	+	.	ID=Os05t0173700-01;Name=Os05t0173700-01;Locus_id=Os05g0173700;Note=Similar to DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment).;Transcript_evidence=AK063470 (DDBJ%2C Best hit);ORF_evidence=NP_001105718.1 (RefSeq);GO=Biological Process: DNA replication (GO:0006260),Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP binding (GO:0005524);InterPro=Mini-Chromosome maintenance%2C DNA-dependent ATPase (IPR001208);NIAS_FLcDNA=001-116-A05;Expression=AK063470;TENOR=Os05t0173700-01;KEGG=Os05t0173700-01
Chr05	irgsp1_rep	five_prime_UTR	4412922	4413184	.	+	.	Parent=Os05t0173700-01
Chr05	irgsp1_rep	five_prime_UTR	4413265	4413511	.	+	.	Parent=Os05t0173700-01
Chr05	irgsp1_rep	CDS	4413512	4413632	.	+	0	Parent=Os05t0173700-01
Chr05	irgsp1_rep	CDS	4413705	4413889	.	+	2	Parent=Os05t0173700-01
Chr05	irgsp1_rep	three_prime_UTR	4413890	4413930	.	+	.	Parent=Os05t0173700-01
Chr05	irgsp1_rep	three_prime_UTR	4414010	4414096	.	+	.	Parent=Os05t0173700-01
Chr05	irgsp1_rep	three_prime_UTR	4414195	4414223	.	+	.	Parent=Os05t0173700-01
Chr05	irgsp1_rep	three_prime_UTR	4414388	4414787	.	+	.	Parent=Os05t0173700-01
Chr05	irgsp1_rep	mRNA	4415787	4416721	.	-	.	ID=Os05t0173800-01;Name=Os05t0173800-01;Locus_id=Os05g0173800;Note=TPP-binding enzymes%2C conserved site domain containing protein.;Transcript_evidence=AK106805 (DDBJ%2C Best hit);ORF_evidence=A2Y0W3 (UniProt);NIAS_FLcDNA=002-116-C03;Expression=AK106805;TENOR=Os05t0173800-01;KEGG=Os05t0173800-01
Chr05	irgsp1_rep	five_prime_UTR	4416624	4416721	.	-	.	Parent=Os05t0173800-01
Chr05	irgsp1_rep	CDS	4416009	4416623	.	-	0	Parent=Os05t0173800-01
Chr05	irgsp1_rep	three_prime_UTR	4415787	4416008	.	-	.	Parent=Os05t0173800-01
Chr05	irgsp1_rep	mRNA	4497192	4497674	.	-	.	ID=Os05t0175450-00;Name=Os05t0175450-00;Locus_id=Os05g0175450;Note=Similar to OSIGBa0157K09-H0214G12.6 protein.;Transcript_evidence=AK109180 (DDBJ%2C Secondary hit);ORF_evidence=Q01HF1 (UniProt);Expression=AK109180;TENOR=Os05t0175450-00;KEGG=Os05t0175450-00
Chr05	irgsp1_rep	five_prime_UTR	4497614	4497674	.	-	.	Parent=Os05t0175450-00
Chr05	irgsp1_rep	CDS	4497197	4497613	.	-	0	Parent=Os05t0175450-00
Chr05	irgsp1_rep	three_prime_UTR	4497192	4497196	.	-	.	Parent=Os05t0175450-00
Chr05	irgsp1_rep	mRNA	4551239	4556486	.	-	.	ID=Os05t0175800-00;Name=Os05t0175800-00;Locus_id=Os05g0175800;Oryzabase Gene Symbol Synonym(s)=OsFbox251%2C Os_F0085;Oryzabase Gene Name Synonym(s)=F-box protein 251;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6AT28 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17035;TENOR=Os05t0175800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	4555872	4556486	.	-	0	Parent=Os05t0175800-00
Chr05	irgsp1_rep	CDS	4551930	4552182	.	-	0	Parent=Os05t0175800-00
Chr05	irgsp1_rep	CDS	4551239	4551837	.	-	2	Parent=Os05t0175800-00
Chr05	irgsp1_rep	mRNA	4559242	4562417	.	+	.	ID=Os05t0176000-01;Name=Os05t0176000-01;Locus_id=Os05g0176000;Oryzabase Gene Symbol Synonym(s)=OsMed36_2%2C Med36_2;Oryzabase Gene Name Synonym(s)=Nucleolar protein 1%2C Mediator 36_2;Note=Similar to fibrillarin-2.;Transcript_evidence=AK243312 (DDBJ%2C Best hit);ORF_evidence=B6T4G7 (UniProt);GO=Biological Process: rRNA processing (GO:0006364),Biological Process: tRNA processing (GO:0008033),Molecular Function: RNA binding (GO:0003723),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Fibrillarin (IPR000692),Fibrillarin%2C conserved site (IPR020813);NIAS_FLcDNA=J100055L06;Oryzabase=17642;TENOR=Os05t0176000-01;KEGG=Os05t0176000-01
Chr05	irgsp1_rep	five_prime_UTR	4559242	4559324	.	+	.	Parent=Os05t0176000-01
Chr05	irgsp1_rep	CDS	4559325	4559340	.	+	0	Parent=Os05t0176000-01
Chr05	irgsp1_rep	CDS	4559421	4559737	.	+	2	Parent=Os05t0176000-01
Chr05	irgsp1_rep	CDS	4560056	4560151	.	+	0	Parent=Os05t0176000-01
Chr05	irgsp1_rep	CDS	4560276	4560353	.	+	0	Parent=Os05t0176000-01
Chr05	irgsp1_rep	CDS	4560438	4560614	.	+	0	Parent=Os05t0176000-01
Chr05	irgsp1_rep	CDS	4561899	4561967	.	+	0	Parent=Os05t0176000-01
Chr05	irgsp1_rep	CDS	4562081	4562257	.	+	0	Parent=Os05t0176000-01
Chr05	irgsp1_rep	three_prime_UTR	4562258	4562417	.	+	.	Parent=Os05t0176000-01
Chr05	irgsp1_rep	mRNA	4560441	4562256	.	-	.	ID=Os05t0176050-00;Name=Os05t0176050-00;Locus_id=Os05g0176050;Note=Non-protein coding transcript.;Transcript_evidence=BT017129 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0176050-00
Chr05	irgsp1_rep	exon	4562079	4562256	.	-	.	Parent=Os05t0176050-00
Chr05	irgsp1_rep	exon	4561895	4561970	.	-	.	Parent=Os05t0176050-00
Chr05	irgsp1_rep	exon	4560441	4560610	.	-	.	Parent=Os05t0176050-00
Chr05	irgsp1_rep	mRNA	4568537	4571358	.	-	.	ID=Os05t0176100-01;Name=Os05t0176100-01;Locus_id=Os05g0176100;CGSNL Gene Symbol=CESA1;CGSNL Gene Name=CELLULOSE SYNTHASE A1;Oryzabase Gene Symbol Synonym(s)=OsCesA1%2C OsCesA-1%2C OsCESA1%2C OS_CESA01%2C CesA1;Oryzabase Gene Name Synonym(s)=Cellulose synthase A catalytic subunit 1 [UDP-forming]%2C Cellulose synthase A catalytic subunit 1%2C RSW1-like cellulose synthase catalytic subunit;Note=Similar to Cellulose synthase BoCesA1.;Transcript_evidence=AK067850 (DDBJ%2C Best hit);ORF_evidence=D5FJ45 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J013123A09;Oryzabase=9053;TENOR=Os05t0176100-01
Chr05	irgsp1_rep	five_prime_UTR	4571171	4571358	.	-	.	Parent=Os05t0176100-01
Chr05	irgsp1_rep	CDS	4571084	4571170	.	-	0	Parent=Os05t0176100-01
Chr05	irgsp1_rep	CDS	4570319	4570514	.	-	0	Parent=Os05t0176100-01
Chr05	irgsp1_rep	CDS	4569942	4570129	.	-	2	Parent=Os05t0176100-01
Chr05	irgsp1_rep	CDS	4569757	4569841	.	-	0	Parent=Os05t0176100-01
Chr05	irgsp1_rep	CDS	4569484	4569673	.	-	2	Parent=Os05t0176100-01
Chr05	irgsp1_rep	CDS	4568879	4569145	.	-	1	Parent=Os05t0176100-01
Chr05	irgsp1_rep	CDS	4568537	4568778	.	-	1	Parent=Os05t0176100-01
Chr05	irgsp1_rep	mRNA	4565244	4571355	.	-	.	ID=Os05t0176100-05;Name=Os05t0176100-05;Locus_id=Os05g0176100;CGSNL Gene Symbol=CESA1;CGSNL Gene Name=CELLULOSE SYNTHASE A1;Oryzabase Gene Symbol Synonym(s)=OsCesA1%2C OsCesA-1%2C OsCESA1%2C OS_CESA01%2C CesA1;Oryzabase Gene Name Synonym(s)=Cellulose synthase A catalytic subunit 1 [UDP-forming]%2C Cellulose synthase A catalytic subunit 1%2C RSW1-like cellulose synthase catalytic subunit;Note=Similar to RSW1-like cellulose synthase catalytic subunit (Fragment).;Transcript_evidence=AK100188 (DDBJ%2C Best hit),AK067967 (DDBJ%2C Best hit),AK098978 (DDBJ%2C Best hit),AK099228 (DDBJ%2C Best hit),AK099281 (DDBJ%2C Best hit),AK102140 (DDBJ%2C Best hit);ORF_evidence=Q4U100 (UniProt);NIAS_FLcDNA=J023034D20,J013125H24,J013092B06,J013091P03,J023125F05,J033085K01;Oryzabase=9053;Expression=AK100188;TENOR=Os05t0176100-05;KEGG=Os05t0176100-05 (EC:2.4.1.12)
Chr05	irgsp1_rep	five_prime_UTR	4571171	4571355	.	-	.	Parent=Os05t0176100-05
Chr05	irgsp1_rep	CDS	4571084	4571170	.	-	0	Parent=Os05t0176100-05
Chr05	irgsp1_rep	CDS	4570319	4570514	.	-	0	Parent=Os05t0176100-05
Chr05	irgsp1_rep	CDS	4569942	4570129	.	-	2	Parent=Os05t0176100-05
Chr05	irgsp1_rep	CDS	4569757	4569841	.	-	0	Parent=Os05t0176100-05
Chr05	irgsp1_rep	CDS	4569484	4569673	.	-	2	Parent=Os05t0176100-05
Chr05	irgsp1_rep	CDS	4568879	4569145	.	-	1	Parent=Os05t0176100-05
Chr05	irgsp1_rep	CDS	4568433	4568778	.	-	1	Parent=Os05t0176100-05
Chr05	irgsp1_rep	CDS	4568216	4568353	.	-	0	Parent=Os05t0176100-05
Chr05	irgsp1_rep	CDS	4568003	4568128	.	-	0	Parent=Os05t0176100-05
Chr05	irgsp1_rep	CDS	4567713	4567925	.	-	0	Parent=Os05t0176100-05
Chr05	irgsp1_rep	CDS	4567381	4567639	.	-	0	Parent=Os05t0176100-05
Chr05	irgsp1_rep	CDS	4567024	4567220	.	-	2	Parent=Os05t0176100-05
Chr05	irgsp1_rep	CDS	4566531	4566881	.	-	0	Parent=Os05t0176100-05
Chr05	irgsp1_rep	CDS	4565724	4566311	.	-	0	Parent=Os05t0176100-05
Chr05	irgsp1_rep	three_prime_UTR	4565244	4565723	.	-	.	Parent=Os05t0176100-05
Chr05	irgsp1_rep	mRNA	4565392	4567178	.	-	.	ID=Os05t0176100-06;Name=Os05t0176100-06;Locus_id=Os05g0176100;CGSNL Gene Symbol=CESA1;CGSNL Gene Name=CELLULOSE SYNTHASE A1;Oryzabase Gene Symbol Synonym(s)=OsCesA1%2C OsCesA-1%2C OsCESA1%2C OS_CESA01%2C CesA1;Oryzabase Gene Name Synonym(s)=Cellulose synthase A catalytic subunit 1 [UDP-forming]%2C Cellulose synthase A catalytic subunit 1%2C RSW1-like cellulose synthase catalytic subunit;Note=Similar to Cellulose synthase BoCesA1.;Transcript_evidence=AK060838 (DDBJ%2C Best hit);ORF_evidence=Q4U100 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150);NIAS_FLcDNA=001-034-D02;Oryzabase=9053;Expression=AK060838;TENOR=Os05t0176100-06;KEGG=Os05t0176100-06 (EC:2.4.1.12)
Chr05	irgsp1_rep	five_prime_UTR	4567177	4567178	.	-	.	Parent=Os05t0176100-06
Chr05	irgsp1_rep	CDS	4567024	4567176	.	-	0	Parent=Os05t0176100-06
Chr05	irgsp1_rep	CDS	4566531	4566881	.	-	0	Parent=Os05t0176100-06
Chr05	irgsp1_rep	CDS	4565724	4566311	.	-	0	Parent=Os05t0176100-06
Chr05	irgsp1_rep	three_prime_UTR	4565392	4565723	.	-	.	Parent=Os05t0176100-06
Chr05	irgsp1_rep	mRNA	4565295	4566610	.	-	.	ID=Os05t0176100-07;Name=Os05t0176100-07;Locus_id=Os05g0176100;CGSNL Gene Symbol=CESA1;CGSNL Gene Name=CELLULOSE SYNTHASE A1;Oryzabase Gene Symbol Synonym(s)=OsCesA1%2C OsCesA-1%2C OsCESA1%2C OS_CESA01%2C CesA1;Oryzabase Gene Name Synonym(s)=Cellulose synthase A catalytic subunit 1 [UDP-forming]%2C Cellulose synthase A catalytic subunit 1%2C RSW1-like cellulose synthase catalytic subunit;Note=Similar to Cellulose synthase BoCesA8.;Transcript_evidence=AK060079 (DDBJ%2C Best hit);ORF_evidence=Q4U101 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150);NIAS_FLcDNA=006-306-C08;Oryzabase=9053;Expression=AK060079;TENOR=Os05t0176100-07;KEGG=Os05t0176100-07 (EC:2.4.1.12)
Chr05	irgsp1_rep	five_prime_UTR	4566609	4566610	.	-	.	Parent=Os05t0176100-07
Chr05	irgsp1_rep	CDS	4566531	4566608	.	-	0	Parent=Os05t0176100-07
Chr05	irgsp1_rep	CDS	4565724	4566311	.	-	0	Parent=Os05t0176100-07
Chr05	irgsp1_rep	three_prime_UTR	4565295	4565723	.	-	.	Parent=Os05t0176100-07
Chr05	irgsp1_rep	mRNA	4578959	4579552	.	-	.	ID=Os05t0176300-01;Name=Os05t0176300-01;Locus_id=Os05g0176300;Oryzabase Gene Symbol Synonym(s)=OsSTA141;Note=Conserved hypothetical protein.;Transcript_evidence=AK243343 (DDBJ%2C Best hit);ORF_evidence=NP_001174241.1 (RefSeq);NIAS_FLcDNA=J100059O08;Oryzabase=19430;TENOR=Os05t0176300-01;KEGG=Os05t0176300-01
Chr05	irgsp1_rep	five_prime_UTR	4579551	4579552	.	-	.	Parent=Os05t0176300-01
Chr05	irgsp1_rep	CDS	4579251	4579550	.	-	0	Parent=Os05t0176300-01
Chr05	irgsp1_rep	three_prime_UTR	4578959	4579250	.	-	.	Parent=Os05t0176300-01
Chr05	irgsp1_rep	mRNA	4581331	4584038	.	-	.	ID=Os05t0176400-01;Name=Os05t0176400-01;Locus_id=Os05g0176400;CGSNL Gene Symbol=C3H34;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 34;Oryzabase Gene Symbol Synonym(s)=OsC3H34%2C DLN132%2C OsDLN132;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 34%2C DLN repressor 132%2C DLN motif protein 132;Note=Zinc finger%2C CCCH-type domain containing protein.;Transcript_evidence=AK102679 (DDBJ%2C Best hit);ORF_evidence=Q6AT25 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=J033102J01;Oryzabase=8599;Expression=AK102679;TENOR=Os05t0176400-01;KEGG=Os05t0176400-01
Chr05	irgsp1_rep	five_prime_UTR	4583947	4584038	.	-	.	Parent=Os05t0176400-01
Chr05	irgsp1_rep	CDS	4583851	4583946	.	-	0	Parent=Os05t0176400-01
Chr05	irgsp1_rep	CDS	4583591	4583701	.	-	0	Parent=Os05t0176400-01
Chr05	irgsp1_rep	CDS	4581545	4582819	.	-	0	Parent=Os05t0176400-01
Chr05	irgsp1_rep	three_prime_UTR	4581331	4581544	.	-	.	Parent=Os05t0176400-01
Chr05	irgsp1_rep	mRNA	4585199	4588999	.	-	.	ID=Os05t0176500-02;Name=Os05t0176500-02;Locus_id=Os05g0176500;Note=ATP10 family protein.;Transcript_evidence=AK059866 (DDBJ%2C Best hit),AK099352 (DDBJ%2C Best hit);ORF_evidence=NP_001148847.1 (RefSeq);NIAS_FLcDNA=006-207-D10,J033029L21;Expression=AK059866;TENOR=Os05t0176500-02;KEGG=Os05t0176500-02
Chr05	irgsp1_rep	five_prime_UTR	4588946	4588999	.	-	.	Parent=Os05t0176500-02
Chr05	irgsp1_rep	CDS	4588838	4588945	.	-	0	Parent=Os05t0176500-02
Chr05	irgsp1_rep	CDS	4588686	4588735	.	-	0	Parent=Os05t0176500-02
Chr05	irgsp1_rep	CDS	4588509	4588572	.	-	1	Parent=Os05t0176500-02
Chr05	irgsp1_rep	CDS	4588145	4588378	.	-	0	Parent=Os05t0176500-02
Chr05	irgsp1_rep	CDS	4586590	4586661	.	-	0	Parent=Os05t0176500-02
Chr05	irgsp1_rep	CDS	4585658	4585818	.	-	0	Parent=Os05t0176500-02
Chr05	irgsp1_rep	CDS	4585400	4585517	.	-	1	Parent=Os05t0176500-02
Chr05	irgsp1_rep	three_prime_UTR	4585199	4585399	.	-	.	Parent=Os05t0176500-02
Chr05	irgsp1_rep	mRNA	4589163	4591594	.	+	.	ID=Os05t0176600-01;Name=Os05t0176600-01;Locus_id=Os05g0176600;Note=Conserved hypothetical protein.;Transcript_evidence=AK071760 (DDBJ%2C Best hit);ORF_evidence=B8AYM1 (UniProt);NIAS_FLcDNA=J023110C14;Expression=AK071760;TENOR=Os05t0176600-01;KEGG=Os05t0176600-01
Chr05	irgsp1_rep	five_prime_UTR	4589163	4589232	.	+	.	Parent=Os05t0176600-01
Chr05	irgsp1_rep	CDS	4589233	4589276	.	+	0	Parent=Os05t0176600-01
Chr05	irgsp1_rep	CDS	4589349	4589446	.	+	1	Parent=Os05t0176600-01
Chr05	irgsp1_rep	CDS	4589550	4589644	.	+	2	Parent=Os05t0176600-01
Chr05	irgsp1_rep	three_prime_UTR	4589645	4591594	.	+	.	Parent=Os05t0176600-01
Chr05	irgsp1_rep	mRNA	4593291	4594041	.	-	.	ID=Os05t0176700-01;Name=Os05t0176700-01;Locus_id=Os05g0176700;Note=Conserved hypothetical protein.;Transcript_evidence=AK071729 (DDBJ%2C Best hit);ORF_evidence=A2Y0X6 (UniProt);NIAS_FLcDNA=J023110H11;Expression=AK071729;TENOR=Os05t0176700-01;KEGG=Os05t0176700-01
Chr05	irgsp1_rep	five_prime_UTR	4593981	4594041	.	-	.	Parent=Os05t0176700-01
Chr05	irgsp1_rep	CDS	4593624	4593980	.	-	0	Parent=Os05t0176700-01
Chr05	irgsp1_rep	three_prime_UTR	4593291	4593623	.	-	.	Parent=Os05t0176700-01
Chr05	irgsp1_rep	mRNA	4600979	4607413	.	-	.	ID=Os05t0176800-01;Name=Os05t0176800-01;Locus_id=Os05g0176800;RAP-DB Gene Symbol Synonym(s)=BOR4%2C OsBOR4;RAP-DB Gene Name Synonym(s)=EFFLUX BORON TRANSPORTER 4%2C Boron transporter 4;CGSNL Gene Symbol=BOR4;CGSNL Gene Name=EFFLUX BORON TRANSPORTER 4;Oryzabase Gene Symbol Synonym(s)=OsBOR4;Oryzabase Gene Name Synonym(s)=Boron transporter 4;Note=Boron efflux transporter%2C Pollen germination and/or tube elongation;Transcript_evidence=DQ421409;ORF_evidence=Q1ZYR6;GO=Biological Process: anion transport (GO:0006820),Cellular Component: integral component of membrane (GO:0016021);InterPro=Bicarbonate transporter%2C C-terminal (IPR011531);Manual Curation=November 25%2C 2014;Literature_PMID=24068795,17675406;Oryzabase=14354;TENOR=Os05t0176800-00
Chr05	irgsp1_rep	CDS	4607307	4607413	.	-	0	Parent=Os05t0176800-01
Chr05	irgsp1_rep	CDS	4607141	4607223	.	-	1	Parent=Os05t0176800-01
Chr05	irgsp1_rep	CDS	4606679	4606871	.	-	2	Parent=Os05t0176800-01
Chr05	irgsp1_rep	CDS	4606444	4606582	.	-	1	Parent=Os05t0176800-01
Chr05	irgsp1_rep	CDS	4606190	4606355	.	-	0	Parent=Os05t0176800-01
Chr05	irgsp1_rep	CDS	4605941	4606107	.	-	2	Parent=Os05t0176800-01
Chr05	irgsp1_rep	CDS	4605670	4605843	.	-	0	Parent=Os05t0176800-01
Chr05	irgsp1_rep	CDS	4605366	4605461	.	-	0	Parent=Os05t0176800-01
Chr05	irgsp1_rep	CDS	4605153	4605269	.	-	0	Parent=Os05t0176800-01
Chr05	irgsp1_rep	CDS	4604486	4604808	.	-	0	Parent=Os05t0176800-01
Chr05	irgsp1_rep	CDS	4603731	4603998	.	-	1	Parent=Os05t0176800-01
Chr05	irgsp1_rep	CDS	4603053	4603187	.	-	0	Parent=Os05t0176800-01
Chr05	irgsp1_rep	CDS	4600979	4601044	.	-	0	Parent=Os05t0176800-01
Chr05	irgsp1_rep	mRNA	4603035	4607228	.	+	.	ID=Os05t0176901-00;Name=Os05t0176901-00;Locus_id=Os05g0176901;Note=Hypothetical protein.;Transcript_evidence=tplb0036c02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0176901-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	4603035	4603040	.	+	.	Parent=Os05t0176901-00
Chr05	irgsp1_rep	CDS	4603041	4603191	.	+	0	Parent=Os05t0176901-00
Chr05	irgsp1_rep	CDS	4603736	4603917	.	+	2	Parent=Os05t0176901-00
Chr05	irgsp1_rep	three_prime_UTR	4603918	4604000	.	+	.	Parent=Os05t0176901-00
Chr05	irgsp1_rep	three_prime_UTR	4604492	4604815	.	+	.	Parent=Os05t0176901-00
Chr05	irgsp1_rep	three_prime_UTR	4605160	4605269	.	+	.	Parent=Os05t0176901-00
Chr05	irgsp1_rep	three_prime_UTR	4605366	4605474	.	+	.	Parent=Os05t0176901-00
Chr05	irgsp1_rep	three_prime_UTR	4605682	4605842	.	+	.	Parent=Os05t0176901-00
Chr05	irgsp1_rep	three_prime_UTR	4605940	4606109	.	+	.	Parent=Os05t0176901-00
Chr05	irgsp1_rep	three_prime_UTR	4606192	4606316	.	+	.	Parent=Os05t0176901-00
Chr05	irgsp1_rep	three_prime_UTR	4606397	4606588	.	+	.	Parent=Os05t0176901-00
Chr05	irgsp1_rep	three_prime_UTR	4606686	4606862	.	+	.	Parent=Os05t0176901-00
Chr05	irgsp1_rep	three_prime_UTR	4607131	4607228	.	+	.	Parent=Os05t0176901-00
Chr05	irgsp1_rep	mRNA	4610870	4612674	.	+	.	ID=Os05t0177000-01;Name=Os05t0177000-01;Locus_id=Os05g0177000;Oryzabase Gene Symbol Synonym(s)=OsFbox252%2C Os_F0066;Oryzabase Gene Name Synonym(s)=F-box protein 252;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK064399 (DDBJ%2C Best hit);ORF_evidence=B8AYM3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-108-G12;Oryzabase=17036;Expression=AK064399;TENOR=Os05t0177000-01;KEGG=Os05t0177000-01
Chr05	irgsp1_rep	five_prime_UTR	4610870	4610925	.	+	.	Parent=Os05t0177000-01
Chr05	irgsp1_rep	CDS	4610926	4611022	.	+	0	Parent=Os05t0177000-01
Chr05	irgsp1_rep	CDS	4611111	4612288	.	+	2	Parent=Os05t0177000-01
Chr05	irgsp1_rep	three_prime_UTR	4612289	4612674	.	+	.	Parent=Os05t0177000-01
Chr05	irgsp1_rep	mRNA	4613625	4615139	.	+	.	ID=Os05t0177100-01;Name=Os05t0177100-01;Locus_id=Os05g0177100;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK064652 (DDBJ%2C Best hit);ORF_evidence=B9FMR7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-114-E10;TENOR=Os05t0177100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	4613625	4614905	.	+	0	Parent=Os05t0177100-01
Chr05	irgsp1_rep	three_prime_UTR	4614906	4615139	.	+	.	Parent=Os05t0177100-01
Chr05	irgsp1_rep	mRNA	4621873	4623045	.	-	.	ID=Os05t0177400-00;Name=Os05t0177400-00;Locus_id=Os05g0177400;Oryzabase Gene Symbol Synonym(s)=OsFbox253%2C Os_F0052;Oryzabase Gene Name Synonym(s)=F-box protein 253;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6AT18 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17037;TENOR=Os05t0177400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	4621873	4623045	.	-	0	Parent=Os05t0177400-00
Chr05	irgsp1_rep	mRNA	4626474	4628310	.	-	.	ID=Os05t0177500-01;Name=Os05t0177500-01;Locus_id=Os05g0177500;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK242999 (DDBJ%2C Best hit);ORF_evidence=B4FAT6 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J090095M22;TENOR=Os05t0177500-01;KEGG=Os05t0177500-01
Chr05	irgsp1_rep	five_prime_UTR	4628173	4628310	.	-	.	Parent=Os05t0177500-01
Chr05	irgsp1_rep	CDS	4626538	4628172	.	-	0	Parent=Os05t0177500-01
Chr05	irgsp1_rep	three_prime_UTR	4626474	4626537	.	-	.	Parent=Os05t0177500-01
Chr05	irgsp1_rep	mRNA	4635440	4644758	.	+	.	ID=Os05t0177800-00;Name=Os05t0177800-00;Locus_id=Os05g0177800;Note=Similar to UDP-glycosyltransferase UGT98B4.;Transcript_evidence=BT009372 (DDBJ);ORF_evidence=C4MF44 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os05t0177800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	4635440	4635912	.	+	0	Parent=Os05t0177800-00
Chr05	irgsp1_rep	CDS	4636080	4636324	.	+	1	Parent=Os05t0177800-00
Chr05	irgsp1_rep	CDS	4644032	4644075	.	+	2	Parent=Os05t0177800-00
Chr05	irgsp1_rep	three_prime_UTR	4644076	4644758	.	+	.	Parent=Os05t0177800-00
Chr05	irgsp1_rep	mRNA	4653190	4658097	.	-	.	ID=Os05t0177900-00;Name=Os05t0177900-00;Locus_id=Os05g0177900;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0059e12 (Wheat FLcDNA);ORF_evidence=B8AYM6 (UniProt);TENOR=Os05t0177900-00
Chr05	irgsp1_rep	CDS	4657430	4658097	.	-	0	Parent=Os05t0177900-00
Chr05	irgsp1_rep	CDS	4653190	4654120	.	-	1	Parent=Os05t0177900-00
Chr05	irgsp1_rep	mRNA	4653226	4658040	.	+	.	ID=Os05t0178000-00;Name=Os05t0178000-00;Locus_id=Os05g0178000;Note=NPH3 domain containing protein.;Transcript_evidence=EU956243 (DDBJ);ORF_evidence=XP_002885094.1 (RefSeq);GO=Biological Process: response to light stimulus (GO:0009416),Molecular Function: signal transducer activity (GO:0004871);InterPro=NPH3 (IPR004249);TENOR=Os05t0178000-00;KEGG=Os05t0178000-00
Chr05	irgsp1_rep	CDS	4653226	4654122	.	+	0	Parent=Os05t0178000-00
Chr05	irgsp1_rep	CDS	4657432	4658040	.	+	0	Parent=Os05t0178000-00
Chr05	irgsp1_rep	mRNA	4660662	4662565	.	-	.	ID=Os05t0178100-01;Name=Os05t0178100-01;Locus_id=Os05g0178100;RAP-DB Gene Symbol Synonym(s)=GA3OX1%2C OsGA3ox1%2C GA3ox1%2C OsGA3OX1;RAP-DB Gene Name Synonym(s)=GIBBERELLIN 3BETA-HYDROXYLASE 1%2C GA 3beta-hydroxylase1%2C GA 3beta-hydroxylase 1%2C Gibberellin(GA)-3 beta-hydroxylase-1;CGSNL Gene Symbol=GA3OX1;CGSNL Gene Name=GIBBERELLIN 3BETA-HYDROXYLASE 1;Oryzabase Gene Symbol Synonym(s)=OsGA3ox1%2C GA3ox1%2C OsGA3OX1;Oryzabase Gene Name Synonym(s)=GA 3beta-hydroxylase1%2C GA 3beta-hydroxylase 1%2C Gibberellin(GA)-3 beta-hydroxylase-1;Note=GA 3beta-hydroxylase1%2C GA metabolism;Transcript_evidence=AB054084 (DDBJ),AK120915 (DDBJ);ORF_evidence=Q94IE3 (UniProt),Q6AT12 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=J023034H12;Manual Curation=May 8%2C 2009;Literature_PMID=11438692,15075394;Oryzabase=2278;TENOR=Os05t0178100-01
Chr05	irgsp1_rep	five_prime_UTR	4662537	4662565	.	-	.	Parent=Os05t0178100-01
Chr05	irgsp1_rep	CDS	4662004	4662536	.	-	0	Parent=Os05t0178100-01
Chr05	irgsp1_rep	CDS	4661746	4661904	.	-	1	Parent=Os05t0178100-01
Chr05	irgsp1_rep	CDS	4660901	4661354	.	-	1	Parent=Os05t0178100-01
Chr05	irgsp1_rep	three_prime_UTR	4660662	4660900	.	-	.	Parent=Os05t0178100-01
Chr05	irgsp1_rep	mRNA	4665325	4667853	.	-	.	ID=Os05t0178300-01;Name=Os05t0178300-01;Locus_id=Os05g0178300;CGSNL Gene Symbol=CDT5;CGSNL Gene Name=CADMIUM TOLERANT 5;Oryzabase Gene Symbol Synonym(s)=OsCDT5;Oryzabase Gene Name Synonym(s)=sativa DcCDT1 homologue 5%2C cadmium tolerance 5;Note=Similar to Cadmium tolerant 1.;Transcript_evidence=AK099514 (DDBJ%2C Best hit),AK059243 (DDBJ%2C Best hit);ORF_evidence=B5BSU2 (UniProt);NIAS_FLcDNA=J013029L20,001-024-F11;Oryzabase=8302;Expression=AK099514;TENOR=Os05t0178300-01;KEGG=Os05t0178300-01
Chr05	irgsp1_rep	five_prime_UTR	4667735	4667853	.	-	.	Parent=Os05t0178300-01
Chr05	irgsp1_rep	CDS	4667649	4667734	.	-	0	Parent=Os05t0178300-01
Chr05	irgsp1_rep	CDS	4665590	4665668	.	-	1	Parent=Os05t0178300-01
Chr05	irgsp1_rep	three_prime_UTR	4665325	4665589	.	-	.	Parent=Os05t0178300-01
Chr05	irgsp1_rep	mRNA	4669135	4672258	.	-	.	ID=Os05t0178400-01;Name=Os05t0178400-01;Locus_id=Os05g0178400;CGSNL Gene Symbol=PP2A-B'IOTA;CGSNL Gene Name=PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' IOTA;Oryzabase Gene Symbol Synonym(s)=OsPP2A-B'iota%2C OsB'iota%2C B'iota-PP2A;Oryzabase Gene Name Synonym(s)=protein phosphatase 2A B'iota subunit%2C PP2A regulatory subunit B'iota;Note=Similar to Protein phosphatase 2A B'kappa subunit.;Transcript_evidence=AK102847 (DDBJ%2C Best hit);ORF_evidence=Q8L6I7 (UniProt);GO=Biological Process: signal transduction (GO:0007165),Cellular Component: protein phosphatase type 2A complex (GO:0000159),Molecular Function: binding (GO:0005488),Molecular Function: protein phosphatase type 2A regulator activity (GO:0008601);InterPro=Protein phosphatase 2A%2C regulatory B subunit%2C B56 (IPR002554),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033110A21;Oryzabase=23329;Expression=AK102847;TENOR=Os05t0178400-01;KEGG=Os05t0178400-01
Chr05	irgsp1_rep	five_prime_UTR	4672074	4672258	.	-	.	Parent=Os05t0178400-01
Chr05	irgsp1_rep	CDS	4670967	4672073	.	-	0	Parent=Os05t0178400-01
Chr05	irgsp1_rep	CDS	4669396	4669764	.	-	0	Parent=Os05t0178400-01
Chr05	irgsp1_rep	three_prime_UTR	4669135	4669395	.	-	.	Parent=Os05t0178400-01
Chr05	irgsp1_rep	mRNA	4681468	4684497	.	-	.	ID=Os05t0178600-01;Name=Os05t0178600-01;Locus_id=Os05g0178600;CGSNL Gene Symbol=IAA15;Oryzabase Gene Symbol Synonym(s)=OsIAA15;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 15;Note=Similar to Auxin-responsive protein (Aux/IAA) (Fragment).;Transcript_evidence=AK100080 (DDBJ%2C Best hit),AK061796 (DDBJ%2C Best hit);ORF_evidence=Q6AT10 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Aux/IAA-ARF-dimerisation (IPR011525);NIAS_FLcDNA=J023001M24,001-039-G05;Oryzabase=10904;Expression=AK100080;TENOR=Os05t0178600-01;KEGG=Os05t0178600-01
Chr05	irgsp1_rep	five_prime_UTR	4684374	4684497	.	-	.	Parent=Os05t0178600-01
Chr05	irgsp1_rep	CDS	4684138	4684373	.	-	0	Parent=Os05t0178600-01
Chr05	irgsp1_rep	CDS	4683841	4684049	.	-	1	Parent=Os05t0178600-01
Chr05	irgsp1_rep	CDS	4683628	4683742	.	-	2	Parent=Os05t0178600-01
Chr05	irgsp1_rep	CDS	4682040	4682101	.	-	1	Parent=Os05t0178600-01
Chr05	irgsp1_rep	CDS	4681906	4681922	.	-	2	Parent=Os05t0178600-01
Chr05	irgsp1_rep	three_prime_UTR	4681468	4681905	.	-	.	Parent=Os05t0178600-01
Chr05	irgsp1_rep	mRNA	4704643	4708577	.	+	.	ID=Os05t0178900-01;Name=Os05t0178900-01;Locus_id=Os05g0178900;Note=PRP38 family protein.;Transcript_evidence=AK065299 (DDBJ%2C Best hit);ORF_evidence=B6TSE1 (UniProt);InterPro=Pre-mRNA-splicing factor 38 (IPR005037);NIAS_FLcDNA=J013002N17;Expression=AK065299;TENOR=Os05t0178900-01;KEGG=Os05t0178900-01
Chr05	irgsp1_rep	five_prime_UTR	4704643	4704910	.	+	.	Parent=Os05t0178900-01
Chr05	irgsp1_rep	five_prime_UTR	4705811	4705828	.	+	.	Parent=Os05t0178900-01
Chr05	irgsp1_rep	CDS	4705829	4706158	.	+	0	Parent=Os05t0178900-01
Chr05	irgsp1_rep	three_prime_UTR	4706159	4706599	.	+	.	Parent=Os05t0178900-01
Chr05	irgsp1_rep	three_prime_UTR	4706876	4708577	.	+	.	Parent=Os05t0178900-01
Chr05	irgsp1_rep	mRNA	4704697	4708657	.	+	.	ID=Os05t0178900-02;Name=Os05t0178900-02;Locus_id=Os05g0178900;Note=PRP38 family protein.;Transcript_evidence=AK121556 (DDBJ%2C Best hit);ORF_evidence=B6TSE1 (UniProt);InterPro=Pre-mRNA-splicing factor 38 (IPR005037),Pre-mRNA-splicing factor 38%2C C-terminal (IPR024767);NIAS_FLcDNA=J033033I04;Expression=AK121556;TENOR=Os05t0178900-02;KEGG=Os05t0178900-02
Chr05	irgsp1_rep	five_prime_UTR	4704697	4704908	.	+	.	Parent=Os05t0178900-02
Chr05	irgsp1_rep	five_prime_UTR	4705811	4705828	.	+	.	Parent=Os05t0178900-02
Chr05	irgsp1_rep	CDS	4705829	4706116	.	+	0	Parent=Os05t0178900-02
Chr05	irgsp1_rep	CDS	4706519	4706599	.	+	0	Parent=Os05t0178900-02
Chr05	irgsp1_rep	CDS	4706876	4706947	.	+	0	Parent=Os05t0178900-02
Chr05	irgsp1_rep	CDS	4707515	4708378	.	+	0	Parent=Os05t0178900-02
Chr05	irgsp1_rep	three_prime_UTR	4708379	4708657	.	+	.	Parent=Os05t0178900-02
Chr05	irgsp1_rep	mRNA	4705828	4708374	.	-	.	ID=Os05t0178950-00;Name=Os05t0178950-00;Locus_id=Os05g0178950;Note=Hypothetical protein.;Transcript_evidence=tplb0040d24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0178950-00
Chr05	irgsp1_rep	five_prime_UTR	4707881	4708374	.	-	.	Parent=Os05t0178950-00
Chr05	irgsp1_rep	five_prime_UTR	4707449	4707779	.	-	.	Parent=Os05t0178950-00
Chr05	irgsp1_rep	five_prime_UTR	4706808	4707115	.	-	.	Parent=Os05t0178950-00
Chr05	irgsp1_rep	five_prime_UTR	4706093	4706123	.	-	.	Parent=Os05t0178950-00
Chr05	irgsp1_rep	CDS	4705844	4706092	.	-	0	Parent=Os05t0178950-00
Chr05	irgsp1_rep	three_prime_UTR	4705828	4705843	.	-	.	Parent=Os05t0178950-00
Chr05	irgsp1_rep	mRNA	4710637	4715385	.	+	.	ID=Os05t0179000-01;Name=Os05t0179000-01;Locus_id=Os05g0179000;Oryzabase Gene Symbol Synonym(s)=OsRFPH2-5%2C DLN133%2C OsDLN133;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPH2-5%2C RING-H2 protein 5%2C DLN repressor 133%2C DLN motif protein 133;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK071804 (DDBJ%2C Best hit);ORF_evidence=B6TV66 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J023110J02;Oryzabase=11766;Expression=AK071804;TENOR=Os05t0179000-01;KEGG=Os05t0179000-01
Chr05	irgsp1_rep	five_prime_UTR	4710637	4711041	.	+	.	Parent=Os05t0179000-01
Chr05	irgsp1_rep	five_prime_UTR	4713386	4713437	.	+	.	Parent=Os05t0179000-01
Chr05	irgsp1_rep	CDS	4713438	4714030	.	+	0	Parent=Os05t0179000-01
Chr05	irgsp1_rep	CDS	4714380	4714505	.	+	1	Parent=Os05t0179000-01
Chr05	irgsp1_rep	CDS	4714594	4714870	.	+	1	Parent=Os05t0179000-01
Chr05	irgsp1_rep	CDS	4714973	4715200	.	+	0	Parent=Os05t0179000-01
Chr05	irgsp1_rep	three_prime_UTR	4715201	4715385	.	+	.	Parent=Os05t0179000-01
Chr05	irgsp1_rep	mRNA	4713637	4715177	.	-	.	ID=Os05t0179050-00;Name=Os05t0179050-00;Locus_id=Os05g0179050;Note=Hypothetical protein.;Transcript_evidence=tplb0030e06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0179050-00
Chr05	irgsp1_rep	five_prime_UTR	4715140	4715177	.	-	.	Parent=Os05t0179050-00
Chr05	irgsp1_rep	CDS	4714973	4715139	.	-	0	Parent=Os05t0179050-00
Chr05	irgsp1_rep	CDS	4714630	4714870	.	-	1	Parent=Os05t0179050-00
Chr05	irgsp1_rep	three_prime_UTR	4714549	4714629	.	-	.	Parent=Os05t0179050-00
Chr05	irgsp1_rep	three_prime_UTR	4714287	4714474	.	-	.	Parent=Os05t0179050-00
Chr05	irgsp1_rep	three_prime_UTR	4713637	4713942	.	-	.	Parent=Os05t0179050-00
Chr05	irgsp1_rep	mRNA	4722809	4723431	.	+	.	ID=Os05t0179100-01;Name=Os05t0179100-01;Locus_id=Os05g0179100;Note=DVL family protein.;Transcript_evidence=AK241648 (DDBJ%2C Best hit);ORF_evidence=NP_001078384.1 (RefSeq);InterPro=DVL (IPR012552);NIAS_FLcDNA=J065190K23;TENOR=Os05t0179100-01;KEGG=Os05t0179100-01
Chr05	irgsp1_rep	five_prime_UTR	4722809	4722894	.	+	.	Parent=Os05t0179100-01
Chr05	irgsp1_rep	CDS	4722895	4723179	.	+	0	Parent=Os05t0179100-01
Chr05	irgsp1_rep	three_prime_UTR	4723180	4723431	.	+	.	Parent=Os05t0179100-01
Chr05	irgsp1_rep	mRNA	4735060	4737046	.	-	.	ID=Os05t0179300-01;Name=Os05t0179300-01;Locus_id=Os05g0179300;CGSNL Gene Symbol=AT7;CGSNL Gene Name=ACYLTRANSFERASE 7;Oryzabase Gene Symbol Synonym(s)=OsAT7%2C OsAt7;Oryzabase Gene Name Synonym(s)=acyltransferase 7;Note=Transferase family protein.;Transcript_evidence=AK100028 (DDBJ%2C Best hit);ORF_evidence=B6TZV1 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J013147B02;Oryzabase=11739;Expression=AK100028;TENOR=Os05t0179300-01;KEGG=Os05t0179300-01
Chr05	irgsp1_rep	five_prime_UTR	4736961	4737046	.	-	.	Parent=Os05t0179300-01
Chr05	irgsp1_rep	CDS	4736484	4736960	.	-	0	Parent=Os05t0179300-01
Chr05	irgsp1_rep	CDS	4735549	4736391	.	-	0	Parent=Os05t0179300-01
Chr05	irgsp1_rep	three_prime_UTR	4735060	4735548	.	-	.	Parent=Os05t0179300-01
Chr05	irgsp1_rep	mRNA	4735550	4736972	.	+	.	ID=Os05t0179450-00;Name=Os05t0179450-00;Locus_id=Os05g0179450;Note=Hypothetical protein.;Transcript_evidence=tplb0035p13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0179450-00
Chr05	irgsp1_rep	five_prime_UTR	4735550	4735551	.	+	.	Parent=Os05t0179450-00
Chr05	irgsp1_rep	CDS	4735552	4736386	.	+	0	Parent=Os05t0179450-00
Chr05	irgsp1_rep	CDS	4736478	4736500	.	+	2	Parent=Os05t0179450-00
Chr05	irgsp1_rep	three_prime_UTR	4736501	4736520	.	+	.	Parent=Os05t0179450-00
Chr05	irgsp1_rep	three_prime_UTR	4736775	4736972	.	+	.	Parent=Os05t0179450-00
Chr05	irgsp1_rep	mRNA	4786594	4789646	.	+	.	ID=Os05t0179800-01;Name=Os05t0179800-01;Locus_id=Os05g0179800;Note=Similar to BRI1-KD interacting protein 128 (Fragment).;Transcript_evidence=AK101047 (DDBJ%2C Best hit);ORF_evidence=Q761Y6 (UniProt);NIAS_FLcDNA=J033007J22;Expression=AK101047;TENOR=Os05t0179800-01;KEGG=Os05t0179800-01
Chr05	irgsp1_rep	five_prime_UTR	4786594	4786817	.	+	.	Parent=Os05t0179800-01
Chr05	irgsp1_rep	CDS	4786818	4787138	.	+	0	Parent=Os05t0179800-01
Chr05	irgsp1_rep	CDS	4788556	4788805	.	+	0	Parent=Os05t0179800-01
Chr05	irgsp1_rep	CDS	4789106	4789470	.	+	2	Parent=Os05t0179800-01
Chr05	irgsp1_rep	three_prime_UTR	4789471	4789646	.	+	.	Parent=Os05t0179800-01
Chr05	irgsp1_rep	mRNA	4789212	4789658	.	+	.	ID=Os05t0179800-02;Name=Os05t0179800-02;Locus_id=Os05g0179800;Note=Similar to early fruit mRNA.;Transcript_evidence=AK063809 (DDBJ%2C Best hit);ORF_evidence=B6TAC1 (UniProt);NIAS_FLcDNA=001-121-G08;Expression=AK063809;TENOR=Os05t0179800-02;KEGG=Os05t0179800-02
Chr05	irgsp1_rep	five_prime_UTR	4789212	4789212	.	+	.	Parent=Os05t0179800-02
Chr05	irgsp1_rep	CDS	4789213	4789470	.	+	0	Parent=Os05t0179800-02
Chr05	irgsp1_rep	three_prime_UTR	4789471	4789658	.	+	.	Parent=Os05t0179800-02
Chr05	irgsp1_rep	mRNA	4790965	4791909	.	-	.	ID=Os05t0179900-00;Name=Os05t0179900-00;Locus_id=Os05g0179900;Note=Conserved hypothetical protein.;Transcript_evidence=BT084151 (DDBJ);ORF_evidence=NP_001174244.1 (RefSeq);TENOR=Os05t0179900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	4790965	4791909	.	-	0	Parent=Os05t0179900-00
Chr05	irgsp1_rep	mRNA	4799225	4800863	.	-	.	ID=Os05t0179950-00;Name=Os05t0179950-00;Locus_id=Os05g0179950;Note=Similar to cDNA%2C clone: J100088D24%2C full insert sequence.;Transcript_evidence=AK375575 (DDBJ);ORF_evidence=Q5KQK5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os05t0179950-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	4799280	4800863	.	-	0	Parent=Os05t0179950-00
Chr05	irgsp1_rep	three_prime_UTR	4799225	4799279	.	-	.	Parent=Os05t0179950-00
Chr05	irgsp1_rep	mRNA	4813366	4815407	.	-	.	ID=Os05t0180300-01;Name=Os05t0180300-01;Locus_id=Os05g0180300;Note=Leucine-rich repeat%2C plant specific containing protein.;Transcript_evidence=AK242969 (DDBJ%2C Best hit);ORF_evidence=NP_001150408.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=J090091F22;TENOR=Os05t0180300-01;KEGG=Os05t0180300-01
Chr05	irgsp1_rep	five_prime_UTR	4815230	4815407	.	-	.	Parent=Os05t0180300-01
Chr05	irgsp1_rep	CDS	4813985	4815229	.	-	0	Parent=Os05t0180300-01
Chr05	irgsp1_rep	three_prime_UTR	4813366	4813984	.	-	.	Parent=Os05t0180300-01
Chr05	irgsp1_rep	mRNA	4831845	4835649	.	-	.	ID=Os05t0180400-01;Name=Os05t0180400-01;Locus_id=Os05g0180400;Note=Ribosomal protein L5 domain containing protein.;Transcript_evidence=AK240924 (DDBJ%2C Best hit);ORF_evidence=Q5KQK3 (UniProt);NIAS_FLcDNA=J065039N21;TENOR=Os05t0180400-01;KEGG=Os05t0180400-01
Chr05	irgsp1_rep	five_prime_UTR	4835538	4835649	.	-	.	Parent=Os05t0180400-01
Chr05	irgsp1_rep	CDS	4835282	4835537	.	-	0	Parent=Os05t0180400-01
Chr05	irgsp1_rep	CDS	4834542	4834747	.	-	2	Parent=Os05t0180400-01
Chr05	irgsp1_rep	CDS	4832039	4833808	.	-	0	Parent=Os05t0180400-01
Chr05	irgsp1_rep	three_prime_UTR	4831845	4832038	.	-	.	Parent=Os05t0180400-01
Chr05	irgsp1_rep	mRNA	4837556	4839806	.	-	.	ID=Os05t0180500-01;Name=Os05t0180500-01;Locus_id=Os05g0180500;Note=Hypothetical conserved gene.;Transcript_evidence=AK287445 (DDBJ%2C Best hit);ORF_evidence=Q5KQK2 (UniProt);InterPro=Protein of unknown function DUF581 (IPR007650);NIAS_FLcDNA=J043016J15;TENOR=Os05t0180500-01;KEGG=Os05t0180500-01
Chr05	irgsp1_rep	five_prime_UTR	4839686	4839806	.	-	.	Parent=Os05t0180500-01
Chr05	irgsp1_rep	five_prime_UTR	4839381	4839398	.	-	.	Parent=Os05t0180500-01
Chr05	irgsp1_rep	CDS	4838581	4839380	.	-	0	Parent=Os05t0180500-01
Chr05	irgsp1_rep	CDS	4837972	4838155	.	-	1	Parent=Os05t0180500-01
Chr05	irgsp1_rep	three_prime_UTR	4837556	4837971	.	-	.	Parent=Os05t0180500-01
Chr05	irgsp1_rep	mRNA	4859051	4865610	.	-	.	ID=Os05t0180600-01;Name=Os05t0180600-01;Locus_id=Os05g0180600;Note=Similar to Phosphatidylinositol 3-kinase%2C root isoform.;Transcript_evidence=AK111532 (DDBJ%2C Best hit);ORF_evidence=P42347 (UniProt);GO=Biological Process: phosphatidylinositol phosphorylation (GO:0046854),Biological Process: phosphatidylinositol-mediated signaling (GO:0048015),Cellular Component: phosphatidylinositol 3-kinase complex (GO:0005942),Molecular Function: inositol or phosphatidylinositol kinase activity (GO:0004428),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515),Molecular Function: 1-phosphatidylinositol-3-kinase activity (GO:0016303);InterPro=Phosphoinositide 3-kinase%2C accessory (PIK) domain (IPR001263),Phosphoinositide 3-kinase%2C C2 (IPR002420),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),Phosphatidylinositol Kinase (IPR015433),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013031M08;TENOR=Os05t0180600-01
Chr05	irgsp1_rep	five_prime_UTR	4865302	4865610	.	-	.	Parent=Os05t0180600-01
Chr05	irgsp1_rep	CDS	4865184	4865301	.	-	0	Parent=Os05t0180600-01
Chr05	irgsp1_rep	CDS	4863274	4863373	.	-	2	Parent=Os05t0180600-01
Chr05	irgsp1_rep	CDS	4863091	4863187	.	-	1	Parent=Os05t0180600-01
Chr05	irgsp1_rep	CDS	4861964	4862122	.	-	0	Parent=Os05t0180600-01
Chr05	irgsp1_rep	CDS	4861517	4861723	.	-	0	Parent=Os05t0180600-01
Chr05	irgsp1_rep	CDS	4860854	4861032	.	-	0	Parent=Os05t0180600-01
Chr05	irgsp1_rep	CDS	4860423	4860570	.	-	1	Parent=Os05t0180600-01
Chr05	irgsp1_rep	CDS	4859253	4859348	.	-	0	Parent=Os05t0180600-01
Chr05	irgsp1_rep	CDS	4859051	4859093	.	-	0	Parent=Os05t0180600-01
Chr05	irgsp1_rep	mRNA	4854217	4865599	.	-	.	ID=Os05t0180600-02;Name=Os05t0180600-02;Locus_id=Os05g0180600;Note=Similar to Phosphatidylinositol 3-kinase%2C root isoform (EC 2.7.1.137) (PI3- kinase) (PtdIns-3-kinase) (PI3K) (SPI3K-5).;Transcript_evidence=AK111613 (DDBJ%2C Best hit);ORF_evidence=P42347 (UniProt);GO=Biological Process: phosphatidylinositol phosphorylation (GO:0046854),Biological Process: phosphatidylinositol-mediated signaling (GO:0048015),Cellular Component: phosphatidylinositol 3-kinase complex (GO:0005942),Molecular Function: inositol or phosphatidylinositol kinase activity (GO:0004428),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515),Molecular Function: 1-phosphatidylinositol-3-kinase activity (GO:0016303),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Phosphatidylinositol 3-/4-kinase%2C catalytic (IPR000403),Phosphoinositide 3-kinase%2C accessory (PIK) domain (IPR001263),Phosphoinositide 3-kinase%2C C2 (IPR002420),Phosphatidylinositol 3-kinase%2C Vps34 type (IPR008290),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),Protein kinase-like domain (IPR011009),Phosphatidylinositol Kinase (IPR015433),Armadillo-type fold (IPR016024),Phosphatidylinositol 3/4-kinase%2C conserved site (IPR018936);NIAS_FLcDNA=J013099I11;Expression=AK111613;TENOR=Os05t0180600-02;KEGG=Os05t0180600-02 (EC:2.7.1.137)
Chr05	irgsp1_rep	five_prime_UTR	4865302	4865599	.	-	.	Parent=Os05t0180600-02
Chr05	irgsp1_rep	CDS	4865184	4865301	.	-	0	Parent=Os05t0180600-02
Chr05	irgsp1_rep	CDS	4863274	4863373	.	-	2	Parent=Os05t0180600-02
Chr05	irgsp1_rep	CDS	4863091	4863187	.	-	1	Parent=Os05t0180600-02
Chr05	irgsp1_rep	CDS	4861964	4862122	.	-	0	Parent=Os05t0180600-02
Chr05	irgsp1_rep	CDS	4861517	4861723	.	-	0	Parent=Os05t0180600-02
Chr05	irgsp1_rep	CDS	4860854	4861032	.	-	0	Parent=Os05t0180600-02
Chr05	irgsp1_rep	CDS	4860423	4860570	.	-	1	Parent=Os05t0180600-02
Chr05	irgsp1_rep	CDS	4859253	4859348	.	-	0	Parent=Os05t0180600-02
Chr05	irgsp1_rep	CDS	4858958	4859093	.	-	0	Parent=Os05t0180600-02
Chr05	irgsp1_rep	CDS	4858153	4858274	.	-	2	Parent=Os05t0180600-02
Chr05	irgsp1_rep	CDS	4857873	4858064	.	-	0	Parent=Os05t0180600-02
Chr05	irgsp1_rep	CDS	4857577	4857747	.	-	0	Parent=Os05t0180600-02
Chr05	irgsp1_rep	CDS	4856090	4856227	.	-	0	Parent=Os05t0180600-02
Chr05	irgsp1_rep	CDS	4855791	4855945	.	-	0	Parent=Os05t0180600-02
Chr05	irgsp1_rep	CDS	4855046	4855189	.	-	1	Parent=Os05t0180600-02
Chr05	irgsp1_rep	CDS	4854826	4854970	.	-	1	Parent=Os05t0180600-02
Chr05	irgsp1_rep	CDS	4854537	4854674	.	-	0	Parent=Os05t0180600-02
Chr05	irgsp1_rep	three_prime_UTR	4854217	4854536	.	-	.	Parent=Os05t0180600-02
Chr05	irgsp1_rep	mRNA	4868041	4869523	.	+	.	ID=Os05t0180700-01;Name=Os05t0180700-01;Locus_id=Os05g0180700;Note=Conserved hypothetical protein.;Transcript_evidence=AK243373 (DDBJ%2C Best hit);ORF_evidence=NP_001054811.1 (RefSeq);NIAS_FLcDNA=J100062K04;TENOR=Os05t0180700-01;KEGG=Os05t0180700-01
Chr05	irgsp1_rep	five_prime_UTR	4868041	4868086	.	+	.	Parent=Os05t0180700-01
Chr05	irgsp1_rep	CDS	4868087	4868207	.	+	0	Parent=Os05t0180700-01
Chr05	irgsp1_rep	CDS	4868972	4869186	.	+	2	Parent=Os05t0180700-01
Chr05	irgsp1_rep	three_prime_UTR	4869187	4869523	.	+	.	Parent=Os05t0180700-01
Chr05	irgsp1_rep	mRNA	4877623	4883589	.	+	.	ID=Os05t0181000-01;Name=Os05t0181000-01;Locus_id=Os05g0181000;Note=Heat shock protein Hsp70 family protein.;Transcript_evidence=AK122040 (DDBJ%2C Best hit);ORF_evidence=B6U237 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Heat shock protein Hsp70 (IPR001023),Heat shock protein 70 (IPR013126);NIAS_FLcDNA=J033113E02;Expression=AK122040;TENOR=Os05t0181000-01;KEGG=Os05t0181000-01
Chr05	irgsp1_rep	five_prime_UTR	4877623	4877804	.	+	.	Parent=Os05t0181000-01
Chr05	irgsp1_rep	CDS	4877805	4878974	.	+	0	Parent=Os05t0181000-01
Chr05	irgsp1_rep	CDS	4879831	4880040	.	+	0	Parent=Os05t0181000-01
Chr05	irgsp1_rep	CDS	4880148	4880243	.	+	0	Parent=Os05t0181000-01
Chr05	irgsp1_rep	CDS	4880329	4880547	.	+	0	Parent=Os05t0181000-01
Chr05	irgsp1_rep	CDS	4880920	4881114	.	+	0	Parent=Os05t0181000-01
Chr05	irgsp1_rep	CDS	4881185	4881331	.	+	0	Parent=Os05t0181000-01
Chr05	irgsp1_rep	CDS	4881431	4881580	.	+	0	Parent=Os05t0181000-01
Chr05	irgsp1_rep	CDS	4882734	4882864	.	+	0	Parent=Os05t0181000-01
Chr05	irgsp1_rep	CDS	4882953	4883196	.	+	1	Parent=Os05t0181000-01
Chr05	irgsp1_rep	three_prime_UTR	4883197	4883589	.	+	.	Parent=Os05t0181000-01
Chr05	irgsp1_rep	mRNA	4877800	4883171	.	-	.	ID=Os05t0181100-00;Name=Os05t0181100-00;Locus_id=Os05g0181100;Note=Glutamate dehydrogenase%2C NAD-specific domain containing protein.;Transcript_evidence=tplb0021a19 (Wheat FLcDNA);ORF_evidence=longestORF;InterPro=Glutamate dehydrogenase%2C NAD-specific (IPR019651);TENOR=Os05t0181100-00
Chr05	irgsp1_rep	five_prime_UTR	4882941	4883171	.	-	.	Parent=Os05t0181100-00
Chr05	irgsp1_rep	five_prime_UTR	4882741	4882856	.	-	.	Parent=Os05t0181100-00
Chr05	irgsp1_rep	five_prime_UTR	4881423	4881587	.	-	.	Parent=Os05t0181100-00
Chr05	irgsp1_rep	five_prime_UTR	4881183	4881322	.	-	.	Parent=Os05t0181100-00
Chr05	irgsp1_rep	five_prime_UTR	4880918	4881112	.	-	.	Parent=Os05t0181100-00
Chr05	irgsp1_rep	five_prime_UTR	4880328	4880545	.	-	.	Parent=Os05t0181100-00
Chr05	irgsp1_rep	five_prime_UTR	4880139	4880245	.	-	.	Parent=Os05t0181100-00
Chr05	irgsp1_rep	five_prime_UTR	4879824	4880030	.	-	.	Parent=Os05t0181100-00
Chr05	irgsp1_rep	five_prime_UTR	4878474	4878967	.	-	.	Parent=Os05t0181100-00
Chr05	irgsp1_rep	CDS	4877800	4878473	.	-	0	Parent=Os05t0181100-00
Chr05	irgsp1_rep	mRNA	4885421	4887144	.	+	.	ID=Os05t0181200-01;Name=Os05t0181200-01;Locus_id=Os05g0181200;CGSNL Gene Symbol=CYP96D2;CGSNL Gene Name=P-450 96D2;Oryzabase Gene Symbol Synonym(s)=OsCYP96D2;Oryzabase Gene Name Synonym(s)=CytoChrome P450 96D2;Note=Similar to PhytoChrome P450-like protein.;Transcript_evidence=AK105519 (DDBJ%2C Best hit);ORF_evidence=B6THI2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=001-127-F08;Oryzabase=19317;Expression=AK105519;TENOR=Os05t0181200-01;KEGG=Os05t0181200-01
Chr05	irgsp1_rep	five_prime_UTR	4885421	4885421	.	+	.	Parent=Os05t0181200-01
Chr05	irgsp1_rep	CDS	4885422	4886945	.	+	0	Parent=Os05t0181200-01
Chr05	irgsp1_rep	three_prime_UTR	4886946	4887144	.	+	.	Parent=Os05t0181200-01
Chr05	irgsp1_rep	mRNA	4887344	4890246	.	-	.	ID=Os05t0181250-01;Name=Os05t0181250-01;Locus_id=Os05g0181250;Note=Similar to predicted protein.;Transcript_evidence=AK240765 (DDBJ%2C Best hit);ORF_evidence=NP_001172209.1 (RefSeq);NIAS_FLcDNA=J053056P09;TENOR=Os05t0181250-01;KEGG=Os05t0181250-01
Chr05	irgsp1_rep	five_prime_UTR	4889989	4890246	.	-	.	Parent=Os05t0181250-01
Chr05	irgsp1_rep	five_prime_UTR	4888153	4888790	.	-	.	Parent=Os05t0181250-01
Chr05	irgsp1_rep	CDS	4887961	4888152	.	-	0	Parent=Os05t0181250-01
Chr05	irgsp1_rep	three_prime_UTR	4887344	4887960	.	-	.	Parent=Os05t0181250-01
Chr05	irgsp1_rep	mRNA	4895311	4895815	.	+	.	ID=Os05t0181300-01;Name=Os05t0181300-01;Locus_id=Os05g0181300;Note=Conserved hypothetical protein.;Transcript_evidence=AK062607 (DDBJ%2C Best hit);ORF_evidence=Q5KQJ7 (UniProt);NIAS_FLcDNA=001-105-A04;Expression=AK062607;TENOR=Os05t0181300-01;KEGG=Os05t0181300-01
Chr05	irgsp1_rep	five_prime_UTR	4895311	4895311	.	+	.	Parent=Os05t0181300-01
Chr05	irgsp1_rep	CDS	4895312	4895629	.	+	0	Parent=Os05t0181300-01
Chr05	irgsp1_rep	three_prime_UTR	4895630	4895815	.	+	.	Parent=Os05t0181300-01
Chr05	irgsp1_rep	mRNA	4916956	4917691	.	-	.	ID=Os05t0181650-00;Name=Os05t0181650-00;Locus_id=Os05g0181650;Note=Hypothetical gene.;Transcript_evidence=CT836464 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os05t0181650-00;KEGG=Os05t0181650-00
Chr05	irgsp1_rep	five_prime_UTR	4917315	4917691	.	-	.	Parent=Os05t0181650-00
Chr05	irgsp1_rep	CDS	4916982	4917314	.	-	0	Parent=Os05t0181650-00
Chr05	irgsp1_rep	three_prime_UTR	4916956	4916981	.	-	.	Parent=Os05t0181650-00
Chr05	irgsp1_rep	mRNA	4926710	4927411	.	+	.	ID=Os05t0181700-01;Name=Os05t0181700-01;Locus_id=Os05g0181700;Note=Conserved hypothetical protein.;Transcript_evidence=AK066089 (DDBJ%2C Best hit);ORF_evidence=Q5KQJ7 (UniProt);NIAS_FLcDNA=J013054O21;Expression=AK066089;TENOR=Os05t0181700-01;KEGG=Os05t0181700-01
Chr05	irgsp1_rep	five_prime_UTR	4926710	4926800	.	+	.	Parent=Os05t0181700-01
Chr05	irgsp1_rep	CDS	4926801	4927325	.	+	0	Parent=Os05t0181700-01
Chr05	irgsp1_rep	three_prime_UTR	4927326	4927411	.	+	.	Parent=Os05t0181700-01
Chr05	irgsp1_rep	mRNA	4935434	4935797	.	+	.	ID=Os05t0181902-00;Name=Os05t0181902-00;Locus_id=Os05g0181902;Note=Similar to ribosomal protein S19.;Transcript_evidence=DQ245870 (DDBJ);ORF_evidence=YP_003208274.1 (RefSeq);TENOR=Os05t0181902-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	4935434	4935577	.	+	0	Parent=Os05t0181902-00
Chr05	irgsp1_rep	three_prime_UTR	4935578	4935797	.	+	.	Parent=Os05t0181902-00
Chr05	irgsp1_rep	mRNA	4936626	4937468	.	-	.	ID=Os05t0182000-01;Name=Os05t0182000-01;Locus_id=Os05g0182000;Note=Similar to late embryogenesis abundant protein.;Transcript_evidence=AK288080 (DDBJ%2C Best hit);ORF_evidence=NP_001150813.1 (RefSeq);NIAS_FLcDNA=J075166J19;TENOR=Os05t0182000-01;KEGG=Os05t0182000-01
Chr05	irgsp1_rep	five_prime_UTR	4937385	4937468	.	-	.	Parent=Os05t0182000-01
Chr05	irgsp1_rep	CDS	4936962	4937384	.	-	0	Parent=Os05t0182000-01
Chr05	irgsp1_rep	three_prime_UTR	4936626	4936961	.	-	.	Parent=Os05t0182000-01
Chr05	irgsp1_rep	mRNA	4938322	4940925	.	-	.	ID=Os05t0182100-01;Name=Os05t0182100-01;Locus_id=Os05g0182100;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK071095 (DDBJ%2C Best hit),AK106020 (DDBJ%2C Best hit);ORF_evidence=B9FI84 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026);NIAS_FLcDNA=J023079N14,001-206-C01;TENOR=Os05t0182100-01
Chr05	irgsp1_rep	five_prime_UTR	4940865	4940925	.	-	.	Parent=Os05t0182100-01
Chr05	irgsp1_rep	CDS	4940088	4940864	.	-	0	Parent=Os05t0182100-01
Chr05	irgsp1_rep	CDS	4938965	4939111	.	-	0	Parent=Os05t0182100-01
Chr05	irgsp1_rep	CDS	4938816	4938896	.	-	0	Parent=Os05t0182100-01
Chr05	irgsp1_rep	CDS	4938529	4938714	.	-	0	Parent=Os05t0182100-01
Chr05	irgsp1_rep	three_prime_UTR	4938322	4938528	.	-	.	Parent=Os05t0182100-01
Chr05	irgsp1_rep	mRNA	4938388	4940887	.	+	.	ID=Os05t0182150-00;Name=Os05t0182150-00;Locus_id=Os05g0182150;Note=Hypothetical protein.;Transcript_evidence=tplb0032f08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0182150-00
Chr05	irgsp1_rep	five_prime_UTR	4938388	4938702	.	+	.	Parent=Os05t0182150-00
Chr05	irgsp1_rep	five_prime_UTR	4938811	4938889	.	+	.	Parent=Os05t0182150-00
Chr05	irgsp1_rep	five_prime_UTR	4938959	4938998	.	+	.	Parent=Os05t0182150-00
Chr05	irgsp1_rep	CDS	4938999	4939107	.	+	0	Parent=Os05t0182150-00
Chr05	irgsp1_rep	CDS	4940083	4940801	.	+	2	Parent=Os05t0182150-00
Chr05	irgsp1_rep	three_prime_UTR	4940802	4940887	.	+	.	Parent=Os05t0182150-00
Chr05	irgsp1_rep	mRNA	4947693	4951874	.	-	.	ID=Os05t0182201-01;Name=Os05t0182201-01;Locus_id=Os05g0182201;Note=Similar to bifunctional protein tilS/hprT.;Transcript_evidence=AK288332 (DDBJ%2C Best hit);ORF_evidence=NP_001147566.1 (RefSeq);GO=Biological Process: purine ribonucleoside salvage (GO:0006166),Biological Process: nucleoside metabolic process (GO:0009116),Cellular Component: cytoplasm (GO:0005737),Molecular Function: hypoxanthine phosphoribosyltransferase activity (GO:0004422);InterPro=Phosphoribosyltransferase (IPR000836),Hypoxanthine phosphoribosyl transferase (IPR005904);NIAS_FLcDNA=J090022K24;TENOR=Os05t0182201-01;KEGG=Os05t0182201-01 (EC:2.4.2.8)
Chr05	irgsp1_rep	five_prime_UTR	4951867	4951874	.	-	.	Parent=Os05t0182201-01
Chr05	irgsp1_rep	CDS	4951360	4951866	.	-	0	Parent=Os05t0182201-01
Chr05	irgsp1_rep	CDS	4948339	4948503	.	-	0	Parent=Os05t0182201-01
Chr05	irgsp1_rep	CDS	4948045	4948158	.	-	0	Parent=Os05t0182201-01
Chr05	irgsp1_rep	three_prime_UTR	4947693	4948044	.	-	.	Parent=Os05t0182201-01
Chr05	irgsp1_rep	mRNA	4958322	4964932	.	+	.	ID=Os05t0182500-01;Name=Os05t0182500-01;Locus_id=Os05g0182500;CGSNL Gene Symbol=UBC8;CGSNL Gene Name=UBIQUITIN-CONJUGATING ENZYME 8;Oryzabase Gene Symbol Synonym(s)=OsUBC8;Oryzabase Gene Name Synonym(s)=Ubiquitin-conjugating enzyme 8;Note=Similar to Ubiquitin carrier protein.;Transcript_evidence=AK111549 (DDBJ%2C Best hit);ORF_evidence=B8AYY8 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135);NIAS_FLcDNA=J013057C14;Oryzabase=19556;Expression=AK111549;TENOR=Os05t0182500-01;KEGG=Os05t0182500-01 (EC:6.3.2.19)
Chr05	irgsp1_rep	five_prime_UTR	4958322	4958554	.	+	.	Parent=Os05t0182500-01
Chr05	irgsp1_rep	five_prime_UTR	4959373	4959379	.	+	.	Parent=Os05t0182500-01
Chr05	irgsp1_rep	CDS	4959380	4959504	.	+	0	Parent=Os05t0182500-01
Chr05	irgsp1_rep	CDS	4959596	4959621	.	+	1	Parent=Os05t0182500-01
Chr05	irgsp1_rep	CDS	4961608	4961819	.	+	2	Parent=Os05t0182500-01
Chr05	irgsp1_rep	three_prime_UTR	4961820	4963751	.	+	.	Parent=Os05t0182500-01
Chr05	irgsp1_rep	three_prime_UTR	4964550	4964932	.	+	.	Parent=Os05t0182500-01
Chr05	irgsp1_rep	mRNA	4958343	4964946	.	+	.	ID=Os05t0182500-02;Name=Os05t0182500-02;Locus_id=Os05g0182500;CGSNL Gene Symbol=UBC8;CGSNL Gene Name=UBIQUITIN-CONJUGATING ENZYME 8;Oryzabase Gene Symbol Synonym(s)=OsUBC8;Oryzabase Gene Name Synonym(s)=Ubiquitin-conjugating enzyme 8;Note=Rad6 (Ubiquitin carrier protein).;Transcript_evidence=AK112003 (DDBJ%2C Best hit);ORF_evidence=B8AYY8 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135),Ubiquitin-conjugating enzyme%2C active site (IPR023313);NIAS_FLcDNA=001-035-F01;Oryzabase=19556;Expression=AK112003;TENOR=Os05t0182500-02;KEGG=Os05t0182500-02 (EC:6.3.2.19)
Chr05	irgsp1_rep	five_prime_UTR	4958343	4958554	.	+	.	Parent=Os05t0182500-02
Chr05	irgsp1_rep	five_prime_UTR	4959373	4959379	.	+	.	Parent=Os05t0182500-02
Chr05	irgsp1_rep	CDS	4959380	4959504	.	+	0	Parent=Os05t0182500-02
Chr05	irgsp1_rep	CDS	4959596	4959621	.	+	1	Parent=Os05t0182500-02
Chr05	irgsp1_rep	CDS	4961608	4961697	.	+	2	Parent=Os05t0182500-02
Chr05	irgsp1_rep	CDS	4963663	4963751	.	+	2	Parent=Os05t0182500-02
Chr05	irgsp1_rep	CDS	4964550	4964678	.	+	0	Parent=Os05t0182500-02
Chr05	irgsp1_rep	three_prime_UTR	4964679	4964946	.	+	.	Parent=Os05t0182500-02
Chr05	irgsp1_rep	mRNA	4959380	4964676	.	-	.	ID=Os05t0182550-00;Name=Os05t0182550-00;Locus_id=Os05g0182550;Note=Hypothetical gene.;Transcript_evidence=BT016345 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0182550-00;KEGG=Os05t0182550-00
Chr05	irgsp1_rep	five_prime_UTR	4964521	4964676	.	-	.	Parent=Os05t0182550-00
Chr05	irgsp1_rep	five_prime_UTR	4963661	4963728	.	-	.	Parent=Os05t0182550-00
Chr05	irgsp1_rep	five_prime_UTR	4961691	4961691	.	-	.	Parent=Os05t0182550-00
Chr05	irgsp1_rep	CDS	4961575	4961690	.	-	0	Parent=Os05t0182550-00
Chr05	irgsp1_rep	CDS	4959380	4959491	.	-	1	Parent=Os05t0182550-00
Chr05	irgsp1_rep	mRNA	4965425	4971029	.	+	.	ID=Os05t0182600-01;Name=Os05t0182600-01;Locus_id=Os05g0182600;Note=Similar to SSRP1 protein.;Transcript_evidence=AK102592 (DDBJ%2C Best hit);ORF_evidence=Q65WY8 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=High mobility group%2C HMG1/HMG2 (IPR000910),Structure-specific recognition protein (IPR000969),High mobility group%2C superfamily (IPR009071);NIAS_FLcDNA=J033098G02;Expression=AK102592;TENOR=Os05t0182600-01;KEGG=Os05t0182600-01
Chr05	irgsp1_rep	five_prime_UTR	4965425	4965654	.	+	.	Parent=Os05t0182600-01
Chr05	irgsp1_rep	CDS	4965655	4965708	.	+	0	Parent=Os05t0182600-01
Chr05	irgsp1_rep	CDS	4966608	4966793	.	+	0	Parent=Os05t0182600-01
Chr05	irgsp1_rep	CDS	4966898	4967003	.	+	0	Parent=Os05t0182600-01
Chr05	irgsp1_rep	CDS	4967095	4967231	.	+	2	Parent=Os05t0182600-01
Chr05	irgsp1_rep	CDS	4967707	4967790	.	+	0	Parent=Os05t0182600-01
Chr05	irgsp1_rep	CDS	4967875	4967966	.	+	0	Parent=Os05t0182600-01
Chr05	irgsp1_rep	CDS	4968076	4968184	.	+	1	Parent=Os05t0182600-01
Chr05	irgsp1_rep	CDS	4968272	4968358	.	+	0	Parent=Os05t0182600-01
Chr05	irgsp1_rep	CDS	4968455	4968547	.	+	0	Parent=Os05t0182600-01
Chr05	irgsp1_rep	CDS	4969102	4969299	.	+	0	Parent=Os05t0182600-01
Chr05	irgsp1_rep	CDS	4969377	4969528	.	+	0	Parent=Os05t0182600-01
Chr05	irgsp1_rep	CDS	4969628	4969778	.	+	1	Parent=Os05t0182600-01
Chr05	irgsp1_rep	CDS	4969892	4969990	.	+	0	Parent=Os05t0182600-01
Chr05	irgsp1_rep	CDS	4970080	4970253	.	+	0	Parent=Os05t0182600-01
Chr05	irgsp1_rep	CDS	4970398	4970476	.	+	0	Parent=Os05t0182600-01
Chr05	irgsp1_rep	CDS	4970576	4970697	.	+	2	Parent=Os05t0182600-01
Chr05	irgsp1_rep	three_prime_UTR	4970698	4971029	.	+	.	Parent=Os05t0182600-01
Chr05	irgsp1_rep	mRNA	4970197	4970733	.	-	.	ID=Os05t0182650-01;Name=Os05t0182650-01;Locus_id=Os05g0182650;Note=Conserved hypothetical protein.;Transcript_evidence=AK240762 (DDBJ%2C Best hit);ORF_evidence=NP_001174249.1 (RefSeq);NIAS_FLcDNA=J053046M21;TENOR=Os05t0182650-01;KEGG=Os05t0182650-01
Chr05	irgsp1_rep	five_prime_UTR	4970720	4970733	.	-	.	Parent=Os05t0182650-01
Chr05	irgsp1_rep	CDS	4970426	4970719	.	-	0	Parent=Os05t0182650-01
Chr05	irgsp1_rep	three_prime_UTR	4970197	4970425	.	-	.	Parent=Os05t0182650-01
Chr05	irgsp1_rep	mRNA	4971602	4976514	.	+	.	ID=Os05t0182700-01;Name=Os05t0182700-01;Locus_id=Os05g0182700;Oryzabase Gene Symbol Synonym(s)=EP;Oryzabase Gene Name Synonym(s)=Expressed protein;Note=Protein of unknown function DUF1664 family protein.;Transcript_evidence=AK065911 (DDBJ%2C Best hit),AK104343 (DDBJ%2C Best hit);ORF_evidence=A2Y139 (UniProt);InterPro=Protein of unknown function DUF1664 (IPR012458);NIAS_FLcDNA=J013045E01,001-034-B09;Oryzabase=21964;TENOR=Os05t0182700-01
Chr05	irgsp1_rep	five_prime_UTR	4971602	4971749	.	+	.	Parent=Os05t0182700-01
Chr05	irgsp1_rep	CDS	4971750	4971869	.	+	0	Parent=Os05t0182700-01
Chr05	irgsp1_rep	CDS	4972040	4972120	.	+	0	Parent=Os05t0182700-01
Chr05	irgsp1_rep	CDS	4972815	4972899	.	+	0	Parent=Os05t0182700-01
Chr05	irgsp1_rep	CDS	4973313	4973380	.	+	2	Parent=Os05t0182700-01
Chr05	irgsp1_rep	CDS	4973622	4973723	.	+	0	Parent=Os05t0182700-01
Chr05	irgsp1_rep	CDS	4974018	4974107	.	+	0	Parent=Os05t0182700-01
Chr05	irgsp1_rep	CDS	4974350	4974424	.	+	0	Parent=Os05t0182700-01
Chr05	irgsp1_rep	CDS	4974500	4974532	.	+	0	Parent=Os05t0182700-01
Chr05	irgsp1_rep	CDS	4975011	4975085	.	+	0	Parent=Os05t0182700-01
Chr05	irgsp1_rep	CDS	4975672	4975722	.	+	0	Parent=Os05t0182700-01
Chr05	irgsp1_rep	CDS	4975965	4976045	.	+	0	Parent=Os05t0182700-01
Chr05	irgsp1_rep	three_prime_UTR	4976046	4976049	.	+	.	Parent=Os05t0182700-01
Chr05	irgsp1_rep	three_prime_UTR	4976150	4976514	.	+	.	Parent=Os05t0182700-01
Chr05	irgsp1_rep	mRNA	4976749	4981819	.	-	.	ID=Os05t0182800-01;Name=Os05t0182800-01;Locus_id=Os05g0182800;Note=Glutaminyl-tRNA synthetase%2C class Ic domain containing protein.;Transcript_evidence=AK121273 (DDBJ%2C Best hit);ORF_evidence=NP_001152305.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: glutaminyl-tRNA aminoacylation (GO:0006425),Biological Process: tRNA aminoacylation (GO:0043039),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: glutamine-tRNA ligase activity (GO:0004819),Molecular Function: ATP binding (GO:0005524),Molecular Function: ligase activity%2C forming aminoacyl-tRNA and related compounds (GO:0016876);InterPro=Glutamyl/glutaminyl-tRNA synthetase%2C class Ib (IPR000924),Aminoacyl-tRNA synthetase%2C class I%2C conserved site (IPR001412),Glutaminyl-tRNA synthetase%2C class Ib (IPR004514),Glutaminyl-tRNA synthetase%2C class Ib%2C non-specific RNA-binding domain 2 (IPR007638),Glutaminyl-tRNA synthetase%2C class Ib%2C non-specific RNA-binding domain%2C N-terminal (IPR007639),Ribosomal protein L25/Gln-tRNA synthetase%2C anti-codon-binding domain (IPR011035),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Ribosomal protein L25/Gln-tRNA synthetase%2C beta-barrel domain (IPR020056),Glutamyl/glutaminyl-tRNA synthetase%2C class Ib%2C catalytic domain (IPR020058),Glutamyl/glutaminyl-tRNA synthetase%2C class Ib%2C anti-codon binding domain (IPR020059),Glutamyl/glutaminyl-tRNA synthetase%2C class Ib%2C alpha-bundle domain (IPR020061);NIAS_FLcDNA=J023107C15;Expression=AK121273;TENOR=Os05t0182800-01;KEGG=Os05t0182800-01 (EC:6.1.1.18)
Chr05	irgsp1_rep	five_prime_UTR	4981715	4981819	.	-	.	Parent=Os05t0182800-01
Chr05	irgsp1_rep	CDS	4981571	4981714	.	-	0	Parent=Os05t0182800-01
Chr05	irgsp1_rep	CDS	4981446	4981493	.	-	0	Parent=Os05t0182800-01
Chr05	irgsp1_rep	CDS	4981264	4981335	.	-	0	Parent=Os05t0182800-01
Chr05	irgsp1_rep	CDS	4981072	4981171	.	-	0	Parent=Os05t0182800-01
Chr05	irgsp1_rep	CDS	4980713	4980808	.	-	2	Parent=Os05t0182800-01
Chr05	irgsp1_rep	CDS	4980535	4980596	.	-	2	Parent=Os05t0182800-01
Chr05	irgsp1_rep	CDS	4980323	4980424	.	-	0	Parent=Os05t0182800-01
Chr05	irgsp1_rep	CDS	4980140	4980232	.	-	0	Parent=Os05t0182800-01
Chr05	irgsp1_rep	CDS	4979886	4980038	.	-	0	Parent=Os05t0182800-01
Chr05	irgsp1_rep	CDS	4979738	4979793	.	-	0	Parent=Os05t0182800-01
Chr05	irgsp1_rep	CDS	4979433	4979610	.	-	1	Parent=Os05t0182800-01
Chr05	irgsp1_rep	CDS	4979115	4979312	.	-	0	Parent=Os05t0182800-01
Chr05	irgsp1_rep	CDS	4978940	4979038	.	-	0	Parent=Os05t0182800-01
Chr05	irgsp1_rep	CDS	4978698	4978829	.	-	0	Parent=Os05t0182800-01
Chr05	irgsp1_rep	CDS	4978479	4978615	.	-	0	Parent=Os05t0182800-01
Chr05	irgsp1_rep	CDS	4978267	4978366	.	-	1	Parent=Os05t0182800-01
Chr05	irgsp1_rep	CDS	4978065	4978160	.	-	0	Parent=Os05t0182800-01
Chr05	irgsp1_rep	CDS	4977805	4977905	.	-	0	Parent=Os05t0182800-01
Chr05	irgsp1_rep	CDS	4977600	4977705	.	-	1	Parent=Os05t0182800-01
Chr05	irgsp1_rep	CDS	4977418	4977507	.	-	0	Parent=Os05t0182800-01
Chr05	irgsp1_rep	CDS	4977209	4977338	.	-	0	Parent=Os05t0182800-01
Chr05	irgsp1_rep	CDS	4977012	4977109	.	-	2	Parent=Os05t0182800-01
Chr05	irgsp1_rep	three_prime_UTR	4976749	4977011	.	-	.	Parent=Os05t0182800-01
Chr05	irgsp1_rep	mRNA	4976822	4979498	.	-	.	ID=Os05t0182800-02;Name=Os05t0182800-02;Locus_id=Os05g0182800;Note=Similar to glutaminyl-tRNA synthetase.;Transcript_evidence=AK061951 (DDBJ%2C Best hit);ORF_evidence=NP_001152305.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: glutaminyl-tRNA aminoacylation (GO:0006425),Biological Process: tRNA aminoacylation (GO:0043039),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: glutamine-tRNA ligase activity (GO:0004819),Molecular Function: ATP binding (GO:0005524),Molecular Function: ligase activity%2C forming aminoacyl-tRNA and related compounds (GO:0016876);InterPro=Glutamyl/glutaminyl-tRNA synthetase%2C class Ib (IPR000924),Glutaminyl-tRNA synthetase%2C class Ib (IPR004514),Ribosomal protein L25/Gln-tRNA synthetase%2C anti-codon-binding domain (IPR011035),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Ribosomal protein L25/Gln-tRNA synthetase%2C beta-barrel domain (IPR020056),Glutamyl/glutaminyl-tRNA synthetase%2C class Ib%2C catalytic domain (IPR020058),Glutamyl/glutaminyl-tRNA synthetase%2C class Ib%2C anti-codon binding domain (IPR020059),Glutamyl/glutaminyl-tRNA synthetase%2C class Ib%2C alpha-bundle domain (IPR020061);NIAS_FLcDNA=001-042-E11;Expression=AK061951;TENOR=Os05t0182800-02;KEGG=Os05t0182800-02 (EC:6.1.1.18)
Chr05	irgsp1_rep	CDS	4979433	4979498	.	-	0	Parent=Os05t0182800-02
Chr05	irgsp1_rep	CDS	4979115	4979312	.	-	0	Parent=Os05t0182800-02
Chr05	irgsp1_rep	CDS	4978940	4979038	.	-	0	Parent=Os05t0182800-02
Chr05	irgsp1_rep	CDS	4978698	4978829	.	-	0	Parent=Os05t0182800-02
Chr05	irgsp1_rep	CDS	4978479	4978615	.	-	0	Parent=Os05t0182800-02
Chr05	irgsp1_rep	CDS	4978267	4978366	.	-	1	Parent=Os05t0182800-02
Chr05	irgsp1_rep	CDS	4978065	4978160	.	-	0	Parent=Os05t0182800-02
Chr05	irgsp1_rep	CDS	4977805	4977905	.	-	0	Parent=Os05t0182800-02
Chr05	irgsp1_rep	CDS	4977600	4977705	.	-	1	Parent=Os05t0182800-02
Chr05	irgsp1_rep	CDS	4977418	4977507	.	-	0	Parent=Os05t0182800-02
Chr05	irgsp1_rep	CDS	4977209	4977338	.	-	0	Parent=Os05t0182800-02
Chr05	irgsp1_rep	CDS	4977012	4977109	.	-	2	Parent=Os05t0182800-02
Chr05	irgsp1_rep	three_prime_UTR	4976822	4977011	.	-	.	Parent=Os05t0182800-02
Chr05	irgsp1_rep	mRNA	4983551	4986904	.	-	.	ID=Os05t0182900-01;Name=Os05t0182900-01;Locus_id=Os05g0182900;Note=Conserved hypothetical protein.;Transcript_evidence=AK287914 (DDBJ%2C Best hit);ORF_evidence=B9FMU2 (UniProt);NIAS_FLcDNA=J065213M17;TENOR=Os05t0182900-01;KEGG=Os05t0182900-01
Chr05	irgsp1_rep	five_prime_UTR	4986764	4986904	.	-	.	Parent=Os05t0182900-01
Chr05	irgsp1_rep	CDS	4986706	4986763	.	-	0	Parent=Os05t0182900-01
Chr05	irgsp1_rep	CDS	4984646	4984986	.	-	2	Parent=Os05t0182900-01
Chr05	irgsp1_rep	CDS	4983855	4984565	.	-	0	Parent=Os05t0182900-01
Chr05	irgsp1_rep	three_prime_UTR	4983551	4983854	.	-	.	Parent=Os05t0182900-01
Chr05	irgsp1_rep	mRNA	4998309	4999626	.	-	.	ID=Os05t0183100-01;Name=Os05t0183100-01;Locus_id=Os05g0183100;RAP-DB Gene Symbol Synonym(s)=OsWRKY67;RAP-DB Gene Name Synonym(s)=WRKY GENE 67;CGSNL Gene Symbol=WRKY67;CGSNL Gene Name=WRKY GENE 67;Oryzabase Gene Symbol Synonym(s)=OsWRKY67;Oryzabase Gene Name Synonym(s)=Rice WRKY gene67;Note=WRKY transcription factor%2C Positive regulation of blast and bacteria blight resistance;Transcript_evidence=AK066252;ORF_evidence=Q65WY5;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA-binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=WRKY domain superfamily (IPR036576),WRKY domain (IPR003657);NIAS_FLcDNA=J013052M10;Manual Curation=November 7%2C 2018;Literature_PMID=30367631,29375598,Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6582;TENOR=Os05t0183100-01;Subcellular location=nucleus (GO:0005634)
Chr05	irgsp1_rep	five_prime_UTR	4999573	4999626	.	-	.	Parent=Os05t0183100-01
Chr05	irgsp1_rep	CDS	4999373	4999572	.	-	0	Parent=Os05t0183100-01
Chr05	irgsp1_rep	CDS	4999136	4999282	.	-	1	Parent=Os05t0183100-01
Chr05	irgsp1_rep	CDS	4998461	4998698	.	-	1	Parent=Os05t0183100-01
Chr05	irgsp1_rep	three_prime_UTR	4998309	4998460	.	-	.	Parent=Os05t0183100-01
Chr05	irgsp1_rep	mRNA	5025091	5025393	.	-	.	ID=Os05t0183200-00;Name=Os05t0183200-00;Locus_id=Os05g0183200;Note=Similar to barley mlo defense gene homolog6.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001105170.1 (RefSeq);GO=Biological Process: cell death (GO:0008219),Cellular Component: integral to membrane (GO:0016021);InterPro=Mlo-related protein (IPR004326);TENOR=Os05t0183200-00
Chr05	irgsp1_rep	CDS	5025091	5025393	.	-	0	Parent=Os05t0183200-00
Chr05	irgsp1_rep	mRNA	5025931	5027440	.	-	.	ID=Os05t0183300-00;Name=Os05t0183300-00;Locus_id=Os05g0183300;CGSNL Gene Symbol=MLO_;CGSNL Gene Name=POWDERY-MILDEW-RESISTANCE GENE O_;Oryzabase Gene Symbol Synonym(s)=OsMLO12%2C MLO12;Oryzabase Gene Name Synonym(s)=powdery-MiLdew-resistance gene O12%2C Mildew resistance Locus O-12;Note=Similar to barley mlo defense gene homolog6.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001105170.1 (RefSeq);GO=Biological Process: cell death (GO:0008219),Cellular Component: integral to membrane (GO:0016021);InterPro=Mlo-related protein (IPR004326);Oryzabase=9195;TENOR=Os05t0183300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	5027402	5027440	.	-	0	Parent=Os05t0183300-00
Chr05	irgsp1_rep	CDS	5027208	5027282	.	-	0	Parent=Os05t0183300-00
Chr05	irgsp1_rep	CDS	5027018	5027106	.	-	0	Parent=Os05t0183300-00
Chr05	irgsp1_rep	CDS	5026856	5026905	.	-	1	Parent=Os05t0183300-00
Chr05	irgsp1_rep	CDS	5026701	5026741	.	-	2	Parent=Os05t0183300-00
Chr05	irgsp1_rep	CDS	5026271	5026444	.	-	0	Parent=Os05t0183300-00
Chr05	irgsp1_rep	CDS	5026108	5026143	.	-	0	Parent=Os05t0183300-00
Chr05	irgsp1_rep	CDS	5025931	5026002	.	-	0	Parent=Os05t0183300-00
Chr05	irgsp1_rep	mRNA	5031203	5032288	.	-	.	ID=Os05t0183566-00;Name=Os05t0183566-00;Locus_id=Os05g0183566;Note=Similar to barley mlo defense gene homolog6.;Transcript_evidence=AB581579 (DDBJ);ORF_evidence=NP_001105170.1 (RefSeq);GO=Biological Process: cell death (GO:0008219),Cellular Component: integral to membrane (GO:0016021);InterPro=Mlo-related protein (IPR004326);TENOR=Os05t0183566-00
Chr05	irgsp1_rep	five_prime_UTR	5032286	5032288	.	-	.	Parent=Os05t0183566-00
Chr05	irgsp1_rep	CDS	5031203	5032285	.	-	0	Parent=Os05t0183566-00
Chr05	irgsp1_rep	mRNA	5113979	5115430	.	+	.	ID=Os05t0183900-00;Name=Os05t0183900-00;Locus_id=Os05g0183900;Note=Similar to transposon protein CACTA%2C En/Spm sub-class.;Transcript_evidence=AK360948 (DDBJ);ORF_evidence=Q65WX7 (UniProt);GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Putative harbinger transposase-derived nuclease (IPR006912);TENOR=Os05t0183900-00;KEGG=Os05t0183900-00
Chr05	irgsp1_rep	CDS	5113979	5115430	.	+	0	Parent=Os05t0183900-00
Chr05	irgsp1_rep	mRNA	5129615	5130029	.	-	.	ID=Os05t0184016-00;Name=Os05t0184016-00;Locus_id=Os05g0184016;Note=Hypothetical protein.;Transcript_evidence=AK372466 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0184016-00
Chr05	irgsp1_rep	CDS	5129615	5130029	.	-	0	Parent=Os05t0184016-00
Chr05	irgsp1_rep	mRNA	5150266	5162222	.	-	.	ID=Os05t0184250-00;Name=Os05t0184250-00;Locus_id=Os05g0184250;Note=Hypothetical protein.;Transcript_evidence=tplb0058c08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0184250-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	5161715	5162222	.	-	.	Parent=Os05t0184250-00
Chr05	irgsp1_rep	CDS	5161703	5161714	.	-	0	Parent=Os05t0184250-00
Chr05	irgsp1_rep	CDS	5150266	5150693	.	-	0	Parent=Os05t0184250-00
Chr05	irgsp1_rep	mRNA	5150298	5162372	.	+	.	ID=Os05t0184500-00;Name=Os05t0184500-00;Locus_id=Os05g0184500;Note=Conserved hypothetical protein.;Transcript_evidence=AK370449 (DDBJ);ORF_evidence=Q65WX7 (UniProt);TENOR=Os05t0184500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	5150298	5150679	.	+	0	Parent=Os05t0184500-00
Chr05	irgsp1_rep	CDS	5161690	5162372	.	+	2	Parent=Os05t0184500-00
Chr05	irgsp1_rep	mRNA	5187764	5189754	.	-	.	ID=Os05t0184901-01;Name=Os05t0184901-01;Locus_id=Os05g0184901;Note=Phospholipase A2%2C active site domain containing protein.;Transcript_evidence=AK287961 (DDBJ%2C Best hit);ORF_evidence=B6SGX9 (UniProt);NIAS_FLcDNA=J075061D02;TENOR=Os05t0184901-01;KEGG=Os05t0184901-01
Chr05	irgsp1_rep	five_prime_UTR	5189714	5189754	.	-	.	Parent=Os05t0184901-01
Chr05	irgsp1_rep	CDS	5188307	5189713	.	-	0	Parent=Os05t0184901-01
Chr05	irgsp1_rep	three_prime_UTR	5187764	5188306	.	-	.	Parent=Os05t0184901-01
Chr05	irgsp1_rep	mRNA	5238127	5239023	.	-	.	ID=Os05t0185525-00;Name=Os05t0185525-00;Locus_id=Os05g0185525;Note=Non-protein coding transcript.;Transcript_evidence=BT063600 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0185525-00
Chr05	irgsp1_rep	exon	5238127	5239023	.	-	.	Parent=Os05t0185525-00
Chr05	irgsp1_rep	mRNA	5248548	5250036	.	+	.	ID=Os05t0185650-01;Name=Os05t0185650-01;Locus_id=Os05g0185650;Note=Similar to predicted protein.;Transcript_evidence=AK242365 (DDBJ%2C Best hit);ORF_evidence=XP_002867220.1 (RefSeq);NIAS_FLcDNA=J080033A08;TENOR=Os05t0185650-01;KEGG=Os05t0185650-01
Chr05	irgsp1_rep	CDS	5248548	5248679	.	+	0	Parent=Os05t0185650-01
Chr05	irgsp1_rep	CDS	5249316	5249398	.	+	0	Parent=Os05t0185650-01
Chr05	irgsp1_rep	CDS	5249514	5249658	.	+	1	Parent=Os05t0185650-01
Chr05	irgsp1_rep	three_prime_UTR	5249659	5250036	.	+	.	Parent=Os05t0185650-01
Chr05	irgsp1_rep	mRNA	5260532	5262141	.	-	.	ID=Os05t0185700-01;Name=Os05t0185700-01;Locus_id=Os05g0185700;Note=Similar to predicted protein.;Transcript_evidence=AK064724 (DDBJ%2C Best hit);ORF_evidence=NP_200842.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=MaoC-like dehydratase (IPR002539);NIAS_FLcDNA=002-118-G09;Expression=AK064724;TENOR=Os05t0185700-01;KEGG=Os05t0185700-01
Chr05	irgsp1_rep	five_prime_UTR	5261994	5262141	.	-	.	Parent=Os05t0185700-01
Chr05	irgsp1_rep	five_prime_UTR	5261755	5261828	.	-	.	Parent=Os05t0185700-01
Chr05	irgsp1_rep	CDS	5261461	5261754	.	-	0	Parent=Os05t0185700-01
Chr05	irgsp1_rep	CDS	5261210	5261322	.	-	0	Parent=Os05t0185700-01
Chr05	irgsp1_rep	CDS	5261001	5261133	.	-	1	Parent=Os05t0185700-01
Chr05	irgsp1_rep	three_prime_UTR	5260532	5261000	.	-	.	Parent=Os05t0185700-01
Chr05	irgsp1_rep	mRNA	5254254	5262132	.	-	.	ID=Os05t0185700-02;Name=Os05t0185700-02;Locus_id=Os05g0185700;Note=Ribokinase family protein.;Transcript_evidence=AK064157 (DDBJ%2C Best hit);ORF_evidence=Q2MGQ0 (UniProt);GO=Biological Process: D-ribose metabolic process (GO:0006014),Molecular Function: ribokinase activity (GO:0004747);InterPro=Ribokinase (IPR002139),Carbohydrate/purine kinase (IPR011611);NIAS_FLcDNA=002-103-F05;Expression=AK064157;TENOR=Os05t0185700-02;KEGG=Os05t0185700-02
Chr05	irgsp1_rep	five_prime_UTR	5261994	5262132	.	-	.	Parent=Os05t0185700-02
Chr05	irgsp1_rep	five_prime_UTR	5259065	5259115	.	-	.	Parent=Os05t0185700-02
Chr05	irgsp1_rep	CDS	5258972	5259064	.	-	0	Parent=Os05t0185700-02
Chr05	irgsp1_rep	CDS	5258721	5258837	.	-	0	Parent=Os05t0185700-02
Chr05	irgsp1_rep	CDS	5258031	5258133	.	-	0	Parent=Os05t0185700-02
Chr05	irgsp1_rep	CDS	5257854	5257901	.	-	2	Parent=Os05t0185700-02
Chr05	irgsp1_rep	CDS	5257094	5257191	.	-	2	Parent=Os05t0185700-02
Chr05	irgsp1_rep	CDS	5256883	5256997	.	-	0	Parent=Os05t0185700-02
Chr05	irgsp1_rep	CDS	5255422	5255504	.	-	2	Parent=Os05t0185700-02
Chr05	irgsp1_rep	CDS	5254781	5255339	.	-	0	Parent=Os05t0185700-02
Chr05	irgsp1_rep	CDS	5254606	5254655	.	-	2	Parent=Os05t0185700-02
Chr05	irgsp1_rep	three_prime_UTR	5254254	5254605	.	-	.	Parent=Os05t0185700-02
Chr05	irgsp1_rep	mRNA	5180932	5185099	.	-	.	ID=Os05t0185767-01;Name=Os05t0185767-01;Locus_id=Os05g0185767;Note=Hypothetical gene.;Transcript_evidence=AK288224 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090012B15;TENOR=Os05t0185767-01;KEGG=Os05t0185767-01
Chr05	irgsp1_rep	five_prime_UTR	5183688	5185099	.	-	.	Parent=Os05t0185767-01
Chr05	irgsp1_rep	CDS	5183424	5183687	.	-	0	Parent=Os05t0185767-01
Chr05	irgsp1_rep	three_prime_UTR	5180932	5183423	.	-	.	Parent=Os05t0185767-01
Chr05	irgsp1_rep	mRNA	5267024	5270776	.	+	.	ID=Os05t0185800-01;Name=Os05t0185800-01;Locus_id=Os05g0185800;Note=Conserved hypothetical protein.;Transcript_evidence=AK065050 (DDBJ%2C Best hit);ORF_evidence=A2Y150 (UniProt);NIAS_FLcDNA=J013001I17;Expression=AK065050;TENOR=Os05t0185800-01;KEGG=Os05t0185800-01
Chr05	irgsp1_rep	five_prime_UTR	5267024	5267510	.	+	.	Parent=Os05t0185800-01
Chr05	irgsp1_rep	five_prime_UTR	5267615	5267719	.	+	.	Parent=Os05t0185800-01
Chr05	irgsp1_rep	CDS	5267720	5267888	.	+	0	Parent=Os05t0185800-01
Chr05	irgsp1_rep	CDS	5268184	5268242	.	+	2	Parent=Os05t0185800-01
Chr05	irgsp1_rep	CDS	5268601	5269386	.	+	0	Parent=Os05t0185800-01
Chr05	irgsp1_rep	CDS	5269616	5270455	.	+	0	Parent=Os05t0185800-01
Chr05	irgsp1_rep	three_prime_UTR	5270456	5270776	.	+	.	Parent=Os05t0185800-01
Chr05	irgsp1_rep	mRNA	5274199	5277761	.	-	.	ID=Os05t0186000-01;Name=Os05t0186000-01;Locus_id=Os05g0186000;Note=Similar to 30S ribosomal protein S31%2C chloroplast (Fragment).;Transcript_evidence=AK060420 (DDBJ%2C Best hit);ORF_evidence=B6T2D1 (UniProt);NIAS_FLcDNA=001-010-G05;Expression=AK060420;TENOR=Os05t0186000-01;KEGG=Os05t0186000-01
Chr05	irgsp1_rep	five_prime_UTR	5277720	5277761	.	-	.	Parent=Os05t0186000-01
Chr05	irgsp1_rep	CDS	5277536	5277719	.	-	0	Parent=Os05t0186000-01
Chr05	irgsp1_rep	CDS	5277253	5277317	.	-	2	Parent=Os05t0186000-01
Chr05	irgsp1_rep	CDS	5277001	5277132	.	-	0	Parent=Os05t0186000-01
Chr05	irgsp1_rep	three_prime_UTR	5274199	5274498	.	-	.	Parent=Os05t0186000-01
Chr05	irgsp1_rep	mRNA	5276830	5277760	.	-	.	ID=Os05t0186000-02;Name=Os05t0186000-02;Locus_id=Os05g0186000;Note=Similar to PSRP4.;Transcript_evidence=AK058675 (DDBJ%2C Best hit);ORF_evidence=B6T2D1 (UniProt);NIAS_FLcDNA=001-018-H07;Expression=AK058675;TENOR=Os05t0186000-02;KEGG=Os05t0186000-02
Chr05	irgsp1_rep	five_prime_UTR	5277720	5277760	.	-	.	Parent=Os05t0186000-02
Chr05	irgsp1_rep	CDS	5277536	5277719	.	-	0	Parent=Os05t0186000-02
Chr05	irgsp1_rep	CDS	5277253	5277317	.	-	2	Parent=Os05t0186000-02
Chr05	irgsp1_rep	CDS	5277001	5277168	.	-	0	Parent=Os05t0186000-02
Chr05	irgsp1_rep	three_prime_UTR	5276830	5277000	.	-	.	Parent=Os05t0186000-02
Chr05	irgsp1_rep	mRNA	5276791	5277751	.	-	.	ID=Os05t0186000-03;Name=Os05t0186000-03;Locus_id=Os05g0186000;Note=Similar to 30S ribosomal protein S31%2C chloroplast (Fragment).;Transcript_evidence=AK061231 (DDBJ%2C Best hit);ORF_evidence=B7E324 (UniProt);NIAS_FLcDNA=006-211-A09;Expression=AK061231;TENOR=Os05t0186000-03;KEGG=Os05t0186000-03
Chr05	irgsp1_rep	five_prime_UTR	5277720	5277751	.	-	.	Parent=Os05t0186000-03
Chr05	irgsp1_rep	CDS	5277536	5277719	.	-	0	Parent=Os05t0186000-03
Chr05	irgsp1_rep	CDS	5277253	5277317	.	-	2	Parent=Os05t0186000-03
Chr05	irgsp1_rep	CDS	5277001	5277132	.	-	0	Parent=Os05t0186000-03
Chr05	irgsp1_rep	three_prime_UTR	5276791	5277000	.	-	.	Parent=Os05t0186000-03
Chr05	irgsp1_rep	mRNA	5278373	5280638	.	-	.	ID=Os05t0186100-01;Name=Os05t0186100-01;Locus_id=Os05g0186100;CGSNL Gene Symbol=PHP2;CGSNL Gene Name=PSEUDO-PHOSPHOTRANSFER PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsPHP2%2C Hpt4%2C OsHP5%2C OsHpt4;Oryzabase Gene Name Synonym(s)=pseudo-phosphotransfer protein 2;Note=Similar to Histidine-containing phosphotransfer protein 4.;Transcript_evidence=AK240821 (DDBJ%2C Best hit);ORF_evidence=B6SY22 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Molecular Function: signal transducer activity (GO:0004871);InterPro=Signal transduction histidine kinase%2C phosphotransfer (Hpt) domain (IPR008207);NIAS_FLcDNA=J065011J02;Oryzabase=9828;TENOR=Os05t0186100-01;KEGG=Os05t0186100-01
Chr05	irgsp1_rep	five_prime_UTR	5280584	5280638	.	-	.	Parent=Os05t0186100-01
Chr05	irgsp1_rep	CDS	5280524	5280583	.	-	0	Parent=Os05t0186100-01
Chr05	irgsp1_rep	CDS	5279401	5279531	.	-	0	Parent=Os05t0186100-01
Chr05	irgsp1_rep	CDS	5279218	5279286	.	-	1	Parent=Os05t0186100-01
Chr05	irgsp1_rep	CDS	5278903	5278974	.	-	1	Parent=Os05t0186100-01
Chr05	irgsp1_rep	CDS	5278732	5278804	.	-	1	Parent=Os05t0186100-01
Chr05	irgsp1_rep	CDS	5278574	5278624	.	-	0	Parent=Os05t0186100-01
Chr05	irgsp1_rep	three_prime_UTR	5278373	5278573	.	-	.	Parent=Os05t0186100-01
Chr05	irgsp1_rep	mRNA	5293558	5297417	.	-	.	ID=Os05t0186300-01;Name=Os05t0186300-01;Locus_id=Os05g0186300;Oryzabase Gene Symbol Synonym(s)=OscytME2%2C cytME2;Oryzabase Gene Name Synonym(s)=cytosolic NADP malic enzyme 2;Note=Similar to NADP-malic enzyme.;Transcript_evidence=AK070360 (DDBJ%2C Best hit),AK099249 (DDBJ%2C Best hit);ORF_evidence=A2Y154 (UniProt);GO=Biological Process: malate metabolic process (GO:0006108),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: malic enzyme activity (GO:0004470),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: malate dehydrogenase (oxaloacetate-decarboxylating) activity (GO:0016619),Molecular Function: metal ion binding (GO:0046872),Molecular Function: NAD binding (GO:0051287);InterPro=Malic oxidoreductase (IPR001891),Malic enzyme%2C N-terminal (IPR012301),Malic enzyme%2C NAD-binding (IPR012302),Malic enzyme%2C conserved site (IPR015884),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023048G01,J013127E04;Oryzabase=14059;Expression=AK070360;TENOR=Os05t0186300-01;KEGG=Os05t0186300-01 (EC:1.1.1.40)
Chr05	irgsp1_rep	five_prime_UTR	5297267	5297417	.	-	.	Parent=Os05t0186300-01
Chr05	irgsp1_rep	CDS	5297178	5297266	.	-	0	Parent=Os05t0186300-01
Chr05	irgsp1_rep	CDS	5296625	5296820	.	-	1	Parent=Os05t0186300-01
Chr05	irgsp1_rep	CDS	5296136	5296287	.	-	0	Parent=Os05t0186300-01
Chr05	irgsp1_rep	CDS	5295924	5296029	.	-	1	Parent=Os05t0186300-01
Chr05	irgsp1_rep	CDS	5295732	5295797	.	-	0	Parent=Os05t0186300-01
Chr05	irgsp1_rep	CDS	5295540	5295635	.	-	0	Parent=Os05t0186300-01
Chr05	irgsp1_rep	CDS	5295356	5295427	.	-	0	Parent=Os05t0186300-01
Chr05	irgsp1_rep	CDS	5295167	5295250	.	-	0	Parent=Os05t0186300-01
Chr05	irgsp1_rep	CDS	5294902	5295048	.	-	0	Parent=Os05t0186300-01
Chr05	irgsp1_rep	CDS	5294550	5294792	.	-	0	Parent=Os05t0186300-01
Chr05	irgsp1_rep	CDS	5294382	5294459	.	-	0	Parent=Os05t0186300-01
Chr05	irgsp1_rep	CDS	5293934	5294317	.	-	0	Parent=Os05t0186300-01
Chr05	irgsp1_rep	three_prime_UTR	5293558	5293933	.	-	.	Parent=Os05t0186300-01
Chr05	irgsp1_rep	mRNA	5293621	5293838	.	-	.	ID=Os05t0186300-03;Name=Os05t0186300-03;Locus_id=Os05g0186300;Oryzabase Gene Symbol Synonym(s)=OscytME2%2C cytME2;Oryzabase Gene Name Synonym(s)=cytosolic NADP malic enzyme 2;Note=Non-protein coding transcript.;Transcript_evidence=AK071155 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023078F03;Oryzabase=14059;TENOR=Os05t0186300-03
Chr05	irgsp1_rep	exon	5293621	5293838	.	-	.	Parent=Os05t0186300-03
Chr05	irgsp1_rep	mRNA	5293921	5294794	.	+	.	ID=Os05t0186601-00;Name=Os05t0186601-00;Locus_id=Os05g0186601;Note=Hypothetical gene.;Transcript_evidence=EU969101 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0186601-00
Chr05	irgsp1_rep	five_prime_UTR	5293921	5293921	.	+	.	Parent=Os05t0186601-00
Chr05	irgsp1_rep	CDS	5293922	5294316	.	+	0	Parent=Os05t0186601-00
Chr05	irgsp1_rep	CDS	5294381	5294459	.	+	1	Parent=Os05t0186601-00
Chr05	irgsp1_rep	CDS	5294550	5294794	.	+	0	Parent=Os05t0186601-00
Chr05	irgsp1_rep	mRNA	5329989	5331482	.	+	.	ID=Os05t0186900-01;Name=Os05t0186900-01;Locus_id=Os05g0186900;CGSNL Gene Symbol=IAA16;Oryzabase Gene Symbol Synonym(s)=OsIAA16%2C DLN134%2C OsDLN134;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 16%2C DLN repressor 134%2C DLN motif protein 134;Note=Similar to Auxin-responsive protein IAA16.;Transcript_evidence=AK111403 (DDBJ%2C Best hit);ORF_evidence=P0C127 (UniProt);NIAS_FLcDNA=002-182-E05;Oryzabase=10905;TENOR=Os05t0186900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	5329989	5330036	.	+	.	Parent=Os05t0186900-01
Chr05	irgsp1_rep	CDS	5330037	5330315	.	+	0	Parent=Os05t0186900-01
Chr05	irgsp1_rep	three_prime_UTR	5330316	5331482	.	+	.	Parent=Os05t0186900-01
Chr05	irgsp1_rep	mRNA	5333747	5336857	.	+	.	ID=Os05t0187000-01;Name=Os05t0187000-01;Locus_id=Os05g0187000;Oryzabase Gene Symbol Synonym(s)=OsPBB1%2C PUP1;Oryzabase Gene Name Synonym(s)=20S proteasome beta2 subunit%2C proteasome component PUP1;Note=Beta 2 subunit of 20S proteasome (20S proteasome beta subunit).;Transcript_evidence=AK103126 (DDBJ%2C Best hit);ORF_evidence=A2Y157 (UniProt);GO=Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603),Cellular Component: proteasome core complex (GO:0005839),Molecular Function: endopeptidase activity (GO:0004175),Molecular Function: threonine-type endopeptidase activity (GO:0004298);InterPro=Peptidase T1A%2C proteasome beta-subunit (IPR000243),Proteasome%2C subunit alpha/beta (IPR001353),Proteasome%2C beta-type subunit%2C conserved site (IPR016050),Proteasome B-type subunit (IPR023333);NIAS_FLcDNA=J033119N09;Oryzabase=14501;Expression=AK103126;TENOR=Os05t0187000-01;KEGG=Os05t0187000-01 (EC:3.4.25.1)
Chr05	irgsp1_rep	five_prime_UTR	5333747	5333956	.	+	.	Parent=Os05t0187000-01
Chr05	irgsp1_rep	five_prime_UTR	5334394	5334399	.	+	.	Parent=Os05t0187000-01
Chr05	irgsp1_rep	CDS	5334400	5334540	.	+	0	Parent=Os05t0187000-01
Chr05	irgsp1_rep	CDS	5335028	5335169	.	+	0	Parent=Os05t0187000-01
Chr05	irgsp1_rep	CDS	5335310	5335406	.	+	2	Parent=Os05t0187000-01
Chr05	irgsp1_rep	CDS	5335517	5335586	.	+	1	Parent=Os05t0187000-01
Chr05	irgsp1_rep	CDS	5335671	5335775	.	+	0	Parent=Os05t0187000-01
Chr05	irgsp1_rep	CDS	5335918	5336016	.	+	0	Parent=Os05t0187000-01
Chr05	irgsp1_rep	CDS	5336449	5336539	.	+	0	Parent=Os05t0187000-01
Chr05	irgsp1_rep	CDS	5336625	5336698	.	+	2	Parent=Os05t0187000-01
Chr05	irgsp1_rep	three_prime_UTR	5336699	5336857	.	+	.	Parent=Os05t0187000-01
Chr05	irgsp1_rep	mRNA	5335103	5336845	.	+	.	ID=Os05t0187000-02;Name=Os05t0187000-02;Locus_id=Os05g0187000;Oryzabase Gene Symbol Synonym(s)=OsPBB1%2C PUP1;Oryzabase Gene Name Synonym(s)=20S proteasome beta2 subunit%2C proteasome component PUP1;Note=Similar to Proteasome subunit beta type 7-A.;Transcript_evidence=AK058440 (DDBJ%2C Best hit);ORF_evidence=Q9LST8 (UniProt);GO=Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603),Cellular Component: proteasome core complex (GO:0005839),Molecular Function: threonine-type endopeptidase activity (GO:0004298);InterPro=Proteasome%2C subunit alpha/beta (IPR001353),Proteasome B-type subunit (IPR023333);NIAS_FLcDNA=001-015-F11;Oryzabase=14501;Expression=AK058440;TENOR=Os05t0187000-02;KEGG=Os05t0187000-02 (EC:3.4.25.1)
Chr05	irgsp1_rep	CDS	5335103	5335169	.	+	0	Parent=Os05t0187000-02
Chr05	irgsp1_rep	CDS	5335310	5335406	.	+	2	Parent=Os05t0187000-02
Chr05	irgsp1_rep	CDS	5335517	5335586	.	+	1	Parent=Os05t0187000-02
Chr05	irgsp1_rep	CDS	5335671	5335775	.	+	0	Parent=Os05t0187000-02
Chr05	irgsp1_rep	CDS	5335918	5336016	.	+	0	Parent=Os05t0187000-02
Chr05	irgsp1_rep	CDS	5336449	5336539	.	+	0	Parent=Os05t0187000-02
Chr05	irgsp1_rep	CDS	5336625	5336698	.	+	2	Parent=Os05t0187000-02
Chr05	irgsp1_rep	three_prime_UTR	5336699	5336845	.	+	.	Parent=Os05t0187000-02
Chr05	irgsp1_rep	mRNA	5337333	5341148	.	-	.	ID=Os05t0187100-01;Name=Os05t0187100-01;Locus_id=Os05g0187100;CGSNL Gene Symbol=HXK7;CGSNL Gene Name=HEXOKINASE-7;Oryzabase Gene Symbol Synonym(s)=OsHXK7;Oryzabase Gene Name Synonym(s)=Hexokinase 7%2C Hexokinase7%2C hexokinase 1;Note=Similar to Hexokinase.;Transcript_evidence=AK067988 (DDBJ%2C Best hit);ORF_evidence=Q1WM16 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Hexokinase (IPR001312),Hexokinase%2C N-terminal (IPR022672),Hexokinase%2C C-terminal (IPR022673);NIAS_FLcDNA=J013123D05;Oryzabase=9008;Expression=AK067988;TENOR=Os05t0187100-01;KEGG=Os05t0187100-01 (EC:2.7.1.1)
Chr05	irgsp1_rep	five_prime_UTR	5341022	5341148	.	-	.	Parent=Os05t0187100-01
Chr05	irgsp1_rep	CDS	5340834	5341021	.	-	0	Parent=Os05t0187100-01
Chr05	irgsp1_rep	CDS	5339484	5339634	.	-	1	Parent=Os05t0187100-01
Chr05	irgsp1_rep	CDS	5339164	5339343	.	-	0	Parent=Os05t0187100-01
Chr05	irgsp1_rep	CDS	5338909	5338983	.	-	0	Parent=Os05t0187100-01
Chr05	irgsp1_rep	CDS	5338661	5338816	.	-	0	Parent=Os05t0187100-01
Chr05	irgsp1_rep	CDS	5338458	5338556	.	-	0	Parent=Os05t0187100-01
Chr05	irgsp1_rep	CDS	5338220	5338350	.	-	0	Parent=Os05t0187100-01
Chr05	irgsp1_rep	CDS	5337856	5338000	.	-	1	Parent=Os05t0187100-01
Chr05	irgsp1_rep	three_prime_UTR	5337333	5337855	.	-	.	Parent=Os05t0187100-01
Chr05	irgsp1_rep	mRNA	5337160	5341113	.	-	.	ID=Os05t0187100-02;Name=Os05t0187100-02;Locus_id=Os05g0187100;RAP-DB Gene Symbol Synonym(s)=HXK7%2C OsHXK7;RAP-DB Gene Name Synonym(s)=HEXOKINASE-7%2C Hexokinase 7%2C Hexokinase7%2C hexokinase 1;CGSNL Gene Symbol=HXK7;CGSNL Gene Name=HEXOKINASE-7;Oryzabase Gene Symbol Synonym(s)=OsHXK7;Oryzabase Gene Name Synonym(s)=Hexokinase 7%2C Hexokinase7%2C hexokinase 1;Note=Cytosolic hexokinase%2C Sugar signaling and metabolism;Transcript_evidence=DQ116389 (Jinmi),AY884169 (Zhonghua 15);ORF_evidence=Q1WM16;GO=Biological Process: cellular glucose homeostasis (GO:0001678),Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: carbohydrate phosphorylation (GO:0046835),Molecular Function: hexokinase activity (GO:0004396),Molecular Function: ATP binding (GO:0005524),Molecular Function: glucose binding (GO:0005536),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Hexokinase (IPR001312),Hexokinase%2C N-terminal (IPR022672),Hexokinase%2C C-terminal (IPR022673);Manual Curation=November 13%2C 2015;Literature_PMID=25951042,16552590;Oryzabase=9008
Chr05	irgsp1_rep	five_prime_UTR	5341022	5341113	.	-	.	Parent=Os05t0187100-02
Chr05	irgsp1_rep	CDS	5340834	5341021	.	-	0	Parent=Os05t0187100-02
Chr05	irgsp1_rep	CDS	5339484	5339634	.	-	1	Parent=Os05t0187100-02
Chr05	irgsp1_rep	CDS	5339164	5339343	.	-	0	Parent=Os05t0187100-02
Chr05	irgsp1_rep	CDS	5338909	5338983	.	-	0	Parent=Os05t0187100-02
Chr05	irgsp1_rep	CDS	5338661	5338816	.	-	0	Parent=Os05t0187100-02
Chr05	irgsp1_rep	CDS	5338458	5338556	.	-	0	Parent=Os05t0187100-02
Chr05	irgsp1_rep	CDS	5338220	5338350	.	-	0	Parent=Os05t0187100-02
Chr05	irgsp1_rep	CDS	5337919	5338000	.	-	1	Parent=Os05t0187100-02
Chr05	irgsp1_rep	CDS	5337492	5337821	.	-	0	Parent=Os05t0187100-02
Chr05	irgsp1_rep	three_prime_UTR	5337160	5337491	.	-	.	Parent=Os05t0187100-02
Chr05	irgsp1_rep	mRNA	5365122	5366701	.	+	.	ID=Os05t0187500-01;Name=Os05t0187500-01;Locus_id=Os05g0187500;RAP-DB Gene Symbol Synonym(s)=GW5%2C qSW5/GW5%2C GSE5;RAP-DB Gene Name Synonym(s)=GRAIN WIDTH 5;CGSNL Gene Symbol=GW5;CGSNL Gene Name=GRAIN WIDTH 5;Oryzabase Gene Symbol Synonym(s)=qSW5/GW5%2C GSE5;Oryzabase Gene Name Synonym(s)=GRAIN SIZE ON CHROMOSOME 5;Note=IQ calmodulin-binding motif family protein%2C Positive regulator of brassinosteroid signalling%2C Regulation of grain width and weight;Transcript_evidence=KT895078;ORF_evidence=A0A1D8GZC0;GO=Molecular Function: protein binding (GO:0005515);InterPro=Domain of unknown function DUF4005 (IPR025064),IQ motif%2C EF-hand binding site (IPR000048);Manual Curation=December 14%2C 2017;Literature_PMID=28394310,28366824;Oryzabase=15162;TENOR=Os05t0187500-00;KEGG=Os05t0187500-00
Chr05	irgsp1_rep	CDS	5365122	5365565	.	+	0	Parent=Os05t0187500-01
Chr05	irgsp1_rep	CDS	5365652	5365864	.	+	0	Parent=Os05t0187500-01
Chr05	irgsp1_rep	CDS	5365946	5366701	.	+	0	Parent=Os05t0187500-01
Chr05	irgsp1_rep	mRNA	5394456	5398045	.	-	.	ID=Os05t0187800-01;Name=Os05t0187800-01;Locus_id=Os05g0187800;RAP-DB Gene Symbol Synonym(s)=OsDER1;RAP-DB Gene Name Synonym(s)=DERLIN-like protein;CGSNL Gene Symbol=DER1;CGSNL Gene Name=DERLIN 1;Oryzabase Gene Symbol Synonym(s)=OsDER1;Oryzabase Gene Name Synonym(s)=DERLIN-like protein 1;Note=DERLIN-like protein%2C ER-associated protein degradation factor%2C Response to ER stress;Transcript_evidence=AK243296;ORF_evidence=Q06397;NIAS_FLcDNA=J100053G13;Manual Curation=September 13%2C 2018;Literature_PMID=30026288;Oryzabase=14184;TENOR=Os05t0187800-01;KEGG=Os05t0187800-01;Subcellular location=endoplasmic reticulum (GO:0005783)
Chr05	irgsp1_rep	five_prime_UTR	5397950	5398045	.	-	.	Parent=Os05t0187800-01
Chr05	irgsp1_rep	CDS	5397933	5397949	.	-	0	Parent=Os05t0187800-01
Chr05	irgsp1_rep	CDS	5396103	5396238	.	-	1	Parent=Os05t0187800-01
Chr05	irgsp1_rep	CDS	5395680	5395753	.	-	0	Parent=Os05t0187800-01
Chr05	irgsp1_rep	CDS	5395483	5395576	.	-	1	Parent=Os05t0187800-01
Chr05	irgsp1_rep	CDS	5395251	5395379	.	-	0	Parent=Os05t0187800-01
Chr05	irgsp1_rep	CDS	5394972	5395132	.	-	0	Parent=Os05t0187800-01
Chr05	irgsp1_rep	CDS	5394743	5394860	.	-	1	Parent=Os05t0187800-01
Chr05	irgsp1_rep	three_prime_UTR	5394456	5394742	.	-	.	Parent=Os05t0187800-01
Chr05	irgsp1_rep	mRNA	5414839	5415464	.	+	.	ID=Os05t0188100-01;Name=Os05t0188100-01;Locus_id=Os05g0188100;Note=Conserved hypothetical protein.;Transcript_evidence=AK242429 (DDBJ%2C Best hit);ORF_evidence=NP_001054839.1 (RefSeq);NIAS_FLcDNA=J080090D12;TENOR=Os05t0188100-01;KEGG=Os05t0188100-01
Chr05	irgsp1_rep	five_prime_UTR	5414839	5414936	.	+	.	Parent=Os05t0188100-01
Chr05	irgsp1_rep	CDS	5414937	5415206	.	+	0	Parent=Os05t0188100-01
Chr05	irgsp1_rep	three_prime_UTR	5415207	5415464	.	+	.	Parent=Os05t0188100-01
Chr05	irgsp1_rep	mRNA	5419379	5419987	.	+	.	ID=Os05t0188300-01;Name=Os05t0188300-01;Locus_id=Os05g0188300;Note=Uncharacterised protein family UPF0546 domain containing protein.;Transcript_evidence=AK070957 (DDBJ%2C Best hit);ORF_evidence=B8AYW4 (UniProt);InterPro=Uncharacterised protein family UPF0546 (IPR018908);NIAS_FLcDNA=J023070E02;Expression=AK070957;TENOR=Os05t0188300-01;KEGG=Os05t0188300-01
Chr05	irgsp1_rep	five_prime_UTR	5419379	5419435	.	+	.	Parent=Os05t0188300-01
Chr05	irgsp1_rep	CDS	5419436	5419831	.	+	0	Parent=Os05t0188300-01
Chr05	irgsp1_rep	three_prime_UTR	5419832	5419987	.	+	.	Parent=Os05t0188300-01
Chr05	irgsp1_rep	mRNA	5424381	5428971	.	+	.	ID=Os05t0188500-01;Name=Os05t0188500-01;Locus_id=Os05g0188500;Note=Similar to SCC3.;Transcript_evidence=AK100219 (DDBJ%2C Best hit);ORF_evidence=Q6UB39 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),STAG (IPR013721),Armadillo-type fold (IPR016024),Stromalin conservative domain (IPR020839);NIAS_FLcDNA=J023046E22;Expression=AK100219;TENOR=Os05t0188500-01;KEGG=Os05t0188500-01
Chr05	irgsp1_rep	five_prime_UTR	5424381	5424477	.	+	.	Parent=Os05t0188500-01
Chr05	irgsp1_rep	CDS	5424478	5424510	.	+	0	Parent=Os05t0188500-01
Chr05	irgsp1_rep	CDS	5424599	5424770	.	+	0	Parent=Os05t0188500-01
Chr05	irgsp1_rep	CDS	5426023	5426135	.	+	2	Parent=Os05t0188500-01
Chr05	irgsp1_rep	CDS	5426211	5426303	.	+	0	Parent=Os05t0188500-01
Chr05	irgsp1_rep	CDS	5426468	5426631	.	+	0	Parent=Os05t0188500-01
Chr05	irgsp1_rep	CDS	5426715	5426951	.	+	1	Parent=Os05t0188500-01
Chr05	irgsp1_rep	CDS	5427126	5427270	.	+	1	Parent=Os05t0188500-01
Chr05	irgsp1_rep	CDS	5427369	5427547	.	+	0	Parent=Os05t0188500-01
Chr05	irgsp1_rep	CDS	5428384	5428529	.	+	1	Parent=Os05t0188500-01
Chr05	irgsp1_rep	CDS	5428626	5428753	.	+	2	Parent=Os05t0188500-01
Chr05	irgsp1_rep	CDS	5428828	5428971	.	+	0	Parent=Os05t0188500-01
Chr05	irgsp1_rep	mRNA	5424434	5433010	.	+	.	ID=Os05t0188500-02;Name=Os05t0188500-02;Locus_id=Os05g0188500;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=AK069089 (DDBJ%2C Best hit);ORF_evidence=Q6UB39 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),STAG (IPR013721),Armadillo-type fold (IPR016024),Stromalin conservative domain (IPR020839);NIAS_FLcDNA=J023008B14;Expression=AK069089;TENOR=Os05t0188500-02;KEGG=Os05t0188500-02
Chr05	irgsp1_rep	five_prime_UTR	5424434	5424477	.	+	.	Parent=Os05t0188500-02
Chr05	irgsp1_rep	CDS	5424478	5424510	.	+	0	Parent=Os05t0188500-02
Chr05	irgsp1_rep	CDS	5424599	5424770	.	+	0	Parent=Os05t0188500-02
Chr05	irgsp1_rep	CDS	5426023	5426135	.	+	2	Parent=Os05t0188500-02
Chr05	irgsp1_rep	CDS	5426211	5426303	.	+	0	Parent=Os05t0188500-02
Chr05	irgsp1_rep	CDS	5426468	5426631	.	+	0	Parent=Os05t0188500-02
Chr05	irgsp1_rep	CDS	5426715	5426951	.	+	1	Parent=Os05t0188500-02
Chr05	irgsp1_rep	CDS	5427126	5427270	.	+	1	Parent=Os05t0188500-02
Chr05	irgsp1_rep	CDS	5427369	5427547	.	+	0	Parent=Os05t0188500-02
Chr05	irgsp1_rep	CDS	5428384	5428529	.	+	1	Parent=Os05t0188500-02
Chr05	irgsp1_rep	CDS	5428626	5428753	.	+	2	Parent=Os05t0188500-02
Chr05	irgsp1_rep	CDS	5428828	5429001	.	+	0	Parent=Os05t0188500-02
Chr05	irgsp1_rep	CDS	5429606	5429767	.	+	0	Parent=Os05t0188500-02
Chr05	irgsp1_rep	CDS	5429847	5430047	.	+	0	Parent=Os05t0188500-02
Chr05	irgsp1_rep	CDS	5430120	5430257	.	+	0	Parent=Os05t0188500-02
Chr05	irgsp1_rep	CDS	5430361	5430561	.	+	0	Parent=Os05t0188500-02
Chr05	irgsp1_rep	CDS	5430691	5430835	.	+	0	Parent=Os05t0188500-02
Chr05	irgsp1_rep	CDS	5430962	5431068	.	+	2	Parent=Os05t0188500-02
Chr05	irgsp1_rep	CDS	5431217	5431357	.	+	0	Parent=Os05t0188500-02
Chr05	irgsp1_rep	CDS	5431661	5431926	.	+	0	Parent=Os05t0188500-02
Chr05	irgsp1_rep	CDS	5432008	5432132	.	+	1	Parent=Os05t0188500-02
Chr05	irgsp1_rep	CDS	5432230	5432496	.	+	2	Parent=Os05t0188500-02
Chr05	irgsp1_rep	CDS	5432637	5432650	.	+	2	Parent=Os05t0188500-02
Chr05	irgsp1_rep	three_prime_UTR	5432651	5433010	.	+	.	Parent=Os05t0188500-02
Chr05	irgsp1_rep	mRNA	5437063	5445076	.	+	.	ID=Os05t0188600-01;Name=Os05t0188600-01;Locus_id=Os05g0188600;Note=Conserved hypothetical protein.;Transcript_evidence=AK111527 (DDBJ%2C Best hit);ORF_evidence=B9FMW0 (UniProt);NIAS_FLcDNA=J013021F13;TENOR=Os05t0188600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	5437063	5437377	.	+	.	Parent=Os05t0188600-01
Chr05	irgsp1_rep	five_prime_UTR	5438251	5438256	.	+	.	Parent=Os05t0188600-01
Chr05	irgsp1_rep	CDS	5438257	5438382	.	+	0	Parent=Os05t0188600-01
Chr05	irgsp1_rep	CDS	5438448	5438759	.	+	0	Parent=Os05t0188600-01
Chr05	irgsp1_rep	three_prime_UTR	5438760	5438991	.	+	.	Parent=Os05t0188600-01
Chr05	irgsp1_rep	three_prime_UTR	5439095	5439220	.	+	.	Parent=Os05t0188600-01
Chr05	irgsp1_rep	three_prime_UTR	5440188	5440403	.	+	.	Parent=Os05t0188600-01
Chr05	irgsp1_rep	three_prime_UTR	5440821	5440941	.	+	.	Parent=Os05t0188600-01
Chr05	irgsp1_rep	three_prime_UTR	5441069	5441164	.	+	.	Parent=Os05t0188600-01
Chr05	irgsp1_rep	three_prime_UTR	5441267	5441428	.	+	.	Parent=Os05t0188600-01
Chr05	irgsp1_rep	three_prime_UTR	5441543	5441834	.	+	.	Parent=Os05t0188600-01
Chr05	irgsp1_rep	three_prime_UTR	5441921	5442043	.	+	.	Parent=Os05t0188600-01
Chr05	irgsp1_rep	three_prime_UTR	5442140	5442212	.	+	.	Parent=Os05t0188600-01
Chr05	irgsp1_rep	three_prime_UTR	5442389	5442449	.	+	.	Parent=Os05t0188600-01
Chr05	irgsp1_rep	three_prime_UTR	5442806	5442916	.	+	.	Parent=Os05t0188600-01
Chr05	irgsp1_rep	three_prime_UTR	5443007	5443480	.	+	.	Parent=Os05t0188600-01
Chr05	irgsp1_rep	three_prime_UTR	5443560	5443594	.	+	.	Parent=Os05t0188600-01
Chr05	irgsp1_rep	three_prime_UTR	5444147	5445076	.	+	.	Parent=Os05t0188600-01
Chr05	irgsp1_rep	mRNA	5441429	5444673	.	+	.	ID=Os05t0188600-02;Name=Os05t0188600-02;Locus_id=Os05g0188600;Note=Hypothetical conserved gene.;Transcript_evidence=AK111674 (DDBJ%2C Best hit);ORF_evidence=B9FMW0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),Homeodomain-related (IPR012287);NIAS_FLcDNA=J013157O10;TENOR=Os05t0188600-02
Chr05	irgsp1_rep	five_prime_UTR	5441429	5441503	.	+	.	Parent=Os05t0188600-02
Chr05	irgsp1_rep	CDS	5441504	5441834	.	+	0	Parent=Os05t0188600-02
Chr05	irgsp1_rep	CDS	5441921	5442043	.	+	2	Parent=Os05t0188600-02
Chr05	irgsp1_rep	CDS	5442140	5442212	.	+	2	Parent=Os05t0188600-02
Chr05	irgsp1_rep	CDS	5442389	5442449	.	+	1	Parent=Os05t0188600-02
Chr05	irgsp1_rep	CDS	5442806	5442916	.	+	0	Parent=Os05t0188600-02
Chr05	irgsp1_rep	CDS	5443007	5443480	.	+	0	Parent=Os05t0188600-02
Chr05	irgsp1_rep	CDS	5443560	5443594	.	+	0	Parent=Os05t0188600-02
Chr05	irgsp1_rep	CDS	5444147	5444673	.	+	1	Parent=Os05t0188600-02
Chr05	irgsp1_rep	mRNA	5446772	5448502	.	+	.	ID=Os05t0188700-01;Name=Os05t0188700-01;Locus_id=Os05g0188700;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=AK243190 (DDBJ%2C Best hit);ORF_evidence=NP_001174255.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J100039I23;TENOR=Os05t0188700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	5446772	5446870	.	+	.	Parent=Os05t0188700-01
Chr05	irgsp1_rep	CDS	5446871	5448079	.	+	0	Parent=Os05t0188700-01
Chr05	irgsp1_rep	three_prime_UTR	5448080	5448502	.	+	.	Parent=Os05t0188700-01
Chr05	irgsp1_rep	mRNA	5446884	5447975	.	-	.	ID=Os05t0188750-00;Name=Os05t0188750-00;Locus_id=Os05g0188750;Note=Hypothetical protein.;Transcript_evidence=BT068200 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0188750-00
Chr05	irgsp1_rep	five_prime_UTR	5447975	5447975	.	-	.	Parent=Os05t0188750-00
Chr05	irgsp1_rep	CDS	5447363	5447974	.	-	0	Parent=Os05t0188750-00
Chr05	irgsp1_rep	CDS	5446910	5447275	.	-	0	Parent=Os05t0188750-00
Chr05	irgsp1_rep	three_prime_UTR	5446884	5446909	.	-	.	Parent=Os05t0188750-00
Chr05	irgsp1_rep	mRNA	5450728	5451973	.	+	.	ID=Os05t0188800-00;Name=Os05t0188800-00;Locus_id=Os05g0188800;Note=Similar to H0403D02.13 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q259S1 (UniProt);GO=Biological Process: ubiquinone biosynthetic process (GO:0006744);InterPro=Coenzyme Q biosynthesis Coq4 (IPR007715);TENOR=Os05t0188800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	5450728	5450907	.	+	0	Parent=Os05t0188800-00
Chr05	irgsp1_rep	CDS	5451470	5451973	.	+	0	Parent=Os05t0188800-00
Chr05	irgsp1_rep	mRNA	5472720	5474678	.	-	.	ID=Os05t0189300-01;Name=Os05t0189300-01;Locus_id=Os05g0189300;Note=Vegetative storage protein/acid phosphatase domain containing protein.;Transcript_evidence=AK067327 (DDBJ%2C Best hit),AK060874 (DDBJ%2C Best hit),AK104624 (DDBJ%2C Best hit),AK104203 (DDBJ%2C Best hit);ORF_evidence=B6TV55 (UniProt);GO=Molecular Function: acid phosphatase activity (GO:0003993);InterPro=Acid phosphatase (Class B) (IPR005519),Acid phosphatase%2C plant (IPR010028),Vegetative storage protein/acid phosphatase (IPR014403),HAD-like domain (IPR023214);NIAS_FLcDNA=J013099D13,001-035-A01,006-310-A08,006-304-C10;TENOR=Os05t0189300-01
Chr05	irgsp1_rep	five_prime_UTR	5474624	5474678	.	-	.	Parent=Os05t0189300-01
Chr05	irgsp1_rep	CDS	5474253	5474623	.	-	0	Parent=Os05t0189300-01
Chr05	irgsp1_rep	CDS	5472967	5473351	.	-	1	Parent=Os05t0189300-01
Chr05	irgsp1_rep	three_prime_UTR	5472720	5472966	.	-	.	Parent=Os05t0189300-01
Chr05	irgsp1_rep	mRNA	5488413	5490689	.	-	.	ID=Os05t0189425-00;Name=Os05t0189425-00;Locus_id=Os05g0189425;Note=Conserved hypothetical protein.;Transcript_evidence=CU406507 (DDBJ%2C Best hit);ORF_evidence=Q5Z550 (UniProt);TENOR=Os05t0189425-00
Chr05	irgsp1_rep	five_prime_UTR	5490292	5490689	.	-	.	Parent=Os05t0189425-00
Chr05	irgsp1_rep	CDS	5490240	5490291	.	-	0	Parent=Os05t0189425-00
Chr05	irgsp1_rep	CDS	5489852	5489917	.	-	2	Parent=Os05t0189425-00
Chr05	irgsp1_rep	CDS	5488686	5488726	.	-	2	Parent=Os05t0189425-00
Chr05	irgsp1_rep	three_prime_UTR	5488413	5488685	.	-	.	Parent=Os05t0189425-00
Chr05	irgsp1_rep	mRNA	5508436	5510290	.	-	.	ID=Os05t0189900-01;Name=Os05t0189900-01;Locus_id=Os05g0189900;Note=Vegetative storage protein/acid phosphatase domain containing protein.;Transcript_evidence=AK061489 (DDBJ%2C Best hit);ORF_evidence=B6TV55 (UniProt);GO=Molecular Function: acid phosphatase activity (GO:0003993);InterPro=Acid phosphatase (Class B) (IPR005519),Vegetative storage protein/acid phosphatase (IPR014403),HAD-like domain (IPR023214);NIAS_FLcDNA=006-309-B02;Expression=AK061489;TENOR=Os05t0189900-01;KEGG=Os05t0189900-01
Chr05	irgsp1_rep	five_prime_UTR	5510224	5510290	.	-	.	Parent=Os05t0189900-01
Chr05	irgsp1_rep	CDS	5509856	5510223	.	-	0	Parent=Os05t0189900-01
Chr05	irgsp1_rep	CDS	5508716	5509100	.	-	1	Parent=Os05t0189900-01
Chr05	irgsp1_rep	three_prime_UTR	5508436	5508715	.	-	.	Parent=Os05t0189900-01
Chr05	irgsp1_rep	mRNA	5511881	5512895	.	-	.	ID=Os05t0190000-00;Name=Os05t0190000-00;Locus_id=Os05g0190000;Note=Hypothetical gene.;Transcript_evidence=CT837591 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os05t0190000-00;KEGG=Os05t0190000-00
Chr05	irgsp1_rep	five_prime_UTR	5512698	5512895	.	-	.	Parent=Os05t0190000-00
Chr05	irgsp1_rep	CDS	5511945	5512697	.	-	0	Parent=Os05t0190000-00
Chr05	irgsp1_rep	three_prime_UTR	5511881	5511944	.	-	.	Parent=Os05t0190000-00
Chr05	irgsp1_rep	mRNA	5534529	5536108	.	-	.	ID=Os05t0190300-03;Name=Os05t0190300-03;Locus_id=Os05g0190300;Note=Acid phosphatase (Class B) family protein.;Transcript_evidence=AK119190 (DDBJ%2C Best hit),AK061507 (DDBJ%2C Best hit),AK104180 (DDBJ%2C Best hit),AK104252 (DDBJ%2C Best hit),AK104267 (DDBJ%2C Best hit),AK104355 (DDBJ%2C Best hit),AK106112 (DDBJ%2C Best hit);ORF_evidence=B6TV55 (UniProt);NIAS_FLcDNA=001-039-H02,006-309-F05,006-301-H06,006-309-A07,006-310-H12,001-034-H04,001-207-D12;TENOR=Os05t0190300-03;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	5536045	5536108	.	-	.	Parent=Os05t0190300-03
Chr05	irgsp1_rep	CDS	5535698	5536044	.	-	0	Parent=Os05t0190300-03
Chr05	irgsp1_rep	CDS	5534845	5535229	.	-	1	Parent=Os05t0190300-03
Chr05	irgsp1_rep	three_prime_UTR	5534529	5534844	.	-	.	Parent=Os05t0190300-03
Chr05	irgsp1_rep	mRNA	5553632	5554934	.	-	.	ID=Os05t0190500-02;Name=Os05t0190500-02;Locus_id=Os05g0190500;Oryzabase Gene Symbol Synonym(s)=OsVSP2;Oryzabase Gene Name Synonym(s)=VEGETATIVE STORAGE PROTEIN 2;Note=Similar to Acid phosphatase.;Transcript_evidence=AK109335 (DDBJ%2C Best hit),AK060968 (DDBJ%2C Best hit),AK104246 (DDBJ%2C Best hit),AK104460 (DDBJ%2C Best hit),AK104519 (DDBJ%2C Best hit);ORF_evidence=B6TV55 (UniProt);NIAS_FLcDNA=006-202-C11,006-202-C05,006-308-E04,006-301-B10,006-303-D05;Oryzabase=18462;Expression=AK109335;TENOR=Os05t0190500-02;KEGG=Os05t0190500-02
Chr05	irgsp1_rep	five_prime_UTR	5554889	5554934	.	-	.	Parent=Os05t0190500-02
Chr05	irgsp1_rep	CDS	5554476	5554888	.	-	0	Parent=Os05t0190500-02
Chr05	irgsp1_rep	CDS	5553956	5554340	.	-	1	Parent=Os05t0190500-02
Chr05	irgsp1_rep	three_prime_UTR	5553632	5553955	.	-	.	Parent=Os05t0190500-02
Chr05	irgsp1_rep	mRNA	5628754	5632906	.	-	.	ID=Os05t0191500-01;Name=Os05t0191500-01;Locus_id=Os05g0191500;Note=Similar to stem 28 kDa glycoprotein.;Transcript_evidence=AK059825 (DDBJ%2C Best hit);ORF_evidence=B6TV55 (UniProt);GO=Molecular Function: acid phosphatase activity (GO:0003993);InterPro=Acid phosphatase (Class B) (IPR005519);NIAS_FLcDNA=006-205-F04;Expression=AK059825;TENOR=Os05t0191500-01;KEGG=Os05t0191500-01
Chr05	irgsp1_rep	five_prime_UTR	5632873	5632906	.	-	.	Parent=Os05t0191500-01
Chr05	irgsp1_rep	CDS	5632397	5632872	.	-	0	Parent=Os05t0191500-01
Chr05	irgsp1_rep	CDS	5629241	5629319	.	-	1	Parent=Os05t0191500-01
Chr05	irgsp1_rep	three_prime_UTR	5628754	5629240	.	-	.	Parent=Os05t0191500-01
Chr05	irgsp1_rep	mRNA	5625713	5632906	.	-	.	ID=Os05t0191500-02;Name=Os05t0191500-02;Locus_id=Os05g0191500;Note=Similar to Stem 28 kDa glycoprotein.;Transcript_evidence=AK110669 (DDBJ%2C Best hit);ORF_evidence=B6TV55 (UniProt);GO=Molecular Function: acid phosphatase activity (GO:0003993);InterPro=Acid phosphatase (Class B) (IPR005519);NIAS_FLcDNA=002-169-F12;TENOR=Os05t0191500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	5632873	5632906	.	-	.	Parent=Os05t0191500-02
Chr05	irgsp1_rep	CDS	5632397	5632872	.	-	0	Parent=Os05t0191500-02
Chr05	irgsp1_rep	CDS	5626098	5626155	.	-	1	Parent=Os05t0191500-02
Chr05	irgsp1_rep	three_prime_UTR	5625713	5626097	.	-	.	Parent=Os05t0191500-02
Chr05	irgsp1_rep	mRNA	5630849	5632904	.	-	.	ID=Os05t0191500-03;Name=Os05t0191500-03;Locus_id=Os05g0191500;Note=Similar to stem 28 kDa glycoprotein.;Transcript_evidence=AK066719 (DDBJ%2C Best hit);ORF_evidence=B6TV55 (UniProt);GO=Molecular Function: acid phosphatase activity (GO:0003993);InterPro=Acid phosphatase (Class B) (IPR005519);NIAS_FLcDNA=J013082K18;Expression=AK066719;TENOR=Os05t0191500-03;KEGG=Os05t0191500-03
Chr05	irgsp1_rep	five_prime_UTR	5632873	5632904	.	-	.	Parent=Os05t0191500-03
Chr05	irgsp1_rep	CDS	5632225	5632872	.	-	0	Parent=Os05t0191500-03
Chr05	irgsp1_rep	three_prime_UTR	5630849	5632224	.	-	.	Parent=Os05t0191500-03
Chr05	irgsp1_rep	mRNA	5638522	5641118	.	-	.	ID=Os05t0191700-00;Name=Os05t0191700-00;Locus_id=Os05g0191700;Note=Similar to Stem 28 kDa glycoprotein.;Transcript_evidence=ab initio prediction;ORF_evidence=B6TV55 (UniProt);GO=Molecular Function: acid phosphatase activity (GO:0003993);InterPro=Acid phosphatase (Class B) (IPR005519),HAD-like domain (IPR023214);TENOR=Os05t0191700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	5640805	5641118	.	-	0	Parent=Os05t0191700-00
Chr05	irgsp1_rep	CDS	5639037	5639420	.	-	1	Parent=Os05t0191700-00
Chr05	irgsp1_rep	CDS	5638522	5638786	.	-	1	Parent=Os05t0191700-00
Chr05	irgsp1_rep	mRNA	5640669	5641007	.	+	.	ID=Os05t0191800-00;Name=Os05t0191800-00;Locus_id=Os05g0191800;Note=Non-protein coding transcript.;Transcript_evidence=BT064591 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0191800-00
Chr05	irgsp1_rep	exon	5640669	5641007	.	+	.	Parent=Os05t0191800-00
Chr05	irgsp1_rep	mRNA	5652659	5654777	.	-	.	ID=Os05t0192100-01;Name=Os05t0192100-01;Locus_id=Os05g0192100;Note=Similar to Stem 28 kDa glycoprotein.;Transcript_evidence=AK061404 (DDBJ%2C Best hit);ORF_evidence=B6TV55 (UniProt);NIAS_FLcDNA=006-306-A01;TENOR=Os05t0192100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	5654735	5654777	.	-	.	Parent=Os05t0192100-01
Chr05	irgsp1_rep	CDS	5654432	5654734	.	-	0	Parent=Os05t0192100-01
Chr05	irgsp1_rep	three_prime_UTR	5654294	5654431	.	-	.	Parent=Os05t0192100-01
Chr05	irgsp1_rep	three_prime_UTR	5652659	5653305	.	-	.	Parent=Os05t0192100-01
Chr05	irgsp1_rep	mRNA	5654289	5654629	.	+	.	ID=Os05t0192200-00;Name=Os05t0192200-00;Locus_id=Os05g0192200;Note=Hypothetical protein.;Transcript_evidence=BT064591 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0192200-00
Chr05	irgsp1_rep	five_prime_UTR	5654289	5654289	.	+	.	Parent=Os05t0192200-00
Chr05	irgsp1_rep	CDS	5654290	5654613	.	+	0	Parent=Os05t0192200-00
Chr05	irgsp1_rep	three_prime_UTR	5654614	5654629	.	+	.	Parent=Os05t0192200-00
Chr05	irgsp1_rep	mRNA	5678183	5678671	.	-	.	ID=Os05t0192500-00;Name=Os05t0192500-00;Locus_id=Os05g0192500;Note=Conserved hypothetical protein.;Transcript_evidence=AK359463 (DDBJ);ORF_evidence=A2Y183 (UniProt);TENOR=Os05t0192500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	5678183	5678671	.	-	0	Parent=Os05t0192500-00
Chr05	irgsp1_rep	mRNA	5673470	5674010	.	+	.	ID=Os05t0192700-01;Name=Os05t0192700-01;Locus_id=Os05g0192700;Note=Conserved hypothetical protein.;Transcript_evidence=AK243667 (DDBJ%2C Best hit);ORF_evidence=NP_001174258.1 (RefSeq);NIAS_FLcDNA=J100089K01;TENOR=Os05t0192700-01;KEGG=Os05t0192700-01
Chr05	irgsp1_rep	five_prime_UTR	5673470	5673564	.	+	.	Parent=Os05t0192700-01
Chr05	irgsp1_rep	CDS	5673565	5673963	.	+	0	Parent=Os05t0192700-01
Chr05	irgsp1_rep	three_prime_UTR	5673964	5674010	.	+	.	Parent=Os05t0192700-01
Chr05	irgsp1_rep	mRNA	5743005	5744275	.	-	.	ID=Os05t0193600-01;Name=Os05t0193600-01;Locus_id=Os05g0193600;Note=Conserved hypothetical protein.;Transcript_evidence=AK064687 (DDBJ%2C Best hit);ORF_evidence=Q6H4N4 (UniProt);NIAS_FLcDNA=002-116-D12;TENOR=Os05t0193600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	5744235	5744275	.	-	.	Parent=Os05t0193600-01
Chr05	irgsp1_rep	CDS	5743947	5744234	.	-	0	Parent=Os05t0193600-01
Chr05	irgsp1_rep	three_prime_UTR	5743005	5743946	.	-	.	Parent=Os05t0193600-01
Chr05	irgsp1_rep	mRNA	5747345	5747866	.	+	.	ID=Os05t0193700-00;Name=Os05t0193700-00;Locus_id=Os05g0193700;Note=IQ calmodulin-binding region domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001054854.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);TENOR=Os05t0193700-00;KEGG=Os05t0193700-00
Chr05	irgsp1_rep	CDS	5747345	5747563	.	+	0	Parent=Os05t0193700-00
Chr05	irgsp1_rep	CDS	5747633	5747866	.	+	0	Parent=Os05t0193700-00
Chr05	irgsp1_rep	mRNA	5749607	5750937	.	+	.	ID=Os05t0193800-01;Name=Os05t0193800-01;Locus_id=Os05g0193800;Note=Conserved hypothetical protein.;Transcript_evidence=AK058865 (DDBJ%2C Best hit);ORF_evidence=Q8H422 (UniProt);NIAS_FLcDNA=001-006-A02;Expression=AK058865;TENOR=Os05t0193800-01;KEGG=Os05t0193800-01
Chr05	irgsp1_rep	five_prime_UTR	5749607	5749989	.	+	.	Parent=Os05t0193800-01
Chr05	irgsp1_rep	five_prime_UTR	5750382	5750534	.	+	.	Parent=Os05t0193800-01
Chr05	irgsp1_rep	CDS	5750535	5750557	.	+	0	Parent=Os05t0193800-01
Chr05	irgsp1_rep	CDS	5750707	5750929	.	+	1	Parent=Os05t0193800-01
Chr05	irgsp1_rep	three_prime_UTR	5750930	5750937	.	+	.	Parent=Os05t0193800-01
Chr05	irgsp1_rep	mRNA	5749614	5750937	.	+	.	ID=Os05t0193800-02;Name=Os05t0193800-02;Locus_id=Os05g0193800;Note=Similar to cDNA clone:001-006-A02%2C full insert sequence.;Transcript_evidence=AK067940 (DDBJ%2C Best hit);ORF_evidence=B7E370 (UniProt);NIAS_FLcDNA=J013125O22;Expression=AK067940;TENOR=Os05t0193800-02;KEGG=Os05t0193800-02
Chr05	irgsp1_rep	five_prime_UTR	5749614	5749664	.	+	.	Parent=Os05t0193800-02
Chr05	irgsp1_rep	CDS	5749665	5749989	.	+	0	Parent=Os05t0193800-02
Chr05	irgsp1_rep	CDS	5750210	5750279	.	+	2	Parent=Os05t0193800-02
Chr05	irgsp1_rep	CDS	5750385	5750538	.	+	1	Parent=Os05t0193800-02
Chr05	irgsp1_rep	three_prime_UTR	5750539	5750557	.	+	.	Parent=Os05t0193800-02
Chr05	irgsp1_rep	three_prime_UTR	5750707	5750937	.	+	.	Parent=Os05t0193800-02
Chr05	irgsp1_rep	mRNA	5756504	5760603	.	-	.	ID=Os05t0193900-00;Name=Os05t0193900-00;Locus_id=Os05g0193900;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FIB2 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Cellular Component: cullin-RING ubiquitin ligase complex (GO:0031461),Molecular Function: ubiquitin protein ligase binding (GO:0031625);InterPro=Cullin%2C N-terminal (IPR001373),Cullin repeat-like-containing domain (IPR016159);TENOR=Os05t0193900-00;KEGG=Os05t0193900-00
Chr05	irgsp1_rep	CDS	5760500	5760603	.	-	0	Parent=Os05t0193900-00
Chr05	irgsp1_rep	CDS	5760240	5760392	.	-	1	Parent=Os05t0193900-00
Chr05	irgsp1_rep	CDS	5759865	5759964	.	-	1	Parent=Os05t0193900-00
Chr05	irgsp1_rep	CDS	5758835	5759020	.	-	0	Parent=Os05t0193900-00
Chr05	irgsp1_rep	CDS	5758474	5758590	.	-	0	Parent=Os05t0193900-00
Chr05	irgsp1_rep	CDS	5758337	5758399	.	-	0	Parent=Os05t0193900-00
Chr05	irgsp1_rep	CDS	5757654	5757716	.	-	0	Parent=Os05t0193900-00
Chr05	irgsp1_rep	CDS	5757046	5757124	.	-	0	Parent=Os05t0193900-00
Chr05	irgsp1_rep	CDS	5756815	5756948	.	-	2	Parent=Os05t0193900-00
Chr05	irgsp1_rep	CDS	5756504	5756716	.	-	0	Parent=Os05t0193900-00
Chr05	irgsp1_rep	mRNA	5763848	5767422	.	+	.	ID=Os05t0194000-01;Name=Os05t0194000-01;Locus_id=Os05g0194000;Note=Similar to CRS2-associated factor 2%2C chloroplastic precursor.;Transcript_evidence=AK067336 (DDBJ%2C Best hit);ORF_evidence=NP_001105669.1 (RefSeq);NIAS_FLcDNA=J013100F05;TENOR=Os05t0194000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	5763848	5763849	.	+	.	Parent=Os05t0194000-01
Chr05	irgsp1_rep	CDS	5763850	5764218	.	+	0	Parent=Os05t0194000-01
Chr05	irgsp1_rep	CDS	5764301	5764423	.	+	0	Parent=Os05t0194000-01
Chr05	irgsp1_rep	three_prime_UTR	5764424	5764598	.	+	.	Parent=Os05t0194000-01
Chr05	irgsp1_rep	three_prime_UTR	5766033	5766085	.	+	.	Parent=Os05t0194000-01
Chr05	irgsp1_rep	three_prime_UTR	5767169	5767422	.	+	.	Parent=Os05t0194000-01
Chr05	irgsp1_rep	mRNA	5763848	5767413	.	+	.	ID=Os05t0194000-02;Name=Os05t0194000-02;Locus_id=Os05g0194000;Note=Similar to CRS2-associated factor 2%2C chloroplastic precursor.;Transcript_evidence=AK107561 (DDBJ%2C Best hit);ORF_evidence=NP_001105669.1 (RefSeq);NIAS_FLcDNA=002-130-B10;Expression=AK107561;TENOR=Os05t0194000-02;KEGG=Os05t0194000-02
Chr05	irgsp1_rep	five_prime_UTR	5763848	5763849	.	+	.	Parent=Os05t0194000-02
Chr05	irgsp1_rep	CDS	5763850	5764218	.	+	0	Parent=Os05t0194000-02
Chr05	irgsp1_rep	CDS	5764301	5764423	.	+	0	Parent=Os05t0194000-02
Chr05	irgsp1_rep	three_prime_UTR	5764424	5764598	.	+	.	Parent=Os05t0194000-02
Chr05	irgsp1_rep	three_prime_UTR	5766033	5767413	.	+	.	Parent=Os05t0194000-02
Chr05	irgsp1_rep	mRNA	5784144	5789558	.	-	.	ID=Os05t0194500-01;Name=Os05t0194500-01;Locus_id=Os05g0194500;CGSNL Gene Symbol=NAC85;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 85;Oryzabase Gene Symbol Synonym(s)=ONAC085%2C ONAC85;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 085%2C NAC domain-containing protein 85;Note=Similar to ANAC075.;Transcript_evidence=AK242227 (DDBJ%2C Best hit);ORF_evidence=B2CPX4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=J075175B09;Oryzabase=15852;TENOR=Os05t0194500-01;KEGG=Os05t0194500-01
Chr05	irgsp1_rep	five_prime_UTR	5789428	5789558	.	-	.	Parent=Os05t0194500-01
Chr05	irgsp1_rep	five_prime_UTR	5788058	5788074	.	-	.	Parent=Os05t0194500-01
Chr05	irgsp1_rep	CDS	5787932	5788057	.	-	0	Parent=Os05t0194500-01
Chr05	irgsp1_rep	CDS	5787601	5787781	.	-	0	Parent=Os05t0194500-01
Chr05	irgsp1_rep	CDS	5785633	5786135	.	-	2	Parent=Os05t0194500-01
Chr05	irgsp1_rep	CDS	5785136	5785310	.	-	0	Parent=Os05t0194500-01
Chr05	irgsp1_rep	CDS	5784459	5784520	.	-	2	Parent=Os05t0194500-01
Chr05	irgsp1_rep	three_prime_UTR	5784144	5784458	.	-	.	Parent=Os05t0194500-01
Chr05	irgsp1_rep	mRNA	5790217	5791479	.	+	.	ID=Os05t0194550-01;Name=Os05t0194550-01;Locus_id=Os05g0194550;Note=Conserved hypothetical protein.;Transcript_evidence=AK242091 (DDBJ%2C Best hit);ORF_evidence=NP_001174262.1 (RefSeq);NIAS_FLcDNA=J075140P14;TENOR=Os05t0194550-01;KEGG=Os05t0194550-01
Chr05	irgsp1_rep	five_prime_UTR	5790217	5791076	.	+	.	Parent=Os05t0194550-01
Chr05	irgsp1_rep	CDS	5791077	5791268	.	+	0	Parent=Os05t0194550-01
Chr05	irgsp1_rep	three_prime_UTR	5791269	5791479	.	+	.	Parent=Os05t0194550-01
Chr05	irgsp1_rep	mRNA	5791922	5797158	.	-	.	ID=Os05t0194600-01;Name=Os05t0194600-01;Locus_id=Os05g0194600;Note=Peptidase M22%2C O-sialoglycoprotein endopeptidase family protein.;Transcript_evidence=AK102487 (DDBJ%2C Best hit);ORF_evidence=NP_001141842.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: metalloendopeptidase activity (GO:0004222);InterPro=Peptidase M22%2C glycoprotease (IPR000905),Peptidase M22%2C glycoprotease%2C conserved site (IPR017860),Peptidase M22%2C glycoprotease%2C subgroup (IPR017861);NIAS_FLcDNA=J033094M21;Expression=AK102487;TENOR=Os05t0194600-01;KEGG=Os05t0194600-01 (EC:3.4.24.57)
Chr05	irgsp1_rep	five_prime_UTR	5797117	5797158	.	-	.	Parent=Os05t0194600-01
Chr05	irgsp1_rep	CDS	5796532	5797116	.	-	0	Parent=Os05t0194600-01
Chr05	irgsp1_rep	CDS	5793290	5793445	.	-	0	Parent=Os05t0194600-01
Chr05	irgsp1_rep	CDS	5792750	5793151	.	-	0	Parent=Os05t0194600-01
Chr05	irgsp1_rep	three_prime_UTR	5792749	5792749	.	-	.	Parent=Os05t0194600-01
Chr05	irgsp1_rep	three_prime_UTR	5791922	5792278	.	-	.	Parent=Os05t0194600-01
Chr05	irgsp1_rep	mRNA	5791964	5793038	.	-	.	ID=Os05t0194600-02;Name=Os05t0194600-02;Locus_id=Os05g0194600;Note=Similar to O-sialoglycoprotein endopeptidase.;Transcript_evidence=AK059566 (DDBJ%2C Best hit);ORF_evidence=NP_001141842.1 (RefSeq);NIAS_FLcDNA=001-029-H08;Expression=AK059566;TENOR=Os05t0194600-02;KEGG=Os05t0194600-02 (EC:3.4.24.57)
Chr05	irgsp1_rep	five_prime_UTR	5793038	5793038	.	-	.	Parent=Os05t0194600-02
Chr05	irgsp1_rep	CDS	5792750	5793037	.	-	0	Parent=Os05t0194600-02
Chr05	irgsp1_rep	three_prime_UTR	5792749	5792749	.	-	.	Parent=Os05t0194600-02
Chr05	irgsp1_rep	three_prime_UTR	5791964	5792278	.	-	.	Parent=Os05t0194600-02
Chr05	irgsp1_rep	mRNA	5814320	5815467	.	+	.	ID=Os05t0194900-01;Name=Os05t0194900-01;Locus_id=Os05g0194900;Oryzabase Gene Symbol Synonym(s)=OsPPi-PFK%2C OsPFK04%2C PFK04%2C PFK4;Oryzabase Gene Name Synonym(s)=Pyrophosphate-dependent phosphofructo-1-kinase%2C phosphofructokinase 4;Note=Similar to Pyrophosphate-fructose-6-phosphate 1-phosphotransferase-like protein (Pyrophosphate-dependent phosphofructo-1-kinase-like protein).;Transcript_evidence=AK071798 (DDBJ%2C Best hit);ORF_evidence=NP_001148080.1 (RefSeq);GO=Biological Process: glycolysis (GO:0006096),Cellular Component: 6-phosphofructokinase complex (GO:0005945),Molecular Function: 6-phosphofructokinase activity (GO:0003872);InterPro=Phosphofructokinase domain (IPR000023),Phosphofructokinase (IPR022953);NIAS_FLcDNA=J023112B14;Oryzabase=12478;Expression=AK071798;TENOR=Os05t0194900-01;KEGG=Os05t0194900-01
Chr05	irgsp1_rep	five_prime_UTR	5814320	5814320	.	+	.	Parent=Os05t0194900-01
Chr05	irgsp1_rep	CDS	5814321	5814956	.	+	0	Parent=Os05t0194900-01
Chr05	irgsp1_rep	CDS	5815041	5815271	.	+	0	Parent=Os05t0194900-01
Chr05	irgsp1_rep	three_prime_UTR	5815272	5815467	.	+	.	Parent=Os05t0194900-01
Chr05	irgsp1_rep	mRNA	5818086	5821365	.	+	.	ID=Os05t0195000-01;Name=Os05t0195000-01;Locus_id=Os05g0195000;Note=Non-protein coding transcript.;Transcript_evidence=AK108095 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-139-A07;TENOR=Os05t0195000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	exon	5818086	5818220	.	+	.	Parent=Os05t0195000-01
Chr05	irgsp1_rep	exon	5820492	5820623	.	+	.	Parent=Os05t0195000-01
Chr05	irgsp1_rep	exon	5821063	5821365	.	+	.	Parent=Os05t0195000-01
Chr05	irgsp1_rep	mRNA	5846045	5846623	.	-	.	ID=Os05t0195101-01;Name=Os05t0195101-01;Locus_id=Os05g0195101;Note=Non-protein coding transcript.;Transcript_evidence=AK063896 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-122-G11;TENOR=Os05t0195101-01
Chr05	irgsp1_rep	exon	5846045	5846623	.	-	.	Parent=Os05t0195101-01
Chr05	irgsp1_rep	mRNA	5846703	5848186	.	-	.	ID=Os05t0195200-01;Name=Os05t0195200-01;Locus_id=Os05g0195200;RAP-DB Gene Symbol Synonym(s)=C3H35%2C OsC3H35%2C OsTZF1%2C OsCCCH-Zn-3;RAP-DB Gene Name Synonym(s)=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 35%2C Zinc finger CCCH domain-containing protein 35%2C Protein DELAY OF THE ONSET OF SENESCENCE-like%2C Tandem zinc finger protein 1;CGSNL Gene Symbol=C3H35;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 35;Oryzabase Gene Symbol Synonym(s)=OsC3H35%2C OsTZF1%2C OsCCCH-Zn-3;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 35%2C Protein DELAY OF THE ONSET OF SENESCENCE-like%2C Tandem zinc finger protein 1;Note=CCCH-tandem zinc finger protein%2C Photomorphogenesis and ABA responses%2C Abiotic stress tolerance;Transcript_evidence=AK106392;ORF_evidence=Q6L4N4;GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=002-102-F01;Manual Curation=February 10%2C 2016;Literature_PMID=23296688,22572927;Oryzabase=8600;Expression=AK106392;TENOR=Os05t0195200-01;KEGG=Os05t0195200-01
Chr05	irgsp1_rep	five_prime_UTR	5848106	5848186	.	-	.	Parent=Os05t0195200-01
Chr05	irgsp1_rep	CDS	5846897	5848105	.	-	0	Parent=Os05t0195200-01
Chr05	irgsp1_rep	three_prime_UTR	5846703	5846896	.	-	.	Parent=Os05t0195200-01
Chr05	irgsp1_rep	mRNA	5856307	5856783	.	+	.	ID=Os05t0195500-01;Name=Os05t0195500-01;Locus_id=Os05g0195500;Note=Conserved hypothetical protein.;Transcript_evidence=AK072351 (DDBJ%2C Best hit);ORF_evidence=NP_001067898.1 (RefSeq);NIAS_FLcDNA=J023051A03;Expression=AK072351;TENOR=Os05t0195500-01;KEGG=Os05t0195500-01
Chr05	irgsp1_rep	five_prime_UTR	5856307	5856412	.	+	.	Parent=Os05t0195500-01
Chr05	irgsp1_rep	CDS	5856413	5856685	.	+	0	Parent=Os05t0195500-01
Chr05	irgsp1_rep	three_prime_UTR	5856686	5856783	.	+	.	Parent=Os05t0195500-01
Chr05	irgsp1_rep	mRNA	5870175	5873986	.	-	.	ID=Os05t0195700-01;Name=Os05t0195700-01;Locus_id=Os05g0195700;Note=Similar to Transcription factor MYBS2.;Transcript_evidence=AK065594 (DDBJ%2C Best hit);ORF_evidence=B9UK63 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=SANT domain%2C DNA binding (IPR001005),Zinc finger%2C CCHC-type (IPR001878),Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J013029P13;Expression=AK065594;TENOR=Os05t0195700-01;KEGG=Os05t0195700-01
Chr05	irgsp1_rep	five_prime_UTR	5872074	5873986	.	-	.	Parent=Os05t0195700-01
Chr05	irgsp1_rep	CDS	5871710	5872073	.	-	0	Parent=Os05t0195700-01
Chr05	irgsp1_rep	CDS	5871170	5871366	.	-	2	Parent=Os05t0195700-01
Chr05	irgsp1_rep	CDS	5870756	5871058	.	-	0	Parent=Os05t0195700-01
Chr05	irgsp1_rep	three_prime_UTR	5870175	5870755	.	-	.	Parent=Os05t0195700-01
Chr05	irgsp1_rep	mRNA	5870586	5872188	.	-	.	ID=Os05t0195700-02;Name=Os05t0195700-02;Locus_id=Os05g0195700;Note=Similar to Transcription factor MYBS2.;Transcript_evidence=AK061427 (DDBJ%2C Best hit);ORF_evidence=B9UK63 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=SANT domain%2C DNA binding (IPR001005),Zinc finger%2C CCHC-type (IPR001878),Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=006-306-H01;Expression=AK061427;TENOR=Os05t0195700-02;KEGG=Os05t0195700-02
Chr05	irgsp1_rep	five_prime_UTR	5872074	5872188	.	-	.	Parent=Os05t0195700-02
Chr05	irgsp1_rep	CDS	5871710	5872073	.	-	0	Parent=Os05t0195700-02
Chr05	irgsp1_rep	CDS	5871170	5871366	.	-	2	Parent=Os05t0195700-02
Chr05	irgsp1_rep	CDS	5870756	5871058	.	-	0	Parent=Os05t0195700-02
Chr05	irgsp1_rep	three_prime_UTR	5870586	5870755	.	-	.	Parent=Os05t0195700-02
Chr05	irgsp1_rep	mRNA	5898233	5898616	.	+	.	ID=Os05t0195901-00;Name=Os05t0195901-00;Locus_id=Os05g0195901;Note=Hypothetical gene.;Transcript_evidence=CT836399 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os05t0195901-00;KEGG=Os05t0195901-00
Chr05	irgsp1_rep	five_prime_UTR	5898233	5898233	.	+	.	Parent=Os05t0195901-00
Chr05	irgsp1_rep	CDS	5898234	5898482	.	+	0	Parent=Os05t0195901-00
Chr05	irgsp1_rep	three_prime_UTR	5898483	5898616	.	+	.	Parent=Os05t0195901-00
Chr05	irgsp1_rep	mRNA	5907893	5914096	.	+	.	ID=Os05t0196100-01;Name=Os05t0196100-01;Locus_id=Os05g0196100;CGSNL Gene Symbol=MRP14;CGSNL Gene Name=MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 14;Oryzabase Gene Symbol Synonym(s)=OsABCC14%2C OsMRP14%2C OsABCC14-1%2C OsABCC14-2;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCC subgroup member 14%2C multidrug resistance-associated protein 14;Note=Multidrug resistance associated protein 1.;Transcript_evidence=AK240722 (DDBJ%2C Best hit);ORF_evidence=NP_001105942.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);NIAS_FLcDNA=J043027G12;Oryzabase=11965;TENOR=Os05t0196100-01;KEGG=Os05t0196100-01
Chr05	irgsp1_rep	five_prime_UTR	5907893	5907945	.	+	.	Parent=Os05t0196100-01
Chr05	irgsp1_rep	CDS	5907946	5908009	.	+	0	Parent=Os05t0196100-01
Chr05	irgsp1_rep	CDS	5908224	5910226	.	+	2	Parent=Os05t0196100-01
Chr05	irgsp1_rep	CDS	5910329	5910649	.	+	0	Parent=Os05t0196100-01
Chr05	irgsp1_rep	CDS	5910738	5910824	.	+	0	Parent=Os05t0196100-01
Chr05	irgsp1_rep	CDS	5910898	5911500	.	+	0	Parent=Os05t0196100-01
Chr05	irgsp1_rep	CDS	5911597	5911761	.	+	0	Parent=Os05t0196100-01
Chr05	irgsp1_rep	CDS	5911858	5912152	.	+	0	Parent=Os05t0196100-01
Chr05	irgsp1_rep	CDS	5912237	5912451	.	+	2	Parent=Os05t0196100-01
Chr05	irgsp1_rep	CDS	5912538	5912843	.	+	0	Parent=Os05t0196100-01
Chr05	irgsp1_rep	CDS	5913117	5913180	.	+	0	Parent=Os05t0196100-01
Chr05	irgsp1_rep	CDS	5913301	5913540	.	+	2	Parent=Os05t0196100-01
Chr05	irgsp1_rep	CDS	5913673	5913770	.	+	2	Parent=Os05t0196100-01
Chr05	irgsp1_rep	three_prime_UTR	5913771	5914096	.	+	.	Parent=Os05t0196100-01
Chr05	irgsp1_rep	mRNA	5908223	5914265	.	+	.	ID=Os05t0196100-02;Name=Os05t0196100-02;Locus_id=Os05g0196100;CGSNL Gene Symbol=MRP14;CGSNL Gene Name=MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 14;Oryzabase Gene Symbol Synonym(s)=OsABCC14%2C OsMRP14%2C OsABCC14-1%2C OsABCC14-2;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCC subgroup member 14%2C multidrug resistance-associated protein 14;Note=Similar to multidrug resistance associated protein 1.;Transcript_evidence=AK287488 (DDBJ%2C Best hit);ORF_evidence=NP_001105942.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);NIAS_FLcDNA=J043029O04;Oryzabase=11965;TENOR=Os05t0196100-02;KEGG=Os05t0196100-02
Chr05	irgsp1_rep	CDS	5908223	5910226	.	+	0	Parent=Os05t0196100-02
Chr05	irgsp1_rep	CDS	5910329	5910649	.	+	0	Parent=Os05t0196100-02
Chr05	irgsp1_rep	CDS	5910738	5910824	.	+	0	Parent=Os05t0196100-02
Chr05	irgsp1_rep	CDS	5910898	5911500	.	+	0	Parent=Os05t0196100-02
Chr05	irgsp1_rep	CDS	5911597	5911761	.	+	0	Parent=Os05t0196100-02
Chr05	irgsp1_rep	CDS	5911858	5912152	.	+	0	Parent=Os05t0196100-02
Chr05	irgsp1_rep	CDS	5912237	5912451	.	+	2	Parent=Os05t0196100-02
Chr05	irgsp1_rep	CDS	5912538	5912843	.	+	0	Parent=Os05t0196100-02
Chr05	irgsp1_rep	CDS	5913117	5913180	.	+	0	Parent=Os05t0196100-02
Chr05	irgsp1_rep	CDS	5913301	5913540	.	+	2	Parent=Os05t0196100-02
Chr05	irgsp1_rep	CDS	5913673	5913770	.	+	2	Parent=Os05t0196100-02
Chr05	irgsp1_rep	three_prime_UTR	5913771	5914265	.	+	.	Parent=Os05t0196100-02
Chr05	irgsp1_rep	mRNA	5914193	5916931	.	-	.	ID=Os05t0196200-01;Name=Os05t0196200-01;Locus_id=Os05g0196200;Note=Similar to Pollen-specific protein SF21.;Transcript_evidence=AK240819 (DDBJ%2C Best hit);ORF_evidence=B6TAK7 (UniProt);InterPro=Ndr (IPR004142),Pollen specific protein SF21 (IPR015511);NIAS_FLcDNA=J065009N02;TENOR=Os05t0196200-01;KEGG=Os05t0196200-01
Chr05	irgsp1_rep	five_prime_UTR	5916871	5916931	.	-	.	Parent=Os05t0196200-01
Chr05	irgsp1_rep	CDS	5916793	5916870	.	-	0	Parent=Os05t0196200-01
Chr05	irgsp1_rep	CDS	5916114	5916213	.	-	0	Parent=Os05t0196200-01
Chr05	irgsp1_rep	CDS	5915918	5916015	.	-	2	Parent=Os05t0196200-01
Chr05	irgsp1_rep	CDS	5915709	5915797	.	-	0	Parent=Os05t0196200-01
Chr05	irgsp1_rep	CDS	5915556	5915616	.	-	1	Parent=Os05t0196200-01
Chr05	irgsp1_rep	CDS	5915381	5915467	.	-	0	Parent=Os05t0196200-01
Chr05	irgsp1_rep	CDS	5915220	5915297	.	-	0	Parent=Os05t0196200-01
Chr05	irgsp1_rep	CDS	5915072	5915128	.	-	0	Parent=Os05t0196200-01
Chr05	irgsp1_rep	CDS	5914926	5914981	.	-	0	Parent=Os05t0196200-01
Chr05	irgsp1_rep	CDS	5914706	5914841	.	-	1	Parent=Os05t0196200-01
Chr05	irgsp1_rep	CDS	5914392	5914613	.	-	0	Parent=Os05t0196200-01
Chr05	irgsp1_rep	three_prime_UTR	5914193	5914391	.	-	.	Parent=Os05t0196200-01
Chr05	irgsp1_rep	mRNA	5914411	5916215	.	+	.	ID=Os05t0196250-00;Name=Os05t0196250-00;Locus_id=Os05g0196250;Note=Non-protein coding transcript.;Transcript_evidence=tplb0040a08 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os05t0196250-00
Chr05	irgsp1_rep	exon	5914411	5914587	.	+	.	Parent=Os05t0196250-00
Chr05	irgsp1_rep	exon	5914688	5914851	.	+	.	Parent=Os05t0196250-00
Chr05	irgsp1_rep	exon	5914938	5915010	.	+	.	Parent=Os05t0196250-00
Chr05	irgsp1_rep	exon	5915194	5915276	.	+	.	Parent=Os05t0196250-00
Chr05	irgsp1_rep	exon	5915359	5915458	.	+	.	Parent=Os05t0196250-00
Chr05	irgsp1_rep	exon	5915546	5915614	.	+	.	Parent=Os05t0196250-00
Chr05	irgsp1_rep	exon	5915707	5915794	.	+	.	Parent=Os05t0196250-00
Chr05	irgsp1_rep	exon	5915915	5916015	.	+	.	Parent=Os05t0196250-00
Chr05	irgsp1_rep	exon	5916114	5916215	.	+	.	Parent=Os05t0196250-00
Chr05	irgsp1_rep	mRNA	5927515	5929945	.	-	.	ID=Os05t0196400-01;Name=Os05t0196400-01;Locus_id=Os05g0196400;Note=Conserved hypothetical protein.;Transcript_evidence=AK066966 (DDBJ%2C Best hit);ORF_evidence=B9GAG0 (UniProt);NIAS_FLcDNA=J013089C16;TENOR=Os05t0196400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	5929668	5929945	.	-	.	Parent=Os05t0196400-01
Chr05	irgsp1_rep	CDS	5929440	5929667	.	-	0	Parent=Os05t0196400-01
Chr05	irgsp1_rep	three_prime_UTR	5929347	5929439	.	-	.	Parent=Os05t0196400-01
Chr05	irgsp1_rep	three_prime_UTR	5928470	5929277	.	-	.	Parent=Os05t0196400-01
Chr05	irgsp1_rep	three_prime_UTR	5927515	5927725	.	-	.	Parent=Os05t0196400-01
Chr05	irgsp1_rep	mRNA	5927515	5929300	.	-	.	ID=Os05t0196400-02;Name=Os05t0196400-02;Locus_id=Os05g0196400;Note=Hypothetical gene.;Transcript_evidence=AK067290 (DDBJ%2C Best hit);ORF_evidence=B7E7A1 (UniProt);NIAS_FLcDNA=J013100E23;Expression=AK067290;TENOR=Os05t0196400-02;KEGG=Os05t0196400-02
Chr05	irgsp1_rep	five_prime_UTR	5928723	5929300	.	-	.	Parent=Os05t0196400-02
Chr05	irgsp1_rep	CDS	5928501	5928722	.	-	0	Parent=Os05t0196400-02
Chr05	irgsp1_rep	three_prime_UTR	5927515	5928500	.	-	.	Parent=Os05t0196400-02
Chr05	irgsp1_rep	mRNA	5940163	5946854	.	+	.	ID=Os05t0196500-01;Name=Os05t0196500-01;Locus_id=Os05g0196500;RAP-DB Gene Symbol Synonym(s)=JMJ703;RAP-DB Gene Name Synonym(s)=Jumonji 703;Oryzabase Gene Symbol Synonym(s)=JMJ703;Oryzabase Gene Name Synonym(s)=Jumonji 703;Note=H3K4-specific demethylase%2C JmjC domain-containing protein%2C Control of stem elongation%2C Control of transposon activity%2C Panicle development;Transcript_evidence=AK121381;ORF_evidence=Q53WJ1;GO=Cellular Component: nucleus (GO:0005634);InterPro=JmjN domain (IPR003349),JmjC domain (IPR003347),Zinc finger%2C C5HC2-type (IPR004198),FY-rich%2C N-terminal (IPR003888),FY-rich%2C C-terminal (IPR003889);NIAS_FLcDNA=J023127H13;Manual Curation=June 18%2C 2015;Literature_PMID=25957386,23357881,23319643;Oryzabase=11723;Expression=AK121381;TENOR=Os05t0196500-01;KEGG=Os05t0196500-01
Chr05	irgsp1_rep	five_prime_UTR	5940163	5940358	.	+	.	Parent=Os05t0196500-01
Chr05	irgsp1_rep	five_prime_UTR	5940761	5940762	.	+	.	Parent=Os05t0196500-01
Chr05	irgsp1_rep	CDS	5940763	5941089	.	+	0	Parent=Os05t0196500-01
Chr05	irgsp1_rep	CDS	5941191	5941271	.	+	0	Parent=Os05t0196500-01
Chr05	irgsp1_rep	CDS	5941356	5941433	.	+	0	Parent=Os05t0196500-01
Chr05	irgsp1_rep	CDS	5941539	5942006	.	+	0	Parent=Os05t0196500-01
Chr05	irgsp1_rep	CDS	5942358	5942582	.	+	0	Parent=Os05t0196500-01
Chr05	irgsp1_rep	CDS	5942707	5942868	.	+	0	Parent=Os05t0196500-01
Chr05	irgsp1_rep	CDS	5943418	5943786	.	+	0	Parent=Os05t0196500-01
Chr05	irgsp1_rep	CDS	5943866	5945306	.	+	0	Parent=Os05t0196500-01
Chr05	irgsp1_rep	CDS	5945514	5945617	.	+	2	Parent=Os05t0196500-01
Chr05	irgsp1_rep	CDS	5945696	5945893	.	+	0	Parent=Os05t0196500-01
Chr05	irgsp1_rep	CDS	5946191	5946454	.	+	0	Parent=Os05t0196500-01
Chr05	irgsp1_rep	three_prime_UTR	5946455	5946854	.	+	.	Parent=Os05t0196500-01
Chr05	irgsp1_rep	mRNA	5954551	5956291	.	-	.	ID=Os05t0196600-00;Name=Os05t0196600-00;Locus_id=Os05g0196600;CGSNL Gene Symbol=ACS3;CGSNL Gene Name=ACC SYNTHASE 3;Oryzabase Gene Symbol Synonym(s)=ACC3*%2C ACC3%2C OsACS3%2C OS-ACS3;Oryzabase Gene Name Synonym(s)=ACC synthase 3%2C ACC synthase-3%2C 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 3%2C 1-aminocyclopropane-1-carboxylic acid synthase 3;Note=Similar to 1-aminocyclopropane-1-carboxylic acid synthase.;Transcript_evidence=Y15739 (DDBJ);ORF_evidence=O24220 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Biological Process: 1-aminocyclopropane-1-carboxylate biosynthetic process (GO:0042218),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: 1-aminocyclopropane-1-carboxylate synthase activity (GO:0016847),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=1-aminocyclopropane-1-carboxylate synthase (IPR001176),Aminotransferases%2C class-I%2C pyridoxal-phosphate-binding site (IPR004838),Aminotransferase%2C class I/classII (IPR004839),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);Oryzabase=635;TENOR=Os05t0196600-00;KEGG=Os05t0196600-00
Chr05	irgsp1_rep	CDS	5956118	5956291	.	-	0	Parent=Os05t0196600-00
Chr05	irgsp1_rep	CDS	5955874	5955993	.	-	0	Parent=Os05t0196600-00
Chr05	irgsp1_rep	CDS	5955595	5955755	.	-	0	Parent=Os05t0196600-00
Chr05	irgsp1_rep	CDS	5954551	5955454	.	-	1	Parent=Os05t0196600-00
Chr05	irgsp1_rep	mRNA	5964855	5966356	.	+	.	ID=Os05t0196700-01;Name=Os05t0196700-01;Locus_id=Os05g0196700;Note=Conserved hypothetical protein.;Transcript_evidence=AK069743 (DDBJ%2C Best hit);ORF_evidence=B8AYX6 (UniProt);NIAS_FLcDNA=J023028G13;Expression=AK069743;TENOR=Os05t0196700-01;KEGG=Os05t0196700-01
Chr05	irgsp1_rep	five_prime_UTR	5964855	5964953	.	+	.	Parent=Os05t0196700-01
Chr05	irgsp1_rep	five_prime_UTR	5965089	5965200	.	+	.	Parent=Os05t0196700-01
Chr05	irgsp1_rep	CDS	5965201	5966208	.	+	0	Parent=Os05t0196700-01
Chr05	irgsp1_rep	three_prime_UTR	5966209	5966356	.	+	.	Parent=Os05t0196700-01
Chr05	irgsp1_rep	mRNA	5971951	5978628	.	+	.	ID=Os05t0196800-01;Name=Os05t0196800-01;Locus_id=Os05g0196800;RAP-DB Gene Symbol Synonym(s)=OsDGAT1-1;RAP-DB Gene Name Synonym(s)=diacylglycerol acyltransferase 1-1;Oryzabase Gene Symbol Synonym(s)=OsDGAT;Oryzabase Gene Name Synonym(s)=Diacylglycerol acyltransferase;Note=Type-1 diacylglycerol acyltransferase%2C Triacylglycerol accumulation%2C Storage lipid biosynthesis;Transcript_evidence=AY858584;ORF_evidence=Q5I396;GO=Biological Process: triglyceride biosynthetic process (GO:0019432),Molecular Function: diacylglycerol O-acyltransferase activity (GO:0004144),Molecular Function: O-acyltransferase activity (GO:0008374);InterPro=Membrane bound O-acyl transferase%2C MBOAT (IPR004299),Sterol O-acyltransferase%2C ACAT/DAG/ARE types (IPR014371),Diacylglycerol O-acyltransferase 1 (IPR027251);Manual Curation=October 23%2C 2020;Literature_PMID=33089420;Oryzabase=14674;TENOR=Os05t0196800-00;KEGG=Os05t0196800-00 (EC:2.3.1.20)
Chr05	irgsp1_rep	five_prime_UTR	5971951	5972018	.	+	.	Parent=Os05t0196800-01
Chr05	irgsp1_rep	CDS	5972019	5972438	.	+	0	Parent=Os05t0196800-01
Chr05	irgsp1_rep	CDS	5973167	5973247	.	+	0	Parent=Os05t0196800-01
Chr05	irgsp1_rep	CDS	5973358	5973431	.	+	0	Parent=Os05t0196800-01
Chr05	irgsp1_rep	CDS	5973521	5973596	.	+	1	Parent=Os05t0196800-01
Chr05	irgsp1_rep	CDS	5973808	5973875	.	+	0	Parent=Os05t0196800-01
Chr05	irgsp1_rep	CDS	5974105	5974228	.	+	1	Parent=Os05t0196800-01
Chr05	irgsp1_rep	CDS	5974630	5974728	.	+	0	Parent=Os05t0196800-01
Chr05	irgsp1_rep	CDS	5975492	5975593	.	+	0	Parent=Os05t0196800-01
Chr05	irgsp1_rep	CDS	5975675	5975811	.	+	0	Parent=Os05t0196800-01
Chr05	irgsp1_rep	CDS	5975984	5976065	.	+	1	Parent=Os05t0196800-01
Chr05	irgsp1_rep	CDS	5976198	5976218	.	+	0	Parent=Os05t0196800-01
Chr05	irgsp1_rep	CDS	5976584	5976646	.	+	0	Parent=Os05t0196800-01
Chr05	irgsp1_rep	CDS	5977596	5977643	.	+	0	Parent=Os05t0196800-01
Chr05	irgsp1_rep	CDS	5977749	5977811	.	+	0	Parent=Os05t0196800-01
Chr05	irgsp1_rep	CDS	5977971	5978024	.	+	0	Parent=Os05t0196800-01
Chr05	irgsp1_rep	CDS	5978106	5978210	.	+	0	Parent=Os05t0196800-01
Chr05	irgsp1_rep	three_prime_UTR	5978211	5978628	.	+	.	Parent=Os05t0196800-01
Chr05	irgsp1_rep	mRNA	5986015	5986963	.	+	.	ID=Os05t0197200-00;Name=Os05t0197200-00;Locus_id=Os05g0197200;CGSNL Gene Symbol=GLP5-1;CGSNL Gene Name=GERMIN-LIKE PROTEIN 5-1;Oryzabase Gene Symbol Synonym(s)=OsGLP5-1;Oryzabase Gene Name Synonym(s)=Germin-like protein 5-1;Note=Hypothetical conserved gene.;Transcript_evidence=CT836459 (DDBJ%2C Best hit);ORF_evidence=XP_002440759.1 (RefSeq);InterPro=Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710);Oryzabase=21427;TENOR=Os05t0197200-00;KEGG=Os05t0197200-00
Chr05	irgsp1_rep	five_prime_UTR	5986015	5986084	.	+	.	Parent=Os05t0197200-00
Chr05	irgsp1_rep	CDS	5986085	5986220	.	+	0	Parent=Os05t0197200-00
Chr05	irgsp1_rep	CDS	5986298	5986367	.	+	2	Parent=Os05t0197200-00
Chr05	irgsp1_rep	CDS	5986403	5986880	.	+	1	Parent=Os05t0197200-00
Chr05	irgsp1_rep	three_prime_UTR	5986881	5986963	.	+	.	Parent=Os05t0197200-00
Chr05	irgsp1_rep	mRNA	5996776	6000601	.	-	.	ID=Os05t0197300-01;Name=Os05t0197300-01;Locus_id=Os05g0197300;Note=IQ calmodulin-binding region domain containing protein.;Transcript_evidence=AK106389 (DDBJ%2C Best hit);ORF_evidence=NP_001151417.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);NIAS_FLcDNA=002-102-E10;Expression=AK106389;TENOR=Os05t0197300-01;KEGG=Os05t0197300-01
Chr05	irgsp1_rep	five_prime_UTR	6000442	6000601	.	-	.	Parent=Os05t0197300-01
Chr05	irgsp1_rep	five_prime_UTR	5999610	5999628	.	-	.	Parent=Os05t0197300-01
Chr05	irgsp1_rep	CDS	5999206	5999609	.	-	0	Parent=Os05t0197300-01
Chr05	irgsp1_rep	CDS	5998985	5999099	.	-	1	Parent=Os05t0197300-01
Chr05	irgsp1_rep	CDS	5998798	5998863	.	-	0	Parent=Os05t0197300-01
Chr05	irgsp1_rep	CDS	5998609	5998697	.	-	0	Parent=Os05t0197300-01
Chr05	irgsp1_rep	CDS	5998411	5998498	.	-	1	Parent=Os05t0197300-01
Chr05	irgsp1_rep	CDS	5998175	5998312	.	-	0	Parent=Os05t0197300-01
Chr05	irgsp1_rep	CDS	5997941	5998033	.	-	0	Parent=Os05t0197300-01
Chr05	irgsp1_rep	CDS	5997745	5997846	.	-	0	Parent=Os05t0197300-01
Chr05	irgsp1_rep	CDS	5996941	5997516	.	-	0	Parent=Os05t0197300-01
Chr05	irgsp1_rep	three_prime_UTR	5996776	5996940	.	-	.	Parent=Os05t0197300-01
Chr05	irgsp1_rep	mRNA	6035245	6035422	.	-	.	ID=Os05t0197500-00;Name=Os05t0197500-00;Locus_id=Os05g0197500;Note=Non-protein coding transcript.;Transcript_evidence=EU947580 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0197500-00
Chr05	irgsp1_rep	exon	6035245	6035422	.	-	.	Parent=Os05t0197500-00
Chr05	irgsp1_rep	mRNA	6046098	6048503	.	+	.	ID=Os05t0197900-01;Name=Os05t0197900-01;Locus_id=Os05g0197900;Note=Protein of unknown function DUF247%2C plant family protein.;Transcript_evidence=AK242446 (DDBJ%2C Best hit);ORF_evidence=NP_001174265.1 (RefSeq);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);NIAS_FLcDNA=J080094N23;TENOR=Os05t0197900-01;KEGG=Os05t0197900-01
Chr05	irgsp1_rep	five_prime_UTR	6046098	6046248	.	+	.	Parent=Os05t0197900-01
Chr05	irgsp1_rep	five_prime_UTR	6046495	6046664	.	+	.	Parent=Os05t0197900-01
Chr05	irgsp1_rep	CDS	6046665	6048326	.	+	0	Parent=Os05t0197900-01
Chr05	irgsp1_rep	three_prime_UTR	6048327	6048503	.	+	.	Parent=Os05t0197900-01
Chr05	irgsp1_rep	mRNA	6050142	6050885	.	+	.	ID=Os05t0198000-01;Name=Os05t0198000-01;Locus_id=Os05g0198000;Note=Conserved hypothetical protein.;Transcript_evidence=AK242129 (DDBJ%2C Best hit);ORF_evidence=A2Y1B1 (UniProt);NIAS_FLcDNA=J075148L15;TENOR=Os05t0198000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	6050142	6050147	.	+	.	Parent=Os05t0198000-01
Chr05	irgsp1_rep	CDS	6050148	6050364	.	+	0	Parent=Os05t0198000-01
Chr05	irgsp1_rep	CDS	6050467	6050603	.	+	2	Parent=Os05t0198000-01
Chr05	irgsp1_rep	three_prime_UTR	6050604	6050885	.	+	.	Parent=Os05t0198000-01
Chr05	irgsp1_rep	mRNA	6057365	6060278	.	-	.	ID=Os05t0198100-01;Name=Os05t0198100-01;Locus_id=Os05g0198100;Note=Protein of unknown function DUF247%2C plant domain containing protein.;Transcript_evidence=AK069149 (DDBJ%2C Best hit);ORF_evidence=A2Y1B2 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);NIAS_FLcDNA=J023007D16;TENOR=Os05t0198100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	6060092	6060278	.	-	.	Parent=Os05t0198100-01
Chr05	irgsp1_rep	five_prime_UTR	6059312	6059977	.	-	.	Parent=Os05t0198100-01
Chr05	irgsp1_rep	CDS	6058829	6059311	.	-	0	Parent=Os05t0198100-01
Chr05	irgsp1_rep	three_prime_UTR	6057365	6058828	.	-	.	Parent=Os05t0198100-01
Chr05	irgsp1_rep	mRNA	6085887	6087017	.	+	.	ID=Os05t0198200-00;Name=Os05t0198200-00;Locus_id=Os05g0198200;CGSNL Gene Symbol=GRX16;CGSNL Gene Name=GLUTAREDOXIN 16;Oryzabase Gene Symbol Synonym(s)=OsGRX16;Oryzabase Gene Name Synonym(s)=glutaredoxin 16;Note=Thioredoxin fold domain containing protein.;Transcript_evidence=CT837497 (DDBJ%2C Best hit);ORF_evidence=Q0DK35 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin (IPR002109),Glutaredoxin-like%2C plant II (IPR011905),Thioredoxin-like fold (IPR012336),Glutaredoxin subgroup (IPR014025);Oryzabase=13571;TENOR=Os05t0198200-00;KEGG=Os05t0198200-00
Chr05	irgsp1_rep	five_prime_UTR	6085887	6086020	.	+	.	Parent=Os05t0198200-00
Chr05	irgsp1_rep	five_prime_UTR	6086142	6086155	.	+	.	Parent=Os05t0198200-00
Chr05	irgsp1_rep	CDS	6086156	6086572	.	+	0	Parent=Os05t0198200-00
Chr05	irgsp1_rep	three_prime_UTR	6086579	6087017	.	+	.	Parent=Os05t0198200-00
Chr05	irgsp1_rep	mRNA	6090801	6094068	.	+	.	ID=Os05t0198400-01;Name=Os05t0198400-01;Locus_id=Os05g0198400;RAP-DB Gene Symbol Synonym(s)=OsZIP7%2C OsZIP7a;RAP-DB Gene Name Synonym(s)="Zrt%2C Irt-like protein 7";CGSNL Gene Symbol=ZIP7;CGSNL Gene Name=ZINC TRANSPORTER 7;Oryzabase Gene Symbol Synonym(s)=OsZIP7;Oryzabase Gene Name Synonym(s)=zinc transporter 7%2C Zrt-Irt-like protein 7%2C Zinc-regulated transporter 7;Note=Plasma membrane Zn transporter of the Zn-regulated%2C iron-regulated transporter-like protein (ZIP) family;Transcript_evidence=AK071272;ORF_evidence=Q6L8F7;GO=Biological Process: metal ion transport (GO:0030001),Biological Process: transmembrane transport (GO:0055085),Biological Process: zinc ion transmembrane transport (GO:0071577),Molecular Function: zinc ion transmembrane transporter activity (GO:0005385),Molecular Function: metal ion transmembrane transporter activity (GO:0046873),Cellular Component: membrane (GO:0016020),Cellular Component: integral component of membrane (GO:0016021);InterPro=Zinc/iron permease (IPR003689),Zinc/iron permease%2C fungal/plant (IPR004698);NIAS_FLcDNA=J023087M13;Manual Curation=July 23%2C 2018;Literature_PMID=30018622,18038191;Oryzabase=8378;Expression=AK071272;TENOR=Os05t0198400-01;KEGG=Os05t0198400-01;Subcellular location=plasma membrane (GO:0005886)
Chr05	irgsp1_rep	five_prime_UTR	6090801	6091031	.	+	.	Parent=Os05t0198400-01
Chr05	irgsp1_rep	CDS	6091032	6091068	.	+	0	Parent=Os05t0198400-01
Chr05	irgsp1_rep	CDS	6091145	6091806	.	+	2	Parent=Os05t0198400-01
Chr05	irgsp1_rep	CDS	6091896	6092045	.	+	0	Parent=Os05t0198400-01
Chr05	irgsp1_rep	CDS	6093286	6093591	.	+	0	Parent=Os05t0198400-01
Chr05	irgsp1_rep	three_prime_UTR	6093592	6094068	.	+	.	Parent=Os05t0198400-01
Chr05	irgsp1_rep	mRNA	6135077	6136663	.	+	.	ID=Os05t0198700-01;Name=Os05t0198700-01;Locus_id=Os05g0198700;Note=Similar to REX1 DNA Repair family protein.;Transcript_evidence=AK287942 (DDBJ%2C Best hit);ORF_evidence=NP_001148022.1 (RefSeq);GO=Biological Process: nucleotide-excision repair (GO:0006289),Molecular Function: DNA binding (GO:0003677);InterPro=Nucleotide excision repair%2C TFIIH%2C subunit TTDA (IPR009400);NIAS_FLcDNA=J075021G04;TENOR=Os05t0198700-01;KEGG=Os05t0198700-01
Chr05	irgsp1_rep	five_prime_UTR	6135077	6135318	.	+	.	Parent=Os05t0198700-01
Chr05	irgsp1_rep	five_prime_UTR	6135478	6135597	.	+	.	Parent=Os05t0198700-01
Chr05	irgsp1_rep	CDS	6135598	6135600	.	+	0	Parent=Os05t0198700-01
Chr05	irgsp1_rep	CDS	6136142	6136206	.	+	0	Parent=Os05t0198700-01
Chr05	irgsp1_rep	CDS	6136300	6136477	.	+	1	Parent=Os05t0198700-01
Chr05	irgsp1_rep	three_prime_UTR	6136478	6136663	.	+	.	Parent=Os05t0198700-01
Chr05	irgsp1_rep	mRNA	6157753	6158446	.	-	.	ID=Os05t0198950-00;Name=Os05t0198950-00;Locus_id=Os05g0198950;Note=Hypothetical gene.;Transcript_evidence=CT836382 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os05t0198950-00;KEGG=Os05t0198950-00
Chr05	irgsp1_rep	five_prime_UTR	6158445	6158446	.	-	.	Parent=Os05t0198950-00
Chr05	irgsp1_rep	CDS	6157854	6158444	.	-	0	Parent=Os05t0198950-00
Chr05	irgsp1_rep	three_prime_UTR	6157753	6157853	.	-	.	Parent=Os05t0198950-00
Chr05	irgsp1_rep	mRNA	6165002	6166269	.	-	.	ID=Os05t0199100-01;Name=Os05t0199100-01;Locus_id=Os05g0199100;Note=Similar to NDR1/HIN1-Like protein 2.;Transcript_evidence=AK069019 (DDBJ%2C Best hit);ORF_evidence=B6TX37 (UniProt);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=J013170B15;TENOR=Os05t0199100-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	6166162	6166269	.	-	.	Parent=Os05t0199100-01
Chr05	irgsp1_rep	CDS	6165280	6166161	.	-	0	Parent=Os05t0199100-01
Chr05	irgsp1_rep	three_prime_UTR	6165002	6165279	.	-	.	Parent=Os05t0199100-01
Chr05	irgsp1_rep	mRNA	6191144	6196093	.	-	.	ID=Os05t0199500-01;Name=Os05t0199500-01;Locus_id=Os05g0199500;Note=Glycosyl transferase%2C family 31 protein.;Transcript_evidence=AK063280 (DDBJ%2C Best hit);ORF_evidence=XP_002880742.1 (RefSeq);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Glycosyl transferase%2C family 31 (IPR002659);NIAS_FLcDNA=001-113-C10;Expression=AK063280;TENOR=Os05t0199500-01;KEGG=Os05t0199500-01
Chr05	irgsp1_rep	five_prime_UTR	6195972	6196093	.	-	.	Parent=Os05t0199500-01
Chr05	irgsp1_rep	CDS	6195484	6195971	.	-	0	Parent=Os05t0199500-01
Chr05	irgsp1_rep	CDS	6193853	6194002	.	-	1	Parent=Os05t0199500-01
Chr05	irgsp1_rep	CDS	6193683	6193765	.	-	1	Parent=Os05t0199500-01
Chr05	irgsp1_rep	CDS	6193501	6193600	.	-	2	Parent=Os05t0199500-01
Chr05	irgsp1_rep	CDS	6192926	6193039	.	-	1	Parent=Os05t0199500-01
Chr05	irgsp1_rep	CDS	6192469	6192611	.	-	1	Parent=Os05t0199500-01
Chr05	irgsp1_rep	CDS	6191712	6191806	.	-	2	Parent=Os05t0199500-01
Chr05	irgsp1_rep	three_prime_UTR	6191673	6191711	.	-	.	Parent=Os05t0199500-01
Chr05	irgsp1_rep	three_prime_UTR	6191144	6191579	.	-	.	Parent=Os05t0199500-01
Chr05	irgsp1_rep	mRNA	6191386	6196093	.	-	.	ID=Os05t0199500-02;Name=Os05t0199500-02;Locus_id=Os05g0199500;Note=Glycosyl transferase%2C family 31 protein.;Transcript_evidence=AK063319 (DDBJ%2C Best hit);ORF_evidence=XP_002880742.1 (RefSeq);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Glycosyl transferase%2C family 31 (IPR002659);NIAS_FLcDNA=001-113-G12;Expression=AK063319;TENOR=Os05t0199500-02;KEGG=Os05t0199500-02
Chr05	irgsp1_rep	five_prime_UTR	6195972	6196093	.	-	.	Parent=Os05t0199500-02
Chr05	irgsp1_rep	CDS	6195484	6195971	.	-	0	Parent=Os05t0199500-02
Chr05	irgsp1_rep	CDS	6193853	6194002	.	-	1	Parent=Os05t0199500-02
Chr05	irgsp1_rep	CDS	6193683	6193765	.	-	1	Parent=Os05t0199500-02
Chr05	irgsp1_rep	CDS	6193501	6193600	.	-	2	Parent=Os05t0199500-02
Chr05	irgsp1_rep	CDS	6192926	6193039	.	-	1	Parent=Os05t0199500-02
Chr05	irgsp1_rep	CDS	6192469	6192611	.	-	1	Parent=Os05t0199500-02
Chr05	irgsp1_rep	CDS	6191712	6191806	.	-	2	Parent=Os05t0199500-02
Chr05	irgsp1_rep	three_prime_UTR	6191386	6191711	.	-	.	Parent=Os05t0199500-02
Chr05	irgsp1_rep	mRNA	6198379	6200786	.	-	.	ID=Os05t0199700-01;Name=Os05t0199700-01;Locus_id=Os05g0199700;Note=Non-protein coding transcript.;Transcript_evidence=AK066568 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013074G03;TENOR=Os05t0199700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	exon	6199087	6200786	.	-	.	Parent=Os05t0199700-01
Chr05	irgsp1_rep	exon	6198379	6198655	.	-	.	Parent=Os05t0199700-01
Chr05	irgsp1_rep	mRNA	6206615	6208830	.	+	.	ID=Os05t0199800-01;Name=Os05t0199800-01;Locus_id=Os05g0199800;Oryzabase Gene Symbol Synonym(s)=OsbHLH028;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 028;Note=Similar to BHLH transcription activator Ivory seed.;Transcript_evidence=AK107675 (DDBJ%2C Best hit);ORF_evidence=B9FMZ2 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=002-132-A01;Oryzabase=15319;Expression=AK107675;TENOR=Os05t0199800-01;KEGG=Os05t0199800-01
Chr05	irgsp1_rep	five_prime_UTR	6206615	6206794	.	+	.	Parent=Os05t0199800-01
Chr05	irgsp1_rep	CDS	6206795	6206871	.	+	0	Parent=Os05t0199800-01
Chr05	irgsp1_rep	CDS	6207012	6207126	.	+	1	Parent=Os05t0199800-01
Chr05	irgsp1_rep	CDS	6207239	6207835	.	+	0	Parent=Os05t0199800-01
Chr05	irgsp1_rep	CDS	6208259	6208708	.	+	0	Parent=Os05t0199800-01
Chr05	irgsp1_rep	three_prime_UTR	6208709	6208830	.	+	.	Parent=Os05t0199800-01
Chr05	irgsp1_rep	mRNA	6233918	6237913	.	-	.	ID=Os05t0200100-01;Name=Os05t0200100-01;Locus_id=Os05g0200100;Note=Similar to Thioredoxin-like 6.;Transcript_evidence=AK061208 (DDBJ%2C Best hit);ORF_evidence=B6UHV8 (UniProt);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Thioredoxin (IPR005746),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766),Thioredoxin%2C conserved site (IPR017937);NIAS_FLcDNA=006-210-C04;TENOR=Os05t0200100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	6237738	6237913	.	-	.	Parent=Os05t0200100-01
Chr05	irgsp1_rep	CDS	6237564	6237737	.	-	0	Parent=Os05t0200100-01
Chr05	irgsp1_rep	CDS	6236613	6236798	.	-	0	Parent=Os05t0200100-01
Chr05	irgsp1_rep	CDS	6234732	6234896	.	-	0	Parent=Os05t0200100-01
Chr05	irgsp1_rep	CDS	6234119	6234244	.	-	0	Parent=Os05t0200100-01
Chr05	irgsp1_rep	three_prime_UTR	6233918	6234118	.	-	.	Parent=Os05t0200100-01
Chr05	irgsp1_rep	mRNA	6233918	6237869	.	-	.	ID=Os05t0200100-02;Name=Os05t0200100-02;Locus_id=Os05g0200100;Note=Similar to Thioredoxin-like 6.;Transcript_evidence=AK099199 (DDBJ%2C Best hit);ORF_evidence=B6UHV8 (UniProt);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Thioredoxin (IPR005746),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766),Thioredoxin%2C conserved site (IPR017937);NIAS_FLcDNA=J023120C07;TENOR=Os05t0200100-02
Chr05	irgsp1_rep	five_prime_UTR	6237738	6237869	.	-	.	Parent=Os05t0200100-02
Chr05	irgsp1_rep	CDS	6237564	6237737	.	-	0	Parent=Os05t0200100-02
Chr05	irgsp1_rep	CDS	6236613	6236798	.	-	0	Parent=Os05t0200100-02
Chr05	irgsp1_rep	CDS	6234732	6234896	.	-	0	Parent=Os05t0200100-02
Chr05	irgsp1_rep	CDS	6234119	6234244	.	-	0	Parent=Os05t0200100-02
Chr05	irgsp1_rep	three_prime_UTR	6233918	6234118	.	-	.	Parent=Os05t0200100-02
Chr05	irgsp1_rep	mRNA	6240164	6240665	.	+	.	ID=Os05t0200160-00;Name=Os05t0200160-00;Locus_id=Os05g0200160;Note=Hypothetical gene.;Transcript_evidence=CT836341 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os05t0200160-00;KEGG=Os05t0200160-00
Chr05	irgsp1_rep	CDS	6240164	6240393	.	+	0	Parent=Os05t0200160-00
Chr05	irgsp1_rep	CDS	6240431	6240665	.	+	1	Parent=Os05t0200160-00
Chr05	irgsp1_rep	mRNA	6255334	6257922	.	-	.	ID=Os05t0200280-01;Name=Os05t0200280-01;Locus_id=Os05g0200280;Note=Similar to prenylated rab acceptor family protein.;Transcript_evidence=AK287738 (DDBJ%2C Best hit);ORF_evidence=NP_001150209.1 (RefSeq);InterPro=Prenylated rab acceptor PRA1 (IPR004895);NIAS_FLcDNA=J065144I17;TENOR=Os05t0200280-01;KEGG=Os05t0200280-01
Chr05	irgsp1_rep	five_prime_UTR	6257821	6257922	.	-	.	Parent=Os05t0200280-01
Chr05	irgsp1_rep	CDS	6257239	6257820	.	-	0	Parent=Os05t0200280-01
Chr05	irgsp1_rep	three_prime_UTR	6257236	6257238	.	-	.	Parent=Os05t0200280-01
Chr05	irgsp1_rep	three_prime_UTR	6255334	6255750	.	-	.	Parent=Os05t0200280-01
Chr05	irgsp1_rep	mRNA	6267638	6268798	.	-	.	ID=Os05t0200340-00;Name=Os05t0200340-00;Locus_id=Os05g0200340;Note=Hypothetical gene.;Transcript_evidence=CT836404 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os05t0200340-00;KEGG=Os05t0200340-00
Chr05	irgsp1_rep	five_prime_UTR	6268524	6268798	.	-	.	Parent=Os05t0200340-00
Chr05	irgsp1_rep	CDS	6267888	6268523	.	-	0	Parent=Os05t0200340-00
Chr05	irgsp1_rep	three_prime_UTR	6267638	6267887	.	-	.	Parent=Os05t0200340-00
Chr05	irgsp1_rep	mRNA	6269370	6273074	.	+	.	ID=Os05t0200400-01;Name=Os05t0200400-01;Locus_id=Os05g0200400;Note=Similar to CytoChrome P450 CYP90D10.b.;Transcript_evidence=AK241521 (DDBJ%2C Best hit);ORF_evidence=B6T0I8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J065170L14;TENOR=Os05t0200400-01;KEGG=Os05t0200400-01 (EC:1.14.-.-)
Chr05	irgsp1_rep	CDS	6269370	6269438	.	+	0	Parent=Os05t0200400-01
Chr05	irgsp1_rep	CDS	6269555	6269821	.	+	0	Parent=Os05t0200400-01
Chr05	irgsp1_rep	CDS	6271102	6271191	.	+	0	Parent=Os05t0200400-01
Chr05	irgsp1_rep	CDS	6271717	6272051	.	+	0	Parent=Os05t0200400-01
Chr05	irgsp1_rep	CDS	6272692	6272779	.	+	1	Parent=Os05t0200400-01
Chr05	irgsp1_rep	three_prime_UTR	6272780	6273074	.	+	.	Parent=Os05t0200400-01
Chr05	irgsp1_rep	mRNA	6273311	6282541	.	-	.	ID=Os05t0200500-02;Name=Os05t0200500-02;Locus_id=Os05g0200500;Note=Similar to Casein kinase-like protein.;Transcript_evidence=AK100357 (DDBJ%2C Best hit),AK072116 (DDBJ%2C Best hit);ORF_evidence=D8V7I8 (UniProt);NIAS_FLcDNA=J023083K12,J013126I12;Expression=AK100357;TENOR=Os05t0200500-02;KEGG=Os05t0200500-02
Chr05	irgsp1_rep	five_prime_UTR	6282278	6282541	.	-	.	Parent=Os05t0200500-02
Chr05	irgsp1_rep	CDS	6282188	6282277	.	-	0	Parent=Os05t0200500-02
Chr05	irgsp1_rep	CDS	6280249	6280383	.	-	0	Parent=Os05t0200500-02
Chr05	irgsp1_rep	CDS	6280088	6280161	.	-	0	Parent=Os05t0200500-02
Chr05	irgsp1_rep	CDS	6279863	6279932	.	-	1	Parent=Os05t0200500-02
Chr05	irgsp1_rep	CDS	6277528	6277583	.	-	0	Parent=Os05t0200500-02
Chr05	irgsp1_rep	CDS	6277369	6277440	.	-	1	Parent=Os05t0200500-02
Chr05	irgsp1_rep	CDS	6277178	6277272	.	-	1	Parent=Os05t0200500-02
Chr05	irgsp1_rep	CDS	6277042	6277108	.	-	2	Parent=Os05t0200500-02
Chr05	irgsp1_rep	CDS	6276814	6276943	.	-	1	Parent=Os05t0200500-02
Chr05	irgsp1_rep	CDS	6276507	6276725	.	-	0	Parent=Os05t0200500-02
Chr05	irgsp1_rep	CDS	6276142	6276284	.	-	0	Parent=Os05t0200500-02
Chr05	irgsp1_rep	CDS	6275899	6276073	.	-	1	Parent=Os05t0200500-02
Chr05	irgsp1_rep	CDS	6275629	6275719	.	-	0	Parent=Os05t0200500-02
Chr05	irgsp1_rep	CDS	6274407	6274564	.	-	2	Parent=Os05t0200500-02
Chr05	irgsp1_rep	CDS	6274047	6274235	.	-	0	Parent=Os05t0200500-02
Chr05	irgsp1_rep	CDS	6273913	6273972	.	-	0	Parent=Os05t0200500-02
Chr05	irgsp1_rep	three_prime_UTR	6273311	6273912	.	-	.	Parent=Os05t0200500-02
Chr05	irgsp1_rep	mRNA	6274046	6276219	.	+	.	ID=Os05t0200601-00;Name=Os05t0200601-00;Locus_id=Os05g0200601;Note=Hypothetical protein.;Transcript_evidence=BT016369 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0200601-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	6274046	6274052	.	+	.	Parent=Os05t0200601-00
Chr05	irgsp1_rep	CDS	6274053	6274250	.	+	0	Parent=Os05t0200601-00
Chr05	irgsp1_rep	CDS	6274420	6274482	.	+	0	Parent=Os05t0200601-00
Chr05	irgsp1_rep	three_prime_UTR	6274483	6274546	.	+	.	Parent=Os05t0200601-00
Chr05	irgsp1_rep	three_prime_UTR	6275609	6275689	.	+	.	Parent=Os05t0200601-00
Chr05	irgsp1_rep	three_prime_UTR	6275871	6276066	.	+	.	Parent=Os05t0200601-00
Chr05	irgsp1_rep	three_prime_UTR	6276135	6276219	.	+	.	Parent=Os05t0200601-00
Chr05	irgsp1_rep	mRNA	6292207	6293478	.	-	.	ID=Os05t0200700-01;Name=Os05t0200700-01;Locus_id=Os05g0200700;Note=Conserved hypothetical protein.;Transcript_evidence=AK110596 (DDBJ%2C Best hit);ORF_evidence=A2Y1C5 (UniProt);NIAS_FLcDNA=002-168-F12;Expression=AK110596;TENOR=Os05t0200700-01;KEGG=Os05t0200700-01
Chr05	irgsp1_rep	five_prime_UTR	6293295	6293478	.	-	.	Parent=Os05t0200700-01
Chr05	irgsp1_rep	CDS	6292542	6293294	.	-	0	Parent=Os05t0200700-01
Chr05	irgsp1_rep	three_prime_UTR	6292207	6292541	.	-	.	Parent=Os05t0200700-01
Chr05	irgsp1_rep	mRNA	6292845	6293697	.	+	.	ID=Os05t0201300-01;Name=Os05t0201300-01;Locus_id=Os05g0201300;Note=Hypothetical gene.;Transcript_evidence=AK110599 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-168-G03;Expression=AK110599;TENOR=Os05t0201300-01;KEGG=Os05t0201300-01
Chr05	irgsp1_rep	CDS	6292845	6293378	.	+	0	Parent=Os05t0201300-01
Chr05	irgsp1_rep	three_prime_UTR	6293379	6293697	.	+	.	Parent=Os05t0201300-01
Chr05	irgsp1_rep	mRNA	6309428	6309805	.	+	.	ID=Os05t0201333-00;Name=Os05t0201333-00;Locus_id=Os05g0201333;Note=Hypothetical protein.;Transcript_evidence=AK372466 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0201333-00
Chr05	irgsp1_rep	five_prime_UTR	6309428	6309429	.	+	.	Parent=Os05t0201333-00
Chr05	irgsp1_rep	CDS	6309430	6309805	.	+	0	Parent=Os05t0201333-00
Chr05	irgsp1_rep	mRNA	6333107	6333718	.	+	.	ID=Os05t0201700-00;Name=Os05t0201700-00;Locus_id=Os05g0201700;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6L4Q2 (UniProt);InterPro=Polyketide cyclase/dehydrase (IPR019587),START-like domain (IPR023393);TENOR=Os05t0201700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	6333107	6333718	.	+	0	Parent=Os05t0201700-00
Chr05	irgsp1_rep	mRNA	6344746	6345363	.	+	.	ID=Os05t0202200-00;Name=Os05t0202200-00;Locus_id=Os05g0202200;Note=Hypothetical protein.;Transcript_evidence=BT016249 (DDBJ);ORF_evidence=GeneMark;TENOR=Os05t0202200-00
Chr05	irgsp1_rep	five_prime_UTR	6344746	6344832	.	+	.	Parent=Os05t0202200-00
Chr05	irgsp1_rep	CDS	6344833	6345132	.	+	0	Parent=Os05t0202200-00
Chr05	irgsp1_rep	CDS	6345206	6345316	.	+	0	Parent=Os05t0202200-00
Chr05	irgsp1_rep	three_prime_UTR	6345317	6345363	.	+	.	Parent=Os05t0202200-00
Chr05	irgsp1_rep	mRNA	6348995	6349943	.	+	.	ID=Os05t0202300-01;Name=Os05t0202300-01;Locus_id=Os05g0202300;Note=Similar to laChrymatory factor synthase.;Transcript_evidence=AK109150 (DDBJ%2C Best hit);ORF_evidence=NP_001151021.1 (RefSeq);InterPro=Polyketide cyclase/dehydrase (IPR019587),START-like domain (IPR023393);NIAS_FLcDNA=002-155-F09;Expression=AK109150;TENOR=Os05t0202300-01;KEGG=Os05t0202300-01
Chr05	irgsp1_rep	five_prime_UTR	6348995	6349043	.	+	.	Parent=Os05t0202300-01
Chr05	irgsp1_rep	CDS	6349044	6349718	.	+	0	Parent=Os05t0202300-01
Chr05	irgsp1_rep	three_prime_UTR	6349719	6349943	.	+	.	Parent=Os05t0202300-01
Chr05	irgsp1_rep	mRNA	6359965	6363348	.	-	.	ID=Os05t0202500-01;Name=Os05t0202500-01;Locus_id=Os05g0202500;Note=Conserved hypothetical protein.;Transcript_evidence=AK068507 (DDBJ%2C Best hit);ORF_evidence=B9FN00 (UniProt);NIAS_FLcDNA=J013154C12;TENOR=Os05t0202500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	6362892	6363348	.	-	.	Parent=Os05t0202500-01
Chr05	irgsp1_rep	five_prime_UTR	6362408	6362409	.	-	.	Parent=Os05t0202500-01
Chr05	irgsp1_rep	CDS	6362149	6362407	.	-	0	Parent=Os05t0202500-01
Chr05	irgsp1_rep	CDS	6361763	6362076	.	-	2	Parent=Os05t0202500-01
Chr05	irgsp1_rep	three_prime_UTR	6361612	6361762	.	-	.	Parent=Os05t0202500-01
Chr05	irgsp1_rep	three_prime_UTR	6361406	6361498	.	-	.	Parent=Os05t0202500-01
Chr05	irgsp1_rep	three_prime_UTR	6361220	6361312	.	-	.	Parent=Os05t0202500-01
Chr05	irgsp1_rep	three_prime_UTR	6360793	6361137	.	-	.	Parent=Os05t0202500-01
Chr05	irgsp1_rep	three_prime_UTR	6360651	6360716	.	-	.	Parent=Os05t0202500-01
Chr05	irgsp1_rep	three_prime_UTR	6360484	6360567	.	-	.	Parent=Os05t0202500-01
Chr05	irgsp1_rep	three_prime_UTR	6360333	6360398	.	-	.	Parent=Os05t0202500-01
Chr05	irgsp1_rep	three_prime_UTR	6360148	6360207	.	-	.	Parent=Os05t0202500-01
Chr05	irgsp1_rep	three_prime_UTR	6359965	6360027	.	-	.	Parent=Os05t0202500-01
Chr05	irgsp1_rep	mRNA	6376518	6379391	.	-	.	ID=Os05t0202550-00;Name=Os05t0202550-00;Locus_id=Os05g0202550;Note=Hypothetical conserved gene.;Transcript_evidence=CU406865 (DDBJ%2C Secondary hit);ORF_evidence=NP_001177065.1 (RefSeq);TENOR=Os05t0202550-00;KEGG=Os05t0202550-00
Chr05	irgsp1_rep	five_prime_UTR	6378994	6379391	.	-	.	Parent=Os05t0202550-00
Chr05	irgsp1_rep	CDS	6378293	6378378	.	-	0	Parent=Os05t0202550-00
Chr05	irgsp1_rep	CDS	6376848	6376860	.	-	1	Parent=Os05t0202550-00
Chr05	irgsp1_rep	three_prime_UTR	6376518	6376847	.	-	.	Parent=Os05t0202550-00
Chr05	irgsp1_rep	mRNA	6380423	6380983	.	+	.	ID=Os05t0202600-00;Name=Os05t0202600-00;Locus_id=Os05g0202600;Note=Protein of unknown function DUF1677%2C plant domain containing protein.;Transcript_evidence=EU954525 (DDBJ);ORF_evidence=Q6L4P7 (UniProt);InterPro=Protein of unknown function DUF1677%2C plant (IPR012876);TENOR=Os05t0202600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	6380423	6380983	.	+	0	Parent=Os05t0202600-00
Chr05	irgsp1_rep	mRNA	6393899	6396069	.	+	.	ID=Os05t0202800-00;Name=Os05t0202800-00;Locus_id=Os05g0202800;CGSNL Gene Symbol=MTI3B;CGSNL Gene Name=METALLOTHIONEIN 3B;Oryzabase Gene Symbol Synonym(s)=MTd%2C OsMT-I-3b%2C OsMT3b%2C MT-I-3b%2C MT3b;Note=Similar to Metallothionein-like protein 3B.;Transcript_evidence=CT836440 (DDBJ%2C Best hit);ORF_evidence=A3B0Y1 (UniProt);Oryzabase=13841;TENOR=Os05t0202800-00;KEGG=Os05t0202800-00
Chr05	irgsp1_rep	five_prime_UTR	6393899	6394160	.	+	.	Parent=Os05t0202800-00
Chr05	irgsp1_rep	CDS	6394161	6394219	.	+	0	Parent=Os05t0202800-00
Chr05	irgsp1_rep	CDS	6395724	6395823	.	+	1	Parent=Os05t0202800-00
Chr05	irgsp1_rep	three_prime_UTR	6395824	6396069	.	+	.	Parent=Os05t0202800-00
Chr05	irgsp1_rep	mRNA	6405755	6406491	.	-	.	ID=Os05t0203000-01;Name=Os05t0203000-01;Locus_id=Os05g0203000;CGSNL Gene Symbol=RALF21;CGSNL Gene Name=RAPID ALKALIZATION FACTOR 21;Oryzabase Gene Symbol Synonym(s)=OsRALF-21%2C OsRALF21%2C RALF-21;Oryzabase Gene Name Synonym(s)=Rapid alkalization factor 21;Note=Similar to RALF.;Transcript_evidence=AK107744 (DDBJ%2C Best hit);ORF_evidence=NP_001152442.1 (RefSeq);InterPro=Rapid ALkalinization Factor (IPR008801);NIAS_FLcDNA=002-132-H02;Oryzabase=21125;TENOR=Os05t0203000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	6406411	6406491	.	-	.	Parent=Os05t0203000-01
Chr05	irgsp1_rep	CDS	6405997	6406410	.	-	0	Parent=Os05t0203000-01
Chr05	irgsp1_rep	three_prime_UTR	6405755	6405996	.	-	.	Parent=Os05t0203000-01
Chr05	irgsp1_rep	mRNA	6415879	6417082	.	+	.	ID=Os05t0203300-00;Name=Os05t0203300-00;Locus_id=Os05g0203300;Note=Hypothetical protein.;Transcript_evidence=tplb0036h19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0203300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	6415879	6416382	.	+	.	Parent=Os05t0203300-00
Chr05	irgsp1_rep	CDS	6416383	6416417	.	+	0	Parent=Os05t0203300-00
Chr05	irgsp1_rep	CDS	6416605	6416950	.	+	1	Parent=Os05t0203300-00
Chr05	irgsp1_rep	three_prime_UTR	6416951	6417082	.	+	.	Parent=Os05t0203300-00
Chr05	irgsp1_rep	mRNA	6415879	6417129	.	-	.	ID=Os05t0203400-00;Name=Os05t0203400-00;Locus_id=Os05g0203400;Note=Hypothetical conserved gene.;Transcript_evidence=AK366489 (DDBJ);ORF_evidence=XP_002285634.1 (RefSeq);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);TENOR=Os05t0203400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	6416637	6417129	.	-	0	Parent=Os05t0203400-00
Chr05	irgsp1_rep	CDS	6415933	6416444	.	-	2	Parent=Os05t0203400-00
Chr05	irgsp1_rep	three_prime_UTR	6415879	6415932	.	-	.	Parent=Os05t0203400-00
Chr05	irgsp1_rep	mRNA	6419463	6422962	.	+	.	ID=Os05t0203500-01;Name=Os05t0203500-01;Locus_id=Os05g0203500;Note=Myb/SANT-like domain domain containing protein.;Transcript_evidence=AK064593 (DDBJ%2C Best hit);ORF_evidence=B9FN03 (UniProt);InterPro=Myb/SANT-like domain (IPR024752);NIAS_FLcDNA=002-112-G07;TENOR=Os05t0203500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	6419463	6419770	.	+	.	Parent=Os05t0203500-01
Chr05	irgsp1_rep	CDS	6419771	6419795	.	+	0	Parent=Os05t0203500-01
Chr05	irgsp1_rep	CDS	6421508	6421881	.	+	2	Parent=Os05t0203500-01
Chr05	irgsp1_rep	CDS	6421958	6422650	.	+	0	Parent=Os05t0203500-01
Chr05	irgsp1_rep	three_prime_UTR	6422651	6422962	.	+	.	Parent=Os05t0203500-01
Chr05	irgsp1_rep	mRNA	6446886	6458100	.	-	.	ID=Os05t0203800-01;Name=Os05t0203800-01;Locus_id=Os05g0203800;CGSNL Gene Symbol=MADS58;CGSNL Gene Name=MADS BOX GENE 58;Oryzabase Gene Symbol Synonym(s)=OsMADS58;Oryzabase Gene Name Synonym(s)=MADS box gene58%2C MADS box gene 58%2C MADS-box transcription factor 58;Note=Similar to MADS box protein.;Transcript_evidence=AK111723 (DDBJ%2C Best hit);ORF_evidence=D3U2H4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box (IPR002100),Transcription factor%2C K-box (IPR002487);NIAS_FLcDNA=J023027E19;Oryzabase=6752;Expression=AK111723;TENOR=Os05t0203800-01;KEGG=Os05t0203800-01
Chr05	irgsp1_rep	five_prime_UTR	6457998	6458100	.	-	.	Parent=Os05t0203800-01
Chr05	irgsp1_rep	CDS	6457950	6457997	.	-	0	Parent=Os05t0203800-01
Chr05	irgsp1_rep	CDS	6457133	6457392	.	-	0	Parent=Os05t0203800-01
Chr05	irgsp1_rep	CDS	6448983	6449064	.	-	1	Parent=Os05t0203800-01
Chr05	irgsp1_rep	CDS	6448382	6448443	.	-	0	Parent=Os05t0203800-01
Chr05	irgsp1_rep	CDS	6448188	6448287	.	-	1	Parent=Os05t0203800-01
Chr05	irgsp1_rep	CDS	6448047	6448088	.	-	0	Parent=Os05t0203800-01
Chr05	irgsp1_rep	CDS	6447904	6447945	.	-	0	Parent=Os05t0203800-01
Chr05	irgsp1_rep	CDS	6447658	6447719	.	-	0	Parent=Os05t0203800-01
Chr05	irgsp1_rep	CDS	6447151	6447154	.	-	1	Parent=Os05t0203800-01
Chr05	irgsp1_rep	three_prime_UTR	6446886	6447150	.	-	.	Parent=Os05t0203800-01
Chr05	irgsp1_rep	mRNA	6446886	6458100	.	-	.	ID=Os05t0203800-02;Name=Os05t0203800-02;Locus_id=Os05g0203800;RAP-DB Gene Symbol Synonym(s)=MADS58%2C OsMADS58;RAP-DB Gene Name Synonym(s)=MADS BOX GENE 58%2C MADS box gene58%2C MADS box gene 58%2C MADS-box transcription factor 58;CGSNL Gene Symbol=MADS58;CGSNL Gene Name=MADS BOX GENE 58;Oryzabase Gene Symbol Synonym(s)=OsMADS58;Oryzabase Gene Name Synonym(s)=MADS box gene58%2C MADS box gene 58%2C MADS-box transcription factor 58;Note=Transcription factor%2C Floral organ development;Transcript_evidence=AB232157;ORF_evidence=Q2V0P1-1;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein dimerization activity (GO:0046983),Cellular Component: nucleus (GO:0005634);InterPro=Transcription factor%2C MADS-box (IPR002100),Transcription factor%2C K-box (IPR002487);Manual Curation=May 20%2C 2015;Literature_PMID=16326928;Oryzabase=6752
Chr05	irgsp1_rep	five_prime_UTR	6457998	6458100	.	-	.	Parent=Os05t0203800-02
Chr05	irgsp1_rep	CDS	6457950	6457997	.	-	0	Parent=Os05t0203800-02
Chr05	irgsp1_rep	CDS	6457133	6457392	.	-	0	Parent=Os05t0203800-02
Chr05	irgsp1_rep	CDS	6448983	6449064	.	-	1	Parent=Os05t0203800-02
Chr05	irgsp1_rep	CDS	6448382	6448443	.	-	0	Parent=Os05t0203800-02
Chr05	irgsp1_rep	CDS	6448188	6448287	.	-	1	Parent=Os05t0203800-02
Chr05	irgsp1_rep	CDS	6448047	6448088	.	-	0	Parent=Os05t0203800-02
Chr05	irgsp1_rep	CDS	6447904	6447945	.	-	0	Parent=Os05t0203800-02
Chr05	irgsp1_rep	CDS	6447548	6447719	.	-	0	Parent=Os05t0203800-02
Chr05	irgsp1_rep	CDS	6447144	6447154	.	-	2	Parent=Os05t0203800-02
Chr05	irgsp1_rep	three_prime_UTR	6446886	6447143	.	-	.	Parent=Os05t0203800-02
Chr05	irgsp1_rep	mRNA	6468141	6476455	.	-	.	ID=Os05t0203900-01;Name=Os05t0203900-01;Locus_id=Os05g0203900;Note=Conserved hypothetical protein.;Transcript_evidence=AK069504 (DDBJ%2C Best hit);ORF_evidence=B9FN06 (UniProt);NIAS_FLcDNA=J023019E20;Expression=AK069504;TENOR=Os05t0203900-01;KEGG=Os05t0203900-01
Chr05	irgsp1_rep	five_prime_UTR	6476365	6476455	.	-	.	Parent=Os05t0203900-01
Chr05	irgsp1_rep	CDS	6476342	6476364	.	-	0	Parent=Os05t0203900-01
Chr05	irgsp1_rep	CDS	6475896	6476241	.	-	1	Parent=Os05t0203900-01
Chr05	irgsp1_rep	CDS	6468629	6470527	.	-	0	Parent=Os05t0203900-01
Chr05	irgsp1_rep	three_prime_UTR	6468376	6468628	.	-	.	Parent=Os05t0203900-01
Chr05	irgsp1_rep	three_prime_UTR	6468141	6468312	.	-	.	Parent=Os05t0203900-01
Chr05	irgsp1_rep	mRNA	6470985	6472028	.	+	.	ID=Os05t0203912-00;Name=Os05t0203912-00;Locus_id=Os05g0203912;Note=Similar to Histone deacetylase.;Transcript_evidence=tplb0047a04 (Wheat FLcDNA);ORF_evidence=A2Z0V8 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);TENOR=Os05t0203912-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	6470985	6472028	.	+	0	Parent=Os05t0203912-00
Chr05	irgsp1_rep	mRNA	6497932	6498388	.	-	.	ID=Os05t0204163-00;Name=Os05t0204163-00;Locus_id=Os05g0204163;Note=Conserved hypothetical protein.;Transcript_evidence=BT087035 (DDBJ);ORF_evidence=Q6ATK2 (UniProt);TENOR=Os05t0204163-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	6498017	6498388	.	-	0	Parent=Os05t0204163-00
Chr05	irgsp1_rep	three_prime_UTR	6497932	6498016	.	-	.	Parent=Os05t0204163-00
Chr05	irgsp1_rep	mRNA	6514746	6517280	.	+	.	ID=Os05t0204600-01;Name=Os05t0204600-01;Locus_id=Os05g0204600;RAP-DB Gene Symbol Synonym(s)=OsBBX14%2C OsDBB3b;RAP-DB Gene Name Synonym(s)=B-box-containing protein 14%2C DOUBLE B-BOX zinc finger gene 3b%2C DOUBLE B-BOX 3b;Oryzabase Gene Symbol Synonym(s)=OsBBX14%2C BBX14%2C OsDBB3b%2C DBB3b;Oryzabase Gene Name Synonym(s)=B-box-containing protein 14%2C DOUBLE B-BOX zinc finger gene 3b%2C DOUBLE B-BOX 3b%2C B-box protein 14;Note=B-box zinc finger protein%2C Repressor of flowering under long and short-day conditions;Transcript_evidence=AK106865;ORF_evidence=Q6ATK0;GO=Molecular Function: zinc ion binding (GO:0008270),Cellular Component: intracellular (GO:0005622);InterPro=B-box-type zinc finger (IPR000315);NIAS_FLcDNA=002-118-C11;Manual Curation=April 22%2C 2016;Literature_PMID=27095397;Oryzabase=11645;Expression=AK106865;TENOR=Os05t0204600-01;KEGG=Os05t0204600-01
Chr05	irgsp1_rep	five_prime_UTR	6514746	6514869	.	+	.	Parent=Os05t0204600-01
Chr05	irgsp1_rep	CDS	6514870	6515202	.	+	0	Parent=Os05t0204600-01
Chr05	irgsp1_rep	CDS	6515280	6515795	.	+	0	Parent=Os05t0204600-01
Chr05	irgsp1_rep	CDS	6516196	6516483	.	+	0	Parent=Os05t0204600-01
Chr05	irgsp1_rep	three_prime_UTR	6516484	6517280	.	+	.	Parent=Os05t0204600-01
Chr05	irgsp1_rep	mRNA	6529795	6537307	.	+	.	ID=Os05t0204900-01;Name=Os05t0204900-01;Locus_id=Os05g0204900;Oryzabase Gene Symbol Synonym(s)=OsPP74;Oryzabase Gene Name Synonym(s)=Protein phosphatase 74;Note=Similar to Type 5 protein serine/threonine phosphatase 62 kDa isoform.;Transcript_evidence=AK101918 (DDBJ%2C Best hit),AK102966 (DDBJ%2C Best hit);ORF_evidence=NP_001150042.1 (RefSeq);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: nucleus (GO:0005634),Cellular Component: cytoplasm (GO:0005737),Molecular Function: phosphoprotein phosphatase activity (GO:0004721),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: metal ion binding (GO:0046872);InterPro=Tetratricopeptide TPR-1 (IPR001440),Metallophosphoesterase domain (IPR004843),Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (IPR006186),Protein phosphatase 5 (IPR011236),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Serine/threonine phosphatase%2C PPP5 (IPR013235),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J033071J02,J033115I22;Oryzabase=18644;TENOR=Os05t0204900-01
Chr05	irgsp1_rep	five_prime_UTR	6529795	6529984	.	+	.	Parent=Os05t0204900-01
Chr05	irgsp1_rep	five_prime_UTR	6532549	6532606	.	+	.	Parent=Os05t0204900-01
Chr05	irgsp1_rep	CDS	6532607	6532679	.	+	0	Parent=Os05t0204900-01
Chr05	irgsp1_rep	CDS	6533304	6533473	.	+	2	Parent=Os05t0204900-01
Chr05	irgsp1_rep	CDS	6533546	6533617	.	+	0	Parent=Os05t0204900-01
Chr05	irgsp1_rep	CDS	6533806	6533956	.	+	0	Parent=Os05t0204900-01
Chr05	irgsp1_rep	CDS	6534622	6534730	.	+	2	Parent=Os05t0204900-01
Chr05	irgsp1_rep	CDS	6534819	6534936	.	+	1	Parent=Os05t0204900-01
Chr05	irgsp1_rep	CDS	6535127	6535274	.	+	0	Parent=Os05t0204900-01
Chr05	irgsp1_rep	CDS	6535433	6535681	.	+	2	Parent=Os05t0204900-01
Chr05	irgsp1_rep	CDS	6536122	6536247	.	+	2	Parent=Os05t0204900-01
Chr05	irgsp1_rep	CDS	6536387	6536487	.	+	2	Parent=Os05t0204900-01
Chr05	irgsp1_rep	CDS	6536641	6536715	.	+	0	Parent=Os05t0204900-01
Chr05	irgsp1_rep	CDS	6537073	6537132	.	+	0	Parent=Os05t0204900-01
Chr05	irgsp1_rep	three_prime_UTR	6537133	6537307	.	+	.	Parent=Os05t0204900-01
Chr05	irgsp1_rep	mRNA	6533841	6537264	.	+	.	ID=Os05t0204900-02;Name=Os05t0204900-02;Locus_id=Os05g0204900;Oryzabase Gene Symbol Synonym(s)=OsPP74;Oryzabase Gene Name Synonym(s)=Protein phosphatase 74;Note=Similar to serine/threonine-protein phosphatase 5.;Transcript_evidence=AK111940 (DDBJ%2C Best hit);ORF_evidence=NP_001150042.1 (RefSeq);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: nucleus (GO:0005634),Cellular Component: cytoplasm (GO:0005737),Molecular Function: phosphoprotein phosphatase activity (GO:0004721),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: metal ion binding (GO:0046872);InterPro=Metallophosphoesterase domain (IPR004843),Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (IPR006186),Protein phosphatase 5 (IPR011236),Serine/threonine phosphatase%2C PPP5 (IPR013235);NIAS_FLcDNA=001-021-C04;Oryzabase=18644;Expression=AK111940;TENOR=Os05t0204900-02;KEGG=Os05t0204900-02 (EC:3.1.3.16)
Chr05	irgsp1_rep	five_prime_UTR	6533841	6533841	.	+	.	Parent=Os05t0204900-02
Chr05	irgsp1_rep	CDS	6533842	6533956	.	+	0	Parent=Os05t0204900-02
Chr05	irgsp1_rep	CDS	6534622	6534730	.	+	2	Parent=Os05t0204900-02
Chr05	irgsp1_rep	CDS	6534819	6534936	.	+	1	Parent=Os05t0204900-02
Chr05	irgsp1_rep	CDS	6535127	6535274	.	+	0	Parent=Os05t0204900-02
Chr05	irgsp1_rep	CDS	6535433	6535681	.	+	2	Parent=Os05t0204900-02
Chr05	irgsp1_rep	CDS	6536122	6536247	.	+	2	Parent=Os05t0204900-02
Chr05	irgsp1_rep	CDS	6536387	6536487	.	+	2	Parent=Os05t0204900-02
Chr05	irgsp1_rep	CDS	6536641	6536715	.	+	0	Parent=Os05t0204900-02
Chr05	irgsp1_rep	CDS	6537073	6537132	.	+	0	Parent=Os05t0204900-02
Chr05	irgsp1_rep	three_prime_UTR	6537133	6537264	.	+	.	Parent=Os05t0204900-02
Chr05	irgsp1_rep	mRNA	6536386	6537279	.	-	.	ID=Os05t0204950-00;Name=Os05t0204950-00;Locus_id=Os05g0204950;Note=Non-protein coding transcript.;Transcript_evidence=BT016916 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0204950-00
Chr05	irgsp1_rep	exon	6537057	6537279	.	-	.	Parent=Os05t0204950-00
Chr05	irgsp1_rep	exon	6536614	6536701	.	-	.	Parent=Os05t0204950-00
Chr05	irgsp1_rep	exon	6536386	6536462	.	-	.	Parent=Os05t0204950-00
Chr05	irgsp1_rep	mRNA	6539979	6540536	.	-	.	ID=Os05t0205000-01;Name=Os05t0205000-01;Locus_id=Os05g0205000;CGSNL Gene Symbol=NIP1%3B3;CGSNL Gene Name=NOD26 LIKE INTRINSIC PROTEIN 1%3B3;Oryzabase Gene Symbol Synonym(s)=OsNIP1%3B3%2C NIP1-3%2C OsNIP1.3%2C NIP1.3;Oryzabase Gene Name Synonym(s)=Aquaporin NIP1-3%2C NOD26-like intrinsic protein 1-3;Note=Similar to NOD26-like membrane integral protein ZmNIP1-1.;Transcript_evidence=AK062320 (DDBJ%2C Best hit);ORF_evidence=Q0DK16 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Aquaporin-like (IPR023271);NIAS_FLcDNA=001-101-C09;Oryzabase=8519;Expression=AK062320;TENOR=Os05t0205000-01;KEGG=Os05t0205000-01
Chr05	irgsp1_rep	five_prime_UTR	6540357	6540536	.	-	.	Parent=Os05t0205000-01
Chr05	irgsp1_rep	CDS	6540090	6540356	.	-	0	Parent=Os05t0205000-01
Chr05	irgsp1_rep	three_prime_UTR	6539979	6540089	.	-	.	Parent=Os05t0205000-01
Chr05	irgsp1_rep	mRNA	6543376	6544643	.	-	.	ID=Os05t0205050-00;Name=Os05t0205050-00;Locus_id=Os05g0205050;Note=Isoform 2 of Aquaporin NIP1-3.;Transcript_evidence=Q0DK16-2 (UniProt);ORF_evidence=Q0DK16-2 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Major intrinsic protein%2C conserved site (IPR022357),Aquaporin-like (IPR023271);TENOR=Os05t0205050-00
Chr05	irgsp1_rep	CDS	6544479	6544643	.	-	0	Parent=Os05t0205050-00
Chr05	irgsp1_rep	CDS	6543376	6543858	.	-	0	Parent=Os05t0205050-00
Chr05	irgsp1_rep	mRNA	6546758	6547978	.	-	.	ID=Os05t0205100-01;Name=Os05t0205100-01;Locus_id=Os05g0205100;Note=NLI interacting factor domain containing protein.;Transcript_evidence=AK111332 (DDBJ%2C Best hit);ORF_evidence=E5GC25 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: phosphatase activity (GO:0016791);InterPro=NLI interacting factor (IPR004274),Dullard phosphatase domain%2C eukaryotic (IPR011948),HAD-like domain (IPR023214);NIAS_FLcDNA=002-181-E05;Expression=AK111332;TENOR=Os05t0205100-01;KEGG=Os05t0205100-01
Chr05	irgsp1_rep	five_prime_UTR	6547963	6547978	.	-	.	Parent=Os05t0205100-01
Chr05	irgsp1_rep	CDS	6547039	6547962	.	-	0	Parent=Os05t0205100-01
Chr05	irgsp1_rep	three_prime_UTR	6546758	6547038	.	-	.	Parent=Os05t0205100-01
Chr05	irgsp1_rep	mRNA	6559752	6560051	.	+	.	ID=Os05t0205400-00;Name=Os05t0205400-00;Locus_id=Os05g0205400;Oryzabase Gene Symbol Synonym(s)=OsCEP12%2C CEP12;Oryzabase Gene Name Synonym(s)=C-TERMINALLY ENCODED PEPTIDE 12;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5W6J0 (UniProt);Oryzabase=20960;TENOR=Os05t0205400-00
Chr05	irgsp1_rep	CDS	6559752	6560051	.	+	0	Parent=Os05t0205400-00
Chr05	irgsp1_rep	mRNA	6576138	6576687	.	+	.	ID=Os05t0206000-01;Name=Os05t0206000-01;Locus_id=Os05g0206000;Oryzabase Gene Symbol Synonym(s)=OsCEP14%2C CEP14;Oryzabase Gene Name Synonym(s)=C-TERMINALLY ENCODED PEPTIDE 14;Note=Conserved hypothetical protein.;Transcript_evidence=AK107740 (DDBJ%2C Best hit);ORF_evidence=A2Y1G1 (UniProt);NIAS_FLcDNA=002-132-G08;Oryzabase=20962;Expression=AK107740;TENOR=Os05t0206000-01;KEGG=Os05t0206000-01
Chr05	irgsp1_rep	five_prime_UTR	6576138	6576236	.	+	.	Parent=Os05t0206000-01
Chr05	irgsp1_rep	CDS	6576237	6576557	.	+	0	Parent=Os05t0206000-01
Chr05	irgsp1_rep	three_prime_UTR	6576558	6576687	.	+	.	Parent=Os05t0206000-01
Chr05	irgsp1_rep	mRNA	6582138	6582888	.	+	.	ID=Os05t0206100-00;Name=Os05t0206100-00;Locus_id=Os05g0206100;Oryzabase Gene Symbol Synonym(s)=OsCEP11%2C CEP11;Oryzabase Gene Name Synonym(s)=C-TERMINALLY ENCODED PEPTIDE 11;Note=Conserved hypothetical protein.;Transcript_evidence=CT836392 (DDBJ%2C Best hit);ORF_evidence=NP_001174274.1 (RefSeq);Oryzabase=20959;TENOR=Os05t0206100-00;KEGG=Os05t0206100-00
Chr05	irgsp1_rep	five_prime_UTR	6582138	6582234	.	+	.	Parent=Os05t0206100-00
Chr05	irgsp1_rep	CDS	6582235	6582549	.	+	0	Parent=Os05t0206100-00
Chr05	irgsp1_rep	three_prime_UTR	6582550	6582888	.	+	.	Parent=Os05t0206100-00
Chr05	irgsp1_rep	mRNA	6590736	6595036	.	+	.	ID=Os05t0206200-01;Name=Os05t0206200-01;Locus_id=Os05g0206200;Note=Similar to Myb-like DNA-binding domain containing protein.;Transcript_evidence=AK071166 (DDBJ%2C Best hit);ORF_evidence=B6TAG8 (UniProt);NIAS_FLcDNA=J023079L10;Expression=AK071166;TENOR=Os05t0206200-01;KEGG=Os05t0206200-01
Chr05	irgsp1_rep	five_prime_UTR	6590736	6590862	.	+	.	Parent=Os05t0206200-01
Chr05	irgsp1_rep	CDS	6590863	6591007	.	+	0	Parent=Os05t0206200-01
Chr05	irgsp1_rep	CDS	6593479	6593576	.	+	2	Parent=Os05t0206200-01
Chr05	irgsp1_rep	CDS	6593778	6593804	.	+	0	Parent=Os05t0206200-01
Chr05	irgsp1_rep	three_prime_UTR	6593805	6593849	.	+	.	Parent=Os05t0206200-01
Chr05	irgsp1_rep	three_prime_UTR	6593937	6595036	.	+	.	Parent=Os05t0206200-01
Chr05	irgsp1_rep	mRNA	6606005	6606262	.	-	.	ID=Os05t0206600-00;Name=Os05t0206600-00;Locus_id=Os05g0206600;Note=Non-protein coding transcript.;Transcript_evidence=CT836463 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os05t0206600-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	exon	6606005	6606262	.	-	.	Parent=Os05t0206600-00
Chr05	irgsp1_rep	mRNA	6606211	6607490	.	+	.	ID=Os05t0206800-00;Name=Os05t0206800-00;Locus_id=Os05g0206800;Note=Hypothetical protein.;Transcript_evidence=AK358087 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0206800-00
Chr05	irgsp1_rep	five_prime_UTR	6606211	6606385	.	+	.	Parent=Os05t0206800-00
Chr05	irgsp1_rep	CDS	6606386	6606736	.	+	0	Parent=Os05t0206800-00
Chr05	irgsp1_rep	three_prime_UTR	6606737	6607490	.	+	.	Parent=Os05t0206800-00
Chr05	irgsp1_rep	mRNA	6646893	6648344	.	+	.	ID=Os05t0207200-00;Name=Os05t0207200-00;Locus_id=Os05g0207200;Note=Similar to rf1 protein.;Transcript_evidence=EU972540 (DDBJ);ORF_evidence=NP_001151863.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os05t0207200-00;KEGG=Os05t0207200-00
Chr05	irgsp1_rep	five_prime_UTR	6646893	6646921	.	+	.	Parent=Os05t0207200-00
Chr05	irgsp1_rep	CDS	6646922	6648325	.	+	0	Parent=Os05t0207200-00
Chr05	irgsp1_rep	three_prime_UTR	6648326	6648344	.	+	.	Parent=Os05t0207200-00
Chr05	irgsp1_rep	mRNA	6649558	6651815	.	+	.	ID=Os05t0207300-01;Name=Os05t0207300-01;Locus_id=Os05g0207300;Oryzabase Gene Symbol Synonym(s)=OsRPL5%2C RPL5;Oryzabase Gene Name Synonym(s)=ribosomal protein L5%2C ribosomal protein large subunit 5;Note=Similar to 60S ribosomal protein L11-2 (L16). Splice isoform 2.;Transcript_evidence=AK070605 (DDBJ%2C Best hit);ORF_evidence=Q0DK10 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L5 (IPR002132),Ribosomal protein L5%2C conserved site (IPR020929),Ribosomal protein L5 domain (IPR022803);NIAS_FLcDNA=J023055B20;Oryzabase=22191;Expression=AK070605;TENOR=Os05t0207300-01;KEGG=Os05t0207300-01
Chr05	irgsp1_rep	five_prime_UTR	6649558	6649628	.	+	.	Parent=Os05t0207300-01
Chr05	irgsp1_rep	CDS	6649629	6649631	.	+	0	Parent=Os05t0207300-01
Chr05	irgsp1_rep	CDS	6649774	6649881	.	+	0	Parent=Os05t0207300-01
Chr05	irgsp1_rep	CDS	6650079	6650121	.	+	0	Parent=Os05t0207300-01
Chr05	irgsp1_rep	CDS	6650229	6650424	.	+	2	Parent=Os05t0207300-01
Chr05	irgsp1_rep	CDS	6651322	6651520	.	+	1	Parent=Os05t0207300-01
Chr05	irgsp1_rep	three_prime_UTR	6651521	6651815	.	+	.	Parent=Os05t0207300-01
Chr05	irgsp1_rep	mRNA	6649773	6651625	.	-	.	ID=Os05t0207350-00;Name=Os05t0207350-00;Locus_id=Os05g0207350;Note=Hypothetical gene.;Transcript_evidence=BT017969 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0207350-00;KEGG=Os05t0207350-00
Chr05	irgsp1_rep	five_prime_UTR	6651578	6651625	.	-	.	Parent=Os05t0207350-00
Chr05	irgsp1_rep	CDS	6651337	6651577	.	-	0	Parent=Os05t0207350-00
Chr05	irgsp1_rep	CDS	6650281	6650438	.	-	2	Parent=Os05t0207350-00
Chr05	irgsp1_rep	three_prime_UTR	6650204	6650280	.	-	.	Parent=Os05t0207350-00
Chr05	irgsp1_rep	three_prime_UTR	6649773	6649888	.	-	.	Parent=Os05t0207350-00
Chr05	irgsp1_rep	mRNA	6652760	6656383	.	-	.	ID=Os05t0207400-02;Name=Os05t0207400-02;Locus_id=Os05g0207400;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK070191 (DDBJ%2C Best hit),AK104023 (DDBJ%2C Best hit);ORF_evidence=A2Y1H0 (UniProt);NIAS_FLcDNA=J023042J24,001-009-B05;Expression=AK070191;TENOR=Os05t0207400-02;KEGG=Os05t0207400-02
Chr05	irgsp1_rep	five_prime_UTR	6656208	6656383	.	-	.	Parent=Os05t0207400-02
Chr05	irgsp1_rep	CDS	6655924	6656207	.	-	0	Parent=Os05t0207400-02
Chr05	irgsp1_rep	CDS	6652956	6653178	.	-	1	Parent=Os05t0207400-02
Chr05	irgsp1_rep	three_prime_UTR	6652760	6652955	.	-	.	Parent=Os05t0207400-02
Chr05	irgsp1_rep	mRNA	6657481	6661493	.	-	.	ID=Os05t0207500-01;Name=Os05t0207500-01;Locus_id=Os05g0207500;RAP-DB Gene Symbol Synonym(s)=GSK2%2C Os GSK2%2C OsGSK2%2C Os BIN2%2C OsBIN2;RAP-DB Gene Name Synonym(s)=GSK3/SHAGGY-Like Kinase 2%2C GSK3/SHAGGY-LIKE KINASE2;CGSNL Gene Symbol=BIN2;CGSNL Gene Name=BRASSINOSTEROID-INSENSITIVE 2;Oryzabase Gene Symbol Synonym(s)=GSK2%2C Os GSK2%2C OsGSK2%2C Os BIN2%2C OsBIN2%2C BIN2/GSK2%2C OsSK22/OsGSK7%2C OsSK22%2C OsGSK7%2C SK22%2C GSK7%2C OsSK22/GSK2;Oryzabase Gene Name Synonym(s)=GSK3/SHAGGY-Like Kinase 2%2C GSK3/SHAGGY-LIKE KINASE2%2C BRASSINOSTEROID-INSENSITIVE2%2C GSK3/SHAGGY-Like Kinase 22%2C GSK3-like Kinase 7%2C Shaggy/GSK3-like kinase 22;Note=GSK3/SHAGGY-like kinase%2C Brassinosteroid signaling;Transcript_evidence=AK102147;ORF_evidence=Q60EZ2;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine/threonine/dual specificity protein kinase%2C catalytic  domain (IPR002290),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J033086C10;Manual Curation=September 2%2C 2014;Literature_PMID=22685166;Oryzabase=10942;TENOR=Os05t0207500-01;KEGG=Os05t0207500-01 (EC:2.7.11.26)
Chr05	irgsp1_rep	five_prime_UTR	6661378	6661493	.	-	.	Parent=Os05t0207500-01
Chr05	irgsp1_rep	CDS	6661303	6661377	.	-	0	Parent=Os05t0207500-01
Chr05	irgsp1_rep	CDS	6661110	6661211	.	-	0	Parent=Os05t0207500-01
Chr05	irgsp1_rep	CDS	6660615	6660674	.	-	0	Parent=Os05t0207500-01
Chr05	irgsp1_rep	CDS	6660249	6660521	.	-	0	Parent=Os05t0207500-01
Chr05	irgsp1_rep	CDS	6660089	6660163	.	-	0	Parent=Os05t0207500-01
Chr05	irgsp1_rep	CDS	6659951	6660007	.	-	0	Parent=Os05t0207500-01
Chr05	irgsp1_rep	CDS	6659463	6659603	.	-	0	Parent=Os05t0207500-01
Chr05	irgsp1_rep	CDS	6659299	6659349	.	-	0	Parent=Os05t0207500-01
Chr05	irgsp1_rep	CDS	6659116	6659211	.	-	0	Parent=Os05t0207500-01
Chr05	irgsp1_rep	CDS	6658848	6658931	.	-	0	Parent=Os05t0207500-01
Chr05	irgsp1_rep	CDS	6658223	6658324	.	-	0	Parent=Os05t0207500-01
Chr05	irgsp1_rep	CDS	6658019	6658111	.	-	0	Parent=Os05t0207500-01
Chr05	irgsp1_rep	three_prime_UTR	6657481	6658018	.	-	.	Parent=Os05t0207500-01
Chr05	irgsp1_rep	mRNA	6657927	6661392	.	+	.	ID=Os05t0207600-00;Name=Os05t0207600-00;Locus_id=Os05g0207600;Note=Hypothetical protein.;Transcript_evidence=tplb0034j24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0207600-00
Chr05	irgsp1_rep	five_prime_UTR	6657927	6658111	.	+	.	Parent=Os05t0207600-00
Chr05	irgsp1_rep	five_prime_UTR	6658223	6658308	.	+	.	Parent=Os05t0207600-00
Chr05	irgsp1_rep	five_prime_UTR	6658833	6658922	.	+	.	Parent=Os05t0207600-00
Chr05	irgsp1_rep	five_prime_UTR	6659103	6659231	.	+	.	Parent=Os05t0207600-00
Chr05	irgsp1_rep	five_prime_UTR	6659426	6659590	.	+	.	Parent=Os05t0207600-00
Chr05	irgsp1_rep	five_prime_UTR	6660027	6660161	.	+	.	Parent=Os05t0207600-00
Chr05	irgsp1_rep	five_prime_UTR	6660247	6660395	.	+	.	Parent=Os05t0207600-00
Chr05	irgsp1_rep	CDS	6660396	6660520	.	+	0	Parent=Os05t0207600-00
Chr05	irgsp1_rep	CDS	6660614	6660662	.	+	1	Parent=Os05t0207600-00
Chr05	irgsp1_rep	CDS	6661097	6661153	.	+	0	Parent=Os05t0207600-00
Chr05	irgsp1_rep	three_prime_UTR	6661154	6661211	.	+	.	Parent=Os05t0207600-00
Chr05	irgsp1_rep	three_prime_UTR	6661303	6661392	.	+	.	Parent=Os05t0207600-00
Chr05	irgsp1_rep	mRNA	6666869	6671949	.	-	.	ID=Os05t0207700-01;Name=Os05t0207700-01;Locus_id=Os05g0207700;Note=Similar to Serine/threonine-protein kinase PBS1 (EC 2.7.1.37) (AvrPphB susceptible protein 1).;Transcript_evidence=AK102665 (DDBJ%2C Best hit);ORF_evidence=B4FFH0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033101K23;Expression=AK102665;TENOR=Os05t0207700-01;KEGG=Os05t0207700-01 (EC:2.7.1.37)
Chr05	irgsp1_rep	five_prime_UTR	6671858	6671949	.	-	.	Parent=Os05t0207700-01
Chr05	irgsp1_rep	CDS	6671339	6671857	.	-	0	Parent=Os05t0207700-01
Chr05	irgsp1_rep	CDS	6670781	6670916	.	-	0	Parent=Os05t0207700-01
Chr05	irgsp1_rep	CDS	6668363	6668621	.	-	2	Parent=Os05t0207700-01
Chr05	irgsp1_rep	CDS	6668074	6668206	.	-	1	Parent=Os05t0207700-01
Chr05	irgsp1_rep	CDS	6667424	6667651	.	-	0	Parent=Os05t0207700-01
Chr05	irgsp1_rep	three_prime_UTR	6666869	6667423	.	-	.	Parent=Os05t0207700-01
Chr05	irgsp1_rep	mRNA	6666500	6671865	.	-	.	ID=Os05t0207700-02;Name=Os05t0207700-02;Locus_id=Os05g0207700;Note=Similar to Serine/threonine-protein kinase PBS1 (EC 2.7.1.37) (AvrPphB susceptible protein 1).;Transcript_evidence=AK103861 (DDBJ%2C Best hit);ORF_evidence=B4FFH0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033149B15;Expression=AK103861;TENOR=Os05t0207700-02;KEGG=Os05t0207700-02 (EC:2.7.1.37)
Chr05	irgsp1_rep	five_prime_UTR	6671858	6671865	.	-	.	Parent=Os05t0207700-02
Chr05	irgsp1_rep	CDS	6671339	6671857	.	-	0	Parent=Os05t0207700-02
Chr05	irgsp1_rep	CDS	6670781	6670916	.	-	0	Parent=Os05t0207700-02
Chr05	irgsp1_rep	CDS	6668363	6668621	.	-	2	Parent=Os05t0207700-02
Chr05	irgsp1_rep	CDS	6668074	6668206	.	-	1	Parent=Os05t0207700-02
Chr05	irgsp1_rep	CDS	6667424	6667651	.	-	0	Parent=Os05t0207700-02
Chr05	irgsp1_rep	three_prime_UTR	6667386	6667423	.	-	.	Parent=Os05t0207700-02
Chr05	irgsp1_rep	three_prime_UTR	6666500	6666745	.	-	.	Parent=Os05t0207700-02
Chr05	irgsp1_rep	mRNA	6678208	6692656	.	+	.	ID=Os05t0207900-01;Name=Os05t0207900-01;Locus_id=Os05g0207900;CGSNL Gene Symbol=SPF1;CGSNL Gene Name=SUMO PROTEASE RELATED TO FERTILITY 1;Oryzabase Gene Symbol Synonym(s)=OsSPF1%2C OsSPF1.1%2C OsSPF1.2;Oryzabase Gene Name Synonym(s)=SUMO protease protein%2C SUMO PROTEASE RELATED TO FERTILITY1;Note=Peptidase C48%2C SUMO/Sentrin/Ubl1 domain containing protein.;Transcript_evidence=AK068965 (DDBJ%2C Best hit);ORF_evidence=B8AZ55 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase C48%2C SUMO/Sentrin/Ubl1 (IPR003653);NIAS_FLcDNA=J013169E19;Oryzabase=20939;TENOR=Os05t0207900-01;B5toI1=Exon-intron structures and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	6678208	6678213	.	+	.	Parent=Os05t0207900-01
Chr05	irgsp1_rep	CDS	6678214	6678295	.	+	0	Parent=Os05t0207900-01
Chr05	irgsp1_rep	CDS	6678388	6678433	.	+	2	Parent=Os05t0207900-01
Chr05	irgsp1_rep	CDS	6680369	6680654	.	+	1	Parent=Os05t0207900-01
Chr05	irgsp1_rep	CDS	6680734	6680812	.	+	0	Parent=Os05t0207900-01
Chr05	irgsp1_rep	CDS	6680889	6680938	.	+	2	Parent=Os05t0207900-01
Chr05	irgsp1_rep	CDS	6682206	6682403	.	+	0	Parent=Os05t0207900-01
Chr05	irgsp1_rep	CDS	6682480	6682537	.	+	0	Parent=Os05t0207900-01
Chr05	irgsp1_rep	CDS	6683313	6683421	.	+	2	Parent=Os05t0207900-01
Chr05	irgsp1_rep	CDS	6684178	6684246	.	+	1	Parent=Os05t0207900-01
Chr05	irgsp1_rep	CDS	6684609	6684737	.	+	1	Parent=Os05t0207900-01
Chr05	irgsp1_rep	CDS	6684895	6685095	.	+	1	Parent=Os05t0207900-01
Chr05	irgsp1_rep	CDS	6685174	6685227	.	+	1	Parent=Os05t0207900-01
Chr05	irgsp1_rep	CDS	6685309	6685404	.	+	1	Parent=Os05t0207900-01
Chr05	irgsp1_rep	CDS	6687752	6687842	.	+	1	Parent=Os05t0207900-01
Chr05	irgsp1_rep	CDS	6689662	6689781	.	+	0	Parent=Os05t0207900-01
Chr05	irgsp1_rep	CDS	6690774	6691121	.	+	0	Parent=Os05t0207900-01
Chr05	irgsp1_rep	CDS	6691239	6692333	.	+	0	Parent=Os05t0207900-01
Chr05	irgsp1_rep	three_prime_UTR	6692334	6692656	.	+	.	Parent=Os05t0207900-01
Chr05	irgsp1_rep	mRNA	6680813	6692546	.	+	.	ID=Os05t0207900-02;Name=Os05t0207900-02;Locus_id=Os05g0207900;CGSNL Gene Symbol=SPF1;CGSNL Gene Name=SUMO PROTEASE RELATED TO FERTILITY 1;Oryzabase Gene Symbol Synonym(s)=OsSPF1%2C OsSPF1.1%2C OsSPF1.2;Oryzabase Gene Name Synonym(s)=SUMO protease protein%2C SUMO PROTEASE RELATED TO FERTILITY1;Note=Hypothetical conserved gene.;Transcript_evidence=AK068570 (DDBJ%2C Best hit);ORF_evidence=B8AZ55 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase C48%2C SUMO/Sentrin/Ubl1 (IPR003653);NIAS_FLcDNA=J013151G13;Oryzabase=20939;Expression=AK068570;TENOR=Os05t0207900-02;KEGG=Os05t0207900-02
Chr05	irgsp1_rep	CDS	6680813	6680938	.	+	0	Parent=Os05t0207900-02
Chr05	irgsp1_rep	CDS	6682206	6682403	.	+	0	Parent=Os05t0207900-02
Chr05	irgsp1_rep	CDS	6682480	6682537	.	+	0	Parent=Os05t0207900-02
Chr05	irgsp1_rep	CDS	6683313	6683421	.	+	2	Parent=Os05t0207900-02
Chr05	irgsp1_rep	CDS	6684178	6684246	.	+	1	Parent=Os05t0207900-02
Chr05	irgsp1_rep	CDS	6684609	6684737	.	+	1	Parent=Os05t0207900-02
Chr05	irgsp1_rep	CDS	6684895	6685095	.	+	1	Parent=Os05t0207900-02
Chr05	irgsp1_rep	CDS	6685174	6685227	.	+	1	Parent=Os05t0207900-02
Chr05	irgsp1_rep	CDS	6685309	6685404	.	+	1	Parent=Os05t0207900-02
Chr05	irgsp1_rep	CDS	6687752	6687842	.	+	1	Parent=Os05t0207900-02
Chr05	irgsp1_rep	CDS	6689662	6689781	.	+	0	Parent=Os05t0207900-02
Chr05	irgsp1_rep	CDS	6690774	6691121	.	+	0	Parent=Os05t0207900-02
Chr05	irgsp1_rep	CDS	6691239	6692333	.	+	0	Parent=Os05t0207900-02
Chr05	irgsp1_rep	three_prime_UTR	6692334	6692546	.	+	.	Parent=Os05t0207900-02
Chr05	irgsp1_rep	mRNA	6696412	6700463	.	+	.	ID=Os05t0208000-01;Name=Os05t0208000-01;Locus_id=Os05g0208000;Note=Similar to 2-oxoglutarate/malate translocator.;Transcript_evidence=AK071500 (DDBJ%2C Best hit);ORF_evidence=Q66PW8 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial inner membrane (GO:0005743),Molecular Function: binding (GO:0005488);InterPro=Mitochondrial carrier protein (IPR002067),Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J023093C11;Expression=AK071500;TENOR=Os05t0208000-01;KEGG=Os05t0208000-01
Chr05	irgsp1_rep	five_prime_UTR	6696412	6696618	.	+	.	Parent=Os05t0208000-01
Chr05	irgsp1_rep	CDS	6696619	6696759	.	+	0	Parent=Os05t0208000-01
Chr05	irgsp1_rep	CDS	6697576	6697659	.	+	0	Parent=Os05t0208000-01
Chr05	irgsp1_rep	CDS	6697960	6698021	.	+	0	Parent=Os05t0208000-01
Chr05	irgsp1_rep	CDS	6699200	6699561	.	+	1	Parent=Os05t0208000-01
Chr05	irgsp1_rep	CDS	6699803	6700017	.	+	2	Parent=Os05t0208000-01
Chr05	irgsp1_rep	CDS	6700109	6700165	.	+	0	Parent=Os05t0208000-01
Chr05	irgsp1_rep	three_prime_UTR	6700166	6700463	.	+	.	Parent=Os05t0208000-01
Chr05	irgsp1_rep	mRNA	6696480	6698022	.	+	.	ID=Os05t0208000-02;Name=Os05t0208000-02;Locus_id=Os05g0208000;Note=Similar to Mitochondrial 2-oxoglutarate/malate carrier protein.;Transcript_evidence=AK063666 (DDBJ%2C Best hit);ORF_evidence=NP_001182793.1 (RefSeq);InterPro=Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=001-119-C11;Expression=AK063666;TENOR=Os05t0208000-02;KEGG=Os05t0208000-02
Chr05	irgsp1_rep	five_prime_UTR	6696480	6696618	.	+	.	Parent=Os05t0208000-02
Chr05	irgsp1_rep	CDS	6696619	6696759	.	+	0	Parent=Os05t0208000-02
Chr05	irgsp1_rep	CDS	6697576	6697659	.	+	0	Parent=Os05t0208000-02
Chr05	irgsp1_rep	CDS	6697960	6698022	.	+	0	Parent=Os05t0208000-02
Chr05	irgsp1_rep	mRNA	6696486	6700470	.	+	.	ID=Os05t0208000-03;Name=Os05t0208000-03;Locus_id=Os05g0208000;Note=Similar to 2-oxoglutarate/malate translocator.;Transcript_evidence=AK059612 (DDBJ%2C Best hit);ORF_evidence=Q66PW8 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial inner membrane (GO:0005743),Molecular Function: binding (GO:0005488);InterPro=Mitochondrial carrier protein (IPR002067),Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=001-030-F09;Expression=AK059612;TENOR=Os05t0208000-03;KEGG=Os05t0208000-03
Chr05	irgsp1_rep	five_prime_UTR	6696486	6696618	.	+	.	Parent=Os05t0208000-03
Chr05	irgsp1_rep	CDS	6696619	6696759	.	+	0	Parent=Os05t0208000-03
Chr05	irgsp1_rep	CDS	6697576	6697659	.	+	0	Parent=Os05t0208000-03
Chr05	irgsp1_rep	CDS	6697960	6698021	.	+	0	Parent=Os05t0208000-03
Chr05	irgsp1_rep	CDS	6699200	6699561	.	+	1	Parent=Os05t0208000-03
Chr05	irgsp1_rep	CDS	6699803	6700017	.	+	2	Parent=Os05t0208000-03
Chr05	irgsp1_rep	CDS	6700109	6700165	.	+	0	Parent=Os05t0208000-03
Chr05	irgsp1_rep	three_prime_UTR	6700166	6700470	.	+	.	Parent=Os05t0208000-03
Chr05	irgsp1_rep	mRNA	6699259	6700461	.	+	.	ID=Os05t0208000-04;Name=Os05t0208000-04;Locus_id=Os05g0208000;Note=Similar to Mitochondrial 2-oxoglutarate/malate carrier protein.;Transcript_evidence=AK103990 (DDBJ%2C Best hit);ORF_evidence=NP_001182793.1 (RefSeq);InterPro=Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=001-018-B11;Expression=AK103990;TENOR=Os05t0208000-04;KEGG=Os05t0208000-04
Chr05	irgsp1_rep	five_prime_UTR	6699259	6699260	.	+	.	Parent=Os05t0208000-04
Chr05	irgsp1_rep	CDS	6699261	6699561	.	+	0	Parent=Os05t0208000-04
Chr05	irgsp1_rep	CDS	6699803	6700017	.	+	2	Parent=Os05t0208000-04
Chr05	irgsp1_rep	CDS	6700109	6700165	.	+	0	Parent=Os05t0208000-04
Chr05	irgsp1_rep	three_prime_UTR	6700166	6700461	.	+	.	Parent=Os05t0208000-04
Chr05	irgsp1_rep	mRNA	6699339	6700469	.	-	.	ID=Os05t0208050-00;Name=Os05t0208050-00;Locus_id=Os05g0208050;Note=Hypothetical gene.;Transcript_evidence=BT016874 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0208050-00
Chr05	irgsp1_rep	five_prime_UTR	6700202	6700469	.	-	.	Parent=Os05t0208050-00
Chr05	irgsp1_rep	CDS	6700108	6700201	.	-	0	Parent=Os05t0208050-00
Chr05	irgsp1_rep	CDS	6699601	6700016	.	-	2	Parent=Os05t0208050-00
Chr05	irgsp1_rep	three_prime_UTR	6699339	6699600	.	-	.	Parent=Os05t0208050-00
Chr05	irgsp1_rep	mRNA	6701053	6702933	.	-	.	ID=Os05t0208100-01;Name=Os05t0208100-01;Locus_id=Os05g0208100;CGSNL Gene Symbol=CIPK20;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 20;Oryzabase Gene Symbol Synonym(s)=OsCIPK20;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 20;Note=Similar to CBL-interacting serine/threonine-protein kinase 15 (EC 2.7.1.37) (Serine/threonine-protein kinase ATPK10) (SOS2-like protein kinase PKS3) (SOS-interacting protein 2) (SNF1-related kinase 3.1).;Transcript_evidence=AK107068 (DDBJ%2C Best hit);ORF_evidence=Q60EY8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),NAF domain (IPR004041),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),NAF/FISL domain (IPR018451),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=002-121-E08;Oryzabase=7407;Expression=AK107068;TENOR=Os05t0208100-01;KEGG=Os05t0208100-01 (EC:2.7.1.37%2C EC:2.7.11.1)
Chr05	irgsp1_rep	five_prime_UTR	6702810	6702933	.	-	.	Parent=Os05t0208100-01
Chr05	irgsp1_rep	CDS	6701409	6702809	.	-	0	Parent=Os05t0208100-01
Chr05	irgsp1_rep	three_prime_UTR	6701053	6701408	.	-	.	Parent=Os05t0208100-01
Chr05	irgsp1_rep	mRNA	6722266	6723481	.	-	.	ID=Os05t0208500-01;Name=Os05t0208500-01;Locus_id=Os05g0208500;CGSNL Gene Symbol=GA2OX10;CGSNL Gene Name=GIBBERELLIN 2-OXIDASE 10;Oryzabase Gene Symbol Synonym(s)=OsGA2ox10;Note=Hypothetical protein.;Transcript_evidence=AK108343 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-142-B03;Oryzabase=9087;TENOR=Os05t0208500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	6723291	6723481	.	-	0	Parent=Os05t0208500-01
Chr05	irgsp1_rep	CDS	6722545	6722908	.	-	1	Parent=Os05t0208500-01
Chr05	irgsp1_rep	three_prime_UTR	6722266	6722544	.	-	.	Parent=Os05t0208500-01
Chr05	irgsp1_rep	mRNA	6721756	6723481	.	-	.	ID=Os05t0208500-03;Name=Os05t0208500-03;Locus_id=Os05g0208500;CGSNL Gene Symbol=GA2OX10;CGSNL Gene Name=GIBBERELLIN 2-OXIDASE 10;Oryzabase Gene Symbol Synonym(s)=OsGA2ox10;Note=Hypothetical conserved gene.;Transcript_evidence=AK119570 (DDBJ%2C Best hit),AK100789 (DDBJ%2C Best hit);ORF_evidence=Q75IL1 (UniProt);NIAS_FLcDNA=002-117-A09,J023121A18;Oryzabase=9087;Expression=AK119570;TENOR=Os05t0208500-03;KEGG=Os05t0208500-03
Chr05	irgsp1_rep	five_prime_UTR	6723480	6723481	.	-	.	Parent=Os05t0208500-03
Chr05	irgsp1_rep	CDS	6722943	6723479	.	-	0	Parent=Os05t0208500-03
Chr05	irgsp1_rep	three_prime_UTR	6721756	6722942	.	-	.	Parent=Os05t0208500-03
Chr05	irgsp1_rep	mRNA	6721224	6727270	.	-	.	ID=Os05t0208550-00;Name=Os05t0208550-00;Locus_id=Os05g0208550;CGSNL Gene Symbol=GA2OX10;CGSNL Gene Name=GIBBERELLIN 2-OXIDASE 10;Oryzabase Gene Symbol Synonym(s)=OsGA2ox10;Note=Similar to gibberellin 2-beta-dioxygenase.;Transcript_evidence=AY551432 (DDBJ);ORF_evidence=NP_001146872.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Isopenicillin N synthase (IPR002283),Oxoglutarate/iron-dependent oxygenase (IPR005123);Oryzabase=9087;TENOR=Os05t0208550-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	6727247	6727270	.	-	.	Parent=Os05t0208550-00
Chr05	irgsp1_rep	CDS	6726768	6727246	.	-	0	Parent=Os05t0208550-00
Chr05	irgsp1_rep	CDS	6724209	6724557	.	-	1	Parent=Os05t0208550-00
Chr05	irgsp1_rep	CDS	6721224	6721475	.	-	0	Parent=Os05t0208550-00
Chr05	irgsp1_rep	mRNA	6729957	6733304	.	+	.	ID=Os05t0208600-00;Name=Os05t0208600-00;Locus_id=Os05g0208600;Note=Myb/SANT-like domain domain containing protein.;Transcript_evidence=AK110816 (DDBJ%2C Secondary hit);ORF_evidence=B9FN25 (UniProt);InterPro=Myb/SANT-like domain (IPR024752);Expression=AK110816;TENOR=Os05t0208600-00;KEGG=Os05t0208600-00
Chr05	irgsp1_rep	five_prime_UTR	6729957	6730221	.	+	.	Parent=Os05t0208600-00
Chr05	irgsp1_rep	five_prime_UTR	6731994	6731994	.	+	.	Parent=Os05t0208600-00
Chr05	irgsp1_rep	CDS	6731995	6732342	.	+	0	Parent=Os05t0208600-00
Chr05	irgsp1_rep	CDS	6732438	6733055	.	+	0	Parent=Os05t0208600-00
Chr05	irgsp1_rep	three_prime_UTR	6733056	6733304	.	+	.	Parent=Os05t0208600-00
Chr05	irgsp1_rep	mRNA	6750835	6751956	.	+	.	ID=Os05t0209000-01;Name=Os05t0209000-01;Locus_id=Os05g0209000;Note=Similar to Cytidine deaminase.;Transcript_evidence=AK111487 (DDBJ%2C Best hit);ORF_evidence=A2WUD7 (UniProt);NIAS_FLcDNA=002-188-G07;TENOR=Os05t0209000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	6750835	6751285	.	+	.	Parent=Os05t0209000-01
Chr05	irgsp1_rep	CDS	6751286	6751837	.	+	0	Parent=Os05t0209000-01
Chr05	irgsp1_rep	three_prime_UTR	6751838	6751956	.	+	.	Parent=Os05t0209000-01
Chr05	irgsp1_rep	mRNA	6752222	6756320	.	-	.	ID=Os05t0209100-01;Name=Os05t0209100-01;Locus_id=Os05g0209100;Note=Glycoside hydrolase%2C family 47 protein.;Transcript_evidence=AK069043 (DDBJ%2C Best hit);ORF_evidence=B6T729 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: mannosyl-oligosaccharide 1%2C2-alpha-mannosidase activity (GO:0004571),Molecular Function: calcium ion binding (GO:0005509);InterPro=Glycoside hydrolase%2C family 47 (IPR001382);NIAS_FLcDNA=J023008E16;Expression=AK069043;TENOR=Os05t0209100-01;KEGG=Os05t0209100-01 (EC:3.2.1.113)
Chr05	irgsp1_rep	five_prime_UTR	6756206	6756320	.	-	.	Parent=Os05t0209100-01
Chr05	irgsp1_rep	CDS	6756098	6756205	.	-	0	Parent=Os05t0209100-01
Chr05	irgsp1_rep	CDS	6754303	6755252	.	-	0	Parent=Os05t0209100-01
Chr05	irgsp1_rep	CDS	6753914	6754175	.	-	1	Parent=Os05t0209100-01
Chr05	irgsp1_rep	CDS	6753579	6753776	.	-	0	Parent=Os05t0209100-01
Chr05	irgsp1_rep	CDS	6753301	6753449	.	-	0	Parent=Os05t0209100-01
Chr05	irgsp1_rep	CDS	6752869	6753139	.	-	1	Parent=Os05t0209100-01
Chr05	irgsp1_rep	three_prime_UTR	6752222	6752868	.	-	.	Parent=Os05t0209100-01
Chr05	irgsp1_rep	mRNA	6758332	6759025	.	+	.	ID=Os05t0209200-01;Name=Os05t0209200-01;Locus_id=Os05g0209200;Note=Hypothetical gene.;Transcript_evidence=AK109245 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-156-G06;Expression=AK109245;TENOR=Os05t0209200-01;KEGG=Os05t0209200-01
Chr05	irgsp1_rep	CDS	6758332	6758577	.	+	0	Parent=Os05t0209200-01
Chr05	irgsp1_rep	three_prime_UTR	6758578	6759025	.	+	.	Parent=Os05t0209200-01
Chr05	irgsp1_rep	mRNA	6760788	6761295	.	+	.	ID=Os05t0209301-00;Name=Os05t0209301-00;Locus_id=Os05g0209301;Note=Hypothetical protein.;Transcript_evidence=EU943053 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0209301-00
Chr05	irgsp1_rep	five_prime_UTR	6760788	6760947	.	+	.	Parent=Os05t0209301-00
Chr05	irgsp1_rep	CDS	6760948	6761295	.	+	0	Parent=Os05t0209301-00
Chr05	irgsp1_rep	mRNA	6766494	6768972	.	+	.	ID=Os05t0209400-01;Name=Os05t0209400-01;Locus_id=Os05g0209400;Note=Similar to Nudix hydrolase 15%2C mitochondrial precursor (EC 3.6.1.-) (AtNUDT15).;Transcript_evidence=AK064744 (DDBJ%2C Best hit);ORF_evidence=B8AZ64 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=NUDIX hydrolase domain (IPR000086),NUDIX hydrolase domain-like (IPR015797);NIAS_FLcDNA=002-120-E02;Expression=AK064744;TENOR=Os05t0209400-01;KEGG=Os05t0209400-01
Chr05	irgsp1_rep	five_prime_UTR	6766494	6766580	.	+	.	Parent=Os05t0209400-01
Chr05	irgsp1_rep	CDS	6766581	6766869	.	+	0	Parent=Os05t0209400-01
Chr05	irgsp1_rep	CDS	6766966	6767108	.	+	2	Parent=Os05t0209400-01
Chr05	irgsp1_rep	CDS	6768350	6768469	.	+	0	Parent=Os05t0209400-01
Chr05	irgsp1_rep	CDS	6768581	6768805	.	+	0	Parent=Os05t0209400-01
Chr05	irgsp1_rep	three_prime_UTR	6768806	6768972	.	+	.	Parent=Os05t0209400-01
Chr05	irgsp1_rep	mRNA	6773865	6774671	.	+	.	ID=Os05t0209500-01;Name=Os05t0209500-01;Locus_id=Os05g0209500;Note=Conserved hypothetical protein.;Transcript_evidence=AK105188 (DDBJ%2C Best hit);ORF_evidence=A2Y1J0 (UniProt);NIAS_FLcDNA=001-106-H08;Expression=AK105188;TENOR=Os05t0209500-01;KEGG=Os05t0209500-01
Chr05	irgsp1_rep	five_prime_UTR	6773865	6774100	.	+	.	Parent=Os05t0209500-01
Chr05	irgsp1_rep	CDS	6774101	6774240	.	+	0	Parent=Os05t0209500-01
Chr05	irgsp1_rep	CDS	6774363	6774486	.	+	1	Parent=Os05t0209500-01
Chr05	irgsp1_rep	three_prime_UTR	6774487	6774671	.	+	.	Parent=Os05t0209500-01
Chr05	irgsp1_rep	mRNA	6787676	6791412	.	+	.	ID=Os05t0209600-01;Name=Os05t0209600-01;Locus_id=Os05g0209600;CGSNL Gene Symbol=GELP63;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 63;Oryzabase Gene Symbol Synonym(s)=OsGELP63;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 63;Note=Similar to Esterase.;Transcript_evidence=AK059511 (DDBJ%2C Best hit),AK100289 (DDBJ%2C Best hit);ORF_evidence=B6TY14 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087),Esterase%2C SGNH hydrolase-type%2C subgroup (IPR013831);NIAS_FLcDNA=001-029-B05,J023075I03;Oryzabase=11013;TENOR=Os05t0209600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	6787676	6787752	.	+	.	Parent=Os05t0209600-01
Chr05	irgsp1_rep	CDS	6787753	6787990	.	+	0	Parent=Os05t0209600-01
Chr05	irgsp1_rep	CDS	6788070	6788276	.	+	2	Parent=Os05t0209600-01
Chr05	irgsp1_rep	CDS	6788461	6788609	.	+	2	Parent=Os05t0209600-01
Chr05	irgsp1_rep	CDS	6789021	6789294	.	+	0	Parent=Os05t0209600-01
Chr05	irgsp1_rep	CDS	6790936	6791153	.	+	2	Parent=Os05t0209600-01
Chr05	irgsp1_rep	three_prime_UTR	6791154	6791412	.	+	.	Parent=Os05t0209600-01
Chr05	irgsp1_rep	mRNA	6787755	6791150	.	-	.	ID=Os05t0209683-00;Name=Os05t0209683-00;Locus_id=Os05g0209683;Note=Hypothetical protein.;Transcript_evidence=tplb0048c08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0209683-00
Chr05	irgsp1_rep	five_prime_UTR	6790915	6791150	.	-	.	Parent=Os05t0209683-00
Chr05	irgsp1_rep	five_prime_UTR	6789074	6789277	.	-	.	Parent=Os05t0209683-00
Chr05	irgsp1_rep	CDS	6789011	6789073	.	-	0	Parent=Os05t0209683-00
Chr05	irgsp1_rep	CDS	6788449	6788603	.	-	0	Parent=Os05t0209683-00
Chr05	irgsp1_rep	CDS	6788193	6788265	.	-	1	Parent=Os05t0209683-00
Chr05	irgsp1_rep	three_prime_UTR	6788076	6788192	.	-	.	Parent=Os05t0209683-00
Chr05	irgsp1_rep	three_prime_UTR	6787755	6787996	.	-	.	Parent=Os05t0209683-00
Chr05	irgsp1_rep	mRNA	6815542	6818535	.	-	.	ID=Os05t0209950-01;Name=Os05t0209950-01;Locus_id=Os05g0209950;Note=Hypothetical gene.;Transcript_evidence=AK242824 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090066C03;TENOR=Os05t0209950-01;KEGG=Os05t0209950-01
Chr05	irgsp1_rep	five_prime_UTR	6817755	6818535	.	-	.	Parent=Os05t0209950-01
Chr05	irgsp1_rep	CDS	6817536	6817754	.	-	0	Parent=Os05t0209950-01
Chr05	irgsp1_rep	three_prime_UTR	6815542	6817535	.	-	.	Parent=Os05t0209950-01
Chr05	irgsp1_rep	mRNA	6824564	6827293	.	+	.	ID=Os05t0210100-01;Name=Os05t0210100-01;Locus_id=Os05g0210100;RAP-DB Gene Symbol Synonym(s)=MHZ11;RAP-DB Gene Name Synonym(s)=mao huzi 11;CGSNL Gene Symbol=GELP64;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 64;Oryzabase Gene Symbol Synonym(s)=OsGELP64%2C OsGELP64a%2C OsGELP64b;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 64;Note=GDSL-type lipase%2C Regulation of ethylene signaling in rice root;Transcript_evidence=AK122049;ORF_evidence=Q75IK2;GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=SGNH hydrolase superfamily (IPR036514),GDSL lipase/esterase (IPR001087),GDSL lipase/esterase-like%2C plant (IPR035669);NIAS_FLcDNA=J033114D08;Manual Curation=March 23%2C 2020;Literature_PMID=32184349;Oryzabase=11014;Expression=AK122049;TENOR=Os05t0210100-01;KEGG=Os05t0210100-01;Subcellular location=endoplasmic reticulum membrane (GO:0005789)
Chr05	irgsp1_rep	five_prime_UTR	6824564	6824651	.	+	.	Parent=Os05t0210100-01
Chr05	irgsp1_rep	CDS	6824652	6824883	.	+	0	Parent=Os05t0210100-01
Chr05	irgsp1_rep	CDS	6824973	6825188	.	+	2	Parent=Os05t0210100-01
Chr05	irgsp1_rep	CDS	6825274	6825699	.	+	2	Parent=Os05t0210100-01
Chr05	irgsp1_rep	CDS	6826705	6826943	.	+	2	Parent=Os05t0210100-01
Chr05	irgsp1_rep	three_prime_UTR	6826944	6827293	.	+	.	Parent=Os05t0210100-01
Chr05	irgsp1_rep	mRNA	6824606	6825706	.	-	.	ID=Os05t0210201-00;Name=Os05t0210201-00;Locus_id=Os05g0210201;Note=Hypothetical gene.;Transcript_evidence=EU950608 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0210201-00;KEGG=Os05t0210201-00
Chr05	irgsp1_rep	five_prime_UTR	6825258	6825706	.	-	.	Parent=Os05t0210201-00
Chr05	irgsp1_rep	five_prime_UTR	6825172	6825177	.	-	.	Parent=Os05t0210201-00
Chr05	irgsp1_rep	CDS	6824971	6825171	.	-	0	Parent=Os05t0210201-00
Chr05	irgsp1_rep	CDS	6824738	6824881	.	-	0	Parent=Os05t0210201-00
Chr05	irgsp1_rep	three_prime_UTR	6824606	6824737	.	-	.	Parent=Os05t0210201-00
Chr05	irgsp1_rep	mRNA	6838742	6842591	.	+	.	ID=Os05t0210400-00;Name=Os05t0210400-00;Locus_id=Os05g0210400;CGSNL Gene Symbol=GELP65;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 65;Oryzabase Gene Symbol Synonym(s)=OsGELP65;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 65;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=BT087601 (DDBJ);ORF_evidence=NP_001054914.2 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);Oryzabase=11015;TENOR=Os05t0210400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	6838742	6839051	.	+	0	Parent=Os05t0210400-00
Chr05	irgsp1_rep	CDS	6839150	6839917	.	+	2	Parent=Os05t0210400-00
Chr05	irgsp1_rep	CDS	6842365	6842591	.	+	2	Parent=Os05t0210400-00
Chr05	irgsp1_rep	mRNA	6838800	6839941	.	-	.	ID=Os05t0210450-00;Name=Os05t0210450-00;Locus_id=Os05g0210450;Note=Hypothetical protein.;Transcript_evidence=EU950608 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0210450-00
Chr05	irgsp1_rep	five_prime_UTR	6839941	6839941	.	-	.	Parent=Os05t0210450-00
Chr05	irgsp1_rep	CDS	6839632	6839940	.	-	0	Parent=Os05t0210450-00
Chr05	irgsp1_rep	three_prime_UTR	6839607	6839631	.	-	.	Parent=Os05t0210450-00
Chr05	irgsp1_rep	three_prime_UTR	6839171	6839501	.	-	.	Parent=Os05t0210450-00
Chr05	irgsp1_rep	three_prime_UTR	6838800	6839060	.	-	.	Parent=Os05t0210450-00
Chr05	irgsp1_rep	mRNA	6843465	6852938	.	-	.	ID=Os05t0210500-00;Name=Os05t0210500-00;Locus_id=Os05g0210500;Note=Timeless protein domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8AZ66 (UniProt);InterPro=Timeless protein (IPR006906),Timeless C-terminal (IPR007725);TENOR=Os05t0210500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	6852836	6852938	.	-	0	Parent=Os05t0210500-00
Chr05	irgsp1_rep	CDS	6852567	6852719	.	-	2	Parent=Os05t0210500-00
Chr05	irgsp1_rep	CDS	6851304	6851463	.	-	2	Parent=Os05t0210500-00
Chr05	irgsp1_rep	CDS	6850642	6850960	.	-	1	Parent=Os05t0210500-00
Chr05	irgsp1_rep	CDS	6850388	6850528	.	-	0	Parent=Os05t0210500-00
Chr05	irgsp1_rep	CDS	6850104	6850296	.	-	0	Parent=Os05t0210500-00
Chr05	irgsp1_rep	CDS	6849881	6850011	.	-	2	Parent=Os05t0210500-00
Chr05	irgsp1_rep	CDS	6848782	6849000	.	-	0	Parent=Os05t0210500-00
Chr05	irgsp1_rep	CDS	6848354	6848520	.	-	0	Parent=Os05t0210500-00
Chr05	irgsp1_rep	CDS	6848029	6848107	.	-	1	Parent=Os05t0210500-00
Chr05	irgsp1_rep	CDS	6847302	6847856	.	-	0	Parent=Os05t0210500-00
Chr05	irgsp1_rep	CDS	6846880	6847226	.	-	0	Parent=Os05t0210500-00
Chr05	irgsp1_rep	CDS	6846678	6846794	.	-	1	Parent=Os05t0210500-00
Chr05	irgsp1_rep	CDS	6846064	6846291	.	-	1	Parent=Os05t0210500-00
Chr05	irgsp1_rep	CDS	6845487	6845588	.	-	1	Parent=Os05t0210500-00
Chr05	irgsp1_rep	CDS	6844892	6845002	.	-	1	Parent=Os05t0210500-00
Chr05	irgsp1_rep	CDS	6844595	6844765	.	-	1	Parent=Os05t0210500-00
Chr05	irgsp1_rep	CDS	6844342	6844449	.	-	1	Parent=Os05t0210500-00
Chr05	irgsp1_rep	CDS	6843465	6843696	.	-	1	Parent=Os05t0210500-00
Chr05	irgsp1_rep	mRNA	6853983	6858788	.	-	.	ID=Os05t0210525-00;Name=Os05t0210525-00;Locus_id=Os05g0210525;Note=Hypothetical conserved gene.;Transcript_evidence=AK372739 (DDBJ);ORF_evidence=NP_001047903.1 (RefSeq);TENOR=Os05t0210525-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	6858668	6858788	.	-	.	Parent=Os05t0210525-00
Chr05	irgsp1_rep	five_prime_UTR	6854352	6854401	.	-	.	Parent=Os05t0210525-00
Chr05	irgsp1_rep	CDS	6853983	6854351	.	-	0	Parent=Os05t0210525-00
Chr05	irgsp1_rep	mRNA	6859187	6862484	.	+	.	ID=Os05t0210600-01;Name=Os05t0210600-01;Locus_id=Os05g0210600;Note=Molecular chaperone%2C heat shock protein%2C Hsp40%2C DnaJ domain containing protein.;Transcript_evidence=AK104996 (DDBJ%2C Best hit);ORF_evidence=B8AZ67 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide TPR-1 (IPR001440),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=001-003-D08;Expression=AK104996;TENOR=Os05t0210600-01;KEGG=Os05t0210600-01
Chr05	irgsp1_rep	CDS	6859187	6859362	.	+	0	Parent=Os05t0210600-01
Chr05	irgsp1_rep	CDS	6860028	6860223	.	+	1	Parent=Os05t0210600-01
Chr05	irgsp1_rep	CDS	6860306	6860490	.	+	0	Parent=Os05t0210600-01
Chr05	irgsp1_rep	CDS	6860671	6861004	.	+	1	Parent=Os05t0210600-01
Chr05	irgsp1_rep	CDS	6861099	6861303	.	+	0	Parent=Os05t0210600-01
Chr05	irgsp1_rep	CDS	6861659	6861768	.	+	2	Parent=Os05t0210600-01
Chr05	irgsp1_rep	three_prime_UTR	6861769	6861922	.	+	.	Parent=Os05t0210600-01
Chr05	irgsp1_rep	three_prime_UTR	6862006	6862484	.	+	.	Parent=Os05t0210600-01
Chr05	irgsp1_rep	mRNA	6863678	6864515	.	-	.	ID=Os05t0210700-01;Name=Os05t0210700-01;Locus_id=Os05g0210700;Note=Conserved hypothetical protein.;Transcript_evidence=AK241841 (DDBJ%2C Best hit);ORF_evidence=NP_001174277.1 (RefSeq);NIAS_FLcDNA=J065213M19;TENOR=Os05t0210700-01;KEGG=Os05t0210700-01
Chr05	irgsp1_rep	five_prime_UTR	6864508	6864515	.	-	.	Parent=Os05t0210700-01
Chr05	irgsp1_rep	CDS	6864046	6864507	.	-	0	Parent=Os05t0210700-01
Chr05	irgsp1_rep	three_prime_UTR	6863678	6864045	.	-	.	Parent=Os05t0210700-01
Chr05	irgsp1_rep	mRNA	6882735	6884848	.	-	.	ID=Os05t0211100-01;Name=Os05t0211100-01;Locus_id=Os05g0211100;CGSNL Gene Symbol=CYP51G3;CGSNL Gene Name=P-450 51G3;Oryzabase Gene Symbol Synonym(s)=OsCYP51G3;Oryzabase Gene Name Synonym(s)=CytoChrome P450 51G3;Note=Similar to CytoChrome P450-like protein.;Transcript_evidence=AK107185 (DDBJ%2C Best hit);ORF_evidence=A1BQV2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: monooxygenase activity (GO:0004497),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group IV (IPR002403),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=002-124-H08;Oryzabase=17988;Expression=AK107185;TENOR=Os05t0211100-01;KEGG=Os05t0211100-01 (EC:1.14.13.70)
Chr05	irgsp1_rep	five_prime_UTR	6884817	6884848	.	-	.	Parent=Os05t0211100-01
Chr05	irgsp1_rep	CDS	6884391	6884816	.	-	0	Parent=Os05t0211100-01
Chr05	irgsp1_rep	CDS	6882879	6883895	.	-	0	Parent=Os05t0211100-01
Chr05	irgsp1_rep	three_prime_UTR	6882735	6882878	.	-	.	Parent=Os05t0211100-01
Chr05	irgsp1_rep	mRNA	6882735	6884876	.	-	.	ID=Os05t0211100-02;Name=Os05t0211100-02;Locus_id=Os05g0211100;RAP-DB Gene Symbol Synonym(s)=CYP51G3%2C OsCYP51G3;RAP-DB Gene Name Synonym(s)=P-450 51G3%2C CytoChrome P450 51G3;CGSNL Gene Symbol=CYP51G3;CGSNL Gene Name=P-450 51G3;Oryzabase Gene Symbol Synonym(s)=OsCYP51G3;Oryzabase Gene Name Synonym(s)=CytoChrome P450 51G3;Note=Obtusifoliol 14a-demethylase%2C Phytosterol and Brassinosteroid biosynthesis;Transcript_evidence=Inferred from literature;ORF_evidence=B9FIU9;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: monooxygenase activity (GO:0004497),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group IV (IPR002403),CytoChrome P450%2C conserved site (IPR017972);Manual Curation=October 19%2C 2015;Literature_PMID=26083975,21501172;Oryzabase=17988
Chr05	irgsp1_rep	CDS	6884391	6884876	.	-	0	Parent=Os05t0211100-02
Chr05	irgsp1_rep	CDS	6882879	6883895	.	-	0	Parent=Os05t0211100-02
Chr05	irgsp1_rep	three_prime_UTR	6882735	6882878	.	-	.	Parent=Os05t0211100-02
Chr05	irgsp1_rep	mRNA	6933857	6936583	.	+	.	ID=Os05t0212100-01;Name=Os05t0212100-01;Locus_id=Os05g0212100;Note=Asp/Glu racemase%2C active site domain containing protein.;Transcript_evidence=AK067394 (DDBJ%2C Best hit);ORF_evidence=A2Y1K2 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013105M16;Expression=AK067394;TENOR=Os05t0212100-01;KEGG=Os05t0212100-01
Chr05	irgsp1_rep	five_prime_UTR	6933857	6933958	.	+	.	Parent=Os05t0212100-01
Chr05	irgsp1_rep	CDS	6933959	6936427	.	+	0	Parent=Os05t0212100-01
Chr05	irgsp1_rep	three_prime_UTR	6936428	6936583	.	+	.	Parent=Os05t0212100-01
Chr05	irgsp1_rep	mRNA	6933974	6936430	.	-	.	ID=Os05t0212150-00;Name=Os05t0212150-00;Locus_id=Os05g0212150;Note=Hypothetical protein.;Transcript_evidence=tplb0021n11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0212150-00
Chr05	irgsp1_rep	five_prime_UTR	6935359	6936430	.	-	.	Parent=Os05t0212150-00
Chr05	irgsp1_rep	five_prime_UTR	6934749	6934777	.	-	.	Parent=Os05t0212150-00
Chr05	irgsp1_rep	CDS	6934506	6934748	.	-	0	Parent=Os05t0212150-00
Chr05	irgsp1_rep	CDS	6934028	6934384	.	-	0	Parent=Os05t0212150-00
Chr05	irgsp1_rep	three_prime_UTR	6933974	6934027	.	-	.	Parent=Os05t0212150-00
Chr05	irgsp1_rep	mRNA	6936886	6939746	.	-	.	ID=Os05t0212200-01;Name=Os05t0212200-01;Locus_id=Os05g0212200;Note=Hypothetical conserved gene.;Transcript_evidence=AK243384 (DDBJ%2C Best hit);ORF_evidence=B8AZ70 (UniProt);InterPro=Leucine-rich repeat%2C cysteine-containing subtype (IPR006553);NIAS_FLcDNA=J100063E16;TENOR=Os05t0212200-01;KEGG=Os05t0212200-01
Chr05	irgsp1_rep	five_prime_UTR	6939698	6939746	.	-	.	Parent=Os05t0212200-01
Chr05	irgsp1_rep	CDS	6939486	6939697	.	-	0	Parent=Os05t0212200-01
Chr05	irgsp1_rep	CDS	6939208	6939362	.	-	1	Parent=Os05t0212200-01
Chr05	irgsp1_rep	CDS	6938895	6939112	.	-	2	Parent=Os05t0212200-01
Chr05	irgsp1_rep	CDS	6938094	6938706	.	-	0	Parent=Os05t0212200-01
Chr05	irgsp1_rep	CDS	6937502	6938011	.	-	2	Parent=Os05t0212200-01
Chr05	irgsp1_rep	CDS	6937294	6937406	.	-	2	Parent=Os05t0212200-01
Chr05	irgsp1_rep	three_prime_UTR	6936886	6937293	.	-	.	Parent=Os05t0212200-01
Chr05	irgsp1_rep	mRNA	6937304	6938426	.	+	.	ID=Os05t0212250-00;Name=Os05t0212250-00;Locus_id=Os05g0212250;Note=Non-protein coding transcript.;Transcript_evidence=BT019082 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0212250-00
Chr05	irgsp1_rep	exon	6937304	6937408	.	+	.	Parent=Os05t0212250-00
Chr05	irgsp1_rep	exon	6937510	6937981	.	+	.	Parent=Os05t0212250-00
Chr05	irgsp1_rep	exon	6938048	6938426	.	+	.	Parent=Os05t0212250-00
Chr05	irgsp1_rep	mRNA	6941895	6944592	.	-	.	ID=Os05t0212300-01;Name=Os05t0212300-01;Locus_id=Os05g0212300;CGSNL Gene Symbol=GH9C4;CGSNL Gene Name=GLYCOSIDE HYDROLASE 9C4;Oryzabase Gene Symbol Synonym(s)=OsGH9C4;Oryzabase Gene Name Synonym(s)=glycoside hydrolase OsGH9C4%2C glycoside hydrolase 9C4;Note=Similar to Endo-beta-1%2C4-glucanase precursor (EC 3.2.1.4).;Transcript_evidence=AK063458 (DDBJ%2C Best hit),AK099370 (DDBJ%2C Best hit);ORF_evidence=Q5NAT0 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Cellular Component: extracellular region (GO:0005576),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Glycoside hydrolase%2C family 9 (IPR001701),Six-hairpin glycosidase-like (IPR008928),Six-hairpin glycosidase (IPR012341),Glycoside hydrolase%2C family 9%2C active site (IPR018221),Carbohydrate binding domain CBM49 (IPR019028);NIAS_FLcDNA=001-115-G09,J033048N02;Oryzabase=11722;TENOR=Os05t0212300-01
Chr05	irgsp1_rep	five_prime_UTR	6944507	6944592	.	-	.	Parent=Os05t0212300-01
Chr05	irgsp1_rep	CDS	6944282	6944506	.	-	0	Parent=Os05t0212300-01
Chr05	irgsp1_rep	CDS	6943727	6944140	.	-	0	Parent=Os05t0212300-01
Chr05	irgsp1_rep	CDS	6943551	6943640	.	-	0	Parent=Os05t0212300-01
Chr05	irgsp1_rep	CDS	6943027	6943479	.	-	0	Parent=Os05t0212300-01
Chr05	irgsp1_rep	CDS	6942125	6942832	.	-	0	Parent=Os05t0212300-01
Chr05	irgsp1_rep	three_prime_UTR	6941895	6942124	.	-	.	Parent=Os05t0212300-01
Chr05	irgsp1_rep	mRNA	6942506	6944415	.	+	.	ID=Os05t0212350-00;Name=Os05t0212350-00;Locus_id=Os05g0212350;Note=Hypothetical protein.;Transcript_evidence=tplb0042g22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0212350-00
Chr05	irgsp1_rep	five_prime_UTR	6942506	6942857	.	+	.	Parent=Os05t0212350-00
Chr05	irgsp1_rep	five_prime_UTR	6943048	6943186	.	+	.	Parent=Os05t0212350-00
Chr05	irgsp1_rep	CDS	6943187	6943426	.	+	0	Parent=Os05t0212350-00
Chr05	irgsp1_rep	three_prime_UTR	6943427	6943494	.	+	.	Parent=Os05t0212350-00
Chr05	irgsp1_rep	three_prime_UTR	6943567	6943640	.	+	.	Parent=Os05t0212350-00
Chr05	irgsp1_rep	three_prime_UTR	6943727	6944137	.	+	.	Parent=Os05t0212350-00
Chr05	irgsp1_rep	three_prime_UTR	6944279	6944415	.	+	.	Parent=Os05t0212350-00
Chr05	irgsp1_rep	mRNA	6957483	6964188	.	-	.	ID=Os05t0212400-01;Name=Os05t0212400-01;Locus_id=Os05g0212400;Note=Similar to Uncharacterized plant-specific domain TIGR01589 family protein.;Transcript_evidence=AK072108 (DDBJ%2C Best hit);ORF_evidence=Q60CZ4 (UniProt);InterPro=Conserved hypothetical protein CHP01589%2C plant (IPR006476);NIAS_FLcDNA=J013118G21;TENOR=Os05t0212400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	6964016	6964188	.	-	.	Parent=Os05t0212400-01
Chr05	irgsp1_rep	five_prime_UTR	6962923	6963876	.	-	.	Parent=Os05t0212400-01
Chr05	irgsp1_rep	CDS	6962890	6962922	.	-	0	Parent=Os05t0212400-01
Chr05	irgsp1_rep	CDS	6962545	6962700	.	-	0	Parent=Os05t0212400-01
Chr05	irgsp1_rep	CDS	6962325	6962430	.	-	0	Parent=Os05t0212400-01
Chr05	irgsp1_rep	CDS	6961649	6961831	.	-	2	Parent=Os05t0212400-01
Chr05	irgsp1_rep	CDS	6959328	6959493	.	-	2	Parent=Os05t0212400-01
Chr05	irgsp1_rep	CDS	6958426	6958709	.	-	1	Parent=Os05t0212400-01
Chr05	irgsp1_rep	CDS	6957868	6957951	.	-	2	Parent=Os05t0212400-01
Chr05	irgsp1_rep	CDS	6957705	6957760	.	-	2	Parent=Os05t0212400-01
Chr05	irgsp1_rep	three_prime_UTR	6957483	6957704	.	-	.	Parent=Os05t0212400-01
Chr05	irgsp1_rep	mRNA	6975932	6976841	.	+	.	ID=Os05t0212550-00;Name=Os05t0212550-00;Locus_id=Os05g0212550;Note=Hypothetical protein.;Transcript_evidence=BT063109 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0212550-00
Chr05	irgsp1_rep	five_prime_UTR	6975932	6976068	.	+	.	Parent=Os05t0212550-00
Chr05	irgsp1_rep	CDS	6976069	6976611	.	+	0	Parent=Os05t0212550-00
Chr05	irgsp1_rep	three_prime_UTR	6976612	6976841	.	+	.	Parent=Os05t0212550-00
Chr05	irgsp1_rep	mRNA	6982119	6983529	.	-	.	ID=Os05t0212600-00;Name=Os05t0212600-00;Locus_id=Os05g0212600;CGSNL Gene Symbol=PKS5;CGSNL Gene Name=POLYKETIDE SYNTHASE 5;Oryzabase Gene Symbol Synonym(s)=OsPKS05%2C PKS05%2C OsPKS5%2C OsCHS5%2C CHS5;Oryzabase Gene Name Synonym(s)=polyketide synthase 5%2C Chalcone synthase 5;Note=Chalcone/stilbene synthase%2C N-terminal domain containing protein.;Transcript_evidence=AK362160 (DDBJ);ORF_evidence=A2Y1K6 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Chalcone/stilbene synthase%2C N-terminal (IPR001099),Chalcone/stilbene synthase%2C C-terminal (IPR012328),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);Oryzabase=21556;TENOR=Os05t0212600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	6983305	6983529	.	-	0	Parent=Os05t0212600-00
Chr05	irgsp1_rep	CDS	6982393	6983076	.	-	0	Parent=Os05t0212600-00
Chr05	irgsp1_rep	three_prime_UTR	6982119	6982392	.	-	.	Parent=Os05t0212600-00
Chr05	irgsp1_rep	mRNA	6982203	6983112	.	+	.	ID=Os05t0212750-00;Name=Os05t0212750-00;Locus_id=Os05g0212750;Note=Hypothetical protein.;Transcript_evidence=BT063109 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0212750-00
Chr05	irgsp1_rep	five_prime_UTR	6982203	6982290	.	+	.	Parent=Os05t0212750-00
Chr05	irgsp1_rep	CDS	6982291	6982578	.	+	0	Parent=Os05t0212750-00
Chr05	irgsp1_rep	three_prime_UTR	6982579	6983112	.	+	.	Parent=Os05t0212750-00
Chr05	irgsp1_rep	mRNA	6991465	6993662	.	-	.	ID=Os05t0212900-00;Name=Os05t0212900-00;Locus_id=Os05g0212900;Oryzabase Gene Symbol Synonym(s)=CHS%2C OsPKS06%2C OsPKS6%2C PKS06%2C PKS6%2C OsCHS6%2C CHS6;Oryzabase Gene Name Synonym(s)=chalcone synthase%2C polyketide synthase 6%2C Chalcone synthase 6;Note=Similar to Chalcone synthase J (EC 2.3.1.74) (Naringenin-chalcone synthase J).;Transcript_evidence=ab initio prediction;ORF_evidence=Q7G630 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Chalcone/stilbene synthase%2C N-terminal (IPR001099),Polyketide synthase%2C type III (IPR011141),Chalcone/stilbene synthase%2C C-terminal (IPR012328),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);Oryzabase=17791;TENOR=Os05t0212900-00;KEGG=Os05t0212900-00 (EC:2.3.1.74)
Chr05	irgsp1_rep	CDS	6993467	6993662	.	-	0	Parent=Os05t0212900-00
Chr05	irgsp1_rep	CDS	6991465	6992447	.	-	2	Parent=Os05t0212900-00
Chr05	irgsp1_rep	mRNA	6991555	6992518	.	+	.	ID=Os05t0213000-00;Name=Os05t0213000-00;Locus_id=Os05g0213000;Note=Hypothetical protein.;Transcript_evidence=EU966441 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0213000-00
Chr05	irgsp1_rep	five_prime_UTR	6991555	6991690	.	+	.	Parent=Os05t0213000-00
Chr05	irgsp1_rep	CDS	6991691	6992113	.	+	0	Parent=Os05t0213000-00
Chr05	irgsp1_rep	three_prime_UTR	6992114	6992518	.	+	.	Parent=Os05t0213000-00
Chr05	irgsp1_rep	mRNA	7003964	7005454	.	-	.	ID=Os05t0213100-00;Name=Os05t0213100-00;Locus_id=Os05g0213100;CGSNL Gene Symbol=PKS7;CGSNL Gene Name=POLYKETIDE SYNTHASE 7;Oryzabase Gene Symbol Synonym(s)=OsPKS07%2C PKS07%2C OsPKS7%2C OsCHS7%2C CHS7;Oryzabase Gene Name Synonym(s)=polyketide synthase 7%2C Chalcone synthase 7;Note=Similar to Chalcone and stilbene synthases%2C N-terminal domain containing protein.;Transcript_evidence=AK358873 (DDBJ);ORF_evidence=Q7G628 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Chalcone/stilbene synthase%2C N-terminal (IPR001099),Polyketide synthase%2C type III (IPR011141),Chalcone/stilbene synthase%2C C-terminal (IPR012328),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);Oryzabase=21557;TENOR=Os05t0213100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	7005154	7005454	.	-	0	Parent=Os05t0213100-00
Chr05	irgsp1_rep	CDS	7004068	7005050	.	-	2	Parent=Os05t0213100-00
Chr05	irgsp1_rep	three_prime_UTR	7003964	7004067	.	-	.	Parent=Os05t0213100-00
Chr05	irgsp1_rep	mRNA	7004150	7005122	.	+	.	ID=Os05t0213150-00;Name=Os05t0213150-00;Locus_id=Os05g0213150;Note=Hypothetical protein.;Transcript_evidence=EU966441 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0213150-00
Chr05	irgsp1_rep	five_prime_UTR	7004150	7004293	.	+	.	Parent=Os05t0213150-00
Chr05	irgsp1_rep	CDS	7004294	7004836	.	+	0	Parent=Os05t0213150-00
Chr05	irgsp1_rep	three_prime_UTR	7004837	7005122	.	+	.	Parent=Os05t0213150-00
Chr05	irgsp1_rep	mRNA	7034322	7036548	.	+	.	ID=Os05t0213500-01;Name=Os05t0213500-01;Locus_id=Os05g0213500;RAP-DB Gene Symbol Synonym(s)=OsPYL/RCAR5%2C PYL5%2C OsPYL5%2C OsPYL11;RAP-DB Gene Name Synonym(s)=PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 5;CGSNL Gene Symbol=PYL/RCAR5;CGSNL Gene Name=PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 5;Oryzabase Gene Symbol Synonym(s)=OsPYL/RCAR5%2C PYL5%2C OsPYL5%2C OsPYL11%2C PYL11;Oryzabase Gene Name Synonym(s)=pyrabactin resistance-like 5%2C PYR1-like 11%2C pyrabactin resistance 1-like 11;Note=Rice orthologue of the abscisic acid (ABA) receptor%2C Positive regulator of the ABA signal transduction pathway%2C Abiotic stress tolerance;Transcript_evidence=AK065280;ORF_evidence=Q6I5C3;InterPro=Polyketide cyclase/dehydrase (IPR019587),START-like domain (IPR023393);NIAS_FLcDNA=J013002L23;Manual Curation=December 15%2C 2015;Literature_PMID=22071266,24474809;Oryzabase=17868;Expression=AK065280;TENOR=Os05t0213500-01;KEGG=Os05t0213500-01
Chr05	irgsp1_rep	five_prime_UTR	7034322	7034470	.	+	.	Parent=Os05t0213500-01
Chr05	irgsp1_rep	CDS	7034471	7034665	.	+	0	Parent=Os05t0213500-01
Chr05	irgsp1_rep	CDS	7035057	7035275	.	+	0	Parent=Os05t0213500-01
Chr05	irgsp1_rep	CDS	7036017	7036232	.	+	0	Parent=Os05t0213500-01
Chr05	irgsp1_rep	three_prime_UTR	7036233	7036548	.	+	.	Parent=Os05t0213500-01
Chr05	irgsp1_rep	mRNA	7049956	7050866	.	-	.	ID=Os05t0213900-01;Name=Os05t0213900-01;Locus_id=Os05g0213900;Note=Virulence factor%2C pectin lyase fold family protein.;Transcript_evidence=AK243245 (DDBJ%2C Best hit);ORF_evidence=NP_001054924.1 (RefSeq);NIAS_FLcDNA=J100047D23;TENOR=Os05t0213900-01;KEGG=Os05t0213900-01
Chr05	irgsp1_rep	five_prime_UTR	7050801	7050866	.	-	.	Parent=Os05t0213900-01
Chr05	irgsp1_rep	CDS	7050219	7050800	.	-	0	Parent=Os05t0213900-01
Chr05	irgsp1_rep	three_prime_UTR	7049956	7050218	.	-	.	Parent=Os05t0213900-01
Chr05	irgsp1_rep	mRNA	7062008	7062899	.	+	.	ID=Os05t0214100-01;Name=Os05t0214100-01;Locus_id=Os05g0214100;Note=Similar to Kluyveromyces lactis strain NRRL Y-1140 Chromosome F of strain NRRL Y- 1140 of Kluyveromyces lactis.;Transcript_evidence=AK107105 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-122-A10;Expression=AK107105;TENOR=Os05t0214100-01;KEGG=Os05t0214100-01
Chr05	irgsp1_rep	five_prime_UTR	7062008	7062378	.	+	.	Parent=Os05t0214100-01
Chr05	irgsp1_rep	CDS	7062379	7062741	.	+	0	Parent=Os05t0214100-01
Chr05	irgsp1_rep	three_prime_UTR	7062742	7062899	.	+	.	Parent=Os05t0214100-01
Chr05	irgsp1_rep	mRNA	7062010	7066128	.	+	.	ID=Os05t0214100-02;Name=Os05t0214100-02;Locus_id=Os05g0214100;Note=Conserved hypothetical protein.;Transcript_evidence=AK100400 (DDBJ%2C Best hit);ORF_evidence=B9FT74 (UniProt);NIAS_FLcDNA=J023086N14;TENOR=Os05t0214100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	7062010	7063152	.	+	.	Parent=Os05t0214100-02
Chr05	irgsp1_rep	CDS	7063153	7063416	.	+	0	Parent=Os05t0214100-02
Chr05	irgsp1_rep	three_prime_UTR	7063417	7063419	.	+	.	Parent=Os05t0214100-02
Chr05	irgsp1_rep	three_prime_UTR	7063524	7064866	.	+	.	Parent=Os05t0214100-02
Chr05	irgsp1_rep	three_prime_UTR	7065640	7066128	.	+	.	Parent=Os05t0214100-02
Chr05	irgsp1_rep	mRNA	7069759	7070559	.	+	.	ID=Os05t0214232-00;Name=Os05t0214232-00;Locus_id=Os05g0214232;Note=Hypothetical protein.;Transcript_evidence=CU406222 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os05t0214232-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	7069759	7069917	.	+	.	Parent=Os05t0214232-00
Chr05	irgsp1_rep	CDS	7069918	7070217	.	+	0	Parent=Os05t0214232-00
Chr05	irgsp1_rep	three_prime_UTR	7070218	7070559	.	+	.	Parent=Os05t0214232-00
Chr05	irgsp1_rep	mRNA	7082883	7085033	.	+	.	ID=Os05t0214300-01;Name=Os05t0214300-01;Locus_id=Os05g0214300;RAP-DB Gene Symbol Synonym(s)=OsSWEET3a;CGSNL Gene Symbol=SWEET3A;CGSNL Gene Name=SWEET3A;Oryzabase Gene Symbol Synonym(s)=OsSWEET3a%2C SWEET3a;Note=Bidirectional sugar transporter%2C Gibberellin (GA) and glucose transporter%2C Energy source during germination and at early stages of seedling growth;Transcript_evidence=Inferred from literature;ORF_evidence=Q0DJY3;GO=Cellular Component: integral component of membrane (GO:0016021);InterPro=SWEET sugar transporter (IPR004316);Manual Curation=October 28%2C 2020;Literature_PMID=33104219;Oryzabase=9092;TENOR=Os05t0214300-00
Chr05	irgsp1_rep	five_prime_UTR	7082883	7082928	.	+	.	Parent=Os05t0214300-01
Chr05	irgsp1_rep	CDS	7082929	7082965	.	+	0	Parent=Os05t0214300-01
Chr05	irgsp1_rep	CDS	7083035	7083071	.	+	2	Parent=Os05t0214300-01
Chr05	irgsp1_rep	CDS	7083165	7083387	.	+	1	Parent=Os05t0214300-01
Chr05	irgsp1_rep	CDS	7084217	7084378	.	+	0	Parent=Os05t0214300-01
Chr05	irgsp1_rep	CDS	7084680	7084799	.	+	0	Parent=Os05t0214300-01
Chr05	irgsp1_rep	CDS	7084872	7085033	.	+	0	Parent=Os05t0214300-01
Chr05	irgsp1_rep	mRNA	7087058	7088616	.	-	.	ID=Os05t0214400-00;Name=Os05t0214400-00;Locus_id=Os05g0214400;Note=Esterase/lipase/thioesterase domain containing protein.;Transcript_evidence=EU973156 (DDBJ);ORF_evidence=B6U7E1 (UniProt);TENOR=Os05t0214400-00;KEGG=Os05t0214400-00
Chr05	irgsp1_rep	five_prime_UTR	7088507	7088616	.	-	.	Parent=Os05t0214400-00
Chr05	irgsp1_rep	CDS	7088352	7088506	.	-	0	Parent=Os05t0214400-00
Chr05	irgsp1_rep	CDS	7088112	7088173	.	-	1	Parent=Os05t0214400-00
Chr05	irgsp1_rep	CDS	7087855	7087990	.	-	2	Parent=Os05t0214400-00
Chr05	irgsp1_rep	CDS	7087683	7087755	.	-	1	Parent=Os05t0214400-00
Chr05	irgsp1_rep	CDS	7087381	7087446	.	-	0	Parent=Os05t0214400-00
Chr05	irgsp1_rep	CDS	7087081	7087296	.	-	0	Parent=Os05t0214400-00
Chr05	irgsp1_rep	three_prime_UTR	7087058	7087080	.	-	.	Parent=Os05t0214400-00
Chr05	irgsp1_rep	mRNA	7113184	7113607	.	+	.	ID=Os05t0214800-01;Name=Os05t0214800-01;Locus_id=Os05g0214800;Note=Non-protein coding transcript.;Transcript_evidence=AK062760 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-106-G12;TENOR=Os05t0214800-01
Chr05	irgsp1_rep	exon	7113184	7113607	.	+	.	Parent=Os05t0214800-01
Chr05	irgsp1_rep	mRNA	7123870	7127870	.	+	.	ID=Os05t0214900-01;Name=Os05t0214900-01;Locus_id=Os05g0214900;Oryzabase Gene Symbol Synonym(s)=OsTBL48%2C TBL48;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 48;Note=Similar to A_IG002N01.14 protein.;Transcript_evidence=AK061081 (DDBJ%2C Best hit);ORF_evidence=O04621 (UniProt);NIAS_FLcDNA=006-206-F03;Oryzabase=21503;Expression=AK061081;TENOR=Os05t0214900-01;KEGG=Os05t0214900-01
Chr05	irgsp1_rep	five_prime_UTR	7123870	7123953	.	+	.	Parent=Os05t0214900-01
Chr05	irgsp1_rep	CDS	7123954	7124164	.	+	0	Parent=Os05t0214900-01
Chr05	irgsp1_rep	CDS	7125836	7126113	.	+	2	Parent=Os05t0214900-01
Chr05	irgsp1_rep	CDS	7126376	7126600	.	+	0	Parent=Os05t0214900-01
Chr05	irgsp1_rep	CDS	7127655	7127678	.	+	0	Parent=Os05t0214900-01
Chr05	irgsp1_rep	three_prime_UTR	7127679	7127870	.	+	.	Parent=Os05t0214900-01
Chr05	irgsp1_rep	mRNA	7134027	7135550	.	-	.	ID=Os05t0215000-04;Name=Os05t0215000-04;Locus_id=Os05g0215000;Oryzabase Gene Symbol Synonym(s)=OsBURP01%2C OsBURP1;Oryzabase Gene Name Synonym(s)=BURP domain-containing protein 1;Note=BURP domain containing protein.;Transcript_evidence=AK059729 (DDBJ%2C Best hit),AK060134 (DDBJ%2C Best hit),AK060149 (DDBJ%2C Best hit),AK103934 (DDBJ%2C Best hit),AK104171 (DDBJ%2C Best hit),AK104178 (DDBJ%2C Best hit),AK104216 (DDBJ%2C Best hit),AK104258 (DDBJ%2C Best hit),AK104285 (DDBJ%2C Best hit),AK104369 (DDBJ%2C Best hit),AK104485 (DDBJ%2C Best hit),AK104531 (DDBJ%2C Best hit),AK104575 (DDBJ%2C Best hit),AK104940 (DDBJ%2C Best hit),AK109415 (DDBJ%2C Best hit),AK119543 (DDBJ%2C Best hit);ORF_evidence=E0X6X2 (UniProt);NIAS_FLcDNA=006-201-E08,006-309-D04,006-310-D03,001-013-F06,006-301-B01,006-301-E06,006-306-B03,006-309-G02,001-007-D05,001-035-E05,006-301-H12,006-304-A12,006-307-A02,001-106-G01,006-304-E02,001-204-F03;Oryzabase=15041;Expression=AK059729;TENOR=Os05t0215000-04;KEGG=Os05t0215000-04
Chr05	irgsp1_rep	five_prime_UTR	7135483	7135550	.	-	.	Parent=Os05t0215000-04
Chr05	irgsp1_rep	CDS	7135447	7135482	.	-	0	Parent=Os05t0215000-04
Chr05	irgsp1_rep	CDS	7134482	7135258	.	-	0	Parent=Os05t0215000-04
Chr05	irgsp1_rep	three_prime_UTR	7134027	7134481	.	-	.	Parent=Os05t0215000-04
Chr05	irgsp1_rep	mRNA	7136907	7137963	.	+	.	ID=Os05t0215033-01;Name=Os05t0215033-01;Locus_id=Os05g0215033;Note=Hypothetical gene.;Transcript_evidence=AK287810 (DDBJ%2C Best hit);ORF_evidence=B8AZ79 (UniProt);NIAS_FLcDNA=J065179I10;TENOR=Os05t0215033-01;KEGG=Os05t0215033-01
Chr05	irgsp1_rep	five_prime_UTR	7136907	7137187	.	+	.	Parent=Os05t0215033-01
Chr05	irgsp1_rep	CDS	7137188	7137784	.	+	0	Parent=Os05t0215033-01
Chr05	irgsp1_rep	three_prime_UTR	7137785	7137963	.	+	.	Parent=Os05t0215033-01
Chr05	irgsp1_rep	mRNA	7136965	7137684	.	-	.	ID=Os05t0215066-00;Name=Os05t0215066-00;Locus_id=Os05g0215066;Oryzabase Gene Symbol Synonym(s)=OsBURP06%2C OsBURP6;Oryzabase Gene Name Synonym(s)=BURP domain-containing protein 6;Note=BURP domain containing protein.;Transcript_evidence=Q6I5B2 (UniProt);ORF_evidence=Q6I5B2 (UniProt);InterPro=BURP (IPR004873);Oryzabase=15045;TENOR=Os05t0215066-00
Chr05	irgsp1_rep	CDS	7136965	7137684	.	-	0	Parent=Os05t0215066-00
Chr05	irgsp1_rep	mRNA	7149662	7150094	.	-	.	ID=Os05t0215183-00;Name=Os05t0215183-00;Locus_id=Os05g0215183;Note=Conserved hypothetical protein.;Transcript_evidence=AK374463 (DDBJ);ORF_evidence=Q6I5X1 (UniProt);TENOR=Os05t0215183-00
Chr05	irgsp1_rep	five_prime_UTR	7150067	7150094	.	-	.	Parent=Os05t0215183-00
Chr05	irgsp1_rep	CDS	7149662	7150066	.	-	0	Parent=Os05t0215183-00
Chr05	irgsp1_rep	mRNA	7152334	7153941	.	+	.	ID=Os05t0215300-01;Name=Os05t0215300-01;Locus_id=Os05g0215300;CGSNL Gene Symbol=UGT72F1;CGSNL Gene Name=UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 72F1;Oryzabase Gene Name Synonym(s)=Hydroquinone UGT%2C UDP-glucose-dependent glycosyltransferase 72F1;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK288134 (DDBJ%2C Best hit);ORF_evidence=NP_001174279.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J080303H04;Oryzabase=18242;TENOR=Os05t0215300-01;KEGG=Os05t0215300-01 (EC:2.4.1.218)
Chr05	irgsp1_rep	five_prime_UTR	7152334	7152445	.	+	.	Parent=Os05t0215300-01
Chr05	irgsp1_rep	CDS	7152446	7153918	.	+	0	Parent=Os05t0215300-01
Chr05	irgsp1_rep	three_prime_UTR	7153919	7153941	.	+	.	Parent=Os05t0215300-01
Chr05	irgsp1_rep	mRNA	7158206	7159717	.	-	.	ID=Os05t0215500-01;Name=Os05t0215500-01;Locus_id=Os05g0215500;Note=Hypothetical protein.;Transcript_evidence=AK070424 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023050J01;TENOR=Os05t0215500-01
Chr05	irgsp1_rep	five_prime_UTR	7158905	7159717	.	-	.	Parent=Os05t0215500-01
Chr05	irgsp1_rep	CDS	7158575	7158904	.	-	0	Parent=Os05t0215500-01
Chr05	irgsp1_rep	three_prime_UTR	7158206	7158574	.	-	.	Parent=Os05t0215500-01
Chr05	irgsp1_rep	mRNA	7161628	7168180	.	+	.	ID=Os05t0215600-01;Name=Os05t0215600-01;Locus_id=Os05g0215600;Note=Protein of unknown function DUF2358 domain containing protein.;Transcript_evidence=AK066642 (DDBJ%2C Best hit);ORF_evidence=F2D860 (UniProt);InterPro=Protein of unknown function DUF2358 (IPR018790);NIAS_FLcDNA=J013073I22;Expression=AK066642;TENOR=Os05t0215600-01;KEGG=Os05t0215600-01
Chr05	irgsp1_rep	five_prime_UTR	7161628	7161742	.	+	.	Parent=Os05t0215600-01
Chr05	irgsp1_rep	CDS	7161743	7162161	.	+	0	Parent=Os05t0215600-01
Chr05	irgsp1_rep	CDS	7167384	7167867	.	+	1	Parent=Os05t0215600-01
Chr05	irgsp1_rep	three_prime_UTR	7167868	7168180	.	+	.	Parent=Os05t0215600-01
Chr05	irgsp1_rep	mRNA	7161686	7164323	.	+	.	ID=Os05t0215600-02;Name=Os05t0215600-02;Locus_id=Os05g0215600;Note=Protein of unknown function DUF2358 domain containing protein.;Transcript_evidence=AK099688 (DDBJ%2C Best hit);ORF_evidence=XP_002439459.1 (RefSeq);NIAS_FLcDNA=J013073A18;Expression=AK099688;TENOR=Os05t0215600-02;KEGG=Os05t0215600-02
Chr05	irgsp1_rep	five_prime_UTR	7161686	7161742	.	+	.	Parent=Os05t0215600-02
Chr05	irgsp1_rep	CDS	7161743	7162189	.	+	0	Parent=Os05t0215600-02
Chr05	irgsp1_rep	three_prime_UTR	7162190	7164323	.	+	.	Parent=Os05t0215600-02
Chr05	irgsp1_rep	mRNA	7168867	7169563	.	-	.	ID=Os05t0215700-02;Name=Os05t0215700-02;Locus_id=Os05g0215700;Note=Conserved hypothetical protein.;Transcript_evidence=AK119724 (DDBJ%2C Best hit),AK107771 (DDBJ%2C Best hit);ORF_evidence=B8AZ81 (UniProt);NIAS_FLcDNA=002-157-G12,002-133-B07;Expression=AK119724;TENOR=Os05t0215700-02;KEGG=Os05t0215700-02
Chr05	irgsp1_rep	five_prime_UTR	7169454	7169563	.	-	.	Parent=Os05t0215700-02
Chr05	irgsp1_rep	CDS	7169178	7169453	.	-	0	Parent=Os05t0215700-02
Chr05	irgsp1_rep	three_prime_UTR	7168867	7169177	.	-	.	Parent=Os05t0215700-02
Chr05	irgsp1_rep	mRNA	7171184	7176568	.	-	.	ID=Os05t0215800-01;Name=Os05t0215800-01;Locus_id=Os05g0215800;Note=Protein of unknown function DUF250 domain containing protein.;Transcript_evidence=AK064851 (DDBJ%2C Best hit);ORF_evidence=NP_001149060.1 (RefSeq);InterPro=Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=J013000H04;Expression=AK064851;TENOR=Os05t0215800-01;KEGG=Os05t0215800-01
Chr05	irgsp1_rep	five_prime_UTR	7176370	7176568	.	-	.	Parent=Os05t0215800-01
Chr05	irgsp1_rep	five_prime_UTR	7174514	7174565	.	-	.	Parent=Os05t0215800-01
Chr05	irgsp1_rep	CDS	7174384	7174513	.	-	0	Parent=Os05t0215800-01
Chr05	irgsp1_rep	CDS	7174073	7174257	.	-	2	Parent=Os05t0215800-01
Chr05	irgsp1_rep	CDS	7173791	7173991	.	-	0	Parent=Os05t0215800-01
Chr05	irgsp1_rep	CDS	7173183	7173344	.	-	0	Parent=Os05t0215800-01
Chr05	irgsp1_rep	CDS	7171600	7171929	.	-	0	Parent=Os05t0215800-01
Chr05	irgsp1_rep	three_prime_UTR	7171184	7171599	.	-	.	Parent=Os05t0215800-01
Chr05	irgsp1_rep	mRNA	7212720	7216703	.	+	.	ID=Os05t0216950-00;Name=Os05t0216950-00;Locus_id=Os05g0216950;Note=NB-ARC domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FIW4 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os05t0216950-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	7212720	7214412	.	+	0	Parent=Os05t0216950-00
Chr05	irgsp1_rep	CDS	7215643	7216703	.	+	2	Parent=Os05t0216950-00
Chr05	irgsp1_rep	mRNA	7219354	7219947	.	-	.	ID=Os05t0217000-01;Name=Os05t0217000-01;Locus_id=Os05g0217000;CGSNL Gene Symbol=AGP23;CGSNL Gene Name=ARABINOGALACTAN PROTEIN 23;Oryzabase Gene Symbol Synonym(s)=OsAGP23;Oryzabase Gene Name Synonym(s)=Arabinogalactan protein 23;Note=Protein of unknown function DUF1070 family protein.;Transcript_evidence=AK062517 (DDBJ%2C Best hit);ORF_evidence=NP_001148394.1 (RefSeq);InterPro=Arabinogalactan peptide%2C AGP (IPR009424);NIAS_FLcDNA=001-104-C09;Oryzabase=11316;Expression=AK062517;TENOR=Os05t0217000-01;KEGG=Os05t0217000-01
Chr05	irgsp1_rep	five_prime_UTR	7219896	7219947	.	-	.	Parent=Os05t0217000-01
Chr05	irgsp1_rep	CDS	7219799	7219895	.	-	0	Parent=Os05t0217000-01
Chr05	irgsp1_rep	CDS	7219557	7219663	.	-	2	Parent=Os05t0217000-01
Chr05	irgsp1_rep	three_prime_UTR	7219354	7219556	.	-	.	Parent=Os05t0217000-01
Chr05	irgsp1_rep	mRNA	7249980	7251356	.	+	.	ID=Os05t0217700-01;Name=Os05t0217700-01;Locus_id=Os05g0217700;Oryzabase Gene Symbol Synonym(s)=OsBURP07%2C OsBURP7;Oryzabase Gene Name Synonym(s)=BURP domain-containing protein 7;Note=BURP domain containing protein.;Transcript_evidence=AK061473 (DDBJ%2C Best hit),AK105947 (DDBJ%2C Best hit),AK109427 (DDBJ%2C Best hit);ORF_evidence=Q60E34 (UniProt);InterPro=BURP (IPR004873);NIAS_FLcDNA=006-308-E12,001-205-C07,006-307-C03;Oryzabase=15046;TENOR=Os05t0217700-01
Chr05	irgsp1_rep	five_prime_UTR	7249980	7250046	.	+	.	Parent=Os05t0217700-01
Chr05	irgsp1_rep	CDS	7250047	7250082	.	+	0	Parent=Os05t0217700-01
Chr05	irgsp1_rep	CDS	7250372	7250881	.	+	0	Parent=Os05t0217700-01
Chr05	irgsp1_rep	three_prime_UTR	7250882	7251356	.	+	.	Parent=Os05t0217700-01
Chr05	irgsp1_rep	mRNA	7255510	7257163	.	+	.	ID=Os05t0217800-01;Name=Os05t0217800-01;Locus_id=Os05g0217800;Oryzabase Gene Symbol Synonym(s)=OsBURP02%2C OsBURP2;Oryzabase Gene Name Synonym(s)=BURP domain-containing protein 2;Note=BURP domain containing protein.;Transcript_evidence=AK104492 (DDBJ%2C Best hit),AK067171 (DDBJ%2C Best hit),AK103916 (DDBJ%2C Best hit),AK104099 (DDBJ%2C Best hit),AK104232 (DDBJ%2C Best hit),AK104233 (DDBJ%2C Best hit),AK104234 (DDBJ%2C Best hit),AK104239 (DDBJ%2C Best hit),AK104402 (DDBJ%2C Best hit),AK104459 (DDBJ%2C Best hit),AK104491 (DDBJ%2C Best hit),AK104493 (DDBJ%2C Best hit),AK104497 (DDBJ%2C Best hit),AK104506 (DDBJ%2C Best hit),AK104510 (DDBJ%2C Best hit),AK104513 (DDBJ%2C Best hit),AK104534 (DDBJ%2C Best hit),AK104540 (DDBJ%2C Best hit),AK104556 (DDBJ%2C Best hit),AK104565 (DDBJ%2C Best hit),AK104566 (DDBJ%2C Best hit),AK104567 (DDBJ%2C Best hit),AK104572 (DDBJ%2C Best hit),AK104579 (DDBJ%2C Best hit),AK104582 (DDBJ%2C Best hit),AK104584 (DDBJ%2C Best hit),AK104585 (DDBJ%2C Best hit),AK104604 (DDBJ%2C Best hit),AK104615 (DDBJ%2C Best hit),AK104616 (DDBJ%2C Best hit),AK104631 (DDBJ%2C Best hit),AK104640 (DDBJ%2C Best hit),AK105889 (DDBJ%2C Best hit),AK105894 (DDBJ%2C Best hit),AK106077 (DDBJ%2C Best hit),AK106086 (DDBJ%2C Best hit),AK106097 (DDBJ%2C Best hit),AK106120 (DDBJ%2C Best hit),AK106148 (DDBJ%2C Best hit),AK106187 (DDBJ%2C Best hit),AK106191 (DDBJ%2C Best hit),AK106198 (DDBJ%2C Best hit),AK106205 (DDBJ%2C Best hit),AK109406 (DDBJ%2C Best hit),AK109410 (DDBJ%2C Best hit),AK109418 (DDBJ%2C Best hit),AK109419 (DDBJ%2C Best hit),AK119525 (DDBJ%2C Best hit),AK119526 (DDBJ%2C Best hit),AK119541 (DDBJ%2C Best hit),AK119549 (DDBJ%2C Best hit),AK119556 (DDBJ%2C Best hit),AK119898 (DDBJ%2C Best hit);ORF_evidence=E0X6X2 (UniProt);InterPro=BURP (IPR004873);NIAS_FLcDNA=006-302-B12,J013097D16,001-013-A04,006-201-E12,006-307-E11,006-307-F02,006-307-F09,006-308-A10,006-202-F12,006-301-B08,006-302-B11,006-302-C01,006-302-D05,006-302-G06,006-302-H07,006-303-A12,006-304-D11,006-305-A09,006-305-G01,006-306-E04,006-306-E08,006-306-F06,006-306-G10,006-307-B09,006-307-E06,006-307-F05,006-307-F08,006-309-A06,006-309-F03,006-309-F07,006-310-C04,006-310-E12,001-204-E05,001-204-E11,001-207-A03,001-207-B03,001-207-C02,001-207-E10,001-207-H05,001-208-D09,001-208-E02,001-208-F02,001-208-G01,006-302-H09,006-303-E02,006-305-C07,006-305-D06,001-202-F03,001-202-F07,001-204-D01,001-207-D10,001-208-F09,002-180-E04;Oryzabase=15042;TENOR=Os05t0217800-01
Chr05	irgsp1_rep	five_prime_UTR	7255510	7255578	.	+	.	Parent=Os05t0217800-01
Chr05	irgsp1_rep	CDS	7255579	7255614	.	+	0	Parent=Os05t0217800-01
Chr05	irgsp1_rep	CDS	7256140	7256967	.	+	0	Parent=Os05t0217800-01
Chr05	irgsp1_rep	three_prime_UTR	7256968	7257163	.	+	.	Parent=Os05t0217800-01
Chr05	irgsp1_rep	mRNA	7255511	7257163	.	+	.	ID=Os05t0217800-02;Name=Os05t0217800-02;Locus_id=Os05g0217800;Oryzabase Gene Symbol Synonym(s)=OsBURP02%2C OsBURP2;Oryzabase Gene Name Synonym(s)=BURP domain-containing protein 2;Note=Similar to BURP domain-containing protein 2.;Transcript_evidence=AK106094 (DDBJ%2C Best hit);ORF_evidence=E0X6X2 (UniProt);InterPro=BURP (IPR004873);NIAS_FLcDNA=001-207-B11;Oryzabase=15042;Expression=AK106094;TENOR=Os05t0217800-02;KEGG=Os05t0217800-02
Chr05	irgsp1_rep	five_prime_UTR	7255511	7255849	.	+	.	Parent=Os05t0217800-02
Chr05	irgsp1_rep	CDS	7255850	7255876	.	+	0	Parent=Os05t0217800-02
Chr05	irgsp1_rep	CDS	7256140	7256967	.	+	0	Parent=Os05t0217800-02
Chr05	irgsp1_rep	three_prime_UTR	7256968	7257163	.	+	.	Parent=Os05t0217800-02
Chr05	irgsp1_rep	mRNA	7259892	7265931	.	+	.	ID=Os05t0217900-00;Name=Os05t0217900-00;Locus_id=Os05g0217900;Note=Hypothetical conserved gene.;Transcript_evidence=CU406603 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os05t0217900-00;KEGG=Os05t0217900-00
Chr05	irgsp1_rep	CDS	7259892	7260235	.	+	0	Parent=Os05t0217900-00
Chr05	irgsp1_rep	CDS	7264877	7264922	.	+	1	Parent=Os05t0217900-00
Chr05	irgsp1_rep	CDS	7265594	7265647	.	+	0	Parent=Os05t0217900-00
Chr05	irgsp1_rep	three_prime_UTR	7265648	7265931	.	+	.	Parent=Os05t0217900-00
Chr05	irgsp1_rep	mRNA	7262222	7264731	.	-	.	ID=Os05t0217950-00;Name=Os05t0217950-00;Locus_id=Os05g0217950;Note=Non-protein coding transcript.;Transcript_evidence=tplb0043a14 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os05t0217950-00
Chr05	irgsp1_rep	exon	7264195	7264731	.	-	.	Parent=Os05t0217950-00
Chr05	irgsp1_rep	exon	7263699	7263750	.	-	.	Parent=Os05t0217950-00
Chr05	irgsp1_rep	exon	7263289	7263603	.	-	.	Parent=Os05t0217950-00
Chr05	irgsp1_rep	exon	7262222	7263137	.	-	.	Parent=Os05t0217950-00
Chr05	irgsp1_rep	mRNA	7263016	7264755	.	+	.	ID=Os05t0218001-00;Name=Os05t0218001-00;Locus_id=Os05g0218001;Note=Myb/SANT-like domain domain containing protein.;Transcript_evidence=BT039927 (DDBJ);ORF_evidence=NP_001176912.1 (RefSeq);InterPro=Myb/SANT-like domain (IPR024752);TENOR=Os05t0218001-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	7263016	7263172	.	+	0	Parent=Os05t0218001-00
Chr05	irgsp1_rep	CDS	7263263	7263573	.	+	2	Parent=Os05t0218001-00
Chr05	irgsp1_rep	CDS	7263666	7263741	.	+	0	Parent=Os05t0218001-00
Chr05	irgsp1_rep	CDS	7264188	7264453	.	+	2	Parent=Os05t0218001-00
Chr05	irgsp1_rep	three_prime_UTR	7264454	7264755	.	+	.	Parent=Os05t0218001-00
Chr05	irgsp1_rep	mRNA	7271691	7272578	.	-	.	ID=Os05t0218100-01;Name=Os05t0218100-01;Locus_id=Os05g0218100;Oryzabase Gene Symbol Synonym(s)=OsEnS-74;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 74;Note=Carbohydrate/puine kinase%2C PfkB%2C conserved site domain containing protein.;Transcript_evidence=AK108327 (DDBJ%2C Best hit);ORF_evidence=A2Y1N1 (UniProt);NIAS_FLcDNA=002-141-H08;Oryzabase=18392;Expression=AK108327;TENOR=Os05t0218100-01;KEGG=Os05t0218100-01
Chr05	irgsp1_rep	five_prime_UTR	7272532	7272578	.	-	.	Parent=Os05t0218100-01
Chr05	irgsp1_rep	CDS	7271833	7272531	.	-	0	Parent=Os05t0218100-01
Chr05	irgsp1_rep	three_prime_UTR	7271691	7271832	.	-	.	Parent=Os05t0218100-01
Chr05	irgsp1_rep	mRNA	7279432	7284634	.	-	.	ID=Os05t0218400-01;Name=Os05t0218400-01;Locus_id=Os05g0218400;RAP-DB Gene Symbol Synonym(s)=Z15;RAP-DB Gene Name Synonym(s)=Zebra leaf 15;CGSNL Gene Symbol=Z15;CGSNL Gene Name=ZEBRA LEAF 15;Oryzabase Gene Symbol Synonym(s)=OsRLCK181%2C RLCK181%2C OsZ15;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 181%2C Zebra leaf 15;Note=Receptor-like protein kinase%2C Response to moderate low temperature;Transcript_evidence=AK243520;ORF_evidence=A0A0N7KKC7;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),Protein kinase domain (IPR000719),Serine-threonine/tyrosine-protein kinase%2C catalytic domain (IPR001245),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J100075I22;Manual Curation=November 22%2C 2019;Literature_PMID=31732821;Oryzabase=18882;TENOR=Os05t0218400-01;KEGG=Os05t0218400-01;Subcellular location=plasma membrane (GO:0005886)
Chr05	irgsp1_rep	five_prime_UTR	7284463	7284634	.	-	.	Parent=Os05t0218400-01
Chr05	irgsp1_rep	CDS	7283841	7284462	.	-	0	Parent=Os05t0218400-01
Chr05	irgsp1_rep	CDS	7282587	7283126	.	-	2	Parent=Os05t0218400-01
Chr05	irgsp1_rep	CDS	7281816	7281902	.	-	2	Parent=Os05t0218400-01
Chr05	irgsp1_rep	CDS	7281642	7281712	.	-	2	Parent=Os05t0218400-01
Chr05	irgsp1_rep	CDS	7281211	7281287	.	-	0	Parent=Os05t0218400-01
Chr05	irgsp1_rep	CDS	7280731	7280878	.	-	1	Parent=Os05t0218400-01
Chr05	irgsp1_rep	CDS	7280132	7280293	.	-	0	Parent=Os05t0218400-01
Chr05	irgsp1_rep	CDS	7279624	7279944	.	-	0	Parent=Os05t0218400-01
Chr05	irgsp1_rep	three_prime_UTR	7279432	7279623	.	-	.	Parent=Os05t0218400-01
Chr05	irgsp1_rep	mRNA	7279447	7282669	.	+	.	ID=Os05t0218663-00;Name=Os05t0218663-00;Locus_id=Os05g0218663;Note=Non-protein coding transcript.;Transcript_evidence=BT016904 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0218663-00
Chr05	irgsp1_rep	exon	7279447	7279948	.	+	.	Parent=Os05t0218663-00
Chr05	irgsp1_rep	exon	7280136	7280302	.	+	.	Parent=Os05t0218663-00
Chr05	irgsp1_rep	exon	7280735	7280867	.	+	.	Parent=Os05t0218663-00
Chr05	irgsp1_rep	exon	7281198	7281289	.	+	.	Parent=Os05t0218663-00
Chr05	irgsp1_rep	exon	7281647	7281714	.	+	.	Parent=Os05t0218663-00
Chr05	irgsp1_rep	exon	7281818	7281911	.	+	.	Parent=Os05t0218663-00
Chr05	irgsp1_rep	exon	7282595	7282669	.	+	.	Parent=Os05t0218663-00
Chr05	irgsp1_rep	mRNA	7325938	7329693	.	+	.	ID=Os05t0218981-00;Name=Os05t0218981-00;Locus_id=Os05g0218981;Note=Hypothetical protein.;Transcript_evidence=tplb0057a09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0218981-00
Chr05	irgsp1_rep	five_prime_UTR	7325938	7327131	.	+	.	Parent=Os05t0218981-00
Chr05	irgsp1_rep	CDS	7327132	7327503	.	+	0	Parent=Os05t0218981-00
Chr05	irgsp1_rep	three_prime_UTR	7327504	7327973	.	+	.	Parent=Os05t0218981-00
Chr05	irgsp1_rep	three_prime_UTR	7329243	7329693	.	+	.	Parent=Os05t0218981-00
Chr05	irgsp1_rep	mRNA	7332186	7334152	.	-	.	ID=Os05t0219300-00;Name=Os05t0219300-00;Locus_id=Os05g0219300;Note=Similar to HAT family dimerisation domain containing protein.;Transcript_evidence=EU973161 (DDBJ);ORF_evidence=Q53RM1 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein dimerization activity (GO:0046983);InterPro=HAT dimerisation (IPR008906),Ribonuclease H-like (IPR012337);TENOR=Os05t0219300-00
Chr05	irgsp1_rep	five_prime_UTR	7334085	7334152	.	-	.	Parent=Os05t0219300-00
Chr05	irgsp1_rep	CDS	7332186	7334084	.	-	0	Parent=Os05t0219300-00
Chr05	irgsp1_rep	mRNA	7367324	7374483	.	-	.	ID=Os05t0219800-01;Name=Os05t0219800-01;Locus_id=Os05g0219800;Note=DNA/RNA helicase%2C ATP-dependent%2C DEAH-box type%2C conserved site domain containing protein.;Transcript_evidence=AK102822 (DDBJ%2C Best hit);ORF_evidence=A2Y1P2 (UniProt);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP-dependent DNA helicase activity (GO:0004003),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026),Molecular Function: hydrolase activity%2C acting on acid anhydrides (GO:0016817),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides (GO:0016818);InterPro=DNA/RNA helicase%2C ATP-dependent%2C DEAH-box type%2C conserved site (IPR002464),Helicase-like%2C DEXD box c2 type (IPR006554),Helicase%2C ATP-dependent%2C c2 type (IPR006555),DEAD2 (IPR010614),DNA helicase (DNA repair)%2C Rad3 type (IPR013020),DEAD-like helicase (IPR014001),Helicase%2C superfamily 1/2%2C ATP-binding domain%2C DinG/Rad3-type (IPR014013);NIAS_FLcDNA=J033108P05;TENOR=Os05t0219800-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	7374482	7374483	.	-	.	Parent=Os05t0219800-01
Chr05	irgsp1_rep	CDS	7374398	7374481	.	-	0	Parent=Os05t0219800-01
Chr05	irgsp1_rep	CDS	7374237	7374372	.	-	0	Parent=Os05t0219800-01
Chr05	irgsp1_rep	CDS	7373612	7374163	.	-	2	Parent=Os05t0219800-01
Chr05	irgsp1_rep	CDS	7373444	7373526	.	-	2	Parent=Os05t0219800-01
Chr05	irgsp1_rep	CDS	7372379	7372732	.	-	0	Parent=Os05t0219800-01
Chr05	irgsp1_rep	CDS	7371589	7371843	.	-	0	Parent=Os05t0219800-01
Chr05	irgsp1_rep	CDS	7371275	7371517	.	-	0	Parent=Os05t0219800-01
Chr05	irgsp1_rep	CDS	7370962	7371183	.	-	0	Parent=Os05t0219800-01
Chr05	irgsp1_rep	CDS	7369898	7370462	.	-	0	Parent=Os05t0219800-01
Chr05	irgsp1_rep	CDS	7369593	7369798	.	-	2	Parent=Os05t0219800-01
Chr05	irgsp1_rep	three_prime_UTR	7369540	7369592	.	-	.	Parent=Os05t0219800-01
Chr05	irgsp1_rep	three_prime_UTR	7367979	7368070	.	-	.	Parent=Os05t0219800-01
Chr05	irgsp1_rep	three_prime_UTR	7367324	7367636	.	-	.	Parent=Os05t0219800-01
Chr05	irgsp1_rep	mRNA	7378697	7381005	.	-	.	ID=Os05t0219900-01;Name=Os05t0219900-01;Locus_id=Os05g0219900;Oryzabase Gene Symbol Synonym(s)=SLAC;Oryzabase Gene Name Synonym(s)=SLOW ANION CHANNEL;Note=C4-dicarboxylate transporter/malic acid transport protein family protein.;Transcript_evidence=AK120886 (DDBJ%2C Best hit);ORF_evidence=B6SWN8 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=C4-dicarboxylate transporter/malic acid transport protein (IPR004695);NIAS_FLcDNA=J023028P22;Oryzabase=21759;Expression=AK120886;TENOR=Os05t0219900-01;KEGG=Os05t0219900-01
Chr05	irgsp1_rep	five_prime_UTR	7380958	7381005	.	-	.	Parent=Os05t0219900-01
Chr05	irgsp1_rep	CDS	7380796	7380957	.	-	0	Parent=Os05t0219900-01
Chr05	irgsp1_rep	CDS	7380131	7380688	.	-	0	Parent=Os05t0219900-01
Chr05	irgsp1_rep	CDS	7378890	7380038	.	-	0	Parent=Os05t0219900-01
Chr05	irgsp1_rep	three_prime_UTR	7378697	7378889	.	-	.	Parent=Os05t0219900-01
Chr05	irgsp1_rep	mRNA	7398553	7403297	.	-	.	ID=Os05t0220100-01;Name=Os05t0220100-01;Locus_id=Os05g0220100;Note=Per1-like family protein.;Transcript_evidence=AK122045 (DDBJ%2C Best hit);ORF_evidence=NP_001147973.1 (RefSeq);InterPro=Per1-like (IPR007217);NIAS_FLcDNA=J033113P15;Expression=AK122045;TENOR=Os05t0220100-01;KEGG=Os05t0220100-01
Chr05	irgsp1_rep	five_prime_UTR	7403005	7403297	.	-	.	Parent=Os05t0220100-01
Chr05	irgsp1_rep	five_prime_UTR	7402876	7402911	.	-	.	Parent=Os05t0220100-01
Chr05	irgsp1_rep	CDS	7402766	7402875	.	-	0	Parent=Os05t0220100-01
Chr05	irgsp1_rep	CDS	7400137	7400401	.	-	1	Parent=Os05t0220100-01
Chr05	irgsp1_rep	CDS	7399847	7400046	.	-	0	Parent=Os05t0220100-01
Chr05	irgsp1_rep	CDS	7399562	7399749	.	-	1	Parent=Os05t0220100-01
Chr05	irgsp1_rep	CDS	7398918	7399204	.	-	2	Parent=Os05t0220100-01
Chr05	irgsp1_rep	three_prime_UTR	7398553	7398917	.	-	.	Parent=Os05t0220100-01
Chr05	irgsp1_rep	mRNA	7406509	7408041	.	-	.	ID=Os05t0220300-00;Name=Os05t0220300-00;Locus_id=Os05g0220300;Note=Similar to pollen allergen Phl p 11.;Transcript_evidence=BT088231 (DDBJ);ORF_evidence=NP_001150330.1 (RefSeq);InterPro=Pollen Ole e 1 allergen/extensin (IPR006041);TENOR=Os05t0220300-00
Chr05	irgsp1_rep	five_prime_UTR	7407949	7408041	.	-	.	Parent=Os05t0220300-00
Chr05	irgsp1_rep	CDS	7407923	7407948	.	-	0	Parent=Os05t0220300-00
Chr05	irgsp1_rep	CDS	7406509	7406977	.	-	1	Parent=Os05t0220300-00
Chr05	irgsp1_rep	mRNA	7415240	7416708	.	+	.	ID=Os05t0220500-00;Name=Os05t0220500-00;Locus_id=Os05g0220500;Note=Conserved hypothetical protein.;Transcript_evidence=AK355396 (DDBJ);ORF_evidence=B9FN58 (UniProt);TENOR=Os05t0220500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	7415240	7416655	.	+	0	Parent=Os05t0220500-00
Chr05	irgsp1_rep	three_prime_UTR	7416656	7416708	.	+	.	Parent=Os05t0220500-00
Chr05	irgsp1_rep	mRNA	7418022	7422194	.	-	.	ID=Os05t0220600-01;Name=Os05t0220600-01;Locus_id=Os05g0220600;Oryzabase Gene Symbol Synonym(s)=OsRhmbd12%2C RHMBD12;Oryzabase Gene Name Synonym(s)=Rhomboid 12%2C RHOMBOID 12;Note=Peptidase S54%2C rhomboid domain containing protein.;Transcript_evidence=AK073669 (DDBJ%2C Best hit);ORF_evidence=B6TJT4 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Cellular Component: integral to membrane (GO:0016021),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S54%2C rhomboid (IPR002610),Peptidase S54%2C rhomboid domain (IPR022764);NIAS_FLcDNA=J033052F18;Oryzabase=20068;Expression=AK073669;TENOR=Os05t0220600-01;KEGG=Os05t0220600-01
Chr05	irgsp1_rep	five_prime_UTR	7422147	7422194	.	-	.	Parent=Os05t0220600-01
Chr05	irgsp1_rep	CDS	7421972	7422146	.	-	0	Parent=Os05t0220600-01
Chr05	irgsp1_rep	CDS	7421747	7421865	.	-	2	Parent=Os05t0220600-01
Chr05	irgsp1_rep	CDS	7420980	7421065	.	-	0	Parent=Os05t0220600-01
Chr05	irgsp1_rep	CDS	7420750	7420790	.	-	1	Parent=Os05t0220600-01
Chr05	irgsp1_rep	CDS	7420501	7420667	.	-	2	Parent=Os05t0220600-01
Chr05	irgsp1_rep	CDS	7420347	7420409	.	-	0	Parent=Os05t0220600-01
Chr05	irgsp1_rep	CDS	7418476	7418655	.	-	0	Parent=Os05t0220600-01
Chr05	irgsp1_rep	three_prime_UTR	7418022	7418475	.	-	.	Parent=Os05t0220600-01
Chr05	irgsp1_rep	mRNA	7432324	7438250	.	+	.	ID=Os05t0220900-01;Name=Os05t0220900-01;Locus_id=Os05g0220900;Note=Prefoldin domain containing protein.;Transcript_evidence=AK109456 (DDBJ%2C Best hit);ORF_evidence=B8AZ94 (UniProt);NIAS_FLcDNA=001-119-D12;Expression=AK109456;TENOR=Os05t0220900-01;KEGG=Os05t0220900-01
Chr05	irgsp1_rep	five_prime_UTR	7432324	7432586	.	+	.	Parent=Os05t0220900-01
Chr05	irgsp1_rep	CDS	7432587	7433063	.	+	0	Parent=Os05t0220900-01
Chr05	irgsp1_rep	CDS	7436110	7436211	.	+	0	Parent=Os05t0220900-01
Chr05	irgsp1_rep	CDS	7437290	7437565	.	+	0	Parent=Os05t0220900-01
Chr05	irgsp1_rep	CDS	7437837	7438037	.	+	0	Parent=Os05t0220900-01
Chr05	irgsp1_rep	three_prime_UTR	7438038	7438250	.	+	.	Parent=Os05t0220900-01
Chr05	irgsp1_rep	mRNA	7432379	7436131	.	+	.	ID=Os05t0220900-02;Name=Os05t0220900-02;Locus_id=Os05g0220900;Note=Hypothetical conserved gene.;Transcript_evidence=AK109172 (DDBJ%2C Best hit);ORF_evidence=B8AZ94 (UniProt);NIAS_FLcDNA=002-155-H07;TENOR=Os05t0220900-02
Chr05	irgsp1_rep	five_prime_UTR	7432379	7432586	.	+	.	Parent=Os05t0220900-02
Chr05	irgsp1_rep	CDS	7432587	7433063	.	+	0	Parent=Os05t0220900-02
Chr05	irgsp1_rep	CDS	7436110	7436131	.	+	0	Parent=Os05t0220900-02
Chr05	irgsp1_rep	mRNA	7446347	7450279	.	-	.	ID=Os05t0221200-01;Name=Os05t0221200-01;Locus_id=Os05g0221200;Note=Similar to 2o545-prov protein.;Transcript_evidence=AK109378 (DDBJ%2C Best hit);ORF_evidence=A2Y1Q0 (UniProt);InterPro=Protein of unknown function DUF538 (IPR007493);NIAS_FLcDNA=006-209-G04;Expression=AK109378;TENOR=Os05t0221200-01;KEGG=Os05t0221200-01
Chr05	irgsp1_rep	five_prime_UTR	7450084	7450279	.	-	.	Parent=Os05t0221200-01
Chr05	irgsp1_rep	five_prime_UTR	7447405	7447528	.	-	.	Parent=Os05t0221200-01
Chr05	irgsp1_rep	five_prime_UTR	7447229	7447292	.	-	.	Parent=Os05t0221200-01
Chr05	irgsp1_rep	CDS	7447190	7447228	.	-	0	Parent=Os05t0221200-01
Chr05	irgsp1_rep	CDS	7446554	7447102	.	-	0	Parent=Os05t0221200-01
Chr05	irgsp1_rep	three_prime_UTR	7446347	7446553	.	-	.	Parent=Os05t0221200-01
Chr05	irgsp1_rep	mRNA	7446343	7450249	.	-	.	ID=Os05t0221200-02;Name=Os05t0221200-02;Locus_id=Os05g0221200;Note=Protein of unknown function DUF538 domain containing protein.;Transcript_evidence=AK070757 (DDBJ%2C Best hit);ORF_evidence=A2Y1Q0 (UniProt);InterPro=Protein of unknown function DUF538 (IPR007493);NIAS_FLcDNA=J023064E04;TENOR=Os05t0221200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	7450084	7450249	.	-	.	Parent=Os05t0221200-02
Chr05	irgsp1_rep	five_prime_UTR	7447405	7447528	.	-	.	Parent=Os05t0221200-02
Chr05	irgsp1_rep	five_prime_UTR	7447070	7447292	.	-	.	Parent=Os05t0221200-02
Chr05	irgsp1_rep	CDS	7446554	7447069	.	-	0	Parent=Os05t0221200-02
Chr05	irgsp1_rep	three_prime_UTR	7446343	7446553	.	-	.	Parent=Os05t0221200-02
Chr05	irgsp1_rep	mRNA	7455582	7461042	.	-	.	ID=Os05t0221400-01;Name=Os05t0221400-01;Locus_id=Os05g0221400;Note=Similar to 2o545-prov protein.;Transcript_evidence=AK072327 (DDBJ%2C Best hit);ORF_evidence=B4G0U8 (UniProt);InterPro=Domain of unknown function DUF814 (IPR008532);NIAS_FLcDNA=J023039P05;Expression=AK072327;TENOR=Os05t0221400-01;KEGG=Os05t0221400-01
Chr05	irgsp1_rep	five_prime_UTR	7460683	7461042	.	-	.	Parent=Os05t0221400-01
Chr05	irgsp1_rep	five_prime_UTR	7458400	7460457	.	-	.	Parent=Os05t0221400-01
Chr05	irgsp1_rep	CDS	7458246	7458399	.	-	0	Parent=Os05t0221400-01
Chr05	irgsp1_rep	CDS	7457998	7458143	.	-	2	Parent=Os05t0221400-01
Chr05	irgsp1_rep	three_prime_UTR	7457248	7457997	.	-	.	Parent=Os05t0221400-01
Chr05	irgsp1_rep	three_prime_UTR	7456672	7456753	.	-	.	Parent=Os05t0221400-01
Chr05	irgsp1_rep	three_prime_UTR	7455582	7456008	.	-	.	Parent=Os05t0221400-01
Chr05	irgsp1_rep	mRNA	7476840	7478765	.	-	.	ID=Os05t0221900-00;Name=Os05t0221900-00;Locus_id=Os05g0221900;Oryzabase Gene Symbol Synonym(s)=OsBURP08%2C OsBURP8;Oryzabase Gene Name Synonym(s)=BURP domain-containing protein 8;Note=Similar to BURP domain-containing protein 8.;Transcript_evidence=AK335949 (DDBJ);ORF_evidence=Q75G46 (UniProt);InterPro=BURP (IPR004873);Oryzabase=15047;TENOR=Os05t0221900-00;KEGG=Os05t0221900-00
Chr05	irgsp1_rep	CDS	7478070	7478765	.	-	0	Parent=Os05t0221900-00
Chr05	irgsp1_rep	CDS	7476894	7477151	.	-	0	Parent=Os05t0221900-00
Chr05	irgsp1_rep	three_prime_UTR	7476840	7476893	.	-	.	Parent=Os05t0221900-00
Chr05	irgsp1_rep	mRNA	7492742	7498318	.	-	.	ID=Os05t0222200-01;Name=Os05t0222200-01;Locus_id=Os05g0222200;CGSNL Gene Symbol=ABCG12;CGSNL Gene Name=ABC TRANSPORTER G FAMILY MEMBER 12;Oryzabase Gene Symbol Synonym(s)=OsABCG12;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 12;Note=ABC transporter-like domain containing protein.;Transcript_evidence=AK068591 (DDBJ%2C Best hit);ORF_evidence=B6SP80 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC-2 type transporter (IPR013525),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=J013154I12;Oryzabase=11989;TENOR=Os05t0222200-01
Chr05	irgsp1_rep	five_prime_UTR	7498028	7498318	.	-	.	Parent=Os05t0222200-01
Chr05	irgsp1_rep	CDS	7497757	7498027	.	-	0	Parent=Os05t0222200-01
Chr05	irgsp1_rep	CDS	7497185	7497264	.	-	2	Parent=Os05t0222200-01
Chr05	irgsp1_rep	CDS	7495036	7495500	.	-	0	Parent=Os05t0222200-01
Chr05	irgsp1_rep	CDS	7494759	7494884	.	-	0	Parent=Os05t0222200-01
Chr05	irgsp1_rep	CDS	7494549	7494674	.	-	0	Parent=Os05t0222200-01
Chr05	irgsp1_rep	CDS	7493885	7494442	.	-	0	Parent=Os05t0222200-01
Chr05	irgsp1_rep	CDS	7493575	7493682	.	-	0	Parent=Os05t0222200-01
Chr05	irgsp1_rep	CDS	7493105	7493473	.	-	0	Parent=Os05t0222200-01
Chr05	irgsp1_rep	three_prime_UTR	7492742	7493104	.	-	.	Parent=Os05t0222200-01
Chr05	irgsp1_rep	mRNA	7492742	7498163	.	-	.	ID=Os05t0222200-02;Name=Os05t0222200-02;Locus_id=Os05g0222200;CGSNL Gene Symbol=ABCG12;CGSNL Gene Name=ABC TRANSPORTER G FAMILY MEMBER 12;Oryzabase Gene Symbol Synonym(s)=OsABCG12;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 12;Note=ABC transporter-like domain containing protein.;Transcript_evidence=AK070374 (DDBJ%2C Best hit);ORF_evidence=B6SP80 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC-2 type transporter (IPR013525),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=J023051G10;Oryzabase=11989;TENOR=Os05t0222200-02
Chr05	irgsp1_rep	five_prime_UTR	7498028	7498163	.	-	.	Parent=Os05t0222200-02
Chr05	irgsp1_rep	CDS	7497757	7498027	.	-	0	Parent=Os05t0222200-02
Chr05	irgsp1_rep	CDS	7497185	7497264	.	-	2	Parent=Os05t0222200-02
Chr05	irgsp1_rep	CDS	7495036	7495500	.	-	0	Parent=Os05t0222200-02
Chr05	irgsp1_rep	CDS	7494759	7494884	.	-	0	Parent=Os05t0222200-02
Chr05	irgsp1_rep	CDS	7494549	7494674	.	-	0	Parent=Os05t0222200-02
Chr05	irgsp1_rep	CDS	7493885	7494442	.	-	0	Parent=Os05t0222200-02
Chr05	irgsp1_rep	CDS	7493575	7493682	.	-	0	Parent=Os05t0222200-02
Chr05	irgsp1_rep	CDS	7493105	7493473	.	-	0	Parent=Os05t0222200-02
Chr05	irgsp1_rep	three_prime_UTR	7492742	7493104	.	-	.	Parent=Os05t0222200-02
Chr05	irgsp1_rep	mRNA	7533744	7534582	.	-	.	ID=Os05t0223000-01;Name=Os05t0223000-01;Locus_id=Os05g0223000;CGSNL Gene Symbol=CML18;CGSNL Gene Name=CALMODULIN-LIKE PROTEIN 18;Oryzabase Gene Symbol Synonym(s)=OsCML18;Oryzabase Gene Name Synonym(s)=calmodulin-like protein 18;Note=Similar to TCH2 (TOUCH 2)%3B calcium ion binding.;Transcript_evidence=AK071661 (DDBJ%2C Best hit);ORF_evidence=NP_198593.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J023105D07;Oryzabase=10504;TENOR=Os05t0223000-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	7534552	7534582	.	-	.	Parent=Os05t0223000-01
Chr05	irgsp1_rep	CDS	7533982	7534551	.	-	0	Parent=Os05t0223000-01
Chr05	irgsp1_rep	three_prime_UTR	7533744	7533981	.	-	.	Parent=Os05t0223000-01
Chr05	irgsp1_rep	mRNA	7537879	7538540	.	-	.	ID=Os05t0223100-00;Name=Os05t0223100-00;Locus_id=Os05g0223100;Note=Hypothetical protein.;Transcript_evidence=AK355471 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0223100-00
Chr05	irgsp1_rep	five_prime_UTR	7538225	7538540	.	-	.	Parent=Os05t0223100-00
Chr05	irgsp1_rep	CDS	7537916	7538224	.	-	0	Parent=Os05t0223100-00
Chr05	irgsp1_rep	three_prime_UTR	7537879	7537915	.	-	.	Parent=Os05t0223100-00
Chr05	irgsp1_rep	mRNA	7552500	7553849	.	+	.	ID=Os05t0223200-01;Name=Os05t0223200-01;Locus_id=Os05g0223200;Note=Similar to Glycine-rich RNA-binding protein GRP2A.;Transcript_evidence=AK106308 (DDBJ%2C Best hit);ORF_evidence=P49311 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=002-101-C12;TENOR=Os05t0223200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	7552500	7552597	.	+	.	Parent=Os05t0223200-01
Chr05	irgsp1_rep	CDS	7552598	7552753	.	+	0	Parent=Os05t0223200-01
Chr05	irgsp1_rep	CDS	7553319	7553477	.	+	0	Parent=Os05t0223200-01
Chr05	irgsp1_rep	three_prime_UTR	7553478	7553849	.	+	.	Parent=Os05t0223200-01
Chr05	irgsp1_rep	mRNA	7558073	7559206	.	+	.	ID=Os05t0223300-01;Name=Os05t0223300-01;Locus_id=Os05g0223300;CGSNL Gene Symbol=GRP5;CGSNL Gene Name=GLYCINE-RICH RNA-BINDING PROTEIN 5;Oryzabase Gene Symbol Synonym(s)=OsGRP5;Oryzabase Gene Name Synonym(s)=glycine-rich RNA-binding protein 5;Note=Similar to RNA-binding protein.;Transcript_evidence=AK069616 (DDBJ%2C Best hit);ORF_evidence=O24106 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023021C02;Oryzabase=8941;Expression=AK069616;TENOR=Os05t0223300-01;KEGG=Os05t0223300-01
Chr05	irgsp1_rep	five_prime_UTR	7558073	7558199	.	+	.	Parent=Os05t0223300-01
Chr05	irgsp1_rep	CDS	7558200	7558340	.	+	0	Parent=Os05t0223300-01
Chr05	irgsp1_rep	CDS	7558677	7558844	.	+	0	Parent=Os05t0223300-01
Chr05	irgsp1_rep	three_prime_UTR	7558845	7559206	.	+	.	Parent=Os05t0223300-01
Chr05	irgsp1_rep	mRNA	7628540	7630705	.	+	.	ID=Os05t0224700-00;Name=Os05t0224700-00;Locus_id=Os05g0224700;Note=Similar to DNA-directed RNA polymerase II 19 kDa polypeptide.;Transcript_evidence=ab initio prediction;ORF_evidence=B4FXC7 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899);InterPro=RNA polymerase Rpb7%2C N-terminal (IPR005576),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);TENOR=Os05t0224700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	7628540	7628634	.	+	0	Parent=Os05t0224700-00
Chr05	irgsp1_rep	CDS	7630168	7630705	.	+	1	Parent=Os05t0224700-00
Chr05	irgsp1_rep	mRNA	7634230	7638319	.	-	.	ID=Os05t0224800-01;Name=Os05t0224800-01;Locus_id=Os05g0224800;Oryzabase Gene Symbol Synonym(s)=OsCMT2%2C CMT2;Oryzabase Gene Name Synonym(s)=Chromomethylase 2;Note=Similar to Cytosine-specific methyltransferase.;Transcript_evidence=AK111685 (DDBJ%2C Best hit);ORF_evidence=B9FJ44 (UniProt);GO=Biological Process: DNA methylation (GO:0006306),Molecular Function: DNA binding (GO:0003677);InterPro=C-5 cytosine methyltransferase (IPR001525),DNA methylase%2C C-5 cytosine-specific%2C active site (IPR018117);NIAS_FLcDNA=J013170M08;Oryzabase=19933;TENOR=Os05t0224800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	7638319	7638319	.	-	.	Parent=Os05t0224800-01
Chr05	irgsp1_rep	CDS	7638223	7638318	.	-	0	Parent=Os05t0224800-01
Chr05	irgsp1_rep	CDS	7638082	7638150	.	-	0	Parent=Os05t0224800-01
Chr05	irgsp1_rep	CDS	7637330	7637416	.	-	0	Parent=Os05t0224800-01
Chr05	irgsp1_rep	CDS	7637171	7637258	.	-	0	Parent=Os05t0224800-01
Chr05	irgsp1_rep	CDS	7636587	7636708	.	-	2	Parent=Os05t0224800-01
Chr05	irgsp1_rep	CDS	7636406	7636510	.	-	0	Parent=Os05t0224800-01
Chr05	irgsp1_rep	CDS	7636253	7636296	.	-	0	Parent=Os05t0224800-01
Chr05	irgsp1_rep	CDS	7636088	7636157	.	-	1	Parent=Os05t0224800-01
Chr05	irgsp1_rep	CDS	7635910	7636013	.	-	0	Parent=Os05t0224800-01
Chr05	irgsp1_rep	CDS	7634691	7634844	.	-	1	Parent=Os05t0224800-01
Chr05	irgsp1_rep	three_prime_UTR	7634230	7634690	.	-	.	Parent=Os05t0224800-01
Chr05	irgsp1_rep	mRNA	7645986	7648191	.	-	.	ID=Os05t0224900-01;Name=Os05t0224900-01;Locus_id=Os05g0224900;CGSNL Gene Symbol=CMT3;CGSNL Gene Name=CHROMOMETHYLTRANSFERASE 3;Oryzabase Gene Symbol Synonym(s)=OsCMT3%2C CMT3-1%2C OsCMT2%2C CMT2;Oryzabase Gene Name Synonym(s)=Chromomethyltransferase 3%2C Chromomethylase 2;Note=Similar to Cytosine-specific methyltransferase.;Transcript_evidence=AK109728 (DDBJ%2C Best hit);ORF_evidence=B8AZD1 (UniProt);NIAS_FLcDNA=002-146-B10;Oryzabase=10402,19933;TENOR=Os05t0224900-01;KEGG=Os05t0224900-01
Chr05	irgsp1_rep	five_prime_UTR	7648126	7648191	.	-	.	Parent=Os05t0224900-01
Chr05	irgsp1_rep	CDS	7646401	7648125	.	-	0	Parent=Os05t0224900-01
Chr05	irgsp1_rep	three_prime_UTR	7645986	7646400	.	-	.	Parent=Os05t0224900-01
Chr05	irgsp1_rep	mRNA	7672593	7673255	.	+	.	ID=Os05t0225500-01;Name=Os05t0225500-01;Locus_id=Os05g0225500;Note=Hypothetical protein.;Transcript_evidence=AK107919 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-134-H02;Expression=AK107919;TENOR=Os05t0225500-01;KEGG=Os05t0225500-01
Chr05	irgsp1_rep	five_prime_UTR	7672593	7672685	.	+	.	Parent=Os05t0225500-01
Chr05	irgsp1_rep	CDS	7672686	7673015	.	+	0	Parent=Os05t0225500-01
Chr05	irgsp1_rep	three_prime_UTR	7673016	7673255	.	+	.	Parent=Os05t0225500-01
Chr05	irgsp1_rep	mRNA	7685383	7686514	.	-	.	ID=Os05t0225800-01;Name=Os05t0225800-01;Locus_id=Os05g0225800;Note=Similar to Szp protein.;Transcript_evidence=AK070646 (DDBJ%2C Best hit);ORF_evidence=A2Y1R8 (UniProt);NIAS_FLcDNA=J023063L01;Expression=AK070646;TENOR=Os05t0225800-01;KEGG=Os05t0225800-01
Chr05	irgsp1_rep	five_prime_UTR	7686393	7686514	.	-	.	Parent=Os05t0225800-01
Chr05	irgsp1_rep	CDS	7685631	7686392	.	-	0	Parent=Os05t0225800-01
Chr05	irgsp1_rep	three_prime_UTR	7685383	7685630	.	-	.	Parent=Os05t0225800-01
Chr05	irgsp1_rep	mRNA	7692541	7693302	.	-	.	ID=Os05t0226000-00;Name=Os05t0226000-00;Locus_id=Os05g0226000;Note=Similar to Proline-rich protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A7KH49 (UniProt);TENOR=Os05t0226000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	7692541	7693302	.	-	0	Parent=Os05t0226000-00
Chr05	irgsp1_rep	mRNA	7704963	7707764	.	+	.	ID=Os05t0226300-01;Name=Os05t0226300-01;Locus_id=Os05g0226300;Note=Similar to FIP1.;Transcript_evidence=AK067770 (DDBJ%2C Best hit);ORF_evidence=B6SNS7 (UniProt);NIAS_FLcDNA=J013120H22;TENOR=Os05t0226300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	7704963	7705378	.	+	0	Parent=Os05t0226300-01
Chr05	irgsp1_rep	CDS	7705467	7705641	.	+	1	Parent=Os05t0226300-01
Chr05	irgsp1_rep	three_prime_UTR	7705642	7705809	.	+	.	Parent=Os05t0226300-01
Chr05	irgsp1_rep	three_prime_UTR	7705934	7706253	.	+	.	Parent=Os05t0226300-01
Chr05	irgsp1_rep	three_prime_UTR	7706351	7706490	.	+	.	Parent=Os05t0226300-01
Chr05	irgsp1_rep	three_prime_UTR	7706595	7707764	.	+	.	Parent=Os05t0226300-01
Chr05	irgsp1_rep	mRNA	7721638	7723146	.	-	.	ID=Os05t0226900-01;Name=Os05t0226900-01;Locus_id=Os05g0226900;RAP-DB Gene Symbol Synonym(s)=OsRePRP1.1%2C OsPRP;RAP-DB Gene Name Synonym(s)=REPETITIVE PROLINE-RICH PROTEIN 1.1%2C proline rich protein;Oryzabase Gene Symbol Synonym(s)=OsPRP%2C OsPRP1%2C PRP1%2C OsRePRP1.1%2C RePRP1.1;Oryzabase Gene Name Synonym(s)=proline rich protein%2C repetitive proline rich protein%2C REPETITIVE PROLINE-RICH PROTEIN 1.1;Note=Proline-rich glycoprotein%2C ABA-dependent inhibition of root growth;Transcript_evidence=AK100217;ORF_evidence=Q6AVC2;NIAS_FLcDNA=J023045I16;Manual Curation=May 20%2C 2014;Literature_PMID=23886623;Oryzabase=14382;TENOR=Os05t0226900-01;KEGG=Os05t0226900-01
Chr05	irgsp1_rep	five_prime_UTR	7723060	7723146	.	-	.	Parent=Os05t0226900-01
Chr05	irgsp1_rep	CDS	7721977	7723059	.	-	0	Parent=Os05t0226900-01
Chr05	irgsp1_rep	three_prime_UTR	7721638	7721976	.	-	.	Parent=Os05t0226900-01
Chr05	irgsp1_rep	mRNA	7731803	7732436	.	+	.	ID=Os05t0227100-01;Name=Os05t0227100-01;Locus_id=Os05g0227100;Note=Conserved hypothetical protein.;Transcript_evidence=AK241916 (DDBJ%2C Best hit);ORF_evidence=B9FN70 (UniProt);NIAS_FLcDNA=J075072D22;TENOR=Os05t0227100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	7731803	7731803	.	+	.	Parent=Os05t0227100-01
Chr05	irgsp1_rep	CDS	7731804	7732127	.	+	0	Parent=Os05t0227100-01
Chr05	irgsp1_rep	three_prime_UTR	7732128	7732436	.	+	.	Parent=Os05t0227100-01
Chr05	irgsp1_rep	mRNA	7746542	7748227	.	-	.	ID=Os05t0227600-01;Name=Os05t0227600-01;Locus_id=Os05g0227600;RAP-DB Gene Symbol Synonym(s)=OsRePRP1.2;RAP-DB Gene Name Synonym(s)=REPETITIVE PROLINE-RICH PROTEIN 1.2;Oryzabase Gene Symbol Synonym(s)=OsRePRP1.2%2C RePRP1.2;Oryzabase Gene Name Synonym(s)=REPETITIVE PROLINE-RICH PROTEIN 1.2;Note=Proline-rich glycoprotein%2C ABA-dependent inhibition of root growth;Transcript_evidence=AY224438;ORF_evidence=Q84PC5;Manual Curation=May 20%2C 2014;Literature_PMID=23886623;Oryzabase=20515;TENOR=Os05t0227600-00
Chr05	irgsp1_rep	five_prime_UTR	7748140	7748227	.	-	.	Parent=Os05t0227600-01
Chr05	irgsp1_rep	CDS	7746889	7748139	.	-	0	Parent=Os05t0227600-01
Chr05	irgsp1_rep	three_prime_UTR	7746542	7746888	.	-	.	Parent=Os05t0227600-01
Chr05	irgsp1_rep	mRNA	7762146	7768316	.	-	.	ID=Os05t0227700-01;Name=Os05t0227700-01;Locus_id=Os05g0227700;CGSNL Gene Symbol=EIF3L;CGSNL Gene Name=EUKARYOTIC INITIATION FACTOR 3L;Oryzabase Gene Symbol Synonym(s)=eIF-3l%2C OseIF3l;Oryzabase Gene Name Synonym(s)="eukaryotic translation initiation factor 3%2C subunit l";Note=Similar to Eukaryotic translation initiation factor 3 subunit 6-interacting protein.;Transcript_evidence=AK067567 (DDBJ%2C Best hit);ORF_evidence=B6SYA1 (UniProt);InterPro=Translation initiation factor 3 complex%2C subunit L (IPR019382);NIAS_FLcDNA=J013108C14;Oryzabase=21030;Expression=AK067567;TENOR=Os05t0227700-01;KEGG=Os05t0227700-01
Chr05	irgsp1_rep	five_prime_UTR	7768270	7768316	.	-	.	Parent=Os05t0227700-01
Chr05	irgsp1_rep	CDS	7767712	7768269	.	-	0	Parent=Os05t0227700-01
Chr05	irgsp1_rep	CDS	7766781	7767112	.	-	0	Parent=Os05t0227700-01
Chr05	irgsp1_rep	CDS	7764889	7765228	.	-	1	Parent=Os05t0227700-01
Chr05	irgsp1_rep	CDS	7763897	7764045	.	-	0	Parent=Os05t0227700-01
Chr05	irgsp1_rep	CDS	7763720	7763813	.	-	1	Parent=Os05t0227700-01
Chr05	irgsp1_rep	CDS	7762633	7762704	.	-	0	Parent=Os05t0227700-01
Chr05	irgsp1_rep	CDS	7762458	7762502	.	-	0	Parent=Os05t0227700-01
Chr05	irgsp1_rep	three_prime_UTR	7762146	7762457	.	-	.	Parent=Os05t0227700-01
Chr05	irgsp1_rep	mRNA	7762104	7768271	.	-	.	ID=Os05t0227700-02;Name=Os05t0227700-02;Locus_id=Os05g0227700;CGSNL Gene Symbol=EIF3L;CGSNL Gene Name=EUKARYOTIC INITIATION FACTOR 3L;Oryzabase Gene Symbol Synonym(s)=eIF-3l%2C OseIF3l;Oryzabase Gene Name Synonym(s)="eukaryotic translation initiation factor 3%2C subunit l";Note=Similar to Eukaryotic translation initiation factor 3 subunit 6-interacting protein.;Transcript_evidence=AK068760 (DDBJ%2C Best hit);ORF_evidence=B6SYA1 (UniProt);InterPro=Translation initiation factor 3 complex%2C subunit L (IPR019382);NIAS_FLcDNA=J013160I02;Oryzabase=21030;Expression=AK068760;TENOR=Os05t0227700-02;KEGG=Os05t0227700-02
Chr05	irgsp1_rep	five_prime_UTR	7768270	7768271	.	-	.	Parent=Os05t0227700-02
Chr05	irgsp1_rep	CDS	7767712	7768269	.	-	0	Parent=Os05t0227700-02
Chr05	irgsp1_rep	CDS	7766781	7767112	.	-	0	Parent=Os05t0227700-02
Chr05	irgsp1_rep	CDS	7764889	7765228	.	-	1	Parent=Os05t0227700-02
Chr05	irgsp1_rep	CDS	7763897	7764045	.	-	0	Parent=Os05t0227700-02
Chr05	irgsp1_rep	CDS	7763720	7763813	.	-	1	Parent=Os05t0227700-02
Chr05	irgsp1_rep	CDS	7762633	7762704	.	-	0	Parent=Os05t0227700-02
Chr05	irgsp1_rep	CDS	7762458	7762502	.	-	0	Parent=Os05t0227700-02
Chr05	irgsp1_rep	three_prime_UTR	7762104	7762457	.	-	.	Parent=Os05t0227700-02
Chr05	irgsp1_rep	mRNA	7762241	7767105	.	-	.	ID=Os05t0227700-03;Name=Os05t0227700-03;Locus_id=Os05g0227700;CGSNL Gene Symbol=EIF3L;CGSNL Gene Name=EUKARYOTIC INITIATION FACTOR 3L;Oryzabase Gene Symbol Synonym(s)=eIF-3l%2C OseIF3l;Oryzabase Gene Name Synonym(s)="eukaryotic translation initiation factor 3%2C subunit l";Note=Similar to Eukaryotic translation initiation factor 3 subunit 6-interacting protein.;Transcript_evidence=AK104688 (DDBJ%2C Best hit);ORF_evidence=B6SYA1 (UniProt);InterPro=Translation initiation factor 3 complex%2C subunit L (IPR019382);NIAS_FLcDNA=001-036-F08;Oryzabase=21030;Expression=AK104688;TENOR=Os05t0227700-03;KEGG=Os05t0227700-03
Chr05	irgsp1_rep	five_prime_UTR	7767104	7767105	.	-	.	Parent=Os05t0227700-03
Chr05	irgsp1_rep	CDS	7766781	7767103	.	-	0	Parent=Os05t0227700-03
Chr05	irgsp1_rep	CDS	7764889	7765228	.	-	1	Parent=Os05t0227700-03
Chr05	irgsp1_rep	CDS	7763897	7764045	.	-	0	Parent=Os05t0227700-03
Chr05	irgsp1_rep	CDS	7763720	7763813	.	-	1	Parent=Os05t0227700-03
Chr05	irgsp1_rep	CDS	7762633	7762704	.	-	0	Parent=Os05t0227700-03
Chr05	irgsp1_rep	CDS	7762458	7762502	.	-	0	Parent=Os05t0227700-03
Chr05	irgsp1_rep	three_prime_UTR	7762241	7762457	.	-	.	Parent=Os05t0227700-03
Chr05	irgsp1_rep	mRNA	7768465	7770413	.	+	.	ID=Os05t0227800-01;Name=Os05t0227800-01;Locus_id=Os05g0227800;Note=Homeodomain-like containing protein.;Transcript_evidence=AK110997 (DDBJ%2C Best hit);ORF_evidence=B9FJ50 (UniProt);NIAS_FLcDNA=002-174-E07;Expression=AK110997;TENOR=Os05t0227800-01;KEGG=Os05t0227800-01
Chr05	irgsp1_rep	five_prime_UTR	7768465	7768736	.	+	.	Parent=Os05t0227800-01
Chr05	irgsp1_rep	five_prime_UTR	7768911	7768980	.	+	.	Parent=Os05t0227800-01
Chr05	irgsp1_rep	five_prime_UTR	7769100	7769104	.	+	.	Parent=Os05t0227800-01
Chr05	irgsp1_rep	CDS	7769105	7769527	.	+	0	Parent=Os05t0227800-01
Chr05	irgsp1_rep	CDS	7769610	7770320	.	+	0	Parent=Os05t0227800-01
Chr05	irgsp1_rep	three_prime_UTR	7770321	7770413	.	+	.	Parent=Os05t0227800-01
Chr05	irgsp1_rep	mRNA	7775186	7779317	.	+	.	ID=Os05t0227901-01;Name=Os05t0227901-01;Locus_id=Os05g0227901;Note=Hypothetical gene.;Transcript_evidence=AK288706 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090061L24;TENOR=Os05t0227901-01;KEGG=Os05t0227901-01
Chr05	irgsp1_rep	five_prime_UTR	7775186	7775623	.	+	.	Parent=Os05t0227901-01
Chr05	irgsp1_rep	CDS	7775624	7775992	.	+	0	Parent=Os05t0227901-01
Chr05	irgsp1_rep	three_prime_UTR	7775993	7779317	.	+	.	Parent=Os05t0227901-01
Chr05	irgsp1_rep	mRNA	7775450	7780974	.	-	.	ID=Os05t0228000-01;Name=Os05t0228000-01;Locus_id=Os05g0228000;Note=Purine and other phosphorylases%2C family 1 protein.;Transcript_evidence=AK064229 (DDBJ%2C Best hit);ORF_evidence=B6T4U2 (UniProt);GO=Biological Process: nucleoside metabolic process (GO:0009116),Molecular Function: catalytic activity (GO:0003824);InterPro=Nucleoside phosphorylase domain (IPR000845),Nucleoside phosphorylase (IPR018017);NIAS_FLcDNA=002-104-H04;TENOR=Os05t0228000-01
Chr05	irgsp1_rep	five_prime_UTR	7780748	7780974	.	-	.	Parent=Os05t0228000-01
Chr05	irgsp1_rep	CDS	7780492	7780747	.	-	0	Parent=Os05t0228000-01
Chr05	irgsp1_rep	CDS	7776808	7776875	.	-	2	Parent=Os05t0228000-01
Chr05	irgsp1_rep	CDS	7776310	7776465	.	-	0	Parent=Os05t0228000-01
Chr05	irgsp1_rep	CDS	7775608	7776210	.	-	0	Parent=Os05t0228000-01
Chr05	irgsp1_rep	three_prime_UTR	7775450	7775607	.	-	.	Parent=Os05t0228000-01
Chr05	irgsp1_rep	mRNA	7775450	7780892	.	-	.	ID=Os05t0228000-02;Name=Os05t0228000-02;Locus_id=Os05g0228000;Note=Purine and other phosphorylases%2C family 1 protein.;Transcript_evidence=AK101642 (DDBJ%2C Best hit);ORF_evidence=B6T4U2 (UniProt);GO=Biological Process: nucleoside metabolic process (GO:0009116),Molecular Function: catalytic activity (GO:0003824);InterPro=Nucleoside phosphorylase domain (IPR000845),Nucleoside phosphorylase (IPR018017);NIAS_FLcDNA=J033055L05;TENOR=Os05t0228000-02
Chr05	irgsp1_rep	five_prime_UTR	7780748	7780892	.	-	.	Parent=Os05t0228000-02
Chr05	irgsp1_rep	CDS	7780492	7780747	.	-	0	Parent=Os05t0228000-02
Chr05	irgsp1_rep	CDS	7776808	7776875	.	-	2	Parent=Os05t0228000-02
Chr05	irgsp1_rep	CDS	7776310	7776465	.	-	0	Parent=Os05t0228000-02
Chr05	irgsp1_rep	CDS	7775608	7776210	.	-	0	Parent=Os05t0228000-02
Chr05	irgsp1_rep	three_prime_UTR	7775450	7775607	.	-	.	Parent=Os05t0228000-02
Chr05	irgsp1_rep	mRNA	7802746	7810387	.	-	.	ID=Os05t0228400-01;Name=Os05t0228400-01;Locus_id=Os05g0228400;RAP-DB Gene Symbol Synonym(s)=OsbHLH073;RAP-DB Gene Name Synonym(s)=basic helix-loop-helix protein 073;Oryzabase Gene Symbol Synonym(s)=OsbHLH073;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 073;Note=Atypical basic helix-loop-helix transcription factor%2C "Regulation of plant height%2C internode elongation%2C and panicle exsertion"%2C Regulation of GA biosynthesis;Transcript_evidence=AK100786;ORF_evidence=A0A0N7KKD4;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Helix-loop-helix DNA-binding domain superfamily (IPR036638),Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);NIAS_FLcDNA=J023120O21;Manual Curation=April 30%2C 2020;Literature_PMID=32340222;Oryzabase=15360;Expression=AK100786;TENOR=Os05t0228400-01;KEGG=Os05t0228400-01;Subcellular location=nucleus (GO:0005634)
Chr05	irgsp1_rep	five_prime_UTR	7810085	7810387	.	-	.	Parent=Os05t0228400-01
Chr05	irgsp1_rep	CDS	7809753	7810084	.	-	0	Parent=Os05t0228400-01
Chr05	irgsp1_rep	CDS	7808932	7809334	.	-	1	Parent=Os05t0228400-01
Chr05	irgsp1_rep	CDS	7807916	7807993	.	-	0	Parent=Os05t0228400-01
Chr05	irgsp1_rep	CDS	7807624	7807689	.	-	0	Parent=Os05t0228400-01
Chr05	irgsp1_rep	CDS	7807205	7807270	.	-	0	Parent=Os05t0228400-01
Chr05	irgsp1_rep	CDS	7805719	7805772	.	-	0	Parent=Os05t0228400-01
Chr05	irgsp1_rep	CDS	7803926	7803976	.	-	0	Parent=Os05t0228400-01
Chr05	irgsp1_rep	CDS	7803725	7803784	.	-	0	Parent=Os05t0228400-01
Chr05	irgsp1_rep	CDS	7803304	7803441	.	-	0	Parent=Os05t0228400-01
Chr05	irgsp1_rep	three_prime_UTR	7802746	7803303	.	-	.	Parent=Os05t0228400-01
Chr05	irgsp1_rep	mRNA	7802686	7809250	.	-	.	ID=Os05t0228400-02;Name=Os05t0228400-02;Locus_id=Os05g0228400;Oryzabase Gene Symbol Synonym(s)=OsbHLH073%2C OsbHLH73%2C bHLH073;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 073;Note=Basic helix-loop-helix dimerisation region bHLH domain containing protein.;Transcript_evidence=AK121917 (DDBJ%2C Best hit);ORF_evidence=A7UQT2 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J033106C20;Oryzabase=15360;Expression=AK121917;TENOR=Os05t0228400-02;KEGG=Os05t0228400-02
Chr05	irgsp1_rep	five_prime_UTR	7809226	7809250	.	-	.	Parent=Os05t0228400-02
Chr05	irgsp1_rep	CDS	7808932	7809225	.	-	0	Parent=Os05t0228400-02
Chr05	irgsp1_rep	CDS	7807916	7807993	.	-	0	Parent=Os05t0228400-02
Chr05	irgsp1_rep	CDS	7807624	7807689	.	-	0	Parent=Os05t0228400-02
Chr05	irgsp1_rep	CDS	7807205	7807270	.	-	0	Parent=Os05t0228400-02
Chr05	irgsp1_rep	CDS	7805719	7805772	.	-	0	Parent=Os05t0228400-02
Chr05	irgsp1_rep	CDS	7803926	7803976	.	-	0	Parent=Os05t0228400-02
Chr05	irgsp1_rep	CDS	7803725	7803784	.	-	0	Parent=Os05t0228400-02
Chr05	irgsp1_rep	CDS	7803304	7803441	.	-	0	Parent=Os05t0228400-02
Chr05	irgsp1_rep	three_prime_UTR	7802686	7803303	.	-	.	Parent=Os05t0228400-02
Chr05	irgsp1_rep	mRNA	7845334	7846279	.	-	.	ID=Os05t0228900-01;Name=Os05t0228900-01;Locus_id=Os05g0228900;Note=Hypothetical protein.;Transcript_evidence=AK108667 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-148-G06;Expression=AK108667;TENOR=Os05t0228900-01;KEGG=Os05t0228900-01
Chr05	irgsp1_rep	five_prime_UTR	7845948	7846279	.	-	.	Parent=Os05t0228900-01
Chr05	irgsp1_rep	CDS	7845444	7845947	.	-	0	Parent=Os05t0228900-01
Chr05	irgsp1_rep	three_prime_UTR	7845334	7845443	.	-	.	Parent=Os05t0228900-01
Chr05	irgsp1_rep	mRNA	7848218	7848915	.	-	.	ID=Os05t0229000-00;Name=Os05t0229000-00;Locus_id=Os05g0229000;Note=Non-protein coding transcript.;Transcript_evidence=CT836449 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os05t0229000-00
Chr05	irgsp1_rep	exon	7848218	7848915	.	-	.	Parent=Os05t0229000-00
Chr05	irgsp1_rep	mRNA	7849847	7850262	.	-	.	ID=Os05t0229475-00;Name=Os05t0229475-00;Locus_id=Os05g0229475;Note=Similar to OSIGBa0112G01.4 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01MP9 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676);InterPro=D111/G-patch (IPR000467);TENOR=Os05t0229475-00
Chr05	irgsp1_rep	CDS	7850118	7850262	.	-	0	Parent=Os05t0229475-00
Chr05	irgsp1_rep	CDS	7849847	7849914	.	-	2	Parent=Os05t0229475-00
Chr05	irgsp1_rep	mRNA	7893815	7893993	.	-	.	ID=Os05t0229950-00;Name=Os05t0229950-00;Locus_id=Os05g0229950;Note=Non-protein coding transcript.;Transcript_evidence=EU947976 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0229950-00
Chr05	irgsp1_rep	exon	7893815	7893993	.	-	.	Parent=Os05t0229950-00
Chr05	irgsp1_rep	mRNA	7919918	7920156	.	-	.	ID=Os05t0230501-01;Name=Os05t0230501-01;Locus_id=Os05g0230501;Note=Hypothetical conserved gene.;Transcript_evidence=AK242689 (DDBJ%2C Best hit);ORF_evidence=NP_001174283.1 (RefSeq);NIAS_FLcDNA=J090034F18;TENOR=Os05t0230501-01;KEGG=Os05t0230501-01
Chr05	irgsp1_rep	five_prime_UTR	7920155	7920156	.	-	.	Parent=Os05t0230501-01
Chr05	irgsp1_rep	CDS	7919924	7920154	.	-	0	Parent=Os05t0230501-01
Chr05	irgsp1_rep	three_prime_UTR	7919918	7919923	.	-	.	Parent=Os05t0230501-01
Chr05	irgsp1_rep	mRNA	7927113	7936391	.	+	.	ID=Os05t0230600-01;Name=Os05t0230600-01;Locus_id=Os05g0230600;RAP-DB Gene Symbol Synonym(s)=RFC3;RAP-DB Gene Name Synonym(s)=RFC subunit 3%2C restoration of fertility complex subunit 3;Oryzabase Gene Symbol Synonym(s)=RFC3;Oryzabase Gene Name Synonym(s)=RFC subunit 3%2C restoration of fertility complex subunit 3;Note=DUF1620-containing and WD40-like repeat protein%2C Scaffold protein for assembly of the restoration of fertility complex;Transcript_evidence=AK070398;ORF_evidence=Q75GB3;GO=Molecular Function: protein binding (GO:0005515),Cellular Component: ER membrane protein complex (GO:0072546);InterPro=ER membrane protein complex subunit 1 (IPR026895),Quinoprotein alcohol dehydrogenase-like superfamily (IPR011047),WD40/YVTN repeat-like-containing domain (IPR015943),ER membrane protein complex subunit 1%2C C-terminal (IPR011678),Pyrrolo-quinoline quinone repeat (IPR002372);NIAS_FLcDNA=J023048G06;Manual Curation=June 15%2C 2017;Literature_PMID=26781807;Oryzabase=21034;Expression=AK070398;TENOR=Os05t0230600-01;KEGG=Os05t0230600-01;Subcellular location=mitochondrion (GO:0005739)
Chr05	irgsp1_rep	five_prime_UTR	7927113	7927209	.	+	.	Parent=Os05t0230600-01
Chr05	irgsp1_rep	CDS	7927210	7927325	.	+	0	Parent=Os05t0230600-01
Chr05	irgsp1_rep	CDS	7929376	7929503	.	+	1	Parent=Os05t0230600-01
Chr05	irgsp1_rep	CDS	7929607	7929669	.	+	2	Parent=Os05t0230600-01
Chr05	irgsp1_rep	CDS	7930687	7930808	.	+	2	Parent=Os05t0230600-01
Chr05	irgsp1_rep	CDS	7930921	7931036	.	+	0	Parent=Os05t0230600-01
Chr05	irgsp1_rep	CDS	7931124	7931931	.	+	1	Parent=Os05t0230600-01
Chr05	irgsp1_rep	CDS	7932164	7932892	.	+	0	Parent=Os05t0230600-01
Chr05	irgsp1_rep	CDS	7933002	7933223	.	+	0	Parent=Os05t0230600-01
Chr05	irgsp1_rep	CDS	7933453	7933548	.	+	0	Parent=Os05t0230600-01
Chr05	irgsp1_rep	CDS	7933637	7933831	.	+	0	Parent=Os05t0230600-01
Chr05	irgsp1_rep	CDS	7934667	7934780	.	+	0	Parent=Os05t0230600-01
Chr05	irgsp1_rep	CDS	7935759	7936019	.	+	0	Parent=Os05t0230600-01
Chr05	irgsp1_rep	three_prime_UTR	7936020	7936391	.	+	.	Parent=Os05t0230600-01
Chr05	irgsp1_rep	mRNA	7931344	7936386	.	+	.	ID=Os05t0230600-02;Name=Os05t0230600-02;Locus_id=Os05g0230600;Oryzabase Gene Symbol Synonym(s)=RFC3;Oryzabase Gene Name Synonym(s)=RFC subunit 3%2C restoration of fertility complex subunit 3;Note=Similar to predicted protein.;Transcript_evidence=AK065765 (DDBJ%2C Best hit);ORF_evidence=NP_196717.3 (RefSeq);InterPro=Domain of unknown function DUF1620 (IPR011678);NIAS_FLcDNA=J013040F09;Oryzabase=21034;Expression=AK065765;TENOR=Os05t0230600-02;KEGG=Os05t0230600-02
Chr05	irgsp1_rep	CDS	7931344	7931931	.	+	0	Parent=Os05t0230600-02
Chr05	irgsp1_rep	CDS	7932164	7932892	.	+	0	Parent=Os05t0230600-02
Chr05	irgsp1_rep	CDS	7933002	7933223	.	+	0	Parent=Os05t0230600-02
Chr05	irgsp1_rep	CDS	7933453	7933548	.	+	0	Parent=Os05t0230600-02
Chr05	irgsp1_rep	CDS	7933637	7933831	.	+	0	Parent=Os05t0230600-02
Chr05	irgsp1_rep	CDS	7934667	7934780	.	+	0	Parent=Os05t0230600-02
Chr05	irgsp1_rep	CDS	7935759	7936019	.	+	0	Parent=Os05t0230600-02
Chr05	irgsp1_rep	three_prime_UTR	7936020	7936386	.	+	.	Parent=Os05t0230600-02
Chr05	irgsp1_rep	mRNA	7950915	7954374	.	+	.	ID=Os05t0230700-01;Name=Os05t0230700-01;Locus_id=Os05g0230700;CGSNL Gene Symbol=IAA17;Oryzabase Gene Symbol Synonym(s)=OsIAA17;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 17;Note=Similar to Auxin-responsive protein IAA17.;Transcript_evidence=AK106192 (DDBJ%2C Best hit),AK105936 (DDBJ%2C Best hit);ORF_evidence=Q75GB1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Aux/IAA-ARF-dimerisation (IPR011525);NIAS_FLcDNA=001-208-E03,001-205-B07;Oryzabase=10906;TENOR=Os05t0230700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	7950915	7951019	.	+	.	Parent=Os05t0230700-01
Chr05	irgsp1_rep	CDS	7951020	7951360	.	+	0	Parent=Os05t0230700-01
Chr05	irgsp1_rep	CDS	7952068	7952300	.	+	1	Parent=Os05t0230700-01
Chr05	irgsp1_rep	CDS	7953040	7953139	.	+	2	Parent=Os05t0230700-01
Chr05	irgsp1_rep	CDS	7953252	7953313	.	+	1	Parent=Os05t0230700-01
Chr05	irgsp1_rep	CDS	7953967	7954004	.	+	2	Parent=Os05t0230700-01
Chr05	irgsp1_rep	three_prime_UTR	7954005	7954374	.	+	.	Parent=Os05t0230700-01
Chr05	irgsp1_rep	mRNA	7950946	7954304	.	+	.	ID=Os05t0230700-02;Name=Os05t0230700-02;Locus_id=Os05g0230700;CGSNL Gene Symbol=IAA17;Oryzabase Gene Symbol Synonym(s)=OsIAA17;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 17;Note=Similar to Auxin-responsive protein IAA17.;Transcript_evidence=AK102762 (DDBJ%2C Best hit);ORF_evidence=Q75GB1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Aux/IAA-ARF-dimerisation (IPR011525);NIAS_FLcDNA=J033107D08;Oryzabase=10906;Expression=AK102762;TENOR=Os05t0230700-02;KEGG=Os05t0230700-02
Chr05	irgsp1_rep	five_prime_UTR	7950946	7951019	.	+	.	Parent=Os05t0230700-02
Chr05	irgsp1_rep	CDS	7951020	7951360	.	+	0	Parent=Os05t0230700-02
Chr05	irgsp1_rep	CDS	7952068	7952300	.	+	1	Parent=Os05t0230700-02
Chr05	irgsp1_rep	CDS	7953040	7953139	.	+	2	Parent=Os05t0230700-02
Chr05	irgsp1_rep	CDS	7953252	7953313	.	+	1	Parent=Os05t0230700-02
Chr05	irgsp1_rep	CDS	7953967	7954004	.	+	2	Parent=Os05t0230700-02
Chr05	irgsp1_rep	three_prime_UTR	7954005	7954304	.	+	.	Parent=Os05t0230700-02
Chr05	irgsp1_rep	mRNA	7952301	7954372	.	+	.	ID=Os05t0230700-03;Name=Os05t0230700-03;Locus_id=Os05g0230700;CGSNL Gene Symbol=IAA17;Oryzabase Gene Symbol Synonym(s)=OsIAA17;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 17;Note=Similar to Auxin-responsive protein IAA17.;Transcript_evidence=AK069902 (DDBJ%2C Best hit);ORF_evidence=B7ETK8 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Aux/IAA-ARF-dimerisation (IPR011525);NIAS_FLcDNA=J023034K17;Oryzabase=10906;Expression=AK069902;TENOR=Os05t0230700-03;KEGG=Os05t0230700-03
Chr05	irgsp1_rep	five_prime_UTR	7952301	7953017	.	+	.	Parent=Os05t0230700-03
Chr05	irgsp1_rep	CDS	7953018	7953139	.	+	0	Parent=Os05t0230700-03
Chr05	irgsp1_rep	CDS	7953252	7953313	.	+	1	Parent=Os05t0230700-03
Chr05	irgsp1_rep	CDS	7953967	7954004	.	+	2	Parent=Os05t0230700-03
Chr05	irgsp1_rep	three_prime_UTR	7954005	7954372	.	+	.	Parent=Os05t0230700-03
Chr05	irgsp1_rep	mRNA	7960352	7966794	.	-	.	ID=Os05t0230900-01;Name=Os05t0230900-01;Locus_id=Os05g0230900;RAP-DB Gene Symbol Synonym(s)=FLO15%2C OsGLYI7;RAP-DB Gene Name Synonym(s)=FLOURY ENDOSPERM15%2C glyoxalase I-7;CGSNL Gene Symbol=GLYI7;CGSNL Gene Name=GLYOXALASE I-7;Oryzabase Gene Symbol Synonym(s)=OsGLYI7%2C OsGLYI7.1%2C OsGLYI7.2;Oryzabase Gene Name Synonym(s)=glyoxalase I-7;Note=Glyoxalase I%2C Compound starch granule formation and starch synthesis in rice endosperm;Transcript_evidence=AK067996 (truncated),Inferred from literature;ORF_evidence=A0A0E0PJ95 (Oryza rufipogon);GO=Molecular Function: lactoylglutathione lyase activity (GO:0004462),Molecular Function: metal ion binding (GO:0046872);InterPro=Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (IPR029068),Glyoxalase I (IPR004361),Vicinal oxygen chelate (VOC) domain (IPR037523),Glyoxalase/fosfomycin resistance/dioxygenase domain (IPR004360),Glyoxalase I%2C conserved site (IPR018146);NIAS_FLcDNA=J013127D21 (truncated);Manual Curation=January 24%2C 2019;Literature_PMID=30649573;Oryzabase=9357;Expression=AK067996;TENOR=Os05t0230900-01;KEGG=Os05t0230900-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=chloroplast (GO:0009507)
Chr05	irgsp1_rep	five_prime_UTR	7966713	7966794	.	-	.	Parent=Os05t0230900-01
Chr05	irgsp1_rep	CDS	7966634	7966712	.	-	0	Parent=Os05t0230900-01
Chr05	irgsp1_rep	CDS	7966300	7966528	.	-	2	Parent=Os05t0230900-01
Chr05	irgsp1_rep	CDS	7965875	7965999	.	-	1	Parent=Os05t0230900-01
Chr05	irgsp1_rep	CDS	7965706	7965770	.	-	2	Parent=Os05t0230900-01
Chr05	irgsp1_rep	CDS	7964705	7964917	.	-	0	Parent=Os05t0230900-01
Chr05	irgsp1_rep	CDS	7964569	7964616	.	-	0	Parent=Os05t0230900-01
Chr05	irgsp1_rep	CDS	7961982	7962089	.	-	0	Parent=Os05t0230900-01
Chr05	irgsp1_rep	CDS	7961586	7961726	.	-	0	Parent=Os05t0230900-01
Chr05	irgsp1_rep	CDS	7960723	7960767	.	-	0	Parent=Os05t0230900-01
Chr05	irgsp1_rep	three_prime_UTR	7960352	7960722	.	-	.	Parent=Os05t0230900-01
Chr05	irgsp1_rep	mRNA	7973020	7975758	.	-	.	ID=Os05t0231100-00;Name=Os05t0231100-00;Locus_id=Os05g0231100;Note=Hypothetical conserved gene.;Transcript_evidence=CT836418 (DDBJ%2C Best hit);ORF_evidence=B9FJA9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os05t0231100-00;KEGG=Os05t0231100-00 (EC:2.7.11.1)
Chr05	irgsp1_rep	five_prime_UTR	7975612	7975758	.	-	.	Parent=Os05t0231100-00
Chr05	irgsp1_rep	five_prime_UTR	7974560	7974626	.	-	.	Parent=Os05t0231100-00
Chr05	irgsp1_rep	CDS	7974552	7974559	.	-	0	Parent=Os05t0231100-00
Chr05	irgsp1_rep	CDS	7974256	7974467	.	-	1	Parent=Os05t0231100-00
Chr05	irgsp1_rep	CDS	7973796	7974150	.	-	2	Parent=Os05t0231100-00
Chr05	irgsp1_rep	CDS	7973135	7973690	.	-	1	Parent=Os05t0231100-00
Chr05	irgsp1_rep	three_prime_UTR	7973020	7973134	.	-	.	Parent=Os05t0231100-00
Chr05	irgsp1_rep	mRNA	8000547	8001418	.	-	.	ID=Os05t0231600-01;Name=Os05t0231600-01;Locus_id=Os05g0231600;Note=Similar to Aquaglyceroporin (Tonoplast intrinsic protein (Tipa)).;Transcript_evidence=AK119476 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-134-B08;Expression=AK119476;TENOR=Os05t0231600-01;KEGG=Os05t0231600-01
Chr05	irgsp1_rep	five_prime_UTR	8001030	8001418	.	-	.	Parent=Os05t0231600-01
Chr05	irgsp1_rep	CDS	8000676	8001029	.	-	0	Parent=Os05t0231600-01
Chr05	irgsp1_rep	three_prime_UTR	8000547	8000675	.	-	.	Parent=Os05t0231600-01
Chr05	irgsp1_rep	mRNA	8000718	8002989	.	+	.	ID=Os05t0231700-01;Name=Os05t0231700-01;Locus_id=Os05g0231700;CGSNL Gene Symbol=TIP4%3B1;CGSNL Gene Name=TONOPLAST INTRINSIC PROTEIN 4%3B1;Oryzabase Gene Symbol Synonym(s)=OsTIP4%3B1%2C TIP4-1;Oryzabase Gene Name Synonym(s)=Probable aquaporin TIP4-1%2C Tonoplast intrinsic protein 4-1;Note=Similar to Tonoplast intrinsic protein.;Transcript_evidence=AK072531 (DDBJ%2C Best hit),AK060193 (DDBJ%2C Best hit);ORF_evidence=D2KZ42 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Major intrinsic protein%2C conserved site (IPR022357),Aquaporin-like (IPR023271);NIAS_FLcDNA=J023131O04,001-001-E07;Oryzabase=8384;TENOR=Os05t0231700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	8000718	8000718	.	+	.	Parent=Os05t0231700-01
Chr05	irgsp1_rep	CDS	8000719	8001037	.	+	0	Parent=Os05t0231700-01
Chr05	irgsp1_rep	CDS	8001138	8001391	.	+	2	Parent=Os05t0231700-01
Chr05	irgsp1_rep	CDS	8002313	8002684	.	+	0	Parent=Os05t0231700-01
Chr05	irgsp1_rep	three_prime_UTR	8002685	8002989	.	+	.	Parent=Os05t0231700-01
Chr05	irgsp1_rep	mRNA	8005590	8005879	.	-	.	ID=Os05t0231900-01;Name=Os05t0231900-01;Locus_id=Os05g0231900;Oryzabase Gene Symbol Synonym(s)=prx73;Oryzabase Gene Name Synonym(s)=class III peroxidase 73;Note=Hypothetical conserved gene.;Transcript_evidence=AK242381 (DDBJ%2C Best hit);ORF_evidence=B9FJB2 (UniProt);NIAS_FLcDNA=J080044A06;Oryzabase=14597;TENOR=Os05t0231900-01;KEGG=Os05t0231900-01
Chr05	irgsp1_rep	CDS	8005760	8005879	.	-	0	Parent=Os05t0231900-01
Chr05	irgsp1_rep	three_prime_UTR	8005590	8005759	.	-	.	Parent=Os05t0231900-01
Chr05	irgsp1_rep	mRNA	8014406	8017467	.	+	.	ID=Os05t0232200-01;Name=Os05t0232200-01;Locus_id=Os05g0232200;Note=Conserved hypothetical protein.;Transcript_evidence=AK071646 (DDBJ%2C Best hit);ORF_evidence=B9FNC8 (UniProt);NIAS_FLcDNA=J023106B01;TENOR=Os05t0232200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	8014406	8014482	.	+	.	Parent=Os05t0232200-01
Chr05	irgsp1_rep	CDS	8014483	8014549	.	+	0	Parent=Os05t0232200-01
Chr05	irgsp1_rep	CDS	8014628	8014682	.	+	2	Parent=Os05t0232200-01
Chr05	irgsp1_rep	CDS	8014811	8014884	.	+	1	Parent=Os05t0232200-01
Chr05	irgsp1_rep	CDS	8014981	8015111	.	+	2	Parent=Os05t0232200-01
Chr05	irgsp1_rep	CDS	8015239	8015302	.	+	0	Parent=Os05t0232200-01
Chr05	irgsp1_rep	CDS	8015650	8015876	.	+	2	Parent=Os05t0232200-01
Chr05	irgsp1_rep	CDS	8016233	8016760	.	+	0	Parent=Os05t0232200-01
Chr05	irgsp1_rep	CDS	8017050	8017146	.	+	0	Parent=Os05t0232200-01
Chr05	irgsp1_rep	CDS	8017228	8017283	.	+	2	Parent=Os05t0232200-01
Chr05	irgsp1_rep	three_prime_UTR	8017284	8017467	.	+	.	Parent=Os05t0232200-01
Chr05	irgsp1_rep	mRNA	8034111	8039392	.	+	.	ID=Os05t0232500-01;Name=Os05t0232500-01;Locus_id=Os05g0232500;CGSNL Gene Symbol=UBC43;CGSNL Gene Name=UBIQUITIN-CONJUGATING ENZYME 43;Oryzabase Gene Symbol Synonym(s)=OsUBC43;Oryzabase Gene Name Synonym(s)=Ubiquitin-conjugating enzyme 43;Note=Ubiquitin-conjugating enzyme/RWD-like domain containing protein.;Transcript_evidence=AK069430 (DDBJ%2C Best hit);ORF_evidence=B8AZQ0 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135);NIAS_FLcDNA=J023019A14;Oryzabase=19576;Expression=AK069430;TENOR=Os05t0232500-01;KEGG=Os05t0232500-01
Chr05	irgsp1_rep	five_prime_UTR	8034111	8034186	.	+	.	Parent=Os05t0232500-01
Chr05	irgsp1_rep	CDS	8034187	8034200	.	+	0	Parent=Os05t0232500-01
Chr05	irgsp1_rep	CDS	8034323	8034440	.	+	1	Parent=Os05t0232500-01
Chr05	irgsp1_rep	CDS	8036926	8037327	.	+	0	Parent=Os05t0232500-01
Chr05	irgsp1_rep	CDS	8037410	8037473	.	+	0	Parent=Os05t0232500-01
Chr05	irgsp1_rep	CDS	8037896	8038035	.	+	2	Parent=Os05t0232500-01
Chr05	irgsp1_rep	CDS	8038123	8038434	.	+	0	Parent=Os05t0232500-01
Chr05	irgsp1_rep	CDS	8038751	8039104	.	+	0	Parent=Os05t0232500-01
Chr05	irgsp1_rep	three_prime_UTR	8039105	8039392	.	+	.	Parent=Os05t0232500-01
Chr05	irgsp1_rep	mRNA	8038258	8039010	.	-	.	ID=Os05t0232566-00;Name=Os05t0232566-00;Locus_id=Os05g0232566;Note=Non-protein coding transcript.;Transcript_evidence=EU945758 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0232566-00
Chr05	irgsp1_rep	exon	8038705	8039010	.	-	.	Parent=Os05t0232566-00
Chr05	irgsp1_rep	exon	8038258	8038471	.	-	.	Parent=Os05t0232566-00
Chr05	irgsp1_rep	mRNA	8044658	8045102	.	+	.	ID=Os05t0232632-00;Name=Os05t0232632-00;Locus_id=Os05g0232632;Note=Non-protein coding transcript.;Transcript_evidence=CU405978 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os05t0232632-00
Chr05	irgsp1_rep	exon	8044658	8045102	.	+	.	Parent=Os05t0232632-00
Chr05	irgsp1_rep	mRNA	8046789	8047587	.	+	.	ID=Os05t0232700-01;Name=Os05t0232700-01;Locus_id=Os05g0232700;Note=Conserved hypothetical protein.;Transcript_evidence=AK107863 (DDBJ%2C Best hit);ORF_evidence=A2Y236 (UniProt);NIAS_FLcDNA=002-134-B11;Expression=AK107863;TENOR=Os05t0232700-01;KEGG=Os05t0232700-01
Chr05	irgsp1_rep	five_prime_UTR	8046789	8046911	.	+	.	Parent=Os05t0232700-01
Chr05	irgsp1_rep	CDS	8046912	8047325	.	+	0	Parent=Os05t0232700-01
Chr05	irgsp1_rep	three_prime_UTR	8047326	8047587	.	+	.	Parent=Os05t0232700-01
Chr05	irgsp1_rep	mRNA	8053522	8056940	.	-	.	ID=Os05t0232800-00;Name=Os05t0232800-00;Locus_id=Os05g0232800;Note=Similar to HAT family dimerisation domain containing protein.;Transcript_evidence=AK122139 (DDBJ%2C Secondary hit);ORF_evidence=Q2QPA8 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677);InterPro=Zinc finger%2C BED-type predicted (IPR003656),Domain of unknown function DUF659 (IPR007021),Ribonuclease H-like (IPR012337);TENOR=Os05t0232800-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	8056652	8056940	.	-	.	Parent=Os05t0232800-00
Chr05	irgsp1_rep	CDS	8056636	8056651	.	-	0	Parent=Os05t0232800-00
Chr05	irgsp1_rep	CDS	8055049	8056355	.	-	2	Parent=Os05t0232800-00
Chr05	irgsp1_rep	three_prime_UTR	8054327	8055048	.	-	.	Parent=Os05t0232800-00
Chr05	irgsp1_rep	three_prime_UTR	8053994	8054209	.	-	.	Parent=Os05t0232800-00
Chr05	irgsp1_rep	three_prime_UTR	8053522	8053966	.	-	.	Parent=Os05t0232800-00
Chr05	irgsp1_rep	mRNA	8080835	8082069	.	+	.	ID=Os05t0233000-01;Name=Os05t0233000-01;Locus_id=Os05g0233000;Note=Conserved hypothetical protein.;Transcript_evidence=AK242502 (DDBJ%2C Best hit);ORF_evidence=Q6F2R7 (UniProt);NIAS_FLcDNA=J080308O05;TENOR=Os05t0233000-01;KEGG=Os05t0233000-01
Chr05	irgsp1_rep	CDS	8080835	8081833	.	+	0	Parent=Os05t0233000-01
Chr05	irgsp1_rep	three_prime_UTR	8081834	8082069	.	+	.	Parent=Os05t0233000-01
Chr05	irgsp1_rep	mRNA	8154422	8174151	.	-	.	ID=Os05t0234366-00;Name=Os05t0234366-00;Locus_id=Os05g0234366;Note=Hypothetical gene.;Transcript_evidence=CT837896 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;TENOR=Os05t0234366-00;KEGG=Os05t0234366-00
Chr05	irgsp1_rep	five_prime_UTR	8174150	8174151	.	-	.	Parent=Os05t0234366-00
Chr05	irgsp1_rep	CDS	8174018	8174149	.	-	0	Parent=Os05t0234366-00
Chr05	irgsp1_rep	CDS	8173690	8173965	.	-	0	Parent=Os05t0234366-00
Chr05	irgsp1_rep	three_prime_UTR	8173181	8173689	.	-	.	Parent=Os05t0234366-00
Chr05	irgsp1_rep	three_prime_UTR	8172497	8172705	.	-	.	Parent=Os05t0234366-00
Chr05	irgsp1_rep	three_prime_UTR	8158890	8159513	.	-	.	Parent=Os05t0234366-00
Chr05	irgsp1_rep	three_prime_UTR	8155959	8156013	.	-	.	Parent=Os05t0234366-00
Chr05	irgsp1_rep	three_prime_UTR	8154422	8154793	.	-	.	Parent=Os05t0234366-00
Chr05	irgsp1_rep	mRNA	8264714	8290967	.	+	.	ID=Os05t0235300-01;Name=Os05t0235300-01;Locus_id=Os05g0235300;RAP-DB Gene Symbol Synonym(s)=OsTOR%2C TOR;RAP-DB Gene Name Synonym(s)=target of rapamycin;Oryzabase Gene Symbol Synonym(s)=OsTOR%2C TOR;Oryzabase Gene Name Synonym(s)=target of rapamycin;Note=Serine/threonine (Ser/Thr) protein kinase%2C Modulation of thylakoid membrane lipid biosynthesis%2C homeostasis;Transcript_evidence=AB982929,XM_015784081.1.;ORF_evidence=Q0DJS1;GO=Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515),Molecular Function: kinase activity (GO:0016301),Molecular Function: macromolecular complex binding (GO:0044877);InterPro=Serine/threonine-protein kinase TOR (IPR026683),Armadillo-type fold (IPR016024),Armadillo-like helical (IPR011989),Domain of unknown function DUF3385%2C  target of rapamycin protein (IPR024585),PIK-related kinase (IPR014009),PIK-related kinase%2C FAT (IPR003151),FKBP12-rapamycin binding domain (IPR009076),Protein kinase-like domain (IPR011009),Phosphatidylinositol 3-/4-kinase%2C catalytic domain (IPR000403),FATC domain (IPR003152),Phosphatidylinositol 3/4-kinase%2C conserved site (IPR018936);Manual Curation=July 27%2C 2016;Literature_PMID=25956502,27102613;Oryzabase=19881;TENOR=Os05t0235300-01;KEGG=Os05t0235300-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	8264714	8264830	.	+	.	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8264831	8264876	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8265008	8265063	.	+	2	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8265894	8266232	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8266303	8266377	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8267039	8267211	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8269062	8269160	.	+	1	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8269367	8269526	.	+	1	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8269686	8269829	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8269916	8270088	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8270161	8270356	.	+	1	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8270426	8270623	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8271229	8271381	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8272203	8272324	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8272402	8272501	.	+	1	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8272586	8272681	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8272765	8272895	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8274082	8274184	.	+	1	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8274738	8274920	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8274997	8275089	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8275183	8275218	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8276037	8276138	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8276262	8276372	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8276675	8276837	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8276922	8277043	.	+	2	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8277152	8277204	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8277400	8277523	.	+	1	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8278032	8278214	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8279044	8279196	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8279501	8279653	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8279738	8279809	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8279895	8280029	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8280104	8280165	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8280364	8280461	.	+	1	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8280993	8281102	.	+	2	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8281197	8281370	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8281457	8281522	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8282212	8282280	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8282354	8282464	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8282783	8282923	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8283003	8283131	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8283229	8283394	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8283539	8283753	.	+	2	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8285248	8285454	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8286262	8286375	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8286455	8286646	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8286854	8286934	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8287019	8287093	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8287177	8287243	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8287657	8287817	.	+	2	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8288308	8288481	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8288574	8288702	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8288786	8288869	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8288954	8289015	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8289093	8289165	.	+	1	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8289373	8289507	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8290155	8290325	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8290419	8290684	.	+	0	Parent=Os05t0235300-01
Chr05	irgsp1_rep	CDS	8290805	8290823	.	+	1	Parent=Os05t0235300-01
Chr05	irgsp1_rep	three_prime_UTR	8290824	8290967	.	+	.	Parent=Os05t0235300-01
Chr05	irgsp1_rep	mRNA	8296984	8297494	.	+	.	ID=Os05t0235450-00;Name=Os05t0235450-00;Locus_id=Os05g0235450;Note=Hypothetical conserved gene.;Transcript_evidence=AK248853 (DDBJ);ORF_evidence=B8A8D6 (UniProt);InterPro=Protein of unknown function DUF778 (IPR008496);TENOR=Os05t0235450-00;KEGG=Os05t0235450-00
Chr05	irgsp1_rep	five_prime_UTR	8296984	8296985	.	+	.	Parent=Os05t0235450-00
Chr05	irgsp1_rep	CDS	8296986	8297324	.	+	0	Parent=Os05t0235450-00
Chr05	irgsp1_rep	three_prime_UTR	8297325	8297494	.	+	.	Parent=Os05t0235450-00
Chr05	irgsp1_rep	mRNA	8301019	8303268	.	+	.	ID=Os05t0235600-00;Name=Os05t0235600-00;Locus_id=Os05g0235600;Note=Similar to Nucleosome assembly protein 1-like protein 2.;Transcript_evidence=BT055303 (DDBJ);ORF_evidence=Q70Z18 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleus (GO:0005634);InterPro=Nucleosome assembly protein (NAP) (IPR002164);TENOR=Os05t0235600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	8301019	8301066	.	+	.	Parent=Os05t0235600-00
Chr05	irgsp1_rep	five_prime_UTR	8301158	8301253	.	+	.	Parent=Os05t0235600-00
Chr05	irgsp1_rep	five_prime_UTR	8301670	8301762	.	+	.	Parent=Os05t0235600-00
Chr05	irgsp1_rep	five_prime_UTR	8301950	8302004	.	+	.	Parent=Os05t0235600-00
Chr05	irgsp1_rep	five_prime_UTR	8302065	8302182	.	+	.	Parent=Os05t0235600-00
Chr05	irgsp1_rep	five_prime_UTR	8302340	8302503	.	+	.	Parent=Os05t0235600-00
Chr05	irgsp1_rep	CDS	8302504	8302526	.	+	0	Parent=Os05t0235600-00
Chr05	irgsp1_rep	CDS	8302631	8302803	.	+	1	Parent=Os05t0235600-00
Chr05	irgsp1_rep	CDS	8302897	8302933	.	+	2	Parent=Os05t0235600-00
Chr05	irgsp1_rep	CDS	8303124	8303268	.	+	1	Parent=Os05t0235600-00
Chr05	irgsp1_rep	mRNA	8305741	8306159	.	-	.	ID=Os05t0235701-00;Name=Os05t0235701-00;Locus_id=Os05g0235701;Note=Similar to Geranylgeranyl diphosphate synthase (Fragment).;Transcript_evidence=BT009461 (DDBJ);ORF_evidence=Q1ZZ94 (UniProt);GO=Biological Process: isoprenoid biosynthetic process (GO:0008299);InterPro=Polyprenyl synthetase (IPR000092),Terpenoid synthase (IPR008949),Polyprenyl synthetase-related (IPR017446);TENOR=Os05t0235701-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	8306098	8306159	.	-	.	Parent=Os05t0235701-00
Chr05	irgsp1_rep	CDS	8305792	8306097	.	-	0	Parent=Os05t0235701-00
Chr05	irgsp1_rep	three_prime_UTR	8305741	8305791	.	-	.	Parent=Os05t0235701-00
Chr05	irgsp1_rep	mRNA	8312907	8319399	.	+	.	ID=Os05t0235800-01;Name=Os05t0235800-01;Locus_id=Os05g0235800;CGSNL Gene Symbol=MCM6;CGSNL Gene Name=MINI-CHROMOSOME MAINTENANCE PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsMCM6;Note=DNA-dependent ATPase MCM domain containing protein.;Transcript_evidence=AK102937 (DDBJ%2C Best hit);ORF_evidence=NP_001105289.1 (RefSeq);GO=Biological Process: DNA replication (GO:0006260),Biological Process: DNA-dependent DNA replication initiation (GO:0006270),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP binding (GO:0005524);InterPro=Mini-Chromosome maintenance%2C DNA-dependent ATPase (IPR001208),Mini-Chromosome maintenance complex protein 6 (IPR008049),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),Mini-Chromosome maintenance%2C conserved site (IPR018525);NIAS_FLcDNA=J033114J19;Oryzabase=9198;Expression=AK102937;TENOR=Os05t0235800-01;KEGG=Os05t0235800-01
Chr05	irgsp1_rep	five_prime_UTR	8312907	8313012	.	+	.	Parent=Os05t0235800-01
Chr05	irgsp1_rep	CDS	8313013	8313089	.	+	0	Parent=Os05t0235800-01
Chr05	irgsp1_rep	CDS	8313209	8313358	.	+	1	Parent=Os05t0235800-01
Chr05	irgsp1_rep	CDS	8313576	8313716	.	+	1	Parent=Os05t0235800-01
Chr05	irgsp1_rep	CDS	8314023	8314185	.	+	1	Parent=Os05t0235800-01
Chr05	irgsp1_rep	CDS	8314266	8314459	.	+	0	Parent=Os05t0235800-01
Chr05	irgsp1_rep	CDS	8314539	8314734	.	+	1	Parent=Os05t0235800-01
Chr05	irgsp1_rep	CDS	8314827	8314904	.	+	0	Parent=Os05t0235800-01
Chr05	irgsp1_rep	CDS	8315298	8315527	.	+	0	Parent=Os05t0235800-01
Chr05	irgsp1_rep	CDS	8315939	8316053	.	+	1	Parent=Os05t0235800-01
Chr05	irgsp1_rep	CDS	8316243	8316317	.	+	0	Parent=Os05t0235800-01
Chr05	irgsp1_rep	CDS	8316397	8316537	.	+	0	Parent=Os05t0235800-01
Chr05	irgsp1_rep	CDS	8316674	8316877	.	+	0	Parent=Os05t0235800-01
Chr05	irgsp1_rep	CDS	8316951	8317112	.	+	0	Parent=Os05t0235800-01
Chr05	irgsp1_rep	CDS	8317328	8317380	.	+	0	Parent=Os05t0235800-01
Chr05	irgsp1_rep	CDS	8317461	8317588	.	+	1	Parent=Os05t0235800-01
Chr05	irgsp1_rep	CDS	8317681	8317803	.	+	2	Parent=Os05t0235800-01
Chr05	irgsp1_rep	CDS	8318542	8318672	.	+	2	Parent=Os05t0235800-01
Chr05	irgsp1_rep	CDS	8318892	8319023	.	+	0	Parent=Os05t0235800-01
Chr05	irgsp1_rep	three_prime_UTR	8319024	8319399	.	+	.	Parent=Os05t0235800-01
Chr05	irgsp1_rep	mRNA	8345447	8347374	.	-	.	ID=Os05t0236600-00;Name=Os05t0236600-00;Locus_id=Os05g0236600;Note=Protein of unknown function DUF594 domain containing protein.;Transcript_evidence=AK250264 (DDBJ);ORF_evidence=Q6F350 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);TENOR=Os05t0236600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	8347328	8347374	.	-	.	Parent=Os05t0236600-00
Chr05	irgsp1_rep	CDS	8345447	8347327	.	-	0	Parent=Os05t0236600-00
Chr05	irgsp1_rep	mRNA	8368767	8370280	.	+	.	ID=Os05t0237100-01;Name=Os05t0237100-01;Locus_id=Os05g0237100;Note=Cyclin%2C C-terminal domain containing protein.;Transcript_evidence=AK103430 (DDBJ%2C Best hit);ORF_evidence=longestORF;GO=Biological Process: regulation of cyclin-dependent protein kinase activity (GO:0000079),Biological Process: regulation of cell cycle (GO:0051726),Cellular Component: nucleus (GO:0005634),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin%2C C-terminal (IPR004367),Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763),Cyclin A/B/D/E (IPR014400);NIAS_FLcDNA=J033128M15;TENOR=Os05t0237100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	8368767	8368787	.	+	.	Parent=Os05t0237100-01
Chr05	irgsp1_rep	CDS	8368788	8368825	.	+	0	Parent=Os05t0237100-01
Chr05	irgsp1_rep	CDS	8368924	8368999	.	+	1	Parent=Os05t0237100-01
Chr05	irgsp1_rep	CDS	8369074	8369150	.	+	0	Parent=Os05t0237100-01
Chr05	irgsp1_rep	CDS	8369231	8369264	.	+	1	Parent=Os05t0237100-01
Chr05	irgsp1_rep	CDS	8369348	8369497	.	+	0	Parent=Os05t0237100-01
Chr05	irgsp1_rep	CDS	8369587	8369721	.	+	0	Parent=Os05t0237100-01
Chr05	irgsp1_rep	CDS	8369815	8369898	.	+	0	Parent=Os05t0237100-01
Chr05	irgsp1_rep	three_prime_UTR	8369899	8370280	.	+	.	Parent=Os05t0237100-01
Chr05	irgsp1_rep	mRNA	8371897	8376033	.	-	.	ID=Os05t0237200-01;Name=Os05t0237200-01;Locus_id=Os05g0237200;Note=CytoChrome b561%2C eukaryote domain containing protein.;Transcript_evidence=AK287472 (DDBJ%2C Best hit);ORF_evidence=NP_001174287.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=CytoChrome b561%2C eukaryote (IPR004877),DOMON domain (IPR005018),CytoChrome b561/ferric reductase transmembrane (IPR006593);NIAS_FLcDNA=J043022H05;TENOR=Os05t0237200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	8375211	8376033	.	-	.	Parent=Os05t0237200-01
Chr05	irgsp1_rep	CDS	8375157	8375210	.	-	0	Parent=Os05t0237200-01
Chr05	irgsp1_rep	CDS	8373975	8374377	.	-	0	Parent=Os05t0237200-01
Chr05	irgsp1_rep	CDS	8372475	8372758	.	-	2	Parent=Os05t0237200-01
Chr05	irgsp1_rep	CDS	8372083	8372370	.	-	0	Parent=Os05t0237200-01
Chr05	irgsp1_rep	three_prime_UTR	8371897	8372082	.	-	.	Parent=Os05t0237200-01
Chr05	irgsp1_rep	mRNA	8375218	8376002	.	-	.	ID=Os05t0237200-02;Name=Os05t0237200-02;Locus_id=Os05g0237200;Note=Non-protein coding transcript.;Transcript_evidence=AK107971 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-135-D07;TENOR=Os05t0237200-02
Chr05	irgsp1_rep	exon	8375218	8376002	.	-	.	Parent=Os05t0237200-02
Chr05	irgsp1_rep	mRNA	8378906	8382300	.	+	.	ID=Os05t0237400-01;Name=Os05t0237400-01;Locus_id=Os05g0237400;Note=Similar to Viroid symptom modulation protein.;Transcript_evidence=AK072256 (DDBJ%2C Best hit),AK107045 (DDBJ%2C Best hit);ORF_evidence=Q9M728 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023009I16,002-121-C08;Expression=AK072256;TENOR=Os05t0237400-01;KEGG=Os05t0237400-01 (EC:2.7.11.1)
Chr05	irgsp1_rep	five_prime_UTR	8378906	8379072	.	+	.	Parent=Os05t0237400-01
Chr05	irgsp1_rep	five_prime_UTR	8379845	8379882	.	+	.	Parent=Os05t0237400-01
Chr05	irgsp1_rep	CDS	8379883	8380685	.	+	0	Parent=Os05t0237400-01
Chr05	irgsp1_rep	CDS	8381288	8382209	.	+	1	Parent=Os05t0237400-01
Chr05	irgsp1_rep	three_prime_UTR	8382210	8382300	.	+	.	Parent=Os05t0237400-01
Chr05	irgsp1_rep	mRNA	8381285	8382122	.	-	.	ID=Os05t0237501-00;Name=Os05t0237501-00;Locus_id=Os05g0237501;Note=Hypothetical gene.;Transcript_evidence=EU943630 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0237501-00;KEGG=Os05t0237501-00
Chr05	irgsp1_rep	CDS	8381307	8382122	.	-	0	Parent=Os05t0237501-00
Chr05	irgsp1_rep	three_prime_UTR	8381285	8381306	.	-	.	Parent=Os05t0237501-00
Chr05	irgsp1_rep	mRNA	8427409	8429533	.	-	.	ID=Os05t0237800-00;Name=Os05t0237800-00;Locus_id=Os05g0237800;Oryzabase Gene Symbol Synonym(s)=OsLHT8%2C LHT8%2C OsLHT3%2C LHT3;Oryzabase Gene Name Synonym(s)=lysine-histidine-like transporter 8%2C lysine and histidine transporter 3;Note=Similar to Histidine amino acid transporter.;Transcript_evidence=EU956703 (DDBJ);ORF_evidence=Q85V22 (UniProt);InterPro=Amino acid transporter%2C transmembrane (IPR013057);Oryzabase=18505;TENOR=Os05t0237800-00;KEGG=Os05t0237800-00
Chr05	irgsp1_rep	five_prime_UTR	8429408	8429533	.	-	.	Parent=Os05t0237800-00
Chr05	irgsp1_rep	CDS	8428297	8429407	.	-	0	Parent=Os05t0237800-00
Chr05	irgsp1_rep	CDS	8427778	8427869	.	-	2	Parent=Os05t0237800-00
Chr05	irgsp1_rep	CDS	8427603	8427671	.	-	0	Parent=Os05t0237800-00
Chr05	irgsp1_rep	CDS	8427409	8427507	.	-	0	Parent=Os05t0237800-00
Chr05	irgsp1_rep	mRNA	8429682	8434230	.	+	.	ID=Os05t0238000-01;Name=Os05t0238000-01;Locus_id=Os05g0238000;Note=Similar to CytoChrome P450 family protein.;Transcript_evidence=AK288481 (DDBJ%2C Best hit);ORF_evidence=Q33AU0 (UniProt);NIAS_FLcDNA=J090039O20;TENOR=Os05t0238000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	8429682	8432136	.	+	.	Parent=Os05t0238000-01
Chr05	irgsp1_rep	CDS	8432137	8432385	.	+	0	Parent=Os05t0238000-01
Chr05	irgsp1_rep	three_prime_UTR	8432386	8434230	.	+	.	Parent=Os05t0238000-01
Chr05	irgsp1_rep	mRNA	8440438	8445684	.	+	.	ID=Os05t0238200-01;Name=Os05t0238200-01;Locus_id=Os05g0238200;Oryzabase Gene Symbol Synonym(s)=SIP33;Oryzabase Gene Name Synonym(s)=SKIP interacting protein 33%2C SKIPa-interacting protein 33%2C SKIPa-interacting protein 33;Note=Similar to Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven in absentia homolog 5).;Transcript_evidence=AK289198 (DDBJ%2C Best hit);ORF_evidence=B8Q8B9 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Biological Process: multicellular organismal development (GO:0007275),Biological Process: protein ubiquitination (GO:0016567),Cellular Component: nucleus (GO:0005634),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Seven-in-absentia protein%2C sina (IPR004162),TRAF-like (IPR008974),Zinc finger%2C SIAH-type (IPR013010),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),TRAF-type (IPR013322),Seven In Absentia Homolog-type (IPR013323),Seven-in-absentia protein%2C TRAF-like domain (IPR018121);NIAS_FLcDNA=J100046M22;Oryzabase=9965;TENOR=Os05t0238200-01;KEGG=Os05t0238200-01 (EC:6.3.2.19)
Chr05	irgsp1_rep	five_prime_UTR	8440438	8440574	.	+	.	Parent=Os05t0238200-01
Chr05	irgsp1_rep	CDS	8440575	8440913	.	+	0	Parent=Os05t0238200-01
Chr05	irgsp1_rep	CDS	8444655	8445041	.	+	0	Parent=Os05t0238200-01
Chr05	irgsp1_rep	CDS	8445124	8445483	.	+	0	Parent=Os05t0238200-01
Chr05	irgsp1_rep	three_prime_UTR	8445484	8445684	.	+	.	Parent=Os05t0238200-01
Chr05	irgsp1_rep	mRNA	8450507	8451797	.	-	.	ID=Os05t0238400-01;Name=Os05t0238400-01;Locus_id=Os05g0238400;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK073471 (DDBJ%2C Best hit);ORF_evidence=NP_001147348.1 (RefSeq);NIAS_FLcDNA=J033044N23;Expression=AK073471;TENOR=Os05t0238400-01;KEGG=Os05t0238400-01
Chr05	irgsp1_rep	five_prime_UTR	8451669	8451797	.	-	.	Parent=Os05t0238400-01
Chr05	irgsp1_rep	CDS	8450967	8451668	.	-	0	Parent=Os05t0238400-01
Chr05	irgsp1_rep	three_prime_UTR	8450507	8450966	.	-	.	Parent=Os05t0238400-01
Chr05	irgsp1_rep	mRNA	8475636	8477846	.	-	.	ID=Os05t0239100-01;Name=Os05t0239100-01;Locus_id=Os05g0239100;Note=Hypothetical protein.;Transcript_evidence=AK105514 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-127-F02;Expression=AK105514;TENOR=Os05t0239100-01;KEGG=Os05t0239100-01
Chr05	irgsp1_rep	five_prime_UTR	8477605	8477846	.	-	.	Parent=Os05t0239100-01
Chr05	irgsp1_rep	CDS	8477570	8477604	.	-	0	Parent=Os05t0239100-01
Chr05	irgsp1_rep	CDS	8476869	8477103	.	-	1	Parent=Os05t0239100-01
Chr05	irgsp1_rep	three_prime_UTR	8475636	8476868	.	-	.	Parent=Os05t0239100-01
Chr05	irgsp1_rep	mRNA	8478869	8481260	.	+	.	ID=Os05t0239151-00;Name=Os05t0239151-00;Locus_id=Os05g0239151;Note=Hypothetical protein.;Transcript_evidence=tplb0026a01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0239151-00
Chr05	irgsp1_rep	five_prime_UTR	8478869	8479221	.	+	.	Parent=Os05t0239151-00
Chr05	irgsp1_rep	CDS	8479222	8479497	.	+	0	Parent=Os05t0239151-00
Chr05	irgsp1_rep	three_prime_UTR	8479498	8481260	.	+	.	Parent=Os05t0239151-00
Chr05	irgsp1_rep	mRNA	8485045	8485825	.	-	.	ID=Os05t0239350-01;Name=Os05t0239350-01;Locus_id=Os05g0239350;Note=Hypothetical gene.;Transcript_evidence=AK243397 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100064F14;TENOR=Os05t0239350-01;KEGG=Os05t0239350-01
Chr05	irgsp1_rep	five_prime_UTR	8485824	8485825	.	-	.	Parent=Os05t0239350-01
Chr05	irgsp1_rep	CDS	8485395	8485823	.	-	0	Parent=Os05t0239350-01
Chr05	irgsp1_rep	three_prime_UTR	8485045	8485394	.	-	.	Parent=Os05t0239350-01
Chr05	irgsp1_rep	mRNA	8488169	8492925	.	+	.	ID=Os05t0239400-00;Name=Os05t0239400-00;Locus_id=Os05g0239400;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FNE9 (UniProt);TENOR=Os05t0239400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	8488169	8488440	.	+	0	Parent=Os05t0239400-00
Chr05	irgsp1_rep	CDS	8491887	8492925	.	+	1	Parent=Os05t0239400-00
Chr05	irgsp1_rep	mRNA	8499986	8504483	.	+	.	ID=Os05t0239900-01;Name=Os05t0239900-01;Locus_id=Os05g0239900;Note=Non-protein coding transcript.;Transcript_evidence=AK121499 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J033014J07;TENOR=Os05t0239900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	exon	8499986	8500211	.	+	.	Parent=Os05t0239900-01
Chr05	irgsp1_rep	exon	8500925	8501029	.	+	.	Parent=Os05t0239900-01
Chr05	irgsp1_rep	exon	8502526	8502590	.	+	.	Parent=Os05t0239900-01
Chr05	irgsp1_rep	exon	8502853	8504483	.	+	.	Parent=Os05t0239900-01
Chr05	irgsp1_rep	mRNA	8526412	8535211	.	-	.	ID=Os05t0240200-01;Name=Os05t0240200-01;Locus_id=Os05g0240200;Oryzabase Gene Symbol Synonym(s)=OsWD40-115;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=AK100136 (DDBJ%2C Best hit);ORF_evidence=Q2RB05 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J023010H12;Oryzabase=10796;TENOR=Os05t0240200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	8534893	8535211	.	-	.	Parent=Os05t0240200-01
Chr05	irgsp1_rep	CDS	8534072	8534892	.	-	0	Parent=Os05t0240200-01
Chr05	irgsp1_rep	CDS	8531132	8533232	.	-	1	Parent=Os05t0240200-01
Chr05	irgsp1_rep	CDS	8530007	8530126	.	-	0	Parent=Os05t0240200-01
Chr05	irgsp1_rep	CDS	8529532	8529660	.	-	0	Parent=Os05t0240200-01
Chr05	irgsp1_rep	three_prime_UTR	8529287	8529531	.	-	.	Parent=Os05t0240200-01
Chr05	irgsp1_rep	three_prime_UTR	8529004	8529132	.	-	.	Parent=Os05t0240200-01
Chr05	irgsp1_rep	three_prime_UTR	8527769	8527939	.	-	.	Parent=Os05t0240200-01
Chr05	irgsp1_rep	three_prime_UTR	8527385	8527570	.	-	.	Parent=Os05t0240200-01
Chr05	irgsp1_rep	three_prime_UTR	8527021	8527193	.	-	.	Parent=Os05t0240200-01
Chr05	irgsp1_rep	three_prime_UTR	8526412	8526907	.	-	.	Parent=Os05t0240200-01
Chr05	irgsp1_rep	mRNA	8528874	8535188	.	-	.	ID=Os05t0240200-02;Name=Os05t0240200-02;Locus_id=Os05g0240200;Oryzabase Gene Symbol Synonym(s)=OsWD40-115;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=AK064430 (DDBJ%2C Best hit);ORF_evidence=Q2RB05 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: protein binding (GO:0005515),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943);NIAS_FLcDNA=002-110-C12;Oryzabase=10796;TENOR=Os05t0240200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	8534893	8535188	.	-	.	Parent=Os05t0240200-02
Chr05	irgsp1_rep	CDS	8534072	8534892	.	-	0	Parent=Os05t0240200-02
Chr05	irgsp1_rep	CDS	8531132	8533232	.	-	1	Parent=Os05t0240200-02
Chr05	irgsp1_rep	CDS	8530007	8530126	.	-	0	Parent=Os05t0240200-02
Chr05	irgsp1_rep	CDS	8529550	8529660	.	-	0	Parent=Os05t0240200-02
Chr05	irgsp1_rep	CDS	8529287	8529463	.	-	0	Parent=Os05t0240200-02
Chr05	irgsp1_rep	CDS	8528893	8529132	.	-	0	Parent=Os05t0240200-02
Chr05	irgsp1_rep	three_prime_UTR	8528874	8528892	.	-	.	Parent=Os05t0240200-02
Chr05	irgsp1_rep	mRNA	8526487	8535118	.	-	.	ID=Os05t0240200-03;Name=Os05t0240200-03;Locus_id=Os05g0240200;Oryzabase Gene Symbol Synonym(s)=OsWD40-115;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=AK099775 (DDBJ%2C Best hit);ORF_evidence=Q2RB05 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: protein binding (GO:0005515),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),WD40 repeat (IPR001680),NB-ARC (IPR002182),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J013095E22;Oryzabase=10796;TENOR=Os05t0240200-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	8534893	8535118	.	-	.	Parent=Os05t0240200-03
Chr05	irgsp1_rep	CDS	8534072	8534892	.	-	0	Parent=Os05t0240200-03
Chr05	irgsp1_rep	CDS	8531132	8533232	.	-	1	Parent=Os05t0240200-03
Chr05	irgsp1_rep	CDS	8530007	8530126	.	-	0	Parent=Os05t0240200-03
Chr05	irgsp1_rep	CDS	8529550	8529660	.	-	0	Parent=Os05t0240200-03
Chr05	irgsp1_rep	CDS	8529287	8529463	.	-	0	Parent=Os05t0240200-03
Chr05	irgsp1_rep	CDS	8529004	8529132	.	-	0	Parent=Os05t0240200-03
Chr05	irgsp1_rep	CDS	8527844	8527939	.	-	0	Parent=Os05t0240200-03
Chr05	irgsp1_rep	CDS	8527385	8527570	.	-	0	Parent=Os05t0240200-03
Chr05	irgsp1_rep	CDS	8527021	8527193	.	-	0	Parent=Os05t0240200-03
Chr05	irgsp1_rep	CDS	8526739	8526907	.	-	1	Parent=Os05t0240200-03
Chr05	irgsp1_rep	three_prime_UTR	8526487	8526738	.	-	.	Parent=Os05t0240200-03
Chr05	irgsp1_rep	mRNA	8584562	8589468	.	-	.	ID=Os05t0241000-01;Name=Os05t0241000-01;Locus_id=Os05g0241000;Note=Prefoldin domain containing protein.;Transcript_evidence=AK068369 (DDBJ%2C Best hit);ORF_evidence=B8AZV7 (UniProt);NIAS_FLcDNA=J013149N06;Expression=AK068369;TENOR=Os05t0241000-01;KEGG=Os05t0241000-01
Chr05	irgsp1_rep	five_prime_UTR	8589340	8589468	.	-	.	Parent=Os05t0241000-01
Chr05	irgsp1_rep	five_prime_UTR	8588371	8588384	.	-	.	Parent=Os05t0241000-01
Chr05	irgsp1_rep	CDS	8587878	8588370	.	-	0	Parent=Os05t0241000-01
Chr05	irgsp1_rep	CDS	8586666	8587810	.	-	2	Parent=Os05t0241000-01
Chr05	irgsp1_rep	CDS	8585796	8585960	.	-	0	Parent=Os05t0241000-01
Chr05	irgsp1_rep	CDS	8584863	8585069	.	-	0	Parent=Os05t0241000-01
Chr05	irgsp1_rep	three_prime_UTR	8584562	8584862	.	-	.	Parent=Os05t0241000-01
Chr05	irgsp1_rep	mRNA	8590929	8597015	.	+	.	ID=Os05t0241100-01;Name=Os05t0241100-01;Locus_id=Os05g0241100;Note=Similar to predicted protein.;Transcript_evidence=AK120403 (DDBJ%2C Best hit);ORF_evidence=XP_002465420.1 (RefSeq);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: ATP binding (GO:0005524);InterPro=Aminoacyl-tRNA synthetase%2C class I%2C conserved site (IPR001412),Aminoacyl-tRNA synthetase%2C class Ia (IPR002300),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Aminoacyl-tRNA synthetase%2C class I (M) (IPR015413);NIAS_FLcDNA=J013088K21;TENOR=Os05t0241100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	8590929	8591305	.	+	.	Parent=Os05t0241100-01
Chr05	irgsp1_rep	five_prime_UTR	8591448	8591513	.	+	.	Parent=Os05t0241100-01
Chr05	irgsp1_rep	five_prime_UTR	8592463	8592473	.	+	.	Parent=Os05t0241100-01
Chr05	irgsp1_rep	CDS	8592474	8593442	.	+	0	Parent=Os05t0241100-01
Chr05	irgsp1_rep	three_prime_UTR	8593443	8597015	.	+	.	Parent=Os05t0241100-01
Chr05	irgsp1_rep	mRNA	8591024	8593882	.	+	.	ID=Os05t0241100-02;Name=Os05t0241100-02;Locus_id=Os05g0241100;Note=Similar to predicted protein.;Transcript_evidence=AK065584 (DDBJ%2C Best hit);ORF_evidence=A2Q4Y9 (UniProt);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: ATP binding (GO:0005524);InterPro=Aminoacyl-tRNA synthetase%2C class I%2C conserved site (IPR001412),Aminoacyl-tRNA synthetase%2C class Ia (IPR002300),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Aminoacyl-tRNA synthetase%2C class I (M) (IPR015413);NIAS_FLcDNA=J013033A03;Expression=AK065584;TENOR=Os05t0241100-02;KEGG=Os05t0241100-02 (EC:6.1.1.4)
Chr05	irgsp1_rep	five_prime_UTR	8591024	8591305	.	+	.	Parent=Os05t0241100-02
Chr05	irgsp1_rep	five_prime_UTR	8591448	8591513	.	+	.	Parent=Os05t0241100-02
Chr05	irgsp1_rep	five_prime_UTR	8592463	8592473	.	+	.	Parent=Os05t0241100-02
Chr05	irgsp1_rep	CDS	8592474	8593442	.	+	0	Parent=Os05t0241100-02
Chr05	irgsp1_rep	three_prime_UTR	8593443	8593882	.	+	.	Parent=Os05t0241100-02
Chr05	irgsp1_rep	mRNA	8600542	8608929	.	-	.	ID=Os05t0241150-00;Name=Os05t0241150-00;Locus_id=Os05g0241150;Note=Hypothetical protein.;Transcript_evidence=tplb0053e01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0241150-00
Chr05	irgsp1_rep	five_prime_UTR	8608833	8608929	.	-	.	Parent=Os05t0241150-00
Chr05	irgsp1_rep	five_prime_UTR	8608567	8608661	.	-	.	Parent=Os05t0241150-00
Chr05	irgsp1_rep	five_prime_UTR	8608152	8608266	.	-	.	Parent=Os05t0241150-00
Chr05	irgsp1_rep	five_prime_UTR	8605975	8606060	.	-	.	Parent=Os05t0241150-00
Chr05	irgsp1_rep	five_prime_UTR	8605766	8605875	.	-	.	Parent=Os05t0241150-00
Chr05	irgsp1_rep	five_prime_UTR	8604860	8604944	.	-	.	Parent=Os05t0241150-00
Chr05	irgsp1_rep	five_prime_UTR	8604644	8604758	.	-	.	Parent=Os05t0241150-00
Chr05	irgsp1_rep	five_prime_UTR	8603231	8603333	.	-	.	Parent=Os05t0241150-00
Chr05	irgsp1_rep	five_prime_UTR	8603014	8603137	.	-	.	Parent=Os05t0241150-00
Chr05	irgsp1_rep	five_prime_UTR	8600778	8600801	.	-	.	Parent=Os05t0241150-00
Chr05	irgsp1_rep	CDS	8600542	8600777	.	-	0	Parent=Os05t0241150-00
Chr05	irgsp1_rep	mRNA	8600565	8609720	.	+	.	ID=Os05t0241200-01;Name=Os05t0241200-01;Locus_id=Os05g0241200;CGSNL Gene Symbol=TPT2;CGSNL Gene Name=TRIOSE PHOSPHATE/PHOSPHATE TRANSLOCATOR 2;Oryzabase Gene Symbol Synonym(s)=OsTPT2;Oryzabase Gene Name Synonym(s)=triose phosphate/phosphate translocator 2;Note=Similar to Phophate translocator (Fragment).;Transcript_evidence=AK059788 (DDBJ%2C Best hit);ORF_evidence=B6T5Y2 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215);InterPro=Drug/metabolite transporter (IPR000620),Tpt phosphate/phosphoenolpyruvate translocator (IPR004696),Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=006-204-D11;Oryzabase=8720;Expression=AK059788;TENOR=Os05t0241200-01;KEGG=Os05t0241200-01
Chr05	irgsp1_rep	five_prime_UTR	8600565	8600568	.	+	.	Parent=Os05t0241200-01
Chr05	irgsp1_rep	CDS	8600569	8600825	.	+	0	Parent=Os05t0241200-01
Chr05	irgsp1_rep	CDS	8602909	8602977	.	+	1	Parent=Os05t0241200-01
Chr05	irgsp1_rep	CDS	8603090	8603155	.	+	1	Parent=Os05t0241200-01
Chr05	irgsp1_rep	CDS	8603250	8603328	.	+	1	Parent=Os05t0241200-01
Chr05	irgsp1_rep	CDS	8604635	8604755	.	+	0	Parent=Os05t0241200-01
Chr05	irgsp1_rep	CDS	8604851	8604946	.	+	2	Parent=Os05t0241200-01
Chr05	irgsp1_rep	CDS	8605768	8605880	.	+	2	Parent=Os05t0241200-01
Chr05	irgsp1_rep	CDS	8605977	8606054	.	+	0	Parent=Os05t0241200-01
Chr05	irgsp1_rep	CDS	8608142	8608258	.	+	0	Parent=Os05t0241200-01
Chr05	irgsp1_rep	CDS	8608559	8608658	.	+	0	Parent=Os05t0241200-01
Chr05	irgsp1_rep	CDS	8608828	8608928	.	+	2	Parent=Os05t0241200-01
Chr05	irgsp1_rep	CDS	8609458	8609475	.	+	0	Parent=Os05t0241200-01
Chr05	irgsp1_rep	three_prime_UTR	8609476	8609720	.	+	.	Parent=Os05t0241200-01
Chr05	irgsp1_rep	mRNA	8600572	8609764	.	+	.	ID=Os05t0241200-02;Name=Os05t0241200-02;Locus_id=Os05g0241200;CGSNL Gene Symbol=TPT2;CGSNL Gene Name=TRIOSE PHOSPHATE/PHOSPHATE TRANSLOCATOR 2;Oryzabase Gene Symbol Synonym(s)=OsTPT2;Oryzabase Gene Name Synonym(s)=triose phosphate/phosphate translocator 2;Note=Hypothetical conserved gene.;Transcript_evidence=AK073395 (DDBJ%2C Best hit);ORF_evidence=B6T5Y2 (UniProt);NIAS_FLcDNA=J033044E21;Oryzabase=8720;Expression=AK073395;TENOR=Os05t0241200-02;KEGG=Os05t0241200-02
Chr05	irgsp1_rep	CDS	8600572	8600825	.	+	0	Parent=Os05t0241200-02
Chr05	irgsp1_rep	CDS	8602909	8603021	.	+	1	Parent=Os05t0241200-02
Chr05	irgsp1_rep	CDS	8603090	8603100	.	+	2	Parent=Os05t0241200-02
Chr05	irgsp1_rep	three_prime_UTR	8603101	8603155	.	+	.	Parent=Os05t0241200-02
Chr05	irgsp1_rep	three_prime_UTR	8604635	8604755	.	+	.	Parent=Os05t0241200-02
Chr05	irgsp1_rep	three_prime_UTR	8604851	8604946	.	+	.	Parent=Os05t0241200-02
Chr05	irgsp1_rep	three_prime_UTR	8605768	8605880	.	+	.	Parent=Os05t0241200-02
Chr05	irgsp1_rep	three_prime_UTR	8605977	8606054	.	+	.	Parent=Os05t0241200-02
Chr05	irgsp1_rep	three_prime_UTR	8608142	8608258	.	+	.	Parent=Os05t0241200-02
Chr05	irgsp1_rep	three_prime_UTR	8608559	8608658	.	+	.	Parent=Os05t0241200-02
Chr05	irgsp1_rep	three_prime_UTR	8608828	8608928	.	+	.	Parent=Os05t0241200-02
Chr05	irgsp1_rep	three_prime_UTR	8609458	8609764	.	+	.	Parent=Os05t0241200-02
Chr05	irgsp1_rep	mRNA	8613323	8614217	.	-	.	ID=Os05t0241300-01;Name=Os05t0241300-01;Locus_id=Os05g0241300;Note=Conserved hypothetical protein.;Transcript_evidence=AK242005 (DDBJ%2C Best hit);ORF_evidence=NP_001174293.1 (RefSeq);NIAS_FLcDNA=J075103P13;TENOR=Os05t0241300-01;KEGG=Os05t0241300-01
Chr05	irgsp1_rep	five_prime_UTR	8614171	8614217	.	-	.	Parent=Os05t0241300-01
Chr05	irgsp1_rep	CDS	8613936	8614170	.	-	0	Parent=Os05t0241300-01
Chr05	irgsp1_rep	CDS	8613535	8613560	.	-	2	Parent=Os05t0241300-01
Chr05	irgsp1_rep	three_prime_UTR	8613323	8613534	.	-	.	Parent=Os05t0241300-01
Chr05	irgsp1_rep	mRNA	8616503	8618486	.	-	.	ID=Os05t0241400-01;Name=Os05t0241400-01;Locus_id=Os05g0241400;Note=Profilin/allergen domain containing protein.;Transcript_evidence=AK107803 (DDBJ%2C Best hit);ORF_evidence=NP_567584.1 (RefSeq);GO=Biological Process: cytoskeleton organization (GO:0007010),Cellular Component: actin cytoskeleton (GO:0015629),Molecular Function: actin binding (GO:0003779);InterPro=Profilin/allergen (IPR002097);NIAS_FLcDNA=002-133-E05;Expression=AK107803;TENOR=Os05t0241400-01;KEGG=Os05t0241400-01
Chr05	irgsp1_rep	five_prime_UTR	8618408	8618486	.	-	.	Parent=Os05t0241400-01
Chr05	irgsp1_rep	CDS	8618338	8618407	.	-	0	Parent=Os05t0241400-01
Chr05	irgsp1_rep	CDS	8618184	8618253	.	-	2	Parent=Os05t0241400-01
Chr05	irgsp1_rep	CDS	8617164	8617273	.	-	1	Parent=Os05t0241400-01
Chr05	irgsp1_rep	CDS	8616938	8617048	.	-	2	Parent=Os05t0241400-01
Chr05	irgsp1_rep	CDS	8616713	8616804	.	-	2	Parent=Os05t0241400-01
Chr05	irgsp1_rep	three_prime_UTR	8616503	8616712	.	-	.	Parent=Os05t0241400-01
Chr05	irgsp1_rep	mRNA	8640728	8642246	.	+	.	ID=Os05t0242000-01;Name=Os05t0242000-01;Locus_id=Os05g0242000;Note=Protein of unknown function DUF247%2C plant family protein.;Transcript_evidence=AK107141 (DDBJ%2C Best hit);ORF_evidence=B8AZW1 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);NIAS_FLcDNA=002-124-D03;Expression=AK107141;TENOR=Os05t0242000-01;KEGG=Os05t0242000-01
Chr05	irgsp1_rep	five_prime_UTR	8640728	8640778	.	+	.	Parent=Os05t0242000-01
Chr05	irgsp1_rep	CDS	8640779	8642113	.	+	0	Parent=Os05t0242000-01
Chr05	irgsp1_rep	three_prime_UTR	8642114	8642246	.	+	.	Parent=Os05t0242000-01
Chr05	irgsp1_rep	mRNA	8666538	8669878	.	-	.	ID=Os05t0242400-00;Name=Os05t0242400-00;Locus_id=Os05g0242400;CGSNL Gene Symbol=PSAN;CGSNL Gene Name=PHOTOSYSTEM I SUBUNIT;Oryzabase Gene Symbol Synonym(s)=PsaN;Oryzabase Gene Name Synonym(s)=PSI subunit PsaN%2C photosystem I subunit PsaN;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0014p05 (Wheat FLcDNA);ORF_evidence=Q60E16 (UniProt);Oryzabase=9593;TENOR=Os05t0242400-00
Chr05	irgsp1_rep	CDS	8669661	8669878	.	-	0	Parent=Os05t0242400-00
Chr05	irgsp1_rep	CDS	8666538	8666691	.	-	1	Parent=Os05t0242400-00
Chr05	irgsp1_rep	mRNA	8676567	8679270	.	-	.	ID=Os05t0242600-01;Name=Os05t0242600-01;Locus_id=Os05g0242600;Note=Prefoldin domain containing protein.;Transcript_evidence=AK107430 (DDBJ%2C Best hit);ORF_evidence=B9FJH0 (UniProt);NIAS_FLcDNA=002-128-A06;Expression=AK107430;TENOR=Os05t0242600-01;KEGG=Os05t0242600-01
Chr05	irgsp1_rep	five_prime_UTR	8679143	8679270	.	-	.	Parent=Os05t0242600-01
Chr05	irgsp1_rep	CDS	8678863	8679142	.	-	0	Parent=Os05t0242600-01
Chr05	irgsp1_rep	CDS	8678108	8678203	.	-	2	Parent=Os05t0242600-01
Chr05	irgsp1_rep	CDS	8677332	8677447	.	-	2	Parent=Os05t0242600-01
Chr05	irgsp1_rep	CDS	8677188	8677243	.	-	0	Parent=Os05t0242600-01
Chr05	irgsp1_rep	CDS	8676988	8677059	.	-	1	Parent=Os05t0242600-01
Chr05	irgsp1_rep	CDS	8676818	8676884	.	-	1	Parent=Os05t0242600-01
Chr05	irgsp1_rep	three_prime_UTR	8676567	8676817	.	-	.	Parent=Os05t0242600-01
Chr05	irgsp1_rep	mRNA	8689448	8691503	.	-	.	ID=Os05t0243100-01;Name=Os05t0243100-01;Locus_id=Os05g0243100;Note=Similar to 50S ribosomal protein L13.;Transcript_evidence=AK242519 (DDBJ%2C Best hit);ORF_evidence=B6TQ75 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L13 (IPR005822),Ribosomal protein L13 domain (IPR023564);NIAS_FLcDNA=J080313B14;TENOR=Os05t0243100-01;KEGG=Os05t0243100-01
Chr05	irgsp1_rep	five_prime_UTR	8691318	8691503	.	-	.	Parent=Os05t0243100-01
Chr05	irgsp1_rep	CDS	8691183	8691317	.	-	0	Parent=Os05t0243100-01
Chr05	irgsp1_rep	CDS	8690712	8690783	.	-	0	Parent=Os05t0243100-01
Chr05	irgsp1_rep	CDS	8690473	8690628	.	-	0	Parent=Os05t0243100-01
Chr05	irgsp1_rep	three_prime_UTR	8690283	8690472	.	-	.	Parent=Os05t0243100-01
Chr05	irgsp1_rep	three_prime_UTR	8689448	8690191	.	-	.	Parent=Os05t0243100-01
Chr05	irgsp1_rep	mRNA	8692457	8696463	.	-	.	ID=Os05t0243200-01;Name=Os05t0243200-01;Locus_id=Os05g0243200;Oryzabase Gene Symbol Synonym(s)=orf160%2C ORF160;Note=Similar to Ribosomal protein L13.;Transcript_evidence=AK061317 (DDBJ%2C Best hit);ORF_evidence=B6TQ75 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L13 (IPR005822),Ribosomal protein L13 domain (IPR023564);NIAS_FLcDNA=006-302-D09;Oryzabase=20150;Expression=AK061317;TENOR=Os05t0243200-01;KEGG=Os05t0243200-01
Chr05	irgsp1_rep	five_prime_UTR	8696217	8696463	.	-	.	Parent=Os05t0243200-01
Chr05	irgsp1_rep	CDS	8695913	8696216	.	-	0	Parent=Os05t0243200-01
Chr05	irgsp1_rep	CDS	8693077	8693144	.	-	2	Parent=Os05t0243200-01
Chr05	irgsp1_rep	CDS	8692883	8692993	.	-	0	Parent=Os05t0243200-01
Chr05	irgsp1_rep	three_prime_UTR	8692793	8692882	.	-	.	Parent=Os05t0243200-01
Chr05	irgsp1_rep	three_prime_UTR	8692457	8692712	.	-	.	Parent=Os05t0243200-01
Chr05	irgsp1_rep	mRNA	8692486	8696356	.	-	.	ID=Os05t0243200-02;Name=Os05t0243200-02;Locus_id=Os05g0243200;Oryzabase Gene Symbol Synonym(s)=orf160%2C ORF160;Note=Similar to 50S ribosomal protein L13.;Transcript_evidence=AK066379 (DDBJ%2C Best hit);ORF_evidence=B6TQ75 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L13 (IPR005822),Ribosomal protein L13 domain (IPR023564);NIAS_FLcDNA=J013065N04;Oryzabase=20150;TENOR=Os05t0243200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	8693158	8696356	.	-	.	Parent=Os05t0243200-02
Chr05	irgsp1_rep	CDS	8693077	8693157	.	-	0	Parent=Os05t0243200-02
Chr05	irgsp1_rep	CDS	8692883	8692993	.	-	0	Parent=Os05t0243200-02
Chr05	irgsp1_rep	three_prime_UTR	8692486	8692882	.	-	.	Parent=Os05t0243200-02
Chr05	irgsp1_rep	mRNA	8697567	8704009	.	-	.	ID=Os05t0243300-01;Name=Os05t0243300-01;Locus_id=Os05g0243300;Oryzabase Gene Symbol Synonym(s)=mt rpl13%2C mt RPL13;Oryzabase Gene Name Synonym(s)=Ribosomal protein L13%2C mitochondrial ribosomal protein L13%2C mitochondrial RPL13;Note=Similar to 50S ribosomal protein L13.;Transcript_evidence=AK108395 (DDBJ%2C Best hit);ORF_evidence=B6TQ75 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L13 (IPR005822),Ribosomal protein L13%2C bacterial-type (IPR005823),Ribosomal protein L13 domain (IPR023564);NIAS_FLcDNA=002-142-F09;Oryzabase=17661;Expression=AK108395;TENOR=Os05t0243300-01;KEGG=Os05t0243300-01
Chr05	irgsp1_rep	five_prime_UTR	8703938	8704009	.	-	.	Parent=Os05t0243300-01
Chr05	irgsp1_rep	CDS	8703935	8703937	.	-	0	Parent=Os05t0243300-01
Chr05	irgsp1_rep	CDS	8700222	8700293	.	-	0	Parent=Os05t0243300-01
Chr05	irgsp1_rep	CDS	8699972	8700138	.	-	0	Parent=Os05t0243300-01
Chr05	irgsp1_rep	CDS	8699778	8699889	.	-	1	Parent=Os05t0243300-01
Chr05	irgsp1_rep	CDS	8697698	8697919	.	-	0	Parent=Os05t0243300-01
Chr05	irgsp1_rep	three_prime_UTR	8697567	8697697	.	-	.	Parent=Os05t0243300-01
Chr05	irgsp1_rep	mRNA	8769569	8774386	.	-	.	ID=Os05t0244500-01;Name=Os05t0244500-01;Locus_id=Os05g0244500;Note=Glycoside hydrolase%2C family 5 protein.;Transcript_evidence=AK064349 (DDBJ%2C Best hit);ORF_evidence=NP_001150774.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 5 (IPR001547),Actin cross-linking (IPR008999),FRG1-like (IPR010414),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 5%2C conserved site (IPR018087);NIAS_FLcDNA=002-108-A03;Expression=AK064349;TENOR=Os05t0244500-01;KEGG=Os05t0244500-01 (EC:3.2.1.58)
Chr05	irgsp1_rep	five_prime_UTR	8774346	8774386	.	-	.	Parent=Os05t0244500-01
Chr05	irgsp1_rep	CDS	8774124	8774345	.	-	0	Parent=Os05t0244500-01
Chr05	irgsp1_rep	CDS	8773871	8773999	.	-	0	Parent=Os05t0244500-01
Chr05	irgsp1_rep	CDS	8773555	8773749	.	-	0	Parent=Os05t0244500-01
Chr05	irgsp1_rep	CDS	8772498	8772662	.	-	0	Parent=Os05t0244500-01
Chr05	irgsp1_rep	CDS	8771364	8771533	.	-	0	Parent=Os05t0244500-01
Chr05	irgsp1_rep	CDS	8771034	8771189	.	-	1	Parent=Os05t0244500-01
Chr05	irgsp1_rep	CDS	8770124	8770476	.	-	1	Parent=Os05t0244500-01
Chr05	irgsp1_rep	CDS	8769787	8769974	.	-	2	Parent=Os05t0244500-01
Chr05	irgsp1_rep	three_prime_UTR	8769569	8769786	.	-	.	Parent=Os05t0244500-01
Chr05	irgsp1_rep	mRNA	8766745	8769922	.	-	.	ID=Os05t0244500-02;Name=Os05t0244500-02;Locus_id=Os05g0244500;Note=Similar to cellulase containing protein.;Transcript_evidence=AK063757 (DDBJ%2C Best hit);ORF_evidence=NP_001150774.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781);NIAS_FLcDNA=001-121-A08;Expression=AK063757;TENOR=Os05t0244500-02;KEGG=Os05t0244500-02 (EC:3.2.1.58)
Chr05	irgsp1_rep	five_prime_UTR	8769922	8769922	.	-	.	Parent=Os05t0244500-02
Chr05	irgsp1_rep	CDS	8769787	8769921	.	-	0	Parent=Os05t0244500-02
Chr05	irgsp1_rep	three_prime_UTR	8769753	8769786	.	-	.	Parent=Os05t0244500-02
Chr05	irgsp1_rep	three_prime_UTR	8766745	8767069	.	-	.	Parent=Os05t0244500-02
Chr05	irgsp1_rep	mRNA	8777998	8782541	.	-	.	ID=Os05t0244600-01;Name=Os05t0244600-01;Locus_id=Os05g0244600;Note=Similar to OB-fold nucleic acid binding domain containing protein.;Transcript_evidence=AK073979 (DDBJ%2C Best hit);ORF_evidence=NP_001146919.1 (RefSeq);InterPro=Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=J033077H09;TENOR=Os05t0244600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	8782450	8782541	.	-	.	Parent=Os05t0244600-01
Chr05	irgsp1_rep	CDS	8782200	8782449	.	-	0	Parent=Os05t0244600-01
Chr05	irgsp1_rep	CDS	8778146	8778333	.	-	2	Parent=Os05t0244600-01
Chr05	irgsp1_rep	three_prime_UTR	8777998	8778145	.	-	.	Parent=Os05t0244600-01
Chr05	irgsp1_rep	mRNA	8785538	8787555	.	-	.	ID=Os05t0244700-01;Name=Os05t0244700-01;Locus_id=Os05g0244700;Oryzabase Gene Symbol Synonym(s)=OsAT-IV;Oryzabase Gene Name Synonym(s)=aminotransferase%2C class IV family protein;Note=Aminotransferase%2C class IV family protein.;Transcript_evidence=AK073635 (DDBJ%2C Best hit);ORF_evidence=NP_200593.2 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Aminotransferase%2C class IV (IPR001544);NIAS_FLcDNA=J033051I12;Oryzabase=12483;Expression=AK073635;TENOR=Os05t0244700-01;KEGG=Os05t0244700-01 (EC:2.6.1.42)
Chr05	irgsp1_rep	five_prime_UTR	8787468	8787555	.	-	.	Parent=Os05t0244700-01
Chr05	irgsp1_rep	CDS	8787461	8787467	.	-	0	Parent=Os05t0244700-01
Chr05	irgsp1_rep	CDS	8787304	8787347	.	-	2	Parent=Os05t0244700-01
Chr05	irgsp1_rep	CDS	8786979	8787154	.	-	0	Parent=Os05t0244700-01
Chr05	irgsp1_rep	CDS	8786130	8786824	.	-	1	Parent=Os05t0244700-01
Chr05	irgsp1_rep	CDS	8785627	8785727	.	-	2	Parent=Os05t0244700-01
Chr05	irgsp1_rep	three_prime_UTR	8785538	8785626	.	-	.	Parent=Os05t0244700-01
Chr05	irgsp1_rep	mRNA	8785502	8787523	.	-	.	ID=Os05t0244700-02;Name=Os05t0244700-02;Locus_id=Os05g0244700;Oryzabase Gene Symbol Synonym(s)=OsAT-IV;Oryzabase Gene Name Synonym(s)=aminotransferase%2C class IV family protein;Note=Aminotransferase%2C class IV family protein.;Transcript_evidence=AK104978 (DDBJ%2C Best hit);ORF_evidence=NP_200593.2 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Aminotransferase%2C class IV (IPR001544);NIAS_FLcDNA=001-124-C03;Oryzabase=12483;Expression=AK104978;TENOR=Os05t0244700-02;KEGG=Os05t0244700-02 (EC:2.6.1.42)
Chr05	irgsp1_rep	five_prime_UTR	8787468	8787523	.	-	.	Parent=Os05t0244700-02
Chr05	irgsp1_rep	CDS	8787461	8787467	.	-	0	Parent=Os05t0244700-02
Chr05	irgsp1_rep	CDS	8787304	8787347	.	-	2	Parent=Os05t0244700-02
Chr05	irgsp1_rep	CDS	8786979	8787154	.	-	0	Parent=Os05t0244700-02
Chr05	irgsp1_rep	CDS	8786130	8786824	.	-	1	Parent=Os05t0244700-02
Chr05	irgsp1_rep	CDS	8785627	8785727	.	-	2	Parent=Os05t0244700-02
Chr05	irgsp1_rep	three_prime_UTR	8785502	8785626	.	-	.	Parent=Os05t0244700-02
Chr05	irgsp1_rep	mRNA	8839090	8839504	.	-	.	ID=Os05t0244800-00;Name=Os05t0244800-00;Locus_id=Os05g0244800;Note=Hypothetical protein.;Transcript_evidence=EU968626 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0244800-00
Chr05	irgsp1_rep	five_prime_UTR	8839476	8839504	.	-	.	Parent=Os05t0244800-00
Chr05	irgsp1_rep	CDS	8839090	8839475	.	-	0	Parent=Os05t0244800-00
Chr05	irgsp1_rep	mRNA	8839127	8839773	.	+	.	ID=Os05t0244900-00;Name=Os05t0244900-00;Locus_id=Os05g0244900;Note=Transcription elongation factor%2C TFIIS/CRSP70%2C N-terminal%2C sub-type domain containing protein.;Transcript_evidence=EU959826 (DDBJ);ORF_evidence=Q5W702 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Transcription elongation factor%2C TFIIS/CRSP70%2C N-terminal%2C sub-type (IPR003617),Transcription factor IIS%2C N-terminal (IPR017923);TENOR=Os05t0244900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	8839127	8839134	.	+	.	Parent=Os05t0244900-00
Chr05	irgsp1_rep	CDS	8839135	8839773	.	+	0	Parent=Os05t0244900-00
Chr05	irgsp1_rep	mRNA	8846666	8848604	.	-	.	ID=Os05t0245300-01;Name=Os05t0245300-01;Locus_id=Os05g0245300;CGSNL Gene Symbol=BLE3;CGSNL Gene Name=BRASSINOLIDE ENHANCED GENE 3;Oryzabase Gene Symbol Synonym(s)=OsBLE3;Oryzabase Gene Name Synonym(s)=brassinolide-enhanced 3%2C BL-enhanced 3%2C UPF0497 membrane protein BLE3%2C Protein brassinolide-enhanced 3%2C Protein BL-enhanced 3;Note=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup domain containing protein.;Transcript_evidence=AK243380 (DDBJ%2C Best hit);ORF_evidence=Q84UT5 (UniProt);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup (IPR006459),Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);NIAS_FLcDNA=J100063B05;Oryzabase=7273;TENOR=Os05t0245300-01;KEGG=Os05t0245300-01
Chr05	irgsp1_rep	five_prime_UTR	8848521	8848604	.	-	.	Parent=Os05t0245300-01
Chr05	irgsp1_rep	CDS	8848366	8848520	.	-	0	Parent=Os05t0245300-01
Chr05	irgsp1_rep	CDS	8847965	8848067	.	-	1	Parent=Os05t0245300-01
Chr05	irgsp1_rep	CDS	8846827	8847057	.	-	0	Parent=Os05t0245300-01
Chr05	irgsp1_rep	three_prime_UTR	8846666	8846826	.	-	.	Parent=Os05t0245300-01
Chr05	irgsp1_rep	mRNA	8861950	8864450	.	+	.	ID=Os05t0245700-01;Name=Os05t0245700-01;Locus_id=Os05g0245700;CGSNL Gene Symbol=MIR1425;CGSNL Gene Name=MICRORNA1425;Oryzabase Gene Symbol Synonym(s)=OsmiR1425%2C miR1425%2C osa-miR1425%2C osa-MIR1425%2C osa-miR1425-3p%2C osa-miR1425-5p;Oryzabase Gene Name Synonym(s)=microRNA1425%2C osa-miRNA1425;Note=Hypothetical protein.;Transcript_evidence=AK101146 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033026P04;Oryzabase=8529;Expression=AK101146;TENOR=Os05t0245700-01;KEGG=Os05t0245700-01
Chr05	irgsp1_rep	five_prime_UTR	8861950	8863226	.	+	.	Parent=Os05t0245700-01
Chr05	irgsp1_rep	CDS	8863227	8863463	.	+	0	Parent=Os05t0245700-01
Chr05	irgsp1_rep	three_prime_UTR	8863464	8863567	.	+	.	Parent=Os05t0245700-01
Chr05	irgsp1_rep	three_prime_UTR	8863677	8864450	.	+	.	Parent=Os05t0245700-01
Chr05	irgsp1_rep	mRNA	8869613	8869900	.	+	.	ID=Os05t0246200-00;Name=Os05t0246200-00;Locus_id=Os05g0246200;Note=Similar to UDP-glycosyltransferase UGT710F3.;Transcript_evidence=ab initio prediction;ORF_evidence=Q69U83 (UniProt);TENOR=Os05t0246200-00;KEGG=Os05t0246200-00
Chr05	irgsp1_rep	CDS	8869613	8869900	.	+	0	Parent=Os05t0246200-00
Chr05	irgsp1_rep	mRNA	8870363	8871941	.	-	.	ID=Os05t0246300-01;Name=Os05t0246300-01;Locus_id=Os05g0246300;Note=Barwin-related endoglucanase domain containing protein.;Transcript_evidence=AK101313 (DDBJ%2C Best hit);ORF_evidence=Q5W6Z9 (UniProt);GO=Biological Process: sexual reproduction (GO:0019953),Cellular Component: extracellular region (GO:0005576);InterPro=Major pollen allergen Lol pI (IPR005795),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);NIAS_FLcDNA=J033034A12;Expression=AK101313;TENOR=Os05t0246300-01;KEGG=Os05t0246300-01
Chr05	irgsp1_rep	five_prime_UTR	8871848	8871941	.	-	.	Parent=Os05t0246300-01
Chr05	irgsp1_rep	CDS	8871685	8871847	.	-	0	Parent=Os05t0246300-01
Chr05	irgsp1_rep	CDS	8871456	8871568	.	-	2	Parent=Os05t0246300-01
Chr05	irgsp1_rep	CDS	8871164	8871357	.	-	0	Parent=Os05t0246300-01
Chr05	irgsp1_rep	CDS	8870719	8871043	.	-	1	Parent=Os05t0246300-01
Chr05	irgsp1_rep	three_prime_UTR	8870363	8870718	.	-	.	Parent=Os05t0246300-01
Chr05	irgsp1_rep	mRNA	8870703	8871068	.	+	.	ID=Os05t0246450-00;Name=Os05t0246450-00;Locus_id=Os05g0246450;Note=Hypothetical protein.;Transcript_evidence=EU947703 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0246450-00
Chr05	irgsp1_rep	five_prime_UTR	8870703	8870703	.	+	.	Parent=Os05t0246450-00
Chr05	irgsp1_rep	CDS	8870704	8871068	.	+	0	Parent=Os05t0246450-00
Chr05	irgsp1_rep	mRNA	8879120	8885248	.	+	.	ID=Os05t0246600-01;Name=Os05t0246600-01;Locus_id=Os05g0246600;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=AK240727 (DDBJ%2C Best hit);ORF_evidence=Q5W6Z8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Malectin-like carbohydrate-binding domain (IPR024788);NIAS_FLcDNA=J043029C03;TENOR=Os05t0246600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	8879120	8879414	.	+	.	Parent=Os05t0246600-01
Chr05	irgsp1_rep	CDS	8879415	8879438	.	+	0	Parent=Os05t0246600-01
Chr05	irgsp1_rep	CDS	8879961	8880027	.	+	0	Parent=Os05t0246600-01
Chr05	irgsp1_rep	CDS	8880104	8881159	.	+	2	Parent=Os05t0246600-01
Chr05	irgsp1_rep	CDS	8881435	8881597	.	+	2	Parent=Os05t0246600-01
Chr05	irgsp1_rep	CDS	8881788	8881859	.	+	1	Parent=Os05t0246600-01
Chr05	irgsp1_rep	CDS	8882441	8882512	.	+	1	Parent=Os05t0246600-01
Chr05	irgsp1_rep	CDS	8882646	8882790	.	+	1	Parent=Os05t0246600-01
Chr05	irgsp1_rep	three_prime_UTR	8882791	8883528	.	+	.	Parent=Os05t0246600-01
Chr05	irgsp1_rep	three_prime_UTR	8883642	8883768	.	+	.	Parent=Os05t0246600-01
Chr05	irgsp1_rep	three_prime_UTR	8884158	8884229	.	+	.	Parent=Os05t0246600-01
Chr05	irgsp1_rep	three_prime_UTR	8884349	8884541	.	+	.	Parent=Os05t0246600-01
Chr05	irgsp1_rep	three_prime_UTR	8884663	8885248	.	+	.	Parent=Os05t0246600-01
Chr05	irgsp1_rep	mRNA	8902501	8903789	.	-	.	ID=Os05t0247100-01;Name=Os05t0247100-01;Locus_id=Os05g0247100;RAP-DB Gene Symbol Synonym(s)=DIP3%2C XIP%2C OsHI-XIP;RAP-DB Gene Name Synonym(s)=drought-induced protein 3%2C Xylanase inhibitor protein 2;Oryzabase Gene Symbol Synonym(s)=DIP3%2C XIP%2C OsHI-XIP%2C OsXIP2%2C XIP2;Oryzabase Gene Name Synonym(s)=drought-induced protein 3%2C Xylanase inhibitor protein 2;Note=Similar to Glycosyl hydrolases family 18.;Transcript_evidence=AK065866 (DDBJ%2C Best hit);ORF_evidence=Q53NM2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J013045O11;Manual Curation=January 20%2C 2017;Oryzabase=17792;TENOR=Os05t0247100-01
Chr05	irgsp1_rep	five_prime_UTR	8903721	8903789	.	-	.	Parent=Os05t0247100-01
Chr05	irgsp1_rep	CDS	8903239	8903720	.	-	0	Parent=Os05t0247100-01
Chr05	irgsp1_rep	CDS	8902990	8903146	.	-	1	Parent=Os05t0247100-01
Chr05	irgsp1_rep	three_prime_UTR	8902501	8902989	.	-	.	Parent=Os05t0247100-01
Chr05	irgsp1_rep	mRNA	8902591	8903789	.	-	.	ID=Os05t0247100-02;Name=Os05t0247100-02;Locus_id=Os05g0247100;RAP-DB Gene Symbol Synonym(s)=DIP3%2C XIP%2C OsHI-XIP;RAP-DB Gene Name Synonym(s)=drought-induced protein 3%2C Xylanase inhibitor protein 2;Oryzabase Gene Symbol Synonym(s)=DIP3%2C XIP%2C OsHI-XIP%2C OsXIP2%2C XIP2;Oryzabase Gene Name Synonym(s)=drought-induced protein 3%2C Xylanase inhibitor protein 2;Note=Chitinase III protein%2C Xylanase inhibitor%2C Regulation of abiotic stress response%2C Resistance to herbivores;Transcript_evidence=AK062114,JQ218437;ORF_evidence=Q5WMX0;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase superfamily (IPR017853),Glycoside hydrolase%2C catalytic domain (IPR013781),Glycoside hydrolase family 18%2C catalytic domain (IPR001223);NIAS_FLcDNA=001-045-C02;Manual Curation=January 20%2C 2017;Literature_PMID=24391034,DOI: 10.1007/s11105-013-0661-5;Oryzabase=17792;Expression=AK062114;TENOR=Os05t0247100-02;KEGG=Os05t0247100-02 (EC:3.2.1.14)
Chr05	irgsp1_rep	five_prime_UTR	8903721	8903789	.	-	.	Parent=Os05t0247100-02
Chr05	irgsp1_rep	CDS	8902827	8903720	.	-	0	Parent=Os05t0247100-02
Chr05	irgsp1_rep	three_prime_UTR	8902591	8902826	.	-	.	Parent=Os05t0247100-02
Chr05	irgsp1_rep	mRNA	8935703	8937728	.	-	.	ID=Os05t0247400-01;Name=Os05t0247400-01;Locus_id=Os05g0247400;Note=Conserved hypothetical protein.;Transcript_evidence=AK120118 (DDBJ%2C Best hit);ORF_evidence=Q5WMW7 (UniProt);NIAS_FLcDNA=J013025N10;TENOR=Os05t0247400-01
Chr05	irgsp1_rep	five_prime_UTR	8936728	8937728	.	-	.	Parent=Os05t0247400-01
Chr05	irgsp1_rep	CDS	8936506	8936727	.	-	0	Parent=Os05t0247400-01
Chr05	irgsp1_rep	three_prime_UTR	8935703	8936505	.	-	.	Parent=Os05t0247400-01
Chr05	irgsp1_rep	mRNA	8959416	8960566	.	+	.	ID=Os05t0247800-01;Name=Os05t0247800-01;Locus_id=Os05g0247800;RAP-DB Gene Symbol Synonym(s)=OsXIP;RAP-DB Gene Name Synonym(s)=xylanase inhibitor protein;Oryzabase Gene Symbol Synonym(s)=OsXIP%2C XIP;Oryzabase Gene Name Synonym(s)=xylanase inhibitor protein;Note=Xylanase inhibitor protein%2C Defence response;Transcript_evidence=AK073843;ORF_evidence=Q5WMW5;GO=Biological Process: carbohydrate metabolic process (GO:0005975);InterPro=Glycoside hydrolase superfamily (IPR017853),Glycoside hydrolase family 18%2C catalytic domain (IPR001223);NIAS_FLcDNA=J033068H05;Manual Curation=November 6%2C 2019;Literature_PMID=28270131,17379695;Oryzabase=11728;Expression=AK073843;TENOR=Os05t0247800-01;KEGG=Os05t0247800-01
Chr05	irgsp1_rep	five_prime_UTR	8959416	8959467	.	+	.	Parent=Os05t0247800-01
Chr05	irgsp1_rep	CDS	8959468	8960349	.	+	0	Parent=Os05t0247800-01
Chr05	irgsp1_rep	three_prime_UTR	8960350	8960566	.	+	.	Parent=Os05t0247800-01
Chr05	irgsp1_rep	mRNA	8966122	8973308	.	-	.	ID=Os05t0247900-01;Name=Os05t0247900-01;Locus_id=Os05g0247900;Oryzabase Gene Symbol Synonym(s)=CSB;Note=DEAD-like helicase%2C N-terminal domain containing protein.;Transcript_evidence=AK071717 (DDBJ%2C Best hit);ORF_evidence=XP_002328055.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524);InterPro=SNF2-related (IPR000330),Helicase%2C C-terminal (IPR001650),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J023109O07;Oryzabase=21269;Expression=AK071717;TENOR=Os05t0247900-01;KEGG=Os05t0247900-01
Chr05	irgsp1_rep	five_prime_UTR	8973296	8973308	.	-	.	Parent=Os05t0247900-01
Chr05	irgsp1_rep	CDS	8972927	8973295	.	-	0	Parent=Os05t0247900-01
Chr05	irgsp1_rep	CDS	8972345	8972451	.	-	0	Parent=Os05t0247900-01
Chr05	irgsp1_rep	CDS	8970554	8971469	.	-	1	Parent=Os05t0247900-01
Chr05	irgsp1_rep	CDS	8970234	8970481	.	-	0	Parent=Os05t0247900-01
Chr05	irgsp1_rep	CDS	8969531	8969657	.	-	1	Parent=Os05t0247900-01
Chr05	irgsp1_rep	CDS	8969166	8969441	.	-	0	Parent=Os05t0247900-01
Chr05	irgsp1_rep	CDS	8968017	8968251	.	-	0	Parent=Os05t0247900-01
Chr05	irgsp1_rep	CDS	8966681	8966973	.	-	2	Parent=Os05t0247900-01
Chr05	irgsp1_rep	three_prime_UTR	8966122	8966680	.	-	.	Parent=Os05t0247900-01
Chr05	irgsp1_rep	mRNA	8981788	8982953	.	+	.	ID=Os05t0248200-01;Name=Os05t0248200-01;Locus_id=Os05g0248200;Note=Glycoside hydrolase%2C family 18 protein.;Transcript_evidence=AK241114 (DDBJ%2C Best hit);ORF_evidence=Q53NL5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 18%2C catalytic domain (IPR001223),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J065093C08;TENOR=Os05t0248200-01;KEGG=Os05t0248200-01
Chr05	irgsp1_rep	five_prime_UTR	8981788	8981848	.	+	.	Parent=Os05t0248200-01
Chr05	irgsp1_rep	CDS	8981849	8982742	.	+	0	Parent=Os05t0248200-01
Chr05	irgsp1_rep	three_prime_UTR	8982743	8982953	.	+	.	Parent=Os05t0248200-01
Chr05	irgsp1_rep	mRNA	8991943	8998182	.	+	.	ID=Os05t0248301-01;Name=Os05t0248301-01;Locus_id=Os05g0248301;Note=Hypothetical gene.;Transcript_evidence=AK242752 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090050J10;TENOR=Os05t0248301-01;KEGG=Os05t0248301-01
Chr05	irgsp1_rep	five_prime_UTR	8991943	8991944	.	+	.	Parent=Os05t0248301-01
Chr05	irgsp1_rep	CDS	8991945	8992169	.	+	0	Parent=Os05t0248301-01
Chr05	irgsp1_rep	three_prime_UTR	8992170	8992704	.	+	.	Parent=Os05t0248301-01
Chr05	irgsp1_rep	three_prime_UTR	8994060	8994137	.	+	.	Parent=Os05t0248301-01
Chr05	irgsp1_rep	three_prime_UTR	8995268	8998182	.	+	.	Parent=Os05t0248301-01
Chr05	irgsp1_rep	mRNA	9060597	9062768	.	-	.	ID=Os05t0249100-01;Name=Os05t0249100-01;Locus_id=Os05g0249100;Note=Conserved hypothetical protein.;Transcript_evidence=AK064291 (DDBJ%2C Best hit);ORF_evidence=B8B051 (UniProt);NIAS_FLcDNA=002-105-H06;Expression=AK064291;TENOR=Os05t0249100-01;KEGG=Os05t0249100-01
Chr05	irgsp1_rep	five_prime_UTR	9062493	9062768	.	-	.	Parent=Os05t0249100-01
Chr05	irgsp1_rep	CDS	9062465	9062492	.	-	0	Parent=Os05t0249100-01
Chr05	irgsp1_rep	CDS	9061936	9062309	.	-	2	Parent=Os05t0249100-01
Chr05	irgsp1_rep	three_prime_UTR	9061742	9061935	.	-	.	Parent=Os05t0249100-01
Chr05	irgsp1_rep	three_prime_UTR	9060597	9061652	.	-	.	Parent=Os05t0249100-01
Chr05	irgsp1_rep	mRNA	9061309	9062758	.	-	.	ID=Os05t0249100-02;Name=Os05t0249100-02;Locus_id=Os05g0249100;Note=Hypothetical conserved gene.;Transcript_evidence=AK103049 (DDBJ%2C Best hit);ORF_evidence=Q60EK7 (UniProt);NIAS_FLcDNA=J033117G22;Expression=AK103049;TENOR=Os05t0249100-02;KEGG=Os05t0249100-02
Chr05	irgsp1_rep	five_prime_UTR	9062335	9062758	.	-	.	Parent=Os05t0249100-02
Chr05	irgsp1_rep	CDS	9061936	9062334	.	-	0	Parent=Os05t0249100-02
Chr05	irgsp1_rep	three_prime_UTR	9061309	9061935	.	-	.	Parent=Os05t0249100-02
Chr05	irgsp1_rep	mRNA	9074953	9082011	.	+	.	ID=Os05t0249500-01;Name=Os05t0249500-01;Locus_id=Os05g0249500;Note=Conserved hypothetical protein.;Transcript_evidence=AK108083 (DDBJ%2C Best hit);ORF_evidence=NP_001176134.1 (RefSeq);NIAS_FLcDNA=002-138-H03;Expression=AK108083;TENOR=Os05t0249500-01;KEGG=Os05t0249500-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	9074953	9075125	.	+	.	Parent=Os05t0249500-01
Chr05	irgsp1_rep	CDS	9075126	9075417	.	+	0	Parent=Os05t0249500-01
Chr05	irgsp1_rep	CDS	9075513	9075601	.	+	2	Parent=Os05t0249500-01
Chr05	irgsp1_rep	CDS	9077431	9077442	.	+	0	Parent=Os05t0249500-01
Chr05	irgsp1_rep	three_prime_UTR	9077443	9077484	.	+	.	Parent=Os05t0249500-01
Chr05	irgsp1_rep	three_prime_UTR	9078826	9078894	.	+	.	Parent=Os05t0249500-01
Chr05	irgsp1_rep	three_prime_UTR	9081168	9081406	.	+	.	Parent=Os05t0249500-01
Chr05	irgsp1_rep	three_prime_UTR	9081492	9082011	.	+	.	Parent=Os05t0249500-01
Chr05	irgsp1_rep	mRNA	9103140	9104753	.	-	.	ID=Os05t0249800-00;Name=Os05t0249800-00;Locus_id=Os05g0249800;Note=Domain of unknown function DUF1618 domain containing protein.;Transcript_evidence=tplb0019i13 (Wheat FLcDNA);ORF_evidence=NP_001174299.1 (RefSeq);InterPro=Domain of unknown function DUF1618 (IPR011676);TENOR=Os05t0249800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	9103140	9104753	.	-	0	Parent=Os05t0249800-00
Chr05	irgsp1_rep	mRNA	9128120	9129772	.	-	.	ID=Os05t0250000-00;Name=Os05t0250000-00;Locus_id=Os05g0250000;Note=Domain of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK377023 (DDBJ);ORF_evidence=B9FJN4 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);TENOR=Os05t0250000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	9129723	9129772	.	-	.	Parent=Os05t0250000-00
Chr05	irgsp1_rep	CDS	9128507	9129722	.	-	0	Parent=Os05t0250000-00
Chr05	irgsp1_rep	CDS	9128142	9128227	.	-	2	Parent=Os05t0250000-00
Chr05	irgsp1_rep	three_prime_UTR	9128120	9128141	.	-	.	Parent=Os05t0250000-00
Chr05	irgsp1_rep	mRNA	9134551	9137621	.	-	.	ID=Os05t0250200-00;Name=Os05t0250200-00;Locus_id=Os05g0250200;Note=Hypothetical conserved gene.;Transcript_evidence=AK330366 (DDBJ);ORF_evidence=B8B052 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);TENOR=Os05t0250200-00;KEGG=Os05t0250200-00
Chr05	irgsp1_rep	CDS	9136304	9137621	.	-	0	Parent=Os05t0250200-00
Chr05	irgsp1_rep	CDS	9134584	9134666	.	-	2	Parent=Os05t0250200-00
Chr05	irgsp1_rep	three_prime_UTR	9134551	9134583	.	-	.	Parent=Os05t0250200-00
Chr05	irgsp1_rep	mRNA	9137917	9143486	.	+	.	ID=Os05t0250500-00;Name=Os05t0250500-00;Locus_id=Os05g0250500;Note=Similar to selT/selW/selH selenoprotein domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001149449.1 (RefSeq);InterPro=Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os05t0250500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	9137917	9138320	.	+	0	Parent=Os05t0250500-00
Chr05	irgsp1_rep	CDS	9138843	9138978	.	+	1	Parent=Os05t0250500-00
Chr05	irgsp1_rep	CDS	9141887	9141984	.	+	0	Parent=Os05t0250500-00
Chr05	irgsp1_rep	CDS	9142856	9142952	.	+	1	Parent=Os05t0250500-00
Chr05	irgsp1_rep	CDS	9143075	9143134	.	+	0	Parent=Os05t0250500-00
Chr05	irgsp1_rep	CDS	9143415	9143486	.	+	0	Parent=Os05t0250500-00
Chr05	irgsp1_rep	mRNA	9144599	9147928	.	-	.	ID=Os05t0250600-00;Name=Os05t0250600-00;Locus_id=Os05g0250600;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=AK334711 (DDBJ);ORF_evidence=Q53NN7 (UniProt);Oryzabase=20242;TENOR=Os05t0250600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	9147651	9147928	.	-	.	Parent=Os05t0250600-00
Chr05	irgsp1_rep	CDS	9147072	9147650	.	-	0	Parent=Os05t0250600-00
Chr05	irgsp1_rep	three_prime_UTR	9146888	9147071	.	-	.	Parent=Os05t0250600-00
Chr05	irgsp1_rep	three_prime_UTR	9144599	9146776	.	-	.	Parent=Os05t0250600-00
Chr05	irgsp1_rep	mRNA	9151522	9154993	.	-	.	ID=Os05t0250700-00;Name=Os05t0250700-00;Locus_id=Os05g0250700;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=AK335771 (DDBJ);ORF_evidence=Q53NN7 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: protein binding (GO:0005515),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),Leucine-rich repeat (IPR001611),NB-ARC (IPR002182);Oryzabase=20243;TENOR=Os05t0250700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	9154981	9154993	.	-	.	Parent=Os05t0250700-00
Chr05	irgsp1_rep	CDS	9153925	9154980	.	-	0	Parent=Os05t0250700-00
Chr05	irgsp1_rep	CDS	9152644	9153675	.	-	0	Parent=Os05t0250700-00
Chr05	irgsp1_rep	three_prime_UTR	9151522	9152643	.	-	.	Parent=Os05t0250700-00
Chr05	irgsp1_rep	mRNA	9153920	9154998	.	+	.	ID=Os05t0250866-00;Name=Os05t0250866-00;Locus_id=Os05g0250866;Note=Hypothetical protein.;Transcript_evidence=EU946478 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0250866-00
Chr05	irgsp1_rep	five_prime_UTR	9153920	9153988	.	+	.	Parent=Os05t0250866-00
Chr05	irgsp1_rep	CDS	9153989	9154537	.	+	0	Parent=Os05t0250866-00
Chr05	irgsp1_rep	three_prime_UTR	9154538	9154998	.	+	.	Parent=Os05t0250866-00
Chr05	irgsp1_rep	mRNA	9179179	9179730	.	-	.	ID=Os05t0251200-00;Name=Os05t0251200-00;Locus_id=Os05g0251200;Note=Domain of unknown function DUF1618 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001174301.1 (RefSeq);InterPro=Domain of unknown function DUF1618 (IPR011676);TENOR=Os05t0251200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	9179179	9179730	.	-	0	Parent=Os05t0251200-00
Chr05	irgsp1_rep	mRNA	9188371	9192390	.	+	.	ID=Os05t0251400-01;Name=Os05t0251400-01;Locus_id=Os05g0251400;RAP-DB Gene Symbol Synonym(s)=OsBVF1%2C P31<sup>comet</sup>;RAP-DB Gene Name Synonym(s)=Bivalent Formation 1;Oryzabase Gene Symbol Synonym(s)=P31comet%2C OsBVF1%2C BVF1;Oryzabase Gene Name Synonym(s)=Bivalent Formation 1;Note=A member of the synaptonemal complex (SC)%2C OmpH/coiled-coil motif-containing protein%2C Regulation of meiotic double-strand break (DSB) formation and SC assembly%2C Meiotic recombination;Transcript_evidence=AK103883;ORF_evidence=Q6AVD4;NIAS_FLcDNA=J033150A11;Manual Curation=April 19%2C 2017;Literature_PMID=28369589,27601671;Oryzabase=21411;Expression=AK103883;TENOR=Os05t0251400-01;KEGG=Os05t0251400-01
Chr05	irgsp1_rep	five_prime_UTR	9188371	9188378	.	+	.	Parent=Os05t0251400-01
Chr05	irgsp1_rep	CDS	9188379	9188554	.	+	0	Parent=Os05t0251400-01
Chr05	irgsp1_rep	CDS	9189926	9189974	.	+	1	Parent=Os05t0251400-01
Chr05	irgsp1_rep	CDS	9190064	9190372	.	+	0	Parent=Os05t0251400-01
Chr05	irgsp1_rep	CDS	9190755	9190803	.	+	0	Parent=Os05t0251400-01
Chr05	irgsp1_rep	CDS	9191116	9191210	.	+	2	Parent=Os05t0251400-01
Chr05	irgsp1_rep	CDS	9191317	9191441	.	+	0	Parent=Os05t0251400-01
Chr05	irgsp1_rep	CDS	9192087	9192144	.	+	1	Parent=Os05t0251400-01
Chr05	irgsp1_rep	three_prime_UTR	9192145	9192390	.	+	.	Parent=Os05t0251400-01
Chr05	irgsp1_rep	mRNA	9195027	9198314	.	+	.	ID=Os05t0251500-01;Name=Os05t0251500-01;Locus_id=Os05g0251500;Note=Similar to Similarities with spP29295 Saccharomyces cerevisiae YPL204w HRR25 casein kinase I.;Transcript_evidence=AK058649 (DDBJ%2C Best hit);ORF_evidence=B6SPS1 (UniProt);InterPro=Protein of unknown function DUF1242 (IPR009653);NIAS_FLcDNA=001-018-E12;Expression=AK058649;TENOR=Os05t0251500-01;KEGG=Os05t0251500-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	9195027	9195195	.	+	.	Parent=Os05t0251500-01
Chr05	irgsp1_rep	CDS	9195196	9195198	.	+	0	Parent=Os05t0251500-01
Chr05	irgsp1_rep	CDS	9195306	9195412	.	+	0	Parent=Os05t0251500-01
Chr05	irgsp1_rep	CDS	9196107	9196141	.	+	1	Parent=Os05t0251500-01
Chr05	irgsp1_rep	CDS	9197981	9198048	.	+	2	Parent=Os05t0251500-01
Chr05	irgsp1_rep	three_prime_UTR	9198049	9198314	.	+	.	Parent=Os05t0251500-01
Chr05	irgsp1_rep	mRNA	9216995	9222982	.	+	.	ID=Os05t0251700-00;Name=Os05t0251700-00;Locus_id=Os05g0251700;Note=Hypothetical protein.;Transcript_evidence=tplb0036f21 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0251700-00
Chr05	irgsp1_rep	five_prime_UTR	9216995	9218111	.	+	.	Parent=Os05t0251700-00
Chr05	irgsp1_rep	five_prime_UTR	9219030	9219285	.	+	.	Parent=Os05t0251700-00
Chr05	irgsp1_rep	five_prime_UTR	9219894	9219977	.	+	.	Parent=Os05t0251700-00
Chr05	irgsp1_rep	five_prime_UTR	9220071	9220171	.	+	.	Parent=Os05t0251700-00
Chr05	irgsp1_rep	five_prime_UTR	9220300	9220466	.	+	.	Parent=Os05t0251700-00
Chr05	irgsp1_rep	five_prime_UTR	9222586	9222632	.	+	.	Parent=Os05t0251700-00
Chr05	irgsp1_rep	CDS	9222633	9222982	.	+	0	Parent=Os05t0251700-00
Chr05	irgsp1_rep	mRNA	9217013	9222943	.	-	.	ID=Os05t0251900-00;Name=Os05t0251900-00;Locus_id=Os05g0251900;CGSNL Gene Symbol=YSL3;CGSNL Gene Name=YELLOW STRIP-LIKE GENE 3;Oryzabase Gene Symbol Synonym(s)=OsYSL3%2C OsYs16;Oryzabase Gene Name Synonym(s)=rice YSL (yellow stripe-like) gene 3%2C Probable metal-nicotianamine transporter YSL3%2C Protein YELLOW STRIPE LIKE 3%2C yellow stripe 1-like transporter 3;Note=Hypothetical conserved gene.;Transcript_evidence=AB190913 (DDBJ%2C Best hit);ORF_evidence=Q6AVD0-2 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085);InterPro=Oligopeptide transporter OPT superfamily (IPR004813);Oryzabase=8361;TENOR=Os05t0251900-00;KEGG=Os05t0251900-00
Chr05	irgsp1_rep	CDS	9222607	9222943	.	-	0	Parent=Os05t0251900-00
Chr05	irgsp1_rep	CDS	9220313	9220479	.	-	2	Parent=Os05t0251900-00
Chr05	irgsp1_rep	CDS	9220089	9220186	.	-	0	Parent=Os05t0251900-00
Chr05	irgsp1_rep	CDS	9219858	9219992	.	-	1	Parent=Os05t0251900-00
Chr05	irgsp1_rep	CDS	9219064	9219250	.	-	1	Parent=Os05t0251900-00
Chr05	irgsp1_rep	CDS	9217013	9218011	.	-	0	Parent=Os05t0251900-00
Chr05	irgsp1_rep	mRNA	9223779	9229546	.	-	.	ID=Os05t0252000-01;Name=Os05t0252000-01;Locus_id=Os05g0252000;CGSNL Gene Symbol=YSL4;CGSNL Gene Name=YELLOW STRIP-LIKE GENE 4;Oryzabase Gene Symbol Synonym(s)=OsYSL4%2C OsYs17;Oryzabase Gene Name Synonym(s)=rice YSL (yellow stripe-like) gene 4%2C Probable metal-nicotianamine transporter YSL4%2C Protein YELLOW STRIPE LIKE 4%2C yellow stripe 1-like transporter 4;Note=Oligopeptide transporter OPT superfamily protein.;Transcript_evidence=AK068865 (DDBJ%2C Best hit);ORF_evidence=B9FNH8 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085);InterPro=Oligopeptide transporter OPT superfamily (IPR004813);NIAS_FLcDNA=J023002M01;Oryzabase=8362;Expression=AK068865;TENOR=Os05t0252000-01;KEGG=Os05t0252000-01
Chr05	irgsp1_rep	five_prime_UTR	9229447	9229546	.	-	.	Parent=Os05t0252000-01
Chr05	irgsp1_rep	CDS	9229113	9229446	.	-	0	Parent=Os05t0252000-01
Chr05	irgsp1_rep	CDS	9228664	9228830	.	-	2	Parent=Os05t0252000-01
Chr05	irgsp1_rep	CDS	9226744	9226841	.	-	0	Parent=Os05t0252000-01
Chr05	irgsp1_rep	CDS	9226514	9226648	.	-	1	Parent=Os05t0252000-01
Chr05	irgsp1_rep	CDS	9225773	9225959	.	-	1	Parent=Os05t0252000-01
Chr05	irgsp1_rep	CDS	9224049	9225188	.	-	0	Parent=Os05t0252000-01
Chr05	irgsp1_rep	three_prime_UTR	9223779	9224048	.	-	.	Parent=Os05t0252000-01
Chr05	irgsp1_rep	mRNA	9224080	9229450	.	+	.	ID=Os05t0252050-00;Name=Os05t0252050-00;Locus_id=Os05g0252050;Note=Hypothetical protein.;Transcript_evidence=tplb0036f21 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0252050-00
Chr05	irgsp1_rep	five_prime_UTR	9224080	9225171	.	+	.	Parent=Os05t0252050-00
Chr05	irgsp1_rep	five_prime_UTR	9225760	9225952	.	+	.	Parent=Os05t0252050-00
Chr05	irgsp1_rep	five_prime_UTR	9226507	9226633	.	+	.	Parent=Os05t0252050-00
Chr05	irgsp1_rep	five_prime_UTR	9226729	9226826	.	+	.	Parent=Os05t0252050-00
Chr05	irgsp1_rep	five_prime_UTR	9228651	9228779	.	+	.	Parent=Os05t0252050-00
Chr05	irgsp1_rep	five_prime_UTR	9229050	9229117	.	+	.	Parent=Os05t0252050-00
Chr05	irgsp1_rep	CDS	9229118	9229450	.	+	0	Parent=Os05t0252050-00
Chr05	irgsp1_rep	mRNA	9232257	9234349	.	-	.	ID=Os05t0252100-01;Name=Os05t0252100-01;Locus_id=Os05g0252100;Note=Protein of unknown function DUF620 family protein.;Transcript_evidence=AK288714 (DDBJ%2C Best hit);ORF_evidence=NP_001055033.1 (RefSeq);InterPro=Protein of unknown function DUF620 (IPR006873);NIAS_FLcDNA=J090062D20;TENOR=Os05t0252100-01;KEGG=Os05t0252100-01
Chr05	irgsp1_rep	five_prime_UTR	9234260	9234349	.	-	.	Parent=Os05t0252100-01
Chr05	irgsp1_rep	CDS	9233597	9234259	.	-	0	Parent=Os05t0252100-01
Chr05	irgsp1_rep	CDS	9232572	9233375	.	-	0	Parent=Os05t0252100-01
Chr05	irgsp1_rep	three_prime_UTR	9232257	9232571	.	-	.	Parent=Os05t0252100-01
Chr05	irgsp1_rep	mRNA	9233089	9233935	.	+	.	ID=Os05t0252250-00;Name=Os05t0252250-00;Locus_id=Os05g0252250;Note=Hypothetical protein.;Transcript_evidence=BT085554 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0252250-00
Chr05	irgsp1_rep	five_prime_UTR	9233089	9233090	.	+	.	Parent=Os05t0252250-00
Chr05	irgsp1_rep	CDS	9233091	9233366	.	+	0	Parent=Os05t0252250-00
Chr05	irgsp1_rep	CDS	9233589	9233600	.	+	0	Parent=Os05t0252250-00
Chr05	irgsp1_rep	three_prime_UTR	9233601	9233935	.	+	.	Parent=Os05t0252250-00
Chr05	irgsp1_rep	mRNA	9295182	9295553	.	+	.	ID=Os05t0252701-00;Name=Os05t0252701-00;Locus_id=Os05g0252701;Note=Non-protein coding transcript.;Transcript_evidence=CT836375 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os05t0252701-00
Chr05	irgsp1_rep	exon	9295182	9295553	.	+	.	Parent=Os05t0252701-00
Chr05	irgsp1_rep	mRNA	9302000	9302936	.	-	.	ID=Os05t0252801-00;Name=Os05t0252801-00;Locus_id=Os05g0252801;Note=Transposase%2C IS4-like domain containing protein.;Transcript_evidence=BT037367 (DDBJ);ORF_evidence=Q8S819 (UniProt);GO=Biological Process: transposition%2C DNA-mediated (GO:0006313),Molecular Function: DNA binding (GO:0003677),Molecular Function: transposase activity (GO:0004803);InterPro=Transposase%2C IS4-like (IPR002559);TENOR=Os05t0252801-00
Chr05	irgsp1_rep	five_prime_UTR	9302642	9302936	.	-	.	Parent=Os05t0252801-00
Chr05	irgsp1_rep	CDS	9302000	9302641	.	-	0	Parent=Os05t0252801-00
Chr05	irgsp1_rep	mRNA	9311705	9313841	.	-	.	ID=Os05t0253100-01;Name=Os05t0253100-01;Locus_id=Os05g0253100;Note=Conserved hypothetical protein.;Transcript_evidence=AK288186 (DDBJ%2C Best hit);ORF_evidence=Q8LM57 (UniProt);NIAS_FLcDNA=J090006D12;TENOR=Os05t0253100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	9311995	9313841	.	-	.	Parent=Os05t0253100-01
Chr05	irgsp1_rep	CDS	9311705	9311994	.	-	0	Parent=Os05t0253100-01
Chr05	irgsp1_rep	mRNA	9318025	9328269	.	+	.	ID=Os05t0253200-01;Name=Os05t0253200-01;Locus_id=Os05g0253200;Note=Conserved hypothetical protein.;Transcript_evidence=AK066537 (DDBJ%2C Best hit);ORF_evidence=B9FNI1 (UniProt);NIAS_FLcDNA=J013070G07;TENOR=Os05t0253200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	9318025	9318043	.	+	.	Parent=Os05t0253200-01
Chr05	irgsp1_rep	CDS	9318044	9318164	.	+	0	Parent=Os05t0253200-01
Chr05	irgsp1_rep	CDS	9318346	9318532	.	+	2	Parent=Os05t0253200-01
Chr05	irgsp1_rep	CDS	9320999	9321038	.	+	1	Parent=Os05t0253200-01
Chr05	irgsp1_rep	three_prime_UTR	9321039	9321062	.	+	.	Parent=Os05t0253200-01
Chr05	irgsp1_rep	three_prime_UTR	9322741	9322814	.	+	.	Parent=Os05t0253200-01
Chr05	irgsp1_rep	three_prime_UTR	9323250	9323321	.	+	.	Parent=Os05t0253200-01
Chr05	irgsp1_rep	three_prime_UTR	9323410	9323481	.	+	.	Parent=Os05t0253200-01
Chr05	irgsp1_rep	three_prime_UTR	9323791	9323862	.	+	.	Parent=Os05t0253200-01
Chr05	irgsp1_rep	three_prime_UTR	9323974	9324045	.	+	.	Parent=Os05t0253200-01
Chr05	irgsp1_rep	three_prime_UTR	9324130	9324535	.	+	.	Parent=Os05t0253200-01
Chr05	irgsp1_rep	three_prime_UTR	9324623	9324694	.	+	.	Parent=Os05t0253200-01
Chr05	irgsp1_rep	three_prime_UTR	9324773	9324847	.	+	.	Parent=Os05t0253200-01
Chr05	irgsp1_rep	three_prime_UTR	9324952	9325023	.	+	.	Parent=Os05t0253200-01
Chr05	irgsp1_rep	three_prime_UTR	9325277	9325342	.	+	.	Parent=Os05t0253200-01
Chr05	irgsp1_rep	three_prime_UTR	9325416	9325460	.	+	.	Parent=Os05t0253200-01
Chr05	irgsp1_rep	three_prime_UTR	9325554	9325618	.	+	.	Parent=Os05t0253200-01
Chr05	irgsp1_rep	three_prime_UTR	9325710	9325846	.	+	.	Parent=Os05t0253200-01
Chr05	irgsp1_rep	three_prime_UTR	9325945	9326089	.	+	.	Parent=Os05t0253200-01
Chr05	irgsp1_rep	three_prime_UTR	9326172	9326370	.	+	.	Parent=Os05t0253200-01
Chr05	irgsp1_rep	three_prime_UTR	9326445	9326603	.	+	.	Parent=Os05t0253200-01
Chr05	irgsp1_rep	three_prime_UTR	9326681	9326799	.	+	.	Parent=Os05t0253200-01
Chr05	irgsp1_rep	three_prime_UTR	9326921	9327131	.	+	.	Parent=Os05t0253200-01
Chr05	irgsp1_rep	three_prime_UTR	9327270	9327734	.	+	.	Parent=Os05t0253200-01
Chr05	irgsp1_rep	three_prime_UTR	9327823	9328269	.	+	.	Parent=Os05t0253200-01
Chr05	irgsp1_rep	mRNA	9327251	9327740	.	-	.	ID=Os05t0253301-00;Name=Os05t0253301-00;Locus_id=Os05g0253301;Note=Non-protein coding transcript.;Transcript_evidence=EU949024 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0253301-00
Chr05	irgsp1_rep	exon	9327251	9327740	.	-	.	Parent=Os05t0253301-00
Chr05	irgsp1_rep	mRNA	9344837	9346158	.	-	.	ID=Os05t0253700-00;Name=Os05t0253700-00;Locus_id=Os05g0253700;Note=Hypothetical conserved gene.;Transcript_evidence=BT069183 (DDBJ);ORF_evidence=B6SJU9 (UniProt);TENOR=Os05t0253700-00;KEGG=Os05t0253700-00
Chr05	irgsp1_rep	CDS	9345596	9346158	.	-	0	Parent=Os05t0253700-00
Chr05	irgsp1_rep	CDS	9344837	9345314	.	-	1	Parent=Os05t0253700-00
Chr05	irgsp1_rep	mRNA	9432377	9436129	.	+	.	ID=Os05t0255600-01;Name=Os05t0255600-01;Locus_id=Os05g0255600;Note=Thioredoxin domain 2 containing protein.;Transcript_evidence=AK073067 (DDBJ%2C Best hit);ORF_evidence=NP_190665.2 (RefSeq);GO=Biological Process: cell redox homeostasis (GO:0045454);InterPro=Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766);NIAS_FLcDNA=J033022A04;Expression=AK073067;TENOR=Os05t0255600-01;KEGG=Os05t0255600-01
Chr05	irgsp1_rep	five_prime_UTR	9432377	9432644	.	+	.	Parent=Os05t0255600-01
Chr05	irgsp1_rep	CDS	9432645	9432728	.	+	0	Parent=Os05t0255600-01
Chr05	irgsp1_rep	CDS	9434577	9434651	.	+	0	Parent=Os05t0255600-01
Chr05	irgsp1_rep	CDS	9434755	9434802	.	+	0	Parent=Os05t0255600-01
Chr05	irgsp1_rep	CDS	9434878	9435020	.	+	0	Parent=Os05t0255600-01
Chr05	irgsp1_rep	CDS	9435114	9435186	.	+	1	Parent=Os05t0255600-01
Chr05	irgsp1_rep	CDS	9435270	9435331	.	+	0	Parent=Os05t0255600-01
Chr05	irgsp1_rep	CDS	9435474	9435571	.	+	1	Parent=Os05t0255600-01
Chr05	irgsp1_rep	CDS	9435646	9435755	.	+	2	Parent=Os05t0255600-01
Chr05	irgsp1_rep	three_prime_UTR	9435756	9436129	.	+	.	Parent=Os05t0255600-01
Chr05	irgsp1_rep	mRNA	9438726	9442321	.	+	.	ID=Os05t0255800-01;Name=Os05t0255800-01;Locus_id=Os05g0255800;Note=Domain of unknown function DUF632 domain containing protein.;Transcript_evidence=AK063562 (DDBJ%2C Best hit);ORF_evidence=Q65XR1 (UniProt);InterPro=Domain of unknown function DUF632 (IPR006867),Domain of unknown function DUF630 (IPR006868);NIAS_FLcDNA=001-117-F04;TENOR=Os05t0255800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	9438726	9439038	.	+	.	Parent=Os05t0255800-01
Chr05	irgsp1_rep	five_prime_UTR	9440167	9440303	.	+	.	Parent=Os05t0255800-01
Chr05	irgsp1_rep	CDS	9440304	9441261	.	+	0	Parent=Os05t0255800-01
Chr05	irgsp1_rep	CDS	9441368	9441448	.	+	2	Parent=Os05t0255800-01
Chr05	irgsp1_rep	CDS	9441531	9441748	.	+	2	Parent=Os05t0255800-01
Chr05	irgsp1_rep	CDS	9442161	9442321	.	+	0	Parent=Os05t0255800-01
Chr05	irgsp1_rep	mRNA	9448801	9454455	.	+	.	ID=Os05t0256000-01;Name=Os05t0256000-01;Locus_id=Os05g0256000;Oryzabase Gene Symbol Synonym(s)=OsWD40-116%2C OseIF3i%2C eIF3i%2C EIF3I;Oryzabase Gene Name Synonym(s)=EUKARYOTIC INITIATION FACTOR 3I%2C "eukaryotic translation initiation factor 3%2C subunit i";Note=Similar to TGF-beta receptor-interacting protein 1.;Transcript_evidence=AK104927 (DDBJ%2C Best hit),AK111524 (DDBJ%2C Best hit);ORF_evidence=NP_001147501.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=001-043-H11,J013002P07;Oryzabase=10797;Expression=AK104927;TENOR=Os05t0256000-01;KEGG=Os05t0256000-01
Chr05	irgsp1_rep	five_prime_UTR	9448801	9448923	.	+	.	Parent=Os05t0256000-01
Chr05	irgsp1_rep	CDS	9448924	9449323	.	+	0	Parent=Os05t0256000-01
Chr05	irgsp1_rep	CDS	9449925	9450052	.	+	2	Parent=Os05t0256000-01
Chr05	irgsp1_rep	CDS	9450615	9450734	.	+	0	Parent=Os05t0256000-01
Chr05	irgsp1_rep	CDS	9450839	9450928	.	+	0	Parent=Os05t0256000-01
Chr05	irgsp1_rep	CDS	9451571	9451657	.	+	0	Parent=Os05t0256000-01
Chr05	irgsp1_rep	CDS	9451775	9451854	.	+	0	Parent=Os05t0256000-01
Chr05	irgsp1_rep	CDS	9453208	9453283	.	+	1	Parent=Os05t0256000-01
Chr05	irgsp1_rep	three_prime_UTR	9453284	9453307	.	+	.	Parent=Os05t0256000-01
Chr05	irgsp1_rep	three_prime_UTR	9454189	9454455	.	+	.	Parent=Os05t0256000-01
Chr05	irgsp1_rep	mRNA	9461682	9474094	.	+	.	ID=Os05t0256100-01;Name=Os05t0256100-01;Locus_id=Os05g0256100;Note=Similar to SHR5-receptor-like kinase (Fragment).;Transcript_evidence=AK073574 (DDBJ%2C Best hit);ORF_evidence=Q4PLL4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=J033046E10;TENOR=Os05t0256100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	9461682	9461698	.	+	.	Parent=Os05t0256100-01
Chr05	irgsp1_rep	CDS	9461699	9461825	.	+	0	Parent=Os05t0256100-01
Chr05	irgsp1_rep	CDS	9465524	9465707	.	+	2	Parent=Os05t0256100-01
Chr05	irgsp1_rep	CDS	9467697	9467768	.	+	1	Parent=Os05t0256100-01
Chr05	irgsp1_rep	CDS	9468573	9468644	.	+	1	Parent=Os05t0256100-01
Chr05	irgsp1_rep	CDS	9468727	9468798	.	+	1	Parent=Os05t0256100-01
Chr05	irgsp1_rep	CDS	9469084	9469155	.	+	1	Parent=Os05t0256100-01
Chr05	irgsp1_rep	CDS	9469254	9469325	.	+	1	Parent=Os05t0256100-01
Chr05	irgsp1_rep	CDS	9469408	9469479	.	+	1	Parent=Os05t0256100-01
Chr05	irgsp1_rep	CDS	9469755	9469826	.	+	1	Parent=Os05t0256100-01
Chr05	irgsp1_rep	CDS	9469923	9469994	.	+	1	Parent=Os05t0256100-01
Chr05	irgsp1_rep	CDS	9470081	9470155	.	+	1	Parent=Os05t0256100-01
Chr05	irgsp1_rep	CDS	9470258	9470329	.	+	1	Parent=Os05t0256100-01
Chr05	irgsp1_rep	CDS	9470424	9470489	.	+	1	Parent=Os05t0256100-01
Chr05	irgsp1_rep	CDS	9470588	9470653	.	+	1	Parent=Os05t0256100-01
Chr05	irgsp1_rep	CDS	9470725	9470769	.	+	1	Parent=Os05t0256100-01
Chr05	irgsp1_rep	CDS	9471050	9471068	.	+	1	Parent=Os05t0256100-01
Chr05	irgsp1_rep	three_prime_UTR	9471069	9471429	.	+	.	Parent=Os05t0256100-01
Chr05	irgsp1_rep	three_prime_UTR	9471512	9471710	.	+	.	Parent=Os05t0256100-01
Chr05	irgsp1_rep	three_prime_UTR	9471783	9471941	.	+	.	Parent=Os05t0256100-01
Chr05	irgsp1_rep	three_prime_UTR	9472024	9472142	.	+	.	Parent=Os05t0256100-01
Chr05	irgsp1_rep	three_prime_UTR	9472224	9472453	.	+	.	Parent=Os05t0256100-01
Chr05	irgsp1_rep	three_prime_UTR	9472607	9472838	.	+	.	Parent=Os05t0256100-01
Chr05	irgsp1_rep	three_prime_UTR	9472922	9473072	.	+	.	Parent=Os05t0256100-01
Chr05	irgsp1_rep	three_prime_UTR	9473512	9474094	.	+	.	Parent=Os05t0256100-01
Chr05	irgsp1_rep	mRNA	9472588	9473098	.	-	.	ID=Os05t0256250-00;Name=Os05t0256250-00;Locus_id=Os05g0256250;Note=Non-protein coding transcript.;Transcript_evidence=EU949024 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0256250-00
Chr05	irgsp1_rep	exon	9472588	9473098	.	-	.	Parent=Os05t0256250-00
Chr05	irgsp1_rep	mRNA	9501307	9516801	.	+	.	ID=Os05t0256350-00;Name=Os05t0256350-00;Locus_id=Os05g0256350;Note=Similar to HAT family dimerisation domain containing protein.;Transcript_evidence=AK122139 (DDBJ%2C Secondary hit);ORF_evidence=Q2QPA8 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677);InterPro=Zinc finger%2C BED-type predicted (IPR003656),Domain of unknown function DUF659 (IPR007021),Ribonuclease H-like (IPR012337);Expression=AK122139;TENOR=Os05t0256350-00;KEGG=Os05t0256350-00
Chr05	irgsp1_rep	five_prime_UTR	9501307	9501595	.	+	.	Parent=Os05t0256350-00
Chr05	irgsp1_rep	CDS	9501596	9501611	.	+	0	Parent=Os05t0256350-00
Chr05	irgsp1_rep	CDS	9513968	9515274	.	+	2	Parent=Os05t0256350-00
Chr05	irgsp1_rep	three_prime_UTR	9515275	9515996	.	+	.	Parent=Os05t0256350-00
Chr05	irgsp1_rep	three_prime_UTR	9516114	9516327	.	+	.	Parent=Os05t0256350-00
Chr05	irgsp1_rep	three_prime_UTR	9516355	9516801	.	+	.	Parent=Os05t0256350-00
Chr05	irgsp1_rep	mRNA	9517563	9527490	.	+	.	ID=Os05t0256500-00;Name=Os05t0256500-00;Locus_id=Os05g0256500;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8B033 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os05t0256500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	9517563	9517671	.	+	0	Parent=Os05t0256500-00
Chr05	irgsp1_rep	CDS	9517783	9517969	.	+	2	Parent=Os05t0256500-00
Chr05	irgsp1_rep	CDS	9522305	9522376	.	+	1	Parent=Os05t0256500-00
Chr05	irgsp1_rep	CDS	9523085	9523156	.	+	1	Parent=Os05t0256500-00
Chr05	irgsp1_rep	CDS	9523403	9523474	.	+	1	Parent=Os05t0256500-00
Chr05	irgsp1_rep	CDS	9524189	9524260	.	+	1	Parent=Os05t0256500-00
Chr05	irgsp1_rep	CDS	9524437	9524502	.	+	1	Parent=Os05t0256500-00
Chr05	irgsp1_rep	CDS	9525319	9525386	.	+	1	Parent=Os05t0256500-00
Chr05	irgsp1_rep	CDS	9525745	9525903	.	+	2	Parent=Os05t0256500-00
Chr05	irgsp1_rep	CDS	9525985	9526103	.	+	2	Parent=Os05t0256500-00
Chr05	irgsp1_rep	CDS	9526247	9526457	.	+	0	Parent=Os05t0256500-00
Chr05	irgsp1_rep	CDS	9526622	9526853	.	+	2	Parent=Os05t0256500-00
Chr05	irgsp1_rep	CDS	9526938	9527088	.	+	1	Parent=Os05t0256500-00
Chr05	irgsp1_rep	CDS	9527173	9527490	.	+	0	Parent=Os05t0256500-00
Chr05	irgsp1_rep	mRNA	9526586	9527091	.	-	.	ID=Os05t0256801-00;Name=Os05t0256801-00;Locus_id=Os05g0256801;Note=Non-protein coding transcript.;Transcript_evidence=EU949024 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0256801-00
Chr05	irgsp1_rep	exon	9526586	9527091	.	-	.	Parent=Os05t0256801-00
Chr05	irgsp1_rep	mRNA	9585993	9593266	.	+	.	ID=Os05t0257100-01;Name=Os05t0257100-01;Locus_id=Os05g0257100;Note=Leucine-rich repeat%2C plant specific containing protein.;Transcript_evidence=AK101696 (DDBJ%2C Best hit);ORF_evidence=Q4PLL4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Malectin (IPR021720);NIAS_FLcDNA=J033060B21;Oryzabase=18224;Expression=AK101696;TENOR=Os05t0257100-01;KEGG=Os05t0257100-01
Chr05	irgsp1_rep	five_prime_UTR	9585993	9586065	.	+	.	Parent=Os05t0257100-01
Chr05	irgsp1_rep	CDS	9586066	9586171	.	+	0	Parent=Os05t0257100-01
Chr05	irgsp1_rep	CDS	9587547	9587733	.	+	2	Parent=Os05t0257100-01
Chr05	irgsp1_rep	CDS	9590027	9590098	.	+	1	Parent=Os05t0257100-01
Chr05	irgsp1_rep	CDS	9590301	9590372	.	+	1	Parent=Os05t0257100-01
Chr05	irgsp1_rep	CDS	9590454	9590525	.	+	1	Parent=Os05t0257100-01
Chr05	irgsp1_rep	CDS	9590879	9590950	.	+	1	Parent=Os05t0257100-01
Chr05	irgsp1_rep	CDS	9591051	9591122	.	+	1	Parent=Os05t0257100-01
Chr05	irgsp1_rep	CDS	9591210	9591281	.	+	1	Parent=Os05t0257100-01
Chr05	irgsp1_rep	CDS	9591557	9591628	.	+	1	Parent=Os05t0257100-01
Chr05	irgsp1_rep	CDS	9591720	9591791	.	+	1	Parent=Os05t0257100-01
Chr05	irgsp1_rep	CDS	9591868	9591942	.	+	1	Parent=Os05t0257100-01
Chr05	irgsp1_rep	CDS	9592047	9592118	.	+	1	Parent=Os05t0257100-01
Chr05	irgsp1_rep	CDS	9592211	9592276	.	+	1	Parent=Os05t0257100-01
Chr05	irgsp1_rep	CDS	9592373	9592438	.	+	1	Parent=Os05t0257100-01
Chr05	irgsp1_rep	CDS	9592509	9592553	.	+	1	Parent=Os05t0257100-01
Chr05	irgsp1_rep	CDS	9592641	9592705	.	+	1	Parent=Os05t0257100-01
Chr05	irgsp1_rep	CDS	9592794	9593176	.	+	2	Parent=Os05t0257100-01
Chr05	irgsp1_rep	CDS	9593243	9593266	.	+	0	Parent=Os05t0257100-01
Chr05	irgsp1_rep	mRNA	9585993	9588945	.	+	.	ID=Os05t0257100-02;Name=Os05t0257100-02;Locus_id=Os05g0257100;Note=Similar to SHR5-receptor-like kinase (Fragment).;Transcript_evidence=AK067464 (DDBJ%2C Best hit);ORF_evidence=Q4PLL4 (UniProt);NIAS_FLcDNA=J013099L16;Oryzabase=18224;Expression=AK067464;TENOR=Os05t0257100-02;KEGG=Os05t0257100-02
Chr05	irgsp1_rep	five_prime_UTR	9585993	9586065	.	+	.	Parent=Os05t0257100-02
Chr05	irgsp1_rep	CDS	9586066	9586171	.	+	0	Parent=Os05t0257100-02
Chr05	irgsp1_rep	CDS	9587547	9587848	.	+	2	Parent=Os05t0257100-02
Chr05	irgsp1_rep	three_prime_UTR	9587849	9588945	.	+	.	Parent=Os05t0257100-02
Chr05	irgsp1_rep	mRNA	9594321	9594828	.	-	.	ID=Os05t0257333-00;Name=Os05t0257333-00;Locus_id=Os05g0257333;Note=Non-protein coding transcript.;Transcript_evidence=EU949024 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0257333-00
Chr05	irgsp1_rep	exon	9594321	9594828	.	-	.	Parent=Os05t0257333-00
Chr05	irgsp1_rep	mRNA	9641845	9642828	.	-	.	ID=Os05t0258000-00;Name=Os05t0258000-00;Locus_id=Os05g0258000;Note=Hypothetical protein.;Transcript_evidence=CU406843 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os05t0258000-00
Chr05	irgsp1_rep	five_prime_UTR	9642828	9642828	.	-	.	Parent=Os05t0258000-00
Chr05	irgsp1_rep	CDS	9642156	9642827	.	-	0	Parent=Os05t0258000-00
Chr05	irgsp1_rep	three_prime_UTR	9641845	9642155	.	-	.	Parent=Os05t0258000-00
Chr05	irgsp1_rep	mRNA	9647991	9654813	.	+	.	ID=Os05t0258400-00;Name=Os05t0258400-00;Locus_id=Os05g0258400;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FNJ1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635),Malectin (IPR021720);TENOR=Os05t0258400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	9647991	9648091	.	+	0	Parent=Os05t0258400-00
Chr05	irgsp1_rep	CDS	9649600	9649671	.	+	1	Parent=Os05t0258400-00
Chr05	irgsp1_rep	CDS	9650013	9650084	.	+	1	Parent=Os05t0258400-00
Chr05	irgsp1_rep	CDS	9650412	9650483	.	+	1	Parent=Os05t0258400-00
Chr05	irgsp1_rep	CDS	9650591	9650662	.	+	1	Parent=Os05t0258400-00
Chr05	irgsp1_rep	CDS	9650747	9650818	.	+	1	Parent=Os05t0258400-00
Chr05	irgsp1_rep	CDS	9651412	9651486	.	+	1	Parent=Os05t0258400-00
Chr05	irgsp1_rep	CDS	9651749	9651814	.	+	1	Parent=Os05t0258400-00
Chr05	irgsp1_rep	CDS	9652187	9652251	.	+	1	Parent=Os05t0258400-00
Chr05	irgsp1_rep	CDS	9652336	9652715	.	+	2	Parent=Os05t0258400-00
Chr05	irgsp1_rep	CDS	9653053	9653103	.	+	0	Parent=Os05t0258400-00
Chr05	irgsp1_rep	CDS	9653547	9653757	.	+	0	Parent=Os05t0258400-00
Chr05	irgsp1_rep	CDS	9653896	9654127	.	+	2	Parent=Os05t0258400-00
Chr05	irgsp1_rep	CDS	9654210	9654360	.	+	1	Parent=Os05t0258400-00
Chr05	irgsp1_rep	CDS	9654451	9654813	.	+	0	Parent=Os05t0258400-00
Chr05	irgsp1_rep	mRNA	9653913	9654363	.	-	.	ID=Os05t0258501-00;Name=Os05t0258501-00;Locus_id=Os05g0258501;Note=Non-protein coding transcript.;Transcript_evidence=EU949024 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0258501-00
Chr05	irgsp1_rep	exon	9653913	9654363	.	-	.	Parent=Os05t0258501-00
Chr05	irgsp1_rep	mRNA	9738525	9739010	.	-	.	ID=Os05t0259601-00;Name=Os05t0259601-00;Locus_id=Os05g0259601;Note=Non-protein coding transcript.;Transcript_evidence=EU949024 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0259601-00
Chr05	irgsp1_rep	exon	9738525	9739010	.	-	.	Parent=Os05t0259601-00
Chr05	irgsp1_rep	mRNA	10113038	10113510	.	+	.	ID=Os05t0261001-00;Name=Os05t0261001-00;Locus_id=Os05g0261001;Note=Non-protein coding transcript.;Transcript_evidence=EU949024 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0261001-00
Chr05	irgsp1_rep	exon	10113038	10113510	.	+	.	Parent=Os05t0261001-00
Chr05	irgsp1_rep	mRNA	10124779	10126224	.	-	.	ID=Os05t0261700-01;Name=Os05t0261700-01;Locus_id=Os05g0261700;Oryzabase Gene Name Synonym(s)=SHR5-receptor-like kinase;Note=Hypothetical conserved gene.;Transcript_evidence=AK106224 (DDBJ%2C Best hit);ORF_evidence=Q60DQ8 (UniProt);NIAS_FLcDNA=002-100-A03;Oryzabase=16794;Expression=AK106224;TENOR=Os05t0261700-01;KEGG=Os05t0261700-01
Chr05	irgsp1_rep	five_prime_UTR	10125733	10126224	.	-	.	Parent=Os05t0261700-01
Chr05	irgsp1_rep	CDS	10125346	10125732	.	-	0	Parent=Os05t0261700-01
Chr05	irgsp1_rep	three_prime_UTR	10124779	10125345	.	-	.	Parent=Os05t0261700-01
Chr05	irgsp1_rep	mRNA	10114810	10125806	.	-	.	ID=Os05t0261700-02;Name=Os05t0261700-02;Locus_id=Os05g0261700;Oryzabase Gene Name Synonym(s)=SHR5-receptor-like kinase;Note=Leucine-rich repeat%2C plant specific containing protein.;Transcript_evidence=AK066626 (DDBJ%2C Best hit);ORF_evidence=NP_001052392.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Malectin (IPR021720);NIAS_FLcDNA=J013069L21;Oryzabase=16794;TENOR=Os05t0261700-02
Chr05	irgsp1_rep	five_prime_UTR	10124209	10125806	.	-	.	Parent=Os05t0261700-02
Chr05	irgsp1_rep	CDS	10124009	10124208	.	-	0	Parent=Os05t0261700-02
Chr05	irgsp1_rep	CDS	10123481	10123552	.	-	1	Parent=Os05t0261700-02
Chr05	irgsp1_rep	CDS	10118071	10118142	.	-	1	Parent=Os05t0261700-02
Chr05	irgsp1_rep	CDS	10117919	10117990	.	-	1	Parent=Os05t0261700-02
Chr05	irgsp1_rep	CDS	10116960	10117031	.	-	1	Parent=Os05t0261700-02
Chr05	irgsp1_rep	CDS	10116777	10116848	.	-	1	Parent=Os05t0261700-02
Chr05	irgsp1_rep	CDS	10116629	10116700	.	-	1	Parent=Os05t0261700-02
Chr05	irgsp1_rep	CDS	10116267	10116338	.	-	1	Parent=Os05t0261700-02
Chr05	irgsp1_rep	CDS	10116108	10116179	.	-	1	Parent=Os05t0261700-02
Chr05	irgsp1_rep	CDS	10115956	10116030	.	-	1	Parent=Os05t0261700-02
Chr05	irgsp1_rep	CDS	10115780	10115851	.	-	1	Parent=Os05t0261700-02
Chr05	irgsp1_rep	CDS	10115622	10115687	.	-	1	Parent=Os05t0261700-02
Chr05	irgsp1_rep	CDS	10115461	10115526	.	-	1	Parent=Os05t0261700-02
Chr05	irgsp1_rep	CDS	10115346	10115390	.	-	1	Parent=Os05t0261700-02
Chr05	irgsp1_rep	CDS	10115192	10115256	.	-	1	Parent=Os05t0261700-02
Chr05	irgsp1_rep	CDS	10114810	10115103	.	-	2	Parent=Os05t0261700-02
Chr05	irgsp1_rep	mRNA	10232710	10246527	.	+	.	ID=Os05t0263100-00;Name=Os05t0263100-00;Locus_id=Os05g0263100;Note=Similar to SHR5-receptor-like kinase (Fragment).;Transcript_evidence=DQ067098 (DDBJ);ORF_evidence=Q4PLL4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635),Malectin (IPR021720);TENOR=Os05t0263100-00;KEGG=Os05t0263100-00
Chr05	irgsp1_rep	CDS	10232710	10232923	.	+	0	Parent=Os05t0263100-00
Chr05	irgsp1_rep	CDS	10234022	10234208	.	+	2	Parent=Os05t0263100-00
Chr05	irgsp1_rep	CDS	10234539	10234610	.	+	1	Parent=Os05t0263100-00
Chr05	irgsp1_rep	CDS	10240588	10240659	.	+	1	Parent=Os05t0263100-00
Chr05	irgsp1_rep	CDS	10240739	10240810	.	+	1	Parent=Os05t0263100-00
Chr05	irgsp1_rep	CDS	10241460	10241531	.	+	1	Parent=Os05t0263100-00
Chr05	irgsp1_rep	CDS	10241644	10241715	.	+	1	Parent=Os05t0263100-00
Chr05	irgsp1_rep	CDS	10241792	10241863	.	+	1	Parent=Os05t0263100-00
Chr05	irgsp1_rep	CDS	10242153	10242224	.	+	1	Parent=Os05t0263100-00
Chr05	irgsp1_rep	CDS	10242323	10242394	.	+	1	Parent=Os05t0263100-00
Chr05	irgsp1_rep	CDS	10242472	10242525	.	+	1	Parent=Os05t0263100-00
Chr05	irgsp1_rep	CDS	10242627	10242722	.	+	1	Parent=Os05t0263100-00
Chr05	irgsp1_rep	CDS	10242814	10242879	.	+	1	Parent=Os05t0263100-00
Chr05	irgsp1_rep	CDS	10242975	10243040	.	+	1	Parent=Os05t0263100-00
Chr05	irgsp1_rep	CDS	10243113	10243157	.	+	1	Parent=Os05t0263100-00
Chr05	irgsp1_rep	CDS	10243247	10243311	.	+	1	Parent=Os05t0263100-00
Chr05	irgsp1_rep	CDS	10243431	10243810	.	+	2	Parent=Os05t0263100-00
Chr05	irgsp1_rep	CDS	10243895	10244093	.	+	0	Parent=Os05t0263100-00
Chr05	irgsp1_rep	CDS	10244166	10244324	.	+	2	Parent=Os05t0263100-00
Chr05	irgsp1_rep	CDS	10244407	10244525	.	+	2	Parent=Os05t0263100-00
Chr05	irgsp1_rep	CDS	10244659	10244869	.	+	0	Parent=Os05t0263100-00
Chr05	irgsp1_rep	CDS	10245701	10245932	.	+	2	Parent=Os05t0263100-00
Chr05	irgsp1_rep	CDS	10246015	10246165	.	+	1	Parent=Os05t0263100-00
Chr05	irgsp1_rep	CDS	10246264	10246527	.	+	0	Parent=Os05t0263100-00
Chr05	irgsp1_rep	mRNA	10245696	10246168	.	-	.	ID=Os05t0263301-00;Name=Os05t0263301-00;Locus_id=Os05g0263301;Note=Non-protein coding transcript.;Transcript_evidence=EU949024 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0263301-00
Chr05	irgsp1_rep	exon	10245696	10246168	.	-	.	Parent=Os05t0263301-00
Chr05	irgsp1_rep	mRNA	10266529	10269309	.	-	.	ID=Os05t0263500-01;Name=Os05t0263500-01;Locus_id=Os05g0263500;Note=Non-protein coding transcript.;Transcript_evidence=AK101739 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J033061L02;TENOR=Os05t0263500-01
Chr05	irgsp1_rep	exon	10268202	10269309	.	-	.	Parent=Os05t0263500-01
Chr05	irgsp1_rep	exon	10267447	10267513	.	-	.	Parent=Os05t0263500-01
Chr05	irgsp1_rep	exon	10266529	10266777	.	-	.	Parent=Os05t0263500-01
Chr05	irgsp1_rep	mRNA	10337232	10344492	.	+	.	ID=Os05t0264200-00;Name=Os05t0264200-00;Locus_id=Os05g0264200;Note=Protein of unknown function DUF639 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6AT99 (UniProt);InterPro=Protein of unknown function DUF639 (IPR006927);TENOR=Os05t0264200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	10337232	10337440	.	+	0	Parent=Os05t0264200-00
Chr05	irgsp1_rep	CDS	10338401	10338635	.	+	1	Parent=Os05t0264200-00
Chr05	irgsp1_rep	CDS	10338798	10338967	.	+	0	Parent=Os05t0264200-00
Chr05	irgsp1_rep	CDS	10340689	10340831	.	+	1	Parent=Os05t0264200-00
Chr05	irgsp1_rep	CDS	10340955	10341132	.	+	2	Parent=Os05t0264200-00
Chr05	irgsp1_rep	CDS	10341806	10342373	.	+	1	Parent=Os05t0264200-00
Chr05	irgsp1_rep	CDS	10344484	10344492	.	+	0	Parent=Os05t0264200-00
Chr05	irgsp1_rep	mRNA	10525087	10527433	.	+	.	ID=Os05t0266900-01;Name=Os05t0266900-01;Locus_id=Os05g0266900;Note=Hypothetical protein.;Transcript_evidence=AK102532 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033096E24;Expression=AK102532;TENOR=Os05t0266900-01;KEGG=Os05t0266900-01
Chr05	irgsp1_rep	five_prime_UTR	10525087	10525281	.	+	.	Parent=Os05t0266900-01
Chr05	irgsp1_rep	five_prime_UTR	10525376	10525492	.	+	.	Parent=Os05t0266900-01
Chr05	irgsp1_rep	five_prime_UTR	10525676	10525845	.	+	.	Parent=Os05t0266900-01
Chr05	irgsp1_rep	five_prime_UTR	10525986	10526760	.	+	.	Parent=Os05t0266900-01
Chr05	irgsp1_rep	CDS	10526761	10527009	.	+	0	Parent=Os05t0266900-01
Chr05	irgsp1_rep	three_prime_UTR	10527010	10527125	.	+	.	Parent=Os05t0266900-01
Chr05	irgsp1_rep	three_prime_UTR	10527260	10527433	.	+	.	Parent=Os05t0266900-01
Chr05	irgsp1_rep	mRNA	10537478	10546650	.	-	.	ID=Os05t0267100-01;Name=Os05t0267100-01;Locus_id=Os05g0267100;Note=Similar to Transporter-like protein.;Transcript_evidence=AK065555 (DDBJ%2C Best hit);ORF_evidence=B6TF16 (UniProt);InterPro=Cellular retinaldehyde-binding/triple function%2C N-terminal (IPR008273),Phosphatidylinositol transfer protein-like%2C N-terminal (IPR011074);NIAS_FLcDNA=J013026N17;TENOR=Os05t0267100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	10546488	10546650	.	-	.	Parent=Os05t0267100-01
Chr05	irgsp1_rep	five_prime_UTR	10545472	10545718	.	-	.	Parent=Os05t0267100-01
Chr05	irgsp1_rep	CDS	10545439	10545471	.	-	0	Parent=Os05t0267100-01
Chr05	irgsp1_rep	CDS	10539049	10539261	.	-	0	Parent=Os05t0267100-01
Chr05	irgsp1_rep	three_prime_UTR	10538893	10539048	.	-	.	Parent=Os05t0267100-01
Chr05	irgsp1_rep	three_prime_UTR	10538261	10538506	.	-	.	Parent=Os05t0267100-01
Chr05	irgsp1_rep	three_prime_UTR	10537478	10537987	.	-	.	Parent=Os05t0267100-01
Chr05	irgsp1_rep	mRNA	10543628	10546650	.	-	.	ID=Os05t0267100-02;Name=Os05t0267100-02;Locus_id=Os05g0267100;Note=Hypothetical conserved gene.;Transcript_evidence=AK065811 (DDBJ%2C Best hit);ORF_evidence=Q6ATF1 (UniProt);NIAS_FLcDNA=J013039F07;Expression=AK065811;TENOR=Os05t0267100-02;KEGG=Os05t0267100-02
Chr05	irgsp1_rep	five_prime_UTR	10546563	10546650	.	-	.	Parent=Os05t0267100-02
Chr05	irgsp1_rep	CDS	10546488	10546562	.	-	0	Parent=Os05t0267100-02
Chr05	irgsp1_rep	CDS	10545464	10545718	.	-	0	Parent=Os05t0267100-02
Chr05	irgsp1_rep	three_prime_UTR	10543628	10545463	.	-	.	Parent=Os05t0267100-02
Chr05	irgsp1_rep	mRNA	10538915	10546650	.	-	.	ID=Os05t0267100-03;Name=Os05t0267100-03;Locus_id=Os05g0267100;Note=Similar to Transporter-like protein.;Transcript_evidence=AK062790 (DDBJ%2C Best hit);ORF_evidence=B6TF16 (UniProt);InterPro=Cellular retinaldehyde-binding/triple function%2C N-terminal (IPR008273),Phosphatidylinositol transfer protein-like%2C N-terminal (IPR011074);NIAS_FLcDNA=001-107-C01;Expression=AK062790;TENOR=Os05t0267100-03;KEGG=Os05t0267100-03
Chr05	irgsp1_rep	five_prime_UTR	10546563	10546650	.	-	.	Parent=Os05t0267100-03
Chr05	irgsp1_rep	CDS	10546488	10546562	.	-	0	Parent=Os05t0267100-03
Chr05	irgsp1_rep	CDS	10539049	10539261	.	-	0	Parent=Os05t0267100-03
Chr05	irgsp1_rep	three_prime_UTR	10538915	10539048	.	-	.	Parent=Os05t0267100-03
Chr05	irgsp1_rep	mRNA	10653770	10654348	.	-	.	ID=Os05t0267732-00;Name=Os05t0267732-00;Locus_id=Os05g0267732;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6ATE3 (UniProt);TENOR=Os05t0267732-00;KEGG=Os05t0267732-00
Chr05	irgsp1_rep	CDS	10653770	10654348	.	-	0	Parent=Os05t0267732-00
Chr05	irgsp1_rep	mRNA	10662362	10662940	.	-	.	ID=Os05t0267766-00;Name=Os05t0267766-00;Locus_id=Os05g0267766;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6ATE3 (UniProt);TENOR=Os05t0267766-00
Chr05	irgsp1_rep	CDS	10662362	10662940	.	-	0	Parent=Os05t0267766-00
Chr05	irgsp1_rep	mRNA	10672412	10675647	.	-	.	ID=Os05t0267800-01;Name=Os05t0267800-01;Locus_id=Os05g0267800;Note=Cellular retinaldehyde-binding/triple function%2C C-terminal domain containing protein.;Transcript_evidence=AK061207 (DDBJ%2C Best hit);ORF_evidence=B6TF16 (UniProt);InterPro=Cellular retinaldehyde-binding/triple function%2C C-terminal (IPR001251),Cellular retinaldehyde-binding/triple function%2C N-terminal (IPR008273),Phosphatidylinositol transfer protein-like%2C N-terminal (IPR011074);NIAS_FLcDNA=006-210-C03;Expression=AK061207;TENOR=Os05t0267800-01;KEGG=Os05t0267800-01
Chr05	irgsp1_rep	five_prime_UTR	10675522	10675647	.	-	.	Parent=Os05t0267800-01
Chr05	irgsp1_rep	CDS	10675441	10675521	.	-	0	Parent=Os05t0267800-01
Chr05	irgsp1_rep	CDS	10674599	10674778	.	-	0	Parent=Os05t0267800-01
Chr05	irgsp1_rep	CDS	10673505	10673606	.	-	0	Parent=Os05t0267800-01
Chr05	irgsp1_rep	CDS	10672982	10673227	.	-	0	Parent=Os05t0267800-01
Chr05	irgsp1_rep	CDS	10672588	10672830	.	-	0	Parent=Os05t0267800-01
Chr05	irgsp1_rep	three_prime_UTR	10672412	10672587	.	-	.	Parent=Os05t0267800-01
Chr05	irgsp1_rep	mRNA	10713218	10717146	.	+	.	ID=Os05t0267850-00;Name=Os05t0267850-00;Locus_id=Os05g0267850;Note=Similar to Agmatine coumaroyltransferase-1.;Transcript_evidence=AK366383 (DDBJ);ORF_evidence=A9ZPJ6 (UniProt);InterPro=Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os05t0267850-00
Chr05	irgsp1_rep	five_prime_UTR	10713218	10713740	.	+	.	Parent=Os05t0267850-00
Chr05	irgsp1_rep	five_prime_UTR	10716612	10716946	.	+	.	Parent=Os05t0267850-00
Chr05	irgsp1_rep	CDS	10716947	10717144	.	+	0	Parent=Os05t0267850-00
Chr05	irgsp1_rep	three_prime_UTR	10717145	10717146	.	+	.	Parent=Os05t0267850-00
Chr05	irgsp1_rep	mRNA	10720401	10723770	.	-	.	ID=Os05t0267900-01;Name=Os05t0267900-01;Locus_id=Os05g0267900;Note=Conserved hypothetical protein.;Transcript_evidence=AK099521 (DDBJ%2C Best hit);ORF_evidence=NP_001062089.1 (RefSeq);NIAS_FLcDNA=J013030F02;TENOR=Os05t0267900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	10723459	10723770	.	-	.	Parent=Os05t0267900-01
Chr05	irgsp1_rep	CDS	10723262	10723458	.	-	0	Parent=Os05t0267900-01
Chr05	irgsp1_rep	CDS	10722951	10723179	.	-	1	Parent=Os05t0267900-01
Chr05	irgsp1_rep	CDS	10722112	10722129	.	-	0	Parent=Os05t0267900-01
Chr05	irgsp1_rep	three_prime_UTR	10721973	10722111	.	-	.	Parent=Os05t0267900-01
Chr05	irgsp1_rep	three_prime_UTR	10721535	10721888	.	-	.	Parent=Os05t0267900-01
Chr05	irgsp1_rep	three_prime_UTR	10720401	10720837	.	-	.	Parent=Os05t0267900-01
Chr05	irgsp1_rep	mRNA	10759630	10761612	.	+	.	ID=Os05t0268400-01;Name=Os05t0268400-01;Locus_id=Os05g0268400;Note=Similar to Major facilitator superfamily antiporter.;Transcript_evidence=AK288425 (DDBJ%2C Best hit);ORF_evidence=Q8H6D6 (UniProt);NIAS_FLcDNA=J090032K06;TENOR=Os05t0268400-01;KEGG=Os05t0268400-01
Chr05	irgsp1_rep	five_prime_UTR	10759630	10759675	.	+	.	Parent=Os05t0268400-01
Chr05	irgsp1_rep	CDS	10759676	10760047	.	+	0	Parent=Os05t0268400-01
Chr05	irgsp1_rep	three_prime_UTR	10760048	10761612	.	+	.	Parent=Os05t0268400-01
Chr05	irgsp1_rep	mRNA	10775907	10790674	.	-	.	ID=Os05t0268500-01;Name=Os05t0268500-01;Locus_id=Os05g0268500;CGSNL Gene Symbol=SCP27;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 27;Oryzabase Gene Symbol Synonym(s)=OsEnS-75%2C OsSCP27%2C OsSCP28%2C SCP28;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 75%2C Serine carboxypeptidase 27%2C Serine carboxypeptidase 28;Note=Similar to Serine carboxypeptidase 2.;Transcript_evidence=AK107270 (DDBJ%2C Best hit);ORF_evidence=P08819 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=002-125-H11;Oryzabase=18393;Expression=AK107270;TENOR=Os05t0268500-01;KEGG=Os05t0268500-01
Chr05	irgsp1_rep	five_prime_UTR	10790624	10790674	.	-	.	Parent=Os05t0268500-01
Chr05	irgsp1_rep	CDS	10790224	10790623	.	-	0	Parent=Os05t0268500-01
Chr05	irgsp1_rep	CDS	10790020	10790115	.	-	2	Parent=Os05t0268500-01
Chr05	irgsp1_rep	CDS	10789832	10789925	.	-	2	Parent=Os05t0268500-01
Chr05	irgsp1_rep	CDS	10789655	10789739	.	-	1	Parent=Os05t0268500-01
Chr05	irgsp1_rep	CDS	10789053	10789331	.	-	0	Parent=Os05t0268500-01
Chr05	irgsp1_rep	CDS	10788757	10788884	.	-	0	Parent=Os05t0268500-01
Chr05	irgsp1_rep	CDS	10787473	10787568	.	-	1	Parent=Os05t0268500-01
Chr05	irgsp1_rep	CDS	10776679	10776784	.	-	1	Parent=Os05t0268500-01
Chr05	irgsp1_rep	CDS	10776008	10776175	.	-	0	Parent=Os05t0268500-01
Chr05	irgsp1_rep	three_prime_UTR	10775907	10776007	.	-	.	Parent=Os05t0268500-01
Chr05	irgsp1_rep	mRNA	10757560	10790672	.	-	.	ID=Os05t0268500-02;Name=Os05t0268500-02;Locus_id=Os05g0268500;CGSNL Gene Symbol=SCP27;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 27;Oryzabase Gene Symbol Synonym(s)=OsEnS-75%2C OsSCP27%2C OsSCP28%2C SCP28;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 75%2C Serine carboxypeptidase 27%2C Serine carboxypeptidase 28;Note=Similar to Serine carboxypeptidase II chains A and B (EC 3.4.16.6) (Carboxypeptidase D) (CPDW-II) (CP-WII).;Transcript_evidence=AK064671 (DDBJ%2C Best hit);ORF_evidence=P08819 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=002-115-E03;Oryzabase=18393;Expression=AK064671;TENOR=Os05t0268500-02;KEGG=Os05t0268500-02 (EC:3.4.16.6)
Chr05	irgsp1_rep	five_prime_UTR	10790624	10790672	.	-	.	Parent=Os05t0268500-02
Chr05	irgsp1_rep	CDS	10790224	10790623	.	-	0	Parent=Os05t0268500-02
Chr05	irgsp1_rep	CDS	10790020	10790115	.	-	2	Parent=Os05t0268500-02
Chr05	irgsp1_rep	CDS	10789832	10789925	.	-	2	Parent=Os05t0268500-02
Chr05	irgsp1_rep	CDS	10789655	10789739	.	-	1	Parent=Os05t0268500-02
Chr05	irgsp1_rep	CDS	10789053	10789331	.	-	0	Parent=Os05t0268500-02
Chr05	irgsp1_rep	CDS	10788757	10788884	.	-	0	Parent=Os05t0268500-02
Chr05	irgsp1_rep	CDS	10787473	10787568	.	-	1	Parent=Os05t0268500-02
Chr05	irgsp1_rep	CDS	10776679	10776784	.	-	1	Parent=Os05t0268500-02
Chr05	irgsp1_rep	CDS	10758265	10758351	.	-	0	Parent=Os05t0268500-02
Chr05	irgsp1_rep	CDS	10757829	10757882	.	-	0	Parent=Os05t0268500-02
Chr05	irgsp1_rep	three_prime_UTR	10757560	10757828	.	-	.	Parent=Os05t0268500-02
Chr05	irgsp1_rep	mRNA	10781341	10790671	.	-	.	ID=Os05t0268500-03;Name=Os05t0268500-03;Locus_id=Os05g0268500;CGSNL Gene Symbol=SCP27;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 27;Oryzabase Gene Symbol Synonym(s)=OsEnS-75%2C OsSCP27%2C OsSCP28%2C SCP28;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 75%2C Serine carboxypeptidase 27%2C Serine carboxypeptidase 28;Note=Similar to Serine carboxypeptidase 2.;Transcript_evidence=AK107218 (DDBJ%2C Best hit);ORF_evidence=P08819 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=002-125-C12;Oryzabase=18393;Expression=AK107218;TENOR=Os05t0268500-03;KEGG=Os05t0268500-03 (EC:3.4.16.5)
Chr05	irgsp1_rep	five_prime_UTR	10790624	10790671	.	-	.	Parent=Os05t0268500-03
Chr05	irgsp1_rep	CDS	10790224	10790623	.	-	0	Parent=Os05t0268500-03
Chr05	irgsp1_rep	CDS	10790020	10790115	.	-	2	Parent=Os05t0268500-03
Chr05	irgsp1_rep	CDS	10789832	10789925	.	-	2	Parent=Os05t0268500-03
Chr05	irgsp1_rep	CDS	10789655	10789739	.	-	1	Parent=Os05t0268500-03
Chr05	irgsp1_rep	CDS	10789053	10789331	.	-	0	Parent=Os05t0268500-03
Chr05	irgsp1_rep	CDS	10788757	10788884	.	-	0	Parent=Os05t0268500-03
Chr05	irgsp1_rep	CDS	10787473	10787568	.	-	1	Parent=Os05t0268500-03
Chr05	irgsp1_rep	CDS	10781534	10781675	.	-	1	Parent=Os05t0268500-03
Chr05	irgsp1_rep	three_prime_UTR	10781341	10781533	.	-	.	Parent=Os05t0268500-03
Chr05	irgsp1_rep	mRNA	10789743	10790671	.	-	.	ID=Os05t0268500-04;Name=Os05t0268500-04;Locus_id=Os05g0268500;CGSNL Gene Symbol=SCP27;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 27;Oryzabase Gene Symbol Synonym(s)=OsEnS-75%2C OsSCP27%2C OsSCP28%2C SCP28;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 75%2C Serine carboxypeptidase 27%2C Serine carboxypeptidase 28;Note=Similar to Serine carboxypeptidase 2.;Transcript_evidence=AK119979 (DDBJ%2C Best hit);ORF_evidence=P08819 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=002-184-F05;Oryzabase=18393;Expression=AK119979;TENOR=Os05t0268500-04;KEGG=Os05t0268500-04 (EC:3.4.16.5)
Chr05	irgsp1_rep	five_prime_UTR	10790624	10790671	.	-	.	Parent=Os05t0268500-04
Chr05	irgsp1_rep	CDS	10790224	10790623	.	-	0	Parent=Os05t0268500-04
Chr05	irgsp1_rep	CDS	10790020	10790115	.	-	2	Parent=Os05t0268500-04
Chr05	irgsp1_rep	CDS	10789762	10789925	.	-	2	Parent=Os05t0268500-04
Chr05	irgsp1_rep	three_prime_UTR	10789743	10789761	.	-	.	Parent=Os05t0268500-04
Chr05	irgsp1_rep	mRNA	10799775	10803543	.	-	.	ID=Os05t0269000-01;Name=Os05t0269000-01;Locus_id=Os05g0269000;Note=Hypothetical conserved gene.;Transcript_evidence=AK241462 (DDBJ%2C Best hit);ORF_evidence=B9FNK1 (UniProt);NIAS_FLcDNA=J065164H13;TENOR=Os05t0269000-01;KEGG=Os05t0269000-01
Chr05	irgsp1_rep	five_prime_UTR	10803197	10803543	.	-	.	Parent=Os05t0269000-01
Chr05	irgsp1_rep	CDS	10802909	10803196	.	-	0	Parent=Os05t0269000-01
Chr05	irgsp1_rep	three_prime_UTR	10802837	10802908	.	-	.	Parent=Os05t0269000-01
Chr05	irgsp1_rep	three_prime_UTR	10802663	10802755	.	-	.	Parent=Os05t0269000-01
Chr05	irgsp1_rep	three_prime_UTR	10802191	10802343	.	-	.	Parent=Os05t0269000-01
Chr05	irgsp1_rep	three_prime_UTR	10802049	10802101	.	-	.	Parent=Os05t0269000-01
Chr05	irgsp1_rep	three_prime_UTR	10801079	10801139	.	-	.	Parent=Os05t0269000-01
Chr05	irgsp1_rep	three_prime_UTR	10800585	10800693	.	-	.	Parent=Os05t0269000-01
Chr05	irgsp1_rep	three_prime_UTR	10800408	10800493	.	-	.	Parent=Os05t0269000-01
Chr05	irgsp1_rep	three_prime_UTR	10799775	10799960	.	-	.	Parent=Os05t0269000-01
Chr05	irgsp1_rep	mRNA	10804153	10807173	.	-	.	ID=Os05t0269100-01;Name=Os05t0269100-01;Locus_id=Os05g0269100;Oryzabase Gene Symbol Synonym(s)=OsFbox254%2C Os_F0290;Oryzabase Gene Name Synonym(s)=F-box protein 254;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK066309 (DDBJ%2C Best hit);ORF_evidence=A2Y2K4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Domain of unknown function DUF1618 (IPR011676),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013063M11;Oryzabase=17038;Expression=AK066309;TENOR=Os05t0269100-01;KEGG=Os05t0269100-01
Chr05	irgsp1_rep	five_prime_UTR	10806834	10807173	.	-	.	Parent=Os05t0269100-01
Chr05	irgsp1_rep	five_prime_UTR	10805777	10805803	.	-	.	Parent=Os05t0269100-01
Chr05	irgsp1_rep	CDS	10804582	10805776	.	-	0	Parent=Os05t0269100-01
Chr05	irgsp1_rep	CDS	10804383	10804483	.	-	2	Parent=Os05t0269100-01
Chr05	irgsp1_rep	three_prime_UTR	10804153	10804382	.	-	.	Parent=Os05t0269100-01
Chr05	irgsp1_rep	mRNA	10814438	10816932	.	-	.	ID=Os05t0269200-00;Name=Os05t0269200-00;Locus_id=Os05g0269200;Oryzabase Gene Symbol Synonym(s)=SLAC;Oryzabase Gene Name Synonym(s)=SLOW ANION CHANNEL;Note=Similar to inner membrane transport protein.;Transcript_evidence=CT836417 (DDBJ%2C Best hit);ORF_evidence=NP_001147344.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=C4-dicarboxylate transporter/malic acid transport protein (IPR004695);Oryzabase=21760;TENOR=Os05t0269200-00;KEGG=Os05t0269200-00
Chr05	irgsp1_rep	five_prime_UTR	10816925	10816932	.	-	.	Parent=Os05t0269200-00
Chr05	irgsp1_rep	CDS	10816043	10816924	.	-	0	Parent=Os05t0269200-00
Chr05	irgsp1_rep	CDS	10814606	10814923	.	-	0	Parent=Os05t0269200-00
Chr05	irgsp1_rep	three_prime_UTR	10814438	10814605	.	-	.	Parent=Os05t0269200-00
Chr05	irgsp1_rep	mRNA	10847834	10854702	.	-	.	ID=Os05t0269500-01;Name=Os05t0269500-01;Locus_id=Os05g0269500;RAP-DB Gene Symbol Synonym(s)=OsGCS1%2C HAP2;RAP-DB Gene Name Synonym(s)=GENERATIVE CELL SPECIFIC1%2C HAPLESS2;Note=HAP2-GCS1 domain containing protein;Transcript_evidence=AK072871;ORF_evidence=Q5W6B9;InterPro=Generative cell specific-1/HAP2 domain (IPR018928);NIAS_FLcDNA=J023143F18;Manual Curation=October 29%2C 2020;Literature_PMID=33110160,20333238;Expression=AK072871;TENOR=Os05t0269500-01;KEGG=Os05t0269500-01
Chr05	irgsp1_rep	five_prime_UTR	10854651	10854702	.	-	.	Parent=Os05t0269500-01
Chr05	irgsp1_rep	CDS	10854465	10854650	.	-	0	Parent=Os05t0269500-01
Chr05	irgsp1_rep	CDS	10854200	10854352	.	-	0	Parent=Os05t0269500-01
Chr05	irgsp1_rep	CDS	10854015	10854103	.	-	0	Parent=Os05t0269500-01
Chr05	irgsp1_rep	CDS	10853494	10853533	.	-	1	Parent=Os05t0269500-01
Chr05	irgsp1_rep	CDS	10852726	10852780	.	-	0	Parent=Os05t0269500-01
Chr05	irgsp1_rep	CDS	10852584	10852644	.	-	2	Parent=Os05t0269500-01
Chr05	irgsp1_rep	CDS	10852117	10852195	.	-	1	Parent=Os05t0269500-01
Chr05	irgsp1_rep	CDS	10851702	10851836	.	-	0	Parent=Os05t0269500-01
Chr05	irgsp1_rep	CDS	10851401	10851598	.	-	0	Parent=Os05t0269500-01
Chr05	irgsp1_rep	CDS	10850651	10850731	.	-	0	Parent=Os05t0269500-01
Chr05	irgsp1_rep	CDS	10850475	10850575	.	-	0	Parent=Os05t0269500-01
Chr05	irgsp1_rep	CDS	10850099	10850216	.	-	1	Parent=Os05t0269500-01
Chr05	irgsp1_rep	CDS	10849922	10849954	.	-	0	Parent=Os05t0269500-01
Chr05	irgsp1_rep	CDS	10849472	10849565	.	-	0	Parent=Os05t0269500-01
Chr05	irgsp1_rep	CDS	10849299	10849387	.	-	2	Parent=Os05t0269500-01
Chr05	irgsp1_rep	CDS	10848842	10848939	.	-	0	Parent=Os05t0269500-01
Chr05	irgsp1_rep	CDS	10848591	10848679	.	-	1	Parent=Os05t0269500-01
Chr05	irgsp1_rep	CDS	10848014	10848483	.	-	2	Parent=Os05t0269500-01
Chr05	irgsp1_rep	three_prime_UTR	10847834	10848013	.	-	.	Parent=Os05t0269500-01
Chr05	irgsp1_rep	mRNA	10865367	10869233	.	+	.	ID=Os05t0270000-01;Name=Os05t0270000-01;Locus_id=Os05g0270000;Note=Ribosomal protein L25 family protein.;Transcript_evidence=AK072793 (DDBJ%2C Best hit);ORF_evidence=NP_194093.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735),Molecular Function: 5S rRNA binding (GO:0008097);InterPro=Ribosomal protein L25/Gln-tRNA synthetase%2C anti-codon-binding domain (IPR011035),Ribosomal protein L25%2C short-form (IPR020055),Ribosomal protein L25/Gln-tRNA synthetase%2C beta-barrel domain (IPR020056),Ribosomal protein L25%2C beta domain (IPR020057);NIAS_FLcDNA=J023137E11;Expression=AK072793;TENOR=Os05t0270000-01;KEGG=Os05t0270000-01
Chr05	irgsp1_rep	five_prime_UTR	10865367	10865425	.	+	.	Parent=Os05t0270000-01
Chr05	irgsp1_rep	CDS	10865426	10865872	.	+	0	Parent=Os05t0270000-01
Chr05	irgsp1_rep	CDS	10866803	10866932	.	+	0	Parent=Os05t0270000-01
Chr05	irgsp1_rep	CDS	10868850	10869070	.	+	2	Parent=Os05t0270000-01
Chr05	irgsp1_rep	three_prime_UTR	10869071	10869233	.	+	.	Parent=Os05t0270000-01
Chr05	irgsp1_rep	mRNA	10883466	10886687	.	-	.	ID=Os05t0270200-01;Name=Os05t0270200-01;Locus_id=Os05g0270200;RAP-DB Gene Symbol Synonym(s)=OsSUN1;RAP-DB Gene Name Synonym(s)=Sad1/UNC-84 (SUN) domain protein 1;Oryzabase Gene Symbol Synonym(s)=OsSAD1%2C SAD1%2C OsSUN2%2C SUN2;Oryzabase Gene Name Synonym(s)=SUN (Sad1/UNC-84) domain-containing protein 2%2C SUN domain-containing protein 2%2C SUN protein 2;Note=Sad1/UNC-84 (SUN) domain protein%2C Promotion of telomere clustering and homologous pairing in meiosis;Transcript_evidence=AK065530;ORF_evidence=Q0DJK2;InterPro=Galactose-binding-like domain superfamily (IPR008979),SUN domain (IPR012919);NIAS_FLcDNA=J013034C21;Manual Curation=June 24%2C 2020;Literature_PMID=32554471;Oryzabase=16050;TENOR=Os05t0270200-01;Subcellular location=nuclear envelope (GO:0005635)
Chr05	irgsp1_rep	five_prime_UTR	10886540	10886687	.	-	.	Parent=Os05t0270200-01
Chr05	irgsp1_rep	five_prime_UTR	10886128	10886189	.	-	.	Parent=Os05t0270200-01
Chr05	irgsp1_rep	CDS	10885051	10886127	.	-	0	Parent=Os05t0270200-01
Chr05	irgsp1_rep	CDS	10883816	10884100	.	-	0	Parent=Os05t0270200-01
Chr05	irgsp1_rep	three_prime_UTR	10883466	10883815	.	-	.	Parent=Os05t0270200-01
Chr05	irgsp1_rep	mRNA	10899718	10900793	.	+	.	ID=Os05t0270400-01;Name=Os05t0270400-01;Locus_id=Os05g0270400;Note=Protein phosphatase inhibitor family protein.;Transcript_evidence=AK121231 (DDBJ%2C Best hit);ORF_evidence=A2Q5P6 (UniProt);InterPro=Protein phosphatase inhibitor (IPR011107);NIAS_FLcDNA=J023092L21;Expression=AK121231;TENOR=Os05t0270400-01;KEGG=Os05t0270400-01
Chr05	irgsp1_rep	five_prime_UTR	10899718	10899779	.	+	.	Parent=Os05t0270400-01
Chr05	irgsp1_rep	CDS	10899780	10900157	.	+	0	Parent=Os05t0270400-01
Chr05	irgsp1_rep	three_prime_UTR	10900158	10900184	.	+	.	Parent=Os05t0270400-01
Chr05	irgsp1_rep	three_prime_UTR	10900544	10900793	.	+	.	Parent=Os05t0270400-01
Chr05	irgsp1_rep	mRNA	10902163	10904608	.	-	.	ID=Os05t0270500-01;Name=Os05t0270500-01;Locus_id=Os05g0270500;Oryzabase Gene Symbol Synonym(s)=OsRPP14.1%2C RPP14.1;Oryzabase Gene Name Synonym(s)=RPP14-family protein 1;Note=Similar to predicted protein.;Transcript_evidence=AK241458 (DDBJ%2C Best hit);ORF_evidence=NP_683274.1 (RefSeq);GO=Biological Process: tRNA processing (GO:0008033),Molecular Function: ribonuclease activity (GO:0004540);InterPro=Ribonuclease P/MRP protein subunit (IPR002759);NIAS_FLcDNA=J065164D11;Oryzabase=20392;TENOR=Os05t0270500-01;KEGG=Os05t0270500-01
Chr05	irgsp1_rep	five_prime_UTR	10903914	10904608	.	-	.	Parent=Os05t0270500-01
Chr05	irgsp1_rep	CDS	10903739	10903913	.	-	0	Parent=Os05t0270500-01
Chr05	irgsp1_rep	CDS	10903492	10903629	.	-	2	Parent=Os05t0270500-01
Chr05	irgsp1_rep	CDS	10902343	10902476	.	-	2	Parent=Os05t0270500-01
Chr05	irgsp1_rep	three_prime_UTR	10902163	10902342	.	-	.	Parent=Os05t0270500-01
Chr05	irgsp1_rep	mRNA	10914088	10916007	.	+	.	ID=Os05t0270800-00;Name=Os05t0270800-00;Locus_id=Os05g0270800;CGSNL Gene Symbol=GARS;CGSNL Gene Name=GAR SYNTHETASE;Oryzabase Gene Symbol Synonym(s)=OsGARS;Oryzabase Gene Name Synonym(s)=GAR synthetase;Note=Similar to glycinamide ribonucleotide transformylase.;Transcript_evidence=ab initio prediction;ORF_evidence=XP_002334132.1 (RefSeq);GO=Biological Process: 'de novo' IMP biosynthetic process (GO:0006189),Biological Process: biosynthetic process (GO:0009058),Molecular Function: phosphoribosylglycinamide formyltransferase activity (GO:0004644),Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: hydroxymethyl-%2C formyl- and related transferase activity (GO:0016742);InterPro=Phosphoribosylglycinamide formyltransferase%2C active site (IPR001555),Formyl transferase%2C N-terminal (IPR002376),Phosphoribosylglycinamide formyltransferase (IPR004607);Oryzabase=22923;TENOR=Os05t0270800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	10914088	10914169	.	+	0	Parent=Os05t0270800-00
Chr05	irgsp1_rep	CDS	10914222	10914425	.	+	2	Parent=Os05t0270800-00
Chr05	irgsp1_rep	CDS	10914529	10914640	.	+	2	Parent=Os05t0270800-00
Chr05	irgsp1_rep	CDS	10915266	10915442	.	+	1	Parent=Os05t0270800-00
Chr05	irgsp1_rep	CDS	10915652	10915778	.	+	1	Parent=Os05t0270800-00
Chr05	irgsp1_rep	CDS	10915894	10916007	.	+	0	Parent=Os05t0270800-00
Chr05	irgsp1_rep	mRNA	10914349	10916211	.	-	.	ID=Os05t0270850-01;Name=Os05t0270850-01;Locus_id=Os05g0270850;Note=Hypothetical gene.;Transcript_evidence=AK288891 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090080B17;TENOR=Os05t0270850-01
Chr05	irgsp1_rep	five_prime_UTR	10914671	10916211	.	-	.	Parent=Os05t0270850-01
Chr05	irgsp1_rep	CDS	10914349	10914670	.	-	0	Parent=Os05t0270850-01
Chr05	irgsp1_rep	mRNA	10917468	10918251	.	-	.	ID=Os05t0270875-00;Name=Os05t0270875-00;Locus_id=Os05g0270875;Note=Similar to J013100G02%2C full insert sequence.;Transcript_evidence=EU976182 (DDBJ);ORF_evidence=B7EDE1 (UniProt);TENOR=Os05t0270875-00
Chr05	irgsp1_rep	five_prime_UTR	10917810	10918251	.	-	.	Parent=Os05t0270875-00
Chr05	irgsp1_rep	CDS	10917468	10917809	.	-	0	Parent=Os05t0270875-00
Chr05	irgsp1_rep	mRNA	10945629	10947989	.	+	.	ID=Os05t0271300-00;Name=Os05t0271300-00;Locus_id=Os05g0271300;Note=Hypothetical conserved gene.;Transcript_evidence=Q6ATG6 (UniProt);ORF_evidence=Q6ATG6 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Cellular Component: intracellular (GO:0005622),Molecular Function: RNA binding (GO:0003723),Molecular Function: double-stranded RNA binding (GO:0003725),Molecular Function: ribonuclease III activity (GO:0004525);InterPro=Ribonuclease III (IPR000999),Double-stranded RNA-binding (IPR001159),Double-stranded RNA-binding-like (IPR014720);TENOR=Os05t0271300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	10945629	10946039	.	+	0	Parent=Os05t0271300-00
Chr05	irgsp1_rep	CDS	10947085	10947252	.	+	0	Parent=Os05t0271300-00
Chr05	irgsp1_rep	CDS	10947615	10947989	.	+	0	Parent=Os05t0271300-00
Chr05	irgsp1_rep	mRNA	11000428	11002069	.	+	.	ID=Os05t0271900-01;Name=Os05t0271900-01;Locus_id=Os05g0271900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK102630 (DDBJ%2C Best hit),AK073049 (DDBJ%2C Best hit);ORF_evidence=B9FNL0 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J033099L09,J033005C04;TENOR=Os05t0271900-01
Chr05	irgsp1_rep	five_prime_UTR	11000428	11000490	.	+	.	Parent=Os05t0271900-01
Chr05	irgsp1_rep	CDS	11000491	11001957	.	+	0	Parent=Os05t0271900-01
Chr05	irgsp1_rep	three_prime_UTR	11001958	11002069	.	+	.	Parent=Os05t0271900-01
Chr05	irgsp1_rep	mRNA	11025818	11027867	.	+	.	ID=Os05t0272200-00;Name=Os05t0272200-00;Locus_id=Os05g0272200;Note=Similar to F20D23.27 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q9SHG2 (UniProt);TENOR=Os05t0272200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	11025818	11025929	.	+	0	Parent=Os05t0272200-00
Chr05	irgsp1_rep	CDS	11026107	11026720	.	+	2	Parent=Os05t0272200-00
Chr05	irgsp1_rep	CDS	11027086	11027601	.	+	0	Parent=Os05t0272200-00
Chr05	irgsp1_rep	CDS	11027739	11027867	.	+	0	Parent=Os05t0272200-00
Chr05	irgsp1_rep	mRNA	11029412	11029845	.	-	.	ID=Os05t0272300-00;Name=Os05t0272300-00;Locus_id=Os05g0272300;Note=NmrA-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001041775.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NmrA-like (IPR008030),NAD(P)-binding domain (IPR016040);TENOR=Os05t0272300-00
Chr05	irgsp1_rep	CDS	11029746	11029845	.	-	0	Parent=Os05t0272300-00
Chr05	irgsp1_rep	CDS	11029412	11029599	.	-	2	Parent=Os05t0272300-00
Chr05	irgsp1_rep	mRNA	11029143	11029918	.	+	.	ID=Os05t0272400-01;Name=Os05t0272400-01;Locus_id=Os05g0272400;Note=Hypothetical protein.;Transcript_evidence=AK110636 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-169-C04;Expression=AK110636;TENOR=Os05t0272400-01;KEGG=Os05t0272400-01
Chr05	irgsp1_rep	five_prime_UTR	11029143	11029232	.	+	.	Parent=Os05t0272400-01
Chr05	irgsp1_rep	CDS	11029233	11029616	.	+	0	Parent=Os05t0272400-01
Chr05	irgsp1_rep	three_prime_UTR	11029617	11029918	.	+	.	Parent=Os05t0272400-01
Chr05	irgsp1_rep	mRNA	11036281	11036334	.	+	.	ID=Os05t0272632-00;Name=Os05t0272632-00;Locus_id=Os05g0272632;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0272632-00
Chr05	irgsp1_rep	exon	11036281	11036334	.	+	.	Parent=Os05t0272632-00
Chr05	irgsp1_rep	mRNA	11042638	11045689	.	+	.	ID=Os05t0272800-01;Name=Os05t0272800-01;Locus_id=Os05g0272800;Oryzabase Gene Name Synonym(s)=(Hypothetical protein);Note=Similar to F20D23.27 protein.;Transcript_evidence=AK068945 (DDBJ%2C Best hit);ORF_evidence=Q9SHG2 (UniProt);NIAS_FLcDNA=J013170M23;Oryzabase=19106;Expression=AK068945;TENOR=Os05t0272800-01;KEGG=Os05t0272800-01
Chr05	irgsp1_rep	five_prime_UTR	11042638	11042725	.	+	.	Parent=Os05t0272800-01
Chr05	irgsp1_rep	CDS	11042726	11042975	.	+	0	Parent=Os05t0272800-01
Chr05	irgsp1_rep	CDS	11043086	11043708	.	+	2	Parent=Os05t0272800-01
Chr05	irgsp1_rep	CDS	11044664	11045179	.	+	0	Parent=Os05t0272800-01
Chr05	irgsp1_rep	CDS	11045448	11045618	.	+	0	Parent=Os05t0272800-01
Chr05	irgsp1_rep	three_prime_UTR	11045619	11045689	.	+	.	Parent=Os05t0272800-01
Chr05	irgsp1_rep	mRNA	11049202	11052426	.	-	.	ID=Os05t0272900-01;Name=Os05t0272900-01;Locus_id=Os05g0272900;Note=B-cell receptor-associated 31-like family protein.;Transcript_evidence=AK107093 (DDBJ%2C Best hit);ORF_evidence=B6TG43 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Cellular Component: endoplasmic reticulum (GO:0005783),Cellular Component: integral to membrane (GO:0016021);InterPro=B-cell receptor-associated 31-like (IPR008417);NIAS_FLcDNA=002-121-H04;Expression=AK107093;TENOR=Os05t0272900-01;KEGG=Os05t0272900-01
Chr05	irgsp1_rep	five_prime_UTR	11052080	11052426	.	-	.	Parent=Os05t0272900-01
Chr05	irgsp1_rep	CDS	11051797	11052079	.	-	0	Parent=Os05t0272900-01
Chr05	irgsp1_rep	CDS	11049319	11049701	.	-	2	Parent=Os05t0272900-01
Chr05	irgsp1_rep	three_prime_UTR	11049202	11049318	.	-	.	Parent=Os05t0272900-01
Chr05	irgsp1_rep	mRNA	11087660	11090384	.	+	.	ID=Os05t0273500-01;Name=Os05t0273500-01;Locus_id=Os05g0273500;Note=Conserved hypothetical protein.;Transcript_evidence=AK066374 (DDBJ%2C Best hit);ORF_evidence=B8AW21 (UniProt);NIAS_FLcDNA=J013060C14;Expression=AK066374;TENOR=Os05t0273500-01;KEGG=Os05t0273500-01
Chr05	irgsp1_rep	five_prime_UTR	11087660	11087803	.	+	.	Parent=Os05t0273500-01
Chr05	irgsp1_rep	CDS	11087804	11089324	.	+	0	Parent=Os05t0273500-01
Chr05	irgsp1_rep	CDS	11089431	11089529	.	+	0	Parent=Os05t0273500-01
Chr05	irgsp1_rep	three_prime_UTR	11089530	11089535	.	+	.	Parent=Os05t0273500-01
Chr05	irgsp1_rep	three_prime_UTR	11090084	11090384	.	+	.	Parent=Os05t0273500-01
Chr05	irgsp1_rep	mRNA	11114550	11116305	.	-	.	ID=Os05t0273800-01;Name=Os05t0273800-01;Locus_id=Os05g0273800;Note=Similar to Soluble epoxide hydrolase.;Transcript_evidence=AK060563 (DDBJ%2C Best hit);ORF_evidence=D8L7V7 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Alpha/beta hydrolase fold-1 (IPR000073),Epoxide hydrolase-like (IPR000639);NIAS_FLcDNA=001-022-G09;Expression=AK060563;TENOR=Os05t0273800-01;KEGG=Os05t0273800-01
Chr05	irgsp1_rep	five_prime_UTR	11116234	11116305	.	-	.	Parent=Os05t0273800-01
Chr05	irgsp1_rep	CDS	11115733	11116233	.	-	0	Parent=Os05t0273800-01
Chr05	irgsp1_rep	CDS	11115424	11115659	.	-	0	Parent=Os05t0273800-01
Chr05	irgsp1_rep	CDS	11114697	11114955	.	-	1	Parent=Os05t0273800-01
Chr05	irgsp1_rep	three_prime_UTR	11114550	11114696	.	-	.	Parent=Os05t0273800-01
Chr05	irgsp1_rep	mRNA	11189467	11198038	.	+	.	ID=Os05t0274200-01;Name=Os05t0274200-01;Locus_id=Os05g0274200;Oryzabase Gene Name Synonym(s)=DNA mismatch repair protein;Note=DNA mismatch repair protein MSH2 (MUS1).;Transcript_evidence=AK240706 (DDBJ%2C Best hit);ORF_evidence=NP_001146301.1 (RefSeq);GO=Biological Process: mismatch repair (GO:0006298),Cellular Component: MutSalpha complex (GO:0032301),Cellular Component: MutSbeta complex (GO:0032302),Molecular Function: ATP binding (GO:0005524),Molecular Function: mismatched DNA binding (GO:0030983);InterPro=DNA mismatch repair protein MutS%2C C-terminal (IPR000432),DNA mismatch repair protein MutS-like%2C N-terminal (IPR007695),DNA mismatch repair protein MutS%2C core (IPR007696),DNA mismatch repair protein MutS%2C connector (IPR007860),DNA mismatch repair protein MutS%2C clamp (IPR007861),DNA mismatch repair protein%2C MSH2 (IPR011184);NIAS_FLcDNA=J043020D22;Oryzabase=22690;TENOR=Os05t0274200-01;KEGG=Os05t0274200-01
Chr05	irgsp1_rep	five_prime_UTR	11189467	11189598	.	+	.	Parent=Os05t0274200-01
Chr05	irgsp1_rep	CDS	11189599	11189653	.	+	0	Parent=Os05t0274200-01
Chr05	irgsp1_rep	CDS	11189729	11189778	.	+	2	Parent=Os05t0274200-01
Chr05	irgsp1_rep	CDS	11189893	11189925	.	+	0	Parent=Os05t0274200-01
Chr05	irgsp1_rep	CDS	11190964	11192037	.	+	0	Parent=Os05t0274200-01
Chr05	irgsp1_rep	CDS	11192608	11193159	.	+	0	Parent=Os05t0274200-01
Chr05	irgsp1_rep	CDS	11193246	11193356	.	+	0	Parent=Os05t0274200-01
Chr05	irgsp1_rep	CDS	11193445	11193534	.	+	0	Parent=Os05t0274200-01
Chr05	irgsp1_rep	CDS	11193614	11193685	.	+	0	Parent=Os05t0274200-01
Chr05	irgsp1_rep	CDS	11194406	11194516	.	+	0	Parent=Os05t0274200-01
Chr05	irgsp1_rep	CDS	11195449	11195575	.	+	0	Parent=Os05t0274200-01
Chr05	irgsp1_rep	CDS	11195968	11196167	.	+	2	Parent=Os05t0274200-01
Chr05	irgsp1_rep	CDS	11197029	11197181	.	+	0	Parent=Os05t0274200-01
Chr05	irgsp1_rep	CDS	11197497	11197697	.	+	0	Parent=Os05t0274200-01
Chr05	irgsp1_rep	three_prime_UTR	11197698	11198038	.	+	.	Parent=Os05t0274200-01
Chr05	irgsp1_rep	mRNA	11200391	11206218	.	+	.	ID=Os05t0274300-01;Name=Os05t0274300-01;Locus_id=Os05g0274300;Note=Similar to ATP binding protein.;Transcript_evidence=AK071399 (DDBJ%2C Best hit);ORF_evidence=NP_001150449.1 (RefSeq);NIAS_FLcDNA=J023095N13;Expression=AK071399;TENOR=Os05t0274300-01;KEGG=Os05t0274300-01
Chr05	irgsp1_rep	five_prime_UTR	11200391	11200445	.	+	.	Parent=Os05t0274300-01
Chr05	irgsp1_rep	CDS	11200446	11200521	.	+	0	Parent=Os05t0274300-01
Chr05	irgsp1_rep	CDS	11200607	11200754	.	+	2	Parent=Os05t0274300-01
Chr05	irgsp1_rep	CDS	11201735	11201922	.	+	1	Parent=Os05t0274300-01
Chr05	irgsp1_rep	CDS	11202011	11202182	.	+	2	Parent=Os05t0274300-01
Chr05	irgsp1_rep	CDS	11203000	11203202	.	+	1	Parent=Os05t0274300-01
Chr05	irgsp1_rep	CDS	11204003	11204125	.	+	2	Parent=Os05t0274300-01
Chr05	irgsp1_rep	CDS	11204201	11204304	.	+	2	Parent=Os05t0274300-01
Chr05	irgsp1_rep	CDS	11205942	11206076	.	+	0	Parent=Os05t0274300-01
Chr05	irgsp1_rep	three_prime_UTR	11206077	11206218	.	+	.	Parent=Os05t0274300-01
Chr05	irgsp1_rep	mRNA	11248540	11250013	.	+	.	ID=Os05t0274900-00;Name=Os05t0274900-00;Locus_id=Os05g0274900;Note=Similar to 60S ribosomal protein L15-1.;Transcript_evidence=O23515 (UniProt);ORF_evidence=O23515 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L15e (IPR000439),Ribosomal protein L23/L15e (IPR012678),Ribosomal protein L15e%2C conserved site (IPR020925);TENOR=Os05t0274900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	11248540	11248710	.	+	0	Parent=Os05t0274900-00
Chr05	irgsp1_rep	CDS	11249477	11249674	.	+	0	Parent=Os05t0274900-00
Chr05	irgsp1_rep	CDS	11249768	11250013	.	+	0	Parent=Os05t0274900-00
Chr05	irgsp1_rep	mRNA	11252091	11253503	.	-	.	ID=Os05t0274950-00;Name=Os05t0274950-00;Locus_id=Os05g0274950;Note=Similar to homogentisate phytyltransferase VTE2-1.;Transcript_evidence=HM212530 (DDBJ);ORF_evidence=NP_001105877.1 (RefSeq);TENOR=Os05t0274950-00
Chr05	irgsp1_rep	CDS	11253418	11253503	.	-	0	Parent=Os05t0274950-00
Chr05	irgsp1_rep	CDS	11252715	11252795	.	-	1	Parent=Os05t0274950-00
Chr05	irgsp1_rep	CDS	11252219	11252231	.	-	1	Parent=Os05t0274950-00
Chr05	irgsp1_rep	three_prime_UTR	11252091	11252218	.	-	.	Parent=Os05t0274950-00
Chr05	irgsp1_rep	mRNA	11253553	11256527	.	-	.	ID=Os05t0275000-01;Name=Os05t0275000-01;Locus_id=Os05g0275000;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK067135 (DDBJ%2C Best hit);ORF_evidence=NP_001157212.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013094C24;Expression=AK067135;TENOR=Os05t0275000-01;KEGG=Os05t0275000-01
Chr05	irgsp1_rep	five_prime_UTR	11256454	11256527	.	-	.	Parent=Os05t0275000-01
Chr05	irgsp1_rep	CDS	11254072	11256453	.	-	0	Parent=Os05t0275000-01
Chr05	irgsp1_rep	three_prime_UTR	11253553	11254071	.	-	.	Parent=Os05t0275000-01
Chr05	irgsp1_rep	mRNA	11261810	11264629	.	-	.	ID=Os05t0275100-00;Name=Os05t0275100-00;Locus_id=Os05g0275100;Oryzabase Gene Symbol Synonym(s)=OsPPR920;Oryzabase Gene Name Synonym(s)=pentatricopeptide repeat protein 920;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FNL7 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);Oryzabase=14363;TENOR=Os05t0275100-00;KEGG=Os05t0275100-00
Chr05	irgsp1_rep	CDS	11261810	11264629	.	-	0	Parent=Os05t0275100-00
Chr05	irgsp1_rep	mRNA	11314367	11316108	.	+	.	ID=Os05t0275600-01;Name=Os05t0275600-01;Locus_id=Os05g0275600;Note=Conserved hypothetical protein.;Transcript_evidence=AK108098 (DDBJ%2C Best hit);ORF_evidence=XP_002464690.1 (RefSeq);NIAS_FLcDNA=002-139-A10;TENOR=Os05t0275600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	11314367	11314511	.	+	.	Parent=Os05t0275600-01
Chr05	irgsp1_rep	five_prime_UTR	11315212	11315218	.	+	.	Parent=Os05t0275600-01
Chr05	irgsp1_rep	CDS	11315219	11315557	.	+	0	Parent=Os05t0275600-01
Chr05	irgsp1_rep	three_prime_UTR	11315558	11316108	.	+	.	Parent=Os05t0275600-01
Chr05	irgsp1_rep	mRNA	11314396	11319936	.	+	.	ID=Os05t0275600-02;Name=Os05t0275600-02;Locus_id=Os05g0275600;Note=Conserved hypothetical protein.;Transcript_evidence=AK069275 (DDBJ%2C Best hit);ORF_evidence=B9FNL8 (UniProt);NIAS_FLcDNA=J023015J02;Expression=AK069275;TENOR=Os05t0275600-02;KEGG=Os05t0275600-02
Chr05	irgsp1_rep	five_prime_UTR	11314396	11314448	.	+	.	Parent=Os05t0275600-02
Chr05	irgsp1_rep	CDS	11314449	11314511	.	+	0	Parent=Os05t0275600-02
Chr05	irgsp1_rep	CDS	11316867	11317029	.	+	0	Parent=Os05t0275600-02
Chr05	irgsp1_rep	CDS	11318134	11318227	.	+	2	Parent=Os05t0275600-02
Chr05	irgsp1_rep	CDS	11318605	11318804	.	+	1	Parent=Os05t0275600-02
Chr05	irgsp1_rep	CDS	11319458	11319555	.	+	2	Parent=Os05t0275600-02
Chr05	irgsp1_rep	three_prime_UTR	11319556	11319576	.	+	.	Parent=Os05t0275600-02
Chr05	irgsp1_rep	three_prime_UTR	11319668	11319936	.	+	.	Parent=Os05t0275600-02
Chr05	irgsp1_rep	mRNA	11320504	11327124	.	-	.	ID=Os05t0275700-01;Name=Os05t0275700-01;Locus_id=Os05g0275700;Oryzabase Gene Symbol Synonym(s)=OsRFPHC-15;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPHC-15%2C RING-HC protein 15;Note=Similar to Peroxisome assembly protein 2 (Peroxin-2) (AthPEX2) (Pex2p).;Transcript_evidence=AK111642 (DDBJ%2C Best hit);ORF_evidence=B4FCL8 (UniProt);GO=Biological Process: peroxisome organization (GO:0007031),Cellular Component: peroxisomal membrane (GO:0005778),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Pex%2C N-terminal (IPR006845),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J013121E16;Oryzabase=11798;Expression=AK111642;TENOR=Os05t0275700-01;KEGG=Os05t0275700-01
Chr05	irgsp1_rep	five_prime_UTR	11326841	11327124	.	-	.	Parent=Os05t0275700-01
Chr05	irgsp1_rep	CDS	11326712	11326840	.	-	0	Parent=Os05t0275700-01
Chr05	irgsp1_rep	CDS	11326209	11326322	.	-	0	Parent=Os05t0275700-01
Chr05	irgsp1_rep	CDS	11325966	11326122	.	-	0	Parent=Os05t0275700-01
Chr05	irgsp1_rep	CDS	11323752	11323888	.	-	2	Parent=Os05t0275700-01
Chr05	irgsp1_rep	CDS	11323581	11323681	.	-	0	Parent=Os05t0275700-01
Chr05	irgsp1_rep	CDS	11323211	11323328	.	-	1	Parent=Os05t0275700-01
Chr05	irgsp1_rep	CDS	11321171	11321337	.	-	0	Parent=Os05t0275700-01
Chr05	irgsp1_rep	CDS	11320714	11320819	.	-	1	Parent=Os05t0275700-01
Chr05	irgsp1_rep	three_prime_UTR	11320504	11320713	.	-	.	Parent=Os05t0275700-01
Chr05	irgsp1_rep	mRNA	11335063	11337911	.	+	.	ID=Os05t0276100-01;Name=Os05t0276100-01;Locus_id=Os05g0276100;RAP-DB Gene Symbol Synonym(s)=OsCHX14;CGSNL Gene Symbol=CHX14;CGSNL Gene Name=CATION/H+ EXCHANGER  14;Oryzabase Gene Symbol Synonym(s)=OsCHX14;Oryzabase Gene Name Synonym(s)=cation/H+ exchanger  14;Note=Endoplasmic reticulum (ER) localized K+ transporter%2C K+ homeostasis during flowering;Transcript_evidence=AK069092;ORF_evidence=Q6ATD0;GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Molecular Function: solute:proton antiporter activity (GO:0015299),Cellular Component: integral component of membrane (GO:0016021);InterPro=Cation/H+ exchanger (IPR006153);NIAS_FLcDNA=J023007H06;Manual Curation=August 3%2C 2016;Literature_PMID=27903806;Oryzabase=22373;Expression=AK069092;TENOR=Os05t0276100-01;KEGG=Os05t0276100-01
Chr05	irgsp1_rep	five_prime_UTR	11335063	11335212	.	+	.	Parent=Os05t0276100-01
Chr05	irgsp1_rep	CDS	11335213	11335407	.	+	0	Parent=Os05t0276100-01
Chr05	irgsp1_rep	CDS	11335527	11337704	.	+	0	Parent=Os05t0276100-01
Chr05	irgsp1_rep	three_prime_UTR	11337705	11337911	.	+	.	Parent=Os05t0276100-01
Chr05	irgsp1_rep	mRNA	11393115	11394895	.	-	.	ID=Os05t0276500-01;Name=Os05t0276500-01;Locus_id=Os05g0276500;CGSNL Gene Symbol=EXPA3;CGSNL Gene Name=ALPHA-EXPANSIN 3;Oryzabase Gene Symbol Synonym(s)=OsEXP3 (Os-EXP3)%2C EXPA3%2C OsEXP3%2C Os-EXP3%2C OsaEXPa1.18%2C RiExD%2C Os-EXPA3%2C OsEXPA3;Oryzabase Gene Name Synonym(s)=Rice expansin-3%2C Expansin-A3%2C Alpha-expansin-3;Note=Expansin Os-EXPA3.;Transcript_evidence=AK060313 (DDBJ%2C Best hit);ORF_evidence=Q40637 (UniProt);GO=Biological Process: plant-type cell wall organization (GO:0009664),Cellular Component: extracellular region (GO:0005576);InterPro=Expansin (IPR002963),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);NIAS_FLcDNA=001-007-C10;Oryzabase=2966;Expression=AK060313;TENOR=Os05t0276500-01;KEGG=Os05t0276500-01
Chr05	irgsp1_rep	five_prime_UTR	11394830	11394895	.	-	.	Parent=Os05t0276500-01
Chr05	irgsp1_rep	CDS	11394694	11394829	.	-	0	Parent=Os05t0276500-01
Chr05	irgsp1_rep	CDS	11394273	11394594	.	-	2	Parent=Os05t0276500-01
Chr05	irgsp1_rep	CDS	11393382	11393691	.	-	1	Parent=Os05t0276500-01
Chr05	irgsp1_rep	three_prime_UTR	11393115	11393381	.	-	.	Parent=Os05t0276500-01
Chr05	irgsp1_rep	mRNA	11393416	11394546	.	+	.	ID=Os05t0276750-00;Name=Os05t0276750-00;Locus_id=Os05g0276750;Note=Hypothetical protein.;Transcript_evidence=BT016845 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0276750-00
Chr05	irgsp1_rep	five_prime_UTR	11393416	11393417	.	+	.	Parent=Os05t0276750-00
Chr05	irgsp1_rep	CDS	11393418	11393695	.	+	0	Parent=Os05t0276750-00
Chr05	irgsp1_rep	CDS	11394277	11394337	.	+	1	Parent=Os05t0276750-00
Chr05	irgsp1_rep	three_prime_UTR	11394338	11394546	.	+	.	Parent=Os05t0276750-00
Chr05	irgsp1_rep	mRNA	11418476	11419481	.	-	.	ID=Os05t0277000-00;Name=Os05t0277000-00;Locus_id=Os05g0277000;CGSNL Gene Symbol=EXPA33;CGSNL Gene Name=ALPHA-EXPANSIN 33;Oryzabase Gene Symbol Synonym(s)=OsEXPA33;Oryzabase Gene Name Synonym(s)=expansin A33;Note=Similar to Expansin Os-EXPA3.;Transcript_evidence=P0C1Y4 (UniProt);ORF_evidence=P0C1Y4 (UniProt);GO=Biological Process: plant-type cell wall organization (GO:0009664),Cellular Component: extracellular region (GO:0005576);InterPro=Expansin (IPR002963),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);Oryzabase=23597;TENOR=Os05t0277000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	11419361	11419481	.	-	0	Parent=Os05t0277000-00
Chr05	irgsp1_rep	CDS	11418929	11419247	.	-	2	Parent=Os05t0277000-00
Chr05	irgsp1_rep	CDS	11418476	11418782	.	-	1	Parent=Os05t0277000-00
Chr05	irgsp1_rep	mRNA	11418481	11419200	.	+	.	ID=Os05t0277100-00;Name=Os05t0277100-00;Locus_id=Os05g0277100;Note=Hypothetical protein.;Transcript_evidence=BT016845 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0277100-00
Chr05	irgsp1_rep	five_prime_UTR	11418481	11418481	.	+	.	Parent=Os05t0277100-00
Chr05	irgsp1_rep	CDS	11418482	11418793	.	+	0	Parent=Os05t0277100-00
Chr05	irgsp1_rep	CDS	11418940	11419200	.	+	0	Parent=Os05t0277100-00
Chr05	irgsp1_rep	mRNA	11434164	11435409	.	+	.	ID=Os05t0277200-01;Name=Os05t0277200-01;Locus_id=Os05g0277200;Note=Conserved hypothetical protein.;Transcript_evidence=AK110612 (DDBJ%2C Best hit);ORF_evidence=A2Y2P1 (UniProt);NIAS_FLcDNA=002-168-H05;Expression=AK110612;TENOR=Os05t0277200-01;KEGG=Os05t0277200-01
Chr05	irgsp1_rep	five_prime_UTR	11434164	11434184	.	+	.	Parent=Os05t0277200-01
Chr05	irgsp1_rep	CDS	11434185	11435039	.	+	0	Parent=Os05t0277200-01
Chr05	irgsp1_rep	three_prime_UTR	11435040	11435409	.	+	.	Parent=Os05t0277200-01
Chr05	irgsp1_rep	mRNA	11436336	11440534	.	-	.	ID=Os05t0277300-01;Name=Os05t0277300-01;Locus_id=Os05g0277300;Note=Similar to Peptide chain release factor 1.;Transcript_evidence=AK065607 (DDBJ%2C Best hit);ORF_evidence=B6U6C9 (UniProt);NIAS_FLcDNA=J013034H14;TENOR=Os05t0277300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	11439501	11440534	.	-	.	Parent=Os05t0277300-01
Chr05	irgsp1_rep	CDS	11439362	11439500	.	-	0	Parent=Os05t0277300-01
Chr05	irgsp1_rep	CDS	11439104	11439204	.	-	2	Parent=Os05t0277300-01
Chr05	irgsp1_rep	CDS	11438955	11438975	.	-	0	Parent=Os05t0277300-01
Chr05	irgsp1_rep	three_prime_UTR	11438605	11438954	.	-	.	Parent=Os05t0277300-01
Chr05	irgsp1_rep	three_prime_UTR	11438458	11438506	.	-	.	Parent=Os05t0277300-01
Chr05	irgsp1_rep	three_prime_UTR	11438288	11438366	.	-	.	Parent=Os05t0277300-01
Chr05	irgsp1_rep	three_prime_UTR	11438058	11438132	.	-	.	Parent=Os05t0277300-01
Chr05	irgsp1_rep	three_prime_UTR	11437891	11437968	.	-	.	Parent=Os05t0277300-01
Chr05	irgsp1_rep	three_prime_UTR	11436932	11437780	.	-	.	Parent=Os05t0277300-01
Chr05	irgsp1_rep	three_prime_UTR	11436336	11436855	.	-	.	Parent=Os05t0277300-01
Chr05	irgsp1_rep	mRNA	11436332	11439147	.	-	.	ID=Os05t0277300-02;Name=Os05t0277300-02;Locus_id=Os05g0277300;Note=Peptide chain release factor 1 family protein.;Transcript_evidence=AK058300 (DDBJ%2C Best hit);ORF_evidence=B6U6C9 (UniProt);GO=Biological Process: translational termination (GO:0006415),Cellular Component: cytoplasm (GO:0005737),Molecular Function: translation release factor activity (GO:0003747),Molecular Function: translation release factor activity%2C codon specific (GO:0016149);InterPro=Peptide chain release factor class I/class II (IPR000352),Peptide chain release factor 1 (IPR004373),Peptide chain release factor (IPR005139);NIAS_FLcDNA=001-013-F11;Expression=AK058300;TENOR=Os05t0277300-02;KEGG=Os05t0277300-02
Chr05	irgsp1_rep	five_prime_UTR	11439146	11439147	.	-	.	Parent=Os05t0277300-02
Chr05	irgsp1_rep	CDS	11439104	11439145	.	-	0	Parent=Os05t0277300-02
Chr05	irgsp1_rep	CDS	11438873	11438971	.	-	0	Parent=Os05t0277300-02
Chr05	irgsp1_rep	CDS	11438605	11438788	.	-	0	Parent=Os05t0277300-02
Chr05	irgsp1_rep	CDS	11438458	11438506	.	-	2	Parent=Os05t0277300-02
Chr05	irgsp1_rep	CDS	11438288	11438366	.	-	1	Parent=Os05t0277300-02
Chr05	irgsp1_rep	CDS	11438058	11438132	.	-	0	Parent=Os05t0277300-02
Chr05	irgsp1_rep	CDS	11437891	11437968	.	-	0	Parent=Os05t0277300-02
Chr05	irgsp1_rep	CDS	11437622	11437780	.	-	0	Parent=Os05t0277300-02
Chr05	irgsp1_rep	CDS	11436932	11437027	.	-	0	Parent=Os05t0277300-02
Chr05	irgsp1_rep	CDS	11436667	11436855	.	-	0	Parent=Os05t0277300-02
Chr05	irgsp1_rep	three_prime_UTR	11436332	11436666	.	-	.	Parent=Os05t0277300-02
Chr05	irgsp1_rep	mRNA	11436321	11436650	.	-	.	ID=Os05t0277300-03;Name=Os05t0277300-03;Locus_id=Os05g0277300;Note=Non-protein coding transcript.;Transcript_evidence=AK058493 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-016-E05;TENOR=Os05t0277300-03
Chr05	irgsp1_rep	exon	11436321	11436650	.	-	.	Parent=Os05t0277300-03
Chr05	irgsp1_rep	mRNA	11445519	11446265	.	+	.	ID=Os05t0277350-00;Name=Os05t0277350-00;Locus_id=Os05g0277350;Note=Similar to Leucine Rich Repeat family protein%2C expressed.;Transcript_evidence=EU968931 (DDBJ);ORF_evidence=Q2QMK5 (UniProt);TENOR=Os05t0277350-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	11445519	11445652	.	+	.	Parent=Os05t0277350-00
Chr05	irgsp1_rep	five_prime_UTR	11445762	11445903	.	+	.	Parent=Os05t0277350-00
Chr05	irgsp1_rep	CDS	11445904	11445914	.	+	0	Parent=Os05t0277350-00
Chr05	irgsp1_rep	CDS	11446064	11446265	.	+	1	Parent=Os05t0277350-00
Chr05	irgsp1_rep	mRNA	11467161	11468078	.	+	.	ID=Os05t0277500-01;Name=Os05t0277500-01;Locus_id=Os05g0277500;CGSNL Gene Symbol=GLP5-2;CGSNL Gene Name=GERMIN-LIKE PROTEIN 5-2;Oryzabase Gene Symbol Synonym(s)=OsGLP5-2%2C OsGLP5-1%2C GLP5-1;Oryzabase Gene Name Synonym(s)=Germin-like protein 5-2;Note=Similar to Germin-like protein subfamily 2 member 4 precursor.;Transcript_evidence=AK105351 (DDBJ%2C Best hit);ORF_evidence=NP_001151047.1 (RefSeq);GO=Cellular Component: apoplast (GO:0048046),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),Germin%2C manganese binding site (IPR019780);NIAS_FLcDNA=001-119-A07;Oryzabase=21428;Expression=AK105351;TENOR=Os05t0277500-01;KEGG=Os05t0277500-01
Chr05	irgsp1_rep	five_prime_UTR	11467161	11467189	.	+	.	Parent=Os05t0277500-01
Chr05	irgsp1_rep	CDS	11467190	11467313	.	+	0	Parent=Os05t0277500-01
Chr05	irgsp1_rep	CDS	11467392	11467933	.	+	2	Parent=Os05t0277500-01
Chr05	irgsp1_rep	three_prime_UTR	11467934	11468078	.	+	.	Parent=Os05t0277500-01
Chr05	irgsp1_rep	mRNA	11477750	11477806	.	-	.	ID=Os05t0278150-00;Name=Os05t0278150-00;Locus_id=Os05g0278150;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0278150-00
Chr05	irgsp1_rep	exon	11477750	11477806	.	-	.	Parent=Os05t0278150-00
Chr05	irgsp1_rep	mRNA	11609491	11615022	.	-	.	ID=Os05t0278500-01;Name=Os05t0278500-01;Locus_id=Os05g0278500;CGSNL Gene Symbol=AT5;CGSNL Gene Name=ACYLTRANSFERASE 5;Oryzabase Gene Symbol Synonym(s)=OsAT5%2C OsAt5%2C OsFMT1%2C FMT1;Oryzabase Gene Name Synonym(s)=acyltransferase 5%2C feruloyl-coenzyme A monolignol transferase 1;Note=Transferase family protein.;Transcript_evidence=AK067851 (DDBJ%2C Best hit);ORF_evidence=B6TZX2 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J013123P12;Oryzabase=11737;Expression=AK067851;TENOR=Os05t0278500-01;KEGG=Os05t0278500-01
Chr05	irgsp1_rep	five_prime_UTR	11614921	11615022	.	-	.	Parent=Os05t0278500-01
Chr05	irgsp1_rep	CDS	11614462	11614920	.	-	0	Parent=Os05t0278500-01
Chr05	irgsp1_rep	CDS	11609641	11610480	.	-	0	Parent=Os05t0278500-01
Chr05	irgsp1_rep	three_prime_UTR	11609491	11609640	.	-	.	Parent=Os05t0278500-01
Chr05	irgsp1_rep	mRNA	11614444	11615071	.	+	.	ID=Os05t0278550-00;Name=Os05t0278550-00;Locus_id=Os05g0278550;Note=Hypothetical gene.;Transcript_evidence=EU944389 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0278550-00;KEGG=Os05t0278550-00
Chr05	irgsp1_rep	five_prime_UTR	11614444	11614446	.	+	.	Parent=Os05t0278550-00
Chr05	irgsp1_rep	CDS	11614447	11614938	.	+	0	Parent=Os05t0278550-00
Chr05	irgsp1_rep	three_prime_UTR	11614939	11615071	.	+	.	Parent=Os05t0278550-00
Chr05	irgsp1_rep	mRNA	11641032	11643809	.	-	.	ID=Os05t0278950-00;Name=Os05t0278950-00;Locus_id=Os05g0278950;Note=Similar to ATP-dependent Clp protease proteolytic subunit.;Transcript_evidence=BT033932 (DDBJ);ORF_evidence=B8AXJ0 (UniProt);TENOR=Os05t0278950-00;KEGG=Os05t0278950-00
Chr05	irgsp1_rep	CDS	11643482	11643809	.	-	0	Parent=Os05t0278950-00
Chr05	irgsp1_rep	CDS	11641432	11641523	.	-	2	Parent=Os05t0278950-00
Chr05	irgsp1_rep	three_prime_UTR	11641220	11641431	.	-	.	Parent=Os05t0278950-00
Chr05	irgsp1_rep	three_prime_UTR	11641032	11641114	.	-	.	Parent=Os05t0278950-00
Chr05	irgsp1_rep	mRNA	11647853	11656591	.	-	.	ID=Os05t0279300-01;Name=Os05t0279300-01;Locus_id=Os05g0279300;Note=Similar to tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I).;Transcript_evidence=AK103741 (DDBJ%2C Best hit);ORF_evidence=B9S012 (UniProt);GO=Biological Process: pseudouridine synthesis (GO:0001522),Biological Process: RNA modification (GO:0009451),Molecular Function: RNA binding (GO:0003723),Molecular Function: pseudouridine synthase activity (GO:0009982);InterPro=Pseudouridine synthase I%2C TruA (IPR001406),Pseudouridine synthase I%2C TruA%2C N-terminal (IPR020094),Pseudouridine synthase I%2C TruA%2C alpha/beta domain (IPR020097),Pseudouridine synthase%2C catalytic domain (IPR020103);NIAS_FLcDNA=J033138L06;Expression=AK103741;TENOR=Os05t0279300-01;KEGG=Os05t0279300-01 (EC:5.4.99.12)
Chr05	irgsp1_rep	five_prime_UTR	11656487	11656591	.	-	.	Parent=Os05t0279300-01
Chr05	irgsp1_rep	CDS	11656394	11656486	.	-	0	Parent=Os05t0279300-01
Chr05	irgsp1_rep	CDS	11656195	11656327	.	-	0	Parent=Os05t0279300-01
Chr05	irgsp1_rep	CDS	11655172	11655306	.	-	2	Parent=Os05t0279300-01
Chr05	irgsp1_rep	CDS	11654988	11655028	.	-	2	Parent=Os05t0279300-01
Chr05	irgsp1_rep	three_prime_UTR	11654666	11654987	.	-	.	Parent=Os05t0279300-01
Chr05	irgsp1_rep	three_prime_UTR	11654172	11654234	.	-	.	Parent=Os05t0279300-01
Chr05	irgsp1_rep	three_prime_UTR	11647853	11648169	.	-	.	Parent=Os05t0279300-01
Chr05	irgsp1_rep	mRNA	11660556	11666374	.	+	.	ID=Os05t0279400-01;Name=Os05t0279400-01;Locus_id=Os05g0279400;RAP-DB Gene Symbol Synonym(s)=EBR1;RAP-DB Gene Name Synonym(s)=enhanced blight and blast resistance 1;CGSNL Gene Symbol=EBR1;CGSNL Gene Name=ENHANCED BLIGHT AND BLAST RESISTANCE 1;Oryzabase Gene Symbol Synonym(s)=OsRFP;Oryzabase Gene Name Synonym(s)=RING finger protein%2C enhanced blight and blast resistance 1;Note=RING-type E3 ubiquitin ligase%2C Control of innate immunity and broad-spectrum disease resistance;Transcript_evidence=AK102650;ORF_evidence=Q0DJH5;GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Zinc finger%2C RING-type (IPR001841),ZN598/Hel2%2C RING finger (IPR041888),Zinc finger C2H2-type (IPR013087);NIAS_FLcDNA=J033101B01;Manual Curation=December 23%2C 2019;Literature_PMID=27978435;Oryzabase=21173;Expression=AK102650;TENOR=Os05t0279400-01;KEGG=Os05t0279400-01
Chr05	irgsp1_rep	five_prime_UTR	11660556	11660763	.	+	.	Parent=Os05t0279400-01
Chr05	irgsp1_rep	CDS	11660764	11660931	.	+	0	Parent=Os05t0279400-01
Chr05	irgsp1_rep	CDS	11661735	11662043	.	+	0	Parent=Os05t0279400-01
Chr05	irgsp1_rep	CDS	11663328	11663536	.	+	0	Parent=Os05t0279400-01
Chr05	irgsp1_rep	CDS	11663623	11663671	.	+	1	Parent=Os05t0279400-01
Chr05	irgsp1_rep	CDS	11663787	11663874	.	+	0	Parent=Os05t0279400-01
Chr05	irgsp1_rep	CDS	11663971	11664035	.	+	2	Parent=Os05t0279400-01
Chr05	irgsp1_rep	CDS	11664161	11665834	.	+	0	Parent=Os05t0279400-01
Chr05	irgsp1_rep	three_prime_UTR	11665835	11666374	.	+	.	Parent=Os05t0279400-01
Chr05	irgsp1_rep	mRNA	11660604	11666248	.	+	.	ID=Os05t0279400-02;Name=Os05t0279400-02;Locus_id=Os05g0279400;CGSNL Gene Symbol=EBR1;CGSNL Gene Name=ENHANCED BLIGHT AND BLAST RESISTANCE 1;Oryzabase Gene Symbol Synonym(s)=OsRFP;Oryzabase Gene Name Synonym(s)=RING finger protein%2C enhanced blight and blast resistance 1;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=AK100629 (DDBJ%2C Best hit);ORF_evidence=B8AW30 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J023109C14;Oryzabase=21173;Expression=AK100629;TENOR=Os05t0279400-02;KEGG=Os05t0279400-02
Chr05	irgsp1_rep	five_prime_UTR	11660604	11660763	.	+	.	Parent=Os05t0279400-02
Chr05	irgsp1_rep	CDS	11660764	11660931	.	+	0	Parent=Os05t0279400-02
Chr05	irgsp1_rep	CDS	11661735	11662043	.	+	0	Parent=Os05t0279400-02
Chr05	irgsp1_rep	CDS	11663328	11663536	.	+	0	Parent=Os05t0279400-02
Chr05	irgsp1_rep	CDS	11663623	11663671	.	+	1	Parent=Os05t0279400-02
Chr05	irgsp1_rep	CDS	11663787	11663874	.	+	0	Parent=Os05t0279400-02
Chr05	irgsp1_rep	CDS	11663971	11664035	.	+	2	Parent=Os05t0279400-02
Chr05	irgsp1_rep	CDS	11664161	11665834	.	+	0	Parent=Os05t0279400-02
Chr05	irgsp1_rep	three_prime_UTR	11665835	11666248	.	+	.	Parent=Os05t0279400-02
Chr05	irgsp1_rep	mRNA	11671479	11680977	.	+	.	ID=Os05t0279600-01;Name=Os05t0279600-01;Locus_id=Os05g0279600;Note=Endonuclease/exonuclease/phosphatase domain containing protein.;Transcript_evidence=AK070566 (DDBJ%2C Best hit);ORF_evidence=B8AW31 (UniProt);InterPro=Endonuclease/exonuclease/phosphatase (IPR005135);NIAS_FLcDNA=J023056I09;TENOR=Os05t0279600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	11671479	11671732	.	+	.	Parent=Os05t0279600-01
Chr05	irgsp1_rep	CDS	11671733	11671880	.	+	0	Parent=Os05t0279600-01
Chr05	irgsp1_rep	CDS	11672314	11672355	.	+	2	Parent=Os05t0279600-01
Chr05	irgsp1_rep	CDS	11677291	11677373	.	+	2	Parent=Os05t0279600-01
Chr05	irgsp1_rep	CDS	11677468	11677569	.	+	0	Parent=Os05t0279600-01
Chr05	irgsp1_rep	CDS	11677666	11677689	.	+	0	Parent=Os05t0279600-01
Chr05	irgsp1_rep	three_prime_UTR	11677690	11677882	.	+	.	Parent=Os05t0279600-01
Chr05	irgsp1_rep	three_prime_UTR	11678900	11678994	.	+	.	Parent=Os05t0279600-01
Chr05	irgsp1_rep	three_prime_UTR	11680567	11680977	.	+	.	Parent=Os05t0279600-01
Chr05	irgsp1_rep	mRNA	11692959	11697141	.	+	.	ID=Os05t0279750-01;Name=Os05t0279750-01;Locus_id=Os05g0279750;Note=Hypothetical gene.;Transcript_evidence=AK288254 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090015J22;TENOR=Os05t0279750-01;KEGG=Os05t0279750-01
Chr05	irgsp1_rep	five_prime_UTR	11692959	11693549	.	+	.	Parent=Os05t0279750-01
Chr05	irgsp1_rep	CDS	11693550	11694251	.	+	0	Parent=Os05t0279750-01
Chr05	irgsp1_rep	three_prime_UTR	11694252	11697141	.	+	.	Parent=Os05t0279750-01
Chr05	irgsp1_rep	mRNA	11699832	11702720	.	-	.	ID=Os05t0279850-00;Name=Os05t0279850-00;Locus_id=Os05g0279850;Note=Hypothetical protein.;Transcript_evidence=tplb0028j17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0279850-00
Chr05	irgsp1_rep	five_prime_UTR	11702719	11702720	.	-	.	Parent=Os05t0279850-00
Chr05	irgsp1_rep	CDS	11702253	11702718	.	-	0	Parent=Os05t0279850-00
Chr05	irgsp1_rep	CDS	11701021	11701085	.	-	2	Parent=Os05t0279850-00
Chr05	irgsp1_rep	three_prime_UTR	11701015	11701020	.	-	.	Parent=Os05t0279850-00
Chr05	irgsp1_rep	three_prime_UTR	11700693	11700919	.	-	.	Parent=Os05t0279850-00
Chr05	irgsp1_rep	three_prime_UTR	11699832	11700386	.	-	.	Parent=Os05t0279850-00
Chr05	irgsp1_rep	mRNA	11700217	11702760	.	+	.	ID=Os05t0279900-00;Name=Os05t0279900-00;Locus_id=Os05g0279900;Oryzabase Gene Symbol Synonym(s)=OsPGL17%2C PGL17;Oryzabase Gene Name Synonym(s)=Polygalacturonases-Like 17%2C PG-like 17;Note=Similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_175244.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);Oryzabase=22294;TENOR=Os05t0279900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	11700217	11700369	.	+	0	Parent=Os05t0279900-00
Chr05	irgsp1_rep	CDS	11700705	11700912	.	+	0	Parent=Os05t0279900-00
Chr05	irgsp1_rep	CDS	11701007	11701088	.	+	2	Parent=Os05t0279900-00
Chr05	irgsp1_rep	CDS	11702256	11702760	.	+	1	Parent=Os05t0279900-00
Chr05	irgsp1_rep	mRNA	11723666	11725716	.	-	.	ID=Os05t0280200-01;Name=Os05t0280200-01;Locus_id=Os05g0280200;CGSNL Gene Symbol=RGP2;CGSNL Gene Name=RAS -RELATED GPT-BINDING PROTEIN2;Oryzabase Gene Symbol Synonym(s)=rgp2%2C OsRab11B1;Oryzabase Gene Name Synonym(s)=ras -related GPT-binding protein2%2C Ras-related protein RGP2%2C GTP-binding regulatory protein RGP2%2C small GTP-binding protein OsRab11B1%2C GTP-binding protein OsRab11;Note=Similar to Ras-related protein RGP2.;Transcript_evidence=AK120316 (DDBJ%2C Best hit);ORF_evidence=A2Y2Q3 (UniProt);GO=Biological Process: small GTPase mediated signal transduction (GO:0007264),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Small GTP-binding protein domain (IPR005225);NIAS_FLcDNA=J013055N09;Oryzabase=6404;Expression=AK120316;TENOR=Os05t0280200-01;KEGG=Os05t0280200-01
Chr05	irgsp1_rep	five_prime_UTR	11725625	11725716	.	-	.	Parent=Os05t0280200-01
Chr05	irgsp1_rep	CDS	11725460	11725624	.	-	0	Parent=Os05t0280200-01
Chr05	irgsp1_rep	CDS	11724300	11724425	.	-	0	Parent=Os05t0280200-01
Chr05	irgsp1_rep	CDS	11723937	11723954	.	-	0	Parent=Os05t0280200-01
Chr05	irgsp1_rep	three_prime_UTR	11723666	11723936	.	-	.	Parent=Os05t0280200-01
Chr05	irgsp1_rep	mRNA	11723716	11725706	.	+	.	ID=Os05t0280350-00;Name=Os05t0280350-00;Locus_id=Os05g0280350;Note=Hypothetical gene.;Transcript_evidence=BT084300 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0280350-00
Chr05	irgsp1_rep	five_prime_UTR	11723716	11724197	.	+	.	Parent=Os05t0280350-00
Chr05	irgsp1_rep	CDS	11724198	11724411	.	+	0	Parent=Os05t0280350-00
Chr05	irgsp1_rep	CDS	11725449	11725706	.	+	2	Parent=Os05t0280350-00
Chr05	irgsp1_rep	mRNA	11753281	11756377	.	-	.	ID=Os05t0280500-01;Name=Os05t0280500-01;Locus_id=Os05g0280500;Oryzabase Gene Symbol Synonym(s)=GPAT;Oryzabase Gene Name Synonym(s)=glycerol-3-phosphate acyltransferase;Note=Phospholipid/glycerol acyltransferase domain containing protein.;Transcript_evidence=AK111471 (DDBJ%2C Best hit);ORF_evidence=NP_001148130.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Phospholipid/glycerol acyltransferase (IPR002123);NIAS_FLcDNA=002-183-E12;Oryzabase=21977;Expression=AK111471;TENOR=Os05t0280500-01;KEGG=Os05t0280500-01
Chr05	irgsp1_rep	five_prime_UTR	11756328	11756377	.	-	.	Parent=Os05t0280500-01
Chr05	irgsp1_rep	CDS	11755614	11756327	.	-	0	Parent=Os05t0280500-01
Chr05	irgsp1_rep	CDS	11753498	11754397	.	-	0	Parent=Os05t0280500-01
Chr05	irgsp1_rep	three_prime_UTR	11753281	11753497	.	-	.	Parent=Os05t0280500-01
Chr05	irgsp1_rep	mRNA	11753538	11754420	.	+	.	ID=Os05t0280600-00;Name=Os05t0280600-00;Locus_id=Os05g0280600;Note=Hypothetical protein.;Transcript_evidence=FP100363 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0280600-00
Chr05	irgsp1_rep	five_prime_UTR	11753538	11753539	.	+	.	Parent=Os05t0280600-00
Chr05	irgsp1_rep	CDS	11753540	11754256	.	+	0	Parent=Os05t0280600-00
Chr05	irgsp1_rep	three_prime_UTR	11754257	11754420	.	+	.	Parent=Os05t0280600-00
Chr05	irgsp1_rep	mRNA	11788697	11791865	.	-	.	ID=Os05t0280700-01;Name=Os05t0280700-01;Locus_id=Os05g0280700;Oryzabase Gene Symbol Synonym(s)=YK11%2C OsCrRLK1L11;Oryzabase Gene Name Synonym(s)=Catharanthus roseus receptor-like kinase1-like kinase 11;Note=Similar to Resistance protein candidate (Fragment).;Transcript_evidence=AK121335 (DDBJ%2C Best hit);ORF_evidence=A2Y2Q6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635),Malectin-like carbohydrate-binding domain (IPR024788);NIAS_FLcDNA=J023119L07;Oryzabase=15187;Expression=AK121335;TENOR=Os05t0280700-01;KEGG=Os05t0280700-01
Chr05	irgsp1_rep	five_prime_UTR	11791705	11791865	.	-	.	Parent=Os05t0280700-01
Chr05	irgsp1_rep	CDS	11789095	11791704	.	-	0	Parent=Os05t0280700-01
Chr05	irgsp1_rep	three_prime_UTR	11788697	11789094	.	-	.	Parent=Os05t0280700-01
Chr05	irgsp1_rep	mRNA	11788900	11791340	.	-	.	ID=Os05t0280700-02;Name=Os05t0280700-02;Locus_id=Os05g0280700;Oryzabase Gene Symbol Synonym(s)=YK11%2C OsCrRLK1L11;Oryzabase Gene Name Synonym(s)=Catharanthus roseus receptor-like kinase1-like kinase 11;Note=Hypothetical conserved gene.;Transcript_evidence=AK100616 (DDBJ%2C Best hit);ORF_evidence=A2Y2Q6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635),Malectin-like carbohydrate-binding domain (IPR024788);NIAS_FLcDNA=J023108B08;Oryzabase=15187;Expression=AK100616;TENOR=Os05t0280700-02;KEGG=Os05t0280700-02
Chr05	irgsp1_rep	five_prime_UTR	11791339	11791340	.	-	.	Parent=Os05t0280700-02
Chr05	irgsp1_rep	CDS	11789095	11791338	.	-	0	Parent=Os05t0280700-02
Chr05	irgsp1_rep	three_prime_UTR	11788900	11789094	.	-	.	Parent=Os05t0280700-02
Chr05	irgsp1_rep	mRNA	11891585	11892690	.	+	.	ID=Os05t0281400-01;Name=Os05t0281400-01;Locus_id=Os05g0281400;Note=Protein of unknown function DUF810 domain containing protein.;Transcript_evidence=AK073309 (DDBJ%2C Best hit);ORF_evidence=NP_001062941.1 (RefSeq);InterPro=Protein of unknown function DUF810 (IPR008528);NIAS_FLcDNA=J033029G06;TENOR=Os05t0281400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	11891585	11891586	.	+	.	Parent=Os05t0281400-01
Chr05	irgsp1_rep	CDS	11891587	11892100	.	+	0	Parent=Os05t0281400-01
Chr05	irgsp1_rep	CDS	11892194	11892378	.	+	2	Parent=Os05t0281400-01
Chr05	irgsp1_rep	three_prime_UTR	11892379	11892690	.	+	.	Parent=Os05t0281400-01
Chr05	irgsp1_rep	mRNA	12050916	12052723	.	+	.	ID=Os05t0282900-01;Name=Os05t0282900-01;Locus_id=Os05g0282900;Note=Conserved hypothetical protein.;Transcript_evidence=AK241240 (DDBJ%2C Best hit);ORF_evidence=NP_001174319.1 (RefSeq);NIAS_FLcDNA=J065128J11;TENOR=Os05t0282900-01;KEGG=Os05t0282900-01
Chr05	irgsp1_rep	CDS	12050916	12051128	.	+	0	Parent=Os05t0282900-01
Chr05	irgsp1_rep	three_prime_UTR	12051129	12052723	.	+	.	Parent=Os05t0282900-01
Chr05	irgsp1_rep	mRNA	12059245	12062680	.	+	.	ID=Os05t0283000-01;Name=Os05t0283000-01;Locus_id=Os05g0283000;Note=Conserved hypothetical protein.;Transcript_evidence=AK064150 (DDBJ%2C Best hit);ORF_evidence=Q656V9 (UniProt);NIAS_FLcDNA=002-103-D07;TENOR=Os05t0283000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	12059245	12059698	.	+	.	Parent=Os05t0283000-01
Chr05	irgsp1_rep	five_prime_UTR	12059788	12059880	.	+	.	Parent=Os05t0283000-01
Chr05	irgsp1_rep	CDS	12059881	12059887	.	+	0	Parent=Os05t0283000-01
Chr05	irgsp1_rep	CDS	12061628	12061749	.	+	2	Parent=Os05t0283000-01
Chr05	irgsp1_rep	three_prime_UTR	12061750	12062680	.	+	.	Parent=Os05t0283000-01
Chr05	irgsp1_rep	mRNA	12069508	12070563	.	+	.	ID=Os05t0283200-01;Name=Os05t0283200-01;Locus_id=Os05g0283200;Note=Pectinesterase inhibitor domain containing protein.;Transcript_evidence=AK120717 (DDBJ%2C Best hit);ORF_evidence=A2Y2R2 (UniProt);GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);NIAS_FLcDNA=J023002D08;Expression=AK120717;TENOR=Os05t0283200-01;KEGG=Os05t0283200-01
Chr05	irgsp1_rep	five_prime_UTR	12069508	12069583	.	+	.	Parent=Os05t0283200-01
Chr05	irgsp1_rep	CDS	12069584	12070129	.	+	0	Parent=Os05t0283200-01
Chr05	irgsp1_rep	three_prime_UTR	12070130	12070563	.	+	.	Parent=Os05t0283200-01
Chr05	irgsp1_rep	mRNA	12293923	12297781	.	+	.	ID=Os05t0285900-01;Name=Os05t0285900-01;Locus_id=Os05g0285900;Oryzabase Gene Symbol Synonym(s)=OsSTA143%2C STA143;Note=Conserved hypothetical protein.;Transcript_evidence=AK061533 (DDBJ%2C Best hit);ORF_evidence=B9FNN3 (UniProt);NIAS_FLcDNA=006-310-F04;Oryzabase=19432;TENOR=Os05t0285900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	12293923	12294353	.	+	.	Parent=Os05t0285900-01
Chr05	irgsp1_rep	five_prime_UTR	12294956	12295078	.	+	.	Parent=Os05t0285900-01
Chr05	irgsp1_rep	five_prime_UTR	12295597	12295665	.	+	.	Parent=Os05t0285900-01
Chr05	irgsp1_rep	five_prime_UTR	12296845	12296904	.	+	.	Parent=Os05t0285900-01
Chr05	irgsp1_rep	five_prime_UTR	12297187	12297234	.	+	.	Parent=Os05t0285900-01
Chr05	irgsp1_rep	five_prime_UTR	12297351	12297445	.	+	.	Parent=Os05t0285900-01
Chr05	irgsp1_rep	CDS	12297446	12297634	.	+	0	Parent=Os05t0285900-01
Chr05	irgsp1_rep	three_prime_UTR	12297635	12297781	.	+	.	Parent=Os05t0285900-01
Chr05	irgsp1_rep	mRNA	12293964	12298522	.	+	.	ID=Os05t0285900-02;Name=Os05t0285900-02;Locus_id=Os05g0285900;Oryzabase Gene Symbol Synonym(s)=OsSTA143%2C STA143;Note=Conserved hypothetical protein.;Transcript_evidence=AK073229 (DDBJ%2C Best hit);ORF_evidence=B9FNN3 (UniProt);NIAS_FLcDNA=J033020D07;Oryzabase=19432;TENOR=Os05t0285900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	12293964	12294353	.	+	.	Parent=Os05t0285900-02
Chr05	irgsp1_rep	five_prime_UTR	12294956	12295078	.	+	.	Parent=Os05t0285900-02
Chr05	irgsp1_rep	five_prime_UTR	12295597	12297234	.	+	.	Parent=Os05t0285900-02
Chr05	irgsp1_rep	five_prime_UTR	12297351	12297445	.	+	.	Parent=Os05t0285900-02
Chr05	irgsp1_rep	CDS	12297446	12297634	.	+	0	Parent=Os05t0285900-02
Chr05	irgsp1_rep	three_prime_UTR	12297635	12298522	.	+	.	Parent=Os05t0285900-02
Chr05	irgsp1_rep	mRNA	12293965	12297785	.	+	.	ID=Os05t0285900-03;Name=Os05t0285900-03;Locus_id=Os05g0285900;Oryzabase Gene Symbol Synonym(s)=OsSTA143%2C STA143;Note=Conserved hypothetical protein.;Transcript_evidence=AK066158 (DDBJ%2C Best hit);ORF_evidence=B9FNN3 (UniProt);NIAS_FLcDNA=J013054I19;Oryzabase=19432;TENOR=Os05t0285900-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	12293965	12294353	.	+	.	Parent=Os05t0285900-03
Chr05	irgsp1_rep	five_prime_UTR	12294956	12295078	.	+	.	Parent=Os05t0285900-03
Chr05	irgsp1_rep	five_prime_UTR	12295597	12295665	.	+	.	Parent=Os05t0285900-03
Chr05	irgsp1_rep	five_prime_UTR	12296845	12296904	.	+	.	Parent=Os05t0285900-03
Chr05	irgsp1_rep	five_prime_UTR	12297187	12297234	.	+	.	Parent=Os05t0285900-03
Chr05	irgsp1_rep	five_prime_UTR	12297351	12297445	.	+	.	Parent=Os05t0285900-03
Chr05	irgsp1_rep	CDS	12297446	12297634	.	+	0	Parent=Os05t0285900-03
Chr05	irgsp1_rep	three_prime_UTR	12297635	12297785	.	+	.	Parent=Os05t0285900-03
Chr05	irgsp1_rep	mRNA	12308251	12309287	.	+	.	ID=Os05t0286100-01;Name=Os05t0286100-01;Locus_id=Os05g0286100;RAP-DB Gene Symbol Synonym(s)=OsZFP350;RAP-DB Gene Name Synonym(s)=zinc finger protein 350;CGSNL Gene Symbol=ZFP350;CGSNL Gene Name=ZINC FINGER PROTEIN 350;Oryzabase Gene Symbol Synonym(s)=OsZFP350;Oryzabase Gene Name Synonym(s)=zinc finger protein ZFP350;Note=Zinc finger protein%2C Adaptability of rice roots to abiotic stress;Transcript_evidence=AK108829;ORF_evidence=Q0DJG4;GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Zinc finger C2H2 superfamily (IPR036236),Zinc finger C2H2-type (IPR013087);NIAS_FLcDNA=002-151-G02;Manual Curation=March 16%2C 2020;Literature_PMID=31125390;Oryzabase=23328;Expression=AK108829;TENOR=Os05t0286100-01;KEGG=Os05t0286100-01
Chr05	irgsp1_rep	five_prime_UTR	12308251	12308266	.	+	.	Parent=Os05t0286100-01
Chr05	irgsp1_rep	CDS	12308267	12309223	.	+	0	Parent=Os05t0286100-01
Chr05	irgsp1_rep	three_prime_UTR	12309224	12309287	.	+	.	Parent=Os05t0286100-01
Chr05	irgsp1_rep	mRNA	12453666	12457789	.	+	.	ID=Os05t0287800-01;Name=Os05t0287800-01;Locus_id=Os05g0287800;Note=Similar to Phosphatidic acid phosphatase-like protein.;Transcript_evidence=AK071727 (DDBJ%2C Best hit);ORF_evidence=E5FY32 (UniProt);NIAS_FLcDNA=J023110H06;Expression=AK071727;TENOR=Os05t0287800-01;KEGG=Os05t0287800-01
Chr05	irgsp1_rep	five_prime_UTR	12453666	12453777	.	+	.	Parent=Os05t0287800-01
Chr05	irgsp1_rep	CDS	12453778	12453813	.	+	0	Parent=Os05t0287800-01
Chr05	irgsp1_rep	CDS	12453941	12454030	.	+	0	Parent=Os05t0287800-01
Chr05	irgsp1_rep	CDS	12454302	12454388	.	+	0	Parent=Os05t0287800-01
Chr05	irgsp1_rep	CDS	12454518	12454586	.	+	0	Parent=Os05t0287800-01
Chr05	irgsp1_rep	CDS	12456108	12456188	.	+	0	Parent=Os05t0287800-01
Chr05	irgsp1_rep	CDS	12456270	12456341	.	+	0	Parent=Os05t0287800-01
Chr05	irgsp1_rep	CDS	12456433	12456493	.	+	0	Parent=Os05t0287800-01
Chr05	irgsp1_rep	CDS	12456596	12456698	.	+	2	Parent=Os05t0287800-01
Chr05	irgsp1_rep	CDS	12456810	12456905	.	+	1	Parent=Os05t0287800-01
Chr05	irgsp1_rep	CDS	12456982	12457028	.	+	1	Parent=Os05t0287800-01
Chr05	irgsp1_rep	CDS	12457109	12457233	.	+	2	Parent=Os05t0287800-01
Chr05	irgsp1_rep	CDS	12457324	12457398	.	+	0	Parent=Os05t0287800-01
Chr05	irgsp1_rep	three_prime_UTR	12457399	12457789	.	+	.	Parent=Os05t0287800-01
Chr05	irgsp1_rep	mRNA	12572342	12573480	.	+	.	ID=Os05t0289100-01;Name=Os05t0289100-01;Locus_id=Os05g0289100;Note=Hypothetical conserved gene.;Transcript_evidence=AK242538 (DDBJ%2C Best hit);ORF_evidence=C1AR14 (UniProt);NIAS_FLcDNA=J080317G07;TENOR=Os05t0289100-01;KEGG=Os05t0289100-01
Chr05	irgsp1_rep	five_prime_UTR	12572342	12572342	.	+	.	Parent=Os05t0289100-01
Chr05	irgsp1_rep	CDS	12572343	12572552	.	+	0	Parent=Os05t0289100-01
Chr05	irgsp1_rep	CDS	12572634	12572663	.	+	0	Parent=Os05t0289100-01
Chr05	irgsp1_rep	three_prime_UTR	12572664	12573480	.	+	.	Parent=Os05t0289100-01
Chr05	irgsp1_rep	mRNA	12601169	12606114	.	-	.	ID=Os05t0289400-01;Name=Os05t0289400-01;Locus_id=Os05g0289400;Note=Similar to CRN (Crooked neck) protein.;Transcript_evidence=AK100478 (DDBJ%2C Best hit);ORF_evidence=Q9FJ37 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Cellular Component: intracellular (GO:0005622),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=RNA-processing protein%2C HAT helix (IPR003107),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026);NIAS_FLcDNA=J023095B21;Expression=AK100478;TENOR=Os05t0289400-01;KEGG=Os05t0289400-01
Chr05	irgsp1_rep	five_prime_UTR	12606037	12606114	.	-	.	Parent=Os05t0289400-01
Chr05	irgsp1_rep	CDS	12604402	12606036	.	-	0	Parent=Os05t0289400-01
Chr05	irgsp1_rep	CDS	12602217	12602433	.	-	0	Parent=Os05t0289400-01
Chr05	irgsp1_rep	CDS	12601902	12602100	.	-	2	Parent=Os05t0289400-01
Chr05	irgsp1_rep	CDS	12601601	12601721	.	-	1	Parent=Os05t0289400-01
Chr05	irgsp1_rep	three_prime_UTR	12601169	12601600	.	-	.	Parent=Os05t0289400-01
Chr05	irgsp1_rep	mRNA	12601388	12605153	.	-	.	ID=Os05t0289400-02;Name=Os05t0289400-02;Locus_id=Os05g0289400;Note=Hypothetical conserved gene.;Transcript_evidence=AK103185 (DDBJ%2C Best hit);ORF_evidence=B9FNN9 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Cellular Component: intracellular (GO:0005622),Molecular Function: binding (GO:0005488);InterPro=RNA-processing protein%2C HAT helix (IPR003107),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033121L02;Expression=AK103185;TENOR=Os05t0289400-02;KEGG=Os05t0289400-02
Chr05	irgsp1_rep	five_prime_UTR	12605152	12605153	.	-	.	Parent=Os05t0289400-02
Chr05	irgsp1_rep	CDS	12604402	12605151	.	-	0	Parent=Os05t0289400-02
Chr05	irgsp1_rep	CDS	12602217	12602433	.	-	0	Parent=Os05t0289400-02
Chr05	irgsp1_rep	CDS	12601902	12602100	.	-	2	Parent=Os05t0289400-02
Chr05	irgsp1_rep	CDS	12601601	12601721	.	-	1	Parent=Os05t0289400-02
Chr05	irgsp1_rep	three_prime_UTR	12601388	12601600	.	-	.	Parent=Os05t0289400-02
Chr05	irgsp1_rep	mRNA	12621464	12622964	.	+	.	ID=Os05t0289700-01;Name=Os05t0289700-01;Locus_id=Os05g0289700;CGSNL Gene Symbol=AM10;CGSNL Gene Name=ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 10;Oryzabase Gene Symbol Synonym(s)=AM10;Note=Arbuscular mycorrhizal specific marker 10.%2CBenzyl alcohol benzoyl transferase.;Transcript_evidence=BT086008 (DDBJ);ORF_evidence=Q01IV4 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);Oryzabase=8183;TENOR=Os05t0289700-01
Chr05	irgsp1_rep	CDS	12621464	12621913	.	+	0	Parent=Os05t0289700-01
Chr05	irgsp1_rep	CDS	12622020	12622964	.	+	0	Parent=Os05t0289700-01
Chr05	irgsp1_rep	mRNA	12621497	12622552	.	-	.	ID=Os05t0290000-00;Name=Os05t0290000-00;Locus_id=Os05g0290000;Note=Hypothetical protein.;Transcript_evidence=BT035701 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0290000-00
Chr05	irgsp1_rep	five_prime_UTR	12622448	12622552	.	-	.	Parent=Os05t0290000-00
Chr05	irgsp1_rep	CDS	12621977	12622447	.	-	0	Parent=Os05t0290000-00
Chr05	irgsp1_rep	three_prime_UTR	12621968	12621976	.	-	.	Parent=Os05t0290000-00
Chr05	irgsp1_rep	three_prime_UTR	12621497	12621896	.	-	.	Parent=Os05t0290000-00
Chr05	irgsp1_rep	mRNA	12675159	12676708	.	-	.	ID=Os05t0290300-00;Name=Os05t0290300-00;Locus_id=Os05g0290300;Note=Hypothetical conserved gene.;Transcript_evidence=CT836415 (DDBJ%2C Best hit);ORF_evidence=B8AW39 (UniProt);GO=Biological Process: GPI anchor biosynthetic process (GO:0006506),Cellular Component: integral to membrane (GO:0016021),Molecular Function: phosphatidylinositol N-acetylglucosaminyltransferase activity (GO:0017176);InterPro=N-acetylglucosaminyl transferase component (IPR007720);TENOR=Os05t0290300-00;KEGG=Os05t0290300-00
Chr05	irgsp1_rep	five_prime_UTR	12676335	12676708	.	-	.	Parent=Os05t0290300-00
Chr05	irgsp1_rep	CDS	12675914	12676334	.	-	0	Parent=Os05t0290300-00
Chr05	irgsp1_rep	CDS	12675559	12675652	.	-	2	Parent=Os05t0290300-00
Chr05	irgsp1_rep	CDS	12675374	12675488	.	-	1	Parent=Os05t0290300-00
Chr05	irgsp1_rep	three_prime_UTR	12675159	12675373	.	-	.	Parent=Os05t0290300-00
Chr05	irgsp1_rep	mRNA	12675178	12686023	.	+	.	ID=Os05t0290400-01;Name=Os05t0290400-01;Locus_id=Os05g0290400;Note=Hypothetical gene.;Transcript_evidence=AK242923 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090085A19;TENOR=Os05t0290400-01
Chr05	irgsp1_rep	five_prime_UTR	12675178	12675488	.	+	.	Parent=Os05t0290400-01
Chr05	irgsp1_rep	five_prime_UTR	12675559	12675652	.	+	.	Parent=Os05t0290400-01
Chr05	irgsp1_rep	five_prime_UTR	12675914	12676326	.	+	.	Parent=Os05t0290400-01
Chr05	irgsp1_rep	five_prime_UTR	12678512	12679006	.	+	.	Parent=Os05t0290400-01
Chr05	irgsp1_rep	five_prime_UTR	12680110	12680331	.	+	.	Parent=Os05t0290400-01
Chr05	irgsp1_rep	five_prime_UTR	12680402	12680505	.	+	.	Parent=Os05t0290400-01
Chr05	irgsp1_rep	five_prime_UTR	12680586	12680723	.	+	.	Parent=Os05t0290400-01
Chr05	irgsp1_rep	five_prime_UTR	12680854	12681220	.	+	.	Parent=Os05t0290400-01
Chr05	irgsp1_rep	CDS	12681221	12681285	.	+	0	Parent=Os05t0290400-01
Chr05	irgsp1_rep	CDS	12685497	12685709	.	+	1	Parent=Os05t0290400-01
Chr05	irgsp1_rep	CDS	12685833	12686023	.	+	1	Parent=Os05t0290400-01
Chr05	irgsp1_rep	mRNA	12831242	12831782	.	+	.	ID=Os05t0291600-01;Name=Os05t0291600-01;Locus_id=Os05g0291600;Note=Hypothetical conserved gene.;Transcript_evidence=AK073226 (DDBJ%2C Best hit);ORF_evidence=NP_001059231.1 (RefSeq);NIAS_FLcDNA=J033020M04;Expression=AK073226;TENOR=Os05t0291600-01;KEGG=Os05t0291600-01
Chr05	irgsp1_rep	five_prime_UTR	12831242	12831244	.	+	.	Parent=Os05t0291600-01
Chr05	irgsp1_rep	CDS	12831245	12831505	.	+	0	Parent=Os05t0291600-01
Chr05	irgsp1_rep	three_prime_UTR	12831506	12831782	.	+	.	Parent=Os05t0291600-01
Chr05	irgsp1_rep	mRNA	12838032	12839420	.	-	.	ID=Os05t0291700-01;Name=Os05t0291700-01;Locus_id=Os05g0291700;Note=Similar to PTAC16 (PLASTID TRANSCRIPTIONALLY ACTIVE18)%3B binding / catalytic.;Transcript_evidence=AK108453 (DDBJ%2C Best hit);ORF_evidence=XP_002875803.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NmrA-like (IPR008030),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=002-143-C11;Expression=AK108453;TENOR=Os05t0291700-01;KEGG=Os05t0291700-01
Chr05	irgsp1_rep	five_prime_UTR	12839310	12839420	.	-	.	Parent=Os05t0291700-01
Chr05	irgsp1_rep	CDS	12838428	12839309	.	-	0	Parent=Os05t0291700-01
Chr05	irgsp1_rep	CDS	12838220	12838354	.	-	0	Parent=Os05t0291700-01
Chr05	irgsp1_rep	three_prime_UTR	12838032	12838219	.	-	.	Parent=Os05t0291700-01
Chr05	irgsp1_rep	mRNA	12833493	12839337	.	-	.	ID=Os05t0291700-02;Name=Os05t0291700-02;Locus_id=Os05g0291700;Note=Similar to cDNA clone:002-143-C11%2C full insert sequence.;Transcript_evidence=AK073234 (DDBJ%2C Best hit);ORF_evidence=B7F1B2 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NmrA-like (IPR008030),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033024F08;Expression=AK073234;TENOR=Os05t0291700-02;KEGG=Os05t0291700-02
Chr05	irgsp1_rep	five_prime_UTR	12839310	12839337	.	-	.	Parent=Os05t0291700-02
Chr05	irgsp1_rep	CDS	12838428	12839309	.	-	0	Parent=Os05t0291700-02
Chr05	irgsp1_rep	CDS	12838286	12838354	.	-	0	Parent=Os05t0291700-02
Chr05	irgsp1_rep	CDS	12835560	12835618	.	-	0	Parent=Os05t0291700-02
Chr05	irgsp1_rep	CDS	12833691	12834168	.	-	1	Parent=Os05t0291700-02
Chr05	irgsp1_rep	three_prime_UTR	12833493	12833690	.	-	.	Parent=Os05t0291700-02
Chr05	irgsp1_rep	mRNA	12833544	12839325	.	-	.	ID=Os05t0291700-03;Name=Os05t0291700-03;Locus_id=Os05g0291700;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK099865 (DDBJ%2C Best hit);ORF_evidence=B7F1B2 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NmrA-like (IPR008030),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013111D24;Expression=AK099865;TENOR=Os05t0291700-03;KEGG=Os05t0291700-03
Chr05	irgsp1_rep	five_prime_UTR	12839310	12839325	.	-	.	Parent=Os05t0291700-03
Chr05	irgsp1_rep	CDS	12838428	12839309	.	-	0	Parent=Os05t0291700-03
Chr05	irgsp1_rep	CDS	12838286	12838354	.	-	0	Parent=Os05t0291700-03
Chr05	irgsp1_rep	CDS	12835560	12835618	.	-	0	Parent=Os05t0291700-03
Chr05	irgsp1_rep	CDS	12833872	12834168	.	-	1	Parent=Os05t0291700-03
Chr05	irgsp1_rep	CDS	12833691	12833838	.	-	1	Parent=Os05t0291700-03
Chr05	irgsp1_rep	three_prime_UTR	12833544	12833690	.	-	.	Parent=Os05t0291700-03
Chr05	irgsp1_rep	mRNA	12865994	12872391	.	+	.	ID=Os05t0292200-01;Name=Os05t0292200-01;Locus_id=Os05g0292200;CGSNL Gene Symbol=DLN135;CGSNL Gene Name=DLN REPRESSOR 135;Oryzabase Gene Symbol Synonym(s)=OsDLN135;Oryzabase Gene Name Synonym(s)=DLN repressor 135%2C DLN motif protein 135;Note=Similar to Transcription factor IIA large subunit (TFIIA-L1).;Transcript_evidence=AK065373 (DDBJ%2C Best hit);ORF_evidence=B6T3Z3 (UniProt);GO=Biological Process: transcription initiation from RNA polymerase II promoter (GO:0006367),Cellular Component: transcription factor TFIIA complex (GO:0005672);InterPro=Transcription factor IIA%2C alpha/beta subunit (IPR004855),Transcription factor IIA%2C helical (IPR009083),Transcription factor IIA%2C beta-barrel (IPR009088),Transcription factor IIA%2C alpha subunit%2C N-terminal (IPR013028);NIAS_FLcDNA=J013022M09;Oryzabase=23197;Expression=AK065373;TENOR=Os05t0292200-01;KEGG=Os05t0292200-01
Chr05	irgsp1_rep	five_prime_UTR	12865994	12866131	.	+	.	Parent=Os05t0292200-01
Chr05	irgsp1_rep	CDS	12866132	12866251	.	+	0	Parent=Os05t0292200-01
Chr05	irgsp1_rep	CDS	12866362	12866550	.	+	0	Parent=Os05t0292200-01
Chr05	irgsp1_rep	CDS	12866679	12866846	.	+	0	Parent=Os05t0292200-01
Chr05	irgsp1_rep	CDS	12866927	12866981	.	+	0	Parent=Os05t0292200-01
Chr05	irgsp1_rep	CDS	12867105	12867163	.	+	2	Parent=Os05t0292200-01
Chr05	irgsp1_rep	CDS	12868243	12868368	.	+	0	Parent=Os05t0292200-01
Chr05	irgsp1_rep	CDS	12870740	12870868	.	+	0	Parent=Os05t0292200-01
Chr05	irgsp1_rep	CDS	12870945	12870999	.	+	0	Parent=Os05t0292200-01
Chr05	irgsp1_rep	CDS	12871092	12871267	.	+	2	Parent=Os05t0292200-01
Chr05	irgsp1_rep	CDS	12871362	12871445	.	+	0	Parent=Os05t0292200-01
Chr05	irgsp1_rep	CDS	12872061	12872084	.	+	0	Parent=Os05t0292200-01
Chr05	irgsp1_rep	three_prime_UTR	12872085	12872391	.	+	.	Parent=Os05t0292200-01
Chr05	irgsp1_rep	mRNA	12896015	12896822	.	+	.	ID=Os05t0292800-01;Name=Os05t0292800-01;Locus_id=Os05g0292800;Note=Similar to One helix protein (OHP).;Transcript_evidence=AK059562 (DDBJ%2C Best hit);ORF_evidence=Q8LPV2 (UniProt);InterPro=Chlorophyll a/b binding protein domain (IPR023329);NIAS_FLcDNA=001-029-H03;Expression=AK059562;TENOR=Os05t0292800-01;KEGG=Os05t0292800-01
Chr05	irgsp1_rep	five_prime_UTR	12896015	12896087	.	+	.	Parent=Os05t0292800-01
Chr05	irgsp1_rep	CDS	12896088	12896234	.	+	0	Parent=Os05t0292800-01
Chr05	irgsp1_rep	CDS	12896367	12896489	.	+	0	Parent=Os05t0292800-01
Chr05	irgsp1_rep	CDS	12896615	12896683	.	+	0	Parent=Os05t0292800-01
Chr05	irgsp1_rep	three_prime_UTR	12896684	12896822	.	+	.	Parent=Os05t0292800-01
Chr05	irgsp1_rep	mRNA	12933093	12938368	.	-	.	ID=Os05t0293500-01;Name=Os05t0293500-01;Locus_id=Os05g0293500;Oryzabase Gene Symbol Synonym(s)=OsPLL5%2C PLL5;Oryzabase Gene Name Synonym(s)=Pectate lyase-like 5;Note=Similar to Pectate lyase B (Fragment).;Transcript_evidence=AK072592 (DDBJ%2C Best hit);ORF_evidence=B2BMQ1 (UniProt);InterPro=Pectate lyase/Amb allergen (IPR002022),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),AmbAllergen (IPR018082);NIAS_FLcDNA=J023134D01;Oryzabase=22490;Expression=AK072592;TENOR=Os05t0293500-01;KEGG=Os05t0293500-01
Chr05	irgsp1_rep	five_prime_UTR	12938356	12938368	.	-	.	Parent=Os05t0293500-01
Chr05	irgsp1_rep	CDS	12937583	12938355	.	-	0	Parent=Os05t0293500-01
Chr05	irgsp1_rep	CDS	12936925	12937054	.	-	1	Parent=Os05t0293500-01
Chr05	irgsp1_rep	CDS	12933195	12933413	.	-	0	Parent=Os05t0293500-01
Chr05	irgsp1_rep	three_prime_UTR	12933093	12933194	.	-	.	Parent=Os05t0293500-01
Chr05	irgsp1_rep	mRNA	12949524	12955005	.	+	.	ID=Os05t0293600-01;Name=Os05t0293600-01;Locus_id=Os05g0293600;Note=Hypothetical protein.;Transcript_evidence=AK288783 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090069E01;TENOR=Os05t0293600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	12949524	12953633	.	+	.	Parent=Os05t0293600-01
Chr05	irgsp1_rep	CDS	12953634	12954380	.	+	0	Parent=Os05t0293600-01
Chr05	irgsp1_rep	three_prime_UTR	12954381	12955005	.	+	.	Parent=Os05t0293600-01
Chr05	irgsp1_rep	mRNA	12989754	12992479	.	-	.	ID=Os05t0294600-01;Name=Os05t0294600-01;Locus_id=Os05g0294600;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK068789 (DDBJ%2C Best hit);ORF_evidence=XP_002864050.1 (RefSeq);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J013166J08;Expression=AK068789;TENOR=Os05t0294600-01;KEGG=Os05t0294600-01
Chr05	irgsp1_rep	five_prime_UTR	12992419	12992479	.	-	.	Parent=Os05t0294600-01
Chr05	irgsp1_rep	CDS	12991466	12992418	.	-	0	Parent=Os05t0294600-01
Chr05	irgsp1_rep	CDS	12989844	12991164	.	-	1	Parent=Os05t0294600-01
Chr05	irgsp1_rep	three_prime_UTR	12989754	12989843	.	-	.	Parent=Os05t0294600-01
Chr05	irgsp1_rep	mRNA	12989754	12990642	.	-	.	ID=Os05t0294600-02;Name=Os05t0294600-02;Locus_id=Os05g0294600;Note=Hypothetical conserved gene.;Transcript_evidence=AK104944 (DDBJ%2C Best hit);ORF_evidence=A2Y2T2 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=001-107-F08;Expression=AK104944;TENOR=Os05t0294600-02;KEGG=Os05t0294600-02
Chr05	irgsp1_rep	five_prime_UTR	12990642	12990642	.	-	.	Parent=Os05t0294600-02
Chr05	irgsp1_rep	CDS	12989844	12990641	.	-	0	Parent=Os05t0294600-02
Chr05	irgsp1_rep	three_prime_UTR	12989754	12989843	.	-	.	Parent=Os05t0294600-02
Chr05	irgsp1_rep	mRNA	13006292	13010183	.	+	.	ID=Os05t0294800-01;Name=Os05t0294800-01;Locus_id=Os05g0294800;Note=Hypothetical gene.;Transcript_evidence=AK065926 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013050P04;Expression=AK065926;TENOR=Os05t0294800-01;KEGG=Os05t0294800-01
Chr05	irgsp1_rep	five_prime_UTR	13006292	13006292	.	+	.	Parent=Os05t0294800-01
Chr05	irgsp1_rep	CDS	13006293	13006706	.	+	0	Parent=Os05t0294800-01
Chr05	irgsp1_rep	three_prime_UTR	13006707	13007669	.	+	.	Parent=Os05t0294800-01
Chr05	irgsp1_rep	three_prime_UTR	13007871	13007969	.	+	.	Parent=Os05t0294800-01
Chr05	irgsp1_rep	three_prime_UTR	13008658	13008734	.	+	.	Parent=Os05t0294800-01
Chr05	irgsp1_rep	three_prime_UTR	13009476	13010183	.	+	.	Parent=Os05t0294800-01
Chr05	irgsp1_rep	mRNA	13027560	13036755	.	+	.	ID=Os05t0295100-01;Name=Os05t0295100-01;Locus_id=Os05g0295100;Note=Hypothetical conserved gene.;Transcript_evidence=AK108559 (DDBJ%2C Best hit);ORF_evidence=B8AW48 (UniProt);GO=Cellular Component: nucleus (GO:0005634);InterPro=Digestive organ expansion factor%2C predicted (IPR010678);NIAS_FLcDNA=002-145-A02;Expression=AK108559;TENOR=Os05t0295100-01;KEGG=Os05t0295100-01
Chr05	irgsp1_rep	five_prime_UTR	13027560	13027653	.	+	.	Parent=Os05t0295100-01
Chr05	irgsp1_rep	CDS	13027654	13027696	.	+	0	Parent=Os05t0295100-01
Chr05	irgsp1_rep	CDS	13027806	13027943	.	+	2	Parent=Os05t0295100-01
Chr05	irgsp1_rep	CDS	13028327	13028477	.	+	2	Parent=Os05t0295100-01
Chr05	irgsp1_rep	CDS	13028858	13028999	.	+	1	Parent=Os05t0295100-01
Chr05	irgsp1_rep	CDS	13030201	13030306	.	+	0	Parent=Os05t0295100-01
Chr05	irgsp1_rep	CDS	13032118	13032221	.	+	2	Parent=Os05t0295100-01
Chr05	irgsp1_rep	CDS	13032618	13032740	.	+	0	Parent=Os05t0295100-01
Chr05	irgsp1_rep	CDS	13033079	13033159	.	+	0	Parent=Os05t0295100-01
Chr05	irgsp1_rep	CDS	13033618	13033763	.	+	0	Parent=Os05t0295100-01
Chr05	irgsp1_rep	CDS	13035630	13035702	.	+	1	Parent=Os05t0295100-01
Chr05	irgsp1_rep	CDS	13035926	13035967	.	+	0	Parent=Os05t0295100-01
Chr05	irgsp1_rep	three_prime_UTR	13035968	13036755	.	+	.	Parent=Os05t0295100-01
Chr05	irgsp1_rep	mRNA	13027593	13046685	.	+	.	ID=Os05t0295100-02;Name=Os05t0295100-02;Locus_id=Os05g0295100;Note=Protein of unknown function DUF1253 family protein.;Transcript_evidence=AK100239 (DDBJ%2C Best hit);ORF_evidence=B7F1E3 (UniProt);GO=Cellular Component: nucleus (GO:0005634);InterPro=Digestive organ expansion factor%2C predicted (IPR010678);NIAS_FLcDNA=J023054L06;Expression=AK100239;TENOR=Os05t0295100-02;KEGG=Os05t0295100-02
Chr05	irgsp1_rep	five_prime_UTR	13027593	13027653	.	+	.	Parent=Os05t0295100-02
Chr05	irgsp1_rep	CDS	13027654	13027696	.	+	0	Parent=Os05t0295100-02
Chr05	irgsp1_rep	CDS	13027806	13027943	.	+	2	Parent=Os05t0295100-02
Chr05	irgsp1_rep	CDS	13028327	13028477	.	+	2	Parent=Os05t0295100-02
Chr05	irgsp1_rep	CDS	13028858	13028999	.	+	1	Parent=Os05t0295100-02
Chr05	irgsp1_rep	CDS	13030201	13030306	.	+	0	Parent=Os05t0295100-02
Chr05	irgsp1_rep	CDS	13032118	13032221	.	+	2	Parent=Os05t0295100-02
Chr05	irgsp1_rep	CDS	13032618	13032740	.	+	0	Parent=Os05t0295100-02
Chr05	irgsp1_rep	CDS	13033079	13033159	.	+	0	Parent=Os05t0295100-02
Chr05	irgsp1_rep	CDS	13033618	13033763	.	+	0	Parent=Os05t0295100-02
Chr05	irgsp1_rep	CDS	13035630	13035702	.	+	1	Parent=Os05t0295100-02
Chr05	irgsp1_rep	CDS	13039538	13039612	.	+	0	Parent=Os05t0295100-02
Chr05	irgsp1_rep	CDS	13041097	13041135	.	+	0	Parent=Os05t0295100-02
Chr05	irgsp1_rep	CDS	13041218	13041306	.	+	0	Parent=Os05t0295100-02
Chr05	irgsp1_rep	CDS	13041473	13041537	.	+	1	Parent=Os05t0295100-02
Chr05	irgsp1_rep	CDS	13042253	13042299	.	+	2	Parent=Os05t0295100-02
Chr05	irgsp1_rep	CDS	13042383	13042442	.	+	0	Parent=Os05t0295100-02
Chr05	irgsp1_rep	CDS	13042627	13042698	.	+	0	Parent=Os05t0295100-02
Chr05	irgsp1_rep	CDS	13043602	13043631	.	+	0	Parent=Os05t0295100-02
Chr05	irgsp1_rep	CDS	13045196	13045290	.	+	0	Parent=Os05t0295100-02
Chr05	irgsp1_rep	CDS	13045400	13045505	.	+	1	Parent=Os05t0295100-02
Chr05	irgsp1_rep	CDS	13045630	13045692	.	+	0	Parent=Os05t0295100-02
Chr05	irgsp1_rep	CDS	13045792	13045863	.	+	0	Parent=Os05t0295100-02
Chr05	irgsp1_rep	CDS	13046295	13046369	.	+	0	Parent=Os05t0295100-02
Chr05	irgsp1_rep	three_prime_UTR	13046370	13046685	.	+	.	Parent=Os05t0295100-02
Chr05	irgsp1_rep	mRNA	13057124	13060284	.	-	.	ID=Os05t0295200-01;Name=Os05t0295200-01;Locus_id=Os05g0295200;Note=Conserved hypothetical protein.;Transcript_evidence=AK073450 (DDBJ%2C Best hit);ORF_evidence=B9FNQ1 (UniProt);NIAS_FLcDNA=J033046F02;TENOR=Os05t0295200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	13060128	13060284	.	-	.	Parent=Os05t0295200-01
Chr05	irgsp1_rep	CDS	13060124	13060127	.	-	0	Parent=Os05t0295200-01
Chr05	irgsp1_rep	CDS	13059621	13059682	.	-	2	Parent=Os05t0295200-01
Chr05	irgsp1_rep	CDS	13059289	13059540	.	-	0	Parent=Os05t0295200-01
Chr05	irgsp1_rep	CDS	13059026	13059112	.	-	0	Parent=Os05t0295200-01
Chr05	irgsp1_rep	three_prime_UTR	13057866	13059025	.	-	.	Parent=Os05t0295200-01
Chr05	irgsp1_rep	three_prime_UTR	13057654	13057778	.	-	.	Parent=Os05t0295200-01
Chr05	irgsp1_rep	three_prime_UTR	13057124	13057457	.	-	.	Parent=Os05t0295200-01
Chr05	irgsp1_rep	mRNA	13064221	13065317	.	-	.	ID=Os05t0295300-01;Name=Os05t0295300-01;Locus_id=Os05g0295300;Note=Similar to Acetyl-coenzyme A carboxylase (EC 6.4.1.2).;Transcript_evidence=AK059261 (DDBJ%2C Best hit);ORF_evidence=O48959 (UniProt);GO=Molecular Function: ligase activity (GO:0016874);InterPro=Carboxyl transferase (IPR000022);NIAS_FLcDNA=001-025-A08;Expression=AK059261;TENOR=Os05t0295300-01;KEGG=Os05t0295300-01 (EC:6.3.4.14%2C EC:6.4.1.2)
Chr05	irgsp1_rep	five_prime_UTR	13065316	13065317	.	-	.	Parent=Os05t0295300-01
Chr05	irgsp1_rep	CDS	13064815	13065315	.	-	0	Parent=Os05t0295300-01
Chr05	irgsp1_rep	CDS	13064613	13064669	.	-	0	Parent=Os05t0295300-01
Chr05	irgsp1_rep	three_prime_UTR	13064221	13064612	.	-	.	Parent=Os05t0295300-01
Chr05	irgsp1_rep	mRNA	13064243	13064968	.	+	.	ID=Os05t0295500-00;Name=Os05t0295500-00;Locus_id=Os05g0295500;Note=Non-protein coding transcript.;Transcript_evidence=BT019212 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0295500-00
Chr05	irgsp1_rep	exon	13064243	13064968	.	+	.	Parent=Os05t0295500-00
Chr05	irgsp1_rep	mRNA	13088568	13092914	.	-	.	ID=Os05t0295700-01;Name=Os05t0295700-01;Locus_id=Os05g0295700;Note=Mitochondrial matrix Mmp37 domain containing protein.;Transcript_evidence=AK100560 (DDBJ%2C Best hit);ORF_evidence=B9FNQ2 (UniProt);InterPro=Mitochondrial matrix Mmp37 (IPR015222);NIAS_FLcDNA=J023104F15;TENOR=Os05t0295700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	13092711	13092914	.	-	.	Parent=Os05t0295700-01
Chr05	irgsp1_rep	CDS	13092543	13092710	.	-	0	Parent=Os05t0295700-01
Chr05	irgsp1_rep	CDS	13092287	13092415	.	-	0	Parent=Os05t0295700-01
Chr05	irgsp1_rep	three_prime_UTR	13092019	13092286	.	-	.	Parent=Os05t0295700-01
Chr05	irgsp1_rep	three_prime_UTR	13091813	13091933	.	-	.	Parent=Os05t0295700-01
Chr05	irgsp1_rep	three_prime_UTR	13090995	13091096	.	-	.	Parent=Os05t0295700-01
Chr05	irgsp1_rep	three_prime_UTR	13090199	13090905	.	-	.	Parent=Os05t0295700-01
Chr05	irgsp1_rep	three_prime_UTR	13089157	13089218	.	-	.	Parent=Os05t0295700-01
Chr05	irgsp1_rep	three_prime_UTR	13088568	13089057	.	-	.	Parent=Os05t0295700-01
Chr05	irgsp1_rep	mRNA	13094198	13098774	.	-	.	ID=Os05t0295800-01;Name=Os05t0295800-01;Locus_id=Os05g0295800;CGSNL Gene Symbol=GLYI8;CGSNL Gene Name=GLYOXALASE I-8;Oryzabase Gene Symbol Synonym(s)=OsGLYI8%2C OsGLYI-8%2C GLYI-8;Oryzabase Gene Name Synonym(s)=glyoxalase I-8%2C glyoxalase I enzyme 8;Note=Similar to Glyoxalase I (EC 4.4.1.5).;Transcript_evidence=AK070232 (DDBJ%2C Best hit);ORF_evidence=NP_001146873.1 (RefSeq);GO=Molecular Function: lactoylglutathione lyase activity (GO:0004462),Molecular Function: metal ion binding (GO:0046872);InterPro=Glyoxalase/fosfomycin resistance/dioxygenase (IPR004360),Glyoxalase I (IPR004361),Glyoxalase I%2C conserved site (IPR018146);NIAS_FLcDNA=J023043J03;Oryzabase=9358;Expression=AK070232;TENOR=Os05t0295800-01;KEGG=Os05t0295800-01 (EC:4.4.1.5)
Chr05	irgsp1_rep	five_prime_UTR	13098694	13098774	.	-	.	Parent=Os05t0295800-01
Chr05	irgsp1_rep	five_prime_UTR	13098510	13098548	.	-	.	Parent=Os05t0295800-01
Chr05	irgsp1_rep	CDS	13098405	13098509	.	-	0	Parent=Os05t0295800-01
Chr05	irgsp1_rep	CDS	13097079	13097140	.	-	0	Parent=Os05t0295800-01
Chr05	irgsp1_rep	CDS	13095723	13095783	.	-	1	Parent=Os05t0295800-01
Chr05	irgsp1_rep	CDS	13095538	13095617	.	-	0	Parent=Os05t0295800-01
Chr05	irgsp1_rep	CDS	13095369	13095439	.	-	1	Parent=Os05t0295800-01
Chr05	irgsp1_rep	CDS	13095142	13095231	.	-	2	Parent=Os05t0295800-01
Chr05	irgsp1_rep	CDS	13094560	13094660	.	-	2	Parent=Os05t0295800-01
Chr05	irgsp1_rep	three_prime_UTR	13094198	13094559	.	-	.	Parent=Os05t0295800-01
Chr05	irgsp1_rep	mRNA	13094169	13098872	.	-	.	ID=Os05t0295800-02;Name=Os05t0295800-02;Locus_id=Os05g0295800;RAP-DB Gene Symbol Synonym(s)=GLYI8%2C OsGLYI8%2C OsGLYI-8;RAP-DB Gene Name Synonym(s)=GLYOXALASE I-8%2C glyoxalase I-8;CGSNL Gene Symbol=GLYI8;CGSNL Gene Name=GLYOXALASE I-8;Oryzabase Gene Symbol Synonym(s)=OsGLYI8%2C OsGLYI-8%2C GLYI-8;Oryzabase Gene Name Synonym(s)=glyoxalase I-8%2C glyoxalase I enzyme 8;Note=Nuclear-localized glyoxalase I (EC:4.4.1.5)%2C Detoxification of methylglyoxal in the nucleus;Transcript_evidence=Inferred from literature;ORF_evidence=B9FNQ3;GO=Molecular Function: lactoylglutathione lyase activity (GO:0004462),Molecular Function: metal ion binding (GO:0046872);InterPro=Glyoxalase I (IPR004361),Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (IPR029068),Glyoxalase/fosfomycin resistance/dioxygenase domain (IPR004360),Glyoxalase I%2C conserved site (IPR018146);Manual Curation=February 28%2C 2017;Literature_PMID=27797431;Oryzabase=9358;Subcellular location=nucleus (GO:0005634)
Chr05	irgsp1_rep	five_prime_UTR	13098799	13098872	.	-	.	Parent=Os05t0295800-02
Chr05	irgsp1_rep	CDS	13098694	13098798	.	-	0	Parent=Os05t0295800-02
Chr05	irgsp1_rep	CDS	13098405	13098548	.	-	0	Parent=Os05t0295800-02
Chr05	irgsp1_rep	CDS	13097079	13097140	.	-	0	Parent=Os05t0295800-02
Chr05	irgsp1_rep	CDS	13095723	13095783	.	-	1	Parent=Os05t0295800-02
Chr05	irgsp1_rep	CDS	13095538	13095617	.	-	0	Parent=Os05t0295800-02
Chr05	irgsp1_rep	CDS	13095369	13095439	.	-	1	Parent=Os05t0295800-02
Chr05	irgsp1_rep	CDS	13095142	13095231	.	-	2	Parent=Os05t0295800-02
Chr05	irgsp1_rep	CDS	13094560	13094660	.	-	2	Parent=Os05t0295800-02
Chr05	irgsp1_rep	three_prime_UTR	13094169	13094559	.	-	.	Parent=Os05t0295800-02
Chr05	irgsp1_rep	mRNA	13106640	13115806	.	-	.	ID=Os05t0295900-01;Name=Os05t0295900-01;Locus_id=Os05g0295900;Note=Conserved hypothetical protein.;Transcript_evidence=AK069962 (DDBJ%2C Best hit);ORF_evidence=B9FNQ4 (UniProt);NIAS_FLcDNA=J023037D24;Expression=AK069962;TENOR=Os05t0295900-01;KEGG=Os05t0295900-01
Chr05	irgsp1_rep	five_prime_UTR	13115699	13115806	.	-	.	Parent=Os05t0295900-01
Chr05	irgsp1_rep	CDS	13115429	13115698	.	-	0	Parent=Os05t0295900-01
Chr05	irgsp1_rep	CDS	13114432	13114548	.	-	0	Parent=Os05t0295900-01
Chr05	irgsp1_rep	CDS	13113810	13113874	.	-	0	Parent=Os05t0295900-01
Chr05	irgsp1_rep	CDS	13113284	13113383	.	-	1	Parent=Os05t0295900-01
Chr05	irgsp1_rep	CDS	13113136	13113207	.	-	0	Parent=Os05t0295900-01
Chr05	irgsp1_rep	CDS	13111966	13112025	.	-	0	Parent=Os05t0295900-01
Chr05	irgsp1_rep	CDS	13111698	13111827	.	-	0	Parent=Os05t0295900-01
Chr05	irgsp1_rep	CDS	13111431	13111624	.	-	2	Parent=Os05t0295900-01
Chr05	irgsp1_rep	CDS	13111154	13111338	.	-	0	Parent=Os05t0295900-01
Chr05	irgsp1_rep	CDS	13110736	13110863	.	-	1	Parent=Os05t0295900-01
Chr05	irgsp1_rep	CDS	13109869	13110197	.	-	2	Parent=Os05t0295900-01
Chr05	irgsp1_rep	CDS	13108805	13109039	.	-	0	Parent=Os05t0295900-01
Chr05	irgsp1_rep	CDS	13106947	13107710	.	-	2	Parent=Os05t0295900-01
Chr05	irgsp1_rep	three_prime_UTR	13106640	13106946	.	-	.	Parent=Os05t0295900-01
Chr05	irgsp1_rep	mRNA	13140368	13142741	.	+	.	ID=Os05t0296200-01;Name=Os05t0296200-01;Locus_id=Os05g0296200;Note=Conserved hypothetical protein.;Transcript_evidence=AK064523 (DDBJ%2C Best hit);ORF_evidence=A2Y2U5 (UniProt);NIAS_FLcDNA=002-111-G03;TENOR=Os05t0296200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	13140368	13140460	.	+	.	Parent=Os05t0296200-01
Chr05	irgsp1_rep	CDS	13140461	13141105	.	+	0	Parent=Os05t0296200-01
Chr05	irgsp1_rep	three_prime_UTR	13141106	13142741	.	+	.	Parent=Os05t0296200-01
Chr05	irgsp1_rep	mRNA	13187374	13187922	.	-	.	ID=Os05t0296530-00;Name=Os05t0296530-00;Locus_id=Os05g0296530;Note=Non-protein coding transcript.;Transcript_evidence=AK356614 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0296530-00
Chr05	irgsp1_rep	exon	13187374	13187922	.	-	.	Parent=Os05t0296530-00
Chr05	irgsp1_rep	mRNA	13187911	13188220	.	+	.	ID=Os05t0296600-01;Name=Os05t0296600-01;Locus_id=Os05g0296600;Note=Non-protein coding transcript.;Transcript_evidence=AK059372 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-026-F02;TENOR=Os05t0296600-01
Chr05	irgsp1_rep	exon	13187911	13188220	.	+	.	Parent=Os05t0296600-01
Chr05	irgsp1_rep	mRNA	13192718	13193340	.	+	.	ID=Os05t0296750-01;Name=Os05t0296750-01;Locus_id=Os05g0296750;Note=Hypothetical gene.;Transcript_evidence=AK063686 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-119-F03;Expression=AK063686;TENOR=Os05t0296750-01;KEGG=Os05t0296750-01
Chr05	irgsp1_rep	CDS	13192718	13193197	.	+	0	Parent=Os05t0296750-01
Chr05	irgsp1_rep	three_prime_UTR	13193198	13193340	.	+	.	Parent=Os05t0296750-01
Chr05	irgsp1_rep	mRNA	13198394	13199560	.	-	.	ID=Os05t0296800-01;Name=Os05t0296800-01;Locus_id=Os05g0296800;Note=Similar to Retrotransposon Karma DNA%2C complete sequence.;Transcript_evidence=AK108441 (DDBJ%2C Best hit);ORF_evidence=Q8H993 (UniProt);NIAS_FLcDNA=002-143-B11;TENOR=Os05t0296800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	13199269	13199560	.	-	.	Parent=Os05t0296800-01
Chr05	irgsp1_rep	five_prime_UTR	13198998	13198998	.	-	.	Parent=Os05t0296800-01
Chr05	irgsp1_rep	CDS	13198394	13198997	.	-	0	Parent=Os05t0296800-01
Chr05	irgsp1_rep	mRNA	13197199	13199558	.	-	.	ID=Os05t0296800-02;Name=Os05t0296800-02;Locus_id=Os05g0296800;Note=Conserved hypothetical protein.;Transcript_evidence=AK108511 (DDBJ%2C Best hit);ORF_evidence=F2EHT9 (UniProt);NIAS_FLcDNA=002-144-A04;TENOR=Os05t0296800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	13199498	13199558	.	-	.	Parent=Os05t0296800-02
Chr05	irgsp1_rep	CDS	13199144	13199497	.	-	0	Parent=Os05t0296800-02
Chr05	irgsp1_rep	three_prime_UTR	13197199	13199143	.	-	.	Parent=Os05t0296800-02
Chr05	irgsp1_rep	mRNA	13229992	13230715	.	-	.	ID=Os05t0296900-01;Name=Os05t0296900-01;Locus_id=Os05g0296900;Note=Hypothetical conserved gene.;Transcript_evidence=AK100725 (DDBJ%2C Best hit);ORF_evidence=B8AWA5 (UniProt);NIAS_FLcDNA=J023117C23;Expression=AK100725;TENOR=Os05t0296900-01;KEGG=Os05t0296900-01
Chr05	irgsp1_rep	five_prime_UTR	13230631	13230715	.	-	.	Parent=Os05t0296900-01
Chr05	irgsp1_rep	CDS	13230478	13230630	.	-	0	Parent=Os05t0296900-01
Chr05	irgsp1_rep	CDS	13230169	13230261	.	-	0	Parent=Os05t0296900-01
Chr05	irgsp1_rep	three_prime_UTR	13229992	13230168	.	-	.	Parent=Os05t0296900-01
Chr05	irgsp1_rep	mRNA	13232746	13234909	.	+	.	ID=Os05t0297001-01;Name=Os05t0297001-01;Locus_id=Os05g0297001;Note=Similar to predicted protein.;Transcript_evidence=AK289001 (DDBJ%2C Best hit);ORF_evidence=NP_001043744.1 (RefSeq);NIAS_FLcDNA=J090088H22;TENOR=Os05t0297001-01;KEGG=Os05t0297001-01
Chr05	irgsp1_rep	five_prime_UTR	13232746	13233967	.	+	.	Parent=Os05t0297001-01
Chr05	irgsp1_rep	CDS	13233968	13234180	.	+	0	Parent=Os05t0297001-01
Chr05	irgsp1_rep	three_prime_UTR	13234181	13234909	.	+	.	Parent=Os05t0297001-01
Chr05	irgsp1_rep	mRNA	13258187	13259922	.	+	.	ID=Os05t0297300-01;Name=Os05t0297300-01;Locus_id=Os05g0297300;Note=Conserved hypothetical protein.;Transcript_evidence=AK067752 (DDBJ%2C Best hit);ORF_evidence=B9FK37 (UniProt);NIAS_FLcDNA=J013114A11;TENOR=Os05t0297300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	13258187	13258339	.	+	.	Parent=Os05t0297300-01
Chr05	irgsp1_rep	CDS	13258340	13259140	.	+	0	Parent=Os05t0297300-01
Chr05	irgsp1_rep	three_prime_UTR	13259141	13259922	.	+	.	Parent=Os05t0297300-01
Chr05	irgsp1_rep	mRNA	13260921	13261985	.	-	.	ID=Os05t0297400-00;Name=Os05t0297400-00;Locus_id=Os05g0297400;Note=Similar to CXIP4.;Transcript_evidence=FP092857 (DDBJ);ORF_evidence=B6TD23 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878);TENOR=Os05t0297400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	13261889	13261985	.	-	.	Parent=Os05t0297400-00
Chr05	irgsp1_rep	CDS	13260995	13261888	.	-	0	Parent=Os05t0297400-00
Chr05	irgsp1_rep	three_prime_UTR	13260921	13260994	.	-	.	Parent=Os05t0297400-00
Chr05	irgsp1_rep	mRNA	13274507	13275130	.	+	.	ID=Os05t0297600-00;Name=Os05t0297600-00;Locus_id=Os05g0297600;Note=Non-protein coding transcript.;Transcript_evidence=AK367245 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0297600-00
Chr05	irgsp1_rep	exon	13274507	13275130	.	+	.	Parent=Os05t0297600-00
Chr05	irgsp1_rep	mRNA	13275328	13278767	.	-	.	ID=Os05t0297800-01;Name=Os05t0297800-01;Locus_id=Os05g0297800;Note=Conserved hypothetical protein.;Transcript_evidence=AK241842 (DDBJ%2C Best hit);ORF_evidence=B9FNQ5 (UniProt);NIAS_FLcDNA=J065214A10;TENOR=Os05t0297800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	13278597	13278767	.	-	.	Parent=Os05t0297800-01
Chr05	irgsp1_rep	CDS	13278027	13278596	.	-	0	Parent=Os05t0297800-01
Chr05	irgsp1_rep	three_prime_UTR	13276825	13278026	.	-	.	Parent=Os05t0297800-01
Chr05	irgsp1_rep	three_prime_UTR	13275328	13275792	.	-	.	Parent=Os05t0297800-01
Chr05	irgsp1_rep	mRNA	13280293	13280716	.	-	.	ID=Os05t0297850-01;Name=Os05t0297850-01;Locus_id=Os05g0297850;Note=Hypothetical conserved gene.;Transcript_evidence=AK242077 (DDBJ%2C Best hit);ORF_evidence=B8AWA7 (UniProt);NIAS_FLcDNA=J075136I15;TENOR=Os05t0297850-01;KEGG=Os05t0297850-01
Chr05	irgsp1_rep	five_prime_UTR	13280643	13280716	.	-	.	Parent=Os05t0297850-01
Chr05	irgsp1_rep	CDS	13280424	13280642	.	-	0	Parent=Os05t0297850-01
Chr05	irgsp1_rep	three_prime_UTR	13280293	13280423	.	-	.	Parent=Os05t0297850-01
Chr05	irgsp1_rep	mRNA	13282401	13286141	.	+	.	ID=Os05t0297900-01;Name=Os05t0297900-01;Locus_id=Os05g0297900;Oryzabase Gene Symbol Synonym(s)=OsSigP4%2C SIGP4;Oryzabase Gene Name Synonym(s)=Type I Signal Peptidase 4%2C TYPE I SIGNAL PEPTIDASE 4;Note=Similar to Signal peptidase 18 subunit (Fragment).;Transcript_evidence=AK071238 (DDBJ%2C Best hit);ORF_evidence=B6T545 (UniProt);GO=Biological Process: signal peptide processing (GO:0006465),Cellular Component: membrane (GO:0016020),Molecular Function: peptidase activity (GO:0008233);InterPro=Peptidase S26B%2C eukaryotic signal peptidase (IPR001733),Peptidase S24/S26A/S26B/S26C%2C beta-ribbon domain (IPR011056),Peptidase S24/S26A/S26B/S26C (IPR015927),Peptidase S24/S26A/S26B (IPR019759);NIAS_FLcDNA=J023085B09;Oryzabase=20045;Expression=AK071238;TENOR=Os05t0297900-01;KEGG=Os05t0297900-01 (EC:3.4.-.-)
Chr05	irgsp1_rep	five_prime_UTR	13282401	13282490	.	+	.	Parent=Os05t0297900-01
Chr05	irgsp1_rep	CDS	13282491	13282569	.	+	0	Parent=Os05t0297900-01
Chr05	irgsp1_rep	CDS	13283163	13283275	.	+	2	Parent=Os05t0297900-01
Chr05	irgsp1_rep	CDS	13284646	13284717	.	+	0	Parent=Os05t0297900-01
Chr05	irgsp1_rep	CDS	13284856	13284891	.	+	0	Parent=Os05t0297900-01
Chr05	irgsp1_rep	CDS	13285011	13285056	.	+	0	Parent=Os05t0297900-01
Chr05	irgsp1_rep	CDS	13285200	13285287	.	+	2	Parent=Os05t0297900-01
Chr05	irgsp1_rep	CDS	13285375	13285432	.	+	1	Parent=Os05t0297900-01
Chr05	irgsp1_rep	CDS	13285690	13285740	.	+	0	Parent=Os05t0297900-01
Chr05	irgsp1_rep	three_prime_UTR	13285741	13286141	.	+	.	Parent=Os05t0297900-01
Chr05	irgsp1_rep	mRNA	13287281	13306641	.	-	.	ID=Os05t0298050-00;Name=Os05t0298050-00;Locus_id=Os05g0298050;Note=UDP-glucuronosyl/UDP-glucosyltransferase domain containing protein.;Transcript_evidence=tplb0014f17 (Wheat FLcDNA);ORF_evidence=B9FDG1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os05t0298050-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	13306458	13306641	.	-	.	Parent=Os05t0298050-00
Chr05	irgsp1_rep	five_prime_UTR	13287794	13287807	.	-	.	Parent=Os05t0298050-00
Chr05	irgsp1_rep	CDS	13287323	13287793	.	-	0	Parent=Os05t0298050-00
Chr05	irgsp1_rep	three_prime_UTR	13287281	13287322	.	-	.	Parent=Os05t0298050-00
Chr05	irgsp1_rep	mRNA	13308223	13312442	.	+	.	ID=Os05t0298200-01;Name=Os05t0298200-01;Locus_id=Os05g0298200;Note=Ankyrin repeat containing protein.;Transcript_evidence=AK066758 (DDBJ%2C Best hit);ORF_evidence=A2Y2V7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J013074O20;Expression=AK066758;TENOR=Os05t0298200-01;KEGG=Os05t0298200-01
Chr05	irgsp1_rep	five_prime_UTR	13308223	13308420	.	+	.	Parent=Os05t0298200-01
Chr05	irgsp1_rep	five_prime_UTR	13309356	13309397	.	+	.	Parent=Os05t0298200-01
Chr05	irgsp1_rep	CDS	13309398	13310147	.	+	0	Parent=Os05t0298200-01
Chr05	irgsp1_rep	CDS	13310826	13311617	.	+	0	Parent=Os05t0298200-01
Chr05	irgsp1_rep	CDS	13311824	13311883	.	+	0	Parent=Os05t0298200-01
Chr05	irgsp1_rep	three_prime_UTR	13311884	13312442	.	+	.	Parent=Os05t0298200-01
Chr05	irgsp1_rep	mRNA	13310861	13312308	.	+	.	ID=Os05t0298200-02;Name=Os05t0298200-02;Locus_id=Os05g0298200;Note=Hypothetical conserved gene.;Transcript_evidence=AK060760 (DDBJ%2C Best hit);ORF_evidence=B9FK40 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=001-032-H12;TENOR=Os05t0298200-02;KEGG=Os05t0298200-02
Chr05	irgsp1_rep	five_prime_UTR	13310861	13310861	.	+	.	Parent=Os05t0298200-02
Chr05	irgsp1_rep	CDS	13310862	13312088	.	+	0	Parent=Os05t0298200-02
Chr05	irgsp1_rep	three_prime_UTR	13312089	13312308	.	+	.	Parent=Os05t0298200-02
Chr05	irgsp1_rep	mRNA	13309420	13312155	.	-	.	ID=Os05t0298300-00;Name=Os05t0298300-00;Locus_id=Os05g0298300;Note=Hypothetical protein.;Transcript_evidence=tplb0059e11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0298300-00
Chr05	irgsp1_rep	five_prime_UTR	13312106	13312155	.	-	.	Parent=Os05t0298300-00
Chr05	irgsp1_rep	CDS	13311362	13312105	.	-	0	Parent=Os05t0298300-00
Chr05	irgsp1_rep	three_prime_UTR	13310824	13311361	.	-	.	Parent=Os05t0298300-00
Chr05	irgsp1_rep	three_prime_UTR	13309420	13310141	.	-	.	Parent=Os05t0298300-00
Chr05	irgsp1_rep	mRNA	13327999	13330334	.	-	.	ID=Os05t0298700-01;Name=Os05t0298700-01;Locus_id=Os05g0298700;Oryzabase Gene Symbol Synonym(s)=XYH;Note=Conserved hypothetical protein.;Transcript_evidence=AK108917 (DDBJ%2C Best hit);ORF_evidence=B9FK42 (UniProt);NIAS_FLcDNA=002-152-H04;Oryzabase=10419;TENOR=Os05t0298700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	13330269	13330334	.	-	.	Parent=Os05t0298700-01
Chr05	irgsp1_rep	CDS	13329888	13330268	.	-	0	Parent=Os05t0298700-01
Chr05	irgsp1_rep	CDS	13328547	13328771	.	-	0	Parent=Os05t0298700-01
Chr05	irgsp1_rep	three_prime_UTR	13327999	13328546	.	-	.	Parent=Os05t0298700-01
Chr05	irgsp1_rep	mRNA	13328195	13330259	.	+	.	ID=Os05t0298800-00;Name=Os05t0298800-00;Locus_id=Os05g0298800;Note=Hypothetical protein.;Transcript_evidence=tplb0048l17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0298800-00
Chr05	irgsp1_rep	five_prime_UTR	13328195	13328196	.	+	.	Parent=Os05t0298800-00
Chr05	irgsp1_rep	CDS	13328197	13329249	.	+	0	Parent=Os05t0298800-00
Chr05	irgsp1_rep	three_prime_UTR	13329250	13329291	.	+	.	Parent=Os05t0298800-00
Chr05	irgsp1_rep	three_prime_UTR	13329659	13330259	.	+	.	Parent=Os05t0298800-00
Chr05	irgsp1_rep	mRNA	13366943	13367660	.	+	.	ID=Os05t0298900-01;Name=Os05t0298900-01;Locus_id=Os05g0298900;Note=Hypothetical protein.;Transcript_evidence=AK105356 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-119-C05;TENOR=Os05t0298900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	13366943	13366944	.	+	.	Parent=Os05t0298900-01
Chr05	irgsp1_rep	CDS	13366945	13367466	.	+	0	Parent=Os05t0298900-01
Chr05	irgsp1_rep	three_prime_UTR	13367467	13367660	.	+	.	Parent=Os05t0298900-01
Chr05	irgsp1_rep	mRNA	13371907	13372642	.	+	.	ID=Os05t0299000-01;Name=Os05t0299000-01;Locus_id=Os05g0299000;Note=Conserved hypothetical protein.;Transcript_evidence=AK108720 (DDBJ%2C Best hit);ORF_evidence=B8AWB0 (UniProt);NIAS_FLcDNA=002-150-C01;Expression=AK108720;TENOR=Os05t0299000-01;KEGG=Os05t0299000-01
Chr05	irgsp1_rep	five_prime_UTR	13371907	13372286	.	+	.	Parent=Os05t0299000-01
Chr05	irgsp1_rep	CDS	13372287	13372595	.	+	0	Parent=Os05t0299000-01
Chr05	irgsp1_rep	three_prime_UTR	13372596	13372642	.	+	.	Parent=Os05t0299000-01
Chr05	irgsp1_rep	mRNA	13373635	13374271	.	-	.	ID=Os05t0299101-00;Name=Os05t0299101-00;Locus_id=Os05g0299101;Note=Hypothetical gene.;Transcript_evidence=CT836471 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os05t0299101-00;KEGG=Os05t0299101-00
Chr05	irgsp1_rep	five_prime_UTR	13374231	13374271	.	-	.	Parent=Os05t0299101-00
Chr05	irgsp1_rep	five_prime_UTR	13374112	13374143	.	-	.	Parent=Os05t0299101-00
Chr05	irgsp1_rep	CDS	13373881	13374111	.	-	0	Parent=Os05t0299101-00
Chr05	irgsp1_rep	three_prime_UTR	13373635	13373880	.	-	.	Parent=Os05t0299101-00
Chr05	irgsp1_rep	mRNA	13378515	13383485	.	-	.	ID=Os05t0299200-00;Name=Os05t0299200-00;Locus_id=Os05g0299200;Note=Hypothetical conserved gene.;Transcript_evidence=EU956990 (DDBJ);ORF_evidence=NP_001055128.1 (RefSeq);GO=Biological Process: carbohydrate transport (GO:0008643),Cellular Component: Golgi membrane (GO:0000139),Cellular Component: integral to membrane (GO:0016021),Molecular Function: sugar:hydrogen symporter activity (GO:0005351);InterPro=Nucleotide-sugar transporter (IPR007271);TENOR=Os05t0299200-00;KEGG=Os05t0299200-00
Chr05	irgsp1_rep	CDS	13382570	13383485	.	-	0	Parent=Os05t0299200-00
Chr05	irgsp1_rep	CDS	13381714	13381769	.	-	2	Parent=Os05t0299200-00
Chr05	irgsp1_rep	CDS	13380926	13381035	.	-	0	Parent=Os05t0299200-00
Chr05	irgsp1_rep	CDS	13380651	13380810	.	-	1	Parent=Os05t0299200-00
Chr05	irgsp1_rep	CDS	13380473	13380565	.	-	0	Parent=Os05t0299200-00
Chr05	irgsp1_rep	CDS	13378515	13378670	.	-	0	Parent=Os05t0299200-00
Chr05	irgsp1_rep	mRNA	13378539	13383343	.	+	.	ID=Os05t0299250-00;Name=Os05t0299250-00;Locus_id=Os05g0299250;Note=Hypothetical protein.;Transcript_evidence=tplb0062m11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0299250-00
Chr05	irgsp1_rep	five_prime_UTR	13378539	13378824	.	+	.	Parent=Os05t0299250-00
Chr05	irgsp1_rep	five_prime_UTR	13379949	13380056	.	+	.	Parent=Os05t0299250-00
Chr05	irgsp1_rep	five_prime_UTR	13380143	13380561	.	+	.	Parent=Os05t0299250-00
Chr05	irgsp1_rep	five_prime_UTR	13380639	13380805	.	+	.	Parent=Os05t0299250-00
Chr05	irgsp1_rep	five_prime_UTR	13380926	13381035	.	+	.	Parent=Os05t0299250-00
Chr05	irgsp1_rep	five_prime_UTR	13381714	13381839	.	+	.	Parent=Os05t0299250-00
Chr05	irgsp1_rep	five_prime_UTR	13382548	13383053	.	+	.	Parent=Os05t0299250-00
Chr05	irgsp1_rep	CDS	13383054	13383343	.	+	0	Parent=Os05t0299250-00
Chr05	irgsp1_rep	mRNA	13385142	13391031	.	-	.	ID=Os05t0299300-01;Name=Os05t0299300-01;Locus_id=Os05g0299300;Oryzabase Gene Symbol Synonym(s)=OsWD40-117;Note=Conserved hypothetical protein.;Transcript_evidence=AK111812 (DDBJ%2C Best hit);ORF_evidence=B9FNQ8 (UniProt);NIAS_FLcDNA=J013126O13;Oryzabase=10798;TENOR=Os05t0299300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	13390907	13391031	.	-	.	Parent=Os05t0299300-01
Chr05	irgsp1_rep	five_prime_UTR	13390537	13390551	.	-	.	Parent=Os05t0299300-01
Chr05	irgsp1_rep	CDS	13390132	13390536	.	-	0	Parent=Os05t0299300-01
Chr05	irgsp1_rep	three_prime_UTR	13388900	13390131	.	-	.	Parent=Os05t0299300-01
Chr05	irgsp1_rep	three_prime_UTR	13388553	13388611	.	-	.	Parent=Os05t0299300-01
Chr05	irgsp1_rep	three_prime_UTR	13388385	13388479	.	-	.	Parent=Os05t0299300-01
Chr05	irgsp1_rep	three_prime_UTR	13388198	13388210	.	-	.	Parent=Os05t0299300-01
Chr05	irgsp1_rep	three_prime_UTR	13387990	13388074	.	-	.	Parent=Os05t0299300-01
Chr05	irgsp1_rep	three_prime_UTR	13387860	13387922	.	-	.	Parent=Os05t0299300-01
Chr05	irgsp1_rep	three_prime_UTR	13387533	13387608	.	-	.	Parent=Os05t0299300-01
Chr05	irgsp1_rep	three_prime_UTR	13387328	13387436	.	-	.	Parent=Os05t0299300-01
Chr05	irgsp1_rep	three_prime_UTR	13387063	13387175	.	-	.	Parent=Os05t0299300-01
Chr05	irgsp1_rep	three_prime_UTR	13386734	13386792	.	-	.	Parent=Os05t0299300-01
Chr05	irgsp1_rep	three_prime_UTR	13385888	13385996	.	-	.	Parent=Os05t0299300-01
Chr05	irgsp1_rep	three_prime_UTR	13385142	13385809	.	-	.	Parent=Os05t0299300-01
Chr05	irgsp1_rep	mRNA	13405326	13410805	.	+	.	ID=Os05t0299500-01;Name=Os05t0299500-01;Locus_id=Os05g0299500;Note=Protein of unknown function DUF914%2C eukaryotic family protein.;Transcript_evidence=AK073649 (DDBJ%2C Best hit);ORF_evidence=B6U001 (UniProt);InterPro=Protein of unknown function DUF914%2C eukaryotic (IPR009262);NIAS_FLcDNA=J033047A18;Expression=AK073649;TENOR=Os05t0299500-01;KEGG=Os05t0299500-01
Chr05	irgsp1_rep	five_prime_UTR	13405326	13405390	.	+	.	Parent=Os05t0299500-01
Chr05	irgsp1_rep	CDS	13405391	13405517	.	+	0	Parent=Os05t0299500-01
Chr05	irgsp1_rep	CDS	13406002	13406096	.	+	2	Parent=Os05t0299500-01
Chr05	irgsp1_rep	CDS	13407316	13407373	.	+	0	Parent=Os05t0299500-01
Chr05	irgsp1_rep	CDS	13407534	13407728	.	+	2	Parent=Os05t0299500-01
Chr05	irgsp1_rep	CDS	13408102	13408178	.	+	2	Parent=Os05t0299500-01
Chr05	irgsp1_rep	CDS	13408470	13408552	.	+	0	Parent=Os05t0299500-01
Chr05	irgsp1_rep	CDS	13409203	13409254	.	+	1	Parent=Os05t0299500-01
Chr05	irgsp1_rep	CDS	13409367	13409435	.	+	0	Parent=Os05t0299500-01
Chr05	irgsp1_rep	CDS	13409670	13409756	.	+	0	Parent=Os05t0299500-01
Chr05	irgsp1_rep	CDS	13409856	13409917	.	+	0	Parent=Os05t0299500-01
Chr05	irgsp1_rep	CDS	13410213	13410405	.	+	1	Parent=Os05t0299500-01
Chr05	irgsp1_rep	three_prime_UTR	13410406	13410805	.	+	.	Parent=Os05t0299500-01
Chr05	irgsp1_rep	mRNA	13411037	13413325	.	-	.	ID=Os05t0299600-01;Name=Os05t0299600-01;Locus_id=Os05g0299600;Note=Conserved hypothetical protein.;Transcript_evidence=AK100896 (DDBJ%2C Best hit);ORF_evidence=B9FK46 (UniProt);NIAS_FLcDNA=J023131C09;TENOR=Os05t0299600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	13413175	13413325	.	-	.	Parent=Os05t0299600-01
Chr05	irgsp1_rep	CDS	13413074	13413174	.	-	0	Parent=Os05t0299600-01
Chr05	irgsp1_rep	CDS	13412778	13412955	.	-	1	Parent=Os05t0299600-01
Chr05	irgsp1_rep	three_prime_UTR	13411037	13412777	.	-	.	Parent=Os05t0299600-01
Chr05	irgsp1_rep	mRNA	13421645	13424003	.	-	.	ID=Os05t0299700-01;Name=Os05t0299700-01;Locus_id=Os05g0299700;CGSNL Gene Symbol=SAP15;CGSNL Gene Name=STRESS ASSOCIATED PROTEIN GENE 15;Oryzabase Gene Symbol Synonym(s)=OsSAP15;Oryzabase Gene Name Synonym(s)=stress-associated protein 15;Note=Similar to Expressed protein (Zinc finger-like protein).;Transcript_evidence=AK072411 (DDBJ%2C Best hit);ORF_evidence=Q0DJC7 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C AN1-type (IPR000058);NIAS_FLcDNA=J023084O03;Oryzabase=18190;Expression=AK072411;TENOR=Os05t0299700-01;KEGG=Os05t0299700-01
Chr05	irgsp1_rep	five_prime_UTR	13423126	13424003	.	-	.	Parent=Os05t0299700-01
Chr05	irgsp1_rep	CDS	13422601	13423125	.	-	0	Parent=Os05t0299700-01
Chr05	irgsp1_rep	three_prime_UTR	13421645	13422600	.	-	.	Parent=Os05t0299700-01
Chr05	irgsp1_rep	mRNA	13475813	13483058	.	+	.	ID=Os05t0300700-01;Name=Os05t0300700-01;Locus_id=Os05g0300700;Note=Cell division cycle-associated protein domain containing protein.;Transcript_evidence=AK067846 (DDBJ%2C Best hit);ORF_evidence=B9FK50 (UniProt);InterPro=Zinc-finger domain of monoamine-oxidase A repressor R1 (IPR018866);NIAS_FLcDNA=J013127H21;Expression=AK067846;TENOR=Os05t0300700-01;KEGG=Os05t0300700-01
Chr05	irgsp1_rep	five_prime_UTR	13475813	13475981	.	+	.	Parent=Os05t0300700-01
Chr05	irgsp1_rep	CDS	13475982	13476413	.	+	0	Parent=Os05t0300700-01
Chr05	irgsp1_rep	CDS	13476633	13476733	.	+	0	Parent=Os05t0300700-01
Chr05	irgsp1_rep	CDS	13476828	13476914	.	+	1	Parent=Os05t0300700-01
Chr05	irgsp1_rep	CDS	13477014	13477164	.	+	1	Parent=Os05t0300700-01
Chr05	irgsp1_rep	CDS	13477281	13477571	.	+	0	Parent=Os05t0300700-01
Chr05	irgsp1_rep	CDS	13479513	13479652	.	+	0	Parent=Os05t0300700-01
Chr05	irgsp1_rep	CDS	13479731	13479922	.	+	1	Parent=Os05t0300700-01
Chr05	irgsp1_rep	CDS	13480014	13480086	.	+	1	Parent=Os05t0300700-01
Chr05	irgsp1_rep	CDS	13480163	13480307	.	+	0	Parent=Os05t0300700-01
Chr05	irgsp1_rep	CDS	13480472	13480579	.	+	2	Parent=Os05t0300700-01
Chr05	irgsp1_rep	CDS	13480668	13480761	.	+	2	Parent=Os05t0300700-01
Chr05	irgsp1_rep	CDS	13482120	13482153	.	+	1	Parent=Os05t0300700-01
Chr05	irgsp1_rep	three_prime_UTR	13482154	13482193	.	+	.	Parent=Os05t0300700-01
Chr05	irgsp1_rep	three_prime_UTR	13482691	13483058	.	+	.	Parent=Os05t0300700-01
Chr05	irgsp1_rep	mRNA	13476020	13477796	.	+	.	ID=Os05t0300700-02;Name=Os05t0300700-02;Locus_id=Os05g0300700;Note=Hypothetical conserved gene.;Transcript_evidence=AK063728 (DDBJ%2C Best hit);ORF_evidence=B9FK50 (UniProt);InterPro=Zinc-finger domain of monoamine-oxidase A repressor R1 (IPR018866);NIAS_FLcDNA=001-120-E02;Expression=AK063728;TENOR=Os05t0300700-02;KEGG=Os05t0300700-02
Chr05	irgsp1_rep	five_prime_UTR	13476020	13476218	.	+	.	Parent=Os05t0300700-02
Chr05	irgsp1_rep	CDS	13476219	13476413	.	+	0	Parent=Os05t0300700-02
Chr05	irgsp1_rep	CDS	13476633	13476733	.	+	0	Parent=Os05t0300700-02
Chr05	irgsp1_rep	CDS	13476828	13476914	.	+	1	Parent=Os05t0300700-02
Chr05	irgsp1_rep	CDS	13477014	13477164	.	+	1	Parent=Os05t0300700-02
Chr05	irgsp1_rep	CDS	13477281	13477634	.	+	0	Parent=Os05t0300700-02
Chr05	irgsp1_rep	three_prime_UTR	13477635	13477796	.	+	.	Parent=Os05t0300700-02
Chr05	irgsp1_rep	mRNA	13529551	13534292	.	+	.	ID=Os05t0301500-01;Name=Os05t0301500-01;Locus_id=Os05g0301500;Oryzabase Gene Name Synonym(s)=Glycosyltransferase 67 kDa subunit precursor%2C Ribophorin I;Note=Similar to Ribophorin I (Fragment).;Transcript_evidence=AK070329 (DDBJ%2C Best hit);ORF_evidence=NP_001151620.1 (RefSeq);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: endoplasmic reticulum (GO:0005783),Cellular Component: integral to membrane (GO:0016021),Molecular Function: dolichyl-diphosphooligosaccharide-protein glycotransferase activity (GO:0004579);InterPro=Ribophorin I (IPR007676);NIAS_FLcDNA=J023048G03;Oryzabase=15259;Expression=AK070329;TENOR=Os05t0301500-01;KEGG=Os05t0301500-01
Chr05	irgsp1_rep	five_prime_UTR	13529551	13529612	.	+	.	Parent=Os05t0301500-01
Chr05	irgsp1_rep	CDS	13529613	13529726	.	+	0	Parent=Os05t0301500-01
Chr05	irgsp1_rep	CDS	13529845	13529889	.	+	0	Parent=Os05t0301500-01
Chr05	irgsp1_rep	CDS	13530459	13531087	.	+	0	Parent=Os05t0301500-01
Chr05	irgsp1_rep	CDS	13531182	13531329	.	+	1	Parent=Os05t0301500-01
Chr05	irgsp1_rep	CDS	13531426	13531602	.	+	0	Parent=Os05t0301500-01
Chr05	irgsp1_rep	CDS	13531982	13532050	.	+	0	Parent=Os05t0301500-01
Chr05	irgsp1_rep	CDS	13532154	13532243	.	+	0	Parent=Os05t0301500-01
Chr05	irgsp1_rep	CDS	13532455	13532613	.	+	0	Parent=Os05t0301500-01
Chr05	irgsp1_rep	CDS	13533464	13533688	.	+	0	Parent=Os05t0301500-01
Chr05	irgsp1_rep	CDS	13533849	13534040	.	+	0	Parent=Os05t0301500-01
Chr05	irgsp1_rep	three_prime_UTR	13534041	13534292	.	+	.	Parent=Os05t0301500-01
Chr05	irgsp1_rep	mRNA	13529578	13531545	.	+	.	ID=Os05t0301500-02;Name=Os05t0301500-02;Locus_id=Os05g0301500;Oryzabase Gene Name Synonym(s)=Glycosyltransferase 67 kDa subunit precursor%2C Ribophorin I;Note=Similar to dolichyl-diphosphooligosaccharide--protein glycosyltransferase 67 kDasubunit.;Transcript_evidence=AK067027 (DDBJ%2C Best hit);ORF_evidence=NP_001151620.1 (RefSeq);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: endoplasmic reticulum (GO:0005783),Cellular Component: integral to membrane (GO:0016021),Molecular Function: dolichyl-diphosphooligosaccharide-protein glycotransferase activity (GO:0004579);InterPro=Ribophorin I (IPR007676);NIAS_FLcDNA=J013092N03;Oryzabase=15259;Expression=AK067027;TENOR=Os05t0301500-02;KEGG=Os05t0301500-02
Chr05	irgsp1_rep	five_prime_UTR	13529578	13529612	.	+	.	Parent=Os05t0301500-02
Chr05	irgsp1_rep	CDS	13529613	13529726	.	+	0	Parent=Os05t0301500-02
Chr05	irgsp1_rep	CDS	13529845	13529889	.	+	0	Parent=Os05t0301500-02
Chr05	irgsp1_rep	CDS	13530459	13531087	.	+	0	Parent=Os05t0301500-02
Chr05	irgsp1_rep	CDS	13531182	13531329	.	+	1	Parent=Os05t0301500-02
Chr05	irgsp1_rep	CDS	13531426	13531545	.	+	0	Parent=Os05t0301500-02
Chr05	irgsp1_rep	mRNA	13532183	13534291	.	+	.	ID=Os05t0301500-03;Name=Os05t0301500-03;Locus_id=Os05g0301500;Oryzabase Gene Name Synonym(s)=Glycosyltransferase 67 kDa subunit precursor%2C Ribophorin I;Note=Similar to dolichyl-diphosphooligosaccharide--protein glycosyltransferase 67 kDasubunit.;Transcript_evidence=AK059501 (DDBJ%2C Best hit),AK104884 (DDBJ%2C Best hit);ORF_evidence=NP_001151620.1 (RefSeq);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: endoplasmic reticulum (GO:0005783),Cellular Component: integral to membrane (GO:0016021),Molecular Function: dolichyl-diphosphooligosaccharide-protein glycotransferase activity (GO:0004579);InterPro=Ribophorin I (IPR007676);NIAS_FLcDNA=001-029-A03,001-045-A05;Oryzabase=15259;Expression=AK059501;TENOR=Os05t0301500-03;KEGG=Os05t0301500-03
Chr05	irgsp1_rep	five_prime_UTR	13532183	13532183	.	+	.	Parent=Os05t0301500-03
Chr05	irgsp1_rep	CDS	13532184	13532243	.	+	0	Parent=Os05t0301500-03
Chr05	irgsp1_rep	CDS	13532455	13532613	.	+	0	Parent=Os05t0301500-03
Chr05	irgsp1_rep	CDS	13533464	13533688	.	+	0	Parent=Os05t0301500-03
Chr05	irgsp1_rep	CDS	13533849	13534040	.	+	0	Parent=Os05t0301500-03
Chr05	irgsp1_rep	three_prime_UTR	13534041	13534291	.	+	.	Parent=Os05t0301500-03
Chr05	irgsp1_rep	mRNA	13536337	13541072	.	+	.	ID=Os05t0301600-01;Name=Os05t0301600-01;Locus_id=Os05g0301600;Note=Protein phosphatase inhibitor 2 (IPP-2) family protein.;Transcript_evidence=AK073928 (DDBJ%2C Best hit);ORF_evidence=NP_001147377.1 (RefSeq);GO=Biological Process: regulation of signal transduction (GO:0009966),Biological Process: regulation of phosphoprotein phosphatase activity (GO:0043666),Molecular Function: protein phosphatase inhibitor activity (GO:0004864);InterPro=Protein phosphatase inhibitor 2 (IPP-2) (IPR007062);NIAS_FLcDNA=J033073L20;Expression=AK073928;TENOR=Os05t0301600-01;KEGG=Os05t0301600-01
Chr05	irgsp1_rep	five_prime_UTR	13536337	13536507	.	+	.	Parent=Os05t0301600-01
Chr05	irgsp1_rep	five_prime_UTR	13538273	13538339	.	+	.	Parent=Os05t0301600-01
Chr05	irgsp1_rep	CDS	13538340	13538344	.	+	0	Parent=Os05t0301600-01
Chr05	irgsp1_rep	CDS	13539322	13539437	.	+	1	Parent=Os05t0301600-01
Chr05	irgsp1_rep	CDS	13539535	13539702	.	+	2	Parent=Os05t0301600-01
Chr05	irgsp1_rep	CDS	13540502	13540710	.	+	2	Parent=Os05t0301600-01
Chr05	irgsp1_rep	three_prime_UTR	13540711	13541072	.	+	.	Parent=Os05t0301600-01
Chr05	irgsp1_rep	mRNA	13543055	13547500	.	-	.	ID=Os05t0301700-01;Name=Os05t0301700-01;Locus_id=Os05g0301700;CGSNL Gene Symbol=CYTC1-1;CGSNL Gene Name=CYTOCHROME C1-1;Oryzabase Gene Symbol Synonym(s)=CytC1-1;Oryzabase Gene Name Synonym(s)=cytoChrome c1-1;Note=Similar to CytoChrome c1 (Fragment).;Transcript_evidence=AK070578 (DDBJ%2C Best hit);ORF_evidence=B6SWR9 (UniProt);GO=Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome c1 (IPR002326),CytoChrome c domain (IPR009056),CytoChrome c1%2C transmembrane anchor%2C C-terminal (IPR021157);NIAS_FLcDNA=J023061F14;Oryzabase=22431;Expression=AK070578;TENOR=Os05t0301700-01;KEGG=Os05t0301700-01 (EC:1.10.2.2)
Chr05	irgsp1_rep	five_prime_UTR	13547370	13547500	.	-	.	Parent=Os05t0301700-01
Chr05	irgsp1_rep	five_prime_UTR	13546150	13546213	.	-	.	Parent=Os05t0301700-01
Chr05	irgsp1_rep	five_prime_UTR	13545745	13545752	.	-	.	Parent=Os05t0301700-01
Chr05	irgsp1_rep	CDS	13545685	13545744	.	-	0	Parent=Os05t0301700-01
Chr05	irgsp1_rep	CDS	13544983	13545185	.	-	0	Parent=Os05t0301700-01
Chr05	irgsp1_rep	CDS	13544434	13544713	.	-	1	Parent=Os05t0301700-01
Chr05	irgsp1_rep	CDS	13544277	13544348	.	-	0	Parent=Os05t0301700-01
Chr05	irgsp1_rep	CDS	13543664	13543780	.	-	0	Parent=Os05t0301700-01
Chr05	irgsp1_rep	CDS	13543504	13543569	.	-	0	Parent=Os05t0301700-01
Chr05	irgsp1_rep	CDS	13543303	13543419	.	-	0	Parent=Os05t0301700-01
Chr05	irgsp1_rep	three_prime_UTR	13543055	13543302	.	-	.	Parent=Os05t0301700-01
Chr05	irgsp1_rep	mRNA	13573857	13579653	.	-	.	ID=Os05t0302300-01;Name=Os05t0302300-01;Locus_id=Os05g0302300;RAP-DB Gene Symbol Synonym(s)=JMJ704;RAP-DB Gene Name Synonym(s)=Jumonji 704;Oryzabase Gene Symbol Synonym(s)=JMJ704;Oryzabase Gene Name Synonym(s)=Jumonji 704;Note=Putative H3K4 demethylase%2C Regulation of bacterial blight defense response;Transcript_evidence=NM_001061672.1;ORF_evidence=Q0DJC2;GO=Cellular Component: nucleus (GO:0005634);InterPro=JmjN domain (IPR003349),JmjC domain (IPR003347),Zinc finger%2C C5HC2-type (IPR004198),FY-rich%2C N-terminal (IPR003888),FY-rich%2C C-terminal (IPR003889);NIAS_FLcDNA=J013065F17;Manual Curation=December 17%2C 2015;Literature_PMID=26646110;Oryzabase=15208;Expression=AK066463;TENOR=Os05t0302300-01;KEGG=Os05t0302300-01
Chr05	irgsp1_rep	five_prime_UTR	13579619	13579653	.	-	.	Parent=Os05t0302300-01
Chr05	irgsp1_rep	CDS	13579496	13579618	.	-	0	Parent=Os05t0302300-01
Chr05	irgsp1_rep	CDS	13578394	13578444	.	-	0	Parent=Os05t0302300-01
Chr05	irgsp1_rep	CDS	13578197	13578274	.	-	0	Parent=Os05t0302300-01
Chr05	irgsp1_rep	CDS	13577593	13578111	.	-	0	Parent=Os05t0302300-01
Chr05	irgsp1_rep	CDS	13577293	13577511	.	-	0	Parent=Os05t0302300-01
Chr05	irgsp1_rep	CDS	13576827	13576988	.	-	0	Parent=Os05t0302300-01
Chr05	irgsp1_rep	CDS	13576132	13576500	.	-	0	Parent=Os05t0302300-01
Chr05	irgsp1_rep	CDS	13575142	13576006	.	-	0	Parent=Os05t0302300-01
Chr05	irgsp1_rep	CDS	13574946	13575049	.	-	2	Parent=Os05t0302300-01
Chr05	irgsp1_rep	CDS	13574652	13574849	.	-	0	Parent=Os05t0302300-01
Chr05	irgsp1_rep	CDS	13574326	13574553	.	-	0	Parent=Os05t0302300-01
Chr05	irgsp1_rep	three_prime_UTR	13573857	13574325	.	-	.	Parent=Os05t0302300-01
Chr05	irgsp1_rep	mRNA	13578640	13582583	.	+	.	ID=Os05t0302350-01;Name=Os05t0302350-01;Locus_id=Os05g0302350;Note=Hypothetical gene.;Transcript_evidence=AK288599 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090052B07;TENOR=Os05t0302350-01;KEGG=Os05t0302350-01
Chr05	irgsp1_rep	five_prime_UTR	13578640	13579616	.	+	.	Parent=Os05t0302350-01
Chr05	irgsp1_rep	CDS	13579617	13579871	.	+	0	Parent=Os05t0302350-01
Chr05	irgsp1_rep	three_prime_UTR	13579872	13582583	.	+	.	Parent=Os05t0302350-01
Chr05	irgsp1_rep	mRNA	13589052	13590657	.	-	.	ID=Os05t0302400-00;Name=Os05t0302400-00;Locus_id=Os05g0302400;Note=Conserved hypothetical protein.;Transcript_evidence=BT067677 (DDBJ);ORF_evidence=NP_001049837.1 (RefSeq);TENOR=Os05t0302400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	13590559	13590657	.	-	.	Parent=Os05t0302400-00
Chr05	irgsp1_rep	five_prime_UTR	13590334	13590423	.	-	.	Parent=Os05t0302400-00
Chr05	irgsp1_rep	five_prime_UTR	13589662	13589782	.	-	.	Parent=Os05t0302400-00
Chr05	irgsp1_rep	five_prime_UTR	13589442	13589447	.	-	.	Parent=Os05t0302400-00
Chr05	irgsp1_rep	CDS	13589392	13589441	.	-	0	Parent=Os05t0302400-00
Chr05	irgsp1_rep	CDS	13589167	13589306	.	-	1	Parent=Os05t0302400-00
Chr05	irgsp1_rep	CDS	13589078	13589100	.	-	2	Parent=Os05t0302400-00
Chr05	irgsp1_rep	three_prime_UTR	13589052	13589077	.	-	.	Parent=Os05t0302400-00
Chr05	irgsp1_rep	mRNA	13606399	13607760	.	+	.	ID=Os05t0302600-01;Name=Os05t0302600-01;Locus_id=Os05g0302600;Note=TRAM%2C LAG1 and CLN8 homology domain containing protein.;Transcript_evidence=AK061205 (DDBJ%2C Best hit);ORF_evidence=NP_001152448.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=TRAM/LAG1/CLN8 homology domain (IPR006634);NIAS_FLcDNA=006-210-B06;Expression=AK061205;TENOR=Os05t0302600-01;KEGG=Os05t0302600-01
Chr05	irgsp1_rep	five_prime_UTR	13606399	13606613	.	+	.	Parent=Os05t0302600-01
Chr05	irgsp1_rep	CDS	13606614	13607384	.	+	0	Parent=Os05t0302600-01
Chr05	irgsp1_rep	three_prime_UTR	13607385	13607760	.	+	.	Parent=Os05t0302600-01
Chr05	irgsp1_rep	mRNA	13610642	13614124	.	-	.	ID=Os05t0302700-01;Name=Os05t0302700-01;Locus_id=Os05g0302700;Note=Similar to ATP/ADP carrier protein.;Transcript_evidence=AK103615 (DDBJ%2C Best hit),AK061642 (DDBJ%2C Best hit),AK103134 (DDBJ%2C Best hit);ORF_evidence=B4FSA7 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial inner membrane (GO:0005743),Molecular Function: transporter activity (GO:0005215),Molecular Function: binding (GO:0005488);InterPro=Mitochondrial carrier protein (IPR002067),Adenine nucleotide translocator 1 (IPR002113),Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J033133K22,001-036-B04,J033120D07;Expression=AK103615;TENOR=Os05t0302700-01;KEGG=Os05t0302700-01
Chr05	irgsp1_rep	five_prime_UTR	13614002	13614124	.	-	.	Parent=Os05t0302700-01
Chr05	irgsp1_rep	five_prime_UTR	13612343	13612356	.	-	.	Parent=Os05t0302700-01
Chr05	irgsp1_rep	CDS	13611869	13612342	.	-	0	Parent=Os05t0302700-01
Chr05	irgsp1_rep	CDS	13611425	13611796	.	-	0	Parent=Os05t0302700-01
Chr05	irgsp1_rep	CDS	13610920	13611216	.	-	0	Parent=Os05t0302700-01
Chr05	irgsp1_rep	three_prime_UTR	13610642	13610919	.	-	.	Parent=Os05t0302700-01
Chr05	irgsp1_rep	mRNA	13611424	13611662	.	+	.	ID=Os05t0302750-00;Name=Os05t0302750-00;Locus_id=Os05g0302750;Note=Hypothetical gene.;Transcript_evidence=BT086700 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0302750-00
Chr05	irgsp1_rep	five_prime_UTR	13611424	13611424	.	+	.	Parent=Os05t0302750-00
Chr05	irgsp1_rep	CDS	13611425	13611662	.	+	0	Parent=Os05t0302750-00
Chr05	irgsp1_rep	mRNA	13614525	13614694	.	+	.	ID=Os05t0302833-00;Name=Os05t0302833-00;Locus_id=Os05g0302833;Note=Non-protein coding transcript.;Transcript_evidence=BT086891 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0302833-00
Chr05	irgsp1_rep	exon	13614525	13614694	.	+	.	Parent=Os05t0302833-00
Chr05	irgsp1_rep	mRNA	13623201	13626329	.	-	.	ID=Os05t0302916-00;Name=Os05t0302916-00;Locus_id=Os05g0302916;Note=Hypothetical protein.;Transcript_evidence=tplb0044f08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0302916-00
Chr05	irgsp1_rep	five_prime_UTR	13626321	13626329	.	-	.	Parent=Os05t0302916-00
Chr05	irgsp1_rep	CDS	13625939	13626320	.	-	0	Parent=Os05t0302916-00
Chr05	irgsp1_rep	CDS	13625225	13625421	.	-	2	Parent=Os05t0302916-00
Chr05	irgsp1_rep	three_prime_UTR	13625210	13625224	.	-	.	Parent=Os05t0302916-00
Chr05	irgsp1_rep	three_prime_UTR	13624733	13624896	.	-	.	Parent=Os05t0302916-00
Chr05	irgsp1_rep	three_prime_UTR	13623201	13623519	.	-	.	Parent=Os05t0302916-00
Chr05	irgsp1_rep	mRNA	13621777	13627054	.	+	.	ID=Os05t0303000-01;Name=Os05t0303000-01;Locus_id=Os05g0303000;RAP-DB Gene Symbol Synonym(s)=OsHsp70CP1;RAP-DB Gene Name Synonym(s)=heat shock protein 70 chloroplast protein 1;CGSNL Gene Symbol=HSP70CP1;CGSNL Gene Name=HEAT SHOCK PROTEIN 70KD CHLOROPLAST PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsHsp70CP1;Oryzabase Gene Name Synonym(s)=heat shock protein 70 chloroplast protein 1;Note=Chloroplast-localized heat shock protein 70%2C Chloroplast differentiation under high temperature;Transcript_evidence=AK060410 (truncated),Inferred from literature;ORF_evidence=A0A1D6GK64;GO=Biological Process: protein folding (GO:0006457),Molecular Function: ATP binding (GO:0005524),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein 70kD%2C peptide-binding domain superfamily (IPR029047),Heat shock protein 70kD%2C C-terminal domain superfamily (IPR029048),Heat shock protein 70 family (IPR013126),Chaperone DnaK (IPR012725),Heat shock protein 70%2C conserved site (IPR018181);NIAS_FLcDNA=001-010-D10 (truncated);Manual Curation=December 7%2C 2018;Literature_PMID=23394789;Oryzabase=12278;TENOR=Os05t0303000-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=plastid (GO:0009536)
Chr05	irgsp1_rep	five_prime_UTR	13621777	13621898	.	+	.	Parent=Os05t0303000-01
Chr05	irgsp1_rep	CDS	13621899	13622396	.	+	0	Parent=Os05t0303000-01
Chr05	irgsp1_rep	CDS	13623166	13623418	.	+	0	Parent=Os05t0303000-01
Chr05	irgsp1_rep	CDS	13624049	13624128	.	+	2	Parent=Os05t0303000-01
Chr05	irgsp1_rep	CDS	13624706	13624848	.	+	0	Parent=Os05t0303000-01
Chr05	irgsp1_rep	CDS	13624967	13625065	.	+	1	Parent=Os05t0303000-01
Chr05	irgsp1_rep	CDS	13625240	13625429	.	+	1	Parent=Os05t0303000-01
Chr05	irgsp1_rep	CDS	13625959	13626357	.	+	0	Parent=Os05t0303000-01
Chr05	irgsp1_rep	CDS	13626448	13626855	.	+	0	Parent=Os05t0303000-01
Chr05	irgsp1_rep	three_prime_UTR	13626856	13627054	.	+	.	Parent=Os05t0303000-01
Chr05	irgsp1_rep	mRNA	13668409	13672099	.	-	.	ID=Os05t0303700-00;Name=Os05t0303700-00;Locus_id=Os05g0303700;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A2Y2Y7 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);TENOR=Os05t0303700-00;KEGG=Os05t0303700-00
Chr05	irgsp1_rep	CDS	13672000	13672099	.	-	0	Parent=Os05t0303700-00
Chr05	irgsp1_rep	CDS	13671350	13671505	.	-	2	Parent=Os05t0303700-00
Chr05	irgsp1_rep	CDS	13668409	13668917	.	-	2	Parent=Os05t0303700-00
Chr05	irgsp1_rep	mRNA	13702738	13706331	.	+	.	ID=Os05t0304100-01;Name=Os05t0304100-01;Locus_id=Os05g0304100;Note=Conserved hypothetical protein.;Transcript_evidence=AK101238 (DDBJ%2C Best hit);ORF_evidence=NP_001143218.1 (RefSeq);NIAS_FLcDNA=J033031L12;TENOR=Os05t0304100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	13702738	13702856	.	+	.	Parent=Os05t0304100-01
Chr05	irgsp1_rep	CDS	13702857	13703396	.	+	0	Parent=Os05t0304100-01
Chr05	irgsp1_rep	CDS	13704611	13704835	.	+	0	Parent=Os05t0304100-01
Chr05	irgsp1_rep	three_prime_UTR	13704836	13706331	.	+	.	Parent=Os05t0304100-01
Chr05	irgsp1_rep	mRNA	13709153	13711853	.	-	.	ID=Os05t0304200-01;Name=Os05t0304200-01;Locus_id=Os05g0304200;Note=PAP fibrillin family protein.;Transcript_evidence=AK099372 (DDBJ%2C Best hit),AK112073 (DDBJ%2C Best hit);ORF_evidence=Q5QJA9 (UniProt);GO=Cellular Component: chloroplast (GO:0009507),Molecular Function: structural molecule activity (GO:0005198);InterPro=Plastid lipid-associated protein/fibrillin conserved domain (IPR006843);NIAS_FLcDNA=J033060F06,001-121-G06;Expression=AK099372;TENOR=Os05t0304200-01;KEGG=Os05t0304200-01
Chr05	irgsp1_rep	five_prime_UTR	13711704	13711853	.	-	.	Parent=Os05t0304200-01
Chr05	irgsp1_rep	five_prime_UTR	13711473	13711590	.	-	.	Parent=Os05t0304200-01
Chr05	irgsp1_rep	CDS	13711188	13711472	.	-	0	Parent=Os05t0304200-01
Chr05	irgsp1_rep	CDS	13709483	13709515	.	-	0	Parent=Os05t0304200-01
Chr05	irgsp1_rep	CDS	13709221	13709376	.	-	0	Parent=Os05t0304200-01
Chr05	irgsp1_rep	three_prime_UTR	13709153	13709220	.	-	.	Parent=Os05t0304200-01
Chr05	irgsp1_rep	mRNA	13715958	13720932	.	+	.	ID=Os05t0304400-01;Name=Os05t0304400-01;Locus_id=Os05g0304400;Oryzabase Gene Symbol Synonym(s)=OsGDI2;Oryzabase Gene Name Synonym(s)=GDP dissociation inhibitor 2%2C GDP dissociation inhibitor2%2C GDP dissociation inhibitor protein OsGDI2%2C GDP-dissociation inhibitor 2;Note=Similar to GDP dissociation inhibitor protein OsGDI2.;Transcript_evidence=AK073143 (DDBJ%2C Best hit);ORF_evidence=O22471 (UniProt);GO=Biological Process: protein transport (GO:0015031),Molecular Function: Rab GDP-dissociation inhibitor activity (GO:0005093);InterPro=Rab GDI protein (IPR000806),GDP dissociation inhibitor (IPR018203);NIAS_FLcDNA=J033023F13;Oryzabase=11436;Expression=AK073143;TENOR=Os05t0304400-01;KEGG=Os05t0304400-01
Chr05	irgsp1_rep	five_prime_UTR	13715958	13716049	.	+	.	Parent=Os05t0304400-01
Chr05	irgsp1_rep	CDS	13716050	13716136	.	+	0	Parent=Os05t0304400-01
Chr05	irgsp1_rep	CDS	13716522	13716584	.	+	0	Parent=Os05t0304400-01
Chr05	irgsp1_rep	CDS	13716744	13716827	.	+	0	Parent=Os05t0304400-01
Chr05	irgsp1_rep	CDS	13717212	13717319	.	+	0	Parent=Os05t0304400-01
Chr05	irgsp1_rep	CDS	13717473	13717645	.	+	0	Parent=Os05t0304400-01
Chr05	irgsp1_rep	CDS	13718645	13718756	.	+	1	Parent=Os05t0304400-01
Chr05	irgsp1_rep	CDS	13718879	13718959	.	+	0	Parent=Os05t0304400-01
Chr05	irgsp1_rep	CDS	13719066	13719128	.	+	0	Parent=Os05t0304400-01
Chr05	irgsp1_rep	CDS	13719219	13719320	.	+	0	Parent=Os05t0304400-01
Chr05	irgsp1_rep	CDS	13719518	13719642	.	+	0	Parent=Os05t0304400-01
Chr05	irgsp1_rep	CDS	13719771	13719981	.	+	1	Parent=Os05t0304400-01
Chr05	irgsp1_rep	CDS	13720069	13720143	.	+	0	Parent=Os05t0304400-01
Chr05	irgsp1_rep	CDS	13720405	13720458	.	+	0	Parent=Os05t0304400-01
Chr05	irgsp1_rep	three_prime_UTR	13720459	13720932	.	+	.	Parent=Os05t0304400-01
Chr05	irgsp1_rep	mRNA	13734521	13735493	.	-	.	ID=Os05t0304501-00;Name=Os05t0304501-00;Locus_id=Os05g0304501;Note=Hypothetical gene.;Transcript_evidence=CT833082 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os05t0304501-00;KEGG=Os05t0304501-00
Chr05	irgsp1_rep	five_prime_UTR	13735487	13735493	.	-	.	Parent=Os05t0304501-00
Chr05	irgsp1_rep	CDS	13734995	13735486	.	-	0	Parent=Os05t0304501-00
Chr05	irgsp1_rep	three_prime_UTR	13734521	13734994	.	-	.	Parent=Os05t0304501-00
Chr05	irgsp1_rep	mRNA	13734777	13740470	.	+	.	ID=Os05t0304600-01;Name=Os05t0304600-01;Locus_id=Os05g0304600;CGSNL Gene Symbol=LOX7;CGSNL Gene Name=LIPOXYGENASE 7;Oryzabase Gene Symbol Synonym(s)=OsLOX7;Oryzabase Gene Name Synonym(s)=lipoxygenase 7;Note=Similar to Lipoxygenase (Fragment).;Transcript_evidence=AK064795 (DDBJ%2C Best hit);ORF_evidence=B8AWC1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: protein binding (GO:0005515),Molecular Function: lipoxygenase activity (GO:0016165),Molecular Function: oxidoreductase activity%2C acting on single donors with incorporation of molecular oxygen%2C incorporation of two atoms of oxygen (GO:0016702),Molecular Function: metal ion binding (GO:0046872);InterPro=Lipoxygenase (IPR000907),Lipoxygenase%2C LH2 (IPR001024),Lipoxygenase%2C plant (IPR001246),Lipase/lipooxygenase%2C PLAT/LH2 (IPR008976),Lipoxygenase%2C C-terminal (IPR013819),Lipoxygenase%2C conserved site (IPR020834);NIAS_FLcDNA=J013000C19;Oryzabase=10391;Expression=AK064795;TENOR=Os05t0304600-01;KEGG=Os05t0304600-01 (EC:1.13.11.12)
Chr05	irgsp1_rep	five_prime_UTR	13734777	13735030	.	+	.	Parent=Os05t0304600-01
Chr05	irgsp1_rep	CDS	13735031	13735199	.	+	0	Parent=Os05t0304600-01
Chr05	irgsp1_rep	CDS	13735276	13735559	.	+	2	Parent=Os05t0304600-01
Chr05	irgsp1_rep	CDS	13736052	13736289	.	+	0	Parent=Os05t0304600-01
Chr05	irgsp1_rep	CDS	13736469	13736819	.	+	2	Parent=Os05t0304600-01
Chr05	irgsp1_rep	CDS	13736912	13736997	.	+	2	Parent=Os05t0304600-01
Chr05	irgsp1_rep	CDS	13737140	13737214	.	+	0	Parent=Os05t0304600-01
Chr05	irgsp1_rep	CDS	13737696	13737997	.	+	0	Parent=Os05t0304600-01
Chr05	irgsp1_rep	CDS	13738814	13739077	.	+	1	Parent=Os05t0304600-01
Chr05	irgsp1_rep	CDS	13739487	13740261	.	+	1	Parent=Os05t0304600-01
Chr05	irgsp1_rep	three_prime_UTR	13740262	13740470	.	+	.	Parent=Os05t0304600-01
Chr05	irgsp1_rep	mRNA	13736051	13740445	.	+	.	ID=Os05t0304600-02;Name=Os05t0304600-02;Locus_id=Os05g0304600;CGSNL Gene Symbol=LOX7;CGSNL Gene Name=LIPOXYGENASE 7;Oryzabase Gene Symbol Synonym(s)=OsLOX7;Oryzabase Gene Name Synonym(s)=lipoxygenase 7;Note=Similar to Lipoxygenase.;Transcript_evidence=AK060791 (DDBJ%2C Best hit);ORF_evidence=B8AWC1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: lipoxygenase activity (GO:0016165),Molecular Function: oxidoreductase activity%2C acting on single donors with incorporation of molecular oxygen%2C incorporation of two atoms of oxygen (GO:0016702),Molecular Function: metal ion binding (GO:0046872);InterPro=Lipoxygenase (IPR000907),Lipoxygenase%2C plant (IPR001246),Lipoxygenase%2C C-terminal (IPR013819),Lipoxygenase%2C conserved site (IPR020834);NIAS_FLcDNA=001-033-E01;Oryzabase=10391;Expression=AK060791;TENOR=Os05t0304600-02;KEGG=Os05t0304600-02 (EC:1.13.11.12)
Chr05	irgsp1_rep	five_prime_UTR	13736051	13736051	.	+	.	Parent=Os05t0304600-02
Chr05	irgsp1_rep	CDS	13736052	13736289	.	+	0	Parent=Os05t0304600-02
Chr05	irgsp1_rep	CDS	13736469	13736819	.	+	2	Parent=Os05t0304600-02
Chr05	irgsp1_rep	CDS	13736912	13736997	.	+	2	Parent=Os05t0304600-02
Chr05	irgsp1_rep	CDS	13737140	13737214	.	+	0	Parent=Os05t0304600-02
Chr05	irgsp1_rep	CDS	13737696	13737997	.	+	0	Parent=Os05t0304600-02
Chr05	irgsp1_rep	CDS	13738814	13739077	.	+	1	Parent=Os05t0304600-02
Chr05	irgsp1_rep	CDS	13739487	13740261	.	+	1	Parent=Os05t0304600-02
Chr05	irgsp1_rep	three_prime_UTR	13740262	13740445	.	+	.	Parent=Os05t0304600-02
Chr05	irgsp1_rep	mRNA	13739484	13740261	.	-	.	ID=Os05t0304701-00;Name=Os05t0304701-00;Locus_id=Os05g0304701;Note=Hypothetical gene.;Transcript_evidence=EU945269 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0304701-00
Chr05	irgsp1_rep	CDS	13739484	13740261	.	-	0	Parent=Os05t0304701-00
Chr05	irgsp1_rep	mRNA	13749904	13751460	.	+	.	ID=Os05t0304800-01;Name=Os05t0304800-01;Locus_id=Os05g0304800;CGSNL Gene Symbol=HAP5K;CGSNL Gene Name=HAP5K SUBUNIT OF CCAAT-BOX BINDING COMPLEX;Oryzabase Gene Symbol Synonym(s)=OsHAP5K%2C OsNF-YC11%2C NF-YC11%2C OsNF-YC12%2C NF-YC12%2C NFYC12;Oryzabase Gene Name Synonym(s)=Nuclear Factor Y subunit C11%2C NUCLEAR FACTOR-Y subunit C12%2C NUCLEAR FACTOR-Y subunit NF-YC12%2C NF-YC transcription factor 12%2C NF-YC subunit 12%2C NF-YC family 12;Note=Histone-fold domain containing protein.;Transcript_evidence=AK242136 (DDBJ%2C Best hit);ORF_evidence=NP_001055144.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Transcription factor CBF/NF-Y/archaeal histone (IPR003958),Histone-fold (IPR009072);NIAS_FLcDNA=J075149P12;Oryzabase=20926;TENOR=Os05t0304800-01;KEGG=Os05t0304800-01
Chr05	irgsp1_rep	five_prime_UTR	13749904	13749955	.	+	.	Parent=Os05t0304800-01
Chr05	irgsp1_rep	five_prime_UTR	13750153	13750162	.	+	.	Parent=Os05t0304800-01
Chr05	irgsp1_rep	CDS	13750163	13751146	.	+	0	Parent=Os05t0304800-01
Chr05	irgsp1_rep	three_prime_UTR	13751147	13751460	.	+	.	Parent=Os05t0304800-01
Chr05	irgsp1_rep	mRNA	13755590	13758581	.	-	.	ID=Os05t0304900-01;Name=Os05t0304900-01;Locus_id=Os05g0304900;Note=Similar to hydrolase%2C hydrolyzing O-glycosyl compounds.;Transcript_evidence=AK105545 (DDBJ%2C Best hit);ORF_evidence=NP_001152556.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 10 (IPR001000),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-128-A03;TENOR=Os05t0304900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	13758580	13758581	.	-	.	Parent=Os05t0304900-01
Chr05	irgsp1_rep	CDS	13758510	13758579	.	-	0	Parent=Os05t0304900-01
Chr05	irgsp1_rep	CDS	13758064	13758239	.	-	2	Parent=Os05t0304900-01
Chr05	irgsp1_rep	CDS	13757819	13757920	.	-	0	Parent=Os05t0304900-01
Chr05	irgsp1_rep	CDS	13757486	13757632	.	-	0	Parent=Os05t0304900-01
Chr05	irgsp1_rep	CDS	13756293	13756931	.	-	0	Parent=Os05t0304900-01
Chr05	irgsp1_rep	CDS	13755696	13756046	.	-	0	Parent=Os05t0304900-01
Chr05	irgsp1_rep	three_prime_UTR	13755590	13755695	.	-	.	Parent=Os05t0304900-01
Chr05	irgsp1_rep	mRNA	13762103	13763364	.	-	.	ID=Os05t0305000-00;Name=Os05t0305000-00;Locus_id=Os05g0305000;Note=Similar to hydrolase%2C hydrolyzing O-glycosyl compounds.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001152556.1 (RefSeq);TENOR=Os05t0305000-00;KEGG=Os05t0305000-00
Chr05	irgsp1_rep	CDS	13763226	13763364	.	-	0	Parent=Os05t0305000-00
Chr05	irgsp1_rep	CDS	13763084	13763118	.	-	2	Parent=Os05t0305000-00
Chr05	irgsp1_rep	CDS	13762673	13762823	.	-	0	Parent=Os05t0305000-00
Chr05	irgsp1_rep	CDS	13762103	13762164	.	-	2	Parent=Os05t0305000-00
Chr05	irgsp1_rep	mRNA	13772401	13781908	.	+	.	ID=Os05t0305100-01;Name=Os05t0305100-01;Locus_id=Os05g0305100;Note=Similar to Transcription factor IIIB 90 kDa subunit (TFIIIB90) (hTFIIIB90) (B- related factor 1) (BRF-1) (hBRF) (TATA box-binding protein-associated factor%2C RNA polymerase III%2C subunit 2) (TAF3B2). Splice isoform 2.;Transcript_evidence=AK099553 (DDBJ%2C Best hit);ORF_evidence=B8AWC3 (UniProt);GO=Biological Process: transcription initiation%2C DNA-dependent (GO:0006352),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: translational initiation (GO:0006413),Biological Process: positive regulation of transcription%2C DNA-dependent (GO:0045893),Cellular Component: nucleus (GO:0005634),Molecular Function: translation initiation factor activity (GO:0003743),Molecular Function: zinc ion binding (GO:0008270);InterPro=Transcription factor TFIIB (IPR000812),Brf1-like TBP-binding (IPR011665),Transcription factor TFIIB%2C cyclin-related (IPR013150),Cyclin-like (IPR013763);NIAS_FLcDNA=J013033K16;Expression=AK099553;TENOR=Os05t0305100-01;KEGG=Os05t0305100-01
Chr05	irgsp1_rep	five_prime_UTR	13772401	13772581	.	+	.	Parent=Os05t0305100-01
Chr05	irgsp1_rep	five_prime_UTR	13772880	13772930	.	+	.	Parent=Os05t0305100-01
Chr05	irgsp1_rep	CDS	13772931	13772992	.	+	0	Parent=Os05t0305100-01
Chr05	irgsp1_rep	CDS	13773157	13773238	.	+	1	Parent=Os05t0305100-01
Chr05	irgsp1_rep	CDS	13773320	13773395	.	+	0	Parent=Os05t0305100-01
Chr05	irgsp1_rep	CDS	13773471	13773556	.	+	2	Parent=Os05t0305100-01
Chr05	irgsp1_rep	CDS	13773749	13773825	.	+	0	Parent=Os05t0305100-01
Chr05	irgsp1_rep	CDS	13774593	13774649	.	+	1	Parent=Os05t0305100-01
Chr05	irgsp1_rep	CDS	13774721	13774833	.	+	1	Parent=Os05t0305100-01
Chr05	irgsp1_rep	CDS	13775636	13775710	.	+	2	Parent=Os05t0305100-01
Chr05	irgsp1_rep	CDS	13775781	13775872	.	+	2	Parent=Os05t0305100-01
Chr05	irgsp1_rep	CDS	13776058	13776138	.	+	0	Parent=Os05t0305100-01
Chr05	irgsp1_rep	CDS	13777203	13777340	.	+	0	Parent=Os05t0305100-01
Chr05	irgsp1_rep	CDS	13777417	13777602	.	+	0	Parent=Os05t0305100-01
Chr05	irgsp1_rep	CDS	13779109	13779193	.	+	0	Parent=Os05t0305100-01
Chr05	irgsp1_rep	CDS	13779305	13779363	.	+	2	Parent=Os05t0305100-01
Chr05	irgsp1_rep	CDS	13779494	13779574	.	+	0	Parent=Os05t0305100-01
Chr05	irgsp1_rep	CDS	13779656	13779730	.	+	0	Parent=Os05t0305100-01
Chr05	irgsp1_rep	CDS	13779816	13779899	.	+	0	Parent=Os05t0305100-01
Chr05	irgsp1_rep	CDS	13781013	13781060	.	+	0	Parent=Os05t0305100-01
Chr05	irgsp1_rep	CDS	13781472	13781639	.	+	0	Parent=Os05t0305100-01
Chr05	irgsp1_rep	three_prime_UTR	13781640	13781908	.	+	.	Parent=Os05t0305100-01
Chr05	irgsp1_rep	mRNA	13773469	13781605	.	-	.	ID=Os05t0305150-00;Name=Os05t0305150-00;Locus_id=Os05g0305150;Note=Hypothetical protein.;Transcript_evidence=tplb0062e18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0305150-00
Chr05	irgsp1_rep	five_prime_UTR	13781444	13781605	.	-	.	Parent=Os05t0305150-00
Chr05	irgsp1_rep	five_prime_UTR	13779826	13779925	.	-	.	Parent=Os05t0305150-00
Chr05	irgsp1_rep	five_prime_UTR	13779660	13779743	.	-	.	Parent=Os05t0305150-00
Chr05	irgsp1_rep	five_prime_UTR	13779470	13779578	.	-	.	Parent=Os05t0305150-00
Chr05	irgsp1_rep	five_prime_UTR	13779135	13779225	.	-	.	Parent=Os05t0305150-00
Chr05	irgsp1_rep	five_prime_UTR	13777587	13777627	.	-	.	Parent=Os05t0305150-00
Chr05	irgsp1_rep	CDS	13777427	13777586	.	-	0	Parent=Os05t0305150-00
Chr05	irgsp1_rep	CDS	13777246	13777349	.	-	2	Parent=Os05t0305150-00
Chr05	irgsp1_rep	three_prime_UTR	13777202	13777245	.	-	.	Parent=Os05t0305150-00
Chr05	irgsp1_rep	three_prime_UTR	13776057	13776137	.	-	.	Parent=Os05t0305150-00
Chr05	irgsp1_rep	three_prime_UTR	13775788	13775871	.	-	.	Parent=Os05t0305150-00
Chr05	irgsp1_rep	three_prime_UTR	13775636	13775716	.	-	.	Parent=Os05t0305150-00
Chr05	irgsp1_rep	three_prime_UTR	13774721	13774833	.	-	.	Parent=Os05t0305150-00
Chr05	irgsp1_rep	three_prime_UTR	13774577	13774649	.	-	.	Parent=Os05t0305150-00
Chr05	irgsp1_rep	three_prime_UTR	13773761	13773808	.	-	.	Parent=Os05t0305150-00
Chr05	irgsp1_rep	three_prime_UTR	13773469	13773564	.	-	.	Parent=Os05t0305150-00
Chr05	irgsp1_rep	mRNA	13783239	13785396	.	+	.	ID=Os05t0305200-01;Name=Os05t0305200-01;Locus_id=Os05g0305200;Note=Similar to TRAF-type zinc finger family protein.;Transcript_evidence=AK241429 (DDBJ%2C Best hit);ORF_evidence=Q2QWV7 (UniProt);GO=Biological Process: protein ubiquitination (GO:0016567),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C TRAF-type (IPR001293),TRAF-like (IPR008974),Seven In Absentia Homolog-type (IPR013323);NIAS_FLcDNA=J065161N15;TENOR=Os05t0305200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	13783239	13783366	.	+	.	Parent=Os05t0305200-01
Chr05	irgsp1_rep	five_prime_UTR	13783916	13783925	.	+	.	Parent=Os05t0305200-01
Chr05	irgsp1_rep	CDS	13783926	13784843	.	+	0	Parent=Os05t0305200-01
Chr05	irgsp1_rep	CDS	13785014	13785112	.	+	0	Parent=Os05t0305200-01
Chr05	irgsp1_rep	three_prime_UTR	13785113	13785396	.	+	.	Parent=Os05t0305200-01
Chr05	irgsp1_rep	mRNA	13795057	13799387	.	-	.	ID=Os05t0305300-00;Name=Os05t0305300-00;Locus_id=Os05g0305300;Note=Hypothetical conserved gene.;Transcript_evidence=AK122044 (DDBJ%2C Secondary hit);ORF_evidence=Q7XX33 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);Expression=AK122044;TENOR=Os05t0305300-00;KEGG=Os05t0305300-00
Chr05	irgsp1_rep	five_prime_UTR	13799304	13799387	.	-	.	Parent=Os05t0305300-00
Chr05	irgsp1_rep	five_prime_UTR	13797801	13799297	.	-	.	Parent=Os05t0305300-00
Chr05	irgsp1_rep	CDS	13795200	13797800	.	-	0	Parent=Os05t0305300-00
Chr05	irgsp1_rep	three_prime_UTR	13795057	13795199	.	-	.	Parent=Os05t0305300-00
Chr05	irgsp1_rep	mRNA	13817137	13822260	.	+	.	ID=Os05t0305600-01;Name=Os05t0305600-01;Locus_id=Os05g0305600;Note=Similar to Rp3-like disease resistance protein.;Transcript_evidence=AK067489 (DDBJ%2C Best hit),AK120506 (DDBJ%2C Best hit);ORF_evidence=B3VTC1 (UniProt);NIAS_FLcDNA=J013108O05,J013123C01;TENOR=Os05t0305600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	13817137	13817364	.	+	.	Parent=Os05t0305600-01
Chr05	irgsp1_rep	five_prime_UTR	13817675	13817698	.	+	.	Parent=Os05t0305600-01
Chr05	irgsp1_rep	CDS	13817699	13818040	.	+	0	Parent=Os05t0305600-01
Chr05	irgsp1_rep	three_prime_UTR	13818041	13821532	.	+	.	Parent=Os05t0305600-01
Chr05	irgsp1_rep	three_prime_UTR	13821835	13822260	.	+	.	Parent=Os05t0305600-01
Chr05	irgsp1_rep	mRNA	13823209	13828651	.	-	.	ID=Os05t0305700-01;Name=Os05t0305700-01;Locus_id=Os05g0305700;Note=Homeodomain-like containing protein.;Transcript_evidence=AK064721 (DDBJ%2C Best hit);ORF_evidence=Q01IQ4 (UniProt);InterPro=Protein of unknown function DUF3755 (IPR022228);NIAS_FLcDNA=002-118-E12;Expression=AK064721;TENOR=Os05t0305700-01;KEGG=Os05t0305700-01
Chr05	irgsp1_rep	five_prime_UTR	13828421	13828651	.	-	.	Parent=Os05t0305700-01
Chr05	irgsp1_rep	CDS	13828236	13828420	.	-	0	Parent=Os05t0305700-01
Chr05	irgsp1_rep	CDS	13826830	13826929	.	-	1	Parent=Os05t0305700-01
Chr05	irgsp1_rep	CDS	13825683	13825742	.	-	0	Parent=Os05t0305700-01
Chr05	irgsp1_rep	CDS	13825252	13825366	.	-	0	Parent=Os05t0305700-01
Chr05	irgsp1_rep	CDS	13824703	13824785	.	-	2	Parent=Os05t0305700-01
Chr05	irgsp1_rep	CDS	13824099	13824160	.	-	0	Parent=Os05t0305700-01
Chr05	irgsp1_rep	CDS	13823582	13823684	.	-	1	Parent=Os05t0305700-01
Chr05	irgsp1_rep	three_prime_UTR	13823209	13823581	.	-	.	Parent=Os05t0305700-01
Chr05	irgsp1_rep	mRNA	13834116	13839997	.	+	.	ID=Os05t0305900-01;Name=Os05t0305900-01;Locus_id=Os05g0305900;RAP-DB Gene Symbol Synonym(s)=OsSTLK;RAP-DB Gene Name Synonym(s)=Salt-Tolerance LRR-RLK;CGSNL Gene Symbol=STLK;CGSNL Gene Name=SALT-TOLERANCE LRR-RLK;Oryzabase Gene Symbol Synonym(s)=OsSTLK;Oryzabase Gene Name Synonym(s)=Salt-Tolerance LRR-RLK%2C Salt-Tolerance Leucine-rich repeat receptor-like kinase;Note=Leucine-rich repeat receptor-like kinase%2C Regulation of salt stress tolerance;Transcript_evidence=AK070624;ORF_evidence=A0A0P0WKH3;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Leucine-rich repeat domain superfamily (IPR032675),Protein kinase-like domain superfamily (IPR011009),Leucine-rich repeat-containing N-terminal%2C plant-type (IPR013210),Protein kinase domain (IPR000719),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J023062J22;Manual Curation=May 21%2C 2020;Literature_PMID=32540023;Oryzabase=18225;Expression=AK070624;TENOR=Os05t0305900-01;KEGG=Os05t0305900-01
Chr05	irgsp1_rep	five_prime_UTR	13834116	13834309	.	+	.	Parent=Os05t0305900-01
Chr05	irgsp1_rep	CDS	13834310	13834397	.	+	0	Parent=Os05t0305900-01
Chr05	irgsp1_rep	CDS	13835057	13835183	.	+	2	Parent=Os05t0305900-01
Chr05	irgsp1_rep	CDS	13835300	13835371	.	+	1	Parent=Os05t0305900-01
Chr05	irgsp1_rep	CDS	13835534	13835608	.	+	1	Parent=Os05t0305900-01
Chr05	irgsp1_rep	CDS	13835745	13835816	.	+	1	Parent=Os05t0305900-01
Chr05	irgsp1_rep	CDS	13835932	13836093	.	+	1	Parent=Os05t0305900-01
Chr05	irgsp1_rep	CDS	13836181	13836255	.	+	1	Parent=Os05t0305900-01
Chr05	irgsp1_rep	CDS	13836335	13836406	.	+	1	Parent=Os05t0305900-01
Chr05	irgsp1_rep	CDS	13836495	13836563	.	+	1	Parent=Os05t0305900-01
Chr05	irgsp1_rep	CDS	13836651	13836719	.	+	1	Parent=Os05t0305900-01
Chr05	irgsp1_rep	CDS	13836810	13836884	.	+	1	Parent=Os05t0305900-01
Chr05	irgsp1_rep	CDS	13836977	13837048	.	+	1	Parent=Os05t0305900-01
Chr05	irgsp1_rep	CDS	13837123	13837254	.	+	1	Parent=Os05t0305900-01
Chr05	irgsp1_rep	CDS	13837398	13837816	.	+	1	Parent=Os05t0305900-01
Chr05	irgsp1_rep	CDS	13837897	13838028	.	+	2	Parent=Os05t0305900-01
Chr05	irgsp1_rep	CDS	13838119	13838258	.	+	2	Parent=Os05t0305900-01
Chr05	irgsp1_rep	CDS	13838365	13838584	.	+	0	Parent=Os05t0305900-01
Chr05	irgsp1_rep	CDS	13838756	13838991	.	+	2	Parent=Os05t0305900-01
Chr05	irgsp1_rep	CDS	13839187	13839711	.	+	0	Parent=Os05t0305900-01
Chr05	irgsp1_rep	three_prime_UTR	13839712	13839997	.	+	.	Parent=Os05t0305900-01
Chr05	irgsp1_rep	mRNA	13838364	13839985	.	+	.	ID=Os05t0305900-02;Name=Os05t0305900-02;Locus_id=Os05g0305900;CGSNL Gene Symbol=STLK;CGSNL Gene Name=SALT-TOLERANCE LRR-RLK;Oryzabase Gene Symbol Synonym(s)=OsSTLK;Oryzabase Gene Name Synonym(s)=Salt-Tolerance LRR-RLK%2C Salt-Tolerance Leucine-rich repeat receptor-like kinase;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK104711 (DDBJ%2C Best hit);ORF_evidence=B6SP14 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-037-F07;Oryzabase=18225;Expression=AK104711;TENOR=Os05t0305900-02;KEGG=Os05t0305900-02
Chr05	irgsp1_rep	five_prime_UTR	13838364	13838364	.	+	.	Parent=Os05t0305900-02
Chr05	irgsp1_rep	CDS	13838365	13838584	.	+	0	Parent=Os05t0305900-02
Chr05	irgsp1_rep	CDS	13838756	13838991	.	+	2	Parent=Os05t0305900-02
Chr05	irgsp1_rep	CDS	13839187	13839711	.	+	0	Parent=Os05t0305900-02
Chr05	irgsp1_rep	three_prime_UTR	13839712	13839985	.	+	.	Parent=Os05t0305900-02
Chr05	irgsp1_rep	mRNA	13840559	13848909	.	-	.	ID=Os05t0306000-01;Name=Os05t0306000-01;Locus_id=Os05g0306000;Note=GOLD domain containing protein.;Transcript_evidence=AK071384 (DDBJ%2C Best hit);ORF_evidence=Q1STP4 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: integral to membrane (GO:0016021);InterPro=GOLD (IPR009038);NIAS_FLcDNA=J023093H10;Expression=AK071384;TENOR=Os05t0306000-01;KEGG=Os05t0306000-01
Chr05	irgsp1_rep	five_prime_UTR	13848770	13848909	.	-	.	Parent=Os05t0306000-01
Chr05	irgsp1_rep	CDS	13848607	13848769	.	-	0	Parent=Os05t0306000-01
Chr05	irgsp1_rep	CDS	13846254	13846381	.	-	2	Parent=Os05t0306000-01
Chr05	irgsp1_rep	CDS	13846041	13846173	.	-	0	Parent=Os05t0306000-01
Chr05	irgsp1_rep	CDS	13845591	13845747	.	-	2	Parent=Os05t0306000-01
Chr05	irgsp1_rep	CDS	13845436	13845514	.	-	1	Parent=Os05t0306000-01
Chr05	irgsp1_rep	CDS	13845169	13845209	.	-	0	Parent=Os05t0306000-01
Chr05	irgsp1_rep	CDS	13844916	13845032	.	-	1	Parent=Os05t0306000-01
Chr05	irgsp1_rep	CDS	13844721	13844801	.	-	1	Parent=Os05t0306000-01
Chr05	irgsp1_rep	CDS	13844126	13844185	.	-	1	Parent=Os05t0306000-01
Chr05	irgsp1_rep	CDS	13843958	13844009	.	-	1	Parent=Os05t0306000-01
Chr05	irgsp1_rep	CDS	13843701	13843781	.	-	0	Parent=Os05t0306000-01
Chr05	irgsp1_rep	CDS	13843173	13843220	.	-	0	Parent=Os05t0306000-01
Chr05	irgsp1_rep	CDS	13841706	13841741	.	-	0	Parent=Os05t0306000-01
Chr05	irgsp1_rep	CDS	13841391	13841465	.	-	0	Parent=Os05t0306000-01
Chr05	irgsp1_rep	CDS	13840861	13840929	.	-	0	Parent=Os05t0306000-01
Chr05	irgsp1_rep	three_prime_UTR	13840559	13840860	.	-	.	Parent=Os05t0306000-01
Chr05	irgsp1_rep	mRNA	13927674	13929113	.	+	.	ID=Os05t0307100-01;Name=Os05t0307100-01;Locus_id=Os05g0307100;Note=Similar to tetracycline transporter protein.;Transcript_evidence=AK242546 (DDBJ%2C Best hit);ORF_evidence=NP_001151277.1 (RefSeq);NIAS_FLcDNA=J080318H05;TENOR=Os05t0307100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	13927674	13927733	.	+	.	Parent=Os05t0307100-01
Chr05	irgsp1_rep	five_prime_UTR	13927832	13927864	.	+	.	Parent=Os05t0307100-01
Chr05	irgsp1_rep	five_prime_UTR	13927955	13928105	.	+	.	Parent=Os05t0307100-01
Chr05	irgsp1_rep	CDS	13928106	13928150	.	+	0	Parent=Os05t0307100-01
Chr05	irgsp1_rep	CDS	13928273	13928351	.	+	0	Parent=Os05t0307100-01
Chr05	irgsp1_rep	CDS	13928514	13928584	.	+	2	Parent=Os05t0307100-01
Chr05	irgsp1_rep	CDS	13928690	13928752	.	+	0	Parent=Os05t0307100-01
Chr05	irgsp1_rep	three_prime_UTR	13928753	13929113	.	+	.	Parent=Os05t0307100-01
Chr05	irgsp1_rep	mRNA	13930297	13932703	.	-	.	ID=Os05t0307200-00;Name=Os05t0307200-00;Locus_id=Os05g0307200;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK376552 (DDBJ);ORF_evidence=NP_001055155.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os05t0307200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	13931718	13932703	.	-	0	Parent=Os05t0307200-00
Chr05	irgsp1_rep	CDS	13930673	13931621	.	-	1	Parent=Os05t0307200-00
Chr05	irgsp1_rep	three_prime_UTR	13930297	13930672	.	-	.	Parent=Os05t0307200-00
Chr05	irgsp1_rep	mRNA	13930862	13932538	.	+	.	ID=Os05t0307300-00;Name=Os05t0307300-00;Locus_id=Os05g0307300;Note=Hypothetical protein.;Transcript_evidence=tplb0021n11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0307300-00
Chr05	irgsp1_rep	five_prime_UTR	13930862	13931575	.	+	.	Parent=Os05t0307300-00
Chr05	irgsp1_rep	five_prime_UTR	13931897	13932106	.	+	.	Parent=Os05t0307300-00
Chr05	irgsp1_rep	five_prime_UTR	13932173	13932198	.	+	.	Parent=Os05t0307300-00
Chr05	irgsp1_rep	CDS	13932199	13932435	.	+	0	Parent=Os05t0307300-00
Chr05	irgsp1_rep	three_prime_UTR	13932436	13932538	.	+	.	Parent=Os05t0307300-00
Chr05	irgsp1_rep	mRNA	13939693	13946672	.	-	.	ID=Os05t0307400-01;Name=Os05t0307400-01;Locus_id=Os05g0307400;CGSNL Gene Symbol=DRB1C;CGSNL Gene Name=DSRNA-BINDING PROTEIN 1C;Oryzabase Gene Symbol Synonym(s)=OsDRB1c%2C DRB1c;Oryzabase Gene Name Synonym(s)=dsRNA-binding protein 1c;Note=Similar to Regulatory associated protein of mTOR (Raptor) (P150 target of rapamycin (TOR)-scaffold protein).;Transcript_evidence=AK072444 (DDBJ%2C Best hit);ORF_evidence=Q0DJA3 (UniProt);GO=Biological Process: rRNA catabolic process (GO:0016075),Cellular Component: intracellular (GO:0005622),Molecular Function: RNA binding (GO:0003723),Molecular Function: double-stranded RNA binding (GO:0003725),Molecular Function: ribonuclease III activity (GO:0004525);InterPro=Double-stranded RNA-binding (IPR001159),Regulatory associated protein of TOR (IPR004083),Ribonuclease III%2C bacterial (IPR011907),Double-stranded RNA-binding-like (IPR014720);NIAS_FLcDNA=J023111A18;Oryzabase=22064;Expression=AK072444;TENOR=Os05t0307400-01;KEGG=Os05t0307400-01
Chr05	irgsp1_rep	five_prime_UTR	13946344	13946672	.	-	.	Parent=Os05t0307400-01
Chr05	irgsp1_rep	five_prime_UTR	13946187	13946195	.	-	.	Parent=Os05t0307400-01
Chr05	irgsp1_rep	CDS	13946102	13946186	.	-	0	Parent=Os05t0307400-01
Chr05	irgsp1_rep	CDS	13945530	13945789	.	-	2	Parent=Os05t0307400-01
Chr05	irgsp1_rep	CDS	13943007	13943220	.	-	0	Parent=Os05t0307400-01
Chr05	irgsp1_rep	CDS	13942346	13942869	.	-	2	Parent=Os05t0307400-01
Chr05	irgsp1_rep	CDS	13940733	13940835	.	-	0	Parent=Os05t0307400-01
Chr05	irgsp1_rep	CDS	13940065	13940147	.	-	2	Parent=Os05t0307400-01
Chr05	irgsp1_rep	CDS	13939944	13939988	.	-	0	Parent=Os05t0307400-01
Chr05	irgsp1_rep	three_prime_UTR	13939693	13939943	.	-	.	Parent=Os05t0307400-01
Chr05	irgsp1_rep	mRNA	14077219	14077931	.	-	.	ID=Os05t0309000-00;Name=Os05t0309000-00;Locus_id=Os05g0309000;Note=Hypothetical conserved gene.;Transcript_evidence=CU405578 (DDBJ%2C Best hit);ORF_evidence=B9FNS8 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase C48%2C SUMO/Sentrin/Ubl1 (IPR003653);TENOR=Os05t0309000-00;KEGG=Os05t0309000-00
Chr05	irgsp1_rep	five_prime_UTR	14077924	14077931	.	-	.	Parent=Os05t0309000-00
Chr05	irgsp1_rep	CDS	14077618	14077923	.	-	0	Parent=Os05t0309000-00
Chr05	irgsp1_rep	CDS	14077354	14077524	.	-	0	Parent=Os05t0309000-00
Chr05	irgsp1_rep	three_prime_UTR	14077219	14077353	.	-	.	Parent=Os05t0309000-00
Chr05	irgsp1_rep	mRNA	14161390	14165387	.	+	.	ID=Os05t0310500-01;Name=Os05t0310500-01;Locus_id=Os05g0310500;Oryzabase Gene Symbol Synonym(s)=OsCatB;Oryzabase Gene Name Synonym(s)=cysteine protease OsCatB;Note=Similar to Cathepsin B-like cysteine protease.;Transcript_evidence=AK101093 (DDBJ%2C Best hit),AK100225 (DDBJ%2C Best hit);ORF_evidence=Q5D214 (UniProt);GO=Biological Process: regulation of catalytic activity (GO:0050790),Molecular Function: cysteine-type endopeptidase activity (GO:0004197);InterPro=Peptidase C1A%2C propeptide (IPR012599);NIAS_FLcDNA=J033024N03,J023047M19;Oryzabase=11566;TENOR=Os05t0310500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	14161390	14161488	.	+	.	Parent=Os05t0310500-01
Chr05	irgsp1_rep	five_prime_UTR	14161597	14161688	.	+	.	Parent=Os05t0310500-01
Chr05	irgsp1_rep	CDS	14161689	14161742	.	+	0	Parent=Os05t0310500-01
Chr05	irgsp1_rep	CDS	14162849	14162923	.	+	0	Parent=Os05t0310500-01
Chr05	irgsp1_rep	CDS	14163017	14163097	.	+	0	Parent=Os05t0310500-01
Chr05	irgsp1_rep	CDS	14163233	14163393	.	+	0	Parent=Os05t0310500-01
Chr05	irgsp1_rep	CDS	14163607	14163681	.	+	1	Parent=Os05t0310500-01
Chr05	irgsp1_rep	CDS	14163787	14163787	.	+	1	Parent=Os05t0310500-01
Chr05	irgsp1_rep	three_prime_UTR	14163788	14163912	.	+	.	Parent=Os05t0310500-01
Chr05	irgsp1_rep	three_prime_UTR	14164059	14164277	.	+	.	Parent=Os05t0310500-01
Chr05	irgsp1_rep	three_prime_UTR	14164748	14164861	.	+	.	Parent=Os05t0310500-01
Chr05	irgsp1_rep	three_prime_UTR	14164953	14164988	.	+	.	Parent=Os05t0310500-01
Chr05	irgsp1_rep	three_prime_UTR	14165085	14165387	.	+	.	Parent=Os05t0310500-01
Chr05	irgsp1_rep	mRNA	14161396	14167285	.	+	.	ID=Os05t0310500-02;Name=Os05t0310500-02;Locus_id=Os05g0310500;Oryzabase Gene Symbol Synonym(s)=OsCatB;Oryzabase Gene Name Synonym(s)=cysteine protease OsCatB;Note=Similar to Cathepsin B-like cysteine protease.;Transcript_evidence=AK068459 (DDBJ%2C Best hit);ORF_evidence=Q5D214 (UniProt);GO=Biological Process: regulation of catalytic activity (GO:0050790),Molecular Function: cysteine-type endopeptidase activity (GO:0004197);InterPro=Peptidase C1A%2C propeptide (IPR012599);NIAS_FLcDNA=J013151C17;Oryzabase=11566;TENOR=Os05t0310500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	14161396	14161488	.	+	.	Parent=Os05t0310500-02
Chr05	irgsp1_rep	five_prime_UTR	14161597	14161688	.	+	.	Parent=Os05t0310500-02
Chr05	irgsp1_rep	CDS	14161689	14161742	.	+	0	Parent=Os05t0310500-02
Chr05	irgsp1_rep	CDS	14162849	14162923	.	+	0	Parent=Os05t0310500-02
Chr05	irgsp1_rep	CDS	14163017	14163393	.	+	0	Parent=Os05t0310500-02
Chr05	irgsp1_rep	CDS	14163607	14163681	.	+	1	Parent=Os05t0310500-02
Chr05	irgsp1_rep	CDS	14163787	14163787	.	+	1	Parent=Os05t0310500-02
Chr05	irgsp1_rep	three_prime_UTR	14163788	14163912	.	+	.	Parent=Os05t0310500-02
Chr05	irgsp1_rep	three_prime_UTR	14164059	14164277	.	+	.	Parent=Os05t0310500-02
Chr05	irgsp1_rep	three_prime_UTR	14164748	14164861	.	+	.	Parent=Os05t0310500-02
Chr05	irgsp1_rep	three_prime_UTR	14164953	14164988	.	+	.	Parent=Os05t0310500-02
Chr05	irgsp1_rep	three_prime_UTR	14165085	14167285	.	+	.	Parent=Os05t0310500-02
Chr05	irgsp1_rep	mRNA	14161567	14165585	.	+	.	ID=Os05t0310500-03;Name=Os05t0310500-03;Locus_id=Os05g0310500;Oryzabase Gene Symbol Synonym(s)=OsCatB;Oryzabase Gene Name Synonym(s)=cysteine protease OsCatB;Note=Similar to cDNA clone:J013151C17%2C full insert sequence.;Transcript_evidence=AK059697 (DDBJ%2C Best hit),AK064820 (DDBJ%2C Best hit);ORF_evidence=B7EEX2 (UniProt);GO=Biological Process: regulation of catalytic activity (GO:0050790),Molecular Function: cysteine-type endopeptidase activity (GO:0004197);InterPro=Peptidase C1A%2C propeptide (IPR012599);NIAS_FLcDNA=001-032-C04,J013000E23;Oryzabase=11566;TENOR=Os05t0310500-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	14161567	14161688	.	+	.	Parent=Os05t0310500-03
Chr05	irgsp1_rep	CDS	14161689	14161742	.	+	0	Parent=Os05t0310500-03
Chr05	irgsp1_rep	CDS	14162849	14162923	.	+	0	Parent=Os05t0310500-03
Chr05	irgsp1_rep	CDS	14163017	14163097	.	+	0	Parent=Os05t0310500-03
Chr05	irgsp1_rep	CDS	14163233	14163393	.	+	0	Parent=Os05t0310500-03
Chr05	irgsp1_rep	CDS	14163607	14163681	.	+	1	Parent=Os05t0310500-03
Chr05	irgsp1_rep	CDS	14163787	14163787	.	+	1	Parent=Os05t0310500-03
Chr05	irgsp1_rep	three_prime_UTR	14163788	14163912	.	+	.	Parent=Os05t0310500-03
Chr05	irgsp1_rep	three_prime_UTR	14164059	14164277	.	+	.	Parent=Os05t0310500-03
Chr05	irgsp1_rep	three_prime_UTR	14164748	14164861	.	+	.	Parent=Os05t0310500-03
Chr05	irgsp1_rep	three_prime_UTR	14164953	14164988	.	+	.	Parent=Os05t0310500-03
Chr05	irgsp1_rep	three_prime_UTR	14165085	14165585	.	+	.	Parent=Os05t0310500-03
Chr05	irgsp1_rep	mRNA	14165755	14168182	.	-	.	ID=Os05t0310600-01;Name=Os05t0310600-01;Locus_id=Os05g0310600;Note=NC domain containing protein.;Transcript_evidence=AK240681 (DDBJ%2C Best hit);ORF_evidence=XP_002884334.1 (RefSeq);InterPro=NC (IPR007053);NIAS_FLcDNA=J043001F02;TENOR=Os05t0310600-01;KEGG=Os05t0310600-01
Chr05	irgsp1_rep	five_prime_UTR	14167943	14168182	.	-	.	Parent=Os05t0310600-01
Chr05	irgsp1_rep	CDS	14167846	14167942	.	-	0	Parent=Os05t0310600-01
Chr05	irgsp1_rep	CDS	14166047	14166795	.	-	2	Parent=Os05t0310600-01
Chr05	irgsp1_rep	three_prime_UTR	14165755	14166046	.	-	.	Parent=Os05t0310600-01
Chr05	irgsp1_rep	mRNA	14178030	14178378	.	+	.	ID=Os05t0310750-00;Name=Os05t0310750-00;Locus_id=Os05g0310750;Note=UPF0103/Mediator of ErbB2-driven cell motility (Memo-related) domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FNT1 (UniProt);InterPro=UPF0103/Mediator of ErbB2-driven cell motility (Memo-related) (IPR002737);TENOR=Os05t0310750-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	14178030	14178137	.	+	0	Parent=Os05t0310750-00
Chr05	irgsp1_rep	CDS	14178223	14178378	.	+	0	Parent=Os05t0310750-00
Chr05	irgsp1_rep	mRNA	14181444	14186266	.	+	.	ID=Os05t0310800-01;Name=Os05t0310800-01;Locus_id=Os05g0310800;CGSNL Gene Symbol=DELTA-COP1;CGSNL Gene Name=COATOMER SUBUNIT DELTA PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=Delta-COP1;Oryzabase Gene Name Synonym(s)=coatomer subunit delta protein 1;Note=Similar to Coatomer delta subunit (Delta-coat protein) (Delta-COP).;Transcript_evidence=AK068582 (DDBJ%2C Best hit);ORF_evidence=NP_001149384.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: clathrin adaptor complex (GO:0030131),Molecular Function: protein binding (GO:0005515);InterPro=Clathrin adaptor%2C mu subunit%2C C-terminal (IPR008968),Longin-like (IPR011012);NIAS_FLcDNA=J013157O09;Oryzabase=23034;Expression=AK068582;TENOR=Os05t0310800-01;KEGG=Os05t0310800-01
Chr05	irgsp1_rep	five_prime_UTR	14181444	14181593	.	+	.	Parent=Os05t0310800-01
Chr05	irgsp1_rep	five_prime_UTR	14181856	14181916	.	+	.	Parent=Os05t0310800-01
Chr05	irgsp1_rep	CDS	14181917	14181919	.	+	0	Parent=Os05t0310800-01
Chr05	irgsp1_rep	CDS	14182040	14182079	.	+	0	Parent=Os05t0310800-01
Chr05	irgsp1_rep	CDS	14182457	14182680	.	+	2	Parent=Os05t0310800-01
Chr05	irgsp1_rep	CDS	14183089	14183331	.	+	0	Parent=Os05t0310800-01
Chr05	irgsp1_rep	CDS	14183600	14183768	.	+	0	Parent=Os05t0310800-01
Chr05	irgsp1_rep	CDS	14184024	14184328	.	+	2	Parent=Os05t0310800-01
Chr05	irgsp1_rep	CDS	14184780	14184966	.	+	0	Parent=Os05t0310800-01
Chr05	irgsp1_rep	CDS	14185077	14185230	.	+	2	Parent=Os05t0310800-01
Chr05	irgsp1_rep	CDS	14185600	14185662	.	+	1	Parent=Os05t0310800-01
Chr05	irgsp1_rep	CDS	14185755	14185851	.	+	1	Parent=Os05t0310800-01
Chr05	irgsp1_rep	CDS	14185955	14186044	.	+	0	Parent=Os05t0310800-01
Chr05	irgsp1_rep	three_prime_UTR	14186045	14186266	.	+	.	Parent=Os05t0310800-01
Chr05	irgsp1_rep	mRNA	14182455	14186083	.	-	.	ID=Os05t0310900-00;Name=Os05t0310900-00;Locus_id=Os05g0310900;Note=Hypothetical protein.;Transcript_evidence=tplb0060a06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0310900-00
Chr05	irgsp1_rep	five_prime_UTR	14185960	14186083	.	-	.	Parent=Os05t0310900-00
Chr05	irgsp1_rep	five_prime_UTR	14185809	14185860	.	-	.	Parent=Os05t0310900-00
Chr05	irgsp1_rep	CDS	14185734	14185808	.	-	0	Parent=Os05t0310900-00
Chr05	irgsp1_rep	CDS	14185091	14185276	.	-	0	Parent=Os05t0310900-00
Chr05	irgsp1_rep	three_prime_UTR	14185075	14185090	.	-	.	Parent=Os05t0310900-00
Chr05	irgsp1_rep	three_prime_UTR	14184774	14184964	.	-	.	Parent=Os05t0310900-00
Chr05	irgsp1_rep	three_prime_UTR	14183997	14184322	.	-	.	Parent=Os05t0310900-00
Chr05	irgsp1_rep	three_prime_UTR	14183616	14183742	.	-	.	Parent=Os05t0310900-00
Chr05	irgsp1_rep	three_prime_UTR	14183101	14183344	.	-	.	Parent=Os05t0310900-00
Chr05	irgsp1_rep	three_prime_UTR	14182455	14182685	.	-	.	Parent=Os05t0310900-00
Chr05	irgsp1_rep	mRNA	14191542	14197286	.	+	.	ID=Os05t0311000-01;Name=Os05t0311000-01;Locus_id=Os05g0311000;CGSNL Gene Symbol=DELTA-COP2;CGSNL Gene Name=COATOMER SUBUNIT DELTA PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=Delta-COP2;Oryzabase Gene Name Synonym(s)=coatomer subunit delta protein 2;Note=Clathrin adaptor%2C mu subunit%2C C-terminal domain containing protein.;Transcript_evidence=AK100520 (DDBJ%2C Best hit),AK099633 (DDBJ%2C Best hit),AK100201 (DDBJ%2C Best hit);ORF_evidence=NP_001149384.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: clathrin adaptor complex (GO:0030131),Molecular Function: protein binding (GO:0005515);InterPro=Clathrin adaptor%2C mu subunit%2C C-terminal (IPR008968),Longin-like (IPR011012);NIAS_FLcDNA=J023100J17,J013059C16,J023040F10;Oryzabase=23035;TENOR=Os05t0311000-01
Chr05	irgsp1_rep	five_prime_UTR	14191542	14191666	.	+	.	Parent=Os05t0311000-01
Chr05	irgsp1_rep	five_prime_UTR	14192021	14192082	.	+	.	Parent=Os05t0311000-01
Chr05	irgsp1_rep	CDS	14192083	14192085	.	+	0	Parent=Os05t0311000-01
Chr05	irgsp1_rep	CDS	14192213	14192252	.	+	0	Parent=Os05t0311000-01
Chr05	irgsp1_rep	CDS	14192630	14192853	.	+	2	Parent=Os05t0311000-01
Chr05	irgsp1_rep	CDS	14193827	14194069	.	+	0	Parent=Os05t0311000-01
Chr05	irgsp1_rep	CDS	14194347	14194512	.	+	0	Parent=Os05t0311000-01
Chr05	irgsp1_rep	CDS	14194762	14195066	.	+	2	Parent=Os05t0311000-01
Chr05	irgsp1_rep	CDS	14195478	14195664	.	+	0	Parent=Os05t0311000-01
Chr05	irgsp1_rep	CDS	14195766	14195919	.	+	2	Parent=Os05t0311000-01
Chr05	irgsp1_rep	CDS	14196641	14196703	.	+	1	Parent=Os05t0311000-01
Chr05	irgsp1_rep	CDS	14196792	14196888	.	+	1	Parent=Os05t0311000-01
Chr05	irgsp1_rep	CDS	14196985	14197074	.	+	0	Parent=Os05t0311000-01
Chr05	irgsp1_rep	three_prime_UTR	14197075	14197286	.	+	.	Parent=Os05t0311000-01
Chr05	irgsp1_rep	mRNA	14194345	14197286	.	+	.	ID=Os05t0311000-02;Name=Os05t0311000-02;Locus_id=Os05g0311000;CGSNL Gene Symbol=DELTA-COP2;CGSNL Gene Name=COATOMER SUBUNIT DELTA PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=Delta-COP2;Oryzabase Gene Name Synonym(s)=coatomer subunit delta protein 2;Note=Similar to delta-COP.;Transcript_evidence=AK104894 (DDBJ%2C Best hit);ORF_evidence=NP_001104961.1 (RefSeq);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: clathrin adaptor complex (GO:0030131),Molecular Function: protein binding (GO:0005515);InterPro=Clathrin adaptor%2C mu subunit%2C C-terminal (IPR008968);NIAS_FLcDNA=001-045-G01;Oryzabase=23035;Expression=AK104894;TENOR=Os05t0311000-02;KEGG=Os05t0311000-02
Chr05	irgsp1_rep	five_prime_UTR	14194345	14194346	.	+	.	Parent=Os05t0311000-02
Chr05	irgsp1_rep	CDS	14194347	14194512	.	+	0	Parent=Os05t0311000-02
Chr05	irgsp1_rep	CDS	14194762	14195066	.	+	2	Parent=Os05t0311000-02
Chr05	irgsp1_rep	CDS	14195478	14195664	.	+	0	Parent=Os05t0311000-02
Chr05	irgsp1_rep	CDS	14195766	14195919	.	+	2	Parent=Os05t0311000-02
Chr05	irgsp1_rep	CDS	14196641	14196703	.	+	1	Parent=Os05t0311000-02
Chr05	irgsp1_rep	CDS	14196792	14196888	.	+	1	Parent=Os05t0311000-02
Chr05	irgsp1_rep	CDS	14196985	14197074	.	+	0	Parent=Os05t0311000-02
Chr05	irgsp1_rep	three_prime_UTR	14197075	14197286	.	+	.	Parent=Os05t0311000-02
Chr05	irgsp1_rep	mRNA	14192628	14197095	.	-	.	ID=Os05t0311037-00;Name=Os05t0311037-00;Locus_id=Os05g0311037;Note=Hypothetical protein.;Transcript_evidence=tplb0060a06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0311037-00
Chr05	irgsp1_rep	five_prime_UTR	14196983	14197095	.	-	.	Parent=Os05t0311037-00
Chr05	irgsp1_rep	five_prime_UTR	14196768	14196886	.	-	.	Parent=Os05t0311037-00
Chr05	irgsp1_rep	five_prime_UTR	14195761	14195958	.	-	.	Parent=Os05t0311037-00
Chr05	irgsp1_rep	five_prime_UTR	14195487	14195659	.	-	.	Parent=Os05t0311037-00
Chr05	irgsp1_rep	five_prime_UTR	14194760	14195074	.	-	.	Parent=Os05t0311037-00
Chr05	irgsp1_rep	five_prime_UTR	14194481	14194506	.	-	.	Parent=Os05t0311037-00
Chr05	irgsp1_rep	CDS	14194363	14194480	.	-	0	Parent=Os05t0311037-00
Chr05	irgsp1_rep	CDS	14193825	14194082	.	-	2	Parent=Os05t0311037-00
Chr05	irgsp1_rep	CDS	14192846	14192850	.	-	2	Parent=Os05t0311037-00
Chr05	irgsp1_rep	three_prime_UTR	14192628	14192845	.	-	.	Parent=Os05t0311037-00
Chr05	irgsp1_rep	mRNA	14197842	14197900	.	-	.	ID=Os05t0311075-00;Name=Os05t0311075-00;Locus_id=Os05g0311075;Note=Non-protein coding transcript.;Transcript_evidence=EU943375 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0311075-00
Chr05	irgsp1_rep	exon	14197842	14197900	.	-	.	Parent=Os05t0311075-00
Chr05	irgsp1_rep	mRNA	14222757	14223086	.	+	.	ID=Os05t0311225-00;Name=Os05t0311225-00;Locus_id=Os05g0311225;Note=Non-protein coding transcript.;Transcript_evidence=AK369066 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0311225-00
Chr05	irgsp1_rep	exon	14222757	14223086	.	+	.	Parent=Os05t0311225-00
Chr05	irgsp1_rep	mRNA	14245044	14246369	.	+	.	ID=Os05t0311500-01;Name=Os05t0311500-01;Locus_id=Os05g0311500;Note=Protein of unknown function DUF567 family protein.;Transcript_evidence=AK058638 (DDBJ%2C Best hit);ORF_evidence=A2Y325 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237);InterPro=Tubby%2C C-terminal (IPR000007),Initiation factor 2B-related (IPR000649),Protein of unknown function DUF567 (IPR007612);NIAS_FLcDNA=001-018-D08;Expression=AK058638;TENOR=Os05t0311500-01;KEGG=Os05t0311500-01
Chr05	irgsp1_rep	five_prime_UTR	14245044	14245121	.	+	.	Parent=Os05t0311500-01
Chr05	irgsp1_rep	CDS	14245122	14245361	.	+	0	Parent=Os05t0311500-01
Chr05	irgsp1_rep	CDS	14245466	14245873	.	+	0	Parent=Os05t0311500-01
Chr05	irgsp1_rep	three_prime_UTR	14245874	14246369	.	+	.	Parent=Os05t0311500-01
Chr05	irgsp1_rep	mRNA	14245196	14245861	.	-	.	ID=Os05t0311550-00;Name=Os05t0311550-00;Locus_id=Os05g0311550;Note=Hypothetical protein.;Transcript_evidence=EU943048 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0311550-00
Chr05	irgsp1_rep	CDS	14245484	14245861	.	-	0	Parent=Os05t0311550-00
Chr05	irgsp1_rep	CDS	14245196	14245340	.	-	0	Parent=Os05t0311550-00
Chr05	irgsp1_rep	mRNA	14251996	14255507	.	+	.	ID=Os05t0311600-01;Name=Os05t0311600-01;Locus_id=Os05g0311600;Note=Similar to Transposase.;Transcript_evidence=AK100803 (DDBJ%2C Best hit);ORF_evidence=Q9ZWT4 (UniProt);NIAS_FLcDNA=J023121K17;Expression=AK100803;TENOR=Os05t0311600-01;KEGG=Os05t0311600-01
Chr05	irgsp1_rep	five_prime_UTR	14251996	14252594	.	+	.	Parent=Os05t0311600-01
Chr05	irgsp1_rep	five_prime_UTR	14252727	14252939	.	+	.	Parent=Os05t0311600-01
Chr05	irgsp1_rep	CDS	14252940	14252950	.	+	0	Parent=Os05t0311600-01
Chr05	irgsp1_rep	CDS	14254943	14255291	.	+	1	Parent=Os05t0311600-01
Chr05	irgsp1_rep	three_prime_UTR	14255292	14255507	.	+	.	Parent=Os05t0311600-01
Chr05	irgsp1_rep	mRNA	14251998	14260914	.	+	.	ID=Os05t0311600-02;Name=Os05t0311600-02;Locus_id=Os05g0311600;Note=Conserved hypothetical protein.;Transcript_evidence=AK069819 (DDBJ%2C Best hit);ORF_evidence=Q850S1 (UniProt);NIAS_FLcDNA=J023026N18;TENOR=Os05t0311600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	14251998	14252594	.	+	.	Parent=Os05t0311600-02
Chr05	irgsp1_rep	five_prime_UTR	14252727	14252950	.	+	.	Parent=Os05t0311600-02
Chr05	irgsp1_rep	five_prime_UTR	14259640	14259722	.	+	.	Parent=Os05t0311600-02
Chr05	irgsp1_rep	five_prime_UTR	14260134	14260234	.	+	.	Parent=Os05t0311600-02
Chr05	irgsp1_rep	CDS	14260235	14260558	.	+	0	Parent=Os05t0311600-02
Chr05	irgsp1_rep	three_prime_UTR	14260559	14260914	.	+	.	Parent=Os05t0311600-02
Chr05	irgsp1_rep	mRNA	14261484	14262509	.	-	.	ID=Os05t0311801-00;Name=Os05t0311801-00;Locus_id=Os05g0311801;CGSNL Gene Symbol=IPT3;CGSNL Gene Name=ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 3;Oryzabase Gene Symbol Synonym(s)=OsIPT3;Oryzabase Gene Name Synonym(s)=adenosine phosphate isopentenyltransferase 3%2C isopentenyltransferase 3;Note=Similar to Isopentenyl transferase IPT7.;Transcript_evidence=AB239799 (DDBJ%2C Best hit);ORF_evidence=B2XWS8 (UniProt);GO=Biological Process: tRNA processing (GO:0008033),Molecular Function: ATP binding (GO:0005524);InterPro=tRNA isopentenyltransferase (IPR002627),tRNA delta(2)-isopentenylpyrophosphate transferase (IPR018022);Oryzabase=6173;TENOR=Os05t0311801-00;KEGG=Os05t0311801-00
Chr05	irgsp1_rep	CDS	14261484	14262509	.	-	0	Parent=Os05t0311801-00
Chr05	irgsp1_rep	mRNA	14294833	14308824	.	-	.	ID=Os05t0312000-01;Name=Os05t0312000-01;Locus_id=Os05g0312000;RAP-DB Gene Symbol Synonym(s)=SPL40;RAP-DB Gene Name Synonym(s)=spotted-leaf 40;CGSNL Gene Symbol=SPL40;CGSNL Gene Name=SPOTTED-LEAF 40;Oryzabase Gene Symbol Synonym(s)=OsMed5_1%2C Med5_1;Oryzabase Gene Name Synonym(s)=Mediator 5_1%2C spotted-leaf 40;Note=Bacterial blight resistance;Transcript_evidence=AK243464;ORF_evidence=A0A0N7KKI3;NIAS_FLcDNA=J100071F15;Manual Curation=September 2%2C 2019;Literature_PMID=31446514;Oryzabase=20992;TENOR=Os05t0312000-01;KEGG=Os05t0312000-01
Chr05	irgsp1_rep	five_prime_UTR	14308696	14308824	.	-	.	Parent=Os05t0312000-01
Chr05	irgsp1_rep	CDS	14308397	14308695	.	-	0	Parent=Os05t0312000-01
Chr05	irgsp1_rep	CDS	14308169	14308279	.	-	1	Parent=Os05t0312000-01
Chr05	irgsp1_rep	CDS	14303387	14303740	.	-	1	Parent=Os05t0312000-01
Chr05	irgsp1_rep	CDS	14302005	14302315	.	-	1	Parent=Os05t0312000-01
Chr05	irgsp1_rep	CDS	14301835	14301926	.	-	2	Parent=Os05t0312000-01
Chr05	irgsp1_rep	CDS	14301420	14301741	.	-	0	Parent=Os05t0312000-01
Chr05	irgsp1_rep	CDS	14301127	14301322	.	-	2	Parent=Os05t0312000-01
Chr05	irgsp1_rep	CDS	14300904	14301018	.	-	1	Parent=Os05t0312000-01
Chr05	irgsp1_rep	CDS	14300584	14300742	.	-	0	Parent=Os05t0312000-01
Chr05	irgsp1_rep	CDS	14299803	14300466	.	-	0	Parent=Os05t0312000-01
Chr05	irgsp1_rep	CDS	14297703	14297912	.	-	2	Parent=Os05t0312000-01
Chr05	irgsp1_rep	CDS	14295267	14296357	.	-	2	Parent=Os05t0312000-01
Chr05	irgsp1_rep	three_prime_UTR	14294833	14295266	.	-	.	Parent=Os05t0312000-01
Chr05	irgsp1_rep	mRNA	14350756	14355079	.	+	.	ID=Os05t0312201-01;Name=Os05t0312201-01;Locus_id=Os05g0312201;Note=Hypothetical gene.;Transcript_evidence=AK289121 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090097J21;TENOR=Os05t0312201-01;KEGG=Os05t0312201-01
Chr05	irgsp1_rep	five_prime_UTR	14350756	14351980	.	+	.	Parent=Os05t0312201-01
Chr05	irgsp1_rep	CDS	14351981	14352319	.	+	0	Parent=Os05t0312201-01
Chr05	irgsp1_rep	three_prime_UTR	14352320	14355079	.	+	.	Parent=Os05t0312201-01
Chr05	irgsp1_rep	mRNA	14356082	14359461	.	-	.	ID=Os05t0312500-01;Name=Os05t0312500-01;Locus_id=Os05g0312500;Note=Reticulon family protein.;Transcript_evidence=AK069307 (DDBJ%2C Best hit);ORF_evidence=NP_001150935.1 (RefSeq);GO=Cellular Component: endoplasmic reticulum (GO:0005783);InterPro=Reticulon (IPR003388);NIAS_FLcDNA=J023010J24;Expression=AK069307;TENOR=Os05t0312500-01;KEGG=Os05t0312500-01
Chr05	irgsp1_rep	five_prime_UTR	14359333	14359461	.	-	.	Parent=Os05t0312500-01
Chr05	irgsp1_rep	five_prime_UTR	14359114	14359123	.	-	.	Parent=Os05t0312500-01
Chr05	irgsp1_rep	CDS	14358915	14359113	.	-	0	Parent=Os05t0312500-01
Chr05	irgsp1_rep	CDS	14358313	14358493	.	-	2	Parent=Os05t0312500-01
Chr05	irgsp1_rep	CDS	14357626	14357767	.	-	1	Parent=Os05t0312500-01
Chr05	irgsp1_rep	CDS	14357473	14357542	.	-	0	Parent=Os05t0312500-01
Chr05	irgsp1_rep	CDS	14356467	14356630	.	-	2	Parent=Os05t0312500-01
Chr05	irgsp1_rep	three_prime_UTR	14356082	14356466	.	-	.	Parent=Os05t0312500-01
Chr05	irgsp1_rep	mRNA	14360753	14361588	.	-	.	ID=Os05t0312600-01;Name=Os05t0312600-01;Locus_id=Os05g0312600;CGSNL Gene Symbol=CML21;CGSNL Gene Name=CALMODULIN-LIKE PROTEIN 21;Oryzabase Gene Symbol Synonym(s)=OsCML21;Oryzabase Gene Name Synonym(s)=calmodulin-like protein 21;Note=EF-Hand type domain containing protein.;Transcript_evidence=AK243353 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J100061B04;Oryzabase=10506;TENOR=Os05t0312600-01;KEGG=Os05t0312600-01
Chr05	irgsp1_rep	five_prime_UTR	14361496	14361588	.	-	.	Parent=Os05t0312600-01
Chr05	irgsp1_rep	CDS	14360902	14361495	.	-	0	Parent=Os05t0312600-01
Chr05	irgsp1_rep	three_prime_UTR	14360753	14360901	.	-	.	Parent=Os05t0312600-01
Chr05	irgsp1_rep	mRNA	14383928	14386267	.	+	.	ID=Os05t0313100-00;Name=Os05t0313100-00;Locus_id=Os05g0313100;Note=Photosystem II PsbQ%2C oxygen evolving complex domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8H819 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: oxygen evolving complex (GO:0009654),Cellular Component: extrinsic to membrane (GO:0019898),Molecular Function: calcium ion binding (GO:0005509);InterPro=Photosystem II PsbQ%2C oxygen evolving complex (IPR008797);TENOR=Os05t0313100-00
Chr05	irgsp1_rep	CDS	14383928	14384001	.	+	0	Parent=Os05t0313100-00
Chr05	irgsp1_rep	CDS	14386027	14386267	.	+	1	Parent=Os05t0313100-00
Chr05	irgsp1_rep	mRNA	14408019	14413939	.	+	.	ID=Os05t0313500-01;Name=Os05t0313500-01;Locus_id=Os05g0313500;Note=Similar to oxidoreductase/ zinc ion binding protein.;Transcript_evidence=AK243578 (DDBJ%2C Best hit);ORF_evidence=NP_001150541.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),Quinone oxidoreductase/zeta-crystallin%2C conserved site (IPR002364),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040),Polyketide synthase%2C enoylreductase (IPR020843);NIAS_FLcDNA=J100082K02;TENOR=Os05t0313500-01;KEGG=Os05t0313500-01 (EC:1.6.5.5)
Chr05	irgsp1_rep	five_prime_UTR	14408019	14408020	.	+	.	Parent=Os05t0313500-01
Chr05	irgsp1_rep	CDS	14408021	14408334	.	+	0	Parent=Os05t0313500-01
Chr05	irgsp1_rep	CDS	14409361	14409469	.	+	1	Parent=Os05t0313500-01
Chr05	irgsp1_rep	CDS	14411659	14411750	.	+	0	Parent=Os05t0313500-01
Chr05	irgsp1_rep	CDS	14411849	14412107	.	+	1	Parent=Os05t0313500-01
Chr05	irgsp1_rep	CDS	14412703	14412846	.	+	0	Parent=Os05t0313500-01
Chr05	irgsp1_rep	CDS	14413520	14413609	.	+	0	Parent=Os05t0313500-01
Chr05	irgsp1_rep	three_prime_UTR	14413610	14413939	.	+	.	Parent=Os05t0313500-01
Chr05	irgsp1_rep	mRNA	14414408	14416438	.	+	.	ID=Os05t0313600-00;Name=Os05t0313600-00;Locus_id=Os05g0313600;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK376552 (DDBJ);ORF_evidence=NP_001174340.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os05t0313600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	14414408	14415321	.	+	0	Parent=Os05t0313600-00
Chr05	irgsp1_rep	CDS	14415419	14416367	.	+	1	Parent=Os05t0313600-00
Chr05	irgsp1_rep	three_prime_UTR	14416368	14416438	.	+	.	Parent=Os05t0313600-00
Chr05	irgsp1_rep	mRNA	14417745	14419798	.	-	.	ID=Os05t0313700-01;Name=Os05t0313700-01;Locus_id=Os05g0313700;Note=Conserved hypothetical protein.;Transcript_evidence=AK107553 (DDBJ%2C Best hit);ORF_evidence=A2Y336 (UniProt);NIAS_FLcDNA=002-130-A12;Expression=AK107553;TENOR=Os05t0313700-01;KEGG=Os05t0313700-01
Chr05	irgsp1_rep	five_prime_UTR	14419792	14419798	.	-	.	Parent=Os05t0313700-01
Chr05	irgsp1_rep	CDS	14417968	14419791	.	-	0	Parent=Os05t0313700-01
Chr05	irgsp1_rep	three_prime_UTR	14417745	14417967	.	-	.	Parent=Os05t0313700-01
Chr05	irgsp1_rep	mRNA	14427905	14428933	.	-	.	ID=Os05t0313900-00;Name=Os05t0313900-00;Locus_id=Os05g0313900;Note=Similar to DNA cytosine methyltransferase Zmet3.;Transcript_evidence=AK375527 (DDBJ);ORF_evidence=B6UD67 (UniProt);TENOR=Os05t0313900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	14428813	14428933	.	-	.	Parent=Os05t0313900-00
Chr05	irgsp1_rep	five_prime_UTR	14428655	14428741	.	-	.	Parent=Os05t0313900-00
Chr05	irgsp1_rep	five_prime_UTR	14428372	14428565	.	-	.	Parent=Os05t0313900-00
Chr05	irgsp1_rep	CDS	14428030	14428371	.	-	0	Parent=Os05t0313900-00
Chr05	irgsp1_rep	three_prime_UTR	14427905	14428029	.	-	.	Parent=Os05t0313900-00
Chr05	irgsp1_rep	mRNA	14449684	14452183	.	-	.	ID=Os05t0314100-02;Name=Os05t0314100-02;Locus_id=Os05g0314100;Oryzabase Gene Name Synonym(s)=Sm gene%2C Sm family protein;Note=Similar to Small nuclear ribonucleoprotein-like protein.;Transcript_evidence=AK121220 (DDBJ%2C Best hit),AK241054 (DDBJ%2C Best hit);ORF_evidence=B3TLL8 (UniProt);NIAS_FLcDNA=J023090H02,J065062N18;Oryzabase=15647;Expression=AK121220;TENOR=Os05t0314100-02;KEGG=Os05t0314100-02
Chr05	irgsp1_rep	five_prime_UTR	14452066	14452183	.	-	.	Parent=Os05t0314100-02
Chr05	irgsp1_rep	CDS	14452048	14452065	.	-	0	Parent=Os05t0314100-02
Chr05	irgsp1_rep	CDS	14451861	14451938	.	-	0	Parent=Os05t0314100-02
Chr05	irgsp1_rep	CDS	14450144	14450248	.	-	0	Parent=Os05t0314100-02
Chr05	irgsp1_rep	CDS	14449941	14450057	.	-	0	Parent=Os05t0314100-02
Chr05	irgsp1_rep	three_prime_UTR	14449684	14449940	.	-	.	Parent=Os05t0314100-02
Chr05	irgsp1_rep	mRNA	14449726	14450171	.	-	.	ID=Os05t0314100-03;Name=Os05t0314100-03;Locus_id=Os05g0314100;Oryzabase Gene Name Synonym(s)=Sm gene%2C Sm family protein;Note=Similar to small nuclear ribonucleoprotein Sm D2.;Transcript_evidence=AK105062 (DDBJ%2C Best hit);ORF_evidence=B3TLL8 (UniProt);InterPro=Like-Sm ribonucleoprotein (LSM)-related domain (IPR010920);NIAS_FLcDNA=001-044-B09;Oryzabase=15647;Expression=AK105062;TENOR=Os05t0314100-03;KEGG=Os05t0314100-03
Chr05	irgsp1_rep	five_prime_UTR	14450171	14450171	.	-	.	Parent=Os05t0314100-03
Chr05	irgsp1_rep	CDS	14450144	14450170	.	-	0	Parent=Os05t0314100-03
Chr05	irgsp1_rep	CDS	14449941	14450057	.	-	0	Parent=Os05t0314100-03
Chr05	irgsp1_rep	three_prime_UTR	14449726	14449940	.	-	.	Parent=Os05t0314100-03
Chr05	irgsp1_rep	mRNA	14489395	14490822	.	-	.	ID=Os05t0314700-01;Name=Os05t0314700-01;Locus_id=Os05g0314700;Note=Conserved hypothetical protein.;Transcript_evidence=AK111406 (DDBJ%2C Best hit);ORF_evidence=B8AWP0 (UniProt);NIAS_FLcDNA=002-182-E08;Expression=AK111406;TENOR=Os05t0314700-01;KEGG=Os05t0314700-01
Chr05	irgsp1_rep	five_prime_UTR	14489989	14490822	.	-	.	Parent=Os05t0314700-01
Chr05	irgsp1_rep	CDS	14489656	14489988	.	-	0	Parent=Os05t0314700-01
Chr05	irgsp1_rep	three_prime_UTR	14489395	14489655	.	-	.	Parent=Os05t0314700-01
Chr05	irgsp1_rep	mRNA	14500324	14506831	.	-	.	ID=Os05t0315100-00;Name=Os05t0315100-00;Locus_id=Os05g0315100;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK362209 (DDBJ);ORF_evidence=F2DA63 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);TENOR=Os05t0315100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	14506827	14506831	.	-	.	Parent=Os05t0315100-00
Chr05	irgsp1_rep	CDS	14506228	14506826	.	-	0	Parent=Os05t0315100-00
Chr05	irgsp1_rep	CDS	14505735	14505926	.	-	1	Parent=Os05t0315100-00
Chr05	irgsp1_rep	CDS	14505550	14505631	.	-	1	Parent=Os05t0315100-00
Chr05	irgsp1_rep	CDS	14505249	14505440	.	-	0	Parent=Os05t0315100-00
Chr05	irgsp1_rep	CDS	14504991	14505104	.	-	0	Parent=Os05t0315100-00
Chr05	irgsp1_rep	CDS	14504009	14504119	.	-	0	Parent=Os05t0315100-00
Chr05	irgsp1_rep	CDS	14503912	14503941	.	-	0	Parent=Os05t0315100-00
Chr05	irgsp1_rep	three_prime_UTR	14503794	14503911	.	-	.	Parent=Os05t0315100-00
Chr05	irgsp1_rep	three_prime_UTR	14501790	14502209	.	-	.	Parent=Os05t0315100-00
Chr05	irgsp1_rep	three_prime_UTR	14500859	14501197	.	-	.	Parent=Os05t0315100-00
Chr05	irgsp1_rep	three_prime_UTR	14500324	14500787	.	-	.	Parent=Os05t0315100-00
Chr05	irgsp1_rep	mRNA	14510348	14514230	.	+	.	ID=Os05t0315200-01;Name=Os05t0315200-01;Locus_id=Os05g0315200;Note=Conserved hypothetical protein.;Transcript_evidence=AK071944 (DDBJ%2C Best hit),AK105270 (DDBJ%2C Best hit);ORF_evidence=A2Y343 (UniProt);NIAS_FLcDNA=J013087B05,001-115-F07;TENOR=Os05t0315200-01
Chr05	irgsp1_rep	five_prime_UTR	14510348	14510380	.	+	.	Parent=Os05t0315200-01
Chr05	irgsp1_rep	CDS	14510381	14510638	.	+	0	Parent=Os05t0315200-01
Chr05	irgsp1_rep	CDS	14510989	14511165	.	+	0	Parent=Os05t0315200-01
Chr05	irgsp1_rep	CDS	14511464	14511589	.	+	0	Parent=Os05t0315200-01
Chr05	irgsp1_rep	CDS	14511954	14512133	.	+	0	Parent=Os05t0315200-01
Chr05	irgsp1_rep	CDS	14512470	14512634	.	+	0	Parent=Os05t0315200-01
Chr05	irgsp1_rep	CDS	14513640	14513993	.	+	0	Parent=Os05t0315200-01
Chr05	irgsp1_rep	three_prime_UTR	14513994	14514230	.	+	.	Parent=Os05t0315200-01
Chr05	irgsp1_rep	mRNA	14572881	14574360	.	+	.	ID=Os05t0315700-00;Name=Os05t0315700-00;Locus_id=Os05g0315700;Note=Transferase domain containing protein.;Transcript_evidence=AK361237 (DDBJ);ORF_evidence=Q5WMS2 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os05t0315700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	14572881	14572926	.	+	.	Parent=Os05t0315700-00
Chr05	irgsp1_rep	CDS	14572927	14574360	.	+	0	Parent=Os05t0315700-00
Chr05	irgsp1_rep	mRNA	14588418	14593699	.	-	.	ID=Os05t0316000-01;Name=Os05t0316000-01;Locus_id=Os05g0316000;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK120330 (DDBJ%2C Best hit);ORF_evidence=B6TLQ8 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J013058L21;Expression=AK120330;TENOR=Os05t0316000-01;KEGG=Os05t0316000-01
Chr05	irgsp1_rep	five_prime_UTR	14593633	14593699	.	-	.	Parent=Os05t0316000-01
Chr05	irgsp1_rep	CDS	14593029	14593632	.	-	0	Parent=Os05t0316000-01
Chr05	irgsp1_rep	CDS	14591917	14591993	.	-	2	Parent=Os05t0316000-01
Chr05	irgsp1_rep	CDS	14591311	14591479	.	-	0	Parent=Os05t0316000-01
Chr05	irgsp1_rep	CDS	14590598	14590686	.	-	2	Parent=Os05t0316000-01
Chr05	irgsp1_rep	CDS	14589576	14589740	.	-	0	Parent=Os05t0316000-01
Chr05	irgsp1_rep	CDS	14589380	14589457	.	-	0	Parent=Os05t0316000-01
Chr05	irgsp1_rep	CDS	14589002	14589105	.	-	0	Parent=Os05t0316000-01
Chr05	irgsp1_rep	CDS	14588495	14588600	.	-	1	Parent=Os05t0316000-01
Chr05	irgsp1_rep	three_prime_UTR	14588418	14588494	.	-	.	Parent=Os05t0316000-01
Chr05	irgsp1_rep	mRNA	14588487	14593652	.	+	.	ID=Os05t0316050-00;Name=Os05t0316050-00;Locus_id=Os05g0316050;Note=Hypothetical protein.;Transcript_evidence=tplb0030g10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0316050-00
Chr05	irgsp1_rep	five_prime_UTR	14588487	14588586	.	+	.	Parent=Os05t0316050-00
Chr05	irgsp1_rep	five_prime_UTR	14588990	14589131	.	+	.	Parent=Os05t0316050-00
Chr05	irgsp1_rep	five_prime_UTR	14589532	14589726	.	+	.	Parent=Os05t0316050-00
Chr05	irgsp1_rep	five_prime_UTR	14590585	14590682	.	+	.	Parent=Os05t0316050-00
Chr05	irgsp1_rep	five_prime_UTR	14591308	14591478	.	+	.	Parent=Os05t0316050-00
Chr05	irgsp1_rep	five_prime_UTR	14591916	14591980	.	+	.	Parent=Os05t0316050-00
Chr05	irgsp1_rep	five_prime_UTR	14593015	14593035	.	+	.	Parent=Os05t0316050-00
Chr05	irgsp1_rep	CDS	14593036	14593246	.	+	0	Parent=Os05t0316050-00
Chr05	irgsp1_rep	CDS	14593412	14593652	.	+	2	Parent=Os05t0316050-00
Chr05	irgsp1_rep	mRNA	14598051	14606210	.	-	.	ID=Os05t0316100-01;Name=Os05t0316100-01;Locus_id=Os05g0316100;Note=Zinc/iron permease family protein.;Transcript_evidence=AK099474 (DDBJ%2C Best hit);ORF_evidence=XP_002326428.1 (RefSeq);GO=Biological Process: metal ion transport (GO:0030001),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: metal ion transmembrane transporter activity (GO:0046873);InterPro=Zinc/iron permease (IPR003689);NIAS_FLcDNA=J013024K20;Expression=AK099474;TENOR=Os05t0316100-01;KEGG=Os05t0316100-01
Chr05	irgsp1_rep	five_prime_UTR	14604897	14606210	.	-	.	Parent=Os05t0316100-01
Chr05	irgsp1_rep	CDS	14604489	14604896	.	-	0	Parent=Os05t0316100-01
Chr05	irgsp1_rep	CDS	14603623	14603907	.	-	0	Parent=Os05t0316100-01
Chr05	irgsp1_rep	CDS	14599310	14599438	.	-	0	Parent=Os05t0316100-01
Chr05	irgsp1_rep	CDS	14599112	14599209	.	-	0	Parent=Os05t0316100-01
Chr05	irgsp1_rep	CDS	14598214	14599027	.	-	1	Parent=Os05t0316100-01
Chr05	irgsp1_rep	three_prime_UTR	14598051	14598213	.	-	.	Parent=Os05t0316100-01
Chr05	irgsp1_rep	mRNA	14597978	14605556	.	-	.	ID=Os05t0316100-02;Name=Os05t0316100-02;Locus_id=Os05g0316100;Note=Zinc/iron permease family protein.;Transcript_evidence=AK066887 (DDBJ%2C Best hit);ORF_evidence=XP_002326428.1 (RefSeq);GO=Biological Process: metal ion transport (GO:0030001),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: metal ion transmembrane transporter activity (GO:0046873);InterPro=Zinc/iron permease (IPR003689);NIAS_FLcDNA=J013088L23;Expression=AK066887;TENOR=Os05t0316100-02;KEGG=Os05t0316100-02
Chr05	irgsp1_rep	five_prime_UTR	14605346	14605556	.	-	.	Parent=Os05t0316100-02
Chr05	irgsp1_rep	five_prime_UTR	14604897	14605062	.	-	.	Parent=Os05t0316100-02
Chr05	irgsp1_rep	CDS	14604489	14604896	.	-	0	Parent=Os05t0316100-02
Chr05	irgsp1_rep	CDS	14603623	14603907	.	-	0	Parent=Os05t0316100-02
Chr05	irgsp1_rep	CDS	14599310	14599438	.	-	0	Parent=Os05t0316100-02
Chr05	irgsp1_rep	CDS	14599112	14599209	.	-	0	Parent=Os05t0316100-02
Chr05	irgsp1_rep	CDS	14598214	14599027	.	-	1	Parent=Os05t0316100-02
Chr05	irgsp1_rep	three_prime_UTR	14597978	14598213	.	-	.	Parent=Os05t0316100-02
Chr05	irgsp1_rep	mRNA	14598149	14604903	.	+	.	ID=Os05t0316133-00;Name=Os05t0316133-00;Locus_id=Os05g0316133;Note=Hypothetical protein.;Transcript_evidence=tplb0046a14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0316133-00
Chr05	irgsp1_rep	five_prime_UTR	14598149	14599015	.	+	.	Parent=Os05t0316133-00
Chr05	irgsp1_rep	five_prime_UTR	14599103	14599208	.	+	.	Parent=Os05t0316133-00
Chr05	irgsp1_rep	five_prime_UTR	14599309	14599440	.	+	.	Parent=Os05t0316133-00
Chr05	irgsp1_rep	five_prime_UTR	14603618	14603814	.	+	.	Parent=Os05t0316133-00
Chr05	irgsp1_rep	CDS	14603815	14603909	.	+	0	Parent=Os05t0316133-00
Chr05	irgsp1_rep	CDS	14604486	14604903	.	+	1	Parent=Os05t0316133-00
Chr05	irgsp1_rep	mRNA	14601209	14601585	.	+	.	ID=Os05t0316166-00;Name=Os05t0316166-00;Locus_id=Os05g0316166;Note=Non-protein coding transcript.;Transcript_evidence=AK059379 (DDBJ%2C Secondary hit);ORF_evidence=NONE;TENOR=Os05t0316166-00
Chr05	irgsp1_rep	exon	14601209	14601585	.	+	.	Parent=Os05t0316166-00
Chr05	irgsp1_rep	mRNA	14614333	14619933	.	+	.	ID=Os05t0316200-01;Name=Os05t0316200-01;Locus_id=Os05g0316200;Note=Similar to mRNA%2C clone: RTFL01-30-M01.;Transcript_evidence=AK101705 (DDBJ%2C Best hit);ORF_evidence=E4MY40 (UniProt);GO=Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C cysteine-rich domain (IPR001305);NIAS_FLcDNA=J033060I06;Expression=AK101705;TENOR=Os05t0316200-01;KEGG=Os05t0316200-01
Chr05	irgsp1_rep	five_prime_UTR	14614333	14614511	.	+	.	Parent=Os05t0316200-01
Chr05	irgsp1_rep	CDS	14614512	14614593	.	+	0	Parent=Os05t0316200-01
Chr05	irgsp1_rep	CDS	14614717	14614986	.	+	2	Parent=Os05t0316200-01
Chr05	irgsp1_rep	CDS	14615093	14615165	.	+	2	Parent=Os05t0316200-01
Chr05	irgsp1_rep	CDS	14616883	14617214	.	+	1	Parent=Os05t0316200-01
Chr05	irgsp1_rep	CDS	14617978	14618119	.	+	2	Parent=Os05t0316200-01
Chr05	irgsp1_rep	CDS	14618540	14618665	.	+	1	Parent=Os05t0316200-01
Chr05	irgsp1_rep	CDS	14619299	14619680	.	+	1	Parent=Os05t0316200-01
Chr05	irgsp1_rep	three_prime_UTR	14619681	14619933	.	+	.	Parent=Os05t0316200-01
Chr05	irgsp1_rep	mRNA	14614490	14619824	.	+	.	ID=Os05t0316200-02;Name=Os05t0316200-02;Locus_id=Os05g0316200;Note=Similar to mRNA%2C clone: RTFL01-30-M01.;Transcript_evidence=AK060608 (DDBJ%2C Best hit);ORF_evidence=E4MY40 (UniProt);GO=Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C cysteine-rich domain (IPR001305);NIAS_FLcDNA=001-025-D01;Expression=AK060608;TENOR=Os05t0316200-02;KEGG=Os05t0316200-02
Chr05	irgsp1_rep	five_prime_UTR	14614490	14614511	.	+	.	Parent=Os05t0316200-02
Chr05	irgsp1_rep	CDS	14614512	14614593	.	+	0	Parent=Os05t0316200-02
Chr05	irgsp1_rep	CDS	14614717	14614986	.	+	2	Parent=Os05t0316200-02
Chr05	irgsp1_rep	CDS	14615093	14615165	.	+	2	Parent=Os05t0316200-02
Chr05	irgsp1_rep	CDS	14616883	14617214	.	+	1	Parent=Os05t0316200-02
Chr05	irgsp1_rep	CDS	14617978	14618119	.	+	2	Parent=Os05t0316200-02
Chr05	irgsp1_rep	CDS	14618540	14618665	.	+	1	Parent=Os05t0316200-02
Chr05	irgsp1_rep	CDS	14619299	14619680	.	+	1	Parent=Os05t0316200-02
Chr05	irgsp1_rep	three_prime_UTR	14619681	14619824	.	+	.	Parent=Os05t0316200-02
Chr05	irgsp1_rep	mRNA	14614490	14615756	.	+	.	ID=Os05t0316200-03;Name=Os05t0316200-03;Locus_id=Os05g0316200;Note=Hypothetical conserved gene.;Transcript_evidence=AK111481 (DDBJ%2C Best hit);ORF_evidence=B8AWK5 (UniProt);NIAS_FLcDNA=002-188-B07;Expression=AK111481;TENOR=Os05t0316200-03;KEGG=Os05t0316200-03
Chr05	irgsp1_rep	five_prime_UTR	14614490	14614511	.	+	.	Parent=Os05t0316200-03
Chr05	irgsp1_rep	CDS	14614512	14614986	.	+	0	Parent=Os05t0316200-03
Chr05	irgsp1_rep	CDS	14615093	14615169	.	+	2	Parent=Os05t0316200-03
Chr05	irgsp1_rep	three_prime_UTR	14615170	14615756	.	+	.	Parent=Os05t0316200-03
Chr05	irgsp1_rep	mRNA	14620796	14622260	.	-	.	ID=Os05t0316400-01;Name=Os05t0316400-01;Locus_id=Os05g0316400;Note=Conserved hypothetical protein.;Transcript_evidence=AK108681 (DDBJ%2C Best hit);ORF_evidence=Q5W6X3 (UniProt);NIAS_FLcDNA=002-149-B06;TENOR=Os05t0316400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	14622149	14622260	.	-	.	Parent=Os05t0316400-01
Chr05	irgsp1_rep	CDS	14621564	14622148	.	-	0	Parent=Os05t0316400-01
Chr05	irgsp1_rep	three_prime_UTR	14620796	14621563	.	-	.	Parent=Os05t0316400-01
Chr05	irgsp1_rep	mRNA	14663179	14664384	.	+	.	ID=Os05t0316800-01;Name=Os05t0316800-01;Locus_id=Os05g0316800;CGSNL Gene Symbol=ERF56;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 56;Oryzabase Gene Symbol Synonym(s)=OsERF#056%2C OsERF056%2C OsERF56%2C AP2/EREBP#164%2C AP2/EREBP164;Oryzabase Gene Name Synonym(s)=ethylene response factor 56%2C APETALA2/ethylene-responsive element binding protein 164;Note=Similar to Ethylene-responsive transcription factor 9 (Ethylene-responsive element binding factor 9) (EREBP-9) (AtERF9).;Transcript_evidence=AK110613 (DDBJ%2C Best hit);ORF_evidence=B9FKG6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=002-168-H06;Oryzabase=10572;Expression=AK110613;TENOR=Os05t0316800-01;KEGG=Os05t0316800-01
Chr05	irgsp1_rep	five_prime_UTR	14663179	14663222	.	+	.	Parent=Os05t0316800-01
Chr05	irgsp1_rep	CDS	14663223	14664068	.	+	0	Parent=Os05t0316800-01
Chr05	irgsp1_rep	three_prime_UTR	14664069	14664384	.	+	.	Parent=Os05t0316800-01
Chr05	irgsp1_rep	mRNA	14688251	14701323	.	+	.	ID=Os05t0317200-01;Name=Os05t0317200-01;Locus_id=Os05g0317200;CGSNL Gene Symbol=LACS8;CGSNL Gene Name=LONG-CHAIN ACYL-COA SYNTHETASE 8;Oryzabase Gene Symbol Synonym(s)=OsLACS8;Oryzabase Gene Name Synonym(s)=long-chain acyl-CoA synthetase 8;Note=AMP-dependent synthetase and ligase domain containing protein.;Transcript_evidence=AK100521 (DDBJ%2C Best hit),AK070636 (DDBJ%2C Best hit);ORF_evidence=B6U6S2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873),AMP-binding%2C conserved site (IPR020845);NIAS_FLcDNA=J023100L19,J023056F23;Oryzabase=15288;TENOR=Os05t0317200-01
Chr05	irgsp1_rep	five_prime_UTR	14688251	14688447	.	+	.	Parent=Os05t0317200-01
Chr05	irgsp1_rep	five_prime_UTR	14689637	14689677	.	+	.	Parent=Os05t0317200-01
Chr05	irgsp1_rep	CDS	14689678	14690217	.	+	0	Parent=Os05t0317200-01
Chr05	irgsp1_rep	CDS	14690303	14690383	.	+	0	Parent=Os05t0317200-01
Chr05	irgsp1_rep	CDS	14692987	14693253	.	+	0	Parent=Os05t0317200-01
Chr05	irgsp1_rep	CDS	14694266	14694397	.	+	0	Parent=Os05t0317200-01
Chr05	irgsp1_rep	CDS	14694481	14694654	.	+	0	Parent=Os05t0317200-01
Chr05	irgsp1_rep	CDS	14696224	14696453	.	+	0	Parent=Os05t0317200-01
Chr05	irgsp1_rep	CDS	14697128	14697245	.	+	1	Parent=Os05t0317200-01
Chr05	irgsp1_rep	CDS	14699111	14699242	.	+	0	Parent=Os05t0317200-01
Chr05	irgsp1_rep	CDS	14699321	14699455	.	+	0	Parent=Os05t0317200-01
Chr05	irgsp1_rep	CDS	14699553	14699759	.	+	0	Parent=Os05t0317200-01
Chr05	irgsp1_rep	CDS	14700831	14700995	.	+	0	Parent=Os05t0317200-01
Chr05	irgsp1_rep	three_prime_UTR	14700996	14701323	.	+	.	Parent=Os05t0317200-01
Chr05	irgsp1_rep	mRNA	14702104	14705055	.	-	.	ID=Os05t0317300-01;Name=Os05t0317300-01;Locus_id=Os05g0317300;Note=Conserved hypothetical protein.;Transcript_evidence=AK064846 (DDBJ%2C Best hit),AK122018 (DDBJ%2C Best hit);ORF_evidence=B8AWK8 (UniProt);NIAS_FLcDNA=J013000G11,J033111M10;TENOR=Os05t0317300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	14704801	14705055	.	-	0	Parent=Os05t0317300-01
Chr05	irgsp1_rep	three_prime_UTR	14704794	14704800	.	-	.	Parent=Os05t0317300-01
Chr05	irgsp1_rep	three_prime_UTR	14702104	14704691	.	-	.	Parent=Os05t0317300-01
Chr05	irgsp1_rep	mRNA	14703650	14705297	.	+	.	ID=Os05t0317400-01;Name=Os05t0317400-01;Locus_id=Os05g0317400;Note=Hypothetical protein.;Transcript_evidence=AK120011 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-186-A11;Expression=AK120011;TENOR=Os05t0317400-01;KEGG=Os05t0317400-01
Chr05	irgsp1_rep	five_prime_UTR	14703650	14704182	.	+	.	Parent=Os05t0317400-01
Chr05	irgsp1_rep	CDS	14704183	14704407	.	+	0	Parent=Os05t0317400-01
Chr05	irgsp1_rep	three_prime_UTR	14704408	14705297	.	+	.	Parent=Os05t0317400-01
Chr05	irgsp1_rep	mRNA	14714454	14714552	.	-	.	ID=Os05t0317550-00;Name=Os05t0317550-00;Locus_id=Os05g0317550;Note=Non-protein coding transcript.;Transcript_evidence=EU949922 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0317550-00
Chr05	irgsp1_rep	exon	14714454	14714552	.	-	.	Parent=Os05t0317550-00
Chr05	irgsp1_rep	mRNA	14716606	14721633	.	+	.	ID=Os05t0317700-01;Name=Os05t0317700-01;Locus_id=Os05g0317700;Oryzabase Gene Symbol Synonym(s)=OsCrRLK1L12;Oryzabase Gene Name Synonym(s)=Catharanthus roseus receptor-like kinase1-like kinase 12;Note=Similar to Resistance protein candidate (Fragment).;Transcript_evidence=AK121364 (DDBJ%2C Best hit);ORF_evidence=A7U519 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Malectin-like carbohydrate-binding domain (IPR024788);NIAS_FLcDNA=J023125D04;Oryzabase=18680;Expression=AK121364;TENOR=Os05t0317700-01;KEGG=Os05t0317700-01
Chr05	irgsp1_rep	five_prime_UTR	14716606	14716818	.	+	.	Parent=Os05t0317700-01
Chr05	irgsp1_rep	five_prime_UTR	14718693	14718906	.	+	.	Parent=Os05t0317700-01
Chr05	irgsp1_rep	CDS	14718907	14721432	.	+	0	Parent=Os05t0317700-01
Chr05	irgsp1_rep	three_prime_UTR	14721433	14721633	.	+	.	Parent=Os05t0317700-01
Chr05	irgsp1_rep	mRNA	14725926	14735830	.	+	.	ID=Os05t0317900-01;Name=Os05t0317900-01;Locus_id=Os05g0317900;RAP-DB Gene Symbol Synonym(s)=OsCrRLK1L2;RAP-DB Gene Name Synonym(s)=Catharanthus roseus receptor-like kinase1-like kinase 2;CGSNL Gene Symbol=RLCK183;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 183;Oryzabase Gene Symbol Synonym(s)=OsRLCK183%2C OsCrRLK1L2;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 183%2C Catharanthus roseus receptor-like kinase1-like kinase 2;Note=Catharanthus roseus receptor-like kinase1-like kinase%2C Regulation of flowering time signaling pathway and/or circadian rhythms;Transcript_evidence=AK065965;ORF_evidence=Q5W6W0;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),Malectin-like carbohydrate-binding domain (IPR024788),Protein kinase domain (IPR000719),Serine-threonine/tyrosine-protein kinase%2C catalytic domain (IPR001245),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J013047H01;Manual Curation=October 2%2C 2017;Literature_PMID=25399351;Oryzabase=18884;Expression=AK065965;TENOR=Os05t0317900-01;KEGG=Os05t0317900-01
Chr05	irgsp1_rep	five_prime_UTR	14725926	14726038	.	+	.	Parent=Os05t0317900-01
Chr05	irgsp1_rep	five_prime_UTR	14732907	14733111	.	+	.	Parent=Os05t0317900-01
Chr05	irgsp1_rep	CDS	14733112	14735652	.	+	0	Parent=Os05t0317900-01
Chr05	irgsp1_rep	three_prime_UTR	14735653	14735830	.	+	.	Parent=Os05t0317900-01
Chr05	irgsp1_rep	mRNA	14749809	14753963	.	+	.	ID=Os05t0318100-00;Name=Os05t0318100-00;Locus_id=Os05g0318100;Note=Similar to Protein kinase-related protein.;Transcript_evidence=ab initio prediction;ORF_evidence=C6ZRT3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os05t0318100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	14749809	14750655	.	+	0	Parent=Os05t0318100-00
Chr05	irgsp1_rep	CDS	14750743	14750784	.	+	2	Parent=Os05t0318100-00
Chr05	irgsp1_rep	CDS	14752888	14753963	.	+	2	Parent=Os05t0318100-00
Chr05	irgsp1_rep	mRNA	14749811	14754024	.	-	.	ID=Os05t0318166-01;Name=Os05t0318166-01;Locus_id=Os05g0318166;Note=Hypothetical gene.;Transcript_evidence=AK241006 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065053G11;TENOR=Os05t0318166-01
Chr05	irgsp1_rep	five_prime_UTR	14752888	14754024	.	-	.	Parent=Os05t0318166-01
Chr05	irgsp1_rep	five_prime_UTR	14750769	14750784	.	-	.	Parent=Os05t0318166-01
Chr05	irgsp1_rep	CDS	14750743	14750768	.	-	0	Parent=Os05t0318166-01
Chr05	irgsp1_rep	CDS	14749811	14750655	.	-	1	Parent=Os05t0318166-01
Chr05	irgsp1_rep	mRNA	14770514	14773094	.	+	.	ID=Os05t0318300-01;Name=Os05t0318300-01;Locus_id=Os05g0318300;Note=Ribonuclease III domain containing protein.;Transcript_evidence=AK065362 (DDBJ%2C Best hit),AK105787 (DDBJ%2C Best hit);ORF_evidence=Q53KR7 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Molecular Function: RNA binding (GO:0003723),Molecular Function: ribonuclease III activity (GO:0004525);InterPro=Ribonuclease III (IPR000999);NIAS_FLcDNA=J013006O19,001-202-H01;TENOR=Os05t0318300-01
Chr05	irgsp1_rep	five_prime_UTR	14770514	14770521	.	+	.	Parent=Os05t0318300-01
Chr05	irgsp1_rep	CDS	14770522	14770729	.	+	0	Parent=Os05t0318300-01
Chr05	irgsp1_rep	CDS	14771018	14771142	.	+	2	Parent=Os05t0318300-01
Chr05	irgsp1_rep	CDS	14771353	14771442	.	+	0	Parent=Os05t0318300-01
Chr05	irgsp1_rep	CDS	14771722	14771774	.	+	0	Parent=Os05t0318300-01
Chr05	irgsp1_rep	CDS	14772071	14772173	.	+	1	Parent=Os05t0318300-01
Chr05	irgsp1_rep	CDS	14772316	14772431	.	+	0	Parent=Os05t0318300-01
Chr05	irgsp1_rep	CDS	14772512	14772560	.	+	1	Parent=Os05t0318300-01
Chr05	irgsp1_rep	three_prime_UTR	14772561	14773094	.	+	.	Parent=Os05t0318300-01
Chr05	irgsp1_rep	mRNA	14784692	14789077	.	-	.	ID=Os05t0318600-01;Name=Os05t0318600-01;Locus_id=Os05g0318600;Note=Similar to FERONIA receptor-like kinase.;Transcript_evidence=AK099713 (DDBJ%2C Best hit);ORF_evidence=A7U520 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Malectin-like carbohydrate-binding domain (IPR024788);NIAS_FLcDNA=J013084B13;TENOR=Os05t0318600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	14787444	14789077	.	-	.	Parent=Os05t0318600-01
Chr05	irgsp1_rep	CDS	14785749	14787443	.	-	0	Parent=Os05t0318600-01
Chr05	irgsp1_rep	three_prime_UTR	14784692	14785748	.	-	.	Parent=Os05t0318600-01
Chr05	irgsp1_rep	mRNA	14795522	14799642	.	-	.	ID=Os05t0318700-01;Name=Os05t0318700-01;Locus_id=Os05g0318700;RAP-DB Gene Symbol Synonym(s)=OsCrRLK1L3;RAP-DB Gene Name Synonym(s)=Catharanthus roseus receptor-like kinase1-like kinase 3;Oryzabase Gene Symbol Synonym(s)=OsCrRLK1L3;Oryzabase Gene Name Synonym(s)=Catharanthus roseus receptor-like kinase1-like kinase 3;Note=Catharanthus roseus receptor-like kinase1-like kinase;Transcript_evidence=AK120223 (truncated),Inferred from literature;ORF_evidence=A0A0P0WKX1;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),Malectin-like carbohydrate-binding domain (IPR024788),Protein kinase domain (IPR000719),Serine-threonine/tyrosine-protein kinase%2C catalytic domain (IPR001245),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J013041M06 (truncated);Manual Curation=October 2%2C 2017;Literature_PMID=25399351;Oryzabase=18673;Expression=AK120223;TENOR=Os05t0318700-01;KEGG=Os05t0318700-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	14799503	14799642	.	-	.	Parent=Os05t0318700-01
Chr05	irgsp1_rep	five_prime_UTR	14798479	14798673	.	-	.	Parent=Os05t0318700-01
Chr05	irgsp1_rep	CDS	14795833	14798478	.	-	0	Parent=Os05t0318700-01
Chr05	irgsp1_rep	three_prime_UTR	14795522	14795832	.	-	.	Parent=Os05t0318700-01
Chr05	irgsp1_rep	mRNA	14795539	14798481	.	-	.	ID=Os05t0318700-02;Name=Os05t0318700-02;Locus_id=Os05g0318700;Oryzabase Gene Symbol Synonym(s)=OsCrRLK1L3;Oryzabase Gene Name Synonym(s)=Catharanthus roseus receptor-like kinase1-like kinase 3;Note=Similar to Resistance protein candidate (Fragment).;Transcript_evidence=AK287484 (DDBJ%2C Best hit);ORF_evidence=A7U517 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635),Malectin-like carbohydrate-binding domain (IPR024788);NIAS_FLcDNA=J043026J21;Oryzabase=18673;TENOR=Os05t0318700-02;KEGG=Os05t0318700-02
Chr05	irgsp1_rep	five_prime_UTR	14798479	14798481	.	-	.	Parent=Os05t0318700-02
Chr05	irgsp1_rep	CDS	14795833	14798478	.	-	0	Parent=Os05t0318700-02
Chr05	irgsp1_rep	three_prime_UTR	14795539	14795832	.	-	.	Parent=Os05t0318700-02
Chr05	irgsp1_rep	mRNA	14801870	14809961	.	+	.	ID=Os05t0318901-00;Name=Os05t0318901-00;Locus_id=Os05g0318901;Note=Non-protein coding transcript.;Transcript_evidence=CT836479 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os05t0318901-00
Chr05	irgsp1_rep	exon	14801870	14801931	.	+	.	Parent=Os05t0318901-00
Chr05	irgsp1_rep	exon	14802053	14802159	.	+	.	Parent=Os05t0318901-00
Chr05	irgsp1_rep	exon	14809465	14809961	.	+	.	Parent=Os05t0318901-00
Chr05	irgsp1_rep	mRNA	14816350	14818668	.	+	.	ID=Os05t0319100-00;Name=Os05t0319100-00;Locus_id=Os05g0319100;Note=Putative mannan endo-1%2C4-beta-mannosidase 5.;Transcript_evidence=Q5W6G0 (UniProt);ORF_evidence=Q5W6G0 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 5 (IPR001547),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);TENOR=Os05t0319100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	14816350	14816820	.	+	0	Parent=Os05t0319100-00
Chr05	irgsp1_rep	CDS	14817582	14818111	.	+	0	Parent=Os05t0319100-00
Chr05	irgsp1_rep	CDS	14818194	14818668	.	+	1	Parent=Os05t0319100-00
Chr05	irgsp1_rep	mRNA	14821904	14824572	.	-	.	ID=Os05t0319200-00;Name=Os05t0319200-00;Locus_id=Os05g0319200;CGSNL Gene Symbol=ACS4;CGSNL Gene Name=ACC SYNTHASE 4;Oryzabase Gene Symbol Synonym(s)=OsACS4%2C OS-ACS4;Oryzabase Gene Name Synonym(s)=ACC synthase 4%2C 1-aminocyclopropane-1-carboxylic acid synthase 4;Note=Similar to 1-aminocyclopropane-1-carboxylic acid synthase.;Transcript_evidence=BT060895 (DDBJ);ORF_evidence=O24220 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Biological Process: 1-aminocyclopropane-1-carboxylate biosynthetic process (GO:0042218),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: 1-aminocyclopropane-1-carboxylate synthase activity (GO:0016847),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=1-aminocyclopropane-1-carboxylate synthase (IPR001176),Aminotransferases%2C class-I%2C pyridoxal-phosphate-binding site (IPR004838),Aminotransferase%2C class I/classII (IPR004839),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);Oryzabase=6851;TENOR=Os05t0319200-00;KEGG=Os05t0319200-00
Chr05	irgsp1_rep	five_prime_UTR	14824478	14824572	.	-	.	Parent=Os05t0319200-00
Chr05	irgsp1_rep	CDS	14824145	14824477	.	-	0	Parent=Os05t0319200-00
Chr05	irgsp1_rep	CDS	14823365	14823525	.	-	0	Parent=Os05t0319200-00
Chr05	irgsp1_rep	CDS	14821904	14822900	.	-	1	Parent=Os05t0319200-00
Chr05	irgsp1_rep	mRNA	14840519	14844047	.	+	.	ID=Os05t0319700-01;Name=Os05t0319700-01;Locus_id=Os05g0319700;Note=Similar to Protein kinase-like protein (Fragment).;Transcript_evidence=AK107192 (DDBJ%2C Best hit);ORF_evidence=NP_001148336.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=002-125-A05;Expression=AK107192;TENOR=Os05t0319700-01;KEGG=Os05t0319700-01
Chr05	irgsp1_rep	five_prime_UTR	14840519	14840728	.	+	.	Parent=Os05t0319700-01
Chr05	irgsp1_rep	CDS	14840729	14840993	.	+	0	Parent=Os05t0319700-01
Chr05	irgsp1_rep	CDS	14841525	14841680	.	+	2	Parent=Os05t0319700-01
Chr05	irgsp1_rep	CDS	14841774	14842021	.	+	2	Parent=Os05t0319700-01
Chr05	irgsp1_rep	CDS	14842269	14842401	.	+	0	Parent=Os05t0319700-01
Chr05	irgsp1_rep	CDS	14842551	14842614	.	+	2	Parent=Os05t0319700-01
Chr05	irgsp1_rep	CDS	14842739	14842835	.	+	1	Parent=Os05t0319700-01
Chr05	irgsp1_rep	CDS	14842960	14843062	.	+	0	Parent=Os05t0319700-01
Chr05	irgsp1_rep	CDS	14843175	14843293	.	+	2	Parent=Os05t0319700-01
Chr05	irgsp1_rep	CDS	14843518	14843607	.	+	0	Parent=Os05t0319700-01
Chr05	irgsp1_rep	CDS	14843695	14843856	.	+	0	Parent=Os05t0319700-01
Chr05	irgsp1_rep	three_prime_UTR	14843857	14844047	.	+	.	Parent=Os05t0319700-01
Chr05	irgsp1_rep	mRNA	14848337	14852841	.	-	.	ID=Os05t0319800-01;Name=Os05t0319800-01;Locus_id=Os05g0319800;CGSNL Gene Symbol=HA1;Oryzabase Gene Symbol Synonym(s)=OsHA1;Note=Similar to Plasma membrane H+ ATPase (EC 3.6.3.6).;Transcript_evidence=AK100483 (DDBJ%2C Best hit);ORF_evidence=Q8L6I0 (UniProt);GO=Biological Process: ATP catabolic process (GO:0006200),Biological Process: ATP biosynthetic process (GO:0006754),Biological Process: cation transport (GO:0006812),Biological Process: metabolic process (GO:0008152),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662),Molecular Function: ATPase activity (GO:0016887),Molecular Function: metal ion binding (GO:0046872);InterPro=ATPase%2C P-type%2C H+ transporting proton pump (IPR000695),ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),ATPase%2C P-type cation-transporter%2C N-terminal (IPR004014),Haloacid dehalogenase-like hydrolase (IPR005834),ATPase%2C P-type%2C plasma-membrane proton-efflux (IPR006534),ATPase%2C P-type%2C ATPase-associated domain (IPR008250),ATPase%2C P-type phosphorylation site (IPR018303),HAD-like domain (IPR023214),ATPase%2C P-type%2C  transmembrane domain (IPR023298),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C  P-type%2C cytoplasmic transduction domain A (IPR023300);NIAS_FLcDNA=J023097B04;Oryzabase=23719;Expression=AK100483;TENOR=Os05t0319800-01;KEGG=Os05t0319800-01 (EC:3.6.3.6)
Chr05	irgsp1_rep	five_prime_UTR	14852735	14852841	.	-	.	Parent=Os05t0319800-01
Chr05	irgsp1_rep	CDS	14852444	14852734	.	-	0	Parent=Os05t0319800-01
Chr05	irgsp1_rep	CDS	14852255	14852353	.	-	0	Parent=Os05t0319800-01
Chr05	irgsp1_rep	CDS	14852027	14852164	.	-	0	Parent=Os05t0319800-01
Chr05	irgsp1_rep	CDS	14851604	14851918	.	-	0	Parent=Os05t0319800-01
Chr05	irgsp1_rep	CDS	14851193	14851519	.	-	0	Parent=Os05t0319800-01
Chr05	irgsp1_rep	CDS	14850961	14851080	.	-	0	Parent=Os05t0319800-01
Chr05	irgsp1_rep	CDS	14850729	14850854	.	-	0	Parent=Os05t0319800-01
Chr05	irgsp1_rep	CDS	14850217	14850622	.	-	0	Parent=Os05t0319800-01
Chr05	irgsp1_rep	CDS	14849366	14850123	.	-	2	Parent=Os05t0319800-01
Chr05	irgsp1_rep	CDS	14849103	14849285	.	-	0	Parent=Os05t0319800-01
Chr05	irgsp1_rep	CDS	14848722	14849003	.	-	0	Parent=Os05t0319800-01
Chr05	irgsp1_rep	three_prime_UTR	14848337	14848721	.	-	.	Parent=Os05t0319800-01
Chr05	irgsp1_rep	mRNA	14848456	14850266	.	-	.	ID=Os05t0319800-02;Name=Os05t0319800-02;Locus_id=Os05g0319800;CGSNL Gene Symbol=HA1;Oryzabase Gene Symbol Synonym(s)=OsHA1;Note=Similar to Plasma membrane H+ ATPase.;Transcript_evidence=AK099106 (DDBJ%2C Best hit),AK069666 (DDBJ%2C Best hit);ORF_evidence=Q8L6I0 (UniProt);GO=Biological Process: ATP catabolic process (GO:0006200),Biological Process: ATP biosynthetic process (GO:0006754),Biological Process: cation transport (GO:0006812),Biological Process: metabolic process (GO:0008152),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662),Molecular Function: ATPase activity (GO:0016887);InterPro=ATPase%2C P-type%2C H+ transporting proton pump (IPR000695),ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),Haloacid dehalogenase-like hydrolase (IPR005834),ATPase%2C P-type%2C plasma-membrane proton-efflux (IPR006534),HAD-like domain (IPR023214),ATPase%2C P-type%2C  transmembrane domain (IPR023298);NIAS_FLcDNA=J023028O04,J023028O05;Oryzabase=23719;Expression=AK099106;TENOR=Os05t0319800-02;KEGG=Os05t0319800-02 (EC:3.6.3.6)
Chr05	irgsp1_rep	five_prime_UTR	14850266	14850266	.	-	.	Parent=Os05t0319800-02
Chr05	irgsp1_rep	CDS	14850217	14850265	.	-	0	Parent=Os05t0319800-02
Chr05	irgsp1_rep	CDS	14849609	14850123	.	-	2	Parent=Os05t0319800-02
Chr05	irgsp1_rep	CDS	14849366	14849539	.	-	0	Parent=Os05t0319800-02
Chr05	irgsp1_rep	CDS	14849103	14849285	.	-	0	Parent=Os05t0319800-02
Chr05	irgsp1_rep	CDS	14848722	14849003	.	-	0	Parent=Os05t0319800-02
Chr05	irgsp1_rep	three_prime_UTR	14848456	14848721	.	-	.	Parent=Os05t0319800-02
Chr05	irgsp1_rep	mRNA	14848718	14852564	.	+	.	ID=Os05t0319850-00;Name=Os05t0319850-00;Locus_id=Os05g0319850;Note=Hypothetical protein.;Transcript_evidence=tplb0039e05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0319850-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	14848718	14848976	.	+	.	Parent=Os05t0319850-00
Chr05	irgsp1_rep	five_prime_UTR	14849082	14849289	.	+	.	Parent=Os05t0319850-00
Chr05	irgsp1_rep	five_prime_UTR	14849369	14849521	.	+	.	Parent=Os05t0319850-00
Chr05	irgsp1_rep	five_prime_UTR	14849580	14849596	.	+	.	Parent=Os05t0319850-00
Chr05	irgsp1_rep	CDS	14849597	14850112	.	+	0	Parent=Os05t0319850-00
Chr05	irgsp1_rep	CDS	14850201	14850595	.	+	0	Parent=Os05t0319850-00
Chr05	irgsp1_rep	CDS	14850702	14850705	.	+	1	Parent=Os05t0319850-00
Chr05	irgsp1_rep	three_prime_UTR	14850706	14850856	.	+	.	Parent=Os05t0319850-00
Chr05	irgsp1_rep	three_prime_UTR	14850964	14851059	.	+	.	Parent=Os05t0319850-00
Chr05	irgsp1_rep	three_prime_UTR	14851169	14851498	.	+	.	Parent=Os05t0319850-00
Chr05	irgsp1_rep	three_prime_UTR	14851579	14851885	.	+	.	Parent=Os05t0319850-00
Chr05	irgsp1_rep	three_prime_UTR	14851986	14852162	.	+	.	Parent=Os05t0319850-00
Chr05	irgsp1_rep	three_prime_UTR	14852254	14852352	.	+	.	Parent=Os05t0319850-00
Chr05	irgsp1_rep	three_prime_UTR	14852443	14852564	.	+	.	Parent=Os05t0319850-00
Chr05	irgsp1_rep	mRNA	14854181	14856374	.	+	.	ID=Os05t0319875-00;Name=Os05t0319875-00;Locus_id=Os05g0319875;Note=Hypothetical protein.;Transcript_evidence=tplb0048l17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0319875-00
Chr05	irgsp1_rep	five_prime_UTR	14854181	14854545	.	+	.	Parent=Os05t0319875-00
Chr05	irgsp1_rep	CDS	14854546	14855559	.	+	0	Parent=Os05t0319875-00
Chr05	irgsp1_rep	CDS	14855666	14856169	.	+	0	Parent=Os05t0319875-00
Chr05	irgsp1_rep	three_prime_UTR	14856170	14856374	.	+	.	Parent=Os05t0319875-00
Chr05	irgsp1_rep	mRNA	14854444	14855118	.	-	.	ID=Os05t0319900-00;Name=Os05t0319900-00;Locus_id=Os05g0319900;Note=Similar to Endo-1%2C4-beta-xylanase.;Transcript_evidence=ab initio prediction;ORF_evidence=B6SW51 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 10 (IPR001000),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);TENOR=Os05t0319900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	14854444	14855118	.	-	0	Parent=Os05t0319900-00
Chr05	irgsp1_rep	mRNA	14866515	14869847	.	-	.	ID=Os05t0320100-01;Name=Os05t0320100-01;Locus_id=Os05g0320100;Oryzabase Gene Symbol Synonym(s)=OsFbox255%2C Os_F0067;Oryzabase Gene Name Synonym(s)=F-box protein 255;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK242930 (DDBJ%2C Best hit);ORF_evidence=NP_001055188.2 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J090086B10;Oryzabase=17039;TENOR=Os05t0320100-01;KEGG=Os05t0320100-01
Chr05	irgsp1_rep	five_prime_UTR	14869724	14869847	.	-	.	Parent=Os05t0320100-01
Chr05	irgsp1_rep	CDS	14868598	14869723	.	-	0	Parent=Os05t0320100-01
Chr05	irgsp1_rep	CDS	14866842	14866849	.	-	2	Parent=Os05t0320100-01
Chr05	irgsp1_rep	three_prime_UTR	14866515	14866841	.	-	.	Parent=Os05t0320100-01
Chr05	irgsp1_rep	mRNA	14879437	14881877	.	+	.	ID=Os05t0320300-01;Name=Os05t0320300-01;Locus_id=Os05g0320300;Note=Similar to Homeobox protein.;Transcript_evidence=AK071302 (DDBJ%2C Best hit);ORF_evidence=D6BV21 (UniProt);NIAS_FLcDNA=J023088K17;TENOR=Os05t0320300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	14879437	14879632	.	+	.	Parent=Os05t0320300-01
Chr05	irgsp1_rep	CDS	14879633	14879795	.	+	0	Parent=Os05t0320300-01
Chr05	irgsp1_rep	CDS	14879934	14879995	.	+	2	Parent=Os05t0320300-01
Chr05	irgsp1_rep	three_prime_UTR	14879996	14880262	.	+	.	Parent=Os05t0320300-01
Chr05	irgsp1_rep	three_prime_UTR	14880436	14881877	.	+	.	Parent=Os05t0320300-01
Chr05	irgsp1_rep	mRNA	14893395	14894078	.	+	.	ID=Os05t0320500-00;Name=Os05t0320500-00;Locus_id=Os05g0320500;Note=Conserved hypothetical protein.;Transcript_evidence=EU961633 (DDBJ);ORF_evidence=NP_001174347.1 (RefSeq);TENOR=Os05t0320500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	14893395	14893395	.	+	.	Parent=Os05t0320500-00
Chr05	irgsp1_rep	CDS	14893396	14893800	.	+	0	Parent=Os05t0320500-00
Chr05	irgsp1_rep	CDS	14893920	14894078	.	+	0	Parent=Os05t0320500-00
Chr05	irgsp1_rep	mRNA	14899987	14904546	.	-	.	ID=Os05t0320700-02;Name=Os05t0320700-02;Locus_id=Os05g0320700;Oryzabase Gene Symbol Synonym(s)=C4H2%2C OsC4H%2C OsC4HL%2C C4H%2C OsC4H2;Oryzabase Gene Name Synonym(s)=cinnamate 4-hydroxylase 2%2C C4H-like gene%2C Cinnamate-4-Hydroxylase like gene;Note=Similar to CytoChrome P450.;Transcript_evidence=AK100598 (DDBJ%2C Best hit),AK104994 (DDBJ%2C Best hit);ORF_evidence=NP_001149158.1 (RefSeq);NIAS_FLcDNA=J023107C01,001-002-H11;Oryzabase=16718;Expression=AK100598;TENOR=Os05t0320700-02;KEGG=Os05t0320700-02 (EC:1.14.13.11)
Chr05	irgsp1_rep	five_prime_UTR	14904471	14904546	.	-	.	Parent=Os05t0320700-02
Chr05	irgsp1_rep	CDS	14903686	14904470	.	-	0	Parent=Os05t0320700-02
Chr05	irgsp1_rep	CDS	14901928	14902049	.	-	1	Parent=Os05t0320700-02
Chr05	irgsp1_rep	CDS	14900247	14900842	.	-	2	Parent=Os05t0320700-02
Chr05	irgsp1_rep	three_prime_UTR	14899987	14900246	.	-	.	Parent=Os05t0320700-02
Chr05	irgsp1_rep	mRNA	14900247	14900847	.	+	.	ID=Os05t0320750-00;Name=Os05t0320750-00;Locus_id=Os05g0320750;Note=Hypothetical gene.;Transcript_evidence=EU953938 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0320750-00
Chr05	irgsp1_rep	CDS	14900247	14900847	.	+	0	Parent=Os05t0320750-00
Chr05	irgsp1_rep	mRNA	14906587	14907252	.	+	.	ID=Os05t0320800-01;Name=Os05t0320800-01;Locus_id=Os05g0320800;Note=Hypothetical protein.;Transcript_evidence=AK063142 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-111-G10;Expression=AK063142;TENOR=Os05t0320800-01;KEGG=Os05t0320800-01
Chr05	irgsp1_rep	five_prime_UTR	14906587	14906664	.	+	.	Parent=Os05t0320800-01
Chr05	irgsp1_rep	CDS	14906665	14906961	.	+	0	Parent=Os05t0320800-01
Chr05	irgsp1_rep	three_prime_UTR	14906962	14907252	.	+	.	Parent=Os05t0320800-01
Chr05	irgsp1_rep	mRNA	14937027	14937869	.	+	.	ID=Os05t0321600-01;Name=Os05t0321600-01;Locus_id=Os05g0321600;Note=Conserved hypothetical protein.;Transcript_evidence=AK062802 (DDBJ%2C Best hit);ORF_evidence=A2Y378 (UniProt);NIAS_FLcDNA=001-107-D02;TENOR=Os05t0321600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	14937027	14937517	.	+	.	Parent=Os05t0321600-01
Chr05	irgsp1_rep	CDS	14937518	14937703	.	+	0	Parent=Os05t0321600-01
Chr05	irgsp1_rep	three_prime_UTR	14937704	14937869	.	+	.	Parent=Os05t0321600-01
Chr05	irgsp1_rep	mRNA	14948062	14953148	.	+	.	ID=Os05t0321900-01;Name=Os05t0321900-01;Locus_id=Os05g0321900;CGSNL Gene Symbol=WRKY75;CGSNL Gene Name=WRKY GENE 75;Oryzabase Gene Symbol Synonym(s)=OsWRKY75;Oryzabase Gene Name Synonym(s)=Rice WRKY gene75;Note=DNA-binding WRKY domain containing protein.;Transcript_evidence=AK287817 (DDBJ%2C Best hit);ORF_evidence=Q6IEK6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);NIAS_FLcDNA=J065181J09;Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6590;TENOR=Os05t0321900-01;KEGG=Os05t0321900-01
Chr05	irgsp1_rep	five_prime_UTR	14948062	14948083	.	+	.	Parent=Os05t0321900-01
Chr05	irgsp1_rep	CDS	14948084	14948694	.	+	0	Parent=Os05t0321900-01
Chr05	irgsp1_rep	CDS	14949670	14949801	.	+	1	Parent=Os05t0321900-01
Chr05	irgsp1_rep	CDS	14952261	14952804	.	+	1	Parent=Os05t0321900-01
Chr05	irgsp1_rep	three_prime_UTR	14952805	14953148	.	+	.	Parent=Os05t0321900-01
Chr05	irgsp1_rep	mRNA	14991579	14993668	.	+	.	ID=Os05t0322900-01;Name=Os05t0322900-01;Locus_id=Os05g0322900;RAP-DB Gene Symbol Synonym(s)=WRKY45%2C OsWRKY45;RAP-DB Gene Name Synonym(s)=WRKY GENE 45%2C Rice WRKY gene45;CGSNL Gene Symbol=WRKY45;CGSNL Gene Name=WRKY GENE 45;Oryzabase Gene Symbol Synonym(s)=OsWRKY45;Oryzabase Gene Name Synonym(s)=Rice WRKY gene45;Note=WRKY transcription factor%2C Benzothiadiazole (BTH)-inducible blast resistance;Transcript_evidence=AK066255,AK103959;ORF_evidence=Q5W6D6;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);NIAS_FLcDNA=001-015-C02, J013058O04;Manual Curation=December 3%2C 2009;Literature_PMID=17601827,23013464,23696671;Oryzabase=6559;Expression=AK103959;TENOR=Os05t0322900-01;KEGG=Os05t0322900-01
Chr05	irgsp1_rep	five_prime_UTR	14991579	14991692	.	+	.	Parent=Os05t0322900-01
Chr05	irgsp1_rep	CDS	14991693	14992000	.	+	0	Parent=Os05t0322900-01
Chr05	irgsp1_rep	CDS	14992594	14992698	.	+	1	Parent=Os05t0322900-01
Chr05	irgsp1_rep	CDS	14992800	14993367	.	+	1	Parent=Os05t0322900-01
Chr05	irgsp1_rep	three_prime_UTR	14993368	14993668	.	+	.	Parent=Os05t0322900-01
Chr05	irgsp1_rep	mRNA	14991579	14993673	.	+	.	ID=Os05t0322900-02;Name=Os05t0322900-02;Locus_id=Os05g0322900;CGSNL Gene Symbol=WRKY45;CGSNL Gene Name=WRKY GENE 45;Oryzabase Gene Symbol Synonym(s)=OsWRKY45;Oryzabase Gene Name Synonym(s)=Rice WRKY gene45;Note=Similar to WRKY transcription factor 45.;Transcript_evidence=AK105939 (DDBJ%2C Best hit);ORF_evidence=Q6IEN6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);NIAS_FLcDNA=001-205-B10;Oryzabase=6559;Expression=AK105939;TENOR=Os05t0322900-02;KEGG=Os05t0322900-02
Chr05	irgsp1_rep	five_prime_UTR	14991579	14991692	.	+	.	Parent=Os05t0322900-02
Chr05	irgsp1_rep	CDS	14991693	14992000	.	+	0	Parent=Os05t0322900-02
Chr05	irgsp1_rep	CDS	14992594	14992702	.	+	1	Parent=Os05t0322900-02
Chr05	irgsp1_rep	three_prime_UTR	14992703	14992924	.	+	.	Parent=Os05t0322900-02
Chr05	irgsp1_rep	three_prime_UTR	14992998	14993673	.	+	.	Parent=Os05t0322900-02
Chr05	irgsp1_rep	mRNA	14991579	14992206	.	+	.	ID=Os05t0322900-03;Name=Os05t0322900-03;Locus_id=Os05g0322900;CGSNL Gene Symbol=WRKY45;CGSNL Gene Name=WRKY GENE 45;Oryzabase Gene Symbol Synonym(s)=OsWRKY45;Oryzabase Gene Name Synonym(s)=Rice WRKY gene45;Note=Similar to WRKY transcription factor 45.;Transcript_evidence=AK063697 (DDBJ%2C Best hit);ORF_evidence=Q6IEN6 (UniProt);NIAS_FLcDNA=001-119-G04;Oryzabase=6559;Expression=AK063697;TENOR=Os05t0322900-03;KEGG=Os05t0322900-03
Chr05	irgsp1_rep	five_prime_UTR	14991579	14991692	.	+	.	Parent=Os05t0322900-03
Chr05	irgsp1_rep	CDS	14991693	14992004	.	+	0	Parent=Os05t0322900-03
Chr05	irgsp1_rep	three_prime_UTR	14992005	14992206	.	+	.	Parent=Os05t0322900-03
Chr05	irgsp1_rep	mRNA	14997859	15000768	.	+	.	ID=Os05t0323100-01;Name=Os05t0323100-01;Locus_id=Os05g0323100;CGSNL Gene Symbol=STR17;CGSNL Gene Name=SULFURTRANSFERASE 17;Oryzabase Gene Symbol Synonym(s)=OsStr17;Oryzabase Gene Name Synonym(s)=Sulfurtransferase 17;Note=Rhodanese-like domain containing protein.;Transcript_evidence=AK109472 (DDBJ%2C Best hit);ORF_evidence=NP_565940.1 (RefSeq);InterPro=Rhodanese-like (IPR001763);NIAS_FLcDNA=001-128-E12;Oryzabase=12067;Expression=AK109472;TENOR=Os05t0323100-01;KEGG=Os05t0323100-01
Chr05	irgsp1_rep	five_prime_UTR	14997859	14997884	.	+	.	Parent=Os05t0323100-01
Chr05	irgsp1_rep	CDS	14997885	14998247	.	+	0	Parent=Os05t0323100-01
Chr05	irgsp1_rep	CDS	14998689	14998940	.	+	0	Parent=Os05t0323100-01
Chr05	irgsp1_rep	CDS	14999028	14999126	.	+	0	Parent=Os05t0323100-01
Chr05	irgsp1_rep	CDS	14999244	14999537	.	+	0	Parent=Os05t0323100-01
Chr05	irgsp1_rep	CDS	15000085	15000465	.	+	0	Parent=Os05t0323100-01
Chr05	irgsp1_rep	three_prime_UTR	15000466	15000768	.	+	.	Parent=Os05t0323100-01
Chr05	irgsp1_rep	mRNA	15006215	15007071	.	-	.	ID=Os05t0323400-01;Name=Os05t0323400-01;Locus_id=Os05g0323400;Note=Hypothetical protein.;Transcript_evidence=AK063052 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-110-E06;Expression=AK063052;TENOR=Os05t0323400-01;KEGG=Os05t0323400-01
Chr05	irgsp1_rep	five_prime_UTR	15007012	15007071	.	-	.	Parent=Os05t0323400-01
Chr05	irgsp1_rep	five_prime_UTR	15006737	15006794	.	-	.	Parent=Os05t0323400-01
Chr05	irgsp1_rep	CDS	15006524	15006736	.	-	0	Parent=Os05t0323400-01
Chr05	irgsp1_rep	three_prime_UTR	15006215	15006523	.	-	.	Parent=Os05t0323400-01
Chr05	irgsp1_rep	mRNA	15040797	15044759	.	+	.	ID=Os05t0323800-01;Name=Os05t0323800-01;Locus_id=Os05g0323800;RAP-DB Gene Symbol Synonym(s)=OsAGSW1;RAP-DB Gene Name Synonym(s)=ABC1-like kinase related to Grain size and Weight 1;Oryzabase Gene Symbol Synonym(s)=OsAGSW1%2C AGSW1;Oryzabase Gene Name Synonym(s)=ABC1-like kinase related to Grain size and Weight 1;Note=ABC1 (Activity of bc1 complex)-like kinase%2C Regulation of grain size and weight;Transcript_evidence=AK101553 (truncated),Inferred from literature;ORF_evidence=A0A0P0WKQ1 (truncated);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),Armadillo-type fold (IPR016024),UbiB domain (IPR004147),Protein kinase domain (IPR000719);NIAS_FLcDNA=J033049N14 (truncated);Manual Curation=January 15%2C 2019;Literature_PMID=25922483;Oryzabase=21729;TENOR=Os05t0323800-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=chloroplast (GO:0009507)
Chr05	irgsp1_rep	five_prime_UTR	15040797	15040930	.	+	.	Parent=Os05t0323800-01
Chr05	irgsp1_rep	CDS	15040931	15041311	.	+	0	Parent=Os05t0323800-01
Chr05	irgsp1_rep	CDS	15041404	15041634	.	+	0	Parent=Os05t0323800-01
Chr05	irgsp1_rep	CDS	15041976	15042311	.	+	0	Parent=Os05t0323800-01
Chr05	irgsp1_rep	CDS	15043027	15043582	.	+	0	Parent=Os05t0323800-01
Chr05	irgsp1_rep	CDS	15043673	15043859	.	+	2	Parent=Os05t0323800-01
Chr05	irgsp1_rep	CDS	15043975	15044341	.	+	1	Parent=Os05t0323800-01
Chr05	irgsp1_rep	CDS	15044444	15044566	.	+	0	Parent=Os05t0323800-01
Chr05	irgsp1_rep	three_prime_UTR	15044567	15044759	.	+	.	Parent=Os05t0323800-01
Chr05	irgsp1_rep	mRNA	15043056	15044664	.	+	.	ID=Os05t0323800-02;Name=Os05t0323800-02;Locus_id=Os05g0323800;Oryzabase Gene Symbol Synonym(s)=OsAGSW1%2C AGSW1;Oryzabase Gene Name Synonym(s)=ABC1-like kinase related to Grain size and Weight 1;Note=Similar to ubiquinone biosynthesis protein ubiB.;Transcript_evidence=AK059093 (DDBJ%2C Best hit);ORF_evidence=NP_001152417.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=001-022-C02;Oryzabase=21729;Expression=AK059093;TENOR=Os05t0323800-02;KEGG=Os05t0323800-02
Chr05	irgsp1_rep	five_prime_UTR	15043056	15043056	.	+	.	Parent=Os05t0323800-02
Chr05	irgsp1_rep	CDS	15043057	15043582	.	+	0	Parent=Os05t0323800-02
Chr05	irgsp1_rep	CDS	15043673	15043856	.	+	2	Parent=Os05t0323800-02
Chr05	irgsp1_rep	CDS	15043972	15044341	.	+	1	Parent=Os05t0323800-02
Chr05	irgsp1_rep	CDS	15044444	15044566	.	+	0	Parent=Os05t0323800-02
Chr05	irgsp1_rep	three_prime_UTR	15044567	15044664	.	+	.	Parent=Os05t0323800-02
Chr05	irgsp1_rep	mRNA	15046751	15051399	.	+	.	ID=Os05t0323900-01;Name=Os05t0323900-01;Locus_id=Os05g0323900;RAP-DB Gene Symbol Synonym(s)=SODA1%2C SodA1%2C Mn-SOD%2C Mn- SOD%2C OsMSD%2C OsMSD1;RAP-DB Gene Name Synonym(s)=SUPEROXIDE DISMUTASE A1%2C Superoxide dismutase A1%2C Manganese Superoxide Dismutase%2C Manganese-Superoxide Dismutase;CGSNL Gene Symbol=SODA1;CGSNL Gene Name=SUPEROXIDE DISMUTASE A1;Oryzabase Gene Symbol Synonym(s)=SodA1%2C Mn-SOD%2C Mn- SOD%2C OsMSD%2C MnSOD%2C MnSOD1;Oryzabase Gene Name Synonym(s)=Superoxide dismutase A1%2C mitochondrial Mn-SOD%2C Mitochondrial Manganese Superoxide Dismutase%2C Manganese Superoxide Dismutase%2C Manganese-Superoxide Dismutase;Note=Manganese superoxide dismutase%2C Heat-stress tolerance;Transcript_evidence=AK070528,AK104030,AK104160,L19436,AB026725;ORF_evidence=Q43008;GO=Biological Process: superoxide metabolic process (GO:0006801),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: superoxide dismutase activity (GO:0004784),Molecular Function: metal ion binding (GO:0046872);InterPro=Manganese/iron superoxide dismutase (IPR001189),Manganese/iron superoxide dismutase%2C N-terminal (IPR019831),Manganese/iron superoxide dismutase%2C C-terminal (IPR019832),Manganese/iron superoxide dismutase%2C binding site (IPR019833);NIAS_FLcDNA=J023060D13, 001-020-C01, 006-211-E09;Manual Curation=February 4%2C 2016;Literature_PMID=25586098,8290649;Oryzabase=9277;TENOR=Os05t0323900-01
Chr05	irgsp1_rep	five_prime_UTR	15046751	15046811	.	+	.	Parent=Os05t0323900-01
Chr05	irgsp1_rep	CDS	15046812	15047106	.	+	0	Parent=Os05t0323900-01
Chr05	irgsp1_rep	CDS	15049208	15049254	.	+	2	Parent=Os05t0323900-01
Chr05	irgsp1_rep	CDS	15049363	15049488	.	+	0	Parent=Os05t0323900-01
Chr05	irgsp1_rep	CDS	15049585	15049641	.	+	0	Parent=Os05t0323900-01
Chr05	irgsp1_rep	CDS	15050406	15050483	.	+	0	Parent=Os05t0323900-01
Chr05	irgsp1_rep	CDS	15051137	15051229	.	+	0	Parent=Os05t0323900-01
Chr05	irgsp1_rep	three_prime_UTR	15051230	15051399	.	+	.	Parent=Os05t0323900-01
Chr05	irgsp1_rep	mRNA	15052396	15054547	.	+	.	ID=Os05t0324000-01;Name=Os05t0324000-01;Locus_id=Os05g0324000;Note=Conserved hypothetical protein.;Transcript_evidence=AK103719 (DDBJ%2C Best hit);ORF_evidence=A2Y385 (UniProt);NIAS_FLcDNA=J033138A04;Expression=AK103719;TENOR=Os05t0324000-01;KEGG=Os05t0324000-01
Chr05	irgsp1_rep	five_prime_UTR	15052396	15052591	.	+	.	Parent=Os05t0324000-01
Chr05	irgsp1_rep	CDS	15052592	15054337	.	+	0	Parent=Os05t0324000-01
Chr05	irgsp1_rep	three_prime_UTR	15054338	15054547	.	+	.	Parent=Os05t0324000-01
Chr05	irgsp1_rep	mRNA	15053135	15054572	.	+	.	ID=Os05t0324000-02;Name=Os05t0324000-02;Locus_id=Os05g0324000;Note=Hypothetical conserved gene.;Transcript_evidence=AK073286 (DDBJ%2C Best hit);ORF_evidence=B9FGP2 (UniProt);NIAS_FLcDNA=J033028J19;Expression=AK073286;TENOR=Os05t0324000-02;KEGG=Os05t0324000-02
Chr05	irgsp1_rep	CDS	15053135	15054337	.	+	0	Parent=Os05t0324000-02
Chr05	irgsp1_rep	three_prime_UTR	15054338	15054572	.	+	.	Parent=Os05t0324000-02
Chr05	irgsp1_rep	mRNA	15054721	15055743	.	-	.	ID=Os05t0324100-01;Name=Os05t0324100-01;Locus_id=Os05g0324100;Note=N2%2CN2-dimethylguanosine tRNA methyltransferase family protein.;Transcript_evidence=AK059071 (DDBJ%2C Best hit);ORF_evidence=NP_191192.1 (RefSeq);GO=Biological Process: tRNA processing (GO:0008033),Molecular Function: RNA binding (GO:0003723),Molecular Function: tRNA (guanine-N2-)-methyltransferase activity (GO:0004809);InterPro=N2%2CN2-dimethylguanosine tRNA methyltransferase (IPR002905);NIAS_FLcDNA=001-021-H06;Expression=AK059071;TENOR=Os05t0324100-01;KEGG=Os05t0324100-01
Chr05	irgsp1_rep	CDS	15055618	15055743	.	-	0	Parent=Os05t0324100-01
Chr05	irgsp1_rep	CDS	15055448	15055510	.	-	0	Parent=Os05t0324100-01
Chr05	irgsp1_rep	CDS	15055109	15055216	.	-	0	Parent=Os05t0324100-01
Chr05	irgsp1_rep	three_prime_UTR	15054721	15055108	.	-	.	Parent=Os05t0324100-01
Chr05	irgsp1_rep	mRNA	15057416	15058253	.	-	.	ID=Os05t0324200-01;Name=Os05t0324200-01;Locus_id=Os05g0324200;Note=N2%2CN2-dimethylguanosine tRNA methyltransferase family protein.;Transcript_evidence=AK108151 (DDBJ%2C Best hit);ORF_evidence=NP_191192.1 (RefSeq);GO=Biological Process: tRNA processing (GO:0008033),Molecular Function: RNA binding (GO:0003723),Molecular Function: tRNA (guanine-N2-)-methyltransferase activity (GO:0004809);InterPro=N2%2CN2-dimethylguanosine tRNA methyltransferase (IPR002905);NIAS_FLcDNA=002-139-F10;Expression=AK108151;TENOR=Os05t0324200-01;KEGG=Os05t0324200-01 (EC:2.1.1.32)
Chr05	irgsp1_rep	five_prime_UTR	15058163	15058253	.	-	.	Parent=Os05t0324200-01
Chr05	irgsp1_rep	CDS	15057551	15058162	.	-	0	Parent=Os05t0324200-01
Chr05	irgsp1_rep	three_prime_UTR	15057416	15057550	.	-	.	Parent=Os05t0324200-01
Chr05	irgsp1_rep	mRNA	15062001	15066256	.	+	.	ID=Os05t0324300-01;Name=Os05t0324300-01;Locus_id=Os05g0324300;Note=Protein of unknown function DUF594 domain containing protein.;Transcript_evidence=AK067550 (DDBJ%2C Best hit);ORF_evidence=A2Y387 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);NIAS_FLcDNA=J013108F24;Expression=AK067550;TENOR=Os05t0324300-01;KEGG=Os05t0324300-01
Chr05	irgsp1_rep	five_prime_UTR	15062001	15064191	.	+	.	Parent=Os05t0324300-01
Chr05	irgsp1_rep	CDS	15064192	15066153	.	+	0	Parent=Os05t0324300-01
Chr05	irgsp1_rep	three_prime_UTR	15066154	15066256	.	+	.	Parent=Os05t0324300-01
Chr05	irgsp1_rep	mRNA	15063954	15066402	.	-	.	ID=Os05t0324400-01;Name=Os05t0324400-01;Locus_id=Os05g0324400;Note=Hypothetical protein.;Transcript_evidence=AK109805 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-147-F11;Expression=AK109805;TENOR=Os05t0324400-01;KEGG=Os05t0324400-01
Chr05	irgsp1_rep	five_prime_UTR	15065197	15066402	.	-	.	Parent=Os05t0324400-01
Chr05	irgsp1_rep	CDS	15064915	15065196	.	-	0	Parent=Os05t0324400-01
Chr05	irgsp1_rep	three_prime_UTR	15063954	15064914	.	-	.	Parent=Os05t0324400-01
Chr05	irgsp1_rep	mRNA	15069432	15070481	.	-	.	ID=Os05t0324600-01;Name=Os05t0324600-01;Locus_id=Os05g0324600;RAP-DB Gene Symbol Synonym(s)=OsOFP19;RAP-DB Gene Name Synonym(s)=OVATE family protein 19;Oryzabase Gene Symbol Synonym(s)=OsOFP13%2C OsOFP19%2C OFP13%2C OFP19;Oryzabase Gene Name Synonym(s)=OVATE family protein 13%2C ovate family protein 19%2C OVATE-domain containing protein 19;Note=OVATE domain-containing protein%2C Negative modulation of brassinosteroid (BR) response%2C Modulation of plant architecture;Transcript_evidence=AK107504;ORF_evidence=Q5W6T7;GO=Molecular Function: DNA binding (GO:0003677);InterPro=DNA-binding domain%2C ovate family-like (IPR025830),Ovate  protein family%2C C-terminal (IPR006458);NIAS_FLcDNA=002-129-E04;Manual Curation=January 12%2C 2018;Literature_PMID=29205590;Oryzabase=18309;Expression=AK107504;TENOR=Os05t0324600-01;KEGG=Os05t0324600-01
Chr05	irgsp1_rep	five_prime_UTR	15070324	15070481	.	-	.	Parent=Os05t0324600-01
Chr05	irgsp1_rep	CDS	15069541	15070323	.	-	0	Parent=Os05t0324600-01
Chr05	irgsp1_rep	three_prime_UTR	15069432	15069540	.	-	.	Parent=Os05t0324600-01
Chr05	irgsp1_rep	mRNA	15076550	15077125	.	+	.	ID=Os05t0324650-01;Name=Os05t0324650-01;Locus_id=Os05g0324650;Note=Non-protein coding transcript.;Transcript_evidence=AK241327 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065143K08;TENOR=Os05t0324650-01
Chr05	irgsp1_rep	exon	15076550	15077125	.	+	.	Parent=Os05t0324650-01
Chr05	irgsp1_rep	mRNA	15077683	15078347	.	-	.	ID=Os05t0324700-01;Name=Os05t0324700-01;Locus_id=Os05g0324700;Note=Conserved hypothetical protein.;Transcript_evidence=AK063581 (DDBJ%2C Best hit);ORF_evidence=B9FGP5 (UniProt);NIAS_FLcDNA=001-117-H10;Expression=AK063581;TENOR=Os05t0324700-01;KEGG=Os05t0324700-01
Chr05	irgsp1_rep	five_prime_UTR	15078247	15078347	.	-	.	Parent=Os05t0324700-01
Chr05	irgsp1_rep	CDS	15077977	15078246	.	-	0	Parent=Os05t0324700-01
Chr05	irgsp1_rep	three_prime_UTR	15077683	15077976	.	-	.	Parent=Os05t0324700-01
Chr05	irgsp1_rep	mRNA	15081429	15083245	.	+	.	ID=Os05t0325000-00;Name=Os05t0325000-00;Locus_id=Os05g0325000;Note=Similar to OSIGBa0140J09.3 protein.;Transcript_evidence=BT023986 (DDBJ);ORF_evidence=Q01I18 (UniProt);TENOR=Os05t0325000-00;KEGG=Os05t0325000-00
Chr05	irgsp1_rep	CDS	15081429	15081992	.	+	0	Parent=Os05t0325000-00
Chr05	irgsp1_rep	CDS	15082949	15083032	.	+	0	Parent=Os05t0325000-00
Chr05	irgsp1_rep	three_prime_UTR	15083033	15083057	.	+	.	Parent=Os05t0325000-00
Chr05	irgsp1_rep	three_prime_UTR	15083142	15083245	.	+	.	Parent=Os05t0325000-00
Chr05	irgsp1_rep	mRNA	15084916	15086140	.	+	.	ID=Os05t0325200-01;Name=Os05t0325200-01;Locus_id=Os05g0325200;Note=Cyclin-related 2 domain containing protein.;Transcript_evidence=AK242698 (DDBJ%2C Best hit);ORF_evidence=B7ERZ0 (UniProt);GO=Biological Process: regulation of cyclin-dependent protein kinase activity (GO:0000079),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin PHO80-like (IPR013922);NIAS_FLcDNA=J090038J19;TENOR=Os05t0325200-01;KEGG=Os05t0325200-01
Chr05	irgsp1_rep	five_prime_UTR	15084916	15085013	.	+	.	Parent=Os05t0325200-01
Chr05	irgsp1_rep	CDS	15085014	15085742	.	+	0	Parent=Os05t0325200-01
Chr05	irgsp1_rep	three_prime_UTR	15085743	15086140	.	+	.	Parent=Os05t0325200-01
Chr05	irgsp1_rep	mRNA	15092247	15095115	.	-	.	ID=Os05t0325400-01;Name=Os05t0325400-01;Locus_id=Os05g0325400;Note=Conserved hypothetical protein.;Transcript_evidence=AK100476 (DDBJ%2C Best hit);ORF_evidence=B9ESW0 (UniProt);NIAS_FLcDNA=J023094C07;TENOR=Os05t0325400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	15094780	15095115	.	-	.	Parent=Os05t0325400-01
Chr05	irgsp1_rep	five_prime_UTR	15094410	15094643	.	-	.	Parent=Os05t0325400-01
Chr05	irgsp1_rep	five_prime_UTR	15093552	15094326	.	-	.	Parent=Os05t0325400-01
Chr05	irgsp1_rep	five_prime_UTR	15093111	15093440	.	-	.	Parent=Os05t0325400-01
Chr05	irgsp1_rep	CDS	15092727	15093110	.	-	0	Parent=Os05t0325400-01
Chr05	irgsp1_rep	three_prime_UTR	15092247	15092726	.	-	.	Parent=Os05t0325400-01
Chr05	irgsp1_rep	mRNA	15093552	15095114	.	-	.	ID=Os05t0325400-02;Name=Os05t0325400-02;Locus_id=Os05g0325400;Note=Hypothetical conserved gene.;Transcript_evidence=AK111393 (DDBJ%2C Best hit);ORF_evidence=Q5W6T3 (UniProt);NIAS_FLcDNA=002-182-C07;Expression=AK111393;TENOR=Os05t0325400-02;KEGG=Os05t0325400-02
Chr05	irgsp1_rep	five_prime_UTR	15095021	15095114	.	-	.	Parent=Os05t0325400-02
Chr05	irgsp1_rep	CDS	15094780	15095020	.	-	0	Parent=Os05t0325400-02
Chr05	irgsp1_rep	CDS	15094618	15094643	.	-	2	Parent=Os05t0325400-02
Chr05	irgsp1_rep	three_prime_UTR	15094571	15094617	.	-	.	Parent=Os05t0325400-02
Chr05	irgsp1_rep	three_prime_UTR	15094398	15094500	.	-	.	Parent=Os05t0325400-02
Chr05	irgsp1_rep	three_prime_UTR	15093552	15094326	.	-	.	Parent=Os05t0325400-02
Chr05	irgsp1_rep	mRNA	15124584	15125827	.	+	.	ID=Os05t0326400-01;Name=Os05t0326400-01;Locus_id=Os05g0326400;Note=Cyclin-related 2 domain containing protein.;Transcript_evidence=AK061394 (DDBJ%2C Best hit);ORF_evidence=B7ERZ0 (UniProt);GO=Biological Process: regulation of cyclin-dependent protein kinase activity (GO:0000079),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin PHO80-like (IPR013922);NIAS_FLcDNA=006-305-D12;Expression=AK061394;TENOR=Os05t0326400-01;KEGG=Os05t0326400-01
Chr05	irgsp1_rep	five_prime_UTR	15124584	15124711	.	+	.	Parent=Os05t0326400-01
Chr05	irgsp1_rep	CDS	15124712	15125161	.	+	0	Parent=Os05t0326400-01
Chr05	irgsp1_rep	three_prime_UTR	15125162	15125827	.	+	.	Parent=Os05t0326400-01
Chr05	irgsp1_rep	mRNA	15129398	15131491	.	-	.	ID=Os05t0326600-01;Name=Os05t0326600-01;Locus_id=Os05g0326600;Note=Conserved hypothetical protein.;Transcript_evidence=AK119497 (DDBJ%2C Best hit);ORF_evidence=Q5W6T3 (UniProt);NIAS_FLcDNA=001-134-E03;TENOR=Os05t0326600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	15131490	15131491	.	-	.	Parent=Os05t0326600-01
Chr05	irgsp1_rep	CDS	15131268	15131489	.	-	0	Parent=Os05t0326600-01
Chr05	irgsp1_rep	three_prime_UTR	15131191	15131267	.	-	.	Parent=Os05t0326600-01
Chr05	irgsp1_rep	three_prime_UTR	15130537	15130940	.	-	.	Parent=Os05t0326600-01
Chr05	irgsp1_rep	three_prime_UTR	15130056	15130193	.	-	.	Parent=Os05t0326600-01
Chr05	irgsp1_rep	three_prime_UTR	15129398	15129910	.	-	.	Parent=Os05t0326600-01
Chr05	irgsp1_rep	mRNA	15132717	15134330	.	-	.	ID=Os05t0326625-00;Name=Os05t0326625-00;Locus_id=Os05g0326625;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B8AWM8 (UniProt);TENOR=Os05t0326625-00;KEGG=Os05t0326625-00
Chr05	irgsp1_rep	CDS	15134273	15134330	.	-	0	Parent=Os05t0326625-00
Chr05	irgsp1_rep	CDS	15133804	15133865	.	-	2	Parent=Os05t0326625-00
Chr05	irgsp1_rep	CDS	15132717	15133310	.	-	0	Parent=Os05t0326625-00
Chr05	irgsp1_rep	mRNA	15146188	15147334	.	+	.	ID=Os05t0326675-00;Name=Os05t0326675-00;Locus_id=Os05g0326675;Note=Ribonuclease H-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5W690 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Ribonuclease H-like (IPR012337);TENOR=Os05t0326675-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	15146188	15146647	.	+	0	Parent=Os05t0326675-00
Chr05	irgsp1_rep	CDS	15147063	15147334	.	+	2	Parent=Os05t0326675-00
Chr05	irgsp1_rep	mRNA	15154374	15157787	.	+	.	ID=Os05t0326700-01;Name=Os05t0326700-01;Locus_id=Os05g0326700;Note=Hypothetical protein.;Transcript_evidence=AK119280 (DDBJ%2C Best hit),AK106862 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-130-C02,002-118-C07;TENOR=Os05t0326700-01
Chr05	irgsp1_rep	five_prime_UTR	15154374	15154531	.	+	.	Parent=Os05t0326700-01
Chr05	irgsp1_rep	CDS	15154532	15154805	.	+	0	Parent=Os05t0326700-01
Chr05	irgsp1_rep	CDS	15154925	15154941	.	+	2	Parent=Os05t0326700-01
Chr05	irgsp1_rep	three_prime_UTR	15154942	15155090	.	+	.	Parent=Os05t0326700-01
Chr05	irgsp1_rep	three_prime_UTR	15155185	15157787	.	+	.	Parent=Os05t0326700-01
Chr05	irgsp1_rep	mRNA	15164489	15166464	.	-	.	ID=Os05t0327000-01;Name=Os05t0327000-01;Locus_id=Os05g0327000;Oryzabase Gene Symbol Synonym(s)=OsSTA145%2C STA145;Note=Similar to cDNA clone:J033051A05%2C full insert sequence.;Transcript_evidence=AK064059 (DDBJ%2C Best hit);ORF_evidence=B7ERZ0 (UniProt);NIAS_FLcDNA=001-125-F08;Oryzabase=19434;TENOR=Os05t0327000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	15166068	15166464	.	-	.	Parent=Os05t0327000-01
Chr05	irgsp1_rep	CDS	15165603	15166067	.	-	0	Parent=Os05t0327000-01
Chr05	irgsp1_rep	three_prime_UTR	15164901	15165602	.	-	.	Parent=Os05t0327000-01
Chr05	irgsp1_rep	three_prime_UTR	15164685	15164783	.	-	.	Parent=Os05t0327000-01
Chr05	irgsp1_rep	three_prime_UTR	15164489	15164581	.	-	.	Parent=Os05t0327000-01
Chr05	irgsp1_rep	mRNA	15164489	15166433	.	-	.	ID=Os05t0327000-02;Name=Os05t0327000-02;Locus_id=Os05g0327000;Oryzabase Gene Symbol Synonym(s)=OsSTA145%2C STA145;Note=Hypothetical conserved gene.;Transcript_evidence=AK101588 (DDBJ%2C Best hit);ORF_evidence=NP_001055203.1 (RefSeq);NIAS_FLcDNA=J033051A05;Oryzabase=19434;Expression=AK101588;TENOR=Os05t0327000-02;KEGG=Os05t0327000-02
Chr05	irgsp1_rep	five_prime_UTR	15166433	15166433	.	-	.	Parent=Os05t0327000-02
Chr05	irgsp1_rep	CDS	15166170	15166432	.	-	0	Parent=Os05t0327000-02
Chr05	irgsp1_rep	CDS	15165646	15166051	.	-	1	Parent=Os05t0327000-02
Chr05	irgsp1_rep	three_prime_UTR	15164901	15165645	.	-	.	Parent=Os05t0327000-02
Chr05	irgsp1_rep	three_prime_UTR	15164489	15164783	.	-	.	Parent=Os05t0327000-02
Chr05	irgsp1_rep	mRNA	15187818	15194790	.	+	.	ID=Os05t0327100-00;Name=Os05t0327100-00;Locus_id=Os05g0327100;Note=Pumilio RNA-binding repeat domain containing protein.;Transcript_evidence=EU944740 (DDBJ);ORF_evidence=B8AWM9 (UniProt);GO=Molecular Function: RNA binding (GO:0003723),Molecular Function: binding (GO:0005488);InterPro=Pumilio RNA-binding repeat (IPR001313),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);TENOR=Os05t0327100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	15187818	15187931	.	+	.	Parent=Os05t0327100-00
Chr05	irgsp1_rep	five_prime_UTR	15193492	15193590	.	+	.	Parent=Os05t0327100-00
Chr05	irgsp1_rep	CDS	15193591	15193803	.	+	0	Parent=Os05t0327100-00
Chr05	irgsp1_rep	CDS	15193902	15194008	.	+	0	Parent=Os05t0327100-00
Chr05	irgsp1_rep	CDS	15194175	15194214	.	+	1	Parent=Os05t0327100-00
Chr05	irgsp1_rep	three_prime_UTR	15194215	15194333	.	+	.	Parent=Os05t0327100-00
Chr05	irgsp1_rep	three_prime_UTR	15194585	15194790	.	+	.	Parent=Os05t0327100-00
Chr05	irgsp1_rep	mRNA	15245154	15245759	.	-	.	ID=Os05t0328000-01;Name=Os05t0328000-01;Locus_id=Os05g0328000;Note=Hypothetical protein.;Transcript_evidence=AK107977 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-135-E02;Expression=AK107977;TENOR=Os05t0328000-01;KEGG=Os05t0328000-01
Chr05	irgsp1_rep	five_prime_UTR	15245628	15245759	.	-	.	Parent=Os05t0328000-01
Chr05	irgsp1_rep	CDS	15245295	15245627	.	-	0	Parent=Os05t0328000-01
Chr05	irgsp1_rep	three_prime_UTR	15245154	15245294	.	-	.	Parent=Os05t0328000-01
Chr05	irgsp1_rep	mRNA	15251394	15251690	.	+	.	ID=Os05t0328300-00;Name=Os05t0328300-00;Locus_id=Os05g0328300;Oryzabase Gene Symbol Synonym(s)=OsOFP33;Oryzabase Gene Name Synonym(s)=OVATE family protein 33;Note=Similar to OFP17 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 17).;Transcript_evidence=ab initio prediction;ORF_evidence=NP_850144.2 (RefSeq);Oryzabase=18329;TENOR=Os05t0328300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	15251394	15251690	.	+	0	Parent=Os05t0328300-00
Chr05	irgsp1_rep	mRNA	15266307	15266924	.	+	.	ID=Os05t0328333-00;Name=Os05t0328333-00;Locus_id=Os05g0328333;Oryzabase Gene Symbol Synonym(s)=Prol-03%2C pro13b.5;Note=Similar to Prolamin.;Transcript_evidence=AK242260 (DDBJ%2C Secondary hit);ORF_evidence=Q5EFA4 (UniProt);Oryzabase=15138;TENOR=Os05t0328333-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	15266307	15266419	.	+	.	Parent=Os05t0328333-00
Chr05	irgsp1_rep	CDS	15266420	15266665	.	+	0	Parent=Os05t0328333-00
Chr05	irgsp1_rep	three_prime_UTR	15266666	15266924	.	+	.	Parent=Os05t0328333-00
Chr05	irgsp1_rep	mRNA	15272214	15272495	.	+	.	ID=Os05t0328466-00;Name=Os05t0328466-00;Locus_id=Os05g0328466;Oryzabase Gene Symbol Synonym(s)=pro13b.6%2C Prol-07;Note=Similar to Prolamin.;Transcript_evidence=P0C5E5 (UniProt);ORF_evidence=Q5EFA4 (UniProt);Oryzabase=19808;TENOR=Os05t0328466-00;KEGG=Os05t0328466-00
Chr05	irgsp1_rep	CDS	15272214	15272495	.	+	0	Parent=Os05t0328466-00
Chr05	irgsp1_rep	mRNA	15277480	15278102	.	+	.	ID=Os05t0328632-00;Name=Os05t0328632-00;Locus_id=Os05g0328632;Oryzabase Gene Symbol Synonym(s)=pro13b.7;Note=Similar to Prolamin.;Transcript_evidence=AK242260 (DDBJ%2C Secondary hit);ORF_evidence=Q5EFA4 (UniProt);Oryzabase=19809;TENOR=Os05t0328632-00;KEGG=Os05t0328632-00
Chr05	irgsp1_rep	five_prime_UTR	15277480	15277537	.	+	.	Parent=Os05t0328632-00
Chr05	irgsp1_rep	CDS	15277538	15277771	.	+	0	Parent=Os05t0328632-00
Chr05	irgsp1_rep	three_prime_UTR	15277772	15278102	.	+	.	Parent=Os05t0328632-00
Chr05	irgsp1_rep	mRNA	15330498	15331095	.	+	.	ID=Os05t0328800-00;Name=Os05t0328800-00;Locus_id=Os05g0328800;Oryzabase Gene Symbol Synonym(s)=Prol-04%2C pro13b.8%2C PROLM4;Oryzabase Gene Name Synonym(s)=Prolamin 4;Note=Prolamin 7.;Transcript_evidence=X53857 (DDBJ%2C Best hit);ORF_evidence=Q5EFA4 (UniProt);InterPro=Bifunctional trypsin/alpha-amylase inhibitor (IPR013771);Oryzabase=15139;TENOR=Os05t0328800-00;KEGG=Os05t0328800-00
Chr05	irgsp1_rep	five_prime_UTR	15330498	15330530	.	+	.	Parent=Os05t0328800-00
Chr05	irgsp1_rep	CDS	15330531	15330983	.	+	0	Parent=Os05t0328800-00
Chr05	irgsp1_rep	three_prime_UTR	15330984	15331095	.	+	.	Parent=Os05t0328800-00
Chr05	irgsp1_rep	mRNA	15333034	15333656	.	+	.	ID=Os05t0328901-00;Name=Os05t0328901-00;Locus_id=Os05g0328901;Oryzabase Gene Symbol Synonym(s)=Prol-05%2C pro13b.9;Note=Similar to Prolamin.;Transcript_evidence=AK242260 (DDBJ%2C Secondary hit);ORF_evidence=Q5EFA4 (UniProt);Oryzabase=15140;TENOR=Os05t0328901-00;KEGG=Os05t0328901-00
Chr05	irgsp1_rep	five_prime_UTR	15333034	15333091	.	+	.	Parent=Os05t0328901-00
Chr05	irgsp1_rep	CDS	15333092	15333406	.	+	0	Parent=Os05t0328901-00
Chr05	irgsp1_rep	three_prime_UTR	15333407	15333656	.	+	.	Parent=Os05t0328901-00
Chr05	irgsp1_rep	mRNA	15335604	15336211	.	+	.	ID=Os05t0329001-00;Name=Os05t0329001-00;Locus_id=Os05g0329001;Oryzabase Gene Symbol Synonym(s)=pro13b.10;Note=Similar to Prolamin.;Transcript_evidence=AF042201 (DDBJ%2C Secondary hit);ORF_evidence=Q5EFA4 (UniProt);Oryzabase=22822;Expression=AF042201;TENOR=Os05t0329001-00;KEGG=Os05t0329001-00
Chr05	irgsp1_rep	five_prime_UTR	15335604	15335652	.	+	.	Parent=Os05t0329001-00
Chr05	irgsp1_rep	CDS	15335653	15335967	.	+	0	Parent=Os05t0329001-00
Chr05	irgsp1_rep	three_prime_UTR	15335968	15336211	.	+	.	Parent=Os05t0329001-00
Chr05	irgsp1_rep	mRNA	15338156	15338778	.	+	.	ID=Os05t0329100-01;Name=Os05t0329100-01;Locus_id=Os05g0329100;Oryzabase Gene Symbol Synonym(s)=CysP13%2C CpP13%2C PG5a%2C Prol-06%2C pro13b.11%2C pro13b.12%2C PROLM9;Oryzabase Gene Name Synonym(s)=cysteine-poor 13kDa prolamin%2C Cys-poor 13-kDa prolamin%2C Prolamin 9;Note=Prolamin.;Transcript_evidence=AK242260 (DDBJ%2C Best hit);ORF_evidence=Q5EFA4 (UniProt);InterPro=Bifunctional trypsin/alpha-amylase inhibitor (IPR013771);NIAS_FLcDNA=J075184G19;Oryzabase=9285;TENOR=Os05t0329100-01;KEGG=Os05t0329100-01
Chr05	irgsp1_rep	five_prime_UTR	15338156	15338213	.	+	.	Parent=Os05t0329100-01
Chr05	irgsp1_rep	CDS	15338214	15338666	.	+	0	Parent=Os05t0329100-01
Chr05	irgsp1_rep	three_prime_UTR	15338667	15338778	.	+	.	Parent=Os05t0329100-01
Chr05	irgsp1_rep	mRNA	15338182	15338772	.	+	.	ID=Os05t0329100-02;Name=Os05t0329100-02;Locus_id=Os05g0329100;Oryzabase Gene Symbol Synonym(s)=CysP13%2C CpP13%2C PG5a%2C Prol-06%2C pro13b.11%2C pro13b.12%2C PROLM9;Oryzabase Gene Name Synonym(s)=cysteine-poor 13kDa prolamin%2C Cys-poor 13-kDa prolamin%2C Prolamin 9;Note=Prolamin.;Transcript_evidence=AK242910 (DDBJ%2C Best hit);ORF_evidence=Q5EFA4 (UniProt);InterPro=Bifunctional trypsin/alpha-amylase inhibitor (IPR013771);NIAS_FLcDNA=J090083A17;Oryzabase=9285;TENOR=Os05t0329100-02;KEGG=Os05t0329100-02
Chr05	irgsp1_rep	five_prime_UTR	15338182	15338213	.	+	.	Parent=Os05t0329100-02
Chr05	irgsp1_rep	CDS	15338214	15338666	.	+	0	Parent=Os05t0329100-02
Chr05	irgsp1_rep	three_prime_UTR	15338667	15338772	.	+	.	Parent=Os05t0329100-02
Chr05	irgsp1_rep	mRNA	15398470	15399092	.	+	.	ID=Os05t0329200-00;Name=Os05t0329200-00;Locus_id=Os05g0329200;Oryzabase Gene Symbol Synonym(s)=Prol-10%2C pro13b.16%2C PROLM12;Oryzabase Gene Name Synonym(s)=Prolamin 12;Note=Similar to Prolamin.;Transcript_evidence=AK242260 (DDBJ%2C Secondary hit);ORF_evidence=Q5EFA4 (UniProt);InterPro=Bifunctional trypsin/alpha-amylase inhibitor (IPR013771);Oryzabase=15143;TENOR=Os05t0329200-00;KEGG=Os05t0329200-00
Chr05	irgsp1_rep	five_prime_UTR	15398470	15398647	.	+	.	Parent=Os05t0329200-00
Chr05	irgsp1_rep	CDS	15398648	15398980	.	+	0	Parent=Os05t0329200-00
Chr05	irgsp1_rep	three_prime_UTR	15398981	15399092	.	+	.	Parent=Os05t0329200-00
Chr05	irgsp1_rep	mRNA	15340717	15341339	.	+	.	ID=Os05t0329300-01;Name=Os05t0329300-01;Locus_id=Os05g0329300;Note=Prolamin.;Transcript_evidence=AK242260 (DDBJ%2C Best hit);ORF_evidence=Q5EFA4 (UniProt);InterPro=Bifunctional trypsin/alpha-amylase inhibitor (IPR013771);NIAS_FLcDNA=J075184G19;TENOR=Os05t0329300-01
Chr05	irgsp1_rep	five_prime_UTR	15340717	15340774	.	+	.	Parent=Os05t0329300-01
Chr05	irgsp1_rep	CDS	15340775	15341227	.	+	0	Parent=Os05t0329300-01
Chr05	irgsp1_rep	three_prime_UTR	15341228	15341339	.	+	.	Parent=Os05t0329300-01
Chr05	irgsp1_rep	mRNA	15340743	15341333	.	+	.	ID=Os05t0329300-02;Name=Os05t0329300-02;Locus_id=Os05g0329300;Note=Prolamin.;Transcript_evidence=AK242910 (DDBJ%2C Best hit);ORF_evidence=Q5EFA4 (UniProt);InterPro=Bifunctional trypsin/alpha-amylase inhibitor (IPR013771);NIAS_FLcDNA=J090083A17;TENOR=Os05t0329300-02
Chr05	irgsp1_rep	five_prime_UTR	15340743	15340774	.	+	.	Parent=Os05t0329300-02
Chr05	irgsp1_rep	CDS	15340775	15341227	.	+	0	Parent=Os05t0329300-02
Chr05	irgsp1_rep	three_prime_UTR	15341228	15341333	.	+	.	Parent=Os05t0329300-02
Chr05	irgsp1_rep	mRNA	15343298	15343900	.	+	.	ID=Os05t0329350-00;Name=Os05t0329350-00;Locus_id=Os05g0329350;Oryzabase Gene Symbol Synonym(s)=pro13b.13;Note=Prolamin.;Transcript_evidence=EF122440 (DDBJ%2C Best hit);ORF_evidence=Q5EFA4 (UniProt);InterPro=Bifunctional trypsin/alpha-amylase inhibitor (IPR013771);Oryzabase=19811;TENOR=Os05t0329350-00;KEGG=Os05t0329350-00
Chr05	irgsp1_rep	five_prime_UTR	15343298	15343335	.	+	.	Parent=Os05t0329350-00
Chr05	irgsp1_rep	CDS	15343336	15343788	.	+	0	Parent=Os05t0329350-00
Chr05	irgsp1_rep	three_prime_UTR	15343789	15343900	.	+	.	Parent=Os05t0329350-00
Chr05	irgsp1_rep	mRNA	15372571	15382902	.	+	.	ID=Os05t0329400-00;Name=Os05t0329400-00;Locus_id=Os05g0329400;Oryzabase Gene Symbol Synonym(s)=PG5b%2C Prol-08%2C pro13b.14%2C Prol-09%2C Prol-27;Note=Similar to Prolamin.;Transcript_evidence=AK242260 (DDBJ%2C Secondary hit);ORF_evidence=Q5EFA4 (UniProt);Oryzabase=14471,15142;TENOR=Os05t0329400-00;KEGG=Os05t0329400-00
Chr05	irgsp1_rep	five_prime_UTR	15372571	15372628	.	+	.	Parent=Os05t0329400-00
Chr05	irgsp1_rep	CDS	15372629	15373032	.	+	0	Parent=Os05t0329400-00
Chr05	irgsp1_rep	CDS	15382743	15382800	.	+	1	Parent=Os05t0329400-00
Chr05	irgsp1_rep	three_prime_UTR	15382801	15382902	.	+	.	Parent=Os05t0329400-00
Chr05	irgsp1_rep	mRNA	15384864	15385454	.	+	.	ID=Os05t0329700-01;Name=Os05t0329700-01;Locus_id=Os05g0329700;Oryzabase Gene Symbol Synonym(s)=pro13b.15%2C PROLM11;Oryzabase Gene Name Synonym(s)=Prolamin 11;Note=Similar to Prolamin.;Transcript_evidence=AK242910 (DDBJ%2C Best hit);ORF_evidence=Q5EFA4 (UniProt);InterPro=Bifunctional trypsin/alpha-amylase inhibitor (IPR013771);NIAS_FLcDNA=J090083A17;Oryzabase=19812;TENOR=Os05t0329700-01;KEGG=Os05t0329700-01
Chr05	irgsp1_rep	five_prime_UTR	15384864	15384895	.	+	.	Parent=Os05t0329700-01
Chr05	irgsp1_rep	CDS	15384896	15385348	.	+	0	Parent=Os05t0329700-01
Chr05	irgsp1_rep	three_prime_UTR	15385349	15385454	.	+	.	Parent=Os05t0329700-01
Chr05	irgsp1_rep	mRNA	15401030	15458677	.	+	.	ID=Os05t0330150-00;Name=Os05t0330150-00;Locus_id=Os05g0330150;Oryzabase Gene Symbol Synonym(s)=Prol-11%2C pro13b.17%2C PROLM13;Oryzabase Gene Name Synonym(s)=Prolamin 13;Note=Similar to Prolamin.;Transcript_evidence=AK242260 (DDBJ%2C Secondary hit);ORF_evidence=Q5EFA4 (UniProt);InterPro=Bifunctional trypsin/alpha-amylase inhibitor (IPR013771);Oryzabase=15144;TENOR=Os05t0330150-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	15401030	15401087	.	+	.	Parent=Os05t0330150-00
Chr05	irgsp1_rep	CDS	15401088	15401473	.	+	0	Parent=Os05t0330150-00
Chr05	irgsp1_rep	CDS	15458500	15458566	.	+	1	Parent=Os05t0330150-00
Chr05	irgsp1_rep	three_prime_UTR	15458567	15458677	.	+	.	Parent=Os05t0330150-00
Chr05	irgsp1_rep	mRNA	15464490	15465048	.	+	.	ID=Os05t0330600-00;Name=Os05t0330600-00;Locus_id=Os05g0330600;Oryzabase Gene Symbol Synonym(s)=Prol-12%2C pro13b.18;Note=Similar to Prolamin.;Transcript_evidence=FJ940201 (DDBJ%2C Best hit);ORF_evidence=Q5EFA4 (UniProt);InterPro=Bifunctional trypsin/alpha-amylase inhibitor (IPR013771);Oryzabase=15145;TENOR=Os05t0330600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	15464490	15464512	.	+	.	Parent=Os05t0330600-00
Chr05	irgsp1_rep	CDS	15464513	15464965	.	+	0	Parent=Os05t0330600-00
Chr05	irgsp1_rep	three_prime_UTR	15464966	15465048	.	+	.	Parent=Os05t0330600-00
Chr05	irgsp1_rep	mRNA	15471115	15471859	.	-	.	ID=Os05t0330700-01;Name=Os05t0330700-01;Locus_id=Os05g0330700;Note=Hypothetical gene.;Transcript_evidence=AK063091 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-111-B02;Expression=AK063091;TENOR=Os05t0330700-01;KEGG=Os05t0330700-01
Chr05	irgsp1_rep	CDS	15471614	15471859	.	-	0	Parent=Os05t0330700-01
Chr05	irgsp1_rep	three_prime_UTR	15471529	15471613	.	-	.	Parent=Os05t0330700-01
Chr05	irgsp1_rep	three_prime_UTR	15471115	15471354	.	-	.	Parent=Os05t0330700-01
Chr05	irgsp1_rep	mRNA	15471101	15471752	.	-	.	ID=Os05t0330700-02;Name=Os05t0330700-02;Locus_id=Os05g0330700;Note=Conserved hypothetical protein.;Transcript_evidence=AK062425 (DDBJ%2C Best hit);ORF_evidence=B8AWN4 (UniProt);NIAS_FLcDNA=001-102-H01;Expression=AK062425;TENOR=Os05t0330700-02;KEGG=Os05t0330700-02
Chr05	irgsp1_rep	five_prime_UTR	15471589	15471752	.	-	.	Parent=Os05t0330700-02
Chr05	irgsp1_rep	CDS	15471337	15471588	.	-	0	Parent=Os05t0330700-02
Chr05	irgsp1_rep	three_prime_UTR	15471101	15471336	.	-	.	Parent=Os05t0330700-02
Chr05	irgsp1_rep	mRNA	15482327	15488104	.	-	.	ID=Os05t0331200-01;Name=Os05t0331200-01;Locus_id=Os05g0331200;CGSNL Gene Symbol=NDA;CGSNL Gene Name=NAD(P) H DEHYDROGENASE A;Oryzabase Gene Symbol Synonym(s)=OsNDA;Oryzabase Gene Name Synonym(s)=NAD(P) H dehydrogenase A;Note=Similar to External rotenone-insensitive NADPH dehydrogenase.;Transcript_evidence=AK100884 (DDBJ%2C Best hit);ORF_evidence=Q2HTY1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=EF-hand-like domain (IPR011992),FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR013027),EF-HAND 2 (IPR018249),Pyridine nucleotide-disulphide oxidoreductase%2C FAD/NAD(P)-binding domain (IPR023753);NIAS_FLcDNA=J023127O13;Oryzabase=23302;Expression=AK100884;TENOR=Os05t0331200-01;KEGG=Os05t0331200-01 (EC:1.6.99.3)
Chr05	irgsp1_rep	five_prime_UTR	15488075	15488104	.	-	.	Parent=Os05t0331200-01
Chr05	irgsp1_rep	CDS	15487977	15488074	.	-	0	Parent=Os05t0331200-01
Chr05	irgsp1_rep	CDS	15486241	15486499	.	-	1	Parent=Os05t0331200-01
Chr05	irgsp1_rep	CDS	15485942	15486136	.	-	0	Parent=Os05t0331200-01
Chr05	irgsp1_rep	CDS	15485391	15485641	.	-	0	Parent=Os05t0331200-01
Chr05	irgsp1_rep	CDS	15484948	15485164	.	-	1	Parent=Os05t0331200-01
Chr05	irgsp1_rep	CDS	15484758	15484862	.	-	0	Parent=Os05t0331200-01
Chr05	irgsp1_rep	CDS	15483871	15484143	.	-	0	Parent=Os05t0331200-01
Chr05	irgsp1_rep	CDS	15483259	15483380	.	-	0	Parent=Os05t0331200-01
Chr05	irgsp1_rep	CDS	15482826	15482945	.	-	1	Parent=Os05t0331200-01
Chr05	irgsp1_rep	CDS	15482619	15482706	.	-	1	Parent=Os05t0331200-01
Chr05	irgsp1_rep	three_prime_UTR	15482327	15482618	.	-	.	Parent=Os05t0331200-01
Chr05	irgsp1_rep	mRNA	15502435	15503013	.	-	.	ID=Os05t0331366-00;Name=Os05t0331366-00;Locus_id=Os05g0331366;Oryzabase Gene Symbol Synonym(s)=OsEnS-76%2C pro13b.19;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 76;Note=Similar to Prolamin.;Transcript_evidence=AK242154 (DDBJ%2C Secondary hit);ORF_evidence=Q5EFA4 (UniProt);InterPro=Bifunctional trypsin/alpha-amylase inhibitor (IPR013771);Oryzabase=18394;TENOR=Os05t0331366-00;KEGG=Os05t0331366-00
Chr05	irgsp1_rep	five_prime_UTR	15502859	15503013	.	-	.	Parent=Os05t0331366-00
Chr05	irgsp1_rep	CDS	15502493	15502858	.	-	0	Parent=Os05t0331366-00
Chr05	irgsp1_rep	three_prime_UTR	15502435	15502492	.	-	.	Parent=Os05t0331366-00
Chr05	irgsp1_rep	mRNA	15512583	15513163	.	-	.	ID=Os05t0331532-01;Name=Os05t0331532-01;Locus_id=Os05g0331532;Oryzabase Gene Symbol Synonym(s)=pro13b.20;Note=Similar to Prolamin.;Transcript_evidence=AK242154 (DDBJ%2C Best hit);ORF_evidence=Q43603 (UniProt);InterPro=Bifunctional trypsin/alpha-amylase inhibitor (IPR013771);NIAS_FLcDNA=J075154I15;Oryzabase=19813;TENOR=Os05t0331532-01;KEGG=Os05t0331532-01
Chr05	irgsp1_rep	five_prime_UTR	15513104	15513163	.	-	.	Parent=Os05t0331532-01
Chr05	irgsp1_rep	CDS	15512642	15513103	.	-	0	Parent=Os05t0331532-01
Chr05	irgsp1_rep	three_prime_UTR	15512583	15512641	.	-	.	Parent=Os05t0331532-01
Chr05	irgsp1_rep	mRNA	15524447	15524995	.	-	.	ID=Os05t0331800-01;Name=Os05t0331800-01;Locus_id=Os05g0331800;Oryzabase Gene Symbol Synonym(s)=Prol-14%2C pro13b.21%2C PROLM17;Note=Similar to Prolamin.;Transcript_evidence=AK242595 (DDBJ%2C Best hit);ORF_evidence=Q5EFA4 (UniProt);InterPro=Bifunctional trypsin/alpha-amylase inhibitor (IPR013771);NIAS_FLcDNA=J090012P20;Oryzabase=15148;TENOR=Os05t0331800-01;KEGG=Os05t0331800-01
Chr05	irgsp1_rep	five_prime_UTR	15524937	15524995	.	-	.	Parent=Os05t0331800-01
Chr05	irgsp1_rep	CDS	15524475	15524936	.	-	0	Parent=Os05t0331800-01
Chr05	irgsp1_rep	three_prime_UTR	15524447	15524474	.	-	.	Parent=Os05t0331800-01
Chr05	irgsp1_rep	mRNA	15527432	15530968	.	+	.	ID=Os05t0331900-01;Name=Os05t0331900-01;Locus_id=Os05g0331900;Note=Conserved hypothetical protein.;Transcript_evidence=AK288656 (DDBJ%2C Best hit);ORF_evidence=NP_001176692.1 (RefSeq);NIAS_FLcDNA=J090057F14;TENOR=Os05t0331900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	15527432	15528534	.	+	.	Parent=Os05t0331900-01
Chr05	irgsp1_rep	CDS	15528535	15528639	.	+	0	Parent=Os05t0331900-01
Chr05	irgsp1_rep	three_prime_UTR	15528640	15530968	.	+	.	Parent=Os05t0331900-01
Chr05	irgsp1_rep	mRNA	15530286	15530854	.	-	.	ID=Os05t0332000-01;Name=Os05t0332000-01;Locus_id=Os05g0332000;Oryzabase Gene Symbol Synonym(s)=Prol-15%2C pro13b.22;Note=Similar to Prolamin precursor.;Transcript_evidence=AK242285 (DDBJ%2C Best hit);ORF_evidence=Q43603 (UniProt);InterPro=Bifunctional trypsin/alpha-amylase inhibitor (IPR013771);NIAS_FLcDNA=J075189K21;Oryzabase=15149;TENOR=Os05t0332000-01;KEGG=Os05t0332000-01
Chr05	irgsp1_rep	five_prime_UTR	15530807	15530854	.	-	.	Parent=Os05t0332000-01
Chr05	irgsp1_rep	CDS	15530345	15530806	.	-	0	Parent=Os05t0332000-01
Chr05	irgsp1_rep	three_prime_UTR	15530286	15530344	.	-	.	Parent=Os05t0332000-01
Chr05	irgsp1_rep	mRNA	15553257	15554363	.	-	.	ID=Os05t0332250-00;Name=Os05t0332250-00;Locus_id=Os05g0332250;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8AWN6 (UniProt);TENOR=Os05t0332250-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	15553758	15554363	.	-	0	Parent=Os05t0332250-00
Chr05	irgsp1_rep	CDS	15553257	15553508	.	-	0	Parent=Os05t0332250-00
Chr05	irgsp1_rep	mRNA	15556085	15560404	.	+	.	ID=Os05t0332300-01;Name=Os05t0332300-01;Locus_id=Os05g0332300;CGSNL Gene Symbol=CIPK18;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 18;Oryzabase Gene Symbol Synonym(s)=OsCIPK18;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 18;Note=Similar to CBL-interacting protein kinase 2.;Transcript_evidence=AK101355 (DDBJ%2C Best hit);ORF_evidence=Q5W736 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),NAF domain (IPR004041),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),NAF/FISL domain (IPR018451),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033034P20;Oryzabase=7405;Expression=AK101355;TENOR=Os05t0332300-01;KEGG=Os05t0332300-01 (EC:2.7.11.11)
Chr05	irgsp1_rep	five_prime_UTR	15556085	15556301	.	+	.	Parent=Os05t0332300-01
Chr05	irgsp1_rep	five_prime_UTR	15558542	15558842	.	+	.	Parent=Os05t0332300-01
Chr05	irgsp1_rep	CDS	15558843	15560216	.	+	0	Parent=Os05t0332300-01
Chr05	irgsp1_rep	three_prime_UTR	15560217	15560404	.	+	.	Parent=Os05t0332300-01
Chr05	irgsp1_rep	mRNA	15559020	15560378	.	+	.	ID=Os05t0332300-02;Name=Os05t0332300-02;Locus_id=Os05g0332300;CGSNL Gene Symbol=CIPK18;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 18;Oryzabase Gene Symbol Synonym(s)=OsCIPK18;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 18;Note=Similar to cDNA clone:J033034P20%2C full insert sequence.;Transcript_evidence=AK058763 (DDBJ%2C Best hit);ORF_evidence=B3GM03 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),NAF domain (IPR004041),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),NAF/FISL domain (IPR018451),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-001-C10;Oryzabase=7405;Expression=AK058763;TENOR=Os05t0332300-02;KEGG=Os05t0332300-02 (EC:2.7.11.11)
Chr05	irgsp1_rep	CDS	15559020	15560216	.	+	0	Parent=Os05t0332300-02
Chr05	irgsp1_rep	three_prime_UTR	15560217	15560378	.	+	.	Parent=Os05t0332300-02
Chr05	irgsp1_rep	mRNA	15574253	15575640	.	-	.	ID=Os05t0332600-01;Name=Os05t0332600-01;Locus_id=Os05g0332600;Note=Xanthine/uracil/vitamin C permease family protein.;Transcript_evidence=AK061486 (DDBJ%2C Best hit);ORF_evidence=NP_566384.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Xanthine/uracil/vitamin C permease (IPR006043);NIAS_FLcDNA=006-309-A03;Expression=AK061486;TENOR=Os05t0332600-01;KEGG=Os05t0332600-01
Chr05	irgsp1_rep	CDS	15574399	15575640	.	-	0	Parent=Os05t0332600-01
Chr05	irgsp1_rep	three_prime_UTR	15574253	15574398	.	-	.	Parent=Os05t0332600-01
Chr05	irgsp1_rep	mRNA	15574266	15575577	.	-	.	ID=Os05t0332600-02;Name=Os05t0332600-02;Locus_id=Os05g0332600;Note=Similar to predicted protein.;Transcript_evidence=AK098926 (DDBJ%2C Best hit);ORF_evidence=NP_566384.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Xanthine/uracil/vitamin C permease (IPR006043);NIAS_FLcDNA=J013004J21;Expression=AK098926;TENOR=Os05t0332600-02;KEGG=Os05t0332600-02
Chr05	irgsp1_rep	CDS	15574399	15575577	.	-	0	Parent=Os05t0332600-02
Chr05	irgsp1_rep	three_prime_UTR	15574266	15574398	.	-	.	Parent=Os05t0332600-02
Chr05	irgsp1_rep	mRNA	15574497	15575982	.	+	.	ID=Os05t0332801-00;Name=Os05t0332801-00;Locus_id=Os05g0332801;Note=Hypothetical protein.;Transcript_evidence=tplb0036j11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0332801-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	15574497	15575197	.	+	.	Parent=Os05t0332801-00
Chr05	irgsp1_rep	CDS	15575198	15575266	.	+	0	Parent=Os05t0332801-00
Chr05	irgsp1_rep	CDS	15575332	15575982	.	+	0	Parent=Os05t0332801-00
Chr05	irgsp1_rep	mRNA	15590949	15591872	.	-	.	ID=Os05t0333000-01;Name=Os05t0333000-01;Locus_id=Os05g0333000;Note=Conserved hypothetical protein.;Transcript_evidence=AK108155 (DDBJ%2C Best hit);ORF_evidence=B9FGR2 (UniProt);NIAS_FLcDNA=002-139-G06;TENOR=Os05t0333000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	15591657	15591872	.	-	.	Parent=Os05t0333000-01
Chr05	irgsp1_rep	CDS	15591444	15591656	.	-	0	Parent=Os05t0333000-01
Chr05	irgsp1_rep	three_prime_UTR	15590949	15591443	.	-	.	Parent=Os05t0333000-01
Chr05	irgsp1_rep	mRNA	15594256	15595666	.	-	.	ID=Os05t0333100-00;Name=Os05t0333100-00;Locus_id=Os05g0333100;Note=Similar to CBL-interacting protein kinase 22.;Transcript_evidence=FJ901222 (DDBJ);ORF_evidence=Q5KQF5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os05t0333100-00;KEGG=Os05t0333100-00 (EC:2.7.11.1)
Chr05	irgsp1_rep	CDS	15594683	15595666	.	-	0	Parent=Os05t0333100-00
Chr05	irgsp1_rep	three_prime_UTR	15594256	15594682	.	-	.	Parent=Os05t0333100-00
Chr05	irgsp1_rep	mRNA	15602264	15609433	.	+	.	ID=Os05t0333150-00;Name=Os05t0333150-00;Locus_id=Os05g0333150;Note=Hypothetical protein.;Transcript_evidence=AK372725 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0333150-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	15602264	15602412	.	+	.	Parent=Os05t0333150-00
Chr05	irgsp1_rep	five_prime_UTR	15602492	15602524	.	+	.	Parent=Os05t0333150-00
Chr05	irgsp1_rep	CDS	15602525	15602578	.	+	0	Parent=Os05t0333150-00
Chr05	irgsp1_rep	CDS	15602964	15603148	.	+	0	Parent=Os05t0333150-00
Chr05	irgsp1_rep	CDS	15604021	15604033	.	+	1	Parent=Os05t0333150-00
Chr05	irgsp1_rep	three_prime_UTR	15604034	15604226	.	+	.	Parent=Os05t0333150-00
Chr05	irgsp1_rep	three_prime_UTR	15606624	15606770	.	+	.	Parent=Os05t0333150-00
Chr05	irgsp1_rep	three_prime_UTR	15608614	15608906	.	+	.	Parent=Os05t0333150-00
Chr05	irgsp1_rep	three_prime_UTR	15609319	15609433	.	+	.	Parent=Os05t0333150-00
Chr05	irgsp1_rep	mRNA	15609569	15613588	.	-	.	ID=Os05t0333200-01;Name=Os05t0333200-01;Locus_id=Os05g0333200;RAP-DB Gene Symbol Synonym(s)=D1%2C RGA1;RAP-DB Gene Name Synonym(s)=Dwarf 1%2C Daikoku dwarf%2C rice G protein alpha subunit 1;CGSNL Gene Symbol=D1;CGSNL Gene Name=DAIKOKU DWARF;Oryzabase Gene Symbol Synonym(s)=d1%2C GPA1%2C GA1%2C RGA1%2C dwf1%2C XA7%2C RGA%2C D1/RGA1%2C D89;Oryzabase Gene Name Synonym(s)=daikoku dwarf%2C XANTHOMONAS CAMPESTRIS PV. ORYZAE RESISTANCE 7%2C dwarf-1%2C Guanine nucleotide-binding protein alpha-1 subunit%2C GP-alpha-1%2C Protein Dwarf1%2C G-protein alpha subunit%2C GP-alpha-1%2C G-protein alpha subunit 1%2C dwarf69%2C dwarf 69%2C GTP binding protein alpha-subunit%2C dwarf 89%2C rice G protein a subunit 1%2C G protein a subunit 1;Note=&alpha%3B-subunit of GTP-binding protein%2C Signal transduction involved in morphogenesis%2C Gibberellin signal transduction%2C R gene-mediated disease resistance%2C Brassinosteroid (BR) response;Transcript_evidence=D38232,L28001 (IR36);ORF_evidence=Q0DJ33;GO=Biological Process: signal transduction (GO:0007165),Biological Process: G-protein coupled receptor signaling pathway (GO:0007186),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525),Molecular Function: guanyl nucleotide binding (GO:0019001),Molecular Function: G-protein beta/gamma-subunit complex binding (GO:0031683);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),G protein alpha subunit%2C helical insertion (IPR011025),Guanine nucleotide binding protein (G-protein)%2C alpha subunit (IPR001019),Plant G-protein%2C alpha subunit (IPR002976);Manual Curation=September 5%2C 2018;Literature_PMID=17117160,12237405,10468600,10377457,7766894;Oryzabase=673;Expression=L28001;TENOR=Os05t0333200-00;KEGG=Os05t0333200-00
Chr05	irgsp1_rep	five_prime_UTR	15613484	15613588	.	-	.	Parent=Os05t0333200-01
Chr05	irgsp1_rep	CDS	15613421	15613483	.	-	0	Parent=Os05t0333200-01
Chr05	irgsp1_rep	CDS	15613250	15613322	.	-	0	Parent=Os05t0333200-01
Chr05	irgsp1_rep	CDS	15612963	15613000	.	-	2	Parent=Os05t0333200-01
Chr05	irgsp1_rep	CDS	15612792	15612881	.	-	0	Parent=Os05t0333200-01
Chr05	irgsp1_rep	CDS	15612566	15612643	.	-	0	Parent=Os05t0333200-01
Chr05	irgsp1_rep	CDS	15611904	15612011	.	-	0	Parent=Os05t0333200-01
Chr05	irgsp1_rep	CDS	15611719	15611820	.	-	0	Parent=Os05t0333200-01
Chr05	irgsp1_rep	CDS	15610961	15611016	.	-	0	Parent=Os05t0333200-01
Chr05	irgsp1_rep	CDS	15610647	15610781	.	-	1	Parent=Os05t0333200-01
Chr05	irgsp1_rep	CDS	15610477	15610570	.	-	1	Parent=Os05t0333200-01
Chr05	irgsp1_rep	CDS	15610331	15610390	.	-	0	Parent=Os05t0333200-01
Chr05	irgsp1_rep	CDS	15610174	15610253	.	-	0	Parent=Os05t0333200-01
Chr05	irgsp1_rep	CDS	15609844	15610009	.	-	1	Parent=Os05t0333200-01
Chr05	irgsp1_rep	three_prime_UTR	15609569	15609843	.	-	.	Parent=Os05t0333200-01
Chr05	irgsp1_rep	mRNA	15617635	15624217	.	-	.	ID=Os05t0333500-01;Name=Os05t0333500-01;Locus_id=Os05g0333500;Oryzabase Gene Symbol Synonym(s)=OsDjA7%2C OsDnaJ;Oryzabase Gene Name Synonym(s)=DnaJ domain protein A7%2C rice DJA6 homolog;Note=Heat shock protein DnaJ family protein.;Transcript_evidence=AK243178 (DDBJ%2C Best hit);ORF_evidence=Q948S9 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: response to heat (GO:0009408),Molecular Function: ATP binding (GO:0005524),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C cysteine-rich domain (IPR001305),Heat shock protein DnaJ%2C N-terminal (IPR001623),Chaperone DnaJ%2C C-terminal (IPR002939),Heat shock protein DnaJ (IPR003095),HSP40/DnaJ peptide-binding (IPR008971),Chaperone DnaJ (IPR012724),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=J100036P15;Oryzabase=12144;TENOR=Os05t0333500-01
Chr05	irgsp1_rep	five_prime_UTR	15623876	15624217	.	-	.	Parent=Os05t0333500-01
Chr05	irgsp1_rep	five_prime_UTR	15620743	15620790	.	-	.	Parent=Os05t0333500-01
Chr05	irgsp1_rep	CDS	15620615	15620742	.	-	0	Parent=Os05t0333500-01
Chr05	irgsp1_rep	CDS	15620355	15620493	.	-	1	Parent=Os05t0333500-01
Chr05	irgsp1_rep	CDS	15620211	15620268	.	-	0	Parent=Os05t0333500-01
Chr05	irgsp1_rep	CDS	15619421	15619463	.	-	2	Parent=Os05t0333500-01
Chr05	irgsp1_rep	CDS	15619207	15619255	.	-	1	Parent=Os05t0333500-01
Chr05	irgsp1_rep	CDS	15619029	15619109	.	-	0	Parent=Os05t0333500-01
Chr05	irgsp1_rep	CDS	15618093	15618938	.	-	0	Parent=Os05t0333500-01
Chr05	irgsp1_rep	three_prime_UTR	15617635	15618092	.	-	.	Parent=Os05t0333500-01
Chr05	irgsp1_rep	mRNA	15617637	15624148	.	-	.	ID=Os05t0333500-02;Name=Os05t0333500-02;Locus_id=Os05g0333500;RAP-DB Gene Symbol Synonym(s)=OsDjA7%2C OsDnaJ%2C OsDjA7/8;RAP-DB Gene Name Synonym(s)=DnaJ domain protein A7%2C rice DJA6 homolog;Oryzabase Gene Symbol Synonym(s)=OsDjA7%2C OsDnaJ;Oryzabase Gene Name Synonym(s)=DnaJ domain protein A7%2C rice DJA6 homolog;Note=Heat shock protein DnaJ family protein%2C Chloroplast development and differentiation;Transcript_evidence=NM_001061762.1,AK101370;ORF_evidence=Q5W730;GO=Biological Process: protein folding (GO:0006457),Biological Process: response to heat (GO:0009408),Molecular Function: ATP binding (GO:0005524),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Chaperone DnaJ (IPR012724),DnaJ domain (IPR001623),HSP40/DnaJ peptide-binding (IPR008971),Chaperone DnaJ%2C C-terminal (IPR002939),Heat shock protein DnaJ%2C cysteine-rich domain (IPR001305),DnaJ domain%2C conserved site (IPR018253);NIAS_FLcDNA=J033035M17;Manual Curation=August 20%2C 2015;Literature_PMID=26210810,23160806;Oryzabase=12144;TENOR=Os05t0333500-02
Chr05	irgsp1_rep	five_prime_UTR	15623876	15624148	.	-	.	Parent=Os05t0333500-02
Chr05	irgsp1_rep	five_prime_UTR	15620743	15620790	.	-	.	Parent=Os05t0333500-02
Chr05	irgsp1_rep	CDS	15620615	15620742	.	-	0	Parent=Os05t0333500-02
Chr05	irgsp1_rep	CDS	15620355	15620493	.	-	1	Parent=Os05t0333500-02
Chr05	irgsp1_rep	CDS	15620211	15620268	.	-	0	Parent=Os05t0333500-02
Chr05	irgsp1_rep	CDS	15619421	15619463	.	-	2	Parent=Os05t0333500-02
Chr05	irgsp1_rep	CDS	15619207	15619255	.	-	1	Parent=Os05t0333500-02
Chr05	irgsp1_rep	CDS	15619029	15619109	.	-	0	Parent=Os05t0333500-02
Chr05	irgsp1_rep	CDS	15618093	15618938	.	-	0	Parent=Os05t0333500-02
Chr05	irgsp1_rep	three_prime_UTR	15617637	15618092	.	-	.	Parent=Os05t0333500-02
Chr05	irgsp1_rep	mRNA	15621427	15623123	.	-	.	ID=Os05t0333600-01;Name=Os05t0333600-01;Locus_id=Os05g0333600;Note=Conserved hypothetical protein.;Transcript_evidence=AK106242 (DDBJ%2C Best hit);ORF_evidence=NP_001174361.1 (RefSeq);NIAS_FLcDNA=002-100-C12;TENOR=Os05t0333600-01;KEGG=Os05t0333600-01
Chr05	irgsp1_rep	five_prime_UTR	15623011	15623123	.	-	.	Parent=Os05t0333600-01
Chr05	irgsp1_rep	CDS	15622609	15623010	.	-	0	Parent=Os05t0333600-01
Chr05	irgsp1_rep	three_prime_UTR	15621427	15622608	.	-	.	Parent=Os05t0333600-01
Chr05	irgsp1_rep	mRNA	15626472	15633024	.	-	.	ID=Os05t0334000-01;Name=Os05t0334000-01;Locus_id=Os05g0334000;Note=Heat shock protein DnaJ family protein.;Transcript_evidence=AK243178 (DDBJ%2C Best hit);ORF_evidence=Q948S9 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: response to heat (GO:0009408),Molecular Function: ATP binding (GO:0005524),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C cysteine-rich domain (IPR001305),Heat shock protein DnaJ%2C N-terminal (IPR001623),Chaperone DnaJ%2C C-terminal (IPR002939),Heat shock protein DnaJ (IPR003095),HSP40/DnaJ peptide-binding (IPR008971),Chaperone DnaJ (IPR012724),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=J100036P15;TENOR=Os05t0334000-01
Chr05	irgsp1_rep	five_prime_UTR	15632683	15633024	.	-	.	Parent=Os05t0334000-01
Chr05	irgsp1_rep	five_prime_UTR	15629580	15629627	.	-	.	Parent=Os05t0334000-01
Chr05	irgsp1_rep	CDS	15629452	15629579	.	-	0	Parent=Os05t0334000-01
Chr05	irgsp1_rep	CDS	15629192	15629330	.	-	1	Parent=Os05t0334000-01
Chr05	irgsp1_rep	CDS	15629048	15629105	.	-	0	Parent=Os05t0334000-01
Chr05	irgsp1_rep	CDS	15628258	15628300	.	-	2	Parent=Os05t0334000-01
Chr05	irgsp1_rep	CDS	15628044	15628092	.	-	1	Parent=Os05t0334000-01
Chr05	irgsp1_rep	CDS	15627866	15627946	.	-	0	Parent=Os05t0334000-01
Chr05	irgsp1_rep	CDS	15626930	15627775	.	-	0	Parent=Os05t0334000-01
Chr05	irgsp1_rep	three_prime_UTR	15626472	15626929	.	-	.	Parent=Os05t0334000-01
Chr05	irgsp1_rep	mRNA	15626474	15632955	.	-	.	ID=Os05t0334000-02;Name=Os05t0334000-02;Locus_id=Os05g0334000;Note=Heat shock protein DnaJ family protein.;Transcript_evidence=AK101370 (DDBJ%2C Best hit);ORF_evidence=Q948S9 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: response to heat (GO:0009408),Molecular Function: ATP binding (GO:0005524),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C cysteine-rich domain (IPR001305),Heat shock protein DnaJ%2C N-terminal (IPR001623),Chaperone DnaJ%2C C-terminal (IPR002939),Heat shock protein DnaJ (IPR003095),HSP40/DnaJ peptide-binding (IPR008971),Chaperone DnaJ (IPR012724),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=J033035M17;TENOR=Os05t0334000-02
Chr05	irgsp1_rep	five_prime_UTR	15632683	15632955	.	-	.	Parent=Os05t0334000-02
Chr05	irgsp1_rep	five_prime_UTR	15629580	15629627	.	-	.	Parent=Os05t0334000-02
Chr05	irgsp1_rep	CDS	15629452	15629579	.	-	0	Parent=Os05t0334000-02
Chr05	irgsp1_rep	CDS	15629192	15629330	.	-	1	Parent=Os05t0334000-02
Chr05	irgsp1_rep	CDS	15629048	15629105	.	-	0	Parent=Os05t0334000-02
Chr05	irgsp1_rep	CDS	15628258	15628300	.	-	2	Parent=Os05t0334000-02
Chr05	irgsp1_rep	CDS	15628044	15628092	.	-	1	Parent=Os05t0334000-02
Chr05	irgsp1_rep	CDS	15627866	15627946	.	-	0	Parent=Os05t0334000-02
Chr05	irgsp1_rep	CDS	15626930	15627775	.	-	0	Parent=Os05t0334000-02
Chr05	irgsp1_rep	three_prime_UTR	15626474	15626929	.	-	.	Parent=Os05t0334000-02
Chr05	irgsp1_rep	mRNA	15635377	15638517	.	-	.	ID=Os05t0334400-01;Name=Os05t0334400-01;Locus_id=Os05g0334400;RAP-DB Gene Symbol Synonym(s)=OsDjA8%2C OsDjA7/8;RAP-DB Gene Name Synonym(s)=DnaJ domain protein A8%2C rice DJA7 homolog;CGSNL Gene Symbol=DJA8;CGSNL Gene Name=DNAJ DOMAIN PROTEIN A8;Oryzabase Gene Symbol Synonym(s)=OsDjA8%2C DjA8;Oryzabase Gene Name Synonym(s)=DnaJ domain protein A8%2C rice DJA7 homolog;Note=Heat shock protein DnaJ family protein%2C Chloroplast development and differentiation;Transcript_evidence=NM_001061765.1;ORF_evidence=Q5W730;GO=Biological Process: protein folding (GO:0006457),Biological Process: response to heat (GO:0009408),Molecular Function: ATP binding (GO:0005524),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Chaperone DnaJ (IPR012724),DnaJ domain (IPR001623),HSP40/DnaJ peptide-binding (IPR008971),Chaperone DnaJ%2C C-terminal (IPR002939),Heat shock protein DnaJ%2C cysteine-rich domain (IPR001305),DnaJ domain%2C conserved site (IPR018253);Manual Curation=August 20%2C 2015;Literature_PMID=26210810,23160806;Oryzabase=12145;TENOR=Os05t0334400-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	15638468	15638517	.	-	.	Parent=Os05t0334400-01
Chr05	irgsp1_rep	CDS	15638340	15638467	.	-	0	Parent=Os05t0334400-01
Chr05	irgsp1_rep	CDS	15638080	15638218	.	-	1	Parent=Os05t0334400-01
Chr05	irgsp1_rep	CDS	15637936	15637993	.	-	0	Parent=Os05t0334400-01
Chr05	irgsp1_rep	CDS	15637146	15637188	.	-	2	Parent=Os05t0334400-01
Chr05	irgsp1_rep	CDS	15636932	15636980	.	-	1	Parent=Os05t0334400-01
Chr05	irgsp1_rep	CDS	15636754	15636834	.	-	0	Parent=Os05t0334400-01
Chr05	irgsp1_rep	CDS	15635818	15636663	.	-	0	Parent=Os05t0334400-01
Chr05	irgsp1_rep	three_prime_UTR	15635377	15635817	.	-	.	Parent=Os05t0334400-01
Chr05	irgsp1_rep	mRNA	15643309	15644732	.	-	.	ID=Os05t0334750-00;Name=Os05t0334750-00;Locus_id=Os05g0334750;CGSNL Gene Symbol=CIPK22;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 22;Oryzabase Gene Symbol Synonym(s)=OsCIPK22;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 22;Note=Similar to CBL-interacting protein kinase 22.;Transcript_evidence=FP091734 (DDBJ);ORF_evidence=Q5KQF5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),NAF domain (IPR004041),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),NAF/FISL domain (IPR018451);Oryzabase=7409;TENOR=Os05t0334750-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	15644665	15644732	.	-	.	Parent=Os05t0334750-00
Chr05	irgsp1_rep	CDS	15643309	15644664	.	-	0	Parent=Os05t0334750-00
Chr05	irgsp1_rep	mRNA	15656749	15662427	.	-	.	ID=Os05t0335100-01;Name=Os05t0335100-01;Locus_id=Os05g0335100;Note=Saposin-like domain containing protein.;Transcript_evidence=AK107763;ORF_evidence=Q5KQF4;NIAS_FLcDNA=002-133-A11;TENOR=Os05t0335100-00
Chr05	irgsp1_rep	five_prime_UTR	15662152	15662427	.	-	.	Parent=Os05t0335100-01
Chr05	irgsp1_rep	five_prime_UTR	15660345	15660349	.	-	.	Parent=Os05t0335100-01
Chr05	irgsp1_rep	CDS	15660266	15660344	.	-	0	Parent=Os05t0335100-01
Chr05	irgsp1_rep	CDS	15659479	15659660	.	-	2	Parent=Os05t0335100-01
Chr05	irgsp1_rep	CDS	15659173	15659370	.	-	0	Parent=Os05t0335100-01
Chr05	irgsp1_rep	CDS	15657277	15657336	.	-	0	Parent=Os05t0335100-01
Chr05	irgsp1_rep	CDS	15656924	15657076	.	-	0	Parent=Os05t0335100-01
Chr05	irgsp1_rep	three_prime_UTR	15656749	15656923	.	-	.	Parent=Os05t0335100-01
Chr05	irgsp1_rep	mRNA	15681937	15688716	.	-	.	ID=Os05t0335401-01;Name=Os05t0335401-01;Locus_id=Os05g0335401;Note=Similar to haloacid dehalogenase-like hydrolase family protein.;Transcript_evidence=AK111643 (DDBJ%2C Best hit);ORF_evidence=NP_568633.1 (RefSeq);GO=Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C catalyzing transmembrane movement of substances (GO:0016820);InterPro=ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C cation-transporting%2C domain N (IPR023306);NIAS_FLcDNA=J013124G07;TENOR=Os05t0335401-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	15687239	15688716	.	-	.	Parent=Os05t0335401-01
Chr05	irgsp1_rep	five_prime_UTR	15686950	15687113	.	-	.	Parent=Os05t0335401-01
Chr05	irgsp1_rep	five_prime_UTR	15686527	15686667	.	-	.	Parent=Os05t0335401-01
Chr05	irgsp1_rep	five_prime_UTR	15684428	15684503	.	-	.	Parent=Os05t0335401-01
Chr05	irgsp1_rep	five_prime_UTR	15684213	15684313	.	-	.	Parent=Os05t0335401-01
Chr05	irgsp1_rep	CDS	15684173	15684212	.	-	0	Parent=Os05t0335401-01
Chr05	irgsp1_rep	CDS	15683264	15683360	.	-	2	Parent=Os05t0335401-01
Chr05	irgsp1_rep	CDS	15683074	15683183	.	-	1	Parent=Os05t0335401-01
Chr05	irgsp1_rep	CDS	15682794	15682958	.	-	2	Parent=Os05t0335401-01
Chr05	irgsp1_rep	CDS	15682241	15682290	.	-	2	Parent=Os05t0335401-01
Chr05	irgsp1_rep	three_prime_UTR	15681937	15682240	.	-	.	Parent=Os05t0335401-01
Chr05	irgsp1_rep	mRNA	15682455	15688151	.	-	.	ID=Os05t0335401-02;Name=Os05t0335401-02;Locus_id=Os05g0335401;Note=Similar to haloacid dehalogenase-like hydrolase family protein.;Transcript_evidence=AK111657 (DDBJ%2C Best hit);ORF_evidence=NP_568633.1 (RefSeq);GO=Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C catalyzing transmembrane movement of substances (GO:0016820);InterPro=ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C cation-transporting%2C domain N (IPR023306);NIAS_FLcDNA=J013140J15;TENOR=Os05t0335401-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	15687239	15688151	.	-	.	Parent=Os05t0335401-02
Chr05	irgsp1_rep	five_prime_UTR	15686950	15687113	.	-	.	Parent=Os05t0335401-02
Chr05	irgsp1_rep	five_prime_UTR	15686527	15686667	.	-	.	Parent=Os05t0335401-02
Chr05	irgsp1_rep	five_prime_UTR	15684428	15684503	.	-	.	Parent=Os05t0335401-02
Chr05	irgsp1_rep	five_prime_UTR	15684213	15684313	.	-	.	Parent=Os05t0335401-02
Chr05	irgsp1_rep	CDS	15684173	15684212	.	-	0	Parent=Os05t0335401-02
Chr05	irgsp1_rep	CDS	15683264	15683360	.	-	2	Parent=Os05t0335401-02
Chr05	irgsp1_rep	CDS	15683074	15683183	.	-	1	Parent=Os05t0335401-02
Chr05	irgsp1_rep	CDS	15682753	15682958	.	-	2	Parent=Os05t0335401-02
Chr05	irgsp1_rep	three_prime_UTR	15682455	15682752	.	-	.	Parent=Os05t0335401-02
Chr05	irgsp1_rep	mRNA	15681979	15683362	.	-	.	ID=Os05t0335401-03;Name=Os05t0335401-03;Locus_id=Os05g0335401;Note=Similar to haloacid dehalogenase-like hydrolase family protein.;Transcript_evidence=AK111959 (DDBJ%2C Best hit);ORF_evidence=NP_568633.1 (RefSeq);NIAS_FLcDNA=001-030-C07;Expression=AK111959;TENOR=Os05t0335401-03;KEGG=Os05t0335401-03 (EC:3.6.3.1)
Chr05	irgsp1_rep	five_prime_UTR	15683362	15683362	.	-	.	Parent=Os05t0335401-03
Chr05	irgsp1_rep	CDS	15683264	15683361	.	-	0	Parent=Os05t0335401-03
Chr05	irgsp1_rep	CDS	15683099	15683183	.	-	1	Parent=Os05t0335401-03
Chr05	irgsp1_rep	CDS	15682869	15682958	.	-	0	Parent=Os05t0335401-03
Chr05	irgsp1_rep	three_prime_UTR	15682794	15682868	.	-	.	Parent=Os05t0335401-03
Chr05	irgsp1_rep	three_prime_UTR	15681979	15682290	.	-	.	Parent=Os05t0335401-03
Chr05	irgsp1_rep	mRNA	15698676	15699445	.	+	.	ID=Os05t0335500-00;Name=Os05t0335500-00;Locus_id=Os05g0335500;Note=Conserved hypothetical protein.;Transcript_evidence=FP098229 (DDBJ);ORF_evidence=NP_001055233.2 (RefSeq);TENOR=Os05t0335500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	15698676	15698770	.	+	.	Parent=Os05t0335500-00
Chr05	irgsp1_rep	CDS	15698771	15699445	.	+	0	Parent=Os05t0335500-00
Chr05	irgsp1_rep	mRNA	15709038	15710367	.	-	.	ID=Os05t0335800-01;Name=Os05t0335800-01;Locus_id=Os05g0335800;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=TGF-beta receptor%2C type I/II extracellular region family protein.;Transcript_evidence=AK108393 (DDBJ%2C Best hit);ORF_evidence=E4MY83 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=002-142-F07;Oryzabase=23659;Expression=AK108393;TENOR=Os05t0335800-01;KEGG=Os05t0335800-01
Chr05	irgsp1_rep	five_prime_UTR	15710071	15710367	.	-	.	Parent=Os05t0335800-01
Chr05	irgsp1_rep	CDS	15709222	15710070	.	-	0	Parent=Os05t0335800-01
Chr05	irgsp1_rep	three_prime_UTR	15709038	15709221	.	-	.	Parent=Os05t0335800-01
Chr05	irgsp1_rep	mRNA	15709282	15728922	.	+	.	ID=Os05t0336000-00;Name=Os05t0336000-00;Locus_id=Os05g0336000;Note=Hypothetical protein.;Transcript_evidence=tplb0038k08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0336000-00
Chr05	irgsp1_rep	CDS	15709282	15710710	.	+	0	Parent=Os05t0336000-00
Chr05	irgsp1_rep	CDS	15728698	15728717	.	+	2	Parent=Os05t0336000-00
Chr05	irgsp1_rep	three_prime_UTR	15728718	15728922	.	+	.	Parent=Os05t0336000-00
Chr05	irgsp1_rep	mRNA	15728409	15729123	.	-	.	ID=Os05t0336200-00;Name=Os05t0336200-00;Locus_id=Os05g0336200;Note=Similar to predicted protein.;Transcript_evidence=ab initio prediction;ORF_evidence=E4MY83 (UniProt);TENOR=Os05t0336200-00;KEGG=Os05t0336200-00
Chr05	irgsp1_rep	CDS	15729012	15729123	.	-	0	Parent=Os05t0336200-00
Chr05	irgsp1_rep	CDS	15728708	15728925	.	-	2	Parent=Os05t0336200-00
Chr05	irgsp1_rep	CDS	15728409	15728459	.	-	0	Parent=Os05t0336200-00
Chr05	irgsp1_rep	mRNA	15753065	15754783	.	-	.	ID=Os05t0337200-01;Name=Os05t0337200-01;Locus_id=Os05g0337200;Oryzabase Gene Symbol Synonym(s)=OsbHLH162%2C bHLH162;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 162;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=AK063202 (DDBJ%2C Best hit);ORF_evidence=B4FLH1 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=001-112-C09;Oryzabase=15433;Expression=AK063202;TENOR=Os05t0337200-01;KEGG=Os05t0337200-01
Chr05	irgsp1_rep	five_prime_UTR	15754715	15754783	.	-	.	Parent=Os05t0337200-01
Chr05	irgsp1_rep	CDS	15754637	15754714	.	-	0	Parent=Os05t0337200-01
Chr05	irgsp1_rep	CDS	15753689	15753817	.	-	0	Parent=Os05t0337200-01
Chr05	irgsp1_rep	CDS	15753414	15753584	.	-	0	Parent=Os05t0337200-01
Chr05	irgsp1_rep	CDS	15753190	15753273	.	-	0	Parent=Os05t0337200-01
Chr05	irgsp1_rep	three_prime_UTR	15753065	15753189	.	-	.	Parent=Os05t0337200-01
Chr05	irgsp1_rep	mRNA	15770656	15773664	.	-	.	ID=Os05t0337400-01;Name=Os05t0337400-01;Locus_id=Os05g0337400;Note=Similar to heavy-metal-associated domain-containing protein.;Transcript_evidence=AK287602 (DDBJ%2C Best hit);ORF_evidence=NP_568306.1 (RefSeq);NIAS_FLcDNA=J065053F18;TENOR=Os05t0337400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	15773618	15773664	.	-	.	Parent=Os05t0337400-01
Chr05	irgsp1_rep	CDS	15773348	15773617	.	-	0	Parent=Os05t0337400-01
Chr05	irgsp1_rep	CDS	15773145	15773204	.	-	0	Parent=Os05t0337400-01
Chr05	irgsp1_rep	CDS	15770910	15771074	.	-	0	Parent=Os05t0337400-01
Chr05	irgsp1_rep	three_prime_UTR	15770656	15770909	.	-	.	Parent=Os05t0337400-01
Chr05	irgsp1_rep	mRNA	15775700	15778750	.	-	.	ID=Os05t0337500-01;Name=Os05t0337500-01;Locus_id=Os05g0337500;Note=Hypothetical conserved gene.;Transcript_evidence=AK242264 (DDBJ%2C Best hit);ORF_evidence=NP_001174365.1 (RefSeq);NIAS_FLcDNA=J075185I03;TENOR=Os05t0337500-01;KEGG=Os05t0337500-01
Chr05	irgsp1_rep	five_prime_UTR	15778356	15778750	.	-	.	Parent=Os05t0337500-01
Chr05	irgsp1_rep	five_prime_UTR	15778184	15778247	.	-	.	Parent=Os05t0337500-01
Chr05	irgsp1_rep	five_prime_UTR	15777955	15777999	.	-	.	Parent=Os05t0337500-01
Chr05	irgsp1_rep	CDS	15777949	15777954	.	-	0	Parent=Os05t0337500-01
Chr05	irgsp1_rep	CDS	15777360	15777539	.	-	0	Parent=Os05t0337500-01
Chr05	irgsp1_rep	three_prime_UTR	15776785	15777359	.	-	.	Parent=Os05t0337500-01
Chr05	irgsp1_rep	three_prime_UTR	15775700	15776039	.	-	.	Parent=Os05t0337500-01
Chr05	irgsp1_rep	mRNA	15791610	15791828	.	-	.	ID=Os05t0338132-00;Name=Os05t0338132-00;Locus_id=Os05g0338132;Note=Non-protein coding transcript.;Transcript_evidence=EU942950 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0338132-00
Chr05	irgsp1_rep	exon	15791610	15791828	.	-	.	Parent=Os05t0338132-00
Chr05	irgsp1_rep	mRNA	15838073	15838290	.	+	.	ID=Os05t0338450-00;Name=Os05t0338450-00;Locus_id=Os05g0338450;Note=Non-protein coding transcript.;Transcript_evidence=EU942950 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0338450-00
Chr05	irgsp1_rep	exon	15838073	15838290	.	+	.	Parent=Os05t0338450-00
Chr05	irgsp1_rep	mRNA	15867456	15873587	.	+	.	ID=Os05t0338900-00;Name=Os05t0338900-00;Locus_id=Os05g0338900;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Oligopeptide transporter domain containing protein.;Transcript_evidence=CT836455 (DDBJ%2C Best hit);ORF_evidence=NP_001174367.1 (RefSeq);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);Oryzabase=23660;TENOR=Os05t0338900-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	15867456	15867505	.	+	.	Parent=Os05t0338900-00
Chr05	irgsp1_rep	five_prime_UTR	15872593	15872800	.	+	.	Parent=Os05t0338900-00
Chr05	irgsp1_rep	CDS	15872801	15873418	.	+	0	Parent=Os05t0338900-00
Chr05	irgsp1_rep	three_prime_UTR	15873419	15873587	.	+	.	Parent=Os05t0338900-00
Chr05	irgsp1_rep	mRNA	15866499	15866891	.	+	.	ID=Os05t0338933-00;Name=Os05t0338933-00;Locus_id=Os05g0338933;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Similar to proton-dependent oligopeptide transport (POT) family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5WMP3 (UniProt);InterPro=Major facilitator superfamily domain%2C general substrate transporter (IPR016196);Oryzabase=23660;TENOR=Os05t0338933-00;KEGG=Os05t0338933-00
Chr05	irgsp1_rep	CDS	15866499	15866891	.	+	0	Parent=Os05t0338933-00
Chr05	irgsp1_rep	mRNA	15873838	15880419	.	-	.	ID=Os05t0339000-01;Name=Os05t0339000-01;Locus_id=Os05g0339000;Note=VHS domain containing protein.;Transcript_evidence=AK243668 (DDBJ%2C Best hit);ORF_evidence=A2Y3C8 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Cellular Component: intracellular (GO:0005622);InterPro=VHS (IPR002014),GAT (IPR004152),ENTH/VHS (IPR008942),VHS subgroup (IPR018205);NIAS_FLcDNA=J100089K17;TENOR=Os05t0339000-01;KEGG=Os05t0339000-01
Chr05	irgsp1_rep	five_prime_UTR	15880283	15880419	.	-	.	Parent=Os05t0339000-01
Chr05	irgsp1_rep	CDS	15880176	15880282	.	-	0	Parent=Os05t0339000-01
Chr05	irgsp1_rep	CDS	15878743	15878821	.	-	1	Parent=Os05t0339000-01
Chr05	irgsp1_rep	CDS	15878556	15878654	.	-	0	Parent=Os05t0339000-01
Chr05	irgsp1_rep	CDS	15877653	15877766	.	-	0	Parent=Os05t0339000-01
Chr05	irgsp1_rep	CDS	15876616	15876785	.	-	0	Parent=Os05t0339000-01
Chr05	irgsp1_rep	CDS	15876451	15876532	.	-	1	Parent=Os05t0339000-01
Chr05	irgsp1_rep	CDS	15876157	15876242	.	-	0	Parent=Os05t0339000-01
Chr05	irgsp1_rep	CDS	15874957	15875214	.	-	1	Parent=Os05t0339000-01
Chr05	irgsp1_rep	CDS	15874075	15874873	.	-	1	Parent=Os05t0339000-01
Chr05	irgsp1_rep	three_prime_UTR	15873838	15874074	.	-	.	Parent=Os05t0339000-01
Chr05	irgsp1_rep	mRNA	15888702	15890429	.	+	.	ID=Os05t0339200-01;Name=Os05t0339200-01;Locus_id=Os05g0339200;Note=Tubby%2C C-terminal domain containing protein.;Transcript_evidence=AK111022 (DDBJ%2C Best hit);ORF_evidence=A2Y3D0 (UniProt);InterPro=Tubby%2C C-terminal (IPR000007),Protein of unknown function DUF567 (IPR007612);NIAS_FLcDNA=002-174-G11;Expression=AK111022;TENOR=Os05t0339200-01;KEGG=Os05t0339200-01
Chr05	irgsp1_rep	five_prime_UTR	15888702	15888787	.	+	.	Parent=Os05t0339200-01
Chr05	irgsp1_rep	CDS	15888788	15889030	.	+	0	Parent=Os05t0339200-01
Chr05	irgsp1_rep	CDS	15889839	15890051	.	+	0	Parent=Os05t0339200-01
Chr05	irgsp1_rep	CDS	15890150	15890275	.	+	0	Parent=Os05t0339200-01
Chr05	irgsp1_rep	three_prime_UTR	15890276	15890429	.	+	.	Parent=Os05t0339200-01
Chr05	irgsp1_rep	mRNA	15894885	15896386	.	-	.	ID=Os05t0339300-01;Name=Os05t0339300-01;Locus_id=Os05g0339300;Note=Conserved hypothetical protein.;Transcript_evidence=AK109898 (DDBJ%2C Best hit);ORF_evidence=B9FGZ0 (UniProt);NIAS_FLcDNA=002-149-F05;TENOR=Os05t0339300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	15895268	15896386	.	-	.	Parent=Os05t0339300-01
Chr05	irgsp1_rep	CDS	15894980	15895267	.	-	0	Parent=Os05t0339300-01
Chr05	irgsp1_rep	three_prime_UTR	15894885	15894979	.	-	.	Parent=Os05t0339300-01
Chr05	irgsp1_rep	mRNA	15931964	15933657	.	-	.	ID=Os05t0340000-01;Name=Os05t0340000-01;Locus_id=Os05g0340000;Note=Conserved hypothetical protein.;Transcript_evidence=AK241777 (DDBJ%2C Best hit);ORF_evidence=NP_001174368.1 (RefSeq);NIAS_FLcDNA=J065205P10;TENOR=Os05t0340000-01;KEGG=Os05t0340000-01
Chr05	irgsp1_rep	five_prime_UTR	15933657	15933657	.	-	.	Parent=Os05t0340000-01
Chr05	irgsp1_rep	CDS	15933192	15933656	.	-	0	Parent=Os05t0340000-01
Chr05	irgsp1_rep	three_prime_UTR	15931964	15933191	.	-	.	Parent=Os05t0340000-01
Chr05	irgsp1_rep	mRNA	15995515	15998427	.	+	.	ID=Os05t0341100-00;Name=Os05t0341100-00;Locus_id=Os05g0341100;Note=Glucoamylase%2C putatuve domain containing protein.;Transcript_evidence=AK376502 (DDBJ);ORF_evidence=Q5WMU0 (UniProt);InterPro=Glucoamylase%2C putatuve (IPR004314);TENOR=Os05t0341100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	15995515	15995530	.	+	.	Parent=Os05t0341100-00
Chr05	irgsp1_rep	CDS	15995531	15995674	.	+	0	Parent=Os05t0341100-00
Chr05	irgsp1_rep	CDS	15995753	15995839	.	+	0	Parent=Os05t0341100-00
Chr05	irgsp1_rep	CDS	15996174	15996356	.	+	0	Parent=Os05t0341100-00
Chr05	irgsp1_rep	CDS	15997093	15997290	.	+	0	Parent=Os05t0341100-00
Chr05	irgsp1_rep	CDS	15997429	15997575	.	+	0	Parent=Os05t0341100-00
Chr05	irgsp1_rep	CDS	15998056	15998427	.	+	0	Parent=Os05t0341100-00
Chr05	irgsp1_rep	mRNA	15998536	16011139	.	-	.	ID=Os05t0341300-01;Name=Os05t0341300-01;Locus_id=Os05g0341300;Note=Similar to guanine nucleotide-binding protein alpha-1 subunit.;Transcript_evidence=AK241716 (DDBJ%2C Best hit);ORF_evidence=E7EAU1 (UniProt);GO=Biological Process: protein ADP-ribosylation (GO:0006471),Biological Process: signal transduction (GO:0007165),Biological Process: G-protein coupled receptor protein signaling pathway (GO:0007186),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: GTP binding (GO:0005525),Molecular Function: guanyl nucleotide binding (GO:0019001);InterPro=Guanine nucleotide binding protein (G-protein)%2C alpha subunit (IPR001019),Plant G-protein%2C alpha subunit (IPR002976),G protein alpha subunit%2C helical insertion (IPR011025);NIAS_FLcDNA=J065197M12;TENOR=Os05t0341300-01;KEGG=Os05t0341300-01
Chr05	irgsp1_rep	five_prime_UTR	16010978	16011139	.	-	.	Parent=Os05t0341300-01
Chr05	irgsp1_rep	five_prime_UTR	16010301	16010473	.	-	.	Parent=Os05t0341300-01
Chr05	irgsp1_rep	five_prime_UTR	16010182	16010202	.	-	.	Parent=Os05t0341300-01
Chr05	irgsp1_rep	CDS	16010130	16010181	.	-	0	Parent=Os05t0341300-01
Chr05	irgsp1_rep	CDS	16009842	16009879	.	-	2	Parent=Os05t0341300-01
Chr05	irgsp1_rep	CDS	16009671	16009760	.	-	0	Parent=Os05t0341300-01
Chr05	irgsp1_rep	CDS	16009415	16009522	.	-	0	Parent=Os05t0341300-01
Chr05	irgsp1_rep	three_prime_UTR	16008783	16009414	.	-	.	Parent=Os05t0341300-01
Chr05	irgsp1_rep	three_prime_UTR	16008598	16008699	.	-	.	Parent=Os05t0341300-01
Chr05	irgsp1_rep	three_prime_UTR	16007218	16008009	.	-	.	Parent=Os05t0341300-01
Chr05	irgsp1_rep	three_prime_UTR	15999243	15999458	.	-	.	Parent=Os05t0341300-01
Chr05	irgsp1_rep	three_prime_UTR	15998536	15999059	.	-	.	Parent=Os05t0341300-01
Chr05	irgsp1_rep	mRNA	16014828	16018002	.	-	.	ID=Os05t0341450-01;Name=Os05t0341450-01;Locus_id=Os05g0341450;Note=Conserved hypothetical protein.;Transcript_evidence=AK288499 (DDBJ%2C Best hit);ORF_evidence=Q5W6Z2 (UniProt);NIAS_FLcDNA=J090041C09;TENOR=Os05t0341450-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	16017402	16018002	.	-	.	Parent=Os05t0341450-01
Chr05	irgsp1_rep	CDS	16017264	16017401	.	-	0	Parent=Os05t0341450-01
Chr05	irgsp1_rep	three_prime_UTR	16014828	16017263	.	-	.	Parent=Os05t0341450-01
Chr05	irgsp1_rep	mRNA	16019207	16023701	.	-	.	ID=Os05t0341600-01;Name=Os05t0341600-01;Locus_id=Os05g0341600;Oryzabase Gene Symbol Synonym(s)=OsRab5D1;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab5D1;Note=Similar to Ras-related protein Rab-21.;Transcript_evidence=AK111385 (DDBJ%2C Best hit);ORF_evidence=XP_002962436.1 (RefSeq);GO=Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225);NIAS_FLcDNA=002-182-B11;Oryzabase=11083;Expression=AK111385;TENOR=Os05t0341600-01;KEGG=Os05t0341600-01
Chr05	irgsp1_rep	five_prime_UTR	16023574	16023701	.	-	.	Parent=Os05t0341600-01
Chr05	irgsp1_rep	CDS	16023507	16023573	.	-	0	Parent=Os05t0341600-01
Chr05	irgsp1_rep	CDS	16021827	16021963	.	-	2	Parent=Os05t0341600-01
Chr05	irgsp1_rep	CDS	16020904	16020964	.	-	0	Parent=Os05t0341600-01
Chr05	irgsp1_rep	CDS	16020657	16020822	.	-	2	Parent=Os05t0341600-01
Chr05	irgsp1_rep	CDS	16020273	16020361	.	-	1	Parent=Os05t0341600-01
Chr05	irgsp1_rep	CDS	16019608	16019726	.	-	2	Parent=Os05t0341600-01
Chr05	irgsp1_rep	three_prime_UTR	16019207	16019607	.	-	.	Parent=Os05t0341600-01
Chr05	irgsp1_rep	mRNA	16045008	16046612	.	+	.	ID=Os05t0341900-00;Name=Os05t0341900-00;Locus_id=Os05g0341900;Note=Similar to SAG20.;Transcript_evidence=EU955714 (DDBJ);ORF_evidence=NP_001147528.1 (RefSeq);InterPro=Uncharacterised protein family Cys-rich (IPR006461),Protein of unknown function DUF2985 (IPR021369);TENOR=Os05t0341900-00;KEGG=Os05t0341900-00
Chr05	irgsp1_rep	CDS	16045008	16046573	.	+	0	Parent=Os05t0341900-00
Chr05	irgsp1_rep	three_prime_UTR	16046574	16046612	.	+	.	Parent=Os05t0341900-00
Chr05	irgsp1_rep	mRNA	16046996	16047764	.	-	.	ID=Os05t0342000-00;Name=Os05t0342000-00;Locus_id=Os05g0342000;Note=Hypothetical conserved gene.;Transcript_evidence=CT836465 (DDBJ%2C Best hit);ORF_evidence=B9FGZ4 (UniProt);InterPro=Wound-induced protein%2C Wun1 (IPR009798);TENOR=Os05t0342000-00;KEGG=Os05t0342000-00
Chr05	irgsp1_rep	CDS	16047150	16047764	.	-	0	Parent=Os05t0342000-00
Chr05	irgsp1_rep	three_prime_UTR	16046996	16047149	.	-	.	Parent=Os05t0342000-00
Chr05	irgsp1_rep	mRNA	16058314	16059130	.	-	.	ID=Os05t0342100-01;Name=Os05t0342100-01;Locus_id=Os05g0342100;Note=Wound-induced protein%2C Wun1 domain containing protein.;Transcript_evidence=AK111106 (DDBJ%2C Best hit);ORF_evidence=B9FGZ5 (UniProt);InterPro=Wound-induced protein%2C Wun1 (IPR009798);NIAS_FLcDNA=002-176-A02;Expression=AK111106;TENOR=Os05t0342100-01;KEGG=Os05t0342100-01
Chr05	irgsp1_rep	five_prime_UTR	16059061	16059130	.	-	.	Parent=Os05t0342100-01
Chr05	irgsp1_rep	CDS	16058527	16059060	.	-	0	Parent=Os05t0342100-01
Chr05	irgsp1_rep	three_prime_UTR	16058314	16058526	.	-	.	Parent=Os05t0342100-01
Chr05	irgsp1_rep	mRNA	16107811	16112150	.	+	.	ID=Os05t0342900-01;Name=Os05t0342900-01;Locus_id=Os05g0342900;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK064169 (DDBJ%2C Best hit);ORF_evidence=A2Y3E1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-104-A02;Expression=AK064169;TENOR=Os05t0342900-01;KEGG=Os05t0342900-01
Chr05	irgsp1_rep	five_prime_UTR	16107811	16107951	.	+	.	Parent=Os05t0342900-01
Chr05	irgsp1_rep	CDS	16107952	16108137	.	+	0	Parent=Os05t0342900-01
Chr05	irgsp1_rep	CDS	16111212	16111281	.	+	0	Parent=Os05t0342900-01
Chr05	irgsp1_rep	CDS	16111384	16111439	.	+	2	Parent=Os05t0342900-01
Chr05	irgsp1_rep	three_prime_UTR	16111440	16111482	.	+	.	Parent=Os05t0342900-01
Chr05	irgsp1_rep	three_prime_UTR	16111821	16112150	.	+	.	Parent=Os05t0342900-01
Chr05	irgsp1_rep	mRNA	16150266	16152633	.	+	.	ID=Os05t0343400-01;Name=Os05t0343400-01;Locus_id=Os05g0343400;RAP-DB Gene Symbol Synonym(s)=WRKY53%2C OsWRKY53;RAP-DB Gene Name Synonym(s)=WRKY GENE 53%2C Rice WRKY gene53;CGSNL Gene Symbol=WRKY53;CGSNL Gene Name=WRKY GENE 53;Oryzabase Gene Symbol Synonym(s)=OsWRKY53%2C WRKY-53;Oryzabase Gene Name Synonym(s)=Rice WRKY gene53;Note=WRKY transcription factor%2C Disease resistance%2C Defense response;Transcript_evidence=AK121190,AB190436;ORF_evidence=Q5W6M7;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=WRKY domain (IPR003657);NIAS_FLcDNA=J023086B03;Manual Curation=December 18%2C 2015;Literature_PMID=26453434,24892523,17532485,Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6567;Expression=AK121190;TENOR=Os05t0343400-01;KEGG=Os05t0343400-01
Chr05	irgsp1_rep	five_prime_UTR	16150266	16150379	.	+	.	Parent=Os05t0343400-01
Chr05	irgsp1_rep	CDS	16150380	16150691	.	+	0	Parent=Os05t0343400-01
Chr05	irgsp1_rep	CDS	16150805	16150969	.	+	0	Parent=Os05t0343400-01
Chr05	irgsp1_rep	CDS	16151068	16151528	.	+	0	Parent=Os05t0343400-01
Chr05	irgsp1_rep	CDS	16151628	16151804	.	+	1	Parent=Os05t0343400-01
Chr05	irgsp1_rep	CDS	16151902	16152250	.	+	1	Parent=Os05t0343400-01
Chr05	irgsp1_rep	three_prime_UTR	16152251	16152633	.	+	.	Parent=Os05t0343400-01
Chr05	irgsp1_rep	mRNA	16163289	16164769	.	+	.	ID=Os05t0343800-01;Name=Os05t0343800-01;Locus_id=Os05g0343800;Note=Conserved hypothetical protein.;Transcript_evidence=AK121944 (DDBJ%2C Best hit);ORF_evidence=B8AWZ9 (UniProt);NIAS_FLcDNA=J033107F05;TENOR=Os05t0343800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	16163289	16164119	.	+	.	Parent=Os05t0343800-01
Chr05	irgsp1_rep	CDS	16164120	16164261	.	+	0	Parent=Os05t0343800-01
Chr05	irgsp1_rep	CDS	16164433	16164473	.	+	2	Parent=Os05t0343800-01
Chr05	irgsp1_rep	three_prime_UTR	16164474	16164769	.	+	.	Parent=Os05t0343800-01
Chr05	irgsp1_rep	mRNA	16178796	16179674	.	-	.	ID=Os05t0344200-01;Name=Os05t0344200-01;Locus_id=Os05g0344200;Note=Conserved hypothetical protein.;Transcript_evidence=AK119727 (DDBJ%2C Best hit),AK060058 (DDBJ%2C Best hit),AK098850 (DDBJ%2C Best hit),AK104716 (DDBJ%2C Best hit);ORF_evidence=A2Y3F1 (UniProt);NIAS_FLcDNA=002-157-H06,006-305-F02,J013000G04,001-038-A07;Expression=AK119727;TENOR=Os05t0344200-01;KEGG=Os05t0344200-01
Chr05	irgsp1_rep	five_prime_UTR	16179609	16179674	.	-	.	Parent=Os05t0344200-01
Chr05	irgsp1_rep	CDS	16179087	16179608	.	-	0	Parent=Os05t0344200-01
Chr05	irgsp1_rep	three_prime_UTR	16178796	16179086	.	-	.	Parent=Os05t0344200-01
Chr05	irgsp1_rep	mRNA	16184119	16186813	.	-	.	ID=Os05t0344400-01;Name=Os05t0344400-01;Locus_id=Os05g0344400;Note=Uncharacterised protein family UPF0497%2C trans-membrane plant domain containing protein.;Transcript_evidence=AK288026 (DDBJ%2C Best hit);ORF_evidence=NP_001055254.1 (RefSeq);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);NIAS_FLcDNA=J075128I24;TENOR=Os05t0344400-01;KEGG=Os05t0344400-01
Chr05	irgsp1_rep	five_prime_UTR	16186755	16186813	.	-	.	Parent=Os05t0344400-01
Chr05	irgsp1_rep	CDS	16186465	16186754	.	-	0	Parent=Os05t0344400-01
Chr05	irgsp1_rep	CDS	16186142	16186274	.	-	1	Parent=Os05t0344400-01
Chr05	irgsp1_rep	CDS	16184442	16184633	.	-	0	Parent=Os05t0344400-01
Chr05	irgsp1_rep	three_prime_UTR	16184119	16184441	.	-	.	Parent=Os05t0344400-01
Chr05	irgsp1_rep	mRNA	16216665	16217960	.	+	.	ID=Os05t0345100-00;Name=Os05t0345100-00;Locus_id=Os05g0345100;Note=Similar to patellin-5.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001151467.1 (RefSeq);InterPro=Cellular retinaldehyde-binding/triple function%2C C-terminal (IPR001251),Cellular retinaldehyde-binding/triple function%2C N-terminal (IPR008273),Phosphatidylinositol transfer protein-like%2C N-terminal (IPR011074);TENOR=Os05t0345100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	16216665	16217177	.	+	0	Parent=Os05t0345100-00
Chr05	irgsp1_rep	CDS	16217343	16217444	.	+	0	Parent=Os05t0345100-00
Chr05	irgsp1_rep	CDS	16217548	16217672	.	+	0	Parent=Os05t0345100-00
Chr05	irgsp1_rep	CDS	16217762	16217960	.	+	1	Parent=Os05t0345100-00
Chr05	irgsp1_rep	mRNA	16216973	16217293	.	-	.	ID=Os05t0345137-00;Name=Os05t0345137-00;Locus_id=Os05g0345137;Note=Hypothetical protein.;Transcript_evidence=BT085310 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0345137-00
Chr05	irgsp1_rep	five_prime_UTR	16217292	16217293	.	-	.	Parent=Os05t0345137-00
Chr05	irgsp1_rep	CDS	16216973	16217291	.	-	0	Parent=Os05t0345137-00
Chr05	irgsp1_rep	mRNA	16219688	16220126	.	+	.	ID=Os05t0345175-01;Name=Os05t0345175-01;Locus_id=Os05g0345175;Note=Similar to patellin-5.;Transcript_evidence=AK242433 (DDBJ%2C Best hit);ORF_evidence=NP_001148370.1 (RefSeq);NIAS_FLcDNA=J080092M23;TENOR=Os05t0345175-01;KEGG=Os05t0345175-01
Chr05	irgsp1_rep	five_prime_UTR	16219688	16219689	.	+	.	Parent=Os05t0345175-01
Chr05	irgsp1_rep	CDS	16219690	16219929	.	+	0	Parent=Os05t0345175-01
Chr05	irgsp1_rep	three_prime_UTR	16219930	16220126	.	+	.	Parent=Os05t0345175-01
Chr05	irgsp1_rep	mRNA	16253132	16265099	.	-	.	ID=Os05t0345400-02;Name=Os05t0345400-02;Locus_id=Os05g0345400;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK073748 (DDBJ%2C Best hit),AK102482 (DDBJ%2C Best hit);ORF_evidence=NP_200653.2 (RefSeq);NIAS_FLcDNA=J033066L16,J033094L12;Expression=AK073748;TENOR=Os05t0345400-02;KEGG=Os05t0345400-02
Chr05	irgsp1_rep	five_prime_UTR	16264970	16265099	.	-	.	Parent=Os05t0345400-02
Chr05	irgsp1_rep	CDS	16264823	16264969	.	-	0	Parent=Os05t0345400-02
Chr05	irgsp1_rep	CDS	16263322	16263478	.	-	0	Parent=Os05t0345400-02
Chr05	irgsp1_rep	CDS	16263119	16263237	.	-	2	Parent=Os05t0345400-02
Chr05	irgsp1_rep	CDS	16262955	16263029	.	-	0	Parent=Os05t0345400-02
Chr05	irgsp1_rep	CDS	16262267	16262360	.	-	0	Parent=Os05t0345400-02
Chr05	irgsp1_rep	CDS	16262058	16262176	.	-	2	Parent=Os05t0345400-02
Chr05	irgsp1_rep	CDS	16261397	16261467	.	-	0	Parent=Os05t0345400-02
Chr05	irgsp1_rep	CDS	16260399	16260546	.	-	1	Parent=Os05t0345400-02
Chr05	irgsp1_rep	CDS	16260129	16260304	.	-	0	Parent=Os05t0345400-02
Chr05	irgsp1_rep	CDS	16258915	16259114	.	-	1	Parent=Os05t0345400-02
Chr05	irgsp1_rep	CDS	16258663	16258793	.	-	2	Parent=Os05t0345400-02
Chr05	irgsp1_rep	CDS	16258076	16258152	.	-	0	Parent=Os05t0345400-02
Chr05	irgsp1_rep	CDS	16257571	16257645	.	-	1	Parent=Os05t0345400-02
Chr05	irgsp1_rep	CDS	16256812	16257005	.	-	1	Parent=Os05t0345400-02
Chr05	irgsp1_rep	CDS	16256598	16256716	.	-	2	Parent=Os05t0345400-02
Chr05	irgsp1_rep	CDS	16256139	16256277	.	-	0	Parent=Os05t0345400-02
Chr05	irgsp1_rep	CDS	16255933	16255979	.	-	2	Parent=Os05t0345400-02
Chr05	irgsp1_rep	CDS	16254250	16254510	.	-	0	Parent=Os05t0345400-02
Chr05	irgsp1_rep	CDS	16253266	16253967	.	-	0	Parent=Os05t0345400-02
Chr05	irgsp1_rep	three_prime_UTR	16253132	16253265	.	-	.	Parent=Os05t0345400-02
Chr05	irgsp1_rep	mRNA	16267486	16273947	.	-	.	ID=Os05t0345500-01;Name=Os05t0345500-01;Locus_id=Os05g0345500;Note=BTB/POZ domain containing protein.;Transcript_evidence=AK121789 (DDBJ%2C Best hit);ORF_evidence=XP_002879271.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),Farnesoic acid O-methyl transferase (IPR022041);NIAS_FLcDNA=J033094H14;TENOR=Os05t0345500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	16273841	16273947	.	-	.	Parent=Os05t0345500-01
Chr05	irgsp1_rep	five_prime_UTR	16272661	16272706	.	-	.	Parent=Os05t0345500-01
Chr05	irgsp1_rep	five_prime_UTR	16272158	16272173	.	-	.	Parent=Os05t0345500-01
Chr05	irgsp1_rep	CDS	16271351	16272157	.	-	0	Parent=Os05t0345500-01
Chr05	irgsp1_rep	CDS	16270931	16271260	.	-	0	Parent=Os05t0345500-01
Chr05	irgsp1_rep	CDS	16270577	16270804	.	-	0	Parent=Os05t0345500-01
Chr05	irgsp1_rep	CDS	16270348	16270395	.	-	0	Parent=Os05t0345500-01
Chr05	irgsp1_rep	three_prime_UTR	16270094	16270347	.	-	.	Parent=Os05t0345500-01
Chr05	irgsp1_rep	three_prime_UTR	16269228	16269440	.	-	.	Parent=Os05t0345500-01
Chr05	irgsp1_rep	three_prime_UTR	16268931	16268978	.	-	.	Parent=Os05t0345500-01
Chr05	irgsp1_rep	three_prime_UTR	16268759	16268814	.	-	.	Parent=Os05t0345500-01
Chr05	irgsp1_rep	three_prime_UTR	16268552	16268684	.	-	.	Parent=Os05t0345500-01
Chr05	irgsp1_rep	three_prime_UTR	16268395	16268459	.	-	.	Parent=Os05t0345500-01
Chr05	irgsp1_rep	three_prime_UTR	16268224	16268304	.	-	.	Parent=Os05t0345500-01
Chr05	irgsp1_rep	three_prime_UTR	16268059	16268127	.	-	.	Parent=Os05t0345500-01
Chr05	irgsp1_rep	three_prime_UTR	16267486	16267962	.	-	.	Parent=Os05t0345500-01
Chr05	irgsp1_rep	mRNA	16268759	16273940	.	-	.	ID=Os05t0345500-02;Name=Os05t0345500-02;Locus_id=Os05g0345500;Note=BTB/POZ domain containing protein.;Transcript_evidence=AK073761 (DDBJ%2C Best hit);ORF_evidence=Q5W6S2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),Farnesoic acid O-methyl transferase (IPR022041);NIAS_FLcDNA=J033067H05;Expression=AK073761;TENOR=Os05t0345500-02;KEGG=Os05t0345500-02
Chr05	irgsp1_rep	five_prime_UTR	16273841	16273940	.	-	.	Parent=Os05t0345500-02
Chr05	irgsp1_rep	five_prime_UTR	16272661	16272706	.	-	.	Parent=Os05t0345500-02
Chr05	irgsp1_rep	five_prime_UTR	16272158	16272173	.	-	.	Parent=Os05t0345500-02
Chr05	irgsp1_rep	CDS	16271351	16272157	.	-	0	Parent=Os05t0345500-02
Chr05	irgsp1_rep	CDS	16270931	16271260	.	-	0	Parent=Os05t0345500-02
Chr05	irgsp1_rep	CDS	16270577	16270804	.	-	0	Parent=Os05t0345500-02
Chr05	irgsp1_rep	CDS	16270348	16270395	.	-	0	Parent=Os05t0345500-02
Chr05	irgsp1_rep	three_prime_UTR	16270094	16270347	.	-	.	Parent=Os05t0345500-02
Chr05	irgsp1_rep	three_prime_UTR	16269228	16269440	.	-	.	Parent=Os05t0345500-02
Chr05	irgsp1_rep	three_prime_UTR	16268931	16269130	.	-	.	Parent=Os05t0345500-02
Chr05	irgsp1_rep	three_prime_UTR	16268759	16268814	.	-	.	Parent=Os05t0345500-02
Chr05	irgsp1_rep	mRNA	16267483	16273940	.	-	.	ID=Os05t0345500-03;Name=Os05t0345500-03;Locus_id=Os05g0345500;Note=Similar to predicted protein.;Transcript_evidence=AK068823 (DDBJ%2C Best hit);ORF_evidence=XP_002879271.1 (RefSeq);GO=Biological Process: cell adhesion (GO:0007155),Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),Coagulation factor 5/8 C-terminal type domain (IPR000421),Galactose-binding domain-like (IPR008979),BTB/POZ fold (IPR011333),BTB/Kelch-associated (IPR011705),BTB/POZ (IPR013069),Farnesoic acid O-methyl transferase (IPR022041);NIAS_FLcDNA=J013162N24;Expression=AK068823;TENOR=Os05t0345500-03;KEGG=Os05t0345500-03
Chr05	irgsp1_rep	five_prime_UTR	16273841	16273940	.	-	.	Parent=Os05t0345500-03
Chr05	irgsp1_rep	five_prime_UTR	16272158	16272173	.	-	.	Parent=Os05t0345500-03
Chr05	irgsp1_rep	CDS	16271351	16272157	.	-	0	Parent=Os05t0345500-03
Chr05	irgsp1_rep	CDS	16270931	16271260	.	-	0	Parent=Os05t0345500-03
Chr05	irgsp1_rep	CDS	16270577	16270804	.	-	0	Parent=Os05t0345500-03
Chr05	irgsp1_rep	CDS	16270094	16270255	.	-	0	Parent=Os05t0345500-03
Chr05	irgsp1_rep	CDS	16269228	16269440	.	-	0	Parent=Os05t0345500-03
Chr05	irgsp1_rep	CDS	16268931	16268978	.	-	0	Parent=Os05t0345500-03
Chr05	irgsp1_rep	CDS	16268759	16268814	.	-	0	Parent=Os05t0345500-03
Chr05	irgsp1_rep	CDS	16268552	16268684	.	-	1	Parent=Os05t0345500-03
Chr05	irgsp1_rep	CDS	16268395	16268469	.	-	0	Parent=Os05t0345500-03
Chr05	irgsp1_rep	CDS	16268224	16268304	.	-	0	Parent=Os05t0345500-03
Chr05	irgsp1_rep	CDS	16268059	16268127	.	-	0	Parent=Os05t0345500-03
Chr05	irgsp1_rep	CDS	16267744	16267962	.	-	0	Parent=Os05t0345500-03
Chr05	irgsp1_rep	three_prime_UTR	16267483	16267743	.	-	.	Parent=Os05t0345500-03
Chr05	irgsp1_rep	mRNA	16276635	16280308	.	-	.	ID=Os05t0345700-01;Name=Os05t0345700-01;Locus_id=Os05g0345700;Note=Protein of unknown function DUF569 domain containing protein.;Transcript_evidence=AK121350 (DDBJ%2C Best hit);ORF_evidence=A2Y3F8 (UniProt);InterPro=Protein of unknown function DUF569 (IPR007679),Actin cross-linking (IPR008999);NIAS_FLcDNA=J023121M11;TENOR=Os05t0345700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	16280064	16280308	.	-	.	Parent=Os05t0345700-01
Chr05	irgsp1_rep	CDS	16279551	16280063	.	-	0	Parent=Os05t0345700-01
Chr05	irgsp1_rep	CDS	16277156	16277456	.	-	0	Parent=Os05t0345700-01
Chr05	irgsp1_rep	CDS	16276932	16276969	.	-	2	Parent=Os05t0345700-01
Chr05	irgsp1_rep	three_prime_UTR	16276635	16276931	.	-	.	Parent=Os05t0345700-01
Chr05	irgsp1_rep	mRNA	16284753	16285671	.	-	.	ID=Os05t0345900-00;Name=Os05t0345900-00;Locus_id=Os05g0345900;Note=Myb/SANT-like domain domain containing protein.;Transcript_evidence=BT042069 (DDBJ);ORF_evidence=A3BUG6 (UniProt);InterPro=Myb/SANT-like domain (IPR024752);TENOR=Os05t0345900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	16285362	16285671	.	-	0	Parent=Os05t0345900-00
Chr05	irgsp1_rep	CDS	16285222	16285274	.	-	2	Parent=Os05t0345900-00
Chr05	irgsp1_rep	three_prime_UTR	16284753	16285221	.	-	.	Parent=Os05t0345900-00
Chr05	irgsp1_rep	mRNA	16289514	16296595	.	+	.	ID=Os05t0346100-01;Name=Os05t0346100-01;Locus_id=Os05g0346100;Note=Phox-like domain containing protein.;Transcript_evidence=AK066689 (DDBJ%2C Best hit);ORF_evidence=XP_002866266.1 (RefSeq);GO=Biological Process: cell communication (GO:0007154),Molecular Function: protein binding (GO:0005515),Molecular Function: phosphatidylinositol binding (GO:0035091);InterPro=Phox homologous domain (IPR001683),Vps5 C-terminal (IPR015404);NIAS_FLcDNA=J013073J06;Expression=AK066689;TENOR=Os05t0346100-01;KEGG=Os05t0346100-01
Chr05	irgsp1_rep	five_prime_UTR	16289514	16289562	.	+	.	Parent=Os05t0346100-01
Chr05	irgsp1_rep	CDS	16289563	16290531	.	+	0	Parent=Os05t0346100-01
Chr05	irgsp1_rep	CDS	16294530	16294739	.	+	0	Parent=Os05t0346100-01
Chr05	irgsp1_rep	CDS	16294823	16295083	.	+	0	Parent=Os05t0346100-01
Chr05	irgsp1_rep	CDS	16295895	16295981	.	+	0	Parent=Os05t0346100-01
Chr05	irgsp1_rep	CDS	16296250	16296345	.	+	0	Parent=Os05t0346100-01
Chr05	irgsp1_rep	three_prime_UTR	16296346	16296595	.	+	.	Parent=Os05t0346100-01
Chr05	irgsp1_rep	mRNA	16297074	16300385	.	-	.	ID=Os05t0346200-01;Name=Os05t0346200-01;Locus_id=Os05g0346200;CGSNL Gene Symbol=ERF42;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 42;Oryzabase Gene Symbol Synonym(s)=OsERF#042%2C OsERF042%2C OsERF42%2C AP2/EREBP#048%2C AP2/EREBP48%2C OsDREB2B%2C OsDREB2B2%2C OsDREB2A;Oryzabase Gene Name Synonym(s)=ethylene response factor 42%2C APETALA2/ethylene-responsive element binding protein 48%2C dehydration-responsive element-binding protein 2B;Note=Similar to Dehydration-responsive element-binding protein 2B.;Transcript_evidence=AK071850 (DDBJ%2C Best hit),AK099221 (DDBJ%2C Best hit);ORF_evidence=Q5W6R4 (UniProt);NIAS_FLcDNA=J023116E13,J013087H21;Oryzabase=10559;TENOR=Os05t0346200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	16300244	16300385	.	-	.	Parent=Os05t0346200-01
Chr05	irgsp1_rep	CDS	16300170	16300243	.	-	0	Parent=Os05t0346200-01
Chr05	irgsp1_rep	CDS	16299291	16299343	.	-	1	Parent=Os05t0346200-01
Chr05	irgsp1_rep	CDS	16298265	16298419	.	-	2	Parent=Os05t0346200-01
Chr05	irgsp1_rep	three_prime_UTR	16297074	16298264	.	-	.	Parent=Os05t0346200-01
Chr05	irgsp1_rep	mRNA	16302910	16306134	.	-	.	ID=Os05t0346300-01;Name=Os05t0346300-01;Locus_id=Os05g0346300;Oryzabase Gene Name Synonym(s)=Ribosomal protein S7;Note=Similar to 40S ribosomal protein S7.;Transcript_evidence=AK104191 (DDBJ%2C Best hit),AK061627 (DDBJ%2C Best hit),AK103081 (DDBJ%2C Best hit);ORF_evidence=Q8LJU5 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S7e (IPR000554);NIAS_FLcDNA=006-303-C09,001-035-B02,J033118F01;Oryzabase=17702;TENOR=Os05t0346300-01
Chr05	irgsp1_rep	five_prime_UTR	16306034	16306134	.	-	.	Parent=Os05t0346300-01
Chr05	irgsp1_rep	five_prime_UTR	16305314	16305325	.	-	.	Parent=Os05t0346300-01
Chr05	irgsp1_rep	CDS	16305239	16305313	.	-	0	Parent=Os05t0346300-01
Chr05	irgsp1_rep	CDS	16305085	16305158	.	-	0	Parent=Os05t0346300-01
Chr05	irgsp1_rep	CDS	16304862	16304985	.	-	1	Parent=Os05t0346300-01
Chr05	irgsp1_rep	CDS	16303807	16303989	.	-	0	Parent=Os05t0346300-01
Chr05	irgsp1_rep	CDS	16303128	16303250	.	-	0	Parent=Os05t0346300-01
Chr05	irgsp1_rep	three_prime_UTR	16302910	16303127	.	-	.	Parent=Os05t0346300-01
Chr05	irgsp1_rep	mRNA	16306509	16310464	.	+	.	ID=Os05t0346400-01;Name=Os05t0346400-01;Locus_id=Os05g0346400;Note=Protein of unknown function DUF538 family protein.;Transcript_evidence=AK102727 (DDBJ%2C Best hit),AK058872 (DDBJ%2C Best hit);ORF_evidence=B6T420 (UniProt);InterPro=Protein of unknown function DUF538 (IPR007493);NIAS_FLcDNA=J033105N07,001-006-F04;TENOR=Os05t0346400-01
Chr05	irgsp1_rep	five_prime_UTR	16306509	16306608	.	+	.	Parent=Os05t0346400-01
Chr05	irgsp1_rep	CDS	16306609	16306695	.	+	0	Parent=Os05t0346400-01
Chr05	irgsp1_rep	CDS	16309263	16309317	.	+	0	Parent=Os05t0346400-01
Chr05	irgsp1_rep	CDS	16309848	16310218	.	+	2	Parent=Os05t0346400-01
Chr05	irgsp1_rep	three_prime_UTR	16310219	16310464	.	+	.	Parent=Os05t0346400-01
Chr05	irgsp1_rep	mRNA	16312809	16319379	.	-	.	ID=Os05t0346500-01;Name=Os05t0346500-01;Locus_id=Os05g0346500;Note=Glycoside hydrolase%2C family 85 domain containing protein.;Transcript_evidence=AK112067 (DDBJ%2C Best hit);ORF_evidence=B9FH05 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Cellular Component: cytoplasm (GO:0005737),Molecular Function: catalytic activity (GO:0003824),Molecular Function: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity (GO:0033925),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 85 (IPR005201),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781);NIAS_FLcDNA=001-117-D09;TENOR=Os05t0346500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	16319379	16319379	.	-	.	Parent=Os05t0346500-01
Chr05	irgsp1_rep	CDS	16318941	16319378	.	-	0	Parent=Os05t0346500-01
Chr05	irgsp1_rep	CDS	16318676	16318813	.	-	0	Parent=Os05t0346500-01
Chr05	irgsp1_rep	CDS	16318309	16318418	.	-	0	Parent=Os05t0346500-01
Chr05	irgsp1_rep	CDS	16318102	16318213	.	-	1	Parent=Os05t0346500-01
Chr05	irgsp1_rep	CDS	16317920	16318027	.	-	0	Parent=Os05t0346500-01
Chr05	irgsp1_rep	CDS	16317495	16317607	.	-	0	Parent=Os05t0346500-01
Chr05	irgsp1_rep	CDS	16317336	16317417	.	-	1	Parent=Os05t0346500-01
Chr05	irgsp1_rep	CDS	16316573	16316653	.	-	0	Parent=Os05t0346500-01
Chr05	irgsp1_rep	CDS	16316183	16316229	.	-	0	Parent=Os05t0346500-01
Chr05	irgsp1_rep	CDS	16313975	16314110	.	-	1	Parent=Os05t0346500-01
Chr05	irgsp1_rep	CDS	16312933	16313673	.	-	0	Parent=Os05t0346500-01
Chr05	irgsp1_rep	three_prime_UTR	16312809	16312932	.	-	.	Parent=Os05t0346500-01
Chr05	irgsp1_rep	mRNA	16327564	16328326	.	-	.	ID=Os05t0346800-00;Name=Os05t0346800-00;Locus_id=Os05g0346800;CGSNL Gene Symbol=LBD5-3;CGSNL Gene Name=LBD-CONTAINING PROTEIN 5-3;Oryzabase Gene Symbol Synonym(s)=OsLBD5-3;Oryzabase Gene Name Synonym(s)=lateral organ boundary domain-containing protein 5-3%2C LBD-containing protein 5-3;Note=Similar to ASL5%3B DNA binding / protein binding.;Transcript_evidence=AK368515 (DDBJ);ORF_evidence=NP_565695.1 (RefSeq);InterPro=Lateral organ boundaries%2C LOB (IPR004883);Oryzabase=23306;TENOR=Os05t0346800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	16328150	16328326	.	-	0	Parent=Os05t0346800-00
Chr05	irgsp1_rep	CDS	16327595	16328041	.	-	0	Parent=Os05t0346800-00
Chr05	irgsp1_rep	three_prime_UTR	16327564	16327594	.	-	.	Parent=Os05t0346800-00
Chr05	irgsp1_rep	mRNA	16343878	16344050	.	-	.	ID=Os05t0346901-00;Name=Os05t0346901-00;Locus_id=Os05g0346901;Note=Non-protein coding transcript.;Transcript_evidence=CT836441 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os05t0346901-00
Chr05	irgsp1_rep	exon	16343878	16344050	.	-	.	Parent=Os05t0346901-00
Chr05	irgsp1_rep	mRNA	16344071	16346557	.	-	.	ID=Os05t0347000-01;Name=Os05t0347000-01;Locus_id=Os05g0347000;CGSNL Gene Symbol=DLN136;CGSNL Gene Name=DLN REPRESSOR 136;Oryzabase Gene Symbol Synonym(s)=OsDLN136;Oryzabase Gene Name Synonym(s)=DLN repressor 136%2C DLN motif protein 136;Note=TAFII55 protein conserved region domain containing protein.;Transcript_evidence=AK109444 (DDBJ%2C Best hit);ORF_evidence=B6UGL3 (UniProt);GO=Biological Process: transcription initiation from RNA polymerase II promoter (GO:0006367),Cellular Component: transcription factor TFIID complex (GO:0005669);InterPro=TAFII55 protein%2C conserved region (IPR006751);NIAS_FLcDNA=001-101-F01;Oryzabase=23198;Expression=AK109444;TENOR=Os05t0347000-01;KEGG=Os05t0347000-01
Chr05	irgsp1_rep	five_prime_UTR	16346404	16346557	.	-	.	Parent=Os05t0347000-01
Chr05	irgsp1_rep	CDS	16346274	16346403	.	-	0	Parent=Os05t0347000-01
Chr05	irgsp1_rep	CDS	16345317	16345450	.	-	2	Parent=Os05t0347000-01
Chr05	irgsp1_rep	CDS	16345119	16345238	.	-	0	Parent=Os05t0347000-01
Chr05	irgsp1_rep	CDS	16344963	16345023	.	-	0	Parent=Os05t0347000-01
Chr05	irgsp1_rep	CDS	16344224	16344381	.	-	2	Parent=Os05t0347000-01
Chr05	irgsp1_rep	three_prime_UTR	16344071	16344223	.	-	.	Parent=Os05t0347000-01
Chr05	irgsp1_rep	mRNA	16362771	16364006	.	-	.	ID=Os05t0347400-01;Name=Os05t0347400-01;Locus_id=Os05g0347400;CGSNL Gene Symbol=G1L9;CGSNL Gene Name=G1 LIKE PROTEIN 9;Oryzabase Gene Symbol Synonym(s)=OsG1L9;Note=Protein of unknown function DUF640 domain containing protein.;Transcript_evidence=AK106384 (DDBJ%2C Best hit);ORF_evidence=NP_563780.1 (RefSeq);InterPro=Domain of unknown function DUF640 (IPR006936);NIAS_FLcDNA=002-102-E04;Oryzabase=8890;Expression=AK106384;TENOR=Os05t0347400-01;KEGG=Os05t0347400-01
Chr05	irgsp1_rep	five_prime_UTR	16363893	16364006	.	-	.	Parent=Os05t0347400-01
Chr05	irgsp1_rep	CDS	16363038	16363892	.	-	0	Parent=Os05t0347400-01
Chr05	irgsp1_rep	three_prime_UTR	16362771	16363037	.	-	.	Parent=Os05t0347400-01
Chr05	irgsp1_rep	mRNA	16421495	16423179	.	-	.	ID=Os05t0348100-01;Name=Os05t0348100-01;Locus_id=Os05g0348100;Note=Similar to CRR23 ((chlororespiratory reduction 23).;Transcript_evidence=AK061434 (DDBJ%2C Best hit);ORF_evidence=NP_177233.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on NADH or NADPH%2C quinone or similar compound as acceptor (GO:0016655);InterPro=NAD(P)H-quinone oxidoreductase subunit L (IPR019654);NIAS_FLcDNA=006-307-A08;TENOR=Os05t0348100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	16423017	16423179	.	-	.	Parent=Os05t0348100-01
Chr05	irgsp1_rep	five_prime_UTR	16422833	16422928	.	-	.	Parent=Os05t0348100-01
Chr05	irgsp1_rep	five_prime_UTR	16422581	16422729	.	-	.	Parent=Os05t0348100-01
Chr05	irgsp1_rep	CDS	16422432	16422580	.	-	0	Parent=Os05t0348100-01
Chr05	irgsp1_rep	CDS	16421778	16421913	.	-	1	Parent=Os05t0348100-01
Chr05	irgsp1_rep	three_prime_UTR	16421495	16421777	.	-	.	Parent=Os05t0348100-01
Chr05	irgsp1_rep	mRNA	16463098	16463737	.	-	.	ID=Os05t0348700-01;Name=Os05t0348700-01;Locus_id=Os05g0348700;Note=Hypothetical gene.;Transcript_evidence=AK109316 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-188-G04;Expression=AK109316;TENOR=Os05t0348700-01;KEGG=Os05t0348700-01
Chr05	irgsp1_rep	five_prime_UTR	16463737	16463737	.	-	.	Parent=Os05t0348700-01
Chr05	irgsp1_rep	CDS	16463491	16463736	.	-	0	Parent=Os05t0348700-01
Chr05	irgsp1_rep	three_prime_UTR	16463098	16463490	.	-	.	Parent=Os05t0348700-01
Chr05	irgsp1_rep	mRNA	16466164	16466954	.	-	.	ID=Os05t0348900-00;Name=Os05t0348900-00;Locus_id=Os05g0348900;Note=Similar to triacylglycerol lipase.;Transcript_evidence=EU964759 (DDBJ);ORF_evidence=NP_001149813.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921);TENOR=Os05t0348900-00;KEGG=Os05t0348900-00
Chr05	irgsp1_rep	CDS	16466721	16466954	.	-	0	Parent=Os05t0348900-00
Chr05	irgsp1_rep	CDS	16466269	16466649	.	-	0	Parent=Os05t0348900-00
Chr05	irgsp1_rep	three_prime_UTR	16466164	16466268	.	-	.	Parent=Os05t0348900-00
Chr05	irgsp1_rep	mRNA	16469156	16472834	.	-	.	ID=Os05t0349000-01;Name=Os05t0349000-01;Locus_id=Os05g0349000;Note=Protein of unknown function DUF3355 domain containing protein.;Transcript_evidence=AK070681 (DDBJ%2C Best hit);ORF_evidence=longestORF;InterPro=Protein of unknown function DUF3355 (IPR021790);NIAS_FLcDNA=J023063E02;Expression=AK070681;TENOR=Os05t0349000-01;KEGG=Os05t0349000-01
Chr05	irgsp1_rep	five_prime_UTR	16472702	16472834	.	-	.	Parent=Os05t0349000-01
Chr05	irgsp1_rep	five_prime_UTR	16472343	16472512	.	-	.	Parent=Os05t0349000-01
Chr05	irgsp1_rep	five_prime_UTR	16472175	16472275	.	-	.	Parent=Os05t0349000-01
Chr05	irgsp1_rep	CDS	16471815	16472174	.	-	0	Parent=Os05t0349000-01
Chr05	irgsp1_rep	three_prime_UTR	16469156	16471814	.	-	.	Parent=Os05t0349000-01
Chr05	irgsp1_rep	mRNA	16468040	16472774	.	-	.	ID=Os05t0349000-02;Name=Os05t0349000-02;Locus_id=Os05g0349000;Note=Hypothetical protein.;Transcript_evidence=AK120753 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J023006K02;TENOR=Os05t0349000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	16472721	16472774	.	-	.	Parent=Os05t0349000-02
Chr05	irgsp1_rep	CDS	16472238	16472720	.	-	0	Parent=Os05t0349000-02
Chr05	irgsp1_rep	three_prime_UTR	16468876	16472237	.	-	.	Parent=Os05t0349000-02
Chr05	irgsp1_rep	three_prime_UTR	16468040	16468756	.	-	.	Parent=Os05t0349000-02
Chr05	irgsp1_rep	mRNA	16477641	16484494	.	-	.	ID=Os05t0349200-01;Name=Os05t0349200-01;Locus_id=Os05g0349200;Note=Similar to AMP deaminase 1 (EC 3.5.4.6) (Myoadenylate deaminase) (AMP deaminase isoform M).;Transcript_evidence=AK058281 (DDBJ%2C Best hit);ORF_evidence=NP_850294.1 (RefSeq);GO=Biological Process: purine ribonucleoside monophosphate biosynthetic process (GO:0009168),Molecular Function: deaminase activity (GO:0019239);InterPro=Adenosine/AMP deaminase (IPR001365),Adenosine/AMP deaminase active site (IPR006650);NIAS_FLcDNA=001-013-D05;Expression=AK058281;TENOR=Os05t0349200-01;KEGG=Os05t0349200-01 (EC:3.5.4.6)
Chr05	irgsp1_rep	CDS	16484359	16484494	.	-	0	Parent=Os05t0349200-01
Chr05	irgsp1_rep	CDS	16482067	16482128	.	-	2	Parent=Os05t0349200-01
Chr05	irgsp1_rep	CDS	16481863	16481976	.	-	0	Parent=Os05t0349200-01
Chr05	irgsp1_rep	CDS	16480312	16480452	.	-	0	Parent=Os05t0349200-01
Chr05	irgsp1_rep	CDS	16479535	16479687	.	-	0	Parent=Os05t0349200-01
Chr05	irgsp1_rep	CDS	16479410	16479463	.	-	0	Parent=Os05t0349200-01
Chr05	irgsp1_rep	CDS	16479231	16479341	.	-	0	Parent=Os05t0349200-01
Chr05	irgsp1_rep	CDS	16478887	16479060	.	-	0	Parent=Os05t0349200-01
Chr05	irgsp1_rep	CDS	16478599	16478682	.	-	0	Parent=Os05t0349200-01
Chr05	irgsp1_rep	CDS	16478322	16478417	.	-	0	Parent=Os05t0349200-01
Chr05	irgsp1_rep	CDS	16478153	16478221	.	-	0	Parent=Os05t0349200-01
Chr05	irgsp1_rep	three_prime_UTR	16478099	16478152	.	-	.	Parent=Os05t0349200-01
Chr05	irgsp1_rep	three_prime_UTR	16477641	16477983	.	-	.	Parent=Os05t0349200-01
Chr05	irgsp1_rep	mRNA	16501902	16502472	.	+	.	ID=Os05t0349400-01;Name=Os05t0349400-01;Locus_id=Os05g0349400;Note=Conserved hypothetical protein.;Transcript_evidence=AK107832 (DDBJ%2C Best hit);ORF_evidence=A2Y3G9 (UniProt);NIAS_FLcDNA=002-133-H01;TENOR=Os05t0349400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	16501902	16501933	.	+	.	Parent=Os05t0349400-01
Chr05	irgsp1_rep	CDS	16501934	16502203	.	+	0	Parent=Os05t0349400-01
Chr05	irgsp1_rep	three_prime_UTR	16502204	16502472	.	+	.	Parent=Os05t0349400-01
Chr05	irgsp1_rep	mRNA	16502945	16506613	.	-	.	ID=Os05t0349500-01;Name=Os05t0349500-01;Locus_id=Os05g0349500;Note=Pleckstrin homology-type domain containing protein.;Transcript_evidence=AK101703 (DDBJ%2C Best hit);ORF_evidence=B6TRM8 (UniProt);GO=Biological Process: intracellular transport (GO:0046907),Cellular Component: nuclear pore (GO:0005643),Molecular Function: protein binding (GO:0005515);InterPro=Ran binding protein 1 (IPR000156),Pleckstrin homology-type (IPR011993),Nuclear pore complex%2C NUP2/50/61 (IPR015007);NIAS_FLcDNA=J033060F03;Expression=AK101703;TENOR=Os05t0349500-01;KEGG=Os05t0349500-01
Chr05	irgsp1_rep	five_prime_UTR	16506392	16506613	.	-	.	Parent=Os05t0349500-01
Chr05	irgsp1_rep	five_prime_UTR	16504831	16504849	.	-	.	Parent=Os05t0349500-01
Chr05	irgsp1_rep	CDS	16503412	16504830	.	-	0	Parent=Os05t0349500-01
Chr05	irgsp1_rep	three_prime_UTR	16502945	16503411	.	-	.	Parent=Os05t0349500-01
Chr05	irgsp1_rep	mRNA	16503174	16504860	.	+	.	ID=Os05t0349600-00;Name=Os05t0349600-00;Locus_id=Os05g0349600;Note=Hypothetical protein.;Transcript_evidence=tplb0062b17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0349600-00
Chr05	irgsp1_rep	five_prime_UTR	16503174	16503676	.	+	.	Parent=Os05t0349600-00
Chr05	irgsp1_rep	CDS	16503677	16504360	.	+	0	Parent=Os05t0349600-00
Chr05	irgsp1_rep	three_prime_UTR	16504361	16504860	.	+	.	Parent=Os05t0349600-00
Chr05	irgsp1_rep	mRNA	16512117	16517751	.	+	.	ID=Os05t0349700-01;Name=Os05t0349700-01;Locus_id=Os05g0349700;RAP-DB Gene Symbol Synonym(s)=YGL1%2C YGL1%2C ygl1%2C CHLG%2C Ygl1%2C CS;RAP-DB Gene Name Synonym(s)=YELLOW GREEN LEAF 1%2C chlorina%2C Chl synthetase%2C Chlorophyll synthase;CGSNL Gene Symbol=YGL1;CGSNL Gene Name=YELLOW-GREEN LEAF 1;Oryzabase Gene Symbol Synonym(s)=OsYGL1%2C CHLG%2C Ygl1%2C CS%2C OsCHLG;Oryzabase Gene Name Synonym(s)=chlorina%2C Chl synthetase%2C Chlorophyll synthase%2C yellow green leaf 1;Note=Chl synthase%2C Chl biosynthesis;Transcript_evidence=AK099004 (Genbank);ORF_evidence=Q5W6H5 (UniProt),B7ENB3 (UniProt);GO=Biological Process: bacteriochlorophyll biosynthetic process (GO:0030494),Cellular Component: integral to membrane (GO:0016021),Molecular Function: prenyltransferase activity (GO:0004659);InterPro=UbiA prenyltransferase family (IPR000537),Bacteriochlorophyll/chlorophyll synthetase (IPR006372),Chlorophyll synthase%2C ChlG (IPR011799);NIAS_FLcDNA=J013108A17;Manual Curation=August 18%2C 2009;Literature_PMID=17535821;Oryzabase=7498;Expression=AK099004;TENOR=Os05t0349700-01;KEGG=Os05t0349700-01 (EC:2.5.1.62)
Chr05	irgsp1_rep	five_prime_UTR	16512117	16512145	.	+	.	Parent=Os05t0349700-01
Chr05	irgsp1_rep	CDS	16512146	16512260	.	+	0	Parent=Os05t0349700-01
Chr05	irgsp1_rep	CDS	16512363	16512410	.	+	2	Parent=Os05t0349700-01
Chr05	irgsp1_rep	CDS	16512498	16512583	.	+	2	Parent=Os05t0349700-01
Chr05	irgsp1_rep	CDS	16513362	16513449	.	+	0	Parent=Os05t0349700-01
Chr05	irgsp1_rep	CDS	16513958	16514043	.	+	2	Parent=Os05t0349700-01
Chr05	irgsp1_rep	CDS	16514175	16514261	.	+	0	Parent=Os05t0349700-01
Chr05	irgsp1_rep	CDS	16514799	16514864	.	+	0	Parent=Os05t0349700-01
Chr05	irgsp1_rep	CDS	16514958	16515041	.	+	0	Parent=Os05t0349700-01
Chr05	irgsp1_rep	CDS	16515161	16515222	.	+	0	Parent=Os05t0349700-01
Chr05	irgsp1_rep	CDS	16515323	16515398	.	+	1	Parent=Os05t0349700-01
Chr05	irgsp1_rep	CDS	16515477	16515539	.	+	0	Parent=Os05t0349700-01
Chr05	irgsp1_rep	CDS	16515631	16515712	.	+	0	Parent=Os05t0349700-01
Chr05	irgsp1_rep	CDS	16516411	16516487	.	+	2	Parent=Os05t0349700-01
Chr05	irgsp1_rep	CDS	16517073	16517120	.	+	0	Parent=Os05t0349700-01
Chr05	irgsp1_rep	CDS	16517252	16517314	.	+	0	Parent=Os05t0349700-01
Chr05	irgsp1_rep	three_prime_UTR	16517315	16517751	.	+	.	Parent=Os05t0349700-01
Chr05	irgsp1_rep	mRNA	16512069	16517776	.	+	.	ID=Os05t0349700-02;Name=Os05t0349700-02;Locus_id=Os05g0349700;CGSNL Gene Symbol=YGL1;CGSNL Gene Name=YELLOW-GREEN LEAF 1;Oryzabase Gene Symbol Synonym(s)=OsYGL1%2C CHLG%2C Ygl1%2C CS%2C OsCHLG;Oryzabase Gene Name Synonym(s)=chlorina%2C Chl synthetase%2C Chlorophyll synthase%2C yellow green leaf 1;Note=Similar to Chlorophyll synthase.;Transcript_evidence=AK068855 (DDBJ%2C Best hit);ORF_evidence=A4GUA1 (UniProt);GO=Biological Process: bacteriochlorophyll biosynthetic process (GO:0030494),Cellular Component: integral to membrane (GO:0016021),Molecular Function: prenyltransferase activity (GO:0004659);InterPro=UbiA prenyltransferase family (IPR000537),Bacteriochlorophyll/chlorophyll synthetase (IPR006372),Chlorophyll synthase%2C ChlG (IPR011799);NIAS_FLcDNA=J013169I11;Oryzabase=7498;Expression=AK068855;TENOR=Os05t0349700-02;KEGG=Os05t0349700-02 (EC:2.5.1.62)
Chr05	irgsp1_rep	five_prime_UTR	16512069	16512145	.	+	.	Parent=Os05t0349700-02
Chr05	irgsp1_rep	CDS	16512146	16512260	.	+	0	Parent=Os05t0349700-02
Chr05	irgsp1_rep	CDS	16512363	16512410	.	+	2	Parent=Os05t0349700-02
Chr05	irgsp1_rep	CDS	16512498	16512583	.	+	2	Parent=Os05t0349700-02
Chr05	irgsp1_rep	CDS	16513362	16513449	.	+	0	Parent=Os05t0349700-02
Chr05	irgsp1_rep	CDS	16513958	16514043	.	+	2	Parent=Os05t0349700-02
Chr05	irgsp1_rep	CDS	16514175	16514261	.	+	0	Parent=Os05t0349700-02
Chr05	irgsp1_rep	CDS	16514799	16514864	.	+	0	Parent=Os05t0349700-02
Chr05	irgsp1_rep	CDS	16514958	16515041	.	+	0	Parent=Os05t0349700-02
Chr05	irgsp1_rep	CDS	16515161	16515222	.	+	0	Parent=Os05t0349700-02
Chr05	irgsp1_rep	CDS	16515323	16515398	.	+	1	Parent=Os05t0349700-02
Chr05	irgsp1_rep	CDS	16515477	16515539	.	+	0	Parent=Os05t0349700-02
Chr05	irgsp1_rep	CDS	16515631	16515712	.	+	0	Parent=Os05t0349700-02
Chr05	irgsp1_rep	CDS	16516411	16516487	.	+	2	Parent=Os05t0349700-02
Chr05	irgsp1_rep	CDS	16517073	16517120	.	+	0	Parent=Os05t0349700-02
Chr05	irgsp1_rep	CDS	16517252	16517314	.	+	0	Parent=Os05t0349700-02
Chr05	irgsp1_rep	three_prime_UTR	16517315	16517776	.	+	.	Parent=Os05t0349700-02
Chr05	irgsp1_rep	mRNA	16514974	16517848	.	+	.	ID=Os05t0349700-03;Name=Os05t0349700-03;Locus_id=Os05g0349700;CGSNL Gene Symbol=YGL1;CGSNL Gene Name=YELLOW-GREEN LEAF 1;Oryzabase Gene Symbol Synonym(s)=OsYGL1%2C CHLG%2C Ygl1%2C CS%2C OsCHLG;Oryzabase Gene Name Synonym(s)=chlorina%2C Chl synthetase%2C Chlorophyll synthase%2C yellow green leaf 1;Note=Similar to Chlorophyll synthase.;Transcript_evidence=AK060912 (DDBJ%2C Best hit);ORF_evidence=A4GUA1 (UniProt);GO=Biological Process: bacteriochlorophyll biosynthetic process (GO:0030494),Cellular Component: integral to membrane (GO:0016021),Molecular Function: prenyltransferase activity (GO:0004659);InterPro=UbiA prenyltransferase family (IPR000537),Bacteriochlorophyll/chlorophyll synthetase (IPR006372);NIAS_FLcDNA=001-035-F12;Oryzabase=7498;Expression=AK060912;TENOR=Os05t0349700-03;KEGG=Os05t0349700-03 (EC:2.5.1.62)
Chr05	irgsp1_rep	five_prime_UTR	16514974	16514975	.	+	.	Parent=Os05t0349700-03
Chr05	irgsp1_rep	CDS	16514976	16515041	.	+	0	Parent=Os05t0349700-03
Chr05	irgsp1_rep	CDS	16515161	16515222	.	+	0	Parent=Os05t0349700-03
Chr05	irgsp1_rep	CDS	16515323	16515398	.	+	1	Parent=Os05t0349700-03
Chr05	irgsp1_rep	CDS	16515477	16515539	.	+	0	Parent=Os05t0349700-03
Chr05	irgsp1_rep	CDS	16515631	16515712	.	+	0	Parent=Os05t0349700-03
Chr05	irgsp1_rep	CDS	16516411	16516487	.	+	2	Parent=Os05t0349700-03
Chr05	irgsp1_rep	CDS	16517073	16517120	.	+	0	Parent=Os05t0349700-03
Chr05	irgsp1_rep	CDS	16517252	16517314	.	+	0	Parent=Os05t0349700-03
Chr05	irgsp1_rep	three_prime_UTR	16517315	16517848	.	+	.	Parent=Os05t0349700-03
Chr05	irgsp1_rep	mRNA	16518577	16519493	.	-	.	ID=Os05t0349800-01;Name=Os05t0349800-01;Locus_id=Os05g0349800;CGSNL Gene Symbol=EM;CGSNL Gene Name=ABA REGULATED GENE;Oryzabase Gene Symbol Synonym(s)=Em*%2C EMP1%2C Emp1%2C EM%2C Em%2C OsEm%2C Osem%2C OsLEA21%2C OsEm1%2C Em1;Oryzabase Gene Name Synonym(s)=ABA regulated gene%2C ABA-regulated gene%2C Embryonic abundant protein 1%2C Em protein%2C Early methionine labelled polypeptide%2C Abscisic acid induced protein%2C Embryogenic protein%2C late embryogenesis abundant protein 21;Note=Embryonic abundant protein 1.;Transcript_evidence=AK063677 (DDBJ%2C Best hit);ORF_evidence=P46520 (UniProt);InterPro=Stress induced protein (IPR000389),Small hydrophilic plant seed protein%2C conserved site (IPR022377);NIAS_FLcDNA=001-119-E02;Oryzabase=644;Expression=AK063677;TENOR=Os05t0349800-01;KEGG=Os05t0349800-01
Chr05	irgsp1_rep	five_prime_UTR	16519389	16519493	.	-	.	Parent=Os05t0349800-01
Chr05	irgsp1_rep	CDS	16519265	16519388	.	-	0	Parent=Os05t0349800-01
Chr05	irgsp1_rep	CDS	16518994	16519157	.	-	2	Parent=Os05t0349800-01
Chr05	irgsp1_rep	three_prime_UTR	16518577	16518993	.	-	.	Parent=Os05t0349800-01
Chr05	irgsp1_rep	mRNA	16518582	16519158	.	-	.	ID=Os05t0349800-02;Name=Os05t0349800-02;Locus_id=Os05g0349800;CGSNL Gene Symbol=EM;CGSNL Gene Name=ABA REGULATED GENE;Oryzabase Gene Symbol Synonym(s)=Em*%2C EMP1%2C Emp1%2C EM%2C Em%2C OsEm%2C Osem%2C OsLEA21%2C OsEm1%2C Em1;Oryzabase Gene Name Synonym(s)=ABA regulated gene%2C ABA-regulated gene%2C Embryonic abundant protein 1%2C Em protein%2C Early methionine labelled polypeptide%2C Abscisic acid induced protein%2C Embryogenic protein%2C late embryogenesis abundant protein 21;Note=Similar to Embryonic abundant protein 1.;Transcript_evidence=AK119674 (DDBJ%2C Best hit);ORF_evidence=P46520 (UniProt);InterPro=Stress induced protein (IPR000389);NIAS_FLcDNA=002-156-G09;Oryzabase=644;Expression=AK119674;TENOR=Os05t0349800-02;KEGG=Os05t0349800-02
Chr05	irgsp1_rep	CDS	16518994	16519158	.	-	0	Parent=Os05t0349800-02
Chr05	irgsp1_rep	three_prime_UTR	16518582	16518993	.	-	.	Parent=Os05t0349800-02
Chr05	irgsp1_rep	mRNA	16548225	16548915	.	-	.	ID=Os05t0350150-00;Name=Os05t0350150-00;Locus_id=Os05g0350150;Note=Similar to HAT family dimerisation domain containing protein.;Transcript_evidence=BT036163 (DDBJ);ORF_evidence=Q7XED8 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein dimerization activity (GO:0046983);InterPro=HAT dimerisation (IPR008906),Ribonuclease H-like (IPR012337);TENOR=Os05t0350150-00
Chr05	irgsp1_rep	five_prime_UTR	16548818	16548915	.	-	.	Parent=Os05t0350150-00
Chr05	irgsp1_rep	CDS	16548278	16548817	.	-	0	Parent=Os05t0350150-00
Chr05	irgsp1_rep	three_prime_UTR	16548225	16548277	.	-	.	Parent=Os05t0350150-00
Chr05	irgsp1_rep	mRNA	16552223	16555649	.	+	.	ID=Os05t0350500-01;Name=Os05t0350500-01;Locus_id=Os05g0350500;Note=Peptidase M24%2C structural domain domain containing protein.;Transcript_evidence=AK061712 (DDBJ%2C Best hit),AK102897 (DDBJ%2C Best hit);ORF_evidence=O22523 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: cellular process (GO:0009987),Molecular Function: aminopeptidase activity (GO:0004177),Molecular Function: metalloexopeptidase activity (GO:0008235);InterPro=Peptidase M24%2C structural domain (IPR000994),Peptidase M24%2C methionine aminopeptidase (IPR001714),Proliferation-associated protein 1 (IPR004545),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=001-037-G08,J033112P14;Expression=AK061712;TENOR=Os05t0350500-01;KEGG=Os05t0350500-01
Chr05	irgsp1_rep	five_prime_UTR	16552223	16552367	.	+	.	Parent=Os05t0350500-01
Chr05	irgsp1_rep	CDS	16552484	16552580	.	+	0	Parent=Os05t0350500-01
Chr05	irgsp1_rep	CDS	16553547	16553631	.	+	2	Parent=Os05t0350500-01
Chr05	irgsp1_rep	CDS	16553743	16553892	.	+	1	Parent=Os05t0350500-01
Chr05	irgsp1_rep	CDS	16553969	16554122	.	+	1	Parent=Os05t0350500-01
Chr05	irgsp1_rep	CDS	16554379	16554594	.	+	0	Parent=Os05t0350500-01
Chr05	irgsp1_rep	CDS	16554676	16554812	.	+	0	Parent=Os05t0350500-01
Chr05	irgsp1_rep	CDS	16554888	16554979	.	+	1	Parent=Os05t0350500-01
Chr05	irgsp1_rep	CDS	16555193	16555375	.	+	2	Parent=Os05t0350500-01
Chr05	irgsp1_rep	CDS	16555482	16555549	.	+	2	Parent=Os05t0350500-01
Chr05	irgsp1_rep	three_prime_UTR	16555550	16555649	.	+	.	Parent=Os05t0350500-01
Chr05	irgsp1_rep	mRNA	16559837	16562519	.	+	.	ID=Os05t0350600-01;Name=Os05t0350600-01;Locus_id=Os05g0350600;Note=Similar to Atranbp1b protein.;Transcript_evidence=AK066244 (DDBJ%2C Best hit);ORF_evidence=NP_001148666.1 (RefSeq);GO=Biological Process: intracellular transport (GO:0046907),Molecular Function: protein binding (GO:0005515);InterPro=Ran binding protein 1 (IPR000156),Pleckstrin homology-type (IPR011993);NIAS_FLcDNA=J013055L05;Expression=AK066244;TENOR=Os05t0350600-01;KEGG=Os05t0350600-01
Chr05	irgsp1_rep	five_prime_UTR	16559837	16559885	.	+	.	Parent=Os05t0350600-01
Chr05	irgsp1_rep	CDS	16559886	16560061	.	+	0	Parent=Os05t0350600-01
Chr05	irgsp1_rep	CDS	16560176	16560327	.	+	1	Parent=Os05t0350600-01
Chr05	irgsp1_rep	CDS	16560515	16560640	.	+	2	Parent=Os05t0350600-01
Chr05	irgsp1_rep	CDS	16561886	16562094	.	+	2	Parent=Os05t0350600-01
Chr05	irgsp1_rep	three_prime_UTR	16562095	16562519	.	+	.	Parent=Os05t0350600-01
Chr05	irgsp1_rep	mRNA	16560614	16562513	.	+	.	ID=Os05t0350600-02;Name=Os05t0350600-02;Locus_id=Os05g0350600;Note=Similar to ran-binding protein 1.;Transcript_evidence=AK059176 (DDBJ%2C Best hit);ORF_evidence=NP_001148904.1 (RefSeq);NIAS_FLcDNA=001-023-F06;Expression=AK059176;TENOR=Os05t0350600-02;KEGG=Os05t0350600-02
Chr05	irgsp1_rep	five_prime_UTR	16560614	16560615	.	+	.	Parent=Os05t0350600-02
Chr05	irgsp1_rep	CDS	16560616	16560640	.	+	0	Parent=Os05t0350600-02
Chr05	irgsp1_rep	CDS	16561886	16562094	.	+	2	Parent=Os05t0350600-02
Chr05	irgsp1_rep	three_prime_UTR	16562095	16562513	.	+	.	Parent=Os05t0350600-02
Chr05	irgsp1_rep	mRNA	16566541	16577995	.	+	.	ID=Os05t0350700-01;Name=Os05t0350700-01;Locus_id=Os05g0350700;Note=Conserved hypothetical protein.;Transcript_evidence=AK071365 (DDBJ%2C Best hit);ORF_evidence=F2E525 (UniProt);NIAS_FLcDNA=J023092E14;Expression=AK071365;TENOR=Os05t0350700-01;KEGG=Os05t0350700-01
Chr05	irgsp1_rep	five_prime_UTR	16566541	16566756	.	+	.	Parent=Os05t0350700-01
Chr05	irgsp1_rep	five_prime_UTR	16568117	16568249	.	+	.	Parent=Os05t0350700-01
Chr05	irgsp1_rep	CDS	16568250	16568647	.	+	0	Parent=Os05t0350700-01
Chr05	irgsp1_rep	CDS	16568929	16569181	.	+	1	Parent=Os05t0350700-01
Chr05	irgsp1_rep	CDS	16569564	16569862	.	+	0	Parent=Os05t0350700-01
Chr05	irgsp1_rep	CDS	16570124	16570300	.	+	1	Parent=Os05t0350700-01
Chr05	irgsp1_rep	CDS	16570455	16571192	.	+	1	Parent=Os05t0350700-01
Chr05	irgsp1_rep	CDS	16571261	16571355	.	+	1	Parent=Os05t0350700-01
Chr05	irgsp1_rep	CDS	16571434	16571487	.	+	2	Parent=Os05t0350700-01
Chr05	irgsp1_rep	CDS	16571571	16571659	.	+	2	Parent=Os05t0350700-01
Chr05	irgsp1_rep	CDS	16571756	16571821	.	+	0	Parent=Os05t0350700-01
Chr05	irgsp1_rep	CDS	16572046	16572597	.	+	0	Parent=Os05t0350700-01
Chr05	irgsp1_rep	CDS	16573450	16573524	.	+	0	Parent=Os05t0350700-01
Chr05	irgsp1_rep	CDS	16573876	16573946	.	+	0	Parent=Os05t0350700-01
Chr05	irgsp1_rep	CDS	16574027	16574084	.	+	1	Parent=Os05t0350700-01
Chr05	irgsp1_rep	CDS	16576622	16576817	.	+	0	Parent=Os05t0350700-01
Chr05	irgsp1_rep	CDS	16576985	16577619	.	+	2	Parent=Os05t0350700-01
Chr05	irgsp1_rep	three_prime_UTR	16577620	16577995	.	+	.	Parent=Os05t0350700-01
Chr05	irgsp1_rep	mRNA	16566619	16577289	.	+	.	ID=Os05t0350700-02;Name=Os05t0350700-02;Locus_id=Os05g0350700;Note=Hypothetical conserved gene.;Transcript_evidence=AK068211 (DDBJ%2C Best hit);ORF_evidence=F2E525 (UniProt);NIAS_FLcDNA=J013146E13;Expression=AK068211;TENOR=Os05t0350700-02;KEGG=Os05t0350700-02
Chr05	irgsp1_rep	five_prime_UTR	16566619	16566756	.	+	.	Parent=Os05t0350700-02
Chr05	irgsp1_rep	five_prime_UTR	16568117	16568249	.	+	.	Parent=Os05t0350700-02
Chr05	irgsp1_rep	CDS	16568250	16568647	.	+	0	Parent=Os05t0350700-02
Chr05	irgsp1_rep	CDS	16568929	16569181	.	+	1	Parent=Os05t0350700-02
Chr05	irgsp1_rep	CDS	16569564	16569862	.	+	0	Parent=Os05t0350700-02
Chr05	irgsp1_rep	CDS	16570124	16570300	.	+	1	Parent=Os05t0350700-02
Chr05	irgsp1_rep	CDS	16570455	16571192	.	+	1	Parent=Os05t0350700-02
Chr05	irgsp1_rep	CDS	16571261	16571355	.	+	1	Parent=Os05t0350700-02
Chr05	irgsp1_rep	CDS	16571434	16571487	.	+	2	Parent=Os05t0350700-02
Chr05	irgsp1_rep	CDS	16571571	16571659	.	+	2	Parent=Os05t0350700-02
Chr05	irgsp1_rep	CDS	16571756	16571821	.	+	0	Parent=Os05t0350700-02
Chr05	irgsp1_rep	CDS	16572046	16572597	.	+	0	Parent=Os05t0350700-02
Chr05	irgsp1_rep	CDS	16573450	16573524	.	+	0	Parent=Os05t0350700-02
Chr05	irgsp1_rep	CDS	16573876	16573946	.	+	0	Parent=Os05t0350700-02
Chr05	irgsp1_rep	CDS	16574027	16574084	.	+	1	Parent=Os05t0350700-02
Chr05	irgsp1_rep	CDS	16576622	16576817	.	+	0	Parent=Os05t0350700-02
Chr05	irgsp1_rep	CDS	16576985	16577289	.	+	2	Parent=Os05t0350700-02
Chr05	irgsp1_rep	mRNA	16582173	16583011	.	-	.	ID=Os05t0350900-01;Name=Os05t0350900-01;Locus_id=Os05g0350900;Note=Hypothetical conserved gene.;Transcript_evidence=AK288128 (DDBJ%2C Best hit);ORF_evidence=NP_001055277.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J080093D18;TENOR=Os05t0350900-01;KEGG=Os05t0350900-01
Chr05	irgsp1_rep	CDS	16582376	16583011	.	-	0	Parent=Os05t0350900-01
Chr05	irgsp1_rep	three_prime_UTR	16582173	16582375	.	-	.	Parent=Os05t0350900-01
Chr05	irgsp1_rep	mRNA	16600698	16601813	.	-	.	ID=Os05t0351200-00;Name=Os05t0351200-00;Locus_id=Os05g0351200;CGSNL Gene Symbol=ERF117;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 117;Oryzabase Gene Symbol Synonym(s)=OsERF#117%2C OsERF117%2C AP2/EREBP#150%2C AP2/EREBP150%2C OsABI4;Oryzabase Gene Name Synonym(s)=ethylene response factor 117%2C APETALA2/ethylene-responsive element binding protein 150;Note=Similar to AP2 domain transcription factor.;Transcript_evidence=EU941236 (DDBJ);ORF_evidence=C7J2Z1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);Oryzabase=10612;TENOR=Os05t0351200-00;KEGG=Os05t0351200-00
Chr05	irgsp1_rep	CDS	16601004	16601813	.	-	0	Parent=Os05t0351200-00
Chr05	irgsp1_rep	three_prime_UTR	16600698	16601003	.	-	.	Parent=Os05t0351200-00
Chr05	irgsp1_rep	mRNA	16622355	16625788	.	-	.	ID=Os05t0351500-01;Name=Os05t0351500-01;Locus_id=Os05g0351500;Note=Sgf11%2C transcriptional regulation family protein.;Transcript_evidence=AK108857 (DDBJ%2C Best hit);ORF_evidence=NP_001144045.1 (RefSeq);InterPro=Sgf11%2C transcriptional regulation (IPR013246);NIAS_FLcDNA=002-152-B03;Expression=AK108857;TENOR=Os05t0351500-01;KEGG=Os05t0351500-01
Chr05	irgsp1_rep	five_prime_UTR	16625491	16625788	.	-	.	Parent=Os05t0351500-01
Chr05	irgsp1_rep	CDS	16625449	16625490	.	-	0	Parent=Os05t0351500-01
Chr05	irgsp1_rep	CDS	16625057	16625377	.	-	0	Parent=Os05t0351500-01
Chr05	irgsp1_rep	CDS	16622728	16622928	.	-	0	Parent=Os05t0351500-01
Chr05	irgsp1_rep	three_prime_UTR	16622355	16622727	.	-	.	Parent=Os05t0351500-01
Chr05	irgsp1_rep	mRNA	16662824	16666995	.	+	.	ID=Os05t0352700-00;Name=Os05t0352700-00;Locus_id=Os05g0352700;Note=Hypothetical conserved gene.;Transcript_evidence=AK250298 (DDBJ);ORF_evidence=B8AX23 (UniProt);TENOR=Os05t0352700-00;KEGG=Os05t0352700-00
Chr05	irgsp1_rep	five_prime_UTR	16662824	16662828	.	+	.	Parent=Os05t0352700-00
Chr05	irgsp1_rep	CDS	16662829	16663451	.	+	0	Parent=Os05t0352700-00
Chr05	irgsp1_rep	CDS	16663518	16663587	.	+	1	Parent=Os05t0352700-00
Chr05	irgsp1_rep	three_prime_UTR	16663588	16664087	.	+	.	Parent=Os05t0352700-00
Chr05	irgsp1_rep	three_prime_UTR	16664175	16664328	.	+	.	Parent=Os05t0352700-00
Chr05	irgsp1_rep	three_prime_UTR	16665653	16665777	.	+	.	Parent=Os05t0352700-00
Chr05	irgsp1_rep	three_prime_UTR	16666565	16666995	.	+	.	Parent=Os05t0352700-00
Chr05	irgsp1_rep	mRNA	16669918	16671903	.	+	.	ID=Os05t0352750-00;Name=Os05t0352750-00;Locus_id=Os05g0352750;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=BT035948 (DDBJ);ORF_evidence=Q5W770 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);TENOR=Os05t0352750-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	16669918	16670992	.	+	0	Parent=Os05t0352750-00
Chr05	irgsp1_rep	CDS	16671056	16671329	.	+	2	Parent=Os05t0352750-00
Chr05	irgsp1_rep	CDS	16671452	16671497	.	+	1	Parent=Os05t0352750-00
Chr05	irgsp1_rep	three_prime_UTR	16671498	16671903	.	+	.	Parent=Os05t0352750-00
Chr05	irgsp1_rep	mRNA	16672595	16678145	.	-	.	ID=Os05t0352800-01;Name=Os05t0352800-01;Locus_id=Os05g0352800;Note=Conserved hypothetical protein.;Transcript_evidence=AK071056 (DDBJ%2C Best hit);ORF_evidence=A2Y3K6 (UniProt);NIAS_FLcDNA=J023075K24;Expression=AK071056;TENOR=Os05t0352800-01;KEGG=Os05t0352800-01
Chr05	irgsp1_rep	five_prime_UTR	16677874	16678145	.	-	.	Parent=Os05t0352800-01
Chr05	irgsp1_rep	five_prime_UTR	16675344	16675363	.	-	.	Parent=Os05t0352800-01
Chr05	irgsp1_rep	CDS	16675299	16675343	.	-	0	Parent=Os05t0352800-01
Chr05	irgsp1_rep	CDS	16674519	16674632	.	-	0	Parent=Os05t0352800-01
Chr05	irgsp1_rep	CDS	16672872	16672970	.	-	0	Parent=Os05t0352800-01
Chr05	irgsp1_rep	three_prime_UTR	16672595	16672871	.	-	.	Parent=Os05t0352800-01
Chr05	irgsp1_rep	mRNA	16680484	16681373	.	+	.	ID=Os05t0353100-00;Name=Os05t0353100-00;Locus_id=Os05g0353100;Note=Hypothetical conserved gene.;Transcript_evidence=BT033254 (DDBJ);ORF_evidence=Q5W768 (UniProt);TENOR=Os05t0353100-00;KEGG=Os05t0353100-00
Chr05	irgsp1_rep	five_prime_UTR	16680484	16680497	.	+	.	Parent=Os05t0353100-00
Chr05	irgsp1_rep	CDS	16680498	16681373	.	+	0	Parent=Os05t0353100-00
Chr05	irgsp1_rep	mRNA	16686972	16690961	.	-	.	ID=Os05t0353200-00;Name=Os05t0353200-00;Locus_id=Os05g0353200;Note=Hypothetical protein.;Transcript_evidence=tplb0037j11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0353200-00
Chr05	irgsp1_rep	five_prime_UTR	16690410	16690961	.	-	.	Parent=Os05t0353200-00
Chr05	irgsp1_rep	CDS	16690089	16690409	.	-	0	Parent=Os05t0353200-00
Chr05	irgsp1_rep	three_prime_UTR	16689914	16690088	.	-	.	Parent=Os05t0353200-00
Chr05	irgsp1_rep	three_prime_UTR	16686972	16687752	.	-	.	Parent=Os05t0353200-00
Chr05	irgsp1_rep	mRNA	16686998	16690968	.	+	.	ID=Os05t0353300-00;Name=Os05t0353300-00;Locus_id=Os05g0353300;Note=Pentatricopeptide repeat containing protein.;Transcript_evidence=AK357780 (DDBJ);ORF_evidence=XP_002879249.1 (RefSeq);TENOR=Os05t0353300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	16686998	16687047	.	+	.	Parent=Os05t0353300-00
Chr05	irgsp1_rep	CDS	16687048	16687740	.	+	0	Parent=Os05t0353300-00
Chr05	irgsp1_rep	CDS	16689899	16690672	.	+	0	Parent=Os05t0353300-00
Chr05	irgsp1_rep	three_prime_UTR	16690673	16690968	.	+	.	Parent=Os05t0353300-00
Chr05	irgsp1_rep	mRNA	16696800	16701565	.	+	.	ID=Os05t0353400-01;Name=Os05t0353400-01;Locus_id=Os05g0353400;Oryzabase Gene Symbol Synonym(s)=OsImpbeta1%2C OsImp beta 1;Oryzabase Gene Name Synonym(s)=beta subunit of importin%2C importin beta%2C importin beta 1%2C importin beta1;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK065625 (DDBJ%2C Best hit);ORF_evidence=Q8GTC5 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Molecular Function: binding (GO:0005488),Molecular Function: protein transporter activity (GO:0008565);InterPro=Importin-beta%2C N-terminal (IPR001494),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013029L11;Oryzabase=11574;Expression=AK065625;TENOR=Os05t0353400-01;KEGG=Os05t0353400-01
Chr05	irgsp1_rep	five_prime_UTR	16696800	16697080	.	+	.	Parent=Os05t0353400-01
Chr05	irgsp1_rep	five_prime_UTR	16698601	16698611	.	+	.	Parent=Os05t0353400-01
Chr05	irgsp1_rep	CDS	16698612	16701022	.	+	0	Parent=Os05t0353400-01
Chr05	irgsp1_rep	CDS	16701120	16701315	.	+	1	Parent=Os05t0353400-01
Chr05	irgsp1_rep	three_prime_UTR	16701316	16701565	.	+	.	Parent=Os05t0353400-01
Chr05	irgsp1_rep	mRNA	16699528	16701565	.	+	.	ID=Os05t0353400-02;Name=Os05t0353400-02;Locus_id=Os05g0353400;Oryzabase Gene Symbol Synonym(s)=OsImpbeta1%2C OsImp beta 1;Oryzabase Gene Name Synonym(s)=beta subunit of importin%2C importin beta%2C importin beta 1%2C importin beta1;Note=Similar to Importin beta-like protein (Fragment).;Transcript_evidence=AK060810 (DDBJ%2C Best hit);ORF_evidence=Q8GTC5 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=HEAT (IPR000357),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=001-033-G12;Oryzabase=11574;Expression=AK060810;TENOR=Os05t0353400-02;KEGG=Os05t0353400-02
Chr05	irgsp1_rep	five_prime_UTR	16699528	16699529	.	+	.	Parent=Os05t0353400-02
Chr05	irgsp1_rep	CDS	16699530	16701083	.	+	0	Parent=Os05t0353400-02
Chr05	irgsp1_rep	three_prime_UTR	16701084	16701565	.	+	.	Parent=Os05t0353400-02
Chr05	irgsp1_rep	mRNA	16698595	16701442	.	-	.	ID=Os05t0353450-00;Name=Os05t0353450-00;Locus_id=Os05g0353450;Note=Hypothetical protein.;Transcript_evidence=tplb0055o07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0353450-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	16701100	16701442	.	-	.	Parent=Os05t0353450-00
Chr05	irgsp1_rep	five_prime_UTR	16699932	16701004	.	-	.	Parent=Os05t0353450-00
Chr05	irgsp1_rep	CDS	16699596	16699931	.	-	0	Parent=Os05t0353450-00
Chr05	irgsp1_rep	three_prime_UTR	16698595	16699595	.	-	.	Parent=Os05t0353450-00
Chr05	irgsp1_rep	mRNA	16702120	16704232	.	-	.	ID=Os05t0353500-01;Name=Os05t0353500-01;Locus_id=Os05g0353500;Note=Similar to ATP binding protein.;Transcript_evidence=AK287883 (DDBJ%2C Best hit);ORF_evidence=NP_001147491.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J065207J15;TENOR=Os05t0353500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	16704101	16704232	.	-	.	Parent=Os05t0353500-01
Chr05	irgsp1_rep	CDS	16703465	16704100	.	-	0	Parent=Os05t0353500-01
Chr05	irgsp1_rep	CDS	16702956	16703088	.	-	0	Parent=Os05t0353500-01
Chr05	irgsp1_rep	CDS	16702280	16702857	.	-	2	Parent=Os05t0353500-01
Chr05	irgsp1_rep	three_prime_UTR	16702120	16702279	.	-	.	Parent=Os05t0353500-01
Chr05	irgsp1_rep	mRNA	16717739	16718768	.	-	.	ID=Os05t0353600-00;Name=Os05t0353600-00;Locus_id=Os05g0353600;Oryzabase Gene Symbol Synonym(s)=OsGRL10%2C GRL10%2C OsSTA146%2C STA146;Oryzabase Gene Name Synonym(s)=GRX-like protein 10%2C glutaredoxin-like protein 10;Note=Thioredoxin fold domain containing protein.;Transcript_evidence=EU972947 (DDBJ);ORF_evidence=NP_001147521.1 (RefSeq);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin (IPR002109),Thioredoxin-like fold (IPR012336);Oryzabase=13600;TENOR=Os05t0353600-00;KEGG=Os05t0353600-00
Chr05	irgsp1_rep	CDS	16717761	16718768	.	-	0	Parent=Os05t0353600-00
Chr05	irgsp1_rep	three_prime_UTR	16717739	16717760	.	-	.	Parent=Os05t0353600-00
Chr05	irgsp1_rep	mRNA	16735951	16739911	.	+	.	ID=Os05t0354075-00;Name=Os05t0354075-00;Locus_id=Os05g0354075;Note=Conserved hypothetical protein.;Transcript_evidence=FP092724 (DDBJ);ORF_evidence=Q7XKR5 (UniProt);TENOR=Os05t0354075-00
Chr05	irgsp1_rep	five_prime_UTR	16735951	16736215	.	+	.	Parent=Os05t0354075-00
Chr05	irgsp1_rep	five_prime_UTR	16739196	16739259	.	+	.	Parent=Os05t0354075-00
Chr05	irgsp1_rep	CDS	16739260	16739526	.	+	0	Parent=Os05t0354075-00
Chr05	irgsp1_rep	three_prime_UTR	16739527	16739610	.	+	.	Parent=Os05t0354075-00
Chr05	irgsp1_rep	three_prime_UTR	16739795	16739911	.	+	.	Parent=Os05t0354075-00
Chr05	irgsp1_rep	mRNA	16762807	16774653	.	+	.	ID=Os05t0354300-01;Name=Os05t0354300-01;Locus_id=Os05g0354300;Oryzabase Gene Symbol Synonym(s)=APC1%2C OsAPC1;Oryzabase Gene Name Synonym(s)=ANAPHASE PROMOTING COMPLEX 1;Note=Similar to Meiotic check point regulator-like protein.;Transcript_evidence=AK063429 (DDBJ%2C Best hit);ORF_evidence=B9FP30 (UniProt);NIAS_FLcDNA=001-115-D08;Oryzabase=21055;Expression=AK063429;TENOR=Os05t0354300-01;KEGG=Os05t0354300-01
Chr05	irgsp1_rep	five_prime_UTR	16762807	16762808	.	+	.	Parent=Os05t0354300-01
Chr05	irgsp1_rep	CDS	16762809	16762877	.	+	0	Parent=Os05t0354300-01
Chr05	irgsp1_rep	CDS	16763216	16763308	.	+	0	Parent=Os05t0354300-01
Chr05	irgsp1_rep	CDS	16763431	16763490	.	+	0	Parent=Os05t0354300-01
Chr05	irgsp1_rep	CDS	16764047	16764145	.	+	0	Parent=Os05t0354300-01
Chr05	irgsp1_rep	CDS	16764295	16764435	.	+	0	Parent=Os05t0354300-01
Chr05	irgsp1_rep	CDS	16764672	16764752	.	+	0	Parent=Os05t0354300-01
Chr05	irgsp1_rep	CDS	16765360	16765431	.	+	0	Parent=Os05t0354300-01
Chr05	irgsp1_rep	CDS	16766625	16766696	.	+	0	Parent=Os05t0354300-01
Chr05	irgsp1_rep	CDS	16767548	16767641	.	+	0	Parent=Os05t0354300-01
Chr05	irgsp1_rep	CDS	16767722	16767804	.	+	2	Parent=Os05t0354300-01
Chr05	irgsp1_rep	CDS	16768379	16768435	.	+	0	Parent=Os05t0354300-01
Chr05	irgsp1_rep	CDS	16768520	16768597	.	+	0	Parent=Os05t0354300-01
Chr05	irgsp1_rep	CDS	16768701	16768822	.	+	0	Parent=Os05t0354300-01
Chr05	irgsp1_rep	CDS	16768928	16769088	.	+	1	Parent=Os05t0354300-01
Chr05	irgsp1_rep	CDS	16769884	16769960	.	+	2	Parent=Os05t0354300-01
Chr05	irgsp1_rep	CDS	16770035	16770148	.	+	0	Parent=Os05t0354300-01
Chr05	irgsp1_rep	CDS	16770322	16770423	.	+	0	Parent=Os05t0354300-01
Chr05	irgsp1_rep	CDS	16770902	16771042	.	+	0	Parent=Os05t0354300-01
Chr05	irgsp1_rep	CDS	16771401	16771574	.	+	0	Parent=Os05t0354300-01
Chr05	irgsp1_rep	CDS	16772465	16772528	.	+	0	Parent=Os05t0354300-01
Chr05	irgsp1_rep	CDS	16772602	16772741	.	+	2	Parent=Os05t0354300-01
Chr05	irgsp1_rep	CDS	16772834	16772979	.	+	0	Parent=Os05t0354300-01
Chr05	irgsp1_rep	CDS	16773108	16773189	.	+	1	Parent=Os05t0354300-01
Chr05	irgsp1_rep	CDS	16773278	16773376	.	+	0	Parent=Os05t0354300-01
Chr05	irgsp1_rep	CDS	16773873	16774268	.	+	0	Parent=Os05t0354300-01
Chr05	irgsp1_rep	three_prime_UTR	16774269	16774653	.	+	.	Parent=Os05t0354300-01
Chr05	irgsp1_rep	mRNA	16781887	16786652	.	-	.	ID=Os05t0354400-01;Name=Os05t0354400-01;Locus_id=Os05g0354400;CGSNL Gene Symbol=XOAT5;CGSNL Gene Name=XYLAN O-ACETYLTRANSFERASE 5;Oryzabase Gene Symbol Synonym(s)=OsTBL13%2C TBL13%2C OsXOAT5;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 13%2C xylan O-acetyltransferase 5;Note=Similar to ESK1 (ESKIMO 1).;Transcript_evidence=AK065144 (DDBJ%2C Best hit);ORF_evidence=NP_191158.1 (RefSeq);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=J013002A20;Oryzabase=21468;TENOR=Os05t0354400-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	16786454	16786652	.	-	.	Parent=Os05t0354400-01
Chr05	irgsp1_rep	CDS	16786208	16786453	.	-	0	Parent=Os05t0354400-01
Chr05	irgsp1_rep	CDS	16785692	16786113	.	-	0	Parent=Os05t0354400-01
Chr05	irgsp1_rep	CDS	16783919	16784090	.	-	1	Parent=Os05t0354400-01
Chr05	irgsp1_rep	CDS	16783470	16783669	.	-	0	Parent=Os05t0354400-01
Chr05	irgsp1_rep	CDS	16782938	16783099	.	-	1	Parent=Os05t0354400-01
Chr05	irgsp1_rep	CDS	16782303	16782696	.	-	1	Parent=Os05t0354400-01
Chr05	irgsp1_rep	three_prime_UTR	16781887	16782302	.	-	.	Parent=Os05t0354400-01
Chr05	irgsp1_rep	mRNA	16781887	16783110	.	-	.	ID=Os05t0354400-02;Name=Os05t0354400-02;Locus_id=Os05g0354400;CGSNL Gene Symbol=XOAT5;CGSNL Gene Name=XYLAN O-ACETYLTRANSFERASE 5;Oryzabase Gene Symbol Synonym(s)=OsTBL13%2C TBL13%2C OsXOAT5;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 13%2C xylan O-acetyltransferase 5;Note=Similar to ESK1 (ESKIMO 1).;Transcript_evidence=AK061810 (DDBJ%2C Best hit);ORF_evidence=NP_191158.1 (RefSeq);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=001-040-A11;Oryzabase=21468;TENOR=Os05t0354400-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	16782938	16783110	.	-	0	Parent=Os05t0354400-02
Chr05	irgsp1_rep	CDS	16782303	16782696	.	-	1	Parent=Os05t0354400-02
Chr05	irgsp1_rep	three_prime_UTR	16781887	16782302	.	-	.	Parent=Os05t0354400-02
Chr05	irgsp1_rep	mRNA	16830126	16840001	.	+	.	ID=Os05t0355133-01;Name=Os05t0355133-01;Locus_id=Os05g0355133;Note=Hypothetical conserved gene.;Transcript_evidence=AK242134 (DDBJ%2C Best hit);ORF_evidence=B9FP35 (UniProt);NIAS_FLcDNA=J075149H14;TENOR=Os05t0355133-01;KEGG=Os05t0355133-01
Chr05	irgsp1_rep	five_prime_UTR	16830126	16830298	.	+	.	Parent=Os05t0355133-01
Chr05	irgsp1_rep	CDS	16830299	16830429	.	+	0	Parent=Os05t0355133-01
Chr05	irgsp1_rep	CDS	16831033	16831150	.	+	1	Parent=Os05t0355133-01
Chr05	irgsp1_rep	CDS	16831746	16831842	.	+	0	Parent=Os05t0355133-01
Chr05	irgsp1_rep	CDS	16835592	16835698	.	+	2	Parent=Os05t0355133-01
Chr05	irgsp1_rep	CDS	16835942	16836061	.	+	0	Parent=Os05t0355133-01
Chr05	irgsp1_rep	CDS	16836257	16836410	.	+	0	Parent=Os05t0355133-01
Chr05	irgsp1_rep	CDS	16836703	16836763	.	+	2	Parent=Os05t0355133-01
Chr05	irgsp1_rep	CDS	16836883	16837247	.	+	1	Parent=Os05t0355133-01
Chr05	irgsp1_rep	CDS	16837341	16838949	.	+	2	Parent=Os05t0355133-01
Chr05	irgsp1_rep	CDS	16839163	16839406	.	+	1	Parent=Os05t0355133-01
Chr05	irgsp1_rep	three_prime_UTR	16839407	16839594	.	+	.	Parent=Os05t0355133-01
Chr05	irgsp1_rep	three_prime_UTR	16839782	16840001	.	+	.	Parent=Os05t0355133-01
Chr05	irgsp1_rep	mRNA	16845905	16847857	.	+	.	ID=Os05t0355200-00;Name=Os05t0355200-00;Locus_id=Os05g0355200;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=EU967052 (DDBJ);ORF_evidence=NP_001055288.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os05t0355200-00;KEGG=Os05t0355200-00
Chr05	irgsp1_rep	CDS	16845905	16847803	.	+	0	Parent=Os05t0355200-00
Chr05	irgsp1_rep	three_prime_UTR	16847804	16847857	.	+	.	Parent=Os05t0355200-00
Chr05	irgsp1_rep	mRNA	16850695	16853504	.	-	.	ID=Os05t0355300-01;Name=Os05t0355300-01;Locus_id=Os05g0355300;Oryzabase Gene Symbol Synonym(s)=OsRFPV-2;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPV-2%2C RING-V protein 2;Note=Similar to PIT1.;Transcript_evidence=AK287449 (DDBJ%2C Best hit);ORF_evidence=NP_001150891.1 (RefSeq);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-CH-type (IPR011016),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Protein of unknown function DUF3675 (IPR022143);NIAS_FLcDNA=J043017C23;Oryzabase=11801;TENOR=Os05t0355300-01;KEGG=Os05t0355300-01
Chr05	irgsp1_rep	five_prime_UTR	16853420	16853504	.	-	.	Parent=Os05t0355300-01
Chr05	irgsp1_rep	CDS	16853237	16853419	.	-	0	Parent=Os05t0355300-01
Chr05	irgsp1_rep	CDS	16852994	16853065	.	-	0	Parent=Os05t0355300-01
Chr05	irgsp1_rep	CDS	16852517	16852584	.	-	0	Parent=Os05t0355300-01
Chr05	irgsp1_rep	CDS	16851429	16851546	.	-	1	Parent=Os05t0355300-01
Chr05	irgsp1_rep	CDS	16851254	16851337	.	-	0	Parent=Os05t0355300-01
Chr05	irgsp1_rep	CDS	16851073	16851180	.	-	0	Parent=Os05t0355300-01
Chr05	irgsp1_rep	CDS	16850903	16850986	.	-	0	Parent=Os05t0355300-01
Chr05	irgsp1_rep	three_prime_UTR	16850695	16850902	.	-	.	Parent=Os05t0355300-01
Chr05	irgsp1_rep	mRNA	16859727	16860956	.	+	.	ID=Os05t0355400-01;Name=Os05t0355400-01;Locus_id=Os05g0355400;Oryzabase Gene Symbol Synonym(s)=UspA%2C OsUspA;Oryzabase Gene Name Synonym(s)=universal stress-induced protein A;Note=UspA domain containing protein.;Transcript_evidence=AK070138 (DDBJ%2C Best hit);ORF_evidence=B9FH86 (UniProt);GO=Biological Process: response to stress (GO:0006950);InterPro=UspA (IPR006016),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J023041H15;Oryzabase=9501;TENOR=Os05t0355400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	16859727	16859826	.	+	.	Parent=Os05t0355400-01
Chr05	irgsp1_rep	CDS	16859827	16860159	.	+	0	Parent=Os05t0355400-01
Chr05	irgsp1_rep	three_prime_UTR	16860160	16860956	.	+	.	Parent=Os05t0355400-01
Chr05	irgsp1_rep	mRNA	16860342	16860799	.	-	.	ID=Os05t0355450-01;Name=Os05t0355450-01;Locus_id=Os05g0355450;Note=Hypothetical protein.;Transcript_evidence=AK063864 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-122-E02;Expression=AK063864;TENOR=Os05t0355450-01;KEGG=Os05t0355450-01
Chr05	irgsp1_rep	five_prime_UTR	16860650	16860799	.	-	.	Parent=Os05t0355450-01
Chr05	irgsp1_rep	CDS	16860407	16860649	.	-	0	Parent=Os05t0355450-01
Chr05	irgsp1_rep	three_prime_UTR	16860342	16860406	.	-	.	Parent=Os05t0355450-01
Chr05	irgsp1_rep	mRNA	16861470	16862900	.	-	.	ID=Os05t0355500-01;Name=Os05t0355500-01;Locus_id=Os05g0355500;Note=Similar to Ribosomal protein L29.;Transcript_evidence=AK105054 (DDBJ%2C Best hit);ORF_evidence=NP_001042836.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L29e (IPR002673);NIAS_FLcDNA=001-042-E09;Expression=AK105054;TENOR=Os05t0355500-01;KEGG=Os05t0355500-01
Chr05	irgsp1_rep	five_prime_UTR	16862842	16862900	.	-	.	Parent=Os05t0355500-01
Chr05	irgsp1_rep	five_prime_UTR	16862701	16862731	.	-	.	Parent=Os05t0355500-01
Chr05	irgsp1_rep	CDS	16862599	16862700	.	-	0	Parent=Os05t0355500-01
Chr05	irgsp1_rep	CDS	16861703	16861783	.	-	0	Parent=Os05t0355500-01
Chr05	irgsp1_rep	three_prime_UTR	16861470	16861702	.	-	.	Parent=Os05t0355500-01
Chr05	irgsp1_rep	mRNA	16867985	16870785	.	+	.	ID=Os05t0355700-00;Name=Os05t0355700-00;Locus_id=Os05g0355700;Note=Conserved hypothetical protein.;Transcript_evidence=FP098712 (DDBJ);ORF_evidence=B8AX33 (UniProt);TENOR=Os05t0355700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	16867985	16868415	.	+	.	Parent=Os05t0355700-00
Chr05	irgsp1_rep	CDS	16868416	16868503	.	+	0	Parent=Os05t0355700-00
Chr05	irgsp1_rep	CDS	16868782	16868879	.	+	2	Parent=Os05t0355700-00
Chr05	irgsp1_rep	CDS	16869934	16870255	.	+	0	Parent=Os05t0355700-00
Chr05	irgsp1_rep	CDS	16870661	16870785	.	+	2	Parent=Os05t0355700-00
Chr05	irgsp1_rep	mRNA	16871732	16872373	.	+	.	ID=Os05t0355800-00;Name=Os05t0355800-00;Locus_id=Os05g0355800;Note=Similar to Lipoxygenase.;Transcript_evidence=DQ658739 (DDBJ);ORF_evidence=Q01J86 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on single donors with incorporation of molecular oxygen%2C incorporation of two atoms of oxygen (GO:0016702),Molecular Function: metal ion binding (GO:0046872);InterPro=Lipoxygenase (IPR000907),Lipoxygenase%2C C-terminal (IPR013819);TENOR=Os05t0355800-00
Chr05	irgsp1_rep	CDS	16871732	16872373	.	+	0	Parent=Os05t0355800-00
Chr05	irgsp1_rep	mRNA	16874881	16876813	.	+	.	ID=Os05t0355900-01;Name=Os05t0355900-01;Locus_id=Os05g0355900;Note=Conserved hypothetical protein.;Transcript_evidence=AK063096 (DDBJ%2C Best hit);ORF_evidence=B8AX34 (UniProt);NIAS_FLcDNA=001-111-C01;Expression=AK063096;TENOR=Os05t0355900-01;KEGG=Os05t0355900-01
Chr05	irgsp1_rep	five_prime_UTR	16874881	16874957	.	+	.	Parent=Os05t0355900-01
Chr05	irgsp1_rep	CDS	16874958	16875045	.	+	0	Parent=Os05t0355900-01
Chr05	irgsp1_rep	CDS	16875237	16875292	.	+	2	Parent=Os05t0355900-01
Chr05	irgsp1_rep	CDS	16875428	16875656	.	+	0	Parent=Os05t0355900-01
Chr05	irgsp1_rep	CDS	16876446	16876702	.	+	2	Parent=Os05t0355900-01
Chr05	irgsp1_rep	three_prime_UTR	16876703	16876813	.	+	.	Parent=Os05t0355900-01
Chr05	irgsp1_rep	mRNA	16885806	16886372	.	-	.	ID=Os05t0356201-00;Name=Os05t0356201-00;Locus_id=Os05g0356201;CGSNL Gene Symbol=AP2/EREBP92;CGSNL Gene Name=APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 92;Oryzabase Gene Symbol Synonym(s)=AP2/EREBP#092;Oryzabase Gene Name Synonym(s)=APETALA2/ethylene-responsive element binding protein 92;Note=Similar to LIPLESS2.;Transcript_evidence=AJ577368 (DDBJ);ORF_evidence=Q84U23 (UniProt);Oryzabase=10659;TENOR=Os05t0356201-00;KEGG=Os05t0356201-00
Chr05	irgsp1_rep	CDS	16885866	16886372	.	-	0	Parent=Os05t0356201-00
Chr05	irgsp1_rep	three_prime_UTR	16885806	16885865	.	-	.	Parent=Os05t0356201-00
Chr05	irgsp1_rep	mRNA	16887746	16888069	.	+	.	ID=Os05t0356500-00;Name=Os05t0356500-00;Locus_id=Os05g0356500;Note=Hypothetical conserved gene.;Transcript_evidence=AB332071 (DDBJ%2C Best hit);ORF_evidence=B8AX35 (UniProt);TENOR=Os05t0356500-00;KEGG=Os05t0356500-00
Chr05	irgsp1_rep	CDS	16887746	16888069	.	+	0	Parent=Os05t0356500-00
Chr05	irgsp1_rep	mRNA	16889820	16890164	.	+	.	ID=Os05t0356600-00;Name=Os05t0356600-00;Locus_id=Os05g0356600;Note=Hypothetical conserved gene.;Transcript_evidence=AB332072 (DDBJ%2C Best hit);ORF_evidence=A2Y3M6 (UniProt);TENOR=Os05t0356600-00;KEGG=Os05t0356600-00
Chr05	irgsp1_rep	CDS	16889820	16890164	.	+	0	Parent=Os05t0356600-00
Chr05	irgsp1_rep	mRNA	16897434	16899135	.	-	.	ID=Os05t0356700-01;Name=Os05t0356700-01;Locus_id=Os05g0356700;CGSNL Gene Symbol=XOAT9;CGSNL Gene Name=XYLAN O-ACETYLTRANSFERASE 9;Oryzabase Gene Symbol Synonym(s)=OsTBL4%2C TBL4%2C OsXOAT9;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 4%2C xylan O-acetyltransferase 9;Note=Protein of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=AK071031 (DDBJ%2C Best hit);ORF_evidence=XP_002884829.1 (RefSeq);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=J023076I22;Oryzabase=21459;Expression=AK071031;TENOR=Os05t0356700-01;KEGG=Os05t0356700-01
Chr05	irgsp1_rep	five_prime_UTR	16899104	16899135	.	-	.	Parent=Os05t0356700-01
Chr05	irgsp1_rep	CDS	16898884	16899103	.	-	0	Parent=Os05t0356700-01
Chr05	irgsp1_rep	CDS	16898170	16898797	.	-	2	Parent=Os05t0356700-01
Chr05	irgsp1_rep	CDS	16897587	16898103	.	-	1	Parent=Os05t0356700-01
Chr05	irgsp1_rep	three_prime_UTR	16897434	16897586	.	-	.	Parent=Os05t0356700-01
Chr05	irgsp1_rep	mRNA	16908985	16910051	.	-	.	ID=Os05t0356800-01;Name=Os05t0356800-01;Locus_id=Os05g0356800;Note=Protein of unknown function DUF3511 domain containing protein.;Transcript_evidence=AK121901 (DDBJ%2C Best hit);ORF_evidence=A2Y3M8 (UniProt);InterPro=Protein of unknown function DUF3511 (IPR021899);NIAS_FLcDNA=J033105G24;Expression=AK121901;TENOR=Os05t0356800-01;KEGG=Os05t0356800-01
Chr05	irgsp1_rep	five_prime_UTR	16909989	16910051	.	-	.	Parent=Os05t0356800-01
Chr05	irgsp1_rep	CDS	16909509	16909988	.	-	0	Parent=Os05t0356800-01
Chr05	irgsp1_rep	three_prime_UTR	16908985	16909508	.	-	.	Parent=Os05t0356800-01
Chr05	irgsp1_rep	mRNA	16918923	16925020	.	+	.	ID=Os05t0357100-01;Name=Os05t0357100-01;Locus_id=Os05g0357100;Note=3'-5' exonuclease domain containing protein.;Transcript_evidence=AK102042 (DDBJ%2C Best hit);ORF_evidence=B8AX36 (UniProt);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: 3'-5' exonuclease activity (GO:0008408);InterPro=3'-5' exonuclease (IPR002562),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J033081J05;Expression=AK102042;TENOR=Os05t0357100-01;KEGG=Os05t0357100-01
Chr05	irgsp1_rep	five_prime_UTR	16918923	16919120	.	+	.	Parent=Os05t0357100-01
Chr05	irgsp1_rep	five_prime_UTR	16919840	16919862	.	+	.	Parent=Os05t0357100-01
Chr05	irgsp1_rep	CDS	16919863	16920010	.	+	0	Parent=Os05t0357100-01
Chr05	irgsp1_rep	CDS	16920695	16921376	.	+	2	Parent=Os05t0357100-01
Chr05	irgsp1_rep	CDS	16921469	16921553	.	+	1	Parent=Os05t0357100-01
Chr05	irgsp1_rep	CDS	16922213	16922354	.	+	0	Parent=Os05t0357100-01
Chr05	irgsp1_rep	CDS	16922857	16923041	.	+	2	Parent=Os05t0357100-01
Chr05	irgsp1_rep	CDS	16923477	16923609	.	+	0	Parent=Os05t0357100-01
Chr05	irgsp1_rep	CDS	16923735	16923871	.	+	2	Parent=Os05t0357100-01
Chr05	irgsp1_rep	CDS	16923996	16924070	.	+	0	Parent=Os05t0357100-01
Chr05	irgsp1_rep	CDS	16924526	16924639	.	+	0	Parent=Os05t0357100-01
Chr05	irgsp1_rep	CDS	16924730	16924771	.	+	0	Parent=Os05t0357100-01
Chr05	irgsp1_rep	three_prime_UTR	16924772	16925020	.	+	.	Parent=Os05t0357100-01
Chr05	irgsp1_rep	mRNA	16928160	16932116	.	+	.	ID=Os05t0357200-01;Name=Os05t0357200-01;Locus_id=Os05g0357200;Note=Adenine nucleotide translocator 1 domain containing protein.;Transcript_evidence=AK072064 (DDBJ%2C Best hit),AK064069 (DDBJ%2C Best hit);ORF_evidence=B4FCK3 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial inner membrane (GO:0005743),Molecular Function: binding (GO:0005488);InterPro=Mitochondrial carrier protein (IPR002067),Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J013108O12,001-125-G09;TENOR=Os05t0357200-01
Chr05	irgsp1_rep	five_prime_UTR	16928160	16928526	.	+	.	Parent=Os05t0357200-01
Chr05	irgsp1_rep	CDS	16928527	16928647	.	+	0	Parent=Os05t0357200-01
Chr05	irgsp1_rep	CDS	16928755	16928850	.	+	2	Parent=Os05t0357200-01
Chr05	irgsp1_rep	CDS	16929872	16929978	.	+	2	Parent=Os05t0357200-01
Chr05	irgsp1_rep	CDS	16930192	16930240	.	+	0	Parent=Os05t0357200-01
Chr05	irgsp1_rep	CDS	16930324	16930433	.	+	2	Parent=Os05t0357200-01
Chr05	irgsp1_rep	CDS	16930795	16930889	.	+	0	Parent=Os05t0357200-01
Chr05	irgsp1_rep	CDS	16930990	16931078	.	+	1	Parent=Os05t0357200-01
Chr05	irgsp1_rep	CDS	16931241	16931335	.	+	2	Parent=Os05t0357200-01
Chr05	irgsp1_rep	CDS	16931442	16931690	.	+	0	Parent=Os05t0357200-01
Chr05	irgsp1_rep	three_prime_UTR	16931691	16932116	.	+	.	Parent=Os05t0357200-01
Chr05	irgsp1_rep	mRNA	16954655	16960725	.	+	.	ID=Os05t0357500-00;Name=Os05t0357500-00;Locus_id=Os05g0357500;Note=Similar to Integral membrane protein DUF6 containing protein%2C expressed.;Transcript_evidence=AK372962 (DDBJ);ORF_evidence=Q10A36 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);TENOR=Os05t0357500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	16954655	16954947	.	+	0	Parent=Os05t0357500-00
Chr05	irgsp1_rep	CDS	16956555	16956617	.	+	1	Parent=Os05t0357500-00
Chr05	irgsp1_rep	CDS	16957153	16957269	.	+	1	Parent=Os05t0357500-00
Chr05	irgsp1_rep	CDS	16957539	16957798	.	+	1	Parent=Os05t0357500-00
Chr05	irgsp1_rep	CDS	16958032	16958190	.	+	2	Parent=Os05t0357500-00
Chr05	irgsp1_rep	CDS	16958480	16958631	.	+	2	Parent=Os05t0357500-00
Chr05	irgsp1_rep	CDS	16960603	16960725	.	+	0	Parent=Os05t0357500-00
Chr05	irgsp1_rep	mRNA	16959114	16959822	.	-	.	ID=Os05t0357525-00;Name=Os05t0357525-00;Locus_id=Os05g0357525;Note=Similar to Universal stress protein.;Transcript_evidence=BT036431 (DDBJ);ORF_evidence=B6SNF3 (UniProt);TENOR=Os05t0357525-00
Chr05	irgsp1_rep	five_prime_UTR	16959625	16959822	.	-	.	Parent=Os05t0357525-00
Chr05	irgsp1_rep	CDS	16959420	16959624	.	-	0	Parent=Os05t0357525-00
Chr05	irgsp1_rep	CDS	16959114	16959337	.	-	2	Parent=Os05t0357525-00
Chr05	irgsp1_rep	mRNA	16966090	16971870	.	+	.	ID=Os05t0357600-01;Name=Os05t0357600-01;Locus_id=Os05g0357600;Note=Similar to Developmentally regulated GTP binding protein.;Transcript_evidence=AK105299 (DDBJ%2C Best hit);ORF_evidence=NP_001149923.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=GTP-binding domain%2C HSR1-related (IPR002917),TGS (IPR004095),Small GTP-binding protein domain (IPR005225),GTP1/OBG (IPR006073),GTP1/OBG%2C conserved site (IPR006074),TGS-like (IPR012676);NIAS_FLcDNA=001-116-H10;Expression=AK105299;TENOR=Os05t0357600-01;KEGG=Os05t0357600-01
Chr05	irgsp1_rep	five_prime_UTR	16966090	16966226	.	+	.	Parent=Os05t0357600-01
Chr05	irgsp1_rep	five_prime_UTR	16966600	16966650	.	+	.	Parent=Os05t0357600-01
Chr05	irgsp1_rep	CDS	16966651	16966720	.	+	0	Parent=Os05t0357600-01
Chr05	irgsp1_rep	CDS	16967483	16967550	.	+	2	Parent=Os05t0357600-01
Chr05	irgsp1_rep	CDS	16967784	16967860	.	+	0	Parent=Os05t0357600-01
Chr05	irgsp1_rep	CDS	16968376	16968556	.	+	1	Parent=Os05t0357600-01
Chr05	irgsp1_rep	CDS	16968658	16968714	.	+	0	Parent=Os05t0357600-01
Chr05	irgsp1_rep	CDS	16969648	16969722	.	+	0	Parent=Os05t0357600-01
Chr05	irgsp1_rep	CDS	16970286	16970405	.	+	0	Parent=Os05t0357600-01
Chr05	irgsp1_rep	CDS	16970484	16970647	.	+	0	Parent=Os05t0357600-01
Chr05	irgsp1_rep	CDS	16971079	16971199	.	+	1	Parent=Os05t0357600-01
Chr05	irgsp1_rep	CDS	16971284	16971454	.	+	0	Parent=Os05t0357600-01
Chr05	irgsp1_rep	CDS	16971556	16971651	.	+	0	Parent=Os05t0357600-01
Chr05	irgsp1_rep	three_prime_UTR	16971652	16971870	.	+	.	Parent=Os05t0357600-01
Chr05	irgsp1_rep	mRNA	16966118	16972086	.	+	.	ID=Os05t0357600-02;Name=Os05t0357600-02;Locus_id=Os05g0357600;Note=Similar to Developmentally regulated GTP binding protein.;Transcript_evidence=AK111540 (DDBJ%2C Best hit);ORF_evidence=NP_001149923.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=GTP-binding domain%2C HSR1-related (IPR002917),TGS (IPR004095),Small GTP-binding protein domain (IPR005225),GTP1/OBG (IPR006073),GTP1/OBG%2C conserved site (IPR006074),TGS-like (IPR012676);NIAS_FLcDNA=J013037H01;Expression=AK111540;TENOR=Os05t0357600-02;KEGG=Os05t0357600-02
Chr05	irgsp1_rep	five_prime_UTR	16966118	16966226	.	+	.	Parent=Os05t0357600-02
Chr05	irgsp1_rep	five_prime_UTR	16966600	16966650	.	+	.	Parent=Os05t0357600-02
Chr05	irgsp1_rep	CDS	16966651	16966720	.	+	0	Parent=Os05t0357600-02
Chr05	irgsp1_rep	CDS	16967483	16967550	.	+	2	Parent=Os05t0357600-02
Chr05	irgsp1_rep	CDS	16967784	16967860	.	+	0	Parent=Os05t0357600-02
Chr05	irgsp1_rep	CDS	16968376	16968556	.	+	1	Parent=Os05t0357600-02
Chr05	irgsp1_rep	CDS	16968658	16968714	.	+	0	Parent=Os05t0357600-02
Chr05	irgsp1_rep	CDS	16969648	16969722	.	+	0	Parent=Os05t0357600-02
Chr05	irgsp1_rep	CDS	16970286	16970405	.	+	0	Parent=Os05t0357600-02
Chr05	irgsp1_rep	CDS	16970484	16970647	.	+	0	Parent=Os05t0357600-02
Chr05	irgsp1_rep	CDS	16971079	16971199	.	+	1	Parent=Os05t0357600-02
Chr05	irgsp1_rep	CDS	16971284	16971454	.	+	0	Parent=Os05t0357600-02
Chr05	irgsp1_rep	CDS	16971556	16971651	.	+	0	Parent=Os05t0357600-02
Chr05	irgsp1_rep	three_prime_UTR	16971652	16972086	.	+	.	Parent=Os05t0357600-02
Chr05	irgsp1_rep	mRNA	16968680	16971444	.	+	.	ID=Os05t0357600-03;Name=Os05t0357600-03;Locus_id=Os05g0357600;Note=Similar to developmentally-regulated GTP-binding protein 2.;Transcript_evidence=AK112055 (DDBJ%2C Best hit);ORF_evidence=NP_001149923.1 (RefSeq);InterPro=TGS (IPR004095),TGS-like (IPR012676);NIAS_FLcDNA=001-109-E05;TENOR=Os05t0357600-03
Chr05	irgsp1_rep	five_prime_UTR	16968680	16968681	.	+	.	Parent=Os05t0357600-03
Chr05	irgsp1_rep	CDS	16968682	16968714	.	+	0	Parent=Os05t0357600-03
Chr05	irgsp1_rep	CDS	16969648	16969722	.	+	0	Parent=Os05t0357600-03
Chr05	irgsp1_rep	CDS	16970286	16970405	.	+	0	Parent=Os05t0357600-03
Chr05	irgsp1_rep	CDS	16970484	16970647	.	+	0	Parent=Os05t0357600-03
Chr05	irgsp1_rep	CDS	16971079	16971199	.	+	1	Parent=Os05t0357600-03
Chr05	irgsp1_rep	CDS	16971284	16971444	.	+	0	Parent=Os05t0357600-03
Chr05	irgsp1_rep	mRNA	16972974	16975853	.	+	.	ID=Os05t0357700-01;Name=Os05t0357700-01;Locus_id=Os05g0357700;Note=Similar to CAAX prenyl protease 2.;Transcript_evidence=AK240852 (DDBJ%2C Best hit);ORF_evidence=B6TS29 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=CAAX amino terminal protease (IPR003675);NIAS_FLcDNA=J065021D19;TENOR=Os05t0357700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	16972974	16973276	.	+	.	Parent=Os05t0357700-01
Chr05	irgsp1_rep	five_prime_UTR	16973340	16973428	.	+	.	Parent=Os05t0357700-01
Chr05	irgsp1_rep	five_prime_UTR	16973503	16973517	.	+	.	Parent=Os05t0357700-01
Chr05	irgsp1_rep	CDS	16973518	16973745	.	+	0	Parent=Os05t0357700-01
Chr05	irgsp1_rep	CDS	16974012	16974123	.	+	0	Parent=Os05t0357700-01
Chr05	irgsp1_rep	CDS	16974325	16974393	.	+	2	Parent=Os05t0357700-01
Chr05	irgsp1_rep	CDS	16974871	16974933	.	+	2	Parent=Os05t0357700-01
Chr05	irgsp1_rep	CDS	16975295	16975375	.	+	2	Parent=Os05t0357700-01
Chr05	irgsp1_rep	CDS	16975471	16975604	.	+	2	Parent=Os05t0357700-01
Chr05	irgsp1_rep	three_prime_UTR	16975605	16975853	.	+	.	Parent=Os05t0357700-01
Chr05	irgsp1_rep	mRNA	16977838	16982184	.	-	.	ID=Os05t0357800-01;Name=Os05t0357800-01;Locus_id=Os05g0357800;Note=Phospholipid/glycerol acyltransferase domain containing protein.;Transcript_evidence=AK060514 (DDBJ%2C Best hit);ORF_evidence=NP_001151069.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Phospholipid/glycerol acyltransferase (IPR002123);NIAS_FLcDNA=001-019-F05;Expression=AK060514;TENOR=Os05t0357800-01;KEGG=Os05t0357800-01
Chr05	irgsp1_rep	five_prime_UTR	16982135	16982184	.	-	.	Parent=Os05t0357800-01
Chr05	irgsp1_rep	CDS	16981595	16982134	.	-	0	Parent=Os05t0357800-01
Chr05	irgsp1_rep	CDS	16980495	16980614	.	-	0	Parent=Os05t0357800-01
Chr05	irgsp1_rep	CDS	16980352	16980389	.	-	0	Parent=Os05t0357800-01
Chr05	irgsp1_rep	CDS	16979903	16979967	.	-	1	Parent=Os05t0357800-01
Chr05	irgsp1_rep	CDS	16979352	16979420	.	-	2	Parent=Os05t0357800-01
Chr05	irgsp1_rep	CDS	16978848	16978981	.	-	2	Parent=Os05t0357800-01
Chr05	irgsp1_rep	CDS	16978309	16978449	.	-	0	Parent=Os05t0357800-01
Chr05	irgsp1_rep	CDS	16978073	16978180	.	-	0	Parent=Os05t0357800-01
Chr05	irgsp1_rep	three_prime_UTR	16977838	16978072	.	-	.	Parent=Os05t0357800-01
Chr05	irgsp1_rep	mRNA	16984532	16987132	.	-	.	ID=Os05t0357850-01;Name=Os05t0357850-01;Locus_id=Os05g0357850;Note=Conserved hypothetical protein.;Transcript_evidence=AK241404 (DDBJ%2C Best hit);ORF_evidence=NP_001174381.1 (RefSeq);NIAS_FLcDNA=J065159C03;TENOR=Os05t0357850-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	16986905	16987132	.	-	.	Parent=Os05t0357850-01
Chr05	irgsp1_rep	CDS	16986840	16986904	.	-	0	Parent=Os05t0357850-01
Chr05	irgsp1_rep	CDS	16986365	16986495	.	-	1	Parent=Os05t0357850-01
Chr05	irgsp1_rep	CDS	16985936	16985940	.	-	2	Parent=Os05t0357850-01
Chr05	irgsp1_rep	three_prime_UTR	16984532	16985935	.	-	.	Parent=Os05t0357850-01
Chr05	irgsp1_rep	mRNA	16992294	16995623	.	-	.	ID=Os05t0358000-01;Name=Os05t0358000-01;Locus_id=Os05g0358000;Oryzabase Gene Symbol Synonym(s)=OsDi19-2;Oryzabase Gene Name Synonym(s)=drought-induced 19-2;Note=Conserved hypothetical protein.;Transcript_evidence=AK070900 (DDBJ%2C Best hit);ORF_evidence=B9FP47 (UniProt);NIAS_FLcDNA=J023073C10;Oryzabase=18577;TENOR=Os05t0358000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	16995503	16995623	.	-	.	Parent=Os05t0358000-01
Chr05	irgsp1_rep	CDS	16995170	16995502	.	-	0	Parent=Os05t0358000-01
Chr05	irgsp1_rep	three_prime_UTR	16992294	16995169	.	-	.	Parent=Os05t0358000-01
Chr05	irgsp1_rep	mRNA	16988964	16994040	.	-	.	ID=Os05t0358000-02;Name=Os05t0358000-02;Locus_id=Os05g0358000;Oryzabase Gene Symbol Synonym(s)=OsDi19-2;Oryzabase Gene Name Synonym(s)=drought-induced 19-2;Note=Drought induced 19 family protein.;Transcript_evidence=AK101263 (DDBJ%2C Best hit);ORF_evidence=Q5W794 (UniProt);InterPro=Drought induced 19/ RING finger protein 114 (IPR008598);NIAS_FLcDNA=J033032J06;Oryzabase=18577;Expression=AK101263;TENOR=Os05t0358000-02;KEGG=Os05t0358000-02
Chr05	irgsp1_rep	five_prime_UTR	16993896	16994040	.	-	.	Parent=Os05t0358000-02
Chr05	irgsp1_rep	CDS	16993811	16993895	.	-	0	Parent=Os05t0358000-02
Chr05	irgsp1_rep	CDS	16993519	16993682	.	-	2	Parent=Os05t0358000-02
Chr05	irgsp1_rep	CDS	16990476	16990555	.	-	0	Parent=Os05t0358000-02
Chr05	irgsp1_rep	CDS	16990071	16990337	.	-	1	Parent=Os05t0358000-02
Chr05	irgsp1_rep	CDS	16989403	16989508	.	-	1	Parent=Os05t0358000-02
Chr05	irgsp1_rep	three_prime_UTR	16988964	16989402	.	-	.	Parent=Os05t0358000-02
Chr05	irgsp1_rep	mRNA	16988934	16993972	.	-	.	ID=Os05t0358000-03;Name=Os05t0358000-03;Locus_id=Os05g0358000;Oryzabase Gene Symbol Synonym(s)=OsDi19-2;Oryzabase Gene Name Synonym(s)=drought-induced 19-2;Note=Drought induced 19 family protein.;Transcript_evidence=AK061141 (DDBJ%2C Best hit);ORF_evidence=Q5W794 (UniProt);InterPro=Drought induced 19/ RING finger protein 114 (IPR008598);NIAS_FLcDNA=006-208-C03;Oryzabase=18577;Expression=AK061141;TENOR=Os05t0358000-03;KEGG=Os05t0358000-03
Chr05	irgsp1_rep	five_prime_UTR	16993896	16993972	.	-	.	Parent=Os05t0358000-03
Chr05	irgsp1_rep	CDS	16993811	16993895	.	-	0	Parent=Os05t0358000-03
Chr05	irgsp1_rep	CDS	16993519	16993682	.	-	2	Parent=Os05t0358000-03
Chr05	irgsp1_rep	CDS	16990476	16990555	.	-	0	Parent=Os05t0358000-03
Chr05	irgsp1_rep	CDS	16990071	16990337	.	-	1	Parent=Os05t0358000-03
Chr05	irgsp1_rep	CDS	16989403	16989508	.	-	1	Parent=Os05t0358000-03
Chr05	irgsp1_rep	three_prime_UTR	16988934	16989402	.	-	.	Parent=Os05t0358000-03
Chr05	irgsp1_rep	mRNA	16998636	16999256	.	+	.	ID=Os05t0358100-00;Name=Os05t0358100-00;Locus_id=Os05g0358100;Note=Hypothetical conserved gene.;Transcript_evidence=EU941603 (DDBJ);ORF_evidence=Q5W793 (UniProt);TENOR=Os05t0358100-00;KEGG=Os05t0358100-00
Chr05	irgsp1_rep	CDS	16998636	16999256	.	+	0	Parent=Os05t0358100-00
Chr05	irgsp1_rep	mRNA	16998623	16999252	.	-	.	ID=Os05t0358101-00;Name=Os05t0358101-00;Locus_id=Os05g0358101;Note=Conserved hypothetical protein.;Transcript_evidence=EU954204 (DDBJ);ORF_evidence=Q5W793 (UniProt);TENOR=Os05t0358101-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	16998623	16999252	.	-	0	Parent=Os05t0358101-00
Chr05	irgsp1_rep	mRNA	17006502	17011733	.	-	.	ID=Os05t0358200-01;Name=Os05t0358200-01;Locus_id=Os05g0358200;Note=Similar to DNA primase.;Transcript_evidence=AK073973 (DDBJ%2C Best hit);ORF_evidence=B9FP48 (UniProt);GO=Biological Process: DNA replication%2C synthesis of RNA primer (GO:0006269),Molecular Function: DNA primase activity (GO:0003896);InterPro=DNA primase%2C small subunit%2C eukaryotic/archaeal (IPR014052);NIAS_FLcDNA=J033075H06;TENOR=Os05t0358200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	17011636	17011733	.	-	.	Parent=Os05t0358200-01
Chr05	irgsp1_rep	five_prime_UTR	17010430	17010579	.	-	.	Parent=Os05t0358200-01
Chr05	irgsp1_rep	five_prime_UTR	17009939	17010315	.	-	.	Parent=Os05t0358200-01
Chr05	irgsp1_rep	CDS	17009714	17009938	.	-	0	Parent=Os05t0358200-01
Chr05	irgsp1_rep	CDS	17009455	17009604	.	-	0	Parent=Os05t0358200-01
Chr05	irgsp1_rep	three_prime_UTR	17008966	17009454	.	-	.	Parent=Os05t0358200-01
Chr05	irgsp1_rep	three_prime_UTR	17008833	17008894	.	-	.	Parent=Os05t0358200-01
Chr05	irgsp1_rep	three_prime_UTR	17008598	17008713	.	-	.	Parent=Os05t0358200-01
Chr05	irgsp1_rep	three_prime_UTR	17008357	17008478	.	-	.	Parent=Os05t0358200-01
Chr05	irgsp1_rep	three_prime_UTR	17008106	17008168	.	-	.	Parent=Os05t0358200-01
Chr05	irgsp1_rep	three_prime_UTR	17007636	17008018	.	-	.	Parent=Os05t0358200-01
Chr05	irgsp1_rep	three_prime_UTR	17007478	17007526	.	-	.	Parent=Os05t0358200-01
Chr05	irgsp1_rep	three_prime_UTR	17007302	17007381	.	-	.	Parent=Os05t0358200-01
Chr05	irgsp1_rep	three_prime_UTR	17006502	17007086	.	-	.	Parent=Os05t0358200-01
Chr05	irgsp1_rep	mRNA	17014645	17017767	.	+	.	ID=Os05t0358400-01;Name=Os05t0358400-01;Locus_id=Os05g0358400;Note=Butirosin biosynthesis%2C BtrG-like domain containing protein.;Transcript_evidence=AK071714 (DDBJ%2C Best hit),AK109333 (DDBJ%2C Best hit);ORF_evidence=B9FP49 (UniProt);InterPro=Butirosin biosynthesis%2C BtrG-like (IPR013024);NIAS_FLcDNA=J023108P17,006-202-A08;TENOR=Os05t0358400-01
Chr05	irgsp1_rep	five_prime_UTR	17014645	17014664	.	+	.	Parent=Os05t0358400-01
Chr05	irgsp1_rep	CDS	17014665	17014977	.	+	0	Parent=Os05t0358400-01
Chr05	irgsp1_rep	CDS	17015052	17015182	.	+	2	Parent=Os05t0358400-01
Chr05	irgsp1_rep	CDS	17015644	17015721	.	+	0	Parent=Os05t0358400-01
Chr05	irgsp1_rep	CDS	17015831	17015875	.	+	0	Parent=Os05t0358400-01
Chr05	irgsp1_rep	CDS	17016048	17016092	.	+	0	Parent=Os05t0358400-01
Chr05	irgsp1_rep	CDS	17016193	17016244	.	+	0	Parent=Os05t0358400-01
Chr05	irgsp1_rep	CDS	17016726	17016822	.	+	2	Parent=Os05t0358400-01
Chr05	irgsp1_rep	CDS	17017238	17017403	.	+	1	Parent=Os05t0358400-01
Chr05	irgsp1_rep	three_prime_UTR	17017404	17017767	.	+	.	Parent=Os05t0358400-01
Chr05	irgsp1_rep	mRNA	17016905	17018325	.	+	.	ID=Os05t0358400-02;Name=Os05t0358400-02;Locus_id=Os05g0358400;Note=Similar to predicted protein.;Transcript_evidence=AK110976 (DDBJ%2C Best hit);ORF_evidence=B9FP49 (UniProt);NIAS_FLcDNA=002-174-C04;Expression=AK110976;TENOR=Os05t0358400-02;KEGG=Os05t0358400-02
Chr05	irgsp1_rep	five_prime_UTR	17016905	17017142	.	+	.	Parent=Os05t0358400-02
Chr05	irgsp1_rep	CDS	17017143	17017403	.	+	0	Parent=Os05t0358400-02
Chr05	irgsp1_rep	three_prime_UTR	17017404	17018325	.	+	.	Parent=Os05t0358400-02
Chr05	irgsp1_rep	mRNA	17017991	17021890	.	-	.	ID=Os05t0358500-01;Name=Os05t0358500-01;Locus_id=Os05g0358500;Oryzabase Gene Symbol Synonym(s)=OsPP2C48%2C PP2C48%2C OsPP75;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C48%2C protein phosphatase 2C 48%2C protein phosphatase 75;Note=Protein phosphatase 2C domain containing protein.;Transcript_evidence=AK100777 (DDBJ%2C Best hit);ORF_evidence=NP_001151041.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J023120E20;Oryzabase=17922;Expression=AK100777;TENOR=Os05t0358500-01;KEGG=Os05t0358500-01
Chr05	irgsp1_rep	five_prime_UTR	17021478	17021890	.	-	.	Parent=Os05t0358500-01
Chr05	irgsp1_rep	CDS	17021253	17021477	.	-	0	Parent=Os05t0358500-01
Chr05	irgsp1_rep	CDS	17019124	17019556	.	-	0	Parent=Os05t0358500-01
Chr05	irgsp1_rep	CDS	17018555	17018778	.	-	2	Parent=Os05t0358500-01
Chr05	irgsp1_rep	CDS	17018073	17018252	.	-	0	Parent=Os05t0358500-01
Chr05	irgsp1_rep	three_prime_UTR	17017991	17018072	.	-	.	Parent=Os05t0358500-01
Chr05	irgsp1_rep	mRNA	17017745	17021519	.	-	.	ID=Os05t0358500-02;Name=Os05t0358500-02;Locus_id=Os05g0358500;Oryzabase Gene Symbol Synonym(s)=OsPP2C48%2C PP2C48%2C OsPP75;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C48%2C protein phosphatase 2C 48%2C protein phosphatase 75;Note=Protein phosphatase 2C domain containing protein.;Transcript_evidence=AK060575 (DDBJ%2C Best hit);ORF_evidence=NP_001151041.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=001-023-D10;Oryzabase=17922;Expression=AK060575;TENOR=Os05t0358500-02;KEGG=Os05t0358500-02
Chr05	irgsp1_rep	five_prime_UTR	17021478	17021519	.	-	.	Parent=Os05t0358500-02
Chr05	irgsp1_rep	CDS	17021253	17021477	.	-	0	Parent=Os05t0358500-02
Chr05	irgsp1_rep	CDS	17019124	17019556	.	-	0	Parent=Os05t0358500-02
Chr05	irgsp1_rep	CDS	17018555	17018778	.	-	2	Parent=Os05t0358500-02
Chr05	irgsp1_rep	CDS	17018073	17018252	.	-	0	Parent=Os05t0358500-02
Chr05	irgsp1_rep	three_prime_UTR	17017745	17018072	.	-	.	Parent=Os05t0358500-02
Chr05	irgsp1_rep	mRNA	17051414	17062718	.	-	.	ID=Os05t0358700-01;Name=Os05t0358700-01;Locus_id=Os05g0358700;CGSNL Gene Symbol=PLDzeta1;CGSNL Gene Name=PHOSPHOLIPASE D zeta 1;Oryzabase Gene Symbol Synonym(s)=OsPLDzeta1%2C OsPLDrho1;Oryzabase Gene Name Synonym(s)=phospholipase D rho 1;Note=Similar to predicted protein.;Transcript_evidence=AK242143 (DDBJ%2C Best hit);ORF_evidence=NP_188302.2 (RefSeq);InterPro=Phospholipase D (IPR015679);NIAS_FLcDNA=J075150K01;Oryzabase=8701;TENOR=Os05t0358700-01;KEGG=Os05t0358700-01 (EC:3.1.4.4)
Chr05	irgsp1_rep	five_prime_UTR	17062599	17062718	.	-	.	Parent=Os05t0358700-01
Chr05	irgsp1_rep	CDS	17062299	17062598	.	-	0	Parent=Os05t0358700-01
Chr05	irgsp1_rep	CDS	17060453	17060554	.	-	0	Parent=Os05t0358700-01
Chr05	irgsp1_rep	CDS	17059062	17059184	.	-	0	Parent=Os05t0358700-01
Chr05	irgsp1_rep	three_prime_UTR	17058779	17059061	.	-	.	Parent=Os05t0358700-01
Chr05	irgsp1_rep	three_prime_UTR	17058476	17058643	.	-	.	Parent=Os05t0358700-01
Chr05	irgsp1_rep	three_prime_UTR	17058215	17058388	.	-	.	Parent=Os05t0358700-01
Chr05	irgsp1_rep	three_prime_UTR	17057327	17057566	.	-	.	Parent=Os05t0358700-01
Chr05	irgsp1_rep	three_prime_UTR	17057124	17057240	.	-	.	Parent=Os05t0358700-01
Chr05	irgsp1_rep	three_prime_UTR	17056200	17056339	.	-	.	Parent=Os05t0358700-01
Chr05	irgsp1_rep	three_prime_UTR	17055967	17056116	.	-	.	Parent=Os05t0358700-01
Chr05	irgsp1_rep	three_prime_UTR	17055725	17055881	.	-	.	Parent=Os05t0358700-01
Chr05	irgsp1_rep	three_prime_UTR	17055117	17055650	.	-	.	Parent=Os05t0358700-01
Chr05	irgsp1_rep	three_prime_UTR	17054260	17054370	.	-	.	Parent=Os05t0358700-01
Chr05	irgsp1_rep	three_prime_UTR	17053865	17054011	.	-	.	Parent=Os05t0358700-01
Chr05	irgsp1_rep	three_prime_UTR	17053602	17053799	.	-	.	Parent=Os05t0358700-01
Chr05	irgsp1_rep	three_prime_UTR	17053381	17053482	.	-	.	Parent=Os05t0358700-01
Chr05	irgsp1_rep	three_prime_UTR	17053062	17053193	.	-	.	Parent=Os05t0358700-01
Chr05	irgsp1_rep	three_prime_UTR	17052538	17052603	.	-	.	Parent=Os05t0358700-01
Chr05	irgsp1_rep	three_prime_UTR	17052217	17052278	.	-	.	Parent=Os05t0358700-01
Chr05	irgsp1_rep	three_prime_UTR	17051414	17052142	.	-	.	Parent=Os05t0358700-01
Chr05	irgsp1_rep	mRNA	17074219	17075001	.	-	.	ID=Os05t0358900-00;Name=Os05t0358900-00;Locus_id=Os05g0358900;Note=Conserved hypothetical protein.;Transcript_evidence=FP098380 (DDBJ);ORF_evidence=B8AXG2 (UniProt);TENOR=Os05t0358900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	17074911	17075001	.	-	.	Parent=Os05t0358900-00
Chr05	irgsp1_rep	CDS	17074809	17074910	.	-	0	Parent=Os05t0358900-00
Chr05	irgsp1_rep	CDS	17074220	17074729	.	-	0	Parent=Os05t0358900-00
Chr05	irgsp1_rep	three_prime_UTR	17074219	17074219	.	-	.	Parent=Os05t0358900-00
Chr05	irgsp1_rep	mRNA	17080393	17083786	.	-	.	ID=Os05t0359000-00;Name=Os05t0359000-00;Locus_id=Os05g0359000;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001174384.1 (RefSeq);InterPro=Transposase%2C Ptta/En/Spm%2C plant (IPR004252);TENOR=Os05t0359000-00;KEGG=Os05t0359000-00
Chr05	irgsp1_rep	CDS	17083301	17083786	.	-	0	Parent=Os05t0359000-00
Chr05	irgsp1_rep	CDS	17080393	17081925	.	-	0	Parent=Os05t0359000-00
Chr05	irgsp1_rep	mRNA	17128355	17129026	.	+	.	ID=Os05t0359500-00;Name=Os05t0359500-00;Locus_id=Os05g0359500;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001055305.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os05t0359500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	17128355	17129026	.	+	0	Parent=Os05t0359500-00
Chr05	irgsp1_rep	mRNA	17128373	17128972	.	-	.	ID=Os05t0359600-00;Name=Os05t0359600-00;Locus_id=Os05g0359600;Note=Hypothetical protein.;Transcript_evidence=EU943053 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0359600-00
Chr05	irgsp1_rep	CDS	17128373	17128972	.	-	0	Parent=Os05t0359600-00
Chr05	irgsp1_rep	mRNA	17135217	17135756	.	+	.	ID=Os05t0359700-01;Name=Os05t0359700-01;Locus_id=Os05g0359700;Note=Conserved hypothetical protein.;Transcript_evidence=AK063590 (DDBJ%2C Best hit);ORF_evidence=Q6ETQ3 (UniProt);NIAS_FLcDNA=001-118-A11;TENOR=Os05t0359700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	17135217	17135218	.	+	.	Parent=Os05t0359700-01
Chr05	irgsp1_rep	CDS	17135219	17135629	.	+	0	Parent=Os05t0359700-01
Chr05	irgsp1_rep	three_prime_UTR	17135630	17135756	.	+	.	Parent=Os05t0359700-01
Chr05	irgsp1_rep	mRNA	17149339	17150185	.	+	.	ID=Os05t0359833-00;Name=Os05t0359833-00;Locus_id=Os05g0359833;Note=Similar to zinc finger%2C C3HC4 type family protein.;Transcript_evidence=EU971935 (DDBJ);ORF_evidence=NP_001152331.1 (RefSeq);TENOR=Os05t0359833-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	17149339	17149661	.	+	0	Parent=Os05t0359833-00
Chr05	irgsp1_rep	CDS	17149732	17150185	.	+	1	Parent=Os05t0359833-00
Chr05	irgsp1_rep	mRNA	17149355	17149945	.	-	.	ID=Os05t0359966-00;Name=Os05t0359966-00;Locus_id=Os05g0359966;Note=Hypothetical protein.;Transcript_evidence=EU943053 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0359966-00
Chr05	irgsp1_rep	five_prime_UTR	17149945	17149945	.	-	.	Parent=Os05t0359966-00
Chr05	irgsp1_rep	CDS	17149355	17149944	.	-	0	Parent=Os05t0359966-00
Chr05	irgsp1_rep	mRNA	17175702	17176974	.	+	.	ID=Os05t0360400-01;Name=Os05t0360400-01;Locus_id=Os05g0360400;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK106046 (DDBJ%2C Best hit);ORF_evidence=NP_001152331.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=001-206-E07;Expression=AK106046;TENOR=Os05t0360400-01;KEGG=Os05t0360400-01
Chr05	irgsp1_rep	five_prime_UTR	17175702	17175914	.	+	.	Parent=Os05t0360400-01
Chr05	irgsp1_rep	CDS	17175915	17176517	.	+	0	Parent=Os05t0360400-01
Chr05	irgsp1_rep	three_prime_UTR	17176518	17176974	.	+	.	Parent=Os05t0360400-01
Chr05	irgsp1_rep	mRNA	17197743	17198577	.	+	.	ID=Os05t0360800-00;Name=Os05t0360800-00;Locus_id=Os05g0360800;Note=Hypothetical conserved gene.;Transcript_evidence=CT836438 (DDBJ%2C Best hit);ORF_evidence=Q6L4M8 (UniProt);TENOR=Os05t0360800-00;KEGG=Os05t0360800-00
Chr05	irgsp1_rep	CDS	17197743	17198450	.	+	0	Parent=Os05t0360800-00
Chr05	irgsp1_rep	three_prime_UTR	17198451	17198577	.	+	.	Parent=Os05t0360800-00
Chr05	irgsp1_rep	mRNA	17199779	17200375	.	+	.	ID=Os05t0360900-00;Name=Os05t0360900-00;Locus_id=Os05g0360900;Note=Pectinesterase inhibitor domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001174385.1 (RefSeq);GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);TENOR=Os05t0360900-00;KEGG=Os05t0360900-00
Chr05	irgsp1_rep	CDS	17199779	17200375	.	+	0	Parent=Os05t0360900-00
Chr05	irgsp1_rep	mRNA	17202440	17204121	.	+	.	ID=Os05t0361000-00;Name=Os05t0361000-00;Locus_id=Os05g0361000;Note=Similar to cDNA%2C clone: J075083L18%2C full insert sequence.;Transcript_evidence=ab initio prediction;ORF_evidence=B7F956 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os05t0361000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	17202440	17203396	.	+	0	Parent=Os05t0361000-00
Chr05	irgsp1_rep	CDS	17203435	17204121	.	+	0	Parent=Os05t0361000-00
Chr05	irgsp1_rep	mRNA	17209599	17216204	.	+	.	ID=Os05t0361200-01;Name=Os05t0361200-01;Locus_id=Os05g0361200;Oryzabase Gene Symbol Synonym(s)=FC2%2C OsGUN6-2%2C GUN6-2;Oryzabase Gene Name Synonym(s)=Ferrochelatase 2%2C Genome uncoupled 6-2;Note=Similar to Ferrochelatase.;Transcript_evidence=AK073873 (DDBJ%2C Best hit);ORF_evidence=B9FP56 (UniProt);GO=Biological Process: heme biosynthetic process (GO:0006783),Molecular Function: ferrochelatase activity (GO:0004325);InterPro=Ferrochelatase (IPR001015),Ferrochelatase%2C active site (IPR019772),Chlorophyll a/b binding protein domain (IPR023329);NIAS_FLcDNA=J033072J07;Oryzabase=19975;TENOR=Os05t0361200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	17209599	17209599	.	+	.	Parent=Os05t0361200-01
Chr05	irgsp1_rep	CDS	17209600	17209791	.	+	0	Parent=Os05t0361200-01
Chr05	irgsp1_rep	CDS	17209990	17210108	.	+	0	Parent=Os05t0361200-01
Chr05	irgsp1_rep	CDS	17211156	17211471	.	+	1	Parent=Os05t0361200-01
Chr05	irgsp1_rep	CDS	17211832	17211975	.	+	0	Parent=Os05t0361200-01
Chr05	irgsp1_rep	CDS	17213106	17213207	.	+	0	Parent=Os05t0361200-01
Chr05	irgsp1_rep	CDS	17213611	17213714	.	+	0	Parent=Os05t0361200-01
Chr05	irgsp1_rep	CDS	17213796	17213922	.	+	1	Parent=Os05t0361200-01
Chr05	irgsp1_rep	CDS	17214062	17214214	.	+	0	Parent=Os05t0361200-01
Chr05	irgsp1_rep	CDS	17214514	17214614	.	+	0	Parent=Os05t0361200-01
Chr05	irgsp1_rep	CDS	17214791	17214992	.	+	1	Parent=Os05t0361200-01
Chr05	irgsp1_rep	CDS	17215498	17215722	.	+	0	Parent=Os05t0361200-01
Chr05	irgsp1_rep	three_prime_UTR	17215723	17216204	.	+	.	Parent=Os05t0361200-01
Chr05	irgsp1_rep	mRNA	17214839	17215923	.	+	.	ID=Os05t0361200-02;Name=Os05t0361200-02;Locus_id=Os05g0361200;Oryzabase Gene Symbol Synonym(s)=FC2%2C OsGUN6-2%2C GUN6-2;Oryzabase Gene Name Synonym(s)=Ferrochelatase 2%2C Genome uncoupled 6-2;Note=Similar to Ferrochelatase.;Transcript_evidence=AK062212 (DDBJ%2C Best hit);ORF_evidence=B9FP56 (UniProt);GO=Biological Process: heme biosynthetic process (GO:0006783),Molecular Function: ferrochelatase activity (GO:0004325);InterPro=Ferrochelatase (IPR001015),Chlorophyll A-B binding protein (IPR022796),Chlorophyll a/b binding protein domain (IPR023329);NIAS_FLcDNA=001-047-A06;Oryzabase=19975;Expression=AK062212;TENOR=Os05t0361200-02;KEGG=Os05t0361200-02 (EC:4.99.1.1)
Chr05	irgsp1_rep	five_prime_UTR	17214839	17214839	.	+	.	Parent=Os05t0361200-02
Chr05	irgsp1_rep	CDS	17214840	17214992	.	+	0	Parent=Os05t0361200-02
Chr05	irgsp1_rep	CDS	17215498	17215722	.	+	0	Parent=Os05t0361200-02
Chr05	irgsp1_rep	three_prime_UTR	17215723	17215923	.	+	.	Parent=Os05t0361200-02
Chr05	irgsp1_rep	mRNA	17237008	17240099	.	+	.	ID=Os05t0361500-01;Name=Os05t0361500-01;Locus_id=Os05g0361500;CGSNL Gene Symbol=PME17;CGSNL Gene Name=PECTIN METHYLESTERASE 17;Oryzabase Gene Symbol Synonym(s)=OsPME17;Oryzabase Gene Name Synonym(s)=pectin methylesterase 17;Note=Similar to Pectinesterase.;Transcript_evidence=AK100947 (DDBJ%2C Best hit);ORF_evidence=B9FHA0 (UniProt);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectinesterase inhibitor (IPR006501),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),Pectinesterase%2C active site (IPR018040);NIAS_FLcDNA=J023138H21;Oryzabase=13181;TENOR=Os05t0361500-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	17237008	17237070	.	+	.	Parent=Os05t0361500-01
Chr05	irgsp1_rep	CDS	17237071	17238097	.	+	0	Parent=Os05t0361500-01
Chr05	irgsp1_rep	CDS	17239228	17239949	.	+	2	Parent=Os05t0361500-01
Chr05	irgsp1_rep	three_prime_UTR	17239950	17240099	.	+	.	Parent=Os05t0361500-01
Chr05	irgsp1_rep	mRNA	17246987	17248234	.	+	.	ID=Os05t0361700-01;Name=Os05t0361700-01;Locus_id=Os05g0361700;CGSNL Gene Symbol=ERF61;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 61;Oryzabase Gene Symbol Synonym(s)=OsERF#061%2C OsERF061%2C OsERF61%2C AP2/EREBP#093%2C AP2/EREBP93;Oryzabase Gene Name Synonym(s)=ethylene response factor 61%2C APETALA2/ethylene-responsive element binding protein 93;Note=Similar to EREBP-2 protein (Fragment).;Transcript_evidence=AK100184 (DDBJ%2C Best hit);ORF_evidence=F1DK03 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J023031H12;Oryzabase=10575;Expression=AK100184;TENOR=Os05t0361700-01;KEGG=Os05t0361700-01
Chr05	irgsp1_rep	five_prime_UTR	17246987	17247029	.	+	.	Parent=Os05t0361700-01
Chr05	irgsp1_rep	CDS	17247030	17247135	.	+	0	Parent=Os05t0361700-01
Chr05	irgsp1_rep	CDS	17247335	17247825	.	+	2	Parent=Os05t0361700-01
Chr05	irgsp1_rep	three_prime_UTR	17247826	17248234	.	+	.	Parent=Os05t0361700-01
Chr05	irgsp1_rep	mRNA	17247313	17248223	.	+	.	ID=Os05t0361700-02;Name=Os05t0361700-02;Locus_id=Os05g0361700;CGSNL Gene Symbol=ERF61;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 61;Oryzabase Gene Symbol Synonym(s)=OsERF#061%2C OsERF061%2C OsERF61%2C AP2/EREBP#093%2C AP2/EREBP93;Oryzabase Gene Name Synonym(s)=ethylene response factor 61%2C APETALA2/ethylene-responsive element binding protein 93;Note=Similar to ethylene responsive element binding protein 2.;Transcript_evidence=AK111676 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J013155B14;Oryzabase=10575;Expression=AK111676;TENOR=Os05t0361700-02;KEGG=Os05t0361700-02
Chr05	irgsp1_rep	CDS	17247313	17247825	.	+	0	Parent=Os05t0361700-02
Chr05	irgsp1_rep	three_prime_UTR	17247826	17248223	.	+	.	Parent=Os05t0361700-02
Chr05	irgsp1_rep	mRNA	17276754	17280614	.	-	.	ID=Os05t0361900-01;Name=Os05t0361900-01;Locus_id=Os05g0361900;Note=Mitochondrial carrier protein domain containing protein.;Transcript_evidence=AK060107 (DDBJ%2C Best hit),AK104602 (DDBJ%2C Best hit),AK104747 (DDBJ%2C Best hit);ORF_evidence=B6TYC7 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial inner membrane (GO:0005743),Molecular Function: binding (GO:0005488);InterPro=Mitochondrial carrier protein (IPR002067),Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=006-308-C07,006-308-G08,001-038-E09;Expression=AK060107;TENOR=Os05t0361900-01;KEGG=Os05t0361900-01
Chr05	irgsp1_rep	five_prime_UTR	17280524	17280614	.	-	.	Parent=Os05t0361900-01
Chr05	irgsp1_rep	five_prime_UTR	17280363	17280380	.	-	.	Parent=Os05t0361900-01
Chr05	irgsp1_rep	CDS	17280308	17280362	.	-	0	Parent=Os05t0361900-01
Chr05	irgsp1_rep	CDS	17280021	17280103	.	-	2	Parent=Os05t0361900-01
Chr05	irgsp1_rep	CDS	17279247	17279323	.	-	0	Parent=Os05t0361900-01
Chr05	irgsp1_rep	CDS	17278826	17278916	.	-	1	Parent=Os05t0361900-01
Chr05	irgsp1_rep	CDS	17278509	17278562	.	-	0	Parent=Os05t0361900-01
Chr05	irgsp1_rep	CDS	17278326	17278421	.	-	0	Parent=Os05t0361900-01
Chr05	irgsp1_rep	CDS	17278045	17278134	.	-	0	Parent=Os05t0361900-01
Chr05	irgsp1_rep	CDS	17277635	17277686	.	-	0	Parent=Os05t0361900-01
Chr05	irgsp1_rep	CDS	17277453	17277514	.	-	2	Parent=Os05t0361900-01
Chr05	irgsp1_rep	CDS	17277268	17277348	.	-	0	Parent=Os05t0361900-01
Chr05	irgsp1_rep	CDS	17277061	17277186	.	-	0	Parent=Os05t0361900-01
Chr05	irgsp1_rep	three_prime_UTR	17276754	17277060	.	-	.	Parent=Os05t0361900-01
Chr05	irgsp1_rep	mRNA	17276756	17280613	.	-	.	ID=Os05t0361900-02;Name=Os05t0361900-02;Locus_id=Os05g0361900;Note=Similar to Mitochondrial carrier C12B10.09.;Transcript_evidence=AK065490 (DDBJ%2C Best hit);ORF_evidence=B6TYC7 (UniProt);InterPro=Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J013023H18;TENOR=Os05t0361900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	17280524	17280613	.	-	.	Parent=Os05t0361900-02
Chr05	irgsp1_rep	five_prime_UTR	17280259	17280380	.	-	.	Parent=Os05t0361900-02
Chr05	irgsp1_rep	CDS	17280252	17280258	.	-	0	Parent=Os05t0361900-02
Chr05	irgsp1_rep	CDS	17280021	17280103	.	-	2	Parent=Os05t0361900-02
Chr05	irgsp1_rep	CDS	17279247	17279323	.	-	0	Parent=Os05t0361900-02
Chr05	irgsp1_rep	CDS	17278826	17278916	.	-	1	Parent=Os05t0361900-02
Chr05	irgsp1_rep	CDS	17278509	17278562	.	-	0	Parent=Os05t0361900-02
Chr05	irgsp1_rep	CDS	17278311	17278421	.	-	0	Parent=Os05t0361900-02
Chr05	irgsp1_rep	three_prime_UTR	17278045	17278310	.	-	.	Parent=Os05t0361900-02
Chr05	irgsp1_rep	three_prime_UTR	17277635	17277686	.	-	.	Parent=Os05t0361900-02
Chr05	irgsp1_rep	three_prime_UTR	17277453	17277514	.	-	.	Parent=Os05t0361900-02
Chr05	irgsp1_rep	three_prime_UTR	17277268	17277348	.	-	.	Parent=Os05t0361900-02
Chr05	irgsp1_rep	three_prime_UTR	17276756	17277186	.	-	.	Parent=Os05t0361900-02
Chr05	irgsp1_rep	mRNA	17276756	17280589	.	-	.	ID=Os05t0361900-04;Name=Os05t0361900-04;Locus_id=Os05g0361900;Note=Similar to Mitochondrial carrier C12B10.09.;Transcript_evidence=AK072091 (DDBJ%2C Best hit);ORF_evidence=B6TYC7 (UniProt);InterPro=Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J013116F02;Expression=AK072091;TENOR=Os05t0361900-04;KEGG=Os05t0361900-04
Chr05	irgsp1_rep	five_prime_UTR	17280524	17280589	.	-	.	Parent=Os05t0361900-04
Chr05	irgsp1_rep	five_prime_UTR	17280363	17280380	.	-	.	Parent=Os05t0361900-04
Chr05	irgsp1_rep	CDS	17280308	17280362	.	-	0	Parent=Os05t0361900-04
Chr05	irgsp1_rep	CDS	17280021	17280103	.	-	2	Parent=Os05t0361900-04
Chr05	irgsp1_rep	CDS	17279247	17279323	.	-	0	Parent=Os05t0361900-04
Chr05	irgsp1_rep	CDS	17278817	17278916	.	-	1	Parent=Os05t0361900-04
Chr05	irgsp1_rep	three_prime_UTR	17278509	17278816	.	-	.	Parent=Os05t0361900-04
Chr05	irgsp1_rep	three_prime_UTR	17277635	17278421	.	-	.	Parent=Os05t0361900-04
Chr05	irgsp1_rep	three_prime_UTR	17277453	17277514	.	-	.	Parent=Os05t0361900-04
Chr05	irgsp1_rep	three_prime_UTR	17277268	17277348	.	-	.	Parent=Os05t0361900-04
Chr05	irgsp1_rep	three_prime_UTR	17276756	17277186	.	-	.	Parent=Os05t0361900-04
Chr05	irgsp1_rep	mRNA	17280654	17283953	.	+	.	ID=Os05t0362000-01;Name=Os05t0362000-01;Locus_id=Os05g0362000;Note=Similar to CLE family OsCLE506 protein.;Transcript_evidence=AK288471 (DDBJ%2C Best hit);ORF_evidence=A8R3Q1 (UniProt);NIAS_FLcDNA=J090037K14;TENOR=Os05t0362000-01;KEGG=Os05t0362000-01
Chr05	irgsp1_rep	five_prime_UTR	17280654	17283572	.	+	.	Parent=Os05t0362000-01
Chr05	irgsp1_rep	CDS	17283573	17283806	.	+	0	Parent=Os05t0362000-01
Chr05	irgsp1_rep	three_prime_UTR	17283807	17283953	.	+	.	Parent=Os05t0362000-01
Chr05	irgsp1_rep	mRNA	17289237	17296339	.	+	.	ID=Os05t0362100-01;Name=Os05t0362100-01;Locus_id=Os05g0362100;Note=Similar to Protein MFP-b.;Transcript_evidence=AK100115 (DDBJ%2C Best hit);ORF_evidence=NP_001152306.1 (RefSeq);GO=Biological Process: fatty acid metabolic process (GO:0006631),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: 3-hydroxyacyl-CoA dehydrogenase activity (GO:0003857),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Crotonase%2C core (IPR001753),3-hydroxyacyl-CoA dehydrogenase%2C NAD binding (IPR006176),NAD(P)-binding domain (IPR016040),Enoyl-CoA hydratase/isomerase%2C conserved site (IPR018376);NIAS_FLcDNA=J023006O04;Expression=AK100115;TENOR=Os05t0362100-01;KEGG=Os05t0362100-01
Chr05	irgsp1_rep	five_prime_UTR	17289237	17289362	.	+	.	Parent=Os05t0362100-01
Chr05	irgsp1_rep	CDS	17289363	17289456	.	+	0	Parent=Os05t0362100-01
Chr05	irgsp1_rep	CDS	17289932	17290003	.	+	2	Parent=Os05t0362100-01
Chr05	irgsp1_rep	CDS	17290083	17290139	.	+	2	Parent=Os05t0362100-01
Chr05	irgsp1_rep	CDS	17290222	17290275	.	+	2	Parent=Os05t0362100-01
Chr05	irgsp1_rep	CDS	17290359	17290426	.	+	2	Parent=Os05t0362100-01
Chr05	irgsp1_rep	CDS	17290533	17290614	.	+	0	Parent=Os05t0362100-01
Chr05	irgsp1_rep	CDS	17291337	17291392	.	+	2	Parent=Os05t0362100-01
Chr05	irgsp1_rep	CDS	17291509	17291811	.	+	0	Parent=Os05t0362100-01
Chr05	irgsp1_rep	CDS	17291909	17291995	.	+	0	Parent=Os05t0362100-01
Chr05	irgsp1_rep	CDS	17292369	17292543	.	+	0	Parent=Os05t0362100-01
Chr05	irgsp1_rep	CDS	17292621	17292742	.	+	2	Parent=Os05t0362100-01
Chr05	irgsp1_rep	CDS	17293279	17293442	.	+	0	Parent=Os05t0362100-01
Chr05	irgsp1_rep	CDS	17293533	17293596	.	+	1	Parent=Os05t0362100-01
Chr05	irgsp1_rep	three_prime_UTR	17293597	17293782	.	+	.	Parent=Os05t0362100-01
Chr05	irgsp1_rep	three_prime_UTR	17294670	17294791	.	+	.	Parent=Os05t0362100-01
Chr05	irgsp1_rep	three_prime_UTR	17294907	17295028	.	+	.	Parent=Os05t0362100-01
Chr05	irgsp1_rep	three_prime_UTR	17295553	17295701	.	+	.	Parent=Os05t0362100-01
Chr05	irgsp1_rep	three_prime_UTR	17295816	17295954	.	+	.	Parent=Os05t0362100-01
Chr05	irgsp1_rep	three_prime_UTR	17296082	17296339	.	+	.	Parent=Os05t0362100-01
Chr05	irgsp1_rep	mRNA	17305652	17306580	.	+	.	ID=Os05t0362300-01;Name=Os05t0362300-01;Locus_id=Os05g0362300;Note=Protein of unknown function DUF538 family protein.;Transcript_evidence=AK101894 (DDBJ%2C Best hit);ORF_evidence=Q9SRX5 (UniProt);InterPro=Protein of unknown function DUF538 (IPR007493);NIAS_FLcDNA=J033070O22;Expression=AK101894;TENOR=Os05t0362300-01;KEGG=Os05t0362300-01
Chr05	irgsp1_rep	five_prime_UTR	17305652	17305750	.	+	.	Parent=Os05t0362300-01
Chr05	irgsp1_rep	CDS	17305751	17306272	.	+	0	Parent=Os05t0362300-01
Chr05	irgsp1_rep	three_prime_UTR	17306273	17306580	.	+	.	Parent=Os05t0362300-01
Chr05	irgsp1_rep	mRNA	17315798	17316697	.	+	.	ID=Os05t0362500-01;Name=Os05t0362500-01;Locus_id=Os05g0362500;Note=Protein of unknown function DUF538 domain containing protein.;Transcript_evidence=AK073380 (DDBJ%2C Best hit);ORF_evidence=Q9SRX5 (UniProt);InterPro=Protein of unknown function DUF538 (IPR007493);NIAS_FLcDNA=J033029I23;Expression=AK073380;TENOR=Os05t0362500-01;KEGG=Os05t0362500-01
Chr05	irgsp1_rep	five_prime_UTR	17315798	17315815	.	+	.	Parent=Os05t0362500-01
Chr05	irgsp1_rep	CDS	17315816	17316364	.	+	0	Parent=Os05t0362500-01
Chr05	irgsp1_rep	three_prime_UTR	17316365	17316697	.	+	.	Parent=Os05t0362500-01
Chr05	irgsp1_rep	mRNA	17318904	17319266	.	-	.	ID=Os05t0362600-00;Name=Os05t0362600-00;Locus_id=Os05g0362600;CGSNL Gene Symbol=LEA12;CGSNL Gene Name=LATE EMBRYOGENESIS ABUNDANT PROTEIN 12;Oryzabase Gene Symbol Synonym(s)=OsLEA12;Oryzabase Gene Name Synonym(s)=late embryogenesis abundant protein 12;Note=Late embryogenesis abundant protein%2C LEA-5 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001055316.2 (RefSeq);GO=Biological Process: response to stress (GO:0006950);InterPro=Late embryogenesis abundant protein%2C LEA-5 (IPR004926);Oryzabase=10180;TENOR=Os05t0362600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	17318904	17319266	.	-	0	Parent=Os05t0362600-00
Chr05	irgsp1_rep	mRNA	17336740	17343631	.	+	.	ID=Os05t0363100-01;Name=Os05t0363100-01;Locus_id=Os05g0363100;Note=Similar to Monoglyceride lipase.;Transcript_evidence=AK073358 (DDBJ%2C Best hit),AK073379 (DDBJ%2C Best hit);ORF_evidence=B4FRE0 (UniProt);InterPro=Alpha/beta hydrolase fold-1 (IPR000073),Alpha/beta hydrolase%2C N-terminal (IPR022742);NIAS_FLcDNA=J033028H24,J033030A13;TENOR=Os05t0363100-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	17336740	17337093	.	+	.	Parent=Os05t0363100-01
Chr05	irgsp1_rep	CDS	17337094	17337132	.	+	0	Parent=Os05t0363100-01
Chr05	irgsp1_rep	CDS	17337375	17337468	.	+	0	Parent=Os05t0363100-01
Chr05	irgsp1_rep	CDS	17337671	17337703	.	+	2	Parent=Os05t0363100-01
Chr05	irgsp1_rep	CDS	17341550	17341696	.	+	2	Parent=Os05t0363100-01
Chr05	irgsp1_rep	CDS	17342188	17342318	.	+	2	Parent=Os05t0363100-01
Chr05	irgsp1_rep	CDS	17342447	17342584	.	+	0	Parent=Os05t0363100-01
Chr05	irgsp1_rep	CDS	17342754	17342852	.	+	0	Parent=Os05t0363100-01
Chr05	irgsp1_rep	CDS	17343001	17343375	.	+	0	Parent=Os05t0363100-01
Chr05	irgsp1_rep	three_prime_UTR	17343376	17343631	.	+	.	Parent=Os05t0363100-01
Chr05	irgsp1_rep	mRNA	17343645	17347620	.	-	.	ID=Os05t0363200-01;Name=Os05t0363200-01;Locus_id=Os05g0363200;Oryzabase Gene Symbol Synonym(s)=OsUXS5%2C UXS-5;Oryzabase Gene Name Synonym(s)=UDP-xylose synthase 5%2C UDP-glucuronic acid decarboxylase 5;Note=UDP-glucuronic acid decarboxylase.;Transcript_evidence=AK122156 (DDBJ%2C Best hit);ORF_evidence=Q6B6L9 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033145O13;Oryzabase=18089;Expression=AK122156;TENOR=Os05t0363200-01;KEGG=Os05t0363200-01
Chr05	irgsp1_rep	five_prime_UTR	17347467	17347620	.	-	.	Parent=Os05t0363200-01
Chr05	irgsp1_rep	CDS	17346830	17347466	.	-	0	Parent=Os05t0363200-01
Chr05	irgsp1_rep	CDS	17345605	17345751	.	-	2	Parent=Os05t0363200-01
Chr05	irgsp1_rep	CDS	17344734	17344813	.	-	2	Parent=Os05t0363200-01
Chr05	irgsp1_rep	CDS	17344552	17344635	.	-	0	Parent=Os05t0363200-01
Chr05	irgsp1_rep	CDS	17344380	17344454	.	-	0	Parent=Os05t0363200-01
Chr05	irgsp1_rep	CDS	17343878	17344198	.	-	0	Parent=Os05t0363200-01
Chr05	irgsp1_rep	three_prime_UTR	17343645	17343877	.	-	.	Parent=Os05t0363200-01
Chr05	irgsp1_rep	mRNA	17361511	17367196	.	-	.	ID=Os05t0363500-01;Name=Os05t0363500-01;Locus_id=Os05g0363500;Note=Hypothetical conserved gene.;Transcript_evidence=AK242867 (DDBJ%2C Best hit);ORF_evidence=B8AXE4 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),Armadillo-like helical (IPR011989),WD40/YVTN repeat-like-containing domain (IPR015943),Armadillo-type fold (IPR016024),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J090075L20;TENOR=Os05t0363500-01;KEGG=Os05t0363500-01
Chr05	irgsp1_rep	CDS	17367158	17367196	.	-	0	Parent=Os05t0363500-01
Chr05	irgsp1_rep	CDS	17366809	17367051	.	-	0	Parent=Os05t0363500-01
Chr05	irgsp1_rep	CDS	17366434	17366513	.	-	0	Parent=Os05t0363500-01
Chr05	irgsp1_rep	CDS	17365175	17366356	.	-	1	Parent=Os05t0363500-01
Chr05	irgsp1_rep	CDS	17364962	17365103	.	-	1	Parent=Os05t0363500-01
Chr05	irgsp1_rep	CDS	17364464	17364709	.	-	0	Parent=Os05t0363500-01
Chr05	irgsp1_rep	CDS	17364084	17364381	.	-	0	Parent=Os05t0363500-01
Chr05	irgsp1_rep	CDS	17363783	17363904	.	-	2	Parent=Os05t0363500-01
Chr05	irgsp1_rep	CDS	17363408	17363527	.	-	0	Parent=Os05t0363500-01
Chr05	irgsp1_rep	CDS	17363078	17363209	.	-	0	Parent=Os05t0363500-01
Chr05	irgsp1_rep	CDS	17362876	17362998	.	-	0	Parent=Os05t0363500-01
Chr05	irgsp1_rep	CDS	17362674	17362784	.	-	0	Parent=Os05t0363500-01
Chr05	irgsp1_rep	CDS	17362445	17362591	.	-	0	Parent=Os05t0363500-01
Chr05	irgsp1_rep	CDS	17362238	17362363	.	-	0	Parent=Os05t0363500-01
Chr05	irgsp1_rep	CDS	17361991	17362107	.	-	0	Parent=Os05t0363500-01
Chr05	irgsp1_rep	CDS	17361877	17361894	.	-	0	Parent=Os05t0363500-01
Chr05	irgsp1_rep	three_prime_UTR	17361511	17361876	.	-	.	Parent=Os05t0363500-01
Chr05	irgsp1_rep	mRNA	17364090	17364800	.	+	.	ID=Os05t0363533-00;Name=Os05t0363533-00;Locus_id=Os05g0363533;Note=Non-protein coding transcript.;Transcript_evidence=EU948047 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0363533-00
Chr05	irgsp1_rep	exon	17364090	17364271	.	+	.	Parent=Os05t0363533-00
Chr05	irgsp1_rep	exon	17364475	17364800	.	+	.	Parent=Os05t0363533-00
Chr05	irgsp1_rep	mRNA	17368029	17369091	.	-	.	ID=Os05t0363566-00;Name=Os05t0363566-00;Locus_id=Os05g0363566;Note=Hypothetical conserved gene.;Transcript_evidence=CT836447 (DDBJ%2C Best hit);ORF_evidence=Q688I1 (UniProt);TENOR=Os05t0363566-00;KEGG=Os05t0363566-00
Chr05	irgsp1_rep	five_prime_UTR	17368948	17369091	.	-	.	Parent=Os05t0363566-00
Chr05	irgsp1_rep	CDS	17368491	17368947	.	-	0	Parent=Os05t0363566-00
Chr05	irgsp1_rep	CDS	17368306	17368484	.	-	2	Parent=Os05t0363566-00
Chr05	irgsp1_rep	three_prime_UTR	17368029	17368305	.	-	.	Parent=Os05t0363566-00
Chr05	irgsp1_rep	mRNA	17378854	17382569	.	-	.	ID=Os05t0363600-01;Name=Os05t0363600-01;Locus_id=Os05g0363600;Note=Similar to Catalytic/ oxidoreductase%2C acting on NADH or NADPH.;Transcript_evidence=AK108572 (DDBJ%2C Best hit);ORF_evidence=B6U636 (UniProt);NIAS_FLcDNA=002-145-E11;Expression=AK108572;TENOR=Os05t0363600-01;KEGG=Os05t0363600-01
Chr05	irgsp1_rep	five_prime_UTR	17382478	17382569	.	-	.	Parent=Os05t0363600-01
Chr05	irgsp1_rep	five_prime_UTR	17382320	17382358	.	-	.	Parent=Os05t0363600-01
Chr05	irgsp1_rep	CDS	17382067	17382319	.	-	0	Parent=Os05t0363600-01
Chr05	irgsp1_rep	CDS	17379104	17379180	.	-	2	Parent=Os05t0363600-01
Chr05	irgsp1_rep	three_prime_UTR	17378854	17379103	.	-	.	Parent=Os05t0363600-01
Chr05	irgsp1_rep	mRNA	17380138	17383398	.	+	.	ID=Os05t0363951-01;Name=Os05t0363951-01;Locus_id=Os05g0363951;Note=Hypothetical gene.;Transcript_evidence=AK288282 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090018C04;TENOR=Os05t0363951-01;KEGG=Os05t0363951-01
Chr05	irgsp1_rep	five_prime_UTR	17380138	17382046	.	+	.	Parent=Os05t0363951-01
Chr05	irgsp1_rep	CDS	17382047	17382619	.	+	0	Parent=Os05t0363951-01
Chr05	irgsp1_rep	three_prime_UTR	17382620	17383398	.	+	.	Parent=Os05t0363951-01
Chr05	irgsp1_rep	mRNA	17432967	17433661	.	-	.	ID=Os05t0364300-01;Name=Os05t0364300-01;Locus_id=Os05g0364300;Note=Non-protein coding transcript.;Transcript_evidence=AK062440 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-103-A11;TENOR=Os05t0364300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	exon	17433291	17433661	.	-	.	Parent=Os05t0364300-01
Chr05	irgsp1_rep	exon	17432967	17433197	.	-	.	Parent=Os05t0364300-01
Chr05	irgsp1_rep	mRNA	17441754	17445920	.	-	.	ID=Os05t0364500-01;Name=Os05t0364500-01;Locus_id=Os05g0364500;Oryzabase Gene Symbol Synonym(s)=OsDjC48%2C DjC48;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C48;Note=Heat shock protein DnaJ%2C N-terminal domain containing protein.;Transcript_evidence=AK103527 (DDBJ%2C Best hit);ORF_evidence=B9FP63 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Domain of unknown function DUF1977%2C DnaJ-like (IPR015399);NIAS_FLcDNA=J033131M19;Oryzabase=12205;TENOR=Os05t0364500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	17445798	17445920	.	-	.	Parent=Os05t0364500-01
Chr05	irgsp1_rep	five_prime_UTR	17444166	17444169	.	-	.	Parent=Os05t0364500-01
Chr05	irgsp1_rep	CDS	17442978	17444165	.	-	0	Parent=Os05t0364500-01
Chr05	irgsp1_rep	three_prime_UTR	17442926	17442977	.	-	.	Parent=Os05t0364500-01
Chr05	irgsp1_rep	three_prime_UTR	17441754	17442088	.	-	.	Parent=Os05t0364500-01
Chr05	irgsp1_rep	mRNA	17442972	17444137	.	+	.	ID=Os05t0364550-00;Name=Os05t0364550-00;Locus_id=Os05g0364550;Note=Non-protein coding transcript.;Transcript_evidence=tplb0044b09 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os05t0364550-00
Chr05	irgsp1_rep	exon	17442972	17444137	.	+	.	Parent=Os05t0364550-00
Chr05	irgsp1_rep	mRNA	17446137	17453102	.	+	.	ID=Os05t0364600-01;Name=Os05t0364600-01;Locus_id=Os05g0364600;CGSNL Gene Symbol=SRP33A;CGSNL Gene Name=SERINE/ARGININE-RICH PROTEIN 33A;Oryzabase Gene Symbol Synonym(s)=Os-SR33a%2C OsSR33a%2C SR33a%2C OsSRp33a%2C Os-SRp33a;Oryzabase Gene Name Synonym(s)=Serine/Arginine-Rich Protein Splicing Factor 33a%2C Serine/Arginine-Rich Protein 33a%2C SR Protein 33a%2C SR subfamily protein 33a;Note=Similar to pre-mRNA-splicing factor SF2.;Transcript_evidence=AK071503 (DDBJ%2C Best hit);ORF_evidence=NP_001150424.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023091N08;Oryzabase=22732;TENOR=Os05t0364600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	17446137	17446138	.	+	.	Parent=Os05t0364600-01
Chr05	irgsp1_rep	CDS	17446139	17446208	.	+	0	Parent=Os05t0364600-01
Chr05	irgsp1_rep	CDS	17446605	17446696	.	+	2	Parent=Os05t0364600-01
Chr05	irgsp1_rep	CDS	17448138	17448203	.	+	0	Parent=Os05t0364600-01
Chr05	irgsp1_rep	CDS	17449666	17449740	.	+	0	Parent=Os05t0364600-01
Chr05	irgsp1_rep	CDS	17449889	17449988	.	+	0	Parent=Os05t0364600-01
Chr05	irgsp1_rep	CDS	17450070	17450116	.	+	2	Parent=Os05t0364600-01
Chr05	irgsp1_rep	CDS	17450188	17450245	.	+	0	Parent=Os05t0364600-01
Chr05	irgsp1_rep	CDS	17450412	17450461	.	+	2	Parent=Os05t0364600-01
Chr05	irgsp1_rep	CDS	17450668	17450724	.	+	0	Parent=Os05t0364600-01
Chr05	irgsp1_rep	CDS	17450812	17450954	.	+	0	Parent=Os05t0364600-01
Chr05	irgsp1_rep	CDS	17451044	17451085	.	+	1	Parent=Os05t0364600-01
Chr05	irgsp1_rep	CDS	17451334	17451375	.	+	1	Parent=Os05t0364600-01
Chr05	irgsp1_rep	CDS	17452490	17452523	.	+	1	Parent=Os05t0364600-01
Chr05	irgsp1_rep	CDS	17452593	17452661	.	+	0	Parent=Os05t0364600-01
Chr05	irgsp1_rep	CDS	17452753	17452767	.	+	0	Parent=Os05t0364600-01
Chr05	irgsp1_rep	three_prime_UTR	17452768	17453102	.	+	.	Parent=Os05t0364600-01
Chr05	irgsp1_rep	mRNA	17454624	17457262	.	+	.	ID=Os05t0364650-00;Name=Os05t0364650-00;Locus_id=Os05g0364650;Note=Similar to AKIN gamma.;Transcript_evidence=FP093010 (DDBJ);ORF_evidence=B4FX20 (UniProt);TENOR=Os05t0364650-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	17454624	17454897	.	+	0	Parent=Os05t0364650-00
Chr05	irgsp1_rep	CDS	17455408	17455583	.	+	2	Parent=Os05t0364650-00
Chr05	irgsp1_rep	CDS	17455927	17456073	.	+	0	Parent=Os05t0364650-00
Chr05	irgsp1_rep	CDS	17456312	17456377	.	+	0	Parent=Os05t0364650-00
Chr05	irgsp1_rep	three_prime_UTR	17456378	17456435	.	+	.	Parent=Os05t0364650-00
Chr05	irgsp1_rep	three_prime_UTR	17456588	17457262	.	+	.	Parent=Os05t0364650-00
Chr05	irgsp1_rep	mRNA	17465615	17468307	.	-	.	ID=Os05t0364700-00;Name=Os05t0364700-00;Locus_id=Os05g0364700;Note=Similar to H0219H12.7 protein.;Transcript_evidence=BT036860 (DDBJ);ORF_evidence=Q688H5 (UniProt);InterPro=Amino acid transporter%2C transmembrane (IPR013057);TENOR=Os05t0364700-00;KEGG=Os05t0364700-00
Chr05	irgsp1_rep	five_prime_UTR	17468174	17468307	.	-	.	Parent=Os05t0364700-00
Chr05	irgsp1_rep	CDS	17467709	17468173	.	-	0	Parent=Os05t0364700-00
Chr05	irgsp1_rep	three_prime_UTR	17467599	17467708	.	-	.	Parent=Os05t0364700-00
Chr05	irgsp1_rep	three_prime_UTR	17465615	17466156	.	-	.	Parent=Os05t0364700-00
Chr05	irgsp1_rep	mRNA	17497491	17498604	.	+	.	ID=Os05t0365000-00;Name=Os05t0365000-00;Locus_id=Os05g0365000;Note=Conserved hypothetical protein.;Transcript_evidence=EU964510 (DDBJ);ORF_evidence=NP_001174387.1 (RefSeq);TENOR=Os05t0365000-00;KEGG=Os05t0365000-00
Chr05	irgsp1_rep	five_prime_UTR	17497491	17497542	.	+	.	Parent=Os05t0365000-00
Chr05	irgsp1_rep	CDS	17497543	17498604	.	+	0	Parent=Os05t0365000-00
Chr05	irgsp1_rep	mRNA	17506743	17510595	.	+	.	ID=Os05t0365200-01;Name=Os05t0365200-01;Locus_id=Os05g0365200;Note=Conserved hypothetical protein.;Transcript_evidence=AK120909 (DDBJ%2C Best hit);ORF_evidence=B9FP66 (UniProt);NIAS_FLcDNA=J023033B18;Expression=AK120909;TENOR=Os05t0365200-01;KEGG=Os05t0365200-01
Chr05	irgsp1_rep	five_prime_UTR	17506743	17507013	.	+	.	Parent=Os05t0365200-01
Chr05	irgsp1_rep	five_prime_UTR	17507216	17507289	.	+	.	Parent=Os05t0365200-01
Chr05	irgsp1_rep	CDS	17507290	17507687	.	+	0	Parent=Os05t0365200-01
Chr05	irgsp1_rep	CDS	17507877	17508187	.	+	1	Parent=Os05t0365200-01
Chr05	irgsp1_rep	CDS	17508309	17508371	.	+	2	Parent=Os05t0365200-01
Chr05	irgsp1_rep	CDS	17508948	17509432	.	+	2	Parent=Os05t0365200-01
Chr05	irgsp1_rep	CDS	17510023	17510373	.	+	0	Parent=Os05t0365200-01
Chr05	irgsp1_rep	three_prime_UTR	17510374	17510595	.	+	.	Parent=Os05t0365200-01
Chr05	irgsp1_rep	mRNA	17507847	17510527	.	-	.	ID=Os05t0365250-00;Name=Os05t0365250-00;Locus_id=Os05g0365250;Note=Hypothetical protein.;Transcript_evidence=tplb0041e13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0365250-00
Chr05	irgsp1_rep	CDS	17510270	17510527	.	-	0	Parent=Os05t0365250-00
Chr05	irgsp1_rep	three_prime_UTR	17510023	17510269	.	-	.	Parent=Os05t0365250-00
Chr05	irgsp1_rep	three_prime_UTR	17508970	17509432	.	-	.	Parent=Os05t0365250-00
Chr05	irgsp1_rep	three_prime_UTR	17508293	17508390	.	-	.	Parent=Os05t0365250-00
Chr05	irgsp1_rep	three_prime_UTR	17507847	17508178	.	-	.	Parent=Os05t0365250-00
Chr05	irgsp1_rep	mRNA	17512767	17517933	.	-	.	ID=Os05t0365300-01;Name=Os05t0365300-01;Locus_id=Os05g0365300;RAP-DB Gene Symbol Synonym(s)=OsBBR1%2C OsRP1L1%2C rNBS33;RAP-DB Gene Name Synonym(s)=NBS-LRR protein rNBS33%2C Rp1-like 1%2C bacterial blight resistance-related gene 1;Oryzabase Gene Symbol Synonym(s)=OsRP1L1%2C RP1L1%2C OsBBR1%2C BBR1%2C rNBS33;Oryzabase Gene Name Synonym(s)=Rp1-like 1%2C bacterial blight resistance-related gene 1%2C NBS-LRR protein rNBS33;Note=Nucleotide-binding site leucine-rich repeat (NBS-LRR) protein%2C Bacterial blight resistance;Transcript_evidence=AK067015,AK120289,JQ845900;ORF_evidence=Q5WMM8;GO=Molecular Function: ADP binding (GO:0043531);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),NB-ARC (IPR002182),Leucine-rich repeat domain%2C L domain-like (IPR032675);NIAS_FLcDNA=J013091I15, J013050D17;Manual Curation=November 8%2C 2016;Literature_PMID=DOI:10.1007/s11105-012-0537-0;Oryzabase=15537;Expression=AK067015;TENOR=Os05t0365300-01;KEGG=Os05t0365300-01
Chr05	irgsp1_rep	five_prime_UTR	17517806	17517933	.	-	.	Parent=Os05t0365300-01
Chr05	irgsp1_rep	five_prime_UTR	17517294	17517665	.	-	.	Parent=Os05t0365300-01
Chr05	irgsp1_rep	CDS	17514663	17517293	.	-	0	Parent=Os05t0365300-01
Chr05	irgsp1_rep	three_prime_UTR	17513347	17514662	.	-	.	Parent=Os05t0365300-01
Chr05	irgsp1_rep	three_prime_UTR	17512767	17513225	.	-	.	Parent=Os05t0365300-01
Chr05	irgsp1_rep	mRNA	17512774	17516016	.	-	.	ID=Os05t0365300-02;Name=Os05t0365300-02;Locus_id=Os05g0365300;Oryzabase Gene Symbol Synonym(s)=OsRP1L1%2C RP1L1%2C OsBBR1%2C BBR1%2C rNBS33;Oryzabase Gene Name Synonym(s)=Rp1-like 1%2C bacterial blight resistance-related gene 1%2C NBS-LRR protein rNBS33;Note=Similar to NBS-LRR-like protein (Fragment).;Transcript_evidence=AK062028 (DDBJ%2C Best hit);ORF_evidence=Q945H6 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);NIAS_FLcDNA=001-043-G07;Oryzabase=15537;Expression=AK062028;TENOR=Os05t0365300-02;KEGG=Os05t0365300-02
Chr05	irgsp1_rep	five_prime_UTR	17516016	17516016	.	-	.	Parent=Os05t0365300-02
Chr05	irgsp1_rep	CDS	17515551	17516015	.	-	0	Parent=Os05t0365300-02
Chr05	irgsp1_rep	CDS	17513385	17513576	.	-	0	Parent=Os05t0365300-02
Chr05	irgsp1_rep	three_prime_UTR	17513347	17513384	.	-	.	Parent=Os05t0365300-02
Chr05	irgsp1_rep	three_prime_UTR	17512774	17513225	.	-	.	Parent=Os05t0365300-02
Chr05	irgsp1_rep	mRNA	17520840	17521909	.	-	.	ID=Os05t0365450-00;Name=Os05t0365450-00;Locus_id=Os05g0365450;Note=Similar to GNS1/SUR4 membrane protein.;Transcript_evidence=AK335257 (DDBJ);ORF_evidence=B6SZM0 (UniProt);TENOR=Os05t0365450-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	17521530	17521909	.	-	.	Parent=Os05t0365450-00
Chr05	irgsp1_rep	CDS	17520840	17521529	.	-	0	Parent=Os05t0365450-00
Chr05	irgsp1_rep	mRNA	17522715	17526483	.	+	.	ID=Os05t0365500-01;Name=Os05t0365500-01;Locus_id=Os05g0365500;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK072352 (DDBJ%2C Best hit);ORF_evidence=B9FHH1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J023054P03;Expression=AK072352;TENOR=Os05t0365500-01;KEGG=Os05t0365500-01
Chr05	irgsp1_rep	five_prime_UTR	17522715	17522791	.	+	.	Parent=Os05t0365500-01
Chr05	irgsp1_rep	CDS	17522792	17525527	.	+	0	Parent=Os05t0365500-01
Chr05	irgsp1_rep	three_prime_UTR	17525528	17525567	.	+	.	Parent=Os05t0365500-01
Chr05	irgsp1_rep	three_prime_UTR	17526120	17526483	.	+	.	Parent=Os05t0365500-01
Chr05	irgsp1_rep	mRNA	17530348	17534432	.	+	.	ID=Os05t0365600-01;Name=Os05t0365600-01;Locus_id=Os05g0365600;CGSNL Gene Symbol=BGLU19;CGSNL Gene Name=BETA-GLUCOSIDASE 19;Oryzabase Gene Symbol Synonym(s)=Os5bglu19%2C Os5Bglu19;Oryzabase Gene Name Synonym(s)=beta-glucosidase 19;Note=Similar to Hydroxyisourate hydrolase.;Transcript_evidence=AK105546 (DDBJ%2C Best hit);ORF_evidence=Q0DIT2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 1%2C active site (IPR018120);NIAS_FLcDNA=001-128-A04;Oryzabase=12092;Expression=AK105546;TENOR=Os05t0365600-01;KEGG=Os05t0365600-01
Chr05	irgsp1_rep	five_prime_UTR	17530348	17530380	.	+	.	Parent=Os05t0365600-01
Chr05	irgsp1_rep	CDS	17530381	17530569	.	+	0	Parent=Os05t0365600-01
Chr05	irgsp1_rep	CDS	17530839	17530902	.	+	0	Parent=Os05t0365600-01
Chr05	irgsp1_rep	CDS	17531340	17531398	.	+	2	Parent=Os05t0365600-01
Chr05	irgsp1_rep	CDS	17531519	17531594	.	+	0	Parent=Os05t0365600-01
Chr05	irgsp1_rep	CDS	17531772	17531843	.	+	2	Parent=Os05t0365600-01
Chr05	irgsp1_rep	CDS	17532037	17532124	.	+	2	Parent=Os05t0365600-01
Chr05	irgsp1_rep	CDS	17532243	17532501	.	+	1	Parent=Os05t0365600-01
Chr05	irgsp1_rep	CDS	17532697	17532812	.	+	0	Parent=Os05t0365600-01
Chr05	irgsp1_rep	CDS	17533127	17533347	.	+	1	Parent=Os05t0365600-01
Chr05	irgsp1_rep	CDS	17533447	17533475	.	+	2	Parent=Os05t0365600-01
Chr05	irgsp1_rep	CDS	17533572	17533671	.	+	0	Parent=Os05t0365600-01
Chr05	irgsp1_rep	CDS	17533818	17533902	.	+	2	Parent=Os05t0365600-01
Chr05	irgsp1_rep	CDS	17533986	17534214	.	+	1	Parent=Os05t0365600-01
Chr05	irgsp1_rep	three_prime_UTR	17534215	17534432	.	+	.	Parent=Os05t0365600-01
Chr05	irgsp1_rep	mRNA	17547345	17552419	.	+	.	ID=Os05t0365700-01;Name=Os05t0365700-01;Locus_id=Os05g0365700;CGSNL Gene Symbol=BGLU20;CGSNL Gene Name=BETA-GLUCOSIDASE 20;Oryzabase Gene Symbol Synonym(s)=Os5bglu20%2C Os5Bglu20;Oryzabase Gene Name Synonym(s)=beta-glucosidase 20;Note=Glycoside hydrolase%2C family 1 protein.;Transcript_evidence=AK120998 (DDBJ%2C Best hit);ORF_evidence=A2Y481 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 1%2C active site (IPR018120);NIAS_FLcDNA=J023044J03;Oryzabase=12093;Expression=AK120998;TENOR=Os05t0365700-01;KEGG=Os05t0365700-01
Chr05	irgsp1_rep	five_prime_UTR	17547345	17547870	.	+	.	Parent=Os05t0365700-01
Chr05	irgsp1_rep	CDS	17547871	17548020	.	+	0	Parent=Os05t0365700-01
Chr05	irgsp1_rep	CDS	17548226	17548333	.	+	0	Parent=Os05t0365700-01
Chr05	irgsp1_rep	three_prime_UTR	17548334	17549749	.	+	.	Parent=Os05t0365700-01
Chr05	irgsp1_rep	three_prime_UTR	17549868	17550123	.	+	.	Parent=Os05t0365700-01
Chr05	irgsp1_rep	three_prime_UTR	17550223	17550338	.	+	.	Parent=Os05t0365700-01
Chr05	irgsp1_rep	three_prime_UTR	17551008	17551542	.	+	.	Parent=Os05t0365700-01
Chr05	irgsp1_rep	three_prime_UTR	17551656	17551743	.	+	.	Parent=Os05t0365700-01
Chr05	irgsp1_rep	three_prime_UTR	17551891	17552419	.	+	.	Parent=Os05t0365700-01
Chr05	irgsp1_rep	mRNA	17566077	17571618	.	+	.	ID=Os05t0366000-00;Name=Os05t0366000-00;Locus_id=Os05g0366000;CGSNL Gene Symbol=BGLU21;CGSNL Gene Name=BETA-GLUCOSIDASE 21;Oryzabase Gene Symbol Synonym(s)=Os5bglu21%2C Os5Bglu21;Oryzabase Gene Name Synonym(s)=beta-glucosidase 21;Note=Beta-glucosidase 21.;Transcript_evidence=Q60DY1 (UniProt);ORF_evidence=Q60DY1 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 1%2C active site (IPR018120);Oryzabase=12094;TENOR=Os05t0366000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	17566077	17566217	.	+	0	Parent=Os05t0366000-00
Chr05	irgsp1_rep	CDS	17566356	17566419	.	+	0	Parent=Os05t0366000-00
Chr05	irgsp1_rep	CDS	17566813	17566871	.	+	2	Parent=Os05t0366000-00
Chr05	irgsp1_rep	CDS	17567129	17567204	.	+	0	Parent=Os05t0366000-00
Chr05	irgsp1_rep	CDS	17567309	17567380	.	+	2	Parent=Os05t0366000-00
Chr05	irgsp1_rep	CDS	17569280	17569367	.	+	2	Parent=Os05t0366000-00
Chr05	irgsp1_rep	CDS	17569447	17569702	.	+	1	Parent=Os05t0366000-00
Chr05	irgsp1_rep	CDS	17569816	17569931	.	+	0	Parent=Os05t0366000-00
Chr05	irgsp1_rep	CDS	17570483	17570703	.	+	1	Parent=Os05t0366000-00
Chr05	irgsp1_rep	CDS	17570799	17570827	.	+	2	Parent=Os05t0366000-00
Chr05	irgsp1_rep	CDS	17570923	17571022	.	+	0	Parent=Os05t0366000-00
Chr05	irgsp1_rep	CDS	17571143	17571230	.	+	2	Parent=Os05t0366000-00
Chr05	irgsp1_rep	CDS	17571384	17571618	.	+	1	Parent=Os05t0366000-00
Chr05	irgsp1_rep	mRNA	17578438	17579155	.	+	.	ID=Os05t0366200-00;Name=Os05t0366200-00;Locus_id=Os05g0366200;Note=Similar to Beta-glucosidase 20.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FHH2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);TENOR=Os05t0366200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	17578438	17578501	.	+	0	Parent=Os05t0366200-00
Chr05	irgsp1_rep	CDS	17578678	17578765	.	+	2	Parent=Os05t0366200-00
Chr05	irgsp1_rep	CDS	17578921	17579155	.	+	1	Parent=Os05t0366200-00
Chr05	irgsp1_rep	mRNA	17581260	17588053	.	+	.	ID=Os05t0366300-01;Name=Os05t0366300-01;Locus_id=Os05g0366300;Note=Conserved hypothetical protein.;Transcript_evidence=AK101228 (DDBJ%2C Best hit);ORF_evidence=B8AXF1 (UniProt);NIAS_FLcDNA=J033031H05;Expression=AK101228;TENOR=Os05t0366300-01;KEGG=Os05t0366300-01
Chr05	irgsp1_rep	five_prime_UTR	17581260	17581375	.	+	.	Parent=Os05t0366300-01
Chr05	irgsp1_rep	five_prime_UTR	17584171	17584178	.	+	.	Parent=Os05t0366300-01
Chr05	irgsp1_rep	CDS	17584179	17584477	.	+	0	Parent=Os05t0366300-01
Chr05	irgsp1_rep	CDS	17585231	17585538	.	+	1	Parent=Os05t0366300-01
Chr05	irgsp1_rep	CDS	17585618	17585665	.	+	2	Parent=Os05t0366300-01
Chr05	irgsp1_rep	CDS	17586773	17587170	.	+	2	Parent=Os05t0366300-01
Chr05	irgsp1_rep	CDS	17587549	17587884	.	+	0	Parent=Os05t0366300-01
Chr05	irgsp1_rep	three_prime_UTR	17587885	17588053	.	+	.	Parent=Os05t0366300-01
Chr05	irgsp1_rep	mRNA	17586849	17588053	.	+	.	ID=Os05t0366300-02;Name=Os05t0366300-02;Locus_id=Os05g0366300;Note=Hypothetical conserved gene.;Transcript_evidence=AK059530 (DDBJ%2C Best hit);ORF_evidence=B8AXF1 (UniProt);NIAS_FLcDNA=001-029-D07;Expression=AK059530;TENOR=Os05t0366300-02;KEGG=Os05t0366300-02
Chr05	irgsp1_rep	five_prime_UTR	17586849	17586849	.	+	.	Parent=Os05t0366300-02
Chr05	irgsp1_rep	CDS	17586850	17587170	.	+	0	Parent=Os05t0366300-02
Chr05	irgsp1_rep	CDS	17587549	17587884	.	+	0	Parent=Os05t0366300-02
Chr05	irgsp1_rep	three_prime_UTR	17587885	17588053	.	+	.	Parent=Os05t0366300-02
Chr05	irgsp1_rep	mRNA	17594979	17600507	.	+	.	ID=Os05t0366600-01;Name=Os05t0366600-01;Locus_id=Os05g0366600;CGSNL Gene Symbol=BGLU22;CGSNL Gene Name=BETA-GLUCOSIDASE 22;Oryzabase Gene Symbol Synonym(s)=Os5bglu22%2C Os5Bglu22;Oryzabase Gene Name Synonym(s)=beta-glucosidase 22;Note=Similar to Hydroxyisourate hydrolase.;Transcript_evidence=AK071469 (DDBJ%2C Best hit);ORF_evidence=Q60DX8 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 1%2C active site (IPR018120);NIAS_FLcDNA=J023097J01;Oryzabase=12095;Expression=AK071469;TENOR=Os05t0366600-01;KEGG=Os05t0366600-01 (EC:3.2.1.21)
Chr05	irgsp1_rep	five_prime_UTR	17594979	17595249	.	+	.	Parent=Os05t0366600-01
Chr05	irgsp1_rep	CDS	17595250	17595432	.	+	0	Parent=Os05t0366600-01
Chr05	irgsp1_rep	CDS	17595604	17595667	.	+	0	Parent=Os05t0366600-01
Chr05	irgsp1_rep	CDS	17595893	17595951	.	+	2	Parent=Os05t0366600-01
Chr05	irgsp1_rep	CDS	17596582	17596657	.	+	0	Parent=Os05t0366600-01
Chr05	irgsp1_rep	CDS	17596777	17596848	.	+	2	Parent=Os05t0366600-01
Chr05	irgsp1_rep	CDS	17597775	17597862	.	+	2	Parent=Os05t0366600-01
Chr05	irgsp1_rep	CDS	17597962	17598217	.	+	1	Parent=Os05t0366600-01
Chr05	irgsp1_rep	CDS	17598559	17598674	.	+	0	Parent=Os05t0366600-01
Chr05	irgsp1_rep	CDS	17598820	17599040	.	+	1	Parent=Os05t0366600-01
Chr05	irgsp1_rep	CDS	17599228	17599256	.	+	2	Parent=Os05t0366600-01
Chr05	irgsp1_rep	CDS	17599418	17599519	.	+	0	Parent=Os05t0366600-01
Chr05	irgsp1_rep	CDS	17599830	17599925	.	+	0	Parent=Os05t0366600-01
Chr05	irgsp1_rep	CDS	17600027	17600266	.	+	0	Parent=Os05t0366600-01
Chr05	irgsp1_rep	three_prime_UTR	17600267	17600507	.	+	.	Parent=Os05t0366600-01
Chr05	irgsp1_rep	mRNA	17614679	17621339	.	+	.	ID=Os05t0366800-00;Name=Os05t0366800-00;Locus_id=Os05g0366800;CGSNL Gene Symbol=BGLU23;CGSNL Gene Name=BETA-GLUCOSIDASE 23;Oryzabase Gene Symbol Synonym(s)=Os5bglu23%2C Os5Bglu23;Oryzabase Gene Name Synonym(s)=beta-glucosidase 23;Note=Similar to Beta-glucosidase 22.;Transcript_evidence=tplb0006p16 (Wheat FLcDNA);ORF_evidence=Q60DX8 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);Oryzabase=12096;TENOR=Os05t0366800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	17614679	17614864	.	+	0	Parent=Os05t0366800-00
Chr05	irgsp1_rep	CDS	17615320	17615383	.	+	0	Parent=Os05t0366800-00
Chr05	irgsp1_rep	CDS	17616278	17616336	.	+	2	Parent=Os05t0366800-00
Chr05	irgsp1_rep	CDS	17616823	17616898	.	+	0	Parent=Os05t0366800-00
Chr05	irgsp1_rep	CDS	17617012	17617081	.	+	2	Parent=Os05t0366800-00
Chr05	irgsp1_rep	CDS	17618094	17618183	.	+	1	Parent=Os05t0366800-00
Chr05	irgsp1_rep	CDS	17618295	17618550	.	+	1	Parent=Os05t0366800-00
Chr05	irgsp1_rep	CDS	17619441	17619556	.	+	0	Parent=Os05t0366800-00
Chr05	irgsp1_rep	CDS	17619754	17619974	.	+	1	Parent=Os05t0366800-00
Chr05	irgsp1_rep	CDS	17620430	17620626	.	+	2	Parent=Os05t0366800-00
Chr05	irgsp1_rep	three_prime_UTR	17620627	17620789	.	+	.	Parent=Os05t0366800-00
Chr05	irgsp1_rep	three_prime_UTR	17620898	17620991	.	+	.	Parent=Os05t0366800-00
Chr05	irgsp1_rep	three_prime_UTR	17621079	17621339	.	+	.	Parent=Os05t0366800-00
Chr05	irgsp1_rep	mRNA	17621500	17623499	.	-	.	ID=Os05t0366900-01;Name=Os05t0366900-01;Locus_id=Os05g0366900;Note=Conserved hypothetical protein.;Transcript_evidence=AK107765 (DDBJ%2C Best hit);ORF_evidence=B8AXF4 (UniProt);NIAS_FLcDNA=002-133-B01;Expression=AK107765;TENOR=Os05t0366900-01;KEGG=Os05t0366900-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	17623431	17623499	.	-	.	Parent=Os05t0366900-01
Chr05	irgsp1_rep	CDS	17623099	17623430	.	-	0	Parent=Os05t0366900-01
Chr05	irgsp1_rep	CDS	17622926	17622995	.	-	1	Parent=Os05t0366900-01
Chr05	irgsp1_rep	CDS	17622539	17622648	.	-	0	Parent=Os05t0366900-01
Chr05	irgsp1_rep	CDS	17622193	17622265	.	-	1	Parent=Os05t0366900-01
Chr05	irgsp1_rep	CDS	17621975	17622025	.	-	0	Parent=Os05t0366900-01
Chr05	irgsp1_rep	three_prime_UTR	17621944	17621974	.	-	.	Parent=Os05t0366900-01
Chr05	irgsp1_rep	three_prime_UTR	17621500	17621821	.	-	.	Parent=Os05t0366900-01
Chr05	irgsp1_rep	mRNA	17626780	17629089	.	-	.	ID=Os05t0367000-01;Name=Os05t0367000-01;Locus_id=Os05g0367000;Note=Similar to PHD finger-like domain protein 5A (Splicing factor 3B associated 14 kDa protein) (SF3b14b).;Transcript_evidence=AK103509 (DDBJ%2C Best hit);ORF_evidence=XP_002532111.1 (RefSeq);InterPro=PHF5-like (IPR005345);NIAS_FLcDNA=J033131E21;Expression=AK103509;TENOR=Os05t0367000-01;KEGG=Os05t0367000-01
Chr05	irgsp1_rep	five_prime_UTR	17628872	17629089	.	-	.	Parent=Os05t0367000-01
Chr05	irgsp1_rep	five_prime_UTR	17627377	17627393	.	-	.	Parent=Os05t0367000-01
Chr05	irgsp1_rep	CDS	17627044	17627376	.	-	0	Parent=Os05t0367000-01
Chr05	irgsp1_rep	three_prime_UTR	17626780	17627043	.	-	.	Parent=Os05t0367000-01
Chr05	irgsp1_rep	mRNA	17631001	17633319	.	-	.	ID=Os05t0367100-01;Name=Os05t0367100-01;Locus_id=Os05g0367100;Note=Ribosome biogenesis protein Nop16 domain containing protein.;Transcript_evidence=AK108334 (DDBJ%2C Best hit);ORF_evidence=A2Y3V3 (UniProt);InterPro=Ribosome biogenesis protein Nop16 (IPR019002);NIAS_FLcDNA=002-142-A04;Expression=AK108334;TENOR=Os05t0367100-01;KEGG=Os05t0367100-01
Chr05	irgsp1_rep	five_prime_UTR	17633238	17633319	.	-	.	Parent=Os05t0367100-01
Chr05	irgsp1_rep	CDS	17632886	17633237	.	-	0	Parent=Os05t0367100-01
Chr05	irgsp1_rep	CDS	17631498	17631619	.	-	2	Parent=Os05t0367100-01
Chr05	irgsp1_rep	CDS	17631264	17631377	.	-	0	Parent=Os05t0367100-01
Chr05	irgsp1_rep	three_prime_UTR	17631001	17631263	.	-	.	Parent=Os05t0367100-01
Chr05	irgsp1_rep	mRNA	17637812	17641298	.	-	.	ID=Os05t0367200-01;Name=Os05t0367200-01;Locus_id=Os05g0367200;Note=Conserved hypothetical protein.;Transcript_evidence=AK069282 (DDBJ%2C Best hit);ORF_evidence=B8AXF5 (UniProt);NIAS_FLcDNA=J023011A18;Oryzabase=23055;TENOR=Os05t0367200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	17641241	17641298	.	-	.	Parent=Os05t0367200-01
Chr05	irgsp1_rep	CDS	17641024	17641240	.	-	0	Parent=Os05t0367200-01
Chr05	irgsp1_rep	CDS	17639035	17639210	.	-	2	Parent=Os05t0367200-01
Chr05	irgsp1_rep	three_prime_UTR	17638758	17639034	.	-	.	Parent=Os05t0367200-01
Chr05	irgsp1_rep	three_prime_UTR	17637812	17638683	.	-	.	Parent=Os05t0367200-01
Chr05	irgsp1_rep	mRNA	17644847	17649658	.	-	.	ID=Os05t0367400-01;Name=Os05t0367400-01;Locus_id=Os05g0367400;Note=Thiamin pyrophosphokinase%2C eukaryotic domain containing protein.;Transcript_evidence=AK108439 (DDBJ%2C Best hit);ORF_evidence=NP_001147243.1 (RefSeq);GO=Biological Process: thiamine metabolic process (GO:0006772),Biological Process: thiamine diphosphate biosynthetic process (GO:0009229),Molecular Function: thiamine diphosphokinase activity (GO:0004788),Molecular Function: ATP binding (GO:0005524);InterPro=Thiamin pyrophosphokinase (IPR006282),Thiamin pyrophosphokinase%2C catalytic domain (IPR007371),Thiamin pyrophosphokinase%2C vitamin B1-binding domain (IPR007373),Thiamin pyrophosphokinase%2C eukaryotic (IPR016966);NIAS_FLcDNA=002-143-B09;Expression=AK108439;TENOR=Os05t0367400-01;KEGG=Os05t0367400-01 (EC:2.7.6.2)
Chr05	irgsp1_rep	five_prime_UTR	17649535	17649658	.	-	.	Parent=Os05t0367400-01
Chr05	irgsp1_rep	CDS	17649381	17649534	.	-	0	Parent=Os05t0367400-01
Chr05	irgsp1_rep	CDS	17649156	17649252	.	-	2	Parent=Os05t0367400-01
Chr05	irgsp1_rep	CDS	17646623	17646695	.	-	1	Parent=Os05t0367400-01
Chr05	irgsp1_rep	CDS	17645655	17645756	.	-	0	Parent=Os05t0367400-01
Chr05	irgsp1_rep	CDS	17645322	17645571	.	-	0	Parent=Os05t0367400-01
Chr05	irgsp1_rep	CDS	17645121	17645248	.	-	2	Parent=Os05t0367400-01
Chr05	irgsp1_rep	three_prime_UTR	17644847	17645120	.	-	.	Parent=Os05t0367400-01
Chr05	irgsp1_rep	mRNA	17659503	17661606	.	-	.	ID=Os05t0367800-00;Name=Os05t0367800-00;Locus_id=Os05g0367800;Oryzabase Gene Symbol Synonym(s)=OsBiP3%2C BiP3;Oryzabase Gene Name Synonym(s)=ER chaperone BiP3%2C Binding protein 3;Note=Similar to Luminal binding protein 2 precursor (BiP2) (Heat shock protein 70 homolog 2) (B70) (B-70).;Transcript_evidence=tplb0024m02 (Wheat FLcDNA);ORF_evidence=Q03684 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Heat shock protein Hsp70 (IPR001023),Heat shock protein 70 (IPR013126),Heat shock protein 70%2C conserved site (IPR018181);Oryzabase=10084;TENOR=Os05t0367800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	17659597	17661606	.	-	0	Parent=Os05t0367800-00
Chr05	irgsp1_rep	three_prime_UTR	17659503	17659596	.	-	.	Parent=Os05t0367800-00
Chr05	irgsp1_rep	mRNA	17664405	17665461	.	+	.	ID=Os05t0367900-01;Name=Os05t0367900-01;Locus_id=Os05g0367900;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK288066 (DDBJ%2C Best hit);ORF_evidence=NP_001055340.1 (RefSeq);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=J075157F19;TENOR=Os05t0367900-01;KEGG=Os05t0367900-01
Chr05	irgsp1_rep	five_prime_UTR	17664405	17664454	.	+	.	Parent=Os05t0367900-01
Chr05	irgsp1_rep	CDS	17664455	17665237	.	+	0	Parent=Os05t0367900-01
Chr05	irgsp1_rep	three_prime_UTR	17665238	17665461	.	+	.	Parent=Os05t0367900-01
Chr05	irgsp1_rep	mRNA	17670727	17671568	.	+	.	ID=Os05t0368000-00;Name=Os05t0368000-00;Locus_id=Os05g0368000;Oryzabase Gene Symbol Synonym(s)=RH1;Oryzabase Gene Name Synonym(s)=NRR Repressor Homologue 1;Note=Non-protein coding transcript.;Transcript_evidence=CT836445 (DDBJ%2C Best hit);ORF_evidence=NONE;Oryzabase=9821;TENOR=Os05t0368000-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	exon	17670727	17670842	.	+	.	Parent=Os05t0368000-00
Chr05	irgsp1_rep	exon	17671251	17671568	.	+	.	Parent=Os05t0368000-00
Chr05	irgsp1_rep	mRNA	17680494	17681105	.	+	.	ID=Os05t0368100-00;Name=Os05t0368100-00;Locus_id=Os05g0368100;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0006o08 (Wheat FLcDNA);ORF_evidence=A2Y3W1 (UniProt);TENOR=Os05t0368100-00
Chr05	irgsp1_rep	CDS	17680494	17681105	.	+	0	Parent=Os05t0368100-00
Chr05	irgsp1_rep	mRNA	17693101	17695783	.	+	.	ID=Os05t0368300-01;Name=Os05t0368300-01;Locus_id=Os05g0368300;CGSNL Gene Symbol=RPS4;CGSNL Gene Name=RIBOSOMAL PROTEIN S4;Oryzabase Gene Symbol Synonym(s)=rps4%2C RPS4a;Oryzabase Gene Name Synonym(s)=ribosomal protein S4%2C ribosomal protein S4 type I%2C ribosomal protein S4a%2C ribosomal protein small subunit 4a;Note=Similar to 40S ribosomal protein S4%2C X isoform (Single copy abundant mRNA protein) (SCR10).;Transcript_evidence=AK071862 (DDBJ%2C Best hit);ORF_evidence=P49398 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S4e (IPR000876),RNA-binding S4 (IPR002942),KOW (IPR005824),Ribosomal protein S4e%2C N-terminal (IPR013843),Ribosomal protein S4e%2C central (IPR013845),Ribosomal protein S4e%2C N-terminal%2C conserved site (IPR018199);NIAS_FLcDNA=J023123J20;Oryzabase=16012;Expression=AK071862;TENOR=Os05t0368300-01;KEGG=Os05t0368300-01
Chr05	irgsp1_rep	five_prime_UTR	17693101	17693197	.	+	.	Parent=Os05t0368300-01
Chr05	irgsp1_rep	CDS	17693198	17693200	.	+	0	Parent=Os05t0368300-01
Chr05	irgsp1_rep	CDS	17693871	17693948	.	+	0	Parent=Os05t0368300-01
Chr05	irgsp1_rep	CDS	17694205	17694385	.	+	0	Parent=Os05t0368300-01
Chr05	irgsp1_rep	CDS	17694476	17694573	.	+	2	Parent=Os05t0368300-01
Chr05	irgsp1_rep	CDS	17695080	17695511	.	+	0	Parent=Os05t0368300-01
Chr05	irgsp1_rep	three_prime_UTR	17695512	17695783	.	+	.	Parent=Os05t0368300-01
Chr05	irgsp1_rep	mRNA	17693870	17695489	.	-	.	ID=Os05t0368350-00;Name=Os05t0368350-00;Locus_id=Os05g0368350;Note=Hypothetical gene.;Transcript_evidence=BT017558 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0368350-00
Chr05	irgsp1_rep	five_prime_UTR	17695347	17695489	.	-	.	Parent=Os05t0368350-00
Chr05	irgsp1_rep	CDS	17695078	17695346	.	-	0	Parent=Os05t0368350-00
Chr05	irgsp1_rep	CDS	17694484	17694571	.	-	1	Parent=Os05t0368350-00
Chr05	irgsp1_rep	three_prime_UTR	17694205	17694483	.	-	.	Parent=Os05t0368350-00
Chr05	irgsp1_rep	three_prime_UTR	17693870	17693948	.	-	.	Parent=Os05t0368350-00
Chr05	irgsp1_rep	mRNA	17696091	17696562	.	+	.	ID=Os05t0368400-00;Name=Os05t0368400-00;Locus_id=Os05g0368400;Note=Hypothetical conserved gene.;Transcript_evidence=AK107804 (DDBJ%2C Secondary hit);ORF_evidence=Q6L587 (UniProt);Expression=AK107804;TENOR=Os05t0368400-00;KEGG=Os05t0368400-00
Chr05	irgsp1_rep	five_prime_UTR	17696091	17696091	.	+	.	Parent=Os05t0368400-00
Chr05	irgsp1_rep	CDS	17696092	17696226	.	+	0	Parent=Os05t0368400-00
Chr05	irgsp1_rep	three_prime_UTR	17696227	17696562	.	+	.	Parent=Os05t0368400-00
Chr05	irgsp1_rep	mRNA	17697119	17697191	.	-	.	ID=Os05t0368501-00;Name=Os05t0368501-00;Locus_id=Os05g0368501;Note=Non-protein coding transcript.;Transcript_evidence=X06284 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0368501-00
Chr05	irgsp1_rep	exon	17697119	17697191	.	-	.	Parent=Os05t0368501-00
Chr05	irgsp1_rep	mRNA	17714478	17715988	.	-	.	ID=Os05t0368600-01;Name=Os05t0368600-01;Locus_id=Os05g0368600;CGSNL Gene Symbol=HMP30;CGSNL Gene Name=HEAVY METAL-ASSOCIATED PROTEIN 30;Oryzabase Gene Symbol Synonym(s)=OsHMP30;Oryzabase Gene Name Synonym(s)=Heavy metal-associated protein 30;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK058953 (DDBJ%2C Best hit);ORF_evidence=NP_001147140.1 (RefSeq);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);NIAS_FLcDNA=001-020-A11;Oryzabase=23549;Expression=AK058953;TENOR=Os05t0368600-01;KEGG=Os05t0368600-01
Chr05	irgsp1_rep	five_prime_UTR	17715925	17715988	.	-	.	Parent=Os05t0368600-01
Chr05	irgsp1_rep	CDS	17715898	17715924	.	-	0	Parent=Os05t0368600-01
Chr05	irgsp1_rep	CDS	17715647	17715722	.	-	0	Parent=Os05t0368600-01
Chr05	irgsp1_rep	CDS	17714524	17715443	.	-	2	Parent=Os05t0368600-01
Chr05	irgsp1_rep	three_prime_UTR	17714478	17714523	.	-	.	Parent=Os05t0368600-01
Chr05	irgsp1_rep	mRNA	17714524	17715716	.	+	.	ID=Os05t0368633-00;Name=Os05t0368633-00;Locus_id=Os05g0368633;Note=Hypothetical gene.;Transcript_evidence=EU973702 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0368633-00;KEGG=Os05t0368633-00
Chr05	irgsp1_rep	five_prime_UTR	17714524	17714571	.	+	.	Parent=Os05t0368633-00
Chr05	irgsp1_rep	five_prime_UTR	17714711	17714842	.	+	.	Parent=Os05t0368633-00
Chr05	irgsp1_rep	CDS	17714843	17715286	.	+	0	Parent=Os05t0368633-00
Chr05	irgsp1_rep	three_prime_UTR	17715287	17715475	.	+	.	Parent=Os05t0368633-00
Chr05	irgsp1_rep	three_prime_UTR	17715591	17715716	.	+	.	Parent=Os05t0368633-00
Chr05	irgsp1_rep	mRNA	17720849	17723070	.	-	.	ID=Os05t0368666-00;Name=Os05t0368666-00;Locus_id=Os05g0368666;Note=Hypothetical gene.;Transcript_evidence=EU955468 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0368666-00;KEGG=Os05t0368666-00
Chr05	irgsp1_rep	five_prime_UTR	17722921	17723070	.	-	.	Parent=Os05t0368666-00
Chr05	irgsp1_rep	CDS	17721928	17722920	.	-	0	Parent=Os05t0368666-00
Chr05	irgsp1_rep	three_prime_UTR	17720849	17721927	.	-	.	Parent=Os05t0368666-00
Chr05	irgsp1_rep	mRNA	17722011	17723135	.	+	.	ID=Os05t0368700-01;Name=Os05t0368700-01;Locus_id=Os05g0368700;Oryzabase Gene Symbol Synonym(s)=OsSub46%2C SUB46;Oryzabase Gene Name Synonym(s)=Subtilisin 46%2C SUBTILISIN 46;Note=Similar to Subtilisin-like protease (Fragment).;Transcript_evidence=AK064686 (DDBJ%2C Best hit);ORF_evidence=Q6L584 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);NIAS_FLcDNA=002-116-D11;Oryzabase=20131;Expression=AK064686;TENOR=Os05t0368700-01;KEGG=Os05t0368700-01
Chr05	irgsp1_rep	five_prime_UTR	17722011	17722011	.	+	.	Parent=Os05t0368700-01
Chr05	irgsp1_rep	CDS	17722012	17723034	.	+	0	Parent=Os05t0368700-01
Chr05	irgsp1_rep	three_prime_UTR	17723035	17723135	.	+	.	Parent=Os05t0368700-01
Chr05	irgsp1_rep	mRNA	17751476	17753311	.	+	.	ID=Os05t0369300-01;Name=Os05t0369300-01;Locus_id=Os05g0369300;CGSNL Gene Symbol=EXO70FX2;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX2;Oryzabase Gene Symbol Synonym(s)=OsEXO70FX2%2C OsExo70FX2%2C OrysaFX2_Exo70;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein FX2;Note=Exo70 exocyst complex subunit domain containing protein.;Transcript_evidence=AK110893 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exo70 exocyst complex subunit (IPR004140),Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=002-173-A03;Oryzabase=20344;TENOR=Os05t0369300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	17751476	17751476	.	+	.	Parent=Os05t0369300-01
Chr05	irgsp1_rep	CDS	17751477	17753105	.	+	0	Parent=Os05t0369300-01
Chr05	irgsp1_rep	three_prime_UTR	17753106	17753311	.	+	.	Parent=Os05t0369300-01
Chr05	irgsp1_rep	mRNA	17756959	17758997	.	-	.	ID=Os05t0369500-01;Name=Os05t0369500-01;Locus_id=Os05g0369500;CGSNL Gene Symbol=EXO70FX3;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX3;Oryzabase Gene Symbol Synonym(s)=OsEXO70FX3%2C OsExo70FX3%2C OrysaFX3_Exo70;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein FX3;Note=Exo70 exocyst complex subunit domain containing protein.;Transcript_evidence=AK070770 (DDBJ%2C Best hit);ORF_evidence=B9FHI7 (UniProt);GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exo70 exocyst complex subunit (IPR004140),Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=J023069I18;Oryzabase=20345;TENOR=Os05t0369500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	17758997	17758997	.	-	.	Parent=Os05t0369500-01
Chr05	irgsp1_rep	CDS	17757323	17758996	.	-	0	Parent=Os05t0369500-01
Chr05	irgsp1_rep	three_prime_UTR	17756959	17757322	.	-	.	Parent=Os05t0369500-01
Chr05	irgsp1_rep	mRNA	17765712	17767475	.	+	.	ID=Os05t0369700-01;Name=Os05t0369700-01;Locus_id=Os05g0369700;CGSNL Gene Symbol=EXO70X7;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN X7;Oryzabase Gene Symbol Synonym(s)=OsEXO70X7%2C OsExo70X7%2C OrysaX7_Exo70;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein X7;Note=Exo70 exocyst complex subunit domain containing protein.;Transcript_evidence=AK102233 (DDBJ%2C Best hit);ORF_evidence=B9FP79 (UniProt);GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exo70 exocyst complex subunit (IPR004140);NIAS_FLcDNA=J033088A19;Oryzabase=20373;TENOR=Os05t0369700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	17765712	17766024	.	+	.	Parent=Os05t0369700-01
Chr05	irgsp1_rep	CDS	17766025	17766573	.	+	0	Parent=Os05t0369700-01
Chr05	irgsp1_rep	three_prime_UTR	17766574	17767475	.	+	.	Parent=Os05t0369700-01
Chr05	irgsp1_rep	mRNA	17776218	17778528	.	-	.	ID=Os05t0369800-00;Name=Os05t0369800-00;Locus_id=Os05g0369800;Note=Hypothetical conserved gene.;Transcript_evidence=AK288039 (DDBJ%2C Secondary hit);ORF_evidence=B9FP80 (UniProt);TENOR=Os05t0369800-00;KEGG=Os05t0369800-00
Chr05	irgsp1_rep	five_prime_UTR	17778480	17778528	.	-	.	Parent=Os05t0369800-00
Chr05	irgsp1_rep	CDS	17778219	17778479	.	-	0	Parent=Os05t0369800-00
Chr05	irgsp1_rep	CDS	17777365	17777457	.	-	0	Parent=Os05t0369800-00
Chr05	irgsp1_rep	three_prime_UTR	17777361	17777364	.	-	.	Parent=Os05t0369800-00
Chr05	irgsp1_rep	three_prime_UTR	17776910	17776953	.	-	.	Parent=Os05t0369800-00
Chr05	irgsp1_rep	three_prime_UTR	17776218	17776458	.	-	.	Parent=Os05t0369800-00
Chr05	irgsp1_rep	mRNA	17779880	17781705	.	+	.	ID=Os05t0369900-01;Name=Os05t0369900-01;Locus_id=Os05g0369900;CGSNL Gene Symbol=EXO70FX1;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX1;Oryzabase Gene Symbol Synonym(s)=OsEXO70FX1%2C OsExo70FX1%2C OrysaFX1_Exo70;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein FX1;Note=Exo70 exocyst complex subunit domain containing protein.;Transcript_evidence=AK064110 (DDBJ%2C Best hit);ORF_evidence=Q60EX4 (UniProt);GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exo70 exocyst complex subunit (IPR004140),Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=002-101-G07;Oryzabase=20343;Expression=AK064110;TENOR=Os05t0369900-01;KEGG=Os05t0369900-01
Chr05	irgsp1_rep	five_prime_UTR	17779880	17779915	.	+	.	Parent=Os05t0369900-01
Chr05	irgsp1_rep	CDS	17779916	17781033	.	+	0	Parent=Os05t0369900-01
Chr05	irgsp1_rep	CDS	17781233	17781236	.	+	1	Parent=Os05t0369900-01
Chr05	irgsp1_rep	three_prime_UTR	17781237	17781705	.	+	.	Parent=Os05t0369900-01
Chr05	irgsp1_rep	mRNA	17783522	17785974	.	-	.	ID=Os05t0370000-01;Name=Os05t0370000-01;Locus_id=Os05g0370000;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK069708 (DDBJ%2C Best hit);ORF_evidence=B9FHI9 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J023031M23;Expression=AK069708;TENOR=Os05t0370000-01;KEGG=Os05t0370000-01
Chr05	irgsp1_rep	five_prime_UTR	17785634	17785974	.	-	.	Parent=Os05t0370000-01
Chr05	irgsp1_rep	CDS	17783639	17785633	.	-	0	Parent=Os05t0370000-01
Chr05	irgsp1_rep	three_prime_UTR	17783522	17783638	.	-	.	Parent=Os05t0370000-01
Chr05	irgsp1_rep	mRNA	17786180	17792496	.	+	.	ID=Os05t0370100-00;Name=Os05t0370100-00;Locus_id=Os05g0370100;Note=Conserved hypothetical protein.;Transcript_evidence=AK065977 (DDBJ%2C Secondary hit);ORF_evidence=Q75IS6 (UniProt);TENOR=Os05t0370100-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	17786180	17786465	.	+	.	Parent=Os05t0370100-00
Chr05	irgsp1_rep	five_prime_UTR	17786475	17786876	.	+	.	Parent=Os05t0370100-00
Chr05	irgsp1_rep	five_prime_UTR	17788614	17788629	.	+	.	Parent=Os05t0370100-00
Chr05	irgsp1_rep	CDS	17788630	17788636	.	+	0	Parent=Os05t0370100-00
Chr05	irgsp1_rep	CDS	17789560	17789846	.	+	2	Parent=Os05t0370100-00
Chr05	irgsp1_rep	CDS	17790515	17790520	.	+	0	Parent=Os05t0370100-00
Chr05	irgsp1_rep	three_prime_UTR	17790521	17791878	.	+	.	Parent=Os05t0370100-00
Chr05	irgsp1_rep	three_prime_UTR	17791894	17792496	.	+	.	Parent=Os05t0370100-00
Chr05	irgsp1_rep	mRNA	17794002	17795129	.	-	.	ID=Os05t0370200-01;Name=Os05t0370200-01;Locus_id=Os05g0370200;Note=Conserved hypothetical protein.;Transcript_evidence=AK070493 (DDBJ%2C Best hit);ORF_evidence=B9FP82 (UniProt);NIAS_FLcDNA=J023048L17;Expression=AK070493;TENOR=Os05t0370200-01;KEGG=Os05t0370200-01
Chr05	irgsp1_rep	five_prime_UTR	17795127	17795129	.	-	.	Parent=Os05t0370200-01
Chr05	irgsp1_rep	CDS	17794902	17795126	.	-	0	Parent=Os05t0370200-01
Chr05	irgsp1_rep	three_prime_UTR	17794002	17794901	.	-	.	Parent=Os05t0370200-01
Chr05	irgsp1_rep	mRNA	17799742	17803977	.	-	.	ID=Os05t0370300-00;Name=Os05t0370300-00;Locus_id=Os05g0370300;Note=Similar to src2-like protein.;Transcript_evidence=AK366318 (DDBJ);ORF_evidence=NP_001149536.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium/lipid-binding domain%2C CaLB (IPR008973);TENOR=Os05t0370300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	17803288	17803977	.	-	0	Parent=Os05t0370300-00
Chr05	irgsp1_rep	CDS	17799742	17800356	.	-	0	Parent=Os05t0370300-00
Chr05	irgsp1_rep	mRNA	17812706	17816392	.	+	.	ID=Os05t0370600-01;Name=Os05t0370600-01;Locus_id=Os05g0370600;CGSNL Gene Symbol=FTIP7;CGSNL Gene Name=FT-INTERACTING PROTEIN 7;Oryzabase Gene Symbol Synonym(s)=OsFTIP7;Note=C2 calcium-dependent membrane targeting domain containing protein.;Transcript_evidence=AK102476 (DDBJ%2C Best hit);ORF_evidence=NP_001152102.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),Phosphoribosyltransferase C-terminal (IPR013583),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=J033094I04;Oryzabase=22486;Expression=AK102476;TENOR=Os05t0370600-01;KEGG=Os05t0370600-01
Chr05	irgsp1_rep	five_prime_UTR	17812706	17812916	.	+	.	Parent=Os05t0370600-01
Chr05	irgsp1_rep	five_prime_UTR	17813257	17813374	.	+	.	Parent=Os05t0370600-01
Chr05	irgsp1_rep	five_prime_UTR	17813470	17813563	.	+	.	Parent=Os05t0370600-01
Chr05	irgsp1_rep	CDS	17813564	17815888	.	+	0	Parent=Os05t0370600-01
Chr05	irgsp1_rep	three_prime_UTR	17815889	17816392	.	+	.	Parent=Os05t0370600-01
Chr05	irgsp1_rep	mRNA	17812076	17816297	.	+	.	ID=Os05t0370600-02;Name=Os05t0370600-02;Locus_id=Os05g0370600;RAP-DB Gene Symbol Synonym(s)=OsFTIP7;RAP-DB Gene Name Synonym(s)=FT-INTERACTING PROTEIN 7;CGSNL Gene Symbol=FTIP7;CGSNL Gene Name=FT-INTERACTING PROTEIN 7;Oryzabase Gene Symbol Synonym(s)=OsFTIP7;Note=A member of the family of multiple C2 domain and transmembrane region proteins (MCTPs)%2C Control of auxin-mediated anther dehiscence;Transcript_evidence=AK058522 (truncated),Inferred from literature;ORF_evidence=Q60EW9;InterPro=C2 domain superfamily (IPR035892),C2 domain (IPR000008),Phosphoribosyltransferase C-terminal (IPR013583);NIAS_FLcDNA=001-016-H09 (truncated);Manual Curation=June 19%2C 2018;Literature_PMID=29915329;Oryzabase=22486;Expression=AK058522;TENOR=Os05t0370600-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=cellular_component (GO:0005575) [whole cell (except nucleus)]
Chr05	irgsp1_rep	five_prime_UTR	17812076	17812288	.	+	.	Parent=Os05t0370600-02
Chr05	irgsp1_rep	five_prime_UTR	17812796	17812916	.	+	.	Parent=Os05t0370600-02
Chr05	irgsp1_rep	five_prime_UTR	17813257	17813381	.	+	.	Parent=Os05t0370600-02
Chr05	irgsp1_rep	five_prime_UTR	17813470	17813563	.	+	.	Parent=Os05t0370600-02
Chr05	irgsp1_rep	CDS	17813564	17815888	.	+	0	Parent=Os05t0370600-02
Chr05	irgsp1_rep	three_prime_UTR	17815889	17816297	.	+	.	Parent=Os05t0370600-02
Chr05	irgsp1_rep	mRNA	17813459	17815901	.	-	.	ID=Os05t0370650-00;Name=Os05t0370650-00;Locus_id=Os05g0370650;Note=Hypothetical protein.;Transcript_evidence=tplb0048i05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0370650-00
Chr05	irgsp1_rep	five_prime_UTR	17815560	17815901	.	-	.	Parent=Os05t0370650-00
Chr05	irgsp1_rep	CDS	17815287	17815559	.	-	0	Parent=Os05t0370650-00
Chr05	irgsp1_rep	three_prime_UTR	17813459	17815286	.	-	.	Parent=Os05t0370650-00
Chr05	irgsp1_rep	mRNA	17821376	17827429	.	-	.	ID=Os05t0370700-01;Name=Os05t0370700-01;Locus_id=Os05g0370700;Note=Alpha/beta hydrolase family protein.;Transcript_evidence=AK108862 (DDBJ%2C Best hit);ORF_evidence=B6U5B4 (UniProt);NIAS_FLcDNA=002-152-B10;Expression=AK108862;TENOR=Os05t0370700-01;KEGG=Os05t0370700-01
Chr05	irgsp1_rep	five_prime_UTR	17827423	17827429	.	-	.	Parent=Os05t0370700-01
Chr05	irgsp1_rep	CDS	17826958	17827422	.	-	0	Parent=Os05t0370700-01
Chr05	irgsp1_rep	CDS	17823313	17823450	.	-	0	Parent=Os05t0370700-01
Chr05	irgsp1_rep	CDS	17821551	17821844	.	-	0	Parent=Os05t0370700-01
Chr05	irgsp1_rep	three_prime_UTR	17821376	17821550	.	-	.	Parent=Os05t0370700-01
Chr05	irgsp1_rep	mRNA	17834350	17843173	.	-	.	ID=Os05t0370900-00;Name=Os05t0370900-00;Locus_id=Os05g0370900;Note=Conserved hypothetical protein.;Transcript_evidence=EU971454 (DDBJ);ORF_evidence=B8AXF8 (UniProt);TENOR=Os05t0370900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	17842565	17843173	.	-	0	Parent=Os05t0370900-00
Chr05	irgsp1_rep	CDS	17837008	17837157	.	-	0	Parent=Os05t0370900-00
Chr05	irgsp1_rep	CDS	17834350	17834631	.	-	0	Parent=Os05t0370900-00
Chr05	irgsp1_rep	mRNA	17861913	17865245	.	-	.	ID=Os05t0371100-00;Name=Os05t0371100-00;Locus_id=Os05g0371100;CGSNL Gene Symbol=CWZF5;CGSNL Gene Name=CW-DOMAIN CONTAINING ZINC FINGER PROTEIN 5;Oryzabase Gene Symbol Synonym(s)=OsCW-ZF5%2C CW-ZF5;Oryzabase Gene Name Synonym(s)=cysteine-tryptophan-domain containing zinc finger protein on Chromosome 5%2C CW-domain containing zinc finger protein 5%2C CW-domain containing protein 5;Note=Conserved hypothetical protein.;Transcript_evidence=EU945392 (DDBJ);ORF_evidence=B9FP83 (UniProt);Oryzabase=21908;TENOR=Os05t0371100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	17865193	17865245	.	-	.	Parent=Os05t0371100-00
Chr05	irgsp1_rep	CDS	17865001	17865192	.	-	0	Parent=Os05t0371100-00
Chr05	irgsp1_rep	CDS	17862702	17862774	.	-	0	Parent=Os05t0371100-00
Chr05	irgsp1_rep	CDS	17862434	17862609	.	-	2	Parent=Os05t0371100-00
Chr05	irgsp1_rep	three_prime_UTR	17862079	17862433	.	-	.	Parent=Os05t0371100-00
Chr05	irgsp1_rep	three_prime_UTR	17861913	17861990	.	-	.	Parent=Os05t0371100-00
Chr05	irgsp1_rep	mRNA	17852931	17853588	.	-	.	ID=Os05t0371133-00;Name=Os05t0371133-00;Locus_id=Os05g0371133;Note=Non-protein coding transcript.;Transcript_evidence=EU947055 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0371133-00
Chr05	irgsp1_rep	exon	17852931	17853588	.	-	.	Parent=Os05t0371133-00
Chr05	irgsp1_rep	mRNA	17854886	17855281	.	-	.	ID=Os05t0371166-01;Name=Os05t0371166-01;Locus_id=Os05g0371166;Note=Non-protein coding transcript.;Transcript_evidence=AK242377 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080040H10;TENOR=Os05t0371166-01
Chr05	irgsp1_rep	exon	17854886	17855281	.	-	.	Parent=Os05t0371166-01
Chr05	irgsp1_rep	mRNA	17870104	17873680	.	+	.	ID=Os05t0371200-01;Name=Os05t0371200-01;Locus_id=Os05g0371200;Note=Similar to 26S proteasome non-ATPase regulatory subunit 14 (26S proteasome regulatory subunit rpn11).;Transcript_evidence=AK109403 (DDBJ%2C Best hit),AK111763 (DDBJ%2C Best hit),AK112020 (DDBJ%2C Best hit);ORF_evidence=B4FLQ8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Mov34/MPN/PAD-1 (IPR000555);NIAS_FLcDNA=006-302-D04,J023062E06,006-309-B06;TENOR=Os05t0371200-01
Chr05	irgsp1_rep	five_prime_UTR	17870104	17870183	.	+	.	Parent=Os05t0371200-01
Chr05	irgsp1_rep	CDS	17870184	17870310	.	+	0	Parent=Os05t0371200-01
Chr05	irgsp1_rep	CDS	17870381	17870558	.	+	2	Parent=Os05t0371200-01
Chr05	irgsp1_rep	CDS	17871195	17871276	.	+	1	Parent=Os05t0371200-01
Chr05	irgsp1_rep	CDS	17872753	17872929	.	+	0	Parent=Os05t0371200-01
Chr05	irgsp1_rep	CDS	17873016	17873183	.	+	0	Parent=Os05t0371200-01
Chr05	irgsp1_rep	CDS	17873281	17873472	.	+	0	Parent=Os05t0371200-01
Chr05	irgsp1_rep	three_prime_UTR	17873473	17873680	.	+	.	Parent=Os05t0371200-01
Chr05	irgsp1_rep	mRNA	17880820	17882234	.	-	.	ID=Os05t0371500-01;Name=Os05t0371500-01;Locus_id=Os05g0371500;Note=Conserved hypothetical protein.;Transcript_evidence=AK064879 (DDBJ%2C Best hit);ORF_evidence=A2Y3X6 (UniProt);NIAS_FLcDNA=J013000J21;Expression=AK064879;TENOR=Os05t0371500-01;KEGG=Os05t0371500-01
Chr05	irgsp1_rep	five_prime_UTR	17881999	17882234	.	-	.	Parent=Os05t0371500-01
Chr05	irgsp1_rep	five_prime_UTR	17881322	17881398	.	-	.	Parent=Os05t0371500-01
Chr05	irgsp1_rep	CDS	17881001	17881183	.	-	0	Parent=Os05t0371500-01
Chr05	irgsp1_rep	three_prime_UTR	17880820	17881000	.	-	.	Parent=Os05t0371500-01
Chr05	irgsp1_rep	mRNA	17885559	17888744	.	-	.	ID=Os05t0371600-01;Name=Os05t0371600-01;Locus_id=Os05g0371600;CGSNL Gene Symbol=RLCK184;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 184;Oryzabase Gene Symbol Synonym(s)=OsRLCK184;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 184;Note=Similar to BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1.;Transcript_evidence=AK241301 (DDBJ%2C Best hit);ORF_evidence=B6T6U0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J065140A22;Oryzabase=18885;TENOR=Os05t0371600-01;KEGG=Os05t0371600-01
Chr05	irgsp1_rep	five_prime_UTR	17888641	17888744	.	-	.	Parent=Os05t0371600-01
Chr05	irgsp1_rep	CDS	17888487	17888640	.	-	0	Parent=Os05t0371600-01
Chr05	irgsp1_rep	CDS	17888168	17888388	.	-	2	Parent=Os05t0371600-01
Chr05	irgsp1_rep	CDS	17887596	17887722	.	-	0	Parent=Os05t0371600-01
Chr05	irgsp1_rep	CDS	17887455	17887526	.	-	2	Parent=Os05t0371600-01
Chr05	irgsp1_rep	CDS	17887108	17887291	.	-	2	Parent=Os05t0371600-01
Chr05	irgsp1_rep	CDS	17886699	17886831	.	-	1	Parent=Os05t0371600-01
Chr05	irgsp1_rep	CDS	17885862	17886107	.	-	0	Parent=Os05t0371600-01
Chr05	irgsp1_rep	three_prime_UTR	17885559	17885861	.	-	.	Parent=Os05t0371600-01
Chr05	irgsp1_rep	mRNA	17914214	17917811	.	-	.	ID=Os05t0372000-01;Name=Os05t0372000-01;Locus_id=Os05g0372000;Note=Ribosomal protein L22/L17 family protein.;Transcript_evidence=AK100218 (DDBJ%2C Best hit),AK069732 (DDBJ%2C Best hit);ORF_evidence=Q946Y2 (UniProt);NIAS_FLcDNA=J023045L06,J023033H05;TENOR=Os05t0372000-01
Chr05	irgsp1_rep	five_prime_UTR	17917767	17917811	.	-	.	Parent=Os05t0372000-01
Chr05	irgsp1_rep	CDS	17917662	17917766	.	-	0	Parent=Os05t0372000-01
Chr05	irgsp1_rep	CDS	17916526	17916627	.	-	0	Parent=Os05t0372000-01
Chr05	irgsp1_rep	CDS	17916035	17916430	.	-	0	Parent=Os05t0372000-01
Chr05	irgsp1_rep	three_prime_UTR	17914214	17916034	.	-	.	Parent=Os05t0372000-01
Chr05	irgsp1_rep	mRNA	17922839	17930228	.	+	.	ID=Os05t0372100-01;Name=Os05t0372100-01;Locus_id=Os05g0372100;CGSNL Gene Symbol=RLCK185;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 185;Oryzabase Gene Symbol Synonym(s)=OsRLCK185;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 185;Note=Similar to protein kinase family protein.;Transcript_evidence=AK111898 (DDBJ%2C Best hit);ORF_evidence=XP_002871824.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013064P06;Oryzabase=12338;Expression=AK111898;TENOR=Os05t0372100-01;KEGG=Os05t0372100-01
Chr05	irgsp1_rep	five_prime_UTR	17922839	17923150	.	+	.	Parent=Os05t0372100-01
Chr05	irgsp1_rep	CDS	17923151	17923262	.	+	0	Parent=Os05t0372100-01
Chr05	irgsp1_rep	CDS	17926331	17926527	.	+	2	Parent=Os05t0372100-01
Chr05	irgsp1_rep	CDS	17926730	17926919	.	+	0	Parent=Os05t0372100-01
Chr05	irgsp1_rep	CDS	17927556	17927947	.	+	2	Parent=Os05t0372100-01
Chr05	irgsp1_rep	CDS	17929069	17929653	.	+	0	Parent=Os05t0372100-01
Chr05	irgsp1_rep	three_prime_UTR	17929654	17930228	.	+	.	Parent=Os05t0372100-01
Chr05	irgsp1_rep	mRNA	17922844	17930282	.	+	.	ID=Os05t0372100-02;Name=Os05t0372100-02;Locus_id=Os05g0372100;CGSNL Gene Symbol=RLCK185;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 185;Oryzabase Gene Symbol Synonym(s)=OsRLCK185;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 185;Note=Similar to Receptor protein kinase-like protein.;Transcript_evidence=AK111832 (DDBJ%2C Best hit);ORF_evidence=XP_002871824.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J023128O09;Oryzabase=12338;Expression=AK111832;TENOR=Os05t0372100-02;KEGG=Os05t0372100-02
Chr05	irgsp1_rep	five_prime_UTR	17922844	17923150	.	+	.	Parent=Os05t0372100-02
Chr05	irgsp1_rep	CDS	17923151	17923262	.	+	0	Parent=Os05t0372100-02
Chr05	irgsp1_rep	CDS	17926331	17926527	.	+	2	Parent=Os05t0372100-02
Chr05	irgsp1_rep	CDS	17926730	17926919	.	+	0	Parent=Os05t0372100-02
Chr05	irgsp1_rep	CDS	17927556	17927699	.	+	2	Parent=Os05t0372100-02
Chr05	irgsp1_rep	CDS	17927814	17927947	.	+	2	Parent=Os05t0372100-02
Chr05	irgsp1_rep	CDS	17929069	17929653	.	+	0	Parent=Os05t0372100-02
Chr05	irgsp1_rep	three_prime_UTR	17929654	17930282	.	+	.	Parent=Os05t0372100-02
Chr05	irgsp1_rep	mRNA	17922861	17923936	.	+	.	ID=Os05t0372100-03;Name=Os05t0372100-03;Locus_id=Os05g0372100;CGSNL Gene Symbol=RLCK185;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 185;Oryzabase Gene Symbol Synonym(s)=OsRLCK185;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 185;Note=Hypothetical protein.;Transcript_evidence=AK107148 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-124-D11;Oryzabase=12338;TENOR=Os05t0372100-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	17922861	17923337	.	+	0	Parent=Os05t0372100-03
Chr05	irgsp1_rep	three_prime_UTR	17923338	17923936	.	+	.	Parent=Os05t0372100-03
Chr05	irgsp1_rep	mRNA	17922988	17930258	.	+	.	ID=Os05t0372100-04;Name=Os05t0372100-04;Locus_id=Os05g0372100;CGSNL Gene Symbol=RLCK185;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 185;Oryzabase Gene Symbol Synonym(s)=OsRLCK185;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 185;Note=Similar to protein kinase family protein.;Transcript_evidence=AK102474 (DDBJ%2C Best hit);ORF_evidence=XP_002871824.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033094H16;Oryzabase=12338;Expression=AK102474;TENOR=Os05t0372100-04;KEGG=Os05t0372100-04
Chr05	irgsp1_rep	five_prime_UTR	17922988	17923150	.	+	.	Parent=Os05t0372100-04
Chr05	irgsp1_rep	CDS	17923151	17923262	.	+	0	Parent=Os05t0372100-04
Chr05	irgsp1_rep	CDS	17926331	17926527	.	+	2	Parent=Os05t0372100-04
Chr05	irgsp1_rep	CDS	17926730	17926919	.	+	0	Parent=Os05t0372100-04
Chr05	irgsp1_rep	CDS	17927556	17927947	.	+	2	Parent=Os05t0372100-04
Chr05	irgsp1_rep	CDS	17929069	17929653	.	+	0	Parent=Os05t0372100-04
Chr05	irgsp1_rep	three_prime_UTR	17929654	17930258	.	+	.	Parent=Os05t0372100-04
Chr05	irgsp1_rep	mRNA	17926405	17930264	.	+	.	ID=Os05t0372100-05;Name=Os05t0372100-05;Locus_id=Os05g0372100;CGSNL Gene Symbol=RLCK185;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 185;Oryzabase Gene Symbol Synonym(s)=OsRLCK185;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 185;Note=Similar to protein kinase family protein.;Transcript_evidence=AK111926 (DDBJ%2C Best hit);ORF_evidence=XP_002871824.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-014-C09;Oryzabase=12338;Expression=AK111926;TENOR=Os05t0372100-05;KEGG=Os05t0372100-05
Chr05	irgsp1_rep	CDS	17926405	17926527	.	+	0	Parent=Os05t0372100-05
Chr05	irgsp1_rep	CDS	17926730	17926919	.	+	0	Parent=Os05t0372100-05
Chr05	irgsp1_rep	CDS	17927556	17927947	.	+	2	Parent=Os05t0372100-05
Chr05	irgsp1_rep	CDS	17929069	17929653	.	+	0	Parent=Os05t0372100-05
Chr05	irgsp1_rep	three_prime_UTR	17929654	17930264	.	+	.	Parent=Os05t0372100-05
Chr05	irgsp1_rep	mRNA	17932110	17933512	.	-	.	ID=Os05t0372200-00;Name=Os05t0372200-00;Locus_id=Os05g0372200;Note=Surfeit locus 6 family protein.;Transcript_evidence=tplb0001n12 (Wheat FLcDNA);ORF_evidence=NP_001055360.1 (RefSeq);InterPro=Surfeit locus 6 (IPR007019);TENOR=Os05t0372200-00;KEGG=Os05t0372200-00
Chr05	irgsp1_rep	five_prime_UTR	17933494	17933512	.	-	.	Parent=Os05t0372200-00
Chr05	irgsp1_rep	CDS	17932330	17933493	.	-	0	Parent=Os05t0372200-00
Chr05	irgsp1_rep	three_prime_UTR	17932110	17932329	.	-	.	Parent=Os05t0372200-00
Chr05	irgsp1_rep	mRNA	17934628	17941855	.	+	.	ID=Os05t0372300-01;Name=Os05t0372300-01;Locus_id=Os05g0372300;Note=CytoChrome P450 family protein.;Transcript_evidence=AK120018 (DDBJ%2C Best hit);ORF_evidence=Q8LL74 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=002-186-B11;Expression=AK120018;TENOR=Os05t0372300-01;KEGG=Os05t0372300-01
Chr05	irgsp1_rep	five_prime_UTR	17934628	17934669	.	+	.	Parent=Os05t0372300-01
Chr05	irgsp1_rep	CDS	17934670	17934967	.	+	0	Parent=Os05t0372300-01
Chr05	irgsp1_rep	CDS	17938960	17939177	.	+	2	Parent=Os05t0372300-01
Chr05	irgsp1_rep	CDS	17939421	17939665	.	+	0	Parent=Os05t0372300-01
Chr05	irgsp1_rep	CDS	17940285	17940654	.	+	1	Parent=Os05t0372300-01
Chr05	irgsp1_rep	CDS	17941169	17941597	.	+	0	Parent=Os05t0372300-01
Chr05	irgsp1_rep	three_prime_UTR	17941598	17941855	.	+	.	Parent=Os05t0372300-01
Chr05	irgsp1_rep	mRNA	17934667	17941597	.	-	.	ID=Os05t0372350-00;Name=Os05t0372350-00;Locus_id=Os05g0372350;Note=Hypothetical protein.;Transcript_evidence=tplb0028e19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0372350-00
Chr05	irgsp1_rep	five_prime_UTR	17941169	17941597	.	-	.	Parent=Os05t0372350-00
Chr05	irgsp1_rep	five_prime_UTR	17940289	17940654	.	-	.	Parent=Os05t0372350-00
Chr05	irgsp1_rep	five_prime_UTR	17939445	17939667	.	-	.	Parent=Os05t0372350-00
Chr05	irgsp1_rep	five_prime_UTR	17938976	17939207	.	-	.	Parent=Os05t0372350-00
Chr05	irgsp1_rep	CDS	17938966	17938975	.	-	0	Parent=Os05t0372350-00
Chr05	irgsp1_rep	CDS	17934667	17934973	.	-	2	Parent=Os05t0372350-00
Chr05	irgsp1_rep	mRNA	17942072	17945667	.	-	.	ID=Os05t0372400-01;Name=Os05t0372400-01;Locus_id=Os05g0372400;Note=Lipase%2C class 3 family protein.;Transcript_evidence=AK068781 (DDBJ%2C Best hit);ORF_evidence=B6T3Y7 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921);NIAS_FLcDNA=J013159D11;Expression=AK068781;TENOR=Os05t0372400-01;KEGG=Os05t0372400-01
Chr05	irgsp1_rep	five_prime_UTR	17945145	17945667	.	-	.	Parent=Os05t0372400-01
Chr05	irgsp1_rep	CDS	17945078	17945144	.	-	0	Parent=Os05t0372400-01
Chr05	irgsp1_rep	CDS	17944671	17944741	.	-	2	Parent=Os05t0372400-01
Chr05	irgsp1_rep	CDS	17944476	17944541	.	-	0	Parent=Os05t0372400-01
Chr05	irgsp1_rep	CDS	17944339	17944386	.	-	0	Parent=Os05t0372400-01
Chr05	irgsp1_rep	CDS	17944182	17944249	.	-	0	Parent=Os05t0372400-01
Chr05	irgsp1_rep	CDS	17943862	17943934	.	-	1	Parent=Os05t0372400-01
Chr05	irgsp1_rep	CDS	17943617	17943778	.	-	0	Parent=Os05t0372400-01
Chr05	irgsp1_rep	CDS	17942771	17942965	.	-	0	Parent=Os05t0372400-01
Chr05	irgsp1_rep	CDS	17942572	17942660	.	-	0	Parent=Os05t0372400-01
Chr05	irgsp1_rep	CDS	17942298	17942487	.	-	1	Parent=Os05t0372400-01
Chr05	irgsp1_rep	three_prime_UTR	17942072	17942297	.	-	.	Parent=Os05t0372400-01
Chr05	irgsp1_rep	mRNA	17951299	17954214	.	+	.	ID=Os05t0372800-01;Name=Os05t0372800-01;Locus_id=Os05g0372800;Oryzabase Gene Symbol Synonym(s)=OsFbox257%2C Os_F0400;Oryzabase Gene Name Synonym(s)=F-box protein 257;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK108087 (DDBJ%2C Best hit);ORF_evidence=B6T548 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-138-H10;Oryzabase=17041;Expression=AK108087;TENOR=Os05t0372800-01;KEGG=Os05t0372800-01
Chr05	irgsp1_rep	five_prime_UTR	17951299	17951340	.	+	.	Parent=Os05t0372800-01
Chr05	irgsp1_rep	CDS	17951341	17951436	.	+	0	Parent=Os05t0372800-01
Chr05	irgsp1_rep	CDS	17951539	17951697	.	+	0	Parent=Os05t0372800-01
Chr05	irgsp1_rep	CDS	17952971	17953222	.	+	0	Parent=Os05t0372800-01
Chr05	irgsp1_rep	CDS	17953767	17954009	.	+	0	Parent=Os05t0372800-01
Chr05	irgsp1_rep	three_prime_UTR	17954010	17954214	.	+	.	Parent=Os05t0372800-01
Chr05	irgsp1_rep	mRNA	17955526	17956076	.	-	.	ID=Os05t0372833-00;Name=Os05t0372833-00;Locus_id=Os05g0372833;Note=Hypothetical conserved gene.;Transcript_evidence=CT836472 (DDBJ%2C Best hit);ORF_evidence=F2EDE6 (UniProt);TENOR=Os05t0372833-00;KEGG=Os05t0372833-00
Chr05	irgsp1_rep	five_prime_UTR	17955961	17956076	.	-	.	Parent=Os05t0372833-00
Chr05	irgsp1_rep	CDS	17955811	17955960	.	-	0	Parent=Os05t0372833-00
Chr05	irgsp1_rep	three_prime_UTR	17955526	17955810	.	-	.	Parent=Os05t0372833-00
Chr05	irgsp1_rep	mRNA	17955565	17956079	.	+	.	ID=Os05t0372866-01;Name=Os05t0372866-01;Locus_id=Os05g0372866;Note=Conserved hypothetical protein.;Transcript_evidence=AK241563 (DDBJ%2C Best hit);ORF_evidence=A2Y3Y6 (UniProt);NIAS_FLcDNA=J065179A03;TENOR=Os05t0372866-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	17955565	17955826	.	+	.	Parent=Os05t0372866-01
Chr05	irgsp1_rep	CDS	17955827	17956042	.	+	0	Parent=Os05t0372866-01
Chr05	irgsp1_rep	three_prime_UTR	17956043	17956079	.	+	.	Parent=Os05t0372866-01
Chr05	irgsp1_rep	mRNA	17962057	17964229	.	-	.	ID=Os05t0372900-01;Name=Os05t0372900-01;Locus_id=Os05g0372900;Note=Conserved hypothetical protein.;Transcript_evidence=AK072757 (DDBJ%2C Best hit);ORF_evidence=B9FHR9 (UniProt);NIAS_FLcDNA=J023142H17;TENOR=Os05t0372900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	17964139	17964229	.	-	.	Parent=Os05t0372900-01
Chr05	irgsp1_rep	CDS	17963613	17964138	.	-	0	Parent=Os05t0372900-01
Chr05	irgsp1_rep	CDS	17962177	17962469	.	-	2	Parent=Os05t0372900-01
Chr05	irgsp1_rep	three_prime_UTR	17962057	17962176	.	-	.	Parent=Os05t0372900-01
Chr05	irgsp1_rep	mRNA	17965061	17970698	.	-	.	ID=Os05t0373000-01;Name=Os05t0373000-01;Locus_id=Os05g0373000;Note=PapD-like domain containing protein.;Transcript_evidence=AK102012 (DDBJ%2C Best hit);ORF_evidence=B8AXT6 (UniProt);GO=Molecular Function: structural molecule activity (GO:0005198);InterPro=Major sperm protein (IPR000535),PapD-like (IPR008962);NIAS_FLcDNA=J033080D06;Expression=AK102012;TENOR=Os05t0373000-01;KEGG=Os05t0373000-01
Chr05	irgsp1_rep	five_prime_UTR	17970467	17970698	.	-	.	Parent=Os05t0373000-01
Chr05	irgsp1_rep	CDS	17970409	17970466	.	-	0	Parent=Os05t0373000-01
Chr05	irgsp1_rep	CDS	17968187	17968257	.	-	2	Parent=Os05t0373000-01
Chr05	irgsp1_rep	CDS	17967870	17967951	.	-	0	Parent=Os05t0373000-01
Chr05	irgsp1_rep	CDS	17967374	17967489	.	-	2	Parent=Os05t0373000-01
Chr05	irgsp1_rep	CDS	17966420	17967274	.	-	0	Parent=Os05t0373000-01
Chr05	irgsp1_rep	CDS	17966054	17966116	.	-	0	Parent=Os05t0373000-01
Chr05	irgsp1_rep	CDS	17965864	17965941	.	-	0	Parent=Os05t0373000-01
Chr05	irgsp1_rep	CDS	17965449	17965559	.	-	0	Parent=Os05t0373000-01
Chr05	irgsp1_rep	three_prime_UTR	17965061	17965448	.	-	.	Parent=Os05t0373000-01
Chr05	irgsp1_rep	mRNA	17983282	17989897	.	+	.	ID=Os05t0373300-01;Name=Os05t0373300-01;Locus_id=Os05g0373300;RAP-DB Gene Symbol Synonym(s)=OsBON3;RAP-DB Gene Name Synonym(s)=BONZAI 3;CGSNL Gene Symbol=BON3;CGSNL Gene Name=BONZAI 3;Oryzabase Gene Symbol Synonym(s)=OsBON3;Note=Copine protein%2C Negative regulation of disease resistance%2C Positive regulation of plant growth and development;Transcript_evidence=AK240945;ORF_evidence=A0A0P0WLH0;InterPro=C2 domain superfamily (IPR035892),von Willebrand factor A-like domain superfamily (IPR036465),C2 domain (IPR000008),Copine%2C C2B domain (IPR037768),Copine (IPR010734),von Willebrand factor%2C type A (IPR002035);NIAS_FLcDNA=J065042M02;Manual Curation=October 19%2C 2018;Literature_PMID=29356349;Oryzabase=22264;TENOR=Os05t0373300-01;KEGG=Os05t0373300-01;Subcellular location=plasma membrane (GO:0005886)
Chr05	irgsp1_rep	five_prime_UTR	17983282	17983370	.	+	.	Parent=Os05t0373300-01
Chr05	irgsp1_rep	CDS	17983371	17983556	.	+	0	Parent=Os05t0373300-01
Chr05	irgsp1_rep	CDS	17985129	17985176	.	+	0	Parent=Os05t0373300-01
Chr05	irgsp1_rep	CDS	17985634	17985779	.	+	0	Parent=Os05t0373300-01
Chr05	irgsp1_rep	CDS	17985869	17985917	.	+	1	Parent=Os05t0373300-01
Chr05	irgsp1_rep	CDS	17986513	17986569	.	+	0	Parent=Os05t0373300-01
Chr05	irgsp1_rep	CDS	17986713	17986880	.	+	0	Parent=Os05t0373300-01
Chr05	irgsp1_rep	CDS	17986968	17987100	.	+	0	Parent=Os05t0373300-01
Chr05	irgsp1_rep	CDS	17987201	17987264	.	+	2	Parent=Os05t0373300-01
Chr05	irgsp1_rep	CDS	17987356	17987443	.	+	1	Parent=Os05t0373300-01
Chr05	irgsp1_rep	CDS	17987530	17987641	.	+	0	Parent=Os05t0373300-01
Chr05	irgsp1_rep	CDS	17987725	17987801	.	+	2	Parent=Os05t0373300-01
Chr05	irgsp1_rep	CDS	17987875	17988012	.	+	0	Parent=Os05t0373300-01
Chr05	irgsp1_rep	CDS	17988677	17988841	.	+	0	Parent=Os05t0373300-01
Chr05	irgsp1_rep	CDS	17988920	17989033	.	+	0	Parent=Os05t0373300-01
Chr05	irgsp1_rep	CDS	17989279	17989375	.	+	0	Parent=Os05t0373300-01
Chr05	irgsp1_rep	CDS	17989495	17989643	.	+	2	Parent=Os05t0373300-01
Chr05	irgsp1_rep	three_prime_UTR	17989644	17989897	.	+	.	Parent=Os05t0373300-01
Chr05	irgsp1_rep	mRNA	17995247	18001004	.	+	.	ID=Os05t0373400-01;Name=Os05t0373400-01;Locus_id=Os05g0373400;Note=Ribonucleoprotein%2C BRUNO-like domain containing protein.;Transcript_evidence=AK073796 (DDBJ%2C Best hit);ORF_evidence=B8AXN9 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723);InterPro=RNA recognition motif domain (IPR000504),Paraneoplastic encephalomyelitis antigen (IPR002343),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033067B10;Expression=AK073796;TENOR=Os05t0373400-01;KEGG=Os05t0373400-01
Chr05	irgsp1_rep	five_prime_UTR	17995247	17995337	.	+	.	Parent=Os05t0373400-01
Chr05	irgsp1_rep	CDS	17995338	17995599	.	+	0	Parent=Os05t0373400-01
Chr05	irgsp1_rep	CDS	17997031	17997113	.	+	2	Parent=Os05t0373400-01
Chr05	irgsp1_rep	CDS	17998144	17998195	.	+	0	Parent=Os05t0373400-01
Chr05	irgsp1_rep	CDS	17998307	17998432	.	+	2	Parent=Os05t0373400-01
Chr05	irgsp1_rep	CDS	17998544	17998626	.	+	2	Parent=Os05t0373400-01
Chr05	irgsp1_rep	CDS	17999380	17999562	.	+	0	Parent=Os05t0373400-01
Chr05	irgsp1_rep	CDS	17999984	18000320	.	+	0	Parent=Os05t0373400-01
Chr05	irgsp1_rep	CDS	18000409	18000552	.	+	2	Parent=Os05t0373400-01
Chr05	irgsp1_rep	CDS	18000628	18000758	.	+	2	Parent=Os05t0373400-01
Chr05	irgsp1_rep	three_prime_UTR	18000759	18001004	.	+	.	Parent=Os05t0373400-01
Chr05	irgsp1_rep	mRNA	17995659	18000966	.	+	.	ID=Os05t0373400-02;Name=Os05t0373400-02;Locus_id=Os05g0373400;Note=Similar to cDNA clone:J033067B10%2C full insert sequence.;Transcript_evidence=AK073553 (DDBJ%2C Best hit);ORF_evidence=B9FP92 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723);InterPro=RNA recognition motif domain (IPR000504),Paraneoplastic encephalomyelitis antigen (IPR002343),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033045O20;Expression=AK073553;TENOR=Os05t0373400-02;KEGG=Os05t0373400-02
Chr05	irgsp1_rep	five_prime_UTR	17995659	17996840	.	+	.	Parent=Os05t0373400-02
Chr05	irgsp1_rep	CDS	17996841	17997113	.	+	0	Parent=Os05t0373400-02
Chr05	irgsp1_rep	CDS	17998144	17998195	.	+	0	Parent=Os05t0373400-02
Chr05	irgsp1_rep	CDS	17998307	17998432	.	+	2	Parent=Os05t0373400-02
Chr05	irgsp1_rep	CDS	17998544	17998626	.	+	2	Parent=Os05t0373400-02
Chr05	irgsp1_rep	CDS	17999380	17999562	.	+	0	Parent=Os05t0373400-02
Chr05	irgsp1_rep	CDS	17999984	18000320	.	+	0	Parent=Os05t0373400-02
Chr05	irgsp1_rep	CDS	18000409	18000552	.	+	2	Parent=Os05t0373400-02
Chr05	irgsp1_rep	CDS	18000628	18000758	.	+	2	Parent=Os05t0373400-02
Chr05	irgsp1_rep	three_prime_UTR	18000759	18000966	.	+	.	Parent=Os05t0373400-02
Chr05	irgsp1_rep	mRNA	18002686	18007276	.	-	.	ID=Os05t0373500-00;Name=Os05t0373500-00;Locus_id=Os05g0373500;Note=Hypothetical conserved gene.;Transcript_evidence=tplb0008a19 (Wheat FLcDNA);ORF_evidence=XP_002440994.1 (RefSeq);TENOR=Os05t0373500-00;KEGG=Os05t0373500-00
Chr05	irgsp1_rep	five_prime_UTR	18007250	18007276	.	-	.	Parent=Os05t0373500-00
Chr05	irgsp1_rep	CDS	18007000	18007249	.	-	0	Parent=Os05t0373500-00
Chr05	irgsp1_rep	CDS	18004893	18005002	.	-	2	Parent=Os05t0373500-00
Chr05	irgsp1_rep	CDS	18004428	18004799	.	-	0	Parent=Os05t0373500-00
Chr05	irgsp1_rep	CDS	18002686	18003519	.	-	0	Parent=Os05t0373500-00
Chr05	irgsp1_rep	mRNA	18012302	18014219	.	+	.	ID=Os05t0373700-01;Name=Os05t0373700-01;Locus_id=Os05g0373700;Note=Similar to Nascent polypeptide-associated complex alpha subunit-like protein 3 (NAC-alpha-like protein 3) (Alpha-NAC-like protein 3).;Transcript_evidence=AK058906 (DDBJ%2C Best hit);ORF_evidence=NP_001148944.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal (IPR000449),Nascent polypeptide-associated complex NAC (IPR002715),Nascent polypeptide-associated complex%2C alpha subunit (IPR016641);NIAS_FLcDNA=001-008-D09;Expression=AK058906;TENOR=Os05t0373700-01;KEGG=Os05t0373700-01
Chr05	irgsp1_rep	five_prime_UTR	18012302	18012380	.	+	.	Parent=Os05t0373700-01
Chr05	irgsp1_rep	CDS	18012381	18012452	.	+	0	Parent=Os05t0373700-01
Chr05	irgsp1_rep	CDS	18012847	18012931	.	+	0	Parent=Os05t0373700-01
Chr05	irgsp1_rep	CDS	18013434	18013558	.	+	2	Parent=Os05t0373700-01
Chr05	irgsp1_rep	CDS	18013651	18013986	.	+	0	Parent=Os05t0373700-01
Chr05	irgsp1_rep	three_prime_UTR	18013987	18014219	.	+	.	Parent=Os05t0373700-01
Chr05	irgsp1_rep	mRNA	18016742	18020353	.	+	.	ID=Os05t0373900-01;Name=Os05t0373900-01;Locus_id=Os05g0373900;Note=Similar to Eukaryotic peptide chain release factor subunit 1 (eRF1) (Eukaryotic release factor 1) (TB3-1) (Cl1 protein).;Transcript_evidence=AK064587 (DDBJ%2C Best hit);ORF_evidence=NP_001147586.1 (RefSeq);GO=Biological Process: translational termination (GO:0006415),Cellular Component: cytoplasm (GO:0005737),Molecular Function: translation release factor activity%2C codon specific (GO:0016149);InterPro=Peptide chain release factor eRF1/aRF1 (IPR004403),eRF1 domain 1/Pelota-like (IPR005140),eRF1 domain 2 (IPR005141),eRF1 domain 3 (IPR005142),Peptide Chain Release Factor eRF1/aRF1%2C N-terminal (IPR024049);NIAS_FLcDNA=002-112-G01;Expression=AK064587;TENOR=Os05t0373900-01;KEGG=Os05t0373900-01
Chr05	irgsp1_rep	five_prime_UTR	18016742	18016832	.	+	.	Parent=Os05t0373900-01
Chr05	irgsp1_rep	five_prime_UTR	18018394	18018421	.	+	.	Parent=Os05t0373900-01
Chr05	irgsp1_rep	CDS	18018422	18019744	.	+	0	Parent=Os05t0373900-01
Chr05	irgsp1_rep	three_prime_UTR	18019745	18019861	.	+	.	Parent=Os05t0373900-01
Chr05	irgsp1_rep	three_prime_UTR	18019940	18020353	.	+	.	Parent=Os05t0373900-01
Chr05	irgsp1_rep	mRNA	18020712	18039129	.	-	.	ID=Os05t0374000-01;Name=Os05t0374000-01;Locus_id=Os05g0374000;Note=Hypothetical protein.;Transcript_evidence=AK100353 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023083G14;TENOR=Os05t0374000-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	18038935	18039129	.	-	.	Parent=Os05t0374000-01
Chr05	irgsp1_rep	five_prime_UTR	18034156	18034703	.	-	.	Parent=Os05t0374000-01
Chr05	irgsp1_rep	five_prime_UTR	18033948	18034034	.	-	.	Parent=Os05t0374000-01
Chr05	irgsp1_rep	five_prime_UTR	18033190	18033826	.	-	.	Parent=Os05t0374000-01
Chr05	irgsp1_rep	CDS	18032875	18033189	.	-	0	Parent=Os05t0374000-01
Chr05	irgsp1_rep	three_prime_UTR	18032407	18032874	.	-	.	Parent=Os05t0374000-01
Chr05	irgsp1_rep	three_prime_UTR	18031181	18031330	.	-	.	Parent=Os05t0374000-01
Chr05	irgsp1_rep	three_prime_UTR	18030973	18031037	.	-	.	Parent=Os05t0374000-01
Chr05	irgsp1_rep	three_prime_UTR	18020712	18021187	.	-	.	Parent=Os05t0374000-01
Chr05	irgsp1_rep	mRNA	18032481	18035180	.	+	.	ID=Os05t0374200-01;Name=Os05t0374200-01;Locus_id=Os05g0374200;RAP-DB Gene Symbol Synonym(s)=OsCKX9;RAP-DB Gene Name Synonym(s)=CYTOKININ OXIDASE/DEHYDROGENASE 9;CGSNL Gene Symbol=CKX9;CGSNL Gene Name=CYTOKININ  OXIDASE/DEHYDROGENASE 9;Oryzabase Gene Symbol Synonym(s)=OsCKX9;Oryzabase Gene Name Synonym(s)=cytokinin oxidase 9;Note=Cytokinin oxidase%2C Regulation of cytokinin signaling pathway%2C "Regulation of tillering%2C plant height%2C and panicle size";Transcript_evidence=AK450260 (Wheat FLcDNA);ORF_evidence=Q75K78;GO=Biological Process: cytokinin metabolic process (GO:0009690),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: cytokinin dehydrogenase activity (GO:0019139),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: FAD binding (GO:0071949);InterPro=FAD-binding%2C type PCMH%2C subdomain 1 (IPR016167),FAD-binding%2C type PCMH-like superfamily (IPR036318),FAD-binding%2C type PCMH%2C subdomain 2 (IPR016169),FAD-linked oxidase-like%2C C-terminal (IPR016164),Cytokinin dehydrogenase%2C C-terminal domain superfamily (IPR016170),FAD-binding domain%2C PCMH-type (IPR016166),FAD linked oxidase%2C N-terminal (IPR006094),Cytokinin dehydrogenase 1%2C FAD/cytokinin binding domain (IPR015345),Oxygen oxidoreductase covalent FAD-binding site (IPR006093);Manual Curation=August 1%2C 2019;Literature_PMID=31235564,15976269;Oryzabase=8399;TENOR=Os05t0374200-00;Subcellular location=nucleus (GO:0005634), cytosol (GO:0005829)
Chr05	irgsp1_rep	five_prime_UTR	18032481	18032723	.	+	.	Parent=Os05t0374200-01
Chr05	irgsp1_rep	five_prime_UTR	18033242	18033250	.	+	.	Parent=Os05t0374200-01
Chr05	irgsp1_rep	CDS	18033251	18033842	.	+	0	Parent=Os05t0374200-01
Chr05	irgsp1_rep	CDS	18033921	18034048	.	+	2	Parent=Os05t0374200-01
Chr05	irgsp1_rep	CDS	18034132	18034392	.	+	0	Parent=Os05t0374200-01
Chr05	irgsp1_rep	CDS	18034494	18034756	.	+	0	Parent=Os05t0374200-01
Chr05	irgsp1_rep	CDS	18034841	18035162	.	+	1	Parent=Os05t0374200-01
Chr05	irgsp1_rep	three_prime_UTR	18035163	18035180	.	+	.	Parent=Os05t0374200-01
Chr05	irgsp1_rep	mRNA	18045476	18048734	.	+	.	ID=Os05t0374500-01;Name=Os05t0374500-01;Locus_id=Os05g0374500;Oryzabase Gene Symbol Synonym(s)=OsDJC31%2C DJC31;Oryzabase Gene Name Synonym(s)=type III J protein 31%2C rice DJC31 homolog;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK064447 (DDBJ%2C Best hit);ORF_evidence=B9FP94 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=002-110-F02;Oryzabase=19631;TENOR=Os05t0374500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	18045476	18045477	.	+	.	Parent=Os05t0374500-01
Chr05	irgsp1_rep	CDS	18045478	18047519	.	+	0	Parent=Os05t0374500-01
Chr05	irgsp1_rep	CDS	18047655	18047894	.	+	1	Parent=Os05t0374500-01
Chr05	irgsp1_rep	CDS	18048531	18048693	.	+	1	Parent=Os05t0374500-01
Chr05	irgsp1_rep	three_prime_UTR	18048694	18048734	.	+	.	Parent=Os05t0374500-01
Chr05	irgsp1_rep	mRNA	18052645	18056393	.	+	.	ID=Os05t0374600-01;Name=Os05t0374600-01;Locus_id=Os05g0374600;Oryzabase Gene Symbol Synonym(s)=OsDjC49%2C OsDJC31%2C DJC31;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C49%2C type III J protein 31%2C rice DJC31 homolog;Note=Heat shock protein DnaJ%2C N-terminal domain containing protein.;Transcript_evidence=AK110774 (DDBJ%2C Best hit);ORF_evidence=B9FP94 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Heat shock protein DnaJ%2C conserved site (IPR018253),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=002-171-B04;Oryzabase=12206,19631;TENOR=Os05t0374600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	18052645	18052645	.	+	.	Parent=Os05t0374600-01
Chr05	irgsp1_rep	CDS	18052646	18052711	.	+	0	Parent=Os05t0374600-01
Chr05	irgsp1_rep	CDS	18052825	18053030	.	+	0	Parent=Os05t0374600-01
Chr05	irgsp1_rep	CDS	18053129	18053198	.	+	1	Parent=Os05t0374600-01
Chr05	irgsp1_rep	CDS	18053669	18053875	.	+	0	Parent=Os05t0374600-01
Chr05	irgsp1_rep	CDS	18054025	18054248	.	+	0	Parent=Os05t0374600-01
Chr05	irgsp1_rep	CDS	18054765	18054843	.	+	1	Parent=Os05t0374600-01
Chr05	irgsp1_rep	CDS	18054916	18055053	.	+	0	Parent=Os05t0374600-01
Chr05	irgsp1_rep	CDS	18055602	18055729	.	+	0	Parent=Os05t0374600-01
Chr05	irgsp1_rep	CDS	18055936	18056038	.	+	1	Parent=Os05t0374600-01
Chr05	irgsp1_rep	three_prime_UTR	18056039	18056393	.	+	.	Parent=Os05t0374600-01
Chr05	irgsp1_rep	mRNA	18064251	18064744	.	+	.	ID=Os05t0374932-00;Name=Os05t0374932-00;Locus_id=Os05g0374932;Note=Hypothetical gene.;Transcript_evidence=BT084685 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0374932-00;KEGG=Os05t0374932-00
Chr05	irgsp1_rep	five_prime_UTR	18064251	18064259	.	+	.	Parent=Os05t0374932-00
Chr05	irgsp1_rep	CDS	18064260	18064739	.	+	0	Parent=Os05t0374932-00
Chr05	irgsp1_rep	three_prime_UTR	18064740	18064744	.	+	.	Parent=Os05t0374932-00
Chr05	irgsp1_rep	mRNA	18075301	18081280	.	-	.	ID=Os05t0375100-00;Name=Os05t0375100-00;Locus_id=Os05g0375100;CGSNL Gene Symbol=HXK10;CGSNL Gene Name=HEXOKINASE-10;Oryzabase Gene Symbol Synonym(s)=OsHXK10;Oryzabase Gene Name Synonym(s)=Hexokinase 10;Note=Similar to Hexokinase-10.;Transcript_evidence=AY884170 (DDBJ%2C Best hit);ORF_evidence=Q2KNB5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: glycolysis (GO:0006096),Molecular Function: hexokinase activity (GO:0004396),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Hexokinase (IPR001312),Hexokinase%2C conserved site (IPR019807),Hexokinase%2C N-terminal (IPR022672),Hexokinase%2C C-terminal (IPR022673);Oryzabase=9002;TENOR=Os05t0375100-00;KEGG=Os05t0375100-00 (EC:2.7.1.1)
Chr05	irgsp1_rep	five_prime_UTR	18081177	18081280	.	-	.	Parent=Os05t0375100-00
Chr05	irgsp1_rep	CDS	18080893	18081176	.	-	0	Parent=Os05t0375100-00
Chr05	irgsp1_rep	CDS	18079078	18079225	.	-	1	Parent=Os05t0375100-00
Chr05	irgsp1_rep	CDS	18078835	18079002	.	-	0	Parent=Os05t0375100-00
Chr05	irgsp1_rep	CDS	18078373	18078447	.	-	0	Parent=Os05t0375100-00
Chr05	irgsp1_rep	CDS	18076992	18077147	.	-	0	Parent=Os05t0375100-00
Chr05	irgsp1_rep	CDS	18076776	18076874	.	-	0	Parent=Os05t0375100-00
Chr05	irgsp1_rep	CDS	18076572	18076699	.	-	0	Parent=Os05t0375100-00
Chr05	irgsp1_rep	CDS	18075792	18075873	.	-	1	Parent=Os05t0375100-00
Chr05	irgsp1_rep	CDS	18075314	18075688	.	-	0	Parent=Os05t0375100-00
Chr05	irgsp1_rep	three_prime_UTR	18075301	18075313	.	-	.	Parent=Os05t0375100-00
Chr05	irgsp1_rep	mRNA	18106229	18110985	.	-	.	ID=Os05t0375400-01;Name=Os05t0375400-01;Locus_id=Os05g0375400;RAP-DB Gene Symbol Synonym(s)=OsEGL1;RAP-DB Gene Name Synonym(s)=endo-(1%2C3%3B1%2C4)-&beta%3B-glucanase 1;Oryzabase Gene Symbol Synonym(s)=OsPR2%2C Gns1%2C OsEGL1;Oryzabase Gene Name Synonym(s)=(1%2C3%3B1%2C4)-b-glucanase%2C (1%2C3%3B1%2C4)-beta-glucanase%2C pathogenesis-related gene 2%2C endo-(1%2C3%3B1%2C4)-beta-glucanase 1;Note=Endo-(1%2C3%3B1%2C4)-&beta%3B-glucanase%2C "Response to wounding%2C methyl jasmonate%2C abscisicacid and ethephon";Transcript_evidence=AK121825,AK060867;ORF_evidence=Q75K72;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase superfamily (IPR017853),Glycoside hydrolase family 17 (IPR000490);NIAS_FLcDNA=J033099G01,001-034-H03;Manual Curation=October 28%2C 2020;Literature_PMID=19570592;Oryzabase=11216;Expression=AK121825;TENOR=Os05t0375400-01;KEGG=Os05t0375400-01
Chr05	irgsp1_rep	five_prime_UTR	18110856	18110985	.	-	.	Parent=Os05t0375400-01
Chr05	irgsp1_rep	CDS	18110783	18110855	.	-	0	Parent=Os05t0375400-01
Chr05	irgsp1_rep	CDS	18106699	18107630	.	-	2	Parent=Os05t0375400-01
Chr05	irgsp1_rep	three_prime_UTR	18106229	18106698	.	-	.	Parent=Os05t0375400-01
Chr05	irgsp1_rep	mRNA	18113231	18114580	.	-	.	ID=Os05t0375466-00;Name=Os05t0375466-00;Locus_id=Os05g0375466;Note=Non-protein coding transcript.;Transcript_evidence=CT836401 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os05t0375466-00
Chr05	irgsp1_rep	exon	18113231	18114580	.	-	.	Parent=Os05t0375466-00
Chr05	irgsp1_rep	mRNA	18126333	18129652	.	-	.	ID=Os05t0375532-01;Name=Os05t0375532-01;Locus_id=Os05g0375532;Note=Hypothetical gene.;Transcript_evidence=AK287793 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065174B09;TENOR=Os05t0375532-01;KEGG=Os05t0375532-01
Chr05	irgsp1_rep	five_prime_UTR	18129209	18129652	.	-	.	Parent=Os05t0375532-01
Chr05	irgsp1_rep	five_prime_UTR	18128954	18129138	.	-	.	Parent=Os05t0375532-01
Chr05	irgsp1_rep	five_prime_UTR	18128096	18128310	.	-	.	Parent=Os05t0375532-01
Chr05	irgsp1_rep	five_prime_UTR	18127485	18127683	.	-	.	Parent=Os05t0375532-01
Chr05	irgsp1_rep	five_prime_UTR	18127211	18127231	.	-	.	Parent=Os05t0375532-01
Chr05	irgsp1_rep	CDS	18127014	18127210	.	-	0	Parent=Os05t0375532-01
Chr05	irgsp1_rep	CDS	18126440	18126608	.	-	1	Parent=Os05t0375532-01
Chr05	irgsp1_rep	three_prime_UTR	18126333	18126439	.	-	.	Parent=Os05t0375532-01
Chr05	irgsp1_rep	mRNA	18126363	18129636	.	+	.	ID=Os05t0375600-00;Name=Os05t0375600-00;Locus_id=Os05g0375600;Note=Similar to Peptide chain release factor 2.;Transcript_evidence=AK376656 (DDBJ);ORF_evidence=B6SSD2 (UniProt);TENOR=Os05t0375600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	18126363	18126448	.	+	.	Parent=Os05t0375600-00
Chr05	irgsp1_rep	CDS	18126449	18126608	.	+	0	Parent=Os05t0375600-00
Chr05	irgsp1_rep	CDS	18127014	18127231	.	+	2	Parent=Os05t0375600-00
Chr05	irgsp1_rep	CDS	18127485	18127671	.	+	0	Parent=Os05t0375600-00
Chr05	irgsp1_rep	CDS	18128079	18128215	.	+	2	Parent=Os05t0375600-00
Chr05	irgsp1_rep	three_prime_UTR	18128216	18128310	.	+	.	Parent=Os05t0375600-00
Chr05	irgsp1_rep	three_prime_UTR	18129005	18129138	.	+	.	Parent=Os05t0375600-00
Chr05	irgsp1_rep	three_prime_UTR	18129209	18129636	.	+	.	Parent=Os05t0375600-00
Chr05	irgsp1_rep	mRNA	18135817	18137269	.	-	.	ID=Os05t0375700-00;Name=Os05t0375700-00;Locus_id=Os05g0375700;Note=Hypothetical conserved gene.;Transcript_evidence=BT054511 (DDBJ);ORF_evidence=Q6AUQ1 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);TENOR=Os05t0375700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	18137268	18137269	.	-	.	Parent=Os05t0375700-00
Chr05	irgsp1_rep	CDS	18135822	18137267	.	-	0	Parent=Os05t0375700-00
Chr05	irgsp1_rep	three_prime_UTR	18135817	18135821	.	-	.	Parent=Os05t0375700-00
Chr05	irgsp1_rep	mRNA	18135842	18137216	.	+	.	ID=Os05t0375850-00;Name=Os05t0375850-00;Locus_id=Os05g0375850;Note=Hypothetical protein.;Transcript_evidence=AK360759 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0375850-00
Chr05	irgsp1_rep	five_prime_UTR	18135842	18135842	.	+	.	Parent=Os05t0375850-00
Chr05	irgsp1_rep	CDS	18135843	18136253	.	+	0	Parent=Os05t0375850-00
Chr05	irgsp1_rep	CDS	18136359	18136829	.	+	0	Parent=Os05t0375850-00
Chr05	irgsp1_rep	CDS	18136890	18137216	.	+	0	Parent=Os05t0375850-00
Chr05	irgsp1_rep	mRNA	18148238	18157670	.	-	.	ID=Os05t0376000-00;Name=Os05t0376000-00;Locus_id=Os05g0376000;Note=Hypothetical conserved gene.;Transcript_evidence=AK360997 (DDBJ);ORF_evidence=F2D189 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);TENOR=Os05t0376000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	18157557	18157670	.	-	0	Parent=Os05t0376000-00
Chr05	irgsp1_rep	CDS	18157352	18157440	.	-	0	Parent=Os05t0376000-00
Chr05	irgsp1_rep	CDS	18157229	18157274	.	-	1	Parent=Os05t0376000-00
Chr05	irgsp1_rep	CDS	18156057	18156111	.	-	0	Parent=Os05t0376000-00
Chr05	irgsp1_rep	CDS	18155234	18155310	.	-	2	Parent=Os05t0376000-00
Chr05	irgsp1_rep	CDS	18149220	18149358	.	-	0	Parent=Os05t0376000-00
Chr05	irgsp1_rep	CDS	18149028	18149137	.	-	2	Parent=Os05t0376000-00
Chr05	irgsp1_rep	three_prime_UTR	18149004	18149027	.	-	.	Parent=Os05t0376000-00
Chr05	irgsp1_rep	three_prime_UTR	18148832	18148936	.	-	.	Parent=Os05t0376000-00
Chr05	irgsp1_rep	three_prime_UTR	18148569	18148706	.	-	.	Parent=Os05t0376000-00
Chr05	irgsp1_rep	three_prime_UTR	18148238	18148330	.	-	.	Parent=Os05t0376000-00
Chr05	irgsp1_rep	mRNA	18158247	18161024	.	+	.	ID=Os05t0376200-00;Name=Os05t0376200-00;Locus_id=Os05g0376200;Note=ATPase%2C AAA+ type%2C core domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001055380.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);TENOR=Os05t0376200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	18158247	18158302	.	+	0	Parent=Os05t0376200-00
Chr05	irgsp1_rep	CDS	18158489	18158588	.	+	1	Parent=Os05t0376200-00
Chr05	irgsp1_rep	CDS	18158752	18159036	.	+	0	Parent=Os05t0376200-00
Chr05	irgsp1_rep	CDS	18159107	18159276	.	+	0	Parent=Os05t0376200-00
Chr05	irgsp1_rep	CDS	18159635	18159763	.	+	1	Parent=Os05t0376200-00
Chr05	irgsp1_rep	CDS	18160362	18160458	.	+	1	Parent=Os05t0376200-00
Chr05	irgsp1_rep	CDS	18160571	18160648	.	+	0	Parent=Os05t0376200-00
Chr05	irgsp1_rep	CDS	18160727	18160888	.	+	0	Parent=Os05t0376200-00
Chr05	irgsp1_rep	CDS	18160926	18161024	.	+	0	Parent=Os05t0376200-00
Chr05	irgsp1_rep	mRNA	18161337	18169055	.	-	.	ID=Os05t0376300-01;Name=Os05t0376300-01;Locus_id=Os05g0376300;Note=Similar to cDNA%2C clone: J065201C14%2C full insert sequence.;Transcript_evidence=AK103812 (DDBJ%2C Best hit);ORF_evidence=B7F8Z9 (UniProt);NIAS_FLcDNA=J033147B21;Expression=AK103812;TENOR=Os05t0376300-01;KEGG=Os05t0376300-01
Chr05	irgsp1_rep	five_prime_UTR	18168779	18169055	.	-	.	Parent=Os05t0376300-01
Chr05	irgsp1_rep	five_prime_UTR	18163600	18163643	.	-	.	Parent=Os05t0376300-01
Chr05	irgsp1_rep	CDS	18163360	18163599	.	-	0	Parent=Os05t0376300-01
Chr05	irgsp1_rep	three_prime_UTR	18162521	18163359	.	-	.	Parent=Os05t0376300-01
Chr05	irgsp1_rep	three_prime_UTR	18162083	18162435	.	-	.	Parent=Os05t0376300-01
Chr05	irgsp1_rep	three_prime_UTR	18161337	18161669	.	-	.	Parent=Os05t0376300-01
Chr05	irgsp1_rep	mRNA	18166718	18169005	.	-	.	ID=Os05t0376300-02;Name=Os05t0376300-02;Locus_id=Os05g0376300;Note=Non-protein coding transcript.;Transcript_evidence=AK065076 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013001K14;TENOR=Os05t0376300-02
Chr05	irgsp1_rep	exon	18166718	18169005	.	-	.	Parent=Os05t0376300-02
Chr05	irgsp1_rep	mRNA	18165479	18166974	.	-	.	ID=Os05t0376300-03;Name=Os05t0376300-03;Locus_id=Os05g0376300;Note=Hypothetical gene.;Transcript_evidence=AK110968 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-174-B08;Expression=AK110968;TENOR=Os05t0376300-03;KEGG=Os05t0376300-03
Chr05	irgsp1_rep	five_prime_UTR	18166299	18166974	.	-	.	Parent=Os05t0376300-03
Chr05	irgsp1_rep	CDS	18165852	18166298	.	-	0	Parent=Os05t0376300-03
Chr05	irgsp1_rep	three_prime_UTR	18165479	18165851	.	-	.	Parent=Os05t0376300-03
Chr05	irgsp1_rep	mRNA	18161343	18164977	.	-	.	ID=Os05t0376300-04;Name=Os05t0376300-04;Locus_id=Os05g0376300;Note=DNA-repair protein%2C UmuC-like domain containing protein.;Transcript_evidence=AK068730 (DDBJ%2C Best hit);ORF_evidence=B7F8Z9 (UniProt);InterPro=Acyl-CoA N-acyltransferase (IPR016181);NIAS_FLcDNA=J013159E18;Expression=AK068730;TENOR=Os05t0376300-04;KEGG=Os05t0376300-04 (EC:2.3.1.-)
Chr05	irgsp1_rep	five_prime_UTR	18163905	18164977	.	-	.	Parent=Os05t0376300-04
Chr05	irgsp1_rep	five_prime_UTR	18163600	18163643	.	-	.	Parent=Os05t0376300-04
Chr05	irgsp1_rep	CDS	18163520	18163599	.	-	0	Parent=Os05t0376300-04
Chr05	irgsp1_rep	CDS	18163023	18163266	.	-	1	Parent=Os05t0376300-04
Chr05	irgsp1_rep	CDS	18162834	18162926	.	-	0	Parent=Os05t0376300-04
Chr05	irgsp1_rep	CDS	18162521	18162595	.	-	0	Parent=Os05t0376300-04
Chr05	irgsp1_rep	CDS	18162083	18162435	.	-	0	Parent=Os05t0376300-04
Chr05	irgsp1_rep	CDS	18161534	18161669	.	-	1	Parent=Os05t0376300-04
Chr05	irgsp1_rep	three_prime_UTR	18161343	18161533	.	-	.	Parent=Os05t0376300-04
Chr05	irgsp1_rep	mRNA	18165796	18168364	.	+	.	ID=Os05t0376400-00;Name=Os05t0376400-00;Locus_id=Os05g0376400;Note=Similar to transporter.;Transcript_evidence=AK072725 (DDBJ%2C Secondary hit);ORF_evidence=NP_197886.2 (RefSeq);InterPro=Biopterin transport-related protein BT1 (IPR004324),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);TENOR=Os05t0376400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	18165796	18166262	.	+	.	Parent=Os05t0376400-00
Chr05	irgsp1_rep	five_prime_UTR	18166355	18166614	.	+	.	Parent=Os05t0376400-00
Chr05	irgsp1_rep	five_prime_UTR	18166726	18166821	.	+	.	Parent=Os05t0376400-00
Chr05	irgsp1_rep	five_prime_UTR	18166926	18166933	.	+	.	Parent=Os05t0376400-00
Chr05	irgsp1_rep	CDS	18166934	18167086	.	+	0	Parent=Os05t0376400-00
Chr05	irgsp1_rep	CDS	18167289	18168002	.	+	0	Parent=Os05t0376400-00
Chr05	irgsp1_rep	three_prime_UTR	18168003	18168364	.	+	.	Parent=Os05t0376400-00
Chr05	irgsp1_rep	mRNA	18170370	18182863	.	-	.	ID=Os05t0376600-01;Name=Os05t0376600-01;Locus_id=Os05g0376600;Note=BRCT domain containing protein.;Transcript_evidence=AK073218 (DDBJ%2C Best hit);ORF_evidence=F2EDM3 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Cellular Component: intracellular (GO:0005622),Molecular Function: N-acetyltransferase activity (GO:0008080);InterPro=GCN5-related N-acetyltransferase (GNAT) domain (IPR000182),BRCT (IPR001357),Acyl-CoA N-acyltransferase (IPR016181);NIAS_FLcDNA=J033014F21;Expression=AK073218;TENOR=Os05t0376600-01;KEGG=Os05t0376600-01
Chr05	irgsp1_rep	five_prime_UTR	18182736	18182863	.	-	.	Parent=Os05t0376600-01
Chr05	irgsp1_rep	CDS	18182657	18182735	.	-	0	Parent=Os05t0376600-01
Chr05	irgsp1_rep	CDS	18182434	18182544	.	-	2	Parent=Os05t0376600-01
Chr05	irgsp1_rep	CDS	18182311	18182337	.	-	2	Parent=Os05t0376600-01
Chr05	irgsp1_rep	CDS	18182145	18182212	.	-	2	Parent=Os05t0376600-01
Chr05	irgsp1_rep	CDS	18181694	18181791	.	-	0	Parent=Os05t0376600-01
Chr05	irgsp1_rep	CDS	18181472	18181517	.	-	1	Parent=Os05t0376600-01
Chr05	irgsp1_rep	CDS	18180573	18180665	.	-	0	Parent=Os05t0376600-01
Chr05	irgsp1_rep	CDS	18180145	18180256	.	-	0	Parent=Os05t0376600-01
Chr05	irgsp1_rep	CDS	18179381	18179575	.	-	2	Parent=Os05t0376600-01
Chr05	irgsp1_rep	CDS	18172550	18173013	.	-	2	Parent=Os05t0376600-01
Chr05	irgsp1_rep	CDS	18172233	18172342	.	-	0	Parent=Os05t0376600-01
Chr05	irgsp1_rep	CDS	18171887	18171945	.	-	1	Parent=Os05t0376600-01
Chr05	irgsp1_rep	CDS	18171422	18171609	.	-	2	Parent=Os05t0376600-01
Chr05	irgsp1_rep	CDS	18170626	18170814	.	-	0	Parent=Os05t0376600-01
Chr05	irgsp1_rep	three_prime_UTR	18170370	18170625	.	-	.	Parent=Os05t0376600-01
Chr05	irgsp1_rep	mRNA	18183823	18185191	.	-	.	ID=Os05t0376800-01;Name=Os05t0376800-01;Locus_id=Os05g0376800;Note=Gibberellin regulated protein family protein.;Transcript_evidence=AK106775 (DDBJ%2C Best hit);ORF_evidence=B6TR96 (UniProt);InterPro=Gibberellin regulated protein (IPR003854);NIAS_FLcDNA=002-115-G05;Expression=AK106775;TENOR=Os05t0376800-01;KEGG=Os05t0376800-01
Chr05	irgsp1_rep	five_prime_UTR	18184937	18185191	.	-	.	Parent=Os05t0376800-01
Chr05	irgsp1_rep	CDS	18184844	18184936	.	-	0	Parent=Os05t0376800-01
Chr05	irgsp1_rep	CDS	18184598	18184747	.	-	0	Parent=Os05t0376800-01
Chr05	irgsp1_rep	CDS	18184481	18184514	.	-	0	Parent=Os05t0376800-01
Chr05	irgsp1_rep	CDS	18184195	18184376	.	-	2	Parent=Os05t0376800-01
Chr05	irgsp1_rep	three_prime_UTR	18183823	18184194	.	-	.	Parent=Os05t0376800-01
Chr05	irgsp1_rep	mRNA	18190867	18193234	.	-	.	ID=Os05t0377000-01;Name=Os05t0377000-01;Locus_id=Os05g0377000;Note=Similar to Acyl carrier protein.;Transcript_evidence=AK289166 (DDBJ%2C Best hit);ORF_evidence=B8AXQ5 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Molecular Function: acyl carrier activity (GO:0000036),Molecular Function: phosphopantetheine binding (GO:0031177),Molecular Function: cofactor binding (GO:0048037);InterPro=Acyl carrier protein (ACP) (IPR003231),Phosphopantetheine attachment site (IPR006162),Phosphopantetheine-binding (IPR006163),Acyl carrier protein-like (IPR009081);NIAS_FLcDNA=J100009P08;TENOR=Os05t0377000-01;KEGG=Os05t0377000-01 (EC:1.6.5.3%2C EC:1.6.99.3)
Chr05	irgsp1_rep	five_prime_UTR	18193180	18193234	.	-	.	Parent=Os05t0377000-01
Chr05	irgsp1_rep	CDS	18192967	18193179	.	-	0	Parent=Os05t0377000-01
Chr05	irgsp1_rep	CDS	18191066	18191242	.	-	0	Parent=Os05t0377000-01
Chr05	irgsp1_rep	three_prime_UTR	18190867	18191065	.	-	.	Parent=Os05t0377000-01
Chr05	irgsp1_rep	mRNA	18198535	18198754	.	+	.	ID=Os05t0377150-00;Name=Os05t0377150-00;Locus_id=Os05g0377150;Note=Similar to Transposase.;Transcript_evidence=EU975848 (DDBJ);ORF_evidence=E5FNA3 (UniProt);TENOR=Os05t0377150-00
Chr05	irgsp1_rep	five_prime_UTR	18198535	18198535	.	+	.	Parent=Os05t0377150-00
Chr05	irgsp1_rep	CDS	18198536	18198754	.	+	0	Parent=Os05t0377150-00
Chr05	irgsp1_rep	mRNA	18209181	18209854	.	-	.	ID=Os05t0377450-00;Name=Os05t0377450-00;Locus_id=Os05g0377450;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);InterPro=Ribonuclease H1%2C N-terminal (IPR011320);TENOR=Os05t0377450-00
Chr05	irgsp1_rep	five_prime_UTR	18209851	18209854	.	-	.	Parent=Os05t0377450-00
Chr05	irgsp1_rep	CDS	18209290	18209850	.	-	0	Parent=Os05t0377450-00
Chr05	irgsp1_rep	three_prime_UTR	18209181	18209289	.	-	.	Parent=Os05t0377450-00
Chr05	irgsp1_rep	mRNA	18216483	18216544	.	-	.	ID=Os05t0377600-00;Name=Os05t0377600-00;Locus_id=Os05g0377600;Note=Non-protein coding transcript.;Transcript_evidence=EU941912 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0377600-00
Chr05	irgsp1_rep	exon	18216483	18216544	.	-	.	Parent=Os05t0377600-00
Chr05	irgsp1_rep	mRNA	18223361	18223422	.	+	.	ID=Os05t0377750-00;Name=Os05t0377750-00;Locus_id=Os05g0377750;Note=Non-protein coding transcript.;Transcript_evidence=EU941912 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0377750-00
Chr05	irgsp1_rep	exon	18223361	18223422	.	+	.	Parent=Os05t0377750-00
Chr05	irgsp1_rep	mRNA	18234846	18236501	.	+	.	ID=Os05t0378200-00;Name=Os05t0378200-00;Locus_id=Os05g0378200;CGSNL Gene Symbol=GRAS26;CGSNL Gene Name=GRAS PROTEIN 26;Oryzabase Gene Symbol Synonym(s)=OsGRAS-26%2C OsGRAS26%2C GRAS-26%2C DLN137%2C OsDLN137;Oryzabase Gene Name Synonym(s)=GRAS protein 26%2C DLN repressor 137%2C DLN motif protein 137;Note=Transcription factor GRAS domain containing protein.;Transcript_evidence=EU956570 (DDBJ);ORF_evidence=Q6AUP1 (UniProt);InterPro=Transcription factor GRAS (IPR005202);Oryzabase=22792;TENOR=Os05t0378200-00
Chr05	irgsp1_rep	CDS	18234846	18236501	.	+	0	Parent=Os05t0378200-00
Chr05	irgsp1_rep	mRNA	18275763	18277445	.	+	.	ID=Os05t0378500-00;Name=Os05t0378500-00;Locus_id=Os05g0378500;CGSNL Gene Symbol=GRAS27;CGSNL Gene Name=GRAS PROTEIN 27;Oryzabase Gene Symbol Synonym(s)=OsGRAS-27%2C OsGRAS27%2C GRAS-27;Oryzabase Gene Name Synonym(s)=GRAS protein 27;Note=Transcription factor GRAS domain containing protein.;Transcript_evidence=BT070027 (DDBJ);ORF_evidence=Q688G4 (UniProt);InterPro=Transcription factor GRAS (IPR005202);Oryzabase=22793;TENOR=Os05t0378500-00
Chr05	irgsp1_rep	CDS	18275763	18277445	.	+	0	Parent=Os05t0378500-00
Chr05	irgsp1_rep	mRNA	18315847	18318438	.	-	.	ID=Os05t0378800-01;Name=Os05t0378800-01;Locus_id=Os05g0378800;Note=Similar to ankyrin like protein.;Transcript_evidence=AK102118 (DDBJ%2C Best hit);ORF_evidence=NP_001151799.1 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Protein of unknown function DUF248%2C methyltransferase putative (IPR004159);NIAS_FLcDNA=J033084M04;TENOR=Os05t0378800-01
Chr05	irgsp1_rep	five_prime_UTR	18318389	18318438	.	-	.	Parent=Os05t0378800-01
Chr05	irgsp1_rep	CDS	18318196	18318388	.	-	0	Parent=Os05t0378800-01
Chr05	irgsp1_rep	CDS	18317137	18317548	.	-	2	Parent=Os05t0378800-01
Chr05	irgsp1_rep	CDS	18316504	18316793	.	-	1	Parent=Os05t0378800-01
Chr05	irgsp1_rep	CDS	18315847	18316221	.	-	2	Parent=Os05t0378800-01
Chr05	irgsp1_rep	mRNA	18313449	18318436	.	-	.	ID=Os05t0378800-02;Name=Os05t0378800-02;Locus_id=Os05g0378800;Note=Protein of unknown function DUF248%2C methyltransferase putative family protein.;Transcript_evidence=AK069380 (DDBJ%2C Best hit);ORF_evidence=NP_001151799.1 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Protein of unknown function DUF248%2C methyltransferase putative (IPR004159);NIAS_FLcDNA=J023013C01;Expression=AK069380;TENOR=Os05t0378800-02;KEGG=Os05t0378800-02
Chr05	irgsp1_rep	five_prime_UTR	18318389	18318436	.	-	.	Parent=Os05t0378800-02
Chr05	irgsp1_rep	CDS	18318196	18318388	.	-	0	Parent=Os05t0378800-02
Chr05	irgsp1_rep	CDS	18317137	18317548	.	-	2	Parent=Os05t0378800-02
Chr05	irgsp1_rep	CDS	18316504	18316793	.	-	1	Parent=Os05t0378800-02
Chr05	irgsp1_rep	CDS	18315838	18316221	.	-	2	Parent=Os05t0378800-02
Chr05	irgsp1_rep	CDS	18314981	18315227	.	-	2	Parent=Os05t0378800-02
Chr05	irgsp1_rep	CDS	18314768	18314906	.	-	1	Parent=Os05t0378800-02
Chr05	irgsp1_rep	CDS	18313982	18314140	.	-	0	Parent=Os05t0378800-02
Chr05	irgsp1_rep	three_prime_UTR	18313981	18313981	.	-	.	Parent=Os05t0378800-02
Chr05	irgsp1_rep	three_prime_UTR	18313449	18313893	.	-	.	Parent=Os05t0378800-02
Chr05	irgsp1_rep	mRNA	18313487	18316098	.	-	.	ID=Os05t0378800-03;Name=Os05t0378800-03;Locus_id=Os05g0378800;Note=Similar to ankyrin like protein.;Transcript_evidence=AK058210 (DDBJ%2C Best hit);ORF_evidence=NP_001151799.1 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Protein of unknown function DUF248%2C methyltransferase putative (IPR004159);NIAS_FLcDNA=001-010-C05;Expression=AK058210;TENOR=Os05t0378800-03;KEGG=Os05t0378800-03
Chr05	irgsp1_rep	five_prime_UTR	18316097	18316098	.	-	.	Parent=Os05t0378800-03
Chr05	irgsp1_rep	CDS	18315838	18316096	.	-	0	Parent=Os05t0378800-03
Chr05	irgsp1_rep	CDS	18314981	18315227	.	-	2	Parent=Os05t0378800-03
Chr05	irgsp1_rep	CDS	18314768	18314906	.	-	1	Parent=Os05t0378800-03
Chr05	irgsp1_rep	CDS	18313982	18314140	.	-	0	Parent=Os05t0378800-03
Chr05	irgsp1_rep	three_prime_UTR	18313981	18313981	.	-	.	Parent=Os05t0378800-03
Chr05	irgsp1_rep	three_prime_UTR	18313487	18313893	.	-	.	Parent=Os05t0378800-03
Chr05	irgsp1_rep	mRNA	18319332	18323976	.	-	.	ID=Os05t0378900-01;Name=Os05t0378900-01;Locus_id=Os05g0378900;Note=Similar to Golgi transport complex protein-related.;Transcript_evidence=AK103841 (DDBJ%2C Best hit);ORF_evidence=NP_176960.1 (RefSeq);InterPro=Conserved oligomeric Golgi complex%2C subunit 5 (IPR019465);NIAS_FLcDNA=J033148I18;Expression=AK103841;TENOR=Os05t0378900-01;KEGG=Os05t0378900-01
Chr05	irgsp1_rep	five_prime_UTR	18323889	18323976	.	-	.	Parent=Os05t0378900-01
Chr05	irgsp1_rep	CDS	18322815	18323888	.	-	0	Parent=Os05t0378900-01
Chr05	irgsp1_rep	CDS	18321568	18322038	.	-	0	Parent=Os05t0378900-01
Chr05	irgsp1_rep	CDS	18319545	18320459	.	-	0	Parent=Os05t0378900-01
Chr05	irgsp1_rep	three_prime_UTR	18319332	18319544	.	-	.	Parent=Os05t0378900-01
Chr05	irgsp1_rep	mRNA	18319191	18321759	.	-	.	ID=Os05t0378900-02;Name=Os05t0378900-02;Locus_id=Os05g0378900;Note=Similar to predicted protein.;Transcript_evidence=AK058213 (DDBJ%2C Best hit);ORF_evidence=NP_176960.1 (RefSeq);NIAS_FLcDNA=001-010-D01;Expression=AK058213;TENOR=Os05t0378900-02;KEGG=Os05t0378900-02
Chr05	irgsp1_rep	CDS	18321568	18321759	.	-	0	Parent=Os05t0378900-02
Chr05	irgsp1_rep	CDS	18319545	18320459	.	-	0	Parent=Os05t0378900-02
Chr05	irgsp1_rep	three_prime_UTR	18319191	18319544	.	-	.	Parent=Os05t0378900-02
Chr05	irgsp1_rep	mRNA	18319191	18319432	.	-	.	ID=Os05t0378900-03;Name=Os05t0378900-03;Locus_id=Os05g0378900;Note=Non-protein coding transcript.;Transcript_evidence=AK058699 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-019-C02;TENOR=Os05t0378900-03
Chr05	irgsp1_rep	exon	18319191	18319432	.	-	.	Parent=Os05t0378900-03
Chr05	irgsp1_rep	mRNA	18340025	18341151	.	-	.	ID=Os05t0379300-01;Name=Os05t0379300-01;Locus_id=Os05g0379300;Note=Conserved hypothetical protein.;Transcript_evidence=AK109293 (DDBJ%2C Best hit);ORF_evidence=NP_001067724.1 (RefSeq);NIAS_FLcDNA=002-188-D02;TENOR=Os05t0379300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	18340530	18341151	.	-	.	Parent=Os05t0379300-01
Chr05	irgsp1_rep	CDS	18340215	18340529	.	-	0	Parent=Os05t0379300-01
Chr05	irgsp1_rep	three_prime_UTR	18340025	18340214	.	-	.	Parent=Os05t0379300-01
Chr05	irgsp1_rep	mRNA	18341384	18347080	.	+	.	ID=Os05t0379500-01;Name=Os05t0379500-01;Locus_id=Os05g0379500;Note=Conserved hypothetical protein.;Transcript_evidence=AK121450 (DDBJ%2C Best hit);ORF_evidence=B9FPB2 (UniProt);NIAS_FLcDNA=J023142G12;TENOR=Os05t0379500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	18341384	18341385	.	+	.	Parent=Os05t0379500-01
Chr05	irgsp1_rep	CDS	18341386	18341601	.	+	0	Parent=Os05t0379500-01
Chr05	irgsp1_rep	three_prime_UTR	18341602	18346640	.	+	.	Parent=Os05t0379500-01
Chr05	irgsp1_rep	three_prime_UTR	18346845	18347080	.	+	.	Parent=Os05t0379500-01
Chr05	irgsp1_rep	mRNA	18370291	18371184	.	-	.	ID=Os05t0380200-01;Name=Os05t0380200-01;Locus_id=Os05g0380200;Note=Conserved hypothetical protein.;Transcript_evidence=AK120941 (DDBJ%2C Best hit);ORF_evidence=Q8LMM3 (UniProt);NIAS_FLcDNA=J023037I04;TENOR=Os05t0380200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	18370966	18371184	.	-	.	Parent=Os05t0380200-01
Chr05	irgsp1_rep	five_prime_UTR	18370660	18370860	.	-	.	Parent=Os05t0380200-01
Chr05	irgsp1_rep	CDS	18370414	18370659	.	-	0	Parent=Os05t0380200-01
Chr05	irgsp1_rep	three_prime_UTR	18370291	18370413	.	-	.	Parent=Os05t0380200-01
Chr05	irgsp1_rep	mRNA	18370501	18370866	.	+	.	ID=Os05t0380250-00;Name=Os05t0380250-00;Locus_id=Os05g0380250;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os05t0380250-00;KEGG=Os05t0380250-00
Chr05	irgsp1_rep	CDS	18370501	18370866	.	+	0	Parent=Os05t0380250-00
Chr05	irgsp1_rep	mRNA	18377097	18382814	.	+	.	ID=Os05t0380300-01;Name=Os05t0380300-01;Locus_id=Os05g0380300;Note=Similar to NBS-LRR protein (Fragment).;Transcript_evidence=AK120094 (DDBJ%2C Best hit);ORF_evidence=B9FPB2 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013021N17;Expression=AK120094;TENOR=Os05t0380300-01;KEGG=Os05t0380300-01
Chr05	irgsp1_rep	five_prime_UTR	18377097	18377213	.	+	.	Parent=Os05t0380300-01
Chr05	irgsp1_rep	CDS	18377214	18380993	.	+	0	Parent=Os05t0380300-01
Chr05	irgsp1_rep	three_prime_UTR	18380994	18381007	.	+	.	Parent=Os05t0380300-01
Chr05	irgsp1_rep	three_prime_UTR	18381883	18382198	.	+	.	Parent=Os05t0380300-01
Chr05	irgsp1_rep	three_prime_UTR	18382349	18382814	.	+	.	Parent=Os05t0380300-01
Chr05	irgsp1_rep	mRNA	18383597	18384948	.	+	.	ID=Os05t0380400-01;Name=Os05t0380400-01;Locus_id=Os05g0380400;Note=Conserved hypothetical protein.;Transcript_evidence=AK109574 (DDBJ%2C Best hit);ORF_evidence=B9FPB3 (UniProt);NIAS_FLcDNA=002-132-H01;TENOR=Os05t0380400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	18383597	18383840	.	+	.	Parent=Os05t0380400-01
Chr05	irgsp1_rep	CDS	18383841	18383842	.	+	0	Parent=Os05t0380400-01
Chr05	irgsp1_rep	CDS	18384627	18384729	.	+	1	Parent=Os05t0380400-01
Chr05	irgsp1_rep	three_prime_UTR	18384730	18384948	.	+	.	Parent=Os05t0380400-01
Chr05	irgsp1_rep	mRNA	18391880	18396043	.	+	.	ID=Os05t0380700-01;Name=Os05t0380700-01;Locus_id=Os05g0380700;Note=Conserved hypothetical protein.;Transcript_evidence=AK106900 (DDBJ%2C Best hit);ORF_evidence=Q2RBA0 (UniProt);NIAS_FLcDNA=002-118-H07;TENOR=Os05t0380700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	18391880	18392519	.	+	.	Parent=Os05t0380700-01
Chr05	irgsp1_rep	CDS	18392520	18393041	.	+	0	Parent=Os05t0380700-01
Chr05	irgsp1_rep	three_prime_UTR	18393042	18396043	.	+	.	Parent=Os05t0380700-01
Chr05	irgsp1_rep	mRNA	18398669	18401033	.	-	.	ID=Os05t0380850-00;Name=Os05t0380850-00;Locus_id=Os05g0380850;Note=Hypothetical protein.;Transcript_evidence=BT085076 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0380850-00
Chr05	irgsp1_rep	five_prime_UTR	18400691	18401033	.	-	.	Parent=Os05t0380850-00
Chr05	irgsp1_rep	CDS	18400663	18400690	.	-	0	Parent=Os05t0380850-00
Chr05	irgsp1_rep	CDS	18399945	18400375	.	-	2	Parent=Os05t0380850-00
Chr05	irgsp1_rep	three_prime_UTR	18399814	18399944	.	-	.	Parent=Os05t0380850-00
Chr05	irgsp1_rep	three_prime_UTR	18398669	18399658	.	-	.	Parent=Os05t0380850-00
Chr05	irgsp1_rep	mRNA	18406499	18407456	.	-	.	ID=Os05t0380900-01;Name=Os05t0380900-01;Locus_id=Os05g0380900;CGSNL Gene Symbol=CML15;CGSNL Gene Name=CALMODULIN-LIKE PROTEIN 15;Oryzabase Gene Symbol Synonym(s)=OsCML15;Oryzabase Gene Name Synonym(s)=calmodulin-like protein 15;Note=Similar to Polcalcin Jun o 2 (Calcium-binding pollen allergen Jun o 2).;Transcript_evidence=AK099962 (DDBJ%2C Best hit),AK067214 (DDBJ%2C Best hit);ORF_evidence=B6UHY6 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J013126K19,J013097O18;Oryzabase=10501;Expression=AK099962;TENOR=Os05t0380900-01;KEGG=Os05t0380900-01
Chr05	irgsp1_rep	five_prime_UTR	18407358	18407456	.	-	.	Parent=Os05t0380900-01
Chr05	irgsp1_rep	CDS	18406752	18407357	.	-	0	Parent=Os05t0380900-01
Chr05	irgsp1_rep	three_prime_UTR	18406499	18406751	.	-	.	Parent=Os05t0380900-01
Chr05	irgsp1_rep	mRNA	18429433	18430290	.	-	.	ID=Os05t0381400-01;Name=Os05t0381400-01;Locus_id=Os05g0381400;RAP-DB Gene Symbol Synonym(s)=AWPM-19%2C PM19%2C OsPM1%2C OsPM19L1;RAP-DB Gene Name Synonym(s)=plasma membrane protein 1%2C AWPM-19-like protein 1;Oryzabase Gene Symbol Synonym(s)=AWPM-19%2C PM19%2C OsPM1%2C OsPM19L1%2C PM1%2C PM19L1%2C OsAWPM-19%2C OsPM19;Oryzabase Gene Name Synonym(s)=plasma membrane protein 1%2C AWPM-19-like protein 1;Note=AWPM-19-like protein%2C Stress tolerance through ABA-dependent patheway;Transcript_evidence=AK102039;ORF_evidence=Q6L4D2;InterPro=AWPM-19-like (IPR008390);NIAS_FLcDNA=J033081F22;Manual Curation=February 19%2C 2016;Literature_PMID=26505346;Oryzabase=15516;Expression=AK102039;TENOR=Os05t0381400-01;KEGG=Os05t0381400-01
Chr05	irgsp1_rep	five_prime_UTR	18430205	18430290	.	-	.	Parent=Os05t0381400-01
Chr05	irgsp1_rep	CDS	18429683	18430204	.	-	0	Parent=Os05t0381400-01
Chr05	irgsp1_rep	three_prime_UTR	18429433	18429682	.	-	.	Parent=Os05t0381400-01
Chr05	irgsp1_rep	mRNA	18433303	18437513	.	+	.	ID=Os05t0381500-01;Name=Os05t0381500-01;Locus_id=Os05g0381500;Note=Similar to predicted protein.;Transcript_evidence=AK064935 (DDBJ%2C Best hit);ORF_evidence=XP_002879764.1 (RefSeq);NIAS_FLcDNA=J013000O24;TENOR=Os05t0381500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	18433303	18433758	.	+	.	Parent=Os05t0381500-01
Chr05	irgsp1_rep	five_prime_UTR	18434476	18435726	.	+	.	Parent=Os05t0381500-01
Chr05	irgsp1_rep	CDS	18435727	18435879	.	+	0	Parent=Os05t0381500-01
Chr05	irgsp1_rep	CDS	18436203	18436295	.	+	0	Parent=Os05t0381500-01
Chr05	irgsp1_rep	CDS	18436508	18436566	.	+	0	Parent=Os05t0381500-01
Chr05	irgsp1_rep	CDS	18436955	18437048	.	+	1	Parent=Os05t0381500-01
Chr05	irgsp1_rep	CDS	18437194	18437406	.	+	0	Parent=Os05t0381500-01
Chr05	irgsp1_rep	three_prime_UTR	18437407	18437513	.	+	.	Parent=Os05t0381500-01
Chr05	irgsp1_rep	mRNA	18435460	18437435	.	+	.	ID=Os05t0381500-02;Name=Os05t0381500-02;Locus_id=Os05g0381500;Note=Similar to predicted protein.;Transcript_evidence=AK061992 (DDBJ%2C Best hit);ORF_evidence=XP_002879764.1 (RefSeq);NIAS_FLcDNA=001-043-C02;Expression=AK061992;TENOR=Os05t0381500-02;KEGG=Os05t0381500-02
Chr05	irgsp1_rep	five_prime_UTR	18435460	18435726	.	+	.	Parent=Os05t0381500-02
Chr05	irgsp1_rep	CDS	18435727	18435879	.	+	0	Parent=Os05t0381500-02
Chr05	irgsp1_rep	CDS	18436203	18436295	.	+	0	Parent=Os05t0381500-02
Chr05	irgsp1_rep	CDS	18436508	18436566	.	+	0	Parent=Os05t0381500-02
Chr05	irgsp1_rep	CDS	18436955	18437048	.	+	1	Parent=Os05t0381500-02
Chr05	irgsp1_rep	CDS	18437194	18437406	.	+	0	Parent=Os05t0381500-02
Chr05	irgsp1_rep	three_prime_UTR	18437407	18437435	.	+	.	Parent=Os05t0381500-02
Chr05	irgsp1_rep	mRNA	18448465	18448934	.	+	.	ID=Os05t0381600-01;Name=Os05t0381600-01;Locus_id=Os05g0381600;Note=Hypothetical conserved gene.;Transcript_evidence=AK107921 (DDBJ%2C Best hit);ORF_evidence=A2Y441 (UniProt);NIAS_FLcDNA=002-134-H04;TENOR=Os05t0381600-01
Chr05	irgsp1_rep	five_prime_UTR	18448465	18448465	.	+	.	Parent=Os05t0381600-01
Chr05	irgsp1_rep	CDS	18448466	18448934	.	+	0	Parent=Os05t0381600-01
Chr05	irgsp1_rep	mRNA	18449019	18451915	.	+	.	ID=Os05t0381700-01;Name=Os05t0381700-01;Locus_id=Os05g0381700;Note=Calmodulin-binding protein%2C plant domain containing protein.;Transcript_evidence=AK068838 (DDBJ%2C Best hit);ORF_evidence=A2Y441 (UniProt);InterPro=Calmodulin-binding protein%2C plant (IPR012417);NIAS_FLcDNA=J013160I23;TENOR=Os05t0381700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	18449019	18449020	.	+	.	Parent=Os05t0381700-01
Chr05	irgsp1_rep	CDS	18449021	18451417	.	+	0	Parent=Os05t0381700-01
Chr05	irgsp1_rep	three_prime_UTR	18451418	18451428	.	+	.	Parent=Os05t0381700-01
Chr05	irgsp1_rep	three_prime_UTR	18451517	18451915	.	+	.	Parent=Os05t0381700-01
Chr05	irgsp1_rep	mRNA	18451015	18451915	.	+	.	ID=Os05t0381700-02;Name=Os05t0381700-02;Locus_id=Os05g0381700;Note=Similar to calmodulin-binding protein-related.;Transcript_evidence=AK058835 (DDBJ%2C Best hit);ORF_evidence=NP_181414.1 (RefSeq);InterPro=Calmodulin-binding protein%2C plant (IPR012417);NIAS_FLcDNA=001-004-B11;Expression=AK058835;TENOR=Os05t0381700-02;KEGG=Os05t0381700-02
Chr05	irgsp1_rep	five_prime_UTR	18451015	18451033	.	+	.	Parent=Os05t0381700-02
Chr05	irgsp1_rep	CDS	18451034	18451417	.	+	0	Parent=Os05t0381700-02
Chr05	irgsp1_rep	three_prime_UTR	18451418	18451428	.	+	.	Parent=Os05t0381700-02
Chr05	irgsp1_rep	three_prime_UTR	18451517	18451915	.	+	.	Parent=Os05t0381700-02
Chr05	irgsp1_rep	mRNA	18463381	18464775	.	+	.	ID=Os05t0381900-01;Name=Os05t0381900-01;Locus_id=Os05g0381900;Note=Conserved hypothetical protein.;Transcript_evidence=AK105553 (DDBJ%2C Best hit);ORF_evidence=B8AXR8 (UniProt);NIAS_FLcDNA=001-128-B01;TENOR=Os05t0381900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	18463381	18463428	.	+	.	Parent=Os05t0381900-01
Chr05	irgsp1_rep	CDS	18463429	18463755	.	+	0	Parent=Os05t0381900-01
Chr05	irgsp1_rep	three_prime_UTR	18463756	18464775	.	+	.	Parent=Os05t0381900-01
Chr05	irgsp1_rep	mRNA	18466963	18470494	.	+	.	ID=Os05t0382000-01;Name=Os05t0382000-01;Locus_id=Os05g0382000;Oryzabase Gene Symbol Synonym(s)=OsSTA148;Note=Similar to ABL164Cp.;Transcript_evidence=AK072704 (DDBJ%2C Best hit),AK121203 (DDBJ%2C Best hit);ORF_evidence=E5GCJ9 (UniProt);GO=Biological Process: regulation of ARF GTPase activity (GO:0032312),Molecular Function: protein binding (GO:0005515),Molecular Function: ARF GTPase activator activity (GO:0008060),Molecular Function: zinc ion binding (GO:0008270);InterPro=C2 calcium-dependent membrane targeting (IPR000008),Arf GTPase activating protein (IPR001164),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=J023140B02,J023087N07;Oryzabase=19436;Expression=AK072704;TENOR=Os05t0382000-01;KEGG=Os05t0382000-01
Chr05	irgsp1_rep	five_prime_UTR	18466963	18467214	.	+	.	Parent=Os05t0382000-01
Chr05	irgsp1_rep	CDS	18467215	18467315	.	+	0	Parent=Os05t0382000-01
Chr05	irgsp1_rep	CDS	18467435	18467490	.	+	1	Parent=Os05t0382000-01
Chr05	irgsp1_rep	CDS	18468039	18468138	.	+	2	Parent=Os05t0382000-01
Chr05	irgsp1_rep	CDS	18468248	18468323	.	+	1	Parent=Os05t0382000-01
Chr05	irgsp1_rep	CDS	18468628	18468791	.	+	0	Parent=Os05t0382000-01
Chr05	irgsp1_rep	CDS	18468932	18469118	.	+	1	Parent=Os05t0382000-01
Chr05	irgsp1_rep	CDS	18469211	18469333	.	+	0	Parent=Os05t0382000-01
Chr05	irgsp1_rep	CDS	18469420	18469515	.	+	0	Parent=Os05t0382000-01
Chr05	irgsp1_rep	CDS	18470081	18470365	.	+	0	Parent=Os05t0382000-01
Chr05	irgsp1_rep	three_prime_UTR	18470366	18470494	.	+	.	Parent=Os05t0382000-01
Chr05	irgsp1_rep	mRNA	18475523	18479481	.	-	.	ID=Os05t0382200-00;Name=Os05t0382200-00;Locus_id=Os05g0382200;CGSNL Gene Symbol=CHX11;CGSNL Gene Name=CATION/H+ EXCHANGER  11;Oryzabase Gene Symbol Synonym(s)=NaT%2C OsCHX11;Oryzabase Gene Name Synonym(s)=Sodium transporter%2C cation/H+ exchanger  11;Note=Similar to Cation/H+ exchanger (Fragment).;Transcript_evidence=AK375782 (DDBJ);ORF_evidence=Q2HVU7 (UniProt);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: solute:hydrogen antiporter activity (GO:0015299);InterPro=Cation/H+ exchanger (IPR006153);Oryzabase=19546;TENOR=Os05t0382200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	18479481	18479481	.	-	.	Parent=Os05t0382200-00
Chr05	irgsp1_rep	CDS	18479301	18479480	.	-	0	Parent=Os05t0382200-00
Chr05	irgsp1_rep	CDS	18475781	18476800	.	-	0	Parent=Os05t0382200-00
Chr05	irgsp1_rep	CDS	18475523	18475684	.	-	0	Parent=Os05t0382200-00
Chr05	irgsp1_rep	mRNA	18487284	18488994	.	-	.	ID=Os05t0382400-01;Name=Os05t0382400-01;Locus_id=Os05g0382400;Note=Hypothetical protein.;Transcript_evidence=AK107158 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-124-E10;Expression=AK107158;TENOR=Os05t0382400-01;KEGG=Os05t0382400-01
Chr05	irgsp1_rep	five_prime_UTR	18488141	18488994	.	-	.	Parent=Os05t0382400-01
Chr05	irgsp1_rep	CDS	18487775	18488140	.	-	0	Parent=Os05t0382400-01
Chr05	irgsp1_rep	three_prime_UTR	18487284	18487774	.	-	.	Parent=Os05t0382400-01
Chr05	irgsp1_rep	mRNA	18487329	18489221	.	+	.	ID=Os05t0382500-01;Name=Os05t0382500-01;Locus_id=Os05g0382500;CGSNL Gene Symbol=CYP94E3;CGSNL Gene Name=CYTOCHROME P450 94E3;Oryzabase Gene Symbol Synonym(s)=OsCYP94E3;Oryzabase Gene Name Synonym(s)=CytoChrome P450 94E3;Note=Similar to CytoChrome P450 CYP94E4.;Transcript_evidence=AK107084 (DDBJ%2C Best hit);ORF_evidence=B4F9Q6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=002-121-G02;Oryzabase=23114;TENOR=Os05t0382500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	18487329	18487358	.	+	.	Parent=Os05t0382500-01
Chr05	irgsp1_rep	CDS	18487359	18488939	.	+	0	Parent=Os05t0382500-01
Chr05	irgsp1_rep	three_prime_UTR	18488940	18489221	.	+	.	Parent=Os05t0382500-01
Chr05	irgsp1_rep	mRNA	18489798	18490672	.	-	.	ID=Os05t0382550-01;Name=Os05t0382550-01;Locus_id=Os05g0382550;Note=Conserved hypothetical protein.;Transcript_evidence=AK241471 (DDBJ%2C Best hit);ORF_evidence=NP_001174400.1 (RefSeq);NIAS_FLcDNA=J065165E22;TENOR=Os05t0382550-01;KEGG=Os05t0382550-01
Chr05	irgsp1_rep	CDS	18490265	18490672	.	-	0	Parent=Os05t0382550-01
Chr05	irgsp1_rep	three_prime_UTR	18489798	18490264	.	-	.	Parent=Os05t0382550-01
Chr05	irgsp1_rep	mRNA	18494334	18496011	.	-	.	ID=Os05t0382600-02;Name=Os05t0382600-02;Locus_id=Os05g0382600;CGSNL Gene Symbol=ANN3;CGSNL Gene Name=ANNEXIN 3;Oryzabase Gene Symbol Synonym(s)=OsANN3;Oryzabase Gene Name Synonym(s)=Annexin 3;Note=Similar to Annexin-like protein RJ4.;Transcript_evidence=AK060054 (DDBJ%2C Best hit),AK098879 (DDBJ%2C Best hit),AK104639 (DDBJ%2C Best hit);ORF_evidence=B6U6E7 (UniProt);NIAS_FLcDNA=006-305-B07,J013001F11,006-310-E05;Oryzabase=15466;Expression=AK060054;TENOR=Os05t0382600-02;KEGG=Os05t0382600-02
Chr05	irgsp1_rep	five_prime_UTR	18495905	18496011	.	-	.	Parent=Os05t0382600-02
Chr05	irgsp1_rep	CDS	18495865	18495904	.	-	0	Parent=Os05t0382600-02
Chr05	irgsp1_rep	CDS	18495553	18495740	.	-	2	Parent=Os05t0382600-02
Chr05	irgsp1_rep	CDS	18495230	18495448	.	-	0	Parent=Os05t0382600-02
Chr05	irgsp1_rep	CDS	18494901	18495131	.	-	0	Parent=Os05t0382600-02
Chr05	irgsp1_rep	CDS	18494551	18494832	.	-	0	Parent=Os05t0382600-02
Chr05	irgsp1_rep	three_prime_UTR	18494334	18494550	.	-	.	Parent=Os05t0382600-02
Chr05	irgsp1_rep	mRNA	18494366	18495129	.	-	.	ID=Os05t0382600-03;Name=Os05t0382600-03;Locus_id=Os05g0382600;CGSNL Gene Symbol=ANN3;CGSNL Gene Name=ANNEXIN 3;Oryzabase Gene Symbol Synonym(s)=OsANN3;Oryzabase Gene Name Synonym(s)=Annexin 3;Note=Annexin family protein.;Transcript_evidence=AK068231 (DDBJ%2C Best hit);ORF_evidence=B7E4J4 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509),Molecular Function: calcium-dependent phospholipid binding (GO:0005544);InterPro=Annexin (IPR001464),Annexin%2C plant (IPR009118),Annexin repeat (IPR018502);NIAS_FLcDNA=J013147O19;Oryzabase=15466;Expression=AK068231;TENOR=Os05t0382600-03;KEGG=Os05t0382600-03
Chr05	irgsp1_rep	five_prime_UTR	18495129	18495129	.	-	.	Parent=Os05t0382600-03
Chr05	irgsp1_rep	CDS	18494901	18495128	.	-	0	Parent=Os05t0382600-03
Chr05	irgsp1_rep	CDS	18494762	18494832	.	-	0	Parent=Os05t0382600-03
Chr05	irgsp1_rep	CDS	18494384	18494534	.	-	1	Parent=Os05t0382600-03
Chr05	irgsp1_rep	three_prime_UTR	18494366	18494383	.	-	.	Parent=Os05t0382600-03
Chr05	irgsp1_rep	mRNA	18500678	18502996	.	+	.	ID=Os05t0382900-01;Name=Os05t0382900-01;Locus_id=Os05g0382900;CGSNL Gene Symbol=ANN4;CGSNL Gene Name=ANNEXIN 4;Oryzabase Gene Symbol Synonym(s)=OsANN4;Oryzabase Gene Name Synonym(s)=Annexin 4;Note=Annexin family protein.;Transcript_evidence=AK061728 (DDBJ%2C Best hit);ORF_evidence=NP_001147750.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509),Molecular Function: calcium-dependent phospholipid binding (GO:0005544);InterPro=Annexin (IPR001464),Annexin%2C plant (IPR009118),Annexin repeat%2C conserved site (IPR018252),Annexin repeat (IPR018502);NIAS_FLcDNA=001-038-B11;Oryzabase=15467;Expression=AK061728;TENOR=Os05t0382900-01;KEGG=Os05t0382900-01
Chr05	irgsp1_rep	five_prime_UTR	18500678	18500808	.	+	.	Parent=Os05t0382900-01
Chr05	irgsp1_rep	CDS	18500809	18501031	.	+	0	Parent=Os05t0382900-01
Chr05	irgsp1_rep	CDS	18501371	18501516	.	+	2	Parent=Os05t0382900-01
Chr05	irgsp1_rep	CDS	18501618	18502163	.	+	0	Parent=Os05t0382900-01
Chr05	irgsp1_rep	CDS	18502650	18502853	.	+	0	Parent=Os05t0382900-01
Chr05	irgsp1_rep	three_prime_UTR	18502854	18502996	.	+	.	Parent=Os05t0382900-01
Chr05	irgsp1_rep	mRNA	18500877	18503010	.	+	.	ID=Os05t0382900-02;Name=Os05t0382900-02;Locus_id=Os05g0382900;CGSNL Gene Symbol=ANN4;CGSNL Gene Name=ANNEXIN 4;Oryzabase Gene Symbol Synonym(s)=OsANN4;Oryzabase Gene Name Synonym(s)=Annexin 4;Note=Similar to annexin-like protein RJ4.;Transcript_evidence=AK065038 (DDBJ%2C Best hit);ORF_evidence=NP_001147750.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509),Molecular Function: calcium-dependent phospholipid binding (GO:0005544);InterPro=Annexin (IPR001464),Annexin%2C plant (IPR009118),Annexin repeat%2C conserved site (IPR018252),Annexin repeat (IPR018502);NIAS_FLcDNA=J013001H15;Oryzabase=15467;Expression=AK065038;TENOR=Os05t0382900-02;KEGG=Os05t0382900-02
Chr05	irgsp1_rep	five_prime_UTR	18500877	18500955	.	+	.	Parent=Os05t0382900-02
Chr05	irgsp1_rep	CDS	18500956	18501031	.	+	0	Parent=Os05t0382900-02
Chr05	irgsp1_rep	CDS	18501371	18501516	.	+	2	Parent=Os05t0382900-02
Chr05	irgsp1_rep	CDS	18501618	18502163	.	+	0	Parent=Os05t0382900-02
Chr05	irgsp1_rep	CDS	18502650	18502853	.	+	0	Parent=Os05t0382900-02
Chr05	irgsp1_rep	three_prime_UTR	18502854	18503010	.	+	.	Parent=Os05t0382900-02
Chr05	irgsp1_rep	mRNA	18503044	18505884	.	-	.	ID=Os05t0383000-01;Name=Os05t0383000-01;Locus_id=Os05g0383000;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK058345 (DDBJ%2C Best hit);ORF_evidence=B6T224 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat 11 Fission 1 protein (IPR016543);NIAS_FLcDNA=001-014-D12;Expression=AK058345;TENOR=Os05t0383000-01;KEGG=Os05t0383000-01
Chr05	irgsp1_rep	five_prime_UTR	18505667	18505884	.	-	.	Parent=Os05t0383000-01
Chr05	irgsp1_rep	CDS	18505574	18505666	.	-	0	Parent=Os05t0383000-01
Chr05	irgsp1_rep	CDS	18504874	18505003	.	-	0	Parent=Os05t0383000-01
Chr05	irgsp1_rep	CDS	18504666	18504787	.	-	2	Parent=Os05t0383000-01
Chr05	irgsp1_rep	CDS	18503508	18503571	.	-	0	Parent=Os05t0383000-01
Chr05	irgsp1_rep	CDS	18503250	18503335	.	-	2	Parent=Os05t0383000-01
Chr05	irgsp1_rep	three_prime_UTR	18503044	18503249	.	-	.	Parent=Os05t0383000-01
Chr05	irgsp1_rep	mRNA	18503095	18505809	.	-	.	ID=Os05t0383000-02;Name=Os05t0383000-02;Locus_id=Os05g0383000;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK102079 (DDBJ%2C Best hit);ORF_evidence=B6T224 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat 11 Fission 1 protein (IPR016543);NIAS_FLcDNA=J033082J04;Expression=AK102079;TENOR=Os05t0383000-02;KEGG=Os05t0383000-02
Chr05	irgsp1_rep	five_prime_UTR	18505667	18505809	.	-	.	Parent=Os05t0383000-02
Chr05	irgsp1_rep	CDS	18505574	18505666	.	-	0	Parent=Os05t0383000-02
Chr05	irgsp1_rep	CDS	18504874	18505003	.	-	0	Parent=Os05t0383000-02
Chr05	irgsp1_rep	CDS	18504666	18504787	.	-	2	Parent=Os05t0383000-02
Chr05	irgsp1_rep	CDS	18503508	18503571	.	-	0	Parent=Os05t0383000-02
Chr05	irgsp1_rep	CDS	18503250	18503335	.	-	2	Parent=Os05t0383000-02
Chr05	irgsp1_rep	three_prime_UTR	18503095	18503249	.	-	.	Parent=Os05t0383000-02
Chr05	irgsp1_rep	mRNA	18508442	18512694	.	-	.	ID=Os05t0383100-01;Name=Os05t0383100-01;Locus_id=Os05g0383100;Note=Clathrin adaptor%2C mu subunit domain containing protein.;Transcript_evidence=AK121835 (DDBJ%2C Best hit);ORF_evidence=B6TBI2 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: clathrin adaptor complex (GO:0030131),Molecular Function: protein binding (GO:0005515);InterPro=Clathrin adaptor%2C mu subunit (IPR001392),Clathrin adaptor%2C mu subunit%2C C-terminal (IPR008968),Longin-like (IPR011012);NIAS_FLcDNA=J033100F12;Expression=AK121835;TENOR=Os05t0383100-01;KEGG=Os05t0383100-01
Chr05	irgsp1_rep	five_prime_UTR	18512582	18512694	.	-	.	Parent=Os05t0383100-01
Chr05	irgsp1_rep	CDS	18512547	18512581	.	-	0	Parent=Os05t0383100-01
Chr05	irgsp1_rep	CDS	18512327	18512432	.	-	1	Parent=Os05t0383100-01
Chr05	irgsp1_rep	CDS	18512081	18512191	.	-	0	Parent=Os05t0383100-01
Chr05	irgsp1_rep	CDS	18511307	18511396	.	-	0	Parent=Os05t0383100-01
Chr05	irgsp1_rep	CDS	18510324	18510571	.	-	0	Parent=Os05t0383100-01
Chr05	irgsp1_rep	CDS	18509743	18509952	.	-	1	Parent=Os05t0383100-01
Chr05	irgsp1_rep	CDS	18509429	18509636	.	-	1	Parent=Os05t0383100-01
Chr05	irgsp1_rep	CDS	18508949	18509194	.	-	0	Parent=Os05t0383100-01
Chr05	irgsp1_rep	three_prime_UTR	18508442	18508948	.	-	.	Parent=Os05t0383100-01
Chr05	irgsp1_rep	mRNA	18508834	18512433	.	+	.	ID=Os05t0383150-00;Name=Os05t0383150-00;Locus_id=Os05g0383150;Note=Non-protein coding transcript.;Transcript_evidence=BT016878 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0383150-00
Chr05	irgsp1_rep	exon	18508834	18509192	.	+	.	Parent=Os05t0383150-00
Chr05	irgsp1_rep	exon	18509421	18509618	.	+	.	Parent=Os05t0383150-00
Chr05	irgsp1_rep	exon	18509726	18509954	.	+	.	Parent=Os05t0383150-00
Chr05	irgsp1_rep	exon	18510321	18510585	.	+	.	Parent=Os05t0383150-00
Chr05	irgsp1_rep	exon	18511319	18511402	.	+	.	Parent=Os05t0383150-00
Chr05	irgsp1_rep	exon	18512089	18512169	.	+	.	Parent=Os05t0383150-00
Chr05	irgsp1_rep	exon	18512309	18512433	.	+	.	Parent=Os05t0383150-00
Chr05	irgsp1_rep	mRNA	18516730	18517759	.	-	.	ID=Os05t0383200-01;Name=Os05t0383200-01;Locus_id=Os05g0383200;Note=Conserved hypothetical protein.;Transcript_evidence=AK107536 (DDBJ%2C Best hit);ORF_evidence=A2Y452 (UniProt);NIAS_FLcDNA=002-129-H04;TENOR=Os05t0383200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	18517585	18517759	.	-	.	Parent=Os05t0383200-01
Chr05	irgsp1_rep	CDS	18516997	18517584	.	-	0	Parent=Os05t0383200-01
Chr05	irgsp1_rep	three_prime_UTR	18516730	18516996	.	-	.	Parent=Os05t0383200-01
Chr05	irgsp1_rep	mRNA	18564056	18565651	.	-	.	ID=Os05t0384300-01;Name=Os05t0384300-01;Locus_id=Os05g0384300;Note=Peptidase aspartic%2C catalytic domain containing protein.;Transcript_evidence=AK107183 (DDBJ%2C Best hit);ORF_evidence=A2Y457 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=002-124-H06;Expression=AK107183;TENOR=Os05t0384300-01;KEGG=Os05t0384300-01
Chr05	irgsp1_rep	five_prime_UTR	18565544	18565651	.	-	.	Parent=Os05t0384300-01
Chr05	irgsp1_rep	CDS	18564110	18565543	.	-	0	Parent=Os05t0384300-01
Chr05	irgsp1_rep	three_prime_UTR	18564056	18564109	.	-	.	Parent=Os05t0384300-01
Chr05	irgsp1_rep	mRNA	18575668	18578864	.	-	.	ID=Os05t0384600-01;Name=Os05t0384600-01;Locus_id=Os05g0384600;CGSNL Gene Symbol=ABCG13;CGSNL Gene Name=ABC TRANSPORTER G FAMILY MEMBER 13;Oryzabase Gene Symbol Synonym(s)=OsABCG13%2C OsABCG13_1%2C OsABCG13_2;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 13;Note=ABC transporter-like domain containing protein.;Transcript_evidence=AK111176 (DDBJ%2C Best hit);ORF_evidence=B6SXQ6 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC-2 type transporter (IPR013525),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=002-177-F03;Oryzabase=11990;Expression=AK111176;TENOR=Os05t0384600-01;KEGG=Os05t0384600-01
Chr05	irgsp1_rep	five_prime_UTR	18578758	18578864	.	-	.	Parent=Os05t0384600-01
Chr05	irgsp1_rep	CDS	18576878	18578757	.	-	0	Parent=Os05t0384600-01
Chr05	irgsp1_rep	CDS	18576264	18576411	.	-	1	Parent=Os05t0384600-01
Chr05	irgsp1_rep	three_prime_UTR	18575668	18576263	.	-	.	Parent=Os05t0384600-01
Chr05	irgsp1_rep	mRNA	18576578	18578838	.	-	.	ID=Os05t0384600-02;Name=Os05t0384600-02;Locus_id=Os05g0384600;CGSNL Gene Symbol=ABCG13;CGSNL Gene Name=ABC TRANSPORTER G FAMILY MEMBER 13;Oryzabase Gene Symbol Synonym(s)=OsABCG13%2C OsABCG13_1%2C OsABCG13_2;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 13;Note=Similar to ATPase%2C coupled to transmembrane movement of substances.;Transcript_evidence=AK107169 (DDBJ%2C Best hit),AK120526 (DDBJ%2C Best hit);ORF_evidence=B6SXQ6 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC-2 type transporter (IPR013525),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=002-124-F12,J013127B22;Oryzabase=11990;Expression=AK107169;TENOR=Os05t0384600-02;KEGG=Os05t0384600-02
Chr05	irgsp1_rep	five_prime_UTR	18578758	18578838	.	-	.	Parent=Os05t0384600-02
Chr05	irgsp1_rep	CDS	18576781	18578757	.	-	0	Parent=Os05t0384600-02
Chr05	irgsp1_rep	three_prime_UTR	18576578	18576780	.	-	.	Parent=Os05t0384600-02
Chr05	irgsp1_rep	mRNA	18586998	18595443	.	-	.	ID=Os05t0384800-01;Name=Os05t0384800-01;Locus_id=Os05g0384800;Note=Similar to Chromosome condensation regulator protein (Fragment).;Transcript_evidence=AK069987 (DDBJ%2C Best hit);ORF_evidence=NP_197443.3 (RefSeq);GO=Biological Process: cortical protein anchoring (GO:0032065),Cellular Component: cell cortex (GO:0005938),Molecular Function: protein binding (GO:0005515),Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C FYVE-type (IPR000306),Regulator of Chromosome condensation%2C RCC1 (IPR000408),Pleckstrin homology domain (IPR001849),Regulator of Chromosome condensation/beta-lactamase-inhibitor protein II (IPR009091),Zinc finger%2C FYVE/PHD-type (IPR011011),Pleckstrin homology-type (IPR011993),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Brevis radix-like domain (IPR013591),Zinc finger%2C FYVE-related (IPR017455),Pleckstrin homology domain%2C Mcp5-type (IPR024774);NIAS_FLcDNA=J023038G16;Expression=AK069987;TENOR=Os05t0384800-01;KEGG=Os05t0384800-01
Chr05	irgsp1_rep	five_prime_UTR	18595051	18595443	.	-	.	Parent=Os05t0384800-01
Chr05	irgsp1_rep	CDS	18594985	18595050	.	-	0	Parent=Os05t0384800-01
Chr05	irgsp1_rep	CDS	18593712	18593798	.	-	0	Parent=Os05t0384800-01
Chr05	irgsp1_rep	CDS	18593527	18593616	.	-	0	Parent=Os05t0384800-01
Chr05	irgsp1_rep	CDS	18592875	18592955	.	-	0	Parent=Os05t0384800-01
Chr05	irgsp1_rep	CDS	18592546	18592740	.	-	0	Parent=Os05t0384800-01
Chr05	irgsp1_rep	CDS	18590095	18592200	.	-	0	Parent=Os05t0384800-01
Chr05	irgsp1_rep	CDS	18589550	18589696	.	-	0	Parent=Os05t0384800-01
Chr05	irgsp1_rep	CDS	18588774	18589132	.	-	0	Parent=Os05t0384800-01
Chr05	irgsp1_rep	CDS	18587469	18587598	.	-	1	Parent=Os05t0384800-01
Chr05	irgsp1_rep	three_prime_UTR	18586998	18587468	.	-	.	Parent=Os05t0384800-01
Chr05	irgsp1_rep	mRNA	18629300	18630170	.	+	.	ID=Os05t0385400-01;Name=Os05t0385400-01;Locus_id=Os05g0385400;Note=Conserved hypothetical protein.;Transcript_evidence=AK109014 (DDBJ%2C Best hit);ORF_evidence=A2Y463 (UniProt);NIAS_FLcDNA=002-154-A02;Expression=AK109014;TENOR=Os05t0385400-01;KEGG=Os05t0385400-01
Chr05	irgsp1_rep	five_prime_UTR	18629300	18629340	.	+	.	Parent=Os05t0385400-01
Chr05	irgsp1_rep	CDS	18629341	18630012	.	+	0	Parent=Os05t0385400-01
Chr05	irgsp1_rep	three_prime_UTR	18630013	18630170	.	+	.	Parent=Os05t0385400-01
Chr05	irgsp1_rep	mRNA	18657052	18661788	.	-	.	ID=Os05t0385650-01;Name=Os05t0385650-01;Locus_id=Os05g0385650;Note=Conserved hypothetical protein.;Transcript_evidence=AK288391 (DDBJ%2C Best hit);ORF_evidence=Q6UTY9 (UniProt);NIAS_FLcDNA=J090027H03;TENOR=Os05t0385650-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	18660050	18661788	.	-	.	Parent=Os05t0385650-01
Chr05	irgsp1_rep	CDS	18659900	18660049	.	-	0	Parent=Os05t0385650-01
Chr05	irgsp1_rep	three_prime_UTR	18657052	18659899	.	-	.	Parent=Os05t0385650-01
Chr05	irgsp1_rep	mRNA	18680766	18685444	.	+	.	ID=Os05t0386000-01;Name=Os05t0386000-01;Locus_id=Os05g0386000;Note=Similar to Root determined nodulation 1.;Transcript_evidence=AK066148 (DDBJ%2C Best hit);ORF_evidence=E9KID2 (UniProt);NIAS_FLcDNA=J013056D23;Expression=AK066148;TENOR=Os05t0386000-01;KEGG=Os05t0386000-01
Chr05	irgsp1_rep	five_prime_UTR	18680766	18681119	.	+	.	Parent=Os05t0386000-01
Chr05	irgsp1_rep	CDS	18681120	18681512	.	+	0	Parent=Os05t0386000-01
Chr05	irgsp1_rep	CDS	18681615	18681682	.	+	0	Parent=Os05t0386000-01
Chr05	irgsp1_rep	CDS	18681766	18681967	.	+	1	Parent=Os05t0386000-01
Chr05	irgsp1_rep	CDS	18682164	18682261	.	+	0	Parent=Os05t0386000-01
Chr05	irgsp1_rep	CDS	18682349	18682418	.	+	1	Parent=Os05t0386000-01
Chr05	irgsp1_rep	CDS	18682506	18682577	.	+	0	Parent=Os05t0386000-01
Chr05	irgsp1_rep	CDS	18682718	18682831	.	+	0	Parent=Os05t0386000-01
Chr05	irgsp1_rep	CDS	18684879	18684944	.	+	0	Parent=Os05t0386000-01
Chr05	irgsp1_rep	three_prime_UTR	18684945	18685444	.	+	.	Parent=Os05t0386000-01
Chr05	irgsp1_rep	mRNA	18680791	18685421	.	+	.	ID=Os05t0386000-02;Name=Os05t0386000-02;Locus_id=Os05g0386000;Note=Similar to Root determined nodulation 1.;Transcript_evidence=AK069436 (DDBJ%2C Best hit);ORF_evidence=E9KID2 (UniProt);NIAS_FLcDNA=J023023P13;Expression=AK069436;TENOR=Os05t0386000-02;KEGG=Os05t0386000-02
Chr05	irgsp1_rep	five_prime_UTR	18680791	18681119	.	+	.	Parent=Os05t0386000-02
Chr05	irgsp1_rep	CDS	18681120	18681512	.	+	0	Parent=Os05t0386000-02
Chr05	irgsp1_rep	CDS	18681615	18681682	.	+	0	Parent=Os05t0386000-02
Chr05	irgsp1_rep	CDS	18681766	18681967	.	+	1	Parent=Os05t0386000-02
Chr05	irgsp1_rep	CDS	18682164	18682261	.	+	0	Parent=Os05t0386000-02
Chr05	irgsp1_rep	CDS	18682349	18682418	.	+	1	Parent=Os05t0386000-02
Chr05	irgsp1_rep	CDS	18682506	18682577	.	+	0	Parent=Os05t0386000-02
Chr05	irgsp1_rep	CDS	18682718	18682831	.	+	0	Parent=Os05t0386000-02
Chr05	irgsp1_rep	CDS	18684879	18684944	.	+	0	Parent=Os05t0386000-02
Chr05	irgsp1_rep	three_prime_UTR	18684945	18685421	.	+	.	Parent=Os05t0386000-02
Chr05	irgsp1_rep	mRNA	18681683	18685263	.	+	.	ID=Os05t0386000-03;Name=Os05t0386000-03;Locus_id=Os05g0386000;Note=Similar to predicted protein.;Transcript_evidence=AK121888 (DDBJ%2C Best hit);ORF_evidence=E9KID3 (UniProt);NIAS_FLcDNA=J033105A15;Expression=AK121888;TENOR=Os05t0386000-03;KEGG=Os05t0386000-03
Chr05	irgsp1_rep	five_prime_UTR	18681683	18681724	.	+	.	Parent=Os05t0386000-03
Chr05	irgsp1_rep	CDS	18681725	18681967	.	+	0	Parent=Os05t0386000-03
Chr05	irgsp1_rep	CDS	18682164	18682261	.	+	0	Parent=Os05t0386000-03
Chr05	irgsp1_rep	CDS	18682349	18682418	.	+	1	Parent=Os05t0386000-03
Chr05	irgsp1_rep	CDS	18682506	18682577	.	+	0	Parent=Os05t0386000-03
Chr05	irgsp1_rep	CDS	18682718	18682843	.	+	0	Parent=Os05t0386000-03
Chr05	irgsp1_rep	three_prime_UTR	18682844	18685263	.	+	.	Parent=Os05t0386000-03
Chr05	irgsp1_rep	mRNA	18682832	18685263	.	+	.	ID=Os05t0386000-04;Name=Os05t0386000-04;Locus_id=Os05g0386000;Note=Conserved hypothetical protein.;Transcript_evidence=AK099728 (DDBJ%2C Best hit);ORF_evidence=B8AXT3 (UniProt);NIAS_FLcDNA=J013089H10;TENOR=Os05t0386000-04;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	18682832	18684593	.	+	.	Parent=Os05t0386000-04
Chr05	irgsp1_rep	CDS	18684594	18684944	.	+	0	Parent=Os05t0386000-04
Chr05	irgsp1_rep	three_prime_UTR	18684945	18685263	.	+	.	Parent=Os05t0386000-04
Chr05	irgsp1_rep	mRNA	18681114	18685229	.	-	.	ID=Os05t0386100-00;Name=Os05t0386100-00;Locus_id=Os05g0386100;Note=Hypothetical protein.;Transcript_evidence=tplb0025h12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0386100-00
Chr05	irgsp1_rep	five_prime_UTR	18684878	18685229	.	-	.	Parent=Os05t0386100-00
Chr05	irgsp1_rep	five_prime_UTR	18682729	18682830	.	-	.	Parent=Os05t0386100-00
Chr05	irgsp1_rep	five_prime_UTR	18682518	18682584	.	-	.	Parent=Os05t0386100-00
Chr05	irgsp1_rep	five_prime_UTR	18682349	18682429	.	-	.	Parent=Os05t0386100-00
Chr05	irgsp1_rep	five_prime_UTR	18682162	18682261	.	-	.	Parent=Os05t0386100-00
Chr05	irgsp1_rep	five_prime_UTR	18681766	18681965	.	-	.	Parent=Os05t0386100-00
Chr05	irgsp1_rep	five_prime_UTR	18681646	18681682	.	-	.	Parent=Os05t0386100-00
Chr05	irgsp1_rep	CDS	18681612	18681645	.	-	0	Parent=Os05t0386100-00
Chr05	irgsp1_rep	CDS	18681114	18681508	.	-	2	Parent=Os05t0386100-00
Chr05	irgsp1_rep	mRNA	18693898	18695408	.	-	.	ID=Os05t0386201-00;Name=Os05t0386201-00;Locus_id=Os05g0386201;Note=Zinc finger%2C lateral root primordium type 1 domain containing protein.;Transcript_evidence=EU959412 (DDBJ);ORF_evidence=Q6AV91 (UniProt);InterPro=Zinc finger%2C lateral root primordium type 1 (IPR006510),Lateral Root Primordium type 1%2C C-terminal (IPR006511),Protein of unknown function DUF702 (IPR007818);TENOR=Os05t0386201-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	18694517	18695408	.	-	0	Parent=Os05t0386201-00
Chr05	irgsp1_rep	CDS	18694260	18694407	.	-	2	Parent=Os05t0386201-00
Chr05	irgsp1_rep	CDS	18694090	18694201	.	-	1	Parent=Os05t0386201-00
Chr05	irgsp1_rep	three_prime_UTR	18693898	18694089	.	-	.	Parent=Os05t0386201-00
Chr05	irgsp1_rep	mRNA	18713908	18714603	.	+	.	ID=Os05t0386400-00;Name=Os05t0386400-00;Locus_id=Os05g0386400;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q60E71 (UniProt);TENOR=Os05t0386400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	18713908	18714603	.	+	0	Parent=Os05t0386400-00
Chr05	irgsp1_rep	mRNA	18720446	18723715	.	+	.	ID=Os05t0386700-01;Name=Os05t0386700-01;Locus_id=Os05g0386700;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK067864 (DDBJ%2C Best hit),AK066508 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013126A02,J013068L12;TENOR=Os05t0386700-01
Chr05	irgsp1_rep	five_prime_UTR	18720446	18720599	.	+	.	Parent=Os05t0386700-01
Chr05	irgsp1_rep	five_prime_UTR	18721651	18723034	.	+	.	Parent=Os05t0386700-01
Chr05	irgsp1_rep	CDS	18723035	18723481	.	+	0	Parent=Os05t0386700-01
Chr05	irgsp1_rep	three_prime_UTR	18723482	18723715	.	+	.	Parent=Os05t0386700-01
Chr05	irgsp1_rep	mRNA	18720447	18724242	.	+	.	ID=Os05t0386700-02;Name=Os05t0386700-02;Locus_id=Os05g0386700;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK065501 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013026K11;Expression=AK065501;TENOR=Os05t0386700-02;KEGG=Os05t0386700-02
Chr05	irgsp1_rep	five_prime_UTR	18720447	18723034	.	+	.	Parent=Os05t0386700-02
Chr05	irgsp1_rep	CDS	18723035	18723481	.	+	0	Parent=Os05t0386700-02
Chr05	irgsp1_rep	three_prime_UTR	18723482	18724242	.	+	.	Parent=Os05t0386700-02
Chr05	irgsp1_rep	mRNA	18721311	18724814	.	-	.	ID=Os05t0386800-01;Name=Os05t0386800-01;Locus_id=Os05g0386800;RAP-DB Gene Symbol Synonym(s)=BC1L4%2C OsBC1L4;RAP-DB Gene Name Synonym(s)=BRITTLE CULM-LIKE 4%2C brittle culm 1 like 4;CGSNL Gene Symbol=BC1L4;CGSNL Gene Name=BRITTLE CULM-LIKE 4;Oryzabase Gene Symbol Synonym(s)=OsBC1L4%2C OsPCS7%2C PCS7;Oryzabase Gene Name Synonym(s)=BRITTLE CULM1-like 4%2C Phytochelatin synthase 7;Note=COBRA-like protein%2C Cellulose synthesis;Transcript_evidence=AK070472;ORF_evidence=Q60E70;GO=Biological Process: cellulose microfibril organization (GO:0010215),Biological Process: cell growth (GO:0016049),Cellular Component: anchored component of membrane (GO:0031225);InterPro=COBRA%2C plant (IPR006918);NIAS_FLcDNA=J023054D22;Manual Curation=June 10%2C 2016;Literature_PMID=21264494,19688299;Oryzabase=22985;Expression=AK070472;TENOR=Os05t0386800-01;KEGG=Os05t0386800-01
Chr05	irgsp1_rep	five_prime_UTR	18724557	18724814	.	-	.	Parent=Os05t0386800-01
Chr05	irgsp1_rep	CDS	18724454	18724556	.	-	0	Parent=Os05t0386800-01
Chr05	irgsp1_rep	CDS	18723789	18723868	.	-	2	Parent=Os05t0386800-01
Chr05	irgsp1_rep	CDS	18723048	18723504	.	-	0	Parent=Os05t0386800-01
Chr05	irgsp1_rep	CDS	18722491	18722650	.	-	2	Parent=Os05t0386800-01
Chr05	irgsp1_rep	CDS	18722119	18722399	.	-	1	Parent=Os05t0386800-01
Chr05	irgsp1_rep	CDS	18721706	18721998	.	-	2	Parent=Os05t0386800-01
Chr05	irgsp1_rep	three_prime_UTR	18721311	18721705	.	-	.	Parent=Os05t0386800-01
Chr05	irgsp1_rep	mRNA	18721497	18724738	.	-	.	ID=Os05t0386800-02;Name=Os05t0386800-02;Locus_id=Os05g0386800;CGSNL Gene Symbol=BC1L4;CGSNL Gene Name=BRITTLE CULM-LIKE 4;Oryzabase Gene Symbol Synonym(s)=OsBC1L4%2C OsPCS7%2C PCS7;Oryzabase Gene Name Synonym(s)=BRITTLE CULM1-like 4%2C Phytochelatin synthase 7;Note=Similar to Phytochelatin synthetase-like protein 2.;Transcript_evidence=AK060897 (DDBJ%2C Best hit);ORF_evidence=Q60E70 (UniProt);InterPro=Glycosyl-phosphatidyl inositol-anchored%2C plant (IPR006918),COBRA-like (IPR017391);NIAS_FLcDNA=001-035-D01;Oryzabase=22985;Expression=AK060897;TENOR=Os05t0386800-02;KEGG=Os05t0386800-02
Chr05	irgsp1_rep	five_prime_UTR	18724557	18724738	.	-	.	Parent=Os05t0386800-02
Chr05	irgsp1_rep	CDS	18724454	18724556	.	-	0	Parent=Os05t0386800-02
Chr05	irgsp1_rep	CDS	18723789	18723868	.	-	2	Parent=Os05t0386800-02
Chr05	irgsp1_rep	CDS	18723048	18723504	.	-	0	Parent=Os05t0386800-02
Chr05	irgsp1_rep	CDS	18722491	18722650	.	-	2	Parent=Os05t0386800-02
Chr05	irgsp1_rep	CDS	18722119	18722399	.	-	1	Parent=Os05t0386800-02
Chr05	irgsp1_rep	CDS	18721706	18721998	.	-	2	Parent=Os05t0386800-02
Chr05	irgsp1_rep	three_prime_UTR	18721497	18721705	.	-	.	Parent=Os05t0386800-02
Chr05	irgsp1_rep	mRNA	18721497	18722322	.	-	.	ID=Os05t0386800-03;Name=Os05t0386800-03;Locus_id=Os05g0386800;CGSNL Gene Symbol=BC1L4;CGSNL Gene Name=BRITTLE CULM-LIKE 4;Oryzabase Gene Symbol Synonym(s)=OsBC1L4%2C OsPCS7%2C PCS7;Oryzabase Gene Name Synonym(s)=BRITTLE CULM1-like 4%2C Phytochelatin synthase 7;Note=Similar to COBRA-like protein 3.;Transcript_evidence=AK062748 (DDBJ%2C Best hit);ORF_evidence=Q60E70 (UniProt);NIAS_FLcDNA=001-106-F11;Oryzabase=22985;Expression=AK062748;TENOR=Os05t0386800-03;KEGG=Os05t0386800-03
Chr05	irgsp1_rep	five_prime_UTR	18722321	18722322	.	-	.	Parent=Os05t0386800-03
Chr05	irgsp1_rep	CDS	18722119	18722320	.	-	0	Parent=Os05t0386800-03
Chr05	irgsp1_rep	CDS	18721706	18721998	.	-	2	Parent=Os05t0386800-03
Chr05	irgsp1_rep	three_prime_UTR	18721497	18721705	.	-	.	Parent=Os05t0386800-03
Chr05	irgsp1_rep	mRNA	18728817	18734916	.	+	.	ID=Os05t0386900-01;Name=Os05t0386900-01;Locus_id=Os05g0386900;Note=Reticulon family protein.;Transcript_evidence=AK073634 (DDBJ%2C Best hit);ORF_evidence=NP_192086.1 (RefSeq);GO=Cellular Component: endoplasmic reticulum (GO:0005783);InterPro=Reticulon (IPR003388),Nucleotide-diphospho-sugar transferase (IPR005069);NIAS_FLcDNA=J033047G07;Expression=AK073634;TENOR=Os05t0386900-01;KEGG=Os05t0386900-01 (EC:2.4.2.-)
Chr05	irgsp1_rep	five_prime_UTR	18728817	18728867	.	+	.	Parent=Os05t0386900-01
Chr05	irgsp1_rep	CDS	18728868	18729338	.	+	0	Parent=Os05t0386900-01
Chr05	irgsp1_rep	CDS	18729434	18729595	.	+	0	Parent=Os05t0386900-01
Chr05	irgsp1_rep	CDS	18729670	18729885	.	+	0	Parent=Os05t0386900-01
Chr05	irgsp1_rep	CDS	18731126	18731335	.	+	0	Parent=Os05t0386900-01
Chr05	irgsp1_rep	three_prime_UTR	18731336	18732454	.	+	.	Parent=Os05t0386900-01
Chr05	irgsp1_rep	three_prime_UTR	18732700	18732856	.	+	.	Parent=Os05t0386900-01
Chr05	irgsp1_rep	three_prime_UTR	18733200	18733272	.	+	.	Parent=Os05t0386900-01
Chr05	irgsp1_rep	three_prime_UTR	18734368	18734916	.	+	.	Parent=Os05t0386900-01
Chr05	irgsp1_rep	mRNA	18728836	18731846	.	+	.	ID=Os05t0386900-02;Name=Os05t0386900-02;Locus_id=Os05g0386900;Note=Reticulon family protein.;Transcript_evidence=AK071425 (DDBJ%2C Best hit);ORF_evidence=NP_192086.1 (RefSeq);GO=Cellular Component: endoplasmic reticulum (GO:0005783);InterPro=Reticulon (IPR003388),Nucleotide-diphospho-sugar transferase (IPR005069);NIAS_FLcDNA=J023096B08;Expression=AK071425;TENOR=Os05t0386900-02;KEGG=Os05t0386900-02 (EC:2.4.2.-)
Chr05	irgsp1_rep	five_prime_UTR	18728836	18728867	.	+	.	Parent=Os05t0386900-02
Chr05	irgsp1_rep	CDS	18728868	18729338	.	+	0	Parent=Os05t0386900-02
Chr05	irgsp1_rep	CDS	18729434	18729595	.	+	0	Parent=Os05t0386900-02
Chr05	irgsp1_rep	CDS	18729670	18729885	.	+	0	Parent=Os05t0386900-02
Chr05	irgsp1_rep	CDS	18731126	18731335	.	+	0	Parent=Os05t0386900-02
Chr05	irgsp1_rep	three_prime_UTR	18731336	18731846	.	+	.	Parent=Os05t0386900-02
Chr05	irgsp1_rep	mRNA	18732353	18734874	.	+	.	ID=Os05t0386900-03;Name=Os05t0386900-03;Locus_id=Os05g0386900;Note=Hypothetical conserved gene.;Transcript_evidence=AK059319 (DDBJ%2C Best hit);ORF_evidence=A2Y472 (UniProt);NIAS_FLcDNA=001-025-H06;Expression=AK059319;TENOR=Os05t0386900-03;KEGG=Os05t0386900-03
Chr05	irgsp1_rep	five_prime_UTR	18732353	18732423	.	+	.	Parent=Os05t0386900-03
Chr05	irgsp1_rep	CDS	18732424	18732454	.	+	0	Parent=Os05t0386900-03
Chr05	irgsp1_rep	CDS	18732700	18732856	.	+	2	Parent=Os05t0386900-03
Chr05	irgsp1_rep	CDS	18733200	18733272	.	+	1	Parent=Os05t0386900-03
Chr05	irgsp1_rep	CDS	18734368	18734628	.	+	0	Parent=Os05t0386900-03
Chr05	irgsp1_rep	three_prime_UTR	18734629	18734874	.	+	.	Parent=Os05t0386900-03
Chr05	irgsp1_rep	mRNA	18738656	18741959	.	+	.	ID=Os05t0387200-01;Name=Os05t0387200-01;Locus_id=Os05g0387200;RAP-DB Gene Symbol Synonym(s)=OsSQD1;RAP-DB Gene Name Synonym(s)=sulfoquinovosyl diacylglycerol1;CGSNL Gene Symbol=SQD1;CGSNL Gene Name=SULFOQUINOVOSYLDIACYLGLYCEROL SYNTHASE 1;Oryzabase Gene Symbol Synonym(s)=OsSQD1;Oryzabase Gene Name Synonym(s)=sulfoquinovosyl transferase-like protein 1%2C Sulfoquinovosyldiacylglycerol synthase 1;Note=UDP-sulfoquinovose synthase%2C Homeostasis of phosphate (Pi) and sulfur (S);Transcript_evidence=AK060744,AK065310;ORF_evidence=Q60E66;GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD(P)-binding domain superfamily (IPR036291),NAD-dependent epimerase/dehydratase (IPR001509);NIAS_FLcDNA=001-032-E09,J013002O14;Manual Curation=April 9%2C 2020;Literature_PMID=32266981;Oryzabase=23324;TENOR=Os05t0387200-01;Subcellular location=chloroplast (GO:0009507)
Chr05	irgsp1_rep	five_prime_UTR	18738656	18738958	.	+	.	Parent=Os05t0387200-01
Chr05	irgsp1_rep	five_prime_UTR	18739395	18739432	.	+	.	Parent=Os05t0387200-01
Chr05	irgsp1_rep	CDS	18739433	18740470	.	+	0	Parent=Os05t0387200-01
Chr05	irgsp1_rep	CDS	18741109	18741510	.	+	0	Parent=Os05t0387200-01
Chr05	irgsp1_rep	three_prime_UTR	18741511	18741959	.	+	.	Parent=Os05t0387200-01
Chr05	irgsp1_rep	mRNA	18740096	18741856	.	+	.	ID=Os05t0387200-02;Name=Os05t0387200-02;Locus_id=Os05g0387200;CGSNL Gene Symbol=SQD1;CGSNL Gene Name=SULFOQUINOVOSYLDIACYLGLYCEROL SYNTHASE 1;Oryzabase Gene Symbol Synonym(s)=OsSQD1;Oryzabase Gene Name Synonym(s)=sulfoquinovosyl transferase-like protein 1%2C Sulfoquinovosyldiacylglycerol synthase 1;Note=Similar to UDP-sulfoquinovose synthase.;Transcript_evidence=AK061359 (DDBJ%2C Best hit),AK104679 (DDBJ%2C Best hit);ORF_evidence=NP_001148807.1 (RefSeq);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509);NIAS_FLcDNA=006-304-B10,001-035-E12;Oryzabase=23324;Expression=AK061359;TENOR=Os05t0387200-02;KEGG=Os05t0387200-02 (EC:3.13.1.1)
Chr05	irgsp1_rep	CDS	18740096	18740470	.	+	0	Parent=Os05t0387200-02
Chr05	irgsp1_rep	CDS	18741109	18741510	.	+	0	Parent=Os05t0387200-02
Chr05	irgsp1_rep	three_prime_UTR	18741511	18741856	.	+	.	Parent=Os05t0387200-02
Chr05	irgsp1_rep	mRNA	18742852	18743489	.	-	.	ID=Os05t0387300-01;Name=Os05t0387300-01;Locus_id=Os05g0387300;Note=Hypothetical protein.;Transcript_evidence=AK059416 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=001-027-D06;Expression=AK059416;TENOR=Os05t0387300-01;KEGG=Os05t0387300-01
Chr05	irgsp1_rep	CDS	18743172	18743489	.	-	0	Parent=Os05t0387300-01
Chr05	irgsp1_rep	three_prime_UTR	18742852	18743171	.	-	.	Parent=Os05t0387300-01
Chr05	irgsp1_rep	mRNA	18757319	18760229	.	+	.	ID=Os05t0387700-01;Name=Os05t0387700-01;Locus_id=Os05g0387700;CGSNL Gene Symbol=RLCK186;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 186;Oryzabase Gene Symbol Synonym(s)=OsRLCK186;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 186;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK120230 (DDBJ%2C Best hit);ORF_evidence=A2Y476 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013043D20;Oryzabase=18886;Expression=AK120230;TENOR=Os05t0387700-01;KEGG=Os05t0387700-01
Chr05	irgsp1_rep	five_prime_UTR	18757319	18757510	.	+	.	Parent=Os05t0387700-01
Chr05	irgsp1_rep	CDS	18757511	18759550	.	+	0	Parent=Os05t0387700-01
Chr05	irgsp1_rep	three_prime_UTR	18759551	18760229	.	+	.	Parent=Os05t0387700-01
Chr05	irgsp1_rep	mRNA	18757360	18759604	.	+	.	ID=Os05t0387700-02;Name=Os05t0387700-02;Locus_id=Os05g0387700;CGSNL Gene Symbol=RLCK186;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 186;Oryzabase Gene Symbol Synonym(s)=OsRLCK186;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 186;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK105254 (DDBJ%2C Best hit);ORF_evidence=A2Y476 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-114-D09;Oryzabase=18886;Expression=AK105254;TENOR=Os05t0387700-02;KEGG=Os05t0387700-02
Chr05	irgsp1_rep	five_prime_UTR	18757360	18757510	.	+	.	Parent=Os05t0387700-02
Chr05	irgsp1_rep	CDS	18757511	18759550	.	+	0	Parent=Os05t0387700-02
Chr05	irgsp1_rep	three_prime_UTR	18759551	18759604	.	+	.	Parent=Os05t0387700-02
Chr05	irgsp1_rep	mRNA	18763585	18768243	.	+	.	ID=Os05t0387750-01;Name=Os05t0387750-01;Locus_id=Os05g0387750;Note=Hypothetical gene.;Transcript_evidence=AK288869 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090078E03;TENOR=Os05t0387750-01;KEGG=Os05t0387750-01
Chr05	irgsp1_rep	five_prime_UTR	18763585	18767019	.	+	.	Parent=Os05t0387750-01
Chr05	irgsp1_rep	CDS	18767020	18767355	.	+	0	Parent=Os05t0387750-01
Chr05	irgsp1_rep	three_prime_UTR	18767356	18768243	.	+	.	Parent=Os05t0387750-01
Chr05	irgsp1_rep	mRNA	18763653	18767184	.	-	.	ID=Os05t0387800-01;Name=Os05t0387800-01;Locus_id=Os05g0387800;Note=Acyl-CoA N-acyltransferase domain containing protein.;Transcript_evidence=AK101626 (DDBJ%2C Best hit);ORF_evidence=B6TH38 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: N-acetyltransferase activity (GO:0008080);InterPro=GCN5-related N-acetyltransferase (GNAT) domain (IPR000182),Acyl-CoA N-acyltransferase (IPR016181);NIAS_FLcDNA=J033052M16;Expression=AK101626;TENOR=Os05t0387800-01;KEGG=Os05t0387800-01
Chr05	irgsp1_rep	five_prime_UTR	18766446	18767184	.	-	.	Parent=Os05t0387800-01
Chr05	irgsp1_rep	five_prime_UTR	18766137	18766230	.	-	.	Parent=Os05t0387800-01
Chr05	irgsp1_rep	CDS	18766059	18766136	.	-	0	Parent=Os05t0387800-01
Chr05	irgsp1_rep	CDS	18765496	18765598	.	-	0	Parent=Os05t0387800-01
Chr05	irgsp1_rep	CDS	18765186	18765265	.	-	2	Parent=Os05t0387800-01
Chr05	irgsp1_rep	CDS	18764750	18765079	.	-	0	Parent=Os05t0387800-01
Chr05	irgsp1_rep	CDS	18764460	18764533	.	-	0	Parent=Os05t0387800-01
Chr05	irgsp1_rep	CDS	18764304	18764346	.	-	1	Parent=Os05t0387800-01
Chr05	irgsp1_rep	CDS	18764162	18764230	.	-	0	Parent=Os05t0387800-01
Chr05	irgsp1_rep	CDS	18763920	18763931	.	-	0	Parent=Os05t0387800-01
Chr05	irgsp1_rep	three_prime_UTR	18763653	18763919	.	-	.	Parent=Os05t0387800-01
Chr05	irgsp1_rep	mRNA	18769046	18772114	.	-	.	ID=Os05t0387900-01;Name=Os05t0387900-01;Locus_id=Os05g0387900;Note=Similar to Protein N-terminal glutamine amidohydrolase.;Transcript_evidence=AK062285 (DDBJ%2C Best hit);ORF_evidence=B8AXU2 (UniProt);GO=Molecular Function: hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds%2C in linear amides (GO:0016811);InterPro=Protein N-terminal glutamine amidohydrolase (IPR019161),Protein N-terminal glutamine amidohydrolase%2C alpha beta roll (IPR023128);NIAS_FLcDNA=001-100-D04;Expression=AK062285;TENOR=Os05t0387900-01;KEGG=Os05t0387900-01
Chr05	irgsp1_rep	five_prime_UTR	18772083	18772114	.	-	.	Parent=Os05t0387900-01
Chr05	irgsp1_rep	CDS	18771985	18772082	.	-	0	Parent=Os05t0387900-01
Chr05	irgsp1_rep	CDS	18770702	18770807	.	-	1	Parent=Os05t0387900-01
Chr05	irgsp1_rep	CDS	18770467	18770544	.	-	0	Parent=Os05t0387900-01
Chr05	irgsp1_rep	CDS	18770200	18770333	.	-	0	Parent=Os05t0387900-01
Chr05	irgsp1_rep	CDS	18769657	18769781	.	-	1	Parent=Os05t0387900-01
Chr05	irgsp1_rep	CDS	18769198	18769352	.	-	2	Parent=Os05t0387900-01
Chr05	irgsp1_rep	three_prime_UTR	18769046	18769197	.	-	.	Parent=Os05t0387900-01
Chr05	irgsp1_rep	mRNA	18772849	18773587	.	+	.	ID=Os05t0388025-00;Name=Os05t0388025-00;Locus_id=Os05g0388025;Note=Similar to DNA binding protein.;Transcript_evidence=AY178579 (DDBJ);ORF_evidence=NP_001150470.1 (RefSeq);TENOR=Os05t0388025-00
Chr05	irgsp1_rep	five_prime_UTR	18772849	18772885	.	+	.	Parent=Os05t0388025-00
Chr05	irgsp1_rep	CDS	18772886	18773587	.	+	0	Parent=Os05t0388025-00
Chr05	irgsp1_rep	mRNA	18774154	18779300	.	-	.	ID=Os05t0388151-00;Name=Os05t0388151-00;Locus_id=Os05g0388151;Note=Hypothetical protein.;Transcript_evidence=BT034820 (DDBJ);ORF_evidence=GeneMark;TENOR=Os05t0388151-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	18779250	18779300	.	-	.	Parent=Os05t0388151-00
Chr05	irgsp1_rep	CDS	18778985	18779249	.	-	0	Parent=Os05t0388151-00
Chr05	irgsp1_rep	CDS	18774154	18774453	.	-	2	Parent=Os05t0388151-00
Chr05	irgsp1_rep	mRNA	18778899	18786819	.	+	.	ID=Os05t0388400-01;Name=Os05t0388400-01;Locus_id=Os05g0388400;Note=Similar to cDNA clone:J013089M16%2C full insert sequence.;Transcript_evidence=AK289181 (DDBJ%2C Best hit),AK243031 (DDBJ%2C Best hit);ORF_evidence=NP_001147993.1 (RefSeq);NIAS_FLcDNA=J100029B03,J100004F15;TENOR=Os05t0388400-01;KEGG=Os05t0388400-01
Chr05	irgsp1_rep	five_prime_UTR	18778899	18779286	.	+	.	Parent=Os05t0388400-01
Chr05	irgsp1_rep	CDS	18779287	18779304	.	+	0	Parent=Os05t0388400-01
Chr05	irgsp1_rep	CDS	18779635	18779788	.	+	0	Parent=Os05t0388400-01
Chr05	irgsp1_rep	CDS	18779906	18780034	.	+	2	Parent=Os05t0388400-01
Chr05	irgsp1_rep	CDS	18781363	18781541	.	+	2	Parent=Os05t0388400-01
Chr05	irgsp1_rep	CDS	18782278	18782391	.	+	0	Parent=Os05t0388400-01
Chr05	irgsp1_rep	CDS	18782520	18782741	.	+	0	Parent=Os05t0388400-01
Chr05	irgsp1_rep	three_prime_UTR	18782742	18782956	.	+	.	Parent=Os05t0388400-01
Chr05	irgsp1_rep	three_prime_UTR	18783701	18783774	.	+	.	Parent=Os05t0388400-01
Chr05	irgsp1_rep	three_prime_UTR	18784748	18784826	.	+	.	Parent=Os05t0388400-01
Chr05	irgsp1_rep	three_prime_UTR	18785339	18785646	.	+	.	Parent=Os05t0388400-01
Chr05	irgsp1_rep	three_prime_UTR	18786138	18786228	.	+	.	Parent=Os05t0388400-01
Chr05	irgsp1_rep	three_prime_UTR	18786345	18786819	.	+	.	Parent=Os05t0388400-01
Chr05	irgsp1_rep	mRNA	18789640	18793642	.	+	.	ID=Os05t0388500-01;Name=Os05t0388500-01;Locus_id=Os05g0388500;Oryzabase Gene Name Synonym(s)=Chloroplast 50S ribosomal protein L1;Note=Similar to 50S ribosomal protein L1.;Transcript_evidence=AK065313 (DDBJ%2C Best hit),AK098990 (DDBJ%2C Best hit),AK104689 (DDBJ%2C Best hit);ORF_evidence=NP_001150277.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: large ribosomal subunit (GO:0015934),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L1 (IPR002143),Ribosomal protein L1%2C bacterial-type (IPR005878),Ribosomal protein L1%2C 2-layer alpha/beta-sandwich (IPR016094),Ribosomal protein L1%2C 3-layer alpha/beta-sandwich (IPR016095),Ribosomal protein L1%2C conserved site (IPR023673),Ribosomal protein L1%2C superfamily (IPR023674);NIAS_FLcDNA=J013002O22,J013094L23,001-036-F09;Oryzabase=9617;TENOR=Os05t0388500-01
Chr05	irgsp1_rep	five_prime_UTR	18789640	18789704	.	+	.	Parent=Os05t0388500-01
Chr05	irgsp1_rep	CDS	18789705	18790073	.	+	0	Parent=Os05t0388500-01
Chr05	irgsp1_rep	CDS	18790180	18790359	.	+	0	Parent=Os05t0388500-01
Chr05	irgsp1_rep	CDS	18790470	18790524	.	+	0	Parent=Os05t0388500-01
Chr05	irgsp1_rep	CDS	18790791	18790918	.	+	2	Parent=Os05t0388500-01
Chr05	irgsp1_rep	CDS	18791380	18791463	.	+	0	Parent=Os05t0388500-01
Chr05	irgsp1_rep	CDS	18792988	18793113	.	+	0	Parent=Os05t0388500-01
Chr05	irgsp1_rep	CDS	18793195	18793332	.	+	0	Parent=Os05t0388500-01
Chr05	irgsp1_rep	three_prime_UTR	18793333	18793642	.	+	.	Parent=Os05t0388500-01
Chr05	irgsp1_rep	mRNA	18793318	18793662	.	-	.	ID=Os05t0388550-00;Name=Os05t0388550-00;Locus_id=Os05g0388550;Note=Non-protein coding transcript.;Transcript_evidence=BT016920 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0388550-00
Chr05	irgsp1_rep	exon	18793318	18793662	.	-	.	Parent=Os05t0388550-00
Chr05	irgsp1_rep	mRNA	18796477	18801851	.	+	.	ID=Os05t0388600-01;Name=Os05t0388600-01;Locus_id=Os05g0388600;Note=Protein of unknown function DUF3411 domain containing protein.;Transcript_evidence=AK105904 (DDBJ%2C Best hit);ORF_evidence=A2Y485 (UniProt);InterPro=Protein of unknown function DUF3411 (IPR021825);NIAS_FLcDNA=001-204-F12;Expression=AK105904;TENOR=Os05t0388600-01;KEGG=Os05t0388600-01
Chr05	irgsp1_rep	five_prime_UTR	18796477	18796551	.	+	.	Parent=Os05t0388600-01
Chr05	irgsp1_rep	CDS	18796552	18797085	.	+	0	Parent=Os05t0388600-01
Chr05	irgsp1_rep	CDS	18798031	18798099	.	+	0	Parent=Os05t0388600-01
Chr05	irgsp1_rep	CDS	18799385	18799516	.	+	0	Parent=Os05t0388600-01
Chr05	irgsp1_rep	CDS	18799670	18799723	.	+	0	Parent=Os05t0388600-01
Chr05	irgsp1_rep	CDS	18799816	18799860	.	+	0	Parent=Os05t0388600-01
Chr05	irgsp1_rep	CDS	18800412	18800551	.	+	0	Parent=Os05t0388600-01
Chr05	irgsp1_rep	CDS	18801353	18801478	.	+	1	Parent=Os05t0388600-01
Chr05	irgsp1_rep	CDS	18801571	18801607	.	+	1	Parent=Os05t0388600-01
Chr05	irgsp1_rep	three_prime_UTR	18801608	18801851	.	+	.	Parent=Os05t0388600-01
Chr05	irgsp1_rep	mRNA	18813590	18817685	.	+	.	ID=Os05t0389000-01;Name=Os05t0389000-01;Locus_id=Os05g0389000;CGSNL Gene Symbol=NGR5;CGSNL Gene Name=NITROGEN-MEDIATED TILLER GROWTH RESPONSE 5;Oryzabase Gene Symbol Synonym(s)=ERF142%2C OsERF#142%2C OsERF142%2C AP2/EREBP#049%2C AP2/EREBP49%2C SMOS1%2C OsSMOS1%2C SHB%2C OsAP2-EREBP-049%2C RLA1%2C RLA1/SMOS1%2C OsERF142/SMOS1%2C OsNGR5;Oryzabase Gene Name Synonym(s)=ethylene response factor 142%2C APETALA2/ethylene-responsive element binding protein 49%2C small organ size1%2C small organ size 1%2C SHOEBOX%2C shoebox%2C reduced leaf angle1%2C reduced leaf angle 1;Note=Similar to AP2-1 protein (Fragment).;Transcript_evidence=AK059324;ORF_evidence=Q60E56;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Biological Process: multicellular organismal development (GO:0007275),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700);InterPro=AP2-like ethylene-responsive transcription factor (IPR031112);NIAS_FLcDNA=001-025-H11;Manual Curation=January 18%2C 2016;Oryzabase=10635;Expression=AK059324;TENOR=Os05t0389000-01;KEGG=Os05t0389000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	18813590	18813680	.	+	.	Parent=Os05t0389000-01
Chr05	irgsp1_rep	five_prime_UTR	18814331	18814360	.	+	.	Parent=Os05t0389000-01
Chr05	irgsp1_rep	CDS	18814361	18814404	.	+	0	Parent=Os05t0389000-01
Chr05	irgsp1_rep	CDS	18814480	18814530	.	+	1	Parent=Os05t0389000-01
Chr05	irgsp1_rep	CDS	18815732	18815799	.	+	1	Parent=Os05t0389000-01
Chr05	irgsp1_rep	CDS	18815912	18816480	.	+	2	Parent=Os05t0389000-01
Chr05	irgsp1_rep	CDS	18816579	18816629	.	+	0	Parent=Os05t0389000-01
Chr05	irgsp1_rep	three_prime_UTR	18816630	18816675	.	+	.	Parent=Os05t0389000-01
Chr05	irgsp1_rep	three_prime_UTR	18817399	18817685	.	+	.	Parent=Os05t0389000-01
Chr05	irgsp1_rep	mRNA	18812181	18817694	.	+	.	ID=Os05t0389000-02;Name=Os05t0389000-02;Locus_id=Os05g0389000;RAP-DB Gene Symbol Synonym(s)=ERF142%2C OsERF#142%2C OsERF142%2C AP2/EREBP#049%2C AP2/EREBP49%2C SMOS1%2C OsSMOS1%2C SHB%2C OsAP2-EREBP-049%2C NGR5;RAP-DB Gene Name Synonym(s)=ETHYLENE RESPONSE FACTOR 142%2C ethylene response factor 142%2C APETALA2/ethylene-responsive element binding protein 49%2C small organ size1%2C small organ size 1%2C SHOEBOX%2C shoebox%2C NITROGEN-MEDIATED TILLER GROWTH RESPONSE 5;CGSNL Gene Symbol=ERF142;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 142;Oryzabase Gene Symbol Synonym(s)=OsERF#142%2C OsERF142%2C AP2/EREBP#049%2C AP2/EREBP49%2C SMOS1%2C OsSMOS1%2C SHB%2C OsAP2-EREBP-049%2C RLA1%2C RLA1/SMOS1%2C OsERF142/SMOS1;Oryzabase Gene Name Synonym(s)=ethylene response factor 142%2C APETALA2/ethylene-responsive element binding protein 49%2C small organ size1%2C small organ size 1%2C SHOEBOX%2C shoebox%2C reduced leaf angle1%2C reduced leaf angle 1;Note=AP2/ERF transcription factor%2C Regulation of cell elongation and proliferation in root meristem%2C Organ size control%2C Nitrogen-responsive regulation of tillering;Transcript_evidence=AB897877;ORF_evidence=X5HYT8;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Biological Process: multicellular organismal development (GO:0007275),Molecular Function: DNA binding (GO:0003677),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700);InterPro=AP2-like ethylene-responsive transcription factor (IPR031112),DNA-binding domain (IPR016177),AP2/ERF domain (IPR001471);Manual Curation=July 28%2C 2020;Literature_PMID=32029600,26275148,24486766;Oryzabase=10635;Subcellular location=nucleus (GO:0005634) [mainly], cytosol (GO:0005829)
Chr05	irgsp1_rep	five_prime_UTR	18812181	18812249	.	+	.	Parent=Os05t0389000-02
Chr05	irgsp1_rep	CDS	18812250	18812533	.	+	0	Parent=Os05t0389000-02
Chr05	irgsp1_rep	CDS	18813207	18813289	.	+	1	Parent=Os05t0389000-02
Chr05	irgsp1_rep	CDS	18813500	18813508	.	+	2	Parent=Os05t0389000-02
Chr05	irgsp1_rep	CDS	18813592	18813680	.	+	2	Parent=Os05t0389000-02
Chr05	irgsp1_rep	CDS	18814331	18814404	.	+	0	Parent=Os05t0389000-02
Chr05	irgsp1_rep	CDS	18814480	18814530	.	+	1	Parent=Os05t0389000-02
Chr05	irgsp1_rep	CDS	18815732	18815799	.	+	1	Parent=Os05t0389000-02
Chr05	irgsp1_rep	CDS	18815912	18816480	.	+	2	Parent=Os05t0389000-02
Chr05	irgsp1_rep	CDS	18816579	18816629	.	+	0	Parent=Os05t0389000-02
Chr05	irgsp1_rep	three_prime_UTR	18816630	18816675	.	+	.	Parent=Os05t0389000-02
Chr05	irgsp1_rep	three_prime_UTR	18817399	18817694	.	+	.	Parent=Os05t0389000-02
Chr05	irgsp1_rep	mRNA	18838375	18840754	.	-	.	ID=Os05t0389300-01;Name=Os05t0389300-01;Locus_id=Os05g0389300;Oryzabase Gene Name Synonym(s)=Sm gene%2C Sm family protein;Note=Similar to SAD1.;Transcript_evidence=AK059190 (DDBJ%2C Best hit);ORF_evidence=NP_001149693.1 (RefSeq);InterPro=Like-Sm ribonucleoprotein (LSM) domain (IPR001163),Like-Sm ribonucleoprotein (LSM) domain%2C eukaryotic/archaea-type (IPR006649),Like-Sm ribonucleoprotein (LSM)-related domain (IPR010920);NIAS_FLcDNA=001-023-H03;Oryzabase=15648;TENOR=Os05t0389300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	18840632	18840754	.	-	.	Parent=Os05t0389300-01
Chr05	irgsp1_rep	CDS	18840595	18840631	.	-	0	Parent=Os05t0389300-01
Chr05	irgsp1_rep	CDS	18840340	18840463	.	-	2	Parent=Os05t0389300-01
Chr05	irgsp1_rep	CDS	18838800	18838872	.	-	1	Parent=Os05t0389300-01
Chr05	irgsp1_rep	CDS	18838663	18838698	.	-	0	Parent=Os05t0389300-01
Chr05	irgsp1_rep	three_prime_UTR	18838375	18838662	.	-	.	Parent=Os05t0389300-01
Chr05	irgsp1_rep	mRNA	18842751	18845834	.	+	.	ID=Os05t0389400-01;Name=Os05t0389400-01;Locus_id=Os05g0389400;Note=Biopterin transport-related protein BT1 family protein.;Transcript_evidence=AK100484 (DDBJ%2C Best hit);ORF_evidence=B6TI36 (UniProt);InterPro=Biopterin transport-related protein BT1 (IPR004324),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J023097B07;Expression=AK100484;TENOR=Os05t0389400-01;KEGG=Os05t0389400-01
Chr05	irgsp1_rep	five_prime_UTR	18842751	18843068	.	+	.	Parent=Os05t0389400-01
Chr05	irgsp1_rep	CDS	18843069	18843342	.	+	0	Parent=Os05t0389400-01
Chr05	irgsp1_rep	CDS	18844457	18845499	.	+	2	Parent=Os05t0389400-01
Chr05	irgsp1_rep	three_prime_UTR	18845500	18845834	.	+	.	Parent=Os05t0389400-01
Chr05	irgsp1_rep	mRNA	18846080	18849942	.	-	.	ID=Os05t0389500-01;Name=Os05t0389500-01;Locus_id=Os05g0389500;Note=Endonuclease/exonuclease/phosphatase domain containing protein.;Transcript_evidence=AK060960 (DDBJ%2C Best hit),AK104776 (DDBJ%2C Best hit);ORF_evidence=B6T791 (UniProt);InterPro=Endonuclease/exonuclease/phosphatase (IPR005135);NIAS_FLcDNA=006-201-H11,001-039-B12;Expression=AK060960;TENOR=Os05t0389500-01;KEGG=Os05t0389500-01 (EC:3.1.-.-)
Chr05	irgsp1_rep	five_prime_UTR	18849794	18849942	.	-	.	Parent=Os05t0389500-01
Chr05	irgsp1_rep	CDS	18849702	18849793	.	-	0	Parent=Os05t0389500-01
Chr05	irgsp1_rep	CDS	18849541	18849620	.	-	1	Parent=Os05t0389500-01
Chr05	irgsp1_rep	CDS	18849352	18849401	.	-	2	Parent=Os05t0389500-01
Chr05	irgsp1_rep	CDS	18849167	18849216	.	-	0	Parent=Os05t0389500-01
Chr05	irgsp1_rep	CDS	18848605	18848674	.	-	1	Parent=Os05t0389500-01
Chr05	irgsp1_rep	CDS	18847910	18848031	.	-	0	Parent=Os05t0389500-01
Chr05	irgsp1_rep	CDS	18847663	18847772	.	-	1	Parent=Os05t0389500-01
Chr05	irgsp1_rep	CDS	18847134	18847285	.	-	2	Parent=Os05t0389500-01
Chr05	irgsp1_rep	CDS	18846866	18847012	.	-	0	Parent=Os05t0389500-01
Chr05	irgsp1_rep	CDS	18846191	18846487	.	-	0	Parent=Os05t0389500-01
Chr05	irgsp1_rep	three_prime_UTR	18846080	18846190	.	-	.	Parent=Os05t0389500-01
Chr05	irgsp1_rep	mRNA	18845942	18849913	.	-	.	ID=Os05t0389500-02;Name=Os05t0389500-02;Locus_id=Os05g0389500;Note=Endonuclease/exonuclease/phosphatase domain containing protein.;Transcript_evidence=AK098939 (DDBJ%2C Best hit);ORF_evidence=B6T791 (UniProt);InterPro=Endonuclease/exonuclease/phosphatase (IPR005135);NIAS_FLcDNA=J013043C01;Expression=AK098939;TENOR=Os05t0389500-02;KEGG=Os05t0389500-02 (EC:3.1.-.-)
Chr05	irgsp1_rep	five_prime_UTR	18849794	18849913	.	-	.	Parent=Os05t0389500-02
Chr05	irgsp1_rep	CDS	18849702	18849793	.	-	0	Parent=Os05t0389500-02
Chr05	irgsp1_rep	CDS	18849541	18849620	.	-	1	Parent=Os05t0389500-02
Chr05	irgsp1_rep	CDS	18849352	18849401	.	-	2	Parent=Os05t0389500-02
Chr05	irgsp1_rep	CDS	18849167	18849216	.	-	0	Parent=Os05t0389500-02
Chr05	irgsp1_rep	CDS	18848605	18848674	.	-	1	Parent=Os05t0389500-02
Chr05	irgsp1_rep	CDS	18847910	18848031	.	-	0	Parent=Os05t0389500-02
Chr05	irgsp1_rep	CDS	18847663	18847772	.	-	1	Parent=Os05t0389500-02
Chr05	irgsp1_rep	CDS	18847134	18847285	.	-	2	Parent=Os05t0389500-02
Chr05	irgsp1_rep	CDS	18846866	18847012	.	-	0	Parent=Os05t0389500-02
Chr05	irgsp1_rep	CDS	18846191	18846487	.	-	0	Parent=Os05t0389500-02
Chr05	irgsp1_rep	three_prime_UTR	18845942	18846190	.	-	.	Parent=Os05t0389500-02
Chr05	irgsp1_rep	mRNA	18847916	18849900	.	-	.	ID=Os05t0389500-03;Name=Os05t0389500-03;Locus_id=Os05g0389500;Note=Similar to Hydrolase.;Transcript_evidence=AK122043 (DDBJ%2C Best hit);ORF_evidence=B6T791 (UniProt);NIAS_FLcDNA=J033113K20;TENOR=Os05t0389500-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	18849794	18849900	.	-	.	Parent=Os05t0389500-03
Chr05	irgsp1_rep	CDS	18849702	18849793	.	-	0	Parent=Os05t0389500-03
Chr05	irgsp1_rep	CDS	18849541	18849620	.	-	1	Parent=Os05t0389500-03
Chr05	irgsp1_rep	CDS	18849352	18849401	.	-	2	Parent=Os05t0389500-03
Chr05	irgsp1_rep	CDS	18849163	18849216	.	-	0	Parent=Os05t0389500-03
Chr05	irgsp1_rep	three_prime_UTR	18848605	18849162	.	-	.	Parent=Os05t0389500-03
Chr05	irgsp1_rep	three_prime_UTR	18847916	18848031	.	-	.	Parent=Os05t0389500-03
Chr05	irgsp1_rep	mRNA	18862715	18867283	.	+	.	ID=Os05t0389600-01;Name=Os05t0389600-01;Locus_id=Os05g0389600;Oryzabase Gene Symbol Synonym(s)=OsRFP%2C RLIM%2C OsRLIM;Oryzabase Gene Name Synonym(s)=RING finger protein%2C E3 ubiquitin-protein ligase RLIM;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK101529 (DDBJ%2C Best hit);ORF_evidence=B9FI26 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J033047I01;Oryzabase=21156;Expression=AK101529;TENOR=Os05t0389600-01;KEGG=Os05t0389600-01
Chr05	irgsp1_rep	five_prime_UTR	18862715	18862905	.	+	.	Parent=Os05t0389600-01
Chr05	irgsp1_rep	CDS	18862906	18863175	.	+	0	Parent=Os05t0389600-01
Chr05	irgsp1_rep	CDS	18863655	18864497	.	+	0	Parent=Os05t0389600-01
Chr05	irgsp1_rep	CDS	18864571	18864774	.	+	0	Parent=Os05t0389600-01
Chr05	irgsp1_rep	CDS	18864870	18865024	.	+	0	Parent=Os05t0389600-01
Chr05	irgsp1_rep	CDS	18865797	18865907	.	+	1	Parent=Os05t0389600-01
Chr05	irgsp1_rep	CDS	18866824	18866890	.	+	1	Parent=Os05t0389600-01
Chr05	irgsp1_rep	three_prime_UTR	18866891	18867283	.	+	.	Parent=Os05t0389600-01
Chr05	irgsp1_rep	mRNA	18868481	18872164	.	+	.	ID=Os05t0389700-01;Name=Os05t0389700-01;Locus_id=Os05g0389700;CGSNL Gene Symbol=CDKC%3B1;CGSNL Gene Name=CYCLIN-DEPENDENT KINASE C%3B1;Oryzabase Gene Symbol Synonym(s)=CDKC%3B1%2C Orysa%3BCDKC%3B1%2C Orysa%3BCDKC%3B2%2C CDKC%3B2%2C OsCDKC%3B2%2C OsCDKC2;Oryzabase Gene Name Synonym(s)=C-type cyclin-dependent protein kinase 2;Note=Similar to Cell division control protein 2 homolog 2 (EC 2.7.1.37) (Fragment).;Transcript_evidence=AK073808 (DDBJ%2C Best hit);ORF_evidence=Q6I5Y0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033067D07;Oryzabase=13290;Expression=AK073808;TENOR=Os05t0389700-01;KEGG=Os05t0389700-01 (EC:2.7.1.37%2C EC:2.7.11.22)
Chr05	irgsp1_rep	five_prime_UTR	18868481	18868611	.	+	.	Parent=Os05t0389700-01
Chr05	irgsp1_rep	CDS	18868612	18868721	.	+	0	Parent=Os05t0389700-01
Chr05	irgsp1_rep	CDS	18868815	18868896	.	+	1	Parent=Os05t0389700-01
Chr05	irgsp1_rep	CDS	18868995	18869085	.	+	0	Parent=Os05t0389700-01
Chr05	irgsp1_rep	CDS	18869184	18869213	.	+	2	Parent=Os05t0389700-01
Chr05	irgsp1_rep	CDS	18869305	18869417	.	+	2	Parent=Os05t0389700-01
Chr05	irgsp1_rep	CDS	18869515	18869587	.	+	0	Parent=Os05t0389700-01
Chr05	irgsp1_rep	CDS	18869690	18869810	.	+	2	Parent=Os05t0389700-01
Chr05	irgsp1_rep	CDS	18869910	18870027	.	+	1	Parent=Os05t0389700-01
Chr05	irgsp1_rep	CDS	18870854	18870993	.	+	0	Parent=Os05t0389700-01
Chr05	irgsp1_rep	CDS	18871069	18871126	.	+	1	Parent=Os05t0389700-01
Chr05	irgsp1_rep	CDS	18871252	18871322	.	+	0	Parent=Os05t0389700-01
Chr05	irgsp1_rep	CDS	18871426	18871978	.	+	1	Parent=Os05t0389700-01
Chr05	irgsp1_rep	three_prime_UTR	18871979	18872164	.	+	.	Parent=Os05t0389700-01
Chr05	irgsp1_rep	mRNA	18872363	18875789	.	-	.	ID=Os05t0389800-01;Name=Os05t0389800-01;Locus_id=Os05g0389800;Note=Similar to ATP-dependent helicase DHX8 (RNA helicase HRH1) (DEAH-box protein 8).;Transcript_evidence=AK108808 (DDBJ%2C Best hit);ORF_evidence=NP_174527.2 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C ATP-dependent%2C DEAH-box type%2C conserved site (IPR002464),Helicase-associated domain (IPR007502),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),Domain of unknown function DUF1605 (IPR011709),DEAD-like helicase (IPR014001);NIAS_FLcDNA=002-151-D04;Expression=AK108808;TENOR=Os05t0389800-01;KEGG=Os05t0389800-01 (EC:3.6.4.13)
Chr05	irgsp1_rep	five_prime_UTR	18875657	18875789	.	-	.	Parent=Os05t0389800-01
Chr05	irgsp1_rep	CDS	18872444	18875656	.	-	0	Parent=Os05t0389800-01
Chr05	irgsp1_rep	three_prime_UTR	18872363	18872443	.	-	.	Parent=Os05t0389800-01
Chr05	irgsp1_rep	mRNA	18877770	18878429	.	+	.	ID=Os05t0389900-01;Name=Os05t0389900-01;Locus_id=Os05g0389900;Note=Hypothetical gene.;Transcript_evidence=AK073239 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033016A13;Expression=AK073239;TENOR=Os05t0389900-01;KEGG=Os05t0389900-01
Chr05	irgsp1_rep	five_prime_UTR	18877770	18877966	.	+	.	Parent=Os05t0389900-01
Chr05	irgsp1_rep	CDS	18877967	18878188	.	+	0	Parent=Os05t0389900-01
Chr05	irgsp1_rep	three_prime_UTR	18878189	18878429	.	+	.	Parent=Os05t0389900-01
Chr05	irgsp1_rep	mRNA	18880611	18887896	.	-	.	ID=Os05t0390000-01;Name=Os05t0390000-01;Locus_id=Os05g0390000;Note=Similar to predicted protein.;Transcript_evidence=AK289257 (DDBJ%2C Best hit);ORF_evidence=XP_002892359.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921);NIAS_FLcDNA=J100083E20;TENOR=Os05t0390000-01;KEGG=Os05t0390000-01
Chr05	irgsp1_rep	five_prime_UTR	18887838	18887896	.	-	.	Parent=Os05t0390000-01
Chr05	irgsp1_rep	CDS	18886405	18887837	.	-	0	Parent=Os05t0390000-01
Chr05	irgsp1_rep	CDS	18880830	18881130	.	-	1	Parent=Os05t0390000-01
Chr05	irgsp1_rep	three_prime_UTR	18880611	18880829	.	-	.	Parent=Os05t0390000-01
Chr05	irgsp1_rep	mRNA	18892000	18900658	.	+	.	ID=Os05t0390100-01;Name=Os05t0390100-01;Locus_id=Os05g0390100;Note=Dynamin family protein.;Transcript_evidence=AK120123 (DDBJ%2C Best hit);ORF_evidence=NP_171815.3 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=GTP-binding domain%2C HSR1-related (IPR002917);NIAS_FLcDNA=J013026B01;Expression=AK120123;TENOR=Os05t0390100-01;KEGG=Os05t0390100-01
Chr05	irgsp1_rep	five_prime_UTR	18892000	18892114	.	+	.	Parent=Os05t0390100-01
Chr05	irgsp1_rep	CDS	18892115	18892120	.	+	0	Parent=Os05t0390100-01
Chr05	irgsp1_rep	CDS	18892490	18892601	.	+	0	Parent=Os05t0390100-01
Chr05	irgsp1_rep	CDS	18894431	18894996	.	+	2	Parent=Os05t0390100-01
Chr05	irgsp1_rep	CDS	18895121	18895189	.	+	0	Parent=Os05t0390100-01
Chr05	irgsp1_rep	CDS	18896373	18896570	.	+	0	Parent=Os05t0390100-01
Chr05	irgsp1_rep	CDS	18897036	18897167	.	+	0	Parent=Os05t0390100-01
Chr05	irgsp1_rep	CDS	18897903	18897989	.	+	0	Parent=Os05t0390100-01
Chr05	irgsp1_rep	CDS	18898090	18898533	.	+	0	Parent=Os05t0390100-01
Chr05	irgsp1_rep	CDS	18898889	18899056	.	+	0	Parent=Os05t0390100-01
Chr05	irgsp1_rep	CDS	18899374	18899604	.	+	0	Parent=Os05t0390100-01
Chr05	irgsp1_rep	CDS	18900138	18900253	.	+	0	Parent=Os05t0390100-01
Chr05	irgsp1_rep	CDS	18900370	18900652	.	+	1	Parent=Os05t0390100-01
Chr05	irgsp1_rep	three_prime_UTR	18900653	18900658	.	+	.	Parent=Os05t0390100-01
Chr05	irgsp1_rep	mRNA	18919135	18920528	.	+	.	ID=Os05t0390300-00;Name=Os05t0390300-00;Locus_id=Os05g0390300;Note=Conserved hypothetical protein.;Transcript_evidence=FP092761 (DDBJ);ORF_evidence=NP_001174405.1 (RefSeq);TENOR=Os05t0390300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	18919135	18919318	.	+	.	Parent=Os05t0390300-00
Chr05	irgsp1_rep	CDS	18919319	18919570	.	+	0	Parent=Os05t0390300-00
Chr05	irgsp1_rep	CDS	18919657	18919984	.	+	0	Parent=Os05t0390300-00
Chr05	irgsp1_rep	CDS	18920036	18920184	.	+	2	Parent=Os05t0390300-00
Chr05	irgsp1_rep	three_prime_UTR	18920185	18920528	.	+	.	Parent=Os05t0390300-00
Chr05	irgsp1_rep	mRNA	18928206	18933263	.	+	.	ID=Os05t0390500-01;Name=Os05t0390500-01;Locus_id=Os05g0390500;Note=BRCT domain containing protein.;Transcript_evidence=AK067160 (DDBJ%2C Best hit);ORF_evidence=NP_001152445.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Cellular Component: nucleus (GO:0005634),Molecular Function: phosphoprotein phosphatase activity (GO:0004721),Molecular Function: protein binding (GO:0005515);InterPro=BRCT (IPR001357),NLI interacting factor (IPR004274),FCP1-like phosphatase%2C phosphatase domain (IPR011947),HAD-like domain (IPR023214);NIAS_FLcDNA=J013096L04;Expression=AK067160;TENOR=Os05t0390500-01;KEGG=Os05t0390500-01
Chr05	irgsp1_rep	five_prime_UTR	18928206	18928255	.	+	.	Parent=Os05t0390500-01
Chr05	irgsp1_rep	CDS	18928256	18928485	.	+	0	Parent=Os05t0390500-01
Chr05	irgsp1_rep	CDS	18929744	18929817	.	+	1	Parent=Os05t0390500-01
Chr05	irgsp1_rep	CDS	18930217	18930347	.	+	2	Parent=Os05t0390500-01
Chr05	irgsp1_rep	CDS	18930592	18930772	.	+	0	Parent=Os05t0390500-01
Chr05	irgsp1_rep	CDS	18931271	18931560	.	+	2	Parent=Os05t0390500-01
Chr05	irgsp1_rep	CDS	18931828	18932016	.	+	0	Parent=Os05t0390500-01
Chr05	irgsp1_rep	CDS	18932167	18932205	.	+	0	Parent=Os05t0390500-01
Chr05	irgsp1_rep	CDS	18932561	18933037	.	+	0	Parent=Os05t0390500-01
Chr05	irgsp1_rep	three_prime_UTR	18933038	18933263	.	+	.	Parent=Os05t0390500-01
Chr05	irgsp1_rep	mRNA	18941226	18942889	.	+	.	ID=Os05t0390550-00;Name=Os05t0390550-00;Locus_id=Os05g0390550;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0046j21 (Wheat FLcDNA);ORF_evidence=C4J412 (UniProt);TENOR=Os05t0390550-00
Chr05	irgsp1_rep	five_prime_UTR	18941226	18941665	.	+	.	Parent=Os05t0390550-00
Chr05	irgsp1_rep	CDS	18941666	18942124	.	+	0	Parent=Os05t0390550-00
Chr05	irgsp1_rep	three_prime_UTR	18942125	18942889	.	+	.	Parent=Os05t0390550-00
Chr05	irgsp1_rep	mRNA	18941617	18942774	.	-	.	ID=Os05t0390600-00;Name=Os05t0390600-00;Locus_id=Os05g0390600;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001055441.1 (RefSeq);TENOR=Os05t0390600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	18941617	18942774	.	-	0	Parent=Os05t0390600-00
Chr05	irgsp1_rep	mRNA	18958887	18959507	.	-	.	ID=Os05t0390800-00;Name=Os05t0390800-00;Locus_id=Os05g0390800;Oryzabase Gene Symbol Synonym(s)=OsVQ19;Oryzabase Gene Name Synonym(s)=VQ motif-containing protein 19;Note=Similar to VQ motif family protein.;Transcript_evidence=FP093180 (DDBJ);ORF_evidence=NP_001150250.1 (RefSeq);InterPro=VQ (IPR008889);Oryzabase=13635;TENOR=Os05t0390800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	18959394	18959507	.	-	.	Parent=Os05t0390800-00
Chr05	irgsp1_rep	CDS	18958887	18959393	.	-	0	Parent=Os05t0390800-00
Chr05	irgsp1_rep	mRNA	18969257	18970726	.	-	.	ID=Os05t0390932-01;Name=Os05t0390932-01;Locus_id=Os05g0390932;Note=Hypothetical protein.;Transcript_evidence=AK109555 (DDBJ%2C Best hit),AK105218 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-125-C08,001-110-D04;TENOR=Os05t0390932-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	18970726	18970726	.	-	.	Parent=Os05t0390932-01
Chr05	irgsp1_rep	CDS	18970468	18970725	.	-	0	Parent=Os05t0390932-01
Chr05	irgsp1_rep	three_prime_UTR	18969257	18970467	.	-	.	Parent=Os05t0390932-01
Chr05	irgsp1_rep	mRNA	18993759	18996772	.	-	.	ID=Os05t0391200-01;Name=Os05t0391200-01;Locus_id=Os05g0391200;Note=Protein of unknown function DUF288 domain containing protein.;Transcript_evidence=AK059645 (DDBJ%2C Best hit);ORF_evidence=B8AXZ4 (UniProt);InterPro=Protein of unknown function DUF288 (IPR005049);NIAS_FLcDNA=001-031-C01;TENOR=Os05t0391200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	18996771	18996772	.	-	.	Parent=Os05t0391200-01
Chr05	irgsp1_rep	CDS	18996007	18996770	.	-	0	Parent=Os05t0391200-01
Chr05	irgsp1_rep	CDS	18994550	18994676	.	-	1	Parent=Os05t0391200-01
Chr05	irgsp1_rep	CDS	18993994	18994470	.	-	0	Parent=Os05t0391200-01
Chr05	irgsp1_rep	three_prime_UTR	18993759	18993993	.	-	.	Parent=Os05t0391200-01
Chr05	irgsp1_rep	mRNA	18999307	19000135	.	-	.	ID=Os05t0391300-00;Name=Os05t0391300-00;Locus_id=Os05g0391300;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);InterPro=Ribonuclease H1%2C N-terminal (IPR011320);TENOR=Os05t0391300-00
Chr05	irgsp1_rep	five_prime_UTR	19000132	19000135	.	-	.	Parent=Os05t0391300-00
Chr05	irgsp1_rep	CDS	18999307	19000131	.	-	0	Parent=Os05t0391300-00
Chr05	irgsp1_rep	mRNA	19003922	19003983	.	+	.	ID=Os05t0391400-00;Name=Os05t0391400-00;Locus_id=Os05g0391400;Note=Non-protein coding transcript.;Transcript_evidence=EU941912 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0391400-00
Chr05	irgsp1_rep	exon	19003922	19003983	.	+	.	Parent=Os05t0391400-00
Chr05	irgsp1_rep	mRNA	19010877	19019470	.	+	.	ID=Os05t0391500-01;Name=Os05t0391500-01;Locus_id=Os05g0391500;Note=Similar to Endo-beta-mannosidase.;Transcript_evidence=AK119412 (DDBJ%2C Best hit);ORF_evidence=F1BX34 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 2%2C immunoglobulin-like beta-sandwich (IPR006102),Glycoside hydrolase%2C family 2%2C TIM barrel (IPR006103),Glycoside hydrolase%2C family 2%2C N-terminal (IPR006104),Galactose-binding domain-like (IPR008979),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C family 2/20%2C immunoglobulin-like beta-sandwich domain (IPR013812),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 2%2C active site (IPR023232);NIAS_FLcDNA=001-132-F10;Expression=AK119412;TENOR=Os05t0391500-01;KEGG=Os05t0391500-01
Chr05	irgsp1_rep	five_prime_UTR	19010877	19011006	.	+	.	Parent=Os05t0391500-01
Chr05	irgsp1_rep	CDS	19011007	19011194	.	+	0	Parent=Os05t0391500-01
Chr05	irgsp1_rep	CDS	19011452	19011590	.	+	1	Parent=Os05t0391500-01
Chr05	irgsp1_rep	CDS	19012313	19012540	.	+	0	Parent=Os05t0391500-01
Chr05	irgsp1_rep	CDS	19013268	19013326	.	+	0	Parent=Os05t0391500-01
Chr05	irgsp1_rep	CDS	19014484	19014532	.	+	1	Parent=Os05t0391500-01
Chr05	irgsp1_rep	CDS	19014676	19014906	.	+	0	Parent=Os05t0391500-01
Chr05	irgsp1_rep	CDS	19016263	19016432	.	+	0	Parent=Os05t0391500-01
Chr05	irgsp1_rep	CDS	19016519	19016723	.	+	1	Parent=Os05t0391500-01
Chr05	irgsp1_rep	CDS	19017071	19017739	.	+	0	Parent=Os05t0391500-01
Chr05	irgsp1_rep	CDS	19017837	19018064	.	+	0	Parent=Os05t0391500-01
Chr05	irgsp1_rep	CDS	19018146	19018934	.	+	0	Parent=Os05t0391500-01
Chr05	irgsp1_rep	three_prime_UTR	19018935	19019470	.	+	.	Parent=Os05t0391500-01
Chr05	irgsp1_rep	mRNA	19021698	19030826	.	-	.	ID=Os05t0391600-01;Name=Os05t0391600-01;Locus_id=Os05g0391600;Note=Glycosyltransferase AER61%2C uncharacterized domain containing protein.;Transcript_evidence=AK110377 (DDBJ%2C Best hit);ORF_evidence=B6SYB6 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyltransferase AER61%2C uncharacterised (IPR007657);NIAS_FLcDNA=002-165-C08;Oryzabase=15260;Expression=AK110377;TENOR=Os05t0391600-01;KEGG=Os05t0391600-01
Chr05	irgsp1_rep	five_prime_UTR	19030511	19030826	.	-	.	Parent=Os05t0391600-01
Chr05	irgsp1_rep	CDS	19030252	19030510	.	-	0	Parent=Os05t0391600-01
Chr05	irgsp1_rep	CDS	19030007	19030132	.	-	2	Parent=Os05t0391600-01
Chr05	irgsp1_rep	CDS	19029291	19029911	.	-	2	Parent=Os05t0391600-01
Chr05	irgsp1_rep	CDS	19022749	19023469	.	-	2	Parent=Os05t0391600-01
Chr05	irgsp1_rep	CDS	19022238	19022256	.	-	1	Parent=Os05t0391600-01
Chr05	irgsp1_rep	three_prime_UTR	19021698	19022237	.	-	.	Parent=Os05t0391600-01
Chr05	irgsp1_rep	mRNA	19055570	19056235	.	-	.	ID=Os05t0392000-01;Name=Os05t0392000-01;Locus_id=Os05g0392000;Note=Conserved hypothetical protein.;Transcript_evidence=AK060457 (DDBJ%2C Best hit);ORF_evidence=B9FPF5 (UniProt);NIAS_FLcDNA=001-012-A09;TENOR=Os05t0392000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	19056235	19056235	.	-	.	Parent=Os05t0392000-01
Chr05	irgsp1_rep	CDS	19055899	19056234	.	-	0	Parent=Os05t0392000-01
Chr05	irgsp1_rep	three_prime_UTR	19055570	19055898	.	-	.	Parent=Os05t0392000-01
Chr05	irgsp1_rep	mRNA	19066737	19067981	.	-	.	ID=Os05t0392050-00;Name=Os05t0392050-00;Locus_id=Os05g0392050;Note=Hypothetical conserved gene.;Transcript_evidence=EU951836 (DDBJ);ORF_evidence=NP_196857.2 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Zinc finger%2C RING-type (IPR001841),Protein kinase-like domain (IPR011009),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);TENOR=Os05t0392050-00;KEGG=Os05t0392050-00
Chr05	irgsp1_rep	CDS	19066800	19067981	.	-	0	Parent=Os05t0392050-00
Chr05	irgsp1_rep	three_prime_UTR	19066737	19066799	.	-	.	Parent=Os05t0392050-00
Chr05	irgsp1_rep	mRNA	19071452	19078219	.	+	.	ID=Os05t0392100-01;Name=Os05t0392100-01;Locus_id=Os05g0392100;Note=Similar to glycine-rich protein.;Transcript_evidence=AK099734 (DDBJ%2C Best hit);ORF_evidence=NP_001031654.1 (RefSeq);InterPro=RAI1-like (IPR013961);NIAS_FLcDNA=J013090A11;TENOR=Os05t0392100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	19071452	19071546	.	+	.	Parent=Os05t0392100-01
Chr05	irgsp1_rep	CDS	19071547	19071952	.	+	0	Parent=Os05t0392100-01
Chr05	irgsp1_rep	CDS	19072992	19073224	.	+	2	Parent=Os05t0392100-01
Chr05	irgsp1_rep	CDS	19073307	19073372	.	+	0	Parent=Os05t0392100-01
Chr05	irgsp1_rep	CDS	19073507	19073585	.	+	0	Parent=Os05t0392100-01
Chr05	irgsp1_rep	CDS	19074180	19074259	.	+	2	Parent=Os05t0392100-01
Chr05	irgsp1_rep	CDS	19074344	19074367	.	+	0	Parent=Os05t0392100-01
Chr05	irgsp1_rep	CDS	19074499	19074620	.	+	0	Parent=Os05t0392100-01
Chr05	irgsp1_rep	CDS	19075147	19075354	.	+	1	Parent=Os05t0392100-01
Chr05	irgsp1_rep	CDS	19075447	19075500	.	+	0	Parent=Os05t0392100-01
Chr05	irgsp1_rep	CDS	19076205	19076255	.	+	0	Parent=Os05t0392100-01
Chr05	irgsp1_rep	three_prime_UTR	19076256	19077243	.	+	.	Parent=Os05t0392100-01
Chr05	irgsp1_rep	three_prime_UTR	19077537	19077600	.	+	.	Parent=Os05t0392100-01
Chr05	irgsp1_rep	three_prime_UTR	19077733	19078219	.	+	.	Parent=Os05t0392100-01
Chr05	irgsp1_rep	mRNA	19081697	19083061	.	+	.	ID=Os05t0392200-01;Name=Os05t0392200-01;Locus_id=Os05g0392200;Note=Similar to Methylase.;Transcript_evidence=AK063603 (DDBJ%2C Best hit);ORF_evidence=B6U1V3 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Methyltransferase type 11 (IPR013216);NIAS_FLcDNA=001-118-C06;TENOR=Os05t0392200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	19081697	19081697	.	+	.	Parent=Os05t0392200-01
Chr05	irgsp1_rep	CDS	19081698	19081743	.	+	0	Parent=Os05t0392200-01
Chr05	irgsp1_rep	CDS	19081833	19081901	.	+	2	Parent=Os05t0392200-01
Chr05	irgsp1_rep	CDS	19082052	19082071	.	+	2	Parent=Os05t0392200-01
Chr05	irgsp1_rep	CDS	19082177	19082229	.	+	0	Parent=Os05t0392200-01
Chr05	irgsp1_rep	CDS	19082327	19082357	.	+	1	Parent=Os05t0392200-01
Chr05	irgsp1_rep	CDS	19082440	19082521	.	+	0	Parent=Os05t0392200-01
Chr05	irgsp1_rep	CDS	19082750	19082964	.	+	2	Parent=Os05t0392200-01
Chr05	irgsp1_rep	three_prime_UTR	19082965	19083061	.	+	.	Parent=Os05t0392200-01
Chr05	irgsp1_rep	mRNA	19083891	19089905	.	+	.	ID=Os05t0392300-01;Name=Os05t0392300-01;Locus_id=Os05g0392300;CGSNL Gene Symbol=CDKD%3B1;CGSNL Gene Name=CYCLIN-DEPENDENT KINASE D%3B1;Oryzabase Gene Symbol Synonym(s)=CDKD%3B1%2C Orysa%3BCDKD%3B1%2C R2%2C CAK R2%2C CDKD1%3B3;Oryzabase Gene Name Synonym(s)=Cyclin-Dependent Kinase-Activating Kinase R2;Note=Similar to Cyclin-dependent kinase D-1.;Transcript_evidence=AK120162 (DDBJ%2C Best hit);ORF_evidence=P29620 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013031C08;Oryzabase=13293;Expression=AK120162;TENOR=Os05t0392300-01;KEGG=Os05t0392300-01 (EC:2.7.11.22)
Chr05	irgsp1_rep	five_prime_UTR	19083891	19084113	.	+	.	Parent=Os05t0392300-01
Chr05	irgsp1_rep	CDS	19084114	19084233	.	+	0	Parent=Os05t0392300-01
Chr05	irgsp1_rep	CDS	19084959	19085257	.	+	0	Parent=Os05t0392300-01
Chr05	irgsp1_rep	CDS	19085366	19085431	.	+	1	Parent=Os05t0392300-01
Chr05	irgsp1_rep	CDS	19086119	19086244	.	+	1	Parent=Os05t0392300-01
Chr05	irgsp1_rep	CDS	19088460	19088688	.	+	1	Parent=Os05t0392300-01
Chr05	irgsp1_rep	three_prime_UTR	19088689	19088695	.	+	.	Parent=Os05t0392300-01
Chr05	irgsp1_rep	three_prime_UTR	19088788	19089108	.	+	.	Parent=Os05t0392300-01
Chr05	irgsp1_rep	three_prime_UTR	19089268	19089905	.	+	.	Parent=Os05t0392300-01
Chr05	irgsp1_rep	mRNA	19088635	19089858	.	+	.	ID=Os05t0392300-02;Name=Os05t0392300-02;Locus_id=Os05g0392300;CGSNL Gene Symbol=CDKD%3B1;CGSNL Gene Name=CYCLIN-DEPENDENT KINASE D%3B1;Oryzabase Gene Symbol Synonym(s)=CDKD%3B1%2C Orysa%3BCDKD%3B1%2C R2%2C CAK R2%2C CDKD1%3B3;Oryzabase Gene Name Synonym(s)=Cyclin-Dependent Kinase-Activating Kinase R2;Note=Similar to Cyclin-dependent kinase D-1.;Transcript_evidence=AK062401 (DDBJ%2C Best hit);ORF_evidence=P29620 (UniProt);NIAS_FLcDNA=001-102-E03;Oryzabase=13293;Expression=AK062401;TENOR=Os05t0392300-02;KEGG=Os05t0392300-02 (EC:2.7.11.22)
Chr05	irgsp1_rep	five_prime_UTR	19088635	19088636	.	+	.	Parent=Os05t0392300-02
Chr05	irgsp1_rep	CDS	19088637	19088695	.	+	0	Parent=Os05t0392300-02
Chr05	irgsp1_rep	CDS	19088788	19089108	.	+	1	Parent=Os05t0392300-02
Chr05	irgsp1_rep	CDS	19089268	19089331	.	+	1	Parent=Os05t0392300-02
Chr05	irgsp1_rep	three_prime_UTR	19089332	19089858	.	+	.	Parent=Os05t0392300-02
Chr05	irgsp1_rep	mRNA	19097132	19099197	.	+	.	ID=Os05t0392400-01;Name=Os05t0392400-01;Locus_id=Os05g0392400;Oryzabase Gene Name Synonym(s)=Rad54-like;Note=SNF2-related domain containing protein.;Transcript_evidence=AK068327 (DDBJ%2C Best hit);ORF_evidence=A8I429 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524);InterPro=SNF2-related (IPR000330),Helicase%2C C-terminal (IPR001650),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J013136J21;Oryzabase=21309;Expression=AK068327;TENOR=Os05t0392400-01;KEGG=Os05t0392400-01
Chr05	irgsp1_rep	five_prime_UTR	19097132	19097133	.	+	.	Parent=Os05t0392400-01
Chr05	irgsp1_rep	CDS	19097134	19098486	.	+	0	Parent=Os05t0392400-01
Chr05	irgsp1_rep	three_prime_UTR	19098487	19098520	.	+	.	Parent=Os05t0392400-01
Chr05	irgsp1_rep	three_prime_UTR	19098678	19098781	.	+	.	Parent=Os05t0392400-01
Chr05	irgsp1_rep	three_prime_UTR	19098898	19099197	.	+	.	Parent=Os05t0392400-01
Chr05	irgsp1_rep	mRNA	19109005	19112785	.	-	.	ID=Os05t0392700-01;Name=Os05t0392700-01;Locus_id=Os05g0392700;Note=Mitochondrial substrate carrier family protein.;Transcript_evidence=AK058728 (DDBJ%2C Best hit);ORF_evidence=NP_001149024.1 (RefSeq);InterPro=Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=001-019-F07;Expression=AK058728;TENOR=Os05t0392700-01;KEGG=Os05t0392700-01
Chr05	irgsp1_rep	five_prime_UTR	19112487	19112785	.	-	.	Parent=Os05t0392700-01
Chr05	irgsp1_rep	CDS	19112332	19112486	.	-	0	Parent=Os05t0392700-01
Chr05	irgsp1_rep	CDS	19110664	19110895	.	-	1	Parent=Os05t0392700-01
Chr05	irgsp1_rep	CDS	19110427	19110573	.	-	0	Parent=Os05t0392700-01
Chr05	irgsp1_rep	CDS	19109582	19109748	.	-	0	Parent=Os05t0392700-01
Chr05	irgsp1_rep	CDS	19109172	19109463	.	-	1	Parent=Os05t0392700-01
Chr05	irgsp1_rep	three_prime_UTR	19109005	19109171	.	-	.	Parent=Os05t0392700-01
Chr05	irgsp1_rep	mRNA	19108696	19112637	.	-	.	ID=Os05t0392700-03;Name=Os05t0392700-03;Locus_id=Os05g0392700;Note=Mitochondrial substrate carrier family protein.;Transcript_evidence=AK104407 (DDBJ%2C Best hit),AK073425 (DDBJ%2C Best hit);ORF_evidence=NP_001149024.1 (RefSeq);NIAS_FLcDNA=006-203-E01,J033044H10;Expression=AK104407;TENOR=Os05t0392700-03;KEGG=Os05t0392700-03
Chr05	irgsp1_rep	five_prime_UTR	19112487	19112637	.	-	.	Parent=Os05t0392700-03
Chr05	irgsp1_rep	CDS	19112332	19112486	.	-	0	Parent=Os05t0392700-03
Chr05	irgsp1_rep	CDS	19110664	19110895	.	-	1	Parent=Os05t0392700-03
Chr05	irgsp1_rep	CDS	19110427	19110573	.	-	0	Parent=Os05t0392700-03
Chr05	irgsp1_rep	CDS	19109582	19109748	.	-	0	Parent=Os05t0392700-03
Chr05	irgsp1_rep	CDS	19109172	19109463	.	-	1	Parent=Os05t0392700-03
Chr05	irgsp1_rep	three_prime_UTR	19108696	19109171	.	-	.	Parent=Os05t0392700-03
Chr05	irgsp1_rep	mRNA	19114517	19115838	.	+	.	ID=Os05t0392900-01;Name=Os05t0392900-01;Locus_id=Os05g0392900;Note=Conserved hypothetical protein.;Transcript_evidence=AK242647 (DDBJ%2C Best hit);ORF_evidence=Q5Z5C8 (UniProt);NIAS_FLcDNA=J090025K15;TENOR=Os05t0392900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	19114517	19115544	.	+	.	Parent=Os05t0392900-01
Chr05	irgsp1_rep	CDS	19115545	19115637	.	+	0	Parent=Os05t0392900-01
Chr05	irgsp1_rep	three_prime_UTR	19115638	19115838	.	+	.	Parent=Os05t0392900-01
Chr05	irgsp1_rep	mRNA	19118103	19123031	.	+	.	ID=Os05t0393100-01;Name=Os05t0393100-01;Locus_id=Os05g0393100;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=AK073507 (DDBJ%2C Best hit);ORF_evidence=B6U792 (UniProt);InterPro=Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Malectin-like carbohydrate-binding domain (IPR024788);NIAS_FLcDNA=J033046L15;Expression=AK073507;TENOR=Os05t0393100-01;KEGG=Os05t0393100-01
Chr05	irgsp1_rep	five_prime_UTR	19118103	19118217	.	+	.	Parent=Os05t0393100-01
Chr05	irgsp1_rep	CDS	19118218	19118837	.	+	0	Parent=Os05t0393100-01
Chr05	irgsp1_rep	CDS	19119237	19119685	.	+	1	Parent=Os05t0393100-01
Chr05	irgsp1_rep	CDS	19120276	19120411	.	+	2	Parent=Os05t0393100-01
Chr05	irgsp1_rep	CDS	19120497	19120568	.	+	1	Parent=Os05t0393100-01
Chr05	irgsp1_rep	CDS	19120634	19120702	.	+	1	Parent=Os05t0393100-01
Chr05	irgsp1_rep	CDS	19120791	19120862	.	+	1	Parent=Os05t0393100-01
Chr05	irgsp1_rep	CDS	19122437	19122508	.	+	1	Parent=Os05t0393100-01
Chr05	irgsp1_rep	CDS	19122608	19122650	.	+	1	Parent=Os05t0393100-01
Chr05	irgsp1_rep	three_prime_UTR	19122651	19123031	.	+	.	Parent=Os05t0393100-01
Chr05	irgsp1_rep	mRNA	19124235	19128438	.	+	.	ID=Os05t0393200-00;Name=Os05t0393200-00;Locus_id=Os05g0393200;Note=Similar to structural constituent of ribosome.;Transcript_evidence=AK370345 (DDBJ);ORF_evidence=NP_187269.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L34Ae (IPR008195);TENOR=Os05t0393200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	19124235	19124261	.	+	.	Parent=Os05t0393200-00
Chr05	irgsp1_rep	CDS	19124262	19125004	.	+	0	Parent=Os05t0393200-00
Chr05	irgsp1_rep	CDS	19128174	19128213	.	+	1	Parent=Os05t0393200-00
Chr05	irgsp1_rep	three_prime_UTR	19128214	19128438	.	+	.	Parent=Os05t0393200-00
Chr05	irgsp1_rep	mRNA	19130327	19135707	.	+	.	ID=Os05t0393400-01;Name=Os05t0393400-01;Locus_id=Os05g0393400;Note=Similar to PAC (Fragment).;Transcript_evidence=AK059594 (DDBJ%2C Best hit);ORF_evidence=NP_001149942.1 (RefSeq);NIAS_FLcDNA=001-030-D08;Expression=AK059594;TENOR=Os05t0393400-01;KEGG=Os05t0393400-01
Chr05	irgsp1_rep	five_prime_UTR	19130327	19130427	.	+	.	Parent=Os05t0393400-01
Chr05	irgsp1_rep	CDS	19130428	19130575	.	+	0	Parent=Os05t0393400-01
Chr05	irgsp1_rep	CDS	19130679	19130758	.	+	2	Parent=Os05t0393400-01
Chr05	irgsp1_rep	CDS	19131482	19131676	.	+	0	Parent=Os05t0393400-01
Chr05	irgsp1_rep	CDS	19133392	19133478	.	+	0	Parent=Os05t0393400-01
Chr05	irgsp1_rep	CDS	19134256	19134306	.	+	0	Parent=Os05t0393400-01
Chr05	irgsp1_rep	CDS	19134456	19134635	.	+	0	Parent=Os05t0393400-01
Chr05	irgsp1_rep	CDS	19135108	19135341	.	+	0	Parent=Os05t0393400-01
Chr05	irgsp1_rep	three_prime_UTR	19135342	19135707	.	+	.	Parent=Os05t0393400-01
Chr05	irgsp1_rep	mRNA	19130370	19135840	.	+	.	ID=Os05t0393400-02;Name=Os05t0393400-02;Locus_id=Os05g0393400;Note=Similar to PAC (Fragment).;Transcript_evidence=AK099875 (DDBJ%2C Best hit);ORF_evidence=NP_001149942.1 (RefSeq);NIAS_FLcDNA=J013111H01;Expression=AK099875;TENOR=Os05t0393400-02;KEGG=Os05t0393400-02
Chr05	irgsp1_rep	five_prime_UTR	19130370	19130427	.	+	.	Parent=Os05t0393400-02
Chr05	irgsp1_rep	CDS	19130428	19130575	.	+	0	Parent=Os05t0393400-02
Chr05	irgsp1_rep	CDS	19130679	19130758	.	+	2	Parent=Os05t0393400-02
Chr05	irgsp1_rep	CDS	19131482	19131676	.	+	0	Parent=Os05t0393400-02
Chr05	irgsp1_rep	CDS	19133392	19133478	.	+	0	Parent=Os05t0393400-02
Chr05	irgsp1_rep	CDS	19134256	19134306	.	+	0	Parent=Os05t0393400-02
Chr05	irgsp1_rep	CDS	19134456	19134635	.	+	0	Parent=Os05t0393400-02
Chr05	irgsp1_rep	CDS	19135108	19135341	.	+	0	Parent=Os05t0393400-02
Chr05	irgsp1_rep	three_prime_UTR	19135342	19135840	.	+	.	Parent=Os05t0393400-02
Chr05	irgsp1_rep	mRNA	19130393	19135940	.	+	.	ID=Os05t0393400-03;Name=Os05t0393400-03;Locus_id=Os05g0393400;Note=Similar to PAC (Fragment).;Transcript_evidence=AK100039 (DDBJ%2C Best hit);ORF_evidence=NP_001149942.1 (RefSeq);NIAS_FLcDNA=J013151D13;Expression=AK100039;TENOR=Os05t0393400-03;KEGG=Os05t0393400-03
Chr05	irgsp1_rep	five_prime_UTR	19130393	19130427	.	+	.	Parent=Os05t0393400-03
Chr05	irgsp1_rep	CDS	19130428	19130575	.	+	0	Parent=Os05t0393400-03
Chr05	irgsp1_rep	CDS	19130679	19130758	.	+	2	Parent=Os05t0393400-03
Chr05	irgsp1_rep	CDS	19131482	19131676	.	+	0	Parent=Os05t0393400-03
Chr05	irgsp1_rep	CDS	19133392	19133478	.	+	0	Parent=Os05t0393400-03
Chr05	irgsp1_rep	CDS	19134256	19134306	.	+	0	Parent=Os05t0393400-03
Chr05	irgsp1_rep	CDS	19134456	19134635	.	+	0	Parent=Os05t0393400-03
Chr05	irgsp1_rep	CDS	19135108	19135341	.	+	0	Parent=Os05t0393400-03
Chr05	irgsp1_rep	three_prime_UTR	19135342	19135940	.	+	.	Parent=Os05t0393400-03
Chr05	irgsp1_rep	mRNA	19155053	19157600	.	-	.	ID=Os05t0393700-01;Name=Os05t0393700-01;Locus_id=Os05g0393700;RAP-DB Gene Symbol Synonym(s)=OsISA2%2C ISA2;RAP-DB Gene Name Synonym(s)=isoamylase 2;CGSNL Gene Symbol=ISA2;CGSNL Gene Name=ISOAMYLASE 2;Oryzabase Gene Symbol Synonym(s)=OsISA2%2C ISA II%2C OsISA II;Oryzabase Gene Name Synonym(s)=isoamylase-2%2C isoamylase 2;Note=Starch-debranching enzyme%2C Isoamylase%2C Starch biosynthesis as the ISA1-ISA2 hetero-oligomer in leaf;Transcript_evidence=AK288307 (truncated),Q6AU80 (UniProt);ORF_evidence=Q6AU80;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Immunoglobulin-like fold (IPR013783),Immunoglobulin E-set (IPR014756),Glycoside hydrolase superfamily (IPR017853),Glycosyl hydrolase%2C all-beta (IPR013780),Glycoside hydrolase%2C family 13%2C N-terminal (IPR004193),Glycosyl hydrolase%2C family 13%2C catalytic domain (IPR006047);NIAS_FLcDNA=J090020G01 (truncated);Manual Curation=September 14%2C 2020;Literature_PMID=21436381;Oryzabase=6179;TENOR=Os05t0393700-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	19155198	19157600	.	-	0	Parent=Os05t0393700-01
Chr05	irgsp1_rep	three_prime_UTR	19155053	19155197	.	-	.	Parent=Os05t0393700-01
Chr05	irgsp1_rep	mRNA	19160140	19166101	.	+	.	ID=Os05t0393800-01;Name=Os05t0393800-01;Locus_id=Os05g0393800;CGSNL Gene Symbol=OSCA1.3;CGSNL Gene Name=HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 1.3;Oryzabase Gene Symbol Synonym(s)=OsSTA149%2C OsOSCA1.3%2C OsIOSCA1.3%2C OsDDP5%2C DDP5%2C OsDDP5.1;Oryzabase Gene Name Synonym(s)=Hyperosmolality-gated calcium-permeable channel 1.3%2C DUF221 Domain containing Protein 5;Note=Protein of unknown function DUF221 domain containing protein.;Transcript_evidence=AK069074 (DDBJ%2C Best hit);ORF_evidence=NP_192199.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Domain of unknown function DUF221 (IPR003864);NIAS_FLcDNA=J023005F15;Oryzabase=19437;Expression=AK069074;TENOR=Os05t0393800-01;KEGG=Os05t0393800-01
Chr05	irgsp1_rep	five_prime_UTR	19160140	19160364	.	+	.	Parent=Os05t0393800-01
Chr05	irgsp1_rep	five_prime_UTR	19160714	19160791	.	+	.	Parent=Os05t0393800-01
Chr05	irgsp1_rep	CDS	19160792	19161105	.	+	0	Parent=Os05t0393800-01
Chr05	irgsp1_rep	CDS	19161265	19161414	.	+	1	Parent=Os05t0393800-01
Chr05	irgsp1_rep	CDS	19162191	19162326	.	+	1	Parent=Os05t0393800-01
Chr05	irgsp1_rep	CDS	19162467	19162568	.	+	0	Parent=Os05t0393800-01
Chr05	irgsp1_rep	CDS	19162801	19162920	.	+	0	Parent=Os05t0393800-01
Chr05	irgsp1_rep	CDS	19163045	19163125	.	+	0	Parent=Os05t0393800-01
Chr05	irgsp1_rep	CDS	19163286	19163626	.	+	0	Parent=Os05t0393800-01
Chr05	irgsp1_rep	CDS	19164541	19164786	.	+	1	Parent=Os05t0393800-01
Chr05	irgsp1_rep	CDS	19164946	19165270	.	+	1	Parent=Os05t0393800-01
Chr05	irgsp1_rep	CDS	19165412	19165645	.	+	0	Parent=Os05t0393800-01
Chr05	irgsp1_rep	CDS	19165751	19166005	.	+	0	Parent=Os05t0393800-01
Chr05	irgsp1_rep	three_prime_UTR	19166006	19166101	.	+	.	Parent=Os05t0393800-01
Chr05	irgsp1_rep	mRNA	19160739	19164688	.	-	.	ID=Os05t0393850-00;Name=Os05t0393850-00;Locus_id=Os05g0393850;Note=Hypothetical protein.;Transcript_evidence=AK376405 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0393850-00
Chr05	irgsp1_rep	five_prime_UTR	19164539	19164688	.	-	.	Parent=Os05t0393850-00
Chr05	irgsp1_rep	five_prime_UTR	19163263	19163624	.	-	.	Parent=Os05t0393850-00
Chr05	irgsp1_rep	five_prime_UTR	19163034	19163099	.	-	.	Parent=Os05t0393850-00
Chr05	irgsp1_rep	five_prime_UTR	19162888	19162912	.	-	.	Parent=Os05t0393850-00
Chr05	irgsp1_rep	CDS	19162795	19162887	.	-	0	Parent=Os05t0393850-00
Chr05	irgsp1_rep	CDS	19162466	19162556	.	-	0	Parent=Os05t0393850-00
Chr05	irgsp1_rep	CDS	19162204	19162325	.	-	2	Parent=Os05t0393850-00
Chr05	irgsp1_rep	CDS	19161367	19161429	.	-	0	Parent=Os05t0393850-00
Chr05	irgsp1_rep	three_prime_UTR	19161264	19161366	.	-	.	Parent=Os05t0393850-00
Chr05	irgsp1_rep	three_prime_UTR	19160739	19161104	.	-	.	Parent=Os05t0393850-00
Chr05	irgsp1_rep	mRNA	19166560	19168329	.	-	.	ID=Os05t0393900-00;Name=Os05t0393900-00;Locus_id=Os05g0393900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=tplb0053i11 (Wheat FLcDNA);ORF_evidence=NP_001174412.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os05t0393900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	19168236	19168329	.	-	.	Parent=Os05t0393900-00
Chr05	irgsp1_rep	CDS	19166574	19168235	.	-	0	Parent=Os05t0393900-00
Chr05	irgsp1_rep	three_prime_UTR	19166560	19166573	.	-	.	Parent=Os05t0393900-00
Chr05	irgsp1_rep	mRNA	19178379	19183276	.	+	.	ID=Os05t0394200-01;Name=Os05t0394200-01;Locus_id=Os05g0394200;Note=Hypothetical conserved gene.;Transcript_evidence=AK241040 (DDBJ%2C Best hit);ORF_evidence=B9FPG3 (UniProt);InterPro=Domain of unknown function DUF632 (IPR006867);NIAS_FLcDNA=J065059N08;TENOR=Os05t0394200-01;KEGG=Os05t0394200-01
Chr05	irgsp1_rep	five_prime_UTR	19178379	19178503	.	+	.	Parent=Os05t0394200-01
Chr05	irgsp1_rep	CDS	19178504	19178517	.	+	0	Parent=Os05t0394200-01
Chr05	irgsp1_rep	CDS	19178923	19179707	.	+	1	Parent=Os05t0394200-01
Chr05	irgsp1_rep	CDS	19181115	19181290	.	+	2	Parent=Os05t0394200-01
Chr05	irgsp1_rep	CDS	19181997	19182220	.	+	0	Parent=Os05t0394200-01
Chr05	irgsp1_rep	CDS	19182378	19183170	.	+	1	Parent=Os05t0394200-01
Chr05	irgsp1_rep	three_prime_UTR	19183171	19183276	.	+	.	Parent=Os05t0394200-01
Chr05	irgsp1_rep	mRNA	19178614	19181214	.	-	.	ID=Os05t0394301-00;Name=Os05t0394301-00;Locus_id=Os05g0394301;Note=Hypothetical gene.;Transcript_evidence=BT083552 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0394301-00
Chr05	irgsp1_rep	five_prime_UTR	19181113	19181214	.	-	.	Parent=Os05t0394301-00
Chr05	irgsp1_rep	five_prime_UTR	19179476	19179705	.	-	.	Parent=Os05t0394301-00
Chr05	irgsp1_rep	CDS	19178761	19179475	.	-	0	Parent=Os05t0394301-00
Chr05	irgsp1_rep	CDS	19178614	19178704	.	-	2	Parent=Os05t0394301-00
Chr05	irgsp1_rep	mRNA	19217268	19218684	.	-	.	ID=Os05t0394900-01;Name=Os05t0394900-01;Locus_id=Os05g0394900;Note=Conserved hypothetical protein.;Transcript_evidence=AK058958 (DDBJ%2C Best hit);ORF_evidence=B9FPG4 (UniProt);NIAS_FLcDNA=001-020-B07;Expression=AK058958;TENOR=Os05t0394900-01;KEGG=Os05t0394900-01
Chr05	irgsp1_rep	five_prime_UTR	19218683	19218684	.	-	.	Parent=Os05t0394900-01
Chr05	irgsp1_rep	CDS	19218503	19218682	.	-	0	Parent=Os05t0394900-01
Chr05	irgsp1_rep	CDS	19218362	19218408	.	-	0	Parent=Os05t0394900-01
Chr05	irgsp1_rep	CDS	19217392	19218286	.	-	1	Parent=Os05t0394900-01
Chr05	irgsp1_rep	three_prime_UTR	19217268	19217391	.	-	.	Parent=Os05t0394900-01
Chr05	irgsp1_rep	mRNA	19222178	19224327	.	-	.	ID=Os05t0395000-01;Name=Os05t0395000-01;Locus_id=Os05g0395000;Note=Virulence factor%2C pectin lyase fold family protein.;Transcript_evidence=AK072019 (DDBJ%2C Best hit),AK105661 (DDBJ%2C Best hit);ORF_evidence=B8AY06 (UniProt);InterPro=Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A (IPR021102);NIAS_FLcDNA=J013105M15,001-200-H03;Expression=AK072019;TENOR=Os05t0395000-01;KEGG=Os05t0395000-01
Chr05	irgsp1_rep	five_prime_UTR	19224269	19224327	.	-	.	Parent=Os05t0395000-01
Chr05	irgsp1_rep	CDS	19222430	19224268	.	-	0	Parent=Os05t0395000-01
Chr05	irgsp1_rep	three_prime_UTR	19222178	19222429	.	-	.	Parent=Os05t0395000-01
Chr05	irgsp1_rep	mRNA	19222117	19224289	.	-	.	ID=Os05t0395000-03;Name=Os05t0395000-03;Locus_id=Os05g0395000;Note=Virulence factor%2C pectin lyase fold family protein.;Transcript_evidence=AK101858 (DDBJ%2C Best hit);ORF_evidence=B8AY06 (UniProt);InterPro=Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A (IPR021102);NIAS_FLcDNA=J033069P13;Expression=AK101858;TENOR=Os05t0395000-03;KEGG=Os05t0395000-03
Chr05	irgsp1_rep	five_prime_UTR	19224269	19224289	.	-	.	Parent=Os05t0395000-03
Chr05	irgsp1_rep	CDS	19222430	19224268	.	-	0	Parent=Os05t0395000-03
Chr05	irgsp1_rep	three_prime_UTR	19222117	19222429	.	-	.	Parent=Os05t0395000-03
Chr05	irgsp1_rep	mRNA	19223908	19224503	.	+	.	ID=Os05t0395025-01;Name=Os05t0395025-01;Locus_id=Os05g0395025;Note=Non-protein coding transcript.;Transcript_evidence=AK289084 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090095H18;TENOR=Os05t0395025-01
Chr05	irgsp1_rep	exon	19223908	19224503	.	+	.	Parent=Os05t0395025-01
Chr05	irgsp1_rep	mRNA	19226611	19231602	.	-	.	ID=Os05t0395116-00;Name=Os05t0395116-00;Locus_id=Os05g0395116;Note=Similar to dehydration-responsive protein-related.;Transcript_evidence=AK374577 (DDBJ);ORF_evidence=NP_190676.1 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Protein of unknown function DUF248%2C methyltransferase putative (IPR004159);TENOR=Os05t0395116-00
Chr05	irgsp1_rep	five_prime_UTR	19231347	19231602	.	-	.	Parent=Os05t0395116-00
Chr05	irgsp1_rep	CDS	19231006	19231346	.	-	0	Parent=Os05t0395116-00
Chr05	irgsp1_rep	CDS	19226697	19227243	.	-	1	Parent=Os05t0395116-00
Chr05	irgsp1_rep	three_prime_UTR	19226611	19226696	.	-	.	Parent=Os05t0395116-00
Chr05	irgsp1_rep	mRNA	19232834	19240386	.	+	.	ID=Os05t0395300-01;Name=Os05t0395300-01;Locus_id=Os05g0395300;CGSNL Gene Symbol=DPS1;CGSNL Gene Name=DEGENERATED PANICLE AND PARTIAL STERILITY 1;Oryzabase Gene Symbol Synonym(s)=OsCBSDUF1%2C OsCBSDUF1a%2C OsCBSDUF1b%2C CBSDUF1%2C CBSDUF1a%2C CBSDUF1b;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSDUF1%2C CBS domain containing protein OsCBSDUF1;Note=Cystathionine beta-synthase%2C core domain containing protein.;Transcript_evidence=AK066212 (DDBJ%2C Best hit);ORF_evidence=NP_193159.3 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Cystathionine beta-synthase%2C core (IPR000644),Domain of unknown function DUF21 (IPR002550);NIAS_FLcDNA=J013058D20;Oryzabase=10342;Expression=AK066212;TENOR=Os05t0395300-01;KEGG=Os05t0395300-01
Chr05	irgsp1_rep	five_prime_UTR	19232834	19232900	.	+	.	Parent=Os05t0395300-01
Chr05	irgsp1_rep	CDS	19232901	19232926	.	+	0	Parent=Os05t0395300-01
Chr05	irgsp1_rep	CDS	19233011	19233210	.	+	1	Parent=Os05t0395300-01
Chr05	irgsp1_rep	CDS	19234156	19234232	.	+	2	Parent=Os05t0395300-01
Chr05	irgsp1_rep	CDS	19235209	19235292	.	+	0	Parent=Os05t0395300-01
Chr05	irgsp1_rep	CDS	19235375	19235488	.	+	0	Parent=Os05t0395300-01
Chr05	irgsp1_rep	CDS	19236106	19236192	.	+	0	Parent=Os05t0395300-01
Chr05	irgsp1_rep	CDS	19236281	19236352	.	+	0	Parent=Os05t0395300-01
Chr05	irgsp1_rep	CDS	19236888	19236955	.	+	0	Parent=Os05t0395300-01
Chr05	irgsp1_rep	CDS	19237289	19237376	.	+	1	Parent=Os05t0395300-01
Chr05	irgsp1_rep	CDS	19237470	19237543	.	+	0	Parent=Os05t0395300-01
Chr05	irgsp1_rep	CDS	19237699	19238062	.	+	1	Parent=Os05t0395300-01
Chr05	irgsp1_rep	CDS	19238269	19238315	.	+	0	Parent=Os05t0395300-01
Chr05	irgsp1_rep	CDS	19238399	19238480	.	+	1	Parent=Os05t0395300-01
Chr05	irgsp1_rep	CDS	19239943	19240062	.	+	0	Parent=Os05t0395300-01
Chr05	irgsp1_rep	three_prime_UTR	19240063	19240386	.	+	.	Parent=Os05t0395300-01
Chr05	irgsp1_rep	mRNA	19232846	19240430	.	+	.	ID=Os05t0395300-02;Name=Os05t0395300-02;Locus_id=Os05g0395300;RAP-DB Gene Symbol Synonym(s)=DPS1%2C OsCBSDUF1;RAP-DB Gene Name Synonym(s)=degenerated panicle and partial sterility 1;CGSNL Gene Symbol=DPS1;CGSNL Gene Name=DEGENERATED PANICLE AND PARTIAL STERILITY 1;Oryzabase Gene Symbol Synonym(s)=OsCBSDUF1%2C OsCBSDUF1a%2C OsCBSDUF1b%2C CBSDUF1%2C CBSDUF1a%2C CBSDUF1b;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSDUF1%2C CBS domain containing protein OsCBSDUF1;Note=Cystathionine &beta%3B-synthase (CBS) domain containing protein%2C "Regulation of ROS homeostasis%2C anther cuticle formation and panicle development";Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;InterPro=CNNM%2C transmembrane domain (IPR002550),CBS domain (IPR000644);Manual Curation=August 29%2C 2019;Literature_PMID=31433495;Oryzabase=10342;Subcellular location=mitochondrion (GO:0005739)
Chr05	irgsp1_rep	five_prime_UTR	19232846	19232900	.	+	.	Parent=Os05t0395300-02
Chr05	irgsp1_rep	CDS	19232901	19233210	.	+	0	Parent=Os05t0395300-02
Chr05	irgsp1_rep	CDS	19234156	19234232	.	+	2	Parent=Os05t0395300-02
Chr05	irgsp1_rep	CDS	19235209	19235292	.	+	0	Parent=Os05t0395300-02
Chr05	irgsp1_rep	CDS	19235375	19235488	.	+	0	Parent=Os05t0395300-02
Chr05	irgsp1_rep	CDS	19236106	19236192	.	+	0	Parent=Os05t0395300-02
Chr05	irgsp1_rep	CDS	19236281	19236352	.	+	0	Parent=Os05t0395300-02
Chr05	irgsp1_rep	CDS	19236888	19236955	.	+	0	Parent=Os05t0395300-02
Chr05	irgsp1_rep	CDS	19237289	19237376	.	+	1	Parent=Os05t0395300-02
Chr05	irgsp1_rep	CDS	19237470	19237543	.	+	0	Parent=Os05t0395300-02
Chr05	irgsp1_rep	CDS	19237699	19238062	.	+	1	Parent=Os05t0395300-02
Chr05	irgsp1_rep	CDS	19238269	19238315	.	+	0	Parent=Os05t0395300-02
Chr05	irgsp1_rep	CDS	19238399	19238480	.	+	1	Parent=Os05t0395300-02
Chr05	irgsp1_rep	CDS	19239943	19240062	.	+	0	Parent=Os05t0395300-02
Chr05	irgsp1_rep	three_prime_UTR	19240063	19240430	.	+	.	Parent=Os05t0395300-02
Chr05	irgsp1_rep	mRNA	19240768	19241359	.	+	.	ID=Os05t0395400-00;Name=Os05t0395400-00;Locus_id=Os05g0395400;Note=Hypothetical protein.;Transcript_evidence=CT836389 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os05t0395400-00;KEGG=Os05t0395400-00
Chr05	irgsp1_rep	five_prime_UTR	19240768	19240941	.	+	.	Parent=Os05t0395400-00
Chr05	irgsp1_rep	CDS	19240942	19241250	.	+	0	Parent=Os05t0395400-00
Chr05	irgsp1_rep	three_prime_UTR	19241251	19241359	.	+	.	Parent=Os05t0395400-00
Chr05	irgsp1_rep	mRNA	19255491	19260019	.	-	.	ID=Os05t0395600-01;Name=Os05t0395600-01;Locus_id=Os05g0395600;CGSNL Gene Symbol=RR27;CGSNL Gene Name=B-TYPE RESPONSE REGULATOR 27;Oryzabase Gene Symbol Synonym(s)=OsRR27%2C Rra16%2C OsPRR5%2C OsRRA16;Oryzabase Gene Name Synonym(s)=A-type RR 16%2C response regulator 27;Note=Hypothetical conserved gene.;Transcript_evidence=AK242722 (DDBJ%2C Best hit);ORF_evidence=B9FIB4 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: two-component response regulator activity (GO:0000156),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),CheY-like superfamily (IPR011006),Homeodomain-related (IPR012287);NIAS_FLcDNA=J090045F10;Oryzabase=9830;TENOR=Os05t0395600-01;KEGG=Os05t0395600-01
Chr05	irgsp1_rep	five_prime_UTR	19259889	19260019	.	-	.	Parent=Os05t0395600-01
Chr05	irgsp1_rep	CDS	19259744	19259888	.	-	0	Parent=Os05t0395600-01
Chr05	irgsp1_rep	CDS	19258850	19258999	.	-	2	Parent=Os05t0395600-01
Chr05	irgsp1_rep	CDS	19258088	19258657	.	-	2	Parent=Os05t0395600-01
Chr05	irgsp1_rep	CDS	19256919	19256995	.	-	2	Parent=Os05t0395600-01
Chr05	irgsp1_rep	CDS	19255738	19256658	.	-	0	Parent=Os05t0395600-01
Chr05	irgsp1_rep	three_prime_UTR	19255491	19255737	.	-	.	Parent=Os05t0395600-01
Chr05	irgsp1_rep	mRNA	19281578	19283505	.	-	.	ID=Os05t0395850-00;Name=Os05t0395850-00;Locus_id=Os05g0395850;Note=Hypothetical protein.;Transcript_evidence=tplb0053a05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0395850-00
Chr05	irgsp1_rep	five_prime_UTR	19283202	19283505	.	-	.	Parent=Os05t0395850-00
Chr05	irgsp1_rep	CDS	19283160	19283201	.	-	0	Parent=Os05t0395850-00
Chr05	irgsp1_rep	CDS	19282922	19283051	.	-	0	Parent=Os05t0395850-00
Chr05	irgsp1_rep	CDS	19281890	19281969	.	-	2	Parent=Os05t0395850-00
Chr05	irgsp1_rep	three_prime_UTR	19281578	19281889	.	-	.	Parent=Os05t0395850-00
Chr05	irgsp1_rep	mRNA	19281673	19283577	.	+	.	ID=Os05t0396000-00;Name=Os05t0396000-00;Locus_id=Os05g0396000;Note=Similar to Hexose carrier.;Transcript_evidence=BT040144 (DDBJ);ORF_evidence=Q2R1T1 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transmembrane transporter activity (GO:0022857);InterPro=General substrate transporter (IPR005828);TENOR=Os05t0396000-00;KEGG=Os05t0396000-00
Chr05	irgsp1_rep	five_prime_UTR	19281673	19281856	.	+	.	Parent=Os05t0396000-00
Chr05	irgsp1_rep	CDS	19281857	19281961	.	+	0	Parent=Os05t0396000-00
Chr05	irgsp1_rep	CDS	19282923	19283042	.	+	0	Parent=Os05t0396000-00
Chr05	irgsp1_rep	CDS	19283150	19283290	.	+	0	Parent=Os05t0396000-00
Chr05	irgsp1_rep	three_prime_UTR	19283291	19283577	.	+	.	Parent=Os05t0396000-00
Chr05	irgsp1_rep	mRNA	19306887	19307493	.	+	.	ID=Os05t0396700-01;Name=Os05t0396700-01;Locus_id=Os05g0396700;Note=Conserved hypothetical protein.;Transcript_evidence=AK062313 (DDBJ%2C Best hit);ORF_evidence=Q75HV9 (UniProt);NIAS_FLcDNA=001-101-B10;Expression=AK062313;TENOR=Os05t0396700-01;KEGG=Os05t0396700-01
Chr05	irgsp1_rep	five_prime_UTR	19306887	19306887	.	+	.	Parent=Os05t0396700-01
Chr05	irgsp1_rep	CDS	19306888	19307493	.	+	0	Parent=Os05t0396700-01
Chr05	irgsp1_rep	mRNA	19311394	19313597	.	-	.	ID=Os05t0396900-01;Name=Os05t0396900-01;Locus_id=Os05g0396900;Note=Conserved hypothetical protein.;Transcript_evidence=AK069649 (DDBJ%2C Best hit),AK100181 (DDBJ%2C Best hit);ORF_evidence=NP_001146060.1 (RefSeq);NIAS_FLcDNA=J023030B11,J023030B10;Expression=AK069649;TENOR=Os05t0396900-01;KEGG=Os05t0396900-01
Chr05	irgsp1_rep	five_prime_UTR	19313536	19313597	.	-	.	Parent=Os05t0396900-01
Chr05	irgsp1_rep	CDS	19311730	19313535	.	-	0	Parent=Os05t0396900-01
Chr05	irgsp1_rep	three_prime_UTR	19311394	19311729	.	-	.	Parent=Os05t0396900-01
Chr05	irgsp1_rep	mRNA	19325595	19326042	.	+	.	ID=Os05t0397100-00;Name=Os05t0397100-00;Locus_id=Os05g0397100;Note=Hypothetical protein.;Transcript_evidence=BT086098 (DDBJ);ORF_evidence=GeneMark;TENOR=Os05t0397100-00
Chr05	irgsp1_rep	CDS	19325595	19326042	.	+	0	Parent=Os05t0397100-00
Chr05	irgsp1_rep	mRNA	19327470	19331484	.	-	.	ID=Os05t0397300-02;Name=Os05t0397300-02;Locus_id=Os05g0397300;Note=Conserved hypothetical protein.;Transcript_evidence=AK070832 (DDBJ%2C Best hit),AK062621 (DDBJ%2C Best hit);ORF_evidence=A2Y4E2 (UniProt);NIAS_FLcDNA=J023066C05,001-105-B09;Expression=AK070832;TENOR=Os05t0397300-02;KEGG=Os05t0397300-02
Chr05	irgsp1_rep	five_prime_UTR	19331328	19331484	.	-	.	Parent=Os05t0397300-02
Chr05	irgsp1_rep	CDS	19331190	19331327	.	-	0	Parent=Os05t0397300-02
Chr05	irgsp1_rep	CDS	19327972	19328277	.	-	0	Parent=Os05t0397300-02
Chr05	irgsp1_rep	three_prime_UTR	19327470	19327971	.	-	.	Parent=Os05t0397300-02
Chr05	irgsp1_rep	mRNA	19329207	19331484	.	-	.	ID=Os05t0397300-03;Name=Os05t0397300-03;Locus_id=Os05g0397300;Note=Hypothetical conserved gene.;Transcript_evidence=AK066003 (DDBJ%2C Best hit);ORF_evidence=A2Y4E2 (UniProt);NIAS_FLcDNA=J013043E21;Expression=AK066003;TENOR=Os05t0397300-03;KEGG=Os05t0397300-03
Chr05	irgsp1_rep	five_prime_UTR	19331328	19331484	.	-	.	Parent=Os05t0397300-03
Chr05	irgsp1_rep	CDS	19330944	19331327	.	-	0	Parent=Os05t0397300-03
Chr05	irgsp1_rep	three_prime_UTR	19329207	19330943	.	-	.	Parent=Os05t0397300-03
Chr05	irgsp1_rep	mRNA	19336642	19337554	.	+	.	ID=Os05t0397600-01;Name=Os05t0397600-01;Locus_id=Os05g0397600;Note=Hypothetical gene.;Transcript_evidence=AK068141 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013135A04;Expression=AK068141;TENOR=Os05t0397600-01;KEGG=Os05t0397600-01
Chr05	irgsp1_rep	five_prime_UTR	19336642	19336643	.	+	.	Parent=Os05t0397600-01
Chr05	irgsp1_rep	CDS	19336644	19337093	.	+	0	Parent=Os05t0397600-01
Chr05	irgsp1_rep	three_prime_UTR	19337094	19337115	.	+	.	Parent=Os05t0397600-01
Chr05	irgsp1_rep	three_prime_UTR	19337390	19337554	.	+	.	Parent=Os05t0397600-01
Chr05	irgsp1_rep	mRNA	19340923	19345332	.	-	.	ID=Os05t0397650-00;Name=Os05t0397650-00;Locus_id=Os05g0397650;Oryzabase Gene Symbol Synonym(s)=OsRFPHC-8;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPHC-8%2C RING-HC protein 8;Note=Similar to zinc finger (C3HC4-type RING finger) family protein.;Transcript_evidence=AK365990 (DDBJ);ORF_evidence=NP_197409.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);Oryzabase=11791;TENOR=Os05t0397650-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	19345187	19345332	.	-	.	Parent=Os05t0397650-00
Chr05	irgsp1_rep	CDS	19344723	19345186	.	-	0	Parent=Os05t0397650-00
Chr05	irgsp1_rep	CDS	19343192	19343681	.	-	1	Parent=Os05t0397650-00
Chr05	irgsp1_rep	CDS	19342967	19343080	.	-	0	Parent=Os05t0397650-00
Chr05	irgsp1_rep	three_prime_UTR	19342953	19342966	.	-	.	Parent=Os05t0397650-00
Chr05	irgsp1_rep	three_prime_UTR	19340923	19341122	.	-	.	Parent=Os05t0397650-00
Chr05	irgsp1_rep	mRNA	19346175	19353385	.	-	.	ID=Os05t0397700-01;Name=Os05t0397700-01;Locus_id=Os05g0397700;Note=SecY protein family protein.;Transcript_evidence=AK067298 (DDBJ%2C Best hit);ORF_evidence=NP_001152011.1 (RefSeq);GO=Biological Process: protein transport (GO:0015031),Cellular Component: membrane (GO:0016020),Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450);InterPro=SecY protein (IPR002208),SecY subunit domain (IPR023201);NIAS_FLcDNA=J013106K06;Expression=AK067298;TENOR=Os05t0397700-01;KEGG=Os05t0397700-01
Chr05	irgsp1_rep	five_prime_UTR	19353313	19353385	.	-	.	Parent=Os05t0397700-01
Chr05	irgsp1_rep	CDS	19352832	19353312	.	-	0	Parent=Os05t0397700-01
Chr05	irgsp1_rep	CDS	19352608	19352696	.	-	2	Parent=Os05t0397700-01
Chr05	irgsp1_rep	CDS	19352302	19352381	.	-	0	Parent=Os05t0397700-01
Chr05	irgsp1_rep	CDS	19352100	19352189	.	-	1	Parent=Os05t0397700-01
Chr05	irgsp1_rep	CDS	19351896	19351987	.	-	1	Parent=Os05t0397700-01
Chr05	irgsp1_rep	CDS	19351488	19351571	.	-	2	Parent=Os05t0397700-01
Chr05	irgsp1_rep	CDS	19350106	19350247	.	-	2	Parent=Os05t0397700-01
Chr05	irgsp1_rep	CDS	19349559	19349678	.	-	1	Parent=Os05t0397700-01
Chr05	irgsp1_rep	CDS	19349358	19349487	.	-	1	Parent=Os05t0397700-01
Chr05	irgsp1_rep	CDS	19348523	19348646	.	-	0	Parent=Os05t0397700-01
Chr05	irgsp1_rep	CDS	19348314	19348420	.	-	2	Parent=Os05t0397700-01
Chr05	irgsp1_rep	CDS	19346992	19347081	.	-	0	Parent=Os05t0397700-01
Chr05	irgsp1_rep	three_prime_UTR	19346947	19346991	.	-	.	Parent=Os05t0397700-01
Chr05	irgsp1_rep	three_prime_UTR	19346175	19346877	.	-	.	Parent=Os05t0397700-01
Chr05	irgsp1_rep	mRNA	19353553	19357897	.	+	.	ID=Os05t0397800-01;Name=Os05t0397800-01;Locus_id=Os05g0397800;Oryzabase Gene Symbol Synonym(s)=OsDJC82%2C DJC82;Oryzabase Gene Name Synonym(s)=type III J protein 82%2C rice DJC82 homolog;Note=Similar to dnaJ domain containing protein.;Transcript_evidence=AK064931 (DDBJ%2C Best hit);ORF_evidence=NP_001149610.1 (RefSeq);GO=Molecular Function: heat shock protein binding (GO:0031072);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623);NIAS_FLcDNA=J013000O10;Oryzabase=19632;TENOR=Os05t0397800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	19353553	19353602	.	+	.	Parent=Os05t0397800-01
Chr05	irgsp1_rep	CDS	19353603	19353887	.	+	0	Parent=Os05t0397800-01
Chr05	irgsp1_rep	CDS	19354293	19354373	.	+	0	Parent=Os05t0397800-01
Chr05	irgsp1_rep	CDS	19354931	19354940	.	+	0	Parent=Os05t0397800-01
Chr05	irgsp1_rep	CDS	19356104	19356159	.	+	2	Parent=Os05t0397800-01
Chr05	irgsp1_rep	three_prime_UTR	19356160	19356183	.	+	.	Parent=Os05t0397800-01
Chr05	irgsp1_rep	three_prime_UTR	19356521	19356604	.	+	.	Parent=Os05t0397800-01
Chr05	irgsp1_rep	three_prime_UTR	19356820	19356928	.	+	.	Parent=Os05t0397800-01
Chr05	irgsp1_rep	three_prime_UTR	19357551	19357897	.	+	.	Parent=Os05t0397800-01
Chr05	irgsp1_rep	mRNA	19359212	19363466	.	+	.	ID=Os05t0397900-01;Name=Os05t0397900-01;Locus_id=Os05g0397900;Note=Kinesin%2C motor region domain containing protein.;Transcript_evidence=AK102894 (DDBJ%2C Best hit);ORF_evidence=NP_001151487.1 (RefSeq);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752),Kinesin%2C motor region%2C conserved site (IPR019821);NIAS_FLcDNA=J033112N14;Expression=AK102894;TENOR=Os05t0397900-01;KEGG=Os05t0397900-01
Chr05	irgsp1_rep	five_prime_UTR	19359212	19359335	.	+	.	Parent=Os05t0397900-01
Chr05	irgsp1_rep	CDS	19359336	19359417	.	+	0	Parent=Os05t0397900-01
Chr05	irgsp1_rep	CDS	19359526	19359639	.	+	2	Parent=Os05t0397900-01
Chr05	irgsp1_rep	CDS	19359753	19359835	.	+	2	Parent=Os05t0397900-01
Chr05	irgsp1_rep	CDS	19359927	19360020	.	+	0	Parent=Os05t0397900-01
Chr05	irgsp1_rep	CDS	19360107	19360436	.	+	2	Parent=Os05t0397900-01
Chr05	irgsp1_rep	CDS	19360659	19360938	.	+	2	Parent=Os05t0397900-01
Chr05	irgsp1_rep	CDS	19361040	19361201	.	+	1	Parent=Os05t0397900-01
Chr05	irgsp1_rep	CDS	19361379	19361594	.	+	1	Parent=Os05t0397900-01
Chr05	irgsp1_rep	CDS	19361703	19361740	.	+	1	Parent=Os05t0397900-01
Chr05	irgsp1_rep	CDS	19361842	19362005	.	+	2	Parent=Os05t0397900-01
Chr05	irgsp1_rep	CDS	19362078	19362191	.	+	0	Parent=Os05t0397900-01
Chr05	irgsp1_rep	CDS	19362287	19362328	.	+	0	Parent=Os05t0397900-01
Chr05	irgsp1_rep	CDS	19362425	19363228	.	+	0	Parent=Os05t0397900-01
Chr05	irgsp1_rep	three_prime_UTR	19363229	19363466	.	+	.	Parent=Os05t0397900-01
Chr05	irgsp1_rep	mRNA	19363632	19365848	.	-	.	ID=Os05t0398000-01;Name=Os05t0398000-01;Locus_id=Os05g0398000;CGSNL Gene Symbol=CYCU3%3B1;CGSNL Gene Name=CYCLIN-U3-1;Oryzabase Gene Symbol Synonym(s)=CycU3%3B1%2C CycU3%3Bos%3B1%2C Orysa%3BCycU3%3B1%2C OsCYCP1%3B1;Oryzabase Gene Name Synonym(s)=U-type cyclin 3%3B1%2C P-type cyclin 1%3B1;Note=Similar to Cyclin-P3-1.;Transcript_evidence=AK070478 (DDBJ%2C Best hit);ORF_evidence=Q75HV0 (UniProt);GO=Biological Process: regulation of cyclin-dependent protein kinase activity (GO:0000079),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin PHO80-like (IPR013922);NIAS_FLcDNA=J023054E20;Oryzabase=13283;TENOR=Os05t0398000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	19364804	19365848	.	-	.	Parent=Os05t0398000-01
Chr05	irgsp1_rep	CDS	19364387	19364803	.	-	0	Parent=Os05t0398000-01
Chr05	irgsp1_rep	three_prime_UTR	19363632	19364386	.	-	.	Parent=Os05t0398000-01
Chr05	irgsp1_rep	mRNA	19363632	19365849	.	-	.	ID=Os05t0398000-02;Name=Os05t0398000-02;Locus_id=Os05g0398000;RAP-DB Gene Symbol Synonym(s)=OsCYCP1%3B1;RAP-DB Gene Name Synonym(s)=P-type cyclin 1%3B1;CGSNL Gene Symbol=CYCU3%3B1;CGSNL Gene Name=CYCLIN-U3-1;Oryzabase Gene Symbol Synonym(s)=CycU3%3B1%2C CycU3%3Bos%3B1%2C Orysa%3BCycU3%3B1%2C OsCYCP1%3B1;Oryzabase Gene Name Synonym(s)=U-type cyclin 3%3B1%2C P-type cyclin 1%3B1;Note=P-type cyclin%2C PHO80 homologous protein%2C Negative regulation of phosphate starvation signaling in root;Transcript_evidence=Inferred from literature;ORF_evidence=Q75HV0;GO=Biological Process: regulation of cyclin-dependent protein serine/threonine kinase activity (GO:0000079),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin-like superfamily (IPR036915),Cyclin PHO80-like (IPR013922),Cyclin P/U (IPR012389),Cyclin-like (IPR013763);Manual Curation=November 14%2C 2019;Literature_PMID=25315105;Oryzabase=13283;Subcellular location=nucleus (GO:0005634)
Chr05	irgsp1_rep	five_prime_UTR	19365659	19365849	.	-	.	Parent=Os05t0398000-02
Chr05	irgsp1_rep	five_prime_UTR	19364804	19364818	.	-	.	Parent=Os05t0398000-02
Chr05	irgsp1_rep	CDS	19364391	19364803	.	-	0	Parent=Os05t0398000-02
Chr05	irgsp1_rep	CDS	19363950	19364247	.	-	1	Parent=Os05t0398000-02
Chr05	irgsp1_rep	three_prime_UTR	19363632	19363949	.	-	.	Parent=Os05t0398000-02
Chr05	irgsp1_rep	mRNA	19368978	19371718	.	-	.	ID=Os05t0398100-01;Name=Os05t0398100-01;Locus_id=Os05g0398100;Note=Similar to predicted protein.;Transcript_evidence=AK241913 (DDBJ%2C Best hit);ORF_evidence=NP_850852.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069);NIAS_FLcDNA=J075062D24;TENOR=Os05t0398100-01;KEGG=Os05t0398100-01
Chr05	irgsp1_rep	five_prime_UTR	19371718	19371718	.	-	.	Parent=Os05t0398100-01
Chr05	irgsp1_rep	CDS	19371586	19371717	.	-	0	Parent=Os05t0398100-01
Chr05	irgsp1_rep	CDS	19370187	19370250	.	-	0	Parent=Os05t0398100-01
Chr05	irgsp1_rep	CDS	19370005	19370084	.	-	2	Parent=Os05t0398100-01
Chr05	irgsp1_rep	CDS	19369799	19369863	.	-	0	Parent=Os05t0398100-01
Chr05	irgsp1_rep	CDS	19369538	19369655	.	-	1	Parent=Os05t0398100-01
Chr05	irgsp1_rep	CDS	19369340	19369464	.	-	0	Parent=Os05t0398100-01
Chr05	irgsp1_rep	CDS	19369146	19369236	.	-	1	Parent=Os05t0398100-01
Chr05	irgsp1_rep	three_prime_UTR	19368978	19369145	.	-	.	Parent=Os05t0398100-01
Chr05	irgsp1_rep	mRNA	19369033	19377595	.	+	.	ID=Os05t0398450-00;Name=Os05t0398450-00;Locus_id=Os05g0398450;Note=Hypothetical protein.;Transcript_evidence=tplb0023b24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0398450-00
Chr05	irgsp1_rep	five_prime_UTR	19369033	19369229	.	+	.	Parent=Os05t0398450-00
Chr05	irgsp1_rep	five_prime_UTR	19369333	19369449	.	+	.	Parent=Os05t0398450-00
Chr05	irgsp1_rep	five_prime_UTR	19369521	19369643	.	+	.	Parent=Os05t0398450-00
Chr05	irgsp1_rep	five_prime_UTR	19369790	19369854	.	+	.	Parent=Os05t0398450-00
Chr05	irgsp1_rep	five_prime_UTR	19369999	19370083	.	+	.	Parent=Os05t0398450-00
Chr05	irgsp1_rep	five_prime_UTR	19370186	19370248	.	+	.	Parent=Os05t0398450-00
Chr05	irgsp1_rep	five_prime_UTR	19371584	19371723	.	+	.	Parent=Os05t0398450-00
Chr05	irgsp1_rep	five_prime_UTR	19371814	19371929	.	+	.	Parent=Os05t0398450-00
Chr05	irgsp1_rep	five_prime_UTR	19372016	19372102	.	+	.	Parent=Os05t0398450-00
Chr05	irgsp1_rep	five_prime_UTR	19372339	19372505	.	+	.	Parent=Os05t0398450-00
Chr05	irgsp1_rep	five_prime_UTR	19373418	19373536	.	+	.	Parent=Os05t0398450-00
Chr05	irgsp1_rep	five_prime_UTR	19373815	19373893	.	+	.	Parent=Os05t0398450-00
Chr05	irgsp1_rep	five_prime_UTR	19374205	19374306	.	+	.	Parent=Os05t0398450-00
Chr05	irgsp1_rep	five_prime_UTR	19375984	19376048	.	+	.	Parent=Os05t0398450-00
Chr05	irgsp1_rep	five_prime_UTR	19376168	19376293	.	+	.	Parent=Os05t0398450-00
Chr05	irgsp1_rep	five_prime_UTR	19376391	19376544	.	+	.	Parent=Os05t0398450-00
Chr05	irgsp1_rep	CDS	19376545	19376546	.	+	0	Parent=Os05t0398450-00
Chr05	irgsp1_rep	CDS	19376887	19377058	.	+	1	Parent=Os05t0398450-00
Chr05	irgsp1_rep	CDS	19377189	19377595	.	+	0	Parent=Os05t0398450-00
Chr05	irgsp1_rep	mRNA	19398909	19403514	.	+	.	ID=Os05t0398800-01;Name=Os05t0398800-01;Locus_id=Os05g0398800;Note=Similar to Serine/threonine-protein kinase PBS1 (EC 2.7.1.37) (AvrPphB susceptible protein 1).;Transcript_evidence=AK106842 (DDBJ%2C Best hit);ORF_evidence=C6ZRT6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-116-H07;Expression=AK106842;TENOR=Os05t0398800-01;KEGG=Os05t0398800-01 (EC:2.7.1.37)
Chr05	irgsp1_rep	five_prime_UTR	19398909	19399010	.	+	.	Parent=Os05t0398800-01
Chr05	irgsp1_rep	CDS	19399011	19399398	.	+	0	Parent=Os05t0398800-01
Chr05	irgsp1_rep	CDS	19399490	19399725	.	+	2	Parent=Os05t0398800-01
Chr05	irgsp1_rep	CDS	19401857	19402254	.	+	0	Parent=Os05t0398800-01
Chr05	irgsp1_rep	CDS	19402354	19402486	.	+	1	Parent=Os05t0398800-01
Chr05	irgsp1_rep	CDS	19402644	19402733	.	+	0	Parent=Os05t0398800-01
Chr05	irgsp1_rep	CDS	19402858	19403088	.	+	0	Parent=Os05t0398800-01
Chr05	irgsp1_rep	three_prime_UTR	19403089	19403514	.	+	.	Parent=Os05t0398800-01
Chr05	irgsp1_rep	mRNA	19409584	19413518	.	+	.	ID=Os05t0399100-01;Name=Os05t0399100-01;Locus_id=Os05g0399100;Note=Similar to Endo-1%2C3%3B1%2C4-beta-D-glucanase.;Transcript_evidence=AK073623 (DDBJ%2C Best hit),AK101551 (DDBJ%2C Best hit);ORF_evidence=NP_001148765.1 (RefSeq);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Dienelactone hydrolase (IPR002925);NIAS_FLcDNA=J033048N15,J033048O15;TENOR=Os05t0399100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	19409584	19409797	.	+	.	Parent=Os05t0399100-01
Chr05	irgsp1_rep	CDS	19409798	19409948	.	+	0	Parent=Os05t0399100-01
Chr05	irgsp1_rep	CDS	19410050	19410071	.	+	2	Parent=Os05t0399100-01
Chr05	irgsp1_rep	CDS	19411033	19411159	.	+	1	Parent=Os05t0399100-01
Chr05	irgsp1_rep	CDS	19412059	19412149	.	+	0	Parent=Os05t0399100-01
Chr05	irgsp1_rep	CDS	19412253	19412342	.	+	2	Parent=Os05t0399100-01
Chr05	irgsp1_rep	CDS	19412439	19412539	.	+	2	Parent=Os05t0399100-01
Chr05	irgsp1_rep	CDS	19413190	19413330	.	+	0	Parent=Os05t0399100-01
Chr05	irgsp1_rep	three_prime_UTR	19413331	19413518	.	+	.	Parent=Os05t0399100-01
Chr05	irgsp1_rep	mRNA	19409766	19413589	.	+	.	ID=Os05t0399100-02;Name=Os05t0399100-02;Locus_id=Os05g0399100;Note=Similar to Endo-1%2C3%3B1%2C4-beta-D-glucanase.;Transcript_evidence=AK060876 (DDBJ%2C Best hit);ORF_evidence=NP_001148765.1 (RefSeq);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Dienelactone hydrolase (IPR002925);NIAS_FLcDNA=001-035-A04;Expression=AK060876;TENOR=Os05t0399100-02;KEGG=Os05t0399100-02
Chr05	irgsp1_rep	five_prime_UTR	19409766	19409797	.	+	.	Parent=Os05t0399100-02
Chr05	irgsp1_rep	CDS	19409798	19409948	.	+	0	Parent=Os05t0399100-02
Chr05	irgsp1_rep	CDS	19410050	19410071	.	+	2	Parent=Os05t0399100-02
Chr05	irgsp1_rep	CDS	19411033	19411159	.	+	1	Parent=Os05t0399100-02
Chr05	irgsp1_rep	CDS	19412059	19412149	.	+	0	Parent=Os05t0399100-02
Chr05	irgsp1_rep	CDS	19412253	19412342	.	+	2	Parent=Os05t0399100-02
Chr05	irgsp1_rep	CDS	19412439	19412539	.	+	2	Parent=Os05t0399100-02
Chr05	irgsp1_rep	CDS	19413190	19413330	.	+	0	Parent=Os05t0399100-02
Chr05	irgsp1_rep	three_prime_UTR	19413331	19413589	.	+	.	Parent=Os05t0399100-02
Chr05	irgsp1_rep	mRNA	19415561	19423234	.	+	.	ID=Os05t0399200-01;Name=Os05t0399200-01;Locus_id=Os05g0399200;Note=Similar to Endo-1%2C3%3B1%2C4-beta-D-glucanase precursor (EC 3.2.1.-).;Transcript_evidence=AK101507 (DDBJ%2C Best hit);ORF_evidence=B4FTK9 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Dienelactone hydrolase (IPR002925);NIAS_FLcDNA=J033044O16;Expression=AK101507;TENOR=Os05t0399200-01;KEGG=Os05t0399200-01
Chr05	irgsp1_rep	five_prime_UTR	19415561	19415605	.	+	.	Parent=Os05t0399200-01
Chr05	irgsp1_rep	CDS	19415606	19415756	.	+	0	Parent=Os05t0399200-01
Chr05	irgsp1_rep	CDS	19415845	19415866	.	+	2	Parent=Os05t0399200-01
Chr05	irgsp1_rep	CDS	19416588	19416711	.	+	1	Parent=Os05t0399200-01
Chr05	irgsp1_rep	CDS	19417403	19417493	.	+	0	Parent=Os05t0399200-01
Chr05	irgsp1_rep	CDS	19417623	19417712	.	+	2	Parent=Os05t0399200-01
Chr05	irgsp1_rep	CDS	19417807	19417907	.	+	2	Parent=Os05t0399200-01
Chr05	irgsp1_rep	CDS	19422821	19422961	.	+	0	Parent=Os05t0399200-01
Chr05	irgsp1_rep	three_prime_UTR	19422962	19423234	.	+	.	Parent=Os05t0399200-01
Chr05	irgsp1_rep	mRNA	19426767	19427874	.	+	.	ID=Os05t0399300-01;Name=Os05t0399300-01;Locus_id=Os05g0399300;CGSNL Gene Symbol=CHT2;CGSNL Gene Name=CHITINASE 2;Oryzabase Gene Symbol Synonym(s)=Cht2*%2C Cht2%2C RC7%2C OsChia1b%2C Chia1b;Oryzabase Gene Name Synonym(s)=Chitinase 2%2C Pathogenesis related (PR)-3 chitinase 2 %3B Class I chitinase b%2C Chitinase-2(class I);Note=Similar to Chitinase.;Transcript_evidence=AK108949 (DDBJ%2C Best hit);ORF_evidence=Q7DNA1 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: chitin catabolic process (GO:0006032),Biological Process: cell wall macromolecule catabolic process (GO:0016998),Molecular Function: chitinase activity (GO:0004568);InterPro=Glycoside hydrolase%2C family 19%2C catalytic (IPR000726),Glycoside hydrolase%2C family 19 (IPR016283),Lysozyme-like domain (IPR023346);NIAS_FLcDNA=002-153-C03;Oryzabase=643;Expression=AK108949;TENOR=Os05t0399300-01;KEGG=Os05t0399300-01 (EC:3.2.1.14)
Chr05	irgsp1_rep	five_prime_UTR	19426767	19426767	.	+	.	Parent=Os05t0399300-01
Chr05	irgsp1_rep	CDS	19426768	19427063	.	+	0	Parent=Os05t0399300-01
Chr05	irgsp1_rep	CDS	19427193	19427592	.	+	1	Parent=Os05t0399300-01
Chr05	irgsp1_rep	three_prime_UTR	19427593	19427874	.	+	.	Parent=Os05t0399300-01
Chr05	irgsp1_rep	mRNA	19435401	19436495	.	+	.	ID=Os05t0399400-00;Name=Os05t0399400-00;Locus_id=Os05g0399400;CGSNL Gene Symbol=CHT9;CGSNL Gene Name=CHITINASE 9;Oryzabase Gene Symbol Synonym(s)=Cht9%2C Cht1;Oryzabase Gene Name Synonym(s)=Chitinase9%2C Chitinase 9%2C Pathogenesis related (PR)-3 chitinase 9%2C Chitinase-9;Note=Chitinase 9.;Transcript_evidence=Q688M5 (UniProt);ORF_evidence=Q688M5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: chitin catabolic process (GO:0006032),Biological Process: cell wall macromolecule catabolic process (GO:0016998),Molecular Function: chitinase activity (GO:0004568),Molecular Function: chitin binding (GO:0008061);InterPro=Glycoside hydrolase%2C family 19%2C catalytic (IPR000726),Chitin-binding%2C type 1 (IPR001002),Glycoside hydrolase%2C family 19 (IPR016283),Chitin-binding%2C type 1%2C conserved site (IPR018371),Lysozyme-like domain (IPR023346);Oryzabase=8131;TENOR=Os05t0399400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	19435401	19436014	.	+	0	Parent=Os05t0399400-00
Chr05	irgsp1_rep	CDS	19436105	19436495	.	+	1	Parent=Os05t0399400-00
Chr05	irgsp1_rep	mRNA	19445901	19447487	.	+	.	ID=Os05t0399700-01;Name=Os05t0399700-01;Locus_id=Os05g0399700;CGSNL Gene Symbol=CHIA1%3B175;CGSNL Gene Name=CLASS I CHITINASE;Oryzabase Gene Symbol Synonym(s)=OsChia1%3B175%2C PC%2C Cht7%2C OsChia1d%2C Chia1d;Oryzabase Gene Name Synonym(s)=chitinase 1%3B175%2C pistil-specific chitinase%2C Chitinase7%2C Chitinase 7%2C Chitinase-7%2C Pathogenesis related (PR)-3 chitinase 7%2C Class I chitinase d%2C Class III chitinase homologues (cDNA)-3;Note=Chitinase (EC 3.2.1.14).;Transcript_evidence=AK071196 (DDBJ%2C Best hit);ORF_evidence=Q7Y1Z1 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: chitin catabolic process (GO:0006032),Biological Process: cell wall macromolecule catabolic process (GO:0016998),Molecular Function: chitinase activity (GO:0004568),Molecular Function: chitin binding (GO:0008061);InterPro=Glycoside hydrolase%2C family 19%2C catalytic (IPR000726),Chitin-binding%2C type 1 (IPR001002),Glycoside hydrolase%2C family 19 (IPR016283),Chitin-binding%2C type 1%2C conserved site (IPR018371),Lysozyme-like domain (IPR023346);NIAS_FLcDNA=J023086B11;Oryzabase=6115;Expression=AK071196;TENOR=Os05t0399700-01;KEGG=Os05t0399700-01 (EC:3.2.1.14)
Chr05	irgsp1_rep	five_prime_UTR	19445901	19445974	.	+	.	Parent=Os05t0399700-01
Chr05	irgsp1_rep	CDS	19445975	19446467	.	+	0	Parent=Os05t0399700-01
Chr05	irgsp1_rep	CDS	19446553	19446685	.	+	2	Parent=Os05t0399700-01
Chr05	irgsp1_rep	CDS	19446885	19447281	.	+	1	Parent=Os05t0399700-01
Chr05	irgsp1_rep	three_prime_UTR	19447282	19447487	.	+	.	Parent=Os05t0399700-01
Chr05	irgsp1_rep	mRNA	19448731	19449841	.	-	.	ID=Os05t0399800-01;Name=Os05t0399800-01;Locus_id=Os05g0399800;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=AK242225 (DDBJ%2C Best hit);ORF_evidence=Q9LSI9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J075174K02;TENOR=Os05t0399800-01;KEGG=Os05t0399800-01
Chr05	irgsp1_rep	five_prime_UTR	19449734	19449841	.	-	.	Parent=Os05t0399800-01
Chr05	irgsp1_rep	CDS	19448966	19449733	.	-	0	Parent=Os05t0399800-01
Chr05	irgsp1_rep	three_prime_UTR	19448731	19448965	.	-	.	Parent=Os05t0399800-01
Chr05	irgsp1_rep	mRNA	19452826	19453438	.	-	.	ID=Os05t0399900-00;Name=Os05t0399900-00;Locus_id=Os05g0399900;Note=Conserved hypothetical protein.;Transcript_evidence=EU976876 (DDBJ);ORF_evidence=B9FVF5 (UniProt);TENOR=Os05t0399900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	19452917	19453438	.	-	0	Parent=Os05t0399900-00
Chr05	irgsp1_rep	three_prime_UTR	19452826	19452916	.	-	.	Parent=Os05t0399900-00
Chr05	irgsp1_rep	mRNA	19465133	19467637	.	+	.	ID=Os05t0400100-01;Name=Os05t0400100-01;Locus_id=Os05g0400100;Note=Dienelactone hydrolase domain containing protein.;Transcript_evidence=AK107541 (DDBJ%2C Best hit);ORF_evidence=Q688M0 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Dienelactone hydrolase (IPR002925);NIAS_FLcDNA=002-129-H09;Expression=AK107541;TENOR=Os05t0400100-01;KEGG=Os05t0400100-01
Chr05	irgsp1_rep	five_prime_UTR	19465133	19465240	.	+	.	Parent=Os05t0400100-01
Chr05	irgsp1_rep	CDS	19465241	19465529	.	+	0	Parent=Os05t0400100-01
Chr05	irgsp1_rep	CDS	19465706	19465727	.	+	2	Parent=Os05t0400100-01
Chr05	irgsp1_rep	CDS	19466054	19466180	.	+	1	Parent=Os05t0400100-01
Chr05	irgsp1_rep	CDS	19466443	19466533	.	+	0	Parent=Os05t0400100-01
Chr05	irgsp1_rep	CDS	19466890	19466979	.	+	2	Parent=Os05t0400100-01
Chr05	irgsp1_rep	CDS	19467077	19467176	.	+	2	Parent=Os05t0400100-01
Chr05	irgsp1_rep	CDS	19467339	19467492	.	+	1	Parent=Os05t0400100-01
Chr05	irgsp1_rep	three_prime_UTR	19467493	19467637	.	+	.	Parent=Os05t0400100-01
Chr05	irgsp1_rep	mRNA	19470226	19475222	.	+	.	ID=Os05t0400200-00;Name=Os05t0400200-00;Locus_id=Os05g0400200;Note=Similar to Retrotransposon protein Ty1-copia subclass.;Transcript_evidence=ab initio prediction;ORF_evidence=B6TMW5 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Dienelactone hydrolase (IPR002925);TENOR=Os05t0400200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	19470226	19470505	.	+	0	Parent=Os05t0400200-00
Chr05	irgsp1_rep	CDS	19471380	19471401	.	+	2	Parent=Os05t0400200-00
Chr05	irgsp1_rep	CDS	19471606	19471729	.	+	1	Parent=Os05t0400200-00
Chr05	irgsp1_rep	CDS	19471966	19472056	.	+	0	Parent=Os05t0400200-00
Chr05	irgsp1_rep	CDS	19472229	19472318	.	+	2	Parent=Os05t0400200-00
Chr05	irgsp1_rep	CDS	19472695	19472795	.	+	2	Parent=Os05t0400200-00
Chr05	irgsp1_rep	CDS	19475151	19475222	.	+	0	Parent=Os05t0400200-00
Chr05	irgsp1_rep	mRNA	19474448	19474520	.	-	.	ID=Os05t0400301-00;Name=Os05t0400301-00;Locus_id=Os05g0400301;Note=Non-protein coding transcript.;Transcript_evidence=X06283 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0400301-00
Chr05	irgsp1_rep	exon	19474448	19474520	.	-	.	Parent=Os05t0400301-00
Chr05	irgsp1_rep	mRNA	19475086	19478332	.	-	.	ID=Os05t0400400-01;Name=Os05t0400400-01;Locus_id=Os05g0400400;Note=Similar to Ubiquinol-cytoChrome c reductase complex 8.0 kDa protein (EC 1.10.2.2).;Transcript_evidence=AK062745 (DDBJ%2C Best hit);ORF_evidence=B6SPL8 (UniProt);GO=Biological Process: mitochondrial electron transport%2C ubiquinol to cytoChrome c (GO:0006122),Cellular Component: mitochondrial envelope (GO:0005740),Molecular Function: ubiquinol-cytoChrome-c reductase activity (GO:0008121);InterPro=Ubiquinol-cytoChrome C reductase%2C UQCRX/QCR9-like (IPR008027);NIAS_FLcDNA=001-106-F07;Expression=AK062745;TENOR=Os05t0400400-01;KEGG=Os05t0400400-01 (EC:1.10.2.2)
Chr05	irgsp1_rep	five_prime_UTR	19478245	19478332	.	-	.	Parent=Os05t0400400-01
Chr05	irgsp1_rep	CDS	19478152	19478244	.	-	0	Parent=Os05t0400400-01
Chr05	irgsp1_rep	CDS	19477988	19478035	.	-	0	Parent=Os05t0400400-01
Chr05	irgsp1_rep	CDS	19475369	19475416	.	-	0	Parent=Os05t0400400-01
Chr05	irgsp1_rep	three_prime_UTR	19475086	19475368	.	-	.	Parent=Os05t0400400-01
Chr05	irgsp1_rep	mRNA	19480823	19482167	.	+	.	ID=Os05t0400500-01;Name=Os05t0400500-01;Locus_id=Os05g0400500;Note=Similar to plasma membrane associated protein.;Transcript_evidence=AK062513 (DDBJ%2C Best hit);ORF_evidence=NP_001152600.1 (RefSeq);InterPro=AWPM-19-like (IPR008390);NIAS_FLcDNA=001-104-C04;Expression=AK062513;TENOR=Os05t0400500-01;KEGG=Os05t0400500-01
Chr05	irgsp1_rep	five_prime_UTR	19480823	19480864	.	+	.	Parent=Os05t0400500-01
Chr05	irgsp1_rep	CDS	19480865	19480961	.	+	0	Parent=Os05t0400500-01
Chr05	irgsp1_rep	CDS	19481808	19481920	.	+	2	Parent=Os05t0400500-01
Chr05	irgsp1_rep	three_prime_UTR	19481921	19482167	.	+	.	Parent=Os05t0400500-01
Chr05	irgsp1_rep	mRNA	19482867	19488407	.	+	.	ID=Os05t0400600-01;Name=Os05t0400600-01;Locus_id=Os05g0400600;RAP-DB Gene Symbol Synonym(s)=ARG1;RAP-DB Gene Name Synonym(s)=albino-revertible green 1;CGSNL Gene Symbol=ABCI8;CGSNL Gene Name=ABC TRANSPORTER I FAMILY MEMBER 8;Oryzabase Gene Symbol Synonym(s)=OsABCI8%2C OsABCI9%2C ABCI9;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCI subgroup member 8;Note=ATP-binding cassette (ABC) transporter family protein%2C Modulation of cobalt (Co) and nickel (Ni) transport and homeostasis;Transcript_evidence=AK072045;ORF_evidence=Q6ATY7;InterPro=ABC/ECF transporter%2C transmembrane component (IPR003339);NIAS_FLcDNA=J013108A03;Manual Curation=June 1%2C 2020;Literature_PMID=32464682;Oryzabase=12032;Expression=AK072045;TENOR=Os05t0400600-01;KEGG=Os05t0400600-01;Subcellular location=chloroplast (GO:0009507)
Chr05	irgsp1_rep	five_prime_UTR	19482867	19482926	.	+	.	Parent=Os05t0400600-01
Chr05	irgsp1_rep	CDS	19482927	19483283	.	+	0	Parent=Os05t0400600-01
Chr05	irgsp1_rep	CDS	19483996	19484112	.	+	0	Parent=Os05t0400600-01
Chr05	irgsp1_rep	CDS	19484605	19484841	.	+	0	Parent=Os05t0400600-01
Chr05	irgsp1_rep	CDS	19485171	19485333	.	+	0	Parent=Os05t0400600-01
Chr05	irgsp1_rep	CDS	19485431	19485508	.	+	2	Parent=Os05t0400600-01
Chr05	irgsp1_rep	CDS	19486433	19486497	.	+	2	Parent=Os05t0400600-01
Chr05	irgsp1_rep	CDS	19487551	19487700	.	+	0	Parent=Os05t0400600-01
Chr05	irgsp1_rep	three_prime_UTR	19487701	19487702	.	+	.	Parent=Os05t0400600-01
Chr05	irgsp1_rep	three_prime_UTR	19487795	19488047	.	+	.	Parent=Os05t0400600-01
Chr05	irgsp1_rep	three_prime_UTR	19488133	19488407	.	+	.	Parent=Os05t0400600-01
Chr05	irgsp1_rep	mRNA	19488438	19490587	.	-	.	ID=Os05t0400700-01;Name=Os05t0400700-01;Locus_id=Os05g0400700;Note=Similar to DNA-directed RNA polymerase II 19 kDa polypeptide (EC 2.7.7.6) (RNA polymerase II subunit 5).;Transcript_evidence=AK103913 (DDBJ%2C Best hit),AK072739 (DDBJ%2C Best hit);ORF_evidence=NP_001149597.1 (RefSeq);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: RNA binding (GO:0003723),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899);InterPro=Ribosomal protein S1%2C RNA-binding domain (IPR003029),RNA polymerase Rpb7%2C N-terminal (IPR005576),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=001-011-F11,J023138C10;Expression=AK103913;TENOR=Os05t0400700-01;KEGG=Os05t0400700-01 (EC:2.7.7.6)
Chr05	irgsp1_rep	five_prime_UTR	19490509	19490587	.	-	.	Parent=Os05t0400700-01
Chr05	irgsp1_rep	CDS	19490393	19490508	.	-	0	Parent=Os05t0400700-01
Chr05	irgsp1_rep	CDS	19490137	19490302	.	-	1	Parent=Os05t0400700-01
Chr05	irgsp1_rep	CDS	19489980	19490030	.	-	0	Parent=Os05t0400700-01
Chr05	irgsp1_rep	CDS	19489600	19489665	.	-	0	Parent=Os05t0400700-01
Chr05	irgsp1_rep	CDS	19489206	19489274	.	-	0	Parent=Os05t0400700-01
Chr05	irgsp1_rep	CDS	19488663	19488728	.	-	0	Parent=Os05t0400700-01
Chr05	irgsp1_rep	three_prime_UTR	19488438	19488662	.	-	.	Parent=Os05t0400700-01
Chr05	irgsp1_rep	mRNA	19490677	19497271	.	+	.	ID=Os05t0400800-01;Name=Os05t0400800-01;Locus_id=Os05g0400800;Note=Similar to 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase%2C chloroplast precursor (EC 5.3.1.16) (Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase) (5-proFAR isomerase) (BBM II).;Transcript_evidence=AK065701 (DDBJ%2C Best hit);ORF_evidence=B6UEA7 (UniProt);GO=Biological Process: histidine biosynthetic process (GO:0000105),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity (GO:0003949);InterPro=Ribulose-phosphate binding barrel (IPR011060),Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase%2C eukaryotic (IPR011858),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J013037E09;Expression=AK065701;TENOR=Os05t0400800-01;KEGG=Os05t0400800-01 (EC:5.3.1.16)
Chr05	irgsp1_rep	five_prime_UTR	19490677	19490805	.	+	.	Parent=Os05t0400800-01
Chr05	irgsp1_rep	five_prime_UTR	19490937	19490948	.	+	.	Parent=Os05t0400800-01
Chr05	irgsp1_rep	CDS	19490949	19491045	.	+	0	Parent=Os05t0400800-01
Chr05	irgsp1_rep	CDS	19491145	19491200	.	+	2	Parent=Os05t0400800-01
Chr05	irgsp1_rep	CDS	19491490	19491697	.	+	0	Parent=Os05t0400800-01
Chr05	irgsp1_rep	CDS	19494586	19494596	.	+	2	Parent=Os05t0400800-01
Chr05	irgsp1_rep	three_prime_UTR	19494597	19494687	.	+	.	Parent=Os05t0400800-01
Chr05	irgsp1_rep	three_prime_UTR	19495495	19495628	.	+	.	Parent=Os05t0400800-01
Chr05	irgsp1_rep	three_prime_UTR	19496092	19496140	.	+	.	Parent=Os05t0400800-01
Chr05	irgsp1_rep	three_prime_UTR	19496748	19497271	.	+	.	Parent=Os05t0400800-01
Chr05	irgsp1_rep	mRNA	19494586	19497282	.	+	.	ID=Os05t0400800-02;Name=Os05t0400800-02;Locus_id=Os05g0400800;Note=Similar to cDNA clone:J013037E09%2C full insert sequence.;Transcript_evidence=AK067898 (DDBJ%2C Best hit);ORF_evidence=B7EB81 (UniProt);GO=Biological Process: histidine biosynthetic process (GO:0000105),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity (GO:0003949);InterPro=Histidine biosynthesis (IPR006062),Ribulose-phosphate binding barrel (IPR011060),Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase%2C eukaryotic (IPR011858),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J013124K03;Expression=AK067898;TENOR=Os05t0400800-02;KEGG=Os05t0400800-02 (EC:5.3.1.16)
Chr05	irgsp1_rep	CDS	19494586	19494687	.	+	0	Parent=Os05t0400800-02
Chr05	irgsp1_rep	CDS	19495495	19495628	.	+	0	Parent=Os05t0400800-02
Chr05	irgsp1_rep	CDS	19496092	19496140	.	+	1	Parent=Os05t0400800-02
Chr05	irgsp1_rep	CDS	19496748	19496927	.	+	0	Parent=Os05t0400800-02
Chr05	irgsp1_rep	three_prime_UTR	19496928	19497282	.	+	.	Parent=Os05t0400800-02
Chr05	irgsp1_rep	mRNA	19503109	19507187	.	+	.	ID=Os05t0401000-01;Name=Os05t0401000-01;Locus_id=Os05g0401000;CGSNL Gene Symbol=GELP66;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 66;Oryzabase Gene Symbol Synonym(s)=OsGELP66;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 66;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK240941 (DDBJ%2C Best hit);ORF_evidence=Q2HTP0 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=J065042E06;Oryzabase=11016;TENOR=Os05t0401000-01;KEGG=Os05t0401000-01
Chr05	irgsp1_rep	five_prime_UTR	19503109	19503173	.	+	.	Parent=Os05t0401000-01
Chr05	irgsp1_rep	CDS	19503174	19503432	.	+	0	Parent=Os05t0401000-01
Chr05	irgsp1_rep	CDS	19504684	19504884	.	+	2	Parent=Os05t0401000-01
Chr05	irgsp1_rep	CDS	19505671	19505837	.	+	2	Parent=Os05t0401000-01
Chr05	irgsp1_rep	CDS	19506064	19506334	.	+	0	Parent=Os05t0401000-01
Chr05	irgsp1_rep	CDS	19506795	19507063	.	+	2	Parent=Os05t0401000-01
Chr05	irgsp1_rep	three_prime_UTR	19507064	19507187	.	+	.	Parent=Os05t0401000-01
Chr05	irgsp1_rep	mRNA	19503259	19504885	.	-	.	ID=Os05t0401050-00;Name=Os05t0401050-00;Locus_id=Os05g0401050;Note=Non-protein coding transcript.;Transcript_evidence=BT086843 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0401050-00
Chr05	irgsp1_rep	exon	19504672	19504885	.	-	.	Parent=Os05t0401050-00
Chr05	irgsp1_rep	exon	19503259	19503424	.	-	.	Parent=Os05t0401050-00
Chr05	irgsp1_rep	mRNA	19507539	19508996	.	-	.	ID=Os05t0401100-01;Name=Os05t0401100-01;Locus_id=Os05g0401100;Note=Protein of unknown function DUF477 family protein.;Transcript_evidence=AK067179 (DDBJ%2C Best hit);ORF_evidence=A2Y4G9 (UniProt);InterPro=Protein of unknown function DUF477 (IPR007621);NIAS_FLcDNA=J013097F03;Expression=AK067179;TENOR=Os05t0401100-01;KEGG=Os05t0401100-01
Chr05	irgsp1_rep	five_prime_UTR	19508906	19508996	.	-	.	Parent=Os05t0401100-01
Chr05	irgsp1_rep	CDS	19508447	19508905	.	-	0	Parent=Os05t0401100-01
Chr05	irgsp1_rep	CDS	19508145	19508337	.	-	0	Parent=Os05t0401100-01
Chr05	irgsp1_rep	CDS	19507812	19508059	.	-	2	Parent=Os05t0401100-01
Chr05	irgsp1_rep	three_prime_UTR	19507539	19507811	.	-	.	Parent=Os05t0401100-01
Chr05	irgsp1_rep	mRNA	19507638	19508962	.	-	.	ID=Os05t0401100-02;Name=Os05t0401100-02;Locus_id=Os05g0401100;Note=Protein of unknown function DUF477 family protein.;Transcript_evidence=AK058790 (DDBJ%2C Best hit);ORF_evidence=A2Y4G9 (UniProt);InterPro=Protein of unknown function DUF477 (IPR007621);NIAS_FLcDNA=001-002-F03;Expression=AK058790;TENOR=Os05t0401100-02;KEGG=Os05t0401100-02
Chr05	irgsp1_rep	five_prime_UTR	19508906	19508962	.	-	.	Parent=Os05t0401100-02
Chr05	irgsp1_rep	CDS	19508447	19508905	.	-	0	Parent=Os05t0401100-02
Chr05	irgsp1_rep	CDS	19508145	19508337	.	-	0	Parent=Os05t0401100-02
Chr05	irgsp1_rep	CDS	19507812	19508059	.	-	2	Parent=Os05t0401100-02
Chr05	irgsp1_rep	three_prime_UTR	19507638	19507811	.	-	.	Parent=Os05t0401100-02
Chr05	irgsp1_rep	mRNA	19510003	19514138	.	-	.	ID=Os05t0401200-01;Name=Os05t0401200-01;Locus_id=Os05g0401200;Note=Similar to predicted protein.;Transcript_evidence=AK240752 (DDBJ%2C Best hit);ORF_evidence=B9FIC8 (UniProt);InterPro=Protein of unknown function DUF3119 (IPR021467);NIAS_FLcDNA=J043040P14;TENOR=Os05t0401200-01;KEGG=Os05t0401200-01
Chr05	irgsp1_rep	five_prime_UTR	19514003	19514138	.	-	.	Parent=Os05t0401200-01
Chr05	irgsp1_rep	five_prime_UTR	19512757	19513000	.	-	.	Parent=Os05t0401200-01
Chr05	irgsp1_rep	CDS	19512702	19512756	.	-	0	Parent=Os05t0401200-01
Chr05	irgsp1_rep	CDS	19512029	19512129	.	-	2	Parent=Os05t0401200-01
Chr05	irgsp1_rep	CDS	19511611	19511683	.	-	0	Parent=Os05t0401200-01
Chr05	irgsp1_rep	CDS	19511401	19511483	.	-	2	Parent=Os05t0401200-01
Chr05	irgsp1_rep	CDS	19511004	19511042	.	-	0	Parent=Os05t0401200-01
Chr05	irgsp1_rep	CDS	19510695	19510765	.	-	0	Parent=Os05t0401200-01
Chr05	irgsp1_rep	CDS	19510342	19510456	.	-	1	Parent=Os05t0401200-01
Chr05	irgsp1_rep	CDS	19510197	19510265	.	-	0	Parent=Os05t0401200-01
Chr05	irgsp1_rep	three_prime_UTR	19510003	19510196	.	-	.	Parent=Os05t0401200-01
Chr05	irgsp1_rep	mRNA	19514302	19517416	.	+	.	ID=Os05t0401300-01;Name=Os05t0401300-01;Locus_id=Os05g0401300;Note=Mog1/PsbP%2C alpha/beta/alpha sandwich domain containing protein.;Transcript_evidence=AK060678 (DDBJ%2C Best hit);ORF_evidence=B9FPI3 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: oxygen evolving complex (GO:0009654),Cellular Component: extrinsic to membrane (GO:0019898),Molecular Function: calcium ion binding (GO:0005509);InterPro=Photosystem II PsbP%2C oxygen evolving complex (IPR002683),Mog1/PsbP%2C alpha/beta/alpha sandwich (IPR016123),Mog1/PsbP/DUF1795%2C alpha/beta/alpha sandwich (IPR016124);NIAS_FLcDNA=001-029-C06;Expression=AK060678;TENOR=Os05t0401300-01;KEGG=Os05t0401300-01
Chr05	irgsp1_rep	five_prime_UTR	19514302	19514399	.	+	.	Parent=Os05t0401300-01
Chr05	irgsp1_rep	CDS	19514400	19514738	.	+	0	Parent=Os05t0401300-01
Chr05	irgsp1_rep	CDS	19514856	19514935	.	+	0	Parent=Os05t0401300-01
Chr05	irgsp1_rep	CDS	19515133	19515193	.	+	1	Parent=Os05t0401300-01
Chr05	irgsp1_rep	CDS	19515964	19516021	.	+	0	Parent=Os05t0401300-01
Chr05	irgsp1_rep	CDS	19516640	19516697	.	+	2	Parent=Os05t0401300-01
Chr05	irgsp1_rep	CDS	19516825	19516897	.	+	1	Parent=Os05t0401300-01
Chr05	irgsp1_rep	CDS	19517152	19517244	.	+	0	Parent=Os05t0401300-01
Chr05	irgsp1_rep	three_prime_UTR	19517245	19517416	.	+	.	Parent=Os05t0401300-01
Chr05	irgsp1_rep	mRNA	19525140	19525710	.	-	.	ID=Os05t0401500-01;Name=Os05t0401500-01;Locus_id=Os05g0401500;Note=Similar to oxidoreductase%2C 2OG-Fe oxygenase family protein.;Transcript_evidence=AK058850 (DDBJ%2C Best hit);ORF_evidence=NP_001147582.1 (RefSeq);NIAS_FLcDNA=001-004-H10;Expression=AK058850;TENOR=Os05t0401500-01;KEGG=Os05t0401500-01
Chr05	irgsp1_rep	CDS	19525642	19525710	.	-	0	Parent=Os05t0401500-01
Chr05	irgsp1_rep	three_prime_UTR	19525140	19525641	.	-	.	Parent=Os05t0401500-01
Chr05	irgsp1_rep	mRNA	19588424	19590720	.	-	.	ID=Os05t0402300-02;Name=Os05t0402300-02;Locus_id=Os05g0402300;Note=Uncharacterised protein family UPF0005 domain containing protein.;Transcript_evidence=AK070043 (DDBJ%2C Best hit),AK104199 (DDBJ%2C Best hit),AK104366 (DDBJ%2C Best hit);ORF_evidence=NP_001149877.1 (RefSeq);NIAS_FLcDNA=J023039E14,006-304-A08,001-035-D07;Expression=AK070043;TENOR=Os05t0402300-02;KEGG=Os05t0402300-02
Chr05	irgsp1_rep	five_prime_UTR	19590641	19590720	.	-	.	Parent=Os05t0402300-02
Chr05	irgsp1_rep	CDS	19590331	19590640	.	-	0	Parent=Os05t0402300-02
Chr05	irgsp1_rep	CDS	19589219	19589332	.	-	2	Parent=Os05t0402300-02
Chr05	irgsp1_rep	CDS	19588974	19589132	.	-	2	Parent=Os05t0402300-02
Chr05	irgsp1_rep	CDS	19588654	19588865	.	-	2	Parent=Os05t0402300-02
Chr05	irgsp1_rep	three_prime_UTR	19588424	19588653	.	-	.	Parent=Os05t0402300-02
Chr05	irgsp1_rep	mRNA	19606771	19608914	.	+	.	ID=Os05t0402700-01;Name=Os05t0402700-01;Locus_id=Os05g0402700;Oryzabase Gene Symbol Synonym(s)=GSC 233%2C AldC-2;Oryzabase Gene Name Synonym(s)=fructose-diphosphate aldolase%2C aldolase isozyme C-2%2C aldolase C-2%2C cytoplasmic aldolase C-2;Note=Similar to Fructose-bisphosphate aldolase%2C cytoplasmic isozyme (EC 4.1.2.13).;Transcript_evidence=AK061050 (DDBJ%2C Best hit);ORF_evidence=B8AY35 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: fructose-bisphosphate aldolase activity (GO:0004332);InterPro=Fructose-bisphosphate aldolase%2C class-I (IPR000741),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=006-205-G03;Oryzabase=13714;Expression=AK061050;TENOR=Os05t0402700-01;KEGG=Os05t0402700-01 (EC:4.1.2.13)
Chr05	irgsp1_rep	five_prime_UTR	19606771	19606912	.	+	.	Parent=Os05t0402700-01
Chr05	irgsp1_rep	CDS	19606913	19606940	.	+	0	Parent=Os05t0402700-01
Chr05	irgsp1_rep	CDS	19607688	19608571	.	+	2	Parent=Os05t0402700-01
Chr05	irgsp1_rep	CDS	19608700	19608789	.	+	0	Parent=Os05t0402700-01
Chr05	irgsp1_rep	three_prime_UTR	19608790	19608914	.	+	.	Parent=Os05t0402700-01
Chr05	irgsp1_rep	mRNA	19609681	19624705	.	-	.	ID=Os05t0402800-01;Name=Os05t0402800-01;Locus_id=Os05g0402800;RAP-DB Gene Symbol Synonym(s)=OsPDR2;RAP-DB Gene Name Synonym(s)=Phosphate Deficiency Response2;CGSNL Gene Symbol=PDR2;CGSNL Gene Name=PHOSPHATE DEFICIENCY RESPONSE 2;Oryzabase Gene Symbol Synonym(s)=OsPDR2;Oryzabase Gene Name Synonym(s)=Phosphate Deficiency Response2;Note=Homolog of Arabidopsis Phosphate Deficiency Response2 (AtPDR2)%2C P5 type ATPase%2C Regulation of Pi homeostasis;Transcript_evidence=AK240734 (truncated),Inferred from literature;ORF_evidence=Inferred from literature;GO=Biological Process: cation transport (GO:0006812),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATPase activity (GO:0016887),Cellular Component: integral component of membrane (GO:0016021);InterPro=P-type ATPase%2C transmembrane domain superfamily (IPR023298),P-type ATPase%2C A domain superfamily (IPR008250),HAD-like superfamily (IPR036412),P-type ATPase%2C cytoplasmic domain N (IPR023299),HAD superfamily (IPR023214),P-type ATPase (IPR001757),P-type ATPase%2C subfamily  V (IPR006544),P-type ATPase%2C phosphorylation site (IPR018303);NIAS_FLcDNA=J043031N23 (truncated);Manual Curation=February 10%2C 2020;Literature_PMID=32028088;Oryzabase=23466;TENOR=Os05t0402800-01;KEGG=Os05t0402800-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=endoplasmic reticulum (GO:0005783)
Chr05	irgsp1_rep	five_prime_UTR	19624449	19624705	.	-	.	Parent=Os05t0402800-01
Chr05	irgsp1_rep	CDS	19624004	19624448	.	-	0	Parent=Os05t0402800-01
Chr05	irgsp1_rep	CDS	19623717	19623900	.	-	2	Parent=Os05t0402800-01
Chr05	irgsp1_rep	CDS	19622267	19622339	.	-	1	Parent=Os05t0402800-01
Chr05	irgsp1_rep	CDS	19622014	19622186	.	-	0	Parent=Os05t0402800-01
Chr05	irgsp1_rep	CDS	19621758	19621923	.	-	1	Parent=Os05t0402800-01
Chr05	irgsp1_rep	CDS	19620937	19621041	.	-	0	Parent=Os05t0402800-01
Chr05	irgsp1_rep	CDS	19620429	19620539	.	-	0	Parent=Os05t0402800-01
Chr05	irgsp1_rep	CDS	19620264	19620350	.	-	0	Parent=Os05t0402800-01
Chr05	irgsp1_rep	CDS	19619983	19620165	.	-	0	Parent=Os05t0402800-01
Chr05	irgsp1_rep	CDS	19619852	19619902	.	-	0	Parent=Os05t0402800-01
Chr05	irgsp1_rep	CDS	19619653	19619778	.	-	0	Parent=Os05t0402800-01
Chr05	irgsp1_rep	CDS	19619470	19619549	.	-	0	Parent=Os05t0402800-01
Chr05	irgsp1_rep	CDS	19618784	19618892	.	-	1	Parent=Os05t0402800-01
Chr05	irgsp1_rep	CDS	19616190	19616318	.	-	0	Parent=Os05t0402800-01
Chr05	irgsp1_rep	CDS	19613789	19613854	.	-	0	Parent=Os05t0402800-01
Chr05	irgsp1_rep	CDS	19613623	19613694	.	-	0	Parent=Os05t0402800-01
Chr05	irgsp1_rep	CDS	19613264	19613412	.	-	0	Parent=Os05t0402800-01
Chr05	irgsp1_rep	CDS	19612413	19612524	.	-	1	Parent=Os05t0402800-01
Chr05	irgsp1_rep	CDS	19611894	19612010	.	-	0	Parent=Os05t0402800-01
Chr05	irgsp1_rep	CDS	19609881	19610954	.	-	0	Parent=Os05t0402800-01
Chr05	irgsp1_rep	three_prime_UTR	19609681	19609880	.	-	.	Parent=Os05t0402800-01
Chr05	irgsp1_rep	mRNA	19618804	19624379	.	+	.	ID=Os05t0402851-00;Name=Os05t0402851-00;Locus_id=Os05g0402851;Note=Hypothetical protein.;Transcript_evidence=AK367635 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0402851-00
Chr05	irgsp1_rep	five_prime_UTR	19618804	19618878	.	+	.	Parent=Os05t0402851-00
Chr05	irgsp1_rep	five_prime_UTR	19619458	19619540	.	+	.	Parent=Os05t0402851-00
Chr05	irgsp1_rep	five_prime_UTR	19619641	19619798	.	+	.	Parent=Os05t0402851-00
Chr05	irgsp1_rep	five_prime_UTR	19619959	19620171	.	+	.	Parent=Os05t0402851-00
Chr05	irgsp1_rep	five_prime_UTR	19620270	19620345	.	+	.	Parent=Os05t0402851-00
Chr05	irgsp1_rep	five_prime_UTR	19620425	19620549	.	+	.	Parent=Os05t0402851-00
Chr05	irgsp1_rep	five_prime_UTR	19620948	19621038	.	+	.	Parent=Os05t0402851-00
Chr05	irgsp1_rep	five_prime_UTR	19621755	19621933	.	+	.	Parent=Os05t0402851-00
Chr05	irgsp1_rep	five_prime_UTR	19622023	19622183	.	+	.	Parent=Os05t0402851-00
Chr05	irgsp1_rep	five_prime_UTR	19622264	19622325	.	+	.	Parent=Os05t0402851-00
Chr05	irgsp1_rep	five_prime_UTR	19623706	19623916	.	+	.	Parent=Os05t0402851-00
Chr05	irgsp1_rep	five_prime_UTR	19624001	19624015	.	+	.	Parent=Os05t0402851-00
Chr05	irgsp1_rep	CDS	19624016	19624103	.	+	0	Parent=Os05t0402851-00
Chr05	irgsp1_rep	CDS	19624207	19624379	.	+	2	Parent=Os05t0402851-00
Chr05	irgsp1_rep	mRNA	19631965	19633439	.	+	.	ID=Os05t0402900-01;Name=Os05t0402900-01;Locus_id=Os05g0402900;Oryzabase Gene Symbol Synonym(s)=OsBphi262;Oryzabase Gene Name Synonym(s)=BPH-inducible gene 262%2C Brown planthopper-inducible gene 262;Note=Similar to EDGP.;Transcript_evidence=AK070554 (DDBJ%2C Best hit);ORF_evidence=B9VUU9 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J023061A08;Oryzabase=14700;Expression=AK070554;TENOR=Os05t0402900-01;KEGG=Os05t0402900-01
Chr05	irgsp1_rep	five_prime_UTR	19631965	19632001	.	+	.	Parent=Os05t0402900-01
Chr05	irgsp1_rep	CDS	19632002	19633315	.	+	0	Parent=Os05t0402900-01
Chr05	irgsp1_rep	three_prime_UTR	19633316	19633439	.	+	.	Parent=Os05t0402900-01
Chr05	irgsp1_rep	mRNA	19634463	19635893	.	+	.	ID=Os05t0403000-01;Name=Os05t0403000-01;Locus_id=Os05g0403000;Note=Peptidase aspartic%2C catalytic domain containing protein.;Transcript_evidence=AK318516 (DDBJ%2C Best hit),AK287461 (DDBJ%2C Best hit);ORF_evidence=B9VUU9 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J033133O21,J043020F21;TENOR=Os05t0403000-01;KEGG=Os05t0403000-01
Chr05	irgsp1_rep	five_prime_UTR	19634463	19634500	.	+	.	Parent=Os05t0403000-01
Chr05	irgsp1_rep	CDS	19634501	19635814	.	+	0	Parent=Os05t0403000-01
Chr05	irgsp1_rep	three_prime_UTR	19635815	19635893	.	+	.	Parent=Os05t0403000-01
Chr05	irgsp1_rep	mRNA	19638874	19640194	.	+	.	ID=Os05t0403100-00;Name=Os05t0403100-00;Locus_id=Os05g0403100;Note=Peptidase A1 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6AUL1 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);TENOR=Os05t0403100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	19638874	19639381	.	+	0	Parent=Os05t0403100-00
Chr05	irgsp1_rep	CDS	19639653	19640194	.	+	2	Parent=Os05t0403100-00
Chr05	irgsp1_rep	mRNA	19639074	19640220	.	-	.	ID=Os05t0403200-00;Name=Os05t0403200-00;Locus_id=Os05g0403200;Note=Hypothetical protein.;Transcript_evidence=BT009260 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0403200-00
Chr05	irgsp1_rep	five_prime_UTR	19639479	19640220	.	-	.	Parent=Os05t0403200-00
Chr05	irgsp1_rep	CDS	19639074	19639478	.	-	0	Parent=Os05t0403200-00
Chr05	irgsp1_rep	mRNA	19645657	19647395	.	+	.	ID=Os05t0403300-01;Name=Os05t0403300-01;Locus_id=Os05g0403300;Note=Peptidase A1 domain containing protein.;Transcript_evidence=AK122177 (DDBJ%2C Best hit);ORF_evidence=E9MZE4 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J033148M15;Expression=AK122177;TENOR=Os05t0403300-01;KEGG=Os05t0403300-01
Chr05	irgsp1_rep	five_prime_UTR	19645657	19645887	.	+	.	Parent=Os05t0403300-01
Chr05	irgsp1_rep	CDS	19645888	19647255	.	+	0	Parent=Os05t0403300-01
Chr05	irgsp1_rep	three_prime_UTR	19647256	19647395	.	+	.	Parent=Os05t0403300-01
Chr05	irgsp1_rep	mRNA	19649766	19651093	.	-	.	ID=Os05t0403400-01;Name=Os05t0403400-01;Locus_id=Os05g0403400;Note=Mitochodrial transcription termination factor-related family protein.;Transcript_evidence=AK064244 (DDBJ%2C Best hit);ORF_evidence=B9FID4 (UniProt);InterPro=Mitochodrial transcription termination factor-related (IPR003690);NIAS_FLcDNA=002-105-B09;Expression=AK064244;TENOR=Os05t0403400-01;KEGG=Os05t0403400-01
Chr05	irgsp1_rep	five_prime_UTR	19651074	19651093	.	-	.	Parent=Os05t0403400-01
Chr05	irgsp1_rep	CDS	19649892	19651073	.	-	0	Parent=Os05t0403400-01
Chr05	irgsp1_rep	three_prime_UTR	19649766	19649891	.	-	.	Parent=Os05t0403400-01
Chr05	irgsp1_rep	mRNA	19658396	19659878	.	-	.	ID=Os05t0403600-01;Name=Os05t0403600-01;Locus_id=Os05g0403600;Note=Mitochodrial transcription termination factor-related family protein.;Transcript_evidence=AK073042 (DDBJ%2C Best hit);ORF_evidence=B6SJK3 (UniProt);InterPro=Mitochodrial transcription termination factor-related (IPR003690);NIAS_FLcDNA=J023150H08;Expression=AK073042;TENOR=Os05t0403600-01;KEGG=Os05t0403600-01
Chr05	irgsp1_rep	five_prime_UTR	19659871	19659878	.	-	.	Parent=Os05t0403600-01
Chr05	irgsp1_rep	CDS	19658671	19659870	.	-	0	Parent=Os05t0403600-01
Chr05	irgsp1_rep	three_prime_UTR	19658396	19658670	.	-	.	Parent=Os05t0403600-01
Chr05	irgsp1_rep	mRNA	19678186	19680083	.	+	.	ID=Os05t0404000-01;Name=Os05t0404000-01;Locus_id=Os05g0404000;Note=Mitochodrial transcription termination factor-related family protein.;Transcript_evidence=AK102821 (DDBJ%2C Best hit);ORF_evidence=NP_001149660.1 (RefSeq);InterPro=Mitochodrial transcription termination factor-related (IPR003690);NIAS_FLcDNA=J033108O14;Expression=AK102821;TENOR=Os05t0404000-01;KEGG=Os05t0404000-01
Chr05	irgsp1_rep	five_prime_UTR	19678186	19678240	.	+	.	Parent=Os05t0404000-01
Chr05	irgsp1_rep	CDS	19678241	19679767	.	+	0	Parent=Os05t0404000-01
Chr05	irgsp1_rep	three_prime_UTR	19679768	19680083	.	+	.	Parent=Os05t0404000-01
Chr05	irgsp1_rep	mRNA	19681768	19684597	.	+	.	ID=Os05t0404200-01;Name=Os05t0404200-01;Locus_id=Os05g0404200;Oryzabase Gene Symbol Synonym(s)=OsMSRB3%2C MSRB3;Oryzabase Gene Name Synonym(s)=Methionine sulfoxide reductase B3;Note=Methionine sulphoxide reductase B domain containing protein.;Transcript_evidence=AK071730 (DDBJ%2C Best hit),AK104169 (DDBJ%2C Best hit);ORF_evidence=Q6AUK5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peptide-methionine-(S)-S-oxide reductase activity (GO:0008113);InterPro=Methionine sulphoxide reductase B (IPR002579),Mss4-like (IPR011057);NIAS_FLcDNA=J023110A15,006-212-F02;Oryzabase=20905;TENOR=Os05t0404200-01
Chr05	irgsp1_rep	five_prime_UTR	19681768	19681796	.	+	.	Parent=Os05t0404200-01
Chr05	irgsp1_rep	CDS	19681797	19682164	.	+	0	Parent=Os05t0404200-01
Chr05	irgsp1_rep	CDS	19683915	19684071	.	+	1	Parent=Os05t0404200-01
Chr05	irgsp1_rep	CDS	19684184	19684348	.	+	0	Parent=Os05t0404200-01
Chr05	irgsp1_rep	three_prime_UTR	19684349	19684597	.	+	.	Parent=Os05t0404200-01
Chr05	irgsp1_rep	mRNA	19681845	19684490	.	+	.	ID=Os05t0404200-02;Name=Os05t0404200-02;Locus_id=Os05g0404200;Oryzabase Gene Symbol Synonym(s)=OsMSRB3%2C MSRB3;Oryzabase Gene Name Synonym(s)=Methionine sulfoxide reductase B3;Note=Similar to Peptide methionine sulfoxide reductase B3%2C chloroplastic.;Transcript_evidence=AK099324 (DDBJ%2C Best hit);ORF_evidence=Q6AUK5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peptide-methionine-(S)-S-oxide reductase activity (GO:0008113);InterPro=Methionine sulphoxide reductase B (IPR002579),Mss4-like (IPR011057);NIAS_FLcDNA=J033000M22;Oryzabase=20905;TENOR=Os05t0404200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	19681845	19682051	.	+	.	Parent=Os05t0404200-02
Chr05	irgsp1_rep	CDS	19682052	19682164	.	+	0	Parent=Os05t0404200-02
Chr05	irgsp1_rep	CDS	19683915	19684071	.	+	1	Parent=Os05t0404200-02
Chr05	irgsp1_rep	CDS	19684184	19684348	.	+	0	Parent=Os05t0404200-02
Chr05	irgsp1_rep	three_prime_UTR	19684349	19684490	.	+	.	Parent=Os05t0404200-02
Chr05	irgsp1_rep	mRNA	19684829	19686823	.	-	.	ID=Os05t0404300-01;Name=Os05t0404300-01;Locus_id=Os05g0404300;Note=Similar to AlNc14C59G4370 protein.;Transcript_evidence=AK107768 (DDBJ%2C Best hit);ORF_evidence=F0WCJ0 (UniProt);NIAS_FLcDNA=002-133-B04;Expression=AK107768;TENOR=Os05t0404300-01;KEGG=Os05t0404300-01
Chr05	irgsp1_rep	five_prime_UTR	19686787	19686823	.	-	.	Parent=Os05t0404300-01
Chr05	irgsp1_rep	CDS	19686630	19686786	.	-	0	Parent=Os05t0404300-01
Chr05	irgsp1_rep	CDS	19686407	19686451	.	-	2	Parent=Os05t0404300-01
Chr05	irgsp1_rep	CDS	19685233	19685288	.	-	2	Parent=Os05t0404300-01
Chr05	irgsp1_rep	three_prime_UTR	19685201	19685232	.	-	.	Parent=Os05t0404300-01
Chr05	irgsp1_rep	three_prime_UTR	19684829	19685083	.	-	.	Parent=Os05t0404300-01
Chr05	irgsp1_rep	mRNA	19691508	19694215	.	-	.	ID=Os05t0404400-01;Name=Os05t0404400-01;Locus_id=Os05g0404400;Note=Similar to RPH1 (RESISTANCE TO PHYTOPHTHORA 1).;Transcript_evidence=AK104635 (DDBJ%2C Best hit);ORF_evidence=NP_566122.1 (RefSeq);NIAS_FLcDNA=006-310-D02;TENOR=Os05t0404400-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	19693916	19694215	.	-	0	Parent=Os05t0404400-01
Chr05	irgsp1_rep	CDS	19692696	19692906	.	-	0	Parent=Os05t0404400-01
Chr05	irgsp1_rep	CDS	19691933	19692102	.	-	2	Parent=Os05t0404400-01
Chr05	irgsp1_rep	CDS	19691819	19691845	.	-	0	Parent=Os05t0404400-01
Chr05	irgsp1_rep	three_prime_UTR	19691508	19691818	.	-	.	Parent=Os05t0404400-01
Chr05	irgsp1_rep	mRNA	19691349	19694288	.	-	.	ID=Os05t0404400-02;Name=Os05t0404400-02;Locus_id=Os05g0404400;Note=Similar to RPH1 (RESISTANCE TO PHYTOPHTHORA 1).;Transcript_evidence=AK065418 (DDBJ%2C Best hit),AK104172 (DDBJ%2C Best hit);ORF_evidence=NP_566122.1 (RefSeq);NIAS_FLcDNA=J013023J24,006-301-B09;Expression=AK065418;TENOR=Os05t0404400-02;KEGG=Os05t0404400-02
Chr05	irgsp1_rep	five_prime_UTR	19694228	19694288	.	-	.	Parent=Os05t0404400-02
Chr05	irgsp1_rep	CDS	19693916	19694227	.	-	0	Parent=Os05t0404400-02
Chr05	irgsp1_rep	CDS	19692696	19692906	.	-	0	Parent=Os05t0404400-02
Chr05	irgsp1_rep	CDS	19691933	19692102	.	-	2	Parent=Os05t0404400-02
Chr05	irgsp1_rep	CDS	19691819	19691845	.	-	0	Parent=Os05t0404400-02
Chr05	irgsp1_rep	three_prime_UTR	19691349	19691818	.	-	.	Parent=Os05t0404400-02
Chr05	irgsp1_rep	mRNA	19700612	19704404	.	+	.	ID=Os05t0404500-01;Name=Os05t0404500-01;Locus_id=Os05g0404500;Note=Hypothetical protein.;Transcript_evidence=AK103780 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033145G03;Expression=AK103780;TENOR=Os05t0404500-01;KEGG=Os05t0404500-01
Chr05	irgsp1_rep	five_prime_UTR	19700612	19700917	.	+	.	Parent=Os05t0404500-01
Chr05	irgsp1_rep	CDS	19700918	19701364	.	+	0	Parent=Os05t0404500-01
Chr05	irgsp1_rep	three_prime_UTR	19701365	19701709	.	+	.	Parent=Os05t0404500-01
Chr05	irgsp1_rep	three_prime_UTR	19701797	19701893	.	+	.	Parent=Os05t0404500-01
Chr05	irgsp1_rep	three_prime_UTR	19702001	19702170	.	+	.	Parent=Os05t0404500-01
Chr05	irgsp1_rep	three_prime_UTR	19702268	19702368	.	+	.	Parent=Os05t0404500-01
Chr05	irgsp1_rep	three_prime_UTR	19704288	19704404	.	+	.	Parent=Os05t0404500-01
Chr05	irgsp1_rep	mRNA	19702828	19703739	.	-	.	ID=Os05t0404600-01;Name=Os05t0404600-01;Locus_id=Os05g0404600;Note=Methyl-CpG DNA binding domain containing protein.;Transcript_evidence=AK105210 (DDBJ%2C Best hit);ORF_evidence=A4UQN2 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Methyl-CpG DNA binding (IPR001739),Zinc finger%2C CW-type (IPR011124),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=001-109-B03;Expression=AK105210;TENOR=Os05t0404600-01;KEGG=Os05t0404600-01
Chr05	irgsp1_rep	five_prime_UTR	19703521	19703739	.	-	.	Parent=Os05t0404600-01
Chr05	irgsp1_rep	CDS	19703014	19703520	.	-	0	Parent=Os05t0404600-01
Chr05	irgsp1_rep	three_prime_UTR	19702828	19703013	.	-	.	Parent=Os05t0404600-01
Chr05	irgsp1_rep	mRNA	19705359	19707432	.	-	.	ID=Os05t0404700-01;Name=Os05t0404700-01;Locus_id=Os05g0404700;Note=Similar to MBD1.;Transcript_evidence=AK242289 (DDBJ%2C Best hit);ORF_evidence=A4UQN2 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Methyl-CpG DNA binding (IPR001739),Zinc finger%2C CW-type (IPR011124),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J075190O04;TENOR=Os05t0404700-01;KEGG=Os05t0404700-01
Chr05	irgsp1_rep	five_prime_UTR	19707370	19707432	.	-	.	Parent=Os05t0404700-01
Chr05	irgsp1_rep	CDS	19707358	19707369	.	-	0	Parent=Os05t0404700-01
Chr05	irgsp1_rep	CDS	19705595	19706110	.	-	0	Parent=Os05t0404700-01
Chr05	irgsp1_rep	three_prime_UTR	19705359	19705594	.	-	.	Parent=Os05t0404700-01
Chr05	irgsp1_rep	mRNA	19715220	19715735	.	+	.	ID=Os05t0404901-00;Name=Os05t0404901-00;Locus_id=Os05g0404901;Note=Conserved hypothetical protein.;Transcript_evidence=CT837817 (DDBJ%2C Best hit);ORF_evidence=Q2QQA8 (UniProt);TENOR=Os05t0404901-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	19715220	19715237	.	+	.	Parent=Os05t0404901-00
Chr05	irgsp1_rep	CDS	19715238	19715360	.	+	0	Parent=Os05t0404901-00
Chr05	irgsp1_rep	three_prime_UTR	19715361	19715735	.	+	.	Parent=Os05t0404901-00
Chr05	irgsp1_rep	mRNA	19718538	19737605	.	-	.	ID=Os05t0405000-01;Name=Os05t0405000-01;Locus_id=Os05g0405000;RAP-DB Gene Symbol Synonym(s)=OsPPDKB%2C chOsPPDKB;RAP-DB Gene Name Synonym(s)=Pyruvate orthophosphate dikinase;CGSNL Gene Symbol=FLO4;CGSNL Gene Name=FLOURY ENDOSPERM 4;Oryzabase Gene Symbol Synonym(s)=FLO4-4%2C flo4%2C flo4-2%2C flo4-3%2C ppdk%2C OsPPDK%2C PPDK1%2C CPDK1%2C PPDKB%2C OsPPDKB%2C cyOsPPDKB%2C OsPBDK%2C PBDK%2C osppdkb%2C PPD;Oryzabase Gene Name Synonym(s)=floury endosperm4%2C floury endosperm 4%2C pyruvate orthophospate dikinase%2C "Pyruvate%2C phosphate dikinase 1%2C chloroplastic"%2C "Pyruvate%2C orthophosphate dikinase 1"%2C pyruvate orthophosphate dikinase%2C pyruvate orthophosphate dikinase B%2C cytosolic pyruvate orthophosphate dikinase%2C orthophosphate dikinase%2C Pyruvate phosphate dikinase;Note=Chloroplastic pyruvate orthophosphate dikinase (PPDK%2CEC 2.7.9.1)%2C Starch metabolism and structure;Transcript_evidence=AK068025;ORF_evidence=Q6AVA8;GO=Biological Process: pyruvate metabolic process (GO:0006090),Biological Process: phosphorylation (GO:0016310),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524),Molecular Function: kinase activity (GO:0016301),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772),Molecular Function: pyruvate%2C phosphate dikinase activity (GO:0050242);InterPro=ATP-grasp fold%2C subdomain 1 (IPR013815),Phosphohistidine domain superfamily (IPR036637),Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily (IPR015813),Pyruvate kinase-like domain superfamily (IPR040442),Pyruvate%2C phosphate dikinase (IPR010121),Pyruvate phosphate dikinase%2C PEP/pyruvate-binding (IPR002192),PEP-utilising enzyme%2C mobile domain (IPR008279),PEP-utilising enzyme%2C C-terminal (IPR000121),PEP-utilising enzyme%2C active site (IPR018274),PEP-utilising enzyme%2C conserved site (IPR023151);NIAS_FLcDNA=J013134L02;Manual Curation=June 19%2C 2019;Literature_PMID=30072633,29744589,15941402;Oryzabase=6002;Expression=AK068025;TENOR=Os05t0405000-01;KEGG=Os05t0405000-01 (EC:2.7.9.1);Subcellular location=chloroplast (GO:0009507)
Chr05	irgsp1_rep	five_prime_UTR	19737505	19737605	.	-	.	Parent=Os05t0405000-01
Chr05	irgsp1_rep	five_prime_UTR	19737343	19737388	.	-	.	Parent=Os05t0405000-01
Chr05	irgsp1_rep	CDS	19737118	19737342	.	-	0	Parent=Os05t0405000-01
Chr05	irgsp1_rep	CDS	19726254	19726310	.	-	0	Parent=Os05t0405000-01
Chr05	irgsp1_rep	CDS	19725915	19726148	.	-	0	Parent=Os05t0405000-01
Chr05	irgsp1_rep	CDS	19725661	19725798	.	-	0	Parent=Os05t0405000-01
Chr05	irgsp1_rep	CDS	19724040	19724202	.	-	0	Parent=Os05t0405000-01
Chr05	irgsp1_rep	CDS	19723687	19723922	.	-	2	Parent=Os05t0405000-01
Chr05	irgsp1_rep	CDS	19723374	19723502	.	-	0	Parent=Os05t0405000-01
Chr05	irgsp1_rep	CDS	19722902	19723081	.	-	0	Parent=Os05t0405000-01
Chr05	irgsp1_rep	CDS	19722154	19722291	.	-	0	Parent=Os05t0405000-01
Chr05	irgsp1_rep	CDS	19721801	19721965	.	-	0	Parent=Os05t0405000-01
Chr05	irgsp1_rep	CDS	19721505	19721666	.	-	0	Parent=Os05t0405000-01
Chr05	irgsp1_rep	CDS	19721276	19721365	.	-	0	Parent=Os05t0405000-01
Chr05	irgsp1_rep	CDS	19720960	19721098	.	-	0	Parent=Os05t0405000-01
Chr05	irgsp1_rep	CDS	19720416	19720593	.	-	2	Parent=Os05t0405000-01
Chr05	irgsp1_rep	CDS	19720134	19720263	.	-	1	Parent=Os05t0405000-01
Chr05	irgsp1_rep	CDS	19719723	19719851	.	-	0	Parent=Os05t0405000-01
Chr05	irgsp1_rep	CDS	19719340	19719477	.	-	0	Parent=Os05t0405000-01
Chr05	irgsp1_rep	CDS	19719088	19719165	.	-	0	Parent=Os05t0405000-01
Chr05	irgsp1_rep	CDS	19718909	19719000	.	-	0	Parent=Os05t0405000-01
Chr05	irgsp1_rep	CDS	19718785	19718827	.	-	1	Parent=Os05t0405000-01
Chr05	irgsp1_rep	three_prime_UTR	19718538	19718784	.	-	.	Parent=Os05t0405000-01
Chr05	irgsp1_rep	mRNA	19718538	19726410	.	-	.	ID=Os05t0405000-02;Name=Os05t0405000-02;Locus_id=Os05g0405000;RAP-DB Gene Symbol Synonym(s)=OsPPDKB%2C cyOsPPDKB%2C cyOsPPDK%2C FLO4-4%2C FLO4;RAP-DB Gene Name Synonym(s)=Pyruvate orthophosphate dikinase%2C cytosolic pyruvate orthophosphate dikinase%2C floury4-4%2C floury endosperm 4;CGSNL Gene Symbol=FLO4;CGSNL Gene Name=FLOURY ENDOSPERM 4;Oryzabase Gene Symbol Synonym(s)=FLO4-4%2C flo4%2C flo4-2%2C flo4-3%2C ppdk%2C OsPPDK%2C PPDK1%2C CPDK1%2C PPDKB%2C OsPPDKB%2C cyOsPPDKB%2C OsPBDK%2C PBDK%2C osppdkb%2C PPD;Oryzabase Gene Name Synonym(s)=floury endosperm4%2C floury endosperm 4%2C pyruvate orthophospate dikinase%2C "Pyruvate%2C phosphate dikinase 1%2C chloroplastic"%2C "Pyruvate%2C orthophosphate dikinase 1"%2C pyruvate orthophosphate dikinase%2C pyruvate orthophosphate dikinase B%2C cytosolic pyruvate orthophosphate dikinase%2C orthophosphate dikinase%2C Pyruvate phosphate dikinase;Note=Cytosolic pyruvate orthophosphate dikinase (PPDK%2CEC 2.7.9.1)%2C Starch metabolism and structure%2C Modulation of carbon flow for starch and lipid biosynthesis during grain filling;Transcript_evidence=AK101783,AK103898;ORF_evidence=Q6AVA8-2;GO=Biological Process: pyruvate metabolic process (GO:0006090),Biological Process: phosphorylation (GO:0016310),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524),Molecular Function: kinase activity (GO:0016301),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772),Molecular Function: pyruvate%2C phosphate dikinase activity (GO:0050242);InterPro=ATP-grasp fold%2C subdomain 1 (IPR013815),Phosphohistidine domain superfamily (IPR036637),Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily (IPR015813),Pyruvate kinase-like domain superfamily (IPR040442),Pyruvate%2C phosphate dikinase (IPR010121),Pyruvate phosphate dikinase%2C PEP/pyruvate-binding (IPR002192),PEP-utilising enzyme%2C mobile domain (IPR008279),PEP-utilising enzyme%2C C-terminal (IPR000121),PEP-utilising enzyme%2C active site (IPR018274),PEP-utilising enzyme%2C conserved site (IPR023151);NIAS_FLcDNA=J033065A07,J033150I16;Manual Curation=June 19%2C 2019;Literature_PMID=30072633,29744589,15941402;Oryzabase=6002;Expression=AK101783;TENOR=Os05t0405000-02;Subcellular location=cytoplasm (GO:0005737)
Chr05	irgsp1_rep	five_prime_UTR	19726341	19726410	.	-	.	Parent=Os05t0405000-02
Chr05	irgsp1_rep	CDS	19726254	19726340	.	-	0	Parent=Os05t0405000-02
Chr05	irgsp1_rep	CDS	19725915	19726148	.	-	0	Parent=Os05t0405000-02
Chr05	irgsp1_rep	CDS	19725661	19725798	.	-	0	Parent=Os05t0405000-02
Chr05	irgsp1_rep	CDS	19724040	19724202	.	-	0	Parent=Os05t0405000-02
Chr05	irgsp1_rep	CDS	19723687	19723922	.	-	2	Parent=Os05t0405000-02
Chr05	irgsp1_rep	CDS	19723374	19723502	.	-	0	Parent=Os05t0405000-02
Chr05	irgsp1_rep	CDS	19722902	19723081	.	-	0	Parent=Os05t0405000-02
Chr05	irgsp1_rep	CDS	19722154	19722291	.	-	0	Parent=Os05t0405000-02
Chr05	irgsp1_rep	CDS	19721801	19721965	.	-	0	Parent=Os05t0405000-02
Chr05	irgsp1_rep	CDS	19721505	19721666	.	-	0	Parent=Os05t0405000-02
Chr05	irgsp1_rep	CDS	19721276	19721365	.	-	0	Parent=Os05t0405000-02
Chr05	irgsp1_rep	CDS	19720960	19721098	.	-	0	Parent=Os05t0405000-02
Chr05	irgsp1_rep	CDS	19720416	19720593	.	-	2	Parent=Os05t0405000-02
Chr05	irgsp1_rep	CDS	19720134	19720263	.	-	1	Parent=Os05t0405000-02
Chr05	irgsp1_rep	CDS	19719723	19719851	.	-	0	Parent=Os05t0405000-02
Chr05	irgsp1_rep	CDS	19719340	19719477	.	-	0	Parent=Os05t0405000-02
Chr05	irgsp1_rep	CDS	19719088	19719165	.	-	0	Parent=Os05t0405000-02
Chr05	irgsp1_rep	CDS	19718909	19719000	.	-	0	Parent=Os05t0405000-02
Chr05	irgsp1_rep	CDS	19718785	19718827	.	-	1	Parent=Os05t0405000-02
Chr05	irgsp1_rep	three_prime_UTR	19718538	19718784	.	-	.	Parent=Os05t0405000-02
Chr05	irgsp1_rep	mRNA	19724483	19724602	.	+	.	ID=Os05t0405200-00;Name=Os05t0405200-00;Locus_id=Os05g0405200;Note=Non-protein coding transcript.;Transcript_evidence=EU947580 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0405200-00
Chr05	irgsp1_rep	exon	19724483	19724602	.	+	.	Parent=Os05t0405200-00
Chr05	irgsp1_rep	mRNA	19740260	19740804	.	+	.	ID=Os05t0405400-01;Name=Os05t0405400-01;Locus_id=Os05g0405400;Note=Hypothetical conserved gene.;Transcript_evidence=AK108019 (DDBJ%2C Best hit);ORF_evidence=XP_002439778.1 (RefSeq);NIAS_FLcDNA=002-136-A01;Expression=AK108019;TENOR=Os05t0405400-01;KEGG=Os05t0405400-01
Chr05	irgsp1_rep	five_prime_UTR	19740260	19740261	.	+	.	Parent=Os05t0405400-01
Chr05	irgsp1_rep	CDS	19740262	19740438	.	+	0	Parent=Os05t0405400-01
Chr05	irgsp1_rep	three_prime_UTR	19740439	19740804	.	+	.	Parent=Os05t0405400-01
Chr05	irgsp1_rep	mRNA	19742292	19744773	.	-	.	ID=Os05t0405500-01;Name=Os05t0405500-01;Locus_id=Os05g0405500;Note=Similar to CytoChrome P450 CYP721B4.;Transcript_evidence=AK243149 (DDBJ%2C Best hit);ORF_evidence=B6U7K2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J100032I21;TENOR=Os05t0405500-01;KEGG=Os05t0405500-01 (EC:1.14.15.3)
Chr05	irgsp1_rep	CDS	19744288	19744773	.	-	0	Parent=Os05t0405500-01
Chr05	irgsp1_rep	CDS	19743492	19743736	.	-	0	Parent=Os05t0405500-01
Chr05	irgsp1_rep	CDS	19743042	19743399	.	-	1	Parent=Os05t0405500-01
Chr05	irgsp1_rep	CDS	19742307	19742939	.	-	0	Parent=Os05t0405500-01
Chr05	irgsp1_rep	three_prime_UTR	19742292	19742306	.	-	.	Parent=Os05t0405500-01
Chr05	irgsp1_rep	mRNA	19756231	19758913	.	-	.	ID=Os05t0405600-01;Name=Os05t0405600-01;Locus_id=Os05g0405600;Note=Similar to CytoChrome P450 CYP721B4.;Transcript_evidence=AK288052 (DDBJ%2C Best hit);ORF_evidence=B6U7K2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J075151I09;TENOR=Os05t0405600-01;KEGG=Os05t0405600-01 (EC:1.14.15.3)
Chr05	irgsp1_rep	five_prime_UTR	19758831	19758913	.	-	.	Parent=Os05t0405600-01
Chr05	irgsp1_rep	CDS	19758318	19758830	.	-	0	Parent=Os05t0405600-01
Chr05	irgsp1_rep	CDS	19757464	19757708	.	-	0	Parent=Os05t0405600-01
Chr05	irgsp1_rep	CDS	19757028	19757385	.	-	1	Parent=Os05t0405600-01
Chr05	irgsp1_rep	CDS	19756524	19756940	.	-	0	Parent=Os05t0405600-01
Chr05	irgsp1_rep	three_prime_UTR	19756231	19756523	.	-	.	Parent=Os05t0405600-01
Chr05	irgsp1_rep	mRNA	19757990	19758913	.	-	.	ID=Os05t0405600-02;Name=Os05t0405600-02;Locus_id=Os05g0405600;Note=CytoChrome P450 family protein.;Transcript_evidence=AK111151 (DDBJ%2C Best hit);ORF_evidence=B6U7K2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);NIAS_FLcDNA=002-176-F04;Expression=AK111151;TENOR=Os05t0405600-02;KEGG=Os05t0405600-02
Chr05	irgsp1_rep	five_prime_UTR	19758831	19758913	.	-	.	Parent=Os05t0405600-02
Chr05	irgsp1_rep	CDS	19758294	19758830	.	-	0	Parent=Os05t0405600-02
Chr05	irgsp1_rep	three_prime_UTR	19757990	19758293	.	-	.	Parent=Os05t0405600-02
Chr05	irgsp1_rep	mRNA	19768783	19775018	.	+	.	ID=Os05t0405900-01;Name=Os05t0405900-01;Locus_id=Os05g0405900;CGSNL Gene Symbol=ATG18F;CGSNL Gene Name=AUTOPHAGY ASSOCIATED GENE 18F;Oryzabase Gene Symbol Synonym(s)=OsATG18f%2C OsWD40-118;Oryzabase Gene Name Synonym(s)=autophagy 18f;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK072244 (DDBJ%2C Best hit);ORF_evidence=Q6AVA5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40 repeat%2C subgroup (IPR019781),Breast carcinoma amplified sequence 3 (IPR022175);NIAS_FLcDNA=J023003F07;Oryzabase=9665;Expression=AK072244;TENOR=Os05t0405900-01;KEGG=Os05t0405900-01
Chr05	irgsp1_rep	five_prime_UTR	19768783	19769142	.	+	.	Parent=Os05t0405900-01
Chr05	irgsp1_rep	CDS	19769143	19769316	.	+	0	Parent=Os05t0405900-01
Chr05	irgsp1_rep	CDS	19770154	19770615	.	+	0	Parent=Os05t0405900-01
Chr05	irgsp1_rep	CDS	19770716	19771150	.	+	0	Parent=Os05t0405900-01
Chr05	irgsp1_rep	CDS	19771237	19771482	.	+	0	Parent=Os05t0405900-01
Chr05	irgsp1_rep	CDS	19771563	19772375	.	+	0	Parent=Os05t0405900-01
Chr05	irgsp1_rep	CDS	19772490	19772662	.	+	0	Parent=Os05t0405900-01
Chr05	irgsp1_rep	CDS	19773576	19773685	.	+	1	Parent=Os05t0405900-01
Chr05	irgsp1_rep	CDS	19773770	19774372	.	+	2	Parent=Os05t0405900-01
Chr05	irgsp1_rep	CDS	19774455	19774459	.	+	2	Parent=Os05t0405900-01
Chr05	irgsp1_rep	three_prime_UTR	19774460	19775018	.	+	.	Parent=Os05t0405900-01
Chr05	irgsp1_rep	mRNA	19771098	19774996	.	+	.	ID=Os05t0405900-02;Name=Os05t0405900-02;Locus_id=Os05g0405900;CGSNL Gene Symbol=ATG18F;CGSNL Gene Name=AUTOPHAGY ASSOCIATED GENE 18F;Oryzabase Gene Symbol Synonym(s)=OsATG18f%2C OsWD40-118;Oryzabase Gene Name Synonym(s)=autophagy 18f;Note=Hypothetical conserved gene.;Transcript_evidence=AK099795 (DDBJ%2C Best hit);ORF_evidence=B9FPJ6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40 repeat%2C subgroup (IPR019781),Breast carcinoma amplified sequence 3 (IPR022175);NIAS_FLcDNA=J013097F10;Oryzabase=9665;Expression=AK099795;TENOR=Os05t0405900-02;KEGG=Os05t0405900-02
Chr05	irgsp1_rep	five_prime_UTR	19771098	19771099	.	+	.	Parent=Os05t0405900-02
Chr05	irgsp1_rep	CDS	19771100	19771150	.	+	0	Parent=Os05t0405900-02
Chr05	irgsp1_rep	CDS	19771237	19771482	.	+	0	Parent=Os05t0405900-02
Chr05	irgsp1_rep	CDS	19771563	19772375	.	+	0	Parent=Os05t0405900-02
Chr05	irgsp1_rep	CDS	19772490	19772662	.	+	0	Parent=Os05t0405900-02
Chr05	irgsp1_rep	CDS	19773582	19773685	.	+	1	Parent=Os05t0405900-02
Chr05	irgsp1_rep	CDS	19773770	19774372	.	+	2	Parent=Os05t0405900-02
Chr05	irgsp1_rep	CDS	19774455	19774459	.	+	2	Parent=Os05t0405900-02
Chr05	irgsp1_rep	three_prime_UTR	19774460	19774996	.	+	.	Parent=Os05t0405900-02
Chr05	irgsp1_rep	mRNA	19773527	19774996	.	+	.	ID=Os05t0405900-03;Name=Os05t0405900-03;Locus_id=Os05g0405900;CGSNL Gene Symbol=ATG18F;CGSNL Gene Name=AUTOPHAGY ASSOCIATED GENE 18F;Oryzabase Gene Symbol Synonym(s)=OsATG18f%2C OsWD40-118;Oryzabase Gene Name Synonym(s)=autophagy 18f;Note=Conserved hypothetical protein.;Transcript_evidence=AK061891 (DDBJ%2C Best hit);ORF_evidence=Q6AVA5 (UniProt);NIAS_FLcDNA=001-041-G03;Oryzabase=9665;TENOR=Os05t0405900-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	19773527	19773528	.	+	.	Parent=Os05t0405900-03
Chr05	irgsp1_rep	CDS	19773529	19773685	.	+	0	Parent=Os05t0405900-03
Chr05	irgsp1_rep	CDS	19773770	19774372	.	+	2	Parent=Os05t0405900-03
Chr05	irgsp1_rep	CDS	19774455	19774459	.	+	2	Parent=Os05t0405900-03
Chr05	irgsp1_rep	three_prime_UTR	19774460	19774996	.	+	.	Parent=Os05t0405900-03
Chr05	irgsp1_rep	mRNA	19777945	19780020	.	+	.	ID=Os05t0406000-01;Name=Os05t0406000-01;Locus_id=Os05g0406000;Note=Conserved hypothetical protein.;Transcript_evidence=AK062289 (DDBJ%2C Best hit);ORF_evidence=B9FID6 (UniProt);NIAS_FLcDNA=001-100-E05;Expression=AK062289;TENOR=Os05t0406000-01;KEGG=Os05t0406000-01
Chr05	irgsp1_rep	five_prime_UTR	19777945	19777945	.	+	.	Parent=Os05t0406000-01
Chr05	irgsp1_rep	CDS	19777946	19778039	.	+	0	Parent=Os05t0406000-01
Chr05	irgsp1_rep	CDS	19778132	19778347	.	+	2	Parent=Os05t0406000-01
Chr05	irgsp1_rep	CDS	19779006	19779048	.	+	2	Parent=Os05t0406000-01
Chr05	irgsp1_rep	CDS	19779512	19779590	.	+	1	Parent=Os05t0406000-01
Chr05	irgsp1_rep	CDS	19779712	19779804	.	+	0	Parent=Os05t0406000-01
Chr05	irgsp1_rep	three_prime_UTR	19779805	19780020	.	+	.	Parent=Os05t0406000-01
Chr05	irgsp1_rep	mRNA	19780205	19784550	.	-	.	ID=Os05t0406100-01;Name=Os05t0406100-01;Locus_id=Os05g0406100;Note=Inosine/uridine-preferring nucleoside hydrolase domain containing protein.;Transcript_evidence=AK069515 (DDBJ%2C Best hit);ORF_evidence=B9FPJ7 (UniProt);InterPro=Inosine/uridine-preferring nucleoside hydrolase domain (IPR001910),Inosine/uridine-preferring nucleoside hydrolase (IPR023186);NIAS_FLcDNA=J023019G14;Expression=AK069515;TENOR=Os05t0406100-01;KEGG=Os05t0406100-01
Chr05	irgsp1_rep	five_prime_UTR	19784458	19784550	.	-	.	Parent=Os05t0406100-01
Chr05	irgsp1_rep	CDS	19784044	19784457	.	-	0	Parent=Os05t0406100-01
Chr05	irgsp1_rep	CDS	19783386	19783571	.	-	0	Parent=Os05t0406100-01
Chr05	irgsp1_rep	CDS	19782974	19783258	.	-	0	Parent=Os05t0406100-01
Chr05	irgsp1_rep	CDS	19782416	19782538	.	-	0	Parent=Os05t0406100-01
Chr05	irgsp1_rep	CDS	19782080	19782277	.	-	0	Parent=Os05t0406100-01
Chr05	irgsp1_rep	CDS	19781697	19781932	.	-	0	Parent=Os05t0406100-01
Chr05	irgsp1_rep	CDS	19781382	19781559	.	-	1	Parent=Os05t0406100-01
Chr05	irgsp1_rep	CDS	19780983	19781288	.	-	0	Parent=Os05t0406100-01
Chr05	irgsp1_rep	CDS	19780568	19780882	.	-	0	Parent=Os05t0406100-01
Chr05	irgsp1_rep	three_prime_UTR	19780205	19780567	.	-	.	Parent=Os05t0406100-01
Chr05	irgsp1_rep	mRNA	19780354	19784163	.	-	.	ID=Os05t0406100-02;Name=Os05t0406100-02;Locus_id=Os05g0406100;Note=Hypothetical conserved gene.;Transcript_evidence=AK070068 (DDBJ%2C Best hit);ORF_evidence=B9FPJ7 (UniProt);InterPro=Inosine/uridine-preferring nucleoside hydrolase domain (IPR001910),Inosine/uridine-preferring nucleoside hydrolase (IPR023186);NIAS_FLcDNA=J023041D03;Expression=AK070068;TENOR=Os05t0406100-02;KEGG=Os05t0406100-02
Chr05	irgsp1_rep	CDS	19784044	19784163	.	-	0	Parent=Os05t0406100-02
Chr05	irgsp1_rep	CDS	19783386	19783571	.	-	0	Parent=Os05t0406100-02
Chr05	irgsp1_rep	CDS	19782974	19783258	.	-	0	Parent=Os05t0406100-02
Chr05	irgsp1_rep	CDS	19782416	19782538	.	-	0	Parent=Os05t0406100-02
Chr05	irgsp1_rep	CDS	19782080	19782277	.	-	0	Parent=Os05t0406100-02
Chr05	irgsp1_rep	CDS	19781697	19781932	.	-	0	Parent=Os05t0406100-02
Chr05	irgsp1_rep	CDS	19781382	19781559	.	-	1	Parent=Os05t0406100-02
Chr05	irgsp1_rep	CDS	19780983	19781288	.	-	0	Parent=Os05t0406100-02
Chr05	irgsp1_rep	CDS	19780568	19780882	.	-	0	Parent=Os05t0406100-02
Chr05	irgsp1_rep	three_prime_UTR	19780354	19780567	.	-	.	Parent=Os05t0406100-02
Chr05	irgsp1_rep	mRNA	19780173	19781923	.	-	.	ID=Os05t0406100-03;Name=Os05t0406100-03;Locus_id=Os05g0406100;Note=Hypothetical conserved gene.;Transcript_evidence=AK066859 (DDBJ%2C Best hit);ORF_evidence=Q6L554 (UniProt);InterPro=Inosine/uridine-preferring nucleoside hydrolase domain (IPR001910),Inosine/uridine-preferring nucleoside hydrolase (IPR023186);NIAS_FLcDNA=J013079D14;Expression=AK066859;TENOR=Os05t0406100-03;KEGG=Os05t0406100-03
Chr05	irgsp1_rep	CDS	19781697	19781923	.	-	0	Parent=Os05t0406100-03
Chr05	irgsp1_rep	CDS	19781382	19781559	.	-	1	Parent=Os05t0406100-03
Chr05	irgsp1_rep	CDS	19780983	19781288	.	-	0	Parent=Os05t0406100-03
Chr05	irgsp1_rep	CDS	19780568	19780882	.	-	0	Parent=Os05t0406100-03
Chr05	irgsp1_rep	three_prime_UTR	19780173	19780567	.	-	.	Parent=Os05t0406100-03
Chr05	irgsp1_rep	mRNA	19780573	19785694	.	+	.	ID=Os05t0406150-00;Name=Os05t0406150-00;Locus_id=Os05g0406150;Note=Hypothetical protein.;Transcript_evidence=tplb0028p19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0406150-00
Chr05	irgsp1_rep	five_prime_UTR	19780573	19780879	.	+	.	Parent=Os05t0406150-00
Chr05	irgsp1_rep	five_prime_UTR	19780975	19781302	.	+	.	Parent=Os05t0406150-00
Chr05	irgsp1_rep	five_prime_UTR	19781393	19781534	.	+	.	Parent=Os05t0406150-00
Chr05	irgsp1_rep	five_prime_UTR	19781671	19781929	.	+	.	Parent=Os05t0406150-00
Chr05	irgsp1_rep	five_prime_UTR	19782077	19782254	.	+	.	Parent=Os05t0406150-00
Chr05	irgsp1_rep	five_prime_UTR	19782397	19782537	.	+	.	Parent=Os05t0406150-00
Chr05	irgsp1_rep	five_prime_UTR	19782973	19783249	.	+	.	Parent=Os05t0406150-00
Chr05	irgsp1_rep	five_prime_UTR	19783374	19783564	.	+	.	Parent=Os05t0406150-00
Chr05	irgsp1_rep	five_prime_UTR	19784031	19784170	.	+	.	Parent=Os05t0406150-00
Chr05	irgsp1_rep	CDS	19784171	19784428	.	+	0	Parent=Os05t0406150-00
Chr05	irgsp1_rep	CDS	19784707	19784877	.	+	0	Parent=Os05t0406150-00
Chr05	irgsp1_rep	CDS	19785520	19785525	.	+	0	Parent=Os05t0406150-00
Chr05	irgsp1_rep	three_prime_UTR	19785526	19785694	.	+	.	Parent=Os05t0406150-00
Chr05	irgsp1_rep	mRNA	19794864	19795172	.	-	.	ID=Os05t0406200-01;Name=Os05t0406200-01;Locus_id=Os05g0406200;Note=Non-protein coding transcript.;Transcript_evidence=AK287927 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065218M07;TENOR=Os05t0406200-01
Chr05	irgsp1_rep	exon	19794864	19795172	.	-	.	Parent=Os05t0406200-01
Chr05	irgsp1_rep	mRNA	19795128	19805706	.	+	.	ID=Os05t0406300-00;Name=Os05t0406300-00;Locus_id=Os05g0406300;Note=Hypothetical protein.;Transcript_evidence=tplb0028p19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0406300-00
Chr05	irgsp1_rep	five_prime_UTR	19795128	19795447	.	+	.	Parent=Os05t0406300-00
Chr05	irgsp1_rep	five_prime_UTR	19795821	19796140	.	+	.	Parent=Os05t0406300-00
Chr05	irgsp1_rep	five_prime_UTR	19796223	19796393	.	+	.	Parent=Os05t0406300-00
Chr05	irgsp1_rep	five_prime_UTR	19796505	19796745	.	+	.	Parent=Os05t0406300-00
Chr05	irgsp1_rep	five_prime_UTR	19796863	19797023	.	+	.	Parent=Os05t0406300-00
Chr05	irgsp1_rep	CDS	19797024	19797059	.	+	0	Parent=Os05t0406300-00
Chr05	irgsp1_rep	CDS	19798025	19798151	.	+	0	Parent=Os05t0406300-00
Chr05	irgsp1_rep	CDS	19798471	19798532	.	+	2	Parent=Os05t0406300-00
Chr05	irgsp1_rep	three_prime_UTR	19798533	19798768	.	+	.	Parent=Os05t0406300-00
Chr05	irgsp1_rep	three_prime_UTR	19798870	19799077	.	+	.	Parent=Os05t0406300-00
Chr05	irgsp1_rep	three_prime_UTR	19799941	19800138	.	+	.	Parent=Os05t0406300-00
Chr05	irgsp1_rep	three_prime_UTR	19800978	19801120	.	+	.	Parent=Os05t0406300-00
Chr05	irgsp1_rep	three_prime_UTR	19801234	19801409	.	+	.	Parent=Os05t0406300-00
Chr05	irgsp1_rep	three_prime_UTR	19805467	19805706	.	+	.	Parent=Os05t0406300-00
Chr05	irgsp1_rep	mRNA	19812529	19813912	.	-	.	ID=Os05t0406550-01;Name=Os05t0406550-01;Locus_id=Os05g0406550;Note=Protein of unknown function DUF3475 domain containing protein.;Transcript_evidence=AK241185 (DDBJ%2C Best hit);ORF_evidence=NP_001174420.1 (RefSeq);InterPro=Protein of unknown function DUF3475 (IPR021864);NIAS_FLcDNA=J065120D11;TENOR=Os05t0406550-01
Chr05	irgsp1_rep	five_prime_UTR	19813281	19813912	.	-	.	Parent=Os05t0406550-01
Chr05	irgsp1_rep	CDS	19812903	19813280	.	-	0	Parent=Os05t0406550-01
Chr05	irgsp1_rep	three_prime_UTR	19812529	19812902	.	-	.	Parent=Os05t0406550-01
Chr05	irgsp1_rep	mRNA	19814513	19815972	.	+	.	ID=Os05t0406700-01;Name=Os05t0406700-01;Locus_id=Os05g0406700;Note=Conserved hypothetical protein.;Transcript_evidence=AK111462 (DDBJ%2C Best hit);ORF_evidence=NP_001175144.1 (RefSeq);NIAS_FLcDNA=002-183-D02;TENOR=Os05t0406700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	19814513	19814514	.	+	.	Parent=Os05t0406700-01
Chr05	irgsp1_rep	CDS	19814515	19814556	.	+	0	Parent=Os05t0406700-01
Chr05	irgsp1_rep	CDS	19815231	19815512	.	+	0	Parent=Os05t0406700-01
Chr05	irgsp1_rep	three_prime_UTR	19815513	19815972	.	+	.	Parent=Os05t0406700-01
Chr05	irgsp1_rep	mRNA	19828480	19830827	.	+	.	ID=Os05t0406800-01;Name=Os05t0406800-01;Locus_id=Os05g0406800;Oryzabase Gene Name Synonym(s)=leucine-rich repeat (LRR)-containing protein;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=AK099640 (DDBJ%2C Best hit);ORF_evidence=XP_002889459.1 (RefSeq);InterPro=Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J013060B14;Oryzabase=22754;Expression=AK099640;TENOR=Os05t0406800-01;KEGG=Os05t0406800-01
Chr05	irgsp1_rep	five_prime_UTR	19828480	19829197	.	+	.	Parent=Os05t0406800-01
Chr05	irgsp1_rep	CDS	19829198	19830382	.	+	0	Parent=Os05t0406800-01
Chr05	irgsp1_rep	three_prime_UTR	19830383	19830827	.	+	.	Parent=Os05t0406800-01
Chr05	irgsp1_rep	mRNA	19829080	19830856	.	+	.	ID=Os05t0406800-02;Name=Os05t0406800-02;Locus_id=Os05g0406800;Oryzabase Gene Name Synonym(s)=leucine-rich repeat (LRR)-containing protein;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=AK062566 (DDBJ%2C Best hit);ORF_evidence=XP_002889459.1 (RefSeq);InterPro=Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=001-045-H08;Oryzabase=22754;Expression=AK062566;TENOR=Os05t0406800-02;KEGG=Os05t0406800-02
Chr05	irgsp1_rep	five_prime_UTR	19829080	19829197	.	+	.	Parent=Os05t0406800-02
Chr05	irgsp1_rep	CDS	19829198	19830382	.	+	0	Parent=Os05t0406800-02
Chr05	irgsp1_rep	three_prime_UTR	19830383	19830856	.	+	.	Parent=Os05t0406800-02
Chr05	irgsp1_rep	mRNA	19837789	19838522	.	+	.	ID=Os05t0407100-01;Name=Os05t0407100-01;Locus_id=Os05g0407100;Note=Four F5 protein family protein.;Transcript_evidence=AK063349 (DDBJ%2C Best hit);ORF_evidence=NP_849375.1 (RefSeq);InterPro=Uncharacterised protein family SERF (IPR007513);NIAS_FLcDNA=001-114-B11;Expression=AK063349;TENOR=Os05t0407100-01;KEGG=Os05t0407100-01
Chr05	irgsp1_rep	five_prime_UTR	19837789	19837921	.	+	.	Parent=Os05t0407100-01
Chr05	irgsp1_rep	CDS	19837922	19837927	.	+	0	Parent=Os05t0407100-01
Chr05	irgsp1_rep	CDS	19838141	19838301	.	+	0	Parent=Os05t0407100-01
Chr05	irgsp1_rep	CDS	19838355	19838406	.	+	1	Parent=Os05t0407100-01
Chr05	irgsp1_rep	three_prime_UTR	19838407	19838522	.	+	.	Parent=Os05t0407100-01
Chr05	irgsp1_rep	mRNA	19838548	19846592	.	-	.	ID=Os05t0407200-01;Name=Os05t0407200-01;Locus_id=Os05g0407200;Oryzabase Gene Symbol Synonym(s)=OsWD40-119;Note=WD repeat protein 23 domain containing protein.;Transcript_evidence=AK072186 (DDBJ%2C Best hit);ORF_evidence=NP_001147956.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD repeat protein 23 (IPR017399),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J013144D17;Oryzabase=10800;Expression=AK072186;TENOR=Os05t0407200-01;KEGG=Os05t0407200-01
Chr05	irgsp1_rep	five_prime_UTR	19846487	19846592	.	-	.	Parent=Os05t0407200-01
Chr05	irgsp1_rep	five_prime_UTR	19845429	19845510	.	-	.	Parent=Os05t0407200-01
Chr05	irgsp1_rep	CDS	19845048	19845428	.	-	0	Parent=Os05t0407200-01
Chr05	irgsp1_rep	CDS	19844818	19844937	.	-	0	Parent=Os05t0407200-01
Chr05	irgsp1_rep	CDS	19843169	19843246	.	-	0	Parent=Os05t0407200-01
Chr05	irgsp1_rep	CDS	19842644	19842820	.	-	0	Parent=Os05t0407200-01
Chr05	irgsp1_rep	CDS	19842444	19842521	.	-	0	Parent=Os05t0407200-01
Chr05	irgsp1_rep	CDS	19840985	19841157	.	-	0	Parent=Os05t0407200-01
Chr05	irgsp1_rep	CDS	19840748	19840903	.	-	1	Parent=Os05t0407200-01
Chr05	irgsp1_rep	CDS	19840576	19840636	.	-	1	Parent=Os05t0407200-01
Chr05	irgsp1_rep	CDS	19838835	19839002	.	-	0	Parent=Os05t0407200-01
Chr05	irgsp1_rep	three_prime_UTR	19838548	19838834	.	-	.	Parent=Os05t0407200-01
Chr05	irgsp1_rep	mRNA	19845750	19846524	.	-	.	ID=Os05t0407200-02;Name=Os05t0407200-02;Locus_id=Os05g0407200;Oryzabase Gene Symbol Synonym(s)=OsWD40-119;Note=Non-protein coding transcript.;Transcript_evidence=AK111298 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-181-A12;Oryzabase=10800;TENOR=Os05t0407200-02
Chr05	irgsp1_rep	exon	19845750	19846524	.	-	.	Parent=Os05t0407200-02
Chr05	irgsp1_rep	mRNA	19868485	19871283	.	+	.	ID=Os05t0407500-01;Name=Os05t0407500-01;Locus_id=Os05g0407500;RAP-DB Gene Symbol Synonym(s)=GID1%2C gid1%2C OsGID1%2C Thl%2C Os GID1;RAP-DB Gene Name Synonym(s)=GIBBERELLIN INSENSITIVE DWARF1%2C GIBBERELLIN-INSENSITIVE DWARF1%2C Gibberellin receptor GID1%2C Gibberellin-insensitive dwarf protein 1%2C Protein GIBBERELLIN INSENSITIVE DWARF1%2C Thumbelina%2C GA-insensitive dwarf 1;CGSNL Gene Symbol=GID1;CGSNL Gene Name=GIBBERELLIN INSENSITIVE DWARF1;Oryzabase Gene Symbol Synonym(s)=gid1%2C OsGID1%2C Thl%2C Os GID1;Oryzabase Gene Name Synonym(s)=GIBBERELLIN-INSENSITIVE DWARF1%2C Gibberellin receptor GID1%2C Gibberellin-insensitive dwarf protein 1%2C Protein GIBBERELLIN INSENSITIVE DWARF1%2C Thumbelina%2C GA-insensitive dwarf 1;Note=Soluble gibberellin receptor%2C Gibberellin signaling;Transcript_evidence=AB211399 (Taichung 65),AK074026;ORF_evidence=Q6L545;GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Alpha/Beta hydrolase fold (IPR029058),Alpha/beta hydrolase fold-3 (IPR013094),Lipase%2C GDXG%2C active site (IPR002168);NIAS_FLcDNA=J033079J03;Manual Curation=February 12%2C 2015;Literature_PMID=16193045;Oryzabase=7353;TENOR=Os05t0407500-01;KEGG=Os05t0407500-01
Chr05	irgsp1_rep	five_prime_UTR	19868485	19868906	.	+	.	Parent=Os05t0407500-01
Chr05	irgsp1_rep	CDS	19868907	19868945	.	+	0	Parent=Os05t0407500-01
Chr05	irgsp1_rep	CDS	19869589	19870614	.	+	0	Parent=Os05t0407500-01
Chr05	irgsp1_rep	three_prime_UTR	19870615	19871283	.	+	.	Parent=Os05t0407500-01
Chr05	irgsp1_rep	mRNA	19869420	19869856	.	-	.	ID=Os05t0407550-01;Name=Os05t0407550-01;Locus_id=Os05g0407550;Note=Hypothetical protein.;Transcript_evidence=AK111484 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-188-E07;TENOR=Os05t0407550-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	19869789	19869856	.	-	.	Parent=Os05t0407550-01
Chr05	irgsp1_rep	CDS	19869420	19869788	.	-	0	Parent=Os05t0407550-01
Chr05	irgsp1_rep	mRNA	19895140	19899954	.	-	.	ID=Os05t0407900-00;Name=Os05t0407900-00;Locus_id=Os05g0407900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK376638 (DDBJ);ORF_evidence=Q5TKC3 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);TENOR=Os05t0407900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	19899833	19899954	.	-	.	Parent=Os05t0407900-00
Chr05	irgsp1_rep	CDS	19898336	19899832	.	-	0	Parent=Os05t0407900-00
Chr05	irgsp1_rep	three_prime_UTR	19898333	19898335	.	-	.	Parent=Os05t0407900-00
Chr05	irgsp1_rep	three_prime_UTR	19895140	19895434	.	-	.	Parent=Os05t0407900-00
Chr05	irgsp1_rep	mRNA	19923167	19932333	.	+	.	ID=Os05t0408200-01;Name=Os05t0408200-01;Locus_id=Os05g0408200;RAP-DB Gene Symbol Synonym(s)=OsSPL9;RAP-DB Gene Name Synonym(s)=Squamosa promoter-binding-like protein 9;CGSNL Gene Symbol=SPL9;CGSNL Gene Name=RICE SQUAMOSA PROMOTER-BINDING-LIKE 9;Oryzabase Gene Symbol Synonym(s)=OsSPL9;Oryzabase Gene Name Synonym(s)=Squamosa promoter-binding-like protein 9;Note=Transcription factor%2C Transcriptional regulation of miR528%2C Antiviral response%2C Defense to rice  stripe  virus (RSV);Transcript_evidence=AK100057;ORF_evidence=Q6I576;GO=Molecular Function: DNA binding (GO:0003677),Cellular Component: nucleus (GO:0005634);InterPro=SBP domain superfamily (IPR036893),SBP domain (IPR004333);NIAS_FLcDNA=J013158B16;Manual Curation=May 14%2C 2019;Literature_PMID=31059826,31059825,27876244;Oryzabase=6892;Expression=AK100057;TENOR=Os05t0408200-01;KEGG=Os05t0408200-01;Subcellular location=nucleus (GO:0005634)
Chr05	irgsp1_rep	five_prime_UTR	19923167	19923400	.	+	.	Parent=Os05t0408200-01
Chr05	irgsp1_rep	CDS	19923401	19924050	.	+	0	Parent=Os05t0408200-01
Chr05	irgsp1_rep	CDS	19925548	19925720	.	+	1	Parent=Os05t0408200-01
Chr05	irgsp1_rep	CDS	19926154	19926407	.	+	2	Parent=Os05t0408200-01
Chr05	irgsp1_rep	CDS	19926510	19926584	.	+	0	Parent=Os05t0408200-01
Chr05	irgsp1_rep	CDS	19926676	19926783	.	+	0	Parent=Os05t0408200-01
Chr05	irgsp1_rep	CDS	19927159	19927276	.	+	0	Parent=Os05t0408200-01
Chr05	irgsp1_rep	CDS	19927592	19927727	.	+	2	Parent=Os05t0408200-01
Chr05	irgsp1_rep	CDS	19929868	19930042	.	+	1	Parent=Os05t0408200-01
Chr05	irgsp1_rep	CDS	19930578	19931105	.	+	0	Parent=Os05t0408200-01
Chr05	irgsp1_rep	CDS	19931869	19932180	.	+	0	Parent=Os05t0408200-01
Chr05	irgsp1_rep	three_prime_UTR	19932181	19932333	.	+	.	Parent=Os05t0408200-01
Chr05	irgsp1_rep	mRNA	19934675	19938244	.	-	.	ID=Os05t0408300-01;Name=Os05t0408300-01;Locus_id=Os05g0408300;Note=Similar to Lipase.;Transcript_evidence=AK068553 (DDBJ%2C Best hit);ORF_evidence=B6UAB9 (UniProt);NIAS_FLcDNA=J013155K07;Expression=AK068553;TENOR=Os05t0408300-01;KEGG=Os05t0408300-01
Chr05	irgsp1_rep	five_prime_UTR	19937830	19938244	.	-	.	Parent=Os05t0408300-01
Chr05	irgsp1_rep	CDS	19937551	19937829	.	-	0	Parent=Os05t0408300-01
Chr05	irgsp1_rep	CDS	19937357	19937451	.	-	0	Parent=Os05t0408300-01
Chr05	irgsp1_rep	CDS	19937026	19937129	.	-	1	Parent=Os05t0408300-01
Chr05	irgsp1_rep	CDS	19936580	19936680	.	-	2	Parent=Os05t0408300-01
Chr05	irgsp1_rep	CDS	19936045	19936145	.	-	0	Parent=Os05t0408300-01
Chr05	irgsp1_rep	CDS	19935512	19935949	.	-	1	Parent=Os05t0408300-01
Chr05	irgsp1_rep	CDS	19935246	19935377	.	-	1	Parent=Os05t0408300-01
Chr05	irgsp1_rep	CDS	19934841	19935006	.	-	1	Parent=Os05t0408300-01
Chr05	irgsp1_rep	three_prime_UTR	19934675	19934840	.	-	.	Parent=Os05t0408300-01
Chr05	irgsp1_rep	mRNA	19953263	19954346	.	-	.	ID=Os05t0408800-00;Name=Os05t0408800-00;Locus_id=Os05g0408800;Note=Similar to zinc finger%2C C3HC4 type family protein.;Transcript_evidence=EU964917 (DDBJ);ORF_evidence=NP_001149860.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os05t0408800-00;KEGG=Os05t0408800-00
Chr05	irgsp1_rep	five_prime_UTR	19954258	19954346	.	-	.	Parent=Os05t0408800-00
Chr05	irgsp1_rep	CDS	19953382	19954257	.	-	0	Parent=Os05t0408800-00
Chr05	irgsp1_rep	three_prime_UTR	19953263	19953381	.	-	.	Parent=Os05t0408800-00
Chr05	irgsp1_rep	mRNA	19953299	19954560	.	+	.	ID=Os05t0408850-00;Name=Os05t0408850-00;Locus_id=Os05g0408850;Note=Hypothetical gene.;Transcript_evidence=CT836350 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os05t0408850-00;KEGG=Os05t0408850-00
Chr05	irgsp1_rep	five_prime_UTR	19953299	19953534	.	+	.	Parent=Os05t0408850-00
Chr05	irgsp1_rep	CDS	19953535	19954218	.	+	0	Parent=Os05t0408850-00
Chr05	irgsp1_rep	three_prime_UTR	19954219	19954348	.	+	.	Parent=Os05t0408850-00
Chr05	irgsp1_rep	three_prime_UTR	19954379	19954560	.	+	.	Parent=Os05t0408850-00
Chr05	irgsp1_rep	mRNA	19961558	19963120	.	-	.	ID=Os05t0408900-01;Name=Os05t0408900-01;Locus_id=Os05g0408900;CGSNL Gene Symbol=DXS1;CGSNL Gene Name=1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 1;Oryzabase Gene Symbol Synonym(s)=CLA1%2C OsDXS1%2C dxs1%2C OsDXS%2C DXS%2C OsTKL1%2C TKL1;Oryzabase Gene Name Synonym(s)=CLA1 transketolase-like protein%2C 1-Deoxy-D-xylulose 5-phosphate synthase 1%2C transketolase 1;Note=Similar to 1-deoxy-D-xylulose-5-phosphate synthase.;Transcript_evidence=AK059821 (DDBJ%2C Best hit);ORF_evidence=B6SSS2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C disulfide as acceptor (GO:0016624);InterPro=Dehydrogenase%2C E1 component (IPR001017),Transketolase%2C N-terminal (IPR005474);NIAS_FLcDNA=006-205-D11;Oryzabase=13778;Expression=AK059821;TENOR=Os05t0408900-01;KEGG=Os05t0408900-01 (EC:2.2.1.7)
Chr05	irgsp1_rep	five_prime_UTR	19962884	19963120	.	-	.	Parent=Os05t0408900-01
Chr05	irgsp1_rep	CDS	19962761	19962883	.	-	0	Parent=Os05t0408900-01
Chr05	irgsp1_rep	CDS	19962368	19962673	.	-	0	Parent=Os05t0408900-01
Chr05	irgsp1_rep	CDS	19962103	19962253	.	-	0	Parent=Os05t0408900-01
Chr05	irgsp1_rep	CDS	19961674	19962011	.	-	2	Parent=Os05t0408900-01
Chr05	irgsp1_rep	three_prime_UTR	19961558	19961673	.	-	.	Parent=Os05t0408900-01
Chr05	irgsp1_rep	mRNA	19961413	19963048	.	-	.	ID=Os05t0408900-02;Name=Os05t0408900-02;Locus_id=Os05g0408900;CGSNL Gene Symbol=DXS1;CGSNL Gene Name=1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 1;Oryzabase Gene Symbol Synonym(s)=CLA1%2C OsDXS1%2C dxs1%2C OsDXS%2C DXS%2C OsTKL1%2C TKL1;Oryzabase Gene Name Synonym(s)=CLA1 transketolase-like protein%2C 1-Deoxy-D-xylulose 5-phosphate synthase 1%2C transketolase 1;Note=Similar to 1-deoxy-D-xylulose-5-phosphate synthase.;Transcript_evidence=AK058950 (DDBJ%2C Best hit),AK106750 (DDBJ%2C Best hit);ORF_evidence=B6SSS2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C disulfide as acceptor (GO:0016624);InterPro=Dehydrogenase%2C E1 component (IPR001017),Transketolase%2C N-terminal (IPR005474);NIAS_FLcDNA=001-020-A07,002-115-C09;Oryzabase=13778;Expression=AK058950;TENOR=Os05t0408900-02;KEGG=Os05t0408900-02 (EC:2.2.1.7)
Chr05	irgsp1_rep	five_prime_UTR	19962884	19963048	.	-	.	Parent=Os05t0408900-02
Chr05	irgsp1_rep	CDS	19962761	19962883	.	-	0	Parent=Os05t0408900-02
Chr05	irgsp1_rep	CDS	19962368	19962673	.	-	0	Parent=Os05t0408900-02
Chr05	irgsp1_rep	CDS	19962103	19962253	.	-	0	Parent=Os05t0408900-02
Chr05	irgsp1_rep	CDS	19961674	19962011	.	-	2	Parent=Os05t0408900-02
Chr05	irgsp1_rep	three_prime_UTR	19961413	19961673	.	-	.	Parent=Os05t0408900-02
Chr05	irgsp1_rep	mRNA	19957171	19963042	.	-	.	ID=Os05t0408900-03;Name=Os05t0408900-03;Locus_id=Os05g0408900;CGSNL Gene Symbol=DXS1;CGSNL Gene Name=1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 1;Oryzabase Gene Symbol Synonym(s)=CLA1%2C OsDXS1%2C dxs1%2C OsDXS%2C DXS%2C OsTKL1%2C TKL1;Oryzabase Gene Name Synonym(s)=CLA1 transketolase-like protein%2C 1-Deoxy-D-xylulose 5-phosphate synthase 1%2C transketolase 1;Note=Similar to 1-D-deoxyxylulose 5-phosphate synthase.;Transcript_evidence=AK064944 (DDBJ%2C Best hit);ORF_evidence=B6SSS2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: terpenoid biosynthetic process (GO:0016114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: 1-deoxy-D-xylulose-5-phosphate synthase activity (GO:0008661),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C disulfide as acceptor (GO:0016624);InterPro=Dehydrogenase%2C E1 component (IPR001017),Transketolase%2C N-terminal (IPR005474),Transketolase-like%2C pyrimidine-binding domain (IPR005475),Transketolase%2C C-terminal (IPR005476),Deoxyxylulose-5-phosphate synthase (IPR005477),Transketolase%2C C-terminal/Pyruvate-ferredoxin oxidoreductase%2C domain II (IPR009014),Transketolase-like%2C C-terminal (IPR015941),Transketolase binding site (IPR020826);NIAS_FLcDNA=J013000P14;Oryzabase=13778;TENOR=Os05t0408900-03
Chr05	irgsp1_rep	five_prime_UTR	19962884	19963042	.	-	.	Parent=Os05t0408900-03
Chr05	irgsp1_rep	CDS	19962761	19962883	.	-	0	Parent=Os05t0408900-03
Chr05	irgsp1_rep	CDS	19962368	19962673	.	-	0	Parent=Os05t0408900-03
Chr05	irgsp1_rep	CDS	19962103	19962253	.	-	0	Parent=Os05t0408900-03
Chr05	irgsp1_rep	CDS	19961740	19962011	.	-	2	Parent=Os05t0408900-03
Chr05	irgsp1_rep	CDS	19958899	19959172	.	-	0	Parent=Os05t0408900-03
Chr05	irgsp1_rep	CDS	19958469	19958776	.	-	2	Parent=Os05t0408900-03
Chr05	irgsp1_rep	CDS	19958095	19958376	.	-	0	Parent=Os05t0408900-03
Chr05	irgsp1_rep	CDS	19957709	19957993	.	-	0	Parent=Os05t0408900-03
Chr05	irgsp1_rep	CDS	19957424	19957585	.	-	0	Parent=Os05t0408900-03
Chr05	irgsp1_rep	three_prime_UTR	19957171	19957423	.	-	.	Parent=Os05t0408900-03
Chr05	irgsp1_rep	mRNA	19957184	19963002	.	-	.	ID=Os05t0408900-04;Name=Os05t0408900-04;Locus_id=Os05g0408900;CGSNL Gene Symbol=DXS1;CGSNL Gene Name=1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 1;Oryzabase Gene Symbol Synonym(s)=CLA1%2C OsDXS1%2C dxs1%2C OsDXS%2C DXS%2C OsTKL1%2C TKL1;Oryzabase Gene Name Synonym(s)=CLA1 transketolase-like protein%2C 1-Deoxy-D-xylulose 5-phosphate synthase 1%2C transketolase 1;Note=Similar to 1-D-deoxyxylulose 5-phosphate synthase.;Transcript_evidence=AK104851 (DDBJ%2C Best hit);ORF_evidence=B6SSS2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: terpenoid biosynthetic process (GO:0016114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: 1-deoxy-D-xylulose-5-phosphate synthase activity (GO:0008661),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C disulfide as acceptor (GO:0016624);InterPro=Dehydrogenase%2C E1 component (IPR001017),Transketolase%2C N-terminal (IPR005474),Transketolase-like%2C pyrimidine-binding domain (IPR005475),Transketolase%2C C-terminal (IPR005476),Deoxyxylulose-5-phosphate synthase (IPR005477),Transketolase%2C C-terminal/Pyruvate-ferredoxin oxidoreductase%2C domain II (IPR009014),Transketolase-like%2C C-terminal (IPR015941),Transketolase binding site (IPR020826);NIAS_FLcDNA=001-043-A10;Oryzabase=13778;Expression=AK106750;TENOR=Os05t0408900-04;KEGG=Os05t0408900-04 (EC:2.2.1.7);B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	19962884	19963002	.	-	.	Parent=Os05t0408900-04
Chr05	irgsp1_rep	CDS	19962761	19962883	.	-	0	Parent=Os05t0408900-04
Chr05	irgsp1_rep	CDS	19962368	19962673	.	-	0	Parent=Os05t0408900-04
Chr05	irgsp1_rep	CDS	19962103	19962253	.	-	0	Parent=Os05t0408900-04
Chr05	irgsp1_rep	CDS	19961740	19962011	.	-	2	Parent=Os05t0408900-04
Chr05	irgsp1_rep	CDS	19958899	19959172	.	-	0	Parent=Os05t0408900-04
Chr05	irgsp1_rep	CDS	19958469	19958776	.	-	2	Parent=Os05t0408900-04
Chr05	irgsp1_rep	CDS	19958095	19958376	.	-	0	Parent=Os05t0408900-04
Chr05	irgsp1_rep	CDS	19957709	19957993	.	-	0	Parent=Os05t0408900-04
Chr05	irgsp1_rep	CDS	19957424	19957585	.	-	0	Parent=Os05t0408900-04
Chr05	irgsp1_rep	three_prime_UTR	19957184	19957423	.	-	.	Parent=Os05t0408900-04
Chr05	irgsp1_rep	mRNA	19968873	19973524	.	-	.	ID=Os05t0409000-01;Name=Os05t0409000-01;Locus_id=Os05g0409000;Note=UBA-like domain containing protein.;Transcript_evidence=AK065999 (DDBJ%2C Best hit);ORF_evidence=B9FPK4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=UBA-like (IPR009060),Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (IPR015940);NIAS_FLcDNA=J013046D21;TENOR=Os05t0409000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	19973524	19973524	.	-	.	Parent=Os05t0409000-01
Chr05	irgsp1_rep	CDS	19973340	19973523	.	-	0	Parent=Os05t0409000-01
Chr05	irgsp1_rep	CDS	19969351	19971233	.	-	2	Parent=Os05t0409000-01
Chr05	irgsp1_rep	three_prime_UTR	19968873	19969350	.	-	.	Parent=Os05t0409000-01
Chr05	irgsp1_rep	mRNA	19969131	19973495	.	+	.	ID=Os05t0409050-00;Name=Os05t0409050-00;Locus_id=Os05g0409050;Note=Non-protein coding transcript.;Transcript_evidence=tplb0047c02 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os05t0409050-00
Chr05	irgsp1_rep	exon	19969131	19971224	.	+	.	Parent=Os05t0409050-00
Chr05	irgsp1_rep	exon	19973331	19973495	.	+	.	Parent=Os05t0409050-00
Chr05	irgsp1_rep	mRNA	19977308	19978339	.	+	.	ID=Os05t0409100-00;Name=Os05t0409100-00;Locus_id=Os05g0409100;Note=Similar to predicted protein.;Transcript_evidence=EU966553 (DDBJ);ORF_evidence=NP_001055526.1 (RefSeq);TENOR=Os05t0409100-00;KEGG=Os05t0409100-00
Chr05	irgsp1_rep	CDS	19977308	19978339	.	+	0	Parent=Os05t0409100-00
Chr05	irgsp1_rep	mRNA	19981911	19982462	.	+	.	ID=Os05t0409200-00;Name=Os05t0409200-00;Locus_id=Os05g0409200;Note=Hypothetical conserved gene.;Transcript_evidence=EU946500 (DDBJ);ORF_evidence=B6T5J4 (UniProt);InterPro=Leucine-rich repeat%2C ribonuclease inhibitor subtype (IPR003590);TENOR=Os05t0409200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	19981911	19981916	.	+	.	Parent=Os05t0409200-00
Chr05	irgsp1_rep	CDS	19981917	19982240	.	+	0	Parent=Os05t0409200-00
Chr05	irgsp1_rep	three_prime_UTR	19982241	19982462	.	+	.	Parent=Os05t0409200-00
Chr05	irgsp1_rep	mRNA	19983778	19987664	.	+	.	ID=Os05t0409300-01;Name=Os05t0409300-01;Locus_id=Os05g0409300;Note=Similar to Cysteine protease inhibitor.;Transcript_evidence=AK065214 (DDBJ%2C Best hit);ORF_evidence=Q1ENF5 (UniProt);GO=Molecular Function: cysteine-type endopeptidase inhibitor activity (GO:0004869);InterPro=Proteinase inhibitor I25%2C cystatin (IPR000010),Proteinase inhibitor I25%2C cystatin%2C conserved region (IPR020381);NIAS_FLcDNA=J013002G04;Expression=AK065214;TENOR=Os05t0409300-01;KEGG=Os05t0409300-01
Chr05	irgsp1_rep	five_prime_UTR	19983778	19983841	.	+	.	Parent=Os05t0409300-01
Chr05	irgsp1_rep	CDS	19983842	19984066	.	+	0	Parent=Os05t0409300-01
Chr05	irgsp1_rep	CDS	19986127	19986352	.	+	0	Parent=Os05t0409300-01
Chr05	irgsp1_rep	CDS	19986739	19986827	.	+	2	Parent=Os05t0409300-01
Chr05	irgsp1_rep	CDS	19987353	19987367	.	+	0	Parent=Os05t0409300-01
Chr05	irgsp1_rep	three_prime_UTR	19987368	19987664	.	+	.	Parent=Os05t0409300-01
Chr05	irgsp1_rep	mRNA	19986124	19987626	.	+	.	ID=Os05t0409300-02;Name=Os05t0409300-02;Locus_id=Os05g0409300;Note=Similar to Cystatin Hv-CPI3.;Transcript_evidence=AK062014 (DDBJ%2C Best hit);ORF_evidence=Q1ENF5 (UniProt);GO=Molecular Function: cysteine-type endopeptidase inhibitor activity (GO:0004869);InterPro=Proteinase inhibitor I25%2C cystatin (IPR000010),Proteinase inhibitor I25%2C cystatin%2C conserved region (IPR020381);NIAS_FLcDNA=001-043-F04;Expression=AK062014;TENOR=Os05t0409300-02;KEGG=Os05t0409300-02
Chr05	irgsp1_rep	CDS	19986124	19986352	.	+	0	Parent=Os05t0409300-02
Chr05	irgsp1_rep	CDS	19986739	19986827	.	+	2	Parent=Os05t0409300-02
Chr05	irgsp1_rep	CDS	19987353	19987367	.	+	0	Parent=Os05t0409300-02
Chr05	irgsp1_rep	three_prime_UTR	19987368	19987626	.	+	.	Parent=Os05t0409300-02
Chr05	irgsp1_rep	mRNA	19988759	19994090	.	+	.	ID=Os05t0409400-01;Name=Os05t0409400-01;Locus_id=Os05g0409400;Note=Similar to Microtubule-associated protein MAP65-1a.;Transcript_evidence=AK102597 (DDBJ%2C Best hit);ORF_evidence=B6TSQ5 (UniProt);InterPro=Microtubule-associated protein%2C MAP65/ASE1-type (IPR007145);NIAS_FLcDNA=J033098J24;TENOR=Os05t0409400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	19988759	19988805	.	+	.	Parent=Os05t0409400-01
Chr05	irgsp1_rep	CDS	19988806	19988961	.	+	0	Parent=Os05t0409400-01
Chr05	irgsp1_rep	CDS	19989429	19989632	.	+	0	Parent=Os05t0409400-01
Chr05	irgsp1_rep	CDS	19989708	19989962	.	+	0	Parent=Os05t0409400-01
Chr05	irgsp1_rep	CDS	19990041	19990256	.	+	0	Parent=Os05t0409400-01
Chr05	irgsp1_rep	CDS	19990856	19991011	.	+	0	Parent=Os05t0409400-01
Chr05	irgsp1_rep	CDS	19991125	19991284	.	+	0	Parent=Os05t0409400-01
Chr05	irgsp1_rep	CDS	19992034	19992185	.	+	2	Parent=Os05t0409400-01
Chr05	irgsp1_rep	CDS	19992301	19992388	.	+	0	Parent=Os05t0409400-01
Chr05	irgsp1_rep	CDS	19992800	19992871	.	+	2	Parent=Os05t0409400-01
Chr05	irgsp1_rep	CDS	19992957	19993033	.	+	2	Parent=Os05t0409400-01
Chr05	irgsp1_rep	CDS	19993411	19993689	.	+	0	Parent=Os05t0409400-01
Chr05	irgsp1_rep	three_prime_UTR	19993690	19994090	.	+	.	Parent=Os05t0409400-01
Chr05	irgsp1_rep	mRNA	19997585	19999679	.	-	.	ID=Os05t0409500-00;Name=Os05t0409500-00;Locus_id=Os05g0409500;CGSNL Gene Symbol=UMAMIT9;CGSNL Gene Name=USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 9;Oryzabase Gene Symbol Synonym(s)=OsUMAMIT9;Oryzabase Gene Name Synonym(s)=Usually Multiple Acids Move In and out Transporter 9;Note=Similar to MtN21 protein.;Transcript_evidence=BT084636 (DDBJ);ORF_evidence=NP_001150619.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);Oryzabase=21377;TENOR=Os05t0409500-00;KEGG=Os05t0409500-00
Chr05	irgsp1_rep	CDS	19999186	19999679	.	-	0	Parent=Os05t0409500-00
Chr05	irgsp1_rep	CDS	19998709	19999078	.	-	1	Parent=Os05t0409500-00
Chr05	irgsp1_rep	CDS	19998436	19998594	.	-	0	Parent=Os05t0409500-00
Chr05	irgsp1_rep	CDS	19998187	19998338	.	-	0	Parent=Os05t0409500-00
Chr05	irgsp1_rep	CDS	19997801	19998089	.	-	1	Parent=Os05t0409500-00
Chr05	irgsp1_rep	three_prime_UTR	19997585	19997800	.	-	.	Parent=Os05t0409500-00
Chr05	irgsp1_rep	mRNA	20028056	20029354	.	+	.	ID=Os05t0409800-00;Name=Os05t0409800-00;Locus_id=Os05g0409800;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=BT033502 (DDBJ);ORF_evidence=NP_001055530.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os05t0409800-00;KEGG=Os05t0409800-00
Chr05	irgsp1_rep	CDS	20028056	20029354	.	+	0	Parent=Os05t0409800-00
Chr05	irgsp1_rep	mRNA	20037796	20039283	.	-	.	ID=Os05t0410100-01;Name=Os05t0410100-01;Locus_id=Os05g0410100;Note=Hypothetical protein.;Transcript_evidence=AK108696 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-149-G03;Expression=AK108696;TENOR=Os05t0410100-01;KEGG=Os05t0410100-01
Chr05	irgsp1_rep	five_prime_UTR	20039120	20039283	.	-	.	Parent=Os05t0410100-01
Chr05	irgsp1_rep	CDS	20038502	20039119	.	-	0	Parent=Os05t0410100-01
Chr05	irgsp1_rep	three_prime_UTR	20037796	20038501	.	-	.	Parent=Os05t0410100-01
Chr05	irgsp1_rep	mRNA	20038069	20039445	.	+	.	ID=Os05t0410200-01;Name=Os05t0410200-01;Locus_id=Os05g0410200;CGSNL Gene Symbol=HSR203J;CGSNL Gene Name=HYPERSENSITIVE-RELATED PROTEIN 203J;Oryzabase Gene Symbol Synonym(s)=OsHSR203J;Oryzabase Gene Name Synonym(s)=Hypersensitive-related protein 203J;Note=Alpha/beta hydrolase fold-3 domain containing protein.;Transcript_evidence=AK058526 (DDBJ%2C Best hit),AK072435 (DDBJ%2C Best hit);ORF_evidence=NP_001152160.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=001-017-A02,J023096F07;Oryzabase=11671;Expression=AK058526;TENOR=Os05t0410200-01;KEGG=Os05t0410200-01
Chr05	irgsp1_rep	five_prime_UTR	20038069	20038139	.	+	.	Parent=Os05t0410200-01
Chr05	irgsp1_rep	CDS	20038140	20039228	.	+	0	Parent=Os05t0410200-01
Chr05	irgsp1_rep	three_prime_UTR	20039229	20039445	.	+	.	Parent=Os05t0410200-01
Chr05	irgsp1_rep	mRNA	20045195	20049272	.	-	.	ID=Os05t0410500-01;Name=Os05t0410500-01;Locus_id=Os05g0410500;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=TGF-beta receptor%2C type I/II extracellular region family protein.;Transcript_evidence=AK110441 (DDBJ%2C Best hit);ORF_evidence=NP_001147810.1 (RefSeq);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=002-166-D04;Oryzabase=23661;Expression=AK110441;TENOR=Os05t0410500-01;KEGG=Os05t0410500-01
Chr05	irgsp1_rep	five_prime_UTR	20049269	20049272	.	-	.	Parent=Os05t0410500-01
Chr05	irgsp1_rep	CDS	20048430	20049268	.	-	0	Parent=Os05t0410500-01
Chr05	irgsp1_rep	CDS	20045499	20046399	.	-	1	Parent=Os05t0410500-01
Chr05	irgsp1_rep	three_prime_UTR	20045195	20045498	.	-	.	Parent=Os05t0410500-01
Chr05	irgsp1_rep	mRNA	20045545	20049253	.	+	.	ID=Os05t0410601-00;Name=Os05t0410601-00;Locus_id=Os05g0410601;Note=Hypothetical protein.;Transcript_evidence=tplb0038k08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0410601-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	20045545	20046147	.	+	.	Parent=Os05t0410601-00
Chr05	irgsp1_rep	CDS	20046148	20046426	.	+	0	Parent=Os05t0410601-00
Chr05	irgsp1_rep	CDS	20048450	20049253	.	+	0	Parent=Os05t0410601-00
Chr05	irgsp1_rep	mRNA	20085283	20087018	.	-	.	ID=Os05t0410750-00;Name=Os05t0410750-00;Locus_id=Os05g0410750;Note=Hypothetical protein.;Transcript_evidence=tplb0038k08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0410750-00
Chr05	irgsp1_rep	five_prime_UTR	20086458	20087018	.	-	.	Parent=Os05t0410750-00
Chr05	irgsp1_rep	CDS	20086182	20086457	.	-	0	Parent=Os05t0410750-00
Chr05	irgsp1_rep	CDS	20085283	20086068	.	-	0	Parent=Os05t0410750-00
Chr05	irgsp1_rep	mRNA	20086443	20087179	.	+	.	ID=Os05t0410800-01;Name=Os05t0410800-01;Locus_id=Os05g0410800;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=TGF-beta receptor%2C type I/II extracellular region family protein.;Transcript_evidence=AK108312 (DDBJ%2C Best hit);ORF_evidence=NP_001147810.1 (RefSeq);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=002-141-G01;Oryzabase=23662;Expression=AK108312;TENOR=Os05t0410800-01;KEGG=Os05t0410800-01
Chr05	irgsp1_rep	five_prime_UTR	20086443	20086443	.	+	.	Parent=Os05t0410800-01
Chr05	irgsp1_rep	CDS	20086444	20087112	.	+	0	Parent=Os05t0410800-01
Chr05	irgsp1_rep	three_prime_UTR	20087113	20087179	.	+	.	Parent=Os05t0410800-01
Chr05	irgsp1_rep	mRNA	20087194	20091534	.	-	.	ID=Os05t0410900-02;Name=Os05t0410900-02;Locus_id=Os05g0410900;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Similar to peptide transporter PTR2.;Transcript_evidence=AK070558 (DDBJ%2C Best hit),AK119621 (DDBJ%2C Best hit);ORF_evidence=NP_001147810.1 (RefSeq);NIAS_FLcDNA=J023060I20,002-117-H03;Oryzabase=23663;TENOR=Os05t0410900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	20091429	20091534	.	-	.	Parent=Os05t0410900-02
Chr05	irgsp1_rep	CDS	20091332	20091428	.	-	0	Parent=Os05t0410900-02
Chr05	irgsp1_rep	CDS	20088485	20089277	.	-	2	Parent=Os05t0410900-02
Chr05	irgsp1_rep	CDS	20087499	20088405	.	-	1	Parent=Os05t0410900-02
Chr05	irgsp1_rep	three_prime_UTR	20087194	20087498	.	-	.	Parent=Os05t0410900-02
Chr05	irgsp1_rep	mRNA	20099104	20101168	.	+	.	ID=Os05t0411100-00;Name=Os05t0411100-00;Locus_id=Os05g0411100;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Similar to peptide transporter PTR2.;Transcript_evidence=BT043032 (DDBJ);ORF_evidence=NP_001147810.1 (RefSeq);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);Oryzabase=23664;TENOR=Os05t0411100-00;KEGG=Os05t0411100-00
Chr05	irgsp1_rep	five_prime_UTR	20099104	20099149	.	+	.	Parent=Os05t0411100-00
Chr05	irgsp1_rep	CDS	20099150	20099231	.	+	0	Parent=Os05t0411100-00
Chr05	irgsp1_rep	CDS	20099321	20100134	.	+	2	Parent=Os05t0411100-00
Chr05	irgsp1_rep	CDS	20100208	20101168	.	+	1	Parent=Os05t0411100-00
Chr05	irgsp1_rep	mRNA	20099320	20101021	.	-	.	ID=Os05t0411150-00;Name=Os05t0411150-00;Locus_id=Os05g0411150;Note=Hypothetical protein.;Transcript_evidence=tplb0038k08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0411150-00
Chr05	irgsp1_rep	five_prime_UTR	20100832	20101021	.	-	.	Parent=Os05t0411150-00
Chr05	irgsp1_rep	CDS	20100496	20100831	.	-	0	Parent=Os05t0411150-00
Chr05	irgsp1_rep	three_prime_UTR	20100235	20100495	.	-	.	Parent=Os05t0411150-00
Chr05	irgsp1_rep	three_prime_UTR	20099320	20100160	.	-	.	Parent=Os05t0411150-00
Chr05	irgsp1_rep	mRNA	20102713	20112210	.	-	.	ID=Os05t0411200-01;Name=Os05t0411200-01;Locus_id=Os05g0411200;RAP-DB Gene Symbol Synonym(s)=TCD5;CGSNL Gene Symbol=TCD5;CGSNL Gene Name=THERMO-SENSITIVE CHLOROPLAST DEVELOPMENT 5;Oryzabase Gene Symbol Synonym(s)=OsTCD5%2C TSV%2C OsTSV%2C CSV1%2C OsCSV1;Oryzabase Gene Name Synonym(s)=thermo-sensitive chloroplast development 5%2C temperature-sensitive virescent%2C cold sensitive virescent1;Note=Similar to electron carrier/ oxidoreductase.;Transcript_evidence=AK065380;ORF_evidence=Q6AU91;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: FAD binding (GO:0071949);InterPro=FAD dependent protein (IPR028348),FAD/NAD(P)-binding domain (IPR023753),FAD-binding domain (IPR002938);NIAS_FLcDNA=J013020B13;Manual Curation=November 17%2C 2016;Literature_PMID=27531886;Oryzabase=21323;TENOR=Os05t0411200-01
Chr05	irgsp1_rep	five_prime_UTR	20111925	20112210	.	-	.	Parent=Os05t0411200-01
Chr05	irgsp1_rep	five_prime_UTR	20111743	20111857	.	-	.	Parent=Os05t0411200-01
Chr05	irgsp1_rep	five_prime_UTR	20111163	20111171	.	-	.	Parent=Os05t0411200-01
Chr05	irgsp1_rep	CDS	20111109	20111162	.	-	0	Parent=Os05t0411200-01
Chr05	irgsp1_rep	CDS	20109768	20110199	.	-	0	Parent=Os05t0411200-01
Chr05	irgsp1_rep	CDS	20108846	20108917	.	-	0	Parent=Os05t0411200-01
Chr05	irgsp1_rep	CDS	20108199	20108324	.	-	0	Parent=Os05t0411200-01
Chr05	irgsp1_rep	CDS	20107900	20108112	.	-	0	Parent=Os05t0411200-01
Chr05	irgsp1_rep	CDS	20107180	20107227	.	-	0	Parent=Os05t0411200-01
Chr05	irgsp1_rep	CDS	20106363	20106512	.	-	0	Parent=Os05t0411200-01
Chr05	irgsp1_rep	CDS	20106070	20106231	.	-	0	Parent=Os05t0411200-01
Chr05	irgsp1_rep	CDS	20104696	20104789	.	-	0	Parent=Os05t0411200-01
Chr05	irgsp1_rep	CDS	20104498	20104616	.	-	2	Parent=Os05t0411200-01
Chr05	irgsp1_rep	CDS	20104377	20104421	.	-	0	Parent=Os05t0411200-01
Chr05	irgsp1_rep	CDS	20103022	20103258	.	-	0	Parent=Os05t0411200-01
Chr05	irgsp1_rep	three_prime_UTR	20102713	20103021	.	-	.	Parent=Os05t0411200-01
Chr05	irgsp1_rep	mRNA	20102713	20112210	.	-	.	ID=Os05t0411200-02;Name=Os05t0411200-02;Locus_id=Os05g0411200;RAP-DB Gene Symbol Synonym(s)=TCD5%2C OsTCD5%2C CSV1%2C TSV;RAP-DB Gene Name Synonym(s)=thermo-sensitive chloroplast development 5%2C cold sensitive virescent1%2C TEMPERATURE-SENSITIVE VIRESCENT;CGSNL Gene Symbol=TCD5;CGSNL Gene Name=THERMO-SENSITIVE CHLOROPLAST DEVELOPMENT 5;Oryzabase Gene Symbol Synonym(s)=OsTCD5%2C TSV%2C OsTSV%2C CSV1%2C OsCSV1;Oryzabase Gene Name Synonym(s)=thermo-sensitive chloroplast development 5%2C temperature-sensitive virescent%2C cold sensitive virescent1;Note=Monooxygenase%2C Putative plastidic oxidoreductase%2C Chloroplast development at low temperature;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: FAD binding (GO:0071949);InterPro=FAD/NAD(P)-binding domain (IPR023753),FAD-binding domain (IPR002938);Manual Curation=October 9%2C 2018;Literature_PMID=28248438,27804786,27531886;Oryzabase=21323
Chr05	irgsp1_rep	five_prime_UTR	20112145	20112210	.	-	.	Parent=Os05t0411200-02
Chr05	irgsp1_rep	CDS	20111743	20112144	.	-	0	Parent=Os05t0411200-02
Chr05	irgsp1_rep	CDS	20111109	20111171	.	-	0	Parent=Os05t0411200-02
Chr05	irgsp1_rep	CDS	20109768	20110199	.	-	0	Parent=Os05t0411200-02
Chr05	irgsp1_rep	CDS	20108846	20108917	.	-	0	Parent=Os05t0411200-02
Chr05	irgsp1_rep	CDS	20108199	20108324	.	-	0	Parent=Os05t0411200-02
Chr05	irgsp1_rep	CDS	20107900	20108112	.	-	0	Parent=Os05t0411200-02
Chr05	irgsp1_rep	CDS	20107180	20107227	.	-	0	Parent=Os05t0411200-02
Chr05	irgsp1_rep	CDS	20106363	20106512	.	-	0	Parent=Os05t0411200-02
Chr05	irgsp1_rep	CDS	20106070	20106231	.	-	0	Parent=Os05t0411200-02
Chr05	irgsp1_rep	CDS	20104696	20104789	.	-	0	Parent=Os05t0411200-02
Chr05	irgsp1_rep	CDS	20104498	20104616	.	-	2	Parent=Os05t0411200-02
Chr05	irgsp1_rep	CDS	20104377	20104421	.	-	0	Parent=Os05t0411200-02
Chr05	irgsp1_rep	CDS	20103022	20103258	.	-	0	Parent=Os05t0411200-02
Chr05	irgsp1_rep	three_prime_UTR	20102713	20103021	.	-	.	Parent=Os05t0411200-02
Chr05	irgsp1_rep	mRNA	20112961	20117100	.	-	.	ID=Os05t0411300-01;Name=Os05t0411300-01;Locus_id=Os05g0411300;RAP-DB Gene Symbol Synonym(s)=BZIP39%2C OsbZIP39;RAP-DB Gene Name Synonym(s)=b-ZIP TRANSCRIPTION FACTOR 39%2C bZIP transcription factor 39%2C basic leucine zipper transcription factor 39;CGSNL Gene Symbol=BZIP39;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 39;Oryzabase Gene Symbol Synonym(s)=OsbZIP39%2C bZIP39%2C DLN138%2C OsDLN138;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 39%2C basic leucine zipper transcription factor 39%2C DLN repressor 138%2C DLN motif protein 138;Note=bZIP transcription factor%2C Regulation of endoplasmic reticulum stress response;Transcript_evidence=AK073142;ORF_evidence=Q6AU90;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700);InterPro=Basic-leucine zipper domain (IPR004827);NIAS_FLcDNA=J033024D10;Manual Curation=May 2%2C 2017;Literature_PMID=22084314;Oryzabase=10079;Expression=AK073142;TENOR=Os05t0411300-01;KEGG=Os05t0411300-01;Subcellular location=cytoplasm (GO:0005737), nucleus (GO:0005634)
Chr05	irgsp1_rep	five_prime_UTR	20116933	20117100	.	-	.	Parent=Os05t0411300-01
Chr05	irgsp1_rep	CDS	20115462	20116932	.	-	0	Parent=Os05t0411300-01
Chr05	irgsp1_rep	CDS	20113312	20113781	.	-	2	Parent=Os05t0411300-01
Chr05	irgsp1_rep	three_prime_UTR	20112961	20113311	.	-	.	Parent=Os05t0411300-01
Chr05	irgsp1_rep	mRNA	20112994	20116323	.	-	.	ID=Os05t0411300-02;Name=Os05t0411300-02;Locus_id=Os05g0411300;CGSNL Gene Symbol=BZIP39;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 39;Oryzabase Gene Symbol Synonym(s)=OsbZIP39%2C bZIP39%2C DLN138%2C OsDLN138;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 39%2C basic leucine zipper transcription factor 39%2C DLN repressor 138%2C DLN motif protein 138;Note=Similar to DNA binding protein.;Transcript_evidence=AK071931 (DDBJ%2C Best hit);ORF_evidence=NP_001148077.1 (RefSeq);NIAS_FLcDNA=J013081D14;Oryzabase=10079;Expression=AK071931;TENOR=Os05t0411300-02;KEGG=Os05t0411300-02
Chr05	irgsp1_rep	CDS	20115462	20116323	.	-	0	Parent=Os05t0411300-02
Chr05	irgsp1_rep	CDS	20113572	20113781	.	-	2	Parent=Os05t0411300-02
Chr05	irgsp1_rep	CDS	20113312	20113466	.	-	2	Parent=Os05t0411300-02
Chr05	irgsp1_rep	three_prime_UTR	20112994	20113311	.	-	.	Parent=Os05t0411300-02
Chr05	irgsp1_rep	mRNA	20127157	20130395	.	+	.	ID=Os05t0411600-01;Name=Os05t0411600-01;Locus_id=Os05g0411600;Note=Similar to nucleic acid binding protein.;Transcript_evidence=AK101609 (DDBJ%2C Best hit);ORF_evidence=NP_001148805.1 (RefSeq);InterPro=SUZ domain (IPR024771),R3H domain-containing protein%2C viridiplantae (IPR024773);NIAS_FLcDNA=J033052B11;TENOR=Os05t0411600-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	20127157	20127318	.	+	.	Parent=Os05t0411600-01
Chr05	irgsp1_rep	CDS	20127319	20127442	.	+	0	Parent=Os05t0411600-01
Chr05	irgsp1_rep	CDS	20128754	20129351	.	+	2	Parent=Os05t0411600-01
Chr05	irgsp1_rep	CDS	20129436	20129688	.	+	1	Parent=Os05t0411600-01
Chr05	irgsp1_rep	CDS	20130193	20130225	.	+	0	Parent=Os05t0411600-01
Chr05	irgsp1_rep	three_prime_UTR	20130226	20130395	.	+	.	Parent=Os05t0411600-01
Chr05	irgsp1_rep	mRNA	20154610	20156002	.	-	.	ID=Os05t0412000-00;Name=Os05t0412000-00;Locus_id=Os05g0412000;Note=Similar to Homeodomain-related.;Transcript_evidence=BT060585 (DDBJ);ORF_evidence=A2Q6F5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);TENOR=Os05t0412000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	20155068	20156002	.	-	0	Parent=Os05t0412000-00
Chr05	irgsp1_rep	CDS	20154664	20154970	.	-	1	Parent=Os05t0412000-00
Chr05	irgsp1_rep	three_prime_UTR	20154610	20154663	.	-	.	Parent=Os05t0412000-00
Chr05	irgsp1_rep	mRNA	20178223	20179019	.	-	.	ID=Os05t0412300-01;Name=Os05t0412300-01;Locus_id=Os05g0412300;Note=HMG-I and HMG-Y%2C DNA-binding domain containing protein.;Transcript_evidence=AK107782 (DDBJ%2C Best hit);ORF_evidence=B8AY95 (UniProt);NIAS_FLcDNA=002-133-C08;Expression=AK107782;TENOR=Os05t0412300-01;KEGG=Os05t0412300-01
Chr05	irgsp1_rep	five_prime_UTR	20178893	20179019	.	-	.	Parent=Os05t0412300-01
Chr05	irgsp1_rep	CDS	20178359	20178892	.	-	0	Parent=Os05t0412300-01
Chr05	irgsp1_rep	three_prime_UTR	20178223	20178358	.	-	.	Parent=Os05t0412300-01
Chr05	irgsp1_rep	mRNA	20178355	20179218	.	+	.	ID=Os05t0412400-01;Name=Os05t0412400-01;Locus_id=Os05g0412400;Note=Conserved hypothetical protein.;Transcript_evidence=AK063711 (DDBJ%2C Best hit);ORF_evidence=NP_001060479.1 (RefSeq);NIAS_FLcDNA=001-120-B11;Expression=AK063711;TENOR=Os05t0412400-01;KEGG=Os05t0412400-01
Chr05	irgsp1_rep	five_prime_UTR	20178355	20178844	.	+	.	Parent=Os05t0412400-01
Chr05	irgsp1_rep	CDS	20178845	20179054	.	+	0	Parent=Os05t0412400-01
Chr05	irgsp1_rep	three_prime_UTR	20179055	20179218	.	+	.	Parent=Os05t0412400-01
Chr05	irgsp1_rep	mRNA	20179394	20180152	.	-	.	ID=Os05t0412500-01;Name=Os05t0412500-01;Locus_id=Os05g0412500;Note=Non-protein coding transcript.;Transcript_evidence=AK106959 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-119-F01;TENOR=Os05t0412500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	exon	20179394	20180152	.	-	.	Parent=Os05t0412500-01
Chr05	irgsp1_rep	mRNA	20192522	20193783	.	-	.	ID=Os05t0412800-01;Name=Os05t0412800-01;Locus_id=Os05g0412800;CGSNL Gene Symbol=GSTU16;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 16;Oryzabase Gene Symbol Synonym(s)=OsGSTU16;Note=Similar to Glutathione S-transferase GST 41 (EC 2.5.1.18).;Transcript_evidence=AK287917 (DDBJ%2C Best hit);ORF_evidence=NP_001104998.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=J065214B19;Oryzabase=9534;TENOR=Os05t0412800-01;KEGG=Os05t0412800-01 (EC:2.5.1.18)
Chr05	irgsp1_rep	five_prime_UTR	20193659	20193783	.	-	.	Parent=Os05t0412800-01
Chr05	irgsp1_rep	CDS	20193320	20193658	.	-	0	Parent=Os05t0412800-01
Chr05	irgsp1_rep	CDS	20192764	20193249	.	-	0	Parent=Os05t0412800-01
Chr05	irgsp1_rep	three_prime_UTR	20192522	20192763	.	-	.	Parent=Os05t0412800-01
Chr05	irgsp1_rep	mRNA	20196728	20198228	.	-	.	ID=Os05t0412900-01;Name=Os05t0412900-01;Locus_id=Os05g0412900;Note=Hypothetical protein.;Transcript_evidence=AK061020 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=006-204-C09;Expression=AK061020;TENOR=Os05t0412900-01;KEGG=Os05t0412900-01
Chr05	irgsp1_rep	five_prime_UTR	20198079	20198228	.	-	.	Parent=Os05t0412900-01
Chr05	irgsp1_rep	CDS	20197086	20198078	.	-	0	Parent=Os05t0412900-01
Chr05	irgsp1_rep	three_prime_UTR	20196728	20197085	.	-	.	Parent=Os05t0412900-01
Chr05	irgsp1_rep	mRNA	20197014	20198584	.	+	.	ID=Os05t0413000-01;Name=Os05t0413000-01;Locus_id=Os05g0413000;Note=Mitochodrial transcription termination factor-related family protein.;Transcript_evidence=AK058277 (DDBJ%2C Best hit);ORF_evidence=B8AY96 (UniProt);InterPro=Mitochodrial transcription termination factor-related (IPR003690);NIAS_FLcDNA=001-013-C06;Expression=AK058277;TENOR=Os05t0413000-01;KEGG=Os05t0413000-01
Chr05	irgsp1_rep	five_prime_UTR	20197014	20197058	.	+	.	Parent=Os05t0413000-01
Chr05	irgsp1_rep	CDS	20197059	20198246	.	+	0	Parent=Os05t0413000-01
Chr05	irgsp1_rep	three_prime_UTR	20198247	20198584	.	+	.	Parent=Os05t0413000-01
Chr05	irgsp1_rep	mRNA	20204138	20207282	.	+	.	ID=Os05t0413200-01;Name=Os05t0413200-01;Locus_id=Os05g0413200;RAP-DB Gene Symbol Synonym(s)=TUB6%2C OsTUB6%2C TUBB6;RAP-DB Gene Name Synonym(s)=BETA-TUBULIN 6%2C beta tubulin 6%2C Tubulin beta-6 chain%2C Beta-6-tubulin;CGSNL Gene Symbol=TUB6;CGSNL Gene Name=BETA-TUBULIN 6;Oryzabase Gene Symbol Synonym(s)=OsTUB6%2C TUBB6;Oryzabase Gene Name Synonym(s)=beta tubulin 6%2C Tubulin beta-6 chain%2C Beta-6-tubulin;Note=Beta-tubulin %2C Responseto gebberellin (GA) and brassinolide (BL);Transcript_evidence=AB104732,AK122099;ORF_evidence=Q76FS3,Q0DI63;GO=Biological Process: microtubule-based process (GO:0007017),Biological Process: protein polymerization (GO:0051258),Molecular Function: GTPase activity (GO:0003924),Molecular Function: structural constituent of cytoskeleton (GO:0005200),Molecular Function: GTP binding (GO:0005525),Cellular Component: microtubule (GO:0005874),Cellular Component: protein complex (GO:0043234);InterPro=Tubulin (IPR000217),Beta tubulin (IPR002453),Tubulin/FtsZ%2C GTPase domain (IPR003008),Tubulin/FtsZ%2C C-terminal (IPR008280),Tubulin/FtsZ%2C 2-layer sandwich domain (IPR018316),Tubulin%2C C-terminal (IPR023123),Beta tubulin%2C autoregulation binding site (IPR013838),Tubulin%2C conserved site (IPR017975);NIAS_FLcDNA=J033125G10;Manual Curation=February 8%2C 2010;Literature_PMID=14634157;Oryzabase=2961;Expression=AK122099;TENOR=Os05t0413200-01;KEGG=Os05t0413200-01
Chr05	irgsp1_rep	five_prime_UTR	20204138	20204206	.	+	.	Parent=Os05t0413200-01
Chr05	irgsp1_rep	five_prime_UTR	20204652	20204671	.	+	.	Parent=Os05t0413200-01
Chr05	irgsp1_rep	CDS	20204672	20205065	.	+	0	Parent=Os05t0413200-01
Chr05	irgsp1_rep	CDS	20205167	20205436	.	+	2	Parent=Os05t0413200-01
Chr05	irgsp1_rep	CDS	20206425	20207095	.	+	2	Parent=Os05t0413200-01
Chr05	irgsp1_rep	three_prime_UTR	20207096	20207282	.	+	.	Parent=Os05t0413200-01
Chr05	irgsp1_rep	mRNA	20204666	20207095	.	-	.	ID=Os05t0413332-00;Name=Os05t0413332-00;Locus_id=Os05g0413332;Note=Hypothetical protein.;Transcript_evidence=tplb0045b10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0413332-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	20206583	20207095	.	-	0	Parent=Os05t0413332-00
Chr05	irgsp1_rep	three_prime_UTR	20206423	20206582	.	-	.	Parent=Os05t0413332-00
Chr05	irgsp1_rep	three_prime_UTR	20205165	20205434	.	-	.	Parent=Os05t0413332-00
Chr05	irgsp1_rep	three_prime_UTR	20204666	20205063	.	-	.	Parent=Os05t0413332-00
Chr05	irgsp1_rep	mRNA	20210324	20213503	.	+	.	ID=Os05t0413400-01;Name=Os05t0413400-01;Locus_id=Os05g0413400;RAP-DB Gene Symbol Synonym(s)=IPPI2%2C OsIPPI2;RAP-DB Gene Name Synonym(s)=isopentenyl diphosphate isomerase 2;CGSNL Gene Symbol=IPPI2;CGSNL Gene Name=ISOPENTENYL DIPHOSPHATE ISOMERASE 2;Oryzabase Gene Symbol Synonym(s)=OsIPPI2;Oryzabase Gene Name Synonym(s)=IPP isomerase 2%2C isopentenyl diphosphate isomerase 2;Note=Isopentenyl diphosphate isomerase%2C Isoprenoid biosynthesis;Transcript_evidence=AK060336;ORF_evidence=Q6AUB0;GO=Biological Process: isoprenoid biosynthetic process (GO:0008299),Molecular Function: isopentenyl-diphosphate delta-isomerase activity (GO:0004452),Molecular Function: hydrolase activity (GO:0016787);InterPro=NUDIX hydrolase-like domain superfamily (IPR015797),Isopentenyl-diphosphate delta-isomerase%2C type 1 (IPR011876),NUDIX hydrolase domain (IPR000086);NIAS_FLcDNA=001-008-C05;Manual Curation=November 6%2C 2019;Literature_PMID=3167906;Oryzabase=23332;Expression=AK060336;TENOR=Os05t0413400-01;KEGG=Os05t0413400-01 (EC:5.3.3.2);Subcellular location=mitochondrion (GO:0005739), peroxisome (GO:0005777), endoplasmic reticulum (GO:0005783), chloroplast (GO:0009507)
Chr05	irgsp1_rep	five_prime_UTR	20210324	20210414	.	+	.	Parent=Os05t0413400-01
Chr05	irgsp1_rep	CDS	20210415	20210656	.	+	0	Parent=Os05t0413400-01
Chr05	irgsp1_rep	CDS	20211049	20211104	.	+	1	Parent=Os05t0413400-01
Chr05	irgsp1_rep	CDS	20211736	20211827	.	+	2	Parent=Os05t0413400-01
Chr05	irgsp1_rep	CDS	20212646	20212748	.	+	0	Parent=Os05t0413400-01
Chr05	irgsp1_rep	CDS	20212869	20213006	.	+	2	Parent=Os05t0413400-01
Chr05	irgsp1_rep	CDS	20213144	20213394	.	+	2	Parent=Os05t0413400-01
Chr05	irgsp1_rep	three_prime_UTR	20213395	20213503	.	+	.	Parent=Os05t0413400-01
Chr05	irgsp1_rep	mRNA	20210370	20213455	.	+	.	ID=Os05t0413400-02;Name=Os05t0413400-02;Locus_id=Os05g0413400;CGSNL Gene Symbol=IPPI2;CGSNL Gene Name=ISOPENTENYL DIPHOSPHATE ISOMERASE 2;Oryzabase Gene Symbol Synonym(s)=OsIPPI2;Oryzabase Gene Name Synonym(s)=IPP isomerase 2%2C isopentenyl diphosphate isomerase 2;Note=Similar to Isopentenyl diphosphate isomerase 1.;Transcript_evidence=AK099027 (DDBJ%2C Best hit);ORF_evidence=Q71RX2 (UniProt);GO=Biological Process: isoprenoid biosynthetic process (GO:0008299),Molecular Function: isopentenyl-diphosphate delta-isomerase activity (GO:0004452),Molecular Function: hydrolase activity (GO:0016787);InterPro=NUDIX hydrolase domain (IPR000086),Isopentenyl-diphosphate delta-isomerase%2C type 1 (IPR011876),NUDIX hydrolase domain-like (IPR015797);NIAS_FLcDNA=J013124F09;Oryzabase=23332;Expression=AK099027;TENOR=Os05t0413400-02;KEGG=Os05t0413400-02 (EC:5.3.3.2)
Chr05	irgsp1_rep	five_prime_UTR	20210370	20210414	.	+	.	Parent=Os05t0413400-02
Chr05	irgsp1_rep	CDS	20210415	20210656	.	+	0	Parent=Os05t0413400-02
Chr05	irgsp1_rep	CDS	20211049	20211104	.	+	1	Parent=Os05t0413400-02
Chr05	irgsp1_rep	CDS	20211736	20211827	.	+	2	Parent=Os05t0413400-02
Chr05	irgsp1_rep	CDS	20212646	20212748	.	+	0	Parent=Os05t0413400-02
Chr05	irgsp1_rep	CDS	20212869	20213006	.	+	2	Parent=Os05t0413400-02
Chr05	irgsp1_rep	CDS	20213144	20213394	.	+	2	Parent=Os05t0413400-02
Chr05	irgsp1_rep	three_prime_UTR	20213395	20213455	.	+	.	Parent=Os05t0413400-02
Chr05	irgsp1_rep	mRNA	20211736	20213397	.	-	.	ID=Os05t0413575-00;Name=Os05t0413575-00;Locus_id=Os05g0413575;Note=Hypothetical gene.;Transcript_evidence=BT016337 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0413575-00
Chr05	irgsp1_rep	five_prime_UTR	20213386	20213397	.	-	.	Parent=Os05t0413575-00
Chr05	irgsp1_rep	CDS	20213155	20213385	.	-	0	Parent=Os05t0413575-00
Chr05	irgsp1_rep	three_prime_UTR	20213144	20213154	.	-	.	Parent=Os05t0413575-00
Chr05	irgsp1_rep	three_prime_UTR	20212847	20213006	.	-	.	Parent=Os05t0413575-00
Chr05	irgsp1_rep	three_prime_UTR	20212643	20212726	.	-	.	Parent=Os05t0413575-00
Chr05	irgsp1_rep	three_prime_UTR	20211736	20211824	.	-	.	Parent=Os05t0413575-00
Chr05	irgsp1_rep	mRNA	20243972	20244898	.	-	.	ID=Os05t0414100-00;Name=Os05t0414100-00;Locus_id=Os05g0414100;Note=Hypothetical conserved gene.;Transcript_evidence=CT836368 (DDBJ%2C Best hit);ORF_evidence=NP_001145439.1 (RefSeq);TENOR=Os05t0414100-00;KEGG=Os05t0414100-00
Chr05	irgsp1_rep	five_prime_UTR	20244897	20244898	.	-	.	Parent=Os05t0414100-00
Chr05	irgsp1_rep	CDS	20244834	20244896	.	-	0	Parent=Os05t0414100-00
Chr05	irgsp1_rep	CDS	20244608	20244749	.	-	0	Parent=Os05t0414100-00
Chr05	irgsp1_rep	CDS	20244379	20244503	.	-	2	Parent=Os05t0414100-00
Chr05	irgsp1_rep	three_prime_UTR	20243972	20244378	.	-	.	Parent=Os05t0414100-00
Chr05	irgsp1_rep	mRNA	20258788	20262445	.	+	.	ID=Os05t0414200-01;Name=Os05t0414200-01;Locus_id=Os05g0414200;Note=NB-ARC domain containing protein.;Transcript_evidence=AK106297 (DDBJ%2C Best hit);ORF_evidence=B8AY99 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=002-101-C01;Expression=AK106297;TENOR=Os05t0414200-01;KEGG=Os05t0414200-01
Chr05	irgsp1_rep	five_prime_UTR	20258788	20259107	.	+	.	Parent=Os05t0414200-01
Chr05	irgsp1_rep	CDS	20259108	20260307	.	+	0	Parent=Os05t0414200-01
Chr05	irgsp1_rep	CDS	20262325	20262411	.	+	0	Parent=Os05t0414200-01
Chr05	irgsp1_rep	three_prime_UTR	20262412	20262445	.	+	.	Parent=Os05t0414200-01
Chr05	irgsp1_rep	mRNA	20264340	20266481	.	-	.	ID=Os05t0414300-01;Name=Os05t0414300-01;Locus_id=Os05g0414300;Note=NB-ARC domain containing protein.;Transcript_evidence=AK120791 (DDBJ%2C Best hit);ORF_evidence=A2Y4N9 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J023011L08;Expression=AK120791;TENOR=Os05t0414300-01;KEGG=Os05t0414300-01
Chr05	irgsp1_rep	five_prime_UTR	20266362	20266481	.	-	.	Parent=Os05t0414300-01
Chr05	irgsp1_rep	CDS	20264418	20266361	.	-	0	Parent=Os05t0414300-01
Chr05	irgsp1_rep	three_prime_UTR	20264340	20264417	.	-	.	Parent=Os05t0414300-01
Chr05	irgsp1_rep	mRNA	20263778	20266412	.	-	.	ID=Os05t0414300-02;Name=Os05t0414300-02;Locus_id=Os05g0414300;Note=NB-ARC domain containing protein.;Transcript_evidence=AK120513 (DDBJ%2C Best hit);ORF_evidence=A2Y4N9 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013123O11;Expression=AK120513;TENOR=Os05t0414300-02;KEGG=Os05t0414300-02
Chr05	irgsp1_rep	five_prime_UTR	20266362	20266412	.	-	.	Parent=Os05t0414300-02
Chr05	irgsp1_rep	CDS	20264418	20266361	.	-	0	Parent=Os05t0414300-02
Chr05	irgsp1_rep	three_prime_UTR	20263778	20264417	.	-	.	Parent=Os05t0414300-02
Chr05	irgsp1_rep	mRNA	20267977	20271147	.	-	.	ID=Os05t0414400-01;Name=Os05t0414400-01;Locus_id=Os05g0414400;Note=Domain of unknown function DUF659 domain containing protein.;Transcript_evidence=AK119358 (DDBJ%2C Best hit);ORF_evidence=B9FPL6 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Domain of unknown function DUF659 (IPR007021),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=001-131-G03;TENOR=Os05t0414400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	20271064	20271147	.	-	.	Parent=Os05t0414400-01
Chr05	irgsp1_rep	CDS	20271008	20271063	.	-	0	Parent=Os05t0414400-01
Chr05	irgsp1_rep	CDS	20270534	20270575	.	-	1	Parent=Os05t0414400-01
Chr05	irgsp1_rep	CDS	20270205	20270440	.	-	1	Parent=Os05t0414400-01
Chr05	irgsp1_rep	CDS	20269990	20270130	.	-	2	Parent=Os05t0414400-01
Chr05	irgsp1_rep	CDS	20269204	20269916	.	-	2	Parent=Os05t0414400-01
Chr05	irgsp1_rep	three_prime_UTR	20268617	20269203	.	-	.	Parent=Os05t0414400-01
Chr05	irgsp1_rep	three_prime_UTR	20268263	20268535	.	-	.	Parent=Os05t0414400-01
Chr05	irgsp1_rep	three_prime_UTR	20267977	20268163	.	-	.	Parent=Os05t0414400-01
Chr05	irgsp1_rep	mRNA	20267701	20271119	.	-	.	ID=Os05t0414400-02;Name=Os05t0414400-02;Locus_id=Os05g0414400;Note=Domain of unknown function DUF659 domain containing protein.;Transcript_evidence=AK102320 (DDBJ%2C Best hit);ORF_evidence=B9FPL6 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Domain of unknown function DUF659 (IPR007021),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J033090I04;TENOR=Os05t0414400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	20271064	20271119	.	-	.	Parent=Os05t0414400-02
Chr05	irgsp1_rep	CDS	20271008	20271063	.	-	0	Parent=Os05t0414400-02
Chr05	irgsp1_rep	CDS	20270534	20270575	.	-	1	Parent=Os05t0414400-02
Chr05	irgsp1_rep	CDS	20270205	20270440	.	-	1	Parent=Os05t0414400-02
Chr05	irgsp1_rep	CDS	20269990	20270130	.	-	2	Parent=Os05t0414400-02
Chr05	irgsp1_rep	CDS	20269204	20269916	.	-	2	Parent=Os05t0414400-02
Chr05	irgsp1_rep	three_prime_UTR	20267701	20269203	.	-	.	Parent=Os05t0414400-02
Chr05	irgsp1_rep	mRNA	20277236	20278478	.	-	.	ID=Os05t0414501-01;Name=Os05t0414501-01;Locus_id=Os05g0414501;Note=Hypothetical conserved gene.;Transcript_evidence=AK062286 (DDBJ%2C Best hit);ORF_evidence=Q6AUA3 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein dimerization activity (GO:0046983);InterPro=HAT dimerisation (IPR008906),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=001-100-E01;Expression=AK062286;TENOR=Os05t0414501-01;KEGG=Os05t0414501-01
Chr05	irgsp1_rep	five_prime_UTR	20278471	20278478	.	-	.	Parent=Os05t0414501-01
Chr05	irgsp1_rep	CDS	20278157	20278470	.	-	0	Parent=Os05t0414501-01
Chr05	irgsp1_rep	CDS	20277527	20278070	.	-	1	Parent=Os05t0414501-01
Chr05	irgsp1_rep	three_prime_UTR	20277236	20277526	.	-	.	Parent=Os05t0414501-01
Chr05	irgsp1_rep	mRNA	20278636	20281928	.	-	.	ID=Os05t0414600-01;Name=Os05t0414600-01;Locus_id=Os05g0414600;Note=Conserved hypothetical protein.;Transcript_evidence=AK070176 (DDBJ%2C Best hit);ORF_evidence=B8AYA2 (UniProt);NIAS_FLcDNA=J023046E07;TENOR=Os05t0414600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	20281928	20281928	.	-	.	Parent=Os05t0414600-01
Chr05	irgsp1_rep	CDS	20281067	20281927	.	-	0	Parent=Os05t0414600-01
Chr05	irgsp1_rep	three_prime_UTR	20280516	20281066	.	-	.	Parent=Os05t0414600-01
Chr05	irgsp1_rep	three_prime_UTR	20278636	20279856	.	-	.	Parent=Os05t0414600-01
Chr05	irgsp1_rep	mRNA	20283411	20286888	.	-	.	ID=Os05t0414700-01;Name=Os05t0414700-01;Locus_id=Os05g0414700;Note=Similar to BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1.;Transcript_evidence=AK111590 (DDBJ%2C Best hit);ORF_evidence=NP_001147794.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J013089M02;TENOR=Os05t0414700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	20286730	20286888	.	-	.	Parent=Os05t0414700-01
Chr05	irgsp1_rep	five_prime_UTR	20285742	20285812	.	-	.	Parent=Os05t0414700-01
Chr05	irgsp1_rep	CDS	20284920	20285741	.	-	0	Parent=Os05t0414700-01
Chr05	irgsp1_rep	CDS	20283790	20284791	.	-	0	Parent=Os05t0414700-01
Chr05	irgsp1_rep	three_prime_UTR	20283411	20283789	.	-	.	Parent=Os05t0414700-01
Chr05	irgsp1_rep	mRNA	20283568	20285819	.	+	.	ID=Os05t0414750-00;Name=Os05t0414750-00;Locus_id=Os05g0414750;Note=Hypothetical protein.;Transcript_evidence=tplb0030m05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0414750-00
Chr05	irgsp1_rep	five_prime_UTR	20283568	20284705	.	+	.	Parent=Os05t0414750-00
Chr05	irgsp1_rep	CDS	20284706	20284788	.	+	0	Parent=Os05t0414750-00
Chr05	irgsp1_rep	CDS	20284917	20285136	.	+	1	Parent=Os05t0414750-00
Chr05	irgsp1_rep	three_prime_UTR	20285137	20285819	.	+	.	Parent=Os05t0414750-00
Chr05	irgsp1_rep	mRNA	20289287	20289764	.	+	.	ID=Os05t0414800-01;Name=Os05t0414800-01;Locus_id=Os05g0414800;Note=Hypothetical gene.;Transcript_evidence=AK103752 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033143B04;Expression=AK103752;TENOR=Os05t0414800-01;KEGG=Os05t0414800-01
Chr05	irgsp1_rep	five_prime_UTR	20289287	20289287	.	+	.	Parent=Os05t0414800-01
Chr05	irgsp1_rep	CDS	20289288	20289527	.	+	0	Parent=Os05t0414800-01
Chr05	irgsp1_rep	three_prime_UTR	20289528	20289764	.	+	.	Parent=Os05t0414800-01
Chr05	irgsp1_rep	mRNA	20302095	20304710	.	+	.	ID=Os05t0415200-01;Name=Os05t0415200-01;Locus_id=Os05g0415200;RAP-DB Gene Symbol Synonym(s)=OsPCS1%2C PCS1;RAP-DB Gene Name Synonym(s)=PHYTOCHELATIN SYNTHASE 1%2C Phytochelatin Synthase 1;CGSNL Gene Symbol=PCS1;CGSNL Gene Name=PHYTOCHELATIN SYNTHASE 1;Oryzabase Gene Symbol Synonym(s)=OsPCS1%2C OsPCS2%2C PCS2%2C OsPCS15%2C PCS15;Oryzabase Gene Name Synonym(s)=Phytochelatin Synthase 1;Note=Phytochelatin synthase%2C Heavy metal (cadmium) resistance;Transcript_evidence=AF439787;ORF_evidence=Q8GZR3,Q0DI55;GO=Biological Process: response to metal ion (GO:0010038),Biological Process: phytochelatin biosynthetic process (GO:0046938),Molecular Function: glutathione gamma-glutamylcysteinyltransferase activity (GO:0016756),Molecular Function: metal ion binding (GO:0046872);InterPro=Phytochelatin synthase (IPR007719);Manual Curation=March 22%2C 2017;Literature_PMID=28283922,DOI:10.1111/j.1672-9072.2007.00473.x;Oryzabase=20187;Expression=AF439787;TENOR=Os05t0415200-00;KEGG=Os05t0415200-00
Chr05	irgsp1_rep	CDS	20302095	20302610	.	+	0	Parent=Os05t0415200-01
Chr05	irgsp1_rep	CDS	20302711	20302874	.	+	0	Parent=Os05t0415200-01
Chr05	irgsp1_rep	CDS	20303717	20303777	.	+	1	Parent=Os05t0415200-01
Chr05	irgsp1_rep	three_prime_UTR	20303778	20303804	.	+	.	Parent=Os05t0415200-01
Chr05	irgsp1_rep	three_prime_UTR	20303976	20304091	.	+	.	Parent=Os05t0415200-01
Chr05	irgsp1_rep	three_prime_UTR	20304174	20304710	.	+	.	Parent=Os05t0415200-01
Chr05	irgsp1_rep	mRNA	20308486	20310242	.	-	.	ID=Os05t0415400-01;Name=Os05t0415400-01;Locus_id=Os05g0415400;CGSNL Gene Symbol=NAC24;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 24;Oryzabase Gene Symbol Synonym(s)=NAC94%2C ONAC024%2C ONAC24;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 94%2C NAC domain-containing protein 024%2C NAC domain-containing protein 24;Note=Similar to OsNAC6 protein.;Transcript_evidence=AK107330 (DDBJ%2C Best hit),AK119651 (DDBJ%2C Best hit);ORF_evidence=C6F1L5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=002-126-F03,002-130-G11;Oryzabase=11178;Expression=AK107330;TENOR=Os05t0415400-01;KEGG=Os05t0415400-01
Chr05	irgsp1_rep	five_prime_UTR	20310182	20310242	.	-	.	Parent=Os05t0415400-01
Chr05	irgsp1_rep	CDS	20310013	20310181	.	-	0	Parent=Os05t0415400-01
Chr05	irgsp1_rep	CDS	20309592	20309905	.	-	2	Parent=Os05t0415400-01
Chr05	irgsp1_rep	CDS	20308828	20309277	.	-	0	Parent=Os05t0415400-01
Chr05	irgsp1_rep	three_prime_UTR	20308486	20308827	.	-	.	Parent=Os05t0415400-01
Chr05	irgsp1_rep	mRNA	20314680	20321520	.	-	.	ID=Os05t0415600-01;Name=Os05t0415600-01;Locus_id=Os05g0415600;Note=Similar to Beta-hexosaminidase beta chain precursor (EC 3.2.1.52) (N-acetyl-beta- glucosaminidase) (Beta-N-acetylhexosaminidase) (Hexosaminidase B).;Transcript_evidence=AK120971 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023041G06;Expression=AK120971;TENOR=Os05t0415600-01;KEGG=Os05t0415600-01 (EC:3.2.1.52)
Chr05	irgsp1_rep	five_prime_UTR	20321233	20321520	.	-	.	Parent=Os05t0415600-01
Chr05	irgsp1_rep	five_prime_UTR	20320305	20320475	.	-	.	Parent=Os05t0415600-01
Chr05	irgsp1_rep	five_prime_UTR	20316939	20320190	.	-	.	Parent=Os05t0415600-01
Chr05	irgsp1_rep	CDS	20316887	20316938	.	-	0	Parent=Os05t0415600-01
Chr05	irgsp1_rep	CDS	20315695	20316173	.	-	2	Parent=Os05t0415600-01
Chr05	irgsp1_rep	CDS	20315504	20315587	.	-	0	Parent=Os05t0415600-01
Chr05	irgsp1_rep	three_prime_UTR	20314680	20315503	.	-	.	Parent=Os05t0415600-01
Chr05	irgsp1_rep	mRNA	20317098	20321519	.	-	.	ID=Os05t0415600-02;Name=Os05t0415600-02;Locus_id=Os05g0415600;Note=Non-protein coding transcript.;Transcript_evidence=AK065818 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013042K21;TENOR=Os05t0415600-02
Chr05	irgsp1_rep	exon	20321233	20321519	.	-	.	Parent=Os05t0415600-02
Chr05	irgsp1_rep	exon	20320305	20320475	.	-	.	Parent=Os05t0415600-02
Chr05	irgsp1_rep	exon	20317098	20320190	.	-	.	Parent=Os05t0415600-02
Chr05	irgsp1_rep	mRNA	20315236	20320672	.	+	.	ID=Os05t0415700-01;Name=Os05t0415700-01;Locus_id=Os05g0415700;Note=Glycoside hydrolase%2C family 20 protein.;Transcript_evidence=AK102449 (DDBJ%2C Best hit);ORF_evidence=XP_002886950.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: beta-N-acetylhexosaminidase activity (GO:0004563),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 20 (IPR001540),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Acetylhexosaminidase%2C subunit a/b (IPR015882),Glycoside hydrolase%2C family 20%2C catalytic core (IPR015883),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J033093O08;Expression=AK102449;TENOR=Os05t0415700-01;KEGG=Os05t0415700-01 (EC:3.2.1.52)
Chr05	irgsp1_rep	five_prime_UTR	20315236	20315601	.	+	.	Parent=Os05t0415700-01
Chr05	irgsp1_rep	five_prime_UTR	20315713	20315719	.	+	.	Parent=Os05t0415700-01
Chr05	irgsp1_rep	CDS	20315720	20316046	.	+	0	Parent=Os05t0415700-01
Chr05	irgsp1_rep	CDS	20316128	20316202	.	+	0	Parent=Os05t0415700-01
Chr05	irgsp1_rep	CDS	20316406	20316441	.	+	0	Parent=Os05t0415700-01
Chr05	irgsp1_rep	CDS	20316548	20316659	.	+	0	Parent=Os05t0415700-01
Chr05	irgsp1_rep	CDS	20317328	20317398	.	+	2	Parent=Os05t0415700-01
Chr05	irgsp1_rep	CDS	20317533	20317663	.	+	0	Parent=Os05t0415700-01
Chr05	irgsp1_rep	CDS	20317964	20318029	.	+	1	Parent=Os05t0415700-01
Chr05	irgsp1_rep	CDS	20318249	20318349	.	+	1	Parent=Os05t0415700-01
Chr05	irgsp1_rep	CDS	20318557	20318616	.	+	2	Parent=Os05t0415700-01
Chr05	irgsp1_rep	CDS	20318709	20318742	.	+	2	Parent=Os05t0415700-01
Chr05	irgsp1_rep	CDS	20319098	20319196	.	+	1	Parent=Os05t0415700-01
Chr05	irgsp1_rep	CDS	20319265	20319324	.	+	1	Parent=Os05t0415700-01
Chr05	irgsp1_rep	CDS	20319946	20320196	.	+	1	Parent=Os05t0415700-01
Chr05	irgsp1_rep	CDS	20320319	20320491	.	+	2	Parent=Os05t0415700-01
Chr05	irgsp1_rep	three_prime_UTR	20320492	20320672	.	+	.	Parent=Os05t0415700-01
Chr05	irgsp1_rep	mRNA	20325340	20328408	.	+	.	ID=Os05t0415800-01;Name=Os05t0415800-01;Locus_id=Os05g0415800;CGSNL Gene Symbol=CYP51H6;CGSNL Gene Name=P-450 51H6;Oryzabase Gene Symbol Synonym(s)=OsCYP51H6;Oryzabase Gene Name Synonym(s)=CytoChrome P450 51H6;Note=Similar to CytoChrome P450 CYP51H10.;Transcript_evidence=AK240713 (DDBJ%2C Best hit);ORF_evidence=A1BQV1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: monooxygenase activity (GO:0004497),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group IV (IPR002403);NIAS_FLcDNA=J043022G11;Oryzabase=17995;TENOR=Os05t0415800-01;KEGG=Os05t0415800-01 (EC:1.14.13.70)
Chr05	irgsp1_rep	five_prime_UTR	20325340	20325388	.	+	.	Parent=Os05t0415800-01
Chr05	irgsp1_rep	five_prime_UTR	20325794	20325805	.	+	.	Parent=Os05t0415800-01
Chr05	irgsp1_rep	CDS	20325806	20326309	.	+	0	Parent=Os05t0415800-01
Chr05	irgsp1_rep	CDS	20326759	20327099	.	+	0	Parent=Os05t0415800-01
Chr05	irgsp1_rep	CDS	20327405	20328104	.	+	1	Parent=Os05t0415800-01
Chr05	irgsp1_rep	three_prime_UTR	20328105	20328408	.	+	.	Parent=Os05t0415800-01
Chr05	irgsp1_rep	mRNA	20335431	20341315	.	+	.	ID=Os05t0415900-00;Name=Os05t0415900-00;Locus_id=Os05g0415900;CGSNL Gene Symbol=CYP51H7;CGSNL Gene Name=P-450 51H7;Oryzabase Gene Symbol Synonym(s)=OsCYP51H7;Oryzabase Gene Name Synonym(s)=CytoChrome P450 51H7;Note=Similar to CytoChrome P450 CYP51H11.;Transcript_evidence=tplb0031a24 (Wheat FLcDNA);ORF_evidence=A1BQV5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);Oryzabase=17996;TENOR=Os05t0415900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	20335431	20335504	.	+	.	Parent=Os05t0415900-00
Chr05	irgsp1_rep	CDS	20335505	20335963	.	+	0	Parent=Os05t0415900-00
Chr05	irgsp1_rep	CDS	20340229	20340597	.	+	0	Parent=Os05t0415900-00
Chr05	irgsp1_rep	three_prime_UTR	20340598	20341315	.	+	.	Parent=Os05t0415900-00
Chr05	irgsp1_rep	mRNA	20379338	20381121	.	+	.	ID=Os05t0416400-00;Name=Os05t0416400-00;Locus_id=Os05g0416400;CGSNL Gene Symbol=CYP51H8;CGSNL Gene Name=P-450 51H8;Oryzabase Gene Symbol Synonym(s)=OsCYP51H8;Oryzabase Gene Name Synonym(s)=CytoChrome P450 51H8;Note=Similar to CytoChrome P450 CYP51H10.;Transcript_evidence=tplb0031a24 (Wheat FLcDNA);ORF_evidence=A1BQV1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: monooxygenase activity (GO:0004497),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group IV (IPR002403),CytoChrome P450%2C conserved site (IPR017972);Oryzabase=17997;TENOR=Os05t0416400-00
Chr05	irgsp1_rep	five_prime_UTR	20379338	20379400	.	+	.	Parent=Os05t0416400-00
Chr05	irgsp1_rep	CDS	20379401	20379874	.	+	0	Parent=Os05t0416400-00
Chr05	irgsp1_rep	CDS	20380120	20381121	.	+	0	Parent=Os05t0416400-00
Chr05	irgsp1_rep	mRNA	20417514	20417981	.	+	.	ID=Os05t0416900-00;Name=Os05t0416900-00;Locus_id=Os05g0416900;Note=Hypothetical protein.;Transcript_evidence=EU967638 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0416900-00
Chr05	irgsp1_rep	five_prime_UTR	20417514	20417532	.	+	.	Parent=Os05t0416900-00
Chr05	irgsp1_rep	CDS	20417533	20417981	.	+	0	Parent=Os05t0416900-00
Chr05	irgsp1_rep	mRNA	20417514	20418507	.	-	.	ID=Os05t0417000-00;Name=Os05t0417000-00;Locus_id=Os05g0417000;Note=Similar to LOB domain protein 6 (ASYMMETRIC LEAVES2).;Transcript_evidence=AY940681 (DDBJ);ORF_evidence=NP_001105838.1 (RefSeq);InterPro=Lateral organ boundaries%2C LOB (IPR004883);TENOR=Os05t0417000-00;KEGG=Os05t0417000-00
Chr05	irgsp1_rep	CDS	20418079	20418507	.	-	0	Parent=Os05t0417000-00
Chr05	irgsp1_rep	CDS	20417566	20417976	.	-	0	Parent=Os05t0417000-00
Chr05	irgsp1_rep	three_prime_UTR	20417514	20417565	.	-	.	Parent=Os05t0417000-00
Chr05	irgsp1_rep	mRNA	20433366	20437932	.	+	.	ID=Os05t0417100-01;Name=Os05t0417100-01;Locus_id=Os05g0417100;RAP-DB Gene Symbol Synonym(s)=OsDeg10%2C OsDegP7%2C TCM5;RAP-DB Gene Name Synonym(s)=Deg protease 7%2C THERMO-SENSITIVE CHLOROPHYLL-DEFICIENT MUTANT 5%2C thermo-sensitive chlorophyll-deficient mutant 5;CGSNL Gene Symbol=TCM5;CGSNL Gene Name=THERMO-SENSITIVE CHLOROPHYLL-DEFICIENT MUTANT 5;Oryzabase Gene Symbol Synonym(s)=OsDegp7%2C DEGP7%2C OsDeg10;Oryzabase Gene Name Synonym(s)=Deg protease 7%2C DEG PROTEASE 7%2C thermo-sensitive chlorophyll-deficient mutant 5;Note=Chloroplast-targeted Deg protease protein%2C Chloroplast development and maintenance of PSII function under high temperatures;Transcript_evidence=AK073199;ORF_evidence=Q6AT72;GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: protein binding (GO:0005515);InterPro=Peptidase S1C (IPR001940),Peptidase S1%2C PA clan (IPR009003),PDZ domain (IPR001478);NIAS_FLcDNA=J033023K08;Manual Curation=June 16%2C 2017;Literature_PMID=27000876,22520048;Oryzabase=20083;Expression=AK073199;TENOR=Os05t0417100-01;KEGG=Os05t0417100-01;Subcellular location=chloroplast (GO:0009507)
Chr05	irgsp1_rep	five_prime_UTR	20433366	20433428	.	+	.	Parent=Os05t0417100-01
Chr05	irgsp1_rep	CDS	20433429	20433921	.	+	0	Parent=Os05t0417100-01
Chr05	irgsp1_rep	CDS	20434383	20434628	.	+	2	Parent=Os05t0417100-01
Chr05	irgsp1_rep	CDS	20435487	20435682	.	+	2	Parent=Os05t0417100-01
Chr05	irgsp1_rep	CDS	20435763	20436022	.	+	1	Parent=Os05t0417100-01
Chr05	irgsp1_rep	CDS	20436180	20436307	.	+	2	Parent=Os05t0417100-01
Chr05	irgsp1_rep	CDS	20436693	20436896	.	+	0	Parent=Os05t0417100-01
Chr05	irgsp1_rep	CDS	20437026	20437076	.	+	0	Parent=Os05t0417100-01
Chr05	irgsp1_rep	CDS	20437207	20437473	.	+	0	Parent=Os05t0417100-01
Chr05	irgsp1_rep	three_prime_UTR	20437474	20437932	.	+	.	Parent=Os05t0417100-01
Chr05	irgsp1_rep	mRNA	20438344	20440193	.	+	.	ID=Os05t0417200-01;Name=Os05t0417200-01;Locus_id=Os05g0417200;Note=Thioredoxin-like fold domain containing protein.;Transcript_evidence=AK071955 (DDBJ%2C Best hit);ORF_evidence=A2Y4Q4 (UniProt);NIAS_FLcDNA=J013081M10;Expression=AK071955;TENOR=Os05t0417200-01;KEGG=Os05t0417200-01
Chr05	irgsp1_rep	five_prime_UTR	20438344	20438579	.	+	.	Parent=Os05t0417200-01
Chr05	irgsp1_rep	CDS	20438580	20439253	.	+	0	Parent=Os05t0417200-01
Chr05	irgsp1_rep	CDS	20439456	20439537	.	+	1	Parent=Os05t0417200-01
Chr05	irgsp1_rep	CDS	20439637	20439748	.	+	0	Parent=Os05t0417200-01
Chr05	irgsp1_rep	CDS	20439848	20439969	.	+	2	Parent=Os05t0417200-01
Chr05	irgsp1_rep	three_prime_UTR	20439970	20440193	.	+	.	Parent=Os05t0417200-01
Chr05	irgsp1_rep	mRNA	20440882	20441717	.	+	.	ID=Os05t0417251-00;Name=Os05t0417251-00;Locus_id=Os05g0417251;Note=Hypothetical gene.;Transcript_evidence=CT836370 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os05t0417251-00;KEGG=Os05t0417251-00
Chr05	irgsp1_rep	five_prime_UTR	20440882	20440938	.	+	.	Parent=Os05t0417251-00
Chr05	irgsp1_rep	CDS	20440939	20441328	.	+	0	Parent=Os05t0417251-00
Chr05	irgsp1_rep	three_prime_UTR	20441329	20441717	.	+	.	Parent=Os05t0417251-00
Chr05	irgsp1_rep	mRNA	20442734	20446076	.	+	.	ID=Os05t0417300-01;Name=Os05t0417300-01;Locus_id=Os05g0417300;Note=Conserved hypothetical protein.;Transcript_evidence=AK105592 (DDBJ%2C Best hit);ORF_evidence=B8AYA9 (UniProt);NIAS_FLcDNA=001-129-A08;Expression=AK105592;TENOR=Os05t0417300-01;KEGG=Os05t0417300-01
Chr05	irgsp1_rep	five_prime_UTR	20442734	20442904	.	+	.	Parent=Os05t0417300-01
Chr05	irgsp1_rep	CDS	20442905	20442970	.	+	0	Parent=Os05t0417300-01
Chr05	irgsp1_rep	CDS	20443355	20443447	.	+	0	Parent=Os05t0417300-01
Chr05	irgsp1_rep	CDS	20444365	20444578	.	+	0	Parent=Os05t0417300-01
Chr05	irgsp1_rep	CDS	20444802	20444878	.	+	2	Parent=Os05t0417300-01
Chr05	irgsp1_rep	CDS	20445313	20445423	.	+	0	Parent=Os05t0417300-01
Chr05	irgsp1_rep	CDS	20445529	20445690	.	+	0	Parent=Os05t0417300-01
Chr05	irgsp1_rep	three_prime_UTR	20445691	20446076	.	+	.	Parent=Os05t0417300-01
Chr05	irgsp1_rep	mRNA	20442785	20446012	.	+	.	ID=Os05t0417300-02;Name=Os05t0417300-02;Locus_id=Os05g0417300;Note=Conserved hypothetical protein.;Transcript_evidence=AK073207 (DDBJ%2C Best hit);ORF_evidence=B8AYA9 (UniProt);NIAS_FLcDNA=J033011P22;Expression=AK073207;TENOR=Os05t0417300-02;KEGG=Os05t0417300-02
Chr05	irgsp1_rep	five_prime_UTR	20442785	20442904	.	+	.	Parent=Os05t0417300-02
Chr05	irgsp1_rep	CDS	20442905	20442970	.	+	0	Parent=Os05t0417300-02
Chr05	irgsp1_rep	CDS	20443355	20443447	.	+	0	Parent=Os05t0417300-02
Chr05	irgsp1_rep	CDS	20444365	20444578	.	+	0	Parent=Os05t0417300-02
Chr05	irgsp1_rep	CDS	20444802	20444878	.	+	2	Parent=Os05t0417300-02
Chr05	irgsp1_rep	CDS	20445313	20445423	.	+	0	Parent=Os05t0417300-02
Chr05	irgsp1_rep	CDS	20445529	20445690	.	+	0	Parent=Os05t0417300-02
Chr05	irgsp1_rep	three_prime_UTR	20445691	20446012	.	+	.	Parent=Os05t0417300-02
Chr05	irgsp1_rep	mRNA	20455518	20456205	.	+	.	ID=Os05t0417600-01;Name=Os05t0417600-01;Locus_id=Os05g0417600;Note=Conserved hypothetical protein.;Transcript_evidence=AK068601 (DDBJ%2C Best hit);ORF_evidence=B8AYB1 (UniProt);NIAS_FLcDNA=J013153B01;Expression=AK068601;TENOR=Os05t0417600-01;KEGG=Os05t0417600-01
Chr05	irgsp1_rep	five_prime_UTR	20455518	20455570	.	+	.	Parent=Os05t0417600-01
Chr05	irgsp1_rep	CDS	20455571	20455909	.	+	0	Parent=Os05t0417600-01
Chr05	irgsp1_rep	three_prime_UTR	20455910	20456205	.	+	.	Parent=Os05t0417600-01
Chr05	irgsp1_rep	mRNA	20457219	20457822	.	+	.	ID=Os05t0417700-01;Name=Os05t0417700-01;Locus_id=Os05g0417700;Note=Hypothetical conserved gene.;Transcript_evidence=AK242629 (DDBJ%2C Best hit);ORF_evidence=NP_001055565.2 (RefSeq);NIAS_FLcDNA=J090021H09;TENOR=Os05t0417700-01;KEGG=Os05t0417700-01
Chr05	irgsp1_rep	five_prime_UTR	20457219	20457317	.	+	.	Parent=Os05t0417700-01
Chr05	irgsp1_rep	CDS	20457318	20457692	.	+	0	Parent=Os05t0417700-01
Chr05	irgsp1_rep	three_prime_UTR	20457693	20457822	.	+	.	Parent=Os05t0417700-01
Chr05	irgsp1_rep	mRNA	20471167	20471460	.	-	.	ID=Os05t0417900-00;Name=Os05t0417900-00;Locus_id=Os05g0417900;Note=Hypothetical protein.;Transcript_evidence=FP099920 (DDBJ);ORF_evidence=GeneMark;TENOR=Os05t0417900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	20471460	20471460	.	-	.	Parent=Os05t0417900-00
Chr05	irgsp1_rep	CDS	20471167	20471459	.	-	0	Parent=Os05t0417900-00
Chr05	irgsp1_rep	mRNA	20477376	20483599	.	+	.	ID=Os05t0418000-01;Name=Os05t0418000-01;Locus_id=Os05g0418000;Oryzabase Gene Symbol Synonym(s)=OsGDI1%2C GDI1;Oryzabase Gene Name Synonym(s)=GDP dissociation inhibitor 1%2C GDP dissociation inhibitor1%2C GDP dissociation inhibitor protein OsGDI1%2C GDP-dissociation inhibitor 1;Note=GDP dissociation inhibitor protein OsGDI1.;Transcript_evidence=AK066648 (DDBJ%2C Best hit);ORF_evidence=O22470 (UniProt);GO=Biological Process: protein transport (GO:0015031),Molecular Function: Rab GDP-dissociation inhibitor activity (GO:0005093);InterPro=Rab GDI protein (IPR000806),GDP dissociation inhibitor (IPR018203);NIAS_FLcDNA=J013071E21;Oryzabase=11435;Expression=AK066648;TENOR=Os05t0418000-01;KEGG=Os05t0418000-01
Chr05	irgsp1_rep	five_prime_UTR	20477376	20477488	.	+	.	Parent=Os05t0418000-01
Chr05	irgsp1_rep	CDS	20477489	20477575	.	+	0	Parent=Os05t0418000-01
Chr05	irgsp1_rep	CDS	20479294	20479356	.	+	0	Parent=Os05t0418000-01
Chr05	irgsp1_rep	CDS	20479522	20479605	.	+	0	Parent=Os05t0418000-01
Chr05	irgsp1_rep	CDS	20479966	20480073	.	+	0	Parent=Os05t0418000-01
Chr05	irgsp1_rep	CDS	20480215	20480387	.	+	0	Parent=Os05t0418000-01
Chr05	irgsp1_rep	CDS	20481381	20481492	.	+	1	Parent=Os05t0418000-01
Chr05	irgsp1_rep	CDS	20481714	20481794	.	+	0	Parent=Os05t0418000-01
Chr05	irgsp1_rep	CDS	20481881	20481943	.	+	0	Parent=Os05t0418000-01
Chr05	irgsp1_rep	CDS	20482025	20482126	.	+	0	Parent=Os05t0418000-01
Chr05	irgsp1_rep	CDS	20482316	20482440	.	+	0	Parent=Os05t0418000-01
Chr05	irgsp1_rep	CDS	20482563	20482773	.	+	1	Parent=Os05t0418000-01
Chr05	irgsp1_rep	CDS	20482871	20482945	.	+	0	Parent=Os05t0418000-01
Chr05	irgsp1_rep	CDS	20483236	20483289	.	+	0	Parent=Os05t0418000-01
Chr05	irgsp1_rep	three_prime_UTR	20483290	20483599	.	+	.	Parent=Os05t0418000-01
Chr05	irgsp1_rep	mRNA	20484964	20490119	.	-	.	ID=Os05t0418100-01;Name=Os05t0418100-01;Locus_id=Os05g0418100;CGSNL Gene Symbol=MLO_;CGSNL Gene Name=POWDERY-MILDEW-RESISTANCE GENE O_;Oryzabase Gene Symbol Synonym(s)=OsMLO9%2C MLO9;Oryzabase Gene Name Synonym(s)=powdery-MiLdew-resistance gene O9%2C Mildew resistance Locus O-9;Note=Similar to Seven trans-membrane protein.;Transcript_evidence=AK121347 (DDBJ%2C Best hit);ORF_evidence=E2RZR5 (UniProt);GO=Biological Process: cell death (GO:0008219),Cellular Component: integral to membrane (GO:0016021);InterPro=Mlo-related protein (IPR004326);NIAS_FLcDNA=J023121J07;Oryzabase=9192;TENOR=Os05t0418100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	20490069	20490119	.	-	.	Parent=Os05t0418100-01
Chr05	irgsp1_rep	CDS	20489952	20490068	.	-	0	Parent=Os05t0418100-01
Chr05	irgsp1_rep	CDS	20489771	20489828	.	-	0	Parent=Os05t0418100-01
Chr05	irgsp1_rep	CDS	20488843	20489138	.	-	2	Parent=Os05t0418100-01
Chr05	irgsp1_rep	three_prime_UTR	20487744	20488842	.	-	.	Parent=Os05t0418100-01
Chr05	irgsp1_rep	three_prime_UTR	20487479	20487553	.	-	.	Parent=Os05t0418100-01
Chr05	irgsp1_rep	three_prime_UTR	20487315	20487403	.	-	.	Parent=Os05t0418100-01
Chr05	irgsp1_rep	three_prime_UTR	20487155	20487204	.	-	.	Parent=Os05t0418100-01
Chr05	irgsp1_rep	three_prime_UTR	20486960	20487000	.	-	.	Parent=Os05t0418100-01
Chr05	irgsp1_rep	three_prime_UTR	20486046	20486255	.	-	.	Parent=Os05t0418100-01
Chr05	irgsp1_rep	three_prime_UTR	20485898	20485965	.	-	.	Parent=Os05t0418100-01
Chr05	irgsp1_rep	three_prime_UTR	20485755	20485815	.	-	.	Parent=Os05t0418100-01
Chr05	irgsp1_rep	three_prime_UTR	20484964	20485668	.	-	.	Parent=Os05t0418100-01
Chr05	irgsp1_rep	mRNA	20498729	20500703	.	-	.	ID=Os05t0418500-00;Name=Os05t0418500-00;Locus_id=Os05g0418500;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=CT828040 (DDBJ%2C Best hit);ORF_evidence=NP_001068407.1 (RefSeq);InterPro=Pentatricopeptide repeat (IPR002885);TENOR=Os05t0418500-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	20500464	20500703	.	-	.	Parent=Os05t0418500-00
Chr05	irgsp1_rep	CDS	20499927	20500463	.	-	0	Parent=Os05t0418500-00
Chr05	irgsp1_rep	three_prime_UTR	20498729	20499926	.	-	.	Parent=Os05t0418500-00
Chr05	irgsp1_rep	mRNA	20505491	20506125	.	+	.	ID=Os05t0418600-00;Name=Os05t0418600-00;Locus_id=Os05g0418600;Note=Hypothetical conserved gene.;Transcript_evidence=CT836453 (DDBJ%2C Best hit);ORF_evidence=Q688J8 (UniProt);TENOR=Os05t0418600-00;KEGG=Os05t0418600-00
Chr05	irgsp1_rep	five_prime_UTR	20505491	20505491	.	+	.	Parent=Os05t0418600-00
Chr05	irgsp1_rep	CDS	20505492	20506016	.	+	0	Parent=Os05t0418600-00
Chr05	irgsp1_rep	three_prime_UTR	20506017	20506125	.	+	.	Parent=Os05t0418600-00
Chr05	irgsp1_rep	mRNA	20516577	20519072	.	-	.	ID=Os05t0418800-00;Name=Os05t0418800-00;Locus_id=Os05g0418800;CGSNL Gene Symbol=NAC87;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 87;Oryzabase Gene Symbol Synonym(s)=ONAC087%2C ONAC87;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 087%2C NAC domain-containing protein 87;Note=No apical meristem (NAM) protein domain containing protein.;Transcript_evidence=FP094137 (DDBJ);ORF_evidence=Q60DW6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);Oryzabase=15854;TENOR=Os05t0418800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	20518604	20519072	.	-	0	Parent=Os05t0418800-00
Chr05	irgsp1_rep	CDS	20518238	20518512	.	-	2	Parent=Os05t0418800-00
Chr05	irgsp1_rep	CDS	20516624	20517340	.	-	0	Parent=Os05t0418800-00
Chr05	irgsp1_rep	three_prime_UTR	20516577	20516623	.	-	.	Parent=Os05t0418800-00
Chr05	irgsp1_rep	mRNA	20519776	20523629	.	+	.	ID=Os05t0418901-01;Name=Os05t0418901-01;Locus_id=Os05g0418901;Note=Hypothetical gene.;Transcript_evidence=AK288313 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090021D10;TENOR=Os05t0418901-01;KEGG=Os05t0418901-01
Chr05	irgsp1_rep	five_prime_UTR	20519776	20521003	.	+	.	Parent=Os05t0418901-01
Chr05	irgsp1_rep	CDS	20521004	20521252	.	+	0	Parent=Os05t0418901-01
Chr05	irgsp1_rep	three_prime_UTR	20521253	20523629	.	+	.	Parent=Os05t0418901-01
Chr05	irgsp1_rep	mRNA	20536382	20539797	.	-	.	ID=Os05t0419000-01;Name=Os05t0419000-01;Locus_id=Os05g0419000;CGSNL Gene Symbol=NHL3;CGSNL Gene Name=NYC3-LIKE 3;Note=Alpha/beta hydrolase family protein.;Transcript_evidence=AK067277 (DDBJ%2C Best hit);ORF_evidence=B6SU76 (UniProt);InterPro=Alpha/beta hydrolase fold-1 (IPR000073);NIAS_FLcDNA=J013099K07;Oryzabase=8686;Expression=AK067277;TENOR=Os05t0419000-01;KEGG=Os05t0419000-01
Chr05	irgsp1_rep	five_prime_UTR	20539734	20539797	.	-	.	Parent=Os05t0419000-01
Chr05	irgsp1_rep	CDS	20539327	20539733	.	-	0	Parent=Os05t0419000-01
Chr05	irgsp1_rep	CDS	20539000	20539111	.	-	1	Parent=Os05t0419000-01
Chr05	irgsp1_rep	CDS	20538495	20538588	.	-	0	Parent=Os05t0419000-01
Chr05	irgsp1_rep	CDS	20537858	20538036	.	-	2	Parent=Os05t0419000-01
Chr05	irgsp1_rep	CDS	20537482	20537550	.	-	0	Parent=Os05t0419000-01
Chr05	irgsp1_rep	CDS	20536728	20537078	.	-	0	Parent=Os05t0419000-01
Chr05	irgsp1_rep	three_prime_UTR	20536382	20536727	.	-	.	Parent=Os05t0419000-01
Chr05	irgsp1_rep	mRNA	20542374	20542911	.	-	.	ID=Os05t0419050-00;Name=Os05t0419050-00;Locus_id=Os05g0419050;Note=Hypothetical gene.;Transcript_evidence=EU949871 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0419050-00;KEGG=Os05t0419050-00
Chr05	irgsp1_rep	five_prime_UTR	20542911	20542911	.	-	.	Parent=Os05t0419050-00
Chr05	irgsp1_rep	CDS	20542638	20542910	.	-	0	Parent=Os05t0419050-00
Chr05	irgsp1_rep	three_prime_UTR	20542374	20542637	.	-	.	Parent=Os05t0419050-00
Chr05	irgsp1_rep	mRNA	20542371	20546991	.	+	.	ID=Os05t0419100-01;Name=Os05t0419100-01;Locus_id=Os05g0419100;Note=Similar to Nucleic acid binding protein-like.;Transcript_evidence=AK121400 (DDBJ%2C Best hit);ORF_evidence=NP_001150003.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-type%2C conserved site (IPR019786),Zinc finger%2C PHD-finger (IPR019787),Protein of unknown function DUF3594 (IPR021998);NIAS_FLcDNA=J023131M22;Expression=AK121400;TENOR=Os05t0419100-01;KEGG=Os05t0419100-01
Chr05	irgsp1_rep	five_prime_UTR	20542371	20542492	.	+	.	Parent=Os05t0419100-01
Chr05	irgsp1_rep	CDS	20542493	20542595	.	+	0	Parent=Os05t0419100-01
Chr05	irgsp1_rep	CDS	20542740	20542772	.	+	2	Parent=Os05t0419100-01
Chr05	irgsp1_rep	CDS	20543456	20543684	.	+	2	Parent=Os05t0419100-01
Chr05	irgsp1_rep	CDS	20546301	20546430	.	+	1	Parent=Os05t0419100-01
Chr05	irgsp1_rep	CDS	20546497	20546778	.	+	0	Parent=Os05t0419100-01
Chr05	irgsp1_rep	three_prime_UTR	20546779	20546991	.	+	.	Parent=Os05t0419100-01
Chr05	irgsp1_rep	mRNA	20548402	20553184	.	-	.	ID=Os05t0419200-01;Name=Os05t0419200-01;Locus_id=Os05g0419200;CGSNL Gene Symbol=RUS6B;CGSNL Gene Name=ROOT UV-B SENSITIVE 6B;Oryzabase Gene Symbol Synonym(s)=OsRUS6B;Note=Protein of unknown function DUF647 family protein.;Transcript_evidence=AK071273 (DDBJ%2C Best hit);ORF_evidence=NP_568713.1 (RefSeq);InterPro=Protein of unknown function DUF647 (IPR006968);NIAS_FLcDNA=J023087G18;Oryzabase=21452;Expression=AK071273;TENOR=Os05t0419200-01;KEGG=Os05t0419200-01
Chr05	irgsp1_rep	five_prime_UTR	20553116	20553184	.	-	.	Parent=Os05t0419200-01
Chr05	irgsp1_rep	five_prime_UTR	20552772	20552874	.	-	.	Parent=Os05t0419200-01
Chr05	irgsp1_rep	CDS	20552718	20552771	.	-	0	Parent=Os05t0419200-01
Chr05	irgsp1_rep	CDS	20551669	20551767	.	-	0	Parent=Os05t0419200-01
Chr05	irgsp1_rep	CDS	20551474	20551587	.	-	0	Parent=Os05t0419200-01
Chr05	irgsp1_rep	CDS	20551135	20551206	.	-	0	Parent=Os05t0419200-01
Chr05	irgsp1_rep	CDS	20550936	20551046	.	-	0	Parent=Os05t0419200-01
Chr05	irgsp1_rep	CDS	20550683	20550802	.	-	0	Parent=Os05t0419200-01
Chr05	irgsp1_rep	CDS	20550393	20550494	.	-	0	Parent=Os05t0419200-01
Chr05	irgsp1_rep	CDS	20550229	20550301	.	-	0	Parent=Os05t0419200-01
Chr05	irgsp1_rep	CDS	20549797	20549877	.	-	2	Parent=Os05t0419200-01
Chr05	irgsp1_rep	CDS	20549646	20549710	.	-	2	Parent=Os05t0419200-01
Chr05	irgsp1_rep	CDS	20549437	20549538	.	-	0	Parent=Os05t0419200-01
Chr05	irgsp1_rep	CDS	20549154	20549339	.	-	0	Parent=Os05t0419200-01
Chr05	irgsp1_rep	CDS	20548949	20549017	.	-	0	Parent=Os05t0419200-01
Chr05	irgsp1_rep	three_prime_UTR	20548781	20548948	.	-	.	Parent=Os05t0419200-01
Chr05	irgsp1_rep	three_prime_UTR	20548402	20548689	.	-	.	Parent=Os05t0419200-01
Chr05	irgsp1_rep	mRNA	20548402	20550495	.	-	.	ID=Os05t0419200-02;Name=Os05t0419200-02;Locus_id=Os05g0419200;CGSNL Gene Symbol=RUS6B;CGSNL Gene Name=ROOT UV-B SENSITIVE 6B;Oryzabase Gene Symbol Synonym(s)=OsRUS6B;Note=Similar to predicted protein.;Transcript_evidence=AK119214 (DDBJ%2C Best hit);ORF_evidence=NP_568713.1 (RefSeq);InterPro=Protein of unknown function DUF647 (IPR006968);NIAS_FLcDNA=001-041-E08;Oryzabase=21452;Expression=AK119214;TENOR=Os05t0419200-02;KEGG=Os05t0419200-02
Chr05	irgsp1_rep	five_prime_UTR	20550495	20550495	.	-	.	Parent=Os05t0419200-02
Chr05	irgsp1_rep	CDS	20550393	20550494	.	-	0	Parent=Os05t0419200-02
Chr05	irgsp1_rep	CDS	20550229	20550301	.	-	0	Parent=Os05t0419200-02
Chr05	irgsp1_rep	CDS	20549797	20549877	.	-	2	Parent=Os05t0419200-02
Chr05	irgsp1_rep	CDS	20549646	20549710	.	-	2	Parent=Os05t0419200-02
Chr05	irgsp1_rep	CDS	20549437	20549538	.	-	0	Parent=Os05t0419200-02
Chr05	irgsp1_rep	CDS	20549154	20549339	.	-	0	Parent=Os05t0419200-02
Chr05	irgsp1_rep	CDS	20548949	20549017	.	-	0	Parent=Os05t0419200-02
Chr05	irgsp1_rep	three_prime_UTR	20548781	20548948	.	-	.	Parent=Os05t0419200-02
Chr05	irgsp1_rep	three_prime_UTR	20548402	20548689	.	-	.	Parent=Os05t0419200-02
Chr05	irgsp1_rep	mRNA	20548402	20548922	.	-	.	ID=Os05t0419200-03;Name=Os05t0419200-03;Locus_id=Os05g0419200;CGSNL Gene Symbol=RUS6B;CGSNL Gene Name=ROOT UV-B SENSITIVE 6B;Oryzabase Gene Symbol Synonym(s)=OsRUS6B;Note=Non-protein coding transcript.;Transcript_evidence=AK058398 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-015-B03;Oryzabase=21452;TENOR=Os05t0419200-03
Chr05	irgsp1_rep	exon	20548781	20548922	.	-	.	Parent=Os05t0419200-03
Chr05	irgsp1_rep	exon	20548402	20548689	.	-	.	Parent=Os05t0419200-03
Chr05	irgsp1_rep	mRNA	20558018	20558523	.	+	.	ID=Os05t0419301-01;Name=Os05t0419301-01;Locus_id=Os05g0419301;Note=Hypothetical gene.;Transcript_evidence=AK241151 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065113E16;TENOR=Os05t0419301-01;KEGG=Os05t0419301-01
Chr05	irgsp1_rep	five_prime_UTR	20558018	20558269	.	+	.	Parent=Os05t0419301-01
Chr05	irgsp1_rep	CDS	20558270	20558482	.	+	0	Parent=Os05t0419301-01
Chr05	irgsp1_rep	three_prime_UTR	20558483	20558523	.	+	.	Parent=Os05t0419301-01
Chr05	irgsp1_rep	mRNA	20568922	20573378	.	-	.	ID=Os05t0419500-01;Name=Os05t0419500-01;Locus_id=Os05g0419500;Note=K Homology domain containing protein.;Transcript_evidence=AK073986 (DDBJ%2C Best hit);ORF_evidence=NP_001148920.1 (RefSeq);GO=Molecular Function: RNA binding (GO:0003723);InterPro=K Homology (IPR004087);NIAS_FLcDNA=J033072E16;Expression=AK073986;TENOR=Os05t0419500-01;KEGG=Os05t0419500-01
Chr05	irgsp1_rep	five_prime_UTR	20573136	20573378	.	-	.	Parent=Os05t0419500-01
Chr05	irgsp1_rep	CDS	20573026	20573135	.	-	0	Parent=Os05t0419500-01
Chr05	irgsp1_rep	CDS	20572454	20572539	.	-	1	Parent=Os05t0419500-01
Chr05	irgsp1_rep	CDS	20571779	20571924	.	-	2	Parent=Os05t0419500-01
Chr05	irgsp1_rep	CDS	20570965	20571078	.	-	0	Parent=Os05t0419500-01
Chr05	irgsp1_rep	CDS	20570752	20570868	.	-	0	Parent=Os05t0419500-01
Chr05	irgsp1_rep	CDS	20569661	20569804	.	-	0	Parent=Os05t0419500-01
Chr05	irgsp1_rep	CDS	20569387	20569545	.	-	0	Parent=Os05t0419500-01
Chr05	irgsp1_rep	three_prime_UTR	20568922	20569386	.	-	.	Parent=Os05t0419500-01
Chr05	irgsp1_rep	mRNA	20581072	20583157	.	-	.	ID=Os05t0419600-01;Name=Os05t0419600-01;Locus_id=Os05g0419600;Note=Conserved hypothetical protein.;Transcript_evidence=AK243604 (DDBJ%2C Best hit);ORF_evidence=A2Y4S2 (UniProt);NIAS_FLcDNA=J100085D10;TENOR=Os05t0419600-01;KEGG=Os05t0419600-01
Chr05	irgsp1_rep	five_prime_UTR	20582913	20583157	.	-	.	Parent=Os05t0419600-01
Chr05	irgsp1_rep	CDS	20582822	20582912	.	-	0	Parent=Os05t0419600-01
Chr05	irgsp1_rep	CDS	20582026	20582255	.	-	2	Parent=Os05t0419600-01
Chr05	irgsp1_rep	three_prime_UTR	20581987	20582025	.	-	.	Parent=Os05t0419600-01
Chr05	irgsp1_rep	three_prime_UTR	20581072	20581295	.	-	.	Parent=Os05t0419600-01
Chr05	irgsp1_rep	mRNA	20586257	20590851	.	+	.	ID=Os05t0419800-01;Name=Os05t0419800-01;Locus_id=Os05g0419800;CGSNL Gene Symbol=GELP67;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 67;Oryzabase Gene Symbol Synonym(s)=OsGELP67%2C OsGELP67a%2C OsGELP67b;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 67;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK100958 (DDBJ%2C Best hit);ORF_evidence=NP_001150393.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=J023140K23;Oryzabase=11017;Expression=AK100958;TENOR=Os05t0419800-01;KEGG=Os05t0419800-01
Chr05	irgsp1_rep	five_prime_UTR	20586257	20586286	.	+	.	Parent=Os05t0419800-01
Chr05	irgsp1_rep	CDS	20586287	20586620	.	+	0	Parent=Os05t0419800-01
Chr05	irgsp1_rep	CDS	20588758	20588879	.	+	2	Parent=Os05t0419800-01
Chr05	irgsp1_rep	CDS	20589027	20589275	.	+	0	Parent=Os05t0419800-01
Chr05	irgsp1_rep	CDS	20589546	20589795	.	+	0	Parent=Os05t0419800-01
Chr05	irgsp1_rep	CDS	20590282	20590508	.	+	2	Parent=Os05t0419800-01
Chr05	irgsp1_rep	three_prime_UTR	20590509	20590851	.	+	.	Parent=Os05t0419800-01
Chr05	irgsp1_rep	mRNA	20591346	20592137	.	+	.	ID=Os05t0420000-01;Name=Os05t0420000-01;Locus_id=Os05g0420000;Note=Hypothetical protein.;Transcript_evidence=AK062325 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-101-D03;Expression=AK062325;TENOR=Os05t0420000-01;KEGG=Os05t0420000-01
Chr05	irgsp1_rep	five_prime_UTR	20591346	20591367	.	+	.	Parent=Os05t0420000-01
Chr05	irgsp1_rep	CDS	20591368	20591823	.	+	0	Parent=Os05t0420000-01
Chr05	irgsp1_rep	three_prime_UTR	20591824	20592137	.	+	.	Parent=Os05t0420000-01
Chr05	irgsp1_rep	mRNA	20595690	20598798	.	+	.	ID=Os05t0420200-01;Name=Os05t0420200-01;Locus_id=Os05g0420200;Note=Protein of unknown function DUF179 family protein.;Transcript_evidence=AK067880 (DDBJ%2C Best hit);ORF_evidence=B8AYC4 (UniProt);InterPro=Protein of unknown function DUF179 (IPR003774);NIAS_FLcDNA=J013122J01;Expression=AK067880;TENOR=Os05t0420200-01;KEGG=Os05t0420200-01
Chr05	irgsp1_rep	five_prime_UTR	20595690	20595742	.	+	.	Parent=Os05t0420200-01
Chr05	irgsp1_rep	CDS	20595743	20595986	.	+	0	Parent=Os05t0420200-01
Chr05	irgsp1_rep	CDS	20596998	20597128	.	+	2	Parent=Os05t0420200-01
Chr05	irgsp1_rep	CDS	20597915	20598598	.	+	0	Parent=Os05t0420200-01
Chr05	irgsp1_rep	three_prime_UTR	20598599	20598798	.	+	.	Parent=Os05t0420200-01
Chr05	irgsp1_rep	mRNA	20601261	20601854	.	-	.	ID=Os05t0420300-01;Name=Os05t0420300-01;Locus_id=Os05g0420300;RAP-DB Gene Symbol Synonym(s)=ERF131%2C SERF1%2C OsERF#131%2C OsERF131%2C AP2/EREBP#094%2C AP2/EREBP94;RAP-DB Gene Name Synonym(s)=ETHYLENE RESPONSE FACTOR 131%2C SALT-RESPONSIVE ERF1%2C ethylene response factor 131%2C APETALA2/ethylene-responsive element binding protein 94;CGSNL Gene Symbol=ERF131;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 131;Oryzabase Gene Symbol Synonym(s)=OsERF#131%2C OsERF131%2C AP2/EREBP#094%2C AP2/EREBP94%2C SERF1%2C OsSERF1;Oryzabase Gene Name Synonym(s)=ethylene response factor 131%2C APETALA2/ethylene-responsive element binding protein 94%2C SALT-RESPONSIVE ERF1;Note=Salt- and H2O2- responsive transcription factor%2C Salt tolerance;Transcript_evidence=Inferred from literature;ORF_evidence=Q60DV7;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=DNA-binding domain (IPR016177),AP2/ERF domain (IPR001471);Manual Curation=December 8%2C 2013;Literature_PMID=23800963;Oryzabase=10624;TENOR=Os05t0420300-00
Chr05	irgsp1_rep	CDS	20601261	20601854	.	-	0	Parent=Os05t0420300-01
Chr05	irgsp1_rep	mRNA	20620923	20628290	.	+	.	ID=Os05t0420500-01;Name=Os05t0420500-01;Locus_id=Os05g0420500;Note=Conserved hypothetical protein.;Transcript_evidence=AK070104 (DDBJ%2C Best hit);ORF_evidence=B9FIP6 (UniProt);NIAS_FLcDNA=J023045K24;Expression=AK070104;TENOR=Os05t0420500-01;KEGG=Os05t0420500-01
Chr05	irgsp1_rep	five_prime_UTR	20620923	20621411	.	+	.	Parent=Os05t0420500-01
Chr05	irgsp1_rep	five_prime_UTR	20623874	20623927	.	+	.	Parent=Os05t0420500-01
Chr05	irgsp1_rep	CDS	20623928	20623999	.	+	0	Parent=Os05t0420500-01
Chr05	irgsp1_rep	CDS	20624382	20625059	.	+	0	Parent=Os05t0420500-01
Chr05	irgsp1_rep	CDS	20625389	20626441	.	+	0	Parent=Os05t0420500-01
Chr05	irgsp1_rep	CDS	20626591	20626652	.	+	0	Parent=Os05t0420500-01
Chr05	irgsp1_rep	CDS	20626737	20626787	.	+	1	Parent=Os05t0420500-01
Chr05	irgsp1_rep	CDS	20626881	20627100	.	+	1	Parent=Os05t0420500-01
Chr05	irgsp1_rep	three_prime_UTR	20627101	20627588	.	+	.	Parent=Os05t0420500-01
Chr05	irgsp1_rep	three_prime_UTR	20627718	20627809	.	+	.	Parent=Os05t0420500-01
Chr05	irgsp1_rep	three_prime_UTR	20627950	20628290	.	+	.	Parent=Os05t0420500-01
Chr05	irgsp1_rep	mRNA	20630043	20632322	.	+	.	ID=Os05t0420600-01;Name=Os05t0420600-01;Locus_id=Os05g0420600;CGSNL Gene Symbol=CC1;CGSNL Gene Name=CYTOCHROME C 1;Oryzabase Gene Symbol Synonym(s)=OsCc1%2C OsCc-1;Oryzabase Gene Name Synonym(s)=cytoChrome c;Note=CytoChrome c.;Transcript_evidence=AK060267 (DDBJ%2C Best hit);ORF_evidence=Q0DI31 (UniProt);GO=Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome c%2C class IA/ IB (IPR002327),CytoChrome c%2C class I (IPR003088),CytoChrome c domain (IPR009056);NIAS_FLcDNA=001-005-D04;Oryzabase=6107;Expression=AK060267;TENOR=Os05t0420600-01;KEGG=Os05t0420600-01
Chr05	irgsp1_rep	five_prime_UTR	20630043	20630129	.	+	.	Parent=Os05t0420600-01
Chr05	irgsp1_rep	CDS	20630130	20630241	.	+	0	Parent=Os05t0420600-01
Chr05	irgsp1_rep	CDS	20631064	20631197	.	+	2	Parent=Os05t0420600-01
Chr05	irgsp1_rep	CDS	20631914	20632006	.	+	0	Parent=Os05t0420600-01
Chr05	irgsp1_rep	three_prime_UTR	20632007	20632322	.	+	.	Parent=Os05t0420600-01
Chr05	irgsp1_rep	mRNA	20636525	20646564	.	-	.	ID=Os05t0420750-00;Name=Os05t0420750-00;Locus_id=Os05g0420750;Note=Hypothetical protein.;Transcript_evidence=tplb0059e14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0420750-00
Chr05	irgsp1_rep	five_prime_UTR	20646414	20646564	.	-	.	Parent=Os05t0420750-00
Chr05	irgsp1_rep	five_prime_UTR	20646119	20646272	.	-	.	Parent=Os05t0420750-00
Chr05	irgsp1_rep	five_prime_UTR	20640751	20640910	.	-	.	Parent=Os05t0420750-00
Chr05	irgsp1_rep	five_prime_UTR	20640354	20640525	.	-	.	Parent=Os05t0420750-00
Chr05	irgsp1_rep	CDS	20640027	20640353	.	-	0	Parent=Os05t0420750-00
Chr05	irgsp1_rep	three_prime_UTR	20639646	20640026	.	-	.	Parent=Os05t0420750-00
Chr05	irgsp1_rep	three_prime_UTR	20638678	20638894	.	-	.	Parent=Os05t0420750-00
Chr05	irgsp1_rep	three_prime_UTR	20637495	20637542	.	-	.	Parent=Os05t0420750-00
Chr05	irgsp1_rep	three_prime_UTR	20636525	20636746	.	-	.	Parent=Os05t0420750-00
Chr05	irgsp1_rep	mRNA	20636382	20643355	.	+	.	ID=Os05t0420800-01;Name=Os05t0420800-01;Locus_id=Os05g0420800;RAP-DB Gene Symbol Synonym(s)=PMR;RAP-DB Gene Name Synonym(s)=Pollen Mitosis Relative;CGSNL Gene Symbol=PMR;CGSNL Gene Name=POLLEN MITOSIS RELATIVE;Oryzabase Gene Symbol Synonym(s)=OsPMR;Oryzabase Gene Name Synonym(s)=Pollen Mitosis Relative;Note=Regulation of male gametogenesis during pollen development;Transcript_evidence=Inferred from literature;ORF_evidence=Q6L4Z0;GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C PHD-type (IPR001965),SWIB/MDM2 domain (IPR003121),Plus-3 domain (IPR004343);Manual Curation=June 23%2C 2017;Literature_PMID=28299429;Oryzabase=22591
Chr05	irgsp1_rep	five_prime_UTR	20636382	20636579	.	+	.	Parent=Os05t0420800-01
Chr05	irgsp1_rep	CDS	20636580	20636740	.	+	0	Parent=Os05t0420800-01
Chr05	irgsp1_rep	CDS	20637491	20637570	.	+	1	Parent=Os05t0420800-01
Chr05	irgsp1_rep	CDS	20638702	20638895	.	+	2	Parent=Os05t0420800-01
Chr05	irgsp1_rep	CDS	20639647	20640514	.	+	0	Parent=Os05t0420800-01
Chr05	irgsp1_rep	CDS	20642796	20643355	.	+	2	Parent=Os05t0420800-01
Chr05	irgsp1_rep	mRNA	20648285	20650528	.	-	.	ID=Os05t0420900-01;Name=Os05t0420900-01;Locus_id=Os05g0420900;Note=Conserved hypothetical protein.;Transcript_evidence=AK099601 (DDBJ%2C Best hit);ORF_evidence=B9FIP8 (UniProt);NIAS_FLcDNA=J013047F07;Expression=AK099601;TENOR=Os05t0420900-01;KEGG=Os05t0420900-01
Chr05	irgsp1_rep	five_prime_UTR	20650522	20650528	.	-	.	Parent=Os05t0420900-01
Chr05	irgsp1_rep	CDS	20649760	20650521	.	-	0	Parent=Os05t0420900-01
Chr05	irgsp1_rep	three_prime_UTR	20648285	20649759	.	-	.	Parent=Os05t0420900-01
Chr05	irgsp1_rep	mRNA	20648628	20649038	.	+	.	ID=Os05t0421000-01;Name=Os05t0421000-01;Locus_id=Os05g0421000;Note=Hypothetical conserved gene.;Transcript_evidence=AK062742 (DDBJ%2C Best hit);ORF_evidence=Q6L4Y9 (UniProt);NIAS_FLcDNA=001-106-F04;Expression=AK062742;TENOR=Os05t0421000-01;KEGG=Os05t0421000-01
Chr05	irgsp1_rep	five_prime_UTR	20648628	20648628	.	+	.	Parent=Os05t0421000-01
Chr05	irgsp1_rep	CDS	20648629	20648700	.	+	0	Parent=Os05t0421000-01
Chr05	irgsp1_rep	three_prime_UTR	20648701	20649038	.	+	.	Parent=Os05t0421000-01
Chr05	irgsp1_rep	mRNA	20651153	20651824	.	+	.	ID=Os05t0421100-00;Name=Os05t0421100-00;Locus_id=Os05g0421100;Note=Protein of unknown function DUF538 family protein.;Transcript_evidence=DQ244354 (DDBJ);ORF_evidence=NP_001055581.2 (RefSeq);InterPro=Protein of unknown function DUF538 (IPR007493);TENOR=Os05t0421100-00;KEGG=Os05t0421100-00
Chr05	irgsp1_rep	five_prime_UTR	20651153	20651251	.	+	.	Parent=Os05t0421100-00
Chr05	irgsp1_rep	CDS	20651252	20651824	.	+	0	Parent=Os05t0421100-00
Chr05	irgsp1_rep	mRNA	20663027	20668604	.	+	.	ID=Os05t0421300-01;Name=Os05t0421300-01;Locus_id=Os05g0421300;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=AK103376 (DDBJ%2C Best hit);ORF_evidence=NP_196582.2 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Tetratricopeptide-like helical (IPR011990),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033127B22;Expression=AK103376;TENOR=Os05t0421300-01;KEGG=Os05t0421300-01
Chr05	irgsp1_rep	five_prime_UTR	20663027	20663394	.	+	.	Parent=Os05t0421300-01
Chr05	irgsp1_rep	five_prime_UTR	20665349	20665409	.	+	.	Parent=Os05t0421300-01
Chr05	irgsp1_rep	CDS	20665410	20666378	.	+	0	Parent=Os05t0421300-01
Chr05	irgsp1_rep	CDS	20666850	20667686	.	+	0	Parent=Os05t0421300-01
Chr05	irgsp1_rep	three_prime_UTR	20667687	20667703	.	+	.	Parent=Os05t0421300-01
Chr05	irgsp1_rep	three_prime_UTR	20667914	20668604	.	+	.	Parent=Os05t0421300-01
Chr05	irgsp1_rep	mRNA	20666348	20668458	.	+	.	ID=Os05t0421300-02;Name=Os05t0421300-02;Locus_id=Os05g0421300;Note=Similar to predicted protein.;Transcript_evidence=AK058230 (DDBJ%2C Best hit);ORF_evidence=NP_196582.2 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-011-B05;Expression=AK058230;TENOR=Os05t0421300-02;KEGG=Os05t0421300-02
Chr05	irgsp1_rep	five_prime_UTR	20666348	20666348	.	+	.	Parent=Os05t0421300-02
Chr05	irgsp1_rep	CDS	20666349	20666378	.	+	0	Parent=Os05t0421300-02
Chr05	irgsp1_rep	CDS	20666850	20667686	.	+	0	Parent=Os05t0421300-02
Chr05	irgsp1_rep	three_prime_UTR	20667687	20667703	.	+	.	Parent=Os05t0421300-02
Chr05	irgsp1_rep	three_prime_UTR	20667914	20668458	.	+	.	Parent=Os05t0421300-02
Chr05	irgsp1_rep	mRNA	20678141	20678622	.	-	.	ID=Os05t0421450-00;Name=Os05t0421450-00;Locus_id=Os05g0421450;Note=Hypothetical protein.;Transcript_evidence=FP093663 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0421450-00
Chr05	irgsp1_rep	five_prime_UTR	20678517	20678622	.	-	.	Parent=Os05t0421450-00
Chr05	irgsp1_rep	CDS	20678256	20678516	.	-	0	Parent=Os05t0421450-00
Chr05	irgsp1_rep	three_prime_UTR	20678141	20678255	.	-	.	Parent=Os05t0421450-00
Chr05	irgsp1_rep	mRNA	20678578	20680160	.	+	.	ID=Os05t0421600-01;Name=Os05t0421600-01;Locus_id=Os05g0421600;CGSNL Gene Symbol=NAC88;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 88;Oryzabase Gene Symbol Synonym(s)=ONAC088%2C ONAC88;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 088%2C NAC domain-containing protein 88;Note=No apical meristem (NAM) protein domain containing protein.;Transcript_evidence=AK107746 (DDBJ%2C Best hit);ORF_evidence=Q4QWQ6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=002-132-H04;Oryzabase=15855;Expression=AK107746;TENOR=Os05t0421600-01;KEGG=Os05t0421600-01
Chr05	irgsp1_rep	CDS	20678578	20678637	.	+	0	Parent=Os05t0421600-01
Chr05	irgsp1_rep	CDS	20679380	20679880	.	+	0	Parent=Os05t0421600-01
Chr05	irgsp1_rep	three_prime_UTR	20679881	20680160	.	+	.	Parent=Os05t0421600-01
Chr05	irgsp1_rep	mRNA	20683551	20684336	.	-	.	ID=Os05t0421750-00;Name=Os05t0421750-00;Locus_id=Os05g0421750;Note=Similar to Glutamate decarboxylase.;Transcript_evidence=AF528524 (DDBJ);ORF_evidence=Q84U04 (UniProt);GO=Biological Process: glutamate metabolic process (GO:0006536),Biological Process: carboxylic acid metabolic process (GO:0019752),Molecular Function: glutamate decarboxylase activity (GO:0004351),Molecular Function: carboxy-lyase activity (GO:0016831),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent decarboxylase (IPR002129),Glutamate decarboxylase (IPR010107),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);TENOR=Os05t0421750-00;KEGG=Os05t0421750-00 (EC:4.1.1.15)
Chr05	irgsp1_rep	CDS	20683551	20684336	.	-	0	Parent=Os05t0421750-00
Chr05	irgsp1_rep	mRNA	20685488	20692048	.	-	.	ID=Os05t0421900-00;Name=Os05t0421900-00;Locus_id=Os05g0421900;RAP-DB Gene Symbol Synonym(s)=GA20OX4%2C OsGA20ox4%2C ga20ox4;RAP-DB Gene Name Synonym(s)=GIBBERELLIN 20-OXIDASE 4%2C rice GA 20-oxidase4%2C GA 20-oxidase 4%2C gibberellin C-20 oxidase 4%2C Putative gibberellin 20-dioxygenase 4;CGSNL Gene Symbol=PRL5;CGSNL Gene Name=PANICLE RACHIS LENGTH 5;Oryzabase Gene Symbol Synonym(s)=OsGA20ox4%2C ga20ox4%2C GA20ox2%2C Prl5%2C Prl5/GA20ox4%2C OsPrl5;Oryzabase Gene Name Synonym(s)=rice GA 20-oxidase4%2C GA 20-oxidase 4%2C gibberellin C-20 oxidase 4%2C Putative gibberellin 20-dioxygenase 4%2C PANICLE RACHIS LENGTH5;Note=GA 20-oxidase4%2C GA metabolism;Transcript_evidence=AC124836_AAT44252_11;ORF_evidence=Q6L4Y3 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);Manual Curation=June 1%2C 2009;Literature_PMID=15075394,18173378;Oryzabase=5113;TENOR=Os05t0421900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	20691465	20692048	.	-	0	Parent=Os05t0421900-00
Chr05	irgsp1_rep	CDS	20690676	20691000	.	-	1	Parent=Os05t0421900-00
Chr05	irgsp1_rep	CDS	20685488	20685805	.	-	0	Parent=Os05t0421900-00
Chr05	irgsp1_rep	mRNA	20712279	20713087	.	+	.	ID=Os05t0422200-00;Name=Os05t0422200-00;Locus_id=Os05g0422200;Note=Conserved hypothetical protein.;Transcript_evidence=FP099222 (DDBJ);ORF_evidence=NP_001055585.1 (RefSeq);TENOR=Os05t0422200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	20712279	20712570	.	+	0	Parent=Os05t0422200-00
Chr05	irgsp1_rep	CDS	20712669	20712994	.	+	2	Parent=Os05t0422200-00
Chr05	irgsp1_rep	three_prime_UTR	20712995	20713087	.	+	.	Parent=Os05t0422200-00
Chr05	irgsp1_rep	mRNA	20721494	20725966	.	-	.	ID=Os05t0422300-01;Name=Os05t0422300-01;Locus_id=Os05g0422300;CGSNL Gene Symbol=DLN139;CGSNL Gene Name=DLN REPRESSOR 139;Oryzabase Gene Symbol Synonym(s)=OsDLN139;Oryzabase Gene Name Synonym(s)=DLN repressor 139%2C DLN motif protein 139;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK111886 (DDBJ%2C Best hit);ORF_evidence=B9FPP3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),WD40 repeat (IPR001680),Zinc finger%2C RING-type (IPR001841),Protein kinase-like domain (IPR011009),WD40 repeat-like-containing domain (IPR011046),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),WD40/YVTN repeat-like-containing domain (IPR015943),Zinc finger%2C RING-type%2C conserved site (IPR017907),WD40-repeat-containing domain (IPR017986),Zinc finger%2C C3HC4 RING-type (IPR018957),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J033068K11;Oryzabase=23199;TENOR=Os05t0422300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	20725879	20725966	.	-	.	Parent=Os05t0422300-01
Chr05	irgsp1_rep	CDS	20724252	20725878	.	-	0	Parent=Os05t0422300-01
Chr05	irgsp1_rep	CDS	20723621	20723676	.	-	2	Parent=Os05t0422300-01
Chr05	irgsp1_rep	CDS	20723229	20723504	.	-	0	Parent=Os05t0422300-01
Chr05	irgsp1_rep	CDS	20722753	20722959	.	-	0	Parent=Os05t0422300-01
Chr05	irgsp1_rep	three_prime_UTR	20722751	20722752	.	-	.	Parent=Os05t0422300-01
Chr05	irgsp1_rep	three_prime_UTR	20722498	20722617	.	-	.	Parent=Os05t0422300-01
Chr05	irgsp1_rep	three_prime_UTR	20722247	20722375	.	-	.	Parent=Os05t0422300-01
Chr05	irgsp1_rep	three_prime_UTR	20721494	20721798	.	-	.	Parent=Os05t0422300-01
Chr05	irgsp1_rep	mRNA	20728020	20728733	.	-	.	ID=Os05t0422600-00;Name=Os05t0422600-00;Locus_id=Os05g0422600;Note=Hypothetical conserved gene.;Transcript_evidence=CU861691 (DDBJ%2C Best hit);ORF_evidence=Q60EP7 (UniProt);TENOR=Os05t0422600-00;KEGG=Os05t0422600-00
Chr05	irgsp1_rep	CDS	20728458	20728733	.	-	0	Parent=Os05t0422600-00
Chr05	irgsp1_rep	three_prime_UTR	20728020	20728457	.	-	.	Parent=Os05t0422600-00
Chr05	irgsp1_rep	mRNA	20737931	20741079	.	+	.	ID=Os05t0422900-01;Name=Os05t0422900-01;Locus_id=Os05g0422900;Note=Similar to helicase.;Transcript_evidence=AK073629 (DDBJ%2C Best hit);ORF_evidence=XP_002890750.1 (RefSeq);NIAS_FLcDNA=J033051N08;TENOR=Os05t0422900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	20737931	20738721	.	+	.	Parent=Os05t0422900-01
Chr05	irgsp1_rep	CDS	20738722	20738862	.	+	0	Parent=Os05t0422900-01
Chr05	irgsp1_rep	three_prime_UTR	20740387	20740515	.	+	.	Parent=Os05t0422900-01
Chr05	irgsp1_rep	three_prime_UTR	20740841	20741079	.	+	.	Parent=Os05t0422900-01
Chr05	irgsp1_rep	mRNA	20748871	20752589	.	+	.	ID=Os05t0423200-01;Name=Os05t0423200-01;Locus_id=Os05g0423200;Note=Conserved hypothetical protein.;Transcript_evidence=AK110840 (DDBJ%2C Best hit);ORF_evidence=B9FPP5 (UniProt);NIAS_FLcDNA=002-172-B05;Expression=AK110840;TENOR=Os05t0423200-01;KEGG=Os05t0423200-01
Chr05	irgsp1_rep	five_prime_UTR	20748871	20749164	.	+	.	Parent=Os05t0423200-01
Chr05	irgsp1_rep	five_prime_UTR	20750016	20750027	.	+	.	Parent=Os05t0423200-01
Chr05	irgsp1_rep	CDS	20750028	20750765	.	+	0	Parent=Os05t0423200-01
Chr05	irgsp1_rep	CDS	20750849	20751080	.	+	0	Parent=Os05t0423200-01
Chr05	irgsp1_rep	CDS	20751658	20751737	.	+	2	Parent=Os05t0423200-01
Chr05	irgsp1_rep	CDS	20752227	20752352	.	+	0	Parent=Os05t0423200-01
Chr05	irgsp1_rep	three_prime_UTR	20752353	20752589	.	+	.	Parent=Os05t0423200-01
Chr05	irgsp1_rep	mRNA	20759526	20761828	.	+	.	ID=Os05t0423400-01;Name=Os05t0423400-01;Locus_id=Os05g0423400;CGSNL Gene Symbol=MADS4;CGSNL Gene Name=MADS BOX GENE 4;Oryzabase Gene Symbol Synonym(s)=OsMADS4%2C PI1%2C DLN140%2C OsDLN140;Oryzabase Gene Name Synonym(s)=MADS box gene4%2C MADS-box transcription factor 4%2C GLOBOSA(GLO)-like MADS-box gene-4%2C DLN repressor 140%2C DLN motif protein 140;Note=Similar to PISTILLATA-like MADS box protein.;Transcript_evidence=AK100233 (DDBJ%2C Best hit);ORF_evidence=Q40703 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box (IPR002100),Transcription factor%2C K-box (IPR002487);NIAS_FLcDNA=J023051B10;Oryzabase=3076;Expression=AK100233;TENOR=Os05t0423400-01;KEGG=Os05t0423400-01
Chr05	irgsp1_rep	five_prime_UTR	20759526	20759607	.	+	.	Parent=Os05t0423400-01
Chr05	irgsp1_rep	CDS	20759608	20759810	.	+	0	Parent=Os05t0423400-01
Chr05	irgsp1_rep	CDS	20759947	20760013	.	+	1	Parent=Os05t0423400-01
Chr05	irgsp1_rep	CDS	20760110	20760168	.	+	0	Parent=Os05t0423400-01
Chr05	irgsp1_rep	CDS	20760335	20760437	.	+	1	Parent=Os05t0423400-01
Chr05	irgsp1_rep	CDS	20760565	20760594	.	+	0	Parent=Os05t0423400-01
Chr05	irgsp1_rep	CDS	20760707	20760751	.	+	0	Parent=Os05t0423400-01
Chr05	irgsp1_rep	CDS	20761392	20761532	.	+	0	Parent=Os05t0423400-01
Chr05	irgsp1_rep	three_prime_UTR	20761533	20761828	.	+	.	Parent=Os05t0423400-01
Chr05	irgsp1_rep	mRNA	20761951	20764112	.	-	.	ID=Os05t0423500-01;Name=Os05t0423500-01;Locus_id=Os05g0423500;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK066000 (DDBJ%2C Best hit);ORF_evidence=NP_001148107.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J013049L02;Expression=AK066000;TENOR=Os05t0423500-01;KEGG=Os05t0423500-01
Chr05	irgsp1_rep	five_prime_UTR	20764046	20764112	.	-	.	Parent=Os05t0423500-01
Chr05	irgsp1_rep	CDS	20762111	20764045	.	-	0	Parent=Os05t0423500-01
Chr05	irgsp1_rep	three_prime_UTR	20761951	20762110	.	-	.	Parent=Os05t0423500-01
Chr05	irgsp1_rep	mRNA	20768269	20769580	.	-	.	ID=Os05t0423701-01;Name=Os05t0423701-01;Locus_id=Os05g0423701;Note=Similar to Endoglucanase 3.;Transcript_evidence=AK243325 (DDBJ%2C Best hit);ORF_evidence=Q8LQ92 (UniProt);NIAS_FLcDNA=J100057H19;TENOR=Os05t0423701-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	20769448	20769580	.	-	.	Parent=Os05t0423701-01
Chr05	irgsp1_rep	CDS	20768935	20769447	.	-	0	Parent=Os05t0423701-01
Chr05	irgsp1_rep	three_prime_UTR	20768269	20768934	.	-	.	Parent=Os05t0423701-01
Chr05	irgsp1_rep	mRNA	20779075	20781283	.	+	.	ID=Os05t0424000-01;Name=Os05t0424000-01;Locus_id=Os05g0424000;RAP-DB Gene Symbol Synonym(s)=OsAAP11F%2C AAP11F%2C OsAAP7%2C AAP7;RAP-DB Gene Name Synonym(s)=amino acid permease 11F%2C amino acid permease 7%2C amino acid/auxin permease 7;CGSNL Gene Symbol=AAP11F;CGSNL Gene Name=AMINO ACID PERMEASE 11F;Oryzabase Gene Symbol Synonym(s)=OsAAP11F%2C OsAAP7%2C AAP7%2C FCO7;Oryzabase Gene Name Synonym(s)=amino acid permease 11F%2C amino acid permease 7%2C amino acid/auxin permeate 7%2C Functioning in Cesium Over-transport 7;Note=Amino acid permease%2C Transport of amino acids;Transcript_evidence=AK065891;ORF_evidence=Q60EP1;InterPro=Amino acid transporter%2C transmembrane domain (IPR013057);NIAS_FLcDNA=J013044D15;Manual Curation=September 3%2C 2015;Literature_PMID=25907566,23166615;Oryzabase=18491;Expression=AK065891;TENOR=Os05t0424000-01;KEGG=Os05t0424000-01
Chr05	irgsp1_rep	five_prime_UTR	20779075	20779182	.	+	.	Parent=Os05t0424000-01
Chr05	irgsp1_rep	CDS	20779183	20779312	.	+	0	Parent=Os05t0424000-01
Chr05	irgsp1_rep	CDS	20779394	20779627	.	+	2	Parent=Os05t0424000-01
Chr05	irgsp1_rep	CDS	20779704	20779797	.	+	2	Parent=Os05t0424000-01
Chr05	irgsp1_rep	CDS	20779881	20780913	.	+	1	Parent=Os05t0424000-01
Chr05	irgsp1_rep	three_prime_UTR	20780914	20781283	.	+	.	Parent=Os05t0424000-01
Chr05	irgsp1_rep	mRNA	20779393	20780898	.	-	.	ID=Os05t0424100-00;Name=Os05t0424100-00;Locus_id=Os05g0424100;Note=Hypothetical protein.;Transcript_evidence=tplb0036o08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0424100-00
Chr05	irgsp1_rep	CDS	20780527	20780898	.	-	0	Parent=Os05t0424100-00
Chr05	irgsp1_rep	three_prime_UTR	20779879	20780526	.	-	.	Parent=Os05t0424100-00
Chr05	irgsp1_rep	three_prime_UTR	20779702	20779795	.	-	.	Parent=Os05t0424100-00
Chr05	irgsp1_rep	three_prime_UTR	20779393	20779623	.	-	.	Parent=Os05t0424100-00
Chr05	irgsp1_rep	mRNA	20792533	20794252	.	-	.	ID=Os05t0424300-01;Name=Os05t0424300-01;Locus_id=Os05g0424300;Note=CytoChrome P450 family protein.;Transcript_evidence=AK120987 (DDBJ%2C Best hit);ORF_evidence=A2Y4U9 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J023042L02;Expression=AK120987;TENOR=Os05t0424300-01;KEGG=Os05t0424300-01
Chr05	irgsp1_rep	five_prime_UTR	20794189	20794252	.	-	.	Parent=Os05t0424300-01
Chr05	irgsp1_rep	CDS	20792629	20794188	.	-	0	Parent=Os05t0424300-01
Chr05	irgsp1_rep	three_prime_UTR	20792533	20792628	.	-	.	Parent=Os05t0424300-01
Chr05	irgsp1_rep	mRNA	20804018	20804890	.	+	.	ID=Os05t0424700-01;Name=Os05t0424700-01;Locus_id=Os05g0424700;RAP-DB Gene Symbol Synonym(s)=COPT5;RAP-DB Gene Name Synonym(s)=copper transporter 5;CGSNL Gene Symbol=COPT5;CGSNL Gene Name=COPPER TRANSPORTER 5;Oryzabase Gene Symbol Synonym(s)=COPT5%2C OsCOPT5;Oryzabase Gene Name Synonym(s)=copper transporter 5;Note=High-affinity copper transport protein%2C Modulation of copper redistribution;Transcript_evidence=AK107848;ORF_evidence=Q60EN8;GO=Biological Process: copper ion transmembrane transport (GO:0035434),Molecular Function: copper ion transmembrane transporter activity (GO:0005375),Cellular Component: integral component of membrane (GO:0016021);InterPro=Ctr copper transporter (IPR007274);NIAS_FLcDNA=002-134-A06;Manual Curation=April 3%2C 2020;Literature_PMID=20852017;Oryzabase=12123;Expression=AK107848;TENOR=Os05t0424700-01;KEGG=Os05t0424700-01;Subcellular location=plasma membrane (GO:0005886)
Chr05	irgsp1_rep	five_prime_UTR	20804018	20804091	.	+	.	Parent=Os05t0424700-01
Chr05	irgsp1_rep	CDS	20804092	20804547	.	+	0	Parent=Os05t0424700-01
Chr05	irgsp1_rep	three_prime_UTR	20804548	20804890	.	+	.	Parent=Os05t0424700-01
Chr05	irgsp1_rep	mRNA	20807123	20811218	.	-	.	ID=Os05t0424800-01;Name=Os05t0424800-01;Locus_id=Os05g0424800;Note=Similar to AER274Wp.;Transcript_evidence=AK121054 (DDBJ%2C Best hit);ORF_evidence=NP_564447.1 (RefSeq);InterPro=Protein of unknown function DUF803 (IPR008521);NIAS_FLcDNA=J023055P22;TENOR=Os05t0424800-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	20810691	20811218	.	-	.	Parent=Os05t0424800-01
Chr05	irgsp1_rep	CDS	20810534	20810690	.	-	0	Parent=Os05t0424800-01
Chr05	irgsp1_rep	CDS	20809706	20809762	.	-	2	Parent=Os05t0424800-01
Chr05	irgsp1_rep	CDS	20809523	20809613	.	-	2	Parent=Os05t0424800-01
Chr05	irgsp1_rep	CDS	20809242	20809402	.	-	1	Parent=Os05t0424800-01
Chr05	irgsp1_rep	CDS	20809005	20809132	.	-	2	Parent=Os05t0424800-01
Chr05	irgsp1_rep	CDS	20808766	20808903	.	-	0	Parent=Os05t0424800-01
Chr05	irgsp1_rep	CDS	20808521	20808613	.	-	0	Parent=Os05t0424800-01
Chr05	irgsp1_rep	CDS	20807713	20807818	.	-	0	Parent=Os05t0424800-01
Chr05	irgsp1_rep	CDS	20807489	20807634	.	-	2	Parent=Os05t0424800-01
Chr05	irgsp1_rep	three_prime_UTR	20807123	20807488	.	-	.	Parent=Os05t0424800-01
Chr05	irgsp1_rep	mRNA	20815469	20820780	.	-	.	ID=Os05t0425000-00;Name=Os05t0425000-00;Locus_id=Os05g0425000;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001174431.1 (RefSeq);InterPro=Domain of unknown function DUF632 (IPR006867),Domain of unknown function DUF630 (IPR006868);TENOR=Os05t0425000-00;KEGG=Os05t0425000-00
Chr05	irgsp1_rep	CDS	20819415	20820780	.	-	0	Parent=Os05t0425000-00
Chr05	irgsp1_rep	CDS	20818872	20819137	.	-	2	Parent=Os05t0425000-00
Chr05	irgsp1_rep	CDS	20818334	20818566	.	-	0	Parent=Os05t0425000-00
Chr05	irgsp1_rep	CDS	20817055	20817796	.	-	1	Parent=Os05t0425000-00
Chr05	irgsp1_rep	CDS	20815469	20815519	.	-	0	Parent=Os05t0425000-00
Chr05	irgsp1_rep	mRNA	20828780	20829128	.	+	.	ID=Os05t0425301-00;Name=Os05t0425301-00;Locus_id=Os05g0425301;Note=Non-protein coding transcript.;Transcript_evidence=CT837785 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os05t0425301-00
Chr05	irgsp1_rep	exon	20828780	20829128	.	+	.	Parent=Os05t0425301-00
Chr05	irgsp1_rep	mRNA	20844456	20847089	.	+	.	ID=Os05t0425600-01;Name=Os05t0425600-01;Locus_id=Os05g0425600;Note=Hypothetical protein.;Transcript_evidence=AK064435 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-110-D07;Expression=AK064435;TENOR=Os05t0425600-01;KEGG=Os05t0425600-01
Chr05	irgsp1_rep	five_prime_UTR	20844456	20844556	.	+	.	Parent=Os05t0425600-01
Chr05	irgsp1_rep	CDS	20844557	20844868	.	+	0	Parent=Os05t0425600-01
Chr05	irgsp1_rep	three_prime_UTR	20844869	20845049	.	+	.	Parent=Os05t0425600-01
Chr05	irgsp1_rep	three_prime_UTR	20845207	20845559	.	+	.	Parent=Os05t0425600-01
Chr05	irgsp1_rep	three_prime_UTR	20846587	20847089	.	+	.	Parent=Os05t0425600-01
Chr05	irgsp1_rep	mRNA	20845763	20846492	.	+	.	ID=Os05t0425650-00;Name=Os05t0425650-00;Locus_id=Os05g0425650;Note=Conserved hypothetical protein.;Transcript_evidence=EU954473 (DDBJ);ORF_evidence=B8BJI3 (UniProt);TENOR=Os05t0425650-00
Chr05	irgsp1_rep	five_prime_UTR	20845763	20845817	.	+	.	Parent=Os05t0425650-00
Chr05	irgsp1_rep	CDS	20845818	20846492	.	+	0	Parent=Os05t0425650-00
Chr05	irgsp1_rep	mRNA	20847174	20851077	.	+	.	ID=Os05t0425700-01;Name=Os05t0425700-01;Locus_id=Os05g0425700;Oryzabase Gene Symbol Synonym(s)=OsFbox258%2C Os_F0658;Oryzabase Gene Name Synonym(s)=F-box protein 258;Note=Similar to F-box protein AtFBL5.;Transcript_evidence=AK101519 (DDBJ%2C Best hit);ORF_evidence=NP_001142195.1 (RefSeq);InterPro=Leucine-rich repeat%2C cysteine-containing subtype (IPR006553);NIAS_FLcDNA=J033046J24;Oryzabase=17042;Expression=AK101519;TENOR=Os05t0425700-01;KEGG=Os05t0425700-01
Chr05	irgsp1_rep	five_prime_UTR	20847174	20847513	.	+	.	Parent=Os05t0425700-01
Chr05	irgsp1_rep	five_prime_UTR	20848470	20848500	.	+	.	Parent=Os05t0425700-01
Chr05	irgsp1_rep	CDS	20848501	20848760	.	+	0	Parent=Os05t0425700-01
Chr05	irgsp1_rep	CDS	20849504	20849852	.	+	1	Parent=Os05t0425700-01
Chr05	irgsp1_rep	CDS	20849927	20850068	.	+	0	Parent=Os05t0425700-01
Chr05	irgsp1_rep	CDS	20850361	20850740	.	+	2	Parent=Os05t0425700-01
Chr05	irgsp1_rep	three_prime_UTR	20850741	20851077	.	+	.	Parent=Os05t0425700-01
Chr05	irgsp1_rep	mRNA	20847243	20851009	.	+	.	ID=Os05t0425700-02;Name=Os05t0425700-02;Locus_id=Os05g0425700;Oryzabase Gene Symbol Synonym(s)=OsFbox258%2C Os_F0658;Oryzabase Gene Name Synonym(s)=F-box protein 258;Note=Similar to F-box protein AtFBL5.;Transcript_evidence=AK066897 (DDBJ%2C Best hit);ORF_evidence=NP_001142195.1 (RefSeq);InterPro=Leucine-rich repeat%2C cysteine-containing subtype (IPR006553);NIAS_FLcDNA=J013091C24;Oryzabase=17042;Expression=AK066897;TENOR=Os05t0425700-02;KEGG=Os05t0425700-02
Chr05	irgsp1_rep	five_prime_UTR	20847243	20847513	.	+	.	Parent=Os05t0425700-02
Chr05	irgsp1_rep	five_prime_UTR	20848470	20848500	.	+	.	Parent=Os05t0425700-02
Chr05	irgsp1_rep	CDS	20848501	20848760	.	+	0	Parent=Os05t0425700-02
Chr05	irgsp1_rep	CDS	20849504	20849852	.	+	1	Parent=Os05t0425700-02
Chr05	irgsp1_rep	CDS	20849927	20850068	.	+	0	Parent=Os05t0425700-02
Chr05	irgsp1_rep	CDS	20850361	20850740	.	+	2	Parent=Os05t0425700-02
Chr05	irgsp1_rep	three_prime_UTR	20850741	20851009	.	+	.	Parent=Os05t0425700-02
Chr05	irgsp1_rep	mRNA	20870125	20873731	.	+	.	ID=Os05t0426000-01;Name=Os05t0426000-01;Locus_id=Os05g0426000;CGSNL Gene Symbol=SWEET1B;CGSNL Gene Name=SWEET1B;Oryzabase Gene Symbol Synonym(s)=OsSWEET1b%2C SWEET1b;Note=MtN3 and saliva related transmembrane protein family protein.;Transcript_evidence=AK063475 (DDBJ%2C Best hit);ORF_evidence=Q60EC2 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=RAG1-activating protein-1-related (IPR004316);NIAS_FLcDNA=001-116-B01;Oryzabase=9089;Expression=AK063475;TENOR=Os05t0426000-01;KEGG=Os05t0426000-01
Chr05	irgsp1_rep	five_prime_UTR	20870125	20870348	.	+	.	Parent=Os05t0426000-01
Chr05	irgsp1_rep	CDS	20870349	20870385	.	+	0	Parent=Os05t0426000-01
Chr05	irgsp1_rep	CDS	20870512	20870548	.	+	2	Parent=Os05t0426000-01
Chr05	irgsp1_rep	CDS	20871199	20871294	.	+	1	Parent=Os05t0426000-01
Chr05	irgsp1_rep	CDS	20872589	20872871	.	+	1	Parent=Os05t0426000-01
Chr05	irgsp1_rep	CDS	20873108	20873227	.	+	0	Parent=Os05t0426000-01
Chr05	irgsp1_rep	CDS	20873318	20873530	.	+	0	Parent=Os05t0426000-01
Chr05	irgsp1_rep	three_prime_UTR	20873531	20873731	.	+	.	Parent=Os05t0426000-01
Chr05	irgsp1_rep	mRNA	20873834	20875589	.	-	.	ID=Os05t0426033-01;Name=Os05t0426033-01;Locus_id=Os05g0426033;Note=Hypothetical conserved gene.;Transcript_evidence=AK242132 (DDBJ%2C Best hit);ORF_evidence=B9FPP9 (UniProt);NIAS_FLcDNA=J075149D21;TENOR=Os05t0426033-01;KEGG=Os05t0426033-01
Chr05	irgsp1_rep	five_prime_UTR	20875386	20875589	.	-	.	Parent=Os05t0426033-01
Chr05	irgsp1_rep	CDS	20875289	20875385	.	-	0	Parent=Os05t0426033-01
Chr05	irgsp1_rep	CDS	20874981	20875099	.	-	2	Parent=Os05t0426033-01
Chr05	irgsp1_rep	three_prime_UTR	20874189	20874980	.	-	.	Parent=Os05t0426033-01
Chr05	irgsp1_rep	three_prime_UTR	20873834	20874092	.	-	.	Parent=Os05t0426033-01
Chr05	irgsp1_rep	mRNA	20876583	20876834	.	-	.	ID=Os05t0426066-00;Name=Os05t0426066-00;Locus_id=Os05g0426066;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6EU86 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);TENOR=Os05t0426066-00;KEGG=Os05t0426066-00
Chr05	irgsp1_rep	CDS	20876583	20876834	.	-	0	Parent=Os05t0426066-00
Chr05	irgsp1_rep	mRNA	20877789	20879887	.	+	.	ID=Os05t0426100-00;Name=Os05t0426100-00;Locus_id=Os05g0426100;Note=Similar to predicted protein.;Transcript_evidence=BT060725 (DDBJ);ORF_evidence=NP_001174432.1 (RefSeq);GO=Biological Process: clathrin coat assembly (GO:0048268),Cellular Component: clathrin coat (GO:0030118),Molecular Function: phospholipid binding (GO:0005543),Molecular Function: 1-phosphatidylinositol binding (GO:0005545),Molecular Function: clathrin binding (GO:0030276);InterPro=ENTH/VHS (IPR008942),ANTH (IPR011417),Epsin-like%2C N-terminal (IPR013809),Clathrin adaptor%2C phosphoinositide-binding%2C GAT-like (IPR014712);TENOR=Os05t0426100-00;KEGG=Os05t0426100-00
Chr05	irgsp1_rep	CDS	20877789	20878686	.	+	0	Parent=Os05t0426100-00
Chr05	irgsp1_rep	CDS	20878769	20879871	.	+	2	Parent=Os05t0426100-00
Chr05	irgsp1_rep	three_prime_UTR	20879872	20879887	.	+	.	Parent=Os05t0426100-00
Chr05	irgsp1_rep	mRNA	20877976	20879794	.	-	.	ID=Os05t0426150-00;Name=Os05t0426150-00;Locus_id=Os05g0426150;Note=Hypothetical protein.;Transcript_evidence=AK356307 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0426150-00
Chr05	irgsp1_rep	five_prime_UTR	20879704	20879794	.	-	.	Parent=Os05t0426150-00
Chr05	irgsp1_rep	CDS	20878666	20879703	.	-	0	Parent=Os05t0426150-00
Chr05	irgsp1_rep	three_prime_UTR	20877976	20878665	.	-	.	Parent=Os05t0426150-00
Chr05	irgsp1_rep	mRNA	20880323	20884441	.	-	.	ID=Os05t0426200-02;Name=Os05t0426200-02;Locus_id=Os05g0426200;CGSNL Gene Symbol=NAC36;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 36;Oryzabase Gene Symbol Synonym(s)=ONAC036%2C ONAC36%2C ONAC038%2C ONAC38%2C IDEF2%2C OsIDEF2;Oryzabase Gene Name Synonym(s)=IDE-binding factor 2%2C NAC domain-containing protein 36%2C NAC domain-containing protein 38%2C iron deficiency-responsive cis-acting element binding factor 2;Note=No apical meristem (NAM) protein domain containing protein.;Transcript_evidence=AK099540 (DDBJ%2C Best hit),AK065065 (DDBJ%2C Best hit);ORF_evidence=B2NIC5 (UniProt);NIAS_FLcDNA=J013032G17,J013001J20;Oryzabase=8972;Expression=AK099540;TENOR=Os05t0426200-02;KEGG=Os05t0426200-02
Chr05	irgsp1_rep	five_prime_UTR	20884318	20884441	.	-	.	Parent=Os05t0426200-02
Chr05	irgsp1_rep	five_prime_UTR	20882979	20883611	.	-	.	Parent=Os05t0426200-02
Chr05	irgsp1_rep	CDS	20882822	20882978	.	-	0	Parent=Os05t0426200-02
Chr05	irgsp1_rep	CDS	20882391	20882668	.	-	2	Parent=Os05t0426200-02
Chr05	irgsp1_rep	CDS	20881394	20881885	.	-	0	Parent=Os05t0426200-02
Chr05	irgsp1_rep	CDS	20880861	20881283	.	-	0	Parent=Os05t0426200-02
Chr05	irgsp1_rep	three_prime_UTR	20880838	20880860	.	-	.	Parent=Os05t0426200-02
Chr05	irgsp1_rep	three_prime_UTR	20880323	20880756	.	-	.	Parent=Os05t0426200-02
Chr05	irgsp1_rep	mRNA	20894101	20897851	.	+	.	ID=Os05t0426300-01;Name=Os05t0426300-01;Locus_id=Os05g0426300;Oryzabase Gene Symbol Synonym(s)=OsTBL27%2C TBL27;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 27;Note=Protein of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=AK099814 (DDBJ%2C Best hit);ORF_evidence=B8AYH4 (UniProt);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=J013099L01;Oryzabase=21482;Expression=AK099814;TENOR=Os05t0426300-01;KEGG=Os05t0426300-01
Chr05	irgsp1_rep	five_prime_UTR	20894101	20894415	.	+	.	Parent=Os05t0426300-01
Chr05	irgsp1_rep	CDS	20894416	20895257	.	+	0	Parent=Os05t0426300-01
Chr05	irgsp1_rep	CDS	20895953	20896111	.	+	1	Parent=Os05t0426300-01
Chr05	irgsp1_rep	CDS	20897140	20897417	.	+	1	Parent=Os05t0426300-01
Chr05	irgsp1_rep	CDS	20897533	20897555	.	+	2	Parent=Os05t0426300-01
Chr05	irgsp1_rep	three_prime_UTR	20897556	20897851	.	+	.	Parent=Os05t0426300-01
Chr05	irgsp1_rep	mRNA	20895258	20897832	.	+	.	ID=Os05t0426300-02;Name=Os05t0426300-02;Locus_id=Os05g0426300;Oryzabase Gene Symbol Synonym(s)=OsTBL27%2C TBL27;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 27;Note=Domain of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=AK100779 (DDBJ%2C Best hit);ORF_evidence=XP_002439830.1 (RefSeq);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=J023120F24;Oryzabase=21482;TENOR=Os05t0426300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	20895258	20897107	.	+	.	Parent=Os05t0426300-02
Chr05	irgsp1_rep	CDS	20897108	20897428	.	+	0	Parent=Os05t0426300-02
Chr05	irgsp1_rep	three_prime_UTR	20897429	20897832	.	+	.	Parent=Os05t0426300-02
Chr05	irgsp1_rep	mRNA	20898381	20900873	.	+	.	ID=Os05t0426350-00;Name=Os05t0426350-00;Locus_id=Os05g0426350;Note=Hypothetical protein.;Transcript_evidence=tplb0041a22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0426350-00
Chr05	irgsp1_rep	five_prime_UTR	20898381	20898880	.	+	.	Parent=Os05t0426350-00
Chr05	irgsp1_rep	CDS	20898881	20899195	.	+	0	Parent=Os05t0426350-00
Chr05	irgsp1_rep	three_prime_UTR	20899196	20899627	.	+	.	Parent=Os05t0426350-00
Chr05	irgsp1_rep	three_prime_UTR	20899920	20900581	.	+	.	Parent=Os05t0426350-00
Chr05	irgsp1_rep	three_prime_UTR	20900683	20900873	.	+	.	Parent=Os05t0426350-00
Chr05	irgsp1_rep	mRNA	20898523	20903638	.	-	.	ID=Os05t0426400-01;Name=Os05t0426400-01;Locus_id=Os05g0426400;Note=Glycosyl transferase%2C family 8 domain containing protein.;Transcript_evidence=AK064877 (DDBJ%2C Best hit);ORF_evidence=XP_002278157.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 8 (IPR002495);NIAS_FLcDNA=J013000J17;TENOR=Os05t0426400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	20903350	20903638	.	-	.	Parent=Os05t0426400-01
Chr05	irgsp1_rep	five_prime_UTR	20902648	20902819	.	-	.	Parent=Os05t0426400-01
Chr05	irgsp1_rep	five_prime_UTR	20900679	20900873	.	-	.	Parent=Os05t0426400-01
Chr05	irgsp1_rep	five_prime_UTR	20900003	20900566	.	-	.	Parent=Os05t0426400-01
Chr05	irgsp1_rep	CDS	20899929	20900002	.	-	0	Parent=Os05t0426400-01
Chr05	irgsp1_rep	CDS	20898632	20899634	.	-	1	Parent=Os05t0426400-01
Chr05	irgsp1_rep	three_prime_UTR	20898523	20898631	.	-	.	Parent=Os05t0426400-01
Chr05	irgsp1_rep	mRNA	20898521	20899197	.	-	.	ID=Os05t0426400-02;Name=Os05t0426400-02;Locus_id=Os05g0426400;Note=Similar to cDNA clone:J013112C08%2C full insert sequence.;Transcript_evidence=AK061637 (DDBJ%2C Best hit);ORF_evidence=B7EDL1 (UniProt);NIAS_FLcDNA=001-036-A11;Expression=AK061637;TENOR=Os05t0426400-02;KEGG=Os05t0426400-02
Chr05	irgsp1_rep	five_prime_UTR	20899196	20899197	.	-	.	Parent=Os05t0426400-02
Chr05	irgsp1_rep	CDS	20898632	20899195	.	-	0	Parent=Os05t0426400-02
Chr05	irgsp1_rep	three_prime_UTR	20898521	20898631	.	-	.	Parent=Os05t0426400-02
Chr05	irgsp1_rep	mRNA	20932275	20934024	.	+	.	ID=Os05t0426800-00;Name=Os05t0426800-00;Locus_id=Os05g0426800;Note=Hypothetical conserved gene.;Transcript_evidence=BT062090 (DDBJ);ORF_evidence=NP_001055603.1 (RefSeq);TENOR=Os05t0426800-00;KEGG=Os05t0426800-00
Chr05	irgsp1_rep	five_prime_UTR	20932275	20932531	.	+	.	Parent=Os05t0426800-00
Chr05	irgsp1_rep	CDS	20932532	20932951	.	+	0	Parent=Os05t0426800-00
Chr05	irgsp1_rep	CDS	20933878	20934024	.	+	0	Parent=Os05t0426800-00
Chr05	irgsp1_rep	mRNA	20936237	20937064	.	+	.	ID=Os05t0426900-01;Name=Os05t0426900-01;Locus_id=Os05g0426900;Note=Conserved hypothetical protein.;Transcript_evidence=AK073384 (DDBJ%2C Best hit);ORF_evidence=A2Y4W2 (UniProt);NIAS_FLcDNA=J033030B15;Expression=AK073384;TENOR=Os05t0426900-01;KEGG=Os05t0426900-01
Chr05	irgsp1_rep	five_prime_UTR	20936237	20936335	.	+	.	Parent=Os05t0426900-01
Chr05	irgsp1_rep	CDS	20936336	20936908	.	+	0	Parent=Os05t0426900-01
Chr05	irgsp1_rep	three_prime_UTR	20936909	20937064	.	+	.	Parent=Os05t0426900-01
Chr05	irgsp1_rep	mRNA	20939553	20942190	.	+	.	ID=Os05t0427100-01;Name=Os05t0427100-01;Locus_id=Os05g0427100;Note=Octicosapeptide/Phox/Bem1p domain containing protein.;Transcript_evidence=AK120642 (DDBJ%2C Best hit);ORF_evidence=B6TWP6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Phox/Bem1p (IPR000270);NIAS_FLcDNA=J013154O20;Expression=AK120642;TENOR=Os05t0427100-01;KEGG=Os05t0427100-01
Chr05	irgsp1_rep	five_prime_UTR	20939553	20939995	.	+	.	Parent=Os05t0427100-01
Chr05	irgsp1_rep	five_prime_UTR	20940095	20940159	.	+	.	Parent=Os05t0427100-01
Chr05	irgsp1_rep	five_prime_UTR	20940764	20940812	.	+	.	Parent=Os05t0427100-01
Chr05	irgsp1_rep	CDS	20940813	20941056	.	+	0	Parent=Os05t0427100-01
Chr05	irgsp1_rep	CDS	20941140	20941996	.	+	2	Parent=Os05t0427100-01
Chr05	irgsp1_rep	three_prime_UTR	20941997	20942190	.	+	.	Parent=Os05t0427100-01
Chr05	irgsp1_rep	mRNA	20939683	20942190	.	+	.	ID=Os05t0427100-02;Name=Os05t0427100-02;Locus_id=Os05g0427100;Note=Octicosapeptide/Phox/Bem1p domain containing protein.;Transcript_evidence=AK105306 (DDBJ%2C Best hit);ORF_evidence=B6TWP6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Phox/Bem1p (IPR000270);NIAS_FLcDNA=001-117-A12;Expression=AK105306;TENOR=Os05t0427100-02;KEGG=Os05t0427100-02
Chr05	irgsp1_rep	five_prime_UTR	20939683	20939995	.	+	.	Parent=Os05t0427100-02
Chr05	irgsp1_rep	five_prime_UTR	20940095	20940159	.	+	.	Parent=Os05t0427100-02
Chr05	irgsp1_rep	five_prime_UTR	20940764	20940812	.	+	.	Parent=Os05t0427100-02
Chr05	irgsp1_rep	CDS	20940813	20941056	.	+	0	Parent=Os05t0427100-02
Chr05	irgsp1_rep	CDS	20941140	20941996	.	+	2	Parent=Os05t0427100-02
Chr05	irgsp1_rep	three_prime_UTR	20941997	20942190	.	+	.	Parent=Os05t0427100-02
Chr05	irgsp1_rep	mRNA	20944820	20947148	.	-	.	ID=Os05t0427200-01;Name=Os05t0427200-01;Locus_id=Os05g0427200;Note=Similar to Beta-1%2C3-galactosyltransferase sqv-2.;Transcript_evidence=AK106896 (DDBJ%2C Best hit);ORF_evidence=B6TIX7 (UniProt);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Glycosyl transferase%2C family 31 (IPR002659);NIAS_FLcDNA=002-118-H01;TENOR=Os05t0427200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	20947083	20947148	.	-	.	Parent=Os05t0427200-01
Chr05	irgsp1_rep	CDS	20947050	20947082	.	-	0	Parent=Os05t0427200-01
Chr05	irgsp1_rep	CDS	20946733	20946957	.	-	0	Parent=Os05t0427200-01
Chr05	irgsp1_rep	CDS	20946576	20946640	.	-	0	Parent=Os05t0427200-01
Chr05	irgsp1_rep	CDS	20946054	20946505	.	-	1	Parent=Os05t0427200-01
Chr05	irgsp1_rep	CDS	20945889	20945976	.	-	2	Parent=Os05t0427200-01
Chr05	irgsp1_rep	CDS	20945659	20945784	.	-	1	Parent=Os05t0427200-01
Chr05	irgsp1_rep	CDS	20945282	20945555	.	-	1	Parent=Os05t0427200-01
Chr05	irgsp1_rep	three_prime_UTR	20944820	20945281	.	-	.	Parent=Os05t0427200-01
Chr05	irgsp1_rep	mRNA	20945128	20946958	.	-	.	ID=Os05t0427200-02;Name=Os05t0427200-02;Locus_id=Os05g0427200;Note=Similar to beta-1%2C3-galactosyltransferase sqv-2.;Transcript_evidence=AK070830 (DDBJ%2C Best hit);ORF_evidence=B6TIX7 (UniProt);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Glycosyl transferase%2C family 31 (IPR002659);NIAS_FLcDNA=J023065E21;Expression=AK070830;TENOR=Os05t0427200-02;KEGG=Os05t0427200-02
Chr05	irgsp1_rep	five_prime_UTR	20946958	20946958	.	-	.	Parent=Os05t0427200-02
Chr05	irgsp1_rep	CDS	20946733	20946957	.	-	0	Parent=Os05t0427200-02
Chr05	irgsp1_rep	CDS	20946576	20946640	.	-	0	Parent=Os05t0427200-02
Chr05	irgsp1_rep	CDS	20946054	20946505	.	-	1	Parent=Os05t0427200-02
Chr05	irgsp1_rep	CDS	20945889	20945976	.	-	2	Parent=Os05t0427200-02
Chr05	irgsp1_rep	CDS	20945659	20945784	.	-	1	Parent=Os05t0427200-02
Chr05	irgsp1_rep	CDS	20945282	20945555	.	-	1	Parent=Os05t0427200-02
Chr05	irgsp1_rep	three_prime_UTR	20945128	20945281	.	-	.	Parent=Os05t0427200-02
Chr05	irgsp1_rep	mRNA	20947600	20951327	.	-	.	ID=Os05t0427300-03;Name=Os05t0427300-03;Locus_id=Os05g0427300;Note=Similar to RNA binding protein (Fragment).;Transcript_evidence=AK120426 (DDBJ%2C Best hit),AK060130 (DDBJ%2C Best hit),AK061869 (DDBJ%2C Best hit),AK073321 (DDBJ%2C Best hit),AK104745 (DDBJ%2C Best hit);ORF_evidence=B6TRN6 (UniProt);NIAS_FLcDNA=J013095G08,006-309-A11,001-041-A02,J033030I04,001-038-E05;Expression=AK120426;TENOR=Os05t0427300-03;KEGG=Os05t0427300-03
Chr05	irgsp1_rep	five_prime_UTR	20951141	20951327	.	-	.	Parent=Os05t0427300-03
Chr05	irgsp1_rep	CDS	20951107	20951140	.	-	0	Parent=Os05t0427300-03
Chr05	irgsp1_rep	CDS	20949341	20949552	.	-	2	Parent=Os05t0427300-03
Chr05	irgsp1_rep	CDS	20948938	20949124	.	-	0	Parent=Os05t0427300-03
Chr05	irgsp1_rep	CDS	20948723	20948853	.	-	2	Parent=Os05t0427300-03
Chr05	irgsp1_rep	three_prime_UTR	20947600	20948722	.	-	.	Parent=Os05t0427300-03
Chr05	irgsp1_rep	mRNA	20948228	20951325	.	-	.	ID=Os05t0427300-04;Name=Os05t0427300-04;Locus_id=Os05g0427300;Note=Similar to RNA recognition motif-containing protein.;Transcript_evidence=AK099731 (DDBJ%2C Best hit);ORF_evidence=B6TRN6 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013089N11;Expression=AK099731;TENOR=Os05t0427300-04;KEGG=Os05t0427300-04
Chr05	irgsp1_rep	five_prime_UTR	20951141	20951325	.	-	.	Parent=Os05t0427300-04
Chr05	irgsp1_rep	CDS	20951107	20951140	.	-	0	Parent=Os05t0427300-04
Chr05	irgsp1_rep	CDS	20949341	20949552	.	-	2	Parent=Os05t0427300-04
Chr05	irgsp1_rep	CDS	20948885	20949124	.	-	0	Parent=Os05t0427300-04
Chr05	irgsp1_rep	three_prime_UTR	20948228	20948884	.	-	.	Parent=Os05t0427300-04
Chr05	irgsp1_rep	mRNA	20953643	20955793	.	-	.	ID=Os05t0427400-00;Name=Os05t0427400-00;Locus_id=Os05g0427400;CGSNL Gene Name=PHENYLALANINE AMMONIA-LYASE;Oryzabase Gene Symbol Synonym(s)=OsPAL04%2C PAL04%2C PAL%2C OsPAL7%2C PAL7;Oryzabase Gene Name Synonym(s)=Phenylalanine ammonia lyase;Note=Similar to Phenylalanine ammonia-lyase.;Transcript_evidence=A2X7F7 (UniProt);ORF_evidence=A2Y4W6 (UniProt);GO=Biological Process: L-phenylalanine catabolic process (GO:0006559),Biological Process: biosynthetic process (GO:0009058),Cellular Component: cytoplasm (GO:0005737),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ammonia-lyase activity (GO:0016841);InterPro=Phenylalanine/histidine ammonia-lyase (IPR001106),Phenylalanine ammonia-lyase (IPR005922),L-Aspartase-like (IPR008948),Phenylalanine/histidine ammonia-lyases%2C active site (IPR022313),Phenylalanine ammonia-lyase%2C shielding domain (IPR023144),L-Aspartase-like%2C N-terminal (IPR024083);Oryzabase=671;TENOR=Os05t0427400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	20953643	20955793	.	-	0	Parent=Os05t0427400-00
Chr05	irgsp1_rep	mRNA	20973884	20974330	.	+	.	ID=Os05t0427800-00;Name=Os05t0427800-00;Locus_id=Os05g0427800;Note=Similar to Ribulose bisphosphate carboxylase large chain.;Transcript_evidence=ab initio prediction;ORF_evidence=Q37247 (UniProt);GO=Biological Process: carbon fixation (GO:0015977),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: ribulose-bisphosphate carboxylase activity (GO:0016984);InterPro=Ribulose bisphosphate carboxylase%2C large subunit%2C ferrodoxin-like N-terminal (IPR017443),Ribulose bisphosphate carboxylase%2C large subunit%2C N-terminal (IPR017444);TENOR=Os05t0427800-00
Chr05	irgsp1_rep	CDS	20973884	20974330	.	+	0	Parent=Os05t0427800-00
Chr05	irgsp1_rep	mRNA	20978542	20979912	.	-	.	ID=Os05t0427900-01;Name=Os05t0427900-01;Locus_id=Os05g0427900;Note=Similar to DnaJ-like protein.;Transcript_evidence=AK067448 (DDBJ%2C Best hit);ORF_evidence=E9P1K1 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Chaperone DnaJ%2C C-terminal (IPR002939),HSP40/DnaJ peptide-binding (IPR008971);NIAS_FLcDNA=J013107N09;TENOR=Os05t0427900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	20979762	20979912	.	-	.	Parent=Os05t0427900-01
Chr05	irgsp1_rep	CDS	20979754	20979761	.	-	0	Parent=Os05t0427900-01
Chr05	irgsp1_rep	CDS	20978756	20979224	.	-	1	Parent=Os05t0427900-01
Chr05	irgsp1_rep	three_prime_UTR	20978542	20978755	.	-	.	Parent=Os05t0427900-01
Chr05	irgsp1_rep	mRNA	20986065	20986277	.	-	.	ID=Os05t0428000-00;Name=Os05t0428000-00;Locus_id=Os05g0428000;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001055611.1 (RefSeq);TENOR=Os05t0428000-00;KEGG=Os05t0428000-00
Chr05	irgsp1_rep	CDS	20986065	20986277	.	-	0	Parent=Os05t0428000-00
Chr05	irgsp1_rep	mRNA	20989736	20998304	.	-	.	ID=Os05t0428100-00;Name=Os05t0428100-00;Locus_id=Os05g0428100;CGSNL Gene Symbol=BGAL6;CGSNL Gene Name=BETA-GALACTOSIDASE 6;Oryzabase Gene Symbol Synonym(s)=OsBgal6%2C OsBGal6;Oryzabase Gene Name Synonym(s)=Beta-galactosidase 7%2C Lactase 7;Note=Similar to Beta-galactosidase.;Transcript_evidence=EU602310 (DDBJ%2C Best hit);ORF_evidence=B9FPQ6 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: sugar binding (GO:0005529),Molecular Function: cation binding (GO:0043169);InterPro=D-galactoside/L-rhamnose binding SUEL lectin domain (IPR000922),Glycoside hydrolase%2C family 35 (IPR001944),Galactose-binding domain-like (IPR008979),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 35%2C conserved site (IPR019801);Oryzabase=8294;TENOR=Os05t0428100-00;KEGG=Os05t0428100-00
Chr05	irgsp1_rep	CDS	20998131	20998304	.	-	0	Parent=Os05t0428100-00
Chr05	irgsp1_rep	CDS	20993996	20994091	.	-	0	Parent=Os05t0428100-00
Chr05	irgsp1_rep	CDS	20993775	20993887	.	-	0	Parent=Os05t0428100-00
Chr05	irgsp1_rep	CDS	20993556	20993622	.	-	1	Parent=Os05t0428100-00
Chr05	irgsp1_rep	CDS	20993360	20993452	.	-	0	Parent=Os05t0428100-00
Chr05	irgsp1_rep	CDS	20993140	20993283	.	-	0	Parent=Os05t0428100-00
Chr05	irgsp1_rep	CDS	20992932	20993026	.	-	0	Parent=Os05t0428100-00
Chr05	irgsp1_rep	CDS	20992732	20992840	.	-	1	Parent=Os05t0428100-00
Chr05	irgsp1_rep	CDS	20992539	20992623	.	-	0	Parent=Os05t0428100-00
Chr05	irgsp1_rep	CDS	20992300	20992418	.	-	2	Parent=Os05t0428100-00
Chr05	irgsp1_rep	CDS	20992057	20992218	.	-	0	Parent=Os05t0428100-00
Chr05	irgsp1_rep	CDS	20991776	20991960	.	-	0	Parent=Os05t0428100-00
Chr05	irgsp1_rep	CDS	20991586	20991683	.	-	1	Parent=Os05t0428100-00
Chr05	irgsp1_rep	CDS	20991243	20991355	.	-	2	Parent=Os05t0428100-00
Chr05	irgsp1_rep	CDS	20990754	20990861	.	-	0	Parent=Os05t0428100-00
Chr05	irgsp1_rep	CDS	20990565	20990672	.	-	0	Parent=Os05t0428100-00
Chr05	irgsp1_rep	CDS	20990343	20990488	.	-	0	Parent=Os05t0428100-00
Chr05	irgsp1_rep	CDS	20989943	20990252	.	-	1	Parent=Os05t0428100-00
Chr05	irgsp1_rep	CDS	20989736	20989846	.	-	0	Parent=Os05t0428100-00
Chr05	irgsp1_rep	mRNA	21006679	21009677	.	-	.	ID=Os05t0428400-00;Name=Os05t0428400-00;Locus_id=Os05g0428400;Note=Rossmann-like alpha/beta/alpha sandwich fold domain containing protein.;Transcript_evidence=tplb0012c21 (Wheat FLcDNA);ORF_evidence=NP_001150820.1 (RefSeq);GO=Biological Process: response to stress (GO:0006950);InterPro=UspA (IPR006016),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);TENOR=Os05t0428400-00;KEGG=Os05t0428400-00
Chr05	irgsp1_rep	five_prime_UTR	21009579	21009677	.	-	.	Parent=Os05t0428400-00
Chr05	irgsp1_rep	CDS	21009168	21009578	.	-	0	Parent=Os05t0428400-00
Chr05	irgsp1_rep	CDS	21007950	21008068	.	-	0	Parent=Os05t0428400-00
Chr05	irgsp1_rep	CDS	21007034	21007181	.	-	1	Parent=Os05t0428400-00
Chr05	irgsp1_rep	three_prime_UTR	21006679	21007033	.	-	.	Parent=Os05t0428400-00
Chr05	irgsp1_rep	mRNA	21033769	21036041	.	-	.	ID=Os05t0428600-01;Name=Os05t0428600-01;Locus_id=Os05g0428600;Oryzabase Gene Symbol Synonym(s)=OsBiP4%2C BiP4%2C OsMed37_5%2C Med37_5%2C BiP2;Oryzabase Gene Name Synonym(s)=ER chaperone BiP4%2C Binding protein 4%2C Mediator 37_5;Note=Similar to HSP70 precursor.;Transcript_evidence=AK106696 (DDBJ%2C Best hit);ORF_evidence=Q03685 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Heat shock protein Hsp70 (IPR001023),Heat shock protein 70 (IPR013126),Heat shock protein 70%2C conserved site (IPR018181);NIAS_FLcDNA=002-114-D06;Oryzabase=10085;Expression=AK106696;TENOR=Os05t0428600-01;KEGG=Os05t0428600-01
Chr05	irgsp1_rep	five_prime_UTR	21036009	21036041	.	-	.	Parent=Os05t0428600-01
Chr05	irgsp1_rep	CDS	21033945	21036008	.	-	0	Parent=Os05t0428600-01
Chr05	irgsp1_rep	three_prime_UTR	21033769	21033944	.	-	.	Parent=Os05t0428600-01
Chr05	irgsp1_rep	mRNA	21039575	21044860	.	-	.	ID=Os05t0428700-01;Name=Os05t0428700-01;Locus_id=Os05g0428700;RAP-DB Gene Symbol Synonym(s)=OsAKT2%2C OsK3.1;Oryzabase Gene Symbol Synonym(s)=OsAKT2;Oryzabase Gene Name Synonym(s)=salt-sensitive K1 uptake channel OsAKT2;Note=Potassium channel%2C Shaker K<sup>+</sup> channel;Transcript_evidence=AK061594 (truncated),JN989970;ORF_evidence=Q75HP9;GO=Biological Process: ion transport (GO:0006811),Biological Process: potassium ion transport (GO:0006813),Biological Process: transmembrane transport (GO:0055085),Molecular Function: ion channel activity (GO:0005216),Molecular Function: voltage-gated potassium channel activity (GO:0005249),Molecular Function: protein binding (GO:0005515),Cellular Component: membrane (GO:0016020);InterPro=Cyclic nucleotide-binding-like (IPR018490),RmlC-like jelly roll fold (IPR014710),Ankyrin repeat-containing domain superfamily (IPR036770),Potassium channel%2C voltage-dependent%2C EAG/ELK/ERG (IPR003938),Ion transport domain (IPR005821),Cyclic nucleotide-binding domain (IPR000595),Ankyrin repeat-containing domain (IPR020683),KHA domain (IPR021789),Ankyrin repeat (IPR002110);NIAS_FLcDNA=001-023-E11 (truncated);Manual Curation=March 6%2C 2020;Literature_PMID=32128922;Oryzabase=10370;Expression=AK061594;TENOR=Os05t0428700-01;KEGG=Os05t0428700-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=plasma membrane (GO:0005886)
Chr05	irgsp1_rep	CDS	21044646	21044860	.	-	0	Parent=Os05t0428700-01
Chr05	irgsp1_rep	CDS	21044336	21044554	.	-	1	Parent=Os05t0428700-01
Chr05	irgsp1_rep	CDS	21043024	21043182	.	-	1	Parent=Os05t0428700-01
Chr05	irgsp1_rep	CDS	21042867	21042924	.	-	1	Parent=Os05t0428700-01
Chr05	irgsp1_rep	CDS	21042451	21042768	.	-	0	Parent=Os05t0428700-01
Chr05	irgsp1_rep	CDS	21042126	21042365	.	-	0	Parent=Os05t0428700-01
Chr05	irgsp1_rep	CDS	21041364	21041684	.	-	0	Parent=Os05t0428700-01
Chr05	irgsp1_rep	CDS	21040975	21041166	.	-	0	Parent=Os05t0428700-01
Chr05	irgsp1_rep	CDS	21040787	21040862	.	-	0	Parent=Os05t0428700-01
Chr05	irgsp1_rep	CDS	21039996	21040604	.	-	2	Parent=Os05t0428700-01
Chr05	irgsp1_rep	CDS	21039731	21039891	.	-	2	Parent=Os05t0428700-01
Chr05	irgsp1_rep	three_prime_UTR	21039575	21039730	.	-	.	Parent=Os05t0428700-01
Chr05	irgsp1_rep	mRNA	21050904	21054702	.	-	.	ID=Os05t0429000-01;Name=Os05t0429000-01;Locus_id=Os05g0429000;Oryzabase Gene Symbol Synonym(s)=OsSHM5%2C SHM5%2C OsSHMT5%2C SHMT5%2C OsSHTM2%2C SHTM2;Oryzabase Gene Name Synonym(s)=serine hydroxymethyltransferase 5%2C serine hydroxymethyltransferase-2;Note=Similar to Hydroxymethyltransferase.;Transcript_evidence=AK109617 (DDBJ%2C Best hit);ORF_evidence=B9FPQ8 (UniProt);GO=Biological Process: glycine metabolic process (GO:0006544),Biological Process: L-serine metabolic process (GO:0006563),Molecular Function: catalytic activity (GO:0003824),Molecular Function: glycine hydroxymethyltransferase activity (GO:0004372),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Serine hydroxymethyltransferase (IPR001085),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424),WD40 repeat%2C conserved site (IPR019775),WD40 repeat 2 (IPR019782),Serine hydroxymethyltransferase%2C pyridoxal phosphate binding site (IPR019798);NIAS_FLcDNA=002-137-H03;Oryzabase=19254;Expression=AK109617;TENOR=Os05t0429000-01;KEGG=Os05t0429000-01 (EC:2.1.2.1)
Chr05	irgsp1_rep	five_prime_UTR	21054542	21054702	.	-	.	Parent=Os05t0429000-01
Chr05	irgsp1_rep	CDS	21053510	21054541	.	-	0	Parent=Os05t0429000-01
Chr05	irgsp1_rep	CDS	21052626	21053031	.	-	0	Parent=Os05t0429000-01
Chr05	irgsp1_rep	CDS	21051485	21051586	.	-	2	Parent=Os05t0429000-01
Chr05	irgsp1_rep	CDS	21051169	21051392	.	-	2	Parent=Os05t0429000-01
Chr05	irgsp1_rep	three_prime_UTR	21050904	21051168	.	-	.	Parent=Os05t0429000-01
Chr05	irgsp1_rep	mRNA	21055247	21056891	.	+	.	ID=Os05t0429100-01;Name=Os05t0429100-01;Locus_id=Os05g0429100;Note=Hypothetical protein.;Transcript_evidence=AK100059 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013158H21;Expression=AK100059;TENOR=Os05t0429100-01;KEGG=Os05t0429100-01
Chr05	irgsp1_rep	five_prime_UTR	21055247	21056157	.	+	.	Parent=Os05t0429100-01
Chr05	irgsp1_rep	CDS	21056158	21056490	.	+	0	Parent=Os05t0429100-01
Chr05	irgsp1_rep	three_prime_UTR	21056491	21056891	.	+	.	Parent=Os05t0429100-01
Chr05	irgsp1_rep	mRNA	21055296	21056891	.	+	.	ID=Os05t0429100-02;Name=Os05t0429100-02;Locus_id=Os05g0429100;Note=Hypothetical protein.;Transcript_evidence=AK060658 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-028-A09;Expression=AK060658;TENOR=Os05t0429100-02;KEGG=Os05t0429100-02
Chr05	irgsp1_rep	five_prime_UTR	21055296	21056157	.	+	.	Parent=Os05t0429100-02
Chr05	irgsp1_rep	CDS	21056158	21056490	.	+	0	Parent=Os05t0429100-02
Chr05	irgsp1_rep	three_prime_UTR	21056491	21056891	.	+	.	Parent=Os05t0429100-02
Chr05	irgsp1_rep	mRNA	21065449	21068343	.	-	.	ID=Os05t0429400-01;Name=Os05t0429400-01;Locus_id=Os05g0429400;Note=Phosphatidylinositol transfer protein-like%2C N-terminal domain containing protein.;Transcript_evidence=AK069844 (DDBJ%2C Best hit);ORF_evidence=B6TVE3 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: integral to membrane (GO:0016021);InterPro=Cellular retinaldehyde-binding/triple function%2C C-terminal (IPR001251),Cellular retinaldehyde-binding/triple function%2C N-terminal (IPR008273),GOLD (IPR009038),Phosphatidylinositol transfer protein-like%2C N-terminal (IPR011074);NIAS_FLcDNA=J023031F21;Expression=AK069844;TENOR=Os05t0429400-01;KEGG=Os05t0429400-01
Chr05	irgsp1_rep	five_prime_UTR	21068231	21068343	.	-	.	Parent=Os05t0429400-01
Chr05	irgsp1_rep	CDS	21067004	21068230	.	-	0	Parent=Os05t0429400-01
Chr05	irgsp1_rep	CDS	21066452	21066576	.	-	0	Parent=Os05t0429400-01
Chr05	irgsp1_rep	CDS	21066217	21066358	.	-	1	Parent=Os05t0429400-01
Chr05	irgsp1_rep	CDS	21065852	21066115	.	-	0	Parent=Os05t0429400-01
Chr05	irgsp1_rep	three_prime_UTR	21065449	21065851	.	-	.	Parent=Os05t0429400-01
Chr05	irgsp1_rep	mRNA	21078441	21079882	.	-	.	ID=Os05t0429500-01;Name=Os05t0429500-01;Locus_id=Os05g0429500;Note=Similar to dienelactone hydrolase family protein.;Transcript_evidence=AK066891 (DDBJ%2C Best hit);ORF_evidence=XP_002891182.1 (RefSeq);NIAS_FLcDNA=J013089B12;TENOR=Os05t0429500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	21079881	21079882	.	-	.	Parent=Os05t0429500-01
Chr05	irgsp1_rep	CDS	21079764	21079880	.	-	0	Parent=Os05t0429500-01
Chr05	irgsp1_rep	CDS	21079284	21079421	.	-	0	Parent=Os05t0429500-01
Chr05	irgsp1_rep	three_prime_UTR	21078441	21079283	.	-	.	Parent=Os05t0429500-01
Chr05	irgsp1_rep	mRNA	21078436	21079387	.	-	.	ID=Os05t0429500-02;Name=Os05t0429500-02;Locus_id=Os05g0429500;Note=Dienelactone hydrolase domain containing protein.;Transcript_evidence=AK058688 (DDBJ%2C Best hit);ORF_evidence=XP_002891182.1 (RefSeq);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Dienelactone hydrolase (IPR002925);NIAS_FLcDNA=001-019-A12;TENOR=Os05t0429500-02;KEGG=Os05t0429500-02
Chr05	irgsp1_rep	five_prime_UTR	21079386	21079387	.	-	.	Parent=Os05t0429500-02
Chr05	irgsp1_rep	CDS	21079288	21079385	.	-	0	Parent=Os05t0429500-02
Chr05	irgsp1_rep	CDS	21078690	21079215	.	-	1	Parent=Os05t0429500-02
Chr05	irgsp1_rep	three_prime_UTR	21078436	21078689	.	-	.	Parent=Os05t0429500-02
Chr05	irgsp1_rep	mRNA	21081142	21084058	.	-	.	ID=Os05t0429700-01;Name=Os05t0429700-01;Locus_id=Os05g0429700;Note=C2 calcium-dependent membrane targeting domain containing protein.;Transcript_evidence=AK103559 (DDBJ%2C Best hit);ORF_evidence=NP_001152458.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),Phosphoribosyltransferase C-terminal (IPR013583),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=J033132J08;Expression=AK103559;TENOR=Os05t0429700-01;KEGG=Os05t0429700-01
Chr05	irgsp1_rep	five_prime_UTR	21083928	21084058	.	-	.	Parent=Os05t0429700-01
Chr05	irgsp1_rep	CDS	21081513	21083927	.	-	0	Parent=Os05t0429700-01
Chr05	irgsp1_rep	three_prime_UTR	21081142	21081512	.	-	.	Parent=Os05t0429700-01
Chr05	irgsp1_rep	mRNA	21081086	21083522	.	-	.	ID=Os05t0429700-02;Name=Os05t0429700-02;Locus_id=Os05g0429700;Note=Hypothetical conserved gene.;Transcript_evidence=AK069203 (DDBJ%2C Best hit);ORF_evidence=B8AYI7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),Phosphoribosyltransferase C-terminal (IPR013583),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=J023008D03;Expression=AK069203;TENOR=Os05t0429700-02;KEGG=Os05t0429700-02
Chr05	irgsp1_rep	CDS	21081513	21083522	.	-	0	Parent=Os05t0429700-02
Chr05	irgsp1_rep	three_prime_UTR	21081086	21081512	.	-	.	Parent=Os05t0429700-02
Chr05	irgsp1_rep	mRNA	21081154	21082973	.	-	.	ID=Os05t0429700-03;Name=Os05t0429700-03;Locus_id=Os05g0429700;Note=Similar to phosphoribosylanthranilate transferase.;Transcript_evidence=AK059651 (DDBJ%2C Best hit);ORF_evidence=NP_001152458.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),Phosphoribosyltransferase C-terminal (IPR013583),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=001-031-C07;Expression=AK059651;TENOR=Os05t0429700-03;KEGG=Os05t0429700-03
Chr05	irgsp1_rep	CDS	21081513	21082973	.	-	0	Parent=Os05t0429700-03
Chr05	irgsp1_rep	three_prime_UTR	21081154	21081512	.	-	.	Parent=Os05t0429700-03
Chr05	irgsp1_rep	mRNA	21081512	21083754	.	+	.	ID=Os05t0429751-00;Name=Os05t0429751-00;Locus_id=Os05g0429751;Note=Hypothetical protein.;Transcript_evidence=tplb0048i05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0429751-00
Chr05	irgsp1_rep	five_prime_UTR	21081512	21082811	.	+	.	Parent=Os05t0429751-00
Chr05	irgsp1_rep	CDS	21082812	21083753	.	+	0	Parent=Os05t0429751-00
Chr05	irgsp1_rep	three_prime_UTR	21083754	21083754	.	+	.	Parent=Os05t0429751-00
Chr05	irgsp1_rep	mRNA	21091737	21093414	.	-	.	ID=Os05t0429802-01;Name=Os05t0429802-01;Locus_id=Os05g0429802;Note=Conserved hypothetical protein.;Transcript_evidence=AK289136 (DDBJ%2C Best hit);ORF_evidence=Q6YXE2 (UniProt);NIAS_FLcDNA=J090099C11;TENOR=Os05t0429802-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	21091908	21093414	.	-	.	Parent=Os05t0429802-01
Chr05	irgsp1_rep	CDS	21091737	21091907	.	-	0	Parent=Os05t0429802-01
Chr05	irgsp1_rep	mRNA	21099467	21100588	.	-	.	ID=Os05t0429900-01;Name=Os05t0429900-01;Locus_id=Os05g0429900;CGSNL Gene Symbol=DLN141;CGSNL Gene Name=DLN REPRESSOR 141;Oryzabase Gene Symbol Synonym(s)=R2R3-MYB%2C OsDLN141;Oryzabase Gene Name Synonym(s)=DLN repressor 141%2C DLN motif protein 141;Note=Similar to MybHv5 (Fragment).;Transcript_evidence=AK099108 (DDBJ%2C Best hit),AK066834 (DDBJ%2C Best hit),AK104053 (DDBJ%2C Best hit);ORF_evidence=O23889 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J023030O22,J013083O13,001-023-G03;Oryzabase=16296;Expression=AK099108;TENOR=Os05t0429900-01;KEGG=Os05t0429900-01
Chr05	irgsp1_rep	five_prime_UTR	21100448	21100588	.	-	.	Parent=Os05t0429900-01
Chr05	irgsp1_rep	CDS	21100185	21100447	.	-	0	Parent=Os05t0429900-01
Chr05	irgsp1_rep	CDS	21099565	21100084	.	-	1	Parent=Os05t0429900-01
Chr05	irgsp1_rep	three_prime_UTR	21099467	21099564	.	-	.	Parent=Os05t0429900-01
Chr05	irgsp1_rep	mRNA	21112635	21117363	.	+	.	ID=Os05t0430200-01;Name=Os05t0430200-01;Locus_id=Os05g0430200;CGSNL Gene Symbol=WSL8;CGSNL Gene Name=WHITE STRIPE LEAF 8;Oryzabase Gene Symbol Synonym(s)=OsWSL8%2C OsdNK1%2C dNK1;Oryzabase Gene Name Synonym(s)=white stripe leaf 8%2C deoxyribonucleoside kinase 1;Note=Putative deoxyribonucleoside kinase;Transcript_evidence=AK071740;ORF_evidence=Q5TKI7;InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),Deoxynucleoside kinase domain (IPR031314);NIAS_FLcDNA=J023108J12;Manual Curation=September 10%2C 2019;Oryzabase=23340;TENOR=Os05t0430200-01
Chr05	irgsp1_rep	five_prime_UTR	21112635	21112714	.	+	.	Parent=Os05t0430200-01
Chr05	irgsp1_rep	five_prime_UTR	21112903	21113133	.	+	.	Parent=Os05t0430200-01
Chr05	irgsp1_rep	five_prime_UTR	21115483	21115506	.	+	.	Parent=Os05t0430200-01
Chr05	irgsp1_rep	CDS	21115507	21115941	.	+	0	Parent=Os05t0430200-01
Chr05	irgsp1_rep	CDS	21116061	21116438	.	+	0	Parent=Os05t0430200-01
Chr05	irgsp1_rep	CDS	21116522	21116589	.	+	0	Parent=Os05t0430200-01
Chr05	irgsp1_rep	CDS	21116836	21117049	.	+	1	Parent=Os05t0430200-01
Chr05	irgsp1_rep	three_prime_UTR	21117050	21117363	.	+	.	Parent=Os05t0430200-01
Chr05	irgsp1_rep	mRNA	21115724	21117398	.	+	.	ID=Os05t0430200-02;Name=Os05t0430200-02;Locus_id=Os05g0430200;CGSNL Gene Symbol=WSL8;CGSNL Gene Name=WHITE STRIPE LEAF 8;Oryzabase Gene Symbol Synonym(s)=OsWSL8%2C OsdNK1%2C dNK1;Oryzabase Gene Name Synonym(s)=white stripe leaf 8%2C deoxyribonucleoside kinase 1;Note=Similar to ATP binding protein.;Transcript_evidence=AK059420 (DDBJ%2C Best hit);ORF_evidence=NP_001151951.1 (RefSeq);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Deoxynucleoside kinase (IPR002624);NIAS_FLcDNA=001-027-D11;Oryzabase=23340;Expression=AK059420;TENOR=Os05t0430200-02;KEGG=Os05t0430200-02 (EC:2.7.1.74)
Chr05	irgsp1_rep	five_prime_UTR	21115724	21115725	.	+	.	Parent=Os05t0430200-02
Chr05	irgsp1_rep	CDS	21115726	21115941	.	+	0	Parent=Os05t0430200-02
Chr05	irgsp1_rep	CDS	21116061	21116438	.	+	0	Parent=Os05t0430200-02
Chr05	irgsp1_rep	CDS	21116522	21116589	.	+	0	Parent=Os05t0430200-02
Chr05	irgsp1_rep	CDS	21116836	21117049	.	+	1	Parent=Os05t0430200-02
Chr05	irgsp1_rep	three_prime_UTR	21117050	21117398	.	+	.	Parent=Os05t0430200-02
Chr05	irgsp1_rep	mRNA	21112585	21117398	.	+	.	ID=Os05t0430200-03;Name=Os05t0430200-03;Locus_id=Os05g0430200;RAP-DB Gene Symbol Synonym(s)=WSL8%2C OsdNK1;RAP-DB Gene Name Synonym(s)=WHITE STRIPE LEAF8%2C Deoxyribonucleoside kinase 1;CGSNL Gene Symbol=WSL8;CGSNL Gene Name=WHITE STRIPE LEAF 8;Oryzabase Gene Symbol Synonym(s)=OsWSL8%2C OsdNK1%2C dNK1;Oryzabase Gene Name Synonym(s)=white stripe leaf 8%2C deoxyribonucleoside kinase 1;Note=Deoxyribonucleoside kinase%2C Chloroplast development;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),Deoxynucleoside kinase domain (IPR031314);Manual Curation=September 10%2C 2019;Literature_PMID=31485784;Oryzabase=23340;Subcellular location=chloroplast (GO:0009507)
Chr05	irgsp1_rep	five_prime_UTR	21112585	21112671	.	+	.	Parent=Os05t0430200-03
Chr05	irgsp1_rep	CDS	21112672	21113133	.	+	0	Parent=Os05t0430200-03
Chr05	irgsp1_rep	CDS	21115483	21115941	.	+	0	Parent=Os05t0430200-03
Chr05	irgsp1_rep	CDS	21116061	21116438	.	+	0	Parent=Os05t0430200-03
Chr05	irgsp1_rep	CDS	21116522	21116589	.	+	0	Parent=Os05t0430200-03
Chr05	irgsp1_rep	CDS	21116836	21117049	.	+	1	Parent=Os05t0430200-03
Chr05	irgsp1_rep	three_prime_UTR	21117050	21117398	.	+	.	Parent=Os05t0430200-03
Chr05	irgsp1_rep	mRNA	21120817	21126785	.	+	.	ID=Os05t0430300-01;Name=Os05t0430300-01;Locus_id=Os05g0430300;CGSNL Gene Symbol=DUF668-8;CGSNL Gene Name=DUF668 FAMILY MEMBER 8;Oryzabase Gene Symbol Synonym(s)=OsDUF668-8;Oryzabase Gene Name Synonym(s)=DUF668 family member 8;Note=Protein of unknown function DUF668 family protein.;Transcript_evidence=AK121670 (DDBJ%2C Best hit);ORF_evidence=Q9XID5 (UniProt);InterPro=Protein of unknown function DUF668 (IPR007700),Protein of unknown function DUF3475 (IPR021864);NIAS_FLcDNA=J033067N19;Oryzabase=23484;Expression=AK121670;TENOR=Os05t0430300-01;KEGG=Os05t0430300-01
Chr05	irgsp1_rep	five_prime_UTR	21120817	21121027	.	+	.	Parent=Os05t0430300-01
Chr05	irgsp1_rep	five_prime_UTR	21121118	21121418	.	+	.	Parent=Os05t0430300-01
Chr05	irgsp1_rep	CDS	21121419	21121727	.	+	0	Parent=Os05t0430300-01
Chr05	irgsp1_rep	CDS	21122504	21122823	.	+	0	Parent=Os05t0430300-01
Chr05	irgsp1_rep	CDS	21122970	21123062	.	+	1	Parent=Os05t0430300-01
Chr05	irgsp1_rep	CDS	21123142	21123232	.	+	1	Parent=Os05t0430300-01
Chr05	irgsp1_rep	CDS	21124073	21124160	.	+	0	Parent=Os05t0430300-01
Chr05	irgsp1_rep	CDS	21124574	21124671	.	+	2	Parent=Os05t0430300-01
Chr05	irgsp1_rep	CDS	21124853	21124922	.	+	0	Parent=Os05t0430300-01
Chr05	irgsp1_rep	CDS	21125033	21125133	.	+	2	Parent=Os05t0430300-01
Chr05	irgsp1_rep	CDS	21125453	21125569	.	+	0	Parent=Os05t0430300-01
Chr05	irgsp1_rep	CDS	21125663	21125739	.	+	0	Parent=Os05t0430300-01
Chr05	irgsp1_rep	CDS	21125837	21125881	.	+	1	Parent=Os05t0430300-01
Chr05	irgsp1_rep	CDS	21125962	21126475	.	+	1	Parent=Os05t0430300-01
Chr05	irgsp1_rep	three_prime_UTR	21126476	21126785	.	+	.	Parent=Os05t0430300-01
Chr05	irgsp1_rep	mRNA	21120839	21126786	.	+	.	ID=Os05t0430300-02;Name=Os05t0430300-02;Locus_id=Os05g0430300;CGSNL Gene Symbol=DUF668-8;CGSNL Gene Name=DUF668 FAMILY MEMBER 8;Oryzabase Gene Symbol Synonym(s)=OsDUF668-8;Oryzabase Gene Name Synonym(s)=DUF668 family member 8;Note=Similar to predicted protein.;Transcript_evidence=AK064776 (DDBJ%2C Best hit);ORF_evidence=B8AYI8 (UniProt);InterPro=Protein of unknown function DUF3475 (IPR021864);NIAS_FLcDNA=J013000B01;Oryzabase=23484;Expression=AK064776;TENOR=Os05t0430300-02;KEGG=Os05t0430300-02
Chr05	irgsp1_rep	five_prime_UTR	21120839	21121027	.	+	.	Parent=Os05t0430300-02
Chr05	irgsp1_rep	five_prime_UTR	21121118	21121418	.	+	.	Parent=Os05t0430300-02
Chr05	irgsp1_rep	CDS	21121419	21121727	.	+	0	Parent=Os05t0430300-02
Chr05	irgsp1_rep	CDS	21122504	21122823	.	+	0	Parent=Os05t0430300-02
Chr05	irgsp1_rep	CDS	21122970	21123132	.	+	1	Parent=Os05t0430300-02
Chr05	irgsp1_rep	three_prime_UTR	21123133	21123232	.	+	.	Parent=Os05t0430300-02
Chr05	irgsp1_rep	three_prime_UTR	21124073	21124160	.	+	.	Parent=Os05t0430300-02
Chr05	irgsp1_rep	three_prime_UTR	21124574	21124671	.	+	.	Parent=Os05t0430300-02
Chr05	irgsp1_rep	three_prime_UTR	21124853	21124922	.	+	.	Parent=Os05t0430300-02
Chr05	irgsp1_rep	three_prime_UTR	21125033	21125133	.	+	.	Parent=Os05t0430300-02
Chr05	irgsp1_rep	three_prime_UTR	21125453	21125569	.	+	.	Parent=Os05t0430300-02
Chr05	irgsp1_rep	three_prime_UTR	21125663	21125739	.	+	.	Parent=Os05t0430300-02
Chr05	irgsp1_rep	three_prime_UTR	21125837	21125881	.	+	.	Parent=Os05t0430300-02
Chr05	irgsp1_rep	three_prime_UTR	21125962	21126786	.	+	.	Parent=Os05t0430300-02
Chr05	irgsp1_rep	mRNA	21126879	21129643	.	-	.	ID=Os05t0430400-01;Name=Os05t0430400-01;Locus_id=Os05g0430400;Note=GTP1/OBG domain containing protein.;Transcript_evidence=AK063573 (DDBJ%2C Best hit);ORF_evidence=XP_002874896.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=GTP-binding domain%2C HSR1-related (IPR002917),GTP1/OBG (IPR006073),GTP-binding protein%2C ribosome biogenesis%2C YlqF (IPR019991),GTP-binding protein%2C orthogonal bundle domain (IPR023179);NIAS_FLcDNA=001-117-G09;Expression=AK063573;TENOR=Os05t0430400-01;KEGG=Os05t0430400-01
Chr05	irgsp1_rep	five_prime_UTR	21129630	21129643	.	-	.	Parent=Os05t0430400-01
Chr05	irgsp1_rep	CDS	21129489	21129629	.	-	0	Parent=Os05t0430400-01
Chr05	irgsp1_rep	CDS	21129036	21129182	.	-	0	Parent=Os05t0430400-01
Chr05	irgsp1_rep	CDS	21128802	21128918	.	-	0	Parent=Os05t0430400-01
Chr05	irgsp1_rep	CDS	21128580	21128723	.	-	0	Parent=Os05t0430400-01
Chr05	irgsp1_rep	CDS	21128394	21128480	.	-	0	Parent=Os05t0430400-01
Chr05	irgsp1_rep	CDS	21127883	21127998	.	-	0	Parent=Os05t0430400-01
Chr05	irgsp1_rep	CDS	21127568	21127749	.	-	1	Parent=Os05t0430400-01
Chr05	irgsp1_rep	CDS	21127375	21127432	.	-	2	Parent=Os05t0430400-01
Chr05	irgsp1_rep	CDS	21127169	21127292	.	-	1	Parent=Os05t0430400-01
Chr05	irgsp1_rep	three_prime_UTR	21126879	21127168	.	-	.	Parent=Os05t0430400-01
Chr05	irgsp1_rep	mRNA	21135258	21138615	.	-	.	ID=Os05t0430700-01;Name=Os05t0430700-01;Locus_id=Os05g0430700;Note=Protein of unknown function DUF803 family protein.;Transcript_evidence=AK121485 (DDBJ%2C Best hit);ORF_evidence=B6TRR3 (UniProt);InterPro=Protein of unknown function DUF803 (IPR008521);NIAS_FLcDNA=J023150B15;Expression=AK121485;TENOR=Os05t0430700-01;KEGG=Os05t0430700-01
Chr05	irgsp1_rep	five_prime_UTR	21138386	21138615	.	-	.	Parent=Os05t0430700-01
Chr05	irgsp1_rep	CDS	21138232	21138385	.	-	0	Parent=Os05t0430700-01
Chr05	irgsp1_rep	CDS	21137977	21138033	.	-	2	Parent=Os05t0430700-01
Chr05	irgsp1_rep	CDS	21137794	21137884	.	-	2	Parent=Os05t0430700-01
Chr05	irgsp1_rep	CDS	21137516	21137676	.	-	1	Parent=Os05t0430700-01
Chr05	irgsp1_rep	CDS	21137316	21137443	.	-	2	Parent=Os05t0430700-01
Chr05	irgsp1_rep	CDS	21137087	21137224	.	-	0	Parent=Os05t0430700-01
Chr05	irgsp1_rep	CDS	21136916	21137008	.	-	0	Parent=Os05t0430700-01
Chr05	irgsp1_rep	CDS	21136707	21136824	.	-	0	Parent=Os05t0430700-01
Chr05	irgsp1_rep	CDS	21135874	21136001	.	-	2	Parent=Os05t0430700-01
Chr05	irgsp1_rep	three_prime_UTR	21135258	21135873	.	-	.	Parent=Os05t0430700-01
Chr05	irgsp1_rep	mRNA	21141378	21143453	.	+	.	ID=Os05t0430800-01;Name=Os05t0430800-01;Locus_id=Os05g0430800;CGSNL Gene Symbol=ATASE3;CGSNL Gene Name=AMIDO PHOSPHORIBOSYLTRANSFERASE 3;Oryzabase Gene Symbol Synonym(s)=Atase3%2C OsATASE3;Oryzabase Gene Name Synonym(s)=Gln synthetase%2C amido phosphoribosyltransferase 3;Note=Similar to Amidophosphoribosyltransferase%2C chloroplast precursor (EC 2.4.2.14) (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPAT).;Transcript_evidence=AK101162 (DDBJ%2C Best hit);ORF_evidence=A2Y4Z1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: purine base biosynthetic process (GO:0009113),Biological Process: nucleoside metabolic process (GO:0009116),Molecular Function: amidophosphoribosyltransferase activity (GO:0004044);InterPro=Glutamine amidotransferase%2C class-II (IPR000583),Phosphoribosyltransferase (IPR000836),Amidophosphoribosyl transferase (IPR005854),Glutamine amidotransferase%2C type II (IPR017932);NIAS_FLcDNA=J033027P19;Oryzabase=12469;Expression=AK101162;TENOR=Os05t0430800-01;KEGG=Os05t0430800-01 (EC:2.4.2.14)
Chr05	irgsp1_rep	five_prime_UTR	21141378	21141436	.	+	.	Parent=Os05t0430800-01
Chr05	irgsp1_rep	CDS	21141437	21143062	.	+	0	Parent=Os05t0430800-01
Chr05	irgsp1_rep	three_prime_UTR	21143063	21143453	.	+	.	Parent=Os05t0430800-01
Chr05	irgsp1_rep	mRNA	21144334	21148363	.	-	.	ID=Os05t0430900-01;Name=Os05t0430900-01;Locus_id=Os05g0430900;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=TGF-beta receptor%2C type I/II extracellular region family protein.;Transcript_evidence=AK068274 (DDBJ%2C Best hit);ORF_evidence=B6SWT0 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),PTR2 family proton/oligopeptide symporter%2C conserved site (IPR018456);NIAS_FLcDNA=J013145B01;Oryzabase=23665;Expression=AK068274;TENOR=Os05t0430900-01;KEGG=Os05t0430900-01
Chr05	irgsp1_rep	five_prime_UTR	21148321	21148363	.	-	.	Parent=Os05t0430900-01
Chr05	irgsp1_rep	CDS	21148224	21148320	.	-	0	Parent=Os05t0430900-01
Chr05	irgsp1_rep	CDS	21147931	21148148	.	-	2	Parent=Os05t0430900-01
Chr05	irgsp1_rep	CDS	21144513	21145790	.	-	0	Parent=Os05t0430900-01
Chr05	irgsp1_rep	three_prime_UTR	21144334	21144512	.	-	.	Parent=Os05t0430900-01
Chr05	irgsp1_rep	mRNA	21162574	21162980	.	-	.	ID=Os05t0431266-00;Name=Os05t0431266-00;Locus_id=Os05g0431266;Note=Hypothetical conserved gene.;Transcript_evidence=EU951221 (DDBJ);ORF_evidence=NP_001060448.1 (RefSeq);TENOR=Os05t0431266-00;KEGG=Os05t0431266-00
Chr05	irgsp1_rep	five_prime_UTR	21162829	21162980	.	-	.	Parent=Os05t0431266-00
Chr05	irgsp1_rep	CDS	21162592	21162828	.	-	0	Parent=Os05t0431266-00
Chr05	irgsp1_rep	three_prime_UTR	21162574	21162591	.	-	.	Parent=Os05t0431266-00
Chr05	irgsp1_rep	mRNA	21164874	21166635	.	-	.	ID=Os05t0431333-00;Name=Os05t0431333-00;Locus_id=Os05g0431333;Note=Hypothetical gene.;Transcript_evidence=CT837869 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os05t0431333-00;KEGG=Os05t0431333-00
Chr05	irgsp1_rep	five_prime_UTR	21166294	21166635	.	-	.	Parent=Os05t0431333-00
Chr05	irgsp1_rep	five_prime_UTR	21166027	21166113	.	-	.	Parent=Os05t0431333-00
Chr05	irgsp1_rep	five_prime_UTR	21165366	21165940	.	-	.	Parent=Os05t0431333-00
Chr05	irgsp1_rep	CDS	21165105	21165365	.	-	0	Parent=Os05t0431333-00
Chr05	irgsp1_rep	three_prime_UTR	21164874	21165104	.	-	.	Parent=Os05t0431333-00
Chr05	irgsp1_rep	mRNA	21184600	21191740	.	-	.	ID=Os05t0431700-01;Name=Os05t0431700-01;Locus_id=Os05g0431700;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Similar to peptide transporter PTR2-B.;Transcript_evidence=AK242663 (DDBJ%2C Best hit);ORF_evidence=B6SWT0 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),PTR2 family proton/oligopeptide symporter%2C conserved site (IPR018456);NIAS_FLcDNA=J090029B20;Oryzabase=23666;TENOR=Os05t0431700-01;KEGG=Os05t0431700-01
Chr05	irgsp1_rep	five_prime_UTR	21191634	21191740	.	-	.	Parent=Os05t0431700-01
Chr05	irgsp1_rep	CDS	21191468	21191633	.	-	0	Parent=Os05t0431700-01
Chr05	irgsp1_rep	CDS	21191151	21191368	.	-	2	Parent=Os05t0431700-01
Chr05	irgsp1_rep	CDS	21185698	21186242	.	-	0	Parent=Os05t0431700-01
Chr05	irgsp1_rep	CDS	21184782	21185598	.	-	1	Parent=Os05t0431700-01
Chr05	irgsp1_rep	three_prime_UTR	21184600	21184781	.	-	.	Parent=Os05t0431700-01
Chr05	irgsp1_rep	mRNA	21184824	21186314	.	+	.	ID=Os05t0431750-00;Name=Os05t0431750-00;Locus_id=Os05g0431750;Note=Hypothetical protein.;Transcript_evidence=tplb0061c10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0431750-00
Chr05	irgsp1_rep	five_prime_UTR	21184824	21185726	.	+	.	Parent=Os05t0431750-00
Chr05	irgsp1_rep	CDS	21185727	21186230	.	+	0	Parent=Os05t0431750-00
Chr05	irgsp1_rep	three_prime_UTR	21186231	21186314	.	+	.	Parent=Os05t0431750-00
Chr05	irgsp1_rep	mRNA	21198105	21198987	.	+	.	ID=Os05t0432200-00;Name=Os05t0432200-00;Locus_id=Os05g0432200;Note=Similar to Gibberellin-regulated protein 2 precursor.;Transcript_evidence=CT833251 (DDBJ%2C Best hit);ORF_evidence=NP_001152401.1 (RefSeq);InterPro=Gibberellin regulated protein (IPR003854);TENOR=Os05t0432200-00;KEGG=Os05t0432200-00
Chr05	irgsp1_rep	five_prime_UTR	21198105	21198197	.	+	.	Parent=Os05t0432200-00
Chr05	irgsp1_rep	CDS	21198198	21198260	.	+	0	Parent=Os05t0432200-00
Chr05	irgsp1_rep	CDS	21198373	21198406	.	+	0	Parent=Os05t0432200-00
Chr05	irgsp1_rep	CDS	21198513	21198694	.	+	2	Parent=Os05t0432200-00
Chr05	irgsp1_rep	three_prime_UTR	21198695	21198987	.	+	.	Parent=Os05t0432200-00
Chr05	irgsp1_rep	mRNA	21201969	21203280	.	+	.	ID=Os05t0432400-01;Name=Os05t0432400-01;Locus_id=Os05g0432400;Note=Hypothetical conserved gene.;Transcript_evidence=AK071117 (DDBJ%2C Best hit);ORF_evidence=B8AYJ5 (UniProt);InterPro=Protein of unknown function DUF1682 (IPR012879);NIAS_FLcDNA=J023080D08;Expression=AK071117;TENOR=Os05t0432400-01;KEGG=Os05t0432400-01
Chr05	irgsp1_rep	five_prime_UTR	21201969	21202083	.	+	.	Parent=Os05t0432400-01
Chr05	irgsp1_rep	CDS	21202084	21203136	.	+	0	Parent=Os05t0432400-01
Chr05	irgsp1_rep	three_prime_UTR	21203137	21203280	.	+	.	Parent=Os05t0432400-01
Chr05	irgsp1_rep	mRNA	21201977	21204644	.	+	.	ID=Os05t0432400-02;Name=Os05t0432400-02;Locus_id=Os05g0432400;Note=Protein of unknown function DUF1682 family protein.;Transcript_evidence=AK099260 (DDBJ%2C Best hit);ORF_evidence=B8AYJ5 (UniProt);InterPro=Protein of unknown function DUF1682 (IPR012879);NIAS_FLcDNA=J023004C23;Expression=AK099260;TENOR=Os05t0432400-02;KEGG=Os05t0432400-02
Chr05	irgsp1_rep	five_prime_UTR	21201977	21202083	.	+	.	Parent=Os05t0432400-02
Chr05	irgsp1_rep	CDS	21202084	21203124	.	+	0	Parent=Os05t0432400-02
Chr05	irgsp1_rep	CDS	21203969	21204172	.	+	0	Parent=Os05t0432400-02
Chr05	irgsp1_rep	CDS	21204257	21204484	.	+	0	Parent=Os05t0432400-02
Chr05	irgsp1_rep	three_prime_UTR	21204485	21204644	.	+	.	Parent=Os05t0432400-02
Chr05	irgsp1_rep	mRNA	21202035	21204725	.	+	.	ID=Os05t0432400-03;Name=Os05t0432400-03;Locus_id=Os05g0432400;Note=Protein of unknown function DUF1682 family protein.;Transcript_evidence=AK058468 (DDBJ%2C Best hit),AK072299 (DDBJ%2C Best hit);ORF_evidence=B8AYJ5 (UniProt);InterPro=Protein of unknown function DUF1682 (IPR012879);NIAS_FLcDNA=001-016-B07,J023011H02;Expression=AK058468;TENOR=Os05t0432400-03;KEGG=Os05t0432400-03
Chr05	irgsp1_rep	five_prime_UTR	21202035	21202083	.	+	.	Parent=Os05t0432400-03
Chr05	irgsp1_rep	CDS	21202084	21203124	.	+	0	Parent=Os05t0432400-03
Chr05	irgsp1_rep	CDS	21203969	21204172	.	+	0	Parent=Os05t0432400-03
Chr05	irgsp1_rep	CDS	21204257	21204484	.	+	0	Parent=Os05t0432400-03
Chr05	irgsp1_rep	three_prime_UTR	21204485	21204725	.	+	.	Parent=Os05t0432400-03
Chr05	irgsp1_rep	mRNA	21205867	21207683	.	+	.	ID=Os05t0432500-01;Name=Os05t0432500-01;Locus_id=Os05g0432500;Oryzabase Gene Symbol Synonym(s)=OsTMEM18%2C TMEM18;Oryzabase Gene Name Synonym(s)=Transmembrane Protein 18%2C AtTMEM18-homologous protein;Note=Similar to Transmembrane protein 18.;Transcript_evidence=AK072834 (DDBJ%2C Best hit);ORF_evidence=B6TMF2 (UniProt);NIAS_FLcDNA=J023139M04;Oryzabase=20417;Expression=AK072834;TENOR=Os05t0432500-01;KEGG=Os05t0432500-01
Chr05	irgsp1_rep	five_prime_UTR	21205867	21205951	.	+	.	Parent=Os05t0432500-01
Chr05	irgsp1_rep	CDS	21205952	21206092	.	+	0	Parent=Os05t0432500-01
Chr05	irgsp1_rep	CDS	21206219	21206324	.	+	0	Parent=Os05t0432500-01
Chr05	irgsp1_rep	CDS	21207058	21207206	.	+	2	Parent=Os05t0432500-01
Chr05	irgsp1_rep	CDS	21207325	21207420	.	+	0	Parent=Os05t0432500-01
Chr05	irgsp1_rep	three_prime_UTR	21207421	21207683	.	+	.	Parent=Os05t0432500-01
Chr05	irgsp1_rep	mRNA	21207922	21214430	.	-	.	ID=Os05t0432600-01;Name=Os05t0432600-01;Locus_id=Os05g0432600;Note=Alpha/beta hydrolase fold-1 domain containing protein.;Transcript_evidence=AK102235 (DDBJ%2C Best hit);ORF_evidence=NP_001151781.1 (RefSeq);NIAS_FLcDNA=J033088B21;Expression=AK102235;TENOR=Os05t0432600-01;KEGG=Os05t0432600-01
Chr05	irgsp1_rep	five_prime_UTR	21214364	21214430	.	-	.	Parent=Os05t0432600-01
Chr05	irgsp1_rep	CDS	21214116	21214363	.	-	0	Parent=Os05t0432600-01
Chr05	irgsp1_rep	CDS	21213934	21214023	.	-	1	Parent=Os05t0432600-01
Chr05	irgsp1_rep	CDS	21213339	21213406	.	-	1	Parent=Os05t0432600-01
Chr05	irgsp1_rep	CDS	21213169	21213266	.	-	2	Parent=Os05t0432600-01
Chr05	irgsp1_rep	CDS	21212951	21213040	.	-	0	Parent=Os05t0432600-01
Chr05	irgsp1_rep	CDS	21212198	21212320	.	-	0	Parent=Os05t0432600-01
Chr05	irgsp1_rep	CDS	21211961	21212038	.	-	0	Parent=Os05t0432600-01
Chr05	irgsp1_rep	CDS	21211603	21211688	.	-	0	Parent=Os05t0432600-01
Chr05	irgsp1_rep	CDS	21210064	21210112	.	-	1	Parent=Os05t0432600-01
Chr05	irgsp1_rep	CDS	21209750	21209806	.	-	0	Parent=Os05t0432600-01
Chr05	irgsp1_rep	CDS	21209274	21209404	.	-	0	Parent=Os05t0432600-01
Chr05	irgsp1_rep	CDS	21209111	21209194	.	-	1	Parent=Os05t0432600-01
Chr05	irgsp1_rep	CDS	21208662	21208728	.	-	1	Parent=Os05t0432600-01
Chr05	irgsp1_rep	CDS	21208114	21208590	.	-	0	Parent=Os05t0432600-01
Chr05	irgsp1_rep	three_prime_UTR	21207922	21208113	.	-	.	Parent=Os05t0432600-01
Chr05	irgsp1_rep	mRNA	21208123	21209401	.	+	.	ID=Os05t0432650-00;Name=Os05t0432650-00;Locus_id=Os05g0432650;Note=Hypothetical gene.;Transcript_evidence=EU950265 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0432650-00;KEGG=Os05t0432650-00
Chr05	irgsp1_rep	five_prime_UTR	21208123	21208258	.	+	.	Parent=Os05t0432650-00
Chr05	irgsp1_rep	CDS	21208259	21208569	.	+	0	Parent=Os05t0432650-00
Chr05	irgsp1_rep	CDS	21208640	21208694	.	+	1	Parent=Os05t0432650-00
Chr05	irgsp1_rep	three_prime_UTR	21208695	21208726	.	+	.	Parent=Os05t0432650-00
Chr05	irgsp1_rep	three_prime_UTR	21209109	21209187	.	+	.	Parent=Os05t0432650-00
Chr05	irgsp1_rep	three_prime_UTR	21209269	21209401	.	+	.	Parent=Os05t0432650-00
Chr05	irgsp1_rep	mRNA	21214834	21216797	.	-	.	ID=Os05t0432700-01;Name=Os05t0432700-01;Locus_id=Os05g0432700;Note=Similar to Pi starvation-induced protein (Fragment).;Transcript_evidence=AK058810 (DDBJ%2C Best hit);ORF_evidence=A6N0L6 (UniProt);GO=Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259);NIAS_FLcDNA=001-003-C11;TENOR=Os05t0432700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	21216796	21216797	.	-	.	Parent=Os05t0432700-01
Chr05	irgsp1_rep	CDS	21216575	21216795	.	-	0	Parent=Os05t0432700-01
Chr05	irgsp1_rep	CDS	21216244	21216341	.	-	1	Parent=Os05t0432700-01
Chr05	irgsp1_rep	CDS	21215072	21215169	.	-	2	Parent=Os05t0432700-01
Chr05	irgsp1_rep	three_prime_UTR	21214834	21215071	.	-	.	Parent=Os05t0432700-01
Chr05	irgsp1_rep	mRNA	21224846	21231030	.	-	.	ID=Os05t0433100-00;Name=Os05t0433100-00;Locus_id=Os05g0433100;Note=Similar to Serine/threonine-protein kinase SAPK4.;Transcript_evidence=ab initio prediction;ORF_evidence=B6UA53 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os05t0433100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	21230908	21231030	.	-	0	Parent=Os05t0433100-00
Chr05	irgsp1_rep	CDS	21230695	21230769	.	-	0	Parent=Os05t0433100-00
Chr05	irgsp1_rep	CDS	21230189	21230290	.	-	0	Parent=Os05t0433100-00
Chr05	irgsp1_rep	CDS	21225365	21225463	.	-	0	Parent=Os05t0433100-00
Chr05	irgsp1_rep	CDS	21224846	21225187	.	-	0	Parent=Os05t0433100-00
Chr05	irgsp1_rep	mRNA	21240878	21241617	.	+	.	ID=Os05t0433400-00;Name=Os05t0433400-00;Locus_id=Os05g0433400;Note=Protein of unknown function DUF1218 domain containing protein.;Transcript_evidence=EU976568 (DDBJ);ORF_evidence=NP_001055637.1 (RefSeq);InterPro=Protein of unknown function DUF1218 (IPR009606);TENOR=Os05t0433400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	21240878	21241209	.	+	0	Parent=Os05t0433400-00
Chr05	irgsp1_rep	CDS	21241308	21241617	.	+	1	Parent=Os05t0433400-00
Chr05	irgsp1_rep	mRNA	21247664	21248941	.	+	.	ID=Os05t0433500-00;Name=Os05t0433500-00;Locus_id=Os05g0433500;Note=Conserved hypothetical protein.;Transcript_evidence=AK360135 (DDBJ);ORF_evidence=Q6I5Y7 (UniProt);TENOR=Os05t0433500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	21247664	21247843	.	+	0	Parent=Os05t0433500-00
Chr05	irgsp1_rep	CDS	21247965	21248177	.	+	0	Parent=Os05t0433500-00
Chr05	irgsp1_rep	CDS	21248618	21248941	.	+	0	Parent=Os05t0433500-00
Chr05	irgsp1_rep	mRNA	21250808	21251632	.	+	.	ID=Os05t0433600-00;Name=Os05t0433600-00;Locus_id=Os05g0433600;Note=Conserved hypothetical protein.;Transcript_evidence=AK360135 (DDBJ);ORF_evidence=NP_001174442.1 (RefSeq);TENOR=Os05t0433600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	21250808	21250976	.	+	0	Parent=Os05t0433600-00
Chr05	irgsp1_rep	CDS	21251097	21251368	.	+	2	Parent=Os05t0433600-00
Chr05	irgsp1_rep	three_prime_UTR	21251369	21251410	.	+	.	Parent=Os05t0433600-00
Chr05	irgsp1_rep	three_prime_UTR	21251493	21251632	.	+	.	Parent=Os05t0433600-00
Chr05	irgsp1_rep	mRNA	21258792	21259780	.	+	.	ID=Os05t0433800-00;Name=Os05t0433800-00;Locus_id=Os05g0433800;Note=Protein of unknown function DUF1218 domain containing protein.;Transcript_evidence=AK360135 (DDBJ);ORF_evidence=NP_001174442.1 (RefSeq);InterPro=Protein of unknown function DUF1218 (IPR009606);TENOR=Os05t0433800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	21258792	21258910	.	+	.	Parent=Os05t0433800-00
Chr05	irgsp1_rep	five_prime_UTR	21259258	21259269	.	+	.	Parent=Os05t0433800-00
Chr05	irgsp1_rep	CDS	21259270	21259473	.	+	0	Parent=Os05t0433800-00
Chr05	irgsp1_rep	three_prime_UTR	21259474	21259482	.	+	.	Parent=Os05t0433800-00
Chr05	irgsp1_rep	three_prime_UTR	21259622	21259780	.	+	.	Parent=Os05t0433800-00
Chr05	irgsp1_rep	mRNA	21266342	21267625	.	+	.	ID=Os05t0433900-00;Name=Os05t0433900-00;Locus_id=Os05g0433900;Note=Conserved hypothetical protein.;Transcript_evidence=AK360486 (DDBJ);ORF_evidence=Q6I5L8 (UniProt);TENOR=Os05t0433900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	21266342	21266440	.	+	.	Parent=Os05t0433900-00
Chr05	irgsp1_rep	five_prime_UTR	21266564	21266650	.	+	.	Parent=Os05t0433900-00
Chr05	irgsp1_rep	CDS	21266651	21266783	.	+	0	Parent=Os05t0433900-00
Chr05	irgsp1_rep	CDS	21267216	21267625	.	+	2	Parent=Os05t0433900-00
Chr05	irgsp1_rep	mRNA	21294890	21295745	.	+	.	ID=Os05t0434600-00;Name=Os05t0434600-00;Locus_id=Os05g0434600;Note=Protein of unknown function DUF1218 domain containing protein.;Transcript_evidence=AK369703 (DDBJ);ORF_evidence=B9FIZ8 (UniProt);InterPro=Protein of unknown function DUF1218 (IPR009606);TENOR=Os05t0434600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	21294890	21295054	.	+	0	Parent=Os05t0434600-00
Chr05	irgsp1_rep	CDS	21295169	21295381	.	+	0	Parent=Os05t0434600-00
Chr05	irgsp1_rep	CDS	21295479	21295745	.	+	0	Parent=Os05t0434600-00
Chr05	irgsp1_rep	mRNA	21300430	21301218	.	+	.	ID=Os05t0434800-00;Name=Os05t0434800-00;Locus_id=Os05g0434800;Note=Protein of unknown function DUF1218 domain containing protein.;Transcript_evidence=AK354243 (DDBJ);ORF_evidence=B9FIZ8 (UniProt);InterPro=Protein of unknown function DUF1218 (IPR009606);TENOR=Os05t0434800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	21300430	21300446	.	+	.	Parent=Os05t0434800-00
Chr05	irgsp1_rep	CDS	21300447	21300554	.	+	0	Parent=Os05t0434800-00
Chr05	irgsp1_rep	CDS	21300671	21300906	.	+	0	Parent=Os05t0434800-00
Chr05	irgsp1_rep	CDS	21300972	21301218	.	+	1	Parent=Os05t0434800-00
Chr05	irgsp1_rep	mRNA	21306073	21307197	.	+	.	ID=Os05t0435100-00;Name=Os05t0435100-00;Locus_id=Os05g0435100;Note=Protein of unknown function DUF1218 domain containing protein.;Transcript_evidence=AK354243 (DDBJ);ORF_evidence=Q6I5L3 (UniProt);InterPro=Protein of unknown function DUF1218 (IPR009606);TENOR=Os05t0435100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	21306073	21306099	.	+	.	Parent=Os05t0435100-00
Chr05	irgsp1_rep	CDS	21306100	21306195	.	+	0	Parent=Os05t0435100-00
Chr05	irgsp1_rep	CDS	21306335	21306537	.	+	0	Parent=Os05t0435100-00
Chr05	irgsp1_rep	CDS	21306739	21306826	.	+	1	Parent=Os05t0435100-00
Chr05	irgsp1_rep	three_prime_UTR	21306827	21307197	.	+	.	Parent=Os05t0435100-00
Chr05	irgsp1_rep	mRNA	21311523	21312499	.	+	.	ID=Os05t0435300-00;Name=Os05t0435300-00;Locus_id=Os05g0435300;Note=Protein of unknown function DUF1218 domain containing protein.;Transcript_evidence=AK354243 (DDBJ);ORF_evidence=NP_001055642.1 (RefSeq);InterPro=Protein of unknown function DUF1218 (IPR009606);TENOR=Os05t0435300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	21311523	21311562	.	+	.	Parent=Os05t0435300-00
Chr05	irgsp1_rep	CDS	21311563	21311658	.	+	0	Parent=Os05t0435300-00
Chr05	irgsp1_rep	CDS	21311789	21311991	.	+	0	Parent=Os05t0435300-00
Chr05	irgsp1_rep	CDS	21312136	21312499	.	+	1	Parent=Os05t0435300-00
Chr05	irgsp1_rep	mRNA	21313246	21314060	.	-	.	ID=Os05t0435400-01;Name=Os05t0435400-01;Locus_id=Os05g0435400;Note=Conserved hypothetical protein.;Transcript_evidence=AK109595 (DDBJ%2C Best hit);ORF_evidence=A3A6X8 (UniProt);NIAS_FLcDNA=002-137-D03;Expression=AK109595;TENOR=Os05t0435400-01;KEGG=Os05t0435400-01
Chr05	irgsp1_rep	five_prime_UTR	21313963	21314060	.	-	.	Parent=Os05t0435400-01
Chr05	irgsp1_rep	CDS	21313624	21313962	.	-	0	Parent=Os05t0435400-01
Chr05	irgsp1_rep	three_prime_UTR	21313246	21313623	.	-	.	Parent=Os05t0435400-01
Chr05	irgsp1_rep	mRNA	21319083	21320460	.	-	.	ID=Os05t0435500-01;Name=Os05t0435500-01;Locus_id=Os05g0435500;Note=Conserved hypothetical protein.;Transcript_evidence=AK106481 (DDBJ%2C Best hit);ORF_evidence=NP_001046861.1 (RefSeq);NIAS_FLcDNA=002-104-F02;TENOR=Os05t0435500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	21319542	21320460	.	-	.	Parent=Os05t0435500-01
Chr05	irgsp1_rep	CDS	21319332	21319541	.	-	0	Parent=Os05t0435500-01
Chr05	irgsp1_rep	three_prime_UTR	21319083	21319331	.	-	.	Parent=Os05t0435500-01
Chr05	irgsp1_rep	mRNA	21315830	21319155	.	-	.	ID=Os05t0435500-02;Name=Os05t0435500-02;Locus_id=Os05g0435500;Note=Conserved hypothetical protein.;Transcript_evidence=AK066060 (DDBJ%2C Best hit);ORF_evidence=NP_001066709.1 (RefSeq);NIAS_FLcDNA=J013050O15;TENOR=Os05t0435500-02
Chr05	irgsp1_rep	five_prime_UTR	21318469	21319155	.	-	.	Parent=Os05t0435500-02
Chr05	irgsp1_rep	CDS	21318112	21318468	.	-	0	Parent=Os05t0435500-02
Chr05	irgsp1_rep	three_prime_UTR	21315830	21318111	.	-	.	Parent=Os05t0435500-02
Chr05	irgsp1_rep	mRNA	21315830	21316880	.	-	.	ID=Os05t0435500-03;Name=Os05t0435500-03;Locus_id=Os05g0435500;Note=Conserved hypothetical protein.;Transcript_evidence=AK101776 (DDBJ%2C Best hit);ORF_evidence=B9FJ00 (UniProt);NIAS_FLcDNA=J033064N13;TENOR=Os05t0435500-03
Chr05	irgsp1_rep	five_prime_UTR	21316879	21316880	.	-	.	Parent=Os05t0435500-03
Chr05	irgsp1_rep	CDS	21316723	21316878	.	-	0	Parent=Os05t0435500-03
Chr05	irgsp1_rep	three_prime_UTR	21315830	21316722	.	-	.	Parent=Os05t0435500-03
Chr05	irgsp1_rep	mRNA	21322823	21325134	.	+	.	ID=Os05t0435700-01;Name=Os05t0435700-01;Locus_id=Os05g0435700;CGSNL Gene Symbol=HAD2;CGSNL Gene Name=BETA-HYDROXYACYL-ACP DEHYDRATE 2;Oryzabase Gene Symbol Synonym(s)=OsHAD2;Oryzabase Gene Name Synonym(s)=Beta-hydroxyacyl-ACP dehydrate 2;Note=Similar to (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase (EC 4.2.1.-) ((3R)-hydroxymyristoyl ACP dehydrase).;Transcript_evidence=AK069677 (DDBJ%2C Best hit);ORF_evidence=NP_001149606.1 (RefSeq);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Cellular Component: cytoplasm (GO:0005737),Molecular Function: hydro-lyase activity (GO:0016836);InterPro=Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ (IPR010084),Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase%2C FabA/FabZ (IPR013114);NIAS_FLcDNA=J023027I11;Oryzabase=22433;Expression=AK069677;TENOR=Os05t0435700-01;KEGG=Os05t0435700-01 (EC:4.2.1.-)
Chr05	irgsp1_rep	five_prime_UTR	21322823	21322907	.	+	.	Parent=Os05t0435700-01
Chr05	irgsp1_rep	CDS	21322908	21323097	.	+	0	Parent=Os05t0435700-01
Chr05	irgsp1_rep	CDS	21323219	21323279	.	+	2	Parent=Os05t0435700-01
Chr05	irgsp1_rep	CDS	21323896	21324040	.	+	1	Parent=Os05t0435700-01
Chr05	irgsp1_rep	CDS	21324657	21324908	.	+	0	Parent=Os05t0435700-01
Chr05	irgsp1_rep	three_prime_UTR	21324909	21325134	.	+	.	Parent=Os05t0435700-01
Chr05	irgsp1_rep	mRNA	21325749	21328295	.	-	.	ID=Os05t0435800-01;Name=Os05t0435800-01;Locus_id=Os05g0435800;Oryzabase Gene Symbol Synonym(s)=OsSub47%2C SUB47;Oryzabase Gene Name Synonym(s)=Subtilisin 47%2C SUBTILISIN 47;Note=Similar to Subtilisin-like protease.;Transcript_evidence=AK288972 (DDBJ%2C Best hit),AK067138 (DDBJ%2C Best hit);ORF_evidence=C7E4J6 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);NIAS_FLcDNA=J090085G09,J013096L15;Oryzabase=20132;TENOR=Os05t0435800-01
Chr05	irgsp1_rep	five_prime_UTR	21328245	21328295	.	-	.	Parent=Os05t0435800-01
Chr05	irgsp1_rep	CDS	21325959	21328244	.	-	0	Parent=Os05t0435800-01
Chr05	irgsp1_rep	three_prime_UTR	21325749	21325958	.	-	.	Parent=Os05t0435800-01
Chr05	irgsp1_rep	mRNA	21343174	21345468	.	-	.	ID=Os05t0436100-00;Name=Os05t0436100-00;Locus_id=Os05g0436100;Note=Similar to predicted protein.;Transcript_evidence=BT066738 (DDBJ);ORF_evidence=E5GB79 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os05t0436100-00;KEGG=Os05t0436100-00
Chr05	irgsp1_rep	five_prime_UTR	21345371	21345468	.	-	.	Parent=Os05t0436100-00
Chr05	irgsp1_rep	CDS	21344658	21345370	.	-	0	Parent=Os05t0436100-00
Chr05	irgsp1_rep	CDS	21344431	21344535	.	-	1	Parent=Os05t0436100-00
Chr05	irgsp1_rep	CDS	21344177	21344299	.	-	1	Parent=Os05t0436100-00
Chr05	irgsp1_rep	CDS	21343871	21344041	.	-	1	Parent=Os05t0436100-00
Chr05	irgsp1_rep	CDS	21343639	21343768	.	-	1	Parent=Os05t0436100-00
Chr05	irgsp1_rep	CDS	21343174	21343548	.	-	0	Parent=Os05t0436100-00
Chr05	irgsp1_rep	mRNA	21370156	21376618	.	+	.	ID=Os05t0436400-01;Name=Os05t0436400-01;Locus_id=Os05g0436400;CGSNL Gene Symbol=SPP2;CGSNL Gene Name=SIGNAL PEPTIDE PEPTIDASE 2;Oryzabase Gene Symbol Synonym(s)=OsSPP2;Oryzabase Gene Name Synonym(s)=signal peptide peptidase 2;Note=Similar to signal peptide peptidase family protein.;Transcript_evidence=AK120229 (DDBJ%2C Best hit);ORF_evidence=XP_002875188.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A22%2C presenilin signal peptide (IPR006639),Peptidase A22B%2C signal peptide peptidase (IPR007369);NIAS_FLcDNA=J013043A06;Oryzabase=22730;Expression=AK120229;TENOR=Os05t0436400-01;KEGG=Os05t0436400-01 (EC:3.4.23.-)
Chr05	irgsp1_rep	five_prime_UTR	21370156	21370300	.	+	.	Parent=Os05t0436400-01
Chr05	irgsp1_rep	five_prime_UTR	21370414	21370490	.	+	.	Parent=Os05t0436400-01
Chr05	irgsp1_rep	five_prime_UTR	21370804	21370901	.	+	.	Parent=Os05t0436400-01
Chr05	irgsp1_rep	CDS	21370902	21370941	.	+	0	Parent=Os05t0436400-01
Chr05	irgsp1_rep	CDS	21371065	21371180	.	+	2	Parent=Os05t0436400-01
Chr05	irgsp1_rep	CDS	21371305	21371456	.	+	0	Parent=Os05t0436400-01
Chr05	irgsp1_rep	CDS	21371555	21371640	.	+	1	Parent=Os05t0436400-01
Chr05	irgsp1_rep	CDS	21372245	21372372	.	+	2	Parent=Os05t0436400-01
Chr05	irgsp1_rep	CDS	21372513	21372563	.	+	0	Parent=Os05t0436400-01
Chr05	irgsp1_rep	CDS	21372820	21372921	.	+	0	Parent=Os05t0436400-01
Chr05	irgsp1_rep	three_prime_UTR	21372922	21373298	.	+	.	Parent=Os05t0436400-01
Chr05	irgsp1_rep	three_prime_UTR	21373664	21373733	.	+	.	Parent=Os05t0436400-01
Chr05	irgsp1_rep	three_prime_UTR	21374580	21374716	.	+	.	Parent=Os05t0436400-01
Chr05	irgsp1_rep	three_prime_UTR	21375101	21375178	.	+	.	Parent=Os05t0436400-01
Chr05	irgsp1_rep	three_prime_UTR	21376158	21376618	.	+	.	Parent=Os05t0436400-01
Chr05	irgsp1_rep	mRNA	21370265	21370626	.	+	.	ID=Os05t0436400-02;Name=Os05t0436400-02;Locus_id=Os05g0436400;CGSNL Gene Symbol=SPP2;CGSNL Gene Name=SIGNAL PEPTIDE PEPTIDASE 2;Oryzabase Gene Symbol Synonym(s)=OsSPP2;Oryzabase Gene Name Synonym(s)=signal peptide peptidase 2;Note=Hypothetical gene.;Transcript_evidence=AK058377 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-014-G12;Oryzabase=22730;Expression=AK058377;TENOR=Os05t0436400-02;KEGG=Os05t0436400-02
Chr05	irgsp1_rep	CDS	21370265	21370516	.	+	0	Parent=Os05t0436400-02
Chr05	irgsp1_rep	three_prime_UTR	21370517	21370626	.	+	.	Parent=Os05t0436400-02
Chr05	irgsp1_rep	mRNA	21371320	21376448	.	+	.	ID=Os05t0436400-03;Name=Os05t0436400-03;Locus_id=Os05g0436400;CGSNL Gene Symbol=SPP2;CGSNL Gene Name=SIGNAL PEPTIDE PEPTIDASE 2;Oryzabase Gene Symbol Synonym(s)=OsSPP2;Oryzabase Gene Name Synonym(s)=signal peptide peptidase 2;Note=Similar to signal peptide peptidase family protein.;Transcript_evidence=AK060776 (DDBJ%2C Best hit);ORF_evidence=XP_002875188.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A22%2C presenilin signal peptide (IPR006639),Peptidase A22B%2C signal peptide peptidase (IPR007369);NIAS_FLcDNA=001-033-B12;Oryzabase=22730;TENOR=Os05t0436400-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	21371320	21371456	.	+	0	Parent=Os05t0436400-03
Chr05	irgsp1_rep	CDS	21371555	21371640	.	+	1	Parent=Os05t0436400-03
Chr05	irgsp1_rep	CDS	21372245	21372372	.	+	2	Parent=Os05t0436400-03
Chr05	irgsp1_rep	CDS	21372513	21372563	.	+	0	Parent=Os05t0436400-03
Chr05	irgsp1_rep	CDS	21372820	21372906	.	+	0	Parent=Os05t0436400-03
Chr05	irgsp1_rep	CDS	21373664	21373733	.	+	0	Parent=Os05t0436400-03
Chr05	irgsp1_rep	CDS	21374580	21374716	.	+	2	Parent=Os05t0436400-03
Chr05	irgsp1_rep	CDS	21375101	21375178	.	+	0	Parent=Os05t0436400-03
Chr05	irgsp1_rep	CDS	21376158	21376244	.	+	0	Parent=Os05t0436400-03
Chr05	irgsp1_rep	three_prime_UTR	21376245	21376448	.	+	.	Parent=Os05t0436400-03
Chr05	irgsp1_rep	mRNA	21385137	21386114	.	-	.	ID=Os05t0436700-00;Name=Os05t0436700-00;Locus_id=Os05g0436700;Note=Conserved hypothetical protein.;Transcript_evidence=EU948702 (DDBJ);ORF_evidence=Q6EQW7 (UniProt);TENOR=Os05t0436700-00
Chr05	irgsp1_rep	CDS	21385137	21386114	.	-	0	Parent=Os05t0436700-00
Chr05	irgsp1_rep	mRNA	21388790	21392518	.	+	.	ID=Os05t0436900-01;Name=Os05t0436900-01;Locus_id=Os05g0436900;Note=Zinc finger%2C DHHC-type domain containing protein.;Transcript_evidence=AK064076 (DDBJ%2C Best hit);ORF_evidence=B6TJT8 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C DHHC-type%2C palmitoyltransferase (IPR001594);NIAS_FLcDNA=002-100-A06;Expression=AK064076;TENOR=Os05t0436900-01;KEGG=Os05t0436900-01
Chr05	irgsp1_rep	five_prime_UTR	21388790	21388980	.	+	.	Parent=Os05t0436900-01
Chr05	irgsp1_rep	CDS	21388981	21389028	.	+	0	Parent=Os05t0436900-01
Chr05	irgsp1_rep	CDS	21389335	21389520	.	+	0	Parent=Os05t0436900-01
Chr05	irgsp1_rep	CDS	21389631	21389924	.	+	0	Parent=Os05t0436900-01
Chr05	irgsp1_rep	CDS	21391181	21391414	.	+	0	Parent=Os05t0436900-01
Chr05	irgsp1_rep	CDS	21391780	21392307	.	+	0	Parent=Os05t0436900-01
Chr05	irgsp1_rep	three_prime_UTR	21392308	21392518	.	+	.	Parent=Os05t0436900-01
Chr05	irgsp1_rep	mRNA	21388804	21392658	.	-	.	ID=Os05t0436950-00;Name=Os05t0436950-00;Locus_id=Os05g0436950;Note=Hypothetical protein.;Transcript_evidence=tplb0058b01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0436950-00
Chr05	irgsp1_rep	five_prime_UTR	21391777	21392658	.	-	.	Parent=Os05t0436950-00
Chr05	irgsp1_rep	five_prime_UTR	21391177	21391411	.	-	.	Parent=Os05t0436950-00
Chr05	irgsp1_rep	five_prime_UTR	21389639	21389920	.	-	.	Parent=Os05t0436950-00
Chr05	irgsp1_rep	five_prime_UTR	21389458	21389533	.	-	.	Parent=Os05t0436950-00
Chr05	irgsp1_rep	CDS	21389335	21389457	.	-	0	Parent=Os05t0436950-00
Chr05	irgsp1_rep	CDS	21388804	21389028	.	-	0	Parent=Os05t0436950-00
Chr05	irgsp1_rep	mRNA	21404691	21405479	.	+	.	ID=Os05t0437050-00;Name=Os05t0437050-00;Locus_id=Os05g0437050;CGSNL Gene Symbol=ERF105;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 105;Oryzabase Gene Symbol Synonym(s)=OsERF#105%2C OsERF105%2C AP2/EREBP#050%2C AP2/EREBP50;Oryzabase Gene Name Synonym(s)=ethylene response factor 105%2C APETALA2/ethylene-responsive element binding protein 50;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FJ62 (UniProt);Oryzabase=10603;TENOR=Os05t0437050-00
Chr05	irgsp1_rep	CDS	21404691	21405036	.	+	0	Parent=Os05t0437050-00
Chr05	irgsp1_rep	CDS	21405442	21405479	.	+	2	Parent=Os05t0437050-00
Chr05	irgsp1_rep	mRNA	21408346	21409032	.	+	.	ID=Os05t0437100-00;Name=Os05t0437100-00;Locus_id=Os05g0437100;CGSNL Gene Symbol=ERF105;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 105;Oryzabase Gene Symbol Synonym(s)=OsERF#105%2C OsERF105%2C AP2/EREBP#050%2C AP2/EREBP50;Oryzabase Gene Name Synonym(s)=ethylene response factor 105%2C APETALA2/ethylene-responsive element binding protein 50;Note=Pathogenesis-related transcriptional factor and ERF domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2Y518 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);Oryzabase=10603;TENOR=Os05t0437100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	21408346	21409032	.	+	0	Parent=Os05t0437100-00
Chr05	irgsp1_rep	mRNA	21410157	21414350	.	+	.	ID=Os05t0437200-01;Name=Os05t0437200-01;Locus_id=Os05g0437200;Note=Protein of unknown function DUF502 family protein.;Transcript_evidence=AK121867 (DDBJ%2C Best hit);ORF_evidence=B4FES4 (UniProt);InterPro=Protein of unknown function DUF502 (IPR007462);NIAS_FLcDNA=J033103I02;Expression=AK121867;TENOR=Os05t0437200-01;KEGG=Os05t0437200-01
Chr05	irgsp1_rep	five_prime_UTR	21410157	21410526	.	+	.	Parent=Os05t0437200-01
Chr05	irgsp1_rep	CDS	21410527	21410646	.	+	0	Parent=Os05t0437200-01
Chr05	irgsp1_rep	CDS	21411641	21411693	.	+	0	Parent=Os05t0437200-01
Chr05	irgsp1_rep	CDS	21411788	21411897	.	+	1	Parent=Os05t0437200-01
Chr05	irgsp1_rep	CDS	21412382	21412549	.	+	2	Parent=Os05t0437200-01
Chr05	irgsp1_rep	CDS	21412841	21412938	.	+	2	Parent=Os05t0437200-01
Chr05	irgsp1_rep	CDS	21413578	21413704	.	+	0	Parent=Os05t0437200-01
Chr05	irgsp1_rep	CDS	21413833	21413939	.	+	2	Parent=Os05t0437200-01
Chr05	irgsp1_rep	three_prime_UTR	21413940	21413948	.	+	.	Parent=Os05t0437200-01
Chr05	irgsp1_rep	three_prime_UTR	21414090	21414350	.	+	.	Parent=Os05t0437200-01
Chr05	irgsp1_rep	mRNA	21410336	21414350	.	+	.	ID=Os05t0437200-02;Name=Os05t0437200-02;Locus_id=Os05g0437200;Note=Protein of unknown function DUF502 family protein.;Transcript_evidence=AK059283 (DDBJ%2C Best hit);ORF_evidence=B4FES4 (UniProt);InterPro=Protein of unknown function DUF502 (IPR007462);NIAS_FLcDNA=001-025-D06;Expression=AK059283;TENOR=Os05t0437200-02;KEGG=Os05t0437200-02
Chr05	irgsp1_rep	five_prime_UTR	21410336	21410526	.	+	.	Parent=Os05t0437200-02
Chr05	irgsp1_rep	CDS	21410527	21410646	.	+	0	Parent=Os05t0437200-02
Chr05	irgsp1_rep	CDS	21411641	21411693	.	+	0	Parent=Os05t0437200-02
Chr05	irgsp1_rep	CDS	21411788	21411897	.	+	1	Parent=Os05t0437200-02
Chr05	irgsp1_rep	CDS	21412382	21412549	.	+	2	Parent=Os05t0437200-02
Chr05	irgsp1_rep	CDS	21412841	21412938	.	+	2	Parent=Os05t0437200-02
Chr05	irgsp1_rep	CDS	21413578	21413704	.	+	0	Parent=Os05t0437200-02
Chr05	irgsp1_rep	CDS	21413833	21413939	.	+	2	Parent=Os05t0437200-02
Chr05	irgsp1_rep	three_prime_UTR	21413940	21413948	.	+	.	Parent=Os05t0437200-02
Chr05	irgsp1_rep	three_prime_UTR	21414081	21414350	.	+	.	Parent=Os05t0437200-02
Chr05	irgsp1_rep	mRNA	21415028	21420739	.	-	.	ID=Os05t0437300-01;Name=Os05t0437300-01;Locus_id=Os05g0437300;Oryzabase Gene Symbol Synonym(s)=RBP-61;Oryzabase Gene Name Synonym(s)=RNA-binding RBP-61;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK102760 (DDBJ%2C Best hit);ORF_evidence=D8L9M8 (UniProt);GO=Biological Process: mRNA processing (GO:0006397),Cellular Component: nucleus (GO:0005634),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723);InterPro=RNA recognition motif domain (IPR000504),HnRNP-L/PTB/hephaestus splicing factor (IPR006536),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033107C19;Oryzabase=22091;Expression=AK102760;TENOR=Os05t0437300-01;KEGG=Os05t0437300-01
Chr05	irgsp1_rep	five_prime_UTR	21420498	21420739	.	-	.	Parent=Os05t0437300-01
Chr05	irgsp1_rep	five_prime_UTR	21420340	21420371	.	-	.	Parent=Os05t0437300-01
Chr05	irgsp1_rep	CDS	21420283	21420339	.	-	0	Parent=Os05t0437300-01
Chr05	irgsp1_rep	CDS	21420059	21420132	.	-	0	Parent=Os05t0437300-01
Chr05	irgsp1_rep	CDS	21419885	21419959	.	-	1	Parent=Os05t0437300-01
Chr05	irgsp1_rep	CDS	21419506	21419587	.	-	1	Parent=Os05t0437300-01
Chr05	irgsp1_rep	CDS	21418693	21418825	.	-	0	Parent=Os05t0437300-01
Chr05	irgsp1_rep	CDS	21417838	21417902	.	-	2	Parent=Os05t0437300-01
Chr05	irgsp1_rep	CDS	21417712	21417761	.	-	0	Parent=Os05t0437300-01
Chr05	irgsp1_rep	CDS	21417594	21417635	.	-	1	Parent=Os05t0437300-01
Chr05	irgsp1_rep	CDS	21417349	21417400	.	-	1	Parent=Os05t0437300-01
Chr05	irgsp1_rep	CDS	21417192	21417240	.	-	0	Parent=Os05t0437300-01
Chr05	irgsp1_rep	CDS	21417092	21417105	.	-	2	Parent=Os05t0437300-01
Chr05	irgsp1_rep	CDS	21416885	21416992	.	-	0	Parent=Os05t0437300-01
Chr05	irgsp1_rep	CDS	21415854	21415997	.	-	0	Parent=Os05t0437300-01
Chr05	irgsp1_rep	CDS	21415352	21415741	.	-	0	Parent=Os05t0437300-01
Chr05	irgsp1_rep	three_prime_UTR	21415028	21415351	.	-	.	Parent=Os05t0437300-01
Chr05	irgsp1_rep	mRNA	21425529	21425975	.	-	.	ID=Os05t0437401-00;Name=Os05t0437401-00;Locus_id=Os05g0437401;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8AYU0 (UniProt);TENOR=Os05t0437401-00
Chr05	irgsp1_rep	CDS	21425529	21425975	.	-	0	Parent=Os05t0437401-00
Chr05	irgsp1_rep	mRNA	21427773	21431587	.	-	.	ID=Os05t0437500-01;Name=Os05t0437500-01;Locus_id=Os05g0437500;Note=Yip1 domain containing protein.;Transcript_evidence=AK102974 (DDBJ%2C Best hit);ORF_evidence=D8L9M4 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Yip1 domain (IPR006977);NIAS_FLcDNA=J033115K22;Expression=AK102974;TENOR=Os05t0437500-01;KEGG=Os05t0437500-01
Chr05	irgsp1_rep	five_prime_UTR	21431494	21431587	.	-	.	Parent=Os05t0437500-01
Chr05	irgsp1_rep	CDS	21430990	21431493	.	-	0	Parent=Os05t0437500-01
Chr05	irgsp1_rep	CDS	21428290	21428364	.	-	0	Parent=Os05t0437500-01
Chr05	irgsp1_rep	CDS	21427926	21428186	.	-	0	Parent=Os05t0437500-01
Chr05	irgsp1_rep	three_prime_UTR	21427773	21427925	.	-	.	Parent=Os05t0437500-01
Chr05	irgsp1_rep	mRNA	21432457	21435612	.	+	.	ID=Os05t0437700-01;Name=Os05t0437700-01;Locus_id=Os05g0437700;CGSNL Gene Symbol=BZIP40;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 40;Oryzabase Gene Symbol Synonym(s)=OsbZIP40;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 40;Note=Similar to G-box-binding factor 4.;Transcript_evidence=AK120656 (DDBJ%2C Best hit);ORF_evidence=NP_001149687.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);NIAS_FLcDNA=J013158B06;Oryzabase=10125;Expression=AK120656;TENOR=Os05t0437700-01;KEGG=Os05t0437700-01
Chr05	irgsp1_rep	five_prime_UTR	21432457	21432676	.	+	.	Parent=Os05t0437700-01
Chr05	irgsp1_rep	CDS	21432677	21433300	.	+	0	Parent=Os05t0437700-01
Chr05	irgsp1_rep	CDS	21433423	21433494	.	+	0	Parent=Os05t0437700-01
Chr05	irgsp1_rep	CDS	21434383	21434430	.	+	0	Parent=Os05t0437700-01
Chr05	irgsp1_rep	three_prime_UTR	21434431	21435612	.	+	.	Parent=Os05t0437700-01
Chr05	irgsp1_rep	mRNA	21432697	21433302	.	-	.	ID=Os05t0437750-00;Name=Os05t0437750-00;Locus_id=Os05g0437750;Note=Hypothetical gene.;Transcript_evidence=EU954971 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0437750-00;KEGG=Os05t0437750-00
Chr05	irgsp1_rep	five_prime_UTR	21433301	21433302	.	-	.	Parent=Os05t0437750-00
Chr05	irgsp1_rep	CDS	21432992	21433300	.	-	0	Parent=Os05t0437750-00
Chr05	irgsp1_rep	three_prime_UTR	21432697	21432991	.	-	.	Parent=Os05t0437750-00
Chr05	irgsp1_rep	mRNA	21456352	21457121	.	-	.	ID=Os05t0437800-01;Name=Os05t0437800-01;Locus_id=Os05g0437800;Note=Conserved hypothetical protein.;Transcript_evidence=AK106328 (DDBJ%2C Best hit);ORF_evidence=Q75HX6 (UniProt);NIAS_FLcDNA=002-101-F04;Expression=AK106328;TENOR=Os05t0437800-01;KEGG=Os05t0437800-01
Chr05	irgsp1_rep	five_prime_UTR	21457120	21457121	.	-	.	Parent=Os05t0437800-01
Chr05	irgsp1_rep	CDS	21456760	21457119	.	-	0	Parent=Os05t0437800-01
Chr05	irgsp1_rep	three_prime_UTR	21456352	21456759	.	-	.	Parent=Os05t0437800-01
Chr05	irgsp1_rep	mRNA	21460347	21463248	.	-	.	ID=Os05t0437900-01;Name=Os05t0437900-01;Locus_id=Os05g0437900;Oryzabase Gene Symbol Synonym(s)=OsTLP1%2C OsTLP1a%2C OsTLP1b%2C OsTLP1c%2C OsTLP8%2C OsFbox259%2C Os_F0415;Oryzabase Gene Name Synonym(s)=tubby-like protein 1%2C tubby-like protein 8%2C F-box protein 259;Note=Tubby family protein.;Transcript_evidence=AK074017 (DDBJ%2C Best hit),AK069622 (DDBJ%2C Best hit),AK103583 (DDBJ%2C Best hit);ORF_evidence=Q75HX5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Tubby%2C C-terminal (IPR000007),F-box domain%2C cyclin-like (IPR001810),Tubby%2C C-terminal%2C conserved site (IPR018066),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033073D08,J023023F15,J033133A18;Oryzabase=14703;Expression=AK074017;TENOR=Os05t0437900-01;KEGG=Os05t0437900-01
Chr05	irgsp1_rep	five_prime_UTR	21463085	21463248	.	-	.	Parent=Os05t0437900-01
Chr05	irgsp1_rep	five_prime_UTR	21462485	21462675	.	-	.	Parent=Os05t0437900-01
Chr05	irgsp1_rep	CDS	21462119	21462484	.	-	0	Parent=Os05t0437900-01
Chr05	irgsp1_rep	CDS	21461880	21461967	.	-	0	Parent=Os05t0437900-01
Chr05	irgsp1_rep	CDS	21461499	21461631	.	-	2	Parent=Os05t0437900-01
Chr05	irgsp1_rep	CDS	21460658	21461408	.	-	1	Parent=Os05t0437900-01
Chr05	irgsp1_rep	three_prime_UTR	21460347	21460657	.	-	.	Parent=Os05t0437900-01
Chr05	irgsp1_rep	mRNA	21460295	21461323	.	-	.	ID=Os05t0437900-03;Name=Os05t0437900-03;Locus_id=Os05g0437900;Oryzabase Gene Symbol Synonym(s)=OsTLP1%2C OsTLP1a%2C OsTLP1b%2C OsTLP1c%2C OsTLP8%2C OsFbox259%2C Os_F0415;Oryzabase Gene Name Synonym(s)=tubby-like protein 1%2C tubby-like protein 8%2C F-box protein 259;Note=Similar to Tubby-like F-box protein 8.;Transcript_evidence=AK059586 (DDBJ%2C Best hit);ORF_evidence=Q75HX5 (UniProt);InterPro=Tubby%2C C-terminal (IPR000007),Tubby%2C C-terminal%2C conserved site (IPR018066);NIAS_FLcDNA=001-030-B11;Oryzabase=14703;Expression=AK059586;TENOR=Os05t0437900-03;KEGG=Os05t0437900-03
Chr05	irgsp1_rep	CDS	21460658	21461323	.	-	0	Parent=Os05t0437900-03
Chr05	irgsp1_rep	three_prime_UTR	21460295	21460657	.	-	.	Parent=Os05t0437900-03
Chr05	irgsp1_rep	mRNA	21482321	21485134	.	+	.	ID=Os05t0438201-00;Name=Os05t0438201-00;Locus_id=Os05g0438201;Note=Conserved hypothetical protein.;Transcript_evidence=AK241146 (DDBJ%2C Secondary hit);ORF_evidence=Q75HX4 (UniProt);TENOR=Os05t0438201-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	21482321	21482451	.	+	.	Parent=Os05t0438201-00
Chr05	irgsp1_rep	five_prime_UTR	21482716	21482917	.	+	.	Parent=Os05t0438201-00
Chr05	irgsp1_rep	five_prime_UTR	21483020	21483091	.	+	.	Parent=Os05t0438201-00
Chr05	irgsp1_rep	five_prime_UTR	21483113	21483385	.	+	.	Parent=Os05t0438201-00
Chr05	irgsp1_rep	five_prime_UTR	21483462	21483590	.	+	.	Parent=Os05t0438201-00
Chr05	irgsp1_rep	five_prime_UTR	21483663	21484047	.	+	.	Parent=Os05t0438201-00
Chr05	irgsp1_rep	CDS	21484048	21484125	.	+	0	Parent=Os05t0438201-00
Chr05	irgsp1_rep	CDS	21484280	21484330	.	+	0	Parent=Os05t0438201-00
Chr05	irgsp1_rep	three_prime_UTR	21484331	21484378	.	+	.	Parent=Os05t0438201-00
Chr05	irgsp1_rep	three_prime_UTR	21484616	21485134	.	+	.	Parent=Os05t0438201-00
Chr05	irgsp1_rep	mRNA	21491943	21493609	.	+	.	ID=Os05t0438500-01;Name=Os05t0438500-01;Locus_id=Os05g0438500;Oryzabase Gene Name Synonym(s)=sPPase%2C Soluble Inorganic Pyrophosphatase;Note=Similar to Soluble inorganic pyrophosphatase (EC 3.6.1.1) (Pyrophosphate phospho- hydrolase) (PPase).;Transcript_evidence=AK059951 (DDBJ%2C Best hit);ORF_evidence=NP_001104889.1 (RefSeq);GO=Biological Process: phosphate-containing compound metabolic process (GO:0006796),Cellular Component: cytoplasm (GO:0005737),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: inorganic diphosphatase activity (GO:0004427);InterPro=Inorganic pyrophosphatase (IPR008162);NIAS_FLcDNA=006-211-B08;Oryzabase=22996;Expression=AK059951;TENOR=Os05t0438500-01;KEGG=Os05t0438500-01 (EC:3.6.1.1)
Chr05	irgsp1_rep	five_prime_UTR	21491943	21492031	.	+	.	Parent=Os05t0438500-01
Chr05	irgsp1_rep	CDS	21492032	21492220	.	+	0	Parent=Os05t0438500-01
Chr05	irgsp1_rep	CDS	21492350	21492415	.	+	0	Parent=Os05t0438500-01
Chr05	irgsp1_rep	CDS	21492512	21492619	.	+	0	Parent=Os05t0438500-01
Chr05	irgsp1_rep	CDS	21492715	21492780	.	+	0	Parent=Os05t0438500-01
Chr05	irgsp1_rep	CDS	21492908	21493028	.	+	0	Parent=Os05t0438500-01
Chr05	irgsp1_rep	CDS	21493126	21493207	.	+	2	Parent=Os05t0438500-01
Chr05	irgsp1_rep	CDS	21493298	21493340	.	+	1	Parent=Os05t0438500-01
Chr05	irgsp1_rep	three_prime_UTR	21493341	21493609	.	+	.	Parent=Os05t0438500-01
Chr05	irgsp1_rep	mRNA	21492113	21493208	.	-	.	ID=Os05t0438550-00;Name=Os05t0438550-00;Locus_id=Os05g0438550;Note=Non-protein coding transcript.;Transcript_evidence=BT019269 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0438550-00
Chr05	irgsp1_rep	exon	21493128	21493208	.	-	.	Parent=Os05t0438550-00
Chr05	irgsp1_rep	exon	21492905	21493026	.	-	.	Parent=Os05t0438550-00
Chr05	irgsp1_rep	exon	21492695	21492777	.	-	.	Parent=Os05t0438550-00
Chr05	irgsp1_rep	exon	21492510	21492604	.	-	.	Parent=Os05t0438550-00
Chr05	irgsp1_rep	exon	21492364	21492417	.	-	.	Parent=Os05t0438550-00
Chr05	irgsp1_rep	exon	21492113	21492233	.	-	.	Parent=Os05t0438550-00
Chr05	irgsp1_rep	mRNA	21493974	21496836	.	-	.	ID=Os05t0438600-01;Name=Os05t0438600-01;Locus_id=Os05g0438600;CGSNL Gene Symbol=CFBP2;CGSNL Gene Name=CYTOSOLIC FRUCTOSE-1%2C6-BIPHOSPHATE 2;Oryzabase Gene Symbol Synonym(s)=OscFBP2%2C cFBP2;Oryzabase Gene Name Synonym(s)=FBPase%2C " fructose-1%2C 6-bisphosphatase"%2C "cytosolic fructose-1%2C 6-biphosphate 2"%2C "cytosolic fructose 1%2C 6-bisphosphatase2";Note=Fructose-1%2C6-bisphosphatase class 1/Sedoheputulose-1%2C7-bisphosphatase domain containing protein.;Transcript_evidence=AK243682 (DDBJ%2C Best hit);ORF_evidence=XP_002961367.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: phosphoric ester hydrolase activity (GO:0042578);InterPro=Fructose-1%2C6-bisphosphatase class 1/Sedoheputulose-1%2C7-bisphosphatase (IPR000146);NIAS_FLcDNA=J100090J12;Oryzabase=21999;TENOR=Os05t0438600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	21496206	21496836	.	-	.	Parent=Os05t0438600-01
Chr05	irgsp1_rep	five_prime_UTR	21495597	21496114	.	-	.	Parent=Os05t0438600-01
Chr05	irgsp1_rep	CDS	21495447	21495596	.	-	0	Parent=Os05t0438600-01
Chr05	irgsp1_rep	CDS	21495141	21495362	.	-	0	Parent=Os05t0438600-01
Chr05	irgsp1_rep	three_prime_UTR	21494509	21495140	.	-	.	Parent=Os05t0438600-01
Chr05	irgsp1_rep	three_prime_UTR	21493974	21494236	.	-	.	Parent=Os05t0438600-01
Chr05	irgsp1_rep	mRNA	21493970	21496674	.	-	.	ID=Os05t0438600-02;Name=Os05t0438600-02;Locus_id=Os05g0438600;RAP-DB Gene Symbol Synonym(s)=OscFBP2;RAP-DB Gene Name Synonym(s)=cytosolic fructose 1%2C6-bisphosphatase2;CGSNL Gene Symbol=CFBP2;CGSNL Gene Name=CYTOSOLIC FRUCTOSE-1%2C6-BIPHOSPHATE 2;Oryzabase Gene Symbol Synonym(s)=OscFBP2%2C cFBP2;Oryzabase Gene Name Synonym(s)=FBPase%2C " fructose-1%2C 6-bisphosphatase"%2C "cytosolic fructose-1%2C 6-biphosphate 2"%2C "cytosolic fructose 1%2C 6-bisphosphatase2";Note=Fructose-1%2C6-bisphosphatase%2C Cytosolic sucrose synthesis%2C Tiller growth;Transcript_evidence=DQ865191 (Jinmi);ORF_evidence=A7J2C3;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: phosphatase activity (GO:0016791),Molecular Function: fructose 1%2C6-bisphosphate 1-phosphatase activity (GO:0042132),Molecular Function: phosphoric ester hydrolase activity (GO:0042578);InterPro=Fructose-1%2C6-bisphosphatase class 1 (IPR000146),Fructose-1%2C6-bisphosphatase (IPR028343),Fructose-1-6-bisphosphatase class I%2C N-terminal (IPR033391),Fructose-1%2C6-bisphosphatase%2C active site (IPR020548);Manual Curation=December 26%2C 2018;Literature_PMID=30578468;Oryzabase=21999
Chr05	irgsp1_rep	five_prime_UTR	21496628	21496674	.	-	.	Parent=Os05t0438600-02
Chr05	irgsp1_rep	CDS	21496421	21496627	.	-	0	Parent=Os05t0438600-02
Chr05	irgsp1_rep	CDS	21496206	21496280	.	-	0	Parent=Os05t0438600-02
Chr05	irgsp1_rep	CDS	21496053	21496114	.	-	0	Parent=Os05t0438600-02
Chr05	irgsp1_rep	CDS	21495858	21495924	.	-	1	Parent=Os05t0438600-02
Chr05	irgsp1_rep	CDS	21495447	21495560	.	-	0	Parent=Os05t0438600-02
Chr05	irgsp1_rep	CDS	21495276	21495362	.	-	0	Parent=Os05t0438600-02
Chr05	irgsp1_rep	CDS	21495101	21495171	.	-	0	Parent=Os05t0438600-02
Chr05	irgsp1_rep	CDS	21494952	21495017	.	-	1	Parent=Os05t0438600-02
Chr05	irgsp1_rep	CDS	21494664	21494750	.	-	1	Parent=Os05t0438600-02
Chr05	irgsp1_rep	CDS	21494509	21494584	.	-	1	Parent=Os05t0438600-02
Chr05	irgsp1_rep	CDS	21494123	21494236	.	-	0	Parent=Os05t0438600-02
Chr05	irgsp1_rep	three_prime_UTR	21493970	21494122	.	-	.	Parent=Os05t0438600-02
Chr05	irgsp1_rep	mRNA	21499449	21500179	.	-	.	ID=Os05t0438700-01;Name=Os05t0438700-01;Locus_id=Os05g0438700;Note=Similar to Histone H3.;Transcript_evidence=AK120955 (DDBJ%2C Best hit);ORF_evidence=B9FRM3 (UniProt);NIAS_FLcDNA=J023039F20;TENOR=Os05t0438700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	21500178	21500179	.	-	.	Parent=Os05t0438700-01
Chr05	irgsp1_rep	CDS	21499575	21500177	.	-	0	Parent=Os05t0438700-01
Chr05	irgsp1_rep	three_prime_UTR	21499449	21499574	.	-	.	Parent=Os05t0438700-01
Chr05	irgsp1_rep	mRNA	21500616	21504228	.	-	.	ID=Os05t0438800-01;Name=Os05t0438800-01;Locus_id=Os05g0438800;Note=Similar to Actin 1.;Transcript_evidence=AK071586 (DDBJ%2C Best hit);ORF_evidence=NP_001148651.1 (RefSeq);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Actin-like (IPR004000),Actin%2C conserved site (IPR004001),Actin/actin-like conserved site (IPR020902);NIAS_FLcDNA=J023104C20;Expression=AK071586;TENOR=Os05t0438800-01;KEGG=Os05t0438800-01
Chr05	irgsp1_rep	five_prime_UTR	21504062	21504228	.	-	.	Parent=Os05t0438800-01
Chr05	irgsp1_rep	five_prime_UTR	21502951	21502962	.	-	.	Parent=Os05t0438800-01
Chr05	irgsp1_rep	CDS	21502894	21502950	.	-	0	Parent=Os05t0438800-01
Chr05	irgsp1_rep	CDS	21502419	21502812	.	-	0	Parent=Os05t0438800-01
Chr05	irgsp1_rep	CDS	21501728	21502341	.	-	2	Parent=Os05t0438800-01
Chr05	irgsp1_rep	CDS	21501123	21501188	.	-	0	Parent=Os05t0438800-01
Chr05	irgsp1_rep	three_prime_UTR	21500616	21501122	.	-	.	Parent=Os05t0438800-01
Chr05	irgsp1_rep	mRNA	21509426	21510614	.	-	.	ID=Os05t0439000-01;Name=Os05t0439000-01;Locus_id=Os05g0439000;Note=Similar to RING-H2 finger protein ATL1O (RING-H2 finger protein ATL11).;Transcript_evidence=AK108250 (DDBJ%2C Best hit);ORF_evidence=B9FJ69 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=002-140-H11;Expression=AK108250;TENOR=Os05t0439000-01;KEGG=Os05t0439000-01
Chr05	irgsp1_rep	five_prime_UTR	21510526	21510614	.	-	.	Parent=Os05t0439000-01
Chr05	irgsp1_rep	CDS	21509863	21510525	.	-	0	Parent=Os05t0439000-01
Chr05	irgsp1_rep	three_prime_UTR	21509426	21509862	.	-	.	Parent=Os05t0439000-01
Chr05	irgsp1_rep	mRNA	21511930	21512541	.	+	.	ID=Os05t0439100-01;Name=Os05t0439100-01;Locus_id=Os05g0439100;Note=Similar to Transcription factor MYC7E (Fragment).;Transcript_evidence=AK099506 (DDBJ%2C Best hit);ORF_evidence=Q653E7 (UniProt);NIAS_FLcDNA=J013029B16;Expression=AK099506;TENOR=Os05t0439100-01;KEGG=Os05t0439100-01
Chr05	irgsp1_rep	five_prime_UTR	21511930	21511931	.	+	.	Parent=Os05t0439100-01
Chr05	irgsp1_rep	CDS	21511932	21512252	.	+	0	Parent=Os05t0439100-01
Chr05	irgsp1_rep	three_prime_UTR	21512253	21512541	.	+	.	Parent=Os05t0439100-01
Chr05	irgsp1_rep	mRNA	21514406	21515207	.	+	.	ID=Os05t0439200-01;Name=Os05t0439200-01;Locus_id=Os05g0439200;Note=Hypothetical protein.;Transcript_evidence=AK069208 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023009C22;TENOR=Os05t0439200-01
Chr05	irgsp1_rep	CDS	21514406	21514987	.	+	0	Parent=Os05t0439200-01
Chr05	irgsp1_rep	three_prime_UTR	21514988	21515207	.	+	.	Parent=Os05t0439200-01
Chr05	irgsp1_rep	mRNA	21518063	21519882	.	-	.	ID=Os05t0439300-01;Name=Os05t0439300-01;Locus_id=Os05g0439300;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK243366 (DDBJ%2C Best hit);ORF_evidence=XP_002884209.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J100062A03;TENOR=Os05t0439300-01;KEGG=Os05t0439300-01
Chr05	irgsp1_rep	five_prime_UTR	21519778	21519882	.	-	.	Parent=Os05t0439300-01
Chr05	irgsp1_rep	CDS	21518122	21519777	.	-	0	Parent=Os05t0439300-01
Chr05	irgsp1_rep	three_prime_UTR	21518063	21518121	.	-	.	Parent=Os05t0439300-01
Chr05	irgsp1_rep	mRNA	21525171	21526731	.	+	.	ID=Os05t0439400-01;Name=Os05t0439400-01;Locus_id=Os05g0439400;Oryzabase Gene Symbol Synonym(s)=OsPUB44;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 44%2C U-box protein 44;Note=Similar to Arm repeat containing protein.;Transcript_evidence=AK121082 (DDBJ%2C Best hit);ORF_evidence=A2Y538 (UniProt);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842);InterPro=U box domain (IPR003613),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J023063H22;Oryzabase=17835;Expression=AK121082;TENOR=Os05t0439400-01;KEGG=Os05t0439400-01
Chr05	irgsp1_rep	five_prime_UTR	21525171	21525207	.	+	.	Parent=Os05t0439400-01
Chr05	irgsp1_rep	CDS	21525208	21526566	.	+	0	Parent=Os05t0439400-01
Chr05	irgsp1_rep	three_prime_UTR	21526567	21526731	.	+	.	Parent=Os05t0439400-01
Chr05	irgsp1_rep	mRNA	21529083	21529742	.	-	.	ID=Os05t0439750-00;Name=Os05t0439750-00;Locus_id=Os05g0439750;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8AYU3 (UniProt);TENOR=Os05t0439750-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	21529083	21529742	.	-	0	Parent=Os05t0439750-00
Chr05	irgsp1_rep	mRNA	21555553	21556609	.	+	.	ID=Os05t0440000-00;Name=Os05t0440000-00;Locus_id=Os05g0440000;CGSNL Gene Symbol=DOF29;CGSNL Gene Name=DNA BINDING WITH ONE FINGER 29;Oryzabase Gene Symbol Synonym(s)=OsDof29%2C Dof29%2C OsDof-29;Oryzabase Gene Name Synonym(s)=Dof zinc factor 29%2C Dof transcription factor 29;Note=Zinc finger%2C Dof-type family protein.;Transcript_evidence=AK373527 (DDBJ);ORF_evidence=NP_001150329.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C Dof-type (IPR003851);Oryzabase=8817;TENOR=Os05t0440000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	21555553	21555553	.	+	.	Parent=Os05t0440000-00
Chr05	irgsp1_rep	CDS	21555554	21556537	.	+	0	Parent=Os05t0440000-00
Chr05	irgsp1_rep	three_prime_UTR	21556538	21556609	.	+	.	Parent=Os05t0440000-00
Chr05	irgsp1_rep	mRNA	21557580	21560040	.	-	.	ID=Os05t0440100-01;Name=Os05t0440100-01;Locus_id=Os05g0440100;Note=Similar to (RAP Annotation release2) Histone deacetylase superfamily protein.;Transcript_evidence=AK059585 (DDBJ%2C Best hit);ORF_evidence=B7ETM3 (UniProt);InterPro=NC (IPR007053);NIAS_FLcDNA=001-030-B09;Expression=AK059585;TENOR=Os05t0440100-01;KEGG=Os05t0440100-01
Chr05	irgsp1_rep	five_prime_UTR	21559893	21560040	.	-	.	Parent=Os05t0440100-01
Chr05	irgsp1_rep	CDS	21559873	21559892	.	-	0	Parent=Os05t0440100-01
Chr05	irgsp1_rep	CDS	21559637	21559710	.	-	1	Parent=Os05t0440100-01
Chr05	irgsp1_rep	CDS	21557816	21558546	.	-	2	Parent=Os05t0440100-01
Chr05	irgsp1_rep	three_prime_UTR	21557580	21557815	.	-	.	Parent=Os05t0440100-01
Chr05	irgsp1_rep	mRNA	21557366	21559967	.	-	.	ID=Os05t0440100-02;Name=Os05t0440100-02;Locus_id=Os05g0440100;Note=Similar to (RAP Annotation release2) Histone deacetylase superfamily protein.;Transcript_evidence=AK072962 (DDBJ%2C Best hit);ORF_evidence=B7ETM3 (UniProt);InterPro=NC (IPR007053);NIAS_FLcDNA=J023149P14;Expression=AK072962;TENOR=Os05t0440100-02;KEGG=Os05t0440100-02
Chr05	irgsp1_rep	five_prime_UTR	21559893	21559967	.	-	.	Parent=Os05t0440100-02
Chr05	irgsp1_rep	CDS	21559873	21559892	.	-	0	Parent=Os05t0440100-02
Chr05	irgsp1_rep	CDS	21559637	21559710	.	-	1	Parent=Os05t0440100-02
Chr05	irgsp1_rep	CDS	21557816	21558546	.	-	2	Parent=Os05t0440100-02
Chr05	irgsp1_rep	three_prime_UTR	21557366	21557815	.	-	.	Parent=Os05t0440100-02
Chr05	irgsp1_rep	mRNA	21557692	21559712	.	+	.	ID=Os05t0440150-00;Name=Os05t0440150-00;Locus_id=Os05g0440150;Note=Hypothetical gene.;Transcript_evidence=BT017572 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0440150-00;KEGG=Os05t0440150-00
Chr05	irgsp1_rep	five_prime_UTR	21557692	21557791	.	+	.	Parent=Os05t0440150-00
Chr05	irgsp1_rep	CDS	21557792	21558043	.	+	0	Parent=Os05t0440150-00
Chr05	irgsp1_rep	three_prime_UTR	21558044	21558562	.	+	.	Parent=Os05t0440150-00
Chr05	irgsp1_rep	three_prime_UTR	21559651	21559712	.	+	.	Parent=Os05t0440150-00
Chr05	irgsp1_rep	mRNA	21560492	21563665	.	+	.	ID=Os05t0440201-01;Name=Os05t0440201-01;Locus_id=Os05g0440201;Note=Hypothetical gene.;Transcript_evidence=AK288379 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090026K24;TENOR=Os05t0440201-01
Chr05	irgsp1_rep	five_prime_UTR	21560492	21563355	.	+	.	Parent=Os05t0440201-01
Chr05	irgsp1_rep	CDS	21563356	21563665	.	+	0	Parent=Os05t0440201-01
Chr05	irgsp1_rep	mRNA	21561375	21564322	.	-	.	ID=Os05t0440250-01;Name=Os05t0440250-01;Locus_id=Os05g0440250;Note=Histone deacetylase superfamily protein.;Transcript_evidence=AK073094 (DDBJ%2C Best hit);ORF_evidence=XP_002313479.1 (RefSeq);InterPro=Histone deacetylase superfamily (IPR000286),Histone deacetylase domain (IPR023801);NIAS_FLcDNA=J033011G24;Expression=AK073094;TENOR=Os05t0440250-01;KEGG=Os05t0440250-01 (EC:3.5.1.98)
Chr05	irgsp1_rep	five_prime_UTR	21564222	21564322	.	-	.	Parent=Os05t0440250-01
Chr05	irgsp1_rep	CDS	21563927	21564221	.	-	0	Parent=Os05t0440250-01
Chr05	irgsp1_rep	CDS	21563165	21563745	.	-	2	Parent=Os05t0440250-01
Chr05	irgsp1_rep	CDS	21562265	21562567	.	-	0	Parent=Os05t0440250-01
Chr05	irgsp1_rep	three_prime_UTR	21561375	21562264	.	-	.	Parent=Os05t0440250-01
Chr05	irgsp1_rep	mRNA	21567352	21571809	.	-	.	ID=Os05t0440300-01;Name=Os05t0440300-01;Locus_id=Os05g0440300;Note=Similar to S1 self-incompatibility locus-linked G221 protein (Fragment).;Transcript_evidence=AK068179 (DDBJ%2C Best hit);ORF_evidence=XP_002313479.1 (RefSeq);InterPro=Histone deacetylase superfamily (IPR000286),Histone deacetylase domain (IPR023801);NIAS_FLcDNA=J013132M17;Expression=AK068179;TENOR=Os05t0440300-01;KEGG=Os05t0440300-01 (EC:3.5.1.98)
Chr05	irgsp1_rep	five_prime_UTR	21571807	21571809	.	-	.	Parent=Os05t0440300-01
Chr05	irgsp1_rep	CDS	21571719	21571806	.	-	0	Parent=Os05t0440300-01
Chr05	irgsp1_rep	CDS	21571390	21571601	.	-	2	Parent=Os05t0440300-01
Chr05	irgsp1_rep	CDS	21568500	21569084	.	-	0	Parent=Os05t0440300-01
Chr05	irgsp1_rep	CDS	21567629	21567931	.	-	0	Parent=Os05t0440300-01
Chr05	irgsp1_rep	three_prime_UTR	21567352	21567628	.	-	.	Parent=Os05t0440300-01
Chr05	irgsp1_rep	mRNA	21569860	21570923	.	+	.	ID=Os05t0440466-00;Name=Os05t0440466-00;Locus_id=Os05g0440466;Note=Hypothetical protein.;Transcript_evidence=AK373806 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0440466-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	21569860	21569861	.	+	.	Parent=Os05t0440466-00
Chr05	irgsp1_rep	CDS	21569862	21569950	.	+	0	Parent=Os05t0440466-00
Chr05	irgsp1_rep	CDS	21570765	21570923	.	+	1	Parent=Os05t0440466-00
Chr05	irgsp1_rep	mRNA	21570249	21570913	.	-	.	ID=Os05t0440632-00;Name=Os05t0440632-00;Locus_id=Os05g0440632;Note=Similar to Histone deacetylase superfamily.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2HSH7 (UniProt);InterPro=Histone deacetylase superfamily (IPR000286),Histone deacetylase domain (IPR023801);TENOR=Os05t0440632-00;KEGG=Os05t0440632-00
Chr05	irgsp1_rep	CDS	21570613	21570913	.	-	0	Parent=Os05t0440632-00
Chr05	irgsp1_rep	CDS	21570249	21570382	.	-	2	Parent=Os05t0440632-00
Chr05	irgsp1_rep	mRNA	21587817	21593415	.	+	.	ID=Os05t0440800-01;Name=Os05t0440800-01;Locus_id=Os05g0440800;Oryzabase Gene Symbol Synonym(s)=OsNek4;Oryzabase Gene Name Synonym(s)=NIMA-related kinase 4;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK073901 (DDBJ%2C Best hit);ORF_evidence=Q60DG4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033071K16;Oryzabase=9928;Expression=AK073901;TENOR=Os05t0440800-01;KEGG=Os05t0440800-01 (EC:2.7.11.1)
Chr05	irgsp1_rep	five_prime_UTR	21587817	21587964	.	+	.	Parent=Os05t0440800-01
Chr05	irgsp1_rep	CDS	21587965	21588062	.	+	0	Parent=Os05t0440800-01
Chr05	irgsp1_rep	CDS	21588199	21588265	.	+	1	Parent=Os05t0440800-01
Chr05	irgsp1_rep	CDS	21588372	21588437	.	+	0	Parent=Os05t0440800-01
Chr05	irgsp1_rep	CDS	21588514	21588560	.	+	0	Parent=Os05t0440800-01
Chr05	irgsp1_rep	CDS	21588644	21588689	.	+	1	Parent=Os05t0440800-01
Chr05	irgsp1_rep	CDS	21588773	21588853	.	+	0	Parent=Os05t0440800-01
Chr05	irgsp1_rep	CDS	21588927	21588969	.	+	0	Parent=Os05t0440800-01
Chr05	irgsp1_rep	CDS	21589058	21589107	.	+	2	Parent=Os05t0440800-01
Chr05	irgsp1_rep	CDS	21589408	21589489	.	+	0	Parent=Os05t0440800-01
Chr05	irgsp1_rep	CDS	21589573	21589622	.	+	2	Parent=Os05t0440800-01
Chr05	irgsp1_rep	CDS	21590631	21590704	.	+	0	Parent=Os05t0440800-01
Chr05	irgsp1_rep	CDS	21590928	21590979	.	+	1	Parent=Os05t0440800-01
Chr05	irgsp1_rep	CDS	21591057	21591716	.	+	0	Parent=Os05t0440800-01
Chr05	irgsp1_rep	CDS	21591798	21593213	.	+	0	Parent=Os05t0440800-01
Chr05	irgsp1_rep	three_prime_UTR	21593214	21593415	.	+	.	Parent=Os05t0440800-01
Chr05	irgsp1_rep	mRNA	21595885	21596625	.	+	.	ID=Os05t0440900-00;Name=Os05t0440900-00;Locus_id=Os05g0440900;Oryzabase Gene Symbol Synonym(s)=OsOFP23%2C OsOFP20;Oryzabase Gene Name Synonym(s)=OVATE family protein 23%2C ovate family protein 20%2C OVATE-domain containing protein 20;Note=Protein of unknown function DUF623%2C plant domain containing protein.;Transcript_evidence=FP092578 (DDBJ);ORF_evidence=B6T2M8 (UniProt);InterPro=Domain of unknown function DUF623 (IPR006458);Oryzabase=18319;TENOR=Os05t0440900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	21595885	21596580	.	+	0	Parent=Os05t0440900-00
Chr05	irgsp1_rep	three_prime_UTR	21596581	21596625	.	+	.	Parent=Os05t0440900-00
Chr05	irgsp1_rep	mRNA	21610392	21611511	.	-	.	ID=Os05t0441400-01;Name=Os05t0441400-01;Locus_id=Os05g0441400;Oryzabase Gene Symbol Synonym(s)=OsOFP14%2C OsOFP21;Oryzabase Gene Name Synonym(s)=OVATE family protein 14%2C ovate family protein 21%2C OVATE-domain containing protein 21;Note=Protein of unknown function DUF623%2C plant domain containing protein.;Transcript_evidence=AK108756 (DDBJ%2C Best hit);ORF_evidence=NP_001152486.1 (RefSeq);InterPro=Domain of unknown function DUF623 (IPR006458);NIAS_FLcDNA=002-150-F12;Oryzabase=18310;Expression=AK108756;TENOR=Os05t0441400-01;KEGG=Os05t0441400-01
Chr05	irgsp1_rep	five_prime_UTR	21611419	21611511	.	-	.	Parent=Os05t0441400-01
Chr05	irgsp1_rep	CDS	21610651	21611418	.	-	0	Parent=Os05t0441400-01
Chr05	irgsp1_rep	three_prime_UTR	21610392	21610650	.	-	.	Parent=Os05t0441400-01
Chr05	irgsp1_rep	mRNA	21613630	21616111	.	+	.	ID=Os05t0441500-01;Name=Os05t0441500-01;Locus_id=Os05g0441500;Note=Conserved hypothetical protein.;Transcript_evidence=AK065927 (DDBJ%2C Best hit);ORF_evidence=B8AYQ3 (UniProt);NIAS_FLcDNA=J013045I15;TENOR=Os05t0441500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	21613630	21613678	.	+	.	Parent=Os05t0441500-01
Chr05	irgsp1_rep	CDS	21613679	21613939	.	+	0	Parent=Os05t0441500-01
Chr05	irgsp1_rep	three_prime_UTR	21613940	21614014	.	+	.	Parent=Os05t0441500-01
Chr05	irgsp1_rep	three_prime_UTR	21614420	21615475	.	+	.	Parent=Os05t0441500-01
Chr05	irgsp1_rep	three_prime_UTR	21615868	21616111	.	+	.	Parent=Os05t0441500-01
Chr05	irgsp1_rep	mRNA	21613710	21614955	.	+	.	ID=Os05t0441500-02;Name=Os05t0441500-02;Locus_id=Os05g0441500;Note=Conserved hypothetical protein.;Transcript_evidence=AK120434 (DDBJ%2C Best hit);ORF_evidence=B8AYQ3 (UniProt);NIAS_FLcDNA=J013097F13;TENOR=Os05t0441500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	21613710	21613711	.	+	.	Parent=Os05t0441500-02
Chr05	irgsp1_rep	CDS	21613712	21613939	.	+	0	Parent=Os05t0441500-02
Chr05	irgsp1_rep	three_prime_UTR	21613940	21614014	.	+	.	Parent=Os05t0441500-02
Chr05	irgsp1_rep	three_prime_UTR	21614420	21614955	.	+	.	Parent=Os05t0441500-02
Chr05	irgsp1_rep	mRNA	21623903	21624397	.	+	.	ID=Os05t0441750-00;Name=Os05t0441750-00;Locus_id=Os05g0441750;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6F2M1 (UniProt);TENOR=Os05t0441750-00
Chr05	irgsp1_rep	CDS	21623903	21624397	.	+	0	Parent=Os05t0441750-00
Chr05	irgsp1_rep	mRNA	21640740	21641648	.	-	.	ID=Os05t0442000-00;Name=Os05t0442000-00;Locus_id=Os05g0442000;Note=Hypothetical conserved gene.;Transcript_evidence=EU974877 (DDBJ);ORF_evidence=Q01LE9 (UniProt);TENOR=Os05t0442000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	21641633	21641648	.	-	.	Parent=Os05t0442000-00
Chr05	irgsp1_rep	CDS	21641234	21641632	.	-	0	Parent=Os05t0442000-00
Chr05	irgsp1_rep	three_prime_UTR	21641154	21641233	.	-	.	Parent=Os05t0442000-00
Chr05	irgsp1_rep	three_prime_UTR	21640740	21641093	.	-	.	Parent=Os05t0442000-00
Chr05	irgsp1_rep	mRNA	21654183	21655380	.	-	.	ID=Os05t0442400-01;Name=Os05t0442400-01;Locus_id=Os05g0442400;RAP-DB Gene Symbol Synonym(s)=MID1%2C OsMYB-1;RAP-DB Gene Name Synonym(s)=MYB Important for Drought Response1%2C Myb-like DNA-binding domain containing protein 1;Oryzabase Gene Symbol Synonym(s)=OsMYB-1%2C MYB-1%2C MYB1%2C OsARM1%2C ARM1;Oryzabase Gene Name Synonym(s)=Myb-like DNA-binding domain containing protein 1%2C ARSENITE-RESPONSIVE MYB1;Note=R-R-type MYB-like transcription factor%2C Response to drought stress during reproductive development;Transcript_evidence=AK107134;ORF_evidence=Q6F2M6;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeodomain-like (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930),Myb domain%2C plants (IPR006447);NIAS_FLcDNA=002-124-C08;Manual Curation=November 17%2C 2016;Literature_PMID=27337541;Oryzabase=12480;Expression=AK107134;TENOR=Os05t0442400-01;KEGG=Os05t0442400-01
Chr05	irgsp1_rep	five_prime_UTR	21655269	21655380	.	-	.	Parent=Os05t0442400-01
Chr05	irgsp1_rep	CDS	21654907	21655268	.	-	0	Parent=Os05t0442400-01
Chr05	irgsp1_rep	CDS	21654452	21654638	.	-	1	Parent=Os05t0442400-01
Chr05	irgsp1_rep	three_prime_UTR	21654183	21654451	.	-	.	Parent=Os05t0442400-01
Chr05	irgsp1_rep	mRNA	21657847	21661906	.	-	.	ID=Os05t0442550-01;Name=Os05t0442550-01;Locus_id=Os05g0442550;Note=Similar to H0801D08.16 protein.;Transcript_evidence=AK288780 (DDBJ%2C Best hit);ORF_evidence=Q259D6 (UniProt);NIAS_FLcDNA=J090069A13;TENOR=Os05t0442550-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	21661897	21661906	.	-	.	Parent=Os05t0442550-01
Chr05	irgsp1_rep	CDS	21661663	21661896	.	-	0	Parent=Os05t0442550-01
Chr05	irgsp1_rep	three_prime_UTR	21657847	21661662	.	-	.	Parent=Os05t0442550-01
Chr05	irgsp1_rep	mRNA	21668193	21669728	.	-	.	ID=Os05t0442700-01;Name=Os05t0442700-01;Locus_id=Os05g0442700;CGSNL Gene Symbol=NAC12;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 12;Oryzabase Gene Symbol Synonym(s)=ONAC012%2C ONAC12;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 012%2C NAC domain-containing protein 12;Note=No apical meristem (NAM) protein domain containing protein.;Transcript_evidence=AK063703 (DDBJ%2C Best hit);ORF_evidence=XP_002336754.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=001-119-G11;Oryzabase=11462;Expression=AK063703;TENOR=Os05t0442700-01;KEGG=Os05t0442700-01
Chr05	irgsp1_rep	five_prime_UTR	21669615	21669728	.	-	.	Parent=Os05t0442700-01
Chr05	irgsp1_rep	CDS	21669455	21669614	.	-	0	Parent=Os05t0442700-01
Chr05	irgsp1_rep	CDS	21669022	21669332	.	-	2	Parent=Os05t0442700-01
Chr05	irgsp1_rep	CDS	21668404	21668757	.	-	0	Parent=Os05t0442700-01
Chr05	irgsp1_rep	three_prime_UTR	21668193	21668403	.	-	.	Parent=Os05t0442700-01
Chr05	irgsp1_rep	mRNA	21669039	21670019	.	+	.	ID=Os05t0442750-00;Name=Os05t0442750-00;Locus_id=Os05g0442750;Note=Hypothetical protein.;Transcript_evidence=FP093663 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0442750-00
Chr05	irgsp1_rep	CDS	21669039	21669365	.	+	0	Parent=Os05t0442750-00
Chr05	irgsp1_rep	three_prime_UTR	21669366	21669707	.	+	.	Parent=Os05t0442750-00
Chr05	irgsp1_rep	three_prime_UTR	21669764	21669876	.	+	.	Parent=Os05t0442750-00
Chr05	irgsp1_rep	three_prime_UTR	21669956	21670019	.	+	.	Parent=Os05t0442750-00
Chr05	irgsp1_rep	mRNA	21692530	21697823	.	-	.	ID=Os05t0443300-01;Name=Os05t0443300-01;Locus_id=Os05g0443300;Note=Similar to predicted protein.;Transcript_evidence=AK288878 (DDBJ%2C Best hit);ORF_evidence=NP_565651.1 (RefSeq);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888),Cellular Component: COPII vesicle coat (GO:0030127),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=von Willebrand factor%2C type A (IPR002035),Zinc finger%2C Sec23/Sec24-type (IPR006895),Sec23/Sec24%2C trunk domain (IPR006896),Sec23/Sec24%2C helical domain (IPR006900);NIAS_FLcDNA=J090079C10;TENOR=Os05t0443300-01;KEGG=Os05t0443300-01
Chr05	irgsp1_rep	five_prime_UTR	21697728	21697823	.	-	.	Parent=Os05t0443300-01
Chr05	irgsp1_rep	CDS	21697400	21697727	.	-	0	Parent=Os05t0443300-01
Chr05	irgsp1_rep	CDS	21697221	21697292	.	-	2	Parent=Os05t0443300-01
Chr05	irgsp1_rep	CDS	21696821	21696874	.	-	2	Parent=Os05t0443300-01
Chr05	irgsp1_rep	CDS	21696534	21696709	.	-	2	Parent=Os05t0443300-01
Chr05	irgsp1_rep	CDS	21696264	21696450	.	-	0	Parent=Os05t0443300-01
Chr05	irgsp1_rep	CDS	21695964	21696109	.	-	2	Parent=Os05t0443300-01
Chr05	irgsp1_rep	CDS	21695719	21695873	.	-	0	Parent=Os05t0443300-01
Chr05	irgsp1_rep	CDS	21695519	21695600	.	-	1	Parent=Os05t0443300-01
Chr05	irgsp1_rep	CDS	21695324	21695439	.	-	0	Parent=Os05t0443300-01
Chr05	irgsp1_rep	CDS	21695091	21695186	.	-	1	Parent=Os05t0443300-01
Chr05	irgsp1_rep	CDS	21694679	21694802	.	-	1	Parent=Os05t0443300-01
Chr05	irgsp1_rep	CDS	21693976	21694241	.	-	0	Parent=Os05t0443300-01
Chr05	irgsp1_rep	CDS	21693118	21693332	.	-	1	Parent=Os05t0443300-01
Chr05	irgsp1_rep	CDS	21692794	21693020	.	-	2	Parent=Os05t0443300-01
Chr05	irgsp1_rep	three_prime_UTR	21692530	21692793	.	-	.	Parent=Os05t0443300-01
Chr05	irgsp1_rep	mRNA	21699996	21703558	.	-	.	ID=Os05t0443400-01;Name=Os05t0443400-01;Locus_id=Os05g0443400;Note=Similar to Glucan endo-1%2C3-beta-glucosidase 7.;Transcript_evidence=AK072943 (DDBJ%2C Best hit);ORF_evidence=B6SUM3 (UniProt);NIAS_FLcDNA=J023148N05;TENOR=Os05t0443400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	21703529	21703558	.	-	.	Parent=Os05t0443400-01
Chr05	irgsp1_rep	CDS	21703387	21703528	.	-	0	Parent=Os05t0443400-01
Chr05	irgsp1_rep	CDS	21702230	21702453	.	-	2	Parent=Os05t0443400-01
Chr05	irgsp1_rep	three_prime_UTR	21699996	21702229	.	-	.	Parent=Os05t0443400-01
Chr05	irgsp1_rep	mRNA	21699330	21702571	.	-	.	ID=Os05t0443400-02;Name=Os05t0443400-02;Locus_id=Os05g0443400;Note=Similar to Glucan endo-1%2C3-beta-glucosidase 7.;Transcript_evidence=AK067284 (DDBJ%2C Best hit);ORF_evidence=B6SUM3 (UniProt);NIAS_FLcDNA=J013100P21;Expression=AK067284;TENOR=Os05t0443400-02;KEGG=Os05t0443400-02
Chr05	irgsp1_rep	five_prime_UTR	21702557	21702571	.	-	.	Parent=Os05t0443400-02
Chr05	irgsp1_rep	CDS	21702230	21702556	.	-	0	Parent=Os05t0443400-02
Chr05	irgsp1_rep	three_prime_UTR	21701397	21702229	.	-	.	Parent=Os05t0443400-02
Chr05	irgsp1_rep	three_prime_UTR	21699330	21700922	.	-	.	Parent=Os05t0443400-02
Chr05	irgsp1_rep	mRNA	21705751	21707086	.	-	.	ID=Os05t0443500-01;Name=Os05t0443500-01;Locus_id=Os05g0443500;Oryzabase Gene Symbol Synonym(s)=Fd%2C OsFd4%2C Fd4;Oryzabase Gene Name Synonym(s)=ferredoxin%2C Ferredoxin B1%2C ferredoxin 4;Note=Similar to Ferredoxin VI%2C chloroplast precursor (Fd VI).;Transcript_evidence=AK103416 (DDBJ%2C Best hit);ORF_evidence=Q8S3J5 (UniProt);GO=Biological Process: electron transport chain (GO:0022900),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: iron-sulfur cluster binding (GO:0051536),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=Ferredoxin (IPR001041),2Fe-2S ferredoxin%2C iron-sulphur binding site (IPR006058),Ferredoxin [2Fe-2S]%2C plant (IPR010241),Beta-grasp fold%2C ferredoxin-type (IPR012675);NIAS_FLcDNA=J033128I21;Oryzabase=14411;Expression=AK103416;TENOR=Os05t0443500-01;KEGG=Os05t0443500-01
Chr05	irgsp1_rep	five_prime_UTR	21706488	21707086	.	-	.	Parent=Os05t0443500-01
Chr05	irgsp1_rep	CDS	21706041	21706487	.	-	0	Parent=Os05t0443500-01
Chr05	irgsp1_rep	three_prime_UTR	21705751	21706040	.	-	.	Parent=Os05t0443500-01
Chr05	irgsp1_rep	mRNA	21708483	21711661	.	-	.	ID=Os05t0443700-01;Name=Os05t0443700-01;Locus_id=Os05g0443700;Oryzabase Gene Symbol Synonym(s)=OsSTA150;Note=Syntaxin 6%2C N-terminal domain containing protein.;Transcript_evidence=AK071068 (DDBJ%2C Best hit);ORF_evidence=B9FJ84 (UniProt);GO=Biological Process: vesicle-mediated transport (GO:0016192),Biological Process: Golgi vesicle transport (GO:0048193),Cellular Component: membrane (GO:0016020);InterPro=t-SNARE (IPR010989),Syntaxin 6%2C N-terminal (IPR015260);NIAS_FLcDNA=J023081K10;Oryzabase=19438;Expression=AK071068;TENOR=Os05t0443700-01;KEGG=Os05t0443700-01
Chr05	irgsp1_rep	five_prime_UTR	21711531	21711661	.	-	.	Parent=Os05t0443700-01
Chr05	irgsp1_rep	CDS	21711454	21711530	.	-	0	Parent=Os05t0443700-01
Chr05	irgsp1_rep	CDS	21710351	21710483	.	-	1	Parent=Os05t0443700-01
Chr05	irgsp1_rep	CDS	21709569	21710219	.	-	0	Parent=Os05t0443700-01
Chr05	irgsp1_rep	CDS	21709288	21709408	.	-	0	Parent=Os05t0443700-01
Chr05	irgsp1_rep	CDS	21708869	21708894	.	-	2	Parent=Os05t0443700-01
Chr05	irgsp1_rep	three_prime_UTR	21708483	21708868	.	-	.	Parent=Os05t0443700-01
Chr05	irgsp1_rep	mRNA	21711936	21715624	.	-	.	ID=Os05t0443800-01;Name=Os05t0443800-01;Locus_id=Os05g0443800;Note=Similar to Plastid division protein ftsZ1 precursor.;Transcript_evidence=AK106590 (DDBJ%2C Best hit);ORF_evidence=Q9SDW5 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: protein polymerization (GO:0051258),Cellular Component: cytoplasm (GO:0005737),Cellular Component: protein complex (GO:0043234),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Cell division protein FtsZ (IPR000158),Tubulin/FtsZ%2C GTPase domain (IPR003008),Tubulin/FtsZ%2C C-terminal (IPR008280),Tubulin/FtsZ%2C 2-layer sandwich domain (IPR018316),Cell division protein FtsZ%2C conserved site (IPR020805),Cell division protein FtsZ%2C C-terminal (IPR024757);NIAS_FLcDNA=002-111-G04;Expression=AK106590;TENOR=Os05t0443800-01;KEGG=Os05t0443800-01
Chr05	irgsp1_rep	five_prime_UTR	21715427	21715624	.	-	.	Parent=Os05t0443800-01
Chr05	irgsp1_rep	five_prime_UTR	21715184	21715296	.	-	.	Parent=Os05t0443800-01
Chr05	irgsp1_rep	CDS	21714560	21715183	.	-	0	Parent=Os05t0443800-01
Chr05	irgsp1_rep	CDS	21713973	21714272	.	-	0	Parent=Os05t0443800-01
Chr05	irgsp1_rep	CDS	21713408	21713498	.	-	0	Parent=Os05t0443800-01
Chr05	irgsp1_rep	CDS	21712940	21713064	.	-	2	Parent=Os05t0443800-01
Chr05	irgsp1_rep	CDS	21712589	21712681	.	-	0	Parent=Os05t0443800-01
Chr05	irgsp1_rep	CDS	21712386	21712445	.	-	0	Parent=Os05t0443800-01
Chr05	irgsp1_rep	CDS	21712159	21712284	.	-	0	Parent=Os05t0443800-01
Chr05	irgsp1_rep	three_prime_UTR	21711936	21712158	.	-	.	Parent=Os05t0443800-01
Chr05	irgsp1_rep	mRNA	21715367	21715771	.	+	.	ID=Os05t0443850-00;Name=Os05t0443850-00;Locus_id=Os05g0443850;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os05t0443850-00;KEGG=Os05t0443850-00
Chr05	irgsp1_rep	CDS	21715367	21715771	.	+	0	Parent=Os05t0443850-00
Chr05	irgsp1_rep	mRNA	21718749	21724490	.	+	.	ID=Os05t0443900-01;Name=Os05t0443900-01;Locus_id=Os05g0443900;RAP-DB Gene Symbol Synonym(s)=OsLG2L;RAP-DB Gene Name Synonym(s)=LIGULELESS 2 like;CGSNL Gene Symbol=BZIP41;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 41;Oryzabase Gene Symbol Synonym(s)=OsbZIP41%2C TGA1;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 41%2C TGA transcription factor 1;Note=Ortholog of ZmLG2%2C bZIP transcriptional factor%2C Lamina joint positioning and differentiation;Transcript_evidence=AK109520;ORF_evidence=Q6F2N0;GO=Biological Process: transcription%2C DNA-templated (GO:0006351),Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA-binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Basic-leucine zipper domain (IPR004827),Transcription factor TGA like domain (IPR025422);NIAS_FLcDNA=002-113-G01;Manual Curation=September 30%2C 2020;Literature_PMID=32985689;Oryzabase=10126;Expression=AK109520;TENOR=Os05t0443900-01;KEGG=Os05t0443900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	21718749	21718951	.	+	.	Parent=Os05t0443900-01
Chr05	irgsp1_rep	five_prime_UTR	21720399	21720489	.	+	.	Parent=Os05t0443900-01
Chr05	irgsp1_rep	CDS	21720490	21720517	.	+	0	Parent=Os05t0443900-01
Chr05	irgsp1_rep	CDS	21720832	21720914	.	+	2	Parent=Os05t0443900-01
Chr05	irgsp1_rep	CDS	21721050	21721274	.	+	0	Parent=Os05t0443900-01
Chr05	irgsp1_rep	CDS	21721842	21721889	.	+	0	Parent=Os05t0443900-01
Chr05	irgsp1_rep	CDS	21721976	21722035	.	+	0	Parent=Os05t0443900-01
Chr05	irgsp1_rep	CDS	21722123	21722200	.	+	0	Parent=Os05t0443900-01
Chr05	irgsp1_rep	CDS	21722304	21722349	.	+	0	Parent=Os05t0443900-01
Chr05	irgsp1_rep	CDS	21722448	21722719	.	+	2	Parent=Os05t0443900-01
Chr05	irgsp1_rep	CDS	21722828	21723067	.	+	0	Parent=Os05t0443900-01
Chr05	irgsp1_rep	CDS	21723917	21724059	.	+	0	Parent=Os05t0443900-01
Chr05	irgsp1_rep	CDS	21724177	21724267	.	+	1	Parent=Os05t0443900-01
Chr05	irgsp1_rep	three_prime_UTR	21724268	21724490	.	+	.	Parent=Os05t0443900-01
Chr05	irgsp1_rep	mRNA	21737310	21739700	.	+	.	ID=Os05t0444200-01;Name=Os05t0444200-01;Locus_id=Os05g0444200;CGSNL Gene Symbol=DLN142;CGSNL Gene Name=DLN REPRESSOR 142;Oryzabase Gene Symbol Synonym(s)=OsDLN142;Oryzabase Gene Name Synonym(s)=DLN repressor 142%2C DLN motif protein 142;Note=Similar to T6J4.5 protein (WIP6 protein).;Transcript_evidence=AK102658 (DDBJ%2C Best hit);ORF_evidence=NP_175533.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Post-SET domain (IPR003616),Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J033101H19;Oryzabase=23200;Expression=AK102658;TENOR=Os05t0444200-01;KEGG=Os05t0444200-01
Chr05	irgsp1_rep	five_prime_UTR	21737310	21737547	.	+	.	Parent=Os05t0444200-01
Chr05	irgsp1_rep	CDS	21737548	21738228	.	+	0	Parent=Os05t0444200-01
Chr05	irgsp1_rep	CDS	21738865	21739353	.	+	0	Parent=Os05t0444200-01
Chr05	irgsp1_rep	three_prime_UTR	21739354	21739700	.	+	.	Parent=Os05t0444200-01
Chr05	irgsp1_rep	mRNA	21750821	21754162	.	+	.	ID=Os05t0444300-01;Name=Os05t0444300-01;Locus_id=Os05g0444300;Note=Protein of unknown function DUF914%2C eukaryotic family protein.;Transcript_evidence=AK066046 (DDBJ%2C Best hit);ORF_evidence=B6TXS8 (UniProt);InterPro=Protein of unknown function DUF914%2C eukaryotic (IPR009262);NIAS_FLcDNA=J013048I21;Expression=AK066046;TENOR=Os05t0444300-01;KEGG=Os05t0444300-01
Chr05	irgsp1_rep	five_prime_UTR	21750821	21750932	.	+	.	Parent=Os05t0444300-01
Chr05	irgsp1_rep	CDS	21750933	21751062	.	+	0	Parent=Os05t0444300-01
Chr05	irgsp1_rep	CDS	21751199	21751293	.	+	2	Parent=Os05t0444300-01
Chr05	irgsp1_rep	CDS	21751406	21751463	.	+	0	Parent=Os05t0444300-01
Chr05	irgsp1_rep	CDS	21751603	21751797	.	+	2	Parent=Os05t0444300-01
Chr05	irgsp1_rep	CDS	21752146	21752225	.	+	2	Parent=Os05t0444300-01
Chr05	irgsp1_rep	CDS	21752327	21752409	.	+	0	Parent=Os05t0444300-01
Chr05	irgsp1_rep	CDS	21752540	21752591	.	+	1	Parent=Os05t0444300-01
Chr05	irgsp1_rep	CDS	21752717	21752785	.	+	0	Parent=Os05t0444300-01
Chr05	irgsp1_rep	CDS	21753306	21753392	.	+	0	Parent=Os05t0444300-01
Chr05	irgsp1_rep	CDS	21753474	21753538	.	+	0	Parent=Os05t0444300-01
Chr05	irgsp1_rep	CDS	21753617	21753767	.	+	1	Parent=Os05t0444300-01
Chr05	irgsp1_rep	three_prime_UTR	21753768	21754162	.	+	.	Parent=Os05t0444300-01
Chr05	irgsp1_rep	mRNA	21758366	21760742	.	+	.	ID=Os05t0444500-00;Name=Os05t0444500-00;Locus_id=Os05g0444500;Note=Similar to solute carrier family 35%2C member F1.;Transcript_evidence=EU969793 (DDBJ);ORF_evidence=B6TXS8 (UniProt);InterPro=Protein of unknown function DUF914%2C eukaryotic (IPR009262);TENOR=Os05t0444500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	21758366	21758414	.	+	.	Parent=Os05t0444500-00
Chr05	irgsp1_rep	CDS	21758415	21758526	.	+	0	Parent=Os05t0444500-00
Chr05	irgsp1_rep	CDS	21758611	21758705	.	+	2	Parent=Os05t0444500-00
Chr05	irgsp1_rep	CDS	21758801	21758858	.	+	0	Parent=Os05t0444500-00
Chr05	irgsp1_rep	CDS	21758988	21759182	.	+	2	Parent=Os05t0444500-00
Chr05	irgsp1_rep	CDS	21759382	21759461	.	+	2	Parent=Os05t0444500-00
Chr05	irgsp1_rep	CDS	21759547	21759629	.	+	0	Parent=Os05t0444500-00
Chr05	irgsp1_rep	CDS	21759792	21759846	.	+	1	Parent=Os05t0444500-00
Chr05	irgsp1_rep	CDS	21759941	21760009	.	+	0	Parent=Os05t0444500-00
Chr05	irgsp1_rep	CDS	21760174	21760239	.	+	0	Parent=Os05t0444500-00
Chr05	irgsp1_rep	three_prime_UTR	21760240	21760260	.	+	.	Parent=Os05t0444500-00
Chr05	irgsp1_rep	three_prime_UTR	21760339	21760403	.	+	.	Parent=Os05t0444500-00
Chr05	irgsp1_rep	three_prime_UTR	21760497	21760742	.	+	.	Parent=Os05t0444500-00
Chr05	irgsp1_rep	mRNA	21761628	21762740	.	-	.	ID=Os05t0444750-01;Name=Os05t0444750-01;Locus_id=Os05g0444750;Note=Hypothetical conserved gene.;Transcript_evidence=AK242987 (DDBJ%2C Best hit);ORF_evidence=B9FPV0 (UniProt);NIAS_FLcDNA=J090095A12;TENOR=Os05t0444750-01;KEGG=Os05t0444750-01
Chr05	irgsp1_rep	five_prime_UTR	21762531	21762740	.	-	.	Parent=Os05t0444750-01
Chr05	irgsp1_rep	CDS	21762162	21762530	.	-	0	Parent=Os05t0444750-01
Chr05	irgsp1_rep	three_prime_UTR	21761628	21762161	.	-	.	Parent=Os05t0444750-01
Chr05	irgsp1_rep	mRNA	21790822	21792552	.	-	.	ID=Os05t0445000-01;Name=Os05t0445000-01;Locus_id=Os05g0445000;Oryzabase Gene Symbol Synonym(s)=OsRab7B2;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab7B2;Note=Hypothetical protein.;Transcript_evidence=AK111423 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-182-G11;Oryzabase=11089;Expression=AK111423;TENOR=Os05t0445000-01;KEGG=Os05t0445000-01
Chr05	irgsp1_rep	five_prime_UTR	21791722	21792552	.	-	.	Parent=Os05t0445000-01
Chr05	irgsp1_rep	CDS	21791032	21791721	.	-	0	Parent=Os05t0445000-01
Chr05	irgsp1_rep	three_prime_UTR	21790822	21791031	.	-	.	Parent=Os05t0445000-01
Chr05	irgsp1_rep	mRNA	21790875	21793270	.	+	.	ID=Os05t0445100-01;Name=Os05t0445100-01;Locus_id=Os05g0445100;CGSNL Gene Symbol=CYP94C4;CGSNL Gene Name=CYTOCHROME P450 94C4;Oryzabase Gene Symbol Synonym(s)=OsCYP94C4;Oryzabase Gene Name Synonym(s)=CytoChrome P450 94C4;Note=CytoChrome P450 family protein.;Transcript_evidence=AK105264 (DDBJ%2C Best hit);ORF_evidence=XP_002328165.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);NIAS_FLcDNA=001-115-D01;Oryzabase=15296;Expression=AK105264;TENOR=Os05t0445100-01;KEGG=Os05t0445100-01 (EC:1.14.13.30)
Chr05	irgsp1_rep	five_prime_UTR	21790875	21790989	.	+	.	Parent=Os05t0445100-01
Chr05	irgsp1_rep	CDS	21790990	21792549	.	+	0	Parent=Os05t0445100-01
Chr05	irgsp1_rep	three_prime_UTR	21792550	21793270	.	+	.	Parent=Os05t0445100-01
Chr05	irgsp1_rep	mRNA	21791974	21792867	.	+	.	ID=Os05t0445100-02;Name=Os05t0445100-02;Locus_id=Os05g0445100;CGSNL Gene Symbol=CYP94C4;CGSNL Gene Name=CYTOCHROME P450 94C4;Oryzabase Gene Symbol Synonym(s)=OsCYP94C4;Oryzabase Gene Name Synonym(s)=CytoChrome P450 94C4;Note=CytoChrome P450 domain containing protein.;Transcript_evidence=AK105131 (DDBJ%2C Best hit);ORF_evidence=B9FPV1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: monooxygenase activity (GO:0004497),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group IV (IPR002403);NIAS_FLcDNA=001-101-G02;Oryzabase=15296;TENOR=Os05t0445100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	21791974	21792087	.	+	.	Parent=Os05t0445100-02
Chr05	irgsp1_rep	CDS	21792088	21792549	.	+	0	Parent=Os05t0445100-02
Chr05	irgsp1_rep	three_prime_UTR	21792550	21792867	.	+	.	Parent=Os05t0445100-02
Chr05	irgsp1_rep	mRNA	21835435	21837665	.	+	.	ID=Os05t0445500-01;Name=Os05t0445500-01;Locus_id=Os05g0445500;Oryzabase Gene Name Synonym(s)=Ribosomal protein L12eI%2C Ribosomal protein A2;Note=Similar to Acidic ribosomal protein (Fragment).;Transcript_evidence=AK121459 (DDBJ%2C Best hit);ORF_evidence=Q7XYD5 (UniProt);GO=Biological Process: translational elongation (GO:0006414),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein 60S (IPR001813);NIAS_FLcDNA=J023143J09;Oryzabase=17659;TENOR=Os05t0445500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	21835435	21835436	.	+	.	Parent=Os05t0445500-01
Chr05	irgsp1_rep	CDS	21835437	21835496	.	+	0	Parent=Os05t0445500-01
Chr05	irgsp1_rep	CDS	21836264	21836369	.	+	0	Parent=Os05t0445500-01
Chr05	irgsp1_rep	CDS	21836684	21836910	.	+	2	Parent=Os05t0445500-01
Chr05	irgsp1_rep	CDS	21837280	21837306	.	+	0	Parent=Os05t0445500-01
Chr05	irgsp1_rep	three_prime_UTR	21837307	21837665	.	+	.	Parent=Os05t0445500-01
Chr05	irgsp1_rep	mRNA	21836708	21837536	.	+	.	ID=Os05t0445500-02;Name=Os05t0445500-02;Locus_id=Os05g0445500;Oryzabase Gene Name Synonym(s)=Ribosomal protein L12eI%2C Ribosomal protein A2;Note=Similar to 60S acidic ribosomal protein p2b (Fragment).;Transcript_evidence=AK058730 (DDBJ%2C Best hit);ORF_evidence=A6MZN1 (UniProt);GO=Biological Process: translational elongation (GO:0006414),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein 60S (IPR001813);NIAS_FLcDNA=001-019-F09;Oryzabase=17659;Expression=AK058730;TENOR=Os05t0445500-02;KEGG=Os05t0445500-02
Chr05	irgsp1_rep	five_prime_UTR	21836708	21836709	.	+	.	Parent=Os05t0445500-02
Chr05	irgsp1_rep	CDS	21836710	21836910	.	+	0	Parent=Os05t0445500-02
Chr05	irgsp1_rep	CDS	21837280	21837306	.	+	0	Parent=Os05t0445500-02
Chr05	irgsp1_rep	three_prime_UTR	21837307	21837536	.	+	.	Parent=Os05t0445500-02
Chr05	irgsp1_rep	mRNA	21839586	21842394	.	-	.	ID=Os05t0445650-00;Name=Os05t0445650-00;Locus_id=Os05g0445650;Note=Hypothetical protein.;Transcript_evidence=tplb0041a03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0445650-00
Chr05	irgsp1_rep	five_prime_UTR	21841033	21842394	.	-	.	Parent=Os05t0445650-00
Chr05	irgsp1_rep	five_prime_UTR	21840366	21840695	.	-	.	Parent=Os05t0445650-00
Chr05	irgsp1_rep	CDS	21840348	21840365	.	-	0	Parent=Os05t0445650-00
Chr05	irgsp1_rep	CDS	21840027	21840257	.	-	0	Parent=Os05t0445650-00
Chr05	irgsp1_rep	three_prime_UTR	21839810	21840026	.	-	.	Parent=Os05t0445650-00
Chr05	irgsp1_rep	three_prime_UTR	21839586	21839711	.	-	.	Parent=Os05t0445650-00
Chr05	irgsp1_rep	mRNA	21839593	21842267	.	+	.	ID=Os05t0445800-00;Name=Os05t0445800-00;Locus_id=Os05g0445800;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001055684.2 (RefSeq);TENOR=Os05t0445800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	21839593	21839712	.	+	0	Parent=Os05t0445800-00
Chr05	irgsp1_rep	CDS	21839811	21840262	.	+	0	Parent=Os05t0445800-00
Chr05	irgsp1_rep	CDS	21840359	21840674	.	+	1	Parent=Os05t0445800-00
Chr05	irgsp1_rep	CDS	21841008	21842267	.	+	0	Parent=Os05t0445800-00
Chr05	irgsp1_rep	mRNA	21843346	21856378	.	-	.	ID=Os05t0445900-01;Name=Os05t0445900-01;Locus_id=Os05g0445900;RAP-DB Gene Symbol Synonym(s)=DNG701;RAP-DB Gene Name Synonym(s)=DNA glycosylase/lyase 701;Oryzabase Gene Symbol Synonym(s)=ROS1C%2C ROS1c%2C DME2;Oryzabase Gene Name Synonym(s)=REPRESSOR OF SILENCING 1c;Note=5-methylcytosine DNA glycosylase/lyase%2C Demethylation of retrotransposon Tos17%2C Promotion of Tos17 transposition%2C Seed development;Transcript_evidence=FJ536320;ORF_evidence=B8YIE8;GO=Biological Process: DNA repair (GO:0006281),Biological Process: base-excision repair (GO:0006284),Molecular Function: catalytic activity (GO:0003824),Molecular Function: 4 iron%2C 4 sulfur cluster binding (GO:0051539);InterPro=DNA glycosylase (IPR011257),HhH-GPD domain (IPR003265),Helix-turn-helix%2C base-excision DNA repair%2C C-terminal (IPR023170),Demeter%2C RRM-fold domain (IPR028925),Endonuclease III-like%2C iron-sulphur cluster loop motif (IPR003651);NIAS_FLcDNA=J033149J07(truncated), J023061C10(truncated);Manual Curation=May 24%2C 2017;Literature_PMID=22448681,21896764;Oryzabase=18228;TENOR=Os05t0445900-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=nucleus (GO:0005634)
Chr05	irgsp1_rep	five_prime_UTR	21856084	21856378	.	-	.	Parent=Os05t0445900-01
Chr05	irgsp1_rep	five_prime_UTR	21855941	21855958	.	-	.	Parent=Os05t0445900-01
Chr05	irgsp1_rep	CDS	21855520	21855940	.	-	0	Parent=Os05t0445900-01
Chr05	irgsp1_rep	CDS	21853268	21855421	.	-	2	Parent=Os05t0445900-01
Chr05	irgsp1_rep	CDS	21852476	21852566	.	-	2	Parent=Os05t0445900-01
Chr05	irgsp1_rep	CDS	21851467	21852368	.	-	1	Parent=Os05t0445900-01
Chr05	irgsp1_rep	CDS	21849495	21849892	.	-	2	Parent=Os05t0445900-01
Chr05	irgsp1_rep	CDS	21849095	21849174	.	-	0	Parent=Os05t0445900-01
Chr05	irgsp1_rep	CDS	21848676	21848760	.	-	1	Parent=Os05t0445900-01
Chr05	irgsp1_rep	CDS	21848511	21848602	.	-	0	Parent=Os05t0445900-01
Chr05	irgsp1_rep	CDS	21848339	21848407	.	-	1	Parent=Os05t0445900-01
Chr05	irgsp1_rep	CDS	21848086	21848122	.	-	1	Parent=Os05t0445900-01
Chr05	irgsp1_rep	CDS	21847902	21847984	.	-	0	Parent=Os05t0445900-01
Chr05	irgsp1_rep	CDS	21846753	21847190	.	-	1	Parent=Os05t0445900-01
Chr05	irgsp1_rep	CDS	21846569	21846605	.	-	1	Parent=Os05t0445900-01
Chr05	irgsp1_rep	CDS	21846428	21846491	.	-	0	Parent=Os05t0445900-01
Chr05	irgsp1_rep	CDS	21846209	21846348	.	-	2	Parent=Os05t0445900-01
Chr05	irgsp1_rep	CDS	21845072	21845137	.	-	0	Parent=Os05t0445900-01
Chr05	irgsp1_rep	CDS	21844853	21844967	.	-	0	Parent=Os05t0445900-01
Chr05	irgsp1_rep	CDS	21844734	21844772	.	-	2	Parent=Os05t0445900-01
Chr05	irgsp1_rep	CDS	21843770	21843897	.	-	2	Parent=Os05t0445900-01
Chr05	irgsp1_rep	three_prime_UTR	21843346	21843769	.	-	.	Parent=Os05t0445900-01
Chr05	irgsp1_rep	mRNA	21843770	21856444	.	-	.	ID=Os05t0445900-02;Name=Os05t0445900-02;Locus_id=Os05g0445900;RAP-DB Gene Symbol Synonym(s)=ROS1c;RAP-DB Gene Name Synonym(s)=REPRESSOR OF SILENCING 1c;Oryzabase Gene Symbol Synonym(s)=ROS1C%2C ROS1c%2C DME2;Oryzabase Gene Name Synonym(s)=REPRESSOR OF SILENCING 1c;Note=5-methylcytosine DNA glycosylase/lyase;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Biological Process: DNA repair (GO:0006281),Biological Process: base-excision repair (GO:0006284),Molecular Function: catalytic activity (GO:0003824),Molecular Function: 4 iron%2C 4 sulfur cluster binding (GO:0051539);InterPro=DNA glycosylase (IPR011257),HhH-GPD domain (IPR003265),Helix-turn-helix%2C base-excision DNA repair%2C C-terminal (IPR023170),Demeter%2C RRM-fold domain (IPR028925),Endonuclease III-like%2C iron-sulphur cluster loop motif (IPR003651);Manual Curation=May 24%2C 2017;Literature_PMID=22448681;Oryzabase=18228
Chr05	irgsp1_rep	CDS	21856325	21856444	.	-	0	Parent=Os05t0445900-02
Chr05	irgsp1_rep	CDS	21855520	21855958	.	-	0	Parent=Os05t0445900-02
Chr05	irgsp1_rep	CDS	21853268	21855418	.	-	2	Parent=Os05t0445900-02
Chr05	irgsp1_rep	CDS	21852476	21852566	.	-	2	Parent=Os05t0445900-02
Chr05	irgsp1_rep	CDS	21851467	21852368	.	-	1	Parent=Os05t0445900-02
Chr05	irgsp1_rep	CDS	21849495	21849892	.	-	2	Parent=Os05t0445900-02
Chr05	irgsp1_rep	CDS	21849095	21849174	.	-	0	Parent=Os05t0445900-02
Chr05	irgsp1_rep	CDS	21848676	21848760	.	-	1	Parent=Os05t0445900-02
Chr05	irgsp1_rep	CDS	21848511	21848602	.	-	0	Parent=Os05t0445900-02
Chr05	irgsp1_rep	CDS	21848339	21848407	.	-	1	Parent=Os05t0445900-02
Chr05	irgsp1_rep	CDS	21848086	21848122	.	-	1	Parent=Os05t0445900-02
Chr05	irgsp1_rep	CDS	21847902	21847984	.	-	0	Parent=Os05t0445900-02
Chr05	irgsp1_rep	CDS	21846753	21847190	.	-	1	Parent=Os05t0445900-02
Chr05	irgsp1_rep	CDS	21846569	21846605	.	-	1	Parent=Os05t0445900-02
Chr05	irgsp1_rep	CDS	21846458	21846491	.	-	0	Parent=Os05t0445900-02
Chr05	irgsp1_rep	CDS	21846209	21846348	.	-	2	Parent=Os05t0445900-02
Chr05	irgsp1_rep	CDS	21845072	21845137	.	-	0	Parent=Os05t0445900-02
Chr05	irgsp1_rep	CDS	21844853	21844967	.	-	0	Parent=Os05t0445900-02
Chr05	irgsp1_rep	CDS	21844734	21844772	.	-	2	Parent=Os05t0445900-02
Chr05	irgsp1_rep	CDS	21843770	21843897	.	-	2	Parent=Os05t0445900-02
Chr05	irgsp1_rep	mRNA	21875938	21878426	.	+	.	ID=Os05t0446300-01;Name=Os05t0446300-01;Locus_id=Os05g0446300;Note=Similar to G10 protein homolog (EDG-2).;Transcript_evidence=AK066998 (DDBJ%2C Best hit);ORF_evidence=B3TLZ6 (UniProt);GO=Cellular Component: nucleus (GO:0005634);InterPro=G10 protein (IPR001748),BUD31/G10-related%2C conserved site (IPR018230);NIAS_FLcDNA=J013089L11;Expression=AK066998;TENOR=Os05t0446300-01;KEGG=Os05t0446300-01
Chr05	irgsp1_rep	five_prime_UTR	21875938	21876116	.	+	.	Parent=Os05t0446300-01
Chr05	irgsp1_rep	five_prime_UTR	21876266	21876292	.	+	.	Parent=Os05t0446300-01
Chr05	irgsp1_rep	CDS	21876293	21876386	.	+	0	Parent=Os05t0446300-01
Chr05	irgsp1_rep	CDS	21876526	21876713	.	+	2	Parent=Os05t0446300-01
Chr05	irgsp1_rep	CDS	21877951	21878106	.	+	0	Parent=Os05t0446300-01
Chr05	irgsp1_rep	three_prime_UTR	21878107	21878426	.	+	.	Parent=Os05t0446300-01
Chr05	irgsp1_rep	mRNA	21881813	21884995	.	+	.	ID=Os05t0446500-01;Name=Os05t0446500-01;Locus_id=Os05g0446500;Note=Conserved hypothetical protein.;Transcript_evidence=AK099953 (DDBJ%2C Best hit);ORF_evidence=B8AYR4 (UniProt);NIAS_FLcDNA=J013124C24;Expression=AK099953;TENOR=Os05t0446500-01;KEGG=Os05t0446500-01
Chr05	irgsp1_rep	five_prime_UTR	21881813	21882219	.	+	.	Parent=Os05t0446500-01
Chr05	irgsp1_rep	CDS	21882220	21882339	.	+	0	Parent=Os05t0446500-01
Chr05	irgsp1_rep	CDS	21882415	21882866	.	+	0	Parent=Os05t0446500-01
Chr05	irgsp1_rep	CDS	21882964	21883279	.	+	1	Parent=Os05t0446500-01
Chr05	irgsp1_rep	CDS	21883608	21884867	.	+	0	Parent=Os05t0446500-01
Chr05	irgsp1_rep	three_prime_UTR	21884868	21884995	.	+	.	Parent=Os05t0446500-01
Chr05	irgsp1_rep	mRNA	21881826	21889053	.	+	.	ID=Os05t0446500-02;Name=Os05t0446500-02;Locus_id=Os05g0446500;Note=Conserved hypothetical protein.;Transcript_evidence=AK069373 (DDBJ%2C Best hit);ORF_evidence=B8AYR4 (UniProt);NIAS_FLcDNA=J023012O12;Expression=AK069373;TENOR=Os05t0446500-02;KEGG=Os05t0446500-02
Chr05	irgsp1_rep	five_prime_UTR	21881826	21882219	.	+	.	Parent=Os05t0446500-02
Chr05	irgsp1_rep	CDS	21882220	21882339	.	+	0	Parent=Os05t0446500-02
Chr05	irgsp1_rep	CDS	21882415	21882866	.	+	0	Parent=Os05t0446500-02
Chr05	irgsp1_rep	CDS	21882964	21883279	.	+	1	Parent=Os05t0446500-02
Chr05	irgsp1_rep	CDS	21883608	21884867	.	+	0	Parent=Os05t0446500-02
Chr05	irgsp1_rep	three_prime_UTR	21884868	21885246	.	+	.	Parent=Os05t0446500-02
Chr05	irgsp1_rep	three_prime_UTR	21888402	21889053	.	+	.	Parent=Os05t0446500-02
Chr05	irgsp1_rep	mRNA	21886293	21887419	.	-	.	ID=Os05t0446550-00;Name=Os05t0446550-00;Locus_id=Os05g0446550;CGSNL Gene Symbol=ROS1D;CGSNL Gene Name=REPRESSOR OF SILENCING 1D;Oryzabase Gene Symbol Synonym(s)=OsROS1D%2C ROS1d;Oryzabase Gene Name Synonym(s)=REPRESSOR OF SILENCING 1d;Note=Similar to DNA glycosylase/lyase 701.;Transcript_evidence=ab initio prediction;ORF_evidence=B8YIE8 (UniProt);Oryzabase=18229;TENOR=Os05t0446550-00;KEGG=Os05t0446550-00
Chr05	irgsp1_rep	CDS	21887372	21887419	.	-	0	Parent=Os05t0446550-00
Chr05	irgsp1_rep	CDS	21887152	21887266	.	-	0	Parent=Os05t0446550-00
Chr05	irgsp1_rep	CDS	21887035	21887073	.	-	2	Parent=Os05t0446550-00
Chr05	irgsp1_rep	CDS	21886293	21886420	.	-	2	Parent=Os05t0446550-00
Chr05	irgsp1_rep	mRNA	21894387	21896812	.	-	.	ID=Os05t0446600-01;Name=Os05t0446600-01;Locus_id=Os05g0446600;CGSNL Gene Symbol=ROS1D;CGSNL Gene Name=REPRESSOR OF SILENCING 1D;Oryzabase Gene Symbol Synonym(s)=OsROS1D%2C ROS1d;Oryzabase Gene Name Synonym(s)=REPRESSOR OF SILENCING 1d;Note=Similar to DNA glycosylase/lyase 701.;Transcript_evidence=AK068137 (DDBJ%2C Best hit);ORF_evidence=B8YIE8 (UniProt);NIAS_FLcDNA=J013134J03;Oryzabase=18229;TENOR=Os05t0446600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	21896548	21896812	.	-	.	Parent=Os05t0446600-01
Chr05	irgsp1_rep	five_prime_UTR	21896401	21896418	.	-	.	Parent=Os05t0446600-01
Chr05	irgsp1_rep	CDS	21895995	21896400	.	-	0	Parent=Os05t0446600-01
Chr05	irgsp1_rep	CDS	21894387	21895897	.	-	2	Parent=Os05t0446600-01
Chr05	irgsp1_rep	mRNA	21903391	21911328	.	-	.	ID=Os05t0446800-01;Name=Os05t0446800-01;Locus_id=Os05g0446800;Note=Similar to Arginyl-tRNA--protein transferase 1 (EC 2.3.2.8) (R-transferase 1) (Arginyltransferase 1) (Arginine-tRNA--protein transferase 1). Splice isoform ATE1-2.;Transcript_evidence=AK065861 (DDBJ%2C Best hit);ORF_evidence=B8AYR5 (UniProt);GO=Biological Process: protein arginylation (GO:0016598),Molecular Function: arginyltransferase activity (GO:0004057);InterPro=Arginine-tRNA-protein transferase%2C N-terminal (IPR007471),Arginine-tRNA-protein transferase%2C C-terminal (IPR007472),Acyl-CoA N-acyltransferase (IPR016181),Arginine-tRNA-protein transferase 1%2C eukaryotic (IPR017137);NIAS_FLcDNA=J013045J02;Expression=AK065861;TENOR=Os05t0446800-01;KEGG=Os05t0446800-01 (EC:2.3.2.8)
Chr05	irgsp1_rep	five_prime_UTR	21911164	21911328	.	-	.	Parent=Os05t0446800-01
Chr05	irgsp1_rep	CDS	21911016	21911163	.	-	0	Parent=Os05t0446800-01
Chr05	irgsp1_rep	CDS	21909308	21909346	.	-	2	Parent=Os05t0446800-01
Chr05	irgsp1_rep	CDS	21906381	21906531	.	-	2	Parent=Os05t0446800-01
Chr05	irgsp1_rep	CDS	21905109	21906266	.	-	1	Parent=Os05t0446800-01
Chr05	irgsp1_rep	CDS	21904036	21904351	.	-	1	Parent=Os05t0446800-01
Chr05	irgsp1_rep	CDS	21903554	21903676	.	-	0	Parent=Os05t0446800-01
Chr05	irgsp1_rep	three_prime_UTR	21903391	21903553	.	-	.	Parent=Os05t0446800-01
Chr05	irgsp1_rep	mRNA	21903232	21911296	.	-	.	ID=Os05t0446800-02;Name=Os05t0446800-02;Locus_id=Os05g0446800;Note=Similar to Arginyl-tRNA--protein transferase 1 (EC 2.3.2.8) (R-transferase 1) (Arginyltransferase 1) (Arginine-tRNA--protein transferase 1). Splice isoform ATE1-2.;Transcript_evidence=AK099450 (DDBJ%2C Best hit);ORF_evidence=B8AYR5 (UniProt);GO=Biological Process: protein arginylation (GO:0016598),Molecular Function: arginyltransferase activity (GO:0004057);InterPro=Arginine-tRNA-protein transferase%2C N-terminal (IPR007471),Arginine-tRNA-protein transferase%2C C-terminal (IPR007472),Acyl-CoA N-acyltransferase (IPR016181),Arginine-tRNA-protein transferase 1%2C eukaryotic (IPR017137);NIAS_FLcDNA=J013022G09;Expression=AK099450;TENOR=Os05t0446800-02;KEGG=Os05t0446800-02 (EC:2.3.2.8)
Chr05	irgsp1_rep	five_prime_UTR	21911164	21911296	.	-	.	Parent=Os05t0446800-02
Chr05	irgsp1_rep	CDS	21911016	21911163	.	-	0	Parent=Os05t0446800-02
Chr05	irgsp1_rep	CDS	21909308	21909346	.	-	2	Parent=Os05t0446800-02
Chr05	irgsp1_rep	CDS	21906381	21906531	.	-	2	Parent=Os05t0446800-02
Chr05	irgsp1_rep	CDS	21905109	21906266	.	-	1	Parent=Os05t0446800-02
Chr05	irgsp1_rep	CDS	21904036	21904351	.	-	1	Parent=Os05t0446800-02
Chr05	irgsp1_rep	CDS	21903554	21903676	.	-	0	Parent=Os05t0446800-02
Chr05	irgsp1_rep	three_prime_UTR	21903232	21903553	.	-	.	Parent=Os05t0446800-02
Chr05	irgsp1_rep	mRNA	21903335	21911268	.	-	.	ID=Os05t0446800-03;Name=Os05t0446800-03;Locus_id=Os05g0446800;Note=Similar to Arginyl-tRNA--protein transferase 1 (EC 2.3.2.8) (R-transferase 1) (Arginyltransferase 1) (Arginine-tRNA--protein transferase 1). Splice isoform ATE1-2.;Transcript_evidence=AK071336 (DDBJ%2C Best hit);ORF_evidence=B8AYR5 (UniProt);GO=Biological Process: protein arginylation (GO:0016598),Molecular Function: arginyltransferase activity (GO:0004057);InterPro=Arginine-tRNA-protein transferase%2C N-terminal (IPR007471),Arginine-tRNA-protein transferase%2C C-terminal (IPR007472),Acyl-CoA N-acyltransferase (IPR016181),Arginine-tRNA-protein transferase 1%2C eukaryotic (IPR017137);NIAS_FLcDNA=J023091P10;Expression=AK071336;TENOR=Os05t0446800-03;KEGG=Os05t0446800-03 (EC:2.3.2.8)
Chr05	irgsp1_rep	five_prime_UTR	21911164	21911268	.	-	.	Parent=Os05t0446800-03
Chr05	irgsp1_rep	CDS	21911016	21911163	.	-	0	Parent=Os05t0446800-03
Chr05	irgsp1_rep	CDS	21909308	21909346	.	-	2	Parent=Os05t0446800-03
Chr05	irgsp1_rep	CDS	21906381	21906531	.	-	2	Parent=Os05t0446800-03
Chr05	irgsp1_rep	CDS	21905109	21906266	.	-	1	Parent=Os05t0446800-03
Chr05	irgsp1_rep	CDS	21904036	21904351	.	-	1	Parent=Os05t0446800-03
Chr05	irgsp1_rep	CDS	21903554	21903676	.	-	0	Parent=Os05t0446800-03
Chr05	irgsp1_rep	three_prime_UTR	21903335	21903553	.	-	.	Parent=Os05t0446800-03
Chr05	irgsp1_rep	mRNA	21914875	21917380	.	-	.	ID=Os05t0446900-01;Name=Os05t0446900-01;Locus_id=Os05g0446900;RAP-DB Gene Symbol Synonym(s)=SBDCP2;RAP-DB Gene Name Synonym(s)=starch binding domain-containing protein 2;CGSNL Gene Symbol=SBDCP2;CGSNL Gene Name=STARCH BINDING DOMAIN-CONTAINING PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsSBDCP2;Oryzabase Gene Name Synonym(s)=starch binding domain-containing protein 2;Note=Starch-binding domain-containing protein%2C Starch biosynthesis;Transcript_evidence=AK101748;ORF_evidence=Q688J4;GO=Molecular Function: carbohydrate binding (GO:0030246),Molecular Function: starch binding (GO:2001070);InterPro=Carbohydrate-binding-like fold (IPR013784),Immunoglobulin-like fold (IPR013783),Carbohydrate binding module family 20 (IPR002044);NIAS_FLcDNA=J033061P17;Manual Curation=April 4%2C 2019;Literature_PMID=30523657;Oryzabase=23137;Expression=AK101748;TENOR=Os05t0446900-01;KEGG=Os05t0446900-01
Chr05	irgsp1_rep	five_prime_UTR	21917046	21917380	.	-	.	Parent=Os05t0446900-01
Chr05	irgsp1_rep	CDS	21916827	21917045	.	-	0	Parent=Os05t0446900-01
Chr05	irgsp1_rep	CDS	21916689	21916752	.	-	0	Parent=Os05t0446900-01
Chr05	irgsp1_rep	CDS	21916419	21916579	.	-	2	Parent=Os05t0446900-01
Chr05	irgsp1_rep	CDS	21915930	21916343	.	-	0	Parent=Os05t0446900-01
Chr05	irgsp1_rep	CDS	21915081	21915344	.	-	0	Parent=Os05t0446900-01
Chr05	irgsp1_rep	three_prime_UTR	21914875	21915080	.	-	.	Parent=Os05t0446900-01
Chr05	irgsp1_rep	mRNA	21920052	21920854	.	-	.	ID=Os05t0447000-01;Name=Os05t0447000-01;Locus_id=Os05g0447000;Note=Similar to Pleckstrin homology domain-containing protein 1 (AtPH1).;Transcript_evidence=AK108280 (DDBJ%2C Best hit);ORF_evidence=NP_001148629.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Pleckstrin homology domain (IPR001849),Pleckstrin homology-type (IPR011993);NIAS_FLcDNA=002-141-C12;Expression=AK108280;TENOR=Os05t0447000-01;KEGG=Os05t0447000-01
Chr05	irgsp1_rep	five_prime_UTR	21920745	21920854	.	-	.	Parent=Os05t0447000-01
Chr05	irgsp1_rep	CDS	21920226	21920744	.	-	0	Parent=Os05t0447000-01
Chr05	irgsp1_rep	three_prime_UTR	21920052	21920225	.	-	.	Parent=Os05t0447000-01
Chr05	irgsp1_rep	mRNA	21926917	21932028	.	-	.	ID=Os05t0447200-01;Name=Os05t0447200-01;Locus_id=Os05g0447200;RAP-DB Gene Symbol Synonym(s)=OsAUX3;Oryzabase Gene Symbol Synonym(s)=OsLAX3%2C OsRAU3%2C OsAUX2%2C LAX3%2C RAU3%2C AUX2%2C OsAUX3%2C AUX3;Oryzabase Gene Name Synonym(s)=like aux1-3%2C related to AUX1-3%2C auxin transporter 2;Note=Auxin influx carrier%2C Regulation of root development%2C Response to aluminium stress;Transcript_evidence=AK111659;ORF_evidence=Q688J2;InterPro=Amino acid transporter%2C transmembrane domain (IPR013057);NIAS_FLcDNA=J013151H06;Manual Curation=November 14%2C 2019;Literature_PMID=30399648;Oryzabase=11918;Expression=AK111659;TENOR=Os05t0447200-01;KEGG=Os05t0447200-01;Subcellular location=plasma membrane (GO:0005886)
Chr05	irgsp1_rep	five_prime_UTR	21931642	21932028	.	-	.	Parent=Os05t0447200-01
Chr05	irgsp1_rep	five_prime_UTR	21931510	21931549	.	-	.	Parent=Os05t0447200-01
Chr05	irgsp1_rep	CDS	21931087	21931509	.	-	0	Parent=Os05t0447200-01
Chr05	irgsp1_rep	CDS	21930607	21930719	.	-	0	Parent=Os05t0447200-01
Chr05	irgsp1_rep	CDS	21930324	21930507	.	-	1	Parent=Os05t0447200-01
Chr05	irgsp1_rep	CDS	21930041	21930138	.	-	0	Parent=Os05t0447200-01
Chr05	irgsp1_rep	CDS	21928176	21928641	.	-	1	Parent=Os05t0447200-01
Chr05	irgsp1_rep	CDS	21927238	21927465	.	-	0	Parent=Os05t0447200-01
Chr05	irgsp1_rep	three_prime_UTR	21926917	21927237	.	-	.	Parent=Os05t0447200-01
Chr05	irgsp1_rep	mRNA	21926917	21931791	.	-	.	ID=Os05t0447200-02;Name=Os05t0447200-02;Locus_id=Os05g0447200;Oryzabase Gene Symbol Synonym(s)=OsLAX3%2C OsRAU3%2C OsAUX2%2C LAX3%2C RAU3%2C AUX2%2C OsAUX3%2C AUX3%2C ARF2;Oryzabase Gene Name Synonym(s)=like aux1-3%2C related to AUX1-3%2C auxin transporter 2;Note=Similar to AUX1-like protein.;Transcript_evidence=AK111849 (DDBJ%2C Best hit);ORF_evidence=B7F409 (UniProt);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=J023145B14;Oryzabase=11918;Expression=AK111849;TENOR=Os05t0447200-02;KEGG=Os05t0447200-02
Chr05	irgsp1_rep	five_prime_UTR	21931642	21931791	.	-	.	Parent=Os05t0447200-02
Chr05	irgsp1_rep	five_prime_UTR	21931510	21931549	.	-	.	Parent=Os05t0447200-02
Chr05	irgsp1_rep	CDS	21931336	21931509	.	-	0	Parent=Os05t0447200-02
Chr05	irgsp1_rep	CDS	21931087	21931272	.	-	0	Parent=Os05t0447200-02
Chr05	irgsp1_rep	CDS	21930607	21930719	.	-	0	Parent=Os05t0447200-02
Chr05	irgsp1_rep	CDS	21930324	21930507	.	-	1	Parent=Os05t0447200-02
Chr05	irgsp1_rep	CDS	21930041	21930138	.	-	0	Parent=Os05t0447200-02
Chr05	irgsp1_rep	CDS	21928176	21928641	.	-	1	Parent=Os05t0447200-02
Chr05	irgsp1_rep	CDS	21927238	21927465	.	-	0	Parent=Os05t0447200-02
Chr05	irgsp1_rep	three_prime_UTR	21926917	21927237	.	-	.	Parent=Os05t0447200-02
Chr05	irgsp1_rep	mRNA	21927237	21931543	.	+	.	ID=Os05t0447250-00;Name=Os05t0447250-00;Locus_id=Os05g0447250;Note=Hypothetical protein.;Transcript_evidence=tplb0034o11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0447250-00
Chr05	irgsp1_rep	five_prime_UTR	21927237	21927237	.	+	.	Parent=Os05t0447250-00
Chr05	irgsp1_rep	CDS	21927238	21927465	.	+	0	Parent=Os05t0447250-00
Chr05	irgsp1_rep	CDS	21928176	21928628	.	+	0	Parent=Os05t0447250-00
Chr05	irgsp1_rep	CDS	21930032	21930070	.	+	0	Parent=Os05t0447250-00
Chr05	irgsp1_rep	three_prime_UTR	21930071	21930132	.	+	.	Parent=Os05t0447250-00
Chr05	irgsp1_rep	three_prime_UTR	21930317	21930503	.	+	.	Parent=Os05t0447250-00
Chr05	irgsp1_rep	three_prime_UTR	21930602	21930719	.	+	.	Parent=Os05t0447250-00
Chr05	irgsp1_rep	three_prime_UTR	21931087	21931270	.	+	.	Parent=Os05t0447250-00
Chr05	irgsp1_rep	three_prime_UTR	21931334	21931543	.	+	.	Parent=Os05t0447250-00
Chr05	irgsp1_rep	mRNA	21943827	21946927	.	-	.	ID=Os05t0447500-00;Name=Os05t0447500-00;Locus_id=Os05g0447500;Oryzabase Gene Symbol Synonym(s)=OsMed13_1%2C Med13_1;Oryzabase Gene Name Synonym(s)=Mediator 13_1;Note=Mediator complex%2C subunit Med13 domain containing protein.;Transcript_evidence=AK370306 (DDBJ);ORF_evidence=B9FPV8 (UniProt);GO=Biological Process: regulation of transcription from RNA polymerase II promoter (GO:0006357),Cellular Component: mediator complex (GO:0016592),Molecular Function: RNA polymerase II transcription cofactor activity (GO:0001104);InterPro=Mediator complex%2C subunit Med13 (IPR009401);Oryzabase=20974;TENOR=Os05t0447500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	21946616	21946927	.	-	0	Parent=Os05t0447500-00
Chr05	irgsp1_rep	CDS	21945006	21946062	.	-	0	Parent=Os05t0447500-00
Chr05	irgsp1_rep	CDS	21944538	21944922	.	-	2	Parent=Os05t0447500-00
Chr05	irgsp1_rep	CDS	21944016	21944016	.	-	1	Parent=Os05t0447500-00
Chr05	irgsp1_rep	three_prime_UTR	21943827	21944015	.	-	.	Parent=Os05t0447500-00
Chr05	irgsp1_rep	mRNA	21944656	21947061	.	+	.	ID=Os05t0447540-00;Name=Os05t0447540-00;Locus_id=Os05g0447540;Note=Hypothetical gene.;Transcript_evidence=EU942785 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0447540-00;KEGG=Os05t0447540-00
Chr05	irgsp1_rep	five_prime_UTR	21944656	21945706	.	+	.	Parent=Os05t0447540-00
Chr05	irgsp1_rep	CDS	21945707	21945937	.	+	0	Parent=Os05t0447540-00
Chr05	irgsp1_rep	three_prime_UTR	21945938	21946079	.	+	.	Parent=Os05t0447540-00
Chr05	irgsp1_rep	three_prime_UTR	21946478	21947061	.	+	.	Parent=Os05t0447540-00
Chr05	irgsp1_rep	mRNA	21953380	21956564	.	-	.	ID=Os05t0447580-00;Name=Os05t0447580-00;Locus_id=Os05g0447580;Oryzabase Gene Symbol Synonym(s)=OsMed13_1%2C Med13_1;Oryzabase Gene Name Synonym(s)=Mediator 13_1;Note=Hypothetical conserved gene.;Transcript_evidence=BT055287 (DDBJ);ORF_evidence=B9FPV8 (UniProt);Oryzabase=20974;TENOR=Os05t0447580-00;KEGG=Os05t0447580-00
Chr05	irgsp1_rep	five_prime_UTR	21956561	21956564	.	-	.	Parent=Os05t0447580-00
Chr05	irgsp1_rep	CDS	21956487	21956560	.	-	0	Parent=Os05t0447580-00
Chr05	irgsp1_rep	CDS	21956247	21956386	.	-	1	Parent=Os05t0447580-00
Chr05	irgsp1_rep	CDS	21956065	21956151	.	-	2	Parent=Os05t0447580-00
Chr05	irgsp1_rep	CDS	21955889	21955976	.	-	2	Parent=Os05t0447580-00
Chr05	irgsp1_rep	CDS	21955719	21955802	.	-	1	Parent=Os05t0447580-00
Chr05	irgsp1_rep	CDS	21955097	21955174	.	-	1	Parent=Os05t0447580-00
Chr05	irgsp1_rep	CDS	21954933	21955012	.	-	1	Parent=Os05t0447580-00
Chr05	irgsp1_rep	CDS	21954024	21954102	.	-	2	Parent=Os05t0447580-00
Chr05	irgsp1_rep	CDS	21953572	21953880	.	-	1	Parent=Os05t0447580-00
Chr05	irgsp1_rep	CDS	21953408	21953498	.	-	1	Parent=Os05t0447580-00
Chr05	irgsp1_rep	three_prime_UTR	21953380	21953407	.	-	.	Parent=Os05t0447580-00
Chr05	irgsp1_rep	mRNA	21959106	21960773	.	-	.	ID=Os05t0447620-00;Name=Os05t0447620-00;Locus_id=Os05g0447620;Oryzabase Gene Symbol Synonym(s)=OsMed13_1%2C Med13_1;Oryzabase Gene Name Synonym(s)=Mediator 13_1;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FPV8 (UniProt);Oryzabase=20974;TENOR=Os05t0447620-00
Chr05	irgsp1_rep	CDS	21960761	21960773	.	-	0	Parent=Os05t0447620-00
Chr05	irgsp1_rep	CDS	21959522	21959974	.	-	2	Parent=Os05t0447620-00
Chr05	irgsp1_rep	CDS	21959106	21959281	.	-	2	Parent=Os05t0447620-00
Chr05	irgsp1_rep	mRNA	21959604	21960249	.	+	.	ID=Os05t0447660-01;Name=Os05t0447660-01;Locus_id=Os05g0447660;Note=Hypothetical conserved gene.;Transcript_evidence=AK240818 (DDBJ%2C Best hit);ORF_evidence=NP_001056288.1 (RefSeq);NIAS_FLcDNA=J065009M24;TENOR=Os05t0447660-01;KEGG=Os05t0447660-01
Chr05	irgsp1_rep	five_prime_UTR	21959604	21959679	.	+	.	Parent=Os05t0447660-01
Chr05	irgsp1_rep	CDS	21959680	21959889	.	+	0	Parent=Os05t0447660-01
Chr05	irgsp1_rep	three_prime_UTR	21959890	21960249	.	+	.	Parent=Os05t0447660-01
Chr05	irgsp1_rep	mRNA	21963794	21966003	.	-	.	ID=Os05t0447700-01;Name=Os05t0447700-01;Locus_id=Os05g0447700;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK072154 (DDBJ%2C Best hit),AK071331 (DDBJ%2C Best hit);ORF_evidence=A2Y583 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026);NIAS_FLcDNA=J013129M13,J023089C14;Expression=AK072154;TENOR=Os05t0447700-01;KEGG=Os05t0447700-01
Chr05	irgsp1_rep	five_prime_UTR	21965905	21966003	.	-	.	Parent=Os05t0447700-01
Chr05	irgsp1_rep	CDS	21964676	21965904	.	-	0	Parent=Os05t0447700-01
Chr05	irgsp1_rep	CDS	21964338	21964563	.	-	1	Parent=Os05t0447700-01
Chr05	irgsp1_rep	three_prime_UTR	21963794	21964337	.	-	.	Parent=Os05t0447700-01
Chr05	irgsp1_rep	mRNA	21970095	21970820	.	+	.	ID=Os05t0447800-00;Name=Os05t0447800-00;Locus_id=Os05g0447800;Note=Similar to H0212B02.6 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q25AL9 (UniProt);InterPro=Protein of unknown function DUF579 (IPR021148);TENOR=Os05t0447800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	21970095	21970820	.	+	0	Parent=Os05t0447800-00
Chr05	irgsp1_rep	mRNA	22005231	22008925	.	+	.	ID=Os05t0448300-01;Name=Os05t0448300-01;Locus_id=Os05g0448300;Oryzabase Gene Symbol Synonym(s)=GPAT;Oryzabase Gene Name Synonym(s)=glycerol-3-phosphate acyltransferase;Note=Similar to glycerol-3-phosphate acyltransferase 8.;Transcript_evidence=AK241033 (DDBJ%2C Best hit);ORF_evidence=B6TCX0 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Phospholipid/glycerol acyltransferase (IPR002123),HAD-like domain (IPR023214);NIAS_FLcDNA=J065058J01;Oryzabase=21986;TENOR=Os05t0448300-01;KEGG=Os05t0448300-01
Chr05	irgsp1_rep	five_prime_UTR	22005231	22005271	.	+	.	Parent=Os05t0448300-01
Chr05	irgsp1_rep	CDS	22005272	22005880	.	+	0	Parent=Os05t0448300-01
Chr05	irgsp1_rep	CDS	22007745	22008596	.	+	0	Parent=Os05t0448300-01
Chr05	irgsp1_rep	three_prime_UTR	22008597	22008925	.	+	.	Parent=Os05t0448300-01
Chr05	irgsp1_rep	mRNA	22029223	22038152	.	+	.	ID=Os05t0448675-00;Name=Os05t0448675-00;Locus_id=Os05g0448675;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FJC1 (UniProt);TENOR=Os05t0448675-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	22029223	22029676	.	+	0	Parent=Os05t0448675-00
Chr05	irgsp1_rep	CDS	22037950	22038152	.	+	2	Parent=Os05t0448675-00
Chr05	irgsp1_rep	mRNA	22030690	22031336	.	+	.	ID=Os05t0448700-01;Name=Os05t0448700-01;Locus_id=Os05g0448700;CGSNL Gene Symbol=ERF85;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 85;Oryzabase Gene Symbol Synonym(s)=OsERF#085%2C OsERF085%2C OsERF85%2C AP2/EREBP#151%2C AP2/EREBP151%2C AP2/EREBP#062%2C AP2/EREBP62;Oryzabase Gene Name Synonym(s)=ethylene response factor 85%2C APETALA2/ethylene-responsive element binding protein 151%2C APETALA2/ethylene-responsive element binding protein 62;Note=Conserved hypothetical protein.;Transcript_evidence=AK063748 (DDBJ%2C Best hit);ORF_evidence=Q75HM3 (UniProt);NIAS_FLcDNA=001-120-G07;Oryzabase=10591;Expression=AK063748;TENOR=Os05t0448700-01;KEGG=Os05t0448700-01
Chr05	irgsp1_rep	five_prime_UTR	22030690	22030771	.	+	.	Parent=Os05t0448700-01
Chr05	irgsp1_rep	CDS	22030772	22031044	.	+	0	Parent=Os05t0448700-01
Chr05	irgsp1_rep	three_prime_UTR	22031045	22031336	.	+	.	Parent=Os05t0448700-01
Chr05	irgsp1_rep	mRNA	22038866	22047589	.	-	.	ID=Os05t0449100-01;Name=Os05t0449100-01;Locus_id=Os05g0449100;Note=Hypothetical protein.;Transcript_evidence=AK109688 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-145-E01;Expression=AK109688;TENOR=Os05t0449100-01;KEGG=Os05t0449100-01
Chr05	irgsp1_rep	five_prime_UTR	22046765	22047589	.	-	.	Parent=Os05t0449100-01
Chr05	irgsp1_rep	five_prime_UTR	22046570	22046675	.	-	.	Parent=Os05t0449100-01
Chr05	irgsp1_rep	five_prime_UTR	22045975	22046048	.	-	.	Parent=Os05t0449100-01
Chr05	irgsp1_rep	five_prime_UTR	22039812	22039875	.	-	.	Parent=Os05t0449100-01
Chr05	irgsp1_rep	CDS	22039527	22039811	.	-	0	Parent=Os05t0449100-01
Chr05	irgsp1_rep	three_prime_UTR	22038866	22039526	.	-	.	Parent=Os05t0449100-01
Chr05	irgsp1_rep	mRNA	22040081	22041963	.	-	.	ID=Os05t0449200-01;Name=Os05t0449200-01;Locus_id=Os05g0449200;Note=Transferase family protein.;Transcript_evidence=AK072009 (DDBJ%2C Best hit),AK107567 (DDBJ%2C Best hit);ORF_evidence=NP_001151798.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J013104O15,002-130-C10;Expression=AK072009;TENOR=Os05t0449200-01;KEGG=Os05t0449200-01
Chr05	irgsp1_rep	five_prime_UTR	22041863	22041963	.	-	.	Parent=Os05t0449200-01
Chr05	irgsp1_rep	CDS	22040420	22041862	.	-	0	Parent=Os05t0449200-01
Chr05	irgsp1_rep	three_prime_UTR	22040081	22040419	.	-	.	Parent=Os05t0449200-01
Chr05	irgsp1_rep	mRNA	22041699	22042052	.	+	.	ID=Os05t0449250-00;Name=Os05t0449250-00;Locus_id=Os05g0449250;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os05t0449250-00
Chr05	irgsp1_rep	CDS	22041699	22042052	.	+	0	Parent=Os05t0449250-00
Chr05	irgsp1_rep	mRNA	22060910	22063720	.	+	.	ID=Os05t0449500-01;Name=Os05t0449500-01;Locus_id=Os05g0449500;RAP-DB Gene Symbol Synonym(s)=OsCOI1b%2C OsCOI1H%2C OsFbox260%2C Os_F0646;RAP-DB Gene Name Synonym(s)=coronatine insensitive 1b%2C F-box protein 260;Oryzabase Gene Symbol Synonym(s)=OsCOI1b%2C COI1b%2C OsCOI1H%2C COI1H%2C OsFbox260%2C Fbox260%2C Os_F0646;Oryzabase Gene Name Synonym(s)=coronatine insensitive 1b%2C F-box protein 260;Note=Component of the SCF E3 ubiquitin ligase complex%2C Jasmonate-regulated defense responses%2C Regulation of leaf senescence;Transcript_evidence=AK101514;ORF_evidence=Q60EH4;GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain (IPR001810),Leucine-rich repeat%2C cysteine-containing subtype (IPR006553);NIAS_FLcDNA=J033046F05;Manual Curation=June 12%2C 2015;Literature_PMID=25146897,23320078,23104764;Oryzabase=10935;Expression=AK101514;TENOR=Os05t0449500-01;KEGG=Os05t0449500-01
Chr05	irgsp1_rep	five_prime_UTR	22060910	22061122	.	+	.	Parent=Os05t0449500-01
Chr05	irgsp1_rep	CDS	22061123	22061634	.	+	0	Parent=Os05t0449500-01
Chr05	irgsp1_rep	CDS	22062051	22062525	.	+	1	Parent=Os05t0449500-01
Chr05	irgsp1_rep	CDS	22062617	22063423	.	+	0	Parent=Os05t0449500-01
Chr05	irgsp1_rep	three_prime_UTR	22063424	22063720	.	+	.	Parent=Os05t0449500-01
Chr05	irgsp1_rep	mRNA	22068489	22071716	.	+	.	ID=Os05t0449600-01;Name=Os05t0449600-01;Locus_id=Os05g0449600;Oryzabase Gene Name Synonym(s)=Beta-D-glucan exohydrolase-like protein;Note=Similar to glycosyl hydrolase family 3 protein.;Transcript_evidence=AK106357 (DDBJ%2C Best hit);ORF_evidence=NP_190284.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 3%2C N-terminal (IPR001764),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 3%2C active site (IPR019800);NIAS_FLcDNA=002-102-A08;Oryzabase=21862;TENOR=Os05t0449600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	22068489	22068546	.	+	.	Parent=Os05t0449600-01
Chr05	irgsp1_rep	CDS	22068547	22068908	.	+	0	Parent=Os05t0449600-01
Chr05	irgsp1_rep	CDS	22069006	22069096	.	+	1	Parent=Os05t0449600-01
Chr05	irgsp1_rep	CDS	22069193	22069341	.	+	0	Parent=Os05t0449600-01
Chr05	irgsp1_rep	CDS	22069424	22069667	.	+	1	Parent=Os05t0449600-01
Chr05	irgsp1_rep	CDS	22069809	22069913	.	+	0	Parent=Os05t0449600-01
Chr05	irgsp1_rep	CDS	22070004	22070009	.	+	0	Parent=Os05t0449600-01
Chr05	irgsp1_rep	three_prime_UTR	22070010	22070169	.	+	.	Parent=Os05t0449600-01
Chr05	irgsp1_rep	three_prime_UTR	22070263	22070464	.	+	.	Parent=Os05t0449600-01
Chr05	irgsp1_rep	three_prime_UTR	22071041	22071716	.	+	.	Parent=Os05t0449600-01
Chr05	irgsp1_rep	mRNA	22071616	22072900	.	+	.	ID=Os05t0449600-02;Name=Os05t0449600-02;Locus_id=Os05g0449600;Oryzabase Gene Name Synonym(s)=Beta-D-glucan exohydrolase-like protein;Note=Hypothetical conserved gene.;Transcript_evidence=AK063607 (DDBJ%2C Best hit);ORF_evidence=Q60EH2 (UniProt);NIAS_FLcDNA=001-118-C11;Oryzabase=21862;Expression=AK063607;TENOR=Os05t0449600-02;KEGG=Os05t0449600-02
Chr05	irgsp1_rep	five_prime_UTR	22071616	22071727	.	+	.	Parent=Os05t0449600-02
Chr05	irgsp1_rep	CDS	22071728	22071961	.	+	0	Parent=Os05t0449600-02
Chr05	irgsp1_rep	three_prime_UTR	22071962	22072900	.	+	.	Parent=Os05t0449600-02
Chr05	irgsp1_rep	mRNA	22068559	22070445	.	-	.	ID=Os05t0449750-00;Name=Os05t0449750-00;Locus_id=Os05g0449750;Note=Hypothetical protein.;Transcript_evidence=tplb0060e05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0449750-00
Chr05	irgsp1_rep	five_prime_UTR	22070351	22070445	.	-	.	Parent=Os05t0449750-00
Chr05	irgsp1_rep	CDS	22070238	22070350	.	-	0	Parent=Os05t0449750-00
Chr05	irgsp1_rep	CDS	22069965	22070145	.	-	1	Parent=Os05t0449750-00
Chr05	irgsp1_rep	three_prime_UTR	22069950	22069964	.	-	.	Parent=Os05t0449750-00
Chr05	irgsp1_rep	three_prime_UTR	22069763	22069873	.	-	.	Parent=Os05t0449750-00
Chr05	irgsp1_rep	three_prime_UTR	22069387	22069624	.	-	.	Parent=Os05t0449750-00
Chr05	irgsp1_rep	three_prime_UTR	22069192	22069301	.	-	.	Parent=Os05t0449750-00
Chr05	irgsp1_rep	three_prime_UTR	22069010	22069095	.	-	.	Parent=Os05t0449750-00
Chr05	irgsp1_rep	three_prime_UTR	22068559	22068918	.	-	.	Parent=Os05t0449750-00
Chr05	irgsp1_rep	mRNA	22081376	22083466	.	-	.	ID=Os05t0449900-01;Name=Os05t0449900-01;Locus_id=Os05g0449900;Note=Homeodomain-like containing protein.;Transcript_evidence=AK068138 (DDBJ%2C Best hit);ORF_evidence=B7ZY89 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),MYB-like (IPR017877),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J013135D01;Expression=AK068138;TENOR=Os05t0449900-01;KEGG=Os05t0449900-01
Chr05	irgsp1_rep	five_prime_UTR	22083073	22083466	.	-	.	Parent=Os05t0449900-01
Chr05	irgsp1_rep	CDS	22082597	22083072	.	-	0	Parent=Os05t0449900-01
Chr05	irgsp1_rep	CDS	22082020	22082491	.	-	1	Parent=Os05t0449900-01
Chr05	irgsp1_rep	three_prime_UTR	22081376	22082019	.	-	.	Parent=Os05t0449900-01
Chr05	irgsp1_rep	mRNA	22122842	22123767	.	+	.	ID=Os05t0450300-01;Name=Os05t0450300-01;Locus_id=Os05g0450300;Note=Conserved hypothetical protein.;Transcript_evidence=AK071191 (DDBJ%2C Best hit);ORF_evidence=B8AYS3 (UniProt);NIAS_FLcDNA=J023084G11;Expression=AK071191;TENOR=Os05t0450300-01;KEGG=Os05t0450300-01
Chr05	irgsp1_rep	five_prime_UTR	22122842	22122876	.	+	.	Parent=Os05t0450300-01
Chr05	irgsp1_rep	CDS	22122877	22123206	.	+	0	Parent=Os05t0450300-01
Chr05	irgsp1_rep	CDS	22123289	22123360	.	+	0	Parent=Os05t0450300-01
Chr05	irgsp1_rep	three_prime_UTR	22123361	22123767	.	+	.	Parent=Os05t0450300-01
Chr05	irgsp1_rep	mRNA	22139970	22142217	.	+	.	ID=Os05t0450600-01;Name=Os05t0450600-01;Locus_id=Os05g0450600;Note=Uncharacterised protein family UPF0503 domain containing protein.;Transcript_evidence=AK064266 (DDBJ%2C Best hit);ORF_evidence=B9FJC3 (UniProt);InterPro=Uncharacterised protein family UPF0503 (IPR008004);NIAS_FLcDNA=002-105-D12;TENOR=Os05t0450600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	22139970	22140166	.	+	.	Parent=Os05t0450600-01
Chr05	irgsp1_rep	CDS	22140167	22140371	.	+	0	Parent=Os05t0450600-01
Chr05	irgsp1_rep	CDS	22140686	22142151	.	+	2	Parent=Os05t0450600-01
Chr05	irgsp1_rep	three_prime_UTR	22142152	22142217	.	+	.	Parent=Os05t0450600-01
Chr05	irgsp1_rep	mRNA	22143664	22145423	.	+	.	ID=Os05t0450733-01;Name=Os05t0450733-01;Locus_id=Os05g0450733;Note=Conserved hypothetical protein.;Transcript_evidence=AK288949 (DDBJ%2C Best hit);ORF_evidence=Q6K2U9 (UniProt);NIAS_FLcDNA=J090083J16;TENOR=Os05t0450733-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	22143664	22144531	.	+	.	Parent=Os05t0450733-01
Chr05	irgsp1_rep	CDS	22144532	22144651	.	+	0	Parent=Os05t0450733-01
Chr05	irgsp1_rep	three_prime_UTR	22144652	22145423	.	+	.	Parent=Os05t0450733-01
Chr05	irgsp1_rep	mRNA	22155979	22159703	.	+	.	ID=Os05t0451100-01;Name=Os05t0451100-01;Locus_id=Os05g0451100;CGSNL Gene Symbol=PT23;CGSNL Gene Name=PHOSPHATE TRANSPORTER 23;Oryzabase Gene Symbol Synonym(s)=OsPT23;Oryzabase Gene Name Synonym(s)=phosphate transporter 23;Note=Major facilitator superfamily protein.;Transcript_evidence=AK120548 (DDBJ%2C Best hit);ORF_evidence=NP_001148061.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J013129N15;Oryzabase=21405;Expression=AK120548;TENOR=Os05t0451100-01;KEGG=Os05t0451100-01
Chr05	irgsp1_rep	five_prime_UTR	22155979	22156312	.	+	.	Parent=Os05t0451100-01
Chr05	irgsp1_rep	CDS	22156313	22156807	.	+	0	Parent=Os05t0451100-01
Chr05	irgsp1_rep	CDS	22157813	22158039	.	+	0	Parent=Os05t0451100-01
Chr05	irgsp1_rep	CDS	22158174	22158522	.	+	1	Parent=Os05t0451100-01
Chr05	irgsp1_rep	CDS	22158609	22158653	.	+	0	Parent=Os05t0451100-01
Chr05	irgsp1_rep	CDS	22158734	22158880	.	+	0	Parent=Os05t0451100-01
Chr05	irgsp1_rep	CDS	22158996	22159133	.	+	0	Parent=Os05t0451100-01
Chr05	irgsp1_rep	CDS	22159271	22159304	.	+	0	Parent=Os05t0451100-01
Chr05	irgsp1_rep	CDS	22159403	22159575	.	+	2	Parent=Os05t0451100-01
Chr05	irgsp1_rep	three_prime_UTR	22159576	22159703	.	+	.	Parent=Os05t0451100-01
Chr05	irgsp1_rep	mRNA	22158119	22159998	.	-	.	ID=Os05t0451200-01;Name=Os05t0451200-01;Locus_id=Os05g0451200;Note=Hypothetical protein.;Transcript_evidence=AK073037 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023150L11;Expression=AK073037;TENOR=Os05t0451200-01;KEGG=Os05t0451200-01
Chr05	irgsp1_rep	five_prime_UTR	22159989	22159998	.	-	.	Parent=Os05t0451200-01
Chr05	irgsp1_rep	CDS	22159817	22159988	.	-	0	Parent=Os05t0451200-01
Chr05	irgsp1_rep	CDS	22159561	22159649	.	-	2	Parent=Os05t0451200-01
Chr05	irgsp1_rep	three_prime_UTR	22158963	22159560	.	-	.	Parent=Os05t0451200-01
Chr05	irgsp1_rep	three_prime_UTR	22158780	22158851	.	-	.	Parent=Os05t0451200-01
Chr05	irgsp1_rep	three_prime_UTR	22158119	22158518	.	-	.	Parent=Os05t0451200-01
Chr05	irgsp1_rep	mRNA	22160242	22162325	.	-	.	ID=Os05t0451300-01;Name=Os05t0451300-01;Locus_id=Os05g0451300;Note=Conserved hypothetical protein.;Transcript_evidence=AK108341 (DDBJ%2C Best hit);ORF_evidence=A2Y599 (UniProt);NIAS_FLcDNA=002-142-A12;Expression=AK108341;TENOR=Os05t0451300-01;KEGG=Os05t0451300-01
Chr05	irgsp1_rep	five_prime_UTR	22162281	22162325	.	-	.	Parent=Os05t0451300-01
Chr05	irgsp1_rep	CDS	22162056	22162280	.	-	0	Parent=Os05t0451300-01
Chr05	irgsp1_rep	CDS	22161849	22161944	.	-	0	Parent=Os05t0451300-01
Chr05	irgsp1_rep	CDS	22160717	22160854	.	-	0	Parent=Os05t0451300-01
Chr05	irgsp1_rep	CDS	22160585	22160626	.	-	0	Parent=Os05t0451300-01
Chr05	irgsp1_rep	three_prime_UTR	22160242	22160584	.	-	.	Parent=Os05t0451300-01
Chr05	irgsp1_rep	mRNA	22184180	22188759	.	+	.	ID=Os05t0451900-01;Name=Os05t0451900-01;Locus_id=Os05g0451900;Oryzabase Gene Symbol Synonym(s)=OsSTA151;Note=Similar to Axi 1 (Auxin-independent growth promoter)-like protein.;Transcript_evidence=AK071872 (DDBJ%2C Best hit);ORF_evidence=Q9FH12 (UniProt);InterPro=GDP-fucose protein O-fucosyltransferase (IPR019378),O-fucosyltransferase%2C plant (IPR024709);NIAS_FLcDNA=J023123J10;Oryzabase=19439;Expression=AK071872;TENOR=Os05t0451900-01;KEGG=Os05t0451900-01
Chr05	irgsp1_rep	five_prime_UTR	22184180	22184411	.	+	.	Parent=Os05t0451900-01
Chr05	irgsp1_rep	five_prime_UTR	22186307	22186321	.	+	.	Parent=Os05t0451900-01
Chr05	irgsp1_rep	CDS	22186322	22186379	.	+	0	Parent=Os05t0451900-01
Chr05	irgsp1_rep	CDS	22186467	22186537	.	+	2	Parent=Os05t0451900-01
Chr05	irgsp1_rep	CDS	22186613	22186701	.	+	0	Parent=Os05t0451900-01
Chr05	irgsp1_rep	CDS	22186784	22186916	.	+	1	Parent=Os05t0451900-01
Chr05	irgsp1_rep	CDS	22187010	22187239	.	+	0	Parent=Os05t0451900-01
Chr05	irgsp1_rep	CDS	22187345	22187821	.	+	1	Parent=Os05t0451900-01
Chr05	irgsp1_rep	CDS	22187894	22188098	.	+	1	Parent=Os05t0451900-01
Chr05	irgsp1_rep	three_prime_UTR	22188099	22188759	.	+	.	Parent=Os05t0451900-01
Chr05	irgsp1_rep	mRNA	22184613	22188116	.	-	.	ID=Os05t0452151-00;Name=Os05t0452151-00;Locus_id=Os05g0452151;Note=Hypothetical protein.;Transcript_evidence=tplb0061b23 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0452151-00
Chr05	irgsp1_rep	five_prime_UTR	22187891	22188116	.	-	.	Parent=Os05t0452151-00
Chr05	irgsp1_rep	five_prime_UTR	22187343	22187818	.	-	.	Parent=Os05t0452151-00
Chr05	irgsp1_rep	five_prime_UTR	22187009	22187237	.	-	.	Parent=Os05t0452151-00
Chr05	irgsp1_rep	five_prime_UTR	22186765	22186915	.	-	.	Parent=Os05t0452151-00
Chr05	irgsp1_rep	five_prime_UTR	22186566	22186686	.	-	.	Parent=Os05t0452151-00
Chr05	irgsp1_rep	CDS	22186564	22186565	.	-	0	Parent=Os05t0452151-00
Chr05	irgsp1_rep	CDS	22186306	22186388	.	-	1	Parent=Os05t0452151-00
Chr05	irgsp1_rep	CDS	22184616	22185130	.	-	2	Parent=Os05t0452151-00
Chr05	irgsp1_rep	three_prime_UTR	22184613	22184615	.	-	.	Parent=Os05t0452151-00
Chr05	irgsp1_rep	mRNA	22193262	22197234	.	+	.	ID=Os05t0452500-01;Name=Os05t0452500-01;Locus_id=Os05g0452500;Note=Conserved hypothetical protein.;Transcript_evidence=AK101053 (DDBJ%2C Best hit);ORF_evidence=B8BGD5 (UniProt);NIAS_FLcDNA=J033015D22;TENOR=Os05t0452500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	22193262	22193364	.	+	.	Parent=Os05t0452500-01
Chr05	irgsp1_rep	five_prime_UTR	22194098	22196773	.	+	.	Parent=Os05t0452500-01
Chr05	irgsp1_rep	CDS	22196774	22196902	.	+	0	Parent=Os05t0452500-01
Chr05	irgsp1_rep	three_prime_UTR	22196903	22197234	.	+	.	Parent=Os05t0452500-01
Chr05	irgsp1_rep	mRNA	22198315	22199542	.	+	.	ID=Os05t0452600-01;Name=Os05t0452600-01;Locus_id=Os05g0452600;Note=Similar to 50S ribosomal protein L33.;Transcript_evidence=AK121541 (DDBJ%2C Best hit);ORF_evidence=C5Z0W6 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L33 (IPR001705),Ribosomal protein%2C zinc-binding domain (IPR011332),Ribosomal protein L33%2C conserved site (IPR018264);NIAS_FLcDNA=J033031N19;Expression=AK121541;TENOR=Os05t0452600-01;KEGG=Os05t0452600-01
Chr05	irgsp1_rep	five_prime_UTR	22198315	22198448	.	+	.	Parent=Os05t0452600-01
Chr05	irgsp1_rep	five_prime_UTR	22198967	22198977	.	+	.	Parent=Os05t0452600-01
Chr05	irgsp1_rep	CDS	22198978	22199151	.	+	0	Parent=Os05t0452600-01
Chr05	irgsp1_rep	three_prime_UTR	22199152	22199542	.	+	.	Parent=Os05t0452600-01
Chr05	irgsp1_rep	mRNA	22208601	22212202	.	+	.	ID=Os05t0452800-01;Name=Os05t0452800-01;Locus_id=Os05g0452800;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK102413 (DDBJ%2C Best hit);ORF_evidence=B6TD58 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-CH-type (IPR011016),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J033093B10;Expression=AK102413;TENOR=Os05t0452800-01;KEGG=Os05t0452800-01
Chr05	irgsp1_rep	five_prime_UTR	22208601	22209005	.	+	.	Parent=Os05t0452800-01
Chr05	irgsp1_rep	five_prime_UTR	22209092	22209096	.	+	.	Parent=Os05t0452800-01
Chr05	irgsp1_rep	CDS	22209097	22209608	.	+	0	Parent=Os05t0452800-01
Chr05	irgsp1_rep	CDS	22211490	22211712	.	+	1	Parent=Os05t0452800-01
Chr05	irgsp1_rep	three_prime_UTR	22211713	22212202	.	+	.	Parent=Os05t0452800-01
Chr05	irgsp1_rep	mRNA	22215726	22219617	.	-	.	ID=Os05t0452900-01;Name=Os05t0452900-01;Locus_id=Os05g0452900;Note=Similar to phosphatidic acid phosphatase-related / PAP2-related.;Transcript_evidence=AK063393 (DDBJ%2C Best hit);ORF_evidence=E5FY32 (UniProt);NIAS_FLcDNA=001-114-H05;Expression=AK063393;TENOR=Os05t0452900-01;KEGG=Os05t0452900-01
Chr05	irgsp1_rep	five_prime_UTR	22219242	22219617	.	-	.	Parent=Os05t0452900-01
Chr05	irgsp1_rep	CDS	22219209	22219241	.	-	0	Parent=Os05t0452900-01
Chr05	irgsp1_rep	CDS	22219008	22219097	.	-	0	Parent=Os05t0452900-01
Chr05	irgsp1_rep	CDS	22217605	22217691	.	-	0	Parent=Os05t0452900-01
Chr05	irgsp1_rep	CDS	22217461	22217529	.	-	0	Parent=Os05t0452900-01
Chr05	irgsp1_rep	CDS	22216669	22216671	.	-	0	Parent=Os05t0452900-01
Chr05	irgsp1_rep	three_prime_UTR	22216602	22216668	.	-	.	Parent=Os05t0452900-01
Chr05	irgsp1_rep	three_prime_UTR	22216386	22216481	.	-	.	Parent=Os05t0452900-01
Chr05	irgsp1_rep	three_prime_UTR	22216260	22216306	.	-	.	Parent=Os05t0452900-01
Chr05	irgsp1_rep	three_prime_UTR	22215726	22216169	.	-	.	Parent=Os05t0452900-01
Chr05	irgsp1_rep	mRNA	22214698	22219616	.	-	.	ID=Os05t0452900-02;Name=Os05t0452900-02;Locus_id=Os05g0452900;Note=Similar to Phosphatidic acid phosphatase-like protein.;Transcript_evidence=AK069695 (DDBJ%2C Best hit),AK104063 (DDBJ%2C Best hit);ORF_evidence=E5FY32 (UniProt);NIAS_FLcDNA=J023026O17,001-025-C09;Expression=AK069695;TENOR=Os05t0452900-02;KEGG=Os05t0452900-02
Chr05	irgsp1_rep	five_prime_UTR	22219242	22219616	.	-	.	Parent=Os05t0452900-02
Chr05	irgsp1_rep	CDS	22219209	22219241	.	-	0	Parent=Os05t0452900-02
Chr05	irgsp1_rep	CDS	22219008	22219097	.	-	0	Parent=Os05t0452900-02
Chr05	irgsp1_rep	CDS	22217605	22217691	.	-	0	Parent=Os05t0452900-02
Chr05	irgsp1_rep	CDS	22217461	22217529	.	-	0	Parent=Os05t0452900-02
Chr05	irgsp1_rep	CDS	22217112	22217192	.	-	0	Parent=Os05t0452900-02
Chr05	irgsp1_rep	CDS	22216962	22217033	.	-	0	Parent=Os05t0452900-02
Chr05	irgsp1_rep	CDS	22216779	22216839	.	-	0	Parent=Os05t0452900-02
Chr05	irgsp1_rep	CDS	22216602	22216704	.	-	2	Parent=Os05t0452900-02
Chr05	irgsp1_rep	CDS	22216386	22216481	.	-	1	Parent=Os05t0452900-02
Chr05	irgsp1_rep	CDS	22216260	22216306	.	-	1	Parent=Os05t0452900-02
Chr05	irgsp1_rep	CDS	22216024	22216169	.	-	2	Parent=Os05t0452900-02
Chr05	irgsp1_rep	CDS	22214944	22215036	.	-	0	Parent=Os05t0452900-02
Chr05	irgsp1_rep	three_prime_UTR	22214698	22214943	.	-	.	Parent=Os05t0452900-02
Chr05	irgsp1_rep	mRNA	22225674	22226711	.	+	.	ID=Os05t0453100-01;Name=Os05t0453100-01;Locus_id=Os05g0453100;Note=Hypothetical protein.;Transcript_evidence=AK110736 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-170-F03;Expression=AK110736;TENOR=Os05t0453100-01;KEGG=Os05t0453100-01
Chr05	irgsp1_rep	five_prime_UTR	22225674	22226075	.	+	.	Parent=Os05t0453100-01
Chr05	irgsp1_rep	CDS	22226076	22226453	.	+	0	Parent=Os05t0453100-01
Chr05	irgsp1_rep	three_prime_UTR	22226454	22226711	.	+	.	Parent=Os05t0453100-01
Chr05	irgsp1_rep	mRNA	22238995	22241632	.	-	.	ID=Os05t0453300-01;Name=Os05t0453300-01;Locus_id=Os05g0453300;Note=Conserved hypothetical protein.;Transcript_evidence=AK072286 (DDBJ%2C Best hit);ORF_evidence=A2Y5A8 (UniProt);NIAS_FLcDNA=J023012O04;TENOR=Os05t0453300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	22241050	22241632	.	-	.	Parent=Os05t0453300-01
Chr05	irgsp1_rep	CDS	22240259	22241049	.	-	0	Parent=Os05t0453300-01
Chr05	irgsp1_rep	CDS	22240050	22240157	.	-	1	Parent=Os05t0453300-01
Chr05	irgsp1_rep	CDS	22239953	22239965	.	-	1	Parent=Os05t0453300-01
Chr05	irgsp1_rep	three_prime_UTR	22238995	22239952	.	-	.	Parent=Os05t0453300-01
Chr05	irgsp1_rep	mRNA	22239477	22241315	.	+	.	ID=Os05t0453401-00;Name=Os05t0453401-00;Locus_id=Os05g0453401;Note=Hypothetical protein.;Transcript_evidence=tplb0058g01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0453401-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	22239477	22239772	.	+	.	Parent=Os05t0453401-00
Chr05	irgsp1_rep	CDS	22239773	22239951	.	+	0	Parent=Os05t0453401-00
Chr05	irgsp1_rep	CDS	22240026	22240160	.	+	1	Parent=Os05t0453401-00
Chr05	irgsp1_rep	CDS	22240263	22240581	.	+	1	Parent=Os05t0453401-00
Chr05	irgsp1_rep	three_prime_UTR	22240582	22240584	.	+	.	Parent=Os05t0453401-00
Chr05	irgsp1_rep	three_prime_UTR	22240668	22241020	.	+	.	Parent=Os05t0453401-00
Chr05	irgsp1_rep	three_prime_UTR	22241091	22241315	.	+	.	Parent=Os05t0453401-00
Chr05	irgsp1_rep	mRNA	22263224	22266786	.	-	.	ID=Os05t0453500-01;Name=Os05t0453500-01;Locus_id=Os05g0453500;Note=Guanylyl cyclase domain containing protein.;Transcript_evidence=AK102175 (DDBJ%2C Best hit);ORF_evidence=Q2EN86 (UniProt);InterPro=Guanylyl cyclase (IPR018616);NIAS_FLcDNA=J033086K19;Expression=AK102175;TENOR=Os05t0453500-01;KEGG=Os05t0453500-01
Chr05	irgsp1_rep	five_prime_UTR	22266551	22266786	.	-	.	Parent=Os05t0453500-01
Chr05	irgsp1_rep	CDS	22266416	22266550	.	-	0	Parent=Os05t0453500-01
Chr05	irgsp1_rep	CDS	22266032	22266196	.	-	0	Parent=Os05t0453500-01
Chr05	irgsp1_rep	three_prime_UTR	22265429	22266031	.	-	.	Parent=Os05t0453500-01
Chr05	irgsp1_rep	three_prime_UTR	22265276	22265350	.	-	.	Parent=Os05t0453500-01
Chr05	irgsp1_rep	three_prime_UTR	22264497	22265178	.	-	.	Parent=Os05t0453500-01
Chr05	irgsp1_rep	three_prime_UTR	22264312	22264384	.	-	.	Parent=Os05t0453500-01
Chr05	irgsp1_rep	three_prime_UTR	22263224	22263915	.	-	.	Parent=Os05t0453500-01
Chr05	irgsp1_rep	mRNA	22276282	22278726	.	+	.	ID=Os05t0453700-01;Name=Os05t0453700-01;Locus_id=Os05g0453700;Note=Similar to USP family protein.;Transcript_evidence=AK073600 (DDBJ%2C Best hit);ORF_evidence=B6TYX3 (UniProt);GO=Biological Process: response to stress (GO:0006950);InterPro=UspA (IPR006016),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J033048I03;Expression=AK073600;TENOR=Os05t0453700-01;KEGG=Os05t0453700-01
Chr05	irgsp1_rep	five_prime_UTR	22276282	22276418	.	+	.	Parent=Os05t0453700-01
Chr05	irgsp1_rep	CDS	22276419	22276611	.	+	0	Parent=Os05t0453700-01
Chr05	irgsp1_rep	CDS	22276709	22276818	.	+	2	Parent=Os05t0453700-01
Chr05	irgsp1_rep	CDS	22276912	22277178	.	+	0	Parent=Os05t0453700-01
Chr05	irgsp1_rep	three_prime_UTR	22277179	22278726	.	+	.	Parent=Os05t0453700-01
Chr05	irgsp1_rep	mRNA	22276284	22278726	.	+	.	ID=Os05t0453700-02;Name=Os05t0453700-02;Locus_id=Os05g0453700;Note=Similar to ENOD18 protein (Fragment).;Transcript_evidence=AK063881 (DDBJ%2C Best hit);ORF_evidence=B7EME6 (UniProt);GO=Biological Process: response to stress (GO:0006950);InterPro=Universal stress protein A (IPR006015),UspA (IPR006016),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=001-122-F08;Expression=AK063881;TENOR=Os05t0453700-02;KEGG=Os05t0453700-02
Chr05	irgsp1_rep	five_prime_UTR	22276284	22276418	.	+	.	Parent=Os05t0453700-02
Chr05	irgsp1_rep	CDS	22276419	22276611	.	+	0	Parent=Os05t0453700-02
Chr05	irgsp1_rep	CDS	22276709	22276818	.	+	2	Parent=Os05t0453700-02
Chr05	irgsp1_rep	CDS	22276912	22277030	.	+	0	Parent=Os05t0453700-02
Chr05	irgsp1_rep	CDS	22278450	22278525	.	+	1	Parent=Os05t0453700-02
Chr05	irgsp1_rep	three_prime_UTR	22278526	22278726	.	+	.	Parent=Os05t0453700-02
Chr05	irgsp1_rep	mRNA	22281707	22283290	.	+	.	ID=Os05t0453900-00;Name=Os05t0453900-00;Locus_id=Os05g0453900;CGSNL Gene Symbol=PSF1;CGSNL Gene Name=PARTNER OF SLD FIVE 1;Oryzabase Gene Symbol Synonym(s)=PSF1;Oryzabase Gene Name Synonym(s)=partner of Sld five 1;Note=Similar to DNA replication complex GINS protein PSF1.;Transcript_evidence=BT060471 (DDBJ);ORF_evidence=NP_001149745.1 (RefSeq);InterPro=GINS complex%2C subunit Psf1 (IPR005339),GINS complex (IPR021151);Oryzabase=7452;TENOR=Os05t0453900-00;KEGG=Os05t0453900-00
Chr05	irgsp1_rep	five_prime_UTR	22281707	22281713	.	+	.	Parent=Os05t0453900-00
Chr05	irgsp1_rep	CDS	22281714	22281788	.	+	0	Parent=Os05t0453900-00
Chr05	irgsp1_rep	CDS	22282278	22282345	.	+	0	Parent=Os05t0453900-00
Chr05	irgsp1_rep	CDS	22282547	22282660	.	+	1	Parent=Os05t0453900-00
Chr05	irgsp1_rep	CDS	22282775	22282937	.	+	1	Parent=Os05t0453900-00
Chr05	irgsp1_rep	CDS	22283014	22283160	.	+	0	Parent=Os05t0453900-00
Chr05	irgsp1_rep	CDS	22283238	22283264	.	+	0	Parent=Os05t0453900-00
Chr05	irgsp1_rep	three_prime_UTR	22283265	22283290	.	+	.	Parent=Os05t0453900-00
Chr05	irgsp1_rep	mRNA	22293498	22297207	.	+	.	ID=Os05t0454200-01;Name=Os05t0454200-01;Locus_id=Os05g0454200;RAP-DB Gene Symbol Synonym(s)=BGL%2C OsRopGEF10%2C bgl;RAP-DB Gene Name Synonym(s)=BRIGHT GREEN LEAF%2C bright green leaf%2C guanine nucleotide exchange factor for Rop 10;CGSNL Gene Symbol=BGL;CGSNL Gene Name=BRIGHT GREEN LEAF;Oryzabase Gene Symbol Synonym(s)=bgl%2C OsRopGEF10%2C Os RopGEF10%2C RopGEF10;Oryzabase Gene Name Synonym(s)=bright green leaf%2C guanine nucleotide exchange factor for Rop 10%2C GEF for ROP 10%2C Rop-specific GEF10%2C Rop-specific guanine nucleotide exchange factor 10;Note=Guanine nucleotide exchange factors for Rop%2C Activation of small cuticular papillae development on leaf epidermis;Transcript_evidence=AK101945;ORF_evidence=Q6I638;GO=Molecular Function: Rho guanyl-nucleotide exchange factor activity (GO:0005089);InterPro=PRONE domain (IPR005512);NIAS_FLcDNA=J033074L17;Manual Curation=May 8%2C 2017;Literature_PMID=22038138;Oryzabase=681;Expression=AK101945;TENOR=Os05t0454200-01;KEGG=Os05t0454200-01;Subcellular location=plasma membrane (GO:0005886)
Chr05	irgsp1_rep	five_prime_UTR	22293498	22293740	.	+	.	Parent=Os05t0454200-01
Chr05	irgsp1_rep	CDS	22293741	22294053	.	+	0	Parent=Os05t0454200-01
Chr05	irgsp1_rep	CDS	22294134	22294250	.	+	2	Parent=Os05t0454200-01
Chr05	irgsp1_rep	CDS	22294342	22294496	.	+	2	Parent=Os05t0454200-01
Chr05	irgsp1_rep	CDS	22295133	22295207	.	+	0	Parent=Os05t0454200-01
Chr05	irgsp1_rep	CDS	22295325	22295615	.	+	0	Parent=Os05t0454200-01
Chr05	irgsp1_rep	CDS	22296088	22296438	.	+	0	Parent=Os05t0454200-01
Chr05	irgsp1_rep	CDS	22296536	22296940	.	+	0	Parent=Os05t0454200-01
Chr05	irgsp1_rep	three_prime_UTR	22296941	22297207	.	+	.	Parent=Os05t0454200-01
Chr05	irgsp1_rep	mRNA	22299581	22300044	.	+	.	ID=Os05t0454400-01;Name=Os05t0454400-01;Locus_id=Os05g0454400;Note=Conserved hypothetical protein.;Transcript_evidence=AK107942 (DDBJ%2C Best hit);ORF_evidence=Q6I637 (UniProt);NIAS_FLcDNA=002-135-B02;TENOR=Os05t0454400-01
Chr05	irgsp1_rep	five_prime_UTR	22299581	22299632	.	+	.	Parent=Os05t0454400-01
Chr05	irgsp1_rep	CDS	22299633	22300044	.	+	0	Parent=Os05t0454400-01
Chr05	irgsp1_rep	mRNA	22303574	22306360	.	-	.	ID=Os05t0454500-01;Name=Os05t0454500-01;Locus_id=Os05g0454500;Note=Conserved hypothetical protein.;Transcript_evidence=AK121844 (DDBJ%2C Best hit);ORF_evidence=B8AYT4 (UniProt);NIAS_FLcDNA=J033101G01;Expression=AK121844;TENOR=Os05t0454500-01;KEGG=Os05t0454500-01
Chr05	irgsp1_rep	five_prime_UTR	22306140	22306360	.	-	.	Parent=Os05t0454500-01
Chr05	irgsp1_rep	CDS	22306041	22306139	.	-	0	Parent=Os05t0454500-01
Chr05	irgsp1_rep	CDS	22305689	22305776	.	-	0	Parent=Os05t0454500-01
Chr05	irgsp1_rep	CDS	22305187	22305356	.	-	2	Parent=Os05t0454500-01
Chr05	irgsp1_rep	CDS	22305039	22305099	.	-	0	Parent=Os05t0454500-01
Chr05	irgsp1_rep	CDS	22304939	22304955	.	-	2	Parent=Os05t0454500-01
Chr05	irgsp1_rep	three_prime_UTR	22304904	22304938	.	-	.	Parent=Os05t0454500-01
Chr05	irgsp1_rep	three_prime_UTR	22303574	22303805	.	-	.	Parent=Os05t0454500-01
Chr05	irgsp1_rep	mRNA	22317539	22321473	.	-	.	ID=Os05t0454800-00;Name=Os05t0454800-00;Locus_id=Os05g0454800;Note=Similar to CBL-interacting protein kinase 6.;Transcript_evidence=BT054895 (DDBJ);ORF_evidence=Q6Z9F4 (UniProt);TENOR=Os05t0454800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	22321200	22321473	.	-	.	Parent=Os05t0454800-00
Chr05	irgsp1_rep	CDS	22321060	22321199	.	-	0	Parent=Os05t0454800-00
Chr05	irgsp1_rep	CDS	22317565	22317829	.	-	1	Parent=Os05t0454800-00
Chr05	irgsp1_rep	three_prime_UTR	22317539	22317564	.	-	.	Parent=Os05t0454800-00
Chr05	irgsp1_rep	mRNA	22354150	22358544	.	+	.	ID=Os05t0455200-01;Name=Os05t0455200-01;Locus_id=Os05g0455200;RAP-DB Gene Symbol Synonym(s)=RI%2C SH5;RAP-DB Gene Name Synonym(s)=verticillate rachis%2C Shattering-5;CGSNL Gene Symbol=SH5;CGSNL Gene Name=SHATTERING 5;Oryzabase Gene Symbol Synonym(s)=RI%2C OsRI;Oryzabase Gene Name Synonym(s)=Shattering-5%2C erticillate rachis;Note=BELL1-type homeodomain transcription factor%2C Initiation and maintenance of the shoot apical meristem during embryogenesis%2C Construction of inflorescence architecture%2C Modulation of seed shattering;Transcript_evidence=AK100916;ORF_evidence=Q60EM7;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Homeobox-like domain superfamily (IPR009057),POX domain (IPR006563),Homeobox domain (IPR001356),Homeobox KN domain (IPR008422);NIAS_FLcDNA=J023133E06;Manual Curation=May 10%2C 2019;Literature_PMID=30657229,24923192;Oryzabase=6818;Expression=AK100916;TENOR=Os05t0455200-01;KEGG=Os05t0455200-01
Chr05	irgsp1_rep	five_prime_UTR	22354150	22354467	.	+	.	Parent=Os05t0455200-01
Chr05	irgsp1_rep	CDS	22354468	22355187	.	+	0	Parent=Os05t0455200-01
Chr05	irgsp1_rep	CDS	22355921	22356291	.	+	0	Parent=Os05t0455200-01
Chr05	irgsp1_rep	CDS	22357437	22357497	.	+	1	Parent=Os05t0455200-01
Chr05	irgsp1_rep	CDS	22357642	22358232	.	+	0	Parent=Os05t0455200-01
Chr05	irgsp1_rep	three_prime_UTR	22358233	22358544	.	+	.	Parent=Os05t0455200-01
Chr05	irgsp1_rep	mRNA	22358063	22358564	.	+	.	ID=Os05t0455200-02;Name=Os05t0455200-02;Locus_id=Os05g0455200;CGSNL Gene Symbol=SH5;CGSNL Gene Name=SHATTERING 5;Oryzabase Gene Symbol Synonym(s)=RI%2C OsRI;Oryzabase Gene Name Synonym(s)=Shattering-5%2C erticillate rachis;Note=Similar to QSH-1.;Transcript_evidence=AK063788 (DDBJ%2C Best hit);ORF_evidence=D4QFI4 (UniProt);NIAS_FLcDNA=001-121-E02;Oryzabase=6818;Expression=AK063788;TENOR=Os05t0455200-02;KEGG=Os05t0455200-02
Chr05	irgsp1_rep	five_prime_UTR	22358063	22358064	.	+	.	Parent=Os05t0455200-02
Chr05	irgsp1_rep	CDS	22358065	22358232	.	+	0	Parent=Os05t0455200-02
Chr05	irgsp1_rep	three_prime_UTR	22358233	22358564	.	+	.	Parent=Os05t0455200-02
Chr05	irgsp1_rep	mRNA	22354394	22358551	.	-	.	ID=Os05t0455250-00;Name=Os05t0455250-00;Locus_id=Os05g0455250;Note=Hypothetical protein.;Transcript_evidence=tplb0024p20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0455250-00
Chr05	irgsp1_rep	five_prime_UTR	22357616	22358551	.	-	.	Parent=Os05t0455250-00
Chr05	irgsp1_rep	five_prime_UTR	22355914	22356328	.	-	.	Parent=Os05t0455250-00
Chr05	irgsp1_rep	five_prime_UTR	22354712	22355175	.	-	.	Parent=Os05t0455250-00
Chr05	irgsp1_rep	CDS	22354403	22354711	.	-	0	Parent=Os05t0455250-00
Chr05	irgsp1_rep	three_prime_UTR	22354394	22354402	.	-	.	Parent=Os05t0455250-00
Chr05	irgsp1_rep	mRNA	22371227	22373519	.	+	.	ID=Os05t0455400-01;Name=Os05t0455400-01;Locus_id=Os05g0455400;CGSNL Gene Symbol=BHLH58;CGSNL Gene Name=BASIC HELIX-LOOP-HELIX PROTEIN 58;Oryzabase Gene Symbol Synonym(s)=OsbHLH058%2C bHLH058%2C bHLH58%2C OsPRI2%2C PRI2;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 058%2C POSITIVE REGULATOR OF IRON HOMEOSTASIS 2;Note=Similar to DNA binding protein.;Transcript_evidence=AK063498 (DDBJ%2C Best hit);ORF_evidence=B6SST8 (UniProt);NIAS_FLcDNA=001-116-D07;Manual Curation=November 6%2C 2019;Oryzabase=15348;TENOR=Os05t0455400-01
Chr05	irgsp1_rep	five_prime_UTR	22371227	22371490	.	+	.	Parent=Os05t0455400-01
Chr05	irgsp1_rep	five_prime_UTR	22372796	22372927	.	+	.	Parent=Os05t0455400-01
Chr05	irgsp1_rep	five_prime_UTR	22373013	22373078	.	+	.	Parent=Os05t0455400-01
Chr05	irgsp1_rep	CDS	22373079	22373312	.	+	0	Parent=Os05t0455400-01
Chr05	irgsp1_rep	three_prime_UTR	22373313	22373519	.	+	.	Parent=Os05t0455400-01
Chr05	irgsp1_rep	mRNA	22371205	22373569	.	+	.	ID=Os05t0455400-02;Name=Os05t0455400-02;Locus_id=Os05g0455400;RAP-DB Gene Symbol Synonym(s)=OsbHLH58%2C OsPRI2;RAP-DB Gene Name Synonym(s)=POSITIVE REGULATOR OF IRON DEFICIENCY RESPONSE 2;CGSNL Gene Symbol=BHLH58;CGSNL Gene Name=BASIC HELIX-LOOP-HELIX PROTEIN 58;Oryzabase Gene Symbol Synonym(s)=OsbHLH058%2C bHLH058%2C bHLH58%2C OsPRI2%2C PRI2;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 058%2C POSITIVE REGULATOR OF IRON HOMEOSTASIS 2;Note=Basic helix-loop-helix (bHLH) protein%2C Maintenance of Fe homeostasis;Transcript_evidence=Inferred from literature;ORF_evidence=I1PW90 (Oryza glaberrima);GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Helix-loop-helix DNA-binding domain superfamily (IPR036638),Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);Manual Curation=November 6%2C 2019;Literature_PMID=31674679;Oryzabase=15348
Chr05	irgsp1_rep	five_prime_UTR	22371205	22371471	.	+	.	Parent=Os05t0455400-02
Chr05	irgsp1_rep	CDS	22371472	22371587	.	+	0	Parent=Os05t0455400-02
Chr05	irgsp1_rep	CDS	22371673	22371747	.	+	1	Parent=Os05t0455400-02
Chr05	irgsp1_rep	CDS	22372592	22372669	.	+	1	Parent=Os05t0455400-02
Chr05	irgsp1_rep	CDS	22372765	22372927	.	+	1	Parent=Os05t0455400-02
Chr05	irgsp1_rep	CDS	22373013	22373312	.	+	0	Parent=Os05t0455400-02
Chr05	irgsp1_rep	three_prime_UTR	22373313	22373569	.	+	.	Parent=Os05t0455400-02
Chr05	irgsp1_rep	mRNA	22376072	22380820	.	-	.	ID=Os05t0455500-01;Name=Os05t0455500-01;Locus_id=Os05g0455500;CGSNL Gene Symbol=P5CS;CGSNL Gene Name=P5C SYNTHETASE;Oryzabase Gene Symbol Synonym(s)=OsP5CS%2C P5CS1%2C OsP5CS1%2C OsALDH18B1%2C ALDH18B1%2C OsP5CS-1%2C P5CS-1;Oryzabase Gene Name Synonym(s)=delta1-pyrroline-5-carboxylate synthetase%2C Delta-1-pyrroline-5-carboxylate synthetase%2C pyrroline-5-carboxylate synthetase%2C proline carboxylate synthase 1%2C Aldehyde dehydrogenase 18B1;Note=Similar to Delta-1-pyrroline-5-carboxylate synthetase.;Transcript_evidence=AK101985 (DDBJ%2C Best hit);ORF_evidence=O04226 (UniProt);GO=Biological Process: proline biosynthetic process (GO:0006561),Biological Process: metabolic process (GO:0008152),Biological Process: cellular amino acid biosynthetic process (GO:0008652),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: cytoplasm (GO:0005737),Molecular Function: catalytic activity (GO:0003824),Molecular Function: glutamate 5-kinase activity (GO:0004349),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620);InterPro=Aspartate/glutamate/uridylate kinase (IPR001048),Glutamate/acetylglutamate kinase (IPR001057),Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase (IPR005715),Delta l-pyrroline-5-carboxylate synthetase (IPR005766),Aldehyde dehydrogenase domain (IPR015590),Aldehyde/histidinol dehydrogenase (IPR016161),Aldehyde dehydrogenase%2C N-terminal (IPR016162),Aldehyde dehydrogenase%2C C-terminal (IPR016163),Glutamate 5-kinase%2C conserved site (IPR019797);NIAS_FLcDNA=J033078N24;Oryzabase=6251;TENOR=Os05t0455500-01
Chr05	irgsp1_rep	five_prime_UTR	22380704	22380820	.	-	.	Parent=Os05t0455500-01
Chr05	irgsp1_rep	CDS	22380644	22380703	.	-	0	Parent=Os05t0455500-01
Chr05	irgsp1_rep	CDS	22379779	22379850	.	-	0	Parent=Os05t0455500-01
Chr05	irgsp1_rep	CDS	22379470	22379676	.	-	0	Parent=Os05t0455500-01
Chr05	irgsp1_rep	CDS	22379218	22379379	.	-	0	Parent=Os05t0455500-01
Chr05	irgsp1_rep	CDS	22378756	22379033	.	-	0	Parent=Os05t0455500-01
Chr05	irgsp1_rep	CDS	22378044	22378194	.	-	1	Parent=Os05t0455500-01
Chr05	irgsp1_rep	CDS	22377741	22377905	.	-	0	Parent=Os05t0455500-01
Chr05	irgsp1_rep	CDS	22377551	22377628	.	-	0	Parent=Os05t0455500-01
Chr05	irgsp1_rep	CDS	22377336	22377425	.	-	0	Parent=Os05t0455500-01
Chr05	irgsp1_rep	CDS	22377162	22377248	.	-	0	Parent=Os05t0455500-01
Chr05	irgsp1_rep	CDS	22376991	22377077	.	-	0	Parent=Os05t0455500-01
Chr05	irgsp1_rep	CDS	22376822	22376918	.	-	0	Parent=Os05t0455500-01
Chr05	irgsp1_rep	CDS	22376612	22376715	.	-	2	Parent=Os05t0455500-01
Chr05	irgsp1_rep	CDS	22376072	22376136	.	-	0	Parent=Os05t0455500-01
Chr05	irgsp1_rep	mRNA	22374029	22380819	.	-	.	ID=Os05t0455500-02;Name=Os05t0455500-02;Locus_id=Os05g0455500;CGSNL Gene Symbol=P5CS;CGSNL Gene Name=P5C SYNTHETASE;Oryzabase Gene Symbol Synonym(s)=OsP5CS%2C P5CS1%2C OsP5CS1%2C OsALDH18B1%2C ALDH18B1%2C OsP5CS-1%2C P5CS-1;Oryzabase Gene Name Synonym(s)=delta1-pyrroline-5-carboxylate synthetase%2C Delta-1-pyrroline-5-carboxylate synthetase%2C pyrroline-5-carboxylate synthetase%2C proline carboxylate synthase 1%2C Aldehyde dehydrogenase 18B1;Note=Similar to Delta 1-pyrroline-5-carboxylate synthetase (P5CS).;Transcript_evidence=AK102633 (DDBJ%2C Best hit);ORF_evidence=O04226 (UniProt);GO=Biological Process: proline biosynthetic process (GO:0006561),Biological Process: metabolic process (GO:0008152),Biological Process: cellular amino acid biosynthetic process (GO:0008652),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: cytoplasm (GO:0005737),Molecular Function: catalytic activity (GO:0003824),Molecular Function: glutamate 5-kinase activity (GO:0004349),Molecular Function: glutamate-5-semialdehyde dehydrogenase activity (GO:0004350),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620);InterPro=Gamma-glutamyl phosphate reductase GPR (IPR000965),Aspartate/glutamate/uridylate kinase (IPR001048),Glutamate/acetylglutamate kinase (IPR001057),Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase (IPR005715),Delta l-pyrroline-5-carboxylate synthetase (IPR005766),Aldehyde dehydrogenase domain (IPR015590),Aldehyde/histidinol dehydrogenase (IPR016161),Aldehyde dehydrogenase%2C N-terminal (IPR016162),Aldehyde dehydrogenase%2C C-terminal (IPR016163),Glutamate 5-kinase%2C conserved site (IPR019797),Gamma-glutamyl phosphate reductase GPR%2C conserved site (IPR020593);NIAS_FLcDNA=J033099M14;Oryzabase=6251;Expression=AK102633;TENOR=Os05t0455500-02;KEGG=Os05t0455500-02 (EC:1.2.1.41%2C EC:2.7.2.11)
Chr05	irgsp1_rep	five_prime_UTR	22380704	22380819	.	-	.	Parent=Os05t0455500-02
Chr05	irgsp1_rep	CDS	22380644	22380703	.	-	0	Parent=Os05t0455500-02
Chr05	irgsp1_rep	CDS	22379779	22379850	.	-	0	Parent=Os05t0455500-02
Chr05	irgsp1_rep	CDS	22379470	22379676	.	-	0	Parent=Os05t0455500-02
Chr05	irgsp1_rep	CDS	22379218	22379379	.	-	0	Parent=Os05t0455500-02
Chr05	irgsp1_rep	CDS	22378756	22379033	.	-	0	Parent=Os05t0455500-02
Chr05	irgsp1_rep	CDS	22378044	22378194	.	-	1	Parent=Os05t0455500-02
Chr05	irgsp1_rep	CDS	22377741	22377905	.	-	0	Parent=Os05t0455500-02
Chr05	irgsp1_rep	CDS	22377551	22377628	.	-	0	Parent=Os05t0455500-02
Chr05	irgsp1_rep	CDS	22377336	22377425	.	-	0	Parent=Os05t0455500-02
Chr05	irgsp1_rep	CDS	22377162	22377248	.	-	0	Parent=Os05t0455500-02
Chr05	irgsp1_rep	CDS	22376991	22377077	.	-	0	Parent=Os05t0455500-02
Chr05	irgsp1_rep	CDS	22376822	22376918	.	-	0	Parent=Os05t0455500-02
Chr05	irgsp1_rep	CDS	22376612	22376715	.	-	2	Parent=Os05t0455500-02
Chr05	irgsp1_rep	CDS	22376061	22376136	.	-	0	Parent=Os05t0455500-02
Chr05	irgsp1_rep	CDS	22375522	22375672	.	-	2	Parent=Os05t0455500-02
Chr05	irgsp1_rep	CDS	22375341	22375409	.	-	1	Parent=Os05t0455500-02
Chr05	irgsp1_rep	CDS	22375138	22375204	.	-	1	Parent=Os05t0455500-02
Chr05	irgsp1_rep	CDS	22374997	22375067	.	-	0	Parent=Os05t0455500-02
Chr05	irgsp1_rep	CDS	22374753	22374831	.	-	1	Parent=Os05t0455500-02
Chr05	irgsp1_rep	three_prime_UTR	22374751	22374752	.	-	.	Parent=Os05t0455500-02
Chr05	irgsp1_rep	three_prime_UTR	22374029	22374524	.	-	.	Parent=Os05t0455500-02
Chr05	irgsp1_rep	mRNA	22384138	22387806	.	+	.	ID=Os05t0455600-01;Name=Os05t0455600-01;Locus_id=Os05g0455600;Note=Prenylated rab acceptor PRA1 family protein.;Transcript_evidence=AK060152 (DDBJ%2C Best hit);ORF_evidence=B4G0F8 (UniProt);InterPro=Prenylated rab acceptor PRA1 (IPR004895);NIAS_FLcDNA=006-310-E07;Expression=AK060152;TENOR=Os05t0455600-01;KEGG=Os05t0455600-01
Chr05	irgsp1_rep	five_prime_UTR	22384138	22384383	.	+	.	Parent=Os05t0455600-01
Chr05	irgsp1_rep	CDS	22384384	22384541	.	+	0	Parent=Os05t0455600-01
Chr05	irgsp1_rep	CDS	22385983	22386023	.	+	1	Parent=Os05t0455600-01
Chr05	irgsp1_rep	CDS	22386101	22386179	.	+	2	Parent=Os05t0455600-01
Chr05	irgsp1_rep	CDS	22386716	22386802	.	+	1	Parent=Os05t0455600-01
Chr05	irgsp1_rep	CDS	22386895	22386983	.	+	1	Parent=Os05t0455600-01
Chr05	irgsp1_rep	CDS	22387079	22387150	.	+	2	Parent=Os05t0455600-01
Chr05	irgsp1_rep	CDS	22387240	22387343	.	+	2	Parent=Os05t0455600-01
Chr05	irgsp1_rep	three_prime_UTR	22387344	22387344	.	+	.	Parent=Os05t0455600-01
Chr05	irgsp1_rep	three_prime_UTR	22387485	22387806	.	+	.	Parent=Os05t0455600-01
Chr05	irgsp1_rep	mRNA	22384219	22387782	.	+	.	ID=Os05t0455600-02;Name=Os05t0455600-02;Locus_id=Os05g0455600;Note=Prenylated rab acceptor PRA1 family protein.;Transcript_evidence=AK105995 (DDBJ%2C Best hit),AK103269 (DDBJ%2C Best hit);ORF_evidence=B4G0F8 (UniProt);InterPro=Prenylated rab acceptor PRA1 (IPR004895);NIAS_FLcDNA=001-205-H05,J033124H03;Expression=AK105995;TENOR=Os05t0455600-02;KEGG=Os05t0455600-02
Chr05	irgsp1_rep	five_prime_UTR	22384219	22384383	.	+	.	Parent=Os05t0455600-02
Chr05	irgsp1_rep	CDS	22384384	22384541	.	+	0	Parent=Os05t0455600-02
Chr05	irgsp1_rep	CDS	22385983	22386023	.	+	1	Parent=Os05t0455600-02
Chr05	irgsp1_rep	CDS	22386101	22386179	.	+	2	Parent=Os05t0455600-02
Chr05	irgsp1_rep	CDS	22386716	22386802	.	+	1	Parent=Os05t0455600-02
Chr05	irgsp1_rep	CDS	22386895	22386983	.	+	1	Parent=Os05t0455600-02
Chr05	irgsp1_rep	CDS	22387079	22387150	.	+	2	Parent=Os05t0455600-02
Chr05	irgsp1_rep	CDS	22387240	22387343	.	+	2	Parent=Os05t0455600-02
Chr05	irgsp1_rep	three_prime_UTR	22387344	22387344	.	+	.	Parent=Os05t0455600-02
Chr05	irgsp1_rep	three_prime_UTR	22387485	22387782	.	+	.	Parent=Os05t0455600-02
Chr05	irgsp1_rep	mRNA	22388034	22392458	.	-	.	ID=Os05t0455700-01;Name=Os05t0455700-01;Locus_id=Os05g0455700;Note=Phosphoribosyltransferase domain containing protein.;Transcript_evidence=AK060610 (DDBJ%2C Best hit);ORF_evidence=B4FR28 (UniProt);GO=Biological Process: uracil salvage (GO:0006223),Biological Process: nucleoside metabolic process (GO:0009116),Molecular Function: uracil phosphoribosyltransferase activity (GO:0004845);InterPro=Phosphoribosyltransferase (IPR000836),Uracil phosphoribosyl transferase (IPR005765);NIAS_FLcDNA=001-025-D08;Expression=AK060610;TENOR=Os05t0455700-01;KEGG=Os05t0455700-01 (EC:2.4.2.9)
Chr05	irgsp1_rep	five_prime_UTR	22392365	22392458	.	-	.	Parent=Os05t0455700-01
Chr05	irgsp1_rep	CDS	22392092	22392364	.	-	0	Parent=Os05t0455700-01
Chr05	irgsp1_rep	CDS	22391873	22391951	.	-	0	Parent=Os05t0455700-01
Chr05	irgsp1_rep	CDS	22391587	22391645	.	-	2	Parent=Os05t0455700-01
Chr05	irgsp1_rep	CDS	22391133	22391210	.	-	0	Parent=Os05t0455700-01
Chr05	irgsp1_rep	CDS	22390964	22391045	.	-	0	Parent=Os05t0455700-01
Chr05	irgsp1_rep	CDS	22390312	22390360	.	-	2	Parent=Os05t0455700-01
Chr05	irgsp1_rep	CDS	22389858	22389919	.	-	1	Parent=Os05t0455700-01
Chr05	irgsp1_rep	CDS	22388898	22388965	.	-	2	Parent=Os05t0455700-01
Chr05	irgsp1_rep	CDS	22388631	22388686	.	-	0	Parent=Os05t0455700-01
Chr05	irgsp1_rep	CDS	22388488	22388535	.	-	1	Parent=Os05t0455700-01
Chr05	irgsp1_rep	CDS	22388321	22388372	.	-	1	Parent=Os05t0455700-01
Chr05	irgsp1_rep	three_prime_UTR	22388034	22388320	.	-	.	Parent=Os05t0455700-01
Chr05	irgsp1_rep	mRNA	22387970	22392431	.	-	.	ID=Os05t0455700-02;Name=Os05t0455700-02;Locus_id=Os05g0455700;Note=Phosphoribosyltransferase domain containing protein.;Transcript_evidence=AK099158 (DDBJ%2C Best hit),AK070824 (DDBJ%2C Best hit);ORF_evidence=B4FR28 (UniProt);GO=Biological Process: uracil salvage (GO:0006223),Biological Process: nucleoside metabolic process (GO:0009116),Molecular Function: uracil phosphoribosyltransferase activity (GO:0004845);InterPro=Phosphoribosyltransferase (IPR000836),Uracil phosphoribosyl transferase (IPR005765);NIAS_FLcDNA=J023069E05,J023069E03;Expression=AK099158;TENOR=Os05t0455700-02;KEGG=Os05t0455700-02 (EC:2.4.2.9)
Chr05	irgsp1_rep	five_prime_UTR	22392365	22392431	.	-	.	Parent=Os05t0455700-02
Chr05	irgsp1_rep	CDS	22392092	22392364	.	-	0	Parent=Os05t0455700-02
Chr05	irgsp1_rep	CDS	22391873	22391951	.	-	0	Parent=Os05t0455700-02
Chr05	irgsp1_rep	CDS	22391587	22391645	.	-	2	Parent=Os05t0455700-02
Chr05	irgsp1_rep	CDS	22391133	22391210	.	-	0	Parent=Os05t0455700-02
Chr05	irgsp1_rep	CDS	22390964	22391045	.	-	0	Parent=Os05t0455700-02
Chr05	irgsp1_rep	CDS	22390312	22390360	.	-	2	Parent=Os05t0455700-02
Chr05	irgsp1_rep	CDS	22389858	22389919	.	-	1	Parent=Os05t0455700-02
Chr05	irgsp1_rep	CDS	22388898	22388965	.	-	2	Parent=Os05t0455700-02
Chr05	irgsp1_rep	CDS	22388631	22388686	.	-	0	Parent=Os05t0455700-02
Chr05	irgsp1_rep	CDS	22388488	22388535	.	-	1	Parent=Os05t0455700-02
Chr05	irgsp1_rep	CDS	22388321	22388372	.	-	1	Parent=Os05t0455700-02
Chr05	irgsp1_rep	three_prime_UTR	22387970	22388320	.	-	.	Parent=Os05t0455700-02
Chr05	irgsp1_rep	mRNA	22393979	22397062	.	+	.	ID=Os05t0455800-01;Name=Os05t0455800-01;Locus_id=Os05g0455800;Note=Yip1 domain containing protein.;Transcript_evidence=AK064864 (DDBJ%2C Best hit);ORF_evidence=NP_850322.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Yip1 domain (IPR006977);NIAS_FLcDNA=J013000I06;Expression=AK064864;TENOR=Os05t0455800-01;KEGG=Os05t0455800-01
Chr05	irgsp1_rep	five_prime_UTR	22393979	22394108	.	+	.	Parent=Os05t0455800-01
Chr05	irgsp1_rep	CDS	22394109	22394162	.	+	0	Parent=Os05t0455800-01
Chr05	irgsp1_rep	CDS	22394266	22394311	.	+	0	Parent=Os05t0455800-01
Chr05	irgsp1_rep	CDS	22394405	22394503	.	+	2	Parent=Os05t0455800-01
Chr05	irgsp1_rep	CDS	22395324	22395483	.	+	2	Parent=Os05t0455800-01
Chr05	irgsp1_rep	CDS	22396004	22396274	.	+	1	Parent=Os05t0455800-01
Chr05	irgsp1_rep	CDS	22396441	22396632	.	+	0	Parent=Os05t0455800-01
Chr05	irgsp1_rep	three_prime_UTR	22396633	22396655	.	+	.	Parent=Os05t0455800-01
Chr05	irgsp1_rep	three_prime_UTR	22396824	22397062	.	+	.	Parent=Os05t0455800-01
Chr05	irgsp1_rep	mRNA	22398040	22403954	.	+	.	ID=Os05t0455900-01;Name=Os05t0455900-01;Locus_id=Os05g0455900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK102806 (DDBJ%2C Best hit);ORF_evidence=A2Y5C6 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033108H24;Expression=AK102806;TENOR=Os05t0455900-01;KEGG=Os05t0455900-01
Chr05	irgsp1_rep	five_prime_UTR	22398040	22398138	.	+	.	Parent=Os05t0455900-01
Chr05	irgsp1_rep	CDS	22398139	22400763	.	+	0	Parent=Os05t0455900-01
Chr05	irgsp1_rep	three_prime_UTR	22400764	22401441	.	+	.	Parent=Os05t0455900-01
Chr05	irgsp1_rep	three_prime_UTR	22402756	22402901	.	+	.	Parent=Os05t0455900-01
Chr05	irgsp1_rep	three_prime_UTR	22403007	22403057	.	+	.	Parent=Os05t0455900-01
Chr05	irgsp1_rep	three_prime_UTR	22403148	22403226	.	+	.	Parent=Os05t0455900-01
Chr05	irgsp1_rep	three_prime_UTR	22403308	22403610	.	+	.	Parent=Os05t0455900-01
Chr05	irgsp1_rep	three_prime_UTR	22403694	22403954	.	+	.	Parent=Os05t0455900-01
Chr05	irgsp1_rep	mRNA	22404538	22406227	.	-	.	ID=Os05t0456000-01;Name=Os05t0456000-01;Locus_id=Os05g0456000;Note=Mitochondrial glycoprotein family protein.;Transcript_evidence=AK102036 (DDBJ%2C Best hit),AK058420 (DDBJ%2C Best hit);ORF_evidence=A2Y5C7 (UniProt);GO=Cellular Component: mitochondrial matrix (GO:0005759);InterPro=Mitochondrial glycoprotein (IPR003428);NIAS_FLcDNA=J033081C21,001-015-D08;Expression=AK102036;TENOR=Os05t0456000-01;KEGG=Os05t0456000-01
Chr05	irgsp1_rep	five_prime_UTR	22406219	22406227	.	-	.	Parent=Os05t0456000-01
Chr05	irgsp1_rep	CDS	22405970	22406218	.	-	0	Parent=Os05t0456000-01
Chr05	irgsp1_rep	CDS	22404891	22405258	.	-	0	Parent=Os05t0456000-01
Chr05	irgsp1_rep	CDS	22404645	22404804	.	-	1	Parent=Os05t0456000-01
Chr05	irgsp1_rep	three_prime_UTR	22404538	22404644	.	-	.	Parent=Os05t0456000-01
Chr05	irgsp1_rep	mRNA	22406443	22412412	.	+	.	ID=Os05t0456100-01;Name=Os05t0456100-01;Locus_id=Os05g0456100;Note=Similar to Aldose reductase ALDRXV4.;Transcript_evidence=AK099824 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013102F11;Expression=AK099824;TENOR=Os05t0456100-01;KEGG=Os05t0456100-01
Chr05	irgsp1_rep	five_prime_UTR	22406443	22406557	.	+	.	Parent=Os05t0456100-01
Chr05	irgsp1_rep	five_prime_UTR	22406822	22407071	.	+	.	Parent=Os05t0456100-01
Chr05	irgsp1_rep	CDS	22407072	22407419	.	+	0	Parent=Os05t0456100-01
Chr05	irgsp1_rep	three_prime_UTR	22407420	22407799	.	+	.	Parent=Os05t0456100-01
Chr05	irgsp1_rep	three_prime_UTR	22408595	22408655	.	+	.	Parent=Os05t0456100-01
Chr05	irgsp1_rep	three_prime_UTR	22408767	22409892	.	+	.	Parent=Os05t0456100-01
Chr05	irgsp1_rep	three_prime_UTR	22410224	22410339	.	+	.	Parent=Os05t0456100-01
Chr05	irgsp1_rep	three_prime_UTR	22410508	22410864	.	+	.	Parent=Os05t0456100-01
Chr05	irgsp1_rep	three_prime_UTR	22412086	22412412	.	+	.	Parent=Os05t0456100-01
Chr05	irgsp1_rep	mRNA	22409213	22410426	.	+	.	ID=Os05t0456100-02;Name=Os05t0456100-02;Locus_id=Os05g0456100;Note=Non-protein coding transcript.;Transcript_evidence=AK107446 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-128-B11;TENOR=Os05t0456100-02
Chr05	irgsp1_rep	exon	22409213	22410426	.	+	.	Parent=Os05t0456100-02
Chr05	irgsp1_rep	mRNA	22407153	22409001	.	-	.	ID=Os05t0456200-00;Name=Os05t0456200-00;Locus_id=Os05g0456200;Note=Similar to Aldose reductase.;Transcript_evidence=ab initio prediction;ORF_evidence=B6THE1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldo/keto reductase (IPR001395),Aldo/keto reductase%2C conserved site (IPR018170),Aldo/keto reductase subgroup (IPR020471),NADP-dependent oxidoreductase domain (IPR023210);TENOR=Os05t0456200-00
Chr05	irgsp1_rep	CDS	22408891	22409001	.	-	0	Parent=Os05t0456200-00
Chr05	irgsp1_rep	CDS	22408564	22408614	.	-	0	Parent=Os05t0456200-00
Chr05	irgsp1_rep	CDS	22407581	22407853	.	-	0	Parent=Os05t0456200-00
Chr05	irgsp1_rep	CDS	22407153	22407446	.	-	0	Parent=Os05t0456200-00
Chr05	irgsp1_rep	mRNA	22410041	22413310	.	-	.	ID=Os05t0456300-01;Name=Os05t0456300-01;Locus_id=Os05g0456300;Oryzabase Gene Symbol Synonym(s)=AKR4C15;Oryzabase Gene Name Synonym(s)=Aldo-Keto Reductase 4 subfamily C member 15%2C Aldo-Keto Reductase 4C15;Note=Aldose reductase.;Transcript_evidence=AK106126 (DDBJ%2C Best hit);ORF_evidence=B7ZXZ2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldo/keto reductase (IPR001395),Aldo/keto reductase%2C conserved site (IPR018170),Aldo/keto reductase subgroup (IPR020471),NADP-dependent oxidoreductase domain (IPR023210);NIAS_FLcDNA=001-207-F04;Oryzabase=21905;Expression=AK106126;TENOR=Os05t0456300-01;KEGG=Os05t0456300-01 (EC:1.1.1.2)
Chr05	irgsp1_rep	five_prime_UTR	22413266	22413310	.	-	.	Parent=Os05t0456300-01
Chr05	irgsp1_rep	CDS	22413113	22413265	.	-	0	Parent=Os05t0456300-01
Chr05	irgsp1_rep	CDS	22412937	22412987	.	-	0	Parent=Os05t0456300-01
Chr05	irgsp1_rep	CDS	22412766	22412842	.	-	0	Parent=Os05t0456300-01
Chr05	irgsp1_rep	CDS	22412559	22412646	.	-	1	Parent=Os05t0456300-01
Chr05	irgsp1_rep	CDS	22412061	22412333	.	-	0	Parent=Os05t0456300-01
Chr05	irgsp1_rep	CDS	22410494	22410748	.	-	0	Parent=Os05t0456300-01
Chr05	irgsp1_rep	CDS	22410289	22410372	.	-	0	Parent=Os05t0456300-01
Chr05	irgsp1_rep	three_prime_UTR	22410041	22410288	.	-	.	Parent=Os05t0456300-01
Chr05	irgsp1_rep	mRNA	22409907	22413263	.	-	.	ID=Os05t0456300-02;Name=Os05t0456300-02;Locus_id=Os05g0456300;Oryzabase Gene Symbol Synonym(s)=AKR4C15;Oryzabase Gene Name Synonym(s)=Aldo-Keto Reductase 4 subfamily C member 15%2C Aldo-Keto Reductase 4C15;Note=Similar to cDNA clone:001-207-F04%2C full insert sequence.;Transcript_evidence=AK068616 (DDBJ%2C Best hit),AK061843 (DDBJ%2C Best hit);ORF_evidence=B7EYZ0 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldo/keto reductase (IPR001395),Aldo/keto reductase%2C conserved site (IPR018170),Aldo/keto reductase subgroup (IPR020471),NADP-dependent oxidoreductase domain (IPR023210);NIAS_FLcDNA=J013156J23,001-040-E07;Oryzabase=21905;TENOR=Os05t0456300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	22413263	22413263	.	-	.	Parent=Os05t0456300-02
Chr05	irgsp1_rep	CDS	22413113	22413262	.	-	0	Parent=Os05t0456300-02
Chr05	irgsp1_rep	CDS	22412937	22412987	.	-	0	Parent=Os05t0456300-02
Chr05	irgsp1_rep	CDS	22412766	22412842	.	-	0	Parent=Os05t0456300-02
Chr05	irgsp1_rep	CDS	22412559	22412646	.	-	1	Parent=Os05t0456300-02
Chr05	irgsp1_rep	CDS	22412061	22412333	.	-	0	Parent=Os05t0456300-02
Chr05	irgsp1_rep	CDS	22410494	22410748	.	-	0	Parent=Os05t0456300-02
Chr05	irgsp1_rep	CDS	22410289	22410372	.	-	0	Parent=Os05t0456300-02
Chr05	irgsp1_rep	three_prime_UTR	22409907	22410288	.	-	.	Parent=Os05t0456300-02
Chr05	irgsp1_rep	mRNA	22424694	22425869	.	-	.	ID=Os05t0456401-00;Name=Os05t0456401-00;Locus_id=Os05g0456401;Note=Hypothetical gene.;Transcript_evidence=CT833571 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os05t0456401-00;KEGG=Os05t0456401-00
Chr05	irgsp1_rep	five_prime_UTR	22425864	22425869	.	-	.	Parent=Os05t0456401-00
Chr05	irgsp1_rep	CDS	22425408	22425863	.	-	0	Parent=Os05t0456401-00
Chr05	irgsp1_rep	three_prime_UTR	22424694	22425407	.	-	.	Parent=Os05t0456401-00
Chr05	irgsp1_rep	mRNA	22425364	22427412	.	+	.	ID=Os05t0456500-01;Name=Os05t0456500-01;Locus_id=Os05g0456500;Note=Uncharacterised protein family UPF0497%2C trans-membrane plant domain containing protein.;Transcript_evidence=AK103232 (DDBJ%2C Best hit);ORF_evidence=B8AYU8 (UniProt);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);NIAS_FLcDNA=J033123E09;Expression=AK103232;TENOR=Os05t0456500-01;KEGG=Os05t0456500-01
Chr05	irgsp1_rep	five_prime_UTR	22425364	22425560	.	+	.	Parent=Os05t0456500-01
Chr05	irgsp1_rep	CDS	22425561	22425694	.	+	0	Parent=Os05t0456500-01
Chr05	irgsp1_rep	CDS	22426435	22426567	.	+	1	Parent=Os05t0456500-01
Chr05	irgsp1_rep	CDS	22427069	22427269	.	+	0	Parent=Os05t0456500-01
Chr05	irgsp1_rep	three_prime_UTR	22427270	22427412	.	+	.	Parent=Os05t0456500-01
Chr05	irgsp1_rep	mRNA	22426969	22427480	.	+	.	ID=Os05t0456500-02;Name=Os05t0456500-02;Locus_id=Os05g0456500;Note=Similar to predicted protein.;Transcript_evidence=AK059391 (DDBJ%2C Best hit);ORF_evidence=Q60EL5 (UniProt);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);NIAS_FLcDNA=001-026-H07;Expression=AK059391;TENOR=Os05t0456500-02;KEGG=Os05t0456500-02
Chr05	irgsp1_rep	five_prime_UTR	22426969	22427062	.	+	.	Parent=Os05t0456500-02
Chr05	irgsp1_rep	CDS	22427063	22427269	.	+	0	Parent=Os05t0456500-02
Chr05	irgsp1_rep	three_prime_UTR	22427270	22427480	.	+	.	Parent=Os05t0456500-02
Chr05	irgsp1_rep	mRNA	22435844	22438310	.	+	.	ID=Os05t0456800-01;Name=Os05t0456800-01;Locus_id=Os05g0456800;Note=Hypothetical gene.;Transcript_evidence=AK287427 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J043009M17;TENOR=Os05t0456800-01;KEGG=Os05t0456800-01
Chr05	irgsp1_rep	CDS	22435844	22436071	.	+	0	Parent=Os05t0456800-01
Chr05	irgsp1_rep	three_prime_UTR	22436072	22438310	.	+	.	Parent=Os05t0456800-01
Chr05	irgsp1_rep	mRNA	22436486	22437469	.	-	.	ID=Os05t0456900-01;Name=Os05t0456900-01;Locus_id=Os05g0456900;Note=Conserved hypothetical protein.;Transcript_evidence=AK073249 (DDBJ%2C Best hit);ORF_evidence=B8AYV0 (UniProt);NIAS_FLcDNA=J033023G20;Expression=AK073249;TENOR=Os05t0456900-01;KEGG=Os05t0456900-01
Chr05	irgsp1_rep	five_prime_UTR	22437151	22437469	.	-	.	Parent=Os05t0456900-01
Chr05	irgsp1_rep	CDS	22436878	22437150	.	-	0	Parent=Os05t0456900-01
Chr05	irgsp1_rep	three_prime_UTR	22436486	22436877	.	-	.	Parent=Os05t0456900-01
Chr05	irgsp1_rep	mRNA	22440910	22445473	.	-	.	ID=Os05t0456925-00;Name=Os05t0456925-00;Locus_id=Os05g0456925;Note=Similar to regulator of Chromosome condensation (RCC1) family protein.;Transcript_evidence=AK358131 (DDBJ);ORF_evidence=NP_191117.1 (RefSeq);InterPro=Regulator of Chromosome condensation%2C RCC1 (IPR000408),Regulator of Chromosome condensation/beta-lactamase-inhibitor protein II (IPR009091);TENOR=Os05t0456925-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	22445372	22445473	.	-	.	Parent=Os05t0456925-00
Chr05	irgsp1_rep	CDS	22445134	22445371	.	-	0	Parent=Os05t0456925-00
Chr05	irgsp1_rep	CDS	22444317	22444390	.	-	2	Parent=Os05t0456925-00
Chr05	irgsp1_rep	CDS	22444139	22444223	.	-	0	Parent=Os05t0456925-00
Chr05	irgsp1_rep	CDS	22443936	22444061	.	-	2	Parent=Os05t0456925-00
Chr05	irgsp1_rep	CDS	22443598	22443834	.	-	2	Parent=Os05t0456925-00
Chr05	irgsp1_rep	CDS	22443268	22443501	.	-	2	Parent=Os05t0456925-00
Chr05	irgsp1_rep	CDS	22442740	22442783	.	-	2	Parent=Os05t0456925-00
Chr05	irgsp1_rep	CDS	22441598	22441780	.	-	0	Parent=Os05t0456925-00
Chr05	irgsp1_rep	CDS	22441356	22441446	.	-	0	Parent=Os05t0456925-00
Chr05	irgsp1_rep	CDS	22441113	22441156	.	-	2	Parent=Os05t0456925-00
Chr05	irgsp1_rep	CDS	22440912	22441034	.	-	0	Parent=Os05t0456925-00
Chr05	irgsp1_rep	three_prime_UTR	22440910	22440911	.	-	.	Parent=Os05t0456925-00
Chr05	irgsp1_rep	mRNA	22440910	22445467	.	+	.	ID=Os05t0456962-00;Name=Os05t0456962-00;Locus_id=Os05g0456962;Note=Hypothetical protein.;Transcript_evidence=tplb0026h15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0456962-00
Chr05	irgsp1_rep	five_prime_UTR	22440910	22441052	.	+	.	Parent=Os05t0456962-00
Chr05	irgsp1_rep	five_prime_UTR	22441328	22441446	.	+	.	Parent=Os05t0456962-00
Chr05	irgsp1_rep	five_prime_UTR	22441598	22441802	.	+	.	Parent=Os05t0456962-00
Chr05	irgsp1_rep	five_prime_UTR	22443252	22443501	.	+	.	Parent=Os05t0456962-00
Chr05	irgsp1_rep	five_prime_UTR	22443598	22443844	.	+	.	Parent=Os05t0456962-00
Chr05	irgsp1_rep	five_prime_UTR	22443945	22444058	.	+	.	Parent=Os05t0456962-00
Chr05	irgsp1_rep	five_prime_UTR	22444135	22444207	.	+	.	Parent=Os05t0456962-00
Chr05	irgsp1_rep	CDS	22444208	22444218	.	+	0	Parent=Os05t0456962-00
Chr05	irgsp1_rep	CDS	22444313	22444378	.	+	1	Parent=Os05t0456962-00
Chr05	irgsp1_rep	CDS	22445124	22445467	.	+	1	Parent=Os05t0456962-00
Chr05	irgsp1_rep	mRNA	22448151	22450166	.	+	.	ID=Os05t0457000-01;Name=Os05t0457000-01;Locus_id=Os05g0457000;Note=CytoChrome c oxidase%2C subunit VIIa domain containing protein.;Transcript_evidence=AK110966 (DDBJ%2C Best hit);ORF_evidence=A2Y5D3 (UniProt);GO=Cellular Component: mitochondrial respiratory chain (GO:0005746),Molecular Function: cytoChrome-c oxidase activity (GO:0004129),Molecular Function: electron carrier activity (GO:0009055);InterPro=CytoChrome c oxidase%2C subunit VIIa (IPR003177);NIAS_FLcDNA=002-174-B06;TENOR=Os05t0457000-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	22448151	22448219	.	+	.	Parent=Os05t0457000-01
Chr05	irgsp1_rep	CDS	22448220	22448480	.	+	0	Parent=Os05t0457000-01
Chr05	irgsp1_rep	three_prime_UTR	22448481	22450166	.	+	.	Parent=Os05t0457000-01
Chr05	irgsp1_rep	mRNA	22450771	22452631	.	-	.	ID=Os05t0457200-01;Name=Os05t0457200-01;Locus_id=Os05g0457200;Oryzabase Gene Symbol Synonym(s)=OsPP2C49%2C PP2C49%2C OsPP76;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C49%2C protein phosphatase 2C 49%2C protein phosphatase 76;Note=Similar to protein phosphatase 2C.;Transcript_evidence=AK242098 (DDBJ%2C Best hit);ORF_evidence=NP_001149037.1 (RefSeq);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J075143H11;Oryzabase=17878;TENOR=Os05t0457200-01;KEGG=Os05t0457200-01
Chr05	irgsp1_rep	five_prime_UTR	22452403	22452631	.	-	.	Parent=Os05t0457200-01
Chr05	irgsp1_rep	CDS	22451944	22452402	.	-	0	Parent=Os05t0457200-01
Chr05	irgsp1_rep	three_prime_UTR	22451531	22451943	.	-	.	Parent=Os05t0457200-01
Chr05	irgsp1_rep	three_prime_UTR	22451351	22451456	.	-	.	Parent=Os05t0457200-01
Chr05	irgsp1_rep	three_prime_UTR	22450771	22451260	.	-	.	Parent=Os05t0457200-01
Chr05	irgsp1_rep	mRNA	22450870	22452294	.	+	.	ID=Os05t0457300-00;Name=Os05t0457300-00;Locus_id=Os05g0457300;Note=Hypothetical gene.;Transcript_evidence=BT086014 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0457300-00
Chr05	irgsp1_rep	five_prime_UTR	22450870	22451845	.	+	.	Parent=Os05t0457300-00
Chr05	irgsp1_rep	CDS	22451846	22452294	.	+	0	Parent=Os05t0457300-00
Chr05	irgsp1_rep	mRNA	22455564	22457259	.	+	.	ID=Os05t0457501-00;Name=Os05t0457501-00;Locus_id=Os05g0457501;Note=Non-protein coding transcript.;Transcript_evidence=BT018987 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0457501-00
Chr05	irgsp1_rep	exon	22455564	22455604	.	+	.	Parent=Os05t0457501-00
Chr05	irgsp1_rep	exon	22455779	22456012	.	+	.	Parent=Os05t0457501-00
Chr05	irgsp1_rep	exon	22457189	22457259	.	+	.	Parent=Os05t0457501-00
Chr05	irgsp1_rep	mRNA	22464519	22466117	.	+	.	ID=Os05t0457600-00;Name=Os05t0457600-00;Locus_id=Os05g0457600;CGSNL Gene Symbol=DUF668-9;CGSNL Gene Name=DUF668 FAMILY MEMBER 9;Oryzabase Gene Symbol Synonym(s)=OsDUF668-9;Oryzabase Gene Name Synonym(s)=DUF668 family member 9;Note=Similar to Avr9/Cf-9 rapidly elicited protein 137.;Transcript_evidence=AK362599 (DDBJ);ORF_evidence=B4FAJ5 (UniProt);InterPro=Protein of unknown function DUF668 (IPR007700),Protein of unknown function DUF3475 (IPR021864);Oryzabase=23485;TENOR=Os05t0457600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	22464519	22464540	.	+	.	Parent=Os05t0457600-00
Chr05	irgsp1_rep	CDS	22464541	22466046	.	+	0	Parent=Os05t0457600-00
Chr05	irgsp1_rep	three_prime_UTR	22466047	22466117	.	+	.	Parent=Os05t0457600-00
Chr05	irgsp1_rep	mRNA	22468094	22472057	.	-	.	ID=Os05t0457700-01;Name=Os05t0457700-01;Locus_id=Os05g0457700;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK106240 (DDBJ%2C Best hit);ORF_evidence=B8AZ32 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-100-C10;Expression=AK106240;TENOR=Os05t0457700-01;KEGG=Os05t0457700-01
Chr05	irgsp1_rep	five_prime_UTR	22471962	22472057	.	-	.	Parent=Os05t0457700-01
Chr05	irgsp1_rep	CDS	22471790	22471961	.	-	0	Parent=Os05t0457700-01
Chr05	irgsp1_rep	CDS	22471573	22471687	.	-	2	Parent=Os05t0457700-01
Chr05	irgsp1_rep	CDS	22471073	22471140	.	-	1	Parent=Os05t0457700-01
Chr05	irgsp1_rep	CDS	22470476	22470522	.	-	2	Parent=Os05t0457700-01
Chr05	irgsp1_rep	CDS	22470252	22470399	.	-	0	Parent=Os05t0457700-01
Chr05	irgsp1_rep	CDS	22470108	22470167	.	-	2	Parent=Os05t0457700-01
Chr05	irgsp1_rep	CDS	22469828	22470026	.	-	2	Parent=Os05t0457700-01
Chr05	irgsp1_rep	CDS	22469602	22469663	.	-	1	Parent=Os05t0457700-01
Chr05	irgsp1_rep	CDS	22469405	22469505	.	-	2	Parent=Os05t0457700-01
Chr05	irgsp1_rep	CDS	22469107	22469161	.	-	0	Parent=Os05t0457700-01
Chr05	irgsp1_rep	CDS	22468985	22469032	.	-	2	Parent=Os05t0457700-01
Chr05	irgsp1_rep	CDS	22468194	22468369	.	-	2	Parent=Os05t0457700-01
Chr05	irgsp1_rep	three_prime_UTR	22468094	22468193	.	-	.	Parent=Os05t0457700-01
Chr05	irgsp1_rep	mRNA	22481303	22484417	.	+	.	ID=Os05t0457800-01;Name=Os05t0457800-01;Locus_id=Os05g0457800;Oryzabase Gene Symbol Synonym(s)=GPAT%2C OsGPAT;Oryzabase Gene Name Synonym(s)=glycerol-3-phosphate acyltransferase;Note=Similar to Glycerol-3-phosphate acyltransferase 5 (EC 2.3.1.15) (AtGPAT5).;Transcript_evidence=AK241469 (DDBJ%2C Best hit);ORF_evidence=B6SWK2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Phospholipid/glycerol acyltransferase (IPR002123);NIAS_FLcDNA=J065165A03;Oryzabase=21982;TENOR=Os05t0457800-01;KEGG=Os05t0457800-01 (EC:2.3.1.15)
Chr05	irgsp1_rep	five_prime_UTR	22481303	22481728	.	+	.	Parent=Os05t0457800-01
Chr05	irgsp1_rep	CDS	22481729	22482343	.	+	0	Parent=Os05t0457800-01
Chr05	irgsp1_rep	CDS	22483268	22484221	.	+	0	Parent=Os05t0457800-01
Chr05	irgsp1_rep	three_prime_UTR	22484222	22484417	.	+	.	Parent=Os05t0457800-01
Chr05	irgsp1_rep	mRNA	22481577	22484543	.	+	.	ID=Os05t0457800-02;Name=Os05t0457800-02;Locus_id=Os05g0457800;Oryzabase Gene Symbol Synonym(s)=GPAT%2C OsGPAT;Oryzabase Gene Name Synonym(s)=glycerol-3-phosphate acyltransferase;Note=Similar to Glycerol-3-phosphate acyltransferase 5 (EC 2.3.1.15) (AtGPAT5).;Transcript_evidence=AK289263 (DDBJ%2C Best hit);ORF_evidence=B6SWK2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Phospholipid/glycerol acyltransferase (IPR002123);NIAS_FLcDNA=J100087J09;Oryzabase=21982;TENOR=Os05t0457800-02;KEGG=Os05t0457800-02 (EC:2.3.1.15)
Chr05	irgsp1_rep	five_prime_UTR	22481577	22481728	.	+	.	Parent=Os05t0457800-02
Chr05	irgsp1_rep	CDS	22481729	22482343	.	+	0	Parent=Os05t0457800-02
Chr05	irgsp1_rep	CDS	22483268	22484221	.	+	0	Parent=Os05t0457800-02
Chr05	irgsp1_rep	three_prime_UTR	22484222	22484543	.	+	.	Parent=Os05t0457800-02
Chr05	irgsp1_rep	mRNA	22488533	22492117	.	+	.	ID=Os05t0458000-01;Name=Os05t0458000-01;Locus_id=Os05g0458000;Note=Zinc finger%2C DHHC-type domain containing protein.;Transcript_evidence=AK060188 (DDBJ%2C Best hit);ORF_evidence=NP_001149040.1 (RefSeq);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C DHHC-type%2C palmitoyltransferase (IPR001594);NIAS_FLcDNA=001-001-D10;Expression=AK060188;TENOR=Os05t0458000-01;KEGG=Os05t0458000-01
Chr05	irgsp1_rep	five_prime_UTR	22488533	22488737	.	+	.	Parent=Os05t0458000-01
Chr05	irgsp1_rep	CDS	22488738	22489010	.	+	0	Parent=Os05t0458000-01
Chr05	irgsp1_rep	CDS	22490035	22490127	.	+	0	Parent=Os05t0458000-01
Chr05	irgsp1_rep	CDS	22490206	22490307	.	+	0	Parent=Os05t0458000-01
Chr05	irgsp1_rep	CDS	22490391	22490468	.	+	0	Parent=Os05t0458000-01
Chr05	irgsp1_rep	CDS	22490580	22490678	.	+	0	Parent=Os05t0458000-01
Chr05	irgsp1_rep	CDS	22490975	22491070	.	+	0	Parent=Os05t0458000-01
Chr05	irgsp1_rep	CDS	22491466	22491576	.	+	0	Parent=Os05t0458000-01
Chr05	irgsp1_rep	three_prime_UTR	22491577	22492117	.	+	.	Parent=Os05t0458000-01
Chr05	irgsp1_rep	mRNA	22488607	22492092	.	+	.	ID=Os05t0458000-02;Name=Os05t0458000-02;Locus_id=Os05g0458000;Note=Zinc finger%2C DHHC-type domain containing protein.;Transcript_evidence=AK068989 (DDBJ%2C Best hit);ORF_evidence=NP_001149040.1 (RefSeq);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C DHHC-type%2C palmitoyltransferase (IPR001594);NIAS_FLcDNA=J023002F22;Expression=AK068989;TENOR=Os05t0458000-02;KEGG=Os05t0458000-02
Chr05	irgsp1_rep	five_prime_UTR	22488607	22488737	.	+	.	Parent=Os05t0458000-02
Chr05	irgsp1_rep	CDS	22488738	22489010	.	+	0	Parent=Os05t0458000-02
Chr05	irgsp1_rep	CDS	22490035	22490127	.	+	0	Parent=Os05t0458000-02
Chr05	irgsp1_rep	CDS	22490206	22490307	.	+	0	Parent=Os05t0458000-02
Chr05	irgsp1_rep	CDS	22490391	22490468	.	+	0	Parent=Os05t0458000-02
Chr05	irgsp1_rep	CDS	22490580	22490678	.	+	0	Parent=Os05t0458000-02
Chr05	irgsp1_rep	CDS	22490975	22491070	.	+	0	Parent=Os05t0458000-02
Chr05	irgsp1_rep	CDS	22491466	22491576	.	+	0	Parent=Os05t0458000-02
Chr05	irgsp1_rep	three_prime_UTR	22491577	22491611	.	+	.	Parent=Os05t0458000-02
Chr05	irgsp1_rep	three_prime_UTR	22491712	22492092	.	+	.	Parent=Os05t0458000-02
Chr05	irgsp1_rep	mRNA	22492473	22494991	.	-	.	ID=Os05t0458100-01;Name=Os05t0458100-01;Locus_id=Os05g0458100;CGSNL Gene Symbol=FKBP20-1A;CGSNL Gene Name=FK506 BINDING PROTEIN 20-1A;Oryzabase Gene Symbol Synonym(s)=OsFKBP20-1a%2C OsFKBP20;Oryzabase Gene Name Synonym(s)=FK506 binding protein 20-1a%2C FK506-binding protein 20;Note=Similar to FK506-binding protein 4 (EC 5.2.1.8) (Peptidyl-prolyl cis-trans isomerase) (PPIase) (Rotamase) (p59 protein) (HSP binding immunophilin) (HBI) (FKBP52 protein) (52 kDa FK506 binding protein) (FKBP59).;Transcript_evidence=AK101652 (DDBJ%2C Best hit),AK059467 (DDBJ%2C Best hit),AK061127 (DDBJ%2C Best hit);ORF_evidence=Q84LW7 (UniProt);GO=Biological Process: protein folding (GO:0006457);InterPro=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type%2C domain (IPR001179),Peptidyl-prolyl cis-trans isomerase%2C FKBP-type (IPR023566);NIAS_FLcDNA=J033057B20,001-028-D09,006-207-H01;Oryzabase=10036;TENOR=Os05t0458100-01
Chr05	irgsp1_rep	five_prime_UTR	22494802	22494991	.	-	.	Parent=Os05t0458100-01
Chr05	irgsp1_rep	five_prime_UTR	22494020	22494054	.	-	.	Parent=Os05t0458100-01
Chr05	irgsp1_rep	CDS	22493911	22494019	.	-	0	Parent=Os05t0458100-01
Chr05	irgsp1_rep	CDS	22493470	22493603	.	-	2	Parent=Os05t0458100-01
Chr05	irgsp1_rep	CDS	22493302	22493381	.	-	0	Parent=Os05t0458100-01
Chr05	irgsp1_rep	CDS	22493133	22493225	.	-	1	Parent=Os05t0458100-01
Chr05	irgsp1_rep	CDS	22492697	22492841	.	-	1	Parent=Os05t0458100-01
Chr05	irgsp1_rep	three_prime_UTR	22492473	22492696	.	-	.	Parent=Os05t0458100-01
Chr05	irgsp1_rep	mRNA	22496383	22496982	.	-	.	ID=Os05t0458200-01;Name=Os05t0458200-01;Locus_id=Os05g0458200;Note=Hypothetical conserved gene.;Transcript_evidence=AK241283 (DDBJ%2C Best hit);ORF_evidence=B9FJE3 (UniProt);InterPro=DVL (IPR012552);NIAS_FLcDNA=J065136J21;TENOR=Os05t0458200-01;KEGG=Os05t0458200-01
Chr05	irgsp1_rep	five_prime_UTR	22496897	22496982	.	-	.	Parent=Os05t0458200-01
Chr05	irgsp1_rep	CDS	22496633	22496896	.	-	0	Parent=Os05t0458200-01
Chr05	irgsp1_rep	three_prime_UTR	22496383	22496632	.	-	.	Parent=Os05t0458200-01
Chr05	irgsp1_rep	mRNA	22499463	22503475	.	-	.	ID=Os05t0458300-00;Name=Os05t0458300-00;Locus_id=Os05g0458300;CGSNL Gene Symbol=LAC13;CGSNL Gene Name=LACCASE 13;Oryzabase Gene Symbol Synonym(s)=OsLAC13;Oryzabase Gene Name Synonym(s)=laccase 13;Note=Similar to L-ascorbate oxidase.;Transcript_evidence=FP100848 (DDBJ);ORF_evidence=B6UCC4 (UniProt);GO=Biological Process: lignin catabolic process (GO:0046274),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: apoplast (GO:0048046),Molecular Function: copper ion binding (GO:0005507),Molecular Function: laccase activity (GO:0008471),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Multicopper oxidase%2C type 1 (IPR001117),Multicopper oxidase%2C copper-binding site (IPR002355),Cupredoxin (IPR008972),Multicopper oxidase%2C type 2 (IPR011706),Multicopper oxidase%2C type 3 (IPR011707),Laccase (IPR017761);Oryzabase=21615;TENOR=Os05t0458300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	22503412	22503475	.	-	.	Parent=Os05t0458300-00
Chr05	irgsp1_rep	CDS	22503286	22503411	.	-	0	Parent=Os05t0458300-00
Chr05	irgsp1_rep	CDS	22503015	22503166	.	-	0	Parent=Os05t0458300-00
Chr05	irgsp1_rep	CDS	22502682	22502926	.	-	1	Parent=Os05t0458300-00
Chr05	irgsp1_rep	CDS	22502459	22502590	.	-	2	Parent=Os05t0458300-00
Chr05	irgsp1_rep	CDS	22501407	22502372	.	-	2	Parent=Os05t0458300-00
Chr05	irgsp1_rep	CDS	22499703	22499836	.	-	2	Parent=Os05t0458300-00
Chr05	irgsp1_rep	three_prime_UTR	22499463	22499702	.	-	.	Parent=Os05t0458300-00
Chr05	irgsp1_rep	mRNA	22518318	22524115	.	+	.	ID=Os05t0458400-01;Name=Os05t0458400-01;Locus_id=Os05g0458400;CGSNL Gene Symbol=FTSH8;Oryzabase Gene Symbol Synonym(s)=OsFtsH8%2C FtsH8;Note=Similar to AAA-metalloprotease FtsH.;Transcript_evidence=AK069936 (DDBJ%2C Best hit);ORF_evidence=Q0DHL4 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: protein catabolic process (GO:0030163),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: ATP binding (GO:0005524),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=Peptidase M41 (IPR000642),ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960),Peptidase M41%2C FtsH (IPR005936),Peptidase M41%2C FtsH extracellular (IPR011546);NIAS_FLcDNA=J023039G20;Oryzabase=21260;Expression=AK069936;TENOR=Os05t0458400-01;KEGG=Os05t0458400-01 (EC:3.4.24.-)
Chr05	irgsp1_rep	five_prime_UTR	22518318	22518528	.	+	.	Parent=Os05t0458400-01
Chr05	irgsp1_rep	CDS	22518529	22518595	.	+	0	Parent=Os05t0458400-01
Chr05	irgsp1_rep	CDS	22518687	22518917	.	+	2	Parent=Os05t0458400-01
Chr05	irgsp1_rep	CDS	22519024	22519098	.	+	2	Parent=Os05t0458400-01
Chr05	irgsp1_rep	CDS	22519756	22519889	.	+	2	Parent=Os05t0458400-01
Chr05	irgsp1_rep	CDS	22520334	22520819	.	+	0	Parent=Os05t0458400-01
Chr05	irgsp1_rep	CDS	22520999	22521766	.	+	0	Parent=Os05t0458400-01
Chr05	irgsp1_rep	CDS	22522512	22522739	.	+	0	Parent=Os05t0458400-01
Chr05	irgsp1_rep	CDS	22523439	22523918	.	+	0	Parent=Os05t0458400-01
Chr05	irgsp1_rep	three_prime_UTR	22523919	22524115	.	+	.	Parent=Os05t0458400-01
Chr05	irgsp1_rep	mRNA	22526526	22528641	.	-	.	ID=Os05t0458500-00;Name=Os05t0458500-00;Locus_id=Os05g0458500;CGSNL Gene Symbol=LAC14;CGSNL Gene Name=LACCASE 14;Oryzabase Gene Symbol Synonym(s)=OsLAC14%2C OsLAC13%2C LAC13;Oryzabase Gene Name Synonym(s)=lactase%2C laccase 14;Note=Similar to Laccase (EC 1.10.3.2).;Transcript_evidence=Q0DHL2 (UniProt);ORF_evidence=Q0DHL2 (UniProt);GO=Biological Process: lignin catabolic process (GO:0046274),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: apoplast (GO:0048046),Molecular Function: copper ion binding (GO:0005507),Molecular Function: laccase activity (GO:0008471),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Multicopper oxidase%2C type 1 (IPR001117),Multicopper oxidase%2C copper-binding site (IPR002355),Cupredoxin (IPR008972),Multicopper oxidase%2C type 2 (IPR011706),Multicopper oxidase%2C type 3 (IPR011707),Laccase (IPR017761);Oryzabase=18567;TENOR=Os05t0458500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	22528537	22528641	.	-	0	Parent=Os05t0458500-00
Chr05	irgsp1_rep	CDS	22528290	22528441	.	-	0	Parent=Os05t0458500-00
Chr05	irgsp1_rep	CDS	22527828	22528201	.	-	1	Parent=Os05t0458500-00
Chr05	irgsp1_rep	CDS	22526787	22527749	.	-	2	Parent=Os05t0458500-00
Chr05	irgsp1_rep	CDS	22526526	22526656	.	-	2	Parent=Os05t0458500-00
Chr05	irgsp1_rep	mRNA	22533536	22536087	.	+	.	ID=Os05t0458600-01;Name=Os05t0458600-01;Locus_id=Os05g0458600;RAP-DB Gene Symbol Synonym(s)=OsLAC%2C OsLAC15;RAP-DB Gene Name Synonym(s)=lactase 15;CGSNL Gene Symbol=LAC15;CGSNL Gene Name=LACCASE 15;Oryzabase Gene Symbol Synonym(s)=OsLAC%2C OsLAC15%2C OsLAC13%2C LAC13;Oryzabase Gene Name Synonym(s)=lactase 15%2C laccase-13%2C laccase 13;Note=Laccase-like protein%2C Sensitivity of plants to brassinosteroids;Transcript_evidence=AK068047;ORF_evidence=P0DKK6;GO=Biological Process: lignin catabolic process (GO:0046274),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: copper ion binding (GO:0005507),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: hydroquinone:oxygen oxidoreductase activity (GO:0052716),Cellular Component: apoplast (GO:0048046);InterPro=Cupredoxin (IPR008972),Laccase (IPR017761),Multicopper oxidase%2C type 3 (IPR011707),Laccase%2C first cupredoxin domain (IPR034288),Multicopper oxidase%2C type 1 (IPR001117),Laccase%2C second cupredoxin domain (IPR034285),Multicopper oxidase%2C type 2 (IPR011706),Laccase%2C third cupredoxin domain (IPR034289),Multicopper oxidases%2C conserved site (IPR033138),Multicopper oxidase%2C copper-binding site (IPR002355);NIAS_FLcDNA=J013135B16;Manual Curation=December 4%2C 2017;Literature_PMID=23873084,28146098;Oryzabase=13487;Expression=AK068047;TENOR=Os05t0458600-01;KEGG=Os05t0458600-01 (EC:1.10.3.2)
Chr05	irgsp1_rep	five_prime_UTR	22533536	22533601	.	+	.	Parent=Os05t0458600-01
Chr05	irgsp1_rep	CDS	22533602	22533706	.	+	0	Parent=Os05t0458600-01
Chr05	irgsp1_rep	CDS	22533802	22533953	.	+	0	Parent=Os05t0458600-01
Chr05	irgsp1_rep	CDS	22534042	22534415	.	+	1	Parent=Os05t0458600-01
Chr05	irgsp1_rep	CDS	22534494	22535453	.	+	2	Parent=Os05t0458600-01
Chr05	irgsp1_rep	CDS	22535584	22535717	.	+	2	Parent=Os05t0458600-01
Chr05	irgsp1_rep	three_prime_UTR	22535718	22536087	.	+	.	Parent=Os05t0458600-01
Chr05	irgsp1_rep	mRNA	22534654	22536087	.	+	.	ID=Os05t0458600-02;Name=Os05t0458600-02;Locus_id=Os05g0458600;CGSNL Gene Symbol=LAC15;CGSNL Gene Name=LACCASE 15;Oryzabase Gene Symbol Synonym(s)=OsLAC%2C OsLAC15%2C OsLAC13%2C LAC13;Oryzabase Gene Name Synonym(s)=lactase 15%2C laccase-13%2C laccase 13;Note=Similar to Laccase-12/13.;Transcript_evidence=AK060362 (DDBJ%2C Best hit);ORF_evidence=Q0DHL2 (UniProt);GO=Biological Process: lignin catabolic process (GO:0046274),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: apoplast (GO:0048046),Molecular Function: copper ion binding (GO:0005507),Molecular Function: laccase activity (GO:0008471),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Multicopper oxidase%2C type 1 (IPR001117),Multicopper oxidase%2C copper-binding site (IPR002355),Cupredoxin (IPR008972),Multicopper oxidase%2C type 2 (IPR011706),Laccase (IPR017761);NIAS_FLcDNA=001-008-H08;Oryzabase=13487;Expression=AK060362;TENOR=Os05t0458600-02;KEGG=Os05t0458600-02
Chr05	irgsp1_rep	five_prime_UTR	22534654	22534654	.	+	.	Parent=Os05t0458600-02
Chr05	irgsp1_rep	CDS	22534655	22535453	.	+	0	Parent=Os05t0458600-02
Chr05	irgsp1_rep	CDS	22535584	22535717	.	+	2	Parent=Os05t0458600-02
Chr05	irgsp1_rep	three_prime_UTR	22535718	22536087	.	+	.	Parent=Os05t0458600-02
Chr05	irgsp1_rep	mRNA	22553306	22561005	.	-	.	ID=Os05t0459000-01;Name=Os05t0459000-01;Locus_id=Os05g0459000;CGSNL Gene Symbol=DLN143;CGSNL Gene Name=DLN REPRESSOR 143;Oryzabase Gene Symbol Synonym(s)=OsDLN143;Oryzabase Gene Name Synonym(s)=DLN repressor 143%2C DLN motif protein 143;Note=Similar to Gag/env/c-myb protein (Fragment).;Transcript_evidence=AK106756 (DDBJ%2C Best hit);ORF_evidence=E5KXH7 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=002-115-D07;Oryzabase=23201;Expression=AK106756;TENOR=Os05t0459000-01;KEGG=Os05t0459000-01
Chr05	irgsp1_rep	five_prime_UTR	22560822	22561005	.	-	.	Parent=Os05t0459000-01
Chr05	irgsp1_rep	five_prime_UTR	22560687	22560717	.	-	.	Parent=Os05t0459000-01
Chr05	irgsp1_rep	CDS	22560544	22560686	.	-	0	Parent=Os05t0459000-01
Chr05	irgsp1_rep	CDS	22557886	22557937	.	-	1	Parent=Os05t0459000-01
Chr05	irgsp1_rep	CDS	22557628	22557685	.	-	0	Parent=Os05t0459000-01
Chr05	irgsp1_rep	CDS	22556925	22556995	.	-	2	Parent=Os05t0459000-01
Chr05	irgsp1_rep	CDS	22556745	22556848	.	-	0	Parent=Os05t0459000-01
Chr05	irgsp1_rep	CDS	22555645	22555773	.	-	1	Parent=Os05t0459000-01
Chr05	irgsp1_rep	CDS	22553977	22555186	.	-	1	Parent=Os05t0459000-01
Chr05	irgsp1_rep	three_prime_UTR	22553970	22553976	.	-	.	Parent=Os05t0459000-01
Chr05	irgsp1_rep	three_prime_UTR	22553306	22553732	.	-	.	Parent=Os05t0459000-01
Chr05	irgsp1_rep	mRNA	22565955	22566326	.	+	.	ID=Os05t0459200-00;Name=Os05t0459200-00;Locus_id=Os05g0459200;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os05t0459200-00;KEGG=Os05t0459200-00
Chr05	irgsp1_rep	CDS	22565955	22566326	.	+	0	Parent=Os05t0459200-00
Chr05	irgsp1_rep	mRNA	22568114	22570970	.	+	.	ID=Os05t0459300-01;Name=Os05t0459300-01;Locus_id=Os05g0459300;Note=Conserved hypothetical protein.;Transcript_evidence=AK121463 (DDBJ%2C Best hit);ORF_evidence=B7E7C1 (UniProt);NIAS_FLcDNA=J023145E12;TENOR=Os05t0459300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	22568114	22569145	.	+	.	Parent=Os05t0459300-01
Chr05	irgsp1_rep	CDS	22569146	22569817	.	+	0	Parent=Os05t0459300-01
Chr05	irgsp1_rep	three_prime_UTR	22569818	22570970	.	+	.	Parent=Os05t0459300-01
Chr05	irgsp1_rep	mRNA	22568358	22570104	.	+	.	ID=Os05t0459300-02;Name=Os05t0459300-02;Locus_id=Os05g0459300;Note=Conserved hypothetical protein.;Transcript_evidence=AK119604 (DDBJ%2C Best hit);ORF_evidence=A2Y5F3 (UniProt);NIAS_FLcDNA=002-117-E11;TENOR=Os05t0459300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	22568358	22569145	.	+	.	Parent=Os05t0459300-02
Chr05	irgsp1_rep	CDS	22569146	22569817	.	+	0	Parent=Os05t0459300-02
Chr05	irgsp1_rep	three_prime_UTR	22569818	22570104	.	+	.	Parent=Os05t0459300-02
Chr05	irgsp1_rep	mRNA	22568905	22570013	.	+	.	ID=Os05t0459300-03;Name=Os05t0459300-03;Locus_id=Os05g0459300;Note=Conserved hypothetical protein.;Transcript_evidence=AK062312 (DDBJ%2C Best hit);ORF_evidence=A2Y5F3 (UniProt);NIAS_FLcDNA=001-101-B09;TENOR=Os05t0459300-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	22568905	22569145	.	+	.	Parent=Os05t0459300-03
Chr05	irgsp1_rep	CDS	22569146	22569817	.	+	0	Parent=Os05t0459300-03
Chr05	irgsp1_rep	three_prime_UTR	22569818	22570013	.	+	.	Parent=Os05t0459300-03
Chr05	irgsp1_rep	mRNA	22574145	22577678	.	+	.	ID=Os05t0459400-01;Name=Os05t0459400-01;Locus_id=Os05g0459400;Note=Kinesin%2C motor region domain containing protein.;Transcript_evidence=AK073413 (DDBJ%2C Best hit);ORF_evidence=NP_195857.2 (RefSeq);GO=Biological Process: DNA repair (GO:0006281),Biological Process: microtubule-based movement (GO:0007018),Molecular Function: DNA binding (GO:0003677),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752),Helix-hairpin-helix DNA-binding motif%2C class 1 (IPR003583),Kinesin%2C motor region%2C conserved site (IPR019821);NIAS_FLcDNA=J033041G22;Expression=AK073413;TENOR=Os05t0459400-01;KEGG=Os05t0459400-01
Chr05	irgsp1_rep	five_prime_UTR	22574145	22574231	.	+	.	Parent=Os05t0459400-01
Chr05	irgsp1_rep	CDS	22574232	22574395	.	+	0	Parent=Os05t0459400-01
Chr05	irgsp1_rep	CDS	22574652	22574817	.	+	1	Parent=Os05t0459400-01
Chr05	irgsp1_rep	CDS	22574922	22575122	.	+	0	Parent=Os05t0459400-01
Chr05	irgsp1_rep	CDS	22575224	22575395	.	+	0	Parent=Os05t0459400-01
Chr05	irgsp1_rep	CDS	22575487	22575692	.	+	2	Parent=Os05t0459400-01
Chr05	irgsp1_rep	CDS	22575779	22576083	.	+	0	Parent=Os05t0459400-01
Chr05	irgsp1_rep	CDS	22576174	22576259	.	+	1	Parent=Os05t0459400-01
Chr05	irgsp1_rep	CDS	22576430	22576662	.	+	2	Parent=Os05t0459400-01
Chr05	irgsp1_rep	CDS	22576755	22576801	.	+	0	Parent=Os05t0459400-01
Chr05	irgsp1_rep	CDS	22576913	22576934	.	+	1	Parent=Os05t0459400-01
Chr05	irgsp1_rep	CDS	22577013	22577081	.	+	0	Parent=Os05t0459400-01
Chr05	irgsp1_rep	CDS	22577160	22577198	.	+	0	Parent=Os05t0459400-01
Chr05	irgsp1_rep	CDS	22577310	22577354	.	+	0	Parent=Os05t0459400-01
Chr05	irgsp1_rep	three_prime_UTR	22577355	22577678	.	+	.	Parent=Os05t0459400-01
Chr05	irgsp1_rep	mRNA	22575025	22577663	.	+	.	ID=Os05t0459400-02;Name=Os05t0459400-02;Locus_id=Os05g0459400;Note=Similar to kinesin motor protein-related.;Transcript_evidence=AK104040 (DDBJ%2C Best hit);ORF_evidence=NP_195857.2 (RefSeq);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752),Kinesin%2C motor region%2C conserved site (IPR019821);NIAS_FLcDNA=001-021-G07;Expression=AK104040;TENOR=Os05t0459400-02;KEGG=Os05t0459400-02
Chr05	irgsp1_rep	five_prime_UTR	22575025	22575026	.	+	.	Parent=Os05t0459400-02
Chr05	irgsp1_rep	CDS	22575027	22575122	.	+	0	Parent=Os05t0459400-02
Chr05	irgsp1_rep	CDS	22575224	22575395	.	+	0	Parent=Os05t0459400-02
Chr05	irgsp1_rep	CDS	22575487	22575692	.	+	2	Parent=Os05t0459400-02
Chr05	irgsp1_rep	CDS	22575779	22576083	.	+	0	Parent=Os05t0459400-02
Chr05	irgsp1_rep	CDS	22576174	22576259	.	+	1	Parent=Os05t0459400-02
Chr05	irgsp1_rep	CDS	22576430	22576662	.	+	2	Parent=Os05t0459400-02
Chr05	irgsp1_rep	CDS	22576755	22576801	.	+	0	Parent=Os05t0459400-02
Chr05	irgsp1_rep	CDS	22576913	22576934	.	+	1	Parent=Os05t0459400-02
Chr05	irgsp1_rep	CDS	22577013	22577081	.	+	0	Parent=Os05t0459400-02
Chr05	irgsp1_rep	CDS	22577160	22577198	.	+	0	Parent=Os05t0459400-02
Chr05	irgsp1_rep	CDS	22577310	22577354	.	+	0	Parent=Os05t0459400-02
Chr05	irgsp1_rep	three_prime_UTR	22577355	22577663	.	+	.	Parent=Os05t0459400-02
Chr05	irgsp1_rep	mRNA	22580168	22581005	.	+	.	ID=Os05t0459600-00;Name=Os05t0459600-00;Locus_id=Os05g0459600;Note=Hypothetical conserved gene.;Transcript_evidence=CT836352 (DDBJ%2C Best hit);ORF_evidence=B8AZ00 (UniProt);TENOR=Os05t0459600-00;KEGG=Os05t0459600-00
Chr05	irgsp1_rep	five_prime_UTR	22580168	22580336	.	+	.	Parent=Os05t0459600-00
Chr05	irgsp1_rep	CDS	22580337	22580888	.	+	0	Parent=Os05t0459600-00
Chr05	irgsp1_rep	three_prime_UTR	22580889	22581005	.	+	.	Parent=Os05t0459600-00
Chr05	irgsp1_rep	mRNA	22587172	22588874	.	+	.	ID=Os05t0459700-01;Name=Os05t0459700-01;Locus_id=Os05g0459700;CGSNL Gene Symbol=FLA26;CGSNL Gene Name=FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 26;Oryzabase Gene Symbol Synonym(s)=OsFLA26;Oryzabase Gene Name Synonym(s)=fasciclin-like AGP 26%2C fasciclin-like arabinogalactan protein 26;Note=Similar to Fasciclin-like protein FLA22.;Transcript_evidence=AK289211 (DDBJ%2C Best hit);ORF_evidence=Q06I84 (UniProt);InterPro=FAS1 domain (IPR000782);NIAS_FLcDNA=J100060N06;Oryzabase=11361;TENOR=Os05t0459700-01;KEGG=Os05t0459700-01
Chr05	irgsp1_rep	five_prime_UTR	22587172	22587261	.	+	.	Parent=Os05t0459700-01
Chr05	irgsp1_rep	CDS	22587262	22588587	.	+	0	Parent=Os05t0459700-01
Chr05	irgsp1_rep	three_prime_UTR	22588588	22588874	.	+	.	Parent=Os05t0459700-01
Chr05	irgsp1_rep	mRNA	22596427	22598350	.	+	.	ID=Os05t0459900-01;Name=Os05t0459900-01;Locus_id=Os05g0459900;Note=Similar to 60S ribosomal protein L36-1.;Transcript_evidence=AK058918 (DDBJ%2C Best hit);ORF_evidence=A2Y5F8 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L36e (IPR000509);NIAS_FLcDNA=001-009-B04;Expression=AK058918;TENOR=Os05t0459900-01;KEGG=Os05t0459900-01
Chr05	irgsp1_rep	five_prime_UTR	22596427	22596459	.	+	.	Parent=Os05t0459900-01
Chr05	irgsp1_rep	five_prime_UTR	22596568	22596583	.	+	.	Parent=Os05t0459900-01
Chr05	irgsp1_rep	CDS	22596584	22596685	.	+	0	Parent=Os05t0459900-01
Chr05	irgsp1_rep	CDS	22597372	22597571	.	+	0	Parent=Os05t0459900-01
Chr05	irgsp1_rep	CDS	22598123	22598162	.	+	1	Parent=Os05t0459900-01
Chr05	irgsp1_rep	three_prime_UTR	22598163	22598350	.	+	.	Parent=Os05t0459900-01
Chr05	irgsp1_rep	mRNA	22596427	22597105	.	+	.	ID=Os05t0459900-02;Name=Os05t0459900-02;Locus_id=Os05g0459900;Note=Similar to 60S ribosomal protein L36.;Transcript_evidence=AK111268 (DDBJ%2C Best hit);ORF_evidence=Q5I7L5 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L36e (IPR000509);NIAS_FLcDNA=002-180-F09;Expression=AK111268;TENOR=Os05t0459900-02;KEGG=Os05t0459900-02
Chr05	irgsp1_rep	five_prime_UTR	22596427	22596583	.	+	.	Parent=Os05t0459900-02
Chr05	irgsp1_rep	CDS	22596584	22596742	.	+	0	Parent=Os05t0459900-02
Chr05	irgsp1_rep	three_prime_UTR	22596743	22597105	.	+	.	Parent=Os05t0459900-02
Chr05	irgsp1_rep	mRNA	22599462	22602556	.	-	.	ID=Os05t0460000-01;Name=Os05t0460000-01;Locus_id=Os05g0460000;CGSNL Gene Symbol=CTHSP70-1;CGSNL Gene Name=CYTOSOLIC HEAT SHOCK PROTEIN 70-1;Oryzabase Gene Symbol Synonym(s)=OsctHSP70-1%2C ctHSP70-1%2C OsMed37_6%2C Med37_6;Oryzabase Gene Name Synonym(s)=cytosolic HSP70-1%2C cytosolic heat shock protein 70-1%2C heat-shock protein cognate 70%2C Mediator 37_6;Note=Similar to 70 kDa heat shock cognate protein 1.;Transcript_evidence=AK243004 (DDBJ%2C Best hit);ORF_evidence=Q9SAU8 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Heat shock protein Hsp70 (IPR001023),Heat shock protein 70 (IPR013126),Heat shock protein 70%2C conserved site (IPR018181);NIAS_FLcDNA=J090096I11;Oryzabase=13484;TENOR=Os05t0460000-01;KEGG=Os05t0460000-01
Chr05	irgsp1_rep	five_prime_UTR	22602424	22602556	.	-	.	Parent=Os05t0460000-01
Chr05	irgsp1_rep	CDS	22602213	22602423	.	-	0	Parent=Os05t0460000-01
Chr05	irgsp1_rep	CDS	22599683	22601412	.	-	2	Parent=Os05t0460000-01
Chr05	irgsp1_rep	three_prime_UTR	22599462	22599682	.	-	.	Parent=Os05t0460000-01
Chr05	irgsp1_rep	mRNA	22615894	22620207	.	+	.	ID=Os05t0460200-01;Name=Os05t0460200-01;Locus_id=Os05g0460200;CGSNL Gene Symbol=UBC12;CGSNL Gene Name=UBIQUITIN-CONJUGATING ENZYME 12;Oryzabase Gene Symbol Synonym(s)=OsUBC12;Oryzabase Gene Name Synonym(s)=Ubiquitin-conjugating enzyme 12;Note=Similar to Ubiquitin carrier protein.;Transcript_evidence=AK111999 (DDBJ%2C Best hit),AK098861 (DDBJ%2C Best hit),AK111857 (DDBJ%2C Best hit);ORF_evidence=A2Y5G0 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135),Ubiquitin-conjugating enzyme%2C active site (IPR023313);NIAS_FLcDNA=001-034-F08,J013000O01,J033021F14;Oryzabase=19559;TENOR=Os05t0460200-01
Chr05	irgsp1_rep	five_prime_UTR	22615894	22616012	.	+	.	Parent=Os05t0460200-01
Chr05	irgsp1_rep	CDS	22616013	22616064	.	+	0	Parent=Os05t0460200-01
Chr05	irgsp1_rep	CDS	22616188	22616290	.	+	2	Parent=Os05t0460200-01
Chr05	irgsp1_rep	CDS	22618405	22618502	.	+	1	Parent=Os05t0460200-01
Chr05	irgsp1_rep	CDS	22618574	22618674	.	+	2	Parent=Os05t0460200-01
Chr05	irgsp1_rep	CDS	22619196	22619273	.	+	0	Parent=Os05t0460200-01
Chr05	irgsp1_rep	CDS	22619722	22619799	.	+	0	Parent=Os05t0460200-01
Chr05	irgsp1_rep	three_prime_UTR	22619800	22620207	.	+	.	Parent=Os05t0460200-01
Chr05	irgsp1_rep	mRNA	22615917	22620088	.	-	.	ID=Os05t0460350-00;Name=Os05t0460350-00;Locus_id=Os05g0460350;Note=Non-protein coding transcript.;Transcript_evidence=BT019147 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0460350-00
Chr05	irgsp1_rep	exon	22619717	22620088	.	-	.	Parent=Os05t0460350-00
Chr05	irgsp1_rep	exon	22619190	22619269	.	-	.	Parent=Os05t0460350-00
Chr05	irgsp1_rep	exon	22618573	22618663	.	-	.	Parent=Os05t0460350-00
Chr05	irgsp1_rep	exon	22618391	22618501	.	-	.	Parent=Os05t0460350-00
Chr05	irgsp1_rep	exon	22616186	22616285	.	-	.	Parent=Os05t0460350-00
Chr05	irgsp1_rep	exon	22615917	22616062	.	-	.	Parent=Os05t0460350-00
Chr05	irgsp1_rep	mRNA	22625295	22625615	.	+	.	ID=Os05t0460475-00;Name=Os05t0460475-00;Locus_id=Os05g0460475;Note=Similar to Histone H2B.11.;Transcript_evidence=A2WWU2 (UniProt);ORF_evidence=Q943L2 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H2B (IPR000558),Histone core (IPR007125),Histone-fold (IPR009072);TENOR=Os05t0460475-00
Chr05	irgsp1_rep	CDS	22625295	22625615	.	+	0	Parent=Os05t0460475-00
Chr05	irgsp1_rep	mRNA	22625816	22627426	.	+	.	ID=Os05t0460500-00;Name=Os05t0460500-00;Locus_id=Os05g0460500;Note=Hypothetical gene.;Transcript_evidence=BT009228 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0460500-00;KEGG=Os05t0460500-00
Chr05	irgsp1_rep	five_prime_UTR	22625816	22626023	.	+	.	Parent=Os05t0460500-00
Chr05	irgsp1_rep	five_prime_UTR	22626105	22626119	.	+	.	Parent=Os05t0460500-00
Chr05	irgsp1_rep	CDS	22626120	22626416	.	+	0	Parent=Os05t0460500-00
Chr05	irgsp1_rep	CDS	22626836	22626978	.	+	0	Parent=Os05t0460500-00
Chr05	irgsp1_rep	CDS	22627309	22627330	.	+	1	Parent=Os05t0460500-00
Chr05	irgsp1_rep	three_prime_UTR	22627331	22627426	.	+	.	Parent=Os05t0460500-00
Chr05	irgsp1_rep	mRNA	22625667	22629028	.	-	.	ID=Os05t0460600-01;Name=Os05t0460600-01;Locus_id=Os05g0460600;Note=Similar to GTP cyclohydrolase II/3%2C4-dihydroxy-2-butanone-4-phosphate synthase- like protein (Fragment).;Transcript_evidence=AK072931 (DDBJ%2C Best hit);ORF_evidence=Q84PC2 (UniProt);GO=Biological Process: riboflavin biosynthetic process (GO:0009231),Molecular Function: GTP cyclohydrolase II activity (GO:0003935),Molecular Function: 3%2C4-dihydroxy-2-butanone-4-phosphate synthase activity (GO:0008686);InterPro=3%2C4-dihydroxy-2-butanone 4-phosphate synthase%2C RibB (IPR000422),GTP cyclohydrolase II%2C RibA (IPR000926),DHBP synthase RibB-like alpha/beta domain (IPR017945);NIAS_FLcDNA=J023144M13;Expression=AK072931;TENOR=Os05t0460600-01;KEGG=Os05t0460600-01 (EC:3.5.4.25%2C EC:4.1.99.12)
Chr05	irgsp1_rep	five_prime_UTR	22628995	22629028	.	-	.	Parent=Os05t0460600-01
Chr05	irgsp1_rep	CDS	22628939	22628994	.	-	0	Parent=Os05t0460600-01
Chr05	irgsp1_rep	CDS	22628516	22628828	.	-	1	Parent=Os05t0460600-01
Chr05	irgsp1_rep	CDS	22627753	22627974	.	-	0	Parent=Os05t0460600-01
Chr05	irgsp1_rep	CDS	22627311	22627636	.	-	0	Parent=Os05t0460600-01
Chr05	irgsp1_rep	CDS	22626851	22626980	.	-	1	Parent=Os05t0460600-01
Chr05	irgsp1_rep	CDS	22626135	22626431	.	-	0	Parent=Os05t0460600-01
Chr05	irgsp1_rep	CDS	22625783	22626049	.	-	0	Parent=Os05t0460600-01
Chr05	irgsp1_rep	three_prime_UTR	22625667	22625782	.	-	.	Parent=Os05t0460600-01
Chr05	irgsp1_rep	mRNA	22625671	22629023	.	-	.	ID=Os05t0460600-02;Name=Os05t0460600-02;Locus_id=Os05g0460600;Note=Similar to riboflavin biosynthesis protein ribAB.;Transcript_evidence=AK067655 (DDBJ%2C Best hit);ORF_evidence=NP_001149201.1 (RefSeq);NIAS_FLcDNA=J013116D09;Expression=AK067655;TENOR=Os05t0460600-02;KEGG=Os05t0460600-02 (EC:3.5.4.25%2C EC:4.1.99.12)
Chr05	irgsp1_rep	five_prime_UTR	22628995	22629023	.	-	.	Parent=Os05t0460600-02
Chr05	irgsp1_rep	CDS	22628939	22628994	.	-	0	Parent=Os05t0460600-02
Chr05	irgsp1_rep	CDS	22628516	22628828	.	-	1	Parent=Os05t0460600-02
Chr05	irgsp1_rep	CDS	22627881	22627958	.	-	0	Parent=Os05t0460600-02
Chr05	irgsp1_rep	three_prime_UTR	22627753	22627880	.	-	.	Parent=Os05t0460600-02
Chr05	irgsp1_rep	three_prime_UTR	22625671	22627636	.	-	.	Parent=Os05t0460600-02
Chr05	irgsp1_rep	mRNA	22630324	22632486	.	-	.	ID=Os05t0460700-01;Name=Os05t0460700-01;Locus_id=Os05g0460700;Note=Ribosomal protein L17 family protein.;Transcript_evidence=AK103320 (DDBJ%2C Best hit);ORF_evidence=B6TSY1 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L17 (IPR000456);NIAS_FLcDNA=J033125I20;Expression=AK103320;TENOR=Os05t0460700-01;KEGG=Os05t0460700-01
Chr05	irgsp1_rep	five_prime_UTR	22632407	22632486	.	-	.	Parent=Os05t0460700-01
Chr05	irgsp1_rep	CDS	22632351	22632406	.	-	0	Parent=Os05t0460700-01
Chr05	irgsp1_rep	CDS	22632157	22632211	.	-	1	Parent=Os05t0460700-01
Chr05	irgsp1_rep	CDS	22631976	22632026	.	-	0	Parent=Os05t0460700-01
Chr05	irgsp1_rep	CDS	22631282	22631373	.	-	0	Parent=Os05t0460700-01
Chr05	irgsp1_rep	CDS	22631076	22631153	.	-	1	Parent=Os05t0460700-01
Chr05	irgsp1_rep	CDS	22630838	22630891	.	-	1	Parent=Os05t0460700-01
Chr05	irgsp1_rep	CDS	22630387	22630591	.	-	1	Parent=Os05t0460700-01
Chr05	irgsp1_rep	three_prime_UTR	22630324	22630386	.	-	.	Parent=Os05t0460700-01
Chr05	irgsp1_rep	mRNA	22633185	22636107	.	-	.	ID=Os05t0460800-01;Name=Os05t0460800-01;Locus_id=Os05g0460800;Note=Protein-tyrosine phosphatase-like%2C PTPLA domain containing protein.;Transcript_evidence=AK058842 (DDBJ%2C Best hit);ORF_evidence=B6TSB6 (UniProt);InterPro=Protein-tyrosine phosphatase-like%2C PTPLA (IPR007482);NIAS_FLcDNA=001-004-E02;Expression=AK058842;TENOR=Os05t0460800-01;KEGG=Os05t0460800-01 (EC:4.2.1.-)
Chr05	irgsp1_rep	five_prime_UTR	22636048	22636107	.	-	.	Parent=Os05t0460800-01
Chr05	irgsp1_rep	CDS	22635989	22636047	.	-	0	Parent=Os05t0460800-01
Chr05	irgsp1_rep	CDS	22635800	22635885	.	-	1	Parent=Os05t0460800-01
Chr05	irgsp1_rep	CDS	22635629	22635676	.	-	2	Parent=Os05t0460800-01
Chr05	irgsp1_rep	CDS	22635454	22635542	.	-	2	Parent=Os05t0460800-01
Chr05	irgsp1_rep	CDS	22635105	22635158	.	-	0	Parent=Os05t0460800-01
Chr05	irgsp1_rep	CDS	22634454	22634521	.	-	0	Parent=Os05t0460800-01
Chr05	irgsp1_rep	CDS	22633760	22633809	.	-	1	Parent=Os05t0460800-01
Chr05	irgsp1_rep	CDS	22633558	22633655	.	-	2	Parent=Os05t0460800-01
Chr05	irgsp1_rep	CDS	22633316	22633423	.	-	0	Parent=Os05t0460800-01
Chr05	irgsp1_rep	three_prime_UTR	22633185	22633315	.	-	.	Parent=Os05t0460800-01
Chr05	irgsp1_rep	mRNA	22633185	22636084	.	-	.	ID=Os05t0460800-02;Name=Os05t0460800-02;Locus_id=Os05g0460800;Note=Similar to protein tyrosine phosphatase-like protein PTPLB.;Transcript_evidence=AK066350 (DDBJ%2C Best hit);ORF_evidence=B6TSB6 (UniProt);InterPro=Protein-tyrosine phosphatase-like%2C PTPLA (IPR007482);NIAS_FLcDNA=J013062E10;Expression=AK066350;TENOR=Os05t0460800-02;KEGG=Os05t0460800-02
Chr05	irgsp1_rep	five_prime_UTR	22636048	22636084	.	-	.	Parent=Os05t0460800-02
Chr05	irgsp1_rep	CDS	22635989	22636047	.	-	0	Parent=Os05t0460800-02
Chr05	irgsp1_rep	CDS	22635800	22635885	.	-	1	Parent=Os05t0460800-02
Chr05	irgsp1_rep	CDS	22635629	22635676	.	-	2	Parent=Os05t0460800-02
Chr05	irgsp1_rep	CDS	22635412	22635542	.	-	2	Parent=Os05t0460800-02
Chr05	irgsp1_rep	three_prime_UTR	22633760	22635411	.	-	.	Parent=Os05t0460800-02
Chr05	irgsp1_rep	three_prime_UTR	22633558	22633655	.	-	.	Parent=Os05t0460800-02
Chr05	irgsp1_rep	three_prime_UTR	22633185	22633423	.	-	.	Parent=Os05t0460800-02
Chr05	irgsp1_rep	mRNA	22638486	22639041	.	-	.	ID=Os05t0460900-00;Name=Os05t0460900-00;Locus_id=Os05g0460900;CGSNL Gene Symbol=DLN144;CGSNL Gene Name=DLN REPRESSOR 144;Oryzabase Gene Symbol Synonym(s)=OsDLN144;Oryzabase Gene Name Synonym(s)=DLN repressor 144%2C DLN motif protein 144;Note=Hypothetical conserved gene.;Transcript_evidence=EU971116 (DDBJ);ORF_evidence=A2WWT8 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);Oryzabase=23202;TENOR=Os05t0460900-00;KEGG=Os05t0460900-00
Chr05	irgsp1_rep	five_prime_UTR	22639019	22639041	.	-	.	Parent=Os05t0460900-00
Chr05	irgsp1_rep	CDS	22638494	22639018	.	-	0	Parent=Os05t0460900-00
Chr05	irgsp1_rep	three_prime_UTR	22638486	22638493	.	-	.	Parent=Os05t0460900-00
Chr05	irgsp1_rep	mRNA	22641694	22644379	.	-	.	ID=Os05t0461000-01;Name=Os05t0461000-01;Locus_id=Os05g0461000;Note=Clathrin adaptor%2C sigma subunit/coatomer%2C zeta subunit domain containing protein.;Transcript_evidence=AK066739 (DDBJ%2C Best hit);ORF_evidence=Q9MAX5 (UniProt);GO=Biological Process: transport (GO:0006810);InterPro=Longin-like (IPR011012),AP complex%2C mu/sigma subunit (IPR022775);NIAS_FLcDNA=J013079J15;Expression=AK066739;TENOR=Os05t0461000-01;KEGG=Os05t0461000-01
Chr05	irgsp1_rep	five_prime_UTR	22644203	22644379	.	-	.	Parent=Os05t0461000-01
Chr05	irgsp1_rep	CDS	22644200	22644202	.	-	0	Parent=Os05t0461000-01
Chr05	irgsp1_rep	CDS	22643756	22643915	.	-	0	Parent=Os05t0461000-01
Chr05	irgsp1_rep	CDS	22642800	22642947	.	-	2	Parent=Os05t0461000-01
Chr05	irgsp1_rep	CDS	22642612	22642689	.	-	1	Parent=Os05t0461000-01
Chr05	irgsp1_rep	CDS	22642118	22642202	.	-	1	Parent=Os05t0461000-01
Chr05	irgsp1_rep	CDS	22641979	22642038	.	-	0	Parent=Os05t0461000-01
Chr05	irgsp1_rep	three_prime_UTR	22641694	22641978	.	-	.	Parent=Os05t0461000-01
Chr05	irgsp1_rep	mRNA	22641741	22644319	.	-	.	ID=Os05t0461000-02;Name=Os05t0461000-02;Locus_id=Os05g0461000;Note=Clathrin adaptor%2C sigma subunit/coatomer%2C zeta subunit domain containing protein.;Transcript_evidence=AK059189 (DDBJ%2C Best hit),AK099044 (DDBJ%2C Best hit),AK104166 (DDBJ%2C Best hit);ORF_evidence=Q9MAX5 (UniProt);GO=Biological Process: transport (GO:0006810);InterPro=Longin-like (IPR011012),AP complex%2C mu/sigma subunit (IPR022775);NIAS_FLcDNA=001-023-H02,J013145O08,006-212-D02;Expression=AK059189;TENOR=Os05t0461000-02;KEGG=Os05t0461000-02
Chr05	irgsp1_rep	five_prime_UTR	22644203	22644319	.	-	.	Parent=Os05t0461000-02
Chr05	irgsp1_rep	CDS	22644200	22644202	.	-	0	Parent=Os05t0461000-02
Chr05	irgsp1_rep	CDS	22643756	22643915	.	-	0	Parent=Os05t0461000-02
Chr05	irgsp1_rep	CDS	22642800	22642947	.	-	2	Parent=Os05t0461000-02
Chr05	irgsp1_rep	CDS	22642612	22642689	.	-	1	Parent=Os05t0461000-02
Chr05	irgsp1_rep	CDS	22642118	22642202	.	-	1	Parent=Os05t0461000-02
Chr05	irgsp1_rep	CDS	22641979	22642038	.	-	0	Parent=Os05t0461000-02
Chr05	irgsp1_rep	three_prime_UTR	22641741	22641978	.	-	.	Parent=Os05t0461000-02
Chr05	irgsp1_rep	mRNA	22648416	22649036	.	+	.	ID=Os05t0461200-00;Name=Os05t0461200-00;Locus_id=Os05g0461200;CGSNL Gene Symbol=DLN145;CGSNL Gene Name=DLN REPRESSOR 145;Oryzabase Gene Symbol Synonym(s)=OsDLN145;Oryzabase Gene Name Synonym(s)=DLN repressor 145%2C DLN motif protein 145;Note=Zinc finger%2C C2H2 domain containing protein.;Transcript_evidence=DQ245451 (DDBJ);ORF_evidence=A2Y5G6 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);Oryzabase=23203;TENOR=Os05t0461200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	22648416	22649036	.	+	0	Parent=Os05t0461200-00
Chr05	irgsp1_rep	mRNA	22649306	22652508	.	-	.	ID=Os05t0461300-01;Name=Os05t0461300-01;Locus_id=Os05g0461300;Oryzabase Gene Symbol Synonym(s)=OsRab8A2;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab8A2;Note=Similar to RAB8C.;Transcript_evidence=AK111917 (DDBJ%2C Best hit),AK111946 (DDBJ%2C Best hit);ORF_evidence=B4FB55 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: intracellular protein transport (GO:0006886),Biological Process: nucleocytoplasmic transport (GO:0006913),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Cellular Component: membrane (GO:0016020),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Ran GTPase (IPR002041),Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C Ras type (IPR020849),Small GTPase superfamily%2C ARF type (IPR024156);NIAS_FLcDNA=J033135H16,001-024-A04;Oryzabase=11092;TENOR=Os05t0461300-01
Chr05	irgsp1_rep	five_prime_UTR	22652348	22652508	.	-	.	Parent=Os05t0461300-01
Chr05	irgsp1_rep	five_prime_UTR	22652164	22652247	.	-	.	Parent=Os05t0461300-01
Chr05	irgsp1_rep	CDS	22652091	22652163	.	-	0	Parent=Os05t0461300-01
Chr05	irgsp1_rep	CDS	22650726	22650798	.	-	2	Parent=Os05t0461300-01
Chr05	irgsp1_rep	CDS	22650523	22650623	.	-	1	Parent=Os05t0461300-01
Chr05	irgsp1_rep	CDS	22650373	22650438	.	-	2	Parent=Os05t0461300-01
Chr05	irgsp1_rep	CDS	22650193	22650290	.	-	2	Parent=Os05t0461300-01
Chr05	irgsp1_rep	CDS	22649997	22650059	.	-	0	Parent=Os05t0461300-01
Chr05	irgsp1_rep	CDS	22649795	22649887	.	-	0	Parent=Os05t0461300-01
Chr05	irgsp1_rep	CDS	22649628	22649711	.	-	0	Parent=Os05t0461300-01
Chr05	irgsp1_rep	three_prime_UTR	22649306	22649627	.	-	.	Parent=Os05t0461300-01
Chr05	irgsp1_rep	mRNA	22649315	22652432	.	-	.	ID=Os05t0461300-02;Name=Os05t0461300-02;Locus_id=Os05g0461300;Oryzabase Gene Symbol Synonym(s)=OsRab8A2;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab8A2;Note=Similar to RAB8C.;Transcript_evidence=AK111972 (DDBJ%2C Best hit),AK112021 (DDBJ%2C Best hit);ORF_evidence=B4FB55 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: intracellular protein transport (GO:0006886),Biological Process: nucleocytoplasmic transport (GO:0006913),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Cellular Component: membrane (GO:0016020),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Ran GTPase (IPR002041),Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C Ras type (IPR020849),Small GTPase superfamily%2C ARF type (IPR024156);NIAS_FLcDNA=006-311-F01,006-310-H04;Oryzabase=11092;TENOR=Os05t0461300-02
Chr05	irgsp1_rep	five_prime_UTR	22652348	22652432	.	-	.	Parent=Os05t0461300-02
Chr05	irgsp1_rep	five_prime_UTR	22652164	22652247	.	-	.	Parent=Os05t0461300-02
Chr05	irgsp1_rep	CDS	22652091	22652163	.	-	0	Parent=Os05t0461300-02
Chr05	irgsp1_rep	CDS	22650726	22650798	.	-	2	Parent=Os05t0461300-02
Chr05	irgsp1_rep	CDS	22650523	22650623	.	-	1	Parent=Os05t0461300-02
Chr05	irgsp1_rep	CDS	22650373	22650438	.	-	2	Parent=Os05t0461300-02
Chr05	irgsp1_rep	CDS	22650193	22650290	.	-	2	Parent=Os05t0461300-02
Chr05	irgsp1_rep	CDS	22649997	22650059	.	-	0	Parent=Os05t0461300-02
Chr05	irgsp1_rep	CDS	22649795	22649887	.	-	0	Parent=Os05t0461300-02
Chr05	irgsp1_rep	CDS	22649628	22649711	.	-	0	Parent=Os05t0461300-02
Chr05	irgsp1_rep	three_prime_UTR	22649315	22649627	.	-	.	Parent=Os05t0461300-02
Chr05	irgsp1_rep	mRNA	22654851	22655486	.	-	.	ID=Os05t0461350-00;Name=Os05t0461350-00;Locus_id=Os05g0461350;Note=Hypothetical gene.;Transcript_evidence=CT836436 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os05t0461350-00;KEGG=Os05t0461350-00
Chr05	irgsp1_rep	five_prime_UTR	22655178	22655486	.	-	.	Parent=Os05t0461350-00
Chr05	irgsp1_rep	CDS	22654917	22655177	.	-	0	Parent=Os05t0461350-00
Chr05	irgsp1_rep	three_prime_UTR	22654851	22654916	.	-	.	Parent=Os05t0461350-00
Chr05	irgsp1_rep	mRNA	22656839	22658009	.	-	.	ID=Os05t0461400-02;Name=Os05t0461400-02;Locus_id=Os05g0461400;Note=Similar to Histone H2A.2.1.;Transcript_evidence=AK067406 (DDBJ%2C Best hit),AK099763 (DDBJ%2C Best hit);ORF_evidence=B6TMR1 (UniProt);NIAS_FLcDNA=J013099N23,J013094K03;Expression=AK067406;TENOR=Os05t0461400-02;KEGG=Os05t0461400-02
Chr05	irgsp1_rep	five_prime_UTR	22657941	22658009	.	-	.	Parent=Os05t0461400-02
Chr05	irgsp1_rep	CDS	22657722	22657940	.	-	0	Parent=Os05t0461400-02
Chr05	irgsp1_rep	CDS	22657373	22657645	.	-	0	Parent=Os05t0461400-02
Chr05	irgsp1_rep	three_prime_UTR	22656839	22657372	.	-	.	Parent=Os05t0461400-02
Chr05	irgsp1_rep	mRNA	22665339	22666001	.	+	.	ID=Os05t0461600-01;Name=Os05t0461600-01;Locus_id=Os05g0461600;Note=Similar to SIK1 protein (Nucleolar protein NOP56).;Transcript_evidence=AK107796 (DDBJ%2C Best hit);ORF_evidence=A2Y5H0 (UniProt);NIAS_FLcDNA=002-133-D10;Expression=AK107796;TENOR=Os05t0461600-01;KEGG=Os05t0461600-01
Chr05	irgsp1_rep	five_prime_UTR	22665339	22665429	.	+	.	Parent=Os05t0461600-01
Chr05	irgsp1_rep	CDS	22665430	22665714	.	+	0	Parent=Os05t0461600-01
Chr05	irgsp1_rep	three_prime_UTR	22665715	22666001	.	+	.	Parent=Os05t0461600-01
Chr05	irgsp1_rep	mRNA	22670927	22674637	.	+	.	ID=Os05t0461900-00;Name=Os05t0461900-00;Locus_id=Os05g0461900;CGSNL Gene Symbol=MTP11.1;CGSNL Gene Name=METAL TOLERANCE PROTEIN 11.1;Oryzabase Gene Symbol Synonym(s)=OsMTP11.1;Oryzabase Gene Name Synonym(s)=metal tolerance protein 11.1;Note=Metal tolerance protein 6.;Transcript_evidence=Q0DHJ5 (UniProt);ORF_evidence=Q0DHJ5 (UniProt);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: cation transmembrane transporter activity (GO:0008324);InterPro=Cation efflux protein (IPR002524);Oryzabase=13414;TENOR=Os05t0461900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	22670927	22671143	.	+	0	Parent=Os05t0461900-00
Chr05	irgsp1_rep	CDS	22672263	22672378	.	+	2	Parent=Os05t0461900-00
Chr05	irgsp1_rep	CDS	22672836	22673081	.	+	0	Parent=Os05t0461900-00
Chr05	irgsp1_rep	CDS	22673321	22673401	.	+	0	Parent=Os05t0461900-00
Chr05	irgsp1_rep	CDS	22673811	22673927	.	+	0	Parent=Os05t0461900-00
Chr05	irgsp1_rep	CDS	22674284	22674637	.	+	0	Parent=Os05t0461900-00
Chr05	irgsp1_rep	mRNA	22678313	22679102	.	-	.	ID=Os05t0462000-00;Name=Os05t0462000-00;Locus_id=Os05g0462000;Note=Similar to plant-specific domain TIGR01589 family protein.;Transcript_evidence=AK361773 (DDBJ);ORF_evidence=NP_001148858.1 (RefSeq);InterPro=Conserved hypothetical protein CHP01589%2C plant (IPR006476);TENOR=Os05t0462000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	22679062	22679102	.	-	.	Parent=Os05t0462000-00
Chr05	irgsp1_rep	CDS	22679023	22679061	.	-	0	Parent=Os05t0462000-00
Chr05	irgsp1_rep	CDS	22678803	22678908	.	-	0	Parent=Os05t0462000-00
Chr05	irgsp1_rep	CDS	22678357	22678520	.	-	2	Parent=Os05t0462000-00
Chr05	irgsp1_rep	three_prime_UTR	22678313	22678356	.	-	.	Parent=Os05t0462000-00
Chr05	irgsp1_rep	mRNA	22698398	22699658	.	-	.	ID=Os05t0462200-00;Name=Os05t0462200-00;Locus_id=Os05g0462200;Note=Hypothetical conserved gene.;Transcript_evidence=BT037523 (DDBJ);ORF_evidence=Q6L4Z5 (UniProt);TENOR=Os05t0462200-00;KEGG=Os05t0462200-00
Chr05	irgsp1_rep	five_prime_UTR	22699655	22699658	.	-	.	Parent=Os05t0462200-00
Chr05	irgsp1_rep	CDS	22698545	22699654	.	-	0	Parent=Os05t0462200-00
Chr05	irgsp1_rep	three_prime_UTR	22698398	22698544	.	-	.	Parent=Os05t0462200-00
Chr05	irgsp1_rep	mRNA	22706591	22707526	.	-	.	ID=Os05t0462301-00;Name=Os05t0462301-00;Locus_id=Os05g0462301;Note=Similar to predicted protein.;Transcript_evidence=CT836457 (DDBJ%2C Best hit);ORF_evidence=XP_002884741.1 (RefSeq);TENOR=Os05t0462301-00;KEGG=Os05t0462301-00
Chr05	irgsp1_rep	five_prime_UTR	22707526	22707526	.	-	.	Parent=Os05t0462301-00
Chr05	irgsp1_rep	CDS	22707463	22707525	.	-	0	Parent=Os05t0462301-00
Chr05	irgsp1_rep	CDS	22707117	22707173	.	-	0	Parent=Os05t0462301-00
Chr05	irgsp1_rep	three_prime_UTR	22706591	22707116	.	-	.	Parent=Os05t0462301-00
Chr05	irgsp1_rep	mRNA	22710475	22713882	.	-	.	ID=Os05t0462400-01;Name=Os05t0462400-01;Locus_id=Os05g0462400;Oryzabase Gene Name Synonym(s)=lipin N-terminal conserved region family protein;Note=Lipin%2C N-terminal conserved region domain containing protein.;Transcript_evidence=AK099608 (DDBJ%2C Best hit);ORF_evidence=B9FJI4 (UniProt);InterPro=Lipin%2C N-terminal (IPR007651);NIAS_FLcDNA=J013048N24;Oryzabase=22901;Expression=AK099608;TENOR=Os05t0462400-01;KEGG=Os05t0462400-01
Chr05	irgsp1_rep	five_prime_UTR	22713675	22713882	.	-	.	Parent=Os05t0462400-01
Chr05	irgsp1_rep	five_prime_UTR	22713416	22713498	.	-	.	Parent=Os05t0462400-01
Chr05	irgsp1_rep	CDS	22711420	22713415	.	-	0	Parent=Os05t0462400-01
Chr05	irgsp1_rep	CDS	22710757	22711337	.	-	2	Parent=Os05t0462400-01
Chr05	irgsp1_rep	CDS	22710601	22710678	.	-	0	Parent=Os05t0462400-01
Chr05	irgsp1_rep	three_prime_UTR	22710475	22710600	.	-	.	Parent=Os05t0462400-01
Chr05	irgsp1_rep	mRNA	22719262	22721007	.	+	.	ID=Os05t0462500-01;Name=Os05t0462500-01;Locus_id=Os05g0462500;Note=Transmembrane receptor%2C eukaryota domain containing protein.;Transcript_evidence=AK064348 (DDBJ%2C Best hit);ORF_evidence=NP_001150692.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Transmembrane receptor%2C eukaryota (IPR009637);NIAS_FLcDNA=002-108-A01;Expression=AK064348;TENOR=Os05t0462500-01;KEGG=Os05t0462500-01
Chr05	irgsp1_rep	five_prime_UTR	22719262	22719335	.	+	.	Parent=Os05t0462500-01
Chr05	irgsp1_rep	CDS	22719336	22720712	.	+	0	Parent=Os05t0462500-01
Chr05	irgsp1_rep	three_prime_UTR	22720713	22721007	.	+	.	Parent=Os05t0462500-01
Chr05	irgsp1_rep	mRNA	22725975	22734007	.	-	.	ID=Os05t0462600-01;Name=Os05t0462600-01;Locus_id=Os05g0462600;Note=SAC3/GANP family protein.;Transcript_evidence=AK068785 (DDBJ%2C Best hit);ORF_evidence=Q6L516 (UniProt);InterPro=SAC3/GANP/Nin1/mts3/eIF-3 p25 (IPR005062);NIAS_FLcDNA=J013159K24;Expression=AK068785;TENOR=Os05t0462600-01;KEGG=Os05t0462600-01
Chr05	irgsp1_rep	five_prime_UTR	22733642	22734007	.	-	.	Parent=Os05t0462600-01
Chr05	irgsp1_rep	five_prime_UTR	22732993	22733131	.	-	.	Parent=Os05t0462600-01
Chr05	irgsp1_rep	CDS	22732759	22732992	.	-	0	Parent=Os05t0462600-01
Chr05	irgsp1_rep	CDS	22732313	22732666	.	-	0	Parent=Os05t0462600-01
Chr05	irgsp1_rep	CDS	22731544	22731741	.	-	0	Parent=Os05t0462600-01
Chr05	irgsp1_rep	CDS	22731307	22731426	.	-	0	Parent=Os05t0462600-01
Chr05	irgsp1_rep	CDS	22730900	22730998	.	-	0	Parent=Os05t0462600-01
Chr05	irgsp1_rep	CDS	22730518	22730621	.	-	0	Parent=Os05t0462600-01
Chr05	irgsp1_rep	CDS	22729669	22729831	.	-	1	Parent=Os05t0462600-01
Chr05	irgsp1_rep	CDS	22729025	22729492	.	-	0	Parent=Os05t0462600-01
Chr05	irgsp1_rep	CDS	22728760	22728900	.	-	0	Parent=Os05t0462600-01
Chr05	irgsp1_rep	CDS	22728478	22728537	.	-	0	Parent=Os05t0462600-01
Chr05	irgsp1_rep	CDS	22727384	22727514	.	-	0	Parent=Os05t0462600-01
Chr05	irgsp1_rep	CDS	22727164	22727297	.	-	1	Parent=Os05t0462600-01
Chr05	irgsp1_rep	CDS	22726848	22727053	.	-	2	Parent=Os05t0462600-01
Chr05	irgsp1_rep	CDS	22726037	22726132	.	-	0	Parent=Os05t0462600-01
Chr05	irgsp1_rep	three_prime_UTR	22725975	22726036	.	-	.	Parent=Os05t0462600-01
Chr05	irgsp1_rep	mRNA	22725975	22730619	.	-	.	ID=Os05t0462600-02;Name=Os05t0462600-02;Locus_id=Os05g0462600;Note=SAC3/GANP family protein.;Transcript_evidence=AK065879 (DDBJ%2C Best hit);ORF_evidence=XP_002879791.1 (RefSeq);InterPro=SAC3/GANP/Nin1/mts3/eIF-3 p25 (IPR005062);NIAS_FLcDNA=J013049D22;Expression=AK065879;TENOR=Os05t0462600-02;KEGG=Os05t0462600-02
Chr05	irgsp1_rep	five_prime_UTR	22730619	22730619	.	-	.	Parent=Os05t0462600-02
Chr05	irgsp1_rep	CDS	22730518	22730618	.	-	0	Parent=Os05t0462600-02
Chr05	irgsp1_rep	CDS	22729669	22729834	.	-	1	Parent=Os05t0462600-02
Chr05	irgsp1_rep	CDS	22729025	22729492	.	-	0	Parent=Os05t0462600-02
Chr05	irgsp1_rep	CDS	22728760	22728900	.	-	0	Parent=Os05t0462600-02
Chr05	irgsp1_rep	CDS	22728478	22728537	.	-	0	Parent=Os05t0462600-02
Chr05	irgsp1_rep	CDS	22727384	22727514	.	-	0	Parent=Os05t0462600-02
Chr05	irgsp1_rep	CDS	22727164	22727297	.	-	1	Parent=Os05t0462600-02
Chr05	irgsp1_rep	CDS	22727033	22727053	.	-	2	Parent=Os05t0462600-02
Chr05	irgsp1_rep	CDS	22727005	22727012	.	-	2	Parent=Os05t0462600-02
Chr05	irgsp1_rep	three_prime_UTR	22726848	22727004	.	-	.	Parent=Os05t0462600-02
Chr05	irgsp1_rep	three_prime_UTR	22725975	22726132	.	-	.	Parent=Os05t0462600-02
Chr05	irgsp1_rep	mRNA	22736693	22737282	.	-	.	ID=Os05t0462700-01;Name=Os05t0462700-01;Locus_id=Os05g0462700;Note=Similar to Histone H4.;Transcript_evidence=AK105816 (DDBJ%2C Best hit);ORF_evidence=XP_002310853.1 (RefSeq);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H4 (IPR001951),Histone core (IPR007125),Histone-fold (IPR009072),Histone H4%2C conserved site (IPR019809);NIAS_FLcDNA=001-203-C11;Expression=AK105816;TENOR=Os05t0462700-01;KEGG=Os05t0462700-01
Chr05	irgsp1_rep	five_prime_UTR	22737177	22737282	.	-	.	Parent=Os05t0462700-01
Chr05	irgsp1_rep	CDS	22736865	22737176	.	-	0	Parent=Os05t0462700-01
Chr05	irgsp1_rep	three_prime_UTR	22736693	22736864	.	-	.	Parent=Os05t0462700-01
Chr05	irgsp1_rep	mRNA	22743760	22744188	.	-	.	ID=Os05t0462900-00;Name=Os05t0462900-00;Locus_id=Os05g0462900;Note=Similar to Histone H4.;Transcript_evidence=FP095140 (DDBJ);ORF_evidence=B9FJI7 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H4 (IPR001951),Histone core (IPR007125),Histone-fold (IPR009072);TENOR=Os05t0462900-00
Chr05	irgsp1_rep	CDS	22743889	22744188	.	-	0	Parent=Os05t0462900-00
Chr05	irgsp1_rep	three_prime_UTR	22743760	22743888	.	-	.	Parent=Os05t0462900-00
Chr05	irgsp1_rep	mRNA	22745078	22747649	.	-	.	ID=Os05t0463000-01;Name=Os05t0463000-01;Locus_id=Os05g0463000;CGSNL Gene Symbol=RLCK188;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 188;Oryzabase Gene Symbol Synonym(s)=OsRLCK188;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 188;Note=Similar to Receptor protein kinase-like protein.;Transcript_evidence=AK120882 (DDBJ%2C Best hit);ORF_evidence=NP_001148201.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023028F01;Oryzabase=18888;Expression=AK120882;TENOR=Os05t0463000-01;KEGG=Os05t0463000-01
Chr05	irgsp1_rep	five_prime_UTR	22747199	22747649	.	-	.	Parent=Os05t0463000-01
Chr05	irgsp1_rep	CDS	22747054	22747198	.	-	0	Parent=Os05t0463000-01
Chr05	irgsp1_rep	CDS	22746781	22746950	.	-	2	Parent=Os05t0463000-01
Chr05	irgsp1_rep	CDS	22746482	22746671	.	-	0	Parent=Os05t0463000-01
Chr05	irgsp1_rep	CDS	22745994	22746379	.	-	2	Parent=Os05t0463000-01
Chr05	irgsp1_rep	CDS	22745365	22745727	.	-	0	Parent=Os05t0463000-01
Chr05	irgsp1_rep	three_prime_UTR	22745078	22745364	.	-	.	Parent=Os05t0463000-01
Chr05	irgsp1_rep	mRNA	22750564	22751140	.	-	.	ID=Os05t0463100-01;Name=Os05t0463100-01;Locus_id=Os05g0463100;Note=Hypothetical gene.;Transcript_evidence=AK063021 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-110-B05;Expression=AK063021;TENOR=Os05t0463100-01;KEGG=Os05t0463100-01
Chr05	irgsp1_rep	CDS	22750658	22751140	.	-	0	Parent=Os05t0463100-01
Chr05	irgsp1_rep	three_prime_UTR	22750564	22750657	.	-	.	Parent=Os05t0463100-01
Chr05	irgsp1_rep	mRNA	22756240	22758478	.	-	.	ID=Os05t0463300-00;Name=Os05t0463300-00;Locus_id=Os05g0463300;Oryzabase Gene Symbol Synonym(s)=OsSTA152;Note=Hypothetical conserved gene.;Transcript_evidence=BT085081 (DDBJ);ORF_evidence=NP_001174458.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);Oryzabase=19440;TENOR=Os05t0463300-00;KEGG=Os05t0463300-00
Chr05	irgsp1_rep	five_prime_UTR	22758464	22758478	.	-	.	Parent=Os05t0463300-00
Chr05	irgsp1_rep	CDS	22758113	22758463	.	-	0	Parent=Os05t0463300-00
Chr05	irgsp1_rep	CDS	22757789	22758001	.	-	0	Parent=Os05t0463300-00
Chr05	irgsp1_rep	CDS	22757161	22757280	.	-	0	Parent=Os05t0463300-00
Chr05	irgsp1_rep	CDS	22756240	22757064	.	-	0	Parent=Os05t0463300-00
Chr05	irgsp1_rep	mRNA	22759059	22761884	.	+	.	ID=Os05t0463400-01;Name=Os05t0463400-01;Locus_id=Os05g0463400;Note=PWWP domain containing protein.;Transcript_evidence=AK100354 (DDBJ%2C Best hit);ORF_evidence=B8AZ09 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=PWWP (IPR000313),3-hydroxyacid dehydrogenase/reductase (IPR015815);NIAS_FLcDNA=J023083G23;TENOR=Os05t0463400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	22759059	22759060	.	+	.	Parent=Os05t0463400-01
Chr05	irgsp1_rep	CDS	22759061	22759796	.	+	0	Parent=Os05t0463400-01
Chr05	irgsp1_rep	CDS	22759912	22761041	.	+	2	Parent=Os05t0463400-01
Chr05	irgsp1_rep	three_prime_UTR	22761042	22761369	.	+	.	Parent=Os05t0463400-01
Chr05	irgsp1_rep	three_prime_UTR	22761452	22761884	.	+	.	Parent=Os05t0463400-01
Chr05	irgsp1_rep	mRNA	22764522	22766078	.	+	.	ID=Os05t0463500-01;Name=Os05t0463500-01;Locus_id=Os05g0463500;Note=PWWP domain containing protein.;Transcript_evidence=AK108773 (DDBJ%2C Best hit);ORF_evidence=B9FJJ1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=PWWP (IPR000313),3-hydroxyacid dehydrogenase/reductase (IPR015815);NIAS_FLcDNA=002-150-H09;TENOR=Os05t0463500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	22764522	22764624	.	+	.	Parent=Os05t0463500-01
Chr05	irgsp1_rep	CDS	22764625	22764946	.	+	0	Parent=Os05t0463500-01
Chr05	irgsp1_rep	CDS	22765024	22766078	.	+	2	Parent=Os05t0463500-01
Chr05	irgsp1_rep	mRNA	22767271	22769264	.	+	.	ID=Os05t0463600-01;Name=Os05t0463600-01;Locus_id=Os05g0463600;Note=Conserved hypothetical protein.;Transcript_evidence=AK105760 (DDBJ%2C Best hit);ORF_evidence=B9FJJ1 (UniProt);NIAS_FLcDNA=001-202-D06;TENOR=Os05t0463600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	22767271	22768863	.	+	0	Parent=Os05t0463600-01
Chr05	irgsp1_rep	three_prime_UTR	22768864	22769264	.	+	.	Parent=Os05t0463600-01
Chr05	irgsp1_rep	mRNA	22767483	22769233	.	+	.	ID=Os05t0463600-02;Name=Os05t0463600-02;Locus_id=Os05g0463600;Note=Conserved hypothetical protein.;Transcript_evidence=AK099541 (DDBJ%2C Best hit);ORF_evidence=B9FJJ1 (UniProt);NIAS_FLcDNA=J013032J01;TENOR=Os05t0463600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	22767483	22767483	.	+	.	Parent=Os05t0463600-02
Chr05	irgsp1_rep	CDS	22767484	22768863	.	+	0	Parent=Os05t0463600-02
Chr05	irgsp1_rep	three_prime_UTR	22768864	22769233	.	+	.	Parent=Os05t0463600-02
Chr05	irgsp1_rep	mRNA	22770094	22774082	.	-	.	ID=Os05t0463800-01;Name=Os05t0463800-01;Locus_id=Os05g0463800;CGSNL Gene Symbol=HAP3C;CGSNL Gene Name=HAP3C SUBUNIT OF CCAAT-BOX BINDING COMPLEX;Oryzabase Gene Symbol Synonym(s)=OsHAP3C%2C OsNF-YB-4%2C NFYB4%2C OsNF-YB3%2C NF-YB3%2C NFYB3%2C OsHAP3B%2C HAP3B;Oryzabase Gene Name Synonym(s)=rice HAP3C%2C Nuclear transcription factor Y subunit B-4%2C Transcriptional activator HAP3C%2C NUCLEAR FACTOR-Y subunit B3%2C NUCLEAR FACTOR-Y subunit NF-YB3%2C NF-YB subunit 3%2C NF-YB family 3;Note=Similar to Nuclear transcription factor Y subunit B-3.;Transcript_evidence=AK100811 (DDBJ%2C Best hit);ORF_evidence=Q60EQ4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: intracellular (GO:0005622),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Transcription factor%2C NFYB/HAP3%2C conserved site (IPR003956),Transcription factor%2C CBFA/NFYB%2C DNA topoisomerase (IPR003957),Transcription factor CBF/NF-Y/archaeal histone (IPR003958),Histone-fold (IPR009072);NIAS_FLcDNA=J023121O11;Oryzabase=3125;TENOR=Os05t0463800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	22773847	22774082	.	-	.	Parent=Os05t0463800-01
Chr05	irgsp1_rep	five_prime_UTR	22773729	22773743	.	-	.	Parent=Os05t0463800-01
Chr05	irgsp1_rep	CDS	22773478	22773728	.	-	0	Parent=Os05t0463800-01
Chr05	irgsp1_rep	CDS	22773192	22773325	.	-	1	Parent=Os05t0463800-01
Chr05	irgsp1_rep	CDS	22771749	22771753	.	-	2	Parent=Os05t0463800-01
Chr05	irgsp1_rep	three_prime_UTR	22771661	22771748	.	-	.	Parent=Os05t0463800-01
Chr05	irgsp1_rep	three_prime_UTR	22771536	22771586	.	-	.	Parent=Os05t0463800-01
Chr05	irgsp1_rep	three_prime_UTR	22770569	22770626	.	-	.	Parent=Os05t0463800-01
Chr05	irgsp1_rep	three_prime_UTR	22770094	22770477	.	-	.	Parent=Os05t0463800-01
Chr05	irgsp1_rep	mRNA	22770094	22774082	.	-	.	ID=Os05t0463800-02;Name=Os05t0463800-02;Locus_id=Os05g0463800;RAP-DB Gene Symbol Synonym(s)=HAP3B%2C OsHAP3B%2C OsNF-YB-3%2C NFYB3;RAP-DB Gene Name Synonym(s)=HAP3B SUBUNIT OF CCAAT-BOX BINDING COMPLEX%2C rice HAP3B%2C Nuclear transcription factor Y subunit B-3%2C Transcriptional activator HAP3B;CGSNL Gene Symbol=HAP3C;CGSNL Gene Name=HAP3C SUBUNIT OF CCAAT-BOX BINDING COMPLEX;Oryzabase Gene Symbol Synonym(s)=OsHAP3C%2C OsNF-YB-4%2C NFYB4%2C OsNF-YB3%2C NF-YB3%2C NFYB3%2C OsHAP3B%2C HAP3B;Oryzabase Gene Name Synonym(s)=rice HAP3C%2C Nuclear transcription factor Y subunit B-4%2C Transcriptional activator HAP3C%2C NUCLEAR FACTOR-Y subunit B3%2C NUCLEAR FACTOR-Y subunit NF-YB3%2C NF-YB subunit 3%2C NF-YB family 3;Note=CCAAT-box binding transcription factor%2C Chloroplast biogenesis;Transcript_evidence=AB095439,AK100811;ORF_evidence=Q60EQ4,B7EQX8;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein heterodimerization activity (GO:0046982),Cellular Component: intracellular (GO:0005622),Cellular Component: nucleus (GO:0005634);InterPro=Histone-fold (IPR009072),Transcription factor CBF/NF-Y/archaeal histone (IPR003958),Transcription factor%2C NFYB/HAP3%2C conserved site (IPR003956);NIAS_FLcDNA=J023121O11;Manual Curation=December 25%2C 2009;Literature_PMID=14617083,18193457;Oryzabase=3125
Chr05	irgsp1_rep	five_prime_UTR	22773847	22774082	.	-	.	Parent=Os05t0463800-02
Chr05	irgsp1_rep	five_prime_UTR	22773729	22773743	.	-	.	Parent=Os05t0463800-02
Chr05	irgsp1_rep	CDS	22773478	22773728	.	-	0	Parent=Os05t0463800-02
Chr05	irgsp1_rep	CDS	22773196	22773325	.	-	1	Parent=Os05t0463800-02
Chr05	irgsp1_rep	CDS	22772394	22772399	.	-	0	Parent=Os05t0463800-02
Chr05	irgsp1_rep	CDS	22771661	22771753	.	-	0	Parent=Os05t0463800-02
Chr05	irgsp1_rep	CDS	22771536	22771586	.	-	0	Parent=Os05t0463800-02
Chr05	irgsp1_rep	CDS	22770600	22770626	.	-	0	Parent=Os05t0463800-02
Chr05	irgsp1_rep	three_prime_UTR	22770569	22770599	.	-	.	Parent=Os05t0463800-02
Chr05	irgsp1_rep	three_prime_UTR	22770094	22770477	.	-	.	Parent=Os05t0463800-02
Chr05	irgsp1_rep	mRNA	22776072	22779105	.	-	.	ID=Os05t0463900-01;Name=Os05t0463900-01;Locus_id=Os05g0463900;Note=HECT domain containing protein.;Transcript_evidence=AK064382 (DDBJ%2C Best hit);ORF_evidence=XP_002870997.1 (RefSeq);GO=Biological Process: protein modification process (GO:0006464),Cellular Component: intracellular (GO:0005622),Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=HECT (IPR000569);NIAS_FLcDNA=002-108-E02;Expression=AK064382;TENOR=Os05t0463900-01;KEGG=Os05t0463900-01 (EC:6.3.2.19)
Chr05	irgsp1_rep	five_prime_UTR	22779104	22779105	.	-	.	Parent=Os05t0463900-01
Chr05	irgsp1_rep	CDS	22778243	22779103	.	-	0	Parent=Os05t0463900-01
Chr05	irgsp1_rep	CDS	22777931	22778161	.	-	0	Parent=Os05t0463900-01
Chr05	irgsp1_rep	CDS	22777743	22777847	.	-	0	Parent=Os05t0463900-01
Chr05	irgsp1_rep	CDS	22777416	22777496	.	-	0	Parent=Os05t0463900-01
Chr05	irgsp1_rep	CDS	22777267	22777335	.	-	0	Parent=Os05t0463900-01
Chr05	irgsp1_rep	CDS	22777043	22777171	.	-	0	Parent=Os05t0463900-01
Chr05	irgsp1_rep	CDS	22776880	22776963	.	-	0	Parent=Os05t0463900-01
Chr05	irgsp1_rep	CDS	22776405	22776470	.	-	0	Parent=Os05t0463900-01
Chr05	irgsp1_rep	three_prime_UTR	22776072	22776404	.	-	.	Parent=Os05t0463900-01
Chr05	irgsp1_rep	mRNA	22782081	22783397	.	-	.	ID=Os05t0464001-00;Name=Os05t0464001-00;Locus_id=Os05g0464001;Note=Conserved hypothetical protein.;Transcript_evidence=BT036346 (DDBJ);ORF_evidence=XP_002441232.1 (RefSeq);TENOR=Os05t0464001-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	22783320	22783397	.	-	.	Parent=Os05t0464001-00
Chr05	irgsp1_rep	CDS	22783304	22783319	.	-	0	Parent=Os05t0464001-00
Chr05	irgsp1_rep	CDS	22783068	22783201	.	-	2	Parent=Os05t0464001-00
Chr05	irgsp1_rep	CDS	22782731	22782838	.	-	0	Parent=Os05t0464001-00
Chr05	irgsp1_rep	three_prime_UTR	22782575	22782730	.	-	.	Parent=Os05t0464001-00
Chr05	irgsp1_rep	three_prime_UTR	22782081	22782336	.	-	.	Parent=Os05t0464001-00
Chr05	irgsp1_rep	mRNA	22789273	22793935	.	+	.	ID=Os05t0464100-01;Name=Os05t0464100-01;Locus_id=Os05g0464100;CGSNL Gene Symbol=MCM8;CGSNL Gene Name=MINI-CHROMOSOME MAINTENANCE PROTEIN 8;Oryzabase Gene Symbol Synonym(s)=OsMCM8;Oryzabase Gene Name Synonym(s)=mini-Chromosome maintenance protein 8;Note=MCM family protein.;Transcript_evidence=AK108033 (DDBJ%2C Best hit);ORF_evidence=NP_187577.1 (RefSeq);GO=Biological Process: DNA replication (GO:0006260),Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP binding (GO:0005524);InterPro=Mini-Chromosome maintenance%2C DNA-dependent ATPase (IPR001208),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),Mini-Chromosome maintenance%2C conserved site (IPR018525);NIAS_FLcDNA=002-137-B12;Oryzabase=7361;Expression=AK108033;TENOR=Os05t0464100-01;KEGG=Os05t0464100-01
Chr05	irgsp1_rep	five_prime_UTR	22789273	22789407	.	+	.	Parent=Os05t0464100-01
Chr05	irgsp1_rep	CDS	22789408	22789605	.	+	0	Parent=Os05t0464100-01
Chr05	irgsp1_rep	CDS	22790193	22790324	.	+	0	Parent=Os05t0464100-01
Chr05	irgsp1_rep	CDS	22790435	22790546	.	+	0	Parent=Os05t0464100-01
Chr05	irgsp1_rep	CDS	22790633	22790853	.	+	2	Parent=Os05t0464100-01
Chr05	irgsp1_rep	CDS	22790929	22791094	.	+	0	Parent=Os05t0464100-01
Chr05	irgsp1_rep	CDS	22791870	22792115	.	+	2	Parent=Os05t0464100-01
Chr05	irgsp1_rep	CDS	22792745	22792840	.	+	2	Parent=Os05t0464100-01
Chr05	irgsp1_rep	CDS	22792937	22793089	.	+	2	Parent=Os05t0464100-01
Chr05	irgsp1_rep	CDS	22793661	22793782	.	+	2	Parent=Os05t0464100-01
Chr05	irgsp1_rep	three_prime_UTR	22793783	22793935	.	+	.	Parent=Os05t0464100-01
Chr05	irgsp1_rep	mRNA	22789296	22797537	.	-	.	ID=Os05t0464150-00;Name=Os05t0464150-00;Locus_id=Os05g0464150;Note=Hypothetical protein.;Transcript_evidence=tplb0022b12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0464150-00
Chr05	irgsp1_rep	five_prime_UTR	22797415	22797537	.	-	.	Parent=Os05t0464150-00
Chr05	irgsp1_rep	five_prime_UTR	22796910	22797085	.	-	.	Parent=Os05t0464150-00
Chr05	irgsp1_rep	five_prime_UTR	22796411	22796558	.	-	.	Parent=Os05t0464150-00
Chr05	irgsp1_rep	five_prime_UTR	22796085	22796291	.	-	.	Parent=Os05t0464150-00
Chr05	irgsp1_rep	five_prime_UTR	22795665	22795816	.	-	.	Parent=Os05t0464150-00
Chr05	irgsp1_rep	five_prime_UTR	22793828	22793946	.	-	.	Parent=Os05t0464150-00
Chr05	irgsp1_rep	five_prime_UTR	22793659	22793739	.	-	.	Parent=Os05t0464150-00
Chr05	irgsp1_rep	five_prime_UTR	22792949	22793086	.	-	.	Parent=Os05t0464150-00
Chr05	irgsp1_rep	five_prime_UTR	22792828	22792851	.	-	.	Parent=Os05t0464150-00
Chr05	irgsp1_rep	CDS	22792743	22792827	.	-	0	Parent=Os05t0464150-00
Chr05	irgsp1_rep	CDS	22791962	22792113	.	-	2	Parent=Os05t0464150-00
Chr05	irgsp1_rep	three_prime_UTR	22791872	22791961	.	-	.	Parent=Os05t0464150-00
Chr05	irgsp1_rep	three_prime_UTR	22790929	22791096	.	-	.	Parent=Os05t0464150-00
Chr05	irgsp1_rep	three_prime_UTR	22790633	22790853	.	-	.	Parent=Os05t0464150-00
Chr05	irgsp1_rep	three_prime_UTR	22790456	22790546	.	-	.	Parent=Os05t0464150-00
Chr05	irgsp1_rep	three_prime_UTR	22790164	22790348	.	-	.	Parent=Os05t0464150-00
Chr05	irgsp1_rep	three_prime_UTR	22789296	22789571	.	-	.	Parent=Os05t0464150-00
Chr05	irgsp1_rep	mRNA	22800714	22800965	.	-	.	ID=Os05t0464200-00;Name=Os05t0464200-00;Locus_id=Os05g0464200;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001055778.2 (RefSeq);TENOR=Os05t0464200-00;KEGG=Os05t0464200-00
Chr05	irgsp1_rep	CDS	22800714	22800965	.	-	0	Parent=Os05t0464200-00
Chr05	irgsp1_rep	mRNA	22807366	22807937	.	-	.	ID=Os05t0464300-01;Name=Os05t0464300-01;Locus_id=Os05g0464300;Note=Conserved hypothetical protein.;Transcript_evidence=AK062470 (DDBJ%2C Best hit);ORF_evidence=A2Y5I9 (UniProt);NIAS_FLcDNA=001-103-E07;Expression=AK062470;TENOR=Os05t0464300-01;KEGG=Os05t0464300-01
Chr05	irgsp1_rep	five_prime_UTR	22807850	22807937	.	-	.	Parent=Os05t0464300-01
Chr05	irgsp1_rep	CDS	22807625	22807849	.	-	0	Parent=Os05t0464300-01
Chr05	irgsp1_rep	three_prime_UTR	22807366	22807624	.	-	.	Parent=Os05t0464300-01
Chr05	irgsp1_rep	mRNA	22811497	22811754	.	+	.	ID=Os05t0464350-00;Name=Os05t0464350-00;Locus_id=Os05g0464350;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os05t0464350-00
Chr05	irgsp1_rep	CDS	22811497	22811754	.	+	0	Parent=Os05t0464350-00
Chr05	irgsp1_rep	mRNA	22811967	22812266	.	-	.	ID=Os05t0464400-00;Name=Os05t0464400-00;Locus_id=Os05g0464400;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B8AZ15 (UniProt);TENOR=Os05t0464400-00;KEGG=Os05t0464400-00
Chr05	irgsp1_rep	CDS	22811967	22812266	.	-	0	Parent=Os05t0464400-00
Chr05	irgsp1_rep	mRNA	22826374	22826588	.	-	.	ID=Os05t0464550-00;Name=Os05t0464550-00;Locus_id=Os05g0464550;Note=Conserved hypothetical protein.;Transcript_evidence=FP095357 (DDBJ);ORF_evidence=B9FJJ4 (UniProt);TENOR=Os05t0464550-00
Chr05	irgsp1_rep	five_prime_UTR	22826569	22826588	.	-	.	Parent=Os05t0464550-00
Chr05	irgsp1_rep	CDS	22826374	22826568	.	-	0	Parent=Os05t0464550-00
Chr05	irgsp1_rep	mRNA	22828282	22828938	.	+	.	ID=Os05t0465000-01;Name=Os05t0465000-01;Locus_id=Os05g0465000;Note=Conserved hypothetical protein.;Transcript_evidence=AK111286 (DDBJ%2C Best hit);ORF_evidence=A2Y5J2 (UniProt);NIAS_FLcDNA=002-180-H09;Expression=AK111286;TENOR=Os05t0465000-01;KEGG=Os05t0465000-01
Chr05	irgsp1_rep	five_prime_UTR	22828282	22828438	.	+	.	Parent=Os05t0465000-01
Chr05	irgsp1_rep	CDS	22828439	22828681	.	+	0	Parent=Os05t0465000-01
Chr05	irgsp1_rep	three_prime_UTR	22828682	22828938	.	+	.	Parent=Os05t0465000-01
Chr05	irgsp1_rep	mRNA	22834991	22842010	.	-	.	ID=Os05t0465100-01;Name=Os05t0465100-01;Locus_id=Os05g0465100;Note=RabGAP/TBC domain containing protein.;Transcript_evidence=AK065821 (DDBJ%2C Best hit);ORF_evidence=NP_567014.2 (RefSeq);GO=Biological Process: regulation of Rab GTPase activity (GO:0032313),Cellular Component: intracellular (GO:0005622),Molecular Function: Rab GTPase activator activity (GO:0005097);InterPro=Rab-GAP/TBC domain (IPR000195);NIAS_FLcDNA=J013043G04;Expression=AK065821;TENOR=Os05t0465100-01;KEGG=Os05t0465100-01
Chr05	irgsp1_rep	five_prime_UTR	22841838	22842010	.	-	.	Parent=Os05t0465100-01
Chr05	irgsp1_rep	CDS	22841794	22841837	.	-	0	Parent=Os05t0465100-01
Chr05	irgsp1_rep	CDS	22841166	22841235	.	-	1	Parent=Os05t0465100-01
Chr05	irgsp1_rep	CDS	22840589	22841080	.	-	0	Parent=Os05t0465100-01
Chr05	irgsp1_rep	CDS	22840319	22840492	.	-	0	Parent=Os05t0465100-01
Chr05	irgsp1_rep	CDS	22840065	22840178	.	-	0	Parent=Os05t0465100-01
Chr05	irgsp1_rep	CDS	22839859	22839917	.	-	0	Parent=Os05t0465100-01
Chr05	irgsp1_rep	CDS	22839687	22839753	.	-	1	Parent=Os05t0465100-01
Chr05	irgsp1_rep	CDS	22839521	22839572	.	-	0	Parent=Os05t0465100-01
Chr05	irgsp1_rep	CDS	22839325	22839417	.	-	2	Parent=Os05t0465100-01
Chr05	irgsp1_rep	CDS	22838569	22838652	.	-	2	Parent=Os05t0465100-01
Chr05	irgsp1_rep	CDS	22838053	22838465	.	-	2	Parent=Os05t0465100-01
Chr05	irgsp1_rep	CDS	22837773	22837834	.	-	0	Parent=Os05t0465100-01
Chr05	irgsp1_rep	CDS	22837470	22837539	.	-	1	Parent=Os05t0465100-01
Chr05	irgsp1_rep	CDS	22837066	22837146	.	-	0	Parent=Os05t0465100-01
Chr05	irgsp1_rep	CDS	22836888	22836989	.	-	0	Parent=Os05t0465100-01
Chr05	irgsp1_rep	CDS	22836270	22836406	.	-	0	Parent=Os05t0465100-01
Chr05	irgsp1_rep	CDS	22835846	22835963	.	-	1	Parent=Os05t0465100-01
Chr05	irgsp1_rep	CDS	22835357	22835617	.	-	0	Parent=Os05t0465100-01
Chr05	irgsp1_rep	three_prime_UTR	22834991	22835356	.	-	.	Parent=Os05t0465100-01
Chr05	irgsp1_rep	mRNA	22835352	22841908	.	+	.	ID=Os05t0465250-00;Name=Os05t0465250-00;Locus_id=Os05g0465250;Note=Hypothetical protein.;Transcript_evidence=tplb0061a18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0465250-00
Chr05	irgsp1_rep	five_prime_UTR	22835352	22835593	.	+	.	Parent=Os05t0465250-00
Chr05	irgsp1_rep	five_prime_UTR	22835817	22835947	.	+	.	Parent=Os05t0465250-00
Chr05	irgsp1_rep	five_prime_UTR	22836254	22836414	.	+	.	Parent=Os05t0465250-00
Chr05	irgsp1_rep	five_prime_UTR	22836894	22836985	.	+	.	Parent=Os05t0465250-00
Chr05	irgsp1_rep	five_prime_UTR	22837062	22837130	.	+	.	Parent=Os05t0465250-00
Chr05	irgsp1_rep	five_prime_UTR	22837451	22837538	.	+	.	Parent=Os05t0465250-00
Chr05	irgsp1_rep	five_prime_UTR	22837772	22837833	.	+	.	Parent=Os05t0465250-00
Chr05	irgsp1_rep	five_prime_UTR	22838051	22838456	.	+	.	Parent=Os05t0465250-00
Chr05	irgsp1_rep	five_prime_UTR	22838557	22838652	.	+	.	Parent=Os05t0465250-00
Chr05	irgsp1_rep	five_prime_UTR	22839325	22839409	.	+	.	Parent=Os05t0465250-00
Chr05	irgsp1_rep	five_prime_UTR	22839513	22839570	.	+	.	Parent=Os05t0465250-00
Chr05	irgsp1_rep	five_prime_UTR	22839685	22839750	.	+	.	Parent=Os05t0465250-00
Chr05	irgsp1_rep	five_prime_UTR	22839852	22839922	.	+	.	Parent=Os05t0465250-00
Chr05	irgsp1_rep	five_prime_UTR	22840072	22840175	.	+	.	Parent=Os05t0465250-00
Chr05	irgsp1_rep	five_prime_UTR	22840311	22840494	.	+	.	Parent=Os05t0465250-00
Chr05	irgsp1_rep	five_prime_UTR	22840583	22840862	.	+	.	Parent=Os05t0465250-00
Chr05	irgsp1_rep	CDS	22840863	22841083	.	+	0	Parent=Os05t0465250-00
Chr05	irgsp1_rep	CDS	22841169	22841172	.	+	1	Parent=Os05t0465250-00
Chr05	irgsp1_rep	three_prime_UTR	22841173	22841234	.	+	.	Parent=Os05t0465250-00
Chr05	irgsp1_rep	three_prime_UTR	22841793	22841908	.	+	.	Parent=Os05t0465250-00
Chr05	irgsp1_rep	mRNA	22853860	22855481	.	-	.	ID=Os05t0465400-01;Name=Os05t0465400-01;Locus_id=Os05g0465400;Note=Protein of unknown function DUF1218 family protein.;Transcript_evidence=AK070343 (DDBJ%2C Best hit);ORF_evidence=A2Y5J4 (UniProt);InterPro=Protein of unknown function DUF1218 (IPR009606);NIAS_FLcDNA=J023052E24;Expression=AK070343;TENOR=Os05t0465400-01;KEGG=Os05t0465400-01
Chr05	irgsp1_rep	five_prime_UTR	22855459	22855481	.	-	.	Parent=Os05t0465400-01
Chr05	irgsp1_rep	five_prime_UTR	22855046	22855136	.	-	.	Parent=Os05t0465400-01
Chr05	irgsp1_rep	CDS	22854953	22855045	.	-	0	Parent=Os05t0465400-01
Chr05	irgsp1_rep	CDS	22854636	22854850	.	-	0	Parent=Os05t0465400-01
Chr05	irgsp1_rep	CDS	22854260	22854533	.	-	1	Parent=Os05t0465400-01
Chr05	irgsp1_rep	three_prime_UTR	22853860	22854259	.	-	.	Parent=Os05t0465400-01
Chr05	irgsp1_rep	mRNA	22856741	22856813	.	-	.	ID=Os05t0465601-00;Name=Os05t0465601-00;Locus_id=Os05g0465601;Note=Non-protein coding transcript.;Transcript_evidence=X06284 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0465601-00
Chr05	irgsp1_rep	exon	22856741	22856813	.	-	.	Parent=Os05t0465601-00
Chr05	irgsp1_rep	mRNA	22860163	22865056	.	+	.	ID=Os05t0465800-01;Name=Os05t0465800-01;Locus_id=Os05g0465800;CGSNL Gene Symbol=RBOHD;CGSNL Gene Name=RESPIRATORY BURST OXIDASE HOMOLOG D;Oryzabase Gene Symbol Synonym(s)=rbohD%2C OsrbohD%2C Os rbohD%2C OsRbohD%2C OsNox4%2C OsRboh4%2C Rboh4;Oryzabase Gene Name Synonym(s)=Respiratory Burst Oxidase Homolog D%2C NADPH oxidase 4;Note=Similar to RbohAp108.;Transcript_evidence=AK072353 (DDBJ%2C Best hit);ORF_evidence=Q0MRQ8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: iron ion binding (GO:0005506),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: oxidoreductase activity%2C acting on NADH or NADPH%2C oxygen as acceptor (GO:0050664);InterPro=CytoChrome b245%2C heavy chain (IPR000778),Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),FAD-binding 8 (IPR013112),Ferric reductase%2C NAD binding (IPR013121),Flavoprotein transmembrane component (IPR013130),NADPH oxidase Respiratory burst (IPR013623),Ferredoxin reductase-type FAD-binding domain (IPR017927),Riboflavin synthase-like beta-barrel (IPR017938),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J023055G12;Oryzabase=10485;Expression=AK072353;TENOR=Os05t0465800-01;KEGG=Os05t0465800-01
Chr05	irgsp1_rep	five_prime_UTR	22860163	22860288	.	+	.	Parent=Os05t0465800-01
Chr05	irgsp1_rep	CDS	22860289	22860589	.	+	0	Parent=Os05t0465800-01
Chr05	irgsp1_rep	CDS	22861390	22861552	.	+	2	Parent=Os05t0465800-01
Chr05	irgsp1_rep	CDS	22861629	22861677	.	+	1	Parent=Os05t0465800-01
Chr05	irgsp1_rep	CDS	22861771	22861884	.	+	0	Parent=Os05t0465800-01
Chr05	irgsp1_rep	CDS	22861957	22862379	.	+	0	Parent=Os05t0465800-01
Chr05	irgsp1_rep	CDS	22862452	22862838	.	+	0	Parent=Os05t0465800-01
Chr05	irgsp1_rep	CDS	22862922	22863017	.	+	0	Parent=Os05t0465800-01
Chr05	irgsp1_rep	CDS	22863123	22863238	.	+	0	Parent=Os05t0465800-01
Chr05	irgsp1_rep	CDS	22863315	22863417	.	+	1	Parent=Os05t0465800-01
Chr05	irgsp1_rep	CDS	22863537	22863625	.	+	0	Parent=Os05t0465800-01
Chr05	irgsp1_rep	CDS	22863731	22863881	.	+	1	Parent=Os05t0465800-01
Chr05	irgsp1_rep	CDS	22863962	22864111	.	+	0	Parent=Os05t0465800-01
Chr05	irgsp1_rep	CDS	22864202	22864330	.	+	0	Parent=Os05t0465800-01
Chr05	irgsp1_rep	CDS	22864421	22864499	.	+	0	Parent=Os05t0465800-01
Chr05	irgsp1_rep	CDS	22864580	22864689	.	+	2	Parent=Os05t0465800-01
Chr05	irgsp1_rep	three_prime_UTR	22864690	22865056	.	+	.	Parent=Os05t0465800-01
Chr05	irgsp1_rep	mRNA	22861389	22864343	.	-	.	ID=Os05t0465900-00;Name=Os05t0465900-00;Locus_id=Os05g0465900;Note=Non-protein coding transcript.;Transcript_evidence=tplb0025i04 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os05t0465900-00
Chr05	irgsp1_rep	exon	22864220	22864343	.	-	.	Parent=Os05t0465900-00
Chr05	irgsp1_rep	exon	22863960	22864127	.	-	.	Parent=Os05t0465900-00
Chr05	irgsp1_rep	exon	22863712	22863889	.	-	.	Parent=Os05t0465900-00
Chr05	irgsp1_rep	exon	22863333	22863474	.	-	.	Parent=Os05t0465900-00
Chr05	irgsp1_rep	exon	22863036	22863255	.	-	.	Parent=Os05t0465900-00
Chr05	irgsp1_rep	exon	22862444	22862844	.	-	.	Parent=Os05t0465900-00
Chr05	irgsp1_rep	exon	22861974	22862369	.	-	.	Parent=Os05t0465900-00
Chr05	irgsp1_rep	exon	22861717	22861904	.	-	.	Parent=Os05t0465900-00
Chr05	irgsp1_rep	exon	22861389	22861543	.	-	.	Parent=Os05t0465900-00
Chr05	irgsp1_rep	mRNA	22870780	22873087	.	+	.	ID=Os05t0466000-01;Name=Os05t0466000-01;Locus_id=Os05g0466000;Note=Non-protein coding transcript.;Transcript_evidence=AK064529 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-111-H01;TENOR=Os05t0466000-01
Chr05	irgsp1_rep	exon	22870780	22872127	.	+	.	Parent=Os05t0466000-01
Chr05	irgsp1_rep	exon	22872502	22872627	.	+	.	Parent=Os05t0466000-01
Chr05	irgsp1_rep	exon	22872732	22873087	.	+	.	Parent=Os05t0466000-01
Chr05	irgsp1_rep	mRNA	22874242	22875817	.	-	.	ID=Os05t0466100-01;Name=Os05t0466100-01;Locus_id=Os05g0466100;Oryzabase Gene Symbol Synonym(s)=OsCCT17%2C OsCMF5;Oryzabase Gene Name Synonym(s)=CCT domain-containing gene 17%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 17%2C CCT domain protein 17%2C CCT MOTIF FAMILY (CMF) gene 5;Note=CCT domain containing protein.;Transcript_evidence=AK108647 (DDBJ%2C Best hit);ORF_evidence=B8AZ18 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=CCT domain (IPR010402);NIAS_FLcDNA=002-148-B09;Oryzabase=19172;Expression=AK108647;TENOR=Os05t0466100-01;KEGG=Os05t0466100-01
Chr05	irgsp1_rep	five_prime_UTR	22875786	22875817	.	-	.	Parent=Os05t0466100-01
Chr05	irgsp1_rep	CDS	22875360	22875785	.	-	0	Parent=Os05t0466100-01
Chr05	irgsp1_rep	CDS	22875082	22875261	.	-	0	Parent=Os05t0466100-01
Chr05	irgsp1_rep	CDS	22874614	22874982	.	-	0	Parent=Os05t0466100-01
Chr05	irgsp1_rep	three_prime_UTR	22874242	22874613	.	-	.	Parent=Os05t0466100-01
Chr05	irgsp1_rep	mRNA	22878707	22881780	.	-	.	ID=Os05t0466200-01;Name=Os05t0466200-01;Locus_id=Os05g0466200;Note=KIP1-like domain containing protein.;Transcript_evidence=AK072496 (DDBJ%2C Best hit);ORF_evidence=B8AZ19 (UniProt);InterPro=KIP1-like (IPR011684);NIAS_FLcDNA=J023133J17;Expression=AK072496;TENOR=Os05t0466200-01;KEGG=Os05t0466200-01
Chr05	irgsp1_rep	five_prime_UTR	22881579	22881780	.	-	.	Parent=Os05t0466200-01
Chr05	irgsp1_rep	CDS	22881485	22881578	.	-	0	Parent=Os05t0466200-01
Chr05	irgsp1_rep	CDS	22878848	22881363	.	-	2	Parent=Os05t0466200-01
Chr05	irgsp1_rep	three_prime_UTR	22878707	22878847	.	-	.	Parent=Os05t0466200-01
Chr05	irgsp1_rep	mRNA	22903115	22903786	.	+	.	ID=Os05t0466600-01;Name=Os05t0466600-01;Locus_id=Os05g0466600;Note=Similar to Histone H4.;Transcript_evidence=AK119240 (DDBJ%2C Best hit);ORF_evidence=XP_002310853.1 (RefSeq);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H4 (IPR001951),Histone core (IPR007125),Histone-fold (IPR009072),Histone H4%2C conserved site (IPR019809);NIAS_FLcDNA=001-120-A04;Expression=AK119240;TENOR=Os05t0466600-01;KEGG=Os05t0466600-01
Chr05	irgsp1_rep	five_prime_UTR	22903115	22903204	.	+	.	Parent=Os05t0466600-01
Chr05	irgsp1_rep	CDS	22903205	22903516	.	+	0	Parent=Os05t0466600-01
Chr05	irgsp1_rep	three_prime_UTR	22903517	22903786	.	+	.	Parent=Os05t0466600-01
Chr05	irgsp1_rep	mRNA	22904354	22904819	.	-	.	ID=Os05t0466700-01;Name=Os05t0466700-01;Locus_id=Os05g0466700;Note=Non-protein coding transcript.;Transcript_evidence=AK242389 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080053F23;TENOR=Os05t0466700-01
Chr05	irgsp1_rep	exon	22904354	22904819	.	-	.	Parent=Os05t0466700-01
Chr05	irgsp1_rep	mRNA	22907941	22910650	.	+	.	ID=Os05t0466800-01;Name=Os05t0466800-01;Locus_id=Os05g0466800;Note=Similar to CTD small phosphatase-like protein.;Transcript_evidence=AK243556 (DDBJ%2C Best hit);ORF_evidence=B6T776 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: phosphatase activity (GO:0016791);InterPro=NLI interacting factor (IPR004274),Dullard phosphatase domain%2C eukaryotic (IPR011948),HAD-like domain (IPR023214);NIAS_FLcDNA=J100079O07;TENOR=Os05t0466800-01;KEGG=Os05t0466800-01
Chr05	irgsp1_rep	five_prime_UTR	22907941	22908138	.	+	.	Parent=Os05t0466800-01
Chr05	irgsp1_rep	CDS	22908139	22908471	.	+	0	Parent=Os05t0466800-01
Chr05	irgsp1_rep	CDS	22909002	22909126	.	+	0	Parent=Os05t0466800-01
Chr05	irgsp1_rep	CDS	22909215	22909339	.	+	1	Parent=Os05t0466800-01
Chr05	irgsp1_rep	CDS	22909426	22909507	.	+	2	Parent=Os05t0466800-01
Chr05	irgsp1_rep	CDS	22909931	22910084	.	+	1	Parent=Os05t0466800-01
Chr05	irgsp1_rep	CDS	22910173	22910307	.	+	0	Parent=Os05t0466800-01
Chr05	irgsp1_rep	three_prime_UTR	22910308	22910650	.	+	.	Parent=Os05t0466800-01
Chr05	irgsp1_rep	mRNA	22910891	22915038	.	-	.	ID=Os05t0466900-01;Name=Os05t0466900-01;Locus_id=Os05g0466900;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK063502 (DDBJ%2C Best hit);ORF_evidence=NP_001148168.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-116-E09;Expression=AK063502;TENOR=Os05t0466900-01;KEGG=Os05t0466900-01 (EC:2.7.12.1)
Chr05	irgsp1_rep	five_prime_UTR	22915038	22915038	.	-	.	Parent=Os05t0466900-01
Chr05	irgsp1_rep	CDS	22914512	22915037	.	-	0	Parent=Os05t0466900-01
Chr05	irgsp1_rep	CDS	22914016	22914319	.	-	2	Parent=Os05t0466900-01
Chr05	irgsp1_rep	CDS	22913645	22913924	.	-	1	Parent=Os05t0466900-01
Chr05	irgsp1_rep	CDS	22913439	22913546	.	-	0	Parent=Os05t0466900-01
Chr05	irgsp1_rep	CDS	22912807	22913085	.	-	0	Parent=Os05t0466900-01
Chr05	irgsp1_rep	CDS	22912025	22912168	.	-	0	Parent=Os05t0466900-01
Chr05	irgsp1_rep	CDS	22911143	22911319	.	-	0	Parent=Os05t0466900-01
Chr05	irgsp1_rep	three_prime_UTR	22910891	22911142	.	-	.	Parent=Os05t0466900-01
Chr05	irgsp1_rep	mRNA	22919336	22924421	.	-	.	ID=Os05t0467000-01;Name=Os05t0467000-01;Locus_id=Os05g0467000;CGSNL Gene Symbol=CDPK16;CGSNL Gene Name=CALCIUM-DEPENDENT PROTEIN KINASE 16;Oryzabase Gene Symbol Synonym(s)=OsCDPK16%2C OsCPK16;Oryzabase Gene Name Synonym(s)=calcium-dependent protein kinase;Note=Similar to Calcium-dependent protein kinase.;Transcript_evidence=AK101942 (DDBJ%2C Best hit);ORF_evidence=B2KTA8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Calcium-binding EF-hand (IPR002048),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),EF-hand-like domain (IPR011992),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J033074I19;Oryzabase=8067;Expression=AK101942;TENOR=Os05t0467000-01;KEGG=Os05t0467000-01
Chr05	irgsp1_rep	five_prime_UTR	22924248	22924421	.	-	.	Parent=Os05t0467000-01
Chr05	irgsp1_rep	CDS	22923566	22924247	.	-	0	Parent=Os05t0467000-01
Chr05	irgsp1_rep	CDS	22921964	22922107	.	-	2	Parent=Os05t0467000-01
Chr05	irgsp1_rep	CDS	22921728	22921880	.	-	2	Parent=Os05t0467000-01
Chr05	irgsp1_rep	CDS	22920905	22921020	.	-	2	Parent=Os05t0467000-01
Chr05	irgsp1_rep	CDS	22920653	22920820	.	-	0	Parent=Os05t0467000-01
Chr05	irgsp1_rep	CDS	22919883	22920113	.	-	0	Parent=Os05t0467000-01
Chr05	irgsp1_rep	CDS	22919648	22919797	.	-	0	Parent=Os05t0467000-01
Chr05	irgsp1_rep	three_prime_UTR	22919336	22919647	.	-	.	Parent=Os05t0467000-01
Chr05	irgsp1_rep	mRNA	22919407	22920073	.	-	.	ID=Os05t0467000-02;Name=Os05t0467000-02;Locus_id=Os05g0467000;CGSNL Gene Symbol=CDPK16;CGSNL Gene Name=CALCIUM-DEPENDENT PROTEIN KINASE 16;Oryzabase Gene Symbol Synonym(s)=OsCDPK16%2C OsCPK16;Oryzabase Gene Name Synonym(s)=calcium-dependent protein kinase;Note=Similar to Calcium-dependent protein kinase.;Transcript_evidence=AK059122 (DDBJ%2C Best hit);ORF_evidence=B2KTA8 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=001-022-F07;Oryzabase=8067;Expression=AK059122;TENOR=Os05t0467000-02;KEGG=Os05t0467000-02
Chr05	irgsp1_rep	five_prime_UTR	22920072	22920073	.	-	.	Parent=Os05t0467000-02
Chr05	irgsp1_rep	CDS	22919883	22920071	.	-	0	Parent=Os05t0467000-02
Chr05	irgsp1_rep	CDS	22919648	22919797	.	-	0	Parent=Os05t0467000-02
Chr05	irgsp1_rep	three_prime_UTR	22919407	22919647	.	-	.	Parent=Os05t0467000-02
Chr05	irgsp1_rep	mRNA	22923563	22924183	.	+	.	ID=Os05t0467150-00;Name=Os05t0467150-00;Locus_id=Os05g0467150;Note=Hypothetical gene.;Transcript_evidence=BT084847 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0467150-00
Chr05	irgsp1_rep	five_prime_UTR	22923563	22923563	.	+	.	Parent=Os05t0467150-00
Chr05	irgsp1_rep	CDS	22923564	22924183	.	+	0	Parent=Os05t0467150-00
Chr05	irgsp1_rep	mRNA	22932713	22935696	.	+	.	ID=Os05t0467300-01;Name=Os05t0467300-01;Locus_id=Os05g0467300;Note=SelT/selW/selH selenoprotein family protein.;Transcript_evidence=AK098945 (DDBJ%2C Best hit),AK061873 (DDBJ%2C Best hit);ORF_evidence=NP_001151493.1 (RefSeq);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: selenium binding (GO:0008430);InterPro=Selenoprotein%2C Rdx type (IPR011893),Thioredoxin-like fold (IPR012336),Selenoprotein T (IPR019389);NIAS_FLcDNA=J013050H09,001-041-A06;Expression=AK098945;TENOR=Os05t0467300-01;KEGG=Os05t0467300-01
Chr05	irgsp1_rep	five_prime_UTR	22932713	22932802	.	+	.	Parent=Os05t0467300-01
Chr05	irgsp1_rep	CDS	22932803	22933075	.	+	0	Parent=Os05t0467300-01
Chr05	irgsp1_rep	CDS	22933174	22933241	.	+	0	Parent=Os05t0467300-01
Chr05	irgsp1_rep	CDS	22934745	22935060	.	+	1	Parent=Os05t0467300-01
Chr05	irgsp1_rep	CDS	22935352	22935468	.	+	0	Parent=Os05t0467300-01
Chr05	irgsp1_rep	three_prime_UTR	22935469	22935696	.	+	.	Parent=Os05t0467300-01
Chr05	irgsp1_rep	mRNA	22937305	22940650	.	+	.	ID=Os05t0467400-01;Name=Os05t0467400-01;Locus_id=Os05g0467400;Note=Domain of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK111458 (DDBJ%2C Best hit);ORF_evidence=B8AZ23 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=002-183-C09;TENOR=Os05t0467400-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	22937305	22937306	.	+	.	Parent=Os05t0467400-01
Chr05	irgsp1_rep	CDS	22937307	22938555	.	+	0	Parent=Os05t0467400-01
Chr05	irgsp1_rep	CDS	22939319	22939398	.	+	2	Parent=Os05t0467400-01
Chr05	irgsp1_rep	three_prime_UTR	22939399	22939429	.	+	.	Parent=Os05t0467400-01
Chr05	irgsp1_rep	three_prime_UTR	22940309	22940650	.	+	.	Parent=Os05t0467400-01
Chr05	irgsp1_rep	mRNA	22942258	22944134	.	-	.	ID=Os05t0467450-00;Name=Os05t0467450-00;Locus_id=Os05g0467450;Note=Non-protein coding transcript.;Transcript_evidence=tplb0056i14 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os05t0467450-00
Chr05	irgsp1_rep	exon	22944064	22944134	.	-	.	Parent=Os05t0467450-00
Chr05	irgsp1_rep	exon	22942836	22943966	.	-	.	Parent=Os05t0467450-00
Chr05	irgsp1_rep	exon	22942258	22942471	.	-	.	Parent=Os05t0467450-00
Chr05	irgsp1_rep	mRNA	22942735	22944105	.	+	.	ID=Os05t0467501-00;Name=Os05t0467501-00;Locus_id=Os05g0467501;Note=Similar to Elongation factor 2.;Transcript_evidence=AK356124 (DDBJ);ORF_evidence=B6U0S1 (UniProt);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Protein synthesis factor%2C GTP-binding (IPR000795),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000);TENOR=Os05t0467501-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	22942735	22944105	.	+	0	Parent=Os05t0467501-00
Chr05	irgsp1_rep	mRNA	22955315	22960812	.	-	.	ID=Os05t0467600-01;Name=Os05t0467600-01;Locus_id=Os05g0467600;Note=Conserved hypothetical protein.;Transcript_evidence=AK102546 (DDBJ%2C Best hit);ORF_evidence=A2Y5K5 (UniProt);NIAS_FLcDNA=J033096N21;TENOR=Os05t0467600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	22960725	22960812	.	-	.	Parent=Os05t0467600-01
Chr05	irgsp1_rep	CDS	22960562	22960724	.	-	0	Parent=Os05t0467600-01
Chr05	irgsp1_rep	CDS	22960396	22960487	.	-	2	Parent=Os05t0467600-01
Chr05	irgsp1_rep	three_prime_UTR	22959041	22960395	.	-	.	Parent=Os05t0467600-01
Chr05	irgsp1_rep	three_prime_UTR	22958850	22958936	.	-	.	Parent=Os05t0467600-01
Chr05	irgsp1_rep	three_prime_UTR	22958298	22958492	.	-	.	Parent=Os05t0467600-01
Chr05	irgsp1_rep	three_prime_UTR	22957581	22957786	.	-	.	Parent=Os05t0467600-01
Chr05	irgsp1_rep	three_prime_UTR	22955315	22956169	.	-	.	Parent=Os05t0467600-01
Chr05	irgsp1_rep	mRNA	22961261	22964260	.	+	.	ID=Os05t0467700-01;Name=Os05t0467700-01;Locus_id=Os05g0467700;Note=Protein of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK103561 (DDBJ%2C Best hit);ORF_evidence=A2Y5K6 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=J033132J23;Expression=AK103561;TENOR=Os05t0467700-01;KEGG=Os05t0467700-01
Chr05	irgsp1_rep	five_prime_UTR	22961261	22961406	.	+	.	Parent=Os05t0467700-01
Chr05	irgsp1_rep	CDS	22961407	22962634	.	+	0	Parent=Os05t0467700-01
Chr05	irgsp1_rep	CDS	22963227	22963318	.	+	2	Parent=Os05t0467700-01
Chr05	irgsp1_rep	three_prime_UTR	22963319	22963342	.	+	.	Parent=Os05t0467700-01
Chr05	irgsp1_rep	three_prime_UTR	22964098	22964260	.	+	.	Parent=Os05t0467700-01
Chr05	irgsp1_rep	mRNA	22961331	22964437	.	+	.	ID=Os05t0467700-02;Name=Os05t0467700-02;Locus_id=Os05g0467700;Note=Protein of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK064247 (DDBJ%2C Best hit);ORF_evidence=A2Y5K6 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=002-105-B12;Expression=AK064247;TENOR=Os05t0467700-02;KEGG=Os05t0467700-02
Chr05	irgsp1_rep	five_prime_UTR	22961331	22961406	.	+	.	Parent=Os05t0467700-02
Chr05	irgsp1_rep	CDS	22961407	22962634	.	+	0	Parent=Os05t0467700-02
Chr05	irgsp1_rep	CDS	22963227	22963318	.	+	2	Parent=Os05t0467700-02
Chr05	irgsp1_rep	three_prime_UTR	22963319	22963342	.	+	.	Parent=Os05t0467700-02
Chr05	irgsp1_rep	three_prime_UTR	22964098	22964437	.	+	.	Parent=Os05t0467700-02
Chr05	irgsp1_rep	mRNA	22970168	22971650	.	+	.	ID=Os05t0467900-00;Name=Os05t0467900-00;Locus_id=Os05g0467900;Note=Domain of unknown function DUF1618 domain containing protein.;Transcript_evidence=tplb0025o09 (Wheat FLcDNA);ORF_evidence=Q6I5S2 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);TENOR=Os05t0467900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	22970168	22970231	.	+	.	Parent=Os05t0467900-00
Chr05	irgsp1_rep	CDS	22970232	22971650	.	+	0	Parent=Os05t0467900-00
Chr05	irgsp1_rep	mRNA	22972938	22973578	.	+	.	ID=Os05t0468000-01;Name=Os05t0468000-01;Locus_id=Os05g0468000;Note=Non-protein coding transcript.;Transcript_evidence=AK071412 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023089D20;TENOR=Os05t0468000-01
Chr05	irgsp1_rep	exon	22972938	22973578	.	+	.	Parent=Os05t0468000-01
Chr05	irgsp1_rep	mRNA	22974497	22978036	.	+	.	ID=Os05t0468100-01;Name=Os05t0468100-01;Locus_id=Os05g0468100;Note=Protein of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK121589 (DDBJ%2C Best hit);ORF_evidence=B9FJK4 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=J033037O09;Expression=AK121589;TENOR=Os05t0468100-01;KEGG=Os05t0468100-01
Chr05	irgsp1_rep	five_prime_UTR	22974497	22974546	.	+	.	Parent=Os05t0468100-01
Chr05	irgsp1_rep	CDS	22974547	22975804	.	+	0	Parent=Os05t0468100-01
Chr05	irgsp1_rep	CDS	22976817	22976896	.	+	2	Parent=Os05t0468100-01
Chr05	irgsp1_rep	three_prime_UTR	22976897	22976927	.	+	.	Parent=Os05t0468100-01
Chr05	irgsp1_rep	three_prime_UTR	22977732	22978036	.	+	.	Parent=Os05t0468100-01
Chr05	irgsp1_rep	mRNA	22978604	22982154	.	+	.	ID=Os05t0468200-01;Name=Os05t0468200-01;Locus_id=Os05g0468200;Note=Domain of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK105507 (DDBJ%2C Best hit);ORF_evidence=A2Y5L0 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=001-127-E01;Expression=AK105507;TENOR=Os05t0468200-01;KEGG=Os05t0468200-01
Chr05	irgsp1_rep	five_prime_UTR	22978604	22978652	.	+	.	Parent=Os05t0468200-01
Chr05	irgsp1_rep	CDS	22978653	22979832	.	+	0	Parent=Os05t0468200-01
Chr05	irgsp1_rep	CDS	22980672	22980751	.	+	2	Parent=Os05t0468200-01
Chr05	irgsp1_rep	three_prime_UTR	22980752	22980782	.	+	.	Parent=Os05t0468200-01
Chr05	irgsp1_rep	three_prime_UTR	22981866	22982154	.	+	.	Parent=Os05t0468200-01
Chr05	irgsp1_rep	mRNA	22988230	22991467	.	+	.	ID=Os05t0468400-01;Name=Os05t0468400-01;Locus_id=Os05g0468400;Note=Domain of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK109867 (DDBJ%2C Best hit);ORF_evidence=B8AZ24 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=002-149-A05;TENOR=Os05t0468400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	22988230	22989517	.	+	0	Parent=Os05t0468400-01
Chr05	irgsp1_rep	CDS	22990698	22990762	.	+	2	Parent=Os05t0468400-01
Chr05	irgsp1_rep	three_prime_UTR	22990763	22990779	.	+	.	Parent=Os05t0468400-01
Chr05	irgsp1_rep	three_prime_UTR	22991059	22991467	.	+	.	Parent=Os05t0468400-01
Chr05	irgsp1_rep	mRNA	22992525	22994452	.	-	.	ID=Os05t0468500-01;Name=Os05t0468500-01;Locus_id=Os05g0468500;CGSNL Gene Symbol=GELP68;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 68;Oryzabase Gene Symbol Synonym(s)=OsGELP68;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 68;Note=Esterase%2C SGNH hydrolase-type domain containing protein.;Transcript_evidence=AK064681 (DDBJ%2C Best hit);ORF_evidence=NP_001150904.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087),Esterase%2C SGNH hydrolase-type (IPR013830),Esterase%2C SGNH hydrolase-type%2C subgroup (IPR013831);NIAS_FLcDNA=002-116-A05;Oryzabase=11018;Expression=AK064681;TENOR=Os05t0468500-01;KEGG=Os05t0468500-01
Chr05	irgsp1_rep	five_prime_UTR	22994413	22994452	.	-	.	Parent=Os05t0468500-01
Chr05	irgsp1_rep	CDS	22993780	22994412	.	-	0	Parent=Os05t0468500-01
Chr05	irgsp1_rep	CDS	22993179	22993434	.	-	0	Parent=Os05t0468500-01
Chr05	irgsp1_rep	CDS	22992787	22992980	.	-	2	Parent=Os05t0468500-01
Chr05	irgsp1_rep	three_prime_UTR	22992525	22992786	.	-	.	Parent=Os05t0468500-01
Chr05	irgsp1_rep	mRNA	22996896	23005544	.	-	.	ID=Os05t0468550-01;Name=Os05t0468550-01;Locus_id=Os05g0468550;Note=Hypothetical gene.;Transcript_evidence=AK287622 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065066M23;TENOR=Os05t0468550-01;KEGG=Os05t0468550-01
Chr05	irgsp1_rep	five_prime_UTR	23005162	23005544	.	-	.	Parent=Os05t0468550-01
Chr05	irgsp1_rep	five_prime_UTR	23004880	23004940	.	-	.	Parent=Os05t0468550-01
Chr05	irgsp1_rep	five_prime_UTR	23004608	23004770	.	-	.	Parent=Os05t0468550-01
Chr05	irgsp1_rep	five_prime_UTR	23004436	23004527	.	-	.	Parent=Os05t0468550-01
Chr05	irgsp1_rep	five_prime_UTR	23004278	23004352	.	-	.	Parent=Os05t0468550-01
Chr05	irgsp1_rep	five_prime_UTR	23003510	23003605	.	-	.	Parent=Os05t0468550-01
Chr05	irgsp1_rep	five_prime_UTR	23002474	23002551	.	-	.	Parent=Os05t0468550-01
Chr05	irgsp1_rep	five_prime_UTR	23001733	23001827	.	-	.	Parent=Os05t0468550-01
Chr05	irgsp1_rep	five_prime_UTR	23001538	23001629	.	-	.	Parent=Os05t0468550-01
Chr05	irgsp1_rep	five_prime_UTR	23000362	23000520	.	-	.	Parent=Os05t0468550-01
Chr05	irgsp1_rep	five_prime_UTR	22999702	22999868	.	-	.	Parent=Os05t0468550-01
Chr05	irgsp1_rep	five_prime_UTR	22999476	22999542	.	-	.	Parent=Os05t0468550-01
Chr05	irgsp1_rep	five_prime_UTR	22999216	22999388	.	-	.	Parent=Os05t0468550-01
Chr05	irgsp1_rep	five_prime_UTR	22998915	22999076	.	-	.	Parent=Os05t0468550-01
Chr05	irgsp1_rep	five_prime_UTR	22998258	22998407	.	-	.	Parent=Os05t0468550-01
Chr05	irgsp1_rep	five_prime_UTR	22997957	22998110	.	-	.	Parent=Os05t0468550-01
Chr05	irgsp1_rep	five_prime_UTR	22997142	22997712	.	-	.	Parent=Os05t0468550-01
Chr05	irgsp1_rep	CDS	22996908	22997141	.	-	0	Parent=Os05t0468550-01
Chr05	irgsp1_rep	three_prime_UTR	22996896	22996907	.	-	.	Parent=Os05t0468550-01
Chr05	irgsp1_rep	mRNA	22996865	23005525	.	+	.	ID=Os05t0468600-00;Name=Os05t0468600-00;Locus_id=Os05g0468600;Note=Similar to UGP3 (UDP-GLUCOSE PYROPHOSPHORYLASE 3).;Transcript_evidence=AK354057 (DDBJ);ORF_evidence=NP_567031.1 (RefSeq);TENOR=Os05t0468600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	22996865	22997712	.	+	0	Parent=Os05t0468600-00
Chr05	irgsp1_rep	CDS	22997957	22998110	.	+	1	Parent=Os05t0468600-00
Chr05	irgsp1_rep	CDS	22998258	22998407	.	+	0	Parent=Os05t0468600-00
Chr05	irgsp1_rep	CDS	22998915	22999076	.	+	0	Parent=Os05t0468600-00
Chr05	irgsp1_rep	CDS	22999216	22999388	.	+	0	Parent=Os05t0468600-00
Chr05	irgsp1_rep	CDS	22999476	22999542	.	+	1	Parent=Os05t0468600-00
Chr05	irgsp1_rep	CDS	22999702	22999868	.	+	0	Parent=Os05t0468600-00
Chr05	irgsp1_rep	CDS	23000362	23000520	.	+	1	Parent=Os05t0468600-00
Chr05	irgsp1_rep	CDS	23001538	23001629	.	+	1	Parent=Os05t0468600-00
Chr05	irgsp1_rep	CDS	23001733	23001827	.	+	2	Parent=Os05t0468600-00
Chr05	irgsp1_rep	CDS	23002474	23002551	.	+	0	Parent=Os05t0468600-00
Chr05	irgsp1_rep	CDS	23003510	23003605	.	+	0	Parent=Os05t0468600-00
Chr05	irgsp1_rep	CDS	23004278	23004352	.	+	0	Parent=Os05t0468600-00
Chr05	irgsp1_rep	CDS	23004436	23004527	.	+	0	Parent=Os05t0468600-00
Chr05	irgsp1_rep	CDS	23004608	23004770	.	+	1	Parent=Os05t0468600-00
Chr05	irgsp1_rep	CDS	23004880	23004940	.	+	0	Parent=Os05t0468600-00
Chr05	irgsp1_rep	CDS	23005162	23005274	.	+	2	Parent=Os05t0468600-00
Chr05	irgsp1_rep	three_prime_UTR	23005275	23005525	.	+	.	Parent=Os05t0468600-00
Chr05	irgsp1_rep	mRNA	23009282	23013425	.	+	.	ID=Os05t0468700-01;Name=Os05t0468700-01;Locus_id=Os05g0468700;CGSNL Gene Symbol=AMT2%3B1;CGSNL Gene Name=AMMONIUM TRANSPORTER 2%3B1;Oryzabase Gene Symbol Synonym(s)=OsAMT2%3B1%2C AMT2-1%2C OsAMT2.1%2C AMT2.1;Oryzabase Gene Name Synonym(s)=Ammonium transporter 2 member 1;Note=Ammonium transporter.;Transcript_evidence=AK065288 (DDBJ%2C Best hit);ORF_evidence=Q84KJ7 (UniProt);GO=Biological Process: ammonium transmembrane transport (GO:0072488),Cellular Component: membrane (GO:0016020),Molecular Function: ammonium transmembrane transporter activity (GO:0008519);InterPro=Ammonium transporter (IPR001905),Blood group Rhesus C/E/D polypeptide (IPR002229),Ammonium transporter%2C conserved site (IPR018047),Ammonium transporter AmtB-like (IPR024041);NIAS_FLcDNA=J013002M22;Oryzabase=3065;Expression=AK065288;TENOR=Os05t0468700-01;KEGG=Os05t0468700-01
Chr05	irgsp1_rep	five_prime_UTR	23009282	23009532	.	+	.	Parent=Os05t0468700-01
Chr05	irgsp1_rep	CDS	23009533	23010156	.	+	0	Parent=Os05t0468700-01
Chr05	irgsp1_rep	CDS	23011361	23011646	.	+	0	Parent=Os05t0468700-01
Chr05	irgsp1_rep	CDS	23012631	23013181	.	+	2	Parent=Os05t0468700-01
Chr05	irgsp1_rep	three_prime_UTR	23013182	23013425	.	+	.	Parent=Os05t0468700-01
Chr05	irgsp1_rep	mRNA	23009547	23013134	.	-	.	ID=Os05t0468750-00;Name=Os05t0468750-00;Locus_id=Os05g0468750;Note=Hypothetical gene.;Transcript_evidence=BT054429 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0468750-00
Chr05	irgsp1_rep	five_prime_UTR	23013134	23013134	.	-	.	Parent=Os05t0468750-00
Chr05	irgsp1_rep	CDS	23012717	23013133	.	-	0	Parent=Os05t0468750-00
Chr05	irgsp1_rep	three_prime_UTR	23012626	23012716	.	-	.	Parent=Os05t0468750-00
Chr05	irgsp1_rep	three_prime_UTR	23011360	23011721	.	-	.	Parent=Os05t0468750-00
Chr05	irgsp1_rep	three_prime_UTR	23009547	23010155	.	-	.	Parent=Os05t0468750-00
Chr05	irgsp1_rep	mRNA	23013524	23014346	.	-	.	ID=Os05t0468800-01;Name=Os05t0468800-01;Locus_id=Os05g0468800;CGSNL Gene Symbol=CRP;CGSNL Gene Name=COLD REGULATED PROTEIN;Note=Phosphatidylethanolamine-binding protein PEBP domain containing protein.;Transcript_evidence=AK241478 (DDBJ%2C Best hit);ORF_evidence=Q8H0B8 (UniProt);InterPro=YbhB/YbcL (IPR005247),Phosphatidylethanolamine-binding protein PEBP (IPR008914);NIAS_FLcDNA=J065165M02;Oryzabase=9034;TENOR=Os05t0468800-01;KEGG=Os05t0468800-01
Chr05	irgsp1_rep	five_prime_UTR	23014250	23014346	.	-	.	Parent=Os05t0468800-01
Chr05	irgsp1_rep	CDS	23013820	23014249	.	-	0	Parent=Os05t0468800-01
Chr05	irgsp1_rep	CDS	23013652	23013725	.	-	2	Parent=Os05t0468800-01
Chr05	irgsp1_rep	three_prime_UTR	23013524	23013651	.	-	.	Parent=Os05t0468800-01
Chr05	irgsp1_rep	mRNA	23020500	23021600	.	+	.	ID=Os05t0468900-01;Name=Os05t0468900-01;Locus_id=Os05g0468900;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK242879 (DDBJ%2C Best hit);ORF_evidence=NP_001174462.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J090078K01;TENOR=Os05t0468900-01;KEGG=Os05t0468900-01
Chr05	irgsp1_rep	five_prime_UTR	23020500	23020633	.	+	.	Parent=Os05t0468900-01
Chr05	irgsp1_rep	CDS	23020634	23021218	.	+	0	Parent=Os05t0468900-01
Chr05	irgsp1_rep	three_prime_UTR	23021219	23021600	.	+	.	Parent=Os05t0468900-01
Chr05	irgsp1_rep	mRNA	23050622	23053139	.	+	.	ID=Os05t0469450-01;Name=Os05t0469450-01;Locus_id=Os05g0469450;Note=Non-protein coding transcript.;Transcript_evidence=AK242615 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090017C12;TENOR=Os05t0469450-01
Chr05	irgsp1_rep	exon	23050622	23053139	.	+	.	Parent=Os05t0469450-01
Chr05	irgsp1_rep	mRNA	23058815	23061529	.	+	.	ID=Os05t0469600-01;Name=Os05t0469600-01;Locus_id=Os05g0469600;CGSNL Gene Symbol=PDC1;CGSNL Gene Name=PYRUVATE DECARBOXYLASE 1;Oryzabase Gene Symbol Synonym(s)=pdc1*%2C pdc1%2C pdc4%2C pdc 1%2C PDC 1%2C RRJ2;Oryzabase Gene Name Synonym(s)=pyruvate decarboxylase-1%2C Pyruvate decarboxylase isozyme 1%2C Pyruvate Decarboxylase 1;Note=Similar to Pyruvate decarboxylase (Fragment).;Transcript_evidence=AK100678 (DDBJ%2C Best hit),AK101272 (DDBJ%2C Best hit);ORF_evidence=Q0DHF6 (UniProt);GO=Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: carboxy-lyase activity (GO:0016831),Molecular Function: thiamine pyrophosphate binding (GO:0030976);InterPro=Thiamine pyrophosphate enzyme%2C C-terminal TPP-binding (IPR011766),Thiamine pyrophosphate enzyme%2C central domain (IPR012000),Thiamine pyrophosphate enzyme%2C N-terminal TPP-binding domain (IPR012001),Pyruvate decarboxylase/indolepyruvate decarboxylase (IPR012110);NIAS_FLcDNA=J023113E15,J033033A07;Oryzabase=2054;TENOR=Os05t0469600-01
Chr05	irgsp1_rep	five_prime_UTR	23058815	23058936	.	+	.	Parent=Os05t0469600-01
Chr05	irgsp1_rep	CDS	23058937	23059461	.	+	0	Parent=Os05t0469600-01
Chr05	irgsp1_rep	CDS	23059564	23059727	.	+	0	Parent=Os05t0469600-01
Chr05	irgsp1_rep	CDS	23059821	23060471	.	+	1	Parent=Os05t0469600-01
Chr05	irgsp1_rep	CDS	23060571	23060688	.	+	1	Parent=Os05t0469600-01
Chr05	irgsp1_rep	CDS	23060781	23060969	.	+	0	Parent=Os05t0469600-01
Chr05	irgsp1_rep	CDS	23061094	23061264	.	+	0	Parent=Os05t0469600-01
Chr05	irgsp1_rep	three_prime_UTR	23061265	23061529	.	+	.	Parent=Os05t0469600-01
Chr05	irgsp1_rep	mRNA	23058961	23061262	.	-	.	ID=Os05t0469701-00;Name=Os05t0469701-00;Locus_id=Os05g0469701;Oryzabase Gene Name Synonym(s)=Pyruvate decarboxylase;Note=Hypothetical protein.;Transcript_evidence=tplb0035b22 (Wheat FLcDNA);ORF_evidence=longestORF;Oryzabase=22527;TENOR=Os05t0469701-00
Chr05	irgsp1_rep	five_prime_UTR	23061103	23061262	.	-	.	Parent=Os05t0469701-00
Chr05	irgsp1_rep	five_prime_UTR	23060772	23060978	.	-	.	Parent=Os05t0469701-00
Chr05	irgsp1_rep	five_prime_UTR	23060569	23060681	.	-	.	Parent=Os05t0469701-00
Chr05	irgsp1_rep	five_prime_UTR	23060031	23060465	.	-	.	Parent=Os05t0469701-00
Chr05	irgsp1_rep	CDS	23059807	23060030	.	-	0	Parent=Os05t0469701-00
Chr05	irgsp1_rep	CDS	23059644	23059710	.	-	1	Parent=Os05t0469701-00
Chr05	irgsp1_rep	three_prime_UTR	23058961	23059643	.	-	.	Parent=Os05t0469701-00
Chr05	irgsp1_rep	mRNA	23065514	23068193	.	+	.	ID=Os05t0469800-00;Name=Os05t0469800-00;Locus_id=Os05g0469800;Oryzabase Gene Name Synonym(s)=Pyruvate decarboxylase;Note=Pyruvate decarboxylase (EC 4.1.1.1) (Fragment).;Transcript_evidence=CT831178 (DDBJ%2C Best hit);ORF_evidence=Q8H9F2 (UniProt);GO=Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: carboxy-lyase activity (GO:0016831),Molecular Function: thiamine pyrophosphate binding (GO:0030976);InterPro=Thiamine pyrophosphate enzyme%2C C-terminal TPP-binding (IPR011766),Thiamine pyrophosphate enzyme%2C central domain (IPR012000),Thiamine pyrophosphate enzyme%2C N-terminal TPP-binding domain (IPR012001),Pyruvate decarboxylase/indolepyruvate decarboxylase (IPR012110);Oryzabase=17652;TENOR=Os05t0469800-00;KEGG=Os05t0469800-00 (EC:4.1.1.1)
Chr05	irgsp1_rep	five_prime_UTR	23065514	23065606	.	+	.	Parent=Os05t0469800-00
Chr05	irgsp1_rep	CDS	23065607	23066131	.	+	0	Parent=Os05t0469800-00
Chr05	irgsp1_rep	CDS	23066235	23066398	.	+	0	Parent=Os05t0469800-00
Chr05	irgsp1_rep	CDS	23066485	23067135	.	+	1	Parent=Os05t0469800-00
Chr05	irgsp1_rep	CDS	23067240	23067357	.	+	1	Parent=Os05t0469800-00
Chr05	irgsp1_rep	CDS	23067454	23067642	.	+	0	Parent=Os05t0469800-00
Chr05	irgsp1_rep	CDS	23067766	23067936	.	+	0	Parent=Os05t0469800-00
Chr05	irgsp1_rep	three_prime_UTR	23067937	23068193	.	+	.	Parent=Os05t0469800-00
Chr05	irgsp1_rep	mRNA	23065631	23067934	.	-	.	ID=Os05t0469812-00;Name=Os05t0469812-00;Locus_id=Os05g0469812;Note=Hypothetical protein.;Transcript_evidence=tplb0035b22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0469812-00
Chr05	irgsp1_rep	five_prime_UTR	23067775	23067934	.	-	.	Parent=Os05t0469812-00
Chr05	irgsp1_rep	five_prime_UTR	23067448	23067651	.	-	.	Parent=Os05t0469812-00
Chr05	irgsp1_rep	five_prime_UTR	23067238	23067350	.	-	.	Parent=Os05t0469812-00
Chr05	irgsp1_rep	five_prime_UTR	23066695	23067129	.	-	.	Parent=Os05t0469812-00
Chr05	irgsp1_rep	CDS	23066495	23066694	.	-	0	Parent=Os05t0469812-00
Chr05	irgsp1_rep	CDS	23066295	23066409	.	-	1	Parent=Os05t0469812-00
Chr05	irgsp1_rep	three_prime_UTR	23065631	23066294	.	-	.	Parent=Os05t0469812-00
Chr05	irgsp1_rep	mRNA	23078664	23080522	.	+	.	ID=Os05t0469900-01;Name=Os05t0469900-01;Locus_id=Os05g0469900;Note=Conserved hypothetical protein.;Transcript_evidence=AK109700 (DDBJ%2C Best hit);ORF_evidence=Q947X7 (UniProt);NIAS_FLcDNA=002-145-F05;TENOR=Os05t0469900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	23078664	23078824	.	+	.	Parent=Os05t0469900-01
Chr05	irgsp1_rep	CDS	23078825	23079100	.	+	0	Parent=Os05t0469900-01
Chr05	irgsp1_rep	three_prime_UTR	23079101	23080522	.	+	.	Parent=Os05t0469900-01
Chr05	irgsp1_rep	mRNA	23080871	23083749	.	-	.	ID=Os05t0470000-01;Name=Os05t0470000-01;Locus_id=Os05g0470000;CGSNL Gene Symbol=XOAT2;CGSNL Gene Name=XYLAN O-ACETYLTRANSFERASE 2;Oryzabase Gene Symbol Synonym(s)=OsTBL11%2C TBL11%2C OsXOAT2;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 11%2C xylan O-acetyltransferase 2;Note=Domain of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=AK065359 (DDBJ%2C Best hit);ORF_evidence=B9FKP6 (UniProt);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=J013007F12;Oryzabase=21466;TENOR=Os05t0470000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	23083708	23083749	.	-	.	Parent=Os05t0470000-01
Chr05	irgsp1_rep	CDS	23082737	23083707	.	-	0	Parent=Os05t0470000-01
Chr05	irgsp1_rep	CDS	23082505	23082660	.	-	1	Parent=Os05t0470000-01
Chr05	irgsp1_rep	CDS	23081361	23081736	.	-	1	Parent=Os05t0470000-01
Chr05	irgsp1_rep	three_prime_UTR	23080871	23081360	.	-	.	Parent=Os05t0470000-01
Chr05	irgsp1_rep	mRNA	23093610	23095496	.	-	.	ID=Os05t0470600-01;Name=Os05t0470600-01;Locus_id=Os05g0470600;Note=Hypothetical protein.;Transcript_evidence=AK070244 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023047E12;Expression=AK070244;TENOR=Os05t0470600-01;KEGG=Os05t0470600-01
Chr05	irgsp1_rep	five_prime_UTR	23095325	23095496	.	-	.	Parent=Os05t0470600-01
Chr05	irgsp1_rep	CDS	23095112	23095324	.	-	0	Parent=Os05t0470600-01
Chr05	irgsp1_rep	three_prime_UTR	23093610	23095111	.	-	.	Parent=Os05t0470600-01
Chr05	irgsp1_rep	mRNA	23096797	23097521	.	+	.	ID=Os05t0470650-01;Name=Os05t0470650-01;Locus_id=Os05g0470650;Note=Hypothetical conserved gene.;Transcript_evidence=AK241897 (DDBJ%2C Best hit);ORF_evidence=B9FKP8 (UniProt);NIAS_FLcDNA=J075015F20;TENOR=Os05t0470650-01;KEGG=Os05t0470650-01
Chr05	irgsp1_rep	five_prime_UTR	23096797	23097000	.	+	.	Parent=Os05t0470650-01
Chr05	irgsp1_rep	CDS	23097001	23097198	.	+	0	Parent=Os05t0470650-01
Chr05	irgsp1_rep	three_prime_UTR	23097199	23097521	.	+	.	Parent=Os05t0470650-01
Chr05	irgsp1_rep	mRNA	23101746	23104091	.	+	.	ID=Os05t0470700-01;Name=Os05t0470700-01;Locus_id=Os05g0470700;CGSNL Gene Symbol=DLN146;CGSNL Gene Name=DLN REPRESSOR 146;Oryzabase Gene Symbol Synonym(s)=OsRFP%2C OsDLN146;Oryzabase Gene Name Synonym(s)=RING Finger Protein%2C DLN repressor 146%2C DLN motif protein 146;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK243689 (DDBJ%2C Best hit);ORF_evidence=NP_001147524.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J100090O10;Oryzabase=21086;TENOR=Os05t0470700-01;KEGG=Os05t0470700-01
Chr05	irgsp1_rep	five_prime_UTR	23101746	23102072	.	+	.	Parent=Os05t0470700-01
Chr05	irgsp1_rep	CDS	23102073	23103761	.	+	0	Parent=Os05t0470700-01
Chr05	irgsp1_rep	three_prime_UTR	23103762	23104091	.	+	.	Parent=Os05t0470700-01
Chr05	irgsp1_rep	mRNA	23104197	23109864	.	-	.	ID=Os05t0470800-01;Name=Os05t0470800-01;Locus_id=Os05g0470800;Note=Bacterial surface antigen (D15) family protein.;Transcript_evidence=AK069780 (DDBJ%2C Best hit);ORF_evidence=NP_568157.1 (RefSeq);GO=Cellular Component: outer membrane (GO:0019867);InterPro=Bacterial surface antigen (D15) (IPR000184),Surface antigen variable number (IPR010827);NIAS_FLcDNA=J023028F19;Expression=AK069780;TENOR=Os05t0470800-01;KEGG=Os05t0470800-01
Chr05	irgsp1_rep	five_prime_UTR	23109820	23109864	.	-	.	Parent=Os05t0470800-01
Chr05	irgsp1_rep	CDS	23109337	23109819	.	-	0	Parent=Os05t0470800-01
Chr05	irgsp1_rep	CDS	23106722	23107204	.	-	0	Parent=Os05t0470800-01
Chr05	irgsp1_rep	CDS	23106053	23106565	.	-	0	Parent=Os05t0470800-01
Chr05	irgsp1_rep	CDS	23105878	23105961	.	-	0	Parent=Os05t0470800-01
Chr05	irgsp1_rep	three_prime_UTR	23104197	23105877	.	-	.	Parent=Os05t0470800-01
Chr05	irgsp1_rep	mRNA	23111178	23112761	.	+	.	ID=Os05t0470900-00;Name=Os05t0470900-00;Locus_id=Os05g0470900;Note=Protein of unknown function DUF688 domain containing protein.;Transcript_evidence=AK332873 (DDBJ);ORF_evidence=NP_001055811.2 (RefSeq);InterPro=Protein of unknown function DUF688 (IPR007789);TENOR=Os05t0470900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	23111178	23111193	.	+	.	Parent=Os05t0470900-00
Chr05	irgsp1_rep	CDS	23111194	23111577	.	+	0	Parent=Os05t0470900-00
Chr05	irgsp1_rep	CDS	23111636	23112760	.	+	0	Parent=Os05t0470900-00
Chr05	irgsp1_rep	three_prime_UTR	23112761	23112761	.	+	.	Parent=Os05t0470900-00
Chr05	irgsp1_rep	mRNA	23112893	23117182	.	-	.	ID=Os05t0471000-01;Name=Os05t0471000-01;Locus_id=Os05g0471000;Note=Similar to Ser-thr protein kinase (Fragment).;Transcript_evidence=AK067959 (DDBJ%2C Best hit);ORF_evidence=B8AZ37 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J013124N15;Oryzabase=18226;Expression=AK067959;TENOR=Os05t0471000-01;KEGG=Os05t0471000-01
Chr05	irgsp1_rep	five_prime_UTR	23116819	23117182	.	-	.	Parent=Os05t0471000-01
Chr05	irgsp1_rep	CDS	23116728	23116818	.	-	0	Parent=Os05t0471000-01
Chr05	irgsp1_rep	CDS	23116492	23116627	.	-	2	Parent=Os05t0471000-01
Chr05	irgsp1_rep	CDS	23115839	23115910	.	-	1	Parent=Os05t0471000-01
Chr05	irgsp1_rep	CDS	23115598	23115741	.	-	1	Parent=Os05t0471000-01
Chr05	irgsp1_rep	CDS	23115423	23115518	.	-	1	Parent=Os05t0471000-01
Chr05	irgsp1_rep	CDS	23114459	23114907	.	-	1	Parent=Os05t0471000-01
Chr05	irgsp1_rep	CDS	23114089	23114279	.	-	2	Parent=Os05t0471000-01
Chr05	irgsp1_rep	CDS	23113875	23114007	.	-	0	Parent=Os05t0471000-01
Chr05	irgsp1_rep	CDS	23113214	23113776	.	-	2	Parent=Os05t0471000-01
Chr05	irgsp1_rep	three_prime_UTR	23112893	23113213	.	-	.	Parent=Os05t0471000-01
Chr05	irgsp1_rep	mRNA	23113056	23116638	.	+	.	ID=Os05t0471116-00;Name=Os05t0471116-00;Locus_id=Os05g0471116;Note=Hypothetical protein.;Transcript_evidence=tplb0032c05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0471116-00
Chr05	irgsp1_rep	five_prime_UTR	23113056	23113166	.	+	.	Parent=Os05t0471116-00
Chr05	irgsp1_rep	CDS	23113167	23113487	.	+	0	Parent=Os05t0471116-00
Chr05	irgsp1_rep	three_prime_UTR	23113488	23113762	.	+	.	Parent=Os05t0471116-00
Chr05	irgsp1_rep	three_prime_UTR	23113866	23114005	.	+	.	Parent=Os05t0471116-00
Chr05	irgsp1_rep	three_prime_UTR	23114087	23114261	.	+	.	Parent=Os05t0471116-00
Chr05	irgsp1_rep	three_prime_UTR	23114438	23114903	.	+	.	Parent=Os05t0471116-00
Chr05	irgsp1_rep	three_prime_UTR	23115470	23115801	.	+	.	Parent=Os05t0471116-00
Chr05	irgsp1_rep	three_prime_UTR	23116480	23116638	.	+	.	Parent=Os05t0471116-00
Chr05	irgsp1_rep	mRNA	23138974	23139854	.	-	.	ID=Os05t0471350-00;Name=Os05t0471350-00;Locus_id=Os05g0471350;Oryzabase Gene Symbol Synonym(s)=OsGRL11;Oryzabase Gene Name Synonym(s)=GRX-like protein 11%2C glutaredoxin-like protein 11;Note=Similar to electron transporter.;Transcript_evidence=EU972947 (DDBJ);ORF_evidence=NP_001147147.1 (RefSeq);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin (IPR002109),Thioredoxin-like fold (IPR012336);Oryzabase=13601;TENOR=Os05t0471350-00;KEGG=Os05t0471350-00
Chr05	irgsp1_rep	five_prime_UTR	23139764	23139854	.	-	.	Parent=Os05t0471350-00
Chr05	irgsp1_rep	CDS	23138990	23139763	.	-	0	Parent=Os05t0471350-00
Chr05	irgsp1_rep	three_prime_UTR	23138974	23138989	.	-	.	Parent=Os05t0471350-00
Chr05	irgsp1_rep	mRNA	23142861	23142923	.	-	.	ID=Os05t0471624-00;Name=Os05t0471624-00;Locus_id=Os05g0471624;Note=Non-protein coding transcript.;Transcript_evidence=X06283 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0471624-00
Chr05	irgsp1_rep	exon	23142861	23142923	.	-	.	Parent=Os05t0471624-00
Chr05	irgsp1_rep	mRNA	23178205	23178921	.	+	.	ID=Os05t0472000-00;Name=Os05t0472000-00;Locus_id=Os05g0472000;CGSNL Gene Symbol=G1L8;CGSNL Gene Name=G1 LIKE PROTEIN 8;Oryzabase Gene Symbol Synonym(s)=OsG1L8;Note=Similar to LSH6 (LIGHT SENSITIVE HYPOCOTYLS 6).;Transcript_evidence=AB512497 (DDBJ%2C Best hit);ORF_evidence=NP_563780.1 (RefSeq);InterPro=Domain of unknown function DUF640 (IPR006936),Integrase/recombinase%2C N-terminal (IPR023109);Oryzabase=8889;TENOR=Os05t0472000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	23178205	23178921	.	+	0	Parent=Os05t0472000-00
Chr05	irgsp1_rep	mRNA	23190642	23195137	.	-	.	ID=Os05t0472200-01;Name=Os05t0472200-01;Locus_id=Os05g0472200;Note=Similar to predicted protein.;Transcript_evidence=AK069412 (DDBJ%2C Best hit);ORF_evidence=XP_002881711.1 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Protein of unknown function DUF248%2C methyltransferase putative (IPR004159);NIAS_FLcDNA=J023018G09;Expression=AK069412;TENOR=Os05t0472200-01;KEGG=Os05t0472200-01
Chr05	irgsp1_rep	five_prime_UTR	23194835	23195137	.	-	.	Parent=Os05t0472200-01
Chr05	irgsp1_rep	CDS	23194211	23194834	.	-	0	Parent=Os05t0472200-01
Chr05	irgsp1_rep	CDS	23193654	23193803	.	-	0	Parent=Os05t0472200-01
Chr05	irgsp1_rep	CDS	23193091	23193362	.	-	0	Parent=Os05t0472200-01
Chr05	irgsp1_rep	CDS	23192849	23192958	.	-	1	Parent=Os05t0472200-01
Chr05	irgsp1_rep	CDS	23192471	23192642	.	-	2	Parent=Os05t0472200-01
Chr05	irgsp1_rep	CDS	23191998	23192240	.	-	1	Parent=Os05t0472200-01
Chr05	irgsp1_rep	CDS	23191258	23191452	.	-	1	Parent=Os05t0472200-01
Chr05	irgsp1_rep	CDS	23190983	23191172	.	-	1	Parent=Os05t0472200-01
Chr05	irgsp1_rep	three_prime_UTR	23190642	23190982	.	-	.	Parent=Os05t0472200-01
Chr05	irgsp1_rep	mRNA	23190642	23195134	.	-	.	ID=Os05t0472200-02;Name=Os05t0472200-02;Locus_id=Os05g0472200;Note=Similar to dehydration-responsive family protein.;Transcript_evidence=AK066628 (DDBJ%2C Best hit);ORF_evidence=XP_002881711.1 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Protein of unknown function DUF248%2C methyltransferase putative (IPR004159);NIAS_FLcDNA=J013068N15;TENOR=Os05t0472200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	23194835	23195134	.	-	.	Parent=Os05t0472200-02
Chr05	irgsp1_rep	CDS	23194211	23194834	.	-	0	Parent=Os05t0472200-02
Chr05	irgsp1_rep	CDS	23193938	23194069	.	-	0	Parent=Os05t0472200-02
Chr05	irgsp1_rep	three_prime_UTR	23193654	23193937	.	-	.	Parent=Os05t0472200-02
Chr05	irgsp1_rep	three_prime_UTR	23193441	23193506	.	-	.	Parent=Os05t0472200-02
Chr05	irgsp1_rep	three_prime_UTR	23193091	23193362	.	-	.	Parent=Os05t0472200-02
Chr05	irgsp1_rep	three_prime_UTR	23192849	23192958	.	-	.	Parent=Os05t0472200-02
Chr05	irgsp1_rep	three_prime_UTR	23192471	23192642	.	-	.	Parent=Os05t0472200-02
Chr05	irgsp1_rep	three_prime_UTR	23191998	23192240	.	-	.	Parent=Os05t0472200-02
Chr05	irgsp1_rep	three_prime_UTR	23191258	23191452	.	-	.	Parent=Os05t0472200-02
Chr05	irgsp1_rep	three_prime_UTR	23190642	23191172	.	-	.	Parent=Os05t0472200-02
Chr05	irgsp1_rep	mRNA	23190988	23194773	.	+	.	ID=Os05t0472250-00;Name=Os05t0472250-00;Locus_id=Os05g0472250;Note=Non-protein coding transcript.;Transcript_evidence=tplb0026p23 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os05t0472250-00
Chr05	irgsp1_rep	exon	23190988	23191165	.	+	.	Parent=Os05t0472250-00
Chr05	irgsp1_rep	exon	23191244	23191438	.	+	.	Parent=Os05t0472250-00
Chr05	irgsp1_rep	exon	23191984	23192236	.	+	.	Parent=Os05t0472250-00
Chr05	irgsp1_rep	exon	23192452	23192626	.	+	.	Parent=Os05t0472250-00
Chr05	irgsp1_rep	exon	23192830	23192957	.	+	.	Parent=Os05t0472250-00
Chr05	irgsp1_rep	exon	23193101	23193351	.	+	.	Parent=Os05t0472250-00
Chr05	irgsp1_rep	exon	23193644	23193803	.	+	.	Parent=Os05t0472250-00
Chr05	irgsp1_rep	exon	23194182	23194773	.	+	.	Parent=Os05t0472250-00
Chr05	irgsp1_rep	mRNA	23196134	23201438	.	-	.	ID=Os05t0472300-01;Name=Os05t0472300-01;Locus_id=Os05g0472300;Note=Ribonuclease P/MRP%2C subunit p29 domain containing protein.;Transcript_evidence=AK071966 (DDBJ%2C Best hit),AK103712 (DDBJ%2C Best hit);ORF_evidence=B9FKQ2 (UniProt);GO=Biological Process: rRNA processing (GO:0006364),Biological Process: mRNA cleavage (GO:0006379),Biological Process: tRNA processing (GO:0008033),Cellular Component: ribonuclease MRP complex (GO:0000172),Cellular Component: nucleolar ribonuclease P complex (GO:0005655),Cellular Component: ribonuclease P complex (GO:0030677),Molecular Function: RNA binding (GO:0003723),Molecular Function: ribonuclease activity (GO:0004540);InterPro=Ribonuclease P/MRP%2C subunit p29 (IPR002730),Ribonuclease P/MRP%2C p29 subunit (IPR016848),Rof/RNase P-like (IPR023534);NIAS_FLcDNA=J013083O20,J033137E23;TENOR=Os05t0472300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	23201273	23201438	.	-	.	Parent=Os05t0472300-01
Chr05	irgsp1_rep	CDS	23201116	23201272	.	-	0	Parent=Os05t0472300-01
Chr05	irgsp1_rep	CDS	23198656	23198868	.	-	2	Parent=Os05t0472300-01
Chr05	irgsp1_rep	CDS	23198545	23198577	.	-	2	Parent=Os05t0472300-01
Chr05	irgsp1_rep	CDS	23198393	23198466	.	-	2	Parent=Os05t0472300-01
Chr05	irgsp1_rep	CDS	23198038	23198300	.	-	0	Parent=Os05t0472300-01
Chr05	irgsp1_rep	CDS	23197766	23197834	.	-	1	Parent=Os05t0472300-01
Chr05	irgsp1_rep	CDS	23197050	23197108	.	-	1	Parent=Os05t0472300-01
Chr05	irgsp1_rep	CDS	23196851	23196955	.	-	2	Parent=Os05t0472300-01
Chr05	irgsp1_rep	CDS	23196305	23196441	.	-	2	Parent=Os05t0472300-01
Chr05	irgsp1_rep	three_prime_UTR	23196134	23196304	.	-	.	Parent=Os05t0472300-01
Chr05	irgsp1_rep	mRNA	23204531	23213279	.	+	.	ID=Os05t0472400-01;Name=Os05t0472400-01;Locus_id=Os05g0472400;RAP-DB Gene Symbol Synonym(s)=OsZIP9;RAP-DB Gene Name Synonym(s)=ZINC TRANSPORTER9;Oryzabase Gene Symbol Synonym(s)=OsZIP9%2C ZIP9;Oryzabase Gene Name Synonym(s)=zinc transporter 9%2C Zn transporter 9;Note=Influx transporter for Zn and Cd%2C Zinc/cadmium uptake;Transcript_evidence=Inferred from literature;ORF_evidence=Q0DHE3;GO=Biological Process: metal ion transport (GO:0030001),Biological Process: transmembrane transport (GO:0055085),Biological Process: zinc ion transmembrane transport (GO:0071577),Molecular Function: zinc ion transmembrane transporter activity (GO:0005385),Molecular Function: metal ion transmembrane transporter activity (GO:0046873),Cellular Component: membrane (GO:0016020),Cellular Component: integral component of membrane (GO:0016021);InterPro=Zinc/iron permease (IPR003689),Zinc/iron permease%2C fungal/plant (IPR004698);Manual Curation=April 30%2C 2020;Literature_PMID=32371522,32341004;Oryzabase=13020;TENOR=Os05t0472400-00;Subcellular location=plasma membrane (GO:0005886)
Chr05	irgsp1_rep	five_prime_UTR	23204531	23204575	.	+	.	Parent=Os05t0472400-01
Chr05	irgsp1_rep	CDS	23204576	23205208	.	+	0	Parent=Os05t0472400-01
Chr05	irgsp1_rep	CDS	23205800	23205949	.	+	0	Parent=Os05t0472400-01
Chr05	irgsp1_rep	CDS	23212468	23212773	.	+	0	Parent=Os05t0472400-01
Chr05	irgsp1_rep	three_prime_UTR	23212774	23213279	.	+	.	Parent=Os05t0472400-01
Chr05	irgsp1_rep	mRNA	23209395	23209667	.	+	.	ID=Os05t0472500-00;Name=Os05t0472500-00;Locus_id=Os05g0472500;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=B8BD47 (UniProt);TENOR=Os05t0472500-00;KEGG=Os05t0472500-00
Chr05	irgsp1_rep	CDS	23209395	23209667	.	+	0	Parent=Os05t0472500-00
Chr05	irgsp1_rep	mRNA	23216442	23218934	.	+	.	ID=Os05t0472700-01;Name=Os05t0472700-01;Locus_id=Os05g0472700;RAP-DB Gene Symbol Synonym(s)=OsZIP5;RAP-DB Gene Name Synonym(s)=ZINC TRANSPORTER5;CGSNL Gene Symbol=ZIP5;CGSNL Gene Name=ZINC TRANSPORTER 5;Oryzabase Gene Symbol Synonym(s)=OsZIP5%2C OsZIP8%2C ZIP8%2C OsZIP9;Oryzabase Gene Name Synonym(s)=zinc transporter 5%2C Zrt-Irt-like protein 5%2C Zinc-regulated transporter 5%2C zinc transporter 8%2C Zrt-Irt-like protein 8%2C zinc transporter 9%2C Zrt-Irt-like protein 9%2C Zinc-regulated transporter 9;Note=Influx transporter for Zn and Cd%2C Zinc/cadmium uptake;Transcript_evidence=AK070864;ORF_evidence=Q6L8G0;GO=Biological Process: metal ion transport (GO:0030001),Biological Process: transmembrane transport (GO:0055085),Biological Process: zinc ion transmembrane transport (GO:0071577),Molecular Function: zinc ion transmembrane transporter activity (GO:0005385),Molecular Function: metal ion transmembrane transporter activity (GO:0046873),Cellular Component: membrane (GO:0016020),Cellular Component: integral component of membrane (GO:0016021);InterPro=Zinc/iron permease (IPR003689),Zinc/iron permease%2C fungal/plant (IPR004698);NIAS_FLcDNA=J023071F17;Manual Curation=April 30%2C 2020;Literature_PMID=32341004;Oryzabase=8376;Expression=AK070864;TENOR=Os05t0472700-01;KEGG=Os05t0472700-01;Subcellular location=plasma membrane (GO:0005886)
Chr05	irgsp1_rep	five_prime_UTR	23216442	23216574	.	+	.	Parent=Os05t0472700-01
Chr05	irgsp1_rep	CDS	23216575	23217180	.	+	0	Parent=Os05t0472700-01
Chr05	irgsp1_rep	CDS	23217328	23217477	.	+	0	Parent=Os05t0472700-01
Chr05	irgsp1_rep	CDS	23218393	23218698	.	+	0	Parent=Os05t0472700-01
Chr05	irgsp1_rep	three_prime_UTR	23218699	23218934	.	+	.	Parent=Os05t0472700-01
Chr05	irgsp1_rep	mRNA	23216585	23217185	.	-	.	ID=Os05t0472850-00;Name=Os05t0472850-00;Locus_id=Os05g0472850;Note=Hypothetical protein.;Transcript_evidence=EU967967 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0472850-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	23217184	23217185	.	-	.	Parent=Os05t0472850-00
Chr05	irgsp1_rep	CDS	23216585	23217183	.	-	0	Parent=Os05t0472850-00
Chr05	irgsp1_rep	mRNA	23239204	23240669	.	-	.	ID=Os05t0473000-01;Name=Os05t0473000-01;Locus_id=Os05g0473000;CGSNL Gene Symbol=PYL/RCAR6;CGSNL Gene Name=PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 6;Oryzabase Gene Symbol Synonym(s)=OsPYL/RCAR6%2C PYL6%2C OsPYL6%2C OsPYL5%2C PYL5;Oryzabase Gene Name Synonym(s)=pyrabactin resistance-like 6%2C PYR1-like 5%2C pyrabactin resistance 1-like 5;Note=Streptomyces cyclase/dehydrase family protein.;Transcript_evidence=AK287651 (DDBJ%2C Best hit);ORF_evidence=NP_001147241.1 (RefSeq);InterPro=Polyketide cyclase/dehydrase (IPR019587),START-like domain (IPR023393);NIAS_FLcDNA=J065093C19;Oryzabase=17873;TENOR=Os05t0473000-01;KEGG=Os05t0473000-01
Chr05	irgsp1_rep	five_prime_UTR	23240616	23240669	.	-	.	Parent=Os05t0473000-01
Chr05	irgsp1_rep	CDS	23239962	23240615	.	-	0	Parent=Os05t0473000-01
Chr05	irgsp1_rep	three_prime_UTR	23239204	23239961	.	-	.	Parent=Os05t0473000-01
Chr05	irgsp1_rep	mRNA	23239643	23240672	.	+	.	ID=Os05t0473101-01;Name=Os05t0473101-01;Locus_id=Os05g0473101;Note=Hypothetical gene.;Transcript_evidence=AK243214 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100042N22;TENOR=Os05t0473101-01
Chr05	irgsp1_rep	five_prime_UTR	23239643	23240346	.	+	.	Parent=Os05t0473101-01
Chr05	irgsp1_rep	CDS	23240347	23240672	.	+	0	Parent=Os05t0473101-01
Chr05	irgsp1_rep	mRNA	23247706	23250054	.	+	.	ID=Os05t0473300-01;Name=Os05t0473300-01;Locus_id=Os05g0473300;CGSNL Gene Symbol=ERF43;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 43;Oryzabase Gene Symbol Synonym(s)=OsERF#043%2C OsERF043%2C OsERF43%2C AP2/EREBP#095%2C AP2/EREBP95;Oryzabase Gene Name Synonym(s)=ethylene response factor 43%2C APETALA2/ethylene-responsive element binding protein 95;Note=Hypothetical conserved gene.;Transcript_evidence=AK103822 (DDBJ%2C Best hit);ORF_evidence=Q65WX1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J033147H24;Oryzabase=10560;Expression=AK103822;TENOR=Os05t0473300-01;KEGG=Os05t0473300-01
Chr05	irgsp1_rep	five_prime_UTR	23247706	23247947	.	+	.	Parent=Os05t0473300-01
Chr05	irgsp1_rep	CDS	23247948	23248030	.	+	0	Parent=Os05t0473300-01
Chr05	irgsp1_rep	CDS	23249102	23249804	.	+	1	Parent=Os05t0473300-01
Chr05	irgsp1_rep	three_prime_UTR	23249805	23250054	.	+	.	Parent=Os05t0473300-01
Chr05	irgsp1_rep	mRNA	23247927	23250054	.	+	.	ID=Os05t0473300-02;Name=Os05t0473300-02;Locus_id=Os05g0473300;CGSNL Gene Symbol=ERF43;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 43;Oryzabase Gene Symbol Synonym(s)=OsERF#043%2C OsERF043%2C OsERF43%2C AP2/EREBP#095%2C AP2/EREBP95;Oryzabase Gene Name Synonym(s)=ethylene response factor 43%2C APETALA2/ethylene-responsive element binding protein 95;Note=Hypothetical conserved gene.;Transcript_evidence=AK102559 (DDBJ%2C Best hit);ORF_evidence=Q65WX1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J033097H15;Oryzabase=10560;Expression=AK102559;TENOR=Os05t0473300-02;KEGG=Os05t0473300-02
Chr05	irgsp1_rep	five_prime_UTR	23247927	23247947	.	+	.	Parent=Os05t0473300-02
Chr05	irgsp1_rep	CDS	23247948	23248030	.	+	0	Parent=Os05t0473300-02
Chr05	irgsp1_rep	CDS	23249102	23249804	.	+	1	Parent=Os05t0473300-02
Chr05	irgsp1_rep	three_prime_UTR	23249805	23250054	.	+	.	Parent=Os05t0473300-02
Chr05	irgsp1_rep	mRNA	23251135	23254403	.	+	.	ID=Os05t0473401-01;Name=Os05t0473401-01;Locus_id=Os05g0473401;CGSNL Gene Symbol=CHX5;CGSNL Gene Name=CATION/H+ EXCHANGER  5;Oryzabase Gene Symbol Synonym(s)=OsCHX05%2C CHX05%2C OsCHX5;Oryzabase Gene Name Synonym(s)=cation/H+ exchanger  5;Note=Hypothetical conserved gene.;Transcript_evidence=AK100933 (DDBJ%2C Best hit);ORF_evidence=NP_001174464.1 (RefSeq);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: solute:hydrogen antiporter activity (GO:0015299);InterPro=Cation/H+ exchanger (IPR006153);NIAS_FLcDNA=J023136C05;Oryzabase=22365;TENOR=Os05t0473401-01;KEGG=Os05t0473401-01
Chr05	irgsp1_rep	five_prime_UTR	23251135	23251310	.	+	.	Parent=Os05t0473401-01
Chr05	irgsp1_rep	CDS	23251311	23251501	.	+	0	Parent=Os05t0473401-01
Chr05	irgsp1_rep	CDS	23251751	23252744	.	+	1	Parent=Os05t0473401-01
Chr05	irgsp1_rep	CDS	23252840	23254159	.	+	0	Parent=Os05t0473401-01
Chr05	irgsp1_rep	three_prime_UTR	23254160	23254403	.	+	.	Parent=Os05t0473401-01
Chr05	irgsp1_rep	mRNA	23251212	23254382	.	+	.	ID=Os05t0473401-02;Name=Os05t0473401-02;Locus_id=Os05g0473401;CGSNL Gene Symbol=CHX5;CGSNL Gene Name=CATION/H+ EXCHANGER  5;Oryzabase Gene Symbol Synonym(s)=OsCHX05%2C CHX05%2C OsCHX5;Oryzabase Gene Name Synonym(s)=cation/H+ exchanger  5;Note=Hypothetical conserved gene.;Transcript_evidence=AK072263 (DDBJ%2C Best hit);ORF_evidence=NP_001174464.1 (RefSeq);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: solute:hydrogen antiporter activity (GO:0015299);InterPro=Cation/H+ exchanger (IPR006153);NIAS_FLcDNA=J023004E05;Oryzabase=22365;TENOR=Os05t0473401-02;KEGG=Os05t0473401-02
Chr05	irgsp1_rep	five_prime_UTR	23251212	23251310	.	+	.	Parent=Os05t0473401-02
Chr05	irgsp1_rep	CDS	23251311	23251501	.	+	0	Parent=Os05t0473401-02
Chr05	irgsp1_rep	CDS	23251751	23252744	.	+	1	Parent=Os05t0473401-02
Chr05	irgsp1_rep	CDS	23252840	23254159	.	+	0	Parent=Os05t0473401-02
Chr05	irgsp1_rep	three_prime_UTR	23254160	23254382	.	+	.	Parent=Os05t0473401-02
Chr05	irgsp1_rep	mRNA	23254949	23257541	.	-	.	ID=Os05t0473500-01;Name=Os05t0473500-01;Locus_id=Os05g0473500;CGSNL Gene Symbol=EXO70B3;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN B3;Oryzabase Gene Symbol Synonym(s)=OsEXO70B3%2C OsExo70B3%2C OrysaB3_Exo70;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein B3;Note=Exo70 exocyst complex subunit family protein.;Transcript_evidence=AK101630 (DDBJ%2C Best hit);ORF_evidence=B6U0J9 (UniProt);GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exo70 exocyst complex subunit (IPR004140),Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=J033054N12;Oryzabase=20326;Expression=AK101630;TENOR=Os05t0473500-01;KEGG=Os05t0473500-01
Chr05	irgsp1_rep	five_prime_UTR	23257367	23257541	.	-	.	Parent=Os05t0473500-01
Chr05	irgsp1_rep	CDS	23257354	23257366	.	-	0	Parent=Os05t0473500-01
Chr05	irgsp1_rep	CDS	23255298	23257072	.	-	2	Parent=Os05t0473500-01
Chr05	irgsp1_rep	three_prime_UTR	23254949	23255297	.	-	.	Parent=Os05t0473500-01
Chr05	irgsp1_rep	mRNA	23255003	23256304	.	-	.	ID=Os05t0473500-02;Name=Os05t0473500-02;Locus_id=Os05g0473500;CGSNL Gene Symbol=EXO70B3;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN B3;Oryzabase Gene Symbol Synonym(s)=OsEXO70B3%2C OsExo70B3%2C OrysaB3_Exo70;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein B3;Note=Similar to protein binding protein.;Transcript_evidence=AK059362 (DDBJ%2C Best hit);ORF_evidence=B6U0J9 (UniProt);GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exo70 exocyst complex subunit (IPR004140),Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=001-026-E02;Oryzabase=20326;Expression=AK059362;TENOR=Os05t0473500-02;KEGG=Os05t0473500-02
Chr05	irgsp1_rep	five_prime_UTR	23256303	23256304	.	-	.	Parent=Os05t0473500-02
Chr05	irgsp1_rep	CDS	23255298	23256302	.	-	0	Parent=Os05t0473500-02
Chr05	irgsp1_rep	three_prime_UTR	23255003	23255297	.	-	.	Parent=Os05t0473500-02
Chr05	irgsp1_rep	mRNA	23273472	23280905	.	-	.	ID=Os05t0473900-01;Name=Os05t0473900-01;Locus_id=Os05g0473900;Oryzabase Gene Symbol Synonym(s)=OMT8;Oryzabase Gene Name Synonym(s)=Oryza miR164-targeted gene 8;Note=Phytanoyl-CoA dioxygenase family protein.;Transcript_evidence=AK064856 (DDBJ%2C Best hit);ORF_evidence=NP_565262.1 (RefSeq);InterPro=Phytanoyl-CoA dioxygenase (IPR008775);NIAS_FLcDNA=J013000H11;Oryzabase=15822;Expression=AK064856;TENOR=Os05t0473900-01;KEGG=Os05t0473900-01
Chr05	irgsp1_rep	five_prime_UTR	23280618	23280905	.	-	.	Parent=Os05t0473900-01
Chr05	irgsp1_rep	five_prime_UTR	23280072	23280125	.	-	.	Parent=Os05t0473900-01
Chr05	irgsp1_rep	five_prime_UTR	23279184	23279242	.	-	.	Parent=Os05t0473900-01
Chr05	irgsp1_rep	five_prime_UTR	23278306	23278406	.	-	.	Parent=Os05t0473900-01
Chr05	irgsp1_rep	five_prime_UTR	23276521	23276625	.	-	.	Parent=Os05t0473900-01
Chr05	irgsp1_rep	CDS	23276466	23276520	.	-	0	Parent=Os05t0473900-01
Chr05	irgsp1_rep	CDS	23276192	23276310	.	-	2	Parent=Os05t0473900-01
Chr05	irgsp1_rep	CDS	23275958	23276018	.	-	0	Parent=Os05t0473900-01
Chr05	irgsp1_rep	CDS	23275635	23275703	.	-	2	Parent=Os05t0473900-01
Chr05	irgsp1_rep	CDS	23274912	23275030	.	-	2	Parent=Os05t0473900-01
Chr05	irgsp1_rep	CDS	23274683	23274830	.	-	0	Parent=Os05t0473900-01
Chr05	irgsp1_rep	CDS	23274445	23274589	.	-	2	Parent=Os05t0473900-01
Chr05	irgsp1_rep	CDS	23274276	23274362	.	-	1	Parent=Os05t0473900-01
Chr05	irgsp1_rep	CDS	23273606	23273648	.	-	1	Parent=Os05t0473900-01
Chr05	irgsp1_rep	three_prime_UTR	23273472	23273605	.	-	.	Parent=Os05t0473900-01
Chr05	irgsp1_rep	mRNA	23284633	23285729	.	+	.	ID=Os05t0474400-01;Name=Os05t0474400-01;Locus_id=Os05g0474400;Oryzabase Gene Symbol Synonym(s)=OsPRA1;Oryzabase Gene Name Synonym(s)=Prenylated rab acceptor;Note=Prenylated rab acceptor PRA1 family protein.;Transcript_evidence=AK060006 (DDBJ%2C Best hit),AK104118 (DDBJ%2C Best hit),AK106175 (DDBJ%2C Best hit);ORF_evidence=Q5S1T9 (UniProt);InterPro=Prenylated rab acceptor PRA1 (IPR004895);NIAS_FLcDNA=006-302-B06,006-203-A05,001-208-C07;Oryzabase=15136;Expression=AK060006;TENOR=Os05t0474400-01;KEGG=Os05t0474400-01
Chr05	irgsp1_rep	five_prime_UTR	23284633	23284732	.	+	.	Parent=Os05t0474400-01
Chr05	irgsp1_rep	CDS	23284733	23285395	.	+	0	Parent=Os05t0474400-01
Chr05	irgsp1_rep	three_prime_UTR	23285396	23285729	.	+	.	Parent=Os05t0474400-01
Chr05	irgsp1_rep	mRNA	23285430	23285626	.	+	.	ID=Os05t0474400-03;Name=Os05t0474400-03;Locus_id=Os05g0474400;Oryzabase Gene Symbol Synonym(s)=OsPRA1;Oryzabase Gene Name Synonym(s)=Prenylated rab acceptor;Note=Non-protein coding transcript.;Transcript_evidence=AK060555 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-022-D04;Oryzabase=15136;TENOR=Os05t0474400-03
Chr05	irgsp1_rep	exon	23285430	23285626	.	+	.	Parent=Os05t0474400-03
Chr05	irgsp1_rep	mRNA	23287870	23291871	.	+	.	ID=Os05t0474500-01;Name=Os05t0474500-01;Locus_id=Os05g0474500;Note=Phox-like domain containing protein.;Transcript_evidence=AK243128 (DDBJ%2C Best hit);ORF_evidence=B4FAI4 (UniProt);GO=Biological Process: cell communication (GO:0007154),Molecular Function: protein binding (GO:0005515),Molecular Function: phosphatidylinositol binding (GO:0035091);InterPro=Phox homologous domain (IPR001683),Vps5 C-terminal (IPR015404);NIAS_FLcDNA=J100029K07;TENOR=Os05t0474500-01;KEGG=Os05t0474500-01
Chr05	irgsp1_rep	five_prime_UTR	23287870	23287972	.	+	.	Parent=Os05t0474500-01
Chr05	irgsp1_rep	CDS	23287973	23288860	.	+	0	Parent=Os05t0474500-01
Chr05	irgsp1_rep	CDS	23289803	23290012	.	+	0	Parent=Os05t0474500-01
Chr05	irgsp1_rep	CDS	23290122	23290388	.	+	0	Parent=Os05t0474500-01
Chr05	irgsp1_rep	CDS	23291436	23291522	.	+	0	Parent=Os05t0474500-01
Chr05	irgsp1_rep	CDS	23291641	23291721	.	+	0	Parent=Os05t0474500-01
Chr05	irgsp1_rep	three_prime_UTR	23291722	23291871	.	+	.	Parent=Os05t0474500-01
Chr05	irgsp1_rep	mRNA	23292351	23300467	.	+	.	ID=Os05t0474600-01;Name=Os05t0474600-01;Locus_id=Os05g0474600;Note=Similar to Aldose reductase-related protein (EC 1.1.1.21).;Transcript_evidence=AK066733 (DDBJ%2C Best hit);ORF_evidence=Q43320 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldo/keto reductase (IPR001395),Aldo/keto reductase%2C conserved site (IPR018170),Aldo/keto reductase subgroup (IPR020471),NADP-dependent oxidoreductase domain (IPR023210);NIAS_FLcDNA=J013074I15;Expression=AK066733;TENOR=Os05t0474600-01;KEGG=Os05t0474600-01 (EC:1.1.1.21)
Chr05	irgsp1_rep	five_prime_UTR	23292351	23292914	.	+	.	Parent=Os05t0474600-01
Chr05	irgsp1_rep	five_prime_UTR	23293209	23293338	.	+	.	Parent=Os05t0474600-01
Chr05	irgsp1_rep	five_prime_UTR	23293716	23294246	.	+	.	Parent=Os05t0474600-01
Chr05	irgsp1_rep	five_prime_UTR	23294782	23294889	.	+	.	Parent=Os05t0474600-01
Chr05	irgsp1_rep	five_prime_UTR	23295057	23295602	.	+	.	Parent=Os05t0474600-01
Chr05	irgsp1_rep	five_prime_UTR	23296103	23296225	.	+	.	Parent=Os05t0474600-01
Chr05	irgsp1_rep	five_prime_UTR	23296640	23297225	.	+	.	Parent=Os05t0474600-01
Chr05	irgsp1_rep	five_prime_UTR	23297376	23297534	.	+	.	Parent=Os05t0474600-01
Chr05	irgsp1_rep	CDS	23297535	23297672	.	+	0	Parent=Os05t0474600-01
Chr05	irgsp1_rep	CDS	23298188	23298238	.	+	0	Parent=Os05t0474600-01
Chr05	irgsp1_rep	CDS	23298313	23298386	.	+	0	Parent=Os05t0474600-01
Chr05	irgsp1_rep	CDS	23298502	23298589	.	+	1	Parent=Os05t0474600-01
Chr05	irgsp1_rep	CDS	23298687	23298893	.	+	0	Parent=Os05t0474600-01
Chr05	irgsp1_rep	CDS	23298970	23299041	.	+	0	Parent=Os05t0474600-01
Chr05	irgsp1_rep	CDS	23299180	23299239	.	+	0	Parent=Os05t0474600-01
Chr05	irgsp1_rep	CDS	23299340	23299516	.	+	0	Parent=Os05t0474600-01
Chr05	irgsp1_rep	CDS	23300121	23300210	.	+	0	Parent=Os05t0474600-01
Chr05	irgsp1_rep	three_prime_UTR	23300211	23300467	.	+	.	Parent=Os05t0474600-01
Chr05	irgsp1_rep	mRNA	23293934	23297160	.	+	.	ID=Os05t0474600-02;Name=Os05t0474600-02;Locus_id=Os05g0474600;Note=Similar to predicted protein.;Transcript_evidence=AK059249 (DDBJ%2C Best hit);ORF_evidence=Q65WW4 (UniProt);InterPro=Protein of unknown function DUF3411 (IPR021825);NIAS_FLcDNA=001-024-G10;Expression=AK059249;TENOR=Os05t0474600-02;KEGG=Os05t0474600-02
Chr05	irgsp1_rep	five_prime_UTR	23293934	23293934	.	+	.	Parent=Os05t0474600-02
Chr05	irgsp1_rep	CDS	23293935	23294246	.	+	0	Parent=Os05t0474600-02
Chr05	irgsp1_rep	CDS	23294782	23294889	.	+	0	Parent=Os05t0474600-02
Chr05	irgsp1_rep	CDS	23295057	23295602	.	+	0	Parent=Os05t0474600-02
Chr05	irgsp1_rep	CDS	23296103	23296225	.	+	0	Parent=Os05t0474600-02
Chr05	irgsp1_rep	CDS	23296640	23296855	.	+	0	Parent=Os05t0474600-02
Chr05	irgsp1_rep	three_prime_UTR	23296856	23297160	.	+	.	Parent=Os05t0474600-02
Chr05	irgsp1_rep	mRNA	23297459	23300457	.	+	.	ID=Os05t0474600-03;Name=Os05t0474600-03;Locus_id=Os05g0474600;Note=Similar to Aldose reductase-related protein (EC 1.1.1.21).;Transcript_evidence=AK102864 (DDBJ%2C Best hit);ORF_evidence=Q43320 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldo/keto reductase (IPR001395),Aldo/keto reductase%2C conserved site (IPR018170),Aldo/keto reductase subgroup (IPR020471),NADP-dependent oxidoreductase domain (IPR023210);NIAS_FLcDNA=J033111K17;Expression=AK102864;TENOR=Os05t0474600-03;KEGG=Os05t0474600-03 (EC:1.1.1.21)
Chr05	irgsp1_rep	five_prime_UTR	23297459	23297534	.	+	.	Parent=Os05t0474600-03
Chr05	irgsp1_rep	CDS	23297535	23297672	.	+	0	Parent=Os05t0474600-03
Chr05	irgsp1_rep	CDS	23298188	23298238	.	+	0	Parent=Os05t0474600-03
Chr05	irgsp1_rep	CDS	23298313	23298386	.	+	0	Parent=Os05t0474600-03
Chr05	irgsp1_rep	CDS	23298502	23298589	.	+	1	Parent=Os05t0474600-03
Chr05	irgsp1_rep	CDS	23298687	23298893	.	+	0	Parent=Os05t0474600-03
Chr05	irgsp1_rep	CDS	23298970	23299041	.	+	0	Parent=Os05t0474600-03
Chr05	irgsp1_rep	CDS	23299180	23299239	.	+	0	Parent=Os05t0474600-03
Chr05	irgsp1_rep	CDS	23299340	23299516	.	+	0	Parent=Os05t0474600-03
Chr05	irgsp1_rep	CDS	23300121	23300210	.	+	0	Parent=Os05t0474600-03
Chr05	irgsp1_rep	three_prime_UTR	23300211	23300457	.	+	.	Parent=Os05t0474600-03
Chr05	irgsp1_rep	mRNA	23307447	23308190	.	+	.	ID=Os05t0474700-01;Name=Os05t0474700-01;Locus_id=Os05g0474700;Note=Conserved hypothetical protein.;Transcript_evidence=AK109305 (DDBJ%2C Best hit);ORF_evidence=B8AZ95 (UniProt);NIAS_FLcDNA=002-188-E04;Expression=AK109305;TENOR=Os05t0474700-01;KEGG=Os05t0474700-01
Chr05	irgsp1_rep	five_prime_UTR	23307447	23307555	.	+	.	Parent=Os05t0474700-01
Chr05	irgsp1_rep	CDS	23307556	23308071	.	+	0	Parent=Os05t0474700-01
Chr05	irgsp1_rep	three_prime_UTR	23308072	23308190	.	+	.	Parent=Os05t0474700-01
Chr05	irgsp1_rep	mRNA	23310508	23313449	.	-	.	ID=Os05t0474800-01;Name=Os05t0474800-01;Locus_id=Os05g0474800;RAP-DB Gene Symbol Synonym(s)=OsWRKY70;RAP-DB Gene Name Synonym(s)=WRKY GENE 70;CGSNL Gene Symbol=WRKY70;CGSNL Gene Name=WRKY GENE 70;Oryzabase Gene Symbol Synonym(s)=OsWRKY70;Oryzabase Gene Name Synonym(s)=Rice WRKY gene70;Note=WRKY transcription factor%2C Herbivore resistance%2C Defense regulation by the volatile indole;Transcript_evidence=AK119867;ORF_evidence=Q65WW1;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA-binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=WRKY domain superfamily (IPR036576),WRKY domain (IPR003657);NIAS_FLcDNA=002-179-A11;Manual Curation=April 17%2C 2019;Literature_PMID=30760558,Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6586;Expression=AK119867;TENOR=Os05t0474800-01;KEGG=Os05t0474800-01
Chr05	irgsp1_rep	five_prime_UTR	23313344	23313449	.	-	.	Parent=Os05t0474800-01
Chr05	irgsp1_rep	CDS	23313119	23313343	.	-	0	Parent=Os05t0474800-01
Chr05	irgsp1_rep	CDS	23312779	23313015	.	-	0	Parent=Os05t0474800-01
Chr05	irgsp1_rep	CDS	23311502	23312274	.	-	0	Parent=Os05t0474800-01
Chr05	irgsp1_rep	CDS	23310922	23311405	.	-	1	Parent=Os05t0474800-01
Chr05	irgsp1_rep	three_prime_UTR	23310508	23310921	.	-	.	Parent=Os05t0474800-01
Chr05	irgsp1_rep	mRNA	23317206	23319965	.	-	.	ID=Os05t0474900-01;Name=Os05t0474900-01;Locus_id=Os05g0474900;Note=Protein of unknown function Cys-rich family protein.;Transcript_evidence=AK102680 (DDBJ%2C Best hit);ORF_evidence=E4MX12 (UniProt);InterPro=Uncharacterised protein family Cys-rich (IPR006461),Protein of unknown function DUF2985 (IPR021369);NIAS_FLcDNA=J033102J02;Expression=AK102680;TENOR=Os05t0474900-01;KEGG=Os05t0474900-01
Chr05	irgsp1_rep	five_prime_UTR	23319790	23319965	.	-	.	Parent=Os05t0474900-01
Chr05	irgsp1_rep	five_prime_UTR	23319098	23319239	.	-	.	Parent=Os05t0474900-01
Chr05	irgsp1_rep	CDS	23317433	23319097	.	-	0	Parent=Os05t0474900-01
Chr05	irgsp1_rep	three_prime_UTR	23317206	23317432	.	-	.	Parent=Os05t0474900-01
Chr05	irgsp1_rep	mRNA	23351926	23356155	.	+	.	ID=Os05t0475300-01;Name=Os05t0475300-01;Locus_id=Os05g0475300;Note=VHS domain containing protein.;Transcript_evidence=AK065069 (DDBJ%2C Best hit);ORF_evidence=NP_001151587.1 (RefSeq);GO=Biological Process: intracellular protein transport (GO:0006886),Cellular Component: intracellular (GO:0005622);InterPro=VHS (IPR002014),GAT (IPR004152),ENTH/VHS (IPR008942),VHS subgroup (IPR018205);NIAS_FLcDNA=J013001K05;Expression=AK065069;TENOR=Os05t0475300-01;KEGG=Os05t0475300-01
Chr05	irgsp1_rep	five_prime_UTR	23351926	23352004	.	+	.	Parent=Os05t0475300-01
Chr05	irgsp1_rep	CDS	23352005	23352144	.	+	0	Parent=Os05t0475300-01
Chr05	irgsp1_rep	CDS	23353004	23353082	.	+	1	Parent=Os05t0475300-01
Chr05	irgsp1_rep	CDS	23353267	23353365	.	+	0	Parent=Os05t0475300-01
Chr05	irgsp1_rep	CDS	23353707	23353820	.	+	0	Parent=Os05t0475300-01
Chr05	irgsp1_rep	CDS	23353908	23354056	.	+	0	Parent=Os05t0475300-01
Chr05	irgsp1_rep	CDS	23354156	23354237	.	+	1	Parent=Os05t0475300-01
Chr05	irgsp1_rep	CDS	23354316	23354401	.	+	0	Parent=Os05t0475300-01
Chr05	irgsp1_rep	CDS	23354666	23354896	.	+	1	Parent=Os05t0475300-01
Chr05	irgsp1_rep	CDS	23354976	23355873	.	+	1	Parent=Os05t0475300-01
Chr05	irgsp1_rep	three_prime_UTR	23355874	23356155	.	+	.	Parent=Os05t0475300-01
Chr05	irgsp1_rep	mRNA	23356169	23358450	.	-	.	ID=Os05t0475400-01;Name=Os05t0475400-01;Locus_id=Os05g0475400;RAP-DB Gene Symbol Synonym(s)=Osh36;RAP-DB Gene Name Synonym(s)=alanine:glyoxylate aminotransferase-like protein;Oryzabase Gene Symbol Synonym(s)=Osh36%2C OsH36%2C H36%2C OsAMTR1%2C AMTR1;Oryzabase Gene Name Synonym(s)=alanine:glyoxylate aminotransferase-like protein%2C aminotransferase 1;Note=Similar to Alanine:glyoxylate aminotransferase-like protein (Fragment).;Transcript_evidence=AK060423 (DDBJ%2C Best hit);ORF_evidence=Q65WV6;GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: transaminase activity (GO:0008483),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferase class-III (IPR005814),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=001-010-H01;Manual Curation=November 25%2C 2016;Oryzabase=13865;Expression=AK060423;TENOR=Os05t0475400-01;KEGG=Os05t0475400-01
Chr05	irgsp1_rep	five_prime_UTR	23358449	23358450	.	-	.	Parent=Os05t0475400-01
Chr05	irgsp1_rep	CDS	23358239	23358448	.	-	0	Parent=Os05t0475400-01
Chr05	irgsp1_rep	CDS	23357955	23358125	.	-	0	Parent=Os05t0475400-01
Chr05	irgsp1_rep	CDS	23357657	23357800	.	-	0	Parent=Os05t0475400-01
Chr05	irgsp1_rep	CDS	23357368	23357547	.	-	0	Parent=Os05t0475400-01
Chr05	irgsp1_rep	CDS	23357032	23357257	.	-	0	Parent=Os05t0475400-01
Chr05	irgsp1_rep	CDS	23356812	23356925	.	-	2	Parent=Os05t0475400-01
Chr05	irgsp1_rep	CDS	23356639	23356725	.	-	2	Parent=Os05t0475400-01
Chr05	irgsp1_rep	CDS	23356488	23356531	.	-	2	Parent=Os05t0475400-01
Chr05	irgsp1_rep	three_prime_UTR	23356169	23356487	.	-	.	Parent=Os05t0475400-01
Chr05	irgsp1_rep	mRNA	23356333	23360022	.	-	.	ID=Os05t0475400-02;Name=Os05t0475400-02;Locus_id=Os05g0475400;RAP-DB Gene Symbol Synonym(s)=Osh36%2C OsAMTR1%2C AMTR1;RAP-DB Gene Name Synonym(s)=alanine:glyoxylate aminotransferase-like protein%2C aminotransferase 1;Oryzabase Gene Symbol Synonym(s)=Osh36%2C OsH36%2C H36%2C OsAMTR1%2C AMTR1;Oryzabase Gene Name Synonym(s)=alanine:glyoxylate aminotransferase-like protein%2C aminotransferase 1;Note=Aminotransferase%2C Regulation of abiotic stress responses;Transcript_evidence=Inferred from literature (indica);ORF_evidence=Q65WV6;GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: transaminase activity (GO:0008483),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferase class-III (IPR005814),Pyridoxal phosphate-dependent transferase (IPR015424),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422);Manual Curation=November 25%2C 2016;Literature_PMID=27486471;Oryzabase=13865
Chr05	irgsp1_rep	five_prime_UTR	23359935	23360022	.	-	.	Parent=Os05t0475400-02
Chr05	irgsp1_rep	five_prime_UTR	23359747	23359836	.	-	.	Parent=Os05t0475400-02
Chr05	irgsp1_rep	five_prime_UTR	23358449	23358469	.	-	.	Parent=Os05t0475400-02
Chr05	irgsp1_rep	CDS	23358239	23358448	.	-	0	Parent=Os05t0475400-02
Chr05	irgsp1_rep	CDS	23357955	23358125	.	-	0	Parent=Os05t0475400-02
Chr05	irgsp1_rep	CDS	23357657	23357800	.	-	0	Parent=Os05t0475400-02
Chr05	irgsp1_rep	CDS	23357368	23357547	.	-	0	Parent=Os05t0475400-02
Chr05	irgsp1_rep	CDS	23357032	23357257	.	-	0	Parent=Os05t0475400-02
Chr05	irgsp1_rep	CDS	23356812	23356925	.	-	2	Parent=Os05t0475400-02
Chr05	irgsp1_rep	CDS	23356639	23356725	.	-	2	Parent=Os05t0475400-02
Chr05	irgsp1_rep	CDS	23356488	23356531	.	-	2	Parent=Os05t0475400-02
Chr05	irgsp1_rep	three_prime_UTR	23356333	23356487	.	-	.	Parent=Os05t0475400-02
Chr05	irgsp1_rep	mRNA	23356391	23359903	.	+	.	ID=Os05t0475475-00;Name=Os05t0475475-00;Locus_id=Os05g0475475;Note=Hypothetical gene.;Transcript_evidence=BT083955 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0475475-00;KEGG=Os05t0475475-00
Chr05	irgsp1_rep	five_prime_UTR	23356391	23356531	.	+	.	Parent=Os05t0475475-00
Chr05	irgsp1_rep	five_prime_UTR	23356639	23356723	.	+	.	Parent=Os05t0475475-00
Chr05	irgsp1_rep	five_prime_UTR	23356809	23356925	.	+	.	Parent=Os05t0475475-00
Chr05	irgsp1_rep	five_prime_UTR	23357032	23357238	.	+	.	Parent=Os05t0475475-00
Chr05	irgsp1_rep	five_prime_UTR	23357352	23357546	.	+	.	Parent=Os05t0475475-00
Chr05	irgsp1_rep	five_prime_UTR	23357656	23357788	.	+	.	Parent=Os05t0475475-00
Chr05	irgsp1_rep	five_prime_UTR	23357942	23358047	.	+	.	Parent=Os05t0475475-00
Chr05	irgsp1_rep	CDS	23358048	23358111	.	+	0	Parent=Os05t0475475-00
Chr05	irgsp1_rep	CDS	23358225	23358476	.	+	2	Parent=Os05t0475475-00
Chr05	irgsp1_rep	CDS	23359749	23359759	.	+	2	Parent=Os05t0475475-00
Chr05	irgsp1_rep	three_prime_UTR	23359760	23359903	.	+	.	Parent=Os05t0475475-00
Chr05	irgsp1_rep	mRNA	23374087	23377731	.	+	.	ID=Os05t0475550-00;Name=Os05t0475550-00;Locus_id=Os05g0475550;Note=Non-protein coding transcript.;Transcript_evidence=CT836456 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os05t0475550-00
Chr05	irgsp1_rep	exon	23374087	23374431	.	+	.	Parent=Os05t0475550-00
Chr05	irgsp1_rep	exon	23377466	23377731	.	+	.	Parent=Os05t0475550-00
Chr05	irgsp1_rep	mRNA	23374299	23375716	.	-	.	ID=Os05t0475600-00;Name=Os05t0475600-00;Locus_id=Os05g0475600;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001174465.1 (RefSeq);TENOR=Os05t0475600-00;KEGG=Os05t0475600-00
Chr05	irgsp1_rep	CDS	23375641	23375716	.	-	0	Parent=Os05t0475600-00
Chr05	irgsp1_rep	CDS	23375233	23375364	.	-	2	Parent=Os05t0475600-00
Chr05	irgsp1_rep	CDS	23374954	23375153	.	-	2	Parent=Os05t0475600-00
Chr05	irgsp1_rep	CDS	23374299	23374544	.	-	0	Parent=Os05t0475600-00
Chr05	irgsp1_rep	mRNA	23375514	23376040	.	+	.	ID=Os05t0475625-00;Name=Os05t0475625-00;Locus_id=Os05g0475625;Note=Hypothetical gene.;Transcript_evidence=EU950895 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0475625-00;KEGG=Os05t0475625-00
Chr05	irgsp1_rep	five_prime_UTR	23375514	23375542	.	+	.	Parent=Os05t0475625-00
Chr05	irgsp1_rep	CDS	23375543	23375797	.	+	0	Parent=Os05t0475625-00
Chr05	irgsp1_rep	three_prime_UTR	23375798	23375824	.	+	.	Parent=Os05t0475625-00
Chr05	irgsp1_rep	three_prime_UTR	23375936	23376040	.	+	.	Parent=Os05t0475625-00
Chr05	irgsp1_rep	mRNA	23386856	23388931	.	+	.	ID=Os05t0475700-01;Name=Os05t0475700-01;Locus_id=Os05g0475700;CGSNL Gene Symbol=MFS3;CGSNL Gene Name=MAJOR FACILITATOR SUPERFAMILY 3;Oryzabase Gene Symbol Synonym(s)=OsMFS3;Oryzabase Gene Name Synonym(s)=major facilitator superfamily 3;Note=Nodulin-like domain containing protein.;Transcript_evidence=AK066119 (DDBJ%2C Best hit);ORF_evidence=NP_001148064.1 (RefSeq);InterPro=Nodulin-like (IPR010658),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J013058N11;Oryzabase=21386;Expression=AK066119;TENOR=Os05t0475700-01;KEGG=Os05t0475700-01
Chr05	irgsp1_rep	five_prime_UTR	23386856	23386896	.	+	.	Parent=Os05t0475700-01
Chr05	irgsp1_rep	CDS	23386897	23388056	.	+	0	Parent=Os05t0475700-01
Chr05	irgsp1_rep	CDS	23388204	23388729	.	+	1	Parent=Os05t0475700-01
Chr05	irgsp1_rep	three_prime_UTR	23388730	23388931	.	+	.	Parent=Os05t0475700-01
Chr05	irgsp1_rep	mRNA	23386858	23388968	.	+	.	ID=Os05t0475700-02;Name=Os05t0475700-02;Locus_id=Os05g0475700;CGSNL Gene Symbol=MFS3;CGSNL Gene Name=MAJOR FACILITATOR SUPERFAMILY 3;Oryzabase Gene Symbol Synonym(s)=OsMFS3;Oryzabase Gene Name Synonym(s)=major facilitator superfamily 3;Note=Similar to nodulin-like protein.;Transcript_evidence=AK105733 (DDBJ%2C Best hit);ORF_evidence=NP_001148064.1 (RefSeq);InterPro=Nodulin-like (IPR010658),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=001-201-H09;Oryzabase=21386;Expression=AK105733;TENOR=Os05t0475700-02;KEGG=Os05t0475700-02
Chr05	irgsp1_rep	five_prime_UTR	23386858	23386896	.	+	.	Parent=Os05t0475700-02
Chr05	irgsp1_rep	CDS	23386897	23388060	.	+	0	Parent=Os05t0475700-02
Chr05	irgsp1_rep	three_prime_UTR	23388061	23388968	.	+	.	Parent=Os05t0475700-02
Chr05	irgsp1_rep	mRNA	23408004	23409080	.	-	.	ID=Os05t0476000-01;Name=Os05t0476000-01;Locus_id=Os05g0476000;Note=Protein of unknown function DUF688 domain containing protein.;Transcript_evidence=AK073548 (DDBJ%2C Best hit);ORF_evidence=A2Y5Q2 (UniProt);InterPro=Protein of unknown function DUF688 (IPR007789);NIAS_FLcDNA=J033044C05;Expression=AK073548;TENOR=Os05t0476000-01;KEGG=Os05t0476000-01
Chr05	irgsp1_rep	five_prime_UTR	23408953	23409080	.	-	.	Parent=Os05t0476000-01
Chr05	irgsp1_rep	CDS	23408305	23408952	.	-	0	Parent=Os05t0476000-01
Chr05	irgsp1_rep	three_prime_UTR	23408004	23408304	.	-	.	Parent=Os05t0476000-01
Chr05	irgsp1_rep	mRNA	23416463	23419334	.	+	.	ID=Os05t0476100-01;Name=Os05t0476100-01;Locus_id=Os05g0476100;Note=Protein of unknown function DUF827%2C plant family protein.;Transcript_evidence=AK064010 (DDBJ%2C Best hit),AK102615 (DDBJ%2C Best hit);ORF_evidence=A2Y5Q3 (UniProt);InterPro=Protein of unknown function DUF827%2C plant (IPR008545);NIAS_FLcDNA=001-124-G11,J033099E14;TENOR=Os05t0476100-01
Chr05	irgsp1_rep	five_prime_UTR	23416463	23416573	.	+	.	Parent=Os05t0476100-01
Chr05	irgsp1_rep	CDS	23416574	23416774	.	+	0	Parent=Os05t0476100-01
Chr05	irgsp1_rep	CDS	23417628	23419127	.	+	0	Parent=Os05t0476100-01
Chr05	irgsp1_rep	three_prime_UTR	23419128	23419334	.	+	.	Parent=Os05t0476100-01
Chr05	irgsp1_rep	mRNA	23419626	23424587	.	+	.	ID=Os05t0476200-01;Name=Os05t0476200-01;Locus_id=Os05g0476200;CGSNL Gene Symbol=MCM3;CGSNL Gene Name=MINI-CHROMOSOME MAINTENANCE PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsMCM3;Note=Similar to DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment).;Transcript_evidence=AK063430 (DDBJ%2C Best hit);ORF_evidence=NP_001105718.1 (RefSeq);GO=Biological Process: DNA replication (GO:0006260),Biological Process: DNA-dependent DNA replication initiation (GO:0006270),Cellular Component: nucleus (GO:0005634),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=Mini-Chromosome maintenance%2C DNA-dependent ATPase (IPR001208),ATPase%2C AAA+ type%2C core (IPR003593),Mini-Chromosome maintenance complex protein 3 (IPR008046),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),Mini-Chromosome maintenance%2C conserved site (IPR018525);NIAS_FLcDNA=001-115-D09;Oryzabase=9201;Expression=AK063430;TENOR=Os05t0476200-01;KEGG=Os05t0476200-01
Chr05	irgsp1_rep	five_prime_UTR	23419626	23419727	.	+	.	Parent=Os05t0476200-01
Chr05	irgsp1_rep	CDS	23419728	23419793	.	+	0	Parent=Os05t0476200-01
Chr05	irgsp1_rep	CDS	23419881	23419993	.	+	0	Parent=Os05t0476200-01
Chr05	irgsp1_rep	CDS	23420076	23420284	.	+	1	Parent=Os05t0476200-01
Chr05	irgsp1_rep	CDS	23420771	23420901	.	+	2	Parent=Os05t0476200-01
Chr05	irgsp1_rep	CDS	23420991	23421229	.	+	0	Parent=Os05t0476200-01
Chr05	irgsp1_rep	CDS	23421309	23421545	.	+	1	Parent=Os05t0476200-01
Chr05	irgsp1_rep	CDS	23421635	23421789	.	+	1	Parent=Os05t0476200-01
Chr05	irgsp1_rep	CDS	23421860	23422068	.	+	2	Parent=Os05t0476200-01
Chr05	irgsp1_rep	CDS	23422156	23422318	.	+	0	Parent=Os05t0476200-01
Chr05	irgsp1_rep	CDS	23422410	23422615	.	+	2	Parent=Os05t0476200-01
Chr05	irgsp1_rep	CDS	23422757	23422816	.	+	0	Parent=Os05t0476200-01
Chr05	irgsp1_rep	CDS	23422903	23422995	.	+	0	Parent=Os05t0476200-01
Chr05	irgsp1_rep	CDS	23423203	23423366	.	+	0	Parent=Os05t0476200-01
Chr05	irgsp1_rep	CDS	23423867	23423935	.	+	1	Parent=Os05t0476200-01
Chr05	irgsp1_rep	CDS	23424038	23424179	.	+	1	Parent=Os05t0476200-01
Chr05	irgsp1_rep	CDS	23424287	23424343	.	+	0	Parent=Os05t0476200-01
Chr05	irgsp1_rep	three_prime_UTR	23424344	23424587	.	+	.	Parent=Os05t0476200-01
Chr05	irgsp1_rep	mRNA	23419664	23424595	.	+	.	ID=Os05t0476200-02;Name=Os05t0476200-02;Locus_id=Os05g0476200;CGSNL Gene Symbol=MCM3;CGSNL Gene Name=MINI-CHROMOSOME MAINTENANCE PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsMCM3;Note=Similar to DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment).;Transcript_evidence=AK099369 (DDBJ%2C Best hit);ORF_evidence=NP_001105718.1 (RefSeq);GO=Biological Process: DNA replication (GO:0006260),Biological Process: DNA-dependent DNA replication initiation (GO:0006270),Cellular Component: nucleus (GO:0005634),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=Mini-Chromosome maintenance%2C DNA-dependent ATPase (IPR001208),ATPase%2C AAA+ type%2C core (IPR003593),Mini-Chromosome maintenance complex protein 3 (IPR008046),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),Mini-Chromosome maintenance%2C conserved site (IPR018525);NIAS_FLcDNA=J033048C09;Oryzabase=9201;Expression=AK099369;TENOR=Os05t0476200-02;KEGG=Os05t0476200-02
Chr05	irgsp1_rep	five_prime_UTR	23419664	23419727	.	+	.	Parent=Os05t0476200-02
Chr05	irgsp1_rep	CDS	23419728	23419793	.	+	0	Parent=Os05t0476200-02
Chr05	irgsp1_rep	CDS	23419881	23419993	.	+	0	Parent=Os05t0476200-02
Chr05	irgsp1_rep	CDS	23420076	23420284	.	+	1	Parent=Os05t0476200-02
Chr05	irgsp1_rep	CDS	23420771	23420901	.	+	2	Parent=Os05t0476200-02
Chr05	irgsp1_rep	CDS	23420991	23421229	.	+	0	Parent=Os05t0476200-02
Chr05	irgsp1_rep	CDS	23421309	23421545	.	+	1	Parent=Os05t0476200-02
Chr05	irgsp1_rep	CDS	23421635	23421789	.	+	1	Parent=Os05t0476200-02
Chr05	irgsp1_rep	CDS	23421860	23422068	.	+	2	Parent=Os05t0476200-02
Chr05	irgsp1_rep	CDS	23422156	23422318	.	+	0	Parent=Os05t0476200-02
Chr05	irgsp1_rep	CDS	23422410	23422615	.	+	2	Parent=Os05t0476200-02
Chr05	irgsp1_rep	CDS	23422757	23422816	.	+	0	Parent=Os05t0476200-02
Chr05	irgsp1_rep	CDS	23422903	23422995	.	+	0	Parent=Os05t0476200-02
Chr05	irgsp1_rep	CDS	23423203	23423366	.	+	0	Parent=Os05t0476200-02
Chr05	irgsp1_rep	CDS	23423867	23423935	.	+	1	Parent=Os05t0476200-02
Chr05	irgsp1_rep	CDS	23424038	23424179	.	+	1	Parent=Os05t0476200-02
Chr05	irgsp1_rep	CDS	23424287	23424343	.	+	0	Parent=Os05t0476200-02
Chr05	irgsp1_rep	three_prime_UTR	23424344	23424595	.	+	.	Parent=Os05t0476200-02
Chr05	irgsp1_rep	mRNA	23422895	23423320	.	-	.	ID=Os05t0476250-00;Name=Os05t0476250-00;Locus_id=Os05g0476250;Note=Non-protein coding transcript.;Transcript_evidence=EU951628 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0476250-00
Chr05	irgsp1_rep	exon	23422895	23423320	.	-	.	Parent=Os05t0476250-00
Chr05	irgsp1_rep	mRNA	23430812	23432177	.	+	.	ID=Os05t0476332-00;Name=Os05t0476332-00;Locus_id=Os05g0476332;Note=Non-protein coding transcript.;Transcript_evidence=tplb0042a18 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os05t0476332-00
Chr05	irgsp1_rep	exon	23430812	23432177	.	+	.	Parent=Os05t0476332-00
Chr05	irgsp1_rep	mRNA	23430891	23432198	.	-	.	ID=Os05t0476350-00;Name=Os05t0476350-00;Locus_id=Os05g0476350;CGSNL Gene Symbol=CIPK28;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 28;Oryzabase Gene Symbol Synonym(s)=OsCIPK28;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 28;Note=Similar to CBL-interacting protein kinase 28.;Transcript_evidence=A3B529 (UniProt);ORF_evidence=A3B529 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),NAF domain (IPR004041),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),NAF/FISL domain (IPR018451);Oryzabase=7416;TENOR=Os05t0476350-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	23430891	23432198	.	-	0	Parent=Os05t0476350-00
Chr05	irgsp1_rep	mRNA	23434146	23436478	.	-	.	ID=Os05t0476400-01;Name=Os05t0476400-01;Locus_id=Os05g0476400;Note=Similar to allergen-related.;Transcript_evidence=AK106783 (DDBJ%2C Best hit);ORF_evidence=NP_850143.1 (RefSeq);NIAS_FLcDNA=002-115-H09;Expression=AK106783;TENOR=Os05t0476400-01;KEGG=Os05t0476400-01
Chr05	irgsp1_rep	five_prime_UTR	23436176	23436478	.	-	.	Parent=Os05t0476400-01
Chr05	irgsp1_rep	CDS	23435989	23436175	.	-	0	Parent=Os05t0476400-01
Chr05	irgsp1_rep	CDS	23435647	23435696	.	-	2	Parent=Os05t0476400-01
Chr05	irgsp1_rep	CDS	23434817	23435026	.	-	0	Parent=Os05t0476400-01
Chr05	irgsp1_rep	three_prime_UTR	23434146	23434816	.	-	.	Parent=Os05t0476400-01
Chr05	irgsp1_rep	mRNA	23437625	23438563	.	+	.	ID=Os05t0476434-00;Name=Os05t0476434-00;Locus_id=Os05g0476434;Note=Non-protein coding transcript.;Transcript_evidence=tplb0045a22 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os05t0476434-00
Chr05	irgsp1_rep	exon	23437625	23438563	.	+	.	Parent=Os05t0476434-00
Chr05	irgsp1_rep	mRNA	23441433	23441813	.	+	.	ID=Os05t0476466-00;Name=Os05t0476466-00;Locus_id=Os05g0476466;Note=Similar to CBL-interacting protein kinase 28.;Transcript_evidence=A3B529 (UniProt);ORF_evidence=A3B529 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Calcium/calmodulin-dependent/calcium-dependent protein kinase (IPR020636);TENOR=Os05t0476466-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	23441433	23441813	.	+	0	Parent=Os05t0476466-00
Chr05	irgsp1_rep	mRNA	23441454	23442784	.	-	.	ID=Os05t0476583-00;Name=Os05t0476583-00;Locus_id=Os05g0476583;Note=Non-protein coding transcript.;Transcript_evidence=tplb0042a18 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os05t0476583-00
Chr05	irgsp1_rep	exon	23441454	23442784	.	-	.	Parent=Os05t0476583-00
Chr05	irgsp1_rep	mRNA	23463142	23465536	.	+	.	ID=Os05t0476700-01;Name=Os05t0476700-01;Locus_id=Os05g0476700;RAP-DB Gene Symbol Synonym(s)=OsPUB2;RAP-DB Gene Name Synonym(s)=arm repeat protein%2C plant U-box-containing protein 2%2C U-box protein 2;Oryzabase Gene Symbol Synonym(s)=OsPUB2;Oryzabase Gene Name Synonym(s)=arm repeat protein%2C plant U-box-containing protein 2%2C U-box protein 2;Note=U-box E3ubiquitin ligase%2C Positive regulation of cold stress response;Transcript_evidence=XM_015782045.1,AK099529 (truncated);ORF_evidence=Q75GN8;GO=Biological Process: protein ubiquitination (GO:0016567),Molecular Function: ubiquitin-protein transferase activity (GO:0004842),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),U box domain (IPR003613),Armadillo-type fold (IPR016024),Armadillo-like helical (IPR011989),Armadillo (IPR000225);NIAS_FLcDNA=J013031J19 (truncated);Manual Curation=February 21%2C 2017;Literature_PMID=28163713;Oryzabase=16282;Expression=AK099529;TENOR=Os05t0476700-01;KEGG=Os05t0476700-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=cytosol (GO:0005829) [small cytosolic punctate bodies], nucleus (GO:0005634)
Chr05	irgsp1_rep	five_prime_UTR	23463142	23463303	.	+	.	Parent=Os05t0476700-01
Chr05	irgsp1_rep	CDS	23463304	23465337	.	+	0	Parent=Os05t0476700-01
Chr05	irgsp1_rep	three_prime_UTR	23465338	23465536	.	+	.	Parent=Os05t0476700-01
Chr05	irgsp1_rep	mRNA	23477021	23478552	.	-	.	ID=Os05t0477100-01;Name=Os05t0477100-01;Locus_id=Os05g0477100;Note=Hypothetical protein.;Transcript_evidence=AK108641 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-148-A05;Expression=AK108641;TENOR=Os05t0477100-01;KEGG=Os05t0477100-01
Chr05	irgsp1_rep	five_prime_UTR	23478372	23478552	.	-	.	Parent=Os05t0477100-01
Chr05	irgsp1_rep	CDS	23477643	23478371	.	-	0	Parent=Os05t0477100-01
Chr05	irgsp1_rep	three_prime_UTR	23477021	23477642	.	-	.	Parent=Os05t0477100-01
Chr05	irgsp1_rep	mRNA	23477235	23478827	.	+	.	ID=Os05t0477200-01;Name=Os05t0477200-01;Locus_id=Os05g0477200;Oryzabase Gene Symbol Synonym(s)=OsOFP15%2C OsOFP22;Oryzabase Gene Name Synonym(s)=OVATE family protein 15%2C ovate family protein 22%2C OVATE-domain containing protein 22;Note=Hypothetical conserved gene.;Transcript_evidence=AK242024 (DDBJ%2C Best hit);ORF_evidence=NP_001055838.1 (RefSeq);InterPro=Domain of unknown function DUF623 (IPR006458);NIAS_FLcDNA=J075112L03;Oryzabase=18311;TENOR=Os05t0477200-01;KEGG=Os05t0477200-01
Chr05	irgsp1_rep	five_prime_UTR	23477235	23477235	.	+	.	Parent=Os05t0477200-01
Chr05	irgsp1_rep	CDS	23477236	23478507	.	+	0	Parent=Os05t0477200-01
Chr05	irgsp1_rep	three_prime_UTR	23478508	23478827	.	+	.	Parent=Os05t0477200-01
Chr05	irgsp1_rep	mRNA	23483080	23485770	.	-	.	ID=Os05t0477300-03;Name=Os05t0477300-03;Locus_id=Os05g0477300;Note=Ribosomal protein S26e domain containing protein.;Transcript_evidence=AK121584 (DDBJ%2C Best hit),AK061933 (DDBJ%2C Best hit),AK098982 (DDBJ%2C Best hit),AK119683 (DDBJ%2C Best hit),AK119693 (DDBJ%2C Best hit),AK119797 (DDBJ%2C Best hit);ORF_evidence=A2Y5R4 (UniProt);NIAS_FLcDNA=J033037F24,001-042-D01,J013091A22,002-157-A02,002-157-C03,002-175-H04;Expression=AK121584;TENOR=Os05t0477300-03;KEGG=Os05t0477300-03
Chr05	irgsp1_rep	five_prime_UTR	23485720	23485770	.	-	.	Parent=Os05t0477300-03
Chr05	irgsp1_rep	CDS	23485717	23485719	.	-	0	Parent=Os05t0477300-03
Chr05	irgsp1_rep	CDS	23485496	23485588	.	-	0	Parent=Os05t0477300-03
Chr05	irgsp1_rep	CDS	23485288	23485372	.	-	0	Parent=Os05t0477300-03
Chr05	irgsp1_rep	CDS	23485062	23485192	.	-	2	Parent=Os05t0477300-03
Chr05	irgsp1_rep	CDS	23483564	23483662	.	-	0	Parent=Os05t0477300-03
Chr05	irgsp1_rep	three_prime_UTR	23483080	23483563	.	-	.	Parent=Os05t0477300-03
Chr05	irgsp1_rep	mRNA	23487857	23491593	.	-	.	ID=Os05t0477500-01;Name=Os05t0477500-01;Locus_id=Os05g0477500;Note=Protein of unknown function DUF3615 domain containing protein.;Transcript_evidence=AK110953 (DDBJ%2C Best hit);ORF_evidence=B9FKS1 (UniProt);InterPro=Protein of unknown function DUF3615 (IPR022059);NIAS_FLcDNA=002-174-A03;Expression=AK110953;TENOR=Os05t0477500-01;KEGG=Os05t0477500-01
Chr05	irgsp1_rep	five_prime_UTR	23491374	23491593	.	-	.	Parent=Os05t0477500-01
Chr05	irgsp1_rep	CDS	23491285	23491373	.	-	0	Parent=Os05t0477500-01
Chr05	irgsp1_rep	CDS	23490111	23490228	.	-	1	Parent=Os05t0477500-01
Chr05	irgsp1_rep	CDS	23489720	23489996	.	-	0	Parent=Os05t0477500-01
Chr05	irgsp1_rep	CDS	23488668	23488828	.	-	2	Parent=Os05t0477500-01
Chr05	irgsp1_rep	three_prime_UTR	23488541	23488667	.	-	.	Parent=Os05t0477500-01
Chr05	irgsp1_rep	three_prime_UTR	23487857	23488403	.	-	.	Parent=Os05t0477500-01
Chr05	irgsp1_rep	mRNA	23495654	23497572	.	-	.	ID=Os05t0477600-01;Name=Os05t0477600-01;Locus_id=Os05g0477600;CGSNL Gene Symbol=EXPA4;CGSNL Gene Name=ALPHA-EXPANSIN 4;Oryzabase Gene Symbol Synonym(s)=OsEXP4 (Os-EXP4)%2C OsEXPA4%2C OsEXP4%2C Os-EXP4%2C OsaEXPa1.22;Oryzabase Gene Name Synonym(s)=Rice expansin-4%2C Expansin-A4%2C Alpha-expansin-4;Note=Alpha-expansin OsEXPA4.;Transcript_evidence=AK100179 (DDBJ%2C Best hit);ORF_evidence=Q0DHB7 (UniProt);GO=Biological Process: plant-type cell wall organization (GO:0009664),Cellular Component: extracellular region (GO:0005576);InterPro=Expansin (IPR002963),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);NIAS_FLcDNA=J023029P10;Oryzabase=2967;Expression=AK100179;TENOR=Os05t0477600-01;KEGG=Os05t0477600-01
Chr05	irgsp1_rep	five_prime_UTR	23497511	23497572	.	-	.	Parent=Os05t0477600-01
Chr05	irgsp1_rep	CDS	23497387	23497510	.	-	0	Parent=Os05t0477600-01
Chr05	irgsp1_rep	CDS	23496980	23497292	.	-	2	Parent=Os05t0477600-01
Chr05	irgsp1_rep	CDS	23496160	23496463	.	-	1	Parent=Os05t0477600-01
Chr05	irgsp1_rep	three_prime_UTR	23495654	23496159	.	-	.	Parent=Os05t0477600-01
Chr05	irgsp1_rep	mRNA	23495829	23496064	.	-	.	ID=Os05t0477600-02;Name=Os05t0477600-02;Locus_id=Os05g0477600;CGSNL Gene Symbol=EXPA4;CGSNL Gene Name=ALPHA-EXPANSIN 4;Oryzabase Gene Symbol Synonym(s)=OsEXP4 (Os-EXP4)%2C OsEXPA4%2C OsEXP4%2C Os-EXP4%2C OsaEXPa1.22;Oryzabase Gene Name Synonym(s)=Rice expansin-4%2C Expansin-A4%2C Alpha-expansin-4;Note=Non-protein coding transcript.;Transcript_evidence=AK058811 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-003-D02;Oryzabase=2967;TENOR=Os05t0477600-02
Chr05	irgsp1_rep	exon	23495829	23496064	.	-	.	Parent=Os05t0477600-02
Chr05	irgsp1_rep	mRNA	23496145	23497251	.	+	.	ID=Os05t0477666-00;Name=Os05t0477666-00;Locus_id=Os05g0477666;Note=Hypothetical gene.;Transcript_evidence=BT016845 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0477666-00
Chr05	irgsp1_rep	CDS	23496145	23496462	.	+	0	Parent=Os05t0477666-00
Chr05	irgsp1_rep	CDS	23496979	23497251	.	+	0	Parent=Os05t0477666-00
Chr05	irgsp1_rep	mRNA	23502667	23504193	.	-	.	ID=Os05t0477800-01;Name=Os05t0477800-01;Locus_id=Os05g0477800;Note=Conserved hypothetical protein.;Transcript_evidence=AK109779 (DDBJ%2C Best hit);ORF_evidence=NP_001172445.1 (RefSeq);NIAS_FLcDNA=002-147-B11;TENOR=Os05t0477800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	23504192	23504193	.	-	.	Parent=Os05t0477800-01
Chr05	irgsp1_rep	CDS	23503760	23504191	.	-	0	Parent=Os05t0477800-01
Chr05	irgsp1_rep	three_prime_UTR	23503537	23503759	.	-	.	Parent=Os05t0477800-01
Chr05	irgsp1_rep	three_prime_UTR	23502667	23503445	.	-	.	Parent=Os05t0477800-01
Chr05	irgsp1_rep	mRNA	23508215	23509009	.	+	.	ID=Os05t0477900-01;Name=Os05t0477900-01;Locus_id=Os05g0477900;Oryzabase Gene Symbol Synonym(s)=OsLTP1.4%2C OsLtpI.4;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein 1.4%2C lipid transfer protein 1.4%2C type 1 non-specific lipid transfer protein 4;Note=Similar to nonspecific lipid-transfer protein.;Transcript_evidence=AK243196 (DDBJ%2C Best hit);ORF_evidence=A2Y5R8 (UniProt);GO=Biological Process: lipid transport (GO:0006869),Molecular Function: lipid binding (GO:0008289);InterPro=Plant lipid transfer protein/Par allergen (IPR000528),Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=J100040A06;Oryzabase=13513;TENOR=Os05t0477900-01;KEGG=Os05t0477900-01
Chr05	irgsp1_rep	five_prime_UTR	23508215	23508215	.	+	.	Parent=Os05t0477900-01
Chr05	irgsp1_rep	CDS	23508216	23508457	.	+	0	Parent=Os05t0477900-01
Chr05	irgsp1_rep	CDS	23508830	23508839	.	+	1	Parent=Os05t0477900-01
Chr05	irgsp1_rep	three_prime_UTR	23508840	23509009	.	+	.	Parent=Os05t0477900-01
Chr05	irgsp1_rep	mRNA	23510183	23511070	.	+	.	ID=Os05t0478000-01;Name=Os05t0478000-01;Locus_id=Os05g0478000;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK111029 (DDBJ%2C Best hit);ORF_evidence=B6SLM8 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=002-174-H07;Expression=AK111029;TENOR=Os05t0478000-01;KEGG=Os05t0478000-01
Chr05	irgsp1_rep	five_prime_UTR	23510183	23510232	.	+	.	Parent=Os05t0478000-01
Chr05	irgsp1_rep	CDS	23510233	23510802	.	+	0	Parent=Os05t0478000-01
Chr05	irgsp1_rep	three_prime_UTR	23510803	23511070	.	+	.	Parent=Os05t0478000-01
Chr05	irgsp1_rep	mRNA	23515083	23519977	.	+	.	ID=Os05t0478200-01;Name=Os05t0478200-01;Locus_id=Os05g0478200;Note=Conserved hypothetical protein.;Transcript_evidence=AK243445 (DDBJ%2C Best hit);ORF_evidence=Q75GN0 (UniProt);NIAS_FLcDNA=J100068L21;TENOR=Os05t0478200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	23515083	23515108	.	+	.	Parent=Os05t0478200-01
Chr05	irgsp1_rep	CDS	23515109	23515477	.	+	0	Parent=Os05t0478200-01
Chr05	irgsp1_rep	CDS	23515596	23516004	.	+	0	Parent=Os05t0478200-01
Chr05	irgsp1_rep	CDS	23518317	23518432	.	+	2	Parent=Os05t0478200-01
Chr05	irgsp1_rep	CDS	23519182	23519652	.	+	0	Parent=Os05t0478200-01
Chr05	irgsp1_rep	three_prime_UTR	23519653	23519977	.	+	.	Parent=Os05t0478200-01
Chr05	irgsp1_rep	mRNA	23524138	23524982	.	-	.	ID=Os05t0478250-00;Name=Os05t0478250-00;Locus_id=Os05g0478250;Note=Hypothetical protein.;Transcript_evidence=AK369221 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0478250-00
Chr05	irgsp1_rep	five_prime_UTR	23524920	23524982	.	-	.	Parent=Os05t0478250-00
Chr05	irgsp1_rep	CDS	23524470	23524919	.	-	0	Parent=Os05t0478250-00
Chr05	irgsp1_rep	three_prime_UTR	23524396	23524469	.	-	.	Parent=Os05t0478250-00
Chr05	irgsp1_rep	three_prime_UTR	23524138	23524332	.	-	.	Parent=Os05t0478250-00
Chr05	irgsp1_rep	mRNA	23524477	23527493	.	+	.	ID=Os05t0478300-01;Name=Os05t0478300-01;Locus_id=Os05g0478300;Note=Hypothetical conserved gene.;Transcript_evidence=AK242838 (DDBJ%2C Best hit);ORF_evidence=NP_001055847.2 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J090069M16;TENOR=Os05t0478300-01;KEGG=Os05t0478300-01
Chr05	irgsp1_rep	CDS	23524477	23525378	.	+	0	Parent=Os05t0478300-01
Chr05	irgsp1_rep	CDS	23525794	23527255	.	+	1	Parent=Os05t0478300-01
Chr05	irgsp1_rep	three_prime_UTR	23527256	23527493	.	+	.	Parent=Os05t0478300-01
Chr05	irgsp1_rep	mRNA	23529423	23530499	.	-	.	ID=Os05t0478400-00;Name=Os05t0478400-00;Locus_id=Os05g0478400;CGSNL Gene Symbol=WRKY48;CGSNL Gene Name=WRKY GENE 48;Oryzabase Gene Symbol Synonym(s)=OsWRKY48;Oryzabase Gene Name Synonym(s)=Rice WRKY gene48;Note=Similar to WRKY transcription factor 48.;Transcript_evidence=BT086414 (DDBJ);ORF_evidence=Q6IEN3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6562;TENOR=Os05t0478400-00;KEGG=Os05t0478400-00
Chr05	irgsp1_rep	CDS	23529423	23530499	.	-	0	Parent=Os05t0478400-00
Chr05	irgsp1_rep	mRNA	23536115	23539008	.	-	.	ID=Os05t0478700-00;Name=Os05t0478700-00;Locus_id=Os05g0478700;CGSNL Gene Symbol=WRKY84;CGSNL Gene Name=WRKY GENE 84;Oryzabase Gene Symbol Synonym(s)=OsWRKY84;Note=Hypothetical conserved gene.;Transcript_evidence=CT836407 (DDBJ%2C Best hit);ORF_evidence=Q6IER3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=9215;TENOR=Os05t0478700-00;KEGG=Os05t0478700-00
Chr05	irgsp1_rep	five_prime_UTR	23538944	23539008	.	-	.	Parent=Os05t0478700-00
Chr05	irgsp1_rep	CDS	23538570	23538943	.	-	0	Parent=Os05t0478700-00
Chr05	irgsp1_rep	CDS	23538009	23538101	.	-	1	Parent=Os05t0478700-00
Chr05	irgsp1_rep	CDS	23536374	23536749	.	-	1	Parent=Os05t0478700-00
Chr05	irgsp1_rep	three_prime_UTR	23536115	23536373	.	-	.	Parent=Os05t0478700-00
Chr05	irgsp1_rep	mRNA	23550611	23551282	.	-	.	ID=Os05t0478800-00;Name=Os05t0478800-00;Locus_id=Os05g0478800;CGSNL Gene Symbol=WRKY54;CGSNL Gene Name=WRKY GENE 54;Oryzabase Gene Symbol Synonym(s)=OsWRKY54;Oryzabase Gene Name Synonym(s)=Rice WRKY gene54;Note=Similar to WRKY transcription factor 48.;Transcript_evidence=EU665447 (DDBJ);ORF_evidence=Q6IEN3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6568;TENOR=Os05t0478800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	23550611	23551282	.	-	0	Parent=Os05t0478800-00
Chr05	irgsp1_rep	mRNA	23551056	23553806	.	+	.	ID=Os05t0479025-01;Name=Os05t0479025-01;Locus_id=Os05g0479025;Note=Hypothetical gene.;Transcript_evidence=AK288691 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090060J18;TENOR=Os05t0479025-01;KEGG=Os05t0479025-01
Chr05	irgsp1_rep	five_prime_UTR	23551056	23553235	.	+	.	Parent=Os05t0479025-01
Chr05	irgsp1_rep	CDS	23553236	23553661	.	+	0	Parent=Os05t0479025-01
Chr05	irgsp1_rep	three_prime_UTR	23553662	23553806	.	+	.	Parent=Os05t0479025-01
Chr05	irgsp1_rep	mRNA	23579212	23579928	.	-	.	ID=Os05t0479475-00;Name=Os05t0479475-00;Locus_id=Os05g0479475;Note=Hypothetical gene.;Transcript_evidence=AK102101 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;Expression=AK102101;TENOR=Os05t0479475-00;KEGG=Os05t0479475-00
Chr05	irgsp1_rep	CDS	23579578	23579928	.	-	0	Parent=Os05t0479475-00
Chr05	irgsp1_rep	three_prime_UTR	23579212	23579577	.	-	.	Parent=Os05t0479475-00
Chr05	irgsp1_rep	mRNA	23581251	23585016	.	-	.	ID=Os05t0479700-00;Name=Os05t0479700-00;Locus_id=Os05g0479700;Note=NB-ARC domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001055848.1 (RefSeq);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os05t0479700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	23584568	23585016	.	-	0	Parent=Os05t0479700-00
Chr05	irgsp1_rep	CDS	23582145	23583425	.	-	1	Parent=Os05t0479700-00
Chr05	irgsp1_rep	CDS	23581251	23581590	.	-	1	Parent=Os05t0479700-00
Chr05	irgsp1_rep	mRNA	23586827	23590386	.	+	.	ID=Os05t0479800-01;Name=Os05t0479800-01;Locus_id=Os05g0479800;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=AK121345 (DDBJ%2C Best hit);ORF_evidence=Q2QZJ6 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J023121C14;TENOR=Os05t0479800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	23586827	23586896	.	+	.	Parent=Os05t0479800-01
Chr05	irgsp1_rep	CDS	23586897	23587654	.	+	0	Parent=Os05t0479800-01
Chr05	irgsp1_rep	CDS	23588006	23590121	.	+	1	Parent=Os05t0479800-01
Chr05	irgsp1_rep	three_prime_UTR	23590122	23590386	.	+	.	Parent=Os05t0479800-01
Chr05	irgsp1_rep	mRNA	23593040	23595210	.	-	.	ID=Os05t0479900-01;Name=Os05t0479900-01;Locus_id=Os05g0479900;Note=Protein of unknown function DUF3133 domain containing protein.;Transcript_evidence=AK109153 (DDBJ%2C Best hit);ORF_evidence=A2Y5S9 (UniProt);InterPro=Protein of unknown function DUF3133 (IPR021480);NIAS_FLcDNA=002-155-F12;Expression=AK109153;TENOR=Os05t0479900-01;KEGG=Os05t0479900-01
Chr05	irgsp1_rep	five_prime_UTR	23595147	23595210	.	-	.	Parent=Os05t0479900-01
Chr05	irgsp1_rep	five_prime_UTR	23594489	23594602	.	-	.	Parent=Os05t0479900-01
Chr05	irgsp1_rep	CDS	23594371	23594488	.	-	0	Parent=Os05t0479900-01
Chr05	irgsp1_rep	CDS	23593376	23594256	.	-	2	Parent=Os05t0479900-01
Chr05	irgsp1_rep	three_prime_UTR	23593040	23593375	.	-	.	Parent=Os05t0479900-01
Chr05	irgsp1_rep	mRNA	23598187	23602596	.	+	.	ID=Os05t0480000-01;Name=Os05t0480000-01;Locus_id=Os05g0480000;RAP-DB Gene Symbol Synonym(s)=OsSTN8;RAP-DB Gene Name Synonym(s)=STN8 kinase;CGSNL Gene Symbol=STN8;CGSNL Gene Name=STATE TRANSITION 8;Oryzabase Gene Symbol Synonym(s)=OsSTN8;Oryzabase Gene Name Synonym(s)=STN8 kinase;Note=Serine/threonine protein kinase%2C Photosystem II (PSII) repair%2C Phosphorylation of PSII core protein;Transcript_evidence=AK287774;ORF_evidence=B9FKS6;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J065169O15;Manual Curation=November 21%2C 2013;Literature_PMID=24103067;Oryzabase=15090;TENOR=Os05t0480000-01;KEGG=Os05t0480000-01
Chr05	irgsp1_rep	five_prime_UTR	23598187	23598230	.	+	.	Parent=Os05t0480000-01
Chr05	irgsp1_rep	CDS	23598231	23599253	.	+	0	Parent=Os05t0480000-01
Chr05	irgsp1_rep	CDS	23599948	23600352	.	+	0	Parent=Os05t0480000-01
Chr05	irgsp1_rep	CDS	23600454	23600801	.	+	0	Parent=Os05t0480000-01
Chr05	irgsp1_rep	three_prime_UTR	23600802	23602596	.	+	.	Parent=Os05t0480000-01
Chr05	irgsp1_rep	mRNA	23599039	23601147	.	+	.	ID=Os05t0480000-02;Name=Os05t0480000-02;Locus_id=Os05g0480000;CGSNL Gene Symbol=STN8;CGSNL Gene Name=STATE TRANSITION 8;Oryzabase Gene Symbol Synonym(s)=OsSTN8;Oryzabase Gene Name Synonym(s)=STN8 kinase;Note=Similar to STN8;Transcript_evidence=AK061052 (DDBJ%2C Best hit);ORF_evidence=NP_195812.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=006-205-G05;Oryzabase=15090;TENOR=Os05t0480000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	23599039	23599040	.	+	.	Parent=Os05t0480000-02
Chr05	irgsp1_rep	CDS	23599041	23599253	.	+	0	Parent=Os05t0480000-02
Chr05	irgsp1_rep	CDS	23599948	23600352	.	+	0	Parent=Os05t0480000-02
Chr05	irgsp1_rep	CDS	23600454	23600801	.	+	0	Parent=Os05t0480000-02
Chr05	irgsp1_rep	three_prime_UTR	23600802	23601147	.	+	.	Parent=Os05t0480000-02
Chr05	irgsp1_rep	mRNA	23600961	23605047	.	-	.	ID=Os05t0480200-01;Name=Os05t0480200-01;Locus_id=Os05g0480200;CGSNL Gene Symbol=TRXH9;CGSNL Gene Name=THIOREDOXIN H-TYPE 9;Oryzabase Gene Symbol Synonym(s)=OsTRXh9%2C OsTrx20%2C Trx20;Oryzabase Gene Name Synonym(s)=Thioredoxin H-type 9%2C H-type Thioredoxin 9%2C Thioredoxin 20;Note=Thioredoxin domain 2 containing protein.;Transcript_evidence=AK071198 (DDBJ%2C Best hit);ORF_evidence=C5YZT7 (UniProt);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Thioredoxin (IPR005746),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766);NIAS_FLcDNA=J023084F15;Oryzabase=9912;Expression=AK071198;TENOR=Os05t0480200-01;KEGG=Os05t0480200-01
Chr05	irgsp1_rep	five_prime_UTR	23604919	23605047	.	-	.	Parent=Os05t0480200-01
Chr05	irgsp1_rep	five_prime_UTR	23602004	23602046	.	-	.	Parent=Os05t0480200-01
Chr05	irgsp1_rep	CDS	23601986	23602003	.	-	0	Parent=Os05t0480200-01
Chr05	irgsp1_rep	CDS	23601710	23601823	.	-	0	Parent=Os05t0480200-01
Chr05	irgsp1_rep	CDS	23601503	23601625	.	-	0	Parent=Os05t0480200-01
Chr05	irgsp1_rep	CDS	23601235	23601387	.	-	0	Parent=Os05t0480200-01
Chr05	irgsp1_rep	three_prime_UTR	23600961	23601234	.	-	.	Parent=Os05t0480200-01
Chr05	irgsp1_rep	mRNA	23602448	23603324	.	-	.	ID=Os05t0480300-01;Name=Os05t0480300-01;Locus_id=Os05g0480300;Note=Conserved hypothetical protein.;Transcript_evidence=AK066012 (DDBJ%2C Best hit);ORF_evidence=B9FSY6 (UniProt);NIAS_FLcDNA=J013048E19;TENOR=Os05t0480300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	23603293	23603324	.	-	.	Parent=Os05t0480300-01
Chr05	irgsp1_rep	CDS	23603035	23603292	.	-	0	Parent=Os05t0480300-01
Chr05	irgsp1_rep	three_prime_UTR	23602448	23603034	.	-	.	Parent=Os05t0480300-01
Chr05	irgsp1_rep	mRNA	23604627	23605350	.	+	.	ID=Os05t0480350-00;Name=Os05t0480350-00;Locus_id=Os05g0480350;Note=Hypothetical gene.;Transcript_evidence=CT828047 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os05t0480350-00;KEGG=Os05t0480350-00
Chr05	irgsp1_rep	five_prime_UTR	23604627	23604888	.	+	.	Parent=Os05t0480350-00
Chr05	irgsp1_rep	CDS	23604889	23605119	.	+	0	Parent=Os05t0480350-00
Chr05	irgsp1_rep	three_prime_UTR	23605120	23605350	.	+	.	Parent=Os05t0480350-00
Chr05	irgsp1_rep	mRNA	23605439	23610991	.	-	.	ID=Os05t0480400-01;Name=Os05t0480400-01;Locus_id=Os05g0480400;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK120115 (DDBJ%2C Best hit);ORF_evidence=C0LGW1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013025M17;Expression=AK120115;TENOR=Os05t0480400-01;KEGG=Os05t0480400-01
Chr05	irgsp1_rep	five_prime_UTR	23610471	23610991	.	-	.	Parent=Os05t0480400-01
Chr05	irgsp1_rep	five_prime_UTR	23608343	23608412	.	-	.	Parent=Os05t0480400-01
Chr05	irgsp1_rep	CDS	23607055	23608342	.	-	0	Parent=Os05t0480400-01
Chr05	irgsp1_rep	CDS	23605766	23606394	.	-	2	Parent=Os05t0480400-01
Chr05	irgsp1_rep	three_prime_UTR	23605439	23605765	.	-	.	Parent=Os05t0480400-01
Chr05	irgsp1_rep	mRNA	23617639	23618310	.	+	.	ID=Os05t0480500-01;Name=Os05t0480500-01;Locus_id=Os05g0480500;Note=Hypothetical protein.;Transcript_evidence=AK062331 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-101-D10;Expression=AK062331;TENOR=Os05t0480500-01;KEGG=Os05t0480500-01
Chr05	irgsp1_rep	CDS	23617639	23618142	.	+	0	Parent=Os05t0480500-01
Chr05	irgsp1_rep	three_prime_UTR	23618143	23618310	.	+	.	Parent=Os05t0480500-01
Chr05	irgsp1_rep	mRNA	23622731	23627034	.	-	.	ID=Os05t0480600-01;Name=Os05t0480600-01;Locus_id=Os05g0480600;Note=Similar to transposon protein CACTA%2C En/Spm sub-class.;Transcript_evidence=AK102461 (DDBJ%2C Best hit);ORF_evidence=NP_001147994.1 (RefSeq);NIAS_FLcDNA=J033094D02;Expression=AK102461;TENOR=Os05t0480600-01;KEGG=Os05t0480600-01
Chr05	irgsp1_rep	five_prime_UTR	23626712	23627034	.	-	.	Parent=Os05t0480600-01
Chr05	irgsp1_rep	five_prime_UTR	23626575	23626615	.	-	.	Parent=Os05t0480600-01
Chr05	irgsp1_rep	CDS	23626528	23626574	.	-	0	Parent=Os05t0480600-01
Chr05	irgsp1_rep	CDS	23625600	23625723	.	-	1	Parent=Os05t0480600-01
Chr05	irgsp1_rep	CDS	23623670	23624848	.	-	0	Parent=Os05t0480600-01
Chr05	irgsp1_rep	CDS	23623047	23623469	.	-	0	Parent=Os05t0480600-01
Chr05	irgsp1_rep	three_prime_UTR	23622731	23623046	.	-	.	Parent=Os05t0480600-01
Chr05	irgsp1_rep	mRNA	23632284	23633975	.	+	.	ID=Os05t0480700-01;Name=Os05t0480700-01;Locus_id=Os05g0480700;Note=Similar to Vacuolar ATP synthase subunit E (EC 3.6.3.14) (V-ATPase E subunit) (Vacuolar proton pump E subunit).;Transcript_evidence=AK100850 (DDBJ%2C Best hit);ORF_evidence=B3TLU2 (UniProt);GO=Biological Process: ATP hydrolysis coupled proton transport (GO:0015991),Cellular Component: proton-transporting two-sector ATPase complex%2C catalytic domain (GO:0033178),Molecular Function: proton-transporting ATPase activity%2C rotational mechanism (GO:0046961);InterPro=ATPase%2C V1/A1 complex%2C subunit E (IPR002842);NIAS_FLcDNA=J023123I11;Expression=AK100850;TENOR=Os05t0480700-01;KEGG=Os05t0480700-01 (EC:3.6.3.14)
Chr05	irgsp1_rep	five_prime_UTR	23632284	23632382	.	+	.	Parent=Os05t0480700-01
Chr05	irgsp1_rep	CDS	23632383	23632484	.	+	0	Parent=Os05t0480700-01
Chr05	irgsp1_rep	CDS	23632570	23632670	.	+	0	Parent=Os05t0480700-01
Chr05	irgsp1_rep	CDS	23632807	23632963	.	+	1	Parent=Os05t0480700-01
Chr05	irgsp1_rep	CDS	23633193	23633389	.	+	0	Parent=Os05t0480700-01
Chr05	irgsp1_rep	CDS	23633491	23633590	.	+	1	Parent=Os05t0480700-01
Chr05	irgsp1_rep	CDS	23633673	23633711	.	+	0	Parent=Os05t0480700-01
Chr05	irgsp1_rep	three_prime_UTR	23633712	23633975	.	+	.	Parent=Os05t0480700-01
Chr05	irgsp1_rep	mRNA	23636020	23637614	.	+	.	ID=Os05t0480800-00;Name=Os05t0480800-00;Locus_id=Os05g0480800;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001174467.1 (RefSeq);TENOR=Os05t0480800-00;KEGG=Os05t0480800-00
Chr05	irgsp1_rep	CDS	23636020	23636184	.	+	0	Parent=Os05t0480800-00
Chr05	irgsp1_rep	CDS	23636308	23636529	.	+	0	Parent=Os05t0480800-00
Chr05	irgsp1_rep	CDS	23637033	23637299	.	+	0	Parent=Os05t0480800-00
Chr05	irgsp1_rep	CDS	23637426	23637614	.	+	0	Parent=Os05t0480800-00
Chr05	irgsp1_rep	mRNA	23642766	23646669	.	+	.	ID=Os05t0481000-01;Name=Os05t0481000-01;Locus_id=Os05g0481000;RAP-DB Gene Symbol Synonym(s)=OsSNAT1%2C SNAT1;RAP-DB Gene Name Synonym(s)=SEROTONIN N-ACETYLTRANSFERASE-1%2C serotonin N-acetyltransferase 1;CGSNL Gene Symbol=SNAT1;CGSNL Gene Name=SEROTONIN N-ACETYLTRANSFERASE-1;Oryzabase Gene Symbol Synonym(s)=OsSNAT1%2C OsSNAT%2C SNAT;Oryzabase Gene Name Synonym(s)=serotonin N-acetyltransferase-1%2C serotonin N-acetyltransferase 1;Note=Serotonin N-acetyltransferase%2C Melatonin synthesis;Transcript_evidence=AK059369;ORF_evidence=Q5KQI6;GO=Molecular Function: N-acetyltransferase activity (GO:0008080);InterPro=Acyl-CoA N-acyltransferase (IPR016181),GNAT domain (IPR000182);NIAS_FLcDNA=001-026-E11;Manual Curation=June 9%2C 2017;Literature_PMID=28118490,27121038;Oryzabase=21090;Expression=AK059369;TENOR=Os05t0481000-01;KEGG=Os05t0481000-01 (EC:2.3.1.87)
Chr05	irgsp1_rep	five_prime_UTR	23642766	23642950	.	+	.	Parent=Os05t0481000-01
Chr05	irgsp1_rep	CDS	23642951	23643089	.	+	0	Parent=Os05t0481000-01
Chr05	irgsp1_rep	CDS	23643740	23643803	.	+	2	Parent=Os05t0481000-01
Chr05	irgsp1_rep	CDS	23644436	23644622	.	+	1	Parent=Os05t0481000-01
Chr05	irgsp1_rep	CDS	23644944	23645043	.	+	0	Parent=Os05t0481000-01
Chr05	irgsp1_rep	CDS	23645191	23645291	.	+	2	Parent=Os05t0481000-01
Chr05	irgsp1_rep	CDS	23645371	23645464	.	+	0	Parent=Os05t0481000-01
Chr05	irgsp1_rep	CDS	23646342	23646421	.	+	2	Parent=Os05t0481000-01
Chr05	irgsp1_rep	three_prime_UTR	23646422	23646669	.	+	.	Parent=Os05t0481000-01
Chr05	irgsp1_rep	mRNA	23642769	23646681	.	+	.	ID=Os05t0481000-02;Name=Os05t0481000-02;Locus_id=Os05g0481000;CGSNL Gene Symbol=SNAT1;CGSNL Gene Name=SEROTONIN N-ACETYLTRANSFERASE-1;Oryzabase Gene Symbol Synonym(s)=OsSNAT1%2C OsSNAT%2C SNAT;Oryzabase Gene Name Synonym(s)=serotonin N-acetyltransferase-1%2C serotonin N-acetyltransferase 1;Note=Similar to ATNSI (NUCLEAR SHUTTLE INTERACTING)%3B N-acetyltransferase.;Transcript_evidence=AK068619 (DDBJ%2C Best hit);ORF_evidence=NP_564387.1 (RefSeq);NIAS_FLcDNA=J013157F02;Oryzabase=21090;TENOR=Os05t0481000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	23642769	23642950	.	+	.	Parent=Os05t0481000-02
Chr05	irgsp1_rep	CDS	23642951	23643089	.	+	0	Parent=Os05t0481000-02
Chr05	irgsp1_rep	CDS	23643740	23643803	.	+	2	Parent=Os05t0481000-02
Chr05	irgsp1_rep	CDS	23644436	23644622	.	+	1	Parent=Os05t0481000-02
Chr05	irgsp1_rep	CDS	23644944	23645043	.	+	0	Parent=Os05t0481000-02
Chr05	irgsp1_rep	CDS	23645134	23645153	.	+	2	Parent=Os05t0481000-02
Chr05	irgsp1_rep	three_prime_UTR	23645154	23645291	.	+	.	Parent=Os05t0481000-02
Chr05	irgsp1_rep	three_prime_UTR	23645371	23645464	.	+	.	Parent=Os05t0481000-02
Chr05	irgsp1_rep	three_prime_UTR	23646342	23646681	.	+	.	Parent=Os05t0481000-02
Chr05	irgsp1_rep	mRNA	23642774	23646583	.	+	.	ID=Os05t0481000-03;Name=Os05t0481000-03;Locus_id=Os05g0481000;CGSNL Gene Symbol=SNAT1;CGSNL Gene Name=SEROTONIN N-ACETYLTRANSFERASE-1;Oryzabase Gene Symbol Synonym(s)=OsSNAT1%2C OsSNAT%2C SNAT;Oryzabase Gene Name Synonym(s)=serotonin N-acetyltransferase-1%2C serotonin N-acetyltransferase 1;Note=Similar to ATNSI (NUCLEAR SHUTTLE INTERACTING)%3B N-acetyltransferase.;Transcript_evidence=AK104449 (DDBJ%2C Best hit);ORF_evidence=NP_973950.1 (RefSeq);NIAS_FLcDNA=006-212-A12;Oryzabase=21090;TENOR=Os05t0481000-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	23642774	23642950	.	+	.	Parent=Os05t0481000-03
Chr05	irgsp1_rep	CDS	23642951	23643089	.	+	0	Parent=Os05t0481000-03
Chr05	irgsp1_rep	CDS	23643740	23643803	.	+	2	Parent=Os05t0481000-03
Chr05	irgsp1_rep	CDS	23644436	23644622	.	+	1	Parent=Os05t0481000-03
Chr05	irgsp1_rep	CDS	23644944	23645043	.	+	0	Parent=Os05t0481000-03
Chr05	irgsp1_rep	CDS	23645177	23645187	.	+	2	Parent=Os05t0481000-03
Chr05	irgsp1_rep	three_prime_UTR	23645188	23645291	.	+	.	Parent=Os05t0481000-03
Chr05	irgsp1_rep	three_prime_UTR	23645371	23645464	.	+	.	Parent=Os05t0481000-03
Chr05	irgsp1_rep	three_prime_UTR	23646342	23646583	.	+	.	Parent=Os05t0481000-03
Chr05	irgsp1_rep	mRNA	23653404	23662373	.	+	.	ID=Os05t0481100-01;Name=Os05t0481100-01;Locus_id=Os05g0481100;Note=Similar to cDNA clone:J013034D11%2C full insert sequence.;Transcript_evidence=AK111739 (DDBJ%2C Best hit);ORF_evidence=B7F5L0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023047P05;TENOR=Os05t0481100-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	23653404	23653679	.	+	.	Parent=Os05t0481100-01
Chr05	irgsp1_rep	five_prime_UTR	23654473	23654541	.	+	.	Parent=Os05t0481100-01
Chr05	irgsp1_rep	CDS	23654542	23654638	.	+	0	Parent=Os05t0481100-01
Chr05	irgsp1_rep	CDS	23655514	23655658	.	+	2	Parent=Os05t0481100-01
Chr05	irgsp1_rep	CDS	23656193	23656264	.	+	1	Parent=Os05t0481100-01
Chr05	irgsp1_rep	CDS	23656521	23656592	.	+	1	Parent=Os05t0481100-01
Chr05	irgsp1_rep	CDS	23656727	23656870	.	+	1	Parent=Os05t0481100-01
Chr05	irgsp1_rep	CDS	23656956	23657027	.	+	1	Parent=Os05t0481100-01
Chr05	irgsp1_rep	CDS	23657125	23657196	.	+	1	Parent=Os05t0481100-01
Chr05	irgsp1_rep	CDS	23657294	23657368	.	+	1	Parent=Os05t0481100-01
Chr05	irgsp1_rep	CDS	23657452	23657520	.	+	1	Parent=Os05t0481100-01
Chr05	irgsp1_rep	CDS	23657904	23657972	.	+	1	Parent=Os05t0481100-01
Chr05	irgsp1_rep	CDS	23658040	23658111	.	+	1	Parent=Os05t0481100-01
Chr05	irgsp1_rep	CDS	23658635	23658721	.	+	1	Parent=Os05t0481100-01
Chr05	irgsp1_rep	CDS	23658816	23658887	.	+	1	Parent=Os05t0481100-01
Chr05	irgsp1_rep	CDS	23659215	23659711	.	+	1	Parent=Os05t0481100-01
Chr05	irgsp1_rep	CDS	23660131	23660283	.	+	2	Parent=Os05t0481100-01
Chr05	irgsp1_rep	CDS	23660483	23660766	.	+	2	Parent=Os05t0481100-01
Chr05	irgsp1_rep	CDS	23660855	23660906	.	+	0	Parent=Os05t0481100-01
Chr05	irgsp1_rep	CDS	23661126	23661376	.	+	2	Parent=Os05t0481100-01
Chr05	irgsp1_rep	CDS	23661455	23661589	.	+	0	Parent=Os05t0481100-01
Chr05	irgsp1_rep	CDS	23661858	23662226	.	+	0	Parent=Os05t0481100-01
Chr05	irgsp1_rep	three_prime_UTR	23662227	23662373	.	+	.	Parent=Os05t0481100-01
Chr05	irgsp1_rep	mRNA	23653404	23660389	.	+	.	ID=Os05t0481100-02;Name=Os05t0481100-02;Locus_id=Os05g0481100;Note=Similar to predicted protein.;Transcript_evidence=AK120184 (DDBJ%2C Best hit);ORF_evidence=NP_195815.3 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J013034D11;TENOR=Os05t0481100-02;KEGG=Os05t0481100-02
Chr05	irgsp1_rep	five_prime_UTR	23653404	23653679	.	+	.	Parent=Os05t0481100-02
Chr05	irgsp1_rep	five_prime_UTR	23654477	23654541	.	+	.	Parent=Os05t0481100-02
Chr05	irgsp1_rep	CDS	23654542	23654638	.	+	0	Parent=Os05t0481100-02
Chr05	irgsp1_rep	CDS	23655514	23655658	.	+	2	Parent=Os05t0481100-02
Chr05	irgsp1_rep	CDS	23656193	23656264	.	+	1	Parent=Os05t0481100-02
Chr05	irgsp1_rep	CDS	23656521	23656592	.	+	1	Parent=Os05t0481100-02
Chr05	irgsp1_rep	CDS	23656727	23656870	.	+	1	Parent=Os05t0481100-02
Chr05	irgsp1_rep	CDS	23656956	23657027	.	+	1	Parent=Os05t0481100-02
Chr05	irgsp1_rep	CDS	23657125	23657196	.	+	1	Parent=Os05t0481100-02
Chr05	irgsp1_rep	CDS	23657294	23657368	.	+	1	Parent=Os05t0481100-02
Chr05	irgsp1_rep	CDS	23657452	23657520	.	+	1	Parent=Os05t0481100-02
Chr05	irgsp1_rep	CDS	23657904	23657972	.	+	1	Parent=Os05t0481100-02
Chr05	irgsp1_rep	CDS	23658040	23658111	.	+	1	Parent=Os05t0481100-02
Chr05	irgsp1_rep	CDS	23658635	23658721	.	+	1	Parent=Os05t0481100-02
Chr05	irgsp1_rep	CDS	23658816	23658887	.	+	1	Parent=Os05t0481100-02
Chr05	irgsp1_rep	CDS	23659215	23659711	.	+	1	Parent=Os05t0481100-02
Chr05	irgsp1_rep	CDS	23660131	23660297	.	+	2	Parent=Os05t0481100-02
Chr05	irgsp1_rep	three_prime_UTR	23660298	23660389	.	+	.	Parent=Os05t0481100-02
Chr05	irgsp1_rep	mRNA	23653405	23659257	.	+	.	ID=Os05t0481100-03;Name=Os05t0481100-03;Locus_id=Os05g0481100;Note=Similar to cDNA clone:J013034D11%2C full insert sequence.;Transcript_evidence=AK111636 (DDBJ%2C Best hit);ORF_evidence=B7F5L0 (UniProt);InterPro=Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J013120E04;TENOR=Os05t0481100-03;KEGG=Os05t0481100-03
Chr05	irgsp1_rep	five_prime_UTR	23653405	23653660	.	+	.	Parent=Os05t0481100-03
Chr05	irgsp1_rep	CDS	23653661	23653679	.	+	0	Parent=Os05t0481100-03
Chr05	irgsp1_rep	CDS	23655514	23655658	.	+	2	Parent=Os05t0481100-03
Chr05	irgsp1_rep	CDS	23656193	23656235	.	+	1	Parent=Os05t0481100-03
Chr05	irgsp1_rep	CDS	23656521	23656592	.	+	0	Parent=Os05t0481100-03
Chr05	irgsp1_rep	CDS	23656727	23656768	.	+	0	Parent=Os05t0481100-03
Chr05	irgsp1_rep	three_prime_UTR	23656769	23656870	.	+	.	Parent=Os05t0481100-03
Chr05	irgsp1_rep	three_prime_UTR	23656956	23657027	.	+	.	Parent=Os05t0481100-03
Chr05	irgsp1_rep	three_prime_UTR	23657125	23657196	.	+	.	Parent=Os05t0481100-03
Chr05	irgsp1_rep	three_prime_UTR	23657294	23657368	.	+	.	Parent=Os05t0481100-03
Chr05	irgsp1_rep	three_prime_UTR	23657452	23657520	.	+	.	Parent=Os05t0481100-03
Chr05	irgsp1_rep	three_prime_UTR	23657904	23657972	.	+	.	Parent=Os05t0481100-03
Chr05	irgsp1_rep	three_prime_UTR	23658040	23658111	.	+	.	Parent=Os05t0481100-03
Chr05	irgsp1_rep	three_prime_UTR	23658635	23658721	.	+	.	Parent=Os05t0481100-03
Chr05	irgsp1_rep	three_prime_UTR	23658816	23658887	.	+	.	Parent=Os05t0481100-03
Chr05	irgsp1_rep	three_prime_UTR	23659215	23659257	.	+	.	Parent=Os05t0481100-03
Chr05	irgsp1_rep	mRNA	23653965	23662350	.	+	.	ID=Os05t0481100-04;Name=Os05t0481100-04;Locus_id=Os05g0481100;Note=Similar to cDNA clone:J013034D11%2C full insert sequence.;Transcript_evidence=AK067371 (DDBJ%2C Best hit);ORF_evidence=B7F5L0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013105E06;TENOR=Os05t0481100-04;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	23653965	23654541	.	+	.	Parent=Os05t0481100-04
Chr05	irgsp1_rep	CDS	23654542	23654638	.	+	0	Parent=Os05t0481100-04
Chr05	irgsp1_rep	CDS	23655514	23655658	.	+	2	Parent=Os05t0481100-04
Chr05	irgsp1_rep	CDS	23656193	23656264	.	+	1	Parent=Os05t0481100-04
Chr05	irgsp1_rep	CDS	23656521	23656592	.	+	1	Parent=Os05t0481100-04
Chr05	irgsp1_rep	CDS	23656727	23656870	.	+	1	Parent=Os05t0481100-04
Chr05	irgsp1_rep	CDS	23656956	23657027	.	+	1	Parent=Os05t0481100-04
Chr05	irgsp1_rep	CDS	23657125	23657196	.	+	1	Parent=Os05t0481100-04
Chr05	irgsp1_rep	CDS	23657294	23657368	.	+	1	Parent=Os05t0481100-04
Chr05	irgsp1_rep	CDS	23657452	23657520	.	+	1	Parent=Os05t0481100-04
Chr05	irgsp1_rep	CDS	23657904	23657972	.	+	1	Parent=Os05t0481100-04
Chr05	irgsp1_rep	CDS	23658040	23658111	.	+	1	Parent=Os05t0481100-04
Chr05	irgsp1_rep	CDS	23658635	23658721	.	+	1	Parent=Os05t0481100-04
Chr05	irgsp1_rep	CDS	23658816	23658887	.	+	1	Parent=Os05t0481100-04
Chr05	irgsp1_rep	CDS	23659215	23659711	.	+	1	Parent=Os05t0481100-04
Chr05	irgsp1_rep	CDS	23660131	23660283	.	+	2	Parent=Os05t0481100-04
Chr05	irgsp1_rep	CDS	23660483	23660766	.	+	2	Parent=Os05t0481100-04
Chr05	irgsp1_rep	CDS	23660855	23660906	.	+	0	Parent=Os05t0481100-04
Chr05	irgsp1_rep	CDS	23661126	23661376	.	+	2	Parent=Os05t0481100-04
Chr05	irgsp1_rep	CDS	23661455	23661589	.	+	0	Parent=Os05t0481100-04
Chr05	irgsp1_rep	CDS	23661858	23662226	.	+	0	Parent=Os05t0481100-04
Chr05	irgsp1_rep	three_prime_UTR	23662227	23662350	.	+	.	Parent=Os05t0481100-04
Chr05	irgsp1_rep	mRNA	23658722	23662350	.	+	.	ID=Os05t0481100-05;Name=Os05t0481100-05;Locus_id=Os05g0481100;Note=Similar to cDNA clone:J013034D11%2C full insert sequence.;Transcript_evidence=AK099447 (DDBJ%2C Best hit);ORF_evidence=B7F5L0 (UniProt);NIAS_FLcDNA=J013021N20;TENOR=Os05t0481100-05;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	23658722	23659131	.	+	.	Parent=Os05t0481100-05
Chr05	irgsp1_rep	CDS	23659132	23659725	.	+	0	Parent=Os05t0481100-05
Chr05	irgsp1_rep	three_prime_UTR	23659726	23660283	.	+	.	Parent=Os05t0481100-05
Chr05	irgsp1_rep	three_prime_UTR	23660483	23660766	.	+	.	Parent=Os05t0481100-05
Chr05	irgsp1_rep	three_prime_UTR	23660855	23661376	.	+	.	Parent=Os05t0481100-05
Chr05	irgsp1_rep	three_prime_UTR	23661455	23661589	.	+	.	Parent=Os05t0481100-05
Chr05	irgsp1_rep	three_prime_UTR	23661858	23662350	.	+	.	Parent=Os05t0481100-05
Chr05	irgsp1_rep	mRNA	23659653	23662368	.	+	.	ID=Os05t0481100-06;Name=Os05t0481100-06;Locus_id=Os05g0481100;Note=Similar to cDNA clone:J013021N20%2C full insert sequence.;Transcript_evidence=AK068900 (DDBJ%2C Best hit);ORF_evidence=B7EP37 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023001A04;TENOR=Os05t0481100-06;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	23659653	23659711	.	+	.	Parent=Os05t0481100-06
Chr05	irgsp1_rep	five_prime_UTR	23660131	23660240	.	+	.	Parent=Os05t0481100-06
Chr05	irgsp1_rep	CDS	23660241	23660283	.	+	0	Parent=Os05t0481100-06
Chr05	irgsp1_rep	CDS	23660483	23660766	.	+	2	Parent=Os05t0481100-06
Chr05	irgsp1_rep	CDS	23660855	23660906	.	+	0	Parent=Os05t0481100-06
Chr05	irgsp1_rep	CDS	23661126	23661376	.	+	2	Parent=Os05t0481100-06
Chr05	irgsp1_rep	CDS	23661455	23661589	.	+	0	Parent=Os05t0481100-06
Chr05	irgsp1_rep	CDS	23661858	23662226	.	+	0	Parent=Os05t0481100-06
Chr05	irgsp1_rep	three_prime_UTR	23662227	23662368	.	+	.	Parent=Os05t0481100-06
Chr05	irgsp1_rep	mRNA	23660500	23661591	.	-	.	ID=Os05t0481250-00;Name=Os05t0481250-00;Locus_id=Os05g0481250;Note=Non-protein coding transcript.;Transcript_evidence=AK368632 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0481250-00
Chr05	irgsp1_rep	exon	23661447	23661591	.	-	.	Parent=Os05t0481250-00
Chr05	irgsp1_rep	exon	23661141	23661374	.	-	.	Parent=Os05t0481250-00
Chr05	irgsp1_rep	exon	23660853	23660918	.	-	.	Parent=Os05t0481250-00
Chr05	irgsp1_rep	exon	23660500	23660772	.	-	.	Parent=Os05t0481250-00
Chr05	irgsp1_rep	mRNA	23662349	23666681	.	-	.	ID=Os05t0481400-01;Name=Os05t0481400-01;Locus_id=Os05g0481400;Oryzabase Gene Name Synonym(s)=ABIVP1 transcription factor;Note=Transcriptional factor B3 family protein.;Transcript_evidence=AK068705 (DDBJ%2C Best hit);ORF_evidence=F1DKB9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=J013160D16;Oryzabase=16199;Expression=AK068705;TENOR=Os05t0481400-01;KEGG=Os05t0481400-01
Chr05	irgsp1_rep	five_prime_UTR	23666569	23666681	.	-	.	Parent=Os05t0481400-01
Chr05	irgsp1_rep	CDS	23666479	23666568	.	-	0	Parent=Os05t0481400-01
Chr05	irgsp1_rep	CDS	23666151	23666207	.	-	0	Parent=Os05t0481400-01
Chr05	irgsp1_rep	CDS	23665968	23666069	.	-	0	Parent=Os05t0481400-01
Chr05	irgsp1_rep	CDS	23665493	23665527	.	-	0	Parent=Os05t0481400-01
Chr05	irgsp1_rep	CDS	23665230	23665407	.	-	1	Parent=Os05t0481400-01
Chr05	irgsp1_rep	CDS	23664928	23665134	.	-	0	Parent=Os05t0481400-01
Chr05	irgsp1_rep	CDS	23662755	23662925	.	-	0	Parent=Os05t0481400-01
Chr05	irgsp1_rep	three_prime_UTR	23662349	23662754	.	-	.	Parent=Os05t0481400-01
Chr05	irgsp1_rep	mRNA	23672800	23677294	.	-	.	ID=Os05t0481500-01;Name=Os05t0481500-01;Locus_id=Os05g0481500;Note=K Homology domain containing protein.;Transcript_evidence=AK072560 (DDBJ%2C Best hit);ORF_evidence=NP_001150991.1 (RefSeq);GO=Molecular Function: RNA binding (GO:0003723);InterPro=K Homology (IPR004087),K Homology%2C type 1%2C subgroup (IPR018111);NIAS_FLcDNA=J023133B04;Expression=AK072560;TENOR=Os05t0481500-01;KEGG=Os05t0481500-01
Chr05	irgsp1_rep	five_prime_UTR	23677005	23677294	.	-	.	Parent=Os05t0481500-01
Chr05	irgsp1_rep	CDS	23676907	23677004	.	-	0	Parent=Os05t0481500-01
Chr05	irgsp1_rep	CDS	23676605	23676693	.	-	1	Parent=Os05t0481500-01
Chr05	irgsp1_rep	CDS	23676154	23676305	.	-	2	Parent=Os05t0481500-01
Chr05	irgsp1_rep	CDS	23674103	23674213	.	-	0	Parent=Os05t0481500-01
Chr05	irgsp1_rep	CDS	23673917	23674033	.	-	0	Parent=Os05t0481500-01
Chr05	irgsp1_rep	CDS	23673627	23673770	.	-	0	Parent=Os05t0481500-01
Chr05	irgsp1_rep	CDS	23673172	23673309	.	-	0	Parent=Os05t0481500-01
Chr05	irgsp1_rep	three_prime_UTR	23672800	23673171	.	-	.	Parent=Os05t0481500-01
Chr05	irgsp1_rep	mRNA	23672914	23677150	.	-	.	ID=Os05t0481500-02;Name=Os05t0481500-02;Locus_id=Os05g0481500;Note=K Homology domain containing protein.;Transcript_evidence=AK104046 (DDBJ%2C Best hit);ORF_evidence=NP_001150991.1 (RefSeq);GO=Molecular Function: RNA binding (GO:0003723);InterPro=K Homology (IPR004087),K Homology%2C type 1%2C subgroup (IPR018111);NIAS_FLcDNA=001-022-G06;Expression=AK104046;TENOR=Os05t0481500-02;KEGG=Os05t0481500-02
Chr05	irgsp1_rep	five_prime_UTR	23677005	23677150	.	-	.	Parent=Os05t0481500-02
Chr05	irgsp1_rep	CDS	23676907	23677004	.	-	0	Parent=Os05t0481500-02
Chr05	irgsp1_rep	CDS	23676605	23676693	.	-	1	Parent=Os05t0481500-02
Chr05	irgsp1_rep	CDS	23676154	23676305	.	-	2	Parent=Os05t0481500-02
Chr05	irgsp1_rep	CDS	23674103	23674213	.	-	0	Parent=Os05t0481500-02
Chr05	irgsp1_rep	CDS	23673917	23674033	.	-	0	Parent=Os05t0481500-02
Chr05	irgsp1_rep	CDS	23673627	23673770	.	-	0	Parent=Os05t0481500-02
Chr05	irgsp1_rep	CDS	23673172	23673309	.	-	0	Parent=Os05t0481500-02
Chr05	irgsp1_rep	three_prime_UTR	23672914	23673171	.	-	.	Parent=Os05t0481500-02
Chr05	irgsp1_rep	mRNA	23685733	23688065	.	+	.	ID=Os05t0481600-01;Name=Os05t0481600-01;Locus_id=Os05g0481600;Note=Conserved hypothetical protein.;Transcript_evidence=AK121540 (DDBJ%2C Best hit),AK063820 (DDBJ%2C Best hit);ORF_evidence=A2Y5U1 (UniProt);NIAS_FLcDNA=J033031M01,001-122-A02;Expression=AK121540;TENOR=Os05t0481600-01;KEGG=Os05t0481600-01 (EC:1.6.5.3%2C EC:1.6.99.3)
Chr05	irgsp1_rep	five_prime_UTR	23685733	23685860	.	+	.	Parent=Os05t0481600-01
Chr05	irgsp1_rep	CDS	23685861	23685971	.	+	0	Parent=Os05t0481600-01
Chr05	irgsp1_rep	CDS	23686093	23686182	.	+	0	Parent=Os05t0481600-01
Chr05	irgsp1_rep	three_prime_UTR	23687860	23688065	.	+	.	Parent=Os05t0481600-01
Chr05	irgsp1_rep	mRNA	23689186	23690983	.	-	.	ID=Os05t0481700-00;Name=Os05t0481700-00;Locus_id=Os05g0481700;Oryzabase Gene Symbol Synonym(s)=OsSTA153;Note=Hypothetical conserved gene.;Transcript_evidence=tplb0007a06 (Wheat FLcDNA);ORF_evidence=B9FJW5 (UniProt);Oryzabase=19441;TENOR=Os05t0481700-00;KEGG=Os05t0481700-00
Chr05	irgsp1_rep	five_prime_UTR	23690971	23690983	.	-	.	Parent=Os05t0481700-00
Chr05	irgsp1_rep	CDS	23690725	23690970	.	-	0	Parent=Os05t0481700-00
Chr05	irgsp1_rep	three_prime_UTR	23689980	23690724	.	-	.	Parent=Os05t0481700-00
Chr05	irgsp1_rep	three_prime_UTR	23689725	23689877	.	-	.	Parent=Os05t0481700-00
Chr05	irgsp1_rep	three_prime_UTR	23689186	23689536	.	-	.	Parent=Os05t0481700-00
Chr05	irgsp1_rep	mRNA	23692939	23695070	.	+	.	ID=Os05t0481800-01;Name=Os05t0481800-01;Locus_id=Os05g0481800;Note=Hypothetical conserved gene.;Transcript_evidence=AK110987 (DDBJ%2C Best hit);ORF_evidence=Q5KQI1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-174-D06;Expression=AK110987;TENOR=Os05t0481800-01;KEGG=Os05t0481800-01
Chr05	irgsp1_rep	five_prime_UTR	23692939	23693088	.	+	.	Parent=Os05t0481800-01
Chr05	irgsp1_rep	CDS	23693089	23693184	.	+	0	Parent=Os05t0481800-01
Chr05	irgsp1_rep	CDS	23693582	23694655	.	+	0	Parent=Os05t0481800-01
Chr05	irgsp1_rep	three_prime_UTR	23694656	23695070	.	+	.	Parent=Os05t0481800-01
Chr05	irgsp1_rep	mRNA	23692950	23697385	.	+	.	ID=Os05t0481800-02;Name=Os05t0481800-02;Locus_id=Os05g0481800;Note=Hypothetical conserved gene.;Transcript_evidence=AK100952 (DDBJ%2C Best hit);ORF_evidence=Q5KQI1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J023139M01;TENOR=Os05t0481800-02;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	23692950	23693088	.	+	.	Parent=Os05t0481800-02
Chr05	irgsp1_rep	CDS	23693089	23693184	.	+	0	Parent=Os05t0481800-02
Chr05	irgsp1_rep	CDS	23693582	23694655	.	+	0	Parent=Os05t0481800-02
Chr05	irgsp1_rep	three_prime_UTR	23694656	23695735	.	+	.	Parent=Os05t0481800-02
Chr05	irgsp1_rep	three_prime_UTR	23696689	23696809	.	+	.	Parent=Os05t0481800-02
Chr05	irgsp1_rep	three_prime_UTR	23696938	23697385	.	+	.	Parent=Os05t0481800-02
Chr05	irgsp1_rep	mRNA	23697744	23700670	.	-	.	ID=Os05t0481900-01;Name=Os05t0481900-01;Locus_id=Os05g0481900;Oryzabase Gene Symbol Synonym(s)=OsPILS6b%2C PILS6b;Oryzabase Gene Name Synonym(s)=PIN likes 6b;Note=Auxin efflux carrier domain containing protein.;Transcript_evidence=AK119626 (DDBJ%2C Best hit);ORF_evidence=XP_002323690.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Auxin efflux carrier (IPR004776);NIAS_FLcDNA=002-117-H11;Oryzabase=19849;Expression=AK119626;TENOR=Os05t0481900-01;KEGG=Os05t0481900-01
Chr05	irgsp1_rep	five_prime_UTR	23700508	23700670	.	-	.	Parent=Os05t0481900-01
Chr05	irgsp1_rep	CDS	23700307	23700507	.	-	0	Parent=Os05t0481900-01
Chr05	irgsp1_rep	CDS	23700073	23700152	.	-	0	Parent=Os05t0481900-01
Chr05	irgsp1_rep	CDS	23699825	23699949	.	-	1	Parent=Os05t0481900-01
Chr05	irgsp1_rep	CDS	23699612	23699733	.	-	2	Parent=Os05t0481900-01
Chr05	irgsp1_rep	CDS	23699276	23699515	.	-	0	Parent=Os05t0481900-01
Chr05	irgsp1_rep	CDS	23699087	23699161	.	-	0	Parent=Os05t0481900-01
Chr05	irgsp1_rep	CDS	23698885	23698985	.	-	0	Parent=Os05t0481900-01
Chr05	irgsp1_rep	CDS	23698709	23698761	.	-	1	Parent=Os05t0481900-01
Chr05	irgsp1_rep	CDS	23698383	23698577	.	-	2	Parent=Os05t0481900-01
Chr05	irgsp1_rep	CDS	23698158	23698279	.	-	2	Parent=Os05t0481900-01
Chr05	irgsp1_rep	three_prime_UTR	23697744	23698004	.	-	.	Parent=Os05t0481900-01
Chr05	irgsp1_rep	mRNA	23697741	23700634	.	-	.	ID=Os05t0481900-02;Name=Os05t0481900-02;Locus_id=Os05g0481900;Oryzabase Gene Symbol Synonym(s)=OsPILS6b%2C PILS6b;Oryzabase Gene Name Synonym(s)=PIN likes 6b;Note=Auxin efflux carrier domain containing protein.;Transcript_evidence=AK106744 (DDBJ%2C Best hit);ORF_evidence=XP_002323690.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Auxin efflux carrier (IPR004776);NIAS_FLcDNA=002-115-B08;Oryzabase=19849;TENOR=Os05t0481900-02
Chr05	irgsp1_rep	five_prime_UTR	23700508	23700634	.	-	.	Parent=Os05t0481900-02
Chr05	irgsp1_rep	CDS	23700307	23700507	.	-	0	Parent=Os05t0481900-02
Chr05	irgsp1_rep	CDS	23700073	23700152	.	-	0	Parent=Os05t0481900-02
Chr05	irgsp1_rep	CDS	23699825	23699949	.	-	1	Parent=Os05t0481900-02
Chr05	irgsp1_rep	CDS	23699612	23699733	.	-	2	Parent=Os05t0481900-02
Chr05	irgsp1_rep	CDS	23699276	23699515	.	-	0	Parent=Os05t0481900-02
Chr05	irgsp1_rep	CDS	23699087	23699161	.	-	0	Parent=Os05t0481900-02
Chr05	irgsp1_rep	CDS	23698885	23698985	.	-	0	Parent=Os05t0481900-02
Chr05	irgsp1_rep	CDS	23698709	23698761	.	-	1	Parent=Os05t0481900-02
Chr05	irgsp1_rep	CDS	23698383	23698577	.	-	2	Parent=Os05t0481900-02
Chr05	irgsp1_rep	CDS	23698158	23698279	.	-	2	Parent=Os05t0481900-02
Chr05	irgsp1_rep	three_prime_UTR	23697741	23698004	.	-	.	Parent=Os05t0481900-02
Chr05	irgsp1_rep	mRNA	23704035	23706266	.	+	.	ID=Os05t0482050-01;Name=Os05t0482050-01;Locus_id=Os05g0482050;Note=Non-protein coding transcript.;Transcript_evidence=AK288919 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090081K24;TENOR=Os05t0482050-01
Chr05	irgsp1_rep	exon	23704035	23706266	.	+	.	Parent=Os05t0482050-01
Chr05	irgsp1_rep	mRNA	23728568	23738372	.	+	.	ID=Os05t0482400-01;Name=Os05t0482400-01;Locus_id=Os05g0482400;RAP-DB Gene Symbol Synonym(s)=EUI1%2C eui1%2C GA16%2C17ox%2C CYP714D1%2C EUI%2C CYP714D1/EUI;RAP-DB Gene Name Synonym(s)=ELONGATED UPPERMOST INTERNODE 1%2C elongated uppermost internode%2C elongated uppermost internode-1%2C Elongation of Upper most Internode;CGSNL Gene Symbol=EUI1;CGSNL Gene Name=ELONGATED UPPERMOST INTERNODE 1;Oryzabase Gene Symbol Synonym(s)=eui1%2C GA16%2C 17ox%2C CYP714D1%2C EUI%2C CYP714D1/EUI%2C OsEUI;Oryzabase Gene Name Synonym(s)=elongated uppermost internode%2C elongated uppermost internode-1%2C Elongation of Upper most Internode%2C ELONGATED UPPERMOST INTERNODE1%2C dwarf Eui1;Note=CytoChrome P450 monooxygenase%2C Gibberellin (GA)-deactivating enzyme%2C Modulation of internode elongation;Transcript_evidence=AY987039,AK109526;ORF_evidence=Q5KQH7;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=002-115-G10;Manual Curation=April 4%2C 2016;Literature_PMID=16399803,16306061;Oryzabase=647;Expression=AK109526;TENOR=Os05t0482400-01;KEGG=Os05t0482400-01 (EC:1.14.15.3)
Chr05	irgsp1_rep	five_prime_UTR	23728568	23728677	.	+	.	Parent=Os05t0482400-01
Chr05	irgsp1_rep	CDS	23728678	23729032	.	+	0	Parent=Os05t0482400-01
Chr05	irgsp1_rep	CDS	23736907	23738285	.	+	2	Parent=Os05t0482400-01
Chr05	irgsp1_rep	three_prime_UTR	23738286	23738372	.	+	.	Parent=Os05t0482400-01
Chr05	irgsp1_rep	mRNA	23739115	23739799	.	+	.	ID=Os05t0482501-00;Name=Os05t0482501-00;Locus_id=Os05g0482501;Note=Hypothetical conserved gene.;Transcript_evidence=tplb0002a17 (Wheat FLcDNA);ORF_evidence=A2Y5U9 (UniProt);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864),Twin-arginine translocation pathway%2C signal sequence (IPR006311);TENOR=Os05t0482501-00;KEGG=Os05t0482501-00
Chr05	irgsp1_rep	five_prime_UTR	23739115	23739163	.	+	.	Parent=Os05t0482501-00
Chr05	irgsp1_rep	CDS	23739164	23739799	.	+	0	Parent=Os05t0482501-00
Chr05	irgsp1_rep	mRNA	23743472	23747589	.	+	.	ID=Os05t0482600-01;Name=Os05t0482600-01;Locus_id=Os05g0482600;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK120343 (DDBJ%2C Best hit);ORF_evidence=B8AZB7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40/YVTN repeat-like-containing domain (IPR015943);NIAS_FLcDNA=J013061L21;Expression=AK120343;TENOR=Os05t0482600-01;KEGG=Os05t0482600-01
Chr05	irgsp1_rep	five_prime_UTR	23743472	23743703	.	+	.	Parent=Os05t0482600-01
Chr05	irgsp1_rep	CDS	23743704	23743895	.	+	0	Parent=Os05t0482600-01
Chr05	irgsp1_rep	CDS	23744843	23744987	.	+	0	Parent=Os05t0482600-01
Chr05	irgsp1_rep	CDS	23745059	23745209	.	+	2	Parent=Os05t0482600-01
Chr05	irgsp1_rep	CDS	23745292	23745417	.	+	1	Parent=Os05t0482600-01
Chr05	irgsp1_rep	CDS	23745496	23745576	.	+	1	Parent=Os05t0482600-01
Chr05	irgsp1_rep	CDS	23745949	23746141	.	+	1	Parent=Os05t0482600-01
Chr05	irgsp1_rep	CDS	23746233	23746503	.	+	0	Parent=Os05t0482600-01
Chr05	irgsp1_rep	CDS	23747050	23747258	.	+	2	Parent=Os05t0482600-01
Chr05	irgsp1_rep	three_prime_UTR	23747259	23747589	.	+	.	Parent=Os05t0482600-01
Chr05	irgsp1_rep	mRNA	23743580	23747576	.	-	.	ID=Os05t0482650-00;Name=Os05t0482650-00;Locus_id=Os05g0482650;Note=Hypothetical protein.;Transcript_evidence=tplb0051f06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0482650-00
Chr05	irgsp1_rep	five_prime_UTR	23747049	23747576	.	-	.	Parent=Os05t0482650-00
Chr05	irgsp1_rep	five_prime_UTR	23746221	23746502	.	-	.	Parent=Os05t0482650-00
Chr05	irgsp1_rep	five_prime_UTR	23745946	23746135	.	-	.	Parent=Os05t0482650-00
Chr05	irgsp1_rep	five_prime_UTR	23745503	23745573	.	-	.	Parent=Os05t0482650-00
Chr05	irgsp1_rep	five_prime_UTR	23745300	23745424	.	-	.	Parent=Os05t0482650-00
Chr05	irgsp1_rep	five_prime_UTR	23745041	23745214	.	-	.	Parent=Os05t0482650-00
Chr05	irgsp1_rep	five_prime_UTR	23744861	23744972	.	-	.	Parent=Os05t0482650-00
Chr05	irgsp1_rep	CDS	23744837	23744860	.	-	0	Parent=Os05t0482650-00
Chr05	irgsp1_rep	CDS	23743580	23743889	.	-	0	Parent=Os05t0482650-00
Chr05	irgsp1_rep	mRNA	23748753	23753405	.	-	.	ID=Os05t0482700-01;Name=Os05t0482700-01;Locus_id=Os05g0482700;Note=Similar to 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) (Phosphoglyceromutase) (BPG-independent PGAM) (PGAM-I).;Transcript_evidence=AK065541 (DDBJ%2C Best hit);ORF_evidence=B6TGG2 (UniProt);GO=Biological Process: glucose catabolic process (GO:0006007),Biological Process: metabolic process (GO:0008152),Cellular Component: cytoplasm (GO:0005737),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphoglycerate mutase activity (GO:0004619),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: metal ion binding (GO:0046872);InterPro=Phosphoglycerate mutase%2C 2%2C3-bisphosphoglycerate-independent (IPR005995),Metalloenzyme (IPR006124),BPG-independent PGAM%2C N-terminal (IPR011258),Alkaline phosphatase-like%2C alpha/beta/alpha (IPR017849),Alkaline-phosphatase-like%2C core domain (IPR017850);NIAS_FLcDNA=J013029A18;Expression=AK065541;TENOR=Os05t0482700-01;KEGG=Os05t0482700-01 (EC:5.4.2.1)
Chr05	irgsp1_rep	five_prime_UTR	23753328	23753405	.	-	.	Parent=Os05t0482700-01
Chr05	irgsp1_rep	five_prime_UTR	23752488	23752499	.	-	.	Parent=Os05t0482700-01
Chr05	irgsp1_rep	CDS	23752326	23752487	.	-	0	Parent=Os05t0482700-01
Chr05	irgsp1_rep	CDS	23751717	23751844	.	-	0	Parent=Os05t0482700-01
Chr05	irgsp1_rep	CDS	23750958	23751108	.	-	1	Parent=Os05t0482700-01
Chr05	irgsp1_rep	CDS	23750628	23750831	.	-	0	Parent=Os05t0482700-01
Chr05	irgsp1_rep	CDS	23750053	23750477	.	-	0	Parent=Os05t0482700-01
Chr05	irgsp1_rep	CDS	23749619	23749811	.	-	1	Parent=Os05t0482700-01
Chr05	irgsp1_rep	CDS	23749441	23749536	.	-	0	Parent=Os05t0482700-01
Chr05	irgsp1_rep	CDS	23749181	23749336	.	-	0	Parent=Os05t0482700-01
Chr05	irgsp1_rep	CDS	23748899	23749063	.	-	0	Parent=Os05t0482700-01
Chr05	irgsp1_rep	three_prime_UTR	23748753	23748898	.	-	.	Parent=Os05t0482700-01
Chr05	irgsp1_rep	mRNA	23798402	23799113	.	-	.	ID=Os05t0483801-00;Name=Os05t0483801-00;Locus_id=Os05g0483801;Note=Similar to Cyclin-dependent kinase B2-1.;Transcript_evidence=ab initio prediction;ORF_evidence=Q0J4I1 (UniProt);TENOR=Os05t0483801-00;KEGG=Os05t0483801-00 (EC:2.7.11.22)
Chr05	irgsp1_rep	CDS	23799023	23799113	.	-	0	Parent=Os05t0483801-00
Chr05	irgsp1_rep	CDS	23798824	23798898	.	-	2	Parent=Os05t0483801-00
Chr05	irgsp1_rep	CDS	23798665	23798734	.	-	2	Parent=Os05t0483801-00
Chr05	irgsp1_rep	CDS	23798402	23798558	.	-	1	Parent=Os05t0483801-00
Chr05	irgsp1_rep	mRNA	23801399	23803149	.	-	.	ID=Os05t0484000-01;Name=Os05t0484000-01;Locus_id=Os05g0484000;Note=Conserved hypothetical protein.;Transcript_evidence=AK106829 (DDBJ%2C Best hit);ORF_evidence=B8B3U0 (UniProt);NIAS_FLcDNA=002-116-F06;TENOR=Os05t0484000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	23802186	23803149	.	-	.	Parent=Os05t0484000-01
Chr05	irgsp1_rep	CDS	23801664	23802185	.	-	0	Parent=Os05t0484000-01
Chr05	irgsp1_rep	three_prime_UTR	23801399	23801663	.	-	.	Parent=Os05t0484000-01
Chr05	irgsp1_rep	mRNA	23820381	23822092	.	+	.	ID=Os05t0484700-01;Name=Os05t0484700-01;Locus_id=Os05g0484700;Note=Conserved hypothetical protein.;Transcript_evidence=AK111182 (DDBJ%2C Best hit);ORF_evidence=B8B3U0 (UniProt);NIAS_FLcDNA=002-177-G04;TENOR=Os05t0484700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	23820381	23821314	.	+	.	Parent=Os05t0484700-01
Chr05	irgsp1_rep	CDS	23821315	23821401	.	+	0	Parent=Os05t0484700-01
Chr05	irgsp1_rep	CDS	23821447	23821836	.	+	0	Parent=Os05t0484700-01
Chr05	irgsp1_rep	three_prime_UTR	23821837	23822092	.	+	.	Parent=Os05t0484700-01
Chr05	irgsp1_rep	mRNA	23825696	23826622	.	-	.	ID=Os05t0484800-01;Name=Os05t0484800-01;Locus_id=Os05g0484800;Note=Protein of unknown function DUF567 family protein.;Transcript_evidence=AK071834 (DDBJ%2C Best hit);ORF_evidence=NP_001147495.1 (RefSeq);InterPro=Tubby%2C C-terminal (IPR000007),Protein of unknown function DUF567 (IPR007612);NIAS_FLcDNA=J023118G11;Expression=AK071834;TENOR=Os05t0484800-01;KEGG=Os05t0484800-01
Chr05	irgsp1_rep	five_prime_UTR	23826557	23826622	.	-	.	Parent=Os05t0484800-01
Chr05	irgsp1_rep	CDS	23825852	23826556	.	-	0	Parent=Os05t0484800-01
Chr05	irgsp1_rep	three_prime_UTR	23825696	23825851	.	-	.	Parent=Os05t0484800-01
Chr05	irgsp1_rep	mRNA	23839410	23842483	.	-	.	ID=Os05t0485000-01;Name=Os05t0485000-01;Locus_id=Os05g0485000;CGSNL Gene Symbol=CHX16;CGSNL Gene Name=CATION/H+ EXCHANGER  16;Oryzabase Gene Symbol Synonym(s)=OsCHX16;Oryzabase Gene Name Synonym(s)=cation/H+ exchanger  16;Note=Cation/H+ exchanger domain containing protein.;Transcript_evidence=AK106318 (DDBJ%2C Best hit);ORF_evidence=NP_178985.1 (RefSeq);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: solute:hydrogen antiporter activity (GO:0015299);InterPro=Cation/H+ exchanger (IPR006153);NIAS_FLcDNA=002-101-E03;Oryzabase=22374;Expression=AK106318;TENOR=Os05t0485000-01;KEGG=Os05t0485000-01
Chr05	irgsp1_rep	five_prime_UTR	23842431	23842483	.	-	.	Parent=Os05t0485000-01
Chr05	irgsp1_rep	CDS	23842128	23842430	.	-	0	Parent=Os05t0485000-01
Chr05	irgsp1_rep	CDS	23839709	23842030	.	-	0	Parent=Os05t0485000-01
Chr05	irgsp1_rep	three_prime_UTR	23839410	23839708	.	-	.	Parent=Os05t0485000-01
Chr05	irgsp1_rep	mRNA	23865753	23869389	.	+	.	ID=Os05t0485300-01;Name=Os05t0485300-01;Locus_id=Os05g0485300;Note=TRAM%2C LAG1 and CLN8 homology domain containing protein.;Transcript_evidence=AK102064 (DDBJ%2C Best hit);ORF_evidence=A2Y5W7 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=TRAM/LAG1/CLN8 homology domain (IPR006634);NIAS_FLcDNA=J033082E20;Expression=AK102064;TENOR=Os05t0485300-01;KEGG=Os05t0485300-01
Chr05	irgsp1_rep	five_prime_UTR	23865753	23866027	.	+	.	Parent=Os05t0485300-01
Chr05	irgsp1_rep	CDS	23866028	23866105	.	+	0	Parent=Os05t0485300-01
Chr05	irgsp1_rep	CDS	23867589	23867677	.	+	0	Parent=Os05t0485300-01
Chr05	irgsp1_rep	CDS	23867860	23867998	.	+	1	Parent=Os05t0485300-01
Chr05	irgsp1_rep	CDS	23868090	23868164	.	+	0	Parent=Os05t0485300-01
Chr05	irgsp1_rep	CDS	23868260	23868381	.	+	0	Parent=Os05t0485300-01
Chr05	irgsp1_rep	CDS	23868478	23868553	.	+	1	Parent=Os05t0485300-01
Chr05	irgsp1_rep	CDS	23868977	23869036	.	+	0	Parent=Os05t0485300-01
Chr05	irgsp1_rep	CDS	23869130	23869282	.	+	0	Parent=Os05t0485300-01
Chr05	irgsp1_rep	three_prime_UTR	23869283	23869389	.	+	.	Parent=Os05t0485300-01
Chr05	irgsp1_rep	mRNA	23871495	23873014	.	+	.	ID=Os05t0485400-00;Name=Os05t0485400-00;Locus_id=Os05g0485400;CGSNL Gene Symbol=GRAS28;CGSNL Gene Name=GRAS PROTEIN 28;Oryzabase Gene Symbol Synonym(s)=OsGRAS-28%2C OsGRAS28%2C GRAS-28;Oryzabase Gene Name Synonym(s)=GRAS protein 28;Note=Transcription factor GRAS domain containing protein.;Transcript_evidence=tplb0009g08 (Wheat FLcDNA);ORF_evidence=Q75J73 (UniProt);InterPro=Transcription factor GRAS (IPR005202);Oryzabase=22794;TENOR=Os05t0485400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	23871495	23872997	.	+	0	Parent=Os05t0485400-00
Chr05	irgsp1_rep	three_prime_UTR	23872998	23873014	.	+	.	Parent=Os05t0485400-00
Chr05	irgsp1_rep	mRNA	23873730	23874280	.	-	.	ID=Os05t0485500-01;Name=Os05t0485500-01;Locus_id=Os05g0485500;CGSNL Gene Symbol=GAUT17;CGSNL Gene Name=GALACTURONOSYLTRANSFERASE 17;Oryzabase Gene Symbol Synonym(s)=UGT%2C OsGAUT17;Oryzabase Gene Name Synonym(s)=galacturonosyltransferase 17;Note=Similar to GAUT7 (GALACTURONOSYLTRANSFERASE 7)%3B polygalacturonate 4-alpha-galacturonosyltransferase/ transferase%2C transferring glycosyl groups.;Transcript_evidence=AK062452 (DDBJ%2C Best hit);ORF_evidence=NP_565893.1 (RefSeq);NIAS_FLcDNA=001-103-C05;Oryzabase=18243,23258;Expression=AK062452;TENOR=Os05t0485500-01;KEGG=Os05t0485500-01
Chr05	irgsp1_rep	five_prime_UTR	23874279	23874280	.	-	.	Parent=Os05t0485500-01
Chr05	irgsp1_rep	CDS	23874177	23874278	.	-	0	Parent=Os05t0485500-01
Chr05	irgsp1_rep	three_prime_UTR	23873730	23874176	.	-	.	Parent=Os05t0485500-01
Chr05	irgsp1_rep	mRNA	23883271	23885939	.	-	.	ID=Os05t0485800-00;Name=Os05t0485800-00;Locus_id=Os05g0485800;Note=Similar to pollen-specific protein NTP303.;Transcript_evidence=BT068158 (DDBJ);ORF_evidence=NP_001151961.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: copper ion binding (GO:0005507),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Multicopper oxidase%2C type 1 (IPR001117),Cupredoxin (IPR008972),Multicopper oxidase%2C type 3 (IPR011707);TENOR=Os05t0485800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	23885138	23885939	.	-	0	Parent=Os05t0485800-00
Chr05	irgsp1_rep	CDS	23884573	23885078	.	-	2	Parent=Os05t0485800-00
Chr05	irgsp1_rep	CDS	23883271	23884008	.	-	0	Parent=Os05t0485800-00
Chr05	irgsp1_rep	mRNA	23883737	23885941	.	+	.	ID=Os05t0485850-00;Name=Os05t0485850-00;Locus_id=Os05g0485850;Note=Hypothetical protein.;Transcript_evidence=tplb0021n10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0485850-00
Chr05	irgsp1_rep	five_prime_UTR	23883737	23884019	.	+	.	Parent=Os05t0485850-00
Chr05	irgsp1_rep	five_prime_UTR	23884588	23885172	.	+	.	Parent=Os05t0485850-00
Chr05	irgsp1_rep	CDS	23885173	23885514	.	+	0	Parent=Os05t0485850-00
Chr05	irgsp1_rep	three_prime_UTR	23885515	23885941	.	+	.	Parent=Os05t0485850-00
Chr05	irgsp1_rep	mRNA	23899488	23905448	.	-	.	ID=Os05t0486100-01;Name=Os05t0486100-01;Locus_id=Os05g0486100;RAP-DB Gene Symbol Synonym(s)=OsRPK1;RAP-DB Gene Name Synonym(s)=leucine-rich repeat receptor-like kinase 1;Oryzabase Gene Symbol Synonym(s)=OsRPK1;Oryzabase Gene Name Synonym(s)=leucine-rich repeat receptor-like kinase 1;Note=Leucine-rich repeat receptor-like kinase%2C Mn<sup>2+</sup>/Mg<sup>2+</sup>-dependent serine/threonine (Ser/Thr) kinase%2C Ca<sup>2+</sup>-independent Ser/Thr kinase%2C Negative regulation of polar auxin transport%2C Root development;Transcript_evidence=AK119823;ORF_evidence=Q0DH82;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=Leucine-rich repeat-containing N-terminal%2C plant-type (IPR013210),Leucine-rich repeat domain%2C L domain-like (IPR032675),Concanavalin A-like lectin/glucanase domain (IPR013320),Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine-threonine/tyrosine-protein kinase catalytic domain (IPR001245),Leucine-rich repeat (IPR001611),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=002-177-D06;Manual Curation=January 19%2C 2017;Literature_PMID=24412327;Oryzabase=16707;Expression=AK119823;TENOR=Os05t0486100-01;KEGG=Os05t0486100-01
Chr05	irgsp1_rep	five_prime_UTR	23905330	23905448	.	-	.	Parent=Os05t0486100-01
Chr05	irgsp1_rep	CDS	23905242	23905329	.	-	0	Parent=Os05t0486100-01
Chr05	irgsp1_rep	CDS	23904972	23905092	.	-	2	Parent=Os05t0486100-01
Chr05	irgsp1_rep	CDS	23904806	23904877	.	-	1	Parent=Os05t0486100-01
Chr05	irgsp1_rep	CDS	23904146	23904220	.	-	1	Parent=Os05t0486100-01
Chr05	irgsp1_rep	CDS	23903977	23904048	.	-	1	Parent=Os05t0486100-01
Chr05	irgsp1_rep	CDS	23903717	23903878	.	-	1	Parent=Os05t0486100-01
Chr05	irgsp1_rep	CDS	23903539	23903610	.	-	1	Parent=Os05t0486100-01
Chr05	irgsp1_rep	CDS	23903387	23903458	.	-	1	Parent=Os05t0486100-01
Chr05	irgsp1_rep	CDS	23903216	23903287	.	-	1	Parent=Os05t0486100-01
Chr05	irgsp1_rep	CDS	23903073	23903141	.	-	1	Parent=Os05t0486100-01
Chr05	irgsp1_rep	CDS	23902914	23902988	.	-	1	Parent=Os05t0486100-01
Chr05	irgsp1_rep	CDS	23902752	23902823	.	-	1	Parent=Os05t0486100-01
Chr05	irgsp1_rep	CDS	23902535	23902666	.	-	1	Parent=Os05t0486100-01
Chr05	irgsp1_rep	CDS	23901948	23902426	.	-	1	Parent=Os05t0486100-01
Chr05	irgsp1_rep	CDS	23901507	23901665	.	-	2	Parent=Os05t0486100-01
Chr05	irgsp1_rep	CDS	23900971	23901330	.	-	2	Parent=Os05t0486100-01
Chr05	irgsp1_rep	CDS	23900614	23900846	.	-	2	Parent=Os05t0486100-01
Chr05	irgsp1_rep	CDS	23899636	23900160	.	-	0	Parent=Os05t0486100-01
Chr05	irgsp1_rep	three_prime_UTR	23899488	23899635	.	-	.	Parent=Os05t0486100-01
Chr05	irgsp1_rep	mRNA	23899480	23903878	.	-	.	ID=Os05t0486100-02;Name=Os05t0486100-02;Locus_id=Os05g0486100;Oryzabase Gene Symbol Synonym(s)=OsRPK1;Oryzabase Gene Name Synonym(s)=leucine-rich repeat receptor-like kinase 1;Note=Hypothetical conserved gene.;Transcript_evidence=AK105683 (DDBJ%2C Best hit);ORF_evidence=Q75KZ6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=001-201-B07;Oryzabase=16707;Expression=AK105683;TENOR=Os05t0486100-02;KEGG=Os05t0486100-02
Chr05	irgsp1_rep	five_prime_UTR	23903878	23903878	.	-	.	Parent=Os05t0486100-02
Chr05	irgsp1_rep	CDS	23903717	23903877	.	-	0	Parent=Os05t0486100-02
Chr05	irgsp1_rep	CDS	23903539	23903610	.	-	1	Parent=Os05t0486100-02
Chr05	irgsp1_rep	CDS	23903387	23903458	.	-	1	Parent=Os05t0486100-02
Chr05	irgsp1_rep	CDS	23903216	23903287	.	-	1	Parent=Os05t0486100-02
Chr05	irgsp1_rep	CDS	23903073	23903141	.	-	1	Parent=Os05t0486100-02
Chr05	irgsp1_rep	CDS	23902914	23902988	.	-	1	Parent=Os05t0486100-02
Chr05	irgsp1_rep	CDS	23902748	23902823	.	-	1	Parent=Os05t0486100-02
Chr05	irgsp1_rep	three_prime_UTR	23902741	23902747	.	-	.	Parent=Os05t0486100-02
Chr05	irgsp1_rep	three_prime_UTR	23902535	23902622	.	-	.	Parent=Os05t0486100-02
Chr05	irgsp1_rep	three_prime_UTR	23901948	23902426	.	-	.	Parent=Os05t0486100-02
Chr05	irgsp1_rep	three_prime_UTR	23901507	23901549	.	-	.	Parent=Os05t0486100-02
Chr05	irgsp1_rep	three_prime_UTR	23900971	23901330	.	-	.	Parent=Os05t0486100-02
Chr05	irgsp1_rep	three_prime_UTR	23900614	23900846	.	-	.	Parent=Os05t0486100-02
Chr05	irgsp1_rep	three_prime_UTR	23899480	23900160	.	-	.	Parent=Os05t0486100-02
Chr05	irgsp1_rep	mRNA	23899664	23900975	.	+	.	ID=Os05t0486150-01;Name=Os05t0486150-01;Locus_id=Os05g0486150;Note=Hypothetical gene.;Transcript_evidence=AK241835 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065213G17;TENOR=Os05t0486150-01
Chr05	irgsp1_rep	five_prime_UTR	23899664	23900154	.	+	.	Parent=Os05t0486150-01
Chr05	irgsp1_rep	five_prime_UTR	23900570	23900640	.	+	.	Parent=Os05t0486150-01
Chr05	irgsp1_rep	CDS	23900641	23900975	.	+	0	Parent=Os05t0486150-01
Chr05	irgsp1_rep	mRNA	23907885	23910582	.	-	.	ID=Os05t0486200-01;Name=Os05t0486200-01;Locus_id=Os05g0486200;Note=Protein of unknown function KRTCAP2 domain containing protein.;Transcript_evidence=AK121022 (DDBJ%2C Best hit);ORF_evidence=B6SJ34 (UniProt);InterPro=Uncharacterised protein family KRTCAP2 (IPR018614);NIAS_FLcDNA=J023049I09;Expression=AK121022;TENOR=Os05t0486200-01;KEGG=Os05t0486200-01
Chr05	irgsp1_rep	five_prime_UTR	23910435	23910582	.	-	.	Parent=Os05t0486200-01
Chr05	irgsp1_rep	CDS	23910157	23910315	.	-	0	Parent=Os05t0486200-01
Chr05	irgsp1_rep	CDS	23909116	23909167	.	-	0	Parent=Os05t0486200-01
Chr05	irgsp1_rep	CDS	23908966	23909032	.	-	2	Parent=Os05t0486200-01
Chr05	irgsp1_rep	CDS	23908096	23908186	.	-	1	Parent=Os05t0486200-01
Chr05	irgsp1_rep	three_prime_UTR	23907885	23908095	.	-	.	Parent=Os05t0486200-01
Chr05	irgsp1_rep	mRNA	23911861	23922392	.	+	.	ID=Os05t0486300-01;Name=Os05t0486300-01;Locus_id=Os05g0486300;Note=Similar to CCR4-NOT transcription complex subunit 2.;Transcript_evidence=AK073521 (DDBJ%2C Best hit);ORF_evidence=B6SVB8 (UniProt);NIAS_FLcDNA=J033045I15;TENOR=Os05t0486300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	23911861	23912569	.	+	.	Parent=Os05t0486300-01
Chr05	irgsp1_rep	five_prime_UTR	23912723	23912786	.	+	.	Parent=Os05t0486300-01
Chr05	irgsp1_rep	CDS	23912787	23912828	.	+	0	Parent=Os05t0486300-01
Chr05	irgsp1_rep	CDS	23918300	23918405	.	+	0	Parent=Os05t0486300-01
Chr05	irgsp1_rep	CDS	23918539	23918660	.	+	2	Parent=Os05t0486300-01
Chr05	irgsp1_rep	CDS	23918743	23918806	.	+	0	Parent=Os05t0486300-01
Chr05	irgsp1_rep	CDS	23918897	23919088	.	+	2	Parent=Os05t0486300-01
Chr05	irgsp1_rep	CDS	23919616	23919860	.	+	2	Parent=Os05t0486300-01
Chr05	irgsp1_rep	three_prime_UTR	23919861	23920001	.	+	.	Parent=Os05t0486300-01
Chr05	irgsp1_rep	three_prime_UTR	23920140	23920207	.	+	.	Parent=Os05t0486300-01
Chr05	irgsp1_rep	three_prime_UTR	23920298	23920372	.	+	.	Parent=Os05t0486300-01
Chr05	irgsp1_rep	three_prime_UTR	23920577	23921122	.	+	.	Parent=Os05t0486300-01
Chr05	irgsp1_rep	three_prime_UTR	23921231	23921283	.	+	.	Parent=Os05t0486300-01
Chr05	irgsp1_rep	three_prime_UTR	23921354	23921395	.	+	.	Parent=Os05t0486300-01
Chr05	irgsp1_rep	three_prime_UTR	23921505	23921649	.	+	.	Parent=Os05t0486300-01
Chr05	irgsp1_rep	three_prime_UTR	23921732	23921842	.	+	.	Parent=Os05t0486300-01
Chr05	irgsp1_rep	three_prime_UTR	23921960	23922029	.	+	.	Parent=Os05t0486300-01
Chr05	irgsp1_rep	three_prime_UTR	23922137	23922392	.	+	.	Parent=Os05t0486300-01
Chr05	irgsp1_rep	mRNA	23931558	23936930	.	-	.	ID=Os05t0486600-01;Name=Os05t0486600-01;Locus_id=Os05g0486600;Oryzabase Gene Symbol Synonym(s)=BARD1;Note=Hypothetical conserved gene.;Transcript_evidence=AK242560 (DDBJ%2C Best hit);ORF_evidence=B9FKU8 (UniProt);GO=Cellular Component: intracellular (GO:0005622);InterPro=BRCT (IPR001357);NIAS_FLcDNA=J090003F01;Oryzabase=21316;TENOR=Os05t0486600-01;KEGG=Os05t0486600-01 (EC:6.3.2.19)
Chr05	irgsp1_rep	five_prime_UTR	23936696	23936930	.	-	.	Parent=Os05t0486600-01
Chr05	irgsp1_rep	five_prime_UTR	23935486	23935575	.	-	.	Parent=Os05t0486600-01
Chr05	irgsp1_rep	CDS	23935441	23935485	.	-	0	Parent=Os05t0486600-01
Chr05	irgsp1_rep	CDS	23935002	23935256	.	-	0	Parent=Os05t0486600-01
Chr05	irgsp1_rep	CDS	23934807	23934913	.	-	0	Parent=Os05t0486600-01
Chr05	irgsp1_rep	CDS	23933910	23934096	.	-	1	Parent=Os05t0486600-01
Chr05	irgsp1_rep	CDS	23933696	23933802	.	-	0	Parent=Os05t0486600-01
Chr05	irgsp1_rep	CDS	23933477	23933569	.	-	1	Parent=Os05t0486600-01
Chr05	irgsp1_rep	CDS	23933280	23933366	.	-	1	Parent=Os05t0486600-01
Chr05	irgsp1_rep	CDS	23933035	23933170	.	-	1	Parent=Os05t0486600-01
Chr05	irgsp1_rep	CDS	23932690	23932855	.	-	0	Parent=Os05t0486600-01
Chr05	irgsp1_rep	CDS	23932382	23932506	.	-	2	Parent=Os05t0486600-01
Chr05	irgsp1_rep	CDS	23931698	23932066	.	-	0	Parent=Os05t0486600-01
Chr05	irgsp1_rep	three_prime_UTR	23931558	23931697	.	-	.	Parent=Os05t0486600-01
Chr05	irgsp1_rep	mRNA	23939959	23943133	.	-	.	ID=Os05t0486700-01;Name=Os05t0486700-01;Locus_id=Os05g0486700;Note=Ribosomal protein L24e domain containing protein.;Transcript_evidence=AK059430 (DDBJ%2C Best hit);ORF_evidence=NP_001150133.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L24e-related (IPR000988),TRASH (IPR011017),Ribosomal protein L24e domain (IPR023441),Ribosomal protein L24e%2C conserved site (IPR023442);NIAS_FLcDNA=001-027-F02;Expression=AK059430;TENOR=Os05t0486700-01;KEGG=Os05t0486700-01
Chr05	irgsp1_rep	five_prime_UTR	23943065	23943133	.	-	.	Parent=Os05t0486700-01
Chr05	irgsp1_rep	five_prime_UTR	23941780	23941806	.	-	.	Parent=Os05t0486700-01
Chr05	irgsp1_rep	CDS	23941769	23941779	.	-	0	Parent=Os05t0486700-01
Chr05	irgsp1_rep	CDS	23941500	23941575	.	-	1	Parent=Os05t0486700-01
Chr05	irgsp1_rep	CDS	23941311	23941412	.	-	0	Parent=Os05t0486700-01
Chr05	irgsp1_rep	CDS	23940677	23940825	.	-	0	Parent=Os05t0486700-01
Chr05	irgsp1_rep	CDS	23940155	23940302	.	-	1	Parent=Os05t0486700-01
Chr05	irgsp1_rep	three_prime_UTR	23939959	23940154	.	-	.	Parent=Os05t0486700-01
Chr05	irgsp1_rep	mRNA	23940566	23941400	.	+	.	ID=Os05t0486833-00;Name=Os05t0486833-00;Locus_id=Os05g0486833;Note=Hypothetical conserved gene.;Transcript_evidence=BT065526 (DDBJ);ORF_evidence=C0HHH7 (UniProt);TENOR=Os05t0486833-00
Chr05	irgsp1_rep	CDS	23940566	23940824	.	+	0	Parent=Os05t0486833-00
Chr05	irgsp1_rep	CDS	23941310	23941380	.	+	2	Parent=Os05t0486833-00
Chr05	irgsp1_rep	three_prime_UTR	23941381	23941400	.	+	.	Parent=Os05t0486833-00
Chr05	irgsp1_rep	mRNA	23958685	23959559	.	+	.	ID=Os05t0487100-00;Name=Os05t0487100-00;Locus_id=Os05g0487100;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FKV0 (UniProt);TENOR=Os05t0487100-00;KEGG=Os05t0487100-00
Chr05	irgsp1_rep	CDS	23958685	23958775	.	+	0	Parent=Os05t0487100-00
Chr05	irgsp1_rep	CDS	23958867	23958925	.	+	2	Parent=Os05t0487100-00
Chr05	irgsp1_rep	CDS	23959131	23959559	.	+	0	Parent=Os05t0487100-00
Chr05	irgsp1_rep	mRNA	23978577	23979669	.	+	.	ID=Os05t0487300-01;Name=Os05t0487300-01;Locus_id=Os05g0487300;Note=Conserved hypothetical protein.;Transcript_evidence=AK062926 (DDBJ%2C Best hit);ORF_evidence=B8AZG8 (UniProt);NIAS_FLcDNA=001-109-A02;Expression=AK062926;TENOR=Os05t0487300-01;KEGG=Os05t0487300-01
Chr05	irgsp1_rep	five_prime_UTR	23978577	23978730	.	+	.	Parent=Os05t0487300-01
Chr05	irgsp1_rep	CDS	23978731	23978836	.	+	0	Parent=Os05t0487300-01
Chr05	irgsp1_rep	CDS	23978953	23979014	.	+	2	Parent=Os05t0487300-01
Chr05	irgsp1_rep	CDS	23979224	23979358	.	+	0	Parent=Os05t0487300-01
Chr05	irgsp1_rep	three_prime_UTR	23979359	23979363	.	+	.	Parent=Os05t0487300-01
Chr05	irgsp1_rep	three_prime_UTR	23979617	23979669	.	+	.	Parent=Os05t0487300-01
Chr05	irgsp1_rep	mRNA	23978676	23979669	.	+	.	ID=Os05t0487300-02;Name=Os05t0487300-02;Locus_id=Os05g0487300;Note=Conserved hypothetical protein.;Transcript_evidence=AK064162 (DDBJ%2C Best hit);ORF_evidence=B8AZG8 (UniProt);NIAS_FLcDNA=002-103-G07;Expression=AK064162;TENOR=Os05t0487300-02;KEGG=Os05t0487300-02
Chr05	irgsp1_rep	five_prime_UTR	23978676	23978730	.	+	.	Parent=Os05t0487300-02
Chr05	irgsp1_rep	CDS	23978731	23978836	.	+	0	Parent=Os05t0487300-02
Chr05	irgsp1_rep	CDS	23978953	23979014	.	+	2	Parent=Os05t0487300-02
Chr05	irgsp1_rep	CDS	23979224	23979358	.	+	0	Parent=Os05t0487300-02
Chr05	irgsp1_rep	three_prime_UTR	23979359	23979669	.	+	.	Parent=Os05t0487300-02
Chr05	irgsp1_rep	mRNA	23991013	23994405	.	-	.	ID=Os05t0487600-01;Name=Os05t0487600-01;Locus_id=Os05g0487600;Oryzabase Gene Symbol Synonym(s)=Vatp%2C OsSTA154;Oryzabase Gene Name Synonym(s)=V-ATPase B-subunit%2C p-VATPase;Note=Similar to vacuolar ATP synthase subunit B.;Transcript_evidence=AK103104 (DDBJ%2C Best hit);ORF_evidence=NP_001148978.1 (RefSeq);NIAS_FLcDNA=J033118O17;Oryzabase=14970;TENOR=Os05t0487600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	23993479	23994405	.	-	.	Parent=Os05t0487600-01
Chr05	irgsp1_rep	five_prime_UTR	23993300	23993392	.	-	.	Parent=Os05t0487600-01
Chr05	irgsp1_rep	five_prime_UTR	23993020	23993076	.	-	.	Parent=Os05t0487600-01
Chr05	irgsp1_rep	five_prime_UTR	23992908	23992913	.	-	.	Parent=Os05t0487600-01
Chr05	irgsp1_rep	CDS	23992641	23992907	.	-	0	Parent=Os05t0487600-01
Chr05	irgsp1_rep	CDS	23991406	23991537	.	-	0	Parent=Os05t0487600-01
Chr05	irgsp1_rep	three_prime_UTR	23991013	23991405	.	-	.	Parent=Os05t0487600-01
Chr05	irgsp1_rep	mRNA	23990929	23994400	.	-	.	ID=Os05t0487600-02;Name=Os05t0487600-02;Locus_id=Os05g0487600;Oryzabase Gene Symbol Synonym(s)=Vatp%2C OsSTA154;Oryzabase Gene Name Synonym(s)=V-ATPase B-subunit%2C p-VATPase;Note=Similar to Vacuolar ATPase B subunit.;Transcript_evidence=AK100817 (DDBJ%2C Best hit);ORF_evidence=Q7FV25 (UniProt);NIAS_FLcDNA=J023122D13;Oryzabase=14970;TENOR=Os05t0487600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	23992883	23994400	.	-	.	Parent=Os05t0487600-02
Chr05	irgsp1_rep	CDS	23992823	23992882	.	-	0	Parent=Os05t0487600-02
Chr05	irgsp1_rep	CDS	23992641	23992695	.	-	0	Parent=Os05t0487600-02
Chr05	irgsp1_rep	CDS	23991518	23991537	.	-	2	Parent=Os05t0487600-02
Chr05	irgsp1_rep	three_prime_UTR	23990929	23991517	.	-	.	Parent=Os05t0487600-02
Chr05	irgsp1_rep	mRNA	23991122	23993944	.	-	.	ID=Os05t0487600-03;Name=Os05t0487600-03;Locus_id=Os05g0487600;Oryzabase Gene Symbol Synonym(s)=Vatp%2C OsSTA154;Oryzabase Gene Name Synonym(s)=V-ATPase B-subunit%2C p-VATPase;Note=Similar to Vacuolar ATPase B subunit.;Transcript_evidence=AK059850 (DDBJ%2C Best hit);ORF_evidence=Q7FV25 (UniProt);NIAS_FLcDNA=006-206-G02;Oryzabase=14970;TENOR=Os05t0487600-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	23993479	23993944	.	-	.	Parent=Os05t0487600-03
Chr05	irgsp1_rep	five_prime_UTR	23993300	23993392	.	-	.	Parent=Os05t0487600-03
Chr05	irgsp1_rep	five_prime_UTR	23993020	23993076	.	-	.	Parent=Os05t0487600-03
Chr05	irgsp1_rep	five_prime_UTR	23992883	23992913	.	-	.	Parent=Os05t0487600-03
Chr05	irgsp1_rep	CDS	23992823	23992882	.	-	0	Parent=Os05t0487600-03
Chr05	irgsp1_rep	CDS	23992641	23992695	.	-	0	Parent=Os05t0487600-03
Chr05	irgsp1_rep	CDS	23991518	23991537	.	-	2	Parent=Os05t0487600-03
Chr05	irgsp1_rep	three_prime_UTR	23991122	23991517	.	-	.	Parent=Os05t0487600-03
Chr05	irgsp1_rep	mRNA	23996148	23997293	.	+	.	ID=Os05t0488000-01;Name=Os05t0488000-01;Locus_id=Os05g0488000;Note=Peptidase C1A%2C papain family protein.;Transcript_evidence=AK069201 (DDBJ%2C Best hit),AK062393 (DDBJ%2C Best hit);ORF_evidence=Q01JZ1 (UniProt);NIAS_FLcDNA=J023008B04,001-102-D03;Oryzabase=20249;TENOR=Os05t0488000-01
Chr05	irgsp1_rep	five_prime_UTR	23996148	23996223	.	+	.	Parent=Os05t0488000-01
Chr05	irgsp1_rep	CDS	23996224	23996470	.	+	0	Parent=Os05t0488000-01
Chr05	irgsp1_rep	CDS	23996705	23997018	.	+	2	Parent=Os05t0488000-01
Chr05	irgsp1_rep	three_prime_UTR	23997019	23997293	.	+	.	Parent=Os05t0488000-01
Chr05	irgsp1_rep	mRNA	24000267	24002607	.	-	.	ID=Os05t0488100-01;Name=Os05t0488100-01;Locus_id=Os05g0488100;Note=Conserved hypothetical protein.;Transcript_evidence=AK109773 (DDBJ%2C Best hit);ORF_evidence=B8AZH0 (UniProt);NIAS_FLcDNA=002-147-B02;TENOR=Os05t0488100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	24002606	24002607	.	-	.	Parent=Os05t0488100-01
Chr05	irgsp1_rep	CDS	24002299	24002605	.	-	0	Parent=Os05t0488100-01
Chr05	irgsp1_rep	CDS	24001942	24002088	.	-	2	Parent=Os05t0488100-01
Chr05	irgsp1_rep	CDS	24001669	24001795	.	-	2	Parent=Os05t0488100-01
Chr05	irgsp1_rep	CDS	24001430	24001492	.	-	1	Parent=Os05t0488100-01
Chr05	irgsp1_rep	CDS	24000351	24001254	.	-	1	Parent=Os05t0488100-01
Chr05	irgsp1_rep	three_prime_UTR	24000267	24000350	.	-	.	Parent=Os05t0488100-01
Chr05	irgsp1_rep	mRNA	24013460	24014424	.	+	.	ID=Os05t0488500-01;Name=Os05t0488500-01;Locus_id=Os05g0488500;Note=Ribosomal protein L34e family protein.;Transcript_evidence=AK109649 (DDBJ%2C Best hit);ORF_evidence=B8AZH1 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L34Ae (IPR008195);NIAS_FLcDNA=002-139-G04;Expression=AK109649;TENOR=Os05t0488500-01;KEGG=Os05t0488500-01
Chr05	irgsp1_rep	five_prime_UTR	24013460	24013510	.	+	.	Parent=Os05t0488500-01
Chr05	irgsp1_rep	CDS	24013511	24014236	.	+	0	Parent=Os05t0488500-01
Chr05	irgsp1_rep	three_prime_UTR	24014237	24014424	.	+	.	Parent=Os05t0488500-01
Chr05	irgsp1_rep	mRNA	24015243	24017576	.	-	.	ID=Os05t0488600-01;Name=Os05t0488600-01;Locus_id=Os05g0488600;CGSNL Gene Symbol=DLN147;CGSNL Gene Name=DLN REPRESSOR 147;Oryzabase Gene Symbol Synonym(s)=OsDLN147%2C OsDLN147a%2C OsDLN147b%2C DLN147a%2C DLN147b;Oryzabase Gene Name Synonym(s)=DLN repressor 147%2C DLN motif protein 147;Note=Similar to Phosphate starvation regulator protein (Regulatory protein of P- starvation acclimation response Psr1).;Transcript_evidence=AK241362 (DDBJ%2C Best hit);ORF_evidence=B9FKV5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J065151H17;Oryzabase=23204;TENOR=Os05t0488600-01;KEGG=Os05t0488600-01
Chr05	irgsp1_rep	five_prime_UTR	24017507	24017576	.	-	.	Parent=Os05t0488600-01
Chr05	irgsp1_rep	CDS	24017302	24017506	.	-	0	Parent=Os05t0488600-01
Chr05	irgsp1_rep	CDS	24017154	24017230	.	-	2	Parent=Os05t0488600-01
Chr05	irgsp1_rep	CDS	24017016	24017073	.	-	0	Parent=Os05t0488600-01
Chr05	irgsp1_rep	CDS	24016853	24016940	.	-	2	Parent=Os05t0488600-01
Chr05	irgsp1_rep	CDS	24016706	24016775	.	-	1	Parent=Os05t0488600-01
Chr05	irgsp1_rep	CDS	24015419	24016156	.	-	0	Parent=Os05t0488600-01
Chr05	irgsp1_rep	three_prime_UTR	24015243	24015418	.	-	.	Parent=Os05t0488600-01
Chr05	irgsp1_rep	mRNA	24023674	24026150	.	-	.	ID=Os05t0488800-01;Name=Os05t0488800-01;Locus_id=Os05g0488800;RAP-DB Gene Symbol Synonym(s)=OsSIRP1%2C SIRP1;RAP-DB Gene Name Synonym(s)=salt-induced RING Finger Protein 1;Oryzabase Gene Symbol Synonym(s)=OsSIRP1%2C SIRP1%2C DLN148%2C OsDLN148;Oryzabase Gene Name Synonym(s)=salt-induced RING Finger Protein 1%2C DLN repressor 148%2C DLN motif protein 148;Note=Salt-induced RING Finger Protein%2C Negative regulation of response to salt stress;Transcript_evidence=AK240640;ORF_evidence=Q6AVN2;GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA polymerase subunit RPABC4/transcription elongation factor Spt4 (IPR029040),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841);NIAS_FLcDNA=J013096K09;Manual Curation=July 26%2C 2016;Literature_PMID=27118216;Oryzabase=21082;TENOR=Os05t0488800-01;KEGG=Os05t0488800-01
Chr05	irgsp1_rep	five_prime_UTR	24026035	24026150	.	-	.	Parent=Os05t0488800-01
Chr05	irgsp1_rep	five_prime_UTR	24025227	24025270	.	-	.	Parent=Os05t0488800-01
Chr05	irgsp1_rep	CDS	24024255	24025226	.	-	0	Parent=Os05t0488800-01
Chr05	irgsp1_rep	three_prime_UTR	24023674	24024254	.	-	.	Parent=Os05t0488800-01
Chr05	irgsp1_rep	mRNA	24027775	24030803	.	+	.	ID=Os05t0488900-01;Name=Os05t0488900-01;Locus_id=Os05g0488900;Note=Similar to CytoChrome b5 reductase.;Transcript_evidence=AK071883 (DDBJ%2C Best hit),AK073699 (DDBJ%2C Best hit),AK105459 (DDBJ%2C Best hit);ORF_evidence=NP_001106072.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Oxidoreductase FAD/NAD(P)-binding (IPR001433),Flavoprotein pyridine nucleotide cytoChrome reductase (IPR001709),NADH:cytoChrome b5 reductase (CBR) (IPR001834),Oxidoreductase%2C FAD-binding domain (IPR008333),Ferredoxin reductase-type FAD-binding domain (IPR017927),Riboflavin synthase-like beta-barrel (IPR017938);NIAS_FLcDNA=J013046O12,J033059L16,001-125-E07;TENOR=Os05t0488900-01
Chr05	irgsp1_rep	five_prime_UTR	24027775	24027888	.	+	.	Parent=Os05t0488900-01
Chr05	irgsp1_rep	CDS	24027889	24028009	.	+	0	Parent=Os05t0488900-01
Chr05	irgsp1_rep	CDS	24028264	24028405	.	+	2	Parent=Os05t0488900-01
Chr05	irgsp1_rep	CDS	24028501	24028591	.	+	1	Parent=Os05t0488900-01
Chr05	irgsp1_rep	CDS	24028746	24028823	.	+	0	Parent=Os05t0488900-01
Chr05	irgsp1_rep	CDS	24028955	24029035	.	+	0	Parent=Os05t0488900-01
Chr05	irgsp1_rep	CDS	24029125	24029214	.	+	0	Parent=Os05t0488900-01
Chr05	irgsp1_rep	CDS	24029849	24029914	.	+	0	Parent=Os05t0488900-01
Chr05	irgsp1_rep	CDS	24030092	24030178	.	+	0	Parent=Os05t0488900-01
Chr05	irgsp1_rep	CDS	24030318	24030410	.	+	0	Parent=Os05t0488900-01
Chr05	irgsp1_rep	three_prime_UTR	24030411	24030803	.	+	.	Parent=Os05t0488900-01
Chr05	irgsp1_rep	mRNA	24033610	24039043	.	+	.	ID=Os05t0489000-01;Name=Os05t0489000-01;Locus_id=Os05g0489000;Note=Endonuclease/exonuclease/phosphatase domain containing protein.;Transcript_evidence=AK066065 (DDBJ%2C Best hit);ORF_evidence=NP_196117.2 (RefSeq);GO=Molecular Function: inositol or phosphatidylinositol phosphatase activity (GO:0004437);InterPro=Inositol polyphosphate-related phosphatase (IPR000300),Endonuclease/exonuclease/phosphatase (IPR005135);NIAS_FLcDNA=J013055K24;Expression=AK066065;TENOR=Os05t0489000-01;KEGG=Os05t0489000-01 (EC:3.1.3.36)
Chr05	irgsp1_rep	five_prime_UTR	24033610	24034252	.	+	.	Parent=Os05t0489000-01
Chr05	irgsp1_rep	five_prime_UTR	24034671	24034726	.	+	.	Parent=Os05t0489000-01
Chr05	irgsp1_rep	CDS	24034727	24034759	.	+	0	Parent=Os05t0489000-01
Chr05	irgsp1_rep	CDS	24034944	24035019	.	+	0	Parent=Os05t0489000-01
Chr05	irgsp1_rep	CDS	24035426	24035485	.	+	2	Parent=Os05t0489000-01
Chr05	irgsp1_rep	CDS	24035595	24035664	.	+	2	Parent=Os05t0489000-01
Chr05	irgsp1_rep	CDS	24035775	24035879	.	+	1	Parent=Os05t0489000-01
Chr05	irgsp1_rep	CDS	24036133	24036757	.	+	1	Parent=Os05t0489000-01
Chr05	irgsp1_rep	CDS	24037199	24037389	.	+	0	Parent=Os05t0489000-01
Chr05	irgsp1_rep	CDS	24037483	24037591	.	+	1	Parent=Os05t0489000-01
Chr05	irgsp1_rep	CDS	24037793	24037941	.	+	0	Parent=Os05t0489000-01
Chr05	irgsp1_rep	CDS	24038330	24038556	.	+	1	Parent=Os05t0489000-01
Chr05	irgsp1_rep	CDS	24038655	24038668	.	+	2	Parent=Os05t0489000-01
Chr05	irgsp1_rep	three_prime_UTR	24038669	24039043	.	+	.	Parent=Os05t0489000-01
Chr05	irgsp1_rep	mRNA	24041023	24043904	.	+	.	ID=Os05t0489100-01;Name=Os05t0489100-01;Locus_id=Os05g0489100;Note=Similar to Prolyl 4-hydroxylase alpha subunit-like protein.;Transcript_evidence=AK103739 (DDBJ%2C Best hit);ORF_evidence=B4FLB6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706),Molecular Function: L-ascorbic acid binding (GO:0031418);InterPro=Metridin-like ShK toxin (IPR003582),Oxoglutarate/iron-dependent oxygenase (IPR005123),Prolyl 4-hydroxylase%2C alpha subunit (IPR006620);NIAS_FLcDNA=J033138K17;Expression=AK103739;TENOR=Os05t0489100-01;KEGG=Os05t0489100-01 (EC:1.14.11.2)
Chr05	irgsp1_rep	five_prime_UTR	24041023	24041201	.	+	.	Parent=Os05t0489100-01
Chr05	irgsp1_rep	CDS	24041202	24041398	.	+	0	Parent=Os05t0489100-01
Chr05	irgsp1_rep	CDS	24041500	24041557	.	+	1	Parent=Os05t0489100-01
Chr05	irgsp1_rep	CDS	24041693	24041797	.	+	0	Parent=Os05t0489100-01
Chr05	irgsp1_rep	CDS	24042039	24042096	.	+	0	Parent=Os05t0489100-01
Chr05	irgsp1_rep	CDS	24042576	24042751	.	+	2	Parent=Os05t0489100-01
Chr05	irgsp1_rep	CDS	24042922	24042991	.	+	0	Parent=Os05t0489100-01
Chr05	irgsp1_rep	CDS	24043099	24043394	.	+	2	Parent=Os05t0489100-01
Chr05	irgsp1_rep	three_prime_UTR	24043395	24043904	.	+	.	Parent=Os05t0489100-01
Chr05	irgsp1_rep	mRNA	24045555	24047844	.	-	.	ID=Os05t0489200-01;Name=Os05t0489200-01;Locus_id=Os05g0489200;Oryzabase Gene Symbol Synonym(s)=OsLTPG12%2C OsLTPg12;Oryzabase Gene Name Synonym(s)=GPI-anchored non-specific lipid transfer protein 12%2C type G nsLTP 12%2C type G non-specific lipid transfer protein 12;Note=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor domain containing protein.;Transcript_evidence=AK069135 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=J023007E22;Oryzabase=13498;TENOR=Os05t0489200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	24047346	24047844	.	-	0	Parent=Os05t0489200-01
Chr05	irgsp1_rep	CDS	24046801	24046887	.	-	2	Parent=Os05t0489200-01
Chr05	irgsp1_rep	CDS	24045835	24045983	.	-	2	Parent=Os05t0489200-01
Chr05	irgsp1_rep	three_prime_UTR	24045555	24045834	.	-	.	Parent=Os05t0489200-01
Chr05	irgsp1_rep	mRNA	24046233	24046659	.	-	.	ID=Os05t0489301-00;Name=Os05t0489301-00;Locus_id=Os05g0489301;Note=Non-protein coding transcript.;Transcript_evidence=CT836470 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os05t0489301-00
Chr05	irgsp1_rep	exon	24046233	24046659	.	-	.	Parent=Os05t0489301-00
Chr05	irgsp1_rep	mRNA	24054716	24055546	.	-	.	ID=Os05t0489500-01;Name=Os05t0489500-01;Locus_id=Os05g0489500;Note=Similar to H0322F07.8 protein.;Transcript_evidence=AK241508 (DDBJ%2C Best hit);ORF_evidence=Q259A1 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C GRF-type (IPR010666);NIAS_FLcDNA=J065168G17;TENOR=Os05t0489500-01;KEGG=Os05t0489500-01
Chr05	irgsp1_rep	five_prime_UTR	24055432	24055546	.	-	.	Parent=Os05t0489500-01
Chr05	irgsp1_rep	CDS	24055204	24055431	.	-	0	Parent=Os05t0489500-01
Chr05	irgsp1_rep	CDS	24054782	24055111	.	-	0	Parent=Os05t0489500-01
Chr05	irgsp1_rep	three_prime_UTR	24054716	24054781	.	-	.	Parent=Os05t0489500-01
Chr05	irgsp1_rep	mRNA	24057448	24060607	.	-	.	ID=Os05t0489600-01;Name=Os05t0489600-01;Locus_id=Os05g0489600;Oryzabase Gene Symbol Synonym(s)=ARF%2C ARF1%2C OsARFA1b%2C ARFA1b;Oryzabase Gene Name Synonym(s)=ADP-ribosylation factor%2C ADP-ribosylation factor 1%2C ADP-ribosylation factor A1b;Note=Similar to ADP-ribosylation factor 1.;Transcript_evidence=AK061970 (DDBJ%2C Best hit),AK067029 (DDBJ%2C Best hit);ORF_evidence=Q76ME3 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C SAR1-type (IPR006687),Small GTPase superfamily%2C ARF/SAR type (IPR006689),Small GTPase superfamily%2C ARF type (IPR024156);NIAS_FLcDNA=001-042-H06,J013092P04;Oryzabase=15753;Expression=AK061970;TENOR=Os05t0489600-01;KEGG=Os05t0489600-01
Chr05	irgsp1_rep	five_prime_UTR	24060436	24060607	.	-	.	Parent=Os05t0489600-01
Chr05	irgsp1_rep	five_prime_UTR	24059864	24059876	.	-	.	Parent=Os05t0489600-01
Chr05	irgsp1_rep	CDS	24059716	24059863	.	-	0	Parent=Os05t0489600-01
Chr05	irgsp1_rep	CDS	24059118	24059188	.	-	2	Parent=Os05t0489600-01
Chr05	irgsp1_rep	CDS	24058671	24058790	.	-	0	Parent=Os05t0489600-01
Chr05	irgsp1_rep	CDS	24058211	24058329	.	-	0	Parent=Os05t0489600-01
Chr05	irgsp1_rep	CDS	24057822	24057903	.	-	1	Parent=Os05t0489600-01
Chr05	irgsp1_rep	CDS	24057693	24057698	.	-	0	Parent=Os05t0489600-01
Chr05	irgsp1_rep	three_prime_UTR	24057448	24057692	.	-	.	Parent=Os05t0489600-01
Chr05	irgsp1_rep	mRNA	24057380	24060567	.	-	.	ID=Os05t0489600-03;Name=Os05t0489600-03;Locus_id=Os05g0489600;Oryzabase Gene Symbol Synonym(s)=ARF%2C ARF1%2C OsARFA1b%2C ARFA1b;Oryzabase Gene Name Synonym(s)=ADP-ribosylation factor%2C ADP-ribosylation factor 1%2C ADP-ribosylation factor A1b;Note=Similar to ADP-ribosylation factor 1.;Transcript_evidence=AK120035 (DDBJ%2C Best hit);ORF_evidence=Q76ME3 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C SAR1-type (IPR006687),Small GTPase superfamily%2C ARF/SAR type (IPR006689),Small GTPase superfamily%2C ARF type (IPR024156);NIAS_FLcDNA=002-188-C08;Oryzabase=15753;Expression=AK120035;TENOR=Os05t0489600-03;KEGG=Os05t0489600-03
Chr05	irgsp1_rep	five_prime_UTR	24060436	24060567	.	-	.	Parent=Os05t0489600-03
Chr05	irgsp1_rep	five_prime_UTR	24059864	24059876	.	-	.	Parent=Os05t0489600-03
Chr05	irgsp1_rep	CDS	24059716	24059863	.	-	0	Parent=Os05t0489600-03
Chr05	irgsp1_rep	CDS	24059118	24059188	.	-	2	Parent=Os05t0489600-03
Chr05	irgsp1_rep	CDS	24058671	24058790	.	-	0	Parent=Os05t0489600-03
Chr05	irgsp1_rep	CDS	24058211	24058329	.	-	0	Parent=Os05t0489600-03
Chr05	irgsp1_rep	CDS	24057822	24057903	.	-	1	Parent=Os05t0489600-03
Chr05	irgsp1_rep	CDS	24057693	24057698	.	-	0	Parent=Os05t0489600-03
Chr05	irgsp1_rep	three_prime_UTR	24057380	24057692	.	-	.	Parent=Os05t0489600-03
Chr05	irgsp1_rep	mRNA	24062649	24065939	.	+	.	ID=Os05t0489700-01;Name=Os05t0489700-01;Locus_id=Os05g0489700;RAP-DB Gene Symbol Synonym(s)=HBF1%2C OsbZIP42;RAP-DB Gene Name Synonym(s)=Hd3a BINDING REPRESSOR FACTOR1%2C b-ZIP TRANSCRIPTION FACTOR 42;CGSNL Gene Symbol=BZIP42;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 42;Oryzabase Gene Symbol Synonym(s)=OsbZIP42%2C OsABF7%2C ABF7%2C HBF1%2C DLN149%2C OsDLN149;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 42%2C Hd3a BINDING REPRESSOR FACTOR1%2C Hd3a BINDING REPRESSOR FACTOR 1%2C DLN repressor 149%2C DLN motif protein 149;Note=bZIP transcription factor%2C Modulation of the floral transition%2C Floral repressor;Transcript_evidence=AK063398;ORF_evidence=Q6AVM5;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700);InterPro=Basic-leucine zipper domain (IPR004827);NIAS_FLcDNA=001-114-H11;Manual Curation=December 20%2C 2017;Literature_PMID=29042404;Oryzabase=10127;Expression=AK063398;TENOR=Os05t0489700-01;KEGG=Os05t0489700-01
Chr05	irgsp1_rep	five_prime_UTR	24062649	24062913	.	+	.	Parent=Os05t0489700-01
Chr05	irgsp1_rep	five_prime_UTR	24063103	24063243	.	+	.	Parent=Os05t0489700-01
Chr05	irgsp1_rep	CDS	24063244	24064098	.	+	0	Parent=Os05t0489700-01
Chr05	irgsp1_rep	CDS	24064397	24064468	.	+	0	Parent=Os05t0489700-01
Chr05	irgsp1_rep	CDS	24065543	24065623	.	+	0	Parent=Os05t0489700-01
Chr05	irgsp1_rep	three_prime_UTR	24065624	24065939	.	+	.	Parent=Os05t0489700-01
Chr05	irgsp1_rep	mRNA	24066898	24067171	.	+	.	ID=Os05t0489750-00;Name=Os05t0489750-00;Locus_id=Os05g0489750;Note=Hypothetical protein.;Transcript_evidence=FP101076 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0489750-00
Chr05	irgsp1_rep	five_prime_UTR	24066898	24066901	.	+	.	Parent=Os05t0489750-00
Chr05	irgsp1_rep	CDS	24066902	24067165	.	+	0	Parent=Os05t0489750-00
Chr05	irgsp1_rep	three_prime_UTR	24067166	24067171	.	+	.	Parent=Os05t0489750-00
Chr05	irgsp1_rep	mRNA	24067727	24070193	.	-	.	ID=Os05t0489800-01;Name=Os05t0489800-01;Locus_id=Os05g0489800;RAP-DB Gene Symbol Synonym(s)=OsCENH3;RAP-DB Gene Name Synonym(s)=centromere-specific H3 histone;CGSNL Gene Symbol=CENH3;CGSNL Gene Name=CENTROMERIC HISTONE 3C;Oryzabase Gene Symbol Synonym(s)=CENH3%2C CenH3;Oryzabase Gene Name Synonym(s)=centromeric histone H3%2C centromere-specific histone H3%2C centromere-specific H3 histone%2C centromere-specific histone H3;Note=Centromere-specific histone H3;Transcript_evidence=AK101975;ORF_evidence=Q6T367;GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein heterodimerization activity (GO:0046982),Cellular Component: nucleosome (GO:0000786);InterPro=Histone-fold (IPR009072),Histone H3/CENP-A (IPR000164),Histone H2A/H2B/H3 (IPR007125);NIAS_FLcDNA=J033076O08;Manual Curation=July 7%2C 2020;Literature_PMID=14716315,DOI:10.1007/s11434-008-0376-4;Oryzabase=7335;Expression=AK101975;TENOR=Os05t0489800-01;KEGG=Os05t0489800-01;Subcellular location=Chromosome (GO:0005694) [centromere]
Chr05	irgsp1_rep	five_prime_UTR	24070127	24070193	.	-	.	Parent=Os05t0489800-01
Chr05	irgsp1_rep	CDS	24070021	24070126	.	-	0	Parent=Os05t0489800-01
Chr05	irgsp1_rep	CDS	24069871	24069896	.	-	2	Parent=Os05t0489800-01
Chr05	irgsp1_rep	CDS	24069725	24069752	.	-	0	Parent=Os05t0489800-01
Chr05	irgsp1_rep	CDS	24069053	24069183	.	-	2	Parent=Os05t0489800-01
Chr05	irgsp1_rep	CDS	24068884	24068958	.	-	0	Parent=Os05t0489800-01
Chr05	irgsp1_rep	CDS	24068371	24068446	.	-	0	Parent=Os05t0489800-01
Chr05	irgsp1_rep	CDS	24067961	24068013	.	-	2	Parent=Os05t0489800-01
Chr05	irgsp1_rep	three_prime_UTR	24067727	24067960	.	-	.	Parent=Os05t0489800-01
Chr05	irgsp1_rep	mRNA	24071191	24075089	.	-	.	ID=Os05t0489900-01;Name=Os05t0489900-01;Locus_id=Os05g0489900;RAP-DB Gene Symbol Synonym(s)=DMI3%2C OsDMI3%2C OsCCaMK1%2C OsCCaMK%2C OsCCAMK%2C CCAMK;RAP-DB Gene Name Synonym(s)=DOESN'T MAKE INFECTIONS 3%2C DOESN'T MAKE INFECTIONS3%2C calcium and calmodulin-dependent protein kinase 1%2C Ca2+/calmodulin (CaM)-dependent protein kinase%2C CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE;CGSNL Gene Symbol=DMI3;CGSNL Gene Name=DOESN'T MAKE INFECTIONS 3;Oryzabase Gene Symbol Synonym(s)=OsDMI3%2C OsCCaMK1%2C OsCCaMK%2C OsCCAMK%2C CCAMK;Oryzabase Gene Name Synonym(s)=DOESN'T MAKE INFECTIONS3%2C calcium and calmodulin-dependent protein kinase 1%2C Ca2+/calmodulin (CaM)-dependent protein kinase%2C CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE;Note=Ca/calmodulin-dependent protein kinase%2C Calcium/calmodulin-dependent protein kinase%2C Bacterial and fungal symbioses%2C Common symbiosis signaling (SYM) pathway%2C Regulation of saline-alkaline tolerance in root;Transcript_evidence=AK070533 (Genbank);ORF_evidence=Q6AVM3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Recoverin (IPR001125),Calcium-binding EF-hand (IPR002048),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),EF-hand-like domain (IPR011992),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023060B22;Manual Curation=August 31%2C 2020;Literature_PMID=32857669,19074278,19033527,18852152,18794914,17965173;Oryzabase=7420;Expression=AK070533;TENOR=Os05t0489900-01;KEGG=Os05t0489900-01 (EC:2.7.1.123%2C EC:2.7.11.17)
Chr05	irgsp1_rep	five_prime_UTR	24075034	24075089	.	-	.	Parent=Os05t0489900-01
Chr05	irgsp1_rep	five_prime_UTR	24074841	24074934	.	-	.	Parent=Os05t0489900-01
Chr05	irgsp1_rep	CDS	24074134	24074840	.	-	0	Parent=Os05t0489900-01
Chr05	irgsp1_rep	CDS	24073997	24074051	.	-	1	Parent=Os05t0489900-01
Chr05	irgsp1_rep	CDS	24072990	24073100	.	-	0	Parent=Os05t0489900-01
Chr05	irgsp1_rep	CDS	24072662	24072894	.	-	0	Parent=Os05t0489900-01
Chr05	irgsp1_rep	CDS	24072013	24072220	.	-	1	Parent=Os05t0489900-01
Chr05	irgsp1_rep	CDS	24071764	24071823	.	-	0	Parent=Os05t0489900-01
Chr05	irgsp1_rep	CDS	24071457	24071633	.	-	0	Parent=Os05t0489900-01
Chr05	irgsp1_rep	three_prime_UTR	24071191	24071456	.	-	.	Parent=Os05t0489900-01
Chr05	irgsp1_rep	mRNA	24076052	24077881	.	-	.	ID=Os05t0490000-01;Name=Os05t0490000-01;Locus_id=Os05g0490000;Note=KRR1 interacting protein 1 domain containing protein.;Transcript_evidence=AK064335 (DDBJ%2C Best hit),AK101340 (DDBJ%2C Best hit);ORF_evidence=XP_002439000.1 (RefSeq);InterPro=KRR1 interacting protein 1 (IPR018034),Kri1-like%2C C-terminal (IPR024626);NIAS_FLcDNA=002-107-G09,J033034J18;TENOR=Os05t0490000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	24077819	24077881	.	-	.	Parent=Os05t0490000-01
Chr05	irgsp1_rep	CDS	24076052	24077818	.	-	0	Parent=Os05t0490000-01
Chr05	irgsp1_rep	mRNA	24078058	24079845	.	+	.	ID=Os05t0490100-01;Name=Os05t0490100-01;Locus_id=Os05g0490100;Note=Similar to 60S ribosomal protein L30.;Transcript_evidence=AK120984 (DDBJ%2C Best hit);ORF_evidence=B6SYS9 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L30e (IPR000231),Ribosomal protein L7Ae/L30e/S12e/Gadd45 (IPR004038),Ribosomal protein L30e%2C conserved site (IPR022991);NIAS_FLcDNA=J023042D20;Expression=AK120984;TENOR=Os05t0490100-01;KEGG=Os05t0490100-01
Chr05	irgsp1_rep	five_prime_UTR	24078058	24078137	.	+	.	Parent=Os05t0490100-01
Chr05	irgsp1_rep	CDS	24078138	24078158	.	+	0	Parent=Os05t0490100-01
Chr05	irgsp1_rep	CDS	24078282	24078387	.	+	0	Parent=Os05t0490100-01
Chr05	irgsp1_rep	CDS	24079213	24079314	.	+	2	Parent=Os05t0490100-01
Chr05	irgsp1_rep	CDS	24079440	24079508	.	+	2	Parent=Os05t0490100-01
Chr05	irgsp1_rep	CDS	24079597	24079637	.	+	2	Parent=Os05t0490100-01
Chr05	irgsp1_rep	three_prime_UTR	24079638	24079845	.	+	.	Parent=Os05t0490100-01
Chr05	irgsp1_rep	mRNA	24078282	24079510	.	-	.	ID=Os05t0490150-00;Name=Os05t0490150-00;Locus_id=Os05g0490150;Note=Non-protein coding transcript.;Transcript_evidence=AF366453 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0490150-00
Chr05	irgsp1_rep	exon	24079440	24079510	.	-	.	Parent=Os05t0490150-00
Chr05	irgsp1_rep	exon	24079187	24079314	.	-	.	Parent=Os05t0490150-00
Chr05	irgsp1_rep	exon	24078282	24078362	.	-	.	Parent=Os05t0490150-00
Chr05	irgsp1_rep	mRNA	24081106	24087008	.	+	.	ID=Os05t0490200-01;Name=Os05t0490200-01;Locus_id=Os05g0490200;Note=Protein of unknown function DUF1692 domain containing protein.;Transcript_evidence=AK101147 (DDBJ%2C Best hit),AK105601 (DDBJ%2C Best hit);ORF_evidence=NP_001150650.1 (RefSeq);InterPro=Domain of unknown function DUF1692 (IPR012936);NIAS_FLcDNA=J033026P06,001-200-A06;TENOR=Os05t0490200-01
Chr05	irgsp1_rep	five_prime_UTR	24081106	24081316	.	+	.	Parent=Os05t0490200-01
Chr05	irgsp1_rep	CDS	24081317	24081458	.	+	0	Parent=Os05t0490200-01
Chr05	irgsp1_rep	CDS	24082292	24082365	.	+	2	Parent=Os05t0490200-01
Chr05	irgsp1_rep	CDS	24082529	24082612	.	+	0	Parent=Os05t0490200-01
Chr05	irgsp1_rep	CDS	24082693	24082773	.	+	0	Parent=Os05t0490200-01
Chr05	irgsp1_rep	CDS	24083495	24083575	.	+	0	Parent=Os05t0490200-01
Chr05	irgsp1_rep	CDS	24083694	24083786	.	+	0	Parent=Os05t0490200-01
Chr05	irgsp1_rep	CDS	24084285	24084461	.	+	0	Parent=Os05t0490200-01
Chr05	irgsp1_rep	CDS	24084545	24084612	.	+	0	Parent=Os05t0490200-01
Chr05	irgsp1_rep	CDS	24084740	24084791	.	+	1	Parent=Os05t0490200-01
Chr05	irgsp1_rep	CDS	24084893	24084946	.	+	0	Parent=Os05t0490200-01
Chr05	irgsp1_rep	CDS	24085029	24085118	.	+	0	Parent=Os05t0490200-01
Chr05	irgsp1_rep	CDS	24086050	24086116	.	+	0	Parent=Os05t0490200-01
Chr05	irgsp1_rep	CDS	24086409	24086500	.	+	2	Parent=Os05t0490200-01
Chr05	irgsp1_rep	three_prime_UTR	24086501	24087008	.	+	.	Parent=Os05t0490200-01
Chr05	irgsp1_rep	mRNA	24081464	24086776	.	+	.	ID=Os05t0490200-02;Name=Os05t0490200-02;Locus_id=Os05g0490200;Note=Similar to serologically defined breast cancer antigen NY-BR-84.;Transcript_evidence=AK073984 (DDBJ%2C Best hit);ORF_evidence=NP_001150650.1 (RefSeq);InterPro=Domain of unknown function DUF1692 (IPR012936);NIAS_FLcDNA=J033072O04;Expression=AK073984;TENOR=Os05t0490200-02;KEGG=Os05t0490200-02
Chr05	irgsp1_rep	five_prime_UTR	24081464	24082278	.	+	.	Parent=Os05t0490200-02
Chr05	irgsp1_rep	CDS	24082279	24082365	.	+	0	Parent=Os05t0490200-02
Chr05	irgsp1_rep	CDS	24082529	24082612	.	+	0	Parent=Os05t0490200-02
Chr05	irgsp1_rep	CDS	24082693	24082773	.	+	0	Parent=Os05t0490200-02
Chr05	irgsp1_rep	CDS	24083495	24083575	.	+	0	Parent=Os05t0490200-02
Chr05	irgsp1_rep	CDS	24083694	24083786	.	+	0	Parent=Os05t0490200-02
Chr05	irgsp1_rep	CDS	24084285	24084461	.	+	0	Parent=Os05t0490200-02
Chr05	irgsp1_rep	CDS	24084545	24084612	.	+	0	Parent=Os05t0490200-02
Chr05	irgsp1_rep	CDS	24084740	24084791	.	+	1	Parent=Os05t0490200-02
Chr05	irgsp1_rep	CDS	24084893	24084946	.	+	0	Parent=Os05t0490200-02
Chr05	irgsp1_rep	CDS	24085029	24085175	.	+	0	Parent=Os05t0490200-02
Chr05	irgsp1_rep	three_prime_UTR	24085176	24086116	.	+	.	Parent=Os05t0490200-02
Chr05	irgsp1_rep	three_prime_UTR	24086409	24086776	.	+	.	Parent=Os05t0490200-02
Chr05	irgsp1_rep	mRNA	24084947	24086776	.	+	.	ID=Os05t0490200-03;Name=Os05t0490200-03;Locus_id=Os05g0490200;Note=Similar to cDNA clone:J033072O04%2C full insert sequence.;Transcript_evidence=AK071895 (DDBJ%2C Best hit);ORF_evidence=B7EMZ8 (UniProt);InterPro=Domain of unknown function DUF1692 (IPR012936);NIAS_FLcDNA=J013058G08;Expression=AK071895;TENOR=Os05t0490200-03;KEGG=Os05t0490200-03
Chr05	irgsp1_rep	five_prime_UTR	24084947	24085004	.	+	.	Parent=Os05t0490200-03
Chr05	irgsp1_rep	CDS	24085005	24085175	.	+	0	Parent=Os05t0490200-03
Chr05	irgsp1_rep	three_prime_UTR	24085176	24086116	.	+	.	Parent=Os05t0490200-03
Chr05	irgsp1_rep	three_prime_UTR	24086409	24086776	.	+	.	Parent=Os05t0490200-03
Chr05	irgsp1_rep	mRNA	24089745	24091692	.	-	.	ID=Os05t0490300-01;Name=Os05t0490300-01;Locus_id=Os05g0490300;Oryzabase Gene Symbol Synonym(s)=OsFbox265%2C Os_F0584;Oryzabase Gene Name Synonym(s)=F-box protein 265;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK071818 (DDBJ%2C Best hit);ORF_evidence=B6U4I0 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023114L14;Oryzabase=17047;Expression=AK071818;TENOR=Os05t0490300-01;KEGG=Os05t0490300-01
Chr05	irgsp1_rep	five_prime_UTR	24091501	24091692	.	-	.	Parent=Os05t0490300-01
Chr05	irgsp1_rep	CDS	24091367	24091500	.	-	0	Parent=Os05t0490300-01
Chr05	irgsp1_rep	CDS	24089993	24091211	.	-	1	Parent=Os05t0490300-01
Chr05	irgsp1_rep	three_prime_UTR	24089745	24089992	.	-	.	Parent=Os05t0490300-01
Chr05	irgsp1_rep	mRNA	24103730	24106552	.	-	.	ID=Os05t0490400-01;Name=Os05t0490400-01;Locus_id=Os05g0490400;Oryzabase Gene Symbol Synonym(s)=OsSTA155;Note=Conserved hypothetical protein.;Transcript_evidence=AK069746 (DDBJ%2C Best hit);ORF_evidence=B8AZH9 (UniProt);NIAS_FLcDNA=J023030O13;Oryzabase=19442;Expression=AK069746;TENOR=Os05t0490400-01;KEGG=Os05t0490400-01
Chr05	irgsp1_rep	five_prime_UTR	24106101	24106552	.	-	.	Parent=Os05t0490400-01
Chr05	irgsp1_rep	five_prime_UTR	24105722	24105754	.	-	.	Parent=Os05t0490400-01
Chr05	irgsp1_rep	CDS	24104180	24105721	.	-	0	Parent=Os05t0490400-01
Chr05	irgsp1_rep	three_prime_UTR	24103730	24104179	.	-	.	Parent=Os05t0490400-01
Chr05	irgsp1_rep	mRNA	24107393	24110143	.	-	.	ID=Os05t0490500-01;Name=Os05t0490500-01;Locus_id=Os05g0490500;Note=Conserved hypothetical protein.;Transcript_evidence=AK066923 (DDBJ%2C Best hit);ORF_evidence=B9FKW4 (UniProt);NIAS_FLcDNA=J013089G08;TENOR=Os05t0490500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	24110142	24110143	.	-	.	Parent=Os05t0490500-01
Chr05	irgsp1_rep	CDS	24110085	24110141	.	-	0	Parent=Os05t0490500-01
Chr05	irgsp1_rep	CDS	24109280	24109436	.	-	0	Parent=Os05t0490500-01
Chr05	irgsp1_rep	CDS	24108442	24108641	.	-	2	Parent=Os05t0490500-01
Chr05	irgsp1_rep	CDS	24107820	24108056	.	-	0	Parent=Os05t0490500-01
Chr05	irgsp1_rep	CDS	24107589	24107702	.	-	0	Parent=Os05t0490500-01
Chr05	irgsp1_rep	three_prime_UTR	24107393	24107588	.	-	.	Parent=Os05t0490500-01
Chr05	irgsp1_rep	mRNA	24110841	24114828	.	-	.	ID=Os05t0490600-00;Name=Os05t0490600-00;Locus_id=Os05g0490600;Oryzabase Gene Symbol Synonym(s)=OsMyb5%2C OSMYB5%2C MYB5;Oryzabase Gene Name Synonym(s)=myb transcription factor 5%2C transcription factor MYB5;Note=OSMYB5.;Transcript_evidence=D88621 (DDBJ%2C Best hit);ORF_evidence=A2Y604 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);Oryzabase=10248;Expression=D88621;TENOR=Os05t0490600-00;KEGG=Os05t0490600-00
Chr05	irgsp1_rep	five_prime_UTR	24114571	24114828	.	-	.	Parent=Os05t0490600-00
Chr05	irgsp1_rep	five_prime_UTR	24113326	24113326	.	-	.	Parent=Os05t0490600-00
Chr05	irgsp1_rep	CDS	24112954	24113325	.	-	0	Parent=Os05t0490600-00
Chr05	irgsp1_rep	CDS	24111868	24112231	.	-	0	Parent=Os05t0490600-00
Chr05	irgsp1_rep	CDS	24111495	24111767	.	-	2	Parent=Os05t0490600-00
Chr05	irgsp1_rep	CDS	24111132	24111299	.	-	2	Parent=Os05t0490600-00
Chr05	irgsp1_rep	CDS	24111034	24111041	.	-	2	Parent=Os05t0490600-00
Chr05	irgsp1_rep	three_prime_UTR	24110841	24111033	.	-	.	Parent=Os05t0490600-00
Chr05	irgsp1_rep	mRNA	24115647	24121667	.	-	.	ID=Os05t0490700-01;Name=Os05t0490700-01;Locus_id=Os05g0490700;RAP-DB Gene Symbol Synonym(s)=SDG728%2C OsSUVH8;RAP-DB Gene Name Synonym(s)=SUVH Histone Methyltransferase 8;Oryzabase Gene Symbol Synonym(s)=OsSET22%2C SDG728%2C OsSUVH8;Oryzabase Gene Name Synonym(s)=SET protein 22%2C SUVH Histone Methyltransferase 8;Note=Rice Su(var)3-9 homolog (SUVH)%2C Histone methyltransferase%2C Retrotransposon repression;Transcript_evidence=AK069035;ORF_evidence=Q6F322;GO=Biological Process: histone methylation (GO:0016571),Biological Process: histone lysine methylation (GO:0034968),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: histone-lysine N-methyltransferase activity (GO:0018024),Cellular Component: nucleus (GO:0005634);InterPro=SRA-YDG superfamily (IPR036987),PUA-like superfamily (IPR015947),Histone H3-K9 methyltransferase%2C plant (IPR025794),SRA-YDG (IPR003105),Pre-SET domain (IPR007728),SET domain (IPR001214),Post-SET domain (IPR003616);NIAS_FLcDNA=J023004N15;Manual Curation=October 1%2C 2020;Literature_PMID=20566579;Oryzabase=13387;Expression=AK069035;TENOR=Os05t0490700-01;KEGG=Os05t0490700-01
Chr05	irgsp1_rep	five_prime_UTR	24121409	24121667	.	-	.	Parent=Os05t0490700-01
Chr05	irgsp1_rep	five_prime_UTR	24118896	24118914	.	-	.	Parent=Os05t0490700-01
Chr05	irgsp1_rep	CDS	24116877	24118895	.	-	0	Parent=Os05t0490700-01
Chr05	irgsp1_rep	three_prime_UTR	24116825	24116876	.	-	.	Parent=Os05t0490700-01
Chr05	irgsp1_rep	three_prime_UTR	24115647	24116017	.	-	.	Parent=Os05t0490700-01
Chr05	irgsp1_rep	mRNA	24119038	24121645	.	-	.	ID=Os05t0490700-02;Name=Os05t0490700-02;Locus_id=Os05g0490700;Oryzabase Gene Symbol Synonym(s)=OsSET22%2C SDG728%2C OsSUVH8;Oryzabase Gene Name Synonym(s)=SET protein 22%2C SUVH Histone Methyltransferase 8;Note=Hypothetical gene.;Transcript_evidence=AK073029 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023146M03;Oryzabase=13387;Expression=AK073029;TENOR=Os05t0490700-02;KEGG=Os05t0490700-02
Chr05	irgsp1_rep	five_prime_UTR	24121644	24121645	.	-	.	Parent=Os05t0490700-02
Chr05	irgsp1_rep	CDS	24121401	24121643	.	-	0	Parent=Os05t0490700-02
Chr05	irgsp1_rep	three_prime_UTR	24119038	24121400	.	-	.	Parent=Os05t0490700-02
Chr05	irgsp1_rep	mRNA	24122525	24126672	.	-	.	ID=Os05t0490800-01;Name=Os05t0490800-01;Locus_id=Os05g0490800;Note=Similar to Proteasome subunit alpha type.;Transcript_evidence=AK240917 (DDBJ%2C Best hit);ORF_evidence=B8AZI1 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603),Cellular Component: proteasome core complex (GO:0005839),Cellular Component: proteasome core complex%2C alpha-subunit complex (GO:0019773),Molecular Function: endopeptidase activity (GO:0004175),Molecular Function: threonine-type endopeptidase activity (GO:0004298);InterPro=Proteasome%2C alpha-subunit%2C conserved site (IPR000426),Proteasome%2C subunit alpha/beta (IPR001353),Proteasome A-type subunit (IPR023332);NIAS_FLcDNA=J065037L19;TENOR=Os05t0490800-01;KEGG=Os05t0490800-01 (EC:3.4.25.1)
Chr05	irgsp1_rep	five_prime_UTR	24126538	24126672	.	-	.	Parent=Os05t0490800-01
Chr05	irgsp1_rep	five_prime_UTR	24125682	24125727	.	-	.	Parent=Os05t0490800-01
Chr05	irgsp1_rep	CDS	24125578	24125681	.	-	0	Parent=Os05t0490800-01
Chr05	irgsp1_rep	CDS	24125451	24125490	.	-	1	Parent=Os05t0490800-01
Chr05	irgsp1_rep	CDS	24125275	24125358	.	-	0	Parent=Os05t0490800-01
Chr05	irgsp1_rep	CDS	24124920	24124993	.	-	0	Parent=Os05t0490800-01
Chr05	irgsp1_rep	CDS	24124762	24124848	.	-	1	Parent=Os05t0490800-01
Chr05	irgsp1_rep	CDS	24124600	24124684	.	-	1	Parent=Os05t0490800-01
Chr05	irgsp1_rep	CDS	24124322	24124368	.	-	0	Parent=Os05t0490800-01
Chr05	irgsp1_rep	CDS	24123488	24123553	.	-	1	Parent=Os05t0490800-01
Chr05	irgsp1_rep	CDS	24122901	24122991	.	-	1	Parent=Os05t0490800-01
Chr05	irgsp1_rep	CDS	24122735	24122806	.	-	0	Parent=Os05t0490800-01
Chr05	irgsp1_rep	three_prime_UTR	24122525	24122734	.	-	.	Parent=Os05t0490800-01
Chr05	irgsp1_rep	mRNA	24127396	24128452	.	-	.	ID=Os05t0490900-01;Name=Os05t0490900-01;Locus_id=Os05g0490900;Note=Conserved hypothetical protein.;Transcript_evidence=AK111382 (DDBJ%2C Best hit);ORF_evidence=B8AZI2 (UniProt);NIAS_FLcDNA=002-182-B08;Expression=AK111382;TENOR=Os05t0490900-01;KEGG=Os05t0490900-01
Chr05	irgsp1_rep	five_prime_UTR	24128374	24128452	.	-	.	Parent=Os05t0490900-01
Chr05	irgsp1_rep	CDS	24128050	24128373	.	-	0	Parent=Os05t0490900-01
Chr05	irgsp1_rep	CDS	24127857	24127973	.	-	0	Parent=Os05t0490900-01
Chr05	irgsp1_rep	CDS	24127687	24127764	.	-	0	Parent=Os05t0490900-01
Chr05	irgsp1_rep	three_prime_UTR	24127396	24127686	.	-	.	Parent=Os05t0490900-01
Chr05	irgsp1_rep	mRNA	24130239	24130977	.	-	.	ID=Os05t0491000-01;Name=Os05t0491000-01;Locus_id=Os05g0491000;CGSNL Gene Symbol=CML9;CGSNL Gene Name=CALMODULIN-LIKE PROTEIN 9;Oryzabase Gene Symbol Synonym(s)=OsCML9;Oryzabase Gene Name Synonym(s)=calmodulin-like protein 9;Note=EF-Hand type domain containing protein.;Transcript_evidence=AK105230 (DDBJ%2C Best hit);ORF_evidence=A2Y608 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249);NIAS_FLcDNA=001-111-F03;Oryzabase=10521;Expression=AK105230;TENOR=Os05t0491000-01;KEGG=Os05t0491000-01
Chr05	irgsp1_rep	five_prime_UTR	24130892	24130977	.	-	.	Parent=Os05t0491000-01
Chr05	irgsp1_rep	CDS	24130816	24130891	.	-	0	Parent=Os05t0491000-01
Chr05	irgsp1_rep	CDS	24130357	24130748	.	-	2	Parent=Os05t0491000-01
Chr05	irgsp1_rep	three_prime_UTR	24130239	24130356	.	-	.	Parent=Os05t0491000-01
Chr05	irgsp1_rep	mRNA	24132581	24134897	.	-	.	ID=Os05t0491100-01;Name=Os05t0491100-01;Locus_id=Os05g0491100;CGSNL Gene Symbol=CALA;CGSNL Gene Name=CALMODULIN A;Oryzabase Gene Symbol Synonym(s)=CALa*%2C Cal1%2C CaM-2%2C CAM2%2C CAM%2C OsCaM2%2C OsCam2%2C OsCaM1%2C CaM1;Oryzabase Gene Name Synonym(s)=Calmodulin-1%2C Calmodulin-a%2C Calmodulin-2%2C calmodulin 2;Note=Similar to Calmodulin.;Transcript_evidence=AK121606 (DDBJ%2C Best hit);ORF_evidence=Q6F332 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J033042G12;Oryzabase=642;TENOR=Os05t0491100-01
Chr05	irgsp1_rep	five_prime_UTR	24134753	24134897	.	-	.	Parent=Os05t0491100-01
Chr05	irgsp1_rep	CDS	24134677	24134752	.	-	0	Parent=Os05t0491100-01
Chr05	irgsp1_rep	CDS	24132861	24133234	.	-	2	Parent=Os05t0491100-01
Chr05	irgsp1_rep	three_prime_UTR	24132581	24132860	.	-	.	Parent=Os05t0491100-01
Chr05	irgsp1_rep	mRNA	24132582	24134853	.	-	.	ID=Os05t0491100-02;Name=Os05t0491100-02;Locus_id=Os05g0491100;CGSNL Gene Symbol=CALA;CGSNL Gene Name=CALMODULIN A;Oryzabase Gene Symbol Synonym(s)=CALa*%2C Cal1%2C CaM-2%2C CAM2%2C CAM%2C OsCaM2%2C OsCam2%2C OsCaM1%2C CaM1;Oryzabase Gene Name Synonym(s)=Calmodulin-1%2C Calmodulin-a%2C Calmodulin-2%2C calmodulin 2;Note=Similar to Calmodulin.;Transcript_evidence=AK119167 (DDBJ%2C Best hit),AK059534 (DDBJ%2C Best hit);ORF_evidence=Q6F332 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=001-036-F05,001-029-D11;Oryzabase=642;Expression=AK059534;TENOR=Os05t0491100-02;KEGG=Os05t0491100-02;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	24134753	24134853	.	-	.	Parent=Os05t0491100-02
Chr05	irgsp1_rep	CDS	24134677	24134752	.	-	0	Parent=Os05t0491100-02
Chr05	irgsp1_rep	CDS	24132861	24133234	.	-	2	Parent=Os05t0491100-02
Chr05	irgsp1_rep	three_prime_UTR	24132582	24132860	.	-	.	Parent=Os05t0491100-02
Chr05	irgsp1_rep	mRNA	24137727	24141002	.	-	.	ID=Os05t0491200-01;Name=Os05t0491200-01;Locus_id=Os05g0491200;Oryzabase Gene Symbol Synonym(s)=akin-b%2C akin-beta;Oryzabase Gene Name Synonym(s)=b-subunit of SnRK1%2C beta-subunit of SnRK1;Note=Similar to SNF1 kinase complex anchoring protein (Fragment).;Transcript_evidence=AK068637 (DDBJ%2C Best hit);ORF_evidence=Q18PR8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=5-AMP-activated protein kinase%2C beta subunit%2C interaction domain (IPR006828);NIAS_FLcDNA=J013157L19;Oryzabase=11218;Expression=AK068637;TENOR=Os05t0491200-01;KEGG=Os05t0491200-01
Chr05	irgsp1_rep	five_prime_UTR	24140610	24141002	.	-	.	Parent=Os05t0491200-01
Chr05	irgsp1_rep	CDS	24140436	24140609	.	-	0	Parent=Os05t0491200-01
Chr05	irgsp1_rep	CDS	24138669	24138853	.	-	0	Parent=Os05t0491200-01
Chr05	irgsp1_rep	CDS	24138412	24138574	.	-	1	Parent=Os05t0491200-01
Chr05	irgsp1_rep	CDS	24137936	24138286	.	-	0	Parent=Os05t0491200-01
Chr05	irgsp1_rep	three_prime_UTR	24137727	24137935	.	-	.	Parent=Os05t0491200-01
Chr05	irgsp1_rep	mRNA	24137674	24140854	.	-	.	ID=Os05t0491200-02;Name=Os05t0491200-02;Locus_id=Os05g0491200;Oryzabase Gene Symbol Synonym(s)=akin-b%2C akin-beta;Oryzabase Gene Name Synonym(s)=b-subunit of SnRK1%2C beta-subunit of SnRK1;Note=Similar to SNF1 kinase complex anchoring protein (Fragment).;Transcript_evidence=AK071229 (DDBJ%2C Best hit);ORF_evidence=Q18PR8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=5-AMP-activated protein kinase%2C beta subunit%2C interaction domain (IPR006828);NIAS_FLcDNA=J023086K16;Oryzabase=11218;Expression=AK071229;TENOR=Os05t0491200-02;KEGG=Os05t0491200-02
Chr05	irgsp1_rep	five_prime_UTR	24140610	24140854	.	-	.	Parent=Os05t0491200-02
Chr05	irgsp1_rep	CDS	24140436	24140609	.	-	0	Parent=Os05t0491200-02
Chr05	irgsp1_rep	CDS	24138669	24138853	.	-	0	Parent=Os05t0491200-02
Chr05	irgsp1_rep	CDS	24138412	24138574	.	-	1	Parent=Os05t0491200-02
Chr05	irgsp1_rep	CDS	24137936	24138286	.	-	0	Parent=Os05t0491200-02
Chr05	irgsp1_rep	three_prime_UTR	24137674	24137935	.	-	.	Parent=Os05t0491200-02
Chr05	irgsp1_rep	mRNA	24149336	24151542	.	-	.	ID=Os05t0491400-01;Name=Os05t0491400-01;Locus_id=Os05g0491400;Note=Similar to LRR protein.;Transcript_evidence=AK107986 (DDBJ%2C Best hit);ORF_evidence=C6ZRZ5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=002-135-F01;Oryzabase=22028;Expression=AK107986;TENOR=Os05t0491400-01;KEGG=Os05t0491400-01
Chr05	irgsp1_rep	five_prime_UTR	24151479	24151542	.	-	.	Parent=Os05t0491400-01
Chr05	irgsp1_rep	CDS	24151249	24151478	.	-	0	Parent=Os05t0491400-01
Chr05	irgsp1_rep	CDS	24150727	24150798	.	-	1	Parent=Os05t0491400-01
Chr05	irgsp1_rep	CDS	24150347	24150490	.	-	1	Parent=Os05t0491400-01
Chr05	irgsp1_rep	CDS	24150067	24150138	.	-	1	Parent=Os05t0491400-01
Chr05	irgsp1_rep	CDS	24149877	24149948	.	-	1	Parent=Os05t0491400-01
Chr05	irgsp1_rep	CDS	24149572	24149632	.	-	1	Parent=Os05t0491400-01
Chr05	irgsp1_rep	three_prime_UTR	24149336	24149571	.	-	.	Parent=Os05t0491400-01
Chr05	irgsp1_rep	mRNA	24154090	24158054	.	-	.	ID=Os05t0491500-01;Name=Os05t0491500-01;Locus_id=Os05g0491500;Note=Similar to Transfactor-like protein.;Transcript_evidence=AK061987 (DDBJ%2C Best hit);ORF_evidence=Q5IWM2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=001-043-B07;Expression=AK061987;TENOR=Os05t0491500-01;KEGG=Os05t0491500-01
Chr05	irgsp1_rep	five_prime_UTR	24157739	24158054	.	-	.	Parent=Os05t0491500-01
Chr05	irgsp1_rep	five_prime_UTR	24156554	24156624	.	-	.	Parent=Os05t0491500-01
Chr05	irgsp1_rep	five_prime_UTR	24156413	24156419	.	-	.	Parent=Os05t0491500-01
Chr05	irgsp1_rep	CDS	24156205	24156412	.	-	0	Parent=Os05t0491500-01
Chr05	irgsp1_rep	CDS	24155546	24155622	.	-	2	Parent=Os05t0491500-01
Chr05	irgsp1_rep	CDS	24155419	24155461	.	-	0	Parent=Os05t0491500-01
Chr05	irgsp1_rep	CDS	24155242	24155299	.	-	2	Parent=Os05t0491500-01
Chr05	irgsp1_rep	CDS	24154971	24155040	.	-	1	Parent=Os05t0491500-01
Chr05	irgsp1_rep	CDS	24154457	24154774	.	-	0	Parent=Os05t0491500-01
Chr05	irgsp1_rep	three_prime_UTR	24154090	24154456	.	-	.	Parent=Os05t0491500-01
Chr05	irgsp1_rep	mRNA	24153733	24158054	.	-	.	ID=Os05t0491500-02;Name=Os05t0491500-02;Locus_id=Os05g0491500;Note=Similar to Transfactor-like protein.;Transcript_evidence=AK069306 (DDBJ%2C Best hit);ORF_evidence=Q5IWM2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J023012H08;Expression=AK069306;TENOR=Os05t0491500-02;KEGG=Os05t0491500-02
Chr05	irgsp1_rep	five_prime_UTR	24157739	24158054	.	-	.	Parent=Os05t0491500-02
Chr05	irgsp1_rep	five_prime_UTR	24156413	24156419	.	-	.	Parent=Os05t0491500-02
Chr05	irgsp1_rep	CDS	24156205	24156412	.	-	0	Parent=Os05t0491500-02
Chr05	irgsp1_rep	CDS	24155546	24155622	.	-	2	Parent=Os05t0491500-02
Chr05	irgsp1_rep	CDS	24155419	24155461	.	-	0	Parent=Os05t0491500-02
Chr05	irgsp1_rep	CDS	24155242	24155299	.	-	2	Parent=Os05t0491500-02
Chr05	irgsp1_rep	CDS	24154971	24155040	.	-	1	Parent=Os05t0491500-02
Chr05	irgsp1_rep	CDS	24154457	24154774	.	-	0	Parent=Os05t0491500-02
Chr05	irgsp1_rep	three_prime_UTR	24153733	24154456	.	-	.	Parent=Os05t0491500-02
Chr05	irgsp1_rep	mRNA	24171334	24171979	.	-	.	ID=Os05t0491700-00;Name=Os05t0491700-00;Locus_id=Os05g0491700;Oryzabase Gene Symbol Synonym(s)=OsVQ20;Oryzabase Gene Name Synonym(s)=VQ motif-containing protein 20;Note=VQ domain containing protein.;Transcript_evidence=EU966251 (DDBJ);ORF_evidence=NP_001055911.2 (RefSeq);InterPro=VQ (IPR008889);Oryzabase=13636;TENOR=Os05t0491700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	24171901	24171979	.	-	.	Parent=Os05t0491700-00
Chr05	irgsp1_rep	CDS	24171334	24171900	.	-	0	Parent=Os05t0491700-00
Chr05	irgsp1_rep	mRNA	24176089	24178204	.	+	.	ID=Os05t0491800-00;Name=Os05t0491800-00;Locus_id=Os05g0491800;Note=Hypothetical protein.;Transcript_evidence=tplb0061j19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0491800-00
Chr05	irgsp1_rep	five_prime_UTR	24176089	24176178	.	+	.	Parent=Os05t0491800-00
Chr05	irgsp1_rep	five_prime_UTR	24176303	24176441	.	+	.	Parent=Os05t0491800-00
Chr05	irgsp1_rep	five_prime_UTR	24176544	24176707	.	+	.	Parent=Os05t0491800-00
Chr05	irgsp1_rep	five_prime_UTR	24176816	24176928	.	+	.	Parent=Os05t0491800-00
Chr05	irgsp1_rep	CDS	24176929	24176933	.	+	0	Parent=Os05t0491800-00
Chr05	irgsp1_rep	CDS	24177025	24177166	.	+	1	Parent=Os05t0491800-00
Chr05	irgsp1_rep	CDS	24177292	24177444	.	+	0	Parent=Os05t0491800-00
Chr05	irgsp1_rep	CDS	24177523	24178167	.	+	0	Parent=Os05t0491800-00
Chr05	irgsp1_rep	three_prime_UTR	24178168	24178204	.	+	.	Parent=Os05t0491800-00
Chr05	irgsp1_rep	mRNA	24176299	24178442	.	-	.	ID=Os05t0491900-00;Name=Os05t0491900-00;Locus_id=Os05g0491900;CGSNL Gene Symbol=CDPK14;CGSNL Gene Name=CALCIUM-DEPENDENT PROTEIN KINASE 14;Oryzabase Gene Symbol Synonym(s)=OsCDPK14%2C OsCPK14;Oryzabase Gene Name Synonym(s)=calcium-dependent protein kinase;Note=Hypothetical conserved gene.;Transcript_evidence=BT040152 (DDBJ);ORF_evidence=Q6F339 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Calcium-binding EF-hand (IPR002048),Protein kinase-like domain (IPR011009),EF-hand-like domain (IPR011992),Serine/threonine-protein kinase-like domain (IPR017442),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);Oryzabase=8065;TENOR=Os05t0491900-00;KEGG=Os05t0491900-00
Chr05	irgsp1_rep	CDS	24177525	24178442	.	-	0	Parent=Os05t0491900-00
Chr05	irgsp1_rep	CDS	24177250	24177446	.	-	0	Parent=Os05t0491900-00
Chr05	irgsp1_rep	CDS	24177025	24177122	.	-	1	Parent=Os05t0491900-00
Chr05	irgsp1_rep	CDS	24176818	24176933	.	-	2	Parent=Os05t0491900-00
Chr05	irgsp1_rep	CDS	24176542	24176709	.	-	0	Parent=Os05t0491900-00
Chr05	irgsp1_rep	CDS	24176299	24176439	.	-	0	Parent=Os05t0491900-00
Chr05	irgsp1_rep	mRNA	24180216	24182268	.	+	.	ID=Os05t0492000-00;Name=Os05t0492000-00;Locus_id=Os05g0492000;CGSNL Gene Symbol=BZIP43;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 43;Oryzabase Gene Symbol Synonym(s)=OsbZIP43;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 43;Note=Similar to BZIP transcription factor.;Transcript_evidence=FP097013 (DDBJ);ORF_evidence=E9N3N2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);Oryzabase=10128;TENOR=Os05t0492000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	24180216	24180354	.	+	.	Parent=Os05t0492000-00
Chr05	irgsp1_rep	CDS	24180355	24180420	.	+	0	Parent=Os05t0492000-00
Chr05	irgsp1_rep	CDS	24180563	24180637	.	+	0	Parent=Os05t0492000-00
Chr05	irgsp1_rep	CDS	24180716	24180775	.	+	0	Parent=Os05t0492000-00
Chr05	irgsp1_rep	CDS	24180902	24180979	.	+	0	Parent=Os05t0492000-00
Chr05	irgsp1_rep	CDS	24181054	24181105	.	+	0	Parent=Os05t0492000-00
Chr05	irgsp1_rep	CDS	24181316	24181587	.	+	2	Parent=Os05t0492000-00
Chr05	irgsp1_rep	CDS	24181700	24181942	.	+	0	Parent=Os05t0492000-00
Chr05	irgsp1_rep	CDS	24182041	24182187	.	+	0	Parent=Os05t0492000-00
Chr05	irgsp1_rep	three_prime_UTR	24182188	24182268	.	+	.	Parent=Os05t0492000-00
Chr05	irgsp1_rep	mRNA	24183266	24189721	.	-	.	ID=Os05t0492100-01;Name=Os05t0492100-01;Locus_id=Os05g0492100;Note=Hypothetical protein.;Transcript_evidence=AK103698 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033136K06;Expression=AK103698;TENOR=Os05t0492100-01;KEGG=Os05t0492100-01
Chr05	irgsp1_rep	five_prime_UTR	24189532	24189721	.	-	.	Parent=Os05t0492100-01
Chr05	irgsp1_rep	five_prime_UTR	24187845	24187905	.	-	.	Parent=Os05t0492100-01
Chr05	irgsp1_rep	five_prime_UTR	24185751	24187753	.	-	.	Parent=Os05t0492100-01
Chr05	irgsp1_rep	five_prime_UTR	24185525	24185663	.	-	.	Parent=Os05t0492100-01
Chr05	irgsp1_rep	five_prime_UTR	24185143	24185408	.	-	.	Parent=Os05t0492100-01
Chr05	irgsp1_rep	CDS	24184675	24185142	.	-	0	Parent=Os05t0492100-01
Chr05	irgsp1_rep	three_prime_UTR	24184501	24184674	.	-	.	Parent=Os05t0492100-01
Chr05	irgsp1_rep	three_prime_UTR	24184307	24184395	.	-	.	Parent=Os05t0492100-01
Chr05	irgsp1_rep	three_prime_UTR	24184183	24184237	.	-	.	Parent=Os05t0492100-01
Chr05	irgsp1_rep	three_prime_UTR	24183646	24184057	.	-	.	Parent=Os05t0492100-01
Chr05	irgsp1_rep	three_prime_UTR	24183266	24183426	.	-	.	Parent=Os05t0492100-01
Chr05	irgsp1_rep	mRNA	24184504	24189203	.	+	.	ID=Os05t0492200-01;Name=Os05t0492200-01;Locus_id=Os05g0492200;Oryzabase Gene Symbol Synonym(s)=YR1%2C YR7%2C YR11%2C YR20%2C YR22%2C YR24;Note=NB-ARC domain containing protein.;Transcript_evidence=AK243033 (DDBJ%2C Best hit);ORF_evidence=Q8LL82 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: protein binding (GO:0005515),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),Leucine-rich repeat (IPR001611),NB-ARC (IPR002182);NIAS_FLcDNA=J100005E18;Oryzabase=15175;TENOR=Os05t0492200-01;KEGG=Os05t0492200-01
Chr05	irgsp1_rep	five_prime_UTR	24184504	24184534	.	+	.	Parent=Os05t0492200-01
Chr05	irgsp1_rep	CDS	24184535	24187909	.	+	0	Parent=Os05t0492200-01
Chr05	irgsp1_rep	three_prime_UTR	24187910	24187934	.	+	.	Parent=Os05t0492200-01
Chr05	irgsp1_rep	three_prime_UTR	24188911	24189203	.	+	.	Parent=Os05t0492200-01
Chr05	irgsp1_rep	mRNA	24190339	24191689	.	+	.	ID=Os05t0492300-00;Name=Os05t0492300-00;Locus_id=Os05g0492300;Note=Conserved hypothetical protein.;Transcript_evidence=AK369990 (DDBJ);ORF_evidence=NP_001176293.1 (RefSeq);TENOR=Os05t0492300-00
Chr05	irgsp1_rep	CDS	24190339	24190827	.	+	0	Parent=Os05t0492300-00
Chr05	irgsp1_rep	three_prime_UTR	24190828	24191689	.	+	.	Parent=Os05t0492300-00
Chr05	irgsp1_rep	mRNA	24194658	24202634	.	-	.	ID=Os05t0492500-01;Name=Os05t0492500-01;Locus_id=Os05g0492500;Note=Hypothetical protein.;Transcript_evidence=AK065279 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013002L17;Expression=AK065279;TENOR=Os05t0492500-01;KEGG=Os05t0492500-01
Chr05	irgsp1_rep	five_prime_UTR	24202465	24202634	.	-	.	Parent=Os05t0492500-01
Chr05	irgsp1_rep	five_prime_UTR	24198790	24200655	.	-	.	Parent=Os05t0492500-01
Chr05	irgsp1_rep	CDS	24198445	24198789	.	-	0	Parent=Os05t0492500-01
Chr05	irgsp1_rep	CDS	24197513	24197542	.	-	0	Parent=Os05t0492500-01
Chr05	irgsp1_rep	three_prime_UTR	24197108	24197512	.	-	.	Parent=Os05t0492500-01
Chr05	irgsp1_rep	three_prime_UTR	24196810	24196993	.	-	.	Parent=Os05t0492500-01
Chr05	irgsp1_rep	three_prime_UTR	24195645	24195773	.	-	.	Parent=Os05t0492500-01
Chr05	irgsp1_rep	three_prime_UTR	24194658	24194921	.	-	.	Parent=Os05t0492500-01
Chr05	irgsp1_rep	mRNA	24197060	24200694	.	+	.	ID=Os05t0492600-00;Name=Os05t0492600-00;Locus_id=Os05g0492600;Oryzabase Gene Symbol Synonym(s)=YR48;Note=Similar to NBS-LRR type resistance protein (Fragment).;Transcript_evidence=AF456247 (DDBJ%2C Best hit);ORF_evidence=B7F9W6 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);Oryzabase=15184;Expression=AF456247;TENOR=Os05t0492600-00;KEGG=Os05t0492600-00
Chr05	irgsp1_rep	five_prime_UTR	24197060	24197213	.	+	.	Parent=Os05t0492600-00
Chr05	irgsp1_rep	CDS	24197214	24199100	.	+	0	Parent=Os05t0492600-00
Chr05	irgsp1_rep	three_prime_UTR	24199101	24200694	.	+	.	Parent=Os05t0492600-00
Chr05	irgsp1_rep	mRNA	24230695	24234784	.	+	.	ID=Os05t0493100-01;Name=Os05t0493100-01;Locus_id=Os05g0493100;Note=Similar to KI domain interacting kinase 1.;Transcript_evidence=AK110420 (DDBJ%2C Best hit);ORF_evidence=B8AZI8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Gnk2-homologous domain (IPR002902),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-166-A03;Expression=AK110420;TENOR=Os05t0493100-01;KEGG=Os05t0493100-01
Chr05	irgsp1_rep	five_prime_UTR	24230695	24230791	.	+	.	Parent=Os05t0493100-01
Chr05	irgsp1_rep	CDS	24230792	24231650	.	+	0	Parent=Os05t0493100-01
Chr05	irgsp1_rep	CDS	24232217	24232363	.	+	2	Parent=Os05t0493100-01
Chr05	irgsp1_rep	CDS	24232457	24232587	.	+	2	Parent=Os05t0493100-01
Chr05	irgsp1_rep	CDS	24232728	24232938	.	+	0	Parent=Os05t0493100-01
Chr05	irgsp1_rep	CDS	24233026	24233263	.	+	2	Parent=Os05t0493100-01
Chr05	irgsp1_rep	CDS	24233949	24234090	.	+	1	Parent=Os05t0493100-01
Chr05	irgsp1_rep	CDS	24234208	24234522	.	+	0	Parent=Os05t0493100-01
Chr05	irgsp1_rep	three_prime_UTR	24234523	24234784	.	+	.	Parent=Os05t0493100-01
Chr05	irgsp1_rep	mRNA	24230962	24231613	.	-	.	ID=Os05t0493133-00;Name=Os05t0493133-00;Locus_id=Os05g0493133;Note=Hypothetical protein.;Transcript_evidence=L14835 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0493133-00
Chr05	irgsp1_rep	CDS	24230963	24231613	.	-	0	Parent=Os05t0493133-00
Chr05	irgsp1_rep	three_prime_UTR	24230962	24230962	.	-	.	Parent=Os05t0493133-00
Chr05	irgsp1_rep	mRNA	24237097	24237700	.	-	.	ID=Os05t0493166-00;Name=Os05t0493166-00;Locus_id=Os05g0493166;Note=Hypothetical protein.;Transcript_evidence=BT062660 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0493166-00
Chr05	irgsp1_rep	five_prime_UTR	24237699	24237700	.	-	.	Parent=Os05t0493166-00
Chr05	irgsp1_rep	CDS	24237407	24237698	.	-	0	Parent=Os05t0493166-00
Chr05	irgsp1_rep	CDS	24237322	24237329	.	-	2	Parent=Os05t0493166-00
Chr05	irgsp1_rep	three_prime_UTR	24237097	24237321	.	-	.	Parent=Os05t0493166-00
Chr05	irgsp1_rep	mRNA	24240403	24243476	.	-	.	ID=Os05t0493400-01;Name=Os05t0493400-01;Locus_id=Os05g0493400;Note=Similar to Cyclin box (Fragment).;Transcript_evidence=AK107486 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-129-C09;Expression=AK107486;TENOR=Os05t0493400-01;KEGG=Os05t0493400-01
Chr05	irgsp1_rep	five_prime_UTR	24240933	24243476	.	-	.	Parent=Os05t0493400-01
Chr05	irgsp1_rep	CDS	24240453	24240932	.	-	0	Parent=Os05t0493400-01
Chr05	irgsp1_rep	three_prime_UTR	24240403	24240452	.	-	.	Parent=Os05t0493400-01
Chr05	irgsp1_rep	mRNA	24240791	24243402	.	+	.	ID=Os05t0493500-00;Name=Os05t0493500-00;Locus_id=Os05g0493500;CGSNL Gene Symbol=CYCB1%3B2;CGSNL Gene Name=CYCLIN-B1-2;Oryzabase Gene Symbol Synonym(s)=CycB1%3B2%2C CycB1%3Bos%3B2%2C Orysa%3BCycB1%3B2;Oryzabase Gene Name Synonym(s)=B-type cyclin 1%3B2;Note=Similar to Cyclin-B1-5.;Transcript_evidence=U10078 (DDBJ);ORF_evidence=Q0DH40 (UniProt);GO=Biological Process: regulation of cyclin-dependent protein kinase activity (GO:0000079),Biological Process: regulation of cell cycle (GO:0051726),Cellular Component: nucleus (GO:0005634),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin%2C C-terminal (IPR004367),Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763),Cyclin A/B/D/E (IPR014400);Oryzabase=13261;TENOR=Os05t0493500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	24240791	24240982	.	+	0	Parent=Os05t0493500-00
Chr05	irgsp1_rep	CDS	24241376	24241473	.	+	0	Parent=Os05t0493500-00
Chr05	irgsp1_rep	CDS	24241595	24241694	.	+	1	Parent=Os05t0493500-00
Chr05	irgsp1_rep	CDS	24241790	24242017	.	+	0	Parent=Os05t0493500-00
Chr05	irgsp1_rep	CDS	24242108	24242233	.	+	0	Parent=Os05t0493500-00
Chr05	irgsp1_rep	CDS	24242320	24242568	.	+	0	Parent=Os05t0493500-00
Chr05	irgsp1_rep	CDS	24242682	24242840	.	+	0	Parent=Os05t0493500-00
Chr05	irgsp1_rep	CDS	24242943	24243121	.	+	0	Parent=Os05t0493500-00
Chr05	irgsp1_rep	CDS	24243270	24243402	.	+	1	Parent=Os05t0493500-00
Chr05	irgsp1_rep	mRNA	24244154	24245932	.	-	.	ID=Os05t0493600-00;Name=Os05t0493600-00;Locus_id=Os05g0493600;Note=Similar to indole-3-acetate beta-glucosyltransferase.;Transcript_evidence=BT038690 (DDBJ);ORF_evidence=NP_001151875.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os05t0493600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	24245278	24245932	.	-	0	Parent=Os05t0493600-00
Chr05	irgsp1_rep	CDS	24244154	24244776	.	-	2	Parent=Os05t0493600-00
Chr05	irgsp1_rep	mRNA	24254630	24256914	.	+	.	ID=Os05t0493800-01;Name=Os05t0493800-01;Locus_id=Os05g0493800;Note=Similar to nodulin-like protein.;Transcript_evidence=AK110589 (DDBJ%2C Best hit);ORF_evidence=NP_001150619.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=002-168-F05;TENOR=Os05t0493800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	24254630	24254645	.	+	.	Parent=Os05t0493800-01
Chr05	irgsp1_rep	CDS	24254646	24254857	.	+	0	Parent=Os05t0493800-01
Chr05	irgsp1_rep	CDS	24255021	24255083	.	+	1	Parent=Os05t0493800-01
Chr05	irgsp1_rep	CDS	24255476	24255592	.	+	1	Parent=Os05t0493800-01
Chr05	irgsp1_rep	CDS	24255689	24256106	.	+	1	Parent=Os05t0493800-01
Chr05	irgsp1_rep	CDS	24256189	24256608	.	+	0	Parent=Os05t0493800-01
Chr05	irgsp1_rep	three_prime_UTR	24256609	24256914	.	+	.	Parent=Os05t0493800-01
Chr05	irgsp1_rep	mRNA	24271090	24275144	.	+	.	ID=Os05t0494000-01;Name=Os05t0494000-01;Locus_id=Os05g0494000;RAP-DB Gene Symbol Synonym(s)=OsC3'H1%2C CYP98A4;RAP-DB Gene Name Synonym(s)=p-Coumaroyl ester 3-hydroxylase 1;Oryzabase Gene Symbol Synonym(s)=C3H1%2C C3'H%2C OsC3H1%2C OsC3'H;Oryzabase Gene Name Synonym(s)=p-coumaroyl shikimate/quinate 3-hydroxylase 1;Note=p-Coumaroyl ester 3-hydroxylase%2C Determination of lignin content%2C composition and the degree of cell wall cross-linking;Transcript_evidence=AK099695;ORF_evidence=Q0DH37;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 superfamily (IPR036396),CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J013074G15;Manual Curation=August 17%2C 2018;Literature_PMID=29890017;Oryzabase=16720;Expression=AK099695;TENOR=Os05t0494000-01;KEGG=Os05t0494000-01 (EC:1.14.13.-)
Chr05	irgsp1_rep	five_prime_UTR	24271090	24271149	.	+	.	Parent=Os05t0494000-01
Chr05	irgsp1_rep	CDS	24271150	24271645	.	+	0	Parent=Os05t0494000-01
Chr05	irgsp1_rep	CDS	24273229	24273623	.	+	2	Parent=Os05t0494000-01
Chr05	irgsp1_rep	CDS	24274201	24274848	.	+	0	Parent=Os05t0494000-01
Chr05	irgsp1_rep	three_prime_UTR	24274849	24275144	.	+	.	Parent=Os05t0494000-01
Chr05	irgsp1_rep	mRNA	24273226	24274847	.	-	.	ID=Os05t0494050-00;Name=Os05t0494050-00;Locus_id=Os05g0494050;Note=Hypothetical gene.;Transcript_evidence=EU942896 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0494050-00;KEGG=Os05t0494050-00
Chr05	irgsp1_rep	five_prime_UTR	24274846	24274847	.	-	.	Parent=Os05t0494050-00
Chr05	irgsp1_rep	CDS	24274237	24274845	.	-	0	Parent=Os05t0494050-00
Chr05	irgsp1_rep	three_prime_UTR	24274150	24274236	.	-	.	Parent=Os05t0494050-00
Chr05	irgsp1_rep	three_prime_UTR	24273226	24273716	.	-	.	Parent=Os05t0494050-00
Chr05	irgsp1_rep	mRNA	24275966	24280288	.	+	.	ID=Os05t0494100-01;Name=Os05t0494100-01;Locus_id=Os05g0494100;RAP-DB Gene Symbol Synonym(s)=DRAP2%2C OsDrAp2%2C OsHAPL1;RAP-DB Gene Name Synonym(s)=DR1 ASSOCIATED PROTEIN 2%2C Dr1-associated protein 2%2C Heme Activator Protein like 1;CGSNL Gene Symbol=DRAP2;CGSNL Gene Name=DR1 ASSOCIATED PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsDrAp2%2C DrAp2%2C OsHAPL1%2C HAPL1%2C DLN150%2C OsDLN150;Oryzabase Gene Name Synonym(s)=Dr1-associated protein2%2C eukaryotic general repressor DrAp2%2C Heme Activator Protein like 1%2C DLN repressor 150%2C DLN motif protein 150;Note=Histone-like transcription factor%2C Transcriptional repressor%2C Repressor of heading date%2C Inhibition of flowering under long-day condition;Transcript_evidence=AK068320,AB288048;ORF_evidence=Q65X80;GO=Molecular Function: protein heterodimerization activity (GO:0046982);InterPro=Histone-fold (IPR009072),Transcription factor CBF/NF-Y/archaeal histone domain (IPR003958);NIAS_FLcDNA=J013150F08;Manual Curation=June 5%2C 2017;Literature_PMID=28043949,18193457;Oryzabase=8499;Expression=AK068320;TENOR=Os05t0494100-01;KEGG=Os05t0494100-01;Subcellular location=nucleus (GO:0005634)
Chr05	irgsp1_rep	five_prime_UTR	24275966	24276078	.	+	.	Parent=Os05t0494100-01
Chr05	irgsp1_rep	CDS	24276079	24276111	.	+	0	Parent=Os05t0494100-01
Chr05	irgsp1_rep	CDS	24277399	24277471	.	+	0	Parent=Os05t0494100-01
Chr05	irgsp1_rep	CDS	24278734	24278827	.	+	2	Parent=Os05t0494100-01
Chr05	irgsp1_rep	CDS	24279116	24279229	.	+	1	Parent=Os05t0494100-01
Chr05	irgsp1_rep	CDS	24279313	24279361	.	+	1	Parent=Os05t0494100-01
Chr05	irgsp1_rep	CDS	24279556	24280065	.	+	0	Parent=Os05t0494100-01
Chr05	irgsp1_rep	three_prime_UTR	24280066	24280288	.	+	.	Parent=Os05t0494100-01
Chr05	irgsp1_rep	mRNA	24280518	24281730	.	-	.	ID=Os05t0494200-01;Name=Os05t0494200-01;Locus_id=Os05g0494200;CGSNL Gene Symbol=OC2;CGSNL Gene Name=ORYZACYSTATIN 2;Oryzabase Gene Symbol Synonym(s)=Oc2*%2C Oc2%2C OC-II%2C OC-III%2C OCII%2C OsCYS2;Oryzabase Gene Name Synonym(s)=Oryzacystatin2%2C Cysteine proteinase inhibitor 2%2C Oryzacystatin-2%2C Oryzacystatin II%2C Oryzacystatin-II%2C Oryzacystatin-III;Note=Similar to Cystatin (Fragment).;Transcript_evidence=AK061025 (DDBJ%2C Best hit);ORF_evidence=Q7Y0Q9 (UniProt);NIAS_FLcDNA=006-204-F04;Oryzabase=657;Expression=AK061025;TENOR=Os05t0494200-01;KEGG=Os05t0494200-01
Chr05	irgsp1_rep	five_prime_UTR	24281726	24281730	.	-	.	Parent=Os05t0494200-01
Chr05	irgsp1_rep	CDS	24281333	24281725	.	-	0	Parent=Os05t0494200-01
Chr05	irgsp1_rep	three_prime_UTR	24280844	24281332	.	-	.	Parent=Os05t0494200-01
Chr05	irgsp1_rep	three_prime_UTR	24280518	24280710	.	-	.	Parent=Os05t0494200-01
Chr05	irgsp1_rep	mRNA	24280548	24281725	.	-	.	ID=Os05t0494200-02;Name=Os05t0494200-02;Locus_id=Os05g0494200;CGSNL Gene Symbol=OC2;CGSNL Gene Name=ORYZACYSTATIN 2;Oryzabase Gene Symbol Synonym(s)=Oc2*%2C Oc2%2C OC-II%2C OC-III%2C OCII%2C OsCYS2;Oryzabase Gene Name Synonym(s)=Oryzacystatin2%2C Cysteine proteinase inhibitor 2%2C Oryzacystatin-2%2C Oryzacystatin II%2C Oryzacystatin-II%2C Oryzacystatin-III;Note=Similar to Cysteine proteinase inhibitor-II (Oryzacystatin-II).;Transcript_evidence=AK059563 (DDBJ%2C Best hit);ORF_evidence=Q9LEI7 (UniProt);GO=Molecular Function: cysteine-type endopeptidase inhibitor activity (GO:0004869);InterPro=Proteinase inhibitor I25%2C cystatin (IPR000010),Proteinase inhibitor I25%2C cystatin%2C conserved site (IPR018073),Proteinase inhibitor I25%2C cystatin%2C conserved region (IPR020381);NIAS_FLcDNA=001-029-H04;Oryzabase=657;Expression=AK059563;TENOR=Os05t0494200-02;KEGG=Os05t0494200-02
Chr05	irgsp1_rep	CDS	24281465	24281725	.	-	0	Parent=Os05t0494200-02
Chr05	irgsp1_rep	CDS	24280846	24281040	.	-	0	Parent=Os05t0494200-02
Chr05	irgsp1_rep	three_prime_UTR	24280844	24280845	.	-	.	Parent=Os05t0494200-02
Chr05	irgsp1_rep	three_prime_UTR	24280548	24280710	.	-	.	Parent=Os05t0494200-02
Chr05	irgsp1_rep	mRNA	24287577	24289563	.	+	.	ID=Os05t0494500-01;Name=Os05t0494500-01;Locus_id=Os05g0494500;Note=Protein of unknown function DUF250 domain containing protein.;Transcript_evidence=AK071846 (DDBJ%2C Best hit);ORF_evidence=NP_001159001.1 (RefSeq);InterPro=Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=J023120O09;Expression=AK071846;TENOR=Os05t0494500-01;KEGG=Os05t0494500-01
Chr05	irgsp1_rep	five_prime_UTR	24287577	24287675	.	+	.	Parent=Os05t0494500-01
Chr05	irgsp1_rep	CDS	24287676	24288740	.	+	0	Parent=Os05t0494500-01
Chr05	irgsp1_rep	three_prime_UTR	24288741	24288777	.	+	.	Parent=Os05t0494500-01
Chr05	irgsp1_rep	three_prime_UTR	24289191	24289563	.	+	.	Parent=Os05t0494500-01
Chr05	irgsp1_rep	mRNA	24287587	24288897	.	+	.	ID=Os05t0494500-02;Name=Os05t0494500-02;Locus_id=Os05g0494500;Note=Protein of unknown function DUF250 domain containing protein.;Transcript_evidence=AK059987 (DDBJ%2C Best hit);ORF_evidence=B6TB76 (UniProt);InterPro=Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=006-212-H01;Expression=AK059987;TENOR=Os05t0494500-02;KEGG=Os05t0494500-02
Chr05	irgsp1_rep	five_prime_UTR	24287587	24287675	.	+	.	Parent=Os05t0494500-02
Chr05	irgsp1_rep	CDS	24287676	24288740	.	+	0	Parent=Os05t0494500-02
Chr05	irgsp1_rep	three_prime_UTR	24288741	24288897	.	+	.	Parent=Os05t0494500-02
Chr05	irgsp1_rep	mRNA	24291732	24292848	.	-	.	ID=Os05t0494600-01;Name=Os05t0494600-01;Locus_id=Os05g0494600;Oryzabase Gene Symbol Synonym(s)=Os_F0757;Note=Similar to Circadian clock coupling factor ZGT.;Transcript_evidence=AK108158 (DDBJ%2C Best hit);ORF_evidence=Q94FM9 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-139-G09;Oryzabase=17513;Expression=AK108158;TENOR=Os05t0494600-01;KEGG=Os05t0494600-01
Chr05	irgsp1_rep	five_prime_UTR	24292796	24292848	.	-	.	Parent=Os05t0494600-01
Chr05	irgsp1_rep	CDS	24291872	24292795	.	-	0	Parent=Os05t0494600-01
Chr05	irgsp1_rep	three_prime_UTR	24291732	24291871	.	-	.	Parent=Os05t0494600-01
Chr05	irgsp1_rep	mRNA	24298176	24298999	.	+	.	ID=Os05t0494700-01;Name=Os05t0494700-01;Locus_id=Os05g0494700;Note=Hypothetical conserved gene.;Transcript_evidence=AK243175 (DDBJ%2C Best hit);ORF_evidence=A2Y632 (UniProt);NIAS_FLcDNA=J100036I21;TENOR=Os05t0494700-01;KEGG=Os05t0494700-01
Chr05	irgsp1_rep	five_prime_UTR	24298176	24298280	.	+	.	Parent=Os05t0494700-01
Chr05	irgsp1_rep	CDS	24298281	24298784	.	+	0	Parent=Os05t0494700-01
Chr05	irgsp1_rep	three_prime_UTR	24298785	24298999	.	+	.	Parent=Os05t0494700-01
Chr05	irgsp1_rep	mRNA	24301347	24302448	.	+	.	ID=Os05t0494800-01;Name=Os05t0494800-01;Locus_id=Os05g0494800;Note=Hypothetical protein.;Transcript_evidence=AK069939 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J023039K23;TENOR=Os05t0494800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	24301347	24301722	.	+	.	Parent=Os05t0494800-01
Chr05	irgsp1_rep	CDS	24301723	24301756	.	+	0	Parent=Os05t0494800-01
Chr05	irgsp1_rep	CDS	24301872	24301973	.	+	2	Parent=Os05t0494800-01
Chr05	irgsp1_rep	CDS	24302336	24302448	.	+	2	Parent=Os05t0494800-01
Chr05	irgsp1_rep	mRNA	24307832	24309836	.	+	.	ID=Os05t0494900-01;Name=Os05t0494900-01;Locus_id=Os05g0494900;Note=SH2 motif domain containing protein.;Transcript_evidence=AK106396 (DDBJ%2C Best hit);ORF_evidence=NP_001077775.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=SH2 motif (IPR000980);NIAS_FLcDNA=002-102-F08;Expression=AK106396;TENOR=Os05t0494900-01;KEGG=Os05t0494900-01
Chr05	irgsp1_rep	five_prime_UTR	24307832	24307832	.	+	.	Parent=Os05t0494900-01
Chr05	irgsp1_rep	CDS	24307833	24308009	.	+	0	Parent=Os05t0494900-01
Chr05	irgsp1_rep	CDS	24308201	24308669	.	+	0	Parent=Os05t0494900-01
Chr05	irgsp1_rep	CDS	24309228	24309453	.	+	2	Parent=Os05t0494900-01
Chr05	irgsp1_rep	CDS	24309499	24309655	.	+	1	Parent=Os05t0494900-01
Chr05	irgsp1_rep	three_prime_UTR	24309656	24309836	.	+	.	Parent=Os05t0494900-01
Chr05	irgsp1_rep	mRNA	24308266	24309839	.	+	.	ID=Os05t0494900-02;Name=Os05t0494900-02;Locus_id=Os05g0494900;Note=Similar to GTB1 (GLOBAL TRANSCRIPTION FACTOR GROUP B1)%3B RNA binding / hydrolase%2C acting on ester bonds / transcription elongation regulator.;Transcript_evidence=AK106169 (DDBJ%2C Best hit);ORF_evidence=NP_001077775.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=SH2 motif (IPR000980);NIAS_FLcDNA=001-208-B10;Expression=AK106169;TENOR=Os05t0494900-02;KEGG=Os05t0494900-02
Chr05	irgsp1_rep	five_prime_UTR	24308266	24308266	.	+	.	Parent=Os05t0494900-02
Chr05	irgsp1_rep	CDS	24308267	24308669	.	+	0	Parent=Os05t0494900-02
Chr05	irgsp1_rep	CDS	24309228	24309655	.	+	2	Parent=Os05t0494900-02
Chr05	irgsp1_rep	three_prime_UTR	24309656	24309839	.	+	.	Parent=Os05t0494900-02
Chr05	irgsp1_rep	mRNA	24309770	24311123	.	-	.	ID=Os05t0495000-00;Name=Os05t0495000-00;Locus_id=Os05g0495000;Note=Hypothetical conserved gene.;Transcript_evidence=CT829003 (DDBJ%2C Best hit);ORF_evidence=B9FKX7 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);TENOR=Os05t0495000-00;KEGG=Os05t0495000-00 (EC:6.3.2.19)
Chr05	irgsp1_rep	five_prime_UTR	24310766	24311123	.	-	.	Parent=Os05t0495000-00
Chr05	irgsp1_rep	CDS	24309905	24310765	.	-	0	Parent=Os05t0495000-00
Chr05	irgsp1_rep	three_prime_UTR	24309770	24309904	.	-	.	Parent=Os05t0495000-00
Chr05	irgsp1_rep	mRNA	24312890	24316931	.	+	.	ID=Os05t0495100-01;Name=Os05t0495100-01;Locus_id=Os05g0495100;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK108028 (DDBJ%2C Best hit);ORF_evidence=A2Y635 (UniProt);NIAS_FLcDNA=002-137-A12;Expression=AK108028;TENOR=Os05t0495100-01;KEGG=Os05t0495100-01
Chr05	irgsp1_rep	five_prime_UTR	24312890	24313081	.	+	.	Parent=Os05t0495100-01
Chr05	irgsp1_rep	CDS	24313082	24313173	.	+	0	Parent=Os05t0495100-01
Chr05	irgsp1_rep	CDS	24313692	24313791	.	+	1	Parent=Os05t0495100-01
Chr05	irgsp1_rep	CDS	24314407	24314566	.	+	0	Parent=Os05t0495100-01
Chr05	irgsp1_rep	CDS	24315310	24315757	.	+	2	Parent=Os05t0495100-01
Chr05	irgsp1_rep	CDS	24316211	24316286	.	+	1	Parent=Os05t0495100-01
Chr05	irgsp1_rep	CDS	24316395	24316441	.	+	0	Parent=Os05t0495100-01
Chr05	irgsp1_rep	CDS	24316536	24316719	.	+	1	Parent=Os05t0495100-01
Chr05	irgsp1_rep	three_prime_UTR	24316720	24316931	.	+	.	Parent=Os05t0495100-01
Chr05	irgsp1_rep	mRNA	24321040	24322728	.	-	.	ID=Os05t0495200-01;Name=Os05t0495200-01;Locus_id=Os05g0495200;CGSNL Gene Symbol=BZIP44;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 44;Oryzabase Gene Symbol Synonym(s)=OsbZIP44;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 44;Note=Basic leucine zipper domain containing protein.;Transcript_evidence=AK072281 (DDBJ%2C Best hit);ORF_evidence=D6MKB2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),Basic leucine zipper (IPR011700);NIAS_FLcDNA=J023018E07;Oryzabase=10129;TENOR=Os05t0495200-01
Chr05	irgsp1_rep	five_prime_UTR	24322050	24322728	.	-	.	Parent=Os05t0495200-01
Chr05	irgsp1_rep	CDS	24321375	24322049	.	-	0	Parent=Os05t0495200-01
Chr05	irgsp1_rep	three_prime_UTR	24321040	24321374	.	-	.	Parent=Os05t0495200-01
Chr05	irgsp1_rep	mRNA	24321040	24322679	.	-	.	ID=Os05t0495200-02;Name=Os05t0495200-02;Locus_id=Os05g0495200;CGSNL Gene Symbol=BZIP44;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 44;Oryzabase Gene Symbol Synonym(s)=OsbZIP44;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 44;Note=Basic leucine zipper domain containing protein.;Transcript_evidence=AK104986 (DDBJ%2C Best hit);ORF_evidence=D6MKB2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),Basic leucine zipper (IPR011700);NIAS_FLcDNA=002-110-E11;Oryzabase=10129;TENOR=Os05t0495200-02
Chr05	irgsp1_rep	five_prime_UTR	24322050	24322679	.	-	.	Parent=Os05t0495200-02
Chr05	irgsp1_rep	CDS	24321375	24322049	.	-	0	Parent=Os05t0495200-02
Chr05	irgsp1_rep	three_prime_UTR	24321040	24321374	.	-	.	Parent=Os05t0495200-02
Chr05	irgsp1_rep	mRNA	24323478	24323891	.	-	.	ID=Os05t0495250-00;Name=Os05t0495250-00;Locus_id=Os05g0495250;Note=Non-protein coding transcript.;Transcript_evidence=CT836397 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os05t0495250-00
Chr05	irgsp1_rep	exon	24323478	24323891	.	-	.	Parent=Os05t0495250-00
Chr05	irgsp1_rep	mRNA	24324906	24329940	.	-	.	ID=Os05t0495300-01;Name=Os05t0495300-01;Locus_id=Os05g0495300;Note=Conserved hypothetical protein.;Transcript_evidence=AK120354 (DDBJ%2C Best hit),AK069722 (DDBJ%2C Best hit),AK072449 (DDBJ%2C Best hit),AK120489 (DDBJ%2C Best hit);ORF_evidence=B9FMM9 (UniProt);NIAS_FLcDNA=J013066E05,J023028M06,J023114A13,J013118G12;Expression=AK120354;TENOR=Os05t0495300-01;KEGG=Os05t0495300-01
Chr05	irgsp1_rep	five_prime_UTR	24327288	24329940	.	-	.	Parent=Os05t0495300-01
Chr05	irgsp1_rep	CDS	24326961	24327287	.	-	0	Parent=Os05t0495300-01
Chr05	irgsp1_rep	three_prime_UTR	24324906	24326960	.	-	.	Parent=Os05t0495300-01
Chr05	irgsp1_rep	mRNA	24325661	24329938	.	-	.	ID=Os05t0495300-02;Name=Os05t0495300-02;Locus_id=Os05g0495300;Note=Hypothetical conserved gene.;Transcript_evidence=AK066268 (DDBJ%2C Best hit);ORF_evidence=B9FMM9 (UniProt);NIAS_FLcDNA=J013060D15;TENOR=Os05t0495300-02;KEGG=Os05t0495300-02
Chr05	irgsp1_rep	five_prime_UTR	24328245	24329938	.	-	.	Parent=Os05t0495300-02
Chr05	irgsp1_rep	five_prime_UTR	24327648	24328108	.	-	.	Parent=Os05t0495300-02
Chr05	irgsp1_rep	five_prime_UTR	24327288	24327456	.	-	.	Parent=Os05t0495300-02
Chr05	irgsp1_rep	CDS	24327192	24327287	.	-	0	Parent=Os05t0495300-02
Chr05	irgsp1_rep	CDS	24327039	24327111	.	-	0	Parent=Os05t0495300-02
Chr05	irgsp1_rep	CDS	24326890	24326942	.	-	2	Parent=Os05t0495300-02
Chr05	irgsp1_rep	three_prime_UTR	24325661	24326889	.	-	.	Parent=Os05t0495300-02
Chr05	irgsp1_rep	mRNA	24325724	24329434	.	-	.	ID=Os05t0495300-06;Name=Os05t0495300-06;Locus_id=Os05g0495300;Note=Conserved hypothetical protein.;Transcript_evidence=AK067980 (DDBJ%2C Best hit);ORF_evidence=Q65X72 (UniProt);NIAS_FLcDNA=J013124L12;TENOR=Os05t0495300-06;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	24327288	24329434	.	-	.	Parent=Os05t0495300-06
Chr05	irgsp1_rep	CDS	24327192	24327287	.	-	0	Parent=Os05t0495300-06
Chr05	irgsp1_rep	CDS	24327016	24327111	.	-	0	Parent=Os05t0495300-06
Chr05	irgsp1_rep	three_prime_UTR	24326208	24327015	.	-	.	Parent=Os05t0495300-06
Chr05	irgsp1_rep	three_prime_UTR	24325724	24326134	.	-	.	Parent=Os05t0495300-06
Chr05	irgsp1_rep	mRNA	24325724	24326298	.	-	.	ID=Os05t0495300-07;Name=Os05t0495300-07;Locus_id=Os05g0495300;Note=Non-protein coding transcript.;Transcript_evidence=AK061674 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-036-H02;TENOR=Os05t0495300-07
Chr05	irgsp1_rep	exon	24325724	24326298	.	-	.	Parent=Os05t0495300-07
Chr05	irgsp1_rep	mRNA	24347149	24354016	.	+	.	ID=Os05t0495600-00;Name=Os05t0495600-00;Locus_id=Os05g0495600;CGSNL Gene Symbol=ACA7;CGSNL Gene Name=CA2+-ATPASE 7;Oryzabase Gene Symbol Synonym(s)=osACA7%2C OsACA6%2C OsACA7%2C OsPM5ATP4;Oryzabase Gene Name Synonym(s)=Ca2+ P-Type ATPase 7%2C vacuolar Ca2+-ATPase 7;Note=Similar to autoinhibited calcium ATPase.;Transcript_evidence=AK374776 (DDBJ);ORF_evidence=XP_002322655.1 (RefSeq);GO=Biological Process: ATP biosynthetic process (GO:0006754),Biological Process: cation transport (GO:0006812),Biological Process: metabolic process (GO:0008152),Biological Process: calcium ion transmembrane transport (GO:0070588),Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: calcium-transporting ATPase activity (GO:0005388),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662),Molecular Function: metal ion binding (GO:0046872);InterPro=ATPase%2C P-type%2C H+ transporting proton pump (IPR000695),ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),ATPase%2C P-type cation-transporter%2C N-terminal (IPR004014),Haloacid dehalogenase-like hydrolase (IPR005834),ATPase%2C P-type cation-transporter%2C C-terminal (IPR006068),ATPase%2C P-type%2C calcium-transporting%2C PMCA-type (IPR006408),ATPase%2C P-type%2C ATPase-associated domain (IPR008250),ATPase%2C P-type phosphorylation site (IPR018303),HAD-like domain (IPR023214),ATPase%2C P-type%2C  transmembrane domain (IPR023298),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C  P-type%2C cytoplasmic transduction domain A (IPR023300);Oryzabase=13239;TENOR=Os05t0495600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	24347149	24347494	.	+	0	Parent=Os05t0495600-00
Chr05	irgsp1_rep	CDS	24349560	24351451	.	+	2	Parent=Os05t0495600-00
Chr05	irgsp1_rep	CDS	24351526	24351684	.	+	0	Parent=Os05t0495600-00
Chr05	irgsp1_rep	CDS	24352053	24352224	.	+	0	Parent=Os05t0495600-00
Chr05	irgsp1_rep	CDS	24352733	24353031	.	+	2	Parent=Os05t0495600-00
Chr05	irgsp1_rep	CDS	24353711	24354016	.	+	0	Parent=Os05t0495600-00
Chr05	irgsp1_rep	mRNA	24352071	24352848	.	-	.	ID=Os05t0495650-00;Name=Os05t0495650-00;Locus_id=Os05g0495650;Note=Non-protein coding transcript.;Transcript_evidence=EU971904 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0495650-00
Chr05	irgsp1_rep	exon	24352623	24352848	.	-	.	Parent=Os05t0495650-00
Chr05	irgsp1_rep	exon	24352071	24352245	.	-	.	Parent=Os05t0495650-00
Chr05	irgsp1_rep	mRNA	24357908	24361112	.	+	.	ID=Os05t0495700-01;Name=Os05t0495700-01;Locus_id=Os05g0495700;Oryzabase Gene Symbol Synonym(s)=GPDH1%2C OsGPDH1-1;Oryzabase Gene Name Synonym(s)=glycerol-3-phosphate dehydrogenase 1;Note=Similar to Glycerol-3-phosphate dehydrogenase.;Transcript_evidence=AK101484 (DDBJ%2C Best hit);ORF_evidence=B6SKP4 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: glycerol-3-phosphate metabolic process (GO:0006072),Biological Process: glycerol-3-phosphate catabolic process (GO:0046168),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: cytoplasm (GO:0005737),Cellular Component: glycerol-3-phosphate dehydrogenase complex (GO:0009331),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: glycerol-3-phosphate dehydrogenase [NAD+] activity (GO:0004367),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: coenzyme binding (GO:0050662),Molecular Function: NAD binding (GO:0051287);InterPro=Glycerol-3-phosphate dehydrogenase%2C NAD-dependent%2C C-terminal (IPR006109),Glycerol-3-phosphate dehydrogenase%2C NAD-dependent (IPR006168),6-phosphogluconate dehydrogenase%2C C-terminal-like (IPR008927),Glycerol-3-phosphate dehydrogenase%2C NAD-dependent%2C N-terminal (IPR011128),Dehydrogenase%2C multihelical (IPR013328),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033041G24;Oryzabase=18139;TENOR=Os05t0495700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	24357908	24358367	.	+	.	Parent=Os05t0495700-01
Chr05	irgsp1_rep	CDS	24358368	24359010	.	+	0	Parent=Os05t0495700-01
Chr05	irgsp1_rep	CDS	24359591	24359812	.	+	2	Parent=Os05t0495700-01
Chr05	irgsp1_rep	CDS	24360224	24360471	.	+	2	Parent=Os05t0495700-01
Chr05	irgsp1_rep	CDS	24360574	24360713	.	+	0	Parent=Os05t0495700-01
Chr05	irgsp1_rep	CDS	24360798	24360942	.	+	1	Parent=Os05t0495700-01
Chr05	irgsp1_rep	three_prime_UTR	24360943	24361112	.	+	.	Parent=Os05t0495700-01
Chr05	irgsp1_rep	mRNA	24358308	24361162	.	+	.	ID=Os05t0495700-02;Name=Os05t0495700-02;Locus_id=Os05g0495700;Oryzabase Gene Symbol Synonym(s)=GPDH1%2C OsGPDH1-1;Oryzabase Gene Name Synonym(s)=glycerol-3-phosphate dehydrogenase 1;Note=Similar to Glycerol-3-phosphate dehydrogenase.;Transcript_evidence=AK066880 (DDBJ%2C Best hit);ORF_evidence=B6TIZ1 (UniProt);GO=Biological Process: glycerol-3-phosphate metabolic process (GO:0006072),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: glycerol-3-phosphate dehydrogenase complex (GO:0009331),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: glycerol-3-phosphate dehydrogenase [NAD+] activity (GO:0004367);InterPro=Glycerol-3-phosphate dehydrogenase%2C NAD-dependent (IPR006168),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013087A13;Oryzabase=18139;Expression=AK066880;TENOR=Os05t0495700-02;KEGG=Os05t0495700-02
Chr05	irgsp1_rep	five_prime_UTR	24358308	24358367	.	+	.	Parent=Os05t0495700-02
Chr05	irgsp1_rep	CDS	24358368	24359033	.	+	0	Parent=Os05t0495700-02
Chr05	irgsp1_rep	three_prime_UTR	24359034	24361162	.	+	.	Parent=Os05t0495700-02
Chr05	irgsp1_rep	mRNA	24371216	24374660	.	+	.	ID=Os05t0495900-01;Name=Os05t0495900-01;Locus_id=Os05g0495900;CGSNL Gene Symbol=GNS8;CGSNL Gene Name=BETA-1%2C3-GLUCANASE 8;Oryzabase Gene Symbol Synonym(s)=Gns8%2C OsGns8;Oryzabase Gene Name Synonym(s)=beta-1%2C 3-glucanase 8;Note=Similar to Beta-1%2C3-glucanase precursor (Fragment).;Transcript_evidence=AK069244 (DDBJ%2C Best hit);ORF_evidence=Q9S7W9 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J023011M23;Oryzabase=13926;Expression=AK069244;TENOR=Os05t0495900-01;KEGG=Os05t0495900-01
Chr05	irgsp1_rep	five_prime_UTR	24371216	24371352	.	+	.	Parent=Os05t0495900-01
Chr05	irgsp1_rep	CDS	24371353	24371434	.	+	0	Parent=Os05t0495900-01
Chr05	irgsp1_rep	CDS	24373524	24374494	.	+	2	Parent=Os05t0495900-01
Chr05	irgsp1_rep	three_prime_UTR	24374495	24374660	.	+	.	Parent=Os05t0495900-01
Chr05	irgsp1_rep	mRNA	24375009	24376825	.	+	.	ID=Os05t0496000-01;Name=Os05t0496000-01;Locus_id=Os05g0496000;Note=Conserved hypothetical protein.;Transcript_evidence=AK101499 (DDBJ%2C Best hit);ORF_evidence=A2Y640 (UniProt);NIAS_FLcDNA=J033043H15;Expression=AK101499;TENOR=Os05t0496000-01;KEGG=Os05t0496000-01
Chr05	irgsp1_rep	five_prime_UTR	24375009	24375102	.	+	.	Parent=Os05t0496000-01
Chr05	irgsp1_rep	five_prime_UTR	24376195	24376196	.	+	.	Parent=Os05t0496000-01
Chr05	irgsp1_rep	CDS	24376197	24376595	.	+	0	Parent=Os05t0496000-01
Chr05	irgsp1_rep	three_prime_UTR	24376596	24376825	.	+	.	Parent=Os05t0496000-01
Chr05	irgsp1_rep	mRNA	24377113	24377979	.	-	.	ID=Os05t0496100-00;Name=Os05t0496100-00;Locus_id=Os05g0496100;Note=Translation initiation factor eIF3 subunit domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001055936.1 (RefSeq);InterPro=Translation initiation factor eIF3 subunit (IPR013906),Eukaryotic translation initiation factor 3-like domain (IPR023194);TENOR=Os05t0496100-00
Chr05	irgsp1_rep	CDS	24377967	24377979	.	-	0	Parent=Os05t0496100-00
Chr05	irgsp1_rep	CDS	24377460	24377842	.	-	2	Parent=Os05t0496100-00
Chr05	irgsp1_rep	CDS	24377113	24377367	.	-	0	Parent=Os05t0496100-00
Chr05	irgsp1_rep	mRNA	24378361	24381743	.	-	.	ID=Os05t0496200-01;Name=Os05t0496200-01;Locus_id=Os05g0496200;CGSNL Gene Symbol=PGK3;CGSNL Gene Name=PHOSPHOGLYCERATE KINASE 3;Oryzabase Gene Symbol Synonym(s)=OsPGK3%2C OsPGK3a%2C OsPGK3b%2C OsPGK3c;Oryzabase Gene Name Synonym(s)=Phosphoglycerate kinase 3%2C Phosphoglycerate kinase-3;Note=Similar to 3-phosphoglycerate kinase (Fragment).;Transcript_evidence=AK287421 (DDBJ%2C Best hit);ORF_evidence=P12782 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Molecular Function: phosphoglycerate kinase activity (GO:0004618);InterPro=Phosphoglycerate kinase (IPR001576),Phosphoglycerate kinase%2C N-terminal (IPR015824),Phosphoglycerate kinase%2C C-terminal (IPR015901),Phosphoglycerate kinase%2C conserved site (IPR015911);NIAS_FLcDNA=J043003O20;Oryzabase=20395;TENOR=Os05t0496200-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	24381452	24381743	.	-	.	Parent=Os05t0496200-01
Chr05	irgsp1_rep	CDS	24381023	24381451	.	-	0	Parent=Os05t0496200-01
Chr05	irgsp1_rep	CDS	24380646	24380723	.	-	0	Parent=Os05t0496200-01
Chr05	irgsp1_rep	CDS	24380300	24380560	.	-	0	Parent=Os05t0496200-01
Chr05	irgsp1_rep	CDS	24379831	24380148	.	-	0	Parent=Os05t0496200-01
Chr05	irgsp1_rep	CDS	24379533	24379691	.	-	0	Parent=Os05t0496200-01
Chr05	irgsp1_rep	CDS	24379215	24379424	.	-	0	Parent=Os05t0496200-01
Chr05	irgsp1_rep	three_prime_UTR	24379183	24379214	.	-	.	Parent=Os05t0496200-01
Chr05	irgsp1_rep	three_prime_UTR	24378361	24378914	.	-	.	Parent=Os05t0496200-01
Chr05	irgsp1_rep	mRNA	24379079	24380564	.	-	.	ID=Os05t0496200-02;Name=Os05t0496200-02;Locus_id=Os05g0496200;CGSNL Gene Symbol=PGK3;CGSNL Gene Name=PHOSPHOGLYCERATE KINASE 3;Oryzabase Gene Symbol Synonym(s)=OsPGK3%2C OsPGK3a%2C OsPGK3b%2C OsPGK3c;Oryzabase Gene Name Synonym(s)=Phosphoglycerate kinase 3%2C Phosphoglycerate kinase-3;Note=Similar to phosphoglycerate kinase.;Transcript_evidence=AK062214 (DDBJ%2C Best hit);ORF_evidence=NP_001147628.1 (RefSeq);GO=Biological Process: glycolysis (GO:0006096),Molecular Function: phosphoglycerate kinase activity (GO:0004618);InterPro=Phosphoglycerate kinase (IPR001576),Phosphoglycerate kinase%2C N-terminal (IPR015824),Phosphoglycerate kinase%2C C-terminal (IPR015901);NIAS_FLcDNA=001-047-A08;Oryzabase=20395;TENOR=Os05t0496200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	24380564	24380564	.	-	.	Parent=Os05t0496200-02
Chr05	irgsp1_rep	CDS	24380300	24380563	.	-	0	Parent=Os05t0496200-02
Chr05	irgsp1_rep	CDS	24379831	24380148	.	-	0	Parent=Os05t0496200-02
Chr05	irgsp1_rep	CDS	24379533	24379691	.	-	0	Parent=Os05t0496200-02
Chr05	irgsp1_rep	CDS	24379215	24379424	.	-	0	Parent=Os05t0496200-02
Chr05	irgsp1_rep	three_prime_UTR	24379079	24379214	.	-	.	Parent=Os05t0496200-02
Chr05	irgsp1_rep	mRNA	24379014	24380150	.	-	.	ID=Os05t0496200-03;Name=Os05t0496200-03;Locus_id=Os05g0496200;CGSNL Gene Symbol=PGK3;CGSNL Gene Name=PHOSPHOGLYCERATE KINASE 3;Oryzabase Gene Symbol Synonym(s)=OsPGK3%2C OsPGK3a%2C OsPGK3b%2C OsPGK3c;Oryzabase Gene Name Synonym(s)=Phosphoglycerate kinase 3%2C Phosphoglycerate kinase-3;Note=Similar to phosphoglycerate kinase.;Transcript_evidence=AK066594 (DDBJ%2C Best hit);ORF_evidence=NP_001147628.1 (RefSeq);GO=Biological Process: glycolysis (GO:0006096),Molecular Function: phosphoglycerate kinase activity (GO:0004618);InterPro=Phosphoglycerate kinase (IPR001576),Phosphoglycerate kinase%2C C-terminal (IPR015901);NIAS_FLcDNA=J013069L15;Oryzabase=20395;TENOR=Os05t0496200-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	24380149	24380150	.	-	.	Parent=Os05t0496200-03
Chr05	irgsp1_rep	CDS	24379831	24380148	.	-	0	Parent=Os05t0496200-03
Chr05	irgsp1_rep	CDS	24379533	24379691	.	-	0	Parent=Os05t0496200-03
Chr05	irgsp1_rep	CDS	24379215	24379424	.	-	0	Parent=Os05t0496200-03
Chr05	irgsp1_rep	three_prime_UTR	24379014	24379214	.	-	.	Parent=Os05t0496200-03
Chr05	irgsp1_rep	mRNA	24382286	24382876	.	+	.	ID=Os05t0496300-00;Name=Os05t0496300-00;Locus_id=Os05g0496300;CGSNL Gene Symbol=CHS27;CGSNL Gene Name=CHALCONE SYNTHASE 27;Oryzabase Gene Symbol Synonym(s)=OsCHS27;Oryzabase Gene Name Synonym(s)=Chalcone synthase 27;Note=Chalcone/stilbene synthase%2C N-terminal domain containing protein.;Transcript_evidence=AY286097 (DDBJ);ORF_evidence=A2Y651 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Chalcone/stilbene synthase%2C N-terminal (IPR001099),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);Oryzabase=23705;TENOR=Os05t0496300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	24382286	24382876	.	+	0	Parent=Os05t0496300-00
Chr05	irgsp1_rep	mRNA	24383180	24384097	.	-	.	ID=Os05t0496400-00;Name=Os05t0496400-00;Locus_id=Os05g0496400;CGSNL Gene Symbol=MC4;CGSNL Gene Name=METACASPASE 4;Oryzabase Gene Symbol Synonym(s)=OsMC4;Oryzabase Gene Name Synonym(s)=Metacaspase 4;Note=Peptidase C14%2C caspase catalytic domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q75K89 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197);InterPro=Peptidase C14%2C caspase catalytic (IPR011600);Oryzabase=18157;TENOR=Os05t0496400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	24383180	24384097	.	-	0	Parent=Os05t0496400-00
Chr05	irgsp1_rep	mRNA	24384902	24387337	.	-	.	ID=Os05t0496500-01;Name=Os05t0496500-01;Locus_id=Os05g0496500;CGSNL Gene Symbol=MC5;CGSNL Gene Name=METACASPASE 5;Oryzabase Gene Symbol Synonym(s)=OsMC5;Oryzabase Gene Name Synonym(s)=latex-abundant protein%2C latex-abundant protein-like protein%2C Metacaspase 5;Note=Similar to Latex-abundant protein.;Transcript_evidence=AK073261 (DDBJ%2C Best hit);ORF_evidence=B4FNB7 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197);InterPro=Peptidase C14%2C caspase catalytic (IPR011600);NIAS_FLcDNA=J033024G22;Oryzabase=16284;Expression=AK073261;TENOR=Os05t0496500-01;KEGG=Os05t0496500-01
Chr05	irgsp1_rep	five_prime_UTR	24387335	24387337	.	-	.	Parent=Os05t0496500-01
Chr05	irgsp1_rep	CDS	24386983	24387334	.	-	0	Parent=Os05t0496500-01
Chr05	irgsp1_rep	CDS	24385123	24386033	.	-	2	Parent=Os05t0496500-01
Chr05	irgsp1_rep	three_prime_UTR	24384902	24385122	.	-	.	Parent=Os05t0496500-01
Chr05	irgsp1_rep	mRNA	24423072	24426394	.	+	.	ID=Os05t0497150-01;Name=Os05t0497150-01;Locus_id=Os05g0497150;Oryzabase Gene Symbol Synonym(s)=SMC4%2C OsSMC4;Oryzabase Gene Name Synonym(s)=structural maintenance of Chromosomes protein 4;Note=Hypothetical conserved gene.;Transcript_evidence=AK064293 (DDBJ%2C Best hit);ORF_evidence=Q75K85 (UniProt);InterPro=RecF/RecN/SMC (IPR003395);NIAS_FLcDNA=002-105-H08;Oryzabase=13982;Expression=AK064293;TENOR=Os05t0497150-01;KEGG=Os05t0497150-01
Chr05	irgsp1_rep	five_prime_UTR	24423072	24423072	.	+	.	Parent=Os05t0497150-01
Chr05	irgsp1_rep	CDS	24423073	24423153	.	+	0	Parent=Os05t0497150-01
Chr05	irgsp1_rep	CDS	24423229	24423405	.	+	0	Parent=Os05t0497150-01
Chr05	irgsp1_rep	CDS	24423635	24423718	.	+	0	Parent=Os05t0497150-01
Chr05	irgsp1_rep	CDS	24423802	24424011	.	+	0	Parent=Os05t0497150-01
Chr05	irgsp1_rep	CDS	24424102	24424191	.	+	0	Parent=Os05t0497150-01
Chr05	irgsp1_rep	CDS	24424279	24424400	.	+	0	Parent=Os05t0497150-01
Chr05	irgsp1_rep	CDS	24424482	24424637	.	+	1	Parent=Os05t0497150-01
Chr05	irgsp1_rep	CDS	24424717	24424824	.	+	1	Parent=Os05t0497150-01
Chr05	irgsp1_rep	CDS	24424894	24424954	.	+	1	Parent=Os05t0497150-01
Chr05	irgsp1_rep	CDS	24425193	24425327	.	+	0	Parent=Os05t0497150-01
Chr05	irgsp1_rep	CDS	24425573	24425660	.	+	0	Parent=Os05t0497150-01
Chr05	irgsp1_rep	CDS	24425737	24425809	.	+	2	Parent=Os05t0497150-01
Chr05	irgsp1_rep	CDS	24426072	24426192	.	+	1	Parent=Os05t0497150-01
Chr05	irgsp1_rep	three_prime_UTR	24426193	24426394	.	+	.	Parent=Os05t0497150-01
Chr05	irgsp1_rep	mRNA	24427953	24428867	.	-	.	ID=Os05t0497200-01;Name=Os05t0497200-01;Locus_id=Os05g0497200;RAP-DB Gene Symbol Synonym(s)=ERF130%2C MFS1%2COsERF#130%2C OsERF130%2C AP2/EREBP#165%2C AP2/EREBP165;RAP-DB Gene Name Synonym(s)=ETHYLENE RESPONSE FACTOR 130%2C MULTI-FLORET SPIKELET1%2C ethylene response factor 130%2C APETALA2/ethylene-responsive element binding protein 165;CGSNL Gene Symbol=MFS1;CGSNL Gene Name=MULTI-FLORET SPIKELET 1;Oryzabase Gene Symbol Synonym(s)=ERF130%2C OsERF#130%2C OsERF130%2C AP2/EREBP#165%2C AP2/EREBP165%2C DLN151%2C OsDLN151;Oryzabase Gene Name Synonym(s)=ethylene response factor 130%2C APETALA2/ethylene-responsive element binding protein 165%2C DLN repressor 151%2C DLN motif protein 151%2C MULTI-FLORET SPIKELET1;Note=AP2/ERF (APETALA2/ethylene-responsive factor) protein%2C Regulation of spikelet meristem determinancy and floral organ identity;Transcript_evidence=AK242393;ORF_evidence=Q75K84;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=DNA-binding domain (IPR016177),AP2/ERF domain (IPR001471);NIAS_FLcDNA=J080064G22;Manual Curation=May 16%2C 2014;Literature_PMID=23629832;Oryzabase=10623;TENOR=Os05t0497200-01;KEGG=Os05t0497200-01
Chr05	irgsp1_rep	five_prime_UTR	24428683	24428867	.	-	.	Parent=Os05t0497200-01
Chr05	irgsp1_rep	CDS	24428113	24428682	.	-	0	Parent=Os05t0497200-01
Chr05	irgsp1_rep	three_prime_UTR	24427953	24428112	.	-	.	Parent=Os05t0497200-01
Chr05	irgsp1_rep	mRNA	24444094	24445186	.	-	.	ID=Os05t0497300-01;Name=Os05t0497300-01;Locus_id=Os05g0497300;CGSNL Gene Symbol=ERF74;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 74;Oryzabase Gene Symbol Synonym(s)=OsERF#074%2C OsERF074%2C OsERF74%2C AP2/EREBP#051%2C AP2/EREBP51%2C DLN152%2C OsDLN152;Oryzabase Gene Name Synonym(s)=ethylene response factor 74%2C APETALA2/ethylene-responsive element binding protein 51%2C DLN repressor 152%2C DLN motif protein 152;Note=Similar to Ethylene response factor 2.;Transcript_evidence=AK111755 (DDBJ%2C Best hit);ORF_evidence=Q6J832 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J023061G02;Oryzabase=10584;Expression=AK111755;TENOR=Os05t0497300-01;KEGG=Os05t0497300-01
Chr05	irgsp1_rep	five_prime_UTR	24445080	24445186	.	-	.	Parent=Os05t0497300-01
Chr05	irgsp1_rep	CDS	24444369	24445079	.	-	0	Parent=Os05t0497300-01
Chr05	irgsp1_rep	three_prime_UTR	24444094	24444368	.	-	.	Parent=Os05t0497300-01
Chr05	irgsp1_rep	mRNA	24464286	24466738	.	-	.	ID=Os05t0497500-00;Name=Os05t0497500-00;Locus_id=Os05g0497500;CGSNL Gene Symbol=C3H36;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 36;Oryzabase Gene Symbol Synonym(s)=OsC3H36;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 36;Note=Hypothetical conserved gene.;Transcript_evidence=EU957758 (DDBJ);ORF_evidence=B9FK81 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);Oryzabase=8601;TENOR=Os05t0497500-00;KEGG=Os05t0497500-00
Chr05	irgsp1_rep	CDS	24466491	24466738	.	-	0	Parent=Os05t0497500-00
Chr05	irgsp1_rep	CDS	24466200	24466351	.	-	1	Parent=Os05t0497500-00
Chr05	irgsp1_rep	CDS	24464617	24466091	.	-	2	Parent=Os05t0497500-00
Chr05	irgsp1_rep	three_prime_UTR	24464286	24464616	.	-	.	Parent=Os05t0497500-00
Chr05	irgsp1_rep	mRNA	24473136	24478871	.	+	.	ID=Os05t0497600-01;Name=Os05t0497600-01;Locus_id=Os05g0497600;RAP-DB Gene Symbol Synonym(s)=OsAIR1%2C AIR1;RAP-DB Gene Name Synonym(s)=arsenic-induced RING E3 ligase 1%2C ARSENIC-INDUCED RING E3 LIGASE 1;Oryzabase Gene Symbol Synonym(s)=OsAIR1%2C AIR1;Oryzabase Gene Name Synonym(s)=arsenic-induced RING E3 ligase 1%2C ARSENIC-INDUCED RING E3 LIGASE 1%2C As-Induced RING E3 ligase 1;Note=Arsenic-induced RING E3 ligase%2C Abiotic stress response;Transcript_evidence=AK243637;ORF_evidence=A0A0P0WPB2;GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957),Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING-type%2C conserved site (IPR017907);NIAS_FLcDNA=J100087K11;Manual Curation=February 5%2C 2016;Literature_PMID=26788958;Oryzabase=21035;TENOR=Os05t0497600-01;KEGG=Os05t0497600-01 (EC:6.3.2.19)
Chr05	irgsp1_rep	five_prime_UTR	24473136	24473305	.	+	.	Parent=Os05t0497600-01
Chr05	irgsp1_rep	CDS	24473306	24473492	.	+	0	Parent=Os05t0497600-01
Chr05	irgsp1_rep	CDS	24473640	24473748	.	+	2	Parent=Os05t0497600-01
Chr05	irgsp1_rep	CDS	24475823	24475881	.	+	1	Parent=Os05t0497600-01
Chr05	irgsp1_rep	CDS	24476328	24476409	.	+	2	Parent=Os05t0497600-01
Chr05	irgsp1_rep	CDS	24476550	24476670	.	+	1	Parent=Os05t0497600-01
Chr05	irgsp1_rep	CDS	24476770	24476811	.	+	0	Parent=Os05t0497600-01
Chr05	irgsp1_rep	CDS	24476940	24477467	.	+	0	Parent=Os05t0497600-01
Chr05	irgsp1_rep	CDS	24477913	24478020	.	+	0	Parent=Os05t0497600-01
Chr05	irgsp1_rep	CDS	24478123	24478320	.	+	0	Parent=Os05t0497600-01
Chr05	irgsp1_rep	CDS	24478414	24478446	.	+	0	Parent=Os05t0497600-01
Chr05	irgsp1_rep	three_prime_UTR	24478447	24478871	.	+	.	Parent=Os05t0497600-01
Chr05	irgsp1_rep	mRNA	24480751	24483094	.	+	.	ID=Os05t0497675-01;Name=Os05t0497675-01;Locus_id=Os05g0497675;Note=Ribosomal L11 methyltransferase family protein.;Transcript_evidence=AK241000 (DDBJ%2C Best hit);ORF_evidence=NP_001174476.1 (RefSeq);GO=Biological Process: protein methylation (GO:0006479),Cellular Component: cytoplasm (GO:0005737),Molecular Function: protein methyltransferase activity (GO:0008276);InterPro=Ribosomal L11 methyltransferase%2C PrmA (IPR010456);NIAS_FLcDNA=J065053D01;TENOR=Os05t0497675-01;KEGG=Os05t0497675-01
Chr05	irgsp1_rep	five_prime_UTR	24480751	24480776	.	+	.	Parent=Os05t0497675-01
Chr05	irgsp1_rep	CDS	24480777	24481118	.	+	0	Parent=Os05t0497675-01
Chr05	irgsp1_rep	CDS	24481305	24481388	.	+	0	Parent=Os05t0497675-01
Chr05	irgsp1_rep	CDS	24481574	24481714	.	+	0	Parent=Os05t0497675-01
Chr05	irgsp1_rep	CDS	24481872	24481937	.	+	0	Parent=Os05t0497675-01
Chr05	irgsp1_rep	CDS	24482069	24482236	.	+	0	Parent=Os05t0497675-01
Chr05	irgsp1_rep	CDS	24482323	24482652	.	+	0	Parent=Os05t0497675-01
Chr05	irgsp1_rep	CDS	24482757	24482855	.	+	0	Parent=Os05t0497675-01
Chr05	irgsp1_rep	three_prime_UTR	24482856	24483094	.	+	.	Parent=Os05t0497675-01
Chr05	irgsp1_rep	mRNA	24483687	24488993	.	-	.	ID=Os05t0497700-01;Name=Os05t0497700-01;Locus_id=Os05g0497700;Oryzabase Gene Symbol Synonym(s)=OsDegp8%2C DEGP8%2C OsDeg15;Oryzabase Gene Name Synonym(s)=Deg protease 8%2C DEG PROTEASE 8;Note=Similar to Peptidase.;Transcript_evidence=AK100622 (DDBJ%2C Best hit);ORF_evidence=D7NLB6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: superoxide dismutase activity (GO:0004784);InterPro=Peptidase cysteine/serine%2C trypsin-like (IPR009003),Superoxide dismutase%2C copper/zinc%2C binding site (IPR018152);NIAS_FLcDNA=J023108G08;Oryzabase=20084;TENOR=Os05t0497700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	24488814	24488993	.	-	.	Parent=Os05t0497700-01
Chr05	irgsp1_rep	CDS	24488737	24488813	.	-	0	Parent=Os05t0497700-01
Chr05	irgsp1_rep	CDS	24488445	24488625	.	-	1	Parent=Os05t0497700-01
Chr05	irgsp1_rep	CDS	24488316	24488366	.	-	0	Parent=Os05t0497700-01
Chr05	irgsp1_rep	CDS	24488067	24488141	.	-	0	Parent=Os05t0497700-01
Chr05	irgsp1_rep	CDS	24487072	24487188	.	-	0	Parent=Os05t0497700-01
Chr05	irgsp1_rep	CDS	24486863	24486994	.	-	0	Parent=Os05t0497700-01
Chr05	irgsp1_rep	CDS	24486656	24486759	.	-	0	Parent=Os05t0497700-01
Chr05	irgsp1_rep	CDS	24485923	24486008	.	-	1	Parent=Os05t0497700-01
Chr05	irgsp1_rep	CDS	24485729	24485823	.	-	2	Parent=Os05t0497700-01
Chr05	irgsp1_rep	CDS	24484957	24485650	.	-	0	Parent=Os05t0497700-01
Chr05	irgsp1_rep	CDS	24484610	24484811	.	-	2	Parent=Os05t0497700-01
Chr05	irgsp1_rep	CDS	24484235	24484323	.	-	1	Parent=Os05t0497700-01
Chr05	irgsp1_rep	CDS	24483906	24484135	.	-	2	Parent=Os05t0497700-01
Chr05	irgsp1_rep	three_prime_UTR	24483687	24483905	.	-	.	Parent=Os05t0497700-01
Chr05	irgsp1_rep	mRNA	24483709	24486757	.	-	.	ID=Os05t0497700-02;Name=Os05t0497700-02;Locus_id=Os05g0497700;Oryzabase Gene Symbol Synonym(s)=OsDegp8%2C DEGP8%2C OsDeg15;Oryzabase Gene Name Synonym(s)=Deg protease 8%2C DEG PROTEASE 8;Note=Hypothetical conserved gene.;Transcript_evidence=AK060635 (DDBJ%2C Best hit);ORF_evidence=D7NLB6 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Peptidase cysteine/serine%2C trypsin-like (IPR009003);NIAS_FLcDNA=001-027-B11;Oryzabase=20084;Expression=AK060635;TENOR=Os05t0497700-02;KEGG=Os05t0497700-02
Chr05	irgsp1_rep	five_prime_UTR	24486757	24486757	.	-	.	Parent=Os05t0497700-02
Chr05	irgsp1_rep	CDS	24486656	24486756	.	-	0	Parent=Os05t0497700-02
Chr05	irgsp1_rep	CDS	24485923	24486008	.	-	1	Parent=Os05t0497700-02
Chr05	irgsp1_rep	CDS	24485729	24485823	.	-	2	Parent=Os05t0497700-02
Chr05	irgsp1_rep	CDS	24484957	24485650	.	-	0	Parent=Os05t0497700-02
Chr05	irgsp1_rep	CDS	24484610	24484811	.	-	2	Parent=Os05t0497700-02
Chr05	irgsp1_rep	CDS	24484235	24484323	.	-	1	Parent=Os05t0497700-02
Chr05	irgsp1_rep	CDS	24483906	24484135	.	-	2	Parent=Os05t0497700-02
Chr05	irgsp1_rep	three_prime_UTR	24483709	24483905	.	-	.	Parent=Os05t0497700-02
Chr05	irgsp1_rep	mRNA	24490026	24490222	.	+	.	ID=Os05t0497775-00;Name=Os05t0497775-00;Locus_id=Os05g0497775;Note=Non-protein coding transcript.;Transcript_evidence=EU942950 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0497775-00
Chr05	irgsp1_rep	exon	24490026	24490222	.	+	.	Parent=Os05t0497775-00
Chr05	irgsp1_rep	mRNA	24518826	24519740	.	-	.	ID=Os05t0498200-01;Name=Os05t0498200-01;Locus_id=Os05g0498200;Note=Eggshell protein family protein.;Transcript_evidence=AK107526 (DDBJ%2C Best hit);ORF_evidence=A2Y656 (UniProt);NIAS_FLcDNA=002-129-G04;Expression=AK107526;TENOR=Os05t0498200-01;KEGG=Os05t0498200-01
Chr05	irgsp1_rep	five_prime_UTR	24519659	24519740	.	-	.	Parent=Os05t0498200-01
Chr05	irgsp1_rep	CDS	24519068	24519658	.	-	0	Parent=Os05t0498200-01
Chr05	irgsp1_rep	three_prime_UTR	24518826	24519067	.	-	.	Parent=Os05t0498200-01
Chr05	irgsp1_rep	mRNA	24522895	24534335	.	+	.	ID=Os05t0498300-01;Name=Os05t0498300-01;Locus_id=Os05g0498300;Oryzabase Gene Symbol Synonym(s)=OsMSH5%2C MSH5;Oryzabase Gene Name Synonym(s)=MutS-homolog 5;Note=DNA mismatch repair protein MutS%2C core domain containing protein.;Transcript_evidence=AK101127 (DDBJ%2C Best hit);ORF_evidence=NP_188683.3 (RefSeq);GO=Biological Process: mismatch repair (GO:0006298),Molecular Function: ATP binding (GO:0005524),Molecular Function: mismatched DNA binding (GO:0030983);InterPro=DNA mismatch repair protein MutS%2C C-terminal (IPR000432),DNA mismatch repair protein MutS%2C core (IPR007696);NIAS_FLcDNA=J033025O14;Oryzabase=12251;Expression=AK101127;TENOR=Os05t0498300-01;KEGG=Os05t0498300-01
Chr05	irgsp1_rep	five_prime_UTR	24522895	24523177	.	+	.	Parent=Os05t0498300-01
Chr05	irgsp1_rep	CDS	24523178	24523228	.	+	0	Parent=Os05t0498300-01
Chr05	irgsp1_rep	CDS	24523790	24523821	.	+	0	Parent=Os05t0498300-01
Chr05	irgsp1_rep	CDS	24523913	24524007	.	+	1	Parent=Os05t0498300-01
Chr05	irgsp1_rep	CDS	24524201	24524281	.	+	2	Parent=Os05t0498300-01
Chr05	irgsp1_rep	CDS	24524354	24524426	.	+	2	Parent=Os05t0498300-01
Chr05	irgsp1_rep	CDS	24524993	24525056	.	+	1	Parent=Os05t0498300-01
Chr05	irgsp1_rep	CDS	24525654	24525805	.	+	0	Parent=Os05t0498300-01
Chr05	irgsp1_rep	CDS	24526043	24526144	.	+	1	Parent=Os05t0498300-01
Chr05	irgsp1_rep	CDS	24526219	24526246	.	+	1	Parent=Os05t0498300-01
Chr05	irgsp1_rep	CDS	24526321	24526352	.	+	0	Parent=Os05t0498300-01
Chr05	irgsp1_rep	CDS	24526436	24526493	.	+	1	Parent=Os05t0498300-01
Chr05	irgsp1_rep	CDS	24526594	24526680	.	+	0	Parent=Os05t0498300-01
Chr05	irgsp1_rep	CDS	24527217	24527273	.	+	0	Parent=Os05t0498300-01
Chr05	irgsp1_rep	CDS	24527491	24527592	.	+	0	Parent=Os05t0498300-01
Chr05	irgsp1_rep	CDS	24527733	24527777	.	+	0	Parent=Os05t0498300-01
Chr05	irgsp1_rep	CDS	24528805	24528882	.	+	0	Parent=Os05t0498300-01
Chr05	irgsp1_rep	CDS	24529539	24529589	.	+	0	Parent=Os05t0498300-01
Chr05	irgsp1_rep	CDS	24529664	24529745	.	+	0	Parent=Os05t0498300-01
Chr05	irgsp1_rep	CDS	24530072	24530145	.	+	2	Parent=Os05t0498300-01
Chr05	irgsp1_rep	CDS	24530213	24530309	.	+	0	Parent=Os05t0498300-01
Chr05	irgsp1_rep	CDS	24530873	24530969	.	+	2	Parent=Os05t0498300-01
Chr05	irgsp1_rep	CDS	24531062	24531151	.	+	1	Parent=Os05t0498300-01
Chr05	irgsp1_rep	CDS	24531269	24531333	.	+	1	Parent=Os05t0498300-01
Chr05	irgsp1_rep	CDS	24531419	24531477	.	+	2	Parent=Os05t0498300-01
Chr05	irgsp1_rep	CDS	24531569	24531645	.	+	0	Parent=Os05t0498300-01
Chr05	irgsp1_rep	CDS	24531881	24531967	.	+	1	Parent=Os05t0498300-01
Chr05	irgsp1_rep	CDS	24532043	24532102	.	+	1	Parent=Os05t0498300-01
Chr05	irgsp1_rep	CDS	24532198	24532261	.	+	1	Parent=Os05t0498300-01
Chr05	irgsp1_rep	CDS	24533058	24533111	.	+	0	Parent=Os05t0498300-01
Chr05	irgsp1_rep	CDS	24533216	24533298	.	+	0	Parent=Os05t0498300-01
Chr05	irgsp1_rep	CDS	24533393	24533424	.	+	1	Parent=Os05t0498300-01
Chr05	irgsp1_rep	CDS	24533503	24533526	.	+	2	Parent=Os05t0498300-01
Chr05	irgsp1_rep	CDS	24533818	24533933	.	+	2	Parent=Os05t0498300-01
Chr05	irgsp1_rep	CDS	24534012	24534092	.	+	0	Parent=Os05t0498300-01
Chr05	irgsp1_rep	three_prime_UTR	24534093	24534335	.	+	.	Parent=Os05t0498300-01
Chr05	irgsp1_rep	mRNA	24535183	24535873	.	+	.	ID=Os05t0498333-00;Name=Os05t0498333-00;Locus_id=Os05g0498333;Note=Hypothetical conserved gene.;Transcript_evidence=CT831416 (DDBJ%2C Secondary hit);ORF_evidence=B9FDT0 (UniProt);TENOR=Os05t0498333-00;KEGG=Os05t0498333-00
Chr05	irgsp1_rep	five_prime_UTR	24535183	24535184	.	+	.	Parent=Os05t0498333-00
Chr05	irgsp1_rep	CDS	24535185	24535850	.	+	0	Parent=Os05t0498333-00
Chr05	irgsp1_rep	three_prime_UTR	24535851	24535873	.	+	.	Parent=Os05t0498333-00
Chr05	irgsp1_rep	mRNA	24536375	24537264	.	+	.	ID=Os05t0498366-00;Name=Os05t0498366-00;Locus_id=Os05g0498366;Note=Conserved hypothetical protein.;Transcript_evidence=CU406854 (DDBJ%2C Best hit);ORF_evidence=A2XJC9 (UniProt);TENOR=Os05t0498366-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	24536375	24536474	.	+	.	Parent=Os05t0498366-00
Chr05	irgsp1_rep	five_prime_UTR	24536483	24536884	.	+	.	Parent=Os05t0498366-00
Chr05	irgsp1_rep	CDS	24536885	24537184	.	+	0	Parent=Os05t0498366-00
Chr05	irgsp1_rep	three_prime_UTR	24537185	24537191	.	+	.	Parent=Os05t0498366-00
Chr05	irgsp1_rep	three_prime_UTR	24537199	24537264	.	+	.	Parent=Os05t0498366-00
Chr05	irgsp1_rep	mRNA	24537805	24539858	.	+	.	ID=Os05t0498400-01;Name=Os05t0498400-01;Locus_id=Os05g0498400;Oryzabase Gene Symbol Synonym(s)=SUI1;Oryzabase Gene Name Synonym(s)=protein translation factor SUI1;Note=Similar to Protein translation factor SUI1.;Transcript_evidence=AK058219 (DDBJ%2C Best hit);ORF_evidence=B4FLV6 (UniProt);GO=Biological Process: translational initiation (GO:0006413),Molecular Function: translation initiation factor activity (GO:0003743);InterPro=Translation initiation factor SUI1 (IPR001950),Eukaryotic translation initiation factor SUI1 (IPR005874);NIAS_FLcDNA=001-010-F05;Oryzabase=16006;Expression=AK058219;TENOR=Os05t0498400-01;KEGG=Os05t0498400-01
Chr05	irgsp1_rep	five_prime_UTR	24537805	24537894	.	+	.	Parent=Os05t0498400-01
Chr05	irgsp1_rep	five_prime_UTR	24538712	24538779	.	+	.	Parent=Os05t0498400-01
Chr05	irgsp1_rep	CDS	24538780	24538816	.	+	0	Parent=Os05t0498400-01
Chr05	irgsp1_rep	CDS	24539141	24539352	.	+	2	Parent=Os05t0498400-01
Chr05	irgsp1_rep	CDS	24539432	24539485	.	+	0	Parent=Os05t0498400-01
Chr05	irgsp1_rep	CDS	24539589	24539633	.	+	0	Parent=Os05t0498400-01
Chr05	irgsp1_rep	three_prime_UTR	24539634	24539858	.	+	.	Parent=Os05t0498400-01
Chr05	irgsp1_rep	mRNA	24537945	24539858	.	+	.	ID=Os05t0498400-02;Name=Os05t0498400-02;Locus_id=Os05g0498400;Oryzabase Gene Symbol Synonym(s)=SUI1;Oryzabase Gene Name Synonym(s)=protein translation factor SUI1;Note=Similar to Protein translation factor SUI1.;Transcript_evidence=AK070301 (DDBJ%2C Best hit);ORF_evidence=B4FLV6 (UniProt);GO=Biological Process: translational initiation (GO:0006413),Molecular Function: translation initiation factor activity (GO:0003743);InterPro=Translation initiation factor SUI1 (IPR001950),Eukaryotic translation initiation factor SUI1 (IPR005874);NIAS_FLcDNA=J023049M22;Oryzabase=16006;Expression=AK070301;TENOR=Os05t0498400-02;KEGG=Os05t0498400-02
Chr05	irgsp1_rep	five_prime_UTR	24537945	24538779	.	+	.	Parent=Os05t0498400-02
Chr05	irgsp1_rep	CDS	24538780	24538816	.	+	0	Parent=Os05t0498400-02
Chr05	irgsp1_rep	CDS	24539141	24539352	.	+	2	Parent=Os05t0498400-02
Chr05	irgsp1_rep	CDS	24539432	24539485	.	+	0	Parent=Os05t0498400-02
Chr05	irgsp1_rep	CDS	24539589	24539633	.	+	0	Parent=Os05t0498400-02
Chr05	irgsp1_rep	three_prime_UTR	24539634	24539858	.	+	.	Parent=Os05t0498400-02
Chr05	irgsp1_rep	mRNA	24540877	24541630	.	-	.	ID=Os05t0498500-01;Name=Os05t0498500-01;Locus_id=Os05g0498500;Note=Conserved hypothetical protein.;Transcript_evidence=AK063878 (DDBJ%2C Best hit);ORF_evidence=Q6L4U8 (UniProt);NIAS_FLcDNA=001-122-F05;Expression=AK063878;TENOR=Os05t0498500-01;KEGG=Os05t0498500-01
Chr05	irgsp1_rep	five_prime_UTR	24541629	24541630	.	-	.	Parent=Os05t0498500-01
Chr05	irgsp1_rep	CDS	24541182	24541628	.	-	0	Parent=Os05t0498500-01
Chr05	irgsp1_rep	three_prime_UTR	24540877	24541181	.	-	.	Parent=Os05t0498500-01
Chr05	irgsp1_rep	mRNA	24551224	24551533	.	-	.	ID=Os05t0498633-00;Name=Os05t0498633-00;Locus_id=Os05g0498633;Note=Non-protein coding transcript.;Transcript_evidence=CT836427 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os05t0498633-00
Chr05	irgsp1_rep	exon	24551224	24551533	.	-	.	Parent=Os05t0498633-00
Chr05	irgsp1_rep	mRNA	24552461	24555115	.	-	.	ID=Os05t0498700-01;Name=Os05t0498700-01;Locus_id=Os05g0498700;Note=Similar to Gda-1 protein.;Transcript_evidence=AK065975 (DDBJ%2C Best hit);ORF_evidence=B6T8N2 (UniProt);InterPro=Development/cell death domain (IPR013989);NIAS_FLcDNA=J013045D18;Expression=AK065975;TENOR=Os05t0498700-01;KEGG=Os05t0498700-01
Chr05	irgsp1_rep	five_prime_UTR	24555011	24555115	.	-	.	Parent=Os05t0498700-01
Chr05	irgsp1_rep	five_prime_UTR	24554779	24554914	.	-	.	Parent=Os05t0498700-01
Chr05	irgsp1_rep	CDS	24554172	24554778	.	-	0	Parent=Os05t0498700-01
Chr05	irgsp1_rep	CDS	24553937	24554037	.	-	2	Parent=Os05t0498700-01
Chr05	irgsp1_rep	CDS	24553175	24553258	.	-	0	Parent=Os05t0498700-01
Chr05	irgsp1_rep	CDS	24552981	24553091	.	-	0	Parent=Os05t0498700-01
Chr05	irgsp1_rep	CDS	24552818	24552859	.	-	0	Parent=Os05t0498700-01
Chr05	irgsp1_rep	three_prime_UTR	24552461	24552817	.	-	.	Parent=Os05t0498700-01
Chr05	irgsp1_rep	mRNA	24560496	24563882	.	+	.	ID=Os05t0498800-01;Name=Os05t0498800-01;Locus_id=Os05g0498800;Note=Conserved hypothetical protein.;Transcript_evidence=AK064122 (DDBJ%2C Best hit);ORF_evidence=Q948B6 (UniProt);NIAS_FLcDNA=002-102-C06;TENOR=Os05t0498800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	24560496	24560670	.	+	.	Parent=Os05t0498800-01
Chr05	irgsp1_rep	five_prime_UTR	24561848	24561944	.	+	.	Parent=Os05t0498800-01
Chr05	irgsp1_rep	five_prime_UTR	24562496	24562502	.	+	.	Parent=Os05t0498800-01
Chr05	irgsp1_rep	CDS	24562503	24563009	.	+	0	Parent=Os05t0498800-01
Chr05	irgsp1_rep	CDS	24563089	24563184	.	+	0	Parent=Os05t0498800-01
Chr05	irgsp1_rep	three_prime_UTR	24563185	24563882	.	+	.	Parent=Os05t0498800-01
Chr05	irgsp1_rep	mRNA	24560503	24564922	.	+	.	ID=Os05t0498800-02;Name=Os05t0498800-02;Locus_id=Os05g0498800;Note=Hypothetical conserved gene.;Transcript_evidence=AK109212 (DDBJ%2C Best hit);ORF_evidence=NP_001048483.2 (RefSeq);InterPro=Myb/SANT-like domain (IPR024752);NIAS_FLcDNA=002-156-D04;Expression=AK109212;TENOR=Os05t0498800-02;KEGG=Os05t0498800-02
Chr05	irgsp1_rep	CDS	24560503	24560670	.	+	0	Parent=Os05t0498800-02
Chr05	irgsp1_rep	CDS	24561848	24561944	.	+	0	Parent=Os05t0498800-02
Chr05	irgsp1_rep	CDS	24563936	24564049	.	+	2	Parent=Os05t0498800-02
Chr05	irgsp1_rep	CDS	24564129	24564307	.	+	2	Parent=Os05t0498800-02
Chr05	irgsp1_rep	three_prime_UTR	24564308	24564436	.	+	.	Parent=Os05t0498800-02
Chr05	irgsp1_rep	three_prime_UTR	24564518	24564589	.	+	.	Parent=Os05t0498800-02
Chr05	irgsp1_rep	three_prime_UTR	24564688	24564922	.	+	.	Parent=Os05t0498800-02
Chr05	irgsp1_rep	mRNA	24563082	24565201	.	-	.	ID=Os05t0498851-00;Name=Os05t0498851-00;Locus_id=Os05g0498851;Note=Hypothetical protein.;Transcript_evidence=tplb0043a14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0498851-00
Chr05	irgsp1_rep	five_prime_UTR	24564632	24565201	.	-	.	Parent=Os05t0498851-00
Chr05	irgsp1_rep	five_prime_UTR	24564004	24564458	.	-	.	Parent=Os05t0498851-00
Chr05	irgsp1_rep	five_prime_UTR	24563386	24563825	.	-	.	Parent=Os05t0498851-00
Chr05	irgsp1_rep	CDS	24563134	24563385	.	-	0	Parent=Os05t0498851-00
Chr05	irgsp1_rep	three_prime_UTR	24563082	24563133	.	-	.	Parent=Os05t0498851-00
Chr05	irgsp1_rep	mRNA	24569211	24571817	.	-	.	ID=Os05t0498900-01;Name=Os05t0498900-01;Locus_id=Os05g0498900;CGSNL Gene Symbol=RLCK189;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 189;Oryzabase Gene Symbol Synonym(s)=OsRLCK189%2C OsSTA156;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 189;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK071077 (DDBJ%2C Best hit);ORF_evidence=Q0Q5D1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023078C24;Oryzabase=18889;Expression=AK071077;TENOR=Os05t0498900-01;KEGG=Os05t0498900-01
Chr05	irgsp1_rep	five_prime_UTR	24571673	24571817	.	-	.	Parent=Os05t0498900-01
Chr05	irgsp1_rep	CDS	24571297	24571672	.	-	0	Parent=Os05t0498900-01
Chr05	irgsp1_rep	CDS	24570738	24570919	.	-	2	Parent=Os05t0498900-01
Chr05	irgsp1_rep	CDS	24570381	24570570	.	-	0	Parent=Os05t0498900-01
Chr05	irgsp1_rep	CDS	24569899	24570290	.	-	2	Parent=Os05t0498900-01
Chr05	irgsp1_rep	CDS	24569413	24569727	.	-	0	Parent=Os05t0498900-01
Chr05	irgsp1_rep	three_prime_UTR	24569211	24569412	.	-	.	Parent=Os05t0498900-01
Chr05	irgsp1_rep	mRNA	24576939	24577725	.	-	.	ID=Os05t0499100-01;Name=Os05t0499100-01;Locus_id=Os05g0499100;CGSNL Gene Symbol=GLB1;CGSNL Gene Name=LACK OF ALPHA-GLOBULIN;Oryzabase Gene Symbol Synonym(s)=glb1(t)*%2C glb1(t)%2C glb1%2C alpha-Glb%2C Glb-1%2C OsGlb1%2C Glb%2C OsEnS-77;Oryzabase Gene Name Synonym(s)=lack of alpha-globulin%2C alpha-globulin%2C 26 kDa globulin%2C 19 kDa globulin%2C 19kD globulin%2C endosperm-specific gene 77%2C Globulin23;Note=26 kDa globulin (Alpha-globulin).;Transcript_evidence=AK242943 (DDBJ%2C Best hit);ORF_evidence=NP_001152635.1 (RefSeq);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Bifunctional trypsin/alpha-amylase inhibitor (IPR013771),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=J090087L24;Oryzabase=2028;TENOR=Os05t0499100-01;KEGG=Os05t0499100-01
Chr05	irgsp1_rep	five_prime_UTR	24577653	24577725	.	-	.	Parent=Os05t0499100-01
Chr05	irgsp1_rep	CDS	24577092	24577652	.	-	0	Parent=Os05t0499100-01
Chr05	irgsp1_rep	three_prime_UTR	24576939	24577091	.	-	.	Parent=Os05t0499100-01
Chr05	irgsp1_rep	mRNA	24583251	24584927	.	+	.	ID=Os05t0499300-01;Name=Os05t0499300-01;Locus_id=Os05g0499300;CGSNL Gene Symbol=POX1;CGSNL Gene Name=PEROXIDASE 1;Oryzabase Gene Symbol Synonym(s)=Pox1(Px%2CPe)%2C PRX74%2C Px%2C Pe%2C Pox1%2C prx74;Oryzabase Gene Name Synonym(s)=Peroxidase1%2C Peroxidase 1 precursor%2C Peroxidase 1%2C Peroxidase-1%2C class III peroxidase 74;Note=Similar to Peroxidase (EC 1.11.1.7).;Transcript_evidence=AK066855 (DDBJ%2C Best hit),AK104950 (DDBJ%2C Best hit);ORF_evidence=P37834 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J013082J20,001-110-A02;Oryzabase=659;Expression=AK066855;TENOR=Os05t0499300-01;KEGG=Os05t0499300-01 (EC:1.11.1.7)
Chr05	irgsp1_rep	five_prime_UTR	24583251	24583344	.	+	.	Parent=Os05t0499300-01
Chr05	irgsp1_rep	CDS	24583345	24583551	.	+	0	Parent=Os05t0499300-01
Chr05	irgsp1_rep	CDS	24583674	24583862	.	+	0	Parent=Os05t0499300-01
Chr05	irgsp1_rep	CDS	24583976	24584138	.	+	0	Parent=Os05t0499300-01
Chr05	irgsp1_rep	CDS	24584234	24584655	.	+	2	Parent=Os05t0499300-01
Chr05	irgsp1_rep	three_prime_UTR	24584656	24584927	.	+	.	Parent=Os05t0499300-01
Chr05	irgsp1_rep	mRNA	24587145	24588920	.	+	.	ID=Os05t0499400-01;Name=Os05t0499400-01;Locus_id=Os05g0499400;Oryzabase Gene Symbol Synonym(s)=prx75;Oryzabase Gene Name Synonym(s)=class III peroxidase 75;Note=Haem peroxidase family protein.;Transcript_evidence=AK059489 (DDBJ%2C Best hit);ORF_evidence=B6TWB1 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255);NIAS_FLcDNA=001-028-G10;Oryzabase=14598;Expression=AK059489;TENOR=Os05t0499400-01;KEGG=Os05t0499400-01
Chr05	irgsp1_rep	five_prime_UTR	24587145	24587416	.	+	.	Parent=Os05t0499400-01
Chr05	irgsp1_rep	CDS	24587417	24587662	.	+	0	Parent=Os05t0499400-01
Chr05	irgsp1_rep	CDS	24587739	24587924	.	+	0	Parent=Os05t0499400-01
Chr05	irgsp1_rep	CDS	24588008	24588173	.	+	0	Parent=Os05t0499400-01
Chr05	irgsp1_rep	CDS	24588299	24588750	.	+	2	Parent=Os05t0499400-01
Chr05	irgsp1_rep	three_prime_UTR	24588751	24588920	.	+	.	Parent=Os05t0499400-01
Chr05	irgsp1_rep	mRNA	24587285	24588976	.	+	.	ID=Os05t0499400-02;Name=Os05t0499400-02;Locus_id=Os05g0499400;Oryzabase Gene Symbol Synonym(s)=prx75;Oryzabase Gene Name Synonym(s)=class III peroxidase 75;Note=Haem peroxidase family protein.;Transcript_evidence=AK068896 (DDBJ%2C Best hit);ORF_evidence=B6TWB1 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255);NIAS_FLcDNA=J013170E20;Oryzabase=14598;Expression=AK068896;TENOR=Os05t0499400-02;KEGG=Os05t0499400-02
Chr05	irgsp1_rep	five_prime_UTR	24587285	24587416	.	+	.	Parent=Os05t0499400-02
Chr05	irgsp1_rep	CDS	24587417	24587662	.	+	0	Parent=Os05t0499400-02
Chr05	irgsp1_rep	CDS	24587739	24587924	.	+	0	Parent=Os05t0499400-02
Chr05	irgsp1_rep	CDS	24588008	24588173	.	+	0	Parent=Os05t0499400-02
Chr05	irgsp1_rep	CDS	24588299	24588750	.	+	2	Parent=Os05t0499400-02
Chr05	irgsp1_rep	three_prime_UTR	24588751	24588976	.	+	.	Parent=Os05t0499400-02
Chr05	irgsp1_rep	mRNA	24587489	24588452	.	-	.	ID=Os05t0499450-00;Name=Os05t0499450-00;Locus_id=Os05g0499450;Note=Hypothetical protein.;Transcript_evidence=BT085962 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0499450-00
Chr05	irgsp1_rep	five_prime_UTR	24588160	24588452	.	-	.	Parent=Os05t0499450-00
Chr05	irgsp1_rep	CDS	24587890	24588159	.	-	0	Parent=Os05t0499450-00
Chr05	irgsp1_rep	three_prime_UTR	24587489	24587889	.	-	.	Parent=Os05t0499450-00
Chr05	irgsp1_rep	mRNA	24589278	24593259	.	-	.	ID=Os05t0499500-01;Name=Os05t0499500-01;Locus_id=Os05g0499500;Note=Similar to predicted protein.;Transcript_evidence=AK243126 (DDBJ%2C Best hit);ORF_evidence=D7NLB1 (UniProt);InterPro=Pheromone shutdown%2C TraB (IPR002816);NIAS_FLcDNA=J100029H20;TENOR=Os05t0499500-01;KEGG=Os05t0499500-01
Chr05	irgsp1_rep	five_prime_UTR	24593190	24593259	.	-	.	Parent=Os05t0499500-01
Chr05	irgsp1_rep	CDS	24592761	24593189	.	-	0	Parent=Os05t0499500-01
Chr05	irgsp1_rep	CDS	24592024	24592071	.	-	0	Parent=Os05t0499500-01
Chr05	irgsp1_rep	CDS	24591820	24591879	.	-	0	Parent=Os05t0499500-01
Chr05	irgsp1_rep	CDS	24591119	24591205	.	-	0	Parent=Os05t0499500-01
Chr05	irgsp1_rep	CDS	24590917	24591021	.	-	0	Parent=Os05t0499500-01
Chr05	irgsp1_rep	CDS	24590159	24590272	.	-	0	Parent=Os05t0499500-01
Chr05	irgsp1_rep	CDS	24589911	24590011	.	-	0	Parent=Os05t0499500-01
Chr05	irgsp1_rep	CDS	24589714	24589825	.	-	1	Parent=Os05t0499500-01
Chr05	irgsp1_rep	CDS	24589458	24589583	.	-	0	Parent=Os05t0499500-01
Chr05	irgsp1_rep	three_prime_UTR	24589278	24589457	.	-	.	Parent=Os05t0499500-01
Chr05	irgsp1_rep	mRNA	24594918	24596579	.	+	.	ID=Os05t0499600-01;Name=Os05t0499600-01;Locus_id=Os05g0499600;CGSNL Gene Symbol=UGT705A1;CGSNL Gene Name=UDP-DEPENDENT GLYCOSYLTRANSFERASE 705A1;Oryzabase Gene Symbol Synonym(s)=OsUGT705A1;Oryzabase Gene Name Synonym(s)=UDP-dependent glycosyltransferase 705A1;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK103442 (DDBJ%2C Best hit);ORF_evidence=B6U0X3 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J033129D17;Oryzabase=22218;Expression=AK103442;TENOR=Os05t0499600-01;KEGG=Os05t0499600-01
Chr05	irgsp1_rep	five_prime_UTR	24594918	24594982	.	+	.	Parent=Os05t0499600-01
Chr05	irgsp1_rep	CDS	24594983	24596443	.	+	0	Parent=Os05t0499600-01
Chr05	irgsp1_rep	three_prime_UTR	24596444	24596579	.	+	.	Parent=Os05t0499600-01
Chr05	irgsp1_rep	mRNA	24605715	24607902	.	+	.	ID=Os05t0499800-01;Name=Os05t0499800-01;Locus_id=Os05g0499800;Oryzabase Gene Symbol Synonym(s)=UGT705A3%2C OsUGT705A3;Oryzabase Gene Name Synonym(s)=Cytokinin-O-glucosyltransferase 1%2C UDP-dependent glycosyltransferase 705A3;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK103146 (DDBJ%2C Best hit);ORF_evidence=B6U0X3 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J033120I02;Oryzabase=20250;Expression=AK103146;TENOR=Os05t0499800-01;KEGG=Os05t0499800-01
Chr05	irgsp1_rep	five_prime_UTR	24605715	24606190	.	+	.	Parent=Os05t0499800-01
Chr05	irgsp1_rep	CDS	24606191	24607645	.	+	0	Parent=Os05t0499800-01
Chr05	irgsp1_rep	three_prime_UTR	24607646	24607902	.	+	.	Parent=Os05t0499800-01
Chr05	irgsp1_rep	mRNA	24605863	24607925	.	+	.	ID=Os05t0499800-02;Name=Os05t0499800-02;Locus_id=Os05g0499800;Oryzabase Gene Symbol Synonym(s)=UGT705A3%2C OsUGT705A3;Oryzabase Gene Name Synonym(s)=Cytokinin-O-glucosyltransferase 1%2C UDP-dependent glycosyltransferase 705A3;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK064392 (DDBJ%2C Best hit);ORF_evidence=B6U0X3 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=002-108-F12;Oryzabase=20250;Expression=AK064392;TENOR=Os05t0499800-02;KEGG=Os05t0499800-02
Chr05	irgsp1_rep	five_prime_UTR	24605863	24606190	.	+	.	Parent=Os05t0499800-02
Chr05	irgsp1_rep	CDS	24606191	24607645	.	+	0	Parent=Os05t0499800-02
Chr05	irgsp1_rep	three_prime_UTR	24607646	24607925	.	+	.	Parent=Os05t0499800-02
Chr05	irgsp1_rep	mRNA	24611755	24613221	.	+	.	ID=Os05t0500000-00;Name=Os05t0500000-00;Locus_id=Os05g0500000;CGSNL Gene Symbol=UGT705A2;CGSNL Gene Name=UDP-DEPENDENT GLYCOSYLTRANSFERASE 705A2;Oryzabase Gene Symbol Synonym(s)=OsUGT705A2;Oryzabase Gene Name Synonym(s)=UDP-dependent glycosyltransferase 705A2;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B6U0X3 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);Oryzabase=22219;TENOR=Os05t0500000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	24611755	24613221	.	+	0	Parent=Os05t0500000-00
Chr05	irgsp1_rep	mRNA	24611764	24613488	.	-	.	ID=Os05t0500101-01;Name=Os05t0500101-01;Locus_id=Os05g0500101;Note=Hypothetical gene.;Transcript_evidence=AK243087 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100022G07;TENOR=Os05t0500101-01;KEGG=Os05t0500101-01
Chr05	irgsp1_rep	five_prime_UTR	24612652	24613488	.	-	.	Parent=Os05t0500101-01
Chr05	irgsp1_rep	CDS	24611923	24612651	.	-	0	Parent=Os05t0500101-01
Chr05	irgsp1_rep	three_prime_UTR	24611764	24611922	.	-	.	Parent=Os05t0500101-01
Chr05	irgsp1_rep	mRNA	24616132	24619054	.	+	.	ID=Os05t0500200-01;Name=Os05t0500200-01;Locus_id=Os05g0500200;Note=Similar to UDP glucosyltransferase-1.;Transcript_evidence=AK240824 (DDBJ%2C Best hit);ORF_evidence=D7NLA9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J065013F08;TENOR=Os05t0500200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	24616132	24616203	.	+	.	Parent=Os05t0500200-01
Chr05	irgsp1_rep	CDS	24616204	24616869	.	+	0	Parent=Os05t0500200-01
Chr05	irgsp1_rep	three_prime_UTR	24616870	24619054	.	+	.	Parent=Os05t0500200-01
Chr05	irgsp1_rep	mRNA	24620286	24621535	.	-	.	ID=Os05t0500300-00;Name=Os05t0500300-00;Locus_id=Os05g0500300;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FKZ3 (UniProt);TENOR=Os05t0500300-00
Chr05	irgsp1_rep	CDS	24621340	24621535	.	-	0	Parent=Os05t0500300-00
Chr05	irgsp1_rep	CDS	24621227	24621265	.	-	2	Parent=Os05t0500300-00
Chr05	irgsp1_rep	CDS	24620968	24621167	.	-	2	Parent=Os05t0500300-00
Chr05	irgsp1_rep	CDS	24620286	24620333	.	-	0	Parent=Os05t0500300-00
Chr05	irgsp1_rep	mRNA	24622519	24622574	.	+	.	ID=Os05t0500350-00;Name=Os05t0500350-00;Locus_id=Os05g0500350;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0500350-00
Chr05	irgsp1_rep	exon	24622519	24622574	.	+	.	Parent=Os05t0500350-00
Chr05	irgsp1_rep	mRNA	24623392	24624580	.	-	.	ID=Os05t0500400-01;Name=Os05t0500400-01;Locus_id=Os05g0500400;Note=Domain of unknown function DUF1995 domain containing protein.;Transcript_evidence=AK110277 (DDBJ%2C Best hit);ORF_evidence=A2Y673 (UniProt);InterPro=Domain of unknown function DUF1995 (IPR018962);NIAS_FLcDNA=002-163-D09;Expression=AK110277;TENOR=Os05t0500400-01;KEGG=Os05t0500400-01
Chr05	irgsp1_rep	five_prime_UTR	24624574	24624580	.	-	.	Parent=Os05t0500400-01
Chr05	irgsp1_rep	CDS	24623551	24624573	.	-	0	Parent=Os05t0500400-01
Chr05	irgsp1_rep	three_prime_UTR	24623392	24623550	.	-	.	Parent=Os05t0500400-01
Chr05	irgsp1_rep	mRNA	24626358	24626852	.	-	.	ID=Os05t0500450-00;Name=Os05t0500450-00;Locus_id=Os05g0500450;Note=Similar to allyl alcohol dehydrogenase-like protein.;Transcript_evidence=CT836386 (DDBJ%2C Best hit);ORF_evidence=NP_001152707.1 (RefSeq);TENOR=Os05t0500450-00;KEGG=Os05t0500450-00
Chr05	irgsp1_rep	five_prime_UTR	24626803	24626852	.	-	.	Parent=Os05t0500450-00
Chr05	irgsp1_rep	CDS	24626503	24626802	.	-	0	Parent=Os05t0500450-00
Chr05	irgsp1_rep	three_prime_UTR	24626358	24626502	.	-	.	Parent=Os05t0500450-00
Chr05	irgsp1_rep	mRNA	24627221	24629101	.	+	.	ID=Os05t0500500-01;Name=Os05t0500500-01;Locus_id=Os05g0500500;Note=Heat shock protein Hsp20 domain containing protein.;Transcript_evidence=AK110627 (DDBJ%2C Best hit);ORF_evidence=Q6AUW3 (UniProt);InterPro=Heat shock protein Hsp20 (IPR002068),HSP20-like chaperone (IPR008978);NIAS_FLcDNA=002-169-B04;Expression=AK110627;TENOR=Os05t0500500-01;KEGG=Os05t0500500-01
Chr05	irgsp1_rep	five_prime_UTR	24627221	24627274	.	+	.	Parent=Os05t0500500-01
Chr05	irgsp1_rep	CDS	24627275	24627608	.	+	0	Parent=Os05t0500500-01
Chr05	irgsp1_rep	CDS	24628484	24628761	.	+	2	Parent=Os05t0500500-01
Chr05	irgsp1_rep	three_prime_UTR	24628762	24629101	.	+	.	Parent=Os05t0500500-01
Chr05	irgsp1_rep	mRNA	24631172	24632713	.	+	.	ID=Os05t0500600-01;Name=Os05t0500600-01;Locus_id=Os05g0500600;CGSNL Gene Symbol=GRAS29;CGSNL Gene Name=GRAS PROTEIN 29;Oryzabase Gene Symbol Synonym(s)=OsGRAS-29%2C OsGRAS29%2C GRAS-29;Oryzabase Gene Name Synonym(s)=GRAS protein 29;Note=GRAS transcription factor domain containing protein.;Transcript_evidence=AK070489 (DDBJ%2C Best hit);ORF_evidence=XP_002309852.1 (RefSeq);InterPro=Transcription factor GRAS (IPR005202);NIAS_FLcDNA=J023050L12;Oryzabase=22795;Expression=AK070489;TENOR=Os05t0500600-01;KEGG=Os05t0500600-01
Chr05	irgsp1_rep	five_prime_UTR	24631172	24631245	.	+	.	Parent=Os05t0500600-01
Chr05	irgsp1_rep	CDS	24631246	24632523	.	+	0	Parent=Os05t0500600-01
Chr05	irgsp1_rep	three_prime_UTR	24632524	24632713	.	+	.	Parent=Os05t0500600-01
Chr05	irgsp1_rep	mRNA	24633029	24633940	.	+	.	ID=Os05t0500700-00;Name=Os05t0500700-00;Locus_id=Os05g0500700;Note=Hypothetical conserved gene.;Transcript_evidence=CT836413 (DDBJ%2C Best hit);ORF_evidence=NP_001055966.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Methyltransferase type 11 (IPR013216);TENOR=Os05t0500700-00;KEGG=Os05t0500700-00
Chr05	irgsp1_rep	five_prime_UTR	24633029	24633029	.	+	.	Parent=Os05t0500700-00
Chr05	irgsp1_rep	CDS	24633030	24633761	.	+	0	Parent=Os05t0500700-00
Chr05	irgsp1_rep	three_prime_UTR	24633762	24633940	.	+	.	Parent=Os05t0500700-00
Chr05	irgsp1_rep	mRNA	24643665	24645918	.	-	.	ID=Os05t0500900-01;Name=Os05t0500900-01;Locus_id=Os05g0500900;CGSNL Gene Symbol=GH3-4;CGSNL Gene Name=GH3-4;Oryzabase Gene Symbol Synonym(s)=OsGH3-4%2C OsGH3.4%2C GH3.4;Note=Similar to Indole-3-acetic acid-amido synthetase GH3.5 (EC 6.3.2.-) (Auxin- responsive GH3-like protein 5) (AtGH3-5).;Transcript_evidence=AK101932 (DDBJ%2C Best hit);ORF_evidence=XP_002319260.1 (RefSeq);InterPro=GH3 auxin-responsive promoter (IPR004993);NIAS_FLcDNA=J033073H12;Oryzabase=11624;Expression=AK101932;TENOR=Os05t0500900-01;KEGG=Os05t0500900-01
Chr05	irgsp1_rep	five_prime_UTR	24645834	24645918	.	-	.	Parent=Os05t0500900-01
Chr05	irgsp1_rep	CDS	24645496	24645833	.	-	0	Parent=Os05t0500900-01
Chr05	irgsp1_rep	CDS	24643854	24645405	.	-	1	Parent=Os05t0500900-01
Chr05	irgsp1_rep	three_prime_UTR	24643665	24643853	.	-	.	Parent=Os05t0500900-01
Chr05	irgsp1_rep	mRNA	24643920	24645883	.	+	.	ID=Os05t0500950-00;Name=Os05t0500950-00;Locus_id=Os05g0500950;Note=Hypothetical protein.;Transcript_evidence=tplb0045h20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0500950-00
Chr05	irgsp1_rep	CDS	24643920	24645396	.	+	0	Parent=Os05t0500950-00
Chr05	irgsp1_rep	CDS	24645487	24645851	.	+	2	Parent=Os05t0500950-00
Chr05	irgsp1_rep	three_prime_UTR	24645852	24645883	.	+	.	Parent=Os05t0500950-00
Chr05	irgsp1_rep	mRNA	24647103	24648137	.	-	.	ID=Os05t0501001-01;Name=Os05t0501001-01;Locus_id=Os05g0501001;Note=Hypothetical gene.;Transcript_evidence=AK241688 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065194K10;TENOR=Os05t0501001-01;KEGG=Os05t0501001-01
Chr05	irgsp1_rep	five_prime_UTR	24647869	24648137	.	-	.	Parent=Os05t0501001-01
Chr05	irgsp1_rep	five_prime_UTR	24647750	24647774	.	-	.	Parent=Os05t0501001-01
Chr05	irgsp1_rep	CDS	24647409	24647749	.	-	0	Parent=Os05t0501001-01
Chr05	irgsp1_rep	CDS	24647289	24647301	.	-	1	Parent=Os05t0501001-01
Chr05	irgsp1_rep	three_prime_UTR	24647103	24647288	.	-	.	Parent=Os05t0501001-01
Chr05	irgsp1_rep	mRNA	24663679	24666335	.	+	.	ID=Os05t0501200-00;Name=Os05t0501200-00;Locus_id=Os05g0501200;Oryzabase Gene Symbol Synonym(s)=OsbHLH067;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 067;Note=Hypothetical conserved gene.;Transcript_evidence=CT837834 (DDBJ%2C Best hit);ORF_evidence=NP_001055968.1 (RefSeq);Oryzabase=15354;TENOR=Os05t0501200-00;KEGG=Os05t0501200-00
Chr05	irgsp1_rep	five_prime_UTR	24663679	24663913	.	+	.	Parent=Os05t0501200-00
Chr05	irgsp1_rep	CDS	24663914	24664140	.	+	0	Parent=Os05t0501200-00
Chr05	irgsp1_rep	CDS	24664266	24664605	.	+	1	Parent=Os05t0501200-00
Chr05	irgsp1_rep	three_prime_UTR	24664606	24664806	.	+	.	Parent=Os05t0501200-00
Chr05	irgsp1_rep	three_prime_UTR	24664985	24665050	.	+	.	Parent=Os05t0501200-00
Chr05	irgsp1_rep	three_prime_UTR	24665263	24665328	.	+	.	Parent=Os05t0501200-00
Chr05	irgsp1_rep	three_prime_UTR	24665484	24665540	.	+	.	Parent=Os05t0501200-00
Chr05	irgsp1_rep	three_prime_UTR	24665957	24666335	.	+	.	Parent=Os05t0501200-00
Chr05	irgsp1_rep	mRNA	24669675	24673123	.	-	.	ID=Os05t0501300-01;Name=Os05t0501300-01;Locus_id=Os05g0501300;Note=Similar to Flavoprotein wrbA (Trp repressor binding protein).;Transcript_evidence=AK059889 (DDBJ%2C Best hit);ORF_evidence=B6TFN1 (UniProt);GO=Biological Process: negative regulation of transcription%2C DNA-dependent (GO:0045892),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=NADPH-dependent FMN reductase (IPR005025),Flavodoxin/nitric oxide synthase (IPR008254),Flavoprotein WrbA (IPR010089);NIAS_FLcDNA=006-208-C11;Expression=AK059889;TENOR=Os05t0501300-01;KEGG=Os05t0501300-01
Chr05	irgsp1_rep	five_prime_UTR	24673031	24673123	.	-	.	Parent=Os05t0501300-01
Chr05	irgsp1_rep	CDS	24673008	24673030	.	-	0	Parent=Os05t0501300-01
Chr05	irgsp1_rep	CDS	24670943	24671036	.	-	1	Parent=Os05t0501300-01
Chr05	irgsp1_rep	CDS	24669882	24670382	.	-	0	Parent=Os05t0501300-01
Chr05	irgsp1_rep	three_prime_UTR	24669675	24669881	.	-	.	Parent=Os05t0501300-01
Chr05	irgsp1_rep	mRNA	24669876	24671036	.	+	.	ID=Os05t0501325-00;Name=Os05t0501325-00;Locus_id=Os05g0501325;Note=Conserved hypothetical protein.;Transcript_evidence=BT017374 (DDBJ);ORF_evidence=C0HGI0 (UniProt);TENOR=Os05t0501325-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	24669876	24670083	.	+	.	Parent=Os05t0501325-00
Chr05	irgsp1_rep	CDS	24670084	24670371	.	+	0	Parent=Os05t0501325-00
Chr05	irgsp1_rep	CDS	24670932	24671018	.	+	0	Parent=Os05t0501325-00
Chr05	irgsp1_rep	three_prime_UTR	24671019	24671036	.	+	.	Parent=Os05t0501325-00
Chr05	irgsp1_rep	mRNA	24675289	24675934	.	-	.	ID=Os05t0501350-00;Name=Os05t0501350-00;Locus_id=Os05g0501350;Oryzabase Gene Symbol Synonym(s)=OsSTA157;Note=Similar to Cyclin-B1-5.;Transcript_evidence=AJ606019 (DDBJ);ORF_evidence=Q0DH40 (UniProt);Oryzabase=19443;TENOR=Os05t0501350-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	24675771	24675934	.	-	0	Parent=Os05t0501350-00
Chr05	irgsp1_rep	CDS	24675289	24675676	.	-	1	Parent=Os05t0501350-00
Chr05	irgsp1_rep	mRNA	24676774	24682608	.	+	.	ID=Os05t0501400-01;Name=Os05t0501400-01;Locus_id=Os05g0501400;Note=Similar to Receptor-like protein kinase 5.;Transcript_evidence=AK110116 (DDBJ%2C Best hit);ORF_evidence=Q7XJ40 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Epidermal growth factor-like%2C type 3 (IPR000742),S-locus glycoprotein (IPR000858),Serine-threonine/tyrosine-protein kinase (IPR001245),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Tyrosine-protein kinase%2C catalytic domain (IPR020635),S-locus receptor kinase%2C C-terminal (IPR021820);NIAS_FLcDNA=002-161-B01;Expression=AK110116;TENOR=Os05t0501400-01;KEGG=Os05t0501400-01
Chr05	irgsp1_rep	five_prime_UTR	24676774	24676811	.	+	.	Parent=Os05t0501400-01
Chr05	irgsp1_rep	CDS	24676812	24678108	.	+	0	Parent=Os05t0501400-01
Chr05	irgsp1_rep	CDS	24680524	24680658	.	+	2	Parent=Os05t0501400-01
Chr05	irgsp1_rep	CDS	24680782	24680954	.	+	2	Parent=Os05t0501400-01
Chr05	irgsp1_rep	CDS	24681219	24681429	.	+	0	Parent=Os05t0501400-01
Chr05	irgsp1_rep	CDS	24681507	24681744	.	+	2	Parent=Os05t0501400-01
Chr05	irgsp1_rep	CDS	24681854	24682004	.	+	1	Parent=Os05t0501400-01
Chr05	irgsp1_rep	CDS	24682128	24682436	.	+	0	Parent=Os05t0501400-01
Chr05	irgsp1_rep	three_prime_UTR	24682437	24682608	.	+	.	Parent=Os05t0501400-01
Chr05	irgsp1_rep	mRNA	24676812	24682436	.	-	.	ID=Os05t0501500-00;Name=Os05t0501500-00;Locus_id=Os05g0501500;Note=Hypothetical protein.;Transcript_evidence=tplb0048b10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0501500-00
Chr05	irgsp1_rep	five_prime_UTR	24682125	24682436	.	-	.	Parent=Os05t0501500-00
Chr05	irgsp1_rep	five_prime_UTR	24681854	24681995	.	-	.	Parent=Os05t0501500-00
Chr05	irgsp1_rep	five_prime_UTR	24681485	24681744	.	-	.	Parent=Os05t0501500-00
Chr05	irgsp1_rep	five_prime_UTR	24681201	24681415	.	-	.	Parent=Os05t0501500-00
Chr05	irgsp1_rep	five_prime_UTR	24680890	24680935	.	-	.	Parent=Os05t0501500-00
Chr05	irgsp1_rep	CDS	24680785	24680889	.	-	0	Parent=Os05t0501500-00
Chr05	irgsp1_rep	CDS	24680522	24680665	.	-	0	Parent=Os05t0501500-00
Chr05	irgsp1_rep	CDS	24676812	24678104	.	-	0	Parent=Os05t0501500-00
Chr05	irgsp1_rep	mRNA	24691255	24695481	.	+	.	ID=Os05t0501600-01;Name=Os05t0501600-01;Locus_id=Os05g0501600;Note=Leucine-rich repeat%2C typical subtype containing protein.;Transcript_evidence=AK100270 (DDBJ%2C Best hit);ORF_evidence=B8AZQ8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591);NIAS_FLcDNA=J023068C13;Expression=AK100270;TENOR=Os05t0501600-01;KEGG=Os05t0501600-01
Chr05	irgsp1_rep	five_prime_UTR	24691255	24691403	.	+	.	Parent=Os05t0501600-01
Chr05	irgsp1_rep	five_prime_UTR	24692244	24692506	.	+	.	Parent=Os05t0501600-01
Chr05	irgsp1_rep	CDS	24692507	24692557	.	+	0	Parent=Os05t0501600-01
Chr05	irgsp1_rep	CDS	24692663	24693950	.	+	0	Parent=Os05t0501600-01
Chr05	irgsp1_rep	CDS	24694077	24694223	.	+	2	Parent=Os05t0501600-01
Chr05	irgsp1_rep	CDS	24694579	24695213	.	+	2	Parent=Os05t0501600-01
Chr05	irgsp1_rep	three_prime_UTR	24695214	24695481	.	+	.	Parent=Os05t0501600-01
Chr05	irgsp1_rep	mRNA	24696310	24697077	.	-	.	ID=Os05t0501650-00;Name=Os05t0501650-00;Locus_id=Os05g0501650;Note=Hypothetical protein.;Transcript_evidence=BT016476 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0501650-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	24697077	24697077	.	-	.	Parent=Os05t0501650-00
Chr05	irgsp1_rep	CDS	24696312	24697076	.	-	0	Parent=Os05t0501650-00
Chr05	irgsp1_rep	three_prime_UTR	24696310	24696311	.	-	.	Parent=Os05t0501650-00
Chr05	irgsp1_rep	mRNA	24696226	24699271	.	+	.	ID=Os05t0501700-01;Name=Os05t0501700-01;Locus_id=Os05g0501700;Note=Rossmann-like alpha/beta/alpha sandwich fold domain containing protein.;Transcript_evidence=AK060312 (DDBJ%2C Best hit);ORF_evidence=B6T8U5 (UniProt);GO=Biological Process: response to stress (GO:0006950);InterPro=Universal stress protein A (IPR006015),UspA (IPR006016),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=001-007-C02;Expression=AK060312;TENOR=Os05t0501700-01;KEGG=Os05t0501700-01
Chr05	irgsp1_rep	five_prime_UTR	24696226	24696314	.	+	.	Parent=Os05t0501700-01
Chr05	irgsp1_rep	CDS	24696315	24697113	.	+	0	Parent=Os05t0501700-01
Chr05	irgsp1_rep	CDS	24699043	24699050	.	+	2	Parent=Os05t0501700-01
Chr05	irgsp1_rep	three_prime_UTR	24699051	24699271	.	+	.	Parent=Os05t0501700-01
Chr05	irgsp1_rep	mRNA	24702102	24703666	.	-	.	ID=Os05t0501800-01;Name=Os05t0501800-01;Locus_id=Os05g0501800;RAP-DB Gene Symbol Synonym(s)=OsSPL;RAP-DB Gene Name Synonym(s)=SPOROCYTELESS;CGSNL Gene Symbol=SPL;CGSNL Gene Name=SPOROCYTELESS;Oryzabase Gene Symbol Synonym(s)=OsSPL;Note=SPL-like%2C EAR-containing (SPEAR) protein%2C Regulation of meiotic fate acquisition;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;Manual Curation=March 13%2C 2018;Literature_PMID=29479720;Oryzabase=22328;TENOR=Os05t0501800-00;KEGG=Os05t0501800-00;Subcellular location=nucleus (GO:0005634)
Chr05	irgsp1_rep	five_prime_UTR	24703631	24703666	.	-	.	Parent=Os05t0501800-01
Chr05	irgsp1_rep	CDS	24702902	24703630	.	-	0	Parent=Os05t0501800-01
Chr05	irgsp1_rep	CDS	24702671	24702787	.	-	0	Parent=Os05t0501800-01
Chr05	irgsp1_rep	CDS	24702380	24702583	.	-	0	Parent=Os05t0501800-01
Chr05	irgsp1_rep	three_prime_UTR	24702102	24702379	.	-	.	Parent=Os05t0501800-01
Chr05	irgsp1_rep	mRNA	24711970	24716664	.	+	.	ID=Os05t0502000-01;Name=Os05t0502000-01;Locus_id=Os05g0502000;RAP-DB Gene Symbol Synonym(s)=OsCNGC16;RAP-DB Gene Name Synonym(s)=cyclic nucleotide-gated ion channel 16;CGSNL Gene Symbol=CNGC9;CGSNL Gene Name=CYCLIC NUCLEOTIDE GATED CHANNEL 9;Oryzabase Gene Symbol Synonym(s)=OsCNGC9%2C OsCNGC16;Oryzabase Gene Name Synonym(s)=Cyclic nucleotide gated channel 9%2C Cyclic nucleotide-gated ion channel 16;Note=Cyclic nucleotide-gated ion channel (CNGC) protein%2C Heat and chilling tolerance%2C Modulation of calcium signals in response to temperature stress;Transcript_evidence=AK288592;ORF_evidence=Q60EI8;GO=Biological Process: ion transport (GO:0006811),Biological Process: transmembrane transport (GO:0055085),Molecular Function: ion channel activity (GO:0005216),Cellular Component: membrane (GO:0016020);InterPro=Cyclic nucleotide-binding-like (IPR018490),RmlC-like jelly roll fold (IPR014710),Ion transport domain (IPR005821),Cyclic nucleotide-binding domain (IPR000595);NIAS_FLcDNA=J090051B06;Manual Curation=June 15%2C 2020;Literature_PMID=32527735;Oryzabase=15482;TENOR=Os05t0502000-01;KEGG=Os05t0502000-01;Subcellular location=plasma membrane (GO:0005886)
Chr05	irgsp1_rep	five_prime_UTR	24711970	24712105	.	+	.	Parent=Os05t0502000-01
Chr05	irgsp1_rep	CDS	24712106	24712693	.	+	0	Parent=Os05t0502000-01
Chr05	irgsp1_rep	CDS	24713799	24714014	.	+	0	Parent=Os05t0502000-01
Chr05	irgsp1_rep	CDS	24714106	24714431	.	+	0	Parent=Os05t0502000-01
Chr05	irgsp1_rep	CDS	24715096	24715528	.	+	1	Parent=Os05t0502000-01
Chr05	irgsp1_rep	CDS	24715959	24716471	.	+	0	Parent=Os05t0502000-01
Chr05	irgsp1_rep	three_prime_UTR	24716472	24716664	.	+	.	Parent=Os05t0502000-01
Chr05	irgsp1_rep	mRNA	24715439	24716516	.	-	.	ID=Os05t0502101-00;Name=Os05t0502101-00;Locus_id=Os05g0502101;Note=Non-protein coding transcript.;Transcript_evidence=BT087158 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0502101-00
Chr05	irgsp1_rep	exon	24715959	24716516	.	-	.	Parent=Os05t0502101-00
Chr05	irgsp1_rep	exon	24715439	24715527	.	-	.	Parent=Os05t0502101-00
Chr05	irgsp1_rep	mRNA	24723804	24723871	.	+	.	ID=Os05t0502150-00;Name=Os05t0502150-00;Locus_id=Os05g0502150;Note=Non-protein coding transcript.;Transcript_evidence=X06284 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0502150-00
Chr05	irgsp1_rep	exon	24723804	24723871	.	+	.	Parent=Os05t0502150-00
Chr05	irgsp1_rep	mRNA	24724324	24727259	.	+	.	ID=Os05t0502200-01;Name=Os05t0502200-01;Locus_id=Os05g0502200;Note=Phospholipid/glycerol acyltransferase domain containing protein.;Transcript_evidence=AK064440 (DDBJ%2C Best hit);ORF_evidence=NP_001151948.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Phospholipid/glycerol acyltransferase (IPR002123);NIAS_FLcDNA=002-110-E03;Expression=AK064440;TENOR=Os05t0502200-01;KEGG=Os05t0502200-01
Chr05	irgsp1_rep	five_prime_UTR	24724324	24724414	.	+	.	Parent=Os05t0502200-01
Chr05	irgsp1_rep	five_prime_UTR	24725242	24725333	.	+	.	Parent=Os05t0502200-01
Chr05	irgsp1_rep	CDS	24725334	24725956	.	+	0	Parent=Os05t0502200-01
Chr05	irgsp1_rep	CDS	24726267	24726397	.	+	1	Parent=Os05t0502200-01
Chr05	irgsp1_rep	CDS	24726649	24727088	.	+	2	Parent=Os05t0502200-01
Chr05	irgsp1_rep	three_prime_UTR	24727089	24727259	.	+	.	Parent=Os05t0502200-01
Chr05	irgsp1_rep	mRNA	24727453	24727520	.	+	.	ID=Os05t0502300-00;Name=Os05t0502300-00;Locus_id=Os05g0502300;Note=Non-protein coding transcript.;Transcript_evidence=X06284 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0502300-00
Chr05	irgsp1_rep	exon	24727453	24727520	.	+	.	Parent=Os05t0502300-00
Chr05	irgsp1_rep	mRNA	24728847	24728914	.	+	.	ID=Os05t0502400-00;Name=Os05t0502400-00;Locus_id=Os05g0502400;Note=Non-protein coding transcript.;Transcript_evidence=X06284 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0502400-00
Chr05	irgsp1_rep	exon	24728847	24728914	.	+	.	Parent=Os05t0502400-00
Chr05	irgsp1_rep	mRNA	24729478	24732816	.	-	.	ID=Os05t0502500-01;Name=Os05t0502500-01;Locus_id=Os05g0502500;Note=Conserved hypothetical protein.;Transcript_evidence=AK060111 (DDBJ%2C Best hit);ORF_evidence=B8AZR0 (UniProt);NIAS_FLcDNA=006-308-D05;Expression=AK060111;TENOR=Os05t0502500-01;KEGG=Os05t0502500-01
Chr05	irgsp1_rep	five_prime_UTR	24732785	24732816	.	-	.	Parent=Os05t0502500-01
Chr05	irgsp1_rep	CDS	24732413	24732784	.	-	0	Parent=Os05t0502500-01
Chr05	irgsp1_rep	CDS	24731809	24731886	.	-	0	Parent=Os05t0502500-01
Chr05	irgsp1_rep	CDS	24731279	24731313	.	-	0	Parent=Os05t0502500-01
Chr05	irgsp1_rep	CDS	24731121	24731176	.	-	1	Parent=Os05t0502500-01
Chr05	irgsp1_rep	CDS	24730459	24730560	.	-	2	Parent=Os05t0502500-01
Chr05	irgsp1_rep	CDS	24729818	24729879	.	-	2	Parent=Os05t0502500-01
Chr05	irgsp1_rep	three_prime_UTR	24729478	24729817	.	-	.	Parent=Os05t0502500-01
Chr05	irgsp1_rep	mRNA	24735332	24736903	.	+	.	ID=Os05t0502700-00;Name=Os05t0502700-00;Locus_id=Os05g0502700;Note=Similar to predicted protein.;Transcript_evidence=BT040752 (DDBJ);ORF_evidence=B6TJ26 (UniProt);InterPro=Developmental regulator%2C ULTRAPETALA (IPR020533);TENOR=Os05t0502700-00;KEGG=Os05t0502700-00
Chr05	irgsp1_rep	five_prime_UTR	24735332	24735519	.	+	.	Parent=Os05t0502700-00
Chr05	irgsp1_rep	CDS	24735520	24735718	.	+	0	Parent=Os05t0502700-00
Chr05	irgsp1_rep	CDS	24736257	24736581	.	+	2	Parent=Os05t0502700-00
Chr05	irgsp1_rep	CDS	24736726	24736903	.	+	1	Parent=Os05t0502700-00
Chr05	irgsp1_rep	mRNA	24739011	24742478	.	-	.	ID=Os05t0502800-01;Name=Os05t0502800-01;Locus_id=Os05g0502800;Note=NAF1 domain containing protein.;Transcript_evidence=AK064242 (DDBJ%2C Best hit),AK065486 (DDBJ%2C Best hit);ORF_evidence=A2Y695 (UniProt);GO=Biological Process: snRNA pseudouridine synthesis (GO:0031120),Biological Process: ribosome biogenesis (GO:0042254),Molecular Function: snoRNA binding (GO:0030515);InterPro=H/ACA ribonucleoprotein complex%2C subunit Gar1/Naf1 (IPR007504),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000);NIAS_FLcDNA=002-105-B06,J013020M22;Expression=AK064242;TENOR=Os05t0502800-01;KEGG=Os05t0502800-01
Chr05	irgsp1_rep	five_prime_UTR	24742170	24742478	.	-	.	Parent=Os05t0502800-01
Chr05	irgsp1_rep	CDS	24741423	24742169	.	-	0	Parent=Os05t0502800-01
Chr05	irgsp1_rep	CDS	24740979	24741056	.	-	0	Parent=Os05t0502800-01
Chr05	irgsp1_rep	CDS	24739174	24740394	.	-	0	Parent=Os05t0502800-01
Chr05	irgsp1_rep	three_prime_UTR	24739011	24739173	.	-	.	Parent=Os05t0502800-01
Chr05	irgsp1_rep	mRNA	24762188	24767756	.	-	.	ID=Os05t0503000-01;Name=Os05t0503000-01;Locus_id=Os05g0503000;Note=Similar to Secretory carrier membrane protein.;Transcript_evidence=AK068335 (DDBJ%2C Best hit),AK104049 (DDBJ%2C Best hit);ORF_evidence=Q60EA5 (UniProt);GO=Biological Process: protein transport (GO:0015031),Cellular Component: integral to membrane (GO:0016021);InterPro=SCAMP (IPR007273);NIAS_FLcDNA=J013149D04,001-022-H12;Expression=AK068335;TENOR=Os05t0503000-01;KEGG=Os05t0503000-01
Chr05	irgsp1_rep	five_prime_UTR	24767644	24767756	.	-	.	Parent=Os05t0503000-01
Chr05	irgsp1_rep	CDS	24767587	24767643	.	-	0	Parent=Os05t0503000-01
Chr05	irgsp1_rep	CDS	24766636	24766734	.	-	0	Parent=Os05t0503000-01
Chr05	irgsp1_rep	CDS	24766295	24766357	.	-	0	Parent=Os05t0503000-01
Chr05	irgsp1_rep	CDS	24765559	24765592	.	-	0	Parent=Os05t0503000-01
Chr05	irgsp1_rep	CDS	24764911	24765033	.	-	2	Parent=Os05t0503000-01
Chr05	irgsp1_rep	CDS	24764562	24764624	.	-	2	Parent=Os05t0503000-01
Chr05	irgsp1_rep	CDS	24764376	24764469	.	-	2	Parent=Os05t0503000-01
Chr05	irgsp1_rep	CDS	24764230	24764275	.	-	1	Parent=Os05t0503000-01
Chr05	irgsp1_rep	CDS	24764044	24764111	.	-	0	Parent=Os05t0503000-01
Chr05	irgsp1_rep	CDS	24763345	24763393	.	-	1	Parent=Os05t0503000-01
Chr05	irgsp1_rep	CDS	24763043	24763108	.	-	0	Parent=Os05t0503000-01
Chr05	irgsp1_rep	CDS	24762578	24762664	.	-	0	Parent=Os05t0503000-01
Chr05	irgsp1_rep	three_prime_UTR	24762188	24762577	.	-	.	Parent=Os05t0503000-01
Chr05	irgsp1_rep	mRNA	24774717	24775782	.	+	.	ID=Os05t0503100-00;Name=Os05t0503100-00;Locus_id=Os05g0503100;Note=Hypothetical conserved gene.;Transcript_evidence=AK334234 (DDBJ);ORF_evidence=Q60EA4 (UniProt);TENOR=Os05t0503100-00;KEGG=Os05t0503100-00
Chr05	irgsp1_rep	CDS	24774717	24775631	.	+	0	Parent=Os05t0503100-00
Chr05	irgsp1_rep	three_prime_UTR	24775632	24775782	.	+	.	Parent=Os05t0503100-00
Chr05	irgsp1_rep	mRNA	24777441	24782045	.	-	.	ID=Os05t0503300-02;Name=Os05t0503300-02;Locus_id=Os05g0503300;Note=Similar to Sulfite reductase (Fragment).;Transcript_evidence=AK073969 (DDBJ%2C Best hit),AK103289 (DDBJ%2C Best hit);ORF_evidence=O23813 (UniProt);NIAS_FLcDNA=J033075F01,J033124O04;Expression=AK073969;TENOR=Os05t0503300-02;KEGG=Os05t0503300-02 (EC:1.8.7.1)
Chr05	irgsp1_rep	five_prime_UTR	24781955	24782045	.	-	.	Parent=Os05t0503300-02
Chr05	irgsp1_rep	CDS	24781778	24781954	.	-	0	Parent=Os05t0503300-02
Chr05	irgsp1_rep	CDS	24780420	24781202	.	-	0	Parent=Os05t0503300-02
Chr05	irgsp1_rep	CDS	24780034	24780330	.	-	0	Parent=Os05t0503300-02
Chr05	irgsp1_rep	CDS	24779329	24779526	.	-	0	Parent=Os05t0503300-02
Chr05	irgsp1_rep	CDS	24778886	24779020	.	-	0	Parent=Os05t0503300-02
Chr05	irgsp1_rep	CDS	24778685	24778801	.	-	0	Parent=Os05t0503300-02
Chr05	irgsp1_rep	CDS	24778401	24778559	.	-	0	Parent=Os05t0503300-02
Chr05	irgsp1_rep	CDS	24777759	24777818	.	-	0	Parent=Os05t0503300-02
Chr05	irgsp1_rep	three_prime_UTR	24777441	24777758	.	-	.	Parent=Os05t0503300-02
Chr05	irgsp1_rep	mRNA	24777474	24781995	.	-	.	ID=Os05t0503300-03;Name=Os05t0503300-03;Locus_id=Os05g0503300;Note=Similar to ferredoxin-sulfite reductase precursor.;Transcript_evidence=AK100773 (DDBJ%2C Best hit);ORF_evidence=O23813 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: heme binding (GO:0020037),Molecular Function: sulfite reductase (ferredoxin) activity (GO:0050311),Molecular Function: iron-sulfur cluster binding (GO:0051536),Molecular Function: 4 iron%2C 4 sulfur cluster binding (GO:0051539);InterPro=Nitrite/sulphite reductase%2C hemoprotein beta-component%2C ferrodoxin-like (IPR005117),Nitrite/sulphite reductase iron-sulphur/siroheam-binding site (IPR006066),Nitrite/sulphite reductase 4Fe-4S domain (IPR006067),Sulphite reductase%2C ferredoxin dependent (IPR011787);NIAS_FLcDNA=J023120B12;Expression=AK100773;TENOR=Os05t0503300-03;KEGG=Os05t0503300-03 (EC:1.8.7.1)
Chr05	irgsp1_rep	five_prime_UTR	24781955	24781995	.	-	.	Parent=Os05t0503300-03
Chr05	irgsp1_rep	CDS	24781778	24781954	.	-	0	Parent=Os05t0503300-03
Chr05	irgsp1_rep	CDS	24780420	24781202	.	-	0	Parent=Os05t0503300-03
Chr05	irgsp1_rep	CDS	24780034	24780330	.	-	0	Parent=Os05t0503300-03
Chr05	irgsp1_rep	CDS	24779329	24779526	.	-	0	Parent=Os05t0503300-03
Chr05	irgsp1_rep	CDS	24778886	24779020	.	-	0	Parent=Os05t0503300-03
Chr05	irgsp1_rep	CDS	24778685	24778801	.	-	0	Parent=Os05t0503300-03
Chr05	irgsp1_rep	CDS	24778517	24778559	.	-	0	Parent=Os05t0503300-03
Chr05	irgsp1_rep	CDS	24777535	24777551	.	-	2	Parent=Os05t0503300-03
Chr05	irgsp1_rep	three_prime_UTR	24777474	24777534	.	-	.	Parent=Os05t0503300-03
Chr05	irgsp1_rep	mRNA	24783622	24784068	.	+	.	ID=Os05t0503500-00;Name=Os05t0503500-00;Locus_id=Os05g0503500;Note=Non-protein coding transcript.;Transcript_evidence=CT836371 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os05t0503500-00
Chr05	irgsp1_rep	exon	24783622	24784068	.	+	.	Parent=Os05t0503500-00
Chr05	irgsp1_rep	mRNA	24784943	24785394	.	-	.	ID=Os05t0503650-01;Name=Os05t0503650-01;Locus_id=Os05g0503650;Note=Non-protein coding transcript.;Transcript_evidence=AK242243 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J075180F02;TENOR=Os05t0503650-01
Chr05	irgsp1_rep	exon	24784943	24785394	.	-	.	Parent=Os05t0503650-01
Chr05	irgsp1_rep	mRNA	24835787	24839449	.	-	.	ID=Os05t0504800-01;Name=Os05t0504800-01;Locus_id=Os05g0504800;Note=Similar to Protein kinase domain containing protein.;Transcript_evidence=AK288470 (DDBJ%2C Best hit);ORF_evidence=Q53J42 (UniProt);NIAS_FLcDNA=J090037J05;TENOR=Os05t0504800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	24837709	24839449	.	-	.	Parent=Os05t0504800-01
Chr05	irgsp1_rep	CDS	24837406	24837708	.	-	0	Parent=Os05t0504800-01
Chr05	irgsp1_rep	three_prime_UTR	24835787	24837405	.	-	.	Parent=Os05t0504800-01
Chr05	irgsp1_rep	mRNA	24895872	24898803	.	-	.	ID=Os05t0505075-01;Name=Os05t0505075-01;Locus_id=Os05g0505075;Note=Non-protein coding transcript.;Transcript_evidence=AK288283 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090018D02;TENOR=Os05t0505075-01
Chr05	irgsp1_rep	exon	24895872	24898803	.	-	.	Parent=Os05t0505075-01
Chr05	irgsp1_rep	mRNA	24913012	24914004	.	-	.	ID=Os05t0505383-01;Name=Os05t0505383-01;Locus_id=Os05g0505383;Note=Hypothetical gene.;Transcript_evidence=AK109720 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-146-A07;TENOR=Os05t0505383-01;KEGG=Os05t0505383-01
Chr05	irgsp1_rep	five_prime_UTR	24914004	24914004	.	-	.	Parent=Os05t0505383-01
Chr05	irgsp1_rep	CDS	24913503	24914003	.	-	0	Parent=Os05t0505383-01
Chr05	irgsp1_rep	three_prime_UTR	24913012	24913502	.	-	.	Parent=Os05t0505383-01
Chr05	irgsp1_rep	mRNA	24961645	24964469	.	-	.	ID=Os05t0505692-01;Name=Os05t0505692-01;Locus_id=Os05g0505692;Note=Conserved hypothetical protein.;Transcript_evidence=AK288806 (DDBJ%2C Best hit);ORF_evidence=Q6K3P6 (UniProt);NIAS_FLcDNA=J090071K16;TENOR=Os05t0505692-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	24964349	24964469	.	-	.	Parent=Os05t0505692-01
Chr05	irgsp1_rep	CDS	24964118	24964348	.	-	0	Parent=Os05t0505692-01
Chr05	irgsp1_rep	three_prime_UTR	24961645	24964117	.	-	.	Parent=Os05t0505692-01
Chr05	irgsp1_rep	mRNA	24987550	24989544	.	-	.	ID=Os05t0505900-01;Name=Os05t0505900-01;Locus_id=Os05g0505900;Oryzabase Gene Symbol Synonym(s)=OsCLE507%2C CLE507;Oryzabase Gene Name Synonym(s)=CLV3/ESR-related 507%2C CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 507;Note=Similar to CLE family OsCLE507 protein.;Transcript_evidence=AK105820 (DDBJ%2C Best hit);ORF_evidence=A8R3Q3 (UniProt);NIAS_FLcDNA=001-203-D05;Oryzabase=14244;Expression=AK105820;TENOR=Os05t0505900-01;KEGG=Os05t0505900-01
Chr05	irgsp1_rep	five_prime_UTR	24989144	24989544	.	-	.	Parent=Os05t0505900-01
Chr05	irgsp1_rep	CDS	24988857	24989143	.	-	0	Parent=Os05t0505900-01
Chr05	irgsp1_rep	CDS	24988068	24988110	.	-	1	Parent=Os05t0505900-01
Chr05	irgsp1_rep	three_prime_UTR	24987550	24988067	.	-	.	Parent=Os05t0505900-01
Chr05	irgsp1_rep	mRNA	24987033	24989291	.	-	.	ID=Os05t0505900-02;Name=Os05t0505900-02;Locus_id=Os05g0505900;Oryzabase Gene Symbol Synonym(s)=OsCLE507%2C CLE507;Oryzabase Gene Name Synonym(s)=CLV3/ESR-related 507%2C CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 507;Note=Similar to CLE family OsCLE507 protein.;Transcript_evidence=AK106936 (DDBJ%2C Best hit);ORF_evidence=A8R3Q3 (UniProt);NIAS_FLcDNA=002-119-C09;Oryzabase=14244;Expression=AK106936;TENOR=Os05t0505900-02;KEGG=Os05t0505900-02
Chr05	irgsp1_rep	five_prime_UTR	24989144	24989291	.	-	.	Parent=Os05t0505900-02
Chr05	irgsp1_rep	CDS	24988857	24989143	.	-	0	Parent=Os05t0505900-02
Chr05	irgsp1_rep	CDS	24988068	24988110	.	-	1	Parent=Os05t0505900-02
Chr05	irgsp1_rep	three_prime_UTR	24987033	24988067	.	-	.	Parent=Os05t0505900-02
Chr05	irgsp1_rep	mRNA	24997324	24999559	.	+	.	ID=Os05t0506000-01;Name=Os05t0506000-01;Locus_id=Os05g0506000;Oryzabase Gene Name Synonym(s)=MS5 homolog;Note=Similar to MS5-like protein (Fragment).;Transcript_evidence=AK122090 (DDBJ%2C Best hit),AK062012 (DDBJ%2C Best hit),AK098900 (DDBJ%2C Best hit);ORF_evidence=B4FYX3 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide TPR-1 (IPR001440),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J033123O20,001-043-E07,J013002B13;Oryzabase=13804;TENOR=Os05t0506000-01
Chr05	irgsp1_rep	five_prime_UTR	24997324	24997414	.	+	.	Parent=Os05t0506000-01
Chr05	irgsp1_rep	CDS	24997415	24997540	.	+	0	Parent=Os05t0506000-01
Chr05	irgsp1_rep	CDS	24998298	24998510	.	+	0	Parent=Os05t0506000-01
Chr05	irgsp1_rep	CDS	24998606	24998761	.	+	0	Parent=Os05t0506000-01
Chr05	irgsp1_rep	CDS	24998872	24999276	.	+	0	Parent=Os05t0506000-01
Chr05	irgsp1_rep	three_prime_UTR	24999277	24999559	.	+	.	Parent=Os05t0506000-01
Chr05	irgsp1_rep	mRNA	25007029	25012046	.	+	.	ID=Os05t0506200-01;Name=Os05t0506200-01;Locus_id=Os05g0506200;Note=KOW domain containing protein.;Transcript_evidence=AK064413 (DDBJ%2C Best hit);ORF_evidence=Q65X55 (UniProt);InterPro=KOW (IPR005824);NIAS_FLcDNA=002-110-A09;Expression=AK064413;TENOR=Os05t0506200-01;KEGG=Os05t0506200-01
Chr05	irgsp1_rep	CDS	25007029	25007106	.	+	0	Parent=Os05t0506200-01
Chr05	irgsp1_rep	CDS	25008525	25008680	.	+	0	Parent=Os05t0506200-01
Chr05	irgsp1_rep	CDS	25009023	25009074	.	+	0	Parent=Os05t0506200-01
Chr05	irgsp1_rep	CDS	25009148	25009306	.	+	2	Parent=Os05t0506200-01
Chr05	irgsp1_rep	CDS	25009376	25009412	.	+	2	Parent=Os05t0506200-01
Chr05	irgsp1_rep	CDS	25009536	25009570	.	+	1	Parent=Os05t0506200-01
Chr05	irgsp1_rep	CDS	25009667	25009718	.	+	2	Parent=Os05t0506200-01
Chr05	irgsp1_rep	CDS	25009932	25009981	.	+	1	Parent=Os05t0506200-01
Chr05	irgsp1_rep	CDS	25010908	25012046	.	+	2	Parent=Os05t0506200-01
Chr05	irgsp1_rep	mRNA	25013673	25014763	.	+	.	ID=Os05t0506300-01;Name=Os05t0506300-01;Locus_id=Os05g0506300;Note=Conserved hypothetical protein.;Transcript_evidence=AK061526 (DDBJ%2C Best hit);ORF_evidence=Q75IP0 (UniProt);NIAS_FLcDNA=006-310-D08;Expression=AK061526;TENOR=Os05t0506300-01;KEGG=Os05t0506300-01
Chr05	irgsp1_rep	five_prime_UTR	25013673	25013686	.	+	.	Parent=Os05t0506300-01
Chr05	irgsp1_rep	CDS	25013687	25014157	.	+	0	Parent=Os05t0506300-01
Chr05	irgsp1_rep	three_prime_UTR	25014158	25014763	.	+	.	Parent=Os05t0506300-01
Chr05	irgsp1_rep	mRNA	25013733	25014881	.	+	.	ID=Os05t0506300-02;Name=Os05t0506300-02;Locus_id=Os05g0506300;Note=Conserved hypothetical protein.;Transcript_evidence=AK061071 (DDBJ%2C Best hit);ORF_evidence=Q75IP0 (UniProt);NIAS_FLcDNA=006-206-C09;Expression=AK061071;TENOR=Os05t0506300-02;KEGG=Os05t0506300-02
Chr05	irgsp1_rep	five_prime_UTR	25013733	25013734	.	+	.	Parent=Os05t0506300-02
Chr05	irgsp1_rep	CDS	25013735	25014157	.	+	0	Parent=Os05t0506300-02
Chr05	irgsp1_rep	three_prime_UTR	25014158	25014881	.	+	.	Parent=Os05t0506300-02
Chr05	irgsp1_rep	mRNA	25022159	25022487	.	-	.	ID=Os05t0506450-00;Name=Os05t0506450-00;Locus_id=Os05g0506450;Note=Similar to esterase.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001149411.1 (RefSeq);TENOR=Os05t0506450-00
Chr05	irgsp1_rep	CDS	25022481	25022487	.	-	0	Parent=Os05t0506450-00
Chr05	irgsp1_rep	CDS	25022159	25022373	.	-	2	Parent=Os05t0506450-00
Chr05	irgsp1_rep	mRNA	25022958	25024013	.	-	.	ID=Os05t0506500-00;Name=Os05t0506500-00;Locus_id=Os05g0506500;CGSNL Gene Symbol=GELP69;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 69;Oryzabase Gene Symbol Synonym(s)=OsGELP69;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 69;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2Y6B5 (UniProt);Oryzabase=11019;TENOR=Os05t0506500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	25023773	25024013	.	-	0	Parent=Os05t0506500-00
Chr05	irgsp1_rep	CDS	25023437	25023676	.	-	2	Parent=Os05t0506500-00
Chr05	irgsp1_rep	CDS	25023199	25023347	.	-	2	Parent=Os05t0506500-00
Chr05	irgsp1_rep	CDS	25022958	25022987	.	-	0	Parent=Os05t0506500-00
Chr05	irgsp1_rep	mRNA	25025141	25027155	.	-	.	ID=Os05t0506600-00;Name=Os05t0506600-00;Locus_id=Os05g0506600;CGSNL Gene Symbol=GELP70;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 70;Oryzabase Gene Symbol Synonym(s)=OsGELP70;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 70;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001055986.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);Oryzabase=11020;TENOR=Os05t0506600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	25026996	25027155	.	-	0	Parent=Os05t0506600-00
Chr05	irgsp1_rep	CDS	25026579	25026803	.	-	2	Parent=Os05t0506600-00
Chr05	irgsp1_rep	CDS	25026314	25026537	.	-	2	Parent=Os05t0506600-00
Chr05	irgsp1_rep	CDS	25025902	25026175	.	-	0	Parent=Os05t0506600-00
Chr05	irgsp1_rep	CDS	25025141	25025370	.	-	2	Parent=Os05t0506600-00
Chr05	irgsp1_rep	mRNA	25035919	25038954	.	-	.	ID=Os05t0506800-01;Name=Os05t0506800-01;Locus_id=Os05g0506800;CGSNL Gene Symbol=GELP72;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 72;Oryzabase Gene Symbol Synonym(s)=OsGELP72;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 72;Note=Hypothetical conserved gene.;Transcript_evidence=AK241401 (DDBJ%2C Best hit);ORF_evidence=A2Y6B8 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=J065158N07;Oryzabase=11022;TENOR=Os05t0506800-01;KEGG=Os05t0506800-01
Chr05	irgsp1_rep	five_prime_UTR	25038906	25038954	.	-	.	Parent=Os05t0506800-01
Chr05	irgsp1_rep	CDS	25038665	25038905	.	-	0	Parent=Os05t0506800-01
Chr05	irgsp1_rep	CDS	25038131	25038358	.	-	2	Parent=Os05t0506800-01
Chr05	irgsp1_rep	CDS	25037632	25037780	.	-	2	Parent=Os05t0506800-01
Chr05	irgsp1_rep	CDS	25037156	25037429	.	-	0	Parent=Os05t0506800-01
Chr05	irgsp1_rep	CDS	25036214	25036449	.	-	2	Parent=Os05t0506800-01
Chr05	irgsp1_rep	three_prime_UTR	25035919	25036213	.	-	.	Parent=Os05t0506800-01
Chr05	irgsp1_rep	mRNA	25041531	25043493	.	-	.	ID=Os05t0506900-01;Name=Os05t0506900-01;Locus_id=Os05g0506900;Note=Similar to Brix domain-containing protein 1.;Transcript_evidence=AK106697 (DDBJ%2C Best hit);ORF_evidence=NP_001167679.1 (RefSeq);InterPro=Brix domain (IPR007109);NIAS_FLcDNA=002-114-D09;Expression=AK106697;TENOR=Os05t0506900-01;KEGG=Os05t0506900-01
Chr05	irgsp1_rep	five_prime_UTR	25043412	25043493	.	-	.	Parent=Os05t0506900-01
Chr05	irgsp1_rep	CDS	25043343	25043411	.	-	0	Parent=Os05t0506900-01
Chr05	irgsp1_rep	CDS	25042997	25043263	.	-	0	Parent=Os05t0506900-01
Chr05	irgsp1_rep	three_prime_UTR	25042212	25042996	.	-	.	Parent=Os05t0506900-01
Chr05	irgsp1_rep	three_prime_UTR	25041968	25042033	.	-	.	Parent=Os05t0506900-01
Chr05	irgsp1_rep	three_prime_UTR	25041531	25041878	.	-	.	Parent=Os05t0506900-01
Chr05	irgsp1_rep	mRNA	25041786	25043275	.	+	.	ID=Os05t0506950-00;Name=Os05t0506950-00;Locus_id=Os05g0506950;Note=Non-protein coding transcript.;Transcript_evidence=tplb0026e12 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os05t0506950-00
Chr05	irgsp1_rep	exon	25041786	25041854	.	+	.	Parent=Os05t0506950-00
Chr05	irgsp1_rep	exon	25041946	25042019	.	+	.	Parent=Os05t0506950-00
Chr05	irgsp1_rep	exon	25042195	25042467	.	+	.	Parent=Os05t0506950-00
Chr05	irgsp1_rep	exon	25042550	25042768	.	+	.	Parent=Os05t0506950-00
Chr05	irgsp1_rep	exon	25043044	25043275	.	+	.	Parent=Os05t0506950-00
Chr05	irgsp1_rep	mRNA	25044642	25045473	.	+	.	ID=Os05t0507000-01;Name=Os05t0507000-01;Locus_id=Os05g0507000;Note=Similar to JHL23J11.5 protein.;Transcript_evidence=AK108025 (DDBJ%2C Best hit);ORF_evidence=E6NU40 (UniProt);NIAS_FLcDNA=002-136-A07;Expression=AK108025;TENOR=Os05t0507000-01;KEGG=Os05t0507000-01
Chr05	irgsp1_rep	five_prime_UTR	25044642	25044730	.	+	.	Parent=Os05t0507000-01
Chr05	irgsp1_rep	CDS	25044731	25045231	.	+	0	Parent=Os05t0507000-01
Chr05	irgsp1_rep	three_prime_UTR	25045232	25045473	.	+	.	Parent=Os05t0507000-01
Chr05	irgsp1_rep	mRNA	25055345	25059031	.	+	.	ID=Os05t0507300-01;Name=Os05t0507300-01;Locus_id=Os05g0507300;Note=Similar to Calreticulin-3.;Transcript_evidence=AK060834 (DDBJ%2C Best hit);ORF_evidence=B6TA28 (UniProt);GO=Biological Process: protein folding (GO:0006457),Cellular Component: endoplasmic reticulum (GO:0005783),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Calreticulin/calnexin (IPR001580),Concanavalin A-like lectin/glucanase (IPR008985),Calreticulin/calnexin%2C P (IPR009033),Calreticulin (IPR009169),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Calreticulin/calnexin%2C conserved site (IPR018124);NIAS_FLcDNA=001-034-C08;TENOR=Os05t0507300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	25055345	25055346	.	+	.	Parent=Os05t0507300-01
Chr05	irgsp1_rep	CDS	25055347	25055383	.	+	0	Parent=Os05t0507300-01
Chr05	irgsp1_rep	CDS	25055558	25055750	.	+	2	Parent=Os05t0507300-01
Chr05	irgsp1_rep	CDS	25056210	25056468	.	+	1	Parent=Os05t0507300-01
Chr05	irgsp1_rep	CDS	25056554	25056610	.	+	0	Parent=Os05t0507300-01
Chr05	irgsp1_rep	CDS	25056688	25056735	.	+	0	Parent=Os05t0507300-01
Chr05	irgsp1_rep	CDS	25057043	25057129	.	+	0	Parent=Os05t0507300-01
Chr05	irgsp1_rep	CDS	25057203	25057260	.	+	0	Parent=Os05t0507300-01
Chr05	irgsp1_rep	CDS	25057402	25057469	.	+	2	Parent=Os05t0507300-01
Chr05	irgsp1_rep	CDS	25057597	25057692	.	+	0	Parent=Os05t0507300-01
Chr05	irgsp1_rep	CDS	25057801	25057857	.	+	0	Parent=Os05t0507300-01
Chr05	irgsp1_rep	CDS	25057979	25058068	.	+	0	Parent=Os05t0507300-01
Chr05	irgsp1_rep	CDS	25058502	25058528	.	+	0	Parent=Os05t0507300-01
Chr05	irgsp1_rep	CDS	25058630	25058641	.	+	0	Parent=Os05t0507300-01
Chr05	irgsp1_rep	three_prime_UTR	25058642	25059031	.	+	.	Parent=Os05t0507300-01
Chr05	irgsp1_rep	mRNA	25063389	25064011	.	+	.	ID=Os05t0507400-01;Name=Os05t0507400-01;Locus_id=Os05g0507400;Note=Conserved hypothetical protein.;Transcript_evidence=AK107717 (DDBJ%2C Best hit);ORF_evidence=Q75IN5 (UniProt);NIAS_FLcDNA=002-132-E05;Expression=AK107717;TENOR=Os05t0507400-01;KEGG=Os05t0507400-01
Chr05	irgsp1_rep	five_prime_UTR	25063389	25063567	.	+	.	Parent=Os05t0507400-01
Chr05	irgsp1_rep	CDS	25063568	25063903	.	+	0	Parent=Os05t0507400-01
Chr05	irgsp1_rep	three_prime_UTR	25063904	25064011	.	+	.	Parent=Os05t0507400-01
Chr05	irgsp1_rep	mRNA	25153902	25157647	.	+	.	ID=Os05t0508300-01;Name=Os05t0508300-01;Locus_id=Os05g0508300;Note=Similar to Papain-like cysteine peptidase XBCP3.;Transcript_evidence=AK241017 (DDBJ%2C Best hit);ORF_evidence=B4ESF0 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Granulin (IPR000118),Peptidase%2C cysteine peptidase active site (IPR000169),Peptidase C1A%2C papain C-terminal (IPR000668),Peptidase C1A%2C papain (IPR013128),Proteinase inhibitor I29%2C cathepsin propeptide (IPR013201);NIAS_FLcDNA=J065054E09;TENOR=Os05t0508300-01;KEGG=Os05t0508300-01
Chr05	irgsp1_rep	five_prime_UTR	25153902	25154229	.	+	.	Parent=Os05t0508300-01
Chr05	irgsp1_rep	CDS	25154230	25154671	.	+	0	Parent=Os05t0508300-01
Chr05	irgsp1_rep	CDS	25155934	25156169	.	+	2	Parent=Os05t0508300-01
Chr05	irgsp1_rep	CDS	25156257	25156397	.	+	0	Parent=Os05t0508300-01
Chr05	irgsp1_rep	CDS	25156500	25156931	.	+	0	Parent=Os05t0508300-01
Chr05	irgsp1_rep	CDS	25157159	25157260	.	+	0	Parent=Os05t0508300-01
Chr05	irgsp1_rep	three_prime_UTR	25157261	25157288	.	+	.	Parent=Os05t0508300-01
Chr05	irgsp1_rep	three_prime_UTR	25157373	25157647	.	+	.	Parent=Os05t0508300-01
Chr05	irgsp1_rep	mRNA	25159955	25163398	.	+	.	ID=Os05t0508400-01;Name=Os05t0508400-01;Locus_id=Os05g0508400;Note=Mannose-binding lectin domain containing protein.;Transcript_evidence=AK073221 (DDBJ%2C Best hit);ORF_evidence=B9FKI4 (UniProt);InterPro=Mannose-binding lectin (IPR001229);NIAS_FLcDNA=J033005A04;Expression=AK073221;TENOR=Os05t0508400-01;KEGG=Os05t0508400-01
Chr05	irgsp1_rep	five_prime_UTR	25159955	25160054	.	+	.	Parent=Os05t0508400-01
Chr05	irgsp1_rep	CDS	25160055	25160057	.	+	0	Parent=Os05t0508400-01
Chr05	irgsp1_rep	CDS	25160562	25160780	.	+	0	Parent=Os05t0508400-01
Chr05	irgsp1_rep	CDS	25161270	25162004	.	+	0	Parent=Os05t0508400-01
Chr05	irgsp1_rep	CDS	25162092	25162436	.	+	0	Parent=Os05t0508400-01
Chr05	irgsp1_rep	CDS	25162508	25162723	.	+	0	Parent=Os05t0508400-01
Chr05	irgsp1_rep	CDS	25162863	25163159	.	+	0	Parent=Os05t0508400-01
Chr05	irgsp1_rep	three_prime_UTR	25163160	25163398	.	+	.	Parent=Os05t0508400-01
Chr05	irgsp1_rep	mRNA	25164335	25169293	.	+	.	ID=Os05t0508500-01;Name=Os05t0508500-01;Locus_id=Os05g0508500;CGSNL Gene Symbol=TRXH2;CGSNL Gene Name=THIOREDOXIN H-TYPE 2;Oryzabase Gene Symbol Synonym(s)=OsTRXh2%2C Os2%2C OsTrxh2;Oryzabase Gene Name Synonym(s)=Thioredoxin H-type 2%2C H-type Thioredoxin 2%2C thioredoxin h2;Note=Protein of unknown function DUF594 domain containing protein.;Transcript_evidence=AK106758 (DDBJ%2C Best hit);ORF_evidence=B9FL17 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);NIAS_FLcDNA=002-115-D09;Oryzabase=9905;TENOR=Os05t0508500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	25164335	25164587	.	+	.	Parent=Os05t0508500-01
Chr05	irgsp1_rep	five_prime_UTR	25165696	25165818	.	+	.	Parent=Os05t0508500-01
Chr05	irgsp1_rep	five_prime_UTR	25165929	25167032	.	+	.	Parent=Os05t0508500-01
Chr05	irgsp1_rep	CDS	25167033	25169168	.	+	0	Parent=Os05t0508500-01
Chr05	irgsp1_rep	three_prime_UTR	25169169	25169293	.	+	.	Parent=Os05t0508500-01
Chr05	irgsp1_rep	mRNA	25164366	25166265	.	+	.	ID=Os05t0508500-02;Name=Os05t0508500-02;Locus_id=Os05g0508500;RAP-DB Gene Symbol Synonym(s)=OsTrxh2;CGSNL Gene Symbol=TRXH2;CGSNL Gene Name=THIOREDOXIN H-TYPE 2;Oryzabase Gene Symbol Synonym(s)=OsTRXh2%2C Os2%2C OsTrxh2;Oryzabase Gene Name Synonym(s)=Thioredoxin H-type 2%2C H-type Thioredoxin 2%2C thioredoxin h2;Note=Thioredoxin protein%2C Bacterial F-box effector (XopI)-interacting protein%2C Regulation of rice immunity;Transcript_evidence=AK059385;ORF_evidence=Q6L4X5;GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Thioredoxin-like superfamily (IPR036249),Thioredoxin (IPR005746),Thioredoxin domain (IPR013766),Thioredoxin%2C conserved site (IPR017937);NIAS_FLcDNA=001-026-G10;Manual Curation=September 7%2C 2020;Literature_PMID=32881160;Oryzabase=9905;Expression=AK059385;TENOR=Os05t0508500-02
Chr05	irgsp1_rep	five_prime_UTR	25164366	25164479	.	+	.	Parent=Os05t0508500-02
Chr05	irgsp1_rep	CDS	25164480	25164587	.	+	0	Parent=Os05t0508500-02
Chr05	irgsp1_rep	CDS	25165696	25165818	.	+	0	Parent=Os05t0508500-02
Chr05	irgsp1_rep	CDS	25165929	25166063	.	+	0	Parent=Os05t0508500-02
Chr05	irgsp1_rep	three_prime_UTR	25166064	25166265	.	+	.	Parent=Os05t0508500-02
Chr05	irgsp1_rep	mRNA	25176651	25185037	.	+	.	ID=Os05t0508700-01;Name=Os05t0508700-01;Locus_id=Os05g0508700;Oryzabase Gene Symbol Synonym(s)=OsM4%2C M4%2C OsM4a;Oryzabase Gene Name Synonym(s)=single domain MDC protein 4%2C single MATH domain containing protein 4;Note=TRAF-type domain containing protein.;Transcript_evidence=AK101520 (DDBJ%2C Best hit);ORF_evidence=B9FKI6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=MATH (IPR002083),TRAF-like (IPR008974),TRAF-type (IPR013322);NIAS_FLcDNA=J033046K22;Oryzabase=21185;Expression=AK101520;TENOR=Os05t0508700-01;KEGG=Os05t0508700-01
Chr05	irgsp1_rep	five_prime_UTR	25176651	25176807	.	+	.	Parent=Os05t0508700-01
Chr05	irgsp1_rep	five_prime_UTR	25177262	25177301	.	+	.	Parent=Os05t0508700-01
Chr05	irgsp1_rep	CDS	25177302	25177479	.	+	0	Parent=Os05t0508700-01
Chr05	irgsp1_rep	CDS	25179075	25179186	.	+	2	Parent=Os05t0508700-01
Chr05	irgsp1_rep	CDS	25179946	25180034	.	+	1	Parent=Os05t0508700-01
Chr05	irgsp1_rep	CDS	25180113	25180181	.	+	2	Parent=Os05t0508700-01
Chr05	irgsp1_rep	CDS	25180265	25180394	.	+	2	Parent=Os05t0508700-01
Chr05	irgsp1_rep	CDS	25180818	25180976	.	+	1	Parent=Os05t0508700-01
Chr05	irgsp1_rep	CDS	25181079	25181439	.	+	1	Parent=Os05t0508700-01
Chr05	irgsp1_rep	CDS	25181655	25181764	.	+	0	Parent=Os05t0508700-01
Chr05	irgsp1_rep	CDS	25182065	25182221	.	+	1	Parent=Os05t0508700-01
Chr05	irgsp1_rep	CDS	25183648	25184060	.	+	0	Parent=Os05t0508700-01
Chr05	irgsp1_rep	CDS	25184140	25184332	.	+	1	Parent=Os05t0508700-01
Chr05	irgsp1_rep	CDS	25184696	25185037	.	+	0	Parent=Os05t0508700-01
Chr05	irgsp1_rep	mRNA	25181080	25182208	.	+	.	ID=Os05t0508700-02;Name=Os05t0508700-02;Locus_id=Os05g0508700;Oryzabase Gene Symbol Synonym(s)=OsM4%2C M4%2C OsM4a;Oryzabase Gene Name Synonym(s)=single domain MDC protein 4%2C single MATH domain containing protein 4;Note=Similar to Math domain containing protein (Fragment).;Transcript_evidence=AK063235 (DDBJ%2C Best hit);ORF_evidence=A6MZB0 (UniProt);NIAS_FLcDNA=001-112-F09;Oryzabase=21185;TENOR=Os05t0508700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	25181080	25181124	.	+	.	Parent=Os05t0508700-02
Chr05	irgsp1_rep	CDS	25181125	25181439	.	+	0	Parent=Os05t0508700-02
Chr05	irgsp1_rep	CDS	25181655	25181764	.	+	0	Parent=Os05t0508700-02
Chr05	irgsp1_rep	CDS	25182065	25182208	.	+	1	Parent=Os05t0508700-02
Chr05	irgsp1_rep	mRNA	25181357	25186706	.	+	.	ID=Os05t0508700-03;Name=Os05t0508700-03;Locus_id=Os05g0508700;Oryzabase Gene Symbol Synonym(s)=OsM4%2C M4%2C OsM4a;Oryzabase Gene Name Synonym(s)=single domain MDC protein 4%2C single MATH domain containing protein 4;Note=Hypothetical conserved gene.;Transcript_evidence=AK105718 (DDBJ%2C Best hit);ORF_evidence=Q6L4X3 (UniProt);NIAS_FLcDNA=001-201-F09;Oryzabase=21185;Expression=AK105718;TENOR=Os05t0508700-03;KEGG=Os05t0508700-03
Chr05	irgsp1_rep	five_prime_UTR	25181357	25181433	.	+	.	Parent=Os05t0508700-03
Chr05	irgsp1_rep	CDS	25181434	25181439	.	+	0	Parent=Os05t0508700-03
Chr05	irgsp1_rep	CDS	25181655	25181764	.	+	0	Parent=Os05t0508700-03
Chr05	irgsp1_rep	CDS	25182065	25182221	.	+	1	Parent=Os05t0508700-03
Chr05	irgsp1_rep	CDS	25183648	25184053	.	+	0	Parent=Os05t0508700-03
Chr05	irgsp1_rep	CDS	25184985	25186510	.	+	2	Parent=Os05t0508700-03
Chr05	irgsp1_rep	three_prime_UTR	25186511	25186706	.	+	.	Parent=Os05t0508700-03
Chr05	irgsp1_rep	mRNA	25177260	25185189	.	-	.	ID=Os05t0508750-00;Name=Os05t0508750-00;Locus_id=Os05g0508750;Note=Hypothetical protein.;Transcript_evidence=tplb0049h11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0508750-00
Chr05	irgsp1_rep	five_prime_UTR	25184694	25185189	.	-	.	Parent=Os05t0508750-00
Chr05	irgsp1_rep	five_prime_UTR	25184138	25184330	.	-	.	Parent=Os05t0508750-00
Chr05	irgsp1_rep	five_prime_UTR	25183931	25184058	.	-	.	Parent=Os05t0508750-00
Chr05	irgsp1_rep	five_prime_UTR	25183655	25183858	.	-	.	Parent=Os05t0508750-00
Chr05	irgsp1_rep	five_prime_UTR	25182046	25182229	.	-	.	Parent=Os05t0508750-00
Chr05	irgsp1_rep	five_prime_UTR	25181653	25181751	.	-	.	Parent=Os05t0508750-00
Chr05	irgsp1_rep	five_prime_UTR	25181328	25181437	.	-	.	Parent=Os05t0508750-00
Chr05	irgsp1_rep	CDS	25181076	25181327	.	-	0	Parent=Os05t0508750-00
Chr05	irgsp1_rep	CDS	25180881	25180973	.	-	0	Parent=Os05t0508750-00
Chr05	irgsp1_rep	three_prime_UTR	25180831	25180880	.	-	.	Parent=Os05t0508750-00
Chr05	irgsp1_rep	three_prime_UTR	25180263	25180403	.	-	.	Parent=Os05t0508750-00
Chr05	irgsp1_rep	three_prime_UTR	25180105	25180179	.	-	.	Parent=Os05t0508750-00
Chr05	irgsp1_rep	three_prime_UTR	25179945	25180027	.	-	.	Parent=Os05t0508750-00
Chr05	irgsp1_rep	three_prime_UTR	25179067	25179185	.	-	.	Parent=Os05t0508750-00
Chr05	irgsp1_rep	three_prime_UTR	25177260	25177476	.	-	.	Parent=Os05t0508750-00
Chr05	irgsp1_rep	mRNA	25188258	25193047	.	+	.	ID=Os05t0508800-01;Name=Os05t0508800-01;Locus_id=Os05g0508800;Note=Similar to H1flk (Fragment).;Transcript_evidence=AK065638 (DDBJ%2C Best hit);ORF_evidence=Q7DM36 (UniProt);GO=Molecular Function: ATP binding (GO:0005524),Molecular Function: kinase activity (GO:0016301);InterPro=Zeta toxin domain (IPR010488);NIAS_FLcDNA=J013031O22;Expression=AK065638;TENOR=Os05t0508800-01;KEGG=Os05t0508800-01
Chr05	irgsp1_rep	five_prime_UTR	25188258	25188674	.	+	.	Parent=Os05t0508800-01
Chr05	irgsp1_rep	CDS	25188675	25188765	.	+	0	Parent=Os05t0508800-01
Chr05	irgsp1_rep	CDS	25189414	25189637	.	+	2	Parent=Os05t0508800-01
Chr05	irgsp1_rep	CDS	25189745	25189806	.	+	0	Parent=Os05t0508800-01
Chr05	irgsp1_rep	CDS	25190531	25190752	.	+	1	Parent=Os05t0508800-01
Chr05	irgsp1_rep	CDS	25191052	25191181	.	+	1	Parent=Os05t0508800-01
Chr05	irgsp1_rep	CDS	25191685	25192010	.	+	0	Parent=Os05t0508800-01
Chr05	irgsp1_rep	CDS	25192222	25192363	.	+	1	Parent=Os05t0508800-01
Chr05	irgsp1_rep	CDS	25192481	25192726	.	+	0	Parent=Os05t0508800-01
Chr05	irgsp1_rep	three_prime_UTR	25192727	25193047	.	+	.	Parent=Os05t0508800-01
Chr05	irgsp1_rep	mRNA	25193479	25194625	.	+	.	ID=Os05t0508900-01;Name=Os05t0508900-01;Locus_id=Os05g0508900;Note=Similar to cDNA clone:001-011-D03%2C full insert sequence.;Transcript_evidence=AK066345 (DDBJ%2C Best hit);ORF_evidence=B7E500 (UniProt);NIAS_FLcDNA=J013064H24;Expression=AK066345;TENOR=Os05t0508900-01;KEGG=Os05t0508900-01
Chr05	irgsp1_rep	five_prime_UTR	25193479	25193561	.	+	.	Parent=Os05t0508900-01
Chr05	irgsp1_rep	CDS	25193562	25193619	.	+	0	Parent=Os05t0508900-01
Chr05	irgsp1_rep	CDS	25193962	25194124	.	+	2	Parent=Os05t0508900-01
Chr05	irgsp1_rep	CDS	25194190	25194343	.	+	1	Parent=Os05t0508900-01
Chr05	irgsp1_rep	three_prime_UTR	25194344	25194625	.	+	.	Parent=Os05t0508900-01
Chr05	irgsp1_rep	mRNA	25196457	25196765	.	+	.	ID=Os05t0509050-00;Name=Os05t0509050-00;Locus_id=Os05g0509050;Note=Non-protein coding transcript.;Transcript_evidence=CT836448 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os05t0509050-00
Chr05	irgsp1_rep	exon	25196457	25196765	.	+	.	Parent=Os05t0509050-00
Chr05	irgsp1_rep	mRNA	25199743	25201591	.	-	.	ID=Os05t0509101-00;Name=Os05t0509101-00;Locus_id=Os05g0509101;Note=Conserved hypothetical protein.;Transcript_evidence=AK110690 (DDBJ%2C Secondary hit);ORF_evidence=Q6L4X0 (UniProt);TENOR=Os05t0509101-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	25201187	25201591	.	-	.	Parent=Os05t0509101-00
Chr05	irgsp1_rep	CDS	25200955	25201186	.	-	0	Parent=Os05t0509101-00
Chr05	irgsp1_rep	CDS	25200648	25200781	.	-	2	Parent=Os05t0509101-00
Chr05	irgsp1_rep	three_prime_UTR	25200626	25200647	.	-	.	Parent=Os05t0509101-00
Chr05	irgsp1_rep	three_prime_UTR	25199743	25199958	.	-	.	Parent=Os05t0509101-00
Chr05	irgsp1_rep	mRNA	25214532	25217859	.	+	.	ID=Os05t0509200-01;Name=Os05t0509200-01;Locus_id=Os05g0509200;Note=Thioredoxin fold domain containing protein.;Transcript_evidence=AK061566 (DDBJ%2C Best hit),AK099007 (DDBJ%2C Best hit),AK100226 (DDBJ%2C Best hit);ORF_evidence=B6TN15 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: NAD binding (GO:0051287);InterPro=NADH:ubiquinone oxidoreductase%2C 24kDa subunit (IPR002023),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=006-311-E10,J013114B12,J023048E09;TENOR=Os05t0509200-01
Chr05	irgsp1_rep	five_prime_UTR	25214532	25214585	.	+	.	Parent=Os05t0509200-01
Chr05	irgsp1_rep	CDS	25214586	25214687	.	+	0	Parent=Os05t0509200-01
Chr05	irgsp1_rep	CDS	25214796	25214852	.	+	0	Parent=Os05t0509200-01
Chr05	irgsp1_rep	CDS	25214967	25215032	.	+	0	Parent=Os05t0509200-01
Chr05	irgsp1_rep	CDS	25215429	25215545	.	+	0	Parent=Os05t0509200-01
Chr05	irgsp1_rep	CDS	25216069	25216146	.	+	0	Parent=Os05t0509200-01
Chr05	irgsp1_rep	CDS	25216223	25216328	.	+	0	Parent=Os05t0509200-01
Chr05	irgsp1_rep	CDS	25216462	25216508	.	+	2	Parent=Os05t0509200-01
Chr05	irgsp1_rep	CDS	25216698	25216775	.	+	0	Parent=Os05t0509200-01
Chr05	irgsp1_rep	CDS	25217210	25217275	.	+	0	Parent=Os05t0509200-01
Chr05	irgsp1_rep	CDS	25217414	25217521	.	+	0	Parent=Os05t0509200-01
Chr05	irgsp1_rep	three_prime_UTR	25217522	25217859	.	+	.	Parent=Os05t0509200-01
Chr05	irgsp1_rep	mRNA	25218662	25224474	.	+	.	ID=Os05t0509300-01;Name=Os05t0509300-01;Locus_id=Os05g0509300;Note=Pseudouridine synthase%2C TruD domain containing protein.;Transcript_evidence=AK066384 (DDBJ%2C Best hit);ORF_evidence=F2D4P6 (UniProt);GO=Biological Process: pseudouridine synthesis (GO:0001522),Biological Process: RNA modification (GO:0009451),Molecular Function: RNA binding (GO:0003723),Molecular Function: pseudouridine synthase activity (GO:0009982);InterPro=Pseudouridine synthase%2C TruD (IPR001656),Pseudouridine synthase%2C TruD%2C insertion domain (IPR011760),Pseudouridine synthase%2C catalytic domain (IPR020103),Pseudouridine synthase TruD%2C conserved site (IPR020119);NIAS_FLcDNA=J013065A19;TENOR=Os05t0509300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	25218662	25218737	.	+	.	Parent=Os05t0509300-01
Chr05	irgsp1_rep	CDS	25218738	25218908	.	+	0	Parent=Os05t0509300-01
Chr05	irgsp1_rep	CDS	25219004	25219204	.	+	0	Parent=Os05t0509300-01
Chr05	irgsp1_rep	CDS	25219295	25219548	.	+	0	Parent=Os05t0509300-01
Chr05	irgsp1_rep	CDS	25219780	25219852	.	+	1	Parent=Os05t0509300-01
Chr05	irgsp1_rep	CDS	25219971	25220027	.	+	0	Parent=Os05t0509300-01
Chr05	irgsp1_rep	CDS	25220531	25220610	.	+	0	Parent=Os05t0509300-01
Chr05	irgsp1_rep	CDS	25220698	25220760	.	+	1	Parent=Os05t0509300-01
Chr05	irgsp1_rep	CDS	25220990	25221077	.	+	1	Parent=Os05t0509300-01
Chr05	irgsp1_rep	CDS	25221171	25221374	.	+	0	Parent=Os05t0509300-01
Chr05	irgsp1_rep	three_prime_UTR	25221375	25221468	.	+	.	Parent=Os05t0509300-01
Chr05	irgsp1_rep	three_prime_UTR	25221608	25221681	.	+	.	Parent=Os05t0509300-01
Chr05	irgsp1_rep	three_prime_UTR	25222002	25222066	.	+	.	Parent=Os05t0509300-01
Chr05	irgsp1_rep	three_prime_UTR	25222245	25222408	.	+	.	Parent=Os05t0509300-01
Chr05	irgsp1_rep	three_prime_UTR	25222491	25222558	.	+	.	Parent=Os05t0509300-01
Chr05	irgsp1_rep	three_prime_UTR	25222649	25222709	.	+	.	Parent=Os05t0509300-01
Chr05	irgsp1_rep	three_prime_UTR	25223041	25223353	.	+	.	Parent=Os05t0509300-01
Chr05	irgsp1_rep	three_prime_UTR	25223466	25223787	.	+	.	Parent=Os05t0509300-01
Chr05	irgsp1_rep	three_prime_UTR	25224059	25224171	.	+	.	Parent=Os05t0509300-01
Chr05	irgsp1_rep	three_prime_UTR	25224271	25224474	.	+	.	Parent=Os05t0509300-01
Chr05	irgsp1_rep	mRNA	25224888	25227403	.	-	.	ID=Os05t0509400-01;Name=Os05t0509400-01;Locus_id=Os05g0509400;Oryzabase Gene Symbol Synonym(s)=OsCPP5%2C CPP5;Note=Similar to DNA binding protein-like.;Transcript_evidence=AK108053 (DDBJ%2C Best hit);ORF_evidence=NP_001150787.1 (RefSeq);InterPro=Tesmin/TSO1-like%2C CXC (IPR005172);NIAS_FLcDNA=002-137-H05;Oryzabase=21540;Expression=AK108053;TENOR=Os05t0509400-01;KEGG=Os05t0509400-01
Chr05	irgsp1_rep	five_prime_UTR	25227350	25227403	.	-	.	Parent=Os05t0509400-01
Chr05	irgsp1_rep	CDS	25227132	25227349	.	-	0	Parent=Os05t0509400-01
Chr05	irgsp1_rep	CDS	25226928	25227002	.	-	1	Parent=Os05t0509400-01
Chr05	irgsp1_rep	CDS	25226064	25226241	.	-	1	Parent=Os05t0509400-01
Chr05	irgsp1_rep	CDS	25225879	25225974	.	-	0	Parent=Os05t0509400-01
Chr05	irgsp1_rep	CDS	25225744	25225807	.	-	0	Parent=Os05t0509400-01
Chr05	irgsp1_rep	CDS	25225119	25225612	.	-	2	Parent=Os05t0509400-01
Chr05	irgsp1_rep	three_prime_UTR	25224888	25225118	.	-	.	Parent=Os05t0509400-01
Chr05	irgsp1_rep	mRNA	25229702	25233200	.	-	.	ID=Os05t0509500-01;Name=Os05t0509500-01;Locus_id=Os05g0509500;Note=Similar to Signal recognition particle 54 kDa protein 2 (SRP54).;Transcript_evidence=AK068958 (DDBJ%2C Best hit);ORF_evidence=P49969 (UniProt);GO=Biological Process: SRP-dependent cotranslational protein targeting to membrane (GO:0006614),Cellular Component: signal recognition particle (GO:0048500),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: GTP binding (GO:0005525),Molecular Function: 7S RNA binding (GO:0008312),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=Signal recognition particle%2C SRP54 subunit%2C GTPase (IPR000897),ATPase%2C AAA+ type%2C core (IPR003593),Signal recognition particle%2C SRP54 subunit%2C M-domain (IPR004125),Signal recognition particle%2C SRP54 subunit (IPR006325),Signal recognition particle%2C SRP54 subunit%2C helical bundle (IPR013822);NIAS_FLcDNA=J023001K24;Expression=AK068958;TENOR=Os05t0509500-01;KEGG=Os05t0509500-01
Chr05	irgsp1_rep	five_prime_UTR	25232989	25233200	.	-	.	Parent=Os05t0509500-01
Chr05	irgsp1_rep	CDS	25232758	25232988	.	-	0	Parent=Os05t0509500-01
Chr05	irgsp1_rep	CDS	25232534	25232633	.	-	0	Parent=Os05t0509500-01
Chr05	irgsp1_rep	CDS	25231641	25231794	.	-	2	Parent=Os05t0509500-01
Chr05	irgsp1_rep	CDS	25231401	25231551	.	-	1	Parent=Os05t0509500-01
Chr05	irgsp1_rep	CDS	25231158	25231306	.	-	0	Parent=Os05t0509500-01
Chr05	irgsp1_rep	CDS	25230894	25230994	.	-	1	Parent=Os05t0509500-01
Chr05	irgsp1_rep	CDS	25230659	25230816	.	-	2	Parent=Os05t0509500-01
Chr05	irgsp1_rep	CDS	25230409	25230523	.	-	0	Parent=Os05t0509500-01
Chr05	irgsp1_rep	CDS	25230037	25230329	.	-	2	Parent=Os05t0509500-01
Chr05	irgsp1_rep	three_prime_UTR	25229702	25230036	.	-	.	Parent=Os05t0509500-01
Chr05	irgsp1_rep	mRNA	25254990	25259747	.	-	.	ID=Os05t0509700-01;Name=Os05t0509700-01;Locus_id=Os05g0509700;Oryzabase Gene Symbol Synonym(s)=SSB;Note=Nucleic acid-binding%2C OB-fold domain containing protein.;Transcript_evidence=AK073396 (DDBJ%2C Best hit);ORF_evidence=NP_192844.2 (RefSeq);GO=Biological Process: DNA replication (GO:0006260),Molecular Function: single-stranded DNA binding (GO:0003697);InterPro=Primosome PriB/single-strand DNA-binding (IPR000424),Single-strand DNA-binding (IPR011344),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=J033045F21;Oryzabase=21312;Expression=AK073396;TENOR=Os05t0509700-01;KEGG=Os05t0509700-01
Chr05	irgsp1_rep	five_prime_UTR	25259513	25259747	.	-	.	Parent=Os05t0509700-01
Chr05	irgsp1_rep	five_prime_UTR	25258724	25258730	.	-	.	Parent=Os05t0509700-01
Chr05	irgsp1_rep	CDS	25258654	25258723	.	-	0	Parent=Os05t0509700-01
Chr05	irgsp1_rep	CDS	25258409	25258572	.	-	2	Parent=Os05t0509700-01
Chr05	irgsp1_rep	CDS	25258115	25258323	.	-	0	Parent=Os05t0509700-01
Chr05	irgsp1_rep	CDS	25257877	25257977	.	-	1	Parent=Os05t0509700-01
Chr05	irgsp1_rep	CDS	25257562	25257621	.	-	2	Parent=Os05t0509700-01
Chr05	irgsp1_rep	CDS	25257379	25257395	.	-	2	Parent=Os05t0509700-01
Chr05	irgsp1_rep	three_prime_UTR	25257341	25257378	.	-	.	Parent=Os05t0509700-01
Chr05	irgsp1_rep	three_prime_UTR	25254990	25255192	.	-	.	Parent=Os05t0509700-01
Chr05	irgsp1_rep	mRNA	25255960	25257031	.	+	.	ID=Os05t0509800-00;Name=Os05t0509800-00;Locus_id=Os05g0509800;Note=Protein of unknown function DUF1677%2C plant domain containing protein.;Transcript_evidence=CT836351 (DDBJ%2C Best hit);ORF_evidence=B8AZT3 (UniProt);InterPro=Protein of unknown function DUF1677%2C plant (IPR012876);TENOR=Os05t0509800-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	25255960	25256031	.	+	.	Parent=Os05t0509800-00
Chr05	irgsp1_rep	CDS	25256032	25256394	.	+	0	Parent=Os05t0509800-00
Chr05	irgsp1_rep	three_prime_UTR	25256395	25256451	.	+	.	Parent=Os05t0509800-00
Chr05	irgsp1_rep	three_prime_UTR	25256635	25257031	.	+	.	Parent=Os05t0509800-00
Chr05	irgsp1_rep	mRNA	25260687	25263722	.	-	.	ID=Os05t0509900-01;Name=Os05t0509900-01;Locus_id=Os05g0509900;Oryzabase Gene Symbol Synonym(s)=OsTFIIF2-1%2C OsRAP30-1;Oryzabase Gene Name Synonym(s)=OsTFIIF2-1 of Pol II%2C OsTFIIF2-1 of RNA polymerase II;Note=Winged helix repressor DNA-binding domain containing protein.;Transcript_evidence=AK072992 (DDBJ%2C Best hit);ORF_evidence=B6TIE2 (UniProt);GO=Biological Process: transcription from RNA polymerase II promoter (GO:0006366),Biological Process: transcription initiation from RNA polymerase II promoter (GO:0006367),Cellular Component: nucleus (GO:0005634),Cellular Component: transcription factor TFIIF complex (GO:0005674),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=Transcription initiation factor IIF%2C beta subunit (IPR003196),Transcription Factor IIF%2C Rap30/Rap74%2C interaction (IPR011039),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Transcription initiation factor IIF%2C beta subunit%2C subgroup (IPR016640);NIAS_FLcDNA=J023147N17;Oryzabase=18687;Expression=AK072992;TENOR=Os05t0509900-01;KEGG=Os05t0509900-01
Chr05	irgsp1_rep	five_prime_UTR	25263552	25263722	.	-	.	Parent=Os05t0509900-01
Chr05	irgsp1_rep	CDS	25263354	25263551	.	-	0	Parent=Os05t0509900-01
Chr05	irgsp1_rep	CDS	25262799	25262907	.	-	0	Parent=Os05t0509900-01
Chr05	irgsp1_rep	CDS	25261943	25262073	.	-	2	Parent=Os05t0509900-01
Chr05	irgsp1_rep	CDS	25261785	25261856	.	-	0	Parent=Os05t0509900-01
Chr05	irgsp1_rep	CDS	25261293	25261442	.	-	0	Parent=Os05t0509900-01
Chr05	irgsp1_rep	CDS	25261023	25261142	.	-	0	Parent=Os05t0509900-01
Chr05	irgsp1_rep	three_prime_UTR	25260687	25261022	.	-	.	Parent=Os05t0509900-01
Chr05	irgsp1_rep	mRNA	25266272	25267148	.	+	.	ID=Os05t0510100-01;Name=Os05t0510100-01;Locus_id=Os05g0510100;Note=Protein of unknown function DUF567 family protein.;Transcript_evidence=AK288419 (DDBJ%2C Best hit);ORF_evidence=NP_001056006.1 (RefSeq);InterPro=Tubby%2C C-terminal (IPR000007),Protein of unknown function DUF567 (IPR007612);NIAS_FLcDNA=J090031N17;TENOR=Os05t0510100-01;KEGG=Os05t0510100-01
Chr05	irgsp1_rep	five_prime_UTR	25266272	25266308	.	+	.	Parent=Os05t0510100-01
Chr05	irgsp1_rep	CDS	25266309	25267022	.	+	0	Parent=Os05t0510100-01
Chr05	irgsp1_rep	three_prime_UTR	25267023	25267148	.	+	.	Parent=Os05t0510100-01
Chr05	irgsp1_rep	mRNA	25267915	25272219	.	-	.	ID=Os05t0510200-01;Name=Os05t0510200-01;Locus_id=Os05g0510200;Note=Similar to Glycine-rich cell wall structural protein 1.0 precursor (GRP 1.0).;Transcript_evidence=AK064302 (DDBJ%2C Best hit);ORF_evidence=NP_190002.2 (RefSeq);GO=Cellular Component: outer membrane (GO:0019867);InterPro=Bacterial surface antigen (D15) (IPR000184);NIAS_FLcDNA=002-107-B04;Expression=AK064302;TENOR=Os05t0510200-01;KEGG=Os05t0510200-01
Chr05	irgsp1_rep	five_prime_UTR	25271937	25272219	.	-	.	Parent=Os05t0510200-01
Chr05	irgsp1_rep	CDS	25271903	25271936	.	-	0	Parent=Os05t0510200-01
Chr05	irgsp1_rep	CDS	25271740	25271806	.	-	2	Parent=Os05t0510200-01
Chr05	irgsp1_rep	CDS	25271609	25271644	.	-	1	Parent=Os05t0510200-01
Chr05	irgsp1_rep	CDS	25271136	25271280	.	-	1	Parent=Os05t0510200-01
Chr05	irgsp1_rep	CDS	25270451	25270609	.	-	0	Parent=Os05t0510200-01
Chr05	irgsp1_rep	CDS	25270272	25270342	.	-	0	Parent=Os05t0510200-01
Chr05	irgsp1_rep	CDS	25270111	25270189	.	-	1	Parent=Os05t0510200-01
Chr05	irgsp1_rep	CDS	25269923	25270038	.	-	0	Parent=Os05t0510200-01
Chr05	irgsp1_rep	CDS	25269697	25269844	.	-	1	Parent=Os05t0510200-01
Chr05	irgsp1_rep	CDS	25269058	25269127	.	-	0	Parent=Os05t0510200-01
Chr05	irgsp1_rep	CDS	25268308	25268468	.	-	2	Parent=Os05t0510200-01
Chr05	irgsp1_rep	three_prime_UTR	25267915	25268307	.	-	.	Parent=Os05t0510200-01
Chr05	irgsp1_rep	mRNA	25274418	25280068	.	+	.	ID=Os05t0510300-01;Name=Os05t0510300-01;Locus_id=Os05g0510300;CGSNL Gene Symbol=UBP7-3;CGSNL Gene Name=UBIQUITIN-SPECIFIC PROCESSING PROTEASE 7-3;Oryzabase Gene Symbol Synonym(s)=OsUBP7-3%2C OsUBP25%2C UBP25;Oryzabase Gene Name Synonym(s)=ubiquitin-specific processing protease 7-3%2C Ubiquitin-specific protease 25;Note=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 family protein.;Transcript_evidence=AK120186 (DDBJ%2C Best hit);ORF_evidence=B8AZU2 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Molecular Function: ubiquitin thiolesterase activity (GO:0004221);InterPro=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (IPR001394),Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2%2C conserved site (IPR018200);NIAS_FLcDNA=J013034M15;Oryzabase=22887;Expression=AK120186;TENOR=Os05t0510300-01;KEGG=Os05t0510300-01
Chr05	irgsp1_rep	five_prime_UTR	25274418	25274746	.	+	.	Parent=Os05t0510300-01
Chr05	irgsp1_rep	CDS	25274747	25274924	.	+	0	Parent=Os05t0510300-01
Chr05	irgsp1_rep	CDS	25275023	25275515	.	+	2	Parent=Os05t0510300-01
Chr05	irgsp1_rep	CDS	25276679	25276754	.	+	1	Parent=Os05t0510300-01
Chr05	irgsp1_rep	CDS	25276861	25276953	.	+	0	Parent=Os05t0510300-01
Chr05	irgsp1_rep	CDS	25277479	25277565	.	+	0	Parent=Os05t0510300-01
Chr05	irgsp1_rep	CDS	25277650	25278407	.	+	0	Parent=Os05t0510300-01
Chr05	irgsp1_rep	CDS	25278759	25278887	.	+	1	Parent=Os05t0510300-01
Chr05	irgsp1_rep	CDS	25279457	25279577	.	+	1	Parent=Os05t0510300-01
Chr05	irgsp1_rep	three_prime_UTR	25279578	25279688	.	+	.	Parent=Os05t0510300-01
Chr05	irgsp1_rep	three_prime_UTR	25279772	25280068	.	+	.	Parent=Os05t0510300-01
Chr05	irgsp1_rep	mRNA	25283108	25286665	.	+	.	ID=Os05t0510400-01;Name=Os05t0510400-01;Locus_id=Os05g0510400;Oryzabase Gene Symbol Synonym(s)=OsFbox266%2C Os_F0434;Oryzabase Gene Name Synonym(s)=F-box protein 266;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK068685 (DDBJ%2C Best hit);ORF_evidence=NP_001151246.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013161L06;Oryzabase=17048;Expression=AK068685;TENOR=Os05t0510400-01;KEGG=Os05t0510400-01
Chr05	irgsp1_rep	five_prime_UTR	25283108	25283186	.	+	.	Parent=Os05t0510400-01
Chr05	irgsp1_rep	CDS	25283187	25284425	.	+	0	Parent=Os05t0510400-01
Chr05	irgsp1_rep	three_prime_UTR	25284426	25284457	.	+	.	Parent=Os05t0510400-01
Chr05	irgsp1_rep	three_prime_UTR	25286139	25286665	.	+	.	Parent=Os05t0510400-01
Chr05	irgsp1_rep	mRNA	25283108	25286640	.	+	.	ID=Os05t0510400-02;Name=Os05t0510400-02;Locus_id=Os05g0510400;Oryzabase Gene Symbol Synonym(s)=OsFbox266%2C Os_F0434;Oryzabase Gene Name Synonym(s)=F-box protein 266;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK072274 (DDBJ%2C Best hit);ORF_evidence=NP_001151246.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023008A21;Oryzabase=17048;Expression=AK072274;TENOR=Os05t0510400-02;KEGG=Os05t0510400-02
Chr05	irgsp1_rep	five_prime_UTR	25283108	25283186	.	+	.	Parent=Os05t0510400-02
Chr05	irgsp1_rep	CDS	25283187	25284425	.	+	0	Parent=Os05t0510400-02
Chr05	irgsp1_rep	three_prime_UTR	25284426	25286640	.	+	.	Parent=Os05t0510400-02
Chr05	irgsp1_rep	mRNA	25291060	25293013	.	-	.	ID=Os05t0510600-01;Name=Os05t0510600-01;Locus_id=Os05g0510600;Note=Similar to tyrosine/DOPA decarboxylase 1.;Transcript_evidence=AK287444 (DDBJ%2C Best hit);ORF_evidence=NP_001147982.1 (RefSeq);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: carboxylic acid metabolic process (GO:0019752),Molecular Function: catalytic activity (GO:0003824),Molecular Function: carboxy-lyase activity (GO:0016831),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent decarboxylase (IPR002129),Aromatic-L-amino-acid decarboxylase (IPR010977),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J043016J03;TENOR=Os05t0510600-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	25292952	25293013	.	-	.	Parent=Os05t0510600-01
Chr05	irgsp1_rep	CDS	25291254	25292951	.	-	0	Parent=Os05t0510600-01
Chr05	irgsp1_rep	three_prime_UTR	25291060	25291253	.	-	.	Parent=Os05t0510600-01
Chr05	irgsp1_rep	mRNA	25295858	25299051	.	+	.	ID=Os05t0510700-01;Name=Os05t0510700-01;Locus_id=Os05g0510700;Note=Similar to BSD domain containing protein.;Transcript_evidence=AK070308 (DDBJ%2C Best hit);ORF_evidence=NP_001149272.1 (RefSeq);InterPro=BSD (IPR005607);NIAS_FLcDNA=J023049A10;TENOR=Os05t0510700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	25295858	25295859	.	+	.	Parent=Os05t0510700-01
Chr05	irgsp1_rep	CDS	25295860	25296361	.	+	0	Parent=Os05t0510700-01
Chr05	irgsp1_rep	CDS	25297405	25297592	.	+	2	Parent=Os05t0510700-01
Chr05	irgsp1_rep	CDS	25298238	25298741	.	+	0	Parent=Os05t0510700-01
Chr05	irgsp1_rep	three_prime_UTR	25298742	25299051	.	+	.	Parent=Os05t0510700-01
Chr05	irgsp1_rep	mRNA	25300845	25304673	.	-	.	ID=Os05t0510800-01;Name=Os05t0510800-01;Locus_id=Os05g0510800;CGSNL Gene Symbol=CSLC7;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE C7;Oryzabase Gene Symbol Synonym(s)=OsCslC7%2C OsCSLC7;Note=Similar to Cellulose synthase-like family C1 protein.;Transcript_evidence=AK243206 (DDBJ%2C Best hit);ORF_evidence=C8CBX3 (UniProt);InterPro=Glycosyl transferase%2C family 2 (IPR001173);NIAS_FLcDNA=J100041K21;Oryzabase=13894;TENOR=Os05t0510800-01;KEGG=Os05t0510800-01
Chr05	irgsp1_rep	five_prime_UTR	25304499	25304673	.	-	.	Parent=Os05t0510800-01
Chr05	irgsp1_rep	CDS	25303770	25304498	.	-	0	Parent=Os05t0510800-01
Chr05	irgsp1_rep	CDS	25302864	25303172	.	-	0	Parent=Os05t0510800-01
Chr05	irgsp1_rep	CDS	25302463	25302753	.	-	0	Parent=Os05t0510800-01
Chr05	irgsp1_rep	CDS	25302257	25302370	.	-	0	Parent=Os05t0510800-01
Chr05	irgsp1_rep	CDS	25301163	25301786	.	-	0	Parent=Os05t0510800-01
Chr05	irgsp1_rep	three_prime_UTR	25300845	25301162	.	-	.	Parent=Os05t0510800-01
Chr05	irgsp1_rep	mRNA	25303628	25304483	.	+	.	ID=Os05t0510932-00;Name=Os05t0510932-00;Locus_id=Os05g0510932;Note=Conserved hypothetical protein.;Transcript_evidence=BT066271 (DDBJ);ORF_evidence=NP_001182993.1 (RefSeq);TENOR=Os05t0510932-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	25303628	25303815	.	+	.	Parent=Os05t0510932-00
Chr05	irgsp1_rep	CDS	25303816	25303992	.	+	0	Parent=Os05t0510932-00
Chr05	irgsp1_rep	three_prime_UTR	25303993	25304483	.	+	.	Parent=Os05t0510932-00
Chr05	irgsp1_rep	mRNA	25312775	25316314	.	+	.	ID=Os05t0511000-01;Name=Os05t0511000-01;Locus_id=Os05g0511000;Note=TRAM%2C LAG1 and CLN8 homology domain containing protein.;Transcript_evidence=AK067012 (DDBJ%2C Best hit);ORF_evidence=NP_001149791.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=TRAM/LAG1/CLN8 homology domain (IPR006634);NIAS_FLcDNA=J013092A14;Expression=AK067012;TENOR=Os05t0511000-01;KEGG=Os05t0511000-01
Chr05	irgsp1_rep	five_prime_UTR	25312775	25312895	.	+	.	Parent=Os05t0511000-01
Chr05	irgsp1_rep	five_prime_UTR	25313680	25313705	.	+	.	Parent=Os05t0511000-01
Chr05	irgsp1_rep	CDS	25313706	25313834	.	+	0	Parent=Os05t0511000-01
Chr05	irgsp1_rep	CDS	25314139	25314227	.	+	0	Parent=Os05t0511000-01
Chr05	irgsp1_rep	CDS	25314325	25314460	.	+	1	Parent=Os05t0511000-01
Chr05	irgsp1_rep	CDS	25314543	25314617	.	+	0	Parent=Os05t0511000-01
Chr05	irgsp1_rep	CDS	25314768	25314889	.	+	0	Parent=Os05t0511000-01
Chr05	irgsp1_rep	CDS	25314992	25315067	.	+	1	Parent=Os05t0511000-01
Chr05	irgsp1_rep	CDS	25315554	25315613	.	+	0	Parent=Os05t0511000-01
Chr05	irgsp1_rep	CDS	25315695	25315823	.	+	0	Parent=Os05t0511000-01
Chr05	irgsp1_rep	three_prime_UTR	25315824	25316314	.	+	.	Parent=Os05t0511000-01
Chr05	irgsp1_rep	mRNA	25312822	25316140	.	+	.	ID=Os05t0511000-02;Name=Os05t0511000-02;Locus_id=Os05g0511000;Note=TRAM%2C LAG1 and CLN8 homology domain containing protein.;Transcript_evidence=AK104247 (DDBJ%2C Best hit),AK061738 (DDBJ%2C Best hit);ORF_evidence=NP_001149791.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=TRAM/LAG1/CLN8 homology domain (IPR006634);NIAS_FLcDNA=006-308-F07,001-038-D12;Expression=AK104247;TENOR=Os05t0511000-02;KEGG=Os05t0511000-02
Chr05	irgsp1_rep	five_prime_UTR	25312822	25312895	.	+	.	Parent=Os05t0511000-02
Chr05	irgsp1_rep	five_prime_UTR	25313680	25313705	.	+	.	Parent=Os05t0511000-02
Chr05	irgsp1_rep	CDS	25313706	25313834	.	+	0	Parent=Os05t0511000-02
Chr05	irgsp1_rep	CDS	25314139	25314227	.	+	0	Parent=Os05t0511000-02
Chr05	irgsp1_rep	CDS	25314325	25314460	.	+	1	Parent=Os05t0511000-02
Chr05	irgsp1_rep	CDS	25314543	25314617	.	+	0	Parent=Os05t0511000-02
Chr05	irgsp1_rep	CDS	25314768	25314889	.	+	0	Parent=Os05t0511000-02
Chr05	irgsp1_rep	CDS	25314992	25315067	.	+	1	Parent=Os05t0511000-02
Chr05	irgsp1_rep	CDS	25315554	25315613	.	+	0	Parent=Os05t0511000-02
Chr05	irgsp1_rep	CDS	25315695	25315823	.	+	0	Parent=Os05t0511000-02
Chr05	irgsp1_rep	three_prime_UTR	25315824	25316140	.	+	.	Parent=Os05t0511000-02
Chr05	irgsp1_rep	mRNA	25317044	25318342	.	+	.	ID=Os05t0511050-00;Name=Os05t0511050-00;Locus_id=Os05g0511050;Note=Similar to aspartyl protease family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_199325.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);TENOR=Os05t0511050-00
Chr05	irgsp1_rep	CDS	25317044	25318342	.	+	0	Parent=Os05t0511050-00
Chr05	irgsp1_rep	mRNA	25319047	25319114	.	+	.	ID=Os05t0511133-00;Name=Os05t0511133-00;Locus_id=Os05g0511133;Note=Non-protein coding transcript.;Transcript_evidence=X06284 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0511133-00
Chr05	irgsp1_rep	exon	25319047	25319114	.	+	.	Parent=Os05t0511133-00
Chr05	irgsp1_rep	mRNA	25321060	25321127	.	+	.	ID=Os05t0511216-00;Name=Os05t0511216-00;Locus_id=Os05g0511216;Note=Non-protein coding transcript.;Transcript_evidence=X06283 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0511216-00
Chr05	irgsp1_rep	exon	25321060	25321127	.	+	.	Parent=Os05t0511216-00
Chr05	irgsp1_rep	mRNA	25321363	25330862	.	-	.	ID=Os05t0511300-01;Name=Os05t0511300-01;Locus_id=Os05g0511300;Note=N2227-like domain containing protein.;Transcript_evidence=AK070791 (DDBJ%2C Best hit);ORF_evidence=B8AZU3 (UniProt);InterPro=N2227-like (IPR012901);NIAS_FLcDNA=J023064E24;Expression=AK070791;TENOR=Os05t0511300-01;KEGG=Os05t0511300-01
Chr05	irgsp1_rep	five_prime_UTR	25330727	25330862	.	-	.	Parent=Os05t0511300-01
Chr05	irgsp1_rep	CDS	25330647	25330726	.	-	0	Parent=Os05t0511300-01
Chr05	irgsp1_rep	CDS	25328503	25328575	.	-	1	Parent=Os05t0511300-01
Chr05	irgsp1_rep	CDS	25328309	25328352	.	-	0	Parent=Os05t0511300-01
Chr05	irgsp1_rep	CDS	25327942	25327984	.	-	1	Parent=Os05t0511300-01
Chr05	irgsp1_rep	CDS	25327604	25327828	.	-	0	Parent=Os05t0511300-01
Chr05	irgsp1_rep	CDS	25327058	25327213	.	-	0	Parent=Os05t0511300-01
Chr05	irgsp1_rep	CDS	25326547	25326612	.	-	0	Parent=Os05t0511300-01
Chr05	irgsp1_rep	CDS	25326001	25326045	.	-	0	Parent=Os05t0511300-01
Chr05	irgsp1_rep	CDS	25325816	25325895	.	-	0	Parent=Os05t0511300-01
Chr05	irgsp1_rep	CDS	25325152	25325216	.	-	1	Parent=Os05t0511300-01
Chr05	irgsp1_rep	CDS	25325000	25325066	.	-	2	Parent=Os05t0511300-01
Chr05	irgsp1_rep	CDS	25324784	25324897	.	-	1	Parent=Os05t0511300-01
Chr05	irgsp1_rep	CDS	25324159	25324232	.	-	1	Parent=Os05t0511300-01
Chr05	irgsp1_rep	CDS	25323188	25323285	.	-	2	Parent=Os05t0511300-01
Chr05	irgsp1_rep	CDS	25322967	25323026	.	-	0	Parent=Os05t0511300-01
Chr05	irgsp1_rep	CDS	25322785	25322853	.	-	0	Parent=Os05t0511300-01
Chr05	irgsp1_rep	CDS	25322479	25322532	.	-	0	Parent=Os05t0511300-01
Chr05	irgsp1_rep	CDS	25321737	25321808	.	-	0	Parent=Os05t0511300-01
Chr05	irgsp1_rep	three_prime_UTR	25321363	25321736	.	-	.	Parent=Os05t0511300-01
Chr05	irgsp1_rep	mRNA	25331884	25339595	.	-	.	ID=Os05t0511400-01;Name=Os05t0511400-01;Locus_id=Os05g0511400;Note=Similar to Protein kinase GhCLK1 (Fragment).;Transcript_evidence=AK101120 (DDBJ%2C Best hit);ORF_evidence=Q6L6R7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),AGC-kinase%2C C-terminal (IPR000961),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Protein kinase%2C C-terminal (IPR017892);NIAS_FLcDNA=J033025I17;Expression=AK101120;TENOR=Os05t0511400-01;KEGG=Os05t0511400-01 (EC:2.7.11.-)
Chr05	irgsp1_rep	five_prime_UTR	25339393	25339595	.	-	.	Parent=Os05t0511400-01
Chr05	irgsp1_rep	five_prime_UTR	25338542	25338706	.	-	.	Parent=Os05t0511400-01
Chr05	irgsp1_rep	CDS	25338330	25338541	.	-	0	Parent=Os05t0511400-01
Chr05	irgsp1_rep	CDS	25336841	25337015	.	-	1	Parent=Os05t0511400-01
Chr05	irgsp1_rep	CDS	25335720	25335803	.	-	0	Parent=Os05t0511400-01
Chr05	irgsp1_rep	CDS	25335393	25335634	.	-	0	Parent=Os05t0511400-01
Chr05	irgsp1_rep	CDS	25335083	25335317	.	-	1	Parent=Os05t0511400-01
Chr05	irgsp1_rep	CDS	25334357	25334436	.	-	0	Parent=Os05t0511400-01
Chr05	irgsp1_rep	CDS	25334172	25334256	.	-	1	Parent=Os05t0511400-01
Chr05	irgsp1_rep	CDS	25333591	25333722	.	-	0	Parent=Os05t0511400-01
Chr05	irgsp1_rep	CDS	25333396	25333509	.	-	0	Parent=Os05t0511400-01
Chr05	irgsp1_rep	CDS	25333062	25333109	.	-	0	Parent=Os05t0511400-01
Chr05	irgsp1_rep	CDS	25332573	25332657	.	-	0	Parent=Os05t0511400-01
Chr05	irgsp1_rep	CDS	25332405	25332461	.	-	2	Parent=Os05t0511400-01
Chr05	irgsp1_rep	CDS	25332194	25332315	.	-	2	Parent=Os05t0511400-01
Chr05	irgsp1_rep	three_prime_UTR	25331884	25332193	.	-	.	Parent=Os05t0511400-01
Chr05	irgsp1_rep	mRNA	25343800	25346243	.	+	.	ID=Os05t0511500-01;Name=Os05t0511500-01;Locus_id=Os05g0511500;Note=Similar to Lipoic acid synthase-like protein.;Transcript_evidence=AK101807 (DDBJ%2C Best hit);ORF_evidence=Q6L534 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: lipoate biosynthetic process (GO:0009107),Molecular Function: catalytic activity (GO:0003824),Molecular Function: lipoate synthase activity (GO:0016992),Molecular Function: iron-sulfur cluster binding (GO:0051536),Molecular Function: 4 iron%2C 4 sulfur cluster binding (GO:0051539);InterPro=Lipoate synthase (IPR003698),Elongator protein 3/MiaB/NifB (IPR006638),Radical SAM (IPR007197),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J033066K16;Expression=AK101807;TENOR=Os05t0511500-01;KEGG=Os05t0511500-01 (EC:2.8.1.8)
Chr05	irgsp1_rep	five_prime_UTR	25343800	25343824	.	+	.	Parent=Os05t0511500-01
Chr05	irgsp1_rep	CDS	25343825	25344178	.	+	0	Parent=Os05t0511500-01
Chr05	irgsp1_rep	CDS	25344322	25344503	.	+	0	Parent=Os05t0511500-01
Chr05	irgsp1_rep	CDS	25344596	25344686	.	+	1	Parent=Os05t0511500-01
Chr05	irgsp1_rep	CDS	25344764	25344921	.	+	0	Parent=Os05t0511500-01
Chr05	irgsp1_rep	CDS	25345234	25345405	.	+	1	Parent=Os05t0511500-01
Chr05	irgsp1_rep	CDS	25345502	25345612	.	+	0	Parent=Os05t0511500-01
Chr05	irgsp1_rep	CDS	25345876	25345962	.	+	0	Parent=Os05t0511500-01
Chr05	irgsp1_rep	three_prime_UTR	25345963	25346243	.	+	.	Parent=Os05t0511500-01
Chr05	irgsp1_rep	mRNA	25346821	25349309	.	+	.	ID=Os05t0511700-01;Name=Os05t0511700-01;Locus_id=Os05g0511700;Note=Putative rRNA methylase family protein.;Transcript_evidence=AK063707 (DDBJ%2C Best hit);ORF_evidence=NP_683312.2 (RefSeq);InterPro=Putative rRNA methylase (IPR010719);NIAS_FLcDNA=001-119-H07;Expression=AK063707;TENOR=Os05t0511700-01;KEGG=Os05t0511700-01
Chr05	irgsp1_rep	five_prime_UTR	25346821	25346936	.	+	.	Parent=Os05t0511700-01
Chr05	irgsp1_rep	CDS	25346937	25347102	.	+	0	Parent=Os05t0511700-01
Chr05	irgsp1_rep	CDS	25347214	25347283	.	+	2	Parent=Os05t0511700-01
Chr05	irgsp1_rep	CDS	25347557	25347749	.	+	1	Parent=Os05t0511700-01
Chr05	irgsp1_rep	CDS	25348090	25348163	.	+	0	Parent=Os05t0511700-01
Chr05	irgsp1_rep	CDS	25348308	25348463	.	+	1	Parent=Os05t0511700-01
Chr05	irgsp1_rep	CDS	25348728	25348851	.	+	1	Parent=Os05t0511700-01
Chr05	irgsp1_rep	three_prime_UTR	25348852	25349309	.	+	.	Parent=Os05t0511700-01
Chr05	irgsp1_rep	mRNA	25350274	25351572	.	-	.	ID=Os05t0511800-00;Name=Os05t0511800-00;Locus_id=Os05g0511800;Note=Protease inhibitor I4%2C serpin domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5TKI0 (UniProt);GO=Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Protease inhibitor I4%2C serpin (IPR000215),Protease inhibitor I4%2C serpin%2C plant (IPR015554),Serpin domain (IPR023796);TENOR=Os05t0511800-00
Chr05	irgsp1_rep	CDS	25350663	25351572	.	-	0	Parent=Os05t0511800-00
Chr05	irgsp1_rep	CDS	25350274	25350383	.	-	2	Parent=Os05t0511800-00
Chr05	irgsp1_rep	mRNA	25357253	25362761	.	-	.	ID=Os05t0512000-01;Name=Os05t0512000-01;Locus_id=Os05g0512000;Oryzabase Gene Symbol Synonym(s)=OsBRCA1;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK102433 (DDBJ%2C Best hit);ORF_evidence=B8AZY1 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=BRCT (IPR001357),Zinc finger%2C RING-type (IPR001841),Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J033093I12;Oryzabase=11610;Expression=AK102433;TENOR=Os05t0512000-01;KEGG=Os05t0512000-01
Chr05	irgsp1_rep	five_prime_UTR	25362690	25362761	.	-	.	Parent=Os05t0512000-01
Chr05	irgsp1_rep	CDS	25362634	25362689	.	-	0	Parent=Os05t0512000-01
Chr05	irgsp1_rep	CDS	25362327	25362380	.	-	1	Parent=Os05t0512000-01
Chr05	irgsp1_rep	CDS	25362142	25362212	.	-	1	Parent=Os05t0512000-01
Chr05	irgsp1_rep	CDS	25361619	25361732	.	-	2	Parent=Os05t0512000-01
Chr05	irgsp1_rep	CDS	25360812	25361284	.	-	2	Parent=Os05t0512000-01
Chr05	irgsp1_rep	CDS	25360637	25360735	.	-	0	Parent=Os05t0512000-01
Chr05	irgsp1_rep	CDS	25359532	25360506	.	-	0	Parent=Os05t0512000-01
Chr05	irgsp1_rep	CDS	25359312	25359412	.	-	0	Parent=Os05t0512000-01
Chr05	irgsp1_rep	CDS	25359031	25359217	.	-	1	Parent=Os05t0512000-01
Chr05	irgsp1_rep	CDS	25358802	25358902	.	-	0	Parent=Os05t0512000-01
Chr05	irgsp1_rep	CDS	25358601	25358709	.	-	1	Parent=Os05t0512000-01
Chr05	irgsp1_rep	CDS	25358336	25358501	.	-	0	Parent=Os05t0512000-01
Chr05	irgsp1_rep	CDS	25358122	25358240	.	-	2	Parent=Os05t0512000-01
Chr05	irgsp1_rep	CDS	25357405	25357743	.	-	0	Parent=Os05t0512000-01
Chr05	irgsp1_rep	three_prime_UTR	25357253	25357404	.	-	.	Parent=Os05t0512000-01
Chr05	irgsp1_rep	mRNA	25379151	25379875	.	-	.	ID=Os05t0512050-00;Name=Os05t0512050-00;Locus_id=Os05g0512050;Note=Conserved hypothetical protein.;Transcript_evidence=AK373217 (DDBJ);ORF_evidence=F2EAP2 (UniProt);TENOR=Os05t0512050-00
Chr05	irgsp1_rep	five_prime_UTR	25379781	25379875	.	-	.	Parent=Os05t0512050-00
Chr05	irgsp1_rep	CDS	25379151	25379780	.	-	0	Parent=Os05t0512050-00
Chr05	irgsp1_rep	mRNA	25379290	25380110	.	+	.	ID=Os05t0512100-00;Name=Os05t0512100-00;Locus_id=Os05g0512100;Note=Uncharacterised conserved protein UCP031279 domain containing protein.;Transcript_evidence=FP093769 (DDBJ);ORF_evidence=NP_001174486.1 (RefSeq);InterPro=Uncharacterised conserved protein UCP031279 (IPR016972);TENOR=Os05t0512100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	25379290	25379292	.	+	.	Parent=Os05t0512100-00
Chr05	irgsp1_rep	CDS	25379293	25379823	.	+	0	Parent=Os05t0512100-00
Chr05	irgsp1_rep	three_prime_UTR	25379824	25380110	.	+	.	Parent=Os05t0512100-00
Chr05	irgsp1_rep	mRNA	25382364	25385526	.	+	.	ID=Os05t0512200-01;Name=Os05t0512200-01;Locus_id=Os05g0512200;Note=Similar to T4P13.26 protein.;Transcript_evidence=AK287994 (DDBJ%2C Best hit);ORF_evidence=Q9MAC0 (UniProt);NIAS_FLcDNA=J075099E21;TENOR=Os05t0512200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	25382364	25382386	.	+	.	Parent=Os05t0512200-01
Chr05	irgsp1_rep	CDS	25382387	25382644	.	+	0	Parent=Os05t0512200-01
Chr05	irgsp1_rep	CDS	25382721	25382867	.	+	0	Parent=Os05t0512200-01
Chr05	irgsp1_rep	CDS	25382933	25383194	.	+	0	Parent=Os05t0512200-01
Chr05	irgsp1_rep	CDS	25383298	25383516	.	+	2	Parent=Os05t0512200-01
Chr05	irgsp1_rep	CDS	25384202	25384344	.	+	2	Parent=Os05t0512200-01
Chr05	irgsp1_rep	CDS	25384912	25385211	.	+	0	Parent=Os05t0512200-01
Chr05	irgsp1_rep	three_prime_UTR	25385212	25385526	.	+	.	Parent=Os05t0512200-01
Chr05	irgsp1_rep	mRNA	25387145	25387923	.	-	.	ID=Os05t0512301-00;Name=Os05t0512301-00;Locus_id=Os05g0512301;Note=Similar to CLE family OsCLE508 protein.;Transcript_evidence=CT836357 (DDBJ%2C Best hit);ORF_evidence=A8R3Q5 (UniProt);TENOR=Os05t0512301-00;KEGG=Os05t0512301-00
Chr05	irgsp1_rep	five_prime_UTR	25387839	25387923	.	-	.	Parent=Os05t0512301-00
Chr05	irgsp1_rep	CDS	25387476	25387838	.	-	0	Parent=Os05t0512301-00
Chr05	irgsp1_rep	three_prime_UTR	25387145	25387475	.	-	.	Parent=Os05t0512301-00
Chr05	irgsp1_rep	mRNA	25390732	25392479	.	-	.	ID=Os05t0512400-01;Name=Os05t0512400-01;Locus_id=Os05g0512400;Note=IQ motif%2C EF-hand binding site domain containing protein.;Transcript_evidence=AK120770 (DDBJ%2C Best hit);ORF_evidence=B9FL34 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: chaperone binding (GO:0051087);InterPro=IQ motif%2C EF-hand binding site (IPR000048),BAG domain (IPR003103);NIAS_FLcDNA=J023008H10;TENOR=Os05t0512400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	25392432	25392479	.	-	.	Parent=Os05t0512400-01
Chr05	irgsp1_rep	CDS	25391613	25392431	.	-	0	Parent=Os05t0512400-01
Chr05	irgsp1_rep	CDS	25391115	25391528	.	-	0	Parent=Os05t0512400-01
Chr05	irgsp1_rep	three_prime_UTR	25390732	25391114	.	-	.	Parent=Os05t0512400-01
Chr05	irgsp1_rep	mRNA	25392886	25396045	.	-	.	ID=Os05t0512500-01;Name=Os05t0512500-01;Locus_id=Os05g0512500;Note=CT20 family protein.;Transcript_evidence=AK062441 (DDBJ%2C Best hit);ORF_evidence=B8AZY4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Cellular Component: H4/H2A histone acetyltransferase complex (GO:0043189);InterPro=Chromatin modification-related protein EAF7 (IPR012423);NIAS_FLcDNA=001-103-A12;Expression=AK062441;TENOR=Os05t0512500-01;KEGG=Os05t0512500-01
Chr05	irgsp1_rep	five_prime_UTR	25395959	25396045	.	-	.	Parent=Os05t0512500-01
Chr05	irgsp1_rep	CDS	25395869	25395958	.	-	0	Parent=Os05t0512500-01
Chr05	irgsp1_rep	CDS	25395680	25395752	.	-	0	Parent=Os05t0512500-01
Chr05	irgsp1_rep	CDS	25393704	25393755	.	-	2	Parent=Os05t0512500-01
Chr05	irgsp1_rep	CDS	25393560	25393629	.	-	1	Parent=Os05t0512500-01
Chr05	irgsp1_rep	CDS	25393311	25393394	.	-	0	Parent=Os05t0512500-01
Chr05	irgsp1_rep	three_prime_UTR	25393264	25393310	.	-	.	Parent=Os05t0512500-01
Chr05	irgsp1_rep	three_prime_UTR	25392886	25393073	.	-	.	Parent=Os05t0512500-01
Chr05	irgsp1_rep	mRNA	25399448	25401593	.	+	.	ID=Os05t0512600-01;Name=Os05t0512600-01;Locus_id=Os05g0512600;Note=X8 domain containing protein.;Transcript_evidence=AK101753 (DDBJ%2C Best hit);ORF_evidence=NP_001151015.1 (RefSeq);InterPro=X8 (IPR012946);NIAS_FLcDNA=J033063E20;Expression=AK101753;TENOR=Os05t0512600-01;KEGG=Os05t0512600-01
Chr05	irgsp1_rep	five_prime_UTR	25399448	25399564	.	+	.	Parent=Os05t0512600-01
Chr05	irgsp1_rep	CDS	25399565	25399616	.	+	0	Parent=Os05t0512600-01
Chr05	irgsp1_rep	CDS	25399988	25400261	.	+	2	Parent=Os05t0512600-01
Chr05	irgsp1_rep	CDS	25401021	25401381	.	+	1	Parent=Os05t0512600-01
Chr05	irgsp1_rep	three_prime_UTR	25401382	25401593	.	+	.	Parent=Os05t0512600-01
Chr05	irgsp1_rep	mRNA	25436359	25438597	.	+	.	ID=Os05t0513100-01;Name=Os05t0513100-01;Locus_id=Os05g0513100;Oryzabase Gene Symbol Synonym(s)=OsTCP18%2C TCP18;Oryzabase Gene Name Synonym(s)=TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 18;Note=Similar to PlCYC4 protein (Fragment).;Transcript_evidence=AK069938 (DDBJ%2C Best hit);ORF_evidence=NP_001147718.1 (RefSeq);InterPro=Transcription factor%2C TCP (IPR005333),Transcription factor TCP subgroup (IPR017887);NIAS_FLcDNA=J023038I07;Oryzabase=12383;Expression=AK069938;TENOR=Os05t0513100-01;KEGG=Os05t0513100-01
Chr05	irgsp1_rep	five_prime_UTR	25436359	25436636	.	+	.	Parent=Os05t0513100-01
Chr05	irgsp1_rep	five_prime_UTR	25437338	25437359	.	+	.	Parent=Os05t0513100-01
Chr05	irgsp1_rep	CDS	25437360	25438244	.	+	0	Parent=Os05t0513100-01
Chr05	irgsp1_rep	three_prime_UTR	25438245	25438597	.	+	.	Parent=Os05t0513100-01
Chr05	irgsp1_rep	mRNA	25446943	25452141	.	+	.	ID=Os05t0513200-00;Name=Os05t0513200-00;Locus_id=Os05g0513200;Note=NLI interacting factor domain containing protein.;Transcript_evidence=AK375166 (DDBJ);ORF_evidence=B4FBH4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=NLI interacting factor (IPR004274),HAD-like domain (IPR023214);TENOR=Os05t0513200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	25446943	25447225	.	+	0	Parent=Os05t0513200-00
Chr05	irgsp1_rep	CDS	25447359	25447453	.	+	2	Parent=Os05t0513200-00
Chr05	irgsp1_rep	CDS	25447905	25447941	.	+	0	Parent=Os05t0513200-00
Chr05	irgsp1_rep	CDS	25448470	25448531	.	+	2	Parent=Os05t0513200-00
Chr05	irgsp1_rep	CDS	25448617	25448730	.	+	0	Parent=Os05t0513200-00
Chr05	irgsp1_rep	CDS	25449560	25449664	.	+	0	Parent=Os05t0513200-00
Chr05	irgsp1_rep	CDS	25449753	25449851	.	+	0	Parent=Os05t0513200-00
Chr05	irgsp1_rep	CDS	25450515	25450671	.	+	0	Parent=Os05t0513200-00
Chr05	irgsp1_rep	CDS	25450785	25450887	.	+	2	Parent=Os05t0513200-00
Chr05	irgsp1_rep	CDS	25451974	25452019	.	+	1	Parent=Os05t0513200-00
Chr05	irgsp1_rep	three_prime_UTR	25452020	25452141	.	+	.	Parent=Os05t0513200-00
Chr05	irgsp1_rep	mRNA	25453751	25455599	.	+	.	ID=Os05t0513300-00;Name=Os05t0513300-00;Locus_id=Os05g0513300;Note=Hypothetical conserved gene.;Transcript_evidence=EU946737 (DDBJ);ORF_evidence=NP_001056026.2 (RefSeq);TENOR=Os05t0513300-00;KEGG=Os05t0513300-00
Chr05	irgsp1_rep	five_prime_UTR	25453751	25453808	.	+	.	Parent=Os05t0513300-00
Chr05	irgsp1_rep	CDS	25453809	25453901	.	+	0	Parent=Os05t0513300-00
Chr05	irgsp1_rep	CDS	25454034	25454111	.	+	0	Parent=Os05t0513300-00
Chr05	irgsp1_rep	CDS	25454895	25454933	.	+	0	Parent=Os05t0513300-00
Chr05	irgsp1_rep	CDS	25455036	25455599	.	+	0	Parent=Os05t0513300-00
Chr05	irgsp1_rep	mRNA	25456387	25456876	.	+	.	ID=Os05t0513350-00;Name=Os05t0513350-00;Locus_id=Os05g0513350;Note=Similar to predicted protein.;Transcript_evidence=EU943444 (DDBJ);ORF_evidence=O81698 (UniProt);TENOR=Os05t0513350-00;KEGG=Os05t0513350-00
Chr05	irgsp1_rep	five_prime_UTR	25456387	25456462	.	+	.	Parent=Os05t0513350-00
Chr05	irgsp1_rep	CDS	25456564	25456677	.	+	0	Parent=Os05t0513350-00
Chr05	irgsp1_rep	three_prime_UTR	25456678	25456876	.	+	.	Parent=Os05t0513350-00
Chr05	irgsp1_rep	mRNA	25458603	25461049	.	+	.	ID=Os05t0513400-01;Name=Os05t0513400-01;Locus_id=Os05g0513400;Note=Similar to non-imprinted in Prader-Willi/Angelman syndrome region protein 1.;Transcript_evidence=AK121638 (DDBJ%2C Best hit);ORF_evidence=NP_001148908.1 (RefSeq);InterPro=Protein of unknown function DUF803 (IPR008521);NIAS_FLcDNA=J033052K11;Expression=AK121638;TENOR=Os05t0513400-01;KEGG=Os05t0513400-01
Chr05	irgsp1_rep	five_prime_UTR	25458603	25458843	.	+	.	Parent=Os05t0513400-01
Chr05	irgsp1_rep	CDS	25458844	25458997	.	+	0	Parent=Os05t0513400-01
Chr05	irgsp1_rep	CDS	25459079	25459135	.	+	2	Parent=Os05t0513400-01
Chr05	irgsp1_rep	CDS	25459235	25459325	.	+	2	Parent=Os05t0513400-01
Chr05	irgsp1_rep	CDS	25459439	25459463	.	+	1	Parent=Os05t0513400-01
Chr05	irgsp1_rep	three_prime_UTR	25459464	25459594	.	+	.	Parent=Os05t0513400-01
Chr05	irgsp1_rep	three_prime_UTR	25459733	25459860	.	+	.	Parent=Os05t0513400-01
Chr05	irgsp1_rep	three_prime_UTR	25459963	25461049	.	+	.	Parent=Os05t0513400-01
Chr05	irgsp1_rep	mRNA	25458648	25462078	.	+	.	ID=Os05t0513400-02;Name=Os05t0513400-02;Locus_id=Os05g0513400;Note=Protein of unknown function DUF803 family protein.;Transcript_evidence=AK069309 (DDBJ%2C Best hit);ORF_evidence=NP_001148908.1 (RefSeq);InterPro=Protein of unknown function DUF803 (IPR008521);NIAS_FLcDNA=J023012B05;Expression=AK069309;TENOR=Os05t0513400-02;KEGG=Os05t0513400-02
Chr05	irgsp1_rep	five_prime_UTR	25458648	25458843	.	+	.	Parent=Os05t0513400-02
Chr05	irgsp1_rep	CDS	25458844	25458997	.	+	0	Parent=Os05t0513400-02
Chr05	irgsp1_rep	CDS	25459079	25459135	.	+	2	Parent=Os05t0513400-02
Chr05	irgsp1_rep	CDS	25459235	25459325	.	+	2	Parent=Os05t0513400-02
Chr05	irgsp1_rep	CDS	25459434	25459594	.	+	1	Parent=Os05t0513400-02
Chr05	irgsp1_rep	CDS	25459733	25459860	.	+	2	Parent=Os05t0513400-02
Chr05	irgsp1_rep	CDS	25459963	25460100	.	+	0	Parent=Os05t0513400-02
Chr05	irgsp1_rep	CDS	25460622	25460714	.	+	0	Parent=Os05t0513400-02
Chr05	irgsp1_rep	CDS	25461329	25461449	.	+	0	Parent=Os05t0513400-02
Chr05	irgsp1_rep	CDS	25461544	25461665	.	+	2	Parent=Os05t0513400-02
Chr05	irgsp1_rep	three_prime_UTR	25461666	25462078	.	+	.	Parent=Os05t0513400-02
Chr05	irgsp1_rep	mRNA	25458856	25460715	.	-	.	ID=Os05t0513450-00;Name=Os05t0513450-00;Locus_id=Os05g0513450;Note=Hypothetical protein.;Transcript_evidence=tplb0026d01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0513450-00
Chr05	irgsp1_rep	five_prime_UTR	25460626	25460715	.	-	.	Parent=Os05t0513450-00
Chr05	irgsp1_rep	five_prime_UTR	25459924	25460102	.	-	.	Parent=Os05t0513450-00
Chr05	irgsp1_rep	five_prime_UTR	25459506	25459698	.	-	.	Parent=Os05t0513450-00
Chr05	irgsp1_rep	CDS	25459430	25459505	.	-	0	Parent=Os05t0513450-00
Chr05	irgsp1_rep	CDS	25459217	25459321	.	-	2	Parent=Os05t0513450-00
Chr05	irgsp1_rep	CDS	25458856	25459033	.	-	2	Parent=Os05t0513450-00
Chr05	irgsp1_rep	mRNA	25462659	25464305	.	+	.	ID=Os05t0513500-01;Name=Os05t0513500-01;Locus_id=Os05g0513500;Note=Similar to 50S ribosomal protein L33.;Transcript_evidence=AK287552 (DDBJ%2C Best hit);ORF_evidence=C5Z0W6 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L33 (IPR001705),Ribosomal protein%2C zinc-binding domain (IPR011332),Ribosomal protein L33%2C conserved site (IPR018264);NIAS_FLcDNA=J065018G21;TENOR=Os05t0513500-01;KEGG=Os05t0513500-01
Chr05	irgsp1_rep	five_prime_UTR	25462659	25462830	.	+	.	Parent=Os05t0513500-01
Chr05	irgsp1_rep	five_prime_UTR	25463997	25464024	.	+	.	Parent=Os05t0513500-01
Chr05	irgsp1_rep	CDS	25464025	25464198	.	+	0	Parent=Os05t0513500-01
Chr05	irgsp1_rep	three_prime_UTR	25464199	25464305	.	+	.	Parent=Os05t0513500-01
Chr05	irgsp1_rep	mRNA	25464547	25466433	.	-	.	ID=Os05t0513600-01;Name=Os05t0513600-01;Locus_id=Os05g0513600;Note=Conserved hypothetical protein.;Transcript_evidence=AK106888 (DDBJ%2C Best hit);ORF_evidence=B9FGR7 (UniProt);NIAS_FLcDNA=002-118-G01;Expression=AK106888;TENOR=Os05t0513600-01;KEGG=Os05t0513600-01
Chr05	irgsp1_rep	five_prime_UTR	25466426	25466433	.	-	.	Parent=Os05t0513600-01
Chr05	irgsp1_rep	CDS	25465982	25466425	.	-	0	Parent=Os05t0513600-01
Chr05	irgsp1_rep	CDS	25465016	25465822	.	-	0	Parent=Os05t0513600-01
Chr05	irgsp1_rep	three_prime_UTR	25464547	25465015	.	-	.	Parent=Os05t0513600-01
Chr05	irgsp1_rep	mRNA	25467047	25469495	.	-	.	ID=Os05t0513700-00;Name=Os05t0513700-00;Locus_id=Os05g0513700;Note=Reticulon domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q68Y53 (UniProt);GO=Cellular Component: endoplasmic reticulum (GO:0005783);InterPro=Reticulon (IPR003388),Nucleotide-diphospho-sugar transferase (IPR005069);TENOR=Os05t0513700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	25469098	25469495	.	-	0	Parent=Os05t0513700-00
Chr05	irgsp1_rep	CDS	25468769	25469021	.	-	1	Parent=Os05t0513700-00
Chr05	irgsp1_rep	CDS	25467635	25467881	.	-	0	Parent=Os05t0513700-00
Chr05	irgsp1_rep	CDS	25467047	25467522	.	-	2	Parent=Os05t0513700-00
Chr05	irgsp1_rep	mRNA	25474799	25477024	.	+	.	ID=Os05t0513800-01;Name=Os05t0513800-01;Locus_id=Os05g0513800;CGSNL Gene Symbol=RAC2;CGSNL Gene Name=RAC/ROP-TYPE GTPASE 2;Oryzabase Gene Symbol Synonym(s)=OsRAC2%2C OsRac2;Oryzabase Gene Name Synonym(s)=Rac-like GTP-binding protein 2%2C Rac/Rop-type GTPase 2;Note=Small GTP-binding protein OsRac2.;Transcript_evidence=AK101866 (DDBJ%2C Best hit);ORF_evidence=Q68Y52 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: intracellular protein transport (GO:0006886),Biological Process: nucleocytoplasmic transport (GO:0006913),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Cellular Component: membrane (GO:0016020),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Ran GTPase (IPR002041),Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C Ras type (IPR020849);NIAS_FLcDNA=J033070C18;Oryzabase=6766;Expression=AK101866;TENOR=Os05t0513800-01;KEGG=Os05t0513800-01
Chr05	irgsp1_rep	five_prime_UTR	25474799	25475004	.	+	.	Parent=Os05t0513800-01
Chr05	irgsp1_rep	CDS	25475005	25475106	.	+	0	Parent=Os05t0513800-01
Chr05	irgsp1_rep	CDS	25475294	25475381	.	+	0	Parent=Os05t0513800-01
Chr05	irgsp1_rep	CDS	25475498	25475607	.	+	2	Parent=Os05t0513800-01
Chr05	irgsp1_rep	CDS	25475854	25475917	.	+	0	Parent=Os05t0513800-01
Chr05	irgsp1_rep	CDS	25476025	25476089	.	+	2	Parent=Os05t0513800-01
Chr05	irgsp1_rep	CDS	25476176	25476241	.	+	0	Parent=Os05t0513800-01
Chr05	irgsp1_rep	CDS	25476396	25476511	.	+	0	Parent=Os05t0513800-01
Chr05	irgsp1_rep	CDS	25476694	25476727	.	+	1	Parent=Os05t0513800-01
Chr05	irgsp1_rep	three_prime_UTR	25476728	25477024	.	+	.	Parent=Os05t0513800-01
Chr05	irgsp1_rep	mRNA	25476232	25478181	.	+	.	ID=Os05t0513800-02;Name=Os05t0513800-02;Locus_id=Os05g0513800;CGSNL Gene Symbol=RAC2;CGSNL Gene Name=RAC/ROP-TYPE GTPASE 2;Oryzabase Gene Symbol Synonym(s)=OsRAC2%2C OsRac2;Oryzabase Gene Name Synonym(s)=Rac-like GTP-binding protein 2%2C Rac/Rop-type GTPase 2;Note=Similar to Rac-like GTP-binding protein 2.;Transcript_evidence=AK063536 (DDBJ%2C Best hit);ORF_evidence=Q68Y52 (UniProt);NIAS_FLcDNA=001-117-B11;Oryzabase=6766;Expression=AK063536;TENOR=Os05t0513800-02;KEGG=Os05t0513800-02
Chr05	irgsp1_rep	five_prime_UTR	25476232	25476395	.	+	.	Parent=Os05t0513800-02
Chr05	irgsp1_rep	CDS	25476396	25476515	.	+	0	Parent=Os05t0513800-02
Chr05	irgsp1_rep	three_prime_UTR	25476516	25478181	.	+	.	Parent=Os05t0513800-02
Chr05	irgsp1_rep	mRNA	25477119	25483468	.	-	.	ID=Os05t0513900-01;Name=Os05t0513900-01;Locus_id=Os05g0513900;Note=Similar to Proline iminopeptidase (EC 3.4.11.5) (PIP) (Prolyl aminopeptidase) (PAP).;Transcript_evidence=AK100825 (DDBJ%2C Best hit);ORF_evidence=B4FQC9 (UniProt);GO=Cellular Component: cytoplasm (GO:0005737),Molecular Function: aminopeptidase activity (GO:0004177);InterPro=Alpha/beta hydrolase fold-1 (IPR000073),Peptidase S33%2C proline iminopeptidase 1 (IPR005944);NIAS_FLcDNA=J023122K10;TENOR=Os05t0513900-01
Chr05	irgsp1_rep	CDS	25483363	25483468	.	-	0	Parent=Os05t0513900-01
Chr05	irgsp1_rep	CDS	25483218	25483279	.	-	2	Parent=Os05t0513900-01
Chr05	irgsp1_rep	CDS	25483010	25483103	.	-	0	Parent=Os05t0513900-01
Chr05	irgsp1_rep	CDS	25482734	25482831	.	-	2	Parent=Os05t0513900-01
Chr05	irgsp1_rep	CDS	25482532	25482633	.	-	0	Parent=Os05t0513900-01
Chr05	irgsp1_rep	CDS	25481461	25481574	.	-	0	Parent=Os05t0513900-01
Chr05	irgsp1_rep	CDS	25477686	25477760	.	-	0	Parent=Os05t0513900-01
Chr05	irgsp1_rep	CDS	25477306	25477401	.	-	0	Parent=Os05t0513900-01
Chr05	irgsp1_rep	three_prime_UTR	25477119	25477305	.	-	.	Parent=Os05t0513900-01
Chr05	irgsp1_rep	mRNA	25477117	25483444	.	-	.	ID=Os05t0513900-02;Name=Os05t0513900-02;Locus_id=Os05g0513900;Note=Similar to Proline iminopeptidase.;Transcript_evidence=AK058234 (DDBJ%2C Best hit);ORF_evidence=B4FQC9 (UniProt);GO=Cellular Component: cytoplasm (GO:0005737),Molecular Function: aminopeptidase activity (GO:0004177);InterPro=Alpha/beta hydrolase fold-1 (IPR000073),Peptidase S33%2C proline iminopeptidase 1 (IPR005944);NIAS_FLcDNA=001-011-C09;TENOR=Os05t0513900-02
Chr05	irgsp1_rep	CDS	25483363	25483444	.	-	0	Parent=Os05t0513900-02
Chr05	irgsp1_rep	CDS	25483218	25483279	.	-	2	Parent=Os05t0513900-02
Chr05	irgsp1_rep	CDS	25483010	25483103	.	-	0	Parent=Os05t0513900-02
Chr05	irgsp1_rep	CDS	25482734	25482831	.	-	2	Parent=Os05t0513900-02
Chr05	irgsp1_rep	CDS	25482532	25482633	.	-	0	Parent=Os05t0513900-02
Chr05	irgsp1_rep	CDS	25481461	25481574	.	-	0	Parent=Os05t0513900-02
Chr05	irgsp1_rep	CDS	25477686	25477760	.	-	0	Parent=Os05t0513900-02
Chr05	irgsp1_rep	CDS	25477306	25477401	.	-	0	Parent=Os05t0513900-02
Chr05	irgsp1_rep	three_prime_UTR	25477117	25477305	.	-	.	Parent=Os05t0513900-02
Chr05	irgsp1_rep	mRNA	25489349	25491319	.	+	.	ID=Os05t0514200-01;Name=Os05t0514200-01;Locus_id=Os05g0514200;CGSNL Gene Symbol=PK4;CGSNL Gene Name=PROTEIN KINASE 4;Oryzabase Gene Symbol Synonym(s)=OsCIPK19%2C OsPK4%2C OsPK04%2C Os-CIPK19%2C CIPK19;Oryzabase Gene Name Synonym(s)=protein kinase 4%2C CBL-interacting protein kinase 19%2C CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 19;Note=OsPK4.;Transcript_evidence=AK069486 (DDBJ%2C Best hit),AK066778 (DDBJ%2C Best hit);ORF_evidence=Q68Y49 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),NAF domain (IPR004041),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),NAF/FISL domain (IPR018451),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023021H04,J013079M07;Oryzabase=7406;Expression=AK069486;TENOR=Os05t0514200-01;KEGG=Os05t0514200-01 (EC:2.7.11.1)
Chr05	irgsp1_rep	five_prime_UTR	25489349	25489428	.	+	.	Parent=Os05t0514200-01
Chr05	irgsp1_rep	CDS	25489429	25490955	.	+	0	Parent=Os05t0514200-01
Chr05	irgsp1_rep	three_prime_UTR	25490956	25491319	.	+	.	Parent=Os05t0514200-01
Chr05	irgsp1_rep	mRNA	25489525	25490887	.	-	.	ID=Os05t0514250-00;Name=Os05t0514250-00;Locus_id=Os05g0514250;Note=Hypothetical protein.;Transcript_evidence=tplb0045a22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0514250-00
Chr05	irgsp1_rep	five_prime_UTR	25490505	25490887	.	-	.	Parent=Os05t0514250-00
Chr05	irgsp1_rep	five_prime_UTR	25490143	25490392	.	-	.	Parent=Os05t0514250-00
Chr05	irgsp1_rep	CDS	25489525	25490142	.	-	0	Parent=Os05t0514250-00
Chr05	irgsp1_rep	mRNA	25497335	25501606	.	+	.	ID=Os05t0514300-01;Name=Os05t0514300-01;Locus_id=Os05g0514300;Oryzabase Gene Symbol Synonym(s)=OsTLP10%2C OsTLP10a%2C OsTLP10b%2C OsTLP9%2C OsFbox267%2C Os_F0560;Oryzabase Gene Name Synonym(s)=tubby-like protein 10%2C tubby-like protein 9%2C F-box protein 267;Note=Similar to Tubby-like protein 3.;Transcript_evidence=AK061747 (DDBJ%2C Best hit);ORF_evidence=Q68Y48 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Tubby%2C C-terminal (IPR000007),F-box domain%2C cyclin-like (IPR001810),Tubby%2C C-terminal%2C conserved site (IPR018066),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=001-038-G02;Oryzabase=14712;Expression=AK061747;TENOR=Os05t0514300-01;KEGG=Os05t0514300-01
Chr05	irgsp1_rep	five_prime_UTR	25497335	25497579	.	+	.	Parent=Os05t0514300-01
Chr05	irgsp1_rep	CDS	25497580	25497924	.	+	0	Parent=Os05t0514300-01
Chr05	irgsp1_rep	CDS	25498462	25498549	.	+	0	Parent=Os05t0514300-01
Chr05	irgsp1_rep	CDS	25499920	25500049	.	+	2	Parent=Os05t0514300-01
Chr05	irgsp1_rep	CDS	25500729	25501284	.	+	1	Parent=Os05t0514300-01
Chr05	irgsp1_rep	three_prime_UTR	25501285	25501606	.	+	.	Parent=Os05t0514300-01
Chr05	irgsp1_rep	mRNA	25497402	25501617	.	+	.	ID=Os05t0514300-02;Name=Os05t0514300-02;Locus_id=Os05g0514300;Oryzabase Gene Symbol Synonym(s)=OsTLP10%2C OsTLP10a%2C OsTLP10b%2C OsTLP9%2C OsFbox267%2C Os_F0560;Oryzabase Gene Name Synonym(s)=tubby-like protein 10%2C tubby-like protein 9%2C F-box protein 267;Note=Similar to Tubby-like protein 3.;Transcript_evidence=AK098851 (DDBJ%2C Best hit);ORF_evidence=Q68Y48 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Tubby%2C C-terminal (IPR000007),F-box domain%2C cyclin-like (IPR001810),Tubby%2C C-terminal%2C conserved site (IPR018066),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013000H08;Oryzabase=14712;Expression=AK098851;TENOR=Os05t0514300-02;KEGG=Os05t0514300-02
Chr05	irgsp1_rep	five_prime_UTR	25497402	25497579	.	+	.	Parent=Os05t0514300-02
Chr05	irgsp1_rep	CDS	25497580	25497924	.	+	0	Parent=Os05t0514300-02
Chr05	irgsp1_rep	CDS	25498462	25498549	.	+	0	Parent=Os05t0514300-02
Chr05	irgsp1_rep	CDS	25499920	25500049	.	+	2	Parent=Os05t0514300-02
Chr05	irgsp1_rep	CDS	25500729	25501284	.	+	1	Parent=Os05t0514300-02
Chr05	irgsp1_rep	three_prime_UTR	25501285	25501617	.	+	.	Parent=Os05t0514300-02
Chr05	irgsp1_rep	mRNA	25503077	25503453	.	-	.	ID=Os05t0514350-01;Name=Os05t0514350-01;Locus_id=Os05g0514350;Note=Non-protein coding transcript.;Transcript_evidence=AK241518 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065170C19;TENOR=Os05t0514350-01
Chr05	irgsp1_rep	exon	25503077	25503453	.	-	.	Parent=Os05t0514350-01
Chr05	irgsp1_rep	mRNA	25503455	25505085	.	-	.	ID=Os05t0514400-00;Name=Os05t0514400-00;Locus_id=Os05g0514400;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q68Y47 (UniProt);InterPro=Protein of unknown function DUF688 (IPR007789);TENOR=Os05t0514400-00;KEGG=Os05t0514400-00
Chr05	irgsp1_rep	CDS	25504180	25505085	.	-	0	Parent=Os05t0514400-00
Chr05	irgsp1_rep	CDS	25503455	25504081	.	-	0	Parent=Os05t0514400-00
Chr05	irgsp1_rep	mRNA	25509034	25510334	.	+	.	ID=Os05t0514500-00;Name=Os05t0514500-00;Locus_id=Os05g0514500;Note=Conserved hypothetical protein.;Transcript_evidence=AK370120 (DDBJ);ORF_evidence=Q68Y46 (UniProt);TENOR=Os05t0514500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	25509034	25509248	.	+	.	Parent=Os05t0514500-00
Chr05	irgsp1_rep	CDS	25509249	25510334	.	+	0	Parent=Os05t0514500-00
Chr05	irgsp1_rep	mRNA	25514447	25516258	.	-	.	ID=Os05t0514600-01;Name=Os05t0514600-01;Locus_id=Os05g0514600;RAP-DB Gene Symbol Synonym(s)=GA2OX4%2C OsGA2ox4%2C ga2ox 4%2C OsGA2ox-4;RAP-DB Gene Name Synonym(s)=GIBBERELLIN 2-OXIDASE 4%2C rice GA 2-oxidase4%2C GA 2-oxidase 4%2C Gibberellin 2-oxidase 4;CGSNL Gene Symbol=SBI;CGSNL Gene Name=SHORTENED BASAL INTERNODES;Oryzabase Gene Symbol Synonym(s)=GA2OX4%2C OsGA2ox4%2C ga2ox 4%2C OsGA2ox-4;Oryzabase Gene Name Synonym(s)=rice GA 2-oxidase4%2C GA 2-oxidase 4%2C Gibberellin 2-oxidase 4;Note=GA 2-oxidase4%2C GA metabolism;Transcript_evidence=AK107211 (Genbank);ORF_evidence=Q0DGS3 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=002-125-C02;Manual Curation=May 19%2C 2009;Literature_PMID=15075394;Oryzabase=5117;Expression=AK107211;TENOR=Os05t0514600-01;KEGG=Os05t0514600-01
Chr05	irgsp1_rep	five_prime_UTR	25516205	25516258	.	-	.	Parent=Os05t0514600-01
Chr05	irgsp1_rep	CDS	25515868	25516204	.	-	0	Parent=Os05t0514600-01
Chr05	irgsp1_rep	CDS	25515053	25515444	.	-	2	Parent=Os05t0514600-01
Chr05	irgsp1_rep	three_prime_UTR	25514447	25515052	.	-	.	Parent=Os05t0514600-01
Chr05	irgsp1_rep	mRNA	25515346	25516204	.	+	.	ID=Os05t0514701-00;Name=Os05t0514701-00;Locus_id=Os05g0514701;Note=Paired box protein%2C N-terminal domain containing protein.;Transcript_evidence=BT038748 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0514701-00;KEGG=Os05t0514701-00
Chr05	irgsp1_rep	five_prime_UTR	25515346	25515555	.	+	.	Parent=Os05t0514701-00
Chr05	irgsp1_rep	CDS	25515556	25516047	.	+	0	Parent=Os05t0514701-00
Chr05	irgsp1_rep	three_prime_UTR	25516048	25516204	.	+	.	Parent=Os05t0514701-00
Chr05	irgsp1_rep	mRNA	25530831	25531070	.	+	.	ID=Os05t0514800-00;Name=Os05t0514800-00;Locus_id=Os05g0514800;Note=Hypothetical conserved gene.;Transcript_evidence=AB332076 (DDBJ%2C Best hit);ORF_evidence=A2Y6H7 (UniProt);TENOR=Os05t0514800-00;KEGG=Os05t0514800-00
Chr05	irgsp1_rep	CDS	25530831	25531070	.	+	0	Parent=Os05t0514800-00
Chr05	irgsp1_rep	mRNA	25543222	25546408	.	+	.	ID=Os05t0515200-01;Name=Os05t0515200-01;Locus_id=Os05g0515200;Note=CytoChrome P450 family protein.;Transcript_evidence=AK062293 (DDBJ%2C Best hit);ORF_evidence=A5LFV4 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=001-100-F01;Expression=AK062293;TENOR=Os05t0515200-01;KEGG=Os05t0515200-01 (EC:1.14.99.9)
Chr05	irgsp1_rep	five_prime_UTR	25543222	25543276	.	+	.	Parent=Os05t0515200-01
Chr05	irgsp1_rep	CDS	25543277	25544194	.	+	0	Parent=Os05t0515200-01
Chr05	irgsp1_rep	CDS	25544280	25544930	.	+	0	Parent=Os05t0515200-01
Chr05	irgsp1_rep	three_prime_UTR	25545639	25546408	.	+	.	Parent=Os05t0515200-01
Chr05	irgsp1_rep	mRNA	25555850	25561791	.	+	.	ID=Os05t0515400-01;Name=Os05t0515400-01;Locus_id=Os05g0515400;CGSNL Gene Symbol=ARF14;CGSNL Gene Name=AUXIN RESPONSE FACTOR 14;Oryzabase Gene Symbol Synonym(s)=OsARF14%2C OsETT4%2C ETT4%2C DLN153%2C OsDLN153;Oryzabase Gene Name Synonym(s)=auxin response factor-14%2C auxin response factor 14%2C OsETTIN4%2C DLN repressor 153%2C DLN motif protein 153;Note=Similar to Auxin response factor 14.;Transcript_evidence=AK067927 (DDBJ%2C Best hit);ORF_evidence=Q0DGS1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: response to hormone stimulus (GO:0009725),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),Auxin response factor (IPR010525),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=J013127F13;Oryzabase=10011;TENOR=Os05t0515400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	25555850	25556175	.	+	.	Parent=Os05t0515400-01
Chr05	irgsp1_rep	CDS	25556176	25556223	.	+	0	Parent=Os05t0515400-01
Chr05	irgsp1_rep	CDS	25556495	25556551	.	+	0	Parent=Os05t0515400-01
Chr05	irgsp1_rep	CDS	25557160	25557345	.	+	0	Parent=Os05t0515400-01
Chr05	irgsp1_rep	CDS	25557455	25557539	.	+	0	Parent=Os05t0515400-01
Chr05	irgsp1_rep	CDS	25558305	25558395	.	+	2	Parent=Os05t0515400-01
Chr05	irgsp1_rep	CDS	25558484	25558648	.	+	1	Parent=Os05t0515400-01
Chr05	irgsp1_rep	CDS	25558895	25559011	.	+	1	Parent=Os05t0515400-01
Chr05	irgsp1_rep	CDS	25559085	25559160	.	+	1	Parent=Os05t0515400-01
Chr05	irgsp1_rep	CDS	25560252	25560414	.	+	0	Parent=Os05t0515400-01
Chr05	irgsp1_rep	CDS	25560496	25561376	.	+	2	Parent=Os05t0515400-01
Chr05	irgsp1_rep	three_prime_UTR	25561377	25561791	.	+	.	Parent=Os05t0515400-01
Chr05	irgsp1_rep	mRNA	25558930	25561582	.	+	.	ID=Os05t0515400-02;Name=Os05t0515400-02;Locus_id=Os05g0515400;CGSNL Gene Symbol=ARF14;CGSNL Gene Name=AUXIN RESPONSE FACTOR 14;Oryzabase Gene Symbol Synonym(s)=OsARF14%2C OsETT4%2C ETT4%2C DLN153%2C OsDLN153;Oryzabase Gene Name Synonym(s)=auxin response factor-14%2C auxin response factor 14%2C OsETTIN4%2C DLN repressor 153%2C DLN motif protein 153;Note=Similar to Auxin response factor 14.;Transcript_evidence=AK058446 (DDBJ%2C Best hit);ORF_evidence=Q0DGS1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: response to hormone stimulus (GO:0009725),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Auxin response factor (IPR010525);NIAS_FLcDNA=001-015-G06;Oryzabase=10011;Expression=AK058446;TENOR=Os05t0515400-02;KEGG=Os05t0515400-02
Chr05	irgsp1_rep	five_prime_UTR	25558930	25558931	.	+	.	Parent=Os05t0515400-02
Chr05	irgsp1_rep	CDS	25558932	25559011	.	+	0	Parent=Os05t0515400-02
Chr05	irgsp1_rep	CDS	25559085	25559160	.	+	1	Parent=Os05t0515400-02
Chr05	irgsp1_rep	CDS	25560252	25560414	.	+	0	Parent=Os05t0515400-02
Chr05	irgsp1_rep	CDS	25560496	25561376	.	+	2	Parent=Os05t0515400-02
Chr05	irgsp1_rep	three_prime_UTR	25561377	25561582	.	+	.	Parent=Os05t0515400-02
Chr05	irgsp1_rep	mRNA	25564517	25566222	.	+	.	ID=Os05t0515500-01;Name=Os05t0515500-01;Locus_id=Os05g0515500;Note=Similar to O-methyltransferase ZRP4 (EC 2.1.1.-) (OMT).;Transcript_evidence=AK068905 (DDBJ%2C Best hit);ORF_evidence=NP_001105689.1 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: O-methyltransferase activity (GO:0008171),Molecular Function: protein dimerization activity (GO:0046983);InterPro=O-methyltransferase%2C family 2 (IPR001077),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Plant methyltransferase dimerisation (IPR012967),O-methyltransferase%2C COMT%2C eukaryota (IPR016461);NIAS_FLcDNA=J023002G03;Expression=AK068905;TENOR=Os05t0515500-01;KEGG=Os05t0515500-01
Chr05	irgsp1_rep	five_prime_UTR	25564517	25564529	.	+	.	Parent=Os05t0515500-01
Chr05	irgsp1_rep	CDS	25564530	25565333	.	+	0	Parent=Os05t0515500-01
Chr05	irgsp1_rep	CDS	25565686	25565985	.	+	0	Parent=Os05t0515500-01
Chr05	irgsp1_rep	three_prime_UTR	25565986	25566222	.	+	.	Parent=Os05t0515500-01
Chr05	irgsp1_rep	mRNA	25569090	25570887	.	-	.	ID=Os05t0515600-01;Name=Os05t0515600-01;Locus_id=Os05g0515600;Oryzabase Gene Symbol Synonym(s)=ZRP4;Oryzabase Gene Name Synonym(s)=O-methyltransferase ZRP4;Note=Similar to O-methyltransferase ZRP4 (EC 2.1.1.-) (OMT).;Transcript_evidence=AK287483 (DDBJ%2C Best hit);ORF_evidence=NP_001148593.1 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: O-methyltransferase activity (GO:0008171),Molecular Function: protein dimerization activity (GO:0046983);InterPro=O-methyltransferase%2C family 2 (IPR001077),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Plant methyltransferase dimerisation (IPR012967),O-methyltransferase%2C COMT%2C eukaryota (IPR016461);NIAS_FLcDNA=J043025M01;Oryzabase=20414;TENOR=Os05t0515600-01;KEGG=Os05t0515600-01
Chr05	irgsp1_rep	five_prime_UTR	25570857	25570887	.	-	.	Parent=Os05t0515600-01
Chr05	irgsp1_rep	CDS	25570044	25570856	.	-	0	Parent=Os05t0515600-01
Chr05	irgsp1_rep	CDS	25569258	25569557	.	-	0	Parent=Os05t0515600-01
Chr05	irgsp1_rep	three_prime_UTR	25569090	25569257	.	-	.	Parent=Os05t0515600-01
Chr05	irgsp1_rep	mRNA	25575639	25579739	.	+	.	ID=Os05t0515700-01;Name=Os05t0515700-01;Locus_id=Os05g0515700;RAP-DB Gene Symbol Synonym(s)=OsVOZ2;RAP-DB Gene Name Synonym(s)=vascular plant one zinc finger protein 2;Oryzabase Gene Symbol Synonym(s)=OsVOZ2;Oryzabase Gene Name Synonym(s)=vascular plant one zinc finger protein 2;Note=Target protein of bacterial effector%2C Xoo virulence;Transcript_evidence=NM_001062576;ORF_evidence=Q0DGR8;NIAS_FLcDNA=J023004H20;Manual Curation=November 24%2C 2015;Literature_PMID=24019919;Oryzabase=14999;Expression=AK069076;TENOR=Os05t0515700-01;KEGG=Os05t0515700-01
Chr05	irgsp1_rep	five_prime_UTR	25575639	25575742	.	+	.	Parent=Os05t0515700-01
Chr05	irgsp1_rep	CDS	25575743	25576006	.	+	0	Parent=Os05t0515700-01
Chr05	irgsp1_rep	CDS	25576094	25576507	.	+	0	Parent=Os05t0515700-01
Chr05	irgsp1_rep	CDS	25578034	25578559	.	+	0	Parent=Os05t0515700-01
Chr05	irgsp1_rep	CDS	25578651	25579372	.	+	2	Parent=Os05t0515700-01
Chr05	irgsp1_rep	three_prime_UTR	25579373	25579739	.	+	.	Parent=Os05t0515700-01
Chr05	irgsp1_rep	mRNA	25582055	25586575	.	+	.	ID=Os05t0515900-01;Name=Os05t0515900-01;Locus_id=Os05g0515900;Note=Similar to heat- and acid-stable phosphoprotein.;Transcript_evidence=AK073259 (DDBJ%2C Best hit);ORF_evidence=NP_001148324.1 (RefSeq);NIAS_FLcDNA=J033026J20;TENOR=Os05t0515900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	25582055	25582125	.	+	.	Parent=Os05t0515900-01
Chr05	irgsp1_rep	CDS	25582126	25582192	.	+	0	Parent=Os05t0515900-01
Chr05	irgsp1_rep	CDS	25583239	25583279	.	+	2	Parent=Os05t0515900-01
Chr05	irgsp1_rep	CDS	25583710	25583814	.	+	0	Parent=Os05t0515900-01
Chr05	irgsp1_rep	CDS	25583924	25584067	.	+	0	Parent=Os05t0515900-01
Chr05	irgsp1_rep	three_prime_UTR	25584068	25584415	.	+	.	Parent=Os05t0515900-01
Chr05	irgsp1_rep	three_prime_UTR	25584874	25584959	.	+	.	Parent=Os05t0515900-01
Chr05	irgsp1_rep	three_prime_UTR	25585841	25585906	.	+	.	Parent=Os05t0515900-01
Chr05	irgsp1_rep	three_prime_UTR	25586248	25586575	.	+	.	Parent=Os05t0515900-01
Chr05	irgsp1_rep	mRNA	25589277	25589836	.	-	.	ID=Os05t0516100-01;Name=Os05t0516100-01;Locus_id=Os05g0516100;Note=Conserved hypothetical protein.;Transcript_evidence=AK107721 (DDBJ%2C Best hit);ORF_evidence=B8AZZ5 (UniProt);NIAS_FLcDNA=002-132-E09;Expression=AK107721;TENOR=Os05t0516100-01;KEGG=Os05t0516100-01
Chr05	irgsp1_rep	five_prime_UTR	25589767	25589836	.	-	.	Parent=Os05t0516100-01
Chr05	irgsp1_rep	CDS	25589407	25589766	.	-	0	Parent=Os05t0516100-01
Chr05	irgsp1_rep	three_prime_UTR	25589277	25589406	.	-	.	Parent=Os05t0516100-01
Chr05	irgsp1_rep	mRNA	25608292	25610823	.	+	.	ID=Os05t0516300-01;Name=Os05t0516300-01;Locus_id=Os05g0516300;Note=Conserved hypothetical protein.;Transcript_evidence=AK067311 (DDBJ%2C Best hit);ORF_evidence=B9FGS5 (UniProt);NIAS_FLcDNA=J013099I21;Expression=AK067311;TENOR=Os05t0516300-01;KEGG=Os05t0516300-01
Chr05	irgsp1_rep	five_prime_UTR	25608292	25608340	.	+	.	Parent=Os05t0516300-01
Chr05	irgsp1_rep	CDS	25608341	25608820	.	+	0	Parent=Os05t0516300-01
Chr05	irgsp1_rep	CDS	25609505	25609507	.	+	0	Parent=Os05t0516300-01
Chr05	irgsp1_rep	three_prime_UTR	25609508	25609573	.	+	.	Parent=Os05t0516300-01
Chr05	irgsp1_rep	three_prime_UTR	25610156	25610212	.	+	.	Parent=Os05t0516300-01
Chr05	irgsp1_rep	three_prime_UTR	25610371	25610823	.	+	.	Parent=Os05t0516300-01
Chr05	irgsp1_rep	mRNA	25613015	25618762	.	+	.	ID=Os05t0516400-01;Name=Os05t0516400-01;Locus_id=Os05g0516400;Note=Similar to Hydroxyproline-rich glycoprotein DZ-HRGP precursor.;Transcript_evidence=AK110196 (DDBJ%2C Best hit);ORF_evidence=Q3LFP8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=002-162-B01;Expression=AK110196;TENOR=Os05t0516400-01;KEGG=Os05t0516400-01
Chr05	irgsp1_rep	five_prime_UTR	25613015	25613139	.	+	.	Parent=Os05t0516400-01
Chr05	irgsp1_rep	CDS	25613140	25613722	.	+	0	Parent=Os05t0516400-01
Chr05	irgsp1_rep	CDS	25613840	25614262	.	+	2	Parent=Os05t0516400-01
Chr05	irgsp1_rep	CDS	25614990	25615484	.	+	2	Parent=Os05t0516400-01
Chr05	irgsp1_rep	CDS	25615808	25615894	.	+	2	Parent=Os05t0516400-01
Chr05	irgsp1_rep	CDS	25615991	25616061	.	+	2	Parent=Os05t0516400-01
Chr05	irgsp1_rep	CDS	25616164	25616240	.	+	0	Parent=Os05t0516400-01
Chr05	irgsp1_rep	CDS	25616502	25616649	.	+	1	Parent=Os05t0516400-01
Chr05	irgsp1_rep	CDS	25617292	25617453	.	+	0	Parent=Os05t0516400-01
Chr05	irgsp1_rep	CDS	25617864	25618301	.	+	0	Parent=Os05t0516400-01
Chr05	irgsp1_rep	three_prime_UTR	25618302	25618762	.	+	.	Parent=Os05t0516400-01
Chr05	irgsp1_rep	mRNA	25613511	25616650	.	-	.	ID=Os05t0516475-00;Name=Os05t0516475-00;Locus_id=Os05g0516475;Note=Hypothetical protein.;Transcript_evidence=tplb0031a15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0516475-00
Chr05	irgsp1_rep	five_prime_UTR	25616503	25616650	.	-	.	Parent=Os05t0516475-00
Chr05	irgsp1_rep	five_prime_UTR	25616117	25616241	.	-	.	Parent=Os05t0516475-00
Chr05	irgsp1_rep	five_prime_UTR	25615824	25615920	.	-	.	Parent=Os05t0516475-00
Chr05	irgsp1_rep	five_prime_UTR	25615149	25615500	.	-	.	Parent=Os05t0516475-00
Chr05	irgsp1_rep	five_prime_UTR	25614165	25614429	.	-	.	Parent=Os05t0516475-00
Chr05	irgsp1_rep	CDS	25613511	25614164	.	-	0	Parent=Os05t0516475-00
Chr05	irgsp1_rep	mRNA	25617065	25618389	.	-	.	ID=Os05t0516550-01;Name=Os05t0516550-01;Locus_id=Os05g0516550;Note=Hypothetical gene.;Transcript_evidence=AK068854 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013170J18;Expression=AK068854;TENOR=Os05t0516550-01;KEGG=Os05t0516550-01
Chr05	irgsp1_rep	CDS	25618159	25618389	.	-	0	Parent=Os05t0516550-01
Chr05	irgsp1_rep	three_prime_UTR	25617065	25618158	.	-	.	Parent=Os05t0516550-01
Chr05	irgsp1_rep	mRNA	25620555	25623280	.	+	.	ID=Os05t0516600-01;Name=Os05t0516600-01;Locus_id=Os05g0516600;RAP-DB Gene Symbol Synonym(s)=OsRab7%2C OsRab7B3;Oryzabase Gene Symbol Synonym(s)=OsRab7B3%2C Rab7B3%2C OsRab7%2C Rab7;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab7B3%2C GTP-binding protein OsRab7;Note=Small GTP-binding protein%2C Tolerance to salt stress%2C Tolerance to drought and heat stress%2C Leaf senescence;Transcript_evidence=AK112031,AK111896;ORF_evidence=Q75IJ1;GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),Small GTPase (IPR001806),Small GTP-binding protein domain (IPR005225);NIAS_FLcDNA=001-040-A09,J013021E23;Manual Curation=July 16%2C 2020;Literature_PMID=30658457,24688390,22785493;Oryzabase=11090;Expression=AK112031;TENOR=Os05t0516600-01;KEGG=Os05t0516600-01
Chr05	irgsp1_rep	five_prime_UTR	25620555	25620682	.	+	.	Parent=Os05t0516600-01
Chr05	irgsp1_rep	CDS	25620683	25620735	.	+	0	Parent=Os05t0516600-01
Chr05	irgsp1_rep	CDS	25620838	25620864	.	+	1	Parent=Os05t0516600-01
Chr05	irgsp1_rep	CDS	25620993	25621092	.	+	1	Parent=Os05t0516600-01
Chr05	irgsp1_rep	CDS	25622054	25622200	.	+	0	Parent=Os05t0516600-01
Chr05	irgsp1_rep	CDS	25622271	25622351	.	+	0	Parent=Os05t0516600-01
Chr05	irgsp1_rep	CDS	25622459	25622604	.	+	0	Parent=Os05t0516600-01
Chr05	irgsp1_rep	CDS	25622918	25622984	.	+	1	Parent=Os05t0516600-01
Chr05	irgsp1_rep	three_prime_UTR	25622985	25623280	.	+	.	Parent=Os05t0516600-01
Chr05	irgsp1_rep	mRNA	25624026	25624868	.	+	.	ID=Os05t0516700-01;Name=Os05t0516700-01;Locus_id=Os05g0516700;Note=Conserved hypothetical protein.;Transcript_evidence=AK109131 (DDBJ%2C Best hit);ORF_evidence=B9FGS6 (UniProt);NIAS_FLcDNA=002-155-D10;Expression=AK109131;TENOR=Os05t0516700-01;KEGG=Os05t0516700-01
Chr05	irgsp1_rep	five_prime_UTR	25624026	25624071	.	+	.	Parent=Os05t0516700-01
Chr05	irgsp1_rep	CDS	25624072	25624614	.	+	0	Parent=Os05t0516700-01
Chr05	irgsp1_rep	three_prime_UTR	25624615	25624868	.	+	.	Parent=Os05t0516700-01
Chr05	irgsp1_rep	mRNA	25625109	25627147	.	-	.	ID=Os05t0516800-01;Name=Os05t0516800-01;Locus_id=Os05g0516800;Oryzabase Gene Symbol Synonym(s)=OsRab11D3;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab11D3;Note=Similar to Ras-related protein RIC2.;Transcript_evidence=AK061969 (DDBJ%2C Best hit);ORF_evidence=B6T0Y1 (UniProt);GO=Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225);NIAS_FLcDNA=001-042-H05;Oryzabase=11104;Expression=AK061969;TENOR=Os05t0516800-01;KEGG=Os05t0516800-01
Chr05	irgsp1_rep	five_prime_UTR	25627096	25627147	.	-	.	Parent=Os05t0516800-01
Chr05	irgsp1_rep	CDS	25626863	25627095	.	-	0	Parent=Os05t0516800-01
Chr05	irgsp1_rep	CDS	25625362	25625791	.	-	1	Parent=Os05t0516800-01
Chr05	irgsp1_rep	three_prime_UTR	25625109	25625361	.	-	.	Parent=Os05t0516800-01
Chr05	irgsp1_rep	mRNA	25625463	25627070	.	+	.	ID=Os05t0516850-00;Name=Os05t0516850-00;Locus_id=Os05g0516850;Note=Hypothetical gene.;Transcript_evidence=BT084300 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0516850-00;KEGG=Os05t0516850-00
Chr05	irgsp1_rep	five_prime_UTR	25625463	25625744	.	+	.	Parent=Os05t0516850-00
Chr05	irgsp1_rep	CDS	25625745	25625776	.	+	0	Parent=Os05t0516850-00
Chr05	irgsp1_rep	CDS	25626844	25627051	.	+	1	Parent=Os05t0516850-00
Chr05	irgsp1_rep	three_prime_UTR	25627052	25627070	.	+	.	Parent=Os05t0516850-00
Chr05	irgsp1_rep	mRNA	25629221	25635032	.	+	.	ID=Os05t0516900-01;Name=Os05t0516900-01;Locus_id=Os05g0516900;Note=Protein of unknown function DUF300 family protein.;Transcript_evidence=AK069607 (DDBJ%2C Best hit);ORF_evidence=O80656 (UniProt);InterPro=Protein of unknown function DUF300 (IPR005178);NIAS_FLcDNA=J023025A15;Expression=AK069607;TENOR=Os05t0516900-01;KEGG=Os05t0516900-01
Chr05	irgsp1_rep	five_prime_UTR	25629221	25629343	.	+	.	Parent=Os05t0516900-01
Chr05	irgsp1_rep	five_prime_UTR	25631047	25631240	.	+	.	Parent=Os05t0516900-01
Chr05	irgsp1_rep	CDS	25631241	25631456	.	+	0	Parent=Os05t0516900-01
Chr05	irgsp1_rep	CDS	25631598	25631654	.	+	0	Parent=Os05t0516900-01
Chr05	irgsp1_rep	CDS	25632140	25632248	.	+	0	Parent=Os05t0516900-01
Chr05	irgsp1_rep	CDS	25632641	25632825	.	+	2	Parent=Os05t0516900-01
Chr05	irgsp1_rep	CDS	25632907	25632995	.	+	0	Parent=Os05t0516900-01
Chr05	irgsp1_rep	CDS	25633189	25633444	.	+	1	Parent=Os05t0516900-01
Chr05	irgsp1_rep	CDS	25633935	25634177	.	+	0	Parent=Os05t0516900-01
Chr05	irgsp1_rep	CDS	25634267	25634578	.	+	0	Parent=Os05t0516900-01
Chr05	irgsp1_rep	three_prime_UTR	25634579	25635032	.	+	.	Parent=Os05t0516900-01
Chr05	irgsp1_rep	mRNA	25635922	25636912	.	-	.	ID=Os05t0517100-00;Name=Os05t0517100-00;Locus_id=Os05g0517100;Oryzabase Gene Symbol Synonym(s)=OsOFP25%2C OsOFP23;Oryzabase Gene Name Synonym(s)=OVATE family protein 25%2C ovate family protein 23%2C OVATE-domain containing protein 23;Note=Hypothetical conserved gene.;Transcript_evidence=BT066510 (DDBJ);ORF_evidence=NP_172174.1 (RefSeq);InterPro=Domain of unknown function DUF623 (IPR006458);Oryzabase=18321;TENOR=Os05t0517100-00;KEGG=Os05t0517100-00
Chr05	irgsp1_rep	CDS	25635962	25636912	.	-	0	Parent=Os05t0517100-00
Chr05	irgsp1_rep	three_prime_UTR	25635922	25635961	.	-	.	Parent=Os05t0517100-00
Chr05	irgsp1_rep	mRNA	25641597	25646402	.	+	.	ID=Os05t0517200-01;Name=Os05t0517200-01;Locus_id=Os05g0517200;CGSNL Gene Symbol=TPS6;CGSNL Gene Name=TREHALOSE-6-PHOSPHATE SYNTHASE 6;Oryzabase Gene Symbol Synonym(s)=OsTPS6;Note=HAD-superfamily hydrolase subfamily IIB protein.;Transcript_evidence=AK072066 (DDBJ%2C Best hit);ORF_evidence=B2ZAS1 (UniProt);GO=Biological Process: trehalose biosynthetic process (GO:0005992),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Glycosyl transferase%2C family 20 (IPR001830),Trehalose-phosphatase (IPR003337),HAD-superfamily hydrolase%2C subfamily IIB (IPR006379),HAD-like domain (IPR023214);NIAS_FLcDNA=J013110H22;Oryzabase=9045;Expression=AK072066;TENOR=Os05t0517200-01;KEGG=Os05t0517200-01
Chr05	irgsp1_rep	five_prime_UTR	25641597	25641768	.	+	.	Parent=Os05t0517200-01
Chr05	irgsp1_rep	CDS	25641769	25643816	.	+	0	Parent=Os05t0517200-01
Chr05	irgsp1_rep	CDS	25644575	25644848	.	+	1	Parent=Os05t0517200-01
Chr05	irgsp1_rep	CDS	25645403	25645780	.	+	0	Parent=Os05t0517200-01
Chr05	irgsp1_rep	three_prime_UTR	25645781	25646402	.	+	.	Parent=Os05t0517200-01
Chr05	irgsp1_rep	mRNA	25650706	25652237	.	+	.	ID=Os05t0517400-01;Name=Os05t0517400-01;Locus_id=Os05g0517400;Note=Conserved hypothetical protein.;Transcript_evidence=AK106780 (DDBJ%2C Best hit);ORF_evidence=B9FGS9 (UniProt);NIAS_FLcDNA=002-115-H04;Expression=AK106780;TENOR=Os05t0517400-01;KEGG=Os05t0517400-01
Chr05	irgsp1_rep	five_prime_UTR	25650706	25650782	.	+	.	Parent=Os05t0517400-01
Chr05	irgsp1_rep	CDS	25650783	25651135	.	+	0	Parent=Os05t0517400-01
Chr05	irgsp1_rep	CDS	25651765	25651825	.	+	1	Parent=Os05t0517400-01
Chr05	irgsp1_rep	three_prime_UTR	25651826	25651853	.	+	.	Parent=Os05t0517400-01
Chr05	irgsp1_rep	three_prime_UTR	25651933	25652237	.	+	.	Parent=Os05t0517400-01
Chr05	irgsp1_rep	mRNA	25653298	25657664	.	-	.	ID=Os05t0517500-01;Name=Os05t0517500-01;Locus_id=Os05g0517500;Note=Similar to Gamma-glutamyl hydrolase precursor (EC 3.4.19.9) (Gamma-Glu-X carboxypeptidase) (Conjugase) (GH).;Transcript_evidence=AK065245 (DDBJ%2C Best hit);ORF_evidence=B6UBJ6 (UniProt);GO=Biological Process: glutamine metabolic process (GO:0006541),Molecular Function: catalytic activity (GO:0003824),Molecular Function: omega peptidase activity (GO:0008242),Molecular Function: hydrolase activity (GO:0016787);InterPro=Peptidase C26 (IPR011697),Peptidase C26%2C gamma-glutamyl hydrolase (IPR015527);NIAS_FLcDNA=J013002I17;Expression=AK065245;TENOR=Os05t0517500-01;KEGG=Os05t0517500-01 (EC:3.4.19.9)
Chr05	irgsp1_rep	five_prime_UTR	25657616	25657664	.	-	.	Parent=Os05t0517500-01
Chr05	irgsp1_rep	CDS	25657304	25657615	.	-	0	Parent=Os05t0517500-01
Chr05	irgsp1_rep	CDS	25656448	25656534	.	-	0	Parent=Os05t0517500-01
Chr05	irgsp1_rep	CDS	25656173	25656262	.	-	0	Parent=Os05t0517500-01
Chr05	irgsp1_rep	CDS	25655811	25655905	.	-	0	Parent=Os05t0517500-01
Chr05	irgsp1_rep	CDS	25655516	25655576	.	-	1	Parent=Os05t0517500-01
Chr05	irgsp1_rep	CDS	25655247	25655336	.	-	0	Parent=Os05t0517500-01
Chr05	irgsp1_rep	CDS	25654915	25654977	.	-	0	Parent=Os05t0517500-01
Chr05	irgsp1_rep	CDS	25654423	25654511	.	-	0	Parent=Os05t0517500-01
Chr05	irgsp1_rep	CDS	25653681	25653773	.	-	1	Parent=Os05t0517500-01
Chr05	irgsp1_rep	CDS	25653561	25653594	.	-	1	Parent=Os05t0517500-01
Chr05	irgsp1_rep	three_prime_UTR	25653298	25653560	.	-	.	Parent=Os05t0517500-01
Chr05	irgsp1_rep	mRNA	25653371	25655907	.	-	.	ID=Os05t0517500-02;Name=Os05t0517500-02;Locus_id=Os05g0517500;Note=Similar to Gamma-glutamyl hydrolase.;Transcript_evidence=AK062148 (DDBJ%2C Best hit);ORF_evidence=B6UBJ6 (UniProt);GO=Biological Process: glutamine metabolic process (GO:0006541),Molecular Function: catalytic activity (GO:0003824),Molecular Function: omega peptidase activity (GO:0008242),Molecular Function: hydrolase activity (GO:0016787);InterPro=Peptidase C26 (IPR011697),Peptidase C26%2C gamma-glutamyl hydrolase (IPR015527);NIAS_FLcDNA=001-045-H02;Expression=AK062148;TENOR=Os05t0517500-02;KEGG=Os05t0517500-02 (EC:3.4.19.9)
Chr05	irgsp1_rep	five_prime_UTR	25655906	25655907	.	-	.	Parent=Os05t0517500-02
Chr05	irgsp1_rep	CDS	25655811	25655905	.	-	0	Parent=Os05t0517500-02
Chr05	irgsp1_rep	CDS	25655516	25655576	.	-	1	Parent=Os05t0517500-02
Chr05	irgsp1_rep	CDS	25655247	25655336	.	-	0	Parent=Os05t0517500-02
Chr05	irgsp1_rep	CDS	25654915	25654977	.	-	0	Parent=Os05t0517500-02
Chr05	irgsp1_rep	CDS	25654423	25654511	.	-	0	Parent=Os05t0517500-02
Chr05	irgsp1_rep	CDS	25653681	25653773	.	-	1	Parent=Os05t0517500-02
Chr05	irgsp1_rep	CDS	25653561	25653594	.	-	1	Parent=Os05t0517500-02
Chr05	irgsp1_rep	three_prime_UTR	25653371	25653560	.	-	.	Parent=Os05t0517500-02
Chr05	irgsp1_rep	mRNA	25658917	25660044	.	-	.	ID=Os05t0517600-00;Name=Os05t0517600-00;Locus_id=Os05g0517600;CGSNL Gene Symbol=Hb5;CGSNL Gene Name=HEMOGLOBIN 5;Oryzabase Gene Symbol Synonym(s)=OsHB5%2C HB5%2C OsPgb1.5%2C Pgb1.5;Oryzabase Gene Name Synonym(s)=non-symbiotic hemoglobin 5%2C Phytogb1.5%2C phytoglobin 1.5;Note=Similar to Symbiotic-like hemoglobin 5.;Transcript_evidence=ab initio prediction;ORF_evidence=A3EX90 (UniProt);GO=Biological Process: oxygen transport (GO:0015671),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxygen binding (GO:0019825),Molecular Function: heme binding (GO:0020037);InterPro=Globin%2C subset (IPR000971),Leghaemoglobin (IPR001032),Globin-like (IPR009050),Globin%2C structural domain (IPR012292);Oryzabase=12416;TENOR=Os05t0517600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	25659950	25660044	.	-	0	Parent=Os05t0517600-00
Chr05	irgsp1_rep	CDS	25659596	25659683	.	-	1	Parent=Os05t0517600-00
Chr05	irgsp1_rep	CDS	25659354	25659470	.	-	0	Parent=Os05t0517600-00
Chr05	irgsp1_rep	CDS	25658917	25659054	.	-	0	Parent=Os05t0517600-00
Chr05	irgsp1_rep	mRNA	25663054	25665464	.	+	.	ID=Os05t0517800-00;Name=Os05t0517800-00;Locus_id=Os05g0517800;Note=Conserved hypothetical protein.;Transcript_evidence=EU959047 (DDBJ);ORF_evidence=NP_001056054.1 (RefSeq);TENOR=Os05t0517800-00;KEGG=Os05t0517800-00
Chr05	irgsp1_rep	five_prime_UTR	25663054	25663113	.	+	.	Parent=Os05t0517800-00
Chr05	irgsp1_rep	CDS	25663114	25663265	.	+	0	Parent=Os05t0517800-00
Chr05	irgsp1_rep	CDS	25665249	25665330	.	+	1	Parent=Os05t0517800-00
Chr05	irgsp1_rep	three_prime_UTR	25665331	25665464	.	+	.	Parent=Os05t0517800-00
Chr05	irgsp1_rep	mRNA	25666154	25667298	.	+	.	ID=Os05t0517900-01;Name=Os05t0517900-01;Locus_id=Os05g0517900;Note=2 %2C 3 cyclic phosphodiesterase%2C plant domain containing protein.;Transcript_evidence=AK243412 (DDBJ%2C Best hit);ORF_evidence=NP_001151923.1 (RefSeq);GO=Biological Process: RNA metabolic process (GO:0016070),Cellular Component: intracellular (GO:0005622),Molecular Function: catalytic activity (GO:0003824),Molecular Function: cyclic-nucleotide phosphodiesterase activity (GO:0004112);InterPro=RNA ligase/cyclic nucleotide phosphodiesterase (IPR009097),2&apos%3B%2C3&apos%3B-cyclic-nucleotide 3&apos%3B-phosphodiesterase (IPR012386);NIAS_FLcDNA=J100065O17;TENOR=Os05t0517900-01;KEGG=Os05t0517900-01
Chr05	irgsp1_rep	five_prime_UTR	25666154	25666236	.	+	.	Parent=Os05t0517900-01
Chr05	irgsp1_rep	CDS	25666237	25666533	.	+	0	Parent=Os05t0517900-01
Chr05	irgsp1_rep	CDS	25666736	25666790	.	+	0	Parent=Os05t0517900-01
Chr05	irgsp1_rep	CDS	25666881	25667086	.	+	2	Parent=Os05t0517900-01
Chr05	irgsp1_rep	three_prime_UTR	25667087	25667298	.	+	.	Parent=Os05t0517900-01
Chr05	irgsp1_rep	mRNA	25667364	25669371	.	-	.	ID=Os05t0518000-01;Name=Os05t0518000-01;Locus_id=Os05g0518000;RAP-DB Gene Symbol Synonym(s)=OsFTL10;RAP-DB Gene Name Synonym(s)=Flowering Locus T-like 10;CGSNL Gene Symbol=FTL10;CGSNL Gene Name=FLOWERING TIME LIKE GENE 10;Oryzabase Gene Symbol Synonym(s)=OsFTL10;Oryzabase Gene Name Synonym(s)=FT-like gene 10%2C Flowering Locus T-like 10;Note=Homolog of Hd3a%2C Promotion of flowering%2C Drought tolerance;Transcript_evidence=EU241924;ORF_evidence=A0A0N7KL34;InterPro=PEBP-like superfamily (IPR036610),Phosphatidylethanolamine-binding protein (IPR008914),Phosphatidylethanolamine-binding protein%2C eukaryotic (IPR035810),Phosphatidylethanolamine-binding%2C conserved site (IPR001858);Manual Curation=February 22%2C 2019;Literature_PMID=30783573;Oryzabase=11231;TENOR=Os05t0518000-00;KEGG=Os05t0518000-00;Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737)
Chr05	irgsp1_rep	five_prime_UTR	25669370	25669371	.	-	.	Parent=Os05t0518000-01
Chr05	irgsp1_rep	CDS	25669184	25669369	.	-	0	Parent=Os05t0518000-01
Chr05	irgsp1_rep	CDS	25668904	25668965	.	-	0	Parent=Os05t0518000-01
Chr05	irgsp1_rep	CDS	25668705	25668745	.	-	1	Parent=Os05t0518000-01
Chr05	irgsp1_rep	CDS	25667455	25667690	.	-	2	Parent=Os05t0518000-01
Chr05	irgsp1_rep	three_prime_UTR	25667364	25667454	.	-	.	Parent=Os05t0518000-01
Chr05	irgsp1_rep	mRNA	25675551	25679840	.	-	.	ID=Os05t0518101-01;Name=Os05t0518101-01;Locus_id=Os05g0518101;Note=Hypothetical gene.;Transcript_evidence=AK288897 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090080G08;TENOR=Os05t0518101-01;KEGG=Os05t0518101-01
Chr05	irgsp1_rep	five_prime_UTR	25678023	25679840	.	-	.	Parent=Os05t0518101-01
Chr05	irgsp1_rep	CDS	25677570	25678022	.	-	0	Parent=Os05t0518101-01
Chr05	irgsp1_rep	three_prime_UTR	25675551	25677569	.	-	.	Parent=Os05t0518101-01
Chr05	irgsp1_rep	mRNA	25677594	25682489	.	+	.	ID=Os05t0518200-01;Name=Os05t0518200-01;Locus_id=Os05g0518200;Note=Conserved hypothetical protein.;Transcript_evidence=AK107178 (DDBJ%2C Best hit);ORF_evidence=A2Y6K3 (UniProt);NIAS_FLcDNA=002-124-G11;Expression=AK107178;TENOR=Os05t0518200-01;KEGG=Os05t0518200-01
Chr05	irgsp1_rep	five_prime_UTR	25677594	25677678	.	+	.	Parent=Os05t0518200-01
Chr05	irgsp1_rep	CDS	25677679	25677710	.	+	0	Parent=Os05t0518200-01
Chr05	irgsp1_rep	CDS	25677828	25678203	.	+	1	Parent=Os05t0518200-01
Chr05	irgsp1_rep	CDS	25679381	25682140	.	+	0	Parent=Os05t0518200-01
Chr05	irgsp1_rep	three_prime_UTR	25682141	25682489	.	+	.	Parent=Os05t0518200-01
Chr05	irgsp1_rep	mRNA	25682955	25685052	.	-	.	ID=Os05t0518300-01;Name=Os05t0518300-01;Locus_id=Os05g0518300;CGSNL Gene Symbol=GELP73;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 73;Oryzabase Gene Symbol Synonym(s)=OsGELP73;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 73;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK061147 (DDBJ%2C Best hit);ORF_evidence=NP_001149080.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087),Esterase%2C SGNH hydrolase-type%2C subgroup (IPR013831);NIAS_FLcDNA=006-208-D08;Oryzabase=11023;Expression=AK061147;TENOR=Os05t0518300-01;KEGG=Os05t0518300-01
Chr05	irgsp1_rep	five_prime_UTR	25684989	25685052	.	-	.	Parent=Os05t0518300-01
Chr05	irgsp1_rep	CDS	25684739	25684988	.	-	0	Parent=Os05t0518300-01
Chr05	irgsp1_rep	CDS	25683782	25684405	.	-	2	Parent=Os05t0518300-01
Chr05	irgsp1_rep	CDS	25683108	25683331	.	-	2	Parent=Os05t0518300-01
Chr05	irgsp1_rep	three_prime_UTR	25682955	25683107	.	-	.	Parent=Os05t0518300-01
Chr05	irgsp1_rep	mRNA	25714880	25722087	.	+	.	ID=Os05t0518600-01;Name=Os05t0518600-01;Locus_id=Os05g0518600;CGSNL Gene Symbol=TPS1;CGSNL Gene Name=TREHALOSE-6-PHOSPHATE SYNTHASE 1;Oryzabase Gene Symbol Synonym(s)=OsTPS1;Note=Similar to SL-TPS/P.;Transcript_evidence=AK067066 (DDBJ%2C Best hit);ORF_evidence=B6DT12 (UniProt);GO=Biological Process: trehalose biosynthetic process (GO:0005992),Molecular Function: catalytic activity (GO:0003824);InterPro=Glycosyl transferase%2C family 20 (IPR001830);NIAS_FLcDNA=J013093P17;Oryzabase=9040;Expression=AK067066;TENOR=Os05t0518600-01;KEGG=Os05t0518600-01 (EC:2.4.1.15)
Chr05	irgsp1_rep	five_prime_UTR	25714880	25714881	.	+	.	Parent=Os05t0518600-01
Chr05	irgsp1_rep	CDS	25714882	25715081	.	+	0	Parent=Os05t0518600-01
Chr05	irgsp1_rep	CDS	25715783	25715897	.	+	1	Parent=Os05t0518600-01
Chr05	irgsp1_rep	CDS	25716114	25716215	.	+	0	Parent=Os05t0518600-01
Chr05	irgsp1_rep	CDS	25716882	25717118	.	+	0	Parent=Os05t0518600-01
Chr05	irgsp1_rep	CDS	25717460	25717504	.	+	0	Parent=Os05t0518600-01
Chr05	irgsp1_rep	three_prime_UTR	25717505	25717548	.	+	.	Parent=Os05t0518600-01
Chr05	irgsp1_rep	three_prime_UTR	25717816	25717864	.	+	.	Parent=Os05t0518600-01
Chr05	irgsp1_rep	three_prime_UTR	25718021	25718121	.	+	.	Parent=Os05t0518600-01
Chr05	irgsp1_rep	three_prime_UTR	25718227	25718414	.	+	.	Parent=Os05t0518600-01
Chr05	irgsp1_rep	three_prime_UTR	25718583	25718700	.	+	.	Parent=Os05t0518600-01
Chr05	irgsp1_rep	three_prime_UTR	25719198	25719377	.	+	.	Parent=Os05t0518600-01
Chr05	irgsp1_rep	three_prime_UTR	25719470	25719592	.	+	.	Parent=Os05t0518600-01
Chr05	irgsp1_rep	three_prime_UTR	25719666	25719753	.	+	.	Parent=Os05t0518600-01
Chr05	irgsp1_rep	three_prime_UTR	25719847	25719977	.	+	.	Parent=Os05t0518600-01
Chr05	irgsp1_rep	three_prime_UTR	25720066	25720164	.	+	.	Parent=Os05t0518600-01
Chr05	irgsp1_rep	three_prime_UTR	25721120	25722087	.	+	.	Parent=Os05t0518600-01
Chr05	irgsp1_rep	mRNA	25713833	25721551	.	+	.	ID=Os05t0518600-02;Name=Os05t0518600-02;Locus_id=Os05g0518600;RAP-DB Gene Symbol Synonym(s)=OsTPS1;RAP-DB Gene Name Synonym(s)=trehalose-6-phosphate synthase 1;CGSNL Gene Symbol=TPS1;CGSNL Gene Name=TREHALOSE-6-PHOSPHATE SYNTHASE 1;Oryzabase Gene Symbol Synonym(s)=OsTPS1;Note=Trehalose-6-phosphate synthase%2C Abiotic stress tolerance;Transcript_evidence=HM050424 (indica);ORF_evidence=H6ST13 (indica);GO=Biological Process: trehalose biosynthetic process (GO:0005992),Molecular Function: catalytic activity (GO:0003824),Molecular Function: alpha%2Calpha-trehalose-phosphate synthase (UDP-forming) activity (GO:0003825);InterPro=HAD-like superfamily (IPR036412),HAD superfamily (IPR023214),Trehalose-phosphatase (IPR003337),Glycosyl transferase%2C family 20 (IPR001830),Alpha%2Calpha-trehalose-phosphate synthase (IPR012766);Manual Curation=November 9%2C 2018;Literature_PMID=21698458,21598083;Oryzabase=9040
Chr05	irgsp1_rep	CDS	25713833	25714322	.	+	0	Parent=Os05t0518600-02
Chr05	irgsp1_rep	CDS	25714437	25714534	.	+	2	Parent=Os05t0518600-02
Chr05	irgsp1_rep	CDS	25714693	25715081	.	+	0	Parent=Os05t0518600-02
Chr05	irgsp1_rep	CDS	25715783	25715897	.	+	1	Parent=Os05t0518600-02
Chr05	irgsp1_rep	CDS	25716114	25716215	.	+	0	Parent=Os05t0518600-02
Chr05	irgsp1_rep	CDS	25716882	25717032	.	+	0	Parent=Os05t0518600-02
Chr05	irgsp1_rep	CDS	25717460	25717548	.	+	2	Parent=Os05t0518600-02
Chr05	irgsp1_rep	CDS	25717816	25717864	.	+	0	Parent=Os05t0518600-02
Chr05	irgsp1_rep	CDS	25718021	25718121	.	+	2	Parent=Os05t0518600-02
Chr05	irgsp1_rep	CDS	25718227	25718414	.	+	0	Parent=Os05t0518600-02
Chr05	irgsp1_rep	CDS	25718583	25718700	.	+	1	Parent=Os05t0518600-02
Chr05	irgsp1_rep	CDS	25719198	25719377	.	+	0	Parent=Os05t0518600-02
Chr05	irgsp1_rep	CDS	25719470	25719592	.	+	0	Parent=Os05t0518600-02
Chr05	irgsp1_rep	CDS	25719666	25719753	.	+	0	Parent=Os05t0518600-02
Chr05	irgsp1_rep	CDS	25719847	25719977	.	+	2	Parent=Os05t0518600-02
Chr05	irgsp1_rep	CDS	25720066	25720164	.	+	0	Parent=Os05t0518600-02
Chr05	irgsp1_rep	CDS	25721120	25721551	.	+	0	Parent=Os05t0518600-02
Chr05	irgsp1_rep	mRNA	25748561	25749329	.	-	.	ID=Os05t0518750-01;Name=Os05t0518750-01;Locus_id=Os05g0518750;Note=Hypothetical gene.;Transcript_evidence=AK241425 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065161M05;TENOR=Os05t0518750-01
Chr05	irgsp1_rep	five_prime_UTR	25748941	25749329	.	-	.	Parent=Os05t0518750-01
Chr05	irgsp1_rep	CDS	25748561	25748940	.	-	0	Parent=Os05t0518750-01
Chr05	irgsp1_rep	mRNA	25748506	25749014	.	+	.	ID=Os05t0518800-01;Name=Os05t0518800-01;Locus_id=Os05g0518800;RAP-DB Gene Symbol Synonym(s)=OsS40-2;RAP-DB Gene Name Synonym(s)=S40 protein 2;CGSNL Gene Symbol=S40-2;CGSNL Gene Name=S40 PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsS40-2;Oryzabase Gene Name Synonym(s)=S40 protein 2;Note=A member of S40 gene family%2C Leaf senescence%2C "Regulation of crosstalk among abiotic%2C biotic and developmental senescence";Transcript_evidence=AK365519 (barley);ORF_evidence=Q0DGQ0;InterPro=Senescence regulator S40 (IPR007608);Manual Curation=November 8%2C 2019;Literature_PMID=31046677;Oryzabase=22072;TENOR=Os05t0518800-00
Chr05	irgsp1_rep	five_prime_UTR	25748506	25748569	.	+	.	Parent=Os05t0518800-01
Chr05	irgsp1_rep	CDS	25748570	25748962	.	+	0	Parent=Os05t0518800-01
Chr05	irgsp1_rep	three_prime_UTR	25748963	25749014	.	+	.	Parent=Os05t0518800-01
Chr05	irgsp1_rep	mRNA	25760389	25761404	.	+	.	ID=Os05t0519000-00;Name=Os05t0519000-00;Locus_id=Os05g0519000;Oryzabase Gene Symbol Synonym(s)=OsVQ21;Oryzabase Gene Name Synonym(s)=VQ motif-containing protein 21;Note=VQ domain containing protein.;Transcript_evidence=CT837568 (DDBJ%2C Best hit);ORF_evidence=NP_001151287.1 (RefSeq);InterPro=VQ (IPR008889);Oryzabase=13637;TENOR=Os05t0519000-00;KEGG=Os05t0519000-00
Chr05	irgsp1_rep	five_prime_UTR	25760389	25760410	.	+	.	Parent=Os05t0519000-00
Chr05	irgsp1_rep	CDS	25760411	25761223	.	+	0	Parent=Os05t0519000-00
Chr05	irgsp1_rep	three_prime_UTR	25761224	25761404	.	+	.	Parent=Os05t0519000-00
Chr05	irgsp1_rep	mRNA	25771794	25775892	.	+	.	ID=Os05t0519200-01;Name=Os05t0519200-01;Locus_id=Os05g0519200;Note=Similar to protein kinase.;Transcript_evidence=AK068419 (DDBJ%2C Best hit);ORF_evidence=NP_001147952.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013153L22;Expression=AK068419;TENOR=Os05t0519200-01;KEGG=Os05t0519200-01
Chr05	irgsp1_rep	five_prime_UTR	25771794	25772827	.	+	.	Parent=Os05t0519200-01
Chr05	irgsp1_rep	CDS	25772828	25773925	.	+	0	Parent=Os05t0519200-01
Chr05	irgsp1_rep	three_prime_UTR	25773926	25774931	.	+	.	Parent=Os05t0519200-01
Chr05	irgsp1_rep	three_prime_UTR	25775463	25775892	.	+	.	Parent=Os05t0519200-01
Chr05	irgsp1_rep	mRNA	25771992	25775926	.	+	.	ID=Os05t0519200-02;Name=Os05t0519200-02;Locus_id=Os05g0519200;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK067065 (DDBJ%2C Best hit);ORF_evidence=NP_001147952.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013091D22;Expression=AK067065;TENOR=Os05t0519200-02;KEGG=Os05t0519200-02
Chr05	irgsp1_rep	five_prime_UTR	25771992	25772060	.	+	.	Parent=Os05t0519200-02
Chr05	irgsp1_rep	five_prime_UTR	25772555	25772827	.	+	.	Parent=Os05t0519200-02
Chr05	irgsp1_rep	CDS	25772828	25773901	.	+	0	Parent=Os05t0519200-02
Chr05	irgsp1_rep	CDS	25774476	25774931	.	+	0	Parent=Os05t0519200-02
Chr05	irgsp1_rep	CDS	25775463	25775747	.	+	0	Parent=Os05t0519200-02
Chr05	irgsp1_rep	three_prime_UTR	25775748	25775926	.	+	.	Parent=Os05t0519200-02
Chr05	irgsp1_rep	mRNA	25772543	25775873	.	+	.	ID=Os05t0519200-03;Name=Os05t0519200-03;Locus_id=Os05g0519200;Note=Similar to protein kinase.;Transcript_evidence=AK100493 (DDBJ%2C Best hit);ORF_evidence=NP_001147952.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023098L24;Expression=AK100493;TENOR=Os05t0519200-03;KEGG=Os05t0519200-03
Chr05	irgsp1_rep	five_prime_UTR	25772543	25772827	.	+	.	Parent=Os05t0519200-03
Chr05	irgsp1_rep	CDS	25772828	25773901	.	+	0	Parent=Os05t0519200-03
Chr05	irgsp1_rep	CDS	25774130	25774177	.	+	0	Parent=Os05t0519200-03
Chr05	irgsp1_rep	three_prime_UTR	25774178	25774931	.	+	.	Parent=Os05t0519200-03
Chr05	irgsp1_rep	three_prime_UTR	25775463	25775873	.	+	.	Parent=Os05t0519200-03
Chr05	irgsp1_rep	mRNA	25776481	25778593	.	-	.	ID=Os05t0519300-01;Name=Os05t0519300-01;Locus_id=Os05g0519300;Note=Protein of unknown function DUF506%2C plant family protein.;Transcript_evidence=AK110584 (DDBJ%2C Best hit);ORF_evidence=B6UDN7 (UniProt);InterPro=Protein of unknown function DUF506%2C plant (IPR006502);NIAS_FLcDNA=002-168-E12;Expression=AK110584;TENOR=Os05t0519300-01;KEGG=Os05t0519300-01
Chr05	irgsp1_rep	five_prime_UTR	25778503	25778593	.	-	.	Parent=Os05t0519300-01
Chr05	irgsp1_rep	CDS	25778290	25778502	.	-	0	Parent=Os05t0519300-01
Chr05	irgsp1_rep	CDS	25777850	25778099	.	-	0	Parent=Os05t0519300-01
Chr05	irgsp1_rep	CDS	25776764	25777221	.	-	2	Parent=Os05t0519300-01
Chr05	irgsp1_rep	three_prime_UTR	25776481	25776763	.	-	.	Parent=Os05t0519300-01
Chr05	irgsp1_rep	mRNA	25781735	25788535	.	-	.	ID=Os05t0519400-01;Name=Os05t0519400-01;Locus_id=Os05g0519400;RAP-DB Gene Symbol Synonym(s)=OsSec18%2C Sec18;Oryzabase Gene Symbol Synonym(s)=OsSec18%2C Sec18%2C OsNSF%2C NSF;Oryzabase Gene Name Synonym(s)=N-ethylmaleimide-sensitive factor;Note=Homologue of NSF (N-ethylmaleimide sensitive factor)%2C ATPase%2C Regulation of vacuolar morphology in endosperm cell;Transcript_evidence=AK072976;ORF_evidence=Q65X08;GO=Molecular Function: ATP binding (GO:0005524);InterPro=Aspartate decarboxylase-like domain (IPR009010),CDC48%2C N-terminal subdomain (IPR003338),CDC48 domain 2-like (IPR029067),CDC48%2C domain 2 (IPR004201),P-loop containing nucleoside triphosphate hydrolase (IPR027417),AAA+ ATPase domain (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);NIAS_FLcDNA=J023146P19;Manual Curation=February 27%2C 2015;Literature_PMID=25848690;Oryzabase=19544;Expression=AK072976;TENOR=Os05t0519400-01;KEGG=Os05t0519400-01 (EC:3.6.4.6)
Chr05	irgsp1_rep	five_prime_UTR	25788423	25788535	.	-	.	Parent=Os05t0519400-01
Chr05	irgsp1_rep	CDS	25788241	25788422	.	-	0	Parent=Os05t0519400-01
Chr05	irgsp1_rep	CDS	25787729	25787824	.	-	1	Parent=Os05t0519400-01
Chr05	irgsp1_rep	CDS	25787559	25787643	.	-	1	Parent=Os05t0519400-01
Chr05	irgsp1_rep	CDS	25787427	25787477	.	-	0	Parent=Os05t0519400-01
Chr05	irgsp1_rep	CDS	25787065	25787235	.	-	0	Parent=Os05t0519400-01
Chr05	irgsp1_rep	CDS	25786797	25786951	.	-	0	Parent=Os05t0519400-01
Chr05	irgsp1_rep	CDS	25786611	25786719	.	-	1	Parent=Os05t0519400-01
Chr05	irgsp1_rep	CDS	25785999	25786098	.	-	0	Parent=Os05t0519400-01
Chr05	irgsp1_rep	CDS	25785850	25785905	.	-	2	Parent=Os05t0519400-01
Chr05	irgsp1_rep	CDS	25785375	25785440	.	-	0	Parent=Os05t0519400-01
Chr05	irgsp1_rep	CDS	25785205	25785287	.	-	0	Parent=Os05t0519400-01
Chr05	irgsp1_rep	CDS	25784813	25784946	.	-	1	Parent=Os05t0519400-01
Chr05	irgsp1_rep	CDS	25784255	25784465	.	-	2	Parent=Os05t0519400-01
Chr05	irgsp1_rep	CDS	25783672	25783803	.	-	1	Parent=Os05t0519400-01
Chr05	irgsp1_rep	CDS	25783526	25783586	.	-	1	Parent=Os05t0519400-01
Chr05	irgsp1_rep	CDS	25783386	25783445	.	-	0	Parent=Os05t0519400-01
Chr05	irgsp1_rep	CDS	25783121	25783179	.	-	0	Parent=Os05t0519400-01
Chr05	irgsp1_rep	CDS	25782933	25783020	.	-	1	Parent=Os05t0519400-01
Chr05	irgsp1_rep	CDS	25782566	25782688	.	-	0	Parent=Os05t0519400-01
Chr05	irgsp1_rep	CDS	25782328	25782393	.	-	0	Parent=Os05t0519400-01
Chr05	irgsp1_rep	CDS	25782098	25782241	.	-	0	Parent=Os05t0519400-01
Chr05	irgsp1_rep	three_prime_UTR	25781735	25782097	.	-	.	Parent=Os05t0519400-01
Chr05	irgsp1_rep	mRNA	25781911	25785896	.	-	.	ID=Os05t0519400-02;Name=Os05t0519400-02;Locus_id=Os05g0519400;Oryzabase Gene Symbol Synonym(s)=OsSec18%2C Sec18%2C OsNSF%2C NSF;Oryzabase Gene Name Synonym(s)=N-ethylmaleimide-sensitive factor;Note=Similar to predicted protein.;Transcript_evidence=AK058216 (DDBJ%2C Best hit);ORF_evidence=Q40495 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);NIAS_FLcDNA=001-010-E10;Oryzabase=19544;Expression=AK058216;TENOR=Os05t0519400-02;KEGG=Os05t0519400-02 (EC:3.6.4.6)
Chr05	irgsp1_rep	five_prime_UTR	25785895	25785896	.	-	.	Parent=Os05t0519400-02
Chr05	irgsp1_rep	CDS	25785850	25785894	.	-	0	Parent=Os05t0519400-02
Chr05	irgsp1_rep	CDS	25785375	25785440	.	-	0	Parent=Os05t0519400-02
Chr05	irgsp1_rep	CDS	25785205	25785287	.	-	0	Parent=Os05t0519400-02
Chr05	irgsp1_rep	CDS	25784813	25784946	.	-	1	Parent=Os05t0519400-02
Chr05	irgsp1_rep	CDS	25784255	25784465	.	-	2	Parent=Os05t0519400-02
Chr05	irgsp1_rep	CDS	25783672	25783803	.	-	1	Parent=Os05t0519400-02
Chr05	irgsp1_rep	CDS	25783526	25783586	.	-	1	Parent=Os05t0519400-02
Chr05	irgsp1_rep	CDS	25783386	25783445	.	-	0	Parent=Os05t0519400-02
Chr05	irgsp1_rep	CDS	25783121	25783179	.	-	0	Parent=Os05t0519400-02
Chr05	irgsp1_rep	CDS	25782933	25783020	.	-	1	Parent=Os05t0519400-02
Chr05	irgsp1_rep	CDS	25782566	25782688	.	-	0	Parent=Os05t0519400-02
Chr05	irgsp1_rep	CDS	25782328	25782393	.	-	0	Parent=Os05t0519400-02
Chr05	irgsp1_rep	CDS	25782098	25782241	.	-	0	Parent=Os05t0519400-02
Chr05	irgsp1_rep	three_prime_UTR	25781911	25782097	.	-	.	Parent=Os05t0519400-02
Chr05	irgsp1_rep	mRNA	25781845	25784851	.	-	.	ID=Os05t0519400-03;Name=Os05t0519400-03;Locus_id=Os05g0519400;Oryzabase Gene Symbol Synonym(s)=OsSec18%2C Sec18%2C OsNSF%2C NSF;Oryzabase Gene Name Synonym(s)=N-ethylmaleimide-sensitive factor;Note=Similar to predicted protein.;Transcript_evidence=AK102296 (DDBJ%2C Best hit);ORF_evidence=Q40495 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959);NIAS_FLcDNA=J033089L09;Oryzabase=19544;Expression=AK102296;TENOR=Os05t0519400-03;KEGG=Os05t0519400-03 (EC:3.6.4.6)
Chr05	irgsp1_rep	five_prime_UTR	25784850	25784851	.	-	.	Parent=Os05t0519400-03
Chr05	irgsp1_rep	CDS	25784813	25784849	.	-	0	Parent=Os05t0519400-03
Chr05	irgsp1_rep	CDS	25784255	25784465	.	-	2	Parent=Os05t0519400-03
Chr05	irgsp1_rep	CDS	25783672	25783803	.	-	1	Parent=Os05t0519400-03
Chr05	irgsp1_rep	CDS	25783526	25783586	.	-	1	Parent=Os05t0519400-03
Chr05	irgsp1_rep	CDS	25783386	25783445	.	-	0	Parent=Os05t0519400-03
Chr05	irgsp1_rep	CDS	25783121	25783179	.	-	0	Parent=Os05t0519400-03
Chr05	irgsp1_rep	CDS	25782933	25783020	.	-	1	Parent=Os05t0519400-03
Chr05	irgsp1_rep	CDS	25782566	25782688	.	-	0	Parent=Os05t0519400-03
Chr05	irgsp1_rep	CDS	25782328	25782393	.	-	0	Parent=Os05t0519400-03
Chr05	irgsp1_rep	CDS	25782098	25782241	.	-	0	Parent=Os05t0519400-03
Chr05	irgsp1_rep	three_prime_UTR	25781845	25782097	.	-	.	Parent=Os05t0519400-03
Chr05	irgsp1_rep	mRNA	25788803	25793522	.	-	.	ID=Os05t0519500-01;Name=Os05t0519500-01;Locus_id=Os05g0519500;Oryzabase Gene Symbol Synonym(s)=OsWD40-120;Note=Similar to Periodic tryptophan protein-associated region%3B WD40-like.;Transcript_evidence=AK112075 (DDBJ%2C Best hit);ORF_evidence=E6NUE1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),Six-bladed beta-propeller%2C TolB-like (IPR011042),WD40 repeat-like-containing domain (IPR011046),Quinonprotein alcohol dehydrogenase-like (IPR011047),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=001-123-D01;Oryzabase=10801;Expression=AK112075;TENOR=Os05t0519500-01;KEGG=Os05t0519500-01
Chr05	irgsp1_rep	CDS	25792317	25793522	.	-	0	Parent=Os05t0519500-01
Chr05	irgsp1_rep	CDS	25791448	25791699	.	-	0	Parent=Os05t0519500-01
Chr05	irgsp1_rep	CDS	25791255	25791347	.	-	0	Parent=Os05t0519500-01
Chr05	irgsp1_rep	CDS	25790704	25791075	.	-	0	Parent=Os05t0519500-01
Chr05	irgsp1_rep	CDS	25790141	25790231	.	-	0	Parent=Os05t0519500-01
Chr05	irgsp1_rep	CDS	25788809	25788939	.	-	2	Parent=Os05t0519500-01
Chr05	irgsp1_rep	three_prime_UTR	25788803	25788808	.	-	.	Parent=Os05t0519500-01
Chr05	irgsp1_rep	mRNA	25788811	25793522	.	-	.	ID=Os05t0519500-02;Name=Os05t0519500-02;Locus_id=Os05g0519500;Oryzabase Gene Symbol Synonym(s)=OsWD40-120;Note=WD40/YVTN repeat-like domain containing protein.;Transcript_evidence=AK111856 (DDBJ%2C Best hit);ORF_evidence=E6NUE1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),Small-subunit processome%2C Utp12 (IPR007148),Six-bladed beta-propeller%2C TolB-like (IPR011042),WD40 repeat-like-containing domain (IPR011046),Quinonprotein alcohol dehydrogenase-like (IPR011047),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J033022A22;Oryzabase=10801;Expression=AK111856;TENOR=Os05t0519500-02;KEGG=Os05t0519500-02
Chr05	irgsp1_rep	CDS	25792317	25793522	.	-	0	Parent=Os05t0519500-02
Chr05	irgsp1_rep	CDS	25791448	25791699	.	-	0	Parent=Os05t0519500-02
Chr05	irgsp1_rep	CDS	25791255	25791347	.	-	0	Parent=Os05t0519500-02
Chr05	irgsp1_rep	CDS	25790704	25791075	.	-	0	Parent=Os05t0519500-02
Chr05	irgsp1_rep	CDS	25789887	25790231	.	-	0	Parent=Os05t0519500-02
Chr05	irgsp1_rep	CDS	25789567	25789794	.	-	0	Parent=Os05t0519500-02
Chr05	irgsp1_rep	CDS	25789309	25789479	.	-	0	Parent=Os05t0519500-02
Chr05	irgsp1_rep	three_prime_UTR	25789284	25789308	.	-	.	Parent=Os05t0519500-02
Chr05	irgsp1_rep	three_prime_UTR	25788811	25789164	.	-	.	Parent=Os05t0519500-02
Chr05	irgsp1_rep	mRNA	25797606	25800686	.	+	.	ID=Os05t0519600-01;Name=Os05t0519600-01;Locus_id=Os05g0519600;Oryzabase Gene Symbol Synonym(s)=OsDJ-1D%2C DJ-1D%2C OsDJ-1D.1%2C OsDJ-1D.2%2C OsDJ-1D.3%2C OsDJ-1D.4%2C OsDJ-1D.5;Oryzabase Gene Name Synonym(s)=DJ-1/PfpI domain containing protein D%2C DJ-1 protein D;Note=Similar to 4-methyl-5(B-hydroxyethyl)-thiazol monophosphate biosynthesis enzyme.;Transcript_evidence=AK071101 (DDBJ%2C Best hit);ORF_evidence=F2EG99 (UniProt);NIAS_FLcDNA=J023077J08;Oryzabase=20915;Expression=AK071101;TENOR=Os05t0519600-01;KEGG=Os05t0519600-01
Chr05	irgsp1_rep	five_prime_UTR	25797606	25797702	.	+	.	Parent=Os05t0519600-01
Chr05	irgsp1_rep	CDS	25797703	25797906	.	+	0	Parent=Os05t0519600-01
Chr05	irgsp1_rep	CDS	25797990	25798190	.	+	0	Parent=Os05t0519600-01
Chr05	irgsp1_rep	CDS	25799997	25800074	.	+	0	Parent=Os05t0519600-01
Chr05	irgsp1_rep	CDS	25800306	25800539	.	+	0	Parent=Os05t0519600-01
Chr05	irgsp1_rep	three_prime_UTR	25800540	25800686	.	+	.	Parent=Os05t0519600-01
Chr05	irgsp1_rep	mRNA	25797615	25803182	.	+	.	ID=Os05t0519600-02;Name=Os05t0519600-02;Locus_id=Os05g0519600;Oryzabase Gene Symbol Synonym(s)=OsDJ-1D%2C DJ-1D%2C OsDJ-1D.1%2C OsDJ-1D.2%2C OsDJ-1D.3%2C OsDJ-1D.4%2C OsDJ-1D.5;Oryzabase Gene Name Synonym(s)=DJ-1/PfpI domain containing protein D%2C DJ-1 protein D;Note=Hypothetical conserved gene.;Transcript_evidence=AK102422 (DDBJ%2C Best hit);ORF_evidence=Q6F2Y9 (UniProt);InterPro=ThiJ/PfpI (IPR002818),DJ-1 (IPR006287);NIAS_FLcDNA=J033093E03;Oryzabase=20915;Expression=AK102422;TENOR=Os05t0519600-02;KEGG=Os05t0519600-02
Chr05	irgsp1_rep	five_prime_UTR	25797615	25797702	.	+	.	Parent=Os05t0519600-02
Chr05	irgsp1_rep	CDS	25797703	25797906	.	+	0	Parent=Os05t0519600-02
Chr05	irgsp1_rep	CDS	25797990	25798190	.	+	0	Parent=Os05t0519600-02
Chr05	irgsp1_rep	CDS	25798897	25799046	.	+	0	Parent=Os05t0519600-02
Chr05	irgsp1_rep	CDS	25799138	25799317	.	+	0	Parent=Os05t0519600-02
Chr05	irgsp1_rep	CDS	25799997	25800074	.	+	0	Parent=Os05t0519600-02
Chr05	irgsp1_rep	CDS	25800306	25800506	.	+	0	Parent=Os05t0519600-02
Chr05	irgsp1_rep	CDS	25801610	25801747	.	+	0	Parent=Os05t0519600-02
Chr05	irgsp1_rep	CDS	25801828	25802040	.	+	0	Parent=Os05t0519600-02
Chr05	irgsp1_rep	three_prime_UTR	25802041	25802345	.	+	.	Parent=Os05t0519600-02
Chr05	irgsp1_rep	three_prime_UTR	25802852	25803182	.	+	.	Parent=Os05t0519600-02
Chr05	irgsp1_rep	mRNA	25803631	25807160	.	-	.	ID=Os05t0519700-01;Name=Os05t0519700-01;Locus_id=Os05g0519700;RAP-DB Gene Symbol Synonym(s)=HSP101%2C Oshsp101%2C OsHSP101%2C ClpB-cyt%2C OsClpB-cyt%2C ClpB-C/Hsp100%2C OsClpB-C;RAP-DB Gene Name Synonym(s)=HEAT SHOCK PROTEIN 101%2C Heat shock protein 101%2C class I Clp ATPase B-CYT%2C Clp-B cytoplasmic%2C Heat shock protein 101%2C ClpB/Hsp100 cytoplasmic isoform;CGSNL Gene Symbol=HSP101;CGSNL Gene Name=HEAT SHOCK PROTEIN 101;Oryzabase Gene Symbol Synonym(s)=Oshsp101%2C OsHSP101%2C ClpB-cyt%2C OsClpB-cyt%2C ClpB-C/Hsp100%2C OsClpB-C;Oryzabase Gene Name Synonym(s)=Heat shock protein 101%2C class I Clp ATPase B-CYT%2C Clp-B cytoplasmic%2C Heat shock protein 101%2C ClpB/Hsp100 cytoplasmic isoform;Note=Heat shock protein%2C Long-term acquired thermotolerance;Transcript_evidence=AK105433;ORF_evidence=Q6F2Y7;GO=Biological Process: protein metabolic process (GO:0019538),Molecular Function: ATP binding (GO:0005524);InterPro=ClpA/B family (IPR001270),Double Clp-N motif (IPR023150),Clp%2C N-terminal (IPR004176),P-loop containing nucleoside triphosphate hydrolase (IPR027417),AAA+ ATPase domain (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),Clp ATPase%2C C-terminal (IPR019489),ClpA/B%2C conserved site 1 (IPR018368),ClpA/B%2C conserved site 2 (IPR028299);NIAS_FLcDNA=001-124-F05;Manual Curation=April 18%2C 2014;Literature_PMID=24520156;Oryzabase=6160;TENOR=Os05t0519700-01;KEGG=Os05t0519700-01
Chr05	irgsp1_rep	five_prime_UTR	25806972	25807160	.	-	.	Parent=Os05t0519700-01
Chr05	irgsp1_rep	CDS	25805816	25806971	.	-	0	Parent=Os05t0519700-01
Chr05	irgsp1_rep	CDS	25804913	25805717	.	-	2	Parent=Os05t0519700-01
Chr05	irgsp1_rep	CDS	25804545	25804824	.	-	1	Parent=Os05t0519700-01
Chr05	irgsp1_rep	CDS	25804263	25804460	.	-	0	Parent=Os05t0519700-01
Chr05	irgsp1_rep	CDS	25803866	25804165	.	-	0	Parent=Os05t0519700-01
Chr05	irgsp1_rep	three_prime_UTR	25803631	25803865	.	-	.	Parent=Os05t0519700-01
Chr05	irgsp1_rep	mRNA	25803609	25807106	.	-	.	ID=Os05t0519700-02;Name=Os05t0519700-02;Locus_id=Os05g0519700;CGSNL Gene Symbol=HSP101;CGSNL Gene Name=HEAT SHOCK PROTEIN 101;Oryzabase Gene Symbol Synonym(s)=Oshsp101%2C OsHSP101%2C ClpB-cyt%2C OsClpB-cyt%2C ClpB-C/Hsp100%2C OsClpB-C;Oryzabase Gene Name Synonym(s)=Heat shock protein 101%2C class I Clp ATPase B-CYT%2C Clp-B cytoplasmic%2C Heat shock protein 101%2C ClpB/Hsp100 cytoplasmic isoform;Note=Heat shock protein 101.;Transcript_evidence=AK100903 (DDBJ%2C Best hit);ORF_evidence=Q6F2Y7 (UniProt);GO=Biological Process: protein metabolic process (GO:0019538),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=Chaperonin ClpA/B (IPR001270),ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),Clp%2C N-terminal (IPR004176),ATPase%2C AAA-2 (IPR013093),Chaperonin ClpA/B%2C conserved site (IPR018368),Clp ATPase%2C C-terminal (IPR019489),Double Clp-N motif (IPR023150);NIAS_FLcDNA=J023131M05;Oryzabase=6160;TENOR=Os05t0519700-02;KEGG=Os05t0519700-02
Chr05	irgsp1_rep	five_prime_UTR	25806972	25807106	.	-	.	Parent=Os05t0519700-02
Chr05	irgsp1_rep	CDS	25805816	25806971	.	-	0	Parent=Os05t0519700-02
Chr05	irgsp1_rep	CDS	25804913	25805717	.	-	2	Parent=Os05t0519700-02
Chr05	irgsp1_rep	CDS	25804545	25804824	.	-	1	Parent=Os05t0519700-02
Chr05	irgsp1_rep	CDS	25804263	25804460	.	-	0	Parent=Os05t0519700-02
Chr05	irgsp1_rep	CDS	25803866	25804165	.	-	0	Parent=Os05t0519700-02
Chr05	irgsp1_rep	three_prime_UTR	25803609	25803865	.	-	.	Parent=Os05t0519700-02
Chr05	irgsp1_rep	mRNA	25803737	25804189	.	-	.	ID=Os05t0519700-03;Name=Os05t0519700-03;Locus_id=Os05g0519700;CGSNL Gene Symbol=HSP101;CGSNL Gene Name=HEAT SHOCK PROTEIN 101;Oryzabase Gene Symbol Synonym(s)=Oshsp101%2C OsHSP101%2C ClpB-cyt%2C OsClpB-cyt%2C ClpB-C/Hsp100%2C OsClpB-C;Oryzabase Gene Name Synonym(s)=Heat shock protein 101%2C class I Clp ATPase B-CYT%2C Clp-B cytoplasmic%2C Heat shock protein 101%2C ClpB/Hsp100 cytoplasmic isoform;Note=Similar to Heat shock protein 101.;Transcript_evidence=AK121414 (DDBJ%2C Best hit);ORF_evidence=Q6F2Y7 (UniProt);InterPro=Clp ATPase%2C C-terminal (IPR019489);NIAS_FLcDNA=J023133A22;Oryzabase=6160;TENOR=Os05t0519700-03;KEGG=Os05t0519700-03
Chr05	irgsp1_rep	five_prime_UTR	25804184	25804189	.	-	.	Parent=Os05t0519700-03
Chr05	irgsp1_rep	CDS	25803866	25804183	.	-	0	Parent=Os05t0519700-03
Chr05	irgsp1_rep	three_prime_UTR	25803737	25803865	.	-	.	Parent=Os05t0519700-03
Chr05	irgsp1_rep	mRNA	25807630	25810946	.	+	.	ID=Os05t0519800-01;Name=Os05t0519800-01;Locus_id=Os05g0519800;Note=Integrase%2C N-terminal zinc-binding domain-like domain containing protein.;Transcript_evidence=AK069435 (DDBJ%2C Best hit);ORF_evidence=NP_565610.1 (RefSeq);InterPro=Protein of unknown function DUF28 (IPR002876),Integrase%2C N-terminal zinc-binding domain-like (IPR017856);NIAS_FLcDNA=J023024L22;Expression=AK069435;TENOR=Os05t0519800-01;KEGG=Os05t0519800-01
Chr05	irgsp1_rep	five_prime_UTR	25807630	25807671	.	+	.	Parent=Os05t0519800-01
Chr05	irgsp1_rep	CDS	25807672	25807768	.	+	0	Parent=Os05t0519800-01
Chr05	irgsp1_rep	CDS	25807853	25807971	.	+	2	Parent=Os05t0519800-01
Chr05	irgsp1_rep	CDS	25808355	25808416	.	+	0	Parent=Os05t0519800-01
Chr05	irgsp1_rep	CDS	25809059	25809215	.	+	1	Parent=Os05t0519800-01
Chr05	irgsp1_rep	CDS	25809455	25809759	.	+	0	Parent=Os05t0519800-01
Chr05	irgsp1_rep	CDS	25810164	25810284	.	+	1	Parent=Os05t0519800-01
Chr05	irgsp1_rep	CDS	25810632	25810724	.	+	0	Parent=Os05t0519800-01
Chr05	irgsp1_rep	three_prime_UTR	25810725	25810946	.	+	.	Parent=Os05t0519800-01
Chr05	irgsp1_rep	mRNA	25813083	25817129	.	-	.	ID=Os05t0519900-01;Name=Os05t0519900-01;Locus_id=Os05g0519900;Note=Similar to STT3A (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A)%3B oligosaccharyl transferase.;Transcript_evidence=AK070919 (DDBJ%2C Best hit);ORF_evidence=NP_568380.1 (RefSeq);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: oligosaccharyl transferase activity (GO:0004576);InterPro=Oligosaccharyl transferase%2C STT3 subunit (IPR003674);NIAS_FLcDNA=J023065M17;TENOR=Os05t0519900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	25817129	25817129	.	-	.	Parent=Os05t0519900-01
Chr05	irgsp1_rep	CDS	25816934	25817128	.	-	0	Parent=Os05t0519900-01
Chr05	irgsp1_rep	CDS	25816744	25816806	.	-	0	Parent=Os05t0519900-01
Chr05	irgsp1_rep	CDS	25816415	25816470	.	-	0	Parent=Os05t0519900-01
Chr05	irgsp1_rep	CDS	25815940	25816011	.	-	1	Parent=Os05t0519900-01
Chr05	irgsp1_rep	CDS	25815755	25815860	.	-	1	Parent=Os05t0519900-01
Chr05	irgsp1_rep	CDS	25815614	25815664	.	-	0	Parent=Os05t0519900-01
Chr05	irgsp1_rep	CDS	25815305	25815400	.	-	0	Parent=Os05t0519900-01
Chr05	irgsp1_rep	CDS	25815169	25815228	.	-	0	Parent=Os05t0519900-01
Chr05	irgsp1_rep	CDS	25814988	25815101	.	-	0	Parent=Os05t0519900-01
Chr05	irgsp1_rep	CDS	25814779	25814865	.	-	0	Parent=Os05t0519900-01
Chr05	irgsp1_rep	CDS	25814493	25814596	.	-	0	Parent=Os05t0519900-01
Chr05	irgsp1_rep	CDS	25814228	25814323	.	-	1	Parent=Os05t0519900-01
Chr05	irgsp1_rep	CDS	25813666	25813786	.	-	1	Parent=Os05t0519900-01
Chr05	irgsp1_rep	CDS	25813505	25813585	.	-	0	Parent=Os05t0519900-01
Chr05	irgsp1_rep	CDS	25813283	25813414	.	-	0	Parent=Os05t0519900-01
Chr05	irgsp1_rep	CDS	25813083	25813182	.	-	0	Parent=Os05t0519900-01
Chr05	irgsp1_rep	mRNA	25811211	25817129	.	-	.	ID=Os05t0519900-02;Name=Os05t0519900-02;Locus_id=Os05g0519900;Note=Similar to STT3A (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A)%3B oligosaccharyl transferase.;Transcript_evidence=AK067224 (DDBJ%2C Best hit);ORF_evidence=NP_568380.1 (RefSeq);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: oligosaccharyl transferase activity (GO:0004576);InterPro=Oligosaccharyl transferase%2C STT3 subunit (IPR003674);NIAS_FLcDNA=J013099L06;TENOR=Os05t0519900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	25817129	25817129	.	-	.	Parent=Os05t0519900-02
Chr05	irgsp1_rep	CDS	25816934	25817128	.	-	0	Parent=Os05t0519900-02
Chr05	irgsp1_rep	CDS	25816744	25816806	.	-	0	Parent=Os05t0519900-02
Chr05	irgsp1_rep	CDS	25816415	25816470	.	-	0	Parent=Os05t0519900-02
Chr05	irgsp1_rep	CDS	25815940	25816011	.	-	1	Parent=Os05t0519900-02
Chr05	irgsp1_rep	CDS	25815755	25815860	.	-	1	Parent=Os05t0519900-02
Chr05	irgsp1_rep	CDS	25815614	25815664	.	-	0	Parent=Os05t0519900-02
Chr05	irgsp1_rep	CDS	25815305	25815400	.	-	0	Parent=Os05t0519900-02
Chr05	irgsp1_rep	CDS	25815169	25815228	.	-	0	Parent=Os05t0519900-02
Chr05	irgsp1_rep	CDS	25814988	25815101	.	-	0	Parent=Os05t0519900-02
Chr05	irgsp1_rep	CDS	25814779	25814865	.	-	0	Parent=Os05t0519900-02
Chr05	irgsp1_rep	CDS	25814493	25814596	.	-	0	Parent=Os05t0519900-02
Chr05	irgsp1_rep	CDS	25814228	25814323	.	-	1	Parent=Os05t0519900-02
Chr05	irgsp1_rep	CDS	25813666	25813786	.	-	1	Parent=Os05t0519900-02
Chr05	irgsp1_rep	CDS	25813505	25813585	.	-	0	Parent=Os05t0519900-02
Chr05	irgsp1_rep	CDS	25813283	25813414	.	-	0	Parent=Os05t0519900-02
Chr05	irgsp1_rep	CDS	25812931	25813182	.	-	0	Parent=Os05t0519900-02
Chr05	irgsp1_rep	CDS	25812701	25812844	.	-	0	Parent=Os05t0519900-02
Chr05	irgsp1_rep	CDS	25812444	25812630	.	-	0	Parent=Os05t0519900-02
Chr05	irgsp1_rep	CDS	25812266	25812363	.	-	2	Parent=Os05t0519900-02
Chr05	irgsp1_rep	CDS	25812055	25812134	.	-	0	Parent=Os05t0519900-02
Chr05	irgsp1_rep	CDS	25811880	25811967	.	-	1	Parent=Os05t0519900-02
Chr05	irgsp1_rep	CDS	25811686	25811775	.	-	0	Parent=Os05t0519900-02
Chr05	irgsp1_rep	CDS	25811537	25811593	.	-	0	Parent=Os05t0519900-02
Chr05	irgsp1_rep	three_prime_UTR	25811211	25811536	.	-	.	Parent=Os05t0519900-02
Chr05	irgsp1_rep	mRNA	25811242	25815696	.	-	.	ID=Os05t0519900-03;Name=Os05t0519900-03;Locus_id=Os05g0519900;Note=Similar to predicted protein.;Transcript_evidence=AK101078 (DDBJ%2C Best hit);ORF_evidence=NP_568380.1 (RefSeq);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: oligosaccharyl transferase activity (GO:0004576);InterPro=Oligosaccharyl transferase%2C STT3 subunit (IPR003674);NIAS_FLcDNA=J033024C12;Expression=AK101078;TENOR=Os05t0519900-03;KEGG=Os05t0519900-03 (EC:2.4.1.119)
Chr05	irgsp1_rep	five_prime_UTR	25815665	25815696	.	-	.	Parent=Os05t0519900-03
Chr05	irgsp1_rep	CDS	25815614	25815664	.	-	0	Parent=Os05t0519900-03
Chr05	irgsp1_rep	CDS	25815305	25815400	.	-	0	Parent=Os05t0519900-03
Chr05	irgsp1_rep	CDS	25815169	25815228	.	-	0	Parent=Os05t0519900-03
Chr05	irgsp1_rep	CDS	25814988	25815101	.	-	0	Parent=Os05t0519900-03
Chr05	irgsp1_rep	CDS	25814779	25814865	.	-	0	Parent=Os05t0519900-03
Chr05	irgsp1_rep	CDS	25814493	25814596	.	-	0	Parent=Os05t0519900-03
Chr05	irgsp1_rep	CDS	25814228	25814323	.	-	1	Parent=Os05t0519900-03
Chr05	irgsp1_rep	CDS	25813666	25813786	.	-	1	Parent=Os05t0519900-03
Chr05	irgsp1_rep	CDS	25813505	25813585	.	-	0	Parent=Os05t0519900-03
Chr05	irgsp1_rep	CDS	25813283	25813414	.	-	0	Parent=Os05t0519900-03
Chr05	irgsp1_rep	CDS	25812931	25813182	.	-	0	Parent=Os05t0519900-03
Chr05	irgsp1_rep	CDS	25812701	25812844	.	-	0	Parent=Os05t0519900-03
Chr05	irgsp1_rep	CDS	25812444	25812630	.	-	0	Parent=Os05t0519900-03
Chr05	irgsp1_rep	CDS	25812266	25812363	.	-	2	Parent=Os05t0519900-03
Chr05	irgsp1_rep	CDS	25812021	25812134	.	-	0	Parent=Os05t0519900-03
Chr05	irgsp1_rep	three_prime_UTR	25811880	25812020	.	-	.	Parent=Os05t0519900-03
Chr05	irgsp1_rep	three_prime_UTR	25811686	25811775	.	-	.	Parent=Os05t0519900-03
Chr05	irgsp1_rep	three_prime_UTR	25811242	25811593	.	-	.	Parent=Os05t0519900-03
Chr05	irgsp1_rep	mRNA	25820744	25822805	.	-	.	ID=Os05t0520100-00;Name=Os05t0520100-00;Locus_id=Os05g0520100;Note=Similar to MPPN domain containing protein.;Transcript_evidence=BT036885 (DDBJ);ORF_evidence=NP_001152202.1 (RefSeq);InterPro=MPPN (IPR007846),Nucleoporin%2C NUP53 (IPR017389);TENOR=Os05t0520100-00;KEGG=Os05t0520100-00
Chr05	irgsp1_rep	CDS	25822261	25822805	.	-	0	Parent=Os05t0520100-00
Chr05	irgsp1_rep	CDS	25821789	25821900	.	-	1	Parent=Os05t0520100-00
Chr05	irgsp1_rep	CDS	25820983	25821321	.	-	0	Parent=Os05t0520100-00
Chr05	irgsp1_rep	three_prime_UTR	25820744	25820982	.	-	.	Parent=Os05t0520100-00
Chr05	irgsp1_rep	mRNA	25823772	25826831	.	-	.	ID=Os05t0520200-01;Name=Os05t0520200-01;Locus_id=Os05g0520200;Note=Similar to predicted protein.;Transcript_evidence=AK099433 (DDBJ%2C Best hit);ORF_evidence=NP_974671.4 (RefSeq);GO=Molecular Function: aminoacyl-tRNA hydrolase activity (GO:0004045);InterPro=Peptidyl-tRNA hydrolase%2C PTH2 (IPR002833),Peptidyl-tRNA hydrolase II domain (IPR023476);NIAS_FLcDNA=J013014G15;Expression=AK099433;TENOR=Os05t0520200-01;KEGG=Os05t0520200-01
Chr05	irgsp1_rep	five_prime_UTR	25826831	25826831	.	-	.	Parent=Os05t0520200-01
Chr05	irgsp1_rep	CDS	25826408	25826830	.	-	0	Parent=Os05t0520200-01
Chr05	irgsp1_rep	CDS	25826190	25826250	.	-	0	Parent=Os05t0520200-01
Chr05	irgsp1_rep	CDS	25825824	25825867	.	-	2	Parent=Os05t0520200-01
Chr05	irgsp1_rep	three_prime_UTR	25825798	25825823	.	-	.	Parent=Os05t0520200-01
Chr05	irgsp1_rep	three_prime_UTR	25825421	25825498	.	-	.	Parent=Os05t0520200-01
Chr05	irgsp1_rep	three_prime_UTR	25825257	25825329	.	-	.	Parent=Os05t0520200-01
Chr05	irgsp1_rep	three_prime_UTR	25824946	25824985	.	-	.	Parent=Os05t0520200-01
Chr05	irgsp1_rep	three_prime_UTR	25824522	25824588	.	-	.	Parent=Os05t0520200-01
Chr05	irgsp1_rep	three_prime_UTR	25823772	25824290	.	-	.	Parent=Os05t0520200-01
Chr05	irgsp1_rep	mRNA	25823704	25826801	.	-	.	ID=Os05t0520200-02;Name=Os05t0520200-02;Locus_id=Os05g0520200;Note=Peptidyl-tRNA hydrolase%2C PTH2 domain containing protein.;Transcript_evidence=AK061451 (DDBJ%2C Best hit);ORF_evidence=NP_974671.4 (RefSeq);GO=Molecular Function: aminoacyl-tRNA hydrolase activity (GO:0004045);InterPro=Peptidyl-tRNA hydrolase%2C PTH2 (IPR002833),Peptidyl-tRNA hydrolase II domain (IPR023476);NIAS_FLcDNA=006-307-F06;Expression=AK061451;TENOR=Os05t0520200-02;KEGG=Os05t0520200-02 (EC:3.1.1.29)
Chr05	irgsp1_rep	five_prime_UTR	25826755	25826801	.	-	.	Parent=Os05t0520200-02
Chr05	irgsp1_rep	CDS	25826698	25826754	.	-	0	Parent=Os05t0520200-02
Chr05	irgsp1_rep	CDS	25826408	25826626	.	-	0	Parent=Os05t0520200-02
Chr05	irgsp1_rep	CDS	25826190	25826250	.	-	0	Parent=Os05t0520200-02
Chr05	irgsp1_rep	CDS	25825831	25825867	.	-	2	Parent=Os05t0520200-02
Chr05	irgsp1_rep	CDS	25825421	25825498	.	-	1	Parent=Os05t0520200-02
Chr05	irgsp1_rep	CDS	25825257	25825329	.	-	1	Parent=Os05t0520200-02
Chr05	irgsp1_rep	CDS	25824946	25824985	.	-	0	Parent=Os05t0520200-02
Chr05	irgsp1_rep	CDS	25824539	25824588	.	-	2	Parent=Os05t0520200-02
Chr05	irgsp1_rep	three_prime_UTR	25824522	25824538	.	-	.	Parent=Os05t0520200-02
Chr05	irgsp1_rep	three_prime_UTR	25823704	25824290	.	-	.	Parent=Os05t0520200-02
Chr05	irgsp1_rep	mRNA	25832659	25834595	.	+	.	ID=Os05t0520300-00;Name=Os05t0520300-00;Locus_id=Os05g0520300;CGSNL Gene Symbol=GATA1;CGSNL Gene Name=GATA TRANSCRIPTION FACTOR 1;Oryzabase Gene Symbol Synonym(s)=OsGATA1%2C OsGATA6%2C GATA6;Oryzabase Gene Name Synonym(s)=GATA transcription factor 1%2C GATA factor 1;Note=Similar to GATA transcription factor 3 (AtGATA-3).;Transcript_evidence=CT837664 (DDBJ%2C Best hit);ORF_evidence=NP_001056071.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: positive regulation of transcription%2C DNA-dependent (GO:0045893),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Zinc finger%2C GATA-type (IPR000679),Zinc finger%2C NHR/GATA-type (IPR013088),Transcription factor%2C GATA%2C plant (IPR016679);Oryzabase=20486;TENOR=Os05t0520300-00;KEGG=Os05t0520300-00
Chr05	irgsp1_rep	five_prime_UTR	25832659	25832811	.	+	.	Parent=Os05t0520300-00
Chr05	irgsp1_rep	CDS	25832812	25833132	.	+	0	Parent=Os05t0520300-00
Chr05	irgsp1_rep	CDS	25833498	25834337	.	+	0	Parent=Os05t0520300-00
Chr05	irgsp1_rep	three_prime_UTR	25834338	25834595	.	+	.	Parent=Os05t0520300-00
Chr05	irgsp1_rep	mRNA	25833421	25834392	.	-	.	ID=Os05t0520401-00;Name=Os05t0520401-00;Locus_id=Os05g0520401;Note=Hypothetical protein.;Transcript_evidence=FP100733 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0520401-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	25834350	25834392	.	-	.	Parent=Os05t0520401-00
Chr05	irgsp1_rep	CDS	25833444	25834349	.	-	0	Parent=Os05t0520401-00
Chr05	irgsp1_rep	three_prime_UTR	25833421	25833443	.	-	.	Parent=Os05t0520401-00
Chr05	irgsp1_rep	mRNA	25854288	25855541	.	+	.	ID=Os05t0520600-01;Name=Os05t0520600-01;Locus_id=Os05g0520600;Note=Conserved hypothetical protein.;Transcript_evidence=AK067487 (DDBJ%2C Best hit);ORF_evidence=A2Y6M2 (UniProt);NIAS_FLcDNA=J013107G24;Expression=AK067487;TENOR=Os05t0520600-01;KEGG=Os05t0520600-01
Chr05	irgsp1_rep	five_prime_UTR	25854288	25854416	.	+	.	Parent=Os05t0520600-01
Chr05	irgsp1_rep	CDS	25854417	25855358	.	+	0	Parent=Os05t0520600-01
Chr05	irgsp1_rep	three_prime_UTR	25855359	25855541	.	+	.	Parent=Os05t0520600-01
Chr05	irgsp1_rep	mRNA	25917505	25917577	.	+	.	ID=Os05t0521150-00;Name=Os05t0521150-00;Locus_id=Os05g0521150;Note=Non-protein coding transcript.;Transcript_evidence=X02683 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0521150-00
Chr05	irgsp1_rep	exon	25917505	25917577	.	+	.	Parent=Os05t0521150-00
Chr05	irgsp1_rep	mRNA	25927984	25935287	.	-	.	ID=Os05t0521300-01;Name=Os05t0521300-01;Locus_id=Os05g0521300;CGSNL Gene Symbol=PHP3;CGSNL Gene Name=PSEUDO-PHOSPHOTRANSFER PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsPHP3%2C Hpt5%2C OsHP4%2C OsHpt5%2C OsHpt5a%2C OsHpt5b%2C OsHpt5c;Oryzabase Gene Name Synonym(s)=pseudo-phosphotransfer protein 3;Note=Similar to Histidine-containing phosphotransfer protein 4.;Transcript_evidence=AK072664 (DDBJ%2C Best hit);ORF_evidence=B6SY22 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Molecular Function: signal transducer activity (GO:0004871);InterPro=Signal transduction histidine kinase%2C phosphotransfer (Hpt) domain (IPR008207);NIAS_FLcDNA=J023134D13;Oryzabase=9829;Expression=AK072664;TENOR=Os05t0521300-01;KEGG=Os05t0521300-01
Chr05	irgsp1_rep	five_prime_UTR	25934978	25935287	.	-	.	Parent=Os05t0521300-01
Chr05	irgsp1_rep	five_prime_UTR	25934492	25934587	.	-	.	Parent=Os05t0521300-01
Chr05	irgsp1_rep	five_prime_UTR	25930936	25933463	.	-	.	Parent=Os05t0521300-01
Chr05	irgsp1_rep	CDS	25930802	25930935	.	-	0	Parent=Os05t0521300-01
Chr05	irgsp1_rep	CDS	25930638	25930706	.	-	1	Parent=Os05t0521300-01
Chr05	irgsp1_rep	CDS	25929666	25929737	.	-	1	Parent=Os05t0521300-01
Chr05	irgsp1_rep	CDS	25929093	25929189	.	-	1	Parent=Os05t0521300-01
Chr05	irgsp1_rep	CDS	25928475	25928528	.	-	0	Parent=Os05t0521300-01
Chr05	irgsp1_rep	three_prime_UTR	25927984	25928474	.	-	.	Parent=Os05t0521300-01
Chr05	irgsp1_rep	mRNA	25926142	25931530	.	-	.	ID=Os05t0521300-02;Name=Os05t0521300-02;Locus_id=Os05g0521300;CGSNL Gene Symbol=PHP3;CGSNL Gene Name=PSEUDO-PHOSPHOTRANSFER PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsPHP3%2C Hpt5%2C OsHP4%2C OsHpt5%2C OsHpt5a%2C OsHpt5b%2C OsHpt5c;Oryzabase Gene Name Synonym(s)=pseudo-phosphotransfer protein 3;Note=Similar to Histidine-containing phosphotransfer protein 4.;Transcript_evidence=AK065848 (DDBJ%2C Best hit);ORF_evidence=B6SY22 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Molecular Function: signal transducer activity (GO:0004871);InterPro=Signal transduction histidine kinase%2C phosphotransfer (Hpt) domain (IPR008207);NIAS_FLcDNA=J013041B11;Oryzabase=9829;Expression=AK065848;TENOR=Os05t0521300-02;KEGG=Os05t0521300-02
Chr05	irgsp1_rep	five_prime_UTR	25930936	25931530	.	-	.	Parent=Os05t0521300-02
Chr05	irgsp1_rep	CDS	25930802	25930935	.	-	0	Parent=Os05t0521300-02
Chr05	irgsp1_rep	CDS	25930638	25930706	.	-	1	Parent=Os05t0521300-02
Chr05	irgsp1_rep	CDS	25929666	25929737	.	-	1	Parent=Os05t0521300-02
Chr05	irgsp1_rep	CDS	25929054	25929165	.	-	1	Parent=Os05t0521300-02
Chr05	irgsp1_rep	three_prime_UTR	25926142	25929053	.	-	.	Parent=Os05t0521300-02
Chr05	irgsp1_rep	mRNA	25928278	25931525	.	-	.	ID=Os05t0521300-03;Name=Os05t0521300-03;Locus_id=Os05g0521300;CGSNL Gene Symbol=PHP3;CGSNL Gene Name=PSEUDO-PHOSPHOTRANSFER PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsPHP3%2C Hpt5%2C OsHP4%2C OsHpt5%2C OsHpt5a%2C OsHpt5b%2C OsHpt5c;Oryzabase Gene Name Synonym(s)=pseudo-phosphotransfer protein 3;Note=Similar to histidine-containing phosphotransfer protein 4.;Transcript_evidence=AK120693 (DDBJ%2C Best hit);ORF_evidence=B6SY22 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Molecular Function: signal transducer activity (GO:0004871);InterPro=Signal transduction histidine kinase%2C phosphotransfer (Hpt) domain (IPR008207);NIAS_FLcDNA=J013169O12;Oryzabase=9829;Expression=AK120693;TENOR=Os05t0521300-03;KEGG=Os05t0521300-03
Chr05	irgsp1_rep	five_prime_UTR	25931429	25931525	.	-	.	Parent=Os05t0521300-03
Chr05	irgsp1_rep	CDS	25931368	25931428	.	-	0	Parent=Os05t0521300-03
Chr05	irgsp1_rep	CDS	25930802	25930931	.	-	2	Parent=Os05t0521300-03
Chr05	irgsp1_rep	CDS	25930638	25930706	.	-	1	Parent=Os05t0521300-03
Chr05	irgsp1_rep	CDS	25929666	25929737	.	-	1	Parent=Os05t0521300-03
Chr05	irgsp1_rep	CDS	25929093	25929165	.	-	1	Parent=Os05t0521300-03
Chr05	irgsp1_rep	CDS	25928475	25928528	.	-	0	Parent=Os05t0521300-03
Chr05	irgsp1_rep	three_prime_UTR	25928278	25928474	.	-	.	Parent=Os05t0521300-03
Chr05	irgsp1_rep	mRNA	25918401	25931524	.	-	.	ID=Os05t0521300-04;Name=Os05t0521300-04;Locus_id=Os05g0521300;CGSNL Gene Symbol=PHP3;CGSNL Gene Name=PSEUDO-PHOSPHOTRANSFER PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsPHP3%2C Hpt5%2C OsHP4%2C OsHpt5%2C OsHpt5a%2C OsHpt5b%2C OsHpt5c;Oryzabase Gene Name Synonym(s)=pseudo-phosphotransfer protein 3;Note=Similar to kinesin motor protein-related.;Transcript_evidence=AK065361 (DDBJ%2C Best hit);ORF_evidence=NP_176551.3 (RefSeq);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=Calponin homology domain (IPR001715),Kinesin%2C motor domain (IPR001752);NIAS_FLcDNA=J013014A12;Oryzabase=9829;TENOR=Os05t0521300-04;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	25931368	25931524	.	-	.	Parent=Os05t0521300-04
Chr05	irgsp1_rep	five_prime_UTR	25930802	25930931	.	-	.	Parent=Os05t0521300-04
Chr05	irgsp1_rep	five_prime_UTR	25930638	25930706	.	-	.	Parent=Os05t0521300-04
Chr05	irgsp1_rep	five_prime_UTR	25929666	25929737	.	-	.	Parent=Os05t0521300-04
Chr05	irgsp1_rep	five_prime_UTR	25929093	25929165	.	-	.	Parent=Os05t0521300-04
Chr05	irgsp1_rep	five_prime_UTR	25928412	25928528	.	-	.	Parent=Os05t0521300-04
Chr05	irgsp1_rep	five_prime_UTR	25928143	25928223	.	-	.	Parent=Os05t0521300-04
Chr05	irgsp1_rep	CDS	25928115	25928142	.	-	0	Parent=Os05t0521300-04
Chr05	irgsp1_rep	CDS	25925153	25925307	.	-	2	Parent=Os05t0521300-04
Chr05	irgsp1_rep	CDS	25924945	25925058	.	-	0	Parent=Os05t0521300-04
Chr05	irgsp1_rep	CDS	25924131	25924356	.	-	0	Parent=Os05t0521300-04
Chr05	irgsp1_rep	CDS	25923588	25923685	.	-	2	Parent=Os05t0521300-04
Chr05	irgsp1_rep	CDS	25923420	25923503	.	-	0	Parent=Os05t0521300-04
Chr05	irgsp1_rep	CDS	25923261	25923338	.	-	0	Parent=Os05t0521300-04
Chr05	irgsp1_rep	CDS	25923086	25923178	.	-	0	Parent=Os05t0521300-04
Chr05	irgsp1_rep	CDS	25922964	25922993	.	-	0	Parent=Os05t0521300-04
Chr05	irgsp1_rep	CDS	25922382	25922723	.	-	0	Parent=Os05t0521300-04
Chr05	irgsp1_rep	CDS	25922224	25922305	.	-	0	Parent=Os05t0521300-04
Chr05	irgsp1_rep	CDS	25922055	25922150	.	-	2	Parent=Os05t0521300-04
Chr05	irgsp1_rep	CDS	25921800	25921979	.	-	2	Parent=Os05t0521300-04
Chr05	irgsp1_rep	CDS	25921613	25921719	.	-	2	Parent=Os05t0521300-04
Chr05	irgsp1_rep	CDS	25921291	25921467	.	-	0	Parent=Os05t0521300-04
Chr05	irgsp1_rep	CDS	25921025	25921188	.	-	0	Parent=Os05t0521300-04
Chr05	irgsp1_rep	CDS	25920688	25920941	.	-	1	Parent=Os05t0521300-04
Chr05	irgsp1_rep	CDS	25920436	25920599	.	-	2	Parent=Os05t0521300-04
Chr05	irgsp1_rep	CDS	25919365	25919756	.	-	0	Parent=Os05t0521300-04
Chr05	irgsp1_rep	CDS	25919094	25919194	.	-	1	Parent=Os05t0521300-04
Chr05	irgsp1_rep	CDS	25918669	25918742	.	-	2	Parent=Os05t0521300-04
Chr05	irgsp1_rep	three_prime_UTR	25918401	25918668	.	-	.	Parent=Os05t0521300-04
Chr05	irgsp1_rep	mRNA	25935429	25938894	.	+	.	ID=Os05t0521400-01;Name=Os05t0521400-01;Locus_id=Os05g0521400;Note=Conserved hypothetical protein.;Transcript_evidence=AK066592 (DDBJ%2C Best hit);ORF_evidence=A2Y6M3 (UniProt);NIAS_FLcDNA=J013072D05;Oryzabase=17586;TENOR=Os05t0521400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	25935429	25935477	.	+	.	Parent=Os05t0521400-01
Chr05	irgsp1_rep	five_prime_UTR	25936211	25936263	.	+	.	Parent=Os05t0521400-01
Chr05	irgsp1_rep	CDS	25936264	25936466	.	+	0	Parent=Os05t0521400-01
Chr05	irgsp1_rep	CDS	25936565	25936616	.	+	1	Parent=Os05t0521400-01
Chr05	irgsp1_rep	three_prime_UTR	25936617	25938894	.	+	.	Parent=Os05t0521400-01
Chr05	irgsp1_rep	mRNA	25936238	25937593	.	-	.	ID=Os05t0521450-00;Name=Os05t0521450-00;Locus_id=Os05g0521450;Note=Hypothetical protein.;Transcript_evidence=tplb0043a07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0521450-00
Chr05	irgsp1_rep	five_prime_UTR	25936918	25937593	.	-	.	Parent=Os05t0521450-00
Chr05	irgsp1_rep	CDS	25936672	25936917	.	-	0	Parent=Os05t0521450-00
Chr05	irgsp1_rep	three_prime_UTR	25936238	25936671	.	-	.	Parent=Os05t0521450-00
Chr05	irgsp1_rep	mRNA	25942435	25947899	.	+	.	ID=Os05t0521500-01;Name=Os05t0521500-01;Locus_id=Os05g0521500;Note=Peptidase S16%2C lon N-terminal domain containing protein.;Transcript_evidence=AK066030 (DDBJ%2C Best hit);ORF_evidence=B8B010 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: ATP-dependent peptidase activity (GO:0004176);InterPro=Peptidase S16%2C lon N-terminal (IPR003111),PUA-like domain (IPR015947);NIAS_FLcDNA=J013044E12;Expression=AK066030;TENOR=Os05t0521500-01;KEGG=Os05t0521500-01
Chr05	irgsp1_rep	five_prime_UTR	25942435	25942574	.	+	.	Parent=Os05t0521500-01
Chr05	irgsp1_rep	CDS	25942575	25942732	.	+	0	Parent=Os05t0521500-01
Chr05	irgsp1_rep	CDS	25943286	25943359	.	+	1	Parent=Os05t0521500-01
Chr05	irgsp1_rep	CDS	25943444	25943521	.	+	2	Parent=Os05t0521500-01
Chr05	irgsp1_rep	CDS	25944217	25944329	.	+	2	Parent=Os05t0521500-01
Chr05	irgsp1_rep	CDS	25944404	25944469	.	+	0	Parent=Os05t0521500-01
Chr05	irgsp1_rep	CDS	25945279	25945380	.	+	0	Parent=Os05t0521500-01
Chr05	irgsp1_rep	CDS	25945463	25946012	.	+	0	Parent=Os05t0521500-01
Chr05	irgsp1_rep	CDS	25946239	25946444	.	+	2	Parent=Os05t0521500-01
Chr05	irgsp1_rep	CDS	25947166	25947329	.	+	0	Parent=Os05t0521500-01
Chr05	irgsp1_rep	CDS	25947455	25947608	.	+	1	Parent=Os05t0521500-01
Chr05	irgsp1_rep	three_prime_UTR	25947609	25947899	.	+	.	Parent=Os05t0521500-01
Chr05	irgsp1_rep	mRNA	25949173	25952201	.	+	.	ID=Os05t0521600-01;Name=Os05t0521600-01;Locus_id=Os05g0521600;CGSNL Gene Symbol=PME18;CGSNL Gene Name=PECTIN METHYLESTERASE 18;Oryzabase Gene Symbol Synonym(s)=OsPME18;Oryzabase Gene Name Synonym(s)=pectin methylesterase 18;Note=Pectin lyase fold/virulence factor domain containing protein.;Transcript_evidence=AK063238 (DDBJ%2C Best hit);ORF_evidence=B8B011 (UniProt);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),Pectinesterase%2C active site (IPR018040);NIAS_FLcDNA=001-112-G01;Oryzabase=13182;Expression=AK063238;TENOR=Os05t0521600-01;KEGG=Os05t0521600-01
Chr05	irgsp1_rep	five_prime_UTR	25949173	25949179	.	+	.	Parent=Os05t0521600-01
Chr05	irgsp1_rep	CDS	25949180	25949595	.	+	0	Parent=Os05t0521600-01
Chr05	irgsp1_rep	CDS	25949709	25949898	.	+	1	Parent=Os05t0521600-01
Chr05	irgsp1_rep	CDS	25949980	25950186	.	+	0	Parent=Os05t0521600-01
Chr05	irgsp1_rep	CDS	25951453	25951688	.	+	0	Parent=Os05t0521600-01
Chr05	irgsp1_rep	CDS	25951915	25952062	.	+	1	Parent=Os05t0521600-01
Chr05	irgsp1_rep	three_prime_UTR	25952063	25952201	.	+	.	Parent=Os05t0521600-01
Chr05	irgsp1_rep	mRNA	25949191	25952064	.	-	.	ID=Os05t0521650-00;Name=Os05t0521650-00;Locus_id=Os05g0521650;Note=Hypothetical protein.;Transcript_evidence=tplb0031m20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0521650-00
Chr05	irgsp1_rep	five_prime_UTR	25951915	25952064	.	-	.	Parent=Os05t0521650-00
Chr05	irgsp1_rep	five_prime_UTR	25951111	25951688	.	-	.	Parent=Os05t0521650-00
Chr05	irgsp1_rep	five_prime_UTR	25950118	25950993	.	-	.	Parent=Os05t0521650-00
Chr05	irgsp1_rep	CDS	25949978	25950117	.	-	0	Parent=Os05t0521650-00
Chr05	irgsp1_rep	CDS	25949710	25949896	.	-	1	Parent=Os05t0521650-00
Chr05	irgsp1_rep	CDS	25949191	25949596	.	-	0	Parent=Os05t0521650-00
Chr05	irgsp1_rep	mRNA	25952753	25955720	.	+	.	ID=Os05t0521700-01;Name=Os05t0521700-01;Locus_id=Os05g0521700;Note=Conserved hypothetical protein.;Transcript_evidence=AK070182 (DDBJ%2C Best hit);ORF_evidence=Q8GVS6 (UniProt);NIAS_FLcDNA=J023045H17;TENOR=Os05t0521700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	25952753	25955210	.	+	.	Parent=Os05t0521700-01
Chr05	irgsp1_rep	CDS	25955211	25955369	.	+	0	Parent=Os05t0521700-01
Chr05	irgsp1_rep	three_prime_UTR	25955370	25955720	.	+	.	Parent=Os05t0521700-01
Chr05	irgsp1_rep	mRNA	25962545	25964535	.	-	.	ID=Os05t0521900-00;Name=Os05t0521900-00;Locus_id=Os05g0521900;Note=Similar to IQ calmodulin-binding motif family protein.;Transcript_evidence=EU958032 (DDBJ);ORF_evidence=NP_001152257.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);TENOR=Os05t0521900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	25964497	25964535	.	-	.	Parent=Os05t0521900-00
Chr05	irgsp1_rep	CDS	25964197	25964496	.	-	0	Parent=Os05t0521900-00
Chr05	irgsp1_rep	CDS	25963259	25963432	.	-	0	Parent=Os05t0521900-00
Chr05	irgsp1_rep	CDS	25962545	25963174	.	-	0	Parent=Os05t0521900-00
Chr05	irgsp1_rep	mRNA	25962558	25963784	.	+	.	ID=Os05t0521950-00;Name=Os05t0521950-00;Locus_id=Os05g0521950;Note=Hypothetical protein.;Transcript_evidence=AK361221 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0521950-00
Chr05	irgsp1_rep	five_prime_UTR	25962558	25962559	.	+	.	Parent=Os05t0521950-00
Chr05	irgsp1_rep	CDS	25962560	25963213	.	+	0	Parent=Os05t0521950-00
Chr05	irgsp1_rep	three_prime_UTR	25963214	25963784	.	+	.	Parent=Os05t0521950-00
Chr05	irgsp1_rep	mRNA	26017170	26017742	.	-	.	ID=Os05t0522250-00;Name=Os05t0522250-00;Locus_id=Os05g0522250;Note=Hypothetical gene.;Transcript_evidence=EU972642 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0522250-00;KEGG=Os05t0522250-00
Chr05	irgsp1_rep	CDS	26017314	26017742	.	-	0	Parent=Os05t0522250-00
Chr05	irgsp1_rep	three_prime_UTR	26017170	26017313	.	-	.	Parent=Os05t0522250-00
Chr05	irgsp1_rep	mRNA	26017332	26022265	.	+	.	ID=Os05t0522500-01;Name=Os05t0522500-01;Locus_id=Os05g0522500;RAP-DB Gene Symbol Synonym(s)=OsHXK5;RAP-DB Gene Name Synonym(s)=Hexokinase 5;CGSNL Gene Symbol=HXK5;CGSNL Gene Name=HEXOKINASE-5;Oryzabase Gene Symbol Synonym(s)=OsHXK5;Oryzabase Gene Name Synonym(s)=Hexokinase 5;Note=Hexokinase 5%2C Starch utilization pathway during pollen germination and tube growth%2C Starch biosynthesis during pollen maturation%2C Glucose sensor;Transcript_evidence=AK065207;ORF_evidence=Q5W676;GO=Biological Process: cellular glucose homeostasis (GO:0001678),Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: glycolytic process (GO:0006096),Molecular Function: hexokinase activity (GO:0004396),Molecular Function: ATP binding (GO:0005524),Molecular Function: glucose binding (GO:0005536),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Hexokinase (IPR001312),Hexokinase%2C N-terminal (IPR022672),Hexokinase%2C C-terminal (IPR022673),Hexokinase%2C binding site (IPR019807);NIAS_FLcDNA=J013002F14;Manual Curation=November 7%2C 2019;Literature_PMID=31671177,19010999;Oryzabase=9006;Expression=AK065207;TENOR=Os05t0522500-01;KEGG=Os05t0522500-01 (EC:2.7.1.1);Subcellular location=mitochondrion (GO:0005739)
Chr05	irgsp1_rep	five_prime_UTR	26017332	26017470	.	+	.	Parent=Os05t0522500-01
Chr05	irgsp1_rep	CDS	26017471	26017769	.	+	0	Parent=Os05t0522500-01
Chr05	irgsp1_rep	CDS	26019282	26019432	.	+	1	Parent=Os05t0522500-01
Chr05	irgsp1_rep	CDS	26019516	26019698	.	+	0	Parent=Os05t0522500-01
Chr05	irgsp1_rep	CDS	26020039	26020113	.	+	0	Parent=Os05t0522500-01
Chr05	irgsp1_rep	CDS	26020284	26020439	.	+	0	Parent=Os05t0522500-01
Chr05	irgsp1_rep	CDS	26020574	26020672	.	+	0	Parent=Os05t0522500-01
Chr05	irgsp1_rep	CDS	26020756	26020886	.	+	0	Parent=Os05t0522500-01
Chr05	irgsp1_rep	CDS	26021376	26021457	.	+	1	Parent=Os05t0522500-01
Chr05	irgsp1_rep	CDS	26021550	26021897	.	+	0	Parent=Os05t0522500-01
Chr05	irgsp1_rep	three_prime_UTR	26021898	26022265	.	+	.	Parent=Os05t0522500-01
Chr05	irgsp1_rep	mRNA	26022305	26025796	.	-	.	ID=Os05t0522600-01;Name=Os05t0522600-01;Locus_id=Os05g0522600;Note=Leucine-rich repeat%2C plant specific containing protein.;Transcript_evidence=AK100082 (DDBJ%2C Best hit);ORF_evidence=Q5W675 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023002E24;Expression=AK100082;TENOR=Os05t0522600-01;KEGG=Os05t0522600-01
Chr05	irgsp1_rep	five_prime_UTR	26025720	26025796	.	-	.	Parent=Os05t0522600-01
Chr05	irgsp1_rep	CDS	26023875	26025719	.	-	0	Parent=Os05t0522600-01
Chr05	irgsp1_rep	CDS	26023037	26023778	.	-	0	Parent=Os05t0522600-01
Chr05	irgsp1_rep	CDS	26022475	26022932	.	-	2	Parent=Os05t0522600-01
Chr05	irgsp1_rep	three_prime_UTR	26022305	26022474	.	-	.	Parent=Os05t0522600-01
Chr05	irgsp1_rep	mRNA	26024469	26025104	.	-	.	ID=Os05t0522600-02;Name=Os05t0522600-02;Locus_id=Os05g0522600;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=AK072881 (DDBJ%2C Best hit);ORF_evidence=Q5W675 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=J023148N15;TENOR=Os05t0522600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	26024469	26025104	.	-	0	Parent=Os05t0522600-02
Chr05	irgsp1_rep	mRNA	26028190	26029166	.	-	.	ID=Os05t0522700-01;Name=Os05t0522700-01;Locus_id=Os05g0522700;Note=Conserved hypothetical protein.;Transcript_evidence=AK100948 (DDBJ%2C Best hit);ORF_evidence=B8B013 (UniProt);NIAS_FLcDNA=J023139E09;Expression=AK100948;TENOR=Os05t0522700-01;KEGG=Os05t0522700-01
Chr05	irgsp1_rep	five_prime_UTR	26029091	26029166	.	-	.	Parent=Os05t0522700-01
Chr05	irgsp1_rep	CDS	26028392	26029090	.	-	0	Parent=Os05t0522700-01
Chr05	irgsp1_rep	three_prime_UTR	26028190	26028391	.	-	.	Parent=Os05t0522700-01
Chr05	irgsp1_rep	mRNA	26038540	26044930	.	-	.	ID=Os05t0523100-01;Name=Os05t0523100-01;Locus_id=Os05g0523100;Note=Conserved hypothetical protein.;Transcript_evidence=AK288625 (DDBJ%2C Best hit),AK288199 (DDBJ%2C Best hit);ORF_evidence=Q5W673 (UniProt);NIAS_FLcDNA=J090054J08,J090008E08;TENOR=Os05t0523100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	26039481	26044930	.	-	.	Parent=Os05t0523100-01
Chr05	irgsp1_rep	CDS	26038540	26039480	.	-	0	Parent=Os05t0523100-01
Chr05	irgsp1_rep	mRNA	26049874	26050503	.	+	.	ID=Os05t0523200-01;Name=Os05t0523200-01;Locus_id=Os05g0523200;Note=Hypothetical protein.;Transcript_evidence=AK119973 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-184-E08;Expression=AK119973;TENOR=Os05t0523200-01;KEGG=Os05t0523200-01
Chr05	irgsp1_rep	CDS	26049874	26050392	.	+	0	Parent=Os05t0523200-01
Chr05	irgsp1_rep	three_prime_UTR	26050393	26050503	.	+	.	Parent=Os05t0523200-01
Chr05	irgsp1_rep	mRNA	26052916	26055714	.	-	.	ID=Os05t0523300-01;Name=Os05t0523300-01;Locus_id=Os05g0523300;CGSNL Gene Symbol=IAA18;Oryzabase Gene Symbol Synonym(s)=OsIAA18;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 18;Note=Similar to IAA8 (Fragment).;Transcript_evidence=AK071192 (DDBJ%2C Best hit);ORF_evidence=Q5W670 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Aux/IAA-ARF-dimerisation (IPR011525);NIAS_FLcDNA=J023087E13;Oryzabase=10907;Expression=AK071192;TENOR=Os05t0523300-01;KEGG=Os05t0523300-01
Chr05	irgsp1_rep	five_prime_UTR	26055529	26055714	.	-	.	Parent=Os05t0523300-01
Chr05	irgsp1_rep	CDS	26055189	26055528	.	-	0	Parent=Os05t0523300-01
Chr05	irgsp1_rep	CDS	26054954	26055098	.	-	2	Parent=Os05t0523300-01
Chr05	irgsp1_rep	CDS	26054113	26054375	.	-	1	Parent=Os05t0523300-01
Chr05	irgsp1_rep	CDS	26053851	26053998	.	-	2	Parent=Os05t0523300-01
Chr05	irgsp1_rep	CDS	26053395	26053458	.	-	1	Parent=Os05t0523300-01
Chr05	irgsp1_rep	CDS	26053142	26053165	.	-	0	Parent=Os05t0523300-01
Chr05	irgsp1_rep	three_prime_UTR	26052916	26053141	.	-	.	Parent=Os05t0523300-01
Chr05	irgsp1_rep	mRNA	26094863	26095836	.	+	.	ID=Os05t0524100-01;Name=Os05t0524100-01;Locus_id=Os05g0524100;CGSNL Gene Symbol=O3L4;CGSNL Gene Name=OXS3-LIKE 4;Oryzabase Gene Symbol Synonym(s)=OsO3L4;Oryzabase Gene Name Synonym(s)=OXIDATIVE STRESS 3-like 4%2C OXS3-like 4;Note=Conserved hypothetical protein.;Transcript_evidence=AK067043 (DDBJ%2C Best hit);ORF_evidence=B9FH11 (UniProt);NIAS_FLcDNA=J013091B04;Oryzabase=22447;Expression=AK067043;TENOR=Os05t0524100-01;KEGG=Os05t0524100-01
Chr05	irgsp1_rep	five_prime_UTR	26094863	26094863	.	+	.	Parent=Os05t0524100-01
Chr05	irgsp1_rep	CDS	26094864	26095586	.	+	0	Parent=Os05t0524100-01
Chr05	irgsp1_rep	three_prime_UTR	26095587	26095836	.	+	.	Parent=Os05t0524100-01
Chr05	irgsp1_rep	mRNA	26095991	26099189	.	-	.	ID=Os05t0524200-01;Name=Os05t0524200-01;Locus_id=Os05g0524200;Oryzabase Gene Symbol Synonym(s)=OsPP77;Oryzabase Gene Name Synonym(s)=Protein phosphatase 77;Note=Protein-tyrosine phosphatase%2C dual specificity domain containing protein.;Transcript_evidence=AK071990 (DDBJ%2C Best hit);ORF_evidence=B6TA53 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Biological Process: dephosphorylation (GO:0016311),Molecular Function: protein tyrosine phosphatase activity (GO:0004725),Molecular Function: protein tyrosine/serine/threonine phosphatase activity (GO:0008138),Molecular Function: phosphatase activity (GO:0016791);InterPro=Dual specificity phosphatase%2C catalytic domain (IPR000340),Protein-tyrosine/Dual-specificity phosphatase (IPR000387),Protein-tyrosine phosphatase%2C active site (IPR016130),Dual specificity phosphatase%2C subgroup%2C catalytic domain (IPR020422);NIAS_FLcDNA=J013090B20;Oryzabase=18645;Expression=AK071990;TENOR=Os05t0524200-01;KEGG=Os05t0524200-01
Chr05	irgsp1_rep	five_prime_UTR	26099044	26099189	.	-	.	Parent=Os05t0524200-01
Chr05	irgsp1_rep	CDS	26098798	26099043	.	-	0	Parent=Os05t0524200-01
Chr05	irgsp1_rep	CDS	26098077	26098199	.	-	0	Parent=Os05t0524200-01
Chr05	irgsp1_rep	CDS	26097622	26097715	.	-	0	Parent=Os05t0524200-01
Chr05	irgsp1_rep	CDS	26097138	26097220	.	-	2	Parent=Os05t0524200-01
Chr05	irgsp1_rep	CDS	26096953	26097044	.	-	0	Parent=Os05t0524200-01
Chr05	irgsp1_rep	CDS	26096323	26096818	.	-	1	Parent=Os05t0524200-01
Chr05	irgsp1_rep	three_prime_UTR	26095991	26096322	.	-	.	Parent=Os05t0524200-01
Chr05	irgsp1_rep	mRNA	26101976	26106270	.	+	.	ID=Os05t0524300-01;Name=Os05t0524300-01;Locus_id=Os05g0524300;Oryzabase Gene Name Synonym(s)=Processing peptidase catalytic chain;Note=Similar to Mitochondrial processing peptidase.;Transcript_evidence=AK065794 (DDBJ%2C Best hit);ORF_evidence=Q41440 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: catalytic activity (GO:0003824),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: metal ion binding (GO:0046872);InterPro=Peptidase M16%2C zinc-binding site (IPR001431),Peptidase M16%2C C-terminal (IPR007863),Peptidase M16%2C core (IPR011237),Metalloenzyme%2C LuxS/M16 peptidase-like%2C metal-binding (IPR011249),Peptidase M16%2C N-terminal (IPR011765);NIAS_FLcDNA=J013042K01;Oryzabase=17648;TENOR=Os05t0524300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	26101976	26102130	.	+	.	Parent=Os05t0524300-01
Chr05	irgsp1_rep	CDS	26102131	26102376	.	+	0	Parent=Os05t0524300-01
Chr05	irgsp1_rep	CDS	26102456	26102752	.	+	0	Parent=Os05t0524300-01
Chr05	irgsp1_rep	CDS	26102833	26103000	.	+	0	Parent=Os05t0524300-01
Chr05	irgsp1_rep	CDS	26103090	26103257	.	+	0	Parent=Os05t0524300-01
Chr05	irgsp1_rep	CDS	26103345	26103425	.	+	0	Parent=Os05t0524300-01
Chr05	irgsp1_rep	CDS	26103593	26103659	.	+	0	Parent=Os05t0524300-01
Chr05	irgsp1_rep	CDS	26103763	26103860	.	+	2	Parent=Os05t0524300-01
Chr05	irgsp1_rep	CDS	26104476	26104548	.	+	0	Parent=Os05t0524300-01
Chr05	irgsp1_rep	CDS	26104642	26104712	.	+	2	Parent=Os05t0524300-01
Chr05	irgsp1_rep	CDS	26104808	26104857	.	+	0	Parent=Os05t0524300-01
Chr05	irgsp1_rep	CDS	26105587	26105699	.	+	1	Parent=Os05t0524300-01
Chr05	irgsp1_rep	CDS	26105786	26105838	.	+	2	Parent=Os05t0524300-01
Chr05	irgsp1_rep	three_prime_UTR	26105839	26106270	.	+	.	Parent=Os05t0524300-01
Chr05	irgsp1_rep	mRNA	26107195	26112398	.	+	.	ID=Os05t0524400-01;Name=Os05t0524400-01;Locus_id=Os05g0524400;Oryzabase Gene Symbol Synonym(s)=OsPFK05%2C PFK05%2C PFK5%2C OsPFK5;Oryzabase Gene Name Synonym(s)=phosphofructokinase 5;Note=Phosphofructokinase family protein.;Transcript_evidence=AK072857 (DDBJ%2C Best hit);ORF_evidence=NP_001147854.1 (RefSeq);GO=Biological Process: glycolysis (GO:0006096),Cellular Component: 6-phosphofructokinase complex (GO:0005945),Molecular Function: 6-phosphofructokinase activity (GO:0003872),Molecular Function: ATP binding (GO:0005524);InterPro=Phosphofructokinase domain (IPR000023),Pyrophosphate-dependent phosphofructokinase TP0108 (IPR012004),Phosphofructokinase (IPR022953);NIAS_FLcDNA=J023139C03;Oryzabase=19613;Expression=AK072857;TENOR=Os05t0524400-01;KEGG=Os05t0524400-01 (EC:2.7.1.11)
Chr05	irgsp1_rep	five_prime_UTR	26107195	26107394	.	+	.	Parent=Os05t0524400-01
Chr05	irgsp1_rep	CDS	26107395	26107712	.	+	0	Parent=Os05t0524400-01
Chr05	irgsp1_rep	CDS	26108356	26108402	.	+	0	Parent=Os05t0524400-01
Chr05	irgsp1_rep	CDS	26108501	26108540	.	+	1	Parent=Os05t0524400-01
Chr05	irgsp1_rep	CDS	26108622	26108684	.	+	0	Parent=Os05t0524400-01
Chr05	irgsp1_rep	CDS	26108770	26108907	.	+	0	Parent=Os05t0524400-01
Chr05	irgsp1_rep	CDS	26109762	26109920	.	+	0	Parent=Os05t0524400-01
Chr05	irgsp1_rep	CDS	26110000	26110053	.	+	0	Parent=Os05t0524400-01
Chr05	irgsp1_rep	CDS	26110213	26110281	.	+	0	Parent=Os05t0524400-01
Chr05	irgsp1_rep	CDS	26110403	26110532	.	+	0	Parent=Os05t0524400-01
Chr05	irgsp1_rep	CDS	26110798	26110838	.	+	2	Parent=Os05t0524400-01
Chr05	irgsp1_rep	CDS	26111022	26111246	.	+	0	Parent=Os05t0524400-01
Chr05	irgsp1_rep	CDS	26111449	26111494	.	+	0	Parent=Os05t0524400-01
Chr05	irgsp1_rep	CDS	26111591	26111742	.	+	2	Parent=Os05t0524400-01
Chr05	irgsp1_rep	CDS	26111911	26112132	.	+	0	Parent=Os05t0524400-01
Chr05	irgsp1_rep	three_prime_UTR	26112133	26112398	.	+	.	Parent=Os05t0524400-01
Chr05	irgsp1_rep	mRNA	26107382	26112359	.	+	.	ID=Os05t0524400-02;Name=Os05t0524400-02;Locus_id=Os05g0524400;Oryzabase Gene Symbol Synonym(s)=OsPFK05%2C PFK05%2C PFK5%2C OsPFK5;Oryzabase Gene Name Synonym(s)=phosphofructokinase 5;Note=Phosphofructokinase family protein.;Transcript_evidence=AK063963 (DDBJ%2C Best hit);ORF_evidence=NP_001147854.1 (RefSeq);GO=Biological Process: glycolysis (GO:0006096),Cellular Component: 6-phosphofructokinase complex (GO:0005945),Molecular Function: 6-phosphofructokinase activity (GO:0003872),Molecular Function: ATP binding (GO:0005524);InterPro=Phosphofructokinase domain (IPR000023),Pyrophosphate-dependent phosphofructokinase TP0108 (IPR012004),Phosphofructokinase (IPR022953);NIAS_FLcDNA=001-123-H12;Oryzabase=19613;Expression=AK063963;TENOR=Os05t0524400-02;KEGG=Os05t0524400-02 (EC:2.7.1.11)
Chr05	irgsp1_rep	five_prime_UTR	26107382	26107394	.	+	.	Parent=Os05t0524400-02
Chr05	irgsp1_rep	CDS	26107395	26107712	.	+	0	Parent=Os05t0524400-02
Chr05	irgsp1_rep	CDS	26108356	26108402	.	+	0	Parent=Os05t0524400-02
Chr05	irgsp1_rep	CDS	26108501	26108540	.	+	1	Parent=Os05t0524400-02
Chr05	irgsp1_rep	CDS	26108622	26108684	.	+	0	Parent=Os05t0524400-02
Chr05	irgsp1_rep	CDS	26108770	26108907	.	+	0	Parent=Os05t0524400-02
Chr05	irgsp1_rep	CDS	26109762	26109920	.	+	0	Parent=Os05t0524400-02
Chr05	irgsp1_rep	CDS	26110000	26110053	.	+	0	Parent=Os05t0524400-02
Chr05	irgsp1_rep	CDS	26110213	26110281	.	+	0	Parent=Os05t0524400-02
Chr05	irgsp1_rep	CDS	26110403	26110532	.	+	0	Parent=Os05t0524400-02
Chr05	irgsp1_rep	CDS	26110798	26110838	.	+	2	Parent=Os05t0524400-02
Chr05	irgsp1_rep	CDS	26111022	26111246	.	+	0	Parent=Os05t0524400-02
Chr05	irgsp1_rep	CDS	26111449	26111494	.	+	0	Parent=Os05t0524400-02
Chr05	irgsp1_rep	CDS	26111591	26111742	.	+	2	Parent=Os05t0524400-02
Chr05	irgsp1_rep	CDS	26111911	26112132	.	+	0	Parent=Os05t0524400-02
Chr05	irgsp1_rep	three_prime_UTR	26112133	26112359	.	+	.	Parent=Os05t0524400-02
Chr05	irgsp1_rep	mRNA	26113277	26117847	.	+	.	ID=Os05t0524500-01;Name=Os05t0524500-01;Locus_id=Os05g0524500;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK073571 (DDBJ%2C Best hit);ORF_evidence=B9FH12 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Malectin-like carbohydrate-binding domain (IPR024788);NIAS_FLcDNA=J033046G16;Expression=AK073571;TENOR=Os05t0524500-01;KEGG=Os05t0524500-01
Chr05	irgsp1_rep	five_prime_UTR	26113277	26113319	.	+	.	Parent=Os05t0524500-01
Chr05	irgsp1_rep	CDS	26113320	26113434	.	+	0	Parent=Os05t0524500-01
Chr05	irgsp1_rep	CDS	26113539	26114091	.	+	2	Parent=Os05t0524500-01
Chr05	irgsp1_rep	CDS	26114199	26114695	.	+	1	Parent=Os05t0524500-01
Chr05	irgsp1_rep	CDS	26114794	26114932	.	+	2	Parent=Os05t0524500-01
Chr05	irgsp1_rep	CDS	26115071	26115142	.	+	1	Parent=Os05t0524500-01
Chr05	irgsp1_rep	CDS	26115233	26115304	.	+	1	Parent=Os05t0524500-01
Chr05	irgsp1_rep	CDS	26115392	26115472	.	+	1	Parent=Os05t0524500-01
Chr05	irgsp1_rep	CDS	26115788	26115954	.	+	1	Parent=Os05t0524500-01
Chr05	irgsp1_rep	CDS	26116040	26116305	.	+	2	Parent=Os05t0524500-01
Chr05	irgsp1_rep	CDS	26116401	26116527	.	+	0	Parent=Os05t0524500-01
Chr05	irgsp1_rep	CDS	26116641	26116709	.	+	2	Parent=Os05t0524500-01
Chr05	irgsp1_rep	CDS	26116817	26117009	.	+	2	Parent=Os05t0524500-01
Chr05	irgsp1_rep	CDS	26117104	26117596	.	+	1	Parent=Os05t0524500-01
Chr05	irgsp1_rep	three_prime_UTR	26117597	26117847	.	+	.	Parent=Os05t0524500-01
Chr05	irgsp1_rep	mRNA	26113303	26117611	.	-	.	ID=Os05t0524525-00;Name=Os05t0524525-00;Locus_id=Os05g0524525;Note=Hypothetical protein.;Transcript_evidence=tplb0062a03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0524525-00
Chr05	irgsp1_rep	five_prime_UTR	26117116	26117611	.	-	.	Parent=Os05t0524525-00
Chr05	irgsp1_rep	five_prime_UTR	26116804	26117024	.	-	.	Parent=Os05t0524525-00
Chr05	irgsp1_rep	five_prime_UTR	26116394	26116579	.	-	.	Parent=Os05t0524525-00
Chr05	irgsp1_rep	five_prime_UTR	26116105	26116296	.	-	.	Parent=Os05t0524525-00
Chr05	irgsp1_rep	five_prime_UTR	26115807	26115987	.	-	.	Parent=Os05t0524525-00
Chr05	irgsp1_rep	five_prime_UTR	26115374	26115492	.	-	.	Parent=Os05t0524525-00
Chr05	irgsp1_rep	five_prime_UTR	26115160	26115288	.	-	.	Parent=Os05t0524525-00
Chr05	irgsp1_rep	five_prime_UTR	26114793	26114930	.	-	.	Parent=Os05t0524525-00
Chr05	irgsp1_rep	five_prime_UTR	26114427	26114694	.	-	.	Parent=Os05t0524525-00
Chr05	irgsp1_rep	CDS	26114188	26114426	.	-	0	Parent=Os05t0524525-00
Chr05	irgsp1_rep	CDS	26113817	26114078	.	-	1	Parent=Os05t0524525-00
Chr05	irgsp1_rep	three_prime_UTR	26113556	26113816	.	-	.	Parent=Os05t0524525-00
Chr05	irgsp1_rep	three_prime_UTR	26113303	26113451	.	-	.	Parent=Os05t0524525-00
Chr05	irgsp1_rep	mRNA	26120321	26121123	.	+	.	ID=Os05t0524550-00;Name=Os05t0524550-00;Locus_id=Os05g0524550;Note=Malectin-like carbohydrate-binding domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001056092.2 (RefSeq);InterPro=Malectin-like carbohydrate-binding domain (IPR024788);TENOR=Os05t0524550-00
Chr05	irgsp1_rep	CDS	26120321	26120450	.	+	0	Parent=Os05t0524550-00
Chr05	irgsp1_rep	CDS	26120567	26121123	.	+	2	Parent=Os05t0524550-00
Chr05	irgsp1_rep	mRNA	26120568	26127026	.	-	.	ID=Os05t0524575-00;Name=Os05t0524575-00;Locus_id=Os05g0524575;Note=Hypothetical protein.;Transcript_evidence=tplb0062a03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0524575-00
Chr05	irgsp1_rep	five_prime_UTR	26126663	26127026	.	-	.	Parent=Os05t0524575-00
Chr05	irgsp1_rep	CDS	26126551	26126662	.	-	0	Parent=Os05t0524575-00
Chr05	irgsp1_rep	CDS	26126338	26126456	.	-	2	Parent=Os05t0524575-00
Chr05	irgsp1_rep	three_prime_UTR	26126236	26126337	.	-	.	Parent=Os05t0524575-00
Chr05	irgsp1_rep	three_prime_UTR	26125877	26126050	.	-	.	Parent=Os05t0524575-00
Chr05	irgsp1_rep	three_prime_UTR	26125552	26125774	.	-	.	Parent=Os05t0524575-00
Chr05	irgsp1_rep	three_prime_UTR	26125287	26125440	.	-	.	Parent=Os05t0524575-00
Chr05	irgsp1_rep	three_prime_UTR	26124951	26125187	.	-	.	Parent=Os05t0524575-00
Chr05	irgsp1_rep	three_prime_UTR	26122691	26122828	.	-	.	Parent=Os05t0524575-00
Chr05	irgsp1_rep	three_prime_UTR	26121933	26122452	.	-	.	Parent=Os05t0524575-00
Chr05	irgsp1_rep	three_prime_UTR	26120568	26121100	.	-	.	Parent=Os05t0524575-00
Chr05	irgsp1_rep	mRNA	26121944	26124034	.	+	.	ID=Os05t0524600-00;Name=Os05t0524600-00;Locus_id=Os05g0524600;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FL84 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Malectin-like carbohydrate-binding domain (IPR024788);TENOR=Os05t0524600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	26121944	26122445	.	+	0	Parent=Os05t0524600-00
Chr05	irgsp1_rep	CDS	26122693	26122831	.	+	2	Parent=Os05t0524600-00
Chr05	irgsp1_rep	CDS	26123400	26123471	.	+	1	Parent=Os05t0524600-00
Chr05	irgsp1_rep	CDS	26123560	26123631	.	+	1	Parent=Os05t0524600-00
Chr05	irgsp1_rep	CDS	26123893	26124034	.	+	1	Parent=Os05t0524600-00
Chr05	irgsp1_rep	mRNA	26124213	26124607	.	-	.	ID=Os05t0524666-00;Name=Os05t0524666-00;Locus_id=Os05g0524666;Note=Similar to Glycine-rich protein 2b.;Transcript_evidence=EU971110 (DDBJ);ORF_evidence=B6TP60 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677);InterPro=Cold-shock protein%2C DNA-binding (IPR002059),Cold shock protein (IPR011129),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),Cold-shock conserved site (IPR019844);TENOR=Os05t0524666-00
Chr05	irgsp1_rep	five_prime_UTR	26124606	26124607	.	-	.	Parent=Os05t0524666-00
Chr05	irgsp1_rep	CDS	26124213	26124605	.	-	0	Parent=Os05t0524666-00
Chr05	irgsp1_rep	mRNA	26125520	26126219	.	+	.	ID=Os05t0524732-00;Name=Os05t0524732-00;Locus_id=Os05g0524732;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001056092.2 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os05t0524732-00
Chr05	irgsp1_rep	CDS	26125520	26125783	.	+	0	Parent=Os05t0524732-00
Chr05	irgsp1_rep	CDS	26125885	26126011	.	+	0	Parent=Os05t0524732-00
Chr05	irgsp1_rep	CDS	26126082	26126150	.	+	2	Parent=Os05t0524732-00
Chr05	irgsp1_rep	CDS	26126212	26126219	.	+	2	Parent=Os05t0524732-00
Chr05	irgsp1_rep	mRNA	26132539	26133467	.	+	.	ID=Os05t0524800-00;Name=Os05t0524800-00;Locus_id=Os05g0524800;Note=Malectin-like carbohydrate-binding domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2Y6P0 (UniProt);InterPro=Malectin-like carbohydrate-binding domain (IPR024788);TENOR=Os05t0524800-00
Chr05	irgsp1_rep	CDS	26132539	26132577	.	+	0	Parent=Os05t0524800-00
Chr05	irgsp1_rep	CDS	26132742	26132808	.	+	0	Parent=Os05t0524800-00
Chr05	irgsp1_rep	CDS	26132911	26133467	.	+	2	Parent=Os05t0524800-00
Chr05	irgsp1_rep	mRNA	26132912	26139476	.	-	.	ID=Os05t0524900-00;Name=Os05t0524900-00;Locus_id=Os05g0524900;Note=Hypothetical protein.;Transcript_evidence=tplb0062a03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0524900-00
Chr05	irgsp1_rep	five_prime_UTR	26138946	26139476	.	-	.	Parent=Os05t0524900-00
Chr05	irgsp1_rep	five_prime_UTR	26138643	26138851	.	-	.	Parent=Os05t0524900-00
Chr05	irgsp1_rep	five_prime_UTR	26137990	26138182	.	-	.	Parent=Os05t0524900-00
Chr05	irgsp1_rep	five_prime_UTR	26137690	26137905	.	-	.	Parent=Os05t0524900-00
Chr05	irgsp1_rep	five_prime_UTR	26137415	26137581	.	-	.	Parent=Os05t0524900-00
Chr05	irgsp1_rep	five_prime_UTR	26137218	26137309	.	-	.	Parent=Os05t0524900-00
Chr05	irgsp1_rep	five_prime_UTR	26137052	26137123	.	-	.	Parent=Os05t0524900-00
Chr05	irgsp1_rep	five_prime_UTR	26136658	26136879	.	-	.	Parent=Os05t0524900-00
Chr05	irgsp1_rep	five_prime_UTR	26136144	26136551	.	-	.	Parent=Os05t0524900-00
Chr05	irgsp1_rep	CDS	26136082	26136143	.	-	0	Parent=Os05t0524900-00
Chr05	irgsp1_rep	CDS	26132912	26133492	.	-	1	Parent=Os05t0524900-00
Chr05	irgsp1_rep	mRNA	26136041	26139443	.	+	.	ID=Os05t0525000-00;Name=Os05t0525000-00;Locus_id=Os05g0525000;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FH13 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635),Malectin-like carbohydrate-binding domain (IPR024788);TENOR=Os05t0525000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	26136041	26136548	.	+	0	Parent=Os05t0525000-00
Chr05	irgsp1_rep	CDS	26136656	26136788	.	+	2	Parent=Os05t0525000-00
Chr05	irgsp1_rep	CDS	26136876	26136947	.	+	1	Parent=Os05t0525000-00
Chr05	irgsp1_rep	CDS	26137039	26137110	.	+	1	Parent=Os05t0525000-00
Chr05	irgsp1_rep	CDS	26137209	26137273	.	+	1	Parent=Os05t0525000-00
Chr05	irgsp1_rep	CDS	26137625	26137914	.	+	2	Parent=Os05t0525000-00
Chr05	irgsp1_rep	CDS	26138004	26138130	.	+	0	Parent=Os05t0525000-00
Chr05	irgsp1_rep	CDS	26138488	26138556	.	+	2	Parent=Os05t0525000-00
Chr05	irgsp1_rep	CDS	26139019	26139443	.	+	2	Parent=Os05t0525000-00
Chr05	irgsp1_rep	mRNA	26143266	26147537	.	-	.	ID=Os05t0525200-00;Name=Os05t0525200-00;Locus_id=Os05g0525200;Note=Hypothetical protein.;Transcript_evidence=tplb0062a03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0525200-00
Chr05	irgsp1_rep	five_prime_UTR	26147041	26147537	.	-	.	Parent=Os05t0525200-00
Chr05	irgsp1_rep	five_prime_UTR	26146722	26146947	.	-	.	Parent=Os05t0525200-00
Chr05	irgsp1_rep	five_prime_UTR	26146334	26146499	.	-	.	Parent=Os05t0525200-00
Chr05	irgsp1_rep	five_prime_UTR	26146000	26146240	.	-	.	Parent=Os05t0525200-00
Chr05	irgsp1_rep	five_prime_UTR	26145726	26145876	.	-	.	Parent=Os05t0525200-00
Chr05	irgsp1_rep	five_prime_UTR	26145528	26145618	.	-	.	Parent=Os05t0525200-00
Chr05	irgsp1_rep	five_prime_UTR	26145307	26145436	.	-	.	Parent=Os05t0525200-00
Chr05	irgsp1_rep	five_prime_UTR	26144791	26144980	.	-	.	Parent=Os05t0525200-00
Chr05	irgsp1_rep	five_prime_UTR	26144393	26144683	.	-	.	Parent=Os05t0525200-00
Chr05	irgsp1_rep	CDS	26144208	26144392	.	-	0	Parent=Os05t0525200-00
Chr05	irgsp1_rep	CDS	26143500	26144041	.	-	1	Parent=Os05t0525200-00
Chr05	irgsp1_rep	CDS	26143266	26143383	.	-	2	Parent=Os05t0525200-00
Chr05	irgsp1_rep	mRNA	26143305	26144729	.	+	.	ID=Os05t0525400-00;Name=Os05t0525400-00;Locus_id=Os05g0525400;Note=Malectin-like carbohydrate-binding domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8B089 (UniProt);InterPro=Malectin-like carbohydrate-binding domain (IPR024788);TENOR=Os05t0525400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	26143305	26143395	.	+	0	Parent=Os05t0525400-00
Chr05	irgsp1_rep	CDS	26143505	26144057	.	+	2	Parent=Os05t0525400-00
Chr05	irgsp1_rep	CDS	26144225	26144729	.	+	1	Parent=Os05t0525400-00
Chr05	irgsp1_rep	mRNA	26144827	26146593	.	+	.	ID=Os05t0525501-00;Name=Os05t0525501-00;Locus_id=Os05g0525501;Note=Serine-threonine/tyrosine-protein kinase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FL86 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);TENOR=Os05t0525501-00
Chr05	irgsp1_rep	CDS	26144827	26144957	.	+	0	Parent=Os05t0525501-00
Chr05	irgsp1_rep	CDS	26145200	26145271	.	+	1	Parent=Os05t0525501-00
Chr05	irgsp1_rep	CDS	26145352	26145423	.	+	1	Parent=Os05t0525501-00
Chr05	irgsp1_rep	CDS	26145519	26145583	.	+	1	Parent=Os05t0525501-00
Chr05	irgsp1_rep	CDS	26145942	26146231	.	+	2	Parent=Os05t0525501-00
Chr05	irgsp1_rep	CDS	26146567	26146593	.	+	0	Parent=Os05t0525501-00
Chr05	irgsp1_rep	mRNA	26153207	26157648	.	+	.	ID=Os05t0525600-00;Name=Os05t0525600-00;Locus_id=Os05g0525600;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK366132 (DDBJ);ORF_evidence=NP_001056096.2 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635),Malectin-like carbohydrate-binding domain (IPR024788);Oryzabase=19678;TENOR=Os05t0525600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	26153207	26153420	.	+	0	Parent=Os05t0525600-00
Chr05	irgsp1_rep	CDS	26153503	26154277	.	+	2	Parent=Os05t0525600-00
Chr05	irgsp1_rep	CDS	26154415	26154698	.	+	1	Parent=Os05t0525600-00
Chr05	irgsp1_rep	CDS	26154888	26155026	.	+	2	Parent=Os05t0525600-00
Chr05	irgsp1_rep	CDS	26155111	26155182	.	+	1	Parent=Os05t0525600-00
Chr05	irgsp1_rep	CDS	26155265	26155336	.	+	1	Parent=Os05t0525600-00
Chr05	irgsp1_rep	CDS	26155514	26155594	.	+	1	Parent=Os05t0525600-00
Chr05	irgsp1_rep	CDS	26155682	26155842	.	+	1	Parent=Os05t0525600-00
Chr05	irgsp1_rep	CDS	26155950	26156212	.	+	2	Parent=Os05t0525600-00
Chr05	irgsp1_rep	CDS	26156449	26156575	.	+	0	Parent=Os05t0525600-00
Chr05	irgsp1_rep	CDS	26156762	26156830	.	+	2	Parent=Os05t0525600-00
Chr05	irgsp1_rep	CDS	26156942	26157134	.	+	2	Parent=Os05t0525600-00
Chr05	irgsp1_rep	CDS	26157234	26157648	.	+	1	Parent=Os05t0525600-00
Chr05	irgsp1_rep	mRNA	26153505	26157740	.	-	.	ID=Os05t0525701-00;Name=Os05t0525701-00;Locus_id=Os05g0525701;Note=Hypothetical protein.;Transcript_evidence=tplb0062a03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0525701-00
Chr05	irgsp1_rep	five_prime_UTR	26157414	26157740	.	-	.	Parent=Os05t0525701-00
Chr05	irgsp1_rep	CDS	26157243	26157413	.	-	0	Parent=Os05t0525701-00
Chr05	irgsp1_rep	CDS	26156998	26157144	.	-	0	Parent=Os05t0525701-00
Chr05	irgsp1_rep	three_prime_UTR	26156940	26156997	.	-	.	Parent=Os05t0525701-00
Chr05	irgsp1_rep	three_prime_UTR	26156760	26156821	.	-	.	Parent=Os05t0525701-00
Chr05	irgsp1_rep	three_prime_UTR	26156457	26156568	.	-	.	Parent=Os05t0525701-00
Chr05	irgsp1_rep	three_prime_UTR	26156034	26156218	.	-	.	Parent=Os05t0525701-00
Chr05	irgsp1_rep	three_prime_UTR	26155663	26155894	.	-	.	Parent=Os05t0525701-00
Chr05	irgsp1_rep	three_prime_UTR	26155488	26155579	.	-	.	Parent=Os05t0525701-00
Chr05	irgsp1_rep	three_prime_UTR	26154869	26155148	.	-	.	Parent=Os05t0525701-00
Chr05	irgsp1_rep	three_prime_UTR	26154407	26154676	.	-	.	Parent=Os05t0525701-00
Chr05	irgsp1_rep	three_prime_UTR	26153505	26154262	.	-	.	Parent=Os05t0525701-00
Chr05	irgsp1_rep	mRNA	26159275	26167449	.	+	.	ID=Os05t0525800-00;Name=Os05t0525800-00;Locus_id=Os05g0525800;CGSNL Gene Symbol=RLCK190;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 190;Oryzabase Gene Symbol Synonym(s)=OsRLCK190;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 190;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK333896 (DDBJ);ORF_evidence=Q65X94 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Malectin-like carbohydrate-binding domain (IPR024788);Oryzabase=18890;TENOR=Os05t0525800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	26159275	26159310	.	+	.	Parent=Os05t0525800-00
Chr05	irgsp1_rep	CDS	26159311	26159398	.	+	0	Parent=Os05t0525800-00
Chr05	irgsp1_rep	CDS	26159524	26160076	.	+	2	Parent=Os05t0525800-00
Chr05	irgsp1_rep	CDS	26160205	26160701	.	+	1	Parent=Os05t0525800-00
Chr05	irgsp1_rep	CDS	26164758	26164896	.	+	2	Parent=Os05t0525800-00
Chr05	irgsp1_rep	CDS	26165018	26165089	.	+	1	Parent=Os05t0525800-00
Chr05	irgsp1_rep	CDS	26165178	26165249	.	+	1	Parent=Os05t0525800-00
Chr05	irgsp1_rep	CDS	26165335	26165415	.	+	1	Parent=Os05t0525800-00
Chr05	irgsp1_rep	CDS	26165555	26165712	.	+	1	Parent=Os05t0525800-00
Chr05	irgsp1_rep	CDS	26165814	26166082	.	+	2	Parent=Os05t0525800-00
Chr05	irgsp1_rep	CDS	26166157	26166313	.	+	0	Parent=Os05t0525800-00
Chr05	irgsp1_rep	CDS	26166598	26166668	.	+	2	Parent=Os05t0525800-00
Chr05	irgsp1_rep	three_prime_UTR	26166669	26166815	.	+	.	Parent=Os05t0525800-00
Chr05	irgsp1_rep	three_prime_UTR	26166928	26167449	.	+	.	Parent=Os05t0525800-00
Chr05	irgsp1_rep	mRNA	26159525	26167410	.	-	.	ID=Os05t0525850-00;Name=Os05t0525850-00;Locus_id=Os05g0525850;Note=Hypothetical protein.;Transcript_evidence=tplb0062a03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0525850-00
Chr05	irgsp1_rep	five_prime_UTR	26167231	26167410	.	-	.	Parent=Os05t0525850-00
Chr05	irgsp1_rep	CDS	26166967	26167230	.	-	0	Parent=Os05t0525850-00
Chr05	irgsp1_rep	three_prime_UTR	26166940	26166966	.	-	.	Parent=Os05t0525850-00
Chr05	irgsp1_rep	three_prime_UTR	26166580	26166829	.	-	.	Parent=Os05t0525850-00
Chr05	irgsp1_rep	three_prime_UTR	26166146	26166302	.	-	.	Parent=Os05t0525850-00
Chr05	irgsp1_rep	three_prime_UTR	26165841	26166073	.	-	.	Parent=Os05t0525850-00
Chr05	irgsp1_rep	three_prime_UTR	26165574	26165708	.	-	.	Parent=Os05t0525850-00
Chr05	irgsp1_rep	three_prime_UTR	26165318	26165430	.	-	.	Parent=Os05t0525850-00
Chr05	irgsp1_rep	three_prime_UTR	26165191	26165233	.	-	.	Parent=Os05t0525850-00
Chr05	irgsp1_rep	three_prime_UTR	26165018	26165101	.	-	.	Parent=Os05t0525850-00
Chr05	irgsp1_rep	three_prime_UTR	26164760	26164896	.	-	.	Parent=Os05t0525850-00
Chr05	irgsp1_rep	three_prime_UTR	26160183	26160704	.	-	.	Parent=Os05t0525850-00
Chr05	irgsp1_rep	three_prime_UTR	26159525	26160054	.	-	.	Parent=Os05t0525850-00
Chr05	irgsp1_rep	mRNA	26171097	26172343	.	-	.	ID=Os05t0525900-01;Name=Os05t0525900-01;Locus_id=Os05g0525900;CGSNL Gene Symbol=C3H37;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37;Oryzabase Gene Symbol Synonym(s)=OsC3H37%2C OsTZF7%2C OsCCCH-Zn-1;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 37%2C Tandem zinc finger protein 7;Note=Similar to Zing finger transcription factor PEI1.;Transcript_evidence=AK108249 (DDBJ%2C Best hit);ORF_evidence=NP_001147375.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=002-140-H10;Oryzabase=8602;Expression=AK108249;TENOR=Os05t0525900-01;KEGG=Os05t0525900-01
Chr05	irgsp1_rep	five_prime_UTR	26172262	26172343	.	-	.	Parent=Os05t0525900-01
Chr05	irgsp1_rep	CDS	26171494	26172261	.	-	0	Parent=Os05t0525900-01
Chr05	irgsp1_rep	three_prime_UTR	26171097	26171493	.	-	.	Parent=Os05t0525900-01
Chr05	irgsp1_rep	mRNA	26175584	26177039	.	+	.	ID=Os05t0526200-01;Name=Os05t0526200-01;Locus_id=Os05g0526200;Note=Similar to Calcium homeostasis regulator CHoR1.;Transcript_evidence=AK071678 (DDBJ%2C Best hit);ORF_evidence=B6TZN2 (UniProt);NIAS_FLcDNA=J023107E19;Expression=AK071678;TENOR=Os05t0526200-01;KEGG=Os05t0526200-01
Chr05	irgsp1_rep	five_prime_UTR	26175584	26175615	.	+	.	Parent=Os05t0526200-01
Chr05	irgsp1_rep	CDS	26175616	26175945	.	+	0	Parent=Os05t0526200-01
Chr05	irgsp1_rep	CDS	26176071	26176235	.	+	0	Parent=Os05t0526200-01
Chr05	irgsp1_rep	CDS	26176352	26176672	.	+	0	Parent=Os05t0526200-01
Chr05	irgsp1_rep	three_prime_UTR	26176673	26177039	.	+	.	Parent=Os05t0526200-01
Chr05	irgsp1_rep	mRNA	26177374	26179782	.	+	.	ID=Os05t0526300-01;Name=Os05t0526300-01;Locus_id=Os05g0526300;Oryzabase Gene Symbol Synonym(s)=OsFbox268%2C Os_F0080;Oryzabase Gene Name Synonym(s)=F-box protein 268;Note=Similar to F-box domain containing protein.;Transcript_evidence=AK069798 (DDBJ%2C Best hit);ORF_evidence=B4FH72 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023026H21;Oryzabase=17049;TENOR=Os05t0526300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	26177374	26177532	.	+	.	Parent=Os05t0526300-01
Chr05	irgsp1_rep	CDS	26177533	26177750	.	+	0	Parent=Os05t0526300-01
Chr05	irgsp1_rep	CDS	26178369	26178520	.	+	1	Parent=Os05t0526300-01
Chr05	irgsp1_rep	CDS	26178802	26178889	.	+	2	Parent=Os05t0526300-01
Chr05	irgsp1_rep	CDS	26178964	26178964	.	+	1	Parent=Os05t0526300-01
Chr05	irgsp1_rep	three_prime_UTR	26178965	26179169	.	+	.	Parent=Os05t0526300-01
Chr05	irgsp1_rep	three_prime_UTR	26179248	26179399	.	+	.	Parent=Os05t0526300-01
Chr05	irgsp1_rep	three_prime_UTR	26179588	26179782	.	+	.	Parent=Os05t0526300-01
Chr05	irgsp1_rep	mRNA	26177405	26179773	.	+	.	ID=Os05t0526300-02;Name=Os05t0526300-02;Locus_id=Os05g0526300;Oryzabase Gene Symbol Synonym(s)=OsFbox268%2C Os_F0080;Oryzabase Gene Name Synonym(s)=F-box protein 268;Note=Similar to F-box domain containing protein.;Transcript_evidence=AK099438 (DDBJ%2C Best hit);ORF_evidence=B4FH72 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013020D09;Oryzabase=17049;Expression=AK099438;TENOR=Os05t0526300-02;KEGG=Os05t0526300-02
Chr05	irgsp1_rep	five_prime_UTR	26177405	26177532	.	+	.	Parent=Os05t0526300-02
Chr05	irgsp1_rep	CDS	26177533	26177750	.	+	0	Parent=Os05t0526300-02
Chr05	irgsp1_rep	CDS	26178369	26178520	.	+	1	Parent=Os05t0526300-02
Chr05	irgsp1_rep	CDS	26178802	26178889	.	+	2	Parent=Os05t0526300-02
Chr05	irgsp1_rep	CDS	26178967	26179169	.	+	1	Parent=Os05t0526300-02
Chr05	irgsp1_rep	CDS	26179248	26179399	.	+	2	Parent=Os05t0526300-02
Chr05	irgsp1_rep	CDS	26179588	26179701	.	+	0	Parent=Os05t0526300-02
Chr05	irgsp1_rep	three_prime_UTR	26179702	26179773	.	+	.	Parent=Os05t0526300-02
Chr05	irgsp1_rep	mRNA	26180148	26182311	.	-	.	ID=Os05t0526400-01;Name=Os05t0526400-01;Locus_id=Os05g0526400;Note=Reticulon family protein.;Transcript_evidence=AK061354 (DDBJ%2C Best hit),AK104245 (DDBJ%2C Best hit),AK121753 (DDBJ%2C Best hit);ORF_evidence=B6T616 (UniProt);GO=Cellular Component: endoplasmic reticulum (GO:0005783);InterPro=Reticulon (IPR003388);NIAS_FLcDNA=006-303-G11,006-308-D08,J033087P17;Expression=AK061354;TENOR=Os05t0526400-01;KEGG=Os05t0526400-01
Chr05	irgsp1_rep	five_prime_UTR	26182232	26182311	.	-	.	Parent=Os05t0526400-01
Chr05	irgsp1_rep	CDS	26182036	26182231	.	-	0	Parent=Os05t0526400-01
Chr05	irgsp1_rep	CDS	26181435	26181615	.	-	2	Parent=Os05t0526400-01
Chr05	irgsp1_rep	CDS	26180837	26180978	.	-	1	Parent=Os05t0526400-01
Chr05	irgsp1_rep	CDS	26180666	26180735	.	-	0	Parent=Os05t0526400-01
Chr05	irgsp1_rep	CDS	26180423	26180589	.	-	2	Parent=Os05t0526400-01
Chr05	irgsp1_rep	three_prime_UTR	26180148	26180422	.	-	.	Parent=Os05t0526400-01
Chr05	irgsp1_rep	mRNA	26181489	26182102	.	+	.	ID=Os05t0526466-00;Name=Os05t0526466-00;Locus_id=Os05g0526466;Note=Non-protein coding transcript.;Transcript_evidence=BT085265 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0526466-00
Chr05	irgsp1_rep	exon	26181489	26181615	.	+	.	Parent=Os05t0526466-00
Chr05	irgsp1_rep	exon	26182036	26182102	.	+	.	Parent=Os05t0526466-00
Chr05	irgsp1_rep	mRNA	26183558	26183625	.	+	.	ID=Os05t0526532-00;Name=Os05t0526532-00;Locus_id=Os05g0526532;Note=Non-protein coding transcript.;Transcript_evidence=X06283 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0526532-00
Chr05	irgsp1_rep	exon	26183558	26183625	.	+	.	Parent=Os05t0526532-00
Chr05	irgsp1_rep	mRNA	26186333	26187544	.	+	.	ID=Os05t0526600-00;Name=Os05t0526600-00;Locus_id=Os05g0526600;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=BT062385 (DDBJ);ORF_evidence=NP_001147253.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os05t0526600-00;KEGG=Os05t0526600-00
Chr05	irgsp1_rep	five_prime_UTR	26186333	26186579	.	+	.	Parent=Os05t0526600-00
Chr05	irgsp1_rep	CDS	26186580	26187203	.	+	0	Parent=Os05t0526600-00
Chr05	irgsp1_rep	three_prime_UTR	26187204	26187212	.	+	.	Parent=Os05t0526600-00
Chr05	irgsp1_rep	three_prime_UTR	26187338	26187544	.	+	.	Parent=Os05t0526600-00
Chr05	irgsp1_rep	mRNA	26189646	26190616	.	-	.	ID=Os05t0526700-01;Name=Os05t0526700-01;Locus_id=Os05g0526700;Oryzabase Gene Symbol Synonym(s)=5C700;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK108457 (DDBJ%2C Best hit);ORF_evidence=NP_001147657.1 (RefSeq);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=002-143-D04;Oryzabase=22775;Expression=AK108457;TENOR=Os05t0526700-01;KEGG=Os05t0526700-01
Chr05	irgsp1_rep	five_prime_UTR	26190591	26190616	.	-	.	Parent=Os05t0526700-01
Chr05	irgsp1_rep	CDS	26189829	26190590	.	-	0	Parent=Os05t0526700-01
Chr05	irgsp1_rep	three_prime_UTR	26189646	26189828	.	-	.	Parent=Os05t0526700-01
Chr05	irgsp1_rep	mRNA	26192929	26194748	.	+	.	ID=Os05t0526800-01;Name=Os05t0526800-01;Locus_id=Os05g0526800;CGSNL Gene Symbol=UGT706D3;CGSNL Gene Name=UDP-DEPENDENT GLYCOSYLTRANSFERASE 706D3;Oryzabase Gene Symbol Synonym(s)=OsUGT706D3;Oryzabase Gene Name Synonym(s)=UDP-dependent glycosyltransferase 706D3;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK066551 (DDBJ%2C Best hit);ORF_evidence=NP_001149283.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J013074J04;Oryzabase=22220;Expression=AK066551;TENOR=Os05t0526800-01;KEGG=Os05t0526800-01
Chr05	irgsp1_rep	five_prime_UTR	26192929	26193046	.	+	.	Parent=Os05t0526800-01
Chr05	irgsp1_rep	CDS	26193047	26194489	.	+	0	Parent=Os05t0526800-01
Chr05	irgsp1_rep	three_prime_UTR	26194490	26194748	.	+	.	Parent=Os05t0526800-01
Chr05	irgsp1_rep	mRNA	26196244	26198014	.	+	.	ID=Os05t0526900-01;Name=Os05t0526900-01;Locus_id=Os05g0526900;CGSNL Gene Symbol=UGT706D2;CGSNL Gene Name=UDP-DEPENDENT GLYCOSYLTRANSFERASE 706D2;Oryzabase Gene Symbol Synonym(s)=OsUGT706D2;Oryzabase Gene Name Synonym(s)=UDP-dependent glycosyltransferase 706D2;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK287423 (DDBJ%2C Best hit);ORF_evidence=NP_001149283.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J043006D16;Oryzabase=22221;TENOR=Os05t0526900-01;KEGG=Os05t0526900-01
Chr05	irgsp1_rep	five_prime_UTR	26196244	26196310	.	+	.	Parent=Os05t0526900-01
Chr05	irgsp1_rep	CDS	26196311	26197744	.	+	0	Parent=Os05t0526900-01
Chr05	irgsp1_rep	three_prime_UTR	26197745	26198014	.	+	.	Parent=Os05t0526900-01
Chr05	irgsp1_rep	mRNA	26198411	26200034	.	-	.	ID=Os05t0527000-01;Name=Os05t0527000-01;Locus_id=Os05g0527000;CGSNL Gene Symbol=UGT706C3;CGSNL Gene Name=UDP-DEPENDENT GLYCOSYLTRANSFERASE 706C3;Oryzabase Gene Symbol Synonym(s)=OsUGT706C3;Oryzabase Gene Name Synonym(s)=UDP-dependent glycosyltransferase 706C3;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK240740 (DDBJ%2C Best hit);ORF_evidence=B6TEH8 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J043034G22;Oryzabase=22222;TENOR=Os05t0527000-01;KEGG=Os05t0527000-01
Chr05	irgsp1_rep	five_prime_UTR	26199968	26200034	.	-	.	Parent=Os05t0527000-01
Chr05	irgsp1_rep	CDS	26198549	26199967	.	-	0	Parent=Os05t0527000-01
Chr05	irgsp1_rep	three_prime_UTR	26198411	26198548	.	-	.	Parent=Os05t0527000-01
Chr05	irgsp1_rep	mRNA	26201350	26202768	.	-	.	ID=Os05t0527100-01;Name=Os05t0527100-01;Locus_id=Os05g0527100;RAP-DB Gene Symbol Synonym(s)=LTG5;RAP-DB Gene Name Synonym(s)=Low Temperature Growth 5;CGSNL Gene Symbol=UGT706C4;CGSNL Gene Name=UDP-DEPENDENT GLYCOSYLTRANSFERASE 706C4;Oryzabase Gene Symbol Synonym(s)=OsUGT706C4;Oryzabase Gene Name Synonym(s)=UDP-dependent glycosyltransferase 706C4;Note=UDP-glucosyltransferase%2C Cold tolerance (wild rice);Transcript_evidence=ab initio prediction;ORF_evidence=Q65X83;GO=Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213),UDP-glycosyltransferase family%2C conserved site (IPR035595);Manual Curation=August 19%2C 2020;Literature_PMID=32762649;Oryzabase=22223;TENOR=Os05t0527100-00
Chr05	irgsp1_rep	CDS	26201350	26202768	.	-	0	Parent=Os05t0527100-01
Chr05	irgsp1_rep	mRNA	26205975	26206315	.	-	.	ID=Os05t0527200-00;Name=Os05t0527200-00;Locus_id=Os05g0527200;Note=Similar to anthocyanidin 5%2C3-O-glucosyltransferase.;Transcript_evidence=CT836478 (DDBJ%2C Best hit);ORF_evidence=NP_001149283.1 (RefSeq);TENOR=Os05t0527200-00;KEGG=Os05t0527200-00
Chr05	irgsp1_rep	CDS	26206154	26206315	.	-	0	Parent=Os05t0527200-00
Chr05	irgsp1_rep	three_prime_UTR	26206112	26206153	.	-	.	Parent=Os05t0527200-00
Chr05	irgsp1_rep	three_prime_UTR	26205975	26206104	.	-	.	Parent=Os05t0527200-00
Chr05	irgsp1_rep	mRNA	26214287	26214626	.	+	.	ID=Os05t0527333-00;Name=Os05t0527333-00;Locus_id=Os05g0527333;Note=Non-protein coding transcript.;Transcript_evidence=CT836380 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os05t0527333-00
Chr05	irgsp1_rep	exon	26214287	26214626	.	+	.	Parent=Os05t0527333-00
Chr05	irgsp1_rep	mRNA	26217303	26218198	.	-	.	ID=Os05t0527600-00;Name=Os05t0527600-00;Locus_id=Os05g0527600;CGSNL Gene Symbol=UGT706J1;CGSNL Gene Name=UDP-DEPENDENT GLYCOSYLTRANSFERASE 706J1;Oryzabase Gene Symbol Synonym(s)=OsUGT706J1;Oryzabase Gene Name Synonym(s)=UDP-dependent glycosyltransferase 706J1;Note=Similar to anthocyanidin 5%2C3-O-glucosyltransferase.;Transcript_evidence=AK369560 (DDBJ);ORF_evidence=NP_001149283.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);Oryzabase=22224;TENOR=Os05t0527600-00
Chr05	irgsp1_rep	five_prime_UTR	26218155	26218198	.	-	.	Parent=Os05t0527600-00
Chr05	irgsp1_rep	CDS	26217303	26218154	.	-	0	Parent=Os05t0527600-00
Chr05	irgsp1_rep	mRNA	26223422	26224327	.	-	.	ID=Os05t0527700-01;Name=Os05t0527700-01;Locus_id=Os05g0527700;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK111246 (DDBJ%2C Best hit);ORF_evidence=B9FL91 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=002-180-D07;Expression=AK111246;TENOR=Os05t0527700-01;KEGG=Os05t0527700-01
Chr05	irgsp1_rep	five_prime_UTR	26224251	26224327	.	-	.	Parent=Os05t0527700-01
Chr05	irgsp1_rep	CDS	26223540	26224250	.	-	0	Parent=Os05t0527700-01
Chr05	irgsp1_rep	three_prime_UTR	26223422	26223539	.	-	.	Parent=Os05t0527700-01
Chr05	irgsp1_rep	mRNA	26225976	26227661	.	-	.	ID=Os05t0527800-01;Name=Os05t0527800-01;Locus_id=Os05g0527800;CGSNL Gene Symbol=UGT706G6;CGSNL Gene Name=UDP-DEPENDENT GLYCOSYLTRANSFERASE 706G6;Oryzabase Gene Symbol Synonym(s)=OsUGT706G6;Oryzabase Gene Name Synonym(s)=UDP-dependent glycosyltransferase 706G6;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK060997 (DDBJ%2C Best hit);ORF_evidence=A2Y6R1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=006-203-E09;Oryzabase=22225;Expression=AK060997;TENOR=Os05t0527800-01;KEGG=Os05t0527800-01
Chr05	irgsp1_rep	five_prime_UTR	26227602	26227661	.	-	.	Parent=Os05t0527800-01
Chr05	irgsp1_rep	CDS	26226165	26227601	.	-	0	Parent=Os05t0527800-01
Chr05	irgsp1_rep	three_prime_UTR	26225976	26226164	.	-	.	Parent=Os05t0527800-01
Chr05	irgsp1_rep	mRNA	26225665	26227087	.	-	.	ID=Os05t0527800-02;Name=Os05t0527800-02;Locus_id=Os05g0527800;CGSNL Gene Symbol=UGT706G6;CGSNL Gene Name=UDP-DEPENDENT GLYCOSYLTRANSFERASE 706G6;Oryzabase Gene Symbol Synonym(s)=OsUGT706G6;Oryzabase Gene Name Synonym(s)=UDP-dependent glycosyltransferase 706G6;Note=Similar to Anthocyanidin 5%2C3-O-glucosyltransferase.;Transcript_evidence=AK068336 (DDBJ%2C Best hit);ORF_evidence=B4FG90 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J013149H05;Oryzabase=22225;TENOR=Os05t0527800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	26227086	26227087	.	-	.	Parent=Os05t0527800-02
Chr05	irgsp1_rep	CDS	26226165	26227085	.	-	0	Parent=Os05t0527800-02
Chr05	irgsp1_rep	three_prime_UTR	26226021	26226164	.	-	.	Parent=Os05t0527800-02
Chr05	irgsp1_rep	three_prime_UTR	26225665	26225816	.	-	.	Parent=Os05t0527800-02
Chr05	irgsp1_rep	mRNA	26235609	26237122	.	-	.	ID=Os05t0527900-01;Name=Os05t0527900-01;Locus_id=Os05g0527900;CGSNL Gene Symbol=UGT706E2;CGSNL Gene Name=UDP-DEPENDENT GLYCOSYLTRANSFERASE 706E2;Oryzabase Gene Symbol Synonym(s)=OsUGT706E2;Oryzabase Gene Name Synonym(s)=UDP-dependent glycosyltransferase 706E2;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK110876 (DDBJ%2C Best hit);ORF_evidence=NP_001149283.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=002-172-G03;Oryzabase=22226;Expression=AK110876;TENOR=Os05t0527900-01;KEGG=Os05t0527900-01
Chr05	irgsp1_rep	five_prime_UTR	26237109	26237122	.	-	.	Parent=Os05t0527900-01
Chr05	irgsp1_rep	CDS	26235711	26237108	.	-	0	Parent=Os05t0527900-01
Chr05	irgsp1_rep	three_prime_UTR	26235609	26235710	.	-	.	Parent=Os05t0527900-01
Chr05	irgsp1_rep	mRNA	26237497	26245891	.	-	.	ID=Os05t0528000-01;Name=Os05t0528000-01;Locus_id=Os05g0528000;CGSNL Gene Symbol=RBOHC;CGSNL Gene Name=RESPIRATORY BURST OXIDASE HOMOLOG C;Oryzabase Gene Symbol Synonym(s)=rbohC%2C OsrbohC%2C Os rbohC%2C OsRbohC%2C OsNox5%2C Nox5%2C OsrbohD%2C OsRboh5%2C RBOHA%2C OsRboh5%2C Rboh5;Oryzabase Gene Name Synonym(s)=Respiratory Burst Oxidase Homolog C%2C NADPH oxidase 5;Note=Similar to RbohAOsp (Fragment).;Transcript_evidence=AK120905 (DDBJ%2C Best hit);ORF_evidence=NP_001106018.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: iron ion binding (GO:0005506),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: oxidoreductase activity%2C acting on NADH or NADPH%2C oxygen as acceptor (GO:0050664);InterPro=CytoChrome b245%2C heavy chain (IPR000778),EF-hand-like domain (IPR011992),FAD-binding 8 (IPR013112),Ferric reductase%2C NAD binding (IPR013121),Flavoprotein transmembrane component (IPR013130),NADPH oxidase Respiratory burst (IPR013623),Ferredoxin reductase-type FAD-binding domain (IPR017927),Riboflavin synthase-like beta-barrel (IPR017938),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J023031D09;Oryzabase=10483;Expression=AK120905;TENOR=Os05t0528000-01;KEGG=Os05t0528000-01
Chr05	irgsp1_rep	five_prime_UTR	26245803	26245891	.	-	.	Parent=Os05t0528000-01
Chr05	irgsp1_rep	CDS	26245133	26245802	.	-	0	Parent=Os05t0528000-01
Chr05	irgsp1_rep	CDS	26244891	26245050	.	-	2	Parent=Os05t0528000-01
Chr05	irgsp1_rep	CDS	26244757	26244805	.	-	1	Parent=Os05t0528000-01
Chr05	irgsp1_rep	CDS	26243990	26244103	.	-	0	Parent=Os05t0528000-01
Chr05	irgsp1_rep	CDS	26241938	26242360	.	-	0	Parent=Os05t0528000-01
Chr05	irgsp1_rep	CDS	26240463	26240846	.	-	0	Parent=Os05t0528000-01
Chr05	irgsp1_rep	CDS	26240279	26240374	.	-	0	Parent=Os05t0528000-01
Chr05	irgsp1_rep	CDS	26240078	26240193	.	-	0	Parent=Os05t0528000-01
Chr05	irgsp1_rep	CDS	26239768	26239935	.	-	1	Parent=Os05t0528000-01
Chr05	irgsp1_rep	CDS	26239529	26239688	.	-	1	Parent=Os05t0528000-01
Chr05	irgsp1_rep	CDS	26239150	26239347	.	-	0	Parent=Os05t0528000-01
Chr05	irgsp1_rep	CDS	26238921	26239049	.	-	0	Parent=Os05t0528000-01
Chr05	irgsp1_rep	CDS	26238749	26238827	.	-	0	Parent=Os05t0528000-01
Chr05	irgsp1_rep	CDS	26238251	26238360	.	-	2	Parent=Os05t0528000-01
Chr05	irgsp1_rep	three_prime_UTR	26238245	26238250	.	-	.	Parent=Os05t0528000-01
Chr05	irgsp1_rep	three_prime_UTR	26237953	26238152	.	-	.	Parent=Os05t0528000-01
Chr05	irgsp1_rep	three_prime_UTR	26237497	26237834	.	-	.	Parent=Os05t0528000-01
Chr05	irgsp1_rep	mRNA	26238916	26244105	.	+	.	ID=Os05t0528050-00;Name=Os05t0528050-00;Locus_id=Os05g0528050;Note=Hypothetical protein.;Transcript_evidence=tplb0025i04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0528050-00
Chr05	irgsp1_rep	five_prime_UTR	26238916	26239025	.	+	.	Parent=Os05t0528050-00
Chr05	irgsp1_rep	five_prime_UTR	26239128	26239285	.	+	.	Parent=Os05t0528050-00
Chr05	irgsp1_rep	five_prime_UTR	26239520	26239683	.	+	.	Parent=Os05t0528050-00
Chr05	irgsp1_rep	five_prime_UTR	26239755	26239917	.	+	.	Parent=Os05t0528050-00
Chr05	irgsp1_rep	five_prime_UTR	26240061	26240247	.	+	.	Parent=Os05t0528050-00
Chr05	irgsp1_rep	five_prime_UTR	26240438	26240795	.	+	.	Parent=Os05t0528050-00
Chr05	irgsp1_rep	CDS	26240796	26240844	.	+	0	Parent=Os05t0528050-00
Chr05	irgsp1_rep	CDS	26241930	26242219	.	+	2	Parent=Os05t0528050-00
Chr05	irgsp1_rep	three_prime_UTR	26242220	26242343	.	+	.	Parent=Os05t0528050-00
Chr05	irgsp1_rep	three_prime_UTR	26243974	26244105	.	+	.	Parent=Os05t0528050-00
Chr05	irgsp1_rep	mRNA	26244871	26245782	.	+	.	ID=Os05t0528101-00;Name=Os05t0528101-00;Locus_id=Os05g0528101;Note=Hypothetical gene.;Transcript_evidence=EU950506 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0528101-00;KEGG=Os05t0528101-00
Chr05	irgsp1_rep	five_prime_UTR	26244871	26245239	.	+	.	Parent=Os05t0528101-00
Chr05	irgsp1_rep	CDS	26245240	26245782	.	+	0	Parent=Os05t0528101-00
Chr05	irgsp1_rep	mRNA	26249579	26251352	.	-	.	ID=Os05t0528200-01;Name=Os05t0528200-01;Locus_id=Os05g0528200;Note=Similar to 50S ribosomal protein L20.;Transcript_evidence=AK062985 (DDBJ%2C Best hit);ORF_evidence=C5XJ42 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735),Molecular Function: rRNA binding (GO:0019843);InterPro=Ribosomal protein L20 (IPR005813);NIAS_FLcDNA=001-109-F08;Expression=AK062985;TENOR=Os05t0528200-01;KEGG=Os05t0528200-01
Chr05	irgsp1_rep	five_prime_UTR	26251262	26251352	.	-	.	Parent=Os05t0528200-01
Chr05	irgsp1_rep	five_prime_UTR	26250379	26250420	.	-	.	Parent=Os05t0528200-01
Chr05	irgsp1_rep	CDS	26250193	26250378	.	-	0	Parent=Os05t0528200-01
Chr05	irgsp1_rep	CDS	26249822	26250001	.	-	0	Parent=Os05t0528200-01
Chr05	irgsp1_rep	three_prime_UTR	26249579	26249821	.	-	.	Parent=Os05t0528200-01
Chr05	irgsp1_rep	mRNA	26257051	26257809	.	-	.	ID=Os05t0528500-00;Name=Os05t0528500-00;Locus_id=Os05g0528500;CGSNL Gene Symbol=WRKY58;CGSNL Gene Name=WRKY GENE 58;Oryzabase Gene Symbol Synonym(s)=OsWRKY58;Oryzabase Gene Name Synonym(s)=Rice WRKY gene58;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6IEM3 (UniProt);Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6572;TENOR=Os05t0528500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	26257463	26257809	.	-	0	Parent=Os05t0528500-00
Chr05	irgsp1_rep	CDS	26257051	26257150	.	-	1	Parent=Os05t0528500-00
Chr05	irgsp1_rep	mRNA	26260749	26263632	.	-	.	ID=Os05t0528600-01;Name=Os05t0528600-01;Locus_id=Os05g0528600;RAP-DB Gene Symbol Synonym(s)=YUCCA2%2C OsYUCCA2%2C OsYUC2;RAP-DB Gene Name Synonym(s)=YUCCA-LIKE GENE 2%2C (YUCCA-like gene);CGSNL Gene Symbol=YUCCA2;CGSNL Gene Name=YUCCA-LIKE GENE 2;Oryzabase Gene Symbol Synonym(s)=OsYUCCA2%2C OsYUC2%2C YUC2;Oryzabase Gene Name Synonym(s)=(YUCCA-like gene);Note=Flavin monooxygenase-like enzyme%2C Auxin biosynthesis;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: flavin-containing monooxygenase activity (GO:0004499),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=Pyridine nucleotide-disulphide oxidoreductase%2C class-II (IPR000103),FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR013027),NAD(P)-binding domain (IPR016040),Flavin monooxygenase-like (IPR020946);Manual Curation=June 28%2C 2010;Literature_PMID=17220367;Oryzabase=7439;TENOR=Os05t0528600-01
Chr05	irgsp1_rep	five_prime_UTR	26263418	26263632	.	-	.	Parent=Os05t0528600-01
Chr05	irgsp1_rep	CDS	26262779	26263417	.	-	0	Parent=Os05t0528600-01
Chr05	irgsp1_rep	CDS	26261558	26261806	.	-	0	Parent=Os05t0528600-01
Chr05	irgsp1_rep	CDS	26261338	26261460	.	-	0	Parent=Os05t0528600-01
Chr05	irgsp1_rep	CDS	26260786	26260992	.	-	0	Parent=Os05t0528600-01
Chr05	irgsp1_rep	three_prime_UTR	26260749	26260785	.	-	.	Parent=Os05t0528600-01
Chr05	irgsp1_rep	mRNA	26274953	26276361	.	+	.	ID=Os05t0528701-01;Name=Os05t0528701-01;Locus_id=Os05g0528701;Note=Non-protein coding transcript.;Transcript_evidence=AK242080 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J075137N18;TENOR=Os05t0528701-01
Chr05	irgsp1_rep	exon	26274953	26276361	.	+	.	Parent=Os05t0528701-01
Chr05	irgsp1_rep	mRNA	26276599	26279364	.	+	.	ID=Os05t0528900-01;Name=Os05t0528900-01;Locus_id=Os05g0528900;Note=Ribosomal protein L9 family protein.;Transcript_evidence=AK072642 (DDBJ%2C Best hit),AK099090 (DDBJ%2C Best hit);ORF_evidence=B6T3L4 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L9 (IPR000244),Ribosomal protein L9/RNase H1%2C N-terminal (IPR009027),Ribosomal protein L9%2C C-terminal (IPR020069),Ribosomal protein L9%2C N-terminal (IPR020070);NIAS_FLcDNA=J023133O15,J023015G24;TENOR=Os05t0528900-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	26276599	26276620	.	+	.	Parent=Os05t0528900-01
Chr05	irgsp1_rep	CDS	26276621	26276743	.	+	0	Parent=Os05t0528900-01
Chr05	irgsp1_rep	CDS	26277171	26277305	.	+	0	Parent=Os05t0528900-01
Chr05	irgsp1_rep	CDS	26277708	26277770	.	+	0	Parent=Os05t0528900-01
Chr05	irgsp1_rep	CDS	26278521	26278583	.	+	0	Parent=Os05t0528900-01
Chr05	irgsp1_rep	CDS	26278738	26278809	.	+	0	Parent=Os05t0528900-01
Chr05	irgsp1_rep	CDS	26278884	26279048	.	+	0	Parent=Os05t0528900-01
Chr05	irgsp1_rep	three_prime_UTR	26279049	26279364	.	+	.	Parent=Os05t0528900-01
Chr05	irgsp1_rep	mRNA	26279581	26279791	.	+	.	ID=Os05t0528950-00;Name=Os05t0528950-00;Locus_id=Os05g0528950;Note=Non-protein coding transcript.;Transcript_evidence=AJ234442 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0528950-00
Chr05	irgsp1_rep	exon	26279581	26279791	.	+	.	Parent=Os05t0528950-00
Chr05	irgsp1_rep	mRNA	26279602	26282852	.	-	.	ID=Os05t0529000-01;Name=Os05t0529000-01;Locus_id=Os05g0529000;RAP-DB Gene Symbol Synonym(s)=OsCOLE1;RAP-DB Gene Name Synonym(s)=OsCONTINUOUS VASCULAR RING-LIKE 1%2C OsCOV-LIKE 1;Oryzabase Gene Symbol Synonym(s)=OsCOLE1%2C COLE1;Oryzabase Gene Name Synonym(s)=OsCONTINUOUS VASCULAR RING-LIKE 1%2C CONTINUOUS VASCULAR RING-LIKE 1%2C OsCOV-LIKE 1%2C COV-LIKE 1;Note=Tonoplast-localized DUF502-containing protein%2C COV-like protein%2C Regulation of intracellular auxin transport;Transcript_evidence=AK059220,KT935168;ORF_evidence=Q65XC4;InterPro=Protein of unknown function DUF502 (IPR007462);NIAS_FLcDNA=001-024-D01;Manual Curation=June 10%2C 2016;Literature_PMID=27265035;Oryzabase=21348;Expression=AK059220;TENOR=Os05t0529000-01;KEGG=Os05t0529000-01
Chr05	irgsp1_rep	five_prime_UTR	26282732	26282852	.	-	.	Parent=Os05t0529000-01
Chr05	irgsp1_rep	CDS	26282564	26282731	.	-	0	Parent=Os05t0529000-01
Chr05	irgsp1_rep	CDS	26281820	26281872	.	-	0	Parent=Os05t0529000-01
Chr05	irgsp1_rep	CDS	26281052	26281161	.	-	1	Parent=Os05t0529000-01
Chr05	irgsp1_rep	CDS	26280524	26280691	.	-	2	Parent=Os05t0529000-01
Chr05	irgsp1_rep	CDS	26280335	26280432	.	-	2	Parent=Os05t0529000-01
Chr05	irgsp1_rep	CDS	26280039	26280165	.	-	0	Parent=Os05t0529000-01
Chr05	irgsp1_rep	CDS	26279829	26279926	.	-	2	Parent=Os05t0529000-01
Chr05	irgsp1_rep	three_prime_UTR	26279602	26279828	.	-	.	Parent=Os05t0529000-01
Chr05	irgsp1_rep	mRNA	26285817	26288430	.	-	.	ID=Os05t0529200-01;Name=Os05t0529200-01;Locus_id=Os05g0529200;Note=Crotonase%2C core domain containing protein.;Transcript_evidence=AK065770 (DDBJ%2C Best hit);ORF_evidence=NP_001150397.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Crotonase%2C core (IPR001753);NIAS_FLcDNA=J013042H06;TENOR=Os05t0529200-01
Chr05	irgsp1_rep	five_prime_UTR	26288268	26288430	.	-	.	Parent=Os05t0529200-01
Chr05	irgsp1_rep	CDS	26287539	26288267	.	-	0	Parent=Os05t0529200-01
Chr05	irgsp1_rep	three_prime_UTR	26287528	26287538	.	-	.	Parent=Os05t0529200-01
Chr05	irgsp1_rep	three_prime_UTR	26285817	26285993	.	-	.	Parent=Os05t0529200-01
Chr05	irgsp1_rep	mRNA	26285820	26288328	.	-	.	ID=Os05t0529200-02;Name=Os05t0529200-02;Locus_id=Os05g0529200;Note=Crotonase%2C core domain containing protein.;Transcript_evidence=AK101348 (DDBJ%2C Best hit);ORF_evidence=NP_001150397.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Crotonase%2C core (IPR001753);NIAS_FLcDNA=J033034L17;TENOR=Os05t0529200-02
Chr05	irgsp1_rep	five_prime_UTR	26288268	26288328	.	-	.	Parent=Os05t0529200-02
Chr05	irgsp1_rep	CDS	26287539	26288267	.	-	0	Parent=Os05t0529200-02
Chr05	irgsp1_rep	three_prime_UTR	26287528	26287538	.	-	.	Parent=Os05t0529200-02
Chr05	irgsp1_rep	three_prime_UTR	26285820	26285993	.	-	.	Parent=Os05t0529200-02
Chr05	irgsp1_rep	mRNA	26289038	26291979	.	-	.	ID=Os05t0529300-01;Name=Os05t0529300-01;Locus_id=Os05g0529300;Note=Similar to ER lumen protein retaining receptor (HDEL receptor).;Transcript_evidence=AK102648 (DDBJ%2C Best hit);ORF_evidence=B8B071 (UniProt);GO=Biological Process: protein retention in ER lumen (GO:0006621),Cellular Component: integral to membrane (GO:0016021),Molecular Function: ER retention sequence binding (GO:0046923);InterPro=ER lumen protein retaining receptor (IPR000133);NIAS_FLcDNA=J033100L05;Expression=AK102648;TENOR=Os05t0529300-01;KEGG=Os05t0529300-01
Chr05	irgsp1_rep	five_prime_UTR	26291882	26291979	.	-	.	Parent=Os05t0529300-01
Chr05	irgsp1_rep	CDS	26291791	26291881	.	-	0	Parent=Os05t0529300-01
Chr05	irgsp1_rep	CDS	26291433	26291698	.	-	2	Parent=Os05t0529300-01
Chr05	irgsp1_rep	CDS	26290433	26290548	.	-	0	Parent=Os05t0529300-01
Chr05	irgsp1_rep	CDS	26289688	26289761	.	-	1	Parent=Os05t0529300-01
Chr05	irgsp1_rep	CDS	26289540	26289603	.	-	2	Parent=Os05t0529300-01
Chr05	irgsp1_rep	CDS	26289429	26289465	.	-	1	Parent=Os05t0529300-01
Chr05	irgsp1_rep	three_prime_UTR	26289038	26289428	.	-	.	Parent=Os05t0529300-01
Chr05	irgsp1_rep	mRNA	26292353	26294611	.	+	.	ID=Os05t0529400-01;Name=Os05t0529400-01;Locus_id=Os05g0529400;Note=Similar to ubiquitin domain containing 1.;Transcript_evidence=AK063846 (DDBJ%2C Best hit);ORF_evidence=NP_001151929.1 (RefSeq);NIAS_FLcDNA=001-122-C06;Expression=AK063846;TENOR=Os05t0529400-01;KEGG=Os05t0529400-01
Chr05	irgsp1_rep	five_prime_UTR	26292353	26292554	.	+	.	Parent=Os05t0529400-01
Chr05	irgsp1_rep	CDS	26292555	26292588	.	+	0	Parent=Os05t0529400-01
Chr05	irgsp1_rep	CDS	26293697	26293819	.	+	2	Parent=Os05t0529400-01
Chr05	irgsp1_rep	CDS	26294195	26294314	.	+	2	Parent=Os05t0529400-01
Chr05	irgsp1_rep	CDS	26294421	26294485	.	+	2	Parent=Os05t0529400-01
Chr05	irgsp1_rep	three_prime_UTR	26294486	26294611	.	+	.	Parent=Os05t0529400-01
Chr05	irgsp1_rep	mRNA	26292449	26293949	.	+	.	ID=Os05t0529400-02;Name=Os05t0529400-02;Locus_id=Os05g0529400;Note=Similar to ubiquitin domain containing 1.;Transcript_evidence=AK122038 (DDBJ%2C Best hit);ORF_evidence=NP_001151929.1 (RefSeq);NIAS_FLcDNA=J033113C01;Expression=AK122038;TENOR=Os05t0529400-02;KEGG=Os05t0529400-02
Chr05	irgsp1_rep	five_prime_UTR	26292449	26293677	.	+	.	Parent=Os05t0529400-02
Chr05	irgsp1_rep	CDS	26293678	26293827	.	+	0	Parent=Os05t0529400-02
Chr05	irgsp1_rep	three_prime_UTR	26293828	26293949	.	+	.	Parent=Os05t0529400-02
Chr05	irgsp1_rep	mRNA	26300251	26305695	.	+	.	ID=Os05t0529600-01;Name=Os05t0529600-01;Locus_id=Os05g0529600;Note=Hypothetical conserved gene.;Transcript_evidence=AK287650 (DDBJ%2C Best hit);ORF_evidence=B8B072 (UniProt);GO=Biological Process: DNA replication (GO:0006260),Cellular Component: DNA polymerase III complex (GO:0009360),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed DNA polymerase activity (GO:0003887),Molecular Function: ATP binding (GO:0005524);InterPro=DNA polymerase III%2C clamp loader complex%2C gamma/delta/delta subunit%2C C-terminal (IPR008921),DNA polymerase III%2C subunit gamma/ tau (IPR012763),DNA polymerase III%2C gamma subunit%2C domain III (IPR022754);NIAS_FLcDNA=J065092E02;TENOR=Os05t0529600-01;KEGG=Os05t0529600-01
Chr05	irgsp1_rep	five_prime_UTR	26300251	26300406	.	+	.	Parent=Os05t0529600-01
Chr05	irgsp1_rep	CDS	26300407	26302170	.	+	0	Parent=Os05t0529600-01
Chr05	irgsp1_rep	CDS	26302609	26302828	.	+	0	Parent=Os05t0529600-01
Chr05	irgsp1_rep	CDS	26303134	26303640	.	+	2	Parent=Os05t0529600-01
Chr05	irgsp1_rep	CDS	26304267	26304873	.	+	2	Parent=Os05t0529600-01
Chr05	irgsp1_rep	CDS	26305155	26305215	.	+	1	Parent=Os05t0529600-01
Chr05	irgsp1_rep	CDS	26305436	26305528	.	+	0	Parent=Os05t0529600-01
Chr05	irgsp1_rep	three_prime_UTR	26305529	26305695	.	+	.	Parent=Os05t0529600-01
Chr05	irgsp1_rep	mRNA	26311390	26314173	.	-	.	ID=Os05t0529700-01;Name=Os05t0529700-01;Locus_id=Os05g0529700;Oryzabase Gene Symbol Synonym(s)=OsDjC50;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C50%2C rice DJC82 homolog;Note=Similar to electron transporter/ heat shock protein binding protein.;Transcript_evidence=AK062298 (DDBJ%2C Best hit);ORF_evidence=B6SQG7 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=3Fe-4S ferredoxin (IPR001080),4Fe-4S binding domain (IPR001450),Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),4Fe-4S ferredoxin%2C iron-sulpur binding domain (IPR017896),4Fe-4S ferredoxin%2C iron-sulphur binding%2C conserved site (IPR017900);NIAS_FLcDNA=001-100-G03;Oryzabase=12207;Expression=AK062298;TENOR=Os05t0529700-01;KEGG=Os05t0529700-01
Chr05	irgsp1_rep	five_prime_UTR	26314104	26314173	.	-	.	Parent=Os05t0529700-01
Chr05	irgsp1_rep	CDS	26313846	26314103	.	-	0	Parent=Os05t0529700-01
Chr05	irgsp1_rep	CDS	26313419	26313547	.	-	0	Parent=Os05t0529700-01
Chr05	irgsp1_rep	CDS	26313169	26313298	.	-	0	Parent=Os05t0529700-01
Chr05	irgsp1_rep	CDS	26312951	26313071	.	-	2	Parent=Os05t0529700-01
Chr05	irgsp1_rep	CDS	26312767	26312848	.	-	1	Parent=Os05t0529700-01
Chr05	irgsp1_rep	CDS	26312409	26312467	.	-	0	Parent=Os05t0529700-01
Chr05	irgsp1_rep	CDS	26312166	26312204	.	-	1	Parent=Os05t0529700-01
Chr05	irgsp1_rep	CDS	26311994	26312015	.	-	1	Parent=Os05t0529700-01
Chr05	irgsp1_rep	three_prime_UTR	26311919	26311993	.	-	.	Parent=Os05t0529700-01
Chr05	irgsp1_rep	three_prime_UTR	26311390	26311761	.	-	.	Parent=Os05t0529700-01
Chr05	irgsp1_rep	mRNA	26311384	26314172	.	-	.	ID=Os05t0529700-02;Name=Os05t0529700-02;Locus_id=Os05g0529700;Oryzabase Gene Symbol Synonym(s)=OsDjC50;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C50%2C rice DJC82 homolog;Note=Similar to electron transporter/ heat shock protein binding protein.;Transcript_evidence=AK064168 (DDBJ%2C Best hit);ORF_evidence=B6SQG7 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=3Fe-4S ferredoxin (IPR001080),4Fe-4S binding domain (IPR001450),Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),4Fe-4S ferredoxin%2C iron-sulpur binding domain (IPR017896),4Fe-4S ferredoxin%2C iron-sulphur binding%2C conserved site (IPR017900);NIAS_FLcDNA=002-104-A01;Oryzabase=12207;Expression=AK064168;TENOR=Os05t0529700-02;KEGG=Os05t0529700-02
Chr05	irgsp1_rep	five_prime_UTR	26314104	26314172	.	-	.	Parent=Os05t0529700-02
Chr05	irgsp1_rep	CDS	26313846	26314103	.	-	0	Parent=Os05t0529700-02
Chr05	irgsp1_rep	CDS	26313419	26313547	.	-	0	Parent=Os05t0529700-02
Chr05	irgsp1_rep	CDS	26313169	26313298	.	-	0	Parent=Os05t0529700-02
Chr05	irgsp1_rep	CDS	26312951	26313071	.	-	2	Parent=Os05t0529700-02
Chr05	irgsp1_rep	CDS	26312767	26312848	.	-	1	Parent=Os05t0529700-02
Chr05	irgsp1_rep	CDS	26312417	26312467	.	-	0	Parent=Os05t0529700-02
Chr05	irgsp1_rep	CDS	26312166	26312204	.	-	0	Parent=Os05t0529700-02
Chr05	irgsp1_rep	CDS	26311919	26312015	.	-	0	Parent=Os05t0529700-02
Chr05	irgsp1_rep	CDS	26311634	26311779	.	-	2	Parent=Os05t0529700-02
Chr05	irgsp1_rep	three_prime_UTR	26311384	26311633	.	-	.	Parent=Os05t0529700-02
Chr05	irgsp1_rep	mRNA	26310862	26314166	.	-	.	ID=Os05t0529700-03;Name=Os05t0529700-03;Locus_id=Os05g0529700;Oryzabase Gene Symbol Synonym(s)=OsDjC50;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C50%2C rice DJC82 homolog;Note=Heat shock protein DnaJ family protein.;Transcript_evidence=AK108715 (DDBJ%2C Best hit);ORF_evidence=B6SQG7 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=3Fe-4S ferredoxin (IPR001080),4Fe-4S binding domain (IPR001450),Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),4Fe-4S ferredoxin%2C iron-sulpur binding domain (IPR017896),4Fe-4S ferredoxin%2C iron-sulphur binding%2C conserved site (IPR017900);NIAS_FLcDNA=002-150-B07;Oryzabase=12207;Expression=AK108715;TENOR=Os05t0529700-03;KEGG=Os05t0529700-03
Chr05	irgsp1_rep	five_prime_UTR	26314104	26314166	.	-	.	Parent=Os05t0529700-03
Chr05	irgsp1_rep	CDS	26313846	26314103	.	-	0	Parent=Os05t0529700-03
Chr05	irgsp1_rep	CDS	26313419	26313547	.	-	0	Parent=Os05t0529700-03
Chr05	irgsp1_rep	CDS	26313169	26313298	.	-	0	Parent=Os05t0529700-03
Chr05	irgsp1_rep	CDS	26312951	26313071	.	-	2	Parent=Os05t0529700-03
Chr05	irgsp1_rep	CDS	26312767	26312848	.	-	1	Parent=Os05t0529700-03
Chr05	irgsp1_rep	CDS	26312417	26312467	.	-	0	Parent=Os05t0529700-03
Chr05	irgsp1_rep	CDS	26312166	26312204	.	-	0	Parent=Os05t0529700-03
Chr05	irgsp1_rep	CDS	26311919	26312015	.	-	0	Parent=Os05t0529700-03
Chr05	irgsp1_rep	CDS	26311638	26311761	.	-	2	Parent=Os05t0529700-03
Chr05	irgsp1_rep	CDS	26311353	26311356	.	-	1	Parent=Os05t0529700-03
Chr05	irgsp1_rep	three_prime_UTR	26310862	26311352	.	-	.	Parent=Os05t0529700-03
Chr05	irgsp1_rep	mRNA	26322736	26325818	.	-	.	ID=Os05t0529900-00;Name=Os05t0529900-00;Locus_id=Os05g0529900;Note=Similar to Cell division control protein 50.;Transcript_evidence=EU960062 (DDBJ);ORF_evidence=B4FDP2 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Protein of unknown function DUF284%2C transmembrane eukaryotic (IPR005045);TENOR=Os05t0529900-00;KEGG=Os05t0529900-00
Chr05	irgsp1_rep	CDS	26325690	26325818	.	-	0	Parent=Os05t0529900-00
Chr05	irgsp1_rep	CDS	26325489	26325563	.	-	0	Parent=Os05t0529900-00
Chr05	irgsp1_rep	CDS	26324856	26324963	.	-	0	Parent=Os05t0529900-00
Chr05	irgsp1_rep	CDS	26324122	26324192	.	-	0	Parent=Os05t0529900-00
Chr05	irgsp1_rep	CDS	26323723	26324023	.	-	1	Parent=Os05t0529900-00
Chr05	irgsp1_rep	CDS	26322898	26323187	.	-	0	Parent=Os05t0529900-00
Chr05	irgsp1_rep	CDS	26322736	26322796	.	-	1	Parent=Os05t0529900-00
Chr05	irgsp1_rep	mRNA	26334144	26337301	.	-	.	ID=Os05t0530300-01;Name=Os05t0530300-01;Locus_id=Os05g0530300;Note=Conserved hypothetical protein.;Transcript_evidence=AK241671 (DDBJ%2C Best hit);ORF_evidence=B8B074 (UniProt);NIAS_FLcDNA=J065192E07;TENOR=Os05t0530300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	26337184	26337301	.	-	.	Parent=Os05t0530300-01
Chr05	irgsp1_rep	CDS	26336524	26337183	.	-	0	Parent=Os05t0530300-01
Chr05	irgsp1_rep	CDS	26335801	26336040	.	-	0	Parent=Os05t0530300-01
Chr05	irgsp1_rep	CDS	26335527	26335616	.	-	0	Parent=Os05t0530300-01
Chr05	irgsp1_rep	CDS	26334976	26335125	.	-	0	Parent=Os05t0530300-01
Chr05	irgsp1_rep	CDS	26334744	26334868	.	-	0	Parent=Os05t0530300-01
Chr05	irgsp1_rep	CDS	26334480	26334609	.	-	1	Parent=Os05t0530300-01
Chr05	irgsp1_rep	CDS	26334256	26334381	.	-	0	Parent=Os05t0530300-01
Chr05	irgsp1_rep	three_prime_UTR	26334144	26334255	.	-	.	Parent=Os05t0530300-01
Chr05	irgsp1_rep	mRNA	26334219	26337336	.	+	.	ID=Os05t0530350-00;Name=Os05t0530350-00;Locus_id=Os05g0530350;Note=Hypothetical protein.;Transcript_evidence=tplb0041d23 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0530350-00
Chr05	irgsp1_rep	five_prime_UTR	26334219	26334378	.	+	.	Parent=Os05t0530350-00
Chr05	irgsp1_rep	five_prime_UTR	26334477	26334597	.	+	.	Parent=Os05t0530350-00
Chr05	irgsp1_rep	five_prime_UTR	26334727	26334861	.	+	.	Parent=Os05t0530350-00
Chr05	irgsp1_rep	five_prime_UTR	26334968	26335142	.	+	.	Parent=Os05t0530350-00
Chr05	irgsp1_rep	five_prime_UTR	26335545	26335613	.	+	.	Parent=Os05t0530350-00
Chr05	irgsp1_rep	five_prime_UTR	26335798	26336015	.	+	.	Parent=Os05t0530350-00
Chr05	irgsp1_rep	CDS	26336016	26336049	.	+	0	Parent=Os05t0530350-00
Chr05	irgsp1_rep	CDS	26336529	26336676	.	+	2	Parent=Os05t0530350-00
Chr05	irgsp1_rep	CDS	26336731	26337336	.	+	1	Parent=Os05t0530350-00
Chr05	irgsp1_rep	mRNA	26344418	26346857	.	+	.	ID=Os05t0530400-01;Name=Os05t0530400-01;Locus_id=Os05g0530400;RAP-DB Gene Symbol Synonym(s)=OsSPL7%2C SPL7%2C HSFA-4d;RAP-DB Gene Name Synonym(s)=Spotted-leaf7%2C Heat stress transcription factor A-4d;CGSNL Gene Symbol=SPL7;CGSNL Gene Name=SPOTTED LEAF 7;Oryzabase Gene Symbol Synonym(s)=spl7%2C HSFA4D%2C HSF10%2C HSF15%2C OsHSF15%2C SP17%2C OsHsf-15%2C rHsf10%2C OsHsfA4d%2C HSfA4d%2C lrd13%2C HSF1;Oryzabase Gene Name Synonym(s)=spotted leaf7%2C spotted leaf-7%2C Heat stress transcription factor Spl7%2C Heat stress transcription factor A-4d%2C Heat stress transcription factor 15%2C Heat stress transcription factor 10%2C Protein SPOTTED LEAF 7%2C HEAT STRESS TRANSCRIPTION FACTOR A4d%2C spontaneous lesion 7;Note=Heat stress transcription factor%2C Plant growth and balancing reactive oxygen species (ROS) during biotic and abiotic stress;Transcript_evidence=AK100412;ORF_evidence=Q93VB5;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA-binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Cellular Component: nucleus (GO:0005634);InterPro=Winged helix-like DNA-binding domain superfamily (IPR036388),Winged helix DNA-binding domain superfamily (IPR036390),Heat shock factor (HSF)-type%2C DNA-binding (IPR000232);NIAS_FLcDNA=J023087K12;Manual Curation=October 21%2C 2019;Literature_PMID=31623772,12032317;Oryzabase=683;Expression=AK100412;TENOR=Os05t0530400-01;KEGG=Os05t0530400-01;Subcellular location=nucleus (GO:0005634)
Chr05	irgsp1_rep	five_prime_UTR	26344418	26344551	.	+	.	Parent=Os05t0530400-01
Chr05	irgsp1_rep	five_prime_UTR	26344795	26345026	.	+	.	Parent=Os05t0530400-01
Chr05	irgsp1_rep	CDS	26345027	26345263	.	+	0	Parent=Os05t0530400-01
Chr05	irgsp1_rep	CDS	26345501	26346643	.	+	0	Parent=Os05t0530400-01
Chr05	irgsp1_rep	three_prime_UTR	26346644	26346857	.	+	.	Parent=Os05t0530400-01
Chr05	irgsp1_rep	mRNA	26348538	26351609	.	-	.	ID=Os05t0530500-01;Name=Os05t0530500-01;Locus_id=Os05g0530500;CGSNL Gene Symbol=OSK1;CGSNL Gene Name=PROTEIN KINASE 1;Oryzabase Gene Symbol Synonym(s)=osk1%2C SnRK1A%2C OsSnRK1A%2C OsSNRK1a%2C SnRK1A/OSK1%2C SnRK1a;Oryzabase Gene Name Synonym(s)=protein kinase 1%2C SnRK1A protein kinase%2C sucrose non-fermenting-1 related protein kinase 1a;Note=Similar to OSK1.;Transcript_evidence=AK069613 (DDBJ%2C Best hit);ORF_evidence=Q9ZRJ1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (IPR015940),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023019A07;Oryzabase=6182;TENOR=Os05t0530500-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	26351419	26351609	.	-	.	Parent=Os05t0530500-01
Chr05	irgsp1_rep	five_prime_UTR	26350879	26350881	.	-	.	Parent=Os05t0530500-01
Chr05	irgsp1_rep	CDS	26350704	26350878	.	-	0	Parent=Os05t0530500-01
Chr05	irgsp1_rep	CDS	26349756	26349940	.	-	2	Parent=Os05t0530500-01
Chr05	irgsp1_rep	CDS	26349348	26349530	.	-	0	Parent=Os05t0530500-01
Chr05	irgsp1_rep	CDS	26349116	26349247	.	-	0	Parent=Os05t0530500-01
Chr05	irgsp1_rep	CDS	26348837	26349022	.	-	0	Parent=Os05t0530500-01
Chr05	irgsp1_rep	CDS	26348655	26348744	.	-	0	Parent=Os05t0530500-01
Chr05	irgsp1_rep	CDS	26348538	26348579	.	-	0	Parent=Os05t0530500-01
Chr05	irgsp1_rep	mRNA	26347148	26351599	.	-	.	ID=Os05t0530500-02;Name=Os05t0530500-02;Locus_id=Os05g0530500;RAP-DB Gene Symbol Synonym(s)=SNRK1A%2C SnRK1A/OSK1%2C SnRK1A%2C snrk1a%2C osk1;RAP-DB Gene Name Synonym(s)=SNRK1A PROTEIN KINASE%2C Rice Snf1-related protein kinase1%2C SnRK1A protein kinase%2C protein kinase 1;CGSNL Gene Symbol=OSK1;CGSNL Gene Name=PROTEIN KINASE 1;Oryzabase Gene Symbol Synonym(s)=osk1%2C SnRK1A%2C OsSnRK1A%2C OsSNRK1a%2C SnRK1A/OSK1%2C SnRK1a;Oryzabase Gene Name Synonym(s)=protein kinase 1%2C SnRK1A protein kinase%2C sucrose non-fermenting-1 related protein kinase 1a;Note=Serine/threonine protein kinase%2C Sugar signaling;Transcript_evidence=D82039 (Genbank),AB101655 (Genbank),AF062479 (Genbank),AK067158 (Genbank);ORF_evidence=Q9ZRJ1 (UniProt),Q0DGI1 (UniProt),Q9ZTF6 (UniProt),Q852Q2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Kinase-associated KA1 (IPR001772),Serine/threonine- / dual-specificity protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (IPR015940),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013094M16;Manual Curation=August 7%2C 2009;Literature_PMID=9870704,16087344,17766403;Oryzabase=6182;TENOR=Os05t0530500-02;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	26351419	26351599	.	-	.	Parent=Os05t0530500-02
Chr05	irgsp1_rep	five_prime_UTR	26350879	26350885	.	-	.	Parent=Os05t0530500-02
Chr05	irgsp1_rep	CDS	26350704	26350878	.	-	0	Parent=Os05t0530500-02
Chr05	irgsp1_rep	CDS	26349756	26349940	.	-	2	Parent=Os05t0530500-02
Chr05	irgsp1_rep	CDS	26349348	26349530	.	-	0	Parent=Os05t0530500-02
Chr05	irgsp1_rep	CDS	26349116	26349247	.	-	0	Parent=Os05t0530500-02
Chr05	irgsp1_rep	CDS	26348837	26349022	.	-	0	Parent=Os05t0530500-02
Chr05	irgsp1_rep	CDS	26348655	26348744	.	-	0	Parent=Os05t0530500-02
Chr05	irgsp1_rep	CDS	26348496	26348579	.	-	0	Parent=Os05t0530500-02
Chr05	irgsp1_rep	CDS	26348229	26348369	.	-	0	Parent=Os05t0530500-02
Chr05	irgsp1_rep	CDS	26347914	26348141	.	-	0	Parent=Os05t0530500-02
Chr05	irgsp1_rep	CDS	26347514	26347627	.	-	0	Parent=Os05t0530500-02
Chr05	irgsp1_rep	three_prime_UTR	26347148	26347513	.	-	.	Parent=Os05t0530500-02
Chr05	irgsp1_rep	mRNA	26347162	26349024	.	-	.	ID=Os05t0530500-03;Name=Os05t0530500-03;Locus_id=Os05g0530500;CGSNL Gene Symbol=OSK1;CGSNL Gene Name=PROTEIN KINASE 1;Oryzabase Gene Symbol Synonym(s)=osk1%2C SnRK1A%2C OsSnRK1A%2C OsSNRK1a%2C SnRK1A/OSK1%2C SnRK1a;Oryzabase Gene Name Synonym(s)=protein kinase 1%2C SnRK1A protein kinase%2C sucrose non-fermenting-1 related protein kinase 1a;Note=Similar to OSK1.;Transcript_evidence=AK104868 (DDBJ%2C Best hit);ORF_evidence=Q9ZRJ1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Kinase-associated KA1 (IPR001772),Protein kinase-like domain (IPR011009),Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (IPR015940);NIAS_FLcDNA=001-044-A03;Oryzabase=6182;Expression=AK104868;TENOR=Os05t0530500-03;KEGG=Os05t0530500-03 (EC:2.7.11.11)
Chr05	irgsp1_rep	five_prime_UTR	26349023	26349024	.	-	.	Parent=Os05t0530500-03
Chr05	irgsp1_rep	CDS	26348837	26349022	.	-	0	Parent=Os05t0530500-03
Chr05	irgsp1_rep	CDS	26348655	26348744	.	-	0	Parent=Os05t0530500-03
Chr05	irgsp1_rep	CDS	26348496	26348579	.	-	0	Parent=Os05t0530500-03
Chr05	irgsp1_rep	CDS	26348229	26348369	.	-	0	Parent=Os05t0530500-03
Chr05	irgsp1_rep	CDS	26347914	26348141	.	-	0	Parent=Os05t0530500-03
Chr05	irgsp1_rep	CDS	26347514	26347627	.	-	0	Parent=Os05t0530500-03
Chr05	irgsp1_rep	three_prime_UTR	26347162	26347513	.	-	.	Parent=Os05t0530500-03
Chr05	irgsp1_rep	mRNA	26347379	26351467	.	+	.	ID=Os05t0530600-00;Name=Os05t0530600-00;Locus_id=Os05g0530600;Note=Non-protein coding transcript.;Transcript_evidence=BT018428 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0530600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	exon	26347379	26347621	.	+	.	Parent=Os05t0530600-00
Chr05	irgsp1_rep	exon	26347901	26348143	.	+	.	Parent=Os05t0530600-00
Chr05	irgsp1_rep	exon	26348235	26348346	.	+	.	Parent=Os05t0530600-00
Chr05	irgsp1_rep	exon	26348474	26348574	.	+	.	Parent=Os05t0530600-00
Chr05	irgsp1_rep	exon	26348648	26348738	.	+	.	Parent=Os05t0530600-00
Chr05	irgsp1_rep	exon	26348829	26349008	.	+	.	Parent=Os05t0530600-00
Chr05	irgsp1_rep	exon	26349094	26349250	.	+	.	Parent=Os05t0530600-00
Chr05	irgsp1_rep	exon	26349353	26349530	.	+	.	Parent=Os05t0530600-00
Chr05	irgsp1_rep	exon	26349756	26349940	.	+	.	Parent=Os05t0530600-00
Chr05	irgsp1_rep	exon	26350704	26350889	.	+	.	Parent=Os05t0530600-00
Chr05	irgsp1_rep	exon	26351402	26351467	.	+	.	Parent=Os05t0530600-00
Chr05	irgsp1_rep	mRNA	26356728	26358548	.	-	.	ID=Os05t0530701-01;Name=Os05t0530701-01;Locus_id=Os05g0530701;Note=Leucine-rich repeat%2C plant specific containing protein.;Transcript_evidence=AK242295 (DDBJ%2C Best hit);ORF_evidence=B6U7B7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=J075191M10;TENOR=Os05t0530701-01;KEGG=Os05t0530701-01
Chr05	irgsp1_rep	five_prime_UTR	26358491	26358548	.	-	.	Parent=Os05t0530701-01
Chr05	irgsp1_rep	CDS	26357075	26358490	.	-	0	Parent=Os05t0530701-01
Chr05	irgsp1_rep	three_prime_UTR	26356728	26357074	.	-	.	Parent=Os05t0530701-01
Chr05	irgsp1_rep	mRNA	26366391	26367073	.	+	.	ID=Os05t0531000-01;Name=Os05t0531000-01;Locus_id=Os05g0531000;RAP-DB Gene Symbol Synonym(s)=OsS40-14;RAP-DB Gene Name Synonym(s)=S40 protein 14;CGSNL Gene Symbol=S40-14;CGSNL Gene Name=S40 PROTEIN 14;Oryzabase Gene Symbol Synonym(s)=OsS40-14;Oryzabase Gene Name Synonym(s)=S40 protein 14;Note=A member of S40 gene family%2C Leaf senescence%2C "Regulation of crosstalk among abiotic%2C biotic and developmental senescence";Transcript_evidence=AK120442;ORF_evidence=Q75K57;InterPro=Senescence regulator S40 (IPR007608);NIAS_FLcDNA=J013098O22;Manual Curation=November 12%2C 2019;Literature_PMID=31046677;Oryzabase=22084;Expression=AK120442;TENOR=Os05t0531000-01;KEGG=Os05t0531000-01;Subcellular location=nucleus (GO:0005634)
Chr05	irgsp1_rep	five_prime_UTR	26366391	26366458	.	+	.	Parent=Os05t0531000-01
Chr05	irgsp1_rep	CDS	26366459	26366908	.	+	0	Parent=Os05t0531000-01
Chr05	irgsp1_rep	three_prime_UTR	26366909	26367073	.	+	.	Parent=Os05t0531000-01
Chr05	irgsp1_rep	mRNA	26368273	26369016	.	+	.	ID=Os05t0531100-01;Name=Os05t0531100-01;Locus_id=Os05g0531100;RAP-DB Gene Symbol Synonym(s)=OsS40-1;RAP-DB Gene Name Synonym(s)=S40 protein 1;Oryzabase Gene Symbol Synonym(s)=Dfu584%2C Duf584%2C OsS40-1%2C S40-1;Oryzabase Gene Name Synonym(s)=DUF584 domain-containing protein%2C S40 protein 1;Note=A member of S40 gene family%2C Leaf senescence%2C "Regulation of crosstalk among abiotic%2C biotic and developmental senescence";Transcript_evidence=AK109325;ORF_evidence=Q75K56;InterPro=Senescence regulator S40 (IPR007608);NIAS_FLcDNA=002-188-H07;Manual Curation=November 8%2C 2019;Literature_PMID=31046677;Oryzabase=18559;Expression=AK109325;TENOR=Os05t0531100-01;KEGG=Os05t0531100-01;Subcellular location=nucleus (GO:0005634)
Chr05	irgsp1_rep	five_prime_UTR	26368273	26368317	.	+	.	Parent=Os05t0531100-01
Chr05	irgsp1_rep	CDS	26368318	26368746	.	+	0	Parent=Os05t0531100-01
Chr05	irgsp1_rep	three_prime_UTR	26368747	26369016	.	+	.	Parent=Os05t0531100-01
Chr05	irgsp1_rep	mRNA	26371480	26372831	.	+	.	ID=Os05t0531200-01;Name=Os05t0531200-01;Locus_id=Os05g0531200;Note=Pollen Ole e 1 allergen and extensin domain containing protein.;Transcript_evidence=AK103685 (DDBJ%2C Best hit);ORF_evidence=B6UHM8 (UniProt);InterPro=Pollen Ole e 1 allergen/extensin (IPR006041);NIAS_FLcDNA=J033136F17;Expression=AK103685;TENOR=Os05t0531200-01;KEGG=Os05t0531200-01
Chr05	irgsp1_rep	five_prime_UTR	26371480	26371661	.	+	.	Parent=Os05t0531200-01
Chr05	irgsp1_rep	CDS	26371662	26371902	.	+	0	Parent=Os05t0531200-01
Chr05	irgsp1_rep	CDS	26372205	26372551	.	+	2	Parent=Os05t0531200-01
Chr05	irgsp1_rep	three_prime_UTR	26372552	26372831	.	+	.	Parent=Os05t0531200-01
Chr05	irgsp1_rep	mRNA	26371597	26372835	.	+	.	ID=Os05t0531200-02;Name=Os05t0531200-02;Locus_id=Os05g0531200;Note=Pollen Ole e 1 allergen and extensin domain containing protein.;Transcript_evidence=AK063991 (DDBJ%2C Best hit),AK099359 (DDBJ%2C Best hit);ORF_evidence=B6UHM8 (UniProt);InterPro=Pollen Ole e 1 allergen/extensin (IPR006041);NIAS_FLcDNA=001-124-E05,J033046E08;TENOR=Os05t0531200-02
Chr05	irgsp1_rep	five_prime_UTR	26371597	26371661	.	+	.	Parent=Os05t0531200-02
Chr05	irgsp1_rep	CDS	26371662	26371902	.	+	0	Parent=Os05t0531200-02
Chr05	irgsp1_rep	CDS	26372205	26372551	.	+	2	Parent=Os05t0531200-02
Chr05	irgsp1_rep	three_prime_UTR	26372552	26372835	.	+	.	Parent=Os05t0531200-02
Chr05	irgsp1_rep	mRNA	26377197	26378671	.	+	.	ID=Os05t0531400-01;Name=Os05t0531400-01;Locus_id=Os05g0531400;Note=Pollen Ole e 1 allergen and extensin domain containing protein.;Transcript_evidence=AK241256 (DDBJ%2C Best hit);ORF_evidence=NP_001147175.1 (RefSeq);InterPro=Pollen Ole e 1 allergen/extensin (IPR006041);NIAS_FLcDNA=J065130M24;TENOR=Os05t0531400-01;KEGG=Os05t0531400-01
Chr05	irgsp1_rep	five_prime_UTR	26377197	26377352	.	+	.	Parent=Os05t0531400-01
Chr05	irgsp1_rep	CDS	26377353	26377578	.	+	0	Parent=Os05t0531400-01
Chr05	irgsp1_rep	CDS	26378095	26378393	.	+	2	Parent=Os05t0531400-01
Chr05	irgsp1_rep	three_prime_UTR	26378394	26378671	.	+	.	Parent=Os05t0531400-01
Chr05	irgsp1_rep	mRNA	26379885	26384301	.	+	.	ID=Os05t0531500-01;Name=Os05t0531500-01;Locus_id=Os05g0531500;Note=Similar to cDNA%2C clone: J075118M20%2C full insert sequence.;Transcript_evidence=AK120867 (DDBJ%2C Best hit);ORF_evidence=B7F980 (UniProt);InterPro=Protein of unknown function DUF616 (IPR006852);NIAS_FLcDNA=J023025I17;TENOR=Os05t0531500-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	26379885	26380240	.	+	.	Parent=Os05t0531500-01
Chr05	irgsp1_rep	CDS	26380241	26380481	.	+	0	Parent=Os05t0531500-01
Chr05	irgsp1_rep	CDS	26381245	26381487	.	+	2	Parent=Os05t0531500-01
Chr05	irgsp1_rep	CDS	26381585	26381798	.	+	2	Parent=Os05t0531500-01
Chr05	irgsp1_rep	CDS	26381904	26382013	.	+	1	Parent=Os05t0531500-01
Chr05	irgsp1_rep	CDS	26382092	26382291	.	+	2	Parent=Os05t0531500-01
Chr05	irgsp1_rep	CDS	26382739	26382842	.	+	0	Parent=Os05t0531500-01
Chr05	irgsp1_rep	CDS	26383246	26383433	.	+	1	Parent=Os05t0531500-01
Chr05	irgsp1_rep	CDS	26383514	26383713	.	+	2	Parent=Os05t0531500-01
Chr05	irgsp1_rep	CDS	26383893	26384120	.	+	0	Parent=Os05t0531500-01
Chr05	irgsp1_rep	three_prime_UTR	26384121	26384301	.	+	.	Parent=Os05t0531500-01
Chr05	irgsp1_rep	mRNA	26383248	26384301	.	+	.	ID=Os05t0531500-02;Name=Os05t0531500-02;Locus_id=Os05g0531500;Note=Similar to cDNA%2C clone: J075118M20%2C full insert sequence.;Transcript_evidence=AK059402 (DDBJ%2C Best hit);ORF_evidence=B7F980 (UniProt);InterPro=Protein of unknown function DUF616 (IPR006852);NIAS_FLcDNA=001-027-B05;TENOR=Os05t0531500-02;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	26383248	26383249	.	+	.	Parent=Os05t0531500-02
Chr05	irgsp1_rep	CDS	26383250	26383433	.	+	0	Parent=Os05t0531500-02
Chr05	irgsp1_rep	CDS	26383514	26383713	.	+	2	Parent=Os05t0531500-02
Chr05	irgsp1_rep	CDS	26383893	26384120	.	+	0	Parent=Os05t0531500-02
Chr05	irgsp1_rep	three_prime_UTR	26384121	26384301	.	+	.	Parent=Os05t0531500-02
Chr05	irgsp1_rep	mRNA	26384795	26385625	.	-	.	ID=Os05t0531600-00;Name=Os05t0531600-00;Locus_id=Os05g0531600;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001056135.2 (RefSeq);TENOR=Os05t0531600-00;KEGG=Os05t0531600-00
Chr05	irgsp1_rep	CDS	26384795	26385625	.	-	0	Parent=Os05t0531600-00
Chr05	irgsp1_rep	mRNA	26385877	26387701	.	+	.	ID=Os05t0531700-01;Name=Os05t0531700-01;Locus_id=Os05g0531700;Note=Glycoside hydrolase%2C subgroup%2C catalytic domain domain containing protein.;Transcript_evidence=AK110982 (DDBJ%2C Best hit);ORF_evidence=B9FLA2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781);NIAS_FLcDNA=002-174-C10;TENOR=Os05t0531700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	26385877	26386508	.	+	.	Parent=Os05t0531700-01
Chr05	irgsp1_rep	CDS	26386509	26386871	.	+	0	Parent=Os05t0531700-01
Chr05	irgsp1_rep	three_prime_UTR	26386872	26387701	.	+	.	Parent=Os05t0531700-01
Chr05	irgsp1_rep	mRNA	26389270	26391009	.	-	.	ID=Os05t0531800-00;Name=Os05t0531800-00;Locus_id=Os05g0531800;Note=Similar to F-box protein.;Transcript_evidence=ab initio prediction;ORF_evidence=C6L7Y7 (UniProt);TENOR=Os05t0531800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	26390963	26391009	.	-	0	Parent=Os05t0531800-00
Chr05	irgsp1_rep	CDS	26390050	26390503	.	-	1	Parent=Os05t0531800-00
Chr05	irgsp1_rep	CDS	26389794	26389952	.	-	0	Parent=Os05t0531800-00
Chr05	irgsp1_rep	CDS	26389270	26389686	.	-	0	Parent=Os05t0531800-00
Chr05	irgsp1_rep	mRNA	26407802	26410394	.	-	.	ID=Os05t0532300-00;Name=Os05t0532300-00;Locus_id=Os05g0532300;Note=Similar to F-box protein.;Transcript_evidence=ab initio prediction;ORF_evidence=C6L7Y7 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);TENOR=Os05t0532300-00
Chr05	irgsp1_rep	CDS	26410272	26410394	.	-	0	Parent=Os05t0532300-00
Chr05	irgsp1_rep	CDS	26408563	26409390	.	-	0	Parent=Os05t0532300-00
Chr05	irgsp1_rep	CDS	26408326	26408484	.	-	0	Parent=Os05t0532300-00
Chr05	irgsp1_rep	CDS	26407802	26408218	.	-	0	Parent=Os05t0532300-00
Chr05	irgsp1_rep	mRNA	26413638	26416361	.	-	.	ID=Os05t0532500-01;Name=Os05t0532500-01;Locus_id=Os05g0532500;Note=Hypothetical conserved gene.;Transcript_evidence=AK241703 (DDBJ%2C Best hit);ORF_evidence=B9FLA4 (UniProt);NIAS_FLcDNA=J065196H20;TENOR=Os05t0532500-01;KEGG=Os05t0532500-01
Chr05	irgsp1_rep	five_prime_UTR	26416303	26416361	.	-	.	Parent=Os05t0532500-01
Chr05	irgsp1_rep	CDS	26416075	26416302	.	-	0	Parent=Os05t0532500-01
Chr05	irgsp1_rep	CDS	26415532	26415642	.	-	0	Parent=Os05t0532500-01
Chr05	irgsp1_rep	CDS	26414087	26415337	.	-	0	Parent=Os05t0532500-01
Chr05	irgsp1_rep	three_prime_UTR	26413638	26414086	.	-	.	Parent=Os05t0532500-01
Chr05	irgsp1_rep	mRNA	26418688	26419417	.	-	.	ID=Os05t0532600-01;Name=Os05t0532600-01;Locus_id=Os05g0532600;CGSNL Gene Symbol=HXK2;CGSNL Gene Name=HEXOKINASE-2;Oryzabase Gene Symbol Synonym(s)=OsHXK2;Oryzabase Gene Name Synonym(s)=Hexokinase 2;Note=Similar to Hexokinase.;Transcript_evidence=AK106711 (DDBJ%2C Best hit);ORF_evidence=Q2KNB9 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Hexokinase (IPR001312),Hexokinase%2C C-terminal (IPR022673);NIAS_FLcDNA=002-114-F05;Oryzabase=9003;Expression=AK106711;TENOR=Os05t0532600-01;KEGG=Os05t0532600-01 (EC:2.7.1.1)
Chr05	irgsp1_rep	five_prime_UTR	26419416	26419417	.	-	.	Parent=Os05t0532600-01
Chr05	irgsp1_rep	CDS	26419353	26419415	.	-	0	Parent=Os05t0532600-01
Chr05	irgsp1_rep	CDS	26418922	26419266	.	-	0	Parent=Os05t0532600-01
Chr05	irgsp1_rep	three_prime_UTR	26418688	26418921	.	-	.	Parent=Os05t0532600-01
Chr05	irgsp1_rep	mRNA	26435097	26435723	.	-	.	ID=Os05t0532800-01;Name=Os05t0532800-01;Locus_id=Os05g0532800;Note=Conserved hypothetical protein.;Transcript_evidence=AK111043 (DDBJ%2C Best hit);ORF_evidence=A2Y6U5 (UniProt);NIAS_FLcDNA=002-175-B07;Expression=AK111043;TENOR=Os05t0532800-01;KEGG=Os05t0532800-01
Chr05	irgsp1_rep	five_prime_UTR	26435604	26435723	.	-	.	Parent=Os05t0532800-01
Chr05	irgsp1_rep	CDS	26435346	26435603	.	-	0	Parent=Os05t0532800-01
Chr05	irgsp1_rep	three_prime_UTR	26435097	26435345	.	-	.	Parent=Os05t0532800-01
Chr05	irgsp1_rep	mRNA	26464157	26467196	.	+	.	ID=Os05t0533100-01;Name=Os05t0533100-01;Locus_id=Os05g0533100;Note=Similar to plasminogen activator inhibitor 1 RNA-binding protein.;Transcript_evidence=AK067806 (DDBJ%2C Best hit);ORF_evidence=NP_001148933.1 (RefSeq);InterPro=Hyaluronan/mRNA-binding protein (IPR006861);NIAS_FLcDNA=J013119G19;TENOR=Os05t0533100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	26464157	26464158	.	+	.	Parent=Os05t0533100-01
Chr05	irgsp1_rep	CDS	26464159	26464285	.	+	0	Parent=Os05t0533100-01
Chr05	irgsp1_rep	CDS	26465045	26465225	.	+	2	Parent=Os05t0533100-01
Chr05	irgsp1_rep	CDS	26465304	26465445	.	+	1	Parent=Os05t0533100-01
Chr05	irgsp1_rep	CDS	26466145	26466303	.	+	0	Parent=Os05t0533100-01
Chr05	irgsp1_rep	CDS	26466388	26466450	.	+	0	Parent=Os05t0533100-01
Chr05	irgsp1_rep	CDS	26466781	26466969	.	+	0	Parent=Os05t0533100-01
Chr05	irgsp1_rep	three_prime_UTR	26466970	26467196	.	+	.	Parent=Os05t0533100-01
Chr05	irgsp1_rep	mRNA	26467532	26468125	.	-	.	ID=Os05t0533200-00;Name=Os05t0533200-00;Locus_id=Os05g0533200;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FHA3 (UniProt);TENOR=Os05t0533200-00
Chr05	irgsp1_rep	CDS	26467532	26468125	.	-	0	Parent=Os05t0533200-00
Chr05	irgsp1_rep	mRNA	26468197	26468970	.	-	.	ID=Os05t0533301-00;Name=Os05t0533301-00;Locus_id=Os05g0533301;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FHA3 (UniProt);TENOR=Os05t0533301-00
Chr05	irgsp1_rep	CDS	26468197	26468970	.	-	0	Parent=Os05t0533301-00
Chr05	irgsp1_rep	mRNA	26472208	26473772	.	-	.	ID=Os05t0533400-01;Name=Os05t0533400-01;Locus_id=Os05g0533400;Note=NB-ARC domain containing protein.;Transcript_evidence=AK107660 (DDBJ%2C Best hit);ORF_evidence=B8B083 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);NIAS_FLcDNA=002-131-G09;Expression=AK107660;TENOR=Os05t0533400-01;KEGG=Os05t0533400-01
Chr05	irgsp1_rep	five_prime_UTR	26473712	26473772	.	-	.	Parent=Os05t0533400-01
Chr05	irgsp1_rep	CDS	26472248	26473711	.	-	0	Parent=Os05t0533400-01
Chr05	irgsp1_rep	three_prime_UTR	26472208	26472247	.	-	.	Parent=Os05t0533400-01
Chr05	irgsp1_rep	mRNA	26476265	26477242	.	-	.	ID=Os05t0533450-00;Name=Os05t0533450-00;Locus_id=Os05g0533450;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FLA6 (UniProt);TENOR=Os05t0533450-00
Chr05	irgsp1_rep	CDS	26476265	26477242	.	-	0	Parent=Os05t0533450-00
Chr05	irgsp1_rep	mRNA	26480072	26481404	.	-	.	ID=Os05t0533500-01;Name=Os05t0533500-01;Locus_id=Os05g0533500;Note=Similar to Serine acetyltransferase.;Transcript_evidence=AK287779 (DDBJ%2C Best hit);ORF_evidence=B6TFX8 (UniProt);GO=Biological Process: cysteine biosynthetic process from serine (GO:0006535),Cellular Component: cytoplasm (GO:0005737),Molecular Function: serine O-acetyltransferase activity (GO:0009001),Molecular Function: transferase activity (GO:0016740);InterPro=Bacterial transferase hexapeptide repeat (IPR001451),Serine O-acetyltransferase (IPR005881),Serine acetyltransferase%2C N-terminal (IPR010493),Trimeric LpxA-like (IPR011004),Hexapeptide transferase%2C conserved site (IPR018357);NIAS_FLcDNA=J065171F21;TENOR=Os05t0533500-01;KEGG=Os05t0533500-01 (EC:2.3.1.30)
Chr05	irgsp1_rep	five_prime_UTR	26481332	26481404	.	-	.	Parent=Os05t0533500-01
Chr05	irgsp1_rep	CDS	26480387	26481331	.	-	0	Parent=Os05t0533500-01
Chr05	irgsp1_rep	three_prime_UTR	26480072	26480386	.	-	.	Parent=Os05t0533500-01
Chr05	irgsp1_rep	mRNA	26485812	26493983	.	+	.	ID=Os05t0533600-01;Name=Os05t0533600-01;Locus_id=Os05g0533600;RAP-DB Gene Symbol Synonym(s)=SSIVB%2C OsSSIVb%2C SSIV-2%2C OsSSIV-2%2C SSIVb%2C SSIV-2;RAP-DB Gene Name Synonym(s)=SOLUBLE STARCH SYNTHASE IVB%2C SOLUBLE STARCH SYNTHASE IV-2;CGSNL Gene Symbol=SSIVB;CGSNL Gene Name=SOLUBLE STARCH SYNTHASE IVB;Oryzabase Gene Symbol Synonym(s)=OsSSIVb%2C SSIV-2%2C OsSSIV-2%2C SSIVb%2C SSIV-2;Oryzabase Gene Name Synonym(s)=SOLUBLE STARCH SYNTHASE IV-2;Note=Starch synthase%2C Starch biosynthesis;Transcript_evidence=AY373258,AK067577;ORF_evidence=Q84VC7;GO=Biological Process: biosynthetic process (GO:0009058),Biological Process: glucan biosynthetic process (GO:0009250),Molecular Function: starch synthase activity (GO:0009011);InterPro=Glycogen/starch synthase%2C ADP-glucose type (IPR011835),Starch synthase%2C catalytic domain (IPR013534),Glycosyl transferase%2C family 1 (IPR001296);NIAS_FLcDNA=J013110M10;Manual Curation=March 2%2C 2010;Literature_PMID=15232694,15642712,21595523;Oryzabase=8107;Expression=AK067577;TENOR=Os05t0533600-01;KEGG=Os05t0533600-01
Chr05	irgsp1_rep	five_prime_UTR	26485812	26485892	.	+	.	Parent=Os05t0533600-01
Chr05	irgsp1_rep	CDS	26485893	26486017	.	+	0	Parent=Os05t0533600-01
Chr05	irgsp1_rep	CDS	26486513	26486621	.	+	1	Parent=Os05t0533600-01
Chr05	irgsp1_rep	CDS	26487150	26487225	.	+	0	Parent=Os05t0533600-01
Chr05	irgsp1_rep	CDS	26487315	26488260	.	+	2	Parent=Os05t0533600-01
Chr05	irgsp1_rep	CDS	26488352	26488403	.	+	1	Parent=Os05t0533600-01
Chr05	irgsp1_rep	CDS	26488733	26488855	.	+	0	Parent=Os05t0533600-01
Chr05	irgsp1_rep	CDS	26488932	26489007	.	+	0	Parent=Os05t0533600-01
Chr05	irgsp1_rep	CDS	26489096	26489280	.	+	2	Parent=Os05t0533600-01
Chr05	irgsp1_rep	CDS	26489403	26489594	.	+	0	Parent=Os05t0533600-01
Chr05	irgsp1_rep	CDS	26489683	26489751	.	+	0	Parent=Os05t0533600-01
Chr05	irgsp1_rep	CDS	26490533	26490742	.	+	0	Parent=Os05t0533600-01
Chr05	irgsp1_rep	CDS	26491021	26491146	.	+	0	Parent=Os05t0533600-01
Chr05	irgsp1_rep	CDS	26492390	26492539	.	+	0	Parent=Os05t0533600-01
Chr05	irgsp1_rep	CDS	26493071	26493132	.	+	0	Parent=Os05t0533600-01
Chr05	irgsp1_rep	CDS	26493216	26493291	.	+	1	Parent=Os05t0533600-01
Chr05	irgsp1_rep	CDS	26493363	26493533	.	+	0	Parent=Os05t0533600-01
Chr05	irgsp1_rep	three_prime_UTR	26493534	26493983	.	+	.	Parent=Os05t0533600-01
Chr05	irgsp1_rep	mRNA	26485770	26493929	.	+	.	ID=Os05t0533600-02;Name=Os05t0533600-02;Locus_id=Os05g0533600;RAP-DB Gene Symbol Synonym(s)=SSIVB%2C OsSSIVb%2C SSIV-2%2C OsSSIV-2%2C SSIVb%2C SSIV-2;RAP-DB Gene Name Synonym(s)=SOLUBLE STARCH SYNTHASE IVB%2C SOLUBLE STARCH SYNTHASE IV-2;CGSNL Gene Symbol=SSIVB;CGSNL Gene Name=SOLUBLE STARCH SYNTHASE IVB;Oryzabase Gene Symbol Synonym(s)=OsSSIVb%2C SSIV-2%2C OsSSIV-2%2C SSIVb%2C SSIV-2;Oryzabase Gene Name Synonym(s)=SOLUBLE STARCH SYNTHASE IV-2;Note=Starch synthase%2C Starch biosynthesis;Transcript_evidence=AY100471 (Zhe733%2C indica);ORF_evidence=Q8L8G7;GO=Biological Process: biosynthetic process (GO:0009058),Biological Process: glucan biosynthetic process (GO:0009250),Molecular Function: starch synthase activity (GO:0009011);InterPro=Glycogen/starch synthase%2C ADP-glucose type (IPR011835),Starch synthase%2C catalytic domain (IPR013534),Glycosyl transferase%2C family 1 (IPR001296);Manual Curation=March 2%2C 2010;Literature_PMID=15232694,15642712,21595523;Oryzabase=8107
Chr05	irgsp1_rep	five_prime_UTR	26485770	26485892	.	+	.	Parent=Os05t0533600-02
Chr05	irgsp1_rep	CDS	26485893	26486083	.	+	0	Parent=Os05t0533600-02
Chr05	irgsp1_rep	CDS	26486567	26486621	.	+	1	Parent=Os05t0533600-02
Chr05	irgsp1_rep	CDS	26487150	26487225	.	+	0	Parent=Os05t0533600-02
Chr05	irgsp1_rep	CDS	26487315	26488260	.	+	2	Parent=Os05t0533600-02
Chr05	irgsp1_rep	CDS	26488352	26488403	.	+	1	Parent=Os05t0533600-02
Chr05	irgsp1_rep	CDS	26488733	26488855	.	+	0	Parent=Os05t0533600-02
Chr05	irgsp1_rep	CDS	26488932	26489007	.	+	0	Parent=Os05t0533600-02
Chr05	irgsp1_rep	CDS	26489096	26489280	.	+	2	Parent=Os05t0533600-02
Chr05	irgsp1_rep	CDS	26489403	26489594	.	+	0	Parent=Os05t0533600-02
Chr05	irgsp1_rep	CDS	26489683	26489751	.	+	0	Parent=Os05t0533600-02
Chr05	irgsp1_rep	CDS	26490533	26490742	.	+	0	Parent=Os05t0533600-02
Chr05	irgsp1_rep	CDS	26491021	26491146	.	+	0	Parent=Os05t0533600-02
Chr05	irgsp1_rep	CDS	26492390	26492539	.	+	0	Parent=Os05t0533600-02
Chr05	irgsp1_rep	CDS	26493071	26493132	.	+	0	Parent=Os05t0533600-02
Chr05	irgsp1_rep	CDS	26493216	26493291	.	+	1	Parent=Os05t0533600-02
Chr05	irgsp1_rep	CDS	26493363	26493533	.	+	0	Parent=Os05t0533600-02
Chr05	irgsp1_rep	three_prime_UTR	26493534	26493929	.	+	.	Parent=Os05t0533600-02
Chr05	irgsp1_rep	mRNA	26494551	26497193	.	+	.	ID=Os05t0533700-01;Name=Os05t0533700-01;Locus_id=Os05g0533700;Note=NADH-ubiquinone oxidoreductase subunit PSST (Fragment).;Transcript_evidence=AK243655 (DDBJ%2C Best hit);ORF_evidence=P42027 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: NADH dehydrogenase (ubiquinone) activity (GO:0008137),Molecular Function: oxidoreductase activity%2C acting on NADH or NADPH (GO:0016651),Molecular Function: quinone binding (GO:0048038),Molecular Function: 4 iron%2C 4 sulfur cluster binding (GO:0051539);InterPro=NADH:ubiquinone oxidoreductase-like%2C 20kDa subunit (IPR006137),NADH-ubiquinone oxidoreductase%2C 20 Kd subunit (IPR006138),[NiFe]-hydrogenase-3-type complex%2C small subunit/NADH:quinone oxidoreductase%2C subunit NuoB (IPR014406);NIAS_FLcDNA=J100088K13;TENOR=Os05t0533700-01;KEGG=Os05t0533700-01 (EC:1.6.5.3%2C EC:1.6.99.3)
Chr05	irgsp1_rep	five_prime_UTR	26494551	26494641	.	+	.	Parent=Os05t0533700-01
Chr05	irgsp1_rep	CDS	26494642	26495021	.	+	0	Parent=Os05t0533700-01
Chr05	irgsp1_rep	CDS	26496598	26496832	.	+	1	Parent=Os05t0533700-01
Chr05	irgsp1_rep	three_prime_UTR	26496833	26497193	.	+	.	Parent=Os05t0533700-01
Chr05	irgsp1_rep	mRNA	26497719	26499607	.	+	.	ID=Os05t0533800-01;Name=Os05t0533800-01;Locus_id=Os05g0533800;Note=Similar to hydrogen-transporting ATP synthase%2C rotational mechanism.;Transcript_evidence=AK240907 (DDBJ%2C Best hit);ORF_evidence=B6TC18 (UniProt);GO=Biological Process: ATP synthesis coupled proton transport (GO:0015986),Cellular Component: mitochondrial proton-transporting ATP synthase complex%2C coupling factor F(o) (GO:0000276),Molecular Function: hydrogen ion transmembrane transporter activity (GO:0015078);InterPro=ATPase%2C F0 complex%2C subunit G%2C mitochondrial (IPR006808);NIAS_FLcDNA=J065036M17;TENOR=Os05t0533800-01;KEGG=Os05t0533800-01
Chr05	irgsp1_rep	five_prime_UTR	26497719	26497790	.	+	.	Parent=Os05t0533800-01
Chr05	irgsp1_rep	five_prime_UTR	26497909	26497913	.	+	.	Parent=Os05t0533800-01
Chr05	irgsp1_rep	CDS	26497914	26498104	.	+	0	Parent=Os05t0533800-01
Chr05	irgsp1_rep	CDS	26499203	26499266	.	+	1	Parent=Os05t0533800-01
Chr05	irgsp1_rep	three_prime_UTR	26499267	26499607	.	+	.	Parent=Os05t0533800-01
Chr05	irgsp1_rep	mRNA	26500746	26504264	.	+	.	ID=Os05t0533900-01;Name=Os05t0533900-01;Locus_id=Os05g0533900;Note=Similar to CLP protease regulatory subunit CLPX precursor.;Transcript_evidence=AK106477 (DDBJ%2C Best hit);ORF_evidence=NP_001147507.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: unfolded protein binding (GO:0051082);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),Clp protease%2C ATP-binding subunit ClpX (IPR004487),ATPase%2C AAA-2 (IPR013093),Clp ATPase%2C C-terminal (IPR019489);NIAS_FLcDNA=002-104-C11;Expression=AK106477;TENOR=Os05t0533900-01;KEGG=Os05t0533900-01
Chr05	irgsp1_rep	CDS	26500746	26500880	.	+	0	Parent=Os05t0533900-01
Chr05	irgsp1_rep	CDS	26501105	26501163	.	+	0	Parent=Os05t0533900-01
Chr05	irgsp1_rep	CDS	26501242	26501342	.	+	1	Parent=Os05t0533900-01
Chr05	irgsp1_rep	CDS	26501426	26501505	.	+	2	Parent=Os05t0533900-01
Chr05	irgsp1_rep	CDS	26501644	26501694	.	+	0	Parent=Os05t0533900-01
Chr05	irgsp1_rep	CDS	26502013	26502087	.	+	0	Parent=Os05t0533900-01
Chr05	irgsp1_rep	CDS	26502174	26502251	.	+	0	Parent=Os05t0533900-01
Chr05	irgsp1_rep	CDS	26502488	26502544	.	+	0	Parent=Os05t0533900-01
Chr05	irgsp1_rep	CDS	26503014	26503084	.	+	0	Parent=Os05t0533900-01
Chr05	irgsp1_rep	CDS	26503183	26503282	.	+	1	Parent=Os05t0533900-01
Chr05	irgsp1_rep	CDS	26503362	26503466	.	+	0	Parent=Os05t0533900-01
Chr05	irgsp1_rep	CDS	26503551	26503613	.	+	0	Parent=Os05t0533900-01
Chr05	irgsp1_rep	CDS	26503728	26503850	.	+	0	Parent=Os05t0533900-01
Chr05	irgsp1_rep	CDS	26503917	26504237	.	+	0	Parent=Os05t0533900-01
Chr05	irgsp1_rep	three_prime_UTR	26504238	26504264	.	+	.	Parent=Os05t0533900-01
Chr05	irgsp1_rep	mRNA	26504419	26505571	.	-	.	ID=Os05t0534000-01;Name=Os05t0534000-01;Locus_id=Os05g0534000;Note=Hypothetical conserved gene.;Transcript_evidence=AK242613 (DDBJ%2C Best hit);ORF_evidence=NP_001056146.2 (RefSeq);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J090016L03;TENOR=Os05t0534000-01;KEGG=Os05t0534000-01
Chr05	irgsp1_rep	CDS	26504705	26505571	.	-	0	Parent=Os05t0534000-01
Chr05	irgsp1_rep	three_prime_UTR	26504419	26504704	.	-	.	Parent=Os05t0534000-01
Chr05	irgsp1_rep	mRNA	26507606	26508789	.	+	.	ID=Os05t0534100-01;Name=Os05t0534100-01;Locus_id=Os05g0534100;Note=Similar to predicted protein.;Transcript_evidence=AK287574 (DDBJ%2C Best hit),AK288142 (DDBJ%2C Best hit);ORF_evidence=XP_001416200.1 (RefSeq);InterPro=Acid phosphatase/vanadium-dependent haloperoxidase-related (IPR003832);NIAS_FLcDNA=J065033J20,J080311E02;TENOR=Os05t0534100-01;KEGG=Os05t0534100-01
Chr05	irgsp1_rep	five_prime_UTR	26507606	26507659	.	+	.	Parent=Os05t0534100-01
Chr05	irgsp1_rep	CDS	26507660	26508355	.	+	0	Parent=Os05t0534100-01
Chr05	irgsp1_rep	three_prime_UTR	26508356	26508789	.	+	.	Parent=Os05t0534100-01
Chr05	irgsp1_rep	mRNA	26535935	26537873	.	+	.	ID=Os05t0534400-01;Name=Os05t0534400-01;Locus_id=Os05g0534400;CGSNL Gene Symbol=CBL4;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OsCBL4%2C SOS3%2C OsSOS3;Oryzabase Gene Name Synonym(s)=Calcineurin B-like protein 4%2C salt overly sensitive 3;Note=Similar to Calcineurin B-like protein 4 (SALT OVERLY SENSITIVE 3 protein).;Transcript_evidence=AK101368 (DDBJ%2C Best hit);ORF_evidence=Q304W7 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Recoverin (IPR001125),Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J033035L13;Oryzabase=6101;Expression=AK101368;TENOR=Os05t0534400-01;KEGG=Os05t0534400-01
Chr05	irgsp1_rep	five_prime_UTR	26535935	26535998	.	+	.	Parent=Os05t0534400-01
Chr05	irgsp1_rep	CDS	26535999	26536077	.	+	0	Parent=Os05t0534400-01
Chr05	irgsp1_rep	CDS	26536270	26536352	.	+	2	Parent=Os05t0534400-01
Chr05	irgsp1_rep	CDS	26536479	26536538	.	+	0	Parent=Os05t0534400-01
Chr05	irgsp1_rep	CDS	26536659	26536767	.	+	0	Parent=Os05t0534400-01
Chr05	irgsp1_rep	CDS	26536853	26536905	.	+	2	Parent=Os05t0534400-01
Chr05	irgsp1_rep	CDS	26537032	26537112	.	+	0	Parent=Os05t0534400-01
Chr05	irgsp1_rep	CDS	26537217	26537329	.	+	0	Parent=Os05t0534400-01
Chr05	irgsp1_rep	CDS	26537425	26537479	.	+	1	Parent=Os05t0534400-01
Chr05	irgsp1_rep	three_prime_UTR	26537480	26537873	.	+	.	Parent=Os05t0534400-01
Chr05	irgsp1_rep	mRNA	26538000	26541970	.	-	.	ID=Os05t0534500-01;Name=Os05t0534500-01;Locus_id=Os05g0534500;CGSNL Gene Symbol=HMP31;CGSNL Gene Name=HEAVY METAL-ASSOCIATED PROTEIN 31;Oryzabase Gene Symbol Synonym(s)=OsHMP31;Oryzabase Gene Name Synonym(s)=Heavy metal-associated protein 31;Note=Phospholipase C%2C phosphatidylinositol-specific %2C X region domain containing protein.;Transcript_evidence=AK107145 (DDBJ%2C Best hit);ORF_evidence=NP_001148191.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: metal ion transport (GO:0030001),Biological Process: intracellular signal transduction (GO:0035556),Molecular Function: phospholipase C activity (GO:0004629),Molecular Function: metal ion binding (GO:0046872);InterPro=Phospholipase C%2C phosphatidylinositol-specific %2C X domain (IPR000909),Heavy metal-associated domain%2C HMA (IPR006121);NIAS_FLcDNA=002-124-D07;Oryzabase=23550;Expression=AK107145;TENOR=Os05t0534500-01;KEGG=Os05t0534500-01
Chr05	irgsp1_rep	five_prime_UTR	26541709	26541970	.	-	.	Parent=Os05t0534500-01
Chr05	irgsp1_rep	CDS	26541463	26541708	.	-	0	Parent=Os05t0534500-01
Chr05	irgsp1_rep	CDS	26541254	26541329	.	-	0	Parent=Os05t0534500-01
Chr05	irgsp1_rep	CDS	26538752	26538912	.	-	2	Parent=Os05t0534500-01
Chr05	irgsp1_rep	three_prime_UTR	26538000	26538751	.	-	.	Parent=Os05t0534500-01
Chr05	irgsp1_rep	mRNA	26544675	26552137	.	-	.	ID=Os05t0534600-01;Name=Os05t0534600-01;Locus_id=Os05g0534600;Note=CASC3/Barentsz eIF4AIII binding domain containing protein.;Transcript_evidence=AK068203 (DDBJ%2C Best hit);ORF_evidence=Q6I5G3 (UniProt);InterPro=CASC3/Barentsz eIF4AIII binding (IPR018545);NIAS_FLcDNA=J013146A03;Expression=AK068203;TENOR=Os05t0534600-01;KEGG=Os05t0534600-01
Chr05	irgsp1_rep	five_prime_UTR	26551933	26552137	.	-	.	Parent=Os05t0534600-01
Chr05	irgsp1_rep	CDS	26551430	26551932	.	-	0	Parent=Os05t0534600-01
Chr05	irgsp1_rep	CDS	26549586	26549688	.	-	1	Parent=Os05t0534600-01
Chr05	irgsp1_rep	CDS	26549093	26549499	.	-	0	Parent=Os05t0534600-01
Chr05	irgsp1_rep	CDS	26548235	26548995	.	-	1	Parent=Os05t0534600-01
Chr05	irgsp1_rep	CDS	26547798	26547912	.	-	2	Parent=Os05t0534600-01
Chr05	irgsp1_rep	CDS	26547517	26547639	.	-	1	Parent=Os05t0534600-01
Chr05	irgsp1_rep	CDS	26546530	26546573	.	-	1	Parent=Os05t0534600-01
Chr05	irgsp1_rep	CDS	26546367	26546412	.	-	2	Parent=Os05t0534600-01
Chr05	irgsp1_rep	CDS	26546255	26546282	.	-	1	Parent=Os05t0534600-01
Chr05	irgsp1_rep	three_prime_UTR	26546111	26546254	.	-	.	Parent=Os05t0534600-01
Chr05	irgsp1_rep	three_prime_UTR	26545229	26545311	.	-	.	Parent=Os05t0534600-01
Chr05	irgsp1_rep	three_prime_UTR	26544675	26545153	.	-	.	Parent=Os05t0534600-01
Chr05	irgsp1_rep	mRNA	26544666	26552096	.	-	.	ID=Os05t0534600-02;Name=Os05t0534600-02;Locus_id=Os05g0534600;Note=CASC3/Barentsz eIF4AIII binding domain containing protein.;Transcript_evidence=AK066927 (DDBJ%2C Best hit);ORF_evidence=Q6I5G3 (UniProt);InterPro=CASC3/Barentsz eIF4AIII binding (IPR018545);NIAS_FLcDNA=J013091G21;TENOR=Os05t0534600-02
Chr05	irgsp1_rep	five_prime_UTR	26551933	26552096	.	-	.	Parent=Os05t0534600-02
Chr05	irgsp1_rep	CDS	26551430	26551932	.	-	0	Parent=Os05t0534600-02
Chr05	irgsp1_rep	CDS	26549586	26549688	.	-	1	Parent=Os05t0534600-02
Chr05	irgsp1_rep	CDS	26549093	26549499	.	-	0	Parent=Os05t0534600-02
Chr05	irgsp1_rep	CDS	26548235	26548995	.	-	1	Parent=Os05t0534600-02
Chr05	irgsp1_rep	CDS	26547798	26547912	.	-	2	Parent=Os05t0534600-02
Chr05	irgsp1_rep	CDS	26547517	26547639	.	-	1	Parent=Os05t0534600-02
Chr05	irgsp1_rep	CDS	26546530	26546573	.	-	1	Parent=Os05t0534600-02
Chr05	irgsp1_rep	CDS	26546367	26546412	.	-	2	Parent=Os05t0534600-02
Chr05	irgsp1_rep	CDS	26546255	26546282	.	-	1	Parent=Os05t0534600-02
Chr05	irgsp1_rep	three_prime_UTR	26546111	26546254	.	-	.	Parent=Os05t0534600-02
Chr05	irgsp1_rep	three_prime_UTR	26545229	26545311	.	-	.	Parent=Os05t0534600-02
Chr05	irgsp1_rep	three_prime_UTR	26544666	26545153	.	-	.	Parent=Os05t0534600-02
Chr05	irgsp1_rep	mRNA	26554982	26560012	.	+	.	ID=Os05t0534800-01;Name=Os05t0534800-01;Locus_id=Os05g0534800;Note=Hypothetical conserved gene.;Transcript_evidence=AK287614 (DDBJ%2C Best hit);ORF_evidence=NP_001056151.1 (RefSeq);GO=Biological Process: regulation of ARF GTPase activity (GO:0032312),Molecular Function: ARF GTPase activator activity (GO:0008060),Molecular Function: zinc ion binding (GO:0008270);InterPro=Arf GTPase activating protein (IPR001164);NIAS_FLcDNA=J065062F19;TENOR=Os05t0534800-01;KEGG=Os05t0534800-01
Chr05	irgsp1_rep	five_prime_UTR	26554982	26555246	.	+	.	Parent=Os05t0534800-01
Chr05	irgsp1_rep	five_prime_UTR	26556372	26556584	.	+	.	Parent=Os05t0534800-01
Chr05	irgsp1_rep	CDS	26556585	26556683	.	+	0	Parent=Os05t0534800-01
Chr05	irgsp1_rep	CDS	26556773	26556925	.	+	0	Parent=Os05t0534800-01
Chr05	irgsp1_rep	three_prime_UTR	26556926	26557011	.	+	.	Parent=Os05t0534800-01
Chr05	irgsp1_rep	three_prime_UTR	26557111	26558309	.	+	.	Parent=Os05t0534800-01
Chr05	irgsp1_rep	three_prime_UTR	26558400	26560012	.	+	.	Parent=Os05t0534800-01
Chr05	irgsp1_rep	mRNA	26560937	26566558	.	+	.	ID=Os05t0534900-01;Name=Os05t0534900-01;Locus_id=Os05g0534900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK242723 (DDBJ%2C Best hit);ORF_evidence=B9FHB0 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J090045G15;TENOR=Os05t0534900-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	26560937	26561106	.	+	.	Parent=Os05t0534900-01
Chr05	irgsp1_rep	CDS	26561107	26563755	.	+	0	Parent=Os05t0534900-01
Chr05	irgsp1_rep	three_prime_UTR	26563756	26564073	.	+	.	Parent=Os05t0534900-01
Chr05	irgsp1_rep	three_prime_UTR	26564170	26566558	.	+	.	Parent=Os05t0534900-01
Chr05	irgsp1_rep	mRNA	26570425	26573958	.	-	.	ID=Os05t0535100-01;Name=Os05t0535100-01;Locus_id=Os05g0535100;Oryzabase Gene Name Synonym(s)=Beta-1%2C 3-glucanase-like protein;Note=Similar to Beta-1%2C3-glucanase-like protein.;Transcript_evidence=AK063362 (DDBJ%2C Best hit);ORF_evidence=NP_001152213.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-114-D03;Oryzabase=20415;Expression=AK063362;TENOR=Os05t0535100-01;KEGG=Os05t0535100-01
Chr05	irgsp1_rep	five_prime_UTR	26573825	26573958	.	-	.	Parent=Os05t0535100-01
Chr05	irgsp1_rep	CDS	26573466	26573824	.	-	0	Parent=Os05t0535100-01
Chr05	irgsp1_rep	CDS	26570916	26572023	.	-	1	Parent=Os05t0535100-01
Chr05	irgsp1_rep	three_prime_UTR	26570425	26570915	.	-	.	Parent=Os05t0535100-01
Chr05	irgsp1_rep	mRNA	26575670	26578439	.	+	.	ID=Os05t0535200-01;Name=Os05t0535200-01;Locus_id=Os05g0535200;Oryzabase Gene Symbol Synonym(s)=OsFbox269%2C Os_F0444;Oryzabase Gene Name Synonym(s)=F-box protein 269;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK070696 (DDBJ%2C Best hit);ORF_evidence=C6L7Y7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023057L12;Oryzabase=17050;Expression=AK070696;TENOR=Os05t0535200-01;KEGG=Os05t0535200-01
Chr05	irgsp1_rep	five_prime_UTR	26575670	26575877	.	+	.	Parent=Os05t0535200-01
Chr05	irgsp1_rep	CDS	26575878	26575932	.	+	0	Parent=Os05t0535200-01
Chr05	irgsp1_rep	CDS	26576416	26576522	.	+	2	Parent=Os05t0535200-01
Chr05	irgsp1_rep	CDS	26576603	26577436	.	+	0	Parent=Os05t0535200-01
Chr05	irgsp1_rep	CDS	26577570	26577782	.	+	0	Parent=Os05t0535200-01
Chr05	irgsp1_rep	three_prime_UTR	26577783	26578439	.	+	.	Parent=Os05t0535200-01
Chr05	irgsp1_rep	mRNA	26580141	26583006	.	+	.	ID=Os05t0535300-01;Name=Os05t0535300-01;Locus_id=Os05g0535300;Note=Similar to F-box protein.;Transcript_evidence=AK318534 (DDBJ%2C Best hit);ORF_evidence=C6L7Y7 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J065188K18;TENOR=Os05t0535300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	26580141	26580442	.	+	.	Parent=Os05t0535300-01
Chr05	irgsp1_rep	five_prime_UTR	26580915	26581022	.	+	.	Parent=Os05t0535300-01
Chr05	irgsp1_rep	CDS	26581023	26581139	.	+	0	Parent=Os05t0535300-01
Chr05	irgsp1_rep	CDS	26581220	26581441	.	+	0	Parent=Os05t0535300-01
Chr05	irgsp1_rep	three_prime_UTR	26581442	26582055	.	+	.	Parent=Os05t0535300-01
Chr05	irgsp1_rep	three_prime_UTR	26582155	26582313	.	+	.	Parent=Os05t0535300-01
Chr05	irgsp1_rep	three_prime_UTR	26582420	26583006	.	+	.	Parent=Os05t0535300-01
Chr05	irgsp1_rep	mRNA	26584551	26588134	.	+	.	ID=Os05t0535400-00;Name=Os05t0535400-00;Locus_id=Os05g0535400;Note=Choline/ethanolamine kinase family protein.;Transcript_evidence=tplb0008j17 (Wheat FLcDNA);ORF_evidence=B6U018 (UniProt);GO=Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Choline/ethanolamine kinase (IPR002573),Choline kinase%2C N-terminal (IPR007521),Protein kinase-like domain (IPR011009);TENOR=Os05t0535400-00;KEGG=Os05t0535400-00 (EC:2.7.1.32)
Chr05	irgsp1_rep	five_prime_UTR	26584551	26584624	.	+	.	Parent=Os05t0535400-00
Chr05	irgsp1_rep	CDS	26584625	26584990	.	+	0	Parent=Os05t0535400-00
Chr05	irgsp1_rep	CDS	26586574	26586695	.	+	0	Parent=Os05t0535400-00
Chr05	irgsp1_rep	CDS	26586814	26587009	.	+	1	Parent=Os05t0535400-00
Chr05	irgsp1_rep	CDS	26587431	26587548	.	+	0	Parent=Os05t0535400-00
Chr05	irgsp1_rep	CDS	26587658	26587705	.	+	2	Parent=Os05t0535400-00
Chr05	irgsp1_rep	CDS	26587784	26587884	.	+	2	Parent=Os05t0535400-00
Chr05	irgsp1_rep	CDS	26587967	26588074	.	+	0	Parent=Os05t0535400-00
Chr05	irgsp1_rep	three_prime_UTR	26588075	26588134	.	+	.	Parent=Os05t0535400-00
Chr05	irgsp1_rep	mRNA	26591792	26596379	.	+	.	ID=Os05t0535500-01;Name=Os05t0535500-01;Locus_id=Os05g0535500;Note=tRNAHis guanylyltransferase domain containing protein.;Transcript_evidence=AK063545 (DDBJ%2C Best hit);ORF_evidence=B9FLB3 (UniProt);InterPro=tRNAHis guanylyltransferase (IPR007537);NIAS_FLcDNA=001-117-D02;TENOR=Os05t0535500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	26591792	26591914	.	+	.	Parent=Os05t0535500-01
Chr05	irgsp1_rep	five_prime_UTR	26592116	26592167	.	+	.	Parent=Os05t0535500-01
Chr05	irgsp1_rep	CDS	26592168	26592274	.	+	0	Parent=Os05t0535500-01
Chr05	irgsp1_rep	CDS	26592623	26592754	.	+	1	Parent=Os05t0535500-01
Chr05	irgsp1_rep	CDS	26593020	26593064	.	+	1	Parent=Os05t0535500-01
Chr05	irgsp1_rep	CDS	26593164	26593333	.	+	1	Parent=Os05t0535500-01
Chr05	irgsp1_rep	CDS	26593568	26593653	.	+	2	Parent=Os05t0535500-01
Chr05	irgsp1_rep	CDS	26593742	26593849	.	+	0	Parent=Os05t0535500-01
Chr05	irgsp1_rep	CDS	26594469	26594598	.	+	0	Parent=Os05t0535500-01
Chr05	irgsp1_rep	CDS	26594703	26594802	.	+	2	Parent=Os05t0535500-01
Chr05	irgsp1_rep	CDS	26594889	26595020	.	+	1	Parent=Os05t0535500-01
Chr05	irgsp1_rep	CDS	26595300	26595344	.	+	1	Parent=Os05t0535500-01
Chr05	irgsp1_rep	CDS	26595428	26595597	.	+	1	Parent=Os05t0535500-01
Chr05	irgsp1_rep	CDS	26595720	26595805	.	+	2	Parent=Os05t0535500-01
Chr05	irgsp1_rep	CDS	26595904	26596011	.	+	0	Parent=Os05t0535500-01
Chr05	irgsp1_rep	CDS	26596121	26596261	.	+	0	Parent=Os05t0535500-01
Chr05	irgsp1_rep	three_prime_UTR	26596262	26596379	.	+	.	Parent=Os05t0535500-01
Chr05	irgsp1_rep	mRNA	26592148	26595020	.	-	.	ID=Os05t0535533-00;Name=Os05t0535533-00;Locus_id=Os05g0535533;Note=Hypothetical protein.;Transcript_evidence=tplb0021g11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0535533-00
Chr05	irgsp1_rep	five_prime_UTR	26594889	26595020	.	-	.	Parent=Os05t0535533-00
Chr05	irgsp1_rep	five_prime_UTR	26594658	26594802	.	-	.	Parent=Os05t0535533-00
Chr05	irgsp1_rep	five_prime_UTR	26594489	26594588	.	-	.	Parent=Os05t0535533-00
Chr05	irgsp1_rep	five_prime_UTR	26593740	26593855	.	-	.	Parent=Os05t0535533-00
Chr05	irgsp1_rep	five_prime_UTR	26593579	26593651	.	-	.	Parent=Os05t0535533-00
Chr05	irgsp1_rep	five_prime_UTR	26593160	26593343	.	-	.	Parent=Os05t0535533-00
Chr05	irgsp1_rep	CDS	26593133	26593159	.	-	0	Parent=Os05t0535533-00
Chr05	irgsp1_rep	CDS	26592637	26592766	.	-	0	Parent=Os05t0535533-00
Chr05	irgsp1_rep	CDS	26592148	26592283	.	-	2	Parent=Os05t0535533-00
Chr05	irgsp1_rep	mRNA	26596694	26601564	.	+	.	ID=Os05t0535566-00;Name=Os05t0535566-00;Locus_id=Os05g0535566;Note=Non-protein coding transcript.;Transcript_evidence=tplb0060n08 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os05t0535566-00
Chr05	irgsp1_rep	exon	26596694	26596930	.	+	.	Parent=Os05t0535566-00
Chr05	irgsp1_rep	exon	26597033	26597196	.	+	.	Parent=Os05t0535566-00
Chr05	irgsp1_rep	exon	26597269	26597377	.	+	.	Parent=Os05t0535566-00
Chr05	irgsp1_rep	exon	26597628	26597809	.	+	.	Parent=Os05t0535566-00
Chr05	irgsp1_rep	exon	26598091	26598346	.	+	.	Parent=Os05t0535566-00
Chr05	irgsp1_rep	exon	26598476	26598871	.	+	.	Parent=Os05t0535566-00
Chr05	irgsp1_rep	exon	26599181	26599270	.	+	.	Parent=Os05t0535566-00
Chr05	irgsp1_rep	exon	26599526	26599642	.	+	.	Parent=Os05t0535566-00
Chr05	irgsp1_rep	exon	26601028	26601274	.	+	.	Parent=Os05t0535566-00
Chr05	irgsp1_rep	exon	26601438	26601564	.	+	.	Parent=Os05t0535566-00
Chr05	irgsp1_rep	mRNA	26597947	26601563	.	-	.	ID=Os05t0535600-00;Name=Os05t0535600-00;Locus_id=Os05g0535600;Note=Similar to Inositol-1%2C4%2C5-triphosphate-5-phosphatase.;Transcript_evidence=EU947617 (DDBJ);ORF_evidence=A8IDW2 (UniProt);InterPro=Endonuclease/exonuclease/phosphatase (IPR005135);TENOR=Os05t0535600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	26601441	26601563	.	-	.	Parent=Os05t0535600-00
Chr05	irgsp1_rep	five_prime_UTR	26601099	26601300	.	-	.	Parent=Os05t0535600-00
Chr05	irgsp1_rep	five_prime_UTR	26600240	26600298	.	-	.	Parent=Os05t0535600-00
Chr05	irgsp1_rep	five_prime_UTR	26599617	26599633	.	-	.	Parent=Os05t0535600-00
Chr05	irgsp1_rep	CDS	26599546	26599616	.	-	0	Parent=Os05t0535600-00
Chr05	irgsp1_rep	CDS	26599181	26599285	.	-	1	Parent=Os05t0535600-00
Chr05	irgsp1_rep	CDS	26597947	26598871	.	-	1	Parent=Os05t0535600-00
Chr05	irgsp1_rep	mRNA	26604986	26607206	.	-	.	ID=Os05t0535700-01;Name=Os05t0535700-01;Locus_id=Os05g0535700;Note=Conserved hypothetical protein.;Transcript_evidence=AK062545 (DDBJ%2C Best hit);ORF_evidence=B9FHB6 (UniProt);NIAS_FLcDNA=001-104-G06;TENOR=Os05t0535700-01
Chr05	irgsp1_rep	five_prime_UTR	26607099	26607206	.	-	.	Parent=Os05t0535700-01
Chr05	irgsp1_rep	CDS	26606976	26607098	.	-	0	Parent=Os05t0535700-01
Chr05	irgsp1_rep	CDS	26605226	26605345	.	-	0	Parent=Os05t0535700-01
Chr05	irgsp1_rep	three_prime_UTR	26604986	26605225	.	-	.	Parent=Os05t0535700-01
Chr05	irgsp1_rep	mRNA	26604993	26607147	.	-	.	ID=Os05t0535700-02;Name=Os05t0535700-02;Locus_id=Os05g0535700;Note=Conserved hypothetical protein.;Transcript_evidence=AK061590 (DDBJ%2C Best hit);ORF_evidence=B9FHB6 (UniProt);NIAS_FLcDNA=001-021-H05;TENOR=Os05t0535700-02
Chr05	irgsp1_rep	five_prime_UTR	26607099	26607147	.	-	.	Parent=Os05t0535700-02
Chr05	irgsp1_rep	CDS	26606976	26607098	.	-	0	Parent=Os05t0535700-02
Chr05	irgsp1_rep	CDS	26605226	26605345	.	-	0	Parent=Os05t0535700-02
Chr05	irgsp1_rep	three_prime_UTR	26604993	26605225	.	-	.	Parent=Os05t0535700-02
Chr05	irgsp1_rep	mRNA	26608277	26612344	.	+	.	ID=Os05t0535800-00;Name=Os05t0535800-00;Locus_id=Os05g0535800;Note=Similar to F14O23.10 protein.;Transcript_evidence=AK361636 (DDBJ);ORF_evidence=Q9M9H4 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=Ribosomal protein S1%2C RNA-binding domain (IPR003029),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),RNA-binding domain%2C S1 (IPR022967);TENOR=Os05t0535800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	26608277	26608283	.	+	.	Parent=Os05t0535800-00
Chr05	irgsp1_rep	CDS	26608284	26609138	.	+	0	Parent=Os05t0535800-00
Chr05	irgsp1_rep	CDS	26610084	26610158	.	+	0	Parent=Os05t0535800-00
Chr05	irgsp1_rep	CDS	26610231	26610302	.	+	0	Parent=Os05t0535800-00
Chr05	irgsp1_rep	CDS	26610473	26610553	.	+	0	Parent=Os05t0535800-00
Chr05	irgsp1_rep	CDS	26610735	26610832	.	+	0	Parent=Os05t0535800-00
Chr05	irgsp1_rep	CDS	26611483	26611608	.	+	1	Parent=Os05t0535800-00
Chr05	irgsp1_rep	CDS	26611720	26611768	.	+	1	Parent=Os05t0535800-00
Chr05	irgsp1_rep	CDS	26612141	26612344	.	+	0	Parent=Os05t0535800-00
Chr05	irgsp1_rep	mRNA	26616540	26620854	.	+	.	ID=Os05t0535900-01;Name=Os05t0535900-01;Locus_id=Os05g0535900;Note=IQ calmodulin-binding region domain containing protein.;Transcript_evidence=AK101555 (DDBJ%2C Best hit);ORF_evidence=NP_001148966.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);NIAS_FLcDNA=J033050A17;Expression=AK101555;TENOR=Os05t0535900-01;KEGG=Os05t0535900-01
Chr05	irgsp1_rep	five_prime_UTR	26616540	26616718	.	+	.	Parent=Os05t0535900-01
Chr05	irgsp1_rep	five_prime_UTR	26617082	26617118	.	+	.	Parent=Os05t0535900-01
Chr05	irgsp1_rep	CDS	26617119	26617208	.	+	0	Parent=Os05t0535900-01
Chr05	irgsp1_rep	CDS	26617351	26617635	.	+	0	Parent=Os05t0535900-01
Chr05	irgsp1_rep	CDS	26617794	26617997	.	+	0	Parent=Os05t0535900-01
Chr05	irgsp1_rep	CDS	26618425	26618481	.	+	0	Parent=Os05t0535900-01
Chr05	irgsp1_rep	CDS	26618648	26619704	.	+	0	Parent=Os05t0535900-01
Chr05	irgsp1_rep	CDS	26620417	26620448	.	+	2	Parent=Os05t0535900-01
Chr05	irgsp1_rep	three_prime_UTR	26620449	26620854	.	+	.	Parent=Os05t0535900-01
Chr05	irgsp1_rep	mRNA	26616585	26620808	.	+	.	ID=Os05t0535900-02;Name=Os05t0535900-02;Locus_id=Os05g0535900;Note=IQ calmodulin-binding region domain containing protein.;Transcript_evidence=AK101539 (DDBJ%2C Best hit);ORF_evidence=NP_001148966.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);NIAS_FLcDNA=J033048G06;Expression=AK101539;TENOR=Os05t0535900-02;KEGG=Os05t0535900-02
Chr05	irgsp1_rep	five_prime_UTR	26616585	26616718	.	+	.	Parent=Os05t0535900-02
Chr05	irgsp1_rep	five_prime_UTR	26617082	26617118	.	+	.	Parent=Os05t0535900-02
Chr05	irgsp1_rep	CDS	26617119	26617208	.	+	0	Parent=Os05t0535900-02
Chr05	irgsp1_rep	CDS	26617351	26617635	.	+	0	Parent=Os05t0535900-02
Chr05	irgsp1_rep	CDS	26617794	26617997	.	+	0	Parent=Os05t0535900-02
Chr05	irgsp1_rep	CDS	26618425	26618481	.	+	0	Parent=Os05t0535900-02
Chr05	irgsp1_rep	CDS	26618648	26619704	.	+	0	Parent=Os05t0535900-02
Chr05	irgsp1_rep	CDS	26620417	26620448	.	+	2	Parent=Os05t0535900-02
Chr05	irgsp1_rep	three_prime_UTR	26620449	26620808	.	+	.	Parent=Os05t0535900-02
Chr05	irgsp1_rep	mRNA	26622124	26623094	.	+	.	ID=Os05t0536000-01;Name=Os05t0536000-01;Locus_id=Os05g0536000;Note=Hypothetical conserved gene.;Transcript_evidence=AK109124 (DDBJ%2C Best hit);ORF_evidence=B8B097 (UniProt);NIAS_FLcDNA=002-155-D03;Expression=AK109124;TENOR=Os05t0536000-01;KEGG=Os05t0536000-01
Chr05	irgsp1_rep	five_prime_UTR	26622124	26622125	.	+	.	Parent=Os05t0536000-01
Chr05	irgsp1_rep	CDS	26622126	26622734	.	+	0	Parent=Os05t0536000-01
Chr05	irgsp1_rep	three_prime_UTR	26622735	26623094	.	+	.	Parent=Os05t0536000-01
Chr05	irgsp1_rep	mRNA	26626634	26627432	.	+	.	ID=Os05t0536101-01;Name=Os05t0536101-01;Locus_id=Os05g0536101;Note=Hypothetical gene.;Transcript_evidence=AK242535 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J080316L04;TENOR=Os05t0536101-01;KEGG=Os05t0536101-01
Chr05	irgsp1_rep	five_prime_UTR	26626634	26627144	.	+	.	Parent=Os05t0536101-01
Chr05	irgsp1_rep	CDS	26627145	26627366	.	+	0	Parent=Os05t0536101-01
Chr05	irgsp1_rep	three_prime_UTR	26627367	26627432	.	+	.	Parent=Os05t0536101-01
Chr05	irgsp1_rep	mRNA	26628171	26631476	.	+	.	ID=Os05t0536200-01;Name=Os05t0536200-01;Locus_id=Os05g0536200;Oryzabase Gene Symbol Synonym(s)=OSVDAC2%2C osvdac2%2C OsVDAC2%2C VDAC2;Oryzabase Gene Name Synonym(s)=voltage-dependent anion channel 2%2C voltage-dependent anion-selective channel 2;Note=Voltage-dependent anion channel.;Transcript_evidence=AK071833 (DDBJ%2C Best hit);ORF_evidence=Q8VXC7 (UniProt);GO=Biological Process: anion transport (GO:0006820),Biological Process: regulation of anion transport (GO:0044070),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial outer membrane (GO:0005741),Molecular Function: voltage-gated anion channel activity (GO:0008308);InterPro=Porin%2C eukaryotic type (IPR001925);NIAS_FLcDNA=J023121K13;Oryzabase=14522;Expression=AK071833;TENOR=Os05t0536200-01;KEGG=Os05t0536200-01
Chr05	irgsp1_rep	five_prime_UTR	26628171	26628251	.	+	.	Parent=Os05t0536200-01
Chr05	irgsp1_rep	CDS	26628252	26628315	.	+	0	Parent=Os05t0536200-01
Chr05	irgsp1_rep	CDS	26628469	26628536	.	+	2	Parent=Os05t0536200-01
Chr05	irgsp1_rep	CDS	26629856	26629966	.	+	0	Parent=Os05t0536200-01
Chr05	irgsp1_rep	CDS	26630099	26630188	.	+	0	Parent=Os05t0536200-01
Chr05	irgsp1_rep	CDS	26630276	26630484	.	+	0	Parent=Os05t0536200-01
Chr05	irgsp1_rep	CDS	26630872	26631172	.	+	1	Parent=Os05t0536200-01
Chr05	irgsp1_rep	three_prime_UTR	26631173	26631476	.	+	.	Parent=Os05t0536200-01
Chr05	irgsp1_rep	mRNA	26628468	26631172	.	-	.	ID=Os05t0536225-00;Name=Os05t0536225-00;Locus_id=Os05g0536225;Note=Hypothetical gene.;Transcript_evidence=BT016888 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0536225-00;KEGG=Os05t0536225-00
Chr05	irgsp1_rep	five_prime_UTR	26630999	26631172	.	-	.	Parent=Os05t0536225-00
Chr05	irgsp1_rep	CDS	26630851	26630998	.	-	0	Parent=Os05t0536225-00
Chr05	irgsp1_rep	CDS	26630291	26630456	.	-	2	Parent=Os05t0536225-00
Chr05	irgsp1_rep	CDS	26630153	26630201	.	-	1	Parent=Os05t0536225-00
Chr05	irgsp1_rep	three_prime_UTR	26630110	26630152	.	-	.	Parent=Os05t0536225-00
Chr05	irgsp1_rep	three_prime_UTR	26629864	26629978	.	-	.	Parent=Os05t0536225-00
Chr05	irgsp1_rep	three_prime_UTR	26628468	26628544	.	-	.	Parent=Os05t0536225-00
Chr05	irgsp1_rep	mRNA	26631889	26633757	.	-	.	ID=Os05t0536250-01;Name=Os05t0536250-01;Locus_id=Os05g0536250;RAP-DB Gene Symbol Synonym(s)=OsWRI3;CGSNL Gene Symbol=WRI3;CGSNL Gene Name=WRINKLED3;Oryzabase Gene Symbol Synonym(s)=AP2/EREBP52%2C AP2/EREBP#052%2C ERF52%2C OsWRI3;Oryzabase Gene Name Synonym(s)=APETALA2/ethylene-responsive element binding protein 52%2C WRINKLED 3%2C WRI1 like protein 3;Note=WRI1 homolog%2C Cuticular synthesis in rice leaves;Transcript_evidence=AY685112 (Dongjin);ORF_evidence=Q2TQ39;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-binding transcription factor activity (GO:0003700);InterPro=AP2/ERF domain superfamily (IPR036955),DNA-binding domain superfamily (IPR016177),AP2/ERF domain (IPR001471);Manual Curation=February 25%2C 2020;Literature_PMID=31277505;Oryzabase=10660;TENOR=Os05t0536250-00;KEGG=Os05t0536250-00
Chr05	irgsp1_rep	CDS	26633513	26633757	.	-	0	Parent=Os05t0536250-01
Chr05	irgsp1_rep	CDS	26633336	26633460	.	-	1	Parent=Os05t0536250-01
Chr05	irgsp1_rep	CDS	26633133	26633230	.	-	2	Parent=Os05t0536250-01
Chr05	irgsp1_rep	CDS	26632972	26633045	.	-	0	Parent=Os05t0536250-01
Chr05	irgsp1_rep	CDS	26632797	26632847	.	-	1	Parent=Os05t0536250-01
Chr05	irgsp1_rep	CDS	26632635	26632711	.	-	1	Parent=Os05t0536250-01
Chr05	irgsp1_rep	CDS	26631889	26632514	.	-	2	Parent=Os05t0536250-01
Chr05	irgsp1_rep	mRNA	26634885	26640861	.	-	.	ID=Os05t0536400-01;Name=Os05t0536400-01;Locus_id=Os05g0536400;Note=Similar to Delta-1-pyrroline-5-carboxylate dehydrogenase.;Transcript_evidence=AK121765 (DDBJ%2C Best hit);ORF_evidence=Q8W0Q4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620);InterPro=Aldehyde dehydrogenase domain (IPR015590),Aldehyde dehydrogenase%2C conserved site (IPR016160),Aldehyde/histidinol dehydrogenase (IPR016161),Aldehyde dehydrogenase%2C N-terminal (IPR016162),Aldehyde dehydrogenase%2C C-terminal (IPR016163);NIAS_FLcDNA=J033091O16;TENOR=Os05t0536400-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	26640703	26640861	.	-	.	Parent=Os05t0536400-01
Chr05	irgsp1_rep	CDS	26640629	26640702	.	-	0	Parent=Os05t0536400-01
Chr05	irgsp1_rep	CDS	26640285	26640364	.	-	1	Parent=Os05t0536400-01
Chr05	irgsp1_rep	CDS	26639637	26639740	.	-	2	Parent=Os05t0536400-01
Chr05	irgsp1_rep	CDS	26639325	26639392	.	-	0	Parent=Os05t0536400-01
Chr05	irgsp1_rep	CDS	26638647	26638704	.	-	1	Parent=Os05t0536400-01
Chr05	irgsp1_rep	CDS	26638333	26638446	.	-	0	Parent=Os05t0536400-01
Chr05	irgsp1_rep	CDS	26637993	26638076	.	-	0	Parent=Os05t0536400-01
Chr05	irgsp1_rep	CDS	26637666	26637884	.	-	0	Parent=Os05t0536400-01
Chr05	irgsp1_rep	CDS	26637070	26637201	.	-	0	Parent=Os05t0536400-01
Chr05	irgsp1_rep	CDS	26636883	26636972	.	-	0	Parent=Os05t0536400-01
Chr05	irgsp1_rep	CDS	26636440	26636529	.	-	0	Parent=Os05t0536400-01
Chr05	irgsp1_rep	CDS	26635892	26636101	.	-	0	Parent=Os05t0536400-01
Chr05	irgsp1_rep	CDS	26635514	26635624	.	-	0	Parent=Os05t0536400-01
Chr05	irgsp1_rep	CDS	26635228	26635307	.	-	0	Parent=Os05t0536400-01
Chr05	irgsp1_rep	CDS	26635003	26635141	.	-	1	Parent=Os05t0536400-01
Chr05	irgsp1_rep	three_prime_UTR	26634885	26635002	.	-	.	Parent=Os05t0536400-01
Chr05	irgsp1_rep	mRNA	26659584	26661459	.	-	.	ID=Os05t0536800-01;Name=Os05t0536800-01;Locus_id=Os05g0536800;Oryzabase Gene Symbol Synonym(s)=OsFbox270%2C Os_F0454;Oryzabase Gene Name Synonym(s)=F-box protein 270;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK107196 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-125-A09;Oryzabase=17051;TENOR=Os05t0536800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	26659819	26661459	.	-	0	Parent=Os05t0536800-01
Chr05	irgsp1_rep	three_prime_UTR	26659584	26659818	.	-	.	Parent=Os05t0536800-01
Chr05	irgsp1_rep	mRNA	26664617	26666561	.	+	.	ID=Os05t0536900-01;Name=Os05t0536900-01;Locus_id=Os05g0536900;Oryzabase Gene Symbol Synonym(s)=OsRab7A1;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab7A1;Note=Similar to RAB7A.;Transcript_evidence=AK105140 (DDBJ%2C Best hit);ORF_evidence=Q40211 (UniProt);GO=Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225);NIAS_FLcDNA=001-102-H02;Oryzabase=11086;Expression=AK105140;TENOR=Os05t0536900-01;KEGG=Os05t0536900-01
Chr05	irgsp1_rep	five_prime_UTR	26664617	26664636	.	+	.	Parent=Os05t0536900-01
Chr05	irgsp1_rep	CDS	26664637	26664692	.	+	0	Parent=Os05t0536900-01
Chr05	irgsp1_rep	CDS	26664862	26664888	.	+	1	Parent=Os05t0536900-01
Chr05	irgsp1_rep	CDS	26665126	26665225	.	+	1	Parent=Os05t0536900-01
Chr05	irgsp1_rep	CDS	26665341	26665487	.	+	0	Parent=Os05t0536900-01
Chr05	irgsp1_rep	CDS	26665830	26665910	.	+	0	Parent=Os05t0536900-01
Chr05	irgsp1_rep	CDS	26666041	26666186	.	+	0	Parent=Os05t0536900-01
Chr05	irgsp1_rep	CDS	26666299	26666362	.	+	1	Parent=Os05t0536900-01
Chr05	irgsp1_rep	three_prime_UTR	26666363	26666561	.	+	.	Parent=Os05t0536900-01
Chr05	irgsp1_rep	mRNA	26682661	26684165	.	+	.	ID=Os05t0537100-00;Name=Os05t0537100-00;Locus_id=Os05g0537100;CGSNL Gene Symbol=WRKY7;CGSNL Gene Name=WRKY GENE 7;Oryzabase Gene Symbol Synonym(s)=OsWRKY7;Oryzabase Gene Name Synonym(s)=Rice WRKY gene7;Note=WRKY transcription factor 10.;Transcript_evidence=CT837881 (DDBJ%2C Best hit);ORF_evidence=Q20DQ1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6585;TENOR=Os05t0537100-00;KEGG=Os05t0537100-00
Chr05	irgsp1_rep	five_prime_UTR	26682661	26682740	.	+	.	Parent=Os05t0537100-00
Chr05	irgsp1_rep	CDS	26682741	26683042	.	+	0	Parent=Os05t0537100-00
Chr05	irgsp1_rep	CDS	26683151	26683312	.	+	1	Parent=Os05t0537100-00
Chr05	irgsp1_rep	CDS	26683559	26683760	.	+	1	Parent=Os05t0537100-00
Chr05	irgsp1_rep	three_prime_UTR	26683761	26684165	.	+	.	Parent=Os05t0537100-00
Chr05	irgsp1_rep	mRNA	26685979	26690338	.	+	.	ID=Os05t0537200-01;Name=Os05t0537200-01;Locus_id=Os05g0537200;Oryzabase Gene Symbol Synonym(s)=OsSTA158%2C STA158;Note=Similar to Myosin XI (Fragment).;Transcript_evidence=AK121713 (DDBJ%2C Best hit);ORF_evidence=Q5R216 (UniProt);GO=Cellular Component: myosin complex (GO:0016459),Molecular Function: motor activity (GO:0003774),Molecular Function: ATP binding (GO:0005524);InterPro=Myosin head%2C motor domain (IPR001609),Myosin%2C N-terminal%2C SH3-like (IPR004009);NIAS_FLcDNA=J033078K24;Oryzabase=19444;Expression=AK121713;TENOR=Os05t0537200-01;KEGG=Os05t0537200-01
Chr05	irgsp1_rep	five_prime_UTR	26685979	26686497	.	+	.	Parent=Os05t0537200-01
Chr05	irgsp1_rep	CDS	26686498	26686500	.	+	0	Parent=Os05t0537200-01
Chr05	irgsp1_rep	CDS	26687835	26687963	.	+	0	Parent=Os05t0537200-01
Chr05	irgsp1_rep	CDS	26688465	26688608	.	+	0	Parent=Os05t0537200-01
Chr05	irgsp1_rep	CDS	26688726	26688871	.	+	0	Parent=Os05t0537200-01
Chr05	irgsp1_rep	CDS	26688975	26689131	.	+	1	Parent=Os05t0537200-01
Chr05	irgsp1_rep	CDS	26689279	26689337	.	+	0	Parent=Os05t0537200-01
Chr05	irgsp1_rep	CDS	26689577	26689736	.	+	1	Parent=Os05t0537200-01
Chr05	irgsp1_rep	CDS	26689810	26689959	.	+	0	Parent=Os05t0537200-01
Chr05	irgsp1_rep	CDS	26690069	26690205	.	+	0	Parent=Os05t0537200-01
Chr05	irgsp1_rep	CDS	26690308	26690338	.	+	1	Parent=Os05t0537200-01
Chr05	irgsp1_rep	mRNA	26701863	26705017	.	+	.	ID=Os05t0537300-01;Name=Os05t0537300-01;Locus_id=Os05g0537300;Oryzabase Gene Symbol Synonym(s)=OsSTA158%2C STA158;Note=Similar to Unconventional myosin heavy chain.;Transcript_evidence=AK064553 (DDBJ%2C Best hit);ORF_evidence=NP_001104925.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Dilute (IPR002710),Dil domain (IPR018444);NIAS_FLcDNA=002-112-C02;Oryzabase=19444;Expression=AK064553;TENOR=Os05t0537300-01;KEGG=Os05t0537300-01
Chr05	irgsp1_rep	five_prime_UTR	26701863	26701965	.	+	.	Parent=Os05t0537300-01
Chr05	irgsp1_rep	five_prime_UTR	26702091	26702206	.	+	.	Parent=Os05t0537300-01
Chr05	irgsp1_rep	five_prime_UTR	26702285	26702386	.	+	.	Parent=Os05t0537300-01
Chr05	irgsp1_rep	five_prime_UTR	26702476	26702556	.	+	.	Parent=Os05t0537300-01
Chr05	irgsp1_rep	five_prime_UTR	26702639	26702824	.	+	.	Parent=Os05t0537300-01
Chr05	irgsp1_rep	five_prime_UTR	26702931	26702974	.	+	.	Parent=Os05t0537300-01
Chr05	irgsp1_rep	CDS	26702975	26703337	.	+	0	Parent=Os05t0537300-01
Chr05	irgsp1_rep	CDS	26703427	26703567	.	+	0	Parent=Os05t0537300-01
Chr05	irgsp1_rep	CDS	26703659	26703729	.	+	0	Parent=Os05t0537300-01
Chr05	irgsp1_rep	CDS	26703804	26703903	.	+	1	Parent=Os05t0537300-01
Chr05	irgsp1_rep	CDS	26703976	26704032	.	+	0	Parent=Os05t0537300-01
Chr05	irgsp1_rep	CDS	26704140	26704196	.	+	0	Parent=Os05t0537300-01
Chr05	irgsp1_rep	CDS	26704285	26704365	.	+	0	Parent=Os05t0537300-01
Chr05	irgsp1_rep	CDS	26704465	26704547	.	+	0	Parent=Os05t0537300-01
Chr05	irgsp1_rep	CDS	26704632	26704758	.	+	1	Parent=Os05t0537300-01
Chr05	irgsp1_rep	three_prime_UTR	26704759	26705017	.	+	.	Parent=Os05t0537300-01
Chr05	irgsp1_rep	mRNA	26705164	26707820	.	-	.	ID=Os05t0537400-01;Name=Os05t0537400-01;Locus_id=Os05g0537400;RAP-DB Gene Symbol Synonym(s)=OsPP2C50;RAP-DB Gene Name Synonym(s)=protein phosphatase 2C50;CGSNL Gene Symbol=PP2C50;CGSNL Gene Name=PROTEIN PHOSPHATASE 2C50;Oryzabase Gene Symbol Synonym(s)=OsPP2C50%2C OsPP78%2C OsABIL3%2C ABIL3;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C50%2C protein phosphatase 2C 50%2C protein phosphatase 78%2C OsABI-LIKE3%2C ABI-LIKE3%2C ABI-LIKE 3;Note=Clade A type 2C protein phosphatase%2C Negative regulation of ABA signaling%2C Stomatal closure;Transcript_evidence=Inferred from literature;ORF_evidence=Q6L5H6;GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: cation binding (GO:0043169);InterPro=PPM-type phosphatase domain superfamily (IPR036457),PPM-type phosphatase domain (IPR001932),PPM-type phosphatase%2C divalent cation binding (IPR000222);Manual Curation=May 29%2C 2019;Literature_PMID=31134357;Oryzabase=17923;Subcellular location=cytosol (GO:0005829)
Chr05	irgsp1_rep	CDS	26707449	26707820	.	-	0	Parent=Os05t0537400-01
Chr05	irgsp1_rep	CDS	26706996	26707340	.	-	0	Parent=Os05t0537400-01
Chr05	irgsp1_rep	CDS	26706800	26706905	.	-	0	Parent=Os05t0537400-01
Chr05	irgsp1_rep	CDS	26705468	26705808	.	-	2	Parent=Os05t0537400-01
Chr05	irgsp1_rep	three_prime_UTR	26705164	26705467	.	-	.	Parent=Os05t0537400-01
Chr05	irgsp1_rep	mRNA	26706568	26708198	.	-	.	ID=Os05t0537400-02;Name=Os05t0537400-02;Locus_id=Os05g0537400;RAP-DB Gene Symbol Synonym(s)=OsPP2C50;RAP-DB Gene Name Synonym(s)=protein phosphatase 2C50;CGSNL Gene Symbol=PP2C50;CGSNL Gene Name=PROTEIN PHOSPHATASE 2C50;Oryzabase Gene Symbol Synonym(s)=OsPP2C50%2C OsPP78%2C OsABIL3%2C ABIL3;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C50%2C protein phosphatase 2C 50%2C protein phosphatase 78%2C OsABI-LIKE3%2C ABI-LIKE3%2C ABI-LIKE 3;Note=Splicing variant of protein phosphatase 2C50;Transcript_evidence=CT841945 (Oryza rufipogon);ORF_evidence=Q6L5H6-2;GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: cation binding (GO:0043169);InterPro=PPM-type phosphatase domain superfamily (IPR036457),PPM-type phosphatase domain (IPR001932),PPM-type phosphatase%2C divalent cation binding (IPR000222);Manual Curation=May 29%2C 2019;Literature_PMID=31134357;Oryzabase=17923;TENOR=Os05t0537400-00;KEGG=Os05t0537400-00 (EC:3.1.3.16)
Chr05	irgsp1_rep	five_prime_UTR	26707821	26708198	.	-	.	Parent=Os05t0537400-02
Chr05	irgsp1_rep	CDS	26707449	26707820	.	-	0	Parent=Os05t0537400-02
Chr05	irgsp1_rep	CDS	26706996	26707340	.	-	0	Parent=Os05t0537400-02
Chr05	irgsp1_rep	CDS	26706732	26706905	.	-	0	Parent=Os05t0537400-02
Chr05	irgsp1_rep	three_prime_UTR	26706568	26706731	.	-	.	Parent=Os05t0537400-02
Chr05	irgsp1_rep	mRNA	26714509	26716025	.	+	.	ID=Os05t0537700-01;Name=Os05t0537700-01;Locus_id=Os05g0537700;Oryzabase Gene Symbol Synonym(s)=Os_F0659;Note=Protein of unknown function DUF295 family protein.;Transcript_evidence=AK106906 (DDBJ%2C Best hit);ORF_evidence=A2Y6Y2 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174);NIAS_FLcDNA=002-119-A01;Oryzabase=17449;Expression=AK106906;TENOR=Os05t0537700-01;KEGG=Os05t0537700-01
Chr05	irgsp1_rep	five_prime_UTR	26714509	26714584	.	+	.	Parent=Os05t0537700-01
Chr05	irgsp1_rep	CDS	26714585	26715727	.	+	0	Parent=Os05t0537700-01
Chr05	irgsp1_rep	three_prime_UTR	26715728	26716025	.	+	.	Parent=Os05t0537700-01
Chr05	irgsp1_rep	mRNA	26731894	26734986	.	-	.	ID=Os05t0538250-00;Name=Os05t0538250-00;Locus_id=Os05g0538250;Oryzabase Gene Symbol Synonym(s)=Os_F0708;Note=Similar to F-box protein.;Transcript_evidence=ab initio prediction;ORF_evidence=C6L7Y7 (UniProt);Oryzabase=17498;TENOR=Os05t0538250-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	26734962	26734986	.	-	0	Parent=Os05t0538250-00
Chr05	irgsp1_rep	CDS	26734688	26734794	.	-	2	Parent=Os05t0538250-00
Chr05	irgsp1_rep	CDS	26733439	26734263	.	-	0	Parent=Os05t0538250-00
Chr05	irgsp1_rep	CDS	26732993	26733160	.	-	0	Parent=Os05t0538250-00
Chr05	irgsp1_rep	CDS	26732524	26732902	.	-	0	Parent=Os05t0538250-00
Chr05	irgsp1_rep	CDS	26731894	26731973	.	-	2	Parent=Os05t0538250-00
Chr05	irgsp1_rep	mRNA	26738233	26740873	.	-	.	ID=Os05t0538500-00;Name=Os05t0538500-00;Locus_id=Os05g0538500;Oryzabase Gene Symbol Synonym(s)=PR5;Oryzabase Gene Name Synonym(s)=pathogenesis-related gene 5;Note=Similar to Thaumatin-like protein%3B 23251-22305.;Transcript_evidence=EU966909 (DDBJ);ORF_evidence=Q9C9Q0 (UniProt);InterPro=Thaumatin%2C pathogenesis-related (IPR001938);Oryzabase=23032;TENOR=Os05t0538500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	26740374	26740873	.	-	0	Parent=Os05t0538500-00
Chr05	irgsp1_rep	CDS	26738233	26739013	.	-	1	Parent=Os05t0538500-00
Chr05	irgsp1_rep	mRNA	26738529	26740837	.	+	.	ID=Os05t0538600-00;Name=Os05t0538600-00;Locus_id=Os05g0538600;Note=Hypothetical protein.;Transcript_evidence=EU967040 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0538600-00
Chr05	irgsp1_rep	five_prime_UTR	26738529	26738613	.	+	.	Parent=Os05t0538600-00
Chr05	irgsp1_rep	CDS	26738614	26738645	.	+	0	Parent=Os05t0538600-00
Chr05	irgsp1_rep	CDS	26740396	26740684	.	+	1	Parent=Os05t0538600-00
Chr05	irgsp1_rep	three_prime_UTR	26740685	26740837	.	+	.	Parent=Os05t0538600-00
Chr05	irgsp1_rep	mRNA	26750213	26750693	.	-	.	ID=Os05t0538700-00;Name=Os05t0538700-00;Locus_id=Os05g0538700;Note=Hypothetical protein.;Transcript_evidence=BT083870 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0538700-00
Chr05	irgsp1_rep	five_prime_UTR	26750504	26750693	.	-	.	Parent=Os05t0538700-00
Chr05	irgsp1_rep	CDS	26750213	26750503	.	-	0	Parent=Os05t0538700-00
Chr05	irgsp1_rep	mRNA	26761836	26764812	.	-	.	ID=Os05t0538900-01;Name=Os05t0538900-01;Locus_id=Os05g0538900;Note=Similar to oxidoreductase.;Transcript_evidence=AK241898 (DDBJ%2C Best hit);ORF_evidence=NP_001149769.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020),Molecular Function: NADH dehydrogenase (ubiquinone) activity (GO:0008137),Molecular Function: electron carrier activity (GO:0009055);InterPro=NADH:ubiquinone oxidoreductase%2C 17.2kDa subunit (IPR007763);NIAS_FLcDNA=J075019D24;TENOR=Os05t0538900-01;KEGG=Os05t0538900-01
Chr05	irgsp1_rep	five_prime_UTR	26764577	26764812	.	-	.	Parent=Os05t0538900-01
Chr05	irgsp1_rep	CDS	26764447	26764576	.	-	0	Parent=Os05t0538900-01
Chr05	irgsp1_rep	CDS	26764266	26764325	.	-	2	Parent=Os05t0538900-01
Chr05	irgsp1_rep	CDS	26764040	26764092	.	-	2	Parent=Os05t0538900-01
Chr05	irgsp1_rep	CDS	26763848	26763899	.	-	0	Parent=Os05t0538900-01
Chr05	irgsp1_rep	CDS	26763117	26763177	.	-	2	Parent=Os05t0538900-01
Chr05	irgsp1_rep	CDS	26762652	26762661	.	-	1	Parent=Os05t0538900-01
Chr05	irgsp1_rep	three_prime_UTR	26762590	26762651	.	-	.	Parent=Os05t0538900-01
Chr05	irgsp1_rep	three_prime_UTR	26762437	26762503	.	-	.	Parent=Os05t0538900-01
Chr05	irgsp1_rep	three_prime_UTR	26761836	26762070	.	-	.	Parent=Os05t0538900-01
Chr05	irgsp1_rep	mRNA	26776769	26778942	.	+	.	ID=Os05t0539150-01;Name=Os05t0539150-01;Locus_id=Os05g0539150;Note=Protein of unknown function DUF295 domain containing protein.;Transcript_evidence=AK287571 (DDBJ%2C Best hit);ORF_evidence=GeneMark;InterPro=Protein of unknown function DUF295 (IPR005174);NIAS_FLcDNA=J065032H22;TENOR=Os05t0539150-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	26776769	26778142	.	+	0	Parent=Os05t0539150-01
Chr05	irgsp1_rep	three_prime_UTR	26778143	26778942	.	+	.	Parent=Os05t0539150-01
Chr05	irgsp1_rep	mRNA	26792022	26793638	.	+	.	ID=Os05t0539300-01;Name=Os05t0539300-01;Locus_id=Os05g0539300;Note=Protein of unknown function DUF295 family protein.;Transcript_evidence=AK287937 (DDBJ%2C Best hit);ORF_evidence=GeneMark;InterPro=Protein of unknown function DUF295 (IPR005174);NIAS_FLcDNA=J075005P17;TENOR=Os05t0539300-01;KEGG=Os05t0539300-01
Chr05	irgsp1_rep	five_prime_UTR	26792022	26792132	.	+	.	Parent=Os05t0539300-01
Chr05	irgsp1_rep	CDS	26792133	26793398	.	+	0	Parent=Os05t0539300-01
Chr05	irgsp1_rep	three_prime_UTR	26793399	26793638	.	+	.	Parent=Os05t0539300-01
Chr05	irgsp1_rep	mRNA	26794411	26801239	.	-	.	ID=Os05t0539400-01;Name=Os05t0539400-01;Locus_id=Os05g0539400;CGSNL Gene Symbol=BGAL9;CGSNL Gene Name=BETA-GALACTOSIDASE 9;Oryzabase Gene Symbol Synonym(s)=OsBgal9%2C OsBGal9;Oryzabase Gene Name Synonym(s)=Beta-galactosidase 8%2C Lactase 8;Note=Glycoside hydrolase%2C family 35 protein.;Transcript_evidence=AK068572 (DDBJ%2C Best hit);ORF_evidence=B8AW61 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 35 (IPR001944),Galactose-binding domain-like (IPR008979),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 35%2C conserved site (IPR019801);NIAS_FLcDNA=J013156K22;Oryzabase=8297;Expression=AK068572;TENOR=Os05t0539400-01;KEGG=Os05t0539400-01 (EC:3.2.1.23)
Chr05	irgsp1_rep	five_prime_UTR	26801082	26801239	.	-	.	Parent=Os05t0539400-01
Chr05	irgsp1_rep	CDS	26801007	26801081	.	-	0	Parent=Os05t0539400-01
Chr05	irgsp1_rep	CDS	26800765	26800878	.	-	0	Parent=Os05t0539400-01
Chr05	irgsp1_rep	CDS	26800112	26800307	.	-	0	Parent=Os05t0539400-01
Chr05	irgsp1_rep	CDS	26799530	26799618	.	-	2	Parent=Os05t0539400-01
Chr05	irgsp1_rep	CDS	26799342	26799422	.	-	0	Parent=Os05t0539400-01
Chr05	irgsp1_rep	CDS	26799121	26799215	.	-	0	Parent=Os05t0539400-01
Chr05	irgsp1_rep	CDS	26798543	26798613	.	-	1	Parent=Os05t0539400-01
Chr05	irgsp1_rep	CDS	26798157	26798247	.	-	2	Parent=Os05t0539400-01
Chr05	irgsp1_rep	CDS	26797945	26798062	.	-	1	Parent=Os05t0539400-01
Chr05	irgsp1_rep	CDS	26797769	26797864	.	-	0	Parent=Os05t0539400-01
Chr05	irgsp1_rep	CDS	26797629	26797677	.	-	0	Parent=Os05t0539400-01
Chr05	irgsp1_rep	CDS	26797347	26797537	.	-	2	Parent=Os05t0539400-01
Chr05	irgsp1_rep	CDS	26797182	26797253	.	-	0	Parent=Os05t0539400-01
Chr05	irgsp1_rep	CDS	26796955	26797101	.	-	0	Parent=Os05t0539400-01
Chr05	irgsp1_rep	CDS	26796255	26796305	.	-	0	Parent=Os05t0539400-01
Chr05	irgsp1_rep	CDS	26795972	26796164	.	-	0	Parent=Os05t0539400-01
Chr05	irgsp1_rep	CDS	26795242	26795387	.	-	2	Parent=Os05t0539400-01
Chr05	irgsp1_rep	CDS	26795081	26795146	.	-	0	Parent=Os05t0539400-01
Chr05	irgsp1_rep	CDS	26794690	26794770	.	-	0	Parent=Os05t0539400-01
Chr05	irgsp1_rep	three_prime_UTR	26794411	26794689	.	-	.	Parent=Os05t0539400-01
Chr05	irgsp1_rep	mRNA	26801678	26805058	.	+	.	ID=Os05t0539500-01;Name=Os05t0539500-01;Locus_id=Os05g0539500;Oryzabase Gene Symbol Synonym(s)=OsPOP10%2C POP10;Oryzabase Gene Name Synonym(s)=Prolyl Oligopeptidase 10%2C PROLYL OLIGOPEPTIDASE 10;Note=Esterase/lipase/thioesterase domain containing protein.;Transcript_evidence=AK103672 (DDBJ%2C Best hit);ORF_evidence=NP_001149447.1 (RefSeq);NIAS_FLcDNA=J033136A05;Oryzabase=20018;Expression=AK103672;TENOR=Os05t0539500-01;KEGG=Os05t0539500-01
Chr05	irgsp1_rep	CDS	26801678	26801735	.	+	0	Parent=Os05t0539500-01
Chr05	irgsp1_rep	CDS	26802552	26802668	.	+	2	Parent=Os05t0539500-01
Chr05	irgsp1_rep	CDS	26803280	26803364	.	+	2	Parent=Os05t0539500-01
Chr05	irgsp1_rep	CDS	26803603	26803724	.	+	1	Parent=Os05t0539500-01
Chr05	irgsp1_rep	CDS	26804237	26804401	.	+	2	Parent=Os05t0539500-01
Chr05	irgsp1_rep	CDS	26804606	26804699	.	+	2	Parent=Os05t0539500-01
Chr05	irgsp1_rep	CDS	26804791	26804998	.	+	1	Parent=Os05t0539500-01
Chr05	irgsp1_rep	three_prime_UTR	26804999	26805058	.	+	.	Parent=Os05t0539500-01
Chr05	irgsp1_rep	mRNA	26805817	26809069	.	+	.	ID=Os05t0539600-01;Name=Os05t0539600-01;Locus_id=Os05g0539600;Oryzabase Gene Symbol Synonym(s)=PM-ANT;Oryzabase Gene Name Synonym(s)=plasma membrane-localized adenine nucleotide transporter;Note=Mitochondrial substrate carrier family protein.;Transcript_evidence=AK066441 (DDBJ%2C Best hit);ORF_evidence=XP_002866150.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial inner membrane (GO:0005743),Molecular Function: transporter activity (GO:0005215),Molecular Function: binding (GO:0005488);InterPro=Mitochondrial carrier protein (IPR002067),Adenine nucleotide translocator 1 (IPR002113),Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J013067P17;Oryzabase=21919;Expression=AK066441;TENOR=Os05t0539600-01;KEGG=Os05t0539600-01
Chr05	irgsp1_rep	five_prime_UTR	26805817	26805857	.	+	.	Parent=Os05t0539600-01
Chr05	irgsp1_rep	CDS	26805858	26806373	.	+	0	Parent=Os05t0539600-01
Chr05	irgsp1_rep	three_prime_UTR	26806374	26809069	.	+	.	Parent=Os05t0539600-01
Chr05	irgsp1_rep	mRNA	26809206	26812469	.	-	.	ID=Os05t0539700-01;Name=Os05t0539700-01;Locus_id=Os05g0539700;Oryzabase Gene Symbol Synonym(s)=Orysa%3BNAP1%3B2%2C OsNAP1_L2;Oryzabase Gene Name Synonym(s)=nucleosome assembly protein 1-like protein 2%2C Nucleosome assembly protein 1%3B2%2C NAP1-like protein 2;Note=Similar to Nucleosome assembly protein 1.;Transcript_evidence=AK071120 (DDBJ%2C Best hit),AK105671 (DDBJ%2C Best hit);ORF_evidence=Q70Z20 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleus (GO:0005634);InterPro=Nucleosome assembly protein (NAP) (IPR002164);NIAS_FLcDNA=J023081N13,001-201-A05;Oryzabase=14084;Expression=AK071120;TENOR=Os05t0539700-01;KEGG=Os05t0539700-01
Chr05	irgsp1_rep	five_prime_UTR	26812321	26812469	.	-	.	Parent=Os05t0539700-01
Chr05	irgsp1_rep	CDS	26812257	26812320	.	-	0	Parent=Os05t0539700-01
Chr05	irgsp1_rep	CDS	26812102	26812145	.	-	2	Parent=Os05t0539700-01
Chr05	irgsp1_rep	CDS	26811886	26811981	.	-	0	Parent=Os05t0539700-01
Chr05	irgsp1_rep	CDS	26811132	26811224	.	-	0	Parent=Os05t0539700-01
Chr05	irgsp1_rep	CDS	26810775	26810856	.	-	0	Parent=Os05t0539700-01
Chr05	irgsp1_rep	CDS	26810527	26810591	.	-	2	Parent=Os05t0539700-01
Chr05	irgsp1_rep	CDS	26810258	26810442	.	-	0	Parent=Os05t0539700-01
Chr05	irgsp1_rep	CDS	26809994	26810171	.	-	1	Parent=Os05t0539700-01
Chr05	irgsp1_rep	CDS	26809867	26809910	.	-	0	Parent=Os05t0539700-01
Chr05	irgsp1_rep	CDS	26809604	26809778	.	-	1	Parent=Os05t0539700-01
Chr05	irgsp1_rep	CDS	26809450	26809518	.	-	0	Parent=Os05t0539700-01
Chr05	irgsp1_rep	three_prime_UTR	26809206	26809449	.	-	.	Parent=Os05t0539700-01
Chr05	irgsp1_rep	mRNA	26809611	26811228	.	+	.	ID=Os05t0539750-00;Name=Os05t0539750-00;Locus_id=Os05g0539750;Note=Non-protein coding transcript.;Transcript_evidence=BT085039 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0539750-00
Chr05	irgsp1_rep	exon	26809611	26809772	.	+	.	Parent=Os05t0539750-00
Chr05	irgsp1_rep	exon	26809860	26809892	.	+	.	Parent=Os05t0539750-00
Chr05	irgsp1_rep	exon	26809978	26810168	.	+	.	Parent=Os05t0539750-00
Chr05	irgsp1_rep	exon	26810254	26810576	.	+	.	Parent=Os05t0539750-00
Chr05	irgsp1_rep	exon	26811110	26811228	.	+	.	Parent=Os05t0539750-00
Chr05	irgsp1_rep	mRNA	26815636	26818736	.	-	.	ID=Os05t0539800-01;Name=Os05t0539800-01;Locus_id=Os05g0539800;Oryzabase Gene Symbol Synonym(s)=OsRTH2%2C RTH2;Oryzabase Gene Name Synonym(s)=Reversion-To-ethylene Sensitivity1 homologue 2;Note=Protein of unknown function DUF778 family protein.;Transcript_evidence=AK061570 (DDBJ%2C Best hit);ORF_evidence=Q1HTV4 (UniProt);InterPro=Protein of unknown function DUF778 (IPR008496);NIAS_FLcDNA=006-311-F09;Oryzabase=10412;Expression=AK061570;TENOR=Os05t0539800-01;KEGG=Os05t0539800-01
Chr05	irgsp1_rep	five_prime_UTR	26818640	26818736	.	-	.	Parent=Os05t0539800-01
Chr05	irgsp1_rep	five_prime_UTR	26817140	26817228	.	-	.	Parent=Os05t0539800-01
Chr05	irgsp1_rep	CDS	26816858	26817139	.	-	0	Parent=Os05t0539800-01
Chr05	irgsp1_rep	CDS	26815839	26816258	.	-	0	Parent=Os05t0539800-01
Chr05	irgsp1_rep	three_prime_UTR	26815636	26815838	.	-	.	Parent=Os05t0539800-01
Chr05	irgsp1_rep	mRNA	26815665	26818731	.	-	.	ID=Os05t0539800-02;Name=Os05t0539800-02;Locus_id=Os05g0539800;Oryzabase Gene Symbol Synonym(s)=OsRTH2%2C RTH2;Oryzabase Gene Name Synonym(s)=Reversion-To-ethylene Sensitivity1 homologue 2;Note=Protein of unknown function DUF778 family protein.;Transcript_evidence=AK102316 (DDBJ%2C Best hit);ORF_evidence=Q1HTV4 (UniProt);InterPro=Protein of unknown function DUF778 (IPR008496);NIAS_FLcDNA=J033090F11;Oryzabase=10412;Expression=AK102316;TENOR=Os05t0539800-02;KEGG=Os05t0539800-02
Chr05	irgsp1_rep	five_prime_UTR	26818640	26818731	.	-	.	Parent=Os05t0539800-02
Chr05	irgsp1_rep	five_prime_UTR	26817140	26817241	.	-	.	Parent=Os05t0539800-02
Chr05	irgsp1_rep	CDS	26816858	26817139	.	-	0	Parent=Os05t0539800-02
Chr05	irgsp1_rep	CDS	26815839	26816258	.	-	0	Parent=Os05t0539800-02
Chr05	irgsp1_rep	three_prime_UTR	26815665	26815838	.	-	.	Parent=Os05t0539800-02
Chr05	irgsp1_rep	mRNA	26820731	26822297	.	+	.	ID=Os05t0539900-01;Name=Os05t0539900-01;Locus_id=Os05g0539900;Note=Protein of unknown function DUF1230 family protein.;Transcript_evidence=AK073867 (DDBJ%2C Best hit);ORF_evidence=XP_002440152.1 (RefSeq);InterPro=Uncharacterised protein family Ycf36 (IPR009631);NIAS_FLcDNA=J033075I05;Expression=AK073867;TENOR=Os05t0539900-01;KEGG=Os05t0539900-01
Chr05	irgsp1_rep	five_prime_UTR	26820731	26820849	.	+	.	Parent=Os05t0539900-01
Chr05	irgsp1_rep	CDS	26820850	26821333	.	+	0	Parent=Os05t0539900-01
Chr05	irgsp1_rep	CDS	26821419	26821465	.	+	2	Parent=Os05t0539900-01
Chr05	irgsp1_rep	three_prime_UTR	26821466	26822297	.	+	.	Parent=Os05t0539900-01
Chr05	irgsp1_rep	mRNA	26824644	26828499	.	+	.	ID=Os05t0540000-01;Name=Os05t0540000-01;Locus_id=Os05g0540000;CGSNL Gene Symbol=GINT1;CGSNL Gene Name=GLUCOSAMINE INOSITOLPHOSPHORYLCERAMIDE TRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=OsGINT1;Oryzabase Gene Name Synonym(s)=GLUCOSAMINE INOSITOLPHOSPHORYLCERAMIDE TRANSFERASE1;Note=EXTL2%2C alpha-1%2C4-N-acetylhexosaminyltransferase domain containing protein.;Transcript_evidence=AK100416 (DDBJ%2C Best hit);ORF_evidence=XP_002871098.1 (RefSeq);GO=Cellular Component: intrinsic to endoplasmic reticulum membrane (GO:0031227),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=EXTL2%2C alpha-1%2C4-N-acetylhexosaminyltransferase (IPR015338),Glycosyl hydrolase family 43%2C five-bladed beta-propellor domain (IPR023296);NIAS_FLcDNA=J023087M19;Oryzabase=22422;Expression=AK100416;TENOR=Os05t0540000-01;KEGG=Os05t0540000-01
Chr05	irgsp1_rep	five_prime_UTR	26824644	26824945	.	+	.	Parent=Os05t0540000-01
Chr05	irgsp1_rep	CDS	26824946	26825215	.	+	0	Parent=Os05t0540000-01
Chr05	irgsp1_rep	CDS	26825308	26825430	.	+	0	Parent=Os05t0540000-01
Chr05	irgsp1_rep	CDS	26826359	26826526	.	+	0	Parent=Os05t0540000-01
Chr05	irgsp1_rep	CDS	26826614	26828287	.	+	0	Parent=Os05t0540000-01
Chr05	irgsp1_rep	three_prime_UTR	26828288	26828499	.	+	.	Parent=Os05t0540000-01
Chr05	irgsp1_rep	mRNA	26830287	26834200	.	-	.	ID=Os05t0540100-01;Name=Os05t0540100-01;Locus_id=Os05g0540100;CGSNL Gene Symbol=FEN1;CGSNL Gene Name=FLAP ENDONUCLEASE 1;Oryzabase Gene Symbol Synonym(s)=OsFEN1%2C OsFEN-1a%2C FEN-1;Oryzabase Gene Name Synonym(s)=flap endonuclease-1%2C Flap endonuclease-1a;Note=Flap endonuclease-1a (EC 3.-.-.-) (OsFEN-1a).;Transcript_evidence=AK060623 (DDBJ%2C Best hit),AK103819 (DDBJ%2C Best hit);ORF_evidence=Q9SXQ6 (UniProt);GO=Biological Process: DNA repair (GO:0006281),Molecular Function: DNA binding (GO:0003677),Molecular Function: catalytic activity (GO:0003824),Molecular Function: nuclease activity (GO:0004518),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=DNA repair protein (XPGC)/yeast Rad (IPR006084),XPG N-terminal (IPR006085),XPG/RAD2 endonuclease (IPR006086),Helix-hairpin-helix motif%2C class 2 (IPR008918),XPG conserved site (IPR019974),5&apos%3B-3&apos%3B exonuclease%2C C-terminal domain (IPR020045);NIAS_FLcDNA=001-026-F07,J033147G19;Oryzabase=6145;Expression=AK060623;TENOR=Os05t0540100-01;KEGG=Os05t0540100-01 (EC:3.-.-.-)
Chr05	irgsp1_rep	five_prime_UTR	26834118	26834200	.	-	.	Parent=Os05t0540100-01
Chr05	irgsp1_rep	CDS	26834106	26834117	.	-	0	Parent=Os05t0540100-01
Chr05	irgsp1_rep	CDS	26833854	26833970	.	-	0	Parent=Os05t0540100-01
Chr05	irgsp1_rep	CDS	26833366	26833424	.	-	0	Parent=Os05t0540100-01
Chr05	irgsp1_rep	CDS	26833225	26833284	.	-	1	Parent=Os05t0540100-01
Chr05	irgsp1_rep	CDS	26833095	26833149	.	-	1	Parent=Os05t0540100-01
Chr05	irgsp1_rep	CDS	26832938	26832985	.	-	0	Parent=Os05t0540100-01
Chr05	irgsp1_rep	CDS	26832784	26832831	.	-	0	Parent=Os05t0540100-01
Chr05	irgsp1_rep	CDS	26832525	26832590	.	-	0	Parent=Os05t0540100-01
Chr05	irgsp1_rep	CDS	26832310	26832360	.	-	0	Parent=Os05t0540100-01
Chr05	irgsp1_rep	CDS	26832110	26832229	.	-	0	Parent=Os05t0540100-01
Chr05	irgsp1_rep	CDS	26831954	26832038	.	-	0	Parent=Os05t0540100-01
Chr05	irgsp1_rep	CDS	26831759	26831840	.	-	2	Parent=Os05t0540100-01
Chr05	irgsp1_rep	CDS	26831422	26831530	.	-	1	Parent=Os05t0540100-01
Chr05	irgsp1_rep	CDS	26831286	26831344	.	-	0	Parent=Os05t0540100-01
Chr05	irgsp1_rep	CDS	26831162	26831206	.	-	1	Parent=Os05t0540100-01
Chr05	irgsp1_rep	CDS	26831003	26831057	.	-	1	Parent=Os05t0540100-01
Chr05	irgsp1_rep	CDS	26830436	26830507	.	-	0	Parent=Os05t0540100-01
Chr05	irgsp1_rep	three_prime_UTR	26830287	26830435	.	-	.	Parent=Os05t0540100-01
Chr05	irgsp1_rep	mRNA	26828555	26832362	.	-	.	ID=Os05t0540100-03;Name=Os05t0540100-03;Locus_id=Os05g0540100;CGSNL Gene Symbol=FEN1;CGSNL Gene Name=FLAP ENDONUCLEASE 1;Oryzabase Gene Symbol Synonym(s)=OsFEN1%2C OsFEN-1a%2C FEN-1;Oryzabase Gene Name Synonym(s)=flap endonuclease-1%2C Flap endonuclease-1a;Note=Similar to Flap endonuclease 1a.;Transcript_evidence=AK119438 (DDBJ%2C Best hit);ORF_evidence=Q9SXQ6 (UniProt);GO=Biological Process: DNA repair (GO:0006281),Molecular Function: DNA binding (GO:0003677),Molecular Function: catalytic activity (GO:0003824),Molecular Function: nuclease activity (GO:0004518);InterPro=DNA repair protein (XPGC)/yeast Rad (IPR006084),XPG/RAD2 endonuclease (IPR006086),Helix-hairpin-helix motif%2C class 2 (IPR008918),5'-3' exonuclease%2C C-terminal domain (IPR020045);NIAS_FLcDNA=001-133-B04;Oryzabase=6145;Expression=AK119438;TENOR=Os05t0540100-03;KEGG=Os05t0540100-03 (EC:3.-.-.-)
Chr05	irgsp1_rep	five_prime_UTR	26832361	26832362	.	-	.	Parent=Os05t0540100-03
Chr05	irgsp1_rep	CDS	26832310	26832360	.	-	0	Parent=Os05t0540100-03
Chr05	irgsp1_rep	CDS	26832110	26832229	.	-	0	Parent=Os05t0540100-03
Chr05	irgsp1_rep	CDS	26831954	26832038	.	-	0	Parent=Os05t0540100-03
Chr05	irgsp1_rep	CDS	26831759	26831840	.	-	2	Parent=Os05t0540100-03
Chr05	irgsp1_rep	CDS	26831422	26831530	.	-	1	Parent=Os05t0540100-03
Chr05	irgsp1_rep	CDS	26831286	26831344	.	-	0	Parent=Os05t0540100-03
Chr05	irgsp1_rep	CDS	26831162	26831206	.	-	1	Parent=Os05t0540100-03
Chr05	irgsp1_rep	CDS	26831003	26831057	.	-	1	Parent=Os05t0540100-03
Chr05	irgsp1_rep	CDS	26830436	26830507	.	-	0	Parent=Os05t0540100-03
Chr05	irgsp1_rep	three_prime_UTR	26828555	26830435	.	-	.	Parent=Os05t0540100-03
Chr05	irgsp1_rep	mRNA	26834414	26835506	.	+	.	ID=Os05t0540200-01;Name=Os05t0540200-01;Locus_id=Os05g0540200;Note=Similar to EMB2752.;Transcript_evidence=AK062486 (DDBJ%2C Best hit);ORF_evidence=NP_001150526.1 (RefSeq);NIAS_FLcDNA=001-103-G10;Expression=AK062486;TENOR=Os05t0540200-01;KEGG=Os05t0540200-01
Chr05	irgsp1_rep	five_prime_UTR	26834414	26834509	.	+	.	Parent=Os05t0540200-01
Chr05	irgsp1_rep	CDS	26834510	26834692	.	+	0	Parent=Os05t0540200-01
Chr05	irgsp1_rep	CDS	26835175	26835309	.	+	0	Parent=Os05t0540200-01
Chr05	irgsp1_rep	three_prime_UTR	26835310	26835506	.	+	.	Parent=Os05t0540200-01
Chr05	irgsp1_rep	mRNA	26835675	26840306	.	-	.	ID=Os05t0540300-01;Name=Os05t0540300-01;Locus_id=Os05g0540300;Oryzabase Gene Name Synonym(s)=58K antigen;Note=Similar to Chaperonin CPN60-2%2C mitochondrial precursor (HSP60-2).;Transcript_evidence=AK070127 (DDBJ%2C Best hit);ORF_evidence=NP_566466.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Biological Process: protein refolding (GO:0042026),Biological Process: cellular protein metabolic process (GO:0044267),Cellular Component: cytoplasm (GO:0005737),Molecular Function: ATP binding (GO:0005524);InterPro=Chaperonin Cpn60 (IPR001844),Chaperonin Cpn60/TCP-1 (IPR002423),Chaperonin Cpn60%2C conserved site (IPR018370);NIAS_FLcDNA=J023045O03;Oryzabase=16682;Expression=AK070127;TENOR=Os05t0540300-01;KEGG=Os05t0540300-01
Chr05	irgsp1_rep	five_prime_UTR	26840249	26840306	.	-	.	Parent=Os05t0540300-01
Chr05	irgsp1_rep	CDS	26840183	26840248	.	-	0	Parent=Os05t0540300-01
Chr05	irgsp1_rep	CDS	26839941	26840087	.	-	0	Parent=Os05t0540300-01
Chr05	irgsp1_rep	CDS	26839637	26839796	.	-	0	Parent=Os05t0540300-01
Chr05	irgsp1_rep	CDS	26839012	26839187	.	-	2	Parent=Os05t0540300-01
Chr05	irgsp1_rep	CDS	26838689	26838784	.	-	0	Parent=Os05t0540300-01
Chr05	irgsp1_rep	CDS	26838480	26838584	.	-	0	Parent=Os05t0540300-01
Chr05	irgsp1_rep	CDS	26837982	26838068	.	-	0	Parent=Os05t0540300-01
Chr05	irgsp1_rep	CDS	26837806	26837895	.	-	0	Parent=Os05t0540300-01
Chr05	irgsp1_rep	CDS	26837556	26837636	.	-	0	Parent=Os05t0540300-01
Chr05	irgsp1_rep	CDS	26837393	26837461	.	-	0	Parent=Os05t0540300-01
Chr05	irgsp1_rep	CDS	26837254	26837331	.	-	0	Parent=Os05t0540300-01
Chr05	irgsp1_rep	CDS	26837046	26837141	.	-	0	Parent=Os05t0540300-01
Chr05	irgsp1_rep	CDS	26836859	26836958	.	-	0	Parent=Os05t0540300-01
Chr05	irgsp1_rep	CDS	26836634	26836737	.	-	2	Parent=Os05t0540300-01
Chr05	irgsp1_rep	CDS	26836446	26836551	.	-	0	Parent=Os05t0540300-01
Chr05	irgsp1_rep	CDS	26836202	26836280	.	-	2	Parent=Os05t0540300-01
Chr05	irgsp1_rep	CDS	26836008	26836113	.	-	1	Parent=Os05t0540300-01
Chr05	irgsp1_rep	three_prime_UTR	26835675	26836007	.	-	.	Parent=Os05t0540300-01
Chr05	irgsp1_rep	mRNA	26839007	26839798	.	+	.	ID=Os05t0540350-00;Name=Os05t0540350-00;Locus_id=Os05g0540350;Note=Non-protein coding transcript.;Transcript_evidence=BT087018 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0540350-00
Chr05	irgsp1_rep	exon	26839007	26839180	.	+	.	Parent=Os05t0540350-00
Chr05	irgsp1_rep	exon	26839625	26839798	.	+	.	Parent=Os05t0540350-00
Chr05	irgsp1_rep	mRNA	26846176	26847985	.	-	.	ID=Os05t0540600-01;Name=Os05t0540600-01;Locus_id=Os05g0540600;Oryzabase Gene Symbol Synonym(s)=OsFbox275%2C Os_F0483;Oryzabase Gene Name Synonym(s)=F-box protein 275;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK099110 (DDBJ%2C Best hit),AK072324 (DDBJ%2C Best hit);ORF_evidence=B9FHD2 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023031J01,J023031I01;Oryzabase=17056;Expression=AK099110;TENOR=Os05t0540600-01;KEGG=Os05t0540600-01
Chr05	irgsp1_rep	five_prime_UTR	26847976	26847985	.	-	.	Parent=Os05t0540600-01
Chr05	irgsp1_rep	CDS	26846287	26847975	.	-	0	Parent=Os05t0540600-01
Chr05	irgsp1_rep	three_prime_UTR	26846176	26846286	.	-	.	Parent=Os05t0540600-01
Chr05	irgsp1_rep	mRNA	26849865	26857015	.	+	.	ID=Os05t0540800-01;Name=Os05t0540800-01;Locus_id=Os05g0540800;Note=Homeodomain-like containing protein.;Transcript_evidence=AK071090 (DDBJ%2C Best hit),AK060731 (DDBJ%2C Best hit);ORF_evidence=NP_001150819.1 (RefSeq);GO=Biological Process: negative regulation of transcription%2C DNA-dependent (GO:0045892),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),DNA methyltransferase 1-associated 1 (IPR008468),Homeodomain-like (IPR009057);NIAS_FLcDNA=J023079C11,001-032-A04;TENOR=Os05t0540800-01
Chr05	irgsp1_rep	five_prime_UTR	26849865	26849982	.	+	.	Parent=Os05t0540800-01
Chr05	irgsp1_rep	CDS	26849983	26850096	.	+	0	Parent=Os05t0540800-01
Chr05	irgsp1_rep	CDS	26850188	26850283	.	+	0	Parent=Os05t0540800-01
Chr05	irgsp1_rep	CDS	26850609	26850674	.	+	0	Parent=Os05t0540800-01
Chr05	irgsp1_rep	CDS	26850755	26850814	.	+	0	Parent=Os05t0540800-01
Chr05	irgsp1_rep	CDS	26850898	26850954	.	+	0	Parent=Os05t0540800-01
Chr05	irgsp1_rep	CDS	26851254	26851383	.	+	0	Parent=Os05t0540800-01
Chr05	irgsp1_rep	CDS	26851904	26851971	.	+	2	Parent=Os05t0540800-01
Chr05	irgsp1_rep	CDS	26852066	26852158	.	+	0	Parent=Os05t0540800-01
Chr05	irgsp1_rep	CDS	26852263	26852310	.	+	0	Parent=Os05t0540800-01
Chr05	irgsp1_rep	CDS	26852672	26852809	.	+	0	Parent=Os05t0540800-01
Chr05	irgsp1_rep	CDS	26853266	26853376	.	+	0	Parent=Os05t0540800-01
Chr05	irgsp1_rep	CDS	26853528	26853623	.	+	0	Parent=Os05t0540800-01
Chr05	irgsp1_rep	CDS	26854769	26854840	.	+	0	Parent=Os05t0540800-01
Chr05	irgsp1_rep	CDS	26855718	26855772	.	+	0	Parent=Os05t0540800-01
Chr05	irgsp1_rep	CDS	26855868	26855902	.	+	2	Parent=Os05t0540800-01
Chr05	irgsp1_rep	CDS	26856381	26856458	.	+	0	Parent=Os05t0540800-01
Chr05	irgsp1_rep	three_prime_UTR	26856459	26856506	.	+	.	Parent=Os05t0540800-01
Chr05	irgsp1_rep	three_prime_UTR	26856598	26857015	.	+	.	Parent=Os05t0540800-01
Chr05	irgsp1_rep	mRNA	26852108	26855774	.	+	.	ID=Os05t0540800-02;Name=Os05t0540800-02;Locus_id=Os05g0540800;Note=Similar to DNA methyltransferase 1-associated protein 1.;Transcript_evidence=AK058860 (DDBJ%2C Best hit);ORF_evidence=NP_001150819.1 (RefSeq);GO=Biological Process: negative regulation of transcription%2C DNA-dependent (GO:0045892),Cellular Component: nucleus (GO:0005634);InterPro=DNA methyltransferase 1-associated 1 (IPR008468);NIAS_FLcDNA=001-005-E11;Expression=AK058860;TENOR=Os05t0540800-02;KEGG=Os05t0540800-02
Chr05	irgsp1_rep	CDS	26852108	26852158	.	+	0	Parent=Os05t0540800-02
Chr05	irgsp1_rep	CDS	26852263	26852310	.	+	0	Parent=Os05t0540800-02
Chr05	irgsp1_rep	CDS	26852672	26852809	.	+	0	Parent=Os05t0540800-02
Chr05	irgsp1_rep	CDS	26853266	26853376	.	+	0	Parent=Os05t0540800-02
Chr05	irgsp1_rep	CDS	26853528	26853623	.	+	0	Parent=Os05t0540800-02
Chr05	irgsp1_rep	CDS	26854769	26854840	.	+	0	Parent=Os05t0540800-02
Chr05	irgsp1_rep	CDS	26855718	26855774	.	+	0	Parent=Os05t0540800-02
Chr05	irgsp1_rep	mRNA	26858393	26859779	.	-	.	ID=Os05t0540900-01;Name=Os05t0540900-01;Locus_id=Os05g0540900;Note=Conserved hypothetical protein.;Transcript_evidence=AK072284 (DDBJ%2C Best hit),AK060489 (DDBJ%2C Best hit);ORF_evidence=A2Y706 (UniProt);NIAS_FLcDNA=J023018F03,001-015-C07;Expression=AK072284;TENOR=Os05t0540900-01;KEGG=Os05t0540900-01
Chr05	irgsp1_rep	five_prime_UTR	26859691	26859779	.	-	.	Parent=Os05t0540900-01
Chr05	irgsp1_rep	CDS	26858560	26859690	.	-	0	Parent=Os05t0540900-01
Chr05	irgsp1_rep	three_prime_UTR	26858393	26858559	.	-	.	Parent=Os05t0540900-01
Chr05	irgsp1_rep	mRNA	26858474	26860247	.	+	.	ID=Os05t0541000-01;Name=Os05t0541000-01;Locus_id=Os05g0541000;Note=Hypothetical protein.;Transcript_evidence=AK106948 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-119-E01;Expression=AK106948;TENOR=Os05t0541000-01;KEGG=Os05t0541000-01
Chr05	irgsp1_rep	five_prime_UTR	26858474	26859468	.	+	.	Parent=Os05t0541000-01
Chr05	irgsp1_rep	CDS	26859469	26859708	.	+	0	Parent=Os05t0541000-01
Chr05	irgsp1_rep	three_prime_UTR	26859709	26860247	.	+	.	Parent=Os05t0541000-01
Chr05	irgsp1_rep	mRNA	26863363	26866131	.	+	.	ID=Os05t0541100-01;Name=Os05t0541100-01;Locus_id=Os05g0541100;Note=IQ calmodulin-binding region domain containing protein.;Transcript_evidence=AK107193 (DDBJ%2C Best hit);ORF_evidence=NP_001148955.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);NIAS_FLcDNA=002-125-A06;Expression=AK107193;TENOR=Os05t0541100-01;KEGG=Os05t0541100-01
Chr05	irgsp1_rep	five_prime_UTR	26863363	26863418	.	+	.	Parent=Os05t0541100-01
Chr05	irgsp1_rep	CDS	26863419	26863697	.	+	0	Parent=Os05t0541100-01
Chr05	irgsp1_rep	CDS	26863791	26864018	.	+	0	Parent=Os05t0541100-01
Chr05	irgsp1_rep	CDS	26865152	26865265	.	+	0	Parent=Os05t0541100-01
Chr05	irgsp1_rep	CDS	26865352	26865957	.	+	0	Parent=Os05t0541100-01
Chr05	irgsp1_rep	three_prime_UTR	26865958	26866131	.	+	.	Parent=Os05t0541100-01
Chr05	irgsp1_rep	mRNA	26868399	26870416	.	+	.	ID=Os05t0541200-01;Name=Os05t0541200-01;Locus_id=Os05g0541200;CGSNL Gene Symbol=LOGL7;CGSNL Gene Name=LONELY GUY LIKE PHOSPHORIBOHYDROLASE 7;Oryzabase Gene Symbol Synonym(s)=LOGL7;Oryzabase Gene Name Synonym(s)=LOG LIKE phosphoribohydrolase 7%2C LOG LIKE 7;Note=Similar to Lysine decarboxylase-like protein.;Transcript_evidence=AK068633 (DDBJ%2C Best hit);ORF_evidence=B6UAL5 (UniProt);InterPro=Cytokinin riboside 5&apos%3B-monophosphate phosphoribohydrolase LOG (IPR005269);NIAS_FLcDNA=J013157L23;Oryzabase=9852;Expression=AK068633;TENOR=Os05t0541200-01;KEGG=Os05t0541200-01
Chr05	irgsp1_rep	five_prime_UTR	26868399	26868460	.	+	.	Parent=Os05t0541200-01
Chr05	irgsp1_rep	CDS	26868461	26868592	.	+	0	Parent=Os05t0541200-01
Chr05	irgsp1_rep	CDS	26868748	26868845	.	+	0	Parent=Os05t0541200-01
Chr05	irgsp1_rep	CDS	26869013	26869043	.	+	1	Parent=Os05t0541200-01
Chr05	irgsp1_rep	CDS	26869583	26869682	.	+	0	Parent=Os05t0541200-01
Chr05	irgsp1_rep	CDS	26869811	26869881	.	+	2	Parent=Os05t0541200-01
Chr05	irgsp1_rep	CDS	26869996	26870139	.	+	0	Parent=Os05t0541200-01
Chr05	irgsp1_rep	CDS	26870221	26870316	.	+	0	Parent=Os05t0541200-01
Chr05	irgsp1_rep	three_prime_UTR	26870317	26870416	.	+	.	Parent=Os05t0541200-01
Chr05	irgsp1_rep	mRNA	26868480	26868848	.	-	.	ID=Os05t0541250-00;Name=Os05t0541250-00;Locus_id=Os05g0541250;Note=Non-protein coding transcript.;Transcript_evidence=AK374302 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0541250-00
Chr05	irgsp1_rep	exon	26868480	26868848	.	-	.	Parent=Os05t0541250-00
Chr05	irgsp1_rep	mRNA	26870451	26870992	.	-	.	ID=Os05t0541301-00;Name=Os05t0541301-00;Locus_id=Os05g0541301;Note=Hypothetical gene.;Transcript_evidence=DQ280329 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os05t0541301-00;KEGG=Os05t0541301-00
Chr05	irgsp1_rep	five_prime_UTR	26870968	26870992	.	-	.	Parent=Os05t0541301-00
Chr05	irgsp1_rep	CDS	26870563	26870967	.	-	0	Parent=Os05t0541301-00
Chr05	irgsp1_rep	three_prime_UTR	26870451	26870562	.	-	.	Parent=Os05t0541301-00
Chr05	irgsp1_rep	mRNA	26879444	26881353	.	+	.	ID=Os05t0541400-01;Name=Os05t0541400-01;Locus_id=Os05g0541400;RAP-DB Gene Symbol Synonym(s)=OsLF;RAP-DB Gene Name Synonym(s)=Oryza sativa late flowering;Oryzabase Gene Symbol Synonym(s)=OsLF%2C LF%2C OsbHLH119;Oryzabase Gene Name Synonym(s)=late flowering%2C basic helix-loop-helix protein 119;Note=Atypical bHLH transcription factor%2C Regulation of flowering time;Transcript_evidence=Inferred from literature;ORF_evidence=A0A0P0WQ90;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Helix-loop-helix DNA-binding domain superfamily (IPR036638),Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);Manual Curation=September 19%2C 2017;Literature_PMID=25400654,22973062,21549224;Oryzabase=14339;TENOR=Os05t0541400-00;Subcellular location=nucleus (GO:0005634)
Chr05	irgsp1_rep	five_prime_UTR	26879444	26879576	.	+	.	Parent=Os05t0541400-01
Chr05	irgsp1_rep	five_prime_UTR	26879808	26879890	.	+	.	Parent=Os05t0541400-01
Chr05	irgsp1_rep	CDS	26879891	26881141	.	+	0	Parent=Os05t0541400-01
Chr05	irgsp1_rep	three_prime_UTR	26881142	26881353	.	+	.	Parent=Os05t0541400-01
Chr05	irgsp1_rep	mRNA	26884955	26887331	.	+	.	ID=Os05t0541500-01;Name=Os05t0541500-01;Locus_id=Os05g0541500;Oryzabase Gene Symbol Synonym(s)=OsFbox276%2C Os_F0412;Oryzabase Gene Name Synonym(s)=F-box protein 276;Note=Conserved hypothetical protein.;Transcript_evidence=AK101190 (DDBJ%2C Best hit),AK101531 (DDBJ%2C Best hit);ORF_evidence=B9FLE2 (UniProt);NIAS_FLcDNA=J033030F10,J033048A09;Oryzabase=17057;TENOR=Os05t0541500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	26884955	26885126	.	+	.	Parent=Os05t0541500-01
Chr05	irgsp1_rep	CDS	26885127	26885372	.	+	0	Parent=Os05t0541500-01
Chr05	irgsp1_rep	three_prime_UTR	26885373	26887331	.	+	.	Parent=Os05t0541500-01
Chr05	irgsp1_rep	mRNA	26891037	26896830	.	+	.	ID=Os05t0541700-01;Name=Os05t0541700-01;Locus_id=Os05g0541700;Note=Protein of unknown function DUF1639 domain containing protein.;Transcript_evidence=AK243316 (DDBJ%2C Best hit);ORF_evidence=B9FHD5 (UniProt);InterPro=Protein of unknown function DUF1639 (IPR012438);NIAS_FLcDNA=J100056H13;TENOR=Os05t0541700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	26891037	26891144	.	+	.	Parent=Os05t0541700-01
Chr05	irgsp1_rep	CDS	26891145	26891256	.	+	0	Parent=Os05t0541700-01
Chr05	irgsp1_rep	CDS	26892680	26892974	.	+	2	Parent=Os05t0541700-01
Chr05	irgsp1_rep	CDS	26894601	26894910	.	+	1	Parent=Os05t0541700-01
Chr05	irgsp1_rep	CDS	26896078	26896155	.	+	0	Parent=Os05t0541700-01
Chr05	irgsp1_rep	CDS	26896264	26896314	.	+	0	Parent=Os05t0541700-01
Chr05	irgsp1_rep	three_prime_UTR	26896315	26896830	.	+	.	Parent=Os05t0541700-01
Chr05	irgsp1_rep	mRNA	26897934	26898364	.	-	.	ID=Os05t0541750-01;Name=Os05t0541750-01;Locus_id=Os05g0541750;Oryzabase Gene Symbol Synonym(s)=OsAGPEP3;Oryzabase Gene Name Synonym(s)=arabinogalactan peptide 3;Note=Hypothetical gene.;Transcript_evidence=AK243547 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J100079E09;Oryzabase=14065;TENOR=Os05t0541750-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	26898364	26898364	.	-	.	Parent=Os05t0541750-01
Chr05	irgsp1_rep	CDS	26898103	26898363	.	-	0	Parent=Os05t0541750-01
Chr05	irgsp1_rep	three_prime_UTR	26897934	26898102	.	-	.	Parent=Os05t0541750-01
Chr05	irgsp1_rep	mRNA	26900127	26901512	.	+	.	ID=Os05t0541800-01;Name=Os05t0541800-01;Locus_id=Os05g0541800;Note=Similar to Ipomoelin.;Transcript_evidence=AK071854 (DDBJ%2C Best hit);ORF_evidence=B6T6H0 (UniProt);InterPro=Mannose-binding lectin (IPR001229);NIAS_FLcDNA=J023117P14;Expression=AK071854;TENOR=Os05t0541800-01;KEGG=Os05t0541800-01
Chr05	irgsp1_rep	five_prime_UTR	26900127	26900246	.	+	.	Parent=Os05t0541800-01
Chr05	irgsp1_rep	CDS	26900247	26900249	.	+	0	Parent=Os05t0541800-01
Chr05	irgsp1_rep	CDS	26900377	26900655	.	+	0	Parent=Os05t0541800-01
Chr05	irgsp1_rep	three_prime_UTR	26900656	26901512	.	+	.	Parent=Os05t0541800-01
Chr05	irgsp1_rep	mRNA	26902013	26905007	.	-	.	ID=Os05t0541900-01;Name=Os05t0541900-01;Locus_id=Os05g0541900;Note=Similar to 60S ribosomal protein l28.;Transcript_evidence=AK066599 (DDBJ%2C Best hit);ORF_evidence=A6MZK4 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L28e (IPR002672);NIAS_FLcDNA=J013069H24;TENOR=Os05t0541900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	26904943	26905007	.	-	.	Parent=Os05t0541900-01
Chr05	irgsp1_rep	five_prime_UTR	26904442	26904451	.	-	.	Parent=Os05t0541900-01
Chr05	irgsp1_rep	CDS	26904294	26904441	.	-	0	Parent=Os05t0541900-01
Chr05	irgsp1_rep	CDS	26903937	26904190	.	-	2	Parent=Os05t0541900-01
Chr05	irgsp1_rep	three_prime_UTR	26902013	26903936	.	-	.	Parent=Os05t0541900-01
Chr05	irgsp1_rep	mRNA	26907339	26907602	.	-	.	ID=Os05t0542001-00;Name=Os05t0542001-00;Locus_id=Os05g0542001;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001174508.1 (RefSeq);TENOR=Os05t0542001-00;KEGG=Os05t0542001-00
Chr05	irgsp1_rep	CDS	26907339	26907602	.	-	0	Parent=Os05t0542001-00
Chr05	irgsp1_rep	mRNA	26907931	26910905	.	-	.	ID=Os05t0542100-01;Name=Os05t0542100-01;Locus_id=Os05g0542100;Note=Similar to Fiber protein Fb11.;Transcript_evidence=AK120879 (DDBJ%2C Best hit);ORF_evidence=B4FKL9 (UniProt);NIAS_FLcDNA=J023027J05;Expression=AK120879;TENOR=Os05t0542100-01;KEGG=Os05t0542100-01
Chr05	irgsp1_rep	five_prime_UTR	26910815	26910905	.	-	.	Parent=Os05t0542100-01
Chr05	irgsp1_rep	CDS	26910736	26910814	.	-	0	Parent=Os05t0542100-01
Chr05	irgsp1_rep	CDS	26908756	26908838	.	-	2	Parent=Os05t0542100-01
Chr05	irgsp1_rep	CDS	26908145	26908180	.	-	0	Parent=Os05t0542100-01
Chr05	irgsp1_rep	three_prime_UTR	26907931	26908144	.	-	.	Parent=Os05t0542100-01
Chr05	irgsp1_rep	mRNA	26911303	26914371	.	+	.	ID=Os05t0542150-01;Name=Os05t0542150-01;Locus_id=Os05g0542150;Note=Hypothetical gene.;Transcript_evidence=AK241175 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065118F11;TENOR=Os05t0542150-01;KEGG=Os05t0542150-01
Chr05	irgsp1_rep	five_prime_UTR	26911303	26911350	.	+	.	Parent=Os05t0542150-01
Chr05	irgsp1_rep	five_prime_UTR	26911436	26911707	.	+	.	Parent=Os05t0542150-01
Chr05	irgsp1_rep	five_prime_UTR	26911816	26913678	.	+	.	Parent=Os05t0542150-01
Chr05	irgsp1_rep	CDS	26913679	26913915	.	+	0	Parent=Os05t0542150-01
Chr05	irgsp1_rep	three_prime_UTR	26913916	26914371	.	+	.	Parent=Os05t0542150-01
Chr05	irgsp1_rep	mRNA	26913398	26917388	.	-	.	ID=Os05t0542200-01;Name=Os05t0542200-01;Locus_id=Os05g0542200;Note=Alpha/beta hydrolase fold-1 domain containing protein.;Transcript_evidence=AK071306 (DDBJ%2C Best hit);ORF_evidence=B7EJU0 (UniProt);NIAS_FLcDNA=J023088C20;Expression=AK071306;TENOR=Os05t0542200-01;KEGG=Os05t0542200-01
Chr05	irgsp1_rep	five_prime_UTR	26917071	26917388	.	-	.	Parent=Os05t0542200-01
Chr05	irgsp1_rep	CDS	26916962	26917070	.	-	0	Parent=Os05t0542200-01
Chr05	irgsp1_rep	CDS	26916637	26916832	.	-	2	Parent=Os05t0542200-01
Chr05	irgsp1_rep	CDS	26916182	26916264	.	-	1	Parent=Os05t0542200-01
Chr05	irgsp1_rep	CDS	26915937	26916037	.	-	2	Parent=Os05t0542200-01
Chr05	irgsp1_rep	CDS	26915727	26915822	.	-	0	Parent=Os05t0542200-01
Chr05	irgsp1_rep	CDS	26915578	26915631	.	-	0	Parent=Os05t0542200-01
Chr05	irgsp1_rep	CDS	26914975	26915123	.	-	0	Parent=Os05t0542200-01
Chr05	irgsp1_rep	CDS	26914761	26914878	.	-	1	Parent=Os05t0542200-01
Chr05	irgsp1_rep	CDS	26914121	26914208	.	-	0	Parent=Os05t0542200-01
Chr05	irgsp1_rep	CDS	26913827	26914035	.	-	2	Parent=Os05t0542200-01
Chr05	irgsp1_rep	three_prime_UTR	26913826	26913826	.	-	.	Parent=Os05t0542200-01
Chr05	irgsp1_rep	three_prime_UTR	26913398	26913734	.	-	.	Parent=Os05t0542200-01
Chr05	irgsp1_rep	mRNA	26913398	26917215	.	-	.	ID=Os05t0542200-02;Name=Os05t0542200-02;Locus_id=Os05g0542200;Note=Similar to catalytic/ hydrolase.;Transcript_evidence=AK071703 (DDBJ%2C Best hit);ORF_evidence=NP_001148147.1 (RefSeq);NIAS_FLcDNA=J023112L03;Expression=AK071703;TENOR=Os05t0542200-02;KEGG=Os05t0542200-02
Chr05	irgsp1_rep	five_prime_UTR	26917071	26917215	.	-	.	Parent=Os05t0542200-02
Chr05	irgsp1_rep	CDS	26916962	26917070	.	-	0	Parent=Os05t0542200-02
Chr05	irgsp1_rep	CDS	26916637	26916832	.	-	2	Parent=Os05t0542200-02
Chr05	irgsp1_rep	CDS	26916182	26916264	.	-	1	Parent=Os05t0542200-02
Chr05	irgsp1_rep	CDS	26915937	26916037	.	-	2	Parent=Os05t0542200-02
Chr05	irgsp1_rep	CDS	26915727	26915822	.	-	0	Parent=Os05t0542200-02
Chr05	irgsp1_rep	CDS	26915578	26915631	.	-	0	Parent=Os05t0542200-02
Chr05	irgsp1_rep	CDS	26914975	26915123	.	-	0	Parent=Os05t0542200-02
Chr05	irgsp1_rep	CDS	26914761	26914878	.	-	1	Parent=Os05t0542200-02
Chr05	irgsp1_rep	CDS	26914121	26914208	.	-	0	Parent=Os05t0542200-02
Chr05	irgsp1_rep	CDS	26913827	26913909	.	-	2	Parent=Os05t0542200-02
Chr05	irgsp1_rep	three_prime_UTR	26913826	26913826	.	-	.	Parent=Os05t0542200-02
Chr05	irgsp1_rep	three_prime_UTR	26913398	26913734	.	-	.	Parent=Os05t0542200-02
Chr05	irgsp1_rep	mRNA	26913398	26915974	.	-	.	ID=Os05t0542200-03;Name=Os05t0542200-03;Locus_id=Os05g0542200;Note=Similar to cDNA clone:J023112L03%2C full insert sequence.;Transcript_evidence=AK060785 (DDBJ%2C Best hit);ORF_evidence=B7EJU0 (UniProt);NIAS_FLcDNA=001-033-D03;Expression=AK060785;TENOR=Os05t0542200-03;KEGG=Os05t0542200-03
Chr05	irgsp1_rep	five_prime_UTR	26915973	26915974	.	-	.	Parent=Os05t0542200-03
Chr05	irgsp1_rep	CDS	26915937	26915972	.	-	0	Parent=Os05t0542200-03
Chr05	irgsp1_rep	CDS	26915727	26915822	.	-	0	Parent=Os05t0542200-03
Chr05	irgsp1_rep	CDS	26915578	26915631	.	-	0	Parent=Os05t0542200-03
Chr05	irgsp1_rep	CDS	26914975	26915123	.	-	0	Parent=Os05t0542200-03
Chr05	irgsp1_rep	CDS	26914761	26914878	.	-	1	Parent=Os05t0542200-03
Chr05	irgsp1_rep	CDS	26914121	26914208	.	-	0	Parent=Os05t0542200-03
Chr05	irgsp1_rep	CDS	26913827	26914035	.	-	2	Parent=Os05t0542200-03
Chr05	irgsp1_rep	three_prime_UTR	26913826	26913826	.	-	.	Parent=Os05t0542200-03
Chr05	irgsp1_rep	three_prime_UTR	26913398	26913734	.	-	.	Parent=Os05t0542200-03
Chr05	irgsp1_rep	mRNA	26922233	26923380	.	-	.	ID=Os05t0542300-01;Name=Os05t0542300-01;Locus_id=Os05g0542300;Note=Conserved hypothetical protein.;Transcript_evidence=AK062488 (DDBJ%2C Best hit);ORF_evidence=B8AW78 (UniProt);NIAS_FLcDNA=001-103-H03;Expression=AK062488;TENOR=Os05t0542300-01;KEGG=Os05t0542300-01
Chr05	irgsp1_rep	five_prime_UTR	26923317	26923380	.	-	.	Parent=Os05t0542300-01
Chr05	irgsp1_rep	CDS	26923219	26923316	.	-	0	Parent=Os05t0542300-01
Chr05	irgsp1_rep	CDS	26923027	26923078	.	-	1	Parent=Os05t0542300-01
Chr05	irgsp1_rep	CDS	26922496	26922603	.	-	0	Parent=Os05t0542300-01
Chr05	irgsp1_rep	three_prime_UTR	26922233	26922495	.	-	.	Parent=Os05t0542300-01
Chr05	irgsp1_rep	mRNA	26927607	26928882	.	+	.	ID=Os05t0542500-01;Name=Os05t0542500-01;Locus_id=Os05g0542500;CGSNL Gene Symbol=LEA3-1;CGSNL Gene Name=LATE EMBRYOGENESIS ABUNDANT 3-1;Oryzabase Gene Symbol Synonym(s)=OsLEA3-1%2C OsLea3-1%2C LEA3%2C OsLEA3%2C OsLEA19%2C OsLEA19a%2C LEA19%2C OsLEA19b%2C OsLEA3%2C Oslea3%2C oslea3;Oryzabase Gene Name Synonym(s)=Late embryogenesis abundant protein 3%2C late embryogenesis abundant protein 19%2C Group 3 LEA (type I) protein;Note=Similar to Isoform 2 of Late embryogenesis abundant protein%2C group 3.;Transcript_evidence=AK063984 (DDBJ%2C Best hit);ORF_evidence=P0C5A4-2 (UniProt);InterPro=Late embryogenesis abundant protein%2C LEA-3 (IPR004238);NIAS_FLcDNA=001-124-D08;Oryzabase=7217;Expression=AK063984;TENOR=Os05t0542500-01;KEGG=Os05t0542500-01
Chr05	irgsp1_rep	five_prime_UTR	26927607	26927879	.	+	.	Parent=Os05t0542500-01
Chr05	irgsp1_rep	CDS	26927880	26928317	.	+	0	Parent=Os05t0542500-01
Chr05	irgsp1_rep	three_prime_UTR	26928318	26928882	.	+	.	Parent=Os05t0542500-01
Chr05	irgsp1_rep	mRNA	26927609	26928879	.	+	.	ID=Os05t0542500-02;Name=Os05t0542500-02;Locus_id=Os05g0542500;CGSNL Gene Symbol=LEA3-1;CGSNL Gene Name=LATE EMBRYOGENESIS ABUNDANT 3-1;Oryzabase Gene Symbol Synonym(s)=OsLEA3-1%2C OsLea3-1%2C LEA3%2C OsLEA3%2C OsLEA19%2C OsLEA19a%2C LEA19%2C OsLEA19b%2C OsLEA3%2C Oslea3%2C oslea3;Oryzabase Gene Name Synonym(s)=Late embryogenesis abundant protein 3%2C late embryogenesis abundant protein 19%2C Group 3 LEA (type I) protein;Note=LEA-like protein.;Transcript_evidence=AK119713 (DDBJ%2C Best hit);ORF_evidence=P0C5A4 (UniProt);InterPro=Late embryogenesis abundant protein%2C LEA-3 (IPR004238);NIAS_FLcDNA=002-157-F03;Oryzabase=7217;Expression=AK119713;TENOR=Os05t0542500-02;KEGG=Os05t0542500-02
Chr05	irgsp1_rep	five_prime_UTR	26927609	26927709	.	+	.	Parent=Os05t0542500-02
Chr05	irgsp1_rep	CDS	26927710	26927769	.	+	0	Parent=Os05t0542500-02
Chr05	irgsp1_rep	CDS	26927862	26928248	.	+	0	Parent=Os05t0542500-02
Chr05	irgsp1_rep	CDS	26928460	26928615	.	+	0	Parent=Os05t0542500-02
Chr05	irgsp1_rep	three_prime_UTR	26928616	26928879	.	+	.	Parent=Os05t0542500-02
Chr05	irgsp1_rep	mRNA	26930547	26935797	.	+	.	ID=Os05t0542600-01;Name=Os05t0542600-01;Locus_id=Os05g0542600;Note=Mov34/MPN/PAD-1 family protein.;Transcript_evidence=AK101373 (DDBJ%2C Best hit),AK060408 (DDBJ%2C Best hit);ORF_evidence=NP_001149966.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Mov34/MPN/PAD-1 (IPR000555);NIAS_FLcDNA=J033035N15,001-010-D07;TENOR=Os05t0542600-01
Chr05	irgsp1_rep	five_prime_UTR	26930547	26930648	.	+	.	Parent=Os05t0542600-01
Chr05	irgsp1_rep	CDS	26930649	26930759	.	+	0	Parent=Os05t0542600-01
Chr05	irgsp1_rep	CDS	26930864	26930989	.	+	0	Parent=Os05t0542600-01
Chr05	irgsp1_rep	CDS	26931097	26931184	.	+	0	Parent=Os05t0542600-01
Chr05	irgsp1_rep	CDS	26931730	26931815	.	+	2	Parent=Os05t0542600-01
Chr05	irgsp1_rep	CDS	26931921	26932106	.	+	0	Parent=Os05t0542600-01
Chr05	irgsp1_rep	CDS	26933908	26934101	.	+	0	Parent=Os05t0542600-01
Chr05	irgsp1_rep	CDS	26934660	26934818	.	+	1	Parent=Os05t0542600-01
Chr05	irgsp1_rep	CDS	26934904	26934984	.	+	1	Parent=Os05t0542600-01
Chr05	irgsp1_rep	CDS	26935075	26935129	.	+	1	Parent=Os05t0542600-01
Chr05	irgsp1_rep	CDS	26935205	26935381	.	+	0	Parent=Os05t0542600-01
Chr05	irgsp1_rep	three_prime_UTR	26935382	26935797	.	+	.	Parent=Os05t0542600-01
Chr05	irgsp1_rep	mRNA	26930578	26935513	.	-	.	ID=Os05t0542666-00;Name=Os05t0542666-00;Locus_id=Os05g0542666;Note=Hypothetical protein.;Transcript_evidence=tplb0059d21 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0542666-00
Chr05	irgsp1_rep	five_prime_UTR	26935203	26935513	.	-	.	Parent=Os05t0542666-00
Chr05	irgsp1_rep	five_prime_UTR	26935051	26935123	.	-	.	Parent=Os05t0542666-00
Chr05	irgsp1_rep	five_prime_UTR	26934902	26934961	.	-	.	Parent=Os05t0542666-00
Chr05	irgsp1_rep	five_prime_UTR	26934657	26934816	.	-	.	Parent=Os05t0542666-00
Chr05	irgsp1_rep	five_prime_UTR	26933886	26934098	.	-	.	Parent=Os05t0542666-00
Chr05	irgsp1_rep	five_prime_UTR	26931919	26932083	.	-	.	Parent=Os05t0542666-00
Chr05	irgsp1_rep	five_prime_UTR	26931721	26931807	.	-	.	Parent=Os05t0542666-00
Chr05	irgsp1_rep	CDS	26931712	26931720	.	-	0	Parent=Os05t0542666-00
Chr05	irgsp1_rep	CDS	26931097	26931168	.	-	0	Parent=Os05t0542666-00
Chr05	irgsp1_rep	CDS	26930887	26930994	.	-	0	Parent=Os05t0542666-00
Chr05	irgsp1_rep	CDS	26930578	26930786	.	-	0	Parent=Os05t0542666-00
Chr05	irgsp1_rep	mRNA	26937607	26938300	.	+	.	ID=Os05t0542732-00;Name=Os05t0542732-00;Locus_id=Os05g0542732;Note=Conserved hypothetical protein.;Transcript_evidence=CU406878 (DDBJ%2C Best hit);ORF_evidence=B9FHK1 (UniProt);TENOR=Os05t0542732-00
Chr05	irgsp1_rep	five_prime_UTR	26937607	26937694	.	+	.	Parent=Os05t0542732-00
Chr05	irgsp1_rep	CDS	26937695	26938030	.	+	0	Parent=Os05t0542732-00
Chr05	irgsp1_rep	three_prime_UTR	26938031	26938300	.	+	.	Parent=Os05t0542732-00
Chr05	irgsp1_rep	mRNA	26940318	26943164	.	+	.	ID=Os05t0542800-01;Name=Os05t0542800-01;Locus_id=Os05g0542800;Oryzabase Gene Symbol Synonym(s)=OsPGL9%2C PGL9;Oryzabase Gene Name Synonym(s)=Polygalacturonases-Like 9%2C PG-like 9;Note=Pectin lyase fold/virulence factor domain containing protein.;Transcript_evidence=AK106049 (DDBJ%2C Best hit);ORF_evidence=NP_001151886.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=001-206-E12;Oryzabase=22286;Expression=AK106049;TENOR=Os05t0542800-01;KEGG=Os05t0542800-01
Chr05	irgsp1_rep	five_prime_UTR	26940318	26940489	.	+	.	Parent=Os05t0542800-01
Chr05	irgsp1_rep	CDS	26940490	26940645	.	+	0	Parent=Os05t0542800-01
Chr05	irgsp1_rep	CDS	26940731	26940862	.	+	0	Parent=Os05t0542800-01
Chr05	irgsp1_rep	CDS	26940962	26941132	.	+	0	Parent=Os05t0542800-01
Chr05	irgsp1_rep	CDS	26941210	26941236	.	+	0	Parent=Os05t0542800-01
Chr05	irgsp1_rep	CDS	26941341	26941548	.	+	0	Parent=Os05t0542800-01
Chr05	irgsp1_rep	CDS	26941951	26942032	.	+	2	Parent=Os05t0542800-01
Chr05	irgsp1_rep	CDS	26942175	26942283	.	+	1	Parent=Os05t0542800-01
Chr05	irgsp1_rep	CDS	26942431	26942547	.	+	0	Parent=Os05t0542800-01
Chr05	irgsp1_rep	CDS	26942673	26942815	.	+	0	Parent=Os05t0542800-01
Chr05	irgsp1_rep	CDS	26942870	26942951	.	+	1	Parent=Os05t0542800-01
Chr05	irgsp1_rep	three_prime_UTR	26942952	26943164	.	+	.	Parent=Os05t0542800-01
Chr05	irgsp1_rep	mRNA	26940356	26943170	.	+	.	ID=Os05t0542800-02;Name=Os05t0542800-02;Locus_id=Os05g0542800;Oryzabase Gene Symbol Synonym(s)=OsPGL9%2C PGL9;Oryzabase Gene Name Synonym(s)=Polygalacturonases-Like 9%2C PG-like 9;Note=Similar to polygalacturonase.;Transcript_evidence=AK105858 (DDBJ%2C Best hit);ORF_evidence=NP_001151886.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=001-203-H08;Oryzabase=22286;Expression=AK105858;TENOR=Os05t0542800-02;KEGG=Os05t0542800-02
Chr05	irgsp1_rep	five_prime_UTR	26940356	26940489	.	+	.	Parent=Os05t0542800-02
Chr05	irgsp1_rep	CDS	26940490	26940645	.	+	0	Parent=Os05t0542800-02
Chr05	irgsp1_rep	CDS	26940731	26940862	.	+	0	Parent=Os05t0542800-02
Chr05	irgsp1_rep	CDS	26940962	26941132	.	+	0	Parent=Os05t0542800-02
Chr05	irgsp1_rep	CDS	26941210	26941236	.	+	0	Parent=Os05t0542800-02
Chr05	irgsp1_rep	CDS	26941341	26941548	.	+	0	Parent=Os05t0542800-02
Chr05	irgsp1_rep	CDS	26941951	26942032	.	+	2	Parent=Os05t0542800-02
Chr05	irgsp1_rep	CDS	26942175	26942283	.	+	1	Parent=Os05t0542800-02
Chr05	irgsp1_rep	CDS	26942431	26942547	.	+	0	Parent=Os05t0542800-02
Chr05	irgsp1_rep	CDS	26942673	26942951	.	+	0	Parent=Os05t0542800-02
Chr05	irgsp1_rep	three_prime_UTR	26942952	26943170	.	+	.	Parent=Os05t0542800-02
Chr05	irgsp1_rep	mRNA	26940430	26943137	.	+	.	ID=Os05t0542800-03;Name=Os05t0542800-03;Locus_id=Os05g0542800;Oryzabase Gene Symbol Synonym(s)=OsPGL9%2C PGL9;Oryzabase Gene Name Synonym(s)=Polygalacturonases-Like 9%2C PG-like 9;Note=Similar to polygalacturonase.;Transcript_evidence=AK071271 (DDBJ%2C Best hit);ORF_evidence=NP_001151886.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=J023088D14;Oryzabase=22286;Expression=AK071271;TENOR=Os05t0542800-03;KEGG=Os05t0542800-03
Chr05	irgsp1_rep	five_prime_UTR	26940430	26940489	.	+	.	Parent=Os05t0542800-03
Chr05	irgsp1_rep	CDS	26940490	26940645	.	+	0	Parent=Os05t0542800-03
Chr05	irgsp1_rep	CDS	26940731	26940862	.	+	0	Parent=Os05t0542800-03
Chr05	irgsp1_rep	CDS	26940962	26941132	.	+	0	Parent=Os05t0542800-03
Chr05	irgsp1_rep	CDS	26941210	26941236	.	+	0	Parent=Os05t0542800-03
Chr05	irgsp1_rep	CDS	26941341	26941548	.	+	0	Parent=Os05t0542800-03
Chr05	irgsp1_rep	CDS	26941951	26942032	.	+	2	Parent=Os05t0542800-03
Chr05	irgsp1_rep	CDS	26942175	26942283	.	+	1	Parent=Os05t0542800-03
Chr05	irgsp1_rep	CDS	26942431	26942547	.	+	0	Parent=Os05t0542800-03
Chr05	irgsp1_rep	CDS	26942673	26942951	.	+	0	Parent=Os05t0542800-03
Chr05	irgsp1_rep	three_prime_UTR	26942952	26943137	.	+	.	Parent=Os05t0542800-03
Chr05	irgsp1_rep	mRNA	26943380	26945786	.	+	.	ID=Os05t0542900-01;Name=Os05t0542900-01;Locus_id=Os05g0542900;Oryzabase Gene Symbol Synonym(s)=OsPGL14%2C PGL14;Oryzabase Gene Name Synonym(s)=Polygalacturonases-Like 14%2C PG-like 14;Note=Pectin lyase fold domain containing protein.;Transcript_evidence=AK102925 (DDBJ%2C Best hit);ORF_evidence=NP_001151374.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=J033114D17;Oryzabase=22291;Expression=AK102925;TENOR=Os05t0542900-01;KEGG=Os05t0542900-01
Chr05	irgsp1_rep	five_prime_UTR	26943380	26943404	.	+	.	Parent=Os05t0542900-01
Chr05	irgsp1_rep	CDS	26943405	26943563	.	+	0	Parent=Os05t0542900-01
Chr05	irgsp1_rep	CDS	26943642	26943773	.	+	0	Parent=Os05t0542900-01
Chr05	irgsp1_rep	CDS	26943858	26944040	.	+	0	Parent=Os05t0542900-01
Chr05	irgsp1_rep	CDS	26944136	26944162	.	+	0	Parent=Os05t0542900-01
Chr05	irgsp1_rep	CDS	26944274	26944481	.	+	0	Parent=Os05t0542900-01
Chr05	irgsp1_rep	CDS	26944655	26944736	.	+	2	Parent=Os05t0542900-01
Chr05	irgsp1_rep	CDS	26944889	26944997	.	+	1	Parent=Os05t0542900-01
Chr05	irgsp1_rep	CDS	26945116	26945235	.	+	0	Parent=Os05t0542900-01
Chr05	irgsp1_rep	CDS	26945359	26945676	.	+	0	Parent=Os05t0542900-01
Chr05	irgsp1_rep	three_prime_UTR	26945677	26945786	.	+	.	Parent=Os05t0542900-01
Chr05	irgsp1_rep	mRNA	26948391	26949737	.	+	.	ID=Os05t0543000-01;Name=Os05t0543000-01;Locus_id=Os05g0543000;RAP-DB Gene Symbol Synonym(s)=OSIPP3;RAP-DB Gene Name Synonym(s)=pectin methylesterase inhibitor protein;Oryzabase Gene Symbol Synonym(s)=OSIPP3;Oryzabase Gene Name Synonym(s)=pectin methylesterase inhibitor protein;Note=Pectin methylesterase inhibitor protein;Transcript_evidence=AK107100;ORF_evidence=Q65XN3;GO=Molecular Function: enzyme inhibitor activity (GO:0004857);InterPro=Invertase/pectin methylesterase inhibitor domain superfamily (IPR035513),Pectinesterase inhibitor domain (IPR006501);NIAS_FLcDNA=002-122-A03;Manual Curation=August 3%2C 2020;Literature_PMID=26081459,23208453;Oryzabase=19910;Expression=AK107100;TENOR=Os05t0543000-01;KEGG=Os05t0543000-01
Chr05	irgsp1_rep	five_prime_UTR	26948391	26948535	.	+	.	Parent=Os05t0543000-01
Chr05	irgsp1_rep	CDS	26948536	26948733	.	+	0	Parent=Os05t0543000-01
Chr05	irgsp1_rep	CDS	26949159	26949581	.	+	0	Parent=Os05t0543000-01
Chr05	irgsp1_rep	three_prime_UTR	26949582	26949737	.	+	.	Parent=Os05t0543000-01
Chr05	irgsp1_rep	mRNA	26952587	26955912	.	-	.	ID=Os05t0543100-01;Name=Os05t0543100-01;Locus_id=Os05g0543100;Note=Similar to Clathrin coat assembly protein AP47 (Clathrin coat associated protein AP47) (Golgi adaptor AP-1 47 kDa protein) (HA1 47 kDa subunit) (Clathrin assembly protein assembly protein complex 1 medium chain) (Uncoordinated protein 101).;Transcript_evidence=AK065138 (DDBJ%2C Best hit);ORF_evidence=XP_002889832.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: clathrin adaptor complex (GO:0030131),Molecular Function: protein binding (GO:0005515);InterPro=Clathrin adaptor%2C mu subunit (IPR001392),Clathrin adaptor%2C mu subunit%2C C-terminal (IPR008968),Longin-like (IPR011012),Clathrin adaptor%2C mu subunit%2C conserved site (IPR018240),AP complex%2C mu/sigma subunit (IPR022775);NIAS_FLcDNA=J013002A10;Expression=AK065138;TENOR=Os05t0543100-01;KEGG=Os05t0543100-01
Chr05	irgsp1_rep	five_prime_UTR	26955693	26955912	.	-	.	Parent=Os05t0543100-01
Chr05	irgsp1_rep	CDS	26955561	26955692	.	-	0	Parent=Os05t0543100-01
Chr05	irgsp1_rep	CDS	26955330	26955479	.	-	0	Parent=Os05t0543100-01
Chr05	irgsp1_rep	CDS	26955165	26955227	.	-	0	Parent=Os05t0543100-01
Chr05	irgsp1_rep	CDS	26954884	26955060	.	-	0	Parent=Os05t0543100-01
Chr05	irgsp1_rep	CDS	26954692	26954795	.	-	0	Parent=Os05t0543100-01
Chr05	irgsp1_rep	CDS	26954007	26954114	.	-	1	Parent=Os05t0543100-01
Chr05	irgsp1_rep	CDS	26953804	26953900	.	-	1	Parent=Os05t0543100-01
Chr05	irgsp1_rep	CDS	26953616	26953713	.	-	0	Parent=Os05t0543100-01
Chr05	irgsp1_rep	CDS	26953376	26953517	.	-	1	Parent=Os05t0543100-01
Chr05	irgsp1_rep	CDS	26953163	26953285	.	-	0	Parent=Os05t0543100-01
Chr05	irgsp1_rep	CDS	26952972	26953070	.	-	0	Parent=Os05t0543100-01
Chr05	irgsp1_rep	three_prime_UTR	26952587	26952971	.	-	.	Parent=Os05t0543100-01
Chr05	irgsp1_rep	mRNA	26952967	26955727	.	+	.	ID=Os05t0543150-00;Name=Os05t0543150-00;Locus_id=Os05g0543150;Note=Hypothetical protein.;Transcript_evidence=tplb0037b12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0543150-00
Chr05	irgsp1_rep	five_prime_UTR	26952967	26953068	.	+	.	Parent=Os05t0543150-00
Chr05	irgsp1_rep	five_prime_UTR	26953161	26953284	.	+	.	Parent=Os05t0543150-00
Chr05	irgsp1_rep	five_prime_UTR	26953375	26953517	.	+	.	Parent=Os05t0543150-00
Chr05	irgsp1_rep	five_prime_UTR	26953616	26953706	.	+	.	Parent=Os05t0543150-00
Chr05	irgsp1_rep	five_prime_UTR	26953796	26953898	.	+	.	Parent=Os05t0543150-00
Chr05	irgsp1_rep	five_prime_UTR	26954005	26954008	.	+	.	Parent=Os05t0543150-00
Chr05	irgsp1_rep	CDS	26954009	26954116	.	+	0	Parent=Os05t0543150-00
Chr05	irgsp1_rep	CDS	26954697	26954793	.	+	0	Parent=Os05t0543150-00
Chr05	irgsp1_rep	CDS	26954882	26954922	.	+	2	Parent=Os05t0543150-00
Chr05	irgsp1_rep	three_prime_UTR	26954923	26955098	.	+	.	Parent=Os05t0543150-00
Chr05	irgsp1_rep	three_prime_UTR	26955310	26955473	.	+	.	Parent=Os05t0543150-00
Chr05	irgsp1_rep	three_prime_UTR	26955546	26955727	.	+	.	Parent=Os05t0543150-00
Chr05	irgsp1_rep	mRNA	26958516	26961422	.	+	.	ID=Os05t0543200-01;Name=Os05t0543200-01;Locus_id=Os05g0543200;Note=Similar to Ran GTPase activating protein.;Transcript_evidence=AK242655 (DDBJ%2C Best hit);ORF_evidence=B6T5J4 (UniProt);NIAS_FLcDNA=J090026K18;TENOR=Os05t0543200-01;KEGG=Os05t0543200-01
Chr05	irgsp1_rep	five_prime_UTR	26958516	26958667	.	+	.	Parent=Os05t0543200-01
Chr05	irgsp1_rep	five_prime_UTR	26959526	26959550	.	+	.	Parent=Os05t0543200-01
Chr05	irgsp1_rep	CDS	26959551	26961185	.	+	0	Parent=Os05t0543200-01
Chr05	irgsp1_rep	three_prime_UTR	26961186	26961422	.	+	.	Parent=Os05t0543200-01
Chr05	irgsp1_rep	mRNA	26963023	26965865	.	+	.	ID=Os05t0543300-01;Name=Os05t0543300-01;Locus_id=Os05g0543300;Oryzabase Gene Symbol Synonym(s)=OsWD40-121;Note=WD40 repeat%2C region domain containing protein.;Transcript_evidence=AK103378 (DDBJ%2C Best hit);ORF_evidence=NP_001152284.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J033127E04;Oryzabase=10802;Expression=AK103378;TENOR=Os05t0543300-01;KEGG=Os05t0543300-01
Chr05	irgsp1_rep	five_prime_UTR	26963023	26963128	.	+	.	Parent=Os05t0543300-01
Chr05	irgsp1_rep	CDS	26963129	26963203	.	+	0	Parent=Os05t0543300-01
Chr05	irgsp1_rep	CDS	26963286	26963386	.	+	0	Parent=Os05t0543300-01
Chr05	irgsp1_rep	CDS	26963988	26964161	.	+	1	Parent=Os05t0543300-01
Chr05	irgsp1_rep	CDS	26964241	26964340	.	+	1	Parent=Os05t0543300-01
Chr05	irgsp1_rep	CDS	26964458	26964574	.	+	0	Parent=Os05t0543300-01
Chr05	irgsp1_rep	CDS	26964661	26964798	.	+	0	Parent=Os05t0543300-01
Chr05	irgsp1_rep	CDS	26964896	26964977	.	+	0	Parent=Os05t0543300-01
Chr05	irgsp1_rep	CDS	26965423	26965472	.	+	2	Parent=Os05t0543300-01
Chr05	irgsp1_rep	CDS	26965540	26965665	.	+	0	Parent=Os05t0543300-01
Chr05	irgsp1_rep	three_prime_UTR	26965666	26965865	.	+	.	Parent=Os05t0543300-01
Chr05	irgsp1_rep	mRNA	26966645	26969894	.	-	.	ID=Os05t0543400-01;Name=Os05t0543400-01;Locus_id=Os05g0543400;Oryzabase Gene Symbol Synonym(s)=OsFPPS2%2C FPPS2;Oryzabase Gene Name Synonym(s)=farnesyl diphosphate synthase 2;Note=Similar to Farnesyl diphosphate synthase (Fragment).;Transcript_evidence=AK073822 (DDBJ%2C Best hit);ORF_evidence=NP_001105039.1 (RefSeq);GO=Biological Process: isoprenoid biosynthetic process (GO:0008299);InterPro=Polyprenyl synthetase (IPR000092),Terpenoid synthase (IPR008949);NIAS_FLcDNA=J033069I20;Oryzabase=11199;Expression=AK073822;TENOR=Os05t0543400-01;KEGG=Os05t0543400-01 (EC:2.5.1.1%2C EC:2.5.1.10)
Chr05	irgsp1_rep	five_prime_UTR	26969619	26969894	.	-	.	Parent=Os05t0543400-01
Chr05	irgsp1_rep	CDS	26969469	26969618	.	-	0	Parent=Os05t0543400-01
Chr05	irgsp1_rep	CDS	26968819	26968843	.	-	0	Parent=Os05t0543400-01
Chr05	irgsp1_rep	CDS	26968613	26968728	.	-	2	Parent=Os05t0543400-01
Chr05	irgsp1_rep	CDS	26968443	26968529	.	-	0	Parent=Os05t0543400-01
Chr05	irgsp1_rep	CDS	26968180	26968296	.	-	0	Parent=Os05t0543400-01
Chr05	irgsp1_rep	CDS	26968001	26968089	.	-	0	Parent=Os05t0543400-01
Chr05	irgsp1_rep	CDS	26967772	26967823	.	-	1	Parent=Os05t0543400-01
Chr05	irgsp1_rep	CDS	26967577	26967672	.	-	0	Parent=Os05t0543400-01
Chr05	irgsp1_rep	CDS	26967441	26967485	.	-	0	Parent=Os05t0543400-01
Chr05	irgsp1_rep	CDS	26967249	26967338	.	-	0	Parent=Os05t0543400-01
Chr05	irgsp1_rep	CDS	26967107	26967178	.	-	0	Parent=Os05t0543400-01
Chr05	irgsp1_rep	CDS	26966752	26966880	.	-	0	Parent=Os05t0543400-01
Chr05	irgsp1_rep	three_prime_UTR	26966645	26966751	.	-	.	Parent=Os05t0543400-01
Chr05	irgsp1_rep	mRNA	26966573	26969821	.	-	.	ID=Os05t0543400-02;Name=Os05t0543400-02;Locus_id=Os05g0543400;Oryzabase Gene Symbol Synonym(s)=OsFPPS2%2C FPPS2;Oryzabase Gene Name Synonym(s)=farnesyl diphosphate synthase 2;Note=Similar to Farnesyl diphosphate synthase (Fragment).;Transcript_evidence=AK100273 (DDBJ%2C Best hit);ORF_evidence=NP_001105039.1 (RefSeq);GO=Biological Process: isoprenoid biosynthetic process (GO:0008299);InterPro=Polyprenyl synthetase (IPR000092),Terpenoid synthase (IPR008949);NIAS_FLcDNA=J023072A14;Oryzabase=11199;Expression=AK100273;TENOR=Os05t0543400-02;KEGG=Os05t0543400-02 (EC:2.5.1.1%2C EC:2.5.1.10)
Chr05	irgsp1_rep	five_prime_UTR	26969619	26969821	.	-	.	Parent=Os05t0543400-02
Chr05	irgsp1_rep	CDS	26969469	26969618	.	-	0	Parent=Os05t0543400-02
Chr05	irgsp1_rep	CDS	26968819	26968843	.	-	0	Parent=Os05t0543400-02
Chr05	irgsp1_rep	CDS	26968613	26968728	.	-	2	Parent=Os05t0543400-02
Chr05	irgsp1_rep	CDS	26968443	26968529	.	-	0	Parent=Os05t0543400-02
Chr05	irgsp1_rep	CDS	26968180	26968296	.	-	0	Parent=Os05t0543400-02
Chr05	irgsp1_rep	CDS	26968001	26968089	.	-	0	Parent=Os05t0543400-02
Chr05	irgsp1_rep	CDS	26967772	26967823	.	-	1	Parent=Os05t0543400-02
Chr05	irgsp1_rep	CDS	26967577	26967672	.	-	0	Parent=Os05t0543400-02
Chr05	irgsp1_rep	CDS	26967441	26967485	.	-	0	Parent=Os05t0543400-02
Chr05	irgsp1_rep	CDS	26967249	26967338	.	-	0	Parent=Os05t0543400-02
Chr05	irgsp1_rep	CDS	26967107	26967178	.	-	0	Parent=Os05t0543400-02
Chr05	irgsp1_rep	CDS	26966752	26966880	.	-	0	Parent=Os05t0543400-02
Chr05	irgsp1_rep	three_prime_UTR	26966573	26966751	.	-	.	Parent=Os05t0543400-02
Chr05	irgsp1_rep	mRNA	26987460	26989035	.	+	.	ID=Os05t0543600-01;Name=Os05t0543600-01;Locus_id=Os05g0543600;Oryzabase Gene Symbol Synonym(s)=OsMYB86-L2;Note=Similar to Myb-related protein.;Transcript_evidence=AK287469 (DDBJ%2C Best hit);ORF_evidence=Q2AAT5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J043021L20;Oryzabase=19909;TENOR=Os05t0543600-01;KEGG=Os05t0543600-01
Chr05	irgsp1_rep	five_prime_UTR	26987460	26987625	.	+	.	Parent=Os05t0543600-01
Chr05	irgsp1_rep	CDS	26987626	26987760	.	+	0	Parent=Os05t0543600-01
Chr05	irgsp1_rep	CDS	26987877	26988010	.	+	0	Parent=Os05t0543600-01
Chr05	irgsp1_rep	CDS	26988136	26988805	.	+	1	Parent=Os05t0543600-01
Chr05	irgsp1_rep	three_prime_UTR	26988806	26989035	.	+	.	Parent=Os05t0543600-01
Chr05	irgsp1_rep	mRNA	26991243	26994930	.	-	.	ID=Os05t0543700-01;Name=Os05t0543700-01;Locus_id=Os05g0543700;Oryzabase Gene Symbol Synonym(s)=OsDjC51;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C51;Note=Similar to Chaperone protein dnaJ.;Transcript_evidence=AK071113 (DDBJ%2C Best hit);ORF_evidence=B6T7D7 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=J023077E11;Oryzabase=12208;TENOR=Os05t0543700-01
Chr05	irgsp1_rep	five_prime_UTR	26994823	26994930	.	-	.	Parent=Os05t0543700-01
Chr05	irgsp1_rep	five_prime_UTR	26994698	26994732	.	-	.	Parent=Os05t0543700-01
Chr05	irgsp1_rep	CDS	26994611	26994697	.	-	0	Parent=Os05t0543700-01
Chr05	irgsp1_rep	CDS	26994397	26994456	.	-	0	Parent=Os05t0543700-01
Chr05	irgsp1_rep	CDS	26993819	26993901	.	-	0	Parent=Os05t0543700-01
Chr05	irgsp1_rep	CDS	26993239	26993401	.	-	1	Parent=Os05t0543700-01
Chr05	irgsp1_rep	CDS	26992991	26993120	.	-	0	Parent=Os05t0543700-01
Chr05	irgsp1_rep	CDS	26992572	26992730	.	-	2	Parent=Os05t0543700-01
Chr05	irgsp1_rep	CDS	26992322	26992494	.	-	2	Parent=Os05t0543700-01
Chr05	irgsp1_rep	CDS	26992116	26992196	.	-	0	Parent=Os05t0543700-01
Chr05	irgsp1_rep	CDS	26991515	26991595	.	-	0	Parent=Os05t0543700-01
Chr05	irgsp1_rep	three_prime_UTR	26991243	26991514	.	-	.	Parent=Os05t0543700-01
Chr05	irgsp1_rep	mRNA	26991243	26994888	.	-	.	ID=Os05t0543700-02;Name=Os05t0543700-02;Locus_id=Os05g0543700;Oryzabase Gene Symbol Synonym(s)=OsDjC51;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C51;Note=Similar to Chaperone protein dnaJ.;Transcript_evidence=AK103912 (DDBJ%2C Best hit);ORF_evidence=B6T7D7 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=001-010-C07;Oryzabase=12208;TENOR=Os05t0543700-02
Chr05	irgsp1_rep	five_prime_UTR	26994823	26994888	.	-	.	Parent=Os05t0543700-02
Chr05	irgsp1_rep	five_prime_UTR	26994698	26994732	.	-	.	Parent=Os05t0543700-02
Chr05	irgsp1_rep	CDS	26994611	26994697	.	-	0	Parent=Os05t0543700-02
Chr05	irgsp1_rep	CDS	26994397	26994456	.	-	0	Parent=Os05t0543700-02
Chr05	irgsp1_rep	CDS	26993819	26993901	.	-	0	Parent=Os05t0543700-02
Chr05	irgsp1_rep	CDS	26993239	26993401	.	-	1	Parent=Os05t0543700-02
Chr05	irgsp1_rep	CDS	26992991	26993120	.	-	0	Parent=Os05t0543700-02
Chr05	irgsp1_rep	CDS	26992572	26992730	.	-	2	Parent=Os05t0543700-02
Chr05	irgsp1_rep	CDS	26992322	26992494	.	-	2	Parent=Os05t0543700-02
Chr05	irgsp1_rep	CDS	26992116	26992196	.	-	0	Parent=Os05t0543700-02
Chr05	irgsp1_rep	CDS	26991515	26991595	.	-	0	Parent=Os05t0543700-02
Chr05	irgsp1_rep	three_prime_UTR	26991243	26991514	.	-	.	Parent=Os05t0543700-02
Chr05	irgsp1_rep	mRNA	26995745	26999172	.	-	.	ID=Os05t0543800-01;Name=Os05t0543800-01;Locus_id=Os05g0543800;Note=Protein of unknown function DUF3615 domain containing protein.;Transcript_evidence=AK072185 (DDBJ%2C Best hit);ORF_evidence=B9FLF3 (UniProt);InterPro=Protein of unknown function DUF3615 (IPR022059);NIAS_FLcDNA=J013140A01;Expression=AK072185;TENOR=Os05t0543800-01;KEGG=Os05t0543800-01
Chr05	irgsp1_rep	five_prime_UTR	26998845	26999172	.	-	.	Parent=Os05t0543800-01
Chr05	irgsp1_rep	five_prime_UTR	26998440	26998488	.	-	.	Parent=Os05t0543800-01
Chr05	irgsp1_rep	CDS	26998195	26998439	.	-	0	Parent=Os05t0543800-01
Chr05	irgsp1_rep	CDS	26998032	26998112	.	-	1	Parent=Os05t0543800-01
Chr05	irgsp1_rep	CDS	26997569	26997634	.	-	1	Parent=Os05t0543800-01
Chr05	irgsp1_rep	CDS	26996948	26997185	.	-	1	Parent=Os05t0543800-01
Chr05	irgsp1_rep	CDS	26996146	26996338	.	-	0	Parent=Os05t0543800-01
Chr05	irgsp1_rep	CDS	26995895	26996067	.	-	2	Parent=Os05t0543800-01
Chr05	irgsp1_rep	three_prime_UTR	26995745	26995894	.	-	.	Parent=Os05t0543800-01
Chr05	irgsp1_rep	mRNA	26995741	26999172	.	-	.	ID=Os05t0543800-02;Name=Os05t0543800-02;Locus_id=Os05g0543800;Note=Hypothetical conserved gene.;Transcript_evidence=AK102850 (DDBJ%2C Best hit);ORF_evidence=B9FLF3 (UniProt);NIAS_FLcDNA=J033110D02;Expression=AK102850;TENOR=Os05t0543800-02;KEGG=Os05t0543800-02
Chr05	irgsp1_rep	five_prime_UTR	26998845	26999172	.	-	.	Parent=Os05t0543800-02
Chr05	irgsp1_rep	five_prime_UTR	26998440	26998488	.	-	.	Parent=Os05t0543800-02
Chr05	irgsp1_rep	CDS	26998195	26998439	.	-	0	Parent=Os05t0543800-02
Chr05	irgsp1_rep	CDS	26997944	26998112	.	-	1	Parent=Os05t0543800-02
Chr05	irgsp1_rep	three_prime_UTR	26997569	26997943	.	-	.	Parent=Os05t0543800-02
Chr05	irgsp1_rep	three_prime_UTR	26996948	26997185	.	-	.	Parent=Os05t0543800-02
Chr05	irgsp1_rep	three_prime_UTR	26996146	26996303	.	-	.	Parent=Os05t0543800-02
Chr05	irgsp1_rep	three_prime_UTR	26995741	26996067	.	-	.	Parent=Os05t0543800-02
Chr05	irgsp1_rep	mRNA	27024974	27027058	.	-	.	ID=Os05t0544600-00;Name=Os05t0544600-00;Locus_id=Os05g0544600;Note=Hypothetical conserved gene.;Transcript_evidence=EU945087 (DDBJ);ORF_evidence=Q9XEM3 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);TENOR=Os05t0544600-00;KEGG=Os05t0544600-00
Chr05	irgsp1_rep	CDS	27024974	27027058	.	-	0	Parent=Os05t0544600-00
Chr05	irgsp1_rep	mRNA	27025088	27027085	.	+	.	ID=Os05t0544750-00;Name=Os05t0544750-00;Locus_id=Os05g0544750;Note=Hypothetical protein.;Transcript_evidence=tplb0052d04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0544750-00
Chr05	irgsp1_rep	five_prime_UTR	27025088	27025289	.	+	.	Parent=Os05t0544750-00
Chr05	irgsp1_rep	CDS	27025290	27025529	.	+	0	Parent=Os05t0544750-00
Chr05	irgsp1_rep	three_prime_UTR	27025530	27027085	.	+	.	Parent=Os05t0544750-00
Chr05	irgsp1_rep	mRNA	27036923	27038975	.	-	.	ID=Os05t0544900-01;Name=Os05t0544900-01;Locus_id=Os05g0544900;Note=Protein of unknown function DUF3615 domain containing protein.;Transcript_evidence=AK109267 (DDBJ%2C Best hit);ORF_evidence=B9FLF4 (UniProt);InterPro=Protein of unknown function DUF3615 (IPR022059);NIAS_FLcDNA=002-188-A01;TENOR=Os05t0544900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	27038656	27038975	.	-	0	Parent=Os05t0544900-01
Chr05	irgsp1_rep	CDS	27037645	27037861	.	-	1	Parent=Os05t0544900-01
Chr05	irgsp1_rep	CDS	27037281	27037473	.	-	0	Parent=Os05t0544900-01
Chr05	irgsp1_rep	CDS	27037023	27037186	.	-	2	Parent=Os05t0544900-01
Chr05	irgsp1_rep	three_prime_UTR	27036923	27037022	.	-	.	Parent=Os05t0544900-01
Chr05	irgsp1_rep	mRNA	27043471	27048544	.	+	.	ID=Os05t0545000-01;Name=Os05t0545000-01;Locus_id=Os05g0545000;Oryzabase Gene Symbol Synonym(s)=OsSNDP6%2C SNDP6;Oryzabase Gene Name Synonym(s)=Sec14-nodulin domain-containing protein 6%2C Sec14-nodulin domain protein 6;Note=Similar to Phosphatidylinositol transfer-like protein IV.;Transcript_evidence=AK066240 (DDBJ%2C Best hit);ORF_evidence=Q94FN1 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: intracellular (GO:0005622),Molecular Function: transporter activity (GO:0005215);InterPro=Cellular retinaldehyde binding/alpha-tocopherol transport (IPR001071),Cellular retinaldehyde-binding/triple function%2C C-terminal (IPR001251),Cellular retinaldehyde-binding/triple function%2C N-terminal (IPR008273),Phosphatidylinositol transfer protein-like%2C N-terminal (IPR011074);NIAS_FLcDNA=J013052B04;Oryzabase=12290;Expression=AK066240;TENOR=Os05t0545000-01;KEGG=Os05t0545000-01
Chr05	irgsp1_rep	five_prime_UTR	27043471	27043630	.	+	.	Parent=Os05t0545000-01
Chr05	irgsp1_rep	CDS	27043631	27043664	.	+	0	Parent=Os05t0545000-01
Chr05	irgsp1_rep	CDS	27044486	27044777	.	+	2	Parent=Os05t0545000-01
Chr05	irgsp1_rep	CDS	27045095	27045191	.	+	1	Parent=Os05t0545000-01
Chr05	irgsp1_rep	CDS	27045270	27045536	.	+	0	Parent=Os05t0545000-01
Chr05	irgsp1_rep	CDS	27045624	27045701	.	+	0	Parent=Os05t0545000-01
Chr05	irgsp1_rep	CDS	27045811	27045912	.	+	0	Parent=Os05t0545000-01
Chr05	irgsp1_rep	CDS	27046043	27046092	.	+	0	Parent=Os05t0545000-01
Chr05	irgsp1_rep	CDS	27046175	27046274	.	+	1	Parent=Os05t0545000-01
Chr05	irgsp1_rep	CDS	27046437	27046535	.	+	0	Parent=Os05t0545000-01
Chr05	irgsp1_rep	CDS	27046632	27046743	.	+	0	Parent=Os05t0545000-01
Chr05	irgsp1_rep	CDS	27047109	27047219	.	+	2	Parent=Os05t0545000-01
Chr05	irgsp1_rep	CDS	27047444	27047847	.	+	2	Parent=Os05t0545000-01
Chr05	irgsp1_rep	CDS	27047998	27048072	.	+	0	Parent=Os05t0545000-01
Chr05	irgsp1_rep	CDS	27048165	27048185	.	+	0	Parent=Os05t0545000-01
Chr05	irgsp1_rep	three_prime_UTR	27048186	27048544	.	+	.	Parent=Os05t0545000-01
Chr05	irgsp1_rep	mRNA	27045376	27048544	.	+	.	ID=Os05t0545000-02;Name=Os05t0545000-02;Locus_id=Os05g0545000;Oryzabase Gene Symbol Synonym(s)=OsSNDP6%2C SNDP6;Oryzabase Gene Name Synonym(s)=Sec14-nodulin domain-containing protein 6%2C Sec14-nodulin domain protein 6;Note=Similar to Phosphatidylinositol transfer-like protein III.;Transcript_evidence=AK061952 (DDBJ%2C Best hit);ORF_evidence=Q94FN1 (UniProt);InterPro=Cellular retinaldehyde-binding/triple function%2C C-terminal (IPR001251);NIAS_FLcDNA=001-042-F02;Oryzabase=12290;Expression=AK061952;TENOR=Os05t0545000-02;KEGG=Os05t0545000-02
Chr05	irgsp1_rep	five_prime_UTR	27045376	27045377	.	+	.	Parent=Os05t0545000-02
Chr05	irgsp1_rep	CDS	27045378	27045536	.	+	0	Parent=Os05t0545000-02
Chr05	irgsp1_rep	CDS	27045624	27045701	.	+	0	Parent=Os05t0545000-02
Chr05	irgsp1_rep	CDS	27045811	27045912	.	+	0	Parent=Os05t0545000-02
Chr05	irgsp1_rep	CDS	27046043	27046092	.	+	0	Parent=Os05t0545000-02
Chr05	irgsp1_rep	CDS	27046175	27046274	.	+	1	Parent=Os05t0545000-02
Chr05	irgsp1_rep	CDS	27046437	27046535	.	+	0	Parent=Os05t0545000-02
Chr05	irgsp1_rep	CDS	27046632	27046743	.	+	0	Parent=Os05t0545000-02
Chr05	irgsp1_rep	CDS	27047109	27047219	.	+	2	Parent=Os05t0545000-02
Chr05	irgsp1_rep	CDS	27047444	27047847	.	+	2	Parent=Os05t0545000-02
Chr05	irgsp1_rep	CDS	27047998	27048072	.	+	0	Parent=Os05t0545000-02
Chr05	irgsp1_rep	CDS	27048165	27048185	.	+	0	Parent=Os05t0545000-02
Chr05	irgsp1_rep	three_prime_UTR	27048186	27048544	.	+	.	Parent=Os05t0545000-02
Chr05	irgsp1_rep	mRNA	27057869	27062828	.	-	.	ID=Os05t0545200-00;Name=Os05t0545200-00;Locus_id=Os05g0545200;Note=Similar to zinc ion binding.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001154232.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C FYVE-type (IPR000306),Regulator of Chromosome condensation%2C RCC1 (IPR000408),Pleckstrin homology domain (IPR001849),Regulator of Chromosome condensation/beta-lactamase-inhibitor protein II (IPR009091),Zinc finger%2C FYVE/PHD-type (IPR011011),Pleckstrin homology-type (IPR011993),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Brevis radix-like domain (IPR013591),Zinc finger%2C FYVE-related (IPR017455);TENOR=Os05t0545200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	27062781	27062828	.	-	0	Parent=Os05t0545200-00
Chr05	irgsp1_rep	CDS	27062142	27062231	.	-	0	Parent=Os05t0545200-00
Chr05	irgsp1_rep	CDS	27061799	27061885	.	-	0	Parent=Os05t0545200-00
Chr05	irgsp1_rep	CDS	27061584	27061700	.	-	0	Parent=Os05t0545200-00
Chr05	irgsp1_rep	CDS	27059144	27061207	.	-	0	Parent=Os05t0545200-00
Chr05	irgsp1_rep	CDS	27058917	27059063	.	-	0	Parent=Os05t0545200-00
Chr05	irgsp1_rep	CDS	27058225	27058625	.	-	0	Parent=Os05t0545200-00
Chr05	irgsp1_rep	CDS	27057869	27057959	.	-	1	Parent=Os05t0545200-00
Chr05	irgsp1_rep	mRNA	27068628	27070015	.	-	.	ID=Os05t0545300-01;Name=Os05t0545300-01;Locus_id=Os05g0545300;Oryzabase Gene Name Synonym(s)=Serine/threonine protein kinase domain containing protein;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK109702 (DDBJ%2C Best hit);ORF_evidence=B8QUI9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=002-145-F08;Oryzabase=20471;TENOR=Os05t0545300-01
Chr05	irgsp1_rep	five_prime_UTR	27069950	27070015	.	-	.	Parent=Os05t0545300-01
Chr05	irgsp1_rep	CDS	27068628	27069949	.	-	0	Parent=Os05t0545300-01
Chr05	irgsp1_rep	mRNA	27075999	27077365	.	-	.	ID=Os05t0545400-01;Name=Os05t0545400-01;Locus_id=Os05g0545400;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK105946 (DDBJ%2C Best hit);ORF_evidence=B8QUI8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-205-C05;TENOR=Os05t0545400-01
Chr05	irgsp1_rep	five_prime_UTR	27077273	27077365	.	-	.	Parent=Os05t0545400-01
Chr05	irgsp1_rep	CDS	27075999	27077272	.	-	0	Parent=Os05t0545400-01
Chr05	irgsp1_rep	mRNA	27093837	27098696	.	+	.	ID=Os05t0545600-00;Name=Os05t0545600-00;Locus_id=Os05g0545600;Note=Forkhead-associated (FHA) domain domain containing protein.;Transcript_evidence=AK353767 (DDBJ);ORF_evidence=B9FLF8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Forkhead-associated (FHA) domain (IPR000253),SMAD/FHA domain (IPR008984);TENOR=Os05t0545600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	27093837	27094030	.	+	0	Parent=Os05t0545600-00
Chr05	irgsp1_rep	CDS	27094088	27094733	.	+	1	Parent=Os05t0545600-00
Chr05	irgsp1_rep	CDS	27095336	27095367	.	+	0	Parent=Os05t0545600-00
Chr05	irgsp1_rep	CDS	27095654	27095720	.	+	1	Parent=Os05t0545600-00
Chr05	irgsp1_rep	CDS	27095908	27095965	.	+	0	Parent=Os05t0545600-00
Chr05	irgsp1_rep	CDS	27096121	27096213	.	+	2	Parent=Os05t0545600-00
Chr05	irgsp1_rep	CDS	27097158	27097272	.	+	2	Parent=Os05t0545600-00
Chr05	irgsp1_rep	CDS	27097639	27097686	.	+	1	Parent=Os05t0545600-00
Chr05	irgsp1_rep	CDS	27097804	27097849	.	+	1	Parent=Os05t0545600-00
Chr05	irgsp1_rep	CDS	27097953	27098023	.	+	0	Parent=Os05t0545600-00
Chr05	irgsp1_rep	CDS	27098657	27098696	.	+	1	Parent=Os05t0545600-00
Chr05	irgsp1_rep	mRNA	27103789	27105687	.	+	.	ID=Os05t0545900-00;Name=Os05t0545900-00;Locus_id=Os05g0545900;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FHL0 (UniProt);InterPro=Protein of unknown function DUF3615 (IPR022059);TENOR=Os05t0545900-00;KEGG=Os05t0545900-00
Chr05	irgsp1_rep	CDS	27103789	27104249	.	+	0	Parent=Os05t0545900-00
Chr05	irgsp1_rep	CDS	27104892	27104943	.	+	1	Parent=Os05t0545900-00
Chr05	irgsp1_rep	CDS	27105102	27105378	.	+	0	Parent=Os05t0545900-00
Chr05	irgsp1_rep	CDS	27105527	27105687	.	+	2	Parent=Os05t0545900-00
Chr05	irgsp1_rep	mRNA	27119121	27120202	.	+	.	ID=Os05t0546300-01;Name=Os05t0546300-01;Locus_id=Os05g0546300;Note=Hypothetical protein.;Transcript_evidence=AK108536 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=002-144-C08;TENOR=Os05t0546300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	27119121	27119186	.	+	.	Parent=Os05t0546300-01
Chr05	irgsp1_rep	CDS	27119187	27119891	.	+	0	Parent=Os05t0546300-01
Chr05	irgsp1_rep	three_prime_UTR	27119892	27120202	.	+	.	Parent=Os05t0546300-01
Chr05	irgsp1_rep	mRNA	27121983	27122900	.	+	.	ID=Os05t0546400-01;Name=Os05t0546400-01;Locus_id=Os05g0546400;Note=Hypothetical protein.;Transcript_evidence=AK109087 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=002-154-H11;Expression=AK109087;TENOR=Os05t0546400-01;KEGG=Os05t0546400-01
Chr05	irgsp1_rep	five_prime_UTR	27121983	27122040	.	+	.	Parent=Os05t0546400-01
Chr05	irgsp1_rep	CDS	27122041	27122673	.	+	0	Parent=Os05t0546400-01
Chr05	irgsp1_rep	three_prime_UTR	27122674	27122900	.	+	.	Parent=Os05t0546400-01
Chr05	irgsp1_rep	mRNA	27124468	27125316	.	-	.	ID=Os05t0546500-00;Name=Os05t0546500-00;Locus_id=Os05g0546500;Note=Similar to Cell death-related protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6ITC5 (UniProt);GO=Molecular Function: DNA binding (GO:0003677);InterPro=DNA-binding TFAR19-related protein (IPR002836);TENOR=Os05t0546500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	27125292	27125316	.	-	0	Parent=Os05t0546500-00
Chr05	irgsp1_rep	CDS	27124952	27125043	.	-	2	Parent=Os05t0546500-00
Chr05	irgsp1_rep	CDS	27124779	27124850	.	-	0	Parent=Os05t0546500-00
Chr05	irgsp1_rep	CDS	27124468	27124506	.	-	0	Parent=Os05t0546500-00
Chr05	irgsp1_rep	mRNA	27125929	27130076	.	+	.	ID=Os05t0546700-01;Name=Os05t0546700-01;Locus_id=Os05g0546700;Note=Similar to Transcription factor (Fragment).;Transcript_evidence=AK288622 (DDBJ%2C Best hit);ORF_evidence=D6MK23 (UniProt);NIAS_FLcDNA=J090054F13;TENOR=Os05t0546700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	27125929	27126020	.	+	.	Parent=Os05t0546700-01
Chr05	irgsp1_rep	CDS	27126021	27126233	.	+	0	Parent=Os05t0546700-01
Chr05	irgsp1_rep	three_prime_UTR	27126234	27130076	.	+	.	Parent=Os05t0546700-01
Chr05	irgsp1_rep	mRNA	27139105	27142103	.	+	.	ID=Os05t0546800-01;Name=Os05t0546800-01;Locus_id=Os05g0546800;Note=Protein of unknown function DUF3615 domain containing protein.;Transcript_evidence=AK067522 (DDBJ%2C Best hit);ORF_evidence=A2Y742 (UniProt);InterPro=Protein of unknown function DUF3615 (IPR022059);NIAS_FLcDNA=J013111O17;Expression=AK067522;TENOR=Os05t0546800-01;KEGG=Os05t0546800-01
Chr05	irgsp1_rep	five_prime_UTR	27139105	27139186	.	+	.	Parent=Os05t0546800-01
Chr05	irgsp1_rep	CDS	27139187	27139947	.	+	0	Parent=Os05t0546800-01
Chr05	irgsp1_rep	CDS	27141079	27141199	.	+	1	Parent=Os05t0546800-01
Chr05	irgsp1_rep	CDS	27141288	27141564	.	+	0	Parent=Os05t0546800-01
Chr05	irgsp1_rep	CDS	27141726	27141886	.	+	2	Parent=Os05t0546800-01
Chr05	irgsp1_rep	three_prime_UTR	27141887	27142103	.	+	.	Parent=Os05t0546800-01
Chr05	irgsp1_rep	mRNA	27150614	27153702	.	+	.	ID=Os05t0547100-01;Name=Os05t0547100-01;Locus_id=Os05g0547100;Note=Conserved hypothetical protein.;Transcript_evidence=AK121657 (DDBJ%2C Best hit);ORF_evidence=Q6L5A0 (UniProt);NIAS_FLcDNA=J033063G18;Expression=AK121657;TENOR=Os05t0547100-01;KEGG=Os05t0547100-01
Chr05	irgsp1_rep	five_prime_UTR	27150614	27151535	.	+	.	Parent=Os05t0547100-01
Chr05	irgsp1_rep	CDS	27151536	27151793	.	+	0	Parent=Os05t0547100-01
Chr05	irgsp1_rep	CDS	27151882	27152018	.	+	0	Parent=Os05t0547100-01
Chr05	irgsp1_rep	CDS	27152142	27152184	.	+	1	Parent=Os05t0547100-01
Chr05	irgsp1_rep	three_prime_UTR	27152185	27152247	.	+	.	Parent=Os05t0547100-01
Chr05	irgsp1_rep	three_prime_UTR	27153165	27153702	.	+	.	Parent=Os05t0547100-01
Chr05	irgsp1_rep	mRNA	27156356	27160936	.	+	.	ID=Os05t0547200-00;Name=Os05t0547200-00;Locus_id=Os05g0547200;Note=Conserved hypothetical protein.;Transcript_evidence=AK375772 (DDBJ);ORF_evidence=NP_001047613.2 (RefSeq);TENOR=Os05t0547200-00
Chr05	irgsp1_rep	five_prime_UTR	27156356	27156608	.	+	.	Parent=Os05t0547200-00
Chr05	irgsp1_rep	CDS	27156609	27156860	.	+	0	Parent=Os05t0547200-00
Chr05	irgsp1_rep	three_prime_UTR	27156861	27157028	.	+	.	Parent=Os05t0547200-00
Chr05	irgsp1_rep	three_prime_UTR	27157128	27157402	.	+	.	Parent=Os05t0547200-00
Chr05	irgsp1_rep	three_prime_UTR	27160702	27160936	.	+	.	Parent=Os05t0547200-00
Chr05	irgsp1_rep	mRNA	27163275	27166806	.	-	.	ID=Os05t0547600-01;Name=Os05t0547600-01;Locus_id=Os05g0547600;Note=Hypothetical protein.;Transcript_evidence=AK102181 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033086M06;Expression=AK102181;TENOR=Os05t0547600-01;KEGG=Os05t0547600-01
Chr05	irgsp1_rep	five_prime_UTR	27166673	27166806	.	-	.	Parent=Os05t0547600-01
Chr05	irgsp1_rep	five_prime_UTR	27165797	27165833	.	-	.	Parent=Os05t0547600-01
Chr05	irgsp1_rep	CDS	27165759	27165796	.	-	0	Parent=Os05t0547600-01
Chr05	irgsp1_rep	CDS	27165214	27165382	.	-	1	Parent=Os05t0547600-01
Chr05	irgsp1_rep	CDS	27164770	27164965	.	-	0	Parent=Os05t0547600-01
Chr05	irgsp1_rep	CDS	27164260	27164387	.	-	2	Parent=Os05t0547600-01
Chr05	irgsp1_rep	CDS	27163632	27163673	.	-	0	Parent=Os05t0547600-01
Chr05	irgsp1_rep	three_prime_UTR	27163275	27163631	.	-	.	Parent=Os05t0547600-01
Chr05	irgsp1_rep	mRNA	27168591	27171319	.	+	.	ID=Os05t0547700-01;Name=Os05t0547700-01;Locus_id=Os05g0547700;Note=Conserved hypothetical protein.;Transcript_evidence=AK070926 (DDBJ%2C Best hit);ORF_evidence=B9G5C2 (UniProt);NIAS_FLcDNA=J023073P19;Expression=AK070926;TENOR=Os05t0547700-01;KEGG=Os05t0547700-01
Chr05	irgsp1_rep	five_prime_UTR	27168591	27170133	.	+	.	Parent=Os05t0547700-01
Chr05	irgsp1_rep	CDS	27170134	27170343	.	+	0	Parent=Os05t0547700-01
Chr05	irgsp1_rep	three_prime_UTR	27170344	27171319	.	+	.	Parent=Os05t0547700-01
Chr05	irgsp1_rep	mRNA	27168614	27171366	.	+	.	ID=Os05t0547700-02;Name=Os05t0547700-02;Locus_id=Os05g0547700;Note=Conserved hypothetical protein.;Transcript_evidence=AK120320 (DDBJ%2C Best hit);ORF_evidence=B9G5C2 (UniProt);NIAS_FLcDNA=J013056P07;Expression=AK120320;TENOR=Os05t0547700-02;KEGG=Os05t0547700-02
Chr05	irgsp1_rep	five_prime_UTR	27168614	27170133	.	+	.	Parent=Os05t0547700-02
Chr05	irgsp1_rep	CDS	27170134	27170343	.	+	0	Parent=Os05t0547700-02
Chr05	irgsp1_rep	three_prime_UTR	27170344	27171366	.	+	.	Parent=Os05t0547700-02
Chr05	irgsp1_rep	mRNA	27178016	27178615	.	-	.	ID=Os05t0547800-01;Name=Os05t0547800-01;Locus_id=Os05g0547800;Note=Conserved hypothetical protein.;Transcript_evidence=AK073272 (DDBJ%2C Best hit);ORF_evidence=NP_001175054.1 (RefSeq);NIAS_FLcDNA=J033029C12;TENOR=Os05t0547800-01;KEGG=Os05t0547800-01
Chr05	irgsp1_rep	five_prime_UTR	27178387	27178615	.	-	.	Parent=Os05t0547800-01
Chr05	irgsp1_rep	CDS	27178078	27178386	.	-	0	Parent=Os05t0547800-01
Chr05	irgsp1_rep	three_prime_UTR	27178016	27178077	.	-	.	Parent=Os05t0547800-01
Chr05	irgsp1_rep	mRNA	27179621	27183774	.	-	.	ID=Os05t0547850-01;Name=Os05t0547850-01;Locus_id=Os05g0547850;Oryzabase Gene Symbol Synonym(s)=OsPDCD5%2C PDCD5;Oryzabase Gene Name Synonym(s)=programmed cell death 5;Note=DNA-binding TFAR19-related protein family protein.;Transcript_evidence=AK122158 (DDBJ%2C Best hit),AK058330 (DDBJ%2C Best hit);ORF_evidence=Q7XJ37 (UniProt);GO=Molecular Function: DNA binding (GO:0003677);InterPro=DNA-binding TFAR19-related protein (IPR002836);NIAS_FLcDNA=J033147B11,001-014-C06;Oryzabase=11211;TENOR=Os05t0547850-01
Chr05	irgsp1_rep	five_prime_UTR	27183677	27183774	.	-	.	Parent=Os05t0547850-01
Chr05	irgsp1_rep	CDS	27183674	27183676	.	-	0	Parent=Os05t0547850-01
Chr05	irgsp1_rep	CDS	27181402	27181467	.	-	0	Parent=Os05t0547850-01
Chr05	irgsp1_rep	CDS	27181264	27181313	.	-	0	Parent=Os05t0547850-01
Chr05	irgsp1_rep	CDS	27181086	27181150	.	-	1	Parent=Os05t0547850-01
Chr05	irgsp1_rep	CDS	27180270	27180361	.	-	2	Parent=Os05t0547850-01
Chr05	irgsp1_rep	CDS	27180110	27180181	.	-	0	Parent=Os05t0547850-01
Chr05	irgsp1_rep	CDS	27179799	27179837	.	-	0	Parent=Os05t0547850-01
Chr05	irgsp1_rep	three_prime_UTR	27179621	27179798	.	-	.	Parent=Os05t0547850-01
Chr05	irgsp1_rep	mRNA	27198354	27199393	.	+	.	ID=Os05t0548100-02;Name=Os05t0548100-02;Locus_id=Os05g0548100;Note=Similar to VIP1 protein.;Transcript_evidence=AK060333 (DDBJ%2C Best hit),AK100682 (DDBJ%2C Best hit);ORF_evidence=B6TE87 (UniProt);NIAS_FLcDNA=001-008-B08,J023113L22;Expression=AK060333;TENOR=Os05t0548100-02;KEGG=Os05t0548100-02
Chr05	irgsp1_rep	five_prime_UTR	27198354	27198409	.	+	.	Parent=Os05t0548100-02
Chr05	irgsp1_rep	CDS	27198410	27199045	.	+	0	Parent=Os05t0548100-02
Chr05	irgsp1_rep	three_prime_UTR	27199046	27199393	.	+	.	Parent=Os05t0548100-02
Chr05	irgsp1_rep	mRNA	27201104	27202593	.	-	.	ID=Os05t0548200-01;Name=Os05t0548200-01;Locus_id=Os05g0548200;Note=Similar to Transcription initiation factor IIB (General transcription factor TFIIB).;Transcript_evidence=AK107525 (DDBJ%2C Best hit);ORF_evidence=NP_001149721.1 (RefSeq);GO=Biological Process: transcription initiation%2C DNA-dependent (GO:0006352),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: translational initiation (GO:0006413),Molecular Function: translation initiation factor activity (GO:0003743),Molecular Function: zinc ion binding (GO:0008270);InterPro=Transcription factor TFIIB (IPR000812),Zinc finger%2C TFIIB-type (IPR013137),Transcription factor TFIIB%2C cyclin-related (IPR013150),Cyclin-like (IPR013763),Transcription factor TFIIB%2C conserved site (IPR023486);NIAS_FLcDNA=002-129-G01;Expression=AK107525;TENOR=Os05t0548200-01;KEGG=Os05t0548200-01
Chr05	irgsp1_rep	five_prime_UTR	27202487	27202593	.	-	.	Parent=Os05t0548200-01
Chr05	irgsp1_rep	CDS	27201536	27202486	.	-	0	Parent=Os05t0548200-01
Chr05	irgsp1_rep	three_prime_UTR	27201104	27201535	.	-	.	Parent=Os05t0548200-01
Chr05	irgsp1_rep	mRNA	27207752	27210015	.	+	.	ID=Os05t0548300-01;Name=Os05t0548300-01;Locus_id=Os05g0548300;CGSNL Gene Symbol=ABCB18;CGSNL Gene Name=ABC TRANSPORTER B FAMILY MEMBER 18;Oryzabase Gene Symbol Synonym(s)=OsABCB18%2C OsPGP18%2C OsABCB18_1%2C OsABCB18_2;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCB subgroup member 18%2C P-Glycoprotein 18;Note=ABC transporter%2C transmembrane domain domain containing protein.;Transcript_evidence=AK109784 (DDBJ%2C Best hit);ORF_evidence=B9FLG1 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);NIAS_FLcDNA=002-147-C09;Oryzabase=11937;TENOR=Os05t0548300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	27207752	27207753	.	+	.	Parent=Os05t0548300-01
Chr05	irgsp1_rep	CDS	27207754	27208073	.	+	0	Parent=Os05t0548300-01
Chr05	irgsp1_rep	CDS	27208171	27208399	.	+	1	Parent=Os05t0548300-01
Chr05	irgsp1_rep	CDS	27208504	27208770	.	+	0	Parent=Os05t0548300-01
Chr05	irgsp1_rep	CDS	27208843	27209106	.	+	0	Parent=Os05t0548300-01
Chr05	irgsp1_rep	CDS	27209189	27209857	.	+	0	Parent=Os05t0548300-01
Chr05	irgsp1_rep	three_prime_UTR	27209858	27210015	.	+	.	Parent=Os05t0548300-01
Chr05	irgsp1_rep	mRNA	27210566	27218345	.	-	.	ID=Os05t0548400-01;Name=Os05t0548400-01;Locus_id=Os05g0548400;Note=Hypothetical protein.;Transcript_evidence=AK119291 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-130-D07;Expression=AK119291;TENOR=Os05t0548400-01;KEGG=Os05t0548400-01
Chr05	irgsp1_rep	five_prime_UTR	27218158	27218345	.	-	.	Parent=Os05t0548400-01
Chr05	irgsp1_rep	five_prime_UTR	27212015	27212238	.	-	.	Parent=Os05t0548400-01
Chr05	irgsp1_rep	five_prime_UTR	27211409	27211502	.	-	.	Parent=Os05t0548400-01
Chr05	irgsp1_rep	five_prime_UTR	27211047	27211282	.	-	.	Parent=Os05t0548400-01
Chr05	irgsp1_rep	CDS	27210624	27211046	.	-	0	Parent=Os05t0548400-01
Chr05	irgsp1_rep	three_prime_UTR	27210566	27210623	.	-	.	Parent=Os05t0548400-01
Chr05	irgsp1_rep	mRNA	27211900	27217567	.	+	.	ID=Os05t0548500-00;Name=Os05t0548500-00;Locus_id=Os05g0548500;CGSNL Gene Symbol=ABCB19;CGSNL Gene Name=ABC TRANSPORTER B FAMILY MEMBER 19;Oryzabase Gene Symbol Synonym(s)=OsABCB19%2C OsPGP19;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCB subgroup member 19%2C P-Glycoprotein 19;Note=Similar to MDR-like ABC transporter.;Transcript_evidence=AB055077 (DDBJ);ORF_evidence=Q7FMW3 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);Oryzabase=11938;TENOR=Os05t0548500-00;KEGG=Os05t0548500-00
Chr05	irgsp1_rep	five_prime_UTR	27211900	27211912	.	+	.	Parent=Os05t0548500-00
Chr05	irgsp1_rep	CDS	27211913	27212179	.	+	0	Parent=Os05t0548500-00
Chr05	irgsp1_rep	CDS	27212540	27212594	.	+	0	Parent=Os05t0548500-00
Chr05	irgsp1_rep	CDS	27212949	27213124	.	+	2	Parent=Os05t0548500-00
Chr05	irgsp1_rep	CDS	27213365	27213586	.	+	0	Parent=Os05t0548500-00
Chr05	irgsp1_rep	CDS	27213664	27213902	.	+	0	Parent=Os05t0548500-00
Chr05	irgsp1_rep	CDS	27214100	27214625	.	+	1	Parent=Os05t0548500-00
Chr05	irgsp1_rep	CDS	27214705	27214978	.	+	0	Parent=Os05t0548500-00
Chr05	irgsp1_rep	CDS	27215054	27215672	.	+	2	Parent=Os05t0548500-00
Chr05	irgsp1_rep	CDS	27215745	27215973	.	+	1	Parent=Os05t0548500-00
Chr05	irgsp1_rep	CDS	27216211	27216477	.	+	0	Parent=Os05t0548500-00
Chr05	irgsp1_rep	CDS	27216555	27216818	.	+	0	Parent=Os05t0548500-00
Chr05	irgsp1_rep	CDS	27216923	27217567	.	+	0	Parent=Os05t0548500-00
Chr05	irgsp1_rep	mRNA	27219015	27220348	.	+	.	ID=Os05t0548600-00;Name=Os05t0548600-00;Locus_id=Os05g0548600;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=BT085761 (DDBJ);ORF_evidence=Q94H87 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);TENOR=Os05t0548600-00;KEGG=Os05t0548600-00
Chr05	irgsp1_rep	CDS	27219015	27220337	.	+	0	Parent=Os05t0548600-00
Chr05	irgsp1_rep	three_prime_UTR	27220338	27220348	.	+	.	Parent=Os05t0548600-00
Chr05	irgsp1_rep	mRNA	27222701	27223664	.	-	.	ID=Os05t0548700-00;Name=Os05t0548700-00;Locus_id=Os05g0548700;Note=Protein of unknown function DUF1618 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001056229.2 (RefSeq);InterPro=Domain of unknown function DUF1618 (IPR011676);TENOR=Os05t0548700-00;KEGG=Os05t0548700-00
Chr05	irgsp1_rep	CDS	27223488	27223664	.	-	0	Parent=Os05t0548700-00
Chr05	irgsp1_rep	CDS	27222701	27223459	.	-	0	Parent=Os05t0548700-00
Chr05	irgsp1_rep	mRNA	27224856	27226126	.	-	.	ID=Os05t0548800-01;Name=Os05t0548800-01;Locus_id=Os05g0548800;Note=Acid phosphatase/vanadium-dependent haloperoxidase related family protein.;Transcript_evidence=AK062554 (DDBJ%2C Best hit);ORF_evidence=B6TT62 (UniProt);InterPro=Acid phosphatase/vanadium-dependent haloperoxidase-related (IPR003832);NIAS_FLcDNA=001-104-H06;Expression=AK062554;TENOR=Os05t0548800-01;KEGG=Os05t0548800-01
Chr05	irgsp1_rep	five_prime_UTR	27225637	27226126	.	-	.	Parent=Os05t0548800-01
Chr05	irgsp1_rep	CDS	27225565	27225636	.	-	0	Parent=Os05t0548800-01
Chr05	irgsp1_rep	CDS	27225378	27225473	.	-	0	Parent=Os05t0548800-01
Chr05	irgsp1_rep	CDS	27224918	27224977	.	-	0	Parent=Os05t0548800-01
Chr05	irgsp1_rep	three_prime_UTR	27224856	27224917	.	-	.	Parent=Os05t0548800-01
Chr05	irgsp1_rep	mRNA	27229414	27233659	.	-	.	ID=Os05t0548900-01;Name=Os05t0548900-01;Locus_id=Os05g0548900;Oryzabase Gene Symbol Synonym(s)=OsPEAMT2;Oryzabase Gene Name Synonym(s)=Phosphoethanolamine N-Methyltransferase 2;Note=Similar to Phosphoethanolamine methyltransferase.;Transcript_evidence=AK243200 (DDBJ%2C Best hit);ORF_evidence=Q8VYX1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Methyltransferase type 11 (IPR013216);NIAS_FLcDNA=J100040M09;Oryzabase=19063;TENOR=Os05t0548900-01;KEGG=Os05t0548900-01
Chr05	irgsp1_rep	five_prime_UTR	27233387	27233659	.	-	.	Parent=Os05t0548900-01
Chr05	irgsp1_rep	CDS	27233365	27233386	.	-	0	Parent=Os05t0548900-01
Chr05	irgsp1_rep	CDS	27233101	27233225	.	-	2	Parent=Os05t0548900-01
Chr05	irgsp1_rep	CDS	27232078	27232215	.	-	0	Parent=Os05t0548900-01
Chr05	irgsp1_rep	CDS	27231836	27231973	.	-	0	Parent=Os05t0548900-01
Chr05	irgsp1_rep	CDS	27231533	27231676	.	-	0	Parent=Os05t0548900-01
Chr05	irgsp1_rep	CDS	27231154	27231264	.	-	0	Parent=Os05t0548900-01
Chr05	irgsp1_rep	CDS	27230931	27231072	.	-	0	Parent=Os05t0548900-01
Chr05	irgsp1_rep	CDS	27230576	27230856	.	-	2	Parent=Os05t0548900-01
Chr05	irgsp1_rep	CDS	27230237	27230398	.	-	0	Parent=Os05t0548900-01
Chr05	irgsp1_rep	CDS	27230080	27230133	.	-	0	Parent=Os05t0548900-01
Chr05	irgsp1_rep	CDS	27229881	27229955	.	-	0	Parent=Os05t0548900-01
Chr05	irgsp1_rep	CDS	27229695	27229790	.	-	0	Parent=Os05t0548900-01
Chr05	irgsp1_rep	three_prime_UTR	27229414	27229694	.	-	.	Parent=Os05t0548900-01
Chr05	irgsp1_rep	mRNA	27229694	27232216	.	+	.	ID=Os05t0548950-00;Name=Os05t0548950-00;Locus_id=Os05g0548950;Note=Non-protein coding transcript.;Transcript_evidence=tplb0034h01 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os05t0548950-00
Chr05	irgsp1_rep	exon	27229694	27229784	.	+	.	Parent=Os05t0548950-00
Chr05	irgsp1_rep	exon	27229874	27229977	.	+	.	Parent=Os05t0548950-00
Chr05	irgsp1_rep	exon	27230201	27230410	.	+	.	Parent=Os05t0548950-00
Chr05	irgsp1_rep	exon	27230588	27230849	.	+	.	Parent=Os05t0548950-00
Chr05	irgsp1_rep	exon	27230914	27231069	.	+	.	Parent=Os05t0548950-00
Chr05	irgsp1_rep	exon	27231151	27231261	.	+	.	Parent=Os05t0548950-00
Chr05	irgsp1_rep	exon	27231530	27231681	.	+	.	Parent=Os05t0548950-00
Chr05	irgsp1_rep	exon	27231831	27231964	.	+	.	Parent=Os05t0548950-00
Chr05	irgsp1_rep	exon	27232069	27232216	.	+	.	Parent=Os05t0548950-00
Chr05	irgsp1_rep	mRNA	27236656	27243423	.	-	.	ID=Os05t0549000-01;Name=Os05t0549000-01;Locus_id=Os05g0549000;Note=Epsin-like%2C N-terminal domain containing protein.;Transcript_evidence=AK103211 (DDBJ%2C Best hit);ORF_evidence=NP_565267.1 (RefSeq);GO=Biological Process: clathrin coat assembly (GO:0048268),Cellular Component: clathrin coat (GO:0030118),Molecular Function: phospholipid binding (GO:0005543),Molecular Function: 1-phosphatidylinositol binding (GO:0005545),Molecular Function: clathrin binding (GO:0030276);InterPro=ENTH/VHS (IPR008942),ANTH (IPR011417),Epsin-like%2C N-terminal (IPR013809),Clathrin adaptor%2C phosphoinositide-binding%2C GAT-like (IPR014712);NIAS_FLcDNA=J033122M01;Expression=AK103211;TENOR=Os05t0549000-01;KEGG=Os05t0549000-01
Chr05	irgsp1_rep	five_prime_UTR	27243318	27243423	.	-	.	Parent=Os05t0549000-01
Chr05	irgsp1_rep	CDS	27243228	27243317	.	-	0	Parent=Os05t0549000-01
Chr05	irgsp1_rep	CDS	27242995	27243064	.	-	0	Parent=Os05t0549000-01
Chr05	irgsp1_rep	CDS	27242702	27242799	.	-	2	Parent=Os05t0549000-01
Chr05	irgsp1_rep	CDS	27241376	27241514	.	-	0	Parent=Os05t0549000-01
Chr05	irgsp1_rep	CDS	27241161	27241288	.	-	2	Parent=Os05t0549000-01
Chr05	irgsp1_rep	CDS	27240949	27241041	.	-	0	Parent=Os05t0549000-01
Chr05	irgsp1_rep	CDS	27240789	27240839	.	-	0	Parent=Os05t0549000-01
Chr05	irgsp1_rep	CDS	27240154	27240219	.	-	0	Parent=Os05t0549000-01
Chr05	irgsp1_rep	CDS	27240010	27240075	.	-	0	Parent=Os05t0549000-01
Chr05	irgsp1_rep	CDS	27239822	27239902	.	-	0	Parent=Os05t0549000-01
Chr05	irgsp1_rep	CDS	27239663	27239740	.	-	0	Parent=Os05t0549000-01
Chr05	irgsp1_rep	CDS	27238586	27238768	.	-	0	Parent=Os05t0549000-01
Chr05	irgsp1_rep	CDS	27238441	27238516	.	-	0	Parent=Os05t0549000-01
Chr05	irgsp1_rep	CDS	27238215	27238339	.	-	2	Parent=Os05t0549000-01
Chr05	irgsp1_rep	CDS	27237009	27237368	.	-	0	Parent=Os05t0549000-01
Chr05	irgsp1_rep	three_prime_UTR	27236656	27237008	.	-	.	Parent=Os05t0549000-01
Chr05	irgsp1_rep	mRNA	27236794	27243388	.	-	.	ID=Os05t0549000-02;Name=Os05t0549000-02;Locus_id=Os05g0549000;Note=Epsin-like%2C N-terminal domain containing protein.;Transcript_evidence=AK072302 (DDBJ%2C Best hit);ORF_evidence=NP_565267.1 (RefSeq);GO=Biological Process: clathrin coat assembly (GO:0048268),Cellular Component: clathrin coat (GO:0030118),Molecular Function: phospholipid binding (GO:0005543),Molecular Function: 1-phosphatidylinositol binding (GO:0005545),Molecular Function: clathrin binding (GO:0030276);InterPro=ENTH/VHS (IPR008942),ANTH (IPR011417),Epsin-like%2C N-terminal (IPR013809),Clathrin adaptor%2C phosphoinositide-binding%2C GAT-like (IPR014712);NIAS_FLcDNA=J023023B03;Expression=AK072302;TENOR=Os05t0549000-02;KEGG=Os05t0549000-02
Chr05	irgsp1_rep	five_prime_UTR	27243318	27243388	.	-	.	Parent=Os05t0549000-02
Chr05	irgsp1_rep	CDS	27243228	27243317	.	-	0	Parent=Os05t0549000-02
Chr05	irgsp1_rep	CDS	27242995	27243064	.	-	0	Parent=Os05t0549000-02
Chr05	irgsp1_rep	CDS	27242702	27242799	.	-	2	Parent=Os05t0549000-02
Chr05	irgsp1_rep	CDS	27241376	27241514	.	-	0	Parent=Os05t0549000-02
Chr05	irgsp1_rep	CDS	27241161	27241288	.	-	2	Parent=Os05t0549000-02
Chr05	irgsp1_rep	CDS	27240949	27241041	.	-	0	Parent=Os05t0549000-02
Chr05	irgsp1_rep	CDS	27240789	27240839	.	-	0	Parent=Os05t0549000-02
Chr05	irgsp1_rep	CDS	27240154	27240219	.	-	0	Parent=Os05t0549000-02
Chr05	irgsp1_rep	CDS	27240010	27240075	.	-	0	Parent=Os05t0549000-02
Chr05	irgsp1_rep	CDS	27239822	27239902	.	-	0	Parent=Os05t0549000-02
Chr05	irgsp1_rep	CDS	27239663	27239740	.	-	0	Parent=Os05t0549000-02
Chr05	irgsp1_rep	CDS	27238586	27238768	.	-	0	Parent=Os05t0549000-02
Chr05	irgsp1_rep	CDS	27238441	27238516	.	-	0	Parent=Os05t0549000-02
Chr05	irgsp1_rep	CDS	27238215	27238339	.	-	2	Parent=Os05t0549000-02
Chr05	irgsp1_rep	CDS	27237009	27237368	.	-	0	Parent=Os05t0549000-02
Chr05	irgsp1_rep	three_prime_UTR	27236794	27237008	.	-	.	Parent=Os05t0549000-02
Chr05	irgsp1_rep	mRNA	27239805	27243217	.	+	.	ID=Os05t0549050-01;Name=Os05t0549050-01;Locus_id=Os05g0549050;Note=Non-protein coding transcript.;Transcript_evidence=AK288354 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090024G20;TENOR=Os05t0549050-01
Chr05	irgsp1_rep	exon	27239805	27243217	.	+	.	Parent=Os05t0549050-01
Chr05	irgsp1_rep	mRNA	27245213	27249448	.	-	.	ID=Os05t0549100-01;Name=Os05t0549100-01;Locus_id=Os05g0549100;CGSNL Gene Symbol=STN7;CGSNL Gene Name=STATE TRANSITION 7;Oryzabase Gene Symbol Synonym(s)=OsSTN7;Oryzabase Gene Name Synonym(s)=STN7 kinase;Note=Similar to serine/threonine-protein kinase SNT7.;Transcript_evidence=AK099842 (DDBJ%2C Best hit);ORF_evidence=B6SXS7 (UniProt);GO=Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J013108J17;Oryzabase=15091;Expression=AK099842;TENOR=Os05t0549100-01;KEGG=Os05t0549100-01
Chr05	irgsp1_rep	five_prime_UTR	27249399	27249448	.	-	.	Parent=Os05t0549100-01
Chr05	irgsp1_rep	CDS	27249021	27249398	.	-	0	Parent=Os05t0549100-01
Chr05	irgsp1_rep	CDS	27248853	27248942	.	-	0	Parent=Os05t0549100-01
Chr05	irgsp1_rep	CDS	27248328	27248447	.	-	0	Parent=Os05t0549100-01
Chr05	irgsp1_rep	CDS	27248083	27248217	.	-	0	Parent=Os05t0549100-01
Chr05	irgsp1_rep	three_prime_UTR	27247612	27248082	.	-	.	Parent=Os05t0549100-01
Chr05	irgsp1_rep	three_prime_UTR	27247438	27247531	.	-	.	Parent=Os05t0549100-01
Chr05	irgsp1_rep	three_prime_UTR	27247207	27247300	.	-	.	Parent=Os05t0549100-01
Chr05	irgsp1_rep	three_prime_UTR	27247052	27247108	.	-	.	Parent=Os05t0549100-01
Chr05	irgsp1_rep	three_prime_UTR	27245949	27246362	.	-	.	Parent=Os05t0549100-01
Chr05	irgsp1_rep	three_prime_UTR	27245213	27245834	.	-	.	Parent=Os05t0549100-01
Chr05	irgsp1_rep	mRNA	27245446	27249427	.	-	.	ID=Os05t0549100-02;Name=Os05t0549100-02;Locus_id=Os05g0549100;CGSNL Gene Symbol=STN7;CGSNL Gene Name=STATE TRANSITION 7;Oryzabase Gene Symbol Synonym(s)=OsSTN7;Oryzabase Gene Name Synonym(s)=STN7 kinase;Note=Similar to Serine/threonine-protein kinase SNT7%2C chloroplast precursor (EC 2.7.1.37) (Stt7 homolog).;Transcript_evidence=AK072422 (DDBJ%2C Best hit);ORF_evidence=B6SXS7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023089B02;Oryzabase=15091;Expression=AK072422;TENOR=Os05t0549100-02;KEGG=Os05t0549100-02 (EC:2.7.1.37)
Chr05	irgsp1_rep	five_prime_UTR	27249399	27249427	.	-	.	Parent=Os05t0549100-02
Chr05	irgsp1_rep	CDS	27249021	27249398	.	-	0	Parent=Os05t0549100-02
Chr05	irgsp1_rep	CDS	27248853	27248942	.	-	0	Parent=Os05t0549100-02
Chr05	irgsp1_rep	CDS	27248328	27248447	.	-	0	Parent=Os05t0549100-02
Chr05	irgsp1_rep	CDS	27248113	27248217	.	-	0	Parent=Os05t0549100-02
Chr05	irgsp1_rep	CDS	27247612	27247780	.	-	0	Parent=Os05t0549100-02
Chr05	irgsp1_rep	CDS	27247438	27247531	.	-	2	Parent=Os05t0549100-02
Chr05	irgsp1_rep	CDS	27247207	27247300	.	-	1	Parent=Os05t0549100-02
Chr05	irgsp1_rep	CDS	27247052	27247108	.	-	0	Parent=Os05t0549100-02
Chr05	irgsp1_rep	CDS	27245949	27246362	.	-	0	Parent=Os05t0549100-02
Chr05	irgsp1_rep	CDS	27245676	27245834	.	-	0	Parent=Os05t0549100-02
Chr05	irgsp1_rep	three_prime_UTR	27245446	27245675	.	-	.	Parent=Os05t0549100-02
Chr05	irgsp1_rep	mRNA	27245483	27248953	.	+	.	ID=Os05t0549166-00;Name=Os05t0549166-00;Locus_id=Os05g0549166;Note=Hypothetical protein.;Transcript_evidence=tplb0057o06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0549166-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	27245483	27245503	.	+	.	Parent=Os05t0549166-00
Chr05	irgsp1_rep	CDS	27245504	27245731	.	+	0	Parent=Os05t0549166-00
Chr05	irgsp1_rep	three_prime_UTR	27245732	27245836	.	+	.	Parent=Os05t0549166-00
Chr05	irgsp1_rep	three_prime_UTR	27245955	27246377	.	+	.	Parent=Os05t0549166-00
Chr05	irgsp1_rep	three_prime_UTR	27247070	27247102	.	+	.	Parent=Os05t0549166-00
Chr05	irgsp1_rep	three_prime_UTR	27247202	27247289	.	+	.	Parent=Os05t0549166-00
Chr05	irgsp1_rep	three_prime_UTR	27247424	27247530	.	+	.	Parent=Os05t0549166-00
Chr05	irgsp1_rep	three_prime_UTR	27247611	27247777	.	+	.	Parent=Os05t0549166-00
Chr05	irgsp1_rep	three_prime_UTR	27248110	27248217	.	+	.	Parent=Os05t0549166-00
Chr05	irgsp1_rep	three_prime_UTR	27248328	27248447	.	+	.	Parent=Os05t0549166-00
Chr05	irgsp1_rep	three_prime_UTR	27248853	27248953	.	+	.	Parent=Os05t0549166-00
Chr05	irgsp1_rep	mRNA	27257404	27257881	.	+	.	ID=Os05t0549232-00;Name=Os05t0549232-00;Locus_id=Os05g0549232;Note=Similar to DVL4/RTFL17 (ROTUNDIFOLIA LIKE 17).;Transcript_evidence=AK365742 (DDBJ);ORF_evidence=NP_001077795.1 (RefSeq);InterPro=DVL (IPR012552);TENOR=Os05t0549232-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	27257404	27257544	.	+	0	Parent=Os05t0549232-00
Chr05	irgsp1_rep	three_prime_UTR	27257545	27257881	.	+	.	Parent=Os05t0549232-00
Chr05	irgsp1_rep	mRNA	27261643	27262993	.	+	.	ID=Os05t0549300-01;Name=Os05t0549300-01;Locus_id=Os05g0549300;Note=Conserved hypothetical protein.;Transcript_evidence=AK064256 (DDBJ%2C Best hit);ORF_evidence=A2Y756 (UniProt);NIAS_FLcDNA=002-105-C10;Expression=AK064256;TENOR=Os05t0549300-01;KEGG=Os05t0549300-01
Chr05	irgsp1_rep	five_prime_UTR	27261643	27261798	.	+	.	Parent=Os05t0549300-01
Chr05	irgsp1_rep	CDS	27261799	27262800	.	+	0	Parent=Os05t0549300-01
Chr05	irgsp1_rep	three_prime_UTR	27262801	27262993	.	+	.	Parent=Os05t0549300-01
Chr05	irgsp1_rep	mRNA	27286039	27286581	.	+	.	ID=Os05t0549500-00;Name=Os05t0549500-00;Locus_id=Os05g0549500;Note=Conserved hypothetical protein.;Transcript_evidence=AK374981 (DDBJ);ORF_evidence=B9FHM2 (UniProt);TENOR=Os05t0549500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	27286039	27286581	.	+	0	Parent=Os05t0549500-00
Chr05	irgsp1_rep	mRNA	27287084	27289876	.	+	.	ID=Os05t0549600-01;Name=Os05t0549600-01;Locus_id=Os05g0549600;Note=Similar to cDNA clone:J013113G18%2C full insert sequence.;Transcript_evidence=AK061016 (DDBJ%2C Best hit);ORF_evidence=B7EPP3 (UniProt);GO=Molecular Function: aminoacyl-tRNA hydrolase activity (GO:0004045);InterPro=Peptidyl-tRNA hydrolase (IPR001328),Peptidyl-tRNA hydrolase%2C conserved site (IPR018171);NIAS_FLcDNA=006-204-B10;TENOR=Os05t0549600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	27287084	27287086	.	+	.	Parent=Os05t0549600-01
Chr05	irgsp1_rep	CDS	27287087	27287356	.	+	0	Parent=Os05t0549600-01
Chr05	irgsp1_rep	CDS	27287755	27287839	.	+	0	Parent=Os05t0549600-01
Chr05	irgsp1_rep	CDS	27288301	27288360	.	+	2	Parent=Os05t0549600-01
Chr05	irgsp1_rep	CDS	27288452	27288477	.	+	2	Parent=Os05t0549600-01
Chr05	irgsp1_rep	three_prime_UTR	27288478	27288502	.	+	.	Parent=Os05t0549600-01
Chr05	irgsp1_rep	three_prime_UTR	27288580	27288653	.	+	.	Parent=Os05t0549600-01
Chr05	irgsp1_rep	three_prime_UTR	27289118	27289176	.	+	.	Parent=Os05t0549600-01
Chr05	irgsp1_rep	three_prime_UTR	27289250	27289326	.	+	.	Parent=Os05t0549600-01
Chr05	irgsp1_rep	three_prime_UTR	27289497	27289876	.	+	.	Parent=Os05t0549600-01
Chr05	irgsp1_rep	mRNA	27290558	27292494	.	+	.	ID=Os05t0549700-01;Name=Os05t0549700-01;Locus_id=Os05g0549700;Note=Similar to Threonine synthase%2C chloroplast precursor (EC 4.2.3.1) (TS).;Transcript_evidence=AK101669 (DDBJ%2C Best hit);ORF_evidence=B6TPP7 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: metabolic process (GO:0008152),Biological Process: threonine biosynthetic process (GO:0009088),Molecular Function: catalytic activity (GO:0003824),Molecular Function: threonine synthase activity (GO:0004795),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Serine/threonine dehydratase%2C pyridoxal-phosphate-binding site (IPR000634),Pyridoxal phosphate-dependent enzyme%2C beta subunit (IPR001926),Threonine synthase (IPR004450);NIAS_FLcDNA=J033058D04;Expression=AK101669;TENOR=Os05t0549700-01;KEGG=Os05t0549700-01 (EC:4.2.3.1)
Chr05	irgsp1_rep	five_prime_UTR	27290558	27290655	.	+	.	Parent=Os05t0549700-01
Chr05	irgsp1_rep	CDS	27290656	27292221	.	+	0	Parent=Os05t0549700-01
Chr05	irgsp1_rep	three_prime_UTR	27292222	27292494	.	+	.	Parent=Os05t0549700-01
Chr05	irgsp1_rep	mRNA	27290608	27292481	.	+	.	ID=Os05t0549700-02;Name=Os05t0549700-02;Locus_id=Os05g0549700;Note=Similar to Threonine synthase%2C chloroplast precursor (EC 4.2.3.1) (TS).;Transcript_evidence=AK109478 (DDBJ%2C Best hit);ORF_evidence=B6TPP7 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: metabolic process (GO:0008152),Biological Process: threonine biosynthetic process (GO:0009088),Molecular Function: catalytic activity (GO:0003824),Molecular Function: threonine synthase activity (GO:0004795),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Serine/threonine dehydratase%2C pyridoxal-phosphate-binding site (IPR000634),Pyridoxal phosphate-dependent enzyme%2C beta subunit (IPR001926),Threonine synthase (IPR004450);NIAS_FLcDNA=001-200-F04;Expression=AK109478;TENOR=Os05t0549700-02;KEGG=Os05t0549700-02 (EC:4.2.3.1)
Chr05	irgsp1_rep	five_prime_UTR	27290608	27290655	.	+	.	Parent=Os05t0549700-02
Chr05	irgsp1_rep	CDS	27290656	27292221	.	+	0	Parent=Os05t0549700-02
Chr05	irgsp1_rep	three_prime_UTR	27292222	27292481	.	+	.	Parent=Os05t0549700-02
Chr05	irgsp1_rep	mRNA	27302985	27304314	.	+	.	ID=Os05t0549800-01;Name=Os05t0549800-01;Locus_id=Os05g0549800;RAP-DB Gene Symbol Synonym(s)=OsRAV12;RAP-DB Gene Name Synonym(s)=RELATED TO ABI3 AND VP1 12;CGSNL Gene Symbol=AP2/EREBP96;CGSNL Gene Name=APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 96;Oryzabase Gene Symbol Synonym(s)=AP2/EREBP#096%2C OsRAV12%2C RAV12;Oryzabase Gene Name Synonym(s)=APETALA2/ethylene-responsive element binding protein 96%2C RAV transcription factor 12;Note=RAV family protein%2C Regulation of carpel development%2C Control of seed size;Transcript_evidence=AK243363 (truncated),Inferred from literature;ORF_evidence=Q6L4H4;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-binding transcription factor activity (GO:0003700);InterPro=DNA-binding domain superfamily (IPR016177),AP2/ERF domain superfamily (IPR036955),DNA-binding pseudobarrel domain superfamily (IPR015300),AP2/ERF domain (IPR001471),B3 DNA binding domain (IPR003340);NIAS_FLcDNA=J100061M08 (truncated);Manual Curation=June 23%2C 2020;Literature_PMID=32554473;Oryzabase=10661;TENOR=Os05t0549800-01;KEGG=Os05t0549800-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	27302985	27304169	.	+	0	Parent=Os05t0549800-01
Chr05	irgsp1_rep	three_prime_UTR	27304170	27304314	.	+	.	Parent=Os05t0549800-01
Chr05	irgsp1_rep	mRNA	27311815	27312465	.	+	.	ID=Os05t0549850-00;Name=Os05t0549850-00;Locus_id=Os05g0549850;Note=Conserved hypothetical protein.;Transcript_evidence=EU950072 (DDBJ);ORF_evidence=NP_001045149.2 (RefSeq);TENOR=Os05t0549850-00
Chr05	irgsp1_rep	CDS	27311815	27312465	.	+	0	Parent=Os05t0549850-00
Chr05	irgsp1_rep	mRNA	27313103	27314293	.	-	.	ID=Os05t0549900-00;Name=Os05t0549900-00;Locus_id=Os05g0549900;Note=Similar to Lipid phosphate phosphatase 3.;Transcript_evidence=EU974292 (DDBJ);ORF_evidence=B6SSC1 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824);InterPro=Phosphatidic acid phosphatase type 2/haloperoxidase (IPR000326),Phosphatidic acid phosphatase/chloroperoxidase%2C N-terminal (IPR016118);TENOR=Os05t0549900-00;KEGG=Os05t0549900-00
Chr05	irgsp1_rep	CDS	27313963	27314293	.	-	0	Parent=Os05t0549900-00
Chr05	irgsp1_rep	CDS	27313643	27313752	.	-	2	Parent=Os05t0549900-00
Chr05	irgsp1_rep	CDS	27313440	27313533	.	-	0	Parent=Os05t0549900-00
Chr05	irgsp1_rep	CDS	27313103	27313305	.	-	2	Parent=Os05t0549900-00
Chr05	irgsp1_rep	mRNA	27317464	27320413	.	+	.	ID=Os05t0550000-00;Name=Os05t0550000-00;Locus_id=Os05g0550000;Oryzabase Gene Symbol Synonym(s)=OsRFPH2-20;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPH2-20%2C RING-H2 protein 20;Note=Similar to protein binding protein.;Transcript_evidence=EU959102 (DDBJ);ORF_evidence=NP_001152137.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);Oryzabase=11781;TENOR=Os05t0550000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	27317464	27318000	.	+	0	Parent=Os05t0550000-00
Chr05	irgsp1_rep	CDS	27318181	27318360	.	+	0	Parent=Os05t0550000-00
Chr05	irgsp1_rep	CDS	27319685	27319780	.	+	0	Parent=Os05t0550000-00
Chr05	irgsp1_rep	CDS	27319881	27320030	.	+	0	Parent=Os05t0550000-00
Chr05	irgsp1_rep	CDS	27320118	27320249	.	+	0	Parent=Os05t0550000-00
Chr05	irgsp1_rep	three_prime_UTR	27320250	27320413	.	+	.	Parent=Os05t0550000-00
Chr05	irgsp1_rep	mRNA	27320573	27322889	.	-	.	ID=Os05t0550100-00;Name=Os05t0550100-00;Locus_id=Os05g0550100;Note=Protein of unknown function DUF827%2C plant domain containing protein.;Transcript_evidence=AK360453 (DDBJ);ORF_evidence=B8AWH4 (UniProt);InterPro=Protein of unknown function DUF827%2C plant (IPR008545);TENOR=Os05t0550100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	27322758	27322889	.	-	0	Parent=Os05t0550100-00
Chr05	irgsp1_rep	CDS	27320573	27322162	.	-	0	Parent=Os05t0550100-00
Chr05	irgsp1_rep	mRNA	27320620	27325078	.	+	.	ID=Os05t0550200-01;Name=Os05t0550200-01;Locus_id=Os05g0550200;Note=Hypothetical protein.;Transcript_evidence=AK072364 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023058A03;Expression=AK072364;TENOR=Os05t0550200-01;KEGG=Os05t0550200-01
Chr05	irgsp1_rep	five_prime_UTR	27320620	27321134	.	+	.	Parent=Os05t0550200-01
Chr05	irgsp1_rep	CDS	27321135	27321881	.	+	0	Parent=Os05t0550200-01
Chr05	irgsp1_rep	three_prime_UTR	27321882	27323508	.	+	.	Parent=Os05t0550200-01
Chr05	irgsp1_rep	three_prime_UTR	27323714	27324551	.	+	.	Parent=Os05t0550200-01
Chr05	irgsp1_rep	three_prime_UTR	27324681	27325078	.	+	.	Parent=Os05t0550200-01
Chr05	irgsp1_rep	mRNA	27323596	27325180	.	-	.	ID=Os05t0550250-00;Name=Os05t0550250-00;Locus_id=Os05g0550250;Note=Similar to seed maturation protein.;Transcript_evidence=FP096666 (DDBJ);ORF_evidence=NP_001150885.1 (RefSeq);GO=Cellular Component: endoplasmic reticulum (GO:0005783);InterPro=Reticulon (IPR003388);TENOR=Os05t0550250-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	27325081	27325180	.	-	.	Parent=Os05t0550250-00
Chr05	irgsp1_rep	CDS	27324978	27325080	.	-	0	Parent=Os05t0550250-00
Chr05	irgsp1_rep	CDS	27324696	27324876	.	-	2	Parent=Os05t0550250-00
Chr05	irgsp1_rep	CDS	27324398	27324539	.	-	1	Parent=Os05t0550250-00
Chr05	irgsp1_rep	CDS	27324107	27324176	.	-	0	Parent=Os05t0550250-00
Chr05	irgsp1_rep	CDS	27323691	27323857	.	-	2	Parent=Os05t0550250-00
Chr05	irgsp1_rep	three_prime_UTR	27323596	27323690	.	-	.	Parent=Os05t0550250-00
Chr05	irgsp1_rep	mRNA	27330717	27331341	.	+	.	ID=Os05t0550300-01;Name=Os05t0550300-01;Locus_id=Os05g0550300;Oryzabase Gene Symbol Synonym(s)=OsLTP2.4%2C OsLtpII.4;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein 2.4%2C lipid transfer protein 2.4%2C type 2 non-specific lipid transfer protein 4;Note=Similar to Lipid transfer protein (Fragment).;Transcript_evidence=AK062463 (DDBJ%2C Best hit);ORF_evidence=P93191 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=001-103-D11;Oryzabase=13532;Expression=AK062463;TENOR=Os05t0550300-01;KEGG=Os05t0550300-01
Chr05	irgsp1_rep	five_prime_UTR	27330717	27330814	.	+	.	Parent=Os05t0550300-01
Chr05	irgsp1_rep	CDS	27330815	27331099	.	+	0	Parent=Os05t0550300-01
Chr05	irgsp1_rep	three_prime_UTR	27331100	27331341	.	+	.	Parent=Os05t0550300-01
Chr05	irgsp1_rep	mRNA	27345715	27346293	.	+	.	ID=Os05t0550600-02;Name=Os05t0550600-02;Locus_id=Os05g0550600;Oryzabase Gene Symbol Synonym(s)=OsLTP2.5%2C OsLtpII.5;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein 2.5%2C lipid transfer protein 2.5%2C type 2 non-specific lipid transfer protein 5;Note=Similar to Nonspecific lipid-transfer protein 2 (nsLTP2) (7 kDa lipid transfer protein).;Transcript_evidence=AK119689 (DDBJ%2C Best hit),AK063729 (DDBJ%2C Best hit);ORF_evidence=NP_001152727.1 (RefSeq);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=002-157-B03,001-120-E03;Oryzabase=13533;Expression=AK119689;TENOR=Os05t0550600-02;KEGG=Os05t0550600-02
Chr05	irgsp1_rep	five_prime_UTR	27345715	27345797	.	+	.	Parent=Os05t0550600-02
Chr05	irgsp1_rep	CDS	27345798	27346088	.	+	0	Parent=Os05t0550600-02
Chr05	irgsp1_rep	three_prime_UTR	27346089	27346293	.	+	.	Parent=Os05t0550600-02
Chr05	irgsp1_rep	mRNA	27346382	27353777	.	+	.	ID=Os05t0550650-00;Name=Os05t0550650-00;Locus_id=Os05g0550650;Note=Non-protein coding transcript.;Transcript_evidence=tplb0026e19 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os05t0550650-00
Chr05	irgsp1_rep	exon	27346382	27347112	.	+	.	Parent=Os05t0550650-00
Chr05	irgsp1_rep	exon	27353546	27353777	.	+	.	Parent=Os05t0550650-00
Chr05	irgsp1_rep	mRNA	27346433	27356977	.	-	.	ID=Os05t0550700-00;Name=Os05t0550700-00;Locus_id=Os05g0550700;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK336227 (DDBJ);ORF_evidence=B9FHM7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os05t0550700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	27356763	27356977	.	-	.	Parent=Os05t0550700-00
Chr05	irgsp1_rep	CDS	27356729	27356762	.	-	0	Parent=Os05t0550700-00
Chr05	irgsp1_rep	CDS	27353547	27353932	.	-	2	Parent=Os05t0550700-00
Chr05	irgsp1_rep	CDS	27346442	27347110	.	-	0	Parent=Os05t0550700-00
Chr05	irgsp1_rep	three_prime_UTR	27346433	27346441	.	-	.	Parent=Os05t0550700-00
Chr05	irgsp1_rep	mRNA	27360938	27367472	.	+	.	ID=Os05t0550800-01;Name=Os05t0550800-01;Locus_id=Os05g0550800;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK241787 (DDBJ%2C Best hit);ORF_evidence=B8AWE6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J065207G21;TENOR=Os05t0550800-01;KEGG=Os05t0550800-01
Chr05	irgsp1_rep	five_prime_UTR	27360938	27360949	.	+	.	Parent=Os05t0550800-01
Chr05	irgsp1_rep	CDS	27360950	27361781	.	+	0	Parent=Os05t0550800-01
Chr05	irgsp1_rep	CDS	27365162	27365197	.	+	2	Parent=Os05t0550800-01
Chr05	irgsp1_rep	CDS	27365457	27365744	.	+	2	Parent=Os05t0550800-01
Chr05	irgsp1_rep	CDS	27366160	27366613	.	+	2	Parent=Os05t0550800-01
Chr05	irgsp1_rep	CDS	27366844	27367288	.	+	1	Parent=Os05t0550800-01
Chr05	irgsp1_rep	three_prime_UTR	27367289	27367472	.	+	.	Parent=Os05t0550800-01
Chr05	irgsp1_rep	mRNA	27366229	27366927	.	-	.	ID=Os05t0550900-00;Name=Os05t0550900-00;Locus_id=Os05g0550900;Note=Hypothetical protein.;Transcript_evidence=AK368632 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0550900-00
Chr05	irgsp1_rep	five_prime_UTR	27366926	27366927	.	-	.	Parent=Os05t0550900-00
Chr05	irgsp1_rep	CDS	27366837	27366925	.	-	0	Parent=Os05t0550900-00
Chr05	irgsp1_rep	CDS	27366229	27366624	.	-	1	Parent=Os05t0550900-00
Chr05	irgsp1_rep	mRNA	27377539	27382166	.	+	.	ID=Os05t0551000-01;Name=Os05t0551000-01;Locus_id=Os05g0551000;RAP-DB Gene Symbol Synonym(s)=OsHRZ2;RAP-DB Gene Name Synonym(s)=HEMERYTHRIN MOTIF-CONTAINING REALLY INTERESTING NEW GENE AND ZINC-FINGER PROTEIN2%2C Haemerythrin motif-containing RING- and Zn-finger protein2;CGSNL Gene Symbol=HRZ2;CGSNL Gene Name=HAEMERYTHRIN MOTIF-CONTAINING RING- AND ZINC-FINGER PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsRFPH2-24%2C OsHRZ2;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPH2-24%2C RING-H2 protein 24%2C Haemerythrin motif-containing Really Interesting New Gene (RING)-and Zinc-finger protein 2%2C Haemerythrin motif-containing RING- and Zinc-finger protein 2;Note=Iron-binding haemerythrin RING ubiquitin ligase%2C Iron-binding sensor%2C Regulation of iron acquisition;Transcript_evidence=AK068028,BR001013;ORF_evidence=Q6AUD8;GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Haemerythrin-like (IPR012312),Zinc finger%2C CHY-type (IPR008913),Zinc finger%2C CTCHY-type (IPR017921),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841);NIAS_FLcDNA=J013131L14;Manual Curation=September 5%2C 2017;Literature_PMID=24253678;Oryzabase=11785;TENOR=Os05t0551000-01;Subcellular location=nucleus (GO:0005634), cytosol (GO:0005829)
Chr05	irgsp1_rep	five_prime_UTR	27377539	27377705	.	+	.	Parent=Os05t0551000-01
Chr05	irgsp1_rep	CDS	27377706	27377747	.	+	0	Parent=Os05t0551000-01
Chr05	irgsp1_rep	CDS	27377848	27378016	.	+	0	Parent=Os05t0551000-01
Chr05	irgsp1_rep	CDS	27378124	27379314	.	+	2	Parent=Os05t0551000-01
Chr05	irgsp1_rep	CDS	27379971	27380142	.	+	2	Parent=Os05t0551000-01
Chr05	irgsp1_rep	CDS	27380258	27380479	.	+	1	Parent=Os05t0551000-01
Chr05	irgsp1_rep	CDS	27381001	27381138	.	+	1	Parent=Os05t0551000-01
Chr05	irgsp1_rep	CDS	27381247	27381481	.	+	1	Parent=Os05t0551000-01
Chr05	irgsp1_rep	CDS	27381574	27381633	.	+	0	Parent=Os05t0551000-01
Chr05	irgsp1_rep	CDS	27381795	27381866	.	+	0	Parent=Os05t0551000-01
Chr05	irgsp1_rep	CDS	27381944	27382078	.	+	0	Parent=Os05t0551000-01
Chr05	irgsp1_rep	three_prime_UTR	27382079	27382166	.	+	.	Parent=Os05t0551000-01
Chr05	irgsp1_rep	mRNA	27383401	27387244	.	-	.	ID=Os05t0551100-01;Name=Os05t0551100-01;Locus_id=Os05g0551100;Note=Conserved hypothetical protein.;Transcript_evidence=AK066555 (DDBJ%2C Best hit);ORF_evidence=B9FHM9 (UniProt);NIAS_FLcDNA=J013071B16;Expression=AK066555;TENOR=Os05t0551100-01;KEGG=Os05t0551100-01
Chr05	irgsp1_rep	five_prime_UTR	27387009	27387244	.	-	.	Parent=Os05t0551100-01
Chr05	irgsp1_rep	CDS	27386840	27387008	.	-	0	Parent=Os05t0551100-01
Chr05	irgsp1_rep	CDS	27386609	27386688	.	-	2	Parent=Os05t0551100-01
Chr05	irgsp1_rep	CDS	27384508	27386220	.	-	0	Parent=Os05t0551100-01
Chr05	irgsp1_rep	CDS	27384316	27384391	.	-	0	Parent=Os05t0551100-01
Chr05	irgsp1_rep	CDS	27383941	27384142	.	-	2	Parent=Os05t0551100-01
Chr05	irgsp1_rep	CDS	27383675	27383858	.	-	1	Parent=Os05t0551100-01
Chr05	irgsp1_rep	three_prime_UTR	27383401	27383674	.	-	.	Parent=Os05t0551100-01
Chr05	irgsp1_rep	mRNA	27403242	27403780	.	-	.	ID=Os05t0551350-00;Name=Os05t0551350-00;Locus_id=Os05g0551350;Note=Hypothetical conserved gene.;Transcript_evidence=CU405714 (DDBJ%2C Best hit);ORF_evidence=XP_002441479.1 (RefSeq);TENOR=Os05t0551350-00;KEGG=Os05t0551350-00
Chr05	irgsp1_rep	five_prime_UTR	27403747	27403780	.	-	.	Parent=Os05t0551350-00
Chr05	irgsp1_rep	CDS	27403576	27403746	.	-	0	Parent=Os05t0551350-00
Chr05	irgsp1_rep	three_prime_UTR	27403242	27403575	.	-	.	Parent=Os05t0551350-00
Chr05	irgsp1_rep	mRNA	27413101	27414368	.	-	.	ID=Os05t0551500-01;Name=Os05t0551500-01;Locus_id=Os05g0551500;Oryzabase Gene Symbol Synonym(s)=OsEnS-78;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 78;Note=Protein of unknown function DUF1639 family protein.;Transcript_evidence=AK108248 (DDBJ%2C Best hit);ORF_evidence=B8AWE8 (UniProt);InterPro=Protein of unknown function DUF1639 (IPR012438);NIAS_FLcDNA=002-140-H09;Oryzabase=18395;Expression=AK108248;TENOR=Os05t0551500-01;KEGG=Os05t0551500-01
Chr05	irgsp1_rep	five_prime_UTR	27414192	27414368	.	-	.	Parent=Os05t0551500-01
Chr05	irgsp1_rep	CDS	27413634	27414191	.	-	0	Parent=Os05t0551500-01
Chr05	irgsp1_rep	CDS	27413457	27413516	.	-	0	Parent=Os05t0551500-01
Chr05	irgsp1_rep	CDS	27413347	27413361	.	-	0	Parent=Os05t0551500-01
Chr05	irgsp1_rep	three_prime_UTR	27413101	27413346	.	-	.	Parent=Os05t0551500-01
Chr05	irgsp1_rep	mRNA	27412286	27414193	.	-	.	ID=Os05t0551500-02;Name=Os05t0551500-02;Locus_id=Os05g0551500;Oryzabase Gene Symbol Synonym(s)=OsEnS-78;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 78;Note=Protein of unknown function DUF1639 family protein.;Transcript_evidence=AK109642 (DDBJ%2C Best hit);ORF_evidence=B8AWE8 (UniProt);InterPro=Protein of unknown function DUF1639 (IPR012438);NIAS_FLcDNA=002-138-F01;Oryzabase=18395;Expression=AK109642;TENOR=Os05t0551500-02;KEGG=Os05t0551500-02
Chr05	irgsp1_rep	five_prime_UTR	27414192	27414193	.	-	.	Parent=Os05t0551500-02
Chr05	irgsp1_rep	CDS	27413634	27414191	.	-	0	Parent=Os05t0551500-02
Chr05	irgsp1_rep	CDS	27413457	27413516	.	-	0	Parent=Os05t0551500-02
Chr05	irgsp1_rep	CDS	27413347	27413361	.	-	0	Parent=Os05t0551500-02
Chr05	irgsp1_rep	three_prime_UTR	27412286	27413346	.	-	.	Parent=Os05t0551500-02
Chr05	irgsp1_rep	mRNA	27415315	27415787	.	-	.	ID=Os05t0551550-01;Name=Os05t0551550-01;Locus_id=Os05g0551550;Note=Non-protein coding transcript.;Transcript_evidence=AK242206 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J075169M15;TENOR=Os05t0551550-01
Chr05	irgsp1_rep	exon	27415315	27415787	.	-	.	Parent=Os05t0551550-01
Chr05	irgsp1_rep	mRNA	27417896	27419058	.	+	.	ID=Os05t0551600-01;Name=Os05t0551600-01;Locus_id=Os05g0551600;Note=Hypothetical conserved gene.;Transcript_evidence=AK287535 (DDBJ%2C Best hit);ORF_evidence=B8AWE9 (UniProt);InterPro=Protein of unknown function DUF1639 (IPR012438);NIAS_FLcDNA=J065004E11;TENOR=Os05t0551600-01;KEGG=Os05t0551600-01
Chr05	irgsp1_rep	five_prime_UTR	27417896	27417968	.	+	.	Parent=Os05t0551600-01
Chr05	irgsp1_rep	CDS	27417969	27418520	.	+	0	Parent=Os05t0551600-01
Chr05	irgsp1_rep	CDS	27418621	27418683	.	+	0	Parent=Os05t0551600-01
Chr05	irgsp1_rep	CDS	27418767	27418772	.	+	0	Parent=Os05t0551600-01
Chr05	irgsp1_rep	three_prime_UTR	27418773	27419058	.	+	.	Parent=Os05t0551600-01
Chr05	irgsp1_rep	mRNA	27422900	27424575	.	+	.	ID=Os05t0551650-01;Name=Os05t0551650-01;Locus_id=Os05g0551650;Note=Hypothetical gene.;Transcript_evidence=AK107474 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-129-B07;Expression=AK107474;TENOR=Os05t0551650-01;KEGG=Os05t0551650-01
Chr05	irgsp1_rep	five_prime_UTR	27422900	27423549	.	+	.	Parent=Os05t0551650-01
Chr05	irgsp1_rep	CDS	27423550	27423783	.	+	0	Parent=Os05t0551650-01
Chr05	irgsp1_rep	three_prime_UTR	27423784	27424575	.	+	.	Parent=Os05t0551650-01
Chr05	irgsp1_rep	mRNA	27423027	27424795	.	-	.	ID=Os05t0551700-01;Name=Os05t0551700-01;Locus_id=Os05g0551700;CGSNL Gene Symbol=IPT7;CGSNL Gene Name=ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 7;Oryzabase Gene Symbol Synonym(s)=OsIPT7;Oryzabase Gene Name Synonym(s)=adenosine phosphate isopentenyltransferase 7%2C isopentenyltransferase 7;Note=tRNA isopentenyltransferase family protein.;Transcript_evidence=AK071216 (DDBJ%2C Best hit);ORF_evidence=Q33CD3 (UniProt);GO=Biological Process: tRNA processing (GO:0008033),Molecular Function: ATP binding (GO:0005524);InterPro=tRNA isopentenyltransferase (IPR002627);NIAS_FLcDNA=J023083F11;Oryzabase=6177;Expression=AK071216;TENOR=Os05t0551700-01;KEGG=Os05t0551700-01 (EC:2.5.1.75)
Chr05	irgsp1_rep	five_prime_UTR	27424473	27424795	.	-	.	Parent=Os05t0551700-01
Chr05	irgsp1_rep	CDS	27423390	27424472	.	-	0	Parent=Os05t0551700-01
Chr05	irgsp1_rep	three_prime_UTR	27423027	27423389	.	-	.	Parent=Os05t0551700-01
Chr05	irgsp1_rep	mRNA	27440762	27445944	.	+	.	ID=Os05t0551801-01;Name=Os05t0551801-01;Locus_id=Os05g0551801;Note=Hypothetical gene.;Transcript_evidence=AK242474 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J080303D01;TENOR=Os05t0551801-01;KEGG=Os05t0551801-01
Chr05	irgsp1_rep	five_prime_UTR	27440762	27441125	.	+	.	Parent=Os05t0551801-01
Chr05	irgsp1_rep	five_prime_UTR	27441585	27441757	.	+	.	Parent=Os05t0551801-01
Chr05	irgsp1_rep	five_prime_UTR	27441834	27441923	.	+	.	Parent=Os05t0551801-01
Chr05	irgsp1_rep	five_prime_UTR	27442380	27442439	.	+	.	Parent=Os05t0551801-01
Chr05	irgsp1_rep	five_prime_UTR	27442555	27442847	.	+	.	Parent=Os05t0551801-01
Chr05	irgsp1_rep	five_prime_UTR	27442925	27443081	.	+	.	Parent=Os05t0551801-01
Chr05	irgsp1_rep	five_prime_UTR	27443241	27443585	.	+	.	Parent=Os05t0551801-01
Chr05	irgsp1_rep	five_prime_UTR	27444214	27444344	.	+	.	Parent=Os05t0551801-01
Chr05	irgsp1_rep	five_prime_UTR	27444443	27444920	.	+	.	Parent=Os05t0551801-01
Chr05	irgsp1_rep	five_prime_UTR	27445141	27445165	.	+	.	Parent=Os05t0551801-01
Chr05	irgsp1_rep	CDS	27445166	27445912	.	+	0	Parent=Os05t0551801-01
Chr05	irgsp1_rep	three_prime_UTR	27445913	27445944	.	+	.	Parent=Os05t0551801-01
Chr05	irgsp1_rep	mRNA	27441786	27445901	.	-	.	ID=Os05t0551900-00;Name=Os05t0551900-00;Locus_id=Os05g0551900;Note=Similar to EMB1865 (embryo defective 1865)%3B RNA binding.;Transcript_evidence=tplb0041d05 (Wheat FLcDNA);ORF_evidence=NP_188468.1 (RefSeq);GO=Molecular Function: RNA binding (GO:0003723);InterPro=RNA-binding%2C CRM domain (IPR001890);Oryzabase=23500;TENOR=Os05t0551900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	27445888	27445901	.	-	.	Parent=Os05t0551900-00
Chr05	irgsp1_rep	CDS	27445141	27445887	.	-	0	Parent=Os05t0551900-00
Chr05	irgsp1_rep	CDS	27444443	27444920	.	-	0	Parent=Os05t0551900-00
Chr05	irgsp1_rep	CDS	27444214	27444344	.	-	2	Parent=Os05t0551900-00
Chr05	irgsp1_rep	CDS	27443241	27443585	.	-	0	Parent=Os05t0551900-00
Chr05	irgsp1_rep	CDS	27442925	27443081	.	-	0	Parent=Os05t0551900-00
Chr05	irgsp1_rep	CDS	27442555	27442847	.	-	2	Parent=Os05t0551900-00
Chr05	irgsp1_rep	CDS	27442380	27442439	.	-	0	Parent=Os05t0551900-00
Chr05	irgsp1_rep	CDS	27441786	27441923	.	-	0	Parent=Os05t0551900-00
Chr05	irgsp1_rep	mRNA	27446932	27447516	.	-	.	ID=Os05t0552000-00;Name=Os05t0552000-00;Locus_id=Os05g0552000;Note=Conserved hypothetical protein.;Transcript_evidence=CT836376 (DDBJ%2C Best hit);ORF_evidence=NP_001174515.1 (RefSeq);TENOR=Os05t0552000-00;KEGG=Os05t0552000-00
Chr05	irgsp1_rep	five_prime_UTR	27447428	27447516	.	-	.	Parent=Os05t0552000-00
Chr05	irgsp1_rep	CDS	27447101	27447427	.	-	0	Parent=Os05t0552000-00
Chr05	irgsp1_rep	three_prime_UTR	27446932	27447100	.	-	.	Parent=Os05t0552000-00
Chr05	irgsp1_rep	mRNA	27449467	27454969	.	-	.	ID=Os05t0552100-01;Name=Os05t0552100-01;Locus_id=Os05g0552100;Note=Conserved hypothetical protein.;Transcript_evidence=AK101673 (DDBJ%2C Best hit);ORF_evidence=A2Y780 (UniProt);NIAS_FLcDNA=J033058D22;Expression=AK101673;TENOR=Os05t0552100-01;KEGG=Os05t0552100-01
Chr05	irgsp1_rep	five_prime_UTR	27454588	27454969	.	-	.	Parent=Os05t0552100-01
Chr05	irgsp1_rep	five_prime_UTR	27454358	27454467	.	-	.	Parent=Os05t0552100-01
Chr05	irgsp1_rep	five_prime_UTR	27452286	27452356	.	-	.	Parent=Os05t0552100-01
Chr05	irgsp1_rep	CDS	27450860	27452285	.	-	0	Parent=Os05t0552100-01
Chr05	irgsp1_rep	CDS	27450629	27450654	.	-	2	Parent=Os05t0552100-01
Chr05	irgsp1_rep	CDS	27449675	27450361	.	-	0	Parent=Os05t0552100-01
Chr05	irgsp1_rep	three_prime_UTR	27449467	27449674	.	-	.	Parent=Os05t0552100-01
Chr05	irgsp1_rep	mRNA	27457526	27458747	.	-	.	ID=Os05t0552200-01;Name=Os05t0552200-01;Locus_id=Os05g0552200;Note=Glycosyl transferase%2C family 31 protein.;Transcript_evidence=AK064636 (DDBJ%2C Best hit);ORF_evidence=A2Y781 (UniProt);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Glycosyl transferase%2C family 31 (IPR002659);NIAS_FLcDNA=002-114-A06;Expression=AK064636;TENOR=Os05t0552200-01;KEGG=Os05t0552200-01
Chr05	irgsp1_rep	five_prime_UTR	27458731	27458747	.	-	.	Parent=Os05t0552200-01
Chr05	irgsp1_rep	CDS	27457657	27458730	.	-	0	Parent=Os05t0552200-01
Chr05	irgsp1_rep	three_prime_UTR	27457526	27457656	.	-	.	Parent=Os05t0552200-01
Chr05	irgsp1_rep	mRNA	27459362	27461861	.	-	.	ID=Os05t0552300-02;Name=Os05t0552300-02;Locus_id=Os05g0552300;Oryzabase Gene Symbol Synonym(s)=OsWD40-122%2C OsRACK1B%2C RACK1B;Oryzabase Gene Name Synonym(s)=G-protein beta-subunit-like polypeptide%2C receptor for activated C kinase 1B;Note=Similar to Guanine nucleotide-binding protein beta subunit-like protein (GPB-LR) (RWD).;Transcript_evidence=AK062179 (DDBJ%2C Best hit),AK065272 (DDBJ%2C Best hit),AK121567 (DDBJ%2C Best hit);ORF_evidence=Q6L4F8 (UniProt);NIAS_FLcDNA=001-046-D07,J013002L07,J033034P13;Oryzabase=10803;Expression=AK062179;TENOR=Os05t0552300-02;KEGG=Os05t0552300-02
Chr05	irgsp1_rep	five_prime_UTR	27461788	27461861	.	-	.	Parent=Os05t0552300-02
Chr05	irgsp1_rep	CDS	27460894	27461787	.	-	0	Parent=Os05t0552300-02
Chr05	irgsp1_rep	CDS	27459686	27459802	.	-	0	Parent=Os05t0552300-02
Chr05	irgsp1_rep	three_prime_UTR	27459362	27459685	.	-	.	Parent=Os05t0552300-02
Chr05	irgsp1_rep	mRNA	27463260	27465297	.	+	.	ID=Os05t0552400-01;Name=Os05t0552400-01;Locus_id=Os05g0552400;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK107568 (DDBJ%2C Best hit);ORF_evidence=NP_001148808.1 (RefSeq);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-CH-type (IPR011016),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Protein of unknown function DUF3675 (IPR022143);NIAS_FLcDNA=002-130-C11;Expression=AK107568;TENOR=Os05t0552400-01;KEGG=Os05t0552400-01
Chr05	irgsp1_rep	five_prime_UTR	27463260	27463323	.	+	.	Parent=Os05t0552400-01
Chr05	irgsp1_rep	five_prime_UTR	27463517	27463518	.	+	.	Parent=Os05t0552400-01
Chr05	irgsp1_rep	CDS	27463519	27463752	.	+	0	Parent=Os05t0552400-01
Chr05	irgsp1_rep	CDS	27463989	27464060	.	+	0	Parent=Os05t0552400-01
Chr05	irgsp1_rep	CDS	27464161	27464228	.	+	0	Parent=Os05t0552400-01
Chr05	irgsp1_rep	CDS	27464311	27464437	.	+	1	Parent=Os05t0552400-01
Chr05	irgsp1_rep	CDS	27464518	27464598	.	+	0	Parent=Os05t0552400-01
Chr05	irgsp1_rep	CDS	27464696	27464788	.	+	0	Parent=Os05t0552400-01
Chr05	irgsp1_rep	CDS	27464910	27464993	.	+	0	Parent=Os05t0552400-01
Chr05	irgsp1_rep	three_prime_UTR	27464994	27465297	.	+	.	Parent=Os05t0552400-01
Chr05	irgsp1_rep	mRNA	27474102	27479077	.	-	.	ID=Os05t0552500-01;Name=Os05t0552500-01;Locus_id=Os05g0552500;Oryzabase Gene Symbol Synonym(s)=OsQSOXL1;Oryzabase Gene Name Synonym(s)=QSOX-like protein 1%2C quiescin-sulfhydryl oxidase-like protein 1;Note=Similar to Sulfhydryl oxidase 1.;Transcript_evidence=AK105695 (DDBJ%2C Best hit);ORF_evidence=Q6AUC6 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454);InterPro=Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766),Thioredoxin%2C conserved site (IPR017937);NIAS_FLcDNA=001-201-C09;Oryzabase=14068;TENOR=Os05t0552500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	27478972	27479077	.	-	.	Parent=Os05t0552500-01
Chr05	irgsp1_rep	CDS	27478748	27478971	.	-	0	Parent=Os05t0552500-01
Chr05	irgsp1_rep	CDS	27477378	27477402	.	-	1	Parent=Os05t0552500-01
Chr05	irgsp1_rep	CDS	27477178	27477270	.	-	0	Parent=Os05t0552500-01
Chr05	irgsp1_rep	CDS	27476747	27476861	.	-	0	Parent=Os05t0552500-01
Chr05	irgsp1_rep	CDS	27476435	27476463	.	-	2	Parent=Os05t0552500-01
Chr05	irgsp1_rep	three_prime_UTR	27476431	27476434	.	-	.	Parent=Os05t0552500-01
Chr05	irgsp1_rep	three_prime_UTR	27476253	27476321	.	-	.	Parent=Os05t0552500-01
Chr05	irgsp1_rep	three_prime_UTR	27476091	27476164	.	-	.	Parent=Os05t0552500-01
Chr05	irgsp1_rep	three_prime_UTR	27475863	27476016	.	-	.	Parent=Os05t0552500-01
Chr05	irgsp1_rep	three_prime_UTR	27475381	27475421	.	-	.	Parent=Os05t0552500-01
Chr05	irgsp1_rep	three_prime_UTR	27475118	27475264	.	-	.	Parent=Os05t0552500-01
Chr05	irgsp1_rep	three_prime_UTR	27474599	27475036	.	-	.	Parent=Os05t0552500-01
Chr05	irgsp1_rep	three_prime_UTR	27474102	27474453	.	-	.	Parent=Os05t0552500-01
Chr05	irgsp1_rep	mRNA	27474102	27479044	.	-	.	ID=Os05t0552500-02;Name=Os05t0552500-02;Locus_id=Os05g0552500;Oryzabase Gene Symbol Synonym(s)=OsQSOXL1;Oryzabase Gene Name Synonym(s)=QSOX-like protein 1%2C quiescin-sulfhydryl oxidase-like protein 1;Note=Similar to thiol oxidoreductase.;Transcript_evidence=AK121660 (DDBJ%2C Best hit);ORF_evidence=Q6AUC6 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: thiol oxidase activity (GO:0016972);InterPro=Erv1/Alr (IPR006863),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766),ERV/ALR sulphydryl oxidase (IPR017905),Thioredoxin%2C conserved site (IPR017937);NIAS_FLcDNA=J033064B04;Oryzabase=14068;Expression=AK121660;TENOR=Os05t0552500-02;KEGG=Os05t0552500-02
Chr05	irgsp1_rep	five_prime_UTR	27478972	27479044	.	-	.	Parent=Os05t0552500-02
Chr05	irgsp1_rep	CDS	27478748	27478971	.	-	0	Parent=Os05t0552500-02
Chr05	irgsp1_rep	CDS	27477378	27477402	.	-	1	Parent=Os05t0552500-02
Chr05	irgsp1_rep	CDS	27477178	27477270	.	-	0	Parent=Os05t0552500-02
Chr05	irgsp1_rep	CDS	27476680	27476861	.	-	0	Parent=Os05t0552500-02
Chr05	irgsp1_rep	CDS	27476431	27476503	.	-	1	Parent=Os05t0552500-02
Chr05	irgsp1_rep	CDS	27476253	27476321	.	-	0	Parent=Os05t0552500-02
Chr05	irgsp1_rep	CDS	27476091	27476164	.	-	0	Parent=Os05t0552500-02
Chr05	irgsp1_rep	CDS	27475863	27476016	.	-	1	Parent=Os05t0552500-02
Chr05	irgsp1_rep	CDS	27475381	27475421	.	-	0	Parent=Os05t0552500-02
Chr05	irgsp1_rep	CDS	27475118	27475264	.	-	1	Parent=Os05t0552500-02
Chr05	irgsp1_rep	CDS	27474599	27475036	.	-	1	Parent=Os05t0552500-02
Chr05	irgsp1_rep	CDS	27474432	27474453	.	-	1	Parent=Os05t0552500-02
Chr05	irgsp1_rep	three_prime_UTR	27474102	27474431	.	-	.	Parent=Os05t0552500-02
Chr05	irgsp1_rep	mRNA	27482964	27483916	.	-	.	ID=Os05t0552550-00;Name=Os05t0552550-00;Locus_id=Os05g0552550;Note=Hypothetical gene.;Transcript_evidence=EU945402 (DDBJ);ORF_evidence=longestORF;GO=Molecular Function: transferase activity (GO:0016740);InterPro=Hexapeptide transferase%2C conserved site (IPR018357);TENOR=Os05t0552550-00;KEGG=Os05t0552550-00
Chr05	irgsp1_rep	five_prime_UTR	27483674	27483916	.	-	.	Parent=Os05t0552550-00
Chr05	irgsp1_rep	CDS	27483089	27483673	.	-	0	Parent=Os05t0552550-00
Chr05	irgsp1_rep	three_prime_UTR	27482964	27483088	.	-	.	Parent=Os05t0552550-00
Chr05	irgsp1_rep	mRNA	27482292	27483916	.	+	.	ID=Os05t0552600-00;Name=Os05t0552600-00;Locus_id=Os05g0552600;Oryzabase Gene Name Synonym(s)=Extensin family protein;Note=Similar to root cap periphery gene2.;Transcript_evidence=BT042336 (DDBJ);ORF_evidence=NP_188574.2 (RefSeq);InterPro=Root cap (IPR009646);Oryzabase=21939;TENOR=Os05t0552600-00;KEGG=Os05t0552600-00
Chr05	irgsp1_rep	CDS	27482292	27483048	.	+	0	Parent=Os05t0552600-00
Chr05	irgsp1_rep	CDS	27483138	27483913	.	+	2	Parent=Os05t0552600-00
Chr05	irgsp1_rep	three_prime_UTR	27483914	27483916	.	+	.	Parent=Os05t0552600-00
Chr05	irgsp1_rep	mRNA	27485811	27487593	.	-	.	ID=Os05t0552700-01;Name=Os05t0552700-01;Locus_id=Os05g0552700;CGSNL Gene Symbol=UGT84D1;CGSNL Gene Name=UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 84D1;Oryzabase Gene Symbol Synonym(s)=OsUGT84D1;Oryzabase Gene Name Synonym(s)=UDP-glucose-dependent glycosyltransferase 84D1;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK108674 (DDBJ%2C Best hit);ORF_evidence=NP_001152529.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=002-148-H12;Oryzabase=21824;Expression=AK108674;TENOR=Os05t0552700-01;KEGG=Os05t0552700-01
Chr05	irgsp1_rep	five_prime_UTR	27487580	27487593	.	-	.	Parent=Os05t0552700-01
Chr05	irgsp1_rep	CDS	27486011	27487579	.	-	0	Parent=Os05t0552700-01
Chr05	irgsp1_rep	three_prime_UTR	27485811	27486010	.	-	.	Parent=Os05t0552700-01
Chr05	irgsp1_rep	mRNA	27498776	27499586	.	-	.	ID=Os05t0552800-01;Name=Os05t0552800-01;Locus_id=Os05g0552800;Note=Conserved hypothetical protein.;Transcript_evidence=AK243110 (DDBJ%2C Best hit);ORF_evidence=B8AWF6 (UniProt);NIAS_FLcDNA=J100026I16;TENOR=Os05t0552800-01;KEGG=Os05t0552800-01
Chr05	irgsp1_rep	five_prime_UTR	27499482	27499586	.	-	.	Parent=Os05t0552800-01
Chr05	irgsp1_rep	CDS	27498954	27499481	.	-	0	Parent=Os05t0552800-01
Chr05	irgsp1_rep	three_prime_UTR	27498776	27498953	.	-	.	Parent=Os05t0552800-01
Chr05	irgsp1_rep	mRNA	27504934	27509339	.	-	.	ID=Os05t0552900-01;Name=Os05t0552900-01;Locus_id=Os05g0552900;Note=MAP65/ASE1 family protein.;Transcript_evidence=AK102095 (DDBJ%2C Best hit);ORF_evidence=NP_199973.1 (RefSeq);InterPro=Microtubule-associated protein%2C MAP65/ASE1-type (IPR007145);NIAS_FLcDNA=J033083E22;Expression=AK102095;TENOR=Os05t0552900-01;KEGG=Os05t0552900-01
Chr05	irgsp1_rep	five_prime_UTR	27509339	27509339	.	-	.	Parent=Os05t0552900-01
Chr05	irgsp1_rep	CDS	27509187	27509338	.	-	0	Parent=Os05t0552900-01
Chr05	irgsp1_rep	CDS	27508997	27509090	.	-	1	Parent=Os05t0552900-01
Chr05	irgsp1_rep	CDS	27508698	27508904	.	-	0	Parent=Os05t0552900-01
Chr05	irgsp1_rep	CDS	27507819	27508067	.	-	0	Parent=Os05t0552900-01
Chr05	irgsp1_rep	CDS	27507506	27507715	.	-	0	Parent=Os05t0552900-01
Chr05	irgsp1_rep	CDS	27507270	27507425	.	-	0	Parent=Os05t0552900-01
Chr05	irgsp1_rep	CDS	27506996	27507155	.	-	0	Parent=Os05t0552900-01
Chr05	irgsp1_rep	CDS	27506405	27506556	.	-	2	Parent=Os05t0552900-01
Chr05	irgsp1_rep	CDS	27506233	27506320	.	-	0	Parent=Os05t0552900-01
Chr05	irgsp1_rep	CDS	27506067	27506140	.	-	2	Parent=Os05t0552900-01
Chr05	irgsp1_rep	CDS	27505900	27505974	.	-	0	Parent=Os05t0552900-01
Chr05	irgsp1_rep	CDS	27505611	27505812	.	-	0	Parent=Os05t0552900-01
Chr05	irgsp1_rep	CDS	27505138	27505514	.	-	2	Parent=Os05t0552900-01
Chr05	irgsp1_rep	three_prime_UTR	27504934	27505137	.	-	.	Parent=Os05t0552900-01
Chr05	irgsp1_rep	mRNA	27511273	27513335	.	-	.	ID=Os05t0553000-01;Name=Os05t0553000-01;Locus_id=Os05g0553000;Oryzabase Gene Symbol Synonym(s)=RMtATPb%2C atpB%2C AtpB;Oryzabase Gene Name Synonym(s)=mitochondrial ATP synthase b%2C "mitochondrial ATP synthase complex%2C beta subunit"%2C mitochondrial F1-ATPase beta subunit%2C H+-transporting ATP synthase beta chain%2C beta subunit of ATP synthase%2C ATP synthase beta subunit;Note=Similar to ATP synthase subunit beta%2C mitochondrial.;Transcript_evidence=AK071143 (DDBJ%2C Best hit);ORF_evidence=Q01859 (UniProt);GO=Biological Process: ATP catabolic process (GO:0006200),Biological Process: ATP biosynthetic process (GO:0006754),Biological Process: ATP synthesis coupled proton transport (GO:0015986),Biological Process: proton transport (GO:0015992),Biological Process: ATP metabolic process (GO:0046034),Cellular Component: mitochondrial proton-transporting ATP synthase complex%2C catalytic core F(1) (GO:0000275),Cellular Component: proton-transporting two-sector ATPase complex (GO:0016469),Cellular Component: proton-transporting ATP synthase complex%2C catalytic core F(1) (GO:0045261),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrogen-exporting ATPase activity%2C phosphorylative mechanism (GO:0008553),Molecular Function: ATPase activity (GO:0016887),Molecular Function: hydrogen ion transporting ATP synthase activity%2C rotational mechanism (GO:0046933),Molecular Function: proton-transporting ATPase activity%2C rotational mechanism (GO:0046961);InterPro=ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C nucleotide-binding domain (IPR000194),ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C N-terminal (IPR004100),ATPase%2C F1 complex%2C beta subunit (IPR005722),ATPase%2C F1/A1 complex%2C alpha/beta subunit%2C N-terminal (IPR018118),ATP synthase%2C F1 beta subunit (IPR020971);NIAS_FLcDNA=J023081F24;Oryzabase=14099;TENOR=Os05t0553000-01
Chr05	irgsp1_rep	five_prime_UTR	27513228	27513335	.	-	.	Parent=Os05t0553000-01
Chr05	irgsp1_rep	CDS	27512766	27513227	.	-	0	Parent=Os05t0553000-01
Chr05	irgsp1_rep	CDS	27512076	27512151	.	-	0	Parent=Os05t0553000-01
Chr05	irgsp1_rep	CDS	27511883	27511971	.	-	2	Parent=Os05t0553000-01
Chr05	irgsp1_rep	CDS	27511652	27511769	.	-	0	Parent=Os05t0553000-01
Chr05	irgsp1_rep	CDS	27511462	27511565	.	-	2	Parent=Os05t0553000-01
Chr05	irgsp1_rep	CDS	27511273	27511385	.	-	0	Parent=Os05t0553000-01
Chr05	irgsp1_rep	mRNA	27509817	27513277	.	-	.	ID=Os05t0553000-02;Name=Os05t0553000-02;Locus_id=Os05g0553000;Oryzabase Gene Symbol Synonym(s)=RMtATPb%2C atpB%2C AtpB;Oryzabase Gene Name Synonym(s)=mitochondrial ATP synthase b%2C "mitochondrial ATP synthase complex%2C beta subunit"%2C mitochondrial F1-ATPase beta subunit%2C H+-transporting ATP synthase beta chain%2C beta subunit of ATP synthase%2C ATP synthase beta subunit;Note=ATP synthase beta chain%2C mitochondrial precursor (EC 3.6.3.14).;Transcript_evidence=AK061681 (DDBJ%2C Best hit);ORF_evidence=Q01859 (UniProt);GO=Biological Process: ATP catabolic process (GO:0006200),Biological Process: ATP biosynthetic process (GO:0006754),Biological Process: ATP synthesis coupled proton transport (GO:0015986),Biological Process: ATP hydrolysis coupled proton transport (GO:0015991),Biological Process: proton transport (GO:0015992),Biological Process: ATP metabolic process (GO:0046034),Cellular Component: mitochondrial proton-transporting ATP synthase complex%2C catalytic core F(1) (GO:0000275),Cellular Component: proton-transporting two-sector ATPase complex (GO:0016469),Cellular Component: proton-transporting two-sector ATPase complex%2C catalytic domain (GO:0033178),Cellular Component: proton-transporting ATP synthase complex%2C catalytic core F(1) (GO:0045261),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrogen-exporting ATPase activity%2C phosphorylative mechanism (GO:0008553),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C catalyzing transmembrane movement of substances (GO:0016820),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: hydrogen ion transporting ATP synthase activity%2C rotational mechanism (GO:0046933),Molecular Function: proton-transporting ATPase activity%2C rotational mechanism (GO:0046961);InterPro=ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C nucleotide-binding domain (IPR000194),ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C C-terminal (IPR000793),ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C N-terminal (IPR004100),ATPase%2C F1 complex%2C beta subunit (IPR005722),ATPase%2C F1/A1 complex%2C alpha/beta subunit%2C N-terminal (IPR018118),ATPase%2C alpha/beta subunit%2C nucleotide-binding domain%2C active site (IPR020003),ATP synthase%2C F1 beta subunit (IPR020971),ATPase%2C F1 complex beta subunit/V1 complex%2C C-terminal (IPR024034);NIAS_FLcDNA=001-037-A03;Oryzabase=14099;Expression=AK061681;TENOR=Os05t0553000-02;KEGG=Os05t0553000-02 (EC:3.6.3.14)
Chr05	irgsp1_rep	five_prime_UTR	27513228	27513277	.	-	.	Parent=Os05t0553000-02
Chr05	irgsp1_rep	CDS	27512766	27513227	.	-	0	Parent=Os05t0553000-02
Chr05	irgsp1_rep	CDS	27512076	27512151	.	-	0	Parent=Os05t0553000-02
Chr05	irgsp1_rep	CDS	27511883	27511971	.	-	2	Parent=Os05t0553000-02
Chr05	irgsp1_rep	CDS	27511652	27511769	.	-	0	Parent=Os05t0553000-02
Chr05	irgsp1_rep	CDS	27511462	27511565	.	-	2	Parent=Os05t0553000-02
Chr05	irgsp1_rep	CDS	27511227	27511385	.	-	0	Parent=Os05t0553000-02
Chr05	irgsp1_rep	CDS	27510866	27511090	.	-	0	Parent=Os05t0553000-02
Chr05	irgsp1_rep	CDS	27510483	27510794	.	-	0	Parent=Os05t0553000-02
Chr05	irgsp1_rep	CDS	27510081	27510194	.	-	0	Parent=Os05t0553000-02
Chr05	irgsp1_rep	three_prime_UTR	27509817	27510080	.	-	.	Parent=Os05t0553000-02
Chr05	irgsp1_rep	mRNA	27509901	27513233	.	+	.	ID=Os05t0553150-00;Name=Os05t0553150-00;Locus_id=Os05g0553150;Note=Hypothetical protein.;Transcript_evidence=tplb0039e03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0553150-00
Chr05	irgsp1_rep	five_prime_UTR	27509901	27510193	.	+	.	Parent=Os05t0553150-00
Chr05	irgsp1_rep	five_prime_UTR	27510482	27510815	.	+	.	Parent=Os05t0553150-00
Chr05	irgsp1_rep	five_prime_UTR	27510886	27511086	.	+	.	Parent=Os05t0553150-00
Chr05	irgsp1_rep	five_prime_UTR	27511223	27511389	.	+	.	Parent=Os05t0553150-00
Chr05	irgsp1_rep	five_prime_UTR	27511466	27511563	.	+	.	Parent=Os05t0553150-00
Chr05	irgsp1_rep	five_prime_UTR	27511650	27511745	.	+	.	Parent=Os05t0553150-00
Chr05	irgsp1_rep	five_prime_UTR	27511864	27511963	.	+	.	Parent=Os05t0553150-00
Chr05	irgsp1_rep	five_prime_UTR	27512068	27512149	.	+	.	Parent=Os05t0553150-00
Chr05	irgsp1_rep	five_prime_UTR	27512764	27512832	.	+	.	Parent=Os05t0553150-00
Chr05	irgsp1_rep	CDS	27512833	27513233	.	+	0	Parent=Os05t0553150-00
Chr05	irgsp1_rep	mRNA	27521078	27521570	.	+	.	ID=Os05t0553300-01;Name=Os05t0553300-01;Locus_id=Os05g0553300;Note=Conserved hypothetical protein.;Transcript_evidence=AK107804 (DDBJ%2C Best hit);ORF_evidence=Q6L587 (UniProt);NIAS_FLcDNA=002-133-E06;TENOR=Os05t0553300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	27521078	27521078	.	+	.	Parent=Os05t0553300-01
Chr05	irgsp1_rep	CDS	27521079	27521231	.	+	0	Parent=Os05t0553300-01
Chr05	irgsp1_rep	three_prime_UTR	27521232	27521570	.	+	.	Parent=Os05t0553300-01
Chr05	irgsp1_rep	mRNA	27524786	27526242	.	-	.	ID=Os05t0553400-01;Name=Os05t0553400-01;Locus_id=Os05g0553400;RAP-DB Gene Symbol Synonym(s)=OsMYB55%2C OsPL;RAP-DB Gene Name Synonym(s)=R2R3-MYB Transcription Factor 55%2C purple leaf;CGSNL Gene Symbol=PL;CGSNL Gene Name=PURPLE LEAF;Oryzabase Gene Symbol Synonym(s)=OsMYB55%2C OsMYB-2%2C MYB55%2C MYB-2%2C OsPL;Oryzabase Gene Name Synonym(s)=R2R3-MYB Transcription Factor 55%2C R2R3-MYB Transcription Factor OsMYB55%2C purple leaf;Note=R2R3-MYB transcription factor%2C Tolerance to high temperature%2C Modulation of amino acid metabolism%2C Anthocyanin synthesis%2C Hormonal signaling;Transcript_evidence=AK108452;ORF_evidence=A0A0P0WQQ7;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeobox-like domain superfamily (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930);NIAS_FLcDNA=002-143-C10;Manual Curation=July 16%2C 2020;Literature_PMID=30858135,23251677;Oryzabase=11680;Expression=AK108452;TENOR=Os05t0553400-01;KEGG=Os05t0553400-01
Chr05	irgsp1_rep	five_prime_UTR	27526085	27526242	.	-	.	Parent=Os05t0553400-01
Chr05	irgsp1_rep	CDS	27525949	27526084	.	-	0	Parent=Os05t0553400-01
Chr05	irgsp1_rep	CDS	27525716	27525845	.	-	2	Parent=Os05t0553400-01
Chr05	irgsp1_rep	CDS	27525020	27525623	.	-	1	Parent=Os05t0553400-01
Chr05	irgsp1_rep	three_prime_UTR	27524786	27525019	.	-	.	Parent=Os05t0553400-01
Chr05	irgsp1_rep	mRNA	27530255	27533764	.	+	.	ID=Os05t0553700-01;Name=Os05t0553700-01;Locus_id=Os05g0553700;RAP-DB Gene Symbol Synonym(s)=OsSYP71;CGSNL Gene Symbol=SYP71;Oryzabase Gene Symbol Synonym(s)=OsSYP71;Note=Qc-SNARE (soluble N-ethylmaleimide-sensitive factor attachment protein receptor) protein%2C Tolerance to oxidative stress%2C Resistance to rice blast;Transcript_evidence=AK103396,AK099747,AK101606;ORF_evidence=A0A0P0WQ70;GO=Biological Process: intracellular protein transport (GO:0006886),Molecular Function: SNAP receptor activity (GO:0005484),Cellular Component: membrane (GO:0016020);InterPro=Target SNARE coiled-coil homology domain (IPR000727),Syntaxin/epimorphin%2C conserved site (IPR006012);NIAS_FLcDNA=J033127N02,J013091N20,J033051M14;Manual Curation=July 16%2C 2020;Literature_PMID=22583826;Oryzabase=11503;TENOR=Os05t0553700-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	27530255	27530397	.	+	.	Parent=Os05t0553700-01
Chr05	irgsp1_rep	CDS	27530398	27530553	.	+	0	Parent=Os05t0553700-01
Chr05	irgsp1_rep	CDS	27530655	27530783	.	+	0	Parent=Os05t0553700-01
Chr05	irgsp1_rep	CDS	27531655	27531820	.	+	0	Parent=Os05t0553700-01
Chr05	irgsp1_rep	CDS	27532513	27532598	.	+	2	Parent=Os05t0553700-01
Chr05	irgsp1_rep	CDS	27532709	27532777	.	+	0	Parent=Os05t0553700-01
Chr05	irgsp1_rep	CDS	27532873	27532917	.	+	0	Parent=Os05t0553700-01
Chr05	irgsp1_rep	CDS	27533021	27533083	.	+	0	Parent=Os05t0553700-01
Chr05	irgsp1_rep	CDS	27533172	27533248	.	+	0	Parent=Os05t0553700-01
Chr05	irgsp1_rep	CDS	27533449	27533464	.	+	1	Parent=Os05t0553700-01
Chr05	irgsp1_rep	three_prime_UTR	27533465	27533764	.	+	.	Parent=Os05t0553700-01
Chr05	irgsp1_rep	mRNA	27534280	27537659	.	+	.	ID=Os05t0553800-01;Name=Os05t0553800-01;Locus_id=Os05g0553800;Note=Similar to Anti-silencing protein-like (Anti-silencing function 1b) (Anti- silencing factor 1-like protein).;Transcript_evidence=AK103746 (DDBJ%2C Best hit);ORF_evidence=B6TL85 (UniProt);GO=Biological Process: Chromatin assembly or disassembly (GO:0006333),Cellular Component: nucleus (GO:0005634);InterPro=Histone chaperone%2C ASF1-like (IPR006818);NIAS_FLcDNA=J033138P03;Expression=AK103746;TENOR=Os05t0553800-01;KEGG=Os05t0553800-01
Chr05	irgsp1_rep	five_prime_UTR	27534280	27534577	.	+	.	Parent=Os05t0553800-01
Chr05	irgsp1_rep	CDS	27534578	27534686	.	+	0	Parent=Os05t0553800-01
Chr05	irgsp1_rep	CDS	27536657	27536772	.	+	2	Parent=Os05t0553800-01
Chr05	irgsp1_rep	CDS	27536963	27537304	.	+	0	Parent=Os05t0553800-01
Chr05	irgsp1_rep	three_prime_UTR	27537305	27537659	.	+	.	Parent=Os05t0553800-01
Chr05	irgsp1_rep	mRNA	27537645	27539310	.	+	.	ID=Os05t0553800-02;Name=Os05t0553800-02;Locus_id=Os05g0553800;Note=Hypothetical conserved gene.;Transcript_evidence=AK242844 (DDBJ%2C Best hit),AK058982 (DDBJ%2C Best hit),AK101196 (DDBJ%2C Best hit);ORF_evidence=Q6Z055 (UniProt);NIAS_FLcDNA=J090071G23,001-020-E01,J033030K07;TENOR=Os05t0553800-02;KEGG=Os05t0553800-02
Chr05	irgsp1_rep	five_prime_UTR	27537645	27537671	.	+	.	Parent=Os05t0553800-02
Chr05	irgsp1_rep	CDS	27537672	27538193	.	+	0	Parent=Os05t0553800-02
Chr05	irgsp1_rep	three_prime_UTR	27538194	27539310	.	+	.	Parent=Os05t0553800-02
Chr05	irgsp1_rep	mRNA	27542128	27545922	.	+	.	ID=Os05t0554000-01;Name=Os05t0554000-01;Locus_id=Os05g0554000;CGSNL Gene Symbol=MATE2;CGSNL Gene Name=MULTIDRUG AND TOXIC COMPOUND EXTRUSION PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsMATE2;Oryzabase Gene Name Synonym(s)=Multidrug and Toxic compound Extrusion protein 2;Note=Similar to cDNA clone:001-123-D07%2C full insert sequence.;Transcript_evidence=AK073902 (DDBJ%2C Best hit);ORF_evidence=B7EXY0 (UniProt);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);NIAS_FLcDNA=J033071I17;Oryzabase=15521;TENOR=Os05t0554000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	27542128	27542229	.	+	.	Parent=Os05t0554000-01
Chr05	irgsp1_rep	CDS	27542230	27542514	.	+	0	Parent=Os05t0554000-01
Chr05	irgsp1_rep	CDS	27543221	27543765	.	+	0	Parent=Os05t0554000-01
Chr05	irgsp1_rep	CDS	27543876	27543962	.	+	1	Parent=Os05t0554000-01
Chr05	irgsp1_rep	CDS	27544055	27544111	.	+	1	Parent=Os05t0554000-01
Chr05	irgsp1_rep	CDS	27544202	27544454	.	+	1	Parent=Os05t0554000-01
Chr05	irgsp1_rep	three_prime_UTR	27544455	27544973	.	+	.	Parent=Os05t0554000-01
Chr05	irgsp1_rep	three_prime_UTR	27545233	27545438	.	+	.	Parent=Os05t0554000-01
Chr05	irgsp1_rep	three_prime_UTR	27545551	27545922	.	+	.	Parent=Os05t0554000-01
Chr05	irgsp1_rep	mRNA	27542128	27545922	.	+	.	ID=Os05t0554000-02;Name=Os05t0554000-02;Locus_id=Os05g0554000;CGSNL Gene Symbol=MATE2;CGSNL Gene Name=MULTIDRUG AND TOXIC COMPOUND EXTRUSION PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsMATE2;Oryzabase Gene Name Synonym(s)=Multidrug and Toxic compound Extrusion protein 2;Note=Similar to predicted protein.;Transcript_evidence=AK105402 (DDBJ%2C Best hit);ORF_evidence=B6U6E4 (UniProt);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);NIAS_FLcDNA=001-123-D07;Oryzabase=15521;Expression=AK105402;TENOR=Os05t0554000-02;KEGG=Os05t0554000-02
Chr05	irgsp1_rep	five_prime_UTR	27542128	27542229	.	+	.	Parent=Os05t0554000-02
Chr05	irgsp1_rep	CDS	27542230	27542514	.	+	0	Parent=Os05t0554000-02
Chr05	irgsp1_rep	CDS	27543221	27543765	.	+	0	Parent=Os05t0554000-02
Chr05	irgsp1_rep	CDS	27543876	27543966	.	+	1	Parent=Os05t0554000-02
Chr05	irgsp1_rep	three_prime_UTR	27543967	27544111	.	+	.	Parent=Os05t0554000-02
Chr05	irgsp1_rep	three_prime_UTR	27544202	27545922	.	+	.	Parent=Os05t0554000-02
Chr05	irgsp1_rep	mRNA	27542126	27546073	.	+	.	ID=Os05t0554000-03;Name=Os05t0554000-03;Locus_id=Os05g0554000;RAP-DB Gene Symbol Synonym(s)=OsMATE2;RAP-DB Gene Name Synonym(s)=Multidrug and Toxic compound Extrusion protein 2;CGSNL Gene Symbol=MATE2;CGSNL Gene Name=MULTIDRUG AND TOXIC COMPOUND EXTRUSION PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsMATE2;Oryzabase Gene Name Synonym(s)=Multidrug and Toxic compound Extrusion protein 2;Note=Multidrug and toxic compound extrusion (MATE) protein family transporter%2C Arsenic stress response%2C Regulation of plant growth and development%2C Disease resistance;Transcript_evidence=KC631818.1 (IR64),Inferred from literature;ORF_evidence=R4SEW1;GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297),Cellular Component: membrane (GO:0016020);InterPro=Multi antimicrobial extrusion protein (IPR002528);Manual Curation=August 22%2C 2018;Literature_PMID=30121733,24492654;Oryzabase=15521;Subcellular location=plasma membrane (GO:0005886)
Chr05	irgsp1_rep	five_prime_UTR	27542126	27542229	.	+	.	Parent=Os05t0554000-03
Chr05	irgsp1_rep	CDS	27542230	27542514	.	+	0	Parent=Os05t0554000-03
Chr05	irgsp1_rep	CDS	27543221	27543765	.	+	0	Parent=Os05t0554000-03
Chr05	irgsp1_rep	CDS	27543876	27543962	.	+	1	Parent=Os05t0554000-03
Chr05	irgsp1_rep	CDS	27544055	27544111	.	+	1	Parent=Os05t0554000-03
Chr05	irgsp1_rep	CDS	27544202	27544440	.	+	1	Parent=Os05t0554000-03
Chr05	irgsp1_rep	CDS	27545233	27545438	.	+	2	Parent=Os05t0554000-03
Chr05	irgsp1_rep	CDS	27545551	27545634	.	+	0	Parent=Os05t0554000-03
Chr05	irgsp1_rep	three_prime_UTR	27545635	27546073	.	+	.	Parent=Os05t0554000-03
Chr05	irgsp1_rep	mRNA	27546982	27548785	.	-	.	ID=Os05t0554100-01;Name=Os05t0554100-01;Locus_id=Os05g0554100;Note=Ribosomal protein L7/L12 family protein.;Transcript_evidence=AK073023 (DDBJ%2C Best hit),AK101756 (DDBJ%2C Best hit);ORF_evidence=NP_001152464.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L7/L12%2C C-terminal (IPR013823),Ribosomal protein L7/L12%2C C-terminal/adaptor protein ClpS-like (IPR014719),Ribosomal protein L7/L12%2C chloroplast (IPR015608);NIAS_FLcDNA=J033000J03,J033063K17;Expression=AK073023;TENOR=Os05t0554100-01;KEGG=Os05t0554100-01
Chr05	irgsp1_rep	five_prime_UTR	27548725	27548785	.	-	.	Parent=Os05t0554100-01
Chr05	irgsp1_rep	CDS	27548128	27548724	.	-	0	Parent=Os05t0554100-01
Chr05	irgsp1_rep	three_prime_UTR	27548102	27548127	.	-	.	Parent=Os05t0554100-01
Chr05	irgsp1_rep	three_prime_UTR	27546982	27547501	.	-	.	Parent=Os05t0554100-01
Chr05	irgsp1_rep	mRNA	27552789	27558220	.	+	.	ID=Os05t0554400-01;Name=Os05t0554400-01;Locus_id=Os05g0554400;RAP-DB Gene Symbol Synonym(s)=ES5%2C SUI2;RAP-DB Gene Name Synonym(s)=early leaf senescence 5%2C Shortened Uppermost Internode 2;CGSNL Gene Symbol=SUI2;CGSNL Gene Name=SHORTENED UPPERMOST INTERNODE 2;Oryzabase Gene Symbol Synonym(s)=OsSUI2%2C ES5%2C OsES5;Oryzabase Gene Name Synonym(s)=Shortened Uppermost Internode 2%2C early leaf senescence 5;Note=Phosphatidylserine synthase%2C Control of leaf senescence;Transcript_evidence=AK107427;ORF_evidence=Q6I628-2;GO=Biological Process: phosphatidylserine biosynthetic process (GO:0006659);InterPro=Phosphatidyl serine synthase (IPR004277);NIAS_FLcDNA=002-128-A03;Manual Curation=January 14%2C 2020;Literature_PMID=31919641,22956125;Oryzabase=19639;Expression=AK107427;TENOR=Os05t0554400-01;KEGG=Os05t0554400-01 (EC:2.7.8.-)
Chr05	irgsp1_rep	five_prime_UTR	27552789	27552958	.	+	.	Parent=Os05t0554400-01
Chr05	irgsp1_rep	five_prime_UTR	27553094	27553178	.	+	.	Parent=Os05t0554400-01
Chr05	irgsp1_rep	CDS	27553179	27553333	.	+	0	Parent=Os05t0554400-01
Chr05	irgsp1_rep	CDS	27554049	27554114	.	+	1	Parent=Os05t0554400-01
Chr05	irgsp1_rep	CDS	27554295	27554354	.	+	1	Parent=Os05t0554400-01
Chr05	irgsp1_rep	CDS	27554749	27554839	.	+	1	Parent=Os05t0554400-01
Chr05	irgsp1_rep	CDS	27555217	27555271	.	+	0	Parent=Os05t0554400-01
Chr05	irgsp1_rep	CDS	27555361	27555440	.	+	2	Parent=Os05t0554400-01
Chr05	irgsp1_rep	CDS	27555554	27555667	.	+	0	Parent=Os05t0554400-01
Chr05	irgsp1_rep	CDS	27555750	27555834	.	+	0	Parent=Os05t0554400-01
Chr05	irgsp1_rep	CDS	27556361	27556452	.	+	2	Parent=Os05t0554400-01
Chr05	irgsp1_rep	CDS	27556996	27557249	.	+	0	Parent=Os05t0554400-01
Chr05	irgsp1_rep	CDS	27557346	27557434	.	+	1	Parent=Os05t0554400-01
Chr05	irgsp1_rep	CDS	27557852	27557979	.	+	2	Parent=Os05t0554400-01
Chr05	irgsp1_rep	three_prime_UTR	27557980	27558220	.	+	.	Parent=Os05t0554400-01
Chr05	irgsp1_rep	mRNA	27552949	27558220	.	+	.	ID=Os05t0554400-02;Name=Os05t0554400-02;Locus_id=Os05g0554400;CGSNL Gene Symbol=SUI2;CGSNL Gene Name=SHORTENED UPPERMOST INTERNODE 2;Oryzabase Gene Symbol Synonym(s)=OsSUI2%2C ES5%2C OsES5;Oryzabase Gene Name Synonym(s)=Shortened Uppermost Internode 2%2C early leaf senescence 5;Note=Similar to Phosphatidylserine synthase 2.;Transcript_evidence=AK102948 (DDBJ%2C Best hit);ORF_evidence=B6SVL1 (UniProt);GO=Biological Process: phosphatidylserine biosynthetic process (GO:0006659);InterPro=Phosphatidyl serine synthase (IPR004277);NIAS_FLcDNA=J033115B22;Oryzabase=19639;Expression=AK102948;TENOR=Os05t0554400-02;KEGG=Os05t0554400-02 (EC:2.7.8.-)
Chr05	irgsp1_rep	five_prime_UTR	27552949	27553178	.	+	.	Parent=Os05t0554400-02
Chr05	irgsp1_rep	CDS	27553179	27553333	.	+	0	Parent=Os05t0554400-02
Chr05	irgsp1_rep	CDS	27554049	27554114	.	+	1	Parent=Os05t0554400-02
Chr05	irgsp1_rep	CDS	27554295	27554354	.	+	1	Parent=Os05t0554400-02
Chr05	irgsp1_rep	CDS	27554749	27554839	.	+	1	Parent=Os05t0554400-02
Chr05	irgsp1_rep	CDS	27555217	27555271	.	+	0	Parent=Os05t0554400-02
Chr05	irgsp1_rep	CDS	27555361	27555446	.	+	2	Parent=Os05t0554400-02
Chr05	irgsp1_rep	three_prime_UTR	27555447	27556452	.	+	.	Parent=Os05t0554400-02
Chr05	irgsp1_rep	three_prime_UTR	27556996	27557249	.	+	.	Parent=Os05t0554400-02
Chr05	irgsp1_rep	three_prime_UTR	27557346	27557434	.	+	.	Parent=Os05t0554400-02
Chr05	irgsp1_rep	three_prime_UTR	27557852	27558220	.	+	.	Parent=Os05t0554400-02
Chr05	irgsp1_rep	mRNA	27553199	27558062	.	-	.	ID=Os05t0554450-00;Name=Os05t0554450-00;Locus_id=Os05g0554450;Note=Non-protein coding transcript.;Transcript_evidence=tplb0061m12 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os05t0554450-00
Chr05	irgsp1_rep	exon	27557851	27558062	.	-	.	Parent=Os05t0554450-00
Chr05	irgsp1_rep	exon	27557341	27557433	.	-	.	Parent=Os05t0554450-00
Chr05	irgsp1_rep	exon	27556994	27557237	.	-	.	Parent=Os05t0554450-00
Chr05	irgsp1_rep	exon	27556360	27556450	.	-	.	Parent=Os05t0554450-00
Chr05	irgsp1_rep	exon	27555741	27555833	.	-	.	Parent=Os05t0554450-00
Chr05	irgsp1_rep	exon	27555518	27555658	.	-	.	Parent=Os05t0554450-00
Chr05	irgsp1_rep	exon	27555184	27555278	.	-	.	Parent=Os05t0554450-00
Chr05	irgsp1_rep	exon	27554747	27554809	.	-	.	Parent=Os05t0554450-00
Chr05	irgsp1_rep	exon	27554234	27554347	.	-	.	Parent=Os05t0554450-00
Chr05	irgsp1_rep	exon	27553199	27553340	.	-	.	Parent=Os05t0554450-00
Chr05	irgsp1_rep	mRNA	27558743	27562897	.	+	.	ID=Os05t0554500-01;Name=Os05t0554500-01;Locus_id=Os05g0554500;Note=Conserved hypothetical protein.;Transcript_evidence=AK072626 (DDBJ%2C Best hit);ORF_evidence=A2Y798 (UniProt);NIAS_FLcDNA=J023131O08;Expression=AK072626;TENOR=Os05t0554500-01;KEGG=Os05t0554500-01
Chr05	irgsp1_rep	five_prime_UTR	27558743	27559092	.	+	.	Parent=Os05t0554500-01
Chr05	irgsp1_rep	five_prime_UTR	27559268	27560822	.	+	.	Parent=Os05t0554500-01
Chr05	irgsp1_rep	CDS	27560823	27560921	.	+	0	Parent=Os05t0554500-01
Chr05	irgsp1_rep	CDS	27561032	27561125	.	+	0	Parent=Os05t0554500-01
Chr05	irgsp1_rep	CDS	27561530	27561739	.	+	2	Parent=Os05t0554500-01
Chr05	irgsp1_rep	CDS	27562051	27562763	.	+	2	Parent=Os05t0554500-01
Chr05	irgsp1_rep	three_prime_UTR	27562764	27562897	.	+	.	Parent=Os05t0554500-01
Chr05	irgsp1_rep	mRNA	27560718	27562914	.	+	.	ID=Os05t0554500-02;Name=Os05t0554500-02;Locus_id=Os05g0554500;Note=Conserved hypothetical protein.;Transcript_evidence=AK064358 (DDBJ%2C Best hit);ORF_evidence=A2Y798 (UniProt);NIAS_FLcDNA=002-108-B07;Expression=AK064358;TENOR=Os05t0554500-02;KEGG=Os05t0554500-02
Chr05	irgsp1_rep	five_prime_UTR	27560718	27560822	.	+	.	Parent=Os05t0554500-02
Chr05	irgsp1_rep	CDS	27560823	27560921	.	+	0	Parent=Os05t0554500-02
Chr05	irgsp1_rep	CDS	27561032	27561125	.	+	0	Parent=Os05t0554500-02
Chr05	irgsp1_rep	CDS	27561530	27561739	.	+	2	Parent=Os05t0554500-02
Chr05	irgsp1_rep	CDS	27562051	27562763	.	+	2	Parent=Os05t0554500-02
Chr05	irgsp1_rep	three_prime_UTR	27562764	27562914	.	+	.	Parent=Os05t0554500-02
Chr05	irgsp1_rep	mRNA	27579146	27579822	.	+	.	ID=Os05t0554601-00;Name=Os05t0554601-00;Locus_id=Os05g0554601;Note=Conserved hypothetical protein.;Transcript_evidence=CT836426 (DDBJ%2C Best hit);ORF_evidence=NP_001174518.1 (RefSeq);TENOR=Os05t0554601-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	27579146	27579550	.	+	.	Parent=Os05t0554601-00
Chr05	irgsp1_rep	CDS	27579551	27579679	.	+	0	Parent=Os05t0554601-00
Chr05	irgsp1_rep	three_prime_UTR	27579680	27579822	.	+	.	Parent=Os05t0554601-00
Chr05	irgsp1_rep	mRNA	27583896	27583963	.	+	.	ID=Os05t0554700-00;Name=Os05t0554700-00;Locus_id=Os05g0554700;Note=Non-protein coding transcript.;Transcript_evidence=X06283 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0554700-00
Chr05	irgsp1_rep	exon	27583896	27583963	.	+	.	Parent=Os05t0554700-00
Chr05	irgsp1_rep	mRNA	27584773	27588204	.	-	.	ID=Os05t0554800-00;Name=Os05t0554800-00;Locus_id=Os05g0554800;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6I623 (UniProt);TENOR=Os05t0554800-00
Chr05	irgsp1_rep	CDS	27586317	27588204	.	-	0	Parent=Os05t0554800-00
Chr05	irgsp1_rep	CDS	27585441	27585676	.	-	2	Parent=Os05t0554800-00
Chr05	irgsp1_rep	CDS	27584773	27585345	.	-	0	Parent=Os05t0554800-00
Chr05	irgsp1_rep	mRNA	27594325	27598783	.	-	.	ID=Os05t0555000-01;Name=Os05t0555000-01;Locus_id=Os05g0555000;Note=Conserved hypothetical protein.;Transcript_evidence=AK119287 (DDBJ%2C Best hit);ORF_evidence=Q6I623 (UniProt);NIAS_FLcDNA=001-130-D01;Expression=AK119287;TENOR=Os05t0555000-01;KEGG=Os05t0555000-01
Chr05	irgsp1_rep	five_prime_UTR	27598607	27598783	.	-	.	Parent=Os05t0555000-01
Chr05	irgsp1_rep	CDS	27597095	27598606	.	-	0	Parent=Os05t0555000-01
Chr05	irgsp1_rep	three_prime_UTR	27596687	27597094	.	-	.	Parent=Os05t0555000-01
Chr05	irgsp1_rep	three_prime_UTR	27595868	27596103	.	-	.	Parent=Os05t0555000-01
Chr05	irgsp1_rep	three_prime_UTR	27594325	27595772	.	-	.	Parent=Os05t0555000-01
Chr05	irgsp1_rep	mRNA	27602413	27605407	.	+	.	ID=Os05t0555100-01;Name=Os05t0555100-01;Locus_id=Os05g0555100;CGSNL Gene Symbol=PP2A-B'KAPPA;CGSNL Gene Name=PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' KAPPA;Oryzabase Gene Symbol Synonym(s)=OsPP2A-B'kappa%2C OsB'kappa%2C B'kappa-PP2A;Oryzabase Gene Name Synonym(s)=protein phosphatase 2A B'kappa subunit%2C PP2A regulatory subunit B'kappa;Note=Similar to Protein phosphatase 2A B'kappa subunit.;Transcript_evidence=AK069462 (DDBJ%2C Best hit);ORF_evidence=Q8L6I7 (UniProt);GO=Biological Process: signal transduction (GO:0007165),Cellular Component: protein phosphatase type 2A complex (GO:0000159),Molecular Function: binding (GO:0005488),Molecular Function: protein phosphatase type 2A regulator activity (GO:0008601);InterPro=Protein phosphatase 2A%2C regulatory B subunit%2C B56 (IPR002554),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023024N22;Manual Curation=September 11%2C 2019;Oryzabase=13913;Expression=AK069462;TENOR=Os05t0555100-01;KEGG=Os05t0555100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	27602413	27602610	.	+	.	Parent=Os05t0555100-01
Chr05	irgsp1_rep	five_prime_UTR	27603088	27603202	.	+	.	Parent=Os05t0555100-01
Chr05	irgsp1_rep	CDS	27603203	27604285	.	+	0	Parent=Os05t0555100-01
Chr05	irgsp1_rep	three_prime_UTR	27604286	27605407	.	+	.	Parent=Os05t0555100-01
Chr05	irgsp1_rep	mRNA	27603032	27605142	.	+	.	ID=Os05t0555100-02;Name=Os05t0555100-02;Locus_id=Os05g0555100;RAP-DB Gene Symbol Synonym(s)=B'&kappa%3B-PP2A;RAP-DB Gene Name Synonym(s)=Protein Phosphatase 2A regulatory subunit B'&kappa%3B;CGSNL Gene Symbol=PP2A-B'KAPPA;CGSNL Gene Name=PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' KAPPA;Oryzabase Gene Symbol Synonym(s)=OsPP2A-B'kappa%2C OsB'kappa%2C B'kappa-PP2A;Oryzabase Gene Name Synonym(s)=protein phosphatase 2A B'kappa subunit%2C PP2A regulatory subunit B'kappa;Note=Protein phosphatase 2A (PP2A) regulatory subunit B'&kappa%3B%2C Regulation of salt tolerance;Transcript_evidence=Inferred from literature;ORF_evidence=Q8L6I7;GO=Biological Process: signal transduction (GO:0007165),Molecular Function: protein phosphatase regulator activity (GO:0019888),Cellular Component: protein phosphatase type 2A complex (GO:0000159);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),Protein phosphatase 2A%2C regulatory B subunit%2C B56 (IPR002554);Manual Curation=September 11%2C 2019;Literature_PMID=31221736,12068121;Oryzabase=13913;Subcellular location=plasma membrane (GO:0005886)
Chr05	irgsp1_rep	CDS	27603032	27604195	.	+	0	Parent=Os05t0555100-02
Chr05	irgsp1_rep	CDS	27604774	27605142	.	+	0	Parent=Os05t0555100-02
Chr05	irgsp1_rep	mRNA	27605843	27605915	.	-	.	ID=Os05t0555201-00;Name=Os05t0555201-00;Locus_id=Os05g0555201;Note=Non-protein coding transcript.;Transcript_evidence=X06284 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0555201-00
Chr05	irgsp1_rep	exon	27605843	27605915	.	-	.	Parent=Os05t0555201-00
Chr05	irgsp1_rep	mRNA	27605989	27607548	.	-	.	ID=Os05t0555300-01;Name=Os05t0555300-01;Locus_id=Os05g0555300;Oryzabase Gene Name Synonym(s)=Ferredoxin I;Note=Similar to electron carrier/ electron transporter/ iron ion binding protein.;Transcript_evidence=AK062997 (DDBJ%2C Best hit);ORF_evidence=NP_001147484.1 (RefSeq);GO=Molecular Function: electron carrier activity (GO:0009055),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=Ferredoxin (IPR001041),Beta-grasp fold%2C ferredoxin-type (IPR012675);NIAS_FLcDNA=001-109-G11;Oryzabase=12445;Expression=AK062997;TENOR=Os05t0555300-01;KEGG=Os05t0555300-01
Chr05	irgsp1_rep	five_prime_UTR	27607517	27607548	.	-	.	Parent=Os05t0555300-01
Chr05	irgsp1_rep	CDS	27607289	27607516	.	-	0	Parent=Os05t0555300-01
Chr05	irgsp1_rep	CDS	27607092	27607205	.	-	0	Parent=Os05t0555300-01
Chr05	irgsp1_rep	CDS	27606908	27606961	.	-	0	Parent=Os05t0555300-01
Chr05	irgsp1_rep	CDS	27606641	27606703	.	-	0	Parent=Os05t0555300-01
Chr05	irgsp1_rep	CDS	27606426	27606488	.	-	0	Parent=Os05t0555300-01
Chr05	irgsp1_rep	CDS	27606221	27606331	.	-	0	Parent=Os05t0555300-01
Chr05	irgsp1_rep	three_prime_UTR	27605989	27606220	.	-	.	Parent=Os05t0555300-01
Chr05	irgsp1_rep	mRNA	27605983	27607548	.	-	.	ID=Os05t0555300-02;Name=Os05t0555300-02;Locus_id=Os05g0555300;Oryzabase Gene Name Synonym(s)=Ferredoxin I;Note=Beta-grasp fold%2C ferredoxin-type domain containing protein.;Transcript_evidence=AK062890 (DDBJ%2C Best hit);ORF_evidence=NP_001147484.1 (RefSeq);GO=Molecular Function: electron carrier activity (GO:0009055),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=Ferredoxin (IPR001041),Beta-grasp fold%2C ferredoxin-type (IPR012675);NIAS_FLcDNA=001-108-E03;Oryzabase=12445;Expression=AK062890;TENOR=Os05t0555300-02;KEGG=Os05t0555300-02
Chr05	irgsp1_rep	five_prime_UTR	27607517	27607548	.	-	.	Parent=Os05t0555300-02
Chr05	irgsp1_rep	CDS	27607289	27607516	.	-	0	Parent=Os05t0555300-02
Chr05	irgsp1_rep	CDS	27607092	27607205	.	-	0	Parent=Os05t0555300-02
Chr05	irgsp1_rep	CDS	27606908	27606961	.	-	0	Parent=Os05t0555300-02
Chr05	irgsp1_rep	CDS	27606641	27606703	.	-	0	Parent=Os05t0555300-02
Chr05	irgsp1_rep	CDS	27606425	27606488	.	-	0	Parent=Os05t0555300-02
Chr05	irgsp1_rep	CDS	27606154	27606188	.	-	2	Parent=Os05t0555300-02
Chr05	irgsp1_rep	three_prime_UTR	27605983	27606153	.	-	.	Parent=Os05t0555300-02
Chr05	irgsp1_rep	mRNA	27613971	27614479	.	-	.	ID=Os05t0555450-00;Name=Os05t0555450-00;Locus_id=Os05g0555450;Note=Hypothetical gene.;Transcript_evidence=BT084685 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0555450-00;KEGG=Os05t0555450-00
Chr05	irgsp1_rep	five_prime_UTR	27614478	27614479	.	-	.	Parent=Os05t0555450-00
Chr05	irgsp1_rep	CDS	27613995	27614477	.	-	0	Parent=Os05t0555450-00
Chr05	irgsp1_rep	three_prime_UTR	27613971	27613994	.	-	.	Parent=Os05t0555450-00
Chr05	irgsp1_rep	mRNA	27631211	27636450	.	+	.	ID=Os05t0555600-01;Name=Os05t0555600-01;Locus_id=Os05g0555600;CGSNL Gene Symbol=GLT2;CGSNL Gene Name=NADH-DEPENDENT GLUTAMATE SYNTHASE 2;Oryzabase Gene Symbol Synonym(s)=OsGLT2%2C OsNADH-GOGAT2%2C NADH-GOGAT2%2C OsGOGAT2;Oryzabase Gene Name Synonym(s)=NADH-glutamate synthase 2%2C NADH-dependent glutamate synthase2%2C NADH-dependent glutamate synthase 2;Note=Similar to Glutamate synthase [NADH]%2C amyloplastic.;Transcript_evidence=AK070485 (DDBJ%2C Best hit);ORF_evidence=Q03460 (UniProt);GO=Biological Process: glutamate biosynthetic process (GO:0006537),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-NH2 group of donors%2C NAD or NADP as acceptor (GO:0016639),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=Glutamate synthase%2C alpha subunit%2C C-terminal (IPR002489),Glutamate synthase%2C NADH/NADPH%2C small subunit 1 (IPR006005),Alpha-helical ferredoxin (IPR009051),Fumarate reductase%2C C-terminal (IPR012285),Pyridine nucleotide-disulphide oxidoreductase%2C FAD/NAD(P)-binding domain (IPR023753);NIAS_FLcDNA=J023049P18;Oryzabase=9312;TENOR=Os05t0555600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	27631211	27631212	.	+	.	Parent=Os05t0555600-01
Chr05	irgsp1_rep	CDS	27631213	27631554	.	+	0	Parent=Os05t0555600-01
Chr05	irgsp1_rep	CDS	27631708	27631926	.	+	0	Parent=Os05t0555600-01
Chr05	irgsp1_rep	CDS	27634248	27634522	.	+	0	Parent=Os05t0555600-01
Chr05	irgsp1_rep	CDS	27634615	27634920	.	+	1	Parent=Os05t0555600-01
Chr05	irgsp1_rep	CDS	27635069	27635336	.	+	1	Parent=Os05t0555600-01
Chr05	irgsp1_rep	CDS	27635486	27635740	.	+	0	Parent=Os05t0555600-01
Chr05	irgsp1_rep	CDS	27635861	27636127	.	+	0	Parent=Os05t0555600-01
Chr05	irgsp1_rep	three_prime_UTR	27636128	27636450	.	+	.	Parent=Os05t0555600-01
Chr05	irgsp1_rep	mRNA	27631773	27636394	.	+	.	ID=Os05t0555600-02;Name=Os05t0555600-02;Locus_id=Os05g0555600;CGSNL Gene Symbol=GLT2;CGSNL Gene Name=NADH-DEPENDENT GLUTAMATE SYNTHASE 2;Oryzabase Gene Symbol Synonym(s)=OsGLT2%2C OsNADH-GOGAT2%2C NADH-GOGAT2%2C OsGOGAT2;Oryzabase Gene Name Synonym(s)=NADH-glutamate synthase 2%2C NADH-dependent glutamate synthase2%2C NADH-dependent glutamate synthase 2;Note=Similar to NADH-glutamate synthase 2.;Transcript_evidence=AK071893 (DDBJ%2C Best hit);ORF_evidence=Q93WZ7 (UniProt);GO=Biological Process: glutamate biosynthetic process (GO:0006537),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-NH2 group of donors%2C NAD or NADP as acceptor (GO:0016639),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=Glutamate synthase%2C NADH/NADPH%2C small subunit 1 (IPR006005),Alpha-helical ferredoxin (IPR009051),Fumarate reductase%2C C-terminal (IPR012285),Pyridine nucleotide-disulphide oxidoreductase%2C FAD/NAD(P)-binding domain (IPR023753);NIAS_FLcDNA=J013053K07;Oryzabase=9312;Expression=AK071893;TENOR=Os05t0555600-02;KEGG=Os05t0555600-02 (EC:1.4.1.13%2C EC:1.4.1.14)
Chr05	irgsp1_rep	five_prime_UTR	27631773	27631773	.	+	.	Parent=Os05t0555600-02
Chr05	irgsp1_rep	CDS	27631774	27631926	.	+	0	Parent=Os05t0555600-02
Chr05	irgsp1_rep	CDS	27634248	27634522	.	+	0	Parent=Os05t0555600-02
Chr05	irgsp1_rep	CDS	27634615	27634920	.	+	1	Parent=Os05t0555600-02
Chr05	irgsp1_rep	CDS	27635069	27635336	.	+	1	Parent=Os05t0555600-02
Chr05	irgsp1_rep	CDS	27635486	27635740	.	+	0	Parent=Os05t0555600-02
Chr05	irgsp1_rep	CDS	27635861	27636127	.	+	0	Parent=Os05t0555600-02
Chr05	irgsp1_rep	three_prime_UTR	27636128	27636394	.	+	.	Parent=Os05t0555600-02
Chr05	irgsp1_rep	mRNA	27622654	27636191	.	+	.	ID=Os05t0555600-03;Name=Os05t0555600-03;Locus_id=Os05g0555600;RAP-DB Gene Symbol Synonym(s)=OsNADH-GOGAT2;RAP-DB Gene Name Synonym(s)=NADH-glutamate synthase 2;CGSNL Gene Symbol=GLT2;CGSNL Gene Name=NADH-DEPENDENT GLUTAMATE SYNTHASE 2;Oryzabase Gene Symbol Synonym(s)=OsGLT2%2C OsNADH-GOGAT2%2C NADH-GOGAT2%2C OsGOGAT2;Oryzabase Gene Name Synonym(s)=NADH-glutamate synthase 2%2C NADH-dependent glutamate synthase2%2C NADH-dependent glutamate synthase 2;Note=NADH-glutamate synthase%2C Remobilization of nitrogen in senescing organs;Transcript_evidence=AB274818 (Sasanishiki);ORF_evidence=Q0DG35;GO=Biological Process: glutamate biosynthetic process (GO:0006537),Biological Process: nitrogen compound metabolic process (GO:0006807),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: iron ion binding (GO:0005506),Molecular Function: FMN binding (GO:0010181),Molecular Function: glutamate synthase activity (GO:0015930),Molecular Function: glutamate synthase (NADH) activity (GO:0016040),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-NH2 group of donors (GO:0016638),Molecular Function: oxidoreductase activity%2C acting on the CH-NH2 group of donors%2C NAD or NADP as acceptor (GO:0016639),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=Nucleophile aminohydrolases%2C N-terminal (IPR029055),Aldolase-type TIM barrel (IPR013785),Glutamate synthase%2C alpha subunit%2C C-terminal domain superfamily (IPR036485),Alpha-helical ferredoxin (IPR009051),FAD/NAD(P)-binding domain superfamily (IPR036188),Glutamate synthase%2C eukaryotic (IPR012220),Glutamate synthase%2C NADH/NADPH%2C small subunit 1 (IPR006005),Glutamine amidotransferase type 2 domain (IPR017932),Glutamate synthase%2C central-N (IPR006982),Glutamate synthase domain (IPR002932),Glutamate synthase%2C alpha subunit%2C C-terminal (IPR002489),Dihydroprymidine dehydrogenase domain II (IPR028261),FAD/NAD(P)-binding domain (IPR023753);Manual Curation=May 7%2C 2020;Literature_PMID=24634487,22645542,17350935;Oryzabase=9312
Chr05	irgsp1_rep	five_prime_UTR	27622654	27622688	.	+	.	Parent=Os05t0555600-03
Chr05	irgsp1_rep	CDS	27622689	27623057	.	+	0	Parent=Os05t0555600-03
Chr05	irgsp1_rep	CDS	27623172	27623291	.	+	0	Parent=Os05t0555600-03
Chr05	irgsp1_rep	CDS	27623394	27623507	.	+	0	Parent=Os05t0555600-03
Chr05	irgsp1_rep	CDS	27623621	27623773	.	+	0	Parent=Os05t0555600-03
Chr05	irgsp1_rep	CDS	27623868	27623968	.	+	0	Parent=Os05t0555600-03
Chr05	irgsp1_rep	CDS	27624269	27624365	.	+	1	Parent=Os05t0555600-03
Chr05	irgsp1_rep	CDS	27624866	27624975	.	+	0	Parent=Os05t0555600-03
Chr05	irgsp1_rep	CDS	27625099	27625202	.	+	1	Parent=Os05t0555600-03
Chr05	irgsp1_rep	CDS	27625453	27625632	.	+	2	Parent=Os05t0555600-03
Chr05	irgsp1_rep	CDS	27625722	27626065	.	+	2	Parent=Os05t0555600-03
Chr05	irgsp1_rep	CDS	27626165	27626229	.	+	0	Parent=Os05t0555600-03
Chr05	irgsp1_rep	CDS	27626305	27626774	.	+	1	Parent=Os05t0555600-03
Chr05	irgsp1_rep	CDS	27627251	27628117	.	+	2	Parent=Os05t0555600-03
Chr05	irgsp1_rep	CDS	27629340	27629494	.	+	2	Parent=Os05t0555600-03
Chr05	irgsp1_rep	CDS	27629619	27629780	.	+	0	Parent=Os05t0555600-03
Chr05	irgsp1_rep	CDS	27629989	27631554	.	+	0	Parent=Os05t0555600-03
Chr05	irgsp1_rep	CDS	27631708	27631926	.	+	0	Parent=Os05t0555600-03
Chr05	irgsp1_rep	CDS	27634248	27634522	.	+	0	Parent=Os05t0555600-03
Chr05	irgsp1_rep	CDS	27634615	27634920	.	+	1	Parent=Os05t0555600-03
Chr05	irgsp1_rep	CDS	27635069	27635336	.	+	1	Parent=Os05t0555600-03
Chr05	irgsp1_rep	CDS	27635486	27635740	.	+	0	Parent=Os05t0555600-03
Chr05	irgsp1_rep	CDS	27635861	27636127	.	+	0	Parent=Os05t0555600-03
Chr05	irgsp1_rep	three_prime_UTR	27636128	27636191	.	+	.	Parent=Os05t0555600-03
Chr05	irgsp1_rep	mRNA	27638094	27638894	.	+	.	ID=Os05t0555700-01;Name=Os05t0555700-01;Locus_id=Os05g0555700;Note=Conserved hypothetical protein.;Transcript_evidence=AK069230 (DDBJ%2C Best hit);ORF_evidence=A2Y7A5 (UniProt);NIAS_FLcDNA=J023018F12;Expression=AK069230;TENOR=Os05t0555700-01;KEGG=Os05t0555700-01
Chr05	irgsp1_rep	five_prime_UTR	27638094	27638177	.	+	.	Parent=Os05t0555700-01
Chr05	irgsp1_rep	CDS	27638178	27638615	.	+	0	Parent=Os05t0555700-01
Chr05	irgsp1_rep	three_prime_UTR	27638616	27638894	.	+	.	Parent=Os05t0555700-01
Chr05	irgsp1_rep	mRNA	27640763	27641333	.	+	.	ID=Os05t0555800-00;Name=Os05t0555800-00;Locus_id=Os05g0555800;Note=Similar to 60S ribosomal protein L35a-3.;Transcript_evidence=Q9C912 (UniProt);ORF_evidence=Q9C912 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L35A (IPR001780),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Ribosomal protein L35Ae%2C conserved site (IPR018266);TENOR=Os05t0555800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	27640763	27640830	.	+	0	Parent=Os05t0555800-00
Chr05	irgsp1_rep	CDS	27640943	27641171	.	+	1	Parent=Os05t0555800-00
Chr05	irgsp1_rep	CDS	27641292	27641333	.	+	0	Parent=Os05t0555800-00
Chr05	irgsp1_rep	mRNA	27642436	27642713	.	+	.	ID=Os05t0555900-01;Name=Os05t0555900-01;Locus_id=Os05g0555900;Note=Non-protein coding transcript.;Transcript_evidence=AK058732 (DDBJ%2C Best hit),AK058283 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-019-F11,001-013-D07;TENOR=Os05t0555900-01
Chr05	irgsp1_rep	exon	27642436	27642713	.	+	.	Parent=Os05t0555900-01
Chr05	irgsp1_rep	mRNA	27643114	27647653	.	+	.	ID=Os05t0556000-01;Name=Os05t0556000-01;Locus_id=Os05g0556000;Note=Oxoglutarate/iron-dependent oxygenase domain containing protein.;Transcript_evidence=AK059050 (DDBJ%2C Best hit);ORF_evidence=B9FLJ2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=001-021-E08;Expression=AK059050;TENOR=Os05t0556000-01;KEGG=Os05t0556000-01
Chr05	irgsp1_rep	five_prime_UTR	27643114	27643404	.	+	.	Parent=Os05t0556000-01
Chr05	irgsp1_rep	CDS	27643405	27643611	.	+	0	Parent=Os05t0556000-01
Chr05	irgsp1_rep	CDS	27643696	27643773	.	+	0	Parent=Os05t0556000-01
Chr05	irgsp1_rep	CDS	27643872	27643921	.	+	0	Parent=Os05t0556000-01
Chr05	irgsp1_rep	CDS	27644038	27644091	.	+	1	Parent=Os05t0556000-01
Chr05	irgsp1_rep	CDS	27644289	27644341	.	+	1	Parent=Os05t0556000-01
Chr05	irgsp1_rep	CDS	27644425	27644497	.	+	2	Parent=Os05t0556000-01
Chr05	irgsp1_rep	CDS	27644773	27644834	.	+	1	Parent=Os05t0556000-01
Chr05	irgsp1_rep	CDS	27645243	27645311	.	+	2	Parent=Os05t0556000-01
Chr05	irgsp1_rep	CDS	27645507	27645615	.	+	2	Parent=Os05t0556000-01
Chr05	irgsp1_rep	CDS	27645982	27646049	.	+	1	Parent=Os05t0556000-01
Chr05	irgsp1_rep	CDS	27646306	27646406	.	+	2	Parent=Os05t0556000-01
Chr05	irgsp1_rep	CDS	27646641	27646736	.	+	0	Parent=Os05t0556000-01
Chr05	irgsp1_rep	CDS	27646827	27646894	.	+	0	Parent=Os05t0556000-01
Chr05	irgsp1_rep	CDS	27647222	27647267	.	+	1	Parent=Os05t0556000-01
Chr05	irgsp1_rep	CDS	27647351	27647431	.	+	0	Parent=Os05t0556000-01
Chr05	irgsp1_rep	three_prime_UTR	27647432	27647653	.	+	.	Parent=Os05t0556000-01
Chr05	irgsp1_rep	mRNA	27643324	27647653	.	+	.	ID=Os05t0556000-02;Name=Os05t0556000-02;Locus_id=Os05g0556000;Note=Oxoglutarate/iron-dependent oxygenase domain containing protein.;Transcript_evidence=AK099318 (DDBJ%2C Best hit);ORF_evidence=B9FLJ2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=J023150E08;Expression=AK099318;TENOR=Os05t0556000-02;KEGG=Os05t0556000-02
Chr05	irgsp1_rep	five_prime_UTR	27643324	27643404	.	+	.	Parent=Os05t0556000-02
Chr05	irgsp1_rep	CDS	27643405	27643611	.	+	0	Parent=Os05t0556000-02
Chr05	irgsp1_rep	CDS	27643696	27643773	.	+	0	Parent=Os05t0556000-02
Chr05	irgsp1_rep	CDS	27643872	27643921	.	+	0	Parent=Os05t0556000-02
Chr05	irgsp1_rep	CDS	27644038	27644091	.	+	1	Parent=Os05t0556000-02
Chr05	irgsp1_rep	CDS	27644289	27644341	.	+	1	Parent=Os05t0556000-02
Chr05	irgsp1_rep	CDS	27644425	27644497	.	+	2	Parent=Os05t0556000-02
Chr05	irgsp1_rep	CDS	27644773	27644834	.	+	1	Parent=Os05t0556000-02
Chr05	irgsp1_rep	CDS	27645243	27645311	.	+	2	Parent=Os05t0556000-02
Chr05	irgsp1_rep	CDS	27645507	27645615	.	+	2	Parent=Os05t0556000-02
Chr05	irgsp1_rep	CDS	27645982	27646049	.	+	1	Parent=Os05t0556000-02
Chr05	irgsp1_rep	CDS	27646306	27646406	.	+	2	Parent=Os05t0556000-02
Chr05	irgsp1_rep	CDS	27646641	27646736	.	+	0	Parent=Os05t0556000-02
Chr05	irgsp1_rep	CDS	27646827	27646894	.	+	0	Parent=Os05t0556000-02
Chr05	irgsp1_rep	CDS	27647222	27647267	.	+	1	Parent=Os05t0556000-02
Chr05	irgsp1_rep	CDS	27647351	27647431	.	+	0	Parent=Os05t0556000-02
Chr05	irgsp1_rep	three_prime_UTR	27647432	27647653	.	+	.	Parent=Os05t0556000-02
Chr05	irgsp1_rep	mRNA	27648092	27653659	.	-	.	ID=Os05t0556100-01;Name=Os05t0556100-01;Locus_id=Os05g0556100;Oryzabase Gene Symbol Synonym(s)=OsDRP1A%2C DRP1A;Oryzabase Gene Name Synonym(s)=dynamin-related protein 1A;Note=Similar to SDL5A.;Transcript_evidence=AK065908 (DDBJ%2C Best hit);ORF_evidence=NP_001151777.1 (RefSeq);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Dynamin central domain (IPR000375),Dynamin%2C GTPase domain (IPR001401),Dynamin GTPase effector (IPR003130),Dynamin%2C GTPase region%2C conserved site (IPR019762),GTPase effector domain%2C GED (IPR020850),Dynamin (IPR022812);NIAS_FLcDNA=J013045L08;Oryzabase=21595;Expression=AK065908;TENOR=Os05t0556100-01;KEGG=Os05t0556100-01
Chr05	irgsp1_rep	five_prime_UTR	27653476	27653659	.	-	.	Parent=Os05t0556100-01
Chr05	irgsp1_rep	CDS	27653347	27653475	.	-	0	Parent=Os05t0556100-01
Chr05	irgsp1_rep	CDS	27652924	27652987	.	-	0	Parent=Os05t0556100-01
Chr05	irgsp1_rep	CDS	27652730	27652834	.	-	2	Parent=Os05t0556100-01
Chr05	irgsp1_rep	CDS	27652400	27652501	.	-	2	Parent=Os05t0556100-01
Chr05	irgsp1_rep	CDS	27652091	27652141	.	-	2	Parent=Os05t0556100-01
Chr05	irgsp1_rep	CDS	27651931	27651992	.	-	2	Parent=Os05t0556100-01
Chr05	irgsp1_rep	CDS	27651556	27651646	.	-	0	Parent=Os05t0556100-01
Chr05	irgsp1_rep	CDS	27651412	27651476	.	-	2	Parent=Os05t0556100-01
Chr05	irgsp1_rep	CDS	27650995	27651189	.	-	0	Parent=Os05t0556100-01
Chr05	irgsp1_rep	CDS	27650790	27650909	.	-	0	Parent=Os05t0556100-01
Chr05	irgsp1_rep	CDS	27650554	27650624	.	-	0	Parent=Os05t0556100-01
Chr05	irgsp1_rep	CDS	27649735	27649960	.	-	1	Parent=Os05t0556100-01
Chr05	irgsp1_rep	CDS	27649555	27649605	.	-	0	Parent=Os05t0556100-01
Chr05	irgsp1_rep	CDS	27649022	27649250	.	-	0	Parent=Os05t0556100-01
Chr05	irgsp1_rep	CDS	27648645	27648784	.	-	2	Parent=Os05t0556100-01
Chr05	irgsp1_rep	CDS	27648380	27648508	.	-	0	Parent=Os05t0556100-01
Chr05	irgsp1_rep	three_prime_UTR	27648092	27648379	.	-	.	Parent=Os05t0556100-01
Chr05	irgsp1_rep	mRNA	27648163	27653679	.	+	.	ID=Os05t0556201-00;Name=Os05t0556201-00;Locus_id=Os05g0556201;Note=Hypothetical protein.;Transcript_evidence=tplb0034e16 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0556201-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	27648163	27648501	.	+	.	Parent=Os05t0556201-00
Chr05	irgsp1_rep	five_prime_UTR	27648638	27648777	.	+	.	Parent=Os05t0556201-00
Chr05	irgsp1_rep	five_prime_UTR	27649005	27649297	.	+	.	Parent=Os05t0556201-00
Chr05	irgsp1_rep	five_prime_UTR	27649730	27649959	.	+	.	Parent=Os05t0556201-00
Chr05	irgsp1_rep	five_prime_UTR	27650553	27650612	.	+	.	Parent=Os05t0556201-00
Chr05	irgsp1_rep	five_prime_UTR	27650778	27650898	.	+	.	Parent=Os05t0556201-00
Chr05	irgsp1_rep	five_prime_UTR	27650989	27651189	.	+	.	Parent=Os05t0556201-00
Chr05	irgsp1_rep	five_prime_UTR	27651412	27651466	.	+	.	Parent=Os05t0556201-00
Chr05	irgsp1_rep	five_prime_UTR	27651550	27651665	.	+	.	Parent=Os05t0556201-00
Chr05	irgsp1_rep	five_prime_UTR	27651947	27651992	.	+	.	Parent=Os05t0556201-00
Chr05	irgsp1_rep	five_prime_UTR	27652091	27652151	.	+	.	Parent=Os05t0556201-00
Chr05	irgsp1_rep	five_prime_UTR	27652409	27652498	.	+	.	Parent=Os05t0556201-00
Chr05	irgsp1_rep	five_prime_UTR	27652727	27652830	.	+	.	Parent=Os05t0556201-00
Chr05	irgsp1_rep	CDS	27652831	27652833	.	+	0	Parent=Os05t0556201-00
Chr05	irgsp1_rep	CDS	27652923	27652987	.	+	0	Parent=Os05t0556201-00
Chr05	irgsp1_rep	CDS	27653347	27653674	.	+	1	Parent=Os05t0556201-00
Chr05	irgsp1_rep	three_prime_UTR	27653675	27653679	.	+	.	Parent=Os05t0556201-00
Chr05	irgsp1_rep	mRNA	27660691	27664963	.	+	.	ID=Os05t0556300-01;Name=Os05t0556300-01;Locus_id=Os05g0556300;Note=Uncharacterised protein family UPF0089 domain containing protein.;Transcript_evidence=AK240651 (DDBJ%2C Best hit);ORF_evidence=A2Y7A9 (UniProt);GO=Molecular Function: diacylglycerol O-acyltransferase activity (GO:0004144);InterPro=O-acyltransferase%2C WSD1%2C N-terminal (IPR004255),O-acyltransferase%2C WSD1%2C C-terminal (IPR009721);NIAS_FLcDNA=J023084I07;TENOR=Os05t0556300-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	27660691	27660843	.	+	.	Parent=Os05t0556300-01
Chr05	irgsp1_rep	CDS	27660844	27661266	.	+	0	Parent=Os05t0556300-01
Chr05	irgsp1_rep	CDS	27662711	27663322	.	+	0	Parent=Os05t0556300-01
Chr05	irgsp1_rep	CDS	27663433	27663499	.	+	0	Parent=Os05t0556300-01
Chr05	irgsp1_rep	CDS	27663595	27663686	.	+	2	Parent=Os05t0556300-01
Chr05	irgsp1_rep	CDS	27663817	27664032	.	+	0	Parent=Os05t0556300-01
Chr05	irgsp1_rep	CDS	27664193	27664330	.	+	0	Parent=Os05t0556300-01
Chr05	irgsp1_rep	CDS	27664649	27664798	.	+	0	Parent=Os05t0556300-01
Chr05	irgsp1_rep	three_prime_UTR	27664799	27664963	.	+	.	Parent=Os05t0556300-01
Chr05	irgsp1_rep	mRNA	27660945	27664924	.	-	.	ID=Os05t0556350-01;Name=Os05t0556350-01;Locus_id=Os05g0556350;Note=Hypothetical gene.;Transcript_evidence=AK287458 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J043019N07;TENOR=Os05t0556350-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	27664649	27664924	.	-	.	Parent=Os05t0556350-01
Chr05	irgsp1_rep	five_prime_UTR	27664193	27664330	.	-	.	Parent=Os05t0556350-01
Chr05	irgsp1_rep	five_prime_UTR	27663817	27664032	.	-	.	Parent=Os05t0556350-01
Chr05	irgsp1_rep	five_prime_UTR	27663595	27663686	.	-	.	Parent=Os05t0556350-01
Chr05	irgsp1_rep	five_prime_UTR	27663433	27663499	.	-	.	Parent=Os05t0556350-01
Chr05	irgsp1_rep	five_prime_UTR	27662836	27663322	.	-	.	Parent=Os05t0556350-01
Chr05	irgsp1_rep	CDS	27662711	27662835	.	-	0	Parent=Os05t0556350-01
Chr05	irgsp1_rep	CDS	27661161	27661266	.	-	1	Parent=Os05t0556350-01
Chr05	irgsp1_rep	three_prime_UTR	27660945	27661160	.	-	.	Parent=Os05t0556350-01
Chr05	irgsp1_rep	mRNA	27666328	27669347	.	+	.	ID=Os05t0556400-01;Name=Os05t0556400-01;Locus_id=Os05g0556400;Note=DOMON related domain containing protein.;Transcript_evidence=AK058980 (DDBJ%2C Best hit);ORF_evidence=B6TH76 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=CytoChrome b561%2C eukaryote (IPR004877),DOMON domain (IPR005018),CytoChrome b561/ferric reductase transmembrane (IPR006593);NIAS_FLcDNA=001-020-D11;Expression=AK058980;TENOR=Os05t0556400-01;KEGG=Os05t0556400-01
Chr05	irgsp1_rep	five_prime_UTR	27666328	27666461	.	+	.	Parent=Os05t0556400-01
Chr05	irgsp1_rep	CDS	27666462	27666620	.	+	0	Parent=Os05t0556400-01
Chr05	irgsp1_rep	CDS	27667060	27667462	.	+	0	Parent=Os05t0556400-01
Chr05	irgsp1_rep	CDS	27668468	27668754	.	+	2	Parent=Os05t0556400-01
Chr05	irgsp1_rep	CDS	27668874	27669134	.	+	0	Parent=Os05t0556400-01
Chr05	irgsp1_rep	three_prime_UTR	27669135	27669347	.	+	.	Parent=Os05t0556400-01
Chr05	irgsp1_rep	mRNA	27677234	27679855	.	+	.	ID=Os05t0556600-01;Name=Os05t0556600-01;Locus_id=Os05g0556600;Note=Hypothetical conserved gene.;Transcript_evidence=AK242737 (DDBJ%2C Best hit);ORF_evidence=B9FLJ5 (UniProt);InterPro=Protein of unknown function DUF1639 (IPR012438);NIAS_FLcDNA=J090049D20;TENOR=Os05t0556600-01;KEGG=Os05t0556600-01
Chr05	irgsp1_rep	five_prime_UTR	27677234	27677271	.	+	.	Parent=Os05t0556600-01
Chr05	irgsp1_rep	CDS	27677272	27677309	.	+	0	Parent=Os05t0556600-01
Chr05	irgsp1_rep	CDS	27678093	27678435	.	+	1	Parent=Os05t0556600-01
Chr05	irgsp1_rep	CDS	27678544	27678621	.	+	0	Parent=Os05t0556600-01
Chr05	irgsp1_rep	CDS	27679362	27679418	.	+	0	Parent=Os05t0556600-01
Chr05	irgsp1_rep	three_prime_UTR	27679419	27679855	.	+	.	Parent=Os05t0556600-01
Chr05	irgsp1_rep	mRNA	27686378	27687385	.	-	.	ID=Os05t0556650-00;Name=Os05t0556650-00;Locus_id=Os05g0556650;Note=Hypothetical gene.;Transcript_evidence=EU943459 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0556650-00
Chr05	irgsp1_rep	five_prime_UTR	27687200	27687385	.	-	.	Parent=Os05t0556650-00
Chr05	irgsp1_rep	CDS	27687001	27687199	.	-	0	Parent=Os05t0556650-00
Chr05	irgsp1_rep	CDS	27686711	27686763	.	-	2	Parent=Os05t0556650-00
Chr05	irgsp1_rep	three_prime_UTR	27686675	27686710	.	-	.	Parent=Os05t0556650-00
Chr05	irgsp1_rep	three_prime_UTR	27686378	27686503	.	-	.	Parent=Os05t0556650-00
Chr05	irgsp1_rep	mRNA	27686725	27688323	.	+	.	ID=Os05t0556700-01;Name=Os05t0556700-01;Locus_id=Os05g0556700;Note=Similar to Cct2-prov protein.;Transcript_evidence=AK059663 (DDBJ%2C Best hit);ORF_evidence=B6T8X5 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: cellular protein metabolic process (GO:0044267),Molecular Function: ATP binding (GO:0005524),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Chaperonin Cpn60/TCP-1 (IPR002423),T-complex protein 1%2C beta subunit (IPR012716),Chaperone%2C tailless complex polypeptide 1 (IPR017998);NIAS_FLcDNA=001-031-E04;Expression=AK059663;TENOR=Os05t0556700-01;KEGG=Os05t0556700-01
Chr05	irgsp1_rep	five_prime_UTR	27686725	27686726	.	+	.	Parent=Os05t0556700-01
Chr05	irgsp1_rep	CDS	27686727	27686764	.	+	0	Parent=Os05t0556700-01
Chr05	irgsp1_rep	CDS	27687002	27687487	.	+	1	Parent=Os05t0556700-01
Chr05	irgsp1_rep	CDS	27687579	27687894	.	+	1	Parent=Os05t0556700-01
Chr05	irgsp1_rep	CDS	27687975	27688121	.	+	0	Parent=Os05t0556700-01
Chr05	irgsp1_rep	three_prime_UTR	27688122	27688323	.	+	.	Parent=Os05t0556700-01
Chr05	irgsp1_rep	mRNA	27690004	27691439	.	-	.	ID=Os05t0556800-01;Name=Os05t0556800-01;Locus_id=Os05g0556800;RAP-DB Gene Symbol Synonym(s)=OsPUP7;RAP-DB Gene Name Synonym(s)=purine permease 7;CGSNL Gene Symbol=PUP7;CGSNL Gene Name=PURINE PERMEASE 7;Oryzabase Gene Symbol Synonym(s)=OsPUP7;Oryzabase Gene Name Synonym(s)=purine permease 7%2C PUP-type cytokinin transporter 7;Note=Purine permease%2C Transport of cytokinin%2C Growth and development control;Transcript_evidence=AK109887;ORF_evidence=Q6I609;NIAS_FLcDNA=002-149-E01;Manual Curation=January 25%2C 2019;Literature_PMID=24034337;Oryzabase=15008;TENOR=Os05t0556800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	27691405	27691439	.	-	.	Parent=Os05t0556800-01
Chr05	irgsp1_rep	CDS	27690253	27691404	.	-	0	Parent=Os05t0556800-01
Chr05	irgsp1_rep	three_prime_UTR	27690004	27690252	.	-	.	Parent=Os05t0556800-01
Chr05	irgsp1_rep	mRNA	27695307	27697298	.	+	.	ID=Os05t0556900-01;Name=Os05t0556900-01;Locus_id=Os05g0556900;CGSNL Gene Symbol=RPL35A.3;CGSNL Gene Name=RIBOSOMAL PROTEIN L35A.3;Oryzabase Gene Symbol Synonym(s)=OsRPL35a.3%2C RPL35a.3;Oryzabase Gene Name Synonym(s)=ribosomal protein L35a.3%2C ribosomal protein large subunit 35a.3;Note=Ribosomal protein L35Ae family protein.;Transcript_evidence=AK102775 (DDBJ%2C Best hit),AK058689 (DDBJ%2C Best hit);ORF_evidence=B6T1L8 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L35A (IPR001780),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Ribosomal protein L35Ae%2C conserved site (IPR018266);NIAS_FLcDNA=J033107H21,001-019-B02;Oryzabase=22204;TENOR=Os05t0556900-01
Chr05	irgsp1_rep	five_prime_UTR	27695307	27695395	.	+	.	Parent=Os05t0556900-01
Chr05	irgsp1_rep	CDS	27695396	27695460	.	+	0	Parent=Os05t0556900-01
Chr05	irgsp1_rep	CDS	27695561	27695789	.	+	1	Parent=Os05t0556900-01
Chr05	irgsp1_rep	CDS	27695902	27695943	.	+	0	Parent=Os05t0556900-01
Chr05	irgsp1_rep	three_prime_UTR	27695944	27695954	.	+	.	Parent=Os05t0556900-01
Chr05	irgsp1_rep	three_prime_UTR	27696994	27697298	.	+	.	Parent=Os05t0556900-01
Chr05	irgsp1_rep	mRNA	27695715	27697176	.	+	.	ID=Os05t0556900-02;Name=Os05t0556900-02;Locus_id=Os05g0556900;CGSNL Gene Symbol=RPL35A.3;CGSNL Gene Name=RIBOSOMAL PROTEIN L35A.3;Oryzabase Gene Symbol Synonym(s)=OsRPL35a.3%2C RPL35a.3;Oryzabase Gene Name Synonym(s)=ribosomal protein L35a.3%2C ribosomal protein large subunit 35a.3;Note=Similar to 60S ribosomal protein l33-b (Fragment).;Transcript_evidence=AK058525 (DDBJ%2C Best hit);ORF_evidence=A6N1J9 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L35A (IPR001780),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000);NIAS_FLcDNA=001-017-A01;Oryzabase=22204;Expression=AK058525;TENOR=Os05t0556900-02;KEGG=Os05t0556900-02
Chr05	irgsp1_rep	CDS	27695715	27695789	.	+	0	Parent=Os05t0556900-02
Chr05	irgsp1_rep	CDS	27695902	27695943	.	+	0	Parent=Os05t0556900-02
Chr05	irgsp1_rep	three_prime_UTR	27695944	27695954	.	+	.	Parent=Os05t0556900-02
Chr05	irgsp1_rep	three_prime_UTR	27696994	27697176	.	+	.	Parent=Os05t0556900-02
Chr05	irgsp1_rep	mRNA	27699751	27701793	.	+	.	ID=Os05t0557000-01;Name=Os05t0557000-01;Locus_id=Os05g0557000;Oryzabase Gene Name Synonym(s)=Ribosomal protein L37a;Note=Similar to 60S ribosomal protein L37a.;Transcript_evidence=AK059395 (DDBJ%2C Best hit);ORF_evidence=NP_001147066.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L37ae (IPR002674),Ribosomal protein L37ae/L37e%2C N-terminal (IPR011331),Ribosomal protein%2C zinc-binding domain (IPR011332);NIAS_FLcDNA=001-027-A05;Oryzabase=17680;Expression=AK059395;TENOR=Os05t0557000-01;KEGG=Os05t0557000-01
Chr05	irgsp1_rep	five_prime_UTR	27699751	27699831	.	+	.	Parent=Os05t0557000-01
Chr05	irgsp1_rep	CDS	27699832	27699834	.	+	0	Parent=Os05t0557000-01
Chr05	irgsp1_rep	CDS	27700663	27700702	.	+	0	Parent=Os05t0557000-01
Chr05	irgsp1_rep	CDS	27700801	27700889	.	+	2	Parent=Os05t0557000-01
Chr05	irgsp1_rep	CDS	27701389	27701471	.	+	0	Parent=Os05t0557000-01
Chr05	irgsp1_rep	CDS	27701543	27701606	.	+	1	Parent=Os05t0557000-01
Chr05	irgsp1_rep	three_prime_UTR	27701607	27701793	.	+	.	Parent=Os05t0557000-01
Chr05	irgsp1_rep	mRNA	27702122	27705541	.	-	.	ID=Os05t0557100-01;Name=Os05t0557100-01;Locus_id=Os05g0557100;Note=Peptidase A1 domain containing protein.;Transcript_evidence=AK288916 (DDBJ%2C Best hit);ORF_evidence=NP_001056286.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J090081J15;TENOR=Os05t0557100-01;KEGG=Os05t0557100-01
Chr05	irgsp1_rep	five_prime_UTR	27705275	27705541	.	-	.	Parent=Os05t0557100-01
Chr05	irgsp1_rep	CDS	27704652	27705274	.	-	0	Parent=Os05t0557100-01
Chr05	irgsp1_rep	CDS	27702200	27703061	.	-	1	Parent=Os05t0557100-01
Chr05	irgsp1_rep	three_prime_UTR	27702122	27702199	.	-	.	Parent=Os05t0557100-01
Chr05	irgsp1_rep	mRNA	27712396	27717699	.	+	.	ID=Os05t0557200-01;Name=Os05t0557200-01;Locus_id=Os05g0557200;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=AK102111 (DDBJ%2C Best hit);ORF_evidence=B8AWH1 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding involved in protein folding (GO:0044183);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),26S proteasome non-ATPase regulatory subunit 5 (IPR019538);NIAS_FLcDNA=J033084F06;Expression=AK102111;TENOR=Os05t0557200-01;KEGG=Os05t0557200-01
Chr05	irgsp1_rep	five_prime_UTR	27712396	27712512	.	+	.	Parent=Os05t0557200-01
Chr05	irgsp1_rep	CDS	27712513	27712585	.	+	0	Parent=Os05t0557200-01
Chr05	irgsp1_rep	CDS	27713079	27713145	.	+	2	Parent=Os05t0557200-01
Chr05	irgsp1_rep	CDS	27713316	27713424	.	+	1	Parent=Os05t0557200-01
Chr05	irgsp1_rep	CDS	27713619	27713681	.	+	0	Parent=Os05t0557200-01
Chr05	irgsp1_rep	CDS	27713782	27713882	.	+	0	Parent=Os05t0557200-01
Chr05	irgsp1_rep	CDS	27713987	27714053	.	+	1	Parent=Os05t0557200-01
Chr05	irgsp1_rep	CDS	27714145	27714216	.	+	0	Parent=Os05t0557200-01
Chr05	irgsp1_rep	CDS	27714321	27714482	.	+	0	Parent=Os05t0557200-01
Chr05	irgsp1_rep	CDS	27715115	27715188	.	+	0	Parent=Os05t0557200-01
Chr05	irgsp1_rep	CDS	27715267	27715364	.	+	1	Parent=Os05t0557200-01
Chr05	irgsp1_rep	CDS	27715795	27715902	.	+	2	Parent=Os05t0557200-01
Chr05	irgsp1_rep	CDS	27716040	27716137	.	+	2	Parent=Os05t0557200-01
Chr05	irgsp1_rep	CDS	27716231	27716368	.	+	0	Parent=Os05t0557200-01
Chr05	irgsp1_rep	CDS	27716474	27716521	.	+	0	Parent=Os05t0557200-01
Chr05	irgsp1_rep	CDS	27716757	27716871	.	+	0	Parent=Os05t0557200-01
Chr05	irgsp1_rep	CDS	27717215	27717312	.	+	2	Parent=Os05t0557200-01
Chr05	irgsp1_rep	CDS	27717402	27717491	.	+	0	Parent=Os05t0557200-01
Chr05	irgsp1_rep	three_prime_UTR	27717492	27717699	.	+	.	Parent=Os05t0557200-01
Chr05	irgsp1_rep	mRNA	27712430	27717699	.	+	.	ID=Os05t0557200-02;Name=Os05t0557200-02;Locus_id=Os05g0557200;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=AK062090 (DDBJ%2C Best hit);ORF_evidence=B8AWH1 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding involved in protein folding (GO:0044183);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),26S proteasome non-ATPase regulatory subunit 5 (IPR019538);NIAS_FLcDNA=001-044-G10;Expression=AK062090;TENOR=Os05t0557200-02;KEGG=Os05t0557200-02
Chr05	irgsp1_rep	five_prime_UTR	27712430	27712512	.	+	.	Parent=Os05t0557200-02
Chr05	irgsp1_rep	CDS	27712513	27712585	.	+	0	Parent=Os05t0557200-02
Chr05	irgsp1_rep	CDS	27713079	27713145	.	+	2	Parent=Os05t0557200-02
Chr05	irgsp1_rep	CDS	27713316	27713424	.	+	1	Parent=Os05t0557200-02
Chr05	irgsp1_rep	CDS	27713619	27713681	.	+	0	Parent=Os05t0557200-02
Chr05	irgsp1_rep	CDS	27713782	27713882	.	+	0	Parent=Os05t0557200-02
Chr05	irgsp1_rep	CDS	27713987	27714053	.	+	1	Parent=Os05t0557200-02
Chr05	irgsp1_rep	CDS	27714145	27714216	.	+	0	Parent=Os05t0557200-02
Chr05	irgsp1_rep	CDS	27714321	27714482	.	+	0	Parent=Os05t0557200-02
Chr05	irgsp1_rep	CDS	27715115	27715188	.	+	0	Parent=Os05t0557200-02
Chr05	irgsp1_rep	CDS	27715267	27715364	.	+	1	Parent=Os05t0557200-02
Chr05	irgsp1_rep	CDS	27715795	27715902	.	+	2	Parent=Os05t0557200-02
Chr05	irgsp1_rep	CDS	27716040	27716137	.	+	2	Parent=Os05t0557200-02
Chr05	irgsp1_rep	CDS	27716231	27716368	.	+	0	Parent=Os05t0557200-02
Chr05	irgsp1_rep	CDS	27716474	27716521	.	+	0	Parent=Os05t0557200-02
Chr05	irgsp1_rep	CDS	27716757	27716871	.	+	0	Parent=Os05t0557200-02
Chr05	irgsp1_rep	CDS	27717215	27717312	.	+	2	Parent=Os05t0557200-02
Chr05	irgsp1_rep	CDS	27717402	27717491	.	+	0	Parent=Os05t0557200-02
Chr05	irgsp1_rep	three_prime_UTR	27717492	27717699	.	+	.	Parent=Os05t0557200-02
Chr05	irgsp1_rep	mRNA	27723402	27727472	.	-	.	ID=Os05t0557400-01;Name=Os05t0557400-01;Locus_id=Os05g0557400;Note=Membrane attack complex component/perforin/complement C9 family protein.;Transcript_evidence=AK069566 (DDBJ%2C Best hit);ORF_evidence=NP_564307.1 (RefSeq);InterPro=Membrane attack complex component/perforin (MACPF) domain (IPR020864);NIAS_FLcDNA=J023023J10;Expression=AK069566;TENOR=Os05t0557400-01;KEGG=Os05t0557400-01
Chr05	irgsp1_rep	five_prime_UTR	27727470	27727472	.	-	.	Parent=Os05t0557400-01
Chr05	irgsp1_rep	CDS	27727170	27727469	.	-	0	Parent=Os05t0557400-01
Chr05	irgsp1_rep	CDS	27726819	27727057	.	-	0	Parent=Os05t0557400-01
Chr05	irgsp1_rep	CDS	27726497	27726701	.	-	1	Parent=Os05t0557400-01
Chr05	irgsp1_rep	CDS	27725928	27725999	.	-	0	Parent=Os05t0557400-01
Chr05	irgsp1_rep	CDS	27725626	27725809	.	-	0	Parent=Os05t0557400-01
Chr05	irgsp1_rep	CDS	27725313	27725485	.	-	2	Parent=Os05t0557400-01
Chr05	irgsp1_rep	CDS	27724493	27725206	.	-	0	Parent=Os05t0557400-01
Chr05	irgsp1_rep	three_prime_UTR	27724414	27724492	.	-	.	Parent=Os05t0557400-01
Chr05	irgsp1_rep	three_prime_UTR	27723402	27723778	.	-	.	Parent=Os05t0557400-01
Chr05	irgsp1_rep	mRNA	27729604	27731098	.	-	.	ID=Os05t0557500-01;Name=Os05t0557500-01;Locus_id=Os05g0557500;Note=Protein of unknown function DUF2921 domain containing protein.;Transcript_evidence=AK067152 (DDBJ%2C Best hit);ORF_evidence=B9FLK1 (UniProt);InterPro=Protein of unknown function DUF2921 (IPR021319);NIAS_FLcDNA=J013096K21;TENOR=Os05t0557500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	27731097	27731098	.	-	.	Parent=Os05t0557500-01
Chr05	irgsp1_rep	CDS	27729759	27731096	.	-	0	Parent=Os05t0557500-01
Chr05	irgsp1_rep	three_prime_UTR	27729604	27729758	.	-	.	Parent=Os05t0557500-01
Chr05	irgsp1_rep	mRNA	27733895	27738318	.	-	.	ID=Os05t0557600-01;Name=Os05t0557600-01;Locus_id=Os05g0557600;CGSNL Gene Symbol=UBC41;CGSNL Gene Name=UBIQUITIN-CONJUGATING ENZYME 41;Oryzabase Gene Symbol Synonym(s)=OsUBC41;Oryzabase Gene Name Synonym(s)=Ubiquitin-conjugating enzyme 41;Note=Ubiquitin-conjugating enzyme/RWD-like domain containing protein.;Transcript_evidence=AK121717 (DDBJ%2C Best hit);ORF_evidence=Q5RLI8 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135);NIAS_FLcDNA=J033079L01;Oryzabase=19574;Expression=AK121717;TENOR=Os05t0557600-01;KEGG=Os05t0557600-01
Chr05	irgsp1_rep	five_prime_UTR	27738201	27738318	.	-	.	Parent=Os05t0557600-01
Chr05	irgsp1_rep	CDS	27738181	27738200	.	-	0	Parent=Os05t0557600-01
Chr05	irgsp1_rep	CDS	27737944	27738061	.	-	1	Parent=Os05t0557600-01
Chr05	irgsp1_rep	CDS	27736493	27736627	.	-	0	Parent=Os05t0557600-01
Chr05	irgsp1_rep	CDS	27735961	27736407	.	-	0	Parent=Os05t0557600-01
Chr05	irgsp1_rep	CDS	27735826	27735889	.	-	0	Parent=Os05t0557600-01
Chr05	irgsp1_rep	CDS	27735527	27735666	.	-	2	Parent=Os05t0557600-01
Chr05	irgsp1_rep	CDS	27735130	27735441	.	-	0	Parent=Os05t0557600-01
Chr05	irgsp1_rep	CDS	27734251	27734544	.	-	0	Parent=Os05t0557600-01
Chr05	irgsp1_rep	three_prime_UTR	27733895	27734250	.	-	.	Parent=Os05t0557600-01
Chr05	irgsp1_rep	mRNA	27740218	27747783	.	-	.	ID=Os05t0557700-01;Name=Os05t0557700-01;Locus_id=Os05g0557700;RAP-DB Gene Symbol Synonym(s)=LTN1%2C OsPHO2%2C PHO2.1%2C OsUBC35%2C UBC35;RAP-DB Gene Name Synonym(s)=LEAF TIP NECROSIS 1%2C Leaf tip necrosis1%2C Phosphate Overaccumulator2%2C PHOSPHATE2%2C Ubiquitin-conjugating enzyme 35;CGSNL Gene Symbol=LTN1;CGSNL Gene Name=LEAF TIP NECROSIS 1;Oryzabase Gene Symbol Synonym(s)=LTN1%2C OsPHO2%2C PHO2.1%2C PHO2.2%2C PHO2%2C OsUBC35%2C UBC35;Oryzabase Gene Name Synonym(s)=Leaf tip necrosis1%2C Phosphate Overaccumulator2%2C PHOSPHATE2%2C Ubiquitin-conjugating enzyme 35;Note=Ubiquitin-conjugating E2 enzyme%2C Phosphate homeostasis%2C Negative regulator of the inorganic phosphate (Pi)-starvation response-signaling pathway;Transcript_evidence=AK241747;ORF_evidence=B7F902;InterPro=Ubiquitin-conjugating enzyme/RWD-like (IPR016135),Ubiquitin-conjugating enzyme E2 (IPR000608);NIAS_FLcDNA=J065202E18;Manual Curation=January 10%2C 2017;Literature_PMID=27895204,24249833;Oryzabase=9255;TENOR=Os05t0557700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	27747352	27747783	.	-	.	Parent=Os05t0557700-01
Chr05	irgsp1_rep	five_prime_UTR	27744971	27745620	.	-	.	Parent=Os05t0557700-01
Chr05	irgsp1_rep	five_prime_UTR	27744738	27744868	.	-	.	Parent=Os05t0557700-01
Chr05	irgsp1_rep	five_prime_UTR	27744608	27744618	.	-	.	Parent=Os05t0557700-01
Chr05	irgsp1_rep	CDS	27743204	27744607	.	-	0	Parent=Os05t0557700-01
Chr05	irgsp1_rep	CDS	27742902	27743033	.	-	0	Parent=Os05t0557700-01
Chr05	irgsp1_rep	CDS	27742674	27742817	.	-	0	Parent=Os05t0557700-01
Chr05	irgsp1_rep	CDS	27742395	27742601	.	-	0	Parent=Os05t0557700-01
Chr05	irgsp1_rep	CDS	27742217	27742280	.	-	0	Parent=Os05t0557700-01
Chr05	irgsp1_rep	CDS	27741518	27741657	.	-	2	Parent=Os05t0557700-01
Chr05	irgsp1_rep	CDS	27741109	27741420	.	-	0	Parent=Os05t0557700-01
Chr05	irgsp1_rep	CDS	27740476	27740703	.	-	0	Parent=Os05t0557700-01
Chr05	irgsp1_rep	three_prime_UTR	27740218	27740475	.	-	.	Parent=Os05t0557700-01
Chr05	irgsp1_rep	mRNA	27740218	27749525	.	-	.	ID=Os05t0557700-02;Name=Os05t0557700-02;Locus_id=Os05g0557700;RAP-DB Gene Symbol Synonym(s)=LTN1%2C PHO2.2;RAP-DB Gene Name Synonym(s)=LEAF TIP NECROSIS 1;CGSNL Gene Symbol=LTN1;CGSNL Gene Name=LEAF TIP NECROSIS 1;Oryzabase Gene Symbol Synonym(s)=LTN1%2C OsPHO2%2C PHO2.1%2C PHO2.2%2C PHO2%2C OsUBC35%2C UBC35;Oryzabase Gene Name Synonym(s)=Leaf tip necrosis1%2C Phosphate Overaccumulator2%2C PHOSPHATE2%2C Ubiquitin-conjugating enzyme 35;Note=Pi starvation-induced isoform%2C Regulation of Pi homeostasis;Transcript_evidence=Inferred form literature;ORF_evidence=B7F902;InterPro=Ubiquitin-conjugating enzyme/RWD-like (IPR016135),Ubiquitin-conjugating enzyme E2 (IPR000608);Manual Curation=January 11%2C 2017;Literature_PMID=27895204,24249833;Oryzabase=9255
Chr05	irgsp1_rep	five_prime_UTR	27749377	27749525	.	-	.	Parent=Os05t0557700-02
Chr05	irgsp1_rep	five_prime_UTR	27744971	27745620	.	-	.	Parent=Os05t0557700-02
Chr05	irgsp1_rep	five_prime_UTR	27744738	27744868	.	-	.	Parent=Os05t0557700-02
Chr05	irgsp1_rep	five_prime_UTR	27744608	27744618	.	-	.	Parent=Os05t0557700-02
Chr05	irgsp1_rep	CDS	27743204	27744607	.	-	0	Parent=Os05t0557700-02
Chr05	irgsp1_rep	CDS	27742902	27743033	.	-	0	Parent=Os05t0557700-02
Chr05	irgsp1_rep	CDS	27742674	27742817	.	-	0	Parent=Os05t0557700-02
Chr05	irgsp1_rep	CDS	27742395	27742601	.	-	0	Parent=Os05t0557700-02
Chr05	irgsp1_rep	CDS	27742217	27742280	.	-	0	Parent=Os05t0557700-02
Chr05	irgsp1_rep	CDS	27741518	27741657	.	-	2	Parent=Os05t0557700-02
Chr05	irgsp1_rep	CDS	27741109	27741420	.	-	0	Parent=Os05t0557700-02
Chr05	irgsp1_rep	CDS	27740476	27740703	.	-	0	Parent=Os05t0557700-02
Chr05	irgsp1_rep	three_prime_UTR	27740218	27740475	.	-	.	Parent=Os05t0557700-02
Chr05	irgsp1_rep	mRNA	27756768	27759127	.	-	.	ID=Os05t0557800-01;Name=Os05t0557800-01;Locus_id=Os05g0557800;Oryzabase Gene Name Synonym(s)=chloroplast precursor of 50S ribosomal protein L21%2C chloroplast 50S ribosomal protein L21;Note=Similar to 50S ribosomal protein L21.;Transcript_evidence=AK105327 (DDBJ%2C Best hit);ORF_evidence=B6TJJ8 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L21 (IPR001787);NIAS_FLcDNA=001-118-A05;Oryzabase=11575;Expression=AK105327;TENOR=Os05t0557800-01;KEGG=Os05t0557800-01
Chr05	irgsp1_rep	five_prime_UTR	27759069	27759127	.	-	.	Parent=Os05t0557800-01
Chr05	irgsp1_rep	CDS	27758646	27759068	.	-	0	Parent=Os05t0557800-01
Chr05	irgsp1_rep	CDS	27758477	27758557	.	-	0	Parent=Os05t0557800-01
Chr05	irgsp1_rep	CDS	27757735	27757836	.	-	0	Parent=Os05t0557800-01
Chr05	irgsp1_rep	CDS	27756768	27756794	.	-	0	Parent=Os05t0557800-01
Chr05	irgsp1_rep	mRNA	27756096	27759127	.	-	.	ID=Os05t0557800-02;Name=Os05t0557800-02;Locus_id=Os05g0557800;Oryzabase Gene Name Synonym(s)=chloroplast precursor of 50S ribosomal protein L21%2C chloroplast 50S ribosomal protein L21;Note=Similar to 50S ribosomal protein L21%2C mitochondrial precursor.;Transcript_evidence=AK068460 (DDBJ%2C Best hit);ORF_evidence=B6TJJ8 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L21 (IPR001787),Ribosomal protein L21%2C conserved site (IPR018258);NIAS_FLcDNA=J013153H24;Oryzabase=11575;Expression=AK068460;TENOR=Os05t0557800-02;KEGG=Os05t0557800-02
Chr05	irgsp1_rep	five_prime_UTR	27759069	27759127	.	-	.	Parent=Os05t0557800-02
Chr05	irgsp1_rep	CDS	27758646	27759068	.	-	0	Parent=Os05t0557800-02
Chr05	irgsp1_rep	CDS	27758477	27758557	.	-	0	Parent=Os05t0557800-02
Chr05	irgsp1_rep	CDS	27757735	27757836	.	-	0	Parent=Os05t0557800-02
Chr05	irgsp1_rep	CDS	27756720	27756794	.	-	0	Parent=Os05t0557800-02
Chr05	irgsp1_rep	CDS	27756535	27756606	.	-	0	Parent=Os05t0557800-02
Chr05	irgsp1_rep	three_prime_UTR	27756096	27756534	.	-	.	Parent=Os05t0557800-02
Chr05	irgsp1_rep	mRNA	27759551	27763406	.	-	.	ID=Os05t0557900-01;Name=Os05t0557900-01;Locus_id=Os05g0557900;Oryzabase Gene Symbol Synonym(s)=OsEnS-79;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 79;Note=Esterase/lipase/thioesterase domain containing protein.;Transcript_evidence=AK103170 (DDBJ%2C Best hit);ORF_evidence=NP_001078060.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: O-acyltransferase activity (GO:0008374);InterPro=Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase (IPR003386);NIAS_FLcDNA=J033121F20;Oryzabase=18396;Expression=AK103170;TENOR=Os05t0557900-01;KEGG=Os05t0557900-01
Chr05	irgsp1_rep	five_prime_UTR	27763289	27763406	.	-	.	Parent=Os05t0557900-01
Chr05	irgsp1_rep	five_prime_UTR	27762744	27762796	.	-	.	Parent=Os05t0557900-01
Chr05	irgsp1_rep	CDS	27762674	27762743	.	-	0	Parent=Os05t0557900-01
Chr05	irgsp1_rep	CDS	27761684	27761891	.	-	2	Parent=Os05t0557900-01
Chr05	irgsp1_rep	CDS	27761479	27761583	.	-	1	Parent=Os05t0557900-01
Chr05	irgsp1_rep	CDS	27761238	27761366	.	-	1	Parent=Os05t0557900-01
Chr05	irgsp1_rep	CDS	27760951	27761000	.	-	1	Parent=Os05t0557900-01
Chr05	irgsp1_rep	CDS	27760777	27760874	.	-	2	Parent=Os05t0557900-01
Chr05	irgsp1_rep	CDS	27760383	27760667	.	-	0	Parent=Os05t0557900-01
Chr05	irgsp1_rep	CDS	27759713	27760216	.	-	0	Parent=Os05t0557900-01
Chr05	irgsp1_rep	three_prime_UTR	27759551	27759712	.	-	.	Parent=Os05t0557900-01
Chr05	irgsp1_rep	mRNA	27759724	27760670	.	+	.	ID=Os05t0557950-00;Name=Os05t0557950-00;Locus_id=Os05g0557950;Note=Hypothetical protein.;Transcript_evidence=EU949682 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0557950-00
Chr05	irgsp1_rep	five_prime_UTR	27759724	27759947	.	+	.	Parent=Os05t0557950-00
Chr05	irgsp1_rep	CDS	27759948	27760250	.	+	0	Parent=Os05t0557950-00
Chr05	irgsp1_rep	three_prime_UTR	27760251	27760297	.	+	.	Parent=Os05t0557950-00
Chr05	irgsp1_rep	three_prime_UTR	27760380	27760670	.	+	.	Parent=Os05t0557950-00
Chr05	irgsp1_rep	mRNA	27764857	27766656	.	-	.	ID=Os05t0558000-01;Name=Os05t0558000-01;Locus_id=Os05g0558000;Note=Ribosomal protein L1 family protein.;Transcript_evidence=AK073857 (DDBJ%2C Best hit);ORF_evidence=B6SGX4 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: large ribosomal subunit (GO:0015934),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L1 (IPR002143),Ribosomal protein L1%2C 2-layer alpha/beta-sandwich (IPR016094),Ribosomal protein L1%2C 3-layer alpha/beta-sandwich (IPR016095),Ribosomal protein L1%2C superfamily (IPR023674);NIAS_FLcDNA=J033074P11;Expression=AK073857;TENOR=Os05t0558000-01;KEGG=Os05t0558000-01
Chr05	irgsp1_rep	five_prime_UTR	27766591	27766656	.	-	.	Parent=Os05t0558000-01
Chr05	irgsp1_rep	CDS	27765343	27766590	.	-	0	Parent=Os05t0558000-01
Chr05	irgsp1_rep	three_prime_UTR	27764857	27765342	.	-	.	Parent=Os05t0558000-01
Chr05	irgsp1_rep	mRNA	27767491	27768992	.	+	.	ID=Os05t0558051-00;Name=Os05t0558051-00;Locus_id=Os05g0558051;Note=Non-protein coding transcript.;Transcript_evidence=EU953777 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0558051-00
Chr05	irgsp1_rep	exon	27767491	27767580	.	+	.	Parent=Os05t0558051-00
Chr05	irgsp1_rep	exon	27768769	27768992	.	+	.	Parent=Os05t0558051-00
Chr05	irgsp1_rep	mRNA	27775466	27776418	.	+	.	ID=Os05t0558101-00;Name=Os05t0558101-00;Locus_id=Os05g0558101;Note=Conserved hypothetical protein.;Transcript_evidence=EU957461 (DDBJ);ORF_evidence=Q6ZJX2 (UniProt);TENOR=Os05t0558101-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	27775466	27776014	.	+	0	Parent=Os05t0558101-00
Chr05	irgsp1_rep	three_prime_UTR	27776015	27776418	.	+	.	Parent=Os05t0558101-00
Chr05	irgsp1_rep	mRNA	27778798	27784774	.	+	.	ID=Os05t0558400-01;Name=Os05t0558400-01;Locus_id=Os05g0558400;Note=Similar to Branched-chain-amino-acid aminotransferase 3%2C chloroplast precursor (EC 2.6.1.42) (Atbcat-3).;Transcript_evidence=AK072756 (DDBJ%2C Best hit);ORF_evidence=A2ZA03 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: branched chain family amino acid metabolic process (GO:0009081),Molecular Function: catalytic activity (GO:0003824),Molecular Function: branched-chain-amino-acid transaminase activity (GO:0004084);InterPro=Aminotransferase%2C class IV (IPR001544),Branched-chain amino acid aminotransferase II (IPR005786),Aminotransferase%2C class IV%2C conserved site (IPR018300);NIAS_FLcDNA=J023138J17;Expression=AK072756;TENOR=Os05t0558400-01;KEGG=Os05t0558400-01 (EC:2.6.1.42)
Chr05	irgsp1_rep	five_prime_UTR	27778798	27779079	.	+	.	Parent=Os05t0558400-01
Chr05	irgsp1_rep	five_prime_UTR	27779978	27780226	.	+	.	Parent=Os05t0558400-01
Chr05	irgsp1_rep	CDS	27780227	27780337	.	+	0	Parent=Os05t0558400-01
Chr05	irgsp1_rep	CDS	27780592	27780680	.	+	0	Parent=Os05t0558400-01
Chr05	irgsp1_rep	CDS	27780819	27780993	.	+	1	Parent=Os05t0558400-01
Chr05	irgsp1_rep	CDS	27781115	27781291	.	+	0	Parent=Os05t0558400-01
Chr05	irgsp1_rep	CDS	27781387	27781518	.	+	0	Parent=Os05t0558400-01
Chr05	irgsp1_rep	CDS	27781790	27781888	.	+	0	Parent=Os05t0558400-01
Chr05	irgsp1_rep	CDS	27782302	27782418	.	+	0	Parent=Os05t0558400-01
Chr05	irgsp1_rep	CDS	27783252	27783347	.	+	0	Parent=Os05t0558400-01
Chr05	irgsp1_rep	CDS	27783742	27783854	.	+	0	Parent=Os05t0558400-01
Chr05	irgsp1_rep	CDS	27784401	27784521	.	+	1	Parent=Os05t0558400-01
Chr05	irgsp1_rep	three_prime_UTR	27784522	27784774	.	+	.	Parent=Os05t0558400-01
Chr05	irgsp1_rep	mRNA	27790142	27791094	.	+	.	ID=Os05t0558501-00;Name=Os05t0558501-00;Locus_id=Os05g0558501;Note=Conserved hypothetical protein.;Transcript_evidence=EU957461 (DDBJ);ORF_evidence=Q6ZJX2 (UniProt);TENOR=Os05t0558501-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	27790142	27790690	.	+	0	Parent=Os05t0558501-00
Chr05	irgsp1_rep	three_prime_UTR	27790691	27791094	.	+	.	Parent=Os05t0558501-00
Chr05	irgsp1_rep	mRNA	27794627	27798273	.	+	.	ID=Os05t0558800-01;Name=Os05t0558800-01;Locus_id=Os05g0558800;Oryzabase Gene Symbol Synonym(s)=OsNINJA1%2C NINJA1%2C OsNINJA2%2C OsNINJA%2C NINJA;Oryzabase Gene Name Synonym(s)=adaptor protein NINJA 1%2C adaptor protein NINJA 2%2C NOVEL INTERACTOR OF JAZ 1%2C NOVEL INTERACTOR OF JAZ 2;Note=Protein of unknown function DUF1675 family protein.;Transcript_evidence=AK072506 (DDBJ%2C Best hit);ORF_evidence=B6TCE8 (UniProt);InterPro=Protein of unknown function DUF1675 (IPR012463);NIAS_FLcDNA=J023127B18;Oryzabase=15067;Expression=AK072506;TENOR=Os05t0558800-01;KEGG=Os05t0558800-01
Chr05	irgsp1_rep	five_prime_UTR	27794627	27796247	.	+	.	Parent=Os05t0558800-01
Chr05	irgsp1_rep	CDS	27796248	27797241	.	+	0	Parent=Os05t0558800-01
Chr05	irgsp1_rep	CDS	27797695	27798056	.	+	2	Parent=Os05t0558800-01
Chr05	irgsp1_rep	three_prime_UTR	27798057	27798273	.	+	.	Parent=Os05t0558800-01
Chr05	irgsp1_rep	mRNA	27794644	27798357	.	+	.	ID=Os05t0558800-02;Name=Os05t0558800-02;Locus_id=Os05g0558800;RAP-DB Gene Symbol Synonym(s)=OsNINJA1;RAP-DB Gene Name Synonym(s)=Novel Interactor of JAZ 1;Oryzabase Gene Symbol Synonym(s)=OsNINJA1%2C NINJA1%2C OsNINJA2%2C OsNINJA%2C NINJA;Oryzabase Gene Name Synonym(s)=adaptor protein NINJA 1%2C adaptor protein NINJA 2%2C NOVEL INTERACTOR OF JAZ 1%2C NOVEL INTERACTOR OF JAZ 2;Note=JAZ-interacting adaptor protein%2C Negative regulation of OsMYC2-mediated JA signaling;Transcript_evidence=AK073985;ORF_evidence=Q6AT41;InterPro=Ethylene-responsive binding factor-associated repression (IPR012463),Jas TPL-binding domain (IPR032308);NIAS_FLcDNA=J033073D03;Manual Curation=February 14%2C 2019;Literature_PMID=30537605,25617318;Oryzabase=15067;Expression=AK073985;TENOR=Os05t0558800-02
Chr05	irgsp1_rep	five_prime_UTR	27794644	27794741	.	+	.	Parent=Os05t0558800-02
Chr05	irgsp1_rep	five_prime_UTR	27796133	27796247	.	+	.	Parent=Os05t0558800-02
Chr05	irgsp1_rep	CDS	27796248	27797241	.	+	0	Parent=Os05t0558800-02
Chr05	irgsp1_rep	CDS	27797695	27798056	.	+	2	Parent=Os05t0558800-02
Chr05	irgsp1_rep	three_prime_UTR	27798057	27798357	.	+	.	Parent=Os05t0558800-02
Chr05	irgsp1_rep	mRNA	27794664	27796994	.	+	.	ID=Os05t0558800-03;Name=Os05t0558800-03;Locus_id=Os05g0558800;Oryzabase Gene Symbol Synonym(s)=OsNINJA1%2C NINJA1%2C OsNINJA2%2C OsNINJA%2C NINJA;Oryzabase Gene Name Synonym(s)=adaptor protein NINJA 1%2C adaptor protein NINJA 2%2C NOVEL INTERACTOR OF JAZ 1%2C NOVEL INTERACTOR OF JAZ 2;Note=Similar to UPF0737 protein 8.;Transcript_evidence=AK066898 (DDBJ%2C Best hit);ORF_evidence=B6TCE8 (UniProt);NIAS_FLcDNA=J013092G17;Oryzabase=15067;Expression=AK066898;TENOR=Os05t0558800-03;KEGG=Os05t0558800-03
Chr05	irgsp1_rep	five_prime_UTR	27794664	27794741	.	+	.	Parent=Os05t0558800-03
Chr05	irgsp1_rep	five_prime_UTR	27796133	27796247	.	+	.	Parent=Os05t0558800-03
Chr05	irgsp1_rep	CDS	27796248	27796994	.	+	0	Parent=Os05t0558800-03
Chr05	irgsp1_rep	mRNA	27800947	27807426	.	+	.	ID=Os05t0558900-01;Name=Os05t0558900-01;Locus_id=Os05g0558900;Oryzabase Gene Symbol Synonym(s)=PAL11;Oryzabase Gene Name Synonym(s)=phenylalanine ammonia-lyase 11;Note=Similar to Frsb-prov protein.;Transcript_evidence=AK101679 (DDBJ%2C Best hit);ORF_evidence=B6SHI1 (UniProt);GO=Biological Process: phenylalanyl-tRNA aminoacylation (GO:0006432),Biological Process: tRNA aminoacylation (GO:0043039),Cellular Component: cytoplasm (GO:0005737),Molecular Function: tRNA binding (GO:0000049),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: RNA binding (GO:0003723),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: phenylalanine-tRNA ligase activity (GO:0004826),Molecular Function: ATP binding (GO:0005524);InterPro=Phenylalanyl-tRNA synthetase (IPR002319),Phenylalanyl-tRNA synthetase%2C class IIc%2C beta subunit%2C archae/euk cytosolic (IPR004531),B3/B4 tRNA-binding domain (IPR005146),tRNA synthetase%2C B5-domain (IPR005147),DNA binding domain%2C putative (IPR009061);NIAS_FLcDNA=J033058I10;Oryzabase=18081;Expression=AK101679;TENOR=Os05t0558900-01;KEGG=Os05t0558900-01 (EC:6.1.1.20)
Chr05	irgsp1_rep	five_prime_UTR	27800947	27801033	.	+	.	Parent=Os05t0558900-01
Chr05	irgsp1_rep	CDS	27801034	27801091	.	+	0	Parent=Os05t0558900-01
Chr05	irgsp1_rep	CDS	27801193	27801248	.	+	2	Parent=Os05t0558900-01
Chr05	irgsp1_rep	CDS	27801348	27801457	.	+	0	Parent=Os05t0558900-01
Chr05	irgsp1_rep	CDS	27802473	27802602	.	+	1	Parent=Os05t0558900-01
Chr05	irgsp1_rep	CDS	27802785	27802900	.	+	0	Parent=Os05t0558900-01
Chr05	irgsp1_rep	CDS	27802995	27803061	.	+	1	Parent=Os05t0558900-01
Chr05	irgsp1_rep	CDS	27803293	27803334	.	+	0	Parent=Os05t0558900-01
Chr05	irgsp1_rep	CDS	27803477	27803518	.	+	0	Parent=Os05t0558900-01
Chr05	irgsp1_rep	CDS	27803680	27803756	.	+	0	Parent=Os05t0558900-01
Chr05	irgsp1_rep	CDS	27804054	27804180	.	+	1	Parent=Os05t0558900-01
Chr05	irgsp1_rep	CDS	27804277	27804444	.	+	0	Parent=Os05t0558900-01
Chr05	irgsp1_rep	CDS	27804683	27804808	.	+	0	Parent=Os05t0558900-01
Chr05	irgsp1_rep	CDS	27804899	27805009	.	+	0	Parent=Os05t0558900-01
Chr05	irgsp1_rep	CDS	27805100	27805234	.	+	0	Parent=Os05t0558900-01
Chr05	irgsp1_rep	CDS	27805864	27805938	.	+	0	Parent=Os05t0558900-01
Chr05	irgsp1_rep	CDS	27806151	27806258	.	+	0	Parent=Os05t0558900-01
Chr05	irgsp1_rep	CDS	27806339	27806425	.	+	0	Parent=Os05t0558900-01
Chr05	irgsp1_rep	CDS	27806511	27806597	.	+	0	Parent=Os05t0558900-01
Chr05	irgsp1_rep	CDS	27807086	27807154	.	+	0	Parent=Os05t0558900-01
Chr05	irgsp1_rep	three_prime_UTR	27807155	27807426	.	+	.	Parent=Os05t0558900-01
Chr05	irgsp1_rep	mRNA	27807398	27809694	.	-	.	ID=Os05t0559000-01;Name=Os05t0559000-01;Locus_id=Os05g0559000;Note=Galactose oxidase/kelch%2C beta-propeller domain containing protein.;Transcript_evidence=AK100171 (DDBJ%2C Best hit);ORF_evidence=NP_001148082.1 (RefSeq);InterPro=Glyoxal oxidase%2C N-terminal (IPR009880),Galactose oxidase/kelch%2C beta-propeller (IPR011043),Immunoglobulin-like fold (IPR013783),Immunoglobulin E-set (IPR014756),Domain of unknown function DUF1929 (IPR015202),Galactose oxidase%2C beta-propeller (IPR015916);NIAS_FLcDNA=J023025H05;Expression=AK100171;TENOR=Os05t0559000-01;KEGG=Os05t0559000-01
Chr05	irgsp1_rep	five_prime_UTR	27809500	27809694	.	-	.	Parent=Os05t0559000-01
Chr05	irgsp1_rep	CDS	27807631	27809499	.	-	0	Parent=Os05t0559000-01
Chr05	irgsp1_rep	three_prime_UTR	27807398	27807630	.	-	.	Parent=Os05t0559000-01
Chr05	irgsp1_rep	mRNA	27807525	27808715	.	-	.	ID=Os05t0559000-02;Name=Os05t0559000-02;Locus_id=Os05g0559000;Note=Similar to glyoxal oxidase.;Transcript_evidence=AK071304 (DDBJ%2C Best hit);ORF_evidence=NP_001148082.1 (RefSeq);InterPro=Glyoxal oxidase%2C N-terminal (IPR009880),Galactose oxidase/kelch%2C beta-propeller (IPR011043),Immunoglobulin-like fold (IPR013783),Immunoglobulin E-set (IPR014756),Domain of unknown function DUF1929 (IPR015202),Galactose oxidase%2C beta-propeller (IPR015916);NIAS_FLcDNA=J023087E18;Expression=AK071304;TENOR=Os05t0559000-02;KEGG=Os05t0559000-02
Chr05	irgsp1_rep	five_prime_UTR	27808714	27808715	.	-	.	Parent=Os05t0559000-02
Chr05	irgsp1_rep	CDS	27807631	27808713	.	-	0	Parent=Os05t0559000-02
Chr05	irgsp1_rep	three_prime_UTR	27807525	27807630	.	-	.	Parent=Os05t0559000-02
Chr05	irgsp1_rep	mRNA	27832999	27834526	.	-	.	ID=Os05t0559316-00;Name=Os05t0559316-00;Locus_id=Os05g0559316;Oryzabase Gene Symbol Synonym(s)=OsSPEAR6%2C SPEAR6;Oryzabase Gene Name Synonym(s)="SPL-like%2C EAR-containing protein 6";Note=Hypothetical conserved gene.;Transcript_evidence=AK251403 (DDBJ);ORF_evidence=B9FLK6 (UniProt);Oryzabase=22333;TENOR=Os05t0559316-00;KEGG=Os05t0559316-00
Chr05	irgsp1_rep	CDS	27834302	27834526	.	-	0	Parent=Os05t0559316-00
Chr05	irgsp1_rep	CDS	27834075	27834176	.	-	0	Parent=Os05t0559316-00
Chr05	irgsp1_rep	CDS	27833350	27833352	.	-	0	Parent=Os05t0559316-00
Chr05	irgsp1_rep	three_prime_UTR	27833211	27833349	.	-	.	Parent=Os05t0559316-00
Chr05	irgsp1_rep	three_prime_UTR	27832999	27833105	.	-	.	Parent=Os05t0559316-00
Chr05	irgsp1_rep	mRNA	27839324	27840565	.	-	.	ID=Os05t0559350-00;Name=Os05t0559350-00;Locus_id=Os05g0559350;Note=Similar to binding.;Transcript_evidence=FP092724 (DDBJ);ORF_evidence=A2Y7D4 (UniProt);TENOR=Os05t0559350-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	27840463	27840565	.	-	.	Parent=Os05t0559350-00
Chr05	irgsp1_rep	CDS	27839377	27840462	.	-	0	Parent=Os05t0559350-00
Chr05	irgsp1_rep	three_prime_UTR	27839324	27839376	.	-	.	Parent=Os05t0559350-00
Chr05	irgsp1_rep	mRNA	27846200	27850391	.	-	.	ID=Os05t0559400-01;Name=Os05t0559400-01;Locus_id=Os05g0559400;CGSNL Gene Symbol=IAA19;Oryzabase Gene Symbol Synonym(s)=OsIAA19;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 19%2C Auxin-responsive Aux/IAA gene family member 19;Note=Similar to IAA11 (Fragment).;Transcript_evidence=AK106181 (DDBJ%2C Best hit);ORF_evidence=Q6AT33 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Aux/IAA-ARF-dimerisation (IPR011525);NIAS_FLcDNA=001-208-D03;Oryzabase=10908;TENOR=Os05t0559400-01
Chr05	irgsp1_rep	five_prime_UTR	27850268	27850391	.	-	.	Parent=Os05t0559400-01
Chr05	irgsp1_rep	CDS	27849894	27850267	.	-	0	Parent=Os05t0559400-01
Chr05	irgsp1_rep	CDS	27849005	27849234	.	-	1	Parent=Os05t0559400-01
Chr05	irgsp1_rep	CDS	27848059	27848200	.	-	2	Parent=Os05t0559400-01
Chr05	irgsp1_rep	CDS	27847291	27847352	.	-	1	Parent=Os05t0559400-01
Chr05	irgsp1_rep	CDS	27846491	27846528	.	-	2	Parent=Os05t0559400-01
Chr05	irgsp1_rep	three_prime_UTR	27846200	27846490	.	-	.	Parent=Os05t0559400-01
Chr05	irgsp1_rep	mRNA	27846200	27850352	.	-	.	ID=Os05t0559400-02;Name=Os05t0559400-02;Locus_id=Os05g0559400;CGSNL Gene Symbol=IAA19;Oryzabase Gene Symbol Synonym(s)=OsIAA19;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 19%2C Auxin-responsive Aux/IAA gene family member 19;Note=Similar to IAA11 (Fragment).;Transcript_evidence=AK061439 (DDBJ%2C Best hit),AK099253 (DDBJ%2C Best hit),AK109363 (DDBJ%2C Best hit);ORF_evidence=Q6AT33 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Aux/IAA-ARF-dimerisation (IPR011525);NIAS_FLcDNA=006-307-B11,J013168H04,006-206-E12;Oryzabase=10908;TENOR=Os05t0559400-02
Chr05	irgsp1_rep	five_prime_UTR	27850268	27850352	.	-	.	Parent=Os05t0559400-02
Chr05	irgsp1_rep	CDS	27849894	27850267	.	-	0	Parent=Os05t0559400-02
Chr05	irgsp1_rep	CDS	27849005	27849234	.	-	1	Parent=Os05t0559400-02
Chr05	irgsp1_rep	CDS	27848059	27848200	.	-	2	Parent=Os05t0559400-02
Chr05	irgsp1_rep	CDS	27847291	27847352	.	-	1	Parent=Os05t0559400-02
Chr05	irgsp1_rep	CDS	27846491	27846528	.	-	2	Parent=Os05t0559400-02
Chr05	irgsp1_rep	three_prime_UTR	27846200	27846490	.	-	.	Parent=Os05t0559400-02
Chr05	irgsp1_rep	mRNA	27846193	27850311	.	-	.	ID=Os05t0559400-03;Name=Os05t0559400-03;Locus_id=Os05g0559400;CGSNL Gene Symbol=IAA19;Oryzabase Gene Symbol Synonym(s)=OsIAA19;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 19%2C Auxin-responsive Aux/IAA gene family member 19;Note=Similar to IAA11 (Fragment).;Transcript_evidence=AK104018 (DDBJ%2C Best hit);ORF_evidence=Q6AT33 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Aux/IAA-ARF-dimerisation (IPR011525);NIAS_FLcDNA=001-007-H11;Oryzabase=10908;TENOR=Os05t0559400-03
Chr05	irgsp1_rep	five_prime_UTR	27850268	27850311	.	-	.	Parent=Os05t0559400-03
Chr05	irgsp1_rep	CDS	27849894	27850267	.	-	0	Parent=Os05t0559400-03
Chr05	irgsp1_rep	CDS	27849005	27849234	.	-	1	Parent=Os05t0559400-03
Chr05	irgsp1_rep	CDS	27848059	27848200	.	-	2	Parent=Os05t0559400-03
Chr05	irgsp1_rep	CDS	27847291	27847352	.	-	1	Parent=Os05t0559400-03
Chr05	irgsp1_rep	CDS	27846491	27846528	.	-	2	Parent=Os05t0559400-03
Chr05	irgsp1_rep	three_prime_UTR	27846193	27846490	.	-	.	Parent=Os05t0559400-03
Chr05	irgsp1_rep	mRNA	27860628	27865020	.	+	.	ID=Os05t0559600-01;Name=Os05t0559600-01;Locus_id=Os05g0559600;Oryzabase Gene Symbol Synonym(s)=OsGT43E;Oryzabase Gene Name Synonym(s)=glycosyltransferase family GT43 member E;Note=Glycosyl transferase%2C family 43 protein.;Transcript_evidence=AK068237 (DDBJ%2C Best hit);ORF_evidence=Q4VYU4 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity (GO:0015018);InterPro=Glycosyl transferase%2C family 43 (IPR005027);NIAS_FLcDNA=J013148K06;Oryzabase=15261;Expression=AK068237;TENOR=Os05t0559600-01;KEGG=Os05t0559600-01
Chr05	irgsp1_rep	five_prime_UTR	27860628	27860791	.	+	.	Parent=Os05t0559600-01
Chr05	irgsp1_rep	five_prime_UTR	27861071	27861186	.	+	.	Parent=Os05t0559600-01
Chr05	irgsp1_rep	CDS	27861187	27862112	.	+	0	Parent=Os05t0559600-01
Chr05	irgsp1_rep	CDS	27863510	27863768	.	+	1	Parent=Os05t0559600-01
Chr05	irgsp1_rep	CDS	27864317	27864487	.	+	0	Parent=Os05t0559600-01
Chr05	irgsp1_rep	three_prime_UTR	27864488	27864534	.	+	.	Parent=Os05t0559600-01
Chr05	irgsp1_rep	three_prime_UTR	27864648	27865020	.	+	.	Parent=Os05t0559600-01
Chr05	irgsp1_rep	mRNA	27867716	27868234	.	+	.	ID=Os05t0559800-00;Name=Os05t0559800-00;Locus_id=Os05g0559800;Oryzabase Gene Symbol Synonym(s)=OsEnS-80;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 80;Note=Conserved hypothetical protein.;Transcript_evidence=EU953527 (DDBJ);ORF_evidence=NP_001056302.2 (RefSeq);Oryzabase=18397;TENOR=Os05t0559800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	27867716	27868234	.	+	0	Parent=Os05t0559800-00
Chr05	irgsp1_rep	mRNA	27868472	27877526	.	-	.	ID=Os05t0559900-01;Name=Os05t0559900-01;Locus_id=Os05g0559900;RAP-DB Gene Symbol Synonym(s)=OsTMF;RAP-DB Gene Name Synonym(s)=TATA modulatory factor;Oryzabase Gene Symbol Synonym(s)=SIP25;Oryzabase Gene Name Synonym(s)=SKIP interacting protein 25%2C SKIPa-interacting protein 25%2C SKIPa-interacting protein 25;Note=Homologue of the human TATA modulatory factor (TMF)%2C Transcription activator%2C Negative regulation of cold tolerance through modification of cell wall properties;Transcript_evidence=AK067197;ORF_evidence=Q6AT30;InterPro=TATA element modulatory factor 1 DNA binding (IPR022092),TATA element modulatory factor 1%2C TATA binding (IPR022091);NIAS_FLcDNA=J013098O16;Manual Curation=May 20%2C 2020;Literature_PMID=32176820;Oryzabase=9957;Expression=AK067197;TENOR=Os05t0559900-01;KEGG=Os05t0559900-01;Subcellular location=nucleus (GO:0005634), Golgi apparatus (GO:0005794)
Chr05	irgsp1_rep	five_prime_UTR	27877082	27877526	.	-	.	Parent=Os05t0559900-01
Chr05	irgsp1_rep	CDS	27876937	27877081	.	-	0	Parent=Os05t0559900-01
Chr05	irgsp1_rep	CDS	27875268	27876448	.	-	2	Parent=Os05t0559900-01
Chr05	irgsp1_rep	CDS	27874551	27874622	.	-	0	Parent=Os05t0559900-01
Chr05	irgsp1_rep	CDS	27874282	27874356	.	-	0	Parent=Os05t0559900-01
Chr05	irgsp1_rep	CDS	27873766	27873880	.	-	0	Parent=Os05t0559900-01
Chr05	irgsp1_rep	CDS	27873249	27873311	.	-	2	Parent=Os05t0559900-01
Chr05	irgsp1_rep	CDS	27873113	27873159	.	-	2	Parent=Os05t0559900-01
Chr05	irgsp1_rep	CDS	27872365	27872649	.	-	0	Parent=Os05t0559900-01
Chr05	irgsp1_rep	CDS	27872153	27872212	.	-	0	Parent=Os05t0559900-01
Chr05	irgsp1_rep	CDS	27871978	27872061	.	-	0	Parent=Os05t0559900-01
Chr05	irgsp1_rep	CDS	27871763	27871828	.	-	0	Parent=Os05t0559900-01
Chr05	irgsp1_rep	CDS	27871227	27871325	.	-	0	Parent=Os05t0559900-01
Chr05	irgsp1_rep	CDS	27870890	27871108	.	-	0	Parent=Os05t0559900-01
Chr05	irgsp1_rep	CDS	27870123	27870210	.	-	0	Parent=Os05t0559900-01
Chr05	irgsp1_rep	CDS	27869788	27870011	.	-	2	Parent=Os05t0559900-01
Chr05	irgsp1_rep	CDS	27869553	27869612	.	-	0	Parent=Os05t0559900-01
Chr05	irgsp1_rep	CDS	27869358	27869471	.	-	0	Parent=Os05t0559900-01
Chr05	irgsp1_rep	CDS	27868986	27869060	.	-	0	Parent=Os05t0559900-01
Chr05	irgsp1_rep	CDS	27868871	27868897	.	-	0	Parent=Os05t0559900-01
Chr05	irgsp1_rep	three_prime_UTR	27868472	27868870	.	-	.	Parent=Os05t0559900-01
Chr05	irgsp1_rep	mRNA	27868482	27871075	.	-	.	ID=Os05t0559900-02;Name=Os05t0559900-02;Locus_id=Os05g0559900;CGSNL Gene Symbol=SIP25;CGSNL Gene Name=SKIP INTERACTING PROTEIN 25;Oryzabase Gene Symbol Synonym(s)=OsSIP25%2C OsTMF%2C TMF;Oryzabase Gene Name Synonym(s)=SKIP interacting protein 25%2C SKIPa-interacting protein 25%2C SKIPa-interacting protein 25%2C TATA modulatory factor;Note=Similar to SKIP interacting protein 25.;Transcript_evidence=AK062036 (DDBJ%2C Best hit);ORF_evidence=B8Q8B1 (UniProt);InterPro=TATA element modulatory factor 1 TATA binding (IPR022091);NIAS_FLcDNA=001-043-H08;Oryzabase=9957;Expression=AK062036;TENOR=Os05t0559900-02;KEGG=Os05t0559900-02
Chr05	irgsp1_rep	five_prime_UTR	27870998	27871075	.	-	.	Parent=Os05t0559900-02
Chr05	irgsp1_rep	CDS	27870890	27870997	.	-	0	Parent=Os05t0559900-02
Chr05	irgsp1_rep	CDS	27870123	27870210	.	-	0	Parent=Os05t0559900-02
Chr05	irgsp1_rep	CDS	27869788	27870011	.	-	2	Parent=Os05t0559900-02
Chr05	irgsp1_rep	CDS	27869553	27869612	.	-	0	Parent=Os05t0559900-02
Chr05	irgsp1_rep	CDS	27869358	27869471	.	-	0	Parent=Os05t0559900-02
Chr05	irgsp1_rep	CDS	27868986	27869060	.	-	0	Parent=Os05t0559900-02
Chr05	irgsp1_rep	CDS	27868871	27868897	.	-	0	Parent=Os05t0559900-02
Chr05	irgsp1_rep	three_prime_UTR	27868482	27868870	.	-	.	Parent=Os05t0559900-02
Chr05	irgsp1_rep	mRNA	27878662	27879543	.	+	.	ID=Os05t0560000-01;Name=Os05t0560000-01;Locus_id=Os05g0560000;CGSNL Gene Symbol=PSAH;CGSNL Gene Name=PHOTOSYSTEM I SUBUNIT;Oryzabase Gene Symbol Synonym(s)=PsaH%2C GOS5%2C OsPSAH%2C OsGOS5;Oryzabase Gene Name Synonym(s)=PSI subunit PsaH%2C photosystem I subunit PsaH;Note=Photosystem I reaction center subunit VI%2C chloroplast precursor (PSI- H) (Light-harvesting complex I 11 kDa protein) (GOS5 protein).;Transcript_evidence=AK061603 (DDBJ%2C Best hit),AK060254 (DDBJ%2C Best hit);ORF_evidence=Q0DG05 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem I (GO:0009522),Cellular Component: photosystem I reaction center (GO:0009538);InterPro=Photosystem I PsaH%2C reaction centre subunit VI (IPR004928);NIAS_FLcDNA=001-029-E09,001-004-E03;Oryzabase=9590;TENOR=Os05t0560000-01
Chr05	irgsp1_rep	five_prime_UTR	27878662	27878732	.	+	.	Parent=Os05t0560000-01
Chr05	irgsp1_rep	CDS	27878733	27878851	.	+	0	Parent=Os05t0560000-01
Chr05	irgsp1_rep	CDS	27878980	27879109	.	+	1	Parent=Os05t0560000-01
Chr05	irgsp1_rep	CDS	27879188	27879367	.	+	0	Parent=Os05t0560000-01
Chr05	irgsp1_rep	three_prime_UTR	27879368	27879543	.	+	.	Parent=Os05t0560000-01
Chr05	irgsp1_rep	mRNA	27880066	27882840	.	-	.	ID=Os05t0560100-01;Name=Os05t0560100-01;Locus_id=Os05g0560100;RAP-DB Gene Symbol Synonym(s)=OsRopGEF2;RAP-DB Gene Name Synonym(s)=Guanine nucleotide exchange factor for ROP 2;CGSNL Gene Symbol=ROPGEF2;CGSNL Gene Name=ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 2;Oryzabase Gene Symbol Synonym(s)=Os RopGEF2%2C OsRopGEF2%2C RopGEF2%2C OsSTA159;Oryzabase Gene Name Synonym(s)=GEF for ROP 2%2C guanine nucleotide exchange factor for Rop 2%2C Rop-specific GEF2%2C Rop-specific guanine nucleotide exchange factor 2;Note=Guanine nucleotide exchange factor for Rho-type GTPase of plant (ROP/Rac)%2C Pollen germination%2C Pollen tube growth;Transcript_evidence=AK072239;ORF_evidence=Q688Y9;GO=Molecular Function: Rho guanyl-nucleotide exchange factor activity (GO:0005089);InterPro=PRONE domain (IPR005512);NIAS_FLcDNA=J023003G05;Manual Curation=March 9%2C 2020;Literature_PMID=32131749;Oryzabase=11444;Expression=AK072239;TENOR=Os05t0560100-01;KEGG=Os05t0560100-01;Subcellular location=cytosol (GO:0005829), plasma membrane (GO:0005886)
Chr05	irgsp1_rep	five_prime_UTR	27882812	27882840	.	-	.	Parent=Os05t0560100-01
Chr05	irgsp1_rep	CDS	27882472	27882811	.	-	0	Parent=Os05t0560100-01
Chr05	irgsp1_rep	CDS	27882259	27882375	.	-	2	Parent=Os05t0560100-01
Chr05	irgsp1_rep	CDS	27882007	27882161	.	-	2	Parent=Os05t0560100-01
Chr05	irgsp1_rep	CDS	27881604	27881678	.	-	0	Parent=Os05t0560100-01
Chr05	irgsp1_rep	CDS	27881224	27881496	.	-	0	Parent=Os05t0560100-01
Chr05	irgsp1_rep	CDS	27880799	27881119	.	-	0	Parent=Os05t0560100-01
Chr05	irgsp1_rep	CDS	27880268	27880696	.	-	0	Parent=Os05t0560100-01
Chr05	irgsp1_rep	three_prime_UTR	27880066	27880267	.	-	.	Parent=Os05t0560100-01
Chr05	irgsp1_rep	mRNA	27883739	27884410	.	-	.	ID=Os05t0560200-00;Name=Os05t0560200-00;Locus_id=Os05g0560200;RAP-DB Gene Symbol Synonym(s)=OsDOG1L-2;RAP-DB Gene Name Synonym(s)=DOG1-like-2;Oryzabase Gene Symbol Synonym(s)=OsDOG1L-3;Oryzabase Gene Name Synonym(s)=OsDOG1-like-3;Note=Similar to tumor-related protein-like.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001152723.1 (RefSeq);Manual Curation=August 21%2C 2020;Literature_PMID=32771171;Oryzabase=14287;TENOR=Os05t0560200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	27883739	27884410	.	-	0	Parent=Os05t0560200-00
Chr05	irgsp1_rep	mRNA	27886611	27889407	.	-	.	ID=Os05t0560300-01;Name=Os05t0560300-01;Locus_id=Os05g0560300;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK065592 (DDBJ%2C Best hit);ORF_evidence=NP_193599.3 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J013027G15;Expression=AK065592;TENOR=Os05t0560300-01;KEGG=Os05t0560300-01
Chr05	irgsp1_rep	five_prime_UTR	27889062	27889407	.	-	.	Parent=Os05t0560300-01
Chr05	irgsp1_rep	five_prime_UTR	27888838	27888929	.	-	.	Parent=Os05t0560300-01
Chr05	irgsp1_rep	CDS	27888402	27888837	.	-	0	Parent=Os05t0560300-01
Chr05	irgsp1_rep	CDS	27888042	27888232	.	-	2	Parent=Os05t0560300-01
Chr05	irgsp1_rep	CDS	27887812	27887944	.	-	0	Parent=Os05t0560300-01
Chr05	irgsp1_rep	CDS	27887557	27887711	.	-	2	Parent=Os05t0560300-01
Chr05	irgsp1_rep	CDS	27887161	27887346	.	-	0	Parent=Os05t0560300-01
Chr05	irgsp1_rep	CDS	27886780	27887043	.	-	0	Parent=Os05t0560300-01
Chr05	irgsp1_rep	three_prime_UTR	27886611	27886779	.	-	.	Parent=Os05t0560300-01
Chr05	irgsp1_rep	mRNA	27892619	27895727	.	+	.	ID=Os05t0560400-00;Name=Os05t0560400-00;Locus_id=Os05g0560400;Oryzabase Gene Symbol Synonym(s)=OsTLP11%2C OsTLP10%2C OsFbox278%2C Os_F0631;Oryzabase Gene Name Synonym(s)=tubby-like protein 11%2C tubby-like protein 10%2C F-box protein 278;Note=Tubby family protein.;Transcript_evidence=tplb0011g12 (Wheat FLcDNA);ORF_evidence=Q688Y7 (UniProt);InterPro=Tubby%2C C-terminal (IPR000007),Tubby%2C C-terminal%2C conserved site (IPR018066);Oryzabase=14713;TENOR=Os05t0560400-00;KEGG=Os05t0560400-00
Chr05	irgsp1_rep	five_prime_UTR	27892619	27892621	.	+	.	Parent=Os05t0560400-00
Chr05	irgsp1_rep	CDS	27892622	27892885	.	+	0	Parent=Os05t0560400-00
Chr05	irgsp1_rep	CDS	27893541	27893628	.	+	0	Parent=Os05t0560400-00
Chr05	irgsp1_rep	CDS	27894215	27894344	.	+	2	Parent=Os05t0560400-00
Chr05	irgsp1_rep	CDS	27895114	27895690	.	+	1	Parent=Os05t0560400-00
Chr05	irgsp1_rep	three_prime_UTR	27895691	27895727	.	+	.	Parent=Os05t0560400-00
Chr05	irgsp1_rep	mRNA	27896047	27896647	.	-	.	ID=Os05t0560500-01;Name=Os05t0560500-01;Locus_id=Os05g0560500;Note=Conserved hypothetical protein.;Transcript_evidence=AK105233 (DDBJ%2C Best hit);ORF_evidence=A2Y7E4 (UniProt);NIAS_FLcDNA=001-112-F01;Expression=AK105233;TENOR=Os05t0560500-01;KEGG=Os05t0560500-01
Chr05	irgsp1_rep	five_prime_UTR	27896585	27896647	.	-	.	Parent=Os05t0560500-01
Chr05	irgsp1_rep	CDS	27896461	27896584	.	-	0	Parent=Os05t0560500-01
Chr05	irgsp1_rep	CDS	27896241	27896356	.	-	2	Parent=Os05t0560500-01
Chr05	irgsp1_rep	three_prime_UTR	27896047	27896240	.	-	.	Parent=Os05t0560500-01
Chr05	irgsp1_rep	mRNA	27899055	27902494	.	+	.	ID=Os05t0560600-01;Name=Os05t0560600-01;Locus_id=Os05g0560600;CGSNL Gene Symbol=MSL25;CGSNL Gene Name=MYB/SANT-LIKE 25;Oryzabase Gene Symbol Synonym(s)=OsMSL25%2C OsMSL25a%2C OsMSL25b;Oryzabase Gene Name Synonym(s)=Myb/SANT-LIKE 25;Note=Homeodomain-like containing protein.;Transcript_evidence=AK122091 (DDBJ%2C Best hit);ORF_evidence=B4FRR8 (UniProt);GO=Molecular Function: DNA binding (GO:0003677);InterPro=SANT domain%2C DNA binding (IPR001005);NIAS_FLcDNA=J033124C04;Oryzabase=22937;Expression=AK122091;TENOR=Os05t0560600-01;KEGG=Os05t0560600-01
Chr05	irgsp1_rep	five_prime_UTR	27899055	27899603	.	+	.	Parent=Os05t0560600-01
Chr05	irgsp1_rep	CDS	27899604	27900644	.	+	0	Parent=Os05t0560600-01
Chr05	irgsp1_rep	three_prime_UTR	27900645	27900662	.	+	.	Parent=Os05t0560600-01
Chr05	irgsp1_rep	three_prime_UTR	27902069	27902494	.	+	.	Parent=Os05t0560600-01
Chr05	irgsp1_rep	mRNA	27899487	27902332	.	+	.	ID=Os05t0560600-02;Name=Os05t0560600-02;Locus_id=Os05g0560600;CGSNL Gene Symbol=MSL25;CGSNL Gene Name=MYB/SANT-LIKE 25;Oryzabase Gene Symbol Synonym(s)=OsMSL25%2C OsMSL25a%2C OsMSL25b;Oryzabase Gene Name Synonym(s)=Myb/SANT-LIKE 25;Note=Homeodomain-like containing protein.;Transcript_evidence=AK067862 (DDBJ%2C Best hit);ORF_evidence=B4FRR8 (UniProt);GO=Molecular Function: DNA binding (GO:0003677);InterPro=SANT domain%2C DNA binding (IPR001005);NIAS_FLcDNA=J013124K11;Oryzabase=22937;Expression=AK067862;TENOR=Os05t0560600-02;KEGG=Os05t0560600-02
Chr05	irgsp1_rep	five_prime_UTR	27899487	27899603	.	+	.	Parent=Os05t0560600-02
Chr05	irgsp1_rep	CDS	27899604	27900644	.	+	0	Parent=Os05t0560600-02
Chr05	irgsp1_rep	three_prime_UTR	27900645	27900662	.	+	.	Parent=Os05t0560600-02
Chr05	irgsp1_rep	three_prime_UTR	27902069	27902332	.	+	.	Parent=Os05t0560600-02
Chr05	irgsp1_rep	mRNA	27899898	27900667	.	-	.	ID=Os05t0560750-00;Name=Os05t0560750-00;Locus_id=Os05g0560750;Note=Hypothetical gene.;Transcript_evidence=BT016575 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0560750-00;KEGG=Os05t0560750-00
Chr05	irgsp1_rep	five_prime_UTR	27900555	27900667	.	-	.	Parent=Os05t0560750-00
Chr05	irgsp1_rep	CDS	27900309	27900554	.	-	0	Parent=Os05t0560750-00
Chr05	irgsp1_rep	three_prime_UTR	27899898	27900308	.	-	.	Parent=Os05t0560750-00
Chr05	irgsp1_rep	mRNA	27910754	27912924	.	-	.	ID=Os05t0560900-01;Name=Os05t0560900-01;Locus_id=Os05g0560900;CGSNL Gene Symbol=GA2OX8;CGSNL Gene Name=GIBBERELLIN 2-OXIDASE 8;Oryzabase Gene Symbol Synonym(s)=OsGA2ox8;Note=Similar to gibberellin 2-beta-dioxygenase.;Transcript_evidence=AK063973 (DDBJ%2C Best hit);ORF_evidence=F2VSI9 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Isopenicillin N synthase (IPR002283),Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=001-124-B08;Oryzabase=9084;Expression=AK063973;TENOR=Os05t0560900-01;KEGG=Os05t0560900-01
Chr05	irgsp1_rep	five_prime_UTR	27912799	27912924	.	-	.	Parent=Os05t0560900-01
Chr05	irgsp1_rep	CDS	27912019	27912798	.	-	0	Parent=Os05t0560900-01
Chr05	irgsp1_rep	CDS	27911502	27911532	.	-	0	Parent=Os05t0560900-01
Chr05	irgsp1_rep	CDS	27911251	27911453	.	-	2	Parent=Os05t0560900-01
Chr05	irgsp1_rep	three_prime_UTR	27910754	27911250	.	-	.	Parent=Os05t0560900-01
Chr05	irgsp1_rep	mRNA	27910801	27912922	.	-	.	ID=Os05t0560900-02;Name=Os05t0560900-02;Locus_id=Os05g0560900;CGSNL Gene Symbol=GA2OX8;CGSNL Gene Name=GIBBERELLIN 2-OXIDASE 8;Oryzabase Gene Symbol Synonym(s)=OsGA2ox8;Note=Isopenicillin N synthase family protein.;Transcript_evidence=AK101758 (DDBJ%2C Best hit);ORF_evidence=F2VSI7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Isopenicillin N synthase (IPR002283),Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=J033063M08;Oryzabase=9084;Expression=AK101758;TENOR=Os05t0560900-02;KEGG=Os05t0560900-02
Chr05	irgsp1_rep	five_prime_UTR	27912799	27912922	.	-	.	Parent=Os05t0560900-02
Chr05	irgsp1_rep	CDS	27912019	27912798	.	-	0	Parent=Os05t0560900-02
Chr05	irgsp1_rep	CDS	27911251	27911532	.	-	0	Parent=Os05t0560900-02
Chr05	irgsp1_rep	three_prime_UTR	27910801	27911250	.	-	.	Parent=Os05t0560900-02
Chr05	irgsp1_rep	mRNA	27912018	27912782	.	+	.	ID=Os05t0561000-00;Name=Os05t0561000-00;Locus_id=Os05g0561000;Note=Hypothetical protein.;Transcript_evidence=BT038748 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0561000-00
Chr05	irgsp1_rep	five_prime_UTR	27912018	27912018	.	+	.	Parent=Os05t0561000-00
Chr05	irgsp1_rep	CDS	27912019	27912782	.	+	0	Parent=Os05t0561000-00
Chr05	irgsp1_rep	mRNA	27935448	27935675	.	+	.	ID=Os05t0561400-00;Name=Os05t0561400-00;Locus_id=Os05g0561400;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001056313.1 (RefSeq);TENOR=Os05t0561400-00;KEGG=Os05t0561400-00
Chr05	irgsp1_rep	CDS	27935448	27935675	.	+	0	Parent=Os05t0561400-00
Chr05	irgsp1_rep	mRNA	27936171	27939342	.	-	.	ID=Os05t0561500-01;Name=Os05t0561500-01;Locus_id=Os05g0561500;Note=Similar to CMP-KDO synthetase (EC 2.7.7.38) (Fragment).;Transcript_evidence=AK061788 (DDBJ%2C Best hit),AK098862 (DDBJ%2C Best hit);ORF_evidence=NP_001105657.1 (RefSeq);GO=Biological Process: lipopolysaccharide biosynthetic process (GO:0009103),Cellular Component: cytoplasm (GO:0005737),Molecular Function: 3-deoxy-manno-octulosonate cytidylyltransferase activity (GO:0008690);InterPro=Acylneuraminate cytidylyltransferase (IPR003329),3-deoxy-D-manno-octulosonate cytidylyltransferase (IPR004528);NIAS_FLcDNA=001-039-E12,J013000O09;Expression=AK061788;TENOR=Os05t0561500-01;KEGG=Os05t0561500-01 (EC:2.7.7.38)
Chr05	irgsp1_rep	five_prime_UTR	27939273	27939342	.	-	.	Parent=Os05t0561500-01
Chr05	irgsp1_rep	CDS	27939033	27939272	.	-	0	Parent=Os05t0561500-01
Chr05	irgsp1_rep	CDS	27938178	27938223	.	-	0	Parent=Os05t0561500-01
Chr05	irgsp1_rep	CDS	27937839	27937925	.	-	2	Parent=Os05t0561500-01
Chr05	irgsp1_rep	CDS	27937623	27937747	.	-	2	Parent=Os05t0561500-01
Chr05	irgsp1_rep	CDS	27937220	27937359	.	-	0	Parent=Os05t0561500-01
Chr05	irgsp1_rep	CDS	27937089	27937140	.	-	1	Parent=Os05t0561500-01
Chr05	irgsp1_rep	CDS	27936873	27936983	.	-	0	Parent=Os05t0561500-01
Chr05	irgsp1_rep	CDS	27936451	27936543	.	-	0	Parent=Os05t0561500-01
Chr05	irgsp1_rep	three_prime_UTR	27936171	27936450	.	-	.	Parent=Os05t0561500-01
Chr05	irgsp1_rep	mRNA	27944014	27947970	.	+	.	ID=Os05t0561600-01;Name=Os05t0561600-01;Locus_id=Os05g0561600;Note=Protein of unknown function DUF1421 domain containing protein.;Transcript_evidence=AK241065 (DDBJ%2C Best hit);ORF_evidence=A2Y7F4 (UniProt);InterPro=Protein of unknown function DUF1421 (IPR010820);NIAS_FLcDNA=J065065L20;TENOR=Os05t0561600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	27944014	27944201	.	+	.	Parent=Os05t0561600-01
Chr05	irgsp1_rep	CDS	27944202	27944303	.	+	0	Parent=Os05t0561600-01
Chr05	irgsp1_rep	CDS	27945150	27945425	.	+	0	Parent=Os05t0561600-01
Chr05	irgsp1_rep	CDS	27946428	27947606	.	+	0	Parent=Os05t0561600-01
Chr05	irgsp1_rep	three_prime_UTR	27947607	27947970	.	+	.	Parent=Os05t0561600-01
Chr05	irgsp1_rep	mRNA	27949348	27949570	.	-	.	ID=Os05t0561700-00;Name=Os05t0561700-00;Locus_id=Os05g0561700;Note=Non-protein coding transcript.;Transcript_evidence=CT836439 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os05t0561700-00
Chr05	irgsp1_rep	exon	27949348	27949570	.	-	.	Parent=Os05t0561700-00
Chr05	irgsp1_rep	mRNA	27950781	27955317	.	-	.	ID=Os05t0561800-01;Name=Os05t0561800-01;Locus_id=Os05g0561800;Note=Hypothetical conserved gene.;Transcript_evidence=AK241105 (DDBJ%2C Best hit);ORF_evidence=B8AWQ4 (UniProt);NIAS_FLcDNA=J065079J07;TENOR=Os05t0561800-01;KEGG=Os05t0561800-01
Chr05	irgsp1_rep	CDS	27955090	27955317	.	-	0	Parent=Os05t0561800-01
Chr05	irgsp1_rep	CDS	27953750	27953839	.	-	0	Parent=Os05t0561800-01
Chr05	irgsp1_rep	CDS	27953370	27953642	.	-	0	Parent=Os05t0561800-01
Chr05	irgsp1_rep	three_prime_UTR	27953363	27953369	.	-	.	Parent=Os05t0561800-01
Chr05	irgsp1_rep	three_prime_UTR	27953131	27953214	.	-	.	Parent=Os05t0561800-01
Chr05	irgsp1_rep	three_prime_UTR	27952712	27952888	.	-	.	Parent=Os05t0561800-01
Chr05	irgsp1_rep	three_prime_UTR	27952556	27952627	.	-	.	Parent=Os05t0561800-01
Chr05	irgsp1_rep	three_prime_UTR	27952243	27952471	.	-	.	Parent=Os05t0561800-01
Chr05	irgsp1_rep	three_prime_UTR	27951960	27952155	.	-	.	Parent=Os05t0561800-01
Chr05	irgsp1_rep	three_prime_UTR	27951769	27951863	.	-	.	Parent=Os05t0561800-01
Chr05	irgsp1_rep	three_prime_UTR	27951402	27951665	.	-	.	Parent=Os05t0561800-01
Chr05	irgsp1_rep	three_prime_UTR	27951247	27951322	.	-	.	Parent=Os05t0561800-01
Chr05	irgsp1_rep	three_prime_UTR	27950781	27951156	.	-	.	Parent=Os05t0561800-01
Chr05	irgsp1_rep	mRNA	27956108	27956530	.	+	.	ID=Os05t0561900-00;Name=Os05t0561900-00;Locus_id=Os05g0561900;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001056317.1 (RefSeq);TENOR=Os05t0561900-00;KEGG=Os05t0561900-00
Chr05	irgsp1_rep	CDS	27956108	27956530	.	+	0	Parent=Os05t0561900-00
Chr05	irgsp1_rep	mRNA	27958358	27960858	.	-	.	ID=Os05t0562000-01;Name=Os05t0562000-01;Locus_id=Os05g0562000;Note=Conserved hypothetical protein.;Transcript_evidence=AK073575 (DDBJ%2C Best hit);ORF_evidence=B8AWQ6 (UniProt);NIAS_FLcDNA=J033046C07;TENOR=Os05t0562000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	27960749	27960858	.	-	.	Parent=Os05t0562000-01
Chr05	irgsp1_rep	CDS	27960745	27960748	.	-	0	Parent=Os05t0562000-01
Chr05	irgsp1_rep	CDS	27960408	27960633	.	-	2	Parent=Os05t0562000-01
Chr05	irgsp1_rep	CDS	27960123	27960318	.	-	1	Parent=Os05t0562000-01
Chr05	irgsp1_rep	CDS	27959371	27959469	.	-	0	Parent=Os05t0562000-01
Chr05	irgsp1_rep	CDS	27959157	27959282	.	-	0	Parent=Os05t0562000-01
Chr05	irgsp1_rep	three_prime_UTR	27959025	27959156	.	-	.	Parent=Os05t0562000-01
Chr05	irgsp1_rep	three_prime_UTR	27958856	27958931	.	-	.	Parent=Os05t0562000-01
Chr05	irgsp1_rep	three_prime_UTR	27958358	27958759	.	-	.	Parent=Os05t0562000-01
Chr05	irgsp1_rep	mRNA	27967637	27970823	.	-	.	ID=Os05t0562200-01;Name=Os05t0562200-01;Locus_id=Os05g0562200;Oryzabase Gene Symbol Synonym(s)=OsDi19-1;Oryzabase Gene Name Synonym(s)=drought-induced 19-1;Note=Drought induced 19 family protein.;Transcript_evidence=AK061766 (DDBJ%2C Best hit),AK109438 (DDBJ%2C Best hit);ORF_evidence=Q688X9 (UniProt);InterPro=Drought induced 19/ RING finger protein 114 (IPR008598);NIAS_FLcDNA=001-039-B10,006-310-F07;Oryzabase=18576;Expression=AK061766;TENOR=Os05t0562200-01;KEGG=Os05t0562200-01
Chr05	irgsp1_rep	five_prime_UTR	27970595	27970823	.	-	.	Parent=Os05t0562200-01
Chr05	irgsp1_rep	CDS	27970522	27970594	.	-	0	Parent=Os05t0562200-01
Chr05	irgsp1_rep	CDS	27970250	27970389	.	-	2	Parent=Os05t0562200-01
Chr05	irgsp1_rep	CDS	27969136	27969213	.	-	0	Parent=Os05t0562200-01
Chr05	irgsp1_rep	CDS	27968700	27968980	.	-	0	Parent=Os05t0562200-01
Chr05	irgsp1_rep	CDS	27968114	27968222	.	-	1	Parent=Os05t0562200-01
Chr05	irgsp1_rep	three_prime_UTR	27967637	27968113	.	-	.	Parent=Os05t0562200-01
Chr05	irgsp1_rep	mRNA	27972462	27974607	.	-	.	ID=Os05t0562300-01;Name=Os05t0562300-01;Locus_id=Os05g0562300;Oryzabase Gene Symbol Synonym(s)=OsDjB7%2C DjB7;Oryzabase Gene Name Synonym(s)=DnaJ domain protein B7;Note=Similar to DnaJ-like protein.;Transcript_evidence=AK067414 (DDBJ%2C Best hit);ORF_evidence=NP_001149016.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Chaperone DnaJ%2C C-terminal (IPR002939),Heat shock protein DnaJ (IPR003095),HSP40/DnaJ peptide-binding (IPR008971),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=J013101C03;Oryzabase=12155;Expression=AK067414;TENOR=Os05t0562300-01;KEGG=Os05t0562300-01
Chr05	irgsp1_rep	five_prime_UTR	27974446	27974607	.	-	.	Parent=Os05t0562300-01
Chr05	irgsp1_rep	CDS	27974281	27974445	.	-	0	Parent=Os05t0562300-01
Chr05	irgsp1_rep	CDS	27973681	27974165	.	-	0	Parent=Os05t0562300-01
Chr05	irgsp1_rep	CDS	27972664	27973102	.	-	1	Parent=Os05t0562300-01
Chr05	irgsp1_rep	three_prime_UTR	27972462	27972663	.	-	.	Parent=Os05t0562300-01
Chr05	irgsp1_rep	mRNA	27973664	27974717	.	+	.	ID=Os05t0562350-00;Name=Os05t0562350-00;Locus_id=Os05g0562350;Note=Hypothetical gene.;Transcript_evidence=EU943056 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0562350-00;KEGG=Os05t0562350-00
Chr05	irgsp1_rep	five_prime_UTR	27973664	27973664	.	+	.	Parent=Os05t0562350-00
Chr05	irgsp1_rep	CDS	27973665	27974306	.	+	0	Parent=Os05t0562350-00
Chr05	irgsp1_rep	three_prime_UTR	27974307	27974717	.	+	.	Parent=Os05t0562350-00
Chr05	irgsp1_rep	mRNA	27975701	27983968	.	-	.	ID=Os05t0562400-01;Name=Os05t0562400-01;Locus_id=Os05g0562400;Note=DDT domain containing protein.;Transcript_evidence=AK121237 (DDBJ%2C Best hit);ORF_evidence=A2Q504 (UniProt);InterPro=DDT domain (IPR004022),DDT domain%2C subgroup (IPR018500),DDT domain superfamily (IPR018501);NIAS_FLcDNA=J023095K21;Expression=AK121237;TENOR=Os05t0562400-01;KEGG=Os05t0562400-01
Chr05	irgsp1_rep	five_prime_UTR	27983961	27983968	.	-	.	Parent=Os05t0562400-01
Chr05	irgsp1_rep	CDS	27983946	27983960	.	-	0	Parent=Os05t0562400-01
Chr05	irgsp1_rep	CDS	27983709	27983873	.	-	0	Parent=Os05t0562400-01
Chr05	irgsp1_rep	CDS	27983396	27983618	.	-	0	Parent=Os05t0562400-01
Chr05	irgsp1_rep	CDS	27982534	27982634	.	-	2	Parent=Os05t0562400-01
Chr05	irgsp1_rep	CDS	27982340	27982426	.	-	0	Parent=Os05t0562400-01
Chr05	irgsp1_rep	CDS	27981849	27981989	.	-	0	Parent=Os05t0562400-01
Chr05	irgsp1_rep	CDS	27981591	27981746	.	-	0	Parent=Os05t0562400-01
Chr05	irgsp1_rep	CDS	27980774	27980983	.	-	0	Parent=Os05t0562400-01
Chr05	irgsp1_rep	CDS	27979990	27980697	.	-	0	Parent=Os05t0562400-01
Chr05	irgsp1_rep	CDS	27979373	27979921	.	-	0	Parent=Os05t0562400-01
Chr05	irgsp1_rep	CDS	27977951	27978574	.	-	0	Parent=Os05t0562400-01
Chr05	irgsp1_rep	CDS	27977753	27977857	.	-	0	Parent=Os05t0562400-01
Chr05	irgsp1_rep	CDS	27976949	27977212	.	-	0	Parent=Os05t0562400-01
Chr05	irgsp1_rep	CDS	27975929	27976774	.	-	0	Parent=Os05t0562400-01
Chr05	irgsp1_rep	three_prime_UTR	27975701	27975928	.	-	.	Parent=Os05t0562400-01
Chr05	irgsp1_rep	mRNA	27975677	27980584	.	-	.	ID=Os05t0562400-02;Name=Os05t0562400-02;Locus_id=Os05g0562400;Note=Hypothetical conserved gene.;Transcript_evidence=AK059222 (DDBJ%2C Best hit);ORF_evidence=B9FI45 (UniProt);NIAS_FLcDNA=001-024-D04;Expression=AK059222;TENOR=Os05t0562400-02;KEGG=Os05t0562400-02
Chr05	irgsp1_rep	five_prime_UTR	27980584	27980584	.	-	.	Parent=Os05t0562400-02
Chr05	irgsp1_rep	CDS	27980308	27980583	.	-	0	Parent=Os05t0562400-02
Chr05	irgsp1_rep	CDS	27978171	27978191	.	-	0	Parent=Os05t0562400-02
Chr05	irgsp1_rep	three_prime_UTR	27977951	27978170	.	-	.	Parent=Os05t0562400-02
Chr05	irgsp1_rep	three_prime_UTR	27977753	27977857	.	-	.	Parent=Os05t0562400-02
Chr05	irgsp1_rep	three_prime_UTR	27976949	27977212	.	-	.	Parent=Os05t0562400-02
Chr05	irgsp1_rep	three_prime_UTR	27975677	27976774	.	-	.	Parent=Os05t0562400-02
Chr05	irgsp1_rep	mRNA	27989751	27990665	.	-	.	ID=Os05t0562800-01;Name=Os05t0562800-01;Locus_id=Os05g0562800;Note=Protein of unknown function DUF679 family protein.;Transcript_evidence=AK064046 (DDBJ%2C Best hit);ORF_evidence=Q688X6 (UniProt);InterPro=Protein of unknown function DUF679 (IPR007770);NIAS_FLcDNA=001-125-D08;Expression=AK064046;TENOR=Os05t0562800-01;KEGG=Os05t0562800-01
Chr05	irgsp1_rep	CDS	27990599	27990665	.	-	0	Parent=Os05t0562800-01
Chr05	irgsp1_rep	CDS	27989918	27990090	.	-	2	Parent=Os05t0562800-01
Chr05	irgsp1_rep	three_prime_UTR	27989751	27989917	.	-	.	Parent=Os05t0562800-01
Chr05	irgsp1_rep	mRNA	27989751	27990665	.	-	.	ID=Os05t0562800-02;Name=Os05t0562800-02;Locus_id=Os05g0562800;Note=Similar to predicted protein.;Transcript_evidence=AK072829 (DDBJ%2C Best hit);ORF_evidence=B8AWR0 (UniProt);InterPro=Protein of unknown function DUF679 (IPR007770);NIAS_FLcDNA=J023138F22;Expression=AK072829;TENOR=Os05t0562800-02;KEGG=Os05t0562800-02
Chr05	irgsp1_rep	five_prime_UTR	27990635	27990665	.	-	.	Parent=Os05t0562800-02
Chr05	irgsp1_rep	CDS	27989918	27990634	.	-	0	Parent=Os05t0562800-02
Chr05	irgsp1_rep	three_prime_UTR	27989751	27989917	.	-	.	Parent=Os05t0562800-02
Chr05	irgsp1_rep	mRNA	28003165	28004999	.	+	.	ID=Os05t0563000-01;Name=Os05t0563000-01;Locus_id=Os05g0563000;RAP-DB Gene Symbol Synonym(s)=OsSND2;RAP-DB Gene Name Synonym(s)=SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2;CGSNL Gene Symbol=NAC62;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 62;Oryzabase Gene Symbol Synonym(s)=ONAC062%2C ONAC62%2C OsSND2%2C SND2;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 062%2C NAC domain-containing protein 62%2C SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN2%2C SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2;Note=NAC family transcription factor%2C Secondary cell wall biosynthesis%2C Positive regulator of cellulose biosynthesis;Transcript_evidence=AK100983;ORF_evidence=Q6AUG9;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=NAC domain superfamily (IPR036093),NAC domain (IPR003441);NIAS_FLcDNA=J023145A15;Manual Curation=June 5%2C 2018;Literature_PMID=29855737;Oryzabase=11491;Expression=AK100983;TENOR=Os05t0563000-01;KEGG=Os05t0563000-01;Subcellular location=nucleus (GO:0005634)
Chr05	irgsp1_rep	five_prime_UTR	28003165	28003494	.	+	.	Parent=Os05t0563000-01
Chr05	irgsp1_rep	CDS	28003495	28003656	.	+	0	Parent=Os05t0563000-01
Chr05	irgsp1_rep	CDS	28003835	28004030	.	+	0	Parent=Os05t0563000-01
Chr05	irgsp1_rep	CDS	28004150	28004736	.	+	2	Parent=Os05t0563000-01
Chr05	irgsp1_rep	three_prime_UTR	28004737	28004999	.	+	.	Parent=Os05t0563000-01
Chr05	irgsp1_rep	mRNA	28005260	28007054	.	-	.	ID=Os05t0563050-01;Name=Os05t0563050-01;Locus_id=Os05g0563050;Note=Similar to predicted protein.;Transcript_evidence=AK242124 (DDBJ%2C Best hit);ORF_evidence=B9FI48 (UniProt);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Guanylate-binding protein%2C C-terminal (IPR003191);NIAS_FLcDNA=J075147N21;TENOR=Os05t0563050-01;KEGG=Os05t0563050-01
Chr05	irgsp1_rep	CDS	28006689	28007054	.	-	0	Parent=Os05t0563050-01
Chr05	irgsp1_rep	CDS	28006526	28006603	.	-	0	Parent=Os05t0563050-01
Chr05	irgsp1_rep	CDS	28005408	28006448	.	-	0	Parent=Os05t0563050-01
Chr05	irgsp1_rep	three_prime_UTR	28005260	28005407	.	-	.	Parent=Os05t0563050-01
Chr05	irgsp1_rep	mRNA	28009513	28010606	.	-	.	ID=Os05t0563100-01;Name=Os05t0563100-01;Locus_id=Os05g0563100;Note=Similar to GTP binding / GTPase.;Transcript_evidence=AK110699 (DDBJ%2C Best hit);ORF_evidence=NP_199419.2 (RefSeq);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Guanylate-binding protein%2C N-terminal (IPR015894);NIAS_FLcDNA=002-170-B06;TENOR=Os05t0563100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	28010581	28010606	.	-	.	Parent=Os05t0563100-01
Chr05	irgsp1_rep	CDS	28010335	28010580	.	-	0	Parent=Os05t0563100-01
Chr05	irgsp1_rep	CDS	28010112	28010225	.	-	0	Parent=Os05t0563100-01
Chr05	irgsp1_rep	CDS	28009768	28009986	.	-	0	Parent=Os05t0563100-01
Chr05	irgsp1_rep	three_prime_UTR	28009513	28009767	.	-	.	Parent=Os05t0563100-01
Chr05	irgsp1_rep	mRNA	28024635	28025384	.	-	.	ID=Os05t0563300-01;Name=Os05t0563300-01;Locus_id=Os05g0563300;Note=Conserved hypothetical protein.;Transcript_evidence=AK072939 (DDBJ%2C Best hit);ORF_evidence=NP_001175867.1 (RefSeq);NIAS_FLcDNA=J033000K07;Expression=AK072939;TENOR=Os05t0563300-01;KEGG=Os05t0563300-01
Chr05	irgsp1_rep	five_prime_UTR	28025166	28025384	.	-	.	Parent=Os05t0563300-01
Chr05	irgsp1_rep	CDS	28024929	28025165	.	-	0	Parent=Os05t0563300-01
Chr05	irgsp1_rep	three_prime_UTR	28024635	28024928	.	-	.	Parent=Os05t0563300-01
Chr05	irgsp1_rep	mRNA	28034380	28039732	.	+	.	ID=Os05t0563400-01;Name=Os05t0563400-01;Locus_id=Os05g0563400;RAP-DB Gene Symbol Synonym(s)=OsARF15%2C OsETTIN1%2C OsARF3-1;RAP-DB Gene Name Synonym(s)=auxin response factor 15;Oryzabase Gene Symbol Synonym(s)=OsARF15%2C ARF15%2C ETT1%2C OsETT1%2C ARF3b%2C OsARF3-1%2C ARF3-1%2C OsARF3%2C ARF3%2C DLN154%2C OsDLN154;Oryzabase Gene Name Synonym(s)=auxin response factor-15%2C auxin response factor 15%2C OsETTIN1%2C DLN repressor 154%2C DLN motif protein 154;Note=Auxin response factor%2C Transcription factor%2C Regulation of lateral root growth;Transcript_evidence=AK099793,AB071290;ORF_evidence=Q8S985;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Biological Process: response to hormone (GO:0009725),Molecular Function: DNA binding (GO:0003677),Cellular Component: nucleus (GO:0005634);InterPro=DNA-binding pseudobarrel domain superfamily (IPR015300),B3 DNA binding domain (IPR003340),Auxin response factor (IPR010525);NIAS_FLcDNA=J013097E23;Manual Curation=November 2%2C 2018;Literature_PMID=30373525,23449645,17408882,11922106;Oryzabase=9995;Expression=AK099793;TENOR=Os05t0563400-01;KEGG=Os05t0563400-01
Chr05	irgsp1_rep	five_prime_UTR	28034380	28034602	.	+	.	Parent=Os05t0563400-01
Chr05	irgsp1_rep	CDS	28034603	28034887	.	+	0	Parent=Os05t0563400-01
Chr05	irgsp1_rep	CDS	28034977	28035033	.	+	0	Parent=Os05t0563400-01
Chr05	irgsp1_rep	CDS	28035142	28035312	.	+	0	Parent=Os05t0563400-01
Chr05	irgsp1_rep	CDS	28035427	28035511	.	+	0	Parent=Os05t0563400-01
Chr05	irgsp1_rep	CDS	28036137	28036227	.	+	2	Parent=Os05t0563400-01
Chr05	irgsp1_rep	CDS	28036301	28036465	.	+	1	Parent=Os05t0563400-01
Chr05	irgsp1_rep	CDS	28036889	28037008	.	+	1	Parent=Os05t0563400-01
Chr05	irgsp1_rep	CDS	28037100	28037172	.	+	1	Parent=Os05t0563400-01
Chr05	irgsp1_rep	CDS	28038051	28038210	.	+	0	Parent=Os05t0563400-01
Chr05	irgsp1_rep	CDS	28038294	28039159	.	+	2	Parent=Os05t0563400-01
Chr05	irgsp1_rep	CDS	28039232	28039297	.	+	0	Parent=Os05t0563400-01
Chr05	irgsp1_rep	three_prime_UTR	28039298	28039362	.	+	.	Parent=Os05t0563400-01
Chr05	irgsp1_rep	three_prime_UTR	28039449	28039732	.	+	.	Parent=Os05t0563400-01
Chr05	irgsp1_rep	mRNA	28038050	28039748	.	+	.	ID=Os05t0563400-02;Name=Os05t0563400-02;Locus_id=Os05g0563400;Oryzabase Gene Symbol Synonym(s)=OsARF15%2C ARF15%2C ETT1%2C OsETT1%2C ARF3b%2C OsARF3-1%2C ARF3-1%2C OsARF3%2C ARF3%2C DLN154%2C OsDLN154;Oryzabase Gene Name Synonym(s)=auxin response factor-15%2C auxin response factor 15%2C OsETTIN1%2C DLN repressor 154%2C DLN motif protein 154;Note=Similar to Auxin response factor 15.;Transcript_evidence=AK062170 (DDBJ%2C Best hit);ORF_evidence=Q8S985 (UniProt);NIAS_FLcDNA=001-046-C02;Manual Curation=November 2%2C 2018;Oryzabase=9995;Expression=AK062170;TENOR=Os05t0563400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	28038050	28038200	.	+	.	Parent=Os05t0563400-02
Chr05	irgsp1_rep	CDS	28038201	28038210	.	+	0	Parent=Os05t0563400-02
Chr05	irgsp1_rep	CDS	28038294	28039159	.	+	2	Parent=Os05t0563400-02
Chr05	irgsp1_rep	CDS	28039232	28039297	.	+	0	Parent=Os05t0563400-02
Chr05	irgsp1_rep	three_prime_UTR	28039298	28039362	.	+	.	Parent=Os05t0563400-02
Chr05	irgsp1_rep	three_prime_UTR	28039449	28039748	.	+	.	Parent=Os05t0563400-02
Chr05	irgsp1_rep	mRNA	28040221	28042695	.	-	.	ID=Os05t0563500-01;Name=Os05t0563500-01;Locus_id=Os05g0563500;CGSNL Gene Symbol=HPY2;CGSNL Gene Name=HIGH PLOIDY 2;Oryzabase Gene Symbol Synonym(s)=OsHPY2%2C OsHPY2.1%2C OsHPY2.2;Oryzabase Gene Name Synonym(s)=HIGH PLOIDY2;Note=Conserved hypothetical protein.;Transcript_evidence=AK121924 (DDBJ%2C Best hit);ORF_evidence=B9FLM1 (UniProt);NIAS_FLcDNA=J033106F17;Oryzabase=22917;Expression=AK121924;TENOR=Os05t0563500-01;KEGG=Os05t0563500-01
Chr05	irgsp1_rep	five_prime_UTR	28042605	28042695	.	-	.	Parent=Os05t0563500-01
Chr05	irgsp1_rep	CDS	28042533	28042604	.	-	0	Parent=Os05t0563500-01
Chr05	irgsp1_rep	CDS	28042375	28042447	.	-	0	Parent=Os05t0563500-01
Chr05	irgsp1_rep	CDS	28042045	28042283	.	-	2	Parent=Os05t0563500-01
Chr05	irgsp1_rep	three_prime_UTR	28041938	28042044	.	-	.	Parent=Os05t0563500-01
Chr05	irgsp1_rep	three_prime_UTR	28040687	28041614	.	-	.	Parent=Os05t0563500-01
Chr05	irgsp1_rep	three_prime_UTR	28040221	28040611	.	-	.	Parent=Os05t0563500-01
Chr05	irgsp1_rep	mRNA	28047385	28048140	.	+	.	ID=Os05t0563550-00;Name=Os05t0563550-00;Locus_id=Os05g0563550;CGSNL Gene Symbol=FLA18;CGSNL Gene Name=FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 18;Oryzabase Gene Symbol Synonym(s)=OsFLA18;Oryzabase Gene Name Synonym(s)=fasciclin-like AGP 18%2C fasciclin-like arabinogalactan protein 18;Note=FAS1 domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q06I94 (UniProt);InterPro=FAS1 domain (IPR000782),Twin-arginine translocation pathway%2C signal sequence (IPR006311);Oryzabase=11353;TENOR=Os05t0563550-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	28047385	28048140	.	+	0	Parent=Os05t0563550-00
Chr05	irgsp1_rep	mRNA	28051758	28052859	.	+	.	ID=Os05t0563600-01;Name=Os05t0563600-01;Locus_id=Os05g0563600;CGSNL Gene Symbol=FLA6;CGSNL Gene Name=FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsFLA6;Oryzabase Gene Name Synonym(s)=fasciclin-like AGP 6%2C fasciclin-like arabinogalactan protein 6;Note=FAS1 domain domain containing protein.;Transcript_evidence=AK058836 (DDBJ%2C Best hit),AK099313 (DDBJ%2C Best hit);ORF_evidence=Q06I91 (UniProt);InterPro=FAS1 domain (IPR000782);NIAS_FLcDNA=001-004-C09,J023144L21;Oryzabase=11341;Expression=AK058836;TENOR=Os05t0563600-01;KEGG=Os05t0563600-01
Chr05	irgsp1_rep	five_prime_UTR	28051758	28051824	.	+	.	Parent=Os05t0563600-01
Chr05	irgsp1_rep	CDS	28051825	28052643	.	+	0	Parent=Os05t0563600-01
Chr05	irgsp1_rep	three_prime_UTR	28052644	28052859	.	+	.	Parent=Os05t0563600-01
Chr05	irgsp1_rep	mRNA	28067828	28068569	.	+	.	ID=Os05t0563900-01;Name=Os05t0563900-01;Locus_id=Os05g0563900;CGSNL Gene Symbol=GRX17;CGSNL Gene Name=GLUTAREDOXIN 17;Oryzabase Gene Symbol Synonym(s)=OsGRX17;Oryzabase Gene Name Synonym(s)=glutaredoxin 17;Note=Hypothetical gene.;Transcript_evidence=AK062897 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-108-E10;Oryzabase=13572;Expression=AK062897;TENOR=Os05t0563900-01;KEGG=Os05t0563900-01
Chr05	irgsp1_rep	CDS	28067828	28067888	.	+	0	Parent=Os05t0563900-01
Chr05	irgsp1_rep	CDS	28068232	28068389	.	+	2	Parent=Os05t0563900-01
Chr05	irgsp1_rep	three_prime_UTR	28068390	28068569	.	+	.	Parent=Os05t0563900-01
Chr05	irgsp1_rep	mRNA	28068329	28069297	.	-	.	ID=Os05t0563950-01;Name=Os05t0563950-01;Locus_id=Os05g0563950;Note=Conserved hypothetical protein.;Transcript_evidence=AK240693 (DDBJ%2C Best hit);ORF_evidence=NP_001174525.1 (RefSeq);NIAS_FLcDNA=J043007B14;TENOR=Os05t0563950-01;KEGG=Os05t0563950-01
Chr05	irgsp1_rep	five_prime_UTR	28068700	28069297	.	-	.	Parent=Os05t0563950-01
Chr05	irgsp1_rep	CDS	28068361	28068699	.	-	0	Parent=Os05t0563950-01
Chr05	irgsp1_rep	three_prime_UTR	28068329	28068360	.	-	.	Parent=Os05t0563950-01
Chr05	irgsp1_rep	mRNA	28073023	28076506	.	-	.	ID=Os05t0564000-00;Name=Os05t0564000-00;Locus_id=Os05g0564000;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0016e07 (Wheat FLcDNA);ORF_evidence=B9FLM3 (UniProt);TENOR=Os05t0564000-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	28076483	28076506	.	-	.	Parent=Os05t0564000-00
Chr05	irgsp1_rep	CDS	28076149	28076482	.	-	0	Parent=Os05t0564000-00
Chr05	irgsp1_rep	CDS	28075583	28075692	.	-	2	Parent=Os05t0564000-00
Chr05	irgsp1_rep	CDS	28074989	28075183	.	-	0	Parent=Os05t0564000-00
Chr05	irgsp1_rep	three_prime_UTR	28074974	28074988	.	-	.	Parent=Os05t0564000-00
Chr05	irgsp1_rep	three_prime_UTR	28073023	28073851	.	-	.	Parent=Os05t0564000-00
Chr05	irgsp1_rep	mRNA	28077381	28078527	.	+	.	ID=Os05t0564100-01;Name=Os05t0564100-01;Locus_id=Os05g0564100;Note=Nicotinamide N-methyltransferase%2C putative domain containing protein.;Transcript_evidence=AK111480 (DDBJ%2C Best hit);ORF_evidence=A2Y7H2 (UniProt);InterPro=Nicotinamide N-methyltransferase%2C putative (IPR019410);NIAS_FLcDNA=002-188-A05;Expression=AK111480;TENOR=Os05t0564100-01;KEGG=Os05t0564100-01
Chr05	irgsp1_rep	five_prime_UTR	28077381	28077434	.	+	.	Parent=Os05t0564100-01
Chr05	irgsp1_rep	CDS	28077435	28078109	.	+	0	Parent=Os05t0564100-01
Chr05	irgsp1_rep	three_prime_UTR	28078110	28078155	.	+	.	Parent=Os05t0564100-01
Chr05	irgsp1_rep	three_prime_UTR	28078248	28078527	.	+	.	Parent=Os05t0564100-01
Chr05	irgsp1_rep	mRNA	28080214	28082860	.	+	.	ID=Os05t0564200-01;Name=Os05t0564200-01;Locus_id=Os05g0564200;CGSNL Gene Symbol=C3H38;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 38;Oryzabase Gene Symbol Synonym(s)=OsC3H38%2C U2AF35B%2C OsU2AF35b;Oryzabase Gene Name Synonym(s)=Splicing factor U2af small subunit B%2C U2 small nuclear ribonucleoprotein auxiliary factor small subunit B%2C U2 snRNP auxiliary factor small subunit B%2C U2 auxiliary factor 35 kDa subunit B%2C Zinc finger CCCH domain-containing protein 38%2C U2 snRNP auxiliary factor small subunit B%2C U2 auxiliary factor 35 kDa subunit B%2C U2 Small Nuclear Ribonucleoprotein Auxiliary Factor U2AF Subunit 35b;Note=U2 snRNP auxiliary factor%2C small subunit.;Transcript_evidence=AK070198 (DDBJ%2C Best hit),AK104767 (DDBJ%2C Best hit);ORF_evidence=Q6AUG0 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA recognition motif domain (IPR000504),Zinc finger%2C CCCH-type (IPR000571),U2 auxiliary factor small subunit (IPR009145),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023041B11,001-039-A01;Oryzabase=8603;TENOR=Os05t0564200-01
Chr05	irgsp1_rep	five_prime_UTR	28080214	28080267	.	+	.	Parent=Os05t0564200-01
Chr05	irgsp1_rep	five_prime_UTR	28080376	28080431	.	+	.	Parent=Os05t0564200-01
Chr05	irgsp1_rep	five_prime_UTR	28081663	28081693	.	+	.	Parent=Os05t0564200-01
Chr05	irgsp1_rep	CDS	28081694	28082608	.	+	0	Parent=Os05t0564200-01
Chr05	irgsp1_rep	three_prime_UTR	28082609	28082860	.	+	.	Parent=Os05t0564200-01
Chr05	irgsp1_rep	mRNA	28085122	28092378	.	+	.	ID=Os05t0564300-01;Name=Os05t0564300-01;Locus_id=Os05g0564300;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK065766 (DDBJ%2C Best hit);ORF_evidence=NP_001148112.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J013041K19;Expression=AK065766;TENOR=Os05t0564300-01;KEGG=Os05t0564300-01
Chr05	irgsp1_rep	five_prime_UTR	28085122	28085232	.	+	.	Parent=Os05t0564300-01
Chr05	irgsp1_rep	five_prime_UTR	28089302	28089368	.	+	.	Parent=Os05t0564300-01
Chr05	irgsp1_rep	CDS	28089369	28090131	.	+	0	Parent=Os05t0564300-01
Chr05	irgsp1_rep	CDS	28090314	28090654	.	+	2	Parent=Os05t0564300-01
Chr05	irgsp1_rep	CDS	28091304	28091399	.	+	0	Parent=Os05t0564300-01
Chr05	irgsp1_rep	CDS	28091478	28091633	.	+	0	Parent=Os05t0564300-01
Chr05	irgsp1_rep	CDS	28091901	28092047	.	+	0	Parent=Os05t0564300-01
Chr05	irgsp1_rep	three_prime_UTR	28092048	28092378	.	+	.	Parent=Os05t0564300-01
Chr05	irgsp1_rep	mRNA	28089312	28092327	.	-	.	ID=Os05t0564350-00;Name=Os05t0564350-00;Locus_id=Os05g0564350;Note=Hypothetical protein.;Transcript_evidence=tplb0029e12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0564350-00
Chr05	irgsp1_rep	five_prime_UTR	28092075	28092327	.	-	.	Parent=Os05t0564350-00
Chr05	irgsp1_rep	CDS	28091899	28092074	.	-	0	Parent=Os05t0564350-00
Chr05	irgsp1_rep	CDS	28091556	28091631	.	-	1	Parent=Os05t0564350-00
Chr05	irgsp1_rep	three_prime_UTR	28091476	28091555	.	-	.	Parent=Os05t0564350-00
Chr05	irgsp1_rep	three_prime_UTR	28091272	28091391	.	-	.	Parent=Os05t0564350-00
Chr05	irgsp1_rep	three_prime_UTR	28090300	28090740	.	-	.	Parent=Os05t0564350-00
Chr05	irgsp1_rep	three_prime_UTR	28089312	28090119	.	-	.	Parent=Os05t0564350-00
Chr05	irgsp1_rep	mRNA	28092844	28094569	.	-	.	ID=Os05t0564400-02;Name=Os05t0564400-02;Locus_id=Os05g0564400;Oryzabase Gene Symbol Synonym(s)=OsRab11C3;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab11C3;Note=Similar to GTP-binding protein.;Transcript_evidence=AK073075 (DDBJ%2C Best hit),AK109344 (DDBJ%2C Best hit);ORF_evidence=NP_001151123.1 (RefSeq);NIAS_FLcDNA=J033007H18,006-203-A06;Oryzabase=11101;Expression=AK073075;TENOR=Os05t0564400-02;KEGG=Os05t0564400-02
Chr05	irgsp1_rep	five_prime_UTR	28094386	28094569	.	-	.	Parent=Os05t0564400-02
Chr05	irgsp1_rep	CDS	28094168	28094385	.	-	0	Parent=Os05t0564400-02
Chr05	irgsp1_rep	CDS	28093129	28093564	.	-	1	Parent=Os05t0564400-02
Chr05	irgsp1_rep	three_prime_UTR	28092844	28093128	.	-	.	Parent=Os05t0564400-02
Chr05	irgsp1_rep	mRNA	28093214	28094390	.	+	.	ID=Os05t0564450-00;Name=Os05t0564450-00;Locus_id=Os05g0564450;Note=Hypothetical gene.;Transcript_evidence=BT084300 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0564450-00;KEGG=Os05t0564450-00
Chr05	irgsp1_rep	five_prime_UTR	28093214	28093541	.	+	.	Parent=Os05t0564450-00
Chr05	irgsp1_rep	CDS	28093542	28093549	.	+	0	Parent=Os05t0564450-00
Chr05	irgsp1_rep	CDS	28094146	28094356	.	+	1	Parent=Os05t0564450-00
Chr05	irgsp1_rep	three_prime_UTR	28094357	28094390	.	+	.	Parent=Os05t0564450-00
Chr05	irgsp1_rep	mRNA	28100295	28105340	.	+	.	ID=Os05t0564500-01;Name=Os05t0564500-01;Locus_id=Os05g0564500;RAP-DB Gene Symbol Synonym(s)=DWL2;RAP-DB Gene Name Synonym(s)=DWT-LIKE 2;CGSNL Gene Symbol=WOX9C;CGSNL Gene Name=WUSCHEL-LIKE HOMEOBOX 9C;Oryzabase Gene Symbol Synonym(s)=OsWOX9C%2C DWL2%2C OsDWL2%2C DWL2/WOX9C;Oryzabase Gene Name Synonym(s)=WUSCHEL-related homeobox 9C%2C DWT-LIKE 2;Note=WUSCHEL-related homeobox transcription factor (WOX9) homolog%2C Regulation of the uniform growth of shoots;Transcript_evidence=AM234753 (truncated),Inferred from literature;ORF_evidence=A3B6V0;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeobox-like domain superfamily (IPR009057),Homeobox domain (IPR001356);Manual Curation=October 8%2C 2019;Literature_PMID=31550392,24625559;Oryzabase=14195;TENOR=Os05t0564500-00;KEGG=Os05t0564500-00
Chr05	irgsp1_rep	CDS	28100295	28100469	.	+	0	Parent=Os05t0564500-01
Chr05	irgsp1_rep	CDS	28100558	28101649	.	+	2	Parent=Os05t0564500-01
Chr05	irgsp1_rep	CDS	28104479	28104735	.	+	2	Parent=Os05t0564500-01
Chr05	irgsp1_rep	CDS	28105033	28105056	.	+	0	Parent=Os05t0564500-01
Chr05	irgsp1_rep	three_prime_UTR	28105057	28105340	.	+	.	Parent=Os05t0564500-01
Chr05	irgsp1_rep	mRNA	28107309	28107839	.	-	.	ID=Os05t0564601-00;Name=Os05t0564601-00;Locus_id=Os05g0564601;Note=Similar to predicted protein.;Transcript_evidence=BT061896 (DDBJ);ORF_evidence=E6NU40 (UniProt);TENOR=Os05t0564601-00;KEGG=Os05t0564601-00
Chr05	irgsp1_rep	CDS	28107309	28107839	.	-	0	Parent=Os05t0564601-00
Chr05	irgsp1_rep	mRNA	28109440	28110288	.	-	.	ID=Os05t0564700-00;Name=Os05t0564700-00;Locus_id=Os05g0564700;CGSNL Gene Symbol=ERF84;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 84;Oryzabase Gene Symbol Synonym(s)=OsERF#084%2C OsERF084%2C OsERF84%2C OsDERF10%2C DERF10%2C AP2/EREBP#097%2C AP2/EREBP97;Oryzabase Gene Name Synonym(s)=drought-responsive ethylene response factor 10%2C drought-responsive ERF 10%2C ethylene response factor 84%2C APETALA2/ethylene-responsive element binding protein 97;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FI52 (UniProt);Oryzabase=9696;TENOR=Os05t0564700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	28109994	28110288	.	-	0	Parent=Os05t0564700-00
Chr05	irgsp1_rep	CDS	28109440	28109618	.	-	2	Parent=Os05t0564700-00
Chr05	irgsp1_rep	mRNA	28112936	28114907	.	+	.	ID=Os05t0564800-01;Name=Os05t0564800-01;Locus_id=Os05g0564800;Note=Similar to 60S ribosomal protein L18A.;Transcript_evidence=AK120640 (DDBJ%2C Best hit);ORF_evidence=NP_001148379.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L18a (IPR021138);NIAS_FLcDNA=J013154C21;Expression=AK120640;TENOR=Os05t0564800-01;KEGG=Os05t0564800-01
Chr05	irgsp1_rep	five_prime_UTR	28112936	28112936	.	+	.	Parent=Os05t0564800-01
Chr05	irgsp1_rep	CDS	28112937	28113063	.	+	0	Parent=Os05t0564800-01
Chr05	irgsp1_rep	CDS	28113852	28113930	.	+	2	Parent=Os05t0564800-01
Chr05	irgsp1_rep	CDS	28114015	28114132	.	+	1	Parent=Os05t0564800-01
Chr05	irgsp1_rep	CDS	28114632	28114691	.	+	0	Parent=Os05t0564800-01
Chr05	irgsp1_rep	three_prime_UTR	28114692	28114907	.	+	.	Parent=Os05t0564800-01
Chr05	irgsp1_rep	mRNA	28118290	28120481	.	+	.	ID=Os05t0565000-01;Name=Os05t0565000-01;Locus_id=Os05g0565000;CGSNL Gene Symbol=RPL18A;CGSNL Gene Name=RIBOSOMAL PROTEIN L18A;Oryzabase Gene Symbol Synonym(s)=rpl18a%2C RPL18a%2C OsRPL18a;Oryzabase Gene Name Synonym(s)=ribosomal protein L18a;Note=Similar to 60S ribosomal protein L18a-1.;Transcript_evidence=AK102673 (DDBJ%2C Best hit);ORF_evidence=B4FU90 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L18a (IPR021138),Ribosomal protein L18a/LX (IPR023573);NIAS_FLcDNA=J033102C12;Oryzabase=16011;Expression=AK102673;TENOR=Os05t0565000-01;KEGG=Os05t0565000-01
Chr05	irgsp1_rep	five_prime_UTR	28118290	28118353	.	+	.	Parent=Os05t0565000-01
Chr05	irgsp1_rep	CDS	28118354	28118368	.	+	0	Parent=Os05t0565000-01
Chr05	irgsp1_rep	CDS	28118485	28118600	.	+	0	Parent=Os05t0565000-01
Chr05	irgsp1_rep	CDS	28118687	28118750	.	+	1	Parent=Os05t0565000-01
Chr05	irgsp1_rep	CDS	28119776	28120117	.	+	0	Parent=Os05t0565000-01
Chr05	irgsp1_rep	three_prime_UTR	28120118	28120481	.	+	.	Parent=Os05t0565000-01
Chr05	irgsp1_rep	mRNA	28118484	28120198	.	-	.	ID=Os05t0565050-00;Name=Os05t0565050-00;Locus_id=Os05g0565050;Note=Hypothetical conserved gene.;Transcript_evidence=BT016634 (DDBJ);ORF_evidence=C4J224 (UniProt);TENOR=Os05t0565050-00;KEGG=Os05t0565050-00
Chr05	irgsp1_rep	CDS	28119752	28120198	.	-	0	Parent=Os05t0565050-00
Chr05	irgsp1_rep	three_prime_UTR	28119748	28119751	.	-	.	Parent=Os05t0565050-00
Chr05	irgsp1_rep	three_prime_UTR	28118484	28118639	.	-	.	Parent=Os05t0565050-00
Chr05	irgsp1_rep	mRNA	28123115	28124803	.	+	.	ID=Os05t0565100-01;Name=Os05t0565100-01;Locus_id=Os05g0565100;Note=CytoChrome b561/ferric reductase transmembrane domain containing protein.;Transcript_evidence=AK063277 (DDBJ%2C Best hit);ORF_evidence=B8AWR7 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=CytoChrome b561%2C eukaryote (IPR004877),CytoChrome b561/ferric reductase transmembrane (IPR006593);NIAS_FLcDNA=001-113-C06;Expression=AK063277;TENOR=Os05t0565100-01;KEGG=Os05t0565100-01
Chr05	irgsp1_rep	five_prime_UTR	28123115	28123561	.	+	.	Parent=Os05t0565100-01
Chr05	irgsp1_rep	CDS	28123562	28123702	.	+	0	Parent=Os05t0565100-01
Chr05	irgsp1_rep	CDS	28123824	28123985	.	+	0	Parent=Os05t0565100-01
Chr05	irgsp1_rep	CDS	28124081	28124229	.	+	0	Parent=Os05t0565100-01
Chr05	irgsp1_rep	CDS	28124325	28124655	.	+	1	Parent=Os05t0565100-01
Chr05	irgsp1_rep	three_prime_UTR	28124656	28124803	.	+	.	Parent=Os05t0565100-01
Chr05	irgsp1_rep	mRNA	28125241	28128053	.	+	.	ID=Os05t0565200-01;Name=Os05t0565200-01;Locus_id=Os05g0565200;Oryzabase Gene Symbol Synonym(s)=UreG%2C OsUreG;Oryzabase Gene Name Synonym(s)=urease accessory protein UreG;Note=Similar to Urease accessory protein G.;Transcript_evidence=AK067090 (DDBJ%2C Best hit),AK104200 (DDBJ%2C Best hit),AK104368 (DDBJ%2C Best hit);ORF_evidence=E0ZS47 (UniProt);GO=Cellular Component: cytoplasm (GO:0005737),Molecular Function: ATP binding (GO:0005524),Molecular Function: nickel ion binding (GO:0016151);InterPro=Cobalamin (vitamin B12) biosynthesis CobW-like (IPR003495),Urease accessory protein UreG (IPR004400),[NiFe]-hydrogenase/urease maturation factor%2C Ni2-binding GTPase (IPR012202);NIAS_FLcDNA=J013095M05,006-304-B01,001-035-E04;Oryzabase=11822;TENOR=Os05t0565200-01
Chr05	irgsp1_rep	five_prime_UTR	28125241	28125276	.	+	.	Parent=Os05t0565200-01
Chr05	irgsp1_rep	CDS	28125277	28125356	.	+	0	Parent=Os05t0565200-01
Chr05	irgsp1_rep	CDS	28125449	28125649	.	+	1	Parent=Os05t0565200-01
Chr05	irgsp1_rep	CDS	28126421	28126481	.	+	1	Parent=Os05t0565200-01
Chr05	irgsp1_rep	CDS	28126843	28127044	.	+	0	Parent=Os05t0565200-01
Chr05	irgsp1_rep	CDS	28127225	28127346	.	+	2	Parent=Os05t0565200-01
Chr05	irgsp1_rep	CDS	28127469	28127573	.	+	0	Parent=Os05t0565200-01
Chr05	irgsp1_rep	CDS	28127695	28127778	.	+	0	Parent=Os05t0565200-01
Chr05	irgsp1_rep	three_prime_UTR	28127779	28128053	.	+	.	Parent=Os05t0565200-01
Chr05	irgsp1_rep	mRNA	28128521	28131181	.	-	.	ID=Os05t0565400-01;Name=Os05t0565400-01;Locus_id=Os05g0565400;Note=Protein of unknown function DUF561 family protein.;Transcript_evidence=AK068910 (DDBJ%2C Best hit),AK103931 (DDBJ%2C Best hit),AK104836 (DDBJ%2C Best hit);ORF_evidence=A2Y7I6 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Uncharacterised protein family Ycf23 (IPR007570),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J023002B08,001-013-E05,001-042-C08;TENOR=Os05t0565400-01
Chr05	irgsp1_rep	five_prime_UTR	28131113	28131181	.	-	.	Parent=Os05t0565400-01
Chr05	irgsp1_rep	CDS	28130933	28131112	.	-	0	Parent=Os05t0565400-01
Chr05	irgsp1_rep	CDS	28130663	28130728	.	-	0	Parent=Os05t0565400-01
Chr05	irgsp1_rep	CDS	28129930	28130004	.	-	0	Parent=Os05t0565400-01
Chr05	irgsp1_rep	CDS	28129780	28129842	.	-	0	Parent=Os05t0565400-01
Chr05	irgsp1_rep	CDS	28129630	28129689	.	-	0	Parent=Os05t0565400-01
Chr05	irgsp1_rep	CDS	28129435	28129524	.	-	0	Parent=Os05t0565400-01
Chr05	irgsp1_rep	CDS	28129241	28129348	.	-	0	Parent=Os05t0565400-01
Chr05	irgsp1_rep	CDS	28129031	28129153	.	-	0	Parent=Os05t0565400-01
Chr05	irgsp1_rep	CDS	28128753	28128881	.	-	0	Parent=Os05t0565400-01
Chr05	irgsp1_rep	three_prime_UTR	28128521	28128752	.	-	.	Parent=Os05t0565400-01
Chr05	irgsp1_rep	mRNA	28131797	28133188	.	-	.	ID=Os05t0565500-01;Name=Os05t0565500-01;Locus_id=Os05g0565500;Note=3-hydroxyacid dehydrogenase/reductase domain containing protein.;Transcript_evidence=AK243328 (DDBJ%2C Best hit);ORF_evidence=Q1EPJ1 (UniProt);GO=Biological Process: pentose-phosphate shunt (GO:0006098),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity (GO:0004616),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: coenzyme binding (GO:0050662);InterPro=6-phosphogluconate dehydrogenase%2C NADP-binding (IPR006115),6-phosphogluconate dehydrogenase%2C C-terminal-like (IPR008927),Dehydrogenase%2C multihelical (IPR013328),3-hydroxyacid dehydrogenase/reductase (IPR015815),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J100058A22;TENOR=Os05t0565500-01;KEGG=Os05t0565500-01
Chr05	irgsp1_rep	five_prime_UTR	28133185	28133188	.	-	.	Parent=Os05t0565500-01
Chr05	irgsp1_rep	CDS	28132246	28133184	.	-	0	Parent=Os05t0565500-01
Chr05	irgsp1_rep	three_prime_UTR	28131797	28132245	.	-	.	Parent=Os05t0565500-01
Chr05	irgsp1_rep	mRNA	28133353	28134042	.	-	.	ID=Os05t0565701-00;Name=Os05t0565701-00;Locus_id=Os05g0565701;Note=Conserved hypothetical protein.;Transcript_evidence=CT836398 (DDBJ%2C Best hit);ORF_evidence=NP_001174528.1 (RefSeq);TENOR=Os05t0565701-00;KEGG=Os05t0565701-00
Chr05	irgsp1_rep	five_prime_UTR	28133926	28134042	.	-	.	Parent=Os05t0565701-00
Chr05	irgsp1_rep	CDS	28133527	28133925	.	-	0	Parent=Os05t0565701-00
Chr05	irgsp1_rep	three_prime_UTR	28133353	28133526	.	-	.	Parent=Os05t0565701-00
Chr05	irgsp1_rep	mRNA	28154693	28157931	.	+	.	ID=Os05t0565900-00;Name=Os05t0565900-00;Locus_id=Os05g0565900;CGSNL Gene Symbol=WRKY49;CGSNL Gene Name=WRKY GENE 49;Oryzabase Gene Symbol Synonym(s)=OsWRKY49;Oryzabase Gene Name Synonym(s)=Rice WRKY gene49;Note=DNA-binding WRKY domain containing protein.;Transcript_evidence=FP101665 (DDBJ);ORF_evidence=Q688X5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6563;TENOR=Os05t0565900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	28154693	28155210	.	+	0	Parent=Os05t0565900-00
Chr05	irgsp1_rep	CDS	28156500	28156643	.	+	1	Parent=Os05t0565900-00
Chr05	irgsp1_rep	CDS	28157020	28157617	.	+	1	Parent=Os05t0565900-00
Chr05	irgsp1_rep	three_prime_UTR	28157618	28157694	.	+	.	Parent=Os05t0565900-00
Chr05	irgsp1_rep	three_prime_UTR	28157781	28157931	.	+	.	Parent=Os05t0565900-00
Chr05	irgsp1_rep	mRNA	28176577	28181817	.	+	.	ID=Os05t0566200-01;Name=Os05t0566200-01;Locus_id=Os05g0566200;Note=NLI interacting factor domain containing protein.;Transcript_evidence=AK099836 (DDBJ%2C Best hit);ORF_evidence=B9FLM9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=NLI interacting factor (IPR004274),HAD-like domain (IPR023214);NIAS_FLcDNA=J013106J19;TENOR=Os05t0566200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	28176577	28176578	.	+	.	Parent=Os05t0566200-01
Chr05	irgsp1_rep	CDS	28176579	28176682	.	+	0	Parent=Os05t0566200-01
Chr05	irgsp1_rep	CDS	28177952	28178187	.	+	1	Parent=Os05t0566200-01
Chr05	irgsp1_rep	CDS	28178289	28178380	.	+	2	Parent=Os05t0566200-01
Chr05	irgsp1_rep	CDS	28179664	28179745	.	+	0	Parent=Os05t0566200-01
Chr05	irgsp1_rep	CDS	28180364	28180780	.	+	2	Parent=Os05t0566200-01
Chr05	irgsp1_rep	CDS	28180865	28181010	.	+	2	Parent=Os05t0566200-01
Chr05	irgsp1_rep	CDS	28181126	28181149	.	+	0	Parent=Os05t0566200-01
Chr05	irgsp1_rep	three_prime_UTR	28181150	28181202	.	+	.	Parent=Os05t0566200-01
Chr05	irgsp1_rep	three_prime_UTR	28181392	28181817	.	+	.	Parent=Os05t0566200-01
Chr05	irgsp1_rep	mRNA	28183127	28188674	.	+	.	ID=Os05t0566300-01;Name=Os05t0566300-01;Locus_id=Os05g0566300;Note=PRC-barrel domain containing protein.;Transcript_evidence=AK099641 (DDBJ%2C Best hit);ORF_evidence=B9FI59 (UniProt);GO=Biological Process: rRNA processing (GO:0006364),Cellular Component: ribosome (GO:0005840),Molecular Function: ribosome binding (GO:0043022);InterPro=RimM protein (IPR002676),PRC-barrel (IPR007903),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),PRC-barrel-like (IPR011033),16S rRNA processing protein RimM (IPR011961);NIAS_FLcDNA=J013060F08;Expression=AK099641;TENOR=Os05t0566300-01;KEGG=Os05t0566300-01
Chr05	irgsp1_rep	five_prime_UTR	28183127	28183189	.	+	.	Parent=Os05t0566300-01
Chr05	irgsp1_rep	CDS	28183190	28183510	.	+	0	Parent=Os05t0566300-01
Chr05	irgsp1_rep	CDS	28183623	28183757	.	+	0	Parent=Os05t0566300-01
Chr05	irgsp1_rep	CDS	28184285	28184395	.	+	0	Parent=Os05t0566300-01
Chr05	irgsp1_rep	CDS	28184948	28185295	.	+	0	Parent=Os05t0566300-01
Chr05	irgsp1_rep	three_prime_UTR	28185296	28186152	.	+	.	Parent=Os05t0566300-01
Chr05	irgsp1_rep	three_prime_UTR	28186715	28187497	.	+	.	Parent=Os05t0566300-01
Chr05	irgsp1_rep	three_prime_UTR	28188084	28188674	.	+	.	Parent=Os05t0566300-01
Chr05	irgsp1_rep	mRNA	28188894	28194022	.	-	.	ID=Os05t0566400-01;Name=Os05t0566400-01;Locus_id=Os05g0566400;RAP-DB Gene Symbol Synonym(s)=OsMAPK20-5;RAP-DB Gene Name Synonym(s)=mitogen-activated protein kinase 20-5;CGSNL Gene Symbol=MPK7;CGSNL Gene Name=MITOGEN-ACTIVATED PROTEIN KINASE 7;Oryzabase Gene Symbol Synonym(s)=OsMPK7%2C OsMAPK44%2C MAPK44%2C OsMAPK20-5%2C MAPK20-5;Oryzabase Gene Name Synonym(s)=mitogen-activated protein kinase 7;Note=Group D mitogen-activated protein kinase (MAPK)%2C Defense responses to BPH%2C Control of excessive defense responses%2C Protection from defense-response-related autotoxicity;Transcript_evidence=AK099472,AK061645,AK100389;ORF_evidence=Q0DFW7;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: MAP kinase activity (GO:0004707),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),Protein kinase domain (IPR000719),Protein kinase%2C ATP binding site (IPR017441),Mitogen-activated protein (MAP) kinase%2C conserved site (IPR003527);NIAS_FLcDNA=J013024B05,001-036-B07,J023085N24;Manual Curation=April 8%2C 2019;Literature_PMID=30602493;Oryzabase=10238;Expression=AK099472;TENOR=Os05t0566400-01;KEGG=Os05t0566400-01
Chr05	irgsp1_rep	five_prime_UTR	28193897	28194022	.	-	.	Parent=Os05t0566400-01
Chr05	irgsp1_rep	CDS	28193840	28193896	.	-	0	Parent=Os05t0566400-01
Chr05	irgsp1_rep	CDS	28192334	28192742	.	-	0	Parent=Os05t0566400-01
Chr05	irgsp1_rep	CDS	28191695	28191822	.	-	2	Parent=Os05t0566400-01
Chr05	irgsp1_rep	CDS	28191521	28191580	.	-	0	Parent=Os05t0566400-01
Chr05	irgsp1_rep	CDS	28190930	28191079	.	-	0	Parent=Os05t0566400-01
Chr05	irgsp1_rep	CDS	28190677	28190834	.	-	0	Parent=Os05t0566400-01
Chr05	irgsp1_rep	CDS	28190338	28190547	.	-	1	Parent=Os05t0566400-01
Chr05	irgsp1_rep	CDS	28190167	28190259	.	-	1	Parent=Os05t0566400-01
Chr05	irgsp1_rep	CDS	28189884	28189966	.	-	1	Parent=Os05t0566400-01
Chr05	irgsp1_rep	CDS	28189352	28189782	.	-	2	Parent=Os05t0566400-01
Chr05	irgsp1_rep	three_prime_UTR	28188894	28189351	.	-	.	Parent=Os05t0566400-01
Chr05	irgsp1_rep	mRNA	28190338	28192738	.	+	.	ID=Os05t0566450-00;Name=Os05t0566450-00;Locus_id=Os05g0566450;Note=Non-protein coding transcript.;Transcript_evidence=tplb0038e20 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os05t0566450-00
Chr05	irgsp1_rep	exon	28190338	28190545	.	+	.	Parent=Os05t0566450-00
Chr05	irgsp1_rep	exon	28190675	28190842	.	+	.	Parent=Os05t0566450-00
Chr05	irgsp1_rep	exon	28190941	28191059	.	+	.	Parent=Os05t0566450-00
Chr05	irgsp1_rep	exon	28191501	28191590	.	+	.	Parent=Os05t0566450-00
Chr05	irgsp1_rep	exon	28191702	28191822	.	+	.	Parent=Os05t0566450-00
Chr05	irgsp1_rep	exon	28192334	28192738	.	+	.	Parent=Os05t0566450-00
Chr05	irgsp1_rep	mRNA	28202227	28204227	.	-	.	ID=Os05t0566500-01;Name=Os05t0566500-01;Locus_id=Os05g0566500;CGSNL Gene Symbol=EIF3D;CGSNL Gene Name=EUKARYOTIC INITIATION FACTOR 3D;Oryzabase Gene Symbol Synonym(s)=eIF-3d%2C OseIF3d;Oryzabase Gene Name Synonym(s)="eukaryotic translation initiation factor 3%2C subunit d"%2C Eukaryotic translation initiation factor 3 subunit d;Note=Similar to Initiation factor 3d (Fragment).;Transcript_evidence=AK073468 (DDBJ%2C Best hit);ORF_evidence=B6U4Q2 (UniProt);GO=Biological Process: translational initiation (GO:0006413),Molecular Function: translation initiation factor activity (GO:0003743);InterPro=Eukaryotic translation initiation factor 3%2C subunit 7 (IPR007783);NIAS_FLcDNA=J033046G07;Oryzabase=21026;Expression=AK073468;TENOR=Os05t0566500-01;KEGG=Os05t0566500-01
Chr05	irgsp1_rep	five_prime_UTR	28204121	28204227	.	-	.	Parent=Os05t0566500-01
Chr05	irgsp1_rep	CDS	28202363	28204120	.	-	0	Parent=Os05t0566500-01
Chr05	irgsp1_rep	three_prime_UTR	28202227	28202362	.	-	.	Parent=Os05t0566500-01
Chr05	irgsp1_rep	mRNA	28202128	28204199	.	-	.	ID=Os05t0566500-02;Name=Os05t0566500-02;Locus_id=Os05g0566500;CGSNL Gene Symbol=EIF3D;CGSNL Gene Name=EUKARYOTIC INITIATION FACTOR 3D;Oryzabase Gene Symbol Synonym(s)=eIF-3d%2C OseIF3d;Oryzabase Gene Name Synonym(s)="eukaryotic translation initiation factor 3%2C subunit d"%2C Eukaryotic translation initiation factor 3 subunit d;Note=Similar to Initiation factor 3d (Fragment).;Transcript_evidence=AK099052 (DDBJ%2C Best hit),AK104093 (DDBJ%2C Best hit);ORF_evidence=B6U4Q2 (UniProt);GO=Biological Process: translational initiation (GO:0006413),Molecular Function: translation initiation factor activity (GO:0003743);InterPro=Eukaryotic translation initiation factor 3%2C subunit 7 (IPR007783);NIAS_FLcDNA=J013145A19,001-031-F02;Oryzabase=21026;Expression=AK099052;TENOR=Os05t0566500-02;KEGG=Os05t0566500-02
Chr05	irgsp1_rep	five_prime_UTR	28204121	28204199	.	-	.	Parent=Os05t0566500-02
Chr05	irgsp1_rep	CDS	28202363	28204120	.	-	0	Parent=Os05t0566500-02
Chr05	irgsp1_rep	three_prime_UTR	28202128	28202362	.	-	.	Parent=Os05t0566500-02
Chr05	irgsp1_rep	mRNA	28205482	28206970	.	-	.	ID=Os05t0566600-01;Name=Os05t0566600-01;Locus_id=Os05g0566600;Note=Similar to Negatively light-regulated protein.;Transcript_evidence=AK058475 (DDBJ%2C Best hit);ORF_evidence=B6SN23 (UniProt);InterPro=Endosulphine (IPR006760);NIAS_FLcDNA=001-016-C02;TENOR=Os05t0566600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	28206970	28206970	.	-	.	Parent=Os05t0566600-01
Chr05	irgsp1_rep	CDS	28206925	28206969	.	-	0	Parent=Os05t0566600-01
Chr05	irgsp1_rep	CDS	28206781	28206843	.	-	0	Parent=Os05t0566600-01
Chr05	irgsp1_rep	CDS	28206575	28206622	.	-	0	Parent=Os05t0566600-01
Chr05	irgsp1_rep	CDS	28206408	28206467	.	-	0	Parent=Os05t0566600-01
Chr05	irgsp1_rep	CDS	28206018	28206075	.	-	0	Parent=Os05t0566600-01
Chr05	irgsp1_rep	CDS	28205865	28205935	.	-	2	Parent=Os05t0566600-01
Chr05	irgsp1_rep	three_prime_UTR	28205482	28205864	.	-	.	Parent=Os05t0566600-01
Chr05	irgsp1_rep	mRNA	28210407	28212525	.	+	.	ID=Os05t0566700-01;Name=Os05t0566700-01;Locus_id=Os05g0566700;Note=Similar to Homeobox protein B-H1 (Homeobox BarH1 protein).;Transcript_evidence=AK121469 (DDBJ%2C Best hit);ORF_evidence=Q688W9 (UniProt);NIAS_FLcDNA=J023148D09;Expression=AK121469;TENOR=Os05t0566700-01;KEGG=Os05t0566700-01
Chr05	irgsp1_rep	five_prime_UTR	28210407	28210857	.	+	.	Parent=Os05t0566700-01
Chr05	irgsp1_rep	CDS	28210858	28211220	.	+	0	Parent=Os05t0566700-01
Chr05	irgsp1_rep	three_prime_UTR	28211221	28211610	.	+	.	Parent=Os05t0566700-01
Chr05	irgsp1_rep	three_prime_UTR	28211828	28212525	.	+	.	Parent=Os05t0566700-01
Chr05	irgsp1_rep	mRNA	28213968	28216045	.	-	.	ID=Os05t0566800-01;Name=Os05t0566800-01;Locus_id=Os05g0566800;Oryzabase Gene Symbol Synonym(s)=COR413-TM1%2C Oscor413-tm1;Oryzabase Gene Name Synonym(s)=Cold acclimation protein 413-TM1%2C COR413-thylakoid membrane group multispanning transmembrane protein 1%2C cold-regulated 413-thylakoid membrane group multispanning transmembrane protein 1;Note=Cold acclimation protein COR413-TM1.;Transcript_evidence=AK065748 (DDBJ%2C Best hit);ORF_evidence=Q84XU8 (UniProt);InterPro=Cold acclimation WCOR413 (IPR008892);NIAS_FLcDNA=J013039F24;Oryzabase=13611;Expression=AK065748;TENOR=Os05t0566800-01;KEGG=Os05t0566800-01
Chr05	irgsp1_rep	five_prime_UTR	28215950	28216045	.	-	.	Parent=Os05t0566800-01
Chr05	irgsp1_rep	CDS	28215825	28215949	.	-	0	Parent=Os05t0566800-01
Chr05	irgsp1_rep	CDS	28215601	28215747	.	-	1	Parent=Os05t0566800-01
Chr05	irgsp1_rep	CDS	28214959	28215054	.	-	1	Parent=Os05t0566800-01
Chr05	irgsp1_rep	CDS	28214755	28214819	.	-	1	Parent=Os05t0566800-01
Chr05	irgsp1_rep	CDS	28214561	28214630	.	-	2	Parent=Os05t0566800-01
Chr05	irgsp1_rep	CDS	28214123	28214288	.	-	1	Parent=Os05t0566800-01
Chr05	irgsp1_rep	three_prime_UTR	28213968	28214122	.	-	.	Parent=Os05t0566800-01
Chr05	irgsp1_rep	mRNA	28220147	28228800	.	+	.	ID=Os05t0566900-01;Name=Os05t0566900-01;Locus_id=Os05g0566900;Note=Similar to TA9 protein (Fragment).;Transcript_evidence=AK120605 (DDBJ%2C Best hit),AK066026 (DDBJ%2C Best hit);ORF_evidence=B8AWS4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=UBA-like (IPR009060),Protein of unknown function DUF1296 (IPR009719);NIAS_FLcDNA=J013150C07,J013044F07;TENOR=Os05t0566900-01
Chr05	irgsp1_rep	five_prime_UTR	28220147	28220363	.	+	.	Parent=Os05t0566900-01
Chr05	irgsp1_rep	CDS	28220364	28220559	.	+	0	Parent=Os05t0566900-01
Chr05	irgsp1_rep	CDS	28222543	28222586	.	+	2	Parent=Os05t0566900-01
Chr05	irgsp1_rep	CDS	28222834	28222948	.	+	0	Parent=Os05t0566900-01
Chr05	irgsp1_rep	CDS	28223039	28223114	.	+	2	Parent=Os05t0566900-01
Chr05	irgsp1_rep	CDS	28223560	28224191	.	+	1	Parent=Os05t0566900-01
Chr05	irgsp1_rep	CDS	28224802	28225087	.	+	2	Parent=Os05t0566900-01
Chr05	irgsp1_rep	CDS	28225174	28225444	.	+	1	Parent=Os05t0566900-01
Chr05	irgsp1_rep	CDS	28225804	28225959	.	+	0	Parent=Os05t0566900-01
Chr05	irgsp1_rep	CDS	28226197	28226694	.	+	0	Parent=Os05t0566900-01
Chr05	irgsp1_rep	CDS	28227135	28227419	.	+	0	Parent=Os05t0566900-01
Chr05	irgsp1_rep	three_prime_UTR	28227420	28228800	.	+	.	Parent=Os05t0566900-01
Chr05	irgsp1_rep	mRNA	28220150	28226668	.	+	.	ID=Os05t0566900-02;Name=Os05t0566900-02;Locus_id=Os05g0566900;Note=Hypothetical conserved gene.;Transcript_evidence=AK102711 (DDBJ%2C Best hit);ORF_evidence=B8AWS4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=UBA-like (IPR009060),Protein of unknown function DUF1296 (IPR009719);NIAS_FLcDNA=J033104N01;TENOR=Os05t0566900-02
Chr05	irgsp1_rep	five_prime_UTR	28220150	28220363	.	+	.	Parent=Os05t0566900-02
Chr05	irgsp1_rep	CDS	28220364	28220559	.	+	0	Parent=Os05t0566900-02
Chr05	irgsp1_rep	CDS	28222543	28222586	.	+	2	Parent=Os05t0566900-02
Chr05	irgsp1_rep	CDS	28222834	28222948	.	+	0	Parent=Os05t0566900-02
Chr05	irgsp1_rep	CDS	28223039	28223114	.	+	2	Parent=Os05t0566900-02
Chr05	irgsp1_rep	CDS	28223560	28224191	.	+	1	Parent=Os05t0566900-02
Chr05	irgsp1_rep	CDS	28224802	28225087	.	+	2	Parent=Os05t0566900-02
Chr05	irgsp1_rep	CDS	28225174	28225444	.	+	1	Parent=Os05t0566900-02
Chr05	irgsp1_rep	CDS	28225804	28225959	.	+	0	Parent=Os05t0566900-02
Chr05	irgsp1_rep	CDS	28226197	28226668	.	+	0	Parent=Os05t0566900-02
Chr05	irgsp1_rep	mRNA	28231900	28237289	.	+	.	ID=Os05t0567100-01;Name=Os05t0567100-01;Locus_id=Os05g0567100;Oryzabase Gene Symbol Synonym(s)=Oryzasin;Oryzabase Gene Name Synonym(s)=Oryzasin%2C Oryzasin 1;Note=Aspartic proteinase oryzasin 1 precursor (EC 3.4.23.-).;Transcript_evidence=AK098911 (DDBJ%2C Best hit),AK067742 (DDBJ%2C Best hit),AK098906 (DDBJ%2C Best hit),AK103421 (DDBJ%2C Best hit),AK104838 (DDBJ%2C Best hit);ORF_evidence=NP_001148782.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Biological Process: lipid metabolic process (GO:0006629),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Saposin-like type B%2C 1 (IPR007856),Saposin-like type B%2C 2 (IPR008138),Saposin B (IPR008139),Peptidase aspartic%2C catalytic (IPR009007),Saposin-like (IPR011001),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J013002H22,J013116C15,J013002D14,J033128K05,001-042-E12;Oryzabase=11564;TENOR=Os05t0567100-01
Chr05	irgsp1_rep	five_prime_UTR	28231900	28231955	.	+	.	Parent=Os05t0567100-01
Chr05	irgsp1_rep	five_prime_UTR	28232585	28232593	.	+	.	Parent=Os05t0567100-01
Chr05	irgsp1_rep	CDS	28232594	28232950	.	+	0	Parent=Os05t0567100-01
Chr05	irgsp1_rep	CDS	28233060	28233120	.	+	0	Parent=Os05t0567100-01
Chr05	irgsp1_rep	CDS	28234084	28234178	.	+	2	Parent=Os05t0567100-01
Chr05	irgsp1_rep	CDS	28234270	28234382	.	+	0	Parent=Os05t0567100-01
Chr05	irgsp1_rep	CDS	28234762	28234930	.	+	1	Parent=Os05t0567100-01
Chr05	irgsp1_rep	CDS	28235003	28235042	.	+	0	Parent=Os05t0567100-01
Chr05	irgsp1_rep	CDS	28235123	28235187	.	+	2	Parent=Os05t0567100-01
Chr05	irgsp1_rep	CDS	28235811	28235924	.	+	0	Parent=Os05t0567100-01
Chr05	irgsp1_rep	CDS	28236013	28236077	.	+	0	Parent=Os05t0567100-01
Chr05	irgsp1_rep	CDS	28236253	28236409	.	+	1	Parent=Os05t0567100-01
Chr05	irgsp1_rep	CDS	28236493	28236612	.	+	0	Parent=Os05t0567100-01
Chr05	irgsp1_rep	CDS	28236773	28236861	.	+	0	Parent=Os05t0567100-01
Chr05	irgsp1_rep	CDS	28236957	28237041	.	+	1	Parent=Os05t0567100-01
Chr05	irgsp1_rep	three_prime_UTR	28237042	28237289	.	+	.	Parent=Os05t0567100-01
Chr05	irgsp1_rep	mRNA	28231903	28237359	.	+	.	ID=Os05t0567100-02;Name=Os05t0567100-02;Locus_id=Os05g0567100;Oryzabase Gene Symbol Synonym(s)=Oryzasin;Oryzabase Gene Name Synonym(s)=Oryzasin%2C Oryzasin 1;Note=Aspartic proteinase oryzasin 1 precursor (EC 3.4.23.-).;Transcript_evidence=AK066453 (DDBJ%2C Best hit);ORF_evidence=NP_001148782.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Biological Process: lipid metabolic process (GO:0006629),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Saposin-like type B%2C 1 (IPR007856),Saposin-like type B%2C 2 (IPR008138),Saposin B (IPR008139),Peptidase aspartic%2C catalytic (IPR009007),Saposin-like (IPR011001),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J013059L24;Oryzabase=11564;Expression=AK066453;TENOR=Os05t0567100-02;KEGG=Os05t0567100-02 (EC:3.4.23.40)
Chr05	irgsp1_rep	five_prime_UTR	28231903	28232593	.	+	.	Parent=Os05t0567100-02
Chr05	irgsp1_rep	CDS	28232594	28232950	.	+	0	Parent=Os05t0567100-02
Chr05	irgsp1_rep	CDS	28233060	28233120	.	+	0	Parent=Os05t0567100-02
Chr05	irgsp1_rep	CDS	28234084	28234178	.	+	2	Parent=Os05t0567100-02
Chr05	irgsp1_rep	CDS	28234270	28234382	.	+	0	Parent=Os05t0567100-02
Chr05	irgsp1_rep	CDS	28234762	28234930	.	+	1	Parent=Os05t0567100-02
Chr05	irgsp1_rep	CDS	28235003	28235042	.	+	0	Parent=Os05t0567100-02
Chr05	irgsp1_rep	CDS	28235123	28235187	.	+	2	Parent=Os05t0567100-02
Chr05	irgsp1_rep	CDS	28235811	28235924	.	+	0	Parent=Os05t0567100-02
Chr05	irgsp1_rep	CDS	28236013	28236077	.	+	0	Parent=Os05t0567100-02
Chr05	irgsp1_rep	CDS	28236253	28236409	.	+	1	Parent=Os05t0567100-02
Chr05	irgsp1_rep	CDS	28236493	28236612	.	+	0	Parent=Os05t0567100-02
Chr05	irgsp1_rep	CDS	28236773	28236861	.	+	0	Parent=Os05t0567100-02
Chr05	irgsp1_rep	CDS	28236957	28237041	.	+	1	Parent=Os05t0567100-02
Chr05	irgsp1_rep	three_prime_UTR	28237042	28237359	.	+	.	Parent=Os05t0567100-02
Chr05	irgsp1_rep	mRNA	28234864	28237325	.	+	.	ID=Os05t0567100-03;Name=Os05t0567100-03;Locus_id=Os05g0567100;Oryzabase Gene Symbol Synonym(s)=Oryzasin;Oryzabase Gene Name Synonym(s)=Oryzasin%2C Oryzasin 1;Note=Similar to Phytepsin.;Transcript_evidence=AK100749 (DDBJ%2C Best hit);ORF_evidence=P42210 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: lipid metabolic process (GO:0006629),Biological Process: sphingolipid metabolic process (GO:0006665),Cellular Component: lysosome (GO:0005764),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Saposin-like type B%2C 1 (IPR007856),Saposin-like type B%2C 2 (IPR008138),Saposin B (IPR008139),Saposin (IPR008373),Peptidase aspartic%2C catalytic (IPR009007),Saposin-like (IPR011001),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J023118K01;Oryzabase=11564;Expression=AK100749;TENOR=Os05t0567100-03;KEGG=Os05t0567100-03 (EC:3.4.23.40)
Chr05	irgsp1_rep	five_prime_UTR	28234864	28234864	.	+	.	Parent=Os05t0567100-03
Chr05	irgsp1_rep	CDS	28234865	28234930	.	+	0	Parent=Os05t0567100-03
Chr05	irgsp1_rep	CDS	28235003	28235042	.	+	0	Parent=Os05t0567100-03
Chr05	irgsp1_rep	CDS	28235123	28235187	.	+	2	Parent=Os05t0567100-03
Chr05	irgsp1_rep	CDS	28235811	28235924	.	+	0	Parent=Os05t0567100-03
Chr05	irgsp1_rep	CDS	28236013	28236077	.	+	0	Parent=Os05t0567100-03
Chr05	irgsp1_rep	CDS	28236253	28236409	.	+	1	Parent=Os05t0567100-03
Chr05	irgsp1_rep	CDS	28236493	28236612	.	+	0	Parent=Os05t0567100-03
Chr05	irgsp1_rep	CDS	28236773	28236861	.	+	0	Parent=Os05t0567100-03
Chr05	irgsp1_rep	CDS	28236957	28237041	.	+	1	Parent=Os05t0567100-03
Chr05	irgsp1_rep	three_prime_UTR	28237042	28237325	.	+	.	Parent=Os05t0567100-03
Chr05	irgsp1_rep	mRNA	28238562	28241041	.	+	.	ID=Os05t0567200-00;Name=Os05t0567200-00;Locus_id=Os05g0567200;CGSNL Gene Symbol=WRKY43;CGSNL Gene Name=WRKY GENE 43;Oryzabase Gene Symbol Synonym(s)=OsWRKY43;Oryzabase Gene Name Synonym(s)=Rice WRKY gene43;Note=Similar to WRKY transcription factor 43.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6IEN8 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6557;TENOR=Os05t0567200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	28238562	28238906	.	+	0	Parent=Os05t0567200-00
Chr05	irgsp1_rep	CDS	28238996	28239103	.	+	0	Parent=Os05t0567200-00
Chr05	irgsp1_rep	CDS	28239310	28239474	.	+	0	Parent=Os05t0567200-00
Chr05	irgsp1_rep	CDS	28239595	28240062	.	+	0	Parent=Os05t0567200-00
Chr05	irgsp1_rep	CDS	28240364	28241041	.	+	0	Parent=Os05t0567200-00
Chr05	irgsp1_rep	mRNA	28242072	28244772	.	-	.	ID=Os05t0567300-01;Name=Os05t0567300-01;Locus_id=Os05g0567300;CGSNL Gene Symbol=WSL6;CGSNL Gene Name=WHITE STRIPE LEAF 6;Oryzabase Gene Symbol Synonym(s)=OsWSL6;Oryzabase Gene Name Synonym(s)=white stripe leaf6;Note=Similar to GTP-binding protein era.;Transcript_evidence=AK112068 (DDBJ%2C Best hit);ORF_evidence=B4FIL9 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: RNA binding (GO:0003723),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Protein synthesis factor%2C GTP-binding (IPR000795),K Homology%2C type 2 (IPR004044),GTP-binding protein Era (IPR005662),K Homology%2C prokaryotic type (IPR009019),K homology domain-like%2C alpha/beta (IPR015946);NIAS_FLcDNA=001-117-H08;Oryzabase=23128;TENOR=Os05t0567300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	28244337	28244772	.	-	.	Parent=Os05t0567300-01
Chr05	irgsp1_rep	five_prime_UTR	28244043	28244188	.	-	.	Parent=Os05t0567300-01
Chr05	irgsp1_rep	five_prime_UTR	28243906	28243951	.	-	.	Parent=Os05t0567300-01
Chr05	irgsp1_rep	CDS	28243804	28243905	.	-	0	Parent=Os05t0567300-01
Chr05	irgsp1_rep	CDS	28243598	28243711	.	-	0	Parent=Os05t0567300-01
Chr05	irgsp1_rep	CDS	28243386	28243511	.	-	0	Parent=Os05t0567300-01
Chr05	irgsp1_rep	CDS	28243027	28243125	.	-	0	Parent=Os05t0567300-01
Chr05	irgsp1_rep	CDS	28242839	28242940	.	-	0	Parent=Os05t0567300-01
Chr05	irgsp1_rep	CDS	28242533	28242613	.	-	0	Parent=Os05t0567300-01
Chr05	irgsp1_rep	CDS	28242344	28242430	.	-	0	Parent=Os05t0567300-01
Chr05	irgsp1_rep	three_prime_UTR	28242072	28242343	.	-	.	Parent=Os05t0567300-01
Chr05	irgsp1_rep	mRNA	28242344	28244712	.	-	.	ID=Os05t0567300-02;Name=Os05t0567300-02;Locus_id=Os05g0567300;RAP-DB Gene Symbol Synonym(s)=WSL6;RAP-DB Gene Name Synonym(s)=white stripe leaf6;CGSNL Gene Symbol=WSL6;CGSNL Gene Name=WHITE STRIPE LEAF 6;Oryzabase Gene Symbol Synonym(s)=OsWSL6;Oryzabase Gene Name Synonym(s)=white stripe leaf6;Note=Era-type GTP-binding protein%2C Chloroplast development;Transcript_evidence=B9FI63 (UniProt);ORF_evidence=B9FI63;GO=Molecular Function: RNA binding (GO:0003723),Molecular Function: GTP binding (GO:0005525);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),K homology domain superfamily%2C prokaryotic type (IPR009019),K homology domain-like%2C alpha/beta (IPR015946),GTP-binding protein Era (IPR005662),Era-type guanine nucleotide-binding (G) domain (IPR030388),GTP binding domain (IPR006073),Small GTP-binding protein domain (IPR005225),K Homology domain%2C type 2 (IPR004044);Manual Curation=June 3%2C 2019;Literature_PMID=31147815;Oryzabase=23128;Subcellular location=chloroplast (GO:0009507)
Chr05	irgsp1_rep	CDS	28244337	28244712	.	-	0	Parent=Os05t0567300-02
Chr05	irgsp1_rep	CDS	28244043	28244188	.	-	2	Parent=Os05t0567300-02
Chr05	irgsp1_rep	CDS	28243804	28243944	.	-	0	Parent=Os05t0567300-02
Chr05	irgsp1_rep	CDS	28243598	28243711	.	-	0	Parent=Os05t0567300-02
Chr05	irgsp1_rep	CDS	28243386	28243511	.	-	0	Parent=Os05t0567300-02
Chr05	irgsp1_rep	CDS	28243027	28243125	.	-	0	Parent=Os05t0567300-02
Chr05	irgsp1_rep	CDS	28242839	28242940	.	-	0	Parent=Os05t0567300-02
Chr05	irgsp1_rep	CDS	28242533	28242613	.	-	0	Parent=Os05t0567300-02
Chr05	irgsp1_rep	CDS	28242344	28242430	.	-	0	Parent=Os05t0567300-02
Chr05	irgsp1_rep	mRNA	28245031	28249577	.	+	.	ID=Os05t0567400-01;Name=Os05t0567400-01;Locus_id=Os05g0567400;Note=Ribosomal RNA methyltransferase J domain containing protein.;Transcript_evidence=AK101119 (DDBJ%2C Best hit);ORF_evidence=Q1EPL1 (UniProt);GO=Biological Process: RNA methylation (GO:0001510),Biological Process: rRNA processing (GO:0006364),Biological Process: methylation (GO:0032259),Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Ribosomal RNA methyltransferase RrmJ/FtsJ (IPR002877),Ribosomal RNA methyltransferase%2C Spb1%2C C-terminal (IPR012920),Ribosomal RNA large subunit methyltransferase E (IPR015507),Ribosomal RNA methyltransferase Spb1%2C domain of unknown function DUF3381 (IPR024576);NIAS_FLcDNA=J033025I04;Expression=AK101119;TENOR=Os05t0567400-01;KEGG=Os05t0567400-01
Chr05	irgsp1_rep	five_prime_UTR	28245031	28245145	.	+	.	Parent=Os05t0567400-01
Chr05	irgsp1_rep	CDS	28245146	28245619	.	+	0	Parent=Os05t0567400-01
Chr05	irgsp1_rep	CDS	28245981	28246028	.	+	0	Parent=Os05t0567400-01
Chr05	irgsp1_rep	CDS	28246110	28246263	.	+	0	Parent=Os05t0567400-01
Chr05	irgsp1_rep	CDS	28246358	28246406	.	+	2	Parent=Os05t0567400-01
Chr05	irgsp1_rep	CDS	28246660	28246822	.	+	1	Parent=Os05t0567400-01
Chr05	irgsp1_rep	CDS	28246921	28246982	.	+	0	Parent=Os05t0567400-01
Chr05	irgsp1_rep	CDS	28247146	28247329	.	+	1	Parent=Os05t0567400-01
Chr05	irgsp1_rep	CDS	28247419	28247508	.	+	0	Parent=Os05t0567400-01
Chr05	irgsp1_rep	CDS	28247879	28248012	.	+	0	Parent=Os05t0567400-01
Chr05	irgsp1_rep	CDS	28248130	28248262	.	+	1	Parent=Os05t0567400-01
Chr05	irgsp1_rep	CDS	28248429	28249397	.	+	0	Parent=Os05t0567400-01
Chr05	irgsp1_rep	three_prime_UTR	28249398	28249577	.	+	.	Parent=Os05t0567400-01
Chr05	irgsp1_rep	mRNA	28251313	28256757	.	-	.	ID=Os05t0567500-01;Name=Os05t0567500-01;Locus_id=Os05g0567500;Oryzabase Gene Symbol Synonym(s)=AlkA;Note=HhH-GPD domain domain containing protein.;Transcript_evidence=AK121133 (DDBJ%2C Best hit);ORF_evidence=NP_001151950.1 (RefSeq);GO=Biological Process: DNA repair (GO:0006281),Biological Process: base-excision repair (GO:0006284),Molecular Function: catalytic activity (GO:0003824);InterPro=HhH-GPD domain (IPR003265),DNA glycosylase (IPR011257),Helix-turn-helix%2C base-excision DNA repair%2C C-terminal (IPR023170);NIAS_FLcDNA=J023075P20;Oryzabase=21279;Expression=AK121133;TENOR=Os05t0567500-01;KEGG=Os05t0567500-01 (EC:3.2.2.21)
Chr05	irgsp1_rep	five_prime_UTR	28256717	28256757	.	-	.	Parent=Os05t0567500-01
Chr05	irgsp1_rep	CDS	28255844	28256716	.	-	0	Parent=Os05t0567500-01
Chr05	irgsp1_rep	three_prime_UTR	28253609	28253938	.	-	.	Parent=Os05t0567500-01
Chr05	irgsp1_rep	three_prime_UTR	28252715	28253530	.	-	.	Parent=Os05t0567500-01
Chr05	irgsp1_rep	three_prime_UTR	28252488	28252616	.	-	.	Parent=Os05t0567500-01
Chr05	irgsp1_rep	three_prime_UTR	28251973	28252421	.	-	.	Parent=Os05t0567500-01
Chr05	irgsp1_rep	three_prime_UTR	28251641	28251886	.	-	.	Parent=Os05t0567500-01
Chr05	irgsp1_rep	three_prime_UTR	28251313	28251555	.	-	.	Parent=Os05t0567500-01
Chr05	irgsp1_rep	mRNA	28255636	28256756	.	-	.	ID=Os05t0567500-02;Name=Os05t0567500-02;Locus_id=Os05g0567500;Oryzabase Gene Symbol Synonym(s)=AlkA;Note=HhH-GPD domain domain containing protein.;Transcript_evidence=AK073046 (DDBJ%2C Best hit);ORF_evidence=NP_001151950.1 (RefSeq);GO=Biological Process: DNA repair (GO:0006281),Biological Process: base-excision repair (GO:0006284),Molecular Function: catalytic activity (GO:0003824);InterPro=HhH-GPD domain (IPR003265),DNA glycosylase (IPR011257),Helix-turn-helix%2C base-excision DNA repair%2C C-terminal (IPR023170);NIAS_FLcDNA=J033003A01;Oryzabase=21279;Expression=AK073046;TENOR=Os05t0567500-02;KEGG=Os05t0567500-02 (EC:3.2.2.21)
Chr05	irgsp1_rep	five_prime_UTR	28256717	28256756	.	-	.	Parent=Os05t0567500-02
Chr05	irgsp1_rep	CDS	28255844	28256716	.	-	0	Parent=Os05t0567500-02
Chr05	irgsp1_rep	three_prime_UTR	28255636	28255843	.	-	.	Parent=Os05t0567500-02
Chr05	irgsp1_rep	mRNA	28253508	28255090	.	+	.	ID=Os05t0567600-00;Name=Os05t0567600-00;Locus_id=Os05g0567600;Note=Similar to SANT/MYB protein.;Transcript_evidence=AK361203 (DDBJ);ORF_evidence=NP_001147389.1 (RefSeq);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),MYB-like (IPR017877);TENOR=Os05t0567600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	28253508	28253625	.	+	.	Parent=Os05t0567600-00
Chr05	irgsp1_rep	CDS	28253626	28253883	.	+	0	Parent=Os05t0567600-00
Chr05	irgsp1_rep	three_prime_UTR	28253884	28253884	.	+	.	Parent=Os05t0567600-00
Chr05	irgsp1_rep	three_prime_UTR	28254801	28255090	.	+	.	Parent=Os05t0567600-00
Chr05	irgsp1_rep	mRNA	28258419	28262402	.	-	.	ID=Os05t0567650-00;Name=Os05t0567650-00;Locus_id=Os05g0567650;Note=Hypothetical protein.;Transcript_evidence=tplb0033n03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0567650-00
Chr05	irgsp1_rep	five_prime_UTR	28262057	28262402	.	-	.	Parent=Os05t0567650-00
Chr05	irgsp1_rep	five_prime_UTR	28261848	28261958	.	-	.	Parent=Os05t0567650-00
Chr05	irgsp1_rep	five_prime_UTR	28261648	28261710	.	-	.	Parent=Os05t0567650-00
Chr05	irgsp1_rep	five_prime_UTR	28261487	28261564	.	-	.	Parent=Os05t0567650-00
Chr05	irgsp1_rep	five_prime_UTR	28261303	28261334	.	-	.	Parent=Os05t0567650-00
Chr05	irgsp1_rep	five_prime_UTR	28261113	28261223	.	-	.	Parent=Os05t0567650-00
Chr05	irgsp1_rep	five_prime_UTR	28260850	28260951	.	-	.	Parent=Os05t0567650-00
Chr05	irgsp1_rep	five_prime_UTR	28260686	28260765	.	-	.	Parent=Os05t0567650-00
Chr05	irgsp1_rep	five_prime_UTR	28260397	28260531	.	-	.	Parent=Os05t0567650-00
Chr05	irgsp1_rep	five_prime_UTR	28260056	28260134	.	-	.	Parent=Os05t0567650-00
Chr05	irgsp1_rep	five_prime_UTR	28259885	28259958	.	-	.	Parent=Os05t0567650-00
Chr05	irgsp1_rep	five_prime_UTR	28259618	28259667	.	-	.	Parent=Os05t0567650-00
Chr05	irgsp1_rep	five_prime_UTR	28259483	28259532	.	-	.	Parent=Os05t0567650-00
Chr05	irgsp1_rep	five_prime_UTR	28258913	28259023	.	-	.	Parent=Os05t0567650-00
Chr05	irgsp1_rep	five_prime_UTR	28258800	28258814	.	-	.	Parent=Os05t0567650-00
Chr05	irgsp1_rep	CDS	28258419	28258799	.	-	0	Parent=Os05t0567650-00
Chr05	irgsp1_rep	mRNA	28258432	28262464	.	+	.	ID=Os05t0567700-01;Name=Os05t0567700-01;Locus_id=Os05g0567700;Note=Similar to Integral membrane protein.;Transcript_evidence=AK065497 (DDBJ%2C Best hit);ORF_evidence=NP_001148779.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857);InterPro=General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J013023P09;Expression=AK065497;TENOR=Os05t0567700-01;KEGG=Os05t0567700-01
Chr05	irgsp1_rep	five_prime_UTR	28258432	28258503	.	+	.	Parent=Os05t0567700-01
Chr05	irgsp1_rep	CDS	28258504	28258806	.	+	0	Parent=Os05t0567700-01
Chr05	irgsp1_rep	CDS	28258904	28258993	.	+	0	Parent=Os05t0567700-01
Chr05	irgsp1_rep	CDS	28259456	28259515	.	+	0	Parent=Os05t0567700-01
Chr05	irgsp1_rep	CDS	28259600	28259749	.	+	0	Parent=Os05t0567700-01
Chr05	irgsp1_rep	three_prime_UTR	28259750	28259953	.	+	.	Parent=Os05t0567700-01
Chr05	irgsp1_rep	three_prime_UTR	28260045	28260120	.	+	.	Parent=Os05t0567700-01
Chr05	irgsp1_rep	three_prime_UTR	28260298	28260362	.	+	.	Parent=Os05t0567700-01
Chr05	irgsp1_rep	three_prime_UTR	28260441	28260531	.	+	.	Parent=Os05t0567700-01
Chr05	irgsp1_rep	three_prime_UTR	28260686	28260768	.	+	.	Parent=Os05t0567700-01
Chr05	irgsp1_rep	three_prime_UTR	28260852	28261215	.	+	.	Parent=Os05t0567700-01
Chr05	irgsp1_rep	three_prime_UTR	28261295	28261354	.	+	.	Parent=Os05t0567700-01
Chr05	irgsp1_rep	three_prime_UTR	28261505	28261570	.	+	.	Parent=Os05t0567700-01
Chr05	irgsp1_rep	three_prime_UTR	28261653	28261712	.	+	.	Parent=Os05t0567700-01
Chr05	irgsp1_rep	three_prime_UTR	28261850	28261964	.	+	.	Parent=Os05t0567700-01
Chr05	irgsp1_rep	three_prime_UTR	28262059	28262464	.	+	.	Parent=Os05t0567700-01
Chr05	irgsp1_rep	mRNA	28264787	28266375	.	+	.	ID=Os05t0567800-01;Name=Os05t0567800-01;Locus_id=Os05g0567800;Note=Similar to solute carrier family 2%2C facilitated glucose transporter member 8.;Transcript_evidence=AK108622 (DDBJ%2C Best hit);ORF_evidence=NP_001147831.1 (RefSeq);NIAS_FLcDNA=002-147-D06;TENOR=Os05t0567800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	28264787	28265058	.	+	.	Parent=Os05t0567800-01
Chr05	irgsp1_rep	CDS	28265059	28265436	.	+	0	Parent=Os05t0567800-01
Chr05	irgsp1_rep	three_prime_UTR	28265437	28266375	.	+	.	Parent=Os05t0567800-01
Chr05	irgsp1_rep	mRNA	28264890	28269370	.	+	.	ID=Os05t0567800-02;Name=Os05t0567800-02;Locus_id=Os05g0567800;Note=Similar to Integral membrane protein.;Transcript_evidence=AK100792 (DDBJ%2C Best hit);ORF_evidence=NP_001147831.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J023121D20;Expression=AK100792;TENOR=Os05t0567800-02;KEGG=Os05t0567800-02
Chr05	irgsp1_rep	five_prime_UTR	28264890	28265058	.	+	.	Parent=Os05t0567800-02
Chr05	irgsp1_rep	CDS	28265059	28265358	.	+	0	Parent=Os05t0567800-02
Chr05	irgsp1_rep	CDS	28265457	28265546	.	+	0	Parent=Os05t0567800-02
Chr05	irgsp1_rep	CDS	28266096	28266155	.	+	0	Parent=Os05t0567800-02
Chr05	irgsp1_rep	CDS	28266238	28266303	.	+	0	Parent=Os05t0567800-02
Chr05	irgsp1_rep	CDS	28266487	28266552	.	+	0	Parent=Os05t0567800-02
Chr05	irgsp1_rep	CDS	28266656	28266731	.	+	0	Parent=Os05t0567800-02
Chr05	irgsp1_rep	CDS	28267047	28267111	.	+	2	Parent=Os05t0567800-02
Chr05	irgsp1_rep	CDS	28267205	28267297	.	+	0	Parent=Os05t0567800-02
Chr05	irgsp1_rep	CDS	28267385	28267465	.	+	0	Parent=Os05t0567800-02
Chr05	irgsp1_rep	CDS	28267564	28267648	.	+	0	Parent=Os05t0567800-02
Chr05	irgsp1_rep	CDS	28267972	28268018	.	+	2	Parent=Os05t0567800-02
Chr05	irgsp1_rep	CDS	28268120	28268182	.	+	0	Parent=Os05t0567800-02
Chr05	irgsp1_rep	CDS	28268265	28268324	.	+	0	Parent=Os05t0567800-02
Chr05	irgsp1_rep	CDS	28268483	28268548	.	+	0	Parent=Os05t0567800-02
Chr05	irgsp1_rep	CDS	28268640	28268699	.	+	0	Parent=Os05t0567800-02
Chr05	irgsp1_rep	CDS	28268824	28268938	.	+	0	Parent=Os05t0567800-02
Chr05	irgsp1_rep	CDS	28269064	28269176	.	+	2	Parent=Os05t0567800-02
Chr05	irgsp1_rep	three_prime_UTR	28269177	28269370	.	+	.	Parent=Os05t0567800-02
Chr05	irgsp1_rep	mRNA	28264941	28269376	.	-	.	ID=Os05t0567850-00;Name=Os05t0567850-00;Locus_id=Os05g0567850;Note=Hypothetical protein.;Transcript_evidence=tplb0033n03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0567850-00
Chr05	irgsp1_rep	five_prime_UTR	28269068	28269376	.	-	.	Parent=Os05t0567850-00
Chr05	irgsp1_rep	five_prime_UTR	28268820	28268945	.	-	.	Parent=Os05t0567850-00
Chr05	irgsp1_rep	five_prime_UTR	28268631	28268695	.	-	.	Parent=Os05t0567850-00
Chr05	irgsp1_rep	five_prime_UTR	28268496	28268540	.	-	.	Parent=Os05t0567850-00
Chr05	irgsp1_rep	five_prime_UTR	28268259	28268332	.	-	.	Parent=Os05t0567850-00
Chr05	irgsp1_rep	five_prime_UTR	28268105	28268176	.	-	.	Parent=Os05t0567850-00
Chr05	irgsp1_rep	five_prime_UTR	28267556	28267675	.	-	.	Parent=Os05t0567850-00
Chr05	irgsp1_rep	five_prime_UTR	28267383	28267459	.	-	.	Parent=Os05t0567850-00
Chr05	irgsp1_rep	five_prime_UTR	28267153	28267295	.	-	.	Parent=Os05t0567850-00
Chr05	irgsp1_rep	five_prime_UTR	28266667	28266747	.	-	.	Parent=Os05t0567850-00
Chr05	irgsp1_rep	five_prime_UTR	28266459	28266561	.	-	.	Parent=Os05t0567850-00
Chr05	irgsp1_rep	five_prime_UTR	28266095	28266193	.	-	.	Parent=Os05t0567850-00
Chr05	irgsp1_rep	five_prime_UTR	28265495	28265545	.	-	.	Parent=Os05t0567850-00
Chr05	irgsp1_rep	CDS	28265442	28265494	.	-	0	Parent=Os05t0567850-00
Chr05	irgsp1_rep	CDS	28265106	28265343	.	-	1	Parent=Os05t0567850-00
Chr05	irgsp1_rep	three_prime_UTR	28264941	28265105	.	-	.	Parent=Os05t0567850-00
Chr05	irgsp1_rep	mRNA	28271813	28272705	.	-	.	ID=Os05t0567900-00;Name=Os05t0567900-00;Locus_id=Os05g0567900;Oryzabase Gene Symbol Synonym(s)=OsGATA8%2C GATA8%2C OsGATA14%2C GATA14;Oryzabase Gene Name Synonym(s)=GATA transcription factor 8%2C GATA factor 8;Note=Hypothetical conserved gene.;Transcript_evidence=GU722206 (DDBJ);ORF_evidence=B9FLN6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Zinc finger%2C GATA-type (IPR000679),Zinc finger%2C NHR/GATA-type (IPR013088);Oryzabase=20508;TENOR=Os05t0567900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	28272259	28272705	.	-	0	Parent=Os05t0567900-00
Chr05	irgsp1_rep	CDS	28271822	28272127	.	-	0	Parent=Os05t0567900-00
Chr05	irgsp1_rep	three_prime_UTR	28271813	28271821	.	-	.	Parent=Os05t0567900-00
Chr05	irgsp1_rep	mRNA	28278858	28281235	.	-	.	ID=Os05t0568000-02;Name=Os05t0568000-02;Locus_id=Os05g0568000;Oryzabase Gene Symbol Synonym(s)=KCS1%2C OsKCS1;Note=Similar to FAE1.;Transcript_evidence=AK119596 (DDBJ%2C Best hit),AK101103 (DDBJ%2C Best hit);ORF_evidence=A2Y7K8 (UniProt);NIAS_FLcDNA=002-117-D11,J033025C07;Oryzabase=18132;Expression=AK119596;TENOR=Os05t0568000-02;KEGG=Os05t0568000-02
Chr05	irgsp1_rep	five_prime_UTR	28280968	28281235	.	-	.	Parent=Os05t0568000-02
Chr05	irgsp1_rep	CDS	28279423	28280967	.	-	0	Parent=Os05t0568000-02
Chr05	irgsp1_rep	three_prime_UTR	28278858	28279422	.	-	.	Parent=Os05t0568000-02
Chr05	irgsp1_rep	mRNA	28289829	28293256	.	+	.	ID=Os05t0568100-01;Name=Os05t0568100-01;Locus_id=Os05g0568100;CGSNL Gene Symbol=ISC5;CGSNL Gene Name=IRON-SULFUR CLUSTER PROTEIN 5;Oryzabase Gene Symbol Synonym(s)=OsISC5;Oryzabase Gene Name Synonym(s)=Iron-sulfur cluster protein 5;Note=Similar to Iron sulfur cluster assembly protein 1%2C mitochondrial precursor (Iron sulfur cluster scaffold protein 1).;Transcript_evidence=AK069724 (DDBJ%2C Best hit);ORF_evidence=B4FTN1 (UniProt);GO=Biological Process: iron-sulfur cluster assembly (GO:0016226),Molecular Function: iron ion binding (GO:0005506),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=NIF system FeS cluster assembly%2C NifU%2C N-terminal (IPR002871),ISC system FeS cluster assembly%2C IscU scaffold (IPR011339);NIAS_FLcDNA=J023030J11;Oryzabase=13420;Expression=AK069724;TENOR=Os05t0568100-01;KEGG=Os05t0568100-01
Chr05	irgsp1_rep	five_prime_UTR	28289829	28289917	.	+	.	Parent=Os05t0568100-01
Chr05	irgsp1_rep	CDS	28289918	28290251	.	+	0	Parent=Os05t0568100-01
Chr05	irgsp1_rep	CDS	28291398	28291452	.	+	2	Parent=Os05t0568100-01
Chr05	irgsp1_rep	CDS	28292774	28292903	.	+	1	Parent=Os05t0568100-01
Chr05	irgsp1_rep	three_prime_UTR	28292904	28293256	.	+	.	Parent=Os05t0568100-01
Chr05	irgsp1_rep	mRNA	28299369	28300093	.	-	.	ID=Os05t0568300-00;Name=Os05t0568300-00;Locus_id=Os05g0568300;Note=Similar to 50S ribosomal protein L12%2C chloroplast precursor (CL12).;Transcript_evidence=CU405781 (DDBJ%2C Best hit);ORF_evidence=O22386-2 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L7/L12 (IPR000206),Ribosomal protein L7/L12%2C oligomerisation (IPR008932),Ribosomal protein L7/L12%2C C-terminal (IPR013823),Ribosomal protein L7/L12%2C C-terminal/adaptor protein ClpS-like (IPR014719);TENOR=Os05t0568300-00;KEGG=Os05t0568300-00
Chr05	irgsp1_rep	five_prime_UTR	28300047	28300093	.	-	.	Parent=Os05t0568300-00
Chr05	irgsp1_rep	CDS	28299507	28300046	.	-	0	Parent=Os05t0568300-00
Chr05	irgsp1_rep	three_prime_UTR	28299369	28299506	.	-	.	Parent=Os05t0568300-00
Chr05	irgsp1_rep	mRNA	28307089	28308038	.	+	.	ID=Os05t0568600-01;Name=Os05t0568600-01;Locus_id=Os05g0568600;Note=Protein of unknown function DUF1645 family protein.;Transcript_evidence=AK063781 (DDBJ%2C Best hit);ORF_evidence=B9FI71 (UniProt);InterPro=Protein of unknown function DUF1645 (IPR012442);NIAS_FLcDNA=001-121-D07;Expression=AK063781;TENOR=Os05t0568600-01;KEGG=Os05t0568600-01
Chr05	irgsp1_rep	five_prime_UTR	28307089	28307129	.	+	.	Parent=Os05t0568600-01
Chr05	irgsp1_rep	CDS	28307130	28307825	.	+	0	Parent=Os05t0568600-01
Chr05	irgsp1_rep	three_prime_UTR	28307826	28308038	.	+	.	Parent=Os05t0568600-01
Chr05	irgsp1_rep	mRNA	28310925	28311933	.	+	.	ID=Os05t0568800-01;Name=Os05t0568800-01;Locus_id=Os05g0568800;Note=Protein of unknown function DUF1645 family protein.;Transcript_evidence=AK059883 (DDBJ%2C Best hit);ORF_evidence=B8AWS9 (UniProt);InterPro=Protein of unknown function DUF1645 (IPR012442);NIAS_FLcDNA=006-208-A04;Expression=AK059883;TENOR=Os05t0568800-01;KEGG=Os05t0568800-01
Chr05	irgsp1_rep	five_prime_UTR	28310925	28310979	.	+	.	Parent=Os05t0568800-01
Chr05	irgsp1_rep	CDS	28310980	28311669	.	+	0	Parent=Os05t0568800-01
Chr05	irgsp1_rep	three_prime_UTR	28311670	28311933	.	+	.	Parent=Os05t0568800-01
Chr05	irgsp1_rep	mRNA	28315242	28318639	.	-	.	ID=Os05t0568900-01;Name=Os05t0568900-01;Locus_id=Os05g0568900;Oryzabase Gene Symbol Synonym(s)=OsDegp9%2C DEGP9%2C OsDeg1;Oryzabase Gene Name Synonym(s)=Deg protease 9%2C DEG PROTEASE 9;Note=Similar to Protease Do-like 1%2C chloroplast precursor (EC 3.4.21.-).;Transcript_evidence=AK120626 (DDBJ%2C Best hit),AK061450 (DDBJ%2C Best hit),AK067365 (DDBJ%2C Best hit);ORF_evidence=NP_189431.2 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: catalytic activity (GO:0003824),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: protein binding (GO:0005515);InterPro=Peptidase S1/S6%2C chymotrypsin/Hap (IPR001254),PDZ/DHR/GLGF (IPR001478),Peptidase S1C%2C HrtA/DegP2/Q/S (IPR001940),Peptidase cysteine/serine%2C trypsin-like (IPR009003);NIAS_FLcDNA=J013152N11,006-307-E05,J013102M20;Oryzabase=20085;TENOR=Os05t0568900-01
Chr05	irgsp1_rep	five_prime_UTR	28318611	28318639	.	-	.	Parent=Os05t0568900-01
Chr05	irgsp1_rep	CDS	28318195	28318610	.	-	0	Parent=Os05t0568900-01
Chr05	irgsp1_rep	CDS	28317992	28318114	.	-	1	Parent=Os05t0568900-01
Chr05	irgsp1_rep	CDS	28317175	28317346	.	-	1	Parent=Os05t0568900-01
Chr05	irgsp1_rep	CDS	28316638	28316675	.	-	0	Parent=Os05t0568900-01
Chr05	irgsp1_rep	CDS	28316336	28316534	.	-	1	Parent=Os05t0568900-01
Chr05	irgsp1_rep	CDS	28316097	28316249	.	-	0	Parent=Os05t0568900-01
Chr05	irgsp1_rep	CDS	28315574	28315708	.	-	0	Parent=Os05t0568900-01
Chr05	irgsp1_rep	CDS	28315416	28315493	.	-	0	Parent=Os05t0568900-01
Chr05	irgsp1_rep	three_prime_UTR	28315242	28315415	.	-	.	Parent=Os05t0568900-01
Chr05	irgsp1_rep	mRNA	28319716	28324481	.	-	.	ID=Os05t0569000-01;Name=Os05t0569000-01;Locus_id=Os05g0569000;Note=Hypothetical conserved gene.;Transcript_evidence=AK242172 (DDBJ%2C Best hit);ORF_evidence=B8AWT1 (UniProt);NIAS_FLcDNA=J075158C19;TENOR=Os05t0569000-01;KEGG=Os05t0569000-01
Chr05	irgsp1_rep	five_prime_UTR	28323982	28324481	.	-	.	Parent=Os05t0569000-01
Chr05	irgsp1_rep	CDS	28323696	28323981	.	-	0	Parent=Os05t0569000-01
Chr05	irgsp1_rep	CDS	28323283	28323374	.	-	2	Parent=Os05t0569000-01
Chr05	irgsp1_rep	CDS	28321618	28321711	.	-	0	Parent=Os05t0569000-01
Chr05	irgsp1_rep	CDS	28321427	28321531	.	-	2	Parent=Os05t0569000-01
Chr05	irgsp1_rep	CDS	28321169	28321341	.	-	2	Parent=Os05t0569000-01
Chr05	irgsp1_rep	CDS	28320872	28321096	.	-	0	Parent=Os05t0569000-01
Chr05	irgsp1_rep	CDS	28320688	28320783	.	-	0	Parent=Os05t0569000-01
Chr05	irgsp1_rep	CDS	28320474	28320560	.	-	0	Parent=Os05t0569000-01
Chr05	irgsp1_rep	three_prime_UTR	28319716	28320187	.	-	.	Parent=Os05t0569000-01
Chr05	irgsp1_rep	mRNA	28327419	28328783	.	+	.	ID=Os05t0569100-00;Name=Os05t0569100-00;Locus_id=Os05g0569100;Oryzabase Gene Symbol Synonym(s)=OsFbox279%2C Os_F0100;Oryzabase Gene Name Synonym(s)=F-box protein 279;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001174533.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17059;TENOR=Os05t0569100-00;KEGG=Os05t0569100-00
Chr05	irgsp1_rep	CDS	28327419	28328783	.	+	0	Parent=Os05t0569100-00
Chr05	irgsp1_rep	mRNA	28329422	28330634	.	+	.	ID=Os05t0569200-01;Name=Os05t0569200-01;Locus_id=Os05g0569200;Note=Protein of unknown function DUF3143 domain containing protein.;Transcript_evidence=AK109241 (DDBJ%2C Best hit);ORF_evidence=A2Y7L9 (UniProt);InterPro=Protein of unknown function DUF3143 (IPR021489);NIAS_FLcDNA=002-156-G02;Expression=AK109241;TENOR=Os05t0569200-01;KEGG=Os05t0569200-01
Chr05	irgsp1_rep	five_prime_UTR	28329422	28329445	.	+	.	Parent=Os05t0569200-01
Chr05	irgsp1_rep	CDS	28329446	28329810	.	+	0	Parent=Os05t0569200-01
Chr05	irgsp1_rep	CDS	28330277	28330382	.	+	1	Parent=Os05t0569200-01
Chr05	irgsp1_rep	three_prime_UTR	28330383	28330634	.	+	.	Parent=Os05t0569200-01
Chr05	irgsp1_rep	mRNA	28334780	28339606	.	+	.	ID=Os05t0569300-01;Name=Os05t0569300-01;Locus_id=Os05g0569300;CGSNL Gene Symbol=BZIP45;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 45;Oryzabase Gene Symbol Synonym(s)=OsbZIP45;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 45;Note=Similar to G-box binding factor 1.;Transcript_evidence=AK065440 (DDBJ%2C Best hit);ORF_evidence=NP_001105364.1 (RefSeq);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616),G-box binding%2C MFMR (IPR012900);NIAS_FLcDNA=J013020K21;Oryzabase=10130;Expression=AK065440;TENOR=Os05t0569300-01;KEGG=Os05t0569300-01
Chr05	irgsp1_rep	five_prime_UTR	28334780	28335011	.	+	.	Parent=Os05t0569300-01
Chr05	irgsp1_rep	five_prime_UTR	28335594	28335615	.	+	.	Parent=Os05t0569300-01
Chr05	irgsp1_rep	CDS	28335616	28335675	.	+	0	Parent=Os05t0569300-01
Chr05	irgsp1_rep	CDS	28336278	28336322	.	+	0	Parent=Os05t0569300-01
Chr05	irgsp1_rep	CDS	28336413	28336505	.	+	0	Parent=Os05t0569300-01
Chr05	irgsp1_rep	CDS	28336585	28336668	.	+	0	Parent=Os05t0569300-01
Chr05	irgsp1_rep	CDS	28337275	28337457	.	+	0	Parent=Os05t0569300-01
Chr05	irgsp1_rep	CDS	28337560	28337602	.	+	0	Parent=Os05t0569300-01
Chr05	irgsp1_rep	CDS	28337997	28338217	.	+	2	Parent=Os05t0569300-01
Chr05	irgsp1_rep	CDS	28338386	28338463	.	+	0	Parent=Os05t0569300-01
Chr05	irgsp1_rep	CDS	28338730	28338855	.	+	0	Parent=Os05t0569300-01
Chr05	irgsp1_rep	CDS	28338942	28339151	.	+	0	Parent=Os05t0569300-01
Chr05	irgsp1_rep	three_prime_UTR	28339152	28339606	.	+	.	Parent=Os05t0569300-01
Chr05	irgsp1_rep	mRNA	28342690	28345103	.	+	.	ID=Os05t0569400-01;Name=Os05t0569400-01;Locus_id=Os05g0569400;Note=Similar to apospory-associated protein C.;Transcript_evidence=AK100553 (DDBJ%2C Best hit);ORF_evidence=NP_001149116.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: isomerase activity (GO:0016853),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Aldose 1-epimerase (IPR008183),Glycoside hydrolase-type carbohydrate-binding%2C subgroup (IPR014718);NIAS_FLcDNA=J023103K14;TENOR=Os05t0569400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	28342690	28342748	.	+	.	Parent=Os05t0569400-01
Chr05	irgsp1_rep	CDS	28342749	28342865	.	+	0	Parent=Os05t0569400-01
Chr05	irgsp1_rep	CDS	28342977	28343126	.	+	0	Parent=Os05t0569400-01
Chr05	irgsp1_rep	three_prime_UTR	28343127	28343448	.	+	.	Parent=Os05t0569400-01
Chr05	irgsp1_rep	three_prime_UTR	28343574	28343737	.	+	.	Parent=Os05t0569400-01
Chr05	irgsp1_rep	three_prime_UTR	28343998	28344132	.	+	.	Parent=Os05t0569400-01
Chr05	irgsp1_rep	three_prime_UTR	28344234	28345103	.	+	.	Parent=Os05t0569400-01
Chr05	irgsp1_rep	mRNA	28342973	28344875	.	-	.	ID=Os05t0569450-00;Name=Os05t0569450-00;Locus_id=Os05g0569450;Note=Hypothetical protein.;Transcript_evidence=tplb0033p24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0569450-00
Chr05	irgsp1_rep	five_prime_UTR	28344856	28344875	.	-	.	Parent=Os05t0569450-00
Chr05	irgsp1_rep	CDS	28344669	28344855	.	-	0	Parent=Os05t0569450-00
Chr05	irgsp1_rep	CDS	28344512	28344585	.	-	2	Parent=Os05t0569450-00
Chr05	irgsp1_rep	three_prime_UTR	28344489	28344511	.	-	.	Parent=Os05t0569450-00
Chr05	irgsp1_rep	three_prime_UTR	28344231	28344334	.	-	.	Parent=Os05t0569450-00
Chr05	irgsp1_rep	three_prime_UTR	28343996	28344129	.	-	.	Parent=Os05t0569450-00
Chr05	irgsp1_rep	three_prime_UTR	28343570	28343735	.	-	.	Parent=Os05t0569450-00
Chr05	irgsp1_rep	three_prime_UTR	28343390	28343444	.	-	.	Parent=Os05t0569450-00
Chr05	irgsp1_rep	three_prime_UTR	28342973	28343049	.	-	.	Parent=Os05t0569450-00
Chr05	irgsp1_rep	mRNA	28346743	28347863	.	+	.	ID=Os05t0569500-01;Name=Os05t0569500-01;Locus_id=Os05g0569500;Note=Similar to Embryo-specific protein.;Transcript_evidence=AK073481 (DDBJ%2C Best hit);ORF_evidence=Q9ZNS9 (UniProt);InterPro=Protein of unknown function DUF1264 (IPR010686);NIAS_FLcDNA=J033045K24;Expression=AK073481;TENOR=Os05t0569500-01;KEGG=Os05t0569500-01
Chr05	irgsp1_rep	five_prime_UTR	28346743	28346792	.	+	.	Parent=Os05t0569500-01
Chr05	irgsp1_rep	CDS	28346793	28347566	.	+	0	Parent=Os05t0569500-01
Chr05	irgsp1_rep	three_prime_UTR	28347567	28347863	.	+	.	Parent=Os05t0569500-01
Chr05	irgsp1_rep	mRNA	28351859	28356807	.	-	.	ID=Os05t0569700-00;Name=Os05t0569700-00;Locus_id=Os05g0569700;Note=Similar to Glutamine amidotransferase%2C class I%2C active site.;Transcript_evidence=ab initio prediction;ORF_evidence=A2Q3J8 (UniProt);GO=Biological Process: pyrimidine nucleotide biosynthetic process (GO:0006221),Molecular Function: CTP synthase activity (GO:0003883);InterPro=CTP synthase (IPR004468),CTP synthase%2C N-terminal (IPR017456),Glutamine amidotransferase type 1 (IPR017926);TENOR=Os05t0569700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	28356690	28356807	.	-	0	Parent=Os05t0569700-00
Chr05	irgsp1_rep	CDS	28355998	28356077	.	-	2	Parent=Os05t0569700-00
Chr05	irgsp1_rep	CDS	28355820	28355906	.	-	0	Parent=Os05t0569700-00
Chr05	irgsp1_rep	CDS	28355105	28355222	.	-	0	Parent=Os05t0569700-00
Chr05	irgsp1_rep	CDS	28354747	28354811	.	-	2	Parent=Os05t0569700-00
Chr05	irgsp1_rep	CDS	28354128	28354174	.	-	0	Parent=Os05t0569700-00
Chr05	irgsp1_rep	CDS	28353969	28354038	.	-	1	Parent=Os05t0569700-00
Chr05	irgsp1_rep	CDS	28353607	28353669	.	-	0	Parent=Os05t0569700-00
Chr05	irgsp1_rep	CDS	28353420	28353509	.	-	0	Parent=Os05t0569700-00
Chr05	irgsp1_rep	CDS	28353295	28353333	.	-	0	Parent=Os05t0569700-00
Chr05	irgsp1_rep	CDS	28352986	28353213	.	-	0	Parent=Os05t0569700-00
Chr05	irgsp1_rep	CDS	28352659	28352744	.	-	0	Parent=Os05t0569700-00
Chr05	irgsp1_rep	CDS	28352525	28352573	.	-	1	Parent=Os05t0569700-00
Chr05	irgsp1_rep	CDS	28352332	28352412	.	-	0	Parent=Os05t0569700-00
Chr05	irgsp1_rep	CDS	28352141	28352234	.	-	0	Parent=Os05t0569700-00
Chr05	irgsp1_rep	CDS	28351859	28351980	.	-	2	Parent=Os05t0569700-00
Chr05	irgsp1_rep	mRNA	28352140	28356808	.	+	.	ID=Os05t0569750-00;Name=Os05t0569750-00;Locus_id=Os05g0569750;Note=Hypothetical protein.;Transcript_evidence=tplb0056h06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0569750-00
Chr05	irgsp1_rep	five_prime_UTR	28352140	28352221	.	+	.	Parent=Os05t0569750-00
Chr05	irgsp1_rep	five_prime_UTR	28352325	28352435	.	+	.	Parent=Os05t0569750-00
Chr05	irgsp1_rep	five_prime_UTR	28352632	28352743	.	+	.	Parent=Os05t0569750-00
Chr05	irgsp1_rep	five_prime_UTR	28352985	28353005	.	+	.	Parent=Os05t0569750-00
Chr05	irgsp1_rep	CDS	28353006	28353263	.	+	0	Parent=Os05t0569750-00
Chr05	irgsp1_rep	CDS	28353431	28353536	.	+	0	Parent=Os05t0569750-00
Chr05	irgsp1_rep	CDS	28354021	28354085	.	+	2	Parent=Os05t0569750-00
Chr05	irgsp1_rep	three_prime_UTR	28354086	28354171	.	+	.	Parent=Os05t0569750-00
Chr05	irgsp1_rep	three_prime_UTR	28354332	28354476	.	+	.	Parent=Os05t0569750-00
Chr05	irgsp1_rep	three_prime_UTR	28354910	28355212	.	+	.	Parent=Os05t0569750-00
Chr05	irgsp1_rep	three_prime_UTR	28355316	28355367	.	+	.	Parent=Os05t0569750-00
Chr05	irgsp1_rep	three_prime_UTR	28355809	28355904	.	+	.	Parent=Os05t0569750-00
Chr05	irgsp1_rep	three_prime_UTR	28355996	28356069	.	+	.	Parent=Os05t0569750-00
Chr05	irgsp1_rep	three_prime_UTR	28356683	28356808	.	+	.	Parent=Os05t0569750-00
Chr05	irgsp1_rep	mRNA	28357016	28359077	.	-	.	ID=Os05t0569800-01;Name=Os05t0569800-01;Locus_id=Os05g0569800;Note=Tho complex subunit 7 domain containing protein.;Transcript_evidence=AK063413 (DDBJ%2C Best hit);ORF_evidence=NP_001150324.1 (RefSeq);InterPro=Tho complex subunit 7/Mft1p (IPR008501),Tho complex subunit 7 (IPR018018);NIAS_FLcDNA=001-115-B06;Expression=AK063413;TENOR=Os05t0569800-01;KEGG=Os05t0569800-01
Chr05	irgsp1_rep	five_prime_UTR	28358956	28359077	.	-	.	Parent=Os05t0569800-01
Chr05	irgsp1_rep	five_prime_UTR	28358378	28358418	.	-	.	Parent=Os05t0569800-01
Chr05	irgsp1_rep	CDS	28357784	28358377	.	-	0	Parent=Os05t0569800-01
Chr05	irgsp1_rep	CDS	28357313	28357450	.	-	0	Parent=Os05t0569800-01
Chr05	irgsp1_rep	three_prime_UTR	28357016	28357312	.	-	.	Parent=Os05t0569800-01
Chr05	irgsp1_rep	mRNA	28360602	28361928	.	+	.	ID=Os05t0569900-01;Name=Os05t0569900-01;Locus_id=Os05g0569900;Note=B-block binding subunit of TFIIIC domain containing protein.;Transcript_evidence=AK069714 (DDBJ%2C Best hit);ORF_evidence=B9FLP4 (UniProt);InterPro=B-block binding subunit of TFIIIC (IPR007309),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=J023030K16;Expression=AK069714;TENOR=Os05t0569900-01;KEGG=Os05t0569900-01
Chr05	irgsp1_rep	five_prime_UTR	28360602	28360809	.	+	.	Parent=Os05t0569900-01
Chr05	irgsp1_rep	CDS	28360810	28361195	.	+	0	Parent=Os05t0569900-01
Chr05	irgsp1_rep	CDS	28361405	28361885	.	+	1	Parent=Os05t0569900-01
Chr05	irgsp1_rep	three_prime_UTR	28361886	28361928	.	+	.	Parent=Os05t0569900-01
Chr05	irgsp1_rep	mRNA	28360652	28361797	.	+	.	ID=Os05t0569900-02;Name=Os05t0569900-02;Locus_id=Os05g0569900;Note=Hypothetical conserved gene.;Transcript_evidence=AK069416 (DDBJ%2C Best hit);ORF_evidence=B9FLP4 (UniProt);InterPro=B-block binding subunit of TFIIIC (IPR007309),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=J023016D11;TENOR=Os05t0569900-02
Chr05	irgsp1_rep	five_prime_UTR	28360652	28360809	.	+	.	Parent=Os05t0569900-02
Chr05	irgsp1_rep	CDS	28360810	28361195	.	+	0	Parent=Os05t0569900-02
Chr05	irgsp1_rep	CDS	28361405	28361797	.	+	1	Parent=Os05t0569900-02
Chr05	irgsp1_rep	mRNA	28371002	28371195	.	-	.	ID=Os05t0570000-00;Name=Os05t0570000-00;Locus_id=Os05g0570000;Note=Non-protein coding transcript.;Transcript_evidence=U83835 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os05t0570000-00
Chr05	irgsp1_rep	exon	28371002	28371195	.	-	.	Parent=Os05t0570000-00
Chr05	irgsp1_rep	mRNA	28377522	28379212	.	+	.	ID=Os05t0570200-01;Name=Os05t0570200-01;Locus_id=Os05g0570200;Note=Protein of unknown function DUF295 domain containing protein.;Transcript_evidence=AK106827 (DDBJ%2C Best hit);ORF_evidence=A2Y7M7 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174);NIAS_FLcDNA=002-116-F02;TENOR=Os05t0570200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	28377522	28377705	.	+	.	Parent=Os05t0570200-01
Chr05	irgsp1_rep	CDS	28377706	28378941	.	+	0	Parent=Os05t0570200-01
Chr05	irgsp1_rep	three_prime_UTR	28378942	28379212	.	+	.	Parent=Os05t0570200-01
Chr05	irgsp1_rep	mRNA	28388746	28390246	.	-	.	ID=Os05t0570350-01;Name=Os05t0570350-01;Locus_id=Os05g0570350;Oryzabase Gene Symbol Synonym(s)=Os_F0697;Note=Protein of unknown function DUF295 domain containing protein.;Transcript_evidence=AK241838 (DDBJ%2C Best hit);ORF_evidence=GeneMark;InterPro=Protein of unknown function DUF295 (IPR005174);NIAS_FLcDNA=J065213J08;Oryzabase=17515;TENOR=Os05t0570350-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	28388921	28390246	.	-	0	Parent=Os05t0570350-01
Chr05	irgsp1_rep	three_prime_UTR	28388746	28388920	.	-	.	Parent=Os05t0570350-01
Chr05	irgsp1_rep	mRNA	28392188	28397563	.	-	.	ID=Os05t0570375-00;Name=Os05t0570375-00;Locus_id=Os05g0570375;Note=Hypothetical protein.;Transcript_evidence=tplb0056h06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0570375-00
Chr05	irgsp1_rep	five_prime_UTR	28397363	28397563	.	-	.	Parent=Os05t0570375-00
Chr05	irgsp1_rep	five_prime_UTR	28396683	28396770	.	-	.	Parent=Os05t0570375-00
Chr05	irgsp1_rep	five_prime_UTR	28396364	28396387	.	-	.	Parent=Os05t0570375-00
Chr05	irgsp1_rep	CDS	28396142	28396363	.	-	0	Parent=Os05t0570375-00
Chr05	irgsp1_rep	three_prime_UTR	28396120	28396141	.	-	.	Parent=Os05t0570375-00
Chr05	irgsp1_rep	three_prime_UTR	28395822	28395954	.	-	.	Parent=Os05t0570375-00
Chr05	irgsp1_rep	three_prime_UTR	28395342	28395463	.	-	.	Parent=Os05t0570375-00
Chr05	irgsp1_rep	three_prime_UTR	28395218	28395253	.	-	.	Parent=Os05t0570375-00
Chr05	irgsp1_rep	three_prime_UTR	28394883	28395041	.	-	.	Parent=Os05t0570375-00
Chr05	irgsp1_rep	three_prime_UTR	28394517	28394645	.	-	.	Parent=Os05t0570375-00
Chr05	irgsp1_rep	three_prime_UTR	28394082	28394273	.	-	.	Parent=Os05t0570375-00
Chr05	irgsp1_rep	three_prime_UTR	28393501	28393600	.	-	.	Parent=Os05t0570375-00
Chr05	irgsp1_rep	three_prime_UTR	28393328	28393410	.	-	.	Parent=Os05t0570375-00
Chr05	irgsp1_rep	three_prime_UTR	28392188	28392305	.	-	.	Parent=Os05t0570375-00
Chr05	irgsp1_rep	mRNA	28392188	28397924	.	+	.	ID=Os05t0570400-00;Name=Os05t0570400-00;Locus_id=Os05g0570400;Note=Similar to CTP synthase.;Transcript_evidence=AK367678 (DDBJ);ORF_evidence=NP_001152016.1 (RefSeq);GO=Biological Process: pyrimidine nucleotide biosynthetic process (GO:0006221),Molecular Function: CTP synthase activity (GO:0003883);InterPro=CTP synthase (IPR004468),CTP synthase%2C N-terminal (IPR017456),Glutamine amidotransferase type 1 (IPR017926);TENOR=Os05t0570400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	28392188	28392188	.	+	.	Parent=Os05t0570400-00
Chr05	irgsp1_rep	CDS	28392189	28392306	.	+	0	Parent=Os05t0570400-00
Chr05	irgsp1_rep	CDS	28393329	28393408	.	+	2	Parent=Os05t0570400-00
Chr05	irgsp1_rep	CDS	28393499	28393585	.	+	0	Parent=Os05t0570400-00
Chr05	irgsp1_rep	CDS	28393965	28394015	.	+	0	Parent=Os05t0570400-00
Chr05	irgsp1_rep	CDS	28394122	28394239	.	+	0	Parent=Os05t0570400-00
Chr05	irgsp1_rep	CDS	28394396	28394452	.	+	2	Parent=Os05t0570400-00
Chr05	irgsp1_rep	CDS	28394543	28394607	.	+	2	Parent=Os05t0570400-00
Chr05	irgsp1_rep	CDS	28394716	28394799	.	+	0	Parent=Os05t0570400-00
Chr05	irgsp1_rep	CDS	28394925	28394975	.	+	0	Parent=Os05t0570400-00
Chr05	irgsp1_rep	CDS	28395060	28395122	.	+	0	Parent=Os05t0570400-00
Chr05	irgsp1_rep	CDS	28395215	28395261	.	+	0	Parent=Os05t0570400-00
Chr05	irgsp1_rep	CDS	28395350	28395419	.	+	1	Parent=Os05t0570400-00
Chr05	irgsp1_rep	CDS	28395689	28395751	.	+	0	Parent=Os05t0570400-00
Chr05	irgsp1_rep	CDS	28395849	28395938	.	+	0	Parent=Os05t0570400-00
Chr05	irgsp1_rep	CDS	28396026	28396064	.	+	0	Parent=Os05t0570400-00
Chr05	irgsp1_rep	CDS	28396146	28396373	.	+	0	Parent=Os05t0570400-00
Chr05	irgsp1_rep	CDS	28396674	28396759	.	+	0	Parent=Os05t0570400-00
Chr05	irgsp1_rep	CDS	28396841	28396889	.	+	1	Parent=Os05t0570400-00
Chr05	irgsp1_rep	CDS	28397298	28397378	.	+	0	Parent=Os05t0570400-00
Chr05	irgsp1_rep	CDS	28397469	28397562	.	+	0	Parent=Os05t0570400-00
Chr05	irgsp1_rep	CDS	28397722	28397924	.	+	2	Parent=Os05t0570400-00
Chr05	irgsp1_rep	mRNA	28443469	28444289	.	-	.	ID=Os05t0570900-00;Name=Os05t0570900-00;Locus_id=Os05g0570900;CGSNL Gene Symbol=ENODL15;CGSNL Gene Name=EARLY NODULIN LIKE PROTEIN 15;Oryzabase Gene Symbol Synonym(s)=OsENODL15;Oryzabase Gene Name Synonym(s)=early nodulin-like protein 15;Note=Cupredoxin domain containing protein.;Transcript_evidence=BT055583 (DDBJ);ORF_evidence=NP_001056369.1 (RefSeq);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);Oryzabase=9740;TENOR=Os05t0570900-00;KEGG=Os05t0570900-00
Chr05	irgsp1_rep	five_prime_UTR	28444138	28444289	.	-	.	Parent=Os05t0570900-00
Chr05	irgsp1_rep	CDS	28443954	28444137	.	-	0	Parent=Os05t0570900-00
Chr05	irgsp1_rep	CDS	28443501	28443862	.	-	2	Parent=Os05t0570900-00
Chr05	irgsp1_rep	three_prime_UTR	28443469	28443500	.	-	.	Parent=Os05t0570900-00
Chr05	irgsp1_rep	mRNA	28445224	28452931	.	-	.	ID=Os05t0571000-01;Name=Os05t0571000-01;Locus_id=Os05g0571000;RAP-DB Gene Symbol Synonym(s)=OsSPA1;RAP-DB Gene Name Synonym(s)=SPA1-like;Oryzabase Gene Symbol Synonym(s)=OsWD40-123%2C OsSPA1;Oryzabase Gene Name Synonym(s)=SPA1-like;Note=SPA ortholog%2C WD40 repeat-like domain containing protein;Transcript_evidence=AK111749;ORF_evidence=Q65XL7;GO=Molecular Function: protein binding (GO:0005515);InterPro=Protein kinase-like domain superfamily (IPR011009),WD40/YVTN repeat-like-containing domain superfamily (IPR015943),WD40-repeat-containing domain superfamily (IPR036322),WD40-repeat-containing domain (IPR017986),WD40 repeat (IPR001680),G-protein beta WD-40 repeat (IPR020472),WD40 repeat%2C conserved site (IPR019775);NIAS_FLcDNA=J023054J06;Manual Curation=October 13%2C 2020;Literature_PMID=24985152;Oryzabase=10804;Expression=AK111749;TENOR=Os05t0571000-01;KEGG=Os05t0571000-01
Chr05	irgsp1_rep	five_prime_UTR	28452677	28452931	.	-	.	Parent=Os05t0571000-01
Chr05	irgsp1_rep	five_prime_UTR	28452424	28452586	.	-	.	Parent=Os05t0571000-01
Chr05	irgsp1_rep	CDS	28450717	28452423	.	-	0	Parent=Os05t0571000-01
Chr05	irgsp1_rep	CDS	28449891	28450048	.	-	0	Parent=Os05t0571000-01
Chr05	irgsp1_rep	CDS	28448490	28449342	.	-	1	Parent=Os05t0571000-01
Chr05	irgsp1_rep	CDS	28447412	28447558	.	-	0	Parent=Os05t0571000-01
Chr05	irgsp1_rep	CDS	28446476	28446793	.	-	0	Parent=Os05t0571000-01
Chr05	irgsp1_rep	CDS	28446335	28446394	.	-	0	Parent=Os05t0571000-01
Chr05	irgsp1_rep	CDS	28445722	28445913	.	-	0	Parent=Os05t0571000-01
Chr05	irgsp1_rep	three_prime_UTR	28445224	28445721	.	-	.	Parent=Os05t0571000-01
Chr05	irgsp1_rep	mRNA	28445224	28451170	.	-	.	ID=Os05t0571000-02;Name=Os05t0571000-02;Locus_id=Os05g0571000;Oryzabase Gene Symbol Synonym(s)=OsWD40-123%2C OsSPA1;Oryzabase Gene Name Synonym(s)=SPA1-like;Note=Similar to SPA1 (SUPPRESSOR OF PHYA-105 1)%3B protein binding / signal transducer.;Transcript_evidence=AK120171 (DDBJ%2C Best hit);ORF_evidence=NP_182157.2 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=WD40 repeat (IPR001680),Protein kinase-like domain (IPR011009),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),Serine/threonine-protein kinase-like domain (IPR017442),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J013032J17;Oryzabase=10804;TENOR=Os05t0571000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	28451170	28451170	.	-	.	Parent=Os05t0571000-02
Chr05	irgsp1_rep	CDS	28450717	28451169	.	-	0	Parent=Os05t0571000-02
Chr05	irgsp1_rep	CDS	28449891	28450048	.	-	0	Parent=Os05t0571000-02
Chr05	irgsp1_rep	CDS	28448490	28449342	.	-	1	Parent=Os05t0571000-02
Chr05	irgsp1_rep	CDS	28447412	28447558	.	-	0	Parent=Os05t0571000-02
Chr05	irgsp1_rep	CDS	28446476	28446793	.	-	0	Parent=Os05t0571000-02
Chr05	irgsp1_rep	CDS	28446335	28446394	.	-	0	Parent=Os05t0571000-02
Chr05	irgsp1_rep	CDS	28445722	28445913	.	-	0	Parent=Os05t0571000-02
Chr05	irgsp1_rep	three_prime_UTR	28445224	28445721	.	-	.	Parent=Os05t0571000-02
Chr05	irgsp1_rep	mRNA	28464100	28466020	.	+	.	ID=Os05t0571100-01;Name=Os05t0571100-01;Locus_id=Os05g0571100;Note=Peptidase C12%2C ubiquitin carboxyl-terminal hydrolase 1 domain containing protein.;Transcript_evidence=AK068658 (DDBJ%2C Best hit);ORF_evidence=NP_001118908.1 (RefSeq);InterPro=Plant organelle RNA recognition domain (IPR021099);NIAS_FLcDNA=J013161J09;Expression=AK068658;TENOR=Os05t0571100-01;KEGG=Os05t0571100-01
Chr05	irgsp1_rep	five_prime_UTR	28464100	28464206	.	+	.	Parent=Os05t0571100-01
Chr05	irgsp1_rep	CDS	28464207	28465736	.	+	0	Parent=Os05t0571100-01
Chr05	irgsp1_rep	three_prime_UTR	28465737	28466020	.	+	.	Parent=Os05t0571100-01
Chr05	irgsp1_rep	mRNA	28464165	28465923	.	+	.	ID=Os05t0571100-02;Name=Os05t0571100-02;Locus_id=Os05g0571100;Note=Peptidase C12%2C ubiquitin carboxyl-terminal hydrolase 1 domain containing protein.;Transcript_evidence=AK104438 (DDBJ%2C Best hit);ORF_evidence=NP_001118908.1 (RefSeq);InterPro=Plant organelle RNA recognition domain (IPR021099);NIAS_FLcDNA=006-209-D12;Expression=AK104438;TENOR=Os05t0571100-02;KEGG=Os05t0571100-02
Chr05	irgsp1_rep	five_prime_UTR	28464165	28464206	.	+	.	Parent=Os05t0571100-02
Chr05	irgsp1_rep	CDS	28464207	28465736	.	+	0	Parent=Os05t0571100-02
Chr05	irgsp1_rep	three_prime_UTR	28465737	28465923	.	+	.	Parent=Os05t0571100-02
Chr05	irgsp1_rep	mRNA	28471802	28473050	.	+	.	ID=Os05t0571200-01;Name=Os05t0571200-01;Locus_id=Os05g0571200;CGSNL Gene Symbol=WRKY19;CGSNL Gene Name=WRKY GENE 19;Oryzabase Gene Symbol Synonym(s)=OsWRKY19;Oryzabase Gene Name Synonym(s)=Rice WRKY gene19;Note=Similar to WRKY transcription factor 19.;Transcript_evidence=AK108389 (DDBJ%2C Best hit);ORF_evidence=Q6IER2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);NIAS_FLcDNA=002-142-F03;Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6530;Expression=AK108389;TENOR=Os05t0571200-01;KEGG=Os05t0571200-01
Chr05	irgsp1_rep	five_prime_UTR	28471802	28471873	.	+	.	Parent=Os05t0571200-01
Chr05	irgsp1_rep	CDS	28471874	28472122	.	+	0	Parent=Os05t0571200-01
Chr05	irgsp1_rep	CDS	28472208	28472335	.	+	0	Parent=Os05t0571200-01
Chr05	irgsp1_rep	CDS	28472464	28472920	.	+	1	Parent=Os05t0571200-01
Chr05	irgsp1_rep	three_prime_UTR	28472921	28473050	.	+	.	Parent=Os05t0571200-01
Chr05	irgsp1_rep	mRNA	28476388	28477137	.	-	.	ID=Os05t0571300-01;Name=Os05t0571300-01;Locus_id=Os05g0571300;Note=Conserved hypothetical protein.;Transcript_evidence=AK111014 (DDBJ%2C Best hit);ORF_evidence=Q6ZFU3 (UniProt);NIAS_FLcDNA=002-174-G02;TENOR=Os05t0571300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	28476768	28477137	.	-	.	Parent=Os05t0571300-01
Chr05	irgsp1_rep	CDS	28476678	28476767	.	-	0	Parent=Os05t0571300-01
Chr05	irgsp1_rep	three_prime_UTR	28476388	28476677	.	-	.	Parent=Os05t0571300-01
Chr05	irgsp1_rep	mRNA	28473568	28476469	.	-	.	ID=Os05t0571300-02;Name=Os05t0571300-02;Locus_id=Os05g0571300;Note=Protein of unknown function DUF3615 domain containing protein.;Transcript_evidence=AK072262 (DDBJ%2C Best hit);ORF_evidence=A2Y7P2 (UniProt);InterPro=Protein of unknown function DUF3615 (IPR022059);NIAS_FLcDNA=J023005F03;Expression=AK072262;TENOR=Os05t0571300-02;KEGG=Os05t0571300-02
Chr05	irgsp1_rep	five_prime_UTR	28476196	28476469	.	-	.	Parent=Os05t0571300-02
Chr05	irgsp1_rep	CDS	28474765	28476195	.	-	0	Parent=Os05t0571300-02
Chr05	irgsp1_rep	CDS	28474161	28474428	.	-	0	Parent=Os05t0571300-02
Chr05	irgsp1_rep	CDS	28473774	28474069	.	-	2	Parent=Os05t0571300-02
Chr05	irgsp1_rep	three_prime_UTR	28473568	28473773	.	-	.	Parent=Os05t0571300-02
Chr05	irgsp1_rep	mRNA	28473720	28476156	.	-	.	ID=Os05t0571300-03;Name=Os05t0571300-03;Locus_id=Os05g0571300;Note=Hypothetical conserved gene.;Transcript_evidence=AK109853 (DDBJ%2C Best hit);ORF_evidence=A2Y7P2 (UniProt);InterPro=Protein of unknown function DUF3615 (IPR022059);NIAS_FLcDNA=002-148-F11;Expression=AK109853;TENOR=Os05t0571300-03;KEGG=Os05t0571300-03
Chr05	irgsp1_rep	CDS	28474765	28476156	.	-	0	Parent=Os05t0571300-03
Chr05	irgsp1_rep	CDS	28474161	28474428	.	-	0	Parent=Os05t0571300-03
Chr05	irgsp1_rep	CDS	28473774	28474069	.	-	2	Parent=Os05t0571300-03
Chr05	irgsp1_rep	three_prime_UTR	28473720	28473773	.	-	.	Parent=Os05t0571300-03
Chr05	irgsp1_rep	mRNA	28480951	28482901	.	-	.	ID=Os05t0571400-01;Name=Os05t0571400-01;Locus_id=Os05g0571400;Note=Protein of unknown function DUF3593 domain containing protein.;Transcript_evidence=AK062369 (DDBJ%2C Best hit);ORF_evidence=B8AWU3 (UniProt);InterPro=Protein of unknown function DUF3593 (IPR021995);NIAS_FLcDNA=001-102-A02;Expression=AK062369;TENOR=Os05t0571400-01;KEGG=Os05t0571400-01
Chr05	irgsp1_rep	five_prime_UTR	28482881	28482901	.	-	.	Parent=Os05t0571400-01
Chr05	irgsp1_rep	CDS	28482556	28482880	.	-	0	Parent=Os05t0571400-01
Chr05	irgsp1_rep	CDS	28481097	28481281	.	-	2	Parent=Os05t0571400-01
Chr05	irgsp1_rep	three_prime_UTR	28480951	28481096	.	-	.	Parent=Os05t0571400-01
Chr05	irgsp1_rep	mRNA	28478301	28481216	.	-	.	ID=Os05t0571400-02;Name=Os05t0571400-02;Locus_id=Os05g0571400;Note=Hypothetical conserved gene.;Transcript_evidence=AK119265 (DDBJ%2C Best hit);ORF_evidence=A2Y7P3 (UniProt);NIAS_FLcDNA=001-130-A05;Expression=AK119265;TENOR=Os05t0571400-02;KEGG=Os05t0571400-02
Chr05	irgsp1_rep	five_prime_UTR	28480424	28481216	.	-	.	Parent=Os05t0571400-02
Chr05	irgsp1_rep	CDS	28479810	28480423	.	-	0	Parent=Os05t0571400-02
Chr05	irgsp1_rep	CDS	28479330	28479756	.	-	1	Parent=Os05t0571400-02
Chr05	irgsp1_rep	three_prime_UTR	28478906	28479329	.	-	.	Parent=Os05t0571400-02
Chr05	irgsp1_rep	three_prime_UTR	28478301	28478795	.	-	.	Parent=Os05t0571400-02
Chr05	irgsp1_rep	mRNA	28487243	28488200	.	+	.	ID=Os05t0571600-01;Name=Os05t0571600-01;Locus_id=Os05g0571600;Note=Conserved hypothetical protein.;Transcript_evidence=AK240973 (DDBJ%2C Best hit);ORF_evidence=NP_001174536.1 (RefSeq);NIAS_FLcDNA=J065047I19;TENOR=Os05t0571600-01;KEGG=Os05t0571600-01
Chr05	irgsp1_rep	five_prime_UTR	28487243	28487347	.	+	.	Parent=Os05t0571600-01
Chr05	irgsp1_rep	CDS	28487348	28487854	.	+	0	Parent=Os05t0571600-01
Chr05	irgsp1_rep	three_prime_UTR	28487855	28488200	.	+	.	Parent=Os05t0571600-01
Chr05	irgsp1_rep	mRNA	28489736	28493801	.	-	.	ID=Os05t0571700-01;Name=Os05t0571700-01;Locus_id=Os05g0571700;Oryzabase Gene Symbol Synonym(s)=OsFbox282%2C Os_F0643;Oryzabase Gene Name Synonym(s)=F-box protein 282;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK102063 (DDBJ%2C Best hit);ORF_evidence=B8AWU9 (UniProt);NIAS_FLcDNA=J033082D19;Oryzabase=17062;Expression=AK102063;TENOR=Os05t0571700-01;KEGG=Os05t0571700-01
Chr05	irgsp1_rep	five_prime_UTR	28493611	28493801	.	-	.	Parent=Os05t0571700-01
Chr05	irgsp1_rep	CDS	28493532	28493610	.	-	0	Parent=Os05t0571700-01
Chr05	irgsp1_rep	CDS	28492540	28492649	.	-	2	Parent=Os05t0571700-01
Chr05	irgsp1_rep	CDS	28490660	28491505	.	-	0	Parent=Os05t0571700-01
Chr05	irgsp1_rep	CDS	28490439	28490579	.	-	0	Parent=Os05t0571700-01
Chr05	irgsp1_rep	CDS	28489983	28490360	.	-	0	Parent=Os05t0571700-01
Chr05	irgsp1_rep	three_prime_UTR	28489736	28489982	.	-	.	Parent=Os05t0571700-01
Chr05	irgsp1_rep	mRNA	28494216	28494883	.	+	.	ID=Os05t0571800-01;Name=Os05t0571800-01;Locus_id=Os05g0571800;Note=Similar to H0402C08.3 protein.;Transcript_evidence=AK063033 (DDBJ%2C Best hit);ORF_evidence=Q259J5 (UniProt);NIAS_FLcDNA=001-110-C07;Expression=AK063033;TENOR=Os05t0571800-01;KEGG=Os05t0571800-01
Chr05	irgsp1_rep	five_prime_UTR	28494216	28494252	.	+	.	Parent=Os05t0571800-01
Chr05	irgsp1_rep	CDS	28494253	28494660	.	+	0	Parent=Os05t0571800-01
Chr05	irgsp1_rep	three_prime_UTR	28494661	28494883	.	+	.	Parent=Os05t0571800-01
Chr05	irgsp1_rep	mRNA	28499327	28500571	.	-	.	ID=Os05t0572000-01;Name=Os05t0572000-01;Locus_id=Os05g0572000;RAP-DB Gene Symbol Synonym(s)=OsRPH1;RAP-DB Gene Name Synonym(s)=REDUCED PLANT HEIGHT1;CGSNL Gene Symbol=ERF52;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 52;Oryzabase Gene Symbol Synonym(s)=OsERF#052%2C OsERF052%2C OsERF52%2C AP2/EREBP#053%2C AP2/EREBP53;Oryzabase Gene Name Synonym(s)=ethylene response factor 52%2C APETALA2/ethylene-responsive element binding protein 53;Note=AP2/ERF (APETALA 2/ethylene response factor) transcription factor%2C Negative regulation of plant height%2C Blue light inhibition of leaf sheath elongation;Transcript_evidence=CT841687 (Oryza rufipogon);ORF_evidence=Q65XK9;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-binding transcription factor activity (GO:0003700);InterPro=AP2/ERF domain superfamily (IPR036955),DNA-binding domain superfamily (IPR016177),AP2/ERF domain (IPR001471);Manual Curation=June 15%2C 2020;Literature_PMID=32528516;Oryzabase=10568;TENOR=Os05t0572000-00;KEGG=Os05t0572000-00;Subcellular location=nucleus (GO:0005634)
Chr05	irgsp1_rep	five_prime_UTR	28500476	28500571	.	-	.	Parent=Os05t0572000-01
Chr05	irgsp1_rep	CDS	28499654	28500475	.	-	0	Parent=Os05t0572000-01
Chr05	irgsp1_rep	three_prime_UTR	28499327	28499653	.	-	.	Parent=Os05t0572000-01
Chr05	irgsp1_rep	mRNA	28524935	28526025	.	-	.	ID=Os05t0572700-01;Name=Os05t0572700-01;Locus_id=Os05g0572700;Oryzabase Gene Symbol Synonym(s)=OsPP2C51%2C PP2C51%2C OsPP79%2C PP79;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C51%2C protein phosphatase 2C 51%2C protein phosphatase 79;Note=Similar to protein phosphatase 2C ABI1.;Transcript_evidence=AK119929 (DDBJ%2C Best hit);ORF_evidence=B9FIF4 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=002-184-A05;Oryzabase=17924;Expression=AK119929;TENOR=Os05t0572700-01;KEGG=Os05t0572700-01
Chr05	irgsp1_rep	five_prime_UTR	28525981	28526025	.	-	.	Parent=Os05t0572700-01
Chr05	irgsp1_rep	CDS	28525213	28525980	.	-	0	Parent=Os05t0572700-01
Chr05	irgsp1_rep	three_prime_UTR	28524935	28525212	.	-	.	Parent=Os05t0572700-01
Chr05	irgsp1_rep	mRNA	28523815	28526024	.	-	.	ID=Os05t0572700-02;Name=Os05t0572700-02;Locus_id=Os05g0572700;Oryzabase Gene Symbol Synonym(s)=OsPP2C51%2C PP2C51%2C OsPP79%2C PP79;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C51%2C protein phosphatase 2C 51%2C protein phosphatase 79;Note=Similar to Protein phosphatase 2C.;Transcript_evidence=AK108969 (DDBJ%2C Best hit);ORF_evidence=NP_001151589.1 (RefSeq);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=002-153-D11;Oryzabase=17924;Expression=AK108969;TENOR=Os05t0572700-02;KEGG=Os05t0572700-02 (EC:3.1.3.16)
Chr05	irgsp1_rep	five_prime_UTR	28525981	28526024	.	-	.	Parent=Os05t0572700-02
Chr05	irgsp1_rep	CDS	28525252	28525980	.	-	0	Parent=Os05t0572700-02
Chr05	irgsp1_rep	CDS	28524370	28524475	.	-	0	Parent=Os05t0572700-02
Chr05	irgsp1_rep	CDS	28523968	28524278	.	-	2	Parent=Os05t0572700-02
Chr05	irgsp1_rep	three_prime_UTR	28523815	28523967	.	-	.	Parent=Os05t0572700-02
Chr05	irgsp1_rep	mRNA	28524022	28525589	.	+	.	ID=Os05t0572800-00;Name=Os05t0572800-00;Locus_id=Os05g0572800;Note=Hypothetical protein.;Transcript_evidence=BT086014 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0572800-00
Chr05	irgsp1_rep	CDS	28524022	28524282	.	+	0	Parent=Os05t0572800-00
Chr05	irgsp1_rep	three_prime_UTR	28524283	28524308	.	+	.	Parent=Os05t0572800-00
Chr05	irgsp1_rep	three_prime_UTR	28524401	28524540	.	+	.	Parent=Os05t0572800-00
Chr05	irgsp1_rep	three_prime_UTR	28525154	28525589	.	+	.	Parent=Os05t0572800-00
Chr05	irgsp1_rep	mRNA	28534213	28536925	.	-	.	ID=Os05t0572900-01;Name=Os05t0572900-01;Locus_id=Os05g0572900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK103180 (DDBJ%2C Best hit);ORF_evidence=B9FIF5 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033121I12;Expression=AK103180;TENOR=Os05t0572900-01;KEGG=Os05t0572900-01
Chr05	irgsp1_rep	five_prime_UTR	28536614	28536925	.	-	.	Parent=Os05t0572900-01
Chr05	irgsp1_rep	CDS	28534550	28536613	.	-	0	Parent=Os05t0572900-01
Chr05	irgsp1_rep	three_prime_UTR	28534213	28534549	.	-	.	Parent=Os05t0572900-01
Chr05	irgsp1_rep	mRNA	28539716	28543049	.	-	.	ID=Os05t0573000-01;Name=Os05t0573000-01;Locus_id=Os05g0573000;Note=Conserved hypothetical protein.;Transcript_evidence=AK066560 (DDBJ%2C Best hit);ORF_evidence=B9FIF6 (UniProt);NIAS_FLcDNA=J013072M24;Expression=AK066560;TENOR=Os05t0573000-01;KEGG=Os05t0573000-01
Chr05	irgsp1_rep	five_prime_UTR	28543015	28543049	.	-	.	Parent=Os05t0573000-01
Chr05	irgsp1_rep	CDS	28542712	28543014	.	-	0	Parent=Os05t0573000-01
Chr05	irgsp1_rep	CDS	28541849	28542214	.	-	0	Parent=Os05t0573000-01
Chr05	irgsp1_rep	three_prime_UTR	28539716	28541848	.	-	.	Parent=Os05t0573000-01
Chr05	irgsp1_rep	mRNA	28547571	28551291	.	+	.	ID=Os05t0573200-00;Name=Os05t0573200-00;Locus_id=Os05g0573200;CGSNL Gene Symbol=IDH;CGSNL Gene Name=ISOCITRATE DEHYDROGENASE;Oryzabase Gene Symbol Synonym(s)=OsIDH;Oryzabase Gene Name Synonym(s)=isocitrate dehydrogenase;Note=Similar to Isocitrate dehydrogenase (Fragment).;Transcript_evidence=AF155334 (DDBJ%2C Best hit);ORF_evidence=A2Y7Q3 (UniProt);GO=Biological Process: isocitrate metabolic process (GO:0006102),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: isocitrate dehydrogenase (NADP+) activity (GO:0004450),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: NAD binding (GO:0051287);InterPro=Isocitrate dehydrogenase NADP-dependent%2C eukaryotic-type (IPR004790),Isocitrate/isopropylmalate dehydrogenase%2C conserved site (IPR019818),Isopropylmalate dehydrogenase-like domain (IPR024084);Oryzabase=20223;Expression=AF155334;TENOR=Os05t0573200-00;KEGG=Os05t0573200-00 (EC:1.1.1.42)
Chr05	irgsp1_rep	five_prime_UTR	28547571	28547653	.	+	.	Parent=Os05t0573200-00
Chr05	irgsp1_rep	CDS	28547654	28547702	.	+	0	Parent=Os05t0573200-00
Chr05	irgsp1_rep	CDS	28548025	28548068	.	+	2	Parent=Os05t0573200-00
Chr05	irgsp1_rep	CDS	28548178	28548287	.	+	0	Parent=Os05t0573200-00
Chr05	irgsp1_rep	CDS	28548576	28548613	.	+	1	Parent=Os05t0573200-00
Chr05	irgsp1_rep	CDS	28548697	28548774	.	+	2	Parent=Os05t0573200-00
Chr05	irgsp1_rep	CDS	28548853	28548906	.	+	2	Parent=Os05t0573200-00
Chr05	irgsp1_rep	CDS	28548989	28549090	.	+	2	Parent=Os05t0573200-00
Chr05	irgsp1_rep	CDS	28549478	28549563	.	+	2	Parent=Os05t0573200-00
Chr05	irgsp1_rep	CDS	28549653	28549756	.	+	0	Parent=Os05t0573200-00
Chr05	irgsp1_rep	CDS	28549868	28549936	.	+	1	Parent=Os05t0573200-00
Chr05	irgsp1_rep	CDS	28550015	28550130	.	+	1	Parent=Os05t0573200-00
Chr05	irgsp1_rep	CDS	28550275	28550309	.	+	2	Parent=Os05t0573200-00
Chr05	irgsp1_rep	CDS	28550478	28550620	.	+	0	Parent=Os05t0573200-00
Chr05	irgsp1_rep	CDS	28550799	28550924	.	+	1	Parent=Os05t0573200-00
Chr05	irgsp1_rep	CDS	28551026	28551110	.	+	1	Parent=Os05t0573200-00
Chr05	irgsp1_rep	three_prime_UTR	28551111	28551291	.	+	.	Parent=Os05t0573200-00
Chr05	irgsp1_rep	mRNA	28547604	28551076	.	-	.	ID=Os05t0573250-00;Name=Os05t0573250-00;Locus_id=Os05g0573250;Note=Non-protein coding transcript.;Transcript_evidence=BT016882 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0573250-00
Chr05	irgsp1_rep	exon	28551007	28551076	.	-	.	Parent=Os05t0573250-00
Chr05	irgsp1_rep	exon	28550783	28550904	.	-	.	Parent=Os05t0573250-00
Chr05	irgsp1_rep	exon	28550455	28550609	.	-	.	Parent=Os05t0573250-00
Chr05	irgsp1_rep	exon	28550000	28550146	.	-	.	Parent=Os05t0573250-00
Chr05	irgsp1_rep	exon	28549864	28549923	.	-	.	Parent=Os05t0573250-00
Chr05	irgsp1_rep	exon	28549568	28549752	.	-	.	Parent=Os05t0573250-00
Chr05	irgsp1_rep	exon	28548960	28549099	.	-	.	Parent=Os05t0573250-00
Chr05	irgsp1_rep	exon	28548671	28548797	.	-	.	Parent=Os05t0573250-00
Chr05	irgsp1_rep	exon	28548167	28548301	.	-	.	Parent=Os05t0573250-00
Chr05	irgsp1_rep	exon	28547604	28547734	.	-	.	Parent=Os05t0573250-00
Chr05	irgsp1_rep	mRNA	28551323	28557309	.	-	.	ID=Os05t0573300-01;Name=Os05t0573300-01;Locus_id=Os05g0573300;Note=Similar to CTP synthase 1 (EC 6.3.4.2) (UTP--ammonia ligase 1) (CTP synthetase 1).;Transcript_evidence=AK070411 (DDBJ%2C Best hit);ORF_evidence=NP_001148101.1 (RefSeq);GO=Biological Process: pyrimidine nucleotide biosynthetic process (GO:0006221),Molecular Function: CTP synthase activity (GO:0003883);InterPro=CTP synthase (IPR004468),CTP synthase%2C N-terminal (IPR017456),Glutamine amidotransferase type 1 (IPR017926);NIAS_FLcDNA=J023053C07;Expression=AK070411;TENOR=Os05t0573300-01;KEGG=Os05t0573300-01 (EC:6.3.4.2)
Chr05	irgsp1_rep	five_prime_UTR	28557120	28557309	.	-	.	Parent=Os05t0573300-01
Chr05	irgsp1_rep	CDS	28557002	28557119	.	-	0	Parent=Os05t0573300-01
Chr05	irgsp1_rep	CDS	28555959	28556038	.	-	2	Parent=Os05t0573300-01
Chr05	irgsp1_rep	CDS	28555554	28555640	.	-	0	Parent=Os05t0573300-01
Chr05	irgsp1_rep	CDS	28555101	28555151	.	-	0	Parent=Os05t0573300-01
Chr05	irgsp1_rep	CDS	28554885	28555002	.	-	0	Parent=Os05t0573300-01
Chr05	irgsp1_rep	CDS	28554651	28554707	.	-	2	Parent=Os05t0573300-01
Chr05	irgsp1_rep	CDS	28554488	28554552	.	-	2	Parent=Os05t0573300-01
Chr05	irgsp1_rep	CDS	28554303	28554386	.	-	0	Parent=Os05t0573300-01
Chr05	irgsp1_rep	CDS	28554140	28554190	.	-	0	Parent=Os05t0573300-01
Chr05	irgsp1_rep	CDS	28553994	28554056	.	-	0	Parent=Os05t0573300-01
Chr05	irgsp1_rep	CDS	28553865	28553911	.	-	0	Parent=Os05t0573300-01
Chr05	irgsp1_rep	CDS	28553697	28553775	.	-	1	Parent=Os05t0573300-01
Chr05	irgsp1_rep	CDS	28553533	28553595	.	-	0	Parent=Os05t0573300-01
Chr05	irgsp1_rep	CDS	28553284	28553373	.	-	0	Parent=Os05t0573300-01
Chr05	irgsp1_rep	CDS	28553145	28553183	.	-	0	Parent=Os05t0573300-01
Chr05	irgsp1_rep	CDS	28552839	28553066	.	-	0	Parent=Os05t0573300-01
Chr05	irgsp1_rep	CDS	28552660	28552745	.	-	0	Parent=Os05t0573300-01
Chr05	irgsp1_rep	CDS	28552512	28552560	.	-	1	Parent=Os05t0573300-01
Chr05	irgsp1_rep	CDS	28552345	28552425	.	-	0	Parent=Os05t0573300-01
Chr05	irgsp1_rep	CDS	28552167	28552260	.	-	0	Parent=Os05t0573300-01
Chr05	irgsp1_rep	CDS	28551771	28551967	.	-	2	Parent=Os05t0573300-01
Chr05	irgsp1_rep	three_prime_UTR	28551323	28551770	.	-	.	Parent=Os05t0573300-01
Chr05	irgsp1_rep	mRNA	28552156	28557157	.	+	.	ID=Os05t0573400-00;Name=Os05t0573400-00;Locus_id=Os05g0573400;Note=Hypothetical protein.;Transcript_evidence=tplb0056h06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0573400-00
Chr05	irgsp1_rep	five_prime_UTR	28552156	28552243	.	+	.	Parent=Os05t0573400-00
Chr05	irgsp1_rep	five_prime_UTR	28552330	28552448	.	+	.	Parent=Os05t0573400-00
Chr05	irgsp1_rep	five_prime_UTR	28552632	28552744	.	+	.	Parent=Os05t0573400-00
Chr05	irgsp1_rep	five_prime_UTR	28552838	28553059	.	+	.	Parent=Os05t0573400-00
Chr05	irgsp1_rep	five_prime_UTR	28553246	28553394	.	+	.	Parent=Os05t0573400-00
Chr05	irgsp1_rep	five_prime_UTR	28553552	28553612	.	+	.	Parent=Os05t0573400-00
Chr05	irgsp1_rep	five_prime_UTR	28553816	28553965	.	+	.	Parent=Os05t0573400-00
Chr05	irgsp1_rep	five_prime_UTR	28554131	28554186	.	+	.	Parent=Os05t0573400-00
Chr05	irgsp1_rep	five_prime_UTR	28554300	28554381	.	+	.	Parent=Os05t0573400-00
Chr05	irgsp1_rep	five_prime_UTR	28554485	28554589	.	+	.	Parent=Os05t0573400-00
Chr05	irgsp1_rep	CDS	28554590	28554594	.	+	0	Parent=Os05t0573400-00
Chr05	irgsp1_rep	CDS	28554870	28554995	.	+	1	Parent=Os05t0573400-00
Chr05	irgsp1_rep	CDS	28555502	28555634	.	+	1	Parent=Os05t0573400-00
Chr05	irgsp1_rep	CDS	28555952	28556029	.	+	0	Parent=Os05t0573400-00
Chr05	irgsp1_rep	three_prime_UTR	28556030	28556030	.	+	.	Parent=Os05t0573400-00
Chr05	irgsp1_rep	three_prime_UTR	28556998	28557157	.	+	.	Parent=Os05t0573400-00
Chr05	irgsp1_rep	mRNA	28572426	28575154	.	+	.	ID=Os05t0573500-01;Name=Os05t0573500-01;Locus_id=Os05g0573500;RAP-DB Gene Symbol Synonym(s)=HAP3C%2C OsHAP3C%2C OsNF-YB-4%2C NFYB4;RAP-DB Gene Name Synonym(s)=HAP3C SUBUNIT OF CCAAT-BOX BINDING COMPLEX%2C rice HAP3C%2C Nuclear transcription factor Y subunit B-4%2C Transcriptional activator HAP3C;CGSNL Gene Symbol=HAP3B;CGSNL Gene Name=HAP3B SUBUNIT OF CCAAT-BOX BINDING COMPLEX;Oryzabase Gene Symbol Synonym(s)=OsHAP3B%2C OsNF-YB-3%2C NFYB3%2C OsNF-YB4%2C NF-YB4%2C NFYB4%2C OsHAP3C%2C HAP3C;Oryzabase Gene Name Synonym(s)=rice HAP3B%2C Nuclear transcription factor Y subunit B-3%2C Transcriptional activator HAP3B%2C NUCLEAR FACTOR-Y subunit B4%2C NUCLEAR FACTOR-Y subunit NF-YB4%2C NF-YB subunit 4%2C NF-YB family 4;Note=CCAAT-box binding transcription factor%2C Chloroplast biogenesis;Transcript_evidence=AB095440;ORF_evidence=Q65XK1,Q0DFS6;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein heterodimerization activity (GO:0046982),Cellular Component: intracellular (GO:0005622),Cellular Component: nucleus (GO:0005634);InterPro=Histone-fold (IPR009072),Transcription factor CBF/NF-Y/archaeal histone (IPR003958),Transcription factor%2C NFYB/HAP3%2C conserved site (IPR003956);Manual Curation=January 7%2C 2010;Literature_PMID=14617083,18193457;Oryzabase=3124;TENOR=Os05t0573500-00
Chr05	irgsp1_rep	five_prime_UTR	28572426	28572566	.	+	.	Parent=Os05t0573500-01
Chr05	irgsp1_rep	five_prime_UTR	28572644	28572645	.	+	.	Parent=Os05t0573500-01
Chr05	irgsp1_rep	CDS	28572646	28572848	.	+	0	Parent=Os05t0573500-01
Chr05	irgsp1_rep	CDS	28573005	28573134	.	+	1	Parent=Os05t0573500-01
Chr05	irgsp1_rep	CDS	28574014	28574019	.	+	0	Parent=Os05t0573500-01
Chr05	irgsp1_rep	CDS	28574100	28574177	.	+	0	Parent=Os05t0573500-01
Chr05	irgsp1_rep	CDS	28574861	28574875	.	+	0	Parent=Os05t0573500-01
Chr05	irgsp1_rep	three_prime_UTR	28574876	28575154	.	+	.	Parent=Os05t0573500-01
Chr05	irgsp1_rep	mRNA	28576652	28576859	.	+	.	ID=Os05t0573550-01;Name=Os05t0573550-01;Locus_id=Os05g0573550;Note=Non-protein coding transcript.;Transcript_evidence=AK287647 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065091A16;TENOR=Os05t0573550-01
Chr05	irgsp1_rep	exon	28576652	28576859	.	+	.	Parent=Os05t0573550-01
Chr05	irgsp1_rep	mRNA	28577905	28578556	.	-	.	ID=Os05t0573600-00;Name=Os05t0573600-00;Locus_id=Os05g0573600;Note=Similar to predicted protein.;Transcript_evidence=EU976279 (DDBJ);ORF_evidence=B9FIF8 (UniProt);InterPro=Protein of unknown function DUF538 (IPR007493);TENOR=Os05t0573600-00;KEGG=Os05t0573600-00
Chr05	irgsp1_rep	five_prime_UTR	28578482	28578556	.	-	.	Parent=Os05t0573600-00
Chr05	irgsp1_rep	CDS	28578065	28578481	.	-	0	Parent=Os05t0573600-00
Chr05	irgsp1_rep	three_prime_UTR	28577905	28578064	.	-	.	Parent=Os05t0573600-00
Chr05	irgsp1_rep	mRNA	28579296	28582615	.	-	.	ID=Os05t0573700-01;Name=Os05t0573700-01;Locus_id=Os05g0573700;Note=Similar to Ketol-acid reductoisomerase%2C chloroplast precursor (EC 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase).;Transcript_evidence=AK065295 (DDBJ%2C Best hit);ORF_evidence=B6TF69 (UniProt);GO=Biological Process: cellular amino acid biosynthetic process (GO:0008652),Biological Process: branched chain family amino acid biosynthetic process (GO:0009082),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ketol-acid reductoisomerase activity (GO:0004455),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: coenzyme binding (GO:0050662);InterPro=Acetohydroxy acid isomeroreductase C-terminal (IPR000506),6-phosphogluconate dehydrogenase%2C C-terminal-like (IPR008927),Acetohydroxy acid isomeroreductase (IPR013023),Acetohydroxy acid isomeroreductase%2C catalytic (IPR013116),Dehydrogenase%2C multihelical (IPR013328),NAD(P)-binding domain (IPR016040),Ketol-acid reductoisomerase (IPR016206);NIAS_FLcDNA=J013002N13;Expression=AK065295;TENOR=Os05t0573700-01;KEGG=Os05t0573700-01 (EC:1.1.1.86)
Chr05	irgsp1_rep	five_prime_UTR	28582552	28582615	.	-	.	Parent=Os05t0573700-01
Chr05	irgsp1_rep	CDS	28582291	28582551	.	-	0	Parent=Os05t0573700-01
Chr05	irgsp1_rep	CDS	28582096	28582188	.	-	0	Parent=Os05t0573700-01
Chr05	irgsp1_rep	CDS	28581759	28581824	.	-	0	Parent=Os05t0573700-01
Chr05	irgsp1_rep	CDS	28581285	28581425	.	-	0	Parent=Os05t0573700-01
Chr05	irgsp1_rep	CDS	28580817	28581044	.	-	0	Parent=Os05t0573700-01
Chr05	irgsp1_rep	CDS	28580614	28580731	.	-	0	Parent=Os05t0573700-01
Chr05	irgsp1_rep	CDS	28580408	28580547	.	-	2	Parent=Os05t0573700-01
Chr05	irgsp1_rep	CDS	28580170	28580337	.	-	0	Parent=Os05t0573700-01
Chr05	irgsp1_rep	CDS	28579900	28580055	.	-	0	Parent=Os05t0573700-01
Chr05	irgsp1_rep	CDS	28579418	28579783	.	-	0	Parent=Os05t0573700-01
Chr05	irgsp1_rep	three_prime_UTR	28579296	28579417	.	-	.	Parent=Os05t0573700-01
Chr05	irgsp1_rep	mRNA	28579255	28580858	.	-	.	ID=Os05t0573700-02;Name=Os05t0573700-02;Locus_id=Os05g0573700;Note=Similar to Ketol-acid reductoisomerase.;Transcript_evidence=AK061892 (DDBJ%2C Best hit);ORF_evidence=B6TF69 (UniProt);GO=Biological Process: branched chain family amino acid biosynthetic process (GO:0009082),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: ketol-acid reductoisomerase activity (GO:0004455),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: coenzyme binding (GO:0050662);InterPro=Acetohydroxy acid isomeroreductase C-terminal (IPR000506),6-phosphogluconate dehydrogenase%2C C-terminal-like (IPR008927),Acetohydroxy acid isomeroreductase (IPR013023),Dehydrogenase%2C multihelical (IPR013328);NIAS_FLcDNA=001-041-G05;Expression=AK061892;TENOR=Os05t0573700-02;KEGG=Os05t0573700-02 (EC:1.1.1.86)
Chr05	irgsp1_rep	CDS	28580817	28580858	.	-	0	Parent=Os05t0573700-02
Chr05	irgsp1_rep	CDS	28580614	28580731	.	-	0	Parent=Os05t0573700-02
Chr05	irgsp1_rep	CDS	28580408	28580547	.	-	2	Parent=Os05t0573700-02
Chr05	irgsp1_rep	CDS	28580170	28580337	.	-	0	Parent=Os05t0573700-02
Chr05	irgsp1_rep	CDS	28579900	28580055	.	-	0	Parent=Os05t0573700-02
Chr05	irgsp1_rep	CDS	28579418	28579783	.	-	0	Parent=Os05t0573700-02
Chr05	irgsp1_rep	three_prime_UTR	28579255	28579417	.	-	.	Parent=Os05t0573700-02
Chr05	irgsp1_rep	mRNA	28585627	28588880	.	+	.	ID=Os05t0573800-00;Name=Os05t0573800-00;Locus_id=Os05g0573800;Note=Hypothetical conserved gene.;Transcript_evidence=AK369674 (DDBJ);ORF_evidence=Q6F355 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);TENOR=Os05t0573800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	28585627	28585660	.	+	.	Parent=Os05t0573800-00
Chr05	irgsp1_rep	CDS	28585661	28585929	.	+	0	Parent=Os05t0573800-00
Chr05	irgsp1_rep	CDS	28588013	28588880	.	+	1	Parent=Os05t0573800-00
Chr05	irgsp1_rep	mRNA	28589103	28592602	.	-	.	ID=Os05t0573900-01;Name=Os05t0573900-01;Locus_id=Os05g0573900;Note=Similar to predicted protein.;Transcript_evidence=AK242382 (DDBJ%2C Best hit);ORF_evidence=NP_193591.2 (RefSeq);NIAS_FLcDNA=J080044M11;TENOR=Os05t0573900-01;KEGG=Os05t0573900-01
Chr05	irgsp1_rep	CDS	28592519	28592602	.	-	0	Parent=Os05t0573900-01
Chr05	irgsp1_rep	CDS	28591049	28591180	.	-	0	Parent=Os05t0573900-01
Chr05	irgsp1_rep	CDS	28590766	28590947	.	-	0	Parent=Os05t0573900-01
Chr05	irgsp1_rep	CDS	28590548	28590659	.	-	1	Parent=Os05t0573900-01
Chr05	irgsp1_rep	CDS	28589495	28589629	.	-	0	Parent=Os05t0573900-01
Chr05	irgsp1_rep	CDS	28589216	28589347	.	-	0	Parent=Os05t0573900-01
Chr05	irgsp1_rep	three_prime_UTR	28589103	28589215	.	-	.	Parent=Os05t0573900-01
Chr05	irgsp1_rep	mRNA	28597581	28598820	.	-	.	ID=Os05t0573950-00;Name=Os05t0573950-00;Locus_id=Os05g0573950;Note=Hypothetical gene.;Transcript_evidence=EU969884 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0573950-00
Chr05	irgsp1_rep	five_prime_UTR	28598366	28598820	.	-	.	Parent=Os05t0573950-00
Chr05	irgsp1_rep	CDS	28598235	28598365	.	-	0	Parent=Os05t0573950-00
Chr05	irgsp1_rep	CDS	28597581	28598167	.	-	1	Parent=Os05t0573950-00
Chr05	irgsp1_rep	mRNA	28597575	28598915	.	+	.	ID=Os05t0574000-00;Name=Os05t0574000-00;Locus_id=Os05g0574000;Note=Lipase%2C class 3 family protein.;Transcript_evidence=EU964759 (DDBJ);ORF_evidence=NP_001149813.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921);TENOR=Os05t0574000-00;KEGG=Os05t0574000-00
Chr05	irgsp1_rep	five_prime_UTR	28597575	28597575	.	+	.	Parent=Os05t0574000-00
Chr05	irgsp1_rep	CDS	28597576	28598178	.	+	0	Parent=Os05t0574000-00
Chr05	irgsp1_rep	CDS	28598253	28598885	.	+	0	Parent=Os05t0574000-00
Chr05	irgsp1_rep	three_prime_UTR	28598886	28598915	.	+	.	Parent=Os05t0574000-00
Chr05	irgsp1_rep	mRNA	28598933	28603266	.	-	.	ID=Os05t0574100-01;Name=Os05t0574100-01;Locus_id=Os05g0574100;Oryzabase Gene Name Synonym(s)=class III lipase;Note=Lipase%2C class 3 family protein.;Transcript_evidence=AK106699 (DDBJ%2C Best hit);ORF_evidence=A2Y7R2 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921);NIAS_FLcDNA=002-114-E01;Oryzabase=23068;Expression=AK106699;TENOR=Os05t0574100-01;KEGG=Os05t0574100-01
Chr05	irgsp1_rep	five_prime_UTR	28603183	28603266	.	-	.	Parent=Os05t0574100-01
Chr05	irgsp1_rep	CDS	28602568	28603182	.	-	0	Parent=Os05t0574100-01
Chr05	irgsp1_rep	CDS	28599151	28599759	.	-	0	Parent=Os05t0574100-01
Chr05	irgsp1_rep	three_prime_UTR	28598933	28599150	.	-	.	Parent=Os05t0574100-01
Chr05	irgsp1_rep	mRNA	28599201	28603203	.	+	.	ID=Os05t0574200-00;Name=Os05t0574200-00;Locus_id=Os05g0574200;Note=Hypothetical protein.;Transcript_evidence=EU969884 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0574200-00
Chr05	irgsp1_rep	five_prime_UTR	28599201	28599466	.	+	.	Parent=Os05t0574200-00
Chr05	irgsp1_rep	CDS	28599467	28599756	.	+	0	Parent=Os05t0574200-00
Chr05	irgsp1_rep	CDS	28602565	28602916	.	+	1	Parent=Os05t0574200-00
Chr05	irgsp1_rep	three_prime_UTR	28602917	28603203	.	+	.	Parent=Os05t0574200-00
Chr05	irgsp1_rep	mRNA	28611981	28612666	.	+	.	ID=Os05t0574300-00;Name=Os05t0574300-00;Locus_id=Os05g0574300;Note=Similar to Histone H2B.2.;Transcript_evidence=CT828267 (DDBJ%2C Best hit);ORF_evidence=B9FIG2 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H2B (IPR000558),Histone core (IPR007125),Histone-fold (IPR009072);TENOR=Os05t0574300-00;KEGG=Os05t0574300-00
Chr05	irgsp1_rep	five_prime_UTR	28611981	28612032	.	+	.	Parent=Os05t0574300-00
Chr05	irgsp1_rep	CDS	28612033	28612491	.	+	0	Parent=Os05t0574300-00
Chr05	irgsp1_rep	three_prime_UTR	28612492	28612666	.	+	.	Parent=Os05t0574300-00
Chr05	irgsp1_rep	mRNA	28617700	28621468	.	-	.	ID=Os05t0574400-01;Name=Os05t0574400-01;Locus_id=Os05g0574400;Note=Similar to Malate dehydrogenase.;Transcript_evidence=AK073698 (DDBJ%2C Best hit);ORF_evidence=A2Y7R4 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: malate metabolic process (GO:0006108),Biological Process: cellular carbohydrate metabolic process (GO:0044262),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: malate dehydrogenase activity (GO:0016615),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: L-malate dehydrogenase activity (GO:0030060);InterPro=Lactate/malate dehydrogenase%2C N-terminal (IPR001236),Malate dehydrogenase%2C active site (IPR001252),L-lactate/malate dehydrogenase (IPR001557),Malate dehydrogenase%2C type 1 (IPR010097),Lactate dehydrogenase/glycoside hydrolase%2C family 4%2C C-terminal (IPR015955),NAD(P)-binding domain (IPR016040),Lactate/malate dehydrogenase%2C C-terminal (IPR022383);NIAS_FLcDNA=J033057I02;Expression=AK073698;TENOR=Os05t0574400-01;KEGG=Os05t0574400-01 (EC:1.1.1.37)
Chr05	irgsp1_rep	five_prime_UTR	28621416	28621468	.	-	.	Parent=Os05t0574400-01
Chr05	irgsp1_rep	CDS	28621182	28621415	.	-	0	Parent=Os05t0574400-01
Chr05	irgsp1_rep	CDS	28620920	28621093	.	-	0	Parent=Os05t0574400-01
Chr05	irgsp1_rep	CDS	28620193	28620361	.	-	0	Parent=Os05t0574400-01
Chr05	irgsp1_rep	CDS	28620009	28620070	.	-	2	Parent=Os05t0574400-01
Chr05	irgsp1_rep	CDS	28619541	28619665	.	-	0	Parent=Os05t0574400-01
Chr05	irgsp1_rep	CDS	28618551	28618668	.	-	1	Parent=Os05t0574400-01
Chr05	irgsp1_rep	CDS	28617923	28618063	.	-	0	Parent=Os05t0574400-01
Chr05	irgsp1_rep	three_prime_UTR	28617700	28617922	.	-	.	Parent=Os05t0574400-01
Chr05	irgsp1_rep	mRNA	28622492	28624739	.	-	.	ID=Os05t0574500-01;Name=Os05t0574500-01;Locus_id=Os05g0574500;RAP-DB Gene Symbol Synonym(s)=OsRAN2;RAP-DB Gene Name Synonym(s)=Ras-like nuclear GTPase 2%2C Ras-related nuclear protein 2;Oryzabase Gene Symbol Synonym(s)=OsRAN2%2C RAN2;Oryzabase Gene Name Synonym(s)=Spi-1 protein%2C Ran GTPase 2%2C Ras-like nuclear GTPase 2%2C Ras-related nuclear protein 2;Note=Ras-like nuclear GTPase%2C Regulation of cell division during cold stress%2C Cold tolerance%2C Abiotic stress response;Transcript_evidence=AK121699,AK061714,AK098889;ORF_evidence=Q7GD79;GO=Biological Process: nucleocytoplasmic transport (GO:0006913),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),Small GTPase (IPR001806),Ran GTPase (IPR002041),Small GTP-binding protein domain (IPR005225);NIAS_FLcDNA=J033073D17,001-037-H05,J013001L15;Manual Curation=October 22%2C 2020;Literature_PMID=20825577,20018899;Oryzabase=17710;TENOR=Os05t0574500-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=nucleus (GO:0005634) [mainly] [interphase],cytoplasm (GO:0005737) [interphase],spindle (GO:0005819) [mitotic phase],tubulin complex (GO:0045298) [mitotic phase]
Chr05	irgsp1_rep	five_prime_UTR	28624646	28624739	.	-	.	Parent=Os05t0574500-01
Chr05	irgsp1_rep	CDS	28624643	28624645	.	-	0	Parent=Os05t0574500-01
Chr05	irgsp1_rep	CDS	28624481	28624550	.	-	0	Parent=Os05t0574500-01
Chr05	irgsp1_rep	CDS	28623787	28623843	.	-	2	Parent=Os05t0574500-01
Chr05	irgsp1_rep	CDS	28623584	28623701	.	-	2	Parent=Os05t0574500-01
Chr05	irgsp1_rep	CDS	28623377	28623466	.	-	1	Parent=Os05t0574500-01
Chr05	irgsp1_rep	CDS	28623115	28623294	.	-	1	Parent=Os05t0574500-01
Chr05	irgsp1_rep	CDS	28622930	28623007	.	-	1	Parent=Os05t0574500-01
Chr05	irgsp1_rep	CDS	28622762	28622831	.	-	1	Parent=Os05t0574500-01
Chr05	irgsp1_rep	three_prime_UTR	28622492	28622761	.	-	.	Parent=Os05t0574500-01
Chr05	irgsp1_rep	mRNA	28622588	28624551	.	+	.	ID=Os05t0574550-00;Name=Os05t0574550-00;Locus_id=Os05g0574550;Note=Hypothetical gene.;Transcript_evidence=BT016258 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0574550-00;KEGG=Os05t0574550-00
Chr05	irgsp1_rep	five_prime_UTR	28622588	28622830	.	+	.	Parent=Os05t0574550-00
Chr05	irgsp1_rep	five_prime_UTR	28622929	28622950	.	+	.	Parent=Os05t0574550-00
Chr05	irgsp1_rep	CDS	28622951	28622997	.	+	0	Parent=Os05t0574550-00
Chr05	irgsp1_rep	CDS	28623104	28623302	.	+	1	Parent=Os05t0574550-00
Chr05	irgsp1_rep	CDS	28623386	28623415	.	+	0	Parent=Os05t0574550-00
Chr05	irgsp1_rep	three_prime_UTR	28623416	28623466	.	+	.	Parent=Os05t0574550-00
Chr05	irgsp1_rep	three_prime_UTR	28623584	28623697	.	+	.	Parent=Os05t0574550-00
Chr05	irgsp1_rep	three_prime_UTR	28623780	28623833	.	+	.	Parent=Os05t0574550-00
Chr05	irgsp1_rep	three_prime_UTR	28624468	28624551	.	+	.	Parent=Os05t0574550-00
Chr05	irgsp1_rep	mRNA	28625224	28627550	.	-	.	ID=Os05t0574600-01;Name=Os05t0574600-01;Locus_id=Os05g0574600;Oryzabase Gene Symbol Synonym(s)=OsCHS%2C FAE%2C OsFAE1;Oryzabase Gene Name Synonym(s)=Chalcone Synthase%2C FATTY ACID ELONGATION1%2C fatty acid elongase 1;Note=Similar to 3-ketoacyl-CoA synthase.;Transcript_evidence=AK070754 (DDBJ%2C Best hit);ORF_evidence=A2Y7R6 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: metabolic process (GO:0008152),Biological Process: lipid biosynthetic process (GO:0008610),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Very-long-chain 3-ketoacyl-CoA synthase (IPR012392),FAE1/Type III polyketide synthase-like protein (IPR013601),3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (IPR013747),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);NIAS_FLcDNA=J023067B12;Oryzabase=13561;TENOR=Os05t0574600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	28627287	28627550	.	-	.	Parent=Os05t0574600-01
Chr05	irgsp1_rep	five_prime_UTR	28626998	28627191	.	-	.	Parent=Os05t0574600-01
Chr05	irgsp1_rep	CDS	28625435	28626997	.	-	0	Parent=Os05t0574600-01
Chr05	irgsp1_rep	three_prime_UTR	28625224	28625434	.	-	.	Parent=Os05t0574600-01
Chr05	irgsp1_rep	mRNA	28628860	28632192	.	-	.	ID=Os05t0574700-01;Name=Os05t0574700-01;Locus_id=Os05g0574700;Note=Similar to cDNA clone:002-182-C01%2C full insert sequence.;Transcript_evidence=AK108682 (DDBJ%2C Best hit);ORF_evidence=B7F3P2 (UniProt);NIAS_FLcDNA=002-149-B07;Expression=AK108682;TENOR=Os05t0574700-01;KEGG=Os05t0574700-01
Chr05	irgsp1_rep	five_prime_UTR	28632152	28632192	.	-	.	Parent=Os05t0574700-01
Chr05	irgsp1_rep	CDS	28631958	28632151	.	-	0	Parent=Os05t0574700-01
Chr05	irgsp1_rep	CDS	28630576	28630618	.	-	1	Parent=Os05t0574700-01
Chr05	irgsp1_rep	CDS	28630402	28630494	.	-	0	Parent=Os05t0574700-01
Chr05	irgsp1_rep	CDS	28630240	28630302	.	-	0	Parent=Os05t0574700-01
Chr05	irgsp1_rep	CDS	28630059	28630154	.	-	0	Parent=Os05t0574700-01
Chr05	irgsp1_rep	CDS	28629899	28629976	.	-	0	Parent=Os05t0574700-01
Chr05	irgsp1_rep	CDS	28629739	28629828	.	-	0	Parent=Os05t0574700-01
Chr05	irgsp1_rep	three_prime_UTR	28629180	28629738	.	-	.	Parent=Os05t0574700-01
Chr05	irgsp1_rep	three_prime_UTR	28628860	28629104	.	-	.	Parent=Os05t0574700-01
Chr05	irgsp1_rep	mRNA	28629467	28632172	.	-	.	ID=Os05t0574700-02;Name=Os05t0574700-02;Locus_id=Os05g0574700;Note=Similar to predicted protein.;Transcript_evidence=AK111387 (DDBJ%2C Best hit);ORF_evidence=B8AWV6 (UniProt);NIAS_FLcDNA=002-182-C01;Expression=AK111387;TENOR=Os05t0574700-02;KEGG=Os05t0574700-02
Chr05	irgsp1_rep	five_prime_UTR	28632152	28632172	.	-	.	Parent=Os05t0574700-02
Chr05	irgsp1_rep	CDS	28631958	28632151	.	-	0	Parent=Os05t0574700-02
Chr05	irgsp1_rep	CDS	28630576	28630618	.	-	1	Parent=Os05t0574700-02
Chr05	irgsp1_rep	CDS	28630390	28630494	.	-	0	Parent=Os05t0574700-02
Chr05	irgsp1_rep	three_prime_UTR	28629899	28630389	.	-	.	Parent=Os05t0574700-02
Chr05	irgsp1_rep	three_prime_UTR	28629467	28629828	.	-	.	Parent=Os05t0574700-02
Chr05	irgsp1_rep	mRNA	28631947	28632494	.	+	.	ID=Os05t0574750-00;Name=Os05t0574750-00;Locus_id=Os05g0574750;Note=Non-protein coding transcript.;Transcript_evidence=CT834750 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os05t0574750-00
Chr05	irgsp1_rep	exon	28631947	28632494	.	+	.	Parent=Os05t0574750-00
Chr05	irgsp1_rep	mRNA	28632991	28636150	.	+	.	ID=Os05t0574800-00;Name=Os05t0574800-00;Locus_id=Os05g0574800;CGSNL Gene Symbol=PPR6;CGSNL Gene Name=PENTATRICOPEPTIDE REPEAT PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsPPR6;Oryzabase Gene Name Synonym(s)=pentatricopeptide repeat protein 6;Note=Hypothetical conserved gene.;Transcript_evidence=tplb0008d01 (Wheat FLcDNA);ORF_evidence=Q6F363 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);Oryzabase=21911;TENOR=Os05t0574800-00;KEGG=Os05t0574800-00
Chr05	irgsp1_rep	five_prime_UTR	28632991	28633061	.	+	.	Parent=Os05t0574800-00
Chr05	irgsp1_rep	CDS	28633062	28635674	.	+	0	Parent=Os05t0574800-00
Chr05	irgsp1_rep	three_prime_UTR	28635675	28635992	.	+	.	Parent=Os05t0574800-00
Chr05	irgsp1_rep	three_prime_UTR	28636077	28636150	.	+	.	Parent=Os05t0574800-00
Chr05	irgsp1_rep	mRNA	28640262	28641986	.	+	.	ID=Os05t0574900-01;Name=Os05t0574900-01;Locus_id=Os05g0574900;CGSNL Gene Symbol=SLRL2;CGSNL Gene Name=SLENDER RICE LIKE 2;Oryzabase Gene Symbol Synonym(s)=OsSLRL2%2C OsGRAS-30%2C OsGRAS30%2C GRAS-30%2C GRAS30;Oryzabase Gene Name Synonym(s)=SLR1-like2%2C GRAS protein 30;Note=GRAS transcription factor domain containing protein.;Transcript_evidence=AK107256 (DDBJ%2C Best hit);ORF_evidence=Q6S5L6 (UniProt);InterPro=Transcription factor GRAS (IPR005202);NIAS_FLcDNA=002-125-G08;Oryzabase=7133;Expression=AK107256;TENOR=Os05t0574900-01;KEGG=Os05t0574900-01
Chr05	irgsp1_rep	five_prime_UTR	28640262	28640333	.	+	.	Parent=Os05t0574900-01
Chr05	irgsp1_rep	CDS	28640334	28641836	.	+	0	Parent=Os05t0574900-01
Chr05	irgsp1_rep	three_prime_UTR	28641837	28641986	.	+	.	Parent=Os05t0574900-01
Chr05	irgsp1_rep	mRNA	28647699	28648244	.	+	.	ID=Os05t0575000-01;Name=Os05t0575000-01;Locus_id=Os05g0575000;RAP-DB Gene Symbol Synonym(s)=OsCV%2C CV;RAP-DB Gene Name Synonym(s)=CHLOROPLAST VESICULATION;CGSNL Gene Symbol=CV;CGSNL Gene Name=CHLOROPLAST VESICULATION;Oryzabase Gene Symbol Synonym(s)=OsCV;Note=Stress-induced chloroplast degradation%2C Regulation of nitrogen assimilation during stress-induced senescence;Transcript_evidence=AK243121;ORF_evidence=Q6F369;NIAS_FLcDNA=J100028J02;Manual Curation=October 22%2C 2018;Literature_PMID=28992306;Oryzabase=22146;TENOR=Os05t0575000-01;KEGG=Os05t0575000-01
Chr05	irgsp1_rep	five_prime_UTR	28647699	28647699	.	+	.	Parent=Os05t0575000-01
Chr05	irgsp1_rep	CDS	28647700	28647915	.	+	0	Parent=Os05t0575000-01
Chr05	irgsp1_rep	three_prime_UTR	28647916	28648244	.	+	.	Parent=Os05t0575000-01
Chr05	irgsp1_rep	mRNA	28649686	28652690	.	-	.	ID=Os05t0575101-00;Name=Os05t0575101-00;Locus_id=Os05g0575101;Note=Similar to amino acid transport protein.;Transcript_evidence=BT061845 (DDBJ);ORF_evidence=NP_001149493.1 (RefSeq);TENOR=Os05t0575101-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	28652204	28652690	.	-	.	Parent=Os05t0575101-00
Chr05	irgsp1_rep	CDS	28652186	28652203	.	-	0	Parent=Os05t0575101-00
Chr05	irgsp1_rep	CDS	28649686	28650201	.	-	0	Parent=Os05t0575101-00
Chr05	irgsp1_rep	mRNA	28654730	28661347	.	+	.	ID=Os05t0575300-01;Name=Os05t0575300-01;Locus_id=Os05g0575300;Note=Similar to Translation initiation factor IF-2.;Transcript_evidence=AK068873 (DDBJ%2C Best hit);ORF_evidence=B9G7K8 (UniProt);GO=Biological Process: translational initiation (GO:0006413),Molecular Function: translation initiation factor activity (GO:0003743),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Protein synthesis factor%2C GTP-binding (IPR000795),Small GTP-binding protein domain (IPR005225),Translation initiation factor IF-2%2C N-terminal (IPR006847),Translation initiation factor IF- 2 (IPR015760);NIAS_FLcDNA=J013170P17;Expression=AK068873;TENOR=Os05t0575300-01;KEGG=Os05t0575300-01
Chr05	irgsp1_rep	five_prime_UTR	28654730	28654937	.	+	.	Parent=Os05t0575300-01
Chr05	irgsp1_rep	CDS	28654938	28656257	.	+	0	Parent=Os05t0575300-01
Chr05	irgsp1_rep	CDS	28656338	28656370	.	+	0	Parent=Os05t0575300-01
Chr05	irgsp1_rep	CDS	28656883	28656996	.	+	0	Parent=Os05t0575300-01
Chr05	irgsp1_rep	CDS	28660965	28661123	.	+	0	Parent=Os05t0575300-01
Chr05	irgsp1_rep	three_prime_UTR	28661124	28661347	.	+	.	Parent=Os05t0575300-01
Chr05	irgsp1_rep	mRNA	28656123	28661349	.	+	.	ID=Os05t0575300-02;Name=Os05t0575300-02;Locus_id=Os05g0575300;Note=Similar to Translation initiation factor IF-2%2C chloroplast precursor (PvIF2cp).;Transcript_evidence=AK058719 (DDBJ%2C Best hit);ORF_evidence=B9G7K8 (UniProt);GO=Biological Process: translational initiation (GO:0006413),Cellular Component: intracellular (GO:0005622),Molecular Function: translation initiation factor activity (GO:0003743),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Translation initiation factor aIF-2%2C bacterial-like (IPR000178),Protein synthesis factor%2C GTP-binding (IPR000795),Translation elongation factor EFTu/EF1A%2C domain 2 (IPR004161),Small GTP-binding protein domain (IPR005225),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Translation initiation factor IF- 2 (IPR015760),Translation initiation factor IF- 2%2C domain 3 (IPR023115);NIAS_FLcDNA=001-019-E07;Expression=AK058719;TENOR=Os05t0575300-02;KEGG=Os05t0575300-02
Chr05	irgsp1_rep	CDS	28656123	28656257	.	+	0	Parent=Os05t0575300-02
Chr05	irgsp1_rep	CDS	28656338	28656370	.	+	0	Parent=Os05t0575300-02
Chr05	irgsp1_rep	CDS	28656883	28656996	.	+	0	Parent=Os05t0575300-02
Chr05	irgsp1_rep	CDS	28657093	28657242	.	+	0	Parent=Os05t0575300-02
Chr05	irgsp1_rep	CDS	28657330	28657428	.	+	0	Parent=Os05t0575300-02
Chr05	irgsp1_rep	CDS	28657547	28657609	.	+	0	Parent=Os05t0575300-02
Chr05	irgsp1_rep	CDS	28657690	28657845	.	+	0	Parent=Os05t0575300-02
Chr05	irgsp1_rep	CDS	28657976	28658041	.	+	0	Parent=Os05t0575300-02
Chr05	irgsp1_rep	CDS	28659400	28659636	.	+	0	Parent=Os05t0575300-02
Chr05	irgsp1_rep	CDS	28659729	28660004	.	+	0	Parent=Os05t0575300-02
Chr05	irgsp1_rep	CDS	28660386	28660574	.	+	0	Parent=Os05t0575300-02
Chr05	irgsp1_rep	CDS	28660785	28660946	.	+	0	Parent=Os05t0575300-02
Chr05	irgsp1_rep	three_prime_UTR	28660947	28661349	.	+	.	Parent=Os05t0575300-02
Chr05	irgsp1_rep	mRNA	28663289	28666596	.	+	.	ID=Os05t0575400-01;Name=Os05t0575400-01;Locus_id=Os05g0575400;Oryzabase Gene Symbol Synonym(s)=OsFbox283%2C Os_F0368;Oryzabase Gene Name Synonym(s)=F-box protein 283;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK067354 (DDBJ%2C Best hit);ORF_evidence=Q01K45 (UniProt);NIAS_FLcDNA=J013103C07;Oryzabase=17063;Expression=AK067354;TENOR=Os05t0575400-01;KEGG=Os05t0575400-01
Chr05	irgsp1_rep	five_prime_UTR	28663289	28663515	.	+	.	Parent=Os05t0575400-01
Chr05	irgsp1_rep	five_prime_UTR	28663713	28664049	.	+	.	Parent=Os05t0575400-01
Chr05	irgsp1_rep	CDS	28664050	28664101	.	+	0	Parent=Os05t0575400-01
Chr05	irgsp1_rep	CDS	28664227	28664333	.	+	2	Parent=Os05t0575400-01
Chr05	irgsp1_rep	CDS	28665083	28666057	.	+	0	Parent=Os05t0575400-01
Chr05	irgsp1_rep	three_prime_UTR	28666058	28666596	.	+	.	Parent=Os05t0575400-01
Chr05	irgsp1_rep	mRNA	28667173	28668847	.	+	.	ID=Os05t0575500-01;Name=Os05t0575500-01;Locus_id=Os05g0575500;Note=Conserved hypothetical protein.;Transcript_evidence=AK103770 (DDBJ%2C Best hit);ORF_evidence=NP_001175178.1 (RefSeq);NIAS_FLcDNA=J033143J11;Expression=AK103770;TENOR=Os05t0575500-01;KEGG=Os05t0575500-01
Chr05	irgsp1_rep	five_prime_UTR	28667173	28667186	.	+	.	Parent=Os05t0575500-01
Chr05	irgsp1_rep	CDS	28667187	28667612	.	+	0	Parent=Os05t0575500-01
Chr05	irgsp1_rep	three_prime_UTR	28667613	28668847	.	+	.	Parent=Os05t0575500-01
Chr05	irgsp1_rep	mRNA	28683365	28684648	.	-	.	ID=Os05t0575800-01;Name=Os05t0575800-01;Locus_id=Os05g0575800;Note=Hypothetical conserved gene.;Transcript_evidence=AK069002 (DDBJ%2C Best hit);ORF_evidence=A2Y7S9 (UniProt);NIAS_FLcDNA=J023003E03;Expression=AK069002;TENOR=Os05t0575800-01;KEGG=Os05t0575800-01
Chr05	irgsp1_rep	five_prime_UTR	28684088	28684648	.	-	.	Parent=Os05t0575800-01
Chr05	irgsp1_rep	CDS	28683620	28684087	.	-	0	Parent=Os05t0575800-01
Chr05	irgsp1_rep	three_prime_UTR	28683365	28683619	.	-	.	Parent=Os05t0575800-01
Chr05	irgsp1_rep	mRNA	28702233	28704494	.	+	.	ID=Os05t0576300-01;Name=Os05t0576300-01;Locus_id=Os05g0576300;CGSNL Gene Symbol=C3H39;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39;Oryzabase Gene Symbol Synonym(s)=OsC3H39;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 39;Note=Zinc finger%2C CCCH-type domain containing protein.;Transcript_evidence=AK106354 (DDBJ%2C Best hit);ORF_evidence=NP_001148404.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=002-102-A03;Oryzabase=8604;Expression=AK106354;TENOR=Os05t0576300-01;KEGG=Os05t0576300-01
Chr05	irgsp1_rep	five_prime_UTR	28702233	28702363	.	+	.	Parent=Os05t0576300-01
Chr05	irgsp1_rep	five_prime_UTR	28702887	28702914	.	+	.	Parent=Os05t0576300-01
Chr05	irgsp1_rep	CDS	28702915	28703604	.	+	0	Parent=Os05t0576300-01
Chr05	irgsp1_rep	CDS	28703737	28704078	.	+	0	Parent=Os05t0576300-01
Chr05	irgsp1_rep	three_prime_UTR	28704079	28704494	.	+	.	Parent=Os05t0576300-01
Chr05	irgsp1_rep	mRNA	28706617	28708590	.	-	.	ID=Os05t0576500-01;Name=Os05t0576500-01;Locus_id=Os05g0576500;Note=Hypothetical conserved gene.;Transcript_evidence=AK241368 (DDBJ%2C Best hit);ORF_evidence=A2Y7T1 (UniProt);NIAS_FLcDNA=J065152P04;TENOR=Os05t0576500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	28708524	28708590	.	-	.	Parent=Os05t0576500-01
Chr05	irgsp1_rep	CDS	28708126	28708523	.	-	0	Parent=Os05t0576500-01
Chr05	irgsp1_rep	CDS	28707812	28708037	.	-	1	Parent=Os05t0576500-01
Chr05	irgsp1_rep	three_prime_UTR	28706617	28707811	.	-	.	Parent=Os05t0576500-01
Chr05	irgsp1_rep	mRNA	28705384	28708589	.	-	.	ID=Os05t0576500-02;Name=Os05t0576500-02;Locus_id=Os05g0576500;Note=Hypothetical conserved gene.;Transcript_evidence=AK287489 (DDBJ%2C Best hit);ORF_evidence=A2Y7T1 (UniProt);NIAS_FLcDNA=J043030C11;TENOR=Os05t0576500-02;KEGG=Os05t0576500-02
Chr05	irgsp1_rep	five_prime_UTR	28708524	28708589	.	-	.	Parent=Os05t0576500-02
Chr05	irgsp1_rep	CDS	28708126	28708523	.	-	0	Parent=Os05t0576500-02
Chr05	irgsp1_rep	CDS	28707812	28708037	.	-	1	Parent=Os05t0576500-02
Chr05	irgsp1_rep	three_prime_UTR	28706685	28707811	.	-	.	Parent=Os05t0576500-02
Chr05	irgsp1_rep	three_prime_UTR	28705384	28706147	.	-	.	Parent=Os05t0576500-02
Chr05	irgsp1_rep	mRNA	28710320	28711241	.	-	.	ID=Os05t0576600-01;Name=Os05t0576600-01;Locus_id=Os05g0576600;Note=Conserved hypothetical protein.;Transcript_evidence=AK107732 (DDBJ%2C Best hit);ORF_evidence=A2Y7T2 (UniProt);NIAS_FLcDNA=002-132-F10;Expression=AK107732;TENOR=Os05t0576600-01;KEGG=Os05t0576600-01
Chr05	irgsp1_rep	five_prime_UTR	28711119	28711241	.	-	.	Parent=Os05t0576600-01
Chr05	irgsp1_rep	CDS	28710588	28711118	.	-	0	Parent=Os05t0576600-01
Chr05	irgsp1_rep	three_prime_UTR	28710320	28710587	.	-	.	Parent=Os05t0576600-01
Chr05	irgsp1_rep	mRNA	28716494	28717779	.	-	.	ID=Os05t0576700-01;Name=Os05t0576700-01;Locus_id=Os05g0576700;Note=Oleosin family protein.;Transcript_evidence=AK108377 (DDBJ%2C Best hit),AK063599 (DDBJ%2C Best hit);ORF_evidence=NP_001152711.1 (RefSeq);GO=Cellular Component: monolayer-surrounded lipid storage body (GO:0012511),Cellular Component: integral to membrane (GO:0016021);InterPro=Oleosin (IPR000136);NIAS_FLcDNA=002-142-E02,001-118-B08;Expression=AK108377;TENOR=Os05t0576700-01;KEGG=Os05t0576700-01
Chr05	irgsp1_rep	five_prime_UTR	28717725	28717779	.	-	.	Parent=Os05t0576700-01
Chr05	irgsp1_rep	CDS	28717203	28717724	.	-	0	Parent=Os05t0576700-01
Chr05	irgsp1_rep	three_prime_UTR	28716494	28717202	.	-	.	Parent=Os05t0576700-01
Chr05	irgsp1_rep	mRNA	28717206	28717868	.	+	.	ID=Os05t0576750-00;Name=Os05t0576750-00;Locus_id=Os05g0576750;Note=Hypothetical protein.;Transcript_evidence=EU946435 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0576750-00
Chr05	irgsp1_rep	five_prime_UTR	28717206	28717235	.	+	.	Parent=Os05t0576750-00
Chr05	irgsp1_rep	CDS	28717236	28717745	.	+	0	Parent=Os05t0576750-00
Chr05	irgsp1_rep	three_prime_UTR	28717746	28717868	.	+	.	Parent=Os05t0576750-00
Chr05	irgsp1_rep	mRNA	28721012	28726493	.	+	.	ID=Os05t0576800-01;Name=Os05t0576800-01;Locus_id=Os05g0576800;Oryzabase Gene Symbol Synonym(s)=OsMPK17%2C OsMPK21-1;Oryzabase Gene Name Synonym(s)=Mitogen-activated protein kinase 17%2C MAP kinase 21-1;Note=Similar to Blast and wounding induced mitogen-activated protein kinase.;Transcript_evidence=AK070644 (DDBJ%2C Best hit);ORF_evidence=Q6L5F7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: MAP kinase activity (GO:0004707),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),MAP kinase%2C conserved site (IPR003527),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023062F11;Oryzabase=9262;Expression=AK070644;TENOR=Os05t0576800-01;KEGG=Os05t0576800-01
Chr05	irgsp1_rep	five_prime_UTR	28721012	28721070	.	+	.	Parent=Os05t0576800-01
Chr05	irgsp1_rep	CDS	28721071	28721343	.	+	0	Parent=Os05t0576800-01
Chr05	irgsp1_rep	CDS	28722259	28722658	.	+	0	Parent=Os05t0576800-01
Chr05	irgsp1_rep	CDS	28722742	28722869	.	+	2	Parent=Os05t0576800-01
Chr05	irgsp1_rep	CDS	28722959	28723018	.	+	0	Parent=Os05t0576800-01
Chr05	irgsp1_rep	CDS	28723191	28723340	.	+	0	Parent=Os05t0576800-01
Chr05	irgsp1_rep	CDS	28723712	28723867	.	+	0	Parent=Os05t0576800-01
Chr05	irgsp1_rep	CDS	28723974	28724111	.	+	0	Parent=Os05t0576800-01
Chr05	irgsp1_rep	CDS	28724200	28724273	.	+	0	Parent=Os05t0576800-01
Chr05	irgsp1_rep	CDS	28724498	28724599	.	+	1	Parent=Os05t0576800-01
Chr05	irgsp1_rep	CDS	28725741	28725930	.	+	1	Parent=Os05t0576800-01
Chr05	irgsp1_rep	CDS	28726079	28726156	.	+	0	Parent=Os05t0576800-01
Chr05	irgsp1_rep	three_prime_UTR	28726157	28726493	.	+	.	Parent=Os05t0576800-01
Chr05	irgsp1_rep	mRNA	28735044	28737929	.	-	.	ID=Os05t0576900-01;Name=Os05t0576900-01;Locus_id=Os05g0576900;CGSNL Gene Symbol=PIN10B;CGSNL Gene Name=PIN PROTEIN 10B;Oryzabase Gene Symbol Synonym(s)=PIN3B%2C OsPIN3b%2C OsPIN10b;Oryzabase Gene Name Synonym(s)=PIN PROTEIN 3B;Note=Similar to PIN1-like auxin transport protein.;Transcript_evidence=AK240660 (DDBJ%2C Best hit);ORF_evidence=D5A7J1 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Auxin efflux carrier (IPR004776),Auxin efflux carrier%2C plant type (IPR014024);NIAS_FLcDNA=J023149B17;Oryzabase=8935;TENOR=Os05t0576900-01;KEGG=Os05t0576900-01
Chr05	irgsp1_rep	five_prime_UTR	28737817	28737929	.	-	.	Parent=Os05t0576900-01
Chr05	irgsp1_rep	CDS	28736736	28737816	.	-	0	Parent=Os05t0576900-01
Chr05	irgsp1_rep	CDS	28736374	28736677	.	-	2	Parent=Os05t0576900-01
Chr05	irgsp1_rep	CDS	28736178	28736263	.	-	1	Parent=Os05t0576900-01
Chr05	irgsp1_rep	CDS	28735936	28736093	.	-	2	Parent=Os05t0576900-01
Chr05	irgsp1_rep	CDS	28735752	28735828	.	-	0	Parent=Os05t0576900-01
Chr05	irgsp1_rep	CDS	28735581	28735650	.	-	1	Parent=Os05t0576900-01
Chr05	irgsp1_rep	three_prime_UTR	28735495	28735580	.	-	.	Parent=Os05t0576900-01
Chr05	irgsp1_rep	three_prime_UTR	28735044	28735390	.	-	.	Parent=Os05t0576900-01
Chr05	irgsp1_rep	mRNA	28735755	28737816	.	+	.	ID=Os05t0576950-00;Name=Os05t0576950-00;Locus_id=Os05g0576950;Note=Hypothetical protein.;Transcript_evidence=AK357068 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0576950-00
Chr05	irgsp1_rep	five_prime_UTR	28735755	28735815	.	+	.	Parent=Os05t0576950-00
Chr05	irgsp1_rep	five_prime_UTR	28735924	28736062	.	+	.	Parent=Os05t0576950-00
Chr05	irgsp1_rep	CDS	28736063	28736077	.	+	0	Parent=Os05t0576950-00
Chr05	irgsp1_rep	CDS	28736156	28736251	.	+	0	Parent=Os05t0576950-00
Chr05	irgsp1_rep	CDS	28736359	28736624	.	+	0	Parent=Os05t0576950-00
Chr05	irgsp1_rep	CDS	28736730	28737816	.	+	1	Parent=Os05t0576950-00
Chr05	irgsp1_rep	mRNA	28739299	28740059	.	+	.	ID=Os05t0577000-01;Name=Os05t0577000-01;Locus_id=Os05g0577000;Note=Hypothetical gene.;Transcript_evidence=AK111064 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-175-D11;Expression=AK111064;TENOR=Os05t0577000-01;KEGG=Os05t0577000-01
Chr05	irgsp1_rep	five_prime_UTR	28739299	28739300	.	+	.	Parent=Os05t0577000-01
Chr05	irgsp1_rep	CDS	28739301	28739729	.	+	0	Parent=Os05t0577000-01
Chr05	irgsp1_rep	three_prime_UTR	28739730	28739771	.	+	.	Parent=Os05t0577000-01
Chr05	irgsp1_rep	three_prime_UTR	28739876	28740059	.	+	.	Parent=Os05t0577000-01
Chr05	irgsp1_rep	mRNA	28743711	28744604	.	-	.	ID=Os05t0577100-00;Name=Os05t0577100-00;Locus_id=Os05g0577100;Note=Protein of unknown function DUF617%2C plant family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001151601.1 (RefSeq);InterPro=Protein of unknown function DUF617%2C plant (IPR006460);TENOR=Os05t0577100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	28743711	28744604	.	-	0	Parent=Os05t0577100-00
Chr05	irgsp1_rep	mRNA	28743782	28744311	.	+	.	ID=Os05t0577150-00;Name=Os05t0577150-00;Locus_id=Os05g0577150;Note=Hypothetical protein.;Transcript_evidence=EU968656 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0577150-00
Chr05	irgsp1_rep	five_prime_UTR	28743782	28743782	.	+	.	Parent=Os05t0577150-00
Chr05	irgsp1_rep	CDS	28743783	28744311	.	+	0	Parent=Os05t0577150-00
Chr05	irgsp1_rep	mRNA	28745289	28751662	.	-	.	ID=Os05t0577200-01;Name=Os05t0577200-01;Locus_id=Os05g0577200;Note=Carboxylesterase%2C type B family protein.;Transcript_evidence=AK069756 (DDBJ%2C Best hit);ORF_evidence=B9FIH9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=J023028E24;Expression=AK069756;TENOR=Os05t0577200-01;KEGG=Os05t0577200-01
Chr05	irgsp1_rep	five_prime_UTR	28751603	28751662	.	-	.	Parent=Os05t0577200-01
Chr05	irgsp1_rep	CDS	28751361	28751602	.	-	0	Parent=Os05t0577200-01
Chr05	irgsp1_rep	CDS	28750924	28751000	.	-	1	Parent=Os05t0577200-01
Chr05	irgsp1_rep	CDS	28750640	28750709	.	-	2	Parent=Os05t0577200-01
Chr05	irgsp1_rep	CDS	28750482	28750562	.	-	1	Parent=Os05t0577200-01
Chr05	irgsp1_rep	CDS	28750327	28750401	.	-	1	Parent=Os05t0577200-01
Chr05	irgsp1_rep	CDS	28750085	28750186	.	-	1	Parent=Os05t0577200-01
Chr05	irgsp1_rep	CDS	28749506	28749643	.	-	1	Parent=Os05t0577200-01
Chr05	irgsp1_rep	CDS	28748886	28748951	.	-	1	Parent=Os05t0577200-01
Chr05	irgsp1_rep	CDS	28748641	28748781	.	-	1	Parent=Os05t0577200-01
Chr05	irgsp1_rep	CDS	28747477	28747567	.	-	1	Parent=Os05t0577200-01
Chr05	irgsp1_rep	CDS	28747211	28747372	.	-	0	Parent=Os05t0577200-01
Chr05	irgsp1_rep	three_prime_UTR	28747207	28747210	.	-	.	Parent=Os05t0577200-01
Chr05	irgsp1_rep	three_prime_UTR	28745289	28745489	.	-	.	Parent=Os05t0577200-01
Chr05	irgsp1_rep	mRNA	28757954	28758694	.	-	.	ID=Os05t0577500-01;Name=Os05t0577500-01;Locus_id=Os05g0577500;CGSNL Gene Symbol=CML14;CGSNL Gene Name=CALMODULIN-LIKE PROTEIN 14;Oryzabase Gene Symbol Synonym(s)=OsCML14;Oryzabase Gene Name Synonym(s)=calmodulin-like protein 14;Note=EF-Hand type domain containing protein.;Transcript_evidence=AK119799 (DDBJ%2C Best hit);ORF_evidence=NP_001152942.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=002-175-H08;Oryzabase=10500;Expression=AK119799;TENOR=Os05t0577500-01;KEGG=Os05t0577500-01
Chr05	irgsp1_rep	five_prime_UTR	28758632	28758694	.	-	.	Parent=Os05t0577500-01
Chr05	irgsp1_rep	CDS	28758110	28758631	.	-	0	Parent=Os05t0577500-01
Chr05	irgsp1_rep	three_prime_UTR	28757954	28758109	.	-	.	Parent=Os05t0577500-01
Chr05	irgsp1_rep	mRNA	28760240	28763686	.	-	.	ID=Os05t0577700-01;Name=Os05t0577700-01;Locus_id=Os05g0577700;Note=Similar to ATP binding protein.;Transcript_evidence=AK107217 (DDBJ%2C Best hit);ORF_evidence=NP_001151897.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=002-125-C11;TENOR=Os05t0577700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	28763520	28763686	.	-	.	Parent=Os05t0577700-01
Chr05	irgsp1_rep	CDS	28763213	28763519	.	-	0	Parent=Os05t0577700-01
Chr05	irgsp1_rep	CDS	28762150	28762271	.	-	2	Parent=Os05t0577700-01
Chr05	irgsp1_rep	CDS	28761430	28761626	.	-	0	Parent=Os05t0577700-01
Chr05	irgsp1_rep	CDS	28761105	28761279	.	-	1	Parent=Os05t0577700-01
Chr05	irgsp1_rep	CDS	28760740	28760874	.	-	0	Parent=Os05t0577700-01
Chr05	irgsp1_rep	CDS	28760440	28760649	.	-	0	Parent=Os05t0577700-01
Chr05	irgsp1_rep	three_prime_UTR	28760240	28760439	.	-	.	Parent=Os05t0577700-01
Chr05	irgsp1_rep	mRNA	28767438	28774079	.	-	.	ID=Os05t0577800-01;Name=Os05t0577800-01;Locus_id=Os05g0577800;Note=Conserved hypothetical protein.;Transcript_evidence=AK122027 (DDBJ%2C Best hit);ORF_evidence=B8AX49 (UniProt);NIAS_FLcDNA=J033112C12;Expression=AK122027;TENOR=Os05t0577800-01;KEGG=Os05t0577800-01
Chr05	irgsp1_rep	five_prime_UTR	28774014	28774079	.	-	.	Parent=Os05t0577800-01
Chr05	irgsp1_rep	CDS	28773922	28774013	.	-	0	Parent=Os05t0577800-01
Chr05	irgsp1_rep	CDS	28773214	28773358	.	-	1	Parent=Os05t0577800-01
Chr05	irgsp1_rep	CDS	28772500	28772567	.	-	0	Parent=Os05t0577800-01
Chr05	irgsp1_rep	CDS	28772356	28772409	.	-	1	Parent=Os05t0577800-01
Chr05	irgsp1_rep	CDS	28772169	28772252	.	-	1	Parent=Os05t0577800-01
Chr05	irgsp1_rep	CDS	28771906	28771991	.	-	1	Parent=Os05t0577800-01
Chr05	irgsp1_rep	CDS	28771631	28771711	.	-	2	Parent=Os05t0577800-01
Chr05	irgsp1_rep	CDS	28770730	28770860	.	-	2	Parent=Os05t0577800-01
Chr05	irgsp1_rep	CDS	28769819	28769860	.	-	0	Parent=Os05t0577800-01
Chr05	irgsp1_rep	CDS	28769368	28769444	.	-	0	Parent=Os05t0577800-01
Chr05	irgsp1_rep	CDS	28769206	28769296	.	-	1	Parent=Os05t0577800-01
Chr05	irgsp1_rep	CDS	28768708	28768789	.	-	0	Parent=Os05t0577800-01
Chr05	irgsp1_rep	CDS	28768093	28768165	.	-	2	Parent=Os05t0577800-01
Chr05	irgsp1_rep	CDS	28767794	28767962	.	-	1	Parent=Os05t0577800-01
Chr05	irgsp1_rep	three_prime_UTR	28767438	28767793	.	-	.	Parent=Os05t0577800-01
Chr05	irgsp1_rep	mRNA	28774967	28779841	.	-	.	ID=Os05t0577900-01;Name=Os05t0577900-01;Locus_id=Os05g0577900;Note=Conserved hypothetical protein.;Transcript_evidence=AK064201 (DDBJ%2C Best hit);ORF_evidence=Q6L5F1 (UniProt);NIAS_FLcDNA=002-104-D11;Expression=AK064201;TENOR=Os05t0577900-01;KEGG=Os05t0577900-01
Chr05	irgsp1_rep	five_prime_UTR	28779771	28779841	.	-	.	Parent=Os05t0577900-01
Chr05	irgsp1_rep	CDS	28779688	28779770	.	-	0	Parent=Os05t0577900-01
Chr05	irgsp1_rep	CDS	28779433	28779580	.	-	1	Parent=Os05t0577900-01
Chr05	irgsp1_rep	CDS	28779184	28779224	.	-	0	Parent=Os05t0577900-01
Chr05	irgsp1_rep	CDS	28779013	28779066	.	-	1	Parent=Os05t0577900-01
Chr05	irgsp1_rep	CDS	28778833	28778916	.	-	1	Parent=Os05t0577900-01
Chr05	irgsp1_rep	CDS	28778584	28778672	.	-	1	Parent=Os05t0577900-01
Chr05	irgsp1_rep	CDS	28778341	28778421	.	-	2	Parent=Os05t0577900-01
Chr05	irgsp1_rep	CDS	28777955	28778088	.	-	2	Parent=Os05t0577900-01
Chr05	irgsp1_rep	CDS	28777410	28777451	.	-	0	Parent=Os05t0577900-01
Chr05	irgsp1_rep	CDS	28776705	28776781	.	-	0	Parent=Os05t0577900-01
Chr05	irgsp1_rep	CDS	28776538	28776628	.	-	1	Parent=Os05t0577900-01
Chr05	irgsp1_rep	CDS	28775886	28775967	.	-	0	Parent=Os05t0577900-01
Chr05	irgsp1_rep	CDS	28775365	28775437	.	-	2	Parent=Os05t0577900-01
Chr05	irgsp1_rep	CDS	28775114	28775282	.	-	1	Parent=Os05t0577900-01
Chr05	irgsp1_rep	three_prime_UTR	28774967	28775113	.	-	.	Parent=Os05t0577900-01
Chr05	irgsp1_rep	mRNA	28780058	28782719	.	+	.	ID=Os05t0578000-01;Name=Os05t0578000-01;Locus_id=Os05g0578000;Note=Similar to PEX14 protein.;Transcript_evidence=AK065040 (DDBJ%2C Best hit);ORF_evidence=NP_001152579.1 (RefSeq);GO=Cellular Component: peroxisome (GO:0005777),Cellular Component: membrane (GO:0016020);InterPro=Peroxisome membrane anchor protein Pex14p%2C N-terminal (IPR006785);NIAS_FLcDNA=J013001H17;Expression=AK065040;TENOR=Os05t0578000-01;KEGG=Os05t0578000-01
Chr05	irgsp1_rep	five_prime_UTR	28780058	28780111	.	+	.	Parent=Os05t0578000-01
Chr05	irgsp1_rep	CDS	28780112	28780187	.	+	0	Parent=Os05t0578000-01
Chr05	irgsp1_rep	CDS	28780333	28780556	.	+	2	Parent=Os05t0578000-01
Chr05	irgsp1_rep	CDS	28780671	28780716	.	+	0	Parent=Os05t0578000-01
Chr05	irgsp1_rep	CDS	28780897	28780928	.	+	2	Parent=Os05t0578000-01
Chr05	irgsp1_rep	CDS	28781039	28781081	.	+	0	Parent=Os05t0578000-01
Chr05	irgsp1_rep	CDS	28781166	28781233	.	+	2	Parent=Os05t0578000-01
Chr05	irgsp1_rep	CDS	28781858	28781902	.	+	0	Parent=Os05t0578000-01
Chr05	irgsp1_rep	CDS	28781966	28782034	.	+	0	Parent=Os05t0578000-01
Chr05	irgsp1_rep	CDS	28782227	28782439	.	+	0	Parent=Os05t0578000-01
Chr05	irgsp1_rep	three_prime_UTR	28782440	28782719	.	+	.	Parent=Os05t0578000-01
Chr05	irgsp1_rep	mRNA	28786934	28788169	.	-	.	ID=Os05t0578100-01;Name=Os05t0578100-01;Locus_id=Os05g0578100;Note=Protein of unknown function DUF1645 family protein.;Transcript_evidence=AK108425 (DDBJ%2C Best hit);ORF_evidence=A2Y7U6 (UniProt);InterPro=Protein of unknown function DUF1645 (IPR012442);NIAS_FLcDNA=002-143-A06;Expression=AK108425;TENOR=Os05t0578100-01;KEGG=Os05t0578100-01
Chr05	irgsp1_rep	five_prime_UTR	28788093	28788169	.	-	.	Parent=Os05t0578100-01
Chr05	irgsp1_rep	CDS	28787172	28788092	.	-	0	Parent=Os05t0578100-01
Chr05	irgsp1_rep	three_prime_UTR	28786934	28787171	.	-	.	Parent=Os05t0578100-01
Chr05	irgsp1_rep	mRNA	28795466	28801237	.	+	.	ID=Os05t0578500-01;Name=Os05t0578500-01;Locus_id=Os05g0578500;CGSNL Gene Symbol=CCR23;CGSNL Gene Name=CINNAMOYL-COA REDUCTASE 23;Oryzabase Gene Symbol Synonym(s)=OsCCR23;Oryzabase Gene Name Synonym(s)=Cinnamoyl-CoA reductase 23;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK062591 (DDBJ%2C Best hit);ORF_evidence=B6TK03 (UniProt);GO=Biological Process: steroid biosynthetic process (GO:0006694),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: 3-beta-hydroxy-delta5-steroid dehydrogenase activity (GO:0003854),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616);InterPro=3-beta hydroxysteroid dehydrogenase/isomerase (IPR002225),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-100-H01;Oryzabase=22249;Expression=AK062591;TENOR=Os05t0578500-01;KEGG=Os05t0578500-01
Chr05	irgsp1_rep	five_prime_UTR	28795466	28795618	.	+	.	Parent=Os05t0578500-01
Chr05	irgsp1_rep	CDS	28795619	28795877	.	+	0	Parent=Os05t0578500-01
Chr05	irgsp1_rep	CDS	28797672	28797847	.	+	2	Parent=Os05t0578500-01
Chr05	irgsp1_rep	CDS	28800164	28800367	.	+	0	Parent=Os05t0578500-01
Chr05	irgsp1_rep	CDS	28800503	28800656	.	+	0	Parent=Os05t0578500-01
Chr05	irgsp1_rep	CDS	28800760	28801106	.	+	2	Parent=Os05t0578500-01
Chr05	irgsp1_rep	three_prime_UTR	28801107	28801237	.	+	.	Parent=Os05t0578500-01
Chr05	irgsp1_rep	mRNA	28802278	28804210	.	-	.	ID=Os05t0578600-01;Name=Os05t0578600-01;Locus_id=Os05g0578600;Oryzabase Gene Symbol Synonym(s)=OsPGL21%2C PGL21;Oryzabase Gene Name Synonym(s)=Polygalacturonases-Like 21%2C PG-like 21;Note=Similar to Polygalacturonase PG2.;Transcript_evidence=AK108477 (DDBJ%2C Best hit);ORF_evidence=NP_001148771.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=002-143-E12;Oryzabase=22298;Expression=AK108477;TENOR=Os05t0578600-01;KEGG=Os05t0578600-01
Chr05	irgsp1_rep	five_prime_UTR	28804210	28804210	.	-	.	Parent=Os05t0578600-01
Chr05	irgsp1_rep	CDS	28804108	28804209	.	-	0	Parent=Os05t0578600-01
Chr05	irgsp1_rep	CDS	28803979	28804020	.	-	0	Parent=Os05t0578600-01
Chr05	irgsp1_rep	CDS	28803679	28803886	.	-	0	Parent=Os05t0578600-01
Chr05	irgsp1_rep	CDS	28802965	28803155	.	-	2	Parent=Os05t0578600-01
Chr05	irgsp1_rep	CDS	28802483	28802878	.	-	0	Parent=Os05t0578600-01
Chr05	irgsp1_rep	three_prime_UTR	28802278	28802482	.	-	.	Parent=Os05t0578600-01
Chr05	irgsp1_rep	mRNA	28802540	28803948	.	+	.	ID=Os05t0578750-00;Name=Os05t0578750-00;Locus_id=Os05g0578750;Note=Hypothetical protein.;Transcript_evidence=EU945265 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0578750-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	28802540	28802956	.	+	.	Parent=Os05t0578750-00
Chr05	irgsp1_rep	CDS	28802957	28803217	.	+	0	Parent=Os05t0578750-00
Chr05	irgsp1_rep	CDS	28803663	28803701	.	+	0	Parent=Os05t0578750-00
Chr05	irgsp1_rep	three_prime_UTR	28803702	28803948	.	+	.	Parent=Os05t0578750-00
Chr05	irgsp1_rep	mRNA	28817605	28818839	.	+	.	ID=Os05t0578900-01;Name=Os05t0578900-01;Locus_id=Os05g0578900;RAP-DB Gene Symbol Synonym(s)=NL1%2C nl1%2C OsGATA15%2C SNFL1;RAP-DB Gene Name Synonym(s)=NECK LEAF 1%2C neck leaf1%2C neck leaf 1%2C neck leaf-1%2C short and narrow flag leaf 1;CGSNL Gene Symbol=NL1;CGSNL Gene Name=NECK LEAF 1;Oryzabase Gene Symbol Synonym(s)=nl1%2C OsGATA15%2C GATA15;Oryzabase Gene Name Synonym(s)=neck leaf1%2C neck leaf 1%2C neck leaf-1%2C NECK LEAF1%2C GATA transcription factor 15%2C GATA factor 15;Note=GAGA-type zinc finger transcription factor%2C Organogenesis%2C Regulation of leaf development;Transcript_evidence=DQ784546 (Genbank),AK073464 (Genbank),AK101287 (Genbank);ORF_evidence=Q6L5E5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Zinc finger%2C GATA-type (IPR000679),Zinc finger%2C NHR/GATA-type (IPR013088);NIAS_FLcDNA=J033044C20,J033033F09;Manual Curation=November 13%2C 2018;Literature_PMID=30413183,19337211;Oryzabase=684;Expression=AK073464;TENOR=Os05t0578900-01;KEGG=Os05t0578900-01;Subcellular location=nucleus (GO:0005634)
Chr05	irgsp1_rep	five_prime_UTR	28817605	28817652	.	+	.	Parent=Os05t0578900-01
Chr05	irgsp1_rep	CDS	28817653	28818171	.	+	0	Parent=Os05t0578900-01
Chr05	irgsp1_rep	CDS	28818292	28818612	.	+	0	Parent=Os05t0578900-01
Chr05	irgsp1_rep	three_prime_UTR	28818613	28818839	.	+	.	Parent=Os05t0578900-01
Chr05	irgsp1_rep	mRNA	28819450	28824329	.	-	.	ID=Os05t0579000-01;Name=Os05t0579000-01;Locus_id=Os05g0579000;Note=Similar to Integral membrane protein.;Transcript_evidence=AK068594 (DDBJ%2C Best hit);ORF_evidence=Q9XHW3 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J013154G15;Expression=AK068594;TENOR=Os05t0579000-01;KEGG=Os05t0579000-01
Chr05	irgsp1_rep	five_prime_UTR	28824220	28824329	.	-	.	Parent=Os05t0579000-01
Chr05	irgsp1_rep	CDS	28823920	28824219	.	-	0	Parent=Os05t0579000-01
Chr05	irgsp1_rep	CDS	28823726	28823815	.	-	0	Parent=Os05t0579000-01
Chr05	irgsp1_rep	CDS	28823408	28823467	.	-	0	Parent=Os05t0579000-01
Chr05	irgsp1_rep	CDS	28823254	28823319	.	-	0	Parent=Os05t0579000-01
Chr05	irgsp1_rep	CDS	28822436	28822501	.	-	0	Parent=Os05t0579000-01
Chr05	irgsp1_rep	CDS	28822268	28822343	.	-	0	Parent=Os05t0579000-01
Chr05	irgsp1_rep	CDS	28822053	28822117	.	-	2	Parent=Os05t0579000-01
Chr05	irgsp1_rep	CDS	28821880	28821972	.	-	0	Parent=Os05t0579000-01
Chr05	irgsp1_rep	CDS	28821608	28821688	.	-	0	Parent=Os05t0579000-01
Chr05	irgsp1_rep	CDS	28821444	28821528	.	-	0	Parent=Os05t0579000-01
Chr05	irgsp1_rep	CDS	28820897	28820943	.	-	2	Parent=Os05t0579000-01
Chr05	irgsp1_rep	CDS	28820735	28820797	.	-	0	Parent=Os05t0579000-01
Chr05	irgsp1_rep	CDS	28820596	28820655	.	-	0	Parent=Os05t0579000-01
Chr05	irgsp1_rep	CDS	28820377	28820442	.	-	0	Parent=Os05t0579000-01
Chr05	irgsp1_rep	CDS	28820239	28820298	.	-	0	Parent=Os05t0579000-01
Chr05	irgsp1_rep	CDS	28820011	28820125	.	-	0	Parent=Os05t0579000-01
Chr05	irgsp1_rep	CDS	28819778	28819890	.	-	2	Parent=Os05t0579000-01
Chr05	irgsp1_rep	three_prime_UTR	28819450	28819777	.	-	.	Parent=Os05t0579000-01
Chr05	irgsp1_rep	mRNA	28819771	28824239	.	+	.	ID=Os05t0579050-00;Name=Os05t0579050-00;Locus_id=Os05g0579050;Note=Hypothetical protein.;Transcript_evidence=tplb0033n03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0579050-00
Chr05	irgsp1_rep	five_prime_UTR	28819771	28819886	.	+	.	Parent=Os05t0579050-00
Chr05	irgsp1_rep	five_prime_UTR	28820007	28820160	.	+	.	Parent=Os05t0579050-00
Chr05	irgsp1_rep	five_prime_UTR	28820579	28820820	.	+	.	Parent=Os05t0579050-00
Chr05	irgsp1_rep	five_prime_UTR	28821419	28821526	.	+	.	Parent=Os05t0579050-00
Chr05	irgsp1_rep	five_prime_UTR	28821606	28821683	.	+	.	Parent=Os05t0579050-00
Chr05	irgsp1_rep	five_prime_UTR	28821872	28821971	.	+	.	Parent=Os05t0579050-00
Chr05	irgsp1_rep	five_prime_UTR	28822052	28822126	.	+	.	Parent=Os05t0579050-00
Chr05	irgsp1_rep	five_prime_UTR	28822279	28822332	.	+	.	Parent=Os05t0579050-00
Chr05	irgsp1_rep	five_prime_UTR	28823172	28823340	.	+	.	Parent=Os05t0579050-00
Chr05	irgsp1_rep	five_prime_UTR	28823696	28823738	.	+	.	Parent=Os05t0579050-00
Chr05	irgsp1_rep	CDS	28823739	28823815	.	+	0	Parent=Os05t0579050-00
Chr05	irgsp1_rep	CDS	28823920	28824064	.	+	1	Parent=Os05t0579050-00
Chr05	irgsp1_rep	three_prime_UTR	28824065	28824239	.	+	.	Parent=Os05t0579050-00
Chr05	irgsp1_rep	mRNA	28826582	28827987	.	+	.	ID=Os05t0579100-01;Name=Os05t0579100-01;Locus_id=Os05g0579100;Note=HhH-GPD domain domain containing protein.;Transcript_evidence=AK243635 (DDBJ%2C Best hit);ORF_evidence=NP_001077563.1 (RefSeq);GO=Biological Process: DNA repair (GO:0006281),Biological Process: base-excision repair (GO:0006284),Molecular Function: catalytic activity (GO:0003824);InterPro=HhH-GPD domain (IPR003265),DNA glycosylase (IPR011257),Helix-turn-helix%2C base-excision DNA repair%2C C-terminal (IPR023170);NIAS_FLcDNA=J100087H10;TENOR=Os05t0579100-01;KEGG=Os05t0579100-01 (EC:3.2.2.21)
Chr05	irgsp1_rep	five_prime_UTR	28826582	28826637	.	+	.	Parent=Os05t0579100-01
Chr05	irgsp1_rep	CDS	28826638	28827642	.	+	0	Parent=Os05t0579100-01
Chr05	irgsp1_rep	three_prime_UTR	28827643	28827987	.	+	.	Parent=Os05t0579100-01
Chr05	irgsp1_rep	mRNA	28829948	28832127	.	+	.	ID=Os05t0579200-01;Name=Os05t0579200-01;Locus_id=Os05g0579200;Note=AMP-dependent synthetase and ligase domain containing protein.;Transcript_evidence=AK106436 (DDBJ%2C Best hit);ORF_evidence=A2Y7V3 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873);NIAS_FLcDNA=002-103-D02;Expression=AK106436;TENOR=Os05t0579200-01;KEGG=Os05t0579200-01
Chr05	irgsp1_rep	five_prime_UTR	28829948	28830025	.	+	.	Parent=Os05t0579200-01
Chr05	irgsp1_rep	CDS	28830026	28831975	.	+	0	Parent=Os05t0579200-01
Chr05	irgsp1_rep	three_prime_UTR	28831976	28832127	.	+	.	Parent=Os05t0579200-01
Chr05	irgsp1_rep	mRNA	28835774	28836869	.	+	.	ID=Os05t0579300-01;Name=Os05t0579300-01;Locus_id=Os05g0579300;Oryzabase Gene Symbol Synonym(s)=OsZHD6;Oryzabase Gene Name Synonym(s)=zinc finger homeodomain class homeobox transcription factor 6;Note=Homeodomain-related domain containing protein.;Transcript_evidence=AK111350 (DDBJ%2C Best hit);ORF_evidence=Q9XHW0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Homeobox domain%2C ZF-HD class (IPR006455),ZF-HD homeobox protein%2C Cys/His-rich dimerisation domain (IPR006456),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);NIAS_FLcDNA=002-181-G06;Oryzabase=15619;Expression=AK111350;TENOR=Os05t0579300-01;KEGG=Os05t0579300-01
Chr05	irgsp1_rep	five_prime_UTR	28835774	28835862	.	+	.	Parent=Os05t0579300-01
Chr05	irgsp1_rep	CDS	28835863	28836630	.	+	0	Parent=Os05t0579300-01
Chr05	irgsp1_rep	three_prime_UTR	28836631	28836869	.	+	.	Parent=Os05t0579300-01
Chr05	irgsp1_rep	mRNA	28838409	28840715	.	+	.	ID=Os05t0579500-01;Name=Os05t0579500-01;Locus_id=Os05g0579500;Note=Similar to 10A19I.7.;Transcript_evidence=AK121528 (DDBJ%2C Best hit);ORF_evidence=Q9XHV9 (UniProt);NIAS_FLcDNA=J033030I07;Expression=AK121528;TENOR=Os05t0579500-01;KEGG=Os05t0579500-01
Chr05	irgsp1_rep	five_prime_UTR	28838409	28838492	.	+	.	Parent=Os05t0579500-01
Chr05	irgsp1_rep	CDS	28838493	28838554	.	+	0	Parent=Os05t0579500-01
Chr05	irgsp1_rep	CDS	28838765	28839056	.	+	1	Parent=Os05t0579500-01
Chr05	irgsp1_rep	CDS	28840466	28840477	.	+	0	Parent=Os05t0579500-01
Chr05	irgsp1_rep	three_prime_UTR	28840478	28840715	.	+	.	Parent=Os05t0579500-01
Chr05	irgsp1_rep	mRNA	28845110	28846124	.	-	.	ID=Os05t0579600-01;Name=Os05t0579600-01;Locus_id=Os05g0579600;Note=Homeodomain-like containing protein.;Transcript_evidence=AK241528 (DDBJ%2C Best hit);ORF_evidence=Q9XHV8 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057);NIAS_FLcDNA=J065171E20;TENOR=Os05t0579600-01;KEGG=Os05t0579600-01
Chr05	irgsp1_rep	five_prime_UTR	28846051	28846124	.	-	.	Parent=Os05t0579600-01
Chr05	irgsp1_rep	CDS	28845800	28846050	.	-	0	Parent=Os05t0579600-01
Chr05	irgsp1_rep	CDS	28845445	28845466	.	-	1	Parent=Os05t0579600-01
Chr05	irgsp1_rep	three_prime_UTR	28845110	28845444	.	-	.	Parent=Os05t0579600-01
Chr05	irgsp1_rep	mRNA	28848050	28850435	.	-	.	ID=Os05t0579700-00;Name=Os05t0579700-00;Locus_id=Os05g0579700;Note=Similar to 10A19I.9.;Transcript_evidence=CT836452 (DDBJ%2C Best hit);ORF_evidence=Q9XHV7 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Myb%2C DNA-binding (IPR014778);TENOR=Os05t0579700-00;KEGG=Os05t0579700-00
Chr05	irgsp1_rep	five_prime_UTR	28850343	28850435	.	-	.	Parent=Os05t0579700-00
Chr05	irgsp1_rep	CDS	28850032	28850342	.	-	0	Parent=Os05t0579700-00
Chr05	irgsp1_rep	CDS	28848491	28848515	.	-	1	Parent=Os05t0579700-00
Chr05	irgsp1_rep	three_prime_UTR	28848050	28848490	.	-	.	Parent=Os05t0579700-00
Chr05	irgsp1_rep	mRNA	28854843	28857818	.	+	.	ID=Os05t0579800-01;Name=Os05t0579800-01;Locus_id=Os05g0579800;Oryzabase Gene Symbol Synonym(s)=APC10;Oryzabase Gene Name Synonym(s)=anaphase-promoting complex subunit 10%2C ANAPHASE PROMOTING COMPLEX 10;Note=Similar to Anaphase promoting complex subunit 10 (APC10) (Cyclosome subunit 10).;Transcript_evidence=AK064624 (DDBJ%2C Best hit);ORF_evidence=Q9XHV6 (UniProt);GO=Biological Process: regulation of mitotic metaphase/anaphase transition (GO:0030071),Biological Process: anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process (GO:0031145),Cellular Component: anaphase-promoting complex (GO:0005680);InterPro=Anaphase-promoting complex%2C subunit 10/DOC domain (IPR004939),Galactose-binding domain-like (IPR008979),Anaphase-promoting complex%2C subunit 10 (IPR016901);NIAS_FLcDNA=002-113-E07;Oryzabase=20429;Expression=AK064624;TENOR=Os05t0579800-01;KEGG=Os05t0579800-01
Chr05	irgsp1_rep	five_prime_UTR	28854843	28854855	.	+	.	Parent=Os05t0579800-01
Chr05	irgsp1_rep	CDS	28854856	28855061	.	+	0	Parent=Os05t0579800-01
Chr05	irgsp1_rep	CDS	28855167	28855227	.	+	1	Parent=Os05t0579800-01
Chr05	irgsp1_rep	CDS	28855322	28855414	.	+	0	Parent=Os05t0579800-01
Chr05	irgsp1_rep	CDS	28855832	28855902	.	+	0	Parent=Os05t0579800-01
Chr05	irgsp1_rep	CDS	28856551	28856655	.	+	1	Parent=Os05t0579800-01
Chr05	irgsp1_rep	CDS	28857391	28857460	.	+	1	Parent=Os05t0579800-01
Chr05	irgsp1_rep	three_prime_UTR	28857461	28857818	.	+	.	Parent=Os05t0579800-01
Chr05	irgsp1_rep	mRNA	28864061	28868837	.	+	.	ID=Os05t0579900-01;Name=Os05t0579900-01;Locus_id=Os05g0579900;Oryzabase Gene Symbol Synonym(s)=OsDjC52;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C52;Note=Similar to 10A19I.11.;Transcript_evidence=AK107480 (DDBJ%2C Best hit);ORF_evidence=Q9XHV5 (UniProt);NIAS_FLcDNA=002-129-C01;Oryzabase=12209;TENOR=Os05t0579900-01
Chr05	irgsp1_rep	five_prime_UTR	28864061	28864187	.	+	.	Parent=Os05t0579900-01
Chr05	irgsp1_rep	CDS	28864188	28864636	.	+	0	Parent=Os05t0579900-01
Chr05	irgsp1_rep	CDS	28865970	28868837	.	+	1	Parent=Os05t0579900-01
Chr05	irgsp1_rep	mRNA	28867666	28871054	.	+	.	ID=Os05t0579900-02;Name=Os05t0579900-02;Locus_id=Os05g0579900;Oryzabase Gene Symbol Synonym(s)=OsDjC52;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C52;Note=Heat shock protein DnaJ%2C N-terminal domain containing protein.;Transcript_evidence=AK063417 (DDBJ%2C Best hit);ORF_evidence=Q9XHV5 (UniProt);GO=Molecular Function: heat shock protein binding (GO:0031072);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623);NIAS_FLcDNA=001-115-B10;Oryzabase=12209;Expression=AK063417;TENOR=Os05t0579900-02;KEGG=Os05t0579900-02
Chr05	irgsp1_rep	CDS	28867666	28869276	.	+	0	Parent=Os05t0579900-02
Chr05	irgsp1_rep	CDS	28869395	28869470	.	+	0	Parent=Os05t0579900-02
Chr05	irgsp1_rep	CDS	28869682	28869752	.	+	2	Parent=Os05t0579900-02
Chr05	irgsp1_rep	CDS	28869850	28869915	.	+	0	Parent=Os05t0579900-02
Chr05	irgsp1_rep	CDS	28870003	28870092	.	+	0	Parent=Os05t0579900-02
Chr05	irgsp1_rep	CDS	28870200	28870376	.	+	0	Parent=Os05t0579900-02
Chr05	irgsp1_rep	CDS	28870839	28870874	.	+	0	Parent=Os05t0579900-02
Chr05	irgsp1_rep	three_prime_UTR	28870875	28871054	.	+	.	Parent=Os05t0579900-02
Chr05	irgsp1_rep	mRNA	28871794	28877277	.	-	.	ID=Os05t0580000-01;Name=Os05t0580000-01;Locus_id=Os05g0580000;RAP-DB Gene Symbol Synonym(s)=OsAGPL1%2C OsAPL3;RAP-DB Gene Name Synonym(s)=ADP-glucose pyrophosphorylase large subunit 1;CGSNL Gene Symbol=AGPL3;CGSNL Gene Name=ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 3;Oryzabase Gene Symbol Synonym(s)=OsAGPL3%2C APL3%2C OsAPL3%2C AGPlar%2C OsAGPL1%2C AGPL1;Oryzabase Gene Name Synonym(s)=sativa ADP-glucose pyrophosphorylase large subunit 3%2C ADP-glucose Pyrophosphorylase large subunit 3%2C AGPase large subunit 3%2C AGPase large unit 1%2C AGPase L1;Note=Chloroplastic/amyloplastic ADP-glucose pyrophosphorylase large subunit%2C Starch synthesis in the early stage of developing endosperm%2C Stem starch accumulation;Transcript_evidence=AK100910;ORF_evidence=Q688T8;GO=Biological Process: glycogen biosynthetic process (GO:0005978),Biological Process: biosynthetic process (GO:0009058),Molecular Function: glucose-1-phosphate adenylyltransferase activity (GO:0008878),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=Nucleotide-diphospho-sugar transferases (IPR029044),Trimeric LpxA-like superfamily (IPR011004),Glucose-1-phosphate adenylyltransferase (IPR011831),Nucleotidyl transferase domain (IPR005835),ADP-glucose pyrophosphorylase%2C conserved site (IPR005836);NIAS_FLcDNA=J023132J11;Manual Curation=July 16%2C 2019;Literature_PMID=17406793,DOI:10.1071/FP13105;Oryzabase=8253;Expression=AK100910;TENOR=Os05t0580000-01;KEGG=Os05t0580000-01 (EC:2.7.7.27);Subcellular location=chloroplast (GO:0009507)
Chr05	irgsp1_rep	five_prime_UTR	28876879	28877277	.	-	.	Parent=Os05t0580000-01
Chr05	irgsp1_rep	five_prime_UTR	28875520	28875532	.	-	.	Parent=Os05t0580000-01
Chr05	irgsp1_rep	CDS	28875307	28875519	.	-	0	Parent=Os05t0580000-01
Chr05	irgsp1_rep	CDS	28875078	28875197	.	-	0	Parent=Os05t0580000-01
Chr05	irgsp1_rep	CDS	28874504	28874674	.	-	0	Parent=Os05t0580000-01
Chr05	irgsp1_rep	CDS	28874301	28874390	.	-	0	Parent=Os05t0580000-01
Chr05	irgsp1_rep	CDS	28874105	28874191	.	-	0	Parent=Os05t0580000-01
Chr05	irgsp1_rep	CDS	28873959	28874014	.	-	0	Parent=Os05t0580000-01
Chr05	irgsp1_rep	CDS	28873765	28873858	.	-	1	Parent=Os05t0580000-01
Chr05	irgsp1_rep	CDS	28873569	28873681	.	-	0	Parent=Os05t0580000-01
Chr05	irgsp1_rep	CDS	28873409	28873481	.	-	1	Parent=Os05t0580000-01
Chr05	irgsp1_rep	CDS	28873140	28873220	.	-	0	Parent=Os05t0580000-01
Chr05	irgsp1_rep	CDS	28872882	28872968	.	-	0	Parent=Os05t0580000-01
Chr05	irgsp1_rep	CDS	28872695	28872799	.	-	0	Parent=Os05t0580000-01
Chr05	irgsp1_rep	CDS	28872490	28872596	.	-	0	Parent=Os05t0580000-01
Chr05	irgsp1_rep	CDS	28872327	28872387	.	-	1	Parent=Os05t0580000-01
Chr05	irgsp1_rep	CDS	28872133	28872234	.	-	0	Parent=Os05t0580000-01
Chr05	irgsp1_rep	three_prime_UTR	28871794	28872132	.	-	.	Parent=Os05t0580000-01
Chr05	irgsp1_rep	mRNA	28880516	28881393	.	-	.	ID=Os05t0580200-01;Name=Os05t0580200-01;Locus_id=Os05g0580200;Note=Conserved hypothetical protein.;Transcript_evidence=AK110644 (DDBJ%2C Best hit);ORF_evidence=B8AX56 (UniProt);NIAS_FLcDNA=002-169-D03;Expression=AK110644;TENOR=Os05t0580200-01;KEGG=Os05t0580200-01
Chr05	irgsp1_rep	five_prime_UTR	28881301	28881393	.	-	.	Parent=Os05t0580200-01
Chr05	irgsp1_rep	CDS	28880980	28881300	.	-	0	Parent=Os05t0580200-01
Chr05	irgsp1_rep	three_prime_UTR	28880516	28880979	.	-	.	Parent=Os05t0580200-01
Chr05	irgsp1_rep	mRNA	28889542	28896992	.	+	.	ID=Os05t0580500-01;Name=Os05t0580500-01;Locus_id=Os05g0580500;CGSNL Gene Symbol=RAD21-4;CGSNL Gene Name=RAD21-4 PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsRad21-4%2C REC8%2C OsREC8%2C OsRAD21-4;Oryzabase Gene Name Synonym(s)=Rad21-4 protein%2C RECombination 8;Note=Similar to 10A19I.14.;Transcript_evidence=AK102000 (DDBJ%2C Best hit);ORF_evidence=Q9XHV2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Rad21/Rec8-like protein%2C N-terminal (IPR006910);NIAS_FLcDNA=J033079M20;Oryzabase=6886;TENOR=Os05t0580500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	28889542	28889727	.	+	.	Parent=Os05t0580500-01
Chr05	irgsp1_rep	five_prime_UTR	28889918	28890040	.	+	.	Parent=Os05t0580500-01
Chr05	irgsp1_rep	CDS	28890041	28890143	.	+	0	Parent=Os05t0580500-01
Chr05	irgsp1_rep	CDS	28890239	28890283	.	+	2	Parent=Os05t0580500-01
Chr05	irgsp1_rep	CDS	28890370	28890437	.	+	2	Parent=Os05t0580500-01
Chr05	irgsp1_rep	three_prime_UTR	28890438	28890574	.	+	.	Parent=Os05t0580500-01
Chr05	irgsp1_rep	three_prime_UTR	28891772	28891868	.	+	.	Parent=Os05t0580500-01
Chr05	irgsp1_rep	three_prime_UTR	28892026	28892107	.	+	.	Parent=Os05t0580500-01
Chr05	irgsp1_rep	three_prime_UTR	28892187	28892265	.	+	.	Parent=Os05t0580500-01
Chr05	irgsp1_rep	three_prime_UTR	28892375	28892587	.	+	.	Parent=Os05t0580500-01
Chr05	irgsp1_rep	three_prime_UTR	28893223	28893266	.	+	.	Parent=Os05t0580500-01
Chr05	irgsp1_rep	three_prime_UTR	28893347	28893502	.	+	.	Parent=Os05t0580500-01
Chr05	irgsp1_rep	three_prime_UTR	28893599	28893767	.	+	.	Parent=Os05t0580500-01
Chr05	irgsp1_rep	three_prime_UTR	28893883	28893950	.	+	.	Parent=Os05t0580500-01
Chr05	irgsp1_rep	three_prime_UTR	28894062	28894209	.	+	.	Parent=Os05t0580500-01
Chr05	irgsp1_rep	three_prime_UTR	28894273	28894360	.	+	.	Parent=Os05t0580500-01
Chr05	irgsp1_rep	three_prime_UTR	28895358	28895485	.	+	.	Parent=Os05t0580500-01
Chr05	irgsp1_rep	three_prime_UTR	28895585	28895669	.	+	.	Parent=Os05t0580500-01
Chr05	irgsp1_rep	three_prime_UTR	28895753	28895865	.	+	.	Parent=Os05t0580500-01
Chr05	irgsp1_rep	three_prime_UTR	28896581	28896992	.	+	.	Parent=Os05t0580500-01
Chr05	irgsp1_rep	mRNA	28889622	28896884	.	+	.	ID=Os05t0580500-02;Name=Os05t0580500-02;Locus_id=Os05g0580500;RAP-DB Gene Symbol Synonym(s)=REC8%2C OsREC8%2C OsRad21-4;CGSNL Gene Symbol=RAD21-4;CGSNL Gene Name=RAD21-4 PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsRad21-4%2C REC8%2C OsREC8%2C OsRAD21-4;Oryzabase Gene Name Synonym(s)=Rad21-4 protein%2C RECombination 8;Note=Rice homolog of yeast REC8%2C OsRad21-4 protein%2C Meiotic processes;Transcript_evidence=AY371049 (Zhonghua 10);ORF_evidence=Q6UFU7;GO=Molecular Function: protein binding (GO:0005515);InterPro=Winged helix DNA-binding domain superfamily (IPR036390),Rad21/Rec8-like protein%2C N-terminal (IPR006910),Rad21/Rec8-like protein%2C C-terminal%2C eukaryotic (IPR006909);Manual Curation=March 28%2C 2019;Literature_PMID=30610223,21606318,16525890;Oryzabase=6886;Subcellular location=Chromosome (GO:0005694) [meiotic]
Chr05	irgsp1_rep	five_prime_UTR	28889622	28889674	.	+	.	Parent=Os05t0580500-02
Chr05	irgsp1_rep	CDS	28889675	28889727	.	+	0	Parent=Os05t0580500-02
Chr05	irgsp1_rep	CDS	28889918	28889986	.	+	1	Parent=Os05t0580500-02
Chr05	irgsp1_rep	CDS	28890085	28890143	.	+	1	Parent=Os05t0580500-02
Chr05	irgsp1_rep	CDS	28890239	28890283	.	+	2	Parent=Os05t0580500-02
Chr05	irgsp1_rep	CDS	28890370	28890389	.	+	2	Parent=Os05t0580500-02
Chr05	irgsp1_rep	CDS	28890498	28890574	.	+	0	Parent=Os05t0580500-02
Chr05	irgsp1_rep	CDS	28891772	28891868	.	+	1	Parent=Os05t0580500-02
Chr05	irgsp1_rep	CDS	28892026	28892107	.	+	0	Parent=Os05t0580500-02
Chr05	irgsp1_rep	CDS	28892187	28892265	.	+	2	Parent=Os05t0580500-02
Chr05	irgsp1_rep	CDS	28892375	28892538	.	+	1	Parent=Os05t0580500-02
Chr05	irgsp1_rep	CDS	28893223	28893266	.	+	2	Parent=Os05t0580500-02
Chr05	irgsp1_rep	CDS	28893347	28893502	.	+	0	Parent=Os05t0580500-02
Chr05	irgsp1_rep	CDS	28893599	28893767	.	+	0	Parent=Os05t0580500-02
Chr05	irgsp1_rep	CDS	28893883	28893950	.	+	2	Parent=Os05t0580500-02
Chr05	irgsp1_rep	CDS	28894062	28894209	.	+	0	Parent=Os05t0580500-02
Chr05	irgsp1_rep	CDS	28894273	28894360	.	+	2	Parent=Os05t0580500-02
Chr05	irgsp1_rep	CDS	28895358	28895485	.	+	1	Parent=Os05t0580500-02
Chr05	irgsp1_rep	CDS	28895585	28895669	.	+	2	Parent=Os05t0580500-02
Chr05	irgsp1_rep	CDS	28895753	28895865	.	+	1	Parent=Os05t0580500-02
Chr05	irgsp1_rep	CDS	28896581	28896663	.	+	2	Parent=Os05t0580500-02
Chr05	irgsp1_rep	three_prime_UTR	28896664	28896884	.	+	.	Parent=Os05t0580500-02
Chr05	irgsp1_rep	mRNA	28897619	28898513	.	-	.	ID=Os05t0580550-00;Name=Os05t0580550-00;Locus_id=Os05g0580550;Note=Similar to 10A19I.15.;Transcript_evidence=EU953213 (DDBJ);ORF_evidence=Q9XHV1 (UniProt);TENOR=Os05t0580550-00
Chr05	irgsp1_rep	five_prime_UTR	28898203	28898513	.	-	.	Parent=Os05t0580550-00
Chr05	irgsp1_rep	CDS	28897619	28898074	.	-	0	Parent=Os05t0580550-00
Chr05	irgsp1_rep	mRNA	28900488	28903104	.	-	.	ID=Os05t0580600-01;Name=Os05t0580600-01;Locus_id=Os05g0580600;Note=Conserved hypothetical protein.;Transcript_evidence=AK109519 (DDBJ%2C Best hit);ORF_evidence=NP_001066859.2 (RefSeq);NIAS_FLcDNA=002-113-C06;TENOR=Os05t0580600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	28901330	28903104	.	-	.	Parent=Os05t0580600-01
Chr05	irgsp1_rep	CDS	28900946	28901329	.	-	0	Parent=Os05t0580600-01
Chr05	irgsp1_rep	three_prime_UTR	28900488	28900945	.	-	.	Parent=Os05t0580600-01
Chr05	irgsp1_rep	mRNA	28901257	28906665	.	+	.	ID=Os05t0580800-00;Name=Os05t0580800-00;Locus_id=Os05g0580800;Note=Similar to GTP binding protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B6U832 (UniProt);TENOR=Os05t0580800-00;KEGG=Os05t0580800-00
Chr05	irgsp1_rep	CDS	28901257	28901765	.	+	0	Parent=Os05t0580800-00
Chr05	irgsp1_rep	CDS	28904734	28904857	.	+	1	Parent=Os05t0580800-00
Chr05	irgsp1_rep	CDS	28906525	28906665	.	+	0	Parent=Os05t0580800-00
Chr05	irgsp1_rep	mRNA	28904690	28912194	.	-	.	ID=Os05t0580900-02;Name=Os05t0580900-02;Locus_id=Os05g0580900;Note=Conserved hypothetical protein.;Transcript_evidence=AK120030 (DDBJ%2C Best hit),AK108609 (DDBJ%2C Best hit);ORF_evidence=Q6I586 (UniProt);NIAS_FLcDNA=002-186-D07,002-147-A04;Expression=AK120030;TENOR=Os05t0580900-02;KEGG=Os05t0580900-02
Chr05	irgsp1_rep	five_prime_UTR	28912090	28912194	.	-	.	Parent=Os05t0580900-02
Chr05	irgsp1_rep	five_prime_UTR	28911868	28911944	.	-	.	Parent=Os05t0580900-02
Chr05	irgsp1_rep	CDS	28911796	28911867	.	-	0	Parent=Os05t0580900-02
Chr05	irgsp1_rep	CDS	28911623	28911706	.	-	0	Parent=Os05t0580900-02
Chr05	irgsp1_rep	CDS	28911194	28911369	.	-	0	Parent=Os05t0580900-02
Chr05	irgsp1_rep	CDS	28905820	28905844	.	-	1	Parent=Os05t0580900-02
Chr05	irgsp1_rep	three_prime_UTR	28904690	28905819	.	-	.	Parent=Os05t0580900-02
Chr05	irgsp1_rep	mRNA	28909583	28910714	.	-	.	ID=Os05t0581000-01;Name=Os05t0581000-01;Locus_id=Os05g0581000;Note=Non-protein coding transcript.;Transcript_evidence=AK062968 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-109-E01;TENOR=Os05t0581000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	exon	28909583	28910714	.	-	.	Parent=Os05t0581000-01
Chr05	irgsp1_rep	mRNA	28912476	28917674	.	+	.	ID=Os05t0581100-00;Name=Os05t0581100-00;Locus_id=Os05g0581100;Note=Hypothetical conserved gene.;Transcript_evidence=CT837663 (DDBJ%2C Best hit);ORF_evidence=B9FLS6 (UniProt);TENOR=Os05t0581100-00;KEGG=Os05t0581100-00
Chr05	irgsp1_rep	five_prime_UTR	28912476	28912634	.	+	.	Parent=Os05t0581100-00
Chr05	irgsp1_rep	CDS	28912635	28912969	.	+	0	Parent=Os05t0581100-00
Chr05	irgsp1_rep	CDS	28913777	28913789	.	+	1	Parent=Os05t0581100-00
Chr05	irgsp1_rep	three_prime_UTR	28913790	28913937	.	+	.	Parent=Os05t0581100-00
Chr05	irgsp1_rep	three_prime_UTR	28914035	28914210	.	+	.	Parent=Os05t0581100-00
Chr05	irgsp1_rep	three_prime_UTR	28916967	28917674	.	+	.	Parent=Os05t0581100-00
Chr05	irgsp1_rep	mRNA	28919968	28921043	.	-	.	ID=Os05t0581200-00;Name=Os05t0581200-00;Locus_id=Os05g0581200;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6L5E3 (UniProt);TENOR=Os05t0581200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	28921002	28921043	.	-	0	Parent=Os05t0581200-00
Chr05	irgsp1_rep	CDS	28920281	28920402	.	-	0	Parent=Os05t0581200-00
Chr05	irgsp1_rep	CDS	28920087	28920193	.	-	1	Parent=Os05t0581200-00
Chr05	irgsp1_rep	CDS	28919968	28920005	.	-	2	Parent=Os05t0581200-00
Chr05	irgsp1_rep	mRNA	28923900	28926029	.	+	.	ID=Os05t0581300-00;Name=Os05t0581300-00;Locus_id=Os05g0581300;Note=Hypothetical conserved gene.;Transcript_evidence=EU974285 (DDBJ);ORF_evidence=NP_001056430.2 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os05t0581300-00;KEGG=Os05t0581300-00
Chr05	irgsp1_rep	CDS	28923900	28926029	.	+	0	Parent=Os05t0581300-00
Chr05	irgsp1_rep	mRNA	28933188	28934351	.	-	.	ID=Os05t0581600-01;Name=Os05t0581600-01;Locus_id=Os05g0581600;Note=Hypothetical protein.;Transcript_evidence=AK110257 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-163-A09;TENOR=Os05t0581600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	28934351	28934351	.	-	.	Parent=Os05t0581600-01
Chr05	irgsp1_rep	CDS	28933829	28934350	.	-	0	Parent=Os05t0581600-01
Chr05	irgsp1_rep	three_prime_UTR	28933188	28933828	.	-	.	Parent=Os05t0581600-01
Chr05	irgsp1_rep	mRNA	28933310	28934607	.	+	.	ID=Os05t0581700-01;Name=Os05t0581700-01;Locus_id=Os05g0581700;Note=Similar to Tie-dyed 1.;Transcript_evidence=AK108181 (DDBJ%2C Best hit);ORF_evidence=B8XIB0 (UniProt);NIAS_FLcDNA=002-140-A12;Expression=AK108181;TENOR=Os05t0581700-01;KEGG=Os05t0581700-01
Chr05	irgsp1_rep	five_prime_UTR	28933310	28933459	.	+	.	Parent=Os05t0581700-01
Chr05	irgsp1_rep	CDS	28933460	28934290	.	+	0	Parent=Os05t0581700-01
Chr05	irgsp1_rep	three_prime_UTR	28934291	28934607	.	+	.	Parent=Os05t0581700-01
Chr05	irgsp1_rep	mRNA	28940141	28948356	.	+	.	ID=Os05t0581800-01;Name=Os05t0581800-01;Locus_id=Os05g0581800;Note=Protein of unknown function DUF1296 family protein.;Transcript_evidence=AK102861 (DDBJ%2C Best hit);ORF_evidence=B9FLS8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=UBA-like (IPR009060),Protein of unknown function DUF1296 (IPR009719);NIAS_FLcDNA=J033111I03;Expression=AK102861;TENOR=Os05t0581800-01;KEGG=Os05t0581800-01
Chr05	irgsp1_rep	five_prime_UTR	28940141	28940305	.	+	.	Parent=Os05t0581800-01
Chr05	irgsp1_rep	CDS	28940306	28940385	.	+	0	Parent=Os05t0581800-01
Chr05	irgsp1_rep	CDS	28940416	28940546	.	+	1	Parent=Os05t0581800-01
Chr05	irgsp1_rep	CDS	28941738	28941781	.	+	2	Parent=Os05t0581800-01
Chr05	irgsp1_rep	CDS	28942847	28942916	.	+	0	Parent=Os05t0581800-01
Chr05	irgsp1_rep	CDS	28943019	28943142	.	+	2	Parent=Os05t0581800-01
Chr05	irgsp1_rep	CDS	28943746	28944386	.	+	1	Parent=Os05t0581800-01
Chr05	irgsp1_rep	CDS	28945420	28945690	.	+	2	Parent=Os05t0581800-01
Chr05	irgsp1_rep	CDS	28945760	28946039	.	+	1	Parent=Os05t0581800-01
Chr05	irgsp1_rep	CDS	28946368	28946535	.	+	0	Parent=Os05t0581800-01
Chr05	irgsp1_rep	CDS	28947193	28947684	.	+	0	Parent=Os05t0581800-01
Chr05	irgsp1_rep	CDS	28947758	28948015	.	+	0	Parent=Os05t0581800-01
Chr05	irgsp1_rep	three_prime_UTR	28948016	28948356	.	+	.	Parent=Os05t0581800-01
Chr05	irgsp1_rep	mRNA	28940354	28948383	.	+	.	ID=Os05t0581800-02;Name=Os05t0581800-02;Locus_id=Os05g0581800;Note=Protein of unknown function DUF1296 domain containing protein.;Transcript_evidence=AK100204 (DDBJ%2C Best hit);ORF_evidence=B9FLS8 (UniProt);InterPro=Protein of unknown function DUF1296 (IPR009719);NIAS_FLcDNA=J023041E07;TENOR=Os05t0581800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	28940354	28940506	.	+	.	Parent=Os05t0581800-02
Chr05	irgsp1_rep	CDS	28940507	28940546	.	+	0	Parent=Os05t0581800-02
Chr05	irgsp1_rep	CDS	28941738	28941781	.	+	2	Parent=Os05t0581800-02
Chr05	irgsp1_rep	CDS	28942847	28942916	.	+	0	Parent=Os05t0581800-02
Chr05	irgsp1_rep	CDS	28943019	28943142	.	+	2	Parent=Os05t0581800-02
Chr05	irgsp1_rep	CDS	28943746	28944386	.	+	1	Parent=Os05t0581800-02
Chr05	irgsp1_rep	CDS	28945420	28945690	.	+	2	Parent=Os05t0581800-02
Chr05	irgsp1_rep	CDS	28945760	28946039	.	+	1	Parent=Os05t0581800-02
Chr05	irgsp1_rep	CDS	28946368	28946535	.	+	0	Parent=Os05t0581800-02
Chr05	irgsp1_rep	CDS	28947193	28947684	.	+	0	Parent=Os05t0581800-02
Chr05	irgsp1_rep	CDS	28947758	28948015	.	+	0	Parent=Os05t0581800-02
Chr05	irgsp1_rep	three_prime_UTR	28948016	28948383	.	+	.	Parent=Os05t0581800-02
Chr05	irgsp1_rep	mRNA	28945886	28948360	.	+	.	ID=Os05t0581800-03;Name=Os05t0581800-03;Locus_id=Os05g0581800;Note=Hypothetical conserved gene.;Transcript_evidence=AK106199 (DDBJ%2C Best hit);ORF_evidence=Q6L5E0 (UniProt);NIAS_FLcDNA=001-208-F03;Expression=AK106199;TENOR=Os05t0581800-03;KEGG=Os05t0581800-03
Chr05	irgsp1_rep	five_prime_UTR	28945886	28945886	.	+	.	Parent=Os05t0581800-03
Chr05	irgsp1_rep	CDS	28945887	28946039	.	+	0	Parent=Os05t0581800-03
Chr05	irgsp1_rep	CDS	28946368	28946535	.	+	0	Parent=Os05t0581800-03
Chr05	irgsp1_rep	CDS	28947193	28947684	.	+	0	Parent=Os05t0581800-03
Chr05	irgsp1_rep	CDS	28947758	28948015	.	+	0	Parent=Os05t0581800-03
Chr05	irgsp1_rep	three_prime_UTR	28948016	28948360	.	+	.	Parent=Os05t0581800-03
Chr05	irgsp1_rep	mRNA	28950853	28952754	.	-	.	ID=Os05t0581900-01;Name=Os05t0581900-01;Locus_id=Os05g0581900;Note=X8 domain containing protein.;Transcript_evidence=AK109090 (DDBJ%2C Best hit);ORF_evidence=B9FLS9 (UniProt);InterPro=X8 (IPR012946);NIAS_FLcDNA=002-155-A02;Expression=AK109090;TENOR=Os05t0581900-01;KEGG=Os05t0581900-01
Chr05	irgsp1_rep	five_prime_UTR	28952645	28952754	.	-	.	Parent=Os05t0581900-01
Chr05	irgsp1_rep	CDS	28952584	28952644	.	-	0	Parent=Os05t0581900-01
Chr05	irgsp1_rep	CDS	28951750	28952244	.	-	2	Parent=Os05t0581900-01
Chr05	irgsp1_rep	CDS	28951474	28951534	.	-	2	Parent=Os05t0581900-01
Chr05	irgsp1_rep	CDS	28951130	28951358	.	-	1	Parent=Os05t0581900-01
Chr05	irgsp1_rep	three_prime_UTR	28950853	28951129	.	-	.	Parent=Os05t0581900-01
Chr05	irgsp1_rep	mRNA	28957544	28958711	.	-	.	ID=Os05t0582000-01;Name=Os05t0582000-01;Locus_id=Os05g0582000;Note=Plant Basic Secretory Protein domain containing protein.;Transcript_evidence=AK289217 (DDBJ%2C Best hit);ORF_evidence=NP_001056435.1 (RefSeq);InterPro=Uncharacterised protein family%2C basic secretory protein (IPR007541);NIAS_FLcDNA=J100062I06;TENOR=Os05t0582000-01;KEGG=Os05t0582000-01
Chr05	irgsp1_rep	five_prime_UTR	28958653	28958711	.	-	.	Parent=Os05t0582000-01
Chr05	irgsp1_rep	CDS	28957759	28958652	.	-	0	Parent=Os05t0582000-01
Chr05	irgsp1_rep	three_prime_UTR	28957544	28957758	.	-	.	Parent=Os05t0582000-01
Chr05	irgsp1_rep	mRNA	28960230	28965678	.	-	.	ID=Os05t0582100-01;Name=Os05t0582100-01;Locus_id=Os05g0582100;Note=Cas1p-like family protein.;Transcript_evidence=AK120492 (DDBJ%2C Best hit);ORF_evidence=XP_002879497.1 (RefSeq);InterPro=Cas1p-like (IPR012419);NIAS_FLcDNA=J013119L11;Expression=AK120492;TENOR=Os05t0582100-01;KEGG=Os05t0582100-01
Chr05	irgsp1_rep	five_prime_UTR	28965579	28965678	.	-	.	Parent=Os05t0582100-01
Chr05	irgsp1_rep	CDS	28965546	28965578	.	-	0	Parent=Os05t0582100-01
Chr05	irgsp1_rep	CDS	28964795	28964886	.	-	0	Parent=Os05t0582100-01
Chr05	irgsp1_rep	CDS	28964441	28964569	.	-	1	Parent=Os05t0582100-01
Chr05	irgsp1_rep	CDS	28964294	28964350	.	-	1	Parent=Os05t0582100-01
Chr05	irgsp1_rep	CDS	28964146	28964218	.	-	1	Parent=Os05t0582100-01
Chr05	irgsp1_rep	CDS	28963446	28963604	.	-	0	Parent=Os05t0582100-01
Chr05	irgsp1_rep	CDS	28962921	28963070	.	-	0	Parent=Os05t0582100-01
Chr05	irgsp1_rep	CDS	28962571	28962826	.	-	0	Parent=Os05t0582100-01
Chr05	irgsp1_rep	CDS	28962367	28962488	.	-	2	Parent=Os05t0582100-01
Chr05	irgsp1_rep	CDS	28962105	28962191	.	-	0	Parent=Os05t0582100-01
Chr05	irgsp1_rep	CDS	28961859	28961947	.	-	0	Parent=Os05t0582100-01
Chr05	irgsp1_rep	CDS	28961679	28961741	.	-	1	Parent=Os05t0582100-01
Chr05	irgsp1_rep	CDS	28961542	28961598	.	-	1	Parent=Os05t0582100-01
Chr05	irgsp1_rep	CDS	28960979	28961075	.	-	1	Parent=Os05t0582100-01
Chr05	irgsp1_rep	CDS	28960740	28960898	.	-	0	Parent=Os05t0582100-01
Chr05	irgsp1_rep	three_prime_UTR	28960230	28960643	.	-	.	Parent=Os05t0582100-01
Chr05	irgsp1_rep	mRNA	28960225	28962606	.	-	.	ID=Os05t0582100-02;Name=Os05t0582100-02;Locus_id=Os05g0582100;Note=Similar to predicted protein.;Transcript_evidence=AK058748 (DDBJ%2C Best hit);ORF_evidence=NP_001031478.1 (RefSeq);InterPro=Cas1p-like (IPR012419);NIAS_FLcDNA=001-019-H05;Expression=AK058748;TENOR=Os05t0582100-02;KEGG=Os05t0582100-02
Chr05	irgsp1_rep	five_prime_UTR	28962605	28962606	.	-	.	Parent=Os05t0582100-02
Chr05	irgsp1_rep	CDS	28962571	28962604	.	-	0	Parent=Os05t0582100-02
Chr05	irgsp1_rep	CDS	28962367	28962488	.	-	2	Parent=Os05t0582100-02
Chr05	irgsp1_rep	CDS	28962105	28962191	.	-	0	Parent=Os05t0582100-02
Chr05	irgsp1_rep	CDS	28961859	28961947	.	-	0	Parent=Os05t0582100-02
Chr05	irgsp1_rep	CDS	28961679	28961741	.	-	1	Parent=Os05t0582100-02
Chr05	irgsp1_rep	CDS	28961542	28961598	.	-	1	Parent=Os05t0582100-02
Chr05	irgsp1_rep	CDS	28960979	28961075	.	-	1	Parent=Os05t0582100-02
Chr05	irgsp1_rep	CDS	28960740	28960898	.	-	0	Parent=Os05t0582100-02
Chr05	irgsp1_rep	three_prime_UTR	28960225	28960643	.	-	.	Parent=Os05t0582100-02
Chr05	irgsp1_rep	mRNA	28984654	28988013	.	+	.	ID=Os05t0582300-01;Name=Os05t0582300-01;Locus_id=Os05g0582300;RAP-DB Gene Symbol Synonym(s)=OsSPS2;RAP-DB Gene Name Synonym(s)=solanesyl diphosphate synthase 2;Oryzabase Gene Symbol Synonym(s)=OsSPS2%2C SPS2;Oryzabase Gene Name Synonym(s)=solanesyl diphosphate synthase 2;Note=Solanesyl diphosphate synthase%2C Providing solanesyl diphosphate for plastoquinone-9 (PQ-9) formation;Transcript_evidence=AK066579,AK101790 (truncated);ORF_evidence=Q75HZ9;GO=Biological Process: isoprenoid biosynthetic process (GO:0008299);InterPro=Isoprenoid synthase domain superfamily (IPR008949),Polyprenyl synthetase (IPR000092),Polyprenyl synthetase%2C conserved site (IPR033749);NIAS_FLcDNA=J013071I03,J033065J10 (truncated);Manual Curation=October 5%2C 2020;Literature_PMID=28751900,20421194;Oryzabase=11197;TENOR=Os05t0582300-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=plastid (GO:0009536)
Chr05	irgsp1_rep	five_prime_UTR	28984654	28984896	.	+	.	Parent=Os05t0582300-01
Chr05	irgsp1_rep	CDS	28984897	28985059	.	+	0	Parent=Os05t0582300-01
Chr05	irgsp1_rep	CDS	28985151	28985290	.	+	2	Parent=Os05t0582300-01
Chr05	irgsp1_rep	CDS	28986352	28986479	.	+	0	Parent=Os05t0582300-01
Chr05	irgsp1_rep	CDS	28986567	28986670	.	+	1	Parent=Os05t0582300-01
Chr05	irgsp1_rep	CDS	28986897	28987024	.	+	2	Parent=Os05t0582300-01
Chr05	irgsp1_rep	CDS	28987106	28987654	.	+	0	Parent=Os05t0582300-01
Chr05	irgsp1_rep	three_prime_UTR	28987655	28988013	.	+	.	Parent=Os05t0582300-01
Chr05	irgsp1_rep	mRNA	28987092	28987648	.	-	.	ID=Os05t0582350-00;Name=Os05t0582350-00;Locus_id=Os05g0582350;Note=Hypothetical protein.;Transcript_evidence=EU943742 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0582350-00
Chr05	irgsp1_rep	five_prime_UTR	28987417	28987648	.	-	.	Parent=Os05t0582350-00
Chr05	irgsp1_rep	CDS	28987198	28987416	.	-	0	Parent=Os05t0582350-00
Chr05	irgsp1_rep	three_prime_UTR	28987092	28987197	.	-	.	Parent=Os05t0582350-00
Chr05	irgsp1_rep	mRNA	28989788	28995655	.	+	.	ID=Os05t0582400-01;Name=Os05t0582400-01;Locus_id=Os05g0582400;CGSNL Gene Symbol=MPK9;CGSNL Gene Name=MITOGEN-ACTIVATED PROTEIN KINASE 9;Oryzabase Gene Symbol Synonym(s)=OsMPK9;Oryzabase Gene Name Synonym(s)=mitogen-activated protein kinase 9;Note=Similar to Mitogen-activated protein kinase 9.;Transcript_evidence=AK069254 (DDBJ%2C Best hit);ORF_evidence=Q6L5D4 (UniProt);NIAS_FLcDNA=J023014J06;Oryzabase=22920;TENOR=Os05t0582400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	28989788	28990181	.	+	0	Parent=Os05t0582400-01
Chr05	irgsp1_rep	CDS	28990999	28991033	.	+	2	Parent=Os05t0582400-01
Chr05	irgsp1_rep	three_prime_UTR	28991034	28991404	.	+	.	Parent=Os05t0582400-01
Chr05	irgsp1_rep	three_prime_UTR	28992383	28992510	.	+	.	Parent=Os05t0582400-01
Chr05	irgsp1_rep	three_prime_UTR	28992599	28992658	.	+	.	Parent=Os05t0582400-01
Chr05	irgsp1_rep	three_prime_UTR	28993140	28993543	.	+	.	Parent=Os05t0582400-01
Chr05	irgsp1_rep	three_prime_UTR	28993687	28993898	.	+	.	Parent=Os05t0582400-01
Chr05	irgsp1_rep	three_prime_UTR	28994024	28994122	.	+	.	Parent=Os05t0582400-01
Chr05	irgsp1_rep	three_prime_UTR	28994669	28994838	.	+	.	Parent=Os05t0582400-01
Chr05	irgsp1_rep	three_prime_UTR	28994918	28995655	.	+	.	Parent=Os05t0582400-01
Chr05	irgsp1_rep	mRNA	28989869	28995376	.	-	.	ID=Os05t0582450-00;Name=Os05t0582450-00;Locus_id=Os05g0582450;Note=Hypothetical protein.;Transcript_evidence=tplb0059e09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0582450-00
Chr05	irgsp1_rep	five_prime_UTR	28995038	28995376	.	-	.	Parent=Os05t0582450-00
Chr05	irgsp1_rep	five_prime_UTR	28994924	28994977	.	-	.	Parent=Os05t0582450-00
Chr05	irgsp1_rep	five_prime_UTR	28994659	28994843	.	-	.	Parent=Os05t0582450-00
Chr05	irgsp1_rep	five_prime_UTR	28994004	28994114	.	-	.	Parent=Os05t0582450-00
Chr05	irgsp1_rep	five_prime_UTR	28993680	28993883	.	-	.	Parent=Os05t0582450-00
Chr05	irgsp1_rep	five_prime_UTR	28993387	28993535	.	-	.	Parent=Os05t0582450-00
Chr05	irgsp1_rep	five_prime_UTR	28993135	28993288	.	-	.	Parent=Os05t0582450-00
Chr05	irgsp1_rep	five_prime_UTR	28992586	28992651	.	-	.	Parent=Os05t0582450-00
Chr05	irgsp1_rep	five_prime_UTR	28992378	28992496	.	-	.	Parent=Os05t0582450-00
Chr05	irgsp1_rep	five_prime_UTR	28991158	28991401	.	-	.	Parent=Os05t0582450-00
Chr05	irgsp1_rep	CDS	28990997	28991157	.	-	0	Parent=Os05t0582450-00
Chr05	irgsp1_rep	CDS	28989993	28990179	.	-	1	Parent=Os05t0582450-00
Chr05	irgsp1_rep	three_prime_UTR	28989869	28989992	.	-	.	Parent=Os05t0582450-00
Chr05	irgsp1_rep	mRNA	28995973	28997546	.	+	.	ID=Os05t0582500-01;Name=Os05t0582500-01;Locus_id=Os05g0582500;CGSNL Gene Symbol=SCP29;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 29;Oryzabase Gene Symbol Synonym(s)=OsSCP29;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 29;Note=Peptidase S10%2C serine carboxypeptidase domain containing protein.;Transcript_evidence=AK070825 (DDBJ%2C Best hit);ORF_evidence=A2Y7Y2 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=J023064P05;Oryzabase=19209;TENOR=Os05t0582500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	28995973	28996094	.	+	.	Parent=Os05t0582500-01
Chr05	irgsp1_rep	CDS	28996095	28997435	.	+	0	Parent=Os05t0582500-01
Chr05	irgsp1_rep	three_prime_UTR	28997436	28997546	.	+	.	Parent=Os05t0582500-01
Chr05	irgsp1_rep	mRNA	29000212	29002044	.	+	.	ID=Os05t0582600-01;Name=Os05t0582600-01;Locus_id=Os05g0582600;CGSNL Gene Symbol=SCP30;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 30;Oryzabase Gene Symbol Synonym(s)=OsSCP30;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 30;Note=Peptidase S10%2C serine carboxypeptidase family protein.;Transcript_evidence=AK109766 (DDBJ%2C Best hit);ORF_evidence=A2Y7Y3 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=002-146-H10;Oryzabase=19210;Expression=AK109766;TENOR=Os05t0582600-01;KEGG=Os05t0582600-01
Chr05	irgsp1_rep	five_prime_UTR	29000212	29000259	.	+	.	Parent=Os05t0582600-01
Chr05	irgsp1_rep	CDS	29000260	29001615	.	+	0	Parent=Os05t0582600-01
Chr05	irgsp1_rep	three_prime_UTR	29001616	29002044	.	+	.	Parent=Os05t0582600-01
Chr05	irgsp1_rep	mRNA	29004127	29005828	.	+	.	ID=Os05t0582800-01;Name=Os05t0582800-01;Locus_id=Os05g0582800;CGSNL Gene Symbol=SCP31;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 31;Oryzabase Gene Symbol Synonym(s)=OsSCP31;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 31;Note=Peptidase S10%2C serine carboxypeptidase family protein.;Transcript_evidence=AK069785 (DDBJ%2C Best hit);ORF_evidence=NP_172953.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=J023031H02;Oryzabase=19211;Expression=AK069785;TENOR=Os05t0582800-01;KEGG=Os05t0582800-01 (EC:3.4.16.-)
Chr05	irgsp1_rep	five_prime_UTR	29004127	29004193	.	+	.	Parent=Os05t0582800-01
Chr05	irgsp1_rep	CDS	29004194	29005522	.	+	0	Parent=Os05t0582800-01
Chr05	irgsp1_rep	three_prime_UTR	29005523	29005828	.	+	.	Parent=Os05t0582800-01
Chr05	irgsp1_rep	mRNA	29004160	29005641	.	+	.	ID=Os05t0582800-02;Name=Os05t0582800-02;Locus_id=Os05g0582800;CGSNL Gene Symbol=SCP31;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 31;Oryzabase Gene Symbol Synonym(s)=OsSCP31;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 31;Note=Peptidase S10%2C serine carboxypeptidase family protein.;Transcript_evidence=AK105906 (DDBJ%2C Best hit);ORF_evidence=NP_172953.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=001-204-G02;Oryzabase=19211;Expression=AK105906;TENOR=Os05t0582800-02;KEGG=Os05t0582800-02 (EC:3.4.16.-)
Chr05	irgsp1_rep	five_prime_UTR	29004160	29004193	.	+	.	Parent=Os05t0582800-02
Chr05	irgsp1_rep	CDS	29004194	29005522	.	+	0	Parent=Os05t0582800-02
Chr05	irgsp1_rep	three_prime_UTR	29005523	29005641	.	+	.	Parent=Os05t0582800-02
Chr05	irgsp1_rep	mRNA	29010970	29013172	.	-	.	ID=Os05t0583000-01;Name=Os05t0583000-01;Locus_id=Os05g0583000;CGSNL Gene Symbol=WRKY8;CGSNL Gene Name=WRKY GENE 8;Oryzabase Gene Symbol Synonym(s)=OsWRKY8;Oryzabase Gene Name Synonym(s)=Rice WRKY gene8;Note=Similar to WRKY8.;Transcript_evidence=AK109568 (DDBJ%2C Best hit);ORF_evidence=Q5FZU0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);NIAS_FLcDNA=002-130-E04;Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6595;TENOR=Os05t0583000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	29013000	29013172	.	-	.	Parent=Os05t0583000-01
Chr05	irgsp1_rep	CDS	29012527	29012999	.	-	0	Parent=Os05t0583000-01
Chr05	irgsp1_rep	CDS	29011891	29012040	.	-	1	Parent=Os05t0583000-01
Chr05	irgsp1_rep	CDS	29011243	29011633	.	-	1	Parent=Os05t0583000-01
Chr05	irgsp1_rep	three_prime_UTR	29010970	29011242	.	-	.	Parent=Os05t0583000-01
Chr05	irgsp1_rep	mRNA	29012546	29013259	.	+	.	ID=Os05t0583050-01;Name=Os05t0583050-01;Locus_id=Os05g0583050;Note=Hypothetical gene.;Transcript_evidence=AK287625 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065068P11;TENOR=Os05t0583050-01;KEGG=Os05t0583050-01
Chr05	irgsp1_rep	five_prime_UTR	29012546	29012702	.	+	.	Parent=Os05t0583050-01
Chr05	irgsp1_rep	CDS	29012703	29013011	.	+	0	Parent=Os05t0583050-01
Chr05	irgsp1_rep	three_prime_UTR	29013012	29013259	.	+	.	Parent=Os05t0583050-01
Chr05	irgsp1_rep	mRNA	29019588	29023583	.	-	.	ID=Os05t0583075-00;Name=Os05t0583075-00;Locus_id=Os05g0583075;Note=Hypothetical protein.;Transcript_evidence=tplb0026a01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0583075-00
Chr05	irgsp1_rep	five_prime_UTR	29023202	29023583	.	-	.	Parent=Os05t0583075-00
Chr05	irgsp1_rep	CDS	29022926	29023201	.	-	0	Parent=Os05t0583075-00
Chr05	irgsp1_rep	three_prime_UTR	29021154	29022925	.	-	.	Parent=Os05t0583075-00
Chr05	irgsp1_rep	three_prime_UTR	29019588	29019711	.	-	.	Parent=Os05t0583075-00
Chr05	irgsp1_rep	mRNA	29021911	29023638	.	+	.	ID=Os05t0583100-01;Name=Os05t0583100-01;Locus_id=Os05g0583100;Note=HAT dimerisation domain containing protein.;Transcript_evidence=AK067574 (DDBJ%2C Best hit);ORF_evidence=B6SRN0 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein dimerization activity (GO:0046983);InterPro=HAT dimerisation (IPR008906),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J013110B04;Expression=AK067574;TENOR=Os05t0583100-01;KEGG=Os05t0583100-01
Chr05	irgsp1_rep	five_prime_UTR	29021911	29021912	.	+	.	Parent=Os05t0583100-01
Chr05	irgsp1_rep	CDS	29021913	29023334	.	+	0	Parent=Os05t0583100-01
Chr05	irgsp1_rep	three_prime_UTR	29023335	29023638	.	+	.	Parent=Os05t0583100-01
Chr05	irgsp1_rep	mRNA	29022434	29023533	.	+	.	ID=Os05t0583100-02;Name=Os05t0583100-02;Locus_id=Os05g0583100;Note=Similar to transposon protein.;Transcript_evidence=AK105085 (DDBJ%2C Best hit);ORF_evidence=B6SRN0 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein dimerization activity (GO:0046983);InterPro=HAT dimerisation (IPR008906),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=001-046-H09;Expression=AK105085;TENOR=Os05t0583100-02;KEGG=Os05t0583100-02
Chr05	irgsp1_rep	five_prime_UTR	29022434	29022434	.	+	.	Parent=Os05t0583100-02
Chr05	irgsp1_rep	CDS	29022435	29023334	.	+	0	Parent=Os05t0583100-02
Chr05	irgsp1_rep	three_prime_UTR	29023335	29023533	.	+	.	Parent=Os05t0583100-02
Chr05	irgsp1_rep	mRNA	29023618	29024098	.	+	.	ID=Os05t0583100-03;Name=Os05t0583100-03;Locus_id=Os05g0583100;Note=Hypothetical conserved gene.;Transcript_evidence=AK062631 (DDBJ%2C Best hit);ORF_evidence=B9FLT4 (UniProt);NIAS_FLcDNA=001-105-C09;Expression=AK062631;TENOR=Os05t0583100-03;KEGG=Os05t0583100-03
Chr05	irgsp1_rep	five_prime_UTR	29023618	29023761	.	+	.	Parent=Os05t0583100-03
Chr05	irgsp1_rep	CDS	29023762	29023995	.	+	0	Parent=Os05t0583100-03
Chr05	irgsp1_rep	three_prime_UTR	29023996	29024098	.	+	.	Parent=Os05t0583100-03
Chr05	irgsp1_rep	mRNA	29028867	29032772	.	+	.	ID=Os05t0583200-01;Name=Os05t0583200-01;Locus_id=Os05g0583200;Note=Zinc finger%2C BED-type predicted domain containing protein.;Transcript_evidence=AK102230 (DDBJ%2C Best hit);ORF_evidence=NP_001151544.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Zinc finger%2C BED-type predicted (IPR003656),HAT dimerisation (IPR008906),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J033088A04;Expression=AK102230;TENOR=Os05t0583200-01;KEGG=Os05t0583200-01
Chr05	irgsp1_rep	five_prime_UTR	29028867	29029180	.	+	.	Parent=Os05t0583200-01
Chr05	irgsp1_rep	five_prime_UTR	29030245	29030277	.	+	.	Parent=Os05t0583200-01
Chr05	irgsp1_rep	CDS	29030278	29032536	.	+	0	Parent=Os05t0583200-01
Chr05	irgsp1_rep	three_prime_UTR	29032537	29032772	.	+	.	Parent=Os05t0583200-01
Chr05	irgsp1_rep	mRNA	29035416	29036227	.	+	.	ID=Os05t0583400-01;Name=Os05t0583400-01;Locus_id=Os05g0583400;Note=Similar to Mitochondrial import receptor subunit TOM7 (Translocase of outer membrane 7 kDa subunit).;Transcript_evidence=AK101992 (DDBJ%2C Best hit);ORF_evidence=NP_001150221.1 (RefSeq);GO=Biological Process: intracellular protein transport (GO:0006886),Cellular Component: mitochondrial outer membrane (GO:0005741),Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450);InterPro=Mitochondrial outer membrane translocase complex%2C subunit Tom7 (IPR012621);NIAS_FLcDNA=J033079G16;Expression=AK101992;TENOR=Os05t0583400-01;KEGG=Os05t0583400-01
Chr05	irgsp1_rep	five_prime_UTR	29035416	29035519	.	+	.	Parent=Os05t0583400-01
Chr05	irgsp1_rep	CDS	29035520	29035777	.	+	0	Parent=Os05t0583400-01
Chr05	irgsp1_rep	three_prime_UTR	29035778	29036227	.	+	.	Parent=Os05t0583400-01
Chr05	irgsp1_rep	mRNA	29038549	29046309	.	+	.	ID=Os05t0583500-01;Name=Os05t0583500-01;Locus_id=Os05g0583500;Note=Phox-associated domain domain containing protein.;Transcript_evidence=AK100131 (DDBJ%2C Best hit);ORF_evidence=B9FIQ8 (UniProt);GO=Biological Process: cell communication (GO:0007154),Molecular Function: protein binding (GO:0005515),Molecular Function: phosphatidylinositol binding (GO:0035091);InterPro=Phox homologous domain (IPR001683),Phox-associated domain (IPR003114),Sorting nexin%2C C-terminal (IPR013937);NIAS_FLcDNA=J023010A16;Expression=AK100131;TENOR=Os05t0583500-01;KEGG=Os05t0583500-01
Chr05	irgsp1_rep	five_prime_UTR	29038549	29038721	.	+	.	Parent=Os05t0583500-01
Chr05	irgsp1_rep	CDS	29038722	29038839	.	+	0	Parent=Os05t0583500-01
Chr05	irgsp1_rep	CDS	29039618	29040023	.	+	2	Parent=Os05t0583500-01
Chr05	irgsp1_rep	CDS	29040122	29040299	.	+	1	Parent=Os05t0583500-01
Chr05	irgsp1_rep	CDS	29040740	29040879	.	+	0	Parent=Os05t0583500-01
Chr05	irgsp1_rep	CDS	29040955	29042200	.	+	1	Parent=Os05t0583500-01
Chr05	irgsp1_rep	CDS	29042278	29042378	.	+	0	Parent=Os05t0583500-01
Chr05	irgsp1_rep	CDS	29042496	29042640	.	+	1	Parent=Os05t0583500-01
Chr05	irgsp1_rep	CDS	29043081	29043149	.	+	0	Parent=Os05t0583500-01
Chr05	irgsp1_rep	CDS	29043236	29043281	.	+	0	Parent=Os05t0583500-01
Chr05	irgsp1_rep	CDS	29043375	29043748	.	+	2	Parent=Os05t0583500-01
Chr05	irgsp1_rep	CDS	29043948	29044027	.	+	0	Parent=Os05t0583500-01
Chr05	irgsp1_rep	CDS	29044139	29044274	.	+	1	Parent=Os05t0583500-01
Chr05	irgsp1_rep	CDS	29044525	29044684	.	+	0	Parent=Os05t0583500-01
Chr05	irgsp1_rep	CDS	29044908	29044990	.	+	2	Parent=Os05t0583500-01
Chr05	irgsp1_rep	CDS	29045743	29045871	.	+	0	Parent=Os05t0583500-01
Chr05	irgsp1_rep	three_prime_UTR	29045872	29046309	.	+	.	Parent=Os05t0583500-01
Chr05	irgsp1_rep	mRNA	29039820	29041908	.	+	.	ID=Os05t0583500-02;Name=Os05t0583500-02;Locus_id=Os05g0583500;Note=Hypothetical conserved gene.;Transcript_evidence=AK059334 (DDBJ%2C Best hit);ORF_evidence=B9FIQ8 (UniProt);InterPro=Phox-associated domain (IPR003114),PX-associated%2C sorting nexin 13 (IPR013996);NIAS_FLcDNA=001-026-A10;TENOR=Os05t0583500-02
Chr05	irgsp1_rep	five_prime_UTR	29039820	29039820	.	+	.	Parent=Os05t0583500-02
Chr05	irgsp1_rep	CDS	29039821	29040023	.	+	0	Parent=Os05t0583500-02
Chr05	irgsp1_rep	CDS	29040122	29040299	.	+	1	Parent=Os05t0583500-02
Chr05	irgsp1_rep	CDS	29040740	29040879	.	+	0	Parent=Os05t0583500-02
Chr05	irgsp1_rep	CDS	29040955	29041908	.	+	1	Parent=Os05t0583500-02
Chr05	irgsp1_rep	mRNA	29048746	29049580	.	-	.	ID=Os05t0583551-00;Name=Os05t0583551-00;Locus_id=Os05g0583551;Note=Hypothetical conserved gene.;Transcript_evidence=CT836474 (DDBJ%2C Best hit);ORF_evidence=Q2QZZ1 (UniProt);TENOR=Os05t0583551-00;KEGG=Os05t0583551-00
Chr05	irgsp1_rep	five_prime_UTR	29049152	29049580	.	-	.	Parent=Os05t0583551-00
Chr05	irgsp1_rep	CDS	29049047	29049151	.	-	0	Parent=Os05t0583551-00
Chr05	irgsp1_rep	three_prime_UTR	29048746	29049046	.	-	.	Parent=Os05t0583551-00
Chr05	irgsp1_rep	mRNA	29051330	29052434	.	+	.	ID=Os05t0583600-01;Name=Os05t0583600-01;Locus_id=Os05g0583600;CGSNL Gene Symbol=WRKY83;CGSNL Gene Name=WRKY GENE 83;Oryzabase Gene Symbol Synonym(s)=OsWRKY83;Note=Similar to ovate protein.;Transcript_evidence=AK108848 (DDBJ%2C Best hit);ORF_evidence=NP_001146934.1 (RefSeq);InterPro=Domain of unknown function DUF623 (IPR006458);NIAS_FLcDNA=002-152-A04;Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=9216;TENOR=Os05t0583600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	29051330	29052096	.	+	.	Parent=Os05t0583600-01
Chr05	irgsp1_rep	CDS	29052097	29052300	.	+	0	Parent=Os05t0583600-01
Chr05	irgsp1_rep	three_prime_UTR	29052301	29052434	.	+	.	Parent=Os05t0583600-01
Chr05	irgsp1_rep	mRNA	29061003	29062235	.	-	.	ID=Os05t0583950-00;Name=Os05t0583950-00;Locus_id=Os05g0583950;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B8AX70 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);TENOR=Os05t0583950-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	29061003	29062235	.	-	0	Parent=Os05t0583950-00
Chr05	irgsp1_rep	mRNA	29069323	29070559	.	-	.	ID=Os05t0584200-01;Name=Os05t0584200-01;Locus_id=Os05g0584200;RAP-DB Gene Symbol Synonym(s)=LEA8%2C OsLEA5;RAP-DB Gene Name Synonym(s)=LATE EMBRYOGENESIS ABUNDANT PROTEIN 8%2C late embryogenesis abundant protein 5;CGSNL Gene Symbol=LEA8;CGSNL Gene Name=LATE EMBRYOGENESIS ABUNDANT PROTEIN 8;Oryzabase Gene Symbol Synonym(s)=OsLEA8%2C OsLEA8a%2C OsLEA8b%2C OsLEA5%2C LEA5;Oryzabase Gene Name Synonym(s)=late embryogenesis abundant protein 8%2C late embryogenesis abundant protein 5;Note=Atypical late embryogenesis abundant (LEA) protein%2C Resistance to multiple abiotic stresses;Transcript_evidence=AK061818,JF776156 (Zhonghua 11);ORF_evidence=Q75HZ0;GO=Biological Process: response to desiccation (GO:0009269);InterPro=Immunoglobulin-like fold (IPR013783),Late embryogenesis abundant protein%2C LEA-14 (IPR004864),Water stress and hypersensitive response domain (IPR013990);NIAS_FLcDNA=001-040-B08;Manual Curation=May 2%2C 2017;Literature_PMID=22127413;Oryzabase=10176;TENOR=Os05t0584200-01
Chr05	irgsp1_rep	five_prime_UTR	29070080	29070559	.	-	.	Parent=Os05t0584200-01
Chr05	irgsp1_rep	CDS	29069874	29070079	.	-	0	Parent=Os05t0584200-01
Chr05	irgsp1_rep	CDS	29069512	29069761	.	-	1	Parent=Os05t0584200-01
Chr05	irgsp1_rep	three_prime_UTR	29069323	29069511	.	-	.	Parent=Os05t0584200-01
Chr05	irgsp1_rep	mRNA	29069325	29070379	.	-	.	ID=Os05t0584200-02;Name=Os05t0584200-02;Locus_id=Os05g0584200;CGSNL Gene Symbol=LEA8;CGSNL Gene Name=LATE EMBRYOGENESIS ABUNDANT PROTEIN 8;Oryzabase Gene Symbol Synonym(s)=OsLEA8%2C OsLEA8a%2C OsLEA8b%2C OsLEA5%2C LEA5;Oryzabase Gene Name Synonym(s)=late embryogenesis abundant protein 8%2C late embryogenesis abundant protein 5;Note=Similar to Late embryogenesis abundant protein Lea14-A.;Transcript_evidence=AK066062 (DDBJ%2C Best hit);ORF_evidence=C7E3V1 (UniProt);GO=Biological Process: response to desiccation (GO:0009269);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864),Immunoglobulin-like fold (IPR013783),Water stress and hypersensitive response domain (IPR013990);NIAS_FLcDNA=J013050C18;Oryzabase=10176;TENOR=Os05t0584200-02
Chr05	irgsp1_rep	five_prime_UTR	29070080	29070379	.	-	.	Parent=Os05t0584200-02
Chr05	irgsp1_rep	CDS	29069874	29070079	.	-	0	Parent=Os05t0584200-02
Chr05	irgsp1_rep	CDS	29069512	29069761	.	-	1	Parent=Os05t0584200-02
Chr05	irgsp1_rep	three_prime_UTR	29069325	29069511	.	-	.	Parent=Os05t0584200-02
Chr05	irgsp1_rep	mRNA	29071206	29072229	.	+	.	ID=Os05t0584300-01;Name=Os05t0584300-01;Locus_id=Os05g0584300;Oryzabase Gene Symbol Synonym(s)=5C300;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK063149 (DDBJ%2C Best hit);ORF_evidence=NP_001148221.1 (RefSeq);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=001-111-H05;Oryzabase=22776;Expression=AK063149;TENOR=Os05t0584300-01;KEGG=Os05t0584300-01
Chr05	irgsp1_rep	five_prime_UTR	29071206	29071229	.	+	.	Parent=Os05t0584300-01
Chr05	irgsp1_rep	CDS	29071230	29071973	.	+	0	Parent=Os05t0584300-01
Chr05	irgsp1_rep	three_prime_UTR	29071974	29072229	.	+	.	Parent=Os05t0584300-01
Chr05	irgsp1_rep	mRNA	29077046	29078529	.	-	.	ID=Os05t0584400-01;Name=Os05t0584400-01;Locus_id=Os05g0584400;Note=Conserved hypothetical protein.;Transcript_evidence=AK106631 (DDBJ%2C Best hit);ORF_evidence=Q6I593 (UniProt);NIAS_FLcDNA=002-113-D02;Expression=AK106631;TENOR=Os05t0584400-01;KEGG=Os05t0584400-01
Chr05	irgsp1_rep	five_prime_UTR	29078495	29078529	.	-	.	Parent=Os05t0584400-01
Chr05	irgsp1_rep	CDS	29078031	29078494	.	-	0	Parent=Os05t0584400-01
Chr05	irgsp1_rep	CDS	29077729	29077741	.	-	1	Parent=Os05t0584400-01
Chr05	irgsp1_rep	CDS	29077389	29077619	.	-	0	Parent=Os05t0584400-01
Chr05	irgsp1_rep	three_prime_UTR	29077046	29077388	.	-	.	Parent=Os05t0584400-01
Chr05	irgsp1_rep	mRNA	29077568	29078434	.	+	.	ID=Os05t0584450-00;Name=Os05t0584450-00;Locus_id=Os05g0584450;Note=Hypothetical gene.;Transcript_evidence=EU947126 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0584450-00;KEGG=Os05t0584450-00
Chr05	irgsp1_rep	five_prime_UTR	29077568	29077706	.	+	.	Parent=Os05t0584450-00
Chr05	irgsp1_rep	CDS	29077707	29078096	.	+	0	Parent=Os05t0584450-00
Chr05	irgsp1_rep	three_prime_UTR	29078097	29078434	.	+	.	Parent=Os05t0584450-00
Chr05	irgsp1_rep	mRNA	29094166	29098854	.	-	.	ID=Os05t0584600-01;Name=Os05t0584600-01;Locus_id=Os05g0584600;Note=Similar to ATP binding / nucleoside-triphosphatase/ nucleotide binding.;Transcript_evidence=AK107350 (DDBJ%2C Best hit);ORF_evidence=XP_002886363.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);NIAS_FLcDNA=002-126-H04;Expression=AK107350;TENOR=Os05t0584600-01;KEGG=Os05t0584600-01
Chr05	irgsp1_rep	five_prime_UTR	29098730	29098854	.	-	.	Parent=Os05t0584600-01
Chr05	irgsp1_rep	CDS	29098518	29098729	.	-	0	Parent=Os05t0584600-01
Chr05	irgsp1_rep	CDS	29097992	29098113	.	-	1	Parent=Os05t0584600-01
Chr05	irgsp1_rep	CDS	29097779	29097867	.	-	2	Parent=Os05t0584600-01
Chr05	irgsp1_rep	CDS	29097650	29097685	.	-	0	Parent=Os05t0584600-01
Chr05	irgsp1_rep	CDS	29097195	29097288	.	-	0	Parent=Os05t0584600-01
Chr05	irgsp1_rep	CDS	29096977	29097019	.	-	2	Parent=Os05t0584600-01
Chr05	irgsp1_rep	CDS	29096795	29096892	.	-	1	Parent=Os05t0584600-01
Chr05	irgsp1_rep	CDS	29096473	29096537	.	-	2	Parent=Os05t0584600-01
Chr05	irgsp1_rep	CDS	29095901	29096397	.	-	0	Parent=Os05t0584600-01
Chr05	irgsp1_rep	CDS	29095750	29095816	.	-	1	Parent=Os05t0584600-01
Chr05	irgsp1_rep	CDS	29095550	29095651	.	-	0	Parent=Os05t0584600-01
Chr05	irgsp1_rep	CDS	29094836	29095401	.	-	0	Parent=Os05t0584600-01
Chr05	irgsp1_rep	CDS	29094602	29094740	.	-	1	Parent=Os05t0584600-01
Chr05	irgsp1_rep	CDS	29094436	29094504	.	-	0	Parent=Os05t0584600-01
Chr05	irgsp1_rep	CDS	29094166	29094306	.	-	0	Parent=Os05t0584600-01
Chr05	irgsp1_rep	mRNA	29093561	29098854	.	-	.	ID=Os05t0584600-02;Name=Os05t0584600-02;Locus_id=Os05g0584600;Note=ATPase%2C AAA-type%2C core domain containing protein.;Transcript_evidence=AK072537 (DDBJ%2C Best hit);ORF_evidence=XP_002886363.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);NIAS_FLcDNA=J023133N21;Expression=AK072537;TENOR=Os05t0584600-02;KEGG=Os05t0584600-02
Chr05	irgsp1_rep	five_prime_UTR	29098730	29098854	.	-	.	Parent=Os05t0584600-02
Chr05	irgsp1_rep	CDS	29098518	29098729	.	-	0	Parent=Os05t0584600-02
Chr05	irgsp1_rep	CDS	29097992	29098113	.	-	1	Parent=Os05t0584600-02
Chr05	irgsp1_rep	CDS	29097779	29097867	.	-	2	Parent=Os05t0584600-02
Chr05	irgsp1_rep	CDS	29097650	29097685	.	-	0	Parent=Os05t0584600-02
Chr05	irgsp1_rep	CDS	29097195	29097288	.	-	0	Parent=Os05t0584600-02
Chr05	irgsp1_rep	CDS	29096977	29097019	.	-	2	Parent=Os05t0584600-02
Chr05	irgsp1_rep	CDS	29096795	29096892	.	-	1	Parent=Os05t0584600-02
Chr05	irgsp1_rep	CDS	29096473	29096537	.	-	2	Parent=Os05t0584600-02
Chr05	irgsp1_rep	CDS	29095901	29096397	.	-	0	Parent=Os05t0584600-02
Chr05	irgsp1_rep	CDS	29095750	29095816	.	-	1	Parent=Os05t0584600-02
Chr05	irgsp1_rep	CDS	29095550	29095651	.	-	0	Parent=Os05t0584600-02
Chr05	irgsp1_rep	CDS	29094836	29095401	.	-	0	Parent=Os05t0584600-02
Chr05	irgsp1_rep	CDS	29094602	29094740	.	-	1	Parent=Os05t0584600-02
Chr05	irgsp1_rep	CDS	29094436	29094504	.	-	0	Parent=Os05t0584600-02
Chr05	irgsp1_rep	CDS	29094052	29094306	.	-	0	Parent=Os05t0584600-02
Chr05	irgsp1_rep	CDS	29093856	29093969	.	-	0	Parent=Os05t0584600-02
Chr05	irgsp1_rep	three_prime_UTR	29093561	29093855	.	-	.	Parent=Os05t0584600-02
Chr05	irgsp1_rep	mRNA	29093854	29098730	.	+	.	ID=Os05t0584750-00;Name=Os05t0584750-00;Locus_id=Os05g0584750;Note=Hypothetical protein.;Transcript_evidence=tplb0025l23 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0584750-00
Chr05	irgsp1_rep	five_prime_UTR	29093854	29094024	.	+	.	Parent=Os05t0584750-00
Chr05	irgsp1_rep	five_prime_UTR	29094389	29094507	.	+	.	Parent=Os05t0584750-00
Chr05	irgsp1_rep	five_prime_UTR	29094608	29094689	.	+	.	Parent=Os05t0584750-00
Chr05	irgsp1_rep	five_prime_UTR	29094789	29094946	.	+	.	Parent=Os05t0584750-00
Chr05	irgsp1_rep	CDS	29094947	29095288	.	+	0	Parent=Os05t0584750-00
Chr05	irgsp1_rep	three_prime_UTR	29095289	29095595	.	+	.	Parent=Os05t0584750-00
Chr05	irgsp1_rep	three_prime_UTR	29095855	29096405	.	+	.	Parent=Os05t0584750-00
Chr05	irgsp1_rep	three_prime_UTR	29096482	29096521	.	+	.	Parent=Os05t0584750-00
Chr05	irgsp1_rep	three_prime_UTR	29096774	29097116	.	+	.	Parent=Os05t0584750-00
Chr05	irgsp1_rep	three_prime_UTR	29097956	29098112	.	+	.	Parent=Os05t0584750-00
Chr05	irgsp1_rep	three_prime_UTR	29098517	29098730	.	+	.	Parent=Os05t0584750-00
Chr05	irgsp1_rep	mRNA	29119644	29121883	.	+	.	ID=Os05t0584900-01;Name=Os05t0584900-01;Locus_id=Os05g0584900;Oryzabase Gene Symbol Synonym(s)=SLAC;Oryzabase Gene Name Synonym(s)=SLOW ANION CHANNEL;Note=Conserved hypothetical protein.;Transcript_evidence=AK105309 (DDBJ%2C Best hit);ORF_evidence=B9FIR4 (UniProt);NIAS_FLcDNA=001-117-C01;Oryzabase=21761;TENOR=Os05t0584900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	29119644	29119702	.	+	.	Parent=Os05t0584900-01
Chr05	irgsp1_rep	CDS	29119703	29120449	.	+	0	Parent=Os05t0584900-01
Chr05	irgsp1_rep	three_prime_UTR	29120450	29121883	.	+	.	Parent=Os05t0584900-01
Chr05	irgsp1_rep	mRNA	29126273	29126734	.	+	.	ID=Os05t0584950-00;Name=Os05t0584950-00;Locus_id=Os05g0584950;Note=Hypothetical gene.;Transcript_evidence=AK063606 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;Expression=AK063606;TENOR=Os05t0584950-00;KEGG=Os05t0584950-00
Chr05	irgsp1_rep	five_prime_UTR	29126273	29126274	.	+	.	Parent=Os05t0584950-00
Chr05	irgsp1_rep	CDS	29126275	29126673	.	+	0	Parent=Os05t0584950-00
Chr05	irgsp1_rep	three_prime_UTR	29126674	29126734	.	+	.	Parent=Os05t0584950-00
Chr05	irgsp1_rep	mRNA	29137464	29140080	.	+	.	ID=Os05t0585400-01;Name=Os05t0585400-01;Locus_id=Os05g0585400;Note=Similar to Protein ABIL1.;Transcript_evidence=AK067538 (DDBJ%2C Best hit);ORF_evidence=B6TCZ2 (UniProt);NIAS_FLcDNA=J013110G24;Expression=AK067538;TENOR=Os05t0585400-01;KEGG=Os05t0585400-01
Chr05	irgsp1_rep	five_prime_UTR	29137464	29137605	.	+	.	Parent=Os05t0585400-01
Chr05	irgsp1_rep	CDS	29137606	29137725	.	+	0	Parent=Os05t0585400-01
Chr05	irgsp1_rep	CDS	29137860	29137942	.	+	0	Parent=Os05t0585400-01
Chr05	irgsp1_rep	CDS	29138496	29138646	.	+	1	Parent=Os05t0585400-01
Chr05	irgsp1_rep	CDS	29138740	29138839	.	+	0	Parent=Os05t0585400-01
Chr05	irgsp1_rep	CDS	29138924	29139004	.	+	2	Parent=Os05t0585400-01
Chr05	irgsp1_rep	CDS	29139102	29139174	.	+	2	Parent=Os05t0585400-01
Chr05	irgsp1_rep	CDS	29139293	29139348	.	+	1	Parent=Os05t0585400-01
Chr05	irgsp1_rep	CDS	29139495	29139583	.	+	2	Parent=Os05t0585400-01
Chr05	irgsp1_rep	CDS	29139751	29139906	.	+	0	Parent=Os05t0585400-01
Chr05	irgsp1_rep	three_prime_UTR	29139907	29140080	.	+	.	Parent=Os05t0585400-01
Chr05	irgsp1_rep	mRNA	29137807	29139454	.	-	.	ID=Os05t0585450-01;Name=Os05t0585450-01;Locus_id=Os05g0585450;Note=Non-protein coding transcript.;Transcript_evidence=AK288849 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090075H09;TENOR=Os05t0585450-01
Chr05	irgsp1_rep	exon	29137807	29139454	.	-	.	Parent=Os05t0585450-01
Chr05	irgsp1_rep	mRNA	29140518	29144459	.	-	.	ID=Os05t0585500-01;Name=Os05t0585500-01;Locus_id=Os05g0585500;CGSNL Gene Symbol=CDPK15;CGSNL Gene Name=CALCIUM-DEPENDENT PROTEIN KINASE 15;Oryzabase Gene Symbol Synonym(s)=OsCDPK15%2C OsCPK15;Oryzabase Gene Name Synonym(s)=calcium-dependent protein kinase;Note=Similar to Calcium-dependent protein kinase.;Transcript_evidence=AK070346 (DDBJ%2C Best hit);ORF_evidence=A2ZVI7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Calcium-binding EF-hand (IPR002048),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),EF-hand-like domain (IPR011992),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J023054K20;Oryzabase=8066;Expression=AK070346;TENOR=Os05t0585500-01;KEGG=Os05t0585500-01 (EC:2.7.11.17)
Chr05	irgsp1_rep	five_prime_UTR	29144459	29144459	.	-	.	Parent=Os05t0585500-01
Chr05	irgsp1_rep	CDS	29143726	29144458	.	-	0	Parent=Os05t0585500-01
Chr05	irgsp1_rep	CDS	29143229	29143372	.	-	2	Parent=Os05t0585500-01
Chr05	irgsp1_rep	CDS	29142909	29143061	.	-	2	Parent=Os05t0585500-01
Chr05	irgsp1_rep	CDS	29142605	29142720	.	-	2	Parent=Os05t0585500-01
Chr05	irgsp1_rep	CDS	29142338	29142505	.	-	0	Parent=Os05t0585500-01
Chr05	irgsp1_rep	CDS	29141592	29141719	.	-	0	Parent=Os05t0585500-01
Chr05	irgsp1_rep	CDS	29141401	29141500	.	-	1	Parent=Os05t0585500-01
Chr05	irgsp1_rep	CDS	29140824	29140910	.	-	0	Parent=Os05t0585500-01
Chr05	irgsp1_rep	three_prime_UTR	29140518	29140823	.	-	.	Parent=Os05t0585500-01
Chr05	irgsp1_rep	mRNA	29143724	29144285	.	+	.	ID=Os05t0585601-00;Name=Os05t0585601-00;Locus_id=Os05g0585601;Note=Hypothetical protein.;Transcript_evidence=BT084847 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0585601-00
Chr05	irgsp1_rep	CDS	29143724	29144285	.	+	0	Parent=Os05t0585601-00
Chr05	irgsp1_rep	mRNA	29150232	29152272	.	-	.	ID=Os05t0585700-01;Name=Os05t0585700-01;Locus_id=Os05g0585700;Note=Helix-turn-helix%2C AraC type%2C subdomain 2 domain containing protein.;Transcript_evidence=AK107956 (DDBJ%2C Best hit);ORF_evidence=B8AX76 (UniProt);NIAS_FLcDNA=002-135-C04;Expression=AK107956;TENOR=Os05t0585700-01;KEGG=Os05t0585700-01
Chr05	irgsp1_rep	five_prime_UTR	29152228	29152272	.	-	.	Parent=Os05t0585700-01
Chr05	irgsp1_rep	CDS	29152066	29152227	.	-	0	Parent=Os05t0585700-01
Chr05	irgsp1_rep	CDS	29150591	29150778	.	-	0	Parent=Os05t0585700-01
Chr05	irgsp1_rep	CDS	29150382	29150475	.	-	1	Parent=Os05t0585700-01
Chr05	irgsp1_rep	three_prime_UTR	29150232	29150381	.	-	.	Parent=Os05t0585700-01
Chr05	irgsp1_rep	mRNA	29154625	29156888	.	+	.	ID=Os05t0585800-01;Name=Os05t0585800-01;Locus_id=Os05g0585800;Oryzabase Gene Symbol Synonym(s)=OsSTA161;Note=Protein of unknown function DUF1221 domain containing protein.;Transcript_evidence=AK107091 (DDBJ%2C Best hit);ORF_evidence=A2Y803 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Domain of unknown function DUF1221 (IPR010632),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=002-121-H01;Oryzabase=19446;Expression=AK107091;TENOR=Os05t0585800-01;KEGG=Os05t0585800-01
Chr05	irgsp1_rep	five_prime_UTR	29154625	29154683	.	+	.	Parent=Os05t0585800-01
Chr05	irgsp1_rep	CDS	29154684	29156783	.	+	0	Parent=Os05t0585800-01
Chr05	irgsp1_rep	three_prime_UTR	29156784	29156888	.	+	.	Parent=Os05t0585800-01
Chr05	irgsp1_rep	mRNA	29156958	29161630	.	-	.	ID=Os05t0585900-01;Name=Os05t0585900-01;Locus_id=Os05g0585900;Note=Mitochondrial carrier protein domain containing protein.;Transcript_evidence=AK098854 (DDBJ%2C Best hit),AK062575 (DDBJ%2C Best hit);ORF_evidence=B4F8B5 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial inner membrane (GO:0005743),Molecular Function: binding (GO:0005488);InterPro=Mitochondrial carrier protein (IPR002067),Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J013000H16,001-047-C04;Expression=AK098854;TENOR=Os05t0585900-01;KEGG=Os05t0585900-01
Chr05	irgsp1_rep	five_prime_UTR	29161478	29161630	.	-	.	Parent=Os05t0585900-01
Chr05	irgsp1_rep	CDS	29161311	29161477	.	-	0	Parent=Os05t0585900-01
Chr05	irgsp1_rep	CDS	29160071	29160119	.	-	1	Parent=Os05t0585900-01
Chr05	irgsp1_rep	CDS	29159640	29159803	.	-	0	Parent=Os05t0585900-01
Chr05	irgsp1_rep	CDS	29159375	29159412	.	-	1	Parent=Os05t0585900-01
Chr05	irgsp1_rep	CDS	29158168	29158280	.	-	2	Parent=Os05t0585900-01
Chr05	irgsp1_rep	CDS	29157966	29158079	.	-	0	Parent=Os05t0585900-01
Chr05	irgsp1_rep	CDS	29157536	29157874	.	-	0	Parent=Os05t0585900-01
Chr05	irgsp1_rep	CDS	29157352	29157435	.	-	0	Parent=Os05t0585900-01
Chr05	irgsp1_rep	three_prime_UTR	29156958	29157351	.	-	.	Parent=Os05t0585900-01
Chr05	irgsp1_rep	mRNA	29164084	29165467	.	-	.	ID=Os05t0586050-01;Name=Os05t0586050-01;Locus_id=Os05g0586050;Note=Protein of unknown function DUF247%2C plant domain containing protein.;Transcript_evidence=AK318590 (DDBJ%2C Best hit);ORF_evidence=B9FLU5 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);NIAS_FLcDNA=J100049K01;TENOR=Os05t0586050-01
Chr05	irgsp1_rep	five_prime_UTR	29165234	29165467	.	-	.	Parent=Os05t0586050-01
Chr05	irgsp1_rep	CDS	29164247	29165152	.	-	0	Parent=Os05t0586050-01
Chr05	irgsp1_rep	three_prime_UTR	29164084	29164246	.	-	.	Parent=Os05t0586050-01
Chr05	irgsp1_rep	mRNA	29200200	29205715	.	+	.	ID=Os05t0586200-01;Name=Os05t0586200-01;Locus_id=Os05g0586200;RAP-DB Gene Symbol Synonym(s)=OsGH3-5%2C OsGH3.5%2C OsJAR1%2C JAR1;RAP-DB Gene Name Synonym(s)=jasmonyl-L-isoleucine synthase 1%2C JASMONATE RESISTANT 1%2C GRETCHEN HAGEN 3.5;CGSNL Gene Symbol=JAR1;CGSNL Gene Name=JASMONYL-L-ISOLEUCINE SYNTHASE 1;Oryzabase Gene Symbol Synonym(s)=OsJAR1%2C OsGH3.5%2C GH3.5%2C OsGH3-5%2C GH3-5;Oryzabase Gene Name Synonym(s)=jasmonyl-L-isoleucine synthase 1%2C JASMONATE RESISTANT 1%2C GRETCHEN HAGEN 3.5;Note=Gretchen hagen 3 (GH3) family protein%2C PhytoChrome%2C Jasmonyl-L-isoleucine synthase%2C Jasmonate signaling%2C Wound response%2C Response to blast infection;Transcript_evidence=AK071721 (Genbank);ORF_evidence=Q6I581 (UniProt);InterPro=GH3 auxin-responsive promoter (IPR004993);NIAS_FLcDNA=J023108I12;Manual Curation=February 6%2C 2019;Literature_PMID=15856348,16488558,18266905,21619871;Oryzabase=9296;Expression=AK071721;TENOR=Os05t0586200-01;KEGG=Os05t0586200-01
Chr05	irgsp1_rep	five_prime_UTR	29200200	29200550	.	+	.	Parent=Os05t0586200-01
Chr05	irgsp1_rep	five_prime_UTR	29202769	29202826	.	+	.	Parent=Os05t0586200-01
Chr05	irgsp1_rep	CDS	29202827	29203107	.	+	0	Parent=Os05t0586200-01
Chr05	irgsp1_rep	CDS	29203213	29203314	.	+	1	Parent=Os05t0586200-01
Chr05	irgsp1_rep	CDS	29203514	29204331	.	+	1	Parent=Os05t0586200-01
Chr05	irgsp1_rep	CDS	29204919	29205463	.	+	2	Parent=Os05t0586200-01
Chr05	irgsp1_rep	three_prime_UTR	29205464	29205715	.	+	.	Parent=Os05t0586200-01
Chr05	irgsp1_rep	mRNA	29208619	29211341	.	-	.	ID=Os05t0586300-01;Name=Os05t0586300-01;Locus_id=Os05g0586300;RAP-DB Gene Symbol Synonym(s)=OsFAMA;Oryzabase Gene Symbol Synonym(s)=OsbHLH051%2C bHLH051%2C bHLH51%2C OsFAMA%2C FAMA;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 051;Note=Basic helix-loop-helix (bHLH) transcription factor%2C Subsidiary mother cell asymmetric division%2C Mature stoma differentiation;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Helix-loop-helix DNA-binding domain superfamily (IPR036638),Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598),ACT domain (IPR002912);Manual Curation=March 5%2C 2020;Literature_PMID=30825332;Oryzabase=15342;TENOR=Os05t0586300-00
Chr05	irgsp1_rep	CDS	29211161	29211341	.	-	0	Parent=Os05t0586300-01
Chr05	irgsp1_rep	CDS	29210879	29210922	.	-	2	Parent=Os05t0586300-01
Chr05	irgsp1_rep	CDS	29209442	29210083	.	-	0	Parent=Os05t0586300-01
Chr05	irgsp1_rep	CDS	29208811	29209332	.	-	0	Parent=Os05t0586300-01
Chr05	irgsp1_rep	CDS	29208619	29208708	.	-	0	Parent=Os05t0586300-01
Chr05	irgsp1_rep	mRNA	29208809	29209334	.	+	.	ID=Os05t0586350-00;Name=Os05t0586350-00;Locus_id=Os05g0586350;Note=Hypothetical protein.;Transcript_evidence=EU948983 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0586350-00
Chr05	irgsp1_rep	five_prime_UTR	29208809	29208810	.	+	.	Parent=Os05t0586350-00
Chr05	irgsp1_rep	CDS	29208811	29209334	.	+	0	Parent=Os05t0586350-00
Chr05	irgsp1_rep	mRNA	29213560	29219599	.	+	.	ID=Os05t0586400-01;Name=Os05t0586400-01;Locus_id=Os05g0586400;Note=Protein of unknown function DUF3133 domain containing protein.;Transcript_evidence=AK068482 (DDBJ%2C Best hit);ORF_evidence=B8AX77 (UniProt);InterPro=Protein of unknown function DUF3133 (IPR021480);NIAS_FLcDNA=J013153L21;Expression=AK068482;TENOR=Os05t0586400-01;KEGG=Os05t0586400-01
Chr05	irgsp1_rep	five_prime_UTR	29213560	29213744	.	+	.	Parent=Os05t0586400-01
Chr05	irgsp1_rep	five_prime_UTR	29213880	29213939	.	+	.	Parent=Os05t0586400-01
Chr05	irgsp1_rep	CDS	29213940	29215942	.	+	0	Parent=Os05t0586400-01
Chr05	irgsp1_rep	CDS	29216789	29216849	.	+	1	Parent=Os05t0586400-01
Chr05	irgsp1_rep	CDS	29216928	29217151	.	+	0	Parent=Os05t0586400-01
Chr05	irgsp1_rep	CDS	29219025	29219079	.	+	1	Parent=Os05t0586400-01
Chr05	irgsp1_rep	three_prime_UTR	29219080	29219599	.	+	.	Parent=Os05t0586400-01
Chr05	irgsp1_rep	mRNA	29221474	29224468	.	+	.	ID=Os05t0586500-01;Name=Os05t0586500-01;Locus_id=Os05g0586500;Oryzabase Gene Symbol Synonym(s)=OsGAT1;Oryzabase Gene Name Synonym(s)=gamma-aminobutyric acid transporter 1;Note=Amino acid transporter%2C transmembrane family protein.;Transcript_evidence=AK106883 (DDBJ%2C Best hit);ORF_evidence=XP_002303637.1 (RefSeq);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=002-118-F05;Oryzabase=18509;Expression=AK106883;TENOR=Os05t0586500-01;KEGG=Os05t0586500-01
Chr05	irgsp1_rep	five_prime_UTR	29221474	29221552	.	+	.	Parent=Os05t0586500-01
Chr05	irgsp1_rep	CDS	29221553	29221724	.	+	0	Parent=Os05t0586500-01
Chr05	irgsp1_rep	CDS	29221818	29222048	.	+	2	Parent=Os05t0586500-01
Chr05	irgsp1_rep	CDS	29222142	29222239	.	+	2	Parent=Os05t0586500-01
Chr05	irgsp1_rep	CDS	29223012	29223198	.	+	0	Parent=Os05t0586500-01
Chr05	irgsp1_rep	CDS	29223393	29223523	.	+	2	Parent=Os05t0586500-01
Chr05	irgsp1_rep	CDS	29223607	29224233	.	+	0	Parent=Os05t0586500-01
Chr05	irgsp1_rep	three_prime_UTR	29224234	29224468	.	+	.	Parent=Os05t0586500-01
Chr05	irgsp1_rep	mRNA	29225038	29227592	.	+	.	ID=Os05t0586600-01;Name=Os05t0586600-01;Locus_id=Os05g0586600;CGSNL Gene Symbol=SIG5;CGSNL Gene Name=SIGMA FACTOR 5;Oryzabase Gene Symbol Synonym(s)=OsSIG5%2C OsSig5%2C Os Sig5;Oryzabase Gene Name Synonym(s)=Sigma factor SIG5%2C SIG5 homolog;Note=Similar to SIGE (RNA polymerase sigma subunit E)%3B DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor.;Transcript_evidence=AK105697 (DDBJ%2C Best hit);ORF_evidence=B9FIR8 (UniProt);GO=Biological Process: transcription initiation%2C DNA-dependent (GO:0006352),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sigma factor activity (GO:0016987);InterPro=RNA polymerase sigma-70 factor (IPR000943),RNA polymerase sigma-70 region 3 (IPR007624),RNA polymerase sigma-70 region 4 (IPR007630),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),RNA polymerase sigma factor%2C region 3/4 (IPR013324),RNA polymerase sigma factor%2C region 2 (IPR013325);NIAS_FLcDNA=001-201-C12;Oryzabase=9717;Expression=AK105697;TENOR=Os05t0586600-01;KEGG=Os05t0586600-01
Chr05	irgsp1_rep	five_prime_UTR	29225038	29225150	.	+	.	Parent=Os05t0586600-01
Chr05	irgsp1_rep	CDS	29225151	29225538	.	+	0	Parent=Os05t0586600-01
Chr05	irgsp1_rep	CDS	29225643	29225757	.	+	2	Parent=Os05t0586600-01
Chr05	irgsp1_rep	CDS	29226395	29226500	.	+	1	Parent=Os05t0586600-01
Chr05	irgsp1_rep	CDS	29226586	29226849	.	+	0	Parent=Os05t0586600-01
Chr05	irgsp1_rep	CDS	29226934	29227128	.	+	0	Parent=Os05t0586600-01
Chr05	irgsp1_rep	three_prime_UTR	29227129	29227592	.	+	.	Parent=Os05t0586600-01
Chr05	irgsp1_rep	mRNA	29228254	29229250	.	+	.	ID=Os05t0586700-00;Name=Os05t0586700-00;Locus_id=Os05g0586700;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001056464.1 (RefSeq);TENOR=Os05t0586700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	29228254	29228628	.	+	0	Parent=Os05t0586700-00
Chr05	irgsp1_rep	CDS	29228705	29229250	.	+	0	Parent=Os05t0586700-00
Chr05	irgsp1_rep	mRNA	29228293	29229233	.	-	.	ID=Os05t0586800-00;Name=Os05t0586800-00;Locus_id=Os05g0586800;Note=Hypothetical protein.;Transcript_evidence=BT019246 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0586800-00
Chr05	irgsp1_rep	five_prime_UTR	29229088	29229233	.	-	.	Parent=Os05t0586800-00
Chr05	irgsp1_rep	CDS	29229007	29229087	.	-	0	Parent=Os05t0586800-00
Chr05	irgsp1_rep	CDS	29228685	29228917	.	-	0	Parent=Os05t0586800-00
Chr05	irgsp1_rep	CDS	29228293	29228616	.	-	1	Parent=Os05t0586800-00
Chr05	irgsp1_rep	mRNA	29236686	29240068	.	+	.	ID=Os05t0586900-01;Name=Os05t0586900-01;Locus_id=Os05g0586900;Note=Hypothetical conserved gene.;Transcript_evidence=AK241593 (DDBJ%2C Best hit);ORF_evidence=Q6L5C6 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J065183B01;TENOR=Os05t0586900-01;KEGG=Os05t0586900-01
Chr05	irgsp1_rep	five_prime_UTR	29236686	29236734	.	+	.	Parent=Os05t0586900-01
Chr05	irgsp1_rep	CDS	29236735	29239241	.	+	0	Parent=Os05t0586900-01
Chr05	irgsp1_rep	CDS	29239308	29239329	.	+	1	Parent=Os05t0586900-01
Chr05	irgsp1_rep	three_prime_UTR	29239330	29239385	.	+	.	Parent=Os05t0586900-01
Chr05	irgsp1_rep	three_prime_UTR	29239466	29240068	.	+	.	Parent=Os05t0586900-01
Chr05	irgsp1_rep	mRNA	29240182	29242422	.	-	.	ID=Os05t0587000-01;Name=Os05t0587000-01;Locus_id=Os05g0587000;Oryzabase Gene Symbol Synonym(s)=OsPGL26%2C PGL26;Oryzabase Gene Name Synonym(s)=Polygalacturonases-Like 26%2C PG-like 26;Note=Pectin lyase fold/virulence factor domain containing protein.;Transcript_evidence=AK287837 (DDBJ%2C Best hit);ORF_evidence=B6TDS0 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=J065191P16;Oryzabase=22303;TENOR=Os05t0587000-01;KEGG=Os05t0587000-01
Chr05	irgsp1_rep	five_prime_UTR	29242362	29242422	.	-	.	Parent=Os05t0587000-01
Chr05	irgsp1_rep	CDS	29242011	29242361	.	-	0	Parent=Os05t0587000-01
Chr05	irgsp1_rep	CDS	29241776	29241896	.	-	0	Parent=Os05t0587000-01
Chr05	irgsp1_rep	CDS	29241345	29241519	.	-	2	Parent=Os05t0587000-01
Chr05	irgsp1_rep	CDS	29241072	29241142	.	-	1	Parent=Os05t0587000-01
Chr05	irgsp1_rep	CDS	29240357	29240985	.	-	2	Parent=Os05t0587000-01
Chr05	irgsp1_rep	three_prime_UTR	29240182	29240356	.	-	.	Parent=Os05t0587000-01
Chr05	irgsp1_rep	mRNA	29244069	29249086	.	-	.	ID=Os05t0587100-01;Name=Os05t0587100-01;Locus_id=Os05g0587100;Oryzabase Gene Symbol Synonym(s)=OsPP2C52%2C PP2C52%2C OsPP80;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C52%2C protein phosphatase 2C 52%2C protein phosphatase 80;Note=Protein phosphatase 2C family protein.;Transcript_evidence=AK101645 (DDBJ%2C Best hit);ORF_evidence=E4MWG6 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J033055P12;Oryzabase=17925;Expression=AK101645;TENOR=Os05t0587100-01;KEGG=Os05t0587100-01
Chr05	irgsp1_rep	five_prime_UTR	29248900	29249086	.	-	.	Parent=Os05t0587100-01
Chr05	irgsp1_rep	five_prime_UTR	29248759	29248788	.	-	.	Parent=Os05t0587100-01
Chr05	irgsp1_rep	CDS	29248091	29248758	.	-	0	Parent=Os05t0587100-01
Chr05	irgsp1_rep	CDS	29246373	29246500	.	-	1	Parent=Os05t0587100-01
Chr05	irgsp1_rep	CDS	29246201	29246299	.	-	2	Parent=Os05t0587100-01
Chr05	irgsp1_rep	CDS	29245950	29246108	.	-	2	Parent=Os05t0587100-01
Chr05	irgsp1_rep	CDS	29245743	29245829	.	-	2	Parent=Os05t0587100-01
Chr05	irgsp1_rep	CDS	29245472	29245563	.	-	2	Parent=Os05t0587100-01
Chr05	irgsp1_rep	CDS	29245299	29245373	.	-	0	Parent=Os05t0587100-01
Chr05	irgsp1_rep	CDS	29244260	29244427	.	-	0	Parent=Os05t0587100-01
Chr05	irgsp1_rep	three_prime_UTR	29244069	29244259	.	-	.	Parent=Os05t0587100-01
Chr05	irgsp1_rep	mRNA	29251590	29255848	.	+	.	ID=Os05t0587200-01;Name=Os05t0587200-01;Locus_id=Os05g0587200;Oryzabase Gene Symbol Synonym(s)=OsSET23;Oryzabase Gene Name Synonym(s)=SET protein 23;Note=Conserved hypothetical protein.;Transcript_evidence=AK066321 (DDBJ%2C Best hit);ORF_evidence=B9FLU9 (UniProt);NIAS_FLcDNA=J013060L04;Oryzabase=13388;Expression=AK066321;TENOR=Os05t0587200-01;KEGG=Os05t0587200-01
Chr05	irgsp1_rep	five_prime_UTR	29251590	29251642	.	+	.	Parent=Os05t0587200-01
Chr05	irgsp1_rep	CDS	29251643	29251906	.	+	0	Parent=Os05t0587200-01
Chr05	irgsp1_rep	CDS	29252000	29252137	.	+	0	Parent=Os05t0587200-01
Chr05	irgsp1_rep	CDS	29252690	29252833	.	+	0	Parent=Os05t0587200-01
Chr05	irgsp1_rep	three_prime_UTR	29252834	29254287	.	+	.	Parent=Os05t0587200-01
Chr05	irgsp1_rep	three_prime_UTR	29254461	29254932	.	+	.	Parent=Os05t0587200-01
Chr05	irgsp1_rep	three_prime_UTR	29255022	29255219	.	+	.	Parent=Os05t0587200-01
Chr05	irgsp1_rep	three_prime_UTR	29255313	29255355	.	+	.	Parent=Os05t0587200-01
Chr05	irgsp1_rep	three_prime_UTR	29255454	29255848	.	+	.	Parent=Os05t0587200-01
Chr05	irgsp1_rep	mRNA	29257808	29262204	.	-	.	ID=Os05t0587300-01;Name=Os05t0587300-01;Locus_id=Os05g0587300;Note=Molecular chaperone%2C heat shock protein%2C Hsp40%2C DnaJ domain containing protein.;Transcript_evidence=AK120811 (DDBJ%2C Best hit);ORF_evidence=B6U8P1 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide TPR-1 (IPR001440),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide TPR2 (IPR013105),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J023014G11;Expression=AK120811;TENOR=Os05t0587300-01;KEGG=Os05t0587300-01
Chr05	irgsp1_rep	five_prime_UTR	29261915	29262204	.	-	.	Parent=Os05t0587300-01
Chr05	irgsp1_rep	CDS	29261022	29261914	.	-	0	Parent=Os05t0587300-01
Chr05	irgsp1_rep	CDS	29260204	29260405	.	-	1	Parent=Os05t0587300-01
Chr05	irgsp1_rep	CDS	29259913	29260097	.	-	0	Parent=Os05t0587300-01
Chr05	irgsp1_rep	CDS	29259444	29259831	.	-	1	Parent=Os05t0587300-01
Chr05	irgsp1_rep	three_prime_UTR	29259214	29259443	.	-	.	Parent=Os05t0587300-01
Chr05	irgsp1_rep	three_prime_UTR	29258851	29258957	.	-	.	Parent=Os05t0587300-01
Chr05	irgsp1_rep	three_prime_UTR	29257808	29258745	.	-	.	Parent=Os05t0587300-01
Chr05	irgsp1_rep	mRNA	29257818	29258232	.	-	.	ID=Os05t0587300-02;Name=Os05t0587300-02;Locus_id=Os05g0587300;Note=Hypothetical gene.;Transcript_evidence=AK058702 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-019-C06;Expression=AK058702;TENOR=Os05t0587300-02;KEGG=Os05t0587300-02
Chr05	irgsp1_rep	five_prime_UTR	29258159	29258232	.	-	.	Parent=Os05t0587300-02
Chr05	irgsp1_rep	CDS	29257940	29258158	.	-	0	Parent=Os05t0587300-02
Chr05	irgsp1_rep	three_prime_UTR	29257818	29257939	.	-	.	Parent=Os05t0587300-02
Chr05	irgsp1_rep	mRNA	29258603	29261635	.	+	.	ID=Os05t0587350-00;Name=Os05t0587350-00;Locus_id=Os05g0587350;Note=Hypothetical protein.;Transcript_evidence=tplb0021m04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0587350-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	29258603	29258752	.	+	.	Parent=Os05t0587350-00
Chr05	irgsp1_rep	five_prime_UTR	29258857	29258940	.	+	.	Parent=Os05t0587350-00
Chr05	irgsp1_rep	five_prime_UTR	29259201	29259388	.	+	.	Parent=Os05t0587350-00
Chr05	irgsp1_rep	five_prime_UTR	29259471	29259813	.	+	.	Parent=Os05t0587350-00
Chr05	irgsp1_rep	five_prime_UTR	29259896	29260084	.	+	.	Parent=Os05t0587350-00
Chr05	irgsp1_rep	five_prime_UTR	29260187	29260369	.	+	.	Parent=Os05t0587350-00
Chr05	irgsp1_rep	CDS	29260370	29260417	.	+	0	Parent=Os05t0587350-00
Chr05	irgsp1_rep	CDS	29261033	29261635	.	+	0	Parent=Os05t0587350-00
Chr05	irgsp1_rep	mRNA	29271392	29274798	.	-	.	ID=Os05t0587400-01;Name=Os05t0587400-01;Locus_id=Os05g0587400;Note=Prefoldin domain containing protein.;Transcript_evidence=AK102121 (DDBJ%2C Best hit);ORF_evidence=B8AX80 (UniProt);NIAS_FLcDNA=J033084N12;Expression=AK102121;TENOR=Os05t0587400-01;KEGG=Os05t0587400-01
Chr05	irgsp1_rep	five_prime_UTR	29274602	29274798	.	-	.	Parent=Os05t0587400-01
Chr05	irgsp1_rep	five_prime_UTR	29273859	29273910	.	-	.	Parent=Os05t0587400-01
Chr05	irgsp1_rep	CDS	29273681	29273858	.	-	0	Parent=Os05t0587400-01
Chr05	irgsp1_rep	CDS	29273514	29273597	.	-	2	Parent=Os05t0587400-01
Chr05	irgsp1_rep	CDS	29271700	29272460	.	-	2	Parent=Os05t0587400-01
Chr05	irgsp1_rep	three_prime_UTR	29271392	29271699	.	-	.	Parent=Os05t0587400-01
Chr05	irgsp1_rep	mRNA	29271262	29271673	.	-	.	ID=Os05t0587400-02;Name=Os05t0587400-02;Locus_id=Os05g0587400;Note=Non-protein coding transcript.;Transcript_evidence=AK063828 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-122-A11;TENOR=Os05t0587400-02
Chr05	irgsp1_rep	exon	29271262	29271673	.	-	.	Parent=Os05t0587400-02
Chr05	irgsp1_rep	mRNA	29281652	29281958	.	-	.	ID=Os05t0587600-01;Name=Os05t0587600-01;Locus_id=Os05g0587600;Note=Hypothetical conserved gene.;Transcript_evidence=AK059142 (DDBJ%2C Best hit);ORF_evidence=B9FIS0 (UniProt);NIAS_FLcDNA=001-023-A07;Expression=AK059142;TENOR=Os05t0587600-01;KEGG=Os05t0587600-01
Chr05	irgsp1_rep	CDS	29281869	29281958	.	-	0	Parent=Os05t0587600-01
Chr05	irgsp1_rep	three_prime_UTR	29281652	29281868	.	-	.	Parent=Os05t0587600-01
Chr05	irgsp1_rep	mRNA	29284596	29286850	.	-	.	ID=Os05t0587700-01;Name=Os05t0587700-01;Locus_id=Os05g0587700;Oryzabase Gene Symbol Synonym(s)=OsTBL17%2C TBL17;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 17;Note=Conserved hypothetical protein.;Transcript_evidence=AK064730 (DDBJ%2C Best hit);ORF_evidence=B9FIS0 (UniProt);NIAS_FLcDNA=002-120-A12;Oryzabase=21472;TENOR=Os05t0587700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	29286777	29286850	.	-	.	Parent=Os05t0587700-01
Chr05	irgsp1_rep	CDS	29286294	29286776	.	-	0	Parent=Os05t0587700-01
Chr05	irgsp1_rep	three_prime_UTR	29285602	29286293	.	-	.	Parent=Os05t0587700-01
Chr05	irgsp1_rep	three_prime_UTR	29285323	29285498	.	-	.	Parent=Os05t0587700-01
Chr05	irgsp1_rep	three_prime_UTR	29285086	29285241	.	-	.	Parent=Os05t0587700-01
Chr05	irgsp1_rep	three_prime_UTR	29284596	29284994	.	-	.	Parent=Os05t0587700-01
Chr05	irgsp1_rep	mRNA	29285317	29286583	.	+	.	ID=Os05t0587800-00;Name=Os05t0587800-00;Locus_id=Os05g0587800;Note=Non-protein coding transcript.;Transcript_evidence=EU969467 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0587800-00
Chr05	irgsp1_rep	exon	29285317	29285489	.	+	.	Parent=Os05t0587800-00
Chr05	irgsp1_rep	exon	29285657	29285862	.	+	.	Parent=Os05t0587800-00
Chr05	irgsp1_rep	exon	29286326	29286583	.	+	.	Parent=Os05t0587800-00
Chr05	irgsp1_rep	mRNA	29294340	29297211	.	-	.	ID=Os05t0588100-00;Name=Os05t0588100-00;Locus_id=Os05g0588100;Note=Similar to Biostress-resistance-related protein (Fragment).;Transcript_evidence=BT034572 (DDBJ);ORF_evidence=Q84VJ1 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Phospholipase/carboxylesterase/thioesterase (IPR003140);TENOR=Os05t0588100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	29297057	29297211	.	-	0	Parent=Os05t0588100-00
Chr05	irgsp1_rep	CDS	29295699	29295735	.	-	1	Parent=Os05t0588100-00
Chr05	irgsp1_rep	CDS	29295424	29295493	.	-	0	Parent=Os05t0588100-00
Chr05	irgsp1_rep	CDS	29295178	29295282	.	-	2	Parent=Os05t0588100-00
Chr05	irgsp1_rep	CDS	29294782	29294932	.	-	2	Parent=Os05t0588100-00
Chr05	irgsp1_rep	CDS	29294340	29294676	.	-	1	Parent=Os05t0588100-00
Chr05	irgsp1_rep	mRNA	29300928	29304267	.	-	.	ID=Os05t0588200-01;Name=Os05t0588200-01;Locus_id=Os05g0588200;RAP-DB Gene Symbol Synonym(s)=OsPTD1;RAP-DB Gene Name Synonym(s)=Parting Dancers 1;CGSNL Gene Symbol=PTD1;CGSNL Gene Name=PARTING DANCER 1;Oryzabase Gene Symbol Synonym(s)=OsPTD1;Oryzabase Gene Name Synonym(s)=Parting Dancer 1;Note=Meiotic component%2C Regulation of crossover formation;Transcript_evidence=AK109323;ORF_evidence=Q6L5B5;InterPro=RuvA domain 2-like (IPR010994);NIAS_FLcDNA=002-188-H05;Manual Curation=April 22%2C 2019;Literature_PMID=30589140;Oryzabase=23006;Expression=AK109323;TENOR=Os05t0588200-01;KEGG=Os05t0588200-01;Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737), plasma membrane (GO:0005886)
Chr05	irgsp1_rep	five_prime_UTR	29304144	29304267	.	-	.	Parent=Os05t0588200-01
Chr05	irgsp1_rep	CDS	29304074	29304143	.	-	0	Parent=Os05t0588200-01
Chr05	irgsp1_rep	CDS	29303313	29303434	.	-	2	Parent=Os05t0588200-01
Chr05	irgsp1_rep	CDS	29303146	29303234	.	-	0	Parent=Os05t0588200-01
Chr05	irgsp1_rep	CDS	29302980	29303075	.	-	1	Parent=Os05t0588200-01
Chr05	irgsp1_rep	CDS	29302811	29302905	.	-	1	Parent=Os05t0588200-01
Chr05	irgsp1_rep	CDS	29302679	29302719	.	-	2	Parent=Os05t0588200-01
Chr05	irgsp1_rep	CDS	29302508	29302591	.	-	0	Parent=Os05t0588200-01
Chr05	irgsp1_rep	CDS	29301888	29302037	.	-	0	Parent=Os05t0588200-01
Chr05	irgsp1_rep	three_prime_UTR	29301882	29301887	.	-	.	Parent=Os05t0588200-01
Chr05	irgsp1_rep	three_prime_UTR	29300928	29301221	.	-	.	Parent=Os05t0588200-01
Chr05	irgsp1_rep	mRNA	29307170	29307793	.	-	.	ID=Os05t0588225-00;Name=Os05t0588225-00;Locus_id=Os05g0588225;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os05t0588225-00
Chr05	irgsp1_rep	CDS	29307170	29307793	.	-	0	Parent=Os05t0588225-00
Chr05	irgsp1_rep	mRNA	29308010	29308759	.	+	.	ID=Os05t0588250-00;Name=Os05t0588250-00;Locus_id=Os05g0588250;Oryzabase Gene Symbol Synonym(s)=OsJ_RLL1;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;Oryzabase=11293;TENOR=Os05t0588250-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	29308010	29308759	.	+	0	Parent=Os05t0588250-00
Chr05	irgsp1_rep	mRNA	29310712	29311669	.	+	.	ID=Os05t0588300-01;Name=Os05t0588300-01;Locus_id=Os05g0588300;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK060360 (DDBJ%2C Best hit);ORF_evidence=D6N3G3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-008-H06;Expression=AK060360;TENOR=Os05t0588300-01;KEGG=Os05t0588300-01
Chr05	irgsp1_rep	five_prime_UTR	29310712	29310714	.	+	.	Parent=Os05t0588300-01
Chr05	irgsp1_rep	CDS	29310715	29311326	.	+	0	Parent=Os05t0588300-01
Chr05	irgsp1_rep	three_prime_UTR	29311327	29311669	.	+	.	Parent=Os05t0588300-01
Chr05	irgsp1_rep	mRNA	29313057	29314868	.	-	.	ID=Os05t0588500-01;Name=Os05t0588500-01;Locus_id=Os05g0588500;RAP-DB Gene Symbol Synonym(s)=SWEET5%2C OsSWEET5;RAP-DB Gene Name Synonym(s)=SWEET5;CGSNL Gene Symbol=SWEET5;CGSNL Gene Name=SWEET5;Oryzabase Gene Symbol Synonym(s)=OsSWEET5;Note=Sugar transporter%2C Galactose transport;Transcript_evidence=AK069614;ORF_evidence=Q6L568;NIAS_FLcDNA=J023023E05;Manual Curation=March 4%2C 2015;Literature_PMID=24709840;Oryzabase=9095;Expression=AK069614;TENOR=Os05t0588500-01;KEGG=Os05t0588500-01
Chr05	irgsp1_rep	five_prime_UTR	29314534	29314868	.	-	.	Parent=Os05t0588500-01
Chr05	irgsp1_rep	CDS	29314488	29314533	.	-	0	Parent=Os05t0588500-01
Chr05	irgsp1_rep	CDS	29313895	29314310	.	-	2	Parent=Os05t0588500-01
Chr05	irgsp1_rep	CDS	29313657	29313776	.	-	0	Parent=Os05t0588500-01
Chr05	irgsp1_rep	CDS	29313370	29313501	.	-	0	Parent=Os05t0588500-01
Chr05	irgsp1_rep	three_prime_UTR	29313057	29313369	.	-	.	Parent=Os05t0588500-01
Chr05	irgsp1_rep	mRNA	29313924	29314369	.	+	.	ID=Os05t0588550-01;Name=Os05t0588550-01;Locus_id=Os05g0588550;Note=Hypothetical gene.;Transcript_evidence=AK242459 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J080097M12;TENOR=Os05t0588550-01;KEGG=Os05t0588550-01
Chr05	irgsp1_rep	five_prime_UTR	29313924	29313924	.	+	.	Parent=Os05t0588550-01
Chr05	irgsp1_rep	CDS	29313925	29314170	.	+	0	Parent=Os05t0588550-01
Chr05	irgsp1_rep	three_prime_UTR	29314171	29314369	.	+	.	Parent=Os05t0588550-01
Chr05	irgsp1_rep	mRNA	29317649	29324873	.	-	.	ID=Os05t0588700-01;Name=Os05t0588700-01;Locus_id=Os05g0588700;Note=Paired amphipathic helix domain containing protein.;Transcript_evidence=AK100256 (DDBJ%2C Best hit);ORF_evidence=B9FIS5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634);InterPro=Paired amphipathic helix (IPR003822),Histone deacetylase interacting (IPR013194);NIAS_FLcDNA=J023061J06;Expression=AK100256;TENOR=Os05t0588700-01;KEGG=Os05t0588700-01
Chr05	irgsp1_rep	five_prime_UTR	29324751	29324873	.	-	.	Parent=Os05t0588700-01
Chr05	irgsp1_rep	five_prime_UTR	29324468	29324497	.	-	.	Parent=Os05t0588700-01
Chr05	irgsp1_rep	CDS	29324295	29324467	.	-	0	Parent=Os05t0588700-01
Chr05	irgsp1_rep	CDS	29324061	29324214	.	-	1	Parent=Os05t0588700-01
Chr05	irgsp1_rep	CDS	29323865	29323966	.	-	0	Parent=Os05t0588700-01
Chr05	irgsp1_rep	CDS	29323665	29323793	.	-	0	Parent=Os05t0588700-01
Chr05	irgsp1_rep	CDS	29323271	29323466	.	-	0	Parent=Os05t0588700-01
Chr05	irgsp1_rep	CDS	29321141	29321295	.	-	2	Parent=Os05t0588700-01
Chr05	irgsp1_rep	CDS	29320913	29321064	.	-	0	Parent=Os05t0588700-01
Chr05	irgsp1_rep	CDS	29320690	29320796	.	-	1	Parent=Os05t0588700-01
Chr05	irgsp1_rep	CDS	29320336	29320596	.	-	2	Parent=Os05t0588700-01
Chr05	irgsp1_rep	CDS	29319930	29320228	.	-	2	Parent=Os05t0588700-01
Chr05	irgsp1_rep	CDS	29319347	29319658	.	-	0	Parent=Os05t0588700-01
Chr05	irgsp1_rep	CDS	29318974	29319044	.	-	0	Parent=Os05t0588700-01
Chr05	irgsp1_rep	CDS	29318729	29318867	.	-	1	Parent=Os05t0588700-01
Chr05	irgsp1_rep	CDS	29318461	29318613	.	-	0	Parent=Os05t0588700-01
Chr05	irgsp1_rep	CDS	29318091	29318191	.	-	0	Parent=Os05t0588700-01
Chr05	irgsp1_rep	CDS	29317942	29318014	.	-	1	Parent=Os05t0588700-01
Chr05	irgsp1_rep	three_prime_UTR	29317649	29317941	.	-	.	Parent=Os05t0588700-01
Chr05	irgsp1_rep	mRNA	29318638	29321297	.	+	.	ID=Os05t0588750-00;Name=Os05t0588750-00;Locus_id=Os05g0588750;Note=Non-protein coding transcript.;Transcript_evidence=tplb0034b11 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os05t0588750-00
Chr05	irgsp1_rep	exon	29318638	29318894	.	+	.	Parent=Os05t0588750-00
Chr05	irgsp1_rep	exon	29319302	29319598	.	+	.	Parent=Os05t0588750-00
Chr05	irgsp1_rep	exon	29319907	29320604	.	+	.	Parent=Os05t0588750-00
Chr05	irgsp1_rep	exon	29320697	29320803	.	+	.	Parent=Os05t0588750-00
Chr05	irgsp1_rep	exon	29320916	29321056	.	+	.	Parent=Os05t0588750-00
Chr05	irgsp1_rep	exon	29321133	29321297	.	+	.	Parent=Os05t0588750-00
Chr05	irgsp1_rep	mRNA	29327061	29330145	.	+	.	ID=Os05t0588800-01;Name=Os05t0588800-01;Locus_id=Os05g0588800;Note=Similar to Yarrowia lipolytica Chromosome D of strain CLIB99 of Yarrowia lipolytica.;Transcript_evidence=AK111042 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-175-B05;Expression=AK111042;TENOR=Os05t0588800-01;KEGG=Os05t0588800-01
Chr05	irgsp1_rep	five_prime_UTR	29327061	29327270	.	+	.	Parent=Os05t0588800-01
Chr05	irgsp1_rep	five_prime_UTR	29328313	29328330	.	+	.	Parent=Os05t0588800-01
Chr05	irgsp1_rep	CDS	29328331	29328444	.	+	0	Parent=Os05t0588800-01
Chr05	irgsp1_rep	CDS	29329241	29329426	.	+	0	Parent=Os05t0588800-01
Chr05	irgsp1_rep	three_prime_UTR	29329427	29329645	.	+	.	Parent=Os05t0588800-01
Chr05	irgsp1_rep	three_prime_UTR	29329778	29330145	.	+	.	Parent=Os05t0588800-01
Chr05	irgsp1_rep	mRNA	29327064	29334853	.	+	.	ID=Os05t0588800-02;Name=Os05t0588800-02;Locus_id=Os05g0588800;Note=Similar to Yarrowia lipolytica Chromosome D of strain CLIB99 of Yarrowia lipolytica.;Transcript_evidence=AK073047 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033009G15;Expression=AK073047;TENOR=Os05t0588800-02;KEGG=Os05t0588800-02
Chr05	irgsp1_rep	five_prime_UTR	29327064	29327270	.	+	.	Parent=Os05t0588800-02
Chr05	irgsp1_rep	five_prime_UTR	29328313	29328330	.	+	.	Parent=Os05t0588800-02
Chr05	irgsp1_rep	CDS	29328331	29328444	.	+	0	Parent=Os05t0588800-02
Chr05	irgsp1_rep	CDS	29329241	29329426	.	+	0	Parent=Os05t0588800-02
Chr05	irgsp1_rep	three_prime_UTR	29329427	29329645	.	+	.	Parent=Os05t0588800-02
Chr05	irgsp1_rep	three_prime_UTR	29329778	29330007	.	+	.	Parent=Os05t0588800-02
Chr05	irgsp1_rep	three_prime_UTR	29332063	29332464	.	+	.	Parent=Os05t0588800-02
Chr05	irgsp1_rep	three_prime_UTR	29332576	29332804	.	+	.	Parent=Os05t0588800-02
Chr05	irgsp1_rep	three_prime_UTR	29332895	29333296	.	+	.	Parent=Os05t0588800-02
Chr05	irgsp1_rep	three_prime_UTR	29333390	29333540	.	+	.	Parent=Os05t0588800-02
Chr05	irgsp1_rep	three_prime_UTR	29334176	29334853	.	+	.	Parent=Os05t0588800-02
Chr05	irgsp1_rep	mRNA	29328976	29330799	.	+	.	ID=Os05t0588800-03;Name=Os05t0588800-03;Locus_id=Os05g0588800;Note=Hypothetical gene.;Transcript_evidence=AK287895 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065210C10;TENOR=Os05t0588800-03;KEGG=Os05t0588800-03
Chr05	irgsp1_rep	five_prime_UTR	29328976	29329174	.	+	.	Parent=Os05t0588800-03
Chr05	irgsp1_rep	CDS	29329175	29329426	.	+	0	Parent=Os05t0588800-03
Chr05	irgsp1_rep	three_prime_UTR	29329427	29329607	.	+	.	Parent=Os05t0588800-03
Chr05	irgsp1_rep	three_prime_UTR	29329750	29330799	.	+	.	Parent=Os05t0588800-03
Chr05	irgsp1_rep	mRNA	29329185	29330766	.	-	.	ID=Os05t0588850-00;Name=Os05t0588850-00;Locus_id=Os05g0588850;CGSNL Gene Name=AAA-ATPASE 7;Oryzabase Gene Name Synonym(s)=OsAAA-ATPase7%2C OsAAA-ATPase 7%2C AAA-ATPase7;Note=ATPase%2C AAA-type%2C core domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001174549.1 (RefSeq);GO=Molecular Function: ATP binding (GO:0005524);InterPro=ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);Oryzabase=23152;TENOR=Os05t0588850-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	29330066	29330766	.	-	0	Parent=Os05t0588850-00
Chr05	irgsp1_rep	CDS	29329750	29329885	.	-	1	Parent=Os05t0588850-00
Chr05	irgsp1_rep	CDS	29329185	29329607	.	-	0	Parent=Os05t0588850-00
Chr05	irgsp1_rep	mRNA	29331773	29333125	.	-	.	ID=Os05t0588900-01;Name=Os05t0588900-01;Locus_id=Os05g0588900;Note=Similar to mitochondrial chaperone BCS1.;Transcript_evidence=AK241645 (DDBJ%2C Best hit);ORF_evidence=NP_001147824.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);NIAS_FLcDNA=J065189N07;TENOR=Os05t0588900-01;KEGG=Os05t0588900-01
Chr05	irgsp1_rep	CDS	29332547	29333125	.	-	0	Parent=Os05t0588900-01
Chr05	irgsp1_rep	CDS	29331968	29332429	.	-	0	Parent=Os05t0588900-01
Chr05	irgsp1_rep	three_prime_UTR	29331773	29331967	.	-	.	Parent=Os05t0588900-01
Chr05	irgsp1_rep	mRNA	29336113	29340316	.	+	.	ID=Os05t0589000-01;Name=Os05t0589000-01;Locus_id=Os05g0589000;Note=Uncharacterised protein family UPF0121 domain containing protein.;Transcript_evidence=AK061980 (DDBJ%2C Best hit);ORF_evidence=B8AX91 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Uncharacterised protein family UPF0121 (IPR005344);NIAS_FLcDNA=001-043-A08;TENOR=Os05t0589000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	29336113	29336216	.	+	.	Parent=Os05t0589000-01
Chr05	irgsp1_rep	CDS	29336217	29336408	.	+	0	Parent=Os05t0589000-01
Chr05	irgsp1_rep	CDS	29337096	29337210	.	+	0	Parent=Os05t0589000-01
Chr05	irgsp1_rep	CDS	29337303	29337412	.	+	2	Parent=Os05t0589000-01
Chr05	irgsp1_rep	CDS	29338550	29338675	.	+	0	Parent=Os05t0589000-01
Chr05	irgsp1_rep	CDS	29338775	29338895	.	+	0	Parent=Os05t0589000-01
Chr05	irgsp1_rep	CDS	29338990	29339074	.	+	2	Parent=Os05t0589000-01
Chr05	irgsp1_rep	CDS	29339179	29339292	.	+	1	Parent=Os05t0589000-01
Chr05	irgsp1_rep	CDS	29339386	29339425	.	+	1	Parent=Os05t0589000-01
Chr05	irgsp1_rep	CDS	29339842	29339994	.	+	0	Parent=Os05t0589000-01
Chr05	irgsp1_rep	three_prime_UTR	29339995	29340316	.	+	.	Parent=Os05t0589000-01
Chr05	irgsp1_rep	mRNA	29336135	29340355	.	+	.	ID=Os05t0589000-02;Name=Os05t0589000-02;Locus_id=Os05g0589000;Note=Uncharacterised protein family UPF0121 domain containing protein.;Transcript_evidence=AK099181 (DDBJ%2C Best hit);ORF_evidence=B8AX91 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Uncharacterised protein family UPF0121 (IPR005344);NIAS_FLcDNA=J023099O12;TENOR=Os05t0589000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	29336135	29336216	.	+	.	Parent=Os05t0589000-02
Chr05	irgsp1_rep	CDS	29336217	29336408	.	+	0	Parent=Os05t0589000-02
Chr05	irgsp1_rep	CDS	29337096	29337210	.	+	0	Parent=Os05t0589000-02
Chr05	irgsp1_rep	CDS	29337303	29337412	.	+	2	Parent=Os05t0589000-02
Chr05	irgsp1_rep	CDS	29338550	29338675	.	+	0	Parent=Os05t0589000-02
Chr05	irgsp1_rep	CDS	29338775	29338895	.	+	0	Parent=Os05t0589000-02
Chr05	irgsp1_rep	CDS	29338990	29339074	.	+	2	Parent=Os05t0589000-02
Chr05	irgsp1_rep	CDS	29339179	29339292	.	+	1	Parent=Os05t0589000-02
Chr05	irgsp1_rep	CDS	29339386	29339425	.	+	1	Parent=Os05t0589000-02
Chr05	irgsp1_rep	CDS	29339842	29339994	.	+	0	Parent=Os05t0589000-02
Chr05	irgsp1_rep	three_prime_UTR	29339995	29340355	.	+	.	Parent=Os05t0589000-02
Chr05	irgsp1_rep	mRNA	29341476	29344660	.	+	.	ID=Os05t0589200-01;Name=Os05t0589200-01;Locus_id=Os05g0589200;CGSNL Gene Symbol=SIG3;CGSNL Gene Name=SIGMA FACTOR 3;Oryzabase Gene Symbol Synonym(s)=OsSIG3;Oryzabase Gene Name Synonym(s)=Sigma factor SIG3;Note=RNA polymerase sigma factor%2C region 2 domain containing protein.;Transcript_evidence=AK068666 (DDBJ%2C Best hit);ORF_evidence=NP_001105185.1 (RefSeq);GO=Biological Process: transcription initiation%2C DNA-dependent (GO:0006352),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sigma factor activity (GO:0016987);InterPro=RNA polymerase sigma-70 region 3 (IPR007624),RNA polymerase sigma-70 region 2 (IPR007627),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),RNA polymerase sigma factor%2C region 3/4 (IPR013324),RNA polymerase sigma factor%2C region 2 (IPR013325);NIAS_FLcDNA=J013163M14;Oryzabase=9722;TENOR=Os05t0589200-01
Chr05	irgsp1_rep	five_prime_UTR	29341476	29341510	.	+	.	Parent=Os05t0589200-01
Chr05	irgsp1_rep	CDS	29341511	29341625	.	+	0	Parent=Os05t0589200-01
Chr05	irgsp1_rep	CDS	29341774	29341925	.	+	2	Parent=Os05t0589200-01
Chr05	irgsp1_rep	CDS	29341999	29342553	.	+	0	Parent=Os05t0589200-01
Chr05	irgsp1_rep	CDS	29343913	29344140	.	+	0	Parent=Os05t0589200-01
Chr05	irgsp1_rep	CDS	29344229	29344369	.	+	0	Parent=Os05t0589200-01
Chr05	irgsp1_rep	CDS	29344459	29344660	.	+	0	Parent=Os05t0589200-01
Chr05	irgsp1_rep	mRNA	29347289	29348581	.	-	.	ID=Os05t0589400-01;Name=Os05t0589400-01;Locus_id=Os05g0589400;Oryzabase Gene Symbol Synonym(s)=R2R3-MYB;Oryzabase Gene Name Synonym(s)=MYB-related transcription factor;Note=Similar to I-box binding factor (Fragment).;Transcript_evidence=AK059813 (DDBJ%2C Best hit);ORF_evidence=Q9AVV5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=006-205-B05;Oryzabase=16183;Expression=AK059813;TENOR=Os05t0589400-01;KEGG=Os05t0589400-01
Chr05	irgsp1_rep	five_prime_UTR	29348491	29348581	.	-	.	Parent=Os05t0589400-01
Chr05	irgsp1_rep	CDS	29348139	29348490	.	-	0	Parent=Os05t0589400-01
Chr05	irgsp1_rep	CDS	29347844	29348049	.	-	2	Parent=Os05t0589400-01
Chr05	irgsp1_rep	CDS	29347513	29347767	.	-	0	Parent=Os05t0589400-01
Chr05	irgsp1_rep	three_prime_UTR	29347289	29347512	.	-	.	Parent=Os05t0589400-01
Chr05	irgsp1_rep	mRNA	29347252	29348519	.	-	.	ID=Os05t0589400-02;Name=Os05t0589400-02;Locus_id=Os05g0589400;Oryzabase Gene Symbol Synonym(s)=R2R3-MYB;Oryzabase Gene Name Synonym(s)=MYB-related transcription factor;Note=Similar to I-box binding factor (Fragment).;Transcript_evidence=AK068595 (DDBJ%2C Best hit);ORF_evidence=Q9AVV5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J013154K05;Oryzabase=16183;Expression=AK068595;TENOR=Os05t0589400-02;KEGG=Os05t0589400-02
Chr05	irgsp1_rep	five_prime_UTR	29348491	29348519	.	-	.	Parent=Os05t0589400-02
Chr05	irgsp1_rep	CDS	29348139	29348490	.	-	0	Parent=Os05t0589400-02
Chr05	irgsp1_rep	CDS	29347844	29348049	.	-	2	Parent=Os05t0589400-02
Chr05	irgsp1_rep	CDS	29347513	29347767	.	-	0	Parent=Os05t0589400-02
Chr05	irgsp1_rep	three_prime_UTR	29347252	29347512	.	-	.	Parent=Os05t0589400-02
Chr05	irgsp1_rep	mRNA	29347278	29348617	.	+	.	ID=Os05t0589500-01;Name=Os05t0589500-01;Locus_id=Os05g0589500;Note=Hypothetical protein.;Transcript_evidence=AK105542 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-127-H11;Expression=AK105542;TENOR=Os05t0589500-01;KEGG=Os05t0589500-01
Chr05	irgsp1_rep	five_prime_UTR	29347278	29347823	.	+	.	Parent=Os05t0589500-01
Chr05	irgsp1_rep	CDS	29347824	29348108	.	+	0	Parent=Os05t0589500-01
Chr05	irgsp1_rep	three_prime_UTR	29348109	29348617	.	+	.	Parent=Os05t0589500-01
Chr05	irgsp1_rep	mRNA	29355978	29359193	.	+	.	ID=Os05t0589600-01;Name=Os05t0589600-01;Locus_id=Os05g0589600;Note=Similar to Nuclear RNA binding protein B (Fragment).;Transcript_evidence=AK073438 (DDBJ%2C Best hit);ORF_evidence=NP_001148572.1 (RefSeq);InterPro=Hyaluronan/mRNA-binding protein (IPR006861),Stm1%2C N-terminal (IPR019084);NIAS_FLcDNA=J033046L01;Expression=AK073438;TENOR=Os05t0589600-01;KEGG=Os05t0589600-01
Chr05	irgsp1_rep	five_prime_UTR	29355978	29356199	.	+	.	Parent=Os05t0589600-01
Chr05	irgsp1_rep	CDS	29356200	29356377	.	+	0	Parent=Os05t0589600-01
Chr05	irgsp1_rep	CDS	29356531	29356942	.	+	2	Parent=Os05t0589600-01
Chr05	irgsp1_rep	CDS	29357048	29357192	.	+	1	Parent=Os05t0589600-01
Chr05	irgsp1_rep	CDS	29358269	29358427	.	+	0	Parent=Os05t0589600-01
Chr05	irgsp1_rep	CDS	29358508	29358567	.	+	0	Parent=Os05t0589600-01
Chr05	irgsp1_rep	CDS	29358674	29358871	.	+	0	Parent=Os05t0589600-01
Chr05	irgsp1_rep	three_prime_UTR	29358872	29359193	.	+	.	Parent=Os05t0589600-01
Chr05	irgsp1_rep	mRNA	29359930	29364139	.	-	.	ID=Os05t0589700-01;Name=Os05t0589700-01;Locus_id=Os05g0589700;CGSNL Gene Symbol=RLCK191;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 191;Oryzabase Gene Symbol Synonym(s)=OsRLCK191;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 191;Note=Similar to cDNA%2C clone: J090072P03%2C full insert sequence.;Transcript_evidence=AK068031 (DDBJ%2C Best hit);ORF_evidence=B7F9R5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J013130D08;Oryzabase=18891;TENOR=Os05t0589700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	29363900	29364139	.	-	.	Parent=Os05t0589700-01
Chr05	irgsp1_rep	CDS	29363722	29363899	.	-	0	Parent=Os05t0589700-01
Chr05	irgsp1_rep	CDS	29363442	29363581	.	-	2	Parent=Os05t0589700-01
Chr05	irgsp1_rep	CDS	29363230	29363321	.	-	0	Parent=Os05t0589700-01
Chr05	irgsp1_rep	CDS	29362072	29363128	.	-	1	Parent=Os05t0589700-01
Chr05	irgsp1_rep	three_prime_UTR	29361208	29362071	.	-	.	Parent=Os05t0589700-01
Chr05	irgsp1_rep	three_prime_UTR	29360535	29361113	.	-	.	Parent=Os05t0589700-01
Chr05	irgsp1_rep	three_prime_UTR	29359930	29360432	.	-	.	Parent=Os05t0589700-01
Chr05	irgsp1_rep	mRNA	29379785	29381499	.	-	.	ID=Os05t0590000-01;Name=Os05t0590000-01;Locus_id=Os05g0590000;Oryzabase Gene Name Synonym(s)=Peptidase A1 domain containing protein;Note=Peptidase A1 domain containing protein.;Transcript_evidence=AK070159 (DDBJ%2C Best hit);ORF_evidence=XP_002892074.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J023046M06;Oryzabase=20454;TENOR=Os05t0590000-01
Chr05	irgsp1_rep	five_prime_UTR	29381409	29381499	.	-	.	Parent=Os05t0590000-01
Chr05	irgsp1_rep	CDS	29379963	29381408	.	-	0	Parent=Os05t0590000-01
Chr05	irgsp1_rep	three_prime_UTR	29379785	29379962	.	-	.	Parent=Os05t0590000-01
Chr05	irgsp1_rep	mRNA	29379785	29381423	.	-	.	ID=Os05t0590000-02;Name=Os05t0590000-02;Locus_id=Os05g0590000;Oryzabase Gene Name Synonym(s)=Peptidase A1 domain containing protein;Note=Peptidase A1 domain containing protein.;Transcript_evidence=AK103957 (DDBJ%2C Best hit);ORF_evidence=XP_002892074.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=001-015-B02;Oryzabase=20454;TENOR=Os05t0590000-02
Chr05	irgsp1_rep	five_prime_UTR	29381409	29381423	.	-	.	Parent=Os05t0590000-02
Chr05	irgsp1_rep	CDS	29379963	29381408	.	-	0	Parent=Os05t0590000-02
Chr05	irgsp1_rep	three_prime_UTR	29379785	29379962	.	-	.	Parent=Os05t0590000-02
Chr05	irgsp1_rep	mRNA	29382087	29384471	.	+	.	ID=Os05t0590100-01;Name=Os05t0590100-01;Locus_id=Os05g0590100;Note=Ubiquitin domain containing protein.;Transcript_evidence=AK072823 (DDBJ%2C Best hit);ORF_evidence=NP_566076.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Phosphatidylinositol 3-/4-kinase%2C catalytic (IPR000403),Ubiquitin (IPR000626),Ubiquitin supergroup (IPR019955);NIAS_FLcDNA=J023139A09;Expression=AK072823;TENOR=Os05t0590100-01;KEGG=Os05t0590100-01
Chr05	irgsp1_rep	five_prime_UTR	29382087	29382399	.	+	.	Parent=Os05t0590100-01
Chr05	irgsp1_rep	CDS	29382400	29383761	.	+	0	Parent=Os05t0590100-01
Chr05	irgsp1_rep	CDS	29383845	29384243	.	+	0	Parent=Os05t0590100-01
Chr05	irgsp1_rep	three_prime_UTR	29384244	29384471	.	+	.	Parent=Os05t0590100-01
Chr05	irgsp1_rep	mRNA	29385916	29389665	.	+	.	ID=Os05t0590201-01;Name=Os05t0590201-01;Locus_id=Os05g0590201;Note=Hypothetical gene.;Transcript_evidence=AK288417 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090031J18;TENOR=Os05t0590201-01;KEGG=Os05t0590201-01
Chr05	irgsp1_rep	five_prime_UTR	29385916	29386277	.	+	.	Parent=Os05t0590201-01
Chr05	irgsp1_rep	CDS	29386278	29386856	.	+	0	Parent=Os05t0590201-01
Chr05	irgsp1_rep	three_prime_UTR	29386857	29389665	.	+	.	Parent=Os05t0590201-01
Chr05	irgsp1_rep	mRNA	29386050	29388154	.	-	.	ID=Os05t0590300-01;Name=Os05t0590300-01;Locus_id=Os05g0590300;Note=Alpha/beta hydrolase fold-1 domain containing protein.;Transcript_evidence=AK067788 (DDBJ%2C Best hit);ORF_evidence=A2Y832 (UniProt);NIAS_FLcDNA=J013121J06;Expression=AK067788;TENOR=Os05t0590300-01;KEGG=Os05t0590300-01
Chr05	irgsp1_rep	five_prime_UTR	29388095	29388154	.	-	.	Parent=Os05t0590300-01
Chr05	irgsp1_rep	CDS	29387703	29388094	.	-	0	Parent=Os05t0590300-01
Chr05	irgsp1_rep	CDS	29386290	29386797	.	-	1	Parent=Os05t0590300-01
Chr05	irgsp1_rep	three_prime_UTR	29386050	29386289	.	-	.	Parent=Os05t0590300-01
Chr05	irgsp1_rep	mRNA	29402832	29404717	.	+	.	ID=Os05t0590550-01;Name=Os05t0590550-01;Locus_id=Os05g0590550;Note=Similar to OSIGBa0132E09-OSIGBa0108L24.6 protein.;Transcript_evidence=AK288748 (DDBJ%2C Best hit);ORF_evidence=Q01HZ3 (UniProt);NIAS_FLcDNA=J090064M14;TENOR=Os05t0590550-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	29402832	29402836	.	+	.	Parent=Os05t0590550-01
Chr05	irgsp1_rep	CDS	29402837	29402947	.	+	0	Parent=Os05t0590550-01
Chr05	irgsp1_rep	three_prime_UTR	29402948	29404717	.	+	.	Parent=Os05t0590550-01
Chr05	irgsp1_rep	mRNA	29455559	29457153	.	+	.	ID=Os05t0591400-01;Name=Os05t0591400-01;Locus_id=Os05g0591400;RAP-DB Gene Symbol Synonym(s)=OsEBS;RAP-DB Gene Name Synonym(s)=enhancing biomass and spikelet number;CGSNL Gene Symbol=EBS;CGSNL Gene Name=ENHANCING BIOMASS AND SPIKELET NUMBER;Oryzabase Gene Symbol Synonym(s)=OsEBS;Oryzabase Gene Name Synonym(s)=enhancing biomass and spikelet number;Note=Control of plant biomass and spikelet number;Transcript_evidence=AK120015;ORF_evidence=Q6L4S6;InterPro=Heat shock protein 70 family (IPR013126),Heat shock protein 70%2C conserved site (IPR018181);NIAS_FLcDNA=002-186-B06;Manual Curation=February 24%2C 2016;Literature_PMID=23924074;Oryzabase=13614;Expression=AK120015;TENOR=Os05t0591400-01;KEGG=Os05t0591400-01
Chr05	irgsp1_rep	five_prime_UTR	29455559	29455590	.	+	.	Parent=Os05t0591400-01
Chr05	irgsp1_rep	CDS	29455591	29455630	.	+	0	Parent=Os05t0591400-01
Chr05	irgsp1_rep	CDS	29455734	29457007	.	+	2	Parent=Os05t0591400-01
Chr05	irgsp1_rep	three_prime_UTR	29457008	29457153	.	+	.	Parent=Os05t0591400-01
Chr05	irgsp1_rep	mRNA	29457606	29458607	.	-	.	ID=Os05t0591450-00;Name=Os05t0591450-00;Locus_id=Os05g0591450;Note=Hypothetical conserved gene.;Transcript_evidence=EU960437 (DDBJ);ORF_evidence=B9FIT2 (UniProt);TENOR=Os05t0591450-00;KEGG=Os05t0591450-00
Chr05	irgsp1_rep	CDS	29458188	29458607	.	-	0	Parent=Os05t0591450-00
Chr05	irgsp1_rep	three_prime_UTR	29457849	29458187	.	-	.	Parent=Os05t0591450-00
Chr05	irgsp1_rep	three_prime_UTR	29457606	29457723	.	-	.	Parent=Os05t0591450-00
Chr05	irgsp1_rep	mRNA	29460032	29464249	.	+	.	ID=Os05t0591500-01;Name=Os05t0591500-01;Locus_id=Os05g0591500;Note=Similar to Cysteine synthase.;Transcript_evidence=AK073891 (DDBJ%2C Best hit);ORF_evidence=Q9XEA7 (UniProt);NIAS_FLcDNA=J033075A18;TENOR=Os05t0591500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	29460032	29460367	.	+	.	Parent=Os05t0591500-01
Chr05	irgsp1_rep	five_prime_UTR	29460460	29460707	.	+	.	Parent=Os05t0591500-01
Chr05	irgsp1_rep	five_prime_UTR	29460965	29461025	.	+	.	Parent=Os05t0591500-01
Chr05	irgsp1_rep	five_prime_UTR	29461857	29462526	.	+	.	Parent=Os05t0591500-01
Chr05	irgsp1_rep	CDS	29462527	29462658	.	+	0	Parent=Os05t0591500-01
Chr05	irgsp1_rep	three_prime_UTR	29462659	29464249	.	+	.	Parent=Os05t0591500-01
Chr05	irgsp1_rep	mRNA	29466185	29466905	.	+	.	ID=Os05t0591550-00;Name=Os05t0591550-00;Locus_id=Os05g0591550;Note=Conserved hypothetical protein.;Transcript_evidence=CT836458 (DDBJ%2C Best hit);ORF_evidence=B8AE80 (UniProt);TENOR=Os05t0591550-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	29466185	29466665	.	+	.	Parent=Os05t0591550-00
Chr05	irgsp1_rep	CDS	29466718	29466882	.	+	0	Parent=Os05t0591550-00
Chr05	irgsp1_rep	three_prime_UTR	29466883	29466905	.	+	.	Parent=Os05t0591550-00
Chr05	irgsp1_rep	mRNA	29470011	29474250	.	+	.	ID=Os05t0591600-01;Name=Os05t0591600-01;Locus_id=Os05g0591600;CGSNL Gene Symbol=LOGL8;CGSNL Gene Name=LONELY GUY LIKE PHOSPHORIBOHYDROLASE 8;Oryzabase Gene Symbol Synonym(s)=LOGL8;Oryzabase Gene Name Synonym(s)=LOG LIKE phosphoribohydrolase 8%2C LOG LIKE 8;Note=Similar to Carboxy-lyase.;Transcript_evidence=AK242659 (DDBJ%2C Best hit);ORF_evidence=B6TUD2 (UniProt);InterPro=Cytokinin riboside 5&apos%3B-monophosphate phosphoribohydrolase LOG (IPR005269);NIAS_FLcDNA=J090027P03;Oryzabase=9853;TENOR=Os05t0591600-01;KEGG=Os05t0591600-01
Chr05	irgsp1_rep	five_prime_UTR	29470011	29470085	.	+	.	Parent=Os05t0591600-01
Chr05	irgsp1_rep	CDS	29470086	29470340	.	+	0	Parent=Os05t0591600-01
Chr05	irgsp1_rep	CDS	29471101	29471198	.	+	0	Parent=Os05t0591600-01
Chr05	irgsp1_rep	CDS	29471808	29471838	.	+	1	Parent=Os05t0591600-01
Chr05	irgsp1_rep	CDS	29472550	29472649	.	+	0	Parent=Os05t0591600-01
Chr05	irgsp1_rep	CDS	29472774	29472844	.	+	2	Parent=Os05t0591600-01
Chr05	irgsp1_rep	CDS	29473583	29473726	.	+	0	Parent=Os05t0591600-01
Chr05	irgsp1_rep	CDS	29473898	29473999	.	+	0	Parent=Os05t0591600-01
Chr05	irgsp1_rep	three_prime_UTR	29474000	29474250	.	+	.	Parent=Os05t0591600-01
Chr05	irgsp1_rep	mRNA	29470193	29471264	.	-	.	ID=Os05t0591700-00;Name=Os05t0591700-00;Locus_id=Os05g0591700;Note=Hypothetical protein.;Transcript_evidence=AK374302 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0591700-00
Chr05	irgsp1_rep	five_prime_UTR	29471191	29471264	.	-	.	Parent=Os05t0591700-00
Chr05	irgsp1_rep	CDS	29471008	29471190	.	-	0	Parent=Os05t0591700-00
Chr05	irgsp1_rep	CDS	29470304	29470393	.	-	0	Parent=Os05t0591700-00
Chr05	irgsp1_rep	three_prime_UTR	29470193	29470303	.	-	.	Parent=Os05t0591700-00
Chr05	irgsp1_rep	mRNA	29482551	29485096	.	+	.	ID=Os05t0591800-00;Name=Os05t0591800-00;Locus_id=Os05g0591800;CGSNL Gene Symbol=RLCK192;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 192;Oryzabase Gene Symbol Synonym(s)=OsEnS-81%2C OsRLCK192;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 81%2C Receptor-like Cytoplasmic Kinase 192;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=BT053986 (DDBJ);ORF_evidence=A2Y839 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18398;TENOR=Os05t0591800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	29482551	29482838	.	+	0	Parent=Os05t0591800-00
Chr05	irgsp1_rep	CDS	29483674	29483812	.	+	0	Parent=Os05t0591800-00
Chr05	irgsp1_rep	CDS	29483906	29484039	.	+	2	Parent=Os05t0591800-00
Chr05	irgsp1_rep	CDS	29484172	29484295	.	+	0	Parent=Os05t0591800-00
Chr05	irgsp1_rep	CDS	29484625	29484719	.	+	2	Parent=Os05t0591800-00
Chr05	irgsp1_rep	three_prime_UTR	29484720	29485096	.	+	.	Parent=Os05t0591800-00
Chr05	irgsp1_rep	mRNA	29482632	29484973	.	-	.	ID=Os05t0591850-00;Name=Os05t0591850-00;Locus_id=Os05g0591850;Note=Hypothetical protein.;Transcript_evidence=tplb0027d05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os05t0591850-00
Chr05	irgsp1_rep	CDS	29484659	29484973	.	-	0	Parent=Os05t0591850-00
Chr05	irgsp1_rep	three_prime_UTR	29484655	29484658	.	-	.	Parent=Os05t0591850-00
Chr05	irgsp1_rep	three_prime_UTR	29484170	29484339	.	-	.	Parent=Os05t0591850-00
Chr05	irgsp1_rep	three_prime_UTR	29483918	29484030	.	-	.	Parent=Os05t0591850-00
Chr05	irgsp1_rep	three_prime_UTR	29483698	29483828	.	-	.	Parent=Os05t0591850-00
Chr05	irgsp1_rep	three_prime_UTR	29482632	29482856	.	-	.	Parent=Os05t0591850-00
Chr05	irgsp1_rep	mRNA	29490250	29492176	.	-	.	ID=Os05t0591900-01;Name=Os05t0591900-01;Locus_id=Os05g0591900;Note=Hypothetical gene.;Transcript_evidence=AK107074 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-121-F02;Expression=AK107074;TENOR=Os05t0591900-01;KEGG=Os05t0591900-01
Chr05	irgsp1_rep	five_prime_UTR	29490718	29492176	.	-	.	Parent=Os05t0591900-01
Chr05	irgsp1_rep	CDS	29490253	29490717	.	-	0	Parent=Os05t0591900-01
Chr05	irgsp1_rep	three_prime_UTR	29490250	29490252	.	-	.	Parent=Os05t0591900-01
Chr05	irgsp1_rep	mRNA	29491675	29492135	.	-	.	ID=Os05t0591900-02;Name=Os05t0591900-02;Locus_id=Os05g0591900;Note=Non-protein coding transcript.;Transcript_evidence=AK062360 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-101-H04;TENOR=Os05t0591900-02
Chr05	irgsp1_rep	exon	29491675	29492135	.	-	.	Parent=Os05t0591900-02
Chr05	irgsp1_rep	mRNA	29486800	29491001	.	-	.	ID=Os05t0591900-03;Name=Os05t0591900-03;Locus_id=Os05g0591900;Note=Similar to Hypersensitive-induced response protein.;Transcript_evidence=AK072258 (DDBJ%2C Best hit);ORF_evidence=B6TBQ1 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Band 7 protein (IPR001107),Stomatin (IPR001972);NIAS_FLcDNA=J023008K16;TENOR=Os05t0591900-03
Chr05	irgsp1_rep	five_prime_UTR	29490762	29491001	.	-	.	Parent=Os05t0591900-03
Chr05	irgsp1_rep	five_prime_UTR	29488555	29488586	.	-	.	Parent=Os05t0591900-03
Chr05	irgsp1_rep	CDS	29488366	29488554	.	-	0	Parent=Os05t0591900-03
Chr05	irgsp1_rep	CDS	29487877	29487997	.	-	0	Parent=Os05t0591900-03
Chr05	irgsp1_rep	CDS	29487556	29487744	.	-	2	Parent=Os05t0591900-03
Chr05	irgsp1_rep	CDS	29487089	29487456	.	-	2	Parent=Os05t0591900-03
Chr05	irgsp1_rep	three_prime_UTR	29486800	29487088	.	-	.	Parent=Os05t0591900-03
Chr05	irgsp1_rep	mRNA	29486873	29490881	.	-	.	ID=Os05t0591900-04;Name=Os05t0591900-04;Locus_id=Os05g0591900;Note=Similar to Hypersensitive-induced response protein.;Transcript_evidence=AK111965 (DDBJ%2C Best hit);ORF_evidence=B6TBQ1 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Band 7 protein (IPR001107),Stomatin (IPR001972);NIAS_FLcDNA=006-202-G07;Expression=AK111965;TENOR=Os05t0591900-04;KEGG=Os05t0591900-04
Chr05	irgsp1_rep	five_prime_UTR	29490762	29490881	.	-	.	Parent=Os05t0591900-04
Chr05	irgsp1_rep	five_prime_UTR	29488555	29488586	.	-	.	Parent=Os05t0591900-04
Chr05	irgsp1_rep	CDS	29488366	29488554	.	-	0	Parent=Os05t0591900-04
Chr05	irgsp1_rep	CDS	29487877	29487997	.	-	0	Parent=Os05t0591900-04
Chr05	irgsp1_rep	CDS	29487556	29487744	.	-	2	Parent=Os05t0591900-04
Chr05	irgsp1_rep	CDS	29487089	29487456	.	-	2	Parent=Os05t0591900-04
Chr05	irgsp1_rep	three_prime_UTR	29486873	29487088	.	-	.	Parent=Os05t0591900-04
Chr05	irgsp1_rep	mRNA	29486821	29490680	.	-	.	ID=Os05t0591900-05;Name=Os05t0591900-05;Locus_id=Os05g0591900;Note=Similar to Hypersensitive-induced response protein.;Transcript_evidence=AK111545 (DDBJ%2C Best hit);ORF_evidence=B6TBQ1 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Band 7 protein (IPR001107),Stomatin (IPR001972);NIAS_FLcDNA=J013048N12;Expression=AK111545;TENOR=Os05t0591900-05;KEGG=Os05t0591900-05
Chr05	irgsp1_rep	five_prime_UTR	29489602	29490680	.	-	.	Parent=Os05t0591900-05
Chr05	irgsp1_rep	five_prime_UTR	29488555	29488585	.	-	.	Parent=Os05t0591900-05
Chr05	irgsp1_rep	CDS	29488366	29488554	.	-	0	Parent=Os05t0591900-05
Chr05	irgsp1_rep	CDS	29487877	29487997	.	-	0	Parent=Os05t0591900-05
Chr05	irgsp1_rep	CDS	29487556	29487744	.	-	2	Parent=Os05t0591900-05
Chr05	irgsp1_rep	CDS	29487089	29487456	.	-	2	Parent=Os05t0591900-05
Chr05	irgsp1_rep	three_prime_UTR	29486821	29487088	.	-	.	Parent=Os05t0591900-05
Chr05	irgsp1_rep	mRNA	29486873	29488491	.	-	.	ID=Os05t0591900-06;Name=Os05t0591900-06;Locus_id=Os05g0591900;Note=Similar to Hypersensitive-induced response protein.;Transcript_evidence=AK111955 (DDBJ%2C Best hit);ORF_evidence=B6TBQ1 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Band 7 protein (IPR001107),Stomatin (IPR001972);NIAS_FLcDNA=001-028-F07;Expression=AK111955;TENOR=Os05t0591900-06;KEGG=Os05t0591900-06
Chr05	irgsp1_rep	CDS	29488366	29488491	.	-	0	Parent=Os05t0591900-06
Chr05	irgsp1_rep	CDS	29487877	29487997	.	-	0	Parent=Os05t0591900-06
Chr05	irgsp1_rep	CDS	29487556	29487744	.	-	2	Parent=Os05t0591900-06
Chr05	irgsp1_rep	CDS	29487089	29487456	.	-	2	Parent=Os05t0591900-06
Chr05	irgsp1_rep	three_prime_UTR	29486873	29487088	.	-	.	Parent=Os05t0591900-06
Chr05	irgsp1_rep	mRNA	29486808	29490817	.	-	.	ID=Os05t0591900-07;Name=Os05t0591900-07;Locus_id=Os05g0591900;Note=Similar to Hypersensitive-induced response protein.;Transcript_evidence=AK104515 (DDBJ%2C Best hit),AK104358 (DDBJ%2C Best hit);ORF_evidence=B6TBQ1 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Band 7 protein (IPR001107),Stomatin (IPR001972);NIAS_FLcDNA=006-303-B08,001-035-A06;TENOR=Os05t0591900-07
Chr05	irgsp1_rep	five_prime_UTR	29490762	29490817	.	-	.	Parent=Os05t0591900-07
Chr05	irgsp1_rep	five_prime_UTR	29488555	29488586	.	-	.	Parent=Os05t0591900-07
Chr05	irgsp1_rep	CDS	29488366	29488554	.	-	0	Parent=Os05t0591900-07
Chr05	irgsp1_rep	CDS	29487877	29487997	.	-	0	Parent=Os05t0591900-07
Chr05	irgsp1_rep	CDS	29487556	29487744	.	-	2	Parent=Os05t0591900-07
Chr05	irgsp1_rep	CDS	29487089	29487456	.	-	2	Parent=Os05t0591900-07
Chr05	irgsp1_rep	three_prime_UTR	29486808	29487088	.	-	.	Parent=Os05t0591900-07
Chr05	irgsp1_rep	mRNA	29487115	29487459	.	+	.	ID=Os05t0591925-00;Name=Os05t0591925-00;Locus_id=Os05g0591925;Note=Non-protein coding transcript.;Transcript_evidence=BT036075 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0591925-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	exon	29487115	29487459	.	+	.	Parent=Os05t0591925-00
Chr05	irgsp1_rep	mRNA	29494549	29495754	.	+	.	ID=Os05t0592000-00;Name=Os05t0592000-00;Locus_id=Os05g0592000;Note=Hypothetical conserved gene.;Transcript_evidence=EU968939 (DDBJ);ORF_evidence=NP_001150951.1 (RefSeq);InterPro=Heat shock protein Hsp20 (IPR002068),HSP20-like chaperone (IPR008978);TENOR=Os05t0592000-00;KEGG=Os05t0592000-00
Chr05	irgsp1_rep	five_prime_UTR	29494549	29494611	.	+	.	Parent=Os05t0592000-00
Chr05	irgsp1_rep	CDS	29494612	29494753	.	+	0	Parent=Os05t0592000-00
Chr05	irgsp1_rep	CDS	29494902	29495704	.	+	2	Parent=Os05t0592000-00
Chr05	irgsp1_rep	three_prime_UTR	29495705	29495754	.	+	.	Parent=Os05t0592000-00
Chr05	irgsp1_rep	mRNA	29495935	29499457	.	-	.	ID=Os05t0592100-01;Name=Os05t0592100-01;Locus_id=Os05g0592100;Oryzabase Gene Symbol Synonym(s)=OsClp8%2C CLP8;Oryzabase Gene Name Synonym(s)=Clp protease 8%2C CLP PROTEASE 8;Note=Peptidase S14%2C ClpP family protein.;Transcript_evidence=AK071333 (DDBJ%2C Best hit);ORF_evidence=B8AXJ0 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S14%2C ClpP (IPR001907),Peptidase S14/S49 (IPR023562);NIAS_FLcDNA=J023091K09;Oryzabase=20035;Expression=AK071333;TENOR=Os05t0592100-01;KEGG=Os05t0592100-01
Chr05	irgsp1_rep	five_prime_UTR	29499408	29499457	.	-	.	Parent=Os05t0592100-01
Chr05	irgsp1_rep	CDS	29499200	29499407	.	-	0	Parent=Os05t0592100-01
Chr05	irgsp1_rep	CDS	29498313	29498428	.	-	2	Parent=Os05t0592100-01
Chr05	irgsp1_rep	CDS	29498003	29498212	.	-	0	Parent=Os05t0592100-01
Chr05	irgsp1_rep	CDS	29497791	29497895	.	-	0	Parent=Os05t0592100-01
Chr05	irgsp1_rep	CDS	29497622	29497684	.	-	0	Parent=Os05t0592100-01
Chr05	irgsp1_rep	CDS	29496885	29496996	.	-	0	Parent=Os05t0592100-01
Chr05	irgsp1_rep	CDS	29496717	29496778	.	-	2	Parent=Os05t0592100-01
Chr05	irgsp1_rep	CDS	29496426	29496608	.	-	0	Parent=Os05t0592100-01
Chr05	irgsp1_rep	CDS	29496241	29496342	.	-	0	Parent=Os05t0592100-01
Chr05	irgsp1_rep	three_prime_UTR	29495935	29496240	.	-	.	Parent=Os05t0592100-01
Chr05	irgsp1_rep	mRNA	29507007	29509972	.	+	.	ID=Os05t0592300-01;Name=Os05t0592300-01;Locus_id=Os05g0592300;Note=Protein of unknown function DUF1637 family protein.;Transcript_evidence=AK068520 (DDBJ%2C Best hit);ORF_evidence=B4F886 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: cysteamine dioxygenase activity (GO:0047800);InterPro=Cupin%2C RmlC-type (IPR011051),Cysteamine dioxygenase (IPR012864),RmlC-like jelly roll fold (IPR014710);NIAS_FLcDNA=J013155I19;Expression=AK068520;TENOR=Os05t0592300-01;KEGG=Os05t0592300-01
Chr05	irgsp1_rep	five_prime_UTR	29507007	29507294	.	+	.	Parent=Os05t0592300-01
Chr05	irgsp1_rep	CDS	29507295	29507541	.	+	0	Parent=Os05t0592300-01
Chr05	irgsp1_rep	CDS	29508549	29508667	.	+	2	Parent=Os05t0592300-01
Chr05	irgsp1_rep	CDS	29508752	29508914	.	+	0	Parent=Os05t0592300-01
Chr05	irgsp1_rep	CDS	29509022	29509228	.	+	2	Parent=Os05t0592300-01
Chr05	irgsp1_rep	CDS	29509372	29509460	.	+	2	Parent=Os05t0592300-01
Chr05	irgsp1_rep	three_prime_UTR	29509461	29509972	.	+	.	Parent=Os05t0592300-01
Chr05	irgsp1_rep	mRNA	29508206	29509951	.	+	.	ID=Os05t0592300-02;Name=Os05t0592300-02;Locus_id=Os05g0592300;Note=Similar to Cupin%2C RmlC-type.;Transcript_evidence=AK065070 (DDBJ%2C Best hit);ORF_evidence=B4F886 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: cysteamine dioxygenase activity (GO:0047800);InterPro=Cupin%2C RmlC-type (IPR011051),Cysteamine dioxygenase (IPR012864),RmlC-like jelly roll fold (IPR014710);NIAS_FLcDNA=J013001K06;Expression=AK065070;TENOR=Os05t0592300-02;KEGG=Os05t0592300-02
Chr05	irgsp1_rep	five_prime_UTR	29508206	29508511	.	+	.	Parent=Os05t0592300-02
Chr05	irgsp1_rep	CDS	29508512	29508667	.	+	0	Parent=Os05t0592300-02
Chr05	irgsp1_rep	CDS	29508752	29508914	.	+	0	Parent=Os05t0592300-02
Chr05	irgsp1_rep	CDS	29509022	29509228	.	+	2	Parent=Os05t0592300-02
Chr05	irgsp1_rep	CDS	29509372	29509460	.	+	2	Parent=Os05t0592300-02
Chr05	irgsp1_rep	three_prime_UTR	29509461	29509951	.	+	.	Parent=Os05t0592300-02
Chr05	irgsp1_rep	mRNA	29508537	29509089	.	-	.	ID=Os05t0592350-00;Name=Os05t0592350-00;Locus_id=Os05g0592350;Note=Hypothetical gene.;Transcript_evidence=EU954046 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0592350-00;KEGG=Os05t0592350-00
Chr05	irgsp1_rep	five_prime_UTR	29509089	29509089	.	-	.	Parent=Os05t0592350-00
Chr05	irgsp1_rep	CDS	29508867	29509088	.	-	0	Parent=Os05t0592350-00
Chr05	irgsp1_rep	three_prime_UTR	29508537	29508866	.	-	.	Parent=Os05t0592350-00
Chr05	irgsp1_rep	mRNA	29511892	29520050	.	+	.	ID=Os05t0592400-01;Name=Os05t0592400-01;Locus_id=Os05g0592400;Oryzabase Gene Symbol Synonym(s)=UV-DDB1%2C OsUV-DDB1%2C OsUV-DDB;Oryzabase Gene Name Synonym(s)=UV-damaged DNA binding protein large subunit%2C UV-DDB large subunit%2C UV-damaged DNA binding protein%2C UV-damaged DNA binding protein 1;Note=UV-damaged DNA binding protein.;Transcript_evidence=AK065508 (DDBJ%2C Best hit);ORF_evidence=Q9FS08 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515);InterPro=Cleavage/polyadenylation specificity factor%2C A subunit%2C C-terminal (IPR004871),Quinonprotein alcohol dehydrogenase-like (IPR011047),WD40/YVTN repeat-like-containing domain (IPR015943);NIAS_FLcDNA=J013026I01;Oryzabase=18091;Expression=AK065508;TENOR=Os05t0592400-01;KEGG=Os05t0592400-01
Chr05	irgsp1_rep	five_prime_UTR	29511892	29512006	.	+	.	Parent=Os05t0592400-01
Chr05	irgsp1_rep	CDS	29512007	29512110	.	+	0	Parent=Os05t0592400-01
Chr05	irgsp1_rep	CDS	29512441	29512489	.	+	1	Parent=Os05t0592400-01
Chr05	irgsp1_rep	CDS	29512588	29512647	.	+	0	Parent=Os05t0592400-01
Chr05	irgsp1_rep	CDS	29512738	29512829	.	+	0	Parent=Os05t0592400-01
Chr05	irgsp1_rep	CDS	29513342	29513393	.	+	1	Parent=Os05t0592400-01
Chr05	irgsp1_rep	CDS	29513534	29513596	.	+	0	Parent=Os05t0592400-01
Chr05	irgsp1_rep	CDS	29513707	29513756	.	+	0	Parent=Os05t0592400-01
Chr05	irgsp1_rep	CDS	29514266	29514341	.	+	1	Parent=Os05t0592400-01
Chr05	irgsp1_rep	CDS	29514769	29514981	.	+	0	Parent=Os05t0592400-01
Chr05	irgsp1_rep	CDS	29515088	29515194	.	+	0	Parent=Os05t0592400-01
Chr05	irgsp1_rep	CDS	29515291	29515399	.	+	1	Parent=Os05t0592400-01
Chr05	irgsp1_rep	CDS	29515814	29516014	.	+	0	Parent=Os05t0592400-01
Chr05	irgsp1_rep	CDS	29516098	29516313	.	+	0	Parent=Os05t0592400-01
Chr05	irgsp1_rep	CDS	29516612	29516722	.	+	0	Parent=Os05t0592400-01
Chr05	irgsp1_rep	CDS	29517080	29517355	.	+	0	Parent=Os05t0592400-01
Chr05	irgsp1_rep	CDS	29517433	29517707	.	+	0	Parent=Os05t0592400-01
Chr05	irgsp1_rep	CDS	29518139	29518490	.	+	1	Parent=Os05t0592400-01
Chr05	irgsp1_rep	CDS	29518696	29518980	.	+	0	Parent=Os05t0592400-01
Chr05	irgsp1_rep	CDS	29519067	29519648	.	+	0	Parent=Os05t0592400-01
Chr05	irgsp1_rep	three_prime_UTR	29519649	29520050	.	+	.	Parent=Os05t0592400-01
Chr05	irgsp1_rep	mRNA	29518831	29520052	.	+	.	ID=Os05t0592400-02;Name=Os05t0592400-02;Locus_id=Os05g0592400;Oryzabase Gene Symbol Synonym(s)=UV-DDB1%2C OsUV-DDB1%2C OsUV-DDB;Oryzabase Gene Name Synonym(s)=UV-damaged DNA binding protein large subunit%2C UV-DDB large subunit%2C UV-damaged DNA binding protein%2C UV-damaged DNA binding protein 1;Note=Similar to UV-damaged DNA binding protein.;Transcript_evidence=AK059736 (DDBJ%2C Best hit),AK104782 (DDBJ%2C Best hit);ORF_evidence=Q9FS08 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676);InterPro=Cleavage/polyadenylation specificity factor%2C A subunit%2C C-terminal (IPR004871);NIAS_FLcDNA=006-202-D04,001-039-C09;Oryzabase=18091;Expression=AK059736;TENOR=Os05t0592400-02;KEGG=Os05t0592400-02
Chr05	irgsp1_rep	CDS	29518831	29518980	.	+	0	Parent=Os05t0592400-02
Chr05	irgsp1_rep	CDS	29519067	29519648	.	+	0	Parent=Os05t0592400-02
Chr05	irgsp1_rep	three_prime_UTR	29519649	29520052	.	+	.	Parent=Os05t0592400-02
Chr05	irgsp1_rep	mRNA	29517590	29519656	.	-	.	ID=Os05t0592450-00;Name=Os05t0592450-00;Locus_id=Os05g0592450;Note=Hypothetical gene.;Transcript_evidence=BT024148 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0592450-00;KEGG=Os05t0592450-00
Chr05	irgsp1_rep	five_prime_UTR	29519441	29519656	.	-	.	Parent=Os05t0592450-00
Chr05	irgsp1_rep	CDS	29519171	29519440	.	-	0	Parent=Os05t0592450-00
Chr05	irgsp1_rep	three_prime_UTR	29519045	29519170	.	-	.	Parent=Os05t0592450-00
Chr05	irgsp1_rep	three_prime_UTR	29518694	29518964	.	-	.	Parent=Os05t0592450-00
Chr05	irgsp1_rep	three_prime_UTR	29518127	29518488	.	-	.	Parent=Os05t0592450-00
Chr05	irgsp1_rep	three_prime_UTR	29517590	29517694	.	-	.	Parent=Os05t0592450-00
Chr05	irgsp1_rep	mRNA	29520232	29527462	.	+	.	ID=Os05t0592500-01;Name=Os05t0592500-01;Locus_id=Os05g0592500;Note=SIT4 phosphatase-associated protein family protein.;Transcript_evidence=AK099566 (DDBJ%2C Best hit),AK071878 (DDBJ%2C Best hit);ORF_evidence=Q01JU5 (UniProt);InterPro=SIT4 phosphatase-associated protein family (IPR007587);NIAS_FLcDNA=J013034M16,J013039C12;TENOR=Os05t0592500-01
Chr05	irgsp1_rep	five_prime_UTR	29520232	29520453	.	+	.	Parent=Os05t0592500-01
Chr05	irgsp1_rep	CDS	29520454	29520492	.	+	0	Parent=Os05t0592500-01
Chr05	irgsp1_rep	CDS	29521551	29521654	.	+	0	Parent=Os05t0592500-01
Chr05	irgsp1_rep	CDS	29522020	29522106	.	+	1	Parent=Os05t0592500-01
Chr05	irgsp1_rep	CDS	29522196	29522271	.	+	1	Parent=Os05t0592500-01
Chr05	irgsp1_rep	CDS	29522387	29522461	.	+	0	Parent=Os05t0592500-01
Chr05	irgsp1_rep	CDS	29522625	29522678	.	+	0	Parent=Os05t0592500-01
Chr05	irgsp1_rep	CDS	29523158	29523217	.	+	0	Parent=Os05t0592500-01
Chr05	irgsp1_rep	CDS	29523302	29523418	.	+	0	Parent=Os05t0592500-01
Chr05	irgsp1_rep	CDS	29523592	29523686	.	+	0	Parent=Os05t0592500-01
Chr05	irgsp1_rep	CDS	29523805	29524007	.	+	1	Parent=Os05t0592500-01
Chr05	irgsp1_rep	CDS	29524204	29524301	.	+	2	Parent=Os05t0592500-01
Chr05	irgsp1_rep	CDS	29524683	29524786	.	+	0	Parent=Os05t0592500-01
Chr05	irgsp1_rep	CDS	29524862	29525027	.	+	1	Parent=Os05t0592500-01
Chr05	irgsp1_rep	CDS	29525128	29525250	.	+	0	Parent=Os05t0592500-01
Chr05	irgsp1_rep	CDS	29525372	29525454	.	+	0	Parent=Os05t0592500-01
Chr05	irgsp1_rep	CDS	29525542	29525683	.	+	1	Parent=Os05t0592500-01
Chr05	irgsp1_rep	CDS	29525848	29525874	.	+	0	Parent=Os05t0592500-01
Chr05	irgsp1_rep	CDS	29526109	29526179	.	+	0	Parent=Os05t0592500-01
Chr05	irgsp1_rep	CDS	29526255	29526843	.	+	1	Parent=Os05t0592500-01
Chr05	irgsp1_rep	three_prime_UTR	29526844	29527462	.	+	.	Parent=Os05t0592500-01
Chr05	irgsp1_rep	mRNA	29528780	29534681	.	-	.	ID=Os05t0592600-01;Name=Os05t0592600-01;Locus_id=Os05g0592600;Note=Translation initiation factor 2 related domain containing protein.;Transcript_evidence=AK073484 (DDBJ%2C Best hit);ORF_evidence=NP_177807.3 (RefSeq);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Protein synthesis factor%2C GTP-binding (IPR000795),Translation elongation factor EFTu/EF1A%2C domain 2 (IPR004161),Small GTP-binding protein domain (IPR005225),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Translation initiation factor IF- 2 (IPR015760),Translation initiation factor IF- 2%2C domain 3 (IPR023115);NIAS_FLcDNA=J033042B06;Expression=AK073484;TENOR=Os05t0592600-01;KEGG=Os05t0592600-01
Chr05	irgsp1_rep	five_prime_UTR	29534531	29534681	.	-	.	Parent=Os05t0592600-01
Chr05	irgsp1_rep	CDS	29534483	29534530	.	-	0	Parent=Os05t0592600-01
Chr05	irgsp1_rep	CDS	29532062	29534236	.	-	0	Parent=Os05t0592600-01
Chr05	irgsp1_rep	CDS	29531859	29531966	.	-	0	Parent=Os05t0592600-01
Chr05	irgsp1_rep	CDS	29531674	29531774	.	-	0	Parent=Os05t0592600-01
Chr05	irgsp1_rep	CDS	29531492	29531582	.	-	1	Parent=Os05t0592600-01
Chr05	irgsp1_rep	CDS	29531318	29531428	.	-	0	Parent=Os05t0592600-01
Chr05	irgsp1_rep	CDS	29531164	29531229	.	-	0	Parent=Os05t0592600-01
Chr05	irgsp1_rep	CDS	29530524	29530583	.	-	0	Parent=Os05t0592600-01
Chr05	irgsp1_rep	CDS	29529891	29530448	.	-	0	Parent=Os05t0592600-01
Chr05	irgsp1_rep	CDS	29529570	29529689	.	-	0	Parent=Os05t0592600-01
Chr05	irgsp1_rep	CDS	29529365	29529484	.	-	0	Parent=Os05t0592600-01
Chr05	irgsp1_rep	CDS	29529192	29529257	.	-	0	Parent=Os05t0592600-01
Chr05	irgsp1_rep	three_prime_UTR	29528780	29529191	.	-	.	Parent=Os05t0592600-01
Chr05	irgsp1_rep	mRNA	29534099	29534674	.	-	.	ID=Os05t0592600-02;Name=Os05t0592600-02;Locus_id=Os05g0592600;Note=Hypothetical conserved gene.;Transcript_evidence=AK109452 (DDBJ%2C Best hit);ORF_evidence=B9FJ04 (UniProt);NIAS_FLcDNA=001-118-B09;Expression=AK109452;TENOR=Os05t0592600-02;KEGG=Os05t0592600-02
Chr05	irgsp1_rep	five_prime_UTR	29534531	29534674	.	-	.	Parent=Os05t0592600-02
Chr05	irgsp1_rep	CDS	29534099	29534530	.	-	0	Parent=Os05t0592600-02
Chr05	irgsp1_rep	mRNA	29533604	29534618	.	-	.	ID=Os05t0592600-03;Name=Os05t0592600-03;Locus_id=Os05g0592600;Note=Hypothetical conserved gene.;Transcript_evidence=AK099632 (DDBJ%2C Best hit);ORF_evidence=Q6L4R8 (UniProt);NIAS_FLcDNA=J013058P09;Expression=AK099632;TENOR=Os05t0592600-03;KEGG=Os05t0592600-03
Chr05	irgsp1_rep	five_prime_UTR	29534531	29534618	.	-	.	Parent=Os05t0592600-03
Chr05	irgsp1_rep	CDS	29533604	29534530	.	-	0	Parent=Os05t0592600-03
Chr05	irgsp1_rep	mRNA	29538446	29542019	.	-	.	ID=Os05t0592800-01;Name=Os05t0592800-01;Locus_id=Os05g0592800;Oryzabase Gene Symbol Synonym(s)=OsPP2C53%2C PP2C53%2C OsPP81%2C OsABIL2%2C ABIL2;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C53%2C protein phosphatase 2C 53%2C protein phosphatase 81%2C OsABI-LIKE2%2C ABI-LIKE2%2C ABI-LIKE 2;Note=Splicing variant of protein phosphatase 2C 53;Transcript_evidence=AK070388;ORF_evidence=Q6L4R7-2;GO=Biological Process: protein dephosphorylation (GO:0006470),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C family (IPR015655),PPM-type phosphatase domain (IPR001932);NIAS_FLcDNA=J023054G02;Manual Curation=May 29%2C 2019;Literature_PMID=19021904;Oryzabase=17926;Expression=AK070388;TENOR=Os05t0592800-01;KEGG=Os05t0592800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	29541176	29542019	.	-	.	Parent=Os05t0592800-01
Chr05	irgsp1_rep	CDS	29541050	29541175	.	-	0	Parent=Os05t0592800-01
Chr05	irgsp1_rep	CDS	29540612	29540938	.	-	0	Parent=Os05t0592800-01
Chr05	irgsp1_rep	CDS	29540409	29540514	.	-	0	Parent=Os05t0592800-01
Chr05	irgsp1_rep	CDS	29538874	29539220	.	-	2	Parent=Os05t0592800-01
Chr05	irgsp1_rep	three_prime_UTR	29538446	29538873	.	-	.	Parent=Os05t0592800-01
Chr05	irgsp1_rep	mRNA	29538463	29542015	.	-	.	ID=Os05t0592800-02;Name=Os05t0592800-02;Locus_id=Os05g0592800;RAP-DB Gene Symbol Synonym(s)=OsABIL2%2C OsPP2C53%2C PP2C53%2C OsPP81;RAP-DB Gene Name Synonym(s)=OsABI-LIKE2%2C protein phosphatase 2C53%2C protein phosphatase 2C 53%2C protein phosphatase 81;Oryzabase Gene Symbol Synonym(s)=OsPP2C53%2C PP2C53%2C OsPP81%2C OsABIL2%2C ABIL2;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C53%2C protein phosphatase 2C 53%2C protein phosphatase 81%2C OsABI-LIKE2%2C ABI-LIKE2%2C ABI-LIKE 2;Note=Clade A type 2C protein phosphatase%2C ABA signaling%2C Regulation of root development%2C Drought resistance%2C Stomatal closure;Transcript_evidence=AK067627;ORF_evidence=Q6L4R7;GO=Biological Process: protein dephosphorylation (GO:0006470),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722),Molecular Function: cation binding (GO:0043169);InterPro=Protein phosphatase 2C family (IPR015655),PPM-type phosphatase domain (IPR001932),PPM-type phosphatase%2C divalent cation binding (IPR000222);NIAS_FLcDNA=J013113I18;Manual Curation=May 29%2C 2019;Literature_PMID=31134357,26491145,19021904;Oryzabase=17926;Expression=AK067627;TENOR=Os05t0592800-02;KEGG=Os05t0592800-02 (EC:3.1.3.16)
Chr05	irgsp1_rep	five_prime_UTR	29541597	29542015	.	-	.	Parent=Os05t0592800-02
Chr05	irgsp1_rep	CDS	29541039	29541596	.	-	0	Parent=Os05t0592800-02
Chr05	irgsp1_rep	CDS	29540612	29540938	.	-	0	Parent=Os05t0592800-02
Chr05	irgsp1_rep	CDS	29540409	29540514	.	-	0	Parent=Os05t0592800-02
Chr05	irgsp1_rep	CDS	29538874	29539220	.	-	2	Parent=Os05t0592800-02
Chr05	irgsp1_rep	three_prime_UTR	29538463	29538873	.	-	.	Parent=Os05t0592800-02
Chr05	irgsp1_rep	mRNA	29538676	29541976	.	-	.	ID=Os05t0592800-03;Name=Os05t0592800-03;Locus_id=Os05g0592800;Oryzabase Gene Symbol Synonym(s)=OsPP2C53%2C PP2C53%2C OsPP81%2C OsABIL2%2C ABIL2;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C53%2C protein phosphatase 2C 53%2C protein phosphatase 81%2C OsABI-LIKE2%2C ABI-LIKE2%2C ABI-LIKE 2;Note=Similar to Protein phosphatase 2C ABI2 (EC 3.1.3.16) (PP2C) (Abscisic acid- insensitive 2).;Transcript_evidence=AK104323 (DDBJ%2C Best hit);ORF_evidence=NP_001150302.1 (RefSeq);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=001-027-G08;Oryzabase=17926;Expression=AK104323;TENOR=Os05t0592800-03;KEGG=Os05t0592800-03 (EC:3.1.3.16)
Chr05	irgsp1_rep	five_prime_UTR	29541597	29541976	.	-	.	Parent=Os05t0592800-03
Chr05	irgsp1_rep	CDS	29541039	29541596	.	-	0	Parent=Os05t0592800-03
Chr05	irgsp1_rep	CDS	29540612	29540938	.	-	0	Parent=Os05t0592800-03
Chr05	irgsp1_rep	CDS	29540409	29540514	.	-	0	Parent=Os05t0592800-03
Chr05	irgsp1_rep	CDS	29538874	29539220	.	-	2	Parent=Os05t0592800-03
Chr05	irgsp1_rep	three_prime_UTR	29538676	29538873	.	-	.	Parent=Os05t0592800-03
Chr05	irgsp1_rep	mRNA	29545102	29546639	.	-	.	ID=Os05t0593000-01;Name=Os05t0593000-01;Locus_id=Os05g0593000;Note=Phospholipase A2%2C active site domain containing protein.;Transcript_evidence=AK064253 (DDBJ%2C Best hit);ORF_evidence=B6D1Q6 (UniProt);NIAS_FLcDNA=002-105-C07;Expression=AK064253;TENOR=Os05t0593000-01;KEGG=Os05t0593000-01
Chr05	irgsp1_rep	five_prime_UTR	29546564	29546639	.	-	.	Parent=Os05t0593000-01
Chr05	irgsp1_rep	CDS	29545292	29546563	.	-	0	Parent=Os05t0593000-01
Chr05	irgsp1_rep	three_prime_UTR	29545102	29545291	.	-	.	Parent=Os05t0593000-01
Chr05	irgsp1_rep	mRNA	29547451	29551624	.	-	.	ID=Os05t0593100-01;Name=Os05t0593100-01;Locus_id=Os05g0593100;Oryzabase Gene Name Synonym(s)=Vacuolar ATP synthase subunit C;Note=Similar to Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C subunit) (Vacuolar proton pump C subunit).;Transcript_evidence=AK100119 (DDBJ%2C Best hit),AK061855 (DDBJ%2C Best hit);ORF_evidence=C6ZDC2 (UniProt);GO=Biological Process: ATP hydrolysis coupled proton transport (GO:0015991),Cellular Component: proton-transporting V-type ATPase%2C V1 domain (GO:0033180),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C catalyzing transmembrane movement of substances (GO:0016820);InterPro=ATPase%2C V1 complex%2C subunit C (IPR004907);NIAS_FLcDNA=J023007J10,001-040-F12;Oryzabase=20527;Expression=AK100119;TENOR=Os05t0593100-01;KEGG=Os05t0593100-01 (EC:3.6.3.14)
Chr05	irgsp1_rep	five_prime_UTR	29551531	29551624	.	-	.	Parent=Os05t0593100-01
Chr05	irgsp1_rep	CDS	29551408	29551530	.	-	0	Parent=Os05t0593100-01
Chr05	irgsp1_rep	CDS	29551254	29551322	.	-	0	Parent=Os05t0593100-01
Chr05	irgsp1_rep	CDS	29551038	29551165	.	-	0	Parent=Os05t0593100-01
Chr05	irgsp1_rep	CDS	29550834	29550933	.	-	1	Parent=Os05t0593100-01
Chr05	irgsp1_rep	CDS	29550311	29550378	.	-	0	Parent=Os05t0593100-01
Chr05	irgsp1_rep	CDS	29550035	29550176	.	-	1	Parent=Os05t0593100-01
Chr05	irgsp1_rep	CDS	29549556	29549672	.	-	0	Parent=Os05t0593100-01
Chr05	irgsp1_rep	CDS	29549250	29549375	.	-	0	Parent=Os05t0593100-01
Chr05	irgsp1_rep	CDS	29548258	29548341	.	-	0	Parent=Os05t0593100-01
Chr05	irgsp1_rep	CDS	29548087	29548166	.	-	0	Parent=Os05t0593100-01
Chr05	irgsp1_rep	CDS	29547903	29547999	.	-	1	Parent=Os05t0593100-01
Chr05	irgsp1_rep	three_prime_UTR	29547451	29547902	.	-	.	Parent=Os05t0593100-01
Chr05	irgsp1_rep	mRNA	29547868	29550160	.	+	.	ID=Os05t0593150-00;Name=Os05t0593150-00;Locus_id=Os05g0593150;Note=Hypothetical gene.;Transcript_evidence=BT019108 (DDBJ);ORF_evidence=GeneMark;TENOR=Os05t0593150-00;KEGG=Os05t0593150-00
Chr05	irgsp1_rep	five_prime_UTR	29547868	29547869	.	+	.	Parent=Os05t0593150-00
Chr05	irgsp1_rep	CDS	29547870	29547997	.	+	0	Parent=Os05t0593150-00
Chr05	irgsp1_rep	CDS	29548085	29548150	.	+	1	Parent=Os05t0593150-00
Chr05	irgsp1_rep	CDS	29548245	29548266	.	+	1	Parent=Os05t0593150-00
Chr05	irgsp1_rep	three_prime_UTR	29548267	29548351	.	+	.	Parent=Os05t0593150-00
Chr05	irgsp1_rep	three_prime_UTR	29549260	29549372	.	+	.	Parent=Os05t0593150-00
Chr05	irgsp1_rep	three_prime_UTR	29549553	29549689	.	+	.	Parent=Os05t0593150-00
Chr05	irgsp1_rep	three_prime_UTR	29550050	29550160	.	+	.	Parent=Os05t0593150-00
Chr05	irgsp1_rep	mRNA	29552673	29554019	.	-	.	ID=Os05t0593200-01;Name=Os05t0593200-01;Locus_id=Os05g0593200;Oryzabase Gene Name Synonym(s)=a protein of unknown function;Note=Conserved hypothetical protein.;Transcript_evidence=AK059115 (DDBJ%2C Best hit);ORF_evidence=A2Y848 (UniProt);NIAS_FLcDNA=001-022-E07;Oryzabase=20361;Expression=AK059115;TENOR=Os05t0593200-01;KEGG=Os05t0593200-01
Chr05	irgsp1_rep	five_prime_UTR	29554014	29554019	.	-	.	Parent=Os05t0593200-01
Chr05	irgsp1_rep	CDS	29553836	29554013	.	-	0	Parent=Os05t0593200-01
Chr05	irgsp1_rep	CDS	29552845	29553143	.	-	2	Parent=Os05t0593200-01
Chr05	irgsp1_rep	three_prime_UTR	29552673	29552844	.	-	.	Parent=Os05t0593200-01
Chr05	irgsp1_rep	mRNA	29554792	29559818	.	-	.	ID=Os05t0593300-01;Name=Os05t0593300-01;Locus_id=Os05g0593300;Note=Conserved hypothetical protein.;Transcript_evidence=AK106591 (DDBJ%2C Best hit);ORF_evidence=B9FLX2 (UniProt);NIAS_FLcDNA=002-111-G06;TENOR=Os05t0593300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	29559817	29559818	.	-	.	Parent=Os05t0593300-01
Chr05	irgsp1_rep	CDS	29559796	29559816	.	-	0	Parent=Os05t0593300-01
Chr05	irgsp1_rep	CDS	29559404	29559542	.	-	0	Parent=Os05t0593300-01
Chr05	irgsp1_rep	CDS	29559079	29559194	.	-	2	Parent=Os05t0593300-01
Chr05	irgsp1_rep	CDS	29558527	29558627	.	-	0	Parent=Os05t0593300-01
Chr05	irgsp1_rep	CDS	29558140	29558361	.	-	1	Parent=Os05t0593300-01
Chr05	irgsp1_rep	CDS	29557844	29558049	.	-	1	Parent=Os05t0593300-01
Chr05	irgsp1_rep	CDS	29557656	29557762	.	-	2	Parent=Os05t0593300-01
Chr05	irgsp1_rep	CDS	29555514	29556821	.	-	0	Parent=Os05t0593300-01
Chr05	irgsp1_rep	three_prime_UTR	29555445	29555513	.	-	.	Parent=Os05t0593300-01
Chr05	irgsp1_rep	three_prime_UTR	29554792	29555129	.	-	.	Parent=Os05t0593300-01
Chr05	irgsp1_rep	mRNA	29563935	29566473	.	-	.	ID=Os05t0593550-01;Name=Os05t0593550-01;Locus_id=Os05g0593550;Note=Hypothetical conserved gene.;Transcript_evidence=AK243075 (DDBJ%2C Best hit);ORF_evidence=B9FLX2 (UniProt);NIAS_FLcDNA=J100019H12;TENOR=Os05t0593550-01
Chr05	irgsp1_rep	five_prime_UTR	29566253	29566473	.	-	.	Parent=Os05t0593550-01
Chr05	irgsp1_rep	five_prime_UTR	29565745	29565851	.	-	.	Parent=Os05t0593550-01
Chr05	irgsp1_rep	CDS	29565632	29565744	.	-	0	Parent=Os05t0593550-01
Chr05	irgsp1_rep	CDS	29565489	29565543	.	-	1	Parent=Os05t0593550-01
Chr05	irgsp1_rep	CDS	29565313	29565410	.	-	0	Parent=Os05t0593550-01
Chr05	irgsp1_rep	CDS	29563935	29565226	.	-	1	Parent=Os05t0593550-01
Chr05	irgsp1_rep	mRNA	29571146	29575990	.	-	.	ID=Os05t0593800-01;Name=Os05t0593800-01;Locus_id=Os05g0593800;Note=Similar to Dual specificity kinase 1.;Transcript_evidence=AK111911 (DDBJ%2C Best hit),AK111994 (DDBJ%2C Best hit);ORF_evidence=A2I5G0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033124M05,001-033-D10;Expression=AK111911;TENOR=Os05t0593800-01;KEGG=Os05t0593800-01 (EC:2.7.11.1)
Chr05	irgsp1_rep	five_prime_UTR	29575856	29575990	.	-	.	Parent=Os05t0593800-01
Chr05	irgsp1_rep	five_prime_UTR	29575303	29575355	.	-	.	Parent=Os05t0593800-01
Chr05	irgsp1_rep	CDS	29575227	29575302	.	-	0	Parent=Os05t0593800-01
Chr05	irgsp1_rep	CDS	29575077	29575117	.	-	2	Parent=Os05t0593800-01
Chr05	irgsp1_rep	CDS	29574431	29574500	.	-	0	Parent=Os05t0593800-01
Chr05	irgsp1_rep	CDS	29574194	29574342	.	-	2	Parent=Os05t0593800-01
Chr05	irgsp1_rep	CDS	29573965	29574060	.	-	0	Parent=Os05t0593800-01
Chr05	irgsp1_rep	CDS	29573812	29573882	.	-	0	Parent=Os05t0593800-01
Chr05	irgsp1_rep	CDS	29573658	29573719	.	-	1	Parent=Os05t0593800-01
Chr05	irgsp1_rep	CDS	29573449	29573512	.	-	2	Parent=Os05t0593800-01
Chr05	irgsp1_rep	CDS	29573275	29573359	.	-	1	Parent=Os05t0593800-01
Chr05	irgsp1_rep	CDS	29573076	29573202	.	-	0	Parent=Os05t0593800-01
Chr05	irgsp1_rep	CDS	29572858	29572940	.	-	2	Parent=Os05t0593800-01
Chr05	irgsp1_rep	CDS	29572699	29572759	.	-	0	Parent=Os05t0593800-01
Chr05	irgsp1_rep	CDS	29572111	29572253	.	-	2	Parent=Os05t0593800-01
Chr05	irgsp1_rep	CDS	29571697	29571990	.	-	0	Parent=Os05t0593800-01
Chr05	irgsp1_rep	three_prime_UTR	29571146	29571696	.	-	.	Parent=Os05t0593800-01
Chr05	irgsp1_rep	mRNA	29579051	29580572	.	-	.	ID=Os05t0593900-01;Name=Os05t0593900-01;Locus_id=Os05g0593900;Oryzabase Gene Symbol Synonym(s)=OsVPE4%2C VPE4%2C OsaLeg4%2C Leg4;Oryzabase Gene Name Synonym(s)=vacuolar processing enzyme 4%2C legumain 4;Note=Similar to C13 endopeptidase NP1 precursor.;Transcript_evidence=AK058553 (DDBJ%2C Best hit);ORF_evidence=E5AXU9 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197);InterPro=Peptidase C13%2C legumain (IPR001096);NIAS_FLcDNA=001-017-C11;Oryzabase=10529;Expression=AK058553;TENOR=Os05t0593900-01;KEGG=Os05t0593900-01 (EC:3.4.22.34)
Chr05	irgsp1_rep	CDS	29579148	29580572	.	-	0	Parent=Os05t0593900-01
Chr05	irgsp1_rep	three_prime_UTR	29579051	29579147	.	-	.	Parent=Os05t0593900-01
Chr05	irgsp1_rep	mRNA	29583709	29584308	.	+	.	ID=Os05t0594001-00;Name=Os05t0594001-00;Locus_id=Os05g0594001;Note=Non-protein coding transcript.;Transcript_evidence=CT836387 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os05t0594001-00
Chr05	irgsp1_rep	exon	29583709	29584308	.	+	.	Parent=Os05t0594001-00
Chr05	irgsp1_rep	mRNA	29584836	29586141	.	-	.	ID=Os05t0594100-01;Name=Os05t0594100-01;Locus_id=Os05g0594100;Note=Similar to GDA2 protein.;Transcript_evidence=AK106130 (DDBJ%2C Best hit);ORF_evidence=NP_001150270.1 (RefSeq);InterPro=Development/cell death domain (IPR013989);NIAS_FLcDNA=001-207-F10;Expression=AK106130;TENOR=Os05t0594100-01;KEGG=Os05t0594100-01
Chr05	irgsp1_rep	five_prime_UTR	29585910	29586141	.	-	.	Parent=Os05t0594100-01
Chr05	irgsp1_rep	CDS	29585076	29585909	.	-	0	Parent=Os05t0594100-01
Chr05	irgsp1_rep	three_prime_UTR	29584836	29585075	.	-	.	Parent=Os05t0594100-01
Chr05	irgsp1_rep	mRNA	29584835	29586021	.	-	.	ID=Os05t0594100-02;Name=Os05t0594100-02;Locus_id=Os05g0594100;Note=Similar to GDA2 protein.;Transcript_evidence=AK060122 (DDBJ%2C Best hit);ORF_evidence=NP_001150270.1 (RefSeq);InterPro=Development/cell death domain (IPR013989);NIAS_FLcDNA=006-308-G03;Expression=AK060122;TENOR=Os05t0594100-02;KEGG=Os05t0594100-02
Chr05	irgsp1_rep	five_prime_UTR	29585910	29586021	.	-	.	Parent=Os05t0594100-02
Chr05	irgsp1_rep	CDS	29585076	29585909	.	-	0	Parent=Os05t0594100-02
Chr05	irgsp1_rep	three_prime_UTR	29584835	29585075	.	-	.	Parent=Os05t0594100-02
Chr05	irgsp1_rep	mRNA	29588659	29593839	.	-	.	ID=Os05t0594200-01;Name=Os05t0594200-01;Locus_id=Os05g0594200;CGSNL Gene Symbol=CAX1B;CGSNL Gene Name=Ca(2+)/H(+) EXCHANGER 1B;Oryzabase Gene Symbol Synonym(s)=OsCAX1b%2C CAX1b%2C CAX3%2C OsNCX10%2C NCX10;Oryzabase Gene Name Synonym(s)=Vacuolar cation/proton exchanger 1b%2C Ca(2+)/H(+) exchanger 1b%2C cation/H+ exchanger 1b%2C Na+/Ca2+ Exchanger 10%2C Sodium/calcium exchanger 10;Note=Similar to Cation/proton exchanger 1a.;Transcript_evidence=AK069021 (DDBJ%2C Best hit);ORF_evidence=Q5TKG3 (UniProt);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: cation transmembrane transporter activity (GO:0008324);InterPro=Calcium/proton exchanger (IPR004713),Calcium/proton exchanger superfamily (IPR004798),Sodium/calcium exchanger membrane region (IPR004837);NIAS_FLcDNA=J013170B16;Oryzabase=8980;Expression=AK069021;TENOR=Os05t0594200-01;KEGG=Os05t0594200-01
Chr05	irgsp1_rep	five_prime_UTR	29593325	29593839	.	-	.	Parent=Os05t0594200-01
Chr05	irgsp1_rep	CDS	29593043	29593324	.	-	0	Parent=Os05t0594200-01
Chr05	irgsp1_rep	CDS	29591612	29591679	.	-	0	Parent=Os05t0594200-01
Chr05	irgsp1_rep	CDS	29591231	29591259	.	-	1	Parent=Os05t0594200-01
Chr05	irgsp1_rep	CDS	29590727	29591145	.	-	2	Parent=Os05t0594200-01
Chr05	irgsp1_rep	CDS	29590495	29590635	.	-	0	Parent=Os05t0594200-01
Chr05	irgsp1_rep	CDS	29590235	29590351	.	-	0	Parent=Os05t0594200-01
Chr05	irgsp1_rep	CDS	29590076	29590129	.	-	0	Parent=Os05t0594200-01
Chr05	irgsp1_rep	CDS	29589556	29589672	.	-	0	Parent=Os05t0594200-01
Chr05	irgsp1_rep	CDS	29589336	29589429	.	-	0	Parent=Os05t0594200-01
Chr05	irgsp1_rep	CDS	29589148	29589188	.	-	2	Parent=Os05t0594200-01
Chr05	irgsp1_rep	three_prime_UTR	29588659	29589147	.	-	.	Parent=Os05t0594200-01
Chr05	irgsp1_rep	mRNA	29589547	29590948	.	+	.	ID=Os05t0594300-00;Name=Os05t0594300-00;Locus_id=Os05g0594300;Note=Hypothetical protein.;Transcript_evidence=AK368409 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0594300-00
Chr05	irgsp1_rep	five_prime_UTR	29589547	29589720	.	+	.	Parent=Os05t0594300-00
Chr05	irgsp1_rep	five_prime_UTR	29590049	29590121	.	+	.	Parent=Os05t0594300-00
Chr05	irgsp1_rep	five_prime_UTR	29590232	29590256	.	+	.	Parent=Os05t0594300-00
Chr05	irgsp1_rep	CDS	29590257	29590379	.	+	0	Parent=Os05t0594300-00
Chr05	irgsp1_rep	CDS	29590528	29590580	.	+	0	Parent=Os05t0594300-00
Chr05	irgsp1_rep	CDS	29590694	29590778	.	+	1	Parent=Os05t0594300-00
Chr05	irgsp1_rep	three_prime_UTR	29590779	29590948	.	+	.	Parent=Os05t0594300-00
Chr05	irgsp1_rep	mRNA	29595609	29601356	.	-	.	ID=Os05t0594500-01;Name=Os05t0594500-01;Locus_id=Os05g0594500;Note=Invasin/intimin cell-adhesion domain containing protein.;Transcript_evidence=AK067256 (DDBJ%2C Best hit);ORF_evidence=B8AXH3 (UniProt);NIAS_FLcDNA=J013097I21;Expression=AK067256;TENOR=Os05t0594500-01;KEGG=Os05t0594500-01
Chr05	irgsp1_rep	five_prime_UTR	29600942	29601356	.	-	.	Parent=Os05t0594500-01
Chr05	irgsp1_rep	CDS	29600729	29600941	.	-	0	Parent=Os05t0594500-01
Chr05	irgsp1_rep	CDS	29599872	29600049	.	-	0	Parent=Os05t0594500-01
Chr05	irgsp1_rep	CDS	29599537	29599670	.	-	2	Parent=Os05t0594500-01
Chr05	irgsp1_rep	CDS	29599234	29599435	.	-	0	Parent=Os05t0594500-01
Chr05	irgsp1_rep	CDS	29598901	29599139	.	-	2	Parent=Os05t0594500-01
Chr05	irgsp1_rep	CDS	29598692	29598803	.	-	0	Parent=Os05t0594500-01
Chr05	irgsp1_rep	CDS	29598439	29598580	.	-	2	Parent=Os05t0594500-01
Chr05	irgsp1_rep	CDS	29598213	29598355	.	-	1	Parent=Os05t0594500-01
Chr05	irgsp1_rep	CDS	29597597	29597766	.	-	2	Parent=Os05t0594500-01
Chr05	irgsp1_rep	CDS	29595749	29597512	.	-	0	Parent=Os05t0594500-01
Chr05	irgsp1_rep	three_prime_UTR	29595609	29595748	.	-	.	Parent=Os05t0594500-01
Chr05	irgsp1_rep	mRNA	29595627	29599484	.	-	.	ID=Os05t0594500-02;Name=Os05t0594500-02;Locus_id=Os05g0594500;Note=Hypothetical conserved gene.;Transcript_evidence=AK100617 (DDBJ%2C Best hit);ORF_evidence=B8AXH3 (UniProt);NIAS_FLcDNA=J023108C21;Expression=AK100617;TENOR=Os05t0594500-02;KEGG=Os05t0594500-02
Chr05	irgsp1_rep	five_prime_UTR	29599484	29599484	.	-	.	Parent=Os05t0594500-02
Chr05	irgsp1_rep	CDS	29599234	29599483	.	-	0	Parent=Os05t0594500-02
Chr05	irgsp1_rep	CDS	29598901	29599139	.	-	2	Parent=Os05t0594500-02
Chr05	irgsp1_rep	CDS	29598692	29598803	.	-	0	Parent=Os05t0594500-02
Chr05	irgsp1_rep	CDS	29598439	29598580	.	-	2	Parent=Os05t0594500-02
Chr05	irgsp1_rep	CDS	29598213	29598355	.	-	1	Parent=Os05t0594500-02
Chr05	irgsp1_rep	CDS	29597597	29597766	.	-	2	Parent=Os05t0594500-02
Chr05	irgsp1_rep	CDS	29595749	29597512	.	-	0	Parent=Os05t0594500-02
Chr05	irgsp1_rep	three_prime_UTR	29595627	29595748	.	-	.	Parent=Os05t0594500-02
Chr05	irgsp1_rep	mRNA	29608188	29616332	.	+	.	ID=Os05t0594700-01;Name=Os05t0594700-01;Locus_id=Os05g0594700;RAP-DB Gene Symbol Synonym(s)=OSCA1.2%2C OsOSCA1.2;RAP-DB Gene Name Synonym(s)=hyperosmolality-gated calcium-permeable channel 1.2;CGSNL Gene Symbol=OSCA1.2;CGSNL Gene Name=HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 1.2;Oryzabase Gene Symbol Synonym(s)=OsOSCA1.2%2C OsIOSCA1.2%2C OsDDP6%2C DDP6%2C OsDDP6.1%2C OsDDP6.2;Oryzabase Gene Name Synonym(s)=Hyperosmolality-gated calcium-permeable channel 1.2%2C DUF221 Domain containing Protein 6;Note=Hyperosmolality-gated calcium-permeable channel%2C Osmolality-sensitive OSCA channel;Transcript_evidence=AK067992;ORF_evidence=A0A097NUQ8,Q5TKG1;GO=Cellular Component: membrane (GO:0016020);InterPro=Calcium permeable stress-gated cation channel 1%2C N-terminal transmembrane domain (IPR032880),10TM putative phosphate transporter%2C cytosolic domain (IPR027815),Calcium-dependent channel%2C 7TM region%2C putative phosphate (IPR003864);NIAS_FLcDNA=J013122B14;Manual Curation=June 25%2C 2019;Literature_PMID=31227607,25162526;Oryzabase=19652;Expression=AK067992;TENOR=Os05t0594700-01;KEGG=Os05t0594700-01;Subcellular location=plasma membrane (GO:0005886)
Chr05	irgsp1_rep	five_prime_UTR	29608188	29608399	.	+	.	Parent=Os05t0594700-01
Chr05	irgsp1_rep	five_prime_UTR	29609620	29609638	.	+	.	Parent=Os05t0594700-01
Chr05	irgsp1_rep	CDS	29609639	29609952	.	+	0	Parent=Os05t0594700-01
Chr05	irgsp1_rep	CDS	29610291	29610437	.	+	1	Parent=Os05t0594700-01
Chr05	irgsp1_rep	CDS	29610979	29611114	.	+	1	Parent=Os05t0594700-01
Chr05	irgsp1_rep	CDS	29611423	29611524	.	+	0	Parent=Os05t0594700-01
Chr05	irgsp1_rep	CDS	29612126	29612245	.	+	0	Parent=Os05t0594700-01
Chr05	irgsp1_rep	CDS	29612358	29612438	.	+	0	Parent=Os05t0594700-01
Chr05	irgsp1_rep	CDS	29612903	29613243	.	+	0	Parent=Os05t0594700-01
Chr05	irgsp1_rep	CDS	29613394	29613639	.	+	1	Parent=Os05t0594700-01
Chr05	irgsp1_rep	CDS	29614520	29614844	.	+	1	Parent=Os05t0594700-01
Chr05	irgsp1_rep	CDS	29615448	29615681	.	+	0	Parent=Os05t0594700-01
Chr05	irgsp1_rep	CDS	29615762	29616016	.	+	0	Parent=Os05t0594700-01
Chr05	irgsp1_rep	three_prime_UTR	29616017	29616332	.	+	.	Parent=Os05t0594700-01
Chr05	irgsp1_rep	mRNA	29609464	29616217	.	+	.	ID=Os05t0594700-02;Name=Os05t0594700-02;Locus_id=Os05g0594700;CGSNL Gene Symbol=OSCA1.2;CGSNL Gene Name=HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 1.2;Oryzabase Gene Symbol Synonym(s)=OsOSCA1.2%2C OsIOSCA1.2%2C OsDDP6%2C DDP6%2C OsDDP6.1%2C OsDDP6.2;Oryzabase Gene Name Synonym(s)=Hyperosmolality-gated calcium-permeable channel 1.2%2C DUF221 Domain containing Protein 6;Note=Similar to Hv711N16.16 (Fragment).;Transcript_evidence=AK073648 (DDBJ%2C Best hit);ORF_evidence=B6SS81 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Domain of unknown function DUF221 (IPR003864);NIAS_FLcDNA=J033048M19;Oryzabase=19652;Expression=AK073648;TENOR=Os05t0594700-02;KEGG=Os05t0594700-02
Chr05	irgsp1_rep	five_prime_UTR	29609464	29609638	.	+	.	Parent=Os05t0594700-02
Chr05	irgsp1_rep	CDS	29609639	29609952	.	+	0	Parent=Os05t0594700-02
Chr05	irgsp1_rep	CDS	29610291	29610437	.	+	1	Parent=Os05t0594700-02
Chr05	irgsp1_rep	CDS	29610979	29611114	.	+	1	Parent=Os05t0594700-02
Chr05	irgsp1_rep	CDS	29611423	29611524	.	+	0	Parent=Os05t0594700-02
Chr05	irgsp1_rep	CDS	29612126	29612245	.	+	0	Parent=Os05t0594700-02
Chr05	irgsp1_rep	CDS	29612358	29612438	.	+	0	Parent=Os05t0594700-02
Chr05	irgsp1_rep	CDS	29612903	29613243	.	+	0	Parent=Os05t0594700-02
Chr05	irgsp1_rep	CDS	29613394	29613639	.	+	1	Parent=Os05t0594700-02
Chr05	irgsp1_rep	CDS	29614520	29614844	.	+	1	Parent=Os05t0594700-02
Chr05	irgsp1_rep	CDS	29615448	29615681	.	+	0	Parent=Os05t0594700-02
Chr05	irgsp1_rep	CDS	29615762	29616016	.	+	0	Parent=Os05t0594700-02
Chr05	irgsp1_rep	three_prime_UTR	29616017	29616217	.	+	.	Parent=Os05t0594700-02
Chr05	irgsp1_rep	mRNA	29609622	29613537	.	-	.	ID=Os05t0594750-00;Name=Os05t0594750-00;Locus_id=Os05g0594750;Note=Non-protein coding transcript.;Transcript_evidence=AK376405 (DDBJ);ORF_evidence=NONE;TENOR=Os05t0594750-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	exon	29613384	29613537	.	-	.	Parent=Os05t0594750-00
Chr05	irgsp1_rep	exon	29612826	29613231	.	-	.	Parent=Os05t0594750-00
Chr05	irgsp1_rep	exon	29612135	29612251	.	-	.	Parent=Os05t0594750-00
Chr05	irgsp1_rep	exon	29611422	29611529	.	-	.	Parent=Os05t0594750-00
Chr05	irgsp1_rep	exon	29610988	29611113	.	-	.	Parent=Os05t0594750-00
Chr05	irgsp1_rep	exon	29610282	29610443	.	-	.	Parent=Os05t0594750-00
Chr05	irgsp1_rep	exon	29609622	29609944	.	-	.	Parent=Os05t0594750-00
Chr05	irgsp1_rep	mRNA	29617903	29622923	.	-	.	ID=Os05t0594800-01;Name=Os05t0594800-01;Locus_id=Os05g0594800;Note=Similar to Adhesion regulating molecule conserved region family protein.;Transcript_evidence=AK058332 (DDBJ%2C Best hit),AK068013 (DDBJ%2C Best hit);ORF_evidence=B4G1K7 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Cellular Component: cytoplasm (GO:0005737);InterPro=26S proteasome complex ubiquitin receptor%2C subunit Rpn13 (IPR006773);NIAS_FLcDNA=001-014-C10,J013129L24;TENOR=Os05t0594800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	29622820	29622923	.	-	.	Parent=Os05t0594800-01
Chr05	irgsp1_rep	five_prime_UTR	29621960	29621992	.	-	.	Parent=Os05t0594800-01
Chr05	irgsp1_rep	CDS	29621936	29621959	.	-	0	Parent=Os05t0594800-01
Chr05	irgsp1_rep	CDS	29621060	29621152	.	-	0	Parent=Os05t0594800-01
Chr05	irgsp1_rep	CDS	29620864	29620923	.	-	0	Parent=Os05t0594800-01
Chr05	irgsp1_rep	CDS	29620638	29620676	.	-	0	Parent=Os05t0594800-01
Chr05	irgsp1_rep	CDS	29620470	29620544	.	-	0	Parent=Os05t0594800-01
Chr05	irgsp1_rep	CDS	29620310	29620376	.	-	0	Parent=Os05t0594800-01
Chr05	irgsp1_rep	CDS	29620164	29620233	.	-	2	Parent=Os05t0594800-01
Chr05	irgsp1_rep	CDS	29619678	29619796	.	-	1	Parent=Os05t0594800-01
Chr05	irgsp1_rep	CDS	29619562	29619585	.	-	2	Parent=Os05t0594800-01
Chr05	irgsp1_rep	CDS	29619388	29619479	.	-	2	Parent=Os05t0594800-01
Chr05	irgsp1_rep	CDS	29619229	29619306	.	-	0	Parent=Os05t0594800-01
Chr05	irgsp1_rep	CDS	29619082	29619136	.	-	0	Parent=Os05t0594800-01
Chr05	irgsp1_rep	CDS	29618546	29618670	.	-	2	Parent=Os05t0594800-01
Chr05	irgsp1_rep	three_prime_UTR	29617903	29618545	.	-	.	Parent=Os05t0594800-01
Chr05	irgsp1_rep	mRNA	29623082	29625108	.	+	.	ID=Os05t0594900-01;Name=Os05t0594900-01;Locus_id=Os05g0594900;Oryzabase Gene Name Synonym(s)=Sm gene%2C Sm family protein;Note=Similar to U6 snRNA-associated Sm-like protein LSm8.;Transcript_evidence=AK121070 (DDBJ%2C Best hit);ORF_evidence=B4FNR5 (UniProt);InterPro=Like-Sm ribonucleoprotein (LSM) domain (IPR001163),Like-Sm ribonucleoprotein (LSM) domain%2C eukaryotic/archaea-type (IPR006649),Like-Sm ribonucleoprotein (LSM)-related domain (IPR010920);NIAS_FLcDNA=J023061K04;Oryzabase=15649;Expression=AK121070;TENOR=Os05t0594900-01;KEGG=Os05t0594900-01
Chr05	irgsp1_rep	five_prime_UTR	29623082	29623191	.	+	.	Parent=Os05t0594900-01
Chr05	irgsp1_rep	CDS	29623192	29623231	.	+	0	Parent=Os05t0594900-01
Chr05	irgsp1_rep	CDS	29623337	29623377	.	+	2	Parent=Os05t0594900-01
Chr05	irgsp1_rep	CDS	29623471	29623545	.	+	0	Parent=Os05t0594900-01
Chr05	irgsp1_rep	CDS	29624520	29624572	.	+	0	Parent=Os05t0594900-01
Chr05	irgsp1_rep	CDS	29624710	29624800	.	+	1	Parent=Os05t0594900-01
Chr05	irgsp1_rep	three_prime_UTR	29624801	29625108	.	+	.	Parent=Os05t0594900-01
Chr05	irgsp1_rep	mRNA	29625036	29625780	.	-	.	ID=Os05t0595000-01;Name=Os05t0595000-01;Locus_id=Os05g0595000;CGSNL Gene Symbol=PR1-51;CGSNL Gene Name=PATHOGENESIS-RELATED GENE 1-51;Oryzabase Gene Symbol Synonym(s)=OsPR1#051%2C OsPR1-51;Oryzabase Gene Name Synonym(s)=pathogenesis-related protein 1-51%2C PR protein 1-51;Note=Allergen V5/Tpx-1 related family protein.;Transcript_evidence=AK071326 (DDBJ%2C Best hit);ORF_evidence=A2Y860 (UniProt);InterPro=Allergen V5/Tpx-1-related (IPR001283),CAP domain (IPR014044);NIAS_FLcDNA=J023088B21;Oryzabase=13351;Expression=AK071326;TENOR=Os05t0595000-01;KEGG=Os05t0595000-01
Chr05	irgsp1_rep	five_prime_UTR	29625738	29625780	.	-	.	Parent=Os05t0595000-01
Chr05	irgsp1_rep	CDS	29625141	29625737	.	-	0	Parent=Os05t0595000-01
Chr05	irgsp1_rep	three_prime_UTR	29625036	29625140	.	-	.	Parent=Os05t0595000-01
Chr05	irgsp1_rep	mRNA	29632006	29635661	.	+	.	ID=Os05t0595100-01;Name=Os05t0595100-01;Locus_id=Os05g0595100;RAP-DB Gene Symbol Synonym(s)=OsUGE1%2C OsUGE-1%2C UGE1%2C UGE-1;RAP-DB Gene Name Synonym(s)=UDP-glucose epimerase 1%2C UDP-glucose 4-epimerase 1;CGSNL Gene Symbol=UGE1;CGSNL Gene Name=UDP-GLUCOSE EPIMERASE 1;Oryzabase Gene Symbol Synonym(s)=OsUGE1%2C OsUGE-1%2C UGE-1;Oryzabase Gene Name Synonym(s)=UDP-glucose epimerase 1%2C UDP-glucose 4-epimerase 1;Note=Uridine-diphospho-(UDP)-glucose 4-epimerase%2C Cell wall carbohydrate partitioning during nitrogen (N) limitation;Transcript_evidence=AB087745;ORF_evidence=Q8LNZ3;GO=Biological Process: galactose metabolic process (GO:0006012),Molecular Function: UDP-glucose 4-epimerase activity (GO:0003978);InterPro=UDP-glucose 4-epimerase GalE (IPR005886),NAD(P)-binding domain (IPR016040);Manual Curation=June 9%2C 2016;Literature_PMID=24788752;Oryzabase=12410;TENOR=Os05t0595100-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	29632006	29632091	.	+	.	Parent=Os05t0595100-01
Chr05	irgsp1_rep	CDS	29632092	29632286	.	+	0	Parent=Os05t0595100-01
Chr05	irgsp1_rep	CDS	29633017	29633066	.	+	0	Parent=Os05t0595100-01
Chr05	irgsp1_rep	CDS	29633620	29633755	.	+	1	Parent=Os05t0595100-01
Chr05	irgsp1_rep	CDS	29634256	29634357	.	+	0	Parent=Os05t0595100-01
Chr05	irgsp1_rep	CDS	29634478	29634705	.	+	0	Parent=Os05t0595100-01
Chr05	irgsp1_rep	CDS	29634785	29634869	.	+	0	Parent=Os05t0595100-01
Chr05	irgsp1_rep	CDS	29634973	29635055	.	+	2	Parent=Os05t0595100-01
Chr05	irgsp1_rep	CDS	29635179	29635270	.	+	0	Parent=Os05t0595100-01
Chr05	irgsp1_rep	CDS	29635373	29635466	.	+	1	Parent=Os05t0595100-01
Chr05	irgsp1_rep	three_prime_UTR	29635467	29635661	.	+	.	Parent=Os05t0595100-01
Chr05	irgsp1_rep	mRNA	29634921	29638262	.	-	.	ID=Os05t0595200-01;Name=Os05t0595200-01;Locus_id=Os05g0595200;CGSNL Gene Symbol=PR1-52;CGSNL Gene Name=PATHOGENESIS-RELATED GENE 1-52;Oryzabase Gene Symbol Synonym(s)=OsPR1#052%2C OsPR1-52;Oryzabase Gene Name Synonym(s)=pathogenesis-related protein 1-52%2C PR protein 1-52;Note=Allergen V5/Tpx-1 related family protein.;Transcript_evidence=AK070317 (DDBJ%2C Best hit);ORF_evidence=B8AXH6 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Allergen V5/Tpx-1-related (IPR001283),CAP domain (IPR014044),Allergen V5/Tpx-1-related%2C conserved site (IPR018244);NIAS_FLcDNA=J023052A08;Oryzabase=13352;Expression=AK070317;TENOR=Os05t0595200-01;KEGG=Os05t0595200-01
Chr05	irgsp1_rep	five_prime_UTR	29638098	29638262	.	-	.	Parent=Os05t0595200-01
Chr05	irgsp1_rep	CDS	29637369	29638097	.	-	0	Parent=Os05t0595200-01
Chr05	irgsp1_rep	CDS	29635407	29635520	.	-	0	Parent=Os05t0595200-01
Chr05	irgsp1_rep	CDS	29635104	29635259	.	-	0	Parent=Os05t0595200-01
Chr05	irgsp1_rep	three_prime_UTR	29634921	29635103	.	-	.	Parent=Os05t0595200-01
Chr05	irgsp1_rep	mRNA	29637198	29638221	.	-	.	ID=Os05t0595200-02;Name=Os05t0595200-02;Locus_id=Os05g0595200;CGSNL Gene Symbol=PR1-52;CGSNL Gene Name=PATHOGENESIS-RELATED GENE 1-52;Oryzabase Gene Symbol Synonym(s)=OsPR1#052%2C OsPR1-52;Oryzabase Gene Name Synonym(s)=pathogenesis-related protein 1-52%2C PR protein 1-52;Note=Similar to allergen V5/Tpx-1-related family protein.;Transcript_evidence=AK100748 (DDBJ%2C Best hit);ORF_evidence=Q5TKF6 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Allergen V5/Tpx-1-related (IPR001283),CAP domain (IPR014044),Allergen V5/Tpx-1-related%2C conserved site (IPR018244);NIAS_FLcDNA=J023118J22;Oryzabase=13352;Expression=AK100748;TENOR=Os05t0595200-02;KEGG=Os05t0595200-02
Chr05	irgsp1_rep	five_prime_UTR	29638098	29638221	.	-	.	Parent=Os05t0595200-02
Chr05	irgsp1_rep	CDS	29637354	29638097	.	-	0	Parent=Os05t0595200-02
Chr05	irgsp1_rep	three_prime_UTR	29637198	29637353	.	-	.	Parent=Os05t0595200-02
Chr05	irgsp1_rep	mRNA	29656681	29659085	.	+	.	ID=Os05t0595300-01;Name=Os05t0595300-01;Locus_id=Os05g0595300;RAP-DB Gene Symbol Synonym(s)=NRR%2C NRRb;RAP-DB Gene Name Synonym(s)=nutrition response and root growth b;Oryzabase Gene Symbol Synonym(s)=OsNRR%2C NRR%2C NRRa%2C NRRb%2C OsCCT18%2C OsCMF6%2C CCT18%2C CMF6%2C CRCT%2C Os CRCT;Oryzabase Gene Name Synonym(s)=nutrition response and root growth%2C CCT domain-containing gene 18%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 18%2C CCT domain protein 18%2C CCT MOTIF FAMILY (CMF) gene 6%2C "CO2-Responsive CONSTANS%2C CONSTANSlike%2C and Time of Chlorophyll a/b Binding Protein1";Note=NRR alternative splicing variant%2C Regulation of root development in response to macronutrient deficiency;Transcript_evidence=AK059614;ORF_evidence=Q5TKF5;NIAS_FLcDNA=001-030-F12;Manual Curation=May 25%2C 2017;Literature_PMID=21859960;Oryzabase=12241;Expression=AK059614;TENOR=Os05t0595300-01;KEGG=Os05t0595300-01
Chr05	irgsp1_rep	five_prime_UTR	29656681	29656755	.	+	.	Parent=Os05t0595300-01
Chr05	irgsp1_rep	CDS	29656756	29656887	.	+	0	Parent=Os05t0595300-01
Chr05	irgsp1_rep	CDS	29658392	29658931	.	+	0	Parent=Os05t0595300-01
Chr05	irgsp1_rep	three_prime_UTR	29658932	29659085	.	+	.	Parent=Os05t0595300-01
Chr05	irgsp1_rep	mRNA	29656683	29660315	.	+	.	ID=Os05t0595300-02;Name=Os05t0595300-02;Locus_id=Os05g0595300;RAP-DB Gene Symbol Synonym(s)=CRCT%2C NRR%2C NRRa;RAP-DB Gene Name Synonym(s)="CO2-Responsive CONSTANS%2C CONSTANSlike%2C and Time of Chlorophyll a/b Binding Protein1"%2C "CO<sub>2</sub>-Responsive CONSTANS%2C CONSTANSlike%2C and Time of Chlorophyll a/b Binding Protein1"%2C nutrition response and root growth a;Oryzabase Gene Symbol Synonym(s)=OsNRR%2C NRR%2C NRRa%2C NRRb%2C OsCCT18%2C OsCMF6%2C CCT18%2C CMF6%2C CRCT%2C Os CRCT;Oryzabase Gene Name Synonym(s)=nutrition response and root growth%2C CCT domain-containing gene 18%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 18%2C CCT domain protein 18%2C CCT MOTIF FAMILY (CMF) gene 6%2C "CO2-Responsive CONSTANS%2C CONSTANSlike%2C and Time of Chlorophyll a/b Binding Protein1";Note=CCT domain-containing protein%2C Regulator of starch synthesis%2C Regulation of root development in response to macronutrient deficiency;Transcript_evidence=AK121601;ORF_evidence=Q0DFE5;GO=Molecular Function: protein binding (GO:0005515);InterPro=CCT domain (IPR010402);NIAS_FLcDNA=J033040P21;Manual Curation=May 25%2C 2017;Literature_PMID=25717036,21859960;Oryzabase=12241;Expression=AK121601;TENOR=Os05t0595300-02
Chr05	irgsp1_rep	five_prime_UTR	29656683	29656755	.	+	.	Parent=Os05t0595300-02
Chr05	irgsp1_rep	CDS	29656756	29656887	.	+	0	Parent=Os05t0595300-02
Chr05	irgsp1_rep	CDS	29658392	29658925	.	+	0	Parent=Os05t0595300-02
Chr05	irgsp1_rep	CDS	29659408	29659572	.	+	0	Parent=Os05t0595300-02
Chr05	irgsp1_rep	CDS	29659761	29659856	.	+	0	Parent=Os05t0595300-02
Chr05	irgsp1_rep	three_prime_UTR	29659857	29660315	.	+	.	Parent=Os05t0595300-02
Chr05	irgsp1_rep	mRNA	29660590	29663517	.	-	.	ID=Os05t0595400-01;Name=Os05t0595400-01;Locus_id=Os05g0595400;RAP-DB Gene Symbol Synonym(s)=OsNDPK3;RAP-DB Gene Name Synonym(s)=NUCLEOSIDE DIPHOSPHATE KINASE 3%2C Nucleoside diphosphate kinase 3;CGSNL Gene Symbol=NDPK3;CGSNL Gene Name=NUCLEOSIDE DIPHOSPHATE KINASE 3;Oryzabase Gene Symbol Synonym(s)=OsNDPK3;Oryzabase Gene Name Synonym(s)=nucleoside diphosphate kinase 3;Note=Nucleoside diphosphate kinase;Transcript_evidence=AK066391;ORF_evidence=Q5TKF4;GO=Biological Process: nucleoside diphosphate phosphorylation (GO:0006165),Biological Process: GTP biosynthetic process (GO:0006183),Biological Process: UTP biosynthetic process (GO:0006228),Biological Process: CTP biosynthetic process (GO:0006241),Molecular Function: nucleoside diphosphate kinase activity (GO:0004550);InterPro=Nucleoside diphosphate kinase (IPR001564),Nucleoside diphosphate kinase-like domain (IPR034907),Nucleoside diphosphate kinase%2C active site (IPR023005);NIAS_FLcDNA=J013067E14;Manual Curation=May 24%2C 2017;Literature_PMID=21897044;Oryzabase=9878;Expression=AK066391;TENOR=Os05t0595400-01;KEGG=Os05t0595400-01 (EC:2.7.4.6);Subcellular location=mitochondrion (GO:0005739)
Chr05	irgsp1_rep	five_prime_UTR	29663304	29663517	.	-	.	Parent=Os05t0595400-01
Chr05	irgsp1_rep	CDS	29663210	29663303	.	-	0	Parent=Os05t0595400-01
Chr05	irgsp1_rep	CDS	29662982	29663113	.	-	2	Parent=Os05t0595400-01
Chr05	irgsp1_rep	CDS	29662843	29662880	.	-	2	Parent=Os05t0595400-01
Chr05	irgsp1_rep	CDS	29662666	29662716	.	-	0	Parent=Os05t0595400-01
Chr05	irgsp1_rep	CDS	29661847	29662014	.	-	0	Parent=Os05t0595400-01
Chr05	irgsp1_rep	CDS	29661233	29661345	.	-	0	Parent=Os05t0595400-01
Chr05	irgsp1_rep	CDS	29660866	29660989	.	-	1	Parent=Os05t0595400-01
Chr05	irgsp1_rep	three_prime_UTR	29660590	29660865	.	-	.	Parent=Os05t0595400-01
Chr05	irgsp1_rep	mRNA	29660586	29663383	.	-	.	ID=Os05t0595400-02;Name=Os05t0595400-02;Locus_id=Os05g0595400;CGSNL Gene Symbol=NDPK3;CGSNL Gene Name=NUCLEOSIDE DIPHOSPHATE KINASE 3;Oryzabase Gene Symbol Synonym(s)=OsNDPK3;Oryzabase Gene Name Synonym(s)=nucleoside diphosphate kinase 3;Note=Similar to Nucleoside diphosphate kinase III (EC 2.7.4.6) (NDK III) (NDP kinase III) (NDPK III).;Transcript_evidence=AK061858 (DDBJ%2C Best hit);ORF_evidence=B9FLX9 (UniProt);GO=Biological Process: nucleoside diphosphate phosphorylation (GO:0006165),Biological Process: GTP biosynthetic process (GO:0006183),Biological Process: UTP biosynthetic process (GO:0006228),Biological Process: CTP biosynthetic process (GO:0006241),Molecular Function: nucleoside diphosphate kinase activity (GO:0004550),Molecular Function: ATP binding (GO:0005524);InterPro=Nucleoside diphosphate kinase (IPR001564),Nucleoside diphosphate kinase%2C active site (IPR023005);NIAS_FLcDNA=001-040-G07;Oryzabase=9878;TENOR=Os05t0595400-02
Chr05	irgsp1_rep	five_prime_UTR	29663304	29663383	.	-	.	Parent=Os05t0595400-02
Chr05	irgsp1_rep	CDS	29663210	29663303	.	-	0	Parent=Os05t0595400-02
Chr05	irgsp1_rep	CDS	29662982	29663113	.	-	2	Parent=Os05t0595400-02
Chr05	irgsp1_rep	CDS	29662843	29662880	.	-	2	Parent=Os05t0595400-02
Chr05	irgsp1_rep	CDS	29662666	29662716	.	-	0	Parent=Os05t0595400-02
Chr05	irgsp1_rep	CDS	29661847	29662014	.	-	0	Parent=Os05t0595400-02
Chr05	irgsp1_rep	CDS	29661233	29661345	.	-	0	Parent=Os05t0595400-02
Chr05	irgsp1_rep	CDS	29660866	29660989	.	-	1	Parent=Os05t0595400-02
Chr05	irgsp1_rep	three_prime_UTR	29660586	29660865	.	-	.	Parent=Os05t0595400-02
Chr05	irgsp1_rep	mRNA	29660764	29662718	.	+	.	ID=Os05t0595450-00;Name=Os05t0595450-00;Locus_id=Os05g0595450;Note=Hypothetical gene.;Transcript_evidence=BT017115 (DDBJ);ORF_evidence=longestORF;TENOR=Os05t0595450-00
Chr05	irgsp1_rep	five_prime_UTR	29660764	29660980	.	+	.	Parent=Os05t0595450-00
Chr05	irgsp1_rep	CDS	29660981	29660985	.	+	0	Parent=Os05t0595450-00
Chr05	irgsp1_rep	CDS	29661226	29661355	.	+	1	Parent=Os05t0595450-00
Chr05	irgsp1_rep	CDS	29661856	29662016	.	+	0	Parent=Os05t0595450-00
Chr05	irgsp1_rep	CDS	29662669	29662718	.	+	1	Parent=Os05t0595450-00
Chr05	irgsp1_rep	mRNA	29664055	29667564	.	-	.	ID=Os05t0595500-01;Name=Os05t0595500-01;Locus_id=Os05g0595500;Note=Pleckstrin homology-type domain containing protein.;Transcript_evidence=AK242184 (DDBJ%2C Best hit);ORF_evidence=NP_001078437.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Pleckstrin homology domain (IPR001849),Pleckstrin homology-type (IPR011993);NIAS_FLcDNA=J075161E10;TENOR=Os05t0595500-01;KEGG=Os05t0595500-01
Chr05	irgsp1_rep	five_prime_UTR	29667394	29667564	.	-	.	Parent=Os05t0595500-01
Chr05	irgsp1_rep	five_prime_UTR	29666481	29666514	.	-	.	Parent=Os05t0595500-01
Chr05	irgsp1_rep	CDS	29666359	29666480	.	-	0	Parent=Os05t0595500-01
Chr05	irgsp1_rep	CDS	29666155	29666266	.	-	1	Parent=Os05t0595500-01
Chr05	irgsp1_rep	CDS	29665982	29666064	.	-	0	Parent=Os05t0595500-01
Chr05	irgsp1_rep	CDS	29665808	29665871	.	-	1	Parent=Os05t0595500-01
Chr05	irgsp1_rep	CDS	29665606	29665723	.	-	0	Parent=Os05t0595500-01
Chr05	irgsp1_rep	CDS	29664581	29664735	.	-	2	Parent=Os05t0595500-01
Chr05	irgsp1_rep	CDS	29664367	29664465	.	-	0	Parent=Os05t0595500-01
Chr05	irgsp1_rep	three_prime_UTR	29664055	29664366	.	-	.	Parent=Os05t0595500-01
Chr05	irgsp1_rep	mRNA	29677769	29681781	.	-	.	ID=Os05t0595800-00;Name=Os05t0595800-00;Locus_id=Os05g0595800;Note=Serine-threonine/tyrosine-protein kinase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001174552.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Protein kinase-like domain (IPR011009);TENOR=Os05t0595800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	29679555	29681781	.	-	0	Parent=Os05t0595800-00
Chr05	irgsp1_rep	CDS	29677769	29678196	.	-	2	Parent=Os05t0595800-00
Chr05	irgsp1_rep	mRNA	29688450	29690396	.	+	.	ID=Os05t0596000-01;Name=Os05t0596000-01;Locus_id=Os05g0596000;Note=Peptidase A1 domain containing protein.;Transcript_evidence=AK121242 (DDBJ%2C Best hit),AK068911 (DDBJ%2C Best hit);ORF_evidence=NP_001149154.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J023099A02,J023001F07;Expression=AK121242;TENOR=Os05t0596000-01;KEGG=Os05t0596000-01
Chr05	irgsp1_rep	five_prime_UTR	29688450	29688568	.	+	.	Parent=Os05t0596000-01
Chr05	irgsp1_rep	CDS	29688569	29690176	.	+	0	Parent=Os05t0596000-01
Chr05	irgsp1_rep	three_prime_UTR	29690177	29690396	.	+	.	Parent=Os05t0596000-01
Chr05	irgsp1_rep	mRNA	29693476	29694622	.	-	.	ID=Os05t0596200-01;Name=Os05t0596200-01;Locus_id=Os05g0596200;Note=Similar to cDNA clone:001-104-D04%2C full insert sequence.;Transcript_evidence=AK107887 (DDBJ%2C Best hit);ORF_evidence=B7E7K4 (UniProt);NIAS_FLcDNA=002-134-E01;TENOR=Os05t0596200-01
Chr05	irgsp1_rep	five_prime_UTR	29694418	29694622	.	-	.	Parent=Os05t0596200-01
Chr05	irgsp1_rep	CDS	29694352	29694417	.	-	0	Parent=Os05t0596200-01
Chr05	irgsp1_rep	CDS	29694111	29694227	.	-	0	Parent=Os05t0596200-01
Chr05	irgsp1_rep	CDS	29693964	29694034	.	-	0	Parent=Os05t0596200-01
Chr05	irgsp1_rep	CDS	29693476	29693525	.	-	1	Parent=Os05t0596200-01
Chr05	irgsp1_rep	mRNA	29693476	29694608	.	-	.	ID=Os05t0596200-02;Name=Os05t0596200-02;Locus_id=Os05g0596200;Note=Similar to predicted protein.;Transcript_evidence=AK062521 (DDBJ%2C Best hit);ORF_evidence=Q5TKF1 (UniProt);NIAS_FLcDNA=001-104-D04;Expression=AK062521;TENOR=Os05t0596200-02;KEGG=Os05t0596200-02
Chr05	irgsp1_rep	five_prime_UTR	29694418	29694608	.	-	.	Parent=Os05t0596200-02
Chr05	irgsp1_rep	CDS	29694352	29694417	.	-	0	Parent=Os05t0596200-02
Chr05	irgsp1_rep	CDS	29694111	29694227	.	-	0	Parent=Os05t0596200-02
Chr05	irgsp1_rep	CDS	29693828	29694034	.	-	0	Parent=Os05t0596200-02
Chr05	irgsp1_rep	three_prime_UTR	29693476	29693827	.	-	.	Parent=Os05t0596200-02
Chr05	irgsp1_rep	mRNA	29693028	29694599	.	-	.	ID=Os05t0596200-03;Name=Os05t0596200-03;Locus_id=Os05g0596200;Note=Similar to cDNA clone:001-104-D04%2C full insert sequence.;Transcript_evidence=AK108209 (DDBJ%2C Best hit);ORF_evidence=B7E7K4 (UniProt);NIAS_FLcDNA=002-140-D08;Expression=AK108209;TENOR=Os05t0596200-03;KEGG=Os05t0596200-03
Chr05	irgsp1_rep	five_prime_UTR	29694418	29694599	.	-	.	Parent=Os05t0596200-03
Chr05	irgsp1_rep	CDS	29694352	29694417	.	-	0	Parent=Os05t0596200-03
Chr05	irgsp1_rep	CDS	29694111	29694227	.	-	0	Parent=Os05t0596200-03
Chr05	irgsp1_rep	CDS	29693964	29694034	.	-	0	Parent=Os05t0596200-03
Chr05	irgsp1_rep	CDS	29693285	29693525	.	-	1	Parent=Os05t0596200-03
Chr05	irgsp1_rep	three_prime_UTR	29693028	29693284	.	-	.	Parent=Os05t0596200-03
Chr05	irgsp1_rep	mRNA	29697828	29698524	.	-	.	ID=Os05t0596300-00;Name=Os05t0596300-00;Locus_id=Os05g0596300;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G3R4 (UniProt);TENOR=Os05t0596300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	CDS	29698492	29698524	.	-	0	Parent=Os05t0596300-00
Chr05	irgsp1_rep	CDS	29697828	29698406	.	-	0	Parent=Os05t0596300-00
Chr05	irgsp1_rep	mRNA	29718210	29719693	.	+	.	ID=Os05t0596500-01;Name=Os05t0596500-01;Locus_id=Os05g0596500;Oryzabase Gene Symbol Synonym(s)=OsRFPH2-1;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPH2-1%2C RING-H2 protein 1;Note=Similar to RING-H2 finger protein ATL3I (YGHL1-C3HC4 RING fusion protein).;Transcript_evidence=AK070817 (DDBJ%2C Best hit);ORF_evidence=XP_002440385.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J023066I04;Oryzabase=11762;Expression=AK070817;TENOR=Os05t0596500-01;KEGG=Os05t0596500-01
Chr05	irgsp1_rep	five_prime_UTR	29718210	29718277	.	+	.	Parent=Os05t0596500-01
Chr05	irgsp1_rep	CDS	29718278	29719435	.	+	0	Parent=Os05t0596500-01
Chr05	irgsp1_rep	three_prime_UTR	29719436	29719693	.	+	.	Parent=Os05t0596500-01
Chr05	irgsp1_rep	mRNA	29739274	29740775	.	-	.	ID=Os05t0596600-01;Name=Os05t0596600-01;Locus_id=Os05g0596600;Oryzabase Gene Symbol Synonym(s)=SMC5;Oryzabase Gene Name Synonym(s)=structural maintenance of Chromosomes protein 5;Note=Similar to SMC5 protein.;Transcript_evidence=AK107823 (DDBJ%2C Best hit);ORF_evidence=Q8GU53 (UniProt);InterPro=RecF/RecN/SMC (IPR003395);NIAS_FLcDNA=002-133-G03;Oryzabase=13983;TENOR=Os05t0596600-01
Chr05	irgsp1_rep	five_prime_UTR	29740734	29740775	.	-	.	Parent=Os05t0596600-01
Chr05	irgsp1_rep	CDS	29740467	29740733	.	-	0	Parent=Os05t0596600-01
Chr05	irgsp1_rep	CDS	29740227	29740380	.	-	0	Parent=Os05t0596600-01
Chr05	irgsp1_rep	CDS	29740028	29740101	.	-	2	Parent=Os05t0596600-01
Chr05	irgsp1_rep	CDS	29739716	29739865	.	-	0	Parent=Os05t0596600-01
Chr05	irgsp1_rep	CDS	29739473	29739577	.	-	0	Parent=Os05t0596600-01
Chr05	irgsp1_rep	CDS	29739274	29739361	.	-	0	Parent=Os05t0596600-01
Chr05	irgsp1_rep	mRNA	29728250	29740775	.	-	.	ID=Os05t0596600-02;Name=Os05t0596600-02;Locus_id=Os05g0596600;Oryzabase Gene Symbol Synonym(s)=SMC5;Oryzabase Gene Name Synonym(s)=structural maintenance of Chromosomes protein 5;Note=Similar to SMC5 protein.;Transcript_evidence=AK121149 (DDBJ%2C Best hit);ORF_evidence=Q8GU53 (UniProt);InterPro=RecF/RecN/SMC (IPR003395);NIAS_FLcDNA=J023078H05;Oryzabase=13983;Expression=AK121149;TENOR=Os05t0596600-02;KEGG=Os05t0596600-02
Chr05	irgsp1_rep	five_prime_UTR	29740734	29740775	.	-	.	Parent=Os05t0596600-02
Chr05	irgsp1_rep	CDS	29740467	29740733	.	-	0	Parent=Os05t0596600-02
Chr05	irgsp1_rep	CDS	29740227	29740380	.	-	0	Parent=Os05t0596600-02
Chr05	irgsp1_rep	CDS	29740028	29740101	.	-	2	Parent=Os05t0596600-02
Chr05	irgsp1_rep	CDS	29739716	29739865	.	-	0	Parent=Os05t0596600-02
Chr05	irgsp1_rep	CDS	29739473	29739577	.	-	0	Parent=Os05t0596600-02
Chr05	irgsp1_rep	CDS	29739216	29739361	.	-	0	Parent=Os05t0596600-02
Chr05	irgsp1_rep	CDS	29738243	29738354	.	-	1	Parent=Os05t0596600-02
Chr05	irgsp1_rep	CDS	29738008	29738163	.	-	0	Parent=Os05t0596600-02
Chr05	irgsp1_rep	CDS	29737704	29737825	.	-	0	Parent=Os05t0596600-02
Chr05	irgsp1_rep	CDS	29737485	29737629	.	-	1	Parent=Os05t0596600-02
Chr05	irgsp1_rep	CDS	29737335	29737400	.	-	0	Parent=Os05t0596600-02
Chr05	irgsp1_rep	CDS	29736821	29736949	.	-	0	Parent=Os05t0596600-02
Chr05	irgsp1_rep	CDS	29736275	29736373	.	-	0	Parent=Os05t0596600-02
Chr05	irgsp1_rep	CDS	29736005	29736170	.	-	0	Parent=Os05t0596600-02
Chr05	irgsp1_rep	CDS	29735764	29735909	.	-	2	Parent=Os05t0596600-02
Chr05	irgsp1_rep	CDS	29735603	29735666	.	-	0	Parent=Os05t0596600-02
Chr05	irgsp1_rep	CDS	29735416	29735540	.	-	2	Parent=Os05t0596600-02
Chr05	irgsp1_rep	CDS	29735229	29735306	.	-	0	Parent=Os05t0596600-02
Chr05	irgsp1_rep	CDS	29734822	29734894	.	-	0	Parent=Os05t0596600-02
Chr05	irgsp1_rep	CDS	29734043	29734146	.	-	2	Parent=Os05t0596600-02
Chr05	irgsp1_rep	CDS	29733013	29733129	.	-	0	Parent=Os05t0596600-02
Chr05	irgsp1_rep	CDS	29730985	29731062	.	-	0	Parent=Os05t0596600-02
Chr05	irgsp1_rep	CDS	29730788	29730887	.	-	0	Parent=Os05t0596600-02
Chr05	irgsp1_rep	CDS	29730644	29730698	.	-	2	Parent=Os05t0596600-02
Chr05	irgsp1_rep	CDS	29729576	29729624	.	-	1	Parent=Os05t0596600-02
Chr05	irgsp1_rep	CDS	29729413	29729501	.	-	0	Parent=Os05t0596600-02
Chr05	irgsp1_rep	CDS	29729233	29729304	.	-	1	Parent=Os05t0596600-02
Chr05	irgsp1_rep	CDS	29729047	29729150	.	-	1	Parent=Os05t0596600-02
Chr05	irgsp1_rep	CDS	29728574	29728626	.	-	2	Parent=Os05t0596600-02
Chr05	irgsp1_rep	three_prime_UTR	29728250	29728573	.	-	.	Parent=Os05t0596600-02
Chr05	irgsp1_rep	mRNA	29740965	29745911	.	+	.	ID=Os05t0596700-01;Name=Os05t0596700-01;Locus_id=Os05g0596700;Note=Similar to cDNA clone:J033067M13%2C full insert sequence.;Transcript_evidence=AK103507 (DDBJ%2C Best hit);ORF_evidence=B7EMM6 (UniProt);GO=Molecular Function: aminoacyl-tRNA hydrolase activity (GO:0004045);InterPro=Peptidyl-tRNA hydrolase (IPR001328);NIAS_FLcDNA=J033131E17;TENOR=Os05t0596700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	29740965	29741459	.	+	.	Parent=Os05t0596700-01
Chr05	irgsp1_rep	five_prime_UTR	29741843	29742025	.	+	.	Parent=Os05t0596700-01
Chr05	irgsp1_rep	five_prime_UTR	29742115	29742123	.	+	.	Parent=Os05t0596700-01
Chr05	irgsp1_rep	CDS	29742124	29742226	.	+	0	Parent=Os05t0596700-01
Chr05	irgsp1_rep	CDS	29742344	29742447	.	+	2	Parent=Os05t0596700-01
Chr05	irgsp1_rep	three_prime_UTR	29742448	29744007	.	+	.	Parent=Os05t0596700-01
Chr05	irgsp1_rep	three_prime_UTR	29744082	29744208	.	+	.	Parent=Os05t0596700-01
Chr05	irgsp1_rep	three_prime_UTR	29745543	29745911	.	+	.	Parent=Os05t0596700-01
Chr05	irgsp1_rep	mRNA	29749747	29750525	.	+	.	ID=Os05t0597000-01;Name=Os05t0597000-01;Locus_id=Os05g0597000;RAP-DB Gene Symbol Synonym(s)=OsMUTE;Oryzabase Gene Symbol Synonym(s)=OsbHLH055%2C bHLH055%2C bHLH55%2C OsMUTE%2C MUTE;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 055;Note=Orthologue of Arabidopsis MUTE%2C Basic helix-loop-helix (bHLH) transcription factor%2C Regulation of stomatal development%2C Control of guard mother cell fate progression;Transcript_evidence=AK357579 (barley);ORF_evidence=Q5KQG3;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Helix-loop-helix DNA-binding domain superfamily (IPR036638),Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);Manual Curation=March 5%2C 2020;Literature_PMID=32117391,30825332;Oryzabase=15346;TENOR=Os05t0597000-00;KEGG=Os05t0597000-00
Chr05	irgsp1_rep	CDS	29749747	29749842	.	+	0	Parent=Os05t0597000-01
Chr05	irgsp1_rep	CDS	29749938	29750525	.	+	0	Parent=Os05t0597000-01
Chr05	irgsp1_rep	mRNA	29753515	29756314	.	-	.	ID=Os05t0597100-01;Name=Os05t0597100-01;Locus_id=Os05g0597100;RAP-DB Gene Symbol Synonym(s)=HDT1%2C OsHDT1%2C HDT701;RAP-DB Gene Name Synonym(s)=HISTONE DEACETYLASE 1%2C histone deacetylase OsHDT1%2C histone deacetylase701%2C histone deacetylase 701;CGSNL Gene Symbol=HDT1;CGSNL Gene Name=HISTONE DEACETYLASE 1;Oryzabase Gene Symbol Synonym(s)=OsHDT1%2C HDT701;Oryzabase Gene Name Synonym(s)=histone deacetylase OsHDT1%2C histone deacetylase701%2C histone deacetylase 701;Note=Histone H4 deacetylase%2C Negative regulation of innate immunity;Transcript_evidence=AK072845;ORF_evidence=Q0DFD6;GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C C2H2-like (IPR015880),Zinc finger%2C C2H2 (IPR007087);NIAS_FLcDNA=J023142J09;Manual Curation=June 23%2C 2014;Literature_PMID=22968716;Oryzabase=9582;TENOR=Os05t0597100-01;KEGG=Os05t0597100-01
Chr05	irgsp1_rep	five_prime_UTR	29756232	29756314	.	-	.	Parent=Os05t0597100-01
Chr05	irgsp1_rep	CDS	29756219	29756231	.	-	0	Parent=Os05t0597100-01
Chr05	irgsp1_rep	CDS	29755400	29755470	.	-	2	Parent=Os05t0597100-01
Chr05	irgsp1_rep	CDS	29755081	29755299	.	-	0	Parent=Os05t0597100-01
Chr05	irgsp1_rep	CDS	29754923	29754950	.	-	0	Parent=Os05t0597100-01
Chr05	irgsp1_rep	CDS	29754808	29754852	.	-	2	Parent=Os05t0597100-01
Chr05	irgsp1_rep	CDS	29754546	29754703	.	-	2	Parent=Os05t0597100-01
Chr05	irgsp1_rep	CDS	29754398	29754466	.	-	0	Parent=Os05t0597100-01
Chr05	irgsp1_rep	CDS	29754182	29754278	.	-	0	Parent=Os05t0597100-01
Chr05	irgsp1_rep	CDS	29753963	29754095	.	-	2	Parent=Os05t0597100-01
Chr05	irgsp1_rep	CDS	29753821	29753881	.	-	1	Parent=Os05t0597100-01
Chr05	irgsp1_rep	three_prime_UTR	29753515	29753820	.	-	.	Parent=Os05t0597100-01
Chr05	irgsp1_rep	mRNA	29759285	29761362	.	-	.	ID=Os05t0597200-01;Name=Os05t0597200-01;Locus_id=Os05g0597200;Oryzabase Gene Symbol Synonym(s)=Os-AT1;Oryzabase Gene Name Synonym(s)=AT hook-containing protein 1%2C AT hook-containing DNA-binding protein 1;Note=Similar to AT1 protein.;Transcript_evidence=AK064798 (DDBJ%2C Best hit);ORF_evidence=Q40725 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: Chromatin (GO:0000785),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=High mobility group%2C HMG-I/HMG-Y (IPR000116),Histone H1/H5 (IPR005818),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),AT hook%2C DNA-binding motif (IPR017956),AT hook-like (IPR020478);NIAS_FLcDNA=J013000D04;Oryzabase=13658;Expression=AK064798;TENOR=Os05t0597200-01;KEGG=Os05t0597200-01
Chr05	irgsp1_rep	five_prime_UTR	29761362	29761362	.	-	.	Parent=Os05t0597200-01
Chr05	irgsp1_rep	CDS	29761287	29761361	.	-	0	Parent=Os05t0597200-01
Chr05	irgsp1_rep	CDS	29760728	29761157	.	-	0	Parent=Os05t0597200-01
Chr05	irgsp1_rep	CDS	29759619	29760667	.	-	2	Parent=Os05t0597200-01
Chr05	irgsp1_rep	three_prime_UTR	29759285	29759618	.	-	.	Parent=Os05t0597200-01
Chr05	irgsp1_rep	mRNA	29763178	29764641	.	+	.	ID=Os05t0597400-00;Name=Os05t0597400-00;Locus_id=Os05g0597400;Note=Conserved hypothetical protein.;Transcript_evidence=AK375939 (DDBJ);ORF_evidence=NP_001174555.1 (RefSeq);TENOR=Os05t0597400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr05	irgsp1_rep	five_prime_UTR	29763178	29763178	.	+	.	Parent=Os05t0597400-00
Chr05	irgsp1_rep	CDS	29763179	29763225	.	+	0	Parent=Os05t0597400-00
Chr05	irgsp1_rep	CDS	29763313	29763445	.	+	1	Parent=Os05t0597400-00
Chr05	irgsp1_rep	CDS	29763561	29763869	.	+	0	Parent=Os05t0597400-00
Chr05	irgsp1_rep	three_prime_UTR	29763870	29764641	.	+	.	Parent=Os05t0597400-00
Chr05	irgsp1_rep	mRNA	29785162	29785719	.	-	.	ID=Os05t0597700-01;Name=Os05t0597700-01;Locus_id=Os05g0597700;Oryzabase Gene Symbol Synonym(s)=AGP%2C OsAGP;Oryzabase Gene Name Synonym(s)=Arabinogalactan protein;Note=Conserved hypothetical protein.;Transcript_evidence=AK121194 (DDBJ%2C Best hit);ORF_evidence=A2Y879 (UniProt);NIAS_FLcDNA=J023086G21;Oryzabase=23020;Expression=AK121194;TENOR=Os05t0597700-01;KEGG=Os05t0597700-01
Chr05	irgsp1_rep	five_prime_UTR	29785660	29785719	.	-	.	Parent=Os05t0597700-01
Chr05	irgsp1_rep	CDS	29785411	29785659	.	-	0	Parent=Os05t0597700-01
Chr05	irgsp1_rep	three_prime_UTR	29785162	29785410	.	-	.	Parent=Os05t0597700-01
Chr06	irgsp1_rep	mRNA	38340	38628	.	+	.	ID=Os06t0100550-00;Name=Os06t0100550-00;Locus_id=Os06g0100550;Note=Conserved hypothetical protein.;Transcript_evidence=EU951430 (DDBJ);ORF_evidence=Q65WW4 (UniProt);Oryzabase=22530;TENOR=Os06t0100550-00
Chr06	irgsp1_rep	five_prime_UTR	38340	38517	.	+	.	Parent=Os06t0100550-00
Chr06	irgsp1_rep	CDS	38518	38622	.	+	0	Parent=Os06t0100550-00
Chr06	irgsp1_rep	three_prime_UTR	38623	38628	.	+	.	Parent=Os06t0100550-00
Chr06	irgsp1_rep	mRNA	42260	42548	.	-	.	ID=Os06t0100700-00;Name=Os06t0100700-00;Locus_id=Os06g0100700;Note=Conserved hypothetical protein.;Transcript_evidence=EU951430 (DDBJ);ORF_evidence=Q65WW4 (UniProt);TENOR=Os06t0100700-00
Chr06	irgsp1_rep	five_prime_UTR	42371	42548	.	-	.	Parent=Os06t0100700-00
Chr06	irgsp1_rep	CDS	42266	42370	.	-	0	Parent=Os06t0100700-00
Chr06	irgsp1_rep	three_prime_UTR	42260	42265	.	-	.	Parent=Os06t0100700-00
Chr06	irgsp1_rep	mRNA	131104	138259	.	+	.	ID=Os06t0101000-01;Name=Os06t0101000-01;Locus_id=Os06g0101000;Note=Zinc finger%2C PHD-type domain containing protein.;Transcript_evidence=AK122124 (DDBJ%2C Best hit);ORF_evidence=Q5VMF2 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Acyl-CoA N-acyltransferase (IPR016181),Zinc finger%2C PHD-type%2C conserved site (IPR019786),Zinc finger%2C PHD-finger (IPR019787);NIAS_FLcDNA=J033131O18;TENOR=Os06t0101000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	131104	131317	.	+	.	Parent=Os06t0101000-01
Chr06	irgsp1_rep	CDS	131318	132544	.	+	0	Parent=Os06t0101000-01
Chr06	irgsp1_rep	CDS	133193	133264	.	+	0	Parent=Os06t0101000-01
Chr06	irgsp1_rep	CDS	133335	133539	.	+	0	Parent=Os06t0101000-01
Chr06	irgsp1_rep	CDS	133615	133732	.	+	2	Parent=Os06t0101000-01
Chr06	irgsp1_rep	CDS	134040	134123	.	+	1	Parent=Os06t0101000-01
Chr06	irgsp1_rep	CDS	134228	134303	.	+	1	Parent=Os06t0101000-01
Chr06	irgsp1_rep	CDS	134389	134448	.	+	0	Parent=Os06t0101000-01
Chr06	irgsp1_rep	CDS	134536	134588	.	+	0	Parent=Os06t0101000-01
Chr06	irgsp1_rep	CDS	134671	134837	.	+	1	Parent=Os06t0101000-01
Chr06	irgsp1_rep	CDS	134963	135167	.	+	2	Parent=Os06t0101000-01
Chr06	irgsp1_rep	CDS	135989	136046	.	+	1	Parent=Os06t0101000-01
Chr06	irgsp1_rep	CDS	136225	136281	.	+	0	Parent=Os06t0101000-01
Chr06	irgsp1_rep	CDS	136363	136608	.	+	0	Parent=Os06t0101000-01
Chr06	irgsp1_rep	CDS	136938	137002	.	+	0	Parent=Os06t0101000-01
Chr06	irgsp1_rep	CDS	137090	137158	.	+	1	Parent=Os06t0101000-01
Chr06	irgsp1_rep	CDS	137238	137331	.	+	1	Parent=Os06t0101000-01
Chr06	irgsp1_rep	CDS	137467	137607	.	+	0	Parent=Os06t0101000-01
Chr06	irgsp1_rep	CDS	137683	137763	.	+	0	Parent=Os06t0101000-01
Chr06	irgsp1_rep	three_prime_UTR	137764	138259	.	+	.	Parent=Os06t0101000-01
Chr06	irgsp1_rep	mRNA	138513	139803	.	+	.	ID=Os06t0101100-01;Name=Os06t0101100-01;Locus_id=Os06g0101100;Note=Nicotinamide N-methyltransferase%2C putative domain containing protein.;Transcript_evidence=AK111058 (DDBJ%2C Best hit);ORF_evidence=NP_001142219.1 (RefSeq);InterPro=Nicotinamide N-methyltransferase%2C putative (IPR019410);NIAS_FLcDNA=002-175-D04;Expression=AK111058;TENOR=Os06t0101100-01;KEGG=Os06t0101100-01
Chr06	irgsp1_rep	five_prime_UTR	138513	138563	.	+	.	Parent=Os06t0101100-01
Chr06	irgsp1_rep	CDS	138564	139110	.	+	0	Parent=Os06t0101100-01
Chr06	irgsp1_rep	CDS	139222	139335	.	+	2	Parent=Os06t0101100-01
Chr06	irgsp1_rep	CDS	139406	139560	.	+	2	Parent=Os06t0101100-01
Chr06	irgsp1_rep	three_prime_UTR	139561	139803	.	+	.	Parent=Os06t0101100-01
Chr06	irgsp1_rep	mRNA	142315	146642	.	+	.	ID=Os06t0101300-01;Name=Os06t0101300-01;Locus_id=Os06g0101300;Oryzabase Gene Symbol Synonym(s)=OsRFPH2-21;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPH2-21%2C RING-H2 protein 21;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK109515 (DDBJ%2C Best hit),AK121897 (DDBJ%2C Best hit);ORF_evidence=XP_002437660.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=002-107-D06,J033105E24;Oryzabase=11782;TENOR=Os06t0101300-01
Chr06	irgsp1_rep	five_prime_UTR	142315	142404	.	+	.	Parent=Os06t0101300-01
Chr06	irgsp1_rep	CDS	142405	143421	.	+	0	Parent=Os06t0101300-01
Chr06	irgsp1_rep	three_prime_UTR	143422	143450	.	+	.	Parent=Os06t0101300-01
Chr06	irgsp1_rep	three_prime_UTR	146306	146642	.	+	.	Parent=Os06t0101300-01
Chr06	irgsp1_rep	mRNA	149486	150187	.	-	.	ID=Os06t0101600-01;Name=Os06t0101600-01;Locus_id=Os06g0101600;CGSNL Gene Symbol=PC;CGSNL Gene Name=PLASTOCYANIN;Oryzabase Gene Symbol Synonym(s)=OsPC%2C PetE%2C OsPETE;Oryzabase Gene Name Synonym(s)=plastocyanin;Note=Plastocyanin%2C chloroplast precursor.;Transcript_evidence=AK070447 (DDBJ%2C Best hit);ORF_evidence=Q0DFC9 (UniProt);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Blue (type 1) copper domain (IPR000923),Blue (type 1) copper protein (IPR001235),Plastocyanin (IPR002387),Cupredoxin (IPR008972);NIAS_FLcDNA=J023049C22;Oryzabase=22100;Expression=AK070447;TENOR=Os06t0101600-01;KEGG=Os06t0101600-01
Chr06	irgsp1_rep	five_prime_UTR	150123	150187	.	-	.	Parent=Os06t0101600-01
Chr06	irgsp1_rep	CDS	149658	150122	.	-	0	Parent=Os06t0101600-01
Chr06	irgsp1_rep	three_prime_UTR	149486	149657	.	-	.	Parent=Os06t0101600-01
Chr06	irgsp1_rep	mRNA	153418	156618	.	-	.	ID=Os06t0101800-01;Name=Os06t0101800-01;Locus_id=Os06g0101800;CGSNL Gene Symbol=NAC19;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 19;Oryzabase Gene Symbol Synonym(s)=ONAC019%2C ONAC19;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 019%2C NAC domain-containing protein 19;Note=Similar to NAC-domain protein 1-1.;Transcript_evidence=AK064178 (DDBJ%2C Best hit);ORF_evidence=B9FR17 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=002-104-B01;Oryzabase=11468;Expression=AK064178;TENOR=Os06t0101800-01;KEGG=Os06t0101800-01
Chr06	irgsp1_rep	five_prime_UTR	156557	156618	.	-	.	Parent=Os06t0101800-01
Chr06	irgsp1_rep	CDS	156083	156556	.	-	0	Parent=Os06t0101800-01
Chr06	irgsp1_rep	CDS	155740	155991	.	-	0	Parent=Os06t0101800-01
Chr06	irgsp1_rep	CDS	155285	155638	.	-	0	Parent=Os06t0101800-01
Chr06	irgsp1_rep	three_prime_UTR	154603	155284	.	-	.	Parent=Os06t0101800-01
Chr06	irgsp1_rep	three_prime_UTR	154432	154531	.	-	.	Parent=Os06t0101800-01
Chr06	irgsp1_rep	three_prime_UTR	153418	153774	.	-	.	Parent=Os06t0101800-01
Chr06	irgsp1_rep	mRNA	163259	165320	.	+	.	ID=Os06t0102100-01;Name=Os06t0102100-01;Locus_id=Os06g0102100;RAP-DB Gene Symbol Synonym(s)=CYP93G2%2C CYP93G2%2C OsF2H;RAP-DB Gene Name Synonym(s)=P-450 93G2%2C CytoChrome P450 93G2%2C flavanone 2-hydroxylase;CGSNL Gene Symbol=CYP93G2;CGSNL Gene Name=P-450 93G2;Oryzabase Gene Symbol Synonym(s)=OsCYP93G2%2C OsF2H%2C F2H;Oryzabase Gene Name Synonym(s)=CytoChrome P450 93G2%2C flavanone 2-hydroxylase;Note=CytoChrome P450 93G2 protein (CYP93G2)%2C flavanone 2-hydroxylase (F2H)%2C C-glycosylflavone biosynthesis;Transcript_evidence=AK099468 (Genbank),AK105993 (Genbank);ORF_evidence=Q5VRI5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J013023N04,001-205-H03;Manual Curation=October 18%2C 2010;Literature_PMID=20647377;Oryzabase=15057;TENOR=Os06t0102100-01
Chr06	irgsp1_rep	five_prime_UTR	163259	163300	.	+	.	Parent=Os06t0102100-01
Chr06	irgsp1_rep	CDS	163301	164218	.	+	0	Parent=Os06t0102100-01
Chr06	irgsp1_rep	CDS	164349	164987	.	+	0	Parent=Os06t0102100-01
Chr06	irgsp1_rep	three_prime_UTR	164988	165320	.	+	.	Parent=Os06t0102100-01
Chr06	irgsp1_rep	mRNA	164238	165038	.	-	.	ID=Os06t0102200-00;Name=Os06t0102200-00;Locus_id=Os06g0102200;Note=Similar to H0102C09.4 protein.;Transcript_evidence=EU942896 (DDBJ);ORF_evidence=Q25AL2 (UniProt);TENOR=Os06t0102200-00
Chr06	irgsp1_rep	CDS	164238	165038	.	-	0	Parent=Os06t0102200-00
Chr06	irgsp1_rep	mRNA	167367	174319	.	+	.	ID=Os06t0102300-01;Name=Os06t0102300-01;Locus_id=Os06g0102300;Oryzabase Gene Symbol Synonym(s)=OsPCS%2C PCS%2C OsPCS2%2C PCS2%2C OsPCS2a%2C PCS2a%2C OsPCS2b%2C PCS2b%2C OsPCS1%2C PCS1%2C OsPCS1a%2C OsPCS1b%2C OsPCS1c%2C OsPCS1full%2C OsPCS5%2C PCS5;Oryzabase Gene Name Synonym(s)=Phytochelatin Synthase%2C phytochelatin synthase 2;Note=Similar to Phytochelatin synthase.;Transcript_evidence=AK071754 (DDBJ%2C Best hit);ORF_evidence=Q9SWW5 (UniProt);GO=Biological Process: response to metal ion (GO:0010038),Biological Process: phytochelatin biosynthetic process (GO:0046938),Molecular Function: glutathione gamma-glutamylcysteinyltransferase activity (GO:0016756),Molecular Function: metal ion binding (GO:0046872);InterPro=Phytochelatin synthase (IPR007719);NIAS_FLcDNA=J023112B16;Oryzabase=21100;Expression=AK071754;TENOR=Os06t0102300-01;KEGG=Os06t0102300-01
Chr06	irgsp1_rep	five_prime_UTR	167367	167513	.	+	.	Parent=Os06t0102300-01
Chr06	irgsp1_rep	CDS	167514	167987	.	+	0	Parent=Os06t0102300-01
Chr06	irgsp1_rep	CDS	168065	168228	.	+	0	Parent=Os06t0102300-01
Chr06	irgsp1_rep	CDS	172105	172156	.	+	1	Parent=Os06t0102300-01
Chr06	irgsp1_rep	CDS	172232	172324	.	+	0	Parent=Os06t0102300-01
Chr06	irgsp1_rep	three_prime_UTR	172325	172470	.	+	.	Parent=Os06t0102300-01
Chr06	irgsp1_rep	three_prime_UTR	172564	173070	.	+	.	Parent=Os06t0102300-01
Chr06	irgsp1_rep	three_prime_UTR	173897	174319	.	+	.	Parent=Os06t0102300-01
Chr06	irgsp1_rep	mRNA	168016	174230	.	+	.	ID=Os06t0102300-02;Name=Os06t0102300-02;Locus_id=Os06g0102300;Oryzabase Gene Symbol Synonym(s)=OsPCS%2C PCS%2C OsPCS2%2C PCS2%2C OsPCS2a%2C PCS2a%2C OsPCS2b%2C PCS2b%2C OsPCS1%2C PCS1%2C OsPCS1a%2C OsPCS1b%2C OsPCS1c%2C OsPCS1full%2C OsPCS5%2C PCS5;Oryzabase Gene Name Synonym(s)=Phytochelatin Synthase%2C phytochelatin synthase 2;Note=Similar to Glutathione gamma-glutamylcysteinyltransferase 1.;Transcript_evidence=AK071958 (DDBJ%2C Best hit);ORF_evidence=Q9SWW5 (UniProt);GO=Biological Process: response to metal ion (GO:0010038),Biological Process: phytochelatin biosynthetic process (GO:0046938),Molecular Function: glutathione gamma-glutamylcysteinyltransferase activity (GO:0016756),Molecular Function: metal ion binding (GO:0046872);InterPro=Phytochelatin synthase (IPR007719),Phytochelatin synthase%2C C-terminal (IPR015407);NIAS_FLcDNA=J013081H24;Manual Curation=March 22%2C 2017;Oryzabase=21100;TENOR=Os06t0102300-02
Chr06	irgsp1_rep	five_prime_UTR	168016	168115	.	+	.	Parent=Os06t0102300-02
Chr06	irgsp1_rep	CDS	168116	168228	.	+	0	Parent=Os06t0102300-02
Chr06	irgsp1_rep	CDS	172105	172156	.	+	1	Parent=Os06t0102300-02
Chr06	irgsp1_rep	CDS	172243	172470	.	+	0	Parent=Os06t0102300-02
Chr06	irgsp1_rep	CDS	172564	173070	.	+	0	Parent=Os06t0102300-02
Chr06	irgsp1_rep	CDS	173897	173980	.	+	0	Parent=Os06t0102300-02
Chr06	irgsp1_rep	three_prime_UTR	173981	174230	.	+	.	Parent=Os06t0102300-02
Chr06	irgsp1_rep	mRNA	167514	173980	.	+	.	ID=Os06t0102300-03;Name=Os06t0102300-03;Locus_id=Os06g0102300;RAP-DB Gene Symbol Synonym(s)=OsPCS2a;RAP-DB Gene Name Synonym(s)=Phytochelatin Synthase 2a;Oryzabase Gene Symbol Synonym(s)=OsPCS%2C PCS%2C OsPCS2%2C PCS2%2C OsPCS2a%2C PCS2a%2C OsPCS2b%2C PCS2b%2C OsPCS1%2C PCS1%2C OsPCS1a%2C OsPCS1b%2C OsPCS1c%2C OsPCS1full%2C OsPCS5%2C PCS5;Oryzabase Gene Name Synonym(s)=Phytochelatin Synthase%2C phytochelatin synthase 2;Note=Phytochelatin synthase 2%2C Cadmium (Cd) and arsenic (As) tolerance;Transcript_evidence=KU670827 (IR64%2C indica);ORF_evidence=A0A1B2LVE0 (indica);GO=Biological Process: response to metal ion (GO:0010038),Biological Process: phytochelatin biosynthetic process (GO:0046938),Molecular Function: glutathione gamma-glutamylcysteinyltransferase activity (GO:0016756),Molecular Function: metal ion binding (GO:0046872);InterPro=Phytochelatin synthase (IPR007719),Phytochelatin synthase%2C C-terminal (IPR015407);Manual Curation=March 22%2C 2017;Literature_PMID=28283922;Oryzabase=21100
Chr06	irgsp1_rep	CDS	167514	167987	.	+	0	Parent=Os06t0102300-03
Chr06	irgsp1_rep	CDS	168065	168228	.	+	0	Parent=Os06t0102300-03
Chr06	irgsp1_rep	CDS	172105	172156	.	+	1	Parent=Os06t0102300-03
Chr06	irgsp1_rep	CDS	172243	172470	.	+	0	Parent=Os06t0102300-03
Chr06	irgsp1_rep	CDS	172564	173070	.	+	0	Parent=Os06t0102300-03
Chr06	irgsp1_rep	CDS	173897	173980	.	+	0	Parent=Os06t0102300-03
Chr06	irgsp1_rep	mRNA	167514	168194	.	+	.	ID=Os06t0102300-04;Name=Os06t0102300-04;Locus_id=Os06g0102300;RAP-DB Gene Symbol Synonym(s)=OsPCS2b;RAP-DB Gene Name Synonym(s)=Phytochelatin Synthase 2b;Oryzabase Gene Symbol Synonym(s)=OsPCS%2C PCS%2C OsPCS2%2C PCS2%2C OsPCS2a%2C PCS2a%2C OsPCS2b%2C PCS2b%2C OsPCS1%2C PCS1%2C OsPCS1a%2C OsPCS1b%2C OsPCS1c%2C OsPCS1full%2C OsPCS5%2C PCS5;Oryzabase Gene Name Synonym(s)=Phytochelatin Synthase%2C phytochelatin synthase 2;Note=Splicing variant of phytochelatin synthase 2;Transcript_evidence=KU670828 (IR64%2C indica);ORF_evidence=A0A1B2LVE3 (indica);GO=Biological Process: response to metal ion (GO:0010038),Biological Process: phytochelatin biosynthetic process (GO:0046938),Molecular Function: glutathione gamma-glutamylcysteinyltransferase activity (GO:0016756),Molecular Function: metal ion binding (GO:0046872);InterPro=Phytochelatin synthase (IPR007719);Manual Curation=March 22%2C 2017;Literature_PMID=28283922;Oryzabase=21100
Chr06	irgsp1_rep	CDS	167514	168194	.	+	0	Parent=Os06t0102300-04
Chr06	irgsp1_rep	mRNA	182104	184623	.	+	.	ID=Os06t0102600-01;Name=Os06t0102600-01;Locus_id=Os06g0102600;Note=Similar to HCF106 precursor protein.;Transcript_evidence=AK241628 (DDBJ%2C Best hit);ORF_evidence=NP_001105878.1 (RefSeq);NIAS_FLcDNA=J065187I04;TENOR=Os06t0102600-01;KEGG=Os06t0102600-01
Chr06	irgsp1_rep	five_prime_UTR	182104	182105	.	+	.	Parent=Os06t0102600-01
Chr06	irgsp1_rep	CDS	182106	182328	.	+	0	Parent=Os06t0102600-01
Chr06	irgsp1_rep	CDS	183073	183195	.	+	2	Parent=Os06t0102600-01
Chr06	irgsp1_rep	CDS	183664	183792	.	+	2	Parent=Os06t0102600-01
Chr06	irgsp1_rep	CDS	184203	184321	.	+	2	Parent=Os06t0102600-01
Chr06	irgsp1_rep	three_prime_UTR	184322	184623	.	+	.	Parent=Os06t0102600-01
Chr06	irgsp1_rep	mRNA	185697	188136	.	+	.	ID=Os06t0102700-01;Name=Os06t0102700-01;Locus_id=Os06g0102700;Oryzabase Gene Symbol Synonym(s)=OsPUB12;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 12%2C U-box protein 12;Note=Similar to predicted protein.;Transcript_evidence=AK071080 (DDBJ%2C Best hit);ORF_evidence=Q5VRH9-2 (UniProt);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),U box domain (IPR003613),Armadillo-like helical (IPR011989),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023078K06;Oryzabase=17804;Expression=AK071080;TENOR=Os06t0102700-01;KEGG=Os06t0102700-01
Chr06	irgsp1_rep	five_prime_UTR	185697	185803	.	+	.	Parent=Os06t0102700-01
Chr06	irgsp1_rep	CDS	185804	186025	.	+	0	Parent=Os06t0102700-01
Chr06	irgsp1_rep	CDS	186121	186237	.	+	0	Parent=Os06t0102700-01
Chr06	irgsp1_rep	CDS	186324	186737	.	+	0	Parent=Os06t0102700-01
Chr06	irgsp1_rep	CDS	186827	187888	.	+	0	Parent=Os06t0102700-01
Chr06	irgsp1_rep	three_prime_UTR	187889	188136	.	+	.	Parent=Os06t0102700-01
Chr06	irgsp1_rep	mRNA	185819	188131	.	-	.	ID=Os06t0102725-00;Name=Os06t0102725-00;Locus_id=Os06g0102725;Note=Hypothetical protein.;Transcript_evidence=tplb0057f21 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0102725-00
Chr06	irgsp1_rep	five_prime_UTR	186908	188131	.	-	.	Parent=Os06t0102725-00
Chr06	irgsp1_rep	CDS	186824	186907	.	-	0	Parent=Os06t0102725-00
Chr06	irgsp1_rep	CDS	186321	186734	.	-	0	Parent=Os06t0102725-00
Chr06	irgsp1_rep	CDS	186148	186234	.	-	0	Parent=Os06t0102725-00
Chr06	irgsp1_rep	CDS	186034	186054	.	-	0	Parent=Os06t0102725-00
Chr06	irgsp1_rep	three_prime_UTR	185819	186033	.	-	.	Parent=Os06t0102725-00
Chr06	irgsp1_rep	mRNA	190346	191129	.	+	.	ID=Os06t0102750-00;Name=Os06t0102750-00;Locus_id=Os06g0102750;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A2Y894 (UniProt);TENOR=Os06t0102750-00;KEGG=Os06t0102750-00
Chr06	irgsp1_rep	CDS	190346	190561	.	+	0	Parent=Os06t0102750-00
Chr06	irgsp1_rep	CDS	190614	190909	.	+	0	Parent=Os06t0102750-00
Chr06	irgsp1_rep	CDS	191024	191129	.	+	1	Parent=Os06t0102750-00
Chr06	irgsp1_rep	mRNA	195018	204322	.	+	.	ID=Os06t0102800-01;Name=Os06t0102800-01;Locus_id=Os06g0102800;Oryzabase Gene Symbol Synonym(s)=CHR723%2C OsCHR723;Oryzabase Gene Name Synonym(s)=CHD-related gene 723;Note=SNF2-related domain containing protein.;Transcript_evidence=AK068790 (DDBJ%2C Best hit);ORF_evidence=B8B194 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: zinc ion binding (GO:0008270);InterPro=SNF2-related (IPR000330),Chromo domain/shadow (IPR000953),Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Chromo domain-like (IPR016197),Zinc finger%2C PHD-finger (IPR019787),Chromo domain (IPR023780);NIAS_FLcDNA=J013163J20;Oryzabase=10884;TENOR=Os06t0102800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	195018	195201	.	+	.	Parent=Os06t0102800-01
Chr06	irgsp1_rep	five_prime_UTR	195273	195294	.	+	.	Parent=Os06t0102800-01
Chr06	irgsp1_rep	CDS	195295	195640	.	+	0	Parent=Os06t0102800-01
Chr06	irgsp1_rep	CDS	195718	195917	.	+	2	Parent=Os06t0102800-01
Chr06	irgsp1_rep	CDS	196374	196465	.	+	0	Parent=Os06t0102800-01
Chr06	irgsp1_rep	CDS	196559	196616	.	+	1	Parent=Os06t0102800-01
Chr06	irgsp1_rep	CDS	196737	196885	.	+	0	Parent=Os06t0102800-01
Chr06	irgsp1_rep	CDS	197608	197780	.	+	1	Parent=Os06t0102800-01
Chr06	irgsp1_rep	CDS	197870	198015	.	+	2	Parent=Os06t0102800-01
Chr06	irgsp1_rep	CDS	198112	198399	.	+	0	Parent=Os06t0102800-01
Chr06	irgsp1_rep	CDS	199683	199823	.	+	0	Parent=Os06t0102800-01
Chr06	irgsp1_rep	CDS	200068	200319	.	+	0	Parent=Os06t0102800-01
Chr06	irgsp1_rep	CDS	200463	200603	.	+	0	Parent=Os06t0102800-01
Chr06	irgsp1_rep	CDS	200686	201003	.	+	0	Parent=Os06t0102800-01
Chr06	irgsp1_rep	CDS	201146	201316	.	+	0	Parent=Os06t0102800-01
Chr06	irgsp1_rep	CDS	202022	203006	.	+	0	Parent=Os06t0102800-01
Chr06	irgsp1_rep	CDS	203091	203179	.	+	2	Parent=Os06t0102800-01
Chr06	irgsp1_rep	CDS	203968	204072	.	+	0	Parent=Os06t0102800-01
Chr06	irgsp1_rep	CDS	204155	204322	.	+	0	Parent=Os06t0102800-01
Chr06	irgsp1_rep	mRNA	204487	208534	.	+	.	ID=Os06t0102900-01;Name=Os06t0102900-01;Locus_id=Os06g0102900;Oryzabase Gene Symbol Synonym(s)=CHR723%2C OsCHR723;Oryzabase Gene Name Synonym(s)=CHD-related gene 723;Note=Conserved hypothetical protein.;Transcript_evidence=AK106399 (DDBJ%2C Best hit);ORF_evidence=Q5VRH7 (UniProt);NIAS_FLcDNA=002-102-G02;Oryzabase=10884;Expression=AK106399;TENOR=Os06t0102900-01;KEGG=Os06t0102900-01
Chr06	irgsp1_rep	five_prime_UTR	204487	204487	.	+	.	Parent=Os06t0102900-01
Chr06	irgsp1_rep	CDS	204488	205306	.	+	0	Parent=Os06t0102900-01
Chr06	irgsp1_rep	CDS	205844	206359	.	+	0	Parent=Os06t0102900-01
Chr06	irgsp1_rep	CDS	206455	206650	.	+	0	Parent=Os06t0102900-01
Chr06	irgsp1_rep	CDS	207299	207843	.	+	2	Parent=Os06t0102900-01
Chr06	irgsp1_rep	CDS	208100	208141	.	+	0	Parent=Os06t0102900-01
Chr06	irgsp1_rep	three_prime_UTR	208142	208534	.	+	.	Parent=Os06t0102900-01
Chr06	irgsp1_rep	mRNA	212913	214438	.	-	.	ID=Os06t0103100-01;Name=Os06t0103100-01;Locus_id=Os06g0103100;Note=Hypothetical protein.;Transcript_evidence=AK110874 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-172-F10;Expression=AK110874;TENOR=Os06t0103100-01;KEGG=Os06t0103100-01
Chr06	irgsp1_rep	five_prime_UTR	214011	214438	.	-	.	Parent=Os06t0103100-01
Chr06	irgsp1_rep	CDS	213546	214010	.	-	0	Parent=Os06t0103100-01
Chr06	irgsp1_rep	three_prime_UTR	212913	213545	.	-	.	Parent=Os06t0103100-01
Chr06	irgsp1_rep	mRNA	213020	214695	.	+	.	ID=Os06t0103200-01;Name=Os06t0103200-01;Locus_id=Os06g0103200;Note=Transferase family protein.;Transcript_evidence=AK103757 (DDBJ%2C Best hit);ORF_evidence=B8B196 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J033143E17;Expression=AK103757;TENOR=Os06t0103200-01;KEGG=Os06t0103200-01
Chr06	irgsp1_rep	five_prime_UTR	213020	213054	.	+	.	Parent=Os06t0103200-01
Chr06	irgsp1_rep	CDS	213055	214440	.	+	0	Parent=Os06t0103200-01
Chr06	irgsp1_rep	three_prime_UTR	214441	214695	.	+	.	Parent=Os06t0103200-01
Chr06	irgsp1_rep	mRNA	215144	218016	.	-	.	ID=Os06t0103300-01;Name=Os06t0103300-01;Locus_id=Os06g0103300;Note=Similar to Homogentisate 1%2C2-dioxygenase (EC 1.13.11.5) (Homogentisicase) (Homogentisate oxygenase) (Homogentisic acid oxidase).;Transcript_evidence=AK065189 (DDBJ%2C Best hit);ORF_evidence=Q5VRH4 (UniProt);GO=Biological Process: L-phenylalanine catabolic process (GO:0006559),Biological Process: tyrosine metabolic process (GO:0006570),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: homogentisate 1%2C2-dioxygenase activity (GO:0004411);InterPro=Homogentisate 1%2C2-dioxygenase (IPR005708),Cupin%2C RmlC-type (IPR011051);NIAS_FLcDNA=J013002E07;Expression=AK065189;TENOR=Os06t0103300-01;KEGG=Os06t0103300-01 (EC:1.13.11.5)
Chr06	irgsp1_rep	five_prime_UTR	217939	218016	.	-	.	Parent=Os06t0103300-01
Chr06	irgsp1_rep	CDS	217715	217938	.	-	0	Parent=Os06t0103300-01
Chr06	irgsp1_rep	CDS	217404	217646	.	-	1	Parent=Os06t0103300-01
Chr06	irgsp1_rep	CDS	217225	217304	.	-	1	Parent=Os06t0103300-01
Chr06	irgsp1_rep	CDS	216631	216798	.	-	2	Parent=Os06t0103300-01
Chr06	irgsp1_rep	CDS	216334	216509	.	-	2	Parent=Os06t0103300-01
Chr06	irgsp1_rep	CDS	216165	216234	.	-	0	Parent=Os06t0103300-01
Chr06	irgsp1_rep	CDS	215887	216041	.	-	2	Parent=Os06t0103300-01
Chr06	irgsp1_rep	CDS	215707	215790	.	-	0	Parent=Os06t0103300-01
Chr06	irgsp1_rep	CDS	215401	215613	.	-	0	Parent=Os06t0103300-01
Chr06	irgsp1_rep	three_prime_UTR	215144	215400	.	-	.	Parent=Os06t0103300-01
Chr06	irgsp1_rep	mRNA	215144	217444	.	-	.	ID=Os06t0103300-02;Name=Os06t0103300-02;Locus_id=Os06g0103300;Note=Similar to Homogentisate 1%2C2-dioxygenase.;Transcript_evidence=AK062144 (DDBJ%2C Best hit);ORF_evidence=Q5VRH4 (UniProt);GO=Biological Process: L-phenylalanine catabolic process (GO:0006559),Biological Process: tyrosine metabolic process (GO:0006570),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: homogentisate 1%2C2-dioxygenase activity (GO:0004411);InterPro=Homogentisate 1%2C2-dioxygenase (IPR005708),Cupin%2C RmlC-type (IPR011051);NIAS_FLcDNA=001-045-G08;Expression=AK062144;TENOR=Os06t0103300-02;KEGG=Os06t0103300-02 (EC:1.13.11.5)
Chr06	irgsp1_rep	CDS	217404	217444	.	-	0	Parent=Os06t0103300-02
Chr06	irgsp1_rep	CDS	217225	217304	.	-	1	Parent=Os06t0103300-02
Chr06	irgsp1_rep	CDS	216631	216798	.	-	2	Parent=Os06t0103300-02
Chr06	irgsp1_rep	CDS	216334	216509	.	-	2	Parent=Os06t0103300-02
Chr06	irgsp1_rep	CDS	216165	216234	.	-	0	Parent=Os06t0103300-02
Chr06	irgsp1_rep	CDS	215887	216041	.	-	2	Parent=Os06t0103300-02
Chr06	irgsp1_rep	CDS	215707	215790	.	-	0	Parent=Os06t0103300-02
Chr06	irgsp1_rep	CDS	215401	215613	.	-	0	Parent=Os06t0103300-02
Chr06	irgsp1_rep	three_prime_UTR	215144	215400	.	-	.	Parent=Os06t0103300-02
Chr06	irgsp1_rep	mRNA	219529	221117	.	-	.	ID=Os06t0103400-01;Name=Os06t0103400-01;Locus_id=Os06g0103400;Note=Nucleic acid-binding%2C OB-fold domain containing protein.;Transcript_evidence=AK067021 (DDBJ%2C Best hit);ORF_evidence=NP_001149564.1 (RefSeq);InterPro=Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=J013090L10;Expression=AK067021;TENOR=Os06t0103400-01;KEGG=Os06t0103400-01
Chr06	irgsp1_rep	five_prime_UTR	220883	221117	.	-	.	Parent=Os06t0103400-01
Chr06	irgsp1_rep	CDS	220868	220882	.	-	0	Parent=Os06t0103400-01
Chr06	irgsp1_rep	CDS	220707	220833	.	-	0	Parent=Os06t0103400-01
Chr06	irgsp1_rep	CDS	219860	220053	.	-	2	Parent=Os06t0103400-01
Chr06	irgsp1_rep	three_prime_UTR	219529	219859	.	-	.	Parent=Os06t0103400-01
Chr06	irgsp1_rep	mRNA	219460	221117	.	-	.	ID=Os06t0103400-02;Name=Os06t0103400-02;Locus_id=Os06g0103400;Note=Similar to OB-fold nucleic acid binding domain containing protein.;Transcript_evidence=AK071627 (DDBJ%2C Best hit);ORF_evidence=NP_001149564.1 (RefSeq);InterPro=Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=J023107F06;Expression=AK071627;TENOR=Os06t0103400-02;KEGG=Os06t0103400-02
Chr06	irgsp1_rep	five_prime_UTR	221011	221117	.	-	.	Parent=Os06t0103400-02
Chr06	irgsp1_rep	CDS	220707	221010	.	-	0	Parent=Os06t0103400-02
Chr06	irgsp1_rep	CDS	219860	220053	.	-	2	Parent=Os06t0103400-02
Chr06	irgsp1_rep	three_prime_UTR	219460	219859	.	-	.	Parent=Os06t0103400-02
Chr06	irgsp1_rep	mRNA	227847	232614	.	+	.	ID=Os06t0103500-01;Name=Os06t0103500-01;Locus_id=Os06g0103500;Oryzabase Gene Symbol Synonym(s)=ACX1%2C OsACX1;Oryzabase Gene Name Synonym(s)=acyl-CoA oxidase 1;Note=Similar to Acyl-coenzyme A oxidase 1%2C peroxisomal (EC 1.3.3.6) (AOX 1) (Long- chain acyl-CoA oxidase) (AtCX1).;Transcript_evidence=AK060849 (DDBJ%2C Best hit),AK100758 (DDBJ%2C Best hit);ORF_evidence=E9L0E1 (UniProt);GO=Biological Process: fatty acid metabolic process (GO:0006631),Biological Process: fatty acid beta-oxidation (GO:0006635),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: peroxisome (GO:0005777),Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995),Molecular Function: acyl-CoA oxidase activity (GO:0003997),Molecular Function: oxidoreductase activity%2C acting on the CH-CH group of donors (GO:0016627),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Acyl-CoA oxidase%2C C-terminal (IPR002655),Acyl-CoA oxidase/dehydrogenase%2C central domain (IPR006091),Acyl-CoA dehydrogenase/oxidase C-terminal (IPR009075),Acyl-CoA dehydrogenase/oxidase (IPR009100),Acyl-CoA oxidase (IPR012258),Acyl-CoA dehydrogenase/oxidase%2C N-terminal (IPR013786),Acyl-CoA oxidase%2C peroxisomal (IPR023570);NIAS_FLcDNA=001-034-E06,J023119B01;Oryzabase=22011;Expression=AK060849;TENOR=Os06t0103500-01;KEGG=Os06t0103500-01 (EC:1.3.3.6)
Chr06	irgsp1_rep	five_prime_UTR	227847	228013	.	+	.	Parent=Os06t0103500-01
Chr06	irgsp1_rep	CDS	228014	228166	.	+	0	Parent=Os06t0103500-01
Chr06	irgsp1_rep	CDS	228893	229001	.	+	0	Parent=Os06t0103500-01
Chr06	irgsp1_rep	CDS	229096	229157	.	+	2	Parent=Os06t0103500-01
Chr06	irgsp1_rep	CDS	229284	229493	.	+	0	Parent=Os06t0103500-01
Chr06	irgsp1_rep	CDS	229609	229696	.	+	0	Parent=Os06t0103500-01
Chr06	irgsp1_rep	CDS	229774	229936	.	+	2	Parent=Os06t0103500-01
Chr06	irgsp1_rep	CDS	230037	230235	.	+	1	Parent=Os06t0103500-01
Chr06	irgsp1_rep	CDS	230456	230653	.	+	0	Parent=Os06t0103500-01
Chr06	irgsp1_rep	CDS	230887	231018	.	+	0	Parent=Os06t0103500-01
Chr06	irgsp1_rep	CDS	231182	231302	.	+	0	Parent=Os06t0103500-01
Chr06	irgsp1_rep	CDS	231453	231563	.	+	2	Parent=Os06t0103500-01
Chr06	irgsp1_rep	CDS	231710	231779	.	+	2	Parent=Os06t0103500-01
Chr06	irgsp1_rep	CDS	231880	232063	.	+	1	Parent=Os06t0103500-01
Chr06	irgsp1_rep	CDS	232137	232346	.	+	0	Parent=Os06t0103500-01
Chr06	irgsp1_rep	three_prime_UTR	232347	232614	.	+	.	Parent=Os06t0103500-01
Chr06	irgsp1_rep	mRNA	227908	232614	.	+	.	ID=Os06t0103500-02;Name=Os06t0103500-02;Locus_id=Os06g0103500;Oryzabase Gene Symbol Synonym(s)=ACX1%2C OsACX1;Oryzabase Gene Name Synonym(s)=acyl-CoA oxidase 1;Note=Similar to Acyl-coenzyme A oxidase 1%2C peroxisomal (EC 1.3.3.6) (AOX 1) (Long- chain acyl-CoA oxidase) (AtCX1).;Transcript_evidence=AK098983 (DDBJ%2C Best hit);ORF_evidence=E9L0E1 (UniProt);GO=Biological Process: fatty acid metabolic process (GO:0006631),Biological Process: fatty acid beta-oxidation (GO:0006635),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: peroxisome (GO:0005777),Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995),Molecular Function: acyl-CoA oxidase activity (GO:0003997),Molecular Function: oxidoreductase activity%2C acting on the CH-CH group of donors (GO:0016627),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Acyl-CoA oxidase%2C C-terminal (IPR002655),Acyl-CoA oxidase/dehydrogenase%2C central domain (IPR006091),Acyl-CoA dehydrogenase/oxidase C-terminal (IPR009075),Acyl-CoA dehydrogenase/oxidase (IPR009100),Acyl-CoA oxidase (IPR012258),Acyl-CoA dehydrogenase/oxidase%2C N-terminal (IPR013786),Acyl-CoA oxidase%2C peroxisomal (IPR023570);NIAS_FLcDNA=J013091M04;Oryzabase=22011;Expression=AK098983;TENOR=Os06t0103500-02;KEGG=Os06t0103500-02 (EC:1.3.3.6)
Chr06	irgsp1_rep	five_prime_UTR	227908	228013	.	+	.	Parent=Os06t0103500-02
Chr06	irgsp1_rep	CDS	228014	228166	.	+	0	Parent=Os06t0103500-02
Chr06	irgsp1_rep	CDS	228893	229001	.	+	0	Parent=Os06t0103500-02
Chr06	irgsp1_rep	CDS	229096	229157	.	+	2	Parent=Os06t0103500-02
Chr06	irgsp1_rep	CDS	229284	229493	.	+	0	Parent=Os06t0103500-02
Chr06	irgsp1_rep	CDS	229609	229696	.	+	0	Parent=Os06t0103500-02
Chr06	irgsp1_rep	CDS	229774	229936	.	+	2	Parent=Os06t0103500-02
Chr06	irgsp1_rep	CDS	230037	230235	.	+	1	Parent=Os06t0103500-02
Chr06	irgsp1_rep	CDS	230456	230653	.	+	0	Parent=Os06t0103500-02
Chr06	irgsp1_rep	CDS	230887	231018	.	+	0	Parent=Os06t0103500-02
Chr06	irgsp1_rep	CDS	231182	231302	.	+	0	Parent=Os06t0103500-02
Chr06	irgsp1_rep	CDS	231453	231563	.	+	2	Parent=Os06t0103500-02
Chr06	irgsp1_rep	CDS	231710	231779	.	+	2	Parent=Os06t0103500-02
Chr06	irgsp1_rep	CDS	231880	232063	.	+	1	Parent=Os06t0103500-02
Chr06	irgsp1_rep	CDS	232137	232346	.	+	0	Parent=Os06t0103500-02
Chr06	irgsp1_rep	three_prime_UTR	232347	232614	.	+	.	Parent=Os06t0103500-02
Chr06	irgsp1_rep	mRNA	227911	228353	.	+	.	ID=Os06t0103500-03;Name=Os06t0103500-03;Locus_id=Os06g0103500;Oryzabase Gene Symbol Synonym(s)=ACX1%2C OsACX1;Oryzabase Gene Name Synonym(s)=acyl-CoA oxidase 1;Note=Similar to Acyl-CoA dehydrogenase (Fragment).;Transcript_evidence=AK063051 (DDBJ%2C Best hit);ORF_evidence=C1K4P6 (UniProt);NIAS_FLcDNA=001-110-E05;Oryzabase=22011;Expression=AK063051;TENOR=Os06t0103500-03;KEGG=Os06t0103500-03 (EC:1.3.3.6)
Chr06	irgsp1_rep	five_prime_UTR	227911	228013	.	+	.	Parent=Os06t0103500-03
Chr06	irgsp1_rep	CDS	228014	228220	.	+	0	Parent=Os06t0103500-03
Chr06	irgsp1_rep	three_prime_UTR	228221	228353	.	+	.	Parent=Os06t0103500-03
Chr06	irgsp1_rep	mRNA	230961	232637	.	+	.	ID=Os06t0103500-04;Name=Os06t0103500-04;Locus_id=Os06g0103500;Oryzabase Gene Symbol Synonym(s)=ACX1%2C OsACX1;Oryzabase Gene Name Synonym(s)=acyl-CoA oxidase 1;Note=Similar to predicted protein.;Transcript_evidence=AK104349 (DDBJ%2C Best hit),AK059993 (DDBJ%2C Best hit);ORF_evidence=E9L0E1 (UniProt);GO=Biological Process: fatty acid beta-oxidation (GO:0006635),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: peroxisome (GO:0005777),Molecular Function: acyl-CoA oxidase activity (GO:0003997),Molecular Function: oxidoreductase activity%2C acting on the CH-CH group of donors (GO:0016627);InterPro=Acyl-CoA oxidase%2C C-terminal (IPR002655),Acyl-CoA dehydrogenase/oxidase C-terminal (IPR009075),Acyl-CoA oxidase%2C peroxisomal (IPR023570);NIAS_FLcDNA=001-034-F12,006-301-D08;Oryzabase=22011;Expression=AK104349;TENOR=Os06t0103500-04;KEGG=Os06t0103500-04 (EC:1.3.3.6)
Chr06	irgsp1_rep	five_prime_UTR	230961	230961	.	+	.	Parent=Os06t0103500-04
Chr06	irgsp1_rep	CDS	230962	231018	.	+	0	Parent=Os06t0103500-04
Chr06	irgsp1_rep	CDS	231182	231302	.	+	0	Parent=Os06t0103500-04
Chr06	irgsp1_rep	CDS	231453	231563	.	+	2	Parent=Os06t0103500-04
Chr06	irgsp1_rep	CDS	231710	231779	.	+	2	Parent=Os06t0103500-04
Chr06	irgsp1_rep	CDS	231880	232063	.	+	1	Parent=Os06t0103500-04
Chr06	irgsp1_rep	CDS	232137	232346	.	+	0	Parent=Os06t0103500-04
Chr06	irgsp1_rep	three_prime_UTR	232347	232637	.	+	.	Parent=Os06t0103500-04
Chr06	irgsp1_rep	mRNA	233787	244624	.	+	.	ID=Os06t0103600-01;Name=Os06t0103600-01;Locus_id=Os06g0103600;RAP-DB Gene Symbol Synonym(s)=RA1;RAP-DB Gene Name Synonym(s)=rice albino 1;CGSNL Gene Symbol=RA1;CGSNL Gene Name=RICE ALBINO 1;Oryzabase Gene Symbol Synonym(s)=OsRA1;Oryzabase Gene Name Synonym(s)=rice albino 1;Note=Glycyl-tRNA synthetase%2C Chloroplast development%2C Establishment of the plastidic ribosome system;Transcript_evidence=AK072800;ORF_evidence=Q5VRH2;GO=Biological Process: glycyl-tRNA aminoacylation (GO:0006426),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: glycine-tRNA ligase activity (GO:0004820),Molecular Function: ATP binding (GO:0005524),Cellular Component: cytoplasm (GO:0005737);InterPro=Glycine-tRNA synthetase%2C heterodimeric (IPR006194),Glycine-tRNA ligase%2C alpha subunit (IPR002310),Glycine-tRNA ligase%2C beta subunit (IPR015944);NIAS_FLcDNA=J023135F01;Manual Curation=May 7%2C 2019;Literature_PMID=31015088;Oryzabase=23138;Expression=AK072800;TENOR=Os06t0103600-01;KEGG=Os06t0103600-01 (EC:6.1.1.14);Subcellular location=chloroplast (GO:0009507)
Chr06	irgsp1_rep	five_prime_UTR	233787	233824	.	+	.	Parent=Os06t0103600-01
Chr06	irgsp1_rep	CDS	233825	234189	.	+	0	Parent=Os06t0103600-01
Chr06	irgsp1_rep	CDS	234259	234340	.	+	1	Parent=Os06t0103600-01
Chr06	irgsp1_rep	CDS	234430	234493	.	+	0	Parent=Os06t0103600-01
Chr06	irgsp1_rep	CDS	234636	234691	.	+	2	Parent=Os06t0103600-01
Chr06	irgsp1_rep	CDS	234901	234978	.	+	0	Parent=Os06t0103600-01
Chr06	irgsp1_rep	CDS	235133	235207	.	+	0	Parent=Os06t0103600-01
Chr06	irgsp1_rep	CDS	235436	235506	.	+	0	Parent=Os06t0103600-01
Chr06	irgsp1_rep	CDS	235710	235826	.	+	1	Parent=Os06t0103600-01
Chr06	irgsp1_rep	CDS	235915	236016	.	+	1	Parent=Os06t0103600-01
Chr06	irgsp1_rep	CDS	236196	236316	.	+	1	Parent=Os06t0103600-01
Chr06	irgsp1_rep	CDS	236451	236537	.	+	0	Parent=Os06t0103600-01
Chr06	irgsp1_rep	CDS	236708	236794	.	+	0	Parent=Os06t0103600-01
Chr06	irgsp1_rep	CDS	237237	237338	.	+	0	Parent=Os06t0103600-01
Chr06	irgsp1_rep	CDS	237629	237692	.	+	0	Parent=Os06t0103600-01
Chr06	irgsp1_rep	CDS	238581	238636	.	+	2	Parent=Os06t0103600-01
Chr06	irgsp1_rep	CDS	239185	239256	.	+	0	Parent=Os06t0103600-01
Chr06	irgsp1_rep	CDS	239540	239622	.	+	0	Parent=Os06t0103600-01
Chr06	irgsp1_rep	CDS	239953	240001	.	+	1	Parent=Os06t0103600-01
Chr06	irgsp1_rep	CDS	240335	240397	.	+	0	Parent=Os06t0103600-01
Chr06	irgsp1_rep	CDS	240633	240722	.	+	0	Parent=Os06t0103600-01
Chr06	irgsp1_rep	CDS	240823	240909	.	+	0	Parent=Os06t0103600-01
Chr06	irgsp1_rep	CDS	241072	241146	.	+	0	Parent=Os06t0103600-01
Chr06	irgsp1_rep	CDS	241222	241280	.	+	0	Parent=Os06t0103600-01
Chr06	irgsp1_rep	CDS	241511	241604	.	+	1	Parent=Os06t0103600-01
Chr06	irgsp1_rep	CDS	241681	241899	.	+	0	Parent=Os06t0103600-01
Chr06	irgsp1_rep	CDS	241998	242092	.	+	0	Parent=Os06t0103600-01
Chr06	irgsp1_rep	CDS	242504	242594	.	+	1	Parent=Os06t0103600-01
Chr06	irgsp1_rep	CDS	242663	242767	.	+	0	Parent=Os06t0103600-01
Chr06	irgsp1_rep	CDS	242847	242885	.	+	0	Parent=Os06t0103600-01
Chr06	irgsp1_rep	CDS	243263	243352	.	+	0	Parent=Os06t0103600-01
Chr06	irgsp1_rep	CDS	243538	243639	.	+	0	Parent=Os06t0103600-01
Chr06	irgsp1_rep	CDS	243837	243918	.	+	0	Parent=Os06t0103600-01
Chr06	irgsp1_rep	CDS	244075	244160	.	+	2	Parent=Os06t0103600-01
Chr06	irgsp1_rep	CDS	244264	244362	.	+	0	Parent=Os06t0103600-01
Chr06	irgsp1_rep	three_prime_UTR	244363	244624	.	+	.	Parent=Os06t0103600-01
Chr06	irgsp1_rep	mRNA	241147	244573	.	+	.	ID=Os06t0103600-02;Name=Os06t0103600-02;Locus_id=Os06g0103600;CGSNL Gene Symbol=RA1;CGSNL Gene Name=RICE ALBINO 1;Oryzabase Gene Symbol Synonym(s)=OsRA1;Oryzabase Gene Name Synonym(s)=rice albino 1;Note=Hypothetical conserved gene.;Transcript_evidence=AK066011 (DDBJ%2C Best hit);ORF_evidence=B8B198 (UniProt);GO=Biological Process: glycyl-tRNA aminoacylation (GO:0006426),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: glycine-tRNA ligase activity (GO:0004820),Molecular Function: ATP binding (GO:0005524);InterPro=Glycyl-tRNA synthetase%2C class II%2C heterodimeric (IPR006194),Glycyl-tRNA synthetase%2C class IIc%2C beta subunit (IPR015944);NIAS_FLcDNA=J013048K11;Oryzabase=23138;Expression=AK066011;TENOR=Os06t0103600-02;KEGG=Os06t0103600-02 (EC:6.1.1.14)
Chr06	irgsp1_rep	five_prime_UTR	241147	241460	.	+	.	Parent=Os06t0103600-02
Chr06	irgsp1_rep	CDS	241461	241604	.	+	0	Parent=Os06t0103600-02
Chr06	irgsp1_rep	CDS	241681	241899	.	+	0	Parent=Os06t0103600-02
Chr06	irgsp1_rep	CDS	241998	242092	.	+	0	Parent=Os06t0103600-02
Chr06	irgsp1_rep	CDS	242504	242594	.	+	1	Parent=Os06t0103600-02
Chr06	irgsp1_rep	CDS	242663	242767	.	+	0	Parent=Os06t0103600-02
Chr06	irgsp1_rep	CDS	242847	242930	.	+	0	Parent=Os06t0103600-02
Chr06	irgsp1_rep	three_prime_UTR	242931	243352	.	+	.	Parent=Os06t0103600-02
Chr06	irgsp1_rep	three_prime_UTR	243538	243639	.	+	.	Parent=Os06t0103600-02
Chr06	irgsp1_rep	three_prime_UTR	243837	244573	.	+	.	Parent=Os06t0103600-02
Chr06	irgsp1_rep	mRNA	244855	247798	.	-	.	ID=Os06t0103700-01;Name=Os06t0103700-01;Locus_id=Os06g0103700;Note=Similar to Glutamine cyclotransferase precursor (EC 2.3.2.5).;Transcript_evidence=AK070147 (DDBJ%2C Best hit);ORF_evidence=NP_001150955.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutamine cyclotransferase (IPR007788),WD40/YVTN repeat-like-containing domain (IPR015943);NIAS_FLcDNA=J023041F14;Expression=AK070147;TENOR=Os06t0103700-01;KEGG=Os06t0103700-01 (EC:2.3.2.5)
Chr06	irgsp1_rep	five_prime_UTR	247749	247798	.	-	.	Parent=Os06t0103700-01
Chr06	irgsp1_rep	CDS	247422	247748	.	-	0	Parent=Os06t0103700-01
Chr06	irgsp1_rep	CDS	247255	247311	.	-	0	Parent=Os06t0103700-01
Chr06	irgsp1_rep	CDS	246893	246928	.	-	0	Parent=Os06t0103700-01
Chr06	irgsp1_rep	CDS	246744	246808	.	-	0	Parent=Os06t0103700-01
Chr06	irgsp1_rep	CDS	246573	246636	.	-	1	Parent=Os06t0103700-01
Chr06	irgsp1_rep	CDS	246069	246186	.	-	0	Parent=Os06t0103700-01
Chr06	irgsp1_rep	CDS	245829	245926	.	-	2	Parent=Os06t0103700-01
Chr06	irgsp1_rep	CDS	245621	245691	.	-	0	Parent=Os06t0103700-01
Chr06	irgsp1_rep	CDS	245500	245527	.	-	1	Parent=Os06t0103700-01
Chr06	irgsp1_rep	CDS	245279	245333	.	-	0	Parent=Os06t0103700-01
Chr06	irgsp1_rep	CDS	245068	245177	.	-	2	Parent=Os06t0103700-01
Chr06	irgsp1_rep	three_prime_UTR	244855	245067	.	-	.	Parent=Os06t0103700-01
Chr06	irgsp1_rep	mRNA	244870	246142	.	-	.	ID=Os06t0103700-02;Name=Os06t0103700-02;Locus_id=Os06g0103700;Note=Similar to glutamine cyclotransferase.;Transcript_evidence=AK122135 (DDBJ%2C Best hit);ORF_evidence=NP_001150955.1 (RefSeq);InterPro=Glutamine cyclotransferase (IPR007788);NIAS_FLcDNA=J033133J03;Expression=AK122135;TENOR=Os06t0103700-02;KEGG=Os06t0103700-02
Chr06	irgsp1_rep	five_prime_UTR	246142	246142	.	-	.	Parent=Os06t0103700-02
Chr06	irgsp1_rep	CDS	246069	246141	.	-	0	Parent=Os06t0103700-02
Chr06	irgsp1_rep	CDS	245829	245926	.	-	2	Parent=Os06t0103700-02
Chr06	irgsp1_rep	CDS	245621	245691	.	-	0	Parent=Os06t0103700-02
Chr06	irgsp1_rep	CDS	245500	245527	.	-	1	Parent=Os06t0103700-02
Chr06	irgsp1_rep	CDS	245279	245333	.	-	0	Parent=Os06t0103700-02
Chr06	irgsp1_rep	CDS	245068	245177	.	-	2	Parent=Os06t0103700-02
Chr06	irgsp1_rep	three_prime_UTR	244870	245067	.	-	.	Parent=Os06t0103700-02
Chr06	irgsp1_rep	mRNA	266683	271990	.	+	.	ID=Os06t0103800-01;Name=Os06t0103800-01;Locus_id=Os06g0103800;Note=Protein of unknown function DUF125%2C transmembrane family protein.;Transcript_evidence=AK067892 (DDBJ%2C Best hit);ORF_evidence=Q5VRH0 (UniProt);InterPro=Domain of unknown function DUF125%2C transmembrane (IPR008217);NIAS_FLcDNA=J013123L02;Oryzabase=23053;Expression=AK067892;TENOR=Os06t0103800-01;KEGG=Os06t0103800-01
Chr06	irgsp1_rep	five_prime_UTR	266683	266751	.	+	.	Parent=Os06t0103800-01
Chr06	irgsp1_rep	CDS	266752	266968	.	+	0	Parent=Os06t0103800-01
Chr06	irgsp1_rep	CDS	268786	269460	.	+	2	Parent=Os06t0103800-01
Chr06	irgsp1_rep	CDS	269909	270073	.	+	2	Parent=Os06t0103800-01
Chr06	irgsp1_rep	CDS	270163	270438	.	+	2	Parent=Os06t0103800-01
Chr06	irgsp1_rep	CDS	270547	270663	.	+	2	Parent=Os06t0103800-01
Chr06	irgsp1_rep	CDS	270776	270853	.	+	2	Parent=Os06t0103800-01
Chr06	irgsp1_rep	CDS	270930	271184	.	+	2	Parent=Os06t0103800-01
Chr06	irgsp1_rep	CDS	271262	271323	.	+	2	Parent=Os06t0103800-01
Chr06	irgsp1_rep	CDS	271403	271816	.	+	0	Parent=Os06t0103800-01
Chr06	irgsp1_rep	three_prime_UTR	271817	271990	.	+	.	Parent=Os06t0103800-01
Chr06	irgsp1_rep	mRNA	271908	275436	.	-	.	ID=Os06t0103900-01;Name=Os06t0103900-01;Locus_id=Os06g0103900;Note=Protein of unknown function DUF248%2C methyltransferase putative family protein.;Transcript_evidence=AK111870 (DDBJ%2C Best hit);ORF_evidence=NP_001147806.1 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Protein of unknown function DUF248%2C methyltransferase putative (IPR004159);NIAS_FLcDNA=J033045F24;Expression=AK111870;TENOR=Os06t0103900-01;KEGG=Os06t0103900-01
Chr06	irgsp1_rep	five_prime_UTR	275308	275436	.	-	.	Parent=Os06t0103900-01
Chr06	irgsp1_rep	five_prime_UTR	275120	275124	.	-	.	Parent=Os06t0103900-01
Chr06	irgsp1_rep	CDS	274427	275119	.	-	0	Parent=Os06t0103900-01
Chr06	irgsp1_rep	CDS	274133	274343	.	-	0	Parent=Os06t0103900-01
Chr06	irgsp1_rep	CDS	273721	274018	.	-	2	Parent=Os06t0103900-01
Chr06	irgsp1_rep	CDS	272628	273095	.	-	1	Parent=Os06t0103900-01
Chr06	irgsp1_rep	CDS	272199	272424	.	-	1	Parent=Os06t0103900-01
Chr06	irgsp1_rep	three_prime_UTR	271908	272198	.	-	.	Parent=Os06t0103900-01
Chr06	irgsp1_rep	mRNA	272213	275127	.	+	.	ID=Os06t0103950-00;Name=Os06t0103950-00;Locus_id=Os06g0103950;Note=Hypothetical protein.;Transcript_evidence=tplb0027d14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0103950-00
Chr06	irgsp1_rep	five_prime_UTR	272213	272412	.	+	.	Parent=Os06t0103950-00
Chr06	irgsp1_rep	five_prime_UTR	272616	273091	.	+	.	Parent=Os06t0103950-00
Chr06	irgsp1_rep	five_prime_UTR	273712	273992	.	+	.	Parent=Os06t0103950-00
Chr06	irgsp1_rep	five_prime_UTR	274113	274340	.	+	.	Parent=Os06t0103950-00
Chr06	irgsp1_rep	five_prime_UTR	274424	274513	.	+	.	Parent=Os06t0103950-00
Chr06	irgsp1_rep	CDS	274514	274840	.	+	0	Parent=Os06t0103950-00
Chr06	irgsp1_rep	three_prime_UTR	274841	275127	.	+	.	Parent=Os06t0103950-00
Chr06	irgsp1_rep	mRNA	276729	282165	.	-	.	ID=Os06t0104000-01;Name=Os06t0104000-01;Locus_id=Os06g0104000;Note=Protein of unknown function DUF3754 domain containing protein.;Transcript_evidence=AK068490 (DDBJ%2C Best hit);ORF_evidence=B9FR27 (UniProt);InterPro=Protein of unknown function DUF3754 (IPR022227);NIAS_FLcDNA=J013155I22;Expression=AK068490;TENOR=Os06t0104000-01;KEGG=Os06t0104000-01
Chr06	irgsp1_rep	five_prime_UTR	282138	282165	.	-	.	Parent=Os06t0104000-01
Chr06	irgsp1_rep	CDS	281752	282137	.	-	0	Parent=Os06t0104000-01
Chr06	irgsp1_rep	CDS	281422	281679	.	-	1	Parent=Os06t0104000-01
Chr06	irgsp1_rep	CDS	281149	281328	.	-	1	Parent=Os06t0104000-01
Chr06	irgsp1_rep	CDS	280918	281053	.	-	1	Parent=Os06t0104000-01
Chr06	irgsp1_rep	CDS	279888	280222	.	-	0	Parent=Os06t0104000-01
Chr06	irgsp1_rep	CDS	279593	279722	.	-	1	Parent=Os06t0104000-01
Chr06	irgsp1_rep	CDS	279006	279134	.	-	0	Parent=Os06t0104000-01
Chr06	irgsp1_rep	CDS	278709	278753	.	-	0	Parent=Os06t0104000-01
Chr06	irgsp1_rep	CDS	278496	278575	.	-	0	Parent=Os06t0104000-01
Chr06	irgsp1_rep	CDS	278302	278398	.	-	1	Parent=Os06t0104000-01
Chr06	irgsp1_rep	CDS	277868	277957	.	-	0	Parent=Os06t0104000-01
Chr06	irgsp1_rep	CDS	277717	277770	.	-	0	Parent=Os06t0104000-01
Chr06	irgsp1_rep	CDS	277563	277628	.	-	0	Parent=Os06t0104000-01
Chr06	irgsp1_rep	CDS	277319	277484	.	-	0	Parent=Os06t0104000-01
Chr06	irgsp1_rep	CDS	277108	277112	.	-	2	Parent=Os06t0104000-01
Chr06	irgsp1_rep	three_prime_UTR	276729	277107	.	-	.	Parent=Os06t0104000-01
Chr06	irgsp1_rep	mRNA	277318	281892	.	+	.	ID=Os06t0104050-00;Name=Os06t0104050-00;Locus_id=Os06g0104050;Note=Non-protein coding transcript.;Transcript_evidence=tplb0045h12 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os06t0104050-00
Chr06	irgsp1_rep	exon	277318	277484	.	+	.	Parent=Os06t0104050-00
Chr06	irgsp1_rep	exon	277563	277666	.	+	.	Parent=Os06t0104050-00
Chr06	irgsp1_rep	exon	277856	277957	.	+	.	Parent=Os06t0104050-00
Chr06	irgsp1_rep	exon	278302	278393	.	+	.	Parent=Os06t0104050-00
Chr06	irgsp1_rep	exon	278491	278605	.	+	.	Parent=Os06t0104050-00
Chr06	irgsp1_rep	exon	278989	279130	.	+	.	Parent=Os06t0104050-00
Chr06	irgsp1_rep	exon	279589	279721	.	+	.	Parent=Os06t0104050-00
Chr06	irgsp1_rep	exon	279887	280205	.	+	.	Parent=Os06t0104050-00
Chr06	irgsp1_rep	exon	280899	281068	.	+	.	Parent=Os06t0104050-00
Chr06	irgsp1_rep	exon	281162	281423	.	+	.	Parent=Os06t0104050-00
Chr06	irgsp1_rep	exon	281494	281690	.	+	.	Parent=Os06t0104050-00
Chr06	irgsp1_rep	exon	281795	281892	.	+	.	Parent=Os06t0104050-00
Chr06	irgsp1_rep	mRNA	282348	284538	.	+	.	ID=Os06t0104100-01;Name=Os06t0104100-01;Locus_id=Os06g0104100;Note=Squalene/phytoene synthase domain containing protein.;Transcript_evidence=AK109910 (DDBJ%2C Best hit);ORF_evidence=NP_001151045.1 (RefSeq);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: transferase activity (GO:0016740);InterPro=Squalene/phytoene synthase (IPR002060),Terpenoid synthase (IPR008949);NIAS_FLcDNA=002-149-G11;Expression=AK109910;TENOR=Os06t0104100-01;KEGG=Os06t0104100-01
Chr06	irgsp1_rep	five_prime_UTR	282348	282513	.	+	.	Parent=Os06t0104100-01
Chr06	irgsp1_rep	five_prime_UTR	283270	283300	.	+	.	Parent=Os06t0104100-01
Chr06	irgsp1_rep	CDS	283301	284209	.	+	0	Parent=Os06t0104100-01
Chr06	irgsp1_rep	three_prime_UTR	284210	284538	.	+	.	Parent=Os06t0104100-01
Chr06	irgsp1_rep	mRNA	289313	294071	.	-	.	ID=Os06t0104200-01;Name=Os06t0104200-01;Locus_id=Os06g0104200;RAP-DB Gene Symbol Synonym(s)=OsSWN7;RAP-DB Gene Name Synonym(s)=secondary wall NAC transcription factor 7%2C secondary wall-associated NAC domain protein 7;CGSNL Gene Symbol=NAC90;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 90;Oryzabase Gene Symbol Synonym(s)=OsSWN7%2C SWN7%2C ONAC090%2C ONAC90%2C VND6%2C VND4/5/6%2C OsVND6%2C OsVND4/5/6%2C DLN155%2C OsDLN155;Oryzabase Gene Name Synonym(s)=secondary wall NAC transcription factor 7%2C secondary wall-associated NAC 7%2C SECONDARY WALL NAC DOMAIN PROTEIN 7%2C NAC domain-containing protein 090%2C NAC domain-containing protein 90%2C VASCULAR- RELATED NAC-DOMAIN 6%2C DLN repressor 155%2C DLN motif protein 155;Note=NAC transcription factor%2C Regulation of secondary wall biosynthesis;Transcript_evidence=AK069423;ORF_evidence=Q8H624;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=NAC domain superfamily (IPR036093),NAC domain (IPR003441);NIAS_FLcDNA=J023019N04;Manual Curation=October 20%2C 2020;Literature_PMID=21908441;Oryzabase=15023;Expression=AK069423;TENOR=Os06t0104200-01;KEGG=Os06t0104200-01
Chr06	irgsp1_rep	five_prime_UTR	293482	294071	.	-	.	Parent=Os06t0104200-01
Chr06	irgsp1_rep	five_prime_UTR	292948	293195	.	-	.	Parent=Os06t0104200-01
Chr06	irgsp1_rep	five_prime_UTR	291032	291085	.	-	.	Parent=Os06t0104200-01
Chr06	irgsp1_rep	CDS	290842	291031	.	-	0	Parent=Os06t0104200-01
Chr06	irgsp1_rep	CDS	290441	290733	.	-	2	Parent=Os06t0104200-01
Chr06	irgsp1_rep	CDS	289676	290287	.	-	0	Parent=Os06t0104200-01
Chr06	irgsp1_rep	three_prime_UTR	289313	289675	.	-	.	Parent=Os06t0104200-01
Chr06	irgsp1_rep	mRNA	297316	301778	.	-	.	ID=Os06t0104300-01;Name=Os06t0104300-01;Locus_id=Os06g0104300;Note=Similar to Pectinesterase-like protein.;Transcript_evidence=AK102494 (DDBJ%2C Best hit);ORF_evidence=Q1EPX7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: copper ion binding (GO:0005507),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Multicopper oxidase%2C type 1 (IPR001117),Cupredoxin (IPR008972),Multicopper oxidase%2C type 2 (IPR011706),Multicopper oxidase%2C type 3 (IPR011707);NIAS_FLcDNA=J033095A13;Expression=AK102494;TENOR=Os06t0104300-01;KEGG=Os06t0104300-01
Chr06	irgsp1_rep	five_prime_UTR	301705	301778	.	-	.	Parent=Os06t0104300-01
Chr06	irgsp1_rep	CDS	301567	301704	.	-	0	Parent=Os06t0104300-01
Chr06	irgsp1_rep	CDS	300849	300958	.	-	0	Parent=Os06t0104300-01
Chr06	irgsp1_rep	CDS	300461	300731	.	-	1	Parent=Os06t0104300-01
Chr06	irgsp1_rep	CDS	300235	300373	.	-	0	Parent=Os06t0104300-01
Chr06	irgsp1_rep	CDS	299590	299956	.	-	2	Parent=Os06t0104300-01
Chr06	irgsp1_rep	CDS	298512	298877	.	-	1	Parent=Os06t0104300-01
Chr06	irgsp1_rep	CDS	298348	298426	.	-	1	Parent=Os06t0104300-01
Chr06	irgsp1_rep	CDS	297903	298105	.	-	0	Parent=Os06t0104300-01
Chr06	irgsp1_rep	CDS	297681	297789	.	-	1	Parent=Os06t0104300-01
Chr06	irgsp1_rep	three_prime_UTR	297316	297680	.	-	.	Parent=Os06t0104300-01
Chr06	irgsp1_rep	mRNA	298782	300960	.	+	.	ID=Os06t0104350-00;Name=Os06t0104350-00;Locus_id=Os06g0104350;Note=Non-protein coding transcript.;Transcript_evidence=BT086104 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0104350-00
Chr06	irgsp1_rep	exon	298782	298862	.	+	.	Parent=Os06t0104350-00
Chr06	irgsp1_rep	exon	299573	300049	.	+	.	Parent=Os06t0104350-00
Chr06	irgsp1_rep	exon	300165	300730	.	+	.	Parent=Os06t0104350-00
Chr06	irgsp1_rep	exon	300848	300960	.	+	.	Parent=Os06t0104350-00
Chr06	irgsp1_rep	mRNA	306006	308707	.	-	.	ID=Os06t0104400-01;Name=Os06t0104400-01;Locus_id=Os06g0104400;Note=Similar to IQ calmodulin-binding motif family protein.;Transcript_evidence=AK103829 (DDBJ%2C Best hit);ORF_evidence=NP_001150057.1 (RefSeq);NIAS_FLcDNA=J033148A06;Expression=AK103829;TENOR=Os06t0104400-01;KEGG=Os06t0104400-01
Chr06	irgsp1_rep	five_prime_UTR	308610	308707	.	-	.	Parent=Os06t0104400-01
Chr06	irgsp1_rep	CDS	307824	308609	.	-	0	Parent=Os06t0104400-01
Chr06	irgsp1_rep	CDS	307248	307523	.	-	0	Parent=Os06t0104400-01
Chr06	irgsp1_rep	CDS	306457	306663	.	-	0	Parent=Os06t0104400-01
Chr06	irgsp1_rep	three_prime_UTR	306006	306456	.	-	.	Parent=Os06t0104400-01
Chr06	irgsp1_rep	mRNA	306195	308643	.	-	.	ID=Os06t0104400-02;Name=Os06t0104400-02;Locus_id=Os06g0104400;Note=IQ calmodulin-binding region domain containing protein.;Transcript_evidence=AK060638 (DDBJ%2C Best hit);ORF_evidence=NP_001150057.1 (RefSeq);NIAS_FLcDNA=001-027-D03;Expression=AK060638;TENOR=Os06t0104400-02;KEGG=Os06t0104400-02
Chr06	irgsp1_rep	five_prime_UTR	308610	308643	.	-	.	Parent=Os06t0104400-02
Chr06	irgsp1_rep	CDS	307824	308609	.	-	0	Parent=Os06t0104400-02
Chr06	irgsp1_rep	CDS	307360	307523	.	-	0	Parent=Os06t0104400-02
Chr06	irgsp1_rep	CDS	307249	307258	.	-	1	Parent=Os06t0104400-02
Chr06	irgsp1_rep	three_prime_UTR	307248	307248	.	-	.	Parent=Os06t0104400-02
Chr06	irgsp1_rep	three_prime_UTR	306195	306663	.	-	.	Parent=Os06t0104400-02
Chr06	irgsp1_rep	mRNA	344139	344692	.	+	.	ID=Os06t0104800-00;Name=Os06t0104800-00;Locus_id=Os06g0104800;Note=Similar to Proline-rich protein.;Transcript_evidence=AK333542 (DDBJ);ORF_evidence=C3SAB4 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);TENOR=Os06t0104800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	344139	344507	.	+	0	Parent=Os06t0104800-00
Chr06	irgsp1_rep	three_prime_UTR	344508	344692	.	+	.	Parent=Os06t0104800-00
Chr06	irgsp1_rep	mRNA	347009	348516	.	-	.	ID=Os06t0104900-01;Name=Os06t0104900-01;Locus_id=Os06g0104900;Note=Similar to L-lactate dehydrogenase B (EC 1.1.1.27) (LDH-B) (Fragment).;Transcript_evidence=AK106504 (DDBJ%2C Best hit);ORF_evidence=A2Y8B2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: glycolysis (GO:0006096),Biological Process: cellular carbohydrate metabolic process (GO:0044262),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: L-lactate dehydrogenase activity (GO:0004459),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616);InterPro=Lactate/malate dehydrogenase%2C N-terminal (IPR001236),L-lactate/malate dehydrogenase (IPR001557),L-lactate dehydrogenase (IPR011304),Lactate dehydrogenase/glycoside hydrolase%2C family 4%2C C-terminal (IPR015955),NAD(P)-binding domain (IPR016040),L-lactate dehydrogenase%2C active site (IPR018177),Lactate/malate dehydrogenase%2C C-terminal (IPR022383);NIAS_FLcDNA=002-105-F11;Expression=AK106504;TENOR=Os06t0104900-01;KEGG=Os06t0104900-01 (EC:1.1.1.27)
Chr06	irgsp1_rep	five_prime_UTR	348356	348516	.	-	.	Parent=Os06t0104900-01
Chr06	irgsp1_rep	CDS	347273	348355	.	-	0	Parent=Os06t0104900-01
Chr06	irgsp1_rep	three_prime_UTR	347009	347272	.	-	.	Parent=Os06t0104900-01
Chr06	irgsp1_rep	mRNA	359669	361668	.	+	.	ID=Os06t0105100-00;Name=Os06t0105100-00;Locus_id=Os06g0105100;CGSNL Gene Symbol=WRKY86;CGSNL Gene Name=WRKY GENE 86;Oryzabase Gene Symbol Synonym(s)=OsWRKY86%2C OsaLeg5%2C Leg5;Oryzabase Gene Name Synonym(s)=legumain 5;Note=Similar to Legumain.;Transcript_evidence=AM941115 (DDBJ);ORF_evidence=E5AXU9 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197);InterPro=Peptidase C13%2C legumain (IPR001096);Oryzabase=9238;TENOR=Os06t0105100-00;KEGG=Os06t0105100-00 (EC:3.4.22.34)
Chr06	irgsp1_rep	CDS	359669	360007	.	+	0	Parent=Os06t0105100-00
Chr06	irgsp1_rep	CDS	360458	360617	.	+	0	Parent=Os06t0105100-00
Chr06	irgsp1_rep	CDS	360723	361582	.	+	2	Parent=Os06t0105100-00
Chr06	irgsp1_rep	three_prime_UTR	361583	361668	.	+	.	Parent=Os06t0105100-00
Chr06	irgsp1_rep	mRNA	364787	366859	.	-	.	ID=Os06t0105300-01;Name=Os06t0105300-01;Locus_id=Os06g0105300;Note=Hypothetical protein.;Transcript_evidence=AK106868 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-118-D05;Expression=AK106868;TENOR=Os06t0105300-01;KEGG=Os06t0105300-01
Chr06	irgsp1_rep	five_prime_UTR	366681	366859	.	-	.	Parent=Os06t0105300-01
Chr06	irgsp1_rep	CDS	365238	366680	.	-	0	Parent=Os06t0105300-01
Chr06	irgsp1_rep	three_prime_UTR	365103	365237	.	-	.	Parent=Os06t0105300-01
Chr06	irgsp1_rep	three_prime_UTR	364787	364930	.	-	.	Parent=Os06t0105300-01
Chr06	irgsp1_rep	mRNA	365301	367066	.	+	.	ID=Os06t0105350-01;Name=Os06t0105350-01;Locus_id=Os06g0105350;RAP-DB Gene Symbol Synonym(s)=OsHAM4;RAP-DB Gene Name Synonym(s)=hairy meristem 4;CGSNL Gene Symbol=GRAS31;CGSNL Gene Name=GRAS PROTEIN 31;Oryzabase Gene Symbol Synonym(s)=OsGRAS-31%2C OsGRAS31%2C GRAS-31;Oryzabase Gene Name Synonym(s)=GRAS protein 31;Note=GRAS (GAI-RGA-SCR) plant-specific transcription factor%2C Maintenance of shoot apical meristem indeterminacy%2C Regulation of vegetative to reproductive phase change;Transcript_evidence=JX310318 (Dongjin);ORF_evidence=A0A1B0NJQ7;InterPro=Transcription factor GRAS (IPR005202);Manual Curation=December 26%2C 2017;Literature_PMID=26023934;Oryzabase=22809;TENOR=Os06t0105350-00;KEGG=Os06t0105350-00
Chr06	irgsp1_rep	five_prime_UTR	365301	365315	.	+	.	Parent=Os06t0105350-01
Chr06	irgsp1_rep	CDS	365316	366758	.	+	0	Parent=Os06t0105350-01
Chr06	irgsp1_rep	three_prime_UTR	366759	367066	.	+	.	Parent=Os06t0105350-01
Chr06	irgsp1_rep	mRNA	370096	374968	.	-	.	ID=Os06t0105400-01;Name=Os06t0105400-01;Locus_id=Os06g0105400;Note=Similar to dihydrolipoamide S-acetyltransferase.;Transcript_evidence=AK103793 (DDBJ%2C Best hit);ORF_evidence=NP_001104936.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Biotin/lipoyl attachment (IPR000089),2-oxoacid dehydrogenase acyltransferase%2C catalytic domain (IPR001078),2-oxo acid dehydrogenase%2C lipoyl-binding site (IPR003016),E3 binding (IPR004167),Single hybrid motif (IPR011053),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J033145O03;Expression=AK103793;TENOR=Os06t0105400-01;KEGG=Os06t0105400-01 (EC:2.3.1.12)
Chr06	irgsp1_rep	five_prime_UTR	374895	374968	.	-	.	Parent=Os06t0105400-01
Chr06	irgsp1_rep	CDS	374865	374894	.	-	0	Parent=Os06t0105400-01
Chr06	irgsp1_rep	CDS	374124	374217	.	-	0	Parent=Os06t0105400-01
Chr06	irgsp1_rep	CDS	373805	373905	.	-	2	Parent=Os06t0105400-01
Chr06	irgsp1_rep	CDS	373611	373708	.	-	0	Parent=Os06t0105400-01
Chr06	irgsp1_rep	CDS	373462	373502	.	-	1	Parent=Os06t0105400-01
Chr06	irgsp1_rep	CDS	373256	373311	.	-	2	Parent=Os06t0105400-01
Chr06	irgsp1_rep	CDS	373045	373119	.	-	0	Parent=Os06t0105400-01
Chr06	irgsp1_rep	CDS	372845	372937	.	-	0	Parent=Os06t0105400-01
Chr06	irgsp1_rep	CDS	372490	372735	.	-	0	Parent=Os06t0105400-01
Chr06	irgsp1_rep	CDS	372337	372409	.	-	0	Parent=Os06t0105400-01
Chr06	irgsp1_rep	CDS	372065	372150	.	-	2	Parent=Os06t0105400-01
Chr06	irgsp1_rep	CDS	371890	371975	.	-	0	Parent=Os06t0105400-01
Chr06	irgsp1_rep	CDS	371606	371681	.	-	1	Parent=Os06t0105400-01
Chr06	irgsp1_rep	CDS	371379	371446	.	-	0	Parent=Os06t0105400-01
Chr06	irgsp1_rep	CDS	371227	371293	.	-	1	Parent=Os06t0105400-01
Chr06	irgsp1_rep	CDS	371055	371156	.	-	0	Parent=Os06t0105400-01
Chr06	irgsp1_rep	three_prime_UTR	370889	371054	.	-	.	Parent=Os06t0105400-01
Chr06	irgsp1_rep	three_prime_UTR	370668	370760	.	-	.	Parent=Os06t0105400-01
Chr06	irgsp1_rep	three_prime_UTR	370096	370568	.	-	.	Parent=Os06t0105400-01
Chr06	irgsp1_rep	mRNA	370273	374951	.	-	.	ID=Os06t0105400-02;Name=Os06t0105400-02;Locus_id=Os06g0105400;Note=Similar to Dihydrolipoamide S-acetyltransferase (EC 2.3.1.12).;Transcript_evidence=AK071985 (DDBJ%2C Best hit);ORF_evidence=NP_001104936.1 (RefSeq);GO=Biological Process: pyruvate metabolic process (GO:0006090),Biological Process: metabolic process (GO:0008152),Cellular Component: pyruvate dehydrogenase complex (GO:0045254),Molecular Function: dihydrolipoyllysine-residue acetyltransferase activity (GO:0004742),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Biotin/lipoyl attachment (IPR000089),2-oxoacid dehydrogenase acyltransferase%2C catalytic domain (IPR001078),2-oxo acid dehydrogenase%2C lipoyl-binding site (IPR003016),E3 binding (IPR004167),Dihydrolipoamide acetyltransferase%2C long form (IPR006257),Single hybrid motif (IPR011053),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J013091O21;Expression=AK071985;TENOR=Os06t0105400-02;KEGG=Os06t0105400-02 (EC:2.3.1.12)
Chr06	irgsp1_rep	five_prime_UTR	374895	374951	.	-	.	Parent=Os06t0105400-02
Chr06	irgsp1_rep	CDS	374865	374894	.	-	0	Parent=Os06t0105400-02
Chr06	irgsp1_rep	CDS	374124	374217	.	-	0	Parent=Os06t0105400-02
Chr06	irgsp1_rep	CDS	373805	373905	.	-	2	Parent=Os06t0105400-02
Chr06	irgsp1_rep	CDS	373611	373708	.	-	0	Parent=Os06t0105400-02
Chr06	irgsp1_rep	CDS	373462	373502	.	-	1	Parent=Os06t0105400-02
Chr06	irgsp1_rep	CDS	373256	373311	.	-	2	Parent=Os06t0105400-02
Chr06	irgsp1_rep	CDS	373045	373119	.	-	0	Parent=Os06t0105400-02
Chr06	irgsp1_rep	CDS	372845	372937	.	-	0	Parent=Os06t0105400-02
Chr06	irgsp1_rep	CDS	372490	372735	.	-	0	Parent=Os06t0105400-02
Chr06	irgsp1_rep	CDS	372337	372409	.	-	0	Parent=Os06t0105400-02
Chr06	irgsp1_rep	CDS	372065	372150	.	-	2	Parent=Os06t0105400-02
Chr06	irgsp1_rep	CDS	371890	371975	.	-	0	Parent=Os06t0105400-02
Chr06	irgsp1_rep	CDS	371606	371681	.	-	1	Parent=Os06t0105400-02
Chr06	irgsp1_rep	CDS	371379	371446	.	-	0	Parent=Os06t0105400-02
Chr06	irgsp1_rep	CDS	371227	371293	.	-	1	Parent=Os06t0105400-02
Chr06	irgsp1_rep	CDS	371061	371156	.	-	0	Parent=Os06t0105400-02
Chr06	irgsp1_rep	CDS	370889	370991	.	-	0	Parent=Os06t0105400-02
Chr06	irgsp1_rep	CDS	370668	370760	.	-	2	Parent=Os06t0105400-02
Chr06	irgsp1_rep	CDS	370498	370568	.	-	2	Parent=Os06t0105400-02
Chr06	irgsp1_rep	three_prime_UTR	370273	370497	.	-	.	Parent=Os06t0105400-02
Chr06	irgsp1_rep	mRNA	375711	382665	.	+	.	ID=Os06t0105500-01;Name=Os06t0105500-01;Locus_id=Os06g0105500;RAP-DB Gene Symbol Synonym(s)=OsPRMT7;RAP-DB Gene Name Synonym(s)=protein arginine methyltransferase 7;CGSNL Gene Symbol=PRMT7;CGSNL Gene Name=PROTEIN ARGININE METHYLTRANSFERASE 7;Oryzabase Gene Symbol Synonym(s)=OsPRMT7;Oryzabase Gene Name Synonym(s)=protein arginine methyltransferase 7;Note=Protein arginine methyltransferase;Transcript_evidence=AK099594;ORF_evidence=Q5VS72;GO=Biological Process: protein methylation (GO:0006479),Molecular Function: methyltransferase activity (GO:0008168);InterPro=S-adenosyl-L-methionine-dependent methyltransferase (IPR029063),Protein arginine N-methyltransferase (IPR025799),Protein arginine N-methyltransferase PRMT7 (IPR014644);NIAS_FLcDNA=J013044A06;Manual Curation=September 2%2C 2020;Literature_PMID=21853042;Oryzabase=9678;Expression=AK099594;TENOR=Os06t0105500-01;KEGG=Os06t0105500-01 (EC:2.1.1.-)
Chr06	irgsp1_rep	five_prime_UTR	375711	375784	.	+	.	Parent=Os06t0105500-01
Chr06	irgsp1_rep	CDS	375785	376089	.	+	0	Parent=Os06t0105500-01
Chr06	irgsp1_rep	CDS	376868	377093	.	+	1	Parent=Os06t0105500-01
Chr06	irgsp1_rep	CDS	377758	377883	.	+	0	Parent=Os06t0105500-01
Chr06	irgsp1_rep	CDS	377978	378142	.	+	0	Parent=Os06t0105500-01
Chr06	irgsp1_rep	CDS	378219	378337	.	+	0	Parent=Os06t0105500-01
Chr06	irgsp1_rep	CDS	378411	378502	.	+	1	Parent=Os06t0105500-01
Chr06	irgsp1_rep	CDS	378966	379222	.	+	2	Parent=Os06t0105500-01
Chr06	irgsp1_rep	CDS	379610	379846	.	+	0	Parent=Os06t0105500-01
Chr06	irgsp1_rep	CDS	379986	380059	.	+	0	Parent=Os06t0105500-01
Chr06	irgsp1_rep	CDS	381224	381317	.	+	1	Parent=Os06t0105500-01
Chr06	irgsp1_rep	CDS	381422	381571	.	+	0	Parent=Os06t0105500-01
Chr06	irgsp1_rep	CDS	381646	381720	.	+	0	Parent=Os06t0105500-01
Chr06	irgsp1_rep	CDS	382109	382205	.	+	0	Parent=Os06t0105500-01
Chr06	irgsp1_rep	CDS	382294	382439	.	+	2	Parent=Os06t0105500-01
Chr06	irgsp1_rep	three_prime_UTR	382440	382665	.	+	.	Parent=Os06t0105500-01
Chr06	irgsp1_rep	mRNA	386407	390451	.	+	.	ID=Os06t0105550-01;Name=Os06t0105550-01;Locus_id=Os06g0105550;Note=Non-protein coding transcript.;Transcript_evidence=AK289127 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090098B22;TENOR=Os06t0105550-01
Chr06	irgsp1_rep	exon	386407	390451	.	+	.	Parent=Os06t0105550-01
Chr06	irgsp1_rep	mRNA	387238	390685	.	-	.	ID=Os06t0105600-01;Name=Os06t0105600-01;Locus_id=Os06g0105600;Note=Conserved hypothetical protein.;Transcript_evidence=AK106556 (DDBJ%2C Best hit);ORF_evidence=B9FR36 (UniProt);NIAS_FLcDNA=002-108-H03;TENOR=Os06t0105600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	390620	390685	.	-	0	Parent=Os06t0105600-01
Chr06	irgsp1_rep	CDS	390122	390250	.	-	0	Parent=Os06t0105600-01
Chr06	irgsp1_rep	CDS	389914	390048	.	-	0	Parent=Os06t0105600-01
Chr06	irgsp1_rep	CDS	389355	389482	.	-	0	Parent=Os06t0105600-01
Chr06	irgsp1_rep	CDS	389165	389276	.	-	1	Parent=Os06t0105600-01
Chr06	irgsp1_rep	CDS	388744	389067	.	-	0	Parent=Os06t0105600-01
Chr06	irgsp1_rep	CDS	388570	388674	.	-	0	Parent=Os06t0105600-01
Chr06	irgsp1_rep	CDS	388173	388468	.	-	0	Parent=Os06t0105600-01
Chr06	irgsp1_rep	CDS	387576	388098	.	-	1	Parent=Os06t0105600-01
Chr06	irgsp1_rep	three_prime_UTR	387238	387575	.	-	.	Parent=Os06t0105600-01
Chr06	irgsp1_rep	mRNA	394583	397914	.	-	.	ID=Os06t0105700-01;Name=Os06t0105700-01;Locus_id=Os06g0105700;CGSNL Gene Symbol=UMAMIT10;CGSNL Gene Name=USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 10;Oryzabase Gene Symbol Synonym(s)=OsUMAMIT10;Oryzabase Gene Name Synonym(s)=Usually Multiple Acids Move In and out Transporter 10;Note=Protein of unknown function DUF6%2C transmembrane domain containing protein.;Transcript_evidence=AK111956 (DDBJ%2C Best hit);ORF_evidence=Q9SPP6 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=001-028-G05;Oryzabase=21378;Expression=AK111956;TENOR=Os06t0105700-01;KEGG=Os06t0105700-01
Chr06	irgsp1_rep	five_prime_UTR	397795	397914	.	-	.	Parent=Os06t0105700-01
Chr06	irgsp1_rep	five_prime_UTR	397232	397325	.	-	.	Parent=Os06t0105700-01
Chr06	irgsp1_rep	CDS	397020	397231	.	-	0	Parent=Os06t0105700-01
Chr06	irgsp1_rep	CDS	396794	396859	.	-	1	Parent=Os06t0105700-01
Chr06	irgsp1_rep	CDS	396174	396290	.	-	1	Parent=Os06t0105700-01
Chr06	irgsp1_rep	CDS	395875	396085	.	-	1	Parent=Os06t0105700-01
Chr06	irgsp1_rep	CDS	395595	395756	.	-	0	Parent=Os06t0105700-01
Chr06	irgsp1_rep	CDS	395331	395482	.	-	0	Parent=Os06t0105700-01
Chr06	irgsp1_rep	CDS	394818	394938	.	-	1	Parent=Os06t0105700-01
Chr06	irgsp1_rep	three_prime_UTR	394583	394817	.	-	.	Parent=Os06t0105700-01
Chr06	irgsp1_rep	mRNA	398679	403494	.	-	.	ID=Os06t0105800-02;Name=Os06t0105800-02;Locus_id=Os06g0105800;Note=Homeodomain-like containing protein.;Transcript_evidence=AK119640 (DDBJ%2C Best hit),AK111672 (DDBJ%2C Best hit);ORF_evidence=NP_001149442.1 (RefSeq);NIAS_FLcDNA=002-130-F07,J013156D15;Expression=AK119640;TENOR=Os06t0105800-02;KEGG=Os06t0105800-02
Chr06	irgsp1_rep	five_prime_UTR	403361	403494	.	-	.	Parent=Os06t0105800-02
Chr06	irgsp1_rep	CDS	403191	403360	.	-	0	Parent=Os06t0105800-02
Chr06	irgsp1_rep	CDS	402571	402628	.	-	1	Parent=Os06t0105800-02
Chr06	irgsp1_rep	CDS	401859	401982	.	-	0	Parent=Os06t0105800-02
Chr06	irgsp1_rep	CDS	401599	401760	.	-	2	Parent=Os06t0105800-02
Chr06	irgsp1_rep	CDS	401412	401510	.	-	2	Parent=Os06t0105800-02
Chr06	irgsp1_rep	CDS	400530	400639	.	-	2	Parent=Os06t0105800-02
Chr06	irgsp1_rep	CDS	399738	399797	.	-	0	Parent=Os06t0105800-02
Chr06	irgsp1_rep	CDS	399230	399327	.	-	0	Parent=Os06t0105800-02
Chr06	irgsp1_rep	CDS	399130	399145	.	-	1	Parent=Os06t0105800-02
Chr06	irgsp1_rep	three_prime_UTR	398679	399129	.	-	.	Parent=Os06t0105800-02
Chr06	irgsp1_rep	mRNA	403724	410270	.	+	.	ID=Os06t0105900-01;Name=Os06t0105900-01;Locus_id=Os06g0105900;Note=Conserved hypothetical protein.;Transcript_evidence=AK072638 (DDBJ%2C Best hit);ORF_evidence=A3B7K9 (UniProt);NIAS_FLcDNA=J023132J12;Expression=AK072638;TENOR=Os06t0105900-01;KEGG=Os06t0105900-01
Chr06	irgsp1_rep	five_prime_UTR	403724	403972	.	+	.	Parent=Os06t0105900-01
Chr06	irgsp1_rep	five_prime_UTR	404071	404289	.	+	.	Parent=Os06t0105900-01
Chr06	irgsp1_rep	CDS	404290	404324	.	+	0	Parent=Os06t0105900-01
Chr06	irgsp1_rep	CDS	404431	404532	.	+	1	Parent=Os06t0105900-01
Chr06	irgsp1_rep	CDS	404621	404817	.	+	1	Parent=Os06t0105900-01
Chr06	irgsp1_rep	CDS	405154	405332	.	+	2	Parent=Os06t0105900-01
Chr06	irgsp1_rep	CDS	405431	405536	.	+	0	Parent=Os06t0105900-01
Chr06	irgsp1_rep	CDS	405620	405936	.	+	2	Parent=Os06t0105900-01
Chr06	irgsp1_rep	CDS	406231	406605	.	+	0	Parent=Os06t0105900-01
Chr06	irgsp1_rep	CDS	407199	407283	.	+	0	Parent=Os06t0105900-01
Chr06	irgsp1_rep	CDS	407570	409066	.	+	2	Parent=Os06t0105900-01
Chr06	irgsp1_rep	CDS	409575	409738	.	+	2	Parent=Os06t0105900-01
Chr06	irgsp1_rep	three_prime_UTR	409739	410270	.	+	.	Parent=Os06t0105900-01
Chr06	irgsp1_rep	mRNA	408280	410150	.	+	.	ID=Os06t0105900-02;Name=Os06t0105900-02;Locus_id=Os06g0105900;Note=Similar to cDNA clone:J023132J12%2C full insert sequence.;Transcript_evidence=AK062140 (DDBJ%2C Best hit);ORF_evidence=B7EL27 (UniProt);NIAS_FLcDNA=001-045-G03;Expression=AK062140;TENOR=Os06t0105900-02;KEGG=Os06t0105900-02
Chr06	irgsp1_rep	CDS	408280	409066	.	+	0	Parent=Os06t0105900-02
Chr06	irgsp1_rep	CDS	409575	409738	.	+	2	Parent=Os06t0105900-02
Chr06	irgsp1_rep	three_prime_UTR	409739	410150	.	+	.	Parent=Os06t0105900-02
Chr06	irgsp1_rep	mRNA	410926	412986	.	+	.	ID=Os06t0106000-01;Name=Os06t0106000-01;Locus_id=Os06g0106000;Note=Cobyrinic acid a%2Cc-diamide synthase domain containing protein.;Transcript_evidence=AK059897 (DDBJ%2C Best hit);ORF_evidence=A3B7L0 (UniProt);GO=Biological Process: barrier septum site selection (GO:0000918),Biological Process: ATP catabolic process (GO:0006200),Molecular Function: ATPase activity (GO:0016887);InterPro=Cobyrinic acid a%2Cc-diamide synthase (IPR002586),Septum site-determining protein MinD (IPR010223);NIAS_FLcDNA=006-208-F07;Expression=AK059897;TENOR=Os06t0106000-01;KEGG=Os06t0106000-01
Chr06	irgsp1_rep	five_prime_UTR	410926	411060	.	+	.	Parent=Os06t0106000-01
Chr06	irgsp1_rep	CDS	411061	411544	.	+	0	Parent=Os06t0106000-01
Chr06	irgsp1_rep	CDS	412401	412837	.	+	2	Parent=Os06t0106000-01
Chr06	irgsp1_rep	three_prime_UTR	412838	412986	.	+	.	Parent=Os06t0106000-01
Chr06	irgsp1_rep	mRNA	411036	413035	.	+	.	ID=Os06t0106000-02;Name=Os06t0106000-02;Locus_id=Os06g0106000;Note=Cobyrinic acid a%2Cc-diamide synthase domain containing protein.;Transcript_evidence=AK105653 (DDBJ%2C Best hit);ORF_evidence=Q45RR7 (UniProt);GO=Biological Process: barrier septum site selection (GO:0000918),Biological Process: ATP catabolic process (GO:0006200),Molecular Function: ATPase activity (GO:0016887);InterPro=Cobyrinic acid a%2Cc-diamide synthase (IPR002586),Septum site-determining protein MinD (IPR010223);NIAS_FLcDNA=001-200-G04;Expression=AK105653;TENOR=Os06t0106000-02;KEGG=Os06t0106000-02
Chr06	irgsp1_rep	five_prime_UTR	411036	411060	.	+	.	Parent=Os06t0106000-02
Chr06	irgsp1_rep	CDS	411061	411544	.	+	0	Parent=Os06t0106000-02
Chr06	irgsp1_rep	CDS	412401	412837	.	+	2	Parent=Os06t0106000-02
Chr06	irgsp1_rep	three_prime_UTR	412838	413035	.	+	.	Parent=Os06t0106000-02
Chr06	irgsp1_rep	mRNA	413321	416043	.	-	.	ID=Os06t0106100-01;Name=Os06t0106100-01;Locus_id=Os06g0106100;Note=Cwf15/Cwc15 cell cycle control protein family protein.;Transcript_evidence=AK111784 (DDBJ%2C Best hit);ORF_evidence=B6SU82 (UniProt);GO=Biological Process: nuclear mRNA splicing%2C via spliceosome (GO:0000398),Cellular Component: spliceosomal complex (GO:0005681);InterPro=Cwf15/Cwc15 cell cycle control protein (IPR006973);NIAS_FLcDNA=J023086E16;Expression=AK111784;TENOR=Os06t0106100-01;KEGG=Os06t0106100-01
Chr06	irgsp1_rep	five_prime_UTR	415943	416043	.	-	.	Parent=Os06t0106100-01
Chr06	irgsp1_rep	CDS	415812	415942	.	-	0	Parent=Os06t0106100-01
Chr06	irgsp1_rep	CDS	415117	415223	.	-	1	Parent=Os06t0106100-01
Chr06	irgsp1_rep	CDS	414902	414943	.	-	2	Parent=Os06t0106100-01
Chr06	irgsp1_rep	CDS	414733	414820	.	-	2	Parent=Os06t0106100-01
Chr06	irgsp1_rep	CDS	414104	414197	.	-	1	Parent=Os06t0106100-01
Chr06	irgsp1_rep	CDS	413891	413997	.	-	0	Parent=Os06t0106100-01
Chr06	irgsp1_rep	CDS	413675	413798	.	-	1	Parent=Os06t0106100-01
Chr06	irgsp1_rep	three_prime_UTR	413321	413674	.	-	.	Parent=Os06t0106100-01
Chr06	irgsp1_rep	mRNA	414121	416035	.	-	.	ID=Os06t0106100-02;Name=Os06t0106100-02;Locus_id=Os06g0106100;Note=Similar to pre-mRNA-splicing factor cwc15.;Transcript_evidence=AK112060 (DDBJ%2C Best hit);ORF_evidence=B6SU82 (UniProt);GO=Biological Process: nuclear mRNA splicing%2C via spliceosome (GO:0000398),Cellular Component: spliceosomal complex (GO:0005681);InterPro=Cwf15/Cwc15 cell cycle control protein (IPR006973);NIAS_FLcDNA=001-112-F11;TENOR=Os06t0106100-02
Chr06	irgsp1_rep	five_prime_UTR	415943	416035	.	-	.	Parent=Os06t0106100-02
Chr06	irgsp1_rep	CDS	415812	415942	.	-	0	Parent=Os06t0106100-02
Chr06	irgsp1_rep	CDS	415117	415223	.	-	1	Parent=Os06t0106100-02
Chr06	irgsp1_rep	CDS	414902	414943	.	-	2	Parent=Os06t0106100-02
Chr06	irgsp1_rep	CDS	414733	414820	.	-	2	Parent=Os06t0106100-02
Chr06	irgsp1_rep	CDS	414121	414197	.	-	1	Parent=Os06t0106100-02
Chr06	irgsp1_rep	mRNA	420780	425167	.	+	.	ID=Os06t0106500-01;Name=Os06t0106500-01;Locus_id=Os06g0106500;Note=Conserved hypothetical protein.;Transcript_evidence=AK121094 (DDBJ%2C Best hit);ORF_evidence=B8B1I2 (UniProt);NIAS_FLcDNA=J023067B17;TENOR=Os06t0106500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	420780	421298	.	+	.	Parent=Os06t0106500-01
Chr06	irgsp1_rep	CDS	421299	422094	.	+	0	Parent=Os06t0106500-01
Chr06	irgsp1_rep	CDS	423729	423784	.	+	2	Parent=Os06t0106500-01
Chr06	irgsp1_rep	three_prime_UTR	423785	424005	.	+	.	Parent=Os06t0106500-01
Chr06	irgsp1_rep	three_prime_UTR	424109	425167	.	+	.	Parent=Os06t0106500-01
Chr06	irgsp1_rep	mRNA	439064	441551	.	-	.	ID=Os06t0106800-01;Name=Os06t0106800-01;Locus_id=Os06g0106800;Note=Similar to glycoside hydrolase%2C family 28.;Transcript_evidence=AK122178 (DDBJ%2C Best hit);ORF_evidence=NP_001151164.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=J033148N22;TENOR=Os06t0106800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	441401	441551	.	-	.	Parent=Os06t0106800-01
Chr06	irgsp1_rep	CDS	441356	441400	.	-	0	Parent=Os06t0106800-01
Chr06	irgsp1_rep	CDS	439296	440708	.	-	0	Parent=Os06t0106800-01
Chr06	irgsp1_rep	three_prime_UTR	439064	439295	.	-	.	Parent=Os06t0106800-01
Chr06	irgsp1_rep	mRNA	439066	441465	.	-	.	ID=Os06t0106800-02;Name=Os06t0106800-02;Locus_id=Os06g0106800;Note=Similar to glycoside hydrolase%2C family 28.;Transcript_evidence=AK073364 (DDBJ%2C Best hit),AK105650 (DDBJ%2C Best hit),AK105782 (DDBJ%2C Best hit),AK105911 (DDBJ%2C Best hit);ORF_evidence=NP_001151164.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=J033029B15,001-200-F11,001-202-G05,001-204-G11;TENOR=Os06t0106800-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	441401	441465	.	-	.	Parent=Os06t0106800-02
Chr06	irgsp1_rep	CDS	441356	441400	.	-	0	Parent=Os06t0106800-02
Chr06	irgsp1_rep	CDS	439296	440708	.	-	0	Parent=Os06t0106800-02
Chr06	irgsp1_rep	three_prime_UTR	439066	439295	.	-	.	Parent=Os06t0106800-02
Chr06	irgsp1_rep	mRNA	445011	447784	.	-	.	ID=Os06t0106900-01;Name=Os06t0106900-01;Locus_id=Os06g0106900;Note=Conserved hypothetical protein.;Transcript_evidence=AK067326 (DDBJ%2C Best hit);ORF_evidence=A2Y8D1 (UniProt);NIAS_FLcDNA=J013102I20;Expression=AK067326;TENOR=Os06t0106900-01;KEGG=Os06t0106900-01
Chr06	irgsp1_rep	five_prime_UTR	447572	447784	.	-	.	Parent=Os06t0106900-01
Chr06	irgsp1_rep	five_prime_UTR	446049	446175	.	-	.	Parent=Os06t0106900-01
Chr06	irgsp1_rep	five_prime_UTR	445914	445949	.	-	.	Parent=Os06t0106900-01
Chr06	irgsp1_rep	CDS	445266	445913	.	-	0	Parent=Os06t0106900-01
Chr06	irgsp1_rep	three_prime_UTR	445011	445265	.	-	.	Parent=Os06t0106900-01
Chr06	irgsp1_rep	mRNA	450964	453729	.	+	.	ID=Os06t0107000-01;Name=Os06t0107000-01;Locus_id=Os06g0107000;Oryzabase Gene Symbol Synonym(s)=OsSTA163;Note=Domain of unknown function DUF862%2C eukaryotic domain containing protein.;Transcript_evidence=AK069627 (DDBJ%2C Best hit);ORF_evidence=B9FR41 (UniProt);InterPro=Domain of unknown function DUF862%2C eukaryotic (IPR008580);NIAS_FLcDNA=J023024I03;Oryzabase=19447;TENOR=Os06t0107000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	450964	451131	.	+	0	Parent=Os06t0107000-01
Chr06	irgsp1_rep	CDS	451735	451996	.	+	0	Parent=Os06t0107000-01
Chr06	irgsp1_rep	CDS	452109	452176	.	+	2	Parent=Os06t0107000-01
Chr06	irgsp1_rep	CDS	452850	453164	.	+	0	Parent=Os06t0107000-01
Chr06	irgsp1_rep	three_prime_UTR	453165	453729	.	+	.	Parent=Os06t0107000-01
Chr06	irgsp1_rep	mRNA	454843	457197	.	+	.	ID=Os06t0107100-01;Name=Os06t0107100-01;Locus_id=Os06g0107100;Note=Protein of unknown function DUF819 family protein.;Transcript_evidence=AK066804 (DDBJ%2C Best hit);ORF_evidence=Q5VS59 (UniProt);InterPro=Protein of unknown function DUF819 (IPR008537);NIAS_FLcDNA=J013078I02;Expression=AK066804;TENOR=Os06t0107100-01;KEGG=Os06t0107100-01
Chr06	irgsp1_rep	five_prime_UTR	454843	454921	.	+	.	Parent=Os06t0107100-01
Chr06	irgsp1_rep	CDS	454922	455178	.	+	0	Parent=Os06t0107100-01
Chr06	irgsp1_rep	CDS	455264	455307	.	+	1	Parent=Os06t0107100-01
Chr06	irgsp1_rep	CDS	455446	455493	.	+	2	Parent=Os06t0107100-01
Chr06	irgsp1_rep	CDS	455951	456061	.	+	2	Parent=Os06t0107100-01
Chr06	irgsp1_rep	CDS	456199	456351	.	+	2	Parent=Os06t0107100-01
Chr06	irgsp1_rep	CDS	456439	457013	.	+	2	Parent=Os06t0107100-01
Chr06	irgsp1_rep	three_prime_UTR	457014	457197	.	+	.	Parent=Os06t0107100-01
Chr06	irgsp1_rep	mRNA	454886	457220	.	+	.	ID=Os06t0107100-02;Name=Os06t0107100-02;Locus_id=Os06g0107100;Note=Similar to predicted protein.;Transcript_evidence=AK068804 (DDBJ%2C Best hit),AK098965 (DDBJ%2C Best hit);ORF_evidence=XP_002436337.1 (RefSeq);InterPro=Protein of unknown function DUF819 (IPR008537);NIAS_FLcDNA=J013161L13,J013075G08;TENOR=Os06t0107100-02
Chr06	irgsp1_rep	five_prime_UTR	454886	454921	.	+	.	Parent=Os06t0107100-02
Chr06	irgsp1_rep	CDS	454922	455178	.	+	0	Parent=Os06t0107100-02
Chr06	irgsp1_rep	CDS	455264	455493	.	+	1	Parent=Os06t0107100-02
Chr06	irgsp1_rep	CDS	455951	456061	.	+	2	Parent=Os06t0107100-02
Chr06	irgsp1_rep	CDS	456199	456351	.	+	2	Parent=Os06t0107100-02
Chr06	irgsp1_rep	CDS	456439	457013	.	+	2	Parent=Os06t0107100-02
Chr06	irgsp1_rep	three_prime_UTR	457014	457220	.	+	.	Parent=Os06t0107100-02
Chr06	irgsp1_rep	mRNA	457235	457810	.	-	.	ID=Os06t0107266-00;Name=Os06t0107266-00;Locus_id=Os06g0107266;Note=Protein of unknown function DUF3615 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q9SNI6 (UniProt);InterPro=Protein of unknown function DUF3615 (IPR022059);TENOR=Os06t0107266-00
Chr06	irgsp1_rep	CDS	457235	457810	.	-	0	Parent=Os06t0107266-00
Chr06	irgsp1_rep	mRNA	468292	468418	.	-	.	ID=Os06t0107432-00;Name=Os06t0107432-00;Locus_id=Os06g0107432;Note=Non-protein coding transcript.;Transcript_evidence=AF438768 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0107432-00
Chr06	irgsp1_rep	exon	468292	468418	.	-	.	Parent=Os06t0107432-00
Chr06	irgsp1_rep	mRNA	477098	479156	.	+	.	ID=Os06t0107600-01;Name=Os06t0107600-01;Locus_id=Os06g0107600;Note=Similar to nodulin protein.;Transcript_evidence=AK100838 (DDBJ%2C Best hit);ORF_evidence=NP_001151682.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=J023123E20;TENOR=Os06t0107600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	477098	477202	.	+	.	Parent=Os06t0107600-01
Chr06	irgsp1_rep	CDS	477203	477387	.	+	0	Parent=Os06t0107600-01
Chr06	irgsp1_rep	CDS	477480	477542	.	+	1	Parent=Os06t0107600-01
Chr06	irgsp1_rep	CDS	477683	477799	.	+	1	Parent=Os06t0107600-01
Chr06	irgsp1_rep	CDS	477919	478327	.	+	1	Parent=Os06t0107600-01
Chr06	irgsp1_rep	CDS	478447	478598	.	+	0	Parent=Os06t0107600-01
Chr06	irgsp1_rep	CDS	478705	478870	.	+	1	Parent=Os06t0107600-01
Chr06	irgsp1_rep	three_prime_UTR	478871	479156	.	+	.	Parent=Os06t0107600-01
Chr06	irgsp1_rep	mRNA	477100	479156	.	+	.	ID=Os06t0107600-02;Name=Os06t0107600-02;Locus_id=Os06g0107600;Note=Hypothetical conserved gene.;Transcript_evidence=AK107585 (DDBJ%2C Best hit);ORF_evidence=Q9LX06 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=002-130-E09;Expression=AK107585;TENOR=Os06t0107600-02;KEGG=Os06t0107600-02
Chr06	irgsp1_rep	five_prime_UTR	477100	477202	.	+	.	Parent=Os06t0107600-02
Chr06	irgsp1_rep	CDS	477203	477387	.	+	0	Parent=Os06t0107600-02
Chr06	irgsp1_rep	CDS	477480	477542	.	+	1	Parent=Os06t0107600-02
Chr06	irgsp1_rep	CDS	477683	477799	.	+	1	Parent=Os06t0107600-02
Chr06	irgsp1_rep	CDS	477924	478327	.	+	1	Parent=Os06t0107600-02
Chr06	irgsp1_rep	CDS	478447	478562	.	+	2	Parent=Os06t0107600-02
Chr06	irgsp1_rep	three_prime_UTR	478563	478598	.	+	.	Parent=Os06t0107600-02
Chr06	irgsp1_rep	three_prime_UTR	478705	479156	.	+	.	Parent=Os06t0107600-02
Chr06	irgsp1_rep	mRNA	477205	478876	.	-	.	ID=Os06t0107650-00;Name=Os06t0107650-00;Locus_id=Os06g0107650;Note=Hypothetical protein.;Transcript_evidence=tplb0040p04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0107650-00
Chr06	irgsp1_rep	five_prime_UTR	478697	478876	.	-	.	Parent=Os06t0107650-00
Chr06	irgsp1_rep	five_prime_UTR	478447	478590	.	-	.	Parent=Os06t0107650-00
Chr06	irgsp1_rep	five_prime_UTR	478196	478327	.	-	.	Parent=Os06t0107650-00
Chr06	irgsp1_rep	CDS	477980	478195	.	-	0	Parent=Os06t0107650-00
Chr06	irgsp1_rep	three_prime_UTR	477909	477979	.	-	.	Parent=Os06t0107650-00
Chr06	irgsp1_rep	three_prime_UTR	477654	477791	.	-	.	Parent=Os06t0107650-00
Chr06	irgsp1_rep	three_prime_UTR	477205	477423	.	-	.	Parent=Os06t0107650-00
Chr06	irgsp1_rep	mRNA	479261	481572	.	-	.	ID=Os06t0107700-01;Name=Os06t0107700-01;Locus_id=Os06g0107700;RAP-DB Gene Symbol Synonym(s)=OsLFNR2%2C LFNR2%2C FNR;RAP-DB Gene Name Synonym(s)=leaf-type ferredoxin-NADP+-oxidoreductase 2%2C leaf-type FNR 2%2C Fd NADP+ oxidoreductase 2%2C LeafFerredoxin-NADP+ Reductase%2C leaf FNR;Oryzabase Gene Symbol Synonym(s)=OsLFNR2%2C LFNR2%2C FNR%2C LFNR1%2C Os-LFNR1%2C OsLFNR1%2C PetH-1;Oryzabase Gene Name Synonym(s)=leaf-type ferredoxin-NADP+-oxidoreductase 2%2C leaf-type FNR 2%2C Fd NADP+ oxidoreductase 2%2C Leaf Ferredoxin-NADP+ Reductase%2C leaf FNR;Note=Leaf-type ferredoxin-NADP+-oxidoreductase%2C Regulation of electron partitioning in the chloroplast;Transcript_evidence=D17790 (Kinmaze),AK065063,AK104865;ORF_evidence=P41344;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Ferredoxin--NADP reductase (IPR015701),Riboflavin synthase-like beta-barrel (IPR017938),Ferredoxin reductase-type FAD-binding domain (IPR017927),Oxidoreductase%2C FAD-binding domain (IPR008333),Oxidoreductase FAD/NAD(P)-binding (IPR001433),Flavoprotein pyridine nucleotide cytoChrome reductase (IPR001709);NIAS_FLcDNA=J013001J18, 001-043-G11;Manual Curation=April 21%2C 2016;Literature_PMID=21734114;Oryzabase=9585;Expression=AK104865;TENOR=Os06t0107700-01;KEGG=Os06t0107700-01 (EC:1.18.1.2)
Chr06	irgsp1_rep	five_prime_UTR	481523	481572	.	-	.	Parent=Os06t0107700-01
Chr06	irgsp1_rep	CDS	481183	481522	.	-	0	Parent=Os06t0107700-01
Chr06	irgsp1_rep	CDS	480970	481103	.	-	2	Parent=Os06t0107700-01
Chr06	irgsp1_rep	CDS	480787	480865	.	-	0	Parent=Os06t0107700-01
Chr06	irgsp1_rep	CDS	480262	480353	.	-	2	Parent=Os06t0107700-01
Chr06	irgsp1_rep	CDS	480101	480178	.	-	0	Parent=Os06t0107700-01
Chr06	irgsp1_rep	CDS	479915	479977	.	-	0	Parent=Os06t0107700-01
Chr06	irgsp1_rep	CDS	479586	479820	.	-	0	Parent=Os06t0107700-01
Chr06	irgsp1_rep	CDS	479423	479490	.	-	2	Parent=Os06t0107700-01
Chr06	irgsp1_rep	three_prime_UTR	479261	479422	.	-	.	Parent=Os06t0107700-01
Chr06	irgsp1_rep	mRNA	479422	481552	.	+	.	ID=Os06t0107750-00;Name=Os06t0107750-00;Locus_id=Os06g0107750;Note=Hypothetical protein.;Transcript_evidence=tplb0050d18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0107750-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	479422	479482	.	+	.	Parent=Os06t0107750-00
Chr06	irgsp1_rep	five_prime_UTR	479577	479849	.	+	.	Parent=Os06t0107750-00
Chr06	irgsp1_rep	five_prime_UTR	480072	480170	.	+	.	Parent=Os06t0107750-00
Chr06	irgsp1_rep	five_prime_UTR	480257	480348	.	+	.	Parent=Os06t0107750-00
Chr06	irgsp1_rep	five_prime_UTR	480777	480858	.	+	.	Parent=Os06t0107750-00
Chr06	irgsp1_rep	five_prime_UTR	480960	481089	.	+	.	Parent=Os06t0107750-00
Chr06	irgsp1_rep	five_prime_UTR	481175	481309	.	+	.	Parent=Os06t0107750-00
Chr06	irgsp1_rep	CDS	481310	481552	.	+	0	Parent=Os06t0107750-00
Chr06	irgsp1_rep	mRNA	484346	485308	.	-	.	ID=Os06t0107800-01;Name=Os06t0107800-01;Locus_id=Os06g0107800;CGSNL Gene Symbol=BPH29;CGSNL Gene Name=BROWN PLANTHOPPER RESISTANCE 29;Oryzabase Gene Symbol Synonym(s)=Bph29;Note=Similar to RAV-like protein.;Transcript_evidence=AK062921 (DDBJ%2C Best hit);ORF_evidence=Q5VS55 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=001-108-H07;Oryzabase=21589;Expression=AK062921;TENOR=Os06t0107800-01;KEGG=Os06t0107800-01
Chr06	irgsp1_rep	five_prime_UTR	485248	485308	.	-	.	Parent=Os06t0107800-01
Chr06	irgsp1_rep	CDS	485242	485247	.	-	0	Parent=Os06t0107800-01
Chr06	irgsp1_rep	CDS	484709	485065	.	-	0	Parent=Os06t0107800-01
Chr06	irgsp1_rep	three_prime_UTR	484346	484708	.	-	.	Parent=Os06t0107800-01
Chr06	irgsp1_rep	mRNA	484709	485308	.	-	.	ID=Os06t0107800-02;Name=Os06t0107800-02;Locus_id=Os06g0107800;RAP-DB Gene Symbol Synonym(s)=BPH29;CGSNL Gene Symbol=BPH29;CGSNL Gene Name=BROWN PLANTHOPPER RESISTANCE 29;Oryzabase Gene Symbol Synonym(s)=Bph29;Note=B3 DNA-binding domain containing protein%2C Insect resistance;Transcript_evidence=KC019172 (TN1%2C indica);ORF_evidence=Q5VS55,A0A0K0K514;GO=Molecular Function: DNA binding (GO:0003677);InterPro=DNA-binding pseudobarrel domain (IPR015300),B3 DNA binding domain (IPR003340);Manual Curation=May 30%2C 2016;Literature_PMID=26136269;Oryzabase=21589
Chr06	irgsp1_rep	CDS	484709	485308	.	-	0	Parent=Os06t0107800-02
Chr06	irgsp1_rep	mRNA	494850	511404	.	+	.	ID=Os06t0108500-01;Name=Os06t0108500-01;Locus_id=Os06g0108500;Note=Similar to MIKC-type MADS-box transcription factor AGL1.;Transcript_evidence=AK241055 (DDBJ%2C Best hit);ORF_evidence=B2CZ80 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box (IPR002100),Transcription factor%2C K-box (IPR002487);NIAS_FLcDNA=J065063N18;TENOR=Os06t0108500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	494850	494884	.	+	.	Parent=Os06t0108500-01
Chr06	irgsp1_rep	five_prime_UTR	494986	495066	.	+	.	Parent=Os06t0108500-01
Chr06	irgsp1_rep	CDS	495067	495278	.	+	0	Parent=Os06t0108500-01
Chr06	irgsp1_rep	CDS	509901	509976	.	+	1	Parent=Os06t0108500-01
Chr06	irgsp1_rep	CDS	510090	510151	.	+	0	Parent=Os06t0108500-01
Chr06	irgsp1_rep	CDS	510283	510380	.	+	1	Parent=Os06t0108500-01
Chr06	irgsp1_rep	CDS	510498	510541	.	+	2	Parent=Os06t0108500-01
Chr06	irgsp1_rep	CDS	510790	510831	.	+	0	Parent=Os06t0108500-01
Chr06	irgsp1_rep	CDS	511042	511149	.	+	0	Parent=Os06t0108500-01
Chr06	irgsp1_rep	three_prime_UTR	511150	511404	.	+	.	Parent=Os06t0108500-01
Chr06	irgsp1_rep	mRNA	511889	512791	.	-	.	ID=Os06t0108600-00;Name=Os06t0108600-00;Locus_id=Os06g0108600;CGSNL Gene Symbol=EXPA17;CGSNL Gene Name=ALPHA-EXPANSIN 17;Oryzabase Gene Symbol Synonym(s)=OsEXPA17%2C OsEXP17%2C osaEXPa1.31;Oryzabase Gene Name Synonym(s)=expansin A17;Note=Similar to Expansin-A17.;Transcript_evidence=DQ061058 (DDBJ%2C Best hit);ORF_evidence=Q4PR49 (UniProt);GO=Biological Process: plant-type cell wall organization (GO:0009664),Cellular Component: extracellular region (GO:0005576);InterPro=Expansin (IPR002963),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);Oryzabase=9380;TENOR=Os06t0108600-00
Chr06	irgsp1_rep	five_prime_UTR	512790	512791	.	-	.	Parent=Os06t0108600-00
Chr06	irgsp1_rep	CDS	512594	512789	.	-	0	Parent=Os06t0108600-00
Chr06	irgsp1_rep	CDS	511889	512498	.	-	2	Parent=Os06t0108600-00
Chr06	irgsp1_rep	mRNA	514337	514943	.	-	.	ID=Os06t0108751-00;Name=Os06t0108751-00;Locus_id=Os06g0108751;Note=Conserved hypothetical protein.;Transcript_evidence=AK062313 (DDBJ%2C Secondary hit);ORF_evidence=NP_001175806.1 (RefSeq);TENOR=Os06t0108751-00
Chr06	irgsp1_rep	five_prime_UTR	514905	514943	.	-	.	Parent=Os06t0108751-00
Chr06	irgsp1_rep	CDS	514563	514904	.	-	0	Parent=Os06t0108751-00
Chr06	irgsp1_rep	three_prime_UTR	514337	514562	.	-	.	Parent=Os06t0108751-00
Chr06	irgsp1_rep	mRNA	523053	527871	.	+	.	ID=Os06t0108900-01;Name=Os06t0108900-01;Locus_id=Os06g0108900;Oryzabase Gene Symbol Synonym(s)=BEL1%2C OsBEL%2C BEL;Oryzabase Gene Name Synonym(s)=bell-like homeodomain protein%2C BELL1 homolog;Note=Similar to H0613A10.3 protein.;Transcript_evidence=AK111490 (DDBJ%2C Best hit);ORF_evidence=Q25A58 (UniProt);NIAS_FLcDNA=J013000A19;Oryzabase=19689;TENOR=Os06t0108900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	523053	525249	.	+	.	Parent=Os06t0108900-01
Chr06	irgsp1_rep	CDS	525250	525666	.	+	0	Parent=Os06t0108900-01
Chr06	irgsp1_rep	three_prime_UTR	525667	527871	.	+	.	Parent=Os06t0108900-01
Chr06	irgsp1_rep	mRNA	523060	530057	.	+	.	ID=Os06t0108900-02;Name=Os06t0108900-02;Locus_id=Os06g0108900;Oryzabase Gene Symbol Synonym(s)=BEL1%2C OsBEL%2C BEL;Oryzabase Gene Name Synonym(s)=bell-like homeodomain protein%2C BELL1 homolog;Note=Homeodomain-related domain containing protein.;Transcript_evidence=AK101029 (DDBJ%2C Best hit);ORF_evidence=B2ZTC6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),POX (IPR006563),Homeobox KN domain (IPR008422),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);NIAS_FLcDNA=J023150H24;Oryzabase=19689;Expression=AK101029;TENOR=Os06t0108900-02;KEGG=Os06t0108900-02
Chr06	irgsp1_rep	five_prime_UTR	523060	523203	.	+	.	Parent=Os06t0108900-02
Chr06	irgsp1_rep	CDS	523204	523755	.	+	0	Parent=Os06t0108900-02
Chr06	irgsp1_rep	CDS	528449	528855	.	+	0	Parent=Os06t0108900-02
Chr06	irgsp1_rep	CDS	528956	529016	.	+	1	Parent=Os06t0108900-02
Chr06	irgsp1_rep	CDS	529112	529684	.	+	0	Parent=Os06t0108900-02
Chr06	irgsp1_rep	three_prime_UTR	529685	530057	.	+	.	Parent=Os06t0108900-02
Chr06	irgsp1_rep	mRNA	530667	531989	.	-	.	ID=Os06t0109000-00;Name=Os06t0109000-00;Locus_id=Os06g0109000;Note=Phosphoglycerate mutase domain containing protein.;Transcript_evidence=CT836294 (DDBJ%2C Best hit);ORF_evidence=NP_001150740.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Phosphoglycerate/bisphosphoglycerate mutase%2C active site (IPR001345),Histidine phosphatase superfamily%2C clade-1 (IPR013078);TENOR=Os06t0109000-00;KEGG=Os06t0109000-00
Chr06	irgsp1_rep	five_prime_UTR	531924	531989	.	-	.	Parent=Os06t0109000-00
Chr06	irgsp1_rep	CDS	530832	531923	.	-	0	Parent=Os06t0109000-00
Chr06	irgsp1_rep	three_prime_UTR	530667	530831	.	-	.	Parent=Os06t0109000-00
Chr06	irgsp1_rep	mRNA	534584	535745	.	-	.	ID=Os06t0109100-00;Name=Os06t0109100-00;Locus_id=Os06g0109100;Note=Hypothetical conserved gene.;Transcript_evidence=CT836185 (DDBJ%2C Best hit);ORF_evidence=NP_001174563.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);TENOR=Os06t0109100-00;KEGG=Os06t0109100-00
Chr06	irgsp1_rep	five_prime_UTR	535623	535745	.	-	.	Parent=Os06t0109100-00
Chr06	irgsp1_rep	CDS	535137	535622	.	-	0	Parent=Os06t0109100-00
Chr06	irgsp1_rep	three_prime_UTR	534584	535136	.	-	.	Parent=Os06t0109100-00
Chr06	irgsp1_rep	mRNA	543057	545777	.	+	.	ID=Os06t0109200-01;Name=Os06t0109200-01;Locus_id=Os06g0109200;Note=Protein of unknown function DUF6%2C transmembrane domain containing protein.;Transcript_evidence=AK060278 (DDBJ%2C Best hit),AK099078 (DDBJ%2C Best hit);ORF_evidence=NP_001151682.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=001-006-A04,J013170B11;TENOR=Os06t0109200-01
Chr06	irgsp1_rep	five_prime_UTR	543057	543099	.	+	.	Parent=Os06t0109200-01
Chr06	irgsp1_rep	CDS	543100	543290	.	+	0	Parent=Os06t0109200-01
Chr06	irgsp1_rep	CDS	543390	543452	.	+	1	Parent=Os06t0109200-01
Chr06	irgsp1_rep	CDS	543558	543674	.	+	1	Parent=Os06t0109200-01
Chr06	irgsp1_rep	CDS	543762	544167	.	+	1	Parent=Os06t0109200-01
Chr06	irgsp1_rep	CDS	544838	544989	.	+	0	Parent=Os06t0109200-01
Chr06	irgsp1_rep	CDS	545312	545459	.	+	1	Parent=Os06t0109200-01
Chr06	irgsp1_rep	three_prime_UTR	545460	545777	.	+	.	Parent=Os06t0109200-01
Chr06	irgsp1_rep	mRNA	546504	550375	.	+	.	ID=Os06t0109300-01;Name=Os06t0109300-01;Locus_id=Os06g0109300;Note=Protein of unknown function DUF6%2C transmembrane domain containing protein.;Transcript_evidence=AK059047 (DDBJ%2C Best hit);ORF_evidence=NP_001151682.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=001-021-D10;Expression=AK059047;TENOR=Os06t0109300-01;KEGG=Os06t0109300-01
Chr06	irgsp1_rep	five_prime_UTR	546504	546565	.	+	.	Parent=Os06t0109300-01
Chr06	irgsp1_rep	CDS	546566	546756	.	+	0	Parent=Os06t0109300-01
Chr06	irgsp1_rep	CDS	546846	546908	.	+	1	Parent=Os06t0109300-01
Chr06	irgsp1_rep	CDS	547009	547125	.	+	1	Parent=Os06t0109300-01
Chr06	irgsp1_rep	CDS	547682	548096	.	+	1	Parent=Os06t0109300-01
Chr06	irgsp1_rep	CDS	549697	549848	.	+	0	Parent=Os06t0109300-01
Chr06	irgsp1_rep	CDS	549959	550103	.	+	1	Parent=Os06t0109300-01
Chr06	irgsp1_rep	three_prime_UTR	550104	550375	.	+	.	Parent=Os06t0109300-01
Chr06	irgsp1_rep	mRNA	550937	555650	.	+	.	ID=Os06t0109400-01;Name=Os06t0109400-01;Locus_id=Os06g0109400;Note=ATPase%2C AAA-type%2C core domain containing protein.;Transcript_evidence=AK101114 (DDBJ%2C Best hit);ORF_evidence=NP_186810.2 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);NIAS_FLcDNA=J033025G10;Expression=AK101114;TENOR=Os06t0109400-01;KEGG=Os06t0109400-01
Chr06	irgsp1_rep	five_prime_UTR	550937	550970	.	+	.	Parent=Os06t0109400-01
Chr06	irgsp1_rep	CDS	550971	551769	.	+	0	Parent=Os06t0109400-01
Chr06	irgsp1_rep	CDS	552576	553189	.	+	2	Parent=Os06t0109400-01
Chr06	irgsp1_rep	CDS	553391	553543	.	+	0	Parent=Os06t0109400-01
Chr06	irgsp1_rep	CDS	553768	553884	.	+	0	Parent=Os06t0109400-01
Chr06	irgsp1_rep	CDS	553971	554075	.	+	0	Parent=Os06t0109400-01
Chr06	irgsp1_rep	CDS	554268	554333	.	+	0	Parent=Os06t0109400-01
Chr06	irgsp1_rep	CDS	554429	554493	.	+	0	Parent=Os06t0109400-01
Chr06	irgsp1_rep	CDS	554576	554777	.	+	1	Parent=Os06t0109400-01
Chr06	irgsp1_rep	CDS	555025	555168	.	+	0	Parent=Os06t0109400-01
Chr06	irgsp1_rep	CDS	555292	555339	.	+	0	Parent=Os06t0109400-01
Chr06	irgsp1_rep	three_prime_UTR	555340	555650	.	+	.	Parent=Os06t0109400-01
Chr06	irgsp1_rep	mRNA	555518	556419	.	-	.	ID=Os06t0109500-01;Name=Os06t0109500-01;Locus_id=Os06g0109500;Note=Similar to Beta-phosphoglucomutase.;Transcript_evidence=AK289261 (DDBJ%2C Best hit);ORF_evidence=A9UKL7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity (GO:0016787);InterPro=Haloacid dehalogenase-like hydrolase (IPR005834),HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 (IPR006402),HAD-like domain (IPR023214);NIAS_FLcDNA=J100086F23;TENOR=Os06t0109500-01;KEGG=Os06t0109500-01
Chr06	irgsp1_rep	five_prime_UTR	556407	556419	.	-	.	Parent=Os06t0109500-01
Chr06	irgsp1_rep	CDS	555636	556406	.	-	0	Parent=Os06t0109500-01
Chr06	irgsp1_rep	three_prime_UTR	555518	555635	.	-	.	Parent=Os06t0109500-01
Chr06	irgsp1_rep	mRNA	564534	567658	.	+	.	ID=Os06t0109600-01;Name=Os06t0109600-01;Locus_id=Os06g0109600;Note=Similar to Uridylate kinase (EC 2.7.4.-) (UK) (Uridine monophosphate kinase) (UMP kinase) (UMP/CMP kinase).;Transcript_evidence=AK066989 (DDBJ%2C Best hit);ORF_evidence=NP_001148127.1 (RefSeq);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Biological Process: nucleotide phosphorylation (GO:0046939),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphotransferase activity%2C phosphate group as acceptor (GO:0016776),Molecular Function: nucleotide kinase activity (GO:0019201),Molecular Function: nucleobase-containing compound kinase activity (GO:0019205);InterPro=Adenylate kinase (IPR000850),UMP-CMP kinase (IPR006266);NIAS_FLcDNA=J013092J19;Expression=AK066989;TENOR=Os06t0109600-01;KEGG=Os06t0109600-01 (EC:2.7.4.14)
Chr06	irgsp1_rep	five_prime_UTR	564534	564681	.	+	.	Parent=Os06t0109600-01
Chr06	irgsp1_rep	five_prime_UTR	565300	565343	.	+	.	Parent=Os06t0109600-01
Chr06	irgsp1_rep	CDS	565344	565361	.	+	0	Parent=Os06t0109600-01
Chr06	irgsp1_rep	CDS	565700	565757	.	+	0	Parent=Os06t0109600-01
Chr06	irgsp1_rep	CDS	565891	566008	.	+	2	Parent=Os06t0109600-01
Chr06	irgsp1_rep	CDS	566129	566285	.	+	1	Parent=Os06t0109600-01
Chr06	irgsp1_rep	CDS	566446	566523	.	+	0	Parent=Os06t0109600-01
Chr06	irgsp1_rep	CDS	566607	566717	.	+	0	Parent=Os06t0109600-01
Chr06	irgsp1_rep	CDS	566883	566954	.	+	0	Parent=Os06t0109600-01
Chr06	irgsp1_rep	CDS	567057	567141	.	+	0	Parent=Os06t0109600-01
Chr06	irgsp1_rep	CDS	567308	567342	.	+	2	Parent=Os06t0109600-01
Chr06	irgsp1_rep	three_prime_UTR	567343	567658	.	+	.	Parent=Os06t0109600-01
Chr06	irgsp1_rep	mRNA	572229	574483	.	+	.	ID=Os06t0109801-00;Name=Os06t0109801-00;Locus_id=Os06g0109801;Note=Similar to cDNA clone:002-149-F01%2C full insert sequence.;Transcript_evidence=AK107016 (DDBJ%2C Secondary hit);ORF_evidence=Q336R1 (UniProt);Expression=AK107016;TENOR=Os06t0109801-00;KEGG=Os06t0109801-00
Chr06	irgsp1_rep	five_prime_UTR	572229	572536	.	+	.	Parent=Os06t0109801-00
Chr06	irgsp1_rep	five_prime_UTR	572646	572729	.	+	.	Parent=Os06t0109801-00
Chr06	irgsp1_rep	five_prime_UTR	572946	573729	.	+	.	Parent=Os06t0109801-00
Chr06	irgsp1_rep	five_prime_UTR	573817	573849	.	+	.	Parent=Os06t0109801-00
Chr06	irgsp1_rep	CDS	573850	574431	.	+	0	Parent=Os06t0109801-00
Chr06	irgsp1_rep	three_prime_UTR	574432	574483	.	+	.	Parent=Os06t0109801-00
Chr06	irgsp1_rep	mRNA	580670	586443	.	+	.	ID=Os06t0110000-01;Name=Os06t0110000-01;Locus_id=Os06g0110000;CGSNL Gene Symbol=KAO;CGSNL Gene Name=ENT-KAURENE OXIDASE;Oryzabase Gene Symbol Synonym(s)=OsKAO%2C kao%2C CYP88A5%2C OSKAO%2C Os KAO%2C RPE1;Oryzabase Gene Name Synonym(s)=rice ent-kaurenoic acid oxidase%2C ent-kaurenoic acid oxidase%2C Putative cytoChrome P450 DWARF3%2C reduced pollen elongation1;Note=Similar to DWARF3 (Fragment).;Transcript_evidence=AK069429 (DDBJ%2C Best hit);ORF_evidence=B3SNJ1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: monooxygenase activity (GO:0004497),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C B-class (IPR002397),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J023020M04;Oryzabase=5111;Expression=AK069429;TENOR=Os06t0110000-01;KEGG=Os06t0110000-01 (EC:1.14.13.79)
Chr06	irgsp1_rep	five_prime_UTR	580670	580734	.	+	.	Parent=Os06t0110000-01
Chr06	irgsp1_rep	CDS	580735	581003	.	+	0	Parent=Os06t0110000-01
Chr06	irgsp1_rep	CDS	583675	584425	.	+	1	Parent=Os06t0110000-01
Chr06	irgsp1_rep	CDS	584534	584623	.	+	0	Parent=Os06t0110000-01
Chr06	irgsp1_rep	CDS	585129	585207	.	+	0	Parent=Os06t0110000-01
Chr06	irgsp1_rep	CDS	585386	585492	.	+	2	Parent=Os06t0110000-01
Chr06	irgsp1_rep	CDS	585618	585739	.	+	0	Parent=Os06t0110000-01
Chr06	irgsp1_rep	CDS	586002	586104	.	+	1	Parent=Os06t0110000-01
Chr06	irgsp1_rep	three_prime_UTR	586105	586443	.	+	.	Parent=Os06t0110000-01
Chr06	irgsp1_rep	mRNA	587543	591952	.	+	.	ID=Os06t0110100-01;Name=Os06t0110100-01;Locus_id=Os06g0110100;CGSNL Gene Symbol=EYA1;CGSNL Gene Name=HOMOLOG OF ANIMAL EYES ABSENT GENE;Oryzabase Gene Symbol Synonym(s)=OsEya1%2C OSEya1%2C OSEYA1;Oryzabase Gene Name Synonym(s)=homolog of animal eyes absent gene;Note=OSEYA1.;Transcript_evidence=AK068889 (DDBJ%2C Best hit),AK099255 (DDBJ%2C Best hit);ORF_evidence=Q9SSX1 (UniProt);GO=Biological Process: multicellular organismal development (GO:0007275);InterPro=EYA (IPR006545),HAD-like domain (IPR023214);NIAS_FLcDNA=J023002P13,J023002O13;Oryzabase=6142;Expression=AK068889;TENOR=Os06t0110100-01;KEGG=Os06t0110100-01
Chr06	irgsp1_rep	five_prime_UTR	587543	587882	.	+	.	Parent=Os06t0110100-01
Chr06	irgsp1_rep	five_prime_UTR	588152	588158	.	+	.	Parent=Os06t0110100-01
Chr06	irgsp1_rep	CDS	588159	588389	.	+	0	Parent=Os06t0110100-01
Chr06	irgsp1_rep	CDS	588985	589152	.	+	0	Parent=Os06t0110100-01
Chr06	irgsp1_rep	CDS	590132	590225	.	+	0	Parent=Os06t0110100-01
Chr06	irgsp1_rep	CDS	590994	591149	.	+	2	Parent=Os06t0110100-01
Chr06	irgsp1_rep	CDS	591378	591628	.	+	2	Parent=Os06t0110100-01
Chr06	irgsp1_rep	three_prime_UTR	591629	591952	.	+	.	Parent=Os06t0110100-01
Chr06	irgsp1_rep	mRNA	593577	594130	.	+	.	ID=Os06t0110200-01;Name=Os06t0110200-01;Locus_id=Os06g0110200;RAP-DB Gene Symbol Synonym(s)=OsLEA4;RAP-DB Gene Name Synonym(s)=late embryogenesis abundant protein 4;CGSNL Gene Symbol=LEA2;CGSNL Gene Name=LATE EMBRYOGENESIS ABUNDANT PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsLEA2%2C OsLEA4;Oryzabase Gene Name Synonym(s)=late embryogenesis abundant protein 2%2C late embryogenesis abundant protein 4;Note=Late embryogenesis abundant (LEA) protein%2C Abiotic stress response;Transcript_evidence=AK107973;ORF_evidence=Q8H683;GO=Biological Process: embryo development ending in seed dormancy (GO:0009793);InterPro=Late embryogenesis abundant protein%2C LEA_1 subgroup (IPR005513);NIAS_FLcDNA=002-135-D09;Manual Curation=August 25%2C 2020;Literature_PMID=22057936;Oryzabase=10170;Expression=AK107973;TENOR=Os06t0110200-01;KEGG=Os06t0110200-01
Chr06	irgsp1_rep	five_prime_UTR	593577	593660	.	+	.	Parent=Os06t0110200-01
Chr06	irgsp1_rep	CDS	593661	593972	.	+	0	Parent=Os06t0110200-01
Chr06	irgsp1_rep	three_prime_UTR	593973	594130	.	+	.	Parent=Os06t0110200-01
Chr06	irgsp1_rep	mRNA	597125	598441	.	+	.	ID=Os06t0110400-00;Name=Os06t0110400-00;Locus_id=Os06g0110400;Oryzabase Gene Symbol Synonym(s)=OsFbox285%2C Os_F0166;Oryzabase Gene Name Synonym(s)=F-box protein 285;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=EU962397 (DDBJ);ORF_evidence=Q5VRM6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17065;TENOR=Os06t0110400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	597125	598441	.	+	0	Parent=Os06t0110400-00
Chr06	irgsp1_rep	mRNA	623493	626093	.	-	.	ID=Os06t0111100-01;Name=Os06t0111100-01;Locus_id=Os06g0111100;Oryzabase Gene Symbol Synonym(s)=OsFbox286%2C Os_F0619;Oryzabase Gene Name Synonym(s)=F-box protein 286;Note=Similar to F-box domain containing protein.;Transcript_evidence=AK287736 (DDBJ%2C Best hit);ORF_evidence=B6SK84 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810);NIAS_FLcDNA=J065142M07;Oryzabase=17066;TENOR=Os06t0111100-01;KEGG=Os06t0111100-01
Chr06	irgsp1_rep	five_prime_UTR	625990	626093	.	-	.	Parent=Os06t0111100-01
Chr06	irgsp1_rep	CDS	625892	625989	.	-	0	Parent=Os06t0111100-01
Chr06	irgsp1_rep	CDS	623788	624997	.	-	1	Parent=Os06t0111100-01
Chr06	irgsp1_rep	three_prime_UTR	623493	623787	.	-	.	Parent=Os06t0111100-01
Chr06	irgsp1_rep	mRNA	626261	628759	.	+	.	ID=Os06t0111200-01;Name=Os06t0111200-01;Locus_id=Os06g0111200;Oryzabase Gene Symbol Synonym(s)=OsFbox287%2C Os_F0750;Oryzabase Gene Name Synonym(s)=F-box protein 287;Note=Conserved hypothetical protein.;Transcript_evidence=AK072974 (DDBJ%2C Best hit);ORF_evidence=A2Y8G2 (UniProt);NIAS_FLcDNA=J023146G15;Oryzabase=17067;TENOR=Os06t0111200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	626261	626345	.	+	0	Parent=Os06t0111200-01
Chr06	irgsp1_rep	CDS	627219	628420	.	+	2	Parent=Os06t0111200-01
Chr06	irgsp1_rep	three_prime_UTR	628421	628759	.	+	.	Parent=Os06t0111200-01
Chr06	irgsp1_rep	mRNA	629986	633799	.	-	.	ID=Os06t0111300-00;Name=Os06t0111300-00;Locus_id=Os06g0111300;Note=Hypothetical conserved gene.;Transcript_evidence=BT067448 (DDBJ);ORF_evidence=NP_001056584.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os06t0111300-00;KEGG=Os06t0111300-00
Chr06	irgsp1_rep	five_prime_UTR	633784	633799	.	-	.	Parent=Os06t0111300-00
Chr06	irgsp1_rep	CDS	633295	633783	.	-	0	Parent=Os06t0111300-00
Chr06	irgsp1_rep	CDS	631881	633188	.	-	0	Parent=Os06t0111300-00
Chr06	irgsp1_rep	three_prime_UTR	631507	631880	.	-	.	Parent=Os06t0111300-00
Chr06	irgsp1_rep	three_prime_UTR	631221	631325	.	-	.	Parent=Os06t0111300-00
Chr06	irgsp1_rep	three_prime_UTR	631041	631128	.	-	.	Parent=Os06t0111300-00
Chr06	irgsp1_rep	three_prime_UTR	630813	630934	.	-	.	Parent=Os06t0111300-00
Chr06	irgsp1_rep	three_prime_UTR	630619	630683	.	-	.	Parent=Os06t0111300-00
Chr06	irgsp1_rep	three_prime_UTR	629986	630523	.	-	.	Parent=Os06t0111300-00
Chr06	irgsp1_rep	mRNA	634367	640450	.	-	.	ID=Os06t0111400-01;Name=Os06t0111400-01;Locus_id=Os06g0111400;CGSNL Gene Symbol=PXLG1;CGSNL Gene Name=PUTATIVE EXTRA-LARGE G PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsPXLG1;Oryzabase Gene Name Synonym(s)=putative extra-large G protein 1;Note=Guanine nucleotide binding protein (G-protein)%2C alpha subunit family protein.;Transcript_evidence=AK069834 (DDBJ%2C Best hit);ORF_evidence=XP_002890957.1 (RefSeq);GO=Biological Process: signal transduction (GO:0007165),Biological Process: G-protein coupled receptor protein signaling pathway (GO:0007186),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: guanyl nucleotide binding (GO:0019001);InterPro=Guanine nucleotide binding protein (G-protein)%2C alpha subunit (IPR001019),G protein alpha subunit%2C helical insertion (IPR011025);NIAS_FLcDNA=J023031J07;Oryzabase=23515;Expression=AK069834;TENOR=Os06t0111400-01;KEGG=Os06t0111400-01
Chr06	irgsp1_rep	five_prime_UTR	639925	640450	.	-	.	Parent=Os06t0111400-01
Chr06	irgsp1_rep	CDS	638932	639924	.	-	0	Parent=Os06t0111400-01
Chr06	irgsp1_rep	CDS	638708	638845	.	-	0	Parent=Os06t0111400-01
Chr06	irgsp1_rep	CDS	637768	637872	.	-	0	Parent=Os06t0111400-01
Chr06	irgsp1_rep	CDS	637290	637472	.	-	0	Parent=Os06t0111400-01
Chr06	irgsp1_rep	CDS	636682	636859	.	-	0	Parent=Os06t0111400-01
Chr06	irgsp1_rep	CDS	636354	636598	.	-	2	Parent=Os06t0111400-01
Chr06	irgsp1_rep	CDS	635863	636035	.	-	0	Parent=Os06t0111400-01
Chr06	irgsp1_rep	CDS	635345	635542	.	-	1	Parent=Os06t0111400-01
Chr06	irgsp1_rep	CDS	634594	634984	.	-	1	Parent=Os06t0111400-01
Chr06	irgsp1_rep	three_prime_UTR	634367	634593	.	-	.	Parent=Os06t0111400-01
Chr06	irgsp1_rep	mRNA	634262	639360	.	-	.	ID=Os06t0111400-02;Name=Os06t0111400-02;Locus_id=Os06g0111400;CGSNL Gene Symbol=PXLG1;CGSNL Gene Name=PUTATIVE EXTRA-LARGE G PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsPXLG1;Oryzabase Gene Name Synonym(s)=putative extra-large G protein 1;Note=Similar to predicted protein.;Transcript_evidence=AK071761 (DDBJ%2C Best hit);ORF_evidence=XP_002890957.1 (RefSeq);GO=Biological Process: signal transduction (GO:0007165),Biological Process: G-protein coupled receptor protein signaling pathway (GO:0007186),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: guanyl nucleotide binding (GO:0019001);InterPro=Guanine nucleotide binding protein (G-protein)%2C alpha subunit (IPR001019),G protein alpha subunit%2C helical insertion (IPR011025);NIAS_FLcDNA=J023108P13;Oryzabase=23515;Expression=AK071761;TENOR=Os06t0111400-02;KEGG=Os06t0111400-02
Chr06	irgsp1_rep	CDS	638932	639360	.	-	0	Parent=Os06t0111400-02
Chr06	irgsp1_rep	CDS	638708	638845	.	-	0	Parent=Os06t0111400-02
Chr06	irgsp1_rep	CDS	637768	637872	.	-	0	Parent=Os06t0111400-02
Chr06	irgsp1_rep	CDS	637290	637472	.	-	0	Parent=Os06t0111400-02
Chr06	irgsp1_rep	CDS	636682	636859	.	-	0	Parent=Os06t0111400-02
Chr06	irgsp1_rep	CDS	636354	636598	.	-	2	Parent=Os06t0111400-02
Chr06	irgsp1_rep	CDS	635863	636035	.	-	0	Parent=Os06t0111400-02
Chr06	irgsp1_rep	CDS	635345	635542	.	-	1	Parent=Os06t0111400-02
Chr06	irgsp1_rep	CDS	634594	634984	.	-	1	Parent=Os06t0111400-02
Chr06	irgsp1_rep	three_prime_UTR	634262	634593	.	-	.	Parent=Os06t0111400-02
Chr06	irgsp1_rep	mRNA	643712	646718	.	+	.	ID=Os06t0111500-01;Name=Os06t0111500-01;Locus_id=Os06g0111500;Oryzabase Gene Symbol Synonym(s)=Os6PGDH1%2C Os6PGDH%2C 6PGDH1%2C 6PGDH;Oryzabase Gene Name Synonym(s)=6-phosphogluconate dehydrogenase 1%2C cytosolic 6PGDH;Note=Cytosolic 6-phosphogluconate dehydrogenase.;Transcript_evidence=AK065920 (DDBJ%2C Best hit);ORF_evidence=Q7FRX8 (UniProt);GO=Biological Process: pentose-phosphate shunt (GO:0006098),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity (GO:0004616),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: NADP binding (GO:0050661),Molecular Function: coenzyme binding (GO:0050662);InterPro=6-phosphogluconate dehydrogenase%2C decarboxylating (IPR006113),6-phosphogluconate dehydrogenase%2C C-terminal (IPR006114),6-phosphogluconate dehydrogenase%2C NADP-binding (IPR006115),6-phosphogluconate dehydrogenase%2C C-terminal-like (IPR008927),Fibritin/6-phosphogluconate dehydrogenase%2C C-terminal extension (IPR012284),Dehydrogenase%2C multihelical (IPR013328),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013047D08;Oryzabase=15129;Expression=AK065920;TENOR=Os06t0111500-01;KEGG=Os06t0111500-01 (EC:1.1.1.44)
Chr06	irgsp1_rep	five_prime_UTR	643712	643763	.	+	.	Parent=Os06t0111500-01
Chr06	irgsp1_rep	five_prime_UTR	645014	645019	.	+	.	Parent=Os06t0111500-01
Chr06	irgsp1_rep	CDS	645020	646462	.	+	0	Parent=Os06t0111500-01
Chr06	irgsp1_rep	three_prime_UTR	646463	646718	.	+	.	Parent=Os06t0111500-01
Chr06	irgsp1_rep	mRNA	645195	646718	.	+	.	ID=Os06t0111500-02;Name=Os06t0111500-02;Locus_id=Os06g0111500;Oryzabase Gene Symbol Synonym(s)=Os6PGDH1%2C Os6PGDH%2C 6PGDH1%2C 6PGDH;Oryzabase Gene Name Synonym(s)=6-phosphogluconate dehydrogenase 1%2C cytosolic 6PGDH;Note=Similar to 6-phosphogluconate dehydrogenase%2C decarboxylating.;Transcript_evidence=AK059699 (DDBJ%2C Best hit);ORF_evidence=Q7FRX8 (UniProt);GO=Biological Process: pentose-phosphate shunt (GO:0006098),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity (GO:0004616),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: NADP binding (GO:0050661),Molecular Function: coenzyme binding (GO:0050662);InterPro=6-phosphogluconate dehydrogenase%2C decarboxylating (IPR006113),6-phosphogluconate dehydrogenase%2C C-terminal (IPR006114),6-phosphogluconate dehydrogenase%2C NADP-binding (IPR006115),6-phosphogluconate dehydrogenase%2C C-terminal-like (IPR008927),Fibritin/6-phosphogluconate dehydrogenase%2C C-terminal extension (IPR012284),Dehydrogenase%2C multihelical (IPR013328),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-032-C09;Oryzabase=15129;Expression=AK059699;TENOR=Os06t0111500-02;KEGG=Os06t0111500-02 (EC:1.1.1.44)
Chr06	irgsp1_rep	five_prime_UTR	645195	645196	.	+	.	Parent=Os06t0111500-02
Chr06	irgsp1_rep	CDS	645197	646462	.	+	0	Parent=Os06t0111500-02
Chr06	irgsp1_rep	three_prime_UTR	646463	646718	.	+	.	Parent=Os06t0111500-02
Chr06	irgsp1_rep	mRNA	645035	646444	.	-	.	ID=Os06t0111550-00;Name=Os06t0111550-00;Locus_id=Os06g0111550;Note=Hypothetical protein.;Transcript_evidence=tplb0055g22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0111550-00
Chr06	irgsp1_rep	CDS	646100	646444	.	-	0	Parent=Os06t0111550-00
Chr06	irgsp1_rep	three_prime_UTR	645035	646099	.	-	.	Parent=Os06t0111550-00
Chr06	irgsp1_rep	mRNA	647479	656656	.	+	.	ID=Os06t0111600-01;Name=Os06t0111600-01;Locus_id=Os06g0111600;Note=AMP-dependent synthetase/ligase domain containing protein.;Transcript_evidence=AK065637 (DDBJ%2C Best hit);ORF_evidence=B9FR58 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: acyl carrier activity (GO:0000036),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphopantetheine binding (GO:0031177);InterPro=AMP-dependent synthetase/ligase (IPR000873),Pyrrolo-quinoline quinone repeat (IPR002372),Phosphopantetheine attachment site (IPR006162),Acyl carrier protein-like (IPR009081),Quinonprotein alcohol dehydrogenase-like (IPR011047),Pyrrolo-quinoline quinone beta-propeller repeat (IPR018391),AMP-binding%2C conserved site (IPR020845);NIAS_FLcDNA=J013031C15;TENOR=Os06t0111600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	647479	647480	.	+	.	Parent=Os06t0111600-01
Chr06	irgsp1_rep	CDS	647481	647847	.	+	0	Parent=Os06t0111600-01
Chr06	irgsp1_rep	CDS	648247	648443	.	+	2	Parent=Os06t0111600-01
Chr06	irgsp1_rep	CDS	649151	649351	.	+	0	Parent=Os06t0111600-01
Chr06	irgsp1_rep	CDS	650087	650797	.	+	0	Parent=Os06t0111600-01
Chr06	irgsp1_rep	CDS	650943	651673	.	+	0	Parent=Os06t0111600-01
Chr06	irgsp1_rep	CDS	651941	652016	.	+	1	Parent=Os06t0111600-01
Chr06	irgsp1_rep	CDS	652095	652181	.	+	0	Parent=Os06t0111600-01
Chr06	irgsp1_rep	CDS	652973	653016	.	+	0	Parent=Os06t0111600-01
Chr06	irgsp1_rep	CDS	653401	653509	.	+	1	Parent=Os06t0111600-01
Chr06	irgsp1_rep	CDS	653589	653648	.	+	0	Parent=Os06t0111600-01
Chr06	irgsp1_rep	CDS	653834	653918	.	+	0	Parent=Os06t0111600-01
Chr06	irgsp1_rep	CDS	654177	654241	.	+	2	Parent=Os06t0111600-01
Chr06	irgsp1_rep	CDS	654693	654752	.	+	0	Parent=Os06t0111600-01
Chr06	irgsp1_rep	CDS	654868	654912	.	+	0	Parent=Os06t0111600-01
Chr06	irgsp1_rep	CDS	655696	655799	.	+	0	Parent=Os06t0111600-01
Chr06	irgsp1_rep	CDS	655876	656098	.	+	1	Parent=Os06t0111600-01
Chr06	irgsp1_rep	three_prime_UTR	656099	656217	.	+	.	Parent=Os06t0111600-01
Chr06	irgsp1_rep	three_prime_UTR	656304	656656	.	+	.	Parent=Os06t0111600-01
Chr06	irgsp1_rep	mRNA	657277	659068	.	+	.	ID=Os06t0111700-01;Name=Os06t0111700-01;Locus_id=Os06g0111700;Note=Molecular chaperone%2C heat shock protein%2C Hsp40%2C DnaJ domain containing protein.;Transcript_evidence=AK063401 (DDBJ%2C Best hit);ORF_evidence=NP_001151963.1 (RefSeq);InterPro=Domain of unknown function DUF3444 (IPR024593);NIAS_FLcDNA=001-115-A03;Expression=AK063401;TENOR=Os06t0111700-01;KEGG=Os06t0111700-01
Chr06	irgsp1_rep	five_prime_UTR	657277	657360	.	+	.	Parent=Os06t0111700-01
Chr06	irgsp1_rep	CDS	657361	658797	.	+	0	Parent=Os06t0111700-01
Chr06	irgsp1_rep	three_prime_UTR	658798	659068	.	+	.	Parent=Os06t0111700-01
Chr06	irgsp1_rep	mRNA	660380	665391	.	-	.	ID=Os06t0111800-01;Name=Os06t0111800-01;Locus_id=Os06g0111800;CGSNL Gene Symbol=CSLD2%2C CSLD2;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE D2%2C CELLULOSE SYNTHASE LIKE D2;Oryzabase Gene Symbol Synonym(s)=OsCSLD2%2C OsCslD2%2C OsCSLD2;Note=Similar to CSLD2 (Fragment).;Transcript_evidence=AK102134 (DDBJ%2C Best hit);ORF_evidence=B7EXX7 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J033085F12;Oryzabase=13897,9013;Expression=AK102134;TENOR=Os06t0111800-01;KEGG=Os06t0111800-01
Chr06	irgsp1_rep	five_prime_UTR	665091	665391	.	-	.	Parent=Os06t0111800-01
Chr06	irgsp1_rep	five_prime_UTR	664646	664669	.	-	.	Parent=Os06t0111800-01
Chr06	irgsp1_rep	CDS	663699	664645	.	-	0	Parent=Os06t0111800-01
Chr06	irgsp1_rep	CDS	662576	663383	.	-	1	Parent=Os06t0111800-01
Chr06	irgsp1_rep	CDS	660509	662266	.	-	0	Parent=Os06t0111800-01
Chr06	irgsp1_rep	three_prime_UTR	660380	660508	.	-	.	Parent=Os06t0111800-01
Chr06	irgsp1_rep	mRNA	660148	665281	.	-	.	ID=Os06t0111800-02;Name=Os06t0111800-02;Locus_id=Os06g0111800;CGSNL Gene Symbol=CSLD2%2C CSLD2;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE D2%2C CELLULOSE SYNTHASE LIKE D2;Oryzabase Gene Symbol Synonym(s)=OsCSLD2%2C OsCslD2%2C OsCSLD2;Note=Similar to CSLD2 (Fragment).;Transcript_evidence=AK105393 (DDBJ%2C Best hit);ORF_evidence=Q9LHZ7 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=001-123-B04;Oryzabase=13897,9013;Expression=AK105393;TENOR=Os06t0111800-02;KEGG=Os06t0111800-02
Chr06	irgsp1_rep	five_prime_UTR	665091	665281	.	-	.	Parent=Os06t0111800-02
Chr06	irgsp1_rep	five_prime_UTR	664646	664669	.	-	.	Parent=Os06t0111800-02
Chr06	irgsp1_rep	CDS	663699	664645	.	-	0	Parent=Os06t0111800-02
Chr06	irgsp1_rep	CDS	662576	663383	.	-	1	Parent=Os06t0111800-02
Chr06	irgsp1_rep	CDS	660509	662266	.	-	0	Parent=Os06t0111800-02
Chr06	irgsp1_rep	three_prime_UTR	660148	660508	.	-	.	Parent=Os06t0111800-02
Chr06	irgsp1_rep	mRNA	660288	663348	.	-	.	ID=Os06t0111800-03;Name=Os06t0111800-03;Locus_id=Os06g0111800;CGSNL Gene Symbol=CSLD2%2C CSLD2;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE D2%2C CELLULOSE SYNTHASE LIKE D2;Oryzabase Gene Symbol Synonym(s)=OsCSLD2%2C OsCslD2%2C OsCSLD2;Note=Similar to cDNA clone:001-123-B04%2C full insert sequence.;Transcript_evidence=AK102695 (DDBJ%2C Best hit);ORF_evidence=B7EXX7 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150);NIAS_FLcDNA=J033103F21;Oryzabase=13897,9013;Expression=AK102695;TENOR=Os06t0111800-03;KEGG=Os06t0111800-03
Chr06	irgsp1_rep	five_prime_UTR	663347	663348	.	-	.	Parent=Os06t0111800-03
Chr06	irgsp1_rep	CDS	662576	663346	.	-	0	Parent=Os06t0111800-03
Chr06	irgsp1_rep	CDS	660509	662266	.	-	0	Parent=Os06t0111800-03
Chr06	irgsp1_rep	three_prime_UTR	660288	660508	.	-	.	Parent=Os06t0111800-03
Chr06	irgsp1_rep	mRNA	676126	678878	.	+	.	ID=Os06t0112000-01;Name=Os06t0112000-01;Locus_id=Os06g0112000;RAP-DB Gene Symbol Synonym(s)=OsPPR16;RAP-DB Gene Name Synonym(s)=pentatricopeptide repeat protein 16;Note=PLS-DYW subfamily pentatricopeptide repeat (PPR) protein%2C RNA editing in chloroplasts%2C Chlorophyll synthesis%2C Chloroplast development;Transcript_evidence=AK103359;ORF_evidence=Q9LHZ4;GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Tetratricopeptide-like helical domain superfamily (IPR011990),DYW domain (IPR032867),Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J033126M02;Manual Curation=June 26%2C 2020;Literature_PMID=32583432;Expression=AK103359;TENOR=Os06t0112000-01;KEGG=Os06t0112000-01;Subcellular location=chloroplast (GO:0009507)
Chr06	irgsp1_rep	five_prime_UTR	676126	676183	.	+	.	Parent=Os06t0112000-01
Chr06	irgsp1_rep	CDS	676184	678388	.	+	0	Parent=Os06t0112000-01
Chr06	irgsp1_rep	three_prime_UTR	678389	678495	.	+	.	Parent=Os06t0112000-01
Chr06	irgsp1_rep	three_prime_UTR	678607	678878	.	+	.	Parent=Os06t0112000-01
Chr06	irgsp1_rep	mRNA	678930	682173	.	-	.	ID=Os06t0112100-01;Name=Os06t0112100-01;Locus_id=Os06g0112100;Note=Nucleoside phosphorylase%2C family 1 domain containing protein.;Transcript_evidence=AK061381 (DDBJ%2C Best hit),AK069439 (DDBJ%2C Best hit),AK103951 (DDBJ%2C Best hit),AK104422 (DDBJ%2C Best hit),AK104612 (DDBJ%2C Best hit);ORF_evidence=A2Y8H0 (UniProt);GO=Biological Process: nucleoside metabolic process (GO:0009116),Molecular Function: catalytic activity (GO:0003824);InterPro=Nucleoside phosphorylase domain (IPR000845),Nucleoside phosphorylase (IPR018017);NIAS_FLcDNA=006-304-H03,J023025O05,001-014-E01,006-205-D08,006-309-D05;TENOR=Os06t0112100-01
Chr06	irgsp1_rep	five_prime_UTR	682127	682173	.	-	.	Parent=Os06t0112100-01
Chr06	irgsp1_rep	CDS	681877	682126	.	-	0	Parent=Os06t0112100-01
Chr06	irgsp1_rep	CDS	681090	681157	.	-	2	Parent=Os06t0112100-01
Chr06	irgsp1_rep	CDS	680755	680910	.	-	0	Parent=Os06t0112100-01
Chr06	irgsp1_rep	CDS	679720	679911	.	-	0	Parent=Os06t0112100-01
Chr06	irgsp1_rep	CDS	679465	679638	.	-	0	Parent=Os06t0112100-01
Chr06	irgsp1_rep	CDS	679143	679334	.	-	0	Parent=Os06t0112100-01
Chr06	irgsp1_rep	three_prime_UTR	678930	679142	.	-	.	Parent=Os06t0112100-01
Chr06	irgsp1_rep	mRNA	690577	690807	.	+	.	ID=Os06t0112151-00;Name=Os06t0112151-00;Locus_id=Os06g0112151;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os06t0112151-00
Chr06	irgsp1_rep	CDS	690577	690807	.	+	0	Parent=Os06t0112151-00
Chr06	irgsp1_rep	mRNA	692774	695655	.	+	.	ID=Os06t0112200-01;Name=Os06t0112200-01;Locus_id=Os06g0112200;CGSNL Gene Symbol=MTN;CGSNL Gene Name=METHYLTHIOADENOSINE/S-ADENOSYL HOMOCYSTEINE NUCLEOSIDASE;Oryzabase Gene Symbol Synonym(s)=OsMTN;Oryzabase Gene Name Synonym(s)=Methylthioadenosine/S-adenosyl homocysteine nucleosidase%2C 5'-methylthioadenosine nucleosidase%2C MTA nucleosidase;Note=Purine and other phosphorylases%2C family 1 protein.;Transcript_evidence=AK066172 (DDBJ%2C Best hit),AK104481 (DDBJ%2C Best hit),AK104797 (DDBJ%2C Best hit);ORF_evidence=Q8W162 (UniProt);GO=Biological Process: nucleoside metabolic process (GO:0009116),Molecular Function: catalytic activity (GO:0003824);InterPro=Nucleoside phosphorylase domain (IPR000845),Nucleoside phosphorylase (IPR018017);NIAS_FLcDNA=J013056A05,006-301-G11,001-039-H06;Oryzabase=11129;TENOR=Os06t0112200-01
Chr06	irgsp1_rep	five_prime_UTR	692774	692850	.	+	.	Parent=Os06t0112200-01
Chr06	irgsp1_rep	CDS	692851	692926	.	+	0	Parent=Os06t0112200-01
Chr06	irgsp1_rep	CDS	693009	693072	.	+	2	Parent=Os06t0112200-01
Chr06	irgsp1_rep	CDS	693521	693612	.	+	1	Parent=Os06t0112200-01
Chr06	irgsp1_rep	CDS	693736	693842	.	+	2	Parent=Os06t0112200-01
Chr06	irgsp1_rep	CDS	693931	694005	.	+	0	Parent=Os06t0112200-01
Chr06	irgsp1_rep	CDS	694399	694473	.	+	0	Parent=Os06t0112200-01
Chr06	irgsp1_rep	CDS	694699	694791	.	+	0	Parent=Os06t0112200-01
Chr06	irgsp1_rep	CDS	695176	695373	.	+	0	Parent=Os06t0112200-01
Chr06	irgsp1_rep	three_prime_UTR	695374	695655	.	+	.	Parent=Os06t0112200-01
Chr06	irgsp1_rep	mRNA	696034	698216	.	+	.	ID=Os06t0112300-01;Name=Os06t0112300-01;Locus_id=Os06g0112300;Note=Transcriptional factor B3 family protein.;Transcript_evidence=AK106920 (DDBJ%2C Best hit);ORF_evidence=Q9LHY9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=002-119-B04;Expression=AK106920;TENOR=Os06t0112300-01;KEGG=Os06t0112300-01
Chr06	irgsp1_rep	five_prime_UTR	696034	696070	.	+	.	Parent=Os06t0112300-01
Chr06	irgsp1_rep	CDS	696442	696654	.	+	0	Parent=Os06t0112300-01
Chr06	irgsp1_rep	CDS	697668	697982	.	+	0	Parent=Os06t0112300-01
Chr06	irgsp1_rep	three_prime_UTR	697983	698216	.	+	.	Parent=Os06t0112300-01
Chr06	irgsp1_rep	mRNA	699114	702164	.	+	.	ID=Os06t0112400-01;Name=Os06t0112400-01;Locus_id=Os06g0112400;Oryzabase Gene Name Synonym(s)=PIBP1 Homolog;Note=Aldo/keto reductase domain containing protein.;Transcript_evidence=AK061483 (DDBJ%2C Best hit),AK074027 (DDBJ%2C Best hit),AK099246 (DDBJ%2C Best hit),AK104301 (DDBJ%2C Best hit);ORF_evidence=B6TI68 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Aldo/keto reductase (IPR001395),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=006-308-H08,J033076C18,J013116H22,001-011-A08;Oryzabase=23326;TENOR=Os06t0112400-01
Chr06	irgsp1_rep	five_prime_UTR	699114	699235	.	+	.	Parent=Os06t0112400-01
Chr06	irgsp1_rep	CDS	699236	699250	.	+	0	Parent=Os06t0112400-01
Chr06	irgsp1_rep	CDS	700176	700279	.	+	0	Parent=Os06t0112400-01
Chr06	irgsp1_rep	CDS	700381	700456	.	+	1	Parent=Os06t0112400-01
Chr06	irgsp1_rep	CDS	700986	701069	.	+	0	Parent=Os06t0112400-01
Chr06	irgsp1_rep	CDS	701419	701925	.	+	0	Parent=Os06t0112400-01
Chr06	irgsp1_rep	three_prime_UTR	701926	702164	.	+	.	Parent=Os06t0112400-01
Chr06	irgsp1_rep	mRNA	702342	702409	.	+	.	ID=Os06t0112550-00;Name=Os06t0112550-00;Locus_id=Os06g0112550;Note=Non-protein coding transcript.;Transcript_evidence=X06284 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0112550-00
Chr06	irgsp1_rep	exon	702342	702409	.	+	.	Parent=Os06t0112550-00
Chr06	irgsp1_rep	mRNA	716768	718014	.	+	.	ID=Os06t0112700-00;Name=Os06t0112700-00;Locus_id=Os06g0112700;CGSNL Gene Symbol=DLN156;CGSNL Gene Name=DLN REPRESSOR 156;Oryzabase Gene Symbol Synonym(s)=R2R3-MYB%2C OsDLN156;Oryzabase Gene Name Synonym(s)=DLN repressor 156%2C DLN motif protein 156;Note=Similar to Typical P-type R2R3 Myb protein (Fragment).;Transcript_evidence=FP099732 (DDBJ);ORF_evidence=Q8S3Y4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);Oryzabase=16294;TENOR=Os06t0112700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	716768	716818	.	+	.	Parent=Os06t0112700-00
Chr06	irgsp1_rep	CDS	716819	717084	.	+	0	Parent=Os06t0112700-00
Chr06	irgsp1_rep	CDS	717177	718014	.	+	1	Parent=Os06t0112700-00
Chr06	irgsp1_rep	mRNA	725065	728229	.	-	.	ID=Os06t0112800-01;Name=Os06t0112800-01;Locus_id=Os06g0112800;CGSNL Gene Symbol=GSL1;CGSNL Gene Name=BETA-1%2C3-GLUCANASE ACTIVITY 1;Oryzabase Gene Symbol Synonym(s)=OsGSL1;Oryzabase Gene Name Synonym(s)=Oryza sativa callose synthase 1%2C callose synthase 1;Note=Similar to Callose synthase 1 catalytic subunit.;Transcript_evidence=AK071856 (DDBJ%2C Best hit);ORF_evidence=C8C9X2 (UniProt);GO=Biological Process: 1%2C3-beta-D-glucan biosynthetic process (GO:0006075),Cellular Component: 1%2C3-beta-D-glucan synthase complex (GO:0000148),Cellular Component: membrane (GO:0016020),Molecular Function: 1%2C3-beta-D-glucan synthase activity (GO:0003843);InterPro=Glycosyl transferase%2C family 48 (IPR003440);NIAS_FLcDNA=J023122H24;Oryzabase=8536;Expression=AK071856;TENOR=Os06t0112800-01;KEGG=Os06t0112800-01
Chr06	irgsp1_rep	five_prime_UTR	728229	728229	.	-	.	Parent=Os06t0112800-01
Chr06	irgsp1_rep	CDS	728118	728228	.	-	0	Parent=Os06t0112800-01
Chr06	irgsp1_rep	CDS	727890	728003	.	-	0	Parent=Os06t0112800-01
Chr06	irgsp1_rep	CDS	727727	727815	.	-	0	Parent=Os06t0112800-01
Chr06	irgsp1_rep	CDS	727105	727263	.	-	1	Parent=Os06t0112800-01
Chr06	irgsp1_rep	CDS	726737	726839	.	-	1	Parent=Os06t0112800-01
Chr06	irgsp1_rep	CDS	726519	726638	.	-	0	Parent=Os06t0112800-01
Chr06	irgsp1_rep	CDS	726037	726087	.	-	0	Parent=Os06t0112800-01
Chr06	irgsp1_rep	CDS	725755	725937	.	-	0	Parent=Os06t0112800-01
Chr06	irgsp1_rep	CDS	725295	725531	.	-	0	Parent=Os06t0112800-01
Chr06	irgsp1_rep	three_prime_UTR	725065	725294	.	-	.	Parent=Os06t0112800-01
Chr06	irgsp1_rep	mRNA	725044	727931	.	-	.	ID=Os06t0112800-02;Name=Os06t0112800-02;Locus_id=Os06g0112800;CGSNL Gene Symbol=GSL1;CGSNL Gene Name=BETA-1%2C3-GLUCANASE ACTIVITY 1;Oryzabase Gene Symbol Synonym(s)=OsGSL1;Oryzabase Gene Name Synonym(s)=Oryza sativa callose synthase 1%2C callose synthase 1;Note=Similar to predicted protein.;Transcript_evidence=AK059569 (DDBJ%2C Best hit);ORF_evidence=C8C9X2 (UniProt);GO=Biological Process: 1%2C3-beta-D-glucan biosynthetic process (GO:0006075),Cellular Component: 1%2C3-beta-D-glucan synthase complex (GO:0000148),Cellular Component: membrane (GO:0016020),Molecular Function: 1%2C3-beta-D-glucan synthase activity (GO:0003843);InterPro=Glycosyl transferase%2C family 48 (IPR003440);NIAS_FLcDNA=001-029-H12;Oryzabase=8536;Expression=AK059569;TENOR=Os06t0112800-02;KEGG=Os06t0112800-02
Chr06	irgsp1_rep	CDS	727890	727931	.	-	0	Parent=Os06t0112800-02
Chr06	irgsp1_rep	CDS	727727	727815	.	-	0	Parent=Os06t0112800-02
Chr06	irgsp1_rep	CDS	727105	727263	.	-	1	Parent=Os06t0112800-02
Chr06	irgsp1_rep	CDS	726737	726839	.	-	1	Parent=Os06t0112800-02
Chr06	irgsp1_rep	CDS	726519	726638	.	-	0	Parent=Os06t0112800-02
Chr06	irgsp1_rep	CDS	726037	726087	.	-	0	Parent=Os06t0112800-02
Chr06	irgsp1_rep	CDS	725755	725937	.	-	0	Parent=Os06t0112800-02
Chr06	irgsp1_rep	CDS	725295	725531	.	-	0	Parent=Os06t0112800-02
Chr06	irgsp1_rep	three_prime_UTR	725044	725294	.	-	.	Parent=Os06t0112800-02
Chr06	irgsp1_rep	mRNA	741319	747628	.	-	.	ID=Os06t0113150-00;Name=Os06t0113150-00;Locus_id=Os06g0113150;CGSNL Gene Symbol=GSL1;CGSNL Gene Name=BETA-1%2C3-GLUCANASE ACTIVITY 1;Oryzabase Gene Symbol Synonym(s)=OsGSL1;Oryzabase Gene Name Synonym(s)=Oryza sativa callose synthase 1%2C callose synthase 1;Note=Similar to GSL8 (GLUCAN SYNTHASE-LIKE 8)%3B 1%2C3-beta-glucan synthase/ transferase%2C transferring glycosyl groups.;Transcript_evidence=BT037384 (DDBJ);ORF_evidence=NP_850271.4 (RefSeq);Oryzabase=8536;TENOR=Os06t0113150-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	747600	747628	.	-	.	Parent=Os06t0113150-00
Chr06	irgsp1_rep	CDS	747356	747599	.	-	0	Parent=Os06t0113150-00
Chr06	irgsp1_rep	CDS	747103	747200	.	-	2	Parent=Os06t0113150-00
Chr06	irgsp1_rep	CDS	746864	747018	.	-	0	Parent=Os06t0113150-00
Chr06	irgsp1_rep	CDS	746487	746610	.	-	1	Parent=Os06t0113150-00
Chr06	irgsp1_rep	CDS	746237	746350	.	-	0	Parent=Os06t0113150-00
Chr06	irgsp1_rep	CDS	745997	746122	.	-	0	Parent=Os06t0113150-00
Chr06	irgsp1_rep	CDS	744456	744545	.	-	0	Parent=Os06t0113150-00
Chr06	irgsp1_rep	CDS	743815	743912	.	-	0	Parent=Os06t0113150-00
Chr06	irgsp1_rep	CDS	743613	743730	.	-	1	Parent=Os06t0113150-00
Chr06	irgsp1_rep	CDS	741914	742042	.	-	0	Parent=Os06t0113150-00
Chr06	irgsp1_rep	CDS	741507	741583	.	-	0	Parent=Os06t0113150-00
Chr06	irgsp1_rep	CDS	741325	741421	.	-	1	Parent=Os06t0113150-00
Chr06	irgsp1_rep	three_prime_UTR	741319	741324	.	-	.	Parent=Os06t0113150-00
Chr06	irgsp1_rep	mRNA	777222	779783	.	-	.	ID=Os06t0113500-01;Name=Os06t0113500-01;Locus_id=Os06g0113500;Note=Conserved hypothetical protein.;Transcript_evidence=AK107286 (DDBJ%2C Best hit);ORF_evidence=A3B7Q2 (UniProt);NIAS_FLcDNA=002-126-B06;TENOR=Os06t0113500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	779708	779783	.	-	.	Parent=Os06t0113500-01
Chr06	irgsp1_rep	five_prime_UTR	778747	778767	.	-	.	Parent=Os06t0113500-01
Chr06	irgsp1_rep	CDS	778435	778746	.	-	0	Parent=Os06t0113500-01
Chr06	irgsp1_rep	three_prime_UTR	777222	778434	.	-	.	Parent=Os06t0113500-01
Chr06	irgsp1_rep	mRNA	779995	782222	.	+	.	ID=Os06t0113600-01;Name=Os06t0113600-01;Locus_id=Os06g0113600;Oryzabase Gene Symbol Synonym(s)=OsFbox288%2C Os_F0622;Oryzabase Gene Name Synonym(s)=F-box protein 288;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK062095 (DDBJ%2C Best hit),AK101235 (DDBJ%2C Best hit),AK122025 (DDBJ%2C Best hit);ORF_evidence=B6SK84 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810);NIAS_FLcDNA=001-044-H10,J033031K01,J033112A03;Oryzabase=17068;Expression=AK062095;TENOR=Os06t0113600-01;KEGG=Os06t0113600-01
Chr06	irgsp1_rep	five_prime_UTR	779995	780095	.	+	.	Parent=Os06t0113600-01
Chr06	irgsp1_rep	CDS	780096	780154	.	+	0	Parent=Os06t0113600-01
Chr06	irgsp1_rep	CDS	780881	782051	.	+	1	Parent=Os06t0113600-01
Chr06	irgsp1_rep	three_prime_UTR	782052	782222	.	+	.	Parent=Os06t0113600-01
Chr06	irgsp1_rep	mRNA	786863	787404	.	-	.	ID=Os06t0113800-00;Name=Os06t0113800-00;Locus_id=Os06g0113800;Oryzabase Gene Symbol Synonym(s)=OSK10;Oryzabase Gene Name Synonym(s)=S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 10%2C Oryza sativa SKP1-like gene 10;Note=Similar to Kinetechore (Skp1p-like) protein-like.;Transcript_evidence=AY600991 (DDBJ%2C Best hit);ORF_evidence=B3TLS0 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);InterPro=SKP1 component (IPR001232),BTB/POZ fold (IPR011333),SKP1 component%2C dimerisation (IPR016072),SKP1 component%2C POZ (IPR016073),E3 ubiquitin ligase%2C SCF complex%2C Skp subunit (IPR016897);Oryzabase=18286;Expression=AY600991;TENOR=Os06t0113800-00;KEGG=Os06t0113800-00
Chr06	irgsp1_rep	five_prime_UTR	787376	787404	.	-	.	Parent=Os06t0113800-00
Chr06	irgsp1_rep	CDS	786875	787375	.	-	0	Parent=Os06t0113800-00
Chr06	irgsp1_rep	three_prime_UTR	786863	786874	.	-	.	Parent=Os06t0113800-00
Chr06	irgsp1_rep	mRNA	796330	804194	.	-	.	ID=Os06t0113900-01;Name=Os06t0113900-01;Locus_id=Os06g0113900;Note=Major facilitator superfamily%2C general substrate transporter domain containing protein.;Transcript_evidence=AK120464 (DDBJ%2C Best hit);ORF_evidence=B7ETL1 (UniProt);InterPro=Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J013108C12;Expression=AK120464;TENOR=Os06t0113900-01;KEGG=Os06t0113900-01
Chr06	irgsp1_rep	five_prime_UTR	802512	804194	.	-	.	Parent=Os06t0113900-01
Chr06	irgsp1_rep	five_prime_UTR	801999	802089	.	-	.	Parent=Os06t0113900-01
Chr06	irgsp1_rep	five_prime_UTR	800417	800516	.	-	.	Parent=Os06t0113900-01
Chr06	irgsp1_rep	CDS	799959	800416	.	-	0	Parent=Os06t0113900-01
Chr06	irgsp1_rep	CDS	796675	797974	.	-	1	Parent=Os06t0113900-01
Chr06	irgsp1_rep	three_prime_UTR	796330	796674	.	-	.	Parent=Os06t0113900-01
Chr06	irgsp1_rep	mRNA	796400	800812	.	-	.	ID=Os06t0113900-02;Name=Os06t0113900-02;Locus_id=Os06g0113900;Note=Major facilitator superfamily%2C general substrate transporter domain containing protein.;Transcript_evidence=AK102259 (DDBJ%2C Best hit);ORF_evidence=B7ETL1 (UniProt);InterPro=Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J033088K01;Expression=AK102259;TENOR=Os06t0113900-02;KEGG=Os06t0113900-02
Chr06	irgsp1_rep	five_prime_UTR	800417	800812	.	-	.	Parent=Os06t0113900-02
Chr06	irgsp1_rep	CDS	799959	800416	.	-	0	Parent=Os06t0113900-02
Chr06	irgsp1_rep	CDS	796675	797974	.	-	1	Parent=Os06t0113900-02
Chr06	irgsp1_rep	three_prime_UTR	796400	796674	.	-	.	Parent=Os06t0113900-02
Chr06	irgsp1_rep	mRNA	796422	800649	.	-	.	ID=Os06t0113900-03;Name=Os06t0113900-03;Locus_id=Os06g0113900;Note=Major facilitator superfamily%2C general substrate transporter domain containing protein.;Transcript_evidence=AK067430 (DDBJ%2C Best hit);ORF_evidence=B7ETL1 (UniProt);InterPro=Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J013106B06;Expression=AK067430;TENOR=Os06t0113900-03;KEGG=Os06t0113900-03
Chr06	irgsp1_rep	five_prime_UTR	800417	800649	.	-	.	Parent=Os06t0113900-03
Chr06	irgsp1_rep	CDS	799959	800416	.	-	0	Parent=Os06t0113900-03
Chr06	irgsp1_rep	CDS	796675	797974	.	-	1	Parent=Os06t0113900-03
Chr06	irgsp1_rep	three_prime_UTR	796422	796674	.	-	.	Parent=Os06t0113900-03
Chr06	irgsp1_rep	mRNA	796330	799957	.	-	.	ID=Os06t0113900-04;Name=Os06t0113900-04;Locus_id=Os06g0113900;Note=Similar to cDNA clone:J033107D23%2C full insert sequence.;Transcript_evidence=AK100531 (DDBJ%2C Best hit);ORF_evidence=B7ETL1 (UniProt);InterPro=Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J023101I10;Expression=AK100531;TENOR=Os06t0113900-04;KEGG=Os06t0113900-04
Chr06	irgsp1_rep	five_prime_UTR	797671	799957	.	-	.	Parent=Os06t0113900-04
Chr06	irgsp1_rep	CDS	796675	797670	.	-	0	Parent=Os06t0113900-04
Chr06	irgsp1_rep	three_prime_UTR	796330	796674	.	-	.	Parent=Os06t0113900-04
Chr06	irgsp1_rep	mRNA	796422	798037	.	-	.	ID=Os06t0113900-05;Name=Os06t0113900-05;Locus_id=Os06g0113900;Note=Similar to cDNA clone:J033107D23%2C full insert sequence.;Transcript_evidence=AK061817 (DDBJ%2C Best hit);ORF_evidence=B7ETL1 (UniProt);NIAS_FLcDNA=001-040-B07;TENOR=Os06t0113900-05;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	797645	798037	.	-	.	Parent=Os06t0113900-05
Chr06	irgsp1_rep	CDS	797594	797644	.	-	0	Parent=Os06t0113900-05
Chr06	irgsp1_rep	CDS	796675	797427	.	-	0	Parent=Os06t0113900-05
Chr06	irgsp1_rep	three_prime_UTR	796422	796674	.	-	.	Parent=Os06t0113900-05
Chr06	irgsp1_rep	mRNA	796422	797729	.	-	.	ID=Os06t0113900-06;Name=Os06t0113900-06;Locus_id=Os06g0113900;Note=Hypothetical conserved gene.;Transcript_evidence=AK102765 (DDBJ%2C Best hit);ORF_evidence=B9FR61 (UniProt);InterPro=Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J033107D23;Expression=AK102765;TENOR=Os06t0113900-06;KEGG=Os06t0113900-06
Chr06	irgsp1_rep	five_prime_UTR	797728	797729	.	-	.	Parent=Os06t0113900-06
Chr06	irgsp1_rep	CDS	796675	797727	.	-	0	Parent=Os06t0113900-06
Chr06	irgsp1_rep	three_prime_UTR	796422	796674	.	-	.	Parent=Os06t0113900-06
Chr06	irgsp1_rep	mRNA	805534	810570	.	-	.	ID=Os06t0113950-01;Name=Os06t0113950-01;Locus_id=Os06g0113950;Note=Hypothetical conserved gene.;Transcript_evidence=AK065021 (DDBJ%2C Best hit);ORF_evidence=B9FR62 (UniProt);NIAS_FLcDNA=J013001F23;Expression=AK065021;TENOR=Os06t0113950-01;KEGG=Os06t0113950-01
Chr06	irgsp1_rep	five_prime_UTR	810203	810570	.	-	.	Parent=Os06t0113950-01
Chr06	irgsp1_rep	five_prime_UTR	808835	808884	.	-	.	Parent=Os06t0113950-01
Chr06	irgsp1_rep	CDS	808780	808834	.	-	0	Parent=Os06t0113950-01
Chr06	irgsp1_rep	CDS	808505	808662	.	-	2	Parent=Os06t0113950-01
Chr06	irgsp1_rep	three_prime_UTR	808486	808504	.	-	.	Parent=Os06t0113950-01
Chr06	irgsp1_rep	three_prime_UTR	808199	808297	.	-	.	Parent=Os06t0113950-01
Chr06	irgsp1_rep	three_prime_UTR	807897	807999	.	-	.	Parent=Os06t0113950-01
Chr06	irgsp1_rep	three_prime_UTR	807699	807746	.	-	.	Parent=Os06t0113950-01
Chr06	irgsp1_rep	three_prime_UTR	805534	806988	.	-	.	Parent=Os06t0113950-01
Chr06	irgsp1_rep	mRNA	804765	810498	.	-	.	ID=Os06t0113950-02;Name=Os06t0113950-02;Locus_id=Os06g0113950;Note=Similar to RuBisCO large subunit-binding protein subunit beta.;Transcript_evidence=AK072781 (DDBJ%2C Best hit);ORF_evidence=B6THN2 (UniProt);NIAS_FLcDNA=J023139G02;TENOR=Os06t0113950-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	810203	810498	.	-	.	Parent=Os06t0113950-02
Chr06	irgsp1_rep	five_prime_UTR	808780	808884	.	-	.	Parent=Os06t0113950-02
Chr06	irgsp1_rep	five_prime_UTR	808509	808662	.	-	.	Parent=Os06t0113950-02
Chr06	irgsp1_rep	CDS	808486	808508	.	-	0	Parent=Os06t0113950-02
Chr06	irgsp1_rep	CDS	808199	808297	.	-	1	Parent=Os06t0113950-02
Chr06	irgsp1_rep	CDS	807938	807992	.	-	1	Parent=Os06t0113950-02
Chr06	irgsp1_rep	three_prime_UTR	807897	807937	.	-	.	Parent=Os06t0113950-02
Chr06	irgsp1_rep	three_prime_UTR	807699	807746	.	-	.	Parent=Os06t0113950-02
Chr06	irgsp1_rep	three_prime_UTR	804765	806958	.	-	.	Parent=Os06t0113950-02
Chr06	irgsp1_rep	mRNA	811046	816534	.	-	.	ID=Os06t0114000-02;Name=Os06t0114000-02;Locus_id=Os06g0114000;RAP-DB Gene Symbol Synonym(s)=OsCpn6&beta%3B1;RAP-DB Gene Name Synonym(s)=chaperonin 60 beta subunit 1;Oryzabase Gene Symbol Synonym(s)=OsCPn60beta1%2C OsCPn60b1;Oryzabase Gene Name Synonym(s)=chaperonin 60 beta subunit 1;Note=Chaperonin 60 (Cpn60) protein beta subunit%2C Chloroplast development;Transcript_evidence=AK101334;ORF_evidence=Q9LWT6;GO=Biological Process: protein folding (GO:0006457),Biological Process: protein refolding (GO:0042026),Molecular Function: ATP binding (GO:0005524),Cellular Component: cytoplasm (GO:0005737);InterPro=GroEL-like equatorial domain superfamily (IPR027413),TCP-1-like chaperonin intermediate domain superfamily (IPR027410),GroEL-like apical domain superfamily (IPR027409),Chaperonin Cpn60/TCP-1 family (IPR002423),Chaperonin Cpn60 (IPR001844),Chaperonin Cpn60%2C conserved site (IPR018370);NIAS_FLcDNA=J033034I03;Manual Curation=June 11%2C 2020;Literature_PMID=32512821;Oryzabase=14350;Expression=AK101334;TENOR=Os06t0114000-02;Subcellular location=chloroplast (GO:0009507)
Chr06	irgsp1_rep	five_prime_UTR	816453	816534	.	-	.	Parent=Os06t0114000-02
Chr06	irgsp1_rep	five_prime_UTR	815453	815458	.	-	.	Parent=Os06t0114000-02
Chr06	irgsp1_rep	CDS	815234	815452	.	-	0	Parent=Os06t0114000-02
Chr06	irgsp1_rep	CDS	815013	815138	.	-	0	Parent=Os06t0114000-02
Chr06	irgsp1_rep	CDS	814444	814581	.	-	0	Parent=Os06t0114000-02
Chr06	irgsp1_rep	CDS	814242	814337	.	-	0	Parent=Os06t0114000-02
Chr06	irgsp1_rep	CDS	813831	814073	.	-	0	Parent=Os06t0114000-02
Chr06	irgsp1_rep	CDS	813506	813740	.	-	0	Parent=Os06t0114000-02
Chr06	irgsp1_rep	CDS	813209	813378	.	-	2	Parent=Os06t0114000-02
Chr06	irgsp1_rep	CDS	812856	812933	.	-	0	Parent=Os06t0114000-02
Chr06	irgsp1_rep	CDS	812660	812731	.	-	0	Parent=Os06t0114000-02
Chr06	irgsp1_rep	CDS	812409	812513	.	-	0	Parent=Os06t0114000-02
Chr06	irgsp1_rep	CDS	812143	812235	.	-	0	Parent=Os06t0114000-02
Chr06	irgsp1_rep	CDS	811973	812065	.	-	0	Parent=Os06t0114000-02
Chr06	irgsp1_rep	CDS	811397	811520	.	-	0	Parent=Os06t0114000-02
Chr06	irgsp1_rep	CDS	811282	811295	.	-	2	Parent=Os06t0114000-02
Chr06	irgsp1_rep	three_prime_UTR	811046	811281	.	-	.	Parent=Os06t0114000-02
Chr06	irgsp1_rep	mRNA	811064	815114	.	-	.	ID=Os06t0114000-03;Name=Os06t0114000-03;Locus_id=Os06g0114000;CGSNL Gene Symbol=CPN60BETA1;CGSNL Gene Name=CHAPERONIN 60 BETA SUBUNIT 1;Oryzabase Gene Symbol Synonym(s)=OsCPn60beta1%2C OsCPn60b1%2C CPn60b1;Oryzabase Gene Name Synonym(s)=chaperonin 60 beta subunit 1;Note=Similar to RuBisCO large subunit-binding protein subunit beta%2C chloroplastic (Fragment).;Transcript_evidence=AK062098 (DDBJ%2C Best hit);ORF_evidence=Q43831 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: protein refolding (GO:0042026),Biological Process: cellular protein metabolic process (GO:0044267),Cellular Component: cytoplasm (GO:0005737),Molecular Function: ATP binding (GO:0005524);InterPro=Chaperonin Cpn60 (IPR001844),Chaperonin Cpn60/TCP-1 (IPR002423),Chaperonin Cpn60%2C conserved site (IPR018370);NIAS_FLcDNA=001-045-A02;Oryzabase=14350;Expression=AK062098;TENOR=Os06t0114000-03;KEGG=Os06t0114000-03
Chr06	irgsp1_rep	CDS	815013	815114	.	-	0	Parent=Os06t0114000-03
Chr06	irgsp1_rep	CDS	814444	814581	.	-	0	Parent=Os06t0114000-03
Chr06	irgsp1_rep	CDS	814242	814337	.	-	0	Parent=Os06t0114000-03
Chr06	irgsp1_rep	CDS	813831	814073	.	-	0	Parent=Os06t0114000-03
Chr06	irgsp1_rep	CDS	813506	813740	.	-	0	Parent=Os06t0114000-03
Chr06	irgsp1_rep	CDS	813209	813378	.	-	2	Parent=Os06t0114000-03
Chr06	irgsp1_rep	CDS	812856	812933	.	-	0	Parent=Os06t0114000-03
Chr06	irgsp1_rep	CDS	812660	812731	.	-	0	Parent=Os06t0114000-03
Chr06	irgsp1_rep	CDS	812409	812513	.	-	0	Parent=Os06t0114000-03
Chr06	irgsp1_rep	CDS	812143	812235	.	-	0	Parent=Os06t0114000-03
Chr06	irgsp1_rep	CDS	811973	812065	.	-	0	Parent=Os06t0114000-03
Chr06	irgsp1_rep	CDS	811397	811520	.	-	0	Parent=Os06t0114000-03
Chr06	irgsp1_rep	CDS	811282	811295	.	-	2	Parent=Os06t0114000-03
Chr06	irgsp1_rep	three_prime_UTR	811064	811281	.	-	.	Parent=Os06t0114000-03
Chr06	irgsp1_rep	mRNA	811074	813645	.	-	.	ID=Os06t0114000-04;Name=Os06t0114000-04;Locus_id=Os06g0114000;CGSNL Gene Symbol=CPN60BETA1;CGSNL Gene Name=CHAPERONIN 60 BETA SUBUNIT 1;Oryzabase Gene Symbol Synonym(s)=OsCPn60beta1%2C OsCPn60b1%2C CPn60b1;Oryzabase Gene Name Synonym(s)=chaperonin 60 beta subunit 1;Note=Similar to RuBisCo subunit binding-protein beta subunit (Fragment).;Transcript_evidence=AK060117 (DDBJ%2C Best hit);ORF_evidence=Q6B7Q9 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: protein refolding (GO:0042026),Biological Process: cellular protein metabolic process (GO:0044267),Cellular Component: cytoplasm (GO:0005737),Molecular Function: ATP binding (GO:0005524);InterPro=Chaperonin Cpn60 (IPR001844),Chaperonin Cpn60/TCP-1 (IPR002423),Chaperonin Cpn60%2C conserved site (IPR018370);NIAS_FLcDNA=006-308-E09;Oryzabase=14350;Expression=AK060117;TENOR=Os06t0114000-04;KEGG=Os06t0114000-04
Chr06	irgsp1_rep	five_prime_UTR	813645	813645	.	-	.	Parent=Os06t0114000-04
Chr06	irgsp1_rep	CDS	813506	813644	.	-	0	Parent=Os06t0114000-04
Chr06	irgsp1_rep	CDS	813209	813378	.	-	2	Parent=Os06t0114000-04
Chr06	irgsp1_rep	CDS	812856	812933	.	-	0	Parent=Os06t0114000-04
Chr06	irgsp1_rep	CDS	812660	812731	.	-	0	Parent=Os06t0114000-04
Chr06	irgsp1_rep	CDS	812409	812513	.	-	0	Parent=Os06t0114000-04
Chr06	irgsp1_rep	CDS	812143	812235	.	-	0	Parent=Os06t0114000-04
Chr06	irgsp1_rep	CDS	811973	812065	.	-	0	Parent=Os06t0114000-04
Chr06	irgsp1_rep	CDS	811397	811520	.	-	0	Parent=Os06t0114000-04
Chr06	irgsp1_rep	CDS	811282	811295	.	-	2	Parent=Os06t0114000-04
Chr06	irgsp1_rep	three_prime_UTR	811074	811281	.	-	.	Parent=Os06t0114000-04
Chr06	irgsp1_rep	mRNA	811396	816533	.	+	.	ID=Os06t0114066-00;Name=Os06t0114066-00;Locus_id=Os06g0114066;Note=Hypothetical protein.;Transcript_evidence=tplb0058a16 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0114066-00
Chr06	irgsp1_rep	five_prime_UTR	811396	811522	.	+	.	Parent=Os06t0114066-00
Chr06	irgsp1_rep	five_prime_UTR	811971	812053	.	+	.	Parent=Os06t0114066-00
Chr06	irgsp1_rep	five_prime_UTR	812128	812232	.	+	.	Parent=Os06t0114066-00
Chr06	irgsp1_rep	five_prime_UTR	812406	812512	.	+	.	Parent=Os06t0114066-00
Chr06	irgsp1_rep	five_prime_UTR	812659	812729	.	+	.	Parent=Os06t0114066-00
Chr06	irgsp1_rep	five_prime_UTR	812854	812923	.	+	.	Parent=Os06t0114066-00
Chr06	irgsp1_rep	five_prime_UTR	813198	813212	.	+	.	Parent=Os06t0114066-00
Chr06	irgsp1_rep	CDS	813213	813374	.	+	0	Parent=Os06t0114066-00
Chr06	irgsp1_rep	CDS	813496	813744	.	+	0	Parent=Os06t0114066-00
Chr06	irgsp1_rep	three_prime_UTR	813745	813750	.	+	.	Parent=Os06t0114066-00
Chr06	irgsp1_rep	three_prime_UTR	813838	814064	.	+	.	Parent=Os06t0114066-00
Chr06	irgsp1_rep	three_prime_UTR	814225	814332	.	+	.	Parent=Os06t0114066-00
Chr06	irgsp1_rep	three_prime_UTR	814440	814579	.	+	.	Parent=Os06t0114066-00
Chr06	irgsp1_rep	three_prime_UTR	815011	815136	.	+	.	Parent=Os06t0114066-00
Chr06	irgsp1_rep	three_prime_UTR	815229	815460	.	+	.	Parent=Os06t0114066-00
Chr06	irgsp1_rep	three_prime_UTR	816435	816533	.	+	.	Parent=Os06t0114066-00
Chr06	irgsp1_rep	mRNA	818705	818772	.	-	.	ID=Os06t0114132-00;Name=Os06t0114132-00;Locus_id=Os06g0114132;Note=Non-protein coding transcript.;Transcript_evidence=X06284 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0114132-00
Chr06	irgsp1_rep	exon	818705	818772	.	-	.	Parent=Os06t0114132-00
Chr06	irgsp1_rep	mRNA	819373	820356	.	+	.	ID=Os06t0114200-00;Name=Os06t0114200-00;Locus_id=Os06g0114200;CGSNL Gene Symbol=ARFB1A;CGSNL Gene Name=ADP-RIBOSYLATION FACTOR B1A;Oryzabase Gene Symbol Synonym(s)=OsARFB1a%2C ARFB1a;Oryzabase Gene Name Synonym(s)=ADP-ribosylation factor B1a;Note=Similar to ATARFB1B%3B GTP binding.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_197208.1 (RefSeq);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C SAR1-type (IPR006687),Small GTPase superfamily%2C ARF/SAR type (IPR006689),Small GTPase superfamily%2C ARF type (IPR024156);Oryzabase=21007;TENOR=Os06t0114200-00
Chr06	irgsp1_rep	CDS	819373	819426	.	+	0	Parent=Os06t0114200-00
Chr06	irgsp1_rep	CDS	819536	819626	.	+	0	Parent=Os06t0114200-00
Chr06	irgsp1_rep	CDS	819752	819867	.	+	2	Parent=Os06t0114200-00
Chr06	irgsp1_rep	CDS	819961	820086	.	+	0	Parent=Os06t0114200-00
Chr06	irgsp1_rep	CDS	820174	820356	.	+	0	Parent=Os06t0114200-00
Chr06	irgsp1_rep	mRNA	825521	826951	.	+	.	ID=Os06t0114300-01;Name=Os06t0114300-01;Locus_id=Os06g0114300;Oryzabase Gene Symbol Synonym(s)=OsFbox289%2C Os_F0510;Oryzabase Gene Name Synonym(s)=F-box protein 289;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK242261 (DDBJ%2C Best hit);ORF_evidence=NP_001174567.1 (RefSeq);NIAS_FLcDNA=J075184J15;Oryzabase=17069;TENOR=Os06t0114300-01;KEGG=Os06t0114300-01
Chr06	irgsp1_rep	five_prime_UTR	825521	825555	.	+	.	Parent=Os06t0114300-01
Chr06	irgsp1_rep	CDS	825556	826623	.	+	0	Parent=Os06t0114300-01
Chr06	irgsp1_rep	three_prime_UTR	826624	826951	.	+	.	Parent=Os06t0114300-01
Chr06	irgsp1_rep	mRNA	827534	829104	.	+	.	ID=Os06t0114366-00;Name=Os06t0114366-00;Locus_id=Os06g0114366;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK360182 (DDBJ);ORF_evidence=NP_001174568.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os06t0114366-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	827534	829063	.	+	0	Parent=Os06t0114366-00
Chr06	irgsp1_rep	three_prime_UTR	829064	829104	.	+	.	Parent=Os06t0114366-00
Chr06	irgsp1_rep	mRNA	827706	830399	.	-	.	ID=Os06t0114400-00;Name=Os06t0114400-00;Locus_id=Os06g0114400;Note=Conserved hypothetical protein.;Transcript_evidence=AK335198 (DDBJ);ORF_evidence=Q9LWT3 (UniProt);TENOR=Os06t0114400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	830207	830399	.	-	0	Parent=Os06t0114400-00
Chr06	irgsp1_rep	CDS	829430	829614	.	-	2	Parent=Os06t0114400-00
Chr06	irgsp1_rep	CDS	827706	828086	.	-	0	Parent=Os06t0114400-00
Chr06	irgsp1_rep	mRNA	832537	834912	.	-	.	ID=Os06t0114500-01;Name=Os06t0114500-01;Locus_id=Os06g0114500;Note=Similar to ATOZI1 protein (Stress-induced protein OZI1) (AT0ZI1 protein).;Transcript_evidence=AK066771 (DDBJ%2C Best hit);ORF_evidence=NP_001151357.1 (RefSeq);InterPro=Protein of unknown function DUF1138 (IPR009515);NIAS_FLcDNA=J013083K07;Expression=AK066771;TENOR=Os06t0114500-01;KEGG=Os06t0114500-01
Chr06	irgsp1_rep	five_prime_UTR	834800	834912	.	-	.	Parent=Os06t0114500-01
Chr06	irgsp1_rep	five_prime_UTR	833288	833293	.	-	.	Parent=Os06t0114500-01
Chr06	irgsp1_rep	CDS	833194	833287	.	-	0	Parent=Os06t0114500-01
Chr06	irgsp1_rep	CDS	832930	833075	.	-	2	Parent=Os06t0114500-01
Chr06	irgsp1_rep	three_prime_UTR	832926	832929	.	-	.	Parent=Os06t0114500-01
Chr06	irgsp1_rep	three_prime_UTR	832537	832810	.	-	.	Parent=Os06t0114500-01
Chr06	irgsp1_rep	mRNA	832537	834901	.	-	.	ID=Os06t0114500-02;Name=Os06t0114500-02;Locus_id=Os06g0114500;Note=Similar to ATOZI1 protein (Stress-induced protein OZI1) (AT0ZI1 protein).;Transcript_evidence=AK059353 (DDBJ%2C Best hit);ORF_evidence=NP_001151357.1 (RefSeq);InterPro=Protein of unknown function DUF1138 (IPR009515);NIAS_FLcDNA=001-026-D01;Expression=AK059353;TENOR=Os06t0114500-02;KEGG=Os06t0114500-02
Chr06	irgsp1_rep	five_prime_UTR	834800	834901	.	-	.	Parent=Os06t0114500-02
Chr06	irgsp1_rep	five_prime_UTR	833288	833293	.	-	.	Parent=Os06t0114500-02
Chr06	irgsp1_rep	CDS	833194	833287	.	-	0	Parent=Os06t0114500-02
Chr06	irgsp1_rep	CDS	832930	833075	.	-	2	Parent=Os06t0114500-02
Chr06	irgsp1_rep	three_prime_UTR	832929	832929	.	-	.	Parent=Os06t0114500-02
Chr06	irgsp1_rep	three_prime_UTR	832537	832810	.	-	.	Parent=Os06t0114500-02
Chr06	irgsp1_rep	mRNA	835629	838873	.	+	.	ID=Os06t0114600-01;Name=Os06t0114600-01;Locus_id=Os06g0114600;Note=Conserved hypothetical protein.;Transcript_evidence=AK067972 (DDBJ%2C Best hit);ORF_evidence=B9FR65 (UniProt);NIAS_FLcDNA=J013128P12;Expression=AK067972;TENOR=Os06t0114600-01;KEGG=Os06t0114600-01
Chr06	irgsp1_rep	five_prime_UTR	835629	835658	.	+	.	Parent=Os06t0114600-01
Chr06	irgsp1_rep	CDS	835659	835910	.	+	0	Parent=Os06t0114600-01
Chr06	irgsp1_rep	CDS	836459	836567	.	+	0	Parent=Os06t0114600-01
Chr06	irgsp1_rep	CDS	836890	837005	.	+	2	Parent=Os06t0114600-01
Chr06	irgsp1_rep	CDS	837115	837234	.	+	0	Parent=Os06t0114600-01
Chr06	irgsp1_rep	CDS	837346	837435	.	+	0	Parent=Os06t0114600-01
Chr06	irgsp1_rep	CDS	837677	837810	.	+	0	Parent=Os06t0114600-01
Chr06	irgsp1_rep	CDS	838034	838298	.	+	1	Parent=Os06t0114600-01
Chr06	irgsp1_rep	CDS	838614	838766	.	+	0	Parent=Os06t0114600-01
Chr06	irgsp1_rep	three_prime_UTR	838767	838873	.	+	.	Parent=Os06t0114600-01
Chr06	irgsp1_rep	mRNA	839419	841385	.	+	.	ID=Os06t0114650-01;Name=Os06t0114650-01;Locus_id=Os06g0114650;Note=Similar to predicted protein.;Transcript_evidence=AK240881 (DDBJ%2C Best hit);ORF_evidence=NP_565393.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: shikimate kinase activity (GO:0004765),Molecular Function: ATP binding (GO:0005524),Molecular Function: kinase activity (GO:0016301);InterPro=Shikimate kinase (IPR000623),Carbohydrate kinase%2C thermoresistant glucokinase (IPR006001);NIAS_FLcDNA=J065027H08;TENOR=Os06t0114650-01;KEGG=Os06t0114650-01 (EC:2.7.1.12)
Chr06	irgsp1_rep	five_prime_UTR	839419	839778	.	+	.	Parent=Os06t0114650-01
Chr06	irgsp1_rep	CDS	839779	839809	.	+	0	Parent=Os06t0114650-01
Chr06	irgsp1_rep	CDS	840173	840215	.	+	2	Parent=Os06t0114650-01
Chr06	irgsp1_rep	CDS	840631	840710	.	+	1	Parent=Os06t0114650-01
Chr06	irgsp1_rep	CDS	840830	841266	.	+	2	Parent=Os06t0114650-01
Chr06	irgsp1_rep	three_prime_UTR	841267	841385	.	+	.	Parent=Os06t0114650-01
Chr06	irgsp1_rep	mRNA	840147	841250	.	-	.	ID=Os06t0114651-00;Name=Os06t0114651-00;Locus_id=Os06g0114651;Note=Hypothetical gene.;Transcript_evidence=EU970221 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0114651-00;KEGG=Os06t0114651-00
Chr06	irgsp1_rep	five_prime_UTR	840922	841250	.	-	.	Parent=Os06t0114651-00
Chr06	irgsp1_rep	CDS	840697	840921	.	-	0	Parent=Os06t0114651-00
Chr06	irgsp1_rep	three_prime_UTR	840558	840696	.	-	.	Parent=Os06t0114651-00
Chr06	irgsp1_rep	three_prime_UTR	840147	840311	.	-	.	Parent=Os06t0114651-00
Chr06	irgsp1_rep	mRNA	841360	844185	.	-	.	ID=Os06t0114700-01;Name=Os06t0114700-01;Locus_id=Os06g0114700;Note=Protein of unknown function DUF1218 family protein.;Transcript_evidence=AK061552 (DDBJ%2C Best hit);ORF_evidence=B8B1L7 (UniProt);InterPro=Protein of unknown function DUF1218 (IPR009606);NIAS_FLcDNA=006-311-B09;TENOR=Os06t0114700-01
Chr06	irgsp1_rep	five_prime_UTR	843980	844185	.	-	.	Parent=Os06t0114700-01
Chr06	irgsp1_rep	CDS	843884	843979	.	-	0	Parent=Os06t0114700-01
Chr06	irgsp1_rep	CDS	842508	842710	.	-	0	Parent=Os06t0114700-01
Chr06	irgsp1_rep	CDS	841593	841911	.	-	1	Parent=Os06t0114700-01
Chr06	irgsp1_rep	three_prime_UTR	841360	841592	.	-	.	Parent=Os06t0114700-01
Chr06	irgsp1_rep	mRNA	841382	844109	.	-	.	ID=Os06t0114700-02;Name=Os06t0114700-02;Locus_id=Os06g0114700;Note=Protein of unknown function DUF1218 family protein.;Transcript_evidence=AK098848 (DDBJ%2C Best hit);ORF_evidence=B8B1L7 (UniProt);InterPro=Protein of unknown function DUF1218 (IPR009606);NIAS_FLcDNA=J013000D16;Expression=AK098848;TENOR=Os06t0114700-02;KEGG=Os06t0114700-02
Chr06	irgsp1_rep	five_prime_UTR	843980	844109	.	-	.	Parent=Os06t0114700-02
Chr06	irgsp1_rep	CDS	843884	843979	.	-	0	Parent=Os06t0114700-02
Chr06	irgsp1_rep	CDS	842508	842710	.	-	0	Parent=Os06t0114700-02
Chr06	irgsp1_rep	CDS	841593	841911	.	-	1	Parent=Os06t0114700-02
Chr06	irgsp1_rep	three_prime_UTR	841382	841592	.	-	.	Parent=Os06t0114700-02
Chr06	irgsp1_rep	mRNA	841360	844162	.	-	.	ID=Os06t0114700-03;Name=Os06t0114700-03;Locus_id=Os06g0114700;Note=Protein of unknown function DUF1218 family protein.;Transcript_evidence=AK122142 (DDBJ%2C Best hit);ORF_evidence=B8B1L7 (UniProt);InterPro=Protein of unknown function DUF1218 (IPR009606);NIAS_FLcDNA=J033136J12;TENOR=Os06t0114700-03
Chr06	irgsp1_rep	five_prime_UTR	843980	844162	.	-	.	Parent=Os06t0114700-03
Chr06	irgsp1_rep	CDS	843884	843979	.	-	0	Parent=Os06t0114700-03
Chr06	irgsp1_rep	CDS	842508	842710	.	-	0	Parent=Os06t0114700-03
Chr06	irgsp1_rep	CDS	841593	841911	.	-	1	Parent=Os06t0114700-03
Chr06	irgsp1_rep	three_prime_UTR	841360	841592	.	-	.	Parent=Os06t0114700-03
Chr06	irgsp1_rep	mRNA	846526	847085	.	-	.	ID=Os06t0114900-01;Name=Os06t0114900-01;Locus_id=Os06g0114900;Oryzabase Gene Symbol Synonym(s)=OsSTA164;Note=Conserved hypothetical protein.;Transcript_evidence=AK071346 (DDBJ%2C Best hit);ORF_evidence=Q6ZDM2 (UniProt);NIAS_FLcDNA=J023093D11;Oryzabase=19448;TENOR=Os06t0114900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	847085	847085	.	-	.	Parent=Os06t0114900-01
Chr06	irgsp1_rep	CDS	846638	847084	.	-	0	Parent=Os06t0114900-01
Chr06	irgsp1_rep	three_prime_UTR	846526	846637	.	-	.	Parent=Os06t0114900-01
Chr06	irgsp1_rep	mRNA	850897	852192	.	+	.	ID=Os06t0115000-01;Name=Os06t0115000-01;Locus_id=Os06g0115000;Note=Conserved hypothetical protein.;Transcript_evidence=AK108096 (DDBJ%2C Best hit);ORF_evidence=A2Y8J6 (UniProt);NIAS_FLcDNA=002-139-A08;Expression=AK108096;TENOR=Os06t0115000-01;KEGG=Os06t0115000-01
Chr06	irgsp1_rep	five_prime_UTR	850897	850980	.	+	.	Parent=Os06t0115000-01
Chr06	irgsp1_rep	CDS	850981	851454	.	+	0	Parent=Os06t0115000-01
Chr06	irgsp1_rep	three_prime_UTR	851455	852192	.	+	.	Parent=Os06t0115000-01
Chr06	irgsp1_rep	mRNA	852464	854570	.	+	.	ID=Os06t0115100-01;Name=Os06t0115100-01;Locus_id=Os06g0115100;Note=Similar to ATOZI1 protein (Stress-induced protein OZI1) (AT0ZI1 protein).;Transcript_evidence=AK059160 (DDBJ%2C Best hit);ORF_evidence=NP_001151357.1 (RefSeq);InterPro=Protein of unknown function DUF1138 (IPR009515);NIAS_FLcDNA=001-023-D05;Expression=AK059160;TENOR=Os06t0115100-01;KEGG=Os06t0115100-01
Chr06	irgsp1_rep	five_prime_UTR	852464	852533	.	+	.	Parent=Os06t0115100-01
Chr06	irgsp1_rep	five_prime_UTR	854039	854043	.	+	.	Parent=Os06t0115100-01
Chr06	irgsp1_rep	CDS	854044	854137	.	+	0	Parent=Os06t0115100-01
Chr06	irgsp1_rep	CDS	854214	854353	.	+	2	Parent=Os06t0115100-01
Chr06	irgsp1_rep	three_prime_UTR	854354	854570	.	+	.	Parent=Os06t0115100-01
Chr06	irgsp1_rep	mRNA	855842	857988	.	-	.	ID=Os06t0115200-01;Name=Os06t0115200-01;Locus_id=Os06g0115200;RAP-DB Gene Symbol Synonym(s)=MHZ3;RAP-DB Gene Name Synonym(s)=MAOHUZI 3;CGSNL Gene Symbol=MHZ3;CGSNL Gene Name=MAOHUZI 3;Oryzabase Gene Name Synonym(s)=maohuzi3;Note=ER-localized glycosylated membrane protein%2C Ethylene signaling;Transcript_evidence=AK243259;ORF_evidence=Q8H668;NIAS_FLcDNA=J100048P05;Manual Curation=December 18%2C 2018;Literature_PMID=29463697;Oryzabase=22269;TENOR=Os06t0115200-01;KEGG=Os06t0115200-01;Subcellular location=endoplasmic reticulum (GO:0005783) [mainly], organelle (GO:0043226)
Chr06	irgsp1_rep	five_prime_UTR	857968	857988	.	-	.	Parent=Os06t0115200-01
Chr06	irgsp1_rep	CDS	856042	857967	.	-	0	Parent=Os06t0115200-01
Chr06	irgsp1_rep	three_prime_UTR	855842	856041	.	-	.	Parent=Os06t0115200-01
Chr06	irgsp1_rep	mRNA	860908	862566	.	-	.	ID=Os06t0115300-01;Name=Os06t0115300-01;Locus_id=Os06g0115300;RAP-DB Gene Symbol Synonym(s)=OsACBP2;RAP-DB Gene Name Synonym(s)=Acyl-CoA-binding protein 2;CGSNL Gene Symbol=ACBP2;CGSNL Gene Name=ACYL-COA-BINDING PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsACBP2;Oryzabase Gene Name Synonym(s)=Acyl-CoA-binding protein 2;Note=Acyl-CoA-binding protein %2C Stress response;Transcript_evidence=AK058833;ORF_evidence=Q5VRM0;GO=Molecular Function: fatty-acyl-CoA binding (GO:0000062);InterPro=FERM/acyl-CoA-binding protein%2C 3-helical bundle (IPR014352),Acyl-CoA-binding protein%2C ACBP (IPR000582);NIAS_FLcDNA=001-004-B07;Manual Curation=February 16%2C 2015;Literature_PMID=24738983,21128943;Oryzabase=18292;TENOR=Os06t0115300-01;KEGG=Os06t0115300-01
Chr06	irgsp1_rep	five_prime_UTR	862492	862566	.	-	.	Parent=Os06t0115300-01
Chr06	irgsp1_rep	CDS	862480	862491	.	-	0	Parent=Os06t0115300-01
Chr06	irgsp1_rep	CDS	861856	861973	.	-	0	Parent=Os06t0115300-01
Chr06	irgsp1_rep	CDS	861275	861337	.	-	2	Parent=Os06t0115300-01
Chr06	irgsp1_rep	CDS	861079	861161	.	-	2	Parent=Os06t0115300-01
Chr06	irgsp1_rep	three_prime_UTR	860908	861078	.	-	.	Parent=Os06t0115300-01
Chr06	irgsp1_rep	mRNA	864346	866968	.	-	.	ID=Os06t0115400-01;Name=Os06t0115400-01;Locus_id=Os06g0115400;CGSNL Gene Symbol=FSD1.1;CGSNL Gene Name=FE-DEPENDENT SUPEROXIDE DISMUTASE 1.1;Oryzabase Gene Symbol Synonym(s)=OsFSD1.1%2C OsSOD-Fe%2C SOD-Fe%2C FeSOD1;Oryzabase Gene Name Synonym(s)=Fe-dependent SOD 1.1%2C Fe-dependent superoxide dismutase 1.1;Note=Similar to Superoxide dismutase [Fe]%2C chloroplast (EC 1.15.1.1) (Fragment).;Transcript_evidence=AK111656 (DDBJ%2C Best hit);ORF_evidence=B8B1M4 (UniProt);GO=Biological Process: superoxide metabolic process (GO:0006801),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: superoxide dismutase activity (GO:0004784),Molecular Function: metal ion binding (GO:0046872);InterPro=Manganese/iron superoxide dismutase (IPR001189),Manganese/iron superoxide dismutase%2C N-terminal (IPR019831),Manganese/iron superoxide dismutase%2C C-terminal (IPR019832),Manganese/iron superoxide dismutase%2C binding site (IPR019833);NIAS_FLcDNA=J013135D22;Oryzabase=21953;Expression=AK111656;TENOR=Os06t0115400-01;KEGG=Os06t0115400-01 (EC:1.15.1.1)
Chr06	irgsp1_rep	five_prime_UTR	866926	866968	.	-	.	Parent=Os06t0115400-01
Chr06	irgsp1_rep	CDS	866737	866925	.	-	0	Parent=Os06t0115400-01
Chr06	irgsp1_rep	CDS	866178	866387	.	-	0	Parent=Os06t0115400-01
Chr06	irgsp1_rep	CDS	865913	866107	.	-	0	Parent=Os06t0115400-01
Chr06	irgsp1_rep	CDS	865679	865850	.	-	0	Parent=Os06t0115400-01
Chr06	irgsp1_rep	CDS	865447	865565	.	-	2	Parent=Os06t0115400-01
Chr06	irgsp1_rep	CDS	865245	865271	.	-	0	Parent=Os06t0115400-01
Chr06	irgsp1_rep	CDS	865129	865152	.	-	0	Parent=Os06t0115400-01
Chr06	irgsp1_rep	CDS	864805	865044	.	-	0	Parent=Os06t0115400-01
Chr06	irgsp1_rep	three_prime_UTR	864346	864804	.	-	.	Parent=Os06t0115400-01
Chr06	irgsp1_rep	mRNA	864345	866313	.	-	.	ID=Os06t0115400-02;Name=Os06t0115400-02;Locus_id=Os06g0115400;CGSNL Gene Symbol=FSD1.1;CGSNL Gene Name=FE-DEPENDENT SUPEROXIDE DISMUTASE 1.1;Oryzabase Gene Symbol Synonym(s)=OsFSD1.1%2C OsSOD-Fe%2C SOD-Fe%2C FeSOD1;Oryzabase Gene Name Synonym(s)=Fe-dependent SOD 1.1%2C Fe-dependent superoxide dismutase 1.1;Note=Similar to Superoxide dismutase.;Transcript_evidence=AK112038 (DDBJ%2C Best hit);ORF_evidence=B8B1M4 (UniProt);GO=Biological Process: superoxide metabolic process (GO:0006801),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: superoxide dismutase activity (GO:0004784),Molecular Function: metal ion binding (GO:0046872);InterPro=Manganese/iron superoxide dismutase (IPR001189),Manganese/iron superoxide dismutase%2C N-terminal (IPR019831);NIAS_FLcDNA=001-042-G06;Oryzabase=21953;TENOR=Os06t0115400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	866277	866313	.	-	.	Parent=Os06t0115400-02
Chr06	irgsp1_rep	CDS	866178	866276	.	-	0	Parent=Os06t0115400-02
Chr06	irgsp1_rep	CDS	865874	866107	.	-	0	Parent=Os06t0115400-02
Chr06	irgsp1_rep	three_prime_UTR	865679	865873	.	-	.	Parent=Os06t0115400-02
Chr06	irgsp1_rep	three_prime_UTR	865447	865565	.	-	.	Parent=Os06t0115400-02
Chr06	irgsp1_rep	three_prime_UTR	865245	865271	.	-	.	Parent=Os06t0115400-02
Chr06	irgsp1_rep	three_prime_UTR	865129	865152	.	-	.	Parent=Os06t0115400-02
Chr06	irgsp1_rep	three_prime_UTR	864345	865044	.	-	.	Parent=Os06t0115400-02
Chr06	irgsp1_rep	mRNA	867525	869809	.	-	.	ID=Os06t0115500-01;Name=Os06t0115500-01;Locus_id=Os06g0115500;Note=Similar to 60S ribosomal protein L13 (BBC1 protein homolog).;Transcript_evidence=AK070995 (DDBJ%2C Best hit);ORF_evidence=A2Y8K1 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L13e (IPR001380),Ribosomal protein L13e%2C conserved site (IPR018256);NIAS_FLcDNA=J023078L22;Expression=AK070995;TENOR=Os06t0115500-01;KEGG=Os06t0115500-01
Chr06	irgsp1_rep	five_prime_UTR	869746	869809	.	-	.	Parent=Os06t0115500-01
Chr06	irgsp1_rep	five_prime_UTR	869333	869344	.	-	.	Parent=Os06t0115500-01
Chr06	irgsp1_rep	CDS	869224	869332	.	-	0	Parent=Os06t0115500-01
Chr06	irgsp1_rep	CDS	868314	868447	.	-	2	Parent=Os06t0115500-01
Chr06	irgsp1_rep	CDS	868034	868192	.	-	0	Parent=Os06t0115500-01
Chr06	irgsp1_rep	CDS	867727	867951	.	-	0	Parent=Os06t0115500-01
Chr06	irgsp1_rep	three_prime_UTR	867525	867726	.	-	.	Parent=Os06t0115500-01
Chr06	irgsp1_rep	mRNA	867711	868120	.	+	.	ID=Os06t0115550-00;Name=Os06t0115550-00;Locus_id=Os06g0115550;Note=Hypothetical gene.;Transcript_evidence=EU734565 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0115550-00;KEGG=Os06t0115550-00
Chr06	irgsp1_rep	five_prime_UTR	867711	867711	.	+	.	Parent=Os06t0115550-00
Chr06	irgsp1_rep	CDS	867712	867942	.	+	0	Parent=Os06t0115550-00
Chr06	irgsp1_rep	CDS	868025	868120	.	+	0	Parent=Os06t0115550-00
Chr06	irgsp1_rep	mRNA	871774	875187	.	+	.	ID=Os06t0115600-01;Name=Os06t0115600-01;Locus_id=Os06g0115600;RAP-DB Gene Symbol Synonym(s)=IPD3%2C OsIPD3%2C Osipd3%2C CYCLOPS%2C IPD3/CYCLOPS%2C OsCYCLOPS;RAP-DB Gene Name Synonym(s)=INTERACTING PROTEIN OF DMI 3%2C sativa DMI3 interacting protein%2C sativa interacting protein of DMI3%2C DMI3 interacting protein IPD3;CGSNL Gene Symbol=IPD3;CGSNL Gene Name=INTERACTING PROTEIN OF DMI 3;Oryzabase Gene Symbol Synonym(s)=OsIPD3%2C Osipd3%2C CYCLOPS%2C IPD3/CYCLOPS%2C OsCYCLOPS;Oryzabase Gene Name Synonym(s)=sativa DMI3 interacting protein%2C sativa interacting protein of DMI3%2C DMI3 interacting protein IPD3;Note=Plant-specific protein with a short C-terminal coiled-coil domain and a functional NLS%2C Common symbiosis signaling (SYM) pathway;Transcript_evidence=AK243034 (DDBJ),EF569223 (DDBJ);ORF_evidence=A9XMT5 (UniProt);NIAS_FLcDNA=J100006G07;Manual Curation=June 25%2C 2009;Literature_PMID=18852152,19074278,19033527,18794914;Oryzabase=8318;TENOR=Os06t0115600-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	871774	871779	.	+	.	Parent=Os06t0115600-01
Chr06	irgsp1_rep	CDS	871780	871971	.	+	0	Parent=Os06t0115600-01
Chr06	irgsp1_rep	CDS	872193	872239	.	+	0	Parent=Os06t0115600-01
Chr06	irgsp1_rep	CDS	872680	872817	.	+	1	Parent=Os06t0115600-01
Chr06	irgsp1_rep	CDS	872898	872946	.	+	1	Parent=Os06t0115600-01
Chr06	irgsp1_rep	CDS	873044	873096	.	+	0	Parent=Os06t0115600-01
Chr06	irgsp1_rep	CDS	873195	873847	.	+	1	Parent=Os06t0115600-01
Chr06	irgsp1_rep	CDS	873996	874042	.	+	2	Parent=Os06t0115600-01
Chr06	irgsp1_rep	CDS	874123	874168	.	+	0	Parent=Os06t0115600-01
Chr06	irgsp1_rep	CDS	874370	874415	.	+	2	Parent=Os06t0115600-01
Chr06	irgsp1_rep	CDS	874591	874719	.	+	1	Parent=Os06t0115600-01
Chr06	irgsp1_rep	CDS	874821	874941	.	+	1	Parent=Os06t0115600-01
Chr06	irgsp1_rep	three_prime_UTR	874942	875187	.	+	.	Parent=Os06t0115600-01
Chr06	irgsp1_rep	mRNA	875388	876368	.	-	.	ID=Os06t0115700-01;Name=Os06t0115700-01;Locus_id=Os06g0115700;Note=Conserved hypothetical protein.;Transcript_evidence=AK060414 (DDBJ%2C Best hit);ORF_evidence=B8B1M6 (UniProt);NIAS_FLcDNA=001-010-E09;Expression=AK060414;TENOR=Os06t0115700-01;KEGG=Os06t0115700-01
Chr06	irgsp1_rep	five_prime_UTR	876297	876368	.	-	.	Parent=Os06t0115700-01
Chr06	irgsp1_rep	CDS	876080	876296	.	-	0	Parent=Os06t0115700-01
Chr06	irgsp1_rep	CDS	875554	875852	.	-	2	Parent=Os06t0115700-01
Chr06	irgsp1_rep	three_prime_UTR	875388	875553	.	-	.	Parent=Os06t0115700-01
Chr06	irgsp1_rep	mRNA	875413	876367	.	-	.	ID=Os06t0115700-02;Name=Os06t0115700-02;Locus_id=Os06g0115700;Note=Hypothetical conserved gene.;Transcript_evidence=AK073098 (DDBJ%2C Best hit);ORF_evidence=Q8H663 (UniProt);NIAS_FLcDNA=J033003O07;Expression=AK073098;TENOR=Os06t0115700-02;KEGG=Os06t0115700-02
Chr06	irgsp1_rep	five_prime_UTR	876297	876367	.	-	.	Parent=Os06t0115700-02
Chr06	irgsp1_rep	CDS	875577	876296	.	-	0	Parent=Os06t0115700-02
Chr06	irgsp1_rep	three_prime_UTR	875413	875576	.	-	.	Parent=Os06t0115700-02
Chr06	irgsp1_rep	mRNA	877024	880442	.	-	.	ID=Os06t0115800-01;Name=Os06t0115800-01;Locus_id=Os06g0115800;Note=Hypothetical conserved gene.;Transcript_evidence=AK069560 (DDBJ%2C Best hit);ORF_evidence=Q5VRL0 (UniProt);NIAS_FLcDNA=J023020P18;Expression=AK069560;TENOR=Os06t0115800-01;KEGG=Os06t0115800-01
Chr06	irgsp1_rep	five_prime_UTR	878646	880442	.	-	.	Parent=Os06t0115800-01
Chr06	irgsp1_rep	CDS	878229	878645	.	-	0	Parent=Os06t0115800-01
Chr06	irgsp1_rep	three_prime_UTR	877024	878228	.	-	.	Parent=Os06t0115800-01
Chr06	irgsp1_rep	mRNA	876948	878501	.	-	.	ID=Os06t0115800-02;Name=Os06t0115800-02;Locus_id=Os06g0115800;Note=Conserved hypothetical protein.;Transcript_evidence=AK062240 (DDBJ%2C Best hit);ORF_evidence=Q5VRL0 (UniProt);NIAS_FLcDNA=001-047-E07;Expression=AK062240;TENOR=Os06t0115800-02;KEGG=Os06t0115800-02
Chr06	irgsp1_rep	CDS	878295	878501	.	-	0	Parent=Os06t0115800-02
Chr06	irgsp1_rep	CDS	877212	877856	.	-	0	Parent=Os06t0115800-02
Chr06	irgsp1_rep	three_prime_UTR	876948	877211	.	-	.	Parent=Os06t0115800-02
Chr06	irgsp1_rep	mRNA	885834	892451	.	+	.	ID=Os06t0116100-01;Name=Os06t0116100-01;Locus_id=Os06g0116100;Note=Hypothetical protein.;Transcript_evidence=AK069526 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J023025B11;TENOR=Os06t0116100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	885834	885835	.	+	.	Parent=Os06t0116100-01
Chr06	irgsp1_rep	CDS	885836	885998	.	+	0	Parent=Os06t0116100-01
Chr06	irgsp1_rep	CDS	886973	887145	.	+	2	Parent=Os06t0116100-01
Chr06	irgsp1_rep	three_prime_UTR	887146	887380	.	+	.	Parent=Os06t0116100-01
Chr06	irgsp1_rep	three_prime_UTR	887463	887593	.	+	.	Parent=Os06t0116100-01
Chr06	irgsp1_rep	three_prime_UTR	887720	887905	.	+	.	Parent=Os06t0116100-01
Chr06	irgsp1_rep	three_prime_UTR	888028	888106	.	+	.	Parent=Os06t0116100-01
Chr06	irgsp1_rep	three_prime_UTR	888389	888457	.	+	.	Parent=Os06t0116100-01
Chr06	irgsp1_rep	three_prime_UTR	888546	888635	.	+	.	Parent=Os06t0116100-01
Chr06	irgsp1_rep	three_prime_UTR	888724	888862	.	+	.	Parent=Os06t0116100-01
Chr06	irgsp1_rep	three_prime_UTR	889465	889567	.	+	.	Parent=Os06t0116100-01
Chr06	irgsp1_rep	three_prime_UTR	889663	889715	.	+	.	Parent=Os06t0116100-01
Chr06	irgsp1_rep	three_prime_UTR	889800	889866	.	+	.	Parent=Os06t0116100-01
Chr06	irgsp1_rep	three_prime_UTR	890146	890254	.	+	.	Parent=Os06t0116100-01
Chr06	irgsp1_rep	three_prime_UTR	890340	890405	.	+	.	Parent=Os06t0116100-01
Chr06	irgsp1_rep	three_prime_UTR	890498	890566	.	+	.	Parent=Os06t0116100-01
Chr06	irgsp1_rep	three_prime_UTR	890675	890744	.	+	.	Parent=Os06t0116100-01
Chr06	irgsp1_rep	three_prime_UTR	890832	890951	.	+	.	Parent=Os06t0116100-01
Chr06	irgsp1_rep	three_prime_UTR	891051	891200	.	+	.	Parent=Os06t0116100-01
Chr06	irgsp1_rep	three_prime_UTR	891610	892451	.	+	.	Parent=Os06t0116100-01
Chr06	irgsp1_rep	mRNA	893174	896356	.	-	.	ID=Os06t0116200-01;Name=Os06t0116200-01;Locus_id=Os06g0116200;RAP-DB Gene Symbol Synonym(s)=OsGRF5;RAP-DB Gene Name Synonym(s)=GROWTH-REGULATING FACTOR 5;CGSNL Gene Symbol=GRF5;CGSNL Gene Name=GROWTH-REGULATING FACTOR 5;Oryzabase Gene Symbol Synonym(s)=OsGRF5;Oryzabase Gene Name Synonym(s)=growth-regulating factor5;Note=Transcription factor;Transcript_evidence=AK103508;ORF_evidence=Q6AWY4;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: ATP binding (GO:0005524),Cellular Component: nucleus (GO:0005634);InterPro=Glutamine-Leucine-Glutamine%2C QLQ (IPR014978),WRC domain (IPR014977);NIAS_FLcDNA=J033131E19;Manual Curation=July 12%2C 2018;Literature_PMID=24532604;Oryzabase=10287
Chr06	irgsp1_rep	five_prime_UTR	896151	896356	.	-	.	Parent=Os06t0116200-01
Chr06	irgsp1_rep	CDS	895895	896150	.	-	0	Parent=Os06t0116200-01
Chr06	irgsp1_rep	CDS	895114	895456	.	-	2	Parent=Os06t0116200-01
Chr06	irgsp1_rep	CDS	893630	894069	.	-	1	Parent=Os06t0116200-01
Chr06	irgsp1_rep	CDS	893532	893539	.	-	2	Parent=Os06t0116200-01
Chr06	irgsp1_rep	three_prime_UTR	893174	893531	.	-	.	Parent=Os06t0116200-01
Chr06	irgsp1_rep	mRNA	902675	907076	.	-	.	ID=Os06t0116300-01;Name=Os06t0116300-01;Locus_id=Os06g0116300;Note=Similar to Syntaxin.;Transcript_evidence=AK243105 (DDBJ%2C Best hit);ORF_evidence=B4FBQ6 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: membrane (GO:0016020),Molecular Function: SNAP receptor activity (GO:0005484),Molecular Function: protein binding (GO:0005515);InterPro=Target SNARE coiled-coil domain (IPR000727),Syntaxin%2C N-terminal (IPR006011),Syntaxin/epimorphin%2C conserved site (IPR006012),t-SNARE (IPR010989);NIAS_FLcDNA=J100025O14;TENOR=Os06t0116300-01;KEGG=Os06t0116300-01
Chr06	irgsp1_rep	five_prime_UTR	906973	907076	.	-	.	Parent=Os06t0116300-01
Chr06	irgsp1_rep	CDS	906764	906972	.	-	0	Parent=Os06t0116300-01
Chr06	irgsp1_rep	CDS	906068	906344	.	-	1	Parent=Os06t0116300-01
Chr06	irgsp1_rep	CDS	905880	905969	.	-	0	Parent=Os06t0116300-01
Chr06	irgsp1_rep	CDS	905707	905790	.	-	0	Parent=Os06t0116300-01
Chr06	irgsp1_rep	CDS	904206	904283	.	-	0	Parent=Os06t0116300-01
Chr06	irgsp1_rep	CDS	904018	904083	.	-	0	Parent=Os06t0116300-01
Chr06	irgsp1_rep	CDS	903846	903926	.	-	0	Parent=Os06t0116300-01
Chr06	irgsp1_rep	CDS	903055	903162	.	-	0	Parent=Os06t0116300-01
Chr06	irgsp1_rep	three_prime_UTR	902675	903054	.	-	.	Parent=Os06t0116300-01
Chr06	irgsp1_rep	mRNA	908856	910322	.	-	.	ID=Os06t0116400-01;Name=Os06t0116400-01;Locus_id=Os06g0116400;RAP-DB Gene Symbol Synonym(s)=ZN%2C OsZN;RAP-DB Gene Name Synonym(s)=ZEBRA-NECROSIS;Oryzabase Gene Symbol Synonym(s)=ZN%2C OsZN;Oryzabase Gene Name Synonym(s)=ZEBRA-NECROSIS;Note=Thylakoid-bound protein%2C Photoprotection of developing chloroplast during early leaf development;Transcript_evidence=AK105979;ORF_evidence=Q8H658;NIAS_FLcDNA=001-205-F10;Manual Curation=October 6%2C 2020;Literature_PMID=20202171;Oryzabase=14283;TENOR=Os06t0116400-01;Subcellular location=thylakoid membrane (GO:0042651)
Chr06	irgsp1_rep	five_prime_UTR	910286	910322	.	-	.	Parent=Os06t0116400-01
Chr06	irgsp1_rep	CDS	910001	910285	.	-	0	Parent=Os06t0116400-01
Chr06	irgsp1_rep	CDS	908994	909812	.	-	0	Parent=Os06t0116400-01
Chr06	irgsp1_rep	three_prime_UTR	908856	908993	.	-	.	Parent=Os06t0116400-01
Chr06	irgsp1_rep	mRNA	908856	910292	.	-	.	ID=Os06t0116400-02;Name=Os06t0116400-02;Locus_id=Os06g0116400;Oryzabase Gene Symbol Synonym(s)=ZN%2C OsZN;Oryzabase Gene Name Synonym(s)=ZEBRA-NECROSIS;Note=Nickel/cobalt transporter%2C high-affinity domain containing protein.;Transcript_evidence=AK058327 (DDBJ%2C Best hit);ORF_evidence=NP_565394.1 (RefSeq);GO=Biological Process: metal ion transport (GO:0030001),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: metal ion binding (GO:0046872);InterPro=Nickel/cobalt transporter%2C high-affinity (IPR011541);NIAS_FLcDNA=001-014-B12;Oryzabase=14283;TENOR=Os06t0116400-02
Chr06	irgsp1_rep	five_prime_UTR	910286	910292	.	-	.	Parent=Os06t0116400-02
Chr06	irgsp1_rep	CDS	910001	910285	.	-	0	Parent=Os06t0116400-02
Chr06	irgsp1_rep	CDS	908994	909812	.	-	0	Parent=Os06t0116400-02
Chr06	irgsp1_rep	three_prime_UTR	908856	908993	.	-	.	Parent=Os06t0116400-02
Chr06	irgsp1_rep	mRNA	913426	921695	.	+	.	ID=Os06t0116500-01;Name=Os06t0116500-01;Locus_id=Os06g0116500;Note=Pleckstrin homology-type domain containing protein.;Transcript_evidence=AK068442 (DDBJ%2C Best hit);ORF_evidence=Q5K2M9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Pleckstrin homology domain (IPR001849),Lipid-binding START (IPR002913),Pleckstrin homology-type (IPR011993),START-like domain (IPR023393);NIAS_FLcDNA=J013157I02;Expression=AK068442;TENOR=Os06t0116500-01;KEGG=Os06t0116500-01
Chr06	irgsp1_rep	five_prime_UTR	913426	913676	.	+	.	Parent=Os06t0116500-01
Chr06	irgsp1_rep	CDS	913677	913958	.	+	0	Parent=Os06t0116500-01
Chr06	irgsp1_rep	CDS	914753	914827	.	+	0	Parent=Os06t0116500-01
Chr06	irgsp1_rep	CDS	915058	915111	.	+	0	Parent=Os06t0116500-01
Chr06	irgsp1_rep	CDS	915847	915912	.	+	0	Parent=Os06t0116500-01
Chr06	irgsp1_rep	CDS	916136	916235	.	+	0	Parent=Os06t0116500-01
Chr06	irgsp1_rep	CDS	916314	916373	.	+	2	Parent=Os06t0116500-01
Chr06	irgsp1_rep	CDS	916453	916569	.	+	2	Parent=Os06t0116500-01
Chr06	irgsp1_rep	CDS	916700	916740	.	+	2	Parent=Os06t0116500-01
Chr06	irgsp1_rep	CDS	916826	916926	.	+	0	Parent=Os06t0116500-01
Chr06	irgsp1_rep	CDS	917011	917106	.	+	1	Parent=Os06t0116500-01
Chr06	irgsp1_rep	CDS	917518	917626	.	+	1	Parent=Os06t0116500-01
Chr06	irgsp1_rep	three_prime_UTR	917627	917734	.	+	.	Parent=Os06t0116500-01
Chr06	irgsp1_rep	three_prime_UTR	917827	917989	.	+	.	Parent=Os06t0116500-01
Chr06	irgsp1_rep	three_prime_UTR	918138	918367	.	+	.	Parent=Os06t0116500-01
Chr06	irgsp1_rep	three_prime_UTR	918471	918510	.	+	.	Parent=Os06t0116500-01
Chr06	irgsp1_rep	three_prime_UTR	918602	918735	.	+	.	Parent=Os06t0116500-01
Chr06	irgsp1_rep	three_prime_UTR	918829	918930	.	+	.	Parent=Os06t0116500-01
Chr06	irgsp1_rep	three_prime_UTR	919725	919769	.	+	.	Parent=Os06t0116500-01
Chr06	irgsp1_rep	three_prime_UTR	920224	920364	.	+	.	Parent=Os06t0116500-01
Chr06	irgsp1_rep	three_prime_UTR	920446	920541	.	+	.	Parent=Os06t0116500-01
Chr06	irgsp1_rep	three_prime_UTR	920731	920832	.	+	.	Parent=Os06t0116500-01
Chr06	irgsp1_rep	three_prime_UTR	921184	921695	.	+	.	Parent=Os06t0116500-01
Chr06	irgsp1_rep	mRNA	922217	925181	.	+	.	ID=Os06t0116600-01;Name=Os06t0116600-01;Locus_id=Os06g0116600;CGSNL Gene Symbol=MORF2;CGSNL Gene Name=MULTIPLE ORGANELLAR RNA EDITING FACTOR 2;Oryzabase Gene Symbol Synonym(s)=OsMORF2%2C OsMORF2a%2C MORF2a;Oryzabase Gene Name Synonym(s)=multiple organellar RNA editing factor 2;Note=Proteinase inhibitor%2C propeptide domain containing protein.;Transcript_evidence=AK103500 (DDBJ%2C Best hit);ORF_evidence=NP_001150208.1 (RefSeq);NIAS_FLcDNA=J033131B10;Oryzabase=22395;Expression=AK103500;TENOR=Os06t0116600-01;KEGG=Os06t0116600-01
Chr06	irgsp1_rep	five_prime_UTR	922217	922260	.	+	.	Parent=Os06t0116600-01
Chr06	irgsp1_rep	CDS	922261	922304	.	+	0	Parent=Os06t0116600-01
Chr06	irgsp1_rep	CDS	922491	922637	.	+	1	Parent=Os06t0116600-01
Chr06	irgsp1_rep	CDS	922759	922856	.	+	1	Parent=Os06t0116600-01
Chr06	irgsp1_rep	CDS	922966	923031	.	+	2	Parent=Os06t0116600-01
Chr06	irgsp1_rep	CDS	924814	924956	.	+	2	Parent=Os06t0116600-01
Chr06	irgsp1_rep	three_prime_UTR	924957	925181	.	+	.	Parent=Os06t0116600-01
Chr06	irgsp1_rep	mRNA	927344	932583	.	-	.	ID=Os06t0116800-01;Name=Os06t0116800-01;Locus_id=Os06g0116800;Oryzabase Gene Symbol Synonym(s)=OsDjA9;Oryzabase Gene Name Synonym(s)=DnaJ domain protein A9;Note=Similar to GFA2.;Transcript_evidence=AK058985 (DDBJ%2C Best hit);ORF_evidence=B6TA99 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: response to heat (GO:0009408),Molecular Function: ATP binding (GO:0005524),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C cysteine-rich domain (IPR001305),Heat shock protein DnaJ%2C N-terminal (IPR001623),Chaperone DnaJ%2C C-terminal (IPR002939),Heat shock protein DnaJ (IPR003095),HSP40/DnaJ peptide-binding (IPR008971),Chaperone DnaJ (IPR012724),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=001-020-E06;Oryzabase=12146;Expression=AK058985;TENOR=Os06t0116800-01;KEGG=Os06t0116800-01
Chr06	irgsp1_rep	five_prime_UTR	932524	932583	.	-	.	Parent=Os06t0116800-01
Chr06	irgsp1_rep	CDS	932409	932523	.	-	0	Parent=Os06t0116800-01
Chr06	irgsp1_rep	CDS	932216	932299	.	-	2	Parent=Os06t0116800-01
Chr06	irgsp1_rep	CDS	932017	932108	.	-	2	Parent=Os06t0116800-01
Chr06	irgsp1_rep	CDS	931451	931534	.	-	0	Parent=Os06t0116800-01
Chr06	irgsp1_rep	CDS	931323	931361	.	-	0	Parent=Os06t0116800-01
Chr06	irgsp1_rep	CDS	930833	930958	.	-	0	Parent=Os06t0116800-01
Chr06	irgsp1_rep	CDS	930371	930421	.	-	0	Parent=Os06t0116800-01
Chr06	irgsp1_rep	CDS	930206	930293	.	-	0	Parent=Os06t0116800-01
Chr06	irgsp1_rep	CDS	930046	930110	.	-	2	Parent=Os06t0116800-01
Chr06	irgsp1_rep	CDS	929869	929943	.	-	0	Parent=Os06t0116800-01
Chr06	irgsp1_rep	CDS	929330	929402	.	-	0	Parent=Os06t0116800-01
Chr06	irgsp1_rep	CDS	929144	929235	.	-	2	Parent=Os06t0116800-01
Chr06	irgsp1_rep	CDS	928825	928896	.	-	0	Parent=Os06t0116800-01
Chr06	irgsp1_rep	CDS	928256	928312	.	-	0	Parent=Os06t0116800-01
Chr06	irgsp1_rep	CDS	928121	928169	.	-	0	Parent=Os06t0116800-01
Chr06	irgsp1_rep	CDS	927820	927886	.	-	2	Parent=Os06t0116800-01
Chr06	irgsp1_rep	CDS	927636	927735	.	-	1	Parent=Os06t0116800-01
Chr06	irgsp1_rep	three_prime_UTR	927344	927635	.	-	.	Parent=Os06t0116800-01
Chr06	irgsp1_rep	mRNA	927339	932550	.	-	.	ID=Os06t0116800-02;Name=Os06t0116800-02;Locus_id=Os06g0116800;Oryzabase Gene Symbol Synonym(s)=OsDjA9;Oryzabase Gene Name Synonym(s)=DnaJ domain protein A9;Note=Similar to GFA2.;Transcript_evidence=AK120746 (DDBJ%2C Best hit);ORF_evidence=B6TA99 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: response to heat (GO:0009408),Molecular Function: ATP binding (GO:0005524),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C cysteine-rich domain (IPR001305),Heat shock protein DnaJ%2C N-terminal (IPR001623),Chaperone DnaJ%2C C-terminal (IPR002939),Heat shock protein DnaJ (IPR003095),HSP40/DnaJ peptide-binding (IPR008971),Chaperone DnaJ (IPR012724),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=J023004K12;Oryzabase=12146;TENOR=Os06t0116800-02
Chr06	irgsp1_rep	five_prime_UTR	932524	932550	.	-	.	Parent=Os06t0116800-02
Chr06	irgsp1_rep	CDS	932409	932523	.	-	0	Parent=Os06t0116800-02
Chr06	irgsp1_rep	CDS	932216	932299	.	-	2	Parent=Os06t0116800-02
Chr06	irgsp1_rep	CDS	932017	932108	.	-	2	Parent=Os06t0116800-02
Chr06	irgsp1_rep	CDS	931451	931534	.	-	0	Parent=Os06t0116800-02
Chr06	irgsp1_rep	CDS	931323	931361	.	-	0	Parent=Os06t0116800-02
Chr06	irgsp1_rep	CDS	930833	930958	.	-	0	Parent=Os06t0116800-02
Chr06	irgsp1_rep	CDS	930371	930421	.	-	0	Parent=Os06t0116800-02
Chr06	irgsp1_rep	CDS	930206	930293	.	-	0	Parent=Os06t0116800-02
Chr06	irgsp1_rep	CDS	930046	930110	.	-	2	Parent=Os06t0116800-02
Chr06	irgsp1_rep	CDS	929869	929943	.	-	0	Parent=Os06t0116800-02
Chr06	irgsp1_rep	CDS	929330	929402	.	-	0	Parent=Os06t0116800-02
Chr06	irgsp1_rep	CDS	929144	929235	.	-	2	Parent=Os06t0116800-02
Chr06	irgsp1_rep	CDS	928825	928896	.	-	0	Parent=Os06t0116800-02
Chr06	irgsp1_rep	CDS	928256	928312	.	-	0	Parent=Os06t0116800-02
Chr06	irgsp1_rep	CDS	928121	928169	.	-	0	Parent=Os06t0116800-02
Chr06	irgsp1_rep	CDS	927820	927886	.	-	2	Parent=Os06t0116800-02
Chr06	irgsp1_rep	CDS	927636	927735	.	-	1	Parent=Os06t0116800-02
Chr06	irgsp1_rep	three_prime_UTR	927339	927635	.	-	.	Parent=Os06t0116800-02
Chr06	irgsp1_rep	mRNA	933238	934084	.	-	.	ID=Os06t0116900-01;Name=Os06t0116900-01;Locus_id=Os06g0116900;Note=Conserved hypothetical protein.;Transcript_evidence=AK063112 (DDBJ%2C Best hit);ORF_evidence=A2Y8L3 (UniProt);NIAS_FLcDNA=001-111-D09;Expression=AK063112;TENOR=Os06t0116900-01;KEGG=Os06t0116900-01
Chr06	irgsp1_rep	five_prime_UTR	934059	934084	.	-	.	Parent=Os06t0116900-01
Chr06	irgsp1_rep	CDS	933333	934058	.	-	0	Parent=Os06t0116900-01
Chr06	irgsp1_rep	three_prime_UTR	933238	933332	.	-	.	Parent=Os06t0116900-01
Chr06	irgsp1_rep	mRNA	937904	938638	.	-	.	ID=Os06t0116933-00;Name=Os06t0116933-00;Locus_id=Os06g0116933;Note=Conserved hypothetical protein.;Transcript_evidence=EU964353 (DDBJ);ORF_evidence=Q8H652 (UniProt);TENOR=Os06t0116933-00
Chr06	irgsp1_rep	CDS	937904	938638	.	-	0	Parent=Os06t0116933-00
Chr06	irgsp1_rep	mRNA	951353	952096	.	-	.	ID=Os06t0117101-01;Name=Os06t0117101-01;Locus_id=Os06g0117101;Note=Hypothetical gene.;Transcript_evidence=AK070750 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023067A07;Expression=AK070750;TENOR=Os06t0117101-01;KEGG=Os06t0117101-01
Chr06	irgsp1_rep	five_prime_UTR	952095	952096	.	-	.	Parent=Os06t0117101-01
Chr06	irgsp1_rep	CDS	951765	952094	.	-	0	Parent=Os06t0117101-01
Chr06	irgsp1_rep	three_prime_UTR	951353	951764	.	-	.	Parent=Os06t0117101-01
Chr06	irgsp1_rep	mRNA	959663	962343	.	-	.	ID=Os06t0117500-00;Name=Os06t0117500-00;Locus_id=Os06g0117500;Note=Hypothetical conserved gene.;Transcript_evidence=AK067271 (DDBJ%2C Secondary hit);ORF_evidence=B9FR86 (UniProt);Expression=AK067271;TENOR=Os06t0117500-00;KEGG=Os06t0117500-00
Chr06	irgsp1_rep	five_prime_UTR	962222	962343	.	-	.	Parent=Os06t0117500-00
Chr06	irgsp1_rep	CDS	960764	962221	.	-	0	Parent=Os06t0117500-00
Chr06	irgsp1_rep	three_prime_UTR	959663	960763	.	-	.	Parent=Os06t0117500-00
Chr06	irgsp1_rep	mRNA	972897	974332	.	+	.	ID=Os06t0117800-00;Name=Os06t0117800-00;Locus_id=Os06g0117800;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3B7U4 (UniProt);TENOR=Os06t0117800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	972897	973025	.	+	0	Parent=Os06t0117800-00
Chr06	irgsp1_rep	CDS	973107	973332	.	+	0	Parent=Os06t0117800-00
Chr06	irgsp1_rep	CDS	973399	973501	.	+	2	Parent=Os06t0117800-00
Chr06	irgsp1_rep	CDS	973518	973593	.	+	1	Parent=Os06t0117800-00
Chr06	irgsp1_rep	CDS	973709	974332	.	+	0	Parent=Os06t0117800-00
Chr06	irgsp1_rep	mRNA	973236	974050	.	-	.	ID=Os06t0117900-00;Name=Os06t0117900-00;Locus_id=Os06g0117900;Note=Non-protein coding transcript.;Transcript_evidence=BT019088 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0117900-00
Chr06	irgsp1_rep	exon	973733	974050	.	-	.	Parent=Os06t0117900-00
Chr06	irgsp1_rep	exon	973412	973615	.	-	.	Parent=Os06t0117900-00
Chr06	irgsp1_rep	exon	973236	973349	.	-	.	Parent=Os06t0117900-00
Chr06	irgsp1_rep	mRNA	978316	979447	.	-	.	ID=Os06t0118000-01;Name=Os06t0118000-01;Locus_id=Os06g0118000;Note=Peptidase A1 domain containing protein.;Transcript_evidence=AK061513 (DDBJ%2C Best hit);ORF_evidence=A2Y8M7 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=006-309-H02;TENOR=Os06t0118000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	979446	979447	.	-	.	Parent=Os06t0118000-01
Chr06	irgsp1_rep	CDS	978666	979445	.	-	0	Parent=Os06t0118000-01
Chr06	irgsp1_rep	three_prime_UTR	978316	978665	.	-	.	Parent=Os06t0118000-01
Chr06	irgsp1_rep	mRNA	978812	979691	.	+	.	ID=Os06t0118075-00;Name=Os06t0118075-00;Locus_id=Os06g0118075;Note=Hypothetical protein.;Transcript_evidence=EU947645 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0118075-00
Chr06	irgsp1_rep	five_prime_UTR	978812	978812	.	+	.	Parent=Os06t0118075-00
Chr06	irgsp1_rep	CDS	978813	979283	.	+	0	Parent=Os06t0118075-00
Chr06	irgsp1_rep	three_prime_UTR	979284	979691	.	+	.	Parent=Os06t0118075-00
Chr06	irgsp1_rep	mRNA	988961	989263	.	+	.	ID=Os06t0118150-00;Name=Os06t0118150-00;Locus_id=Os06g0118150;Note=Similar to OSIGBa0106P14.9 protein.;Transcript_evidence=AF099415 (DDBJ);ORF_evidence=Q01I21 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);TENOR=Os06t0118150-00;KEGG=Os06t0118150-00
Chr06	irgsp1_rep	CDS	988961	989263	.	+	0	Parent=Os06t0118150-00
Chr06	irgsp1_rep	mRNA	1003452	1006255	.	-	.	ID=Os06t0118301-00;Name=Os06t0118301-00;Locus_id=Os06g0118301;Note=Hypothetical conserved gene.;Transcript_evidence=AK063112 (DDBJ%2C Secondary hit);ORF_evidence=A2Y8L3 (UniProt);Expression=AK063112;TENOR=Os06t0118301-00;KEGG=Os06t0118301-00
Chr06	irgsp1_rep	five_prime_UTR	1006230	1006255	.	-	.	Parent=Os06t0118301-00
Chr06	irgsp1_rep	CDS	1006123	1006229	.	-	0	Parent=Os06t0118301-00
Chr06	irgsp1_rep	CDS	1003881	1004163	.	-	1	Parent=Os06t0118301-00
Chr06	irgsp1_rep	three_prime_UTR	1003452	1003880	.	-	.	Parent=Os06t0118301-00
Chr06	irgsp1_rep	mRNA	1009683	1011303	.	+	.	ID=Os06t0118600-01;Name=Os06t0118600-01;Locus_id=Os06g0118600;Note=Similar to Mov34/MPN/PAD-1 family protein.;Transcript_evidence=AK071942 (DDBJ%2C Best hit);ORF_evidence=Q53RR0 (UniProt);NIAS_FLcDNA=J013082G08;TENOR=Os06t0118600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	1009683	1010065	.	+	.	Parent=Os06t0118600-01
Chr06	irgsp1_rep	CDS	1010066	1010442	.	+	0	Parent=Os06t0118600-01
Chr06	irgsp1_rep	CDS	1010550	1010571	.	+	1	Parent=Os06t0118600-01
Chr06	irgsp1_rep	three_prime_UTR	1010572	1011303	.	+	.	Parent=Os06t0118600-01
Chr06	irgsp1_rep	mRNA	1011625	1014688	.	-	.	ID=Os06t0118700-01;Name=Os06t0118700-01;Locus_id=Os06g0118700;Note=Peptidase A1 domain containing protein.;Transcript_evidence=AK120738 (DDBJ%2C Best hit);ORF_evidence=A2Y8L7 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J023003I22;Expression=AK120738;TENOR=Os06t0118700-01;KEGG=Os06t0118700-01
Chr06	irgsp1_rep	five_prime_UTR	1014606	1014688	.	-	.	Parent=Os06t0118700-01
Chr06	irgsp1_rep	CDS	1014440	1014605	.	-	0	Parent=Os06t0118700-01
Chr06	irgsp1_rep	CDS	1013626	1013912	.	-	2	Parent=Os06t0118700-01
Chr06	irgsp1_rep	CDS	1011900	1012931	.	-	0	Parent=Os06t0118700-01
Chr06	irgsp1_rep	three_prime_UTR	1011625	1011899	.	-	.	Parent=Os06t0118700-01
Chr06	irgsp1_rep	mRNA	1011587	1014658	.	-	.	ID=Os06t0118700-02;Name=Os06t0118700-02;Locus_id=Os06g0118700;Note=Peptidase A1 domain containing protein.;Transcript_evidence=AK068441 (DDBJ%2C Best hit);ORF_evidence=A2Y8L7 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J013155J02;Expression=AK068441;TENOR=Os06t0118700-02;KEGG=Os06t0118700-02
Chr06	irgsp1_rep	five_prime_UTR	1014606	1014658	.	-	.	Parent=Os06t0118700-02
Chr06	irgsp1_rep	CDS	1014440	1014605	.	-	0	Parent=Os06t0118700-02
Chr06	irgsp1_rep	CDS	1013626	1013912	.	-	2	Parent=Os06t0118700-02
Chr06	irgsp1_rep	CDS	1011900	1012931	.	-	0	Parent=Os06t0118700-02
Chr06	irgsp1_rep	three_prime_UTR	1011587	1011899	.	-	.	Parent=Os06t0118700-02
Chr06	irgsp1_rep	mRNA	1025098	1025823	.	-	.	ID=Os06t0118800-00;Name=Os06t0118800-00;Locus_id=Os06g0118800;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001056630.1 (RefSeq);TENOR=Os06t0118800-00;KEGG=Os06t0118800-00
Chr06	irgsp1_rep	CDS	1025098	1025823	.	-	0	Parent=Os06t0118800-00
Chr06	irgsp1_rep	mRNA	1028678	1029546	.	+	.	ID=Os06t0118900-00;Name=Os06t0118900-00;Locus_id=Os06g0118900;Note=Hypothetical conserved gene.;Transcript_evidence=CT836195 (DDBJ%2C Best hit);ORF_evidence=Q5VPR4 (UniProt);TENOR=Os06t0118900-00;KEGG=Os06t0118900-00
Chr06	irgsp1_rep	five_prime_UTR	1028678	1028763	.	+	.	Parent=Os06t0118900-00
Chr06	irgsp1_rep	CDS	1028764	1029429	.	+	0	Parent=Os06t0118900-00
Chr06	irgsp1_rep	three_prime_UTR	1029430	1029546	.	+	.	Parent=Os06t0118900-00
Chr06	irgsp1_rep	mRNA	1039777	1040060	.	-	.	ID=Os06t0118950-00;Name=Os06t0118950-00;Locus_id=Os06g0118950;Note=Non-protein coding transcript.;Transcript_evidence=CT836312 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os06t0118950-00
Chr06	irgsp1_rep	exon	1039777	1040060	.	-	.	Parent=Os06t0118950-00
Chr06	irgsp1_rep	mRNA	1039996	1042719	.	+	.	ID=Os06t0119100-01;Name=Os06t0119100-01;Locus_id=Os06g0119100;Note=Protein of unknown function DUF594 family protein.;Transcript_evidence=AK065857 (DDBJ%2C Best hit);ORF_evidence=A2Y8M0 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);NIAS_FLcDNA=J013041P08;Expression=AK065857;TENOR=Os06t0119100-01;KEGG=Os06t0119100-01
Chr06	irgsp1_rep	five_prime_UTR	1039996	1040016	.	+	.	Parent=Os06t0119100-01
Chr06	irgsp1_rep	CDS	1040017	1042473	.	+	0	Parent=Os06t0119100-01
Chr06	irgsp1_rep	three_prime_UTR	1042474	1042719	.	+	.	Parent=Os06t0119100-01
Chr06	irgsp1_rep	mRNA	1040027	1042669	.	+	.	ID=Os06t0119100-02;Name=Os06t0119100-02;Locus_id=Os06g0119100;Note=Hypothetical conserved gene.;Transcript_evidence=AK099129 (DDBJ%2C Best hit);ORF_evidence=A2Y8M0 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);NIAS_FLcDNA=J023042G04;Expression=AK099129;TENOR=Os06t0119100-02;KEGG=Os06t0119100-02
Chr06	irgsp1_rep	five_prime_UTR	1040027	1040028	.	+	.	Parent=Os06t0119100-02
Chr06	irgsp1_rep	CDS	1040029	1042473	.	+	0	Parent=Os06t0119100-02
Chr06	irgsp1_rep	three_prime_UTR	1042474	1042669	.	+	.	Parent=Os06t0119100-02
Chr06	irgsp1_rep	mRNA	1044856	1045486	.	+	.	ID=Os06t0119200-00;Name=Os06t0119200-00;Locus_id=Os06g0119200;Note=Late embryogenesis abundant protein%2C LEA-14 domain containing protein.;Transcript_evidence=FP093145 (DDBJ);ORF_evidence=Q5VPR1 (UniProt);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);TENOR=Os06t0119200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	1044856	1044877	.	+	.	Parent=Os06t0119200-00
Chr06	irgsp1_rep	CDS	1044878	1045486	.	+	0	Parent=Os06t0119200-00
Chr06	irgsp1_rep	mRNA	1046029	1048726	.	-	.	ID=Os06t0119300-01;Name=Os06t0119300-01;Locus_id=Os06g0119300;Note=Protein of unknown function DUF594 family protein.;Transcript_evidence=AK067271 (DDBJ%2C Best hit);ORF_evidence=B9FR86 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);NIAS_FLcDNA=J013099C04;Expression=AK067271;TENOR=Os06t0119300-01;KEGG=Os06t0119300-01
Chr06	irgsp1_rep	five_prime_UTR	1048601	1048726	.	-	.	Parent=Os06t0119300-01
Chr06	irgsp1_rep	CDS	1046300	1048600	.	-	0	Parent=Os06t0119300-01
Chr06	irgsp1_rep	three_prime_UTR	1046029	1046299	.	-	.	Parent=Os06t0119300-01
Chr06	irgsp1_rep	mRNA	1063563	1066532	.	-	.	ID=Os06t0119600-01;Name=Os06t0119600-01;Locus_id=Os06g0119600;Note=Peptidase aspartic%2C catalytic domain containing protein.;Transcript_evidence=AK104685 (DDBJ%2C Best hit),AK066409 (DDBJ%2C Best hit);ORF_evidence=B8B1W5 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=001-036-C01,J013067G18;Expression=AK104685;TENOR=Os06t0119600-01;KEGG=Os06t0119600-01
Chr06	irgsp1_rep	five_prime_UTR	1066464	1066532	.	-	.	Parent=Os06t0119600-01
Chr06	irgsp1_rep	CDS	1066310	1066463	.	-	0	Parent=Os06t0119600-01
Chr06	irgsp1_rep	CDS	1065040	1065329	.	-	2	Parent=Os06t0119600-01
Chr06	irgsp1_rep	CDS	1063890	1064933	.	-	0	Parent=Os06t0119600-01
Chr06	irgsp1_rep	three_prime_UTR	1063563	1063889	.	-	.	Parent=Os06t0119600-01
Chr06	irgsp1_rep	mRNA	1064009	1064894	.	+	.	ID=Os06t0119700-00;Name=Os06t0119700-00;Locus_id=Os06g0119700;Note=Hypothetical protein.;Transcript_evidence=EU947645 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0119700-00
Chr06	irgsp1_rep	five_prime_UTR	1064009	1064564	.	+	.	Parent=Os06t0119700-00
Chr06	irgsp1_rep	CDS	1064565	1064843	.	+	0	Parent=Os06t0119700-00
Chr06	irgsp1_rep	three_prime_UTR	1064844	1064894	.	+	.	Parent=Os06t0119700-00
Chr06	irgsp1_rep	mRNA	1078397	1079053	.	-	.	ID=Os06t0119800-00;Name=Os06t0119800-00;Locus_id=Os06g0119800;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001056634.1 (RefSeq);TENOR=Os06t0119800-00;KEGG=Os06t0119800-00
Chr06	irgsp1_rep	CDS	1078397	1079053	.	-	0	Parent=Os06t0119800-00
Chr06	irgsp1_rep	mRNA	1079929	1080930	.	+	.	ID=Os06t0119900-01;Name=Os06t0119900-01;Locus_id=Os06g0119900;Note=Late embryogenesis abundant protein%2C LEA-14 domain containing protein.;Transcript_evidence=AK067782 (DDBJ%2C Best hit);ORF_evidence=A3B7V5 (UniProt);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=J013117L19;Expression=AK067782;TENOR=Os06t0119900-01;KEGG=Os06t0119900-01
Chr06	irgsp1_rep	five_prime_UTR	1079929	1080042	.	+	.	Parent=Os06t0119900-01
Chr06	irgsp1_rep	CDS	1080043	1080699	.	+	0	Parent=Os06t0119900-01
Chr06	irgsp1_rep	three_prime_UTR	1080700	1080930	.	+	.	Parent=Os06t0119900-01
Chr06	irgsp1_rep	mRNA	1081641	1082403	.	+	.	ID=Os06t0120050-00;Name=Os06t0120050-00;Locus_id=Os06g0120050;Note=Non-protein coding transcript.;Transcript_evidence=CT837706 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os06t0120050-00
Chr06	irgsp1_rep	exon	1081641	1082403	.	+	.	Parent=Os06t0120050-00
Chr06	irgsp1_rep	mRNA	1090058	1092625	.	+	.	ID=Os06t0120200-01;Name=Os06t0120200-01;Locus_id=Os06g0120200;Note=Protein of unknown function DUF594 family protein.;Transcript_evidence=AK066196 (DDBJ%2C Best hit);ORF_evidence=A2Y8N7 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);NIAS_FLcDNA=J013050O22;Expression=AK066196;TENOR=Os06t0120200-01;KEGG=Os06t0120200-01
Chr06	irgsp1_rep	five_prime_UTR	1090058	1090088	.	+	.	Parent=Os06t0120200-01
Chr06	irgsp1_rep	CDS	1090089	1092389	.	+	0	Parent=Os06t0120200-01
Chr06	irgsp1_rep	three_prime_UTR	1092390	1092625	.	+	.	Parent=Os06t0120200-01
Chr06	irgsp1_rep	mRNA	1093868	1094294	.	-	.	ID=Os06t0120466-00;Name=Os06t0120466-00;Locus_id=Os06g0120466;Note=Hypothetical protein.;Transcript_evidence=EU976986 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0120466-00
Chr06	irgsp1_rep	CDS	1093868	1094294	.	-	0	Parent=Os06t0120466-00
Chr06	irgsp1_rep	mRNA	1095998	1096504	.	-	.	ID=Os06t0120732-00;Name=Os06t0120732-00;Locus_id=Os06g0120732;Note=Similar to ATP synthase subunit beta (Fragment).;Transcript_evidence=ab initio prediction;ORF_evidence=B3SHD1 (UniProt);GO=Biological Process: ATP hydrolysis coupled proton transport (GO:0015991),Cellular Component: proton-transporting two-sector ATPase complex%2C catalytic domain (GO:0033178),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C catalyzing transmembrane movement of substances (GO:0016820);InterPro=ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C nucleotide-binding domain (IPR000194),ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C C-terminal (IPR000793),ATPase%2C alpha/beta subunit%2C nucleotide-binding domain%2C active site (IPR020003),ATPase%2C F1 complex beta subunit/V1 complex%2C C-terminal (IPR024034);TENOR=Os06t0120732-00
Chr06	irgsp1_rep	CDS	1095998	1096504	.	-	0	Parent=Os06t0120732-00
Chr06	irgsp1_rep	mRNA	1112553	1113188	.	+	.	ID=Os06t0121000-00;Name=Os06t0121000-00;Locus_id=Os06g0121000;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001174573.1 (RefSeq);TENOR=Os06t0121000-00;KEGG=Os06t0121000-00
Chr06	irgsp1_rep	CDS	1112553	1113188	.	+	0	Parent=Os06t0121000-00
Chr06	irgsp1_rep	mRNA	1125408	1127807	.	+	.	ID=Os06t0121200-00;Name=Os06t0121200-00;Locus_id=Os06g0121200;Note=Protein of unknown function DUF594 family protein.;Transcript_evidence=tplb0058f06 (Wheat FLcDNA);ORF_evidence=NP_001174574.1 (RefSeq);InterPro=Protein of unknown function DUF594 (IPR007658);TENOR=Os06t0121200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	1125408	1127804	.	+	0	Parent=Os06t0121200-00
Chr06	irgsp1_rep	three_prime_UTR	1127805	1127807	.	+	.	Parent=Os06t0121200-00
Chr06	irgsp1_rep	mRNA	1128839	1129801	.	-	.	ID=Os06t0121300-01;Name=Os06t0121300-01;Locus_id=Os06g0121300;Note=Conserved hypothetical protein.;Transcript_evidence=AK064715 (DDBJ%2C Best hit);ORF_evidence=A2Y8P2 (UniProt);NIAS_FLcDNA=002-118-D11;Expression=AK064715;TENOR=Os06t0121300-01;KEGG=Os06t0121300-01
Chr06	irgsp1_rep	five_prime_UTR	1129742	1129801	.	-	.	Parent=Os06t0121300-01
Chr06	irgsp1_rep	CDS	1129061	1129741	.	-	0	Parent=Os06t0121300-01
Chr06	irgsp1_rep	three_prime_UTR	1128839	1129060	.	-	.	Parent=Os06t0121300-01
Chr06	irgsp1_rep	mRNA	1132265	1132893	.	+	.	ID=Os06t0121400-00;Name=Os06t0121400-00;Locus_id=Os06g0121400;Note=Conserved hypothetical protein.;Transcript_evidence=FP093145 (DDBJ);ORF_evidence=Q5VQ88 (UniProt);TENOR=Os06t0121400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	1132265	1132266	.	+	.	Parent=Os06t0121400-00
Chr06	irgsp1_rep	CDS	1132267	1132866	.	+	0	Parent=Os06t0121400-00
Chr06	irgsp1_rep	three_prime_UTR	1132867	1132893	.	+	.	Parent=Os06t0121400-00
Chr06	irgsp1_rep	mRNA	1137134	1138629	.	+	.	ID=Os06t0121500-01;Name=Os06t0121500-01;Locus_id=Os06g0121500;Note=Peptidase A1 domain containing protein.;Transcript_evidence=AK058425 (DDBJ%2C Best hit);ORF_evidence=Q5VQ87 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=001-015-E01;Expression=AK058425;TENOR=Os06t0121500-01;KEGG=Os06t0121500-01
Chr06	irgsp1_rep	five_prime_UTR	1137134	1137146	.	+	.	Parent=Os06t0121500-01
Chr06	irgsp1_rep	CDS	1137147	1137315	.	+	0	Parent=Os06t0121500-01
Chr06	irgsp1_rep	CDS	1137423	1138582	.	+	2	Parent=Os06t0121500-01
Chr06	irgsp1_rep	three_prime_UTR	1138583	1138629	.	+	.	Parent=Os06t0121500-01
Chr06	irgsp1_rep	mRNA	1142305	1143174	.	-	.	ID=Os06t0121600-00;Name=Os06t0121600-00;Locus_id=Os06g0121600;Note=Conserved hypothetical protein.;Transcript_evidence=EU960106 (DDBJ);ORF_evidence=NP_001056684.2 (RefSeq);TENOR=Os06t0121600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	1142822	1143174	.	-	0	Parent=Os06t0121600-00
Chr06	irgsp1_rep	CDS	1142696	1142747	.	-	1	Parent=Os06t0121600-00
Chr06	irgsp1_rep	CDS	1142380	1142457	.	-	0	Parent=Os06t0121600-00
Chr06	irgsp1_rep	three_prime_UTR	1142305	1142379	.	-	.	Parent=Os06t0121600-00
Chr06	irgsp1_rep	mRNA	1143665	1144627	.	-	.	ID=Os06t0121650-01;Name=Os06t0121650-01;Locus_id=Os06g0121650;Note=Conserved hypothetical protein.;Transcript_evidence=AK064715 (DDBJ%2C Best hit);ORF_evidence=A2Y8P2 (UniProt);NIAS_FLcDNA=002-118-D11;Expression=AK064715;TENOR=Os06t0121650-01;KEGG=Os06t0121650-01
Chr06	irgsp1_rep	five_prime_UTR	1144568	1144627	.	-	.	Parent=Os06t0121650-01
Chr06	irgsp1_rep	CDS	1143887	1144567	.	-	0	Parent=Os06t0121650-01
Chr06	irgsp1_rep	three_prime_UTR	1143665	1143886	.	-	.	Parent=Os06t0121650-01
Chr06	irgsp1_rep	mRNA	1145595	1146183	.	+	.	ID=Os06t0121700-00;Name=Os06t0121700-00;Locus_id=Os06g0121700;Note=Conserved hypothetical protein.;Transcript_evidence=AK252656 (DDBJ);ORF_evidence=Q5VQ84 (UniProt);TENOR=Os06t0121700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	1145595	1145637	.	+	.	Parent=Os06t0121700-00
Chr06	irgsp1_rep	CDS	1145638	1146183	.	+	0	Parent=Os06t0121700-00
Chr06	irgsp1_rep	mRNA	1153499	1155128	.	+	.	ID=Os06t0121800-00;Name=Os06t0121800-00;Locus_id=Os06g0121800;Note=Hypothetical conserved gene.;Transcript_evidence=AK372301 (DDBJ);ORF_evidence=B8B1W8 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);TENOR=Os06t0121800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	1153499	1153551	.	+	.	Parent=Os06t0121800-00
Chr06	irgsp1_rep	CDS	1153552	1153720	.	+	0	Parent=Os06t0121800-00
Chr06	irgsp1_rep	CDS	1153828	1155128	.	+	2	Parent=Os06t0121800-00
Chr06	irgsp1_rep	mRNA	1153751	1155138	.	-	.	ID=Os06t0122001-01;Name=Os06t0122001-01;Locus_id=Os06g0122001;Note=Hypothetical protein.;Transcript_evidence=AK242323 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J075197H21;TENOR=Os06t0122001-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	1155138	1155138	.	-	.	Parent=Os06t0122001-01
Chr06	irgsp1_rep	CDS	1154103	1155137	.	-	0	Parent=Os06t0122001-01
Chr06	irgsp1_rep	three_prime_UTR	1153751	1154102	.	-	.	Parent=Os06t0122001-01
Chr06	irgsp1_rep	mRNA	1172581	1175250	.	+	.	ID=Os06t0122200-01;Name=Os06t0122200-01;Locus_id=Os06g0122200;Note=Protein of unknown function DUF594 domain containing protein.;Transcript_evidence=AK109712 (DDBJ%2C Best hit);ORF_evidence=A2Y8P7 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);NIAS_FLcDNA=002-145-H03;Expression=AK109712;TENOR=Os06t0122200-01;KEGG=Os06t0122200-01
Chr06	irgsp1_rep	five_prime_UTR	1172581	1172715	.	+	.	Parent=Os06t0122200-01
Chr06	irgsp1_rep	CDS	1172716	1175139	.	+	0	Parent=Os06t0122200-01
Chr06	irgsp1_rep	three_prime_UTR	1175140	1175250	.	+	.	Parent=Os06t0122200-01
Chr06	irgsp1_rep	mRNA	1191561	1192469	.	-	.	ID=Os06t0122500-01;Name=Os06t0122500-01;Locus_id=Os06g0122500;Note=Conserved hypothetical protein.;Transcript_evidence=AK108322 (DDBJ%2C Best hit);ORF_evidence=B8B1X0 (UniProt);NIAS_FLcDNA=002-141-H03;TENOR=Os06t0122500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	1192439	1192469	.	-	.	Parent=Os06t0122500-01
Chr06	irgsp1_rep	CDS	1191956	1192438	.	-	0	Parent=Os06t0122500-01
Chr06	irgsp1_rep	three_prime_UTR	1191561	1191955	.	-	.	Parent=Os06t0122500-01
Chr06	irgsp1_rep	mRNA	1194478	1199548	.	+	.	ID=Os06t0122600-00;Name=Os06t0122600-00;Locus_id=Os06g0122600;Note=Peptidase C48%2C SUMO/Sentrin/Ubl1 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001174577.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase C48%2C SUMO/Sentrin/Ubl1 (IPR003653);TENOR=Os06t0122600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	1194478	1195434	.	+	0	Parent=Os06t0122600-00
Chr06	irgsp1_rep	CDS	1195508	1195651	.	+	0	Parent=Os06t0122600-00
Chr06	irgsp1_rep	CDS	1195734	1195820	.	+	0	Parent=Os06t0122600-00
Chr06	irgsp1_rep	CDS	1195909	1196243	.	+	0	Parent=Os06t0122600-00
Chr06	irgsp1_rep	CDS	1196599	1196839	.	+	1	Parent=Os06t0122600-00
Chr06	irgsp1_rep	CDS	1196920	1196994	.	+	0	Parent=Os06t0122600-00
Chr06	irgsp1_rep	CDS	1197071	1197211	.	+	0	Parent=Os06t0122600-00
Chr06	irgsp1_rep	CDS	1197296	1197390	.	+	0	Parent=Os06t0122600-00
Chr06	irgsp1_rep	CDS	1197590	1197662	.	+	1	Parent=Os06t0122600-00
Chr06	irgsp1_rep	CDS	1197768	1198534	.	+	0	Parent=Os06t0122600-00
Chr06	irgsp1_rep	CDS	1198612	1198783	.	+	1	Parent=Os06t0122600-00
Chr06	irgsp1_rep	CDS	1198861	1198947	.	+	0	Parent=Os06t0122600-00
Chr06	irgsp1_rep	CDS	1199254	1199343	.	+	0	Parent=Os06t0122600-00
Chr06	irgsp1_rep	CDS	1199438	1199548	.	+	0	Parent=Os06t0122600-00
Chr06	irgsp1_rep	mRNA	1189074	1209114	.	-	.	ID=Os06t0122800-01;Name=Os06t0122800-01;Locus_id=Os06g0122800;Note=Hypothetical conserved gene.;Transcript_evidence=AK287864 (DDBJ%2C Best hit);ORF_evidence=NP_001041816.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase C48%2C SUMO/Sentrin/Ubl1 (IPR003653);NIAS_FLcDNA=J065200O17;TENOR=Os06t0122800-01;KEGG=Os06t0122800-01
Chr06	irgsp1_rep	five_prime_UTR	1208520	1209114	.	-	.	Parent=Os06t0122800-01
Chr06	irgsp1_rep	five_prime_UTR	1208302	1208447	.	-	.	Parent=Os06t0122800-01
Chr06	irgsp1_rep	five_prime_UTR	1207034	1208091	.	-	.	Parent=Os06t0122800-01
Chr06	irgsp1_rep	five_prime_UTR	1206902	1206955	.	-	.	Parent=Os06t0122800-01
Chr06	irgsp1_rep	five_prime_UTR	1206692	1206731	.	-	.	Parent=Os06t0122800-01
Chr06	irgsp1_rep	five_prime_UTR	1191150	1191522	.	-	.	Parent=Os06t0122800-01
Chr06	irgsp1_rep	five_prime_UTR	1190636	1190642	.	-	.	Parent=Os06t0122800-01
Chr06	irgsp1_rep	CDS	1190609	1190635	.	-	0	Parent=Os06t0122800-01
Chr06	irgsp1_rep	CDS	1190454	1190528	.	-	0	Parent=Os06t0122800-01
Chr06	irgsp1_rep	CDS	1190239	1190379	.	-	0	Parent=Os06t0122800-01
Chr06	irgsp1_rep	CDS	1190060	1190154	.	-	0	Parent=Os06t0122800-01
Chr06	irgsp1_rep	CDS	1189788	1189860	.	-	1	Parent=Os06t0122800-01
Chr06	irgsp1_rep	CDS	1189670	1189690	.	-	0	Parent=Os06t0122800-01
Chr06	irgsp1_rep	three_prime_UTR	1189074	1189669	.	-	.	Parent=Os06t0122800-01
Chr06	irgsp1_rep	mRNA	1187781	1191556	.	-	.	ID=Os06t0122800-02;Name=Os06t0122800-02;Locus_id=Os06g0122800;Note=Hypothetical conserved gene.;Transcript_evidence=AK289091 (DDBJ%2C Best hit);ORF_evidence=NP_001041816.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase C48%2C SUMO/Sentrin/Ubl1 (IPR003653);NIAS_FLcDNA=J090096A14;TENOR=Os06t0122800-02;KEGG=Os06t0122800-02
Chr06	irgsp1_rep	five_prime_UTR	1190636	1191556	.	-	.	Parent=Os06t0122800-02
Chr06	irgsp1_rep	CDS	1190609	1190635	.	-	0	Parent=Os06t0122800-02
Chr06	irgsp1_rep	CDS	1190454	1190528	.	-	0	Parent=Os06t0122800-02
Chr06	irgsp1_rep	CDS	1190239	1190379	.	-	0	Parent=Os06t0122800-02
Chr06	irgsp1_rep	CDS	1190060	1190154	.	-	0	Parent=Os06t0122800-02
Chr06	irgsp1_rep	CDS	1189788	1189860	.	-	1	Parent=Os06t0122800-02
Chr06	irgsp1_rep	CDS	1189670	1189690	.	-	0	Parent=Os06t0122800-02
Chr06	irgsp1_rep	three_prime_UTR	1188916	1189669	.	-	.	Parent=Os06t0122800-02
Chr06	irgsp1_rep	three_prime_UTR	1188667	1188838	.	-	.	Parent=Os06t0122800-02
Chr06	irgsp1_rep	three_prime_UTR	1188503	1188589	.	-	.	Parent=Os06t0122800-02
Chr06	irgsp1_rep	three_prime_UTR	1188107	1188416	.	-	.	Parent=Os06t0122800-02
Chr06	irgsp1_rep	three_prime_UTR	1187781	1188012	.	-	.	Parent=Os06t0122800-02
Chr06	irgsp1_rep	mRNA	1218464	1219977	.	-	.	ID=Os06t0123000-01;Name=Os06t0123000-01;Locus_id=Os06g0123000;Note=Conserved hypothetical protein.;Transcript_evidence=AK108643 (DDBJ%2C Best hit);ORF_evidence=A2Y8Q3 (UniProt);NIAS_FLcDNA=002-148-A12;Expression=AK108643;TENOR=Os06t0123000-01;KEGG=Os06t0123000-01
Chr06	irgsp1_rep	five_prime_UTR	1219925	1219977	.	-	.	Parent=Os06t0123000-01
Chr06	irgsp1_rep	CDS	1219685	1219924	.	-	0	Parent=Os06t0123000-01
Chr06	irgsp1_rep	CDS	1218588	1219232	.	-	0	Parent=Os06t0123000-01
Chr06	irgsp1_rep	three_prime_UTR	1218464	1218587	.	-	.	Parent=Os06t0123000-01
Chr06	irgsp1_rep	mRNA	1289047	1291619	.	+	.	ID=Os06t0124300-01;Name=Os06t0124300-01;Locus_id=Os06g0124300;Note=Protein of unknown function DUF594 family protein.;Transcript_evidence=AK241426 (DDBJ%2C Best hit);ORF_evidence=NP_001174579.1 (RefSeq);InterPro=Protein of unknown function DUF594 (IPR007658);NIAS_FLcDNA=J065161M15;TENOR=Os06t0124300-01;KEGG=Os06t0124300-01
Chr06	irgsp1_rep	five_prime_UTR	1289047	1289105	.	+	.	Parent=Os06t0124300-01
Chr06	irgsp1_rep	CDS	1289106	1291475	.	+	0	Parent=Os06t0124300-01
Chr06	irgsp1_rep	three_prime_UTR	1291476	1291619	.	+	.	Parent=Os06t0124300-01
Chr06	irgsp1_rep	mRNA	1292193	1292815	.	+	.	ID=Os06t0124400-01;Name=Os06t0124400-01;Locus_id=Os06g0124400;Note=Conserved hypothetical protein.;Transcript_evidence=AK071790 (DDBJ%2C Best hit);ORF_evidence=A2Y8Q9 (UniProt);NIAS_FLcDNA=J023110B21;Expression=AK071790;TENOR=Os06t0124400-01;KEGG=Os06t0124400-01
Chr06	irgsp1_rep	five_prime_UTR	1292193	1292330	.	+	.	Parent=Os06t0124400-01
Chr06	irgsp1_rep	CDS	1292331	1292714	.	+	0	Parent=Os06t0124400-01
Chr06	irgsp1_rep	three_prime_UTR	1292715	1292815	.	+	.	Parent=Os06t0124400-01
Chr06	irgsp1_rep	mRNA	1341610	1344490	.	+	.	ID=Os06t0124900-01;Name=Os06t0124900-01;Locus_id=Os06g0124900;Note=Conserved hypothetical protein.;Transcript_evidence=AK062901 (DDBJ%2C Best hit);ORF_evidence=B9FR94 (UniProt);NIAS_FLcDNA=001-108-F04;TENOR=Os06t0124900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	1341610	1341703	.	+	.	Parent=Os06t0124900-01
Chr06	irgsp1_rep	CDS	1341704	1341802	.	+	0	Parent=Os06t0124900-01
Chr06	irgsp1_rep	CDS	1344112	1344189	.	+	0	Parent=Os06t0124900-01
Chr06	irgsp1_rep	three_prime_UTR	1344190	1344490	.	+	.	Parent=Os06t0124900-01
Chr06	irgsp1_rep	mRNA	1347280	1351207	.	-	.	ID=Os06t0125000-00;Name=Os06t0125000-00;Locus_id=Os06g0125000;Note=Similar to NBS-LRR disease resistance protein homologue.;Transcript_evidence=AJ507094 (DDBJ);ORF_evidence=Q84KC5 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os06t0125000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	1351184	1351207	.	-	.	Parent=Os06t0125000-00
Chr06	irgsp1_rep	CDS	1351068	1351183	.	-	0	Parent=Os06t0125000-00
Chr06	irgsp1_rep	CDS	1347280	1350187	.	-	1	Parent=Os06t0125000-00
Chr06	irgsp1_rep	mRNA	1356191	1358953	.	+	.	ID=Os06t0125132-00;Name=Os06t0125132-00;Locus_id=Os06g0125132;Note=Conserved hypothetical protein.;Transcript_evidence=CU406026 (DDBJ%2C Best hit);ORF_evidence=NP_001174580.1 (RefSeq);TENOR=Os06t0125132-00;KEGG=Os06t0125132-00
Chr06	irgsp1_rep	five_prime_UTR	1356191	1356194	.	+	.	Parent=Os06t0125132-00
Chr06	irgsp1_rep	CDS	1356195	1356293	.	+	0	Parent=Os06t0125132-00
Chr06	irgsp1_rep	CDS	1358629	1358706	.	+	0	Parent=Os06t0125132-00
Chr06	irgsp1_rep	three_prime_UTR	1358707	1358953	.	+	.	Parent=Os06t0125132-00
Chr06	irgsp1_rep	mRNA	1361368	1362505	.	+	.	ID=Os06t0125200-01;Name=Os06t0125200-01;Locus_id=Os06g0125200;Oryzabase Gene Name Synonym(s)=DUF581 domain- containing protein gene;Note=Protein of unknown function DUF581 family protein.;Transcript_evidence=AK102200 (DDBJ%2C Best hit);ORF_evidence=Q5VS44 (UniProt);InterPro=Protein of unknown function DUF581 (IPR007650);NIAS_FLcDNA=J033087E11;Oryzabase=22134;Expression=AK102200;TENOR=Os06t0125200-01;KEGG=Os06t0125200-01
Chr06	irgsp1_rep	five_prime_UTR	1361368	1361538	.	+	.	Parent=Os06t0125200-01
Chr06	irgsp1_rep	CDS	1361539	1361723	.	+	0	Parent=Os06t0125200-01
Chr06	irgsp1_rep	CDS	1361860	1362109	.	+	1	Parent=Os06t0125200-01
Chr06	irgsp1_rep	three_prime_UTR	1362110	1362505	.	+	.	Parent=Os06t0125200-01
Chr06	irgsp1_rep	mRNA	1362999	1367251	.	+	.	ID=Os06t0125300-01;Name=Os06t0125300-01;Locus_id=Os06g0125300;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK072112 (DDBJ%2C Best hit);ORF_evidence=A2Y8R4 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J013121K07;Expression=AK072112;TENOR=Os06t0125300-01;KEGG=Os06t0125300-01
Chr06	irgsp1_rep	five_prime_UTR	1362999	1363099	.	+	.	Parent=Os06t0125300-01
Chr06	irgsp1_rep	CDS	1363100	1364707	.	+	0	Parent=Os06t0125300-01
Chr06	irgsp1_rep	three_prime_UTR	1364708	1364875	.	+	.	Parent=Os06t0125300-01
Chr06	irgsp1_rep	three_prime_UTR	1366517	1367251	.	+	.	Parent=Os06t0125300-01
Chr06	irgsp1_rep	mRNA	1363240	1364866	.	+	.	ID=Os06t0125300-02;Name=Os06t0125300-02;Locus_id=Os06g0125300;Note=Hypothetical conserved gene.;Transcript_evidence=AK109698 (DDBJ%2C Best hit);ORF_evidence=A2Y8R4 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=002-145-F03;Expression=AK109698;TENOR=Os06t0125300-02;KEGG=Os06t0125300-02
Chr06	irgsp1_rep	five_prime_UTR	1363240	1363240	.	+	.	Parent=Os06t0125300-02
Chr06	irgsp1_rep	CDS	1363241	1364707	.	+	0	Parent=Os06t0125300-02
Chr06	irgsp1_rep	three_prime_UTR	1364708	1364866	.	+	.	Parent=Os06t0125300-02
Chr06	irgsp1_rep	mRNA	1365218	1368983	.	-	.	ID=Os06t0125400-00;Name=Os06t0125400-00;Locus_id=Os06g0125400;Oryzabase Gene Symbol Synonym(s)=OsOPT2;Oryzabase Gene Name Synonym(s)=Oligopeptide transporter 2;Note=Similar to Oligopeptide transporter 9.;Transcript_evidence=ab initio prediction;ORF_evidence=B6SVF4 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085);InterPro=Tetrapeptide transporter%2C OPT1/isp4 (IPR004648),Oligopeptide transporter OPT superfamily (IPR004813);Oryzabase=12495;TENOR=Os06t0125400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	1368905	1368983	.	-	0	Parent=Os06t0125400-00
Chr06	irgsp1_rep	CDS	1368343	1368815	.	-	2	Parent=Os06t0125400-00
Chr06	irgsp1_rep	CDS	1368065	1368177	.	-	0	Parent=Os06t0125400-00
Chr06	irgsp1_rep	CDS	1366550	1367119	.	-	1	Parent=Os06t0125400-00
Chr06	irgsp1_rep	CDS	1366214	1366469	.	-	1	Parent=Os06t0125400-00
Chr06	irgsp1_rep	CDS	1365940	1366122	.	-	0	Parent=Os06t0125400-00
Chr06	irgsp1_rep	CDS	1365218	1365835	.	-	0	Parent=Os06t0125400-00
Chr06	irgsp1_rep	mRNA	1371852	1375438	.	-	.	ID=Os06t0125500-01;Name=Os06t0125500-01;Locus_id=Os06g0125500;Oryzabase Gene Symbol Synonym(s)=OsOPT3%2C OsGT1;Oryzabase Gene Name Synonym(s)=Oligopeptide transporter 3%2C glutathione transporter 1;Note=Similar to Oligopeptide transporter 9.;Transcript_evidence=AK072127 (DDBJ%2C Best hit);ORF_evidence=B6SVF4 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085);InterPro=Oligopeptide transporter OPT superfamily (IPR004813);NIAS_FLcDNA=J013124E13;Oryzabase=12496;Expression=AK072127;TENOR=Os06t0125500-01;KEGG=Os06t0125500-01
Chr06	irgsp1_rep	five_prime_UTR	1375402	1375438	.	-	.	Parent=Os06t0125500-01
Chr06	irgsp1_rep	CDS	1375278	1375401	.	-	0	Parent=Os06t0125500-01
Chr06	irgsp1_rep	CDS	1374663	1375135	.	-	2	Parent=Os06t0125500-01
Chr06	irgsp1_rep	CDS	1374409	1374528	.	-	0	Parent=Os06t0125500-01
Chr06	irgsp1_rep	three_prime_UTR	1372811	1374408	.	-	.	Parent=Os06t0125500-01
Chr06	irgsp1_rep	three_prime_UTR	1371852	1372705	.	-	.	Parent=Os06t0125500-01
Chr06	irgsp1_rep	mRNA	1371852	1375160	.	-	.	ID=Os06t0125500-02;Name=Os06t0125500-02;Locus_id=Os06g0125500;Oryzabase Gene Symbol Synonym(s)=OsOPT3%2C OsGT1;Oryzabase Gene Name Synonym(s)=Oligopeptide transporter 3%2C glutathione transporter 1;Note=Similar to Oligopeptide transporter 9.;Transcript_evidence=AK067671 (DDBJ%2C Best hit);ORF_evidence=B6SVF4 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085);InterPro=Oligopeptide transporter OPT superfamily (IPR004813);NIAS_FLcDNA=J013116J20;Oryzabase=12496;Expression=AK067671;TENOR=Os06t0125500-02;KEGG=Os06t0125500-02
Chr06	irgsp1_rep	five_prime_UTR	1375149	1375160	.	-	.	Parent=Os06t0125500-02
Chr06	irgsp1_rep	CDS	1374663	1375148	.	-	0	Parent=Os06t0125500-02
Chr06	irgsp1_rep	CDS	1374422	1374519	.	-	0	Parent=Os06t0125500-02
Chr06	irgsp1_rep	CDS	1373406	1373975	.	-	1	Parent=Os06t0125500-02
Chr06	irgsp1_rep	CDS	1373094	1373241	.	-	1	Parent=Os06t0125500-02
Chr06	irgsp1_rep	three_prime_UTR	1373068	1373093	.	-	.	Parent=Os06t0125500-02
Chr06	irgsp1_rep	three_prime_UTR	1372811	1372993	.	-	.	Parent=Os06t0125500-02
Chr06	irgsp1_rep	three_prime_UTR	1371852	1372705	.	-	.	Parent=Os06t0125500-02
Chr06	irgsp1_rep	mRNA	1371852	1375401	.	-	.	ID=Os06t0125500-03;Name=Os06t0125500-03;Locus_id=Os06g0125500;RAP-DB Gene Symbol Synonym(s)=OsGT1%2C OsOPT3;RAP-DB Gene Name Synonym(s)=glutathione transporter 1%2C Oligopeptide transporter 3;Oryzabase Gene Symbol Synonym(s)=OsOPT3%2C OsGT1;Oryzabase Gene Name Synonym(s)=Oligopeptide transporter 3%2C glutathione transporter 1;Note=Glutathione transporter%2C Transport of glutathione derivatives;Transcript_evidence=AF393848;ORF_evidence=Q7FU78;GO=Biological Process: transmembrane transport (GO:0055085);InterPro=Oligopeptide transporter%2C OPT superfamily (IPR004813),Tetrapeptide transporter%2C OPT1/isp4 (IPR004648);Manual Curation=May 2%2C 2014;Literature_PMID=14730075;Oryzabase=12496
Chr06	irgsp1_rep	five_prime_UTR	1375372	1375401	.	-	.	Parent=Os06t0125500-03
Chr06	irgsp1_rep	CDS	1375278	1375371	.	-	0	Parent=Os06t0125500-03
Chr06	irgsp1_rep	CDS	1374663	1375135	.	-	2	Parent=Os06t0125500-03
Chr06	irgsp1_rep	CDS	1374422	1374528	.	-	0	Parent=Os06t0125500-03
Chr06	irgsp1_rep	CDS	1373406	1373975	.	-	1	Parent=Os06t0125500-03
Chr06	irgsp1_rep	CDS	1373068	1373323	.	-	1	Parent=Os06t0125500-03
Chr06	irgsp1_rep	CDS	1372811	1372993	.	-	0	Parent=Os06t0125500-03
Chr06	irgsp1_rep	CDS	1372088	1372705	.	-	0	Parent=Os06t0125500-03
Chr06	irgsp1_rep	three_prime_UTR	1371852	1372087	.	-	.	Parent=Os06t0125500-03
Chr06	irgsp1_rep	mRNA	1377416	1379454	.	+	.	ID=Os06t0125600-01;Name=Os06t0125600-01;Locus_id=Os06g0125600;Note=Hypothetical conserved gene.;Transcript_evidence=AK241944 (DDBJ%2C Best hit);ORF_evidence=NP_001056652.2 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J075089B01;TENOR=Os06t0125600-01;KEGG=Os06t0125600-01
Chr06	irgsp1_rep	five_prime_UTR	1377416	1377615	.	+	.	Parent=Os06t0125600-01
Chr06	irgsp1_rep	CDS	1377616	1378557	.	+	0	Parent=Os06t0125600-01
Chr06	irgsp1_rep	CDS	1378784	1378849	.	+	0	Parent=Os06t0125600-01
Chr06	irgsp1_rep	three_prime_UTR	1378850	1379454	.	+	.	Parent=Os06t0125600-01
Chr06	irgsp1_rep	mRNA	1383405	1384884	.	-	.	ID=Os06t0125700-01;Name=Os06t0125700-01;Locus_id=Os06g0125700;Note=Hypothetical protein.;Transcript_evidence=AK106573 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-111-B01;Expression=AK106573;TENOR=Os06t0125700-01;KEGG=Os06t0125700-01
Chr06	irgsp1_rep	five_prime_UTR	1384815	1384884	.	-	.	Parent=Os06t0125700-01
Chr06	irgsp1_rep	CDS	1384530	1384814	.	-	0	Parent=Os06t0125700-01
Chr06	irgsp1_rep	three_prime_UTR	1384043	1384529	.	-	.	Parent=Os06t0125700-01
Chr06	irgsp1_rep	three_prime_UTR	1383405	1383893	.	-	.	Parent=Os06t0125700-01
Chr06	irgsp1_rep	mRNA	1383618	1385968	.	+	.	ID=Os06t0125800-01;Name=Os06t0125800-01;Locus_id=Os06g0125800;RAP-DB Gene Symbol Synonym(s)=OsBBI1;RAP-DB Gene Name Synonym(s)=BLAST AND BTH INDUCED 1;Oryzabase Gene Symbol Synonym(s)=OsBBI1;Oryzabase Gene Name Synonym(s)=BLAST AND BTH INDUCED 1;Note=RING finger protein with E3 ligase activity%2C Mediation of broad-spectrum disease resistance;Transcript_evidence=AK068302,AK104425;ORF_evidence=Q9LWV9;InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841);NIAS_FLcDNA=J013144A04,006-205-F10;Manual Curation=April 1%2C 2020;Literature_PMID=21221134;Oryzabase=14294;Expression=AK068302;TENOR=Os06t0125800-01;KEGG=Os06t0125800-01
Chr06	irgsp1_rep	five_prime_UTR	1383618	1383699	.	+	.	Parent=Os06t0125800-01
Chr06	irgsp1_rep	five_prime_UTR	1384027	1384072	.	+	.	Parent=Os06t0125800-01
Chr06	irgsp1_rep	CDS	1384073	1384222	.	+	0	Parent=Os06t0125800-01
Chr06	irgsp1_rep	CDS	1384429	1384672	.	+	0	Parent=Os06t0125800-01
Chr06	irgsp1_rep	CDS	1384791	1384858	.	+	2	Parent=Os06t0125800-01
Chr06	irgsp1_rep	CDS	1385043	1385090	.	+	0	Parent=Os06t0125800-01
Chr06	irgsp1_rep	CDS	1385187	1385311	.	+	0	Parent=Os06t0125800-01
Chr06	irgsp1_rep	CDS	1385460	1385568	.	+	1	Parent=Os06t0125800-01
Chr06	irgsp1_rep	CDS	1385784	1385825	.	+	0	Parent=Os06t0125800-01
Chr06	irgsp1_rep	three_prime_UTR	1385826	1385968	.	+	.	Parent=Os06t0125800-01
Chr06	irgsp1_rep	mRNA	1388040	1388391	.	+	.	ID=Os06t0125900-00;Name=Os06t0125900-00;Locus_id=Os06g0125900;Note=Hypothetical protein.;Transcript_evidence=AK357810 (DDBJ);ORF_evidence=GeneMark;TENOR=Os06t0125900-00
Chr06	irgsp1_rep	five_prime_UTR	1388040	1388040	.	+	.	Parent=Os06t0125900-00
Chr06	irgsp1_rep	CDS	1388041	1388391	.	+	0	Parent=Os06t0125900-00
Chr06	irgsp1_rep	mRNA	1389082	1395801	.	-	.	ID=Os06t0126000-01;Name=Os06t0126000-01;Locus_id=Os06g0126000;CGSNL Gene Symbol=SEU3;CGSNL Gene Name=SEUSS 3;Oryzabase Gene Symbol Synonym(s)=OsSEU3;Oryzabase Gene Name Synonym(s)=OsSEUSS 3;Note=LIM binding protein domain containing protein.;Transcript_evidence=AK100438 (DDBJ%2C Best hit);ORF_evidence=B8B1X7 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: transcription cofactor activity (GO:0003712);InterPro=LIM binding protein (IPR002691);NIAS_FLcDNA=J023088P13;Oryzabase=21875;TENOR=Os06t0126000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	1395668	1395801	.	-	.	Parent=Os06t0126000-01
Chr06	irgsp1_rep	CDS	1395653	1395667	.	-	0	Parent=Os06t0126000-01
Chr06	irgsp1_rep	CDS	1394378	1394579	.	-	0	Parent=Os06t0126000-01
Chr06	irgsp1_rep	CDS	1393824	1394293	.	-	2	Parent=Os06t0126000-01
Chr06	irgsp1_rep	CDS	1393610	1393738	.	-	0	Parent=Os06t0126000-01
Chr06	irgsp1_rep	CDS	1393192	1393240	.	-	0	Parent=Os06t0126000-01
Chr06	irgsp1_rep	CDS	1392327	1392541	.	-	2	Parent=Os06t0126000-01
Chr06	irgsp1_rep	CDS	1392151	1392219	.	-	0	Parent=Os06t0126000-01
Chr06	irgsp1_rep	CDS	1391586	1391686	.	-	0	Parent=Os06t0126000-01
Chr06	irgsp1_rep	CDS	1391345	1391438	.	-	1	Parent=Os06t0126000-01
Chr06	irgsp1_rep	CDS	1391059	1391128	.	-	0	Parent=Os06t0126000-01
Chr06	irgsp1_rep	CDS	1389601	1390571	.	-	2	Parent=Os06t0126000-01
Chr06	irgsp1_rep	three_prime_UTR	1389082	1389600	.	-	.	Parent=Os06t0126000-01
Chr06	irgsp1_rep	mRNA	1389403	1395801	.	-	.	ID=Os06t0126000-02;Name=Os06t0126000-02;Locus_id=Os06g0126000;CGSNL Gene Symbol=SEU3;CGSNL Gene Name=SEUSS 3;Oryzabase Gene Symbol Synonym(s)=OsSEU3;Oryzabase Gene Name Synonym(s)=OsSEUSS 3;Note=Hypothetical conserved gene.;Transcript_evidence=AK099098 (DDBJ%2C Best hit),AK069048 (DDBJ%2C Best hit);ORF_evidence=B9FR97 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: transcription cofactor activity (GO:0003712);InterPro=LIM binding protein (IPR002691);NIAS_FLcDNA=J023023I02,J023009M14;Oryzabase=21875;Expression=AK099098;TENOR=Os06t0126000-02;KEGG=Os06t0126000-02
Chr06	irgsp1_rep	five_prime_UTR	1395668	1395801	.	-	.	Parent=Os06t0126000-02
Chr06	irgsp1_rep	CDS	1395653	1395667	.	-	0	Parent=Os06t0126000-02
Chr06	irgsp1_rep	CDS	1393824	1394579	.	-	0	Parent=Os06t0126000-02
Chr06	irgsp1_rep	CDS	1393610	1393738	.	-	0	Parent=Os06t0126000-02
Chr06	irgsp1_rep	CDS	1393192	1393240	.	-	0	Parent=Os06t0126000-02
Chr06	irgsp1_rep	CDS	1392327	1392541	.	-	2	Parent=Os06t0126000-02
Chr06	irgsp1_rep	CDS	1392151	1392219	.	-	0	Parent=Os06t0126000-02
Chr06	irgsp1_rep	CDS	1391586	1391686	.	-	0	Parent=Os06t0126000-02
Chr06	irgsp1_rep	CDS	1391345	1391438	.	-	1	Parent=Os06t0126000-02
Chr06	irgsp1_rep	CDS	1391059	1391128	.	-	0	Parent=Os06t0126000-02
Chr06	irgsp1_rep	CDS	1389601	1390571	.	-	2	Parent=Os06t0126000-02
Chr06	irgsp1_rep	three_prime_UTR	1389403	1389600	.	-	.	Parent=Os06t0126000-02
Chr06	irgsp1_rep	mRNA	1389379	1393874	.	-	.	ID=Os06t0126000-04;Name=Os06t0126000-04;Locus_id=Os06g0126000;CGSNL Gene Symbol=SEU3;CGSNL Gene Name=SEUSS 3;Oryzabase Gene Symbol Synonym(s)=OsSEU3;Oryzabase Gene Name Synonym(s)=OsSEUSS 3;Note=Hypothetical conserved gene.;Transcript_evidence=AK060795 (DDBJ%2C Best hit);ORF_evidence=Q9LWV8 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: transcription cofactor activity (GO:0003712);InterPro=LIM binding protein (IPR002691);NIAS_FLcDNA=001-033-E09;Oryzabase=21875;Expression=AK060795;TENOR=Os06t0126000-04;KEGG=Os06t0126000-04
Chr06	irgsp1_rep	CDS	1393824	1393874	.	-	0	Parent=Os06t0126000-04
Chr06	irgsp1_rep	CDS	1393610	1393738	.	-	0	Parent=Os06t0126000-04
Chr06	irgsp1_rep	CDS	1393192	1393240	.	-	0	Parent=Os06t0126000-04
Chr06	irgsp1_rep	CDS	1392327	1392541	.	-	2	Parent=Os06t0126000-04
Chr06	irgsp1_rep	CDS	1392151	1392219	.	-	0	Parent=Os06t0126000-04
Chr06	irgsp1_rep	CDS	1391586	1391686	.	-	0	Parent=Os06t0126000-04
Chr06	irgsp1_rep	CDS	1391345	1391438	.	-	1	Parent=Os06t0126000-04
Chr06	irgsp1_rep	CDS	1391059	1391128	.	-	0	Parent=Os06t0126000-04
Chr06	irgsp1_rep	CDS	1389601	1390571	.	-	2	Parent=Os06t0126000-04
Chr06	irgsp1_rep	three_prime_UTR	1389379	1389600	.	-	.	Parent=Os06t0126000-04
Chr06	irgsp1_rep	mRNA	1389381	1392542	.	-	.	ID=Os06t0126000-05;Name=Os06t0126000-05;Locus_id=Os06g0126000;CGSNL Gene Symbol=SEU3;CGSNL Gene Name=SEUSS 3;Oryzabase Gene Symbol Synonym(s)=OsSEU3;Oryzabase Gene Name Synonym(s)=OsSEUSS 3;Note=Hypothetical conserved gene.;Transcript_evidence=AK119655 (DDBJ%2C Best hit);ORF_evidence=Q9LWV8 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: transcription cofactor activity (GO:0003712);InterPro=LIM binding protein (IPR002691);NIAS_FLcDNA=002-130-H03;Oryzabase=21875;Expression=AK119655;TENOR=Os06t0126000-05;KEGG=Os06t0126000-05
Chr06	irgsp1_rep	CDS	1392327	1392542	.	-	0	Parent=Os06t0126000-05
Chr06	irgsp1_rep	CDS	1392151	1392219	.	-	0	Parent=Os06t0126000-05
Chr06	irgsp1_rep	CDS	1391586	1391686	.	-	0	Parent=Os06t0126000-05
Chr06	irgsp1_rep	CDS	1391345	1391438	.	-	1	Parent=Os06t0126000-05
Chr06	irgsp1_rep	CDS	1391059	1391128	.	-	0	Parent=Os06t0126000-05
Chr06	irgsp1_rep	CDS	1389601	1390571	.	-	2	Parent=Os06t0126000-05
Chr06	irgsp1_rep	three_prime_UTR	1389381	1389600	.	-	.	Parent=Os06t0126000-05
Chr06	irgsp1_rep	mRNA	1389898	1394581	.	+	.	ID=Os06t0126050-00;Name=Os06t0126050-00;Locus_id=Os06g0126050;Note=Hypothetical protein.;Transcript_evidence=tplb0045i11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0126050-00
Chr06	irgsp1_rep	five_prime_UTR	1389898	1390512	.	+	.	Parent=Os06t0126050-00
Chr06	irgsp1_rep	five_prime_UTR	1390931	1391128	.	+	.	Parent=Os06t0126050-00
Chr06	irgsp1_rep	five_prime_UTR	1391345	1391429	.	+	.	Parent=Os06t0126050-00
Chr06	irgsp1_rep	five_prime_UTR	1391573	1391684	.	+	.	Parent=Os06t0126050-00
Chr06	irgsp1_rep	five_prime_UTR	1392149	1392219	.	+	.	Parent=Os06t0126050-00
Chr06	irgsp1_rep	five_prime_UTR	1392327	1392573	.	+	.	Parent=Os06t0126050-00
Chr06	irgsp1_rep	five_prime_UTR	1393592	1393737	.	+	.	Parent=Os06t0126050-00
Chr06	irgsp1_rep	five_prime_UTR	1393823	1394277	.	+	.	Parent=Os06t0126050-00
Chr06	irgsp1_rep	CDS	1394278	1394574	.	+	0	Parent=Os06t0126050-00
Chr06	irgsp1_rep	three_prime_UTR	1394575	1394581	.	+	.	Parent=Os06t0126050-00
Chr06	irgsp1_rep	mRNA	1398084	1401474	.	+	.	ID=Os06t0126100-01;Name=Os06t0126100-01;Locus_id=Os06g0126100;Note=ABC transporter%2C conserved site domain containing protein.;Transcript_evidence=AK119346 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-131-E03;Expression=AK119346;TENOR=Os06t0126100-01;KEGG=Os06t0126100-01
Chr06	irgsp1_rep	five_prime_UTR	1398084	1398400	.	+	.	Parent=Os06t0126100-01
Chr06	irgsp1_rep	CDS	1398401	1401172	.	+	0	Parent=Os06t0126100-01
Chr06	irgsp1_rep	three_prime_UTR	1401173	1401474	.	+	.	Parent=Os06t0126100-01
Chr06	irgsp1_rep	mRNA	1397921	1400968	.	-	.	ID=Os06t0126250-01;Name=Os06t0126250-01;Locus_id=Os06g0126250;RAP-DB Gene Symbol Synonym(s)=RLCK193%2C RUPO;RAP-DB Gene Name Synonym(s)=RECEPTOR-LIKE CYTOPLASMIC KINASE 193%2C Ruptured Pollen tube;CGSNL Gene Symbol=RLCK193;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 193;Oryzabase Gene Symbol Synonym(s)=OsRLCK193%2C OsCrRLK1L13;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 193%2C Catharanthus roseus receptor-like kinase1-like kinase 13;Note=Receptor-like kinase%2C A member of the Catharanthus roseus receptor-like kinase1-like (CrRLK1L) subfamily%2C Control of high-affinity potassium transporters%2C Regulation of pollen tube growth and integrity;Transcript_evidence=Inferred from literature;ORF_evidence=Q8H651;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Malectin-like carbohydrate-binding domain (IPR024788),Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine-threonine/tyrosine-protein kinase%2C catalytic domain (IPR001245),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);Manual Curation=June 27%2C 2017;Literature_PMID=27447945;Oryzabase=18892;TENOR=Os06t0126250-00;Subcellular location=apical plasma membrane (GO:0016324), vesicle (GO:0031982) [pollen tube]
Chr06	irgsp1_rep	CDS	1398431	1400968	.	-	0	Parent=Os06t0126250-01
Chr06	irgsp1_rep	three_prime_UTR	1397921	1398430	.	-	.	Parent=Os06t0126250-01
Chr06	irgsp1_rep	mRNA	1405687	1406281	.	-	.	ID=Os06t0126400-00;Name=Os06t0126400-00;Locus_id=Os06g0126400;Oryzabase Gene Symbol Synonym(s)=OsSTA167;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001056658.2 (RefSeq);Oryzabase=19451;TENOR=Os06t0126400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	1406015	1406281	.	-	0	Parent=Os06t0126400-00
Chr06	irgsp1_rep	CDS	1405687	1405791	.	-	0	Parent=Os06t0126400-00
Chr06	irgsp1_rep	mRNA	1414221	1416298	.	+	.	ID=Os06t0126500-01;Name=Os06t0126500-01;Locus_id=Os06g0126500;CGSNL Gene Symbol=BAG3;CGSNL Gene Name=BCL-2-ASSOCIATED ATHANOGENE 3;Oryzabase Gene Symbol Synonym(s)=OsBAG3;Oryzabase Gene Name Synonym(s)=Bcl-2-associated athanogene 3;Note=Ubiquitin domain containing protein.;Transcript_evidence=AK065197 (DDBJ%2C Best hit);ORF_evidence=NP_001149344.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: chaperone binding (GO:0051087);InterPro=Ubiquitin (IPR000626),BAG domain (IPR003103),Ubiquitin supergroup (IPR019955);NIAS_FLcDNA=J013002E17;Oryzabase=11555;Expression=AK065197;TENOR=Os06t0126500-01;KEGG=Os06t0126500-01
Chr06	irgsp1_rep	five_prime_UTR	1414221	1414495	.	+	.	Parent=Os06t0126500-01
Chr06	irgsp1_rep	CDS	1414496	1414793	.	+	0	Parent=Os06t0126500-01
Chr06	irgsp1_rep	CDS	1414882	1415138	.	+	2	Parent=Os06t0126500-01
Chr06	irgsp1_rep	CDS	1415240	1415386	.	+	0	Parent=Os06t0126500-01
Chr06	irgsp1_rep	CDS	1415486	1415803	.	+	0	Parent=Os06t0126500-01
Chr06	irgsp1_rep	three_prime_UTR	1415804	1416298	.	+	.	Parent=Os06t0126500-01
Chr06	irgsp1_rep	mRNA	1424822	1427394	.	+	.	ID=Os06t0127000-01;Name=Os06t0127000-01;Locus_id=Os06g0127000;CGSNL Gene Symbol=PEX11-5;CGSNL Gene Name=PEROXIN 11-5;Oryzabase Gene Symbol Synonym(s)=OsPEX11-5;Oryzabase Gene Name Synonym(s)=Peroxisomal membrane protein 11-5%2C Peroxin-11-5;Note=Peroxisomal biogenesis factor 11 family protein.;Transcript_evidence=AK061048 (DDBJ%2C Best hit);ORF_evidence=Q5VRJ8 (UniProt);GO=Biological Process: peroxisome fission (GO:0016559),Cellular Component: peroxisomal membrane (GO:0005778);InterPro=Peroxisomal biogenesis factor 11 (IPR008733);NIAS_FLcDNA=006-205-F12;Oryzabase=7186;Expression=AK061048;TENOR=Os06t0127000-01;KEGG=Os06t0127000-01
Chr06	irgsp1_rep	five_prime_UTR	1424822	1424944	.	+	.	Parent=Os06t0127000-01
Chr06	irgsp1_rep	five_prime_UTR	1425826	1425841	.	+	.	Parent=Os06t0127000-01
Chr06	irgsp1_rep	CDS	1425842	1426033	.	+	0	Parent=Os06t0127000-01
Chr06	irgsp1_rep	CDS	1426128	1426202	.	+	0	Parent=Os06t0127000-01
Chr06	irgsp1_rep	CDS	1426300	1426374	.	+	0	Parent=Os06t0127000-01
Chr06	irgsp1_rep	CDS	1426493	1426573	.	+	0	Parent=Os06t0127000-01
Chr06	irgsp1_rep	CDS	1426665	1426739	.	+	0	Parent=Os06t0127000-01
Chr06	irgsp1_rep	CDS	1426828	1427001	.	+	0	Parent=Os06t0127000-01
Chr06	irgsp1_rep	CDS	1427104	1427133	.	+	0	Parent=Os06t0127000-01
Chr06	irgsp1_rep	three_prime_UTR	1427134	1427394	.	+	.	Parent=Os06t0127000-01
Chr06	irgsp1_rep	mRNA	1424865	1427392	.	+	.	ID=Os06t0127000-02;Name=Os06t0127000-02;Locus_id=Os06g0127000;CGSNL Gene Symbol=PEX11-5;CGSNL Gene Name=PEROXIN 11-5;Oryzabase Gene Symbol Synonym(s)=OsPEX11-5;Oryzabase Gene Name Synonym(s)=Peroxisomal membrane protein 11-5%2C Peroxin-11-5;Note=Peroxisomal biogenesis factor 11 family protein.;Transcript_evidence=AK100014 (DDBJ%2C Best hit);ORF_evidence=Q5VRJ8 (UniProt);GO=Biological Process: peroxisome fission (GO:0016559),Cellular Component: peroxisomal membrane (GO:0005778);InterPro=Peroxisomal biogenesis factor 11 (IPR008733);NIAS_FLcDNA=J013142G20;Oryzabase=7186;Expression=AK100014;TENOR=Os06t0127000-02;KEGG=Os06t0127000-02
Chr06	irgsp1_rep	five_prime_UTR	1424865	1425841	.	+	.	Parent=Os06t0127000-02
Chr06	irgsp1_rep	CDS	1425842	1426033	.	+	0	Parent=Os06t0127000-02
Chr06	irgsp1_rep	CDS	1426128	1426202	.	+	0	Parent=Os06t0127000-02
Chr06	irgsp1_rep	CDS	1426300	1426374	.	+	0	Parent=Os06t0127000-02
Chr06	irgsp1_rep	CDS	1426493	1426573	.	+	0	Parent=Os06t0127000-02
Chr06	irgsp1_rep	CDS	1426665	1426739	.	+	0	Parent=Os06t0127000-02
Chr06	irgsp1_rep	CDS	1426828	1427001	.	+	0	Parent=Os06t0127000-02
Chr06	irgsp1_rep	CDS	1427104	1427133	.	+	0	Parent=Os06t0127000-02
Chr06	irgsp1_rep	three_prime_UTR	1427134	1427392	.	+	.	Parent=Os06t0127000-02
Chr06	irgsp1_rep	mRNA	1424867	1427456	.	+	.	ID=Os06t0127000-03;Name=Os06t0127000-03;Locus_id=Os06g0127000;CGSNL Gene Symbol=PEX11-5;CGSNL Gene Name=PEROXIN 11-5;Oryzabase Gene Symbol Synonym(s)=OsPEX11-5;Oryzabase Gene Name Synonym(s)=Peroxisomal membrane protein 11-5%2C Peroxin-11-5;Note=Peroxisomal biogenesis factor 11 family protein.;Transcript_evidence=AK100186 (DDBJ%2C Best hit),AK060186 (DDBJ%2C Best hit);ORF_evidence=Q5VRJ8 (UniProt);GO=Biological Process: peroxisome fission (GO:0016559),Cellular Component: peroxisomal membrane (GO:0005778);InterPro=Peroxisomal biogenesis factor 11 (IPR008733);NIAS_FLcDNA=J023033L15,001-001-D04;Oryzabase=7186;TENOR=Os06t0127000-03
Chr06	irgsp1_rep	five_prime_UTR	1424867	1424944	.	+	.	Parent=Os06t0127000-03
Chr06	irgsp1_rep	five_prime_UTR	1425826	1425841	.	+	.	Parent=Os06t0127000-03
Chr06	irgsp1_rep	CDS	1425842	1426033	.	+	0	Parent=Os06t0127000-03
Chr06	irgsp1_rep	CDS	1426128	1426202	.	+	0	Parent=Os06t0127000-03
Chr06	irgsp1_rep	CDS	1426300	1426374	.	+	0	Parent=Os06t0127000-03
Chr06	irgsp1_rep	CDS	1426493	1426573	.	+	0	Parent=Os06t0127000-03
Chr06	irgsp1_rep	CDS	1426665	1426739	.	+	0	Parent=Os06t0127000-03
Chr06	irgsp1_rep	CDS	1426828	1427001	.	+	0	Parent=Os06t0127000-03
Chr06	irgsp1_rep	CDS	1427104	1427133	.	+	0	Parent=Os06t0127000-03
Chr06	irgsp1_rep	three_prime_UTR	1427134	1427456	.	+	.	Parent=Os06t0127000-03
Chr06	irgsp1_rep	mRNA	1423797	1427678	.	+	.	ID=Os06t0127000-04;Name=Os06t0127000-04;Locus_id=Os06g0127000;RAP-DB Gene Symbol Synonym(s)=PEX11-5%2C OsPEX11-5;RAP-DB Gene Name Synonym(s)=PEROXIN 11-5%2C Peroxisomal membrane protein 11-5%2C Peroxin-11-5;CGSNL Gene Symbol=PEX11-5;CGSNL Gene Name=PEROXIN 11-5;Oryzabase Gene Symbol Synonym(s)=OsPEX11-5;Oryzabase Gene Name Synonym(s)=Peroxisomal membrane protein 11-5%2C Peroxin-11-5;Note=Peroxisomal protein%2C Response to abscisic acid (ABA)%2C hydrogen peroxide%2C and salt;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Biological Process: peroxisome fission (GO:0016559),Cellular Component: integral component of peroxisomal membrane (GO:0005779);InterPro=Peroxisomal biogenesis factor 11 (IPR008733);Manual Curation=October 5%2C 2016;Literature_PMID=18291602;Oryzabase=7186
Chr06	irgsp1_rep	CDS	1423797	1423828	.	+	0	Parent=Os06t0127000-04
Chr06	irgsp1_rep	CDS	1423988	1424238	.	+	1	Parent=Os06t0127000-04
Chr06	irgsp1_rep	CDS	1424668	1424944	.	+	2	Parent=Os06t0127000-04
Chr06	irgsp1_rep	CDS	1425826	1426033	.	+	1	Parent=Os06t0127000-04
Chr06	irgsp1_rep	CDS	1426128	1426202	.	+	0	Parent=Os06t0127000-04
Chr06	irgsp1_rep	CDS	1426300	1426374	.	+	0	Parent=Os06t0127000-04
Chr06	irgsp1_rep	CDS	1426493	1426573	.	+	0	Parent=Os06t0127000-04
Chr06	irgsp1_rep	CDS	1426665	1426739	.	+	0	Parent=Os06t0127000-04
Chr06	irgsp1_rep	CDS	1426828	1427001	.	+	0	Parent=Os06t0127000-04
Chr06	irgsp1_rep	CDS	1427104	1427133	.	+	0	Parent=Os06t0127000-04
Chr06	irgsp1_rep	three_prime_UTR	1427134	1427678	.	+	.	Parent=Os06t0127000-04
Chr06	irgsp1_rep	mRNA	1434770	1435533	.	+	.	ID=Os06t0127100-01;Name=Os06t0127100-01;Locus_id=Os06g0127100;CGSNL Gene Symbol=DREB1C;CGSNL Gene Name=DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1C;Oryzabase Gene Symbol Synonym(s)=OsDREB1C%2C CBF1%2C ERF26%2C OsERF026%2C OsERF#026%2C OsERF26%2C AP2/EREBP#098%2C AP2/EREBP98;Oryzabase Gene Name Synonym(s)=Dehydration-responsive element-binding protein 1C%2C Protein DREB1C%2C Protein C-repeat-binding factor 1%2C ethylene response factor 26%2C APETALA2/ethylene-responsive element binding protein 98;Note=Dehydration-responsive element-binding protein 1C.;Transcript_evidence=AY327040 (DDBJ%2C Best hit);ORF_evidence=Q9LWV3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);Oryzabase=3114;Expression=AY327040;TENOR=Os06t0127100-01;KEGG=Os06t0127100-01
Chr06	irgsp1_rep	five_prime_UTR	1434770	1434796	.	+	.	Parent=Os06t0127100-01
Chr06	irgsp1_rep	CDS	1434797	1435441	.	+	0	Parent=Os06t0127100-01
Chr06	irgsp1_rep	three_prime_UTR	1435442	1435533	.	+	.	Parent=Os06t0127100-01
Chr06	irgsp1_rep	mRNA	1438381	1445164	.	-	.	ID=Os06t0127200-01;Name=Os06t0127200-01;Locus_id=Os06g0127200;Note=SET domain containing protein.;Transcript_evidence=AK122004 (DDBJ%2C Best hit);ORF_evidence=NP_001030933.1 (RefSeq);NIAS_FLcDNA=J033110L01;Expression=AK122004;TENOR=Os06t0127200-01;KEGG=Os06t0127200-01
Chr06	irgsp1_rep	five_prime_UTR	1445131	1445164	.	-	.	Parent=Os06t0127200-01
Chr06	irgsp1_rep	CDS	1445059	1445130	.	-	0	Parent=Os06t0127200-01
Chr06	irgsp1_rep	CDS	1444883	1444979	.	-	0	Parent=Os06t0127200-01
Chr06	irgsp1_rep	CDS	1444620	1444794	.	-	2	Parent=Os06t0127200-01
Chr06	irgsp1_rep	CDS	1444443	1444548	.	-	1	Parent=Os06t0127200-01
Chr06	irgsp1_rep	CDS	1444263	1444342	.	-	0	Parent=Os06t0127200-01
Chr06	irgsp1_rep	CDS	1443470	1443502	.	-	1	Parent=Os06t0127200-01
Chr06	irgsp1_rep	CDS	1442864	1442996	.	-	1	Parent=Os06t0127200-01
Chr06	irgsp1_rep	CDS	1442019	1442136	.	-	0	Parent=Os06t0127200-01
Chr06	irgsp1_rep	CDS	1441732	1441812	.	-	2	Parent=Os06t0127200-01
Chr06	irgsp1_rep	CDS	1441545	1441609	.	-	2	Parent=Os06t0127200-01
Chr06	irgsp1_rep	CDS	1440788	1440844	.	-	0	Parent=Os06t0127200-01
Chr06	irgsp1_rep	CDS	1440243	1440314	.	-	0	Parent=Os06t0127200-01
Chr06	irgsp1_rep	CDS	1439876	1440121	.	-	0	Parent=Os06t0127200-01
Chr06	irgsp1_rep	CDS	1439160	1439263	.	-	0	Parent=Os06t0127200-01
Chr06	irgsp1_rep	CDS	1438968	1439060	.	-	1	Parent=Os06t0127200-01
Chr06	irgsp1_rep	CDS	1438692	1438833	.	-	1	Parent=Os06t0127200-01
Chr06	irgsp1_rep	three_prime_UTR	1438381	1438691	.	-	.	Parent=Os06t0127200-01
Chr06	irgsp1_rep	mRNA	1445601	1448079	.	+	.	ID=Os06t0127250-00;Name=Os06t0127250-00;Locus_id=Os06g0127250;Note=Hypothetical protein.;Transcript_evidence=tplb0041g05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0127250-00
Chr06	irgsp1_rep	five_prime_UTR	1445601	1445780	.	+	.	Parent=Os06t0127250-00
Chr06	irgsp1_rep	CDS	1445781	1446320	.	+	0	Parent=Os06t0127250-00
Chr06	irgsp1_rep	three_prime_UTR	1446321	1446460	.	+	.	Parent=Os06t0127250-00
Chr06	irgsp1_rep	three_prime_UTR	1447048	1447334	.	+	.	Parent=Os06t0127250-00
Chr06	irgsp1_rep	three_prime_UTR	1447422	1448079	.	+	.	Parent=Os06t0127250-00
Chr06	irgsp1_rep	mRNA	1445613	1448625	.	-	.	ID=Os06t0127300-01;Name=Os06t0127300-01;Locus_id=Os06g0127300;Note=Similar to Calcium-dependent protein kinase.;Transcript_evidence=AK058892 (DDBJ%2C Best hit);ORF_evidence=B6TYE6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-007-E08;Expression=AK058892;TENOR=Os06t0127300-01;KEGG=Os06t0127300-01 (EC:2.7.11.1)
Chr06	irgsp1_rep	CDS	1448530	1448625	.	-	0	Parent=Os06t0127300-01
Chr06	irgsp1_rep	CDS	1447044	1447182	.	-	0	Parent=Os06t0127300-01
Chr06	irgsp1_rep	CDS	1445809	1446458	.	-	2	Parent=Os06t0127300-01
Chr06	irgsp1_rep	three_prime_UTR	1445613	1445808	.	-	.	Parent=Os06t0127300-01
Chr06	irgsp1_rep	mRNA	1455368	1458543	.	+	.	ID=Os06t0127500-01;Name=Os06t0127500-01;Locus_id=Os06g0127500;Note=Hypothetical conserved gene.;Transcript_evidence=AK287849 (DDBJ%2C Best hit);ORF_evidence=B9FRA2 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J065195K18;TENOR=Os06t0127500-01;KEGG=Os06t0127500-01
Chr06	irgsp1_rep	five_prime_UTR	1455368	1455531	.	+	.	Parent=Os06t0127500-01
Chr06	irgsp1_rep	CDS	1455532	1455709	.	+	0	Parent=Os06t0127500-01
Chr06	irgsp1_rep	CDS	1456298	1456419	.	+	2	Parent=Os06t0127500-01
Chr06	irgsp1_rep	CDS	1456507	1456747	.	+	0	Parent=Os06t0127500-01
Chr06	irgsp1_rep	CDS	1456871	1456932	.	+	2	Parent=Os06t0127500-01
Chr06	irgsp1_rep	CDS	1457014	1457095	.	+	0	Parent=Os06t0127500-01
Chr06	irgsp1_rep	CDS	1458129	1458241	.	+	2	Parent=Os06t0127500-01
Chr06	irgsp1_rep	three_prime_UTR	1458242	1458261	.	+	.	Parent=Os06t0127500-01
Chr06	irgsp1_rep	three_prime_UTR	1458367	1458543	.	+	.	Parent=Os06t0127500-01
Chr06	irgsp1_rep	mRNA	1459668	1465202	.	-	.	ID=Os06t0127600-01;Name=Os06t0127600-01;Locus_id=Os06g0127600;Note=Similar to Glutathione transporter.;Transcript_evidence=AK073855 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033072D15;Expression=AK073855;TENOR=Os06t0127600-01;KEGG=Os06t0127600-01
Chr06	irgsp1_rep	five_prime_UTR	1464745	1465202	.	-	.	Parent=Os06t0127600-01
Chr06	irgsp1_rep	five_prime_UTR	1462619	1464202	.	-	.	Parent=Os06t0127600-01
Chr06	irgsp1_rep	five_prime_UTR	1461965	1462515	.	-	.	Parent=Os06t0127600-01
Chr06	irgsp1_rep	five_prime_UTR	1461177	1461320	.	-	.	Parent=Os06t0127600-01
Chr06	irgsp1_rep	five_prime_UTR	1460391	1460483	.	-	.	Parent=Os06t0127600-01
Chr06	irgsp1_rep	CDS	1459920	1460390	.	-	0	Parent=Os06t0127600-01
Chr06	irgsp1_rep	three_prime_UTR	1459668	1459919	.	-	.	Parent=Os06t0127600-01
Chr06	irgsp1_rep	mRNA	1459768	1464332	.	+	.	ID=Os06t0127700-01;Name=Os06t0127700-01;Locus_id=Os06g0127700;Oryzabase Gene Symbol Synonym(s)=OsOPT4;Oryzabase Gene Name Synonym(s)=Oligopeptide transporter 4;Note=Similar to Oligopeptide transporter 9.;Transcript_evidence=AK072617 (DDBJ%2C Best hit);ORF_evidence=B6SVF4 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085);InterPro=Tetrapeptide transporter%2C OPT1/isp4 (IPR004648),Oligopeptide transporter OPT superfamily (IPR004813);NIAS_FLcDNA=J023127G03;Oryzabase=12497;TENOR=Os06t0127700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	1459768	1459800	.	+	.	Parent=Os06t0127700-01
Chr06	irgsp1_rep	CDS	1459801	1459894	.	+	0	Parent=Os06t0127700-01
Chr06	irgsp1_rep	CDS	1460003	1460463	.	+	2	Parent=Os06t0127700-01
Chr06	irgsp1_rep	CDS	1460550	1460647	.	+	0	Parent=Os06t0127700-01
Chr06	irgsp1_rep	CDS	1461917	1462486	.	+	1	Parent=Os06t0127700-01
Chr06	irgsp1_rep	CDS	1462566	1462821	.	+	1	Parent=Os06t0127700-01
Chr06	irgsp1_rep	CDS	1462903	1463085	.	+	0	Parent=Os06t0127700-01
Chr06	irgsp1_rep	CDS	1463203	1463823	.	+	0	Parent=Os06t0127700-01
Chr06	irgsp1_rep	three_prime_UTR	1463824	1464332	.	+	.	Parent=Os06t0127700-01
Chr06	irgsp1_rep	mRNA	1465500	1468583	.	-	.	ID=Os06t0127800-01;Name=Os06t0127800-01;Locus_id=Os06g0127800;RAP-DB Gene Symbol Synonym(s)=DLT%2C dlt%2C OsGRAS32%2C OsDLT;RAP-DB Gene Name Synonym(s)=DWARF AND LOW-TILLERING;CGSNL Gene Symbol=DLT;CGSNL Gene Name=DWARF AND LOW-TILLERING;Oryzabase Gene Symbol Synonym(s)=dlt%2C OsGRAS32%2C OsDLT%2C OsDLT1%2C DTL1%2C OsGRAS-32%2C OsGRAS32%2C GRAS-32%2C GRAS32%2C SMOS2/DLT%2C SMOS2%2C OsSMOS2;Oryzabase Gene Name Synonym(s)=GRAS protein 32%2C SMALL ORGAN SIZE 2;Note=GAI-RGA-SCR (GRAS) family protein%2C Brassinosteroid signaling;Transcript_evidence=AK106449 (Genbank);ORF_evidence=Q9LWU9 (UniProt);InterPro=Transcription factor GRAS (IPR005202);NIAS_FLcDNA=002-103-E10;Manual Curation=July 22%2C 2009;Literature_PMID=15316287,19220793;Oryzabase=8504;Expression=AK106449;TENOR=Os06t0127800-01;KEGG=Os06t0127800-01
Chr06	irgsp1_rep	five_prime_UTR	1467814	1468583	.	-	.	Parent=Os06t0127800-01
Chr06	irgsp1_rep	CDS	1465960	1467813	.	-	0	Parent=Os06t0127800-01
Chr06	irgsp1_rep	three_prime_UTR	1465500	1465959	.	-	.	Parent=Os06t0127800-01
Chr06	irgsp1_rep	mRNA	1467515	1467778	.	+	.	ID=Os06t0127825-00;Name=Os06t0127825-00;Locus_id=Os06g0127825;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os06t0127825-00
Chr06	irgsp1_rep	CDS	1467515	1467778	.	+	0	Parent=Os06t0127825-00
Chr06	irgsp1_rep	mRNA	1470865	1472378	.	+	.	ID=Os06t0127900-01;Name=Os06t0127900-01;Locus_id=Os06g0127900;RAP-DB Gene Symbol Synonym(s)=RNRS2;RAP-DB Gene Name Synonym(s)=RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT 2;CGSNL Gene Symbol=RNRS2;CGSNL Gene Name=RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT 2;Note=Ribonucleotide reductase%2C Chloroplast biogenesis;Transcript_evidence=EU602347 (Genbank),AK073063 (Genbank);ORF_evidence=Q5VRJ6 (UniProt);GO=Biological Process: deoxyribonucleoside diphosphate metabolic process (GO:0009186),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: ribonucleoside-diphosphate reductase activity (GO:0004748),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: transition metal ion binding (GO:0046914);InterPro=Ribonucleotide reductase (IPR000358),Ferritin/ribonucleotide reductase-like (IPR009078),Ribonucleotide reductase-related (IPR012348);NIAS_FLcDNA=J033022H19;Manual Curation=June 8%2C 2009;Literature_PMID=19297585;Oryzabase=9032;Expression=AK073063;TENOR=Os06t0127900-01;KEGG=Os06t0127900-01 (EC:1.17.4.1);B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	1470865	1470950	.	+	.	Parent=Os06t0127900-01
Chr06	irgsp1_rep	CDS	1470951	1471988	.	+	0	Parent=Os06t0127900-01
Chr06	irgsp1_rep	three_prime_UTR	1471989	1472378	.	+	.	Parent=Os06t0127900-01
Chr06	irgsp1_rep	mRNA	1476221	1477258	.	+	.	ID=Os06t0128000-00;Name=Os06t0128000-00;Locus_id=Os06g0128000;Note=Similar to formiminotransferase-like.;Transcript_evidence=EU976079 (DDBJ);ORF_evidence=NP_001148236.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: folic acid binding (GO:0005542),Molecular Function: transferase activity (GO:0016740);InterPro=Formiminotransferase%2C N-terminal subdomain (IPR012886),Formiminotransferas%2C N- and C-terminal subdomains (IPR022384);TENOR=Os06t0128000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	1476221	1477258	.	+	0	Parent=Os06t0128000-00
Chr06	irgsp1_rep	mRNA	1479125	1485779	.	+	.	ID=Os06t0128100-01;Name=Os06t0128100-01;Locus_id=Os06g0128100;Note=Protein of unknown function DUF248%2C methyltransferase putative domain containing protein.;Transcript_evidence=AK241973 (DDBJ%2C Best hit);ORF_evidence=Q8H636 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Protein of unknown function DUF248%2C methyltransferase putative (IPR004159);NIAS_FLcDNA=J075096E19;TENOR=Os06t0128100-01;KEGG=Os06t0128100-01
Chr06	irgsp1_rep	five_prime_UTR	1479125	1479265	.	+	.	Parent=Os06t0128100-01
Chr06	irgsp1_rep	CDS	1479266	1479928	.	+	0	Parent=Os06t0128100-01
Chr06	irgsp1_rep	CDS	1481578	1481788	.	+	0	Parent=Os06t0128100-01
Chr06	irgsp1_rep	CDS	1483624	1483924	.	+	2	Parent=Os06t0128100-01
Chr06	irgsp1_rep	CDS	1484216	1484611	.	+	1	Parent=Os06t0128100-01
Chr06	irgsp1_rep	CDS	1484992	1485069	.	+	1	Parent=Os06t0128100-01
Chr06	irgsp1_rep	CDS	1485165	1485372	.	+	1	Parent=Os06t0128100-01
Chr06	irgsp1_rep	three_prime_UTR	1485373	1485779	.	+	.	Parent=Os06t0128100-01
Chr06	irgsp1_rep	mRNA	1479301	1485369	.	-	.	ID=Os06t0128150-00;Name=Os06t0128150-00;Locus_id=Os06g0128150;Note=Hypothetical protein.;Transcript_evidence=tplb0038j22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0128150-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	1485104	1485369	.	-	.	Parent=Os06t0128150-00
Chr06	irgsp1_rep	five_prime_UTR	1484243	1484616	.	-	.	Parent=Os06t0128150-00
Chr06	irgsp1_rep	five_prime_UTR	1483605	1483917	.	-	.	Parent=Os06t0128150-00
Chr06	irgsp1_rep	five_prime_UTR	1481706	1481774	.	-	.	Parent=Os06t0128150-00
Chr06	irgsp1_rep	CDS	1481570	1481705	.	-	0	Parent=Os06t0128150-00
Chr06	irgsp1_rep	CDS	1479301	1479921	.	-	2	Parent=Os06t0128150-00
Chr06	irgsp1_rep	mRNA	1486147	1490634	.	-	.	ID=Os06t0128200-01;Name=Os06t0128200-01;Locus_id=Os06g0128200;Note=LMBR1-like conserved region domain containing protein.;Transcript_evidence=AK068886 (DDBJ%2C Best hit);ORF_evidence=NP_195766.1 (RefSeq);InterPro=LMBR1-like membrane protein (IPR006876);NIAS_FLcDNA=J023001A12;Expression=AK068886;TENOR=Os06t0128200-01;KEGG=Os06t0128200-01
Chr06	irgsp1_rep	five_prime_UTR	1490267	1490634	.	-	.	Parent=Os06t0128200-01
Chr06	irgsp1_rep	CDS	1489917	1490266	.	-	0	Parent=Os06t0128200-01
Chr06	irgsp1_rep	CDS	1489720	1489805	.	-	1	Parent=Os06t0128200-01
Chr06	irgsp1_rep	CDS	1489029	1489147	.	-	2	Parent=Os06t0128200-01
Chr06	irgsp1_rep	CDS	1488776	1488886	.	-	0	Parent=Os06t0128200-01
Chr06	irgsp1_rep	CDS	1488461	1488559	.	-	0	Parent=Os06t0128200-01
Chr06	irgsp1_rep	CDS	1488214	1488336	.	-	0	Parent=Os06t0128200-01
Chr06	irgsp1_rep	CDS	1487951	1488013	.	-	0	Parent=Os06t0128200-01
Chr06	irgsp1_rep	CDS	1487813	1487877	.	-	0	Parent=Os06t0128200-01
Chr06	irgsp1_rep	CDS	1487617	1487726	.	-	1	Parent=Os06t0128200-01
Chr06	irgsp1_rep	CDS	1487421	1487535	.	-	2	Parent=Os06t0128200-01
Chr06	irgsp1_rep	CDS	1487277	1487342	.	-	1	Parent=Os06t0128200-01
Chr06	irgsp1_rep	CDS	1486779	1486889	.	-	1	Parent=Os06t0128200-01
Chr06	irgsp1_rep	CDS	1486581	1486647	.	-	1	Parent=Os06t0128200-01
Chr06	irgsp1_rep	CDS	1486443	1486490	.	-	0	Parent=Os06t0128200-01
Chr06	irgsp1_rep	three_prime_UTR	1486147	1486442	.	-	.	Parent=Os06t0128200-01
Chr06	irgsp1_rep	mRNA	1486145	1490448	.	-	.	ID=Os06t0128200-02;Name=Os06t0128200-02;Locus_id=Os06g0128200;Note=Similar to predicted protein.;Transcript_evidence=AK060698 (DDBJ%2C Best hit);ORF_evidence=NP_195766.1 (RefSeq);InterPro=LMBR1-like membrane protein (IPR006876);NIAS_FLcDNA=001-030-F05;Expression=AK060698;TENOR=Os06t0128200-02;KEGG=Os06t0128200-02
Chr06	irgsp1_rep	five_prime_UTR	1490267	1490448	.	-	.	Parent=Os06t0128200-02
Chr06	irgsp1_rep	CDS	1489917	1490266	.	-	0	Parent=Os06t0128200-02
Chr06	irgsp1_rep	CDS	1489720	1489805	.	-	1	Parent=Os06t0128200-02
Chr06	irgsp1_rep	CDS	1489029	1489147	.	-	2	Parent=Os06t0128200-02
Chr06	irgsp1_rep	CDS	1488214	1488336	.	-	0	Parent=Os06t0128200-02
Chr06	irgsp1_rep	CDS	1487951	1488013	.	-	0	Parent=Os06t0128200-02
Chr06	irgsp1_rep	CDS	1487813	1487877	.	-	0	Parent=Os06t0128200-02
Chr06	irgsp1_rep	CDS	1487617	1487726	.	-	1	Parent=Os06t0128200-02
Chr06	irgsp1_rep	CDS	1487421	1487535	.	-	2	Parent=Os06t0128200-02
Chr06	irgsp1_rep	CDS	1487277	1487342	.	-	1	Parent=Os06t0128200-02
Chr06	irgsp1_rep	CDS	1486779	1486889	.	-	1	Parent=Os06t0128200-02
Chr06	irgsp1_rep	CDS	1486581	1486647	.	-	1	Parent=Os06t0128200-02
Chr06	irgsp1_rep	CDS	1486443	1486490	.	-	0	Parent=Os06t0128200-02
Chr06	irgsp1_rep	three_prime_UTR	1486145	1486442	.	-	.	Parent=Os06t0128200-02
Chr06	irgsp1_rep	mRNA	1485977	1486358	.	-	.	ID=Os06t0128200-03;Name=Os06t0128200-03;Locus_id=Os06g0128200;Note=Non-protein coding transcript.;Transcript_evidence=AK059076 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-022-A05;TENOR=Os06t0128200-03
Chr06	irgsp1_rep	exon	1485977	1486358	.	-	.	Parent=Os06t0128200-03
Chr06	irgsp1_rep	mRNA	1492910	1502583	.	-	.	ID=Os06t0128300-01;Name=Os06t0128300-01;Locus_id=Os06g0128300;RAP-DB Gene Symbol Synonym(s)=ABCB23%2C OsATM3;RAP-DB Gene Name Synonym(s)=ABC TRANSPORTER B FAMILY MEMBER 23%2C ABC transporter of mitochondrion 3;CGSNL Gene Symbol=ABCB23;CGSNL Gene Name=ABC TRANSPORTER B FAMILY MEMBER 23;Oryzabase Gene Symbol Synonym(s)=OsABCB23%2C OsISC32%2C OsATM3%2C ATM3;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCB subgroup member 23%2C Iron-sulfur cluster protein 32%2C ABC transporter of mitochondrion 3;Note=Mitochondrial half ABC (ATP-binding cassette) transporter%2C Iron homeostasis%2C Meristem maintenance;Transcript_evidence=AK072699;ORF_evidence=Q658I3;GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626),Cellular Component: integral component of membrane (GO:0016021);InterPro=ABC transporter type 1%2C transmembrane domain (IPR011527),P-loop containing nucleoside triphosphate hydrolase (IPR027417),ABC transporter-like (IPR003439),AAA+ ATPase domain (IPR003593),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=J023139I17;Manual Curation=April 4%2C 2017;Literature_PMID=28250070;Oryzabase=11942;Expression=AK072699;TENOR=Os06t0128300-01;KEGG=Os06t0128300-01
Chr06	irgsp1_rep	five_prime_UTR	1502323	1502583	.	-	.	Parent=Os06t0128300-01
Chr06	irgsp1_rep	CDS	1502065	1502322	.	-	0	Parent=Os06t0128300-01
Chr06	irgsp1_rep	CDS	1501149	1501361	.	-	0	Parent=Os06t0128300-01
Chr06	irgsp1_rep	CDS	1500416	1500602	.	-	0	Parent=Os06t0128300-01
Chr06	irgsp1_rep	CDS	1500202	1500263	.	-	2	Parent=Os06t0128300-01
Chr06	irgsp1_rep	CDS	1498801	1498844	.	-	0	Parent=Os06t0128300-01
Chr06	irgsp1_rep	CDS	1498285	1498387	.	-	1	Parent=Os06t0128300-01
Chr06	irgsp1_rep	CDS	1498027	1498134	.	-	0	Parent=Os06t0128300-01
Chr06	irgsp1_rep	CDS	1497830	1497913	.	-	0	Parent=Os06t0128300-01
Chr06	irgsp1_rep	CDS	1497664	1497724	.	-	0	Parent=Os06t0128300-01
Chr06	irgsp1_rep	CDS	1497108	1497253	.	-	2	Parent=Os06t0128300-01
Chr06	irgsp1_rep	CDS	1496530	1496646	.	-	0	Parent=Os06t0128300-01
Chr06	irgsp1_rep	CDS	1496339	1496424	.	-	0	Parent=Os06t0128300-01
Chr06	irgsp1_rep	CDS	1495691	1495779	.	-	1	Parent=Os06t0128300-01
Chr06	irgsp1_rep	CDS	1494976	1495031	.	-	2	Parent=Os06t0128300-01
Chr06	irgsp1_rep	CDS	1494762	1494842	.	-	0	Parent=Os06t0128300-01
Chr06	irgsp1_rep	CDS	1494432	1494497	.	-	0	Parent=Os06t0128300-01
Chr06	irgsp1_rep	CDS	1494212	1494304	.	-	0	Parent=Os06t0128300-01
Chr06	irgsp1_rep	CDS	1494047	1494111	.	-	0	Parent=Os06t0128300-01
Chr06	irgsp1_rep	CDS	1493630	1493765	.	-	1	Parent=Os06t0128300-01
Chr06	irgsp1_rep	CDS	1493172	1493318	.	-	0	Parent=Os06t0128300-01
Chr06	irgsp1_rep	three_prime_UTR	1492910	1493171	.	-	.	Parent=Os06t0128300-01
Chr06	irgsp1_rep	mRNA	1492909	1496640	.	-	.	ID=Os06t0128300-02;Name=Os06t0128300-02;Locus_id=Os06g0128300;CGSNL Gene Symbol=ABCB23;CGSNL Gene Name=ABC TRANSPORTER B FAMILY MEMBER 23;Oryzabase Gene Symbol Synonym(s)=OsABCB23%2C OsISC32%2C OsATM3%2C ATM3;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCB subgroup member 23%2C Iron-sulfur cluster protein 32%2C ABC transporter of mitochondrion 3;Note=Similar to STA1 (STARIK 1)%3B ATPase%2C coupled to transmembrane movement of substances.;Transcript_evidence=AK102879 (DDBJ%2C Best hit);ORF_evidence=NP_200635.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=J033112G11;Oryzabase=11942;Expression=AK102879;TENOR=Os06t0128300-02;KEGG=Os06t0128300-02
Chr06	irgsp1_rep	CDS	1496530	1496640	.	-	0	Parent=Os06t0128300-02
Chr06	irgsp1_rep	CDS	1496339	1496424	.	-	0	Parent=Os06t0128300-02
Chr06	irgsp1_rep	CDS	1495691	1495779	.	-	1	Parent=Os06t0128300-02
Chr06	irgsp1_rep	CDS	1494976	1495031	.	-	2	Parent=Os06t0128300-02
Chr06	irgsp1_rep	CDS	1494762	1494842	.	-	0	Parent=Os06t0128300-02
Chr06	irgsp1_rep	CDS	1494432	1494497	.	-	0	Parent=Os06t0128300-02
Chr06	irgsp1_rep	CDS	1494212	1494304	.	-	0	Parent=Os06t0128300-02
Chr06	irgsp1_rep	CDS	1494047	1494111	.	-	0	Parent=Os06t0128300-02
Chr06	irgsp1_rep	CDS	1493630	1493765	.	-	1	Parent=Os06t0128300-02
Chr06	irgsp1_rep	CDS	1493172	1493318	.	-	0	Parent=Os06t0128300-02
Chr06	irgsp1_rep	three_prime_UTR	1492909	1493171	.	-	.	Parent=Os06t0128300-02
Chr06	irgsp1_rep	mRNA	1492909	1502379	.	-	.	ID=Os06t0128300-03;Name=Os06t0128300-03;Locus_id=Os06g0128300;CGSNL Gene Symbol=ABCB23;CGSNL Gene Name=ABC TRANSPORTER B FAMILY MEMBER 23;Oryzabase Gene Symbol Synonym(s)=OsABCB23%2C OsISC32%2C OsATM3%2C ATM3;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCB subgroup member 23%2C Iron-sulfur cluster protein 32%2C ABC transporter of mitochondrion 3;Note=Similar to Mitochondrial half-ABC transporter.;Transcript_evidence=AK064342 (DDBJ%2C Best hit);ORF_evidence=NP_200635.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);NIAS_FLcDNA=002-107-H07;Oryzabase=11942;TENOR=Os06t0128300-03
Chr06	irgsp1_rep	five_prime_UTR	1502323	1502379	.	-	.	Parent=Os06t0128300-03
Chr06	irgsp1_rep	CDS	1502065	1502322	.	-	0	Parent=Os06t0128300-03
Chr06	irgsp1_rep	CDS	1501149	1501361	.	-	0	Parent=Os06t0128300-03
Chr06	irgsp1_rep	CDS	1500416	1500602	.	-	0	Parent=Os06t0128300-03
Chr06	irgsp1_rep	CDS	1500202	1500263	.	-	2	Parent=Os06t0128300-03
Chr06	irgsp1_rep	CDS	1498801	1498844	.	-	0	Parent=Os06t0128300-03
Chr06	irgsp1_rep	CDS	1498285	1498387	.	-	1	Parent=Os06t0128300-03
Chr06	irgsp1_rep	CDS	1498027	1498134	.	-	0	Parent=Os06t0128300-03
Chr06	irgsp1_rep	CDS	1497830	1497913	.	-	0	Parent=Os06t0128300-03
Chr06	irgsp1_rep	CDS	1497664	1497724	.	-	0	Parent=Os06t0128300-03
Chr06	irgsp1_rep	CDS	1497108	1497253	.	-	2	Parent=Os06t0128300-03
Chr06	irgsp1_rep	CDS	1496530	1496646	.	-	0	Parent=Os06t0128300-03
Chr06	irgsp1_rep	CDS	1496339	1496424	.	-	0	Parent=Os06t0128300-03
Chr06	irgsp1_rep	CDS	1495691	1495779	.	-	1	Parent=Os06t0128300-03
Chr06	irgsp1_rep	CDS	1494976	1495031	.	-	2	Parent=Os06t0128300-03
Chr06	irgsp1_rep	CDS	1494762	1494842	.	-	0	Parent=Os06t0128300-03
Chr06	irgsp1_rep	CDS	1494432	1494497	.	-	0	Parent=Os06t0128300-03
Chr06	irgsp1_rep	CDS	1494212	1494304	.	-	0	Parent=Os06t0128300-03
Chr06	irgsp1_rep	CDS	1494047	1494111	.	-	0	Parent=Os06t0128300-03
Chr06	irgsp1_rep	CDS	1493630	1493765	.	-	1	Parent=Os06t0128300-03
Chr06	irgsp1_rep	CDS	1493172	1493318	.	-	0	Parent=Os06t0128300-03
Chr06	irgsp1_rep	three_prime_UTR	1492909	1493171	.	-	.	Parent=Os06t0128300-03
Chr06	irgsp1_rep	mRNA	1504211	1509611	.	+	.	ID=Os06t0128400-01;Name=Os06t0128400-01;Locus_id=Os06g0128400;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK121983 (DDBJ%2C Best hit),AK064390 (DDBJ%2C Best hit);ORF_evidence=NP_001152334.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781);NIAS_FLcDNA=J033108N24,002-108-F08;TENOR=Os06t0128400-01
Chr06	irgsp1_rep	five_prime_UTR	1504211	1504348	.	+	.	Parent=Os06t0128400-01
Chr06	irgsp1_rep	CDS	1504349	1504482	.	+	0	Parent=Os06t0128400-01
Chr06	irgsp1_rep	CDS	1504607	1504707	.	+	1	Parent=Os06t0128400-01
Chr06	irgsp1_rep	CDS	1505398	1505489	.	+	2	Parent=Os06t0128400-01
Chr06	irgsp1_rep	CDS	1505834	1505934	.	+	0	Parent=Os06t0128400-01
Chr06	irgsp1_rep	CDS	1507185	1507275	.	+	1	Parent=Os06t0128400-01
Chr06	irgsp1_rep	CDS	1507615	1507673	.	+	0	Parent=Os06t0128400-01
Chr06	irgsp1_rep	CDS	1507763	1507883	.	+	1	Parent=Os06t0128400-01
Chr06	irgsp1_rep	CDS	1507958	1508026	.	+	0	Parent=Os06t0128400-01
Chr06	irgsp1_rep	CDS	1508320	1508372	.	+	0	Parent=Os06t0128400-01
Chr06	irgsp1_rep	CDS	1508687	1508795	.	+	1	Parent=Os06t0128400-01
Chr06	irgsp1_rep	CDS	1508894	1509064	.	+	0	Parent=Os06t0128400-01
Chr06	irgsp1_rep	CDS	1509147	1509305	.	+	0	Parent=Os06t0128400-01
Chr06	irgsp1_rep	CDS	1509560	1509611	.	+	0	Parent=Os06t0128400-01
Chr06	irgsp1_rep	mRNA	1504430	1509305	.	-	.	ID=Os06t0128450-00;Name=Os06t0128450-00;Locus_id=Os06g0128450;Note=Hypothetical gene.;Transcript_evidence=BT084810 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0128450-00;KEGG=Os06t0128450-00
Chr06	irgsp1_rep	five_prime_UTR	1509145	1509305	.	-	.	Parent=Os06t0128450-00
Chr06	irgsp1_rep	five_prime_UTR	1508882	1509058	.	-	.	Parent=Os06t0128450-00
Chr06	irgsp1_rep	five_prime_UTR	1508672	1508787	.	-	.	Parent=Os06t0128450-00
Chr06	irgsp1_rep	five_prime_UTR	1507951	1508066	.	-	.	Parent=Os06t0128450-00
Chr06	irgsp1_rep	five_prime_UTR	1507757	1507875	.	-	.	Parent=Os06t0128450-00
Chr06	irgsp1_rep	five_prime_UTR	1507619	1507666	.	-	.	Parent=Os06t0128450-00
Chr06	irgsp1_rep	five_prime_UTR	1507244	1507277	.	-	.	Parent=Os06t0128450-00
Chr06	irgsp1_rep	CDS	1507183	1507243	.	-	0	Parent=Os06t0128450-00
Chr06	irgsp1_rep	CDS	1505832	1505932	.	-	2	Parent=Os06t0128450-00
Chr06	irgsp1_rep	CDS	1505416	1505487	.	-	0	Parent=Os06t0128450-00
Chr06	irgsp1_rep	three_prime_UTR	1505394	1505415	.	-	.	Parent=Os06t0128450-00
Chr06	irgsp1_rep	three_prime_UTR	1504605	1504703	.	-	.	Parent=Os06t0128450-00
Chr06	irgsp1_rep	three_prime_UTR	1504430	1504480	.	-	.	Parent=Os06t0128450-00
Chr06	irgsp1_rep	mRNA	1512826	1516267	.	+	.	ID=Os06t0128500-01;Name=Os06t0128500-01;Locus_id=Os06g0128500;Note=Ribosomal protein L47%2C mitochondrial family protein.;Transcript_evidence=AK122132 (DDBJ%2C Best hit),AK058563 (DDBJ%2C Best hit);ORF_evidence=NP_001147665.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: mitochondrial ribosome (GO:0005761),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L29 (IPR001854),Ribosomal protein L47%2C mitochondrial (IPR010729);NIAS_FLcDNA=J033133F04,001-017-D12;Expression=AK122132;TENOR=Os06t0128500-01;KEGG=Os06t0128500-01
Chr06	irgsp1_rep	five_prime_UTR	1512826	1512954	.	+	.	Parent=Os06t0128500-01
Chr06	irgsp1_rep	CDS	1512955	1513126	.	+	0	Parent=Os06t0128500-01
Chr06	irgsp1_rep	CDS	1515039	1515196	.	+	2	Parent=Os06t0128500-01
Chr06	irgsp1_rep	CDS	1515989	1516096	.	+	0	Parent=Os06t0128500-01
Chr06	irgsp1_rep	three_prime_UTR	1516097	1516267	.	+	.	Parent=Os06t0128500-01
Chr06	irgsp1_rep	mRNA	1520761	1522188	.	+	.	ID=Os06t0128600-01;Name=Os06t0128600-01;Locus_id=Os06g0128600;Note=Ankyrin repeat containing protein.;Transcript_evidence=AK119921 (DDBJ%2C Best hit);ORF_evidence=NP_196344.2 (RefSeq);NIAS_FLcDNA=002-183-G07;TENOR=Os06t0128600-01;KEGG=Os06t0128600-01
Chr06	irgsp1_rep	five_prime_UTR	1520761	1521013	.	+	.	Parent=Os06t0128600-01
Chr06	irgsp1_rep	CDS	1521014	1521211	.	+	0	Parent=Os06t0128600-01
Chr06	irgsp1_rep	three_prime_UTR	1521212	1522188	.	+	.	Parent=Os06t0128600-01
Chr06	irgsp1_rep	mRNA	1523290	1526001	.	+	.	ID=Os06t0128700-01;Name=Os06t0128700-01;Locus_id=Os06g0128700;Oryzabase Gene Symbol Synonym(s)=XBOS36;Note=Ankyrin repeat domain containing protein.;Transcript_evidence=AK108566 (DDBJ%2C Best hit);ORF_evidence=A3B7Z9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=002-145-C10;Oryzabase=11150;TENOR=Os06t0128700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	1523290	1523357	.	+	0	Parent=Os06t0128700-01
Chr06	irgsp1_rep	CDS	1523431	1523641	.	+	1	Parent=Os06t0128700-01
Chr06	irgsp1_rep	CDS	1524086	1524132	.	+	0	Parent=Os06t0128700-01
Chr06	irgsp1_rep	CDS	1524221	1524272	.	+	1	Parent=Os06t0128700-01
Chr06	irgsp1_rep	three_prime_UTR	1524273	1524623	.	+	.	Parent=Os06t0128700-01
Chr06	irgsp1_rep	three_prime_UTR	1525299	1526001	.	+	.	Parent=Os06t0128700-01
Chr06	irgsp1_rep	mRNA	1526538	1527491	.	-	.	ID=Os06t0128800-01;Name=Os06t0128800-01;Locus_id=Os06g0128800;Note=C2 calcium/lipid-binding domain%2C CaLB domain containing protein.;Transcript_evidence=AK110551 (DDBJ%2C Best hit);ORF_evidence=A2Y8U0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium/lipid-binding domain%2C CaLB (IPR008973);NIAS_FLcDNA=002-168-C02;TENOR=Os06t0128800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	1527490	1527491	.	-	.	Parent=Os06t0128800-01
Chr06	irgsp1_rep	CDS	1526944	1527489	.	-	0	Parent=Os06t0128800-01
Chr06	irgsp1_rep	three_prime_UTR	1526538	1526943	.	-	.	Parent=Os06t0128800-01
Chr06	irgsp1_rep	mRNA	1530110	1531684	.	+	.	ID=Os06t0129000-01;Name=Os06t0129000-01;Locus_id=Os06g0129000;Note=Hypothetical conserved gene.;Transcript_evidence=AK287686 (DDBJ%2C Best hit);ORF_evidence=Q658H9 (UniProt);NIAS_FLcDNA=J065125P04;TENOR=Os06t0129000-01;KEGG=Os06t0129000-01
Chr06	irgsp1_rep	five_prime_UTR	1530110	1530188	.	+	.	Parent=Os06t0129000-01
Chr06	irgsp1_rep	CDS	1530189	1531370	.	+	0	Parent=Os06t0129000-01
Chr06	irgsp1_rep	three_prime_UTR	1531371	1531684	.	+	.	Parent=Os06t0129000-01
Chr06	irgsp1_rep	mRNA	1539031	1542210	.	+	.	ID=Os06t0129100-01;Name=Os06t0129100-01;Locus_id=Os06g0129100;Oryzabase Gene Name Synonym(s)=Retinol dehydrogenase 14;Note=Short-chain dehydrogenase/reductase SDR family protein.;Transcript_evidence=AK243431 (DDBJ%2C Best hit);ORF_evidence=NP_001152242.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J100067O21;Oryzabase=21904;TENOR=Os06t0129100-01;KEGG=Os06t0129100-01
Chr06	irgsp1_rep	five_prime_UTR	1539031	1539122	.	+	.	Parent=Os06t0129100-01
Chr06	irgsp1_rep	CDS	1539123	1539484	.	+	0	Parent=Os06t0129100-01
Chr06	irgsp1_rep	CDS	1539996	1540075	.	+	1	Parent=Os06t0129100-01
Chr06	irgsp1_rep	CDS	1540197	1540356	.	+	2	Parent=Os06t0129100-01
Chr06	irgsp1_rep	CDS	1540496	1540577	.	+	1	Parent=Os06t0129100-01
Chr06	irgsp1_rep	CDS	1541079	1541166	.	+	0	Parent=Os06t0129100-01
Chr06	irgsp1_rep	CDS	1541255	1541301	.	+	2	Parent=Os06t0129100-01
Chr06	irgsp1_rep	CDS	1541622	1541864	.	+	0	Parent=Os06t0129100-01
Chr06	irgsp1_rep	three_prime_UTR	1541865	1542210	.	+	.	Parent=Os06t0129100-01
Chr06	irgsp1_rep	mRNA	1544045	1546192	.	-	.	ID=Os06t0129200-01;Name=Os06t0129200-01;Locus_id=Os06g0129200;Note=BTB/POZ fold domain containing protein.;Transcript_evidence=AK102435 (DDBJ%2C Best hit);ORF_evidence=A2Y8U3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ fold (IPR011333),BTB/POZ (IPR013069);NIAS_FLcDNA=J033093J06;Expression=AK102435;TENOR=Os06t0129200-01;KEGG=Os06t0129200-01
Chr06	irgsp1_rep	five_prime_UTR	1545945	1546192	.	-	.	Parent=Os06t0129200-01
Chr06	irgsp1_rep	five_prime_UTR	1545561	1545618	.	-	.	Parent=Os06t0129200-01
Chr06	irgsp1_rep	CDS	1544259	1545560	.	-	0	Parent=Os06t0129200-01
Chr06	irgsp1_rep	three_prime_UTR	1544045	1544258	.	-	.	Parent=Os06t0129200-01
Chr06	irgsp1_rep	mRNA	1544078	1545392	.	-	.	ID=Os06t0129200-02;Name=Os06t0129200-02;Locus_id=Os06g0129200;Note=Similar to predicted protein.;Transcript_evidence=AK061998 (DDBJ%2C Best hit);ORF_evidence=A2Y8U3 (UniProt);NIAS_FLcDNA=001-043-D01;Expression=AK061998;TENOR=Os06t0129200-02;KEGG=Os06t0129200-02
Chr06	irgsp1_rep	CDS	1544259	1545392	.	-	0	Parent=Os06t0129200-02
Chr06	irgsp1_rep	three_prime_UTR	1544078	1544258	.	-	.	Parent=Os06t0129200-02
Chr06	irgsp1_rep	mRNA	1547059	1550637	.	-	.	ID=Os06t0129300-01;Name=Os06t0129300-01;Locus_id=Os06g0129300;Oryzabase Gene Symbol Synonym(s)=OsISI1;Oryzabase Gene Name Synonym(s)=Impaired sucrose induction1%2C ISI1 homologue;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK072613 (DDBJ%2C Best hit);ORF_evidence=Q5TJC3 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Cell division protein Cdc14 (IPR012535),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023133G19;Oryzabase=14190;Expression=AK072613;TENOR=Os06t0129300-01;KEGG=Os06t0129300-01
Chr06	irgsp1_rep	five_prime_UTR	1550568	1550637	.	-	.	Parent=Os06t0129300-01
Chr06	irgsp1_rep	CDS	1550255	1550567	.	-	0	Parent=Os06t0129300-01
Chr06	irgsp1_rep	CDS	1549216	1549421	.	-	2	Parent=Os06t0129300-01
Chr06	irgsp1_rep	CDS	1548485	1548583	.	-	0	Parent=Os06t0129300-01
Chr06	irgsp1_rep	CDS	1548127	1548200	.	-	0	Parent=Os06t0129300-01
Chr06	irgsp1_rep	CDS	1547435	1547651	.	-	1	Parent=Os06t0129300-01
Chr06	irgsp1_rep	three_prime_UTR	1547059	1547434	.	-	.	Parent=Os06t0129300-01
Chr06	irgsp1_rep	mRNA	1554973	1560896	.	+	.	ID=Os06t0129400-01;Name=Os06t0129400-01;Locus_id=Os06g0129400;Oryzabase Gene Symbol Synonym(s)=OsSPX-MFS3;Oryzabase Gene Name Synonym(s)=SPX-MFS protein 3;Note=Splicing variant of SPX-MFS protein 3;Transcript_evidence=AK243620 (DDBJ%2C Best hit);ORF_evidence=Q658H5-2;GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=SPX%2C N-terminal (IPR004331),Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J100085P12;Oryzabase=11849;TENOR=Os06t0129400-01;KEGG=Os06t0129400-01
Chr06	irgsp1_rep	five_prime_UTR	1554973	1555064	.	+	.	Parent=Os06t0129400-01
Chr06	irgsp1_rep	five_prime_UTR	1556450	1556469	.	+	.	Parent=Os06t0129400-01
Chr06	irgsp1_rep	CDS	1556470	1556522	.	+	0	Parent=Os06t0129400-01
Chr06	irgsp1_rep	CDS	1556742	1556862	.	+	1	Parent=Os06t0129400-01
Chr06	irgsp1_rep	CDS	1557339	1557650	.	+	0	Parent=Os06t0129400-01
Chr06	irgsp1_rep	CDS	1557805	1557909	.	+	0	Parent=Os06t0129400-01
Chr06	irgsp1_rep	CDS	1558008	1558465	.	+	0	Parent=Os06t0129400-01
Chr06	irgsp1_rep	CDS	1558885	1559186	.	+	1	Parent=Os06t0129400-01
Chr06	irgsp1_rep	CDS	1559299	1559480	.	+	2	Parent=Os06t0129400-01
Chr06	irgsp1_rep	CDS	1560065	1560082	.	+	0	Parent=Os06t0129400-01
Chr06	irgsp1_rep	CDS	1560247	1560369	.	+	0	Parent=Os06t0129400-01
Chr06	irgsp1_rep	three_prime_UTR	1560370	1560380	.	+	.	Parent=Os06t0129400-01
Chr06	irgsp1_rep	three_prime_UTR	1560486	1560896	.	+	.	Parent=Os06t0129400-01
Chr06	irgsp1_rep	mRNA	1554861	1561163	.	+	.	ID=Os06t0129400-02;Name=Os06t0129400-02;Locus_id=Os06g0129400;RAP-DB Gene Symbol Synonym(s)=OsSPX-MFS3;RAP-DB Gene Name Synonym(s)=SPX-MFS protein 3%2C SPX-Major Facility Superfamily3;Oryzabase Gene Symbol Synonym(s)=OsSPX-MFS3;Oryzabase Gene Name Synonym(s)=SPX-MFS protein 3;Note=Vacuolar phosphate efflux transporter%2C Pi homeostasis;Transcript_evidence=Inferred from literature;ORF_evidence=Q658H5;GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral component of membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),SPX domain (IPR004331),Major facilitator superfamily domain (IPR020846);Manual Curation=December 4%2C 2016;Literature_PMID=26424157,22803610;Oryzabase=11849
Chr06	irgsp1_rep	five_prime_UTR	1554861	1555064	.	+	.	Parent=Os06t0129400-02
Chr06	irgsp1_rep	five_prime_UTR	1556450	1556469	.	+	.	Parent=Os06t0129400-02
Chr06	irgsp1_rep	CDS	1556470	1556522	.	+	0	Parent=Os06t0129400-02
Chr06	irgsp1_rep	CDS	1556742	1556862	.	+	1	Parent=Os06t0129400-02
Chr06	irgsp1_rep	CDS	1557339	1557650	.	+	0	Parent=Os06t0129400-02
Chr06	irgsp1_rep	CDS	1557805	1557909	.	+	0	Parent=Os06t0129400-02
Chr06	irgsp1_rep	CDS	1558008	1558465	.	+	0	Parent=Os06t0129400-02
Chr06	irgsp1_rep	CDS	1558885	1559186	.	+	1	Parent=Os06t0129400-02
Chr06	irgsp1_rep	CDS	1559299	1559480	.	+	2	Parent=Os06t0129400-02
Chr06	irgsp1_rep	CDS	1559892	1560082	.	+	0	Parent=Os06t0129400-02
Chr06	irgsp1_rep	CDS	1560247	1560380	.	+	1	Parent=Os06t0129400-02
Chr06	irgsp1_rep	CDS	1560486	1560724	.	+	2	Parent=Os06t0129400-02
Chr06	irgsp1_rep	three_prime_UTR	1560725	1561163	.	+	.	Parent=Os06t0129400-02
Chr06	irgsp1_rep	mRNA	1565577	1573802	.	+	.	ID=Os06t0129600-01;Name=Os06t0129600-01;Locus_id=Os06g0129600;RAP-DB Gene Symbol Synonym(s)=OsGLIP1;RAP-DB Gene Name Synonym(s)=GDSL lipase 1;CGSNL Gene Symbol=GLIP1;CGSNL Gene Name=GDSL LIPASE 1;Oryzabase Gene Symbol Synonym(s)=OsGLIP1;Oryzabase Gene Name Synonym(s)=GDSL lipase 1;Note=GDSL lipase%2C Negative regulation of disease resistance;Transcript_evidence=KU350624;ORF_evidence=A0A1S5T6Z1;GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=SGNH hydrolase superfamily (IPR036514),GDSL lipase/esterase (IPR001087),GDSL lipase/esterase-like%2C plant (IPR035669);Manual Curation=October 22%2C 2018;Literature_PMID=29131851;Oryzabase=22159;TENOR=Os06t0129600-00;Subcellular location=lipid droplet (GO:0005811), endoplasmic reticulum membrane (GO:0005789)
Chr06	irgsp1_rep	CDS	1565577	1565874	.	+	0	Parent=Os06t0129600-01
Chr06	irgsp1_rep	CDS	1565978	1566203	.	+	2	Parent=Os06t0129600-01
Chr06	irgsp1_rep	CDS	1572361	1572502	.	+	1	Parent=Os06t0129600-01
Chr06	irgsp1_rep	CDS	1573272	1573802	.	+	0	Parent=Os06t0129600-01
Chr06	irgsp1_rep	mRNA	1565698	1573795	.	-	.	ID=Os06t0129650-00;Name=Os06t0129650-00;Locus_id=Os06g0129650;Note=Hypothetical protein.;Transcript_evidence=tplb0048c08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0129650-00
Chr06	irgsp1_rep	five_prime_UTR	1573794	1573795	.	-	.	Parent=Os06t0129650-00
Chr06	irgsp1_rep	CDS	1573488	1573793	.	-	0	Parent=Os06t0129650-00
Chr06	irgsp1_rep	three_prime_UTR	1573267	1573487	.	-	.	Parent=Os06t0129650-00
Chr06	irgsp1_rep	three_prime_UTR	1572341	1572497	.	-	.	Parent=Os06t0129650-00
Chr06	irgsp1_rep	three_prime_UTR	1565985	1566176	.	-	.	Parent=Os06t0129650-00
Chr06	irgsp1_rep	three_prime_UTR	1565698	1565880	.	-	.	Parent=Os06t0129650-00
Chr06	irgsp1_rep	mRNA	1574614	1577176	.	-	.	ID=Os06t0129700-01;Name=Os06t0129700-01;Locus_id=Os06g0129700;Note=NUDIX hydrolase domain containing protein.;Transcript_evidence=AK288101 (DDBJ%2C Best hit);ORF_evidence=NP_567384.1 (RefSeq);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=NUDIX hydrolase domain (IPR000086),NUDIX hydrolase domain-like (IPR015797);NIAS_FLcDNA=J075194M14;TENOR=Os06t0129700-01;KEGG=Os06t0129700-01
Chr06	irgsp1_rep	five_prime_UTR	1577171	1577176	.	-	.	Parent=Os06t0129700-01
Chr06	irgsp1_rep	CDS	1576832	1577170	.	-	0	Parent=Os06t0129700-01
Chr06	irgsp1_rep	CDS	1576637	1576714	.	-	0	Parent=Os06t0129700-01
Chr06	irgsp1_rep	CDS	1576035	1576127	.	-	0	Parent=Os06t0129700-01
Chr06	irgsp1_rep	CDS	1575858	1575950	.	-	0	Parent=Os06t0129700-01
Chr06	irgsp1_rep	CDS	1575579	1575677	.	-	0	Parent=Os06t0129700-01
Chr06	irgsp1_rep	CDS	1574795	1575070	.	-	0	Parent=Os06t0129700-01
Chr06	irgsp1_rep	three_prime_UTR	1574614	1574794	.	-	.	Parent=Os06t0129700-01
Chr06	irgsp1_rep	mRNA	1580320	1581715	.	+	.	ID=Os06t0129800-00;Name=Os06t0129800-00;Locus_id=Os06g0129800;Note=Hypothetical conserved gene.;Transcript_evidence=AK334231 (DDBJ);ORF_evidence=Q658H0 (UniProt);TENOR=Os06t0129800-00;KEGG=Os06t0129800-00
Chr06	irgsp1_rep	five_prime_UTR	1580320	1580341	.	+	.	Parent=Os06t0129800-00
Chr06	irgsp1_rep	CDS	1580342	1580509	.	+	0	Parent=Os06t0129800-00
Chr06	irgsp1_rep	CDS	1580581	1580658	.	+	0	Parent=Os06t0129800-00
Chr06	irgsp1_rep	CDS	1580895	1581091	.	+	0	Parent=Os06t0129800-00
Chr06	irgsp1_rep	CDS	1581342	1581468	.	+	1	Parent=Os06t0129800-00
Chr06	irgsp1_rep	CDS	1581561	1581692	.	+	0	Parent=Os06t0129800-00
Chr06	irgsp1_rep	three_prime_UTR	1581693	1581715	.	+	.	Parent=Os06t0129800-00
Chr06	irgsp1_rep	mRNA	1581991	1585738	.	-	.	ID=Os06t0129900-01;Name=Os06t0129900-01;Locus_id=Os06g0129900;Note=Similar to CytoChrome P450 CYPD.;Transcript_evidence=AK066075 (DDBJ%2C Best hit);ORF_evidence=XP_002320071.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J013057B08;Expression=AK066075;TENOR=Os06t0129900-01;KEGG=Os06t0129900-01
Chr06	irgsp1_rep	CDS	1585394	1585738	.	-	0	Parent=Os06t0129900-01
Chr06	irgsp1_rep	CDS	1584768	1584983	.	-	0	Parent=Os06t0129900-01
Chr06	irgsp1_rep	CDS	1584273	1584557	.	-	0	Parent=Os06t0129900-01
Chr06	irgsp1_rep	CDS	1583627	1583965	.	-	0	Parent=Os06t0129900-01
Chr06	irgsp1_rep	CDS	1582890	1583090	.	-	0	Parent=Os06t0129900-01
Chr06	irgsp1_rep	CDS	1582326	1582517	.	-	0	Parent=Os06t0129900-01
Chr06	irgsp1_rep	three_prime_UTR	1581991	1582325	.	-	.	Parent=Os06t0129900-01
Chr06	irgsp1_rep	mRNA	1582090	1585675	.	-	.	ID=Os06t0129900-02;Name=Os06t0129900-02;Locus_id=Os06g0129900;Note=Similar to cytoChrome P450.;Transcript_evidence=AK061981 (DDBJ%2C Best hit);ORF_evidence=XP_002320071.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=001-043-A09;Expression=AK061981;TENOR=Os06t0129900-02;KEGG=Os06t0129900-02
Chr06	irgsp1_rep	CDS	1585394	1585675	.	-	0	Parent=Os06t0129900-02
Chr06	irgsp1_rep	CDS	1584768	1584983	.	-	0	Parent=Os06t0129900-02
Chr06	irgsp1_rep	CDS	1584273	1584557	.	-	0	Parent=Os06t0129900-02
Chr06	irgsp1_rep	CDS	1583627	1583965	.	-	0	Parent=Os06t0129900-02
Chr06	irgsp1_rep	CDS	1582890	1583090	.	-	0	Parent=Os06t0129900-02
Chr06	irgsp1_rep	CDS	1582326	1582517	.	-	0	Parent=Os06t0129900-02
Chr06	irgsp1_rep	three_prime_UTR	1582090	1582325	.	-	.	Parent=Os06t0129900-02
Chr06	irgsp1_rep	mRNA	1588473	1596095	.	+	.	ID=Os06t0130000-01;Name=Os06t0130000-01;Locus_id=Os06g0130000;RAP-DB Gene Symbol Synonym(s)=LMR%2C SPL4;RAP-DB Gene Name Synonym(s)=LESION MIMIC RESEMBLING%2C SPOTTED LEAF4;CGSNL Gene Symbol=LRD6-6;CGSNL Gene Name=LESION RESEMBLING DISEASE 6-6;Oryzabase Gene Symbol Synonym(s)=LMR;Oryzabase Gene Name Synonym(s)=lesion resembling disease 6-6%2C LESION MIMIC RESEMBLING;Note=AAA-type ATPase%2C Plant spastin%2C Defense response%2C Leaf senescence;Transcript_evidence=AK070084;ORF_evidence=Q658G8;GO=Molecular Function: ATP binding (GO:0005524);InterPro=MIT (IPR007330),P-loop containing nucleoside triphosphate hydrolase (IPR027417),AAA+ ATPase domain (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);NIAS_FLcDNA=J023044D08;Manual Curation=February 13%2C 2019;Literature_PMID=25367283,30666263;Oryzabase=21412;Expression=AK070084;TENOR=Os06t0130000-01;KEGG=Os06t0130000-01 (EC:3.6.4.3)
Chr06	irgsp1_rep	five_prime_UTR	1588473	1588582	.	+	.	Parent=Os06t0130000-01
Chr06	irgsp1_rep	CDS	1588583	1588875	.	+	0	Parent=Os06t0130000-01
Chr06	irgsp1_rep	CDS	1588963	1589054	.	+	1	Parent=Os06t0130000-01
Chr06	irgsp1_rep	CDS	1591519	1591544	.	+	2	Parent=Os06t0130000-01
Chr06	irgsp1_rep	CDS	1592129	1592369	.	+	0	Parent=Os06t0130000-01
Chr06	irgsp1_rep	CDS	1592458	1592553	.	+	2	Parent=Os06t0130000-01
Chr06	irgsp1_rep	CDS	1592638	1592753	.	+	2	Parent=Os06t0130000-01
Chr06	irgsp1_rep	CDS	1592836	1592916	.	+	0	Parent=Os06t0130000-01
Chr06	irgsp1_rep	CDS	1593596	1593719	.	+	0	Parent=Os06t0130000-01
Chr06	irgsp1_rep	CDS	1594221	1594270	.	+	2	Parent=Os06t0130000-01
Chr06	irgsp1_rep	CDS	1594734	1594824	.	+	0	Parent=Os06t0130000-01
Chr06	irgsp1_rep	CDS	1595385	1595420	.	+	2	Parent=Os06t0130000-01
Chr06	irgsp1_rep	CDS	1595501	1595601	.	+	2	Parent=Os06t0130000-01
Chr06	irgsp1_rep	CDS	1595683	1595799	.	+	0	Parent=Os06t0130000-01
Chr06	irgsp1_rep	three_prime_UTR	1595800	1596095	.	+	.	Parent=Os06t0130000-01
Chr06	irgsp1_rep	mRNA	1588505	1602310	.	+	.	ID=Os06t0130000-02;Name=Os06t0130000-02;Locus_id=Os06g0130000;CGSNL Gene Symbol=LRD6-6;CGSNL Gene Name=LESION RESEMBLING DISEASE 6-6;Oryzabase Gene Symbol Synonym(s)=LMR;Oryzabase Gene Name Synonym(s)=lesion resembling disease 6-6%2C LESION MIMIC RESEMBLING;Note=Similar to Tobacco mosaic virus helicase domain-binding protein (Fragment).;Transcript_evidence=AK119321 (DDBJ%2C Best hit);ORF_evidence=NP_182074.4 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960),MIT (IPR007330);NIAS_FLcDNA=001-131-A02;Oryzabase=21412;Expression=AK119321;TENOR=Os06t0130000-02;KEGG=Os06t0130000-02 (EC:3.6.4.3)
Chr06	irgsp1_rep	five_prime_UTR	1588505	1588582	.	+	.	Parent=Os06t0130000-02
Chr06	irgsp1_rep	CDS	1588583	1588875	.	+	0	Parent=Os06t0130000-02
Chr06	irgsp1_rep	CDS	1588963	1589054	.	+	1	Parent=Os06t0130000-02
Chr06	irgsp1_rep	CDS	1591519	1591544	.	+	2	Parent=Os06t0130000-02
Chr06	irgsp1_rep	CDS	1592129	1592369	.	+	0	Parent=Os06t0130000-02
Chr06	irgsp1_rep	CDS	1592458	1592553	.	+	2	Parent=Os06t0130000-02
Chr06	irgsp1_rep	CDS	1592638	1592753	.	+	2	Parent=Os06t0130000-02
Chr06	irgsp1_rep	CDS	1592836	1592916	.	+	0	Parent=Os06t0130000-02
Chr06	irgsp1_rep	CDS	1593596	1593719	.	+	0	Parent=Os06t0130000-02
Chr06	irgsp1_rep	CDS	1594221	1594270	.	+	2	Parent=Os06t0130000-02
Chr06	irgsp1_rep	CDS	1594734	1594824	.	+	0	Parent=Os06t0130000-02
Chr06	irgsp1_rep	CDS	1595385	1595420	.	+	2	Parent=Os06t0130000-02
Chr06	irgsp1_rep	CDS	1595501	1595601	.	+	2	Parent=Os06t0130000-02
Chr06	irgsp1_rep	CDS	1595683	1595799	.	+	0	Parent=Os06t0130000-02
Chr06	irgsp1_rep	three_prime_UTR	1595800	1595811	.	+	.	Parent=Os06t0130000-02
Chr06	irgsp1_rep	three_prime_UTR	1596188	1596276	.	+	.	Parent=Os06t0130000-02
Chr06	irgsp1_rep	three_prime_UTR	1596618	1596901	.	+	.	Parent=Os06t0130000-02
Chr06	irgsp1_rep	three_prime_UTR	1597017	1597963	.	+	.	Parent=Os06t0130000-02
Chr06	irgsp1_rep	three_prime_UTR	1601539	1602310	.	+	.	Parent=Os06t0130000-02
Chr06	irgsp1_rep	mRNA	1588793	1596810	.	+	.	ID=Os06t0130000-03;Name=Os06t0130000-03;Locus_id=Os06g0130000;CGSNL Gene Symbol=LRD6-6;CGSNL Gene Name=LESION RESEMBLING DISEASE 6-6;Oryzabase Gene Symbol Synonym(s)=LMR;Oryzabase Gene Name Synonym(s)=lesion resembling disease 6-6%2C LESION MIMIC RESEMBLING;Note=Similar to ATP binding.;Transcript_evidence=AK064427 (DDBJ%2C Best hit);ORF_evidence=NP_182074.4 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);NIAS_FLcDNA=002-110-C09;Oryzabase=21412;Expression=AK064427;TENOR=Os06t0130000-03;KEGG=Os06t0130000-03 (EC:3.6.4.3)
Chr06	irgsp1_rep	CDS	1588793	1588875	.	+	0	Parent=Os06t0130000-03
Chr06	irgsp1_rep	CDS	1588963	1589054	.	+	1	Parent=Os06t0130000-03
Chr06	irgsp1_rep	CDS	1591519	1591544	.	+	2	Parent=Os06t0130000-03
Chr06	irgsp1_rep	CDS	1592129	1592369	.	+	0	Parent=Os06t0130000-03
Chr06	irgsp1_rep	CDS	1592458	1592553	.	+	2	Parent=Os06t0130000-03
Chr06	irgsp1_rep	CDS	1592638	1592753	.	+	2	Parent=Os06t0130000-03
Chr06	irgsp1_rep	CDS	1592836	1592916	.	+	0	Parent=Os06t0130000-03
Chr06	irgsp1_rep	CDS	1593596	1593719	.	+	0	Parent=Os06t0130000-03
Chr06	irgsp1_rep	CDS	1594221	1594270	.	+	2	Parent=Os06t0130000-03
Chr06	irgsp1_rep	CDS	1594734	1594824	.	+	0	Parent=Os06t0130000-03
Chr06	irgsp1_rep	CDS	1595385	1595420	.	+	2	Parent=Os06t0130000-03
Chr06	irgsp1_rep	CDS	1595501	1595601	.	+	2	Parent=Os06t0130000-03
Chr06	irgsp1_rep	CDS	1595683	1595799	.	+	0	Parent=Os06t0130000-03
Chr06	irgsp1_rep	three_prime_UTR	1595800	1595811	.	+	.	Parent=Os06t0130000-03
Chr06	irgsp1_rep	three_prime_UTR	1596188	1596276	.	+	.	Parent=Os06t0130000-03
Chr06	irgsp1_rep	three_prime_UTR	1596618	1596810	.	+	.	Parent=Os06t0130000-03
Chr06	irgsp1_rep	mRNA	1605798	1611986	.	+	.	ID=Os06t0130100-01;Name=Os06t0130100-01;Locus_id=Os06g0130100;RAP-DB Gene Symbol Synonym(s)=SIK1%2C OsSIK1%2C OsER2%2C ER2;RAP-DB Gene Name Synonym(s)=STRESS INDUCED PROTEIN KINASE 1%2C ERECTA 2;CGSNL Gene Symbol=SIK1;CGSNL Gene Name=STRESS INDUCED PROTEIN KINASE 1;Oryzabase Gene Symbol Synonym(s)=OsSIK1%2C OsER2%2C ER2%2C OsERL%2C ERL;Oryzabase Gene Name Synonym(s)=ERECTA 2%2C ER-LIKE;Note=Receptor-like kinase (RLK)%2C Drought and salt stress tolerance;Transcript_evidence=GQ423058 (DDBJ);ORF_evidence=D0U6M6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine- / dual-specificity protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Manual Curation=May 21%2C 2010;Literature_PMID=20128882;Oryzabase=10423;TENOR=Os06t0130100-01
Chr06	irgsp1_rep	CDS	1605798	1606036	.	+	0	Parent=Os06t0130100-01
Chr06	irgsp1_rep	CDS	1606503	1606574	.	+	1	Parent=Os06t0130100-01
Chr06	irgsp1_rep	CDS	1606799	1606870	.	+	1	Parent=Os06t0130100-01
Chr06	irgsp1_rep	CDS	1606971	1607042	.	+	1	Parent=Os06t0130100-01
Chr06	irgsp1_rep	CDS	1607324	1607395	.	+	1	Parent=Os06t0130100-01
Chr06	irgsp1_rep	CDS	1607607	1607678	.	+	1	Parent=Os06t0130100-01
Chr06	irgsp1_rep	CDS	1607776	1607847	.	+	1	Parent=Os06t0130100-01
Chr06	irgsp1_rep	CDS	1607935	1608006	.	+	1	Parent=Os06t0130100-01
Chr06	irgsp1_rep	CDS	1608091	1608159	.	+	1	Parent=Os06t0130100-01
Chr06	irgsp1_rep	CDS	1608277	1608348	.	+	1	Parent=Os06t0130100-01
Chr06	irgsp1_rep	CDS	1608474	1608545	.	+	1	Parent=Os06t0130100-01
Chr06	irgsp1_rep	CDS	1608629	1608700	.	+	1	Parent=Os06t0130100-01
Chr06	irgsp1_rep	CDS	1608785	1608856	.	+	1	Parent=Os06t0130100-01
Chr06	irgsp1_rep	CDS	1608939	1609010	.	+	1	Parent=Os06t0130100-01
Chr06	irgsp1_rep	CDS	1609099	1609170	.	+	1	Parent=Os06t0130100-01
Chr06	irgsp1_rep	CDS	1609285	1609356	.	+	1	Parent=Os06t0130100-01
Chr06	irgsp1_rep	CDS	1609448	1609519	.	+	1	Parent=Os06t0130100-01
Chr06	irgsp1_rep	CDS	1609632	1609703	.	+	1	Parent=Os06t0130100-01
Chr06	irgsp1_rep	CDS	1609800	1609871	.	+	1	Parent=Os06t0130100-01
Chr06	irgsp1_rep	CDS	1609961	1610032	.	+	1	Parent=Os06t0130100-01
Chr06	irgsp1_rep	CDS	1610119	1610190	.	+	1	Parent=Os06t0130100-01
Chr06	irgsp1_rep	CDS	1610282	1610352	.	+	1	Parent=Os06t0130100-01
Chr06	irgsp1_rep	CDS	1610438	1610569	.	+	2	Parent=Os06t0130100-01
Chr06	irgsp1_rep	CDS	1610675	1611013	.	+	2	Parent=Os06t0130100-01
Chr06	irgsp1_rep	CDS	1611096	1611466	.	+	2	Parent=Os06t0130100-01
Chr06	irgsp1_rep	CDS	1611598	1611951	.	+	0	Parent=Os06t0130100-01
Chr06	irgsp1_rep	three_prime_UTR	1611952	1611986	.	+	.	Parent=Os06t0130100-01
Chr06	irgsp1_rep	mRNA	1605742	1612070	.	+	.	ID=Os06t0130100-02;Name=Os06t0130100-02;Locus_id=Os06g0130100;CGSNL Gene Symbol=SIK1;CGSNL Gene Name=STRESS INDUCED PROTEIN KINASE 1;Oryzabase Gene Symbol Synonym(s)=OsSIK1%2C OsER2%2C ER2%2C OsERL%2C ERL;Oryzabase Gene Name Synonym(s)=ERECTA 2%2C ER-LIKE;Note=Oryza sativa stress-induced protein kinase gene 1.%2CDrought and salt stress tolerance.%2CReceptor-like kinase (RLK).;Transcript_evidence=AY332474 (DDBJ);ORF_evidence=Q7XB99 (UniProt);GO=Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Biological Process: protein amino acid phosphorylation (GO:0006468);InterPro=Protein kinase%2C core (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine protein kinase%2C active site (IPR008271),Protein kinase-like (IPR011009),Leucine-rich repeat%2C N-terminal (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine protein kinase-related (IPR017442);Oryzabase=10423;Expression=AY332474;TENOR=Os06t0130100-02;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	1605742	1605797	.	+	.	Parent=Os06t0130100-02
Chr06	irgsp1_rep	CDS	1605798	1606036	.	+	0	Parent=Os06t0130100-02
Chr06	irgsp1_rep	CDS	1606503	1606574	.	+	1	Parent=Os06t0130100-02
Chr06	irgsp1_rep	CDS	1606799	1606870	.	+	1	Parent=Os06t0130100-02
Chr06	irgsp1_rep	CDS	1606971	1607042	.	+	1	Parent=Os06t0130100-02
Chr06	irgsp1_rep	CDS	1607324	1607395	.	+	1	Parent=Os06t0130100-02
Chr06	irgsp1_rep	CDS	1607607	1607678	.	+	1	Parent=Os06t0130100-02
Chr06	irgsp1_rep	CDS	1607776	1607847	.	+	1	Parent=Os06t0130100-02
Chr06	irgsp1_rep	CDS	1607935	1608006	.	+	1	Parent=Os06t0130100-02
Chr06	irgsp1_rep	CDS	1608091	1608159	.	+	1	Parent=Os06t0130100-02
Chr06	irgsp1_rep	CDS	1608277	1608348	.	+	1	Parent=Os06t0130100-02
Chr06	irgsp1_rep	CDS	1608474	1608545	.	+	1	Parent=Os06t0130100-02
Chr06	irgsp1_rep	CDS	1608629	1608700	.	+	1	Parent=Os06t0130100-02
Chr06	irgsp1_rep	CDS	1608785	1608856	.	+	1	Parent=Os06t0130100-02
Chr06	irgsp1_rep	CDS	1608939	1609010	.	+	1	Parent=Os06t0130100-02
Chr06	irgsp1_rep	CDS	1609099	1609170	.	+	1	Parent=Os06t0130100-02
Chr06	irgsp1_rep	CDS	1609285	1609356	.	+	1	Parent=Os06t0130100-02
Chr06	irgsp1_rep	CDS	1609448	1609519	.	+	1	Parent=Os06t0130100-02
Chr06	irgsp1_rep	CDS	1609632	1609703	.	+	1	Parent=Os06t0130100-02
Chr06	irgsp1_rep	CDS	1609800	1609871	.	+	1	Parent=Os06t0130100-02
Chr06	irgsp1_rep	CDS	1609961	1610032	.	+	1	Parent=Os06t0130100-02
Chr06	irgsp1_rep	CDS	1610109	1610190	.	+	1	Parent=Os06t0130100-02
Chr06	irgsp1_rep	CDS	1610235	1610352	.	+	0	Parent=Os06t0130100-02
Chr06	irgsp1_rep	CDS	1610438	1610569	.	+	2	Parent=Os06t0130100-02
Chr06	irgsp1_rep	CDS	1610675	1611013	.	+	2	Parent=Os06t0130100-02
Chr06	irgsp1_rep	CDS	1611096	1611466	.	+	2	Parent=Os06t0130100-02
Chr06	irgsp1_rep	CDS	1611598	1611951	.	+	0	Parent=Os06t0130100-02
Chr06	irgsp1_rep	three_prime_UTR	1611952	1612070	.	+	.	Parent=Os06t0130100-02
Chr06	irgsp1_rep	mRNA	1609961	1612409	.	+	.	ID=Os06t0130100-03;Name=Os06t0130100-03;Locus_id=Os06g0130100;CGSNL Gene Symbol=SIK1;CGSNL Gene Name=STRESS INDUCED PROTEIN KINASE 1;Oryzabase Gene Symbol Synonym(s)=OsSIK1%2C OsER2%2C ER2%2C OsERL%2C ERL;Oryzabase Gene Name Synonym(s)=ERECTA 2%2C ER-LIKE;Note=Similar to Stress-induced protein kinase.;Transcript_evidence=AK064052 (DDBJ%2C Best hit);ORF_evidence=D0U6M6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-125-E11;Oryzabase=10423;Expression=AK064052;TENOR=Os06t0130100-03
Chr06	irgsp1_rep	five_prime_UTR	1609961	1609961	.	+	.	Parent=Os06t0130100-03
Chr06	irgsp1_rep	CDS	1609962	1610032	.	+	0	Parent=Os06t0130100-03
Chr06	irgsp1_rep	CDS	1610119	1610190	.	+	1	Parent=Os06t0130100-03
Chr06	irgsp1_rep	CDS	1610282	1610352	.	+	1	Parent=Os06t0130100-03
Chr06	irgsp1_rep	CDS	1610438	1610569	.	+	2	Parent=Os06t0130100-03
Chr06	irgsp1_rep	CDS	1610675	1611013	.	+	2	Parent=Os06t0130100-03
Chr06	irgsp1_rep	CDS	1611096	1611466	.	+	2	Parent=Os06t0130100-03
Chr06	irgsp1_rep	CDS	1611598	1611951	.	+	0	Parent=Os06t0130100-03
Chr06	irgsp1_rep	three_prime_UTR	1611952	1612409	.	+	.	Parent=Os06t0130100-03
Chr06	irgsp1_rep	mRNA	1613670	1620183	.	-	.	ID=Os06t0130200-01;Name=Os06t0130200-01;Locus_id=Os06g0130200;Note=Cell cycle regulated microtubule associated protein domain containing protein.;Transcript_evidence=AK101132 (DDBJ%2C Best hit);ORF_evidence=B9FRB4 (UniProt);InterPro=Cell cycle regulated microtubule associated protein (IPR022021);NIAS_FLcDNA=J033026D22;Expression=AK101132;TENOR=Os06t0130200-01;KEGG=Os06t0130200-01
Chr06	irgsp1_rep	five_prime_UTR	1620061	1620183	.	-	.	Parent=Os06t0130200-01
Chr06	irgsp1_rep	CDS	1619808	1620060	.	-	0	Parent=Os06t0130200-01
Chr06	irgsp1_rep	CDS	1618371	1618520	.	-	2	Parent=Os06t0130200-01
Chr06	irgsp1_rep	CDS	1618091	1618247	.	-	2	Parent=Os06t0130200-01
Chr06	irgsp1_rep	CDS	1617574	1617682	.	-	1	Parent=Os06t0130200-01
Chr06	irgsp1_rep	CDS	1617139	1617186	.	-	0	Parent=Os06t0130200-01
Chr06	irgsp1_rep	CDS	1616482	1616603	.	-	0	Parent=Os06t0130200-01
Chr06	irgsp1_rep	CDS	1616323	1616398	.	-	1	Parent=Os06t0130200-01
Chr06	irgsp1_rep	CDS	1615512	1615621	.	-	0	Parent=Os06t0130200-01
Chr06	irgsp1_rep	CDS	1615132	1615201	.	-	1	Parent=Os06t0130200-01
Chr06	irgsp1_rep	CDS	1614744	1614809	.	-	0	Parent=Os06t0130200-01
Chr06	irgsp1_rep	CDS	1614602	1614664	.	-	0	Parent=Os06t0130200-01
Chr06	irgsp1_rep	CDS	1614446	1614520	.	-	0	Parent=Os06t0130200-01
Chr06	irgsp1_rep	CDS	1614319	1614357	.	-	0	Parent=Os06t0130200-01
Chr06	irgsp1_rep	three_prime_UTR	1614310	1614318	.	-	.	Parent=Os06t0130200-01
Chr06	irgsp1_rep	three_prime_UTR	1614127	1614212	.	-	.	Parent=Os06t0130200-01
Chr06	irgsp1_rep	three_prime_UTR	1613670	1613950	.	-	.	Parent=Os06t0130200-01
Chr06	irgsp1_rep	mRNA	1629778	1633507	.	+	.	ID=Os06t0130400-01;Name=Os06t0130400-01;Locus_id=Os06g0130400;RAP-DB Gene Symbol Synonym(s)=SSG6%2C OsACS6;RAP-DB Gene Name Synonym(s)=SUBSTANDARD STARCH GRAIN6%2C substandard starch grain 6%2C ACC SYNTHASE 6;CGSNL Gene Symbol=SSG6;CGSNL Gene Name=SUBSTANDARD STARCH GRAIN6;Oryzabase Gene Symbol Synonym(s)=OsACS6%2C ACS6;Oryzabase Gene Name Synonym(s)=substandard starch grain 6%2C ACC SYNTHASE 6;Note=ACC synthase%2C Protein homologous to aminotransferase%2C Ethylene biosynthesis%2C Control of starch grain size in rice endosperm;Transcript_evidence=AK065212;ORF_evidence=Q9SNN8;GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent transferase (IPR015424),Aminotransferase%2C class I/classII (IPR004839),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Aminotransferases%2C class-I%2C pyridoxal-phosphate-binding site (IPR004838);NIAS_FLcDNA=J013002G02;Manual Curation=March 3%2C 2016;Literature_PMID=17012402,26792122;Oryzabase=9076;TENOR=Os06t0130400-01;KEGG=Os06t0130400-01 (EC:4.4.1.14)
Chr06	irgsp1_rep	five_prime_UTR	1629778	1629888	.	+	.	Parent=Os06t0130400-01
Chr06	irgsp1_rep	CDS	1629889	1630347	.	+	0	Parent=Os06t0130400-01
Chr06	irgsp1_rep	CDS	1630449	1630598	.	+	0	Parent=Os06t0130400-01
Chr06	irgsp1_rep	CDS	1631943	1632103	.	+	0	Parent=Os06t0130400-01
Chr06	irgsp1_rep	CDS	1632186	1633044	.	+	1	Parent=Os06t0130400-01
Chr06	irgsp1_rep	three_prime_UTR	1633045	1633507	.	+	.	Parent=Os06t0130400-01
Chr06	irgsp1_rep	mRNA	1635098	1635912	.	+	.	ID=Os06t0130500-01;Name=Os06t0130500-01;Locus_id=Os06g0130500;CGSNL Gene Symbol=CYP18-1;CGSNL Gene Name=CYCLOPHILIN 18-1;Oryzabase Gene Symbol Synonym(s)=OsCYP18-1%2C OsCYP-12;Oryzabase Gene Name Synonym(s)=cyclophilin 18-1%2C cyclophilin 12;Note=Similar to Cyclophilin-like protein PPIL3b.;Transcript_evidence=AK105360 (DDBJ%2C Best hit);ORF_evidence=A2Y8V7 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);InterPro=Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type (IPR002130),Cyclophilin-like (IPR015891),Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type%2C conserved site (IPR020892);NIAS_FLcDNA=001-119-D02;Oryzabase=10054;Expression=AK105360;TENOR=Os06t0130500-01;KEGG=Os06t0130500-01 (EC:5.2.1.8)
Chr06	irgsp1_rep	five_prime_UTR	1635098	1635178	.	+	.	Parent=Os06t0130500-01
Chr06	irgsp1_rep	CDS	1635179	1635181	.	+	0	Parent=Os06t0130500-01
Chr06	irgsp1_rep	CDS	1635271	1635750	.	+	0	Parent=Os06t0130500-01
Chr06	irgsp1_rep	three_prime_UTR	1635751	1635912	.	+	.	Parent=Os06t0130500-01
Chr06	irgsp1_rep	mRNA	1636572	1640852	.	-	.	ID=Os06t0130600-01;Name=Os06t0130600-01;Locus_id=Os06g0130600;Oryzabase Gene Symbol Synonym(s)=OsGBP1%2C GBP1;Oryzabase Gene Name Synonym(s)=barley B recombinant like protein D%2C GAGA-binding transcription factor 1;Note=GAGA binding-like family protein.;Transcript_evidence=AK070616 (DDBJ%2C Best hit);ORF_evidence=B4FYC0 (UniProt);InterPro=GAGA binding-like (IPR010409);NIAS_FLcDNA=J023060O20;Oryzabase=13973;Expression=AK070616;TENOR=Os06t0130600-01;KEGG=Os06t0130600-01
Chr06	irgsp1_rep	five_prime_UTR	1640620	1640852	.	-	.	Parent=Os06t0130600-01
Chr06	irgsp1_rep	five_prime_UTR	1639090	1639134	.	-	.	Parent=Os06t0130600-01
Chr06	irgsp1_rep	CDS	1639021	1639089	.	-	0	Parent=Os06t0130600-01
Chr06	irgsp1_rep	CDS	1636862	1637788	.	-	0	Parent=Os06t0130600-01
Chr06	irgsp1_rep	three_prime_UTR	1636572	1636861	.	-	.	Parent=Os06t0130600-01
Chr06	irgsp1_rep	mRNA	1642665	1643799	.	-	.	ID=Os06t0130800-01;Name=Os06t0130800-01;Locus_id=Os06g0130800;Oryzabase Gene Name Synonym(s)=histone H1%2C Oshistone H1;Note=Winged helix repressor DNA-binding domain containing protein.;Transcript_evidence=AK069863 (DDBJ%2C Best hit);ORF_evidence=O24227 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H1/H5 (IPR005818),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=J023037L12;Oryzabase=23699;Expression=AK069863;TENOR=Os06t0130800-01;KEGG=Os06t0130800-01
Chr06	irgsp1_rep	five_prime_UTR	1643734	1643799	.	-	.	Parent=Os06t0130800-01
Chr06	irgsp1_rep	CDS	1643479	1643733	.	-	0	Parent=Os06t0130800-01
Chr06	irgsp1_rep	CDS	1642922	1643389	.	-	0	Parent=Os06t0130800-01
Chr06	irgsp1_rep	three_prime_UTR	1642665	1642921	.	-	.	Parent=Os06t0130800-01
Chr06	irgsp1_rep	mRNA	1645434	1646322	.	-	.	ID=Os06t0130900-00;Name=Os06t0130900-00;Locus_id=Os06g0130900;Oryzabase Gene Name Synonym(s)=Histone H3%2C Histone H3.3;Note=Similar to Histone H3 (Fragment).;Transcript_evidence=CT841989 (DDBJ%2C Best hit);ORF_evidence=D7SZ96 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H3 (IPR000164),Histone core (IPR007125),Histone-fold (IPR009072);Oryzabase=17631;TENOR=Os06t0130900-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	1646322	1646322	.	-	.	Parent=Os06t0130900-00
Chr06	irgsp1_rep	CDS	1646151	1646321	.	-	0	Parent=Os06t0130900-00
Chr06	irgsp1_rep	CDS	1645704	1646042	.	-	0	Parent=Os06t0130900-00
Chr06	irgsp1_rep	three_prime_UTR	1645434	1645703	.	-	.	Parent=Os06t0130900-00
Chr06	irgsp1_rep	mRNA	1645578	1646324	.	+	.	ID=Os06t0131001-00;Name=Os06t0131001-00;Locus_id=Os06g0131001;Note=Conserved hypothetical protein.;Transcript_evidence=BT016934 (DDBJ);ORF_evidence=F2DKH6 (UniProt);TENOR=Os06t0131001-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	1645578	1646041	.	+	0	Parent=Os06t0131001-00
Chr06	irgsp1_rep	CDS	1646150	1646324	.	+	1	Parent=Os06t0131001-00
Chr06	irgsp1_rep	mRNA	1648595	1654106	.	+	.	ID=Os06t0131100-01;Name=Os06t0131100-01;Locus_id=Os06g0131100;Oryzabase Gene Symbol Synonym(s)=OsWD40-124;Note=Similar to guanine nucleotide-binding protein beta subunit-like protein 1.;Transcript_evidence=AK101808 (DDBJ%2C Best hit);ORF_evidence=B8B2C2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J033066L01;Oryzabase=10805;Expression=AK101808;TENOR=Os06t0131100-01;KEGG=Os06t0131100-01
Chr06	irgsp1_rep	five_prime_UTR	1648595	1648631	.	+	.	Parent=Os06t0131100-01
Chr06	irgsp1_rep	CDS	1648632	1648765	.	+	0	Parent=Os06t0131100-01
Chr06	irgsp1_rep	CDS	1648912	1648974	.	+	1	Parent=Os06t0131100-01
Chr06	irgsp1_rep	CDS	1649052	1649120	.	+	1	Parent=Os06t0131100-01
Chr06	irgsp1_rep	CDS	1649501	1649594	.	+	1	Parent=Os06t0131100-01
Chr06	irgsp1_rep	three_prime_UTR	1649595	1651818	.	+	.	Parent=Os06t0131100-01
Chr06	irgsp1_rep	three_prime_UTR	1652045	1652127	.	+	.	Parent=Os06t0131100-01
Chr06	irgsp1_rep	three_prime_UTR	1652251	1652342	.	+	.	Parent=Os06t0131100-01
Chr06	irgsp1_rep	three_prime_UTR	1653036	1653142	.	+	.	Parent=Os06t0131100-01
Chr06	irgsp1_rep	three_prime_UTR	1653406	1653469	.	+	.	Parent=Os06t0131100-01
Chr06	irgsp1_rep	three_prime_UTR	1653638	1654106	.	+	.	Parent=Os06t0131100-01
Chr06	irgsp1_rep	mRNA	1648617	1654151	.	+	.	ID=Os06t0131100-02;Name=Os06t0131100-02;Locus_id=Os06g0131100;Oryzabase Gene Symbol Synonym(s)=OsWD40-124;Note=WD40/YVTN repeat-like domain containing protein.;Transcript_evidence=AK112079 (DDBJ%2C Best hit);ORF_evidence=B6SY13 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=001-124-D02;Oryzabase=10805;Expression=AK112079;TENOR=Os06t0131100-02;KEGG=Os06t0131100-02
Chr06	irgsp1_rep	five_prime_UTR	1648617	1648631	.	+	.	Parent=Os06t0131100-02
Chr06	irgsp1_rep	CDS	1648632	1648765	.	+	0	Parent=Os06t0131100-02
Chr06	irgsp1_rep	CDS	1648912	1648974	.	+	1	Parent=Os06t0131100-02
Chr06	irgsp1_rep	CDS	1649052	1649120	.	+	1	Parent=Os06t0131100-02
Chr06	irgsp1_rep	CDS	1649501	1649557	.	+	1	Parent=Os06t0131100-02
Chr06	irgsp1_rep	CDS	1650385	1650539	.	+	1	Parent=Os06t0131100-02
Chr06	irgsp1_rep	CDS	1650669	1650724	.	+	2	Parent=Os06t0131100-02
Chr06	irgsp1_rep	CDS	1650868	1650961	.	+	0	Parent=Os06t0131100-02
Chr06	irgsp1_rep	CDS	1651755	1651818	.	+	2	Parent=Os06t0131100-02
Chr06	irgsp1_rep	CDS	1652045	1652127	.	+	1	Parent=Os06t0131100-02
Chr06	irgsp1_rep	CDS	1652251	1652342	.	+	2	Parent=Os06t0131100-02
Chr06	irgsp1_rep	CDS	1653036	1653142	.	+	0	Parent=Os06t0131100-02
Chr06	irgsp1_rep	CDS	1653406	1653469	.	+	1	Parent=Os06t0131100-02
Chr06	irgsp1_rep	CDS	1653638	1653778	.	+	0	Parent=Os06t0131100-02
Chr06	irgsp1_rep	three_prime_UTR	1653779	1654151	.	+	.	Parent=Os06t0131100-02
Chr06	irgsp1_rep	mRNA	1674358	1677406	.	-	.	ID=Os06t0131300-01;Name=Os06t0131300-01;Locus_id=Os06g0131300;RAP-DB Gene Symbol Synonym(s)=ADC1%2C OsADC1%2C ARGDC%2C ADC%2C OsAdc1;RAP-DB Gene Name Synonym(s)=ARGININE DECARBODYLASE%2C Arginine decarboxylase%2C Arginine decarboxylase 1;CGSNL Gene Symbol=ADC1;CGSNL Gene Name=ARGININE DECARBODYLASE;Oryzabase Gene Symbol Synonym(s)=OsADC1%2C ARGDC%2C ADC%2C OsAdc1;Oryzabase Gene Name Synonym(s)=Arginine decarboxylase%2C Arginine decarboxylase 1;Note=Arginine decarboxylase%2C Chilling stress response;Transcript_evidence=AY604047 (Yukihikari),EU220429 (EYI105);ORF_evidence=Q9SNN0;GO=Biological Process: arginine catabolic process (GO:0006527),Biological Process: spermidine biosynthetic process (GO:0008295),Molecular Function: catalytic activity (GO:0003824),Molecular Function: arginine decarboxylase activity (GO:0008792);InterPro=Ornithine/DAP/Arg decarboxylase (IPR000183),Arginine decarboxylase (IPR002985),PLP-binding barrel (IPR029066),Orn/DAP/Arg decarboxylase 2%2C N-terminal (IPR022644),Alanine racemase/group IV decarboxylase%2C C-terminal (IPR009006),Orn/DAP/Arg decarboxylase 2%2C C-terminal (IPR022643),Orn/DAP/Arg decarboxylase 2%2C pyridoxal-phosphate binding site (IPR022653);Manual Curation=July 1%2C 2015;Literature_PMID=16769152,20082138;Oryzabase=7113;TENOR=Os06t0131300-00
Chr06	irgsp1_rep	five_prime_UTR	1676774	1677406	.	-	.	Parent=Os06t0131300-01
Chr06	irgsp1_rep	CDS	1674665	1676773	.	-	0	Parent=Os06t0131300-01
Chr06	irgsp1_rep	three_prime_UTR	1674358	1674664	.	-	.	Parent=Os06t0131300-01
Chr06	irgsp1_rep	mRNA	1674682	1676906	.	+	.	ID=Os06t0131350-00;Name=Os06t0131350-00;Locus_id=Os06g0131350;Note=Hypothetical gene.;Transcript_evidence=AK335026 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0131350-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	1674682	1675621	.	+	.	Parent=Os06t0131350-00
Chr06	irgsp1_rep	CDS	1675622	1676818	.	+	0	Parent=Os06t0131350-00
Chr06	irgsp1_rep	three_prime_UTR	1676819	1676906	.	+	.	Parent=Os06t0131350-00
Chr06	irgsp1_rep	mRNA	1691885	1694051	.	+	.	ID=Os06t0131500-01;Name=Os06t0131500-01;Locus_id=Os06g0131500;Note=Glycoside hydrolase%2C family 17 protein.;Transcript_evidence=AK105303 (DDBJ%2C Best hit);ORF_evidence=B6T478 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-117-A07;Expression=AK105303;TENOR=Os06t0131500-01;KEGG=Os06t0131500-01
Chr06	irgsp1_rep	five_prime_UTR	1691885	1691907	.	+	.	Parent=Os06t0131500-01
Chr06	irgsp1_rep	CDS	1691908	1693179	.	+	0	Parent=Os06t0131500-01
Chr06	irgsp1_rep	CDS	1693720	1693797	.	+	0	Parent=Os06t0131500-01
Chr06	irgsp1_rep	three_prime_UTR	1693798	1694051	.	+	.	Parent=Os06t0131500-01
Chr06	irgsp1_rep	mRNA	1691885	1693551	.	+	.	ID=Os06t0131500-02;Name=Os06t0131500-02;Locus_id=Os06g0131500;Note=Similar to glucan endo-1%2C3-beta-glucosidase 7.;Transcript_evidence=AK109675 (DDBJ%2C Best hit);ORF_evidence=B6T478 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=002-145-B07;Expression=AK109675;TENOR=Os06t0131500-02;KEGG=Os06t0131500-02
Chr06	irgsp1_rep	five_prime_UTR	1691885	1691907	.	+	.	Parent=Os06t0131500-02
Chr06	irgsp1_rep	CDS	1691908	1693191	.	+	0	Parent=Os06t0131500-02
Chr06	irgsp1_rep	three_prime_UTR	1693192	1693551	.	+	.	Parent=Os06t0131500-02
Chr06	irgsp1_rep	mRNA	1699521	1702611	.	-	.	ID=Os06t0131700-01;Name=Os06t0131700-01;Locus_id=Os06g0131700;RAP-DB Gene Symbol Synonym(s)=OsSWN1;RAP-DB Gene Name Synonym(s)=secondary wall NAC transcription factor 1%2C secondary wall-associated NAC domain protein 1;Oryzabase Gene Symbol Synonym(s)=ONAC007%2C ONAC7%2C OsSND1%2C SND1%2C OsSWN1%2C SWN1%2C DLN157%2C OsDLN157;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 007%2C NAC domain-containing protein 7%2C SECONDARY WALL ASSOCIATED NAC DOMAIN PROTEIN 1%2C SECONDARY WALL NAC DOMAIN PROTEIN 1%2C secondary wall NAC transcription factor 1%2C secondary wall-associated NAC 1%2C no apical meristem%2C DLN repressor 157%2C DLN motif protein 157;Note=NAC transcription factor%2C Regulation of secondary wall biosynthesis;Transcript_evidence=AK119784;ORF_evidence=Q9SNM6;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=NAC domain superfamily (IPR036093),NAC domain (IPR003441);NIAS_FLcDNA=002-173-F05;Manual Curation=October 20%2C 2020;Literature_PMID=21908441,DOI:10.1007/s12374-014-0400-y;Oryzabase=11459;Expression=AK119784;TENOR=Os06t0131700-01;KEGG=Os06t0131700-01
Chr06	irgsp1_rep	five_prime_UTR	1702522	1702611	.	-	.	Parent=Os06t0131700-01
Chr06	irgsp1_rep	CDS	1702350	1702521	.	-	0	Parent=Os06t0131700-01
Chr06	irgsp1_rep	CDS	1701930	1702255	.	-	2	Parent=Os06t0131700-01
Chr06	irgsp1_rep	CDS	1700017	1700706	.	-	0	Parent=Os06t0131700-01
Chr06	irgsp1_rep	three_prime_UTR	1699521	1700016	.	-	.	Parent=Os06t0131700-01
Chr06	irgsp1_rep	mRNA	1699526	1702564	.	-	.	ID=Os06t0131700-02;Name=Os06t0131700-02;Locus_id=Os06g0131700;Oryzabase Gene Symbol Synonym(s)=ONAC007%2C ONAC7%2C OsSND1%2C SND1%2C OsSWN1%2C SWN1%2C DLN157%2C OsDLN157;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 007%2C NAC domain-containing protein 7%2C SECONDARY WALL ASSOCIATED NAC DOMAIN PROTEIN 1%2C SECONDARY WALL NAC DOMAIN PROTEIN 1%2C secondary wall NAC transcription factor 1%2C secondary wall-associated NAC 1%2C no apical meristem%2C DLN repressor 157%2C DLN motif protein 157;Note=No apical meristem (NAM) protein domain containing protein.;Transcript_evidence=AK062952 (DDBJ%2C Best hit);ORF_evidence=F2DV83 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=001-109-C09;Oryzabase=11459;TENOR=Os06t0131700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	1702522	1702564	.	-	.	Parent=Os06t0131700-02
Chr06	irgsp1_rep	CDS	1702350	1702521	.	-	0	Parent=Os06t0131700-02
Chr06	irgsp1_rep	CDS	1701930	1702255	.	-	2	Parent=Os06t0131700-02
Chr06	irgsp1_rep	CDS	1700614	1700706	.	-	0	Parent=Os06t0131700-02
Chr06	irgsp1_rep	CDS	1700522	1700563	.	-	0	Parent=Os06t0131700-02
Chr06	irgsp1_rep	three_prime_UTR	1699526	1700521	.	-	.	Parent=Os06t0131700-02
Chr06	irgsp1_rep	mRNA	1701945	1702546	.	+	.	ID=Os06t0131800-00;Name=Os06t0131800-00;Locus_id=Os06g0131800;Note=Hypothetical protein.;Transcript_evidence=FP093663 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0131800-00
Chr06	irgsp1_rep	five_prime_UTR	1701945	1702116	.	+	.	Parent=Os06t0131800-00
Chr06	irgsp1_rep	CDS	1702117	1702341	.	+	0	Parent=Os06t0131800-00
Chr06	irgsp1_rep	three_prime_UTR	1702342	1702546	.	+	.	Parent=Os06t0131800-00
Chr06	irgsp1_rep	mRNA	1712173	1712234	.	+	.	ID=Os06t0131900-00;Name=Os06t0131900-00;Locus_id=Os06g0131900;Note=Non-protein coding transcript.;Transcript_evidence=EU941912 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0131900-00
Chr06	irgsp1_rep	exon	1712173	1712234	.	+	.	Parent=Os06t0131900-00
Chr06	irgsp1_rep	mRNA	1716393	1717221	.	+	.	ID=Os06t0132000-00;Name=Os06t0132000-00;Locus_id=Os06g0132000;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);InterPro=Ribonuclease H1%2C N-terminal (IPR011320);TENOR=Os06t0132000-00
Chr06	irgsp1_rep	five_prime_UTR	1716393	1716396	.	+	.	Parent=Os06t0132000-00
Chr06	irgsp1_rep	CDS	1716397	1717221	.	+	0	Parent=Os06t0132000-00
Chr06	irgsp1_rep	mRNA	1728153	1729996	.	-	.	ID=Os06t0132100-01;Name=Os06t0132100-01;Locus_id=Os06g0132100;Note=Transmembrane receptor%2C eukaryota domain containing protein.;Transcript_evidence=AK072859 (DDBJ%2C Best hit),AK100206 (DDBJ%2C Best hit);ORF_evidence=B6TBV2 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Transmembrane receptor%2C eukaryota (IPR009637);NIAS_FLcDNA=J023143I01,J023041H11;Expression=AK072859;TENOR=Os06t0132100-01;KEGG=Os06t0132100-01
Chr06	irgsp1_rep	five_prime_UTR	1729834	1729996	.	-	.	Parent=Os06t0132100-01
Chr06	irgsp1_rep	CDS	1728469	1729833	.	-	0	Parent=Os06t0132100-01
Chr06	irgsp1_rep	three_prime_UTR	1728153	1728468	.	-	.	Parent=Os06t0132100-01
Chr06	irgsp1_rep	mRNA	1728136	1729902	.	-	.	ID=Os06t0132100-03;Name=Os06t0132100-03;Locus_id=Os06g0132100;Note=Transmembrane receptor%2C eukaryota domain containing protein.;Transcript_evidence=AK105429 (DDBJ%2C Best hit);ORF_evidence=B6TBV2 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Transmembrane receptor%2C eukaryota (IPR009637);NIAS_FLcDNA=001-124-E04;Expression=AK105429;TENOR=Os06t0132100-03;KEGG=Os06t0132100-03
Chr06	irgsp1_rep	five_prime_UTR	1729834	1729902	.	-	.	Parent=Os06t0132100-03
Chr06	irgsp1_rep	CDS	1728469	1729833	.	-	0	Parent=Os06t0132100-03
Chr06	irgsp1_rep	three_prime_UTR	1728136	1728468	.	-	.	Parent=Os06t0132100-03
Chr06	irgsp1_rep	mRNA	1730647	1731608	.	-	.	ID=Os06t0132200-01;Name=Os06t0132200-01;Locus_id=Os06g0132200;Note=Non-protein coding transcript.;Transcript_evidence=AK062713 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-106-C04;TENOR=Os06t0132200-01
Chr06	irgsp1_rep	exon	1730647	1731608	.	-	.	Parent=Os06t0132200-01
Chr06	irgsp1_rep	mRNA	1731821	1732565	.	-	.	ID=Os06t0132300-01;Name=Os06t0132300-01;Locus_id=Os06g0132300;Note=Conserved hypothetical protein.;Transcript_evidence=AK107873 (DDBJ%2C Best hit);ORF_evidence=A2Y8W8 (UniProt);NIAS_FLcDNA=002-134-C10;TENOR=Os06t0132300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	1731939	1732565	.	-	0	Parent=Os06t0132300-01
Chr06	irgsp1_rep	three_prime_UTR	1731821	1731938	.	-	.	Parent=Os06t0132300-01
Chr06	irgsp1_rep	mRNA	1733988	1734456	.	-	.	ID=Os06t0132400-01;Name=Os06t0132400-01;Locus_id=Os06g0132400;CGSNL Gene Symbol=YGL18;CGSNL Gene Name=YELLOW-GREEN LEAF 18;Oryzabase Gene Symbol Synonym(s)=ChlM%2C CHLM%2C MgMT%2C OsYGL18%2C OsChlM%2C OsCHLM%2C OsMgMT;Oryzabase Gene Name Synonym(s)=Mg-Proto IX methyltransferase%2C Mg-protoporphyrin IX methyltransferase%2C yellow-green leaf 18;Note=Similar to Magnesium-protoporphyrin O-methyltransferase (EC 2.1.1.11) (Magnesium- protoporphyrin IX methyltransferase).;Transcript_evidence=AK059151 (DDBJ%2C Best hit);ORF_evidence=E5GBL6 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Biological Process: chlorophyll biosynthetic process (GO:0015995),Molecular Function: magnesium protoporphyrin IX methyltransferase activity (GO:0046406);InterPro=Magnesium-protoporphyrin IX methyltransferase%2C C-terminal (IPR010940);NIAS_FLcDNA=001-023-B10;Oryzabase=19857;Expression=AK059151;TENOR=Os06t0132400-01;KEGG=Os06t0132400-01 (EC:2.1.1.11)
Chr06	irgsp1_rep	CDS	1734127	1734456	.	-	0	Parent=Os06t0132400-01
Chr06	irgsp1_rep	three_prime_UTR	1733988	1734126	.	-	.	Parent=Os06t0132400-01
Chr06	irgsp1_rep	mRNA	1736723	1742581	.	-	.	ID=Os06t0132500-01;Name=Os06t0132500-01;Locus_id=Os06g0132500;RAP-DB Gene Symbol Synonym(s)=OsBDG;RAP-DB Gene Name Synonym(s)=BODYGUARD;CGSNL Gene Symbol=BDG;CGSNL Gene Name=BODYGUARD;Oryzabase Gene Symbol Synonym(s)=Os-BDG%2C OsBDG;Note=Control of wax biosynthesis;Transcript_evidence=Inferred from literature;ORF_evidence=Q84ZY8;InterPro=Alpha/Beta hydrolase fold (IPR029058),Alpha/beta hydrolase fold-1 (IPR000073);Manual Curation=February 15%2C 2018;Literature_PMID=29237723;Oryzabase=22277;TENOR=Os06t0132500-00;KEGG=Os06t0132500-00
Chr06	irgsp1_rep	five_prime_UTR	1742559	1742581	.	-	.	Parent=Os06t0132500-01
Chr06	irgsp1_rep	CDS	1741943	1742558	.	-	0	Parent=Os06t0132500-01
Chr06	irgsp1_rep	CDS	1741521	1741852	.	-	2	Parent=Os06t0132500-01
Chr06	irgsp1_rep	CDS	1740923	1741128	.	-	0	Parent=Os06t0132500-01
Chr06	irgsp1_rep	CDS	1737381	1737729	.	-	1	Parent=Os06t0132500-01
Chr06	irgsp1_rep	three_prime_UTR	1736723	1737380	.	-	.	Parent=Os06t0132500-01
Chr06	irgsp1_rep	mRNA	1754352	1760884	.	-	.	ID=Os06t0132600-01;Name=Os06t0132600-01;Locus_id=Os06g0132600;Oryzabase Gene Symbol Synonym(s)=OsRAD1%2C RAD1;Oryzabase Gene Name Synonym(s)=Rad1 (S. pombe) homologue%2C Radiation sensitive 1;Note=Repair protein Rad1/Rec1 domain containing protein.;Transcript_evidence=AK061226 (DDBJ%2C Best hit);ORF_evidence=NP_001149448.1 (RefSeq);GO=Biological Process: DNA repair (GO:0006281),Cellular Component: nucleus (GO:0005634),Molecular Function: damaged DNA binding (GO:0003684),Molecular Function: exodeoxyribonuclease III activity (GO:0008853);InterPro=Repair protein Rad1/Rec1 (IPR003021);NIAS_FLcDNA=006-210-H12;Oryzabase=21305;Expression=AK061226;TENOR=Os06t0132600-01;KEGG=Os06t0132600-01 (EC:3.1.11.2)
Chr06	irgsp1_rep	five_prime_UTR	1760810	1760884	.	-	.	Parent=Os06t0132600-01
Chr06	irgsp1_rep	CDS	1760696	1760809	.	-	0	Parent=Os06t0132600-01
Chr06	irgsp1_rep	CDS	1760515	1760604	.	-	0	Parent=Os06t0132600-01
Chr06	irgsp1_rep	CDS	1760272	1760426	.	-	0	Parent=Os06t0132600-01
Chr06	irgsp1_rep	CDS	1759693	1759813	.	-	1	Parent=Os06t0132600-01
Chr06	irgsp1_rep	CDS	1759475	1759594	.	-	0	Parent=Os06t0132600-01
Chr06	irgsp1_rep	CDS	1759326	1759396	.	-	0	Parent=Os06t0132600-01
Chr06	irgsp1_rep	CDS	1759113	1759249	.	-	1	Parent=Os06t0132600-01
Chr06	irgsp1_rep	CDS	1754541	1754623	.	-	2	Parent=Os06t0132600-01
Chr06	irgsp1_rep	three_prime_UTR	1754352	1754540	.	-	.	Parent=Os06t0132600-01
Chr06	irgsp1_rep	mRNA	1758990	1760884	.	-	.	ID=Os06t0132600-02;Name=Os06t0132600-02;Locus_id=Os06g0132600;RAP-DB Gene Symbol Synonym(s)=OsRAD1%2C RAD1;RAP-DB Gene Name Synonym(s)=Rad1 (S. pombe) homologue%2C Radiation sensitive 1;Oryzabase Gene Symbol Synonym(s)=OsRAD1%2C RAD1;Oryzabase Gene Name Synonym(s)=Rad1 (S. pombe) homologue%2C Radiation sensitive 1;Note=Component of the 9-1-1 complex%2C Promotion of accurate meiotic double-strand break (DSB) repair;Transcript_evidence=AK074010;ORF_evidence=Q9FPC6;GO=Cellular Component: nucleus (GO:0005634);InterPro=Rad1/Rec1/Rad17 (IPR003021);NIAS_FLcDNA=J033076A22;Manual Curation=October 3%2C 2016;Literature_PMID=27512017;Oryzabase=21305;Expression=AK074010;TENOR=Os06t0132600-02;KEGG=Os06t0132600-02 (EC:3.1.11.2)
Chr06	irgsp1_rep	five_prime_UTR	1760810	1760884	.	-	.	Parent=Os06t0132600-02
Chr06	irgsp1_rep	CDS	1760696	1760809	.	-	0	Parent=Os06t0132600-02
Chr06	irgsp1_rep	CDS	1760515	1760604	.	-	0	Parent=Os06t0132600-02
Chr06	irgsp1_rep	CDS	1760272	1760426	.	-	0	Parent=Os06t0132600-02
Chr06	irgsp1_rep	CDS	1759693	1759813	.	-	1	Parent=Os06t0132600-02
Chr06	irgsp1_rep	CDS	1759475	1759594	.	-	0	Parent=Os06t0132600-02
Chr06	irgsp1_rep	CDS	1759326	1759396	.	-	0	Parent=Os06t0132600-02
Chr06	irgsp1_rep	CDS	1759006	1759249	.	-	1	Parent=Os06t0132600-02
Chr06	irgsp1_rep	three_prime_UTR	1758990	1759005	.	-	.	Parent=Os06t0132600-02
Chr06	irgsp1_rep	mRNA	1761433	1762875	.	+	.	ID=Os06t0132801-01;Name=Os06t0132801-01;Locus_id=Os06g0132801;Note=Hypothetical conserved gene.;Transcript_evidence=AK289264 (DDBJ%2C Best hit);ORF_evidence=Q5VRQ1 (UniProt);NIAS_FLcDNA=J100088E07;TENOR=Os06t0132801-01;KEGG=Os06t0132801-01
Chr06	irgsp1_rep	CDS	1761433	1762287	.	+	0	Parent=Os06t0132801-01
Chr06	irgsp1_rep	three_prime_UTR	1762288	1762875	.	+	.	Parent=Os06t0132801-01
Chr06	irgsp1_rep	mRNA	1765622	1770574	.	+	.	ID=Os06t0133000-01;Name=Os06t0133000-01;Locus_id=Os06g0133000;RAP-DB Gene Symbol Synonym(s)=Wx;RAP-DB Gene Name Synonym(s)=waxy%2C Waxy;CGSNL Gene Symbol=WX1;CGSNL Gene Name=GLUTINOUS ENDOSPERM;Oryzabase Gene Symbol Synonym(s)=wx (Wx(am))%2C Wx%2C WX-B%2C GBSS-I%2C GBSS%2C OsGBSSI%2C GBSS1%2C OsGBSS1%2C GBSSI%2C GSS%2C OsWx;Oryzabase Gene Name Synonym(s)=glutinous endosperm%2C waxy%2C Waxy%2C WAXY%2C "Granule-bound starch synthase 1%2C chloroplastic/amyloplastic"%2C Granule-bound starch synthase I%2C UDP-glycogen synthase%2C "Granule-bound starch synthase%2C chloroplast precursor"%2C glycogen [starch] synthase%2C Granule-bound glycogen synthase%2C UDPG-glycogen transglucosylase%2C uridine diphosphoglucose-glycogen glucosyltransferase%2C glycogen [starch] synthetase%2C Granule-bound glycogen [starch] synthase%2C UDPG-glycogen synthetase%2C granule bound starch synthase I%2C granule-bound starch synthase 1%2C granule-bound starch synthase I;Note=Granule-bound starch synthase%2C Synthesis of amylose in endosperm;Transcript_evidence=AK070431;ORF_evidence=Q0DEV5;GO=Molecular Function: glycogen (starch) synthase activity (GO:0004373);InterPro=Bacterial/plant glycogen synthase (IPR011835),Starch synthase%2C catalytic domain (IPR013534),Glycosyl transferase%2C family 1 (IPR001296);NIAS_FLcDNA=J023052C23;Manual Curation=March 2%2C 2018;Literature_PMID=29335547,7742858,DOI:10.1016/0168-9452(95)04143-I;Oryzabase=744;Expression=AK070431;TENOR=Os06t0133000-01;KEGG=Os06t0133000-01 (EC:2.4.1.242)
Chr06	irgsp1_rep	five_prime_UTR	1765622	1765759	.	+	.	Parent=Os06t0133000-01
Chr06	irgsp1_rep	five_prime_UTR	1766889	1766920	.	+	.	Parent=Os06t0133000-01
Chr06	irgsp1_rep	CDS	1766921	1767259	.	+	0	Parent=Os06t0133000-01
Chr06	irgsp1_rep	CDS	1767373	1767453	.	+	0	Parent=Os06t0133000-01
Chr06	irgsp1_rep	CDS	1767561	1767659	.	+	0	Parent=Os06t0133000-01
Chr06	irgsp1_rep	CDS	1767756	1767845	.	+	0	Parent=Os06t0133000-01
Chr06	irgsp1_rep	CDS	1767945	1768008	.	+	0	Parent=Os06t0133000-01
Chr06	irgsp1_rep	CDS	1768101	1768201	.	+	2	Parent=Os06t0133000-01
Chr06	irgsp1_rep	CDS	1768292	1768401	.	+	0	Parent=Os06t0133000-01
Chr06	irgsp1_rep	CDS	1768523	1768766	.	+	1	Parent=Os06t0133000-01
Chr06	irgsp1_rep	CDS	1768884	1769060	.	+	0	Parent=Os06t0133000-01
Chr06	irgsp1_rep	CDS	1769304	1769495	.	+	0	Parent=Os06t0133000-01
Chr06	irgsp1_rep	CDS	1769602	1769688	.	+	0	Parent=Os06t0133000-01
Chr06	irgsp1_rep	CDS	1769798	1769926	.	+	0	Parent=Os06t0133000-01
Chr06	irgsp1_rep	CDS	1770284	1770400	.	+	0	Parent=Os06t0133000-01
Chr06	irgsp1_rep	three_prime_UTR	1770401	1770574	.	+	.	Parent=Os06t0133000-01
Chr06	irgsp1_rep	mRNA	1766470	1770653	.	+	.	ID=Os06t0133000-02;Name=Os06t0133000-02;Locus_id=Os06g0133000;RAP-DB Gene Symbol Synonym(s)=WX1%2C wx (Wx(am))%2C Wx%2C WX-B%2C GBSS-I%2C GBSS%2C OsGBSSI%2C GBSS1%2C OsGBSS1%2C GBSSI;RAP-DB Gene Name Synonym(s)=GLUTINOUS ENDOSPERM%2C glutinous endosperm%2C waxy%2C Waxy%2C WAXY%2C "Granule-bound starch synthase 1%2C chloroplastic/amyloplastic"%2C Granule-bound starch synthase I%2C UDP-glycogen synthase%2C "Granule-bound starch synthase%2C chloroplast precursor"%2C glycogen [starch] synthase%2C Granule-bound glycogen synthase%2C UDPG-glycogen transglucosylase%2C uridine diphosphoglucose-glycogen glucosyltransferase%2C glycogen [starch] synthetase%2C Granule-bound glycogen [starch] synthase%2C UDPG-glycogen synthetase%2C granule bound starch synthase I%2C granule-bound starch synthase 1%2C granule-bound starch synthase I;CGSNL Gene Symbol=WX1;CGSNL Gene Name=GLUTINOUS ENDOSPERM;Oryzabase Gene Symbol Synonym(s)=wx (Wx(am))%2C Wx%2C WX-B%2C GBSS-I%2C GBSS%2C OsGBSSI%2C GBSS1%2C OsGBSS1%2C GBSSI%2C GSS%2C OsWx;Oryzabase Gene Name Synonym(s)=glutinous endosperm%2C waxy%2C Waxy%2C WAXY%2C "Granule-bound starch synthase 1%2C chloroplastic/amyloplastic"%2C Granule-bound starch synthase I%2C UDP-glycogen synthase%2C "Granule-bound starch synthase%2C chloroplast precursor"%2C glycogen [starch] synthase%2C Granule-bound glycogen synthase%2C UDPG-glycogen transglucosylase%2C uridine diphosphoglucose-glycogen glucosyltransferase%2C glycogen [starch] synthetase%2C Granule-bound glycogen [starch] synthase%2C UDPG-glycogen synthetase%2C granule bound starch synthase I%2C granule-bound starch synthase 1%2C granule-bound starch synthase I;Note=Granule-bound starch synthase 1%2C Starch biosynthesis;Transcript_evidence=X62134;ORF_evidence=Q0DEV5;GO=Biological Process: biosynthetic process (GO:0009058),Biological Process: glucan biosynthetic process (GO:0009250),Molecular Function: starch synthase activity (GO:0009011);InterPro=Glycogen/starch synthase%2C ADP-glucose type (IPR011835),Starch synthase%2C catalytic domain (IPR013534),Glycosyl transferase%2C family 1 (IPR001296);Manual Curation=March 12%2C 2010;Literature_PMID=1377969,15232694,18430767,21595523;Oryzabase=744
Chr06	irgsp1_rep	five_prime_UTR	1766470	1766920	.	+	.	Parent=Os06t0133000-02
Chr06	irgsp1_rep	CDS	1766921	1767259	.	+	0	Parent=Os06t0133000-02
Chr06	irgsp1_rep	CDS	1767373	1767453	.	+	0	Parent=Os06t0133000-02
Chr06	irgsp1_rep	CDS	1767561	1767659	.	+	0	Parent=Os06t0133000-02
Chr06	irgsp1_rep	CDS	1767756	1767845	.	+	0	Parent=Os06t0133000-02
Chr06	irgsp1_rep	CDS	1767945	1768008	.	+	0	Parent=Os06t0133000-02
Chr06	irgsp1_rep	CDS	1768101	1768201	.	+	2	Parent=Os06t0133000-02
Chr06	irgsp1_rep	CDS	1768292	1768401	.	+	0	Parent=Os06t0133000-02
Chr06	irgsp1_rep	CDS	1768523	1768766	.	+	1	Parent=Os06t0133000-02
Chr06	irgsp1_rep	CDS	1768884	1769060	.	+	0	Parent=Os06t0133000-02
Chr06	irgsp1_rep	CDS	1769304	1769495	.	+	0	Parent=Os06t0133000-02
Chr06	irgsp1_rep	CDS	1769602	1769688	.	+	0	Parent=Os06t0133000-02
Chr06	irgsp1_rep	CDS	1769798	1769926	.	+	0	Parent=Os06t0133000-02
Chr06	irgsp1_rep	CDS	1770284	1770400	.	+	0	Parent=Os06t0133000-02
Chr06	irgsp1_rep	three_prime_UTR	1770401	1770653	.	+	.	Parent=Os06t0133000-02
Chr06	irgsp1_rep	mRNA	1769541	1770459	.	-	.	ID=Os06t0133100-01;Name=Os06t0133100-01;Locus_id=Os06g0133100;Note=Hypothetical protein.;Transcript_evidence=AK109227 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-156-E11;Oryzabase=20472;Expression=AK109227;TENOR=Os06t0133100-01;KEGG=Os06t0133100-01
Chr06	irgsp1_rep	five_prime_UTR	1770275	1770459	.	-	.	Parent=Os06t0133100-01
Chr06	irgsp1_rep	CDS	1770238	1770274	.	-	0	Parent=Os06t0133100-01
Chr06	irgsp1_rep	CDS	1769714	1769919	.	-	2	Parent=Os06t0133100-01
Chr06	irgsp1_rep	three_prime_UTR	1769541	1769713	.	-	.	Parent=Os06t0133100-01
Chr06	irgsp1_rep	mRNA	1776726	1777351	.	+	.	ID=Os06t0133200-01;Name=Os06t0133200-01;Locus_id=Os06g0133200;Note=Conserved hypothetical protein.;Transcript_evidence=AK108349 (DDBJ%2C Best hit);ORF_evidence=B6T051 (UniProt);NIAS_FLcDNA=002-142-B10;Expression=AK108349;TENOR=Os06t0133200-01;KEGG=Os06t0133200-01
Chr06	irgsp1_rep	five_prime_UTR	1776726	1776868	.	+	.	Parent=Os06t0133200-01
Chr06	irgsp1_rep	CDS	1776869	1777165	.	+	0	Parent=Os06t0133200-01
Chr06	irgsp1_rep	three_prime_UTR	1777166	1777351	.	+	.	Parent=Os06t0133200-01
Chr06	irgsp1_rep	mRNA	1780570	1780854	.	+	.	ID=Os06t0133300-00;Name=Os06t0133300-00;Locus_id=Os06g0133300;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B8B285 (UniProt);TENOR=Os06t0133300-00;KEGG=Os06t0133300-00
Chr06	irgsp1_rep	CDS	1780570	1780854	.	+	0	Parent=Os06t0133300-00
Chr06	irgsp1_rep	mRNA	1784324	1784813	.	+	.	ID=Os06t0133400-01;Name=Os06t0133400-01;Locus_id=Os06g0133400;Note=Conserved hypothetical protein.;Transcript_evidence=AK240870 (DDBJ%2C Best hit);ORF_evidence=Q5VRP7 (UniProt);NIAS_FLcDNA=J065024H16;TENOR=Os06t0133400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	1784324	1784671	.	+	0	Parent=Os06t0133400-01
Chr06	irgsp1_rep	three_prime_UTR	1784672	1784813	.	+	.	Parent=Os06t0133400-01
Chr06	irgsp1_rep	mRNA	1785455	1785802	.	-	.	ID=Os06t0133500-00;Name=Os06t0133500-00;Locus_id=Os06g0133500;Note=Conserved hypothetical protein.;Transcript_evidence=EU723765 (DDBJ%2C Best hit);ORF_evidence=NP_001056709.1 (RefSeq);TENOR=Os06t0133500-00;KEGG=Os06t0133500-00
Chr06	irgsp1_rep	five_prime_UTR	1785779	1785802	.	-	.	Parent=Os06t0133500-00
Chr06	irgsp1_rep	CDS	1785506	1785778	.	-	0	Parent=Os06t0133500-00
Chr06	irgsp1_rep	three_prime_UTR	1785455	1785505	.	-	.	Parent=Os06t0133500-00
Chr06	irgsp1_rep	mRNA	1789916	1791294	.	+	.	ID=Os06t0133600-01;Name=Os06t0133600-01;Locus_id=Os06g0133600;Note=Phosphate-induced protein 1 conserved region family protein.;Transcript_evidence=AK105690 (DDBJ%2C Best hit);ORF_evidence=NP_199968.1 (RefSeq);InterPro=Phosphate-induced protein 1 (IPR006766);NIAS_FLcDNA=001-201-C03;Expression=AK105690;TENOR=Os06t0133600-01;KEGG=Os06t0133600-01
Chr06	irgsp1_rep	five_prime_UTR	1789916	1790038	.	+	.	Parent=Os06t0133600-01
Chr06	irgsp1_rep	CDS	1790039	1791085	.	+	0	Parent=Os06t0133600-01
Chr06	irgsp1_rep	three_prime_UTR	1791086	1791294	.	+	.	Parent=Os06t0133600-01
Chr06	irgsp1_rep	mRNA	1789946	1791291	.	+	.	ID=Os06t0133600-02;Name=Os06t0133600-02;Locus_id=Os06g0133600;Note=Phosphate-induced protein 1 conserved region family protein.;Transcript_evidence=AK068474 (DDBJ%2C Best hit);ORF_evidence=NP_199968.1 (RefSeq);InterPro=Phosphate-induced protein 1 (IPR006766);NIAS_FLcDNA=J013155H19;Expression=AK068474;TENOR=Os06t0133600-02;KEGG=Os06t0133600-02
Chr06	irgsp1_rep	five_prime_UTR	1789946	1790038	.	+	.	Parent=Os06t0133600-02
Chr06	irgsp1_rep	CDS	1790039	1791085	.	+	0	Parent=Os06t0133600-02
Chr06	irgsp1_rep	three_prime_UTR	1791086	1791291	.	+	.	Parent=Os06t0133600-02
Chr06	irgsp1_rep	mRNA	1808969	1812083	.	-	.	ID=Os06t0133800-01;Name=Os06t0133800-01;Locus_id=Os06g0133800;Oryzabase Gene Symbol Synonym(s)=OsTK%2C TK;Oryzabase Gene Name Synonym(s)=Transketolase;Note=Similar to Transferase.;Transcript_evidence=AK067452 (DDBJ%2C Best hit);ORF_evidence=Q7SIC9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transketolase activity (GO:0004802);InterPro=Transketolase%2C N-terminal (IPR005474),Transketolase-like%2C pyrimidine-binding domain (IPR005475),Transketolase%2C C-terminal (IPR005476),Transketolase%2C bacterial-like (IPR005478),Transketolase%2C C-terminal/Pyruvate-ferredoxin oxidoreductase%2C domain II (IPR009014),Transketolase-like%2C C-terminal (IPR015941);NIAS_FLcDNA=J013107D17;Oryzabase=12460;Expression=AK067452;TENOR=Os06t0133800-01;KEGG=Os06t0133800-01 (EC:2.2.1.1)
Chr06	irgsp1_rep	CDS	1811787	1812083	.	-	0	Parent=Os06t0133800-01
Chr06	irgsp1_rep	CDS	1811301	1811391	.	-	0	Parent=Os06t0133800-01
Chr06	irgsp1_rep	CDS	1811095	1811200	.	-	2	Parent=Os06t0133800-01
Chr06	irgsp1_rep	CDS	1810723	1811005	.	-	1	Parent=Os06t0133800-01
Chr06	irgsp1_rep	CDS	1810496	1810644	.	-	0	Parent=Os06t0133800-01
Chr06	irgsp1_rep	CDS	1810254	1810407	.	-	1	Parent=Os06t0133800-01
Chr06	irgsp1_rep	CDS	1809211	1810167	.	-	0	Parent=Os06t0133800-01
Chr06	irgsp1_rep	three_prime_UTR	1808969	1809210	.	-	.	Parent=Os06t0133800-01
Chr06	irgsp1_rep	mRNA	1808989	1810092	.	-	.	ID=Os06t0133800-02;Name=Os06t0133800-02;Locus_id=Os06g0133800;Oryzabase Gene Symbol Synonym(s)=OsTK%2C TK;Oryzabase Gene Name Synonym(s)=Transketolase;Note=Similar to Transketolase%2C chloroplastic.;Transcript_evidence=AK119542 (DDBJ%2C Best hit);ORF_evidence=Q7SIC9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Transketolase-like%2C pyrimidine-binding domain (IPR005475),Transketolase%2C C-terminal (IPR005476),Transketolase%2C C-terminal/Pyruvate-ferredoxin oxidoreductase%2C domain II (IPR009014),Transketolase-like%2C C-terminal (IPR015941);NIAS_FLcDNA=001-204-D07;Oryzabase=12460;Expression=AK119542;TENOR=Os06t0133800-02;KEGG=Os06t0133800-02 (EC:2.2.1.1)
Chr06	irgsp1_rep	CDS	1809211	1810092	.	-	0	Parent=Os06t0133800-02
Chr06	irgsp1_rep	three_prime_UTR	1808989	1809210	.	-	.	Parent=Os06t0133800-02
Chr06	irgsp1_rep	mRNA	1816266	1819747	.	+	.	ID=Os06t0133900-01;Name=Os06t0133900-01;Locus_id=Os06g0133900;RAP-DB Gene Symbol Synonym(s)=EPSPS%2C EPSPs%2C OsEPSPS;RAP-DB Gene Name Synonym(s)=ENOLPYRUVYLSHIKIMATE PHOSPHATE SYNTHASE%2C 5-enolpyruvylshikimate-3-phosphate synthase%2C EPSP synthase;CGSNL Gene Symbol=EPSPS;CGSNL Gene Name=ENOLPYRUVYLSHIKIMATE PHOSPHATE SYNTHASE;Oryzabase Gene Symbol Synonym(s)=EPSPs;Oryzabase Gene Name Synonym(s)=5-enolpyruvylshikimate-3-phosphate synthase%2C EPSP synthase;Note=5-enolpyruvylshikimate-3-phosphate synthase;Transcript_evidence=AF413082,AB052962 (Shimokita);ORF_evidence=Q93VK6;GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: 3-phosphoshikimate 1-carboxyvinyltransferase activity (GO:0003866),Molecular Function: transferase activity%2C transferring alkyl or aryl (other than methyl) groups (GO:0016765);InterPro=3-phosphoshikimate 1-carboxyvinyltransferase (IPR006264),RNA 3'-terminal phosphate cyclase/enolpyruvate transferase%2C alpha/beta (IPR013792),Enolpyruvate transferase domain (IPR001986),3-phosphoshikimate 1-carboxyvinyltransferase%2C conserved site (IPR023193);Manual Curation=February 17%2C 2015;Literature_PMID=15716045;Oryzabase=14661;TENOR=Os06t0133900-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	1816266	1816277	.	+	.	Parent=Os06t0133900-01
Chr06	irgsp1_rep	CDS	1816278	1816589	.	+	0	Parent=Os06t0133900-01
Chr06	irgsp1_rep	CDS	1817294	1817538	.	+	0	Parent=Os06t0133900-01
Chr06	irgsp1_rep	CDS	1817620	1817773	.	+	1	Parent=Os06t0133900-01
Chr06	irgsp1_rep	CDS	1818051	1818265	.	+	0	Parent=Os06t0133900-01
Chr06	irgsp1_rep	CDS	1818359	1818476	.	+	1	Parent=Os06t0133900-01
Chr06	irgsp1_rep	CDS	1818693	1818903	.	+	0	Parent=Os06t0133900-01
Chr06	irgsp1_rep	CDS	1819141	1819202	.	+	2	Parent=Os06t0133900-01
Chr06	irgsp1_rep	CDS	1819314	1819532	.	+	0	Parent=Os06t0133900-01
Chr06	irgsp1_rep	three_prime_UTR	1819533	1819747	.	+	.	Parent=Os06t0133900-01
Chr06	irgsp1_rep	mRNA	1820113	1822028	.	-	.	ID=Os06t0134000-01;Name=Os06t0134000-01;Locus_id=Os06g0134000;CGSNL Gene Symbol=RPS20;CGSNL Gene Name=RIBOSOMAL PROTEIN S20;Oryzabase Gene Symbol Synonym(s)=rps20;Oryzabase Gene Name Synonym(s)=ribosomal protein small subunit 20%2C r-protein S20%2C ribosomal protein S20;Note=Similar to 40S ribosomal protein S20.;Transcript_evidence=AK062184 (DDBJ%2C Best hit),AK120319 (DDBJ%2C Best hit);ORF_evidence=P35686 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: small ribosomal subunit (GO:0015935),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S10 (IPR001848),Ribosomal protein S10%2C eukaryotic/archaeal (IPR005729),Ribosomal protein S10%2C conserved site (IPR018268);NIAS_FLcDNA=001-046-E02,J013056N13;Oryzabase=14662;TENOR=Os06t0134000-01
Chr06	irgsp1_rep	five_prime_UTR	1821932	1822028	.	-	.	Parent=Os06t0134000-01
Chr06	irgsp1_rep	CDS	1821802	1821931	.	-	0	Parent=Os06t0134000-01
Chr06	irgsp1_rep	CDS	1821586	1821699	.	-	2	Parent=Os06t0134000-01
Chr06	irgsp1_rep	CDS	1820324	1820466	.	-	2	Parent=Os06t0134000-01
Chr06	irgsp1_rep	three_prime_UTR	1820113	1820323	.	-	.	Parent=Os06t0134000-01
Chr06	irgsp1_rep	mRNA	1822809	1826383	.	-	.	ID=Os06t0134050-01;Name=Os06t0134050-01;Locus_id=Os06g0134050;Note=Similar to EMB1067 (EMBRYO DEFECTIVE 1067)%3B tRNA 2'-phosphotransferase.;Transcript_evidence=AK102796 (DDBJ%2C Best hit);ORF_evidence=NP_182058.2 (RefSeq);GO=Biological Process: tRNA splicing%2C via endonucleolytic cleavage and ligation (GO:0006388),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Phosphotransferase KptA/Tpt1 (IPR002745);NIAS_FLcDNA=J033108B21;Expression=AK102796;TENOR=Os06t0134050-01;KEGG=Os06t0134050-01 (EC:2.7.1.160)
Chr06	irgsp1_rep	five_prime_UTR	1826360	1826383	.	-	.	Parent=Os06t0134050-01
Chr06	irgsp1_rep	CDS	1826103	1826359	.	-	0	Parent=Os06t0134050-01
Chr06	irgsp1_rep	CDS	1825856	1826003	.	-	1	Parent=Os06t0134050-01
Chr06	irgsp1_rep	CDS	1825593	1825682	.	-	0	Parent=Os06t0134050-01
Chr06	irgsp1_rep	CDS	1823796	1823850	.	-	0	Parent=Os06t0134050-01
Chr06	irgsp1_rep	CDS	1823597	1823719	.	-	2	Parent=Os06t0134050-01
Chr06	irgsp1_rep	CDS	1823319	1823375	.	-	2	Parent=Os06t0134050-01
Chr06	irgsp1_rep	CDS	1823094	1823224	.	-	2	Parent=Os06t0134050-01
Chr06	irgsp1_rep	three_prime_UTR	1822809	1823093	.	-	.	Parent=Os06t0134050-01
Chr06	irgsp1_rep	mRNA	1833279	1834503	.	+	.	ID=Os06t0134200-01;Name=Os06t0134200-01;Locus_id=Os06g0134200;Note=Hypothetical conserved gene.;Transcript_evidence=AK111432 (DDBJ%2C Best hit);ORF_evidence=B9FRC9 (UniProt);NIAS_FLcDNA=002-182-H09;Expression=AK111432;TENOR=Os06t0134200-01;KEGG=Os06t0134200-01
Chr06	irgsp1_rep	five_prime_UTR	1833279	1833280	.	+	.	Parent=Os06t0134200-01
Chr06	irgsp1_rep	CDS	1833281	1833436	.	+	0	Parent=Os06t0134200-01
Chr06	irgsp1_rep	CDS	1833633	1833681	.	+	0	Parent=Os06t0134200-01
Chr06	irgsp1_rep	CDS	1833935	1833945	.	+	2	Parent=Os06t0134200-01
Chr06	irgsp1_rep	three_prime_UTR	1833946	1834503	.	+	.	Parent=Os06t0134200-01
Chr06	irgsp1_rep	mRNA	1838612	1842799	.	-	.	ID=Os06t0134300-01;Name=Os06t0134300-01;Locus_id=Os06g0134300;Note=Protein of unknown function DUF3615 domain containing protein.;Transcript_evidence=AK071534 (DDBJ%2C Best hit);ORF_evidence=B8B291 (UniProt);InterPro=Protein of unknown function DUF3615 (IPR022059);NIAS_FLcDNA=J023106E03;Expression=AK071534;TENOR=Os06t0134300-01;KEGG=Os06t0134300-01
Chr06	irgsp1_rep	five_prime_UTR	1842712	1842799	.	-	.	Parent=Os06t0134300-01
Chr06	irgsp1_rep	CDS	1842461	1842711	.	-	0	Parent=Os06t0134300-01
Chr06	irgsp1_rep	CDS	1840865	1841236	.	-	1	Parent=Os06t0134300-01
Chr06	irgsp1_rep	CDS	1840093	1840273	.	-	1	Parent=Os06t0134300-01
Chr06	irgsp1_rep	CDS	1839792	1839990	.	-	0	Parent=Os06t0134300-01
Chr06	irgsp1_rep	CDS	1839121	1839263	.	-	2	Parent=Os06t0134300-01
Chr06	irgsp1_rep	CDS	1838977	1839024	.	-	0	Parent=Os06t0134300-01
Chr06	irgsp1_rep	CDS	1838838	1838894	.	-	0	Parent=Os06t0134300-01
Chr06	irgsp1_rep	three_prime_UTR	1838612	1838837	.	-	.	Parent=Os06t0134300-01
Chr06	irgsp1_rep	mRNA	1844991	1848535	.	-	.	ID=Os06t0134400-01;Name=Os06t0134400-01;Locus_id=Os06g0134400;Note=Protein of unknown function DUF3615 domain containing protein.;Transcript_evidence=AK068098 (DDBJ%2C Best hit);ORF_evidence=B8B292 (UniProt);InterPro=Protein of unknown function DUF3615 (IPR022059);NIAS_FLcDNA=J013135D15;Expression=AK068098;TENOR=Os06t0134400-01;KEGG=Os06t0134400-01
Chr06	irgsp1_rep	five_prime_UTR	1848410	1848535	.	-	.	Parent=Os06t0134400-01
Chr06	irgsp1_rep	CDS	1848204	1848409	.	-	0	Parent=Os06t0134400-01
Chr06	irgsp1_rep	CDS	1847246	1847623	.	-	1	Parent=Os06t0134400-01
Chr06	irgsp1_rep	CDS	1846350	1846530	.	-	1	Parent=Os06t0134400-01
Chr06	irgsp1_rep	CDS	1846066	1846276	.	-	0	Parent=Os06t0134400-01
Chr06	irgsp1_rep	CDS	1845518	1845645	.	-	2	Parent=Os06t0134400-01
Chr06	irgsp1_rep	CDS	1845364	1845402	.	-	0	Parent=Os06t0134400-01
Chr06	irgsp1_rep	CDS	1845169	1845249	.	-	0	Parent=Os06t0134400-01
Chr06	irgsp1_rep	three_prime_UTR	1844991	1845168	.	-	.	Parent=Os06t0134400-01
Chr06	irgsp1_rep	mRNA	1848037	1848751	.	+	.	ID=Os06t0134433-01;Name=Os06t0134433-01;Locus_id=Os06g0134433;Note=Non-protein coding transcript.;Transcript_evidence=AK108212 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-140-D11;TENOR=Os06t0134433-01
Chr06	irgsp1_rep	exon	1848037	1848751	.	+	.	Parent=Os06t0134433-01
Chr06	irgsp1_rep	mRNA	1849976	1853673	.	-	.	ID=Os06t0134466-01;Name=Os06t0134466-01;Locus_id=Os06g0134466;Note=Hypothetical conserved gene.;Transcript_evidence=AK241422 (DDBJ%2C Best hit);ORF_evidence=Q5VNV4 (UniProt);InterPro=Protein of unknown function DUF3615 (IPR022059);NIAS_FLcDNA=J065161I12;TENOR=Os06t0134466-01;KEGG=Os06t0134466-01
Chr06	irgsp1_rep	CDS	1853585	1853673	.	-	0	Parent=Os06t0134466-01
Chr06	irgsp1_rep	CDS	1852769	1853122	.	-	1	Parent=Os06t0134466-01
Chr06	irgsp1_rep	CDS	1851389	1851569	.	-	1	Parent=Os06t0134466-01
Chr06	irgsp1_rep	CDS	1851086	1851293	.	-	0	Parent=Os06t0134466-01
Chr06	irgsp1_rep	CDS	1850705	1850832	.	-	2	Parent=Os06t0134466-01
Chr06	irgsp1_rep	CDS	1850572	1850613	.	-	0	Parent=Os06t0134466-01
Chr06	irgsp1_rep	CDS	1850446	1850487	.	-	0	Parent=Os06t0134466-01
Chr06	irgsp1_rep	three_prime_UTR	1850440	1850445	.	-	.	Parent=Os06t0134466-01
Chr06	irgsp1_rep	three_prime_UTR	1850308	1850349	.	-	.	Parent=Os06t0134466-01
Chr06	irgsp1_rep	three_prime_UTR	1849976	1850205	.	-	.	Parent=Os06t0134466-01
Chr06	irgsp1_rep	mRNA	1857523	1861053	.	-	.	ID=Os06t0134500-01;Name=Os06t0134500-01;Locus_id=Os06g0134500;Note=Protein of unknown function DUF3615 domain containing protein.;Transcript_evidence=AK063440 (DDBJ%2C Best hit);ORF_evidence=B8B293 (UniProt);InterPro=Protein of unknown function DUF3615 (IPR022059);NIAS_FLcDNA=001-115-E11;Expression=AK063440;TENOR=Os06t0134500-01;KEGG=Os06t0134500-01
Chr06	irgsp1_rep	five_prime_UTR	1860853	1861053	.	-	.	Parent=Os06t0134500-01
Chr06	irgsp1_rep	CDS	1860713	1860852	.	-	0	Parent=Os06t0134500-01
Chr06	irgsp1_rep	CDS	1859573	1859926	.	-	1	Parent=Os06t0134500-01
Chr06	irgsp1_rep	CDS	1858625	1858805	.	-	1	Parent=Os06t0134500-01
Chr06	irgsp1_rep	CDS	1858319	1858526	.	-	0	Parent=Os06t0134500-01
Chr06	irgsp1_rep	CDS	1857916	1858043	.	-	2	Parent=Os06t0134500-01
Chr06	irgsp1_rep	CDS	1857764	1857805	.	-	0	Parent=Os06t0134500-01
Chr06	irgsp1_rep	CDS	1857625	1857666	.	-	0	Parent=Os06t0134500-01
Chr06	irgsp1_rep	three_prime_UTR	1857523	1857624	.	-	.	Parent=Os06t0134500-01
Chr06	irgsp1_rep	mRNA	1864573	1868211	.	+	.	ID=Os06t0134700-01;Name=Os06t0134700-01;Locus_id=Os06g0134700;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK103589 (DDBJ%2C Best hit);ORF_evidence=A3B850 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J033133C07;Expression=AK103589;TENOR=Os06t0134700-01;KEGG=Os06t0134700-01
Chr06	irgsp1_rep	five_prime_UTR	1864573	1864574	.	+	.	Parent=Os06t0134700-01
Chr06	irgsp1_rep	CDS	1864575	1864986	.	+	0	Parent=Os06t0134700-01
Chr06	irgsp1_rep	CDS	1866009	1866269	.	+	2	Parent=Os06t0134700-01
Chr06	irgsp1_rep	CDS	1866354	1867229	.	+	2	Parent=Os06t0134700-01
Chr06	irgsp1_rep	CDS	1867352	1867821	.	+	2	Parent=Os06t0134700-01
Chr06	irgsp1_rep	three_prime_UTR	1867822	1868211	.	+	.	Parent=Os06t0134700-01
Chr06	irgsp1_rep	mRNA	1865933	1867802	.	-	.	ID=Os06t0134750-00;Name=Os06t0134750-00;Locus_id=Os06g0134750;Note=Hypothetical gene.;Transcript_evidence=BT065932 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0134750-00;KEGG=Os06t0134750-00
Chr06	irgsp1_rep	five_prime_UTR	1867740	1867802	.	-	.	Parent=Os06t0134750-00
Chr06	irgsp1_rep	CDS	1867344	1867739	.	-	0	Parent=Os06t0134750-00
Chr06	irgsp1_rep	CDS	1867158	1867175	.	-	0	Parent=Os06t0134750-00
Chr06	irgsp1_rep	three_prime_UTR	1865933	1867157	.	-	.	Parent=Os06t0134750-00
Chr06	irgsp1_rep	mRNA	1872646	1875893	.	-	.	ID=Os06t0134800-01;Name=Os06t0134800-01;Locus_id=Os06g0134800;Note=Folate-binding%2C YgfZ domain containing protein.;Transcript_evidence=AK063692 (DDBJ%2C Best hit);ORF_evidence=NP_001147280.1 (RefSeq);GO=Biological Process: glycine catabolic process (GO:0006546),Cellular Component: cytoplasm (GO:0005737),Molecular Function: aminomethyltransferase activity (GO:0004047);InterPro=Glycine cleavage T-protein%2C N-terminal (IPR006222),Glycine cleavage T-protein%2C C-terminal barrel (IPR013977),YgfZ/GcvT conserved site (IPR017703);NIAS_FLcDNA=001-119-F10;Expression=AK063692;TENOR=Os06t0134800-01;KEGG=Os06t0134800-01
Chr06	irgsp1_rep	five_prime_UTR	1875877	1875893	.	-	.	Parent=Os06t0134800-01
Chr06	irgsp1_rep	CDS	1875428	1875876	.	-	0	Parent=Os06t0134800-01
Chr06	irgsp1_rep	CDS	1874344	1874597	.	-	1	Parent=Os06t0134800-01
Chr06	irgsp1_rep	CDS	1874147	1874245	.	-	2	Parent=Os06t0134800-01
Chr06	irgsp1_rep	CDS	1873297	1873455	.	-	2	Parent=Os06t0134800-01
Chr06	irgsp1_rep	CDS	1872963	1873207	.	-	2	Parent=Os06t0134800-01
Chr06	irgsp1_rep	three_prime_UTR	1872646	1872962	.	-	.	Parent=Os06t0134800-01
Chr06	irgsp1_rep	mRNA	1876620	1880252	.	-	.	ID=Os06t0134900-01;Name=Os06t0134900-01;Locus_id=Os06g0134900;Note=Conserved hypothetical protein.;Transcript_evidence=AK103205 (DDBJ%2C Best hit);ORF_evidence=B8B295 (UniProt);NIAS_FLcDNA=J033122E01;Expression=AK103205;TENOR=Os06t0134900-01;KEGG=Os06t0134900-01
Chr06	irgsp1_rep	five_prime_UTR	1880129	1880252	.	-	.	Parent=Os06t0134900-01
Chr06	irgsp1_rep	five_prime_UTR	1879574	1879594	.	-	.	Parent=Os06t0134900-01
Chr06	irgsp1_rep	CDS	1879219	1879573	.	-	0	Parent=Os06t0134900-01
Chr06	irgsp1_rep	CDS	1878958	1879121	.	-	2	Parent=Os06t0134900-01
Chr06	irgsp1_rep	CDS	1878796	1878876	.	-	0	Parent=Os06t0134900-01
Chr06	irgsp1_rep	CDS	1878565	1878640	.	-	0	Parent=Os06t0134900-01
Chr06	irgsp1_rep	CDS	1878393	1878491	.	-	2	Parent=Os06t0134900-01
Chr06	irgsp1_rep	CDS	1876999	1877126	.	-	2	Parent=Os06t0134900-01
Chr06	irgsp1_rep	three_prime_UTR	1876620	1876998	.	-	.	Parent=Os06t0134900-01
Chr06	irgsp1_rep	mRNA	1880537	1890909	.	+	.	ID=Os06t0135000-01;Name=Os06t0135000-01;Locus_id=Os06g0135000;Note=Similar to Hypersensitive-induced reaction protein 4.;Transcript_evidence=AK067979 (DDBJ%2C Best hit);ORF_evidence=B6TTQ8 (UniProt);NIAS_FLcDNA=J013125I24;TENOR=Os06t0135000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	1880537	1880808	.	+	.	Parent=Os06t0135000-01
Chr06	irgsp1_rep	five_prime_UTR	1880905	1880915	.	+	.	Parent=Os06t0135000-01
Chr06	irgsp1_rep	CDS	1880916	1881006	.	+	0	Parent=Os06t0135000-01
Chr06	irgsp1_rep	CDS	1888409	1888554	.	+	2	Parent=Os06t0135000-01
Chr06	irgsp1_rep	three_prime_UTR	1888555	1890909	.	+	.	Parent=Os06t0135000-01
Chr06	irgsp1_rep	mRNA	1893171	1894618	.	+	.	ID=Os06t0135300-01;Name=Os06t0135300-01;Locus_id=Os06g0135300;Note=Hypothetical protein.;Transcript_evidence=AK241403 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065159A10;TENOR=Os06t0135300-01;KEGG=Os06t0135300-01
Chr06	irgsp1_rep	five_prime_UTR	1893171	1893430	.	+	.	Parent=Os06t0135300-01
Chr06	irgsp1_rep	five_prime_UTR	1893528	1893631	.	+	.	Parent=Os06t0135300-01
Chr06	irgsp1_rep	five_prime_UTR	1893935	1894089	.	+	.	Parent=Os06t0135300-01
Chr06	irgsp1_rep	CDS	1894090	1894365	.	+	0	Parent=Os06t0135300-01
Chr06	irgsp1_rep	three_prime_UTR	1894366	1894618	.	+	.	Parent=Os06t0135300-01
Chr06	irgsp1_rep	mRNA	1893929	1894333	.	-	.	ID=Os06t0135460-00;Name=Os06t0135460-00;Locus_id=Os06g0135460;Note=Similar to Lipoxygenase.;Transcript_evidence=AK251886 (DDBJ);ORF_evidence=C5XES4 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on single donors with incorporation of molecular oxygen%2C incorporation of two atoms of oxygen (GO:0016702),Molecular Function: metal ion binding (GO:0046872);InterPro=Lipoxygenase (IPR000907),Lipoxygenase%2C C-terminal (IPR013819);TENOR=Os06t0135460-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	1894307	1894333	.	-	.	Parent=Os06t0135460-00
Chr06	irgsp1_rep	CDS	1893929	1894306	.	-	0	Parent=Os06t0135460-00
Chr06	irgsp1_rep	mRNA	1900868	1908946	.	-	.	ID=Os06t0135900-01;Name=Os06t0135900-01;Locus_id=Os06g0135900;Note=Similar to Sec1p-like protein 2 (Fragment).;Transcript_evidence=AK100230 (DDBJ%2C Best hit);ORF_evidence=Q5VNU3 (UniProt);GO=Biological Process: vesicle docking involved in exocytosis (GO:0006904),Biological Process: vesicle-mediated transport (GO:0016192);InterPro=Sec1-like protein (IPR001619);NIAS_FLcDNA=J023049I19;Expression=AK100230;TENOR=Os06t0135900-01;KEGG=Os06t0135900-01
Chr06	irgsp1_rep	five_prime_UTR	1908902	1908946	.	-	.	Parent=Os06t0135900-01
Chr06	irgsp1_rep	CDS	1908829	1908901	.	-	0	Parent=Os06t0135900-01
Chr06	irgsp1_rep	CDS	1908657	1908715	.	-	2	Parent=Os06t0135900-01
Chr06	irgsp1_rep	CDS	1908381	1908462	.	-	0	Parent=Os06t0135900-01
Chr06	irgsp1_rep	CDS	1908088	1908166	.	-	2	Parent=Os06t0135900-01
Chr06	irgsp1_rep	CDS	1907700	1907750	.	-	1	Parent=Os06t0135900-01
Chr06	irgsp1_rep	CDS	1907497	1907593	.	-	1	Parent=Os06t0135900-01
Chr06	irgsp1_rep	CDS	1907383	1907415	.	-	0	Parent=Os06t0135900-01
Chr06	irgsp1_rep	CDS	1906783	1906909	.	-	0	Parent=Os06t0135900-01
Chr06	irgsp1_rep	CDS	1906001	1906188	.	-	2	Parent=Os06t0135900-01
Chr06	irgsp1_rep	CDS	1905811	1905894	.	-	0	Parent=Os06t0135900-01
Chr06	irgsp1_rep	CDS	1905637	1905732	.	-	0	Parent=Os06t0135900-01
Chr06	irgsp1_rep	CDS	1905484	1905554	.	-	0	Parent=Os06t0135900-01
Chr06	irgsp1_rep	CDS	1904133	1904229	.	-	1	Parent=Os06t0135900-01
Chr06	irgsp1_rep	CDS	1903752	1903877	.	-	0	Parent=Os06t0135900-01
Chr06	irgsp1_rep	CDS	1903567	1903662	.	-	0	Parent=Os06t0135900-01
Chr06	irgsp1_rep	CDS	1902846	1902965	.	-	0	Parent=Os06t0135900-01
Chr06	irgsp1_rep	CDS	1902688	1902769	.	-	0	Parent=Os06t0135900-01
Chr06	irgsp1_rep	CDS	1902313	1902320	.	-	2	Parent=Os06t0135900-01
Chr06	irgsp1_rep	three_prime_UTR	1902127	1902312	.	-	.	Parent=Os06t0135900-01
Chr06	irgsp1_rep	three_prime_UTR	1901910	1902003	.	-	.	Parent=Os06t0135900-01
Chr06	irgsp1_rep	three_prime_UTR	1901736	1901825	.	-	.	Parent=Os06t0135900-01
Chr06	irgsp1_rep	three_prime_UTR	1901459	1901557	.	-	.	Parent=Os06t0135900-01
Chr06	irgsp1_rep	three_prime_UTR	1900868	1901317	.	-	.	Parent=Os06t0135900-01
Chr06	irgsp1_rep	mRNA	1901740	1908476	.	+	.	ID=Os06t0135950-00;Name=Os06t0135950-00;Locus_id=Os06g0135950;Note=Non-protein coding transcript.;Transcript_evidence=tplb0032b21 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os06t0135950-00
Chr06	irgsp1_rep	exon	1901740	1901810	.	+	.	Parent=Os06t0135950-00
Chr06	irgsp1_rep	exon	1901891	1901983	.	+	.	Parent=Os06t0135950-00
Chr06	irgsp1_rep	exon	1902106	1902343	.	+	.	Parent=Os06t0135950-00
Chr06	irgsp1_rep	exon	1902782	1902992	.	+	.	Parent=Os06t0135950-00
Chr06	irgsp1_rep	exon	1903687	1903887	.	+	.	Parent=Os06t0135950-00
Chr06	irgsp1_rep	exon	1904145	1904231	.	+	.	Parent=Os06t0135950-00
Chr06	irgsp1_rep	exon	1905482	1905593	.	+	.	Parent=Os06t0135950-00
Chr06	irgsp1_rep	exon	1905757	1905887	.	+	.	Parent=Os06t0135950-00
Chr06	irgsp1_rep	exon	1905998	1906191	.	+	.	Parent=Os06t0135950-00
Chr06	irgsp1_rep	exon	1907334	1907620	.	+	.	Parent=Os06t0135950-00
Chr06	irgsp1_rep	exon	1908064	1908166	.	+	.	Parent=Os06t0135950-00
Chr06	irgsp1_rep	exon	1908381	1908476	.	+	.	Parent=Os06t0135950-00
Chr06	irgsp1_rep	mRNA	1909700	1913030	.	-	.	ID=Os06t0136000-01;Name=Os06t0136000-01;Locus_id=Os06g0136000;RAP-DB Gene Symbol Synonym(s)=OsHIR3;RAP-DB Gene Name Synonym(s)=hypersensitive induced reaction 3;CGSNL Gene Symbol=HIR3;CGSNL Gene Name=HYPERSENSITIVE INDUCED REACTION 3;Oryzabase Gene Symbol Synonym(s)=OsHIR3;Oryzabase Gene Name Synonym(s)=hypersensitive induced reaction 3;Note=Hypersensitive induced reaction protein%2C Resistance against viruses and bacterial pathogens;Transcript_evidence=AK060303;ORF_evidence=Q5VNU2;InterPro=Band 7/SPFH domain superfamily (IPR036013),Band 7 domain (IPR001107);NIAS_FLcDNA=001-007-A02;Manual Curation=February 12%2C 2019;Literature_PMID=30730076;Oryzabase=23031;Expression=AK060303;TENOR=Os06t0136000-01;KEGG=Os06t0136000-01
Chr06	irgsp1_rep	five_prime_UTR	1912875	1913030	.	-	.	Parent=Os06t0136000-01
Chr06	irgsp1_rep	CDS	1912680	1912874	.	-	0	Parent=Os06t0136000-01
Chr06	irgsp1_rep	CDS	1911881	1912001	.	-	0	Parent=Os06t0136000-01
Chr06	irgsp1_rep	CDS	1911703	1911794	.	-	2	Parent=Os06t0136000-01
Chr06	irgsp1_rep	CDS	1910836	1910932	.	-	0	Parent=Os06t0136000-01
Chr06	irgsp1_rep	CDS	1909930	1910291	.	-	2	Parent=Os06t0136000-01
Chr06	irgsp1_rep	three_prime_UTR	1909700	1909929	.	-	.	Parent=Os06t0136000-01
Chr06	irgsp1_rep	mRNA	1909695	1912980	.	-	.	ID=Os06t0136000-02;Name=Os06t0136000-02;Locus_id=Os06g0136000;CGSNL Gene Symbol=HIR3;CGSNL Gene Name=HYPERSENSITIVE INDUCED REACTION 3;Oryzabase Gene Symbol Synonym(s)=OsHIR3;Oryzabase Gene Name Synonym(s)=hypersensitive induced reaction 3;Note=Similar to Hypersensitive-induced reaction protein 4.;Transcript_evidence=AK102678 (DDBJ%2C Best hit);ORF_evidence=B6TTQ8 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Band 7 protein (IPR001107),Stomatin (IPR001972);NIAS_FLcDNA=J033102H16;Oryzabase=23031;TENOR=Os06t0136000-02
Chr06	irgsp1_rep	five_prime_UTR	1912875	1912980	.	-	.	Parent=Os06t0136000-02
Chr06	irgsp1_rep	CDS	1912680	1912874	.	-	0	Parent=Os06t0136000-02
Chr06	irgsp1_rep	CDS	1911881	1912001	.	-	0	Parent=Os06t0136000-02
Chr06	irgsp1_rep	CDS	1911703	1911794	.	-	2	Parent=Os06t0136000-02
Chr06	irgsp1_rep	CDS	1910836	1910932	.	-	0	Parent=Os06t0136000-02
Chr06	irgsp1_rep	CDS	1909930	1910291	.	-	2	Parent=Os06t0136000-02
Chr06	irgsp1_rep	three_prime_UTR	1909695	1909929	.	-	.	Parent=Os06t0136000-02
Chr06	irgsp1_rep	mRNA	1914224	1918007	.	-	.	ID=Os06t0136100-01;Name=Os06t0136100-01;Locus_id=Os06g0136100;Note=Protein of unknown function DUF3615 domain containing protein.;Transcript_evidence=AK073180 (DDBJ%2C Best hit);ORF_evidence=B8B299 (UniProt);InterPro=Protein of unknown function DUF3615 (IPR022059);NIAS_FLcDNA=J033000O24;Expression=AK073180;TENOR=Os06t0136100-01;KEGG=Os06t0136100-01
Chr06	irgsp1_rep	five_prime_UTR	1917946	1918007	.	-	.	Parent=Os06t0136100-01
Chr06	irgsp1_rep	CDS	1917752	1917945	.	-	0	Parent=Os06t0136100-01
Chr06	irgsp1_rep	CDS	1916375	1916749	.	-	1	Parent=Os06t0136100-01
Chr06	irgsp1_rep	CDS	1915549	1915720	.	-	1	Parent=Os06t0136100-01
Chr06	irgsp1_rep	CDS	1915241	1915448	.	-	0	Parent=Os06t0136100-01
Chr06	irgsp1_rep	CDS	1914728	1914867	.	-	2	Parent=Os06t0136100-01
Chr06	irgsp1_rep	CDS	1914601	1914639	.	-	0	Parent=Os06t0136100-01
Chr06	irgsp1_rep	CDS	1914416	1914514	.	-	0	Parent=Os06t0136100-01
Chr06	irgsp1_rep	three_prime_UTR	1914224	1914415	.	-	.	Parent=Os06t0136100-01
Chr06	irgsp1_rep	mRNA	1914192	1915403	.	-	.	ID=Os06t0136100-02;Name=Os06t0136100-02;Locus_id=Os06g0136100;Note=Hypothetical conserved gene.;Transcript_evidence=AK063023 (DDBJ%2C Best hit);ORF_evidence=B8B299 (UniProt);InterPro=Protein of unknown function DUF3615 (IPR022059);NIAS_FLcDNA=001-110-B07;Expression=AK063023;TENOR=Os06t0136100-02;KEGG=Os06t0136100-02
Chr06	irgsp1_rep	CDS	1915241	1915403	.	-	0	Parent=Os06t0136100-02
Chr06	irgsp1_rep	CDS	1914728	1914867	.	-	2	Parent=Os06t0136100-02
Chr06	irgsp1_rep	CDS	1914601	1914639	.	-	0	Parent=Os06t0136100-02
Chr06	irgsp1_rep	CDS	1914416	1914514	.	-	0	Parent=Os06t0136100-02
Chr06	irgsp1_rep	three_prime_UTR	1914192	1914415	.	-	.	Parent=Os06t0136100-02
Chr06	irgsp1_rep	mRNA	1921202	1929311	.	-	.	ID=Os06t0136201-01;Name=Os06t0136201-01;Locus_id=Os06g0136201;Note=Hypothetical gene.;Transcript_evidence=AK288873 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090078I24;TENOR=Os06t0136201-01;KEGG=Os06t0136201-01
Chr06	irgsp1_rep	five_prime_UTR	1922871	1929311	.	-	.	Parent=Os06t0136201-01
Chr06	irgsp1_rep	CDS	1922367	1922870	.	-	0	Parent=Os06t0136201-01
Chr06	irgsp1_rep	three_prime_UTR	1921202	1922366	.	-	.	Parent=Os06t0136201-01
Chr06	irgsp1_rep	mRNA	1922429	1923593	.	+	.	ID=Os06t0136300-01;Name=Os06t0136300-01;Locus_id=Os06g0136300;Note=Similar to OSIGBa0142C11.2 protein.;Transcript_evidence=AK109132 (DDBJ%2C Best hit);ORF_evidence=Q01L57 (UniProt);NIAS_FLcDNA=002-155-D11;Expression=AK109132;TENOR=Os06t0136300-01;KEGG=Os06t0136300-01
Chr06	irgsp1_rep	five_prime_UTR	1922429	1922521	.	+	.	Parent=Os06t0136300-01
Chr06	irgsp1_rep	CDS	1922522	1922813	.	+	0	Parent=Os06t0136300-01
Chr06	irgsp1_rep	CDS	1923013	1923092	.	+	2	Parent=Os06t0136300-01
Chr06	irgsp1_rep	three_prime_UTR	1923093	1923593	.	+	.	Parent=Os06t0136300-01
Chr06	irgsp1_rep	mRNA	1927256	1930767	.	+	.	ID=Os06t0136500-01;Name=Os06t0136500-01;Locus_id=Os06g0136500;Oryzabase Gene Symbol Synonym(s)=OsCNIH1%2C CNIH1;Oryzabase Gene Name Synonym(s)=cornichon 1;Note=Cornichon family protein.;Transcript_evidence=AK068303 (DDBJ%2C Best hit);ORF_evidence=B6T6Y8 (UniProt);GO=Biological Process: intracellular signal transduction (GO:0035556),Cellular Component: membrane (GO:0016020);InterPro=Cornichon (IPR003377);NIAS_FLcDNA=J013146K07;Oryzabase=19300;Expression=AK068303;TENOR=Os06t0136500-01;KEGG=Os06t0136500-01
Chr06	irgsp1_rep	five_prime_UTR	1927256	1927465	.	+	.	Parent=Os06t0136500-01
Chr06	irgsp1_rep	CDS	1927466	1927531	.	+	0	Parent=Os06t0136500-01
Chr06	irgsp1_rep	CDS	1927967	1928152	.	+	0	Parent=Os06t0136500-01
Chr06	irgsp1_rep	three_prime_UTR	1928153	1930230	.	+	.	Parent=Os06t0136500-01
Chr06	irgsp1_rep	three_prime_UTR	1930327	1930767	.	+	.	Parent=Os06t0136500-01
Chr06	irgsp1_rep	mRNA	1931305	1936376	.	-	.	ID=Os06t0136600-01;Name=Os06t0136600-01;Locus_id=Os06g0136600;Oryzabase Gene Symbol Synonym(s)=OsEno5%2C Eno5;Oryzabase Gene Name Synonym(s)=Glyceraldehyde 3-phosphate dehydrogenase%2C enolase 5;Note=Similar to Enolase 1 (EC 4.2.1.11) (2-phosphoglycerate dehydratase 1) (2-phospho- D-glycerate hydro-lyase 1).;Transcript_evidence=AK069316 (DDBJ%2C Best hit);ORF_evidence=B8B2A2 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Cellular Component: phosphopyruvate hydratase complex (GO:0000015),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: phosphopyruvate hydratase activity (GO:0004634);InterPro=Enolase (IPR000941),Enolase%2C conserved site (IPR020809),Enolase%2C C-terminal (IPR020810),Enolase%2C N-terminal (IPR020811);NIAS_FLcDNA=J023013C22;Oryzabase=12453;Expression=AK069316;TENOR=Os06t0136600-01;KEGG=Os06t0136600-01 (EC:4.2.1.11)
Chr06	irgsp1_rep	five_prime_UTR	1936297	1936376	.	-	.	Parent=Os06t0136600-01
Chr06	irgsp1_rep	CDS	1936228	1936296	.	-	0	Parent=Os06t0136600-01
Chr06	irgsp1_rep	CDS	1936010	1936073	.	-	0	Parent=Os06t0136600-01
Chr06	irgsp1_rep	CDS	1935365	1935429	.	-	2	Parent=Os06t0136600-01
Chr06	irgsp1_rep	CDS	1934928	1934975	.	-	0	Parent=Os06t0136600-01
Chr06	irgsp1_rep	CDS	1934729	1934815	.	-	0	Parent=Os06t0136600-01
Chr06	irgsp1_rep	CDS	1934544	1934624	.	-	0	Parent=Os06t0136600-01
Chr06	irgsp1_rep	CDS	1934361	1934462	.	-	0	Parent=Os06t0136600-01
Chr06	irgsp1_rep	CDS	1934202	1934282	.	-	0	Parent=Os06t0136600-01
Chr06	irgsp1_rep	CDS	1934053	1934127	.	-	0	Parent=Os06t0136600-01
Chr06	irgsp1_rep	CDS	1933213	1933275	.	-	0	Parent=Os06t0136600-01
Chr06	irgsp1_rep	CDS	1933023	1933103	.	-	0	Parent=Os06t0136600-01
Chr06	irgsp1_rep	CDS	1932704	1932898	.	-	0	Parent=Os06t0136600-01
Chr06	irgsp1_rep	CDS	1932559	1932609	.	-	0	Parent=Os06t0136600-01
Chr06	irgsp1_rep	CDS	1932381	1932469	.	-	0	Parent=Os06t0136600-01
Chr06	irgsp1_rep	CDS	1932244	1932295	.	-	1	Parent=Os06t0136600-01
Chr06	irgsp1_rep	CDS	1932104	1932160	.	-	0	Parent=Os06t0136600-01
Chr06	irgsp1_rep	CDS	1931560	1931640	.	-	0	Parent=Os06t0136600-01
Chr06	irgsp1_rep	three_prime_UTR	1931305	1931559	.	-	.	Parent=Os06t0136600-01
Chr06	irgsp1_rep	mRNA	1931322	1935407	.	-	.	ID=Os06t0136600-02;Name=Os06t0136600-02;Locus_id=Os06g0136600;Oryzabase Gene Symbol Synonym(s)=OsEno5%2C Eno5;Oryzabase Gene Name Synonym(s)=Glyceraldehyde 3-phosphate dehydrogenase%2C enolase 5;Note=Similar to Enolase.;Transcript_evidence=AK104904 (DDBJ%2C Best hit);ORF_evidence=B8B2A2 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Cellular Component: phosphopyruvate hydratase complex (GO:0000015),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: phosphopyruvate hydratase activity (GO:0004634);InterPro=Enolase (IPR000941),Enolase%2C conserved site (IPR020809),Enolase%2C C-terminal (IPR020810),Enolase%2C N-terminal (IPR020811);NIAS_FLcDNA=001-046-F09;Oryzabase=12453;Expression=AK104904;TENOR=Os06t0136600-02;KEGG=Os06t0136600-02 (EC:4.2.1.11)
Chr06	irgsp1_rep	five_prime_UTR	1935407	1935407	.	-	.	Parent=Os06t0136600-02
Chr06	irgsp1_rep	CDS	1935365	1935406	.	-	0	Parent=Os06t0136600-02
Chr06	irgsp1_rep	CDS	1934928	1934975	.	-	0	Parent=Os06t0136600-02
Chr06	irgsp1_rep	CDS	1934729	1934815	.	-	0	Parent=Os06t0136600-02
Chr06	irgsp1_rep	CDS	1934544	1934624	.	-	0	Parent=Os06t0136600-02
Chr06	irgsp1_rep	CDS	1934361	1934462	.	-	0	Parent=Os06t0136600-02
Chr06	irgsp1_rep	CDS	1934202	1934282	.	-	0	Parent=Os06t0136600-02
Chr06	irgsp1_rep	CDS	1934053	1934127	.	-	0	Parent=Os06t0136600-02
Chr06	irgsp1_rep	CDS	1933213	1933275	.	-	0	Parent=Os06t0136600-02
Chr06	irgsp1_rep	CDS	1933023	1933103	.	-	0	Parent=Os06t0136600-02
Chr06	irgsp1_rep	CDS	1932704	1932898	.	-	0	Parent=Os06t0136600-02
Chr06	irgsp1_rep	CDS	1932559	1932609	.	-	0	Parent=Os06t0136600-02
Chr06	irgsp1_rep	CDS	1932381	1932469	.	-	0	Parent=Os06t0136600-02
Chr06	irgsp1_rep	CDS	1932244	1932295	.	-	1	Parent=Os06t0136600-02
Chr06	irgsp1_rep	CDS	1932104	1932160	.	-	0	Parent=Os06t0136600-02
Chr06	irgsp1_rep	CDS	1931560	1931640	.	-	0	Parent=Os06t0136600-02
Chr06	irgsp1_rep	three_prime_UTR	1931322	1931559	.	-	.	Parent=Os06t0136600-02
Chr06	irgsp1_rep	mRNA	1934052	1934465	.	+	.	ID=Os06t0136650-00;Name=Os06t0136650-00;Locus_id=Os06g0136650;Note=Non-protein coding transcript.;Transcript_evidence=BT084318 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0136650-00
Chr06	irgsp1_rep	exon	1934052	1934123	.	+	.	Parent=Os06t0136650-00
Chr06	irgsp1_rep	exon	1934199	1934281	.	+	.	Parent=Os06t0136650-00
Chr06	irgsp1_rep	exon	1934360	1934465	.	+	.	Parent=Os06t0136650-00
Chr06	irgsp1_rep	mRNA	1937857	1948665	.	+	.	ID=Os06t0136700-01;Name=Os06t0136700-01;Locus_id=Os06g0136700;Note=Steroid nuclear receptor%2C ligand-binding domain containing protein.;Transcript_evidence=AK065081 (DDBJ%2C Best hit);ORF_evidence=B9FRD7 (UniProt);NIAS_FLcDNA=J013001L08;Expression=AK065081;TENOR=Os06t0136700-01;KEGG=Os06t0136700-01
Chr06	irgsp1_rep	five_prime_UTR	1937857	1937934	.	+	.	Parent=Os06t0136700-01
Chr06	irgsp1_rep	CDS	1937935	1937944	.	+	0	Parent=Os06t0136700-01
Chr06	irgsp1_rep	CDS	1938039	1938313	.	+	2	Parent=Os06t0136700-01
Chr06	irgsp1_rep	CDS	1938735	1939087	.	+	0	Parent=Os06t0136700-01
Chr06	irgsp1_rep	CDS	1939606	1939723	.	+	1	Parent=Os06t0136700-01
Chr06	irgsp1_rep	CDS	1939831	1939954	.	+	0	Parent=Os06t0136700-01
Chr06	irgsp1_rep	CDS	1940060	1940140	.	+	2	Parent=Os06t0136700-01
Chr06	irgsp1_rep	CDS	1940397	1940616	.	+	2	Parent=Os06t0136700-01
Chr06	irgsp1_rep	CDS	1940956	1941025	.	+	1	Parent=Os06t0136700-01
Chr06	irgsp1_rep	CDS	1941091	1941144	.	+	0	Parent=Os06t0136700-01
Chr06	irgsp1_rep	CDS	1941544	1941612	.	+	0	Parent=Os06t0136700-01
Chr06	irgsp1_rep	CDS	1942146	1942202	.	+	0	Parent=Os06t0136700-01
Chr06	irgsp1_rep	CDS	1942315	1942422	.	+	0	Parent=Os06t0136700-01
Chr06	irgsp1_rep	CDS	1942511	1942583	.	+	0	Parent=Os06t0136700-01
Chr06	irgsp1_rep	CDS	1943045	1943088	.	+	2	Parent=Os06t0136700-01
Chr06	irgsp1_rep	CDS	1943670	1943759	.	+	0	Parent=Os06t0136700-01
Chr06	irgsp1_rep	CDS	1944148	1944329	.	+	0	Parent=Os06t0136700-01
Chr06	irgsp1_rep	CDS	1944560	1944668	.	+	1	Parent=Os06t0136700-01
Chr06	irgsp1_rep	CDS	1945007	1945105	.	+	0	Parent=Os06t0136700-01
Chr06	irgsp1_rep	CDS	1945204	1945497	.	+	0	Parent=Os06t0136700-01
Chr06	irgsp1_rep	three_prime_UTR	1945498	1945612	.	+	.	Parent=Os06t0136700-01
Chr06	irgsp1_rep	three_prime_UTR	1945929	1946538	.	+	.	Parent=Os06t0136700-01
Chr06	irgsp1_rep	three_prime_UTR	1946619	1948374	.	+	.	Parent=Os06t0136700-01
Chr06	irgsp1_rep	three_prime_UTR	1948484	1948665	.	+	.	Parent=Os06t0136700-01
Chr06	irgsp1_rep	mRNA	1949464	1953284	.	+	.	ID=Os06t0136800-01;Name=Os06t0136800-01;Locus_id=Os06g0136800;Oryzabase Gene Symbol Synonym(s)=OsClp9%2C CLP9;Oryzabase Gene Name Synonym(s)=Clp protease 9%2C CLP PROTEASE 9;Note=Peptidase S14%2C ClpP family protein.;Transcript_evidence=AK099815 (DDBJ%2C Best hit),AK061385 (DDBJ%2C Best hit),AK104375 (DDBJ%2C Best hit);ORF_evidence=B8B2A4 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S14%2C ClpP (IPR001907),Peptidase S14/S49 (IPR023562);NIAS_FLcDNA=J013099L17,006-305-A01,001-035-G04;Oryzabase=20036;TENOR=Os06t0136800-01
Chr06	irgsp1_rep	five_prime_UTR	1949464	1949504	.	+	.	Parent=Os06t0136800-01
Chr06	irgsp1_rep	CDS	1949505	1949587	.	+	0	Parent=Os06t0136800-01
Chr06	irgsp1_rep	CDS	1949710	1949756	.	+	1	Parent=Os06t0136800-01
Chr06	irgsp1_rep	CDS	1949865	1949937	.	+	2	Parent=Os06t0136800-01
Chr06	irgsp1_rep	CDS	1950407	1950527	.	+	1	Parent=Os06t0136800-01
Chr06	irgsp1_rep	CDS	1950638	1950775	.	+	0	Parent=Os06t0136800-01
Chr06	irgsp1_rep	CDS	1952082	1952198	.	+	0	Parent=Os06t0136800-01
Chr06	irgsp1_rep	CDS	1952290	1952358	.	+	0	Parent=Os06t0136800-01
Chr06	irgsp1_rep	CDS	1952462	1952557	.	+	0	Parent=Os06t0136800-01
Chr06	irgsp1_rep	CDS	1952833	1952982	.	+	0	Parent=Os06t0136800-01
Chr06	irgsp1_rep	three_prime_UTR	1952983	1953284	.	+	.	Parent=Os06t0136800-01
Chr06	irgsp1_rep	mRNA	1962306	1963580	.	-	.	ID=Os06t0136900-01;Name=Os06t0136900-01;Locus_id=Os06g0136900;RAP-DB Gene Symbol Synonym(s)=DP1;RAP-DB Gene Name Synonym(s)=DEPRESSED PALEA 1;CGSNL Gene Symbol=DP1;CGSNL Gene Name=DEPRESSED PALEA 1;Oryzabase Gene Symbol Synonym(s)=dp1%2C pa%2C DP1/PAL1%2C PAL1;Oryzabase Gene Name Synonym(s)=depressed palea1%2C depressed palea 1%2C depressed palea-1%2C DEPRESSED PALEA1%2C PALEALESS1;Note=Nuclear-localized AT-hook DNA binding protein%2C Regulation of palea development%2C Control of floral organ number;Transcript_evidence=AK107405;ORF_evidence=Q5VQ11;InterPro=PPC domain (IPR005175);NIAS_FLcDNA=002-127-E03;Manual Curation=February 20%2C 2018;Literature_PMID=29122595,21924254;Oryzabase=745;Expression=AK107405;TENOR=Os06t0136900-01;KEGG=Os06t0136900-01;Subcellular location=nucleus (GO:0005634)
Chr06	irgsp1_rep	five_prime_UTR	1963506	1963580	.	-	.	Parent=Os06t0136900-01
Chr06	irgsp1_rep	CDS	1962519	1963505	.	-	0	Parent=Os06t0136900-01
Chr06	irgsp1_rep	three_prime_UTR	1962306	1962518	.	-	.	Parent=Os06t0136900-01
Chr06	irgsp1_rep	mRNA	1973536	1976556	.	-	.	ID=Os06t0137100-01;Name=Os06t0137100-01;Locus_id=Os06g0137100;Note=Similar to predicted protein.;Transcript_evidence=AK242714 (DDBJ%2C Best hit);ORF_evidence=NP_563908.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J090041P11;TENOR=Os06t0137100-01;KEGG=Os06t0137100-01
Chr06	irgsp1_rep	five_prime_UTR	1976555	1976556	.	-	.	Parent=Os06t0137100-01
Chr06	irgsp1_rep	CDS	1976473	1976554	.	-	0	Parent=Os06t0137100-01
Chr06	irgsp1_rep	CDS	1976157	1976249	.	-	2	Parent=Os06t0137100-01
Chr06	irgsp1_rep	CDS	1975603	1975728	.	-	2	Parent=Os06t0137100-01
Chr06	irgsp1_rep	CDS	1975376	1975501	.	-	2	Parent=Os06t0137100-01
Chr06	irgsp1_rep	CDS	1974889	1975032	.	-	2	Parent=Os06t0137100-01
Chr06	irgsp1_rep	CDS	1974283	1974411	.	-	2	Parent=Os06t0137100-01
Chr06	irgsp1_rep	CDS	1973996	1974156	.	-	2	Parent=Os06t0137100-01
Chr06	irgsp1_rep	three_prime_UTR	1973536	1973995	.	-	.	Parent=Os06t0137100-01
Chr06	irgsp1_rep	mRNA	1978441	1981621	.	+	.	ID=Os06t0137166-00;Name=Os06t0137166-00;Locus_id=Os06g0137166;Note=Hypothetical gene.;Transcript_evidence=BT085237 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0137166-00
Chr06	irgsp1_rep	five_prime_UTR	1978441	1978531	.	+	.	Parent=Os06t0137166-00
Chr06	irgsp1_rep	five_prime_UTR	1979194	1979377	.	+	.	Parent=Os06t0137166-00
Chr06	irgsp1_rep	CDS	1979378	1979398	.	+	0	Parent=Os06t0137166-00
Chr06	irgsp1_rep	CDS	1979577	1979651	.	+	0	Parent=Os06t0137166-00
Chr06	irgsp1_rep	CDS	1979831	1979986	.	+	0	Parent=Os06t0137166-00
Chr06	irgsp1_rep	three_prime_UTR	1979987	1980018	.	+	.	Parent=Os06t0137166-00
Chr06	irgsp1_rep	three_prime_UTR	1980117	1980257	.	+	.	Parent=Os06t0137166-00
Chr06	irgsp1_rep	three_prime_UTR	1980359	1980584	.	+	.	Parent=Os06t0137166-00
Chr06	irgsp1_rep	three_prime_UTR	1980695	1980862	.	+	.	Parent=Os06t0137166-00
Chr06	irgsp1_rep	three_prime_UTR	1981277	1981419	.	+	.	Parent=Os06t0137166-00
Chr06	irgsp1_rep	three_prime_UTR	1981519	1981621	.	+	.	Parent=Os06t0137166-00
Chr06	irgsp1_rep	mRNA	1990029	1993641	.	+	.	ID=Os06t0137300-01;Name=Os06t0137300-01;Locus_id=Os06g0137300;Note=YEATS family protein.;Transcript_evidence=AK109053 (DDBJ%2C Best hit);ORF_evidence=NP_199373.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634);InterPro=YEATS (IPR005033);NIAS_FLcDNA=002-154-E07;Expression=AK109053;TENOR=Os06t0137300-01;KEGG=Os06t0137300-01
Chr06	irgsp1_rep	five_prime_UTR	1990029	1990076	.	+	.	Parent=Os06t0137300-01
Chr06	irgsp1_rep	CDS	1990077	1990301	.	+	0	Parent=Os06t0137300-01
Chr06	irgsp1_rep	CDS	1990946	1991028	.	+	0	Parent=Os06t0137300-01
Chr06	irgsp1_rep	CDS	1991144	1991365	.	+	1	Parent=Os06t0137300-01
Chr06	irgsp1_rep	CDS	1991442	1991629	.	+	1	Parent=Os06t0137300-01
Chr06	irgsp1_rep	CDS	1991719	1991843	.	+	2	Parent=Os06t0137300-01
Chr06	irgsp1_rep	CDS	1993237	1993315	.	+	0	Parent=Os06t0137300-01
Chr06	irgsp1_rep	CDS	1993412	1993440	.	+	2	Parent=Os06t0137300-01
Chr06	irgsp1_rep	three_prime_UTR	1993441	1993641	.	+	.	Parent=Os06t0137300-01
Chr06	irgsp1_rep	mRNA	2000160	2000569	.	+	.	ID=Os06t0137400-00;Name=Os06t0137400-00;Locus_id=Os06g0137400;CGSNL Gene Symbol=SAUR24;CGSNL Gene Name=SMALL AUXIN-UP RNA 24;Oryzabase Gene Symbol Synonym(s)=OsSAUR24;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 24;Note=Hypothetical conserved gene.;Transcript_evidence=AK375274 (DDBJ);ORF_evidence=XP_002310856.1 (RefSeq);InterPro=Auxin responsive SAUR protein (IPR003676);Oryzabase=9149;TENOR=Os06t0137400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	2000160	2000209	.	+	.	Parent=Os06t0137400-00
Chr06	irgsp1_rep	CDS	2000210	2000569	.	+	0	Parent=Os06t0137400-00
Chr06	irgsp1_rep	mRNA	2003684	2009068	.	-	.	ID=Os06t0137500-01;Name=Os06t0137500-01;Locus_id=Os06g0137500;Note=Similar to predicted protein.;Transcript_evidence=AK121945 (DDBJ%2C Best hit);ORF_evidence=NP_567213.1 (RefSeq);GO=Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: ATP binding (GO:0005524);InterPro=Anticodon-binding (IPR004154),Brix domain (IPR007109);NIAS_FLcDNA=J033107G04;Expression=AK121945;TENOR=Os06t0137500-01;KEGG=Os06t0137500-01
Chr06	irgsp1_rep	five_prime_UTR	2009008	2009068	.	-	.	Parent=Os06t0137500-01
Chr06	irgsp1_rep	CDS	2008753	2009007	.	-	0	Parent=Os06t0137500-01
Chr06	irgsp1_rep	CDS	2008563	2008643	.	-	0	Parent=Os06t0137500-01
Chr06	irgsp1_rep	CDS	2007453	2007548	.	-	0	Parent=Os06t0137500-01
Chr06	irgsp1_rep	CDS	2007216	2007299	.	-	0	Parent=Os06t0137500-01
Chr06	irgsp1_rep	CDS	2007065	2007134	.	-	0	Parent=Os06t0137500-01
Chr06	irgsp1_rep	CDS	2006903	2006985	.	-	2	Parent=Os06t0137500-01
Chr06	irgsp1_rep	CDS	2004993	2005072	.	-	0	Parent=Os06t0137500-01
Chr06	irgsp1_rep	CDS	2004764	2004862	.	-	1	Parent=Os06t0137500-01
Chr06	irgsp1_rep	CDS	2004369	2004474	.	-	1	Parent=Os06t0137500-01
Chr06	irgsp1_rep	CDS	2003974	2004063	.	-	0	Parent=Os06t0137500-01
Chr06	irgsp1_rep	CDS	2003840	2003878	.	-	0	Parent=Os06t0137500-01
Chr06	irgsp1_rep	three_prime_UTR	2003684	2003839	.	-	.	Parent=Os06t0137500-01
Chr06	irgsp1_rep	mRNA	2000872	2009052	.	-	.	ID=Os06t0137500-02;Name=Os06t0137500-02;Locus_id=Os06g0137500;Note=Brix domain containing protein.;Transcript_evidence=AK072896 (DDBJ%2C Best hit);ORF_evidence=NP_567213.1 (RefSeq);GO=Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: ATP binding (GO:0005524);InterPro=Anticodon-binding (IPR004154),Brix domain (IPR007109);NIAS_FLcDNA=J023145C13;Expression=AK072896;TENOR=Os06t0137500-02;KEGG=Os06t0137500-02
Chr06	irgsp1_rep	five_prime_UTR	2009008	2009052	.	-	.	Parent=Os06t0137500-02
Chr06	irgsp1_rep	CDS	2008753	2009007	.	-	0	Parent=Os06t0137500-02
Chr06	irgsp1_rep	CDS	2008563	2008643	.	-	0	Parent=Os06t0137500-02
Chr06	irgsp1_rep	CDS	2007453	2007548	.	-	0	Parent=Os06t0137500-02
Chr06	irgsp1_rep	CDS	2007216	2007299	.	-	0	Parent=Os06t0137500-02
Chr06	irgsp1_rep	CDS	2007065	2007134	.	-	0	Parent=Os06t0137500-02
Chr06	irgsp1_rep	CDS	2006903	2006985	.	-	2	Parent=Os06t0137500-02
Chr06	irgsp1_rep	CDS	2004993	2005072	.	-	0	Parent=Os06t0137500-02
Chr06	irgsp1_rep	CDS	2004764	2004862	.	-	1	Parent=Os06t0137500-02
Chr06	irgsp1_rep	CDS	2004369	2004474	.	-	1	Parent=Os06t0137500-02
Chr06	irgsp1_rep	CDS	2003974	2004063	.	-	0	Parent=Os06t0137500-02
Chr06	irgsp1_rep	CDS	2003439	2003573	.	-	0	Parent=Os06t0137500-02
Chr06	irgsp1_rep	three_prime_UTR	2003394	2003438	.	-	.	Parent=Os06t0137500-02
Chr06	irgsp1_rep	three_prime_UTR	2002860	2003013	.	-	.	Parent=Os06t0137500-02
Chr06	irgsp1_rep	three_prime_UTR	2000872	2002730	.	-	.	Parent=Os06t0137500-02
Chr06	irgsp1_rep	mRNA	2009996	2015659	.	+	.	ID=Os06t0137600-01;Name=Os06t0137600-01;Locus_id=Os06g0137600;Note=K homology-like%2C alpha/beta domain containing protein.;Transcript_evidence=AK099752 (DDBJ%2C Best hit);ORF_evidence=B6TDG2 (UniProt);GO=Biological Process: rRNA processing (GO:0006364);InterPro=Ribosome-binding factor A (IPR000238),K homology domain-like%2C alpha/beta (IPR015946),Ribosome-binding factor A%2C conserved site (IPR020053),Ribosome-binding factor A domain (IPR023799);NIAS_FLcDNA=J013092J10;Expression=AK099752;TENOR=Os06t0137600-01;KEGG=Os06t0137600-01
Chr06	irgsp1_rep	five_prime_UTR	2009996	2010132	.	+	.	Parent=Os06t0137600-01
Chr06	irgsp1_rep	CDS	2010133	2010432	.	+	0	Parent=Os06t0137600-01
Chr06	irgsp1_rep	CDS	2010542	2010715	.	+	0	Parent=Os06t0137600-01
Chr06	irgsp1_rep	CDS	2011276	2011431	.	+	0	Parent=Os06t0137600-01
Chr06	irgsp1_rep	three_prime_UTR	2011432	2011484	.	+	.	Parent=Os06t0137600-01
Chr06	irgsp1_rep	three_prime_UTR	2012188	2013062	.	+	.	Parent=Os06t0137600-01
Chr06	irgsp1_rep	three_prime_UTR	2013172	2014644	.	+	.	Parent=Os06t0137600-01
Chr06	irgsp1_rep	three_prime_UTR	2014823	2015659	.	+	.	Parent=Os06t0137600-01
Chr06	irgsp1_rep	mRNA	2009998	2012821	.	+	.	ID=Os06t0137600-02;Name=Os06t0137600-02;Locus_id=Os06g0137600;Note=K homology-like%2C alpha/beta domain containing protein.;Transcript_evidence=AK072214 (DDBJ%2C Best hit),AK059782 (DDBJ%2C Best hit);ORF_evidence=B6TDG2 (UniProt);GO=Biological Process: rRNA processing (GO:0006364);InterPro=Ribosome-binding factor A (IPR000238),K homology domain-like%2C alpha/beta (IPR015946),Ribosome-binding factor A%2C conserved site (IPR020053),Ribosome-binding factor A domain (IPR023799);NIAS_FLcDNA=J013166G10,006-204-C10;TENOR=Os06t0137600-02
Chr06	irgsp1_rep	five_prime_UTR	2009998	2010132	.	+	.	Parent=Os06t0137600-02
Chr06	irgsp1_rep	CDS	2010133	2010432	.	+	0	Parent=Os06t0137600-02
Chr06	irgsp1_rep	CDS	2010542	2010715	.	+	0	Parent=Os06t0137600-02
Chr06	irgsp1_rep	CDS	2011276	2011431	.	+	0	Parent=Os06t0137600-02
Chr06	irgsp1_rep	three_prime_UTR	2011432	2011484	.	+	.	Parent=Os06t0137600-02
Chr06	irgsp1_rep	three_prime_UTR	2012188	2012821	.	+	.	Parent=Os06t0137600-02
Chr06	irgsp1_rep	mRNA	2018053	2021997	.	-	.	ID=Os06t0137650-00;Name=Os06t0137650-00;Locus_id=Os06g0137650;Note=UDP-glucuronosyl/UDP-glucosyltransferase domain containing protein.;Transcript_evidence=AK373894 (DDBJ);ORF_evidence=NP_001173311.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os06t0137650-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	2021962	2021997	.	-	.	Parent=Os06t0137650-00
Chr06	irgsp1_rep	CDS	2021767	2021961	.	-	0	Parent=Os06t0137650-00
Chr06	irgsp1_rep	three_prime_UTR	2021761	2021766	.	-	.	Parent=Os06t0137650-00
Chr06	irgsp1_rep	three_prime_UTR	2018053	2018517	.	-	.	Parent=Os06t0137650-00
Chr06	irgsp1_rep	mRNA	2017778	2019351	.	+	.	ID=Os06t0137700-01;Name=Os06t0137700-01;Locus_id=Os06g0137700;Note=Similar to GDP-mannose 4%2C6 dehydratase 2.;Transcript_evidence=AK061097 (DDBJ%2C Best hit),AK073547 (DDBJ%2C Best hit);ORF_evidence=NP_001149057.1 (RefSeq);GO=Biological Process: GDP-mannose metabolic process (GO:0019673),Biological Process: cellular metabolic process (GO:0044237),Cellular Component: intracellular (GO:0005622),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: GDP-mannose 4%2C6-dehydratase activity (GO:0008446),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),GDP-mannose 4%2C6-dehydratase (IPR006368),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=006-207-A06,J033043A08;Expression=AK061097;TENOR=Os06t0137700-01;KEGG=Os06t0137700-01 (EC:4.2.1.47)
Chr06	irgsp1_rep	five_prime_UTR	2017778	2017843	.	+	.	Parent=Os06t0137700-01
Chr06	irgsp1_rep	CDS	2017844	2018971	.	+	0	Parent=Os06t0137700-01
Chr06	irgsp1_rep	three_prime_UTR	2018972	2019351	.	+	.	Parent=Os06t0137700-01
Chr06	irgsp1_rep	mRNA	2017926	2020679	.	+	.	ID=Os06t0137700-03;Name=Os06t0137700-03;Locus_id=Os06g0137700;Note=Similar to GDP-mannose 4%2C6 dehydratase 1 (EC 4.2.1.47) (GDP-D-mannose dehydratase 1) (GMD 1).;Transcript_evidence=AK106455 (DDBJ%2C Best hit);ORF_evidence=NP_001149057.1 (RefSeq);GO=Biological Process: GDP-mannose metabolic process (GO:0019673),Biological Process: cellular metabolic process (GO:0044237),Cellular Component: intracellular (GO:0005622),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: GDP-mannose 4%2C6-dehydratase activity (GO:0008446),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),GDP-mannose 4%2C6-dehydratase (IPR006368),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=002-103-F11;Expression=AK106455;TENOR=Os06t0137700-03;KEGG=Os06t0137700-03 (EC:4.2.1.47)
Chr06	irgsp1_rep	five_prime_UTR	2017926	2017927	.	+	.	Parent=Os06t0137700-03
Chr06	irgsp1_rep	CDS	2017928	2018399	.	+	0	Parent=Os06t0137700-03
Chr06	irgsp1_rep	CDS	2018454	2018971	.	+	2	Parent=Os06t0137700-03
Chr06	irgsp1_rep	three_prime_UTR	2018972	2019091	.	+	.	Parent=Os06t0137700-03
Chr06	irgsp1_rep	three_prime_UTR	2019436	2020679	.	+	.	Parent=Os06t0137700-03
Chr06	irgsp1_rep	mRNA	2027183	2027943	.	+	.	ID=Os06t0138000-01;Name=Os06t0138000-01;Locus_id=Os06g0138000;Note=Similar to IMB1.;Transcript_evidence=AK063880 (DDBJ%2C Best hit);ORF_evidence=B6UCC7 (UniProt);NIAS_FLcDNA=001-122-F07;Expression=AK063880;TENOR=Os06t0138000-01;KEGG=Os06t0138000-01
Chr06	irgsp1_rep	five_prime_UTR	2027183	2027184	.	+	.	Parent=Os06t0138000-01
Chr06	irgsp1_rep	CDS	2027185	2027243	.	+	0	Parent=Os06t0138000-01
Chr06	irgsp1_rep	CDS	2027359	2027509	.	+	1	Parent=Os06t0138000-01
Chr06	irgsp1_rep	CDS	2027598	2027762	.	+	0	Parent=Os06t0138000-01
Chr06	irgsp1_rep	three_prime_UTR	2027763	2027943	.	+	.	Parent=Os06t0138000-01
Chr06	irgsp1_rep	mRNA	2028122	2030211	.	-	.	ID=Os06t0138100-01;Name=Os06t0138100-01;Locus_id=Os06g0138100;Oryzabase Gene Symbol Synonym(s)=OsMSRA5%2C MSRA5;Oryzabase Gene Name Synonym(s)=Methionine sulfoxide reductase A5;Note=Methionine sulphoxide reductase A domain containing protein.;Transcript_evidence=AK069328 (DDBJ%2C Best hit);ORF_evidence=Q5VPG8 (UniProt);GO=Biological Process: protein metabolic process (GO:0019538),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on a sulfur group of donors%2C disulfide as acceptor (GO:0016671);InterPro=Peptide methionine sulphoxide reductase MsrA (IPR002569);NIAS_FLcDNA=J023012A19;Oryzabase=20908;Expression=AK069328;TENOR=Os06t0138100-01;KEGG=Os06t0138100-01 (EC:1.8.4.11)
Chr06	irgsp1_rep	five_prime_UTR	2030198	2030211	.	-	.	Parent=Os06t0138100-01
Chr06	irgsp1_rep	CDS	2029889	2030197	.	-	0	Parent=Os06t0138100-01
Chr06	irgsp1_rep	CDS	2029275	2029387	.	-	0	Parent=Os06t0138100-01
Chr06	irgsp1_rep	CDS	2028737	2028881	.	-	1	Parent=Os06t0138100-01
Chr06	irgsp1_rep	CDS	2028457	2028654	.	-	0	Parent=Os06t0138100-01
Chr06	irgsp1_rep	three_prime_UTR	2028122	2028456	.	-	.	Parent=Os06t0138100-01
Chr06	irgsp1_rep	mRNA	2030471	2034739	.	+	.	ID=Os06t0138200-01;Name=Os06t0138200-01;Locus_id=Os06g0138200;Note=2OG-Fe(II) oxygenase domain containing protein.;Transcript_evidence=AK073705 (DDBJ%2C Best hit);ORF_evidence=A1YKE1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=J033058M24;Expression=AK073705;TENOR=Os06t0138200-01;KEGG=Os06t0138200-01
Chr06	irgsp1_rep	five_prime_UTR	2030471	2030504	.	+	.	Parent=Os06t0138200-01
Chr06	irgsp1_rep	CDS	2030505	2030697	.	+	0	Parent=Os06t0138200-01
Chr06	irgsp1_rep	CDS	2030785	2031303	.	+	2	Parent=Os06t0138200-01
Chr06	irgsp1_rep	CDS	2032535	2032620	.	+	2	Parent=Os06t0138200-01
Chr06	irgsp1_rep	CDS	2032726	2033036	.	+	0	Parent=Os06t0138200-01
Chr06	irgsp1_rep	CDS	2033568	2033639	.	+	1	Parent=Os06t0138200-01
Chr06	irgsp1_rep	CDS	2033737	2034406	.	+	1	Parent=Os06t0138200-01
Chr06	irgsp1_rep	three_prime_UTR	2034407	2034739	.	+	.	Parent=Os06t0138200-01
Chr06	irgsp1_rep	mRNA	2030482	2031618	.	+	.	ID=Os06t0138200-02;Name=Os06t0138200-02;Locus_id=Os06g0138200;Note=Similar to Oxidoreductase.;Transcript_evidence=AK058914 (DDBJ%2C Best hit);ORF_evidence=A1YKE1 (UniProt);NIAS_FLcDNA=001-009-A02;Expression=AK058914;TENOR=Os06t0138200-02;KEGG=Os06t0138200-02
Chr06	irgsp1_rep	five_prime_UTR	2030482	2030504	.	+	.	Parent=Os06t0138200-02
Chr06	irgsp1_rep	CDS	2030505	2030697	.	+	0	Parent=Os06t0138200-02
Chr06	irgsp1_rep	CDS	2030785	2031314	.	+	2	Parent=Os06t0138200-02
Chr06	irgsp1_rep	three_prime_UTR	2031315	2031618	.	+	.	Parent=Os06t0138200-02
Chr06	irgsp1_rep	mRNA	2036651	2037778	.	+	.	ID=Os06t0138400-00;Name=Os06t0138400-00;Locus_id=Os06g0138400;Oryzabase Gene Symbol Synonym(s)=OsCAF1-6%2C OsCAF1D;Oryzabase Gene Name Synonym(s)=CCR4-associated factor 1-6%2C carbon catabolite repressor 4-associated factor 1-6%2C CCR4-associated factor 1D%2C carbon catabolite repressor 4-associated factor 1D;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5VPG5 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676);InterPro=Ribonuclease CAF1 (IPR006941),Ribonuclease H-like (IPR012337);Oryzabase=18265;TENOR=Os06t0138400-00;KEGG=Os06t0138400-00
Chr06	irgsp1_rep	CDS	2036651	2037778	.	+	0	Parent=Os06t0138400-00
Chr06	irgsp1_rep	mRNA	2039736	2041427	.	-	.	ID=Os06t0138600-01;Name=Os06t0138600-01;Locus_id=Os06g0138600;Note=Protein of unknown function DUF248%2C methyltransferase putative domain containing protein.;Transcript_evidence=AK066485 (DDBJ%2C Best hit);ORF_evidence=A2Y920 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Protein of unknown function DUF248%2C methyltransferase putative (IPR004159);NIAS_FLcDNA=J013068J24;Expression=AK066485;TENOR=Os06t0138600-01;KEGG=Os06t0138600-01
Chr06	irgsp1_rep	five_prime_UTR	2041289	2041427	.	-	.	Parent=Os06t0138600-01
Chr06	irgsp1_rep	CDS	2040137	2041288	.	-	0	Parent=Os06t0138600-01
Chr06	irgsp1_rep	three_prime_UTR	2039736	2040136	.	-	.	Parent=Os06t0138600-01
Chr06	irgsp1_rep	mRNA	2040042	2041334	.	-	.	ID=Os06t0138600-02;Name=Os06t0138600-02;Locus_id=Os06g0138600;Note=Protein of unknown function DUF248%2C methyltransferase putative domain containing protein.;Transcript_evidence=AK069536 (DDBJ%2C Best hit);ORF_evidence=A2Y920 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Protein of unknown function DUF248%2C methyltransferase putative (IPR004159);NIAS_FLcDNA=J023022B22;TENOR=Os06t0138600-02;KEGG=Os06t0138600-02
Chr06	irgsp1_rep	five_prime_UTR	2041289	2041334	.	-	.	Parent=Os06t0138600-02
Chr06	irgsp1_rep	CDS	2040137	2041288	.	-	0	Parent=Os06t0138600-02
Chr06	irgsp1_rep	three_prime_UTR	2040042	2040136	.	-	.	Parent=Os06t0138600-02
Chr06	irgsp1_rep	mRNA	2043908	2048319	.	-	.	ID=Os06t0138700-01;Name=Os06t0138700-01;Locus_id=Os06g0138700;Oryzabase Gene Symbol Synonym(s)=OsFbox290%2C Os_F0343;Oryzabase Gene Name Synonym(s)=F-box protein 290;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK119470 (DDBJ%2C Best hit);ORF_evidence=Q01K44 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810);NIAS_FLcDNA=001-134-A09;Oryzabase=17070;TENOR=Os06t0138700-01;KEGG=Os06t0138700-01
Chr06	irgsp1_rep	five_prime_UTR	2048223	2048319	.	-	.	Parent=Os06t0138700-01
Chr06	irgsp1_rep	CDS	2048132	2048222	.	-	0	Parent=Os06t0138700-01
Chr06	irgsp1_rep	CDS	2046190	2046290	.	-	2	Parent=Os06t0138700-01
Chr06	irgsp1_rep	CDS	2044390	2045229	.	-	0	Parent=Os06t0138700-01
Chr06	irgsp1_rep	CDS	2044158	2044304	.	-	0	Parent=Os06t0138700-01
Chr06	irgsp1_rep	CDS	2043908	2044063	.	-	0	Parent=Os06t0138700-01
Chr06	irgsp1_rep	mRNA	2050318	2051654	.	+	.	ID=Os06t0138900-01;Name=Os06t0138900-01;Locus_id=Os06g0138900;Note=Conserved hypothetical protein.;Transcript_evidence=AK105368 (DDBJ%2C Best hit);ORF_evidence=A2Y922 (UniProt);NIAS_FLcDNA=001-119-H06;Expression=AK105368;TENOR=Os06t0138900-01;KEGG=Os06t0138900-01
Chr06	irgsp1_rep	five_prime_UTR	2050318	2050401	.	+	.	Parent=Os06t0138900-01
Chr06	irgsp1_rep	CDS	2050402	2051454	.	+	0	Parent=Os06t0138900-01
Chr06	irgsp1_rep	three_prime_UTR	2051455	2051654	.	+	.	Parent=Os06t0138900-01
Chr06	irgsp1_rep	mRNA	2057221	2062223	.	-	.	ID=Os06t0139000-01;Name=Os06t0139000-01;Locus_id=Os06g0139000;RAP-DB Gene Symbol Synonym(s)=DDF1;RAP-DB Gene Name Synonym(s)=Dwarf and deformed flower 1;Note=LRR-type F-box protein%2C Vegetative growth%2C Floral organ specification;Transcript_evidence=AK073027;ORF_evidence=Q5VPF9;GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box-like domain superfamily (IPR036047);NIAS_FLcDNA=J023148M09;Manual Curation=August 5%2C 2020;Literature_PMID=22897567;Oryzabase=17588;TENOR=Os06t0139000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.;Comment=There might be sequencing error in this region.;Subcellular location=nucleus (GO:0005634)
Chr06	irgsp1_rep	five_prime_UTR	2061988	2062223	.	-	.	Parent=Os06t0139000-01
Chr06	irgsp1_rep	five_prime_UTR	2060145	2060153	.	-	.	Parent=Os06t0139000-01
Chr06	irgsp1_rep	CDS	2060052	2060144	.	-	0	Parent=Os06t0139000-01
Chr06	irgsp1_rep	CDS	2058281	2059120	.	-	0	Parent=Os06t0139000-01
Chr06	irgsp1_rep	CDS	2058033	2058179	.	-	0	Parent=Os06t0139000-01
Chr06	irgsp1_rep	CDS	2057558	2057938	.	-	0	Parent=Os06t0139000-01
Chr06	irgsp1_rep	three_prime_UTR	2057221	2057557	.	-	.	Parent=Os06t0139000-01
Chr06	irgsp1_rep	mRNA	2064174	2065510	.	+	.	ID=Os06t0139150-01;Name=Os06t0139150-01;Locus_id=Os06g0139150;Note=Conserved hypothetical protein.;Transcript_evidence=AK105368 (DDBJ%2C Best hit);ORF_evidence=A2Y922 (UniProt);NIAS_FLcDNA=001-119-H06;Expression=AK105368;TENOR=Os06t0139150-01;KEGG=Os06t0139150-01
Chr06	irgsp1_rep	five_prime_UTR	2064174	2064257	.	+	.	Parent=Os06t0139150-01
Chr06	irgsp1_rep	CDS	2064258	2065310	.	+	0	Parent=Os06t0139150-01
Chr06	irgsp1_rep	three_prime_UTR	2065311	2065510	.	+	.	Parent=Os06t0139150-01
Chr06	irgsp1_rep	mRNA	2071507	2072928	.	-	.	ID=Os06t0139200-01;Name=Os06t0139200-01;Locus_id=Os06g0139200;Note=Hypothetical conserved gene.;Transcript_evidence=AK063737 (DDBJ%2C Best hit);ORF_evidence=B9FRE4 (UniProt);NIAS_FLcDNA=001-120-F04;TENOR=Os06t0139200-01;KEGG=Os06t0139200-01
Chr06	irgsp1_rep	five_prime_UTR	2072509	2072928	.	-	.	Parent=Os06t0139200-01
Chr06	irgsp1_rep	CDS	2072356	2072508	.	-	0	Parent=Os06t0139200-01
Chr06	irgsp1_rep	three_prime_UTR	2071507	2072355	.	-	.	Parent=Os06t0139200-01
Chr06	irgsp1_rep	mRNA	2070978	2072926	.	-	.	ID=Os06t0139200-02;Name=Os06t0139200-02;Locus_id=Os06g0139200;Note=Conserved hypothetical protein.;Transcript_evidence=AK063851 (DDBJ%2C Best hit);ORF_evidence=B9FJK4 (UniProt);NIAS_FLcDNA=001-122-C12;TENOR=Os06t0139200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	2072827	2072926	.	-	.	Parent=Os06t0139200-02
Chr06	irgsp1_rep	five_prime_UTR	2071219	2071306	.	-	.	Parent=Os06t0139200-02
Chr06	irgsp1_rep	CDS	2071129	2071218	.	-	0	Parent=Os06t0139200-02
Chr06	irgsp1_rep	three_prime_UTR	2070978	2071128	.	-	.	Parent=Os06t0139200-02
Chr06	irgsp1_rep	mRNA	2073625	2074799	.	-	.	ID=Os06t0139400-01;Name=Os06t0139400-01;Locus_id=Os06g0139400;Note=Conserved hypothetical protein.;Transcript_evidence=AK110768 (DDBJ%2C Best hit);ORF_evidence=Q5VQG5 (UniProt);NIAS_FLcDNA=002-171-A08;TENOR=Os06t0139400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	2074739	2074799	.	-	.	Parent=Os06t0139400-01
Chr06	irgsp1_rep	CDS	2074478	2074738	.	-	0	Parent=Os06t0139400-01
Chr06	irgsp1_rep	three_prime_UTR	2073625	2074477	.	-	.	Parent=Os06t0139400-01
Chr06	irgsp1_rep	mRNA	2084592	2087161	.	+	.	ID=Os06t0139700-01;Name=Os06t0139700-01;Locus_id=Os06g0139700;Note=Protein of unknown function DUF2052%2C coiled-coil domain containing protein.;Transcript_evidence=AK106220 (DDBJ%2C Best hit),AK067884 (DDBJ%2C Best hit),AK103245 (DDBJ%2C Best hit),AK106116 (DDBJ%2C Best hit);ORF_evidence=A2Y924 (UniProt);InterPro=Protein of unknown function DUF2052%2C coiled-coil (IPR018613);NIAS_FLcDNA=001-208-H07,J013123P20,J033123J23,001-207-E05;Expression=AK106220;TENOR=Os06t0139700-01;KEGG=Os06t0139700-01
Chr06	irgsp1_rep	five_prime_UTR	2084592	2084634	.	+	.	Parent=Os06t0139700-01
Chr06	irgsp1_rep	CDS	2084635	2085342	.	+	0	Parent=Os06t0139700-01
Chr06	irgsp1_rep	CDS	2086767	2086994	.	+	0	Parent=Os06t0139700-01
Chr06	irgsp1_rep	three_prime_UTR	2086995	2087161	.	+	.	Parent=Os06t0139700-01
Chr06	irgsp1_rep	mRNA	2088541	2090991	.	+	.	ID=Os06t0139800-01;Name=Os06t0139800-01;Locus_id=Os06g0139800;Note=Similar to Acid phosphatase (EC 3.1.3.2) 1 allozyme 1.;Transcript_evidence=AK058604 (DDBJ%2C Best hit);ORF_evidence=NP_001150931.1 (RefSeq);GO=Molecular Function: acid phosphatase activity (GO:0003993);InterPro=Acid phosphatase (Class B) (IPR005519),Acid phosphatase%2C plant (IPR010028),Vegetative storage protein/acid phosphatase (IPR014403),HAD-like domain (IPR023214);NIAS_FLcDNA=001-018-A01;Expression=AK058604;TENOR=Os06t0139800-01;KEGG=Os06t0139800-01 (EC:3.1.3.2)
Chr06	irgsp1_rep	five_prime_UTR	2088541	2088717	.	+	.	Parent=Os06t0139800-01
Chr06	irgsp1_rep	CDS	2088718	2089211	.	+	0	Parent=Os06t0139800-01
Chr06	irgsp1_rep	CDS	2089526	2089735	.	+	1	Parent=Os06t0139800-01
Chr06	irgsp1_rep	CDS	2090575	2090752	.	+	1	Parent=Os06t0139800-01
Chr06	irgsp1_rep	three_prime_UTR	2090753	2090991	.	+	.	Parent=Os06t0139800-01
Chr06	irgsp1_rep	mRNA	2091289	2094645	.	-	.	ID=Os06t0139900-01;Name=Os06t0139900-01;Locus_id=Os06g0139900;Note=Similar to Beta 1 subunit of 20S proteasome.;Transcript_evidence=AK104152 (DDBJ%2C Best hit);ORF_evidence=A2Y926 (UniProt);GO=Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603),Cellular Component: proteasome core complex (GO:0005839),Molecular Function: endopeptidase activity (GO:0004175),Molecular Function: threonine-type endopeptidase activity (GO:0004298);InterPro=Peptidase T1A%2C proteasome beta-subunit (IPR000243),Proteasome%2C subunit alpha/beta (IPR001353),Proteasome%2C beta-type subunit%2C conserved site (IPR016050),Proteasome B-type subunit (IPR023333);NIAS_FLcDNA=006-209-C07;Expression=AK104152;TENOR=Os06t0139900-01;KEGG=Os06t0139900-01 (EC:3.4.25.1)
Chr06	irgsp1_rep	five_prime_UTR	2094534	2094645	.	-	.	Parent=Os06t0139900-01
Chr06	irgsp1_rep	CDS	2094392	2094533	.	-	0	Parent=Os06t0139900-01
Chr06	irgsp1_rep	CDS	2093687	2093763	.	-	2	Parent=Os06t0139900-01
Chr06	irgsp1_rep	CDS	2093299	2093354	.	-	0	Parent=Os06t0139900-01
Chr06	irgsp1_rep	CDS	2093044	2093116	.	-	1	Parent=Os06t0139900-01
Chr06	irgsp1_rep	CDS	2092800	2092911	.	-	0	Parent=Os06t0139900-01
Chr06	irgsp1_rep	CDS	2092342	2092415	.	-	2	Parent=Os06t0139900-01
Chr06	irgsp1_rep	CDS	2092053	2092127	.	-	0	Parent=Os06t0139900-01
Chr06	irgsp1_rep	CDS	2091435	2091566	.	-	0	Parent=Os06t0139900-01
Chr06	irgsp1_rep	three_prime_UTR	2091289	2091434	.	-	.	Parent=Os06t0139900-01
Chr06	irgsp1_rep	mRNA	2100403	2105394	.	-	.	ID=Os06t0140100-01;Name=Os06t0140100-01;Locus_id=Os06g0140100;Note=Leucine carboxyl methyltransferase family protein.;Transcript_evidence=AK063371 (DDBJ%2C Best hit);ORF_evidence=A1YKF0 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Leucine carboxyl methyltransferase (IPR007213),Leucine carboxyl methyltransferase%2C LCTM1 1 (IPR016651),Leucine carboxyl methyltransferase%2C eukaryotic (IPR021121);NIAS_FLcDNA=001-114-E05;Expression=AK063371;TENOR=Os06t0140100-01;KEGG=Os06t0140100-01
Chr06	irgsp1_rep	five_prime_UTR	2105336	2105394	.	-	.	Parent=Os06t0140100-01
Chr06	irgsp1_rep	CDS	2105214	2105335	.	-	0	Parent=Os06t0140100-01
Chr06	irgsp1_rep	CDS	2104233	2104321	.	-	1	Parent=Os06t0140100-01
Chr06	irgsp1_rep	CDS	2104001	2104137	.	-	2	Parent=Os06t0140100-01
Chr06	irgsp1_rep	CDS	2103678	2103725	.	-	0	Parent=Os06t0140100-01
Chr06	irgsp1_rep	CDS	2103464	2103545	.	-	0	Parent=Os06t0140100-01
Chr06	irgsp1_rep	CDS	2102817	2102919	.	-	2	Parent=Os06t0140100-01
Chr06	irgsp1_rep	CDS	2102280	2102400	.	-	1	Parent=Os06t0140100-01
Chr06	irgsp1_rep	CDS	2102152	2102199	.	-	0	Parent=Os06t0140100-01
Chr06	irgsp1_rep	CDS	2101246	2101329	.	-	0	Parent=Os06t0140100-01
Chr06	irgsp1_rep	CDS	2101108	2101172	.	-	0	Parent=Os06t0140100-01
Chr06	irgsp1_rep	CDS	2100924	2100975	.	-	1	Parent=Os06t0140100-01
Chr06	irgsp1_rep	CDS	2100784	2100822	.	-	0	Parent=Os06t0140100-01
Chr06	irgsp1_rep	CDS	2100636	2100668	.	-	0	Parent=Os06t0140100-01
Chr06	irgsp1_rep	three_prime_UTR	2100403	2100635	.	-	.	Parent=Os06t0140100-01
Chr06	irgsp1_rep	mRNA	2106719	2111720	.	-	.	ID=Os06t0140200-01;Name=Os06t0140200-01;Locus_id=Os06g0140200;Note=Leucine-rich repeat%2C plant specific containing protein.;Transcript_evidence=AK287701 (DDBJ%2C Best hit),AK241776 (DDBJ%2C Best hit),AK287878 (DDBJ%2C Best hit);ORF_evidence=Q5VPE8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J065130L06,J065205O16,J065205O16;TENOR=Os06t0140200-01;KEGG=Os06t0140200-01
Chr06	irgsp1_rep	five_prime_UTR	2111567	2111720	.	-	.	Parent=Os06t0140200-01
Chr06	irgsp1_rep	five_prime_UTR	2110527	2110610	.	-	.	Parent=Os06t0140200-01
Chr06	irgsp1_rep	five_prime_UTR	2110064	2110401	.	-	.	Parent=Os06t0140200-01
Chr06	irgsp1_rep	CDS	2107121	2110063	.	-	0	Parent=Os06t0140200-01
Chr06	irgsp1_rep	three_prime_UTR	2106719	2107120	.	-	.	Parent=Os06t0140200-01
Chr06	irgsp1_rep	mRNA	2112539	2116561	.	-	.	ID=Os06t0140300-01;Name=Os06t0140300-01;Locus_id=Os06g0140300;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=AK100368 (DDBJ%2C Best hit);ORF_evidence=B8B2B4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J023084A02;Expression=AK100368;TENOR=Os06t0140300-01;KEGG=Os06t0140300-01
Chr06	irgsp1_rep	five_prime_UTR	2116280	2116561	.	-	.	Parent=Os06t0140300-01
Chr06	irgsp1_rep	five_prime_UTR	2115431	2115496	.	-	.	Parent=Os06t0140300-01
Chr06	irgsp1_rep	CDS	2112776	2115430	.	-	0	Parent=Os06t0140300-01
Chr06	irgsp1_rep	three_prime_UTR	2112539	2112775	.	-	.	Parent=Os06t0140300-01
Chr06	irgsp1_rep	mRNA	2123412	2124781	.	+	.	ID=Os06t0140400-01;Name=Os06t0140400-01;Locus_id=Os06g0140400;RAP-DB Gene Symbol Synonym(s)=OsHOX28;CGSNL Gene Symbol=HOX28;CGSNL Gene Name=HOMEOBOX GENE 28;Oryzabase Gene Symbol Synonym(s)=Oshox28%2C OsHox28;Oryzabase Gene Name Synonym(s)=rice homeobox gene 28%2C Homeobox-leucine zipper protein HOX28%2C Homeodomain transcription factor HOX28%2C HD-ZIP protein HOX28;Note=Class II homeodomain-leucine zipper (HD-ZIP II) protein%2C HD-ZIP transcription factor%2C Regulation of tiller angle and shoot gravitropism%2C Regulation of the local distribution of auxin;Transcript_evidence=AK102692;ORF_evidence=Q5VPE5;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox-like domain superfamily (IPR009057),Homeobox domain (IPR001356),Leucine zipper%2C homeobox-associated (IPR003106),Homeobox%2C conserved site (IPR017970);NIAS_FLcDNA=J033103D12;Manual Curation=September 11%2C 2020;Literature_PMID=32913047;Oryzabase=8465;Expression=AK102692;TENOR=Os06t0140400-01;KEGG=Os06t0140400-01
Chr06	irgsp1_rep	five_prime_UTR	2123412	2123669	.	+	.	Parent=Os06t0140400-01
Chr06	irgsp1_rep	CDS	2123670	2124023	.	+	0	Parent=Os06t0140400-01
Chr06	irgsp1_rep	CDS	2124136	2124552	.	+	0	Parent=Os06t0140400-01
Chr06	irgsp1_rep	three_prime_UTR	2124553	2124781	.	+	.	Parent=Os06t0140400-01
Chr06	irgsp1_rep	mRNA	2123595	2124781	.	+	.	ID=Os06t0140400-02;Name=Os06t0140400-02;Locus_id=Os06g0140400;CGSNL Gene Symbol=HOX28;CGSNL Gene Name=HOMEOBOX GENE 28;Oryzabase Gene Symbol Synonym(s)=Oshox28%2C OsHox28;Oryzabase Gene Name Synonym(s)=rice homeobox gene 28%2C Homeobox-leucine zipper protein HOX28%2C Homeodomain transcription factor HOX28%2C HD-ZIP protein HOX28;Note=Similar to HAHB-6 (Fragment).;Transcript_evidence=AK059116 (DDBJ%2C Best hit);ORF_evidence=Q5VPE5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),Leucine zipper%2C homeobox-associated (IPR003106),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Homeobox%2C conserved site (IPR017970);NIAS_FLcDNA=001-022-E09;Oryzabase=8465;Expression=AK059116;TENOR=Os06t0140400-02;KEGG=Os06t0140400-02
Chr06	irgsp1_rep	five_prime_UTR	2123595	2123669	.	+	.	Parent=Os06t0140400-02
Chr06	irgsp1_rep	CDS	2123670	2124023	.	+	0	Parent=Os06t0140400-02
Chr06	irgsp1_rep	CDS	2124136	2124552	.	+	0	Parent=Os06t0140400-02
Chr06	irgsp1_rep	three_prime_UTR	2124553	2124781	.	+	.	Parent=Os06t0140400-02
Chr06	irgsp1_rep	mRNA	2137590	2139091	.	+	.	ID=Os06t0140700-01;Name=Os06t0140700-01;Locus_id=Os06g0140700;CGSNL Gene Symbol=HOX2;CGSNL Gene Name=HOMEOBOX GENE 2;Oryzabase Gene Symbol Synonym(s)=Oshox2%2C OsHox2;Oryzabase Gene Name Synonym(s)=rice homeobox gene 2%2C Homeobox-leucine zipper protein HOX2 %3B Homeodomain transcription factor HOX2 %3B HD-ZIP protein HOX2;Note=Similar to Homeodomain leucine zipper protein (Fragment).;Transcript_evidence=AK105150 (DDBJ%2C Best hit);ORF_evidence=Q5VPE3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: transcription regulatory region sequence-specific DNA binding (GO:0000976),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Helix-turn-helix motif%2C lambda-like repressor (IPR000047),Homeobox (IPR001356),Leucine zipper%2C homeobox-associated (IPR003106),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Homeobox%2C conserved site (IPR017970);NIAS_FLcDNA=001-103-D07;Oryzabase=8456;Expression=AK105150;TENOR=Os06t0140700-01;KEGG=Os06t0140700-01
Chr06	irgsp1_rep	five_prime_UTR	2137590	2137641	.	+	.	Parent=Os06t0140700-01
Chr06	irgsp1_rep	CDS	2137642	2138058	.	+	0	Parent=Os06t0140700-01
Chr06	irgsp1_rep	CDS	2138170	2138679	.	+	0	Parent=Os06t0140700-01
Chr06	irgsp1_rep	three_prime_UTR	2138680	2139091	.	+	.	Parent=Os06t0140700-01
Chr06	irgsp1_rep	mRNA	2140055	2146616	.	-	.	ID=Os06t0140800-01;Name=Os06t0140800-01;Locus_id=Os06g0140800;CGSNL Gene Symbol=RLCK194;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 194;Oryzabase Gene Symbol Synonym(s)=OsPUB51%2C OsRLCK194;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 51%2C U-box protein 51%2C Receptor-like Cytoplasmic Kinase 194;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK065683 (DDBJ%2C Best hit);ORF_evidence=A1YKF2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: response to stress (GO:0006950),Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),U box domain (IPR003613),UspA (IPR006016),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013037K06;Oryzabase=17842;Expression=AK065683;TENOR=Os06t0140800-01;KEGG=Os06t0140800-01
Chr06	irgsp1_rep	five_prime_UTR	2146525	2146616	.	-	.	Parent=Os06t0140800-01
Chr06	irgsp1_rep	five_prime_UTR	2146090	2146137	.	-	.	Parent=Os06t0140800-01
Chr06	irgsp1_rep	CDS	2145885	2146089	.	-	0	Parent=Os06t0140800-01
Chr06	irgsp1_rep	CDS	2144884	2145005	.	-	2	Parent=Os06t0140800-01
Chr06	irgsp1_rep	CDS	2144676	2144794	.	-	0	Parent=Os06t0140800-01
Chr06	irgsp1_rep	CDS	2143358	2143554	.	-	1	Parent=Os06t0140800-01
Chr06	irgsp1_rep	CDS	2142565	2142884	.	-	2	Parent=Os06t0140800-01
Chr06	irgsp1_rep	CDS	2142350	2142451	.	-	0	Parent=Os06t0140800-01
Chr06	irgsp1_rep	CDS	2141838	2142257	.	-	0	Parent=Os06t0140800-01
Chr06	irgsp1_rep	CDS	2140724	2141479	.	-	0	Parent=Os06t0140800-01
Chr06	irgsp1_rep	CDS	2140429	2140608	.	-	0	Parent=Os06t0140800-01
Chr06	irgsp1_rep	three_prime_UTR	2140055	2140428	.	-	.	Parent=Os06t0140800-01
Chr06	irgsp1_rep	mRNA	2140306	2142183	.	-	.	ID=Os06t0140800-02;Name=Os06t0140800-02;Locus_id=Os06g0140800;CGSNL Gene Symbol=RLCK194;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 194;Oryzabase Gene Symbol Synonym(s)=OsPUB51%2C OsRLCK194;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 51%2C U-box protein 51%2C Receptor-like Cytoplasmic Kinase 194;Note=Similar to Serine threonine kinase.;Transcript_evidence=AK105657 (DDBJ%2C Best hit);ORF_evidence=A1YKF2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),U box domain (IPR003613),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-200-G08;Oryzabase=17842;Expression=AK105657;TENOR=Os06t0140800-02;KEGG=Os06t0140800-02
Chr06	irgsp1_rep	five_prime_UTR	2142183	2142183	.	-	.	Parent=Os06t0140800-02
Chr06	irgsp1_rep	CDS	2141838	2142182	.	-	0	Parent=Os06t0140800-02
Chr06	irgsp1_rep	CDS	2140724	2141479	.	-	0	Parent=Os06t0140800-02
Chr06	irgsp1_rep	CDS	2140429	2140608	.	-	0	Parent=Os06t0140800-02
Chr06	irgsp1_rep	three_prime_UTR	2140306	2140428	.	-	.	Parent=Os06t0140800-02
Chr06	irgsp1_rep	mRNA	2151949	2152584	.	-	.	ID=Os06t0140900-01;Name=Os06t0140900-01;Locus_id=Os06g0140900;Note=Sigma factor%2C regions 3 and 4 domain containing protein.;Transcript_evidence=AK058823 (DDBJ%2C Best hit);ORF_evidence=B8B2B8 (UniProt);NIAS_FLcDNA=001-003-G12;Expression=AK058823;TENOR=Os06t0140900-01;KEGG=Os06t0140900-01
Chr06	irgsp1_rep	five_prime_UTR	2152408	2152584	.	-	.	Parent=Os06t0140900-01
Chr06	irgsp1_rep	CDS	2152201	2152407	.	-	0	Parent=Os06t0140900-01
Chr06	irgsp1_rep	three_prime_UTR	2151949	2152200	.	-	.	Parent=Os06t0140900-01
Chr06	irgsp1_rep	mRNA	2152827	2154164	.	+	.	ID=Os06t0140950-01;Name=Os06t0140950-01;Locus_id=Os06g0140950;Note=Non-protein coding transcript.;Transcript_evidence=AK242656 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090026P04;TENOR=Os06t0140950-01
Chr06	irgsp1_rep	exon	2152827	2154164	.	+	.	Parent=Os06t0140950-01
Chr06	irgsp1_rep	mRNA	2155077	2156716	.	-	.	ID=Os06t0141100-00;Name=Os06t0141100-00;Locus_id=Os06g0141100;Note=Monosaccharide transporter.;Transcript_evidence=ab initio prediction;ORF_evidence=C0JSA7 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);TENOR=Os06t0141100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	2156569	2156716	.	-	0	Parent=Os06t0141100-00
Chr06	irgsp1_rep	CDS	2155077	2156491	.	-	2	Parent=Os06t0141100-00
Chr06	irgsp1_rep	mRNA	2155115	2156513	.	+	.	ID=Os06t0141133-00;Name=Os06t0141133-00;Locus_id=Os06g0141133;Note=Hypothetical protein.;Transcript_evidence=tplb0053a05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0141133-00
Chr06	irgsp1_rep	five_prime_UTR	2155115	2155115	.	+	.	Parent=Os06t0141133-00
Chr06	irgsp1_rep	CDS	2155116	2156513	.	+	0	Parent=Os06t0141133-00
Chr06	irgsp1_rep	mRNA	2157903	2160576	.	-	.	ID=Os06t0141166-00;Name=Os06t0141166-00;Locus_id=Os06g0141166;Note=Similar to hydrolase%2C NUDIX family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001149422.1 (RefSeq);GO=Molecular Function: hydrolase activity (GO:0016787),Molecular Function: metal ion binding (GO:0046872);InterPro=NUDIX hydrolase domain (IPR000086),NADH pyrophosphatase-like%2C N-terminal (IPR015375),Zinc ribbon%2C NADH pyrophosphatase (IPR015376),NUDIX hydrolase domain-like (IPR015797),NUDIX hydrolase%2C conserved site (IPR020084),NUDIX hydrolase (IPR020476);TENOR=Os06t0141166-00
Chr06	irgsp1_rep	CDS	2160064	2160576	.	-	0	Parent=Os06t0141166-00
Chr06	irgsp1_rep	CDS	2159840	2159980	.	-	0	Parent=Os06t0141166-00
Chr06	irgsp1_rep	CDS	2159642	2159746	.	-	0	Parent=Os06t0141166-00
Chr06	irgsp1_rep	CDS	2158940	2159039	.	-	0	Parent=Os06t0141166-00
Chr06	irgsp1_rep	CDS	2158443	2158535	.	-	2	Parent=Os06t0141166-00
Chr06	irgsp1_rep	CDS	2157903	2158168	.	-	2	Parent=Os06t0141166-00
Chr06	irgsp1_rep	mRNA	2162738	2165150	.	-	.	ID=Os06t0141200-01;Name=Os06t0141200-01;Locus_id=Os06g0141200;Oryzabase Gene Symbol Synonym(s)=OsZFP1%2C SRZ3;Oryzabase Gene Name Synonym(s)=zinc finger protein 1%2C stress repressive zinc finger protein 3;Note=Similar to RNA-binding protein EWS.;Transcript_evidence=AK061234 (DDBJ%2C Best hit),AK099058 (DDBJ%2C Best hit);ORF_evidence=Q9SW92 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RanBP2-type (IPR001876);NIAS_FLcDNA=006-211-B04,J013154B21;Oryzabase=14388;TENOR=Os06t0141200-01
Chr06	irgsp1_rep	five_prime_UTR	2165048	2165150	.	-	.	Parent=Os06t0141200-01
Chr06	irgsp1_rep	five_prime_UTR	2164323	2164335	.	-	.	Parent=Os06t0141200-01
Chr06	irgsp1_rep	CDS	2163970	2164322	.	-	0	Parent=Os06t0141200-01
Chr06	irgsp1_rep	CDS	2163726	2163796	.	-	1	Parent=Os06t0141200-01
Chr06	irgsp1_rep	CDS	2163074	2163087	.	-	2	Parent=Os06t0141200-01
Chr06	irgsp1_rep	three_prime_UTR	2162738	2163073	.	-	.	Parent=Os06t0141200-01
Chr06	irgsp1_rep	mRNA	2170963	2173400	.	-	.	ID=Os06t0141400-01;Name=Os06t0141400-01;Locus_id=Os06g0141400;Note=Similar to Early nodulin.;Transcript_evidence=AK121184 (DDBJ%2C Best hit);ORF_evidence=Q9XFD2 (UniProt);InterPro=Early nodulin 93 ENOD93 protein (IPR005050);NIAS_FLcDNA=J023084M13;Expression=AK121184;TENOR=Os06t0141400-01;KEGG=Os06t0141400-01
Chr06	irgsp1_rep	five_prime_UTR	2173238	2173400	.	-	.	Parent=Os06t0141400-01
Chr06	irgsp1_rep	CDS	2173141	2173237	.	-	0	Parent=Os06t0141400-01
Chr06	irgsp1_rep	CDS	2171661	2171722	.	-	2	Parent=Os06t0141400-01
Chr06	irgsp1_rep	CDS	2171409	2171487	.	-	0	Parent=Os06t0141400-01
Chr06	irgsp1_rep	CDS	2171168	2171289	.	-	2	Parent=Os06t0141400-01
Chr06	irgsp1_rep	three_prime_UTR	2170963	2171167	.	-	.	Parent=Os06t0141400-01
Chr06	irgsp1_rep	mRNA	2175908	2176926	.	-	.	ID=Os06t0141600-01;Name=Os06t0141600-01;Locus_id=Os06g0141600;Oryzabase Gene Symbol Synonym(s)=OsENOD93;Oryzabase Gene Name Synonym(s)=early nodulin 93 gene;Note=Early nodulin 93 ENOD93 protein family protein.;Transcript_evidence=AK059772 (DDBJ%2C Best hit);ORF_evidence=O82787 (UniProt);InterPro=Early nodulin 93 ENOD93 protein (IPR005050);NIAS_FLcDNA=006-203-H12;Oryzabase=18476;Expression=AK059772;TENOR=Os06t0141600-01;KEGG=Os06t0141600-01
Chr06	irgsp1_rep	five_prime_UTR	2176623	2176926	.	-	.	Parent=Os06t0141600-01
Chr06	irgsp1_rep	CDS	2176203	2176622	.	-	0	Parent=Os06t0141600-01
Chr06	irgsp1_rep	three_prime_UTR	2175908	2176202	.	-	.	Parent=Os06t0141600-01
Chr06	irgsp1_rep	mRNA	2180250	2181114	.	-	.	ID=Os06t0141700-01;Name=Os06t0141700-01;Locus_id=Os06g0141700;Oryzabase Gene Symbol Synonym(s)=OsENOD93;Oryzabase Gene Name Synonym(s)=early nodulin 93 gene;Note=Similar to Early nodulin.;Transcript_evidence=AK121791 (DDBJ%2C Best hit);ORF_evidence=O82787 (UniProt);InterPro=Early nodulin 93 ENOD93 protein (IPR005050);NIAS_FLcDNA=J033095D10;Oryzabase=18474;Expression=AK121791;TENOR=Os06t0141700-01;KEGG=Os06t0141700-01
Chr06	irgsp1_rep	five_prime_UTR	2180979	2181114	.	-	.	Parent=Os06t0141700-01
Chr06	irgsp1_rep	CDS	2180915	2180978	.	-	0	Parent=Os06t0141700-01
Chr06	irgsp1_rep	CDS	2180744	2180805	.	-	2	Parent=Os06t0141700-01
Chr06	irgsp1_rep	CDS	2180421	2180642	.	-	0	Parent=Os06t0141700-01
Chr06	irgsp1_rep	three_prime_UTR	2180250	2180420	.	-	.	Parent=Os06t0141700-01
Chr06	irgsp1_rep	mRNA	2184690	2185994	.	+	.	ID=Os06t0141800-01;Name=Os06t0141800-01;Locus_id=Os06g0141800;Note=Similar to fasciclin-like arabinogalactan protein 8.;Transcript_evidence=AK107277 (DDBJ%2C Best hit);ORF_evidence=NP_001150349.1 (RefSeq);NIAS_FLcDNA=002-126-A07;Expression=AK107277;TENOR=Os06t0141800-01;KEGG=Os06t0141800-01
Chr06	irgsp1_rep	five_prime_UTR	2184690	2185292	.	+	.	Parent=Os06t0141800-01
Chr06	irgsp1_rep	CDS	2185293	2185655	.	+	0	Parent=Os06t0141800-01
Chr06	irgsp1_rep	three_prime_UTR	2185656	2185994	.	+	.	Parent=Os06t0141800-01
Chr06	irgsp1_rep	mRNA	2187658	2187867	.	-	.	ID=Os06t0141950-00;Name=Os06t0141950-00;Locus_id=Os06g0141950;Note=Similar to MYB transcription factor.;Transcript_evidence=AJ601380 (DDBJ);ORF_evidence=B4FX89 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);TENOR=Os06t0141950-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	2187658	2187867	.	-	0	Parent=Os06t0141950-00
Chr06	irgsp1_rep	mRNA	2188410	2191519	.	+	.	ID=Os06t0142000-00;Name=Os06t0142000-00;Locus_id=Os06g0142000;Oryzabase Gene Symbol Synonym(s)=OsTP1%2C TP1;Oryzabase Gene Name Synonym(s)=trypsin-like peptidase 1;Note=Hypothetical conserved gene.;Transcript_evidence=CT836263 (DDBJ%2C Best hit);ORF_evidence=NP_001056764.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Peptidase cysteine/serine%2C trypsin-like (IPR009003);Oryzabase=22326;TENOR=Os06t0142000-00;KEGG=Os06t0142000-00
Chr06	irgsp1_rep	five_prime_UTR	2188410	2188505	.	+	.	Parent=Os06t0142000-00
Chr06	irgsp1_rep	five_prime_UTR	2189902	2189912	.	+	.	Parent=Os06t0142000-00
Chr06	irgsp1_rep	CDS	2189913	2189997	.	+	0	Parent=Os06t0142000-00
Chr06	irgsp1_rep	CDS	2190096	2190197	.	+	2	Parent=Os06t0142000-00
Chr06	irgsp1_rep	CDS	2190290	2190414	.	+	2	Parent=Os06t0142000-00
Chr06	irgsp1_rep	CDS	2190495	2190761	.	+	0	Parent=Os06t0142000-00
Chr06	irgsp1_rep	CDS	2190914	2191066	.	+	0	Parent=Os06t0142000-00
Chr06	irgsp1_rep	three_prime_UTR	2191067	2191086	.	+	.	Parent=Os06t0142000-00
Chr06	irgsp1_rep	three_prime_UTR	2191238	2191519	.	+	.	Parent=Os06t0142000-00
Chr06	irgsp1_rep	mRNA	2193618	2194782	.	+	.	ID=Os06t0142050-00;Name=Os06t0142050-00;Locus_id=Os06g0142050;Note=Similar to H0913C04.9 protein.;Transcript_evidence=BT035075 (DDBJ);ORF_evidence=NP_565878.1 (RefSeq);GO=Biological Process: ribosome biogenesis (GO:0042254),Cellular Component: nucleus (GO:0005634);InterPro=Ribosomal biogenesis regulatory protein (IPR007023);TENOR=Os06t0142050-00;KEGG=Os06t0142050-00
Chr06	irgsp1_rep	CDS	2193618	2193754	.	+	0	Parent=Os06t0142050-00
Chr06	irgsp1_rep	CDS	2193881	2194064	.	+	1	Parent=Os06t0142050-00
Chr06	irgsp1_rep	CDS	2194152	2194266	.	+	0	Parent=Os06t0142050-00
Chr06	irgsp1_rep	CDS	2194375	2194445	.	+	2	Parent=Os06t0142050-00
Chr06	irgsp1_rep	three_prime_UTR	2194446	2194782	.	+	.	Parent=Os06t0142050-00
Chr06	irgsp1_rep	mRNA	2195353	2198373	.	+	.	ID=Os06t0142100-00;Name=Os06t0142100-00;Locus_id=Os06g0142100;Oryzabase Gene Symbol Synonym(s)=OsFbox291%2C Os_F0516;Oryzabase Gene Name Synonym(s)=F-box protein 291;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001056765.1 (RefSeq);Oryzabase=17071;TENOR=Os06t0142100-00;KEGG=Os06t0142100-00
Chr06	irgsp1_rep	CDS	2195353	2195422	.	+	0	Parent=Os06t0142100-00
Chr06	irgsp1_rep	CDS	2196236	2196336	.	+	2	Parent=Os06t0142100-00
Chr06	irgsp1_rep	CDS	2196826	2197665	.	+	0	Parent=Os06t0142100-00
Chr06	irgsp1_rep	CDS	2197751	2197897	.	+	0	Parent=Os06t0142100-00
Chr06	irgsp1_rep	CDS	2197993	2198373	.	+	0	Parent=Os06t0142100-00
Chr06	irgsp1_rep	mRNA	2199377	2200466	.	-	.	ID=Os06t0142200-01;Name=Os06t0142200-01;Locus_id=Os06g0142200;CGSNL Gene Symbol=ENOD93A;CGSNL Gene Name=EARLY NODULIN 93A;Oryzabase Gene Symbol Synonym(s)=OsENOD93a;Oryzabase Gene Name Synonym(s)=early nodulin 93A;Note=Early nodulin.;Transcript_evidence=AK122162 (DDBJ%2C Best hit);ORF_evidence=B6SIM1 (UniProt);InterPro=Early nodulin 93 ENOD93 protein (IPR005050);NIAS_FLcDNA=J033147G13;Oryzabase=14480;Expression=AK122162;TENOR=Os06t0142200-01;KEGG=Os06t0142200-01
Chr06	irgsp1_rep	five_prime_UTR	2200303	2200466	.	-	.	Parent=Os06t0142200-01
Chr06	irgsp1_rep	CDS	2200239	2200302	.	-	0	Parent=Os06t0142200-01
Chr06	irgsp1_rep	CDS	2200054	2200115	.	-	2	Parent=Os06t0142200-01
Chr06	irgsp1_rep	CDS	2199658	2199879	.	-	0	Parent=Os06t0142200-01
Chr06	irgsp1_rep	three_prime_UTR	2199377	2199657	.	-	.	Parent=Os06t0142200-01
Chr06	irgsp1_rep	mRNA	2199361	2199886	.	-	.	ID=Os06t0142200-02;Name=Os06t0142200-02;Locus_id=Os06g0142200;CGSNL Gene Symbol=ENOD93A;CGSNL Gene Name=EARLY NODULIN 93A;Oryzabase Gene Symbol Synonym(s)=OsENOD93a;Oryzabase Gene Name Synonym(s)=early nodulin 93A;Note=Similar to cDNA clone:J033147G13%2C full insert sequence.;Transcript_evidence=AK105832 (DDBJ%2C Best hit);ORF_evidence=B6UHN2 (UniProt);InterPro=Early nodulin 93 ENOD93 protein (IPR005050);NIAS_FLcDNA=001-203-E08;Oryzabase=14480;Expression=AK105832;TENOR=Os06t0142200-02;KEGG=Os06t0142200-02
Chr06	irgsp1_rep	five_prime_UTR	2199886	2199886	.	-	.	Parent=Os06t0142200-02
Chr06	irgsp1_rep	CDS	2199658	2199885	.	-	0	Parent=Os06t0142200-02
Chr06	irgsp1_rep	three_prime_UTR	2199361	2199657	.	-	.	Parent=Os06t0142200-02
Chr06	irgsp1_rep	mRNA	2205750	2206509	.	-	.	ID=Os06t0142300-00;Name=Os06t0142300-00;Locus_id=Os06g0142300;Oryzabase Gene Symbol Synonym(s)=OsENOD93;Oryzabase Gene Name Synonym(s)=early nodulin 93 gene;Note=Early nodulin 93 ENOD93 protein family protein.;Transcript_evidence=CT837557 (DDBJ%2C Best hit);ORF_evidence=O82787 (UniProt);InterPro=Early nodulin 93 ENOD93 protein (IPR005050);Oryzabase=18475;TENOR=Os06t0142300-00;KEGG=Os06t0142300-00
Chr06	irgsp1_rep	five_prime_UTR	2206397	2206509	.	-	.	Parent=Os06t0142300-00
Chr06	irgsp1_rep	CDS	2206333	2206396	.	-	0	Parent=Os06t0142300-00
Chr06	irgsp1_rep	CDS	2206185	2206246	.	-	2	Parent=Os06t0142300-00
Chr06	irgsp1_rep	CDS	2205869	2206090	.	-	0	Parent=Os06t0142300-00
Chr06	irgsp1_rep	three_prime_UTR	2205750	2205868	.	-	.	Parent=Os06t0142300-00
Chr06	irgsp1_rep	mRNA	2208762	2209556	.	-	.	ID=Os06t0142350-01;Name=Os06t0142350-01;Locus_id=Os06g0142350;Oryzabase Gene Symbol Synonym(s)=UDP-GT%2C OsENOD93-1;Oryzabase Gene Name Synonym(s)=UDP-glucuronyl transferase%2C early nodulin 93 gene 1;Note=Similar to Early nodulin.;Transcript_evidence=AK242220 (DDBJ%2C Best hit);ORF_evidence=O82787 (UniProt);InterPro=Early nodulin 93 ENOD93 protein (IPR005050);NIAS_FLcDNA=J075173F22;Oryzabase=16798;TENOR=Os06t0142350-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	2209289	2209556	.	-	.	Parent=Os06t0142350-01
Chr06	irgsp1_rep	CDS	2209208	2209288	.	-	0	Parent=Os06t0142350-01
Chr06	irgsp1_rep	CDS	2208872	2209093	.	-	0	Parent=Os06t0142350-01
Chr06	irgsp1_rep	three_prime_UTR	2208762	2208871	.	-	.	Parent=Os06t0142350-01
Chr06	irgsp1_rep	mRNA	2212615	2213482	.	-	.	ID=Os06t0142400-01;Name=Os06t0142400-01;Locus_id=Os06g0142400;Oryzabase Gene Symbol Synonym(s)=OsENOD93%2C ENOD93;Oryzabase Gene Name Synonym(s)=early nodulin 93 gene;Note=Early nodulin.;Transcript_evidence=AK241230 (DDBJ%2C Best hit);ORF_evidence=O82787 (UniProt);InterPro=Early nodulin 93 ENOD93 protein (IPR005050);NIAS_FLcDNA=J065127G01;Oryzabase=18473;TENOR=Os06t0142400-01;KEGG=Os06t0142400-01
Chr06	irgsp1_rep	five_prime_UTR	2213371	2213482	.	-	.	Parent=Os06t0142400-01
Chr06	irgsp1_rep	CDS	2213307	2213370	.	-	0	Parent=Os06t0142400-01
Chr06	irgsp1_rep	CDS	2213140	2213201	.	-	2	Parent=Os06t0142400-01
Chr06	irgsp1_rep	CDS	2212791	2213012	.	-	0	Parent=Os06t0142400-01
Chr06	irgsp1_rep	three_prime_UTR	2212615	2212790	.	-	.	Parent=Os06t0142400-01
Chr06	irgsp1_rep	mRNA	2230033	2233000	.	+	.	ID=Os06t0142500-00;Name=Os06t0142500-00;Locus_id=Os06g0142500;CGSNL Gene Symbol=RLCK195;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 195;Oryzabase Gene Symbol Synonym(s)=OsRLCK195;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 195;Note=Similar to Wall-associated kinase 3.;Transcript_evidence=AK252642 (DDBJ);ORF_evidence=Q4U3Z6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=EGF-type aspartate/asparagine hydroxylation site (IPR000152),Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),EGF-like calcium-binding (IPR001881),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Epidermal growth factor-like (IPR006210),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),EGF-like calcium-binding%2C conserved site (IPR018097),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18893;TENOR=Os06t0142500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	2230033	2230268	.	+	0	Parent=Os06t0142500-00
Chr06	irgsp1_rep	CDS	2230456	2231153	.	+	1	Parent=Os06t0142500-00
Chr06	irgsp1_rep	CDS	2231400	2231552	.	+	2	Parent=Os06t0142500-00
Chr06	irgsp1_rep	CDS	2231790	2233000	.	+	2	Parent=Os06t0142500-00
Chr06	irgsp1_rep	mRNA	2231653	2233724	.	-	.	ID=Os06t0142550-00;Name=Os06t0142550-00;Locus_id=Os06g0142550;Note=Non-protein coding transcript.;Transcript_evidence=CT828398 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os06t0142550-00
Chr06	irgsp1_rep	exon	2233576	2233724	.	-	.	Parent=Os06t0142550-00
Chr06	irgsp1_rep	exon	2231653	2231893	.	-	.	Parent=Os06t0142550-00
Chr06	irgsp1_rep	mRNA	2234581	2239058	.	-	.	ID=Os06t0142600-01;Name=Os06t0142600-01;Locus_id=Os06g0142600;RAP-DB Gene Symbol Synonym(s)=HD3B%2C Hd17%2C EF7%2C Ef7%2C OsELF3-1%2C OsELF3%2C ELF3_Chr.6;RAP-DB Gene Name Synonym(s)=HEADING DATE 3B%2C HEADING DATE 17%2C EARLINESS 7%2C EARLY FLOWERING 3-1;CGSNL Gene Symbol=HD3B;CGSNL Gene Name=HEADING DATE 3B;Oryzabase Gene Symbol Synonym(s)=Hd17%2C EF7%2C Ef7%2C OsELF3-1%2C OsELF3%2C ELF3%2C ELF3_Chr.6%2C OsELF3.1%2C ELF3.1;Oryzabase Gene Name Synonym(s)=HEADING DATE 17%2C EARLINESS 7%2C EARLY FLOWERING 3-1%2C EARLY FLOWERING3.1%2C EARLY FLOWERING 3.1%2C ELF3 homolog 1%2C Heading date from Qingluzhan 11%2C EARLY FLOWERING3;Note=Homolog of the Arabidopsis EARLY FLOWERING 3 protein%2C Photoperiodic flowering%2C Short-day/long-day promotion;Transcript_evidence=AB683966;ORF_evidence=Q9SNQ6;Manual Curation=October 2%2C 2014;Literature_PMID=22399582;Oryzabase=8705;TENOR=Os06t0142600-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	2238798	2239058	.	-	0	Parent=Os06t0142600-01
Chr06	irgsp1_rep	CDS	2236414	2237399	.	-	0	Parent=Os06t0142600-01
Chr06	irgsp1_rep	CDS	2235678	2235729	.	-	1	Parent=Os06t0142600-01
Chr06	irgsp1_rep	CDS	2234581	2235564	.	-	0	Parent=Os06t0142600-01
Chr06	irgsp1_rep	mRNA	2241746	2243175	.	+	.	ID=Os06t0142625-00;Name=Os06t0142625-00;Locus_id=Os06g0142625;Note=Hypothetical protein.;Transcript_evidence=BT039571 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0142625-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	2241746	2242457	.	+	.	Parent=Os06t0142625-00
Chr06	irgsp1_rep	CDS	2242458	2243153	.	+	0	Parent=Os06t0142625-00
Chr06	irgsp1_rep	three_prime_UTR	2243154	2243175	.	+	.	Parent=Os06t0142625-00
Chr06	irgsp1_rep	mRNA	2241753	2243138	.	-	.	ID=Os06t0142650-00;Name=Os06t0142650-00;Locus_id=Os06g0142650;Note=Similar to Avr9/Cf-9 rapidly elicited protein 11 (Fragment).;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001174594.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os06t0142650-00;KEGG=Os06t0142650-00 (EC:2.7.11.1)
Chr06	irgsp1_rep	CDS	2241753	2243138	.	-	0	Parent=Os06t0142650-00
Chr06	irgsp1_rep	mRNA	2243776	2246692	.	-	.	ID=Os06t0142700-01;Name=Os06t0142700-01;Locus_id=Os06g0142700;Note=CytoChrome c oxidase%2C subunit Vb family protein.;Transcript_evidence=AK071423 (DDBJ%2C Best hit);ORF_evidence=P92683 (UniProt);GO=Cellular Component: mitochondrial envelope (GO:0005740),Molecular Function: cytoChrome-c oxidase activity (GO:0004129);InterPro=CytoChrome c oxidase%2C subunit Vb (IPR002124);NIAS_FLcDNA=J023098B10;Expression=AK071423;TENOR=Os06t0142700-01;KEGG=Os06t0142700-01 (EC:1.9.3.1)
Chr06	irgsp1_rep	five_prime_UTR	2246621	2246692	.	-	.	Parent=Os06t0142700-01
Chr06	irgsp1_rep	CDS	2246509	2246620	.	-	0	Parent=Os06t0142700-01
Chr06	irgsp1_rep	CDS	2246325	2246410	.	-	2	Parent=Os06t0142700-01
Chr06	irgsp1_rep	CDS	2246184	2246234	.	-	0	Parent=Os06t0142700-01
Chr06	irgsp1_rep	CDS	2244562	2244628	.	-	0	Parent=Os06t0142700-01
Chr06	irgsp1_rep	CDS	2244329	2244408	.	-	2	Parent=Os06t0142700-01
Chr06	irgsp1_rep	CDS	2244125	2244193	.	-	0	Parent=Os06t0142700-01
Chr06	irgsp1_rep	three_prime_UTR	2243776	2244124	.	-	.	Parent=Os06t0142700-01
Chr06	irgsp1_rep	mRNA	2247873	2250815	.	+	.	ID=Os06t0142800-01;Name=Os06t0142800-01;Locus_id=Os06g0142800;RAP-DB Gene Symbol Synonym(s)=OsPRMT10;RAP-DB Gene Name Synonym(s)=protein arginine methyltransferase 10;CGSNL Gene Symbol=PRMT10;CGSNL Gene Name=PROTEIN ARGININE METHYLTRANSFERASE 10;Oryzabase Gene Symbol Synonym(s)=OsPRMT710;Oryzabase Gene Name Synonym(s)=protein arginine methyltransferase 10;Note=Type I protein arginine methyltransferase;Transcript_evidence=AK073269,AK103971;ORF_evidence=Q9SNQ2;GO=Biological Process: protein methylation (GO:0006479),Molecular Function: methyltransferase activity (GO:0008168);InterPro=S-adenosyl-L-methionine-dependent methyltransferase (IPR029063),Protein arginine N-methyltransferase (IPR025799);NIAS_FLcDNA=J033028C20,001-016-C05;Manual Curation=September 2%2C 2020;Literature_PMID=21853042;Oryzabase=9679;Expression=AK073269;TENOR=Os06t0142800-01;KEGG=Os06t0142800-01;Subcellular location=nucleus (GO:0005634),cytoplasm (GO:0005737)
Chr06	irgsp1_rep	five_prime_UTR	2247873	2247906	.	+	.	Parent=Os06t0142800-01
Chr06	irgsp1_rep	CDS	2247907	2248113	.	+	0	Parent=Os06t0142800-01
Chr06	irgsp1_rep	CDS	2248190	2248382	.	+	0	Parent=Os06t0142800-01
Chr06	irgsp1_rep	CDS	2248615	2248720	.	+	2	Parent=Os06t0142800-01
Chr06	irgsp1_rep	CDS	2248966	2249155	.	+	1	Parent=Os06t0142800-01
Chr06	irgsp1_rep	CDS	2249480	2249665	.	+	0	Parent=Os06t0142800-01
Chr06	irgsp1_rep	CDS	2249747	2249830	.	+	0	Parent=Os06t0142800-01
Chr06	irgsp1_rep	CDS	2250215	2250391	.	+	0	Parent=Os06t0142800-01
Chr06	irgsp1_rep	three_prime_UTR	2250392	2250397	.	+	.	Parent=Os06t0142800-01
Chr06	irgsp1_rep	three_prime_UTR	2250596	2250815	.	+	.	Parent=Os06t0142800-01
Chr06	irgsp1_rep	mRNA	2251031	2256626	.	-	.	ID=Os06t0142900-01;Name=Os06t0142900-01;Locus_id=Os06g0142900;CGSNL Gene Symbol=DXS2;CGSNL Gene Name=1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2;Oryzabase Gene Symbol Synonym(s)=OsDXS2%2C dxs2;Oryzabase Gene Name Synonym(s)=1-Deoxy-D-xylulose 5-phosphate synthase 2%2C Deoxyxylulose 5-phosphate synthase 2;Note=Similar to 1-deoxy-D-xylulose 5-phosphate synthase.;Transcript_evidence=AK121920 (DDBJ%2C Best hit);ORF_evidence=F2WM28 (UniProt);NIAS_FLcDNA=J033106D18;Oryzabase=20540;TENOR=Os06t0142900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	2256449	2256626	.	-	.	Parent=Os06t0142900-01
Chr06	irgsp1_rep	five_prime_UTR	2256077	2256103	.	-	.	Parent=Os06t0142900-01
Chr06	irgsp1_rep	CDS	2255912	2256076	.	-	0	Parent=Os06t0142900-01
Chr06	irgsp1_rep	CDS	2255556	2255675	.	-	0	Parent=Os06t0142900-01
Chr06	irgsp1_rep	CDS	2255444	2255470	.	-	0	Parent=Os06t0142900-01
Chr06	irgsp1_rep	three_prime_UTR	2255302	2255443	.	-	.	Parent=Os06t0142900-01
Chr06	irgsp1_rep	three_prime_UTR	2255030	2255180	.	-	.	Parent=Os06t0142900-01
Chr06	irgsp1_rep	three_prime_UTR	2254217	2254485	.	-	.	Parent=Os06t0142900-01
Chr06	irgsp1_rep	three_prime_UTR	2253589	2253868	.	-	.	Parent=Os06t0142900-01
Chr06	irgsp1_rep	three_prime_UTR	2252825	2253129	.	-	.	Parent=Os06t0142900-01
Chr06	irgsp1_rep	three_prime_UTR	2252297	2252575	.	-	.	Parent=Os06t0142900-01
Chr06	irgsp1_rep	three_prime_UTR	2251031	2252084	.	-	.	Parent=Os06t0142900-01
Chr06	irgsp1_rep	mRNA	2251031	2252534	.	-	.	ID=Os06t0142900-02;Name=Os06t0142900-02;Locus_id=Os06g0142900;CGSNL Gene Symbol=DXS2;CGSNL Gene Name=1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2;Oryzabase Gene Symbol Synonym(s)=OsDXS2%2C dxs2;Oryzabase Gene Name Synonym(s)=1-Deoxy-D-xylulose 5-phosphate synthase 2%2C Deoxyxylulose 5-phosphate synthase 2;Note=Similar to predicted protein.;Transcript_evidence=AK061829 (DDBJ%2C Best hit);ORF_evidence=F2WM28 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Transketolase-like%2C pyrimidine-binding domain (IPR005475),Transketolase%2C C-terminal (IPR005476),Transketolase%2C C-terminal/Pyruvate-ferredoxin oxidoreductase%2C domain II (IPR009014),Transketolase-like%2C C-terminal (IPR015941);NIAS_FLcDNA=001-040-C12;Oryzabase=20540;Expression=AK061829;TENOR=Os06t0142900-02;KEGG=Os06t0142900-02 (EC:2.2.1.7)
Chr06	irgsp1_rep	five_prime_UTR	2252534	2252534	.	-	.	Parent=Os06t0142900-02
Chr06	irgsp1_rep	CDS	2252297	2252533	.	-	0	Parent=Os06t0142900-02
Chr06	irgsp1_rep	CDS	2251800	2252084	.	-	0	Parent=Os06t0142900-02
Chr06	irgsp1_rep	CDS	2251469	2251618	.	-	0	Parent=Os06t0142900-02
Chr06	irgsp1_rep	three_prime_UTR	2251031	2251468	.	-	.	Parent=Os06t0142900-02
Chr06	irgsp1_rep	mRNA	2250559	2256639	.	-	.	ID=Os06t0142900-03;Name=Os06t0142900-03;Locus_id=Os06g0142900;RAP-DB Gene Symbol Synonym(s)=OsDXS2;RAP-DB Gene Name Synonym(s)=1-Deoxy-D-xylulose 5-phosphate synthase 2%2C deoxyxylulose 5-phosphate synthase 2;CGSNL Gene Symbol=DXS2;CGSNL Gene Name=1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2;Oryzabase Gene Symbol Synonym(s)=OsDXS2%2C dxs2;Oryzabase Gene Name Synonym(s)=1-Deoxy-D-xylulose 5-phosphate synthase 2%2C Deoxyxylulose 5-phosphate synthase 2;Note=Deoxyxylulose 5-phosphate synthase%2C Rate-limiting enzyme%2C Carotenoid metabolism in seed;Transcript_evidence=Inferred from literature;ORF_evidence=XP_015642490;GO=Biological Process: terpenoid biosynthetic process (GO:0016114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: 1-deoxy-D-xylulose-5-phosphate synthase activity (GO:0008661);InterPro=Thiamin diphosphate-binding fold (IPR029061),Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II (IPR009014),Deoxyxylulose-5-phosphate synthase (IPR005477),Transketolase-like%2C pyrimidine-binding domain (IPR005475),Transketolase%2C C-terminal domain (IPR033248);Manual Curation=April 20%2C 2020;Literature_PMID=32293285;Oryzabase=20540
Chr06	irgsp1_rep	five_prime_UTR	2256449	2256639	.	-	.	Parent=Os06t0142900-03
Chr06	irgsp1_rep	five_prime_UTR	2256077	2256103	.	-	.	Parent=Os06t0142900-03
Chr06	irgsp1_rep	CDS	2255912	2256076	.	-	0	Parent=Os06t0142900-03
Chr06	irgsp1_rep	CDS	2255556	2255675	.	-	0	Parent=Os06t0142900-03
Chr06	irgsp1_rep	CDS	2255302	2255466	.	-	0	Parent=Os06t0142900-03
Chr06	irgsp1_rep	CDS	2255030	2255180	.	-	0	Parent=Os06t0142900-03
Chr06	irgsp1_rep	CDS	2254217	2254485	.	-	2	Parent=Os06t0142900-03
Chr06	irgsp1_rep	CDS	2253589	2253868	.	-	0	Parent=Os06t0142900-03
Chr06	irgsp1_rep	CDS	2252825	2253129	.	-	2	Parent=Os06t0142900-03
Chr06	irgsp1_rep	CDS	2252297	2252575	.	-	0	Parent=Os06t0142900-03
Chr06	irgsp1_rep	CDS	2251800	2252084	.	-	0	Parent=Os06t0142900-03
Chr06	irgsp1_rep	CDS	2251469	2251618	.	-	0	Parent=Os06t0142900-03
Chr06	irgsp1_rep	three_prime_UTR	2250559	2251468	.	-	.	Parent=Os06t0142900-03
Chr06	irgsp1_rep	mRNA	2256869	2260898	.	+	.	ID=Os06t0143000-01;Name=Os06t0143000-01;Locus_id=Os06g0143000;CGSNL Gene Symbol=SODB;CGSNL Gene Name=SUPEROXIDE DISMUTASE B;Oryzabase Gene Symbol Synonym(s)=SodB%2C Fe-SOD%2C Fe- SOD%2C OsFe-SOD%2C OsFe-SODa%2C OsFe-SODb%2C OsFSD1.2%2C FSD1.2%2C FeSOD2%2C OsFSD2%2C FSD2;Oryzabase Gene Name Synonym(s)=Superoxide dismutase B%2C Fe-dependent superoxide dismutase%2C iron superoxide dismutase%2C iron-superoxide dismutase%2C Fe-dependent SOD 1.2%2C Fe-superoxide dismutase 2;Note=Iron-superoxide dismutase (EC 1.15.1.1).;Transcript_evidence=AK062073 (DDBJ%2C Best hit),AK071301 (DDBJ%2C Best hit);ORF_evidence=B8B2C9 (UniProt);GO=Biological Process: superoxide metabolic process (GO:0006801),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: superoxide dismutase activity (GO:0004784),Molecular Function: metal ion binding (GO:0046872);InterPro=Manganese/iron superoxide dismutase (IPR001189),Manganese/iron superoxide dismutase%2C N-terminal (IPR019831),Manganese/iron superoxide dismutase%2C C-terminal (IPR019832),Manganese/iron superoxide dismutase%2C binding site (IPR019833);NIAS_FLcDNA=001-044-E11,J023087L08;Oryzabase=9278;Expression=AK062073;TENOR=Os06t0143000-01;KEGG=Os06t0143000-01 (EC:1.15.1.1)
Chr06	irgsp1_rep	five_prime_UTR	2256869	2256915	.	+	.	Parent=Os06t0143000-01
Chr06	irgsp1_rep	CDS	2256916	2256987	.	+	0	Parent=Os06t0143000-01
Chr06	irgsp1_rep	CDS	2257848	2257931	.	+	0	Parent=Os06t0143000-01
Chr06	irgsp1_rep	CDS	2258029	2258217	.	+	0	Parent=Os06t0143000-01
Chr06	irgsp1_rep	CDS	2258398	2258569	.	+	0	Parent=Os06t0143000-01
Chr06	irgsp1_rep	CDS	2258719	2258792	.	+	2	Parent=Os06t0143000-01
Chr06	irgsp1_rep	CDS	2258886	2258912	.	+	0	Parent=Os06t0143000-01
Chr06	irgsp1_rep	CDS	2258983	2259006	.	+	0	Parent=Os06t0143000-01
Chr06	irgsp1_rep	CDS	2259108	2259233	.	+	0	Parent=Os06t0143000-01
Chr06	irgsp1_rep	three_prime_UTR	2259234	2259289	.	+	.	Parent=Os06t0143000-01
Chr06	irgsp1_rep	three_prime_UTR	2260407	2260898	.	+	.	Parent=Os06t0143000-01
Chr06	irgsp1_rep	mRNA	2261681	2263972	.	-	.	ID=Os06t0143100-01;Name=Os06t0143100-01;Locus_id=Os06g0143100;CGSNL Gene Symbol=CDT2;CGSNL Gene Name=CADMIUM TOLERANT 2;Oryzabase Gene Symbol Synonym(s)=OsCDT2;Oryzabase Gene Name Synonym(s)=sativa DcCDT1 homologue 2%2C cadmium tolerance 2;Note=Similar to Cadmium tolerant 1.;Transcript_evidence=AK061597 (DDBJ%2C Best hit);ORF_evidence=B5BSU1 (UniProt);NIAS_FLcDNA=001-024-G09;Oryzabase=8299;Expression=AK061597;TENOR=Os06t0143100-01;KEGG=Os06t0143100-01
Chr06	irgsp1_rep	five_prime_UTR	2263878	2263972	.	-	.	Parent=Os06t0143100-01
Chr06	irgsp1_rep	CDS	2263792	2263877	.	-	0	Parent=Os06t0143100-01
Chr06	irgsp1_rep	CDS	2261909	2261990	.	-	1	Parent=Os06t0143100-01
Chr06	irgsp1_rep	three_prime_UTR	2261681	2261908	.	-	.	Parent=Os06t0143100-01
Chr06	irgsp1_rep	mRNA	2261683	2262754	.	-	.	ID=Os06t0143100-02;Name=Os06t0143100-02;Locus_id=Os06g0143100;CGSNL Gene Symbol=CDT2;CGSNL Gene Name=CADMIUM TOLERANT 2;Oryzabase Gene Symbol Synonym(s)=OsCDT2;Oryzabase Gene Name Synonym(s)=sativa DcCDT1 homologue 2%2C cadmium tolerance 2;Note=Similar to Cadmium tolerant 1.;Transcript_evidence=AK121057 (DDBJ%2C Best hit);ORF_evidence=B5BSU1 (UniProt);NIAS_FLcDNA=J023056I18;Oryzabase=8299;Expression=AK121057;TENOR=Os06t0143100-02;KEGG=Os06t0143100-02
Chr06	irgsp1_rep	five_prime_UTR	2262647	2262754	.	-	.	Parent=Os06t0143100-02
Chr06	irgsp1_rep	CDS	2262561	2262646	.	-	0	Parent=Os06t0143100-02
Chr06	irgsp1_rep	CDS	2261909	2261990	.	-	1	Parent=Os06t0143100-02
Chr06	irgsp1_rep	three_prime_UTR	2261683	2261908	.	-	.	Parent=Os06t0143100-02
Chr06	irgsp1_rep	mRNA	2274708	2279507	.	+	.	ID=Os06t0143400-01;Name=Os06t0143400-01;Locus_id=Os06g0143400;Oryzabase Gene Symbol Synonym(s)=FATB1%2C OsFATB1;Note=Similar to Acyl-ACP thioesterase (Fragment).;Transcript_evidence=AK072729 (DDBJ%2C Best hit),AK120946 (DDBJ%2C Best hit);ORF_evidence=A1YKG2 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Molecular Function: thiolester hydrolase activity (GO:0016790);InterPro=Acyl-ACP thioesterase (IPR002864),Acyl-ACP-thioesterase%2C N-terminal (IPR021113);NIAS_FLcDNA=J023141N24,J023037P17;Oryzabase=18129;TENOR=Os06t0143400-01
Chr06	irgsp1_rep	five_prime_UTR	2274708	2274848	.	+	.	Parent=Os06t0143400-01
Chr06	irgsp1_rep	five_prime_UTR	2275792	2275849	.	+	.	Parent=Os06t0143400-01
Chr06	irgsp1_rep	CDS	2275850	2276362	.	+	0	Parent=Os06t0143400-01
Chr06	irgsp1_rep	CDS	2276463	2276596	.	+	0	Parent=Os06t0143400-01
Chr06	irgsp1_rep	CDS	2277836	2277949	.	+	1	Parent=Os06t0143400-01
Chr06	irgsp1_rep	CDS	2278054	2278240	.	+	1	Parent=Os06t0143400-01
Chr06	irgsp1_rep	CDS	2278334	2278402	.	+	0	Parent=Os06t0143400-01
Chr06	irgsp1_rep	CDS	2278578	2278844	.	+	0	Parent=Os06t0143400-01
Chr06	irgsp1_rep	three_prime_UTR	2278845	2279507	.	+	.	Parent=Os06t0143400-01
Chr06	irgsp1_rep	mRNA	2282572	2284863	.	+	.	ID=Os06t0143500-00;Name=Os06t0143500-00;Locus_id=Os06g0143500;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q9SNP3 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os06t0143500-00
Chr06	irgsp1_rep	CDS	2282572	2284863	.	+	0	Parent=Os06t0143500-00
Chr06	irgsp1_rep	mRNA	2285947	2286434	.	-	.	ID=Os06t0143600-01;Name=Os06t0143600-01;Locus_id=Os06g0143600;Note=Similar to PRP38 pre-mRNA processing factor 38 domain containing B.;Transcript_evidence=AK061914 (DDBJ%2C Best hit);ORF_evidence=B6TSE1 (UniProt);NIAS_FLcDNA=001-042-A11;Expression=AK061914;TENOR=Os06t0143600-01;KEGG=Os06t0143600-01
Chr06	irgsp1_rep	CDS	2286315	2286434	.	-	0	Parent=Os06t0143600-01
Chr06	irgsp1_rep	three_prime_UTR	2285947	2286314	.	-	.	Parent=Os06t0143600-01
Chr06	irgsp1_rep	mRNA	2286306	2289497	.	+	.	ID=Os06t0143650-00;Name=Os06t0143650-00;Locus_id=Os06g0143650;Note=Non-protein coding transcript.;Transcript_evidence=tplb0040d24 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os06t0143650-00
Chr06	irgsp1_rep	exon	2286306	2287053	.	+	.	Parent=Os06t0143650-00
Chr06	irgsp1_rep	exon	2287942	2288264	.	+	.	Parent=Os06t0143650-00
Chr06	irgsp1_rep	exon	2288769	2288835	.	+	.	Parent=Os06t0143650-00
Chr06	irgsp1_rep	exon	2289189	2289497	.	+	.	Parent=Os06t0143650-00
Chr06	irgsp1_rep	mRNA	2292664	2298802	.	-	.	ID=Os06t0143700-01;Name=Os06t0143700-01;Locus_id=Os06g0143700;CGSNL Gene Symbol=SULTR3%3B4;CGSNL Gene Name=SULPHATE TRANSPORTER 3%3B4;Oryzabase Gene Symbol Synonym(s)=OsSultr3%3B4%2C OsSul3%3B4%2C OsaSULTR3%3B4%2C SPDT;Oryzabase Gene Name Synonym(s)=sulphate transporter 3%3B4%2C SULTR-like phosphorus distribution transporter;Note=Similar to Sulfate transporter 2.;Transcript_evidence=AK067270 (DDBJ%2C Best hit);ORF_evidence=NP_001148179.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: sulfate transport (GO:0008272),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: secondary active sulfate transmembrane transporter activity (GO:0008271);InterPro=Sulphate anion transporter (IPR001902),Sulphate transporter/antisigma-factor antagonist STAS (IPR002645),Sulphate transporter (IPR011547),Sulphate anion transporter%2C conserved site (IPR018045);NIAS_FLcDNA=J013098O05;Oryzabase=9323;Expression=AK067270;TENOR=Os06t0143700-01;KEGG=Os06t0143700-01
Chr06	irgsp1_rep	five_prime_UTR	2298737	2298802	.	-	.	Parent=Os06t0143700-01
Chr06	irgsp1_rep	CDS	2298349	2298736	.	-	0	Parent=Os06t0143700-01
Chr06	irgsp1_rep	CDS	2298207	2298254	.	-	2	Parent=Os06t0143700-01
Chr06	irgsp1_rep	CDS	2297923	2298130	.	-	2	Parent=Os06t0143700-01
Chr06	irgsp1_rep	CDS	2297575	2297812	.	-	1	Parent=Os06t0143700-01
Chr06	irgsp1_rep	CDS	2295448	2295555	.	-	0	Parent=Os06t0143700-01
Chr06	irgsp1_rep	CDS	2295215	2295331	.	-	0	Parent=Os06t0143700-01
Chr06	irgsp1_rep	CDS	2294986	2295112	.	-	0	Parent=Os06t0143700-01
Chr06	irgsp1_rep	CDS	2293766	2294329	.	-	2	Parent=Os06t0143700-01
Chr06	irgsp1_rep	CDS	2293350	2293426	.	-	2	Parent=Os06t0143700-01
Chr06	irgsp1_rep	CDS	2293079	2293216	.	-	0	Parent=Os06t0143700-01
Chr06	irgsp1_rep	three_prime_UTR	2292664	2293078	.	-	.	Parent=Os06t0143700-01
Chr06	irgsp1_rep	mRNA	2292756	2298739	.	+	.	ID=Os06t0143750-00;Name=Os06t0143750-00;Locus_id=Os06g0143750;Note=Hypothetical protein.;Transcript_evidence=tplb0059b17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0143750-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	2292756	2292939	.	+	.	Parent=Os06t0143750-00
Chr06	irgsp1_rep	five_prime_UTR	2293058	2293228	.	+	.	Parent=Os06t0143750-00
Chr06	irgsp1_rep	five_prime_UTR	2293707	2294300	.	+	.	Parent=Os06t0143750-00
Chr06	irgsp1_rep	five_prime_UTR	2294959	2295123	.	+	.	Parent=Os06t0143750-00
Chr06	irgsp1_rep	five_prime_UTR	2295227	2295331	.	+	.	Parent=Os06t0143750-00
Chr06	irgsp1_rep	five_prime_UTR	2295448	2295543	.	+	.	Parent=Os06t0143750-00
Chr06	irgsp1_rep	five_prime_UTR	2297563	2297700	.	+	.	Parent=Os06t0143750-00
Chr06	irgsp1_rep	CDS	2297701	2297814	.	+	0	Parent=Os06t0143750-00
Chr06	irgsp1_rep	CDS	2297925	2298147	.	+	0	Parent=Os06t0143750-00
Chr06	irgsp1_rep	CDS	2298225	2298243	.	+	2	Parent=Os06t0143750-00
Chr06	irgsp1_rep	CDS	2298337	2298739	.	+	1	Parent=Os06t0143750-00
Chr06	irgsp1_rep	mRNA	2300761	2301236	.	-	.	ID=Os06t0143800-01;Name=Os06t0143800-01;Locus_id=Os06g0143800;Note=Non-protein coding transcript.;Transcript_evidence=AK121251 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023101K12;TENOR=Os06t0143800-01
Chr06	irgsp1_rep	exon	2300761	2301236	.	-	.	Parent=Os06t0143800-01
Chr06	irgsp1_rep	mRNA	2320837	2329651	.	-	.	ID=Os06t0143900-01;Name=Os06t0143900-01;Locus_id=Os06g0143900;Oryzabase Gene Symbol Synonym(s)=OsWD40-125;Oryzabase Gene Name Synonym(s)=beta prime COP coatomer protein;Note=Similar to Coatomer protein complex%2C beta prime%3B beta'-COP protein.;Transcript_evidence=AK111584 (DDBJ%2C Best hit);ORF_evidence=A1YKF7 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: membrane coat (GO:0030117),Molecular Function: structural molecule activity (GO:0005198),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),Coatomer%2C WD associated region (IPR006692),WD40 repeat-like-containing domain (IPR011046),Tetratricopeptide-like helical (IPR011990),WD40/YVTN repeat-like-containing domain (IPR015943),Coatomer%2C beta&apos%3B subunit (IPR016453),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J013089O14;Oryzabase=10806;Expression=AK111584;TENOR=Os06t0143900-01;KEGG=Os06t0143900-01
Chr06	irgsp1_rep	five_prime_UTR	2329475	2329651	.	-	.	Parent=Os06t0143900-01
Chr06	irgsp1_rep	CDS	2329472	2329474	.	-	0	Parent=Os06t0143900-01
Chr06	irgsp1_rep	CDS	2329297	2329317	.	-	0	Parent=Os06t0143900-01
Chr06	irgsp1_rep	CDS	2329111	2329173	.	-	0	Parent=Os06t0143900-01
Chr06	irgsp1_rep	CDS	2328934	2328987	.	-	0	Parent=Os06t0143900-01
Chr06	irgsp1_rep	CDS	2328175	2328211	.	-	0	Parent=Os06t0143900-01
Chr06	irgsp1_rep	CDS	2327764	2328089	.	-	2	Parent=Os06t0143900-01
Chr06	irgsp1_rep	CDS	2327534	2327665	.	-	0	Parent=Os06t0143900-01
Chr06	irgsp1_rep	CDS	2327301	2327449	.	-	0	Parent=Os06t0143900-01
Chr06	irgsp1_rep	CDS	2326726	2326794	.	-	1	Parent=Os06t0143900-01
Chr06	irgsp1_rep	CDS	2326453	2326603	.	-	1	Parent=Os06t0143900-01
Chr06	irgsp1_rep	CDS	2326306	2326371	.	-	0	Parent=Os06t0143900-01
Chr06	irgsp1_rep	CDS	2325679	2325867	.	-	0	Parent=Os06t0143900-01
Chr06	irgsp1_rep	CDS	2324919	2325059	.	-	0	Parent=Os06t0143900-01
Chr06	irgsp1_rep	CDS	2324754	2324828	.	-	0	Parent=Os06t0143900-01
Chr06	irgsp1_rep	CDS	2324453	2324629	.	-	0	Parent=Os06t0143900-01
Chr06	irgsp1_rep	CDS	2324261	2324352	.	-	0	Parent=Os06t0143900-01
Chr06	irgsp1_rep	CDS	2324068	2324184	.	-	1	Parent=Os06t0143900-01
Chr06	irgsp1_rep	CDS	2323512	2323626	.	-	1	Parent=Os06t0143900-01
Chr06	irgsp1_rep	CDS	2323319	2323390	.	-	0	Parent=Os06t0143900-01
Chr06	irgsp1_rep	CDS	2322760	2322956	.	-	0	Parent=Os06t0143900-01
Chr06	irgsp1_rep	CDS	2322580	2322673	.	-	1	Parent=Os06t0143900-01
Chr06	irgsp1_rep	CDS	2322361	2322467	.	-	0	Parent=Os06t0143900-01
Chr06	irgsp1_rep	CDS	2322100	2322244	.	-	1	Parent=Os06t0143900-01
Chr06	irgsp1_rep	CDS	2321799	2321910	.	-	0	Parent=Os06t0143900-01
Chr06	irgsp1_rep	CDS	2321325	2321344	.	-	2	Parent=Os06t0143900-01
Chr06	irgsp1_rep	three_prime_UTR	2320837	2321324	.	-	.	Parent=Os06t0143900-01
Chr06	irgsp1_rep	mRNA	2320914	2324286	.	-	.	ID=Os06t0143900-02;Name=Os06t0143900-02;Locus_id=Os06g0143900;Oryzabase Gene Symbol Synonym(s)=OsWD40-125;Oryzabase Gene Name Synonym(s)=beta prime COP coatomer protein;Note=Similar to Coatomer complex subunit.;Transcript_evidence=AK061962 (DDBJ%2C Best hit);ORF_evidence=A1YKF7 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: membrane coat (GO:0030117),Molecular Function: structural molecule activity (GO:0005198),Molecular Function: binding (GO:0005488);InterPro=Coatomer%2C WD associated region (IPR006692),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-042-G04;Oryzabase=10806;Expression=AK061962;TENOR=Os06t0143900-02;KEGG=Os06t0143900-02
Chr06	irgsp1_rep	CDS	2324261	2324286	.	-	0	Parent=Os06t0143900-02
Chr06	irgsp1_rep	CDS	2324068	2324184	.	-	1	Parent=Os06t0143900-02
Chr06	irgsp1_rep	CDS	2323512	2323626	.	-	1	Parent=Os06t0143900-02
Chr06	irgsp1_rep	CDS	2323319	2323390	.	-	0	Parent=Os06t0143900-02
Chr06	irgsp1_rep	CDS	2322760	2322956	.	-	0	Parent=Os06t0143900-02
Chr06	irgsp1_rep	CDS	2322580	2322673	.	-	1	Parent=Os06t0143900-02
Chr06	irgsp1_rep	CDS	2322361	2322467	.	-	0	Parent=Os06t0143900-02
Chr06	irgsp1_rep	CDS	2322100	2322244	.	-	1	Parent=Os06t0143900-02
Chr06	irgsp1_rep	CDS	2321767	2321910	.	-	0	Parent=Os06t0143900-02
Chr06	irgsp1_rep	three_prime_UTR	2321725	2321766	.	-	.	Parent=Os06t0143900-02
Chr06	irgsp1_rep	three_prime_UTR	2320914	2321344	.	-	.	Parent=Os06t0143900-02
Chr06	irgsp1_rep	mRNA	2320837	2323572	.	-	.	ID=Os06t0143900-03;Name=Os06t0143900-03;Locus_id=Os06g0143900;Oryzabase Gene Symbol Synonym(s)=OsWD40-125;Oryzabase Gene Name Synonym(s)=beta prime COP coatomer protein;Note=Similar to Coatomer complex subunit.;Transcript_evidence=AK103948 (DDBJ%2C Best hit);ORF_evidence=A1YKF7 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: membrane coat (GO:0030117),Molecular Function: structural molecule activity (GO:0005198),Molecular Function: binding (GO:0005488);InterPro=Coatomer%2C WD associated region (IPR006692),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-014-B05;Oryzabase=10806;Expression=AK103948;TENOR=Os06t0143900-03;KEGG=Os06t0143900-03
Chr06	irgsp1_rep	five_prime_UTR	2323572	2323572	.	-	.	Parent=Os06t0143900-03
Chr06	irgsp1_rep	CDS	2323512	2323571	.	-	0	Parent=Os06t0143900-03
Chr06	irgsp1_rep	CDS	2323319	2323390	.	-	0	Parent=Os06t0143900-03
Chr06	irgsp1_rep	CDS	2322760	2322956	.	-	0	Parent=Os06t0143900-03
Chr06	irgsp1_rep	CDS	2322568	2322673	.	-	1	Parent=Os06t0143900-03
Chr06	irgsp1_rep	three_prime_UTR	2322361	2322567	.	-	.	Parent=Os06t0143900-03
Chr06	irgsp1_rep	three_prime_UTR	2322100	2322244	.	-	.	Parent=Os06t0143900-03
Chr06	irgsp1_rep	three_prime_UTR	2321755	2321910	.	-	.	Parent=Os06t0143900-03
Chr06	irgsp1_rep	three_prime_UTR	2320837	2321344	.	-	.	Parent=Os06t0143900-03
Chr06	irgsp1_rep	mRNA	2327617	2329175	.	+	.	ID=Os06t0143950-00;Name=Os06t0143950-00;Locus_id=Os06g0143950;Note=Non-protein coding transcript.;Transcript_evidence=BT086934 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0143950-00
Chr06	irgsp1_rep	exon	2327617	2327670	.	+	.	Parent=Os06t0143950-00
Chr06	irgsp1_rep	exon	2327772	2328170	.	+	.	Parent=Os06t0143950-00
Chr06	irgsp1_rep	exon	2329095	2329175	.	+	.	Parent=Os06t0143950-00
Chr06	irgsp1_rep	mRNA	2329883	2334421	.	+	.	ID=Os06t0144000-01;Name=Os06t0144000-01;Locus_id=Os06g0144000;Oryzabase Gene Symbol Synonym(s)=OsXRCC1;Oryzabase Gene Name Synonym(s)=X-ray repair cross complementing protein 1;Note=BRCT domain containing protein.;Transcript_evidence=AK068998 (DDBJ%2C Best hit);ORF_evidence=A1YKF6 (UniProt);GO=Cellular Component: intracellular (GO:0005622);InterPro=BRCT (IPR001357);NIAS_FLcDNA=J023001F16;Oryzabase=14697;Expression=AK068998;TENOR=Os06t0144000-01;KEGG=Os06t0144000-01
Chr06	irgsp1_rep	five_prime_UTR	2329883	2330001	.	+	.	Parent=Os06t0144000-01
Chr06	irgsp1_rep	five_prime_UTR	2330092	2330119	.	+	.	Parent=Os06t0144000-01
Chr06	irgsp1_rep	CDS	2330120	2330284	.	+	0	Parent=Os06t0144000-01
Chr06	irgsp1_rep	CDS	2330396	2330584	.	+	0	Parent=Os06t0144000-01
Chr06	irgsp1_rep	CDS	2331414	2331525	.	+	0	Parent=Os06t0144000-01
Chr06	irgsp1_rep	CDS	2332403	2332482	.	+	2	Parent=Os06t0144000-01
Chr06	irgsp1_rep	CDS	2333030	2333140	.	+	0	Parent=Os06t0144000-01
Chr06	irgsp1_rep	CDS	2333588	2333674	.	+	0	Parent=Os06t0144000-01
Chr06	irgsp1_rep	CDS	2333987	2334286	.	+	0	Parent=Os06t0144000-01
Chr06	irgsp1_rep	three_prime_UTR	2334287	2334421	.	+	.	Parent=Os06t0144000-01
Chr06	irgsp1_rep	mRNA	2336434	2338188	.	-	.	ID=Os06t0144200-01;Name=Os06t0144200-01;Locus_id=Os06g0144200;Oryzabase Gene Symbol Synonym(s)=OsPLL6%2C PLL6;Oryzabase Gene Name Synonym(s)=Pectate lyase-like 6;Note=Similar to Pectate lyase homolog (EC 4.2.2.2).;Transcript_evidence=AK100191 (DDBJ%2C Best hit);ORF_evidence=Q43862 (UniProt);GO=Molecular Function: pectate lyase activity (GO:0030570);InterPro=Pectate lyase/Amb allergen (IPR002022),Parallel beta-helix repeat (IPR006626),Pectate lyase%2C N-terminal (IPR007524),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),AmbAllergen (IPR018082);NIAS_FLcDNA=J023035P11;Oryzabase=22491;Expression=AK100191;TENOR=Os06t0144200-01;KEGG=Os06t0144200-01 (EC:4.2.2.2)
Chr06	irgsp1_rep	five_prime_UTR	2338036	2338188	.	-	.	Parent=Os06t0144200-01
Chr06	irgsp1_rep	CDS	2337038	2338035	.	-	0	Parent=Os06t0144200-01
Chr06	irgsp1_rep	CDS	2336585	2336939	.	-	1	Parent=Os06t0144200-01
Chr06	irgsp1_rep	three_prime_UTR	2336434	2336584	.	-	.	Parent=Os06t0144200-01
Chr06	irgsp1_rep	mRNA	2358310	2365515	.	-	.	ID=Os06t0144600-01;Name=Os06t0144600-01;Locus_id=Os06g0144600;Note=Similar to Zinc carboxy peptidase.;Transcript_evidence=AK067250 (DDBJ%2C Best hit);ORF_evidence=A1YKF5 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: metallocarboxypeptidase activity (GO:0004181),Molecular Function: zinc ion binding (GO:0008270);InterPro=Peptidase M14%2C carboxypeptidase A (IPR000834);NIAS_FLcDNA=J013098L05;TENOR=Os06t0144600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	2365499	2365515	.	-	.	Parent=Os06t0144600-01
Chr06	irgsp1_rep	CDS	2365399	2365498	.	-	0	Parent=Os06t0144600-01
Chr06	irgsp1_rep	CDS	2364823	2364883	.	-	2	Parent=Os06t0144600-01
Chr06	irgsp1_rep	CDS	2364621	2364716	.	-	1	Parent=Os06t0144600-01
Chr06	irgsp1_rep	CDS	2363907	2363937	.	-	1	Parent=Os06t0144600-01
Chr06	irgsp1_rep	CDS	2363767	2363823	.	-	0	Parent=Os06t0144600-01
Chr06	irgsp1_rep	CDS	2362767	2362862	.	-	0	Parent=Os06t0144600-01
Chr06	irgsp1_rep	CDS	2362377	2362613	.	-	0	Parent=Os06t0144600-01
Chr06	irgsp1_rep	three_prime_UTR	2362292	2362376	.	-	.	Parent=Os06t0144600-01
Chr06	irgsp1_rep	three_prime_UTR	2361220	2361266	.	-	.	Parent=Os06t0144600-01
Chr06	irgsp1_rep	three_prime_UTR	2360683	2360808	.	-	.	Parent=Os06t0144600-01
Chr06	irgsp1_rep	three_prime_UTR	2360467	2360569	.	-	.	Parent=Os06t0144600-01
Chr06	irgsp1_rep	three_prime_UTR	2359329	2360368	.	-	.	Parent=Os06t0144600-01
Chr06	irgsp1_rep	three_prime_UTR	2359050	2359113	.	-	.	Parent=Os06t0144600-01
Chr06	irgsp1_rep	three_prime_UTR	2358310	2358732	.	-	.	Parent=Os06t0144600-01
Chr06	irgsp1_rep	mRNA	2366746	2372091	.	-	.	ID=Os06t0144800-01;Name=Os06t0144800-01;Locus_id=Os06g0144800;Note=Similar to GTP-binding protein lepA.;Transcript_evidence=AK103630 (DDBJ%2C Best hit);ORF_evidence=B8B2R1 (UniProt);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Translation elongation factor EFG/EF2%2C C-terminal (IPR000640),Protein synthesis factor%2C GTP-binding (IPR000795),Small GTP-binding protein domain (IPR005225),GTP-binding protein LepA (IPR006297),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Elongation factor G/III/V (IPR009022),GTP-binding protein LepA%2C C-terminal (IPR013842);NIAS_FLcDNA=J033133P12;Expression=AK103630;TENOR=Os06t0144800-01;KEGG=Os06t0144800-01
Chr06	irgsp1_rep	five_prime_UTR	2372045	2372091	.	-	.	Parent=Os06t0144800-01
Chr06	irgsp1_rep	CDS	2371751	2372044	.	-	0	Parent=Os06t0144800-01
Chr06	irgsp1_rep	CDS	2370592	2371342	.	-	0	Parent=Os06t0144800-01
Chr06	irgsp1_rep	CDS	2370271	2370427	.	-	2	Parent=Os06t0144800-01
Chr06	irgsp1_rep	CDS	2370122	2370176	.	-	1	Parent=Os06t0144800-01
Chr06	irgsp1_rep	CDS	2369734	2369801	.	-	0	Parent=Os06t0144800-01
Chr06	irgsp1_rep	CDS	2369555	2369659	.	-	1	Parent=Os06t0144800-01
Chr06	irgsp1_rep	CDS	2369380	2369451	.	-	1	Parent=Os06t0144800-01
Chr06	irgsp1_rep	CDS	2369183	2369296	.	-	1	Parent=Os06t0144800-01
Chr06	irgsp1_rep	CDS	2368331	2368471	.	-	1	Parent=Os06t0144800-01
Chr06	irgsp1_rep	CDS	2368071	2368130	.	-	1	Parent=Os06t0144800-01
Chr06	irgsp1_rep	CDS	2367201	2367375	.	-	1	Parent=Os06t0144800-01
Chr06	irgsp1_rep	three_prime_UTR	2367105	2367200	.	-	.	Parent=Os06t0144800-01
Chr06	irgsp1_rep	three_prime_UTR	2366746	2367016	.	-	.	Parent=Os06t0144800-01
Chr06	irgsp1_rep	mRNA	2367179	2372101	.	+	.	ID=Os06t0144850-00;Name=Os06t0144850-00;Locus_id=Os06g0144850;Note=Hypothetical protein.;Transcript_evidence=tplb0047c16 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0144850-00
Chr06	irgsp1_rep	five_prime_UTR	2367179	2367375	.	+	.	Parent=Os06t0144850-00
Chr06	irgsp1_rep	five_prime_UTR	2368071	2368132	.	+	.	Parent=Os06t0144850-00
Chr06	irgsp1_rep	five_prime_UTR	2368333	2368473	.	+	.	Parent=Os06t0144850-00
Chr06	irgsp1_rep	five_prime_UTR	2369187	2369355	.	+	.	Parent=Os06t0144850-00
Chr06	irgsp1_rep	CDS	2369356	2369467	.	+	0	Parent=Os06t0144850-00
Chr06	irgsp1_rep	CDS	2369574	2369683	.	+	2	Parent=Os06t0144850-00
Chr06	irgsp1_rep	three_prime_UTR	2369684	2369797	.	+	.	Parent=Os06t0144850-00
Chr06	irgsp1_rep	three_prime_UTR	2370114	2370178	.	+	.	Parent=Os06t0144850-00
Chr06	irgsp1_rep	three_prime_UTR	2370277	2371348	.	+	.	Parent=Os06t0144850-00
Chr06	irgsp1_rep	three_prime_UTR	2371757	2372101	.	+	.	Parent=Os06t0144850-00
Chr06	irgsp1_rep	mRNA	2372992	2374946	.	+	.	ID=Os06t0144900-01;Name=Os06t0144900-01;Locus_id=Os06g0144900;Oryzabase Gene Symbol Synonym(s)=OsPLL7%2C PLL7;Oryzabase Gene Name Synonym(s)=Pectate lyase-like 7;Note=Pectate lyase/Amb allergen domain containing protein.;Transcript_evidence=AK070509 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Molecular Function: pectate lyase activity (GO:0030570);InterPro=Pectate lyase/Amb allergen (IPR002022),Pectate lyase%2C N-terminal (IPR007524),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),AmbAllergen (IPR018082);NIAS_FLcDNA=J023054E18;Oryzabase=22492;TENOR=Os06t0144900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	2372992	2373108	.	+	.	Parent=Os06t0144900-01
Chr06	irgsp1_rep	CDS	2373109	2374065	.	+	0	Parent=Os06t0144900-01
Chr06	irgsp1_rep	CDS	2374154	2374618	.	+	0	Parent=Os06t0144900-01
Chr06	irgsp1_rep	three_prime_UTR	2374619	2374946	.	+	.	Parent=Os06t0144900-01
Chr06	irgsp1_rep	mRNA	2380595	2382936	.	+	.	ID=Os06t0145200-01;Name=Os06t0145200-01;Locus_id=Os06g0145200;Note=Transferase family protein.;Transcript_evidence=AK109544 (DDBJ%2C Best hit);ORF_evidence=A2Y974 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=002-120-D08;Expression=AK109544;TENOR=Os06t0145200-01;KEGG=Os06t0145200-01
Chr06	irgsp1_rep	five_prime_UTR	2380595	2380617	.	+	.	Parent=Os06t0145200-01
Chr06	irgsp1_rep	CDS	2380618	2381367	.	+	0	Parent=Os06t0145200-01
Chr06	irgsp1_rep	CDS	2381487	2382209	.	+	0	Parent=Os06t0145200-01
Chr06	irgsp1_rep	three_prime_UTR	2382210	2382936	.	+	.	Parent=Os06t0145200-01
Chr06	irgsp1_rep	mRNA	2384313	2386240	.	+	.	ID=Os06t0145300-00;Name=Os06t0145300-00;Locus_id=Os06g0145300;Note=Transferase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3B8C8 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os06t0145300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	2384313	2384440	.	+	0	Parent=Os06t0145300-00
Chr06	irgsp1_rep	CDS	2385011	2385065	.	+	1	Parent=Os06t0145300-00
Chr06	irgsp1_rep	CDS	2385524	2386240	.	+	0	Parent=Os06t0145300-00
Chr06	irgsp1_rep	mRNA	2387398	2390156	.	+	.	ID=Os06t0145400-00;Name=Os06t0145400-00;Locus_id=Os06g0145400;Note=Transferase domain containing protein.;Transcript_evidence=AK332289 (DDBJ);ORF_evidence=Q5VP58 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os06t0145400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	2387398	2388182	.	+	0	Parent=Os06t0145400-00
Chr06	irgsp1_rep	CDS	2389307	2390156	.	+	1	Parent=Os06t0145400-00
Chr06	irgsp1_rep	mRNA	2394821	2396562	.	+	.	ID=Os06t0145600-01;Name=Os06t0145600-01;Locus_id=Os06g0145600;Note=Transferase family protein.;Transcript_evidence=AK106249 (DDBJ%2C Best hit);ORF_evidence=B8B2M3 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=002-100-D11;Expression=AK106249;TENOR=Os06t0145600-01;KEGG=Os06t0145600-01
Chr06	irgsp1_rep	five_prime_UTR	2394821	2394889	.	+	.	Parent=Os06t0145600-01
Chr06	irgsp1_rep	CDS	2394890	2395618	.	+	0	Parent=Os06t0145600-01
Chr06	irgsp1_rep	CDS	2395687	2396415	.	+	0	Parent=Os06t0145600-01
Chr06	irgsp1_rep	three_prime_UTR	2396416	2396562	.	+	.	Parent=Os06t0145600-01
Chr06	irgsp1_rep	mRNA	2399691	2402590	.	-	.	ID=Os06t0145700-01;Name=Os06t0145700-01;Locus_id=Os06g0145700;RAP-DB Gene Symbol Synonym(s)=OsWRI4;CGSNL Gene Symbol=WRI4;CGSNL Gene Name=WRINKLED4;Oryzabase Gene Symbol Synonym(s)=AP2/EREBP99%2C AP2/EREBP#099%2C OsWRI4;Oryzabase Gene Name Synonym(s)=APETALA2/ethylene-responsive element binding protein 99%2C WRINKLED 4%2C WRI1 like protein 4;Note=WRI1 homolog;Transcript_evidence=Inferred from literature;ORF_evidence=Q5VP53;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-binding transcription factor activity (GO:0003700);InterPro=DNA-binding domain superfamily (IPR016177),AP2/ERF domain superfamily (IPR036955),AP2/ERF domain (IPR001471);Manual Curation=February 21%2C 2020;Literature_PMID=31277505;Oryzabase=10662;TENOR=Os06t0145700-00
Chr06	irgsp1_rep	CDS	2402331	2402590	.	-	0	Parent=Os06t0145700-01
Chr06	irgsp1_rep	CDS	2401882	2401964	.	-	1	Parent=Os06t0145700-01
Chr06	irgsp1_rep	CDS	2401693	2401790	.	-	2	Parent=Os06t0145700-01
Chr06	irgsp1_rep	CDS	2401463	2401536	.	-	0	Parent=Os06t0145700-01
Chr06	irgsp1_rep	CDS	2400941	2400991	.	-	1	Parent=Os06t0145700-01
Chr06	irgsp1_rep	CDS	2399691	2400324	.	-	1	Parent=Os06t0145700-01
Chr06	irgsp1_rep	mRNA	2405409	2408049	.	+	.	ID=Os06t0145800-00;Name=Os06t0145800-00;Locus_id=Os06g0145800;CGSNL Gene Symbol=WHY1;CGSNL Gene Name=WHIRLY TRANSCRIPTION FACTOR 1;Oryzabase Gene Symbol Synonym(s)=OsWHY1;Oryzabase Gene Name Synonym(s)=Whirly transcription factor 1;Note=Similar to Whirly family nucleic acid binding protein.;Transcript_evidence=CT836194 (DDBJ%2C Best hit);ORF_evidence=B2LXS7 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: binding (GO:0005488);InterPro=ssDNA-binding transcriptional regulator (IPR009044),Plant transcription factor (IPR013742);Oryzabase=23749;TENOR=Os06t0145800-00;KEGG=Os06t0145800-00
Chr06	irgsp1_rep	five_prime_UTR	2405409	2405466	.	+	.	Parent=Os06t0145800-00
Chr06	irgsp1_rep	CDS	2405467	2405820	.	+	0	Parent=Os06t0145800-00
Chr06	irgsp1_rep	CDS	2405925	2406017	.	+	0	Parent=Os06t0145800-00
Chr06	irgsp1_rep	CDS	2406436	2406530	.	+	0	Parent=Os06t0145800-00
Chr06	irgsp1_rep	CDS	2407154	2407227	.	+	1	Parent=Os06t0145800-00
Chr06	irgsp1_rep	CDS	2407315	2407403	.	+	2	Parent=Os06t0145800-00
Chr06	irgsp1_rep	CDS	2407753	2407866	.	+	0	Parent=Os06t0145800-00
Chr06	irgsp1_rep	three_prime_UTR	2407867	2408049	.	+	.	Parent=Os06t0145800-00
Chr06	irgsp1_rep	mRNA	2407656	2409373	.	-	.	ID=Os06t0145950-01;Name=Os06t0145950-01;Locus_id=Os06g0145950;Note=Hypothetical conserved gene.;Transcript_evidence=AK287655 (DDBJ%2C Best hit);ORF_evidence=NP_001174596.1 (RefSeq);NIAS_FLcDNA=J065097B15;TENOR=Os06t0145950-01;KEGG=Os06t0145950-01
Chr06	irgsp1_rep	five_prime_UTR	2409373	2409373	.	-	.	Parent=Os06t0145950-01
Chr06	irgsp1_rep	CDS	2408803	2409372	.	-	0	Parent=Os06t0145950-01
Chr06	irgsp1_rep	three_prime_UTR	2407656	2408802	.	-	.	Parent=Os06t0145950-01
Chr06	irgsp1_rep	mRNA	2410176	2418566	.	+	.	ID=Os06t0146100-01;Name=Os06t0146100-01;Locus_id=Os06g0146100;CGSNL Gene Symbol=PI9;CGSNL Gene Name=PYRICULARIA ORYZAE RESISTANCE 9;Oryzabase Gene Symbol Synonym(s)=Pi9(t)%2C Pi9(t)*%2C Pi9%2C Pi-9(t);Oryzabase Gene Name Synonym(s)=Pyricularia oryzae resistance 9%2C Magnaporthe grisea resistance-9%2C Blast resistance 9;Note=NB-ARC domain containing protein.;Transcript_evidence=AK120452 (DDBJ%2C Best hit);ORF_evidence=Q1WGB0 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013103K24;Oryzabase=717;Expression=AK120452;TENOR=Os06t0146100-01;KEGG=Os06t0146100-01
Chr06	irgsp1_rep	five_prime_UTR	2410176	2410327	.	+	.	Parent=Os06t0146100-01
Chr06	irgsp1_rep	CDS	2410328	2410443	.	+	0	Parent=Os06t0146100-01
Chr06	irgsp1_rep	CDS	2413785	2416692	.	+	1	Parent=Os06t0146100-01
Chr06	irgsp1_rep	CDS	2416787	2416843	.	+	0	Parent=Os06t0146100-01
Chr06	irgsp1_rep	three_prime_UTR	2416844	2416993	.	+	.	Parent=Os06t0146100-01
Chr06	irgsp1_rep	three_prime_UTR	2417116	2417216	.	+	.	Parent=Os06t0146100-01
Chr06	irgsp1_rep	three_prime_UTR	2417647	2417903	.	+	.	Parent=Os06t0146100-01
Chr06	irgsp1_rep	three_prime_UTR	2417985	2418566	.	+	.	Parent=Os06t0146100-01
Chr06	irgsp1_rep	mRNA	2418705	2422483	.	+	.	ID=Os06t0146200-02;Name=Os06t0146200-02;Locus_id=Os06g0146200;Note=Conserved hypothetical protein.;Transcript_evidence=AK065556 (DDBJ%2C Best hit),AK120643 (DDBJ%2C Best hit);ORF_evidence=B8B2N5 (UniProt);NIAS_FLcDNA=J013028C04,J013154P06;TENOR=Os06t0146200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	2418705	2421571	.	+	.	Parent=Os06t0146200-02
Chr06	irgsp1_rep	CDS	2421572	2421688	.	+	0	Parent=Os06t0146200-02
Chr06	irgsp1_rep	three_prime_UTR	2421689	2422483	.	+	.	Parent=Os06t0146200-02
Chr06	irgsp1_rep	mRNA	2428013	2433345	.	+	.	ID=Os06t0146250-00;Name=Os06t0146250-00;Locus_id=Os06g0146250;CGSNL Gene Symbol=WRKY73;CGSNL Gene Name=WRKY GENE 73;Oryzabase Gene Symbol Synonym(s)=OsWRKY73;Oryzabase Gene Name Synonym(s)=Rice WRKY gene73;Note=Similar to WRKY transcription factor 73.;Transcript_evidence=tplb0022o17 (Wheat FLcDNA);ORF_evidence=Q6IEK8 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6588;TENOR=Os06t0146250-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	2428013	2428129	.	+	0	Parent=Os06t0146250-00
Chr06	irgsp1_rep	CDS	2428593	2428670	.	+	0	Parent=Os06t0146250-00
Chr06	irgsp1_rep	CDS	2429113	2429679	.	+	0	Parent=Os06t0146250-00
Chr06	irgsp1_rep	CDS	2429830	2429943	.	+	0	Parent=Os06t0146250-00
Chr06	irgsp1_rep	CDS	2432316	2433254	.	+	0	Parent=Os06t0146250-00
Chr06	irgsp1_rep	three_prime_UTR	2433255	2433345	.	+	.	Parent=Os06t0146250-00
Chr06	irgsp1_rep	mRNA	2433533	2437377	.	-	.	ID=Os06t0146300-01;Name=Os06t0146300-01;Locus_id=Os06g0146300;Note=Conserved hypothetical protein.;Transcript_evidence=AK101052 (DDBJ%2C Best hit);ORF_evidence=B8B2N6 (UniProt);NIAS_FLcDNA=J033012O18;TENOR=Os06t0146300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	2437108	2437377	.	-	.	Parent=Os06t0146300-01
Chr06	irgsp1_rep	CDS	2436607	2437107	.	-	0	Parent=Os06t0146300-01
Chr06	irgsp1_rep	three_prime_UTR	2436552	2436606	.	-	.	Parent=Os06t0146300-01
Chr06	irgsp1_rep	three_prime_UTR	2436261	2436343	.	-	.	Parent=Os06t0146300-01
Chr06	irgsp1_rep	three_prime_UTR	2435573	2435687	.	-	.	Parent=Os06t0146300-01
Chr06	irgsp1_rep	three_prime_UTR	2435087	2435178	.	-	.	Parent=Os06t0146300-01
Chr06	irgsp1_rep	three_prime_UTR	2434482	2434547	.	-	.	Parent=Os06t0146300-01
Chr06	irgsp1_rep	three_prime_UTR	2434288	2434381	.	-	.	Parent=Os06t0146300-01
Chr06	irgsp1_rep	three_prime_UTR	2433533	2433941	.	-	.	Parent=Os06t0146300-01
Chr06	irgsp1_rep	mRNA	2437599	2439795	.	-	.	ID=Os06t0146400-01;Name=Os06t0146400-01;Locus_id=Os06g0146400;CGSNL Gene Symbol=ISC7;CGSNL Gene Name=IRON-SULFUR CLUSTER PROTEIN 7;Oryzabase Gene Symbol Synonym(s)=OsISC7;Oryzabase Gene Name Synonym(s)=Iron-sulfur cluster protein 7;Note=FeS cluster insertion domain containing protein.;Transcript_evidence=AK070964 (DDBJ%2C Best hit);ORF_evidence=NP_001149228.1 (RefSeq);GO=Biological Process: iron-sulfur cluster assembly (GO:0016226),Molecular Function: structural molecule activity (GO:0005198),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=FeS cluster biogenesis (IPR000361),FeS cluster insertion (IPR016092),FeS cluster insertion%2C C-terminal%2C conserved site (IPR017870);NIAS_FLcDNA=J023067D06;Oryzabase=13422;Expression=AK070964;TENOR=Os06t0146400-01;KEGG=Os06t0146400-01
Chr06	irgsp1_rep	five_prime_UTR	2439691	2439795	.	-	.	Parent=Os06t0146400-01
Chr06	irgsp1_rep	CDS	2439534	2439690	.	-	0	Parent=Os06t0146400-01
Chr06	irgsp1_rep	CDS	2438265	2438492	.	-	2	Parent=Os06t0146400-01
Chr06	irgsp1_rep	CDS	2437787	2437962	.	-	2	Parent=Os06t0146400-01
Chr06	irgsp1_rep	three_prime_UTR	2437599	2437786	.	-	.	Parent=Os06t0146400-01
Chr06	irgsp1_rep	mRNA	2437774	2439904	.	+	.	ID=Os06t0146500-00;Name=Os06t0146500-00;Locus_id=Os06g0146500;Note=Hypothetical conserved gene.;Transcript_evidence=BT065149 (DDBJ);ORF_evidence=C0PA30 (UniProt);TENOR=Os06t0146500-00;KEGG=Os06t0146500-00
Chr06	irgsp1_rep	five_prime_UTR	2437774	2437954	.	+	.	Parent=Os06t0146500-00
Chr06	irgsp1_rep	five_prime_UTR	2438251	2438344	.	+	.	Parent=Os06t0146500-00
Chr06	irgsp1_rep	CDS	2438345	2438489	.	+	0	Parent=Os06t0146500-00
Chr06	irgsp1_rep	CDS	2439534	2439904	.	+	2	Parent=Os06t0146500-00
Chr06	irgsp1_rep	mRNA	2441703	2442549	.	-	.	ID=Os06t0146600-01;Name=Os06t0146600-01;Locus_id=Os06g0146600;Note=Hypothetical protein.;Transcript_evidence=AK121663 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J033064J17;TENOR=Os06t0146600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	2442169	2442549	.	-	0	Parent=Os06t0146600-01
Chr06	irgsp1_rep	three_prime_UTR	2442013	2442168	.	-	.	Parent=Os06t0146600-01
Chr06	irgsp1_rep	three_prime_UTR	2441703	2441913	.	-	.	Parent=Os06t0146600-01
Chr06	irgsp1_rep	mRNA	2442184	2442493	.	+	.	ID=Os06t0146650-00;Name=Os06t0146650-00;Locus_id=Os06g0146650;Note=Hypothetical protein.;Transcript_evidence=EU942531 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0146650-00
Chr06	irgsp1_rep	CDS	2442184	2442492	.	+	0	Parent=Os06t0146650-00
Chr06	irgsp1_rep	three_prime_UTR	2442493	2442493	.	+	.	Parent=Os06t0146650-00
Chr06	irgsp1_rep	mRNA	2446226	2447357	.	-	.	ID=Os06t0146700-01;Name=Os06t0146700-01;Locus_id=Os06g0146700;Note=Similar to CytoChrome P450 CYP86A35.;Transcript_evidence=AK106490 (DDBJ%2C Best hit);ORF_evidence=B6TMM6 (UniProt);NIAS_FLcDNA=002-105-A11;TENOR=Os06t0146700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	2447357	2447357	.	-	.	Parent=Os06t0146700-01
Chr06	irgsp1_rep	CDS	2446853	2447356	.	-	0	Parent=Os06t0146700-01
Chr06	irgsp1_rep	three_prime_UTR	2446591	2446852	.	-	.	Parent=Os06t0146700-01
Chr06	irgsp1_rep	three_prime_UTR	2446226	2446517	.	-	.	Parent=Os06t0146700-01
Chr06	irgsp1_rep	mRNA	2449205	2449822	.	-	.	ID=Os06t0146800-01;Name=Os06t0146800-01;Locus_id=Os06g0146800;Note=Conserved hypothetical protein.;Transcript_evidence=AK121050 (DDBJ%2C Best hit);ORF_evidence=B9FFF7 (UniProt);NIAS_FLcDNA=J023055G07;Expression=AK121050;TENOR=Os06t0146800-01;KEGG=Os06t0146800-01
Chr06	irgsp1_rep	five_prime_UTR	2449697	2449822	.	-	.	Parent=Os06t0146800-01
Chr06	irgsp1_rep	CDS	2449349	2449696	.	-	0	Parent=Os06t0146800-01
Chr06	irgsp1_rep	three_prime_UTR	2449205	2449348	.	-	.	Parent=Os06t0146800-01
Chr06	irgsp1_rep	mRNA	2450210	2451669	.	-	.	ID=Os06t0146900-01;Name=Os06t0146900-01;Locus_id=Os06g0146900;Note=Hypothetical protein.;Transcript_evidence=AK071352 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023094E17;Expression=AK071352;TENOR=Os06t0146900-01;KEGG=Os06t0146900-01
Chr06	irgsp1_rep	five_prime_UTR	2451548	2451669	.	-	.	Parent=Os06t0146900-01
Chr06	irgsp1_rep	CDS	2451295	2451547	.	-	0	Parent=Os06t0146900-01
Chr06	irgsp1_rep	CDS	2450643	2450665	.	-	2	Parent=Os06t0146900-01
Chr06	irgsp1_rep	three_prime_UTR	2450210	2450642	.	-	.	Parent=Os06t0146900-01
Chr06	irgsp1_rep	mRNA	2453481	2454046	.	-	.	ID=Os06t0147000-01;Name=Os06t0147000-01;Locus_id=Os06g0147000;Note=Conserved hypothetical protein.;Transcript_evidence=AK120978 (DDBJ%2C Best hit);ORF_evidence=A2Y9A6 (UniProt);NIAS_FLcDNA=J023041N20;Expression=AK120978;TENOR=Os06t0147000-01;KEGG=Os06t0147000-01
Chr06	irgsp1_rep	five_prime_UTR	2453934	2454046	.	-	.	Parent=Os06t0147000-01
Chr06	irgsp1_rep	CDS	2453577	2453933	.	-	0	Parent=Os06t0147000-01
Chr06	irgsp1_rep	three_prime_UTR	2453481	2453576	.	-	.	Parent=Os06t0147000-01
Chr06	irgsp1_rep	mRNA	2457429	2458126	.	-	.	ID=Os06t0147100-01;Name=Os06t0147100-01;Locus_id=Os06g0147100;Note=Similar to cDNA clone:J023088C01%2C full insert sequence.;Transcript_evidence=AK119696 (DDBJ%2C Best hit);ORF_evidence=B7EQF1 (UniProt);NIAS_FLcDNA=002-157-C09;Expression=AK119696;TENOR=Os06t0147100-01;KEGG=Os06t0147100-01
Chr06	irgsp1_rep	five_prime_UTR	2458005	2458126	.	-	.	Parent=Os06t0147100-01
Chr06	irgsp1_rep	CDS	2457645	2458004	.	-	0	Parent=Os06t0147100-01
Chr06	irgsp1_rep	three_prime_UTR	2457429	2457644	.	-	.	Parent=Os06t0147100-01
Chr06	irgsp1_rep	mRNA	2457431	2458031	.	-	.	ID=Os06t0147100-02;Name=Os06t0147100-02;Locus_id=Os06g0147100;Note=Conserved hypothetical protein.;Transcript_evidence=AK120518 (DDBJ%2C Best hit);ORF_evidence=XP_002437824.1 (RefSeq);NIAS_FLcDNA=J013124C19;Expression=AK120518;TENOR=Os06t0147100-02;KEGG=Os06t0147100-02
Chr06	irgsp1_rep	five_prime_UTR	2458005	2458031	.	-	.	Parent=Os06t0147100-02
Chr06	irgsp1_rep	CDS	2457645	2458004	.	-	0	Parent=Os06t0147100-02
Chr06	irgsp1_rep	three_prime_UTR	2457431	2457644	.	-	.	Parent=Os06t0147100-02
Chr06	irgsp1_rep	mRNA	2461058	2461867	.	+	.	ID=Os06t0147200-01;Name=Os06t0147200-01;Locus_id=Os06g0147200;Note=Conserved hypothetical protein.;Transcript_evidence=AK064042 (DDBJ%2C Best hit);ORF_evidence=A3AUB5 (UniProt);NIAS_FLcDNA=001-125-D02;TENOR=Os06t0147200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	2461058	2461241	.	+	.	Parent=Os06t0147200-01
Chr06	irgsp1_rep	CDS	2461242	2461383	.	+	0	Parent=Os06t0147200-01
Chr06	irgsp1_rep	CDS	2461579	2461598	.	+	2	Parent=Os06t0147200-01
Chr06	irgsp1_rep	three_prime_UTR	2461599	2461867	.	+	.	Parent=Os06t0147200-01
Chr06	irgsp1_rep	mRNA	2462234	2462587	.	+	.	ID=Os06t0147250-00;Name=Os06t0147250-00;Locus_id=Os06g0147250;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B8B2N9 (UniProt);TENOR=Os06t0147250-00;KEGG=Os06t0147250-00
Chr06	irgsp1_rep	CDS	2462234	2462587	.	+	0	Parent=Os06t0147250-00
Chr06	irgsp1_rep	mRNA	2472843	2473156	.	-	.	ID=Os06t0147275-00;Name=Os06t0147275-00;Locus_id=Os06g0147275;Note=Hypothetical protein.;Transcript_evidence=EU942531 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0147275-00
Chr06	irgsp1_rep	five_prime_UTR	2473079	2473156	.	-	.	Parent=Os06t0147275-00
Chr06	irgsp1_rep	CDS	2472845	2473078	.	-	0	Parent=Os06t0147275-00
Chr06	irgsp1_rep	three_prime_UTR	2472843	2472844	.	-	.	Parent=Os06t0147275-00
Chr06	irgsp1_rep	mRNA	2472738	2473344	.	+	.	ID=Os06t0147300-01;Name=Os06t0147300-01;Locus_id=Os06g0147300;Note=Similar to cDNA clone:J023088C01%2C full insert sequence.;Transcript_evidence=AK111114 (DDBJ%2C Best hit);ORF_evidence=B7EQF1 (UniProt);NIAS_FLcDNA=002-176-B05;Expression=AK111114;TENOR=Os06t0147300-01;KEGG=Os06t0147300-01
Chr06	irgsp1_rep	five_prime_UTR	2472738	2472812	.	+	.	Parent=Os06t0147300-01
Chr06	irgsp1_rep	CDS	2472813	2473175	.	+	0	Parent=Os06t0147300-01
Chr06	irgsp1_rep	three_prime_UTR	2473176	2473344	.	+	.	Parent=Os06t0147300-01
Chr06	irgsp1_rep	mRNA	2477593	2478394	.	-	.	ID=Os06t0147400-01;Name=Os06t0147400-01;Locus_id=Os06g0147400;Note=Conserved hypothetical protein.;Transcript_evidence=AK120956 (DDBJ%2C Best hit);ORF_evidence=A2Y9B4 (UniProt);NIAS_FLcDNA=J023039G07;Expression=AK120956;TENOR=Os06t0147400-01;KEGG=Os06t0147400-01
Chr06	irgsp1_rep	five_prime_UTR	2478333	2478394	.	-	.	Parent=Os06t0147400-01
Chr06	irgsp1_rep	CDS	2477910	2478332	.	-	0	Parent=Os06t0147400-01
Chr06	irgsp1_rep	three_prime_UTR	2477593	2477909	.	-	.	Parent=Os06t0147400-01
Chr06	irgsp1_rep	mRNA	2477847	2478425	.	+	.	ID=Os06t0147500-00;Name=Os06t0147500-00;Locus_id=Os06g0147500;Note=Conserved hypothetical protein.;Transcript_evidence=EU942531 (DDBJ);ORF_evidence=NP_001056803.1 (RefSeq);TENOR=Os06t0147500-00
Chr06	irgsp1_rep	CDS	2477847	2478425	.	+	0	Parent=Os06t0147500-00
Chr06	irgsp1_rep	mRNA	2497634	2498202	.	-	.	ID=Os06t0147600-01;Name=Os06t0147600-01;Locus_id=Os06g0147600;Note=Conserved hypothetical protein.;Transcript_evidence=AK107817 (DDBJ%2C Best hit);ORF_evidence=B8B2P6 (UniProt);NIAS_FLcDNA=002-133-F09;Expression=AK107817;TENOR=Os06t0147600-01;KEGG=Os06t0147600-01
Chr06	irgsp1_rep	five_prime_UTR	2498150	2498202	.	-	.	Parent=Os06t0147600-01
Chr06	irgsp1_rep	CDS	2497727	2498149	.	-	0	Parent=Os06t0147600-01
Chr06	irgsp1_rep	three_prime_UTR	2497634	2497726	.	-	.	Parent=Os06t0147600-01
Chr06	irgsp1_rep	mRNA	2498863	2502887	.	-	.	ID=Os06t0147800-01;Name=Os06t0147800-01;Locus_id=Os06g0147800;RAP-DB Gene Symbol Synonym(s)=OsMKK1;RAP-DB Gene Name Synonym(s)=Mitogen-activated protein kinase kinase 1;CGSNL Gene Symbol=MKK1;CGSNL Gene Name=MITOGEN-ACTIVATED PROTEIN KINASE KINASE 1;Oryzabase Gene Symbol Synonym(s)=OsMKK1%2C OsMEK2%2C MEK2;Oryzabase Gene Name Synonym(s)=MAPK kinase 1;Note=Mitogen-activated protein kinase (MAPK) kinase%2C Regulation of salt stress tolerance;Transcript_evidence=AK111598;ORF_evidence=Q5VP37;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),Protein kinase domain (IPR000719),Serine-threonine/tyrosine-protein kinase%2C catalytic domain (IPR001245),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J013094D16;Manual Curation=October 16%2C 2020;Literature_PMID=25219319;Oryzabase=8829;Expression=AK111598;TENOR=Os06t0147800-01;KEGG=Os06t0147800-01 (EC:2.7.12.2)
Chr06	irgsp1_rep	five_prime_UTR	2502777	2502887	.	-	.	Parent=Os06t0147800-01
Chr06	irgsp1_rep	CDS	2502718	2502776	.	-	0	Parent=Os06t0147800-01
Chr06	irgsp1_rep	CDS	2502490	2502574	.	-	1	Parent=Os06t0147800-01
Chr06	irgsp1_rep	CDS	2501690	2501827	.	-	0	Parent=Os06t0147800-01
Chr06	irgsp1_rep	CDS	2501267	2501492	.	-	0	Parent=Os06t0147800-01
Chr06	irgsp1_rep	CDS	2500978	2501159	.	-	2	Parent=Os06t0147800-01
Chr06	irgsp1_rep	CDS	2500667	2500872	.	-	0	Parent=Os06t0147800-01
Chr06	irgsp1_rep	CDS	2499567	2499612	.	-	1	Parent=Os06t0147800-01
Chr06	irgsp1_rep	CDS	2499371	2499464	.	-	0	Parent=Os06t0147800-01
Chr06	irgsp1_rep	CDS	2499218	2499240	.	-	2	Parent=Os06t0147800-01
Chr06	irgsp1_rep	three_prime_UTR	2498863	2499217	.	-	.	Parent=Os06t0147800-01
Chr06	irgsp1_rep	mRNA	2505623	2509040	.	-	.	ID=Os06t0148000-01;Name=Os06t0148000-01;Locus_id=Os06g0148000;Note=Conserved hypothetical protein.;Transcript_evidence=AK059790 (DDBJ%2C Best hit);ORF_evidence=B8B2P5 (UniProt);NIAS_FLcDNA=006-204-E02;Expression=AK059790;TENOR=Os06t0148000-01;KEGG=Os06t0148000-01
Chr06	irgsp1_rep	five_prime_UTR	2508907	2509040	.	-	.	Parent=Os06t0148000-01
Chr06	irgsp1_rep	CDS	2508858	2508906	.	-	0	Parent=Os06t0148000-01
Chr06	irgsp1_rep	CDS	2507555	2507655	.	-	2	Parent=Os06t0148000-01
Chr06	irgsp1_rep	CDS	2507168	2507470	.	-	0	Parent=Os06t0148000-01
Chr06	irgsp1_rep	three_prime_UTR	2507038	2507167	.	-	.	Parent=Os06t0148000-01
Chr06	irgsp1_rep	three_prime_UTR	2506368	2506449	.	-	.	Parent=Os06t0148000-01
Chr06	irgsp1_rep	three_prime_UTR	2505623	2505975	.	-	.	Parent=Os06t0148000-01
Chr06	irgsp1_rep	mRNA	2510260	2511033	.	+	.	ID=Os06t0148100-00;Name=Os06t0148100-00;Locus_id=Os06g0148100;Note=Conserved hypothetical protein.;Transcript_evidence=EU947715 (DDBJ);ORF_evidence=Q5VP34 (UniProt);TENOR=Os06t0148100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	2510260	2510289	.	+	.	Parent=Os06t0148100-00
Chr06	irgsp1_rep	CDS	2510290	2510871	.	+	0	Parent=Os06t0148100-00
Chr06	irgsp1_rep	three_prime_UTR	2510872	2511033	.	+	.	Parent=Os06t0148100-00
Chr06	irgsp1_rep	mRNA	2515766	2517632	.	+	.	ID=Os06t0148200-01;Name=Os06t0148200-01;Locus_id=Os06g0148200;CGSNL Gene Symbol=GELP74;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 74;Oryzabase Gene Symbol Synonym(s)=OsGELP74;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 74;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK109420 (DDBJ%2C Best hit),AK060175 (DDBJ%2C Best hit),AK073593 (DDBJ%2C Best hit);ORF_evidence=E4MW04 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=006-305-D07,006-312-A01,J033046C23;Oryzabase=11024;Expression=AK109420;TENOR=Os06t0148200-01;KEGG=Os06t0148200-01
Chr06	irgsp1_rep	five_prime_UTR	2515766	2515838	.	+	.	Parent=Os06t0148200-01
Chr06	irgsp1_rep	CDS	2515839	2516076	.	+	0	Parent=Os06t0148200-01
Chr06	irgsp1_rep	CDS	2516182	2516312	.	+	2	Parent=Os06t0148200-01
Chr06	irgsp1_rep	CDS	2516522	2516755	.	+	0	Parent=Os06t0148200-01
Chr06	irgsp1_rep	CDS	2516890	2517145	.	+	0	Parent=Os06t0148200-01
Chr06	irgsp1_rep	CDS	2517308	2517504	.	+	2	Parent=Os06t0148200-01
Chr06	irgsp1_rep	three_prime_UTR	2517505	2517632	.	+	.	Parent=Os06t0148200-01
Chr06	irgsp1_rep	mRNA	2517562	2517855	.	+	.	ID=Os06t0148200-02;Name=Os06t0148200-02;Locus_id=Os06g0148200;CGSNL Gene Symbol=GELP74;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 74;Oryzabase Gene Symbol Synonym(s)=OsGELP74;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 74;Note=Non-protein coding transcript.;Transcript_evidence=AK059204 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-024-A12;Oryzabase=11024;TENOR=Os06t0148200-02
Chr06	irgsp1_rep	exon	2517562	2517855	.	+	.	Parent=Os06t0148200-02
Chr06	irgsp1_rep	mRNA	2515834	2517504	.	-	.	ID=Os06t0148250-00;Name=Os06t0148250-00;Locus_id=Os06g0148250;Note=Hypothetical protein.;Transcript_evidence=tplb0026k01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0148250-00
Chr06	irgsp1_rep	five_prime_UTR	2517489	2517504	.	-	.	Parent=Os06t0148250-00
Chr06	irgsp1_rep	CDS	2517296	2517488	.	-	0	Parent=Os06t0148250-00
Chr06	irgsp1_rep	CDS	2516950	2517134	.	-	2	Parent=Os06t0148250-00
Chr06	irgsp1_rep	three_prime_UTR	2516899	2516949	.	-	.	Parent=Os06t0148250-00
Chr06	irgsp1_rep	three_prime_UTR	2516510	2516763	.	-	.	Parent=Os06t0148250-00
Chr06	irgsp1_rep	three_prime_UTR	2516189	2516303	.	-	.	Parent=Os06t0148250-00
Chr06	irgsp1_rep	three_prime_UTR	2515834	2516084	.	-	.	Parent=Os06t0148250-00
Chr06	irgsp1_rep	mRNA	2518212	2520938	.	+	.	ID=Os06t0148300-01;Name=Os06t0148300-01;Locus_id=Os06g0148300;Note=Conserved hypothetical protein.;Transcript_evidence=AK070582 (DDBJ%2C Best hit);ORF_evidence=A3B8E3 (UniProt);NIAS_FLcDNA=J023061B22;Expression=AK070582;TENOR=Os06t0148300-01;KEGG=Os06t0148300-01
Chr06	irgsp1_rep	five_prime_UTR	2518212	2518583	.	+	.	Parent=Os06t0148300-01
Chr06	irgsp1_rep	five_prime_UTR	2519597	2519729	.	+	.	Parent=Os06t0148300-01
Chr06	irgsp1_rep	CDS	2519730	2520236	.	+	0	Parent=Os06t0148300-01
Chr06	irgsp1_rep	three_prime_UTR	2520237	2520938	.	+	.	Parent=Os06t0148300-01
Chr06	irgsp1_rep	mRNA	2527014	2528304	.	+	.	ID=Os06t0148500-01;Name=Os06t0148500-01;Locus_id=Os06g0148500;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK109249 (DDBJ%2C Best hit);ORF_evidence=Q01L13 (UniProt);NIAS_FLcDNA=002-156-H04;Expression=AK109249;TENOR=Os06t0148500-01;KEGG=Os06t0148500-01
Chr06	irgsp1_rep	five_prime_UTR	2527014	2527422	.	+	.	Parent=Os06t0148500-01
Chr06	irgsp1_rep	five_prime_UTR	2527958	2527960	.	+	.	Parent=Os06t0148500-01
Chr06	irgsp1_rep	CDS	2527961	2528206	.	+	0	Parent=Os06t0148500-01
Chr06	irgsp1_rep	three_prime_UTR	2528207	2528304	.	+	.	Parent=Os06t0148500-01
Chr06	irgsp1_rep	mRNA	2529103	2531645	.	+	.	ID=Os06t0148600-01;Name=Os06t0148600-01;Locus_id=Os06g0148600;Oryzabase Gene Symbol Synonym(s)=OsFbox292%2C Os_F0618;Oryzabase Gene Name Synonym(s)=F-box protein 292;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK063946 (DDBJ%2C Best hit),AK121786 (DDBJ%2C Best hit);ORF_evidence=A2Y9C9 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174);NIAS_FLcDNA=001-123-E10,J033094B14;Oryzabase=17072;TENOR=Os06t0148600-01
Chr06	irgsp1_rep	five_prime_UTR	2529103	2529343	.	+	.	Parent=Os06t0148600-01
Chr06	irgsp1_rep	five_prime_UTR	2530270	2530283	.	+	.	Parent=Os06t0148600-01
Chr06	irgsp1_rep	CDS	2530284	2531465	.	+	0	Parent=Os06t0148600-01
Chr06	irgsp1_rep	three_prime_UTR	2531466	2531645	.	+	.	Parent=Os06t0148600-01
Chr06	irgsp1_rep	mRNA	2532618	2534590	.	+	.	ID=Os06t0148700-01;Name=Os06t0148700-01;Locus_id=Os06g0148700;Oryzabase Gene Symbol Synonym(s)=OsFbox293%2C Os_F0585;Oryzabase Gene Name Synonym(s)=F-box protein 293;Note=Conserved hypothetical protein.;Transcript_evidence=AK064526 (DDBJ%2C Best hit);ORF_evidence=B9FRH7 (UniProt);NIAS_FLcDNA=002-111-G10;Oryzabase=17073;TENOR=Os06t0148700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	2532618	2532619	.	+	.	Parent=Os06t0148700-01
Chr06	irgsp1_rep	CDS	2532620	2532668	.	+	0	Parent=Os06t0148700-01
Chr06	irgsp1_rep	CDS	2533240	2533899	.	+	2	Parent=Os06t0148700-01
Chr06	irgsp1_rep	CDS	2533981	2534210	.	+	2	Parent=Os06t0148700-01
Chr06	irgsp1_rep	three_prime_UTR	2534211	2534590	.	+	.	Parent=Os06t0148700-01
Chr06	irgsp1_rep	mRNA	2537903	2539468	.	+	.	ID=Os06t0148900-01;Name=Os06t0148900-01;Locus_id=Os06g0148900;Oryzabase Gene Symbol Synonym(s)=OsFbox295%2C Os_F0299;Oryzabase Gene Name Synonym(s)=F-box protein 295;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK107542 (DDBJ%2C Best hit);ORF_evidence=A3B8E6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Protein of unknown function DUF295 (IPR005174),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-129-H10;Oryzabase=17075;Expression=AK107542;TENOR=Os06t0148900-01;KEGG=Os06t0148900-01
Chr06	irgsp1_rep	five_prime_UTR	2537903	2538029	.	+	.	Parent=Os06t0148900-01
Chr06	irgsp1_rep	CDS	2538030	2538514	.	+	0	Parent=Os06t0148900-01
Chr06	irgsp1_rep	CDS	2538668	2539289	.	+	1	Parent=Os06t0148900-01
Chr06	irgsp1_rep	three_prime_UTR	2539290	2539468	.	+	.	Parent=Os06t0148900-01
Chr06	irgsp1_rep	mRNA	2546952	2549251	.	+	.	ID=Os06t0149100-01;Name=Os06t0149100-01;Locus_id=Os06g0149100;CGSNL Gene Symbol=GELP75;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 75;Oryzabase Gene Symbol Synonym(s)=OsGELP75%2C OsGELP75a%2C OsGELP75b%2C OsGELP75c;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 75;Note=Similar to mRNA%2C clone: RTFL01-05-E01.;Transcript_evidence=AK067418 (DDBJ%2C Best hit),AK099064 (DDBJ%2C Best hit);ORF_evidence=E4MW04 (UniProt);NIAS_FLcDNA=J013102M08,J013157L13;Oryzabase=11025;TENOR=Os06t0149100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	2546952	2547359	.	+	.	Parent=Os06t0149100-01
Chr06	irgsp1_rep	CDS	2547360	2547500	.	+	0	Parent=Os06t0149100-01
Chr06	irgsp1_rep	CDS	2547980	2548213	.	+	0	Parent=Os06t0149100-01
Chr06	irgsp1_rep	CDS	2548346	2548465	.	+	0	Parent=Os06t0149100-01
Chr06	irgsp1_rep	three_prime_UTR	2548466	2548590	.	+	.	Parent=Os06t0149100-01
Chr06	irgsp1_rep	three_prime_UTR	2548691	2549251	.	+	.	Parent=Os06t0149100-01
Chr06	irgsp1_rep	mRNA	2547088	2548850	.	-	.	ID=Os06t0149133-00;Name=Os06t0149133-00;Locus_id=Os06g0149133;Note=Hypothetical protein.;Transcript_evidence=tplb0026k01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0149133-00
Chr06	irgsp1_rep	five_prime_UTR	2548670	2548850	.	-	.	Parent=Os06t0149133-00
Chr06	irgsp1_rep	five_prime_UTR	2548547	2548578	.	-	.	Parent=Os06t0149133-00
Chr06	irgsp1_rep	CDS	2548312	2548546	.	-	0	Parent=Os06t0149133-00
Chr06	irgsp1_rep	CDS	2547956	2548194	.	-	2	Parent=Os06t0149133-00
Chr06	irgsp1_rep	three_prime_UTR	2547950	2547955	.	-	.	Parent=Os06t0149133-00
Chr06	irgsp1_rep	three_prime_UTR	2547377	2547472	.	-	.	Parent=Os06t0149133-00
Chr06	irgsp1_rep	three_prime_UTR	2547088	2547275	.	-	.	Parent=Os06t0149133-00
Chr06	irgsp1_rep	mRNA	2551082	2555023	.	+	.	ID=Os06t0149166-00;Name=Os06t0149166-00;Locus_id=Os06g0149166;Note=Hypothetical protein.;Transcript_evidence=tplb0042h22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0149166-00
Chr06	irgsp1_rep	five_prime_UTR	2551082	2552392	.	+	.	Parent=Os06t0149166-00
Chr06	irgsp1_rep	five_prime_UTR	2552958	2553132	.	+	.	Parent=Os06t0149166-00
Chr06	irgsp1_rep	five_prime_UTR	2554058	2554234	.	+	.	Parent=Os06t0149166-00
Chr06	irgsp1_rep	CDS	2554235	2554271	.	+	0	Parent=Os06t0149166-00
Chr06	irgsp1_rep	CDS	2554432	2554638	.	+	2	Parent=Os06t0149166-00
Chr06	irgsp1_rep	CDS	2554756	2554940	.	+	2	Parent=Os06t0149166-00
Chr06	irgsp1_rep	three_prime_UTR	2554941	2555023	.	+	.	Parent=Os06t0149166-00
Chr06	irgsp1_rep	mRNA	2554746	2554991	.	-	.	ID=Os06t0149200-00;Name=Os06t0149200-00;Locus_id=Os06g0149200;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3B8E9 (UniProt);TENOR=Os06t0149200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	2554746	2554991	.	-	0	Parent=Os06t0149200-00
Chr06	irgsp1_rep	mRNA	2555635	2557663	.	-	.	ID=Os06t0149300-01;Name=Os06t0149300-01;Locus_id=Os06g0149300;Note=Hypothetical protein.;Transcript_evidence=AK121087 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023065F21;TENOR=Os06t0149300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	2557662	2557663	.	-	.	Parent=Os06t0149300-01
Chr06	irgsp1_rep	CDS	2557413	2557661	.	-	0	Parent=Os06t0149300-01
Chr06	irgsp1_rep	CDS	2555912	2556076	.	-	0	Parent=Os06t0149300-01
Chr06	irgsp1_rep	three_prime_UTR	2555635	2555911	.	-	.	Parent=Os06t0149300-01
Chr06	irgsp1_rep	mRNA	2558017	2562216	.	+	.	ID=Os06t0149400-01;Name=Os06t0149400-01;Locus_id=Os06g0149400;Oryzabase Gene Symbol Synonym(s)=Orysa%3BNAP1%3B1%2C OsNAP1_L1;Oryzabase Gene Name Synonym(s)=nucleosome assembly protein 1-like protein 1%2C Nucleosome assembly protein 1%3B1%2C NAP1-like protein 1;Note=Similar to Chitinase A.;Transcript_evidence=AK071177 (DDBJ%2C Best hit);ORF_evidence=Q70Z21 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleus (GO:0005634);InterPro=Nucleosome assembly protein (NAP) (IPR002164);NIAS_FLcDNA=J023084M16;Oryzabase=14083;Expression=AK071177;TENOR=Os06t0149400-01;KEGG=Os06t0149400-01
Chr06	irgsp1_rep	five_prime_UTR	2558017	2558134	.	+	.	Parent=Os06t0149400-01
Chr06	irgsp1_rep	CDS	2558135	2558201	.	+	0	Parent=Os06t0149400-01
Chr06	irgsp1_rep	CDS	2558280	2558323	.	+	2	Parent=Os06t0149400-01
Chr06	irgsp1_rep	CDS	2558441	2558536	.	+	0	Parent=Os06t0149400-01
Chr06	irgsp1_rep	CDS	2560267	2560359	.	+	0	Parent=Os06t0149400-01
Chr06	irgsp1_rep	CDS	2560458	2560548	.	+	0	Parent=Os06t0149400-01
Chr06	irgsp1_rep	CDS	2560625	2560686	.	+	2	Parent=Os06t0149400-01
Chr06	irgsp1_rep	CDS	2560762	2560946	.	+	0	Parent=Os06t0149400-01
Chr06	irgsp1_rep	CDS	2561030	2561207	.	+	1	Parent=Os06t0149400-01
Chr06	irgsp1_rep	CDS	2561301	2561344	.	+	0	Parent=Os06t0149400-01
Chr06	irgsp1_rep	CDS	2561448	2561643	.	+	1	Parent=Os06t0149400-01
Chr06	irgsp1_rep	CDS	2561736	2561753	.	+	0	Parent=Os06t0149400-01
Chr06	irgsp1_rep	CDS	2561847	2561909	.	+	0	Parent=Os06t0149400-01
Chr06	irgsp1_rep	three_prime_UTR	2561910	2562216	.	+	.	Parent=Os06t0149400-01
Chr06	irgsp1_rep	mRNA	2558439	2561979	.	-	.	ID=Os06t0149450-00;Name=Os06t0149450-00;Locus_id=Os06g0149450;Note=Hypothetical gene.;Transcript_evidence=BT085039 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0149450-00
Chr06	irgsp1_rep	five_prime_UTR	2561835	2561979	.	-	.	Parent=Os06t0149450-00
Chr06	irgsp1_rep	five_prime_UTR	2561437	2561714	.	-	.	Parent=Os06t0149450-00
Chr06	irgsp1_rep	five_prime_UTR	2561234	2561238	.	-	.	Parent=Os06t0149450-00
Chr06	irgsp1_rep	CDS	2561029	2561233	.	-	0	Parent=Os06t0149450-00
Chr06	irgsp1_rep	CDS	2560760	2560945	.	-	2	Parent=Os06t0149450-00
Chr06	irgsp1_rep	CDS	2560624	2560684	.	-	2	Parent=Os06t0149450-00
Chr06	irgsp1_rep	CDS	2560467	2560547	.	-	1	Parent=Os06t0149450-00
Chr06	irgsp1_rep	CDS	2560261	2560364	.	-	1	Parent=Os06t0149450-00
Chr06	irgsp1_rep	CDS	2558502	2558530	.	-	2	Parent=Os06t0149450-00
Chr06	irgsp1_rep	three_prime_UTR	2558439	2558501	.	-	.	Parent=Os06t0149450-00
Chr06	irgsp1_rep	mRNA	2565186	2567638	.	+	.	ID=Os06t0149500-01;Name=Os06t0149500-01;Locus_id=Os06g0149500;Note=Conserved hypothetical protein.;Transcript_evidence=AK102827 (DDBJ%2C Best hit);ORF_evidence=B8B2R5 (UniProt);NIAS_FLcDNA=J033109D03;Expression=AK102827;TENOR=Os06t0149500-01;KEGG=Os06t0149500-01
Chr06	irgsp1_rep	five_prime_UTR	2565186	2565258	.	+	.	Parent=Os06t0149500-01
Chr06	irgsp1_rep	CDS	2565259	2565574	.	+	0	Parent=Os06t0149500-01
Chr06	irgsp1_rep	CDS	2567242	2567279	.	+	2	Parent=Os06t0149500-01
Chr06	irgsp1_rep	three_prime_UTR	2567280	2567638	.	+	.	Parent=Os06t0149500-01
Chr06	irgsp1_rep	mRNA	2574179	2576676	.	+	.	ID=Os06t0149700-00;Name=Os06t0149700-00;Locus_id=Os06g0149700;Note=Cysteine synthase (EC 4.2.99.8).;Transcript_evidence=AF073698 (DDBJ%2C Best hit);ORF_evidence=B6UB52 (UniProt);GO=Biological Process: cysteine biosynthetic process from serine (GO:0006535),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: cysteine synthase activity (GO:0004124),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent enzyme%2C beta subunit (IPR001926),Cysteine synthase K/M (IPR005856),Cysteine synthase A (IPR005859);Expression=AF073698;TENOR=Os06t0149700-00;KEGG=Os06t0149700-00 (EC:4.2.1.22%2C EC:4.2.99.8)
Chr06	irgsp1_rep	five_prime_UTR	2574179	2574248	.	+	.	Parent=Os06t0149700-00
Chr06	irgsp1_rep	CDS	2574249	2574332	.	+	0	Parent=Os06t0149700-00
Chr06	irgsp1_rep	CDS	2574517	2574644	.	+	0	Parent=Os06t0149700-00
Chr06	irgsp1_rep	CDS	2574777	2574979	.	+	1	Parent=Os06t0149700-00
Chr06	irgsp1_rep	CDS	2575137	2575262	.	+	2	Parent=Os06t0149700-00
Chr06	irgsp1_rep	CDS	2575530	2575688	.	+	2	Parent=Os06t0149700-00
Chr06	irgsp1_rep	CDS	2575865	2576058	.	+	2	Parent=Os06t0149700-00
Chr06	irgsp1_rep	CDS	2576259	2576384	.	+	0	Parent=Os06t0149700-00
Chr06	irgsp1_rep	three_prime_UTR	2576385	2576429	.	+	.	Parent=Os06t0149700-00
Chr06	irgsp1_rep	three_prime_UTR	2576546	2576676	.	+	.	Parent=Os06t0149700-00
Chr06	irgsp1_rep	mRNA	2574232	2576716	.	-	.	ID=Os06t0149801-01;Name=Os06t0149801-01;Locus_id=Os06g0149801;Note=Hypothetical gene.;Transcript_evidence=AK243242 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100046J06;TENOR=Os06t0149801-01;KEGG=Os06t0149801-01
Chr06	irgsp1_rep	five_prime_UTR	2576546	2576716	.	-	.	Parent=Os06t0149801-01
Chr06	irgsp1_rep	five_prime_UTR	2576375	2576429	.	-	.	Parent=Os06t0149801-01
Chr06	irgsp1_rep	CDS	2576259	2576374	.	-	0	Parent=Os06t0149801-01
Chr06	irgsp1_rep	CDS	2575890	2576058	.	-	1	Parent=Os06t0149801-01
Chr06	irgsp1_rep	three_prime_UTR	2575865	2575889	.	-	.	Parent=Os06t0149801-01
Chr06	irgsp1_rep	three_prime_UTR	2575530	2575688	.	-	.	Parent=Os06t0149801-01
Chr06	irgsp1_rep	three_prime_UTR	2575137	2575262	.	-	.	Parent=Os06t0149801-01
Chr06	irgsp1_rep	three_prime_UTR	2574777	2574979	.	-	.	Parent=Os06t0149801-01
Chr06	irgsp1_rep	three_prime_UTR	2574517	2574644	.	-	.	Parent=Os06t0149801-01
Chr06	irgsp1_rep	three_prime_UTR	2574232	2574332	.	-	.	Parent=Os06t0149801-01
Chr06	irgsp1_rep	mRNA	2579089	2581720	.	+	.	ID=Os06t0149900-01;Name=Os06t0149900-01;Locus_id=Os06g0149900;Note=Similar to Cysteine synthase (EC 4.2.99.8).;Transcript_evidence=AK072457 (DDBJ%2C Best hit);ORF_evidence=B6UB52 (UniProt);GO=Biological Process: cysteine biosynthetic process from serine (GO:0006535),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: cysteine synthase activity (GO:0004124),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent enzyme%2C beta subunit (IPR001926),Cysteine synthase K/M (IPR005856),Cysteine synthase A (IPR005859);NIAS_FLcDNA=J023123O18;Expression=AK072457;TENOR=Os06t0149900-01;KEGG=Os06t0149900-01 (EC:4.2.1.22%2C EC:4.2.99.8)
Chr06	irgsp1_rep	five_prime_UTR	2579089	2579186	.	+	.	Parent=Os06t0149900-01
Chr06	irgsp1_rep	CDS	2579187	2579294	.	+	0	Parent=Os06t0149900-01
Chr06	irgsp1_rep	CDS	2579486	2579613	.	+	0	Parent=Os06t0149900-01
Chr06	irgsp1_rep	CDS	2579958	2580160	.	+	1	Parent=Os06t0149900-01
Chr06	irgsp1_rep	CDS	2580327	2580452	.	+	2	Parent=Os06t0149900-01
Chr06	irgsp1_rep	CDS	2580750	2580908	.	+	2	Parent=Os06t0149900-01
Chr06	irgsp1_rep	CDS	2581066	2581259	.	+	2	Parent=Os06t0149900-01
Chr06	irgsp1_rep	CDS	2581390	2581515	.	+	0	Parent=Os06t0149900-01
Chr06	irgsp1_rep	three_prime_UTR	2581516	2581720	.	+	.	Parent=Os06t0149900-01
Chr06	irgsp1_rep	mRNA	2584171	2586156	.	-	.	ID=Os06t0150100-01;Name=Os06t0150100-01;Locus_id=Os06g0150100;Note=Conserved hypothetical protein.;Transcript_evidence=AK068890 (DDBJ%2C Best hit);ORF_evidence=B9FRI3 (UniProt);NIAS_FLcDNA=J023002O16;Expression=AK068890;TENOR=Os06t0150100-01;KEGG=Os06t0150100-01
Chr06	irgsp1_rep	five_prime_UTR	2586107	2586156	.	-	.	Parent=Os06t0150100-01
Chr06	irgsp1_rep	CDS	2585768	2586106	.	-	0	Parent=Os06t0150100-01
Chr06	irgsp1_rep	CDS	2585277	2585438	.	-	0	Parent=Os06t0150100-01
Chr06	irgsp1_rep	CDS	2584304	2584660	.	-	0	Parent=Os06t0150100-01
Chr06	irgsp1_rep	three_prime_UTR	2584171	2584303	.	-	.	Parent=Os06t0150100-01
Chr06	irgsp1_rep	mRNA	2587930	2588896	.	-	.	ID=Os06t0150300-01;Name=Os06t0150300-01;Locus_id=Os06g0150300;Note=Conserved hypothetical protein.;Transcript_evidence=AK072773 (DDBJ%2C Best hit);ORF_evidence=B8B313 (UniProt);NIAS_FLcDNA=J023138L23;Expression=AK072773;TENOR=Os06t0150300-01;KEGG=Os06t0150300-01
Chr06	irgsp1_rep	five_prime_UTR	2588783	2588896	.	-	.	Parent=Os06t0150300-01
Chr06	irgsp1_rep	CDS	2588120	2588782	.	-	0	Parent=Os06t0150300-01
Chr06	irgsp1_rep	three_prime_UTR	2587930	2588119	.	-	.	Parent=Os06t0150300-01
Chr06	irgsp1_rep	mRNA	2589059	2592248	.	-	.	ID=Os06t0150400-01;Name=Os06t0150400-01;Locus_id=Os06g0150400;Note=Conserved hypothetical protein.;Transcript_evidence=AK067407 (DDBJ%2C Best hit);ORF_evidence=B8B314 (UniProt);NIAS_FLcDNA=J013100C15;Expression=AK067407;TENOR=Os06t0150400-01;KEGG=Os06t0150400-01
Chr06	irgsp1_rep	five_prime_UTR	2592200	2592248	.	-	.	Parent=Os06t0150400-01
Chr06	irgsp1_rep	CDS	2591972	2592199	.	-	0	Parent=Os06t0150400-01
Chr06	irgsp1_rep	CDS	2591776	2591886	.	-	0	Parent=Os06t0150400-01
Chr06	irgsp1_rep	CDS	2591039	2591107	.	-	0	Parent=Os06t0150400-01
Chr06	irgsp1_rep	CDS	2590592	2590723	.	-	0	Parent=Os06t0150400-01
Chr06	irgsp1_rep	CDS	2589819	2589896	.	-	0	Parent=Os06t0150400-01
Chr06	irgsp1_rep	CDS	2589620	2589745	.	-	0	Parent=Os06t0150400-01
Chr06	irgsp1_rep	CDS	2589364	2589540	.	-	0	Parent=Os06t0150400-01
Chr06	irgsp1_rep	three_prime_UTR	2589059	2589363	.	-	.	Parent=Os06t0150400-01
Chr06	irgsp1_rep	mRNA	2592555	2594286	.	-	.	ID=Os06t0150500-01;Name=Os06t0150500-01;Locus_id=Os06g0150500;Note=Inorganic pyrophosphatase domain containing protein.;Transcript_evidence=AK106314 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-101-D09;Expression=AK106314;TENOR=Os06t0150500-01;KEGG=Os06t0150500-01
Chr06	irgsp1_rep	five_prime_UTR	2594279	2594286	.	-	.	Parent=Os06t0150500-01
Chr06	irgsp1_rep	CDS	2592875	2594278	.	-	0	Parent=Os06t0150500-01
Chr06	irgsp1_rep	three_prime_UTR	2592555	2592874	.	-	.	Parent=Os06t0150500-01
Chr06	irgsp1_rep	mRNA	2592800	2594427	.	+	.	ID=Os06t0150600-01;Name=Os06t0150600-01;Locus_id=Os06g0150600;Note=Transferase family protein.;Transcript_evidence=AK063346 (DDBJ%2C Best hit);ORF_evidence=B6SXN9 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=001-114-B08;Expression=AK063346;TENOR=Os06t0150600-01;KEGG=Os06t0150600-01
Chr06	irgsp1_rep	five_prime_UTR	2592800	2592868	.	+	.	Parent=Os06t0150600-01
Chr06	irgsp1_rep	CDS	2592869	2594293	.	+	0	Parent=Os06t0150600-01
Chr06	irgsp1_rep	three_prime_UTR	2594294	2594427	.	+	.	Parent=Os06t0150600-01
Chr06	irgsp1_rep	mRNA	2633731	2635209	.	+	.	ID=Os06t0151025-00;Name=Os06t0151025-00;Locus_id=Os06g0151025;Note=Hypothetical protein.;Transcript_evidence=tplb0048e05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0151025-00
Chr06	irgsp1_rep	five_prime_UTR	2633731	2634678	.	+	.	Parent=Os06t0151025-00
Chr06	irgsp1_rep	CDS	2634679	2635209	.	+	0	Parent=Os06t0151025-00
Chr06	irgsp1_rep	mRNA	2633736	2635234	.	-	.	ID=Os06t0151100-00;Name=Os06t0151100-00;Locus_id=Os06g0151100;Note=Similar to Transferase.;Transcript_evidence=AK372585 (DDBJ);ORF_evidence=B6SXN9 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os06t0151100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	2635177	2635234	.	-	.	Parent=Os06t0151100-00
Chr06	irgsp1_rep	CDS	2633740	2635176	.	-	0	Parent=Os06t0151100-00
Chr06	irgsp1_rep	three_prime_UTR	2633736	2633739	.	-	.	Parent=Os06t0151100-00
Chr06	irgsp1_rep	mRNA	2635908	2641269	.	-	.	ID=Os06t0151200-01;Name=Os06t0151200-01;Locus_id=Os06g0151200;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK068636 (DDBJ%2C Best hit);ORF_evidence=B9FRI6 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013157K21;Expression=AK068636;TENOR=Os06t0151200-01;KEGG=Os06t0151200-01
Chr06	irgsp1_rep	five_prime_UTR	2641127	2641269	.	-	.	Parent=Os06t0151200-01
Chr06	irgsp1_rep	CDS	2640914	2641126	.	-	0	Parent=Os06t0151200-01
Chr06	irgsp1_rep	CDS	2640666	2640728	.	-	0	Parent=Os06t0151200-01
Chr06	irgsp1_rep	CDS	2639436	2639514	.	-	0	Parent=Os06t0151200-01
Chr06	irgsp1_rep	CDS	2639183	2639311	.	-	2	Parent=Os06t0151200-01
Chr06	irgsp1_rep	CDS	2638591	2638669	.	-	2	Parent=Os06t0151200-01
Chr06	irgsp1_rep	CDS	2638391	2638439	.	-	1	Parent=Os06t0151200-01
Chr06	irgsp1_rep	CDS	2637839	2637945	.	-	0	Parent=Os06t0151200-01
Chr06	irgsp1_rep	CDS	2637663	2637732	.	-	1	Parent=Os06t0151200-01
Chr06	irgsp1_rep	CDS	2636979	2637061	.	-	0	Parent=Os06t0151200-01
Chr06	irgsp1_rep	CDS	2636292	2636322	.	-	1	Parent=Os06t0151200-01
Chr06	irgsp1_rep	three_prime_UTR	2635908	2636291	.	-	.	Parent=Os06t0151200-01
Chr06	irgsp1_rep	mRNA	2642359	2645172	.	-	.	ID=Os06t0151300-01;Name=Os06t0151300-01;Locus_id=Os06g0151300;Note=Sybindin-like protein family protein.;Transcript_evidence=AK241792 (DDBJ%2C Best hit);ORF_evidence=B6U8Z1 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888),Cellular Component: cis-Golgi network (GO:0005801);InterPro=Sybindin-like protein (IPR007233),Longin-like (IPR011012);NIAS_FLcDNA=J065208C20;TENOR=Os06t0151300-01;KEGG=Os06t0151300-01
Chr06	irgsp1_rep	five_prime_UTR	2644248	2645172	.	-	.	Parent=Os06t0151300-01
Chr06	irgsp1_rep	CDS	2644182	2644247	.	-	0	Parent=Os06t0151300-01
Chr06	irgsp1_rep	CDS	2643934	2644102	.	-	0	Parent=Os06t0151300-01
Chr06	irgsp1_rep	CDS	2642552	2642748	.	-	2	Parent=Os06t0151300-01
Chr06	irgsp1_rep	three_prime_UTR	2642359	2642551	.	-	.	Parent=Os06t0151300-01
Chr06	irgsp1_rep	mRNA	2644904	2646001	.	+	.	ID=Os06t0151401-01;Name=Os06t0151401-01;Locus_id=Os06g0151401;Note=Hypothetical gene.;Transcript_evidence=AK288584 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090049O04;TENOR=Os06t0151401-01;KEGG=Os06t0151401-01
Chr06	irgsp1_rep	five_prime_UTR	2644904	2645234	.	+	.	Parent=Os06t0151401-01
Chr06	irgsp1_rep	CDS	2645235	2645411	.	+	0	Parent=Os06t0151401-01
Chr06	irgsp1_rep	CDS	2645752	2645823	.	+	0	Parent=Os06t0151401-01
Chr06	irgsp1_rep	three_prime_UTR	2645824	2646001	.	+	.	Parent=Os06t0151401-01
Chr06	irgsp1_rep	mRNA	2652069	2661302	.	+	.	ID=Os06t0151600-01;Name=Os06t0151600-01;Locus_id=Os06g0151600;CGSNL Gene Symbol=RADA;CGSNL Gene Name=DNA REPAIR PROTEIN RADA;Oryzabase Gene Symbol Synonym(s)=OsRADA%2C OsRadA%2C OsLonP2%2C LONP2;Oryzabase Gene Name Synonym(s)=DNA repair protein RADA%2C RadA-like protein%2C Lon protease 2;Note=DNA repair protein RadA family protein.;Transcript_evidence=AK102866 (DDBJ%2C Best hit);ORF_evidence=NP_199845.3 (RefSeq);GO=Biological Process: DNA repair (GO:0006281),Biological Process: proteolysis (GO:0006508),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: damaged DNA binding (GO:0003684),Molecular Function: ATP-dependent peptidase activity (GO:0004176),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),DNA repair protein RadA (IPR004504),Peptidase S16%2C Lon C-terminal (IPR008269),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=J033111L21;Oryzabase=6792;Expression=AK102866;TENOR=Os06t0151600-01;KEGG=Os06t0151600-01
Chr06	irgsp1_rep	five_prime_UTR	2652069	2652199	.	+	.	Parent=Os06t0151600-01
Chr06	irgsp1_rep	CDS	2652200	2652870	.	+	0	Parent=Os06t0151600-01
Chr06	irgsp1_rep	CDS	2653111	2653166	.	+	1	Parent=Os06t0151600-01
Chr06	irgsp1_rep	CDS	2653824	2653882	.	+	2	Parent=Os06t0151600-01
Chr06	irgsp1_rep	CDS	2654102	2654173	.	+	0	Parent=Os06t0151600-01
Chr06	irgsp1_rep	CDS	2654364	2654447	.	+	0	Parent=Os06t0151600-01
Chr06	irgsp1_rep	CDS	2655530	2655637	.	+	0	Parent=Os06t0151600-01
Chr06	irgsp1_rep	CDS	2656551	2656613	.	+	0	Parent=Os06t0151600-01
Chr06	irgsp1_rep	CDS	2656741	2656821	.	+	0	Parent=Os06t0151600-01
Chr06	irgsp1_rep	CDS	2657364	2657429	.	+	0	Parent=Os06t0151600-01
Chr06	irgsp1_rep	CDS	2658097	2658252	.	+	0	Parent=Os06t0151600-01
Chr06	irgsp1_rep	CDS	2658761	2658838	.	+	0	Parent=Os06t0151600-01
Chr06	irgsp1_rep	CDS	2659470	2659508	.	+	0	Parent=Os06t0151600-01
Chr06	irgsp1_rep	CDS	2659681	2659763	.	+	0	Parent=Os06t0151600-01
Chr06	irgsp1_rep	CDS	2660236	2660308	.	+	1	Parent=Os06t0151600-01
Chr06	irgsp1_rep	CDS	2660850	2661020	.	+	0	Parent=Os06t0151600-01
Chr06	irgsp1_rep	three_prime_UTR	2661021	2661302	.	+	.	Parent=Os06t0151600-01
Chr06	irgsp1_rep	mRNA	2652169	2661295	.	+	.	ID=Os06t0151600-02;Name=Os06t0151600-02;Locus_id=Os06g0151600;CGSNL Gene Symbol=RADA;CGSNL Gene Name=DNA REPAIR PROTEIN RADA;Oryzabase Gene Symbol Synonym(s)=OsRADA%2C OsRadA%2C OsLonP2%2C LONP2;Oryzabase Gene Name Synonym(s)=DNA repair protein RADA%2C RadA-like protein%2C Lon protease 2;Note=Similar to predicted protein.;Transcript_evidence=AK067616 (DDBJ%2C Best hit);ORF_evidence=NP_199845.3 (RefSeq);GO=Biological Process: DNA repair (GO:0006281),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: damaged DNA binding (GO:0003684),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),DNA repair protein RadA (IPR004504);NIAS_FLcDNA=J013110F04;Oryzabase=6792;Expression=AK067616;TENOR=Os06t0151600-02;KEGG=Os06t0151600-02
Chr06	irgsp1_rep	five_prime_UTR	2652169	2652199	.	+	.	Parent=Os06t0151600-02
Chr06	irgsp1_rep	CDS	2652200	2652870	.	+	0	Parent=Os06t0151600-02
Chr06	irgsp1_rep	CDS	2653111	2653166	.	+	1	Parent=Os06t0151600-02
Chr06	irgsp1_rep	CDS	2653824	2653882	.	+	2	Parent=Os06t0151600-02
Chr06	irgsp1_rep	CDS	2654102	2654173	.	+	0	Parent=Os06t0151600-02
Chr06	irgsp1_rep	CDS	2654364	2654447	.	+	0	Parent=Os06t0151600-02
Chr06	irgsp1_rep	CDS	2655530	2655637	.	+	0	Parent=Os06t0151600-02
Chr06	irgsp1_rep	CDS	2656551	2656613	.	+	0	Parent=Os06t0151600-02
Chr06	irgsp1_rep	CDS	2656741	2656821	.	+	0	Parent=Os06t0151600-02
Chr06	irgsp1_rep	CDS	2657364	2657429	.	+	0	Parent=Os06t0151600-02
Chr06	irgsp1_rep	CDS	2658119	2658142	.	+	0	Parent=Os06t0151600-02
Chr06	irgsp1_rep	three_prime_UTR	2658143	2658252	.	+	.	Parent=Os06t0151600-02
Chr06	irgsp1_rep	three_prime_UTR	2658761	2659508	.	+	.	Parent=Os06t0151600-02
Chr06	irgsp1_rep	three_prime_UTR	2659681	2659763	.	+	.	Parent=Os06t0151600-02
Chr06	irgsp1_rep	three_prime_UTR	2660236	2660308	.	+	.	Parent=Os06t0151600-02
Chr06	irgsp1_rep	three_prime_UTR	2660850	2661295	.	+	.	Parent=Os06t0151600-02
Chr06	irgsp1_rep	mRNA	2661319	2663278	.	-	.	ID=Os06t0151700-01;Name=Os06t0151700-01;Locus_id=Os06g0151700;CGSNL Gene Symbol=RLCK196;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 196;Oryzabase Gene Symbol Synonym(s)=OsRLCK196;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 196;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK106925 (DDBJ%2C Best hit);ORF_evidence=Q2QQC1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-119-B09;Oryzabase=18894;Expression=AK106925;TENOR=Os06t0151700-01;KEGG=Os06t0151700-01
Chr06	irgsp1_rep	five_prime_UTR	2663269	2663278	.	-	.	Parent=Os06t0151700-01
Chr06	irgsp1_rep	CDS	2662693	2663268	.	-	0	Parent=Os06t0151700-01
Chr06	irgsp1_rep	CDS	2661577	2662599	.	-	0	Parent=Os06t0151700-01
Chr06	irgsp1_rep	three_prime_UTR	2661319	2661576	.	-	.	Parent=Os06t0151700-01
Chr06	irgsp1_rep	mRNA	2661517	2663464	.	+	.	ID=Os06t0151800-01;Name=Os06t0151800-01;Locus_id=Os06g0151800;Note=Hypothetical protein.;Transcript_evidence=AK109679 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-145-C06;Expression=AK109679;TENOR=Os06t0151800-01;KEGG=Os06t0151800-01
Chr06	irgsp1_rep	five_prime_UTR	2661517	2661616	.	+	.	Parent=Os06t0151800-01
Chr06	irgsp1_rep	CDS	2661617	2661904	.	+	0	Parent=Os06t0151800-01
Chr06	irgsp1_rep	three_prime_UTR	2661905	2663464	.	+	.	Parent=Os06t0151800-01
Chr06	irgsp1_rep	mRNA	2678186	2678412	.	-	.	ID=Os06t0151850-00;Name=Os06t0151850-00;Locus_id=Os06g0151850;Note=Similar to predicted protein.;Transcript_evidence=EU948644 (DDBJ);ORF_evidence=XP_001779700.1 (RefSeq);TENOR=Os06t0151850-00;KEGG=Os06t0151850-00
Chr06	irgsp1_rep	CDS	2678188	2678412	.	-	0	Parent=Os06t0151850-00
Chr06	irgsp1_rep	three_prime_UTR	2678186	2678187	.	-	.	Parent=Os06t0151850-00
Chr06	irgsp1_rep	mRNA	2679054	2680272	.	-	.	ID=Os06t0151900-01;Name=Os06t0151900-01;Locus_id=Os06g0151900;Oryzabase Gene Symbol Synonym(s)=OsPFK06%2C PFK06%2C PFK6;Oryzabase Gene Name Synonym(s)=6-phosphofructokinase plastid isozyme%2C PFK plastid isozyme%2C phosphofructokinase 6;Note=Phosphofructokinase family protein.;Transcript_evidence=AK058759 (DDBJ%2C Best hit);ORF_evidence=NP_001151911.1 (RefSeq);GO=Biological Process: glycolysis (GO:0006096),Cellular Component: 6-phosphofructokinase complex (GO:0005945),Molecular Function: 6-phosphofructokinase activity (GO:0003872);InterPro=Phosphofructokinase domain (IPR000023);NIAS_FLcDNA=001-001-B09;Oryzabase=12048;Expression=AK058759;TENOR=Os06t0151900-01;KEGG=Os06t0151900-01
Chr06	irgsp1_rep	five_prime_UTR	2680271	2680272	.	-	.	Parent=Os06t0151900-01
Chr06	irgsp1_rep	CDS	2680211	2680270	.	-	0	Parent=Os06t0151900-01
Chr06	irgsp1_rep	CDS	2679903	2679948	.	-	0	Parent=Os06t0151900-01
Chr06	irgsp1_rep	CDS	2679658	2679812	.	-	2	Parent=Os06t0151900-01
Chr06	irgsp1_rep	CDS	2679340	2679549	.	-	0	Parent=Os06t0151900-01
Chr06	irgsp1_rep	three_prime_UTR	2679054	2679339	.	-	.	Parent=Os06t0151900-01
Chr06	irgsp1_rep	mRNA	2685128	2688339	.	+	.	ID=Os06t0152000-01;Name=Os06t0152000-01;Locus_id=Os06g0152000;Oryzabase Gene Symbol Synonym(s)=OsPP82;Oryzabase Gene Name Synonym(s)=Protein phosphatase 82;Note=Similar to Dual specificity protein phosphatase family protein.;Transcript_evidence=AK243605 (DDBJ%2C Best hit);ORF_evidence=Q1EP41 (UniProt);NIAS_FLcDNA=J100085D14;Oryzabase=18646;TENOR=Os06t0152000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	2685128	2685215	.	+	.	Parent=Os06t0152000-01
Chr06	irgsp1_rep	CDS	2685216	2685398	.	+	0	Parent=Os06t0152000-01
Chr06	irgsp1_rep	CDS	2685875	2686009	.	+	0	Parent=Os06t0152000-01
Chr06	irgsp1_rep	three_prime_UTR	2686010	2686298	.	+	.	Parent=Os06t0152000-01
Chr06	irgsp1_rep	three_prime_UTR	2686458	2686781	.	+	.	Parent=Os06t0152000-01
Chr06	irgsp1_rep	three_prime_UTR	2687939	2688339	.	+	.	Parent=Os06t0152000-01
Chr06	irgsp1_rep	mRNA	2690219	2693031	.	+	.	ID=Os06t0152100-01;Name=Os06t0152100-01;Locus_id=Os06g0152100;CGSNL Gene Symbol=PRF2;CGSNL Gene Name=PROFILIN 2;Oryzabase Gene Symbol Synonym(s)=OsPRF2;Oryzabase Gene Name Synonym(s)=Profilin-2%2C Profilin 2;Note=Similar to Profilin-2.;Transcript_evidence=AK058798 (DDBJ%2C Best hit),AK121519 (DDBJ%2C Best hit);ORF_evidence=P83647 (UniProt);GO=Biological Process: cytoskeleton organization (GO:0007010),Biological Process: actin cytoskeleton organization (GO:0030036),Cellular Component: actin cytoskeleton (GO:0015629),Molecular Function: actin binding (GO:0003779);InterPro=Profilin/allergen (IPR002097),Profilin%2C plant (IPR005455);NIAS_FLcDNA=001-002-H10,J033028A03;Oryzabase=21146;TENOR=Os06t0152100-01
Chr06	irgsp1_rep	five_prime_UTR	2690219	2690324	.	+	.	Parent=Os06t0152100-01
Chr06	irgsp1_rep	CDS	2690325	2690447	.	+	0	Parent=Os06t0152100-01
Chr06	irgsp1_rep	CDS	2691605	2691742	.	+	0	Parent=Os06t0152100-01
Chr06	irgsp1_rep	CDS	2692624	2692758	.	+	0	Parent=Os06t0152100-01
Chr06	irgsp1_rep	three_prime_UTR	2692759	2693031	.	+	.	Parent=Os06t0152100-01
Chr06	irgsp1_rep	mRNA	2695460	2699468	.	+	.	ID=Os06t0152200-01;Name=Os06t0152200-01;Locus_id=Os06g0152200;Oryzabase Gene Symbol Synonym(s)=OsBBX16%2C OsDBB3a%2C BBX16%2C DBB3a;Oryzabase Gene Name Synonym(s)=B-box-containing protein 16%2C DOUBLE B-BOX zinc finger gene 3a%2C DOUBLE B-BOX 3a;Note=Zinc-finger protein R2931.;Transcript_evidence=AK072231 (DDBJ%2C Best hit);ORF_evidence=A2Y9G2 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C B-box (IPR000315);NIAS_FLcDNA=J023001E21;Oryzabase=11647;Expression=AK072231;TENOR=Os06t0152200-01;KEGG=Os06t0152200-01
Chr06	irgsp1_rep	five_prime_UTR	2695460	2695553	.	+	.	Parent=Os06t0152200-01
Chr06	irgsp1_rep	CDS	2695554	2695763	.	+	0	Parent=Os06t0152200-01
Chr06	irgsp1_rep	CDS	2697347	2697940	.	+	0	Parent=Os06t0152200-01
Chr06	irgsp1_rep	CDS	2698918	2699196	.	+	0	Parent=Os06t0152200-01
Chr06	irgsp1_rep	three_prime_UTR	2699197	2699468	.	+	.	Parent=Os06t0152200-01
Chr06	irgsp1_rep	mRNA	2695492	2699390	.	+	.	ID=Os06t0152200-02;Name=Os06t0152200-02;Locus_id=Os06g0152200;Oryzabase Gene Symbol Synonym(s)=OsBBX16%2C OsDBB3a%2C BBX16%2C DBB3a;Oryzabase Gene Name Synonym(s)=B-box-containing protein 16%2C DOUBLE B-BOX zinc finger gene 3a%2C DOUBLE B-BOX 3a;Note=Zinc-finger protein R2931.;Transcript_evidence=AK104083 (DDBJ%2C Best hit);ORF_evidence=A2Y9G2 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C B-box (IPR000315);NIAS_FLcDNA=001-029-D01;Oryzabase=11647;Expression=AK104083;TENOR=Os06t0152200-02;KEGG=Os06t0152200-02
Chr06	irgsp1_rep	five_prime_UTR	2695492	2695553	.	+	.	Parent=Os06t0152200-02
Chr06	irgsp1_rep	CDS	2695554	2695763	.	+	0	Parent=Os06t0152200-02
Chr06	irgsp1_rep	CDS	2697347	2697940	.	+	0	Parent=Os06t0152200-02
Chr06	irgsp1_rep	CDS	2698918	2699196	.	+	0	Parent=Os06t0152200-02
Chr06	irgsp1_rep	three_prime_UTR	2699197	2699390	.	+	.	Parent=Os06t0152200-02
Chr06	irgsp1_rep	mRNA	2699910	2705021	.	+	.	ID=Os06t0152300-01;Name=Os06t0152300-01;Locus_id=Os06g0152300;Note=Similar to Hexaprenyldihydroxybenzoate methyltransferase%2C mitochondrial precursor (EC 2.1.1.114) (Dihydroxyhexaprenylbenzoate methyltransferase) (3%2C4- dihydroxy-5-hexaprenylbenzoate methyltransferase) (DHHB methyltransferase) (DHHB-MT) (DHHB-MTase).;Transcript_evidence=AK102929 (DDBJ%2C Best hit),AK064315 (DDBJ%2C Best hit);ORF_evidence=XP_002881138.1 (RefSeq);GO=Biological Process: ubiquinone biosynthetic process (GO:0006744),Biological Process: metabolic process (GO:0008152),Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: 2-polyprenyl-6-methoxy-1%2C4-benzoquinone methyltransferase activity (GO:0008425);InterPro=Ubiquinone biosynthesis O-methyltransferase (IPR010233),Methyltransferase type 11 (IPR013216);NIAS_FLcDNA=J033114F14,002-107-C09;Expression=AK102929;TENOR=Os06t0152300-01;KEGG=Os06t0152300-01 (EC:2.1.1.114)
Chr06	irgsp1_rep	five_prime_UTR	2699910	2700067	.	+	.	Parent=Os06t0152300-01
Chr06	irgsp1_rep	CDS	2700068	2700348	.	+	0	Parent=Os06t0152300-01
Chr06	irgsp1_rep	CDS	2700705	2700794	.	+	1	Parent=Os06t0152300-01
Chr06	irgsp1_rep	CDS	2700921	2700999	.	+	1	Parent=Os06t0152300-01
Chr06	irgsp1_rep	CDS	2701824	2701901	.	+	0	Parent=Os06t0152300-01
Chr06	irgsp1_rep	CDS	2702298	2702346	.	+	0	Parent=Os06t0152300-01
Chr06	irgsp1_rep	CDS	2703191	2703240	.	+	2	Parent=Os06t0152300-01
Chr06	irgsp1_rep	CDS	2703712	2703861	.	+	0	Parent=Os06t0152300-01
Chr06	irgsp1_rep	CDS	2704445	2704525	.	+	0	Parent=Os06t0152300-01
Chr06	irgsp1_rep	CDS	2704601	2704726	.	+	0	Parent=Os06t0152300-01
Chr06	irgsp1_rep	three_prime_UTR	2704727	2705021	.	+	.	Parent=Os06t0152300-01
Chr06	irgsp1_rep	mRNA	2706062	2709709	.	+	.	ID=Os06t0152400-01;Name=Os06t0152400-01;Locus_id=Os06g0152400;Note=Similar to Hexaprenyldihydroxybenzoate methyltransferase%2C mitochondrial precursor (EC 2.1.1.114) (Dihydroxyhexaprenylbenzoate methyltransferase) (3%2C4- dihydroxy-5-hexaprenylbenzoate methyltransferase) (DHHB methyltransferase) (DHHB-MT) (DHHB-MTase).;Transcript_evidence=AK064640 (DDBJ%2C Best hit);ORF_evidence=NP_180649.1 (RefSeq);GO=Biological Process: ubiquinone biosynthetic process (GO:0006744),Molecular Function: 2-polyprenyl-6-methoxy-1%2C4-benzoquinone methyltransferase activity (GO:0008425);InterPro=Ubiquinone biosynthesis O-methyltransferase (IPR010233);NIAS_FLcDNA=002-114-B04;Expression=AK064640;TENOR=Os06t0152400-01;KEGG=Os06t0152400-01 (EC:2.1.1.114)
Chr06	irgsp1_rep	five_prime_UTR	2706062	2706113	.	+	.	Parent=Os06t0152400-01
Chr06	irgsp1_rep	CDS	2706114	2706355	.	+	0	Parent=Os06t0152400-01
Chr06	irgsp1_rep	CDS	2706812	2706901	.	+	1	Parent=Os06t0152400-01
Chr06	irgsp1_rep	CDS	2707041	2707119	.	+	1	Parent=Os06t0152400-01
Chr06	irgsp1_rep	CDS	2707242	2707319	.	+	0	Parent=Os06t0152400-01
Chr06	irgsp1_rep	CDS	2707615	2707663	.	+	0	Parent=Os06t0152400-01
Chr06	irgsp1_rep	CDS	2708005	2708054	.	+	2	Parent=Os06t0152400-01
Chr06	irgsp1_rep	CDS	2708158	2708280	.	+	0	Parent=Os06t0152400-01
Chr06	irgsp1_rep	three_prime_UTR	2708281	2708695	.	+	.	Parent=Os06t0152400-01
Chr06	irgsp1_rep	three_prime_UTR	2709116	2709196	.	+	.	Parent=Os06t0152400-01
Chr06	irgsp1_rep	three_prime_UTR	2709271	2709709	.	+	.	Parent=Os06t0152400-01
Chr06	irgsp1_rep	mRNA	2710189	2712417	.	+	.	ID=Os06t0152500-00;Name=Os06t0152500-00;Locus_id=Os06g0152500;Note=Hypothetical conserved gene.;Transcript_evidence=AK336078 (DDBJ);ORF_evidence=B8B2Y8 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os06t0152500-00;KEGG=Os06t0152500-00
Chr06	irgsp1_rep	five_prime_UTR	2710189	2710261	.	+	.	Parent=Os06t0152500-00
Chr06	irgsp1_rep	CDS	2710262	2712346	.	+	0	Parent=Os06t0152500-00
Chr06	irgsp1_rep	three_prime_UTR	2712347	2712417	.	+	.	Parent=Os06t0152500-00
Chr06	irgsp1_rep	mRNA	2713853	2716174	.	+	.	ID=Os06t0152550-01;Name=Os06t0152550-01;Locus_id=Os06g0152550;Note=Conserved hypothetical protein.;Transcript_evidence=AK242713 (DDBJ%2C Best hit);ORF_evidence=NP_001174606.1 (RefSeq);NIAS_FLcDNA=J090041O10;TENOR=Os06t0152550-01;KEGG=Os06t0152550-01
Chr06	irgsp1_rep	five_prime_UTR	2713853	2714845	.	+	.	Parent=Os06t0152550-01
Chr06	irgsp1_rep	CDS	2714846	2715220	.	+	0	Parent=Os06t0152550-01
Chr06	irgsp1_rep	three_prime_UTR	2715221	2716174	.	+	.	Parent=Os06t0152550-01
Chr06	irgsp1_rep	mRNA	2714450	2715128	.	-	.	ID=Os06t0152600-01;Name=Os06t0152600-01;Locus_id=Os06g0152600;Note=Hypothetical gene.;Transcript_evidence=AK070204 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J023042I21;Expression=AK070204;TENOR=Os06t0152600-01;KEGG=Os06t0152600-01
Chr06	irgsp1_rep	five_prime_UTR	2715128	2715128	.	-	.	Parent=Os06t0152600-01
Chr06	irgsp1_rep	CDS	2714870	2715127	.	-	0	Parent=Os06t0152600-01
Chr06	irgsp1_rep	three_prime_UTR	2714450	2714869	.	-	.	Parent=Os06t0152600-01
Chr06	irgsp1_rep	mRNA	2717876	2721617	.	-	.	ID=Os06t0152700-01;Name=Os06t0152700-01;Locus_id=Os06g0152700;Note=Protein of unknown function DUF821%2C CAP10-like family protein.;Transcript_evidence=AK109934 (DDBJ%2C Best hit);ORF_evidence=B6TEG9 (UniProt);InterPro=Lipopolysaccharide-modifying protein (IPR006598),Protein of unknown function DUF821%2C CAP10-like (IPR008539);NIAS_FLcDNA=002-152-H01;Expression=AK109934;TENOR=Os06t0152700-01;KEGG=Os06t0152700-01
Chr06	irgsp1_rep	five_prime_UTR	2721468	2721617	.	-	.	Parent=Os06t0152700-01
Chr06	irgsp1_rep	CDS	2721219	2721467	.	-	0	Parent=Os06t0152700-01
Chr06	irgsp1_rep	CDS	2719373	2720146	.	-	0	Parent=Os06t0152700-01
Chr06	irgsp1_rep	CDS	2719173	2719237	.	-	0	Parent=Os06t0152700-01
Chr06	irgsp1_rep	CDS	2718018	2718573	.	-	1	Parent=Os06t0152700-01
Chr06	irgsp1_rep	three_prime_UTR	2717876	2718017	.	-	.	Parent=Os06t0152700-01
Chr06	irgsp1_rep	mRNA	2724137	2726538	.	-	.	ID=Os06t0152800-01;Name=Os06t0152800-01;Locus_id=Os06g0152800;Note=Conserved hypothetical protein.;Transcript_evidence=AK099578 (DDBJ%2C Best hit);ORF_evidence=B8B2Z2 (UniProt);NIAS_FLcDNA=J013039B21;Expression=AK099578;TENOR=Os06t0152800-01;KEGG=Os06t0152800-01
Chr06	irgsp1_rep	five_prime_UTR	2726479	2726538	.	-	.	Parent=Os06t0152800-01
Chr06	irgsp1_rep	CDS	2726148	2726478	.	-	0	Parent=Os06t0152800-01
Chr06	irgsp1_rep	CDS	2725821	2726053	.	-	2	Parent=Os06t0152800-01
Chr06	irgsp1_rep	CDS	2725566	2725655	.	-	0	Parent=Os06t0152800-01
Chr06	irgsp1_rep	CDS	2725135	2725284	.	-	0	Parent=Os06t0152800-01
Chr06	irgsp1_rep	CDS	2724891	2725015	.	-	0	Parent=Os06t0152800-01
Chr06	irgsp1_rep	CDS	2724612	2724741	.	-	1	Parent=Os06t0152800-01
Chr06	irgsp1_rep	CDS	2724373	2724498	.	-	0	Parent=Os06t0152800-01
Chr06	irgsp1_rep	three_prime_UTR	2724137	2724372	.	-	.	Parent=Os06t0152800-01
Chr06	irgsp1_rep	mRNA	2732676	2733716	.	+	.	ID=Os06t0153000-00;Name=Os06t0153000-00;Locus_id=Os06g0153000;Oryzabase Gene Symbol Synonym(s)=OsCEP10%2C CEP10;Oryzabase Gene Name Synonym(s)=C-TERMINALLY ENCODED PEPTIDE 10;Note=Hypothetical conserved gene.;Transcript_evidence=CT836260 (DDBJ%2C Best hit);ORF_evidence=Q5VMI8 (UniProt);Oryzabase=20958;TENOR=Os06t0153000-00;KEGG=Os06t0153000-00
Chr06	irgsp1_rep	five_prime_UTR	2732676	2732799	.	+	.	Parent=Os06t0153000-00
Chr06	irgsp1_rep	CDS	2732800	2733105	.	+	0	Parent=Os06t0153000-00
Chr06	irgsp1_rep	three_prime_UTR	2733106	2733716	.	+	.	Parent=Os06t0153000-00
Chr06	irgsp1_rep	mRNA	2737888	2739092	.	-	.	ID=Os06t0153100-01;Name=Os06t0153100-01;Locus_id=Os06g0153100;Note=Conserved hypothetical protein.;Transcript_evidence=AK318607 (DDBJ%2C Best hit);ORF_evidence=Q5VMI7 (UniProt);NIAS_FLcDNA=J100078M15;TENOR=Os06t0153100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	2739025	2739092	.	-	.	Parent=Os06t0153100-01
Chr06	irgsp1_rep	CDS	2738763	2739024	.	-	0	Parent=Os06t0153100-01
Chr06	irgsp1_rep	CDS	2738457	2738641	.	-	2	Parent=Os06t0153100-01
Chr06	irgsp1_rep	three_prime_UTR	2737888	2738456	.	-	.	Parent=Os06t0153100-01
Chr06	irgsp1_rep	mRNA	2743656	2749183	.	+	.	ID=Os06t0153200-01;Name=Os06t0153200-01;Locus_id=Os06g0153200;Note=Similar to cDNA clone:J023129O11%2C full insert sequence.;Transcript_evidence=AK106752 (DDBJ%2C Best hit);ORF_evidence=B7EL20 (UniProt);NIAS_FLcDNA=002-115-D01;TENOR=Os06t0153200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	2743656	2743953	.	+	.	Parent=Os06t0153200-01
Chr06	irgsp1_rep	CDS	2743954	2744264	.	+	0	Parent=Os06t0153200-01
Chr06	irgsp1_rep	CDS	2744361	2744538	.	+	1	Parent=Os06t0153200-01
Chr06	irgsp1_rep	CDS	2744612	2744653	.	+	0	Parent=Os06t0153200-01
Chr06	irgsp1_rep	three_prime_UTR	2744654	2744697	.	+	.	Parent=Os06t0153200-01
Chr06	irgsp1_rep	three_prime_UTR	2744814	2744863	.	+	.	Parent=Os06t0153200-01
Chr06	irgsp1_rep	three_prime_UTR	2745069	2745136	.	+	.	Parent=Os06t0153200-01
Chr06	irgsp1_rep	three_prime_UTR	2745975	2746075	.	+	.	Parent=Os06t0153200-01
Chr06	irgsp1_rep	three_prime_UTR	2746196	2746208	.	+	.	Parent=Os06t0153200-01
Chr06	irgsp1_rep	three_prime_UTR	2746741	2746925	.	+	.	Parent=Os06t0153200-01
Chr06	irgsp1_rep	three_prime_UTR	2747002	2747088	.	+	.	Parent=Os06t0153200-01
Chr06	irgsp1_rep	three_prime_UTR	2747644	2747738	.	+	.	Parent=Os06t0153200-01
Chr06	irgsp1_rep	three_prime_UTR	2748153	2748316	.	+	.	Parent=Os06t0153200-01
Chr06	irgsp1_rep	three_prime_UTR	2748602	2749183	.	+	.	Parent=Os06t0153200-01
Chr06	irgsp1_rep	mRNA	2743714	2749183	.	+	.	ID=Os06t0153200-02;Name=Os06t0153200-02;Locus_id=Os06g0153200;Note=Similar to phosphate translocator-related.;Transcript_evidence=AK072625 (DDBJ%2C Best hit);ORF_evidence=NP_973772.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620),Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=J023129O11;Expression=AK072625;TENOR=Os06t0153200-02;KEGG=Os06t0153200-02
Chr06	irgsp1_rep	five_prime_UTR	2743714	2743953	.	+	.	Parent=Os06t0153200-02
Chr06	irgsp1_rep	CDS	2743954	2744264	.	+	0	Parent=Os06t0153200-02
Chr06	irgsp1_rep	CDS	2744361	2744530	.	+	1	Parent=Os06t0153200-02
Chr06	irgsp1_rep	CDS	2744612	2744697	.	+	2	Parent=Os06t0153200-02
Chr06	irgsp1_rep	CDS	2744814	2744863	.	+	0	Parent=Os06t0153200-02
Chr06	irgsp1_rep	CDS	2745069	2745136	.	+	1	Parent=Os06t0153200-02
Chr06	irgsp1_rep	CDS	2745975	2746075	.	+	2	Parent=Os06t0153200-02
Chr06	irgsp1_rep	CDS	2746196	2746208	.	+	0	Parent=Os06t0153200-02
Chr06	irgsp1_rep	CDS	2746741	2746925	.	+	2	Parent=Os06t0153200-02
Chr06	irgsp1_rep	CDS	2747002	2747088	.	+	0	Parent=Os06t0153200-02
Chr06	irgsp1_rep	CDS	2747644	2747738	.	+	0	Parent=Os06t0153200-02
Chr06	irgsp1_rep	CDS	2748153	2748282	.	+	1	Parent=Os06t0153200-02
Chr06	irgsp1_rep	three_prime_UTR	2748283	2748316	.	+	.	Parent=Os06t0153200-02
Chr06	irgsp1_rep	three_prime_UTR	2748602	2749183	.	+	.	Parent=Os06t0153200-02
Chr06	irgsp1_rep	mRNA	2768523	2770429	.	-	.	ID=Os06t0153600-01;Name=Os06t0153600-01;Locus_id=Os06g0153600;Note=Conserved hypothetical protein.;Transcript_evidence=AK099903 (DDBJ%2C Best hit);ORF_evidence=B9FRJ6 (UniProt);NIAS_FLcDNA=J013114I22;Expression=AK099903;TENOR=Os06t0153600-01;KEGG=Os06t0153600-01
Chr06	irgsp1_rep	five_prime_UTR	2770398	2770429	.	-	.	Parent=Os06t0153600-01
Chr06	irgsp1_rep	CDS	2769618	2770397	.	-	0	Parent=Os06t0153600-01
Chr06	irgsp1_rep	CDS	2769485	2769541	.	-	0	Parent=Os06t0153600-01
Chr06	irgsp1_rep	CDS	2769325	2769381	.	-	0	Parent=Os06t0153600-01
Chr06	irgsp1_rep	CDS	2769158	2769247	.	-	0	Parent=Os06t0153600-01
Chr06	irgsp1_rep	CDS	2768870	2768899	.	-	0	Parent=Os06t0153600-01
Chr06	irgsp1_rep	three_prime_UTR	2768523	2768869	.	-	.	Parent=Os06t0153600-01
Chr06	irgsp1_rep	mRNA	2766134	2770398	.	-	.	ID=Os06t0153600-02;Name=Os06t0153600-02;Locus_id=Os06g0153600;Note=Conserved hypothetical protein.;Transcript_evidence=AK109685 (DDBJ%2C Best hit);ORF_evidence=B9FRJ6 (UniProt);NIAS_FLcDNA=002-145-D09;Expression=AK109685;TENOR=Os06t0153600-02;KEGG=Os06t0153600-02
Chr06	irgsp1_rep	five_prime_UTR	2770398	2770398	.	-	.	Parent=Os06t0153600-02
Chr06	irgsp1_rep	CDS	2769618	2770397	.	-	0	Parent=Os06t0153600-02
Chr06	irgsp1_rep	CDS	2769485	2769541	.	-	0	Parent=Os06t0153600-02
Chr06	irgsp1_rep	CDS	2769325	2769381	.	-	0	Parent=Os06t0153600-02
Chr06	irgsp1_rep	CDS	2769158	2769247	.	-	0	Parent=Os06t0153600-02
Chr06	irgsp1_rep	CDS	2768870	2768899	.	-	0	Parent=Os06t0153600-02
Chr06	irgsp1_rep	three_prime_UTR	2768822	2768869	.	-	.	Parent=Os06t0153600-02
Chr06	irgsp1_rep	three_prime_UTR	2766134	2766385	.	-	.	Parent=Os06t0153600-02
Chr06	irgsp1_rep	mRNA	2771073	2774015	.	-	.	ID=Os06t0153800-01;Name=Os06t0153800-01;Locus_id=Os06g0153800;Oryzabase Gene Symbol Synonym(s)=OsPBE1;Oryzabase Gene Name Synonym(s)=20S proteasome beta5 subunit;Note=Beta 5 subunit of 20S proteasome.;Transcript_evidence=AK071652 (DDBJ%2C Best hit),AK104361 (DDBJ%2C Best hit),AK104520 (DDBJ%2C Best hit);ORF_evidence=Q9LST5 (UniProt);GO=Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603),Cellular Component: proteasome core complex (GO:0005839),Molecular Function: endopeptidase activity (GO:0004175),Molecular Function: threonine-type endopeptidase activity (GO:0004298);InterPro=Peptidase T1A%2C proteasome beta-subunit (IPR000243),Proteasome%2C subunit alpha/beta (IPR001353),Proteasome%2C beta-type subunit%2C conserved site (IPR016050),Proteasome B-type subunit (IPR023333);NIAS_FLcDNA=J023099E18,001-035-C04,006-303-E06;Oryzabase=14504;Expression=AK071652;TENOR=Os06t0153800-01;KEGG=Os06t0153800-01 (EC:3.4.25.1)
Chr06	irgsp1_rep	five_prime_UTR	2773955	2774015	.	-	.	Parent=Os06t0153800-01
Chr06	irgsp1_rep	CDS	2773826	2773954	.	-	0	Parent=Os06t0153800-01
Chr06	irgsp1_rep	CDS	2773582	2773711	.	-	0	Parent=Os06t0153800-01
Chr06	irgsp1_rep	CDS	2772558	2772664	.	-	2	Parent=Os06t0153800-01
Chr06	irgsp1_rep	CDS	2772353	2772487	.	-	0	Parent=Os06t0153800-01
Chr06	irgsp1_rep	CDS	2772160	2772263	.	-	0	Parent=Os06t0153800-01
Chr06	irgsp1_rep	CDS	2771971	2772071	.	-	1	Parent=Os06t0153800-01
Chr06	irgsp1_rep	CDS	2771395	2771522	.	-	2	Parent=Os06t0153800-01
Chr06	irgsp1_rep	three_prime_UTR	2771073	2771394	.	-	.	Parent=Os06t0153800-01
Chr06	irgsp1_rep	mRNA	2774537	2779879	.	-	.	ID=Os06t0153900-01;Name=Os06t0153900-01;Locus_id=Os06g0153900;Oryzabase Gene Symbol Synonym(s)=OsHOL2;Oryzabase Gene Name Synonym(s)=HARMLESS TO OZONE LAYER 2;Note=Similar to Thiol methyltransferase 2.;Transcript_evidence=AK061306 (DDBJ%2C Best hit);ORF_evidence=NP_001147771.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Cellular Component: cytoplasm (GO:0005737),Molecular Function: thiopurine S-methyltransferase activity (GO:0008119);InterPro=Thiopurine S-methyltransferase (IPR008854);NIAS_FLcDNA=006-301-H08;Oryzabase=11279;Expression=AK061306;TENOR=Os06t0153900-01;KEGG=Os06t0153900-01
Chr06	irgsp1_rep	five_prime_UTR	2779848	2779879	.	-	.	Parent=Os06t0153900-01
Chr06	irgsp1_rep	CDS	2779694	2779847	.	-	0	Parent=Os06t0153900-01
Chr06	irgsp1_rep	CDS	2779017	2779148	.	-	2	Parent=Os06t0153900-01
Chr06	irgsp1_rep	CDS	2778348	2778433	.	-	2	Parent=Os06t0153900-01
Chr06	irgsp1_rep	CDS	2776363	2776463	.	-	0	Parent=Os06t0153900-01
Chr06	irgsp1_rep	CDS	2776191	2776290	.	-	1	Parent=Os06t0153900-01
Chr06	irgsp1_rep	CDS	2775368	2775414	.	-	0	Parent=Os06t0153900-01
Chr06	irgsp1_rep	CDS	2775149	2775227	.	-	1	Parent=Os06t0153900-01
Chr06	irgsp1_rep	CDS	2774792	2774845	.	-	0	Parent=Os06t0153900-01
Chr06	irgsp1_rep	three_prime_UTR	2774537	2774791	.	-	.	Parent=Os06t0153900-01
Chr06	irgsp1_rep	mRNA	2774451	2779814	.	-	.	ID=Os06t0153900-02;Name=Os06t0153900-02;Locus_id=Os06g0153900;Oryzabase Gene Symbol Synonym(s)=OsHOL2;Oryzabase Gene Name Synonym(s)=HARMLESS TO OZONE LAYER 2;Note=Similar to Thiol methyltransferase 2.;Transcript_evidence=AK101884 (DDBJ%2C Best hit);ORF_evidence=NP_001147771.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Cellular Component: cytoplasm (GO:0005737),Molecular Function: thiopurine S-methyltransferase activity (GO:0008119);InterPro=Thiopurine S-methyltransferase (IPR008854);NIAS_FLcDNA=J033070L07;Oryzabase=11279;Expression=AK101884;TENOR=Os06t0153900-02;KEGG=Os06t0153900-02
Chr06	irgsp1_rep	five_prime_UTR	2779800	2779814	.	-	.	Parent=Os06t0153900-02
Chr06	irgsp1_rep	CDS	2779694	2779799	.	-	0	Parent=Os06t0153900-02
Chr06	irgsp1_rep	CDS	2779017	2779148	.	-	2	Parent=Os06t0153900-02
Chr06	irgsp1_rep	CDS	2778348	2778433	.	-	2	Parent=Os06t0153900-02
Chr06	irgsp1_rep	CDS	2776363	2776463	.	-	0	Parent=Os06t0153900-02
Chr06	irgsp1_rep	CDS	2776191	2776290	.	-	1	Parent=Os06t0153900-02
Chr06	irgsp1_rep	CDS	2775368	2775414	.	-	0	Parent=Os06t0153900-02
Chr06	irgsp1_rep	CDS	2775149	2775227	.	-	1	Parent=Os06t0153900-02
Chr06	irgsp1_rep	CDS	2774792	2774845	.	-	0	Parent=Os06t0153900-02
Chr06	irgsp1_rep	three_prime_UTR	2774451	2774791	.	-	.	Parent=Os06t0153900-02
Chr06	irgsp1_rep	mRNA	2780788	2785226	.	+	.	ID=Os06t0154200-01;Name=Os06t0154200-01;Locus_id=Os06g0154200;RAP-DB Gene Symbol Synonym(s)=D3%2C SOL1%2C d3%2C dwf3%2C D3/OsMAX2%2C Os_F0760%2C  OsORE9;RAP-DB Gene Name Synonym(s)=DWARF BUNKETSUWAITO TILLERING%2C bunketsuwaito tillering dwarf%2C dwarf-3%2C F-box/LRR-repeat MAX2 homolog%2C F-box and leucine-rich repeat MAX2 homolog%2C DWARF 3%2C DWARF-3%2C suppressor of lazy1%2C DWARF3%2C ORESARA 9%2C  MAX2 ortholog;CGSNL Gene Symbol=D3;CGSNL Gene Name=DWARF BUNKETSUWAITO TILLERING;Oryzabase Gene Symbol Synonym(s)=d3%2C dwf3%2C D3/OsMAX2%2C Os_F0760%2C SOL1%2C OsORE9%2C ORE9%2C MAX2%2C OsRFPH2-10%2C RFPH2-10%2C OsD3;Oryzabase Gene Name Synonym(s)=bunketsuwaito tillering dwarf%2C dwarf-3%2C F-box/LRR-repeat MAX2 homolog%2C F-box and leucine-rich repeat MAX2 homolog%2C DWARF 3%2C DWARF-3%2C suppressor of lazy1%2C DWARF3%2C ORESARA 9%2C MAX2 ortholog;Note=F-box component of the SKP-Cullin-F box (SCF) E3 ubiquitin ligase complex%2C Strigolactone (SL) signal perception;Transcript_evidence=AK065478;ORF_evidence=Q5VMP0;GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain (IPR001810);NIAS_FLcDNA=J013024O22;Manual Curation=August 20%2C 2014;Literature_PMID=25028496;Oryzabase=634;TENOR=Os06t0154200-01;KEGG=Os06t0154200-01
Chr06	irgsp1_rep	five_prime_UTR	2780788	2780797	.	+	.	Parent=Os06t0154200-01
Chr06	irgsp1_rep	CDS	2780798	2782960	.	+	0	Parent=Os06t0154200-01
Chr06	irgsp1_rep	three_prime_UTR	2782961	2783049	.	+	.	Parent=Os06t0154200-01
Chr06	irgsp1_rep	three_prime_UTR	2783598	2783691	.	+	.	Parent=Os06t0154200-01
Chr06	irgsp1_rep	three_prime_UTR	2783763	2784418	.	+	.	Parent=Os06t0154200-01
Chr06	irgsp1_rep	three_prime_UTR	2784518	2785226	.	+	.	Parent=Os06t0154200-01
Chr06	irgsp1_rep	mRNA	2781480	2783282	.	+	.	ID=Os06t0154200-02;Name=Os06t0154200-02;Locus_id=Os06g0154200;CGSNL Gene Symbol=D3;CGSNL Gene Name=DWARF BUNKETSUWAITO TILLERING;Oryzabase Gene Symbol Synonym(s)=d3%2C dwf3%2C D3/OsMAX2%2C Os_F0760%2C SOL1%2C OsORE9%2C ORE9%2C MAX2%2C OsRFPH2-10%2C RFPH2-10%2C OsD3;Oryzabase Gene Name Synonym(s)=bunketsuwaito tillering dwarf%2C dwarf-3%2C F-box/LRR-repeat MAX2 homolog%2C F-box and leucine-rich repeat MAX2 homolog%2C DWARF 3%2C DWARF-3%2C suppressor of lazy1%2C DWARF3%2C ORESARA 9%2C MAX2 ortholog;Note=Similar to F-box/LRR-repeat MAX2 homolog.;Transcript_evidence=AK107102 (DDBJ%2C Best hit);ORF_evidence=Q5VMP0 (UniProt);InterPro=Leucine-rich repeat%2C cysteine-containing subtype (IPR006553);NIAS_FLcDNA=002-122-A05;Oryzabase=634;TENOR=Os06t0154200-02;KEGG=Os06t0154200-02
Chr06	irgsp1_rep	five_prime_UTR	2781480	2781481	.	+	.	Parent=Os06t0154200-02
Chr06	irgsp1_rep	CDS	2781482	2782960	.	+	0	Parent=Os06t0154200-02
Chr06	irgsp1_rep	three_prime_UTR	2782961	2783282	.	+	.	Parent=Os06t0154200-02
Chr06	irgsp1_rep	mRNA	2781424	2781795	.	-	.	ID=Os06t0154300-00;Name=Os06t0154300-00;Locus_id=Os06g0154300;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os06t0154300-00
Chr06	irgsp1_rep	CDS	2781424	2781795	.	-	0	Parent=Os06t0154300-00
Chr06	irgsp1_rep	mRNA	2803042	2806247	.	+	.	ID=Os06t0154400-01;Name=Os06t0154400-01;Locus_id=Os06g0154400;Note=Domain of unknown function DUF676%2C lipase-like domain containing protein.;Transcript_evidence=AK067799 (DDBJ%2C Best hit);ORF_evidence=B9FRK0 (UniProt);InterPro=Domain of unknown function DUF676%2C lipase-like (IPR007751);NIAS_FLcDNA=J013114C10;TENOR=Os06t0154400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	2803042	2803465	.	+	.	Parent=Os06t0154400-01
Chr06	irgsp1_rep	CDS	2803466	2803626	.	+	0	Parent=Os06t0154400-01
Chr06	irgsp1_rep	CDS	2803763	2803830	.	+	1	Parent=Os06t0154400-01
Chr06	irgsp1_rep	CDS	2804052	2804122	.	+	2	Parent=Os06t0154400-01
Chr06	irgsp1_rep	CDS	2804242	2804523	.	+	0	Parent=Os06t0154400-01
Chr06	irgsp1_rep	three_prime_UTR	2804524	2805504	.	+	.	Parent=Os06t0154400-01
Chr06	irgsp1_rep	three_prime_UTR	2805605	2805702	.	+	.	Parent=Os06t0154400-01
Chr06	irgsp1_rep	three_prime_UTR	2805795	2806247	.	+	.	Parent=Os06t0154400-01
Chr06	irgsp1_rep	mRNA	2806668	2812929	.	-	.	ID=Os06t0154500-01;Name=Os06t0154500-01;Locus_id=Os06g0154500;RAP-DB Gene Symbol Synonym(s)=MAPK6%2C OsMAPK6%2C OsMPK6%2C OsSIPK%2C SIPK%2C OsMAPK1%2C MAPK1%2C MPK1%2C OsMPK1%2C MPK6%2C DSG1;RAP-DB Gene Name Synonym(s)=MITOGEN-ACTIVATED PROTEIN KINASE 6%2C Mitogen-activated protein kinase 1%2C MAP kinase 1%2C MAP kinase 6%2C dwarf and small grain1;CGSNL Gene Symbol=DSG1;CGSNL Gene Name=DWARF AND SMALL GRAIN 1;Oryzabase Gene Symbol Synonym(s)=OsMAPK6%2C MAPK6%2C OsMPK6%2C OsSIPK%2C SIPK%2C OsMAPK1%2C MAPK1%2C MPK1%2C OsMPK1%2C MPK6%2C OsDSG1;Oryzabase Gene Name Synonym(s)=Mitogen-activated protein kinase 1%2C MAP kinase 1%2C MAP kinase 6%2C dwarf and small grain1;Note=Mitogen-activated protein kinase%2C Brassinosteroid (BR) signaling and homeostasis%2C Regulation of grain size and plant height;Transcript_evidence=AB183398 (Kinmaze),AJ535841,AK111942;ORF_evidence=Q84UI5;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: MAP kinase activity (GO:0004707),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine/threonine/dual specificity protein kinase%2C catalytic  domain (IPR002290),Protein kinase%2C ATP binding site (IPR017441),Mitogen-activated protein (MAP) kinase%2C conserved site (IPR003527),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=001-021-F11, J023007A05;Manual Curation=November 16%2C 2015;Literature_PMID=26366992,15951489;Oryzabase=6221;Expression=AK111942;TENOR=Os06t0154500-01;KEGG=Os06t0154500-01 (EC:2.7.11.24)
Chr06	irgsp1_rep	five_prime_UTR	2812851	2812929	.	-	.	Parent=Os06t0154500-01
Chr06	irgsp1_rep	CDS	2812606	2812850	.	-	0	Parent=Os06t0154500-01
Chr06	irgsp1_rep	CDS	2812389	2812518	.	-	1	Parent=Os06t0154500-01
Chr06	irgsp1_rep	CDS	2809694	2809831	.	-	0	Parent=Os06t0154500-01
Chr06	irgsp1_rep	CDS	2808302	2808634	.	-	0	Parent=Os06t0154500-01
Chr06	irgsp1_rep	CDS	2807790	2807970	.	-	0	Parent=Os06t0154500-01
Chr06	irgsp1_rep	CDS	2807007	2807176	.	-	2	Parent=Os06t0154500-01
Chr06	irgsp1_rep	three_prime_UTR	2806668	2807006	.	-	.	Parent=Os06t0154500-01
Chr06	irgsp1_rep	mRNA	2812353	2812900	.	+	.	ID=Os06t0154550-00;Name=Os06t0154550-00;Locus_id=Os06g0154550;Note=Hypothetical gene.;Transcript_evidence=EU950357 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0154550-00
Chr06	irgsp1_rep	five_prime_UTR	2812353	2812364	.	+	.	Parent=Os06t0154550-00
Chr06	irgsp1_rep	CDS	2812365	2812900	.	+	0	Parent=Os06t0154550-00
Chr06	irgsp1_rep	mRNA	2816448	2817060	.	-	.	ID=Os06t0154600-00;Name=Os06t0154600-00;Locus_id=Os06g0154600;Note=Similar to Dihydroneopterin aldolase.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001147240.1 (RefSeq);GO=Biological Process: folic acid-containing compound metabolic process (GO:0006760),Molecular Function: dihydroneopterin aldolase activity (GO:0004150);InterPro=Dihydroneopterin aldolase (IPR006156),Dihydroneopterin aldolase/epimerase domain (IPR006157);TENOR=Os06t0154600-00;KEGG=Os06t0154600-00
Chr06	irgsp1_rep	CDS	2816864	2817060	.	-	0	Parent=Os06t0154600-00
Chr06	irgsp1_rep	CDS	2816448	2816667	.	-	1	Parent=Os06t0154600-00
Chr06	irgsp1_rep	mRNA	2827985	2830314	.	+	.	ID=Os06t0154800-01;Name=Os06t0154800-01;Locus_id=Os06g0154800;Note=Hypothetical conserved gene.;Transcript_evidence=AK072563 (DDBJ%2C Best hit);ORF_evidence=B9GCU9 (UniProt);NIAS_FLcDNA=J023134L02;Expression=AK072563;TENOR=Os06t0154800-01;KEGG=Os06t0154800-01
Chr06	irgsp1_rep	CDS	2827985	2828284	.	+	0	Parent=Os06t0154800-01
Chr06	irgsp1_rep	CDS	2829881	2830069	.	+	0	Parent=Os06t0154800-01
Chr06	irgsp1_rep	three_prime_UTR	2830070	2830314	.	+	.	Parent=Os06t0154800-01
Chr06	irgsp1_rep	mRNA	2832490	2836293	.	+	.	ID=Os06t0154900-01;Name=Os06t0154900-01;Locus_id=Os06g0154900;Note=Similar to RING-type E3 ubiquitin ligase.;Transcript_evidence=AK101097 (DDBJ%2C Best hit);ORF_evidence=B8YPX6 (UniProt);NIAS_FLcDNA=J033024O05;TENOR=Os06t0154900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	2832490	2832683	.	+	.	Parent=Os06t0154900-01
Chr06	irgsp1_rep	CDS	2832684	2832884	.	+	0	Parent=Os06t0154900-01
Chr06	irgsp1_rep	CDS	2832994	2833045	.	+	0	Parent=Os06t0154900-01
Chr06	irgsp1_rep	CDS	2833156	2833201	.	+	2	Parent=Os06t0154900-01
Chr06	irgsp1_rep	CDS	2833348	2833429	.	+	1	Parent=Os06t0154900-01
Chr06	irgsp1_rep	CDS	2833523	2833679	.	+	0	Parent=Os06t0154900-01
Chr06	irgsp1_rep	CDS	2833763	2834019	.	+	2	Parent=Os06t0154900-01
Chr06	irgsp1_rep	three_prime_UTR	2834020	2835016	.	+	.	Parent=Os06t0154900-01
Chr06	irgsp1_rep	three_prime_UTR	2835472	2836293	.	+	.	Parent=Os06t0154900-01
Chr06	irgsp1_rep	mRNA	2832953	2836293	.	+	.	ID=Os06t0154900-02;Name=Os06t0154900-02;Locus_id=Os06g0154900;Note=Similar to F3F9.7.;Transcript_evidence=AK100646 (DDBJ%2C Best hit);ORF_evidence=Q9M9F8 (UniProt);NIAS_FLcDNA=J023110L03;TENOR=Os06t0154900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	2832953	2833045	.	+	.	Parent=Os06t0154900-02
Chr06	irgsp1_rep	five_prime_UTR	2833156	2833339	.	+	.	Parent=Os06t0154900-02
Chr06	irgsp1_rep	CDS	2833340	2833429	.	+	0	Parent=Os06t0154900-02
Chr06	irgsp1_rep	CDS	2833523	2833679	.	+	0	Parent=Os06t0154900-02
Chr06	irgsp1_rep	CDS	2833763	2834019	.	+	2	Parent=Os06t0154900-02
Chr06	irgsp1_rep	three_prime_UTR	2834020	2835016	.	+	.	Parent=Os06t0154900-02
Chr06	irgsp1_rep	three_prime_UTR	2835472	2836293	.	+	.	Parent=Os06t0154900-02
Chr06	irgsp1_rep	mRNA	2840821	2841056	.	+	.	ID=Os06t0155050-00;Name=Os06t0155050-00;Locus_id=Os06g0155050;Note=Hypothetical protein.;Transcript_evidence=EU947580 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0155050-00
Chr06	irgsp1_rep	five_prime_UTR	2840821	2840821	.	+	.	Parent=Os06t0155050-00
Chr06	irgsp1_rep	CDS	2840822	2841056	.	+	0	Parent=Os06t0155050-00
Chr06	irgsp1_rep	mRNA	2855669	2859559	.	+	.	ID=Os06t0155300-01;Name=Os06t0155300-01;Locus_id=Os06g0155300;Note=IQ calmodulin-binding region domain containing protein.;Transcript_evidence=AK099462 (DDBJ%2C Best hit);ORF_evidence=B6TIB2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);NIAS_FLcDNA=J013023F20;Expression=AK099462;TENOR=Os06t0155300-01;KEGG=Os06t0155300-01
Chr06	irgsp1_rep	five_prime_UTR	2855669	2855873	.	+	.	Parent=Os06t0155300-01
Chr06	irgsp1_rep	five_prime_UTR	2856235	2856280	.	+	.	Parent=Os06t0155300-01
Chr06	irgsp1_rep	CDS	2856281	2856355	.	+	0	Parent=Os06t0155300-01
Chr06	irgsp1_rep	CDS	2857695	2857838	.	+	0	Parent=Os06t0155300-01
Chr06	irgsp1_rep	CDS	2857943	2858170	.	+	0	Parent=Os06t0155300-01
Chr06	irgsp1_rep	CDS	2858382	2858495	.	+	0	Parent=Os06t0155300-01
Chr06	irgsp1_rep	CDS	2858757	2859257	.	+	0	Parent=Os06t0155300-01
Chr06	irgsp1_rep	three_prime_UTR	2859258	2859559	.	+	.	Parent=Os06t0155300-01
Chr06	irgsp1_rep	mRNA	2858898	2859540	.	+	.	ID=Os06t0155300-02;Name=Os06t0155300-02;Locus_id=Os06g0155300;Note=Similar to calmodulin binding protein.;Transcript_evidence=AK061616 (DDBJ%2C Best hit);ORF_evidence=B6TIB2 (UniProt);NIAS_FLcDNA=001-033-C07;Expression=AK061616;TENOR=Os06t0155300-02;KEGG=Os06t0155300-02
Chr06	irgsp1_rep	CDS	2858898	2859257	.	+	0	Parent=Os06t0155300-02
Chr06	irgsp1_rep	three_prime_UTR	2859258	2859540	.	+	.	Parent=Os06t0155300-02
Chr06	irgsp1_rep	mRNA	2859811	2861298	.	-	.	ID=Os06t0155400-00;Name=Os06t0155400-00;Locus_id=Os06g0155400;Note=Conserved hypothetical protein.;Transcript_evidence=AK361186 (DDBJ);ORF_evidence=B9FRK4 (UniProt);TENOR=Os06t0155400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	2860924	2861298	.	-	0	Parent=Os06t0155400-00
Chr06	irgsp1_rep	CDS	2860812	2860829	.	-	0	Parent=Os06t0155400-00
Chr06	irgsp1_rep	three_prime_UTR	2860624	2860811	.	-	.	Parent=Os06t0155400-00
Chr06	irgsp1_rep	three_prime_UTR	2859811	2860509	.	-	.	Parent=Os06t0155400-00
Chr06	irgsp1_rep	mRNA	2861696	2863179	.	-	.	ID=Os06t0155500-00;Name=Os06t0155500-00;Locus_id=Os06g0155500;Note=Transferase family protein.;Transcript_evidence=AK363829 (DDBJ);ORF_evidence=NP_001056851.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os06t0155500-00;KEGG=Os06t0155500-00
Chr06	irgsp1_rep	CDS	2862338	2863179	.	-	0	Parent=Os06t0155500-00
Chr06	irgsp1_rep	CDS	2861700	2862249	.	-	1	Parent=Os06t0155500-00
Chr06	irgsp1_rep	three_prime_UTR	2861696	2861699	.	-	.	Parent=Os06t0155500-00
Chr06	irgsp1_rep	mRNA	2863462	2867673	.	+	.	ID=Os06t0155600-01;Name=Os06t0155600-01;Locus_id=Os06g0155600;Note=ATPase%2C AAA-type%2C core domain containing protein.;Transcript_evidence=AK101138 (DDBJ%2C Best hit);ORF_evidence=NP_177460.2 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959);NIAS_FLcDNA=J033026K14;Expression=AK101138;TENOR=Os06t0155600-01;KEGG=Os06t0155600-01
Chr06	irgsp1_rep	five_prime_UTR	2863462	2863505	.	+	.	Parent=Os06t0155600-01
Chr06	irgsp1_rep	CDS	2863506	2863880	.	+	0	Parent=Os06t0155600-01
Chr06	irgsp1_rep	CDS	2863964	2864178	.	+	0	Parent=Os06t0155600-01
Chr06	irgsp1_rep	CDS	2864306	2864456	.	+	1	Parent=Os06t0155600-01
Chr06	irgsp1_rep	CDS	2864574	2864765	.	+	0	Parent=Os06t0155600-01
Chr06	irgsp1_rep	CDS	2865479	2865641	.	+	0	Parent=Os06t0155600-01
Chr06	irgsp1_rep	CDS	2865762	2865997	.	+	2	Parent=Os06t0155600-01
Chr06	irgsp1_rep	CDS	2866454	2866630	.	+	0	Parent=Os06t0155600-01
Chr06	irgsp1_rep	CDS	2866715	2866834	.	+	0	Parent=Os06t0155600-01
Chr06	irgsp1_rep	CDS	2866947	2867249	.	+	0	Parent=Os06t0155600-01
Chr06	irgsp1_rep	three_prime_UTR	2867250	2867673	.	+	.	Parent=Os06t0155600-01
Chr06	irgsp1_rep	mRNA	2870165	2870446	.	+	.	ID=Os06t0155750-00;Name=Os06t0155750-00;Locus_id=Os06g0155750;Note=Hypothetical conserved gene.;Transcript_evidence=AB332077 (DDBJ%2C Best hit);ORF_evidence=B9FRK5 (UniProt);TENOR=Os06t0155750-00;KEGG=Os06t0155750-00
Chr06	irgsp1_rep	CDS	2870165	2870446	.	+	0	Parent=Os06t0155750-00
Chr06	irgsp1_rep	mRNA	2874384	2875918	.	+	.	ID=Os06t0155900-01;Name=Os06t0155900-01;Locus_id=Os06g0155900;Note=Conserved hypothetical protein.;Transcript_evidence=AK060403 (DDBJ%2C Best hit);ORF_evidence=Q5VMB1 (UniProt);NIAS_FLcDNA=001-010-C08;Expression=AK060403;TENOR=Os06t0155900-01;KEGG=Os06t0155900-01
Chr06	irgsp1_rep	five_prime_UTR	2874384	2874564	.	+	.	Parent=Os06t0155900-01
Chr06	irgsp1_rep	CDS	2874565	2875057	.	+	0	Parent=Os06t0155900-01
Chr06	irgsp1_rep	CDS	2875534	2875826	.	+	2	Parent=Os06t0155900-01
Chr06	irgsp1_rep	three_prime_UTR	2875827	2875918	.	+	.	Parent=Os06t0155900-01
Chr06	irgsp1_rep	mRNA	2874485	2877067	.	+	.	ID=Os06t0155900-02;Name=Os06t0155900-02;Locus_id=Os06g0155900;Note=Conserved hypothetical protein.;Transcript_evidence=AK073997 (DDBJ%2C Best hit);ORF_evidence=Q5VMB1 (UniProt);NIAS_FLcDNA=J033074E11;Expression=AK073997;TENOR=Os06t0155900-02;KEGG=Os06t0155900-02
Chr06	irgsp1_rep	five_prime_UTR	2874485	2874564	.	+	.	Parent=Os06t0155900-02
Chr06	irgsp1_rep	CDS	2874565	2875057	.	+	0	Parent=Os06t0155900-02
Chr06	irgsp1_rep	CDS	2875534	2875826	.	+	2	Parent=Os06t0155900-02
Chr06	irgsp1_rep	three_prime_UTR	2875827	2877067	.	+	.	Parent=Os06t0155900-02
Chr06	irgsp1_rep	mRNA	2883871	2885066	.	-	.	ID=Os06t0156400-00;Name=Os06t0156400-00;Locus_id=Os06g0156400;CGSNL Gene Symbol=GELP76;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 76;Oryzabase Gene Symbol Synonym(s)=OsGELP76;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 76;Note=Similar to carboxylic ester hydrolase/ hydrolase%2C acting on ester bonds.;Transcript_evidence=AK334535 (DDBJ);ORF_evidence=NP_001148234.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087),Esterase%2C SGNH hydrolase-type (IPR013830),Esterase%2C SGNH hydrolase-type%2C subgroup (IPR013831);Oryzabase=11026;TENOR=Os06t0156400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	2885065	2885066	.	-	.	Parent=Os06t0156400-00
Chr06	irgsp1_rep	CDS	2884632	2885064	.	-	0	Parent=Os06t0156400-00
Chr06	irgsp1_rep	CDS	2884401	2884528	.	-	2	Parent=Os06t0156400-00
Chr06	irgsp1_rep	CDS	2883871	2884065	.	-	0	Parent=Os06t0156400-00
Chr06	irgsp1_rep	mRNA	2888765	2889982	.	+	.	ID=Os06t0156501-00;Name=Os06t0156501-00;Locus_id=Os06g0156501;Note=Conserved hypothetical protein.;Transcript_evidence=CT836282 (DDBJ%2C Best hit);ORF_evidence=Q6I543 (UniProt);TENOR=Os06t0156501-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	2888765	2889078	.	+	.	Parent=Os06t0156501-00
Chr06	irgsp1_rep	CDS	2889079	2889153	.	+	0	Parent=Os06t0156501-00
Chr06	irgsp1_rep	three_prime_UTR	2889154	2889982	.	+	.	Parent=Os06t0156501-00
Chr06	irgsp1_rep	mRNA	2893694	2895804	.	+	.	ID=Os06t0156600-01;Name=Os06t0156600-01;Locus_id=Os06g0156600;CGSNL Gene Symbol=GELP77;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 77;Oryzabase Gene Symbol Synonym(s)=OsGELP77%2C OsGELP77a%2C OsGELP77b;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 77;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK121780 (DDBJ%2C Best hit),AK061497 (DDBJ%2C Best hit),AK104394 (DDBJ%2C Best hit),AK104883 (DDBJ%2C Best hit);ORF_evidence=NP_001142390.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087),Esterase%2C SGNH hydrolase-type%2C subgroup (IPR013831);NIAS_FLcDNA=J033093M11,006-309-D03,006-202-C04,001-044-H08;Oryzabase=11027;Expression=AK121780;TENOR=Os06t0156600-01;KEGG=Os06t0156600-01
Chr06	irgsp1_rep	five_prime_UTR	2893694	2893757	.	+	.	Parent=Os06t0156600-01
Chr06	irgsp1_rep	CDS	2893758	2893992	.	+	0	Parent=Os06t0156600-01
Chr06	irgsp1_rep	CDS	2894126	2894335	.	+	2	Parent=Os06t0156600-01
Chr06	irgsp1_rep	CDS	2894423	2894845	.	+	2	Parent=Os06t0156600-01
Chr06	irgsp1_rep	CDS	2895308	2895522	.	+	2	Parent=Os06t0156600-01
Chr06	irgsp1_rep	three_prime_UTR	2895523	2895804	.	+	.	Parent=Os06t0156600-01
Chr06	irgsp1_rep	mRNA	2893760	2895512	.	-	.	ID=Os06t0156650-00;Name=Os06t0156650-00;Locus_id=Os06g0156650;Note=Hypothetical protein.;Transcript_evidence=tplb0048c08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0156650-00
Chr06	irgsp1_rep	five_prime_UTR	2895445	2895512	.	-	.	Parent=Os06t0156650-00
Chr06	irgsp1_rep	CDS	2895310	2895444	.	-	0	Parent=Os06t0156650-00
Chr06	irgsp1_rep	CDS	2894392	2894847	.	-	0	Parent=Os06t0156650-00
Chr06	irgsp1_rep	three_prime_UTR	2894387	2894391	.	-	.	Parent=Os06t0156650-00
Chr06	irgsp1_rep	three_prime_UTR	2894123	2894310	.	-	.	Parent=Os06t0156650-00
Chr06	irgsp1_rep	three_prime_UTR	2893760	2893990	.	-	.	Parent=Os06t0156650-00
Chr06	irgsp1_rep	mRNA	2898787	2900606	.	+	.	ID=Os06t0156700-01;Name=Os06t0156700-01;Locus_id=Os06g0156700;RAP-DB Gene Symbol Synonym(s)=OsGLIP2;RAP-DB Gene Name Synonym(s)=GDSL lipase 2;CGSNL Gene Symbol=GELP78;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 78;Oryzabase Gene Symbol Synonym(s)=OsGELP78%2C OsEnS-82%2C EnS-82%2C OsGLIP2%2C GLIP2;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 78%2C endosperm-specific gene 82%2C GDSL lipase 2;Note=GDSL lipase%2C Negative regulation of disease resistance;Transcript_evidence=AK107226;ORF_evidence=Q5VMA4;GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: lipase activity (GO:0016298),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=SGNH hydrolase superfamily (IPR036514),GDSL lipase/esterase (IPR001087),GDSL lipase/esterase-like%2C plant (IPR035669),Lipase%2C GDSL%2C active site (IPR008265);NIAS_FLcDNA=002-125-D10;Manual Curation=October 22%2C 2018;Literature_PMID=29131851;Oryzabase=11028;Expression=AK107226;TENOR=Os06t0156700-01;KEGG=Os06t0156700-01;Subcellular location=lipid droplet (GO:0005811), endoplasmic reticulum membrane (GO:0005789)
Chr06	irgsp1_rep	five_prime_UTR	2898787	2898809	.	+	.	Parent=Os06t0156700-01
Chr06	irgsp1_rep	CDS	2898810	2899134	.	+	0	Parent=Os06t0156700-01
Chr06	irgsp1_rep	CDS	2899214	2899438	.	+	2	Parent=Os06t0156700-01
Chr06	irgsp1_rep	CDS	2899549	2899695	.	+	2	Parent=Os06t0156700-01
Chr06	irgsp1_rep	CDS	2899789	2900088	.	+	2	Parent=Os06t0156700-01
Chr06	irgsp1_rep	CDS	2900188	2900405	.	+	2	Parent=Os06t0156700-01
Chr06	irgsp1_rep	three_prime_UTR	2900406	2900606	.	+	.	Parent=Os06t0156700-01
Chr06	irgsp1_rep	mRNA	2898849	2900408	.	-	.	ID=Os06t0156801-00;Name=Os06t0156801-00;Locus_id=Os06g0156801;Note=Hypothetical protein.;Transcript_evidence=tplb0048c08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0156801-00
Chr06	irgsp1_rep	five_prime_UTR	2900187	2900408	.	-	.	Parent=Os06t0156801-00
Chr06	irgsp1_rep	five_prime_UTR	2899786	2900076	.	-	.	Parent=Os06t0156801-00
Chr06	irgsp1_rep	five_prime_UTR	2899533	2899692	.	-	.	Parent=Os06t0156801-00
Chr06	irgsp1_rep	five_prime_UTR	2899341	2899412	.	-	.	Parent=Os06t0156801-00
Chr06	irgsp1_rep	CDS	2899211	2899340	.	-	0	Parent=Os06t0156801-00
Chr06	irgsp1_rep	CDS	2898849	2899132	.	-	2	Parent=Os06t0156801-00
Chr06	irgsp1_rep	mRNA	2902268	2907302	.	+	.	ID=Os06t0156900-01;Name=Os06t0156900-01;Locus_id=Os06g0156900;Note=Glycosyl transferase%2C family 31 protein.;Transcript_evidence=AK110688 (DDBJ%2C Best hit);ORF_evidence=NP_001152267.1 (RefSeq);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Glycosyl transferase%2C family 31 (IPR002659);NIAS_FLcDNA=002-170-A01;Expression=AK110688;TENOR=Os06t0156900-01;KEGG=Os06t0156900-01
Chr06	irgsp1_rep	five_prime_UTR	2902268	2902328	.	+	.	Parent=Os06t0156900-01
Chr06	irgsp1_rep	CDS	2902329	2902747	.	+	0	Parent=Os06t0156900-01
Chr06	irgsp1_rep	CDS	2903681	2903833	.	+	1	Parent=Os06t0156900-01
Chr06	irgsp1_rep	CDS	2903907	2903989	.	+	1	Parent=Os06t0156900-01
Chr06	irgsp1_rep	CDS	2904089	2904188	.	+	2	Parent=Os06t0156900-01
Chr06	irgsp1_rep	CDS	2905588	2905701	.	+	1	Parent=Os06t0156900-01
Chr06	irgsp1_rep	CDS	2906300	2906442	.	+	1	Parent=Os06t0156900-01
Chr06	irgsp1_rep	CDS	2906833	2906927	.	+	2	Parent=Os06t0156900-01
Chr06	irgsp1_rep	three_prime_UTR	2906928	2907302	.	+	.	Parent=Os06t0156900-01
Chr06	irgsp1_rep	mRNA	2908048	2910483	.	-	.	ID=Os06t0157000-01;Name=Os06t0157000-01;Locus_id=Os06g0157000;CGSNL Gene Symbol=GELP79;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 79;Oryzabase Gene Symbol Synonym(s)=OsGELP79;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 79;Note=Esterase%2C SGNH hydrolase-type domain containing protein.;Transcript_evidence=AK066113 (DDBJ%2C Best hit);ORF_evidence=B6TLP8 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087),Esterase%2C SGNH hydrolase-type (IPR013830),Esterase%2C SGNH hydrolase-type%2C subgroup (IPR013831);NIAS_FLcDNA=J013051I09;Oryzabase=11029;Expression=AK066113;TENOR=Os06t0157000-01;KEGG=Os06t0157000-01
Chr06	irgsp1_rep	five_prime_UTR	2910412	2910483	.	-	.	Parent=Os06t0157000-01
Chr06	irgsp1_rep	CDS	2910263	2910411	.	-	0	Parent=Os06t0157000-01
Chr06	irgsp1_rep	CDS	2910156	2910181	.	-	1	Parent=Os06t0157000-01
Chr06	irgsp1_rep	CDS	2909860	2910069	.	-	2	Parent=Os06t0157000-01
Chr06	irgsp1_rep	CDS	2909347	2909769	.	-	2	Parent=Os06t0157000-01
Chr06	irgsp1_rep	CDS	2908341	2908558	.	-	2	Parent=Os06t0157000-01
Chr06	irgsp1_rep	three_prime_UTR	2908048	2908340	.	-	.	Parent=Os06t0157000-01
Chr06	irgsp1_rep	mRNA	2909345	2910401	.	+	.	ID=Os06t0157125-00;Name=Os06t0157125-00;Locus_id=Os06g0157125;Note=Hypothetical protein.;Transcript_evidence=EU950608 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0157125-00
Chr06	irgsp1_rep	CDS	2909345	2909755	.	+	0	Parent=Os06t0157125-00
Chr06	irgsp1_rep	CDS	2909837	2909848	.	+	0	Parent=Os06t0157125-00
Chr06	irgsp1_rep	three_prime_UTR	2909849	2910062	.	+	.	Parent=Os06t0157125-00
Chr06	irgsp1_rep	three_prime_UTR	2910178	2910401	.	+	.	Parent=Os06t0157125-00
Chr06	irgsp1_rep	mRNA	2926823	2928474	.	+	.	ID=Os06t0157500-01;Name=Os06t0157500-01;Locus_id=Os06g0157500;RAP-DB Gene Symbol Synonym(s)=RFT1%2C FT-L 3%2C OsFTL3%2C FT-L3%2C RFT;RAP-DB Gene Name Synonym(s)=RICE FLOWERING-LOCUS T 1%2C Rice Flowering-locus T 1%2C RICE FLOWERING LOCUS T 1%2C FT-like gene 3;CGSNL Gene Symbol=RFT1;CGSNL Gene Name=RICE FLOWERING-LOCUS T 1;Oryzabase Gene Symbol Synonym(s)=FT-L 3%2C OsFTL3%2C FT-L3%2C RFT%2C OsRFT1;Oryzabase Gene Name Synonym(s)=Rice Flowering-locus T 1%2C RICE FLOWERING LOCUS T 1%2C FT-like gene 3%2C RFT;Note=Florigen%2C Flowering time%2C Long-day promotion;Transcript_evidence=AB062676;ORF_evidence=Q8VWH2;InterPro=Phosphatidylethanolamine-binding protein PEBP (IPR008914),Phosphatidylethanolamine-binding%2C conserved site (IPR001858);Manual Curation=October 1%2C 2014;Literature_PMID=24098411,12407188;Oryzabase=9620;TENOR=Os06t0157500-00
Chr06	irgsp1_rep	five_prime_UTR	2926823	2927079	.	+	.	Parent=Os06t0157500-01
Chr06	irgsp1_rep	CDS	2927080	2927283	.	+	0	Parent=Os06t0157500-01
Chr06	irgsp1_rep	CDS	2927431	2927492	.	+	0	Parent=Os06t0157500-01
Chr06	irgsp1_rep	CDS	2927606	2927646	.	+	1	Parent=Os06t0157500-01
Chr06	irgsp1_rep	CDS	2928173	2928402	.	+	2	Parent=Os06t0157500-01
Chr06	irgsp1_rep	three_prime_UTR	2928403	2928474	.	+	.	Parent=Os06t0157500-01
Chr06	irgsp1_rep	mRNA	2940004	2942452	.	+	.	ID=Os06t0157700-01;Name=Os06t0157700-01;Locus_id=Os06g0157700;RAP-DB Gene Symbol Synonym(s)=HD3A%2C Hd3a%2C FT%2C qHD3(t)*%2C FT-L 2%2C OsFTL2%2C FT-L2%2C FTL2;RAP-DB Gene Name Synonym(s)=HEADING DATE 3A%2C heading date 3A%2C Heading date-3a%2C Heading date (QTL)-3(t)%2C Flowering locus T%2C FT-like gene 2;CGSNL Gene Symbol=HD3A;CGSNL Gene Name=HEADING DATE 3A;Oryzabase Gene Symbol Synonym(s)=Hd3a%2C FT%2C qHD3(t)*%2C FT-L 2%2C OsFTL2%2C FT-L2%2C FTL2%2C OsHd3a;Oryzabase Gene Name Synonym(s)=heading date 3A%2C Heading date-3a%2C Heading date (QTL)-3(t)%2C Flowering locus T%2C FT-like gene 2;Note=Florigen%2C Heading date;Transcript_evidence=AB052943 (Genbank),AB052944 (Genbank);ORF_evidence=Q93WM7 (UniProt),Q93WI9 (UniProt);InterPro=Phosphatidylethanolamine-binding%2C conserved site (IPR001858),Phosphatidylethanolamine-binding protein PEBP (IPR008914);Manual Curation=May 8%2C 2009;Literature_PMID=12407188,17446351,20543848;Oryzabase=7216;TENOR=Os06t0157700-00
Chr06	irgsp1_rep	five_prime_UTR	2940004	2940155	.	+	.	Parent=Os06t0157700-01
Chr06	irgsp1_rep	CDS	2940156	2940362	.	+	0	Parent=Os06t0157700-01
Chr06	irgsp1_rep	CDS	2940525	2940586	.	+	0	Parent=Os06t0157700-01
Chr06	irgsp1_rep	CDS	2940720	2940760	.	+	1	Parent=Os06t0157700-01
Chr06	irgsp1_rep	CDS	2942068	2942297	.	+	2	Parent=Os06t0157700-01
Chr06	irgsp1_rep	three_prime_UTR	2942298	2942452	.	+	.	Parent=Os06t0157700-01
Chr06	irgsp1_rep	mRNA	2945585	2946273	.	+	.	ID=Os06t0157800-01;Name=Os06t0157800-01;Locus_id=Os06g0157800;Note=Similar to CG7224 (Fragment).;Transcript_evidence=AK121504 (DDBJ%2C Best hit);ORF_evidence=NP_001143165.1 (RefSeq);InterPro=Protein of unknown function DUF1674 (IPR012875);NIAS_FLcDNA=J033022L20;Expression=AK121504;TENOR=Os06t0157800-01;KEGG=Os06t0157800-01
Chr06	irgsp1_rep	five_prime_UTR	2945585	2945659	.	+	.	Parent=Os06t0157800-01
Chr06	irgsp1_rep	CDS	2945660	2946028	.	+	0	Parent=Os06t0157800-01
Chr06	irgsp1_rep	three_prime_UTR	2946029	2946273	.	+	.	Parent=Os06t0157800-01
Chr06	irgsp1_rep	mRNA	2947702	2948085	.	+	.	ID=Os06t0157900-00;Name=Os06t0157900-00;Locus_id=Os06g0157900;Oryzabase Gene Symbol Synonym(s)=OsLTP1.5%2C OsLtpI.5;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein 1.5%2C lipid transfer protein 1.5%2C type 1 non-specific lipid transfer protein 5;Note=Similar to Non-specific lipid-transfer protein.;Transcript_evidence=AK358528 (DDBJ);ORF_evidence=A2Y9K5 (UniProt);GO=Biological Process: lipid transport (GO:0006869),Molecular Function: lipid binding (GO:0008289);InterPro=Plant lipid transfer protein/Par allergen (IPR000528),Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);Oryzabase=13514;TENOR=Os06t0157900-00
Chr06	irgsp1_rep	five_prime_UTR	2947702	2947710	.	+	.	Parent=Os06t0157900-00
Chr06	irgsp1_rep	CDS	2947711	2948085	.	+	0	Parent=Os06t0157900-00
Chr06	irgsp1_rep	mRNA	2949764	2957842	.	+	.	ID=Os06t0158000-01;Name=Os06t0158000-01;Locus_id=Os06g0158000;CGSNL Gene Symbol=LACS3;CGSNL Gene Name=LONG-CHAIN ACYL-COA SYNTHETASE 3;Oryzabase Gene Symbol Synonym(s)=OsLACS3;Oryzabase Gene Name Synonym(s)=long-chain acyl-CoA synthetase 3;Note=Similar to Acyl-CoA synthetase (EC 6.2.1.3).;Transcript_evidence=AK063337 (DDBJ%2C Best hit);ORF_evidence=NP_001147847.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873);NIAS_FLcDNA=001-114-A08;Oryzabase=23601;Expression=AK063337;TENOR=Os06t0158000-01;KEGG=Os06t0158000-01 (EC:6.2.1.3)
Chr06	irgsp1_rep	five_prime_UTR	2949764	2949875	.	+	.	Parent=Os06t0158000-01
Chr06	irgsp1_rep	CDS	2949876	2950006	.	+	0	Parent=Os06t0158000-01
Chr06	irgsp1_rep	CDS	2950144	2950210	.	+	1	Parent=Os06t0158000-01
Chr06	irgsp1_rep	CDS	2950450	2950539	.	+	0	Parent=Os06t0158000-01
Chr06	irgsp1_rep	CDS	2951517	2951573	.	+	0	Parent=Os06t0158000-01
Chr06	irgsp1_rep	CDS	2951692	2951740	.	+	0	Parent=Os06t0158000-01
Chr06	irgsp1_rep	CDS	2951942	2952018	.	+	2	Parent=Os06t0158000-01
Chr06	irgsp1_rep	CDS	2953784	2953823	.	+	0	Parent=Os06t0158000-01
Chr06	irgsp1_rep	CDS	2953917	2954011	.	+	2	Parent=Os06t0158000-01
Chr06	irgsp1_rep	CDS	2954182	2954206	.	+	0	Parent=Os06t0158000-01
Chr06	irgsp1_rep	CDS	2954318	2954349	.	+	2	Parent=Os06t0158000-01
Chr06	irgsp1_rep	CDS	2954452	2954562	.	+	0	Parent=Os06t0158000-01
Chr06	irgsp1_rep	CDS	2954642	2954729	.	+	0	Parent=Os06t0158000-01
Chr06	irgsp1_rep	CDS	2955283	2955349	.	+	2	Parent=Os06t0158000-01
Chr06	irgsp1_rep	CDS	2955579	2955654	.	+	1	Parent=Os06t0158000-01
Chr06	irgsp1_rep	CDS	2955767	2955884	.	+	0	Parent=Os06t0158000-01
Chr06	irgsp1_rep	CDS	2955996	2956241	.	+	2	Parent=Os06t0158000-01
Chr06	irgsp1_rep	CDS	2956340	2956479	.	+	2	Parent=Os06t0158000-01
Chr06	irgsp1_rep	CDS	2957064	2957246	.	+	0	Parent=Os06t0158000-01
Chr06	irgsp1_rep	CDS	2957339	2957458	.	+	0	Parent=Os06t0158000-01
Chr06	irgsp1_rep	CDS	2957594	2957629	.	+	0	Parent=Os06t0158000-01
Chr06	irgsp1_rep	three_prime_UTR	2957630	2957842	.	+	.	Parent=Os06t0158000-01
Chr06	irgsp1_rep	mRNA	2954169	2957458	.	-	.	ID=Os06t0158050-00;Name=Os06t0158050-00;Locus_id=Os06g0158050;Note=Hypothetical protein.;Transcript_evidence=BT024042 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0158050-00
Chr06	irgsp1_rep	five_prime_UTR	2957337	2957458	.	-	.	Parent=Os06t0158050-00
Chr06	irgsp1_rep	five_prime_UTR	2957111	2957244	.	-	.	Parent=Os06t0158050-00
Chr06	irgsp1_rep	CDS	2957076	2957110	.	-	0	Parent=Os06t0158050-00
Chr06	irgsp1_rep	CDS	2956338	2956491	.	-	1	Parent=Os06t0158050-00
Chr06	irgsp1_rep	CDS	2956178	2956246	.	-	0	Parent=Os06t0158050-00
Chr06	irgsp1_rep	three_prime_UTR	2955991	2956177	.	-	.	Parent=Os06t0158050-00
Chr06	irgsp1_rep	three_prime_UTR	2955749	2955879	.	-	.	Parent=Os06t0158050-00
Chr06	irgsp1_rep	three_prime_UTR	2955022	2955153	.	-	.	Parent=Os06t0158050-00
Chr06	irgsp1_rep	three_prime_UTR	2954641	2954724	.	-	.	Parent=Os06t0158050-00
Chr06	irgsp1_rep	three_prime_UTR	2954419	2954561	.	-	.	Parent=Os06t0158050-00
Chr06	irgsp1_rep	three_prime_UTR	2954169	2954311	.	-	.	Parent=Os06t0158050-00
Chr06	irgsp1_rep	mRNA	2959754	2963006	.	+	.	ID=Os06t0158100-00;Name=Os06t0158100-00;Locus_id=Os06g0158100;CGSNL Gene Symbol=WRKY113;CGSNL Gene Name=WRKY GENE 113;Oryzabase Gene Symbol Synonym(s)=OsWRKY113;Note=Similar to WRKY transcription factor 63.;Transcript_evidence=AY676932 (DDBJ%2C Best hit);ORF_evidence=A1C0L7 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=9218;Expression=AY676932;TENOR=Os06t0158100-00;KEGG=Os06t0158100-00
Chr06	irgsp1_rep	CDS	2959754	2960118	.	+	0	Parent=Os06t0158100-00
Chr06	irgsp1_rep	CDS	2961476	2961601	.	+	1	Parent=Os06t0158100-00
Chr06	irgsp1_rep	CDS	2962322	2963006	.	+	1	Parent=Os06t0158100-00
Chr06	irgsp1_rep	mRNA	2966371	2973156	.	+	.	ID=Os06t0158200-01;Name=Os06t0158200-01;Locus_id=Os06g0158200;Note=Sulfotransferase domain containing protein.;Transcript_evidence=AK121981 (DDBJ%2C Best hit);ORF_evidence=B9FRL5 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021),Molecular Function: sulfotransferase activity (GO:0008146);InterPro=Sulfotransferase (IPR005331);NIAS_FLcDNA=J033108M22;Expression=AK121981;TENOR=Os06t0158200-01;KEGG=Os06t0158200-01
Chr06	irgsp1_rep	five_prime_UTR	2966371	2966768	.	+	.	Parent=Os06t0158200-01
Chr06	irgsp1_rep	CDS	2966769	2966817	.	+	0	Parent=Os06t0158200-01
Chr06	irgsp1_rep	CDS	2967003	2967180	.	+	2	Parent=Os06t0158200-01
Chr06	irgsp1_rep	CDS	2967264	2967335	.	+	1	Parent=Os06t0158200-01
Chr06	irgsp1_rep	CDS	2967857	2968181	.	+	1	Parent=Os06t0158200-01
Chr06	irgsp1_rep	three_prime_UTR	2968182	2969089	.	+	.	Parent=Os06t0158200-01
Chr06	irgsp1_rep	three_prime_UTR	2970019	2970509	.	+	.	Parent=Os06t0158200-01
Chr06	irgsp1_rep	three_prime_UTR	2971031	2971083	.	+	.	Parent=Os06t0158200-01
Chr06	irgsp1_rep	three_prime_UTR	2971197	2971274	.	+	.	Parent=Os06t0158200-01
Chr06	irgsp1_rep	three_prime_UTR	2971369	2971488	.	+	.	Parent=Os06t0158200-01
Chr06	irgsp1_rep	three_prime_UTR	2971787	2971951	.	+	.	Parent=Os06t0158200-01
Chr06	irgsp1_rep	three_prime_UTR	2972671	2973156	.	+	.	Parent=Os06t0158200-01
Chr06	irgsp1_rep	mRNA	2973685	2979467	.	-	.	ID=Os06t0158300-01;Name=Os06t0158300-01;Locus_id=Os06g0158300;Note=NB-ARC domain containing protein.;Transcript_evidence=AK073612 (DDBJ%2C Best hit);ORF_evidence=C0LHH5 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J033048O03;Oryzabase=14954;Expression=AK073612;TENOR=Os06t0158300-01;KEGG=Os06t0158300-01
Chr06	irgsp1_rep	five_prime_UTR	2979068	2979467	.	-	.	Parent=Os06t0158300-01
Chr06	irgsp1_rep	five_prime_UTR	2978895	2978985	.	-	.	Parent=Os06t0158300-01
Chr06	irgsp1_rep	five_prime_UTR	2977721	2977982	.	-	.	Parent=Os06t0158300-01
Chr06	irgsp1_rep	CDS	2976831	2977720	.	-	0	Parent=Os06t0158300-01
Chr06	irgsp1_rep	CDS	2973885	2975859	.	-	1	Parent=Os06t0158300-01
Chr06	irgsp1_rep	three_prime_UTR	2973685	2973884	.	-	.	Parent=Os06t0158300-01
Chr06	irgsp1_rep	mRNA	2980288	2984308	.	-	.	ID=Os06t0158400-01;Name=Os06t0158400-01;Locus_id=Os06g0158400;Note=Hypothetical conserved gene.;Transcript_evidence=AK287627 (DDBJ%2C Best hit);ORF_evidence=NP_001174610.1 (RefSeq);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);NIAS_FLcDNA=J065071E20;Oryzabase=14955;TENOR=Os06t0158400-01;KEGG=Os06t0158400-01
Chr06	irgsp1_rep	five_prime_UTR	2984290	2984308	.	-	.	Parent=Os06t0158400-01
Chr06	irgsp1_rep	CDS	2983342	2984289	.	-	0	Parent=Os06t0158400-01
Chr06	irgsp1_rep	CDS	2982392	2982412	.	-	0	Parent=Os06t0158400-01
Chr06	irgsp1_rep	three_prime_UTR	2980288	2982391	.	-	.	Parent=Os06t0158400-01
Chr06	irgsp1_rep	mRNA	2985133	2990867	.	-	.	ID=Os06t0158500-01;Name=Os06t0158500-01;Locus_id=Os06g0158500;Oryzabase Gene Name Synonym(s)=NBS-LRR-type disease resistance protein;Note=Conserved hypothetical protein.;Transcript_evidence=AK101823 (DDBJ%2C Best hit);ORF_evidence=B8B319 (UniProt);NIAS_FLcDNA=J033067K01;Oryzabase=14956;TENOR=Os06t0158500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	2990778	2990867	.	-	.	Parent=Os06t0158500-01
Chr06	irgsp1_rep	CDS	2990587	2990777	.	-	0	Parent=Os06t0158500-01
Chr06	irgsp1_rep	CDS	2990464	2990491	.	-	1	Parent=Os06t0158500-01
Chr06	irgsp1_rep	three_prime_UTR	2988172	2990463	.	-	.	Parent=Os06t0158500-01
Chr06	irgsp1_rep	three_prime_UTR	2985133	2987477	.	-	.	Parent=Os06t0158500-01
Chr06	irgsp1_rep	mRNA	2992144	2995594	.	-	.	ID=Os06t0158600-01;Name=Os06t0158600-01;Locus_id=Os06g0158600;Note=Protein of unknown function DUF652 family protein.;Transcript_evidence=AK059986 (DDBJ%2C Best hit),AK101378 (DDBJ%2C Best hit);ORF_evidence=B4FS24 (UniProt);InterPro=Nucleotide binding protein%2C PINc (IPR006596),Protein of unknown function DUF652 (IPR006984);NIAS_FLcDNA=006-212-G11,J033036C08;Expression=AK059986;TENOR=Os06t0158600-01;KEGG=Os06t0158600-01
Chr06	irgsp1_rep	five_prime_UTR	2995257	2995594	.	-	.	Parent=Os06t0158600-01
Chr06	irgsp1_rep	CDS	2995183	2995256	.	-	0	Parent=Os06t0158600-01
Chr06	irgsp1_rep	CDS	2995035	2995100	.	-	1	Parent=Os06t0158600-01
Chr06	irgsp1_rep	CDS	2994832	2994937	.	-	1	Parent=Os06t0158600-01
Chr06	irgsp1_rep	CDS	2994028	2994070	.	-	0	Parent=Os06t0158600-01
Chr06	irgsp1_rep	CDS	2993634	2993706	.	-	2	Parent=Os06t0158600-01
Chr06	irgsp1_rep	CDS	2993315	2993402	.	-	1	Parent=Os06t0158600-01
Chr06	irgsp1_rep	CDS	2992602	2992658	.	-	0	Parent=Os06t0158600-01
Chr06	irgsp1_rep	CDS	2992440	2992518	.	-	0	Parent=Os06t0158600-01
Chr06	irgsp1_rep	CDS	2992327	2992340	.	-	2	Parent=Os06t0158600-01
Chr06	irgsp1_rep	three_prime_UTR	2992144	2992326	.	-	.	Parent=Os06t0158600-01
Chr06	irgsp1_rep	mRNA	2995786	2997965	.	+	.	ID=Os06t0158700-01;Name=Os06t0158700-01;Locus_id=Os06g0158700;Note=Glyoxalase/bleomycin resistance protein/dioxygenase domain containing protein.;Transcript_evidence=AK103202 (DDBJ%2C Best hit);ORF_evidence=NP_001147921.1 (RefSeq);NIAS_FLcDNA=J033122C11;Expression=AK103202;TENOR=Os06t0158700-01;KEGG=Os06t0158700-01
Chr06	irgsp1_rep	five_prime_UTR	2995786	2995827	.	+	.	Parent=Os06t0158700-01
Chr06	irgsp1_rep	CDS	2995828	2996012	.	+	0	Parent=Os06t0158700-01
Chr06	irgsp1_rep	CDS	2997524	2997656	.	+	1	Parent=Os06t0158700-01
Chr06	irgsp1_rep	CDS	2997745	2997801	.	+	0	Parent=Os06t0158700-01
Chr06	irgsp1_rep	three_prime_UTR	2997802	2997965	.	+	.	Parent=Os06t0158700-01
Chr06	irgsp1_rep	mRNA	2999148	3000424	.	+	.	ID=Os06t0158800-01;Name=Os06t0158800-01;Locus_id=Os06g0158800;Oryzabase Gene Symbol Synonym(s)=OsSTA169;Note=Protein of unknown function DUF1191 family protein.;Transcript_evidence=AK070453 (DDBJ%2C Best hit);ORF_evidence=A2Y9L3 (UniProt);InterPro=Protein of unknown function DUF1191 (IPR010605);NIAS_FLcDNA=J023048N12;Oryzabase=19453;Expression=AK070453;TENOR=Os06t0158800-01;KEGG=Os06t0158800-01
Chr06	irgsp1_rep	five_prime_UTR	2999148	2999276	.	+	.	Parent=Os06t0158800-01
Chr06	irgsp1_rep	CDS	2999277	3000203	.	+	0	Parent=Os06t0158800-01
Chr06	irgsp1_rep	three_prime_UTR	3000204	3000424	.	+	.	Parent=Os06t0158800-01
Chr06	irgsp1_rep	mRNA	3001104	3002157	.	+	.	ID=Os06t0158850-01;Name=Os06t0158850-01;Locus_id=Os06g0158850;Note=Non-protein coding transcript.;Transcript_evidence=AK241360 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065151E06;TENOR=Os06t0158850-01
Chr06	irgsp1_rep	exon	3001104	3002157	.	+	.	Parent=Os06t0158850-01
Chr06	irgsp1_rep	mRNA	3001438	3009777	.	-	.	ID=Os06t0158900-00;Name=Os06t0158900-00;Locus_id=Os06g0158900;CGSNL Gene Symbol=MRP15;CGSNL Gene Name=MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 15;Oryzabase Gene Symbol Synonym(s)=OsABCC15%2C OsMRP15;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCC subgroup member 15%2C multidrug resistance-associated protein 15;Note=Similar to Multidrug-resistance associated protein 3.;Transcript_evidence=AK368184 (DDBJ);ORF_evidence=Q6J0P5 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);Oryzabase=11966;TENOR=Os06t0158900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	3009748	3009777	.	-	.	Parent=Os06t0158900-00
Chr06	irgsp1_rep	CDS	3009732	3009747	.	-	0	Parent=Os06t0158900-00
Chr06	irgsp1_rep	CDS	3007226	3009261	.	-	2	Parent=Os06t0158900-00
Chr06	irgsp1_rep	CDS	3006030	3006350	.	-	0	Parent=Os06t0158900-00
Chr06	irgsp1_rep	CDS	3005863	3005949	.	-	0	Parent=Os06t0158900-00
Chr06	irgsp1_rep	CDS	3004753	3005349	.	-	0	Parent=Os06t0158900-00
Chr06	irgsp1_rep	CDS	3004495	3004659	.	-	0	Parent=Os06t0158900-00
Chr06	irgsp1_rep	CDS	3004055	3004349	.	-	0	Parent=Os06t0158900-00
Chr06	irgsp1_rep	CDS	3003373	3003587	.	-	2	Parent=Os06t0158900-00
Chr06	irgsp1_rep	CDS	3002977	3003282	.	-	0	Parent=Os06t0158900-00
Chr06	irgsp1_rep	CDS	3002667	3002730	.	-	0	Parent=Os06t0158900-00
Chr06	irgsp1_rep	CDS	3001917	3002156	.	-	2	Parent=Os06t0158900-00
Chr06	irgsp1_rep	CDS	3001494	3001603	.	-	2	Parent=Os06t0158900-00
Chr06	irgsp1_rep	three_prime_UTR	3001438	3001493	.	-	.	Parent=Os06t0158900-00
Chr06	irgsp1_rep	mRNA	3035412	3039390	.	+	.	ID=Os06t0159400-01;Name=Os06t0159400-01;Locus_id=Os06g0159400;Oryzabase Gene Symbol Synonym(s)=OsPUB65;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 65%2C U-box protein 65;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK101286 (DDBJ%2C Best hit);ORF_evidence=A2Y9L5 (UniProt);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=U box domain (IPR003613),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J033033F04;Oryzabase=17856;Expression=AK101286;TENOR=Os06t0159400-01;KEGG=Os06t0159400-01
Chr06	irgsp1_rep	five_prime_UTR	3035412	3035563	.	+	.	Parent=Os06t0159400-01
Chr06	irgsp1_rep	CDS	3035564	3035785	.	+	0	Parent=Os06t0159400-01
Chr06	irgsp1_rep	CDS	3035867	3036146	.	+	0	Parent=Os06t0159400-01
Chr06	irgsp1_rep	CDS	3037406	3037491	.	+	2	Parent=Os06t0159400-01
Chr06	irgsp1_rep	CDS	3037622	3037845	.	+	0	Parent=Os06t0159400-01
Chr06	irgsp1_rep	CDS	3037919	3037979	.	+	1	Parent=Os06t0159400-01
Chr06	irgsp1_rep	CDS	3038642	3038836	.	+	0	Parent=Os06t0159400-01
Chr06	irgsp1_rep	CDS	3038989	3039213	.	+	0	Parent=Os06t0159400-01
Chr06	irgsp1_rep	three_prime_UTR	3039214	3039390	.	+	.	Parent=Os06t0159400-01
Chr06	irgsp1_rep	mRNA	3040365	3041231	.	-	.	ID=Os06t0159450-00;Name=Os06t0159450-00;Locus_id=Os06g0159450;Oryzabase Gene Symbol Synonym(s)=H3R-11;Oryzabase Gene Name Synonym(s)=H3 histone H3R-11;Note=Similar to Histone H3.;Transcript_evidence=FP099648 (DDBJ);ORF_evidence=B9FRM3 (UniProt);Oryzabase=13741;TENOR=Os06t0159450-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	3040794	3041231	.	-	0	Parent=Os06t0159450-00
Chr06	irgsp1_rep	three_prime_UTR	3040365	3040793	.	-	.	Parent=Os06t0159450-00
Chr06	irgsp1_rep	mRNA	3042190	3046129	.	+	.	ID=Os06t0159600-01;Name=Os06t0159600-01;Locus_id=Os06g0159600;Oryzabase Gene Symbol Synonym(s)=OsPUB64%2C PUB64%2C OsHOP1%2C HOP1;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 64%2C U-box protein 64%2C Hsp70-Hsp90 organizing protein 1;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK068486 (DDBJ%2C Best hit);ORF_evidence=B9FRM1 (UniProt);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=U box domain (IPR003613),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J013153D05;Oryzabase=17855;Expression=AK068486;TENOR=Os06t0159600-01;KEGG=Os06t0159600-01
Chr06	irgsp1_rep	five_prime_UTR	3042190	3042258	.	+	.	Parent=Os06t0159600-01
Chr06	irgsp1_rep	CDS	3042259	3042480	.	+	0	Parent=Os06t0159600-01
Chr06	irgsp1_rep	CDS	3042565	3042868	.	+	0	Parent=Os06t0159600-01
Chr06	irgsp1_rep	CDS	3043709	3043794	.	+	2	Parent=Os06t0159600-01
Chr06	irgsp1_rep	CDS	3043932	3044155	.	+	0	Parent=Os06t0159600-01
Chr06	irgsp1_rep	CDS	3044233	3044293	.	+	1	Parent=Os06t0159600-01
Chr06	irgsp1_rep	CDS	3044781	3044876	.	+	0	Parent=Os06t0159600-01
Chr06	irgsp1_rep	CDS	3045456	3045611	.	+	0	Parent=Os06t0159600-01
Chr06	irgsp1_rep	CDS	3045819	3045995	.	+	0	Parent=Os06t0159600-01
Chr06	irgsp1_rep	three_prime_UTR	3045996	3046129	.	+	.	Parent=Os06t0159600-01
Chr06	irgsp1_rep	mRNA	3042255	3043476	.	+	.	ID=Os06t0159600-02;Name=Os06t0159600-02;Locus_id=Os06g0159600;Oryzabase Gene Symbol Synonym(s)=OsPUB64%2C PUB64%2C OsHOP1%2C HOP1;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 64%2C U-box protein 64%2C Hsp70-Hsp90 organizing protein 1;Note=Hypothetical conserved gene.;Transcript_evidence=AK108446 (DDBJ%2C Best hit);ORF_evidence=Q5VMX0 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-143-C04;Oryzabase=17855;Expression=AK108446;TENOR=Os06t0159600-02;KEGG=Os06t0159600-02
Chr06	irgsp1_rep	five_prime_UTR	3042255	3042258	.	+	.	Parent=Os06t0159600-02
Chr06	irgsp1_rep	CDS	3042259	3042876	.	+	0	Parent=Os06t0159600-02
Chr06	irgsp1_rep	three_prime_UTR	3042877	3043476	.	+	.	Parent=Os06t0159600-02
Chr06	irgsp1_rep	mRNA	3046560	3047021	.	+	.	ID=Os06t0159700-00;Name=Os06t0159700-00;Locus_id=Os06g0159700;Note=Similar to histone H3.;Transcript_evidence=BT018930 (DDBJ);ORF_evidence=XP_002299242.1 (RefSeq);TENOR=Os06t0159700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	3046560	3047021	.	+	0	Parent=Os06t0159700-00
Chr06	irgsp1_rep	mRNA	3046565	3046963	.	-	.	ID=Os06t0159725-00;Name=Os06t0159725-00;Locus_id=Os06g0159725;Note=Similar to histone H3.;Transcript_evidence=A2XHJ3 (UniProt);ORF_evidence=XP_002299242.1 (RefSeq);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H3 (IPR000164),Histone core (IPR007125),Histone-fold (IPR009072);TENOR=Os06t0159725-00
Chr06	irgsp1_rep	CDS	3046565	3046963	.	-	0	Parent=Os06t0159725-00
Chr06	irgsp1_rep	mRNA	3048554	3049686	.	-	.	ID=Os06t0159750-00;Name=Os06t0159750-00;Locus_id=Os06g0159750;Note=Hypothetical conserved gene.;Transcript_evidence=EU964122 (DDBJ);ORF_evidence=Q01I89 (UniProt);TENOR=Os06t0159750-00;KEGG=Os06t0159750-00
Chr06	irgsp1_rep	five_prime_UTR	3049305	3049686	.	-	.	Parent=Os06t0159750-00
Chr06	irgsp1_rep	five_prime_UTR	3049172	3049194	.	-	.	Parent=Os06t0159750-00
Chr06	irgsp1_rep	CDS	3048554	3049171	.	-	0	Parent=Os06t0159750-00
Chr06	irgsp1_rep	mRNA	3051248	3055005	.	+	.	ID=Os06t0159900-01;Name=Os06t0159900-01;Locus_id=Os06g0159900;Oryzabase Gene Symbol Synonym(s)=OsPUB63%2C PUB63;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 63%2C U-box protein 63;Note=Similar to Arm repeat containing protein.;Transcript_evidence=AK063418 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=U box domain (IPR003613),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=001-115-B12;Oryzabase=17854;Expression=AK063418;TENOR=Os06t0159900-01;KEGG=Os06t0159900-01
Chr06	irgsp1_rep	five_prime_UTR	3051248	3051339	.	+	.	Parent=Os06t0159900-01
Chr06	irgsp1_rep	CDS	3051340	3051534	.	+	0	Parent=Os06t0159900-01
Chr06	irgsp1_rep	CDS	3051866	3052124	.	+	0	Parent=Os06t0159900-01
Chr06	irgsp1_rep	CDS	3052931	3052988	.	+	2	Parent=Os06t0159900-01
Chr06	irgsp1_rep	CDS	3053062	3053113	.	+	1	Parent=Os06t0159900-01
Chr06	irgsp1_rep	CDS	3053609	3053686	.	+	0	Parent=Os06t0159900-01
Chr06	irgsp1_rep	CDS	3054020	3054196	.	+	0	Parent=Os06t0159900-01
Chr06	irgsp1_rep	CDS	3054602	3054814	.	+	0	Parent=Os06t0159900-01
Chr06	irgsp1_rep	three_prime_UTR	3054815	3055005	.	+	.	Parent=Os06t0159900-01
Chr06	irgsp1_rep	mRNA	3055212	3055642	.	+	.	ID=Os06t0160000-00;Name=Os06t0160000-00;Locus_id=Os06g0160000;Note=Hypothetical protein.;Transcript_evidence=BT016934 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0160000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	3055212	3055640	.	+	0	Parent=Os06t0160000-00
Chr06	irgsp1_rep	three_prime_UTR	3055641	3055642	.	+	.	Parent=Os06t0160000-00
Chr06	irgsp1_rep	mRNA	3055212	3055622	.	-	.	ID=Os06t0160001-00;Name=Os06t0160001-00;Locus_id=Os06g0160001;Oryzabase Gene Symbol Synonym(s)=H3;Oryzabase Gene Name Synonym(s)=H3 histone%2C Histone 3;Note=Histone H3.;Transcript_evidence=A2Y533 (UniProt);ORF_evidence=A2Y533 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H3 (IPR000164),Histone core (IPR007125),Histone-fold (IPR009072);Oryzabase=15776;TENOR=Os06t0160001-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	3055212	3055622	.	-	0	Parent=Os06t0160001-00
Chr06	irgsp1_rep	mRNA	3055907	3057961	.	+	.	ID=Os06t0160100-00;Name=Os06t0160100-00;Locus_id=Os06g0160100;Note=Similar to Histones H3 and H4 (ISS).;Transcript_evidence=BT037227 (DDBJ);ORF_evidence=XP_003082036.1 (RefSeq);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H3 (IPR000164),Histone core (IPR007125),Histone-fold (IPR009072);TENOR=Os06t0160100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	3055907	3056581	.	+	0	Parent=Os06t0160100-00
Chr06	irgsp1_rep	three_prime_UTR	3056582	3056666	.	+	.	Parent=Os06t0160100-00
Chr06	irgsp1_rep	three_prime_UTR	3057832	3057961	.	+	.	Parent=Os06t0160100-00
Chr06	irgsp1_rep	mRNA	3057083	3059016	.	-	.	ID=Os06t0160200-01;Name=Os06t0160200-01;Locus_id=Os06g0160200;CGSNL Gene Symbol=GELP80;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 80;Oryzabase Gene Symbol Synonym(s)=OsGELP80;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 80;Note=Similar to Lanatoside 15'-O-acetylesterase precursor.;Transcript_evidence=AK073443 (DDBJ%2C Best hit);ORF_evidence=O82681 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=J033044K03;Oryzabase=11030;Expression=AK073443;TENOR=Os06t0160200-01;KEGG=Os06t0160200-01
Chr06	irgsp1_rep	five_prime_UTR	3058968	3059016	.	-	.	Parent=Os06t0160200-01
Chr06	irgsp1_rep	CDS	3058733	3058967	.	-	0	Parent=Os06t0160200-01
Chr06	irgsp1_rep	CDS	3058427	3058639	.	-	2	Parent=Os06t0160200-01
Chr06	irgsp1_rep	CDS	3058063	3058214	.	-	2	Parent=Os06t0160200-01
Chr06	irgsp1_rep	CDS	3057689	3057959	.	-	0	Parent=Os06t0160200-01
Chr06	irgsp1_rep	CDS	3057310	3057578	.	-	2	Parent=Os06t0160200-01
Chr06	irgsp1_rep	three_prime_UTR	3057083	3057309	.	-	.	Parent=Os06t0160200-01
Chr06	irgsp1_rep	mRNA	3060007	3063606	.	-	.	ID=Os06t0160400-01;Name=Os06t0160400-01;Locus_id=Os06g0160400;CGSNL Gene Symbol=HGW;CGSNL Gene Name=HEADING AND GRAIN WEIGHT;Oryzabase Gene Symbol Synonym(s)=OsHGW;Oryzabase Gene Name Synonym(s)=heading and grain weight%2C heading date- and grain weight-related protein;Note=Similar to Proline-rich cell wall protein-like.;Transcript_evidence=AK121877 (DDBJ%2C Best hit);ORF_evidence=B6TN35 (UniProt);NIAS_FLcDNA=J033104I02;Oryzabase=15163;Expression=AK121877;TENOR=Os06t0160400-01;KEGG=Os06t0160400-01
Chr06	irgsp1_rep	five_prime_UTR	3063464	3063606	.	-	.	Parent=Os06t0160400-01
Chr06	irgsp1_rep	CDS	3063241	3063463	.	-	0	Parent=Os06t0160400-01
Chr06	irgsp1_rep	CDS	3062249	3062295	.	-	2	Parent=Os06t0160400-01
Chr06	irgsp1_rep	CDS	3061111	3061302	.	-	0	Parent=Os06t0160400-01
Chr06	irgsp1_rep	CDS	3060701	3060803	.	-	0	Parent=Os06t0160400-01
Chr06	irgsp1_rep	CDS	3060238	3060368	.	-	2	Parent=Os06t0160400-01
Chr06	irgsp1_rep	three_prime_UTR	3060007	3060237	.	-	.	Parent=Os06t0160400-01
Chr06	irgsp1_rep	mRNA	3067795	3068713	.	-	.	ID=Os06t0160450-00;Name=Os06t0160450-00;Locus_id=Os06g0160450;Note=Hypothetical protein.;Transcript_evidence=EU967653 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0160450-00
Chr06	irgsp1_rep	five_prime_UTR	3068617	3068713	.	-	.	Parent=Os06t0160450-00
Chr06	irgsp1_rep	five_prime_UTR	3068242	3068565	.	-	.	Parent=Os06t0160450-00
Chr06	irgsp1_rep	CDS	3067795	3068241	.	-	0	Parent=Os06t0160450-00
Chr06	irgsp1_rep	mRNA	3074387	3077781	.	-	.	ID=Os06t0160600-00;Name=Os06t0160600-00;Locus_id=Os06g0160600;Note=Hypothetical conserved gene.;Transcript_evidence=EU957886 (DDBJ);ORF_evidence=NP_001056880.1 (RefSeq);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);TENOR=Os06t0160600-00;KEGG=Os06t0160600-00
Chr06	irgsp1_rep	CDS	3077499	3077781	.	-	0	Parent=Os06t0160600-00
Chr06	irgsp1_rep	CDS	3074388	3075469	.	-	2	Parent=Os06t0160600-00
Chr06	irgsp1_rep	three_prime_UTR	3074387	3074387	.	-	.	Parent=Os06t0160600-00
Chr06	irgsp1_rep	mRNA	3079296	3086808	.	-	.	ID=Os06t0160700-01;Name=Os06t0160700-01;Locus_id=Os06g0160700;RAP-DB Gene Symbol Synonym(s)=SSI%2C OsSSI%2C SSS 1%2C SSS1%2C SS1;RAP-DB Gene Name Synonym(s)=SOLUBLE STARCH SYNTHASE I%2C Starch synthase-I%2C "Soluble starch synthase 1%2C chloroplastic/amyloplastic"%2C Starch synthase I;CGSNL Gene Symbol=SSI;CGSNL Gene Name=SOLUBLE STARCH SYNTHASE I;Oryzabase Gene Symbol Synonym(s)=OsSSI%2C SSS 1%2C SSS1%2C SS1%2C OsSS1;Oryzabase Gene Name Synonym(s)=Starch synthase-I%2C "Soluble starch synthase 1%2C chloroplastic/amyloplastic"%2C Starch synthase I;Note=Starch synthase%2C Starch biosynthesis;Transcript_evidence=D16202,AK109458;ORF_evidence=Q0DEC8,B7F2B2;GO=Biological Process: biosynthetic process (GO:0009058),Biological Process: glucan biosynthetic process (GO:0009250),Molecular Function: starch synthase activity (GO:0009011);InterPro=Glycogen/starch synthase%2C ADP-glucose type (IPR011835),Starch synthase%2C catalytic domain (IPR013534),Glycosyl transferase%2C family 1 (IPR001296);NIAS_FLcDNA=001-125-C03;Manual Curation=March 10%2C 2010;Literature_PMID=7518089,7610165,15232694,21595523;Oryzabase=6622;Expression=AK109458;TENOR=Os06t0160700-01;KEGG=Os06t0160700-01 (EC:2.4.1.21)
Chr06	irgsp1_rep	five_prime_UTR	3086617	3086808	.	-	.	Parent=Os06t0160700-01
Chr06	irgsp1_rep	CDS	3086319	3086616	.	-	0	Parent=Os06t0160700-01
Chr06	irgsp1_rep	CDS	3085055	3085410	.	-	2	Parent=Os06t0160700-01
Chr06	irgsp1_rep	CDS	3084320	3084397	.	-	0	Parent=Os06t0160700-01
Chr06	irgsp1_rep	CDS	3084108	3084232	.	-	0	Parent=Os06t0160700-01
Chr06	irgsp1_rep	CDS	3083191	3083272	.	-	1	Parent=Os06t0160700-01
Chr06	irgsp1_rep	CDS	3082921	3083094	.	-	0	Parent=Os06t0160700-01
Chr06	irgsp1_rep	CDS	3082649	3082730	.	-	0	Parent=Os06t0160700-01
Chr06	irgsp1_rep	CDS	3082461	3082552	.	-	2	Parent=Os06t0160700-01
Chr06	irgsp1_rep	CDS	3082288	3082350	.	-	0	Parent=Os06t0160700-01
Chr06	irgsp1_rep	CDS	3082120	3082209	.	-	0	Parent=Os06t0160700-01
Chr06	irgsp1_rep	CDS	3081332	3081456	.	-	0	Parent=Os06t0160700-01
Chr06	irgsp1_rep	CDS	3081099	3081207	.	-	1	Parent=Os06t0160700-01
Chr06	irgsp1_rep	CDS	3080965	3081017	.	-	0	Parent=Os06t0160700-01
Chr06	irgsp1_rep	CDS	3080790	3080829	.	-	1	Parent=Os06t0160700-01
Chr06	irgsp1_rep	CDS	3079801	3079959	.	-	0	Parent=Os06t0160700-01
Chr06	irgsp1_rep	three_prime_UTR	3079296	3079800	.	-	.	Parent=Os06t0160700-01
Chr06	irgsp1_rep	mRNA	3090132	3090825	.	-	.	ID=Os06t0160800-01;Name=Os06t0160800-01;Locus_id=Os06g0160800;Note=Conserved hypothetical protein.;Transcript_evidence=AK063063 (DDBJ%2C Best hit);ORF_evidence=Q5WA89 (UniProt);NIAS_FLcDNA=001-110-F12;Expression=AK063063;TENOR=Os06t0160800-01;KEGG=Os06t0160800-01
Chr06	irgsp1_rep	five_prime_UTR	3090707	3090825	.	-	.	Parent=Os06t0160800-01
Chr06	irgsp1_rep	CDS	3090467	3090706	.	-	0	Parent=Os06t0160800-01
Chr06	irgsp1_rep	CDS	3090308	3090445	.	-	0	Parent=Os06t0160800-01
Chr06	irgsp1_rep	three_prime_UTR	3090132	3090307	.	-	.	Parent=Os06t0160800-01
Chr06	irgsp1_rep	mRNA	3090168	3090825	.	-	.	ID=Os06t0160800-02;Name=Os06t0160800-02;Locus_id=Os06g0160800;Note=Hypothetical conserved gene.;Transcript_evidence=AK069662 (DDBJ%2C Best hit);ORF_evidence=A2Y9M5 (UniProt);NIAS_FLcDNA=J023033I08;Expression=AK069662;TENOR=Os06t0160800-02;KEGG=Os06t0160800-02
Chr06	irgsp1_rep	five_prime_UTR	3090707	3090825	.	-	.	Parent=Os06t0160800-02
Chr06	irgsp1_rep	CDS	3090308	3090706	.	-	0	Parent=Os06t0160800-02
Chr06	irgsp1_rep	three_prime_UTR	3090168	3090307	.	-	.	Parent=Os06t0160800-02
Chr06	irgsp1_rep	mRNA	3093918	3095987	.	+	.	ID=Os06t0161100-00;Name=Os06t0161100-00;Locus_id=Os06g0161100;Note=Protein of unknown function DUF569 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3B8M3 (UniProt);InterPro=Protein of unknown function DUF569 (IPR007679),Actin cross-linking (IPR008999);TENOR=Os06t0161100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	3093918	3094400	.	+	0	Parent=Os06t0161100-00
Chr06	irgsp1_rep	CDS	3094946	3095204	.	+	0	Parent=Os06t0161100-00
Chr06	irgsp1_rep	CDS	3095644	3095987	.	+	2	Parent=Os06t0161100-00
Chr06	irgsp1_rep	mRNA	3102940	3107487	.	+	.	ID=Os06t0161300-01;Name=Os06t0161300-01;Locus_id=Os06g0161300;Oryzabase Gene Symbol Synonym(s)=OsFbox297%2C Os_F0442;Oryzabase Gene Name Synonym(s)=F-box protein 297;Note=Hypothetical conserved gene.;Transcript_evidence=AK242901 (DDBJ%2C Best hit);ORF_evidence=Q5WA85 (UniProt);InterPro=FBD (IPR013596);NIAS_FLcDNA=J090081L24;Oryzabase=17077;TENOR=Os06t0161300-01;KEGG=Os06t0161300-01
Chr06	irgsp1_rep	five_prime_UTR	3102940	3104756	.	+	.	Parent=Os06t0161300-01
Chr06	irgsp1_rep	CDS	3104757	3104966	.	+	0	Parent=Os06t0161300-01
Chr06	irgsp1_rep	CDS	3105059	3105916	.	+	0	Parent=Os06t0161300-01
Chr06	irgsp1_rep	CDS	3106005	3106151	.	+	0	Parent=Os06t0161300-01
Chr06	irgsp1_rep	CDS	3107032	3107385	.	+	0	Parent=Os06t0161300-01
Chr06	irgsp1_rep	three_prime_UTR	3107386	3107487	.	+	.	Parent=Os06t0161300-01
Chr06	irgsp1_rep	mRNA	3104856	3107226	.	-	.	ID=Os06t0161350-00;Name=Os06t0161350-00;Locus_id=Os06g0161350;Note=Hypothetical protein.;Transcript_evidence=tplb0029a18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0161350-00
Chr06	irgsp1_rep	five_prime_UTR	3107093	3107226	.	-	.	Parent=Os06t0161350-00
Chr06	irgsp1_rep	five_prime_UTR	3105814	3106189	.	-	.	Parent=Os06t0161350-00
Chr06	irgsp1_rep	CDS	3105421	3105813	.	-	0	Parent=Os06t0161350-00
Chr06	irgsp1_rep	three_prime_UTR	3105074	3105420	.	-	.	Parent=Os06t0161350-00
Chr06	irgsp1_rep	three_prime_UTR	3104856	3104981	.	-	.	Parent=Os06t0161350-00
Chr06	irgsp1_rep	mRNA	3111535	3115146	.	+	.	ID=Os06t0161400-01;Name=Os06t0161400-01;Locus_id=Os06g0161400;Note=Protein of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK240732 (DDBJ%2C Best hit);ORF_evidence=NP_001056885.2 (RefSeq);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=J043031H21;TENOR=Os06t0161400-01;KEGG=Os06t0161400-01
Chr06	irgsp1_rep	five_prime_UTR	3111535	3111647	.	+	.	Parent=Os06t0161400-01
Chr06	irgsp1_rep	CDS	3111648	3112953	.	+	0	Parent=Os06t0161400-01
Chr06	irgsp1_rep	CDS	3113494	3114065	.	+	2	Parent=Os06t0161400-01
Chr06	irgsp1_rep	three_prime_UTR	3114066	3114133	.	+	.	Parent=Os06t0161400-01
Chr06	irgsp1_rep	three_prime_UTR	3114887	3115146	.	+	.	Parent=Os06t0161400-01
Chr06	irgsp1_rep	mRNA	3128079	3130959	.	+	.	ID=Os06t0161800-01;Name=Os06t0161800-01;Locus_id=Os06g0161800;Note=Protein of unknown function DUF569 family protein.;Transcript_evidence=AK064664 (DDBJ%2C Best hit);ORF_evidence=B9FRM9 (UniProt);NIAS_FLcDNA=002-115-A12;Expression=AK064664;TENOR=Os06t0161800-01;KEGG=Os06t0161800-01
Chr06	irgsp1_rep	five_prime_UTR	3128079	3128204	.	+	.	Parent=Os06t0161800-01
Chr06	irgsp1_rep	CDS	3128205	3128708	.	+	0	Parent=Os06t0161800-01
Chr06	irgsp1_rep	CDS	3129307	3129586	.	+	0	Parent=Os06t0161800-01
Chr06	irgsp1_rep	CDS	3130599	3130639	.	+	2	Parent=Os06t0161800-01
Chr06	irgsp1_rep	three_prime_UTR	3130640	3130959	.	+	.	Parent=Os06t0161800-01
Chr06	irgsp1_rep	mRNA	3131221	3134226	.	+	.	ID=Os06t0161900-01;Name=Os06t0161900-01;Locus_id=Os06g0161900;Note=Protein of unknown function DUF569 family protein.;Transcript_evidence=AK106234 (DDBJ%2C Best hit);ORF_evidence=B8B367 (UniProt);InterPro=Protein of unknown function DUF569 (IPR007679),Actin cross-linking (IPR008999);NIAS_FLcDNA=002-100-B09;Expression=AK106234;TENOR=Os06t0161900-01;KEGG=Os06t0161900-01
Chr06	irgsp1_rep	five_prime_UTR	3131221	3131913	.	+	.	Parent=Os06t0161900-01
Chr06	irgsp1_rep	CDS	3131914	3132432	.	+	0	Parent=Os06t0161900-01
Chr06	irgsp1_rep	CDS	3132855	3133116	.	+	0	Parent=Os06t0161900-01
Chr06	irgsp1_rep	CDS	3133867	3133907	.	+	2	Parent=Os06t0161900-01
Chr06	irgsp1_rep	three_prime_UTR	3133908	3134226	.	+	.	Parent=Os06t0161900-01
Chr06	irgsp1_rep	mRNA	3135615	3136974	.	+	.	ID=Os06t0162100-00;Name=Os06t0162100-00;Locus_id=Os06g0162100;Note=Protein of unknown function DUF569 domain containing protein.;Transcript_evidence=EU966851 (DDBJ);ORF_evidence=Q5WA96 (UniProt);InterPro=Protein of unknown function DUF569 (IPR007679),Actin cross-linking (IPR008999);TENOR=Os06t0162100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	3135615	3135722	.	+	.	Parent=Os06t0162100-00
Chr06	irgsp1_rep	CDS	3135723	3136270	.	+	0	Parent=Os06t0162100-00
Chr06	irgsp1_rep	CDS	3136653	3136974	.	+	1	Parent=Os06t0162100-00
Chr06	irgsp1_rep	mRNA	3145477	3147598	.	+	.	ID=Os06t0162500-01;Name=Os06t0162500-01;Locus_id=Os06g0162500;CGSNL Gene Symbol=2ODD10;CGSNL Gene Name=2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 10;Oryzabase Gene Symbol Synonym(s)=2-ODD10%2C Os2-ODD10%2C Os2ODD10;Oryzabase Gene Name Synonym(s)=2-oxoglutarate-dependent dioxygenase 10;Note=Similar to Naringenin 3-dioxygenase like protein.;Transcript_evidence=AK100178 (DDBJ%2C Best hit);ORF_evidence=B6TQ13 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=J023029O18;Oryzabase=22617;Expression=AK100178;TENOR=Os06t0162500-01;KEGG=Os06t0162500-01
Chr06	irgsp1_rep	five_prime_UTR	3145477	3145533	.	+	.	Parent=Os06t0162500-01
Chr06	irgsp1_rep	CDS	3145534	3146021	.	+	0	Parent=Os06t0162500-01
Chr06	irgsp1_rep	CDS	3146501	3146822	.	+	1	Parent=Os06t0162500-01
Chr06	irgsp1_rep	CDS	3147205	3147453	.	+	0	Parent=Os06t0162500-01
Chr06	irgsp1_rep	three_prime_UTR	3147454	3147598	.	+	.	Parent=Os06t0162500-01
Chr06	irgsp1_rep	mRNA	3148015	3153030	.	-	.	ID=Os06t0162550-00;Name=Os06t0162550-00;Locus_id=Os06g0162550;Note=Carotenoid oxygenase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FRN1 (UniProt);InterPro=Carotenoid oxygenase (IPR004294);TENOR=Os06t0162550-00
Chr06	irgsp1_rep	CDS	3152926	3153030	.	-	0	Parent=Os06t0162550-00
Chr06	irgsp1_rep	CDS	3152477	3152617	.	-	0	Parent=Os06t0162550-00
Chr06	irgsp1_rep	CDS	3152200	3152302	.	-	0	Parent=Os06t0162550-00
Chr06	irgsp1_rep	CDS	3151819	3152078	.	-	2	Parent=Os06t0162550-00
Chr06	irgsp1_rep	CDS	3151143	3151322	.	-	0	Parent=Os06t0162550-00
Chr06	irgsp1_rep	CDS	3150719	3150797	.	-	0	Parent=Os06t0162550-00
Chr06	irgsp1_rep	CDS	3150149	3150230	.	-	2	Parent=Os06t0162550-00
Chr06	irgsp1_rep	CDS	3149762	3149900	.	-	1	Parent=Os06t0162550-00
Chr06	irgsp1_rep	CDS	3148678	3148996	.	-	0	Parent=Os06t0162550-00
Chr06	irgsp1_rep	CDS	3148453	3148505	.	-	2	Parent=Os06t0162550-00
Chr06	irgsp1_rep	CDS	3148223	3148375	.	-	0	Parent=Os06t0162550-00
Chr06	irgsp1_rep	CDS	3148015	3148119	.	-	0	Parent=Os06t0162550-00
Chr06	irgsp1_rep	mRNA	3154274	3158428	.	-	.	ID=Os06t0162600-01;Name=Os06t0162600-01;Locus_id=Os06g0162600;Note=Similar to Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11 Mtase).;Transcript_evidence=AK066755 (DDBJ%2C Best hit);ORF_evidence=NP_194612.2 (RefSeq);GO=Biological Process: methylation (GO:0032259),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: methyltransferase activity (GO:0008168);InterPro=DNA methylase%2C N-6 adenine-specific%2C conserved site (IPR002052),Methyltransferase small (IPR007848);NIAS_FLcDNA=J013075C21;Expression=AK066755;TENOR=Os06t0162600-01;KEGG=Os06t0162600-01
Chr06	irgsp1_rep	five_prime_UTR	3158356	3158428	.	-	.	Parent=Os06t0162600-01
Chr06	irgsp1_rep	CDS	3158296	3158355	.	-	0	Parent=Os06t0162600-01
Chr06	irgsp1_rep	CDS	3158102	3158158	.	-	0	Parent=Os06t0162600-01
Chr06	irgsp1_rep	CDS	3157416	3157513	.	-	0	Parent=Os06t0162600-01
Chr06	irgsp1_rep	CDS	3156818	3156887	.	-	1	Parent=Os06t0162600-01
Chr06	irgsp1_rep	CDS	3156031	3156079	.	-	0	Parent=Os06t0162600-01
Chr06	irgsp1_rep	CDS	3155527	3155615	.	-	2	Parent=Os06t0162600-01
Chr06	irgsp1_rep	CDS	3155389	3155436	.	-	0	Parent=Os06t0162600-01
Chr06	irgsp1_rep	CDS	3155116	3155175	.	-	0	Parent=Os06t0162600-01
Chr06	irgsp1_rep	CDS	3154491	3154643	.	-	0	Parent=Os06t0162600-01
Chr06	irgsp1_rep	three_prime_UTR	3154274	3154490	.	-	.	Parent=Os06t0162600-01
Chr06	irgsp1_rep	mRNA	3158656	3162646	.	+	.	ID=Os06t0162700-01;Name=Os06t0162700-01;Locus_id=Os06g0162700;Note=SANT domain%2C DNA binding domain containing protein.;Transcript_evidence=AK241812 (DDBJ%2C Best hit);ORF_evidence=Q5WA77 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J065210K15;TENOR=Os06t0162700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	3158656	3158772	.	+	.	Parent=Os06t0162700-01
Chr06	irgsp1_rep	five_prime_UTR	3158842	3158901	.	+	.	Parent=Os06t0162700-01
Chr06	irgsp1_rep	CDS	3158902	3158925	.	+	0	Parent=Os06t0162700-01
Chr06	irgsp1_rep	CDS	3160169	3160551	.	+	0	Parent=Os06t0162700-01
Chr06	irgsp1_rep	CDS	3160707	3160833	.	+	1	Parent=Os06t0162700-01
Chr06	irgsp1_rep	CDS	3161648	3162400	.	+	0	Parent=Os06t0162700-01
Chr06	irgsp1_rep	three_prime_UTR	3162401	3162646	.	+	.	Parent=Os06t0162700-01
Chr06	irgsp1_rep	mRNA	3162860	3169331	.	-	.	ID=Os06t0162800-01;Name=Os06t0162800-01;Locus_id=Os06g0162800;RAP-DB Gene Symbol Synonym(s)=OsMADS5;RAP-DB Gene Name Synonym(s)=MADS-box transcription factor 5;CGSNL Gene Symbol=MADS5;CGSNL Gene Name=MADS BOX GENE 5;Oryzabase Gene Symbol Synonym(s)=OsMADS5%2C FDRMADS2;Oryzabase Gene Name Synonym(s)=MADS box gene5%2C MADS-box transcription factor 5;Note=MADS-box transcription factor%2C Control of spikelet morphogenesis%2C Regulation of floral meristem determinacy;Transcript_evidence=AK064184,U78890 (M201);ORF_evidence=Q0DEB8;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Biological Process: positive regulation of transcription from RNA polymerase II promoter (GO:0045944),Molecular Function: RNA polymerase II regulatory region sequence-specific DNA binding (GO:0000977),Molecular Function: DNA binding (GO:0003677),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700),Molecular Function: protein dimerization activity (GO:0046983),Cellular Component: nucleus (GO:0005634);InterPro=Transcription factor%2C MADS-box superfamily (IPR036879),Transcription factor%2C MADS-box (IPR002100),MADS MEF2-like (IPR033896),Transcription factor%2C K-box (IPR002487);NIAS_FLcDNA=002-104-B10;Manual Curation=February 13%2C 2018;Literature_PMID=29217592;Oryzabase=3077;Expression=AK064184;TENOR=Os06t0162800-01;KEGG=Os06t0162800-01
Chr06	irgsp1_rep	five_prime_UTR	3169196	3169331	.	-	.	Parent=Os06t0162800-01
Chr06	irgsp1_rep	CDS	3169011	3169195	.	-	0	Parent=Os06t0162800-01
Chr06	irgsp1_rep	CDS	3166093	3166177	.	-	1	Parent=Os06t0162800-01
Chr06	irgsp1_rep	CDS	3165140	3165201	.	-	0	Parent=Os06t0162800-01
Chr06	irgsp1_rep	CDS	3164968	3165067	.	-	1	Parent=Os06t0162800-01
Chr06	irgsp1_rep	CDS	3164705	3164746	.	-	0	Parent=Os06t0162800-01
Chr06	irgsp1_rep	CDS	3164564	3164605	.	-	0	Parent=Os06t0162800-01
Chr06	irgsp1_rep	CDS	3163644	3163771	.	-	0	Parent=Os06t0162800-01
Chr06	irgsp1_rep	CDS	3163067	3163100	.	-	1	Parent=Os06t0162800-01
Chr06	irgsp1_rep	three_prime_UTR	3162860	3163066	.	-	.	Parent=Os06t0162800-01
Chr06	irgsp1_rep	mRNA	3176857	3181638	.	-	.	ID=Os06t0163000-01;Name=Os06t0163000-01;Locus_id=Os06g0163000;CGSNL Gene Symbol=RLCK197;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 197;Oryzabase Gene Symbol Synonym(s)=OsPUB70%2C PUB70%2C OsRLCK197;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 70%2C U-box protein 70%2C Receptor-like Cytoplasmic Kinase 197;Note=Similar to Heat shock protein STI (Stress inducible protein) (GmSTI).;Transcript_evidence=AK069245 (DDBJ%2C Best hit);ORF_evidence=Q336U6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Tetratricopeptide TPR-1 (IPR001440),U box domain (IPR003613),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J023014O10;Oryzabase=17861;Expression=AK069245;TENOR=Os06t0163000-01;KEGG=Os06t0163000-01
Chr06	irgsp1_rep	five_prime_UTR	3181518	3181638	.	-	.	Parent=Os06t0163000-01
Chr06	irgsp1_rep	CDS	3181326	3181517	.	-	0	Parent=Os06t0163000-01
Chr06	irgsp1_rep	CDS	3180944	3181232	.	-	0	Parent=Os06t0163000-01
Chr06	irgsp1_rep	CDS	3180157	3180242	.	-	2	Parent=Os06t0163000-01
Chr06	irgsp1_rep	CDS	3179792	3180015	.	-	0	Parent=Os06t0163000-01
Chr06	irgsp1_rep	CDS	3179645	3179711	.	-	1	Parent=Os06t0163000-01
Chr06	irgsp1_rep	CDS	3179310	3179429	.	-	0	Parent=Os06t0163000-01
Chr06	irgsp1_rep	CDS	3178428	3178913	.	-	0	Parent=Os06t0163000-01
Chr06	irgsp1_rep	CDS	3177539	3178297	.	-	0	Parent=Os06t0163000-01
Chr06	irgsp1_rep	CDS	3177143	3177337	.	-	0	Parent=Os06t0163000-01
Chr06	irgsp1_rep	three_prime_UTR	3176857	3177142	.	-	.	Parent=Os06t0163000-01
Chr06	irgsp1_rep	mRNA	3178123	3181613	.	-	.	ID=Os06t0163000-02;Name=Os06t0163000-02;Locus_id=Os06g0163000;CGSNL Gene Symbol=RLCK197;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 197;Oryzabase Gene Symbol Synonym(s)=OsPUB70%2C PUB70%2C OsRLCK197;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 70%2C U-box protein 70%2C Receptor-like Cytoplasmic Kinase 197;Note=Hypothetical conserved gene.;Transcript_evidence=AK072504 (DDBJ%2C Best hit);ORF_evidence=B8B376 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Tetratricopeptide TPR-1 (IPR001440),Protein kinase-like domain (IPR011009),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Protein kinase%2C ATP binding site (IPR017441),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J023125E09;Oryzabase=17861;TENOR=Os06t0163000-02
Chr06	irgsp1_rep	five_prime_UTR	3181518	3181613	.	-	.	Parent=Os06t0163000-02
Chr06	irgsp1_rep	CDS	3181326	3181517	.	-	0	Parent=Os06t0163000-02
Chr06	irgsp1_rep	CDS	3180944	3181232	.	-	0	Parent=Os06t0163000-02
Chr06	irgsp1_rep	CDS	3180157	3180242	.	-	2	Parent=Os06t0163000-02
Chr06	irgsp1_rep	CDS	3179792	3180015	.	-	0	Parent=Os06t0163000-02
Chr06	irgsp1_rep	CDS	3179645	3179711	.	-	1	Parent=Os06t0163000-02
Chr06	irgsp1_rep	CDS	3179310	3179429	.	-	0	Parent=Os06t0163000-02
Chr06	irgsp1_rep	CDS	3178428	3178913	.	-	0	Parent=Os06t0163000-02
Chr06	irgsp1_rep	CDS	3178123	3178297	.	-	0	Parent=Os06t0163000-02
Chr06	irgsp1_rep	mRNA	3175806	3181612	.	-	.	ID=Os06t0163000-03;Name=Os06t0163000-03;Locus_id=Os06g0163000;CGSNL Gene Symbol=RLCK197;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 197;Oryzabase Gene Symbol Synonym(s)=OsPUB70%2C PUB70%2C OsRLCK197;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 70%2C U-box protein 70%2C Receptor-like Cytoplasmic Kinase 197;Note=Similar to Heat shock protein STI (Stress inducible protein) (GmSTI).;Transcript_evidence=AK069675 (DDBJ%2C Best hit);ORF_evidence=Q336U6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Tetratricopeptide TPR-1 (IPR001440),U box domain (IPR003613),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J023027M09;Oryzabase=17861;Expression=AK069675;TENOR=Os06t0163000-03;KEGG=Os06t0163000-03
Chr06	irgsp1_rep	five_prime_UTR	3181518	3181612	.	-	.	Parent=Os06t0163000-03
Chr06	irgsp1_rep	CDS	3181326	3181517	.	-	0	Parent=Os06t0163000-03
Chr06	irgsp1_rep	CDS	3180944	3181232	.	-	0	Parent=Os06t0163000-03
Chr06	irgsp1_rep	CDS	3180157	3180242	.	-	2	Parent=Os06t0163000-03
Chr06	irgsp1_rep	CDS	3179792	3180015	.	-	0	Parent=Os06t0163000-03
Chr06	irgsp1_rep	CDS	3179645	3179711	.	-	1	Parent=Os06t0163000-03
Chr06	irgsp1_rep	CDS	3179310	3179429	.	-	0	Parent=Os06t0163000-03
Chr06	irgsp1_rep	CDS	3178428	3178913	.	-	0	Parent=Os06t0163000-03
Chr06	irgsp1_rep	CDS	3177539	3178297	.	-	0	Parent=Os06t0163000-03
Chr06	irgsp1_rep	CDS	3177143	3177337	.	-	0	Parent=Os06t0163000-03
Chr06	irgsp1_rep	three_prime_UTR	3177022	3177142	.	-	.	Parent=Os06t0163000-03
Chr06	irgsp1_rep	three_prime_UTR	3175806	3176379	.	-	.	Parent=Os06t0163000-03
Chr06	irgsp1_rep	mRNA	3177119	3181116	.	+	.	ID=Os06t0163100-00;Name=Os06t0163100-00;Locus_id=Os06g0163100;Note=Hypothetical protein.;Transcript_evidence=tplb0060b15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0163100-00
Chr06	irgsp1_rep	five_prime_UTR	3177119	3177345	.	+	.	Parent=Os06t0163100-00
Chr06	irgsp1_rep	five_prime_UTR	3177550	3177711	.	+	.	Parent=Os06t0163100-00
Chr06	irgsp1_rep	CDS	3177712	3178014	.	+	0	Parent=Os06t0163100-00
Chr06	irgsp1_rep	three_prime_UTR	3178015	3178295	.	+	.	Parent=Os06t0163100-00
Chr06	irgsp1_rep	three_prime_UTR	3178426	3178794	.	+	.	Parent=Os06t0163100-00
Chr06	irgsp1_rep	three_prime_UTR	3179124	3179513	.	+	.	Parent=Os06t0163100-00
Chr06	irgsp1_rep	three_prime_UTR	3179801	3180003	.	+	.	Parent=Os06t0163100-00
Chr06	irgsp1_rep	three_prime_UTR	3180144	3180237	.	+	.	Parent=Os06t0163100-00
Chr06	irgsp1_rep	three_prime_UTR	3180932	3181116	.	+	.	Parent=Os06t0163100-00
Chr06	irgsp1_rep	mRNA	3186510	3191315	.	+	.	ID=Os06t0163200-01;Name=Os06t0163200-01;Locus_id=Os06g0163200;Oryzabase Gene Symbol Synonym(s)=OsPOP11%2C POP11;Oryzabase Gene Name Synonym(s)=Prolyl Oligopeptidase 11%2C PROLYL OLIGOPEPTIDASE 11;Note=Esterase/lipase/thioesterase domain containing protein.;Transcript_evidence=AK068888 (DDBJ%2C Best hit);ORF_evidence=Q5WA74 (UniProt);NIAS_FLcDNA=J023001E15;Oryzabase=20019;Expression=AK068888;TENOR=Os06t0163200-01;KEGG=Os06t0163200-01
Chr06	irgsp1_rep	five_prime_UTR	3186510	3186511	.	+	.	Parent=Os06t0163200-01
Chr06	irgsp1_rep	CDS	3186512	3186653	.	+	0	Parent=Os06t0163200-01
Chr06	irgsp1_rep	CDS	3186769	3186845	.	+	2	Parent=Os06t0163200-01
Chr06	irgsp1_rep	CDS	3186956	3187036	.	+	0	Parent=Os06t0163200-01
Chr06	irgsp1_rep	CDS	3187516	3187644	.	+	0	Parent=Os06t0163200-01
Chr06	irgsp1_rep	CDS	3187773	3187859	.	+	0	Parent=Os06t0163200-01
Chr06	irgsp1_rep	CDS	3187970	3188023	.	+	0	Parent=Os06t0163200-01
Chr06	irgsp1_rep	CDS	3188440	3188530	.	+	0	Parent=Os06t0163200-01
Chr06	irgsp1_rep	CDS	3188623	3188693	.	+	2	Parent=Os06t0163200-01
Chr06	irgsp1_rep	CDS	3188778	3188847	.	+	0	Parent=Os06t0163200-01
Chr06	irgsp1_rep	CDS	3188996	3189048	.	+	2	Parent=Os06t0163200-01
Chr06	irgsp1_rep	CDS	3189140	3189233	.	+	0	Parent=Os06t0163200-01
Chr06	irgsp1_rep	CDS	3189577	3189674	.	+	2	Parent=Os06t0163200-01
Chr06	irgsp1_rep	CDS	3191134	3191217	.	+	0	Parent=Os06t0163200-01
Chr06	irgsp1_rep	three_prime_UTR	3191218	3191315	.	+	.	Parent=Os06t0163200-01
Chr06	irgsp1_rep	mRNA	3195612	3198736	.	+	.	ID=Os06t0163300-01;Name=Os06t0163300-01;Locus_id=Os06g0163300;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK060328 (DDBJ%2C Best hit),AK058295 (DDBJ%2C Best hit),AK073824 (DDBJ%2C Best hit),AK106071 (DDBJ%2C Best hit);ORF_evidence=B6TDG9 (UniProt);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=001-008-A10,001-013-F03,J033070N04,001-206-H07;Expression=AK060328;TENOR=Os06t0163300-01;KEGG=Os06t0163300-01
Chr06	irgsp1_rep	five_prime_UTR	3195612	3195696	.	+	.	Parent=Os06t0163300-01
Chr06	irgsp1_rep	five_prime_UTR	3195887	3195926	.	+	.	Parent=Os06t0163300-01
Chr06	irgsp1_rep	CDS	3195927	3196424	.	+	0	Parent=Os06t0163300-01
Chr06	irgsp1_rep	CDS	3197290	3197475	.	+	0	Parent=Os06t0163300-01
Chr06	irgsp1_rep	CDS	3198280	3198564	.	+	0	Parent=Os06t0163300-01
Chr06	irgsp1_rep	three_prime_UTR	3198565	3198736	.	+	.	Parent=Os06t0163300-01
Chr06	irgsp1_rep	mRNA	3196766	3197360	.	-	.	ID=Os06t0163350-00;Name=Os06t0163350-00;Locus_id=Os06g0163350;Note=Non-protein coding transcript.;Transcript_evidence=CT828523 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os06t0163350-00
Chr06	irgsp1_rep	exon	3196766	3197360	.	-	.	Parent=Os06t0163350-00
Chr06	irgsp1_rep	mRNA	3199376	3203918	.	+	.	ID=Os06t0163400-01;Name=Os06t0163400-01;Locus_id=Os06g0163400;Oryzabase Gene Symbol Synonym(s)=PDIL1%3B5%2C PDIL1-5%2C PDIL 1-5%2C OsPDIL1-5;Oryzabase Gene Name Synonym(s)=PROTEIN DISULFIDE ISOMERASE-LIKE 1%3B5%2C PROTEIN DISULFIDE ISOMERASE-LIKE 1-5%2C PDI-like protein 1-5;Note=Thioredoxin domain 2 containing protein.;Transcript_evidence=AK073970 (DDBJ%2C Best hit);ORF_evidence=Q5WA72 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454);InterPro=Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766);NIAS_FLcDNA=J033071P17;Oryzabase=11899;Expression=AK073970;TENOR=Os06t0163400-01;KEGG=Os06t0163400-01
Chr06	irgsp1_rep	five_prime_UTR	3199376	3199482	.	+	.	Parent=Os06t0163400-01
Chr06	irgsp1_rep	CDS	3199483	3199970	.	+	0	Parent=Os06t0163400-01
Chr06	irgsp1_rep	CDS	3200070	3200199	.	+	1	Parent=Os06t0163400-01
Chr06	irgsp1_rep	CDS	3200340	3200505	.	+	0	Parent=Os06t0163400-01
Chr06	irgsp1_rep	CDS	3200773	3200891	.	+	2	Parent=Os06t0163400-01
Chr06	irgsp1_rep	CDS	3201064	3201144	.	+	0	Parent=Os06t0163400-01
Chr06	irgsp1_rep	CDS	3201244	3201330	.	+	0	Parent=Os06t0163400-01
Chr06	irgsp1_rep	CDS	3201652	3201723	.	+	0	Parent=Os06t0163400-01
Chr06	irgsp1_rep	CDS	3201799	3201867	.	+	0	Parent=Os06t0163400-01
Chr06	irgsp1_rep	CDS	3202357	3202434	.	+	0	Parent=Os06t0163400-01
Chr06	irgsp1_rep	CDS	3202548	3202688	.	+	0	Parent=Os06t0163400-01
Chr06	irgsp1_rep	CDS	3203341	3203394	.	+	0	Parent=Os06t0163400-01
Chr06	irgsp1_rep	CDS	3203473	3203589	.	+	0	Parent=Os06t0163400-01
Chr06	irgsp1_rep	three_prime_UTR	3203590	3203918	.	+	.	Parent=Os06t0163400-01
Chr06	irgsp1_rep	mRNA	3204057	3204326	.	-	.	ID=Os06t0163450-00;Name=Os06t0163450-00;Locus_id=Os06g0163450;Note=Similar to predicted protein.;Transcript_evidence=EU948644 (DDBJ);ORF_evidence=XP_001779700.1 (RefSeq);TENOR=Os06t0163450-00;KEGG=Os06t0163450-00
Chr06	irgsp1_rep	CDS	3204057	3204326	.	-	0	Parent=Os06t0163450-00
Chr06	irgsp1_rep	mRNA	3213518	3218783	.	+	.	ID=Os06t0163500-01;Name=Os06t0163500-01;Locus_id=Os06g0163500;Oryzabase Gene Symbol Synonym(s)=OsSub49%2C SUB49;Oryzabase Gene Name Synonym(s)=Subtilisin 49%2C SUBTILISIN 49;Note=Peptidase S8 and S53%2C subtilisin%2C kexin%2C sedolisin domain containing protein.;Transcript_evidence=AK071415 (DDBJ%2C Best hit);ORF_evidence=XP_002873959.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);NIAS_FLcDNA=J023090G07;Oryzabase=20133;Expression=AK071415;TENOR=Os06t0163500-01;KEGG=Os06t0163500-01
Chr06	irgsp1_rep	five_prime_UTR	3213518	3213519	.	+	.	Parent=Os06t0163500-01
Chr06	irgsp1_rep	CDS	3213520	3213545	.	+	0	Parent=Os06t0163500-01
Chr06	irgsp1_rep	CDS	3214229	3214492	.	+	1	Parent=Os06t0163500-01
Chr06	irgsp1_rep	CDS	3214694	3215777	.	+	1	Parent=Os06t0163500-01
Chr06	irgsp1_rep	CDS	3216583	3217089	.	+	0	Parent=Os06t0163500-01
Chr06	irgsp1_rep	CDS	3217794	3217854	.	+	0	Parent=Os06t0163500-01
Chr06	irgsp1_rep	CDS	3218097	3218197	.	+	2	Parent=Os06t0163500-01
Chr06	irgsp1_rep	three_prime_UTR	3218198	3218783	.	+	.	Parent=Os06t0163500-01
Chr06	irgsp1_rep	mRNA	3219086	3219858	.	-	.	ID=Os06t0163600-01;Name=Os06t0163600-01;Locus_id=Os06g0163600;Note=Similar to predicted protein.;Transcript_evidence=AK240848 (DDBJ%2C Best hit);ORF_evidence=XP_002876619.1 (RefSeq);NIAS_FLcDNA=J065019N15;TENOR=Os06t0163600-01;KEGG=Os06t0163600-01
Chr06	irgsp1_rep	five_prime_UTR	3219857	3219858	.	-	.	Parent=Os06t0163600-01
Chr06	irgsp1_rep	CDS	3219752	3219856	.	-	0	Parent=Os06t0163600-01
Chr06	irgsp1_rep	CDS	3219343	3219537	.	-	0	Parent=Os06t0163600-01
Chr06	irgsp1_rep	three_prime_UTR	3219086	3219342	.	-	.	Parent=Os06t0163600-01
Chr06	irgsp1_rep	mRNA	3234522	3235262	.	-	.	ID=Os06t0163701-01;Name=Os06t0163701-01;Locus_id=Os06g0163701;Note=Non-protein coding transcript.;Transcript_evidence=AK242073 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J075134K10;TENOR=Os06t0163701-01
Chr06	irgsp1_rep	exon	3235204	3235262	.	-	.	Parent=Os06t0163701-01
Chr06	irgsp1_rep	exon	3234522	3234863	.	-	.	Parent=Os06t0163701-01
Chr06	irgsp1_rep	mRNA	3241818	3246312	.	-	.	ID=Os06t0163900-01;Name=Os06t0163900-01;Locus_id=Os06g0163900;Note=Conserved hypothetical protein.;Transcript_evidence=AK102733 (DDBJ%2C Best hit);ORF_evidence=B9FRN9 (UniProt);NIAS_FLcDNA=J033106B03;TENOR=Os06t0163900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	3246264	3246312	.	-	.	Parent=Os06t0163900-01
Chr06	irgsp1_rep	CDS	3245703	3246263	.	-	0	Parent=Os06t0163900-01
Chr06	irgsp1_rep	three_prime_UTR	3245434	3245702	.	-	.	Parent=Os06t0163900-01
Chr06	irgsp1_rep	three_prime_UTR	3242179	3244184	.	-	.	Parent=Os06t0163900-01
Chr06	irgsp1_rep	three_prime_UTR	3241818	3242045	.	-	.	Parent=Os06t0163900-01
Chr06	irgsp1_rep	mRNA	3250548	3261364	.	-	.	ID=Os06t0164000-01;Name=Os06t0164000-01;Locus_id=Os06g0164000;Note=Zinc finger%2C MIZ-type domain containing protein.;Transcript_evidence=AK069464 (DDBJ%2C Best hit);ORF_evidence=B8B381 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C MIZ-type (IPR004181),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J023022A11;Expression=AK069464;TENOR=Os06t0164000-01;KEGG=Os06t0164000-01
Chr06	irgsp1_rep	five_prime_UTR	3261233	3261364	.	-	.	Parent=Os06t0164000-01
Chr06	irgsp1_rep	CDS	3261018	3261232	.	-	0	Parent=Os06t0164000-01
Chr06	irgsp1_rep	CDS	3260805	3260877	.	-	1	Parent=Os06t0164000-01
Chr06	irgsp1_rep	CDS	3259550	3259615	.	-	0	Parent=Os06t0164000-01
Chr06	irgsp1_rep	CDS	3257923	3257988	.	-	0	Parent=Os06t0164000-01
Chr06	irgsp1_rep	CDS	3257693	3257775	.	-	0	Parent=Os06t0164000-01
Chr06	irgsp1_rep	CDS	3256698	3256749	.	-	1	Parent=Os06t0164000-01
Chr06	irgsp1_rep	CDS	3255425	3255490	.	-	0	Parent=Os06t0164000-01
Chr06	irgsp1_rep	CDS	3254757	3254824	.	-	0	Parent=Os06t0164000-01
Chr06	irgsp1_rep	CDS	3254628	3254676	.	-	1	Parent=Os06t0164000-01
Chr06	irgsp1_rep	CDS	3254452	3254536	.	-	0	Parent=Os06t0164000-01
Chr06	irgsp1_rep	CDS	3254273	3254371	.	-	2	Parent=Os06t0164000-01
Chr06	irgsp1_rep	CDS	3254125	3254176	.	-	2	Parent=Os06t0164000-01
Chr06	irgsp1_rep	CDS	3253653	3253704	.	-	1	Parent=Os06t0164000-01
Chr06	irgsp1_rep	CDS	3253453	3253569	.	-	0	Parent=Os06t0164000-01
Chr06	irgsp1_rep	CDS	3252517	3253374	.	-	0	Parent=Os06t0164000-01
Chr06	irgsp1_rep	CDS	3250842	3251459	.	-	0	Parent=Os06t0164000-01
Chr06	irgsp1_rep	three_prime_UTR	3250548	3250841	.	-	.	Parent=Os06t0164000-01
Chr06	irgsp1_rep	mRNA	3264019	3267304	.	-	.	ID=Os06t0164100-02;Name=Os06t0164100-02;Locus_id=Os06g0164100;Oryzabase Gene Symbol Synonym(s)=OsPP83;Oryzabase Gene Name Synonym(s)=Protein phosphatase 83;Note=Similar to Serine/threonine protein phosphatase PP1 (EC 3.1.3.16).;Transcript_evidence=AK064345 (DDBJ%2C Best hit),AK102278 (DDBJ%2C Best hit);ORF_evidence=B8B382 (UniProt);NIAS_FLcDNA=002-107-H10,J033089E02;Oryzabase=18647;Expression=AK064345;TENOR=Os06t0164100-02;KEGG=Os06t0164100-02 (EC:3.1.3.16)
Chr06	irgsp1_rep	five_prime_UTR	3267152	3267304	.	-	.	Parent=Os06t0164100-02
Chr06	irgsp1_rep	CDS	3266974	3267151	.	-	0	Parent=Os06t0164100-02
Chr06	irgsp1_rep	CDS	3265573	3266132	.	-	2	Parent=Os06t0164100-02
Chr06	irgsp1_rep	CDS	3264527	3264757	.	-	0	Parent=Os06t0164100-02
Chr06	irgsp1_rep	three_prime_UTR	3264019	3264526	.	-	.	Parent=Os06t0164100-02
Chr06	irgsp1_rep	mRNA	3270496	3271434	.	+	.	ID=Os06t0164300-00;Name=Os06t0164300-00;Locus_id=Os06g0164300;Note=Similar to H0502G05.11 protein.;Transcript_evidence=CT836200 (DDBJ%2C Best hit);ORF_evidence=Q01JF5 (UniProt);TENOR=Os06t0164300-00;KEGG=Os06t0164300-00
Chr06	irgsp1_rep	five_prime_UTR	3270496	3271122	.	+	.	Parent=Os06t0164300-00
Chr06	irgsp1_rep	CDS	3271123	3271434	.	+	0	Parent=Os06t0164300-00
Chr06	irgsp1_rep	mRNA	3273390	3276888	.	+	.	ID=Os06t0164400-01;Name=Os06t0164400-01;Locus_id=Os06g0164400;Oryzabase Gene Symbol Synonym(s)=OsbHLH108%2C OsbHLH108/SPT%2C bHLH108%2C SPT;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 108%2C OsSPATULA%2C SPATULA;Note=Similar to predicted protein.;Transcript_evidence=AK243447 (DDBJ%2C Best hit);ORF_evidence=Q5VRS4 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J100069B16;Oryzabase=15389;TENOR=Os06t0164400-01;KEGG=Os06t0164400-01
Chr06	irgsp1_rep	five_prime_UTR	3273390	3273486	.	+	.	Parent=Os06t0164400-01
Chr06	irgsp1_rep	CDS	3273487	3273825	.	+	0	Parent=Os06t0164400-01
Chr06	irgsp1_rep	CDS	3273935	3274189	.	+	0	Parent=Os06t0164400-01
Chr06	irgsp1_rep	three_prime_UTR	3274190	3276888	.	+	.	Parent=Os06t0164400-01
Chr06	irgsp1_rep	mRNA	3277665	3279171	.	+	.	ID=Os06t0164500-00;Name=Os06t0164500-00;Locus_id=Os06g0164500;Note=Conserved hypothetical protein.;Transcript_evidence=AK355771 (DDBJ);ORF_evidence=NP_001056903.1 (RefSeq);TENOR=Os06t0164500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	3277665	3278975	.	+	0	Parent=Os06t0164500-00
Chr06	irgsp1_rep	three_prime_UTR	3278976	3279171	.	+	.	Parent=Os06t0164500-00
Chr06	irgsp1_rep	mRNA	3280436	3284730	.	+	.	ID=Os06t0164600-01;Name=Os06t0164600-01;Locus_id=Os06g0164600;Note=Hypothetical gene.;Transcript_evidence=AK102554 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033097F08;Expression=AK102554;TENOR=Os06t0164600-01;KEGG=Os06t0164600-01
Chr06	irgsp1_rep	five_prime_UTR	3280436	3280436	.	+	.	Parent=Os06t0164600-01
Chr06	irgsp1_rep	CDS	3280437	3280718	.	+	0	Parent=Os06t0164600-01
Chr06	irgsp1_rep	three_prime_UTR	3280719	3281129	.	+	.	Parent=Os06t0164600-01
Chr06	irgsp1_rep	three_prime_UTR	3281538	3284292	.	+	.	Parent=Os06t0164600-01
Chr06	irgsp1_rep	three_prime_UTR	3284418	3284730	.	+	.	Parent=Os06t0164600-01
Chr06	irgsp1_rep	mRNA	3285541	3286294	.	+	.	ID=Os06t0164800-01;Name=Os06t0164800-01;Locus_id=Os06g0164800;Note=Hypothetical conserved gene.;Transcript_evidence=AK108018 (DDBJ%2C Best hit);ORF_evidence=B9FRP3 (UniProt);NIAS_FLcDNA=002-135-H12;Expression=AK108018;TENOR=Os06t0164800-01;KEGG=Os06t0164800-01
Chr06	irgsp1_rep	five_prime_UTR	3285541	3285542	.	+	.	Parent=Os06t0164800-01
Chr06	irgsp1_rep	CDS	3285543	3285771	.	+	0	Parent=Os06t0164800-01
Chr06	irgsp1_rep	CDS	3285859	3285890	.	+	2	Parent=Os06t0164800-01
Chr06	irgsp1_rep	three_prime_UTR	3285891	3286294	.	+	.	Parent=Os06t0164800-01
Chr06	irgsp1_rep	mRNA	3286611	3296253	.	-	.	ID=Os06t0164900-00;Name=Os06t0164900-00;Locus_id=Os06g0164900;Note=Similar to OSIGBa0147J19.7 protein.;Transcript_evidence=AK369457 (DDBJ);ORF_evidence=Q01KM2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os06t0164900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	3295464	3296253	.	-	0	Parent=Os06t0164900-00
Chr06	irgsp1_rep	CDS	3286675	3288401	.	-	2	Parent=Os06t0164900-00
Chr06	irgsp1_rep	three_prime_UTR	3286611	3286674	.	-	.	Parent=Os06t0164900-00
Chr06	irgsp1_rep	mRNA	3288219	3289505	.	+	.	ID=Os06t0165000-01;Name=Os06t0165000-01;Locus_id=Os06g0165000;Note=Hypothetical protein.;Transcript_evidence=AK064542 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-112-A08;Expression=AK064542;TENOR=Os06t0165000-01;KEGG=Os06t0165000-01
Chr06	irgsp1_rep	five_prime_UTR	3288219	3288669	.	+	.	Parent=Os06t0165000-01
Chr06	irgsp1_rep	CDS	3288670	3288966	.	+	0	Parent=Os06t0165000-01
Chr06	irgsp1_rep	three_prime_UTR	3288967	3289505	.	+	.	Parent=Os06t0165000-01
Chr06	irgsp1_rep	mRNA	3293141	3293809	.	+	.	ID=Os06t0165100-01;Name=Os06t0165100-01;Locus_id=Os06g0165100;Note=Non-protein coding transcript.;Transcript_evidence=AK109271 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-188-A07;TENOR=Os06t0165100-01
Chr06	irgsp1_rep	exon	3293141	3293346	.	+	.	Parent=Os06t0165100-01
Chr06	irgsp1_rep	exon	3293428	3293809	.	+	.	Parent=Os06t0165100-01
Chr06	irgsp1_rep	mRNA	3300485	3303145	.	-	.	ID=Os06t0165300-00;Name=Os06t0165300-00;Locus_id=Os06g0165300;Note=Transposase (putative)%2C gypsy type domain containing protein.;Transcript_evidence=tplb0014k20 (Wheat FLcDNA);ORF_evidence=NP_001056907.1 (RefSeq);InterPro=Transposase (putative)%2C gypsy type (IPR007321);TENOR=Os06t0165300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	3302367	3303145	.	-	0	Parent=Os06t0165300-00
Chr06	irgsp1_rep	CDS	3302231	3302252	.	-	1	Parent=Os06t0165300-00
Chr06	irgsp1_rep	three_prime_UTR	3302105	3302230	.	-	.	Parent=Os06t0165300-00
Chr06	irgsp1_rep	three_prime_UTR	3301765	3301936	.	-	.	Parent=Os06t0165300-00
Chr06	irgsp1_rep	three_prime_UTR	3301391	3301681	.	-	.	Parent=Os06t0165300-00
Chr06	irgsp1_rep	three_prime_UTR	3300485	3300605	.	-	.	Parent=Os06t0165300-00
Chr06	irgsp1_rep	mRNA	3305304	3307872	.	-	.	ID=Os06t0165500-00;Name=Os06t0165500-00;Locus_id=Os06g0165500;CGSNL Gene Symbol=RLCK198;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 198;Oryzabase Gene Symbol Synonym(s)=OsRLCK198;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 198;Note=Similar to OSIGBa0147J19.7 protein.;Transcript_evidence=AK365081 (DDBJ);ORF_evidence=Q01KM2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),PAN-1 domain (IPR003014),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18895;TENOR=Os06t0165500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	3305425	3307872	.	-	0	Parent=Os06t0165500-00
Chr06	irgsp1_rep	three_prime_UTR	3305304	3305424	.	-	.	Parent=Os06t0165500-00
Chr06	irgsp1_rep	mRNA	3310919	3311822	.	+	.	ID=Os06t0165600-01;Name=Os06t0165600-01;Locus_id=Os06g0165600;CGSNL Gene Symbol=DREB1D;CGSNL Gene Name=DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D;Oryzabase Gene Symbol Synonym(s)=OsDREB1D%2C CBF4%2C ERF116%2C OsERF#116%2C OsERF116%2C AP2/EREBP#054%2C AP2/EREBP54%2C OsCbf1%2C OsCBF1;Oryzabase Gene Name Synonym(s)=Dehydration-responsive element-binding protein 1D%2C Protein DREB1D%2C Protein C-repeat-binding factor 4%2C ethylene response factor 116%2C APETALA2/ethylene-responsive element binding protein 54;Note=CRT/DRE binding factor (Transcription factor RCBF4).;Transcript_evidence=AF243384 (DDBJ%2C Best hit);ORF_evidence=Q6J1A5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);Oryzabase=3115;Expression=AF243384;TENOR=Os06t0165600-01;KEGG=Os06t0165600-01
Chr06	irgsp1_rep	five_prime_UTR	3310919	3310942	.	+	.	Parent=Os06t0165600-01
Chr06	irgsp1_rep	CDS	3310943	3311704	.	+	0	Parent=Os06t0165600-01
Chr06	irgsp1_rep	three_prime_UTR	3311705	3311822	.	+	.	Parent=Os06t0165600-01
Chr06	irgsp1_rep	mRNA	3314114	3315452	.	+	.	ID=Os06t0165800-01;Name=Os06t0165800-01;Locus_id=Os06g0165800;Oryzabase Gene Symbol Synonym(s)=ROMT-16%2C ROMT16%2C COA1%2C CCoAOMT-1%2C OsROMT-16%2C OsROMT16%2C OsCOA1%2C OsCCoAOMT-1;Oryzabase Gene Name Synonym(s)=O-methyltransferase ROMT16%2C caffeoyl CoA O-methyltransferase 1;Note=Similar to Caffeoyl-CoA 3-O-methyltransferase (Fragment).;Transcript_evidence=AK065744 (DDBJ%2C Best hit);ORF_evidence=A9X9L7 (UniProt);GO=Molecular Function: O-methyltransferase activity (GO:0008171);InterPro=O-methyltransferase%2C family 3 (IPR002935);NIAS_FLcDNA=J013039L12;Oryzabase=11885;Expression=AK065744;TENOR=Os06t0165800-01;KEGG=Os06t0165800-01 (EC:2.1.1.104)
Chr06	irgsp1_rep	five_prime_UTR	3314114	3314181	.	+	.	Parent=Os06t0165800-01
Chr06	irgsp1_rep	CDS	3314182	3314313	.	+	0	Parent=Os06t0165800-01
Chr06	irgsp1_rep	CDS	3314412	3314491	.	+	0	Parent=Os06t0165800-01
Chr06	irgsp1_rep	CDS	3314590	3314734	.	+	1	Parent=Os06t0165800-01
Chr06	irgsp1_rep	CDS	3314828	3315253	.	+	0	Parent=Os06t0165800-01
Chr06	irgsp1_rep	three_prime_UTR	3315254	3315452	.	+	.	Parent=Os06t0165800-01
Chr06	irgsp1_rep	mRNA	3316737	3317378	.	+	.	ID=Os06t0165900-00;Name=Os06t0165900-00;Locus_id=Os06g0165900;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001174617.1 (RefSeq);TENOR=Os06t0165900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	3316737	3317378	.	+	0	Parent=Os06t0165900-00
Chr06	irgsp1_rep	mRNA	3319112	3322249	.	-	.	ID=Os06t0166000-01;Name=Os06t0166000-01;Locus_id=Os06g0166000;Oryzabase Gene Symbol Synonym(s)=OsFbox298%2C Os_F0486;Oryzabase Gene Name Synonym(s)=F-box protein 298;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK060317 (DDBJ%2C Best hit);ORF_evidence=NP_001151406.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=001-007-F01;Oryzabase=17078;Expression=AK060317;TENOR=Os06t0166000-01;KEGG=Os06t0166000-01
Chr06	irgsp1_rep	five_prime_UTR	3322210	3322249	.	-	.	Parent=Os06t0166000-01
Chr06	irgsp1_rep	CDS	3322076	3322209	.	-	0	Parent=Os06t0166000-01
Chr06	irgsp1_rep	CDS	3321844	3321990	.	-	1	Parent=Os06t0166000-01
Chr06	irgsp1_rep	CDS	3321555	3321690	.	-	1	Parent=Os06t0166000-01
Chr06	irgsp1_rep	CDS	3320909	3321007	.	-	0	Parent=Os06t0166000-01
Chr06	irgsp1_rep	CDS	3319419	3319619	.	-	0	Parent=Os06t0166000-01
Chr06	irgsp1_rep	three_prime_UTR	3319112	3319418	.	-	.	Parent=Os06t0166000-01
Chr06	irgsp1_rep	mRNA	3319140	3322249	.	-	.	ID=Os06t0166000-02;Name=Os06t0166000-02;Locus_id=Os06g0166000;Oryzabase Gene Symbol Synonym(s)=OsFbox298%2C Os_F0486;Oryzabase Gene Name Synonym(s)=F-box protein 298;Note=Similar to F-box domain containing protein.;Transcript_evidence=AK103152 (DDBJ%2C Best hit);ORF_evidence=NP_001147496.1 (RefSeq);InterPro=Leucine-rich repeat%2C cysteine-containing subtype (IPR006553),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033120O10;Oryzabase=17078;Expression=AK103152;TENOR=Os06t0166000-02;KEGG=Os06t0166000-02
Chr06	irgsp1_rep	five_prime_UTR	3322210	3322249	.	-	.	Parent=Os06t0166000-02
Chr06	irgsp1_rep	CDS	3322076	3322209	.	-	0	Parent=Os06t0166000-02
Chr06	irgsp1_rep	CDS	3321844	3321990	.	-	1	Parent=Os06t0166000-02
Chr06	irgsp1_rep	CDS	3321555	3321681	.	-	1	Parent=Os06t0166000-02
Chr06	irgsp1_rep	CDS	3320768	3321007	.	-	0	Parent=Os06t0166000-02
Chr06	irgsp1_rep	three_prime_UTR	3319140	3320767	.	-	.	Parent=Os06t0166000-02
Chr06	irgsp1_rep	mRNA	3321838	3322412	.	+	.	ID=Os06t0166050-00;Name=Os06t0166050-00;Locus_id=Os06g0166050;Note=Hypothetical gene.;Transcript_evidence=EU941382 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0166050-00;KEGG=Os06t0166050-00
Chr06	irgsp1_rep	five_prime_UTR	3321838	3321843	.	+	.	Parent=Os06t0166050-00
Chr06	irgsp1_rep	CDS	3321844	3322320	.	+	0	Parent=Os06t0166050-00
Chr06	irgsp1_rep	three_prime_UTR	3322321	3322412	.	+	.	Parent=Os06t0166050-00
Chr06	irgsp1_rep	mRNA	3322909	3327600	.	+	.	ID=Os06t0166100-01;Name=Os06t0166100-01;Locus_id=Os06g0166100;Note=FAR1 domain containing protein.;Transcript_evidence=AK066174 (DDBJ%2C Best hit);ORF_evidence=B8B386 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=FAR1 DNA binding domain (IPR004330),Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);NIAS_FLcDNA=J013056I21;Expression=AK066174;TENOR=Os06t0166100-01;KEGG=Os06t0166100-01
Chr06	irgsp1_rep	five_prime_UTR	3322909	3323212	.	+	.	Parent=Os06t0166100-01
Chr06	irgsp1_rep	five_prime_UTR	3323830	3323893	.	+	.	Parent=Os06t0166100-01
Chr06	irgsp1_rep	CDS	3323894	3325961	.	+	0	Parent=Os06t0166100-01
Chr06	irgsp1_rep	CDS	3326033	3326163	.	+	2	Parent=Os06t0166100-01
Chr06	irgsp1_rep	CDS	3326245	3326325	.	+	0	Parent=Os06t0166100-01
Chr06	irgsp1_rep	CDS	3326641	3326703	.	+	0	Parent=Os06t0166100-01
Chr06	irgsp1_rep	three_prime_UTR	3326704	3326714	.	+	.	Parent=Os06t0166100-01
Chr06	irgsp1_rep	three_prime_UTR	3326969	3327600	.	+	.	Parent=Os06t0166100-01
Chr06	irgsp1_rep	mRNA	3328557	3331513	.	+	.	ID=Os06t0166200-01;Name=Os06t0166200-01;Locus_id=Os06g0166200;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK106360 (DDBJ%2C Best hit);ORF_evidence=NP_001150644.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880),Domain of unknown function DUF88 (IPR021139);NIAS_FLcDNA=002-102-A12;Expression=AK106360;TENOR=Os06t0166200-01;KEGG=Os06t0166200-01
Chr06	irgsp1_rep	five_prime_UTR	3328557	3328595	.	+	.	Parent=Os06t0166200-01
Chr06	irgsp1_rep	CDS	3328596	3329828	.	+	0	Parent=Os06t0166200-01
Chr06	irgsp1_rep	three_prime_UTR	3329829	3329847	.	+	.	Parent=Os06t0166200-01
Chr06	irgsp1_rep	three_prime_UTR	3331034	3331513	.	+	.	Parent=Os06t0166200-01
Chr06	irgsp1_rep	mRNA	3337151	3338155	.	+	.	ID=Os06t0166400-01;Name=Os06t0166400-01;Locus_id=Os06g0166400;CGSNL Gene Symbol=ERF7;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 7;Oryzabase Gene Symbol Synonym(s)=OsERF#007%2C OsERF007%2C OsERF7%2C AP2/EREBP#142%2C AP2/EREBP142%2C DLN158%2C OsDLN158;Oryzabase Gene Name Synonym(s)=ethylene response factor 7%2C APETALA2/ethylene-responsive element binding protein 142%2C DLN repressor 158%2C DLN motif protein 158;Note=Similar to TINY-like protein (AP2 domain containing protein RAP2.10) (Fragment).;Transcript_evidence=AK107775 (DDBJ%2C Best hit);ORF_evidence=NP_001147519.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=002-133-B12;Oryzabase=10534;Expression=AK107775;TENOR=Os06t0166400-01;KEGG=Os06t0166400-01
Chr06	irgsp1_rep	five_prime_UTR	3337151	3337161	.	+	.	Parent=Os06t0166400-01
Chr06	irgsp1_rep	CDS	3337162	3337716	.	+	0	Parent=Os06t0166400-01
Chr06	irgsp1_rep	three_prime_UTR	3337717	3338155	.	+	.	Parent=Os06t0166400-01
Chr06	irgsp1_rep	mRNA	3342464	3346318	.	-	.	ID=Os06t0166500-01;Name=Os06t0166500-01;Locus_id=Os06g0166500;CGSNL Gene Symbol=IAA20;Oryzabase Gene Symbol Synonym(s)=OsIAA20;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 20%2C Indoleacetic Acid-Induced 20;Note=Similar to Auxin-responsive protein IAA20 (Indoleacetic acid-induced protein 20).;Transcript_evidence=AK102541 (DDBJ%2C Best hit);ORF_evidence=Q5VRR0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Aux/IAA-ARF-dimerisation (IPR011525);NIAS_FLcDNA=J033096K11;Oryzabase=10453;Expression=AK102541;TENOR=Os06t0166500-01;KEGG=Os06t0166500-01
Chr06	irgsp1_rep	five_prime_UTR	3346257	3346318	.	-	.	Parent=Os06t0166500-01
Chr06	irgsp1_rep	CDS	3346033	3346256	.	-	0	Parent=Os06t0166500-01
Chr06	irgsp1_rep	CDS	3345732	3345922	.	-	1	Parent=Os06t0166500-01
Chr06	irgsp1_rep	CDS	3342995	3343088	.	-	2	Parent=Os06t0166500-01
Chr06	irgsp1_rep	CDS	3342847	3342889	.	-	1	Parent=Os06t0166500-01
Chr06	irgsp1_rep	three_prime_UTR	3342464	3342846	.	-	.	Parent=Os06t0166500-01
Chr06	irgsp1_rep	mRNA	3360524	3363523	.	+	.	ID=Os06t0166900-01;Name=Os06t0166900-01;Locus_id=Os06g0166900;CGSNL Gene Symbol=RLCK199;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 199;Oryzabase Gene Symbol Synonym(s)=OsRLCK199;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 199;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK058497 (DDBJ%2C Best hit);ORF_evidence=B6T5E9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-016-E12;Oryzabase=18896;Expression=AK058497;TENOR=Os06t0166900-01;KEGG=Os06t0166900-01
Chr06	irgsp1_rep	five_prime_UTR	3360524	3360705	.	+	.	Parent=Os06t0166900-01
Chr06	irgsp1_rep	CDS	3360706	3360776	.	+	0	Parent=Os06t0166900-01
Chr06	irgsp1_rep	CDS	3361510	3361654	.	+	1	Parent=Os06t0166900-01
Chr06	irgsp1_rep	CDS	3362149	3362411	.	+	0	Parent=Os06t0166900-01
Chr06	irgsp1_rep	CDS	3362534	3363158	.	+	1	Parent=Os06t0166900-01
Chr06	irgsp1_rep	three_prime_UTR	3363159	3363523	.	+	.	Parent=Os06t0166900-01
Chr06	irgsp1_rep	mRNA	3363900	3371061	.	-	.	ID=Os06t0167000-01;Name=Os06t0167000-01;Locus_id=Os06g0167000;Note=Similar to predicted protein.;Transcript_evidence=AK065529 (DDBJ%2C Best hit);ORF_evidence=NP_178124.1 (RefSeq);GO=Biological Process: nuclear mRNA splicing%2C via spliceosome (GO:0000398),Cellular Component: spliceosomal complex (GO:0005681);InterPro=PROCN (IPR012592);NIAS_FLcDNA=J013031D19;Expression=AK065529;TENOR=Os06t0167000-01;KEGG=Os06t0167000-01
Chr06	irgsp1_rep	CDS	3370685	3371061	.	-	0	Parent=Os06t0167000-01
Chr06	irgsp1_rep	CDS	3370059	3370574	.	-	1	Parent=Os06t0167000-01
Chr06	irgsp1_rep	CDS	3365586	3365598	.	-	1	Parent=Os06t0167000-01
Chr06	irgsp1_rep	three_prime_UTR	3365483	3365585	.	-	.	Parent=Os06t0167000-01
Chr06	irgsp1_rep	three_prime_UTR	3365197	3365394	.	-	.	Parent=Os06t0167000-01
Chr06	irgsp1_rep	three_prime_UTR	3364828	3365106	.	-	.	Parent=Os06t0167000-01
Chr06	irgsp1_rep	three_prime_UTR	3364466	3364708	.	-	.	Parent=Os06t0167000-01
Chr06	irgsp1_rep	three_prime_UTR	3363900	3364374	.	-	.	Parent=Os06t0167000-01
Chr06	irgsp1_rep	mRNA	3363959	3368261	.	-	.	ID=Os06t0167000-02;Name=Os06t0167000-02;Locus_id=Os06g0167000;Note=Similar to PRP8 protein (Fragment).;Transcript_evidence=AK099780 (DDBJ%2C Best hit);ORF_evidence=NP_178124.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Mov34/MPN/PAD-1 (IPR000555),PRO%2C C-terminal (IPR012984),Pre-mRNA-processing-splicing factor 8%2C U6-snRNA-binding (IPR019580),Pre-mRNA-processing-splicing factor 8%2C U5-snRNA-binding (IPR019581),PRP8 domain IV core (IPR021983);NIAS_FLcDNA=J013095K10;Expression=AK099780;TENOR=Os06t0167000-02;KEGG=Os06t0167000-02
Chr06	irgsp1_rep	five_prime_UTR	3368261	3368261	.	-	.	Parent=Os06t0167000-02
Chr06	irgsp1_rep	CDS	3366778	3368260	.	-	0	Parent=Os06t0167000-02
Chr06	irgsp1_rep	CDS	3366587	3366693	.	-	2	Parent=Os06t0167000-02
Chr06	irgsp1_rep	CDS	3366217	3366471	.	-	0	Parent=Os06t0167000-02
Chr06	irgsp1_rep	CDS	3365483	3366118	.	-	0	Parent=Os06t0167000-02
Chr06	irgsp1_rep	CDS	3365197	3365394	.	-	0	Parent=Os06t0167000-02
Chr06	irgsp1_rep	CDS	3364828	3365106	.	-	0	Parent=Os06t0167000-02
Chr06	irgsp1_rep	CDS	3364466	3364708	.	-	0	Parent=Os06t0167000-02
Chr06	irgsp1_rep	CDS	3364183	3364374	.	-	0	Parent=Os06t0167000-02
Chr06	irgsp1_rep	three_prime_UTR	3363959	3364182	.	-	.	Parent=Os06t0167000-02
Chr06	irgsp1_rep	mRNA	3363911	3366687	.	-	.	ID=Os06t0167000-03;Name=Os06t0167000-03;Locus_id=Os06g0167000;Note=Similar to predicted protein.;Transcript_evidence=AK066230 (DDBJ%2C Best hit);ORF_evidence=NP_178124.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Mov34/MPN/PAD-1 (IPR000555),PRO%2C C-terminal (IPR012984),PRP8 domain IV core (IPR021983);NIAS_FLcDNA=J013057K01;Expression=AK066230;TENOR=Os06t0167000-03;KEGG=Os06t0167000-03
Chr06	irgsp1_rep	five_prime_UTR	3366686	3366687	.	-	.	Parent=Os06t0167000-03
Chr06	irgsp1_rep	CDS	3366587	3366685	.	-	0	Parent=Os06t0167000-03
Chr06	irgsp1_rep	CDS	3366217	3366471	.	-	0	Parent=Os06t0167000-03
Chr06	irgsp1_rep	CDS	3365483	3366118	.	-	0	Parent=Os06t0167000-03
Chr06	irgsp1_rep	CDS	3365197	3365394	.	-	0	Parent=Os06t0167000-03
Chr06	irgsp1_rep	CDS	3364828	3365106	.	-	0	Parent=Os06t0167000-03
Chr06	irgsp1_rep	CDS	3364466	3364708	.	-	0	Parent=Os06t0167000-03
Chr06	irgsp1_rep	CDS	3364183	3364374	.	-	0	Parent=Os06t0167000-03
Chr06	irgsp1_rep	three_prime_UTR	3363911	3364182	.	-	.	Parent=Os06t0167000-03
Chr06	irgsp1_rep	mRNA	3363911	3365637	.	-	.	ID=Os06t0167000-04;Name=Os06t0167000-04;Locus_id=Os06g0167000;Note=Similar to predicted protein.;Transcript_evidence=AK062042 (DDBJ%2C Best hit);ORF_evidence=NP_178124.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Mov34/MPN/PAD-1 (IPR000555),PRO%2C C-terminal (IPR012984);NIAS_FLcDNA=001-044-A05;Expression=AK062042;TENOR=Os06t0167000-04;KEGG=Os06t0167000-04
Chr06	irgsp1_rep	five_prime_UTR	3365636	3365637	.	-	.	Parent=Os06t0167000-04
Chr06	irgsp1_rep	CDS	3365483	3365635	.	-	0	Parent=Os06t0167000-04
Chr06	irgsp1_rep	CDS	3365197	3365394	.	-	0	Parent=Os06t0167000-04
Chr06	irgsp1_rep	CDS	3364828	3365106	.	-	0	Parent=Os06t0167000-04
Chr06	irgsp1_rep	CDS	3364466	3364708	.	-	0	Parent=Os06t0167000-04
Chr06	irgsp1_rep	CDS	3364183	3364374	.	-	0	Parent=Os06t0167000-04
Chr06	irgsp1_rep	three_prime_UTR	3363911	3364182	.	-	.	Parent=Os06t0167000-04
Chr06	irgsp1_rep	mRNA	3376576	3386400	.	+	.	ID=Os06t0167100-01;Name=Os06t0167100-01;Locus_id=Os06g0167100;Oryzabase Gene Name Synonym(s)=AP-1 complex subunit gamma-1;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK101686 (DDBJ%2C Best hit);ORF_evidence=B6SV75 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: protein transport (GO:0015031),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: Golgi apparatus (GO:0005794),Cellular Component: membrane coat (GO:0030117),Cellular Component: clathrin adaptor complex (GO:0030131),Cellular Component: Golgi apparatus part (GO:0044431),Molecular Function: binding (GO:0005488),Molecular Function: protein transporter activity (GO:0008565);InterPro=Clathrin/coatomer adaptor%2C adaptin-like%2C N-terminal (IPR002553),Clathrin adaptor%2C alpha/beta/gamma-adaptin%2C appendage%2C Ig-like subdomain (IPR008152),Clathrin adaptor%2C gamma-adaptin%2C appendage (IPR008153),Armadillo-like helical (IPR011989),Coatomer/clathrin adaptor appendage%2C Ig-like subdomain (IPR013041),Armadillo-type fold (IPR016024),Adaptor protein complex AP-1%2C gamma subunit (IPR017107);NIAS_FLcDNA=J033058P13;Oryzabase=21060;Expression=AK101686;TENOR=Os06t0167100-01;KEGG=Os06t0167100-01
Chr06	irgsp1_rep	five_prime_UTR	3376576	3376764	.	+	.	Parent=Os06t0167100-01
Chr06	irgsp1_rep	CDS	3376765	3376808	.	+	0	Parent=Os06t0167100-01
Chr06	irgsp1_rep	CDS	3376906	3377208	.	+	1	Parent=Os06t0167100-01
Chr06	irgsp1_rep	CDS	3377307	3377448	.	+	1	Parent=Os06t0167100-01
Chr06	irgsp1_rep	CDS	3377824	3377997	.	+	0	Parent=Os06t0167100-01
Chr06	irgsp1_rep	CDS	3379047	3379226	.	+	0	Parent=Os06t0167100-01
Chr06	irgsp1_rep	CDS	3379573	3379727	.	+	0	Parent=Os06t0167100-01
Chr06	irgsp1_rep	CDS	3380517	3380607	.	+	1	Parent=Os06t0167100-01
Chr06	irgsp1_rep	CDS	3381031	3381194	.	+	0	Parent=Os06t0167100-01
Chr06	irgsp1_rep	CDS	3381799	3381853	.	+	1	Parent=Os06t0167100-01
Chr06	irgsp1_rep	CDS	3381952	3382074	.	+	0	Parent=Os06t0167100-01
Chr06	irgsp1_rep	CDS	3382168	3382263	.	+	0	Parent=Os06t0167100-01
Chr06	irgsp1_rep	CDS	3382714	3382841	.	+	0	Parent=Os06t0167100-01
Chr06	irgsp1_rep	CDS	3383415	3383519	.	+	1	Parent=Os06t0167100-01
Chr06	irgsp1_rep	CDS	3383615	3383904	.	+	1	Parent=Os06t0167100-01
Chr06	irgsp1_rep	CDS	3384135	3384245	.	+	2	Parent=Os06t0167100-01
Chr06	irgsp1_rep	CDS	3384326	3384403	.	+	2	Parent=Os06t0167100-01
Chr06	irgsp1_rep	CDS	3384495	3384667	.	+	2	Parent=Os06t0167100-01
Chr06	irgsp1_rep	CDS	3385200	3385304	.	+	0	Parent=Os06t0167100-01
Chr06	irgsp1_rep	CDS	3386025	3386120	.	+	0	Parent=Os06t0167100-01
Chr06	irgsp1_rep	three_prime_UTR	3386121	3386400	.	+	.	Parent=Os06t0167100-01
Chr06	irgsp1_rep	mRNA	3383620	3386418	.	+	.	ID=Os06t0167100-02;Name=Os06t0167100-02;Locus_id=Os06g0167100;Oryzabase Gene Name Synonym(s)=AP-1 complex subunit gamma-1;Note=Similar to AP-1 complex subunit gamma-1.;Transcript_evidence=AK059117 (DDBJ%2C Best hit);ORF_evidence=B6SV75 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: protein transport (GO:0015031),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: Golgi apparatus (GO:0005794),Cellular Component: clathrin adaptor complex (GO:0030131),Cellular Component: Golgi apparatus part (GO:0044431),Molecular Function: protein transporter activity (GO:0008565);InterPro=Clathrin adaptor%2C alpha/beta/gamma-adaptin%2C appendage%2C Ig-like subdomain (IPR008152),Clathrin adaptor%2C gamma-adaptin%2C appendage (IPR008153),Coatomer/clathrin adaptor appendage%2C Ig-like subdomain (IPR013041),Adaptor protein complex AP-1%2C gamma subunit (IPR017107);NIAS_FLcDNA=001-022-E10;Oryzabase=21060;Expression=AK059117;TENOR=Os06t0167100-02;KEGG=Os06t0167100-02
Chr06	irgsp1_rep	five_prime_UTR	3383620	3383621	.	+	.	Parent=Os06t0167100-02
Chr06	irgsp1_rep	CDS	3383622	3383904	.	+	0	Parent=Os06t0167100-02
Chr06	irgsp1_rep	CDS	3384135	3384245	.	+	2	Parent=Os06t0167100-02
Chr06	irgsp1_rep	CDS	3384326	3384403	.	+	2	Parent=Os06t0167100-02
Chr06	irgsp1_rep	CDS	3384495	3384667	.	+	2	Parent=Os06t0167100-02
Chr06	irgsp1_rep	CDS	3385200	3385304	.	+	0	Parent=Os06t0167100-02
Chr06	irgsp1_rep	CDS	3386025	3386120	.	+	0	Parent=Os06t0167100-02
Chr06	irgsp1_rep	three_prime_UTR	3386121	3386418	.	+	.	Parent=Os06t0167100-02
Chr06	irgsp1_rep	mRNA	3385199	3386449	.	-	.	ID=Os06t0167125-00;Name=Os06t0167125-00;Locus_id=Os06g0167125;Note=Non-protein coding transcript.;Transcript_evidence=BT016958 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0167125-00
Chr06	irgsp1_rep	exon	3386021	3386449	.	-	.	Parent=Os06t0167125-00
Chr06	irgsp1_rep	exon	3385199	3385300	.	-	.	Parent=Os06t0167125-00
Chr06	irgsp1_rep	mRNA	3388823	3390644	.	+	.	ID=Os06t0167150-01;Name=Os06t0167150-01;Locus_id=Os06g0167150;Note=Hypothetical gene.;Transcript_evidence=AK242224 (DDBJ%2C Best hit);ORF_evidence=NP_001174618.1 (RefSeq);NIAS_FLcDNA=J075174E02;TENOR=Os06t0167150-01;KEGG=Os06t0167150-01
Chr06	irgsp1_rep	five_prime_UTR	3388823	3389123	.	+	.	Parent=Os06t0167150-01
Chr06	irgsp1_rep	CDS	3389124	3389707	.	+	0	Parent=Os06t0167150-01
Chr06	irgsp1_rep	CDS	3390071	3390335	.	+	1	Parent=Os06t0167150-01
Chr06	irgsp1_rep	three_prime_UTR	3390336	3390644	.	+	.	Parent=Os06t0167150-01
Chr06	irgsp1_rep	mRNA	3389074	3390445	.	-	.	ID=Os06t0167200-01;Name=Os06t0167200-01;Locus_id=Os06g0167200;Note=Similar to RING-H2 finger protein ATL1R (RING-H2 finger protein ATL8).;Transcript_evidence=AK100240 (DDBJ%2C Best hit);ORF_evidence=A2Y9S1 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J023054P08;Expression=AK100240;TENOR=Os06t0167200-01;KEGG=Os06t0167200-01
Chr06	irgsp1_rep	five_prime_UTR	3390276	3390445	.	-	.	Parent=Os06t0167200-01
Chr06	irgsp1_rep	CDS	3389184	3390275	.	-	0	Parent=Os06t0167200-01
Chr06	irgsp1_rep	three_prime_UTR	3389074	3389183	.	-	.	Parent=Os06t0167200-01
Chr06	irgsp1_rep	mRNA	3405405	3407716	.	+	.	ID=Os06t0167400-01;Name=Os06t0167400-01;Locus_id=Os06g0167400;Note=Di-trans-poly-cis-decaprenylcistransferase family protein.;Transcript_evidence=AK102123 (DDBJ%2C Best hit);ORF_evidence=B6TD36 (UniProt);GO=Molecular Function: transferase activity%2C transferring alkyl or aryl (other than methyl) groups (GO:0016765);InterPro=Di-trans-poly-cis-decaprenylcistransferase-like (IPR001441),Di-trans-poly-cis-decaprenylcistransferase-like%2C conserved site (IPR018520);NIAS_FLcDNA=J033084O09;Expression=AK102123;TENOR=Os06t0167400-01;KEGG=Os06t0167400-01 (EC:2.5.1.-)
Chr06	irgsp1_rep	five_prime_UTR	3405405	3405534	.	+	.	Parent=Os06t0167400-01
Chr06	irgsp1_rep	five_prime_UTR	3406393	3406433	.	+	.	Parent=Os06t0167400-01
Chr06	irgsp1_rep	CDS	3406434	3406469	.	+	0	Parent=Os06t0167400-01
Chr06	irgsp1_rep	CDS	3406646	3407509	.	+	0	Parent=Os06t0167400-01
Chr06	irgsp1_rep	three_prime_UTR	3407510	3407716	.	+	.	Parent=Os06t0167400-01
Chr06	irgsp1_rep	mRNA	3408660	3418587	.	+	.	ID=Os06t0167500-01;Name=Os06t0167500-01;Locus_id=Os06g0167500;Note=Leucine-rich repeat%2C plant specific containing protein.;Transcript_evidence=AK069490 (DDBJ%2C Best hit);ORF_evidence=B8B391 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Malectin (IPR021720);NIAS_FLcDNA=J023022E12;Expression=AK069490;TENOR=Os06t0167500-01;KEGG=Os06t0167500-01
Chr06	irgsp1_rep	five_prime_UTR	3408660	3408670	.	+	.	Parent=Os06t0167500-01
Chr06	irgsp1_rep	CDS	3408671	3409007	.	+	0	Parent=Os06t0167500-01
Chr06	irgsp1_rep	CDS	3409127	3409286	.	+	2	Parent=Os06t0167500-01
Chr06	irgsp1_rep	CDS	3409385	3409456	.	+	1	Parent=Os06t0167500-01
Chr06	irgsp1_rep	CDS	3410607	3410678	.	+	1	Parent=Os06t0167500-01
Chr06	irgsp1_rep	CDS	3411479	3411547	.	+	1	Parent=Os06t0167500-01
Chr06	irgsp1_rep	CDS	3411959	3412030	.	+	1	Parent=Os06t0167500-01
Chr06	irgsp1_rep	CDS	3412111	3412182	.	+	1	Parent=Os06t0167500-01
Chr06	irgsp1_rep	CDS	3412889	3412960	.	+	1	Parent=Os06t0167500-01
Chr06	irgsp1_rep	CDS	3413068	3413142	.	+	1	Parent=Os06t0167500-01
Chr06	irgsp1_rep	CDS	3413682	3413750	.	+	1	Parent=Os06t0167500-01
Chr06	irgsp1_rep	CDS	3415001	3415066	.	+	1	Parent=Os06t0167500-01
Chr06	irgsp1_rep	CDS	3416046	3416114	.	+	1	Parent=Os06t0167500-01
Chr06	irgsp1_rep	CDS	3416205	3416249	.	+	1	Parent=Os06t0167500-01
Chr06	irgsp1_rep	CDS	3417004	3417065	.	+	1	Parent=Os06t0167500-01
Chr06	irgsp1_rep	CDS	3417278	3417636	.	+	2	Parent=Os06t0167500-01
Chr06	irgsp1_rep	CDS	3417760	3417946	.	+	0	Parent=Os06t0167500-01
Chr06	irgsp1_rep	CDS	3418048	3418232	.	+	2	Parent=Os06t0167500-01
Chr06	irgsp1_rep	three_prime_UTR	3418233	3418587	.	+	.	Parent=Os06t0167500-01
Chr06	irgsp1_rep	mRNA	3410752	3418546	.	+	.	ID=Os06t0167500-02;Name=Os06t0167500-02;Locus_id=Os06g0167500;Note=Hypothetical conserved gene.;Transcript_evidence=AK066842 (DDBJ%2C Best hit);ORF_evidence=B8B391 (UniProt);NIAS_FLcDNA=J013084A11;Expression=AK066842;TENOR=Os06t0167500-02;KEGG=Os06t0167500-02
Chr06	irgsp1_rep	five_prime_UTR	3410752	3411332	.	+	.	Parent=Os06t0167500-02
Chr06	irgsp1_rep	CDS	3411333	3411551	.	+	0	Parent=Os06t0167500-02
Chr06	irgsp1_rep	three_prime_UTR	3411552	3412030	.	+	.	Parent=Os06t0167500-02
Chr06	irgsp1_rep	three_prime_UTR	3412111	3412182	.	+	.	Parent=Os06t0167500-02
Chr06	irgsp1_rep	three_prime_UTR	3412889	3412943	.	+	.	Parent=Os06t0167500-02
Chr06	irgsp1_rep	three_prime_UTR	3413068	3413750	.	+	.	Parent=Os06t0167500-02
Chr06	irgsp1_rep	three_prime_UTR	3415001	3415066	.	+	.	Parent=Os06t0167500-02
Chr06	irgsp1_rep	three_prime_UTR	3416046	3416114	.	+	.	Parent=Os06t0167500-02
Chr06	irgsp1_rep	three_prime_UTR	3416205	3416249	.	+	.	Parent=Os06t0167500-02
Chr06	irgsp1_rep	three_prime_UTR	3417004	3417065	.	+	.	Parent=Os06t0167500-02
Chr06	irgsp1_rep	three_prime_UTR	3417278	3417636	.	+	.	Parent=Os06t0167500-02
Chr06	irgsp1_rep	three_prime_UTR	3417760	3417946	.	+	.	Parent=Os06t0167500-02
Chr06	irgsp1_rep	three_prime_UTR	3418048	3418546	.	+	.	Parent=Os06t0167500-02
Chr06	irgsp1_rep	mRNA	3411888	3418546	.	+	.	ID=Os06t0167500-03;Name=Os06t0167500-03;Locus_id=Os06g0167500;Note=Hypothetical conserved gene.;Transcript_evidence=AK100574 (DDBJ%2C Best hit);ORF_evidence=B8B391 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=J023105F17;Expression=AK100574;TENOR=Os06t0167500-03;KEGG=Os06t0167500-03
Chr06	irgsp1_rep	five_prime_UTR	3411888	3411938	.	+	.	Parent=Os06t0167500-03
Chr06	irgsp1_rep	CDS	3411939	3412030	.	+	0	Parent=Os06t0167500-03
Chr06	irgsp1_rep	CDS	3412111	3412182	.	+	1	Parent=Os06t0167500-03
Chr06	irgsp1_rep	CDS	3412889	3412960	.	+	1	Parent=Os06t0167500-03
Chr06	irgsp1_rep	CDS	3413068	3413142	.	+	1	Parent=Os06t0167500-03
Chr06	irgsp1_rep	CDS	3413682	3413754	.	+	1	Parent=Os06t0167500-03
Chr06	irgsp1_rep	three_prime_UTR	3413755	3415066	.	+	.	Parent=Os06t0167500-03
Chr06	irgsp1_rep	three_prime_UTR	3416046	3416114	.	+	.	Parent=Os06t0167500-03
Chr06	irgsp1_rep	three_prime_UTR	3416205	3416249	.	+	.	Parent=Os06t0167500-03
Chr06	irgsp1_rep	three_prime_UTR	3417004	3417065	.	+	.	Parent=Os06t0167500-03
Chr06	irgsp1_rep	three_prime_UTR	3417278	3417636	.	+	.	Parent=Os06t0167500-03
Chr06	irgsp1_rep	three_prime_UTR	3417760	3417946	.	+	.	Parent=Os06t0167500-03
Chr06	irgsp1_rep	three_prime_UTR	3418048	3418546	.	+	.	Parent=Os06t0167500-03
Chr06	irgsp1_rep	mRNA	3420507	3421462	.	+	.	ID=Os06t0167600-01;Name=Os06t0167600-01;Locus_id=Os06g0167600;Note=Similar to Proteasome subunit alpha-3 (Fragment).;Transcript_evidence=AK067977 (DDBJ%2C Best hit);ORF_evidence=P0C8Y9 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603),Cellular Component: proteasome core complex (GO:0005839),Cellular Component: proteasome core complex%2C alpha-subunit complex (GO:0019773),Molecular Function: endopeptidase activity (GO:0004175),Molecular Function: threonine-type endopeptidase activity (GO:0004298);InterPro=Proteasome%2C alpha-subunit%2C conserved site (IPR000426),Proteasome%2C subunit alpha/beta (IPR001353),Proteasome A-type subunit (IPR023332);NIAS_FLcDNA=J013123K20;Expression=AK067977;TENOR=Os06t0167600-01;KEGG=Os06t0167600-01 (EC:3.4.25.1)
Chr06	irgsp1_rep	five_prime_UTR	3420507	3420592	.	+	.	Parent=Os06t0167600-01
Chr06	irgsp1_rep	CDS	3420593	3421345	.	+	0	Parent=Os06t0167600-01
Chr06	irgsp1_rep	three_prime_UTR	3421346	3421462	.	+	.	Parent=Os06t0167600-01
Chr06	irgsp1_rep	mRNA	3428704	3433378	.	+	.	ID=Os06t0168000-01;Name=Os06t0168000-01;Locus_id=Os06g0168000;Note=Glutathione S-transferase%2C C-terminal-like domain containing protein.;Transcript_evidence=AK059250 (DDBJ%2C Best hit),AK099356 (DDBJ%2C Best hit);ORF_evidence=Q5VRG1 (UniProt);GO=Biological Process: protein targeting to mitochondrion (GO:0006626),Cellular Component: mitochondrial outer membrane (GO:0005741);InterPro=Glutathione S-transferase%2C C-terminal-like (IPR010987),Mitochondrial outer membrane transport complex protein%2C metaxin (IPR017410);NIAS_FLcDNA=001-024-G12,J033040E19;Expression=AK059250;TENOR=Os06t0168000-01;KEGG=Os06t0168000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	3428704	3428914	.	+	0	Parent=Os06t0168000-01
Chr06	irgsp1_rep	CDS	3429864	3430204	.	+	2	Parent=Os06t0168000-01
Chr06	irgsp1_rep	CDS	3430294	3430370	.	+	0	Parent=Os06t0168000-01
Chr06	irgsp1_rep	CDS	3430517	3430577	.	+	1	Parent=Os06t0168000-01
Chr06	irgsp1_rep	CDS	3430860	3431031	.	+	0	Parent=Os06t0168000-01
Chr06	irgsp1_rep	CDS	3433015	3433193	.	+	2	Parent=Os06t0168000-01
Chr06	irgsp1_rep	three_prime_UTR	3433194	3433378	.	+	.	Parent=Os06t0168000-01
Chr06	irgsp1_rep	mRNA	3431958	3432897	.	+	.	ID=Os06t0168150-00;Name=Os06t0168150-00;Locus_id=Os06g0168150;Note=Hypothetical gene.;Transcript_evidence=CU405671 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os06t0168150-00;KEGG=Os06t0168150-00
Chr06	irgsp1_rep	five_prime_UTR	3431958	3432071	.	+	.	Parent=Os06t0168150-00
Chr06	irgsp1_rep	CDS	3432072	3432530	.	+	0	Parent=Os06t0168150-00
Chr06	irgsp1_rep	three_prime_UTR	3432531	3432897	.	+	.	Parent=Os06t0168150-00
Chr06	irgsp1_rep	mRNA	3440104	3443075	.	+	.	ID=Os06t0168400-01;Name=Os06t0168400-01;Locus_id=Os06g0168400;Note=RNA polymerase Rpb7%2C N-terminal domain containing protein.;Transcript_evidence=AK109865 (DDBJ%2C Best hit);ORF_evidence=NP_565115.1 (RefSeq);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899);InterPro=RNA polymerase Rpb7%2C N-terminal (IPR005576);NIAS_FLcDNA=002-148-H10;Expression=AK109865;TENOR=Os06t0168400-01;KEGG=Os06t0168400-01 (EC:2.7.7.6)
Chr06	irgsp1_rep	five_prime_UTR	3440104	3440372	.	+	.	Parent=Os06t0168400-01
Chr06	irgsp1_rep	CDS	3440373	3440482	.	+	0	Parent=Os06t0168400-01
Chr06	irgsp1_rep	CDS	3440708	3440859	.	+	1	Parent=Os06t0168400-01
Chr06	irgsp1_rep	CDS	3441137	3441246	.	+	2	Parent=Os06t0168400-01
Chr06	irgsp1_rep	CDS	3441880	3442242	.	+	0	Parent=Os06t0168400-01
Chr06	irgsp1_rep	three_prime_UTR	3442243	3442581	.	+	.	Parent=Os06t0168400-01
Chr06	irgsp1_rep	three_prime_UTR	3442687	3443075	.	+	.	Parent=Os06t0168400-01
Chr06	irgsp1_rep	mRNA	3445034	3448312	.	-	.	ID=Os06t0168500-01;Name=Os06t0168500-01;Locus_id=Os06g0168500;CGSNL Gene Symbol=SYP131;CGSNL Gene Name=SYNTAXIN OF PLANTS 131;Oryzabase Gene Symbol Synonym(s)=OsSYP131;Oryzabase Gene Name Synonym(s)=Syntaxin of Plants131;Note=Similar to Syntaxin-like protein (Fragment).;Transcript_evidence=AK100316 (DDBJ%2C Best hit);ORF_evidence=NP_568187.1 (RefSeq);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: membrane (GO:0016020),Molecular Function: SNAP receptor activity (GO:0005484),Molecular Function: protein binding (GO:0005515);InterPro=Target SNARE coiled-coil domain (IPR000727),Syntaxin%2C N-terminal (IPR006011),Syntaxin/epimorphin%2C conserved site (IPR006012),t-SNARE (IPR010989);NIAS_FLcDNA=J023078P03;Oryzabase=23012;Expression=AK100316;TENOR=Os06t0168500-01;KEGG=Os06t0168500-01
Chr06	irgsp1_rep	five_prime_UTR	3448125	3448312	.	-	.	Parent=Os06t0168500-01
Chr06	irgsp1_rep	CDS	3448107	3448124	.	-	0	Parent=Os06t0168500-01
Chr06	irgsp1_rep	CDS	3447317	3447433	.	-	0	Parent=Os06t0168500-01
Chr06	irgsp1_rep	CDS	3447179	3447235	.	-	0	Parent=Os06t0168500-01
Chr06	irgsp1_rep	CDS	3446895	3446943	.	-	0	Parent=Os06t0168500-01
Chr06	irgsp1_rep	CDS	3446701	3446789	.	-	2	Parent=Os06t0168500-01
Chr06	irgsp1_rep	CDS	3446506	3446579	.	-	0	Parent=Os06t0168500-01
Chr06	irgsp1_rep	CDS	3446371	3446413	.	-	1	Parent=Os06t0168500-01
Chr06	irgsp1_rep	CDS	3446117	3446177	.	-	0	Parent=Os06t0168500-01
Chr06	irgsp1_rep	CDS	3445988	3446013	.	-	2	Parent=Os06t0168500-01
Chr06	irgsp1_rep	CDS	3445831	3445908	.	-	0	Parent=Os06t0168500-01
Chr06	irgsp1_rep	CDS	3445652	3445732	.	-	0	Parent=Os06t0168500-01
Chr06	irgsp1_rep	CDS	3445515	3445580	.	-	0	Parent=Os06t0168500-01
Chr06	irgsp1_rep	CDS	3445248	3445406	.	-	0	Parent=Os06t0168500-01
Chr06	irgsp1_rep	three_prime_UTR	3445034	3445247	.	-	.	Parent=Os06t0168500-01
Chr06	irgsp1_rep	mRNA	3449701	3454747	.	-	.	ID=Os06t0168600-01;Name=Os06t0168600-01;Locus_id=Os06g0168600;RAP-DB Gene Symbol Synonym(s)=V3%2C v3%2C RNRL1%2C rnrl1;RAP-DB Gene Name Synonym(s)=VIRESCENT 3%2C virescent3%2C virescent 3%2C virescent-3%2C ribonucleotide reductase large subunit 1.;CGSNL Gene Symbol=V3;CGSNL Gene Name=VIRESCENT 3;Oryzabase Gene Symbol Synonym(s)=v3%2C RNRL1%2C rnrl1%2C RNR1%2C RNRL%2C Osv3%2C OsRNRL1%2C OsRNR1%2C OsRNRL;Oryzabase Gene Name Synonym(s)=virescent3%2C virescent 3%2C virescent-3%2C ribonucleotide reductase large subunit 1%2C RIBONUCLEOTIDE REDUCTASE 1;Note=Ribonucleotide reductase%2C Chloroplast biogenesis;Transcript_evidence=EU602344 (Genbank),AK068858 (Genbank);ORF_evidence=B2M117 (UniProt),Q5VRF5 (UniProt);GO=Biological Process: DNA replication (GO:0006260),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: ribonucleoside-diphosphate reductase complex (GO:0005971),Molecular Function: ribonucleoside-diphosphate reductase activity (GO:0004748),Molecular Function: ATP binding (GO:0005524);InterPro=Ribonucleotide reductase large subunit%2C C-terminal (IPR000788),ATP-cone (IPR005144),Ribonucleotide reductase R1 subunit%2C N-terminal (IPR008926),Ribonucleoside-diphosphate reductase%2C alpha subunit (IPR013346),Ribonucleotide reductase large subunit%2C N-terminal (IPR013509);NIAS_FLcDNA=J013169B12;Manual Curation=June 8%2C 2009;Literature_PMID=19297585;Oryzabase=749;Expression=AK068858;TENOR=Os06t0168600-01;KEGG=Os06t0168600-01 (EC:1.17.4.1)
Chr06	irgsp1_rep	five_prime_UTR	3454490	3454747	.	-	.	Parent=Os06t0168600-01
Chr06	irgsp1_rep	CDS	3454262	3454489	.	-	0	Parent=Os06t0168600-01
Chr06	irgsp1_rep	CDS	3454107	3454168	.	-	0	Parent=Os06t0168600-01
Chr06	irgsp1_rep	CDS	3453921	3454008	.	-	1	Parent=Os06t0168600-01
Chr06	irgsp1_rep	CDS	3453503	3453766	.	-	0	Parent=Os06t0168600-01
Chr06	irgsp1_rep	CDS	3453183	3453423	.	-	0	Parent=Os06t0168600-01
Chr06	irgsp1_rep	CDS	3453023	3453099	.	-	2	Parent=Os06t0168600-01
Chr06	irgsp1_rep	CDS	3452407	3452577	.	-	0	Parent=Os06t0168600-01
Chr06	irgsp1_rep	CDS	3452233	3452325	.	-	0	Parent=Os06t0168600-01
Chr06	irgsp1_rep	CDS	3451959	3452108	.	-	0	Parent=Os06t0168600-01
Chr06	irgsp1_rep	CDS	3451792	3451878	.	-	0	Parent=Os06t0168600-01
Chr06	irgsp1_rep	CDS	3451538	3451702	.	-	0	Parent=Os06t0168600-01
Chr06	irgsp1_rep	CDS	3451327	3451446	.	-	0	Parent=Os06t0168600-01
Chr06	irgsp1_rep	CDS	3450987	3451189	.	-	0	Parent=Os06t0168600-01
Chr06	irgsp1_rep	CDS	3450761	3450910	.	-	1	Parent=Os06t0168600-01
Chr06	irgsp1_rep	CDS	3450523	3450670	.	-	1	Parent=Os06t0168600-01
Chr06	irgsp1_rep	CDS	3450279	3450371	.	-	0	Parent=Os06t0168600-01
Chr06	irgsp1_rep	CDS	3450100	3450204	.	-	0	Parent=Os06t0168600-01
Chr06	irgsp1_rep	three_prime_UTR	3449701	3450099	.	-	.	Parent=Os06t0168600-01
Chr06	irgsp1_rep	mRNA	3455800	3456811	.	-	.	ID=Os06t0168700-01;Name=Os06t0168700-01;Locus_id=Os06g0168700;Oryzabase Gene Symbol Synonym(s)=OsHyPRP17%2C HyPRP17;Oryzabase Gene Name Synonym(s)=Extensin family protein%2C Hybrid Proline-Rich Protein 17;Note=Similar to Prolin rich protein.;Transcript_evidence=AK103637 (DDBJ%2C Best hit),AK101305 (DDBJ%2C Best hit);ORF_evidence=NP_001149720.1 (RefSeq);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=J033134F12,J033033M04;Oryzabase=21942;Expression=AK103637;TENOR=Os06t0168700-01;KEGG=Os06t0168700-01
Chr06	irgsp1_rep	five_prime_UTR	3456779	3456811	.	-	.	Parent=Os06t0168700-01
Chr06	irgsp1_rep	CDS	3456038	3456778	.	-	0	Parent=Os06t0168700-01
Chr06	irgsp1_rep	three_prime_UTR	3455800	3456037	.	-	.	Parent=Os06t0168700-01
Chr06	irgsp1_rep	mRNA	3460493	3465373	.	-	.	ID=Os06t0168800-01;Name=Os06t0168800-01;Locus_id=Os06g0168800;CGSNL Gene Symbol=RLCK200;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 200;Oryzabase Gene Symbol Synonym(s)=OsRLCK200%2C PTK7%2C OsPTK7;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 200%2C Protein Tyrosine Kinase 7;Note=Similar to Protein kinase.;Transcript_evidence=AK111753 (DDBJ%2C Best hit);ORF_evidence=C6ZRY2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J023055H24;Oryzabase=18897;Expression=AK111753;TENOR=Os06t0168800-01;KEGG=Os06t0168800-01
Chr06	irgsp1_rep	five_prime_UTR	3465235	3465373	.	-	.	Parent=Os06t0168800-01
Chr06	irgsp1_rep	CDS	3465066	3465234	.	-	0	Parent=Os06t0168800-01
Chr06	irgsp1_rep	CDS	3463494	3463798	.	-	2	Parent=Os06t0168800-01
Chr06	irgsp1_rep	CDS	3463285	3463420	.	-	0	Parent=Os06t0168800-01
Chr06	irgsp1_rep	CDS	3462234	3462367	.	-	2	Parent=Os06t0168800-01
Chr06	irgsp1_rep	CDS	3461999	3462122	.	-	0	Parent=Os06t0168800-01
Chr06	irgsp1_rep	CDS	3461066	3461416	.	-	2	Parent=Os06t0168800-01
Chr06	irgsp1_rep	CDS	3460780	3460796	.	-	2	Parent=Os06t0168800-01
Chr06	irgsp1_rep	three_prime_UTR	3460493	3460779	.	-	.	Parent=Os06t0168800-01
Chr06	irgsp1_rep	mRNA	3460493	3463719	.	-	.	ID=Os06t0168800-02;Name=Os06t0168800-02;Locus_id=Os06g0168800;CGSNL Gene Symbol=RLCK200;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 200;Oryzabase Gene Symbol Synonym(s)=OsRLCK200%2C PTK7%2C OsPTK7;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 200%2C Protein Tyrosine Kinase 7;Note=Similar to predicted protein.;Transcript_evidence=AK111943 (DDBJ%2C Best hit);ORF_evidence=C6ZRY2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-022-A03;Oryzabase=18897;Expression=AK111943;TENOR=Os06t0168800-02;KEGG=Os06t0168800-02
Chr06	irgsp1_rep	five_prime_UTR	3463719	3463719	.	-	.	Parent=Os06t0168800-02
Chr06	irgsp1_rep	CDS	3463494	3463718	.	-	0	Parent=Os06t0168800-02
Chr06	irgsp1_rep	CDS	3463285	3463420	.	-	0	Parent=Os06t0168800-02
Chr06	irgsp1_rep	CDS	3462234	3462367	.	-	2	Parent=Os06t0168800-02
Chr06	irgsp1_rep	CDS	3461999	3462122	.	-	0	Parent=Os06t0168800-02
Chr06	irgsp1_rep	CDS	3461066	3461416	.	-	2	Parent=Os06t0168800-02
Chr06	irgsp1_rep	CDS	3460780	3460796	.	-	2	Parent=Os06t0168800-02
Chr06	irgsp1_rep	three_prime_UTR	3460493	3460779	.	-	.	Parent=Os06t0168800-02
Chr06	irgsp1_rep	mRNA	3468467	3469940	.	+	.	ID=Os06t0168901-00;Name=Os06t0168901-00;Locus_id=Os06g0168901;Note=Hypothetical conserved gene.;Transcript_evidence=CT837860 (DDBJ%2C Best hit);ORF_evidence=Q5VRF0 (UniProt);InterPro=X8 (IPR012946);TENOR=Os06t0168901-00;KEGG=Os06t0168901-00
Chr06	irgsp1_rep	five_prime_UTR	3468467	3468864	.	+	.	Parent=Os06t0168901-00
Chr06	irgsp1_rep	CDS	3468865	3469026	.	+	0	Parent=Os06t0168901-00
Chr06	irgsp1_rep	CDS	3469374	3469796	.	+	0	Parent=Os06t0168901-00
Chr06	irgsp1_rep	three_prime_UTR	3469797	3469940	.	+	.	Parent=Os06t0168901-00
Chr06	irgsp1_rep	mRNA	3474629	3476370	.	+	.	ID=Os06t0169001-01;Name=Os06t0169001-01;Locus_id=Os06g0169001;Note=GOS9 protein.;Transcript_evidence=AK243234 (DDBJ%2C Best hit);ORF_evidence=P0C5C6 (UniProt);InterPro=Mannose-binding lectin (IPR001229);NIAS_FLcDNA=J100045G01;TENOR=Os06t0169001-01;KEGG=Os06t0169001-01
Chr06	irgsp1_rep	five_prime_UTR	3474629	3474676	.	+	.	Parent=Os06t0169001-01
Chr06	irgsp1_rep	CDS	3474677	3474679	.	+	0	Parent=Os06t0169001-01
Chr06	irgsp1_rep	CDS	3474838	3475038	.	+	0	Parent=Os06t0169001-01
Chr06	irgsp1_rep	CDS	3475748	3475963	.	+	0	Parent=Os06t0169001-01
Chr06	irgsp1_rep	three_prime_UTR	3475964	3476370	.	+	.	Parent=Os06t0169001-01
Chr06	irgsp1_rep	mRNA	3490289	3490874	.	+	.	ID=Os06t0169600-00;Name=Os06t0169600-00;Locus_id=Os06g0169600;Note=Similar to Beta-tubulin (Fragment).;Transcript_evidence=EU328534 (DDBJ);ORF_evidence=Q3C175 (UniProt);GO=Biological Process: microtubule-based process (GO:0007017),Biological Process: protein polymerization (GO:0051258),Cellular Component: microtubule (GO:0005874),Cellular Component: protein complex (GO:0043234),Molecular Function: GTP binding (GO:0005525);InterPro=Tubulin (IPR000217),Tubulin/FtsZ%2C GTPase domain (IPR003008);TENOR=Os06t0169600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	3490289	3490546	.	+	0	Parent=Os06t0169600-00
Chr06	irgsp1_rep	three_prime_UTR	3490547	3490577	.	+	.	Parent=Os06t0169600-00
Chr06	irgsp1_rep	three_prime_UTR	3490723	3490874	.	+	.	Parent=Os06t0169600-00
Chr06	irgsp1_rep	mRNA	3504741	3505001	.	-	.	ID=Os06t0169800-00;Name=Os06t0169800-00;Locus_id=Os06g0169800;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os06t0169800-00
Chr06	irgsp1_rep	CDS	3504741	3505001	.	-	0	Parent=Os06t0169800-00
Chr06	irgsp1_rep	mRNA	3507359	3509141	.	+	.	ID=Os06t0169900-00;Name=Os06t0169900-00;Locus_id=Os06g0169900;Note=Similar to GOS9 protein.;Transcript_evidence=CT836301 (DDBJ%2C Best hit);ORF_evidence=P0C5C6 (UniProt);InterPro=Mannose-binding lectin (IPR001229);TENOR=Os06t0169900-00;KEGG=Os06t0169900-00
Chr06	irgsp1_rep	five_prime_UTR	3507359	3507432	.	+	.	Parent=Os06t0169900-00
Chr06	irgsp1_rep	CDS	3507433	3507435	.	+	0	Parent=Os06t0169900-00
Chr06	irgsp1_rep	CDS	3507618	3507818	.	+	0	Parent=Os06t0169900-00
Chr06	irgsp1_rep	CDS	3508525	3508740	.	+	0	Parent=Os06t0169900-00
Chr06	irgsp1_rep	three_prime_UTR	3508741	3509141	.	+	.	Parent=Os06t0169900-00
Chr06	irgsp1_rep	mRNA	3513202	3514396	.	-	.	ID=Os06t0170000-00;Name=Os06t0170000-00;Locus_id=Os06g0170000;Note=Non-protein coding transcript.;Transcript_evidence=EU950103 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0170000-00
Chr06	irgsp1_rep	exon	3513202	3514396	.	-	.	Parent=Os06t0170000-00
Chr06	irgsp1_rep	mRNA	3515130	3518031	.	-	.	ID=Os06t0170100-00;Name=Os06t0170100-00;Locus_id=Os06g0170100;CGSNL Gene Symbol=WAK63;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 63;Oryzabase Gene Symbol Synonym(s)=OsWAK63;Note=Similar to WAK80 - OsWAK receptor-like protein kinase.;Transcript_evidence=EU956621 (DDBJ);ORF_evidence=NP_001147058.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),EGF-like calcium-binding%2C conserved site (IPR018097);Oryzabase=6953;TENOR=Os06t0170100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	3518029	3518031	.	-	.	Parent=Os06t0170100-00
Chr06	irgsp1_rep	CDS	3517558	3518028	.	-	0	Parent=Os06t0170100-00
Chr06	irgsp1_rep	CDS	3516930	3517407	.	-	0	Parent=Os06t0170100-00
Chr06	irgsp1_rep	CDS	3516401	3516517	.	-	2	Parent=Os06t0170100-00
Chr06	irgsp1_rep	CDS	3515130	3516316	.	-	2	Parent=Os06t0170100-00
Chr06	irgsp1_rep	mRNA	3519052	3520463	.	-	.	ID=Os06t0170200-00;Name=Os06t0170200-00;Locus_id=Os06g0170200;Note=Conserved hypothetical protein.;Transcript_evidence=EU956004 (DDBJ);ORF_evidence=Q2QST1 (UniProt);TENOR=Os06t0170200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	3520410	3520463	.	-	.	Parent=Os06t0170200-00
Chr06	irgsp1_rep	CDS	3520215	3520409	.	-	0	Parent=Os06t0170200-00
Chr06	irgsp1_rep	CDS	3519304	3519360	.	-	0	Parent=Os06t0170200-00
Chr06	irgsp1_rep	three_prime_UTR	3519052	3519303	.	-	.	Parent=Os06t0170200-00
Chr06	irgsp1_rep	mRNA	3536683	3540219	.	-	.	ID=Os06t0170500-01;Name=Os06t0170500-01;Locus_id=Os06g0170500;CGSNL Gene Symbol=C3H40;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 40;Oryzabase Gene Symbol Synonym(s)=OsC3H40;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 40;Note=Similar to RNA-binding protein-like.;Transcript_evidence=AK120360 (DDBJ%2C Best hit);ORF_evidence=B6U0G4 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA recognition motif domain (IPR000504),Zinc finger%2C CCCH-type (IPR000571),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013067M02;Oryzabase=8606;Expression=AK120360;TENOR=Os06t0170500-01;KEGG=Os06t0170500-01
Chr06	irgsp1_rep	five_prime_UTR	3540155	3540219	.	-	.	Parent=Os06t0170500-01
Chr06	irgsp1_rep	CDS	3540050	3540154	.	-	0	Parent=Os06t0170500-01
Chr06	irgsp1_rep	CDS	3539242	3539511	.	-	0	Parent=Os06t0170500-01
Chr06	irgsp1_rep	CDS	3538611	3538834	.	-	0	Parent=Os06t0170500-01
Chr06	irgsp1_rep	CDS	3537215	3538064	.	-	1	Parent=Os06t0170500-01
Chr06	irgsp1_rep	three_prime_UTR	3536683	3537214	.	-	.	Parent=Os06t0170500-01
Chr06	irgsp1_rep	mRNA	3536801	3539390	.	-	.	ID=Os06t0170500-02;Name=Os06t0170500-02;Locus_id=Os06g0170500;CGSNL Gene Symbol=C3H40;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 40;Oryzabase Gene Symbol Synonym(s)=OsC3H40;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 40;Note=Similar to cDNA clone:J013067M02%2C full insert sequence.;Transcript_evidence=AK111997 (DDBJ%2C Best hit);ORF_evidence=B7F5T3 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA recognition motif domain (IPR000504),Zinc finger%2C CCCH-type (IPR000571),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-034-D10;Oryzabase=8606;Expression=AK111997;TENOR=Os06t0170500-02;KEGG=Os06t0170500-02
Chr06	irgsp1_rep	five_prime_UTR	3539389	3539390	.	-	.	Parent=Os06t0170500-02
Chr06	irgsp1_rep	CDS	3539242	3539388	.	-	0	Parent=Os06t0170500-02
Chr06	irgsp1_rep	CDS	3538611	3538834	.	-	0	Parent=Os06t0170500-02
Chr06	irgsp1_rep	CDS	3537215	3538064	.	-	1	Parent=Os06t0170500-02
Chr06	irgsp1_rep	three_prime_UTR	3536801	3537214	.	-	.	Parent=Os06t0170500-02
Chr06	irgsp1_rep	mRNA	3558158	3559922	.	+	.	ID=Os06t0170800-01;Name=Os06t0170800-01;Locus_id=Os06g0170800;Note=Similar to H0124B04.16 protein.;Transcript_evidence=AK109875 (DDBJ%2C Best hit);ORF_evidence=Q259G0 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase aspartic%2C active site (IPR001969),Retroviral aspartyl protease (IPR013242),Peptidase aspartic (IPR021109);NIAS_FLcDNA=002-149-B12;Oryzabase=17589;TENOR=Os06t0170800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	3558158	3558159	.	+	.	Parent=Os06t0170800-01
Chr06	irgsp1_rep	CDS	3558160	3559155	.	+	0	Parent=Os06t0170800-01
Chr06	irgsp1_rep	three_prime_UTR	3559156	3559922	.	+	.	Parent=Os06t0170800-01
Chr06	irgsp1_rep	mRNA	3559947	3561401	.	+	.	ID=Os06t0170866-00;Name=Os06t0170866-00;Locus_id=Os06g0170866;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001174625.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated domain%2C type 3 (IPR013187),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);TENOR=Os06t0170866-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	3559947	3561401	.	+	0	Parent=Os06t0170866-00
Chr06	irgsp1_rep	mRNA	3585217	3588270	.	+	.	ID=Os06t0171500-01;Name=Os06t0171500-01;Locus_id=Os06g0171500;Note=Conserved hypothetical protein.;Transcript_evidence=AK073301 (DDBJ%2C Best hit);ORF_evidence=A2Y9U5 (UniProt);NIAS_FLcDNA=J033027A20;Expression=AK073301;TENOR=Os06t0171500-01;KEGG=Os06t0171500-01
Chr06	irgsp1_rep	five_prime_UTR	3585217	3585750	.	+	.	Parent=Os06t0171500-01
Chr06	irgsp1_rep	CDS	3585751	3586507	.	+	0	Parent=Os06t0171500-01
Chr06	irgsp1_rep	CDS	3587950	3587954	.	+	2	Parent=Os06t0171500-01
Chr06	irgsp1_rep	three_prime_UTR	3587955	3588270	.	+	.	Parent=Os06t0171500-01
Chr06	irgsp1_rep	mRNA	3588217	3595865	.	-	.	ID=Os06t0171600-01;Name=Os06t0171600-01;Locus_id=Os06g0171600;Note=Membrane insertion protein%2C OxaA/YidC domain containing protein.;Transcript_evidence=AK105530 (DDBJ%2C Best hit);ORF_evidence=B9FRR4 (UniProt);GO=Biological Process: protein insertion into membrane (GO:0051205),Cellular Component: integral to membrane (GO:0016021);InterPro=Membrane insertion protein%2C OxaA/YidC (IPR001708);NIAS_FLcDNA=001-127-G09;TENOR=Os06t0171600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	3595854	3595865	.	-	.	Parent=Os06t0171600-01
Chr06	irgsp1_rep	CDS	3595384	3595853	.	-	0	Parent=Os06t0171600-01
Chr06	irgsp1_rep	CDS	3594783	3594889	.	-	1	Parent=Os06t0171600-01
Chr06	irgsp1_rep	CDS	3594270	3594271	.	-	2	Parent=Os06t0171600-01
Chr06	irgsp1_rep	three_prime_UTR	3594174	3594269	.	-	.	Parent=Os06t0171600-01
Chr06	irgsp1_rep	three_prime_UTR	3593967	3594049	.	-	.	Parent=Os06t0171600-01
Chr06	irgsp1_rep	three_prime_UTR	3593069	3593170	.	-	.	Parent=Os06t0171600-01
Chr06	irgsp1_rep	three_prime_UTR	3592420	3592479	.	-	.	Parent=Os06t0171600-01
Chr06	irgsp1_rep	three_prime_UTR	3591361	3591426	.	-	.	Parent=Os06t0171600-01
Chr06	irgsp1_rep	three_prime_UTR	3590451	3590498	.	-	.	Parent=Os06t0171600-01
Chr06	irgsp1_rep	three_prime_UTR	3589945	3590043	.	-	.	Parent=Os06t0171600-01
Chr06	irgsp1_rep	three_prime_UTR	3589655	3589774	.	-	.	Parent=Os06t0171600-01
Chr06	irgsp1_rep	three_prime_UTR	3589507	3589562	.	-	.	Parent=Os06t0171600-01
Chr06	irgsp1_rep	three_prime_UTR	3589301	3589418	.	-	.	Parent=Os06t0171600-01
Chr06	irgsp1_rep	three_prime_UTR	3589130	3589195	.	-	.	Parent=Os06t0171600-01
Chr06	irgsp1_rep	three_prime_UTR	3588930	3589039	.	-	.	Parent=Os06t0171600-01
Chr06	irgsp1_rep	three_prime_UTR	3588217	3588536	.	-	.	Parent=Os06t0171600-01
Chr06	irgsp1_rep	mRNA	3596001	3598291	.	+	.	ID=Os06t0171700-01;Name=Os06t0171700-01;Locus_id=Os06g0171700;Oryzabase Gene Symbol Synonym(s)=CAK1%2C MAT1%2C OsCAK1%2C OsMAT1%2C CDKA1%2C OsCDKA1;Oryzabase Gene Name Synonym(s)=G1/S-phase gene CAK1%2C CDK-activating kinase assembly factor%2C MENAGE A TROIS 1%2C MAT1 assembly factor;Note=Cdk-activating kinase assembly factor (MAT1) family protein.;Transcript_evidence=AK103771 (DDBJ%2C Best hit);ORF_evidence=NP_001150873.1 (RefSeq);GO=Biological Process: cell cycle (GO:0007049),Cellular Component: nucleus (GO:0005634);InterPro=Cdk-activating kinase assembly factor (MAT1) (IPR004575),Cdk-activating kinase assembly factor MAT1%2C centre (IPR015877);NIAS_FLcDNA=J033143J20;Oryzabase=19087;Expression=AK103771;TENOR=Os06t0171700-01;KEGG=Os06t0171700-01
Chr06	irgsp1_rep	five_prime_UTR	3596001	3596157	.	+	.	Parent=Os06t0171700-01
Chr06	irgsp1_rep	CDS	3596158	3596231	.	+	0	Parent=Os06t0171700-01
Chr06	irgsp1_rep	CDS	3596333	3596406	.	+	1	Parent=Os06t0171700-01
Chr06	irgsp1_rep	CDS	3596508	3596611	.	+	2	Parent=Os06t0171700-01
Chr06	irgsp1_rep	CDS	3596699	3596767	.	+	0	Parent=Os06t0171700-01
Chr06	irgsp1_rep	CDS	3597650	3597916	.	+	0	Parent=Os06t0171700-01
Chr06	irgsp1_rep	three_prime_UTR	3597917	3598291	.	+	.	Parent=Os06t0171700-01
Chr06	irgsp1_rep	mRNA	3598466	3605188	.	-	.	ID=Os06t0171800-01;Name=Os06t0171800-01;Locus_id=Os06g0171800;Note=VRR-NUC domain containing protein.;Transcript_evidence=AK120233 (DDBJ%2C Best hit);ORF_evidence=NP_001117447.1 (RefSeq);GO=Biological Process: DNA repair (GO:0006281),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides (GO:0016818);InterPro=Zinc finger%2C Rad18-type putative (IPR006642),VRR-NUC (IPR014883),HIP116%2C Rad5p N-terminal (IPR014905);NIAS_FLcDNA=J013043I15;Expression=AK120233;TENOR=Os06t0171800-01;KEGG=Os06t0171800-01
Chr06	irgsp1_rep	five_prime_UTR	3605099	3605188	.	-	.	Parent=Os06t0171800-01
Chr06	irgsp1_rep	CDS	3604994	3605098	.	-	0	Parent=Os06t0171800-01
Chr06	irgsp1_rep	CDS	3604744	3604891	.	-	0	Parent=Os06t0171800-01
Chr06	irgsp1_rep	CDS	3603768	3604303	.	-	2	Parent=Os06t0171800-01
Chr06	irgsp1_rep	CDS	3603588	3603692	.	-	0	Parent=Os06t0171800-01
Chr06	irgsp1_rep	CDS	3602751	3603012	.	-	0	Parent=Os06t0171800-01
Chr06	irgsp1_rep	CDS	3602600	3602662	.	-	2	Parent=Os06t0171800-01
Chr06	irgsp1_rep	CDS	3602099	3602173	.	-	2	Parent=Os06t0171800-01
Chr06	irgsp1_rep	CDS	3601906	3602024	.	-	2	Parent=Os06t0171800-01
Chr06	irgsp1_rep	CDS	3600927	3600997	.	-	0	Parent=Os06t0171800-01
Chr06	irgsp1_rep	CDS	3600767	3600854	.	-	1	Parent=Os06t0171800-01
Chr06	irgsp1_rep	CDS	3600502	3600642	.	-	0	Parent=Os06t0171800-01
Chr06	irgsp1_rep	CDS	3600192	3600415	.	-	0	Parent=Os06t0171800-01
Chr06	irgsp1_rep	CDS	3599728	3600001	.	-	1	Parent=Os06t0171800-01
Chr06	irgsp1_rep	CDS	3599370	3599603	.	-	0	Parent=Os06t0171800-01
Chr06	irgsp1_rep	CDS	3598628	3599077	.	-	0	Parent=Os06t0171800-01
Chr06	irgsp1_rep	three_prime_UTR	3598466	3598627	.	-	.	Parent=Os06t0171800-01
Chr06	irgsp1_rep	mRNA	3632670	3639453	.	+	.	ID=Os06t0171900-01;Name=Os06t0171900-01;Locus_id=Os06g0171900;RAP-DB Gene Symbol Synonym(s)=SRWD3%2C SRWD3%2C OsWD40-126;RAP-DB Gene Name Synonym(s)=SALT RESPONSIVE WD40 PROTEIN 3%2C salt responsive WD40 protein 3;CGSNL Gene Symbol=SRWD3;CGSNL Gene Name=SALT RESPONSIVE WD40 PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=SRWD3%2C OsWD40-126;Oryzabase Gene Name Synonym(s)=salt responsive WD40 protein 3;Note=WD40 subfamily protein%2C Salt stress;Transcript_evidence=AK100886 (Genbank);ORF_evidence=Q5SND4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J023128H22;Manual Curation=June 9%2C 2009;Literature_PMID=18755256;Oryzabase=8212;Expression=AK100886;TENOR=Os06t0171900-01;KEGG=Os06t0171900-01
Chr06	irgsp1_rep	five_prime_UTR	3632670	3632998	.	+	.	Parent=Os06t0171900-01
Chr06	irgsp1_rep	five_prime_UTR	3633100	3633115	.	+	.	Parent=Os06t0171900-01
Chr06	irgsp1_rep	CDS	3633116	3633289	.	+	0	Parent=Os06t0171900-01
Chr06	irgsp1_rep	CDS	3634540	3634707	.	+	0	Parent=Os06t0171900-01
Chr06	irgsp1_rep	CDS	3634805	3634891	.	+	0	Parent=Os06t0171900-01
Chr06	irgsp1_rep	CDS	3635505	3635639	.	+	0	Parent=Os06t0171900-01
Chr06	irgsp1_rep	CDS	3635774	3635884	.	+	0	Parent=Os06t0171900-01
Chr06	irgsp1_rep	CDS	3636122	3636213	.	+	0	Parent=Os06t0171900-01
Chr06	irgsp1_rep	CDS	3636296	3636401	.	+	1	Parent=Os06t0171900-01
Chr06	irgsp1_rep	CDS	3636483	3636569	.	+	0	Parent=Os06t0171900-01
Chr06	irgsp1_rep	CDS	3638804	3639217	.	+	0	Parent=Os06t0171900-01
Chr06	irgsp1_rep	three_prime_UTR	3639218	3639453	.	+	.	Parent=Os06t0171900-01
Chr06	irgsp1_rep	mRNA	3635515	3639434	.	+	.	ID=Os06t0171900-02;Name=Os06t0171900-02;Locus_id=Os06g0171900;CGSNL Gene Symbol=SRWD3;CGSNL Gene Name=SALT RESPONSIVE WD40 PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=SRWD3%2C OsWD40-126;Oryzabase Gene Name Synonym(s)=salt responsive WD40 protein 3;Note=Similar to GAMYB-binding protein (Fragment).;Transcript_evidence=AK105084 (DDBJ%2C Best hit);ORF_evidence=Q84UD1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=001-046-H01;Oryzabase=8212;Expression=AK105084;TENOR=Os06t0171900-02;KEGG=Os06t0171900-02
Chr06	irgsp1_rep	five_prime_UTR	3635515	3635516	.	+	.	Parent=Os06t0171900-02
Chr06	irgsp1_rep	CDS	3635517	3635639	.	+	0	Parent=Os06t0171900-02
Chr06	irgsp1_rep	CDS	3635774	3635884	.	+	0	Parent=Os06t0171900-02
Chr06	irgsp1_rep	CDS	3636122	3636213	.	+	0	Parent=Os06t0171900-02
Chr06	irgsp1_rep	CDS	3636296	3636401	.	+	1	Parent=Os06t0171900-02
Chr06	irgsp1_rep	CDS	3636483	3636569	.	+	0	Parent=Os06t0171900-02
Chr06	irgsp1_rep	CDS	3638804	3639217	.	+	0	Parent=Os06t0171900-02
Chr06	irgsp1_rep	three_prime_UTR	3639218	3639434	.	+	.	Parent=Os06t0171900-02
Chr06	irgsp1_rep	mRNA	3640786	3643222	.	+	.	ID=Os06t0172000-01;Name=Os06t0172000-01;Locus_id=Os06g0172000;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK068738 (DDBJ%2C Best hit);ORF_evidence=B8B3E9 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Helix-loop-helix DNA-binding (IPR011598),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013158I18;Expression=AK068738;TENOR=Os06t0172000-01;KEGG=Os06t0172000-01
Chr06	irgsp1_rep	five_prime_UTR	3640786	3640874	.	+	.	Parent=Os06t0172000-01
Chr06	irgsp1_rep	CDS	3640875	3641309	.	+	0	Parent=Os06t0172000-01
Chr06	irgsp1_rep	CDS	3641394	3641800	.	+	0	Parent=Os06t0172000-01
Chr06	irgsp1_rep	CDS	3642032	3642725	.	+	1	Parent=Os06t0172000-01
Chr06	irgsp1_rep	three_prime_UTR	3642726	3643222	.	+	.	Parent=Os06t0172000-01
Chr06	irgsp1_rep	mRNA	3649379	3650265	.	-	.	ID=Os06t0172101-00;Name=Os06t0172101-00;Locus_id=Os06g0172101;Note=Hypothetical gene.;Transcript_evidence=EU951657 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0172101-00;KEGG=Os06t0172101-00
Chr06	irgsp1_rep	five_prime_UTR	3650243	3650265	.	-	.	Parent=Os06t0172101-00
Chr06	irgsp1_rep	CDS	3649982	3650242	.	-	0	Parent=Os06t0172101-00
Chr06	irgsp1_rep	CDS	3649379	3649531	.	-	0	Parent=Os06t0172101-00
Chr06	irgsp1_rep	mRNA	3649517	3650686	.	+	.	ID=Os06t0172200-02;Name=Os06t0172200-02;Locus_id=Os06g0172200;CGSNL Gene Symbol=CML30;CGSNL Gene Name=CALMODULIN-LIKE PROTEIN 30;Oryzabase Gene Symbol Synonym(s)=OsCML30;Oryzabase Gene Name Synonym(s)=calmodulin-like protein 30;Note=EF-Hand type domain containing protein.;Transcript_evidence=AK105920 (DDBJ%2C Best hit),AK070725 (DDBJ%2C Best hit);ORF_evidence=Q5SND2 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=001-205-A03,J023057D02;Oryzabase=10514;Expression=AK105920;TENOR=Os06t0172200-02;KEGG=Os06t0172200-02
Chr06	irgsp1_rep	five_prime_UTR	3649517	3649553	.	+	.	Parent=Os06t0172200-02
Chr06	irgsp1_rep	CDS	3649554	3650264	.	+	0	Parent=Os06t0172200-02
Chr06	irgsp1_rep	three_prime_UTR	3650265	3650686	.	+	.	Parent=Os06t0172200-02
Chr06	irgsp1_rep	mRNA	3656494	3657055	.	+	.	ID=Os06t0172600-00;Name=Os06t0172600-00;Locus_id=Os06g0172600;Note=Similar to predicted protein.;Transcript_evidence=CU405936 (DDBJ%2C Best hit);ORF_evidence=B6SLI1 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S30 (IPR006846);TENOR=Os06t0172600-00;KEGG=Os06t0172600-00
Chr06	irgsp1_rep	five_prime_UTR	3656494	3656577	.	+	.	Parent=Os06t0172600-00
Chr06	irgsp1_rep	CDS	3656578	3656581	.	+	0	Parent=Os06t0172600-00
Chr06	irgsp1_rep	CDS	3656656	3656840	.	+	2	Parent=Os06t0172600-00
Chr06	irgsp1_rep	three_prime_UTR	3656841	3657055	.	+	.	Parent=Os06t0172600-00
Chr06	irgsp1_rep	mRNA	3660715	3661175	.	+	.	ID=Os06t0172675-00;Name=Os06t0172675-00;Locus_id=Os06g0172675;Note=Hypothetical protein.;Transcript_evidence=BT086967 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0172675-00
Chr06	irgsp1_rep	five_prime_UTR	3660715	3660715	.	+	.	Parent=Os06t0172675-00
Chr06	irgsp1_rep	CDS	3660716	3661175	.	+	0	Parent=Os06t0172675-00
Chr06	irgsp1_rep	mRNA	3663062	3664355	.	+	.	ID=Os06t0172750-01;Name=Os06t0172750-01;Locus_id=Os06g0172750;Note=Non-protein coding transcript.;Transcript_evidence=AK242296 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J075191P09;TENOR=Os06t0172750-01
Chr06	irgsp1_rep	exon	3663062	3664355	.	+	.	Parent=Os06t0172750-01
Chr06	irgsp1_rep	mRNA	3675795	3679085	.	-	.	ID=Os06t0172800-00;Name=Os06t0172800-00;Locus_id=Os06g0172800;Oryzabase Gene Name Synonym(s)=alkaline alpha-galactosidase;Note=Similar to alkaline alpha galactosidase 2.;Transcript_evidence=BT061992 (DDBJ);ORF_evidence=NP_001105794.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Raffinose synthase (IPR008811),Aldolase-type TIM barrel (IPR013785),Glycoside hydrolase%2C superfamily (IPR017853);Oryzabase=15262;TENOR=Os06t0172800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	3678405	3679085	.	-	0	Parent=Os06t0172800-00
Chr06	irgsp1_rep	CDS	3677201	3678288	.	-	0	Parent=Os06t0172800-00
Chr06	irgsp1_rep	CDS	3676899	3677108	.	-	1	Parent=Os06t0172800-00
Chr06	irgsp1_rep	CDS	3676680	3676814	.	-	1	Parent=Os06t0172800-00
Chr06	irgsp1_rep	CDS	3676265	3676574	.	-	1	Parent=Os06t0172800-00
Chr06	irgsp1_rep	CDS	3675795	3676148	.	-	0	Parent=Os06t0172800-00
Chr06	irgsp1_rep	mRNA	3676277	3678331	.	+	.	ID=Os06t0172901-00;Name=Os06t0172901-00;Locus_id=Os06g0172901;Note=Hypothetical protein.;Transcript_evidence=tplb0060c15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0172901-00
Chr06	irgsp1_rep	five_prime_UTR	3676277	3676553	.	+	.	Parent=Os06t0172901-00
Chr06	irgsp1_rep	CDS	3676554	3676574	.	+	0	Parent=Os06t0172901-00
Chr06	irgsp1_rep	CDS	3676680	3676795	.	+	0	Parent=Os06t0172901-00
Chr06	irgsp1_rep	CDS	3676882	3677096	.	+	1	Parent=Os06t0172901-00
Chr06	irgsp1_rep	CDS	3677183	3678331	.	+	2	Parent=Os06t0172901-00
Chr06	irgsp1_rep	mRNA	3682377	3688555	.	+	.	ID=Os06t0173000-00;Name=Os06t0173000-00;Locus_id=Os06g0173000;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3B8V4 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-type fold (IPR016024),Rap1-interacting factor 1 N-terminal (IPR022031);TENOR=Os06t0173000-00;KEGG=Os06t0173000-00
Chr06	irgsp1_rep	CDS	3682377	3682653	.	+	0	Parent=Os06t0173000-00
Chr06	irgsp1_rep	CDS	3683833	3683894	.	+	2	Parent=Os06t0173000-00
Chr06	irgsp1_rep	CDS	3684024	3684173	.	+	0	Parent=Os06t0173000-00
Chr06	irgsp1_rep	CDS	3684784	3684960	.	+	0	Parent=Os06t0173000-00
Chr06	irgsp1_rep	CDS	3685504	3685719	.	+	0	Parent=Os06t0173000-00
Chr06	irgsp1_rep	CDS	3685810	3687488	.	+	0	Parent=Os06t0173000-00
Chr06	irgsp1_rep	CDS	3687610	3687675	.	+	1	Parent=Os06t0173000-00
Chr06	irgsp1_rep	CDS	3687761	3687830	.	+	1	Parent=Os06t0173000-00
Chr06	irgsp1_rep	CDS	3687917	3688555	.	+	0	Parent=Os06t0173000-00
Chr06	irgsp1_rep	mRNA	3689676	3694342	.	+	.	ID=Os06t0173100-01;Name=Os06t0173100-01;Locus_id=Os06g0173100;CGSNL Gene Symbol=RPT5B;CGSNL Gene Name=19S REGULATORY PARTICLE ATPASE SUBUNIT 5B;Oryzabase Gene Symbol Synonym(s)=OsRpt5b%2C Rpt5b;Oryzabase Gene Name Synonym(s)=19S regulatory particle ATPase subunit 5b%2C RP triple A-ATPase 5b;Note=Similar to 26S protease regulatory subunit 6A homolog (TAT-binding protein homolog 1) (TBP-1) (Mg(2+)-dependent ATPase 1) (LEMA-1).;Transcript_evidence=AK065612 (DDBJ%2C Best hit);ORF_evidence=P46465 (UniProt);GO=Biological Process: protein catabolic process (GO:0030163),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960),26S proteasome subunit P45 (IPR005937);NIAS_FLcDNA=J013026E01;Oryzabase=16767;Expression=AK065612;TENOR=Os06t0173100-01;KEGG=Os06t0173100-01
Chr06	irgsp1_rep	five_prime_UTR	3689676	3689762	.	+	.	Parent=Os06t0173100-01
Chr06	irgsp1_rep	CDS	3689763	3689895	.	+	0	Parent=Os06t0173100-01
Chr06	irgsp1_rep	CDS	3690056	3690174	.	+	2	Parent=Os06t0173100-01
Chr06	irgsp1_rep	CDS	3690967	3691074	.	+	0	Parent=Os06t0173100-01
Chr06	irgsp1_rep	CDS	3691642	3691833	.	+	0	Parent=Os06t0173100-01
Chr06	irgsp1_rep	CDS	3692018	3692209	.	+	0	Parent=Os06t0173100-01
Chr06	irgsp1_rep	CDS	3692492	3692610	.	+	0	Parent=Os06t0173100-01
Chr06	irgsp1_rep	CDS	3692748	3692835	.	+	1	Parent=Os06t0173100-01
Chr06	irgsp1_rep	CDS	3693163	3693282	.	+	0	Parent=Os06t0173100-01
Chr06	irgsp1_rep	CDS	3693386	3693526	.	+	0	Parent=Os06t0173100-01
Chr06	irgsp1_rep	CDS	3694073	3694150	.	+	0	Parent=Os06t0173100-01
Chr06	irgsp1_rep	three_prime_UTR	3694151	3694342	.	+	.	Parent=Os06t0173100-01
Chr06	irgsp1_rep	mRNA	3692016	3693281	.	-	.	ID=Os06t0173450-00;Name=Os06t0173450-00;Locus_id=Os06g0173450;Note=Hypothetical protein.;Transcript_evidence=BT085228 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0173450-00
Chr06	irgsp1_rep	five_prime_UTR	3693250	3693281	.	-	.	Parent=Os06t0173450-00
Chr06	irgsp1_rep	CDS	3693190	3693249	.	-	0	Parent=Os06t0173450-00
Chr06	irgsp1_rep	CDS	3692764	3692859	.	-	0	Parent=Os06t0173450-00
Chr06	irgsp1_rep	CDS	3692468	3692620	.	-	0	Parent=Os06t0173450-00
Chr06	irgsp1_rep	three_prime_UTR	3692463	3692467	.	-	.	Parent=Os06t0173450-00
Chr06	irgsp1_rep	three_prime_UTR	3692016	3692179	.	-	.	Parent=Os06t0173450-00
Chr06	irgsp1_rep	mRNA	3723342	3725225	.	-	.	ID=Os06t0173800-00;Name=Os06t0173800-00;Locus_id=Os06g0173800;Note=SANT domain%2C DNA binding domain containing protein.;Transcript_evidence=EU951889 (DDBJ);ORF_evidence=Q5SNB3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),SANT%2C eukarya (IPR017884);TENOR=Os06t0173800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	3724720	3725225	.	-	0	Parent=Os06t0173800-00
Chr06	irgsp1_rep	CDS	3723342	3723819	.	-	1	Parent=Os06t0173800-00
Chr06	irgsp1_rep	mRNA	3759843	3762120	.	+	.	ID=Os06t0174300-01;Name=Os06t0174300-01;Locus_id=Os06g0174300;Oryzabase Gene Symbol Synonym(s)=OsSrx;Oryzabase Gene Name Synonym(s)=sulfiredoxin;Note=Similar to predicted protein.;Transcript_evidence=AK242396 (DDBJ%2C Best hit);ORF_evidence=Q2MGR0 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: DNA binding (GO:0003677),Molecular Function: sulfiredoxin activity (GO:0032542);InterPro=ParB-like nuclease (IPR003115),Sulfiredoxin (IPR016692);NIAS_FLcDNA=J080066H20;Oryzabase=14178;TENOR=Os06t0174300-01;KEGG=Os06t0174300-01
Chr06	irgsp1_rep	five_prime_UTR	3759843	3759890	.	+	.	Parent=Os06t0174300-01
Chr06	irgsp1_rep	CDS	3759891	3760044	.	+	0	Parent=Os06t0174300-01
Chr06	irgsp1_rep	CDS	3760681	3760847	.	+	2	Parent=Os06t0174300-01
Chr06	irgsp1_rep	CDS	3761641	3761674	.	+	0	Parent=Os06t0174300-01
Chr06	irgsp1_rep	CDS	3761775	3761868	.	+	2	Parent=Os06t0174300-01
Chr06	irgsp1_rep	CDS	3761952	3761967	.	+	1	Parent=Os06t0174300-01
Chr06	irgsp1_rep	three_prime_UTR	3761968	3762120	.	+	.	Parent=Os06t0174300-01
Chr06	irgsp1_rep	mRNA	3762943	3765919	.	+	.	ID=Os06t0174350-01;Name=Os06t0174350-01;Locus_id=Os06g0174350;Note=Hypothetical conserved gene.;Transcript_evidence=AK240737 (DDBJ%2C Best hit);ORF_evidence=Q658G1 (UniProt);NIAS_FLcDNA=J043034B05;TENOR=Os06t0174350-01;KEGG=Os06t0174350-01
Chr06	irgsp1_rep	five_prime_UTR	3762943	3762943	.	+	.	Parent=Os06t0174350-01
Chr06	irgsp1_rep	CDS	3762944	3763351	.	+	0	Parent=Os06t0174350-01
Chr06	irgsp1_rep	three_prime_UTR	3763352	3764920	.	+	.	Parent=Os06t0174350-01
Chr06	irgsp1_rep	three_prime_UTR	3765021	3765919	.	+	.	Parent=Os06t0174350-01
Chr06	irgsp1_rep	mRNA	3771458	3773095	.	+	.	ID=Os06t0174375-01;Name=Os06t0174375-01;Locus_id=Os06g0174375;Note=Conserved hypothetical protein.;Transcript_evidence=AK242835 (DDBJ%2C Best hit);ORF_evidence=NP_001174628.1 (RefSeq);NIAS_FLcDNA=J090069C12;TENOR=Os06t0174375-01;KEGG=Os06t0174375-01
Chr06	irgsp1_rep	five_prime_UTR	3771458	3771458	.	+	.	Parent=Os06t0174375-01
Chr06	irgsp1_rep	CDS	3771459	3772826	.	+	0	Parent=Os06t0174375-01
Chr06	irgsp1_rep	three_prime_UTR	3772827	3773095	.	+	.	Parent=Os06t0174375-01
Chr06	irgsp1_rep	mRNA	3773690	3776480	.	-	.	ID=Os06t0174400-01;Name=Os06t0174400-01;Locus_id=Os06g0174400;CGSNL Gene Symbol=VAMP7111;CGSNL Gene Name=VESICLE-ASSOCIATED MEMBRANE PROTEIN 7111;Oryzabase Gene Symbol Synonym(s)=OsVAMP7111;Oryzabase Gene Name Synonym(s)=vesicle-associated membrane protein 7111;Note=Similar to Vesicle-associated membrane protein 712 (AtVAMP712).;Transcript_evidence=AK065311 (DDBJ%2C Best hit);ORF_evidence=B6U726 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: integral to membrane (GO:0016021);InterPro=Synaptobrevin (IPR001388),Longin (IPR010908),Longin-like (IPR011012);NIAS_FLcDNA=J013002O15;Oryzabase=21042;Expression=AK065311;TENOR=Os06t0174400-01;KEGG=Os06t0174400-01
Chr06	irgsp1_rep	five_prime_UTR	3776343	3776480	.	-	.	Parent=Os06t0174400-01
Chr06	irgsp1_rep	CDS	3776123	3776342	.	-	0	Parent=Os06t0174400-01
Chr06	irgsp1_rep	CDS	3775303	3775493	.	-	2	Parent=Os06t0174400-01
Chr06	irgsp1_rep	CDS	3774776	3774939	.	-	0	Parent=Os06t0174400-01
Chr06	irgsp1_rep	CDS	3773941	3774031	.	-	1	Parent=Os06t0174400-01
Chr06	irgsp1_rep	three_prime_UTR	3773690	3773940	.	-	.	Parent=Os06t0174400-01
Chr06	irgsp1_rep	mRNA	3781125	3782786	.	-	.	ID=Os06t0174700-01;Name=Os06t0174700-01;Locus_id=Os06g0174700;Note=Hypothetical protein.;Transcript_evidence=AK099635 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013059J21;Expression=AK099635;TENOR=Os06t0174700-01;KEGG=Os06t0174700-01
Chr06	irgsp1_rep	five_prime_UTR	3782356	3782786	.	-	.	Parent=Os06t0174700-01
Chr06	irgsp1_rep	CDS	3781132	3782355	.	-	0	Parent=Os06t0174700-01
Chr06	irgsp1_rep	three_prime_UTR	3781125	3781131	.	-	.	Parent=Os06t0174700-01
Chr06	irgsp1_rep	mRNA	3781226	3782897	.	+	.	ID=Os06t0174800-00;Name=Os06t0174800-00;Locus_id=Os06g0174800;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0014k20 (Wheat FLcDNA);ORF_evidence=A2Y9X0 (UniProt);TENOR=Os06t0174800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	3781226	3781996	.	+	0	Parent=Os06t0174800-00
Chr06	irgsp1_rep	CDS	3782111	3782437	.	+	0	Parent=Os06t0174800-00
Chr06	irgsp1_rep	CDS	3782529	3782897	.	+	0	Parent=Os06t0174800-00
Chr06	irgsp1_rep	mRNA	3787789	3789434	.	+	.	ID=Os06t0174900-00;Name=Os06t0174900-00;Locus_id=Os06g0174900;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0014k20 (Wheat FLcDNA);ORF_evidence=Q658F8 (UniProt);TENOR=Os06t0174900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	3787789	3788679	.	+	0	Parent=Os06t0174900-00
Chr06	irgsp1_rep	CDS	3788785	3789012	.	+	0	Parent=Os06t0174900-00
Chr06	irgsp1_rep	CDS	3789102	3789434	.	+	0	Parent=Os06t0174900-00
Chr06	irgsp1_rep	mRNA	3795874	3798810	.	-	.	ID=Os06t0175400-00;Name=Os06t0175400-00;Locus_id=Os06g0175400;Note=Hypothetical conserved gene.;Transcript_evidence=tplb0015n10 (Wheat FLcDNA);ORF_evidence=B4FNU7 (UniProt);InterPro=BSD (IPR005607);TENOR=Os06t0175400-00;KEGG=Os06t0175400-00
Chr06	irgsp1_rep	CDS	3798345	3798810	.	-	0	Parent=Os06t0175400-00
Chr06	irgsp1_rep	CDS	3798137	3798289	.	-	2	Parent=Os06t0175400-00
Chr06	irgsp1_rep	CDS	3797208	3797386	.	-	2	Parent=Os06t0175400-00
Chr06	irgsp1_rep	CDS	3796201	3796242	.	-	0	Parent=Os06t0175400-00
Chr06	irgsp1_rep	three_prime_UTR	3795874	3796200	.	-	.	Parent=Os06t0175400-00
Chr06	irgsp1_rep	mRNA	3801272	3807766	.	-	.	ID=Os06t0175500-01;Name=Os06t0175500-01;Locus_id=Os06g0175500;Note=Epsin-like%2C N-terminal domain containing protein.;Transcript_evidence=AK100481 (DDBJ%2C Best hit);ORF_evidence=NP_198370.1 (RefSeq);GO=Biological Process: clathrin coat assembly (GO:0048268),Cellular Component: clathrin coat (GO:0030118),Molecular Function: phospholipid binding (GO:0005543),Molecular Function: 1-phosphatidylinositol binding (GO:0005545),Molecular Function: clathrin binding (GO:0030276);InterPro=ENTH/VHS (IPR008942),ANTH (IPR011417),Epsin-like%2C N-terminal (IPR013809),Clathrin adaptor%2C phosphoinositide-binding%2C GAT-like (IPR014712);NIAS_FLcDNA=J023096B16;Expression=AK100481;TENOR=Os06t0175500-01;KEGG=Os06t0175500-01
Chr06	irgsp1_rep	five_prime_UTR	3807672	3807766	.	-	.	Parent=Os06t0175500-01
Chr06	irgsp1_rep	five_prime_UTR	3806486	3806518	.	-	.	Parent=Os06t0175500-01
Chr06	irgsp1_rep	CDS	3806384	3806485	.	-	0	Parent=Os06t0175500-01
Chr06	irgsp1_rep	CDS	3806202	3806271	.	-	0	Parent=Os06t0175500-01
Chr06	irgsp1_rep	CDS	3805828	3805925	.	-	2	Parent=Os06t0175500-01
Chr06	irgsp1_rep	CDS	3805196	3805337	.	-	0	Parent=Os06t0175500-01
Chr06	irgsp1_rep	CDS	3804996	3805096	.	-	2	Parent=Os06t0175500-01
Chr06	irgsp1_rep	CDS	3804437	3804520	.	-	0	Parent=Os06t0175500-01
Chr06	irgsp1_rep	CDS	3804285	3804335	.	-	0	Parent=Os06t0175500-01
Chr06	irgsp1_rep	CDS	3804125	3804190	.	-	0	Parent=Os06t0175500-01
Chr06	irgsp1_rep	CDS	3803944	3804009	.	-	0	Parent=Os06t0175500-01
Chr06	irgsp1_rep	CDS	3803250	3803330	.	-	0	Parent=Os06t0175500-01
Chr06	irgsp1_rep	CDS	3803096	3803167	.	-	0	Parent=Os06t0175500-01
Chr06	irgsp1_rep	CDS	3802765	3802917	.	-	0	Parent=Os06t0175500-01
Chr06	irgsp1_rep	CDS	3802616	3802691	.	-	0	Parent=Os06t0175500-01
Chr06	irgsp1_rep	CDS	3802403	3802512	.	-	2	Parent=Os06t0175500-01
Chr06	irgsp1_rep	CDS	3801586	3802026	.	-	0	Parent=Os06t0175500-01
Chr06	irgsp1_rep	three_prime_UTR	3801272	3801585	.	-	.	Parent=Os06t0175500-01
Chr06	irgsp1_rep	mRNA	3801240	3804011	.	-	.	ID=Os06t0175500-02;Name=Os06t0175500-02;Locus_id=Os06g0175500;Note=Similar to predicted protein.;Transcript_evidence=AK058599 (DDBJ%2C Best hit);ORF_evidence=NP_198370.1 (RefSeq);GO=Biological Process: clathrin coat assembly (GO:0048268),Cellular Component: clathrin coat (GO:0030118),Molecular Function: phospholipid binding (GO:0005543),Molecular Function: 1-phosphatidylinositol binding (GO:0005545),Molecular Function: clathrin binding (GO:0030276);InterPro=ANTH (IPR011417),Clathrin adaptor%2C phosphoinositide-binding%2C GAT-like (IPR014712);NIAS_FLcDNA=001-017-H06;Expression=AK058599;TENOR=Os06t0175500-02;KEGG=Os06t0175500-02
Chr06	irgsp1_rep	five_prime_UTR	3804010	3804011	.	-	.	Parent=Os06t0175500-02
Chr06	irgsp1_rep	CDS	3803944	3804009	.	-	0	Parent=Os06t0175500-02
Chr06	irgsp1_rep	CDS	3803250	3803330	.	-	0	Parent=Os06t0175500-02
Chr06	irgsp1_rep	CDS	3803096	3803167	.	-	0	Parent=Os06t0175500-02
Chr06	irgsp1_rep	CDS	3802765	3802917	.	-	0	Parent=Os06t0175500-02
Chr06	irgsp1_rep	CDS	3802616	3802691	.	-	0	Parent=Os06t0175500-02
Chr06	irgsp1_rep	CDS	3802403	3802512	.	-	2	Parent=Os06t0175500-02
Chr06	irgsp1_rep	CDS	3801586	3802026	.	-	0	Parent=Os06t0175500-02
Chr06	irgsp1_rep	three_prime_UTR	3801240	3801585	.	-	.	Parent=Os06t0175500-02
Chr06	irgsp1_rep	mRNA	3823021	3827326	.	+	.	ID=Os06t0175800-01;Name=Os06t0175800-01;Locus_id=Os06g0175800;Oryzabase Gene Name Synonym(s)=cystathine gamma-lyase;Note=Similar to Cystathionine beta-lyase%2C chloroplast precursor (EC 4.4.1.8) (CBL) (Beta-cystathionase) (Cysteine lyase).;Transcript_evidence=AK119521 (DDBJ%2C Best hit);ORF_evidence=B4FU01 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: 'de novo' L-methionine biosynthetic process (GO:0071266),Molecular Function: catalytic activity (GO:0003824),Molecular Function: cystathionine beta-lyase activity (GO:0004121),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Cys/Met metabolism%2C pyridoxal phosphate-dependent enzyme (IPR000277),Cystathionine beta-lyase%2C eukaryotic (IPR006238),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=001-202-D09;Oryzabase=16691;Expression=AK119521;TENOR=Os06t0175800-01;KEGG=Os06t0175800-01 (EC:4.4.1.8)
Chr06	irgsp1_rep	five_prime_UTR	3823021	3823058	.	+	.	Parent=Os06t0175800-01
Chr06	irgsp1_rep	CDS	3823059	3823326	.	+	0	Parent=Os06t0175800-01
Chr06	irgsp1_rep	CDS	3823416	3823528	.	+	2	Parent=Os06t0175800-01
Chr06	irgsp1_rep	CDS	3824681	3824751	.	+	0	Parent=Os06t0175800-01
Chr06	irgsp1_rep	CDS	3824839	3824930	.	+	1	Parent=Os06t0175800-01
Chr06	irgsp1_rep	CDS	3825032	3825119	.	+	2	Parent=Os06t0175800-01
Chr06	irgsp1_rep	CDS	3825216	3825327	.	+	1	Parent=Os06t0175800-01
Chr06	irgsp1_rep	CDS	3825455	3825551	.	+	0	Parent=Os06t0175800-01
Chr06	irgsp1_rep	CDS	3825662	3825743	.	+	2	Parent=Os06t0175800-01
Chr06	irgsp1_rep	CDS	3826108	3826225	.	+	1	Parent=Os06t0175800-01
Chr06	irgsp1_rep	CDS	3826411	3826518	.	+	0	Parent=Os06t0175800-01
Chr06	irgsp1_rep	CDS	3826669	3826771	.	+	0	Parent=Os06t0175800-01
Chr06	irgsp1_rep	CDS	3826948	3827123	.	+	2	Parent=Os06t0175800-01
Chr06	irgsp1_rep	three_prime_UTR	3827124	3827326	.	+	.	Parent=Os06t0175800-01
Chr06	irgsp1_rep	mRNA	3828103	3830152	.	+	.	ID=Os06t0175900-01;Name=Os06t0175900-01;Locus_id=Os06g0175900;Note=Similar to CytoChrome b-c1 complex subunit 8.;Transcript_evidence=AK120341 (DDBJ%2C Best hit),AK119716 (DDBJ%2C Best hit),AK243475 (DDBJ%2C Best hit);ORF_evidence=D6BQP2 (UniProt);GO=Molecular Function: ubiquinol-cytoChrome-c reductase activity (GO:0008121);InterPro=UcrQ (IPR004205),CytoChrome b-c1 complex%2C subunit 8 (IPR020101);NIAS_FLcDNA=J013061B12,002-157-F09,J100072F20;TENOR=Os06t0175900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	3828103	3828203	.	+	.	Parent=Os06t0175900-01
Chr06	irgsp1_rep	CDS	3828204	3828373	.	+	0	Parent=Os06t0175900-01
Chr06	irgsp1_rep	CDS	3829863	3829911	.	+	1	Parent=Os06t0175900-01
Chr06	irgsp1_rep	three_prime_UTR	3829912	3830152	.	+	.	Parent=Os06t0175900-01
Chr06	irgsp1_rep	mRNA	3832018	3833094	.	+	.	ID=Os06t0176000-01;Name=Os06t0176000-01;Locus_id=Os06g0176000;Oryzabase Gene Symbol Synonym(s)=OsPAC1;Oryzabase Gene Name Synonym(s)=20S proteasome alpha3 subunit;Note=Proteasome subunit alpha type 4 (EC 3.4.25.1) (20S proteasome alpha subunit C) (20S proteasome subunit alpha-3).;Transcript_evidence=AK059984 (DDBJ%2C Best hit);ORF_evidence=P0C1G8 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603),Cellular Component: proteasome core complex (GO:0005839),Cellular Component: proteasome core complex%2C alpha-subunit complex (GO:0019773),Molecular Function: endopeptidase activity (GO:0004175),Molecular Function: threonine-type endopeptidase activity (GO:0004298);InterPro=Proteasome%2C alpha-subunit%2C conserved site (IPR000426),Proteasome%2C subunit alpha/beta (IPR001353),Proteasome A-type subunit (IPR023332);NIAS_FLcDNA=006-212-G05;Oryzabase=14496;Expression=AK059984;TENOR=Os06t0176000-01;KEGG=Os06t0176000-01 (EC:3.4.25.1)
Chr06	irgsp1_rep	five_prime_UTR	3832018	3832107	.	+	.	Parent=Os06t0176000-01
Chr06	irgsp1_rep	CDS	3832108	3832860	.	+	0	Parent=Os06t0176000-01
Chr06	irgsp1_rep	three_prime_UTR	3832861	3833094	.	+	.	Parent=Os06t0176000-01
Chr06	irgsp1_rep	mRNA	3834088	3836629	.	-	.	ID=Os06t0176100-00;Name=Os06t0176100-00;Locus_id=Os06g0176100;Note=Similar to H0201G08.5 protein.;Transcript_evidence=CT836215 (DDBJ%2C Best hit);ORF_evidence=Q25AD8 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);TENOR=Os06t0176100-00;KEGG=Os06t0176100-00
Chr06	irgsp1_rep	five_prime_UTR	3836514	3836629	.	-	.	Parent=Os06t0176100-00
Chr06	irgsp1_rep	CDS	3836361	3836513	.	-	0	Parent=Os06t0176100-00
Chr06	irgsp1_rep	CDS	3836040	3836272	.	-	0	Parent=Os06t0176100-00
Chr06	irgsp1_rep	CDS	3835400	3835949	.	-	1	Parent=Os06t0176100-00
Chr06	irgsp1_rep	three_prime_UTR	3834088	3835399	.	-	.	Parent=Os06t0176100-00
Chr06	irgsp1_rep	mRNA	3834282	3835952	.	+	.	ID=Os06t0176125-00;Name=Os06t0176125-00;Locus_id=Os06g0176125;Note=Hypothetical protein.;Transcript_evidence=tplb0040n23 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0176125-00
Chr06	irgsp1_rep	five_prime_UTR	3834282	3834289	.	+	.	Parent=Os06t0176125-00
Chr06	irgsp1_rep	CDS	3834290	3834706	.	+	0	Parent=Os06t0176125-00
Chr06	irgsp1_rep	CDS	3834762	3834902	.	+	0	Parent=Os06t0176125-00
Chr06	irgsp1_rep	three_prime_UTR	3834903	3835036	.	+	.	Parent=Os06t0176125-00
Chr06	irgsp1_rep	three_prime_UTR	3835602	3835952	.	+	.	Parent=Os06t0176125-00
Chr06	irgsp1_rep	mRNA	3837428	3839409	.	-	.	ID=Os06t0176150-00;Name=Os06t0176150-00;Locus_id=Os06g0176150;Note=Similar to Ribosomal protein S15 containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B6TK08 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S15 (IPR000589),Ribosomal protein S15%2C bacterial-type (IPR005290),S15/NS1%2C RNA-binding (IPR009068);TENOR=Os06t0176150-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	3839310	3839409	.	-	0	Parent=Os06t0176150-00
Chr06	irgsp1_rep	CDS	3839095	3839273	.	-	2	Parent=Os06t0176150-00
Chr06	irgsp1_rep	CDS	3838896	3839007	.	-	0	Parent=Os06t0176150-00
Chr06	irgsp1_rep	CDS	3837768	3837820	.	-	2	Parent=Os06t0176150-00
Chr06	irgsp1_rep	CDS	3837428	3837646	.	-	0	Parent=Os06t0176150-00
Chr06	irgsp1_rep	mRNA	3840732	3844710	.	+	.	ID=Os06t0176200-01;Name=Os06t0176200-01;Locus_id=Os06g0176200;Note=Glycosyl transferase%2C family 31 protein.;Transcript_evidence=AK058356 (DDBJ%2C Best hit),AK102880 (DDBJ%2C Best hit);ORF_evidence=Q7FN01 (UniProt);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Glycosyl transferase%2C family 31 (IPR002659);NIAS_FLcDNA=001-014-E12,J033112G20;TENOR=Os06t0176200-01
Chr06	irgsp1_rep	five_prime_UTR	3840732	3840814	.	+	.	Parent=Os06t0176200-01
Chr06	irgsp1_rep	CDS	3840815	3840969	.	+	0	Parent=Os06t0176200-01
Chr06	irgsp1_rep	CDS	3841058	3841121	.	+	1	Parent=Os06t0176200-01
Chr06	irgsp1_rep	CDS	3841211	3841260	.	+	0	Parent=Os06t0176200-01
Chr06	irgsp1_rep	CDS	3841345	3841535	.	+	1	Parent=Os06t0176200-01
Chr06	irgsp1_rep	CDS	3841719	3841779	.	+	2	Parent=Os06t0176200-01
Chr06	irgsp1_rep	CDS	3841911	3841983	.	+	1	Parent=Os06t0176200-01
Chr06	irgsp1_rep	CDS	3842316	3842439	.	+	0	Parent=Os06t0176200-01
Chr06	irgsp1_rep	CDS	3842520	3842607	.	+	2	Parent=Os06t0176200-01
Chr06	irgsp1_rep	CDS	3843042	3843092	.	+	1	Parent=Os06t0176200-01
Chr06	irgsp1_rep	CDS	3843700	3843771	.	+	1	Parent=Os06t0176200-01
Chr06	irgsp1_rep	CDS	3844265	3844377	.	+	1	Parent=Os06t0176200-01
Chr06	irgsp1_rep	CDS	3844470	3844492	.	+	2	Parent=Os06t0176200-01
Chr06	irgsp1_rep	three_prime_UTR	3844493	3844710	.	+	.	Parent=Os06t0176200-01
Chr06	irgsp1_rep	mRNA	3846106	3848325	.	+	.	ID=Os06t0176300-00;Name=Os06t0176300-00;Locus_id=Os06g0176300;Note=2OG-Fe(II) oxygenase domain containing protein.;Transcript_evidence=CT837739 (DDBJ%2C Best hit);ORF_evidence=NP_001152138.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);TENOR=Os06t0176300-00;KEGG=Os06t0176300-00
Chr06	irgsp1_rep	five_prime_UTR	3846106	3846135	.	+	.	Parent=Os06t0176300-00
Chr06	irgsp1_rep	CDS	3846136	3847017	.	+	0	Parent=Os06t0176300-00
Chr06	irgsp1_rep	CDS	3847660	3847701	.	+	0	Parent=Os06t0176300-00
Chr06	irgsp1_rep	three_prime_UTR	3847702	3848325	.	+	.	Parent=Os06t0176300-00
Chr06	irgsp1_rep	mRNA	3851134	3852336	.	+	.	ID=Os06t0176500-00;Name=Os06t0176500-00;Locus_id=Os06g0176500;Note=Similar to leucoanthocyanidin dioxygenase.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001152138.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);TENOR=Os06t0176500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	3851134	3851352	.	+	0	Parent=Os06t0176500-00
Chr06	irgsp1_rep	CDS	3851461	3851720	.	+	0	Parent=Os06t0176500-00
Chr06	irgsp1_rep	CDS	3851919	3852246	.	+	1	Parent=Os06t0176500-00
Chr06	irgsp1_rep	CDS	3852307	3852336	.	+	0	Parent=Os06t0176500-00
Chr06	irgsp1_rep	mRNA	3853275	3853953	.	+	.	ID=Os06t0176600-01;Name=Os06t0176600-01;Locus_id=Os06g0176600;Note=Hypothetical conserved gene.;Transcript_evidence=AK062794 (DDBJ%2C Best hit);ORF_evidence=Q658D9 (UniProt);NIAS_FLcDNA=001-107-C06;Expression=AK062794;TENOR=Os06t0176600-01;KEGG=Os06t0176600-01
Chr06	irgsp1_rep	five_prime_UTR	3853275	3853327	.	+	.	Parent=Os06t0176600-01
Chr06	irgsp1_rep	CDS	3853328	3853687	.	+	0	Parent=Os06t0176600-01
Chr06	irgsp1_rep	three_prime_UTR	3853688	3853953	.	+	.	Parent=Os06t0176600-01
Chr06	irgsp1_rep	mRNA	3854007	3854303	.	+	.	ID=Os06t0176650-00;Name=Os06t0176650-00;Locus_id=Os06g0176650;Note=Similar to Leucoanthocyanidin dioxygenase.;Transcript_evidence=ab initio prediction;ORF_evidence=B6SSL8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);TENOR=Os06t0176650-00
Chr06	irgsp1_rep	CDS	3854007	3854303	.	+	0	Parent=Os06t0176650-00
Chr06	irgsp1_rep	mRNA	3855568	3857390	.	+	.	ID=Os06t0176700-01;Name=Os06t0176700-01;Locus_id=Os06g0176700;RAP-DB Gene Symbol Synonym(s)=OsHSL1;RAP-DB Gene Name Synonym(s)=HIS1-like 1;Note=HIS1-like protein%2C Fe(II)/2-oxoglutarate-dependent oxygenase;Transcript_evidence=AK241948;ORF_evidence=Q8H620;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Isopenicillin N synthase-like (IPR027443),Non-haem dioxygenase N-terminal domain (IPR026992),Oxoglutarate/iron-dependent dioxygenase (IPR005123);NIAS_FLcDNA=J075090N16;Manual Curation=April 8%2C 2020;Literature_PMID=31346065;TENOR=Os06t0176700-01;KEGG=Os06t0176700-01
Chr06	irgsp1_rep	five_prime_UTR	3855568	3855615	.	+	.	Parent=Os06t0176700-01
Chr06	irgsp1_rep	CDS	3855616	3855840	.	+	0	Parent=Os06t0176700-01
Chr06	irgsp1_rep	CDS	3855934	3856193	.	+	0	Parent=Os06t0176700-01
Chr06	irgsp1_rep	CDS	3856413	3856737	.	+	1	Parent=Os06t0176700-01
Chr06	irgsp1_rep	CDS	3856858	3857100	.	+	0	Parent=Os06t0176700-01
Chr06	irgsp1_rep	three_prime_UTR	3857101	3857390	.	+	.	Parent=Os06t0176700-01
Chr06	irgsp1_rep	mRNA	3855626	3857100	.	-	.	ID=Os06t0176750-00;Name=Os06t0176750-00;Locus_id=Os06g0176750;Note=Hypothetical protein.;Transcript_evidence=AK373427 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0176750-00
Chr06	irgsp1_rep	five_prime_UTR	3856355	3857100	.	-	.	Parent=Os06t0176750-00
Chr06	irgsp1_rep	five_prime_UTR	3856180	3856227	.	-	.	Parent=Os06t0176750-00
Chr06	irgsp1_rep	CDS	3855778	3856179	.	-	0	Parent=Os06t0176750-00
Chr06	irgsp1_rep	three_prime_UTR	3855626	3855777	.	-	.	Parent=Os06t0176750-00
Chr06	irgsp1_rep	mRNA	3858373	3860472	.	-	.	ID=Os06t0176801-00;Name=Os06t0176801-00;Locus_id=Os06g0176801;Note=Hypothetical protein.;Transcript_evidence=AK373427 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0176801-00
Chr06	irgsp1_rep	five_prime_UTR	3860137	3860472	.	-	.	Parent=Os06t0176801-00
Chr06	irgsp1_rep	five_prime_UTR	3859729	3859731	.	-	.	Parent=Os06t0176801-00
Chr06	irgsp1_rep	CDS	3859381	3859728	.	-	0	Parent=Os06t0176801-00
Chr06	irgsp1_rep	three_prime_UTR	3858988	3859380	.	-	.	Parent=Os06t0176801-00
Chr06	irgsp1_rep	three_prime_UTR	3858373	3858730	.	-	.	Parent=Os06t0176801-00
Chr06	irgsp1_rep	mRNA	3860275	3860719	.	+	.	ID=Os06t0176850-00;Name=Os06t0176850-00;Locus_id=Os06g0176850;Note=Similar to leucoanthocyanidin dioxygenase.;Transcript_evidence=CU406252 (DDBJ%2C Best hit);ORF_evidence=B6SSL8 (UniProt);TENOR=Os06t0176850-00;KEGG=Os06t0176850-00
Chr06	irgsp1_rep	five_prime_UTR	3860275	3860276	.	+	.	Parent=Os06t0176850-00
Chr06	irgsp1_rep	CDS	3860277	3860468	.	+	0	Parent=Os06t0176850-00
Chr06	irgsp1_rep	three_prime_UTR	3860469	3860719	.	+	.	Parent=Os06t0176850-00
Chr06	irgsp1_rep	mRNA	3861480	3865179	.	+	.	ID=Os06t0176900-00;Name=Os06t0176900-00;Locus_id=Os06g0176900;Note=Similar to Cystathionine gamma-synthase.;Transcript_evidence=ab initio prediction;ORF_evidence=B4FU01 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: 'de novo' L-methionine biosynthetic process (GO:0071266),Molecular Function: catalytic activity (GO:0003824),Molecular Function: cystathionine beta-lyase activity (GO:0004121),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Cys/Met metabolism%2C pyridoxal phosphate-dependent enzyme (IPR000277),Cystathionine beta-lyase%2C eukaryotic (IPR006238),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);TENOR=Os06t0176900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	3861480	3861584	.	+	0	Parent=Os06t0176900-00
Chr06	irgsp1_rep	CDS	3862737	3862807	.	+	0	Parent=Os06t0176900-00
Chr06	irgsp1_rep	CDS	3862895	3862986	.	+	1	Parent=Os06t0176900-00
Chr06	irgsp1_rep	CDS	3863088	3863175	.	+	2	Parent=Os06t0176900-00
Chr06	irgsp1_rep	CDS	3863272	3863383	.	+	1	Parent=Os06t0176900-00
Chr06	irgsp1_rep	CDS	3863511	3863607	.	+	0	Parent=Os06t0176900-00
Chr06	irgsp1_rep	CDS	3863718	3863799	.	+	2	Parent=Os06t0176900-00
Chr06	irgsp1_rep	CDS	3864161	3864281	.	+	1	Parent=Os06t0176900-00
Chr06	irgsp1_rep	CDS	3864467	3864574	.	+	0	Parent=Os06t0176900-00
Chr06	irgsp1_rep	CDS	3864725	3864827	.	+	0	Parent=Os06t0176900-00
Chr06	irgsp1_rep	CDS	3865004	3865179	.	+	2	Parent=Os06t0176900-00
Chr06	irgsp1_rep	mRNA	3866159	3868208	.	+	.	ID=Os06t0177000-01;Name=Os06t0177000-01;Locus_id=Os06g0177000;Oryzabase Gene Name Synonym(s)=CYTOCHROME B-C1 COMPLEX SUBUNIT8;Note=Similar to CytoChrome b-c1 complex subunit 8.;Transcript_evidence=AK120341 (DDBJ%2C Best hit),AK119716 (DDBJ%2C Best hit),AK243475 (DDBJ%2C Best hit);ORF_evidence=D6BQP2 (UniProt);GO=Molecular Function: ubiquinol-cytoChrome-c reductase activity (GO:0008121);InterPro=UcrQ (IPR004205),CytoChrome b-c1 complex%2C subunit 8 (IPR020101);NIAS_FLcDNA=J013061B12,002-157-F09,J100072F20;Oryzabase=23424;TENOR=Os06t0177000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	3866159	3866259	.	+	.	Parent=Os06t0177000-01
Chr06	irgsp1_rep	CDS	3866260	3866429	.	+	0	Parent=Os06t0177000-01
Chr06	irgsp1_rep	CDS	3867919	3867967	.	+	1	Parent=Os06t0177000-01
Chr06	irgsp1_rep	three_prime_UTR	3867968	3868208	.	+	.	Parent=Os06t0177000-01
Chr06	irgsp1_rep	mRNA	3870074	3871150	.	+	.	ID=Os06t0177100-01;Name=Os06t0177100-01;Locus_id=Os06g0177100;Note=Proteasome subunit alpha type 4 (EC 3.4.25.1) (20S proteasome alpha subunit C) (20S proteasome subunit alpha-3).;Transcript_evidence=AK059984 (DDBJ%2C Best hit);ORF_evidence=P0C1G8 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603),Cellular Component: proteasome core complex (GO:0005839),Cellular Component: proteasome core complex%2C alpha-subunit complex (GO:0019773),Molecular Function: endopeptidase activity (GO:0004175),Molecular Function: threonine-type endopeptidase activity (GO:0004298);InterPro=Proteasome%2C alpha-subunit%2C conserved site (IPR000426),Proteasome%2C subunit alpha/beta (IPR001353),Proteasome A-type subunit (IPR023332);NIAS_FLcDNA=006-212-G05;Expression=AK059984;TENOR=Os06t0177100-01;KEGG=Os06t0177100-01 (EC:3.4.25.1)
Chr06	irgsp1_rep	five_prime_UTR	3870074	3870163	.	+	.	Parent=Os06t0177100-01
Chr06	irgsp1_rep	CDS	3870164	3870916	.	+	0	Parent=Os06t0177100-01
Chr06	irgsp1_rep	three_prime_UTR	3870917	3871150	.	+	.	Parent=Os06t0177100-01
Chr06	irgsp1_rep	mRNA	3872144	3874685	.	-	.	ID=Os06t0177200-00;Name=Os06t0177200-00;Locus_id=Os06g0177200;Note=Similar to H0201G08.5 protein.;Transcript_evidence=CT836215 (DDBJ%2C Best hit);ORF_evidence=Q25AD8 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);TENOR=Os06t0177200-00;KEGG=Os06t0177200-00
Chr06	irgsp1_rep	five_prime_UTR	3874570	3874685	.	-	.	Parent=Os06t0177200-00
Chr06	irgsp1_rep	CDS	3874417	3874569	.	-	0	Parent=Os06t0177200-00
Chr06	irgsp1_rep	CDS	3874096	3874328	.	-	0	Parent=Os06t0177200-00
Chr06	irgsp1_rep	CDS	3873456	3874005	.	-	1	Parent=Os06t0177200-00
Chr06	irgsp1_rep	three_prime_UTR	3872144	3873455	.	-	.	Parent=Os06t0177200-00
Chr06	irgsp1_rep	mRNA	3872338	3874008	.	+	.	ID=Os06t0177225-00;Name=Os06t0177225-00;Locus_id=Os06g0177225;Note=Hypothetical protein.;Transcript_evidence=tplb0040n23 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0177225-00
Chr06	irgsp1_rep	five_prime_UTR	3872338	3872345	.	+	.	Parent=Os06t0177225-00
Chr06	irgsp1_rep	CDS	3872346	3872762	.	+	0	Parent=Os06t0177225-00
Chr06	irgsp1_rep	CDS	3872818	3872958	.	+	0	Parent=Os06t0177225-00
Chr06	irgsp1_rep	three_prime_UTR	3872959	3873092	.	+	.	Parent=Os06t0177225-00
Chr06	irgsp1_rep	three_prime_UTR	3873658	3874008	.	+	.	Parent=Os06t0177225-00
Chr06	irgsp1_rep	mRNA	3875484	3877465	.	-	.	ID=Os06t0177250-00;Name=Os06t0177250-00;Locus_id=Os06g0177250;Note=Similar to Ribosomal protein S15 containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B6TK08 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S15 (IPR000589),Ribosomal protein S15%2C bacterial-type (IPR005290),S15/NS1%2C RNA-binding (IPR009068);TENOR=Os06t0177250-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	3877366	3877465	.	-	0	Parent=Os06t0177250-00
Chr06	irgsp1_rep	CDS	3877151	3877329	.	-	2	Parent=Os06t0177250-00
Chr06	irgsp1_rep	CDS	3876952	3877063	.	-	0	Parent=Os06t0177250-00
Chr06	irgsp1_rep	CDS	3875824	3875876	.	-	2	Parent=Os06t0177250-00
Chr06	irgsp1_rep	CDS	3875484	3875702	.	-	0	Parent=Os06t0177250-00
Chr06	irgsp1_rep	mRNA	3878788	3882766	.	+	.	ID=Os06t0177300-01;Name=Os06t0177300-01;Locus_id=Os06g0177300;Note=Glycosyl transferase%2C family 31 protein.;Transcript_evidence=AK058356 (DDBJ%2C Best hit),AK102880 (DDBJ%2C Best hit);ORF_evidence=Q7FN01 (UniProt);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Glycosyl transferase%2C family 31 (IPR002659);NIAS_FLcDNA=001-014-E12,J033112G20;TENOR=Os06t0177300-01
Chr06	irgsp1_rep	five_prime_UTR	3878788	3878870	.	+	.	Parent=Os06t0177300-01
Chr06	irgsp1_rep	CDS	3878871	3879025	.	+	0	Parent=Os06t0177300-01
Chr06	irgsp1_rep	CDS	3879114	3879177	.	+	1	Parent=Os06t0177300-01
Chr06	irgsp1_rep	CDS	3879267	3879316	.	+	0	Parent=Os06t0177300-01
Chr06	irgsp1_rep	CDS	3879401	3879591	.	+	1	Parent=Os06t0177300-01
Chr06	irgsp1_rep	CDS	3879775	3879835	.	+	2	Parent=Os06t0177300-01
Chr06	irgsp1_rep	CDS	3879967	3880039	.	+	1	Parent=Os06t0177300-01
Chr06	irgsp1_rep	CDS	3880372	3880495	.	+	0	Parent=Os06t0177300-01
Chr06	irgsp1_rep	CDS	3880576	3880663	.	+	2	Parent=Os06t0177300-01
Chr06	irgsp1_rep	CDS	3881098	3881148	.	+	1	Parent=Os06t0177300-01
Chr06	irgsp1_rep	CDS	3881756	3881827	.	+	1	Parent=Os06t0177300-01
Chr06	irgsp1_rep	CDS	3882321	3882433	.	+	1	Parent=Os06t0177300-01
Chr06	irgsp1_rep	CDS	3882526	3882548	.	+	2	Parent=Os06t0177300-01
Chr06	irgsp1_rep	three_prime_UTR	3882549	3882766	.	+	.	Parent=Os06t0177300-01
Chr06	irgsp1_rep	mRNA	3884162	3886381	.	+	.	ID=Os06t0177600-00;Name=Os06t0177600-00;Locus_id=Os06g0177600;Note=2OG-Fe(II) oxygenase domain containing protein.;Transcript_evidence=CT837739 (DDBJ%2C Best hit);ORF_evidence=NP_001152138.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);TENOR=Os06t0177600-00;KEGG=Os06t0177600-00
Chr06	irgsp1_rep	five_prime_UTR	3884162	3884191	.	+	.	Parent=Os06t0177600-00
Chr06	irgsp1_rep	CDS	3884192	3885073	.	+	0	Parent=Os06t0177600-00
Chr06	irgsp1_rep	CDS	3885716	3885757	.	+	0	Parent=Os06t0177600-00
Chr06	irgsp1_rep	three_prime_UTR	3885758	3886381	.	+	.	Parent=Os06t0177600-00
Chr06	irgsp1_rep	mRNA	3889190	3890392	.	+	.	ID=Os06t0177700-00;Name=Os06t0177700-00;Locus_id=Os06g0177700;Note=Similar to leucoanthocyanidin dioxygenase.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001152138.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);TENOR=Os06t0177700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	3889190	3889408	.	+	0	Parent=Os06t0177700-00
Chr06	irgsp1_rep	CDS	3889517	3889776	.	+	0	Parent=Os06t0177700-00
Chr06	irgsp1_rep	CDS	3889975	3890302	.	+	1	Parent=Os06t0177700-00
Chr06	irgsp1_rep	CDS	3890363	3890392	.	+	0	Parent=Os06t0177700-00
Chr06	irgsp1_rep	mRNA	3891331	3892009	.	+	.	ID=Os06t0178400-01;Name=Os06t0178400-01;Locus_id=Os06g0178400;Note=Hypothetical conserved gene.;Transcript_evidence=AK062794 (DDBJ%2C Best hit);ORF_evidence=Q658D9 (UniProt);NIAS_FLcDNA=001-107-C06;Expression=AK062794;TENOR=Os06t0178400-01;KEGG=Os06t0178400-01
Chr06	irgsp1_rep	five_prime_UTR	3891331	3891383	.	+	.	Parent=Os06t0178400-01
Chr06	irgsp1_rep	CDS	3891384	3891743	.	+	0	Parent=Os06t0178400-01
Chr06	irgsp1_rep	three_prime_UTR	3891744	3892009	.	+	.	Parent=Os06t0178400-01
Chr06	irgsp1_rep	mRNA	3892063	3892359	.	+	.	ID=Os06t0178450-00;Name=Os06t0178450-00;Locus_id=Os06g0178450;Note=Similar to Leucoanthocyanidin dioxygenase.;Transcript_evidence=ab initio prediction;ORF_evidence=B6SSL8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);TENOR=Os06t0178450-00
Chr06	irgsp1_rep	CDS	3892063	3892359	.	+	0	Parent=Os06t0178450-00
Chr06	irgsp1_rep	mRNA	3893624	3895446	.	+	.	ID=Os06t0178500-01;Name=Os06t0178500-01;Locus_id=Os06g0178500;Note=Isopenicillin N synthase family protein.;Transcript_evidence=AK241948 (DDBJ%2C Best hit);ORF_evidence=NP_001152138.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Isopenicillin N synthase (IPR002283),Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=J075090N16;TENOR=Os06t0178500-01;KEGG=Os06t0178500-01
Chr06	irgsp1_rep	five_prime_UTR	3893624	3893671	.	+	.	Parent=Os06t0178500-01
Chr06	irgsp1_rep	CDS	3893672	3893896	.	+	0	Parent=Os06t0178500-01
Chr06	irgsp1_rep	CDS	3893990	3894249	.	+	0	Parent=Os06t0178500-01
Chr06	irgsp1_rep	CDS	3894469	3894793	.	+	1	Parent=Os06t0178500-01
Chr06	irgsp1_rep	CDS	3894914	3895156	.	+	0	Parent=Os06t0178500-01
Chr06	irgsp1_rep	three_prime_UTR	3895157	3895446	.	+	.	Parent=Os06t0178500-01
Chr06	irgsp1_rep	mRNA	3893682	3895156	.	-	.	ID=Os06t0178550-00;Name=Os06t0178550-00;Locus_id=Os06g0178550;Note=Hypothetical protein.;Transcript_evidence=AK373427 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0178550-00
Chr06	irgsp1_rep	five_prime_UTR	3894411	3895156	.	-	.	Parent=Os06t0178550-00
Chr06	irgsp1_rep	five_prime_UTR	3894236	3894283	.	-	.	Parent=Os06t0178550-00
Chr06	irgsp1_rep	CDS	3893834	3894235	.	-	0	Parent=Os06t0178550-00
Chr06	irgsp1_rep	three_prime_UTR	3893682	3893833	.	-	.	Parent=Os06t0178550-00
Chr06	irgsp1_rep	mRNA	3896429	3898528	.	-	.	ID=Os06t0178601-00;Name=Os06t0178601-00;Locus_id=Os06g0178601;Note=Hypothetical protein.;Transcript_evidence=AK373427 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0178601-00
Chr06	irgsp1_rep	five_prime_UTR	3898193	3898528	.	-	.	Parent=Os06t0178601-00
Chr06	irgsp1_rep	five_prime_UTR	3897785	3897787	.	-	.	Parent=Os06t0178601-00
Chr06	irgsp1_rep	CDS	3897437	3897784	.	-	0	Parent=Os06t0178601-00
Chr06	irgsp1_rep	three_prime_UTR	3897044	3897436	.	-	.	Parent=Os06t0178601-00
Chr06	irgsp1_rep	three_prime_UTR	3896429	3896786	.	-	.	Parent=Os06t0178601-00
Chr06	irgsp1_rep	mRNA	3898331	3898775	.	+	.	ID=Os06t0178650-00;Name=Os06t0178650-00;Locus_id=Os06g0178650;CGSNL Gene Symbol=HSL6;Oryzabase Gene Symbol Synonym(s)=OsHSL6;Oryzabase Gene Name Synonym(s)=HIS1-like gene 6;Note=Similar to leucoanthocyanidin dioxygenase.;Transcript_evidence=CU406252 (DDBJ%2C Best hit);ORF_evidence=B6SSL8 (UniProt);Oryzabase=23607;TENOR=Os06t0178650-00;KEGG=Os06t0178650-00
Chr06	irgsp1_rep	five_prime_UTR	3898331	3898332	.	+	.	Parent=Os06t0178650-00
Chr06	irgsp1_rep	CDS	3898333	3898524	.	+	0	Parent=Os06t0178650-00
Chr06	irgsp1_rep	three_prime_UTR	3898525	3898775	.	+	.	Parent=Os06t0178650-00
Chr06	irgsp1_rep	mRNA	3900488	3903056	.	+	.	ID=Os06t0178700-01;Name=Os06t0178700-01;Locus_id=Os06g0178700;CGSNL Gene Symbol=2ODD27;CGSNL Gene Name=2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 27;Oryzabase Gene Symbol Synonym(s)=2-ODD27%2C Os2-ODD27%2C Os2ODD27%2C OsHSL2%2C HSL2;Oryzabase Gene Name Synonym(s)=2-oxoglutarate-dependent dioxygenase 27%2C HIS1-like gene 2;Note=Similar to Iron/ascorbate-dependent oxidoreductase.;Transcript_evidence=AK102979 (DDBJ%2C Best hit);ORF_evidence=NP_001152138.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=J033115N23;Oryzabase=22628;Expression=AK102979;TENOR=Os06t0178700-01;KEGG=Os06t0178700-01
Chr06	irgsp1_rep	five_prime_UTR	3900488	3900581	.	+	.	Parent=Os06t0178700-01
Chr06	irgsp1_rep	CDS	3900582	3900809	.	+	0	Parent=Os06t0178700-01
Chr06	irgsp1_rep	CDS	3901398	3901657	.	+	0	Parent=Os06t0178700-01
Chr06	irgsp1_rep	CDS	3902081	3902411	.	+	1	Parent=Os06t0178700-01
Chr06	irgsp1_rep	CDS	3902668	3902913	.	+	0	Parent=Os06t0178700-01
Chr06	irgsp1_rep	three_prime_UTR	3902914	3903056	.	+	.	Parent=Os06t0178700-01
Chr06	irgsp1_rep	mRNA	3900592	3902848	.	-	.	ID=Os06t0178800-00;Name=Os06t0178800-00;Locus_id=Os06g0178800;Note=Hypothetical protein.;Transcript_evidence=AK373427 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0178800-00
Chr06	irgsp1_rep	five_prime_UTR	3902583	3902848	.	-	.	Parent=Os06t0178800-00
Chr06	irgsp1_rep	five_prime_UTR	3902014	3902415	.	-	.	Parent=Os06t0178800-00
Chr06	irgsp1_rep	five_prime_UTR	3901410	3901692	.	-	.	Parent=Os06t0178800-00
Chr06	irgsp1_rep	CDS	3901383	3901409	.	-	0	Parent=Os06t0178800-00
Chr06	irgsp1_rep	CDS	3900592	3900822	.	-	0	Parent=Os06t0178800-00
Chr06	irgsp1_rep	mRNA	3919532	3924302	.	+	.	ID=Os06t0178900-01;Name=Os06t0178900-01;Locus_id=Os06g0178900;CGSNL Gene Symbol=OVP2;CGSNL Gene Name=VACUOLAR H+-PYROPHOSPHATASE 2;Oryzabase Gene Symbol Synonym(s)=OsOVP2;Oryzabase Gene Name Synonym(s)=vacuolar H+-pyrophosphatase 2%2C V-PPase 2%2C class II V-PPase;Note=Vacuolar H+-pyrophosphatase (EC 3.6.1.1) (Ovp2).;Transcript_evidence=AK066933 (DDBJ%2C Best hit);ORF_evidence=P93410 (UniProt);GO=Biological Process: proton transport (GO:0015992),Cellular Component: membrane (GO:0016020),Molecular Function: inorganic diphosphatase activity (GO:0004427),Molecular Function: hydrogen-translocating pyrophosphatase activity (GO:0009678);InterPro=Pyrophosphate-energised proton pump (IPR004131);NIAS_FLcDNA=J013091F19;Oryzabase=14468;Expression=AK066933;TENOR=Os06t0178900-01;KEGG=Os06t0178900-01 (EC:3.6.1.1)
Chr06	irgsp1_rep	five_prime_UTR	3919532	3919640	.	+	.	Parent=Os06t0178900-01
Chr06	irgsp1_rep	CDS	3919641	3919893	.	+	0	Parent=Os06t0178900-01
Chr06	irgsp1_rep	CDS	3921288	3921862	.	+	2	Parent=Os06t0178900-01
Chr06	irgsp1_rep	CDS	3922004	3922383	.	+	0	Parent=Os06t0178900-01
Chr06	irgsp1_rep	CDS	3922486	3922572	.	+	1	Parent=Os06t0178900-01
Chr06	irgsp1_rep	CDS	3922658	3922988	.	+	1	Parent=Os06t0178900-01
Chr06	irgsp1_rep	CDS	3923121	3923531	.	+	0	Parent=Os06t0178900-01
Chr06	irgsp1_rep	CDS	3923615	3923674	.	+	0	Parent=Os06t0178900-01
Chr06	irgsp1_rep	CDS	3923771	3923977	.	+	0	Parent=Os06t0178900-01
Chr06	irgsp1_rep	three_prime_UTR	3923978	3924302	.	+	.	Parent=Os06t0178900-01
Chr06	irgsp1_rep	mRNA	3919643	3923967	.	-	.	ID=Os06t0178950-00;Name=Os06t0178950-00;Locus_id=Os06g0178950;Note=Hypothetical protein.;Transcript_evidence=tplb0034o06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0178950-00
Chr06	irgsp1_rep	five_prime_UTR	3923739	3923967	.	-	.	Parent=Os06t0178950-00
Chr06	irgsp1_rep	five_prime_UTR	3923342	3923553	.	-	.	Parent=Os06t0178950-00
Chr06	irgsp1_rep	CDS	3923119	3923341	.	-	0	Parent=Os06t0178950-00
Chr06	irgsp1_rep	CDS	3922868	3922986	.	-	2	Parent=Os06t0178950-00
Chr06	irgsp1_rep	three_prime_UTR	3922655	3922867	.	-	.	Parent=Os06t0178950-00
Chr06	irgsp1_rep	three_prime_UTR	3922484	3922569	.	-	.	Parent=Os06t0178950-00
Chr06	irgsp1_rep	three_prime_UTR	3922016	3922380	.	-	.	Parent=Os06t0178950-00
Chr06	irgsp1_rep	three_prime_UTR	3921295	3921871	.	-	.	Parent=Os06t0178950-00
Chr06	irgsp1_rep	three_prime_UTR	3919643	3919901	.	-	.	Parent=Os06t0178950-00
Chr06	irgsp1_rep	mRNA	3924758	3927818	.	-	.	ID=Os06t0179000-01;Name=Os06t0179000-01;Locus_id=Os06g0179000;Note=Glycoside hydrolase family 79%2C N-terminal protein.;Transcript_evidence=AK065263 (DDBJ%2C Best hit);ORF_evidence=A2Y9Y7 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C acting on glycosyl bonds (GO:0016798),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 79 (IPR005199),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J013002K06;Expression=AK065263;TENOR=Os06t0179000-01;KEGG=Os06t0179000-01
Chr06	irgsp1_rep	five_prime_UTR	3927694	3927818	.	-	.	Parent=Os06t0179000-01
Chr06	irgsp1_rep	CDS	3927478	3927693	.	-	0	Parent=Os06t0179000-01
Chr06	irgsp1_rep	CDS	3927341	3927380	.	-	0	Parent=Os06t0179000-01
Chr06	irgsp1_rep	CDS	3927075	3927258	.	-	2	Parent=Os06t0179000-01
Chr06	irgsp1_rep	CDS	3926825	3926973	.	-	1	Parent=Os06t0179000-01
Chr06	irgsp1_rep	CDS	3926290	3926523	.	-	2	Parent=Os06t0179000-01
Chr06	irgsp1_rep	CDS	3925987	3926176	.	-	2	Parent=Os06t0179000-01
Chr06	irgsp1_rep	CDS	3925785	3925910	.	-	1	Parent=Os06t0179000-01
Chr06	irgsp1_rep	CDS	3925432	3925531	.	-	1	Parent=Os06t0179000-01
Chr06	irgsp1_rep	CDS	3924989	3925330	.	-	0	Parent=Os06t0179000-01
Chr06	irgsp1_rep	three_prime_UTR	3924758	3924988	.	-	.	Parent=Os06t0179000-01
Chr06	irgsp1_rep	mRNA	3926026	3927613	.	+	.	ID=Os06t0179050-00;Name=Os06t0179050-00;Locus_id=Os06g0179050;Note=Hypothetical gene.;Transcript_evidence=BT085373 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0179050-00
Chr06	irgsp1_rep	five_prime_UTR	3926026	3926168	.	+	.	Parent=Os06t0179050-00
Chr06	irgsp1_rep	five_prime_UTR	3926285	3926514	.	+	.	Parent=Os06t0179050-00
Chr06	irgsp1_rep	five_prime_UTR	3926810	3926837	.	+	.	Parent=Os06t0179050-00
Chr06	irgsp1_rep	CDS	3926838	3926994	.	+	0	Parent=Os06t0179050-00
Chr06	irgsp1_rep	CDS	3927093	3927281	.	+	2	Parent=Os06t0179050-00
Chr06	irgsp1_rep	CDS	3927467	3927613	.	+	2	Parent=Os06t0179050-00
Chr06	irgsp1_rep	mRNA	3932020	3933032	.	+	.	ID=Os06t0179100-00;Name=Os06t0179100-00;Locus_id=Os06g0179100;Note=Similar to H0306F03.13 protein.;Transcript_evidence=EU963950 (DDBJ);ORF_evidence=Q25A62 (UniProt);InterPro=Sterile alpha motif/pointed domain (IPR013761);TENOR=Os06t0179100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	3932020	3932319	.	+	0	Parent=Os06t0179100-00
Chr06	irgsp1_rep	CDS	3932421	3933032	.	+	0	Parent=Os06t0179100-00
Chr06	irgsp1_rep	mRNA	3934027	3937229	.	-	.	ID=Os06t0179200-01;Name=Os06t0179200-01;Locus_id=Os06g0179200;Note=Similar to Nodulin-like protein.;Transcript_evidence=AK101156 (DDBJ%2C Best hit);ORF_evidence=Q8H6R3 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Nodulin-like (IPR010658),Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J033027I22;Expression=AK101156;TENOR=Os06t0179200-01;KEGG=Os06t0179200-01
Chr06	irgsp1_rep	five_prime_UTR	3937153	3937229	.	-	.	Parent=Os06t0179200-01
Chr06	irgsp1_rep	CDS	3936820	3937152	.	-	0	Parent=Os06t0179200-01
Chr06	irgsp1_rep	CDS	3935307	3936196	.	-	0	Parent=Os06t0179200-01
Chr06	irgsp1_rep	CDS	3934370	3934850	.	-	1	Parent=Os06t0179200-01
Chr06	irgsp1_rep	three_prime_UTR	3934027	3934369	.	-	.	Parent=Os06t0179200-01
Chr06	irgsp1_rep	mRNA	3941560	3943507	.	-	.	ID=Os06t0179400-01;Name=Os06t0179400-01;Locus_id=Os06g0179400;Note=Hypothetical protein.;Transcript_evidence=AK103645 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033135B09;TENOR=Os06t0179400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	3942878	3943507	.	-	0	Parent=Os06t0179400-01
Chr06	irgsp1_rep	three_prime_UTR	3941560	3942877	.	-	.	Parent=Os06t0179400-01
Chr06	irgsp1_rep	mRNA	3941687	3943447	.	+	.	ID=Os06t0179500-00;Name=Os06t0179500-00;Locus_id=Os06g0179500;Note=Protein of unknown function DUF247%2C plant family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001056969.1 (RefSeq);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);TENOR=Os06t0179500-00;KEGG=Os06t0179500-00
Chr06	irgsp1_rep	CDS	3941687	3943447	.	+	0	Parent=Os06t0179500-00
Chr06	irgsp1_rep	mRNA	3947927	3952217	.	-	.	ID=Os06t0179700-01;Name=Os06t0179700-01;Locus_id=Os06g0179700;Oryzabase Gene Symbol Synonym(s)=OsPP2C54%2C PP2C54%2C OsPP84;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C54%2C protein phosphatase 2C 54%2C protein phosphatase 84;Note=Similar to DNA-binding protein phosphatase 2C.;Transcript_evidence=AK065602 (DDBJ%2C Best hit);ORF_evidence=C4JAG1 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J013026O16;Oryzabase=17927;Expression=AK065602;TENOR=Os06t0179700-01;KEGG=Os06t0179700-01 (EC:3.1.3.16)
Chr06	irgsp1_rep	five_prime_UTR	3951969	3952217	.	-	.	Parent=Os06t0179700-01
Chr06	irgsp1_rep	CDS	3951852	3951968	.	-	0	Parent=Os06t0179700-01
Chr06	irgsp1_rep	CDS	3950067	3950267	.	-	0	Parent=Os06t0179700-01
Chr06	irgsp1_rep	CDS	3949269	3949465	.	-	0	Parent=Os06t0179700-01
Chr06	irgsp1_rep	CDS	3948307	3948874	.	-	1	Parent=Os06t0179700-01
Chr06	irgsp1_rep	three_prime_UTR	3947927	3948306	.	-	.	Parent=Os06t0179700-01
Chr06	irgsp1_rep	mRNA	3956913	3961586	.	-	.	ID=Os06t0179800-01;Name=Os06t0179800-01;Locus_id=Os06g0179800;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=AK121252 (DDBJ%2C Best hit);ORF_evidence=A2Y9Z2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J023101N24;Expression=AK121252;TENOR=Os06t0179800-01;KEGG=Os06t0179800-01
Chr06	irgsp1_rep	five_prime_UTR	3961277	3961586	.	-	.	Parent=Os06t0179800-01
Chr06	irgsp1_rep	five_prime_UTR	3960843	3961207	.	-	.	Parent=Os06t0179800-01
Chr06	irgsp1_rep	five_prime_UTR	3960591	3960766	.	-	.	Parent=Os06t0179800-01
Chr06	irgsp1_rep	CDS	3960260	3960590	.	-	0	Parent=Os06t0179800-01
Chr06	irgsp1_rep	CDS	3959559	3959714	.	-	2	Parent=Os06t0179800-01
Chr06	irgsp1_rep	CDS	3959383	3959451	.	-	2	Parent=Os06t0179800-01
Chr06	irgsp1_rep	CDS	3957396	3958660	.	-	2	Parent=Os06t0179800-01
Chr06	irgsp1_rep	three_prime_UTR	3957221	3957395	.	-	.	Parent=Os06t0179800-01
Chr06	irgsp1_rep	three_prime_UTR	3956913	3957057	.	-	.	Parent=Os06t0179800-01
Chr06	irgsp1_rep	mRNA	3959106	3960929	.	-	.	ID=Os06t0179800-02;Name=Os06t0179800-02;Locus_id=Os06g0179800;Note=Hypothetical conserved gene.;Transcript_evidence=AK065817 (DDBJ%2C Best hit);ORF_evidence=Q5SMK3 (UniProt);InterPro=Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J013043B04;Expression=AK065817;TENOR=Os06t0179800-02;KEGG=Os06t0179800-02
Chr06	irgsp1_rep	five_prime_UTR	3960843	3960929	.	-	.	Parent=Os06t0179800-02
Chr06	irgsp1_rep	five_prime_UTR	3960591	3960766	.	-	.	Parent=Os06t0179800-02
Chr06	irgsp1_rep	CDS	3960260	3960590	.	-	0	Parent=Os06t0179800-02
Chr06	irgsp1_rep	CDS	3959559	3959714	.	-	2	Parent=Os06t0179800-02
Chr06	irgsp1_rep	CDS	3959354	3959451	.	-	2	Parent=Os06t0179800-02
Chr06	irgsp1_rep	three_prime_UTR	3959106	3959353	.	-	.	Parent=Os06t0179800-02
Chr06	irgsp1_rep	mRNA	3961923	3964854	.	-	.	ID=Os06t0179900-01;Name=Os06t0179900-01;Locus_id=Os06g0179900;CGSNL Gene Symbol=GLPT2;CGSNL Gene Name=GLYCEROL-3-PHOSPHATE TRANSPORTER 2;Oryzabase Gene Symbol Synonym(s)=OsGlpT2%2C GlpT2;Oryzabase Gene Name Synonym(s)=GlpT protein 2%2C Glycerol-3-phosphate transporter 2%2C G3P transporter 2;Note=Major facilitator superfamily protein.;Transcript_evidence=AK287929 (DDBJ%2C Best hit);ORF_evidence=NP_001147465.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J065218O16;Oryzabase=23015;TENOR=Os06t0179900-01;KEGG=Os06t0179900-01
Chr06	irgsp1_rep	five_prime_UTR	3964777	3964854	.	-	.	Parent=Os06t0179900-01
Chr06	irgsp1_rep	CDS	3963879	3964776	.	-	0	Parent=Os06t0179900-01
Chr06	irgsp1_rep	CDS	3962446	3962963	.	-	2	Parent=Os06t0179900-01
Chr06	irgsp1_rep	three_prime_UTR	3961923	3962445	.	-	.	Parent=Os06t0179900-01
Chr06	irgsp1_rep	mRNA	3963899	3964915	.	+	.	ID=Os06t0179950-00;Name=Os06t0179950-00;Locus_id=Os06g0179950;Note=Hypothetical protein.;Transcript_evidence=AK369010 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0179950-00
Chr06	irgsp1_rep	five_prime_UTR	3963899	3963900	.	+	.	Parent=Os06t0179950-00
Chr06	irgsp1_rep	CDS	3963901	3964143	.	+	0	Parent=Os06t0179950-00
Chr06	irgsp1_rep	CDS	3964794	3964892	.	+	0	Parent=Os06t0179950-00
Chr06	irgsp1_rep	three_prime_UTR	3964893	3964915	.	+	.	Parent=Os06t0179950-00
Chr06	irgsp1_rep	mRNA	3966107	3969423	.	-	.	ID=Os06t0180000-01;Name=Os06t0180000-01;Locus_id=Os06g0180000;Note=Similar to Root determined nodulation 1.;Transcript_evidence=AK069615 (DDBJ%2C Best hit);ORF_evidence=E9KID2 (UniProt);NIAS_FLcDNA=J023019A08;TENOR=Os06t0180000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	3969145	3969423	.	-	0	Parent=Os06t0180000-01
Chr06	irgsp1_rep	CDS	3968259	3968326	.	-	0	Parent=Os06t0180000-01
Chr06	irgsp1_rep	CDS	3967976	3968177	.	-	1	Parent=Os06t0180000-01
Chr06	irgsp1_rep	CDS	3967793	3967890	.	-	0	Parent=Os06t0180000-01
Chr06	irgsp1_rep	CDS	3967613	3967682	.	-	1	Parent=Os06t0180000-01
Chr06	irgsp1_rep	CDS	3967449	3967520	.	-	0	Parent=Os06t0180000-01
Chr06	irgsp1_rep	CDS	3967254	3967367	.	-	0	Parent=Os06t0180000-01
Chr06	irgsp1_rep	CDS	3966641	3966712	.	-	0	Parent=Os06t0180000-01
Chr06	irgsp1_rep	three_prime_UTR	3966107	3966640	.	-	.	Parent=Os06t0180000-01
Chr06	irgsp1_rep	mRNA	3967253	3969392	.	+	.	ID=Os06t0180050-00;Name=Os06t0180050-00;Locus_id=Os06g0180050;Note=Hypothetical protein.;Transcript_evidence=tplb0025h12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0180050-00
Chr06	irgsp1_rep	five_prime_UTR	3967253	3967356	.	+	.	Parent=Os06t0180050-00
Chr06	irgsp1_rep	five_prime_UTR	3967440	3967516	.	+	.	Parent=Os06t0180050-00
Chr06	irgsp1_rep	five_prime_UTR	3967735	3967778	.	+	.	Parent=Os06t0180050-00
Chr06	irgsp1_rep	CDS	3967779	3967884	.	+	0	Parent=Os06t0180050-00
Chr06	irgsp1_rep	CDS	3967971	3968107	.	+	2	Parent=Os06t0180050-00
Chr06	irgsp1_rep	three_prime_UTR	3968108	3968205	.	+	.	Parent=Os06t0180050-00
Chr06	irgsp1_rep	three_prime_UTR	3968285	3968320	.	+	.	Parent=Os06t0180050-00
Chr06	irgsp1_rep	three_prime_UTR	3969132	3969392	.	+	.	Parent=Os06t0180050-00
Chr06	irgsp1_rep	mRNA	3972493	3972960	.	-	.	ID=Os06t0180100-00;Name=Os06t0180100-00;Locus_id=Os06g0180100;Oryzabase Gene Name Synonym(s)=Extensin family protein;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8H604 (UniProt);Oryzabase=21931;TENOR=Os06t0180100-00;KEGG=Os06t0180100-00
Chr06	irgsp1_rep	CDS	3972837	3972960	.	-	0	Parent=Os06t0180100-00
Chr06	irgsp1_rep	CDS	3972493	3972749	.	-	2	Parent=Os06t0180100-00
Chr06	irgsp1_rep	mRNA	3981988	3982486	.	-	.	ID=Os06t0180300-00;Name=Os06t0180300-00;Locus_id=Os06g0180300;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5SMJ6 (UniProt);TENOR=Os06t0180300-00
Chr06	irgsp1_rep	CDS	3982408	3982486	.	-	0	Parent=Os06t0180300-00
Chr06	irgsp1_rep	CDS	3981988	3982205	.	-	2	Parent=Os06t0180300-00
Chr06	irgsp1_rep	mRNA	3992690	3993053	.	-	.	ID=Os06t0180533-00;Name=Os06t0180533-00;Locus_id=Os06g0180533;Note=Similar to predicted protein.;Transcript_evidence=EU943442 (DDBJ);ORF_evidence=XP_002321824.1 (RefSeq);InterPro=Cysteine%2C histidine-dependent amidohydrolase/peptidase (IPR007921);TENOR=Os06t0180533-00;KEGG=Os06t0180533-00
Chr06	irgsp1_rep	five_prime_UTR	3993035	3993053	.	-	.	Parent=Os06t0180533-00
Chr06	irgsp1_rep	CDS	3992933	3993034	.	-	0	Parent=Os06t0180533-00
Chr06	irgsp1_rep	three_prime_UTR	3992690	3992932	.	-	.	Parent=Os06t0180533-00
Chr06	irgsp1_rep	mRNA	3995309	3996180	.	+	.	ID=Os06t0180666-00;Name=Os06t0180666-00;Locus_id=Os06g0180666;Note=Hypothetical gene.;Transcript_evidence=BT055164 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0180666-00;KEGG=Os06t0180666-00
Chr06	irgsp1_rep	five_prime_UTR	3995309	3995434	.	+	.	Parent=Os06t0180666-00
Chr06	irgsp1_rep	CDS	3995435	3995674	.	+	0	Parent=Os06t0180666-00
Chr06	irgsp1_rep	CDS	3995759	3995989	.	+	0	Parent=Os06t0180666-00
Chr06	irgsp1_rep	three_prime_UTR	3995990	3996180	.	+	.	Parent=Os06t0180666-00
Chr06	irgsp1_rep	mRNA	4008139	4009941	.	+	.	ID=Os06t0181100-01;Name=Os06t0181100-01;Locus_id=Os06g0181100;Note=Octicosapeptide/Phox/Bem1p domain containing protein.;Transcript_evidence=AK073372 (DDBJ%2C Best hit);ORF_evidence=NP_001056976.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Phox/Bem1p (IPR000270);NIAS_FLcDNA=J033026L04;TENOR=Os06t0181100-01;KEGG=Os06t0181100-01
Chr06	irgsp1_rep	five_prime_UTR	4008139	4008438	.	+	.	Parent=Os06t0181100-01
Chr06	irgsp1_rep	CDS	4008439	4009941	.	+	0	Parent=Os06t0181100-01
Chr06	irgsp1_rep	mRNA	4010785	4013536	.	+	.	ID=Os06t0181200-01;Name=Os06t0181200-01;Locus_id=Os06g0181200;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK067771 (DDBJ%2C Best hit);ORF_evidence=XP_002877531.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013117A13;Expression=AK067771;TENOR=Os06t0181200-01;KEGG=Os06t0181200-01
Chr06	irgsp1_rep	five_prime_UTR	4010785	4010835	.	+	.	Parent=Os06t0181200-01
Chr06	irgsp1_rep	CDS	4010836	4011181	.	+	0	Parent=Os06t0181200-01
Chr06	irgsp1_rep	CDS	4011306	4011457	.	+	2	Parent=Os06t0181200-01
Chr06	irgsp1_rep	CDS	4011541	4011612	.	+	0	Parent=Os06t0181200-01
Chr06	irgsp1_rep	CDS	4011706	4011858	.	+	0	Parent=Os06t0181200-01
Chr06	irgsp1_rep	CDS	4011934	4012097	.	+	0	Parent=Os06t0181200-01
Chr06	irgsp1_rep	CDS	4012175	4012322	.	+	1	Parent=Os06t0181200-01
Chr06	irgsp1_rep	CDS	4012715	4012837	.	+	0	Parent=Os06t0181200-01
Chr06	irgsp1_rep	CDS	4012959	4013046	.	+	0	Parent=Os06t0181200-01
Chr06	irgsp1_rep	CDS	4013136	4013314	.	+	2	Parent=Os06t0181200-01
Chr06	irgsp1_rep	three_prime_UTR	4013315	4013536	.	+	.	Parent=Os06t0181200-01
Chr06	irgsp1_rep	mRNA	4015962	4019316	.	+	.	ID=Os06t0181300-01;Name=Os06t0181300-01;Locus_id=Os06g0181300;CGSNL Gene Symbol=AID1;CGSNL Gene Name=ANTHER INDEHISCENCE 1;Oryzabase Gene Symbol Synonym(s)=aid1%2C OsAID1%2C DLN159%2C OsDLN159;Oryzabase Gene Name Synonym(s)=anther indehiscence-1%2C Anther Indehiscence1%2C DLN repressor 159%2C DLN motif protein 159;Note=Similar to terminal acidic SANT 1.;Transcript_evidence=AK241456 (DDBJ%2C Best hit);ORF_evidence=Q6T804 (UniProt);NIAS_FLcDNA=J065163O14;Oryzabase=6004;TENOR=Os06t0181300-01;KEGG=Os06t0181300-01
Chr06	irgsp1_rep	five_prime_UTR	4015962	4016073	.	+	.	Parent=Os06t0181300-01
Chr06	irgsp1_rep	CDS	4016074	4016722	.	+	0	Parent=Os06t0181300-01
Chr06	irgsp1_rep	CDS	4017525	4017874	.	+	2	Parent=Os06t0181300-01
Chr06	irgsp1_rep	CDS	4018778	4018786	.	+	0	Parent=Os06t0181300-01
Chr06	irgsp1_rep	three_prime_UTR	4018787	4018844	.	+	.	Parent=Os06t0181300-01
Chr06	irgsp1_rep	three_prime_UTR	4018931	4019316	.	+	.	Parent=Os06t0181300-01
Chr06	irgsp1_rep	mRNA	4019847	4022584	.	+	.	ID=Os06t0181400-01;Name=Os06t0181400-01;Locus_id=Os06g0181400;Note=Similar to oxidoreductase.;Transcript_evidence=AK242975 (DDBJ%2C Best hit);ORF_evidence=NP_001152353.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FAD dependent oxidoreductase (IPR006076);NIAS_FLcDNA=J090092I02;TENOR=Os06t0181400-01;KEGG=Os06t0181400-01
Chr06	irgsp1_rep	five_prime_UTR	4019847	4019884	.	+	.	Parent=Os06t0181400-01
Chr06	irgsp1_rep	CDS	4019885	4020097	.	+	0	Parent=Os06t0181400-01
Chr06	irgsp1_rep	CDS	4020202	4020310	.	+	0	Parent=Os06t0181400-01
Chr06	irgsp1_rep	CDS	4020450	4020574	.	+	2	Parent=Os06t0181400-01
Chr06	irgsp1_rep	CDS	4020702	4020755	.	+	0	Parent=Os06t0181400-01
Chr06	irgsp1_rep	CDS	4020849	4020995	.	+	0	Parent=Os06t0181400-01
Chr06	irgsp1_rep	CDS	4021074	4021185	.	+	0	Parent=Os06t0181400-01
Chr06	irgsp1_rep	CDS	4021460	4021586	.	+	2	Parent=Os06t0181400-01
Chr06	irgsp1_rep	CDS	4021676	4022126	.	+	1	Parent=Os06t0181400-01
Chr06	irgsp1_rep	three_prime_UTR	4022127	4022584	.	+	.	Parent=Os06t0181400-01
Chr06	irgsp1_rep	mRNA	4025530	4030375	.	-	.	ID=Os06t0181500-01;Name=Os06t0181500-01;Locus_id=Os06g0181500;CGSNL Gene Symbol=AHA10;CGSNL Gene Name=H+-ATPASE 10;Oryzabase Gene Symbol Synonym(s)=OSA10%2C OsA10%2C osAHA10%2C AHA10;Oryzabase Gene Name Synonym(s)=plasma membrane H+-ATPase 10%2C PM H+-ATPase 10%2C plasma membrane H+ P-Type ATPase 10;Note=Similar to Plasma membrane H+-ATPase (EC 3.6.1.3).;Transcript_evidence=AK100878 (DDBJ%2C Best hit);ORF_evidence=Q8RW25 (UniProt);GO=Biological Process: ATP catabolic process (GO:0006200),Biological Process: ATP biosynthetic process (GO:0006754),Biological Process: cation transport (GO:0006812),Biological Process: metabolic process (GO:0008152),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662),Molecular Function: ATPase activity (GO:0016887),Molecular Function: metal ion binding (GO:0046872);InterPro=ATPase%2C P-type%2C H+ transporting proton pump (IPR000695),ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),ATPase%2C P-type cation-transporter%2C N-terminal (IPR004014),Haloacid dehalogenase-like hydrolase (IPR005834),ATPase%2C P-type%2C plasma-membrane proton-efflux (IPR006534),ATPase%2C P-type%2C ATPase-associated domain (IPR008250),ATPase%2C P-type phosphorylation site (IPR018303),HAD-like domain (IPR023214),ATPase%2C P-type%2C  transmembrane domain (IPR023298),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C  P-type%2C cytoplasmic transduction domain A (IPR023300);NIAS_FLcDNA=J023127C21;Oryzabase=11195;Expression=AK100878;TENOR=Os06t0181500-01;KEGG=Os06t0181500-01 (EC:3.6.1.3%2C EC:3.6.3.6)
Chr06	irgsp1_rep	five_prime_UTR	4030198	4030375	.	-	.	Parent=Os06t0181500-01
Chr06	irgsp1_rep	CDS	4030147	4030197	.	-	0	Parent=Os06t0181500-01
Chr06	irgsp1_rep	CDS	4027537	4030062	.	-	0	Parent=Os06t0181500-01
Chr06	irgsp1_rep	CDS	4026137	4026139	.	-	0	Parent=Os06t0181500-01
Chr06	irgsp1_rep	three_prime_UTR	4025970	4026136	.	-	.	Parent=Os06t0181500-01
Chr06	irgsp1_rep	three_prime_UTR	4025530	4025843	.	-	.	Parent=Os06t0181500-01
Chr06	irgsp1_rep	mRNA	4027392	4030375	.	-	.	ID=Os06t0181500-02;Name=Os06t0181500-02;Locus_id=Os06g0181500;CGSNL Gene Symbol=AHA10;CGSNL Gene Name=H+-ATPASE 10;Oryzabase Gene Symbol Synonym(s)=OSA10%2C OsA10%2C osAHA10%2C AHA10;Oryzabase Gene Name Synonym(s)=plasma membrane H+-ATPase 10%2C PM H+-ATPase 10%2C plasma membrane H+ P-Type ATPase 10;Note=Similar to Plasma membrane H+-ATPase.;Transcript_evidence=AK068950 (DDBJ%2C Best hit);ORF_evidence=Q8RW25 (UniProt);GO=Biological Process: ATP catabolic process (GO:0006200),Biological Process: ATP biosynthetic process (GO:0006754),Biological Process: cation transport (GO:0006812),Biological Process: metabolic process (GO:0008152),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662),Molecular Function: ATPase activity (GO:0016887),Molecular Function: metal ion binding (GO:0046872);InterPro=ATPase%2C P-type%2C H+ transporting proton pump (IPR000695),ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),ATPase%2C P-type cation-transporter%2C N-terminal (IPR004014),Haloacid dehalogenase-like hydrolase (IPR005834),ATPase%2C P-type%2C plasma-membrane proton-efflux (IPR006534),ATPase%2C P-type%2C ATPase-associated domain (IPR008250),ATPase%2C P-type phosphorylation site (IPR018303),HAD-like domain (IPR023214),ATPase%2C P-type%2C  transmembrane domain (IPR023298),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C  P-type%2C cytoplasmic transduction domain A (IPR023300);NIAS_FLcDNA=J023001P16;Oryzabase=11195;Expression=AK068950;TENOR=Os06t0181500-02;KEGG=Os06t0181500-02 (EC:3.6.3.6)
Chr06	irgsp1_rep	five_prime_UTR	4030198	4030375	.	-	.	Parent=Os06t0181500-02
Chr06	irgsp1_rep	CDS	4030147	4030197	.	-	0	Parent=Os06t0181500-02
Chr06	irgsp1_rep	CDS	4027504	4030062	.	-	0	Parent=Os06t0181500-02
Chr06	irgsp1_rep	three_prime_UTR	4027392	4027503	.	-	.	Parent=Os06t0181500-02
Chr06	irgsp1_rep	mRNA	4033605	4034172	.	-	.	ID=Os06t0181566-01;Name=Os06t0181566-01;Locus_id=Os06g0181566;Oryzabase Gene Name Synonym(s)=Ribosomal protein L39;Note=Similar to 60S ribosomal protein L39.;Transcript_evidence=AK287753 (DDBJ%2C Best hit);ORF_evidence=Q5SMI4 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L39e (IPR000077),Ribosomal protein L39e%2C conserved site (IPR020083),Ribosomal protein L39e domain (IPR023626);NIAS_FLcDNA=J065157D24;Oryzabase=17682;TENOR=Os06t0181566-01;KEGG=Os06t0181566-01
Chr06	irgsp1_rep	five_prime_UTR	4034130	4034172	.	-	.	Parent=Os06t0181566-01
Chr06	irgsp1_rep	CDS	4034127	4034129	.	-	0	Parent=Os06t0181566-01
Chr06	irgsp1_rep	CDS	4033939	4034042	.	-	0	Parent=Os06t0181566-01
Chr06	irgsp1_rep	CDS	4033795	4033843	.	-	1	Parent=Os06t0181566-01
Chr06	irgsp1_rep	three_prime_UTR	4033605	4033794	.	-	.	Parent=Os06t0181566-01
Chr06	irgsp1_rep	mRNA	4040784	4041763	.	+	.	ID=Os06t0181700-01;Name=Os06t0181700-01;Locus_id=Os06g0181700;RAP-DB Gene Symbol Synonym(s)=OsERF2;RAP-DB Gene Name Synonym(s)=ethylene responsive factor 2;CGSNL Gene Symbol=ERF2;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 2;Oryzabase Gene Symbol Synonym(s)=OsWR4%2C WR4%2C OsERF#002%2C OsERF002%2C ERF002%2C OsERF2%2C AP2/EREBP#100%2C AP2/EREBP100;Oryzabase Gene Name Synonym(s)=rice wax synthesis regulatory gene 4%2C wax synthesis regulator 4%2C ethylene response factor 2%2C APETALA2/ethylene-responsive element binding protein 100%2C ETHYLENE-RESPONSE-FACTOR002;Note=Ethylene responsive factor protein%2C Control of root architecture and ABA- and ethylene response;Transcript_evidence=AK108355;ORF_evidence=Q0DE28;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-binding transcription factor activity (GO:0003700);InterPro=AP2/ERF domain superfamily (IPR036955),DNA-binding domain superfamily (IPR016177),AP2/ERF transcription factor ERF/PTI6 (IPR017392),AP2/ERF domain (IPR001471);NIAS_FLcDNA=002-142-C04;Manual Curation=June 3%2C 2020;Literature_PMID=26659593;Oryzabase=10196;Expression=AK108355;TENOR=Os06t0181700-01;KEGG=Os06t0181700-01
Chr06	irgsp1_rep	five_prime_UTR	4040784	4040907	.	+	.	Parent=Os06t0181700-01
Chr06	irgsp1_rep	CDS	4040908	4040990	.	+	0	Parent=Os06t0181700-01
Chr06	irgsp1_rep	CDS	4041098	4041551	.	+	1	Parent=Os06t0181700-01
Chr06	irgsp1_rep	three_prime_UTR	4041552	4041763	.	+	.	Parent=Os06t0181700-01
Chr06	irgsp1_rep	mRNA	4051268	4052441	.	+	.	ID=Os06t0181800-00;Name=Os06t0181800-00;Locus_id=Os06g0181800;Note=Protein of unknown function DUF868%2C plant domain containing protein.;Transcript_evidence=AK362596 (DDBJ);ORF_evidence=Q5SMI1 (UniProt);InterPro=Protein of unknown function DUF868%2C plant (IPR008586);TENOR=Os06t0181800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	4051268	4052323	.	+	0	Parent=Os06t0181800-00
Chr06	irgsp1_rep	three_prime_UTR	4052324	4052441	.	+	.	Parent=Os06t0181800-00
Chr06	irgsp1_rep	mRNA	4053946	4056722	.	+	.	ID=Os06t0181900-01;Name=Os06t0181900-01;Locus_id=Os06g0181900;Note=Hypothetical protein.;Transcript_evidence=AK110822 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-171-H02;TENOR=Os06t0181900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	4053946	4054230	.	+	0	Parent=Os06t0181900-01
Chr06	irgsp1_rep	three_prime_UTR	4054231	4055525	.	+	.	Parent=Os06t0181900-01
Chr06	irgsp1_rep	three_prime_UTR	4055619	4055675	.	+	.	Parent=Os06t0181900-01
Chr06	irgsp1_rep	three_prime_UTR	4055827	4055926	.	+	.	Parent=Os06t0181900-01
Chr06	irgsp1_rep	three_prime_UTR	4056054	4056233	.	+	.	Parent=Os06t0181900-01
Chr06	irgsp1_rep	three_prime_UTR	4056509	4056722	.	+	.	Parent=Os06t0181900-01
Chr06	irgsp1_rep	mRNA	4053963	4055385	.	+	.	ID=Os06t0181900-02;Name=Os06t0181900-02;Locus_id=Os06g0181900;Note=Hypothetical protein.;Transcript_evidence=AK111463 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-183-D03;TENOR=Os06t0181900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	4053963	4053963	.	+	.	Parent=Os06t0181900-02
Chr06	irgsp1_rep	CDS	4053964	4054230	.	+	0	Parent=Os06t0181900-02
Chr06	irgsp1_rep	three_prime_UTR	4054231	4055385	.	+	.	Parent=Os06t0181900-02
Chr06	irgsp1_rep	mRNA	4062304	4063540	.	-	.	ID=Os06t0182100-00;Name=Os06t0182100-00;Locus_id=Os06g0182100;Note=Hypothetical conserved gene.;Transcript_evidence=CT836261 (DDBJ%2C Best hit);ORF_evidence=B8B3H7 (UniProt);InterPro=Domain of unknown function DUF862%2C eukaryotic (IPR008580);TENOR=Os06t0182100-00;KEGG=Os06t0182100-00
Chr06	irgsp1_rep	five_prime_UTR	4063329	4063540	.	-	.	Parent=Os06t0182100-00
Chr06	irgsp1_rep	CDS	4063109	4063328	.	-	0	Parent=Os06t0182100-00
Chr06	irgsp1_rep	CDS	4062531	4063018	.	-	2	Parent=Os06t0182100-00
Chr06	irgsp1_rep	CDS	4062444	4062524	.	-	0	Parent=Os06t0182100-00
Chr06	irgsp1_rep	three_prime_UTR	4062304	4062443	.	-	.	Parent=Os06t0182100-00
Chr06	irgsp1_rep	mRNA	4067116	4083811	.	-	.	ID=Os06t0182300-01;Name=Os06t0182300-01;Locus_id=Os06g0182300;RAP-DB Gene Symbol Synonym(s)=GSL5%2C OsGSL5;RAP-DB Gene Name Synonym(s)=BETA-1%2C3-GLUCANASE ACTIVITY 5%2C GLUCAN SYNTHASE-LIKE 5%2C Oryza sativa callose synthase 5;CGSNL Gene Symbol=GSL5;CGSNL Gene Name=BETA-1%2C3-GLUCANASE ACTIVITY 5;Oryzabase Gene Symbol Synonym(s)=OsGSL5%2C OsSTA170;Oryzabase Gene Name Synonym(s)=Oryza sativa callose synthase 5%2C callose synthase 5%2C Glucan Synthase-Like 5;Note=Callose synthase%2C Microsporogenesis%2C Male fertility;Transcript_evidence=AP007226,OSJNBb0036B04.3;ORF_evidence=Q5SMM3;GO=Biological Process: (1->3)-beta-D-glucan biosynthetic process (GO:0006075),Molecular Function: 1%2C3-beta-D-glucan synthase activity (GO:0003843),Cellular Component: 1%2C3-beta-D-glucan synthase complex (GO:0000148),Cellular Component: membrane (GO:0016020);InterPro=Glycosyl transferase%2C family 48 (IPR003440),Vacuolar protein sorting-associate protein Vta1/Callose synthase%2C N-terminal domain (IPR023175),1%2C3-beta-glucan synthase subunit FKS1-like%2C domain-1 (IPR026899);Manual Curation=March 27%2C 2015;Literature_PMID=25520407,16556979;Oryzabase=8540;TENOR=Os06t0182300-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	4083517	4083811	.	-	0	Parent=Os06t0182300-01
Chr06	irgsp1_rep	CDS	4082811	4082911	.	-	2	Parent=Os06t0182300-01
Chr06	irgsp1_rep	CDS	4081730	4081851	.	-	0	Parent=Os06t0182300-01
Chr06	irgsp1_rep	CDS	4081549	4081645	.	-	1	Parent=Os06t0182300-01
Chr06	irgsp1_rep	CDS	4081340	4081450	.	-	0	Parent=Os06t0182300-01
Chr06	irgsp1_rep	CDS	4081112	4081240	.	-	0	Parent=Os06t0182300-01
Chr06	irgsp1_rep	CDS	4080875	4081032	.	-	0	Parent=Os06t0182300-01
Chr06	irgsp1_rep	CDS	4080218	4080350	.	-	1	Parent=Os06t0182300-01
Chr06	irgsp1_rep	CDS	4079979	4080116	.	-	0	Parent=Os06t0182300-01
Chr06	irgsp1_rep	CDS	4079824	4079900	.	-	0	Parent=Os06t0182300-01
Chr06	irgsp1_rep	CDS	4079659	4079746	.	-	1	Parent=Os06t0182300-01
Chr06	irgsp1_rep	CDS	4079460	4079588	.	-	0	Parent=Os06t0182300-01
Chr06	irgsp1_rep	CDS	4079256	4079370	.	-	0	Parent=Os06t0182300-01
Chr06	irgsp1_rep	CDS	4078250	4078584	.	-	2	Parent=Os06t0182300-01
Chr06	irgsp1_rep	CDS	4077461	4077513	.	-	0	Parent=Os06t0182300-01
Chr06	irgsp1_rep	CDS	4077325	4077385	.	-	1	Parent=Os06t0182300-01
Chr06	irgsp1_rep	CDS	4077171	4077252	.	-	0	Parent=Os06t0182300-01
Chr06	irgsp1_rep	CDS	4077049	4077098	.	-	2	Parent=Os06t0182300-01
Chr06	irgsp1_rep	CDS	4076813	4076899	.	-	0	Parent=Os06t0182300-01
Chr06	irgsp1_rep	CDS	4075723	4075817	.	-	0	Parent=Os06t0182300-01
Chr06	irgsp1_rep	CDS	4075556	4075640	.	-	1	Parent=Os06t0182300-01
Chr06	irgsp1_rep	CDS	4075301	4075461	.	-	0	Parent=Os06t0182300-01
Chr06	irgsp1_rep	CDS	4074423	4074546	.	-	1	Parent=Os06t0182300-01
Chr06	irgsp1_rep	CDS	4074195	4074289	.	-	0	Parent=Os06t0182300-01
Chr06	irgsp1_rep	CDS	4073986	4074109	.	-	1	Parent=Os06t0182300-01
Chr06	irgsp1_rep	CDS	4073767	4073918	.	-	0	Parent=Os06t0182300-01
Chr06	irgsp1_rep	CDS	4072609	4072718	.	-	1	Parent=Os06t0182300-01
Chr06	irgsp1_rep	CDS	4072391	4072516	.	-	2	Parent=Os06t0182300-01
Chr06	irgsp1_rep	CDS	4072239	4072307	.	-	2	Parent=Os06t0182300-01
Chr06	irgsp1_rep	CDS	4071962	4072151	.	-	2	Parent=Os06t0182300-01
Chr06	irgsp1_rep	CDS	4071575	4071686	.	-	1	Parent=Os06t0182300-01
Chr06	irgsp1_rep	CDS	4071364	4071483	.	-	0	Parent=Os06t0182300-01
Chr06	irgsp1_rep	CDS	4071161	4071276	.	-	0	Parent=Os06t0182300-01
Chr06	irgsp1_rep	CDS	4070989	4071072	.	-	1	Parent=Os06t0182300-01
Chr06	irgsp1_rep	CDS	4070529	4070641	.	-	1	Parent=Os06t0182300-01
Chr06	irgsp1_rep	CDS	4070224	4070453	.	-	2	Parent=Os06t0182300-01
Chr06	irgsp1_rep	CDS	4069304	4070101	.	-	0	Parent=Os06t0182300-01
Chr06	irgsp1_rep	CDS	4069137	4069187	.	-	0	Parent=Os06t0182300-01
Chr06	irgsp1_rep	CDS	4068832	4069017	.	-	0	Parent=Os06t0182300-01
Chr06	irgsp1_rep	CDS	4067116	4067346	.	-	0	Parent=Os06t0182300-01
Chr06	irgsp1_rep	mRNA	4087894	4088366	.	+	.	ID=Os06t0182400-01;Name=Os06t0182400-01;Locus_id=Os06g0182400;Note=Hypothetical protein.;Transcript_evidence=AK109209 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-156-C12;TENOR=Os06t0182400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	4087894	4087895	.	+	.	Parent=Os06t0182400-01
Chr06	irgsp1_rep	CDS	4087896	4088294	.	+	0	Parent=Os06t0182400-01
Chr06	irgsp1_rep	three_prime_UTR	4088295	4088366	.	+	.	Parent=Os06t0182400-01
Chr06	irgsp1_rep	mRNA	4087970	4092106	.	+	.	ID=Os06t0182400-02;Name=Os06t0182400-02;Locus_id=Os06g0182400;Note=Metallophosphoesterase domain containing protein.;Transcript_evidence=AK068745 (DDBJ%2C Best hit);ORF_evidence=B9FRV1 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Metallophosphoesterase domain (IPR004843);NIAS_FLcDNA=J013164J17;Expression=AK068745;TENOR=Os06t0182400-02;KEGG=Os06t0182400-02
Chr06	irgsp1_rep	five_prime_UTR	4087970	4088112	.	+	.	Parent=Os06t0182400-02
Chr06	irgsp1_rep	CDS	4088113	4088169	.	+	0	Parent=Os06t0182400-02
Chr06	irgsp1_rep	CDS	4088981	4089031	.	+	0	Parent=Os06t0182400-02
Chr06	irgsp1_rep	CDS	4089334	4089355	.	+	0	Parent=Os06t0182400-02
Chr06	irgsp1_rep	CDS	4089470	4089584	.	+	2	Parent=Os06t0182400-02
Chr06	irgsp1_rep	CDS	4089679	4089711	.	+	1	Parent=Os06t0182400-02
Chr06	irgsp1_rep	CDS	4090220	4090345	.	+	1	Parent=Os06t0182400-02
Chr06	irgsp1_rep	CDS	4091225	4091331	.	+	1	Parent=Os06t0182400-02
Chr06	irgsp1_rep	CDS	4091421	4091492	.	+	2	Parent=Os06t0182400-02
Chr06	irgsp1_rep	CDS	4091567	4091961	.	+	2	Parent=Os06t0182400-02
Chr06	irgsp1_rep	three_prime_UTR	4091962	4092106	.	+	.	Parent=Os06t0182400-02
Chr06	irgsp1_rep	mRNA	4091389	4091960	.	-	.	ID=Os06t0182450-00;Name=Os06t0182450-00;Locus_id=Os06g0182450;Note=Hypothetical gene.;Transcript_evidence=EU946844 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0182450-00;KEGG=Os06t0182450-00
Chr06	irgsp1_rep	five_prime_UTR	4091743	4091960	.	-	.	Parent=Os06t0182450-00
Chr06	irgsp1_rep	CDS	4091479	4091742	.	-	0	Parent=Os06t0182450-00
Chr06	irgsp1_rep	three_prime_UTR	4091389	4091478	.	-	.	Parent=Os06t0182450-00
Chr06	irgsp1_rep	mRNA	4093231	4100861	.	+	.	ID=Os06t0182500-01;Name=Os06t0182500-01;Locus_id=Os06g0182500;RAP-DB Gene Symbol Synonym(s)=OsDA1;CGSNL Gene Symbol=DA1;Oryzabase Gene Symbol Synonym(s)=OsDA1;Note=Zinc finger%2C LIM-type domain containing protein%2C Homolog of the Arabidopsis DA1%2C High affinity to ubiquitin;Transcript_evidence=AK069056;ORF_evidence=Q5SMM0;InterPro=Protein DA1-like (IPR022087),Zinc finger%2C LIM-type (IPR001781),Ubiquitin interacting motif (IPR003903);NIAS_FLcDNA=J023004G21;Manual Curation=May 8%2C 2019;Literature_PMID=30796160;Oryzabase=22825;Expression=AK069056;TENOR=Os06t0182500-01;KEGG=Os06t0182500-01
Chr06	irgsp1_rep	five_prime_UTR	4093231	4093599	.	+	.	Parent=Os06t0182500-01
Chr06	irgsp1_rep	five_prime_UTR	4094090	4094127	.	+	.	Parent=Os06t0182500-01
Chr06	irgsp1_rep	CDS	4094128	4094247	.	+	0	Parent=Os06t0182500-01
Chr06	irgsp1_rep	CDS	4095480	4095570	.	+	0	Parent=Os06t0182500-01
Chr06	irgsp1_rep	CDS	4096319	4096472	.	+	2	Parent=Os06t0182500-01
Chr06	irgsp1_rep	CDS	4097440	4097560	.	+	1	Parent=Os06t0182500-01
Chr06	irgsp1_rep	CDS	4097651	4097734	.	+	0	Parent=Os06t0182500-01
Chr06	irgsp1_rep	CDS	4098129	4098248	.	+	0	Parent=Os06t0182500-01
Chr06	irgsp1_rep	CDS	4098364	4098576	.	+	0	Parent=Os06t0182500-01
Chr06	irgsp1_rep	CDS	4098665	4098727	.	+	0	Parent=Os06t0182500-01
Chr06	irgsp1_rep	CDS	4098851	4098966	.	+	0	Parent=Os06t0182500-01
Chr06	irgsp1_rep	CDS	4099315	4099373	.	+	1	Parent=Os06t0182500-01
Chr06	irgsp1_rep	CDS	4100309	4100628	.	+	2	Parent=Os06t0182500-01
Chr06	irgsp1_rep	three_prime_UTR	4100629	4100861	.	+	.	Parent=Os06t0182500-01
Chr06	irgsp1_rep	mRNA	4093312	4100863	.	+	.	ID=Os06t0182500-02;Name=Os06t0182500-02;Locus_id=Os06g0182500;CGSNL Gene Symbol=DA1;Oryzabase Gene Symbol Synonym(s)=OsDA1;Note=Zinc finger%2C LIM-type domain containing protein.;Transcript_evidence=AK105719 (DDBJ%2C Best hit);ORF_evidence=XP_002436606.1 (RefSeq);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C LIM-type (IPR001781),Ubiquitin interacting motif (IPR003903),Protein of unknown function DUF3633 (IPR022087);NIAS_FLcDNA=001-201-F10;Oryzabase=22825;Expression=AK105719;TENOR=Os06t0182500-02;KEGG=Os06t0182500-02
Chr06	irgsp1_rep	five_prime_UTR	4093312	4093998	.	+	.	Parent=Os06t0182500-02
Chr06	irgsp1_rep	five_prime_UTR	4094090	4094127	.	+	.	Parent=Os06t0182500-02
Chr06	irgsp1_rep	CDS	4094128	4094247	.	+	0	Parent=Os06t0182500-02
Chr06	irgsp1_rep	CDS	4095480	4095570	.	+	0	Parent=Os06t0182500-02
Chr06	irgsp1_rep	CDS	4096319	4096472	.	+	2	Parent=Os06t0182500-02
Chr06	irgsp1_rep	CDS	4097440	4097560	.	+	1	Parent=Os06t0182500-02
Chr06	irgsp1_rep	CDS	4097651	4097734	.	+	0	Parent=Os06t0182500-02
Chr06	irgsp1_rep	CDS	4098129	4098248	.	+	0	Parent=Os06t0182500-02
Chr06	irgsp1_rep	CDS	4098364	4098576	.	+	0	Parent=Os06t0182500-02
Chr06	irgsp1_rep	CDS	4098665	4098727	.	+	0	Parent=Os06t0182500-02
Chr06	irgsp1_rep	CDS	4098851	4098966	.	+	0	Parent=Os06t0182500-02
Chr06	irgsp1_rep	CDS	4099315	4099373	.	+	1	Parent=Os06t0182500-02
Chr06	irgsp1_rep	CDS	4100309	4100628	.	+	2	Parent=Os06t0182500-02
Chr06	irgsp1_rep	three_prime_UTR	4100629	4100863	.	+	.	Parent=Os06t0182500-02
Chr06	irgsp1_rep	mRNA	4095430	4100628	.	-	.	ID=Os06t0182800-00;Name=Os06t0182800-00;Locus_id=Os06g0182800;Note=Non-protein coding transcript.;Transcript_evidence=tplb0034a09 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os06t0182800-00
Chr06	irgsp1_rep	exon	4100278	4100628	.	-	.	Parent=Os06t0182800-00
Chr06	irgsp1_rep	exon	4099324	4099386	.	-	.	Parent=Os06t0182800-00
Chr06	irgsp1_rep	exon	4098864	4098974	.	-	.	Parent=Os06t0182800-00
Chr06	irgsp1_rep	exon	4098662	4098739	.	-	.	Parent=Os06t0182800-00
Chr06	irgsp1_rep	exon	4098362	4098574	.	-	.	Parent=Os06t0182800-00
Chr06	irgsp1_rep	exon	4098137	4098246	.	-	.	Parent=Os06t0182800-00
Chr06	irgsp1_rep	exon	4097644	4097744	.	-	.	Parent=Os06t0182800-00
Chr06	irgsp1_rep	exon	4097426	4097567	.	-	.	Parent=Os06t0182800-00
Chr06	irgsp1_rep	exon	4096327	4096462	.	-	.	Parent=Os06t0182800-00
Chr06	irgsp1_rep	exon	4095430	4095583	.	-	.	Parent=Os06t0182800-00
Chr06	irgsp1_rep	mRNA	4137248	4142530	.	+	.	ID=Os06t0183100-01;Name=Os06t0183100-01;Locus_id=Os06g0183100;RAP-DB Gene Symbol Synonym(s)=RR22%2C OsRR22%2C Rrb4%2C Orr2%2C OsRR20%2C OsRRB4%2C HST1;RAP-DB Gene Name Synonym(s)=B-TYPE RESPONSE REGULATOR 2%2C B-type response regulator 2%2C B-type RR 4%2C hitomebore salt tolerant 1;CGSNL Gene Symbol=HST1;CGSNL Gene Name=HITOMEBORE SALT TOLERANT 1;Oryzabase Gene Symbol Synonym(s)=RR22%2C OsRR22%2C Rrb4%2C Orr2%2C OsRR20%2C OsRRB4%2C OsHST1;Oryzabase Gene Name Synonym(s)=B-type response regulator 2%2C B-type RR 4%2C hitomebore salt tolerant 1;Note=B-type response regulator%2C Cytokinin signaling;Transcript_evidence=AK102959 (Genbank),BR000251 (Genbank);ORF_evidence=Q5SML5 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: two-component response regulator activity (GO:0000156),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),CheY-like superfamily (IPR011006),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Response regulator%2C plant B-type (IPR017053),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J033115H14;Manual Curation=October 24%2C 2019;Literature_PMID=25798936,17293362,16919402;Oryzabase=8149;Expression=AK102959;TENOR=Os06t0183100-01;KEGG=Os06t0183100-01
Chr06	irgsp1_rep	five_prime_UTR	4137248	4138130	.	+	.	Parent=Os06t0183100-01
Chr06	irgsp1_rep	CDS	4138131	4138284	.	+	0	Parent=Os06t0183100-01
Chr06	irgsp1_rep	CDS	4138577	4138729	.	+	2	Parent=Os06t0183100-01
Chr06	irgsp1_rep	CDS	4138865	4139278	.	+	2	Parent=Os06t0183100-01
Chr06	irgsp1_rep	CDS	4139401	4139477	.	+	2	Parent=Os06t0183100-01
Chr06	irgsp1_rep	CDS	4140662	4141882	.	+	0	Parent=Os06t0183100-01
Chr06	irgsp1_rep	CDS	4142240	4142311	.	+	0	Parent=Os06t0183100-01
Chr06	irgsp1_rep	three_prime_UTR	4142312	4142530	.	+	.	Parent=Os06t0183100-01
Chr06	irgsp1_rep	mRNA	4137852	4142661	.	+	.	ID=Os06t0183100-02;Name=Os06t0183100-02;Locus_id=Os06g0183100;RAP-DB Gene Symbol Synonym(s)=ORR2%2C ORR2%2C B-type RR;RAP-DB Gene Name Synonym(s)=B-TYPE RESPONSE REGULATOR 2%2C B-type response regulator 2;CGSNL Gene Symbol=HST1;CGSNL Gene Name=HITOMEBORE SALT TOLERANT 1;Oryzabase Gene Symbol Synonym(s)=RR22%2C OsRR22%2C Rrb4%2C Orr2%2C OsRR20%2C OsRRB4%2C OsHST1;Oryzabase Gene Name Synonym(s)=B-type response regulator 2%2C B-type RR 4%2C hitomebore salt tolerant 1;Note=B-type response regulator%2C Cytokinin signaling;Transcript_evidence=AK101165 (Genbank),AK073624 (Genbank);ORF_evidence=Q5SML5 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: two-component response regulator activity (GO:0000156),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),CheY-like superfamily (IPR011006),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Response regulator%2C plant B-type (IPR017053),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J033028D10,J033048G07;Manual Curation=May 20%2C 2010;Literature_PMID=16919402,17293362;Oryzabase=8149;TENOR=Os06t0183100-02
Chr06	irgsp1_rep	five_prime_UTR	4137852	4138130	.	+	.	Parent=Os06t0183100-02
Chr06	irgsp1_rep	CDS	4138131	4138284	.	+	0	Parent=Os06t0183100-02
Chr06	irgsp1_rep	CDS	4138577	4138729	.	+	2	Parent=Os06t0183100-02
Chr06	irgsp1_rep	CDS	4138865	4139278	.	+	2	Parent=Os06t0183100-02
Chr06	irgsp1_rep	CDS	4139401	4139477	.	+	2	Parent=Os06t0183100-02
Chr06	irgsp1_rep	CDS	4140662	4141882	.	+	0	Parent=Os06t0183100-02
Chr06	irgsp1_rep	CDS	4142240	4142311	.	+	0	Parent=Os06t0183100-02
Chr06	irgsp1_rep	three_prime_UTR	4142312	4142661	.	+	.	Parent=Os06t0183100-02
Chr06	irgsp1_rep	mRNA	4142851	4150976	.	-	.	ID=Os06t0183200-01;Name=Os06t0183200-01;Locus_id=Os06g0183200;RAP-DB Gene Symbol Synonym(s)=HK2%2C OHK1%2C HK%2C OsHK2%2C Ohk1;RAP-DB Gene Name Synonym(s)=HISTIDINE KINASE 1%2C histidine kinase 1;CGSNL Gene Symbol=HK2;CGSNL Gene Name=HISTIDINE KINASE 1;Oryzabase Gene Symbol Synonym(s)=OHK1%2C HK%2C OsHK2%2C Ohk1;Oryzabase Gene Name Synonym(s)=histidine kinase 1;Note=Histidine kinase%2C Cytokinin signaling;Transcript_evidence=BR000243;ORF_evidence=Q5SML4;GO=Biological Process: phosphorelay signal transduction system (GO:0000160),Biological Process: signal transduction (GO:0007165),Biological Process: phosphorylation (GO:0016310),Molecular Function: phosphorelay sensor kinase activity (GO:0000155),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772),Cellular Component: membrane (GO:0016020);InterPro=Signal transduction histidine kinase%2C homodimeric domain (IPR009082),Signal transduction histidine kinase EnvZ-like%2C dimerisation/phosphoacceptor domain (IPR003661),Signal transduction histidine kinase%2C core (IPR005467),Histidine kinase-like ATPase%2C C-terminal domain (IPR003594),Signal transduction histidine kinase-related protein%2C C-terminal (IPR004358),CheY-like superfamily (IPR011006),Signal transduction response regulator%2C receiver domain (IPR001789);Manual Curation=March 25%2C 2010;Literature_PMID=16919402,17293362,22383541;Oryzabase=8141;TENOR=Os06t0183200-00
Chr06	irgsp1_rep	CDS	4150908	4150976	.	-	0	Parent=Os06t0183200-01
Chr06	irgsp1_rep	CDS	4150191	4150406	.	-	0	Parent=Os06t0183200-01
Chr06	irgsp1_rep	CDS	4149108	4149773	.	-	0	Parent=Os06t0183200-01
Chr06	irgsp1_rep	CDS	4147640	4148009	.	-	0	Parent=Os06t0183200-01
Chr06	irgsp1_rep	CDS	4144901	4145475	.	-	2	Parent=Os06t0183200-01
Chr06	irgsp1_rep	CDS	4143253	4144287	.	-	0	Parent=Os06t0183200-01
Chr06	irgsp1_rep	CDS	4142851	4143066	.	-	0	Parent=Os06t0183200-01
Chr06	irgsp1_rep	mRNA	4161337	4162797	.	+	.	ID=Os06t0183600-00;Name=Os06t0183600-00;Locus_id=Os06g0183600;CGSNL Gene Symbol=EXO70FX9;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX9;Oryzabase Gene Symbol Synonym(s)=OsEXO70FX9%2C OsExo70FX9%2C OrysaFX9_Exo70;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein FX9;Note=Exo70 exocyst complex subunit domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5SML2 (UniProt);GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exo70 exocyst complex subunit (IPR004140),Cullin repeat-like-containing domain (IPR016159);Oryzabase=20351;TENOR=Os06t0183600-00
Chr06	irgsp1_rep	CDS	4161337	4162797	.	+	0	Parent=Os06t0183600-00
Chr06	irgsp1_rep	mRNA	4163024	4166971	.	-	.	ID=Os06t0183700-01;Name=Os06t0183700-01;Locus_id=Os06g0183700;Note=Hypothetical conserved gene.;Transcript_evidence=AK241983 (DDBJ%2C Best hit);ORF_evidence=A2YA17 (UniProt);NIAS_FLcDNA=J075097N07;TENOR=Os06t0183700-01;KEGG=Os06t0183700-01
Chr06	irgsp1_rep	five_prime_UTR	4166943	4166971	.	-	.	Parent=Os06t0183700-01
Chr06	irgsp1_rep	CDS	4166691	4166942	.	-	0	Parent=Os06t0183700-01
Chr06	irgsp1_rep	CDS	4165519	4165602	.	-	0	Parent=Os06t0183700-01
Chr06	irgsp1_rep	CDS	4165217	4165251	.	-	0	Parent=Os06t0183700-01
Chr06	irgsp1_rep	CDS	4164753	4164864	.	-	1	Parent=Os06t0183700-01
Chr06	irgsp1_rep	CDS	4164040	4164128	.	-	0	Parent=Os06t0183700-01
Chr06	irgsp1_rep	CDS	4163630	4163738	.	-	1	Parent=Os06t0183700-01
Chr06	irgsp1_rep	CDS	4163398	4163535	.	-	0	Parent=Os06t0183700-01
Chr06	irgsp1_rep	CDS	4163220	4163297	.	-	0	Parent=Os06t0183700-01
Chr06	irgsp1_rep	three_prime_UTR	4163024	4163219	.	-	.	Parent=Os06t0183700-01
Chr06	irgsp1_rep	mRNA	4161234	4163642	.	-	.	ID=Os06t0183700-02;Name=Os06t0183700-02;Locus_id=Os06g0183700;Note=Conserved hypothetical protein.;Transcript_evidence=AK287613 (DDBJ%2C Best hit);ORF_evidence=B9FRV3 (UniProt);NIAS_FLcDNA=J065062B08;TENOR=Os06t0183700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	4163545	4163642	.	-	.	Parent=Os06t0183700-02
Chr06	irgsp1_rep	CDS	4163260	4163544	.	-	0	Parent=Os06t0183700-02
Chr06	irgsp1_rep	three_prime_UTR	4161234	4163259	.	-	.	Parent=Os06t0183700-02
Chr06	irgsp1_rep	mRNA	4167296	4174105	.	-	.	ID=Os06t0183800-01;Name=Os06t0183800-01;Locus_id=Os06g0183800;CGSNL Gene Symbol=PKL;CGSNL Gene Name=PICKLE;Oryzabase Gene Symbol Synonym(s)=CHR702%2C Chr702%2C OsCHR702;Oryzabase Gene Name Synonym(s)=CHD-related gene 702;Note=Similar to Chromatin-remodeling factor CHD3.;Transcript_evidence=AK065390 (DDBJ%2C Best hit);ORF_evidence=Q6YNJ6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Homeodomain-like (IPR009057),Domain of unknown function DUF1086 (IPR009462);NIAS_FLcDNA=J013023A02;Oryzabase=10416;Expression=AK065390;TENOR=Os06t0183800-01;KEGG=Os06t0183800-01 (EC:3.6.1.-)
Chr06	irgsp1_rep	CDS	4174021	4174105	.	-	0	Parent=Os06t0183800-01
Chr06	irgsp1_rep	CDS	4173841	4173943	.	-	2	Parent=Os06t0183800-01
Chr06	irgsp1_rep	CDS	4172318	4172392	.	-	1	Parent=Os06t0183800-01
Chr06	irgsp1_rep	CDS	4171863	4171924	.	-	1	Parent=Os06t0183800-01
Chr06	irgsp1_rep	CDS	4171711	4171784	.	-	2	Parent=Os06t0183800-01
Chr06	irgsp1_rep	CDS	4171489	4171619	.	-	0	Parent=Os06t0183800-01
Chr06	irgsp1_rep	CDS	4170013	4170142	.	-	1	Parent=Os06t0183800-01
Chr06	irgsp1_rep	CDS	4169775	4169915	.	-	0	Parent=Os06t0183800-01
Chr06	irgsp1_rep	CDS	4169544	4169664	.	-	0	Parent=Os06t0183800-01
Chr06	irgsp1_rep	CDS	4168037	4168098	.	-	2	Parent=Os06t0183800-01
Chr06	irgsp1_rep	CDS	4167574	4167915	.	-	0	Parent=Os06t0183800-01
Chr06	irgsp1_rep	three_prime_UTR	4167296	4167573	.	-	.	Parent=Os06t0183800-01
Chr06	irgsp1_rep	mRNA	4189161	4190563	.	-	.	ID=Os06t0183900-01;Name=Os06t0183900-01;Locus_id=Os06g0183900;Note=Protein of unknown function DUF602 family protein.;Transcript_evidence=AK109370 (DDBJ%2C Best hit),AK102112 (DDBJ%2C Best hit);ORF_evidence=A2YA19 (UniProt);InterPro=Protein of unknown function DUF602 (IPR006735);NIAS_FLcDNA=006-207-D12,J033084G03;Expression=AK109370;TENOR=Os06t0183900-01;KEGG=Os06t0183900-01
Chr06	irgsp1_rep	five_prime_UTR	4190466	4190563	.	-	.	Parent=Os06t0183900-01
Chr06	irgsp1_rep	CDS	4189413	4190465	.	-	0	Parent=Os06t0183900-01
Chr06	irgsp1_rep	three_prime_UTR	4189161	4189412	.	-	.	Parent=Os06t0183900-01
Chr06	irgsp1_rep	mRNA	4192056	4194484	.	-	.	ID=Os06t0184000-01;Name=Os06t0184000-01;Locus_id=Os06g0184000;RAP-DB Gene Symbol Synonym(s)=OsRHL1;RAP-DB Gene Name Synonym(s)=Root Hairless1;CGSNL Gene Symbol=RHL1;CGSNL Gene Name=ROOTHAIRLESS1;Oryzabase Gene Symbol Synonym(s)=OsbHLH115%2C bHLH115%2C OsRHL1;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 115%2C ROOTHAIRLESS 1;Note=Basic helix-loop-helix (bHLH) transcription factor%2C Regulation of root hair development;Transcript_evidence=XM_015787493;ORF_evidence=Q5SMP1;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Helix-loop-helix DNA-binding domain superfamily (IPR036638),Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);Manual Curation=September 2%2C 2019;Literature_PMID=30545904,19752888;Oryzabase=15395;TENOR=Os06t0184000-00;Subcellular location=cytoplasm (GO:0005737) [mainly], nucleus (GO:0005634)
Chr06	irgsp1_rep	five_prime_UTR	4194417	4194484	.	-	.	Parent=Os06t0184000-01
Chr06	irgsp1_rep	CDS	4193994	4194416	.	-	0	Parent=Os06t0184000-01
Chr06	irgsp1_rep	CDS	4193825	4193902	.	-	0	Parent=Os06t0184000-01
Chr06	irgsp1_rep	CDS	4193580	4193738	.	-	0	Parent=Os06t0184000-01
Chr06	irgsp1_rep	CDS	4193189	4193254	.	-	0	Parent=Os06t0184000-01
Chr06	irgsp1_rep	CDS	4192864	4192929	.	-	0	Parent=Os06t0184000-01
Chr06	irgsp1_rep	CDS	4192710	4192778	.	-	0	Parent=Os06t0184000-01
Chr06	irgsp1_rep	CDS	4192207	4192608	.	-	0	Parent=Os06t0184000-01
Chr06	irgsp1_rep	three_prime_UTR	4192056	4192206	.	-	.	Parent=Os06t0184000-01
Chr06	irgsp1_rep	mRNA	4201250	4202851	.	-	.	ID=Os06t0184100-01;Name=Os06t0184100-01;Locus_id=Os06g0184100;CGSNL Gene Symbol=DPL2;CGSNL Gene Name=DOPPELGANGER 2;Oryzabase Gene Name Synonym(s)=DOPPELGANGER2;Note=Conserved hypothetical protein.;Transcript_evidence=AK064179 (DDBJ%2C Best hit);ORF_evidence=B8B3I7 (UniProt);NIAS_FLcDNA=002-104-B04;Oryzabase=8860;Expression=AK064179;TENOR=Os06t0184100-01;KEGG=Os06t0184100-01
Chr06	irgsp1_rep	five_prime_UTR	4202609	4202851	.	-	.	Parent=Os06t0184100-01
Chr06	irgsp1_rep	five_prime_UTR	4201661	4201671	.	-	.	Parent=Os06t0184100-01
Chr06	irgsp1_rep	CDS	4201325	4201660	.	-	0	Parent=Os06t0184100-01
Chr06	irgsp1_rep	three_prime_UTR	4201250	4201324	.	-	.	Parent=Os06t0184100-01
Chr06	irgsp1_rep	mRNA	4205532	4207141	.	-	.	ID=Os06t0184200-00;Name=Os06t0184200-00;Locus_id=Os06g0184200;Note=Hypothetical conserved gene.;Transcript_evidence=EU971433 (DDBJ);ORF_evidence=NP_001056991.2 (RefSeq);TENOR=Os06t0184200-00;KEGG=Os06t0184200-00
Chr06	irgsp1_rep	CDS	4206647	4207141	.	-	0	Parent=Os06t0184200-00
Chr06	irgsp1_rep	CDS	4206050	4206514	.	-	0	Parent=Os06t0184200-00
Chr06	irgsp1_rep	CDS	4205532	4205954	.	-	0	Parent=Os06t0184200-00
Chr06	irgsp1_rep	mRNA	4213294	4218300	.	-	.	ID=Os06t0184300-01;Name=Os06t0184300-01;Locus_id=Os06g0184300;Oryzabase Gene Symbol Synonym(s)=OsBIP110%2C BIP110%2C OsUBP7-4%2C UBP7-4%2C OsUBP28%2C UBP28;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 110%2C BRI1-interacting protein 110%2C brassinosteroid receptor kinase-interacting protein 110%2C ubiquitin-specific processing protease 7-4;Note=Similar to Ubiquitin carboxyl-terminal hydrolase.;Transcript_evidence=AK102933 (DDBJ%2C Best hit);ORF_evidence=B9FRW0 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Molecular Function: ubiquitin thiolesterase activity (GO:0004221);InterPro=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (IPR001394),Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2%2C conserved site (IPR018200);NIAS_FLcDNA=J033114H16;Oryzabase=13681;TENOR=Os06t0184300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	4218300	4218300	.	-	.	Parent=Os06t0184300-01
Chr06	irgsp1_rep	CDS	4218054	4218299	.	-	0	Parent=Os06t0184300-01
Chr06	irgsp1_rep	CDS	4217652	4217766	.	-	0	Parent=Os06t0184300-01
Chr06	irgsp1_rep	CDS	4216829	4216939	.	-	2	Parent=Os06t0184300-01
Chr06	irgsp1_rep	CDS	4216549	4216721	.	-	2	Parent=Os06t0184300-01
Chr06	irgsp1_rep	CDS	4216123	4216449	.	-	0	Parent=Os06t0184300-01
Chr06	irgsp1_rep	CDS	4215911	4216036	.	-	0	Parent=Os06t0184300-01
Chr06	irgsp1_rep	CDS	4215002	4215670	.	-	0	Parent=Os06t0184300-01
Chr06	irgsp1_rep	CDS	4214792	4214917	.	-	0	Parent=Os06t0184300-01
Chr06	irgsp1_rep	CDS	4214055	4214673	.	-	0	Parent=Os06t0184300-01
Chr06	irgsp1_rep	CDS	4213857	4213950	.	-	2	Parent=Os06t0184300-01
Chr06	irgsp1_rep	CDS	4213531	4213699	.	-	1	Parent=Os06t0184300-01
Chr06	irgsp1_rep	three_prime_UTR	4213294	4213530	.	-	.	Parent=Os06t0184300-01
Chr06	irgsp1_rep	mRNA	4213294	4216913	.	-	.	ID=Os06t0184300-02;Name=Os06t0184300-02;Locus_id=Os06g0184300;Oryzabase Gene Symbol Synonym(s)=OsBIP110%2C BIP110%2C OsUBP7-4%2C UBP7-4%2C OsUBP28%2C UBP28;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 110%2C BRI1-interacting protein 110%2C brassinosteroid receptor kinase-interacting protein 110%2C ubiquitin-specific processing protease 7-4;Note=Similar to Ubiquitin carboxyl-terminal hydrolase.;Transcript_evidence=AK073840 (DDBJ%2C Best hit);ORF_evidence=B9FRW0 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Molecular Function: ubiquitin thiolesterase activity (GO:0004221);InterPro=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (IPR001394),Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2%2C conserved site (IPR018200);NIAS_FLcDNA=J033069H15;Oryzabase=13681;Expression=AK073840;TENOR=Os06t0184300-02;KEGG=Os06t0184300-02 (EC:3.1.2.15)
Chr06	irgsp1_rep	CDS	4216829	4216913	.	-	0	Parent=Os06t0184300-02
Chr06	irgsp1_rep	CDS	4216549	4216721	.	-	2	Parent=Os06t0184300-02
Chr06	irgsp1_rep	CDS	4216123	4216449	.	-	0	Parent=Os06t0184300-02
Chr06	irgsp1_rep	CDS	4215911	4216036	.	-	0	Parent=Os06t0184300-02
Chr06	irgsp1_rep	CDS	4215251	4215670	.	-	0	Parent=Os06t0184300-02
Chr06	irgsp1_rep	CDS	4215002	4215175	.	-	0	Parent=Os06t0184300-02
Chr06	irgsp1_rep	CDS	4214792	4214917	.	-	0	Parent=Os06t0184300-02
Chr06	irgsp1_rep	CDS	4214055	4214673	.	-	0	Parent=Os06t0184300-02
Chr06	irgsp1_rep	CDS	4213857	4213950	.	-	2	Parent=Os06t0184300-02
Chr06	irgsp1_rep	CDS	4213531	4213699	.	-	1	Parent=Os06t0184300-02
Chr06	irgsp1_rep	three_prime_UTR	4213294	4213530	.	-	.	Parent=Os06t0184300-02
Chr06	irgsp1_rep	mRNA	4213272	4215311	.	-	.	ID=Os06t0184300-03;Name=Os06t0184300-03;Locus_id=Os06g0184300;Oryzabase Gene Symbol Synonym(s)=OsBIP110%2C BIP110%2C OsUBP7-4%2C UBP7-4%2C OsUBP28%2C UBP28;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 110%2C BRI1-interacting protein 110%2C brassinosteroid receptor kinase-interacting protein 110%2C ubiquitin-specific processing protease 7-4;Note=Similar to Ubiquitin carboxyl-terminal hydrolase (Fragment).;Transcript_evidence=AK061673 (DDBJ%2C Best hit);ORF_evidence=Q84P80 (UniProt);NIAS_FLcDNA=001-036-G09;Oryzabase=13681;Expression=AK061673;TENOR=Os06t0184300-03;KEGG=Os06t0184300-03 (EC:3.1.2.15)
Chr06	irgsp1_rep	five_prime_UTR	4215311	4215311	.	-	.	Parent=Os06t0184300-03
Chr06	irgsp1_rep	CDS	4215002	4215310	.	-	0	Parent=Os06t0184300-03
Chr06	irgsp1_rep	CDS	4214792	4214917	.	-	0	Parent=Os06t0184300-03
Chr06	irgsp1_rep	CDS	4214055	4214673	.	-	0	Parent=Os06t0184300-03
Chr06	irgsp1_rep	CDS	4213857	4213950	.	-	2	Parent=Os06t0184300-03
Chr06	irgsp1_rep	CDS	4213531	4213699	.	-	1	Parent=Os06t0184300-03
Chr06	irgsp1_rep	three_prime_UTR	4213272	4213530	.	-	.	Parent=Os06t0184300-03
Chr06	irgsp1_rep	mRNA	4224345	4228004	.	+	.	ID=Os06t0184400-00;Name=Os06t0184400-00;Locus_id=Os06g0184400;Note=Similar to predicted protein.;Transcript_evidence=CT836329 (DDBJ%2C Best hit);ORF_evidence=NP_001056993.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium/lipid-binding domain%2C CaLB (IPR008973),Tensin phosphatase%2C C2 domain (IPR014020);TENOR=Os06t0184400-00;KEGG=Os06t0184400-00
Chr06	irgsp1_rep	five_prime_UTR	4224345	4224543	.	+	.	Parent=Os06t0184400-00
Chr06	irgsp1_rep	CDS	4224544	4224616	.	+	0	Parent=Os06t0184400-00
Chr06	irgsp1_rep	CDS	4225667	4226370	.	+	2	Parent=Os06t0184400-00
Chr06	irgsp1_rep	CDS	4226767	4227051	.	+	0	Parent=Os06t0184400-00
Chr06	irgsp1_rep	three_prime_UTR	4227052	4228004	.	+	.	Parent=Os06t0184400-00
Chr06	irgsp1_rep	mRNA	4229401	4233324	.	-	.	ID=Os06t0184500-01;Name=Os06t0184500-01;Locus_id=Os06g0184500;RAP-DB Gene Symbol Synonym(s)=OsNPY2;RAP-DB Gene Name Synonym(s)=NAKED PINS IN YUC MUTANTS 2;CGSNL Gene Symbol=NPY2;CGSNL Gene Name=NAKED PINS IN YUC MUTANT 2;Oryzabase Gene Symbol Synonym(s)=OsNPY2;Note=A member of the NPY gene family%2C Inflorescence development;Transcript_evidence=AK454482 (Wheat);ORF_evidence=Q5SMN3;GO=Molecular Function: protein binding (GO:0005515);InterPro=SKP1/BTB/POZ domain superfamily (IPR011333),BTB/POZ domain (IPR000210),NPH3 domain (IPR027356);Manual Curation=May 14%2C 2019;Literature_PMID=30918083;Oryzabase=22831;TENOR=Os06t0184500-00;KEGG=Os06t0184500-00
Chr06	irgsp1_rep	five_prime_UTR	4232987	4233324	.	-	.	Parent=Os06t0184500-01
Chr06	irgsp1_rep	CDS	4232922	4232986	.	-	0	Parent=Os06t0184500-01
Chr06	irgsp1_rep	CDS	4231874	4231943	.	-	1	Parent=Os06t0184500-01
Chr06	irgsp1_rep	CDS	4230246	4231421	.	-	0	Parent=Os06t0184500-01
Chr06	irgsp1_rep	CDS	4229443	4230066	.	-	0	Parent=Os06t0184500-01
Chr06	irgsp1_rep	three_prime_UTR	4229401	4229442	.	-	.	Parent=Os06t0184500-01
Chr06	irgsp1_rep	mRNA	4248735	4249302	.	+	.	ID=Os06t0184600-01;Name=Os06t0184600-01;Locus_id=Os06g0184600;Note=Conserved hypothetical protein.;Transcript_evidence=AK109202 (DDBJ%2C Best hit);ORF_evidence=NP_001044642.1 (RefSeq);NIAS_FLcDNA=002-156-C04;Expression=AK109202;TENOR=Os06t0184600-01;KEGG=Os06t0184600-01
Chr06	irgsp1_rep	five_prime_UTR	4248735	4248914	.	+	.	Parent=Os06t0184600-01
Chr06	irgsp1_rep	CDS	4248915	4249232	.	+	0	Parent=Os06t0184600-01
Chr06	irgsp1_rep	three_prime_UTR	4249233	4249302	.	+	.	Parent=Os06t0184600-01
Chr06	irgsp1_rep	mRNA	4250861	4259977	.	+	.	ID=Os06t0184700-00;Name=Os06t0184700-00;Locus_id=Os06g0184700;CGSNL Gene Symbol=MRP12;CGSNL Gene Name=MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 12;Oryzabase Gene Symbol Synonym(s)=OsABCC12%2C OsMRP12;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCC subgroup member 12%2C multidrug resistance-associated protein 12;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FRW1 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C conserved site (IPR017871);Oryzabase=11963;TENOR=Os06t0184700-00;KEGG=Os06t0184700-00 (EC:3.6.3.44)
Chr06	irgsp1_rep	CDS	4250861	4250890	.	+	0	Parent=Os06t0184700-00
Chr06	irgsp1_rep	CDS	4251020	4251116	.	+	0	Parent=Os06t0184700-00
Chr06	irgsp1_rep	CDS	4252392	4252498	.	+	2	Parent=Os06t0184700-00
Chr06	irgsp1_rep	CDS	4252599	4252727	.	+	0	Parent=Os06t0184700-00
Chr06	irgsp1_rep	CDS	4252941	4253041	.	+	0	Parent=Os06t0184700-00
Chr06	irgsp1_rep	CDS	4253710	4253779	.	+	1	Parent=Os06t0184700-00
Chr06	irgsp1_rep	CDS	4254263	4254514	.	+	0	Parent=Os06t0184700-00
Chr06	irgsp1_rep	CDS	4258026	4258106	.	+	0	Parent=Os06t0184700-00
Chr06	irgsp1_rep	CDS	4258205	4258450	.	+	0	Parent=Os06t0184700-00
Chr06	irgsp1_rep	CDS	4258853	4258954	.	+	0	Parent=Os06t0184700-00
Chr06	irgsp1_rep	CDS	4258994	4259097	.	+	0	Parent=Os06t0184700-00
Chr06	irgsp1_rep	CDS	4259223	4259354	.	+	1	Parent=Os06t0184700-00
Chr06	irgsp1_rep	CDS	4259466	4259613	.	+	1	Parent=Os06t0184700-00
Chr06	irgsp1_rep	CDS	4259687	4259977	.	+	0	Parent=Os06t0184700-00
Chr06	irgsp1_rep	mRNA	4257905	4264332	.	-	.	ID=Os06t0184733-01;Name=Os06t0184733-01;Locus_id=Os06g0184733;Note=Hypothetical gene.;Transcript_evidence=AK242277 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J075187L21;TENOR=Os06t0184733-01
Chr06	irgsp1_rep	five_prime_UTR	4264015	4264332	.	-	.	Parent=Os06t0184733-01
Chr06	irgsp1_rep	five_prime_UTR	4263480	4263647	.	-	.	Parent=Os06t0184733-01
Chr06	irgsp1_rep	five_prime_UTR	4263131	4263320	.	-	.	Parent=Os06t0184733-01
Chr06	irgsp1_rep	five_prime_UTR	4262810	4262997	.	-	.	Parent=Os06t0184733-01
Chr06	irgsp1_rep	five_prime_UTR	4262500	4262661	.	-	.	Parent=Os06t0184733-01
Chr06	irgsp1_rep	five_prime_UTR	4262317	4262427	.	-	.	Parent=Os06t0184733-01
Chr06	irgsp1_rep	five_prime_UTR	4262136	4262228	.	-	.	Parent=Os06t0184733-01
Chr06	irgsp1_rep	five_prime_UTR	4261925	4262023	.	-	.	Parent=Os06t0184733-01
Chr06	irgsp1_rep	five_prime_UTR	4261653	4261775	.	-	.	Parent=Os06t0184733-01
Chr06	irgsp1_rep	five_prime_UTR	4260797	4260850	.	-	.	Parent=Os06t0184733-01
Chr06	irgsp1_rep	five_prime_UTR	4260590	4260701	.	-	.	Parent=Os06t0184733-01
Chr06	irgsp1_rep	five_prime_UTR	4260339	4260514	.	-	.	Parent=Os06t0184733-01
Chr06	irgsp1_rep	five_prime_UTR	4260103	4260250	.	-	.	Parent=Os06t0184733-01
Chr06	irgsp1_rep	five_prime_UTR	4259687	4259973	.	-	.	Parent=Os06t0184733-01
Chr06	irgsp1_rep	five_prime_UTR	4259466	4259613	.	-	.	Parent=Os06t0184733-01
Chr06	irgsp1_rep	five_prime_UTR	4259223	4259354	.	-	.	Parent=Os06t0184733-01
Chr06	irgsp1_rep	five_prime_UTR	4259030	4259097	.	-	.	Parent=Os06t0184733-01
Chr06	irgsp1_rep	five_prime_UTR	4258891	4258954	.	-	.	Parent=Os06t0184733-01
Chr06	irgsp1_rep	CDS	4258853	4258890	.	-	0	Parent=Os06t0184733-01
Chr06	irgsp1_rep	CDS	4258205	4258450	.	-	1	Parent=Os06t0184733-01
Chr06	irgsp1_rep	CDS	4258026	4258106	.	-	1	Parent=Os06t0184733-01
Chr06	irgsp1_rep	CDS	4257905	4257943	.	-	1	Parent=Os06t0184733-01
Chr06	irgsp1_rep	mRNA	4260333	4264095	.	+	.	ID=Os06t0184766-00;Name=Os06t0184766-00;Locus_id=Os06g0184766;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B8B3J0 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);TENOR=Os06t0184766-00;KEGG=Os06t0184766-00
Chr06	irgsp1_rep	CDS	4260333	4260514	.	+	0	Parent=Os06t0184766-00
Chr06	irgsp1_rep	CDS	4260590	4260701	.	+	1	Parent=Os06t0184766-00
Chr06	irgsp1_rep	CDS	4262317	4262427	.	+	0	Parent=Os06t0184766-00
Chr06	irgsp1_rep	CDS	4262810	4262997	.	+	0	Parent=Os06t0184766-00
Chr06	irgsp1_rep	CDS	4263131	4263320	.	+	1	Parent=Os06t0184766-00
Chr06	irgsp1_rep	CDS	4263480	4263647	.	+	0	Parent=Os06t0184766-00
Chr06	irgsp1_rep	CDS	4264015	4264095	.	+	0	Parent=Os06t0184766-00
Chr06	irgsp1_rep	mRNA	4264424	4265115	.	-	.	ID=Os06t0184800-01;Name=Os06t0184800-01;Locus_id=Os06g0184800;Oryzabase Gene Symbol Synonym(s)=OsRCI2-8;Oryzabase Gene Name Synonym(s)=rare cold-inducible 2-8;Note=Similar to Low-temperature induced protein lt101.1 (Blt101) (Blt101.1).;Transcript_evidence=AK121018 (DDBJ%2C Best hit);ORF_evidence=NP_001151727.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Proteolipid membrane potential modulator (IPR000612);NIAS_FLcDNA=J023049B21;Oryzabase=18172;Expression=AK121018;TENOR=Os06t0184800-01;KEGG=Os06t0184800-01
Chr06	irgsp1_rep	five_prime_UTR	4265056	4265115	.	-	.	Parent=Os06t0184800-01
Chr06	irgsp1_rep	CDS	4264969	4265055	.	-	0	Parent=Os06t0184800-01
Chr06	irgsp1_rep	CDS	4264710	4264853	.	-	0	Parent=Os06t0184800-01
Chr06	irgsp1_rep	three_prime_UTR	4264424	4264709	.	-	.	Parent=Os06t0184800-01
Chr06	irgsp1_rep	mRNA	4264760	4265179	.	+	.	ID=Os06t0184834-00;Name=Os06t0184834-00;Locus_id=Os06g0184834;Note=Hypothetical protein.;Transcript_evidence=BT019258 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0184834-00
Chr06	irgsp1_rep	five_prime_UTR	4264760	4264821	.	+	.	Parent=Os06t0184834-00
Chr06	irgsp1_rep	CDS	4264822	4264854	.	+	0	Parent=Os06t0184834-00
Chr06	irgsp1_rep	CDS	4264971	4265179	.	+	0	Parent=Os06t0184834-00
Chr06	irgsp1_rep	mRNA	4266432	4270512	.	-	.	ID=Os06t0184866-01;Name=Os06t0184866-01;Locus_id=Os06g0184866;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK287768 (DDBJ%2C Best hit);ORF_evidence=NP_001174641.1 (RefSeq);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J065165O14;TENOR=Os06t0184866-01;KEGG=Os06t0184866-01
Chr06	irgsp1_rep	five_prime_UTR	4268139	4270512	.	-	.	Parent=Os06t0184866-01
Chr06	irgsp1_rep	CDS	4266972	4268138	.	-	0	Parent=Os06t0184866-01
Chr06	irgsp1_rep	three_prime_UTR	4266432	4266971	.	-	.	Parent=Os06t0184866-01
Chr06	irgsp1_rep	mRNA	4269116	4270614	.	+	.	ID=Os06t0184900-01;Name=Os06t0184900-01;Locus_id=Os06g0184900;CGSNL Gene Symbol=HCT3;CGSNL Gene Name=HYDROXYCINNAMOYLTRANSFERASE 3;Oryzabase Gene Symbol Synonym(s)=OsHCT3%2C Os-PHT1%2C OsPHT1%2C PHT1;Oryzabase Gene Name Synonym(s)=Hydroxycinnamoyltransferase 3%2C putrescine hy- droxycinnamoyl transferase 1;Note=Transferase family protein.;Transcript_evidence=AK109842 (DDBJ%2C Best hit);ORF_evidence=A2YA28 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=002-148-E02;Oryzabase=10358;Expression=AK109842;TENOR=Os06t0184900-01;KEGG=Os06t0184900-01
Chr06	irgsp1_rep	five_prime_UTR	4269116	4269170	.	+	.	Parent=Os06t0184900-01
Chr06	irgsp1_rep	CDS	4269171	4270508	.	+	0	Parent=Os06t0184900-01
Chr06	irgsp1_rep	three_prime_UTR	4270509	4270614	.	+	.	Parent=Os06t0184900-01
Chr06	irgsp1_rep	mRNA	4276289	4277154	.	+	.	ID=Os06t0185100-00;Name=Os06t0185100-00;Locus_id=Os06g0185100;Note=Similar to estradiol 17-beta-dehydrogenase 8.;Transcript_evidence=AK366861 (DDBJ);ORF_evidence=NP_001150880.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);TENOR=Os06t0185100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	4276289	4277140	.	+	0	Parent=Os06t0185100-00
Chr06	irgsp1_rep	three_prime_UTR	4277141	4277154	.	+	.	Parent=Os06t0185100-00
Chr06	irgsp1_rep	mRNA	4286708	4287890	.	+	.	ID=Os06t0185300-01;Name=Os06t0185300-01;Locus_id=Os06g0185300;CGSNL Gene Symbol=PHT2;CGSNL Gene Name=PUTRESCINE HYDROXYCINNAMOYL TRANSFERASE 2;Oryzabase Gene Symbol Synonym(s)=Os-PHT2%2C OsPHT2;Oryzabase Gene Name Synonym(s)=putrescine hydroxycinnamoyl transferase 2;Note=Transferase family protein.;Transcript_evidence=AK109116 (DDBJ%2C Best hit);ORF_evidence=A2YA30 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=002-155-C07;Oryzabase=21361;Expression=AK109116;TENOR=Os06t0185300-01;KEGG=Os06t0185300-01
Chr06	irgsp1_rep	five_prime_UTR	4286708	4286801	.	+	.	Parent=Os06t0185300-01
Chr06	irgsp1_rep	CDS	4286802	4287761	.	+	0	Parent=Os06t0185300-01
Chr06	irgsp1_rep	three_prime_UTR	4287762	4287890	.	+	.	Parent=Os06t0185300-01
Chr06	irgsp1_rep	mRNA	4288255	4288983	.	+	.	ID=Os06t0185400-01;Name=Os06t0185400-01;Locus_id=Os06g0185400;Note=Conserved hypothetical protein.;Transcript_evidence=AK107760 (DDBJ%2C Best hit);ORF_evidence=A3B926 (UniProt);NIAS_FLcDNA=002-133-A08;TENOR=Os06t0185400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	4288255	4288578	.	+	.	Parent=Os06t0185400-01
Chr06	irgsp1_rep	CDS	4288579	4288950	.	+	0	Parent=Os06t0185400-01
Chr06	irgsp1_rep	three_prime_UTR	4288951	4288983	.	+	.	Parent=Os06t0185400-01
Chr06	irgsp1_rep	mRNA	4301775	4303137	.	-	.	ID=Os06t0185500-00;Name=Os06t0185500-00;Locus_id=Os06g0185500;CGSNL Gene Symbol=HCT4;CGSNL Gene Name=HYDROXYCINNAMOYLTRANSFERASE 4;Oryzabase Gene Symbol Synonym(s)=OsHCT4;Oryzabase Gene Name Synonym(s)=Hydroxycinnamoyltransferase 4;Note=Transferase family protein.;Transcript_evidence=AK332885 (DDBJ);ORF_evidence=NP_001057003.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);Oryzabase=10359;TENOR=Os06t0185500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	4303077	4303137	.	-	.	Parent=Os06t0185500-00
Chr06	irgsp1_rep	CDS	4301775	4303076	.	-	0	Parent=Os06t0185500-00
Chr06	irgsp1_rep	mRNA	4313339	4316576	.	+	.	ID=Os06t0185700-01;Name=Os06t0185700-01;Locus_id=Os06g0185700;Note=Hypothetical conserved gene.;Transcript_evidence=AK288980 (DDBJ%2C Best hit);ORF_evidence=NP_001057004.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J090085N06;TENOR=Os06t0185700-01;KEGG=Os06t0185700-01
Chr06	irgsp1_rep	CDS	4313339	4315333	.	+	0	Parent=Os06t0185700-01
Chr06	irgsp1_rep	three_prime_UTR	4315334	4315692	.	+	.	Parent=Os06t0185700-01
Chr06	irgsp1_rep	three_prime_UTR	4315957	4316576	.	+	.	Parent=Os06t0185700-01
Chr06	irgsp1_rep	mRNA	4315723	4319249	.	-	.	ID=Os06t0185800-01;Name=Os06t0185800-01;Locus_id=Os06g0185800;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK120685 (DDBJ%2C Best hit);ORF_evidence=XP_002437979.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013164N07;Expression=AK120685;TENOR=Os06t0185800-01;KEGG=Os06t0185800-01
Chr06	irgsp1_rep	five_prime_UTR	4319218	4319249	.	-	.	Parent=Os06t0185800-01
Chr06	irgsp1_rep	CDS	4316854	4319217	.	-	0	Parent=Os06t0185800-01
Chr06	irgsp1_rep	three_prime_UTR	4315723	4316853	.	-	.	Parent=Os06t0185800-01
Chr06	irgsp1_rep	mRNA	4321654	4325071	.	+	.	ID=Os06t0185900-01;Name=Os06t0185900-01;Locus_id=Os06g0185900;CGSNL Gene Symbol=GPX4;CGSNL Gene Name=GLUTATHIONE PEROXIDASE 4;Oryzabase Gene Symbol Synonym(s)=OsGpx4%2C GPX4%2C OsGPx04%2C OsGPX4;Oryzabase Gene Name Synonym(s)=glutathione peroxidase 4;Note=Similar to Glutathione peroxidase.;Transcript_evidence=AK243433 (DDBJ%2C Best hit);ORF_evidence=A2YA34 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: glutathione peroxidase activity (GO:0004602);InterPro=Glutathione peroxidase (IPR000889),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=J100067P15;Oryzabase=11399;TENOR=Os06t0185900-01;KEGG=Os06t0185900-01 (EC:1.11.1.9)
Chr06	irgsp1_rep	five_prime_UTR	4321654	4321711	.	+	.	Parent=Os06t0185900-01
Chr06	irgsp1_rep	CDS	4321712	4321960	.	+	0	Parent=Os06t0185900-01
Chr06	irgsp1_rep	CDS	4322771	4322847	.	+	0	Parent=Os06t0185900-01
Chr06	irgsp1_rep	CDS	4322957	4323018	.	+	1	Parent=Os06t0185900-01
Chr06	irgsp1_rep	CDS	4323199	4323317	.	+	2	Parent=Os06t0185900-01
Chr06	irgsp1_rep	CDS	4323420	4323587	.	+	0	Parent=Os06t0185900-01
Chr06	irgsp1_rep	CDS	4324823	4324852	.	+	0	Parent=Os06t0185900-01
Chr06	irgsp1_rep	three_prime_UTR	4324853	4325071	.	+	.	Parent=Os06t0185900-01
Chr06	irgsp1_rep	mRNA	4322764	4323592	.	-	.	ID=Os06t0185933-00;Name=Os06t0185933-00;Locus_id=Os06g0185933;Note=Non-protein coding transcript.;Transcript_evidence=AF366451 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0185933-00
Chr06	irgsp1_rep	exon	4323432	4323592	.	-	.	Parent=Os06t0185933-00
Chr06	irgsp1_rep	exon	4323182	4323326	.	-	.	Parent=Os06t0185933-00
Chr06	irgsp1_rep	exon	4322764	4322888	.	-	.	Parent=Os06t0185933-00
Chr06	irgsp1_rep	mRNA	4326731	4329367	.	+	.	ID=Os06t0185966-00;Name=Os06t0185966-00;Locus_id=Os06g0185966;Note=Similar to Glutathione peroxidase.;Transcript_evidence=BT039865 (DDBJ);ORF_evidence=B9FRW5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os06t0185966-00
Chr06	irgsp1_rep	CDS	4326731	4329367	.	+	0	Parent=Os06t0185966-00
Chr06	irgsp1_rep	mRNA	4329666	4330597	.	+	.	ID=Os06t0186000-01;Name=Os06t0186000-01;Locus_id=Os06g0186000;Oryzabase Gene Symbol Synonym(s)=OsSTA171;Note=Similar to Glutathione peroxidase.;Transcript_evidence=AK119326 (DDBJ%2C Best hit);ORF_evidence=B9FRW5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=001-131-B01;Oryzabase=22820;TENOR=Os06t0186000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	4329666	4329735	.	+	.	Parent=Os06t0186000-01
Chr06	irgsp1_rep	CDS	4329736	4330161	.	+	0	Parent=Os06t0186000-01
Chr06	irgsp1_rep	three_prime_UTR	4330162	4330597	.	+	.	Parent=Os06t0186000-01
Chr06	irgsp1_rep	mRNA	4331516	4334810	.	-	.	ID=Os06t0186100-00;Name=Os06t0186100-00;Locus_id=Os06g0186100;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK368869 (DDBJ);ORF_evidence=Q5SMW4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os06t0186100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	4334807	4334810	.	-	.	Parent=Os06t0186100-00
Chr06	irgsp1_rep	CDS	4333503	4334806	.	-	0	Parent=Os06t0186100-00
Chr06	irgsp1_rep	CDS	4332082	4333427	.	-	1	Parent=Os06t0186100-00
Chr06	irgsp1_rep	CDS	4331516	4331973	.	-	2	Parent=Os06t0186100-00
Chr06	irgsp1_rep	mRNA	4339307	4342791	.	-	.	ID=Os06t0186300-00;Name=Os06t0186300-00;Locus_id=Os06g0186300;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001057008.2 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);TENOR=Os06t0186300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	4341029	4342791	.	-	0	Parent=Os06t0186300-00
Chr06	irgsp1_rep	CDS	4339307	4339727	.	-	1	Parent=Os06t0186300-00
Chr06	irgsp1_rep	mRNA	4347162	4353377	.	-	.	ID=Os06t0186400-01;Name=Os06t0186400-01;Locus_id=Os06g0186400;CGSNL Gene Symbol=SCP32;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 32;Oryzabase Gene Symbol Synonym(s)=OsSCP32;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 32;Note=Similar to Serine carboxypeptidase II-2 precursor (EC 3.4.16.6) (CP-MII.2) (Fragment).;Transcript_evidence=AK067247 (DDBJ%2C Best hit),AK066243 (DDBJ%2C Best hit);ORF_evidence=P55748 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=J013098N22,J013050J23;Oryzabase=19212;Expression=AK067247;TENOR=Os06t0186400-01;KEGG=Os06t0186400-01 (EC:3.4.16.6)
Chr06	irgsp1_rep	five_prime_UTR	4353340	4353377	.	-	.	Parent=Os06t0186400-01
Chr06	irgsp1_rep	CDS	4353039	4353339	.	-	0	Parent=Os06t0186400-01
Chr06	irgsp1_rep	CDS	4351169	4351276	.	-	2	Parent=Os06t0186400-01
Chr06	irgsp1_rep	CDS	4350784	4350879	.	-	2	Parent=Os06t0186400-01
Chr06	irgsp1_rep	CDS	4350592	4350684	.	-	2	Parent=Os06t0186400-01
Chr06	irgsp1_rep	CDS	4350408	4350493	.	-	2	Parent=Os06t0186400-01
Chr06	irgsp1_rep	CDS	4349822	4350088	.	-	0	Parent=Os06t0186400-01
Chr06	irgsp1_rep	CDS	4349006	4349139	.	-	0	Parent=Os06t0186400-01
Chr06	irgsp1_rep	CDS	4348419	4348514	.	-	1	Parent=Os06t0186400-01
Chr06	irgsp1_rep	CDS	4348018	4348126	.	-	1	Parent=Os06t0186400-01
Chr06	irgsp1_rep	CDS	4347461	4347625	.	-	0	Parent=Os06t0186400-01
Chr06	irgsp1_rep	three_prime_UTR	4347162	4347460	.	-	.	Parent=Os06t0186400-01
Chr06	irgsp1_rep	mRNA	4362697	4370853	.	+	.	ID=Os06t0186500-01;Name=Os06t0186500-01;Locus_id=Os06g0186500;Note=Similar to predicted protein.;Transcript_evidence=AK288756 (DDBJ%2C Best hit);ORF_evidence=B8B3R0 (UniProt);NIAS_FLcDNA=J090066A17;TENOR=Os06t0186500-01;KEGG=Os06t0186500-01
Chr06	irgsp1_rep	five_prime_UTR	4362697	4362879	.	+	.	Parent=Os06t0186500-01
Chr06	irgsp1_rep	CDS	4362880	4363055	.	+	0	Parent=Os06t0186500-01
Chr06	irgsp1_rep	CDS	4364023	4364059	.	+	1	Parent=Os06t0186500-01
Chr06	irgsp1_rep	CDS	4364479	4364582	.	+	0	Parent=Os06t0186500-01
Chr06	irgsp1_rep	CDS	4365125	4365320	.	+	1	Parent=Os06t0186500-01
Chr06	irgsp1_rep	CDS	4365568	4365634	.	+	0	Parent=Os06t0186500-01
Chr06	irgsp1_rep	CDS	4366078	4366181	.	+	2	Parent=Os06t0186500-01
Chr06	irgsp1_rep	CDS	4366273	4366357	.	+	0	Parent=Os06t0186500-01
Chr06	irgsp1_rep	CDS	4366492	4366552	.	+	2	Parent=Os06t0186500-01
Chr06	irgsp1_rep	CDS	4366877	4367008	.	+	1	Parent=Os06t0186500-01
Chr06	irgsp1_rep	CDS	4367107	4367176	.	+	1	Parent=Os06t0186500-01
Chr06	irgsp1_rep	CDS	4367727	4367784	.	+	0	Parent=Os06t0186500-01
Chr06	irgsp1_rep	CDS	4367872	4367927	.	+	2	Parent=Os06t0186500-01
Chr06	irgsp1_rep	CDS	4368444	4368596	.	+	0	Parent=Os06t0186500-01
Chr06	irgsp1_rep	CDS	4368766	4368877	.	+	0	Parent=Os06t0186500-01
Chr06	irgsp1_rep	CDS	4368962	4369103	.	+	2	Parent=Os06t0186500-01
Chr06	irgsp1_rep	CDS	4369835	4369910	.	+	1	Parent=Os06t0186500-01
Chr06	irgsp1_rep	CDS	4370045	4370140	.	+	0	Parent=Os06t0186500-01
Chr06	irgsp1_rep	CDS	4370244	4370372	.	+	0	Parent=Os06t0186500-01
Chr06	irgsp1_rep	three_prime_UTR	4370373	4370403	.	+	.	Parent=Os06t0186500-01
Chr06	irgsp1_rep	three_prime_UTR	4370477	4370853	.	+	.	Parent=Os06t0186500-01
Chr06	irgsp1_rep	mRNA	4371000	4376383	.	-	.	ID=Os06t0186600-01;Name=Os06t0186600-01;Locus_id=Os06g0186600;Note=Conserved hypothetical protein.;Transcript_evidence=AK099819 (DDBJ%2C Best hit);ORF_evidence=A2YA40 (UniProt);NIAS_FLcDNA=J013100I11;TENOR=Os06t0186600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	4376215	4376383	.	-	.	Parent=Os06t0186600-01
Chr06	irgsp1_rep	CDS	4375954	4376214	.	-	0	Parent=Os06t0186600-01
Chr06	irgsp1_rep	three_prime_UTR	4374139	4375953	.	-	.	Parent=Os06t0186600-01
Chr06	irgsp1_rep	three_prime_UTR	4373522	4373695	.	-	.	Parent=Os06t0186600-01
Chr06	irgsp1_rep	three_prime_UTR	4373335	4373441	.	-	.	Parent=Os06t0186600-01
Chr06	irgsp1_rep	three_prime_UTR	4372200	4372519	.	-	.	Parent=Os06t0186600-01
Chr06	irgsp1_rep	three_prime_UTR	4371000	4371887	.	-	.	Parent=Os06t0186600-01
Chr06	irgsp1_rep	mRNA	4371000	4373696	.	-	.	ID=Os06t0186600-02;Name=Os06t0186600-02;Locus_id=Os06g0186600;Note=Similar to predicted protein.;Transcript_evidence=AK062237 (DDBJ%2C Best hit);ORF_evidence=A3B936 (UniProt);NIAS_FLcDNA=001-047-E04;Expression=AK062237;TENOR=Os06t0186600-02;KEGG=Os06t0186600-02
Chr06	irgsp1_rep	five_prime_UTR	4373696	4373696	.	-	.	Parent=Os06t0186600-02
Chr06	irgsp1_rep	CDS	4373522	4373695	.	-	0	Parent=Os06t0186600-02
Chr06	irgsp1_rep	CDS	4373335	4373441	.	-	0	Parent=Os06t0186600-02
Chr06	irgsp1_rep	CDS	4372200	4372519	.	-	1	Parent=Os06t0186600-02
Chr06	irgsp1_rep	CDS	4371316	4371887	.	-	2	Parent=Os06t0186600-02
Chr06	irgsp1_rep	three_prime_UTR	4371000	4371315	.	-	.	Parent=Os06t0186600-02
Chr06	irgsp1_rep	mRNA	4371048	4376238	.	+	.	ID=Os06t0186650-00;Name=Os06t0186650-00;Locus_id=Os06g0186650;Note=Non-protein coding transcript.;Transcript_evidence=tplb0045e14 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os06t0186650-00
Chr06	irgsp1_rep	exon	4371048	4371896	.	+	.	Parent=Os06t0186650-00
Chr06	irgsp1_rep	exon	4372210	4372503	.	+	.	Parent=Os06t0186650-00
Chr06	irgsp1_rep	exon	4373335	4373439	.	+	.	Parent=Os06t0186650-00
Chr06	irgsp1_rep	exon	4373520	4373685	.	+	.	Parent=Os06t0186650-00
Chr06	irgsp1_rep	exon	4374131	4374389	.	+	.	Parent=Os06t0186650-00
Chr06	irgsp1_rep	exon	4376018	4376238	.	+	.	Parent=Os06t0186650-00
Chr06	irgsp1_rep	mRNA	4379813	4383418	.	-	.	ID=Os06t0186700-01;Name=Os06t0186700-01;Locus_id=Os06g0186700;Note=Biopterin transport-related protein BT1 family protein.;Transcript_evidence=AK073039 (DDBJ%2C Best hit);ORF_evidence=XP_002872136.1 (RefSeq);InterPro=Biopterin transport-related protein BT1 (IPR004324),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J023150N04;Expression=AK073039;TENOR=Os06t0186700-01;KEGG=Os06t0186700-01
Chr06	irgsp1_rep	five_prime_UTR	4382944	4383418	.	-	.	Parent=Os06t0186700-01
Chr06	irgsp1_rep	CDS	4382532	4382943	.	-	0	Parent=Os06t0186700-01
Chr06	irgsp1_rep	CDS	4381497	4381756	.	-	2	Parent=Os06t0186700-01
Chr06	irgsp1_rep	CDS	4381153	4381248	.	-	0	Parent=Os06t0186700-01
Chr06	irgsp1_rep	CDS	4380895	4381065	.	-	0	Parent=Os06t0186700-01
Chr06	irgsp1_rep	CDS	4380013	4380693	.	-	0	Parent=Os06t0186700-01
Chr06	irgsp1_rep	three_prime_UTR	4379813	4380012	.	-	.	Parent=Os06t0186700-01
Chr06	irgsp1_rep	mRNA	4388233	4391751	.	-	.	ID=Os06t0186900-01;Name=Os06t0186900-01;Locus_id=Os06g0186900;Note=TIP49%2C C-terminal domain containing protein.;Transcript_evidence=AK105241 (DDBJ%2C Best hit);ORF_evidence=NP_001150627.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: DNA helicase activity (GO:0003678),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),TIP49%2C C-terminal (IPR010339);NIAS_FLcDNA=001-113-D06;Expression=AK105241;TENOR=Os06t0186900-01;KEGG=Os06t0186900-01 (EC:3.6.1.-)
Chr06	irgsp1_rep	five_prime_UTR	4391611	4391751	.	-	.	Parent=Os06t0186900-01
Chr06	irgsp1_rep	CDS	4390823	4391610	.	-	0	Parent=Os06t0186900-01
Chr06	irgsp1_rep	CDS	4388435	4389077	.	-	1	Parent=Os06t0186900-01
Chr06	irgsp1_rep	three_prime_UTR	4388233	4388434	.	-	.	Parent=Os06t0186900-01
Chr06	irgsp1_rep	mRNA	4393423	4401094	.	+	.	ID=Os06t0187000-01;Name=Os06t0187000-01;Locus_id=Os06g0187000;CGSNL Gene Symbol=ORC1;CGSNL Gene Name=ORIGIN RECOGNITION COMPLEX 1;Oryzabase Gene Symbol Synonym(s)=OsORC1;Note=Similar to Origin recognition complex 1.;Transcript_evidence=AK103068 (DDBJ%2C Best hit);ORF_evidence=Q9MB44 (UniProt);NIAS_FLcDNA=J033117P13;Oryzabase=9121;TENOR=Os06t0187000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	4393423	4393423	.	+	.	Parent=Os06t0187000-01
Chr06	irgsp1_rep	CDS	4393424	4394182	.	+	0	Parent=Os06t0187000-01
Chr06	irgsp1_rep	three_prime_UTR	4394183	4394206	.	+	.	Parent=Os06t0187000-01
Chr06	irgsp1_rep	three_prime_UTR	4394679	4394814	.	+	.	Parent=Os06t0187000-01
Chr06	irgsp1_rep	three_prime_UTR	4394907	4395059	.	+	.	Parent=Os06t0187000-01
Chr06	irgsp1_rep	three_prime_UTR	4395168	4395311	.	+	.	Parent=Os06t0187000-01
Chr06	irgsp1_rep	three_prime_UTR	4395407	4395558	.	+	.	Parent=Os06t0187000-01
Chr06	irgsp1_rep	three_prime_UTR	4395636	4395735	.	+	.	Parent=Os06t0187000-01
Chr06	irgsp1_rep	three_prime_UTR	4395836	4395958	.	+	.	Parent=Os06t0187000-01
Chr06	irgsp1_rep	three_prime_UTR	4396059	4396220	.	+	.	Parent=Os06t0187000-01
Chr06	irgsp1_rep	three_prime_UTR	4396373	4396430	.	+	.	Parent=Os06t0187000-01
Chr06	irgsp1_rep	three_prime_UTR	4396507	4396685	.	+	.	Parent=Os06t0187000-01
Chr06	irgsp1_rep	three_prime_UTR	4397477	4397585	.	+	.	Parent=Os06t0187000-01
Chr06	irgsp1_rep	three_prime_UTR	4397750	4397820	.	+	.	Parent=Os06t0187000-01
Chr06	irgsp1_rep	three_prime_UTR	4398074	4398169	.	+	.	Parent=Os06t0187000-01
Chr06	irgsp1_rep	three_prime_UTR	4398910	4398986	.	+	.	Parent=Os06t0187000-01
Chr06	irgsp1_rep	three_prime_UTR	4400166	4400249	.	+	.	Parent=Os06t0187000-01
Chr06	irgsp1_rep	three_prime_UTR	4400631	4400790	.	+	.	Parent=Os06t0187000-01
Chr06	irgsp1_rep	three_prime_UTR	4400927	4401094	.	+	.	Parent=Os06t0187000-01
Chr06	irgsp1_rep	mRNA	4400730	4401129	.	+	.	ID=Os06t0187000-02;Name=Os06t0187000-02;Locus_id=Os06g0187000;CGSNL Gene Symbol=ORC1;CGSNL Gene Name=ORIGIN RECOGNITION COMPLEX 1;Oryzabase Gene Symbol Synonym(s)=OsORC1;Note=Non-protein coding transcript.;Transcript_evidence=AK105033 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-030-E06;Oryzabase=9121;TENOR=Os06t0187000-02
Chr06	irgsp1_rep	exon	4400730	4400790	.	+	.	Parent=Os06t0187000-02
Chr06	irgsp1_rep	exon	4400927	4401129	.	+	.	Parent=Os06t0187000-02
Chr06	irgsp1_rep	mRNA	4401295	4402343	.	-	.	ID=Os06t0187050-01;Name=Os06t0187050-01;Locus_id=Os06g0187050;Note=Hypothetical gene.;Transcript_evidence=AK287962 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J075061F20;TENOR=Os06t0187050-01;KEGG=Os06t0187050-01
Chr06	irgsp1_rep	five_prime_UTR	4402342	4402343	.	-	.	Parent=Os06t0187050-01
Chr06	irgsp1_rep	CDS	4401787	4402341	.	-	0	Parent=Os06t0187050-01
Chr06	irgsp1_rep	three_prime_UTR	4401295	4401786	.	-	.	Parent=Os06t0187050-01
Chr06	irgsp1_rep	mRNA	4401651	4403235	.	+	.	ID=Os06t0187100-00;Name=Os06t0187100-00;Locus_id=Os06g0187100;Note=Similar to F26G16.17 protein.;Transcript_evidence=EU947273 (DDBJ);ORF_evidence=XP_002894016.1 (RefSeq);GO=Biological Process: RNA methylation (GO:0001510),Biological Process: RNA capping (GO:0009452),Molecular Function: methyltransferase activity (GO:0008168);InterPro=RNA cap guanine-N2 methyltransferase (IPR019012);TENOR=Os06t0187100-00;KEGG=Os06t0187100-00
Chr06	irgsp1_rep	CDS	4401651	4402138	.	+	0	Parent=Os06t0187100-00
Chr06	irgsp1_rep	CDS	4402212	4402350	.	+	1	Parent=Os06t0187100-00
Chr06	irgsp1_rep	CDS	4402763	4402854	.	+	0	Parent=Os06t0187100-00
Chr06	irgsp1_rep	CDS	4402928	4403051	.	+	1	Parent=Os06t0187100-00
Chr06	irgsp1_rep	CDS	4403149	4403235	.	+	0	Parent=Os06t0187100-00
Chr06	irgsp1_rep	mRNA	4404127	4405602	.	-	.	ID=Os06t0187200-01;Name=Os06t0187200-01;Locus_id=Os06g0187200;Oryzabase Gene Symbol Synonym(s)=OsUGlcAE5%2C UGlcAE5%2C OsSTA172;Oryzabase Gene Name Synonym(s)=UDP-glucuronic acid 4-epimerase 5;Note=Similar to Nucleotide sugar epimerase-like protein (UDP-D-glucuronate 4- epimerase) (EC 5.1.3.6).;Transcript_evidence=AK106963 (DDBJ%2C Best hit);ORF_evidence=Q304Y2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: racemase and epimerase activity%2C acting on carbohydrates and derivatives (GO:0016857),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),Nucleotide sugar epimerase (IPR008089),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=002-119-F08;Oryzabase=15786;Expression=AK106963;TENOR=Os06t0187200-01;KEGG=Os06t0187200-01 (EC:5.1.3.6)
Chr06	irgsp1_rep	CDS	4405055	4405602	.	-	0	Parent=Os06t0187200-01
Chr06	irgsp1_rep	CDS	4404263	4404644	.	-	1	Parent=Os06t0187200-01
Chr06	irgsp1_rep	three_prime_UTR	4404127	4404262	.	-	.	Parent=Os06t0187200-01
Chr06	irgsp1_rep	mRNA	4409926	4411390	.	+	.	ID=Os06t0187300-00;Name=Os06t0187300-00;Locus_id=Os06g0187300;Note=Similar to RING-H2 finger protein ATL2C.;Transcript_evidence=AK371256 (DDBJ);ORF_evidence=NP_001149313.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os06t0187300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	4409926	4410288	.	+	0	Parent=Os06t0187300-00
Chr06	irgsp1_rep	CDS	4410344	4411390	.	+	0	Parent=Os06t0187300-00
Chr06	irgsp1_rep	mRNA	4410132	4410655	.	-	.	ID=Os06t0187350-00;Name=Os06t0187350-00;Locus_id=Os06g0187350;Note=Hypothetical protein.;Transcript_evidence=EU943053 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0187350-00
Chr06	irgsp1_rep	CDS	4410132	4410655	.	-	0	Parent=Os06t0187350-00
Chr06	irgsp1_rep	mRNA	4418788	4420340	.	-	.	ID=Os06t0187500-00;Name=Os06t0187500-00;Locus_id=Os06g0187500;Note=Hypothetical conserved gene.;Transcript_evidence=AK375409 (DDBJ);ORF_evidence=NP_001057016.2 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os06t0187500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	4420336	4420340	.	-	.	Parent=Os06t0187500-00
Chr06	irgsp1_rep	CDS	4418788	4420335	.	-	0	Parent=Os06t0187500-00
Chr06	irgsp1_rep	mRNA	4424383	4425671	.	-	.	ID=Os06t0187700-01;Name=Os06t0187700-01;Locus_id=Os06g0187700;Note=Conserved hypothetical protein.;Transcript_evidence=AK070665 (DDBJ%2C Best hit);ORF_evidence=Q94LB8 (UniProt);NIAS_FLcDNA=J023056L21;Expression=AK070665;TENOR=Os06t0187700-01;KEGG=Os06t0187700-01
Chr06	irgsp1_rep	five_prime_UTR	4424639	4425671	.	-	.	Parent=Os06t0187700-01
Chr06	irgsp1_rep	CDS	4424447	4424638	.	-	0	Parent=Os06t0187700-01
Chr06	irgsp1_rep	three_prime_UTR	4424383	4424446	.	-	.	Parent=Os06t0187700-01
Chr06	irgsp1_rep	mRNA	4428670	4431522	.	+	.	ID=Os06t0187900-01;Name=Os06t0187900-01;Locus_id=Os06g0187900;CGSNL Gene Symbol=RSZP21A;Oryzabase Gene Symbol Synonym(s)=Os-RSZ21a%2C OsRSZ21a%2C Os-RSZp21a%2C OsRSZp21a;Oryzabase Gene Name Synonym(s)=RS domain with zinc knuckle protein 21A%2C RSZ subfamily protein 21A;Note=RNA recognition motif%2C RNP-1 domain containing protein.;Transcript_evidence=AK063879 (DDBJ%2C Best hit);ORF_evidence=B6TDA1 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA recognition motif domain (IPR000504),Zinc finger%2C CCHC-type (IPR001878),Nucleotide-binding%2C alpha-beta plait (IPR012677),Zinc finger%2C CCHC retroviral-type (IPR013084);NIAS_FLcDNA=001-122-F06;Oryzabase=22735;Expression=AK063879;TENOR=Os06t0187900-01;KEGG=Os06t0187900-01
Chr06	irgsp1_rep	five_prime_UTR	4428670	4428799	.	+	.	Parent=Os06t0187900-01
Chr06	irgsp1_rep	five_prime_UTR	4429000	4429011	.	+	.	Parent=Os06t0187900-01
Chr06	irgsp1_rep	CDS	4429012	4429100	.	+	0	Parent=Os06t0187900-01
Chr06	irgsp1_rep	CDS	4429833	4429921	.	+	1	Parent=Os06t0187900-01
Chr06	irgsp1_rep	CDS	4430402	4430636	.	+	2	Parent=Os06t0187900-01
Chr06	irgsp1_rep	CDS	4431075	4431197	.	+	1	Parent=Os06t0187900-01
Chr06	irgsp1_rep	CDS	4431307	4431328	.	+	1	Parent=Os06t0187900-01
Chr06	irgsp1_rep	three_prime_UTR	4431329	4431522	.	+	.	Parent=Os06t0187900-01
Chr06	irgsp1_rep	mRNA	4428678	4432280	.	+	.	ID=Os06t0187900-02;Name=Os06t0187900-02;Locus_id=Os06g0187900;CGSNL Gene Symbol=RSZP21A;Oryzabase Gene Symbol Synonym(s)=Os-RSZ21a%2C OsRSZ21a%2C Os-RSZp21a%2C OsRSZp21a;Oryzabase Gene Name Synonym(s)=RS domain with zinc knuckle protein 21A%2C RSZ subfamily protein 21A;Note=RNA recognition motif%2C RNP-1 domain containing protein.;Transcript_evidence=AK071765 (DDBJ%2C Best hit);ORF_evidence=B6TDA1 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA recognition motif domain (IPR000504),Zinc finger%2C CCHC-type (IPR001878),Nucleotide-binding%2C alpha-beta plait (IPR012677),Zinc finger%2C CCHC retroviral-type (IPR013084);NIAS_FLcDNA=J023112N11;Oryzabase=22735;Expression=AK071765;TENOR=Os06t0187900-02;KEGG=Os06t0187900-02
Chr06	irgsp1_rep	five_prime_UTR	4428678	4428799	.	+	.	Parent=Os06t0187900-02
Chr06	irgsp1_rep	five_prime_UTR	4429006	4429011	.	+	.	Parent=Os06t0187900-02
Chr06	irgsp1_rep	CDS	4429012	4429100	.	+	0	Parent=Os06t0187900-02
Chr06	irgsp1_rep	CDS	4429833	4429921	.	+	1	Parent=Os06t0187900-02
Chr06	irgsp1_rep	CDS	4430402	4430636	.	+	2	Parent=Os06t0187900-02
Chr06	irgsp1_rep	CDS	4431075	4431197	.	+	1	Parent=Os06t0187900-02
Chr06	irgsp1_rep	CDS	4431307	4431328	.	+	1	Parent=Os06t0187900-02
Chr06	irgsp1_rep	three_prime_UTR	4431329	4431438	.	+	.	Parent=Os06t0187900-02
Chr06	irgsp1_rep	three_prime_UTR	4431554	4431946	.	+	.	Parent=Os06t0187900-02
Chr06	irgsp1_rep	three_prime_UTR	4432046	4432280	.	+	.	Parent=Os06t0187900-02
Chr06	irgsp1_rep	mRNA	4437058	4442208	.	-	.	ID=Os06t0187950-00;Name=Os06t0187950-00;Locus_id=Os06g0187950;Note=Hypothetical protein.;Transcript_evidence=tplb0048d05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0187950-00
Chr06	irgsp1_rep	five_prime_UTR	4441661	4442208	.	-	.	Parent=Os06t0187950-00
Chr06	irgsp1_rep	five_prime_UTR	4440700	4440922	.	-	.	Parent=Os06t0187950-00
Chr06	irgsp1_rep	five_prime_UTR	4439637	4439753	.	-	.	Parent=Os06t0187950-00
Chr06	irgsp1_rep	five_prime_UTR	4439111	4439405	.	-	.	Parent=Os06t0187950-00
Chr06	irgsp1_rep	five_prime_UTR	4438752	4438977	.	-	.	Parent=Os06t0187950-00
Chr06	irgsp1_rep	five_prime_UTR	4437923	4438394	.	-	.	Parent=Os06t0187950-00
Chr06	irgsp1_rep	five_prime_UTR	4437284	4437350	.	-	.	Parent=Os06t0187950-00
Chr06	irgsp1_rep	CDS	4437058	4437283	.	-	0	Parent=Os06t0187950-00
Chr06	irgsp1_rep	mRNA	4440848	4442813	.	+	.	ID=Os06t0188000-01;Name=Os06t0188000-01;Locus_id=Os06g0188000;CGSNL Gene Symbol=CNGC10;CGSNL Gene Name=CYCLIC NUCLEOTIDE GATED CHANNEL 10;Oryzabase Gene Symbol Synonym(s)=OsCNGC10%2C OsCNGC11;Oryzabase Gene Name Synonym(s)=Cyclic nucleotide gated channel 10%2C Cyclic nucleotide-gated ion channel 11;Note=Similar to Cyclic nucleotide-gated channel C (Fragment).;Transcript_evidence=AK066305 (DDBJ%2C Best hit);ORF_evidence=NP_194765.2 (RefSeq);InterPro=Cyclic nucleotide-binding domain (IPR000595),RmlC-like jelly roll fold (IPR014710),Cyclic nucleotide-binding-like (IPR018490);NIAS_FLcDNA=J013061G13;Oryzabase=15483;Expression=AK066305;TENOR=Os06t0188000-01;KEGG=Os06t0188000-01
Chr06	irgsp1_rep	CDS	4440848	4440934	.	+	0	Parent=Os06t0188000-01
Chr06	irgsp1_rep	CDS	4441674	4442324	.	+	0	Parent=Os06t0188000-01
Chr06	irgsp1_rep	three_prime_UTR	4442325	4442813	.	+	.	Parent=Os06t0188000-01
Chr06	irgsp1_rep	mRNA	4443021	4446510	.	-	.	ID=Os06t0188100-01;Name=Os06t0188100-01;Locus_id=Os06g0188100;Note=Protein of unknown function DUF250 domain containing protein.;Transcript_evidence=AK069205 (DDBJ%2C Best hit),AK099118 (DDBJ%2C Best hit);ORF_evidence=B6U002 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085);InterPro=UAA transporter (IPR013657);NIAS_FLcDNA=J023009C20,J023039L13;Expression=AK069205;TENOR=Os06t0188100-01;KEGG=Os06t0188100-01
Chr06	irgsp1_rep	five_prime_UTR	4446401	4446510	.	-	.	Parent=Os06t0188100-01
Chr06	irgsp1_rep	CDS	4446363	4446400	.	-	0	Parent=Os06t0188100-01
Chr06	irgsp1_rep	CDS	4445054	4445159	.	-	1	Parent=Os06t0188100-01
Chr06	irgsp1_rep	CDS	4444694	4444939	.	-	0	Parent=Os06t0188100-01
Chr06	irgsp1_rep	CDS	4444054	4444164	.	-	0	Parent=Os06t0188100-01
Chr06	irgsp1_rep	CDS	4443815	4443973	.	-	0	Parent=Os06t0188100-01
Chr06	irgsp1_rep	CDS	4443549	4443692	.	-	0	Parent=Os06t0188100-01
Chr06	irgsp1_rep	CDS	4443282	4443449	.	-	0	Parent=Os06t0188100-01
Chr06	irgsp1_rep	three_prime_UTR	4443021	4443281	.	-	.	Parent=Os06t0188100-01
Chr06	irgsp1_rep	mRNA	4459007	4463882	.	+	.	ID=Os06t0188400-01;Name=Os06t0188400-01;Locus_id=Os06g0188400;Oryzabase Gene Symbol Synonym(s)=OsGLR4.1;Oryzabase Gene Name Synonym(s)=Glutamate receptor homolog 4.1;Note=Extracellular ligand-binding receptor domain containing protein.;Transcript_evidence=AK065496 (DDBJ%2C Best hit);ORF_evidence=B9FRX3 (UniProt);InterPro=Extracellular ligand-binding receptor (IPR001828);NIAS_FLcDNA=J013024E12;Oryzabase=15506;TENOR=Os06t0188400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	4459007	4460359	.	+	0	Parent=Os06t0188400-01
Chr06	irgsp1_rep	CDS	4461900	4461992	.	+	0	Parent=Os06t0188400-01
Chr06	irgsp1_rep	three_prime_UTR	4461993	4463882	.	+	.	Parent=Os06t0188400-01
Chr06	irgsp1_rep	mRNA	4463932	4467534	.	-	.	ID=Os06t0188500-01;Name=Os06t0188500-01;Locus_id=Os06g0188500;Note=Non-protein coding transcript.;Transcript_evidence=AK100384 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023085H13;TENOR=Os06t0188500-01
Chr06	irgsp1_rep	exon	4467097	4467534	.	-	.	Parent=Os06t0188500-01
Chr06	irgsp1_rep	exon	4466912	4467015	.	-	.	Parent=Os06t0188500-01
Chr06	irgsp1_rep	exon	4466681	4466737	.	-	.	Parent=Os06t0188500-01
Chr06	irgsp1_rep	exon	4465833	4465925	.	-	.	Parent=Os06t0188500-01
Chr06	irgsp1_rep	exon	4465598	4465662	.	-	.	Parent=Os06t0188500-01
Chr06	irgsp1_rep	exon	4463932	4465446	.	-	.	Parent=Os06t0188500-01
Chr06	irgsp1_rep	mRNA	4468376	4470901	.	-	.	ID=Os06t0188550-01;Name=Os06t0188550-01;Locus_id=Os06g0188550;Note=Conserved hypothetical protein.;Transcript_evidence=AK241305 (DDBJ%2C Best hit);ORF_evidence=NP_001176373.1 (RefSeq);NIAS_FLcDNA=J065140L12;TENOR=Os06t0188550-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	4470728	4470901	.	-	.	Parent=Os06t0188550-01
Chr06	irgsp1_rep	CDS	4470635	4470727	.	-	0	Parent=Os06t0188550-01
Chr06	irgsp1_rep	CDS	4470473	4470529	.	-	0	Parent=Os06t0188550-01
Chr06	irgsp1_rep	three_prime_UTR	4468376	4470472	.	-	.	Parent=Os06t0188550-01
Chr06	irgsp1_rep	mRNA	4472352	4476661	.	-	.	ID=Os06t0188600-01;Name=Os06t0188600-01;Locus_id=Os06g0188600;Oryzabase Gene Symbol Synonym(s)=OsGLR4.2;Oryzabase Gene Name Synonym(s)=Glutamate receptor homolog 4.2;Note=Hypothetical conserved gene.;Transcript_evidence=AK242845 (DDBJ%2C Best hit);ORF_evidence=Q69KL2 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Cellular Component: outer membrane-bounded periplasmic space (GO:0030288),Molecular Function: ionotropic glutamate receptor activity (GO:0004970),Molecular Function: transporter activity (GO:0005215),Molecular Function: extracellular-glutamate-gated ion channel activity (GO:0005234);InterPro=Ionotropic glutamate receptor (IPR001320),Extracellular solute-binding protein%2C family 3 (IPR001638);NIAS_FLcDNA=J090071I05;Oryzabase=15507;TENOR=Os06t0188600-01;KEGG=Os06t0188600-01
Chr06	irgsp1_rep	five_prime_UTR	4476450	4476661	.	-	.	Parent=Os06t0188600-01
Chr06	irgsp1_rep	five_prime_UTR	4475022	4475159	.	-	.	Parent=Os06t0188600-01
Chr06	irgsp1_rep	CDS	4474185	4475021	.	-	0	Parent=Os06t0188600-01
Chr06	irgsp1_rep	CDS	4473766	4474081	.	-	0	Parent=Os06t0188600-01
Chr06	irgsp1_rep	CDS	4473276	4473673	.	-	2	Parent=Os06t0188600-01
Chr06	irgsp1_rep	CDS	4472700	4473161	.	-	0	Parent=Os06t0188600-01
Chr06	irgsp1_rep	three_prime_UTR	4472352	4472699	.	-	.	Parent=Os06t0188600-01
Chr06	irgsp1_rep	mRNA	4481240	4487783	.	-	.	ID=Os06t0188700-00;Name=Os06t0188700-00;Locus_id=Os06g0188700;Oryzabase Gene Symbol Synonym(s)=OsGLR4.3;Oryzabase Gene Name Synonym(s)=Glutamate receptor homolog 4.3;Note=Similar to Glutamate receptor.;Transcript_evidence=ab initio prediction;ORF_evidence=B8B3N1 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Cellular Component: outer membrane-bounded periplasmic space (GO:0030288),Molecular Function: ionotropic glutamate receptor activity (GO:0004970),Molecular Function: transporter activity (GO:0005215),Molecular Function: extracellular-glutamate-gated ion channel activity (GO:0005234);InterPro=Ionotropic glutamate receptor (IPR001320),Extracellular solute-binding protein%2C family 3 (IPR001638);Oryzabase=15508;TENOR=Os06t0188700-00
Chr06	irgsp1_rep	CDS	4487507	4487783	.	-	0	Parent=Os06t0188700-00
Chr06	irgsp1_rep	CDS	4484440	4485011	.	-	2	Parent=Os06t0188700-00
Chr06	irgsp1_rep	CDS	4482897	4483209	.	-	0	Parent=Os06t0188700-00
Chr06	irgsp1_rep	CDS	4481963	4482375	.	-	2	Parent=Os06t0188700-00
Chr06	irgsp1_rep	CDS	4481240	4481773	.	-	0	Parent=Os06t0188700-00
Chr06	irgsp1_rep	mRNA	4490186	4493909	.	-	.	ID=Os06t0188800-01;Name=Os06t0188800-01;Locus_id=Os06g0188800;Oryzabase Gene Symbol Synonym(s)=OsGLR4.4;Oryzabase Gene Name Synonym(s)=Glutamate receptor homolog 4.4;Note=Extracellular solute-binding protein%2C family 3 domain containing protein.;Transcript_evidence=AK240634 (DDBJ%2C Best hit),AK120124 (DDBJ%2C Best hit);ORF_evidence=B9FRX7 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: outer membrane-bounded periplasmic space (GO:0030288),Molecular Function: transporter activity (GO:0005215);InterPro=Extracellular solute-binding protein%2C family 3 (IPR001638);NIAS_FLcDNA=J013026C10;Oryzabase=15509;TENOR=Os06t0188800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	4493909	4493909	.	-	.	Parent=Os06t0188800-01
Chr06	irgsp1_rep	CDS	4493695	4493908	.	-	0	Parent=Os06t0188800-01
Chr06	irgsp1_rep	CDS	4492023	4492276	.	-	2	Parent=Os06t0188800-01
Chr06	irgsp1_rep	CDS	4491815	4491940	.	-	0	Parent=Os06t0188800-01
Chr06	irgsp1_rep	three_prime_UTR	4491625	4491814	.	-	.	Parent=Os06t0188800-01
Chr06	irgsp1_rep	three_prime_UTR	4491098	4491510	.	-	.	Parent=Os06t0188800-01
Chr06	irgsp1_rep	three_prime_UTR	4490186	4490967	.	-	.	Parent=Os06t0188800-01
Chr06	irgsp1_rep	mRNA	4489588	4492233	.	-	.	ID=Os06t0188800-02;Name=Os06t0188800-02;Locus_id=Os06g0188800;Oryzabase Gene Symbol Synonym(s)=OsGLR4.4;Oryzabase Gene Name Synonym(s)=Glutamate receptor homolog 4.4;Note=Extracellular solute-binding protein%2C family 3 domain containing protein.;Transcript_evidence=AK064465 (DDBJ%2C Best hit);ORF_evidence=B9FRX7 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: outer membrane-bounded periplasmic space (GO:0030288),Molecular Function: transporter activity (GO:0005215);InterPro=Extracellular solute-binding protein%2C family 3 (IPR001638);NIAS_FLcDNA=002-110-G09;Oryzabase=15509;TENOR=Os06t0188800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	4492233	4492233	.	-	.	Parent=Os06t0188800-02
Chr06	irgsp1_rep	CDS	4492023	4492232	.	-	0	Parent=Os06t0188800-02
Chr06	irgsp1_rep	CDS	4491815	4491940	.	-	0	Parent=Os06t0188800-02
Chr06	irgsp1_rep	three_prime_UTR	4491625	4491814	.	-	.	Parent=Os06t0188800-02
Chr06	irgsp1_rep	three_prime_UTR	4491098	4491510	.	-	.	Parent=Os06t0188800-02
Chr06	irgsp1_rep	three_prime_UTR	4490408	4490967	.	-	.	Parent=Os06t0188800-02
Chr06	irgsp1_rep	three_prime_UTR	4489588	4490080	.	-	.	Parent=Os06t0188800-02
Chr06	irgsp1_rep	mRNA	4490677	4492214	.	+	.	ID=Os06t0188875-00;Name=Os06t0188875-00;Locus_id=Os06g0188875;Note=Hypothetical protein.;Transcript_evidence=tplb0021g19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0188875-00
Chr06	irgsp1_rep	five_prime_UTR	4490677	4490945	.	+	.	Parent=Os06t0188875-00
Chr06	irgsp1_rep	five_prime_UTR	4491078	4491519	.	+	.	Parent=Os06t0188875-00
Chr06	irgsp1_rep	five_prime_UTR	4491631	4491701	.	+	.	Parent=Os06t0188875-00
Chr06	irgsp1_rep	CDS	4491702	4491934	.	+	0	Parent=Os06t0188875-00
Chr06	irgsp1_rep	CDS	4492017	4492056	.	+	1	Parent=Os06t0188875-00
Chr06	irgsp1_rep	three_prime_UTR	4492057	4492214	.	+	.	Parent=Os06t0188875-00
Chr06	irgsp1_rep	mRNA	4497399	4498060	.	-	.	ID=Os06t0188950-00;Name=Os06t0188950-00;Locus_id=Os06g0188950;Note=Conserved hypothetical protein.;Transcript_evidence=CT836295 (DDBJ%2C Best hit);ORF_evidence=B8B7Q5 (UniProt);TENOR=Os06t0188950-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	4497662	4498060	.	-	.	Parent=Os06t0188950-00
Chr06	irgsp1_rep	CDS	4497578	4497661	.	-	0	Parent=Os06t0188950-00
Chr06	irgsp1_rep	three_prime_UTR	4497399	4497577	.	-	.	Parent=Os06t0188950-00
Chr06	irgsp1_rep	mRNA	4522969	4525234	.	-	.	ID=Os06t0189200-00;Name=Os06t0189200-00;Locus_id=Os06g0189200;Note=Similar to CytoChrome P450.;Transcript_evidence=BT088039 (DDBJ);ORF_evidence=B0ZBJ3 (UniProt);TENOR=Os06t0189200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	4524628	4525234	.	-	0	Parent=Os06t0189200-00
Chr06	irgsp1_rep	CDS	4522969	4523279	.	-	2	Parent=Os06t0189200-00
Chr06	irgsp1_rep	mRNA	4530988	4532663	.	+	.	ID=Os06t0189600-01;Name=Os06t0189600-01;Locus_id=Os06g0189600;Note=Hypothetical conserved gene.;Transcript_evidence=AK107351 (DDBJ%2C Best hit);ORF_evidence=A2YA55 (UniProt);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);NIAS_FLcDNA=002-126-H06;Expression=AK107351;TENOR=Os06t0189600-01;KEGG=Os06t0189600-01
Chr06	irgsp1_rep	five_prime_UTR	4530988	4531120	.	+	.	Parent=Os06t0189600-01
Chr06	irgsp1_rep	five_prime_UTR	4531244	4531414	.	+	.	Parent=Os06t0189600-01
Chr06	irgsp1_rep	five_prime_UTR	4531493	4531526	.	+	.	Parent=Os06t0189600-01
Chr06	irgsp1_rep	CDS	4531527	4532630	.	+	0	Parent=Os06t0189600-01
Chr06	irgsp1_rep	three_prime_UTR	4532631	4532663	.	+	.	Parent=Os06t0189600-01
Chr06	irgsp1_rep	mRNA	4538337	4540266	.	+	.	ID=Os06t0189600-03;Name=Os06t0189600-03;Locus_id=Os06g0189600;Note=Protein of unknown function DUF1677%2C Oryza sativa family protein.;Transcript_evidence=AK109331 (DDBJ%2C Best hit);ORF_evidence=B8B3M7 (UniProt);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);NIAS_FLcDNA=006-201-E02;Expression=AK109331;TENOR=Os06t0189600-03;KEGG=Os06t0189600-03
Chr06	irgsp1_rep	five_prime_UTR	4538337	4538437	.	+	.	Parent=Os06t0189600-03
Chr06	irgsp1_rep	five_prime_UTR	4538561	4538694	.	+	.	Parent=Os06t0189600-03
Chr06	irgsp1_rep	five_prime_UTR	4538810	4538843	.	+	.	Parent=Os06t0189600-03
Chr06	irgsp1_rep	CDS	4538844	4540130	.	+	0	Parent=Os06t0189600-03
Chr06	irgsp1_rep	three_prime_UTR	4540131	4540266	.	+	.	Parent=Os06t0189600-03
Chr06	irgsp1_rep	mRNA	4538337	4540328	.	+	.	ID=Os06t0189600-04;Name=Os06t0189600-04;Locus_id=Os06g0189600;Note=Protein of unknown function DUF1677%2C Oryza sativa family protein.;Transcript_evidence=AK062115 (DDBJ%2C Best hit);ORF_evidence=B8B3M7 (UniProt);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);NIAS_FLcDNA=001-045-C03;Expression=AK062115;TENOR=Os06t0189600-04;KEGG=Os06t0189600-04
Chr06	irgsp1_rep	five_prime_UTR	4538337	4538437	.	+	.	Parent=Os06t0189600-04
Chr06	irgsp1_rep	five_prime_UTR	4538586	4538694	.	+	.	Parent=Os06t0189600-04
Chr06	irgsp1_rep	five_prime_UTR	4538810	4538843	.	+	.	Parent=Os06t0189600-04
Chr06	irgsp1_rep	CDS	4538844	4540130	.	+	0	Parent=Os06t0189600-04
Chr06	irgsp1_rep	three_prime_UTR	4540131	4540328	.	+	.	Parent=Os06t0189600-04
Chr06	irgsp1_rep	mRNA	4531023	4540522	.	+	.	ID=Os06t0189600-05;Name=Os06t0189600-05;Locus_id=Os06g0189600;Note=Protein of unknown function DUF1677%2C Oryza sativa family protein.;Transcript_evidence=AK121379 (DDBJ%2C Best hit);ORF_evidence=B8B3M7 (UniProt);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);NIAS_FLcDNA=J023127G11;TENOR=Os06t0189600-05
Chr06	irgsp1_rep	five_prime_UTR	4531023	4531120	.	+	.	Parent=Os06t0189600-05
Chr06	irgsp1_rep	five_prime_UTR	4531244	4531377	.	+	.	Parent=Os06t0189600-05
Chr06	irgsp1_rep	five_prime_UTR	4538810	4538843	.	+	.	Parent=Os06t0189600-05
Chr06	irgsp1_rep	CDS	4538844	4540130	.	+	0	Parent=Os06t0189600-05
Chr06	irgsp1_rep	three_prime_UTR	4540131	4540522	.	+	.	Parent=Os06t0189600-05
Chr06	irgsp1_rep	mRNA	4571098	4574904	.	-	.	ID=Os06t0190500-01;Name=Os06t0190500-01;Locus_id=Os06g0190500;Oryzabase Gene Symbol Synonym(s)=OsGLR4.7;Oryzabase Gene Name Synonym(s)=Glutamate receptor homolog 4.7;Note=Similar to Glutamate receptor.;Transcript_evidence=AK287705 (DDBJ%2C Best hit);ORF_evidence=B8B3N1 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Cellular Component: outer membrane-bounded periplasmic space (GO:0030288),Molecular Function: ionotropic glutamate receptor activity (GO:0004970),Molecular Function: transporter activity (GO:0005215),Molecular Function: extracellular-glutamate-gated ion channel activity (GO:0005234);InterPro=Ionotropic glutamate receptor (IPR001320),Extracellular solute-binding protein%2C family 3 (IPR001638);NIAS_FLcDNA=J065131P16;Oryzabase=15512;TENOR=Os06t0190500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	4574862	4574904	.	-	.	Parent=Os06t0190500-01
Chr06	irgsp1_rep	CDS	4574678	4574861	.	-	0	Parent=Os06t0190500-01
Chr06	irgsp1_rep	CDS	4572936	4573189	.	-	2	Parent=Os06t0190500-01
Chr06	irgsp1_rep	CDS	4572538	4572853	.	-	0	Parent=Os06t0190500-01
Chr06	irgsp1_rep	CDS	4572016	4572428	.	-	2	Parent=Os06t0190500-01
Chr06	irgsp1_rep	CDS	4571459	4571887	.	-	0	Parent=Os06t0190500-01
Chr06	irgsp1_rep	three_prime_UTR	4571098	4571458	.	-	.	Parent=Os06t0190500-01
Chr06	irgsp1_rep	mRNA	4571596	4573127	.	+	.	ID=Os06t0190525-00;Name=Os06t0190525-00;Locus_id=Os06g0190525;Note=Hypothetical protein.;Transcript_evidence=tplb0021g19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0190525-00
Chr06	irgsp1_rep	five_prime_UTR	4571596	4571654	.	+	.	Parent=Os06t0190525-00
Chr06	irgsp1_rep	CDS	4571655	4571865	.	+	0	Parent=Os06t0190525-00
Chr06	irgsp1_rep	CDS	4571996	4572084	.	+	2	Parent=Os06t0190525-00
Chr06	irgsp1_rep	three_prime_UTR	4572085	4572437	.	+	.	Parent=Os06t0190525-00
Chr06	irgsp1_rep	three_prime_UTR	4572544	4572847	.	+	.	Parent=Os06t0190525-00
Chr06	irgsp1_rep	three_prime_UTR	4572930	4573127	.	+	.	Parent=Os06t0190525-00
Chr06	irgsp1_rep	mRNA	4577367	4583642	.	-	.	ID=Os06t0190550-00;Name=Os06t0190550-00;Locus_id=Os06g0190550;Note=Conserved hypothetical protein.;Transcript_evidence=CT836325 (DDBJ%2C Best hit);ORF_evidence=B8BFK9 (UniProt);TENOR=Os06t0190550-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	4583174	4583642	.	-	.	Parent=Os06t0190550-00
Chr06	irgsp1_rep	five_prime_UTR	4577630	4577790	.	-	.	Parent=Os06t0190550-00
Chr06	irgsp1_rep	CDS	4577414	4577629	.	-	0	Parent=Os06t0190550-00
Chr06	irgsp1_rep	three_prime_UTR	4577367	4577413	.	-	.	Parent=Os06t0190550-00
Chr06	irgsp1_rep	mRNA	4587987	4591068	.	-	.	ID=Os06t0190700-00;Name=Os06t0190700-00;Locus_id=Os06g0190700;Oryzabase Gene Symbol Synonym(s)=OsGLR4.8;Oryzabase Gene Name Synonym(s)=Glutamate receptor homolog 4.8;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B8B3N1 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Cellular Component: outer membrane-bounded periplasmic space (GO:0030288),Molecular Function: ionotropic glutamate receptor activity (GO:0004970),Molecular Function: transporter activity (GO:0005215),Molecular Function: extracellular-glutamate-gated ion channel activity (GO:0005234);InterPro=Ionotropic glutamate receptor (IPR001320),Extracellular solute-binding protein%2C family 3 (IPR001638);Oryzabase=15513;TENOR=Os06t0190700-00;KEGG=Os06t0190700-00
Chr06	irgsp1_rep	CDS	4590915	4591068	.	-	0	Parent=Os06t0190700-00
Chr06	irgsp1_rep	CDS	4589724	4589977	.	-	2	Parent=Os06t0190700-00
Chr06	irgsp1_rep	CDS	4589328	4589643	.	-	0	Parent=Os06t0190700-00
Chr06	irgsp1_rep	CDS	4588810	4589222	.	-	2	Parent=Os06t0190700-00
Chr06	irgsp1_rep	CDS	4587987	4588478	.	-	0	Parent=Os06t0190700-00
Chr06	irgsp1_rep	mRNA	4593916	4597945	.	-	.	ID=Os06t0190800-01;Name=Os06t0190800-01;Locus_id=Os06g0190800;Oryzabase Gene Symbol Synonym(s)=OsGLR4.9%2C GLR4.9%2C OsGLR1.3%2C GLR1.3;Oryzabase Gene Name Synonym(s)=Glutamate receptor homolog 4.9%2C GLUTAMATE RECEPTOR-LIKE 1.3;Note=Similar to Glutamate receptor.;Transcript_evidence=AK103393 (DDBJ%2C Best hit);ORF_evidence=B9FRY0 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Cellular Component: outer membrane-bounded periplasmic space (GO:0030288),Molecular Function: ionotropic glutamate receptor activity (GO:0004970),Molecular Function: transporter activity (GO:0005215),Molecular Function: extracellular-glutamate-gated ion channel activity (GO:0005234);InterPro=Ionotropic glutamate receptor (IPR001320),Extracellular solute-binding protein%2C family 3 (IPR001638),Extracellular ligand-binding receptor (IPR001828),Ionotropic glutamate receptor%2C plant (IPR017103);NIAS_FLcDNA=J033127M10;Oryzabase=15514;TENOR=Os06t0190800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	4597686	4597945	.	-	.	Parent=Os06t0190800-01
Chr06	irgsp1_rep	CDS	4597661	4597685	.	-	0	Parent=Os06t0190800-01
Chr06	irgsp1_rep	CDS	4595805	4597150	.	-	2	Parent=Os06t0190800-01
Chr06	irgsp1_rep	CDS	4595391	4595703	.	-	0	Parent=Os06t0190800-01
Chr06	irgsp1_rep	CDS	4594754	4595160	.	-	2	Parent=Os06t0190800-01
Chr06	irgsp1_rep	CDS	4594294	4594665	.	-	0	Parent=Os06t0190800-01
Chr06	irgsp1_rep	three_prime_UTR	4593916	4594293	.	-	.	Parent=Os06t0190800-01
Chr06	irgsp1_rep	mRNA	4593916	4596848	.	-	.	ID=Os06t0190800-02;Name=Os06t0190800-02;Locus_id=Os06g0190800;Oryzabase Gene Symbol Synonym(s)=OsGLR4.9%2C GLR4.9%2C OsGLR1.3%2C GLR1.3;Oryzabase Gene Name Synonym(s)=Glutamate receptor homolog 4.9%2C GLUTAMATE RECEPTOR-LIKE 1.3;Note=Similar to Glutamate receptor.;Transcript_evidence=AK105437 (DDBJ%2C Best hit);ORF_evidence=B9FRY0 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Cellular Component: outer membrane-bounded periplasmic space (GO:0030288),Molecular Function: ionotropic glutamate receptor activity (GO:0004970),Molecular Function: transporter activity (GO:0005215),Molecular Function: extracellular-glutamate-gated ion channel activity (GO:0005234);InterPro=Ionotropic glutamate receptor (IPR001320),Extracellular solute-binding protein%2C family 3 (IPR001638),Extracellular ligand-binding receptor (IPR001828);NIAS_FLcDNA=001-124-G05;Oryzabase=15514;TENOR=Os06t0190800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	4595805	4596848	.	-	0	Parent=Os06t0190800-02
Chr06	irgsp1_rep	CDS	4595391	4595703	.	-	0	Parent=Os06t0190800-02
Chr06	irgsp1_rep	CDS	4594754	4595160	.	-	2	Parent=Os06t0190800-02
Chr06	irgsp1_rep	CDS	4594294	4594665	.	-	0	Parent=Os06t0190800-02
Chr06	irgsp1_rep	three_prime_UTR	4593916	4594293	.	-	.	Parent=Os06t0190800-02
Chr06	irgsp1_rep	mRNA	4594416	4597153	.	+	.	ID=Os06t0190850-00;Name=Os06t0190850-00;Locus_id=Os06g0190850;Note=Hypothetical protein.;Transcript_evidence=tplb0022c12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0190850-00
Chr06	irgsp1_rep	five_prime_UTR	4594416	4594658	.	+	.	Parent=Os06t0190850-00
Chr06	irgsp1_rep	five_prime_UTR	4594746	4595158	.	+	.	Parent=Os06t0190850-00
Chr06	irgsp1_rep	five_prime_UTR	4595389	4595434	.	+	.	Parent=Os06t0190850-00
Chr06	irgsp1_rep	CDS	4595435	4595705	.	+	0	Parent=Os06t0190850-00
Chr06	irgsp1_rep	CDS	4595800	4595828	.	+	2	Parent=Os06t0190850-00
Chr06	irgsp1_rep	three_prime_UTR	4595829	4597153	.	+	.	Parent=Os06t0190850-00
Chr06	irgsp1_rep	mRNA	4604420	4605034	.	-	.	ID=Os06t0190900-00;Name=Os06t0190900-00;Locus_id=Os06g0190900;Note=Similar to H0418A01.5 protein.;Transcript_evidence=EU950466 (DDBJ);ORF_evidence=Q01J63 (UniProt);TENOR=Os06t0190900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	4604420	4605034	.	-	0	Parent=Os06t0190900-00
Chr06	irgsp1_rep	mRNA	4605976	4606672	.	-	.	ID=Os06t0190950-00;Name=Os06t0190950-00;Locus_id=Os06g0190950;Note=Similar to H0418A01.5 protein.;Transcript_evidence=BT061604 (DDBJ);ORF_evidence=Q01J63 (UniProt);GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Putative harbinger transposase-derived nuclease (IPR006912);TENOR=Os06t0190950-00
Chr06	irgsp1_rep	five_prime_UTR	4606576	4606672	.	-	.	Parent=Os06t0190950-00
Chr06	irgsp1_rep	CDS	4605976	4606575	.	-	0	Parent=Os06t0190950-00
Chr06	irgsp1_rep	mRNA	4612261	4615892	.	+	.	ID=Os06t0191200-01;Name=Os06t0191200-01;Locus_id=Os06g0191200;Note=Similar to zinc ion binding.;Transcript_evidence=AK073349 (DDBJ%2C Best hit);ORF_evidence=NP_564704.2 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RanBP2-type (IPR001876),WLM (IPR013536);NIAS_FLcDNA=J033026I12;TENOR=Os06t0191200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	4612261	4612405	.	+	.	Parent=Os06t0191200-01
Chr06	irgsp1_rep	CDS	4612406	4612563	.	+	0	Parent=Os06t0191200-01
Chr06	irgsp1_rep	CDS	4612712	4612907	.	+	1	Parent=Os06t0191200-01
Chr06	irgsp1_rep	CDS	4613562	4614077	.	+	0	Parent=Os06t0191200-01
Chr06	irgsp1_rep	CDS	4614630	4614818	.	+	0	Parent=Os06t0191200-01
Chr06	irgsp1_rep	three_prime_UTR	4614819	4614844	.	+	.	Parent=Os06t0191200-01
Chr06	irgsp1_rep	three_prime_UTR	4615179	4615459	.	+	.	Parent=Os06t0191200-01
Chr06	irgsp1_rep	three_prime_UTR	4615570	4615892	.	+	.	Parent=Os06t0191200-01
Chr06	irgsp1_rep	mRNA	4616608	4618145	.	+	.	ID=Os06t0191300-01;Name=Os06t0191300-01;Locus_id=Os06g0191300;CGSNL Gene Symbol=MKK5;CGSNL Gene Name=MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5;Oryzabase Gene Symbol Synonym(s)=OsMKK5%2C BUD1%2C OsBUD1;Oryzabase Gene Name Synonym(s)=MAPK kinase 5;Note=Similar to Mitogen-activated protein kinase kinase 4 (Fragment).;Transcript_evidence=AK099769 (DDBJ%2C Best hit);ORF_evidence=Q0MSI2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013095B20;Oryzabase=8834;TENOR=Os06t0191300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	4616608	4616700	.	+	.	Parent=Os06t0191300-01
Chr06	irgsp1_rep	CDS	4616701	4617729	.	+	0	Parent=Os06t0191300-01
Chr06	irgsp1_rep	three_prime_UTR	4617730	4618145	.	+	.	Parent=Os06t0191300-01
Chr06	irgsp1_rep	mRNA	4616632	4618144	.	+	.	ID=Os06t0191300-02;Name=Os06t0191300-02;Locus_id=Os06g0191300;CGSNL Gene Symbol=MKK5;CGSNL Gene Name=MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5;Oryzabase Gene Symbol Synonym(s)=OsMKK5%2C BUD1%2C OsBUD1;Oryzabase Gene Name Synonym(s)=MAPK kinase 5;Note=Similar to Mitogen-activated protein kinase kinase 4 (Fragment).;Transcript_evidence=AK112016 (DDBJ%2C Best hit),AK112002 (DDBJ%2C Best hit);ORF_evidence=Q0MSI2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=006-304-E07,001-035-E11;Oryzabase=8834;TENOR=Os06t0191300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	4616632	4616700	.	+	.	Parent=Os06t0191300-02
Chr06	irgsp1_rep	CDS	4616701	4616808	.	+	0	Parent=Os06t0191300-02
Chr06	irgsp1_rep	CDS	4616893	4617729	.	+	0	Parent=Os06t0191300-02
Chr06	irgsp1_rep	three_prime_UTR	4617730	4618144	.	+	.	Parent=Os06t0191300-02
Chr06	irgsp1_rep	mRNA	4624188	4625199	.	+	.	ID=Os06t0191500-01;Name=Os06t0191500-01;Locus_id=Os06g0191500;CGSNL Gene Symbol=MPKK5;CGSNL Gene Name=MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5;Oryzabase Gene Symbol Synonym(s)=OsMPKK5;Note=Similar to MAP kinase kinase.;Transcript_evidence=AK111112 (DDBJ%2C Best hit);ORF_evidence=B0ZBJ2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Tyrosine-protein kinase%2C active site (IPR008266),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-176-B01;Oryzabase=23076;TENOR=Os06t0191500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	4624188	4624231	.	+	.	Parent=Os06t0191500-01
Chr06	irgsp1_rep	CDS	4624232	4625152	.	+	0	Parent=Os06t0191500-01
Chr06	irgsp1_rep	three_prime_UTR	4625153	4625199	.	+	.	Parent=Os06t0191500-01
Chr06	irgsp1_rep	mRNA	4631049	4632543	.	+	.	ID=Os06t0191700-00;Name=Os06t0191700-00;Locus_id=Os06g0191700;Note=Similar to CytoChrome P450.;Transcript_evidence=ab initio prediction;ORF_evidence=Q94EV6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os06t0191700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	4631049	4632029	.	+	0	Parent=Os06t0191700-00
Chr06	irgsp1_rep	CDS	4632112	4632543	.	+	0	Parent=Os06t0191700-00
Chr06	irgsp1_rep	mRNA	4633666	4635469	.	-	.	ID=Os06t0191800-01;Name=Os06t0191800-01;Locus_id=Os06g0191800;CGSNL Gene Symbol=CYP709C11;CGSNL Gene Name=CYTOCHROME P450 709C11;Oryzabase Gene Symbol Synonym(s)=OsCYP709C11;Oryzabase Gene Name Synonym(s)=CytoChrome P450 709C11;Note=CytoChrome P450 family protein.;Transcript_evidence=AK106632 (DDBJ%2C Best hit);ORF_evidence=Q94EV6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=002-113-D03;Oryzabase=21843;Expression=AK106632;TENOR=Os06t0191800-01;KEGG=Os06t0191800-01 (EC:1.14.15.3)
Chr06	irgsp1_rep	five_prime_UTR	4635428	4635469	.	-	.	Parent=Os06t0191800-01
Chr06	irgsp1_rep	CDS	4634273	4635427	.	-	0	Parent=Os06t0191800-01
Chr06	irgsp1_rep	CDS	4633759	4634190	.	-	0	Parent=Os06t0191800-01
Chr06	irgsp1_rep	three_prime_UTR	4633666	4633758	.	-	.	Parent=Os06t0191800-01
Chr06	irgsp1_rep	mRNA	4641462	4644922	.	-	.	ID=Os06t0191900-00;Name=Os06t0191900-00;Locus_id=Os06g0191900;CGSNL Gene Symbol=RLCK201;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 201;Oryzabase Gene Symbol Synonym(s)=OsRLCK201;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 201;Note=Similar to Serine threonine kinase.;Transcript_evidence=BT085093 (DDBJ);ORF_evidence=Q9ATX1 (UniProt);GO=Biological Process: response to stress (GO:0006950);InterPro=UspA (IPR006016);Oryzabase=18898;TENOR=Os06t0191900-00;KEGG=Os06t0191900-00
Chr06	irgsp1_rep	five_prime_UTR	4644874	4644922	.	-	.	Parent=Os06t0191900-00
Chr06	irgsp1_rep	CDS	4644698	4644873	.	-	0	Parent=Os06t0191900-00
Chr06	irgsp1_rep	CDS	4643796	4643890	.	-	1	Parent=Os06t0191900-00
Chr06	irgsp1_rep	CDS	4643033	4643704	.	-	2	Parent=Os06t0191900-00
Chr06	irgsp1_rep	CDS	4641462	4642954	.	-	2	Parent=Os06t0191900-00
Chr06	irgsp1_rep	mRNA	4640794	4645100	.	+	.	ID=Os06t0192000-01;Name=Os06t0192000-01;Locus_id=Os06g0192000;Note=Hypothetical gene.;Transcript_evidence=AK240646 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023003H01;TENOR=Os06t0192000-01;KEGG=Os06t0192000-01
Chr06	irgsp1_rep	five_prime_UTR	4640794	4641170	.	+	.	Parent=Os06t0192000-01
Chr06	irgsp1_rep	five_prime_UTR	4641620	4642610	.	+	.	Parent=Os06t0192000-01
Chr06	irgsp1_rep	CDS	4642611	4642954	.	+	0	Parent=Os06t0192000-01
Chr06	irgsp1_rep	CDS	4643033	4643147	.	+	1	Parent=Os06t0192000-01
Chr06	irgsp1_rep	three_prime_UTR	4643148	4643704	.	+	.	Parent=Os06t0192000-01
Chr06	irgsp1_rep	three_prime_UTR	4643796	4643889	.	+	.	Parent=Os06t0192000-01
Chr06	irgsp1_rep	three_prime_UTR	4644701	4645100	.	+	.	Parent=Os06t0192000-01
Chr06	irgsp1_rep	mRNA	4642139	4644107	.	+	.	ID=Os06t0192000-02;Name=Os06t0192000-02;Locus_id=Os06g0192000;Note=Hypothetical protein.;Transcript_evidence=AK106844 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-116-H12;Expression=AK106844;TENOR=Os06t0192000-02;KEGG=Os06t0192000-02
Chr06	irgsp1_rep	five_prime_UTR	4642139	4642610	.	+	.	Parent=Os06t0192000-02
Chr06	irgsp1_rep	CDS	4642611	4642994	.	+	0	Parent=Os06t0192000-02
Chr06	irgsp1_rep	three_prime_UTR	4642995	4644107	.	+	.	Parent=Os06t0192000-02
Chr06	irgsp1_rep	mRNA	4647943	4648296	.	-	.	ID=Os06t0192001-00;Name=Os06t0192001-00;Locus_id=Os06g0192001;Note=Hypothetical protein.;Transcript_evidence=BT054641 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0192001-00
Chr06	irgsp1_rep	five_prime_UTR	4648296	4648296	.	-	.	Parent=Os06t0192001-00
Chr06	irgsp1_rep	CDS	4647943	4648295	.	-	0	Parent=Os06t0192001-00
Chr06	irgsp1_rep	mRNA	4648131	4649391	.	+	.	ID=Os06t0192100-00;Name=Os06t0192100-00;Locus_id=Os06g0192100;Oryzabase Gene Symbol Synonym(s)=UGT;Oryzabase Gene Name Synonym(s)=UDP-glycosyltransferase%2C UDP-glycosyl transferase;Note=Similar to UDP-glucose flavonoid-3-O-glucosyltransferase.;Transcript_evidence=ab initio prediction;ORF_evidence=Q19R31 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);Oryzabase=20377;TENOR=Os06t0192100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	4648131	4648431	.	+	0	Parent=Os06t0192100-00
Chr06	irgsp1_rep	CDS	4648505	4649391	.	+	2	Parent=Os06t0192100-00
Chr06	irgsp1_rep	mRNA	4650896	4652059	.	+	.	ID=Os06t0192300-00;Name=Os06t0192300-00;Locus_id=Os06g0192300;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q69TI9 (UniProt);TENOR=Os06t0192300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	4650896	4651338	.	+	0	Parent=Os06t0192300-00
Chr06	irgsp1_rep	CDS	4652005	4652059	.	+	1	Parent=Os06t0192300-00
Chr06	irgsp1_rep	mRNA	4653460	4655652	.	-	.	ID=Os06t0192400-01;Name=Os06t0192400-01;Locus_id=Os06g0192400;Note=Glycosyl transferase%2C family 31 protein.;Transcript_evidence=AK108798 (DDBJ%2C Best hit);ORF_evidence=Q5GAS2 (UniProt);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Glycosyl transferase%2C family 31 (IPR002659);NIAS_FLcDNA=002-151-C05;Expression=AK108798;TENOR=Os06t0192400-01;KEGG=Os06t0192400-01
Chr06	irgsp1_rep	five_prime_UTR	4655556	4655652	.	-	.	Parent=Os06t0192400-01
Chr06	irgsp1_rep	CDS	4654799	4655555	.	-	0	Parent=Os06t0192400-01
Chr06	irgsp1_rep	CDS	4653574	4653809	.	-	2	Parent=Os06t0192400-01
Chr06	irgsp1_rep	three_prime_UTR	4653460	4653573	.	-	.	Parent=Os06t0192400-01
Chr06	irgsp1_rep	mRNA	4659870	4667054	.	+	.	ID=Os06t0192500-01;Name=Os06t0192500-01;Locus_id=Os06g0192500;Note=DEAD-like helicase%2C N-terminal domain containing protein.;Transcript_evidence=AK067746 (DDBJ%2C Best hit);ORF_evidence=NP_001147775.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C ATP-dependent%2C DEAH-box type%2C conserved site (IPR002464),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J013120G22;Expression=AK067746;TENOR=Os06t0192500-01;KEGG=Os06t0192500-01 (EC:3.6.4.13)
Chr06	irgsp1_rep	five_prime_UTR	4659870	4660148	.	+	.	Parent=Os06t0192500-01
Chr06	irgsp1_rep	CDS	4660149	4660204	.	+	0	Parent=Os06t0192500-01
Chr06	irgsp1_rep	CDS	4660311	4660360	.	+	1	Parent=Os06t0192500-01
Chr06	irgsp1_rep	CDS	4660453	4660533	.	+	2	Parent=Os06t0192500-01
Chr06	irgsp1_rep	CDS	4661045	4661261	.	+	2	Parent=Os06t0192500-01
Chr06	irgsp1_rep	CDS	4662403	4662790	.	+	1	Parent=Os06t0192500-01
Chr06	irgsp1_rep	CDS	4663013	4663216	.	+	0	Parent=Os06t0192500-01
Chr06	irgsp1_rep	CDS	4664357	4664521	.	+	0	Parent=Os06t0192500-01
Chr06	irgsp1_rep	three_prime_UTR	4664522	4664636	.	+	.	Parent=Os06t0192500-01
Chr06	irgsp1_rep	three_prime_UTR	4664711	4664769	.	+	.	Parent=Os06t0192500-01
Chr06	irgsp1_rep	three_prime_UTR	4664915	4665146	.	+	.	Parent=Os06t0192500-01
Chr06	irgsp1_rep	three_prime_UTR	4665713	4665915	.	+	.	Parent=Os06t0192500-01
Chr06	irgsp1_rep	three_prime_UTR	4666257	4666391	.	+	.	Parent=Os06t0192500-01
Chr06	irgsp1_rep	three_prime_UTR	4666550	4667054	.	+	.	Parent=Os06t0192500-01
Chr06	irgsp1_rep	mRNA	4663089	4666890	.	+	.	ID=Os06t0192500-02;Name=Os06t0192500-02;Locus_id=Os06g0192500;Note=Similar to ATP-dependent RNA helicase DHX8.;Transcript_evidence=AK059545 (DDBJ%2C Best hit);ORF_evidence=NP_001147775.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524);InterPro=Helicase%2C C-terminal (IPR001650),Helicase-associated domain (IPR007502),Domain of unknown function DUF1605 (IPR011709);NIAS_FLcDNA=001-029-F04;Expression=AK059545;TENOR=Os06t0192500-02;KEGG=Os06t0192500-02 (EC:3.6.4.13)
Chr06	irgsp1_rep	five_prime_UTR	4663089	4663090	.	+	.	Parent=Os06t0192500-02
Chr06	irgsp1_rep	CDS	4663091	4663216	.	+	0	Parent=Os06t0192500-02
Chr06	irgsp1_rep	CDS	4664357	4664517	.	+	0	Parent=Os06t0192500-02
Chr06	irgsp1_rep	CDS	4664584	4664769	.	+	1	Parent=Os06t0192500-02
Chr06	irgsp1_rep	CDS	4664915	4665146	.	+	1	Parent=Os06t0192500-02
Chr06	irgsp1_rep	CDS	4665713	4665915	.	+	0	Parent=Os06t0192500-02
Chr06	irgsp1_rep	CDS	4666257	4666391	.	+	1	Parent=Os06t0192500-02
Chr06	irgsp1_rep	CDS	4666550	4666733	.	+	1	Parent=Os06t0192500-02
Chr06	irgsp1_rep	three_prime_UTR	4666734	4666890	.	+	.	Parent=Os06t0192500-02
Chr06	irgsp1_rep	mRNA	4667492	4670888	.	+	.	ID=Os06t0192600-01;Name=Os06t0192600-01;Locus_id=Os06g0192600;CGSNL Gene Symbol=RPT1A;CGSNL Gene Name=19S REGULATORY PARTICLE ATPASE SUBUNIT 1A;Oryzabase Gene Symbol Synonym(s)=OsRpt1a%2C Rpt1a;Oryzabase Gene Name Synonym(s)=19S regulatory particle ATPase subunit 1a%2C RP triple A-ATPase 1a;Note=26S proteasome regulatory particle triple-A ATPase subunit1 (26S protease regulatory subunit 7).;Transcript_evidence=AK070538 (DDBJ%2C Best hit),AK061876 (DDBJ%2C Best hit),AK100060 (DDBJ%2C Best hit),AK103801 (DDBJ%2C Best hit);ORF_evidence=Q9FXT9 (UniProt);GO=Biological Process: protein catabolic process (GO:0030163),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960),26S proteasome subunit P45 (IPR005937);NIAS_FLcDNA=J023060N22,001-041-A12,J013159J17,J033146D17;Oryzabase=20553;TENOR=Os06t0192600-01
Chr06	irgsp1_rep	five_prime_UTR	4667492	4667604	.	+	.	Parent=Os06t0192600-01
Chr06	irgsp1_rep	CDS	4667605	4667691	.	+	0	Parent=Os06t0192600-01
Chr06	irgsp1_rep	CDS	4668225	4668306	.	+	0	Parent=Os06t0192600-01
Chr06	irgsp1_rep	CDS	4668419	4668510	.	+	2	Parent=Os06t0192600-01
Chr06	irgsp1_rep	CDS	4668624	4668701	.	+	0	Parent=Os06t0192600-01
Chr06	irgsp1_rep	CDS	4668818	4668879	.	+	0	Parent=Os06t0192600-01
Chr06	irgsp1_rep	CDS	4669455	4670176	.	+	1	Parent=Os06t0192600-01
Chr06	irgsp1_rep	CDS	4670298	4670455	.	+	2	Parent=Os06t0192600-01
Chr06	irgsp1_rep	three_prime_UTR	4670456	4670888	.	+	.	Parent=Os06t0192600-01
Chr06	irgsp1_rep	mRNA	4669544	4670449	.	-	.	ID=Os06t0192650-00;Name=Os06t0192650-00;Locus_id=Os06g0192650;Note=Non-protein coding transcript.;Transcript_evidence=tplb0035c03 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os06t0192650-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	exon	4670296	4670449	.	-	.	Parent=Os06t0192650-00
Chr06	irgsp1_rep	exon	4669544	4670173	.	-	.	Parent=Os06t0192650-00
Chr06	irgsp1_rep	mRNA	4671606	4671667	.	-	.	ID=Os06t0192676-00;Name=Os06t0192676-00;Locus_id=Os06g0192676;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0192676-00
Chr06	irgsp1_rep	exon	4671606	4671667	.	-	.	Parent=Os06t0192676-00
Chr06	irgsp1_rep	mRNA	4678838	4680111	.	+	.	ID=Os06t0192800-01;Name=Os06t0192800-01;Locus_id=Os06g0192800;Note=Similar to RING-H2 finger protein ATL1R (RING-H2 finger protein ATL8).;Transcript_evidence=AK070038 (DDBJ%2C Best hit);ORF_evidence=Q5GAS1 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J023035D03;Expression=AK070038;TENOR=Os06t0192800-01;KEGG=Os06t0192800-01
Chr06	irgsp1_rep	five_prime_UTR	4678838	4678910	.	+	.	Parent=Os06t0192800-01
Chr06	irgsp1_rep	CDS	4678911	4679876	.	+	0	Parent=Os06t0192800-01
Chr06	irgsp1_rep	three_prime_UTR	4679877	4680111	.	+	.	Parent=Os06t0192800-01
Chr06	irgsp1_rep	mRNA	4687049	4690108	.	+	.	ID=Os06t0192900-01;Name=Os06t0192900-01;Locus_id=Os06g0192900;Note=Similar to tac7077.;Transcript_evidence=AK103169 (DDBJ%2C Best hit);ORF_evidence=NP_001151136.1 (RefSeq);GO=Molecular Function: phosphatase activity (GO:0016791);InterPro=5&apos%3B(3&apos%3B)-deoxyribonucleotidase (IPR010708),HAD-like domain (IPR023214);NIAS_FLcDNA=J033121F18;Expression=AK103169;TENOR=Os06t0192900-01;KEGG=Os06t0192900-01
Chr06	irgsp1_rep	five_prime_UTR	4687049	4687193	.	+	.	Parent=Os06t0192900-01
Chr06	irgsp1_rep	five_prime_UTR	4687273	4687339	.	+	.	Parent=Os06t0192900-01
Chr06	irgsp1_rep	five_prime_UTR	4687416	4687476	.	+	.	Parent=Os06t0192900-01
Chr06	irgsp1_rep	CDS	4687477	4687963	.	+	0	Parent=Os06t0192900-01
Chr06	irgsp1_rep	CDS	4688230	4688327	.	+	2	Parent=Os06t0192900-01
Chr06	irgsp1_rep	CDS	4688856	4688880	.	+	0	Parent=Os06t0192900-01
Chr06	irgsp1_rep	CDS	4688992	4689112	.	+	2	Parent=Os06t0192900-01
Chr06	irgsp1_rep	CDS	4689205	4689339	.	+	1	Parent=Os06t0192900-01
Chr06	irgsp1_rep	CDS	4689575	4689785	.	+	1	Parent=Os06t0192900-01
Chr06	irgsp1_rep	three_prime_UTR	4689786	4690108	.	+	.	Parent=Os06t0192900-01
Chr06	irgsp1_rep	mRNA	4687367	4688078	.	-	.	ID=Os06t0192950-00;Name=Os06t0192950-00;Locus_id=Os06g0192950;Note=Hypothetical protein.;Transcript_evidence=EU949942 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0192950-00
Chr06	irgsp1_rep	five_prime_UTR	4687825	4688078	.	-	.	Parent=Os06t0192950-00
Chr06	irgsp1_rep	CDS	4687480	4687824	.	-	0	Parent=Os06t0192950-00
Chr06	irgsp1_rep	three_prime_UTR	4687367	4687479	.	-	.	Parent=Os06t0192950-00
Chr06	irgsp1_rep	mRNA	4690951	4695231	.	-	.	ID=Os06t0193000-01;Name=Os06t0193000-01;Locus_id=Os06g0193000;CGSNL Gene Symbol=UBC46;CGSNL Gene Name=UBIQUITIN-CONJUGATING ENZYME 46;Oryzabase Gene Symbol Synonym(s)=OsUBC46;Oryzabase Gene Name Synonym(s)=Ubiquitin-conjugating enzyme 46;Note=Similar to Ubiquitin conjugating enzyme 2.;Transcript_evidence=AK065085 (DDBJ%2C Best hit);ORF_evidence=NP_001149627.1 (RefSeq);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135);NIAS_FLcDNA=J013001L17;Oryzabase=19579;Expression=AK065085;TENOR=Os06t0193000-01;KEGG=Os06t0193000-01 (EC:6.3.2.19)
Chr06	irgsp1_rep	five_prime_UTR	4694970	4695231	.	-	.	Parent=Os06t0193000-01
Chr06	irgsp1_rep	CDS	4694913	4694969	.	-	0	Parent=Os06t0193000-01
Chr06	irgsp1_rep	CDS	4694754	4694808	.	-	0	Parent=Os06t0193000-01
Chr06	irgsp1_rep	CDS	4693226	4693264	.	-	2	Parent=Os06t0193000-01
Chr06	irgsp1_rep	CDS	4693047	4693110	.	-	2	Parent=Os06t0193000-01
Chr06	irgsp1_rep	CDS	4692794	4692855	.	-	1	Parent=Os06t0193000-01
Chr06	irgsp1_rep	CDS	4692623	4692662	.	-	2	Parent=Os06t0193000-01
Chr06	irgsp1_rep	CDS	4692205	4692232	.	-	1	Parent=Os06t0193000-01
Chr06	irgsp1_rep	CDS	4691696	4691787	.	-	0	Parent=Os06t0193000-01
Chr06	irgsp1_rep	CDS	4691122	4691407	.	-	1	Parent=Os06t0193000-01
Chr06	irgsp1_rep	three_prime_UTR	4690951	4691121	.	-	.	Parent=Os06t0193000-01
Chr06	irgsp1_rep	mRNA	4690969	4693084	.	-	.	ID=Os06t0193000-02;Name=Os06t0193000-02;Locus_id=Os06g0193000;CGSNL Gene Symbol=UBC46;CGSNL Gene Name=UBIQUITIN-CONJUGATING ENZYME 46;Oryzabase Gene Symbol Synonym(s)=OsUBC46;Oryzabase Gene Name Synonym(s)=Ubiquitin-conjugating enzyme 46;Note=Similar to ubiquitin-conjugating enzyme E2 J2.;Transcript_evidence=AK062230 (DDBJ%2C Best hit);ORF_evidence=NP_001149627.1 (RefSeq);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135);NIAS_FLcDNA=001-047-D04;Oryzabase=19579;Expression=AK062230;TENOR=Os06t0193000-02;KEGG=Os06t0193000-02 (EC:6.3.2.19)
Chr06	irgsp1_rep	CDS	4693047	4693084	.	-	0	Parent=Os06t0193000-02
Chr06	irgsp1_rep	CDS	4692794	4692855	.	-	1	Parent=Os06t0193000-02
Chr06	irgsp1_rep	CDS	4692623	4692662	.	-	2	Parent=Os06t0193000-02
Chr06	irgsp1_rep	CDS	4692205	4692232	.	-	1	Parent=Os06t0193000-02
Chr06	irgsp1_rep	CDS	4691696	4691787	.	-	0	Parent=Os06t0193000-02
Chr06	irgsp1_rep	CDS	4691122	4691407	.	-	1	Parent=Os06t0193000-02
Chr06	irgsp1_rep	three_prime_UTR	4690969	4691121	.	-	.	Parent=Os06t0193000-02
Chr06	irgsp1_rep	mRNA	4700512	4703042	.	+	.	ID=Os06t0193200-01;Name=Os06t0193200-01;Locus_id=Os06g0193200;CGSNL Gene Symbol=PME19;CGSNL Gene Name=PECTIN METHYLESTERASE 19;Oryzabase Gene Symbol Synonym(s)=OsPME19;Oryzabase Gene Name Synonym(s)=pectin methylesterase 19;Note=Similar to Pectin methylesterase 8 (Fragment).;Transcript_evidence=AK287720 (DDBJ%2C Best hit);ORF_evidence=B9RR23 (UniProt);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectinesterase inhibitor (IPR006501),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=J065136H22;Oryzabase=13183;TENOR=Os06t0193200-01;KEGG=Os06t0193200-01
Chr06	irgsp1_rep	five_prime_UTR	4700512	4700551	.	+	.	Parent=Os06t0193200-01
Chr06	irgsp1_rep	CDS	4700552	4701614	.	+	0	Parent=Os06t0193200-01
Chr06	irgsp1_rep	CDS	4702252	4702946	.	+	2	Parent=Os06t0193200-01
Chr06	irgsp1_rep	three_prime_UTR	4702947	4703042	.	+	.	Parent=Os06t0193200-01
Chr06	irgsp1_rep	mRNA	4704085	4704882	.	-	.	ID=Os06t0193300-01;Name=Os06t0193300-01;Locus_id=Os06g0193300;Note=Conserved hypothetical protein.;Transcript_evidence=AK062548 (DDBJ%2C Best hit);ORF_evidence=A3B979 (UniProt);NIAS_FLcDNA=001-104-G10;Expression=AK062548;TENOR=Os06t0193300-01;KEGG=Os06t0193300-01
Chr06	irgsp1_rep	five_prime_UTR	4704860	4704882	.	-	.	Parent=Os06t0193300-01
Chr06	irgsp1_rep	CDS	4704707	4704859	.	-	0	Parent=Os06t0193300-01
Chr06	irgsp1_rep	CDS	4704461	4704585	.	-	0	Parent=Os06t0193300-01
Chr06	irgsp1_rep	CDS	4704200	4704305	.	-	1	Parent=Os06t0193300-01
Chr06	irgsp1_rep	three_prime_UTR	4704085	4704199	.	-	.	Parent=Os06t0193300-01
Chr06	irgsp1_rep	mRNA	4709766	4715552	.	-	.	ID=Os06t0193400-01;Name=Os06t0193400-01;Locus_id=Os06g0193400;CGSNL Gene Symbol=PTF1;CGSNL Gene Name=PI STARVATION-INDUCED TRANSCRIPTION FACTOR-1;Oryzabase Gene Symbol Synonym(s)=OsPTF1%2C OsbHLH096;Oryzabase Gene Name Synonym(s)=Pi starvation-induced transcription factor-1%2C bHLH transcription factor PTF1%2C basic helix-loop-helix protein 096;Note=Similar to Helix-loop-helix protein homolog.;Transcript_evidence=AK065667 (DDBJ%2C Best hit);ORF_evidence=B5AEK3 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J013042L14;Oryzabase=6284;Expression=AK065667;TENOR=Os06t0193400-01;KEGG=Os06t0193400-01
Chr06	irgsp1_rep	five_prime_UTR	4715268	4715552	.	-	.	Parent=Os06t0193400-01
Chr06	irgsp1_rep	five_prime_UTR	4713457	4713602	.	-	.	Parent=Os06t0193400-01
Chr06	irgsp1_rep	CDS	4712809	4713456	.	-	0	Parent=Os06t0193400-01
Chr06	irgsp1_rep	CDS	4712632	4712724	.	-	0	Parent=Os06t0193400-01
Chr06	irgsp1_rep	CDS	4712438	4712530	.	-	0	Parent=Os06t0193400-01
Chr06	irgsp1_rep	CDS	4712184	4712345	.	-	0	Parent=Os06t0193400-01
Chr06	irgsp1_rep	CDS	4711997	4712062	.	-	0	Parent=Os06t0193400-01
Chr06	irgsp1_rep	CDS	4711242	4711307	.	-	0	Parent=Os06t0193400-01
Chr06	irgsp1_rep	CDS	4711081	4711149	.	-	0	Parent=Os06t0193400-01
Chr06	irgsp1_rep	CDS	4710096	4710335	.	-	0	Parent=Os06t0193400-01
Chr06	irgsp1_rep	three_prime_UTR	4709766	4710095	.	-	.	Parent=Os06t0193400-01
Chr06	irgsp1_rep	mRNA	4709744	4713395	.	-	.	ID=Os06t0193400-02;Name=Os06t0193400-02;Locus_id=Os06g0193400;CGSNL Gene Symbol=PTF1;CGSNL Gene Name=PI STARVATION-INDUCED TRANSCRIPTION FACTOR-1;Oryzabase Gene Symbol Synonym(s)=OsPTF1%2C OsbHLH096;Oryzabase Gene Name Synonym(s)=Pi starvation-induced transcription factor-1%2C bHLH transcription factor PTF1%2C basic helix-loop-helix protein 096;Note=Similar to BHLH transcription factor.;Transcript_evidence=AK062127 (DDBJ%2C Best hit);ORF_evidence=B5AEK3 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=001-045-D10;Oryzabase=6284;Expression=AK062127;TENOR=Os06t0193400-02;KEGG=Os06t0193400-02
Chr06	irgsp1_rep	five_prime_UTR	4713334	4713395	.	-	.	Parent=Os06t0193400-02
Chr06	irgsp1_rep	CDS	4713207	4713333	.	-	0	Parent=Os06t0193400-02
Chr06	irgsp1_rep	CDS	4712809	4712975	.	-	2	Parent=Os06t0193400-02
Chr06	irgsp1_rep	CDS	4712632	4712724	.	-	0	Parent=Os06t0193400-02
Chr06	irgsp1_rep	CDS	4712438	4712530	.	-	0	Parent=Os06t0193400-02
Chr06	irgsp1_rep	CDS	4712184	4712345	.	-	0	Parent=Os06t0193400-02
Chr06	irgsp1_rep	CDS	4711997	4712062	.	-	0	Parent=Os06t0193400-02
Chr06	irgsp1_rep	CDS	4711242	4711307	.	-	0	Parent=Os06t0193400-02
Chr06	irgsp1_rep	CDS	4711081	4711149	.	-	0	Parent=Os06t0193400-02
Chr06	irgsp1_rep	CDS	4710096	4710335	.	-	0	Parent=Os06t0193400-02
Chr06	irgsp1_rep	three_prime_UTR	4709744	4710095	.	-	.	Parent=Os06t0193400-02
Chr06	irgsp1_rep	mRNA	4731330	4733786	.	+	.	ID=Os06t0194000-01;Name=Os06t0194000-01;Locus_id=Os06g0194000;RAP-DB Gene Symbol Synonym(s)=ERF71%2C OsERF#071%2C OsERF071%2C OsERF71%2C AP2/EREBP#124%2C AP2/EREBP124%2C OsERF15;RAP-DB Gene Name Synonym(s)=ETHYLENE RESPONSE FACTOR 71%2C ethylene response factor 71%2C APETALA2/ethylene-responsive element binding protein 124%2C ethylene response factor 15;CGSNL Gene Symbol=ERF71;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 71;Oryzabase Gene Symbol Synonym(s)=OsERF#071%2C OsERF071%2C OsERF71%2C AP2/EREBP#124%2C AP2/EREBP124%2C OsERF15;Oryzabase Gene Name Synonym(s)=ethylene response factor 71%2C APETALA2/ethylene-responsive element binding protein 124%2C ethylene response factor 15;Note=AP2/ERF transcription factor%2C Drought resistance%2C Control of lignin biosynthesis;Transcript_evidence=AK060742;ORF_evidence=Q69Y47;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700);InterPro=DNA-binding domain (IPR016177),AP2/ERF domain (IPR001471);NIAS_FLcDNA=001-032-E01;Manual Curation=September 5%2C 2016;Literature_PMID=27382137;Oryzabase=10583;Expression=AK060742;TENOR=Os06t0194000-01;KEGG=Os06t0194000-01
Chr06	irgsp1_rep	five_prime_UTR	4731330	4731449	.	+	.	Parent=Os06t0194000-01
Chr06	irgsp1_rep	CDS	4731450	4731714	.	+	0	Parent=Os06t0194000-01
Chr06	irgsp1_rep	CDS	4732496	4733319	.	+	2	Parent=Os06t0194000-01
Chr06	irgsp1_rep	three_prime_UTR	4733320	4733366	.	+	.	Parent=Os06t0194000-01
Chr06	irgsp1_rep	three_prime_UTR	4733452	4733786	.	+	.	Parent=Os06t0194000-01
Chr06	irgsp1_rep	mRNA	4731370	4733911	.	+	.	ID=Os06t0194000-02;Name=Os06t0194000-02;Locus_id=Os06g0194000;CGSNL Gene Symbol=ERF71;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 71;Oryzabase Gene Symbol Synonym(s)=OsERF#071%2C OsERF071%2C OsERF71%2C AP2/EREBP#124%2C AP2/EREBP124%2C OsERF15;Oryzabase Gene Name Synonym(s)=ethylene response factor 71%2C APETALA2/ethylene-responsive element binding protein 124%2C ethylene response factor 15;Note=Similar to Ethylene-responsive transcription factor 3 (Ethylene-responsive element binding factor 3 homolog) (EREBP-5) (NtERF5).;Transcript_evidence=AK069833 (DDBJ%2C Best hit);ORF_evidence=Q9SP16 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J023031B06;Oryzabase=10583;Expression=AK069833;TENOR=Os06t0194000-02;KEGG=Os06t0194000-02
Chr06	irgsp1_rep	five_prime_UTR	4731370	4731449	.	+	.	Parent=Os06t0194000-02
Chr06	irgsp1_rep	CDS	4731450	4731714	.	+	0	Parent=Os06t0194000-02
Chr06	irgsp1_rep	CDS	4732496	4733319	.	+	2	Parent=Os06t0194000-02
Chr06	irgsp1_rep	three_prime_UTR	4733320	4733366	.	+	.	Parent=Os06t0194000-02
Chr06	irgsp1_rep	three_prime_UTR	4733452	4733911	.	+	.	Parent=Os06t0194000-02
Chr06	irgsp1_rep	mRNA	4756439	4757157	.	-	.	ID=Os06t0194200-01;Name=Os06t0194200-01;Locus_id=Os06g0194200;Note=Conserved hypothetical protein.;Transcript_evidence=AK111269 (DDBJ%2C Best hit);ORF_evidence=B9FRY9 (UniProt);NIAS_FLcDNA=002-180-F10;TENOR=Os06t0194200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	4757087	4757157	.	-	.	Parent=Os06t0194200-01
Chr06	irgsp1_rep	CDS	4756844	4757086	.	-	0	Parent=Os06t0194200-01
Chr06	irgsp1_rep	three_prime_UTR	4756439	4756843	.	-	.	Parent=Os06t0194200-01
Chr06	irgsp1_rep	mRNA	4762004	4764420	.	+	.	ID=Os06t0194400-01;Name=Os06t0194400-01;Locus_id=Os06g0194400;Note=Transcriptional factor B3 family protein.;Transcript_evidence=AK102980 (DDBJ%2C Best hit);ORF_evidence=NP_001151065.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=J033115O10;Expression=AK102980;TENOR=Os06t0194400-01;KEGG=Os06t0194400-01
Chr06	irgsp1_rep	five_prime_UTR	4762004	4762016	.	+	.	Parent=Os06t0194400-01
Chr06	irgsp1_rep	CDS	4762017	4762166	.	+	0	Parent=Os06t0194400-01
Chr06	irgsp1_rep	CDS	4762291	4762401	.	+	0	Parent=Os06t0194400-01
Chr06	irgsp1_rep	CDS	4762518	4762549	.	+	0	Parent=Os06t0194400-01
Chr06	irgsp1_rep	CDS	4762652	4762820	.	+	1	Parent=Os06t0194400-01
Chr06	irgsp1_rep	CDS	4762911	4763117	.	+	0	Parent=Os06t0194400-01
Chr06	irgsp1_rep	CDS	4763501	4763545	.	+	0	Parent=Os06t0194400-01
Chr06	irgsp1_rep	three_prime_UTR	4763546	4763580	.	+	.	Parent=Os06t0194400-01
Chr06	irgsp1_rep	three_prime_UTR	4764143	4764420	.	+	.	Parent=Os06t0194400-01
Chr06	irgsp1_rep	mRNA	4796628	4802509	.	-	.	ID=Os06t0194900-01;Name=Os06t0194900-01;Locus_id=Os06g0194900;CGSNL Gene Symbol=RSUS2;CGSNL Gene Name=SUCROSE SYNTHASE 2;Oryzabase Gene Symbol Synonym(s)=sus2%2C RSus2(t)%2C SUS2%2C SS1%2C OsScS1%2C RSs1%2C RSus2%2C OsSUS2%2C RSS1%2C RSus1%2C OsSusy2%2C Susy2;Oryzabase Gene Name Synonym(s)=sucrose synthase2%2C Sucrose synthase 2%2C Sucrose synthase 1%2C Sucrose-UDP glucosyltransferase 2%2C Sucrose synthase-1%2C rice SuSy gene 1%2C sucrose-UDP glucosyltransferase isozyme 1%2C sucrose synthase l%2C rice sucrose synthase-1;Note=Sucrose synthase 2 (EC 2.4.1.13).;Transcript_evidence=AK072074 (DDBJ%2C Best hit);ORF_evidence=P30298 (UniProt);GO=Biological Process: sucrose metabolic process (GO:0005985),Biological Process: biosynthetic process (GO:0009058),Molecular Function: sucrose synthase activity (GO:0016157);InterPro=Sucrose synthase (IPR000368),Glycosyl transferase%2C family 1 (IPR001296),Sucrose synthase%2C plant/cyanobacteria (IPR012820);NIAS_FLcDNA=J013116D04;Oryzabase=2199;Expression=AK072074;TENOR=Os06t0194900-01;KEGG=Os06t0194900-01 (EC:2.4.1.13)
Chr06	irgsp1_rep	five_prime_UTR	4802440	4802509	.	-	.	Parent=Os06t0194900-01
Chr06	irgsp1_rep	five_prime_UTR	4801258	4801273	.	-	.	Parent=Os06t0194900-01
Chr06	irgsp1_rep	CDS	4801163	4801257	.	-	0	Parent=Os06t0194900-01
Chr06	irgsp1_rep	CDS	4800631	4800751	.	-	1	Parent=Os06t0194900-01
Chr06	irgsp1_rep	CDS	4800390	4800541	.	-	0	Parent=Os06t0194900-01
Chr06	irgsp1_rep	CDS	4800114	4800306	.	-	1	Parent=Os06t0194900-01
Chr06	irgsp1_rep	CDS	4799846	4799964	.	-	0	Parent=Os06t0194900-01
Chr06	irgsp1_rep	CDS	4799534	4799750	.	-	1	Parent=Os06t0194900-01
Chr06	irgsp1_rep	CDS	4799356	4799451	.	-	0	Parent=Os06t0194900-01
Chr06	irgsp1_rep	CDS	4799086	4799259	.	-	0	Parent=Os06t0194900-01
Chr06	irgsp1_rep	CDS	4798885	4799001	.	-	0	Parent=Os06t0194900-01
Chr06	irgsp1_rep	CDS	4798636	4798802	.	-	0	Parent=Os06t0194900-01
Chr06	irgsp1_rep	CDS	4798323	4798547	.	-	1	Parent=Os06t0194900-01
Chr06	irgsp1_rep	CDS	4797665	4797983	.	-	1	Parent=Os06t0194900-01
Chr06	irgsp1_rep	CDS	4797290	4797534	.	-	0	Parent=Os06t0194900-01
Chr06	irgsp1_rep	CDS	4797040	4797178	.	-	1	Parent=Os06t0194900-01
Chr06	irgsp1_rep	CDS	4796895	4796942	.	-	0	Parent=Os06t0194900-01
Chr06	irgsp1_rep	three_prime_UTR	4796628	4796894	.	-	.	Parent=Os06t0194900-01
Chr06	irgsp1_rep	mRNA	4796670	4802472	.	-	.	ID=Os06t0194900-02;Name=Os06t0194900-02;Locus_id=Os06g0194900;CGSNL Gene Symbol=RSUS2;CGSNL Gene Name=SUCROSE SYNTHASE 2;Oryzabase Gene Symbol Synonym(s)=sus2%2C RSus2(t)%2C SUS2%2C SS1%2C OsScS1%2C RSs1%2C RSus2%2C OsSUS2%2C RSS1%2C RSus1%2C OsSusy2%2C Susy2;Oryzabase Gene Name Synonym(s)=sucrose synthase2%2C Sucrose synthase 2%2C Sucrose synthase 1%2C Sucrose-UDP glucosyltransferase 2%2C Sucrose synthase-1%2C rice SuSy gene 1%2C sucrose-UDP glucosyltransferase isozyme 1%2C sucrose synthase l%2C rice sucrose synthase-1;Note=Sucrose synthase 2 (EC 2.4.1.13).;Transcript_evidence=AK098923 (DDBJ%2C Best hit);ORF_evidence=P30298 (UniProt);GO=Biological Process: sucrose metabolic process (GO:0005985),Biological Process: biosynthetic process (GO:0009058),Molecular Function: sucrose synthase activity (GO:0016157);InterPro=Sucrose synthase (IPR000368),Glycosyl transferase%2C family 1 (IPR001296),Sucrose synthase%2C plant/cyanobacteria (IPR012820);NIAS_FLcDNA=J013002P14;Oryzabase=2199;Expression=AK098923;TENOR=Os06t0194900-02;KEGG=Os06t0194900-02 (EC:2.4.1.13)
Chr06	irgsp1_rep	five_prime_UTR	4802440	4802472	.	-	.	Parent=Os06t0194900-02
Chr06	irgsp1_rep	five_prime_UTR	4801258	4801273	.	-	.	Parent=Os06t0194900-02
Chr06	irgsp1_rep	CDS	4801163	4801257	.	-	0	Parent=Os06t0194900-02
Chr06	irgsp1_rep	CDS	4800631	4800751	.	-	1	Parent=Os06t0194900-02
Chr06	irgsp1_rep	CDS	4800390	4800541	.	-	0	Parent=Os06t0194900-02
Chr06	irgsp1_rep	CDS	4800114	4800306	.	-	1	Parent=Os06t0194900-02
Chr06	irgsp1_rep	CDS	4799846	4799964	.	-	0	Parent=Os06t0194900-02
Chr06	irgsp1_rep	CDS	4799534	4799750	.	-	1	Parent=Os06t0194900-02
Chr06	irgsp1_rep	CDS	4799356	4799451	.	-	0	Parent=Os06t0194900-02
Chr06	irgsp1_rep	CDS	4799086	4799259	.	-	0	Parent=Os06t0194900-02
Chr06	irgsp1_rep	CDS	4798885	4799001	.	-	0	Parent=Os06t0194900-02
Chr06	irgsp1_rep	CDS	4798636	4798802	.	-	0	Parent=Os06t0194900-02
Chr06	irgsp1_rep	CDS	4798323	4798547	.	-	1	Parent=Os06t0194900-02
Chr06	irgsp1_rep	CDS	4797665	4797983	.	-	1	Parent=Os06t0194900-02
Chr06	irgsp1_rep	CDS	4797290	4797534	.	-	0	Parent=Os06t0194900-02
Chr06	irgsp1_rep	CDS	4797040	4797178	.	-	1	Parent=Os06t0194900-02
Chr06	irgsp1_rep	CDS	4796895	4796942	.	-	0	Parent=Os06t0194900-02
Chr06	irgsp1_rep	three_prime_UTR	4796670	4796894	.	-	.	Parent=Os06t0194900-02
Chr06	irgsp1_rep	mRNA	4796714	4802437	.	-	.	ID=Os06t0194900-03;Name=Os06t0194900-03;Locus_id=Os06g0194900;CGSNL Gene Symbol=RSUS2;CGSNL Gene Name=SUCROSE SYNTHASE 2;Oryzabase Gene Symbol Synonym(s)=sus2%2C RSus2(t)%2C SUS2%2C SS1%2C OsScS1%2C RSs1%2C RSus2%2C OsSUS2%2C RSS1%2C RSus1%2C OsSusy2%2C Susy2;Oryzabase Gene Name Synonym(s)=sucrose synthase2%2C Sucrose synthase 2%2C Sucrose synthase 1%2C Sucrose-UDP glucosyltransferase 2%2C Sucrose synthase-1%2C rice SuSy gene 1%2C sucrose-UDP glucosyltransferase isozyme 1%2C sucrose synthase l%2C rice sucrose synthase-1;Note=Sucrose synthase 2 (EC 2.4.1.13).;Transcript_evidence=AK100546 (DDBJ%2C Best hit);ORF_evidence=P30298 (UniProt);GO=Biological Process: sucrose metabolic process (GO:0005985),Biological Process: biosynthetic process (GO:0009058),Molecular Function: sucrose synthase activity (GO:0016157);InterPro=Sucrose synthase (IPR000368),Glycosyl transferase%2C family 1 (IPR001296),Sucrose synthase%2C plant/cyanobacteria (IPR012820);NIAS_FLcDNA=J023102M20;Oryzabase=2199;Expression=AK100546;TENOR=Os06t0194900-03;KEGG=Os06t0194900-03 (EC:2.4.1.13)
Chr06	irgsp1_rep	five_prime_UTR	4801674	4802437	.	-	.	Parent=Os06t0194900-03
Chr06	irgsp1_rep	five_prime_UTR	4801258	4801273	.	-	.	Parent=Os06t0194900-03
Chr06	irgsp1_rep	CDS	4801163	4801257	.	-	0	Parent=Os06t0194900-03
Chr06	irgsp1_rep	CDS	4800631	4800751	.	-	1	Parent=Os06t0194900-03
Chr06	irgsp1_rep	CDS	4800390	4800541	.	-	0	Parent=Os06t0194900-03
Chr06	irgsp1_rep	CDS	4800114	4800306	.	-	1	Parent=Os06t0194900-03
Chr06	irgsp1_rep	CDS	4799846	4799964	.	-	0	Parent=Os06t0194900-03
Chr06	irgsp1_rep	CDS	4799534	4799750	.	-	1	Parent=Os06t0194900-03
Chr06	irgsp1_rep	CDS	4799356	4799451	.	-	0	Parent=Os06t0194900-03
Chr06	irgsp1_rep	CDS	4799086	4799259	.	-	0	Parent=Os06t0194900-03
Chr06	irgsp1_rep	CDS	4798885	4799001	.	-	0	Parent=Os06t0194900-03
Chr06	irgsp1_rep	CDS	4798636	4798802	.	-	0	Parent=Os06t0194900-03
Chr06	irgsp1_rep	CDS	4798323	4798547	.	-	1	Parent=Os06t0194900-03
Chr06	irgsp1_rep	CDS	4797665	4797983	.	-	1	Parent=Os06t0194900-03
Chr06	irgsp1_rep	CDS	4797290	4797534	.	-	0	Parent=Os06t0194900-03
Chr06	irgsp1_rep	CDS	4797040	4797178	.	-	1	Parent=Os06t0194900-03
Chr06	irgsp1_rep	CDS	4796895	4796942	.	-	0	Parent=Os06t0194900-03
Chr06	irgsp1_rep	three_prime_UTR	4796714	4796894	.	-	.	Parent=Os06t0194900-03
Chr06	irgsp1_rep	mRNA	4796713	4800197	.	-	.	ID=Os06t0194900-04;Name=Os06t0194900-04;Locus_id=Os06g0194900;CGSNL Gene Symbol=RSUS2;CGSNL Gene Name=SUCROSE SYNTHASE 2;Oryzabase Gene Symbol Synonym(s)=sus2%2C RSus2(t)%2C SUS2%2C SS1%2C OsScS1%2C RSs1%2C RSus2%2C OsSUS2%2C RSS1%2C RSus1%2C OsSusy2%2C Susy2;Oryzabase Gene Name Synonym(s)=sucrose synthase2%2C Sucrose synthase 2%2C Sucrose synthase 1%2C Sucrose-UDP glucosyltransferase 2%2C Sucrose synthase-1%2C rice SuSy gene 1%2C sucrose-UDP glucosyltransferase isozyme 1%2C sucrose synthase l%2C rice sucrose synthase-1;Note=Similar to Sucrose synthase 2.;Transcript_evidence=AK119193 (DDBJ%2C Best hit);ORF_evidence=A1YQI8 (UniProt);GO=Biological Process: sucrose metabolic process (GO:0005985),Biological Process: biosynthetic process (GO:0009058),Molecular Function: sucrose synthase activity (GO:0016157);InterPro=Sucrose synthase (IPR000368),Glycosyl transferase%2C family 1 (IPR001296),Sucrose synthase%2C plant/cyanobacteria (IPR012820);NIAS_FLcDNA=001-041-C01;Oryzabase=2199;Expression=AK119193;TENOR=Os06t0194900-04;KEGG=Os06t0194900-04 (EC:2.4.1.13)
Chr06	irgsp1_rep	CDS	4800114	4800197	.	-	0	Parent=Os06t0194900-04
Chr06	irgsp1_rep	CDS	4799846	4799964	.	-	0	Parent=Os06t0194900-04
Chr06	irgsp1_rep	CDS	4799534	4799750	.	-	1	Parent=Os06t0194900-04
Chr06	irgsp1_rep	CDS	4799356	4799451	.	-	0	Parent=Os06t0194900-04
Chr06	irgsp1_rep	CDS	4799086	4799259	.	-	0	Parent=Os06t0194900-04
Chr06	irgsp1_rep	CDS	4798885	4799001	.	-	0	Parent=Os06t0194900-04
Chr06	irgsp1_rep	CDS	4798636	4798802	.	-	0	Parent=Os06t0194900-04
Chr06	irgsp1_rep	CDS	4798323	4798547	.	-	1	Parent=Os06t0194900-04
Chr06	irgsp1_rep	CDS	4797665	4797983	.	-	1	Parent=Os06t0194900-04
Chr06	irgsp1_rep	CDS	4797290	4797534	.	-	0	Parent=Os06t0194900-04
Chr06	irgsp1_rep	CDS	4797040	4797178	.	-	1	Parent=Os06t0194900-04
Chr06	irgsp1_rep	CDS	4796895	4796942	.	-	0	Parent=Os06t0194900-04
Chr06	irgsp1_rep	three_prime_UTR	4796713	4796894	.	-	.	Parent=Os06t0194900-04
Chr06	irgsp1_rep	mRNA	4797045	4800753	.	+	.	ID=Os06t0195025-00;Name=Os06t0195025-00;Locus_id=Os06g0195025;Note=Hypothetical protein.;Transcript_evidence=tplb0054p19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0195025-00
Chr06	irgsp1_rep	five_prime_UTR	4797045	4797175	.	+	.	Parent=Os06t0195025-00
Chr06	irgsp1_rep	five_prime_UTR	4797287	4797534	.	+	.	Parent=Os06t0195025-00
Chr06	irgsp1_rep	five_prime_UTR	4797665	4797967	.	+	.	Parent=Os06t0195025-00
Chr06	irgsp1_rep	five_prime_UTR	4798308	4798540	.	+	.	Parent=Os06t0195025-00
Chr06	irgsp1_rep	five_prime_UTR	4798626	4798802	.	+	.	Parent=Os06t0195025-00
Chr06	irgsp1_rep	five_prime_UTR	4798885	4798989	.	+	.	Parent=Os06t0195025-00
Chr06	irgsp1_rep	five_prime_UTR	4799073	4799268	.	+	.	Parent=Os06t0195025-00
Chr06	irgsp1_rep	five_prime_UTR	4799362	4799442	.	+	.	Parent=Os06t0195025-00
Chr06	irgsp1_rep	five_prime_UTR	4799528	4799752	.	+	.	Parent=Os06t0195025-00
Chr06	irgsp1_rep	five_prime_UTR	4799839	4799962	.	+	.	Parent=Os06t0195025-00
Chr06	irgsp1_rep	five_prime_UTR	4800109	4800128	.	+	.	Parent=Os06t0195025-00
Chr06	irgsp1_rep	CDS	4800129	4800308	.	+	0	Parent=Os06t0195025-00
Chr06	irgsp1_rep	CDS	4800392	4800550	.	+	0	Parent=Os06t0195025-00
Chr06	irgsp1_rep	CDS	4800639	4800746	.	+	0	Parent=Os06t0195025-00
Chr06	irgsp1_rep	three_prime_UTR	4800747	4800753	.	+	.	Parent=Os06t0195025-00
Chr06	irgsp1_rep	mRNA	4804019	4804243	.	-	.	ID=Os06t0195150-00;Name=Os06t0195150-00;Locus_id=Os06g0195150;Note=Non-protein coding transcript.;Transcript_evidence=CT836222 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os06t0195150-00
Chr06	irgsp1_rep	exon	4804019	4804243	.	-	.	Parent=Os06t0195150-00
Chr06	irgsp1_rep	mRNA	4825386	4825761	.	+	.	ID=Os06t0195275-00;Name=Os06t0195275-00;Locus_id=Os06g0195275;Note=Hypothetical protein.;Transcript_evidence=AK372466 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0195275-00
Chr06	irgsp1_rep	CDS	4825386	4825761	.	+	0	Parent=Os06t0195275-00
Chr06	irgsp1_rep	mRNA	4844553	4854690	.	-	.	ID=Os06t0195600-01;Name=Os06t0195600-01;Locus_id=Os06g0195600;Note=Similar to SAC domain protein 3.;Transcript_evidence=AK070888 (DDBJ%2C Best hit);ORF_evidence=NP_189908.2 (RefSeq);GO=Molecular Function: phosphoric ester hydrolase activity (GO:0042578);InterPro=Synaptojanin%2C N-terminal (IPR002013);NIAS_FLcDNA=J023072F08;Expression=AK070888;TENOR=Os06t0195600-01;KEGG=Os06t0195600-01
Chr06	irgsp1_rep	five_prime_UTR	4854383	4854690	.	-	.	Parent=Os06t0195600-01
Chr06	irgsp1_rep	CDS	4854293	4854382	.	-	0	Parent=Os06t0195600-01
Chr06	irgsp1_rep	CDS	4852019	4852223	.	-	0	Parent=Os06t0195600-01
Chr06	irgsp1_rep	CDS	4851763	4851928	.	-	2	Parent=Os06t0195600-01
Chr06	irgsp1_rep	CDS	4851266	4851488	.	-	1	Parent=Os06t0195600-01
Chr06	irgsp1_rep	CDS	4850647	4850723	.	-	0	Parent=Os06t0195600-01
Chr06	irgsp1_rep	CDS	4850355	4850536	.	-	1	Parent=Os06t0195600-01
Chr06	irgsp1_rep	CDS	4850186	4850283	.	-	2	Parent=Os06t0195600-01
Chr06	irgsp1_rep	CDS	4849881	4850014	.	-	0	Parent=Os06t0195600-01
Chr06	irgsp1_rep	CDS	4849668	4849796	.	-	1	Parent=Os06t0195600-01
Chr06	irgsp1_rep	CDS	4848993	4849404	.	-	1	Parent=Os06t0195600-01
Chr06	irgsp1_rep	CDS	4847971	4848092	.	-	0	Parent=Os06t0195600-01
Chr06	irgsp1_rep	CDS	4847761	4847853	.	-	1	Parent=Os06t0195600-01
Chr06	irgsp1_rep	CDS	4846245	4846445	.	-	1	Parent=Os06t0195600-01
Chr06	irgsp1_rep	CDS	4845977	4846093	.	-	1	Parent=Os06t0195600-01
Chr06	irgsp1_rep	CDS	4845590	4845665	.	-	1	Parent=Os06t0195600-01
Chr06	irgsp1_rep	CDS	4845053	4845139	.	-	0	Parent=Os06t0195600-01
Chr06	irgsp1_rep	three_prime_UTR	4844553	4845052	.	-	.	Parent=Os06t0195600-01
Chr06	irgsp1_rep	mRNA	4868189	4870144	.	+	.	ID=Os06t0195800-01;Name=Os06t0195800-01;Locus_id=Os06g0195800;Oryzabase Gene Symbol Synonym(s)=OsDjC53;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C53;Note=Similar to DNAJ heat shock N-terminal domain-containing protein.;Transcript_evidence=AK111076 (DDBJ%2C Best hit);ORF_evidence=NP_188036.1 (RefSeq);GO=Molecular Function: heat shock protein binding (GO:0031072);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623);NIAS_FLcDNA=002-175-E11;Oryzabase=12210;TENOR=Os06t0195800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	4868189	4868189	.	+	.	Parent=Os06t0195800-01
Chr06	irgsp1_rep	CDS	4868190	4868301	.	+	0	Parent=Os06t0195800-01
Chr06	irgsp1_rep	CDS	4868439	4868524	.	+	2	Parent=Os06t0195800-01
Chr06	irgsp1_rep	CDS	4868617	4868679	.	+	0	Parent=Os06t0195800-01
Chr06	irgsp1_rep	CDS	4868772	4869014	.	+	0	Parent=Os06t0195800-01
Chr06	irgsp1_rep	CDS	4869822	4869917	.	+	0	Parent=Os06t0195800-01
Chr06	irgsp1_rep	three_prime_UTR	4869918	4870144	.	+	.	Parent=Os06t0195800-01
Chr06	irgsp1_rep	mRNA	4870920	4872191	.	-	.	ID=Os06t0195900-01;Name=Os06t0195900-01;Locus_id=Os06g0195900;Note=NOG%2C C-terminal domain containing protein.;Transcript_evidence=AK101986 (DDBJ%2C Best hit);ORF_evidence=NP_175505.1 (RefSeq);InterPro=NOG%2C C-terminal (IPR012973);NIAS_FLcDNA=J033078P03;Expression=AK101986;TENOR=Os06t0195900-01;KEGG=Os06t0195900-01
Chr06	irgsp1_rep	five_prime_UTR	4872191	4872191	.	-	.	Parent=Os06t0195900-01
Chr06	irgsp1_rep	CDS	4871357	4872190	.	-	0	Parent=Os06t0195900-01
Chr06	irgsp1_rep	three_prime_UTR	4871320	4871356	.	-	.	Parent=Os06t0195900-01
Chr06	irgsp1_rep	three_prime_UTR	4870920	4871228	.	-	.	Parent=Os06t0195900-01
Chr06	irgsp1_rep	mRNA	4870881	4872125	.	-	.	ID=Os06t0195900-02;Name=Os06t0195900-02;Locus_id=Os06g0195900;Note=Similar to predicted protein.;Transcript_evidence=AK060430 (DDBJ%2C Best hit);ORF_evidence=NP_175505.1 (RefSeq);InterPro=NOG%2C C-terminal (IPR012973);NIAS_FLcDNA=001-011-A10;Expression=AK060430;TENOR=Os06t0195900-02;KEGG=Os06t0195900-02
Chr06	irgsp1_rep	five_prime_UTR	4872125	4872125	.	-	.	Parent=Os06t0195900-02
Chr06	irgsp1_rep	CDS	4871357	4872124	.	-	0	Parent=Os06t0195900-02
Chr06	irgsp1_rep	three_prime_UTR	4871320	4871356	.	-	.	Parent=Os06t0195900-02
Chr06	irgsp1_rep	three_prime_UTR	4870881	4871228	.	-	.	Parent=Os06t0195900-02
Chr06	irgsp1_rep	mRNA	4885942	4886693	.	-	.	ID=Os06t0196200-00;Name=Os06t0196200-00;Locus_id=Os06g0196200;Note=Conserved hypothetical protein.;Transcript_evidence=FP097894 (DDBJ);ORF_evidence=NP_001057051.2 (RefSeq);TENOR=Os06t0196200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	4886654	4886693	.	-	.	Parent=Os06t0196200-00
Chr06	irgsp1_rep	CDS	4886030	4886653	.	-	0	Parent=Os06t0196200-00
Chr06	irgsp1_rep	three_prime_UTR	4885942	4886029	.	-	.	Parent=Os06t0196200-00
Chr06	irgsp1_rep	mRNA	4888700	4890729	.	-	.	ID=Os06t0196300-01;Name=Os06t0196300-01;Locus_id=Os06g0196300;CGSNL Gene Symbol=PRXQ;CGSNL Gene Name=PEROXIREDOXIN Q;Oryzabase Gene Symbol Synonym(s)=OsPrx Q%2C Prx Q%2C OsPrxQ%2C PrxQ;Oryzabase Gene Name Synonym(s)=peroxiredoxin Q;Note=Similar to Peroxiredoxin Q (Fragment).;Transcript_evidence=AK068635 (DDBJ%2C Best hit);ORF_evidence=B7E468 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: antioxidant activity (GO:0016209),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant (IPR000866),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=J013157F10;Oryzabase=21752;Expression=AK068635;TENOR=Os06t0196300-01;KEGG=Os06t0196300-01 (EC:1.11.1.15)
Chr06	irgsp1_rep	five_prime_UTR	4890632	4890729	.	-	.	Parent=Os06t0196300-01
Chr06	irgsp1_rep	CDS	4890425	4890631	.	-	0	Parent=Os06t0196300-01
Chr06	irgsp1_rep	CDS	4890053	4890280	.	-	0	Parent=Os06t0196300-01
Chr06	irgsp1_rep	CDS	4888794	4889012	.	-	0	Parent=Os06t0196300-01
Chr06	irgsp1_rep	three_prime_UTR	4888700	4888793	.	-	.	Parent=Os06t0196300-01
Chr06	irgsp1_rep	mRNA	4888576	4890705	.	-	.	ID=Os06t0196300-02;Name=Os06t0196300-02;Locus_id=Os06g0196300;CGSNL Gene Symbol=PRXQ;CGSNL Gene Name=PEROXIREDOXIN Q;Oryzabase Gene Symbol Synonym(s)=OsPrx Q%2C Prx Q%2C OsPrxQ%2C PrxQ;Oryzabase Gene Name Synonym(s)=peroxiredoxin Q;Note=Similar to Peroxiredoxin Q (Fragment).;Transcript_evidence=AK059845 (DDBJ%2C Best hit);ORF_evidence=Q5S1S6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: antioxidant activity (GO:0016209),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant (IPR000866),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=006-206-E10;Oryzabase=21752;Expression=AK059845;TENOR=Os06t0196300-02;KEGG=Os06t0196300-02 (EC:1.11.1.15)
Chr06	irgsp1_rep	five_prime_UTR	4890632	4890705	.	-	.	Parent=Os06t0196300-02
Chr06	irgsp1_rep	CDS	4890425	4890631	.	-	0	Parent=Os06t0196300-02
Chr06	irgsp1_rep	CDS	4890053	4890280	.	-	0	Parent=Os06t0196300-02
Chr06	irgsp1_rep	CDS	4888794	4889012	.	-	0	Parent=Os06t0196300-02
Chr06	irgsp1_rep	three_prime_UTR	4888576	4888793	.	-	.	Parent=Os06t0196300-02
Chr06	irgsp1_rep	mRNA	4892309	4895721	.	-	.	ID=Os06t0196500-00;Name=Os06t0196500-00;Locus_id=Os06g0196500;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q69YA3 (UniProt);TENOR=Os06t0196500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	4895383	4895721	.	-	0	Parent=Os06t0196500-00
Chr06	irgsp1_rep	CDS	4892803	4894279	.	-	0	Parent=Os06t0196500-00
Chr06	irgsp1_rep	CDS	4892505	4892613	.	-	2	Parent=Os06t0196500-00
Chr06	irgsp1_rep	CDS	4892309	4892402	.	-	1	Parent=Os06t0196500-00
Chr06	irgsp1_rep	mRNA	4897253	4900332	.	+	.	ID=Os06t0196550-00;Name=Os06t0196550-00;Locus_id=Os06g0196550;Note=Hypothetical gene.;Transcript_evidence=tplb0010f04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0196550-00;KEGG=Os06t0196550-00
Chr06	irgsp1_rep	five_prime_UTR	4897253	4897471	.	+	.	Parent=Os06t0196550-00
Chr06	irgsp1_rep	CDS	4897472	4897711	.	+	0	Parent=Os06t0196550-00
Chr06	irgsp1_rep	three_prime_UTR	4897712	4897748	.	+	.	Parent=Os06t0196550-00
Chr06	irgsp1_rep	three_prime_UTR	4897933	4898092	.	+	.	Parent=Os06t0196550-00
Chr06	irgsp1_rep	three_prime_UTR	4898175	4898293	.	+	.	Parent=Os06t0196550-00
Chr06	irgsp1_rep	three_prime_UTR	4898675	4898864	.	+	.	Parent=Os06t0196550-00
Chr06	irgsp1_rep	three_prime_UTR	4898950	4899372	.	+	.	Parent=Os06t0196550-00
Chr06	irgsp1_rep	three_prime_UTR	4900022	4900332	.	+	.	Parent=Os06t0196550-00
Chr06	irgsp1_rep	mRNA	4897311	4900564	.	-	.	ID=Os06t0196600-01;Name=Os06t0196600-01;Locus_id=Os06g0196600;RAP-DB Gene Symbol Synonym(s)=OsKASI%2C KASI;RAP-DB Gene Name Synonym(s)=beta-ketoacyl-[acyl carrier protein] synthase I;Oryzabase Gene Symbol Synonym(s)=OsKASI%2C KASI;Oryzabase Gene Name Synonym(s)=beta-ketoacyl-[acyl carrier protein] synthase I;Note=Beta-ketoacyl-[acyl carrier protein] synthase I%2C Root development;Transcript_evidence=AK060515;ORF_evidence=Q69YA2;GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=3-oxoacyl-[acyl-carrier-protein] synthase 2 (IPR017568),Thiolase-like%2C subgroup (IPR016038),Beta-ketoacyl synthase%2C N-terminal (IPR014030),Thiolase-like (IPR016039),Polyketide synthase%2C beta-ketoacyl synthase domain (IPR020841),Beta-ketoacyl synthase%2C C-terminal (IPR014031),Beta-ketoacyl synthase%2C active site (IPR018201);NIAS_FLcDNA=001-020-A01;Manual Curation=April 30%2C 2015;Literature_PMID=25893869;Oryzabase=19550;Expression=AK060515;TENOR=Os06t0196600-01;KEGG=Os06t0196600-01 (EC:2.3.1.179, EC:2.3.1.41)
Chr06	irgsp1_rep	five_prime_UTR	4900479	4900564	.	-	.	Parent=Os06t0196600-01
Chr06	irgsp1_rep	CDS	4900038	4900478	.	-	0	Parent=Os06t0196600-01
Chr06	irgsp1_rep	CDS	4898952	4899383	.	-	0	Parent=Os06t0196600-01
Chr06	irgsp1_rep	CDS	4898693	4898866	.	-	0	Parent=Os06t0196600-01
Chr06	irgsp1_rep	CDS	4898189	4898302	.	-	0	Parent=Os06t0196600-01
Chr06	irgsp1_rep	CDS	4898004	4898105	.	-	0	Parent=Os06t0196600-01
Chr06	irgsp1_rep	CDS	4897829	4897895	.	-	0	Parent=Os06t0196600-01
Chr06	irgsp1_rep	CDS	4897679	4897746	.	-	2	Parent=Os06t0196600-01
Chr06	irgsp1_rep	three_prime_UTR	4897311	4897678	.	-	.	Parent=Os06t0196600-01
Chr06	irgsp1_rep	mRNA	4926019	4932612	.	+	.	ID=Os06t0196700-01;Name=Os06t0196700-01;Locus_id=Os06g0196700;CGSNL Gene Symbol=ARF16;CGSNL Gene Name=AUXIN RESPONSE FACTOR 16;Oryzabase Gene Symbol Synonym(s)=OsARF16;Oryzabase Gene Name Synonym(s)=auxin response factor-16%2C auxin response factor 16;Note=Similar to Auxin response factor 1.;Transcript_evidence=AK103327 (DDBJ%2C Best hit);ORF_evidence=A3B9A0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=J033125L14;Oryzabase=10012;Expression=AK103327;TENOR=Os06t0196700-01;KEGG=Os06t0196700-01
Chr06	irgsp1_rep	five_prime_UTR	4926019	4926491	.	+	.	Parent=Os06t0196700-01
Chr06	irgsp1_rep	CDS	4926492	4926537	.	+	0	Parent=Os06t0196700-01
Chr06	irgsp1_rep	CDS	4926789	4926901	.	+	2	Parent=Os06t0196700-01
Chr06	irgsp1_rep	CDS	4926993	4927088	.	+	0	Parent=Os06t0196700-01
Chr06	irgsp1_rep	CDS	4927186	4927242	.	+	0	Parent=Os06t0196700-01
Chr06	irgsp1_rep	CDS	4927328	4927483	.	+	0	Parent=Os06t0196700-01
Chr06	irgsp1_rep	CDS	4927585	4927669	.	+	0	Parent=Os06t0196700-01
Chr06	irgsp1_rep	CDS	4927910	4928000	.	+	2	Parent=Os06t0196700-01
Chr06	irgsp1_rep	CDS	4928079	4928364	.	+	1	Parent=Os06t0196700-01
Chr06	irgsp1_rep	three_prime_UTR	4928365	4928528	.	+	.	Parent=Os06t0196700-01
Chr06	irgsp1_rep	three_prime_UTR	4928776	4928914	.	+	.	Parent=Os06t0196700-01
Chr06	irgsp1_rep	three_prime_UTR	4929370	4931057	.	+	.	Parent=Os06t0196700-01
Chr06	irgsp1_rep	three_prime_UTR	4931758	4931948	.	+	.	Parent=Os06t0196700-01
Chr06	irgsp1_rep	three_prime_UTR	4932033	4932612	.	+	.	Parent=Os06t0196700-01
Chr06	irgsp1_rep	mRNA	4926019	4932612	.	+	.	ID=Os06t0196700-02;Name=Os06t0196700-02;Locus_id=Os06g0196700;RAP-DB Gene Symbol Synonym(s)=ARF16%2C OsARF16;RAP-DB Gene Name Synonym(s)=AUXIN RESPONSE FACTOR 16%2C auxin response factor-16%2C auxin response factor 16;CGSNL Gene Symbol=ARF16;CGSNL Gene Name=AUXIN RESPONSE FACTOR 16;Oryzabase Gene Symbol Synonym(s)=OsARF16;Oryzabase Gene Name Synonym(s)=auxin response factor-16%2C auxin response factor 16;Note=Auxin response factor%2C Transcription factor%2C Cytokinin-mediated inhibition of phosphate transport%2C Phosphate signaling%2C Auxin and phosphate starvation response;Transcript_evidence=Inferred from literature;ORF_evidence=A3B9A0;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Biological Process: response to hormone (GO:0009725),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983),Cellular Component: nucleus (GO:0005634);InterPro=AUX/IAA protein (IPR003311),DNA-binding pseudobarrel domain (IPR015300),B3 DNA binding domain (IPR003340),Auxin response factor (IPR010525),Aux/IAA-ARF-dimerisation (IPR011525);Manual Curation=December 18%2C 2014;Literature_PMID=25386911,22913536,20693412;Oryzabase=10012
Chr06	irgsp1_rep	five_prime_UTR	4926019	4926491	.	+	.	Parent=Os06t0196700-02
Chr06	irgsp1_rep	CDS	4926492	4926537	.	+	0	Parent=Os06t0196700-02
Chr06	irgsp1_rep	CDS	4926789	4926901	.	+	2	Parent=Os06t0196700-02
Chr06	irgsp1_rep	CDS	4926993	4927088	.	+	0	Parent=Os06t0196700-02
Chr06	irgsp1_rep	CDS	4927186	4927242	.	+	0	Parent=Os06t0196700-02
Chr06	irgsp1_rep	CDS	4927328	4927483	.	+	0	Parent=Os06t0196700-02
Chr06	irgsp1_rep	CDS	4927585	4927669	.	+	0	Parent=Os06t0196700-02
Chr06	irgsp1_rep	CDS	4927910	4928000	.	+	2	Parent=Os06t0196700-02
Chr06	irgsp1_rep	CDS	4928079	4928243	.	+	1	Parent=Os06t0196700-02
Chr06	irgsp1_rep	CDS	4928333	4928528	.	+	1	Parent=Os06t0196700-02
Chr06	irgsp1_rep	CDS	4928776	4928914	.	+	0	Parent=Os06t0196700-02
Chr06	irgsp1_rep	CDS	4929370	4931057	.	+	2	Parent=Os06t0196700-02
Chr06	irgsp1_rep	CDS	4931758	4931948	.	+	0	Parent=Os06t0196700-02
Chr06	irgsp1_rep	CDS	4932033	4932177	.	+	1	Parent=Os06t0196700-02
Chr06	irgsp1_rep	three_prime_UTR	4932178	4932612	.	+	.	Parent=Os06t0196700-02
Chr06	irgsp1_rep	mRNA	4933950	4934873	.	+	.	ID=Os06t0196900-01;Name=Os06t0196900-01;Locus_id=Os06g0196900;Note=Similar to Chaperonin.;Transcript_evidence=AK060406 (DDBJ%2C Best hit);ORF_evidence=B4F848 (UniProt);GO=Biological Process: protein folding (GO:0006457),Cellular Component: cytoplasm (GO:0005737);InterPro=Chaperonin Cpn10 (IPR020818);NIAS_FLcDNA=001-010-D05;TENOR=Os06t0196900-01
Chr06	irgsp1_rep	five_prime_UTR	4933950	4934102	.	+	.	Parent=Os06t0196900-01
Chr06	irgsp1_rep	five_prime_UTR	4934519	4934543	.	+	.	Parent=Os06t0196900-01
Chr06	irgsp1_rep	CDS	4934544	4934714	.	+	0	Parent=Os06t0196900-01
Chr06	irgsp1_rep	CDS	4934815	4934873	.	+	0	Parent=Os06t0196900-01
Chr06	irgsp1_rep	mRNA	4933950	4938469	.	+	.	ID=Os06t0196900-02;Name=Os06t0196900-02;Locus_id=Os06g0196900;Note=Similar to 20 kDa chaperonin%2C chloroplast precursor (Protein Cpn21) (Chloroplast protein Cpn10) (Chloroplast chaperonin 10) (Ch-CPN10) (Chaperonin 20).;Transcript_evidence=AK066195 (DDBJ%2C Best hit);ORF_evidence=B4F848 (UniProt);GO=Biological Process: protein folding (GO:0006457),Cellular Component: cytoplasm (GO:0005737),Molecular Function: ATP binding (GO:0005524);InterPro=GroES-like (IPR011032),Chaperonin 21%2C chloroplast (IPR017416),Chaperonin Cpn10%2C conserved site (IPR018369),Chaperonin Cpn10 (IPR020818);NIAS_FLcDNA=J013052L05;Expression=AK066195;TENOR=Os06t0196900-02;KEGG=Os06t0196900-02
Chr06	irgsp1_rep	five_prime_UTR	4933950	4934102	.	+	.	Parent=Os06t0196900-02
Chr06	irgsp1_rep	five_prime_UTR	4934519	4934543	.	+	.	Parent=Os06t0196900-02
Chr06	irgsp1_rep	CDS	4934544	4934714	.	+	0	Parent=Os06t0196900-02
Chr06	irgsp1_rep	CDS	4934815	4934994	.	+	0	Parent=Os06t0196900-02
Chr06	irgsp1_rep	CDS	4936328	4936483	.	+	0	Parent=Os06t0196900-02
Chr06	irgsp1_rep	CDS	4936643	4936720	.	+	0	Parent=Os06t0196900-02
Chr06	irgsp1_rep	CDS	4938104	4938178	.	+	0	Parent=Os06t0196900-02
Chr06	irgsp1_rep	CDS	4938279	4938284	.	+	0	Parent=Os06t0196900-02
Chr06	irgsp1_rep	three_prime_UTR	4938285	4938469	.	+	.	Parent=Os06t0196900-02
Chr06	irgsp1_rep	mRNA	4933950	4938469	.	+	.	ID=Os06t0196900-03;Name=Os06t0196900-03;Locus_id=Os06g0196900;Note=Similar to Chaperonin.;Transcript_evidence=AK104352 (DDBJ%2C Best hit),AK065072 (DDBJ%2C Best hit),AK243612 (DDBJ%2C Best hit);ORF_evidence=B4F848 (UniProt);GO=Biological Process: protein folding (GO:0006457),Cellular Component: cytoplasm (GO:0005737),Molecular Function: ATP binding (GO:0005524);InterPro=GroES-like (IPR011032),Chaperonin 21%2C chloroplast (IPR017416),Chaperonin Cpn10%2C conserved site (IPR018369),Chaperonin Cpn10 (IPR020818);NIAS_FLcDNA=001-034-G10,J013001K09,J100085L03;TENOR=Os06t0196900-03
Chr06	irgsp1_rep	five_prime_UTR	4933950	4934102	.	+	.	Parent=Os06t0196900-03
Chr06	irgsp1_rep	five_prime_UTR	4934519	4934543	.	+	.	Parent=Os06t0196900-03
Chr06	irgsp1_rep	CDS	4934544	4934714	.	+	0	Parent=Os06t0196900-03
Chr06	irgsp1_rep	CDS	4934815	4934994	.	+	0	Parent=Os06t0196900-03
Chr06	irgsp1_rep	CDS	4936328	4936483	.	+	0	Parent=Os06t0196900-03
Chr06	irgsp1_rep	CDS	4936643	4936720	.	+	0	Parent=Os06t0196900-03
Chr06	irgsp1_rep	CDS	4938104	4938277	.	+	0	Parent=Os06t0196900-03
Chr06	irgsp1_rep	three_prime_UTR	4938278	4938469	.	+	.	Parent=Os06t0196900-03
Chr06	irgsp1_rep	mRNA	4949211	4951939	.	+	.	ID=Os06t0197550-00;Name=Os06t0197550-00;Locus_id=Os06g0197550;Note=Similar to Chaperonin.;Transcript_evidence=ab initio prediction;ORF_evidence=B6TLT8 (UniProt);GO=Biological Process: protein folding (GO:0006457),Cellular Component: cytoplasm (GO:0005737),Molecular Function: ATP binding (GO:0005524);InterPro=GroES-like (IPR011032),Chaperonin Cpn10%2C conserved site (IPR018369),Chaperonin Cpn10 (IPR020818);TENOR=Os06t0197550-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	4949211	4949264	.	+	0	Parent=Os06t0197550-00
Chr06	irgsp1_rep	CDS	4951448	4951603	.	+	0	Parent=Os06t0197550-00
Chr06	irgsp1_rep	CDS	4951763	4951840	.	+	0	Parent=Os06t0197550-00
Chr06	irgsp1_rep	CDS	4951868	4951939	.	+	0	Parent=Os06t0197550-00
Chr06	irgsp1_rep	mRNA	4953262	4953580	.	+	.	ID=Os06t0197575-00;Name=Os06t0197575-00;Locus_id=Os06g0197575;Note=Similar to Chaperonin.;Transcript_evidence=D29698 (DDBJ%2C Best hit);ORF_evidence=B6TVH7 (UniProt);GO=Biological Process: protein folding (GO:0006457),Cellular Component: cytoplasm (GO:0005737);InterPro=GroES-like (IPR011032),Chaperonin Cpn10 (IPR020818);Expression=D29698;TENOR=Os06t0197575-00;KEGG=Os06t0197575-00
Chr06	irgsp1_rep	five_prime_UTR	4953262	4953262	.	+	.	Parent=Os06t0197575-00
Chr06	irgsp1_rep	CDS	4953263	4953397	.	+	0	Parent=Os06t0197575-00
Chr06	irgsp1_rep	three_prime_UTR	4953398	4953580	.	+	.	Parent=Os06t0197575-00
Chr06	irgsp1_rep	mRNA	4976862	4976923	.	-	.	ID=Os06t0197901-00;Name=Os06t0197901-00;Locus_id=Os06g0197901;Note=Non-protein coding transcript.;Transcript_evidence=EU941912 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0197901-00
Chr06	irgsp1_rep	exon	4976862	4976923	.	-	.	Parent=Os06t0197901-00
Chr06	irgsp1_rep	mRNA	4978489	4979162	.	-	.	ID=Os06t0198100-00;Name=Os06t0198100-00;Locus_id=Os06g0198100;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);InterPro=Ribonuclease H1%2C N-terminal (IPR011320);TENOR=Os06t0198100-00
Chr06	irgsp1_rep	five_prime_UTR	4979159	4979162	.	-	.	Parent=Os06t0198100-00
Chr06	irgsp1_rep	CDS	4978736	4979158	.	-	0	Parent=Os06t0198100-00
Chr06	irgsp1_rep	three_prime_UTR	4978489	4978735	.	-	.	Parent=Os06t0198100-00
Chr06	irgsp1_rep	mRNA	5002456	5004747	.	-	.	ID=Os06t0198500-00;Name=Os06t0198500-00;Locus_id=Os06g0198500;Note=RmlC-like jelly roll fold domain containing protein.;Transcript_evidence=EU945799 (DDBJ);ORF_evidence=Q9LMB4 (UniProt);InterPro=Protein of unknown function DUF985 (IPR009327),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710);TENOR=Os06t0198500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	5004603	5004747	.	-	0	Parent=Os06t0198500-00
Chr06	irgsp1_rep	CDS	5002959	5003080	.	-	2	Parent=Os06t0198500-00
Chr06	irgsp1_rep	CDS	5002563	5002886	.	-	0	Parent=Os06t0198500-00
Chr06	irgsp1_rep	three_prime_UTR	5002456	5002562	.	-	.	Parent=Os06t0198500-00
Chr06	irgsp1_rep	mRNA	5005547	5008055	.	-	.	ID=Os06t0198600-01;Name=Os06t0198600-01;Locus_id=Os06g0198600;Note=Protein of unknown function DUF985 domain containing protein.;Transcript_evidence=AK070593 (DDBJ%2C Best hit);ORF_evidence=Q69K63 (UniProt);InterPro=Protein of unknown function DUF985 (IPR009327),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710);NIAS_FLcDNA=J023058D05;TENOR=Os06t0198600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	5006072	5008055	.	-	.	Parent=Os06t0198600-01
Chr06	irgsp1_rep	CDS	5005715	5006071	.	-	0	Parent=Os06t0198600-01
Chr06	irgsp1_rep	three_prime_UTR	5005547	5005714	.	-	.	Parent=Os06t0198600-01
Chr06	irgsp1_rep	mRNA	5008201	5010686	.	+	.	ID=Os06t0198700-01;Name=Os06t0198700-01;Locus_id=Os06g0198700;Oryzabase Gene Symbol Synonym(s)=Get1;Oryzabase Gene Name Synonym(s)=Guided Entry of Tail-anchored protein 1%2C Get1 orthologue%2C Guided Entry of Tail-anchored protein 1 ortholog;Note=CHD5-like protein domain containing protein.;Transcript_evidence=AK060012 (DDBJ%2C Best hit);ORF_evidence=A2YAC8 (UniProt);InterPro=CHD5-like protein (IPR007514);NIAS_FLcDNA=006-302-E08;Oryzabase=22428;Expression=AK060012;TENOR=Os06t0198700-01;KEGG=Os06t0198700-01
Chr06	irgsp1_rep	five_prime_UTR	5008201	5008284	.	+	.	Parent=Os06t0198700-01
Chr06	irgsp1_rep	CDS	5008285	5008365	.	+	0	Parent=Os06t0198700-01
Chr06	irgsp1_rep	CDS	5008574	5008653	.	+	0	Parent=Os06t0198700-01
Chr06	irgsp1_rep	CDS	5008783	5008853	.	+	1	Parent=Os06t0198700-01
Chr06	irgsp1_rep	CDS	5009085	5009155	.	+	2	Parent=Os06t0198700-01
Chr06	irgsp1_rep	CDS	5009251	5009332	.	+	0	Parent=Os06t0198700-01
Chr06	irgsp1_rep	CDS	5009894	5009943	.	+	2	Parent=Os06t0198700-01
Chr06	irgsp1_rep	CDS	5010148	5010234	.	+	0	Parent=Os06t0198700-01
Chr06	irgsp1_rep	three_prime_UTR	5010235	5010686	.	+	.	Parent=Os06t0198700-01
Chr06	irgsp1_rep	mRNA	5012418	5016651	.	-	.	ID=Os06t0198800-01;Name=Os06t0198800-01;Locus_id=Os06g0198800;Note=Similar to 25.3 kDa vesicle transport protein.;Transcript_evidence=AK064781 (DDBJ%2C Best hit);ORF_evidence=B6TMY9 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: integral to membrane (GO:0016021);InterPro=Longin (IPR010908),Longin-like (IPR011012);NIAS_FLcDNA=J013000B09;TENOR=Os06t0198800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	5016478	5016651	.	-	.	Parent=Os06t0198800-01
Chr06	irgsp1_rep	five_prime_UTR	5015060	5015112	.	-	.	Parent=Os06t0198800-01
Chr06	irgsp1_rep	CDS	5014817	5015059	.	-	0	Parent=Os06t0198800-01
Chr06	irgsp1_rep	three_prime_UTR	5014088	5014816	.	-	.	Parent=Os06t0198800-01
Chr06	irgsp1_rep	three_prime_UTR	5013853	5013956	.	-	.	Parent=Os06t0198800-01
Chr06	irgsp1_rep	three_prime_UTR	5013488	5013564	.	-	.	Parent=Os06t0198800-01
Chr06	irgsp1_rep	three_prime_UTR	5012418	5012877	.	-	.	Parent=Os06t0198800-01
Chr06	irgsp1_rep	mRNA	5018055	5018213	.	-	.	ID=Os06t0198850-00;Name=Os06t0198850-00;Locus_id=Os06g0198850;Note=Non-protein coding transcript.;Transcript_evidence=EU947580 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0198850-00
Chr06	irgsp1_rep	exon	5018055	5018213	.	-	.	Parent=Os06t0198850-00
Chr06	irgsp1_rep	mRNA	5018088	5020389	.	+	.	ID=Os06t0198900-01;Name=Os06t0198900-01;Locus_id=Os06g0198900;CGSNL Gene Symbol=RLCK202;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 202;Oryzabase Gene Symbol Synonym(s)=OsRLCK202;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 202;Note=Tyrosine protein kinase domain containing protein.;Transcript_evidence=AK071363 (DDBJ%2C Best hit);ORF_evidence=A2YAD0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023092F04;Oryzabase=18899;Expression=AK071363;TENOR=Os06t0198900-01;KEGG=Os06t0198900-01
Chr06	irgsp1_rep	five_prime_UTR	5018088	5018114	.	+	.	Parent=Os06t0198900-01
Chr06	irgsp1_rep	CDS	5018115	5020196	.	+	0	Parent=Os06t0198900-01
Chr06	irgsp1_rep	three_prime_UTR	5020197	5020389	.	+	.	Parent=Os06t0198900-01
Chr06	irgsp1_rep	mRNA	5023093	5024199	.	+	.	ID=Os06t0199000-01;Name=Os06t0199000-01;Locus_id=Os06g0199000;Note=Similar to Glycine-rich cell wall structural protein 2 precursor.;Transcript_evidence=AK106381 (DDBJ%2C Best hit);ORF_evidence=A2YAD1 (UniProt);NIAS_FLcDNA=002-102-D12;Expression=AK106381;TENOR=Os06t0199000-01;KEGG=Os06t0199000-01
Chr06	irgsp1_rep	five_prime_UTR	5023093	5023125	.	+	.	Parent=Os06t0199000-01
Chr06	irgsp1_rep	CDS	5023126	5023923	.	+	0	Parent=Os06t0199000-01
Chr06	irgsp1_rep	three_prime_UTR	5023924	5024199	.	+	.	Parent=Os06t0199000-01
Chr06	irgsp1_rep	mRNA	5024489	5024674	.	-	.	ID=Os06t0199050-00;Name=Os06t0199050-00;Locus_id=Os06g0199050;Note=Similar to predicted protein.;Transcript_evidence=EU948644 (DDBJ);ORF_evidence=XP_001779700.1 (RefSeq);TENOR=Os06t0199050-00;KEGG=Os06t0199050-00
Chr06	irgsp1_rep	CDS	5024504	5024674	.	-	0	Parent=Os06t0199050-00
Chr06	irgsp1_rep	three_prime_UTR	5024489	5024503	.	-	.	Parent=Os06t0199050-00
Chr06	irgsp1_rep	mRNA	5027686	5035358	.	-	.	ID=Os06t0199100-01;Name=Os06t0199100-01;Locus_id=Os06g0199100;Note=Helix-turn-helix%2C AraC type%2C subdomain 2 domain containing protein.;Transcript_evidence=AK120323 (DDBJ%2C Best hit);ORF_evidence=B9FRZ9 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013057K06;Expression=AK120323;TENOR=Os06t0199100-01;KEGG=Os06t0199100-01
Chr06	irgsp1_rep	five_prime_UTR	5035332	5035358	.	-	.	Parent=Os06t0199100-01
Chr06	irgsp1_rep	CDS	5035155	5035331	.	-	0	Parent=Os06t0199100-01
Chr06	irgsp1_rep	CDS	5031832	5034677	.	-	0	Parent=Os06t0199100-01
Chr06	irgsp1_rep	CDS	5031551	5031751	.	-	1	Parent=Os06t0199100-01
Chr06	irgsp1_rep	CDS	5030622	5030712	.	-	1	Parent=Os06t0199100-01
Chr06	irgsp1_rep	CDS	5029463	5029999	.	-	0	Parent=Os06t0199100-01
Chr06	irgsp1_rep	three_prime_UTR	5029323	5029462	.	-	.	Parent=Os06t0199100-01
Chr06	irgsp1_rep	three_prime_UTR	5029121	5029201	.	-	.	Parent=Os06t0199100-01
Chr06	irgsp1_rep	three_prime_UTR	5028795	5029009	.	-	.	Parent=Os06t0199100-01
Chr06	irgsp1_rep	three_prime_UTR	5028641	5028696	.	-	.	Parent=Os06t0199100-01
Chr06	irgsp1_rep	three_prime_UTR	5027686	5027848	.	-	.	Parent=Os06t0199100-01
Chr06	irgsp1_rep	mRNA	5036133	5041239	.	-	.	ID=Os06t0199200-01;Name=Os06t0199200-01;Locus_id=Os06g0199200;Note=Smr protein/MutS2 C-terminal domain containing protein.;Transcript_evidence=AK066664 (DDBJ%2C Best hit);ORF_evidence=NP_001147971.1 (RefSeq);InterPro=Smr protein/MutS2 C-terminal (IPR002625),Ataxin-2%2C C-terminal (IPR009818),Domain of unknown function DUF1771 (IPR013899);NIAS_FLcDNA=J013072I01;Expression=AK066664;TENOR=Os06t0199200-01;KEGG=Os06t0199200-01
Chr06	irgsp1_rep	five_prime_UTR	5040716	5041239	.	-	.	Parent=Os06t0199200-01
Chr06	irgsp1_rep	five_prime_UTR	5039310	5039377	.	-	.	Parent=Os06t0199200-01
Chr06	irgsp1_rep	CDS	5038572	5039309	.	-	0	Parent=Os06t0199200-01
Chr06	irgsp1_rep	CDS	5037636	5038017	.	-	0	Parent=Os06t0199200-01
Chr06	irgsp1_rep	CDS	5037440	5037510	.	-	2	Parent=Os06t0199200-01
Chr06	irgsp1_rep	CDS	5036785	5036909	.	-	0	Parent=Os06t0199200-01
Chr06	irgsp1_rep	CDS	5036345	5036624	.	-	1	Parent=Os06t0199200-01
Chr06	irgsp1_rep	three_prime_UTR	5036133	5036344	.	-	.	Parent=Os06t0199200-01
Chr06	irgsp1_rep	mRNA	5036134	5039206	.	-	.	ID=Os06t0199200-03;Name=Os06t0199200-03;Locus_id=Os06g0199200;Note=Similar to smr domain containing protein.;Transcript_evidence=AK099729 (DDBJ%2C Best hit);ORF_evidence=NP_001147971.1 (RefSeq);NIAS_FLcDNA=J013089L07;Expression=AK099729;TENOR=Os06t0199200-03;KEGG=Os06t0199200-03
Chr06	irgsp1_rep	five_prime_UTR	5039205	5039206	.	-	.	Parent=Os06t0199200-03
Chr06	irgsp1_rep	CDS	5038572	5039204	.	-	0	Parent=Os06t0199200-03
Chr06	irgsp1_rep	CDS	5037595	5038017	.	-	0	Parent=Os06t0199200-03
Chr06	irgsp1_rep	three_prime_UTR	5036134	5037594	.	-	.	Parent=Os06t0199200-03
Chr06	irgsp1_rep	mRNA	5036132	5040977	.	-	.	ID=Os06t0199200-04;Name=Os06t0199200-04;Locus_id=Os06g0199200;Note=Smr protein/MutS2 C-terminal domain containing protein.;Transcript_evidence=AK099940 (DDBJ%2C Best hit);ORF_evidence=NP_001147971.1 (RefSeq);InterPro=Smr protein/MutS2 C-terminal (IPR002625),Ataxin-2%2C C-terminal (IPR009818),Domain of unknown function DUF1771 (IPR013899);NIAS_FLcDNA=J013120N16;TENOR=Os06t0199200-04
Chr06	irgsp1_rep	five_prime_UTR	5040716	5040977	.	-	.	Parent=Os06t0199200-04
Chr06	irgsp1_rep	five_prime_UTR	5039310	5039377	.	-	.	Parent=Os06t0199200-04
Chr06	irgsp1_rep	CDS	5038572	5039309	.	-	0	Parent=Os06t0199200-04
Chr06	irgsp1_rep	CDS	5037636	5038017	.	-	0	Parent=Os06t0199200-04
Chr06	irgsp1_rep	CDS	5037440	5037510	.	-	2	Parent=Os06t0199200-04
Chr06	irgsp1_rep	CDS	5036785	5036909	.	-	0	Parent=Os06t0199200-04
Chr06	irgsp1_rep	CDS	5036345	5036624	.	-	1	Parent=Os06t0199200-04
Chr06	irgsp1_rep	three_prime_UTR	5036132	5036344	.	-	.	Parent=Os06t0199200-04
Chr06	irgsp1_rep	mRNA	5036133	5040677	.	-	.	ID=Os06t0199200-05;Name=Os06t0199200-05;Locus_id=Os06g0199200;Note=Smr protein/MutS2 C-terminal domain containing protein.;Transcript_evidence=AK099512 (DDBJ%2C Best hit);ORF_evidence=NP_001147971.1 (RefSeq);InterPro=Smr protein/MutS2 C-terminal (IPR002625),Ataxin-2%2C C-terminal (IPR009818),Domain of unknown function DUF1771 (IPR013899);NIAS_FLcDNA=J013029I07;TENOR=Os06t0199200-05
Chr06	irgsp1_rep	five_prime_UTR	5039310	5040677	.	-	.	Parent=Os06t0199200-05
Chr06	irgsp1_rep	CDS	5038572	5039309	.	-	0	Parent=Os06t0199200-05
Chr06	irgsp1_rep	CDS	5037636	5038017	.	-	0	Parent=Os06t0199200-05
Chr06	irgsp1_rep	CDS	5037440	5037510	.	-	2	Parent=Os06t0199200-05
Chr06	irgsp1_rep	CDS	5036785	5036909	.	-	0	Parent=Os06t0199200-05
Chr06	irgsp1_rep	CDS	5036345	5036624	.	-	1	Parent=Os06t0199200-05
Chr06	irgsp1_rep	three_prime_UTR	5036133	5036344	.	-	.	Parent=Os06t0199200-05
Chr06	irgsp1_rep	mRNA	5036132	5038594	.	-	.	ID=Os06t0199200-06;Name=Os06t0199200-06;Locus_id=Os06g0199200;Note=Similar to smr domain containing protein.;Transcript_evidence=AK059995 (DDBJ%2C Best hit);ORF_evidence=NP_001147971.1 (RefSeq);InterPro=Smr protein/MutS2 C-terminal (IPR002625),Domain of unknown function DUF1771 (IPR013899);NIAS_FLcDNA=006-301-F01;TENOR=Os06t0199200-06
Chr06	irgsp1_rep	five_prime_UTR	5038593	5038594	.	-	.	Parent=Os06t0199200-06
Chr06	irgsp1_rep	CDS	5038572	5038592	.	-	0	Parent=Os06t0199200-06
Chr06	irgsp1_rep	CDS	5037636	5038017	.	-	0	Parent=Os06t0199200-06
Chr06	irgsp1_rep	CDS	5037440	5037510	.	-	2	Parent=Os06t0199200-06
Chr06	irgsp1_rep	CDS	5036785	5036909	.	-	0	Parent=Os06t0199200-06
Chr06	irgsp1_rep	CDS	5036345	5036624	.	-	1	Parent=Os06t0199200-06
Chr06	irgsp1_rep	three_prime_UTR	5036132	5036344	.	-	.	Parent=Os06t0199200-06
Chr06	irgsp1_rep	mRNA	5044982	5045310	.	-	.	ID=Os06t0199300-01;Name=Os06t0199300-01;Locus_id=Os06g0199300;Note=Non-protein coding transcript.;Transcript_evidence=AK058843 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-004-F02;TENOR=Os06t0199300-01
Chr06	irgsp1_rep	exon	5044982	5045310	.	-	.	Parent=Os06t0199300-01
Chr06	irgsp1_rep	mRNA	5045385	5046360	.	+	.	ID=Os06t0199400-00;Name=Os06t0199400-00;Locus_id=Os06g0199400;Note=Conserved hypothetical protein.;Transcript_evidence=FP096250 (DDBJ);ORF_evidence=B9FS00 (UniProt);TENOR=Os06t0199400-00
Chr06	irgsp1_rep	CDS	5045385	5045948	.	+	0	Parent=Os06t0199400-00
Chr06	irgsp1_rep	three_prime_UTR	5045949	5046360	.	+	.	Parent=Os06t0199400-00
Chr06	irgsp1_rep	mRNA	5045390	5045779	.	-	.	ID=Os06t0199402-00;Name=Os06t0199402-00;Locus_id=Os06g0199402;Note=Similar to predicted protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q69K56 (UniProt);InterPro=Protein of unknown function DUF1677%2C plant (IPR012876);TENOR=Os06t0199402-00;KEGG=Os06t0199402-00
Chr06	irgsp1_rep	CDS	5045390	5045779	.	-	0	Parent=Os06t0199402-00
Chr06	irgsp1_rep	mRNA	5054918	5056834	.	-	.	ID=Os06t0199500-01;Name=Os06t0199500-01;Locus_id=Os06g0199500;RAP-DB Gene Symbol Synonym(s)=OsHAL3;RAP-DB Gene Name Synonym(s)=halotolerance protein HAL3;Oryzabase Gene Symbol Synonym(s)=OsHAL3%2C HAL3;Oryzabase Gene Name Synonym(s)=halotolerance protein HAL3;Note=Halotolerance protein%2C Flavin mononucleotide (FMN)-binding protein%2C Regulation of cell division%2C Light-regulated growth;Transcript_evidence=FJ809894 (Nona Bokra%2C indica),AK100138;ORF_evidence=C3UZA3,Q69K55;GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Flavoprotein (IPR003382);NIAS_FLcDNA=J023010L24;Manual Curation=October 16%2C 2015;Literature_PMID=19543273;Oryzabase=14740;Expression=AK100138;TENOR=Os06t0199500-01;KEGG=Os06t0199500-01 (EC:4.1.1.36)
Chr06	irgsp1_rep	five_prime_UTR	5056692	5056834	.	-	.	Parent=Os06t0199500-01
Chr06	irgsp1_rep	five_prime_UTR	5056014	5056029	.	-	.	Parent=Os06t0199500-01
Chr06	irgsp1_rep	CDS	5055675	5056013	.	-	0	Parent=Os06t0199500-01
Chr06	irgsp1_rep	CDS	5055223	5055546	.	-	0	Parent=Os06t0199500-01
Chr06	irgsp1_rep	three_prime_UTR	5054918	5055222	.	-	.	Parent=Os06t0199500-01
Chr06	irgsp1_rep	mRNA	5054303	5056798	.	-	.	ID=Os06t0199500-02;Name=Os06t0199500-02;Locus_id=Os06g0199500;Oryzabase Gene Symbol Synonym(s)=OsHAL3%2C HAL3;Oryzabase Gene Name Synonym(s)=halotolerance protein HAL3;Note=Similar to Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) (Halotolerance protein Hal3a) (AtHal3a) (PPCDC) (AtCoaC).;Transcript_evidence=AK064613 (DDBJ%2C Best hit),AK060939 (DDBJ%2C Best hit);ORF_evidence=C3UZA3 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Flavoprotein (IPR003382);NIAS_FLcDNA=002-113-C02,006-201-C05;Oryzabase=14740;Expression=AK064613;TENOR=Os06t0199500-02;KEGG=Os06t0199500-02 (EC:4.1.1.36)
Chr06	irgsp1_rep	five_prime_UTR	5056692	5056798	.	-	.	Parent=Os06t0199500-02
Chr06	irgsp1_rep	five_prime_UTR	5056014	5056029	.	-	.	Parent=Os06t0199500-02
Chr06	irgsp1_rep	CDS	5055675	5056013	.	-	0	Parent=Os06t0199500-02
Chr06	irgsp1_rep	CDS	5055223	5055546	.	-	0	Parent=Os06t0199500-02
Chr06	irgsp1_rep	three_prime_UTR	5054303	5055222	.	-	.	Parent=Os06t0199500-02
Chr06	irgsp1_rep	mRNA	5055431	5055953	.	+	.	ID=Os06t0199601-00;Name=Os06t0199601-00;Locus_id=Os06g0199601;Note=Non-protein coding transcript.;Transcript_evidence=EU942505 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0199601-00
Chr06	irgsp1_rep	exon	5055431	5055603	.	+	.	Parent=Os06t0199601-00
Chr06	irgsp1_rep	exon	5055663	5055953	.	+	.	Parent=Os06t0199601-00
Chr06	irgsp1_rep	mRNA	5057582	5058035	.	-	.	ID=Os06t0199700-00;Name=Os06t0199700-00;Locus_id=Os06g0199700;Note=Hypothetical conserved gene.;Transcript_evidence=EU954770 (DDBJ);ORF_evidence=Q69K54 (UniProt);TENOR=Os06t0199700-00;KEGG=Os06t0199700-00
Chr06	irgsp1_rep	CDS	5057622	5058035	.	-	0	Parent=Os06t0199700-00
Chr06	irgsp1_rep	three_prime_UTR	5057582	5057621	.	-	.	Parent=Os06t0199700-00
Chr06	irgsp1_rep	mRNA	5060664	5064952	.	+	.	ID=Os06t0199800-01;Name=Os06t0199800-01;Locus_id=Os06g0199800;RAP-DB Gene Symbol Synonym(s)=OsGPCR%2C GPCR;RAP-DB Gene Name Synonym(s)=G-protein coupled receptor;Oryzabase Gene Symbol Synonym(s)=OsGPCR%2C GPCR;Oryzabase Gene Name Synonym(s)=G-protein coupled receptor;Note=G-protein coupled receptor%2C Abiotic stress tolerance;Transcript_evidence=AK111880;ORF_evidence=Q69K53;GO=Biological Process: cell surface receptor signaling pathway (GO:0007166),Molecular Function: transmembrane signaling receptor activity (GO:0004888),Cellular Component: integral component of membrane (GO:0016021);InterPro=GCR1-cAMP receptor (IPR022343),G protein-coupled receptor GCR1 putative (IPR022340),GPCR%2C family 2-like (IPR017981);NIAS_FLcDNA=J033046K12;Manual Curation=September 2%2C 2020;Literature_PMID=21778827;Oryzabase=19606;Expression=AK111880;TENOR=Os06t0199800-01;KEGG=Os06t0199800-01
Chr06	irgsp1_rep	five_prime_UTR	5060664	5060737	.	+	.	Parent=Os06t0199800-01
Chr06	irgsp1_rep	CDS	5060738	5060926	.	+	0	Parent=Os06t0199800-01
Chr06	irgsp1_rep	CDS	5061550	5061581	.	+	0	Parent=Os06t0199800-01
Chr06	irgsp1_rep	CDS	5061812	5061981	.	+	1	Parent=Os06t0199800-01
Chr06	irgsp1_rep	CDS	5062476	5062568	.	+	2	Parent=Os06t0199800-01
Chr06	irgsp1_rep	CDS	5063150	5063253	.	+	2	Parent=Os06t0199800-01
Chr06	irgsp1_rep	CDS	5063374	5063430	.	+	0	Parent=Os06t0199800-01
Chr06	irgsp1_rep	CDS	5063759	5063902	.	+	0	Parent=Os06t0199800-01
Chr06	irgsp1_rep	CDS	5064358	5064428	.	+	0	Parent=Os06t0199800-01
Chr06	irgsp1_rep	CDS	5064546	5064651	.	+	1	Parent=Os06t0199800-01
Chr06	irgsp1_rep	three_prime_UTR	5064652	5064952	.	+	.	Parent=Os06t0199800-01
Chr06	irgsp1_rep	mRNA	5072839	5073861	.	-	.	ID=Os06t0200250-01;Name=Os06t0200250-01;Locus_id=Os06g0200250;Note=Hypothetical conserved gene.;Transcript_evidence=AK241227 (DDBJ%2C Best hit);ORF_evidence=Q69K50 (UniProt);NIAS_FLcDNA=J065124O09;TENOR=Os06t0200250-01;KEGG=Os06t0200250-01
Chr06	irgsp1_rep	five_prime_UTR	5073304	5073861	.	-	.	Parent=Os06t0200250-01
Chr06	irgsp1_rep	CDS	5073100	5073303	.	-	0	Parent=Os06t0200250-01
Chr06	irgsp1_rep	three_prime_UTR	5072839	5073099	.	-	.	Parent=Os06t0200250-01
Chr06	irgsp1_rep	mRNA	5082306	5083217	.	-	.	ID=Os06t0200350-00;Name=Os06t0200350-00;Locus_id=Os06g0200350;Note=Conserved hypothetical protein.;Transcript_evidence=CT836307 (DDBJ%2C Best hit);ORF_evidence=B8AJ56 (UniProt);TENOR=Os06t0200350-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	5083217	5083217	.	-	.	Parent=Os06t0200350-00
Chr06	irgsp1_rep	CDS	5082386	5083216	.	-	0	Parent=Os06t0200350-00
Chr06	irgsp1_rep	three_prime_UTR	5082306	5082385	.	-	.	Parent=Os06t0200350-00
Chr06	irgsp1_rep	mRNA	5085603	5085950	.	+	.	ID=Os06t0200500-00;Name=Os06t0200500-00;Locus_id=Os06g0200500;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q69K48 (UniProt);TENOR=Os06t0200500-00;KEGG=Os06t0200500-00
Chr06	irgsp1_rep	CDS	5085603	5085950	.	+	0	Parent=Os06t0200500-00
Chr06	irgsp1_rep	mRNA	5087728	5097220	.	-	.	ID=Os06t0200600-01;Name=Os06t0200600-01;Locus_id=Os06g0200600;Note=Non-protein coding transcript.;Transcript_evidence=AK108885 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-152-D11;TENOR=Os06t0200600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	exon	5097133	5097220	.	-	.	Parent=Os06t0200600-01
Chr06	irgsp1_rep	exon	5087728	5088464	.	-	.	Parent=Os06t0200600-01
Chr06	irgsp1_rep	mRNA	5090599	5093127	.	-	.	ID=Os06t0200700-01;Name=Os06t0200700-01;Locus_id=Os06g0200700;Note=Hypothetical protein.;Transcript_evidence=AK106950 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-119-E03;Expression=AK106950;TENOR=Os06t0200700-01;KEGG=Os06t0200700-01
Chr06	irgsp1_rep	five_prime_UTR	5091271	5093127	.	-	.	Parent=Os06t0200700-01
Chr06	irgsp1_rep	CDS	5090962	5091270	.	-	0	Parent=Os06t0200700-01
Chr06	irgsp1_rep	three_prime_UTR	5090599	5090961	.	-	.	Parent=Os06t0200700-01
Chr06	irgsp1_rep	mRNA	5090957	5092120	.	+	.	ID=Os06t0200800-01;Name=Os06t0200800-01;Locus_id=Os06g0200800;Note=Conserved hypothetical protein.;Transcript_evidence=AK111302 (DDBJ%2C Best hit);ORF_evidence=B9FS07 (UniProt);NIAS_FLcDNA=002-181-B05;TENOR=Os06t0200800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	5090957	5090957	.	+	.	Parent=Os06t0200800-01
Chr06	irgsp1_rep	CDS	5090958	5091036	.	+	0	Parent=Os06t0200800-01
Chr06	irgsp1_rep	CDS	5091123	5091454	.	+	2	Parent=Os06t0200800-01
Chr06	irgsp1_rep	three_prime_UTR	5091455	5092120	.	+	.	Parent=Os06t0200800-01
Chr06	irgsp1_rep	mRNA	5102389	5103441	.	+	.	ID=Os06t0201000-01;Name=Os06t0201000-01;Locus_id=Os06g0201000;Note=Conserved hypothetical protein.;Transcript_evidence=AK108188 (DDBJ%2C Best hit);ORF_evidence=A2YAE2 (UniProt);NIAS_FLcDNA=002-140-B11;Expression=AK108188;TENOR=Os06t0201000-01;KEGG=Os06t0201000-01
Chr06	irgsp1_rep	five_prime_UTR	5102389	5102457	.	+	.	Parent=Os06t0201000-01
Chr06	irgsp1_rep	CDS	5102458	5103216	.	+	0	Parent=Os06t0201000-01
Chr06	irgsp1_rep	three_prime_UTR	5103217	5103441	.	+	.	Parent=Os06t0201000-01
Chr06	irgsp1_rep	mRNA	5106165	5106929	.	+	.	ID=Os06t0201200-01;Name=Os06t0201200-01;Locus_id=Os06g0201200;Note=Conserved hypothetical protein.;Transcript_evidence=AK109163 (DDBJ%2C Best hit);ORF_evidence=A2YAE6 (UniProt);NIAS_FLcDNA=002-155-G10;Expression=AK109163;TENOR=Os06t0201200-01;KEGG=Os06t0201200-01
Chr06	irgsp1_rep	five_prime_UTR	5106165	5106283	.	+	.	Parent=Os06t0201200-01
Chr06	irgsp1_rep	CDS	5106284	5106613	.	+	0	Parent=Os06t0201200-01
Chr06	irgsp1_rep	three_prime_UTR	5106614	5106929	.	+	.	Parent=Os06t0201200-01
Chr06	irgsp1_rep	mRNA	5121496	5122335	.	+	.	ID=Os06t0201500-00;Name=Os06t0201500-00;Locus_id=Os06g0201500;Note=Hypothetical conserved gene.;Transcript_evidence=CT836303 (DDBJ%2C Best hit);ORF_evidence=Q69VV5 (UniProt);TENOR=Os06t0201500-00;KEGG=Os06t0201500-00
Chr06	irgsp1_rep	five_prime_UTR	5121496	5121688	.	+	.	Parent=Os06t0201500-00
Chr06	irgsp1_rep	CDS	5121689	5122060	.	+	0	Parent=Os06t0201500-00
Chr06	irgsp1_rep	three_prime_UTR	5122061	5122335	.	+	.	Parent=Os06t0201500-00
Chr06	irgsp1_rep	mRNA	5143278	5144534	.	+	.	ID=Os06t0202100-01;Name=Os06t0202100-01;Locus_id=Os06g0202100;Note=Conserved hypothetical protein.;Transcript_evidence=AK106373 (DDBJ%2C Best hit);ORF_evidence=B8B3R6 (UniProt);NIAS_FLcDNA=002-102-C12;Expression=AK106373;TENOR=Os06t0202100-01;KEGG=Os06t0202100-01
Chr06	irgsp1_rep	five_prime_UTR	5143278	5143378	.	+	.	Parent=Os06t0202100-01
Chr06	irgsp1_rep	CDS	5143379	5144224	.	+	0	Parent=Os06t0202100-01
Chr06	irgsp1_rep	three_prime_UTR	5144225	5144534	.	+	.	Parent=Os06t0202100-01
Chr06	irgsp1_rep	mRNA	5158231	5165171	.	+	.	ID=Os06t0202300-01;Name=Os06t0202300-01;Locus_id=Os06g0202300;Note=Conserved hypothetical protein.;Transcript_evidence=AK063905 (DDBJ%2C Best hit);ORF_evidence=A6MZI8 (UniProt);NIAS_FLcDNA=001-122-H11;Expression=AK063905;TENOR=Os06t0202300-01;KEGG=Os06t0202300-01
Chr06	irgsp1_rep	five_prime_UTR	5158231	5158236	.	+	.	Parent=Os06t0202300-01
Chr06	irgsp1_rep	CDS	5158237	5158299	.	+	0	Parent=Os06t0202300-01
Chr06	irgsp1_rep	CDS	5164841	5165008	.	+	0	Parent=Os06t0202300-01
Chr06	irgsp1_rep	three_prime_UTR	5165009	5165171	.	+	.	Parent=Os06t0202300-01
Chr06	irgsp1_rep	mRNA	5159153	5160016	.	+	.	ID=Os06t0202400-01;Name=Os06t0202400-01;Locus_id=Os06g0202400;Note=Conserved hypothetical protein.;Transcript_evidence=AK062755 (DDBJ%2C Best hit);ORF_evidence=A2YAE9 (UniProt);NIAS_FLcDNA=001-106-G07;Expression=AK062755;TENOR=Os06t0202400-01;KEGG=Os06t0202400-01
Chr06	irgsp1_rep	five_prime_UTR	5159153	5159280	.	+	.	Parent=Os06t0202400-01
Chr06	irgsp1_rep	CDS	5159281	5159853	.	+	0	Parent=Os06t0202400-01
Chr06	irgsp1_rep	three_prime_UTR	5159854	5160016	.	+	.	Parent=Os06t0202400-01
Chr06	irgsp1_rep	mRNA	5167808	5169003	.	+	.	ID=Os06t0202600-01;Name=Os06t0202600-01;Locus_id=Os06g0202600;Note=Similar to cDNA clone:001-039-A08%2C full insert sequence.;Transcript_evidence=CT829033 (DDBJ%2C Best hit);ORF_evidence=B7E4Q8 (UniProt);TENOR=Os06t0202600-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	5167808	5167808	.	+	.	Parent=Os06t0202600-01
Chr06	irgsp1_rep	CDS	5167809	5168064	.	+	0	Parent=Os06t0202600-01
Chr06	irgsp1_rep	CDS	5168158	5168312	.	+	2	Parent=Os06t0202600-01
Chr06	irgsp1_rep	three_prime_UTR	5168313	5169003	.	+	.	Parent=Os06t0202600-01
Chr06	irgsp1_rep	mRNA	5179776	5180748	.	+	.	ID=Os06t0202700-01;Name=Os06t0202700-01;Locus_id=Os06g0202700;Note=Conserved hypothetical protein.;Transcript_evidence=AK107741 (DDBJ%2C Best hit);ORF_evidence=NP_001057080.1 (RefSeq);NIAS_FLcDNA=002-132-G09;TENOR=Os06t0202700-01;KEGG=Os06t0202700-01
Chr06	irgsp1_rep	five_prime_UTR	5179776	5179847	.	+	.	Parent=Os06t0202700-01
Chr06	irgsp1_rep	CDS	5179848	5180462	.	+	0	Parent=Os06t0202700-01
Chr06	irgsp1_rep	three_prime_UTR	5180463	5180748	.	+	.	Parent=Os06t0202700-01
Chr06	irgsp1_rep	mRNA	5186447	5188307	.	-	.	ID=Os06t0202800-01;Name=Os06t0202800-01;Locus_id=Os06g0202800;Oryzabase Gene Symbol Synonym(s)=OsSTA173;Note=Conserved hypothetical protein.;Transcript_evidence=AK119480 (DDBJ%2C Best hit);ORF_evidence=B9FS12 (UniProt);NIAS_FLcDNA=001-134-B12;Oryzabase=19456;TENOR=Os06t0202800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	5188224	5188307	.	-	0	Parent=Os06t0202800-01
Chr06	irgsp1_rep	CDS	5187996	5188133	.	-	0	Parent=Os06t0202800-01
Chr06	irgsp1_rep	three_prime_UTR	5187038	5187995	.	-	.	Parent=Os06t0202800-01
Chr06	irgsp1_rep	three_prime_UTR	5186447	5186872	.	-	.	Parent=Os06t0202800-01
Chr06	irgsp1_rep	mRNA	5186648	5187993	.	+	.	ID=Os06t0202825-00;Name=Os06t0202825-00;Locus_id=Os06g0202825;Note=Non-protein coding transcript.;Transcript_evidence=tplb0055c23 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os06t0202825-00
Chr06	irgsp1_rep	exon	5186648	5186850	.	+	.	Parent=Os06t0202825-00
Chr06	irgsp1_rep	exon	5187019	5187201	.	+	.	Parent=Os06t0202825-00
Chr06	irgsp1_rep	exon	5187336	5187993	.	+	.	Parent=Os06t0202825-00
Chr06	irgsp1_rep	mRNA	5196777	5199383	.	-	.	ID=Os06t0202900-01;Name=Os06t0202900-01;Locus_id=Os06g0202900;CGSNL Gene Symbol=RLCK203;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 203;Oryzabase Gene Symbol Synonym(s)=OsRLCK203%2C PTK8%2C OsPTK8;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 203%2C Protein Tyrosine Kinase 8;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK109607 (DDBJ%2C Best hit);ORF_evidence=Q84QD9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=002-137-F09;Oryzabase=18900;Expression=AK109607;TENOR=Os06t0202900-01;KEGG=Os06t0202900-01
Chr06	irgsp1_rep	five_prime_UTR	5199243	5199383	.	-	.	Parent=Os06t0202900-01
Chr06	irgsp1_rep	CDS	5198895	5199242	.	-	0	Parent=Os06t0202900-01
Chr06	irgsp1_rep	CDS	5198656	5198791	.	-	0	Parent=Os06t0202900-01
Chr06	irgsp1_rep	CDS	5198421	5198557	.	-	2	Parent=Os06t0202900-01
Chr06	irgsp1_rep	CDS	5196963	5197622	.	-	0	Parent=Os06t0202900-01
Chr06	irgsp1_rep	three_prime_UTR	5196777	5196962	.	-	.	Parent=Os06t0202900-01
Chr06	irgsp1_rep	mRNA	5196835	5197767	.	+	.	ID=Os06t0203000-01;Name=Os06t0203000-01;Locus_id=Os06g0203000;Note=Hypothetical protein.;Transcript_evidence=AK108437 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-143-B06;TENOR=Os06t0203000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	5196835	5196953	.	+	.	Parent=Os06t0203000-01
Chr06	irgsp1_rep	CDS	5196954	5197643	.	+	0	Parent=Os06t0203000-01
Chr06	irgsp1_rep	three_prime_UTR	5197644	5197767	.	+	.	Parent=Os06t0203000-01
Chr06	irgsp1_rep	mRNA	5208882	5212330	.	-	.	ID=Os06t0203200-01;Name=Os06t0203200-01;Locus_id=Os06g0203200;Note=Flavin-containing monooxygenase FMO family protein.;Transcript_evidence=AK106056 (DDBJ%2C Best hit);ORF_evidence=B6SWP3 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: intrinsic to endoplasmic reticulum membrane (GO:0031227),Molecular Function: flavin-containing monooxygenase activity (GO:0004499),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=Dimethylaniline monooxygenase%2C N-oxide-forming (IPR012143),Flavin monooxygenase-like (IPR020946);NIAS_FLcDNA=001-206-F08;Expression=AK106056;TENOR=Os06t0203200-01;KEGG=Os06t0203200-01
Chr06	irgsp1_rep	five_prime_UTR	5212327	5212330	.	-	.	Parent=Os06t0203200-01
Chr06	irgsp1_rep	CDS	5211868	5212326	.	-	0	Parent=Os06t0203200-01
Chr06	irgsp1_rep	CDS	5211248	5211485	.	-	0	Parent=Os06t0203200-01
Chr06	irgsp1_rep	CDS	5210990	5211165	.	-	2	Parent=Os06t0203200-01
Chr06	irgsp1_rep	CDS	5209451	5209800	.	-	0	Parent=Os06t0203200-01
Chr06	irgsp1_rep	CDS	5209031	5209361	.	-	1	Parent=Os06t0203200-01
Chr06	irgsp1_rep	three_prime_UTR	5208882	5209030	.	-	.	Parent=Os06t0203200-01
Chr06	irgsp1_rep	mRNA	5208685	5212328	.	-	.	ID=Os06t0203200-02;Name=Os06t0203200-02;Locus_id=Os06g0203200;Note=Hypothetical conserved gene.;Transcript_evidence=AK071914 (DDBJ%2C Best hit);ORF_evidence=A2YAF5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: flavin-containing monooxygenase activity (GO:0004499),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=NAD(P)-binding domain (IPR016040),Flavin monooxygenase-like (IPR020946);NIAS_FLcDNA=J013069L20;Expression=AK071914;TENOR=Os06t0203200-02;KEGG=Os06t0203200-02
Chr06	irgsp1_rep	five_prime_UTR	5212327	5212328	.	-	.	Parent=Os06t0203200-02
Chr06	irgsp1_rep	CDS	5211868	5212326	.	-	0	Parent=Os06t0203200-02
Chr06	irgsp1_rep	CDS	5211248	5211485	.	-	0	Parent=Os06t0203200-02
Chr06	irgsp1_rep	CDS	5210990	5211165	.	-	2	Parent=Os06t0203200-02
Chr06	irgsp1_rep	CDS	5209447	5209800	.	-	0	Parent=Os06t0203200-02
Chr06	irgsp1_rep	three_prime_UTR	5208685	5209446	.	-	.	Parent=Os06t0203200-02
Chr06	irgsp1_rep	mRNA	5213485	5217872	.	-	.	ID=Os06t0203400-00;Name=Os06t0203400-00;Locus_id=Os06g0203400;Note=Flavin monooxygenase-like domain containing protein.;Transcript_evidence=AK355934 (DDBJ);ORF_evidence=NP_001159167.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: flavin-containing monooxygenase activity (GO:0004499),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=Flavin monooxygenase-like (IPR020946);TENOR=Os06t0203400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	5217677	5217872	.	-	.	Parent=Os06t0203400-00
Chr06	irgsp1_rep	CDS	5217425	5217676	.	-	0	Parent=Os06t0203400-00
Chr06	irgsp1_rep	CDS	5216925	5217159	.	-	0	Parent=Os06t0203400-00
Chr06	irgsp1_rep	CDS	5214444	5214619	.	-	2	Parent=Os06t0203400-00
Chr06	irgsp1_rep	CDS	5213989	5214342	.	-	0	Parent=Os06t0203400-00
Chr06	irgsp1_rep	CDS	5213489	5213863	.	-	0	Parent=Os06t0203400-00
Chr06	irgsp1_rep	three_prime_UTR	5213485	5213488	.	-	.	Parent=Os06t0203400-00
Chr06	irgsp1_rep	mRNA	5221495	5225198	.	+	.	ID=Os06t0203500-01;Name=Os06t0203500-01;Locus_id=Os06g0203500;Note=Similar to UMP-CMP kinase family protein.;Transcript_evidence=AK106691 (DDBJ%2C Best hit);ORF_evidence=B6T904 (UniProt);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleobase-containing compound kinase activity (GO:0019205);InterPro=Adenylate kinase (IPR000850);NIAS_FLcDNA=002-114-C08;TENOR=Os06t0203500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	5221495	5221602	.	+	.	Parent=Os06t0203500-01
Chr06	irgsp1_rep	CDS	5221603	5221683	.	+	0	Parent=Os06t0203500-01
Chr06	irgsp1_rep	CDS	5222512	5222566	.	+	0	Parent=Os06t0203500-01
Chr06	irgsp1_rep	CDS	5222726	5222843	.	+	2	Parent=Os06t0203500-01
Chr06	irgsp1_rep	CDS	5222929	5223118	.	+	1	Parent=Os06t0203500-01
Chr06	irgsp1_rep	three_prime_UTR	5223119	5223296	.	+	.	Parent=Os06t0203500-01
Chr06	irgsp1_rep	three_prime_UTR	5223396	5223503	.	+	.	Parent=Os06t0203500-01
Chr06	irgsp1_rep	three_prime_UTR	5224237	5224307	.	+	.	Parent=Os06t0203500-01
Chr06	irgsp1_rep	three_prime_UTR	5224513	5225198	.	+	.	Parent=Os06t0203500-01
Chr06	irgsp1_rep	mRNA	5222444	5227791	.	-	.	ID=Os06t0203550-01;Name=Os06t0203550-01;Locus_id=Os06g0203550;Note=Non-protein coding transcript.;Transcript_evidence=AK288217 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090011F09;TENOR=Os06t0203550-01
Chr06	irgsp1_rep	exon	5222444	5227791	.	-	.	Parent=Os06t0203550-01
Chr06	irgsp1_rep	mRNA	5227416	5231610	.	+	.	ID=Os06t0203600-01;Name=Os06t0203600-01;Locus_id=Os06g0203600;Oryzabase Gene Symbol Synonym(s)=CHI2%2C OsCHI2;Oryzabase Gene Name Synonym(s)=chalcone isomerase 2;Note=Chalcone isomerase domain containing protein.;Transcript_evidence=AK121461 (DDBJ%2C Best hit);ORF_evidence=A3B9E9 (UniProt);GO=Biological Process: cellular modified amino acid biosynthetic process (GO:0042398),Molecular Function: intramolecular lyase activity (GO:0016872);InterPro=Chalcone isomerase%2C subgroup (IPR003466),Chalcone isomerase (IPR016087);NIAS_FLcDNA=J023143N19;Oryzabase=20203;Expression=AK121461;TENOR=Os06t0203600-01;KEGG=Os06t0203600-01
Chr06	irgsp1_rep	five_prime_UTR	5227416	5227723	.	+	.	Parent=Os06t0203600-01
Chr06	irgsp1_rep	five_prime_UTR	5228209	5228297	.	+	.	Parent=Os06t0203600-01
Chr06	irgsp1_rep	CDS	5228298	5228818	.	+	0	Parent=Os06t0203600-01
Chr06	irgsp1_rep	CDS	5228918	5229128	.	+	1	Parent=Os06t0203600-01
Chr06	irgsp1_rep	CDS	5229562	5229637	.	+	0	Parent=Os06t0203600-01
Chr06	irgsp1_rep	CDS	5229756	5229858	.	+	2	Parent=Os06t0203600-01
Chr06	irgsp1_rep	CDS	5230272	5230340	.	+	1	Parent=Os06t0203600-01
Chr06	irgsp1_rep	CDS	5230501	5230537	.	+	1	Parent=Os06t0203600-01
Chr06	irgsp1_rep	CDS	5230628	5230702	.	+	0	Parent=Os06t0203600-01
Chr06	irgsp1_rep	CDS	5230781	5230832	.	+	0	Parent=Os06t0203600-01
Chr06	irgsp1_rep	CDS	5230935	5230979	.	+	2	Parent=Os06t0203600-01
Chr06	irgsp1_rep	CDS	5231177	5231274	.	+	2	Parent=Os06t0203600-01
Chr06	irgsp1_rep	three_prime_UTR	5231275	5231610	.	+	.	Parent=Os06t0203600-01
Chr06	irgsp1_rep	mRNA	5237769	5240174	.	+	.	ID=Os06t0203700-00;Name=Os06t0203700-00;Locus_id=Os06g0203700;Note=Hypothetical conserved gene.;Transcript_evidence=CT836202 (DDBJ%2C Best hit);ORF_evidence=Q69SP7 (UniProt);TENOR=Os06t0203700-00
Chr06	irgsp1_rep	five_prime_UTR	5237769	5237884	.	+	.	Parent=Os06t0203700-00
Chr06	irgsp1_rep	CDS	5237885	5238150	.	+	0	Parent=Os06t0203700-00
Chr06	irgsp1_rep	CDS	5239783	5240174	.	+	1	Parent=Os06t0203700-00
Chr06	irgsp1_rep	mRNA	5237859	5240350	.	-	.	ID=Os06t0203702-00;Name=Os06t0203702-00;Locus_id=Os06g0203702;Note=Hypothetical protein.;Transcript_evidence=tplb0032c06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0203702-00
Chr06	irgsp1_rep	five_prime_UTR	5239862	5240350	.	-	.	Parent=Os06t0203702-00
Chr06	irgsp1_rep	CDS	5239774	5239861	.	-	0	Parent=Os06t0203702-00
Chr06	irgsp1_rep	CDS	5237892	5238133	.	-	2	Parent=Os06t0203702-00
Chr06	irgsp1_rep	three_prime_UTR	5237859	5237891	.	-	.	Parent=Os06t0203702-00
Chr06	irgsp1_rep	mRNA	5244239	5251843	.	-	.	ID=Os06t0203800-01;Name=Os06t0203800-01;Locus_id=Os06g0203800;RAP-DB Gene Symbol Synonym(s)=RLCK204%2C OsRLCK204%2C OsER1%2C ER1;RAP-DB Gene Name Synonym(s)=RECEPTOR-LIKE CYTOPLASMIC KINASE 204%2C Receptor-like Cytoplasmic Kinase 204%2C ERECTA 1;CGSNL Gene Symbol=RLCK204;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 204;Oryzabase Gene Symbol Synonym(s)=OsRLCK204%2C OsER1%2C ER1;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 204%2C ERECTA 1;Note=Receptor-like kinase%2C Heat tolerance;Transcript_evidence=AK073793;ORF_evidence=Q69SP5;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=Leucine-rich repeat-containing N-terminal%2C plant-type (IPR013210),Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine/threonine/dual specificity protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J033070P05;Manual Curation=September 9%2C 2015;Literature_PMID=26280413,19825577;Oryzabase=18901;Expression=AK073793;TENOR=Os06t0203800-01;KEGG=Os06t0203800-01
Chr06	irgsp1_rep	five_prime_UTR	5251474	5251843	.	-	.	Parent=Os06t0203800-01
Chr06	irgsp1_rep	CDS	5251395	5251473	.	-	0	Parent=Os06t0203800-01
Chr06	irgsp1_rep	CDS	5250432	5250561	.	-	2	Parent=Os06t0203800-01
Chr06	irgsp1_rep	CDS	5250273	5250344	.	-	1	Parent=Os06t0203800-01
Chr06	irgsp1_rep	CDS	5250102	5250173	.	-	1	Parent=Os06t0203800-01
Chr06	irgsp1_rep	CDS	5249945	5250016	.	-	1	Parent=Os06t0203800-01
Chr06	irgsp1_rep	CDS	5249762	5249833	.	-	1	Parent=Os06t0203800-01
Chr06	irgsp1_rep	CDS	5249611	5249682	.	-	1	Parent=Os06t0203800-01
Chr06	irgsp1_rep	CDS	5249255	5249326	.	-	1	Parent=Os06t0203800-01
Chr06	irgsp1_rep	CDS	5249101	5249172	.	-	1	Parent=Os06t0203800-01
Chr06	irgsp1_rep	CDS	5248947	5249015	.	-	1	Parent=Os06t0203800-01
Chr06	irgsp1_rep	CDS	5248782	5248853	.	-	1	Parent=Os06t0203800-01
Chr06	irgsp1_rep	CDS	5248610	5248681	.	-	1	Parent=Os06t0203800-01
Chr06	irgsp1_rep	CDS	5248386	5248457	.	-	1	Parent=Os06t0203800-01
Chr06	irgsp1_rep	CDS	5248233	5248304	.	-	1	Parent=Os06t0203800-01
Chr06	irgsp1_rep	CDS	5248070	5248141	.	-	1	Parent=Os06t0203800-01
Chr06	irgsp1_rep	CDS	5247918	5247989	.	-	1	Parent=Os06t0203800-01
Chr06	irgsp1_rep	CDS	5247695	5247766	.	-	1	Parent=Os06t0203800-01
Chr06	irgsp1_rep	CDS	5247543	5247614	.	-	1	Parent=Os06t0203800-01
Chr06	irgsp1_rep	CDS	5247391	5247462	.	-	1	Parent=Os06t0203800-01
Chr06	irgsp1_rep	CDS	5247242	5247313	.	-	1	Parent=Os06t0203800-01
Chr06	irgsp1_rep	CDS	5247084	5247152	.	-	1	Parent=Os06t0203800-01
Chr06	irgsp1_rep	CDS	5246928	5246999	.	-	1	Parent=Os06t0203800-01
Chr06	irgsp1_rep	CDS	5246768	5246841	.	-	1	Parent=Os06t0203800-01
Chr06	irgsp1_rep	CDS	5246552	5246680	.	-	2	Parent=Os06t0203800-01
Chr06	irgsp1_rep	CDS	5246028	5246375	.	-	2	Parent=Os06t0203800-01
Chr06	irgsp1_rep	CDS	5245470	5245843	.	-	2	Parent=Os06t0203800-01
Chr06	irgsp1_rep	CDS	5244605	5244973	.	-	0	Parent=Os06t0203800-01
Chr06	irgsp1_rep	three_prime_UTR	5244239	5244604	.	-	.	Parent=Os06t0203800-01
Chr06	irgsp1_rep	mRNA	5265125	5268373	.	-	.	ID=Os06t0204100-00;Name=Os06t0204100-00;Locus_id=Os06g0204100;Note=Similar to CytoChrome P450 family protein%2C expressed.;Transcript_evidence=BT036627 (DDBJ);ORF_evidence=Q53KW6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);TENOR=Os06t0204100-00
Chr06	irgsp1_rep	five_prime_UTR	5268250	5268373	.	-	.	Parent=Os06t0204100-00
Chr06	irgsp1_rep	CDS	5267869	5268249	.	-	0	Parent=Os06t0204100-00
Chr06	irgsp1_rep	CDS	5265125	5265703	.	-	0	Parent=Os06t0204100-00
Chr06	irgsp1_rep	mRNA	5265328	5265736	.	+	.	ID=Os06t0204250-00;Name=Os06t0204250-00;Locus_id=Os06g0204250;Note=Hypothetical protein.;Transcript_evidence=EU955821 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0204250-00
Chr06	irgsp1_rep	CDS	5265328	5265736	.	+	0	Parent=Os06t0204250-00
Chr06	irgsp1_rep	mRNA	5276639	5286101	.	-	.	ID=Os06t0204400-01;Name=Os06t0204400-01;Locus_id=Os06g0204400;Note=Similar to Aminoalcoholphosphotransferase.;Transcript_evidence=AK100462 (DDBJ%2C Best hit);ORF_evidence=C7G530 (UniProt);GO=Biological Process: phospholipid biosynthetic process (GO:0008654),Cellular Component: membrane (GO:0016020),Molecular Function: phosphotransferase activity%2C for other substituted phosphate groups (GO:0016780);InterPro=CDP-alcohol phosphatidyltransferase (IPR000462);NIAS_FLcDNA=J023091P12;Expression=AK100462;TENOR=Os06t0204400-01;KEGG=Os06t0204400-01 (EC:2.7.8.1)
Chr06	irgsp1_rep	five_prime_UTR	5285927	5286101	.	-	.	Parent=Os06t0204400-01
Chr06	irgsp1_rep	CDS	5285790	5285926	.	-	0	Parent=Os06t0204400-01
Chr06	irgsp1_rep	CDS	5283807	5283816	.	-	1	Parent=Os06t0204400-01
Chr06	irgsp1_rep	CDS	5283681	5283731	.	-	0	Parent=Os06t0204400-01
Chr06	irgsp1_rep	CDS	5283412	5283489	.	-	0	Parent=Os06t0204400-01
Chr06	irgsp1_rep	CDS	5283139	5283214	.	-	0	Parent=Os06t0204400-01
Chr06	irgsp1_rep	CDS	5283035	5283057	.	-	2	Parent=Os06t0204400-01
Chr06	irgsp1_rep	CDS	5282854	5282954	.	-	0	Parent=Os06t0204400-01
Chr06	irgsp1_rep	CDS	5281253	5281347	.	-	1	Parent=Os06t0204400-01
Chr06	irgsp1_rep	CDS	5281069	5281143	.	-	2	Parent=Os06t0204400-01
Chr06	irgsp1_rep	CDS	5280830	5280899	.	-	2	Parent=Os06t0204400-01
Chr06	irgsp1_rep	CDS	5280443	5280506	.	-	1	Parent=Os06t0204400-01
Chr06	irgsp1_rep	CDS	5279520	5279560	.	-	0	Parent=Os06t0204400-01
Chr06	irgsp1_rep	CDS	5279336	5279432	.	-	1	Parent=Os06t0204400-01
Chr06	irgsp1_rep	three_prime_UTR	5278012	5279335	.	-	.	Parent=Os06t0204400-01
Chr06	irgsp1_rep	three_prime_UTR	5277856	5277914	.	-	.	Parent=Os06t0204400-01
Chr06	irgsp1_rep	three_prime_UTR	5277704	5277756	.	-	.	Parent=Os06t0204400-01
Chr06	irgsp1_rep	three_prime_UTR	5277154	5277226	.	-	.	Parent=Os06t0204400-01
Chr06	irgsp1_rep	three_prime_UTR	5276639	5277068	.	-	.	Parent=Os06t0204400-01
Chr06	irgsp1_rep	mRNA	5276714	5279561	.	-	.	ID=Os06t0204400-02;Name=Os06t0204400-02;Locus_id=Os06g0204400;Note=Similar to ECPT-type aminoalcoholphosphotransferase.;Transcript_evidence=AK067531 (DDBJ%2C Best hit);ORF_evidence=C7G530 (UniProt);NIAS_FLcDNA=J013108M04;TENOR=Os06t0204400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	5279520	5279561	.	-	.	Parent=Os06t0204400-02
Chr06	irgsp1_rep	five_prime_UTR	5278087	5279432	.	-	.	Parent=Os06t0204400-02
Chr06	irgsp1_rep	CDS	5278012	5278086	.	-	0	Parent=Os06t0204400-02
Chr06	irgsp1_rep	CDS	5277856	5277914	.	-	0	Parent=Os06t0204400-02
Chr06	irgsp1_rep	CDS	5277704	5277756	.	-	1	Parent=Os06t0204400-02
Chr06	irgsp1_rep	CDS	5277154	5277226	.	-	2	Parent=Os06t0204400-02
Chr06	irgsp1_rep	CDS	5277047	5277068	.	-	1	Parent=Os06t0204400-02
Chr06	irgsp1_rep	three_prime_UTR	5276714	5277046	.	-	.	Parent=Os06t0204400-02
Chr06	irgsp1_rep	mRNA	5291357	5297546	.	+	.	ID=Os06t0204600-00;Name=Os06t0204600-00;Locus_id=Os06g0204600;Oryzabase Gene Symbol Synonym(s)=OsFbox302%2C Os_F0143%2C OsFbox303%2C Os_F0405;Oryzabase Gene Name Synonym(s)=F-box protein 302%2C F-box protein 303;Note=Conserved hypothetical protein.;Transcript_evidence=AK354215 (DDBJ);ORF_evidence=XP_002459790.1 (RefSeq);Oryzabase=17082,17083;TENOR=Os06t0204600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	5291357	5291962	.	+	0	Parent=Os06t0204600-00
Chr06	irgsp1_rep	CDS	5296337	5296912	.	+	0	Parent=Os06t0204600-00
Chr06	irgsp1_rep	three_prime_UTR	5296913	5297100	.	+	.	Parent=Os06t0204600-00
Chr06	irgsp1_rep	three_prime_UTR	5297368	5297546	.	+	.	Parent=Os06t0204600-00
Chr06	irgsp1_rep	mRNA	5291613	5297559	.	-	.	ID=Os06t0204700-00;Name=Os06t0204700-00;Locus_id=Os06g0204700;Note=Hypothetical protein.;Transcript_evidence=tplb0041l09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0204700-00
Chr06	irgsp1_rep	five_prime_UTR	5297541	5297559	.	-	.	Parent=Os06t0204700-00
Chr06	irgsp1_rep	CDS	5297386	5297540	.	-	0	Parent=Os06t0204700-00
Chr06	irgsp1_rep	CDS	5297050	5297125	.	-	1	Parent=Os06t0204700-00
Chr06	irgsp1_rep	three_prime_UTR	5296926	5297049	.	-	.	Parent=Os06t0204700-00
Chr06	irgsp1_rep	three_prime_UTR	5296332	5296841	.	-	.	Parent=Os06t0204700-00
Chr06	irgsp1_rep	three_prime_UTR	5291613	5291949	.	-	.	Parent=Os06t0204700-00
Chr06	irgsp1_rep	mRNA	5300136	5301473	.	+	.	ID=Os06t0204800-00;Name=Os06t0204800-00;Locus_id=Os06g0204800;CGSNL Gene Symbol=GRF2;CGSNL Gene Name=GROWTH-REGULATING FACTOR 2;Oryzabase Gene Symbol Synonym(s)=OsGRF2;Oryzabase Gene Name Synonym(s)=growth-regulating factor2;Note=Similar to Growth-regulating factor 2.;Transcript_evidence=CT836198 (DDBJ%2C Best hit);ORF_evidence=Q6AWY7 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides (GO:0016818);InterPro=WRC (IPR014977),Glutamine-Leucine-Glutamine%2C QLQ (IPR014978);Oryzabase=10277;TENOR=Os06t0204800-00;KEGG=Os06t0204800-00
Chr06	irgsp1_rep	five_prime_UTR	5300136	5300189	.	+	.	Parent=Os06t0204800-00
Chr06	irgsp1_rep	CDS	5300190	5300394	.	+	0	Parent=Os06t0204800-00
Chr06	irgsp1_rep	CDS	5300477	5301151	.	+	2	Parent=Os06t0204800-00
Chr06	irgsp1_rep	CDS	5301269	5301294	.	+	2	Parent=Os06t0204800-00
Chr06	irgsp1_rep	three_prime_UTR	5301295	5301473	.	+	.	Parent=Os06t0204800-00
Chr06	irgsp1_rep	mRNA	5308684	5310840	.	+	.	ID=Os06t0205000-01;Name=Os06t0205000-01;Locus_id=Os06g0205000;CGSNL Gene Symbol=ATG12;CGSNL Gene Name=AUTOPHAGY ASSOCIATED GENE 12;Oryzabase Gene Symbol Synonym(s)=OsATG12%2C Atg12;Oryzabase Gene Name Synonym(s)=autophagy 12%2C AUTOPHAGY RELATED12;Note=Similar to Ubiquitin-like protein ATG12.;Transcript_evidence=AK243073 (DDBJ%2C Best hit);ORF_evidence=Q69NP0 (UniProt);GO=Biological Process: autophagic vacuole assembly (GO:0000045),Cellular Component: cytoplasm (GO:0005737);InterPro=Autophagy-related protein 12 (IPR007242);NIAS_FLcDNA=J100018F14;Oryzabase=9656;TENOR=Os06t0205000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	5308684	5308991	.	+	.	Parent=Os06t0205000-01
Chr06	irgsp1_rep	CDS	5308992	5309022	.	+	0	Parent=Os06t0205000-01
Chr06	irgsp1_rep	CDS	5309101	5309159	.	+	2	Parent=Os06t0205000-01
Chr06	irgsp1_rep	CDS	5310042	5310110	.	+	0	Parent=Os06t0205000-01
Chr06	irgsp1_rep	CDS	5310192	5310254	.	+	0	Parent=Os06t0205000-01
Chr06	irgsp1_rep	CDS	5310543	5310602	.	+	0	Parent=Os06t0205000-01
Chr06	irgsp1_rep	three_prime_UTR	5310603	5310840	.	+	.	Parent=Os06t0205000-01
Chr06	irgsp1_rep	mRNA	5315163	5316640	.	+	.	ID=Os06t0205100-01;Name=Os06t0205100-01;Locus_id=Os06g0205100;CGSNL Gene Symbol=C;CGSNL Gene Name=CHROMOGEN FOR ANTHOCYANIN;Oryzabase Gene Symbol Synonym(s)=C%2C Cp%2C OsC1%2C Os-C1%2C OsMyb6%2C Myb6;Oryzabase Gene Name Synonym(s)=Chromogen for anthocyanin%2C Chromogen%2C Rice C1 anthocyanin regulatory gene%2C myb transcription factor 6%2C transcription factor MYB6%2C Oryza saliva C1%2C rice homolog of maize C1;Note=Similar to Transcriptional activator.;Transcript_evidence=AK062487 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=001-103-H02;Oryzabase=752;Expression=AK062487;TENOR=Os06t0205100-01;KEGG=Os06t0205100-01
Chr06	irgsp1_rep	five_prime_UTR	5315163	5315171	.	+	.	Parent=Os06t0205100-01
Chr06	irgsp1_rep	CDS	5315172	5315216	.	+	0	Parent=Os06t0205100-01
Chr06	irgsp1_rep	CDS	5316169	5316558	.	+	0	Parent=Os06t0205100-01
Chr06	irgsp1_rep	three_prime_UTR	5316559	5316640	.	+	.	Parent=Os06t0205100-01
Chr06	irgsp1_rep	mRNA	5315178	5316875	.	+	.	ID=Os06t0205100-02;Name=Os06t0205100-02;Locus_id=Os06g0205100;RAP-DB Gene Symbol Synonym(s)=OsC1%2C C;CGSNL Gene Symbol=C;CGSNL Gene Name=CHROMOGEN FOR ANTHOCYANIN;Oryzabase Gene Symbol Synonym(s)=C%2C Cp%2C OsC1%2C Os-C1%2C OsMyb6%2C Myb6;Oryzabase Gene Name Synonym(s)=Chromogen for anthocyanin%2C Chromogen%2C Rice C1 anthocyanin regulatory gene%2C myb transcription factor 6%2C transcription factor MYB6%2C Oryza saliva C1%2C rice homolog of maize C1;Note=R2R3-Myb factor%2C Homolog of maize C1%2C Determinant of anthocyanin biosynthesis in rice leaves%2C Apiculus and leaf sheath colour;Transcript_evidence=Y15219 (indica);ORF_evidence=Q69NN9;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeobox-like domain superfamily (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930);Manual Curation=May 10%2C 2019;Literature_PMID=30891753,15514070;Oryzabase=752
Chr06	irgsp1_rep	five_prime_UTR	5315178	5315267	.	+	.	Parent=Os06t0205100-02
Chr06	irgsp1_rep	CDS	5315268	5315400	.	+	0	Parent=Os06t0205100-02
Chr06	irgsp1_rep	CDS	5315535	5315661	.	+	2	Parent=Os06t0205100-02
Chr06	irgsp1_rep	CDS	5316003	5316558	.	+	1	Parent=Os06t0205100-02
Chr06	irgsp1_rep	three_prime_UTR	5316559	5316875	.	+	.	Parent=Os06t0205100-02
Chr06	irgsp1_rep	mRNA	5317478	5318998	.	-	.	ID=Os06t0205250-01;Name=Os06t0205250-01;Locus_id=Os06g0205250;Note=Conserved hypothetical protein.;Transcript_evidence=AK241209 (DDBJ%2C Best hit);ORF_evidence=NP_001174656.1 (RefSeq);NIAS_FLcDNA=J065122J15;TENOR=Os06t0205250-01;KEGG=Os06t0205250-01
Chr06	irgsp1_rep	five_prime_UTR	5318865	5318998	.	-	.	Parent=Os06t0205250-01
Chr06	irgsp1_rep	CDS	5318217	5318864	.	-	0	Parent=Os06t0205250-01
Chr06	irgsp1_rep	three_prime_UTR	5317478	5318216	.	-	.	Parent=Os06t0205250-01
Chr06	irgsp1_rep	mRNA	5337735	5340667	.	-	.	ID=Os06t0205337-00;Name=Os06t0205337-00;Locus_id=Os06g0205337;Note=Endonuclease/exonuclease/phosphatase domain containing protein.;Transcript_evidence=tplb0014n19 (Wheat FLcDNA);ORF_evidence=NP_001057661.2 (RefSeq);InterPro=Endonuclease/exonuclease/phosphatase (IPR005135);TENOR=Os06t0205337-00
Chr06	irgsp1_rep	CDS	5339747	5340667	.	-	0	Parent=Os06t0205337-00
Chr06	irgsp1_rep	three_prime_UTR	5337735	5339746	.	-	.	Parent=Os06t0205337-00
Chr06	irgsp1_rep	mRNA	5345498	5348828	.	-	.	ID=Os06t0205600-00;Name=Os06t0205600-00;Locus_id=Os06g0205600;Note=Similar to mechanosensitive ion channel domain-containing protein.;Transcript_evidence=AK357076 (DDBJ);ORF_evidence=XP_002873549.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020);InterPro=Mechanosensitive ion channel MscS (IPR006685),Like-Sm ribonucleoprotein (LSM)-related domain (IPR010920),Membrane protein%2C At2g17000%2C predicted (IPR016688);TENOR=Os06t0205600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	5348680	5348828	.	-	.	Parent=Os06t0205600-00
Chr06	irgsp1_rep	CDS	5347340	5348679	.	-	0	Parent=Os06t0205600-00
Chr06	irgsp1_rep	CDS	5347123	5347246	.	-	1	Parent=Os06t0205600-00
Chr06	irgsp1_rep	CDS	5346364	5346657	.	-	0	Parent=Os06t0205600-00
Chr06	irgsp1_rep	CDS	5346071	5346273	.	-	0	Parent=Os06t0205600-00
Chr06	irgsp1_rep	CDS	5345583	5345859	.	-	1	Parent=Os06t0205600-00
Chr06	irgsp1_rep	three_prime_UTR	5345498	5345582	.	-	.	Parent=Os06t0205600-00
Chr06	irgsp1_rep	mRNA	5356602	5358952	.	+	.	ID=Os06t0206000-00;Name=Os06t0206000-00;Locus_id=Os06g0206000;CGSNL Gene Symbol=CPA3;CGSNL Gene Name=CARBAMOYLPUTRESCINE AMIDASE 3;Oryzabase Gene Symbol Synonym(s)=OsCPA3;Oryzabase Gene Name Synonym(s)=N-carbamoyl-Put amidohydrolase 3;Note=Similar to carbon-nitrogen hydrolase family protein.;Transcript_evidence=FP096100 (DDBJ);ORF_evidence=NP_196765.2 (RefSeq);GO=Biological Process: nitrogen compound metabolic process (GO:0006807),Molecular Function: hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds (GO:0016810);InterPro=Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (IPR003010);Oryzabase=21664;TENOR=Os06t0206000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	5356602	5356772	.	+	0	Parent=Os06t0206000-00
Chr06	irgsp1_rep	CDS	5357039	5357254	.	+	0	Parent=Os06t0206000-00
Chr06	irgsp1_rep	CDS	5357573	5357666	.	+	0	Parent=Os06t0206000-00
Chr06	irgsp1_rep	CDS	5357891	5357965	.	+	2	Parent=Os06t0206000-00
Chr06	irgsp1_rep	CDS	5358102	5358180	.	+	2	Parent=Os06t0206000-00
Chr06	irgsp1_rep	CDS	5358424	5358529	.	+	1	Parent=Os06t0206000-00
Chr06	irgsp1_rep	CDS	5358634	5358716	.	+	0	Parent=Os06t0206000-00
Chr06	irgsp1_rep	CDS	5358799	5358952	.	+	1	Parent=Os06t0206000-00
Chr06	irgsp1_rep	mRNA	5359594	5367027	.	+	.	ID=Os06t0206100-01;Name=Os06t0206100-01;Locus_id=Os06g0206100;Note=Similar to Gb protein.;Transcript_evidence=AK121282 (DDBJ%2C Best hit);ORF_evidence=Q8W0T8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=UBA-like (IPR009060),Protein of unknown function DUF1296 (IPR009719);NIAS_FLcDNA=J023108L12;Expression=AK121282;TENOR=Os06t0206100-01;KEGG=Os06t0206100-01
Chr06	irgsp1_rep	five_prime_UTR	5359594	5359757	.	+	.	Parent=Os06t0206100-01
Chr06	irgsp1_rep	CDS	5359758	5359944	.	+	0	Parent=Os06t0206100-01
Chr06	irgsp1_rep	CDS	5360578	5360621	.	+	2	Parent=Os06t0206100-01
Chr06	irgsp1_rep	CDS	5361240	5361366	.	+	0	Parent=Os06t0206100-01
Chr06	irgsp1_rep	CDS	5361472	5361580	.	+	2	Parent=Os06t0206100-01
Chr06	irgsp1_rep	CDS	5362532	5363046	.	+	1	Parent=Os06t0206100-01
Chr06	irgsp1_rep	CDS	5363754	5364072	.	+	2	Parent=Os06t0206100-01
Chr06	irgsp1_rep	CDS	5364479	5364743	.	+	1	Parent=Os06t0206100-01
Chr06	irgsp1_rep	CDS	5364923	5365027	.	+	0	Parent=Os06t0206100-01
Chr06	irgsp1_rep	CDS	5365133	5365231	.	+	0	Parent=Os06t0206100-01
Chr06	irgsp1_rep	CDS	5365745	5366203	.	+	0	Parent=Os06t0206100-01
Chr06	irgsp1_rep	CDS	5366450	5366785	.	+	0	Parent=Os06t0206100-01
Chr06	irgsp1_rep	three_prime_UTR	5366786	5367027	.	+	.	Parent=Os06t0206100-01
Chr06	irgsp1_rep	mRNA	5359660	5367027	.	+	.	ID=Os06t0206100-02;Name=Os06t0206100-02;Locus_id=Os06g0206100;Note=Similar to Gb protein.;Transcript_evidence=AK099498 (DDBJ%2C Best hit);ORF_evidence=Q8W0T8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=UBA-like (IPR009060),Protein of unknown function DUF1296 (IPR009719);NIAS_FLcDNA=J013028A11;Expression=AK099498;TENOR=Os06t0206100-02;KEGG=Os06t0206100-02
Chr06	irgsp1_rep	five_prime_UTR	5359660	5359757	.	+	.	Parent=Os06t0206100-02
Chr06	irgsp1_rep	CDS	5359758	5359944	.	+	0	Parent=Os06t0206100-02
Chr06	irgsp1_rep	CDS	5360578	5360621	.	+	2	Parent=Os06t0206100-02
Chr06	irgsp1_rep	CDS	5361240	5361366	.	+	0	Parent=Os06t0206100-02
Chr06	irgsp1_rep	CDS	5361472	5361580	.	+	2	Parent=Os06t0206100-02
Chr06	irgsp1_rep	CDS	5362532	5363046	.	+	1	Parent=Os06t0206100-02
Chr06	irgsp1_rep	CDS	5363754	5364072	.	+	2	Parent=Os06t0206100-02
Chr06	irgsp1_rep	CDS	5364479	5364743	.	+	1	Parent=Os06t0206100-02
Chr06	irgsp1_rep	CDS	5364923	5365027	.	+	0	Parent=Os06t0206100-02
Chr06	irgsp1_rep	CDS	5365133	5365231	.	+	0	Parent=Os06t0206100-02
Chr06	irgsp1_rep	CDS	5365745	5366203	.	+	0	Parent=Os06t0206100-02
Chr06	irgsp1_rep	CDS	5366450	5366785	.	+	0	Parent=Os06t0206100-02
Chr06	irgsp1_rep	three_prime_UTR	5366786	5367027	.	+	.	Parent=Os06t0206100-02
Chr06	irgsp1_rep	mRNA	5369569	5372844	.	+	.	ID=Os06t0206200-01;Name=Os06t0206200-01;Locus_id=Os06g0206200;Note=Similar to Gb protein.;Transcript_evidence=AK072718 (DDBJ%2C Best hit);ORF_evidence=Q8W0T8 (UniProt);NIAS_FLcDNA=J023139F14;Expression=AK072718;TENOR=Os06t0206200-01;KEGG=Os06t0206200-01
Chr06	irgsp1_rep	five_prime_UTR	5369569	5369682	.	+	.	Parent=Os06t0206200-01
Chr06	irgsp1_rep	CDS	5369683	5369814	.	+	0	Parent=Os06t0206200-01
Chr06	irgsp1_rep	CDS	5369900	5369950	.	+	0	Parent=Os06t0206200-01
Chr06	irgsp1_rep	CDS	5370058	5370109	.	+	0	Parent=Os06t0206200-01
Chr06	irgsp1_rep	CDS	5370240	5370298	.	+	2	Parent=Os06t0206200-01
Chr06	irgsp1_rep	CDS	5371027	5371072	.	+	0	Parent=Os06t0206200-01
Chr06	irgsp1_rep	CDS	5372539	5372678	.	+	2	Parent=Os06t0206200-01
Chr06	irgsp1_rep	three_prime_UTR	5372679	5372844	.	+	.	Parent=Os06t0206200-01
Chr06	irgsp1_rep	mRNA	5374734	5375333	.	+	.	ID=Os06t0206300-01;Name=Os06t0206300-01;Locus_id=Os06g0206300;Note=Hypothetical gene.;Transcript_evidence=AK288118 (DDBJ%2C Best hit);ORF_evidence=Q2QLI8 (UniProt);NIAS_FLcDNA=J080045H02;TENOR=Os06t0206300-01;KEGG=Os06t0206300-01
Chr06	irgsp1_rep	five_prime_UTR	5374734	5374768	.	+	.	Parent=Os06t0206300-01
Chr06	irgsp1_rep	CDS	5374769	5375176	.	+	0	Parent=Os06t0206300-01
Chr06	irgsp1_rep	three_prime_UTR	5375177	5375333	.	+	.	Parent=Os06t0206300-01
Chr06	irgsp1_rep	mRNA	5375459	5376134	.	+	.	ID=Os06t0206401-00;Name=Os06t0206401-00;Locus_id=Os06g0206401;Note=Similar to H0523F07.7 protein.;Transcript_evidence=EU966168 (DDBJ);ORF_evidence=Q01JQ6 (UniProt);TENOR=Os06t0206401-00
Chr06	irgsp1_rep	five_prime_UTR	5375459	5375474	.	+	.	Parent=Os06t0206401-00
Chr06	irgsp1_rep	CDS	5375475	5376134	.	+	0	Parent=Os06t0206401-00
Chr06	irgsp1_rep	mRNA	5388284	5388727	.	-	.	ID=Os06t0206601-00;Name=Os06t0206601-00;Locus_id=Os06g0206601;Note=Hypothetical protein.;Transcript_evidence=EU948609 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0206601-00
Chr06	irgsp1_rep	CDS	5388284	5388727	.	-	0	Parent=Os06t0206601-00
Chr06	irgsp1_rep	mRNA	5393252	5406650	.	+	.	ID=Os06t0206700-01;Name=Os06t0206700-01;Locus_id=Os06g0206700;Note=Similar to Kinesin-related protein.;Transcript_evidence=AK066227 (DDBJ%2C Best hit);ORF_evidence=B9FS33 (UniProt);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752),Kinesin%2C motor region%2C conserved site (IPR019821);NIAS_FLcDNA=J013057N17;Expression=AK066227;TENOR=Os06t0206700-01;KEGG=Os06t0206700-01
Chr06	irgsp1_rep	five_prime_UTR	5393252	5393538	.	+	.	Parent=Os06t0206700-01
Chr06	irgsp1_rep	CDS	5393539	5393648	.	+	0	Parent=Os06t0206700-01
Chr06	irgsp1_rep	CDS	5393754	5393848	.	+	1	Parent=Os06t0206700-01
Chr06	irgsp1_rep	CDS	5394708	5394797	.	+	2	Parent=Os06t0206700-01
Chr06	irgsp1_rep	CDS	5395106	5395158	.	+	2	Parent=Os06t0206700-01
Chr06	irgsp1_rep	CDS	5395661	5395726	.	+	0	Parent=Os06t0206700-01
Chr06	irgsp1_rep	CDS	5395838	5395891	.	+	0	Parent=Os06t0206700-01
Chr06	irgsp1_rep	CDS	5396647	5396706	.	+	0	Parent=Os06t0206700-01
Chr06	irgsp1_rep	CDS	5397322	5397400	.	+	0	Parent=Os06t0206700-01
Chr06	irgsp1_rep	CDS	5399844	5399911	.	+	2	Parent=Os06t0206700-01
Chr06	irgsp1_rep	CDS	5400126	5400188	.	+	0	Parent=Os06t0206700-01
Chr06	irgsp1_rep	CDS	5400381	5400485	.	+	0	Parent=Os06t0206700-01
Chr06	irgsp1_rep	CDS	5400884	5400971	.	+	0	Parent=Os06t0206700-01
Chr06	irgsp1_rep	CDS	5401070	5401107	.	+	2	Parent=Os06t0206700-01
Chr06	irgsp1_rep	three_prime_UTR	5401108	5401177	.	+	.	Parent=Os06t0206700-01
Chr06	irgsp1_rep	three_prime_UTR	5401270	5401417	.	+	.	Parent=Os06t0206700-01
Chr06	irgsp1_rep	three_prime_UTR	5401618	5401790	.	+	.	Parent=Os06t0206700-01
Chr06	irgsp1_rep	three_prime_UTR	5402001	5402080	.	+	.	Parent=Os06t0206700-01
Chr06	irgsp1_rep	three_prime_UTR	5402492	5402719	.	+	.	Parent=Os06t0206700-01
Chr06	irgsp1_rep	three_prime_UTR	5403295	5403435	.	+	.	Parent=Os06t0206700-01
Chr06	irgsp1_rep	three_prime_UTR	5403524	5403649	.	+	.	Parent=Os06t0206700-01
Chr06	irgsp1_rep	three_prime_UTR	5403744	5403794	.	+	.	Parent=Os06t0206700-01
Chr06	irgsp1_rep	three_prime_UTR	5404997	5405143	.	+	.	Parent=Os06t0206700-01
Chr06	irgsp1_rep	three_prime_UTR	5405868	5406650	.	+	.	Parent=Os06t0206700-01
Chr06	irgsp1_rep	mRNA	5409030	5409864	.	+	.	ID=Os06t0206900-01;Name=Os06t0206900-01;Locus_id=Os06g0206900;Note=Conserved hypothetical protein.;Transcript_evidence=AK071212 (DDBJ%2C Best hit);ORF_evidence=A2YAH7 (UniProt);NIAS_FLcDNA=J023086C11;Expression=AK071212;TENOR=Os06t0206900-01;KEGG=Os06t0206900-01
Chr06	irgsp1_rep	five_prime_UTR	5409030	5409127	.	+	.	Parent=Os06t0206900-01
Chr06	irgsp1_rep	CDS	5409128	5409658	.	+	0	Parent=Os06t0206900-01
Chr06	irgsp1_rep	three_prime_UTR	5409659	5409864	.	+	.	Parent=Os06t0206900-01
Chr06	irgsp1_rep	mRNA	5420936	5427251	.	+	.	ID=Os06t0207000-01;Name=Os06t0207000-01;Locus_id=Os06g0207000;Note=Fumble domain containing protein.;Transcript_evidence=AK067115 (DDBJ%2C Best hit);ORF_evidence=B6SPI3 (UniProt);GO=Biological Process: coenzyme A biosynthetic process (GO:0015937),Molecular Function: pantothenate kinase activity (GO:0004594),Molecular Function: ATP binding (GO:0005524);InterPro=Type II pantothenate kinase (IPR004567);NIAS_FLcDNA=J013095O17;Expression=AK067115;TENOR=Os06t0207000-01;KEGG=Os06t0207000-01
Chr06	irgsp1_rep	five_prime_UTR	5420936	5421082	.	+	.	Parent=Os06t0207000-01
Chr06	irgsp1_rep	CDS	5421083	5421227	.	+	0	Parent=Os06t0207000-01
Chr06	irgsp1_rep	CDS	5421320	5421454	.	+	2	Parent=Os06t0207000-01
Chr06	irgsp1_rep	CDS	5421893	5421933	.	+	2	Parent=Os06t0207000-01
Chr06	irgsp1_rep	CDS	5422646	5422762	.	+	0	Parent=Os06t0207000-01
Chr06	irgsp1_rep	CDS	5422962	5423081	.	+	0	Parent=Os06t0207000-01
Chr06	irgsp1_rep	CDS	5423165	5423259	.	+	0	Parent=Os06t0207000-01
Chr06	irgsp1_rep	CDS	5423332	5423425	.	+	1	Parent=Os06t0207000-01
Chr06	irgsp1_rep	CDS	5423775	5423906	.	+	0	Parent=Os06t0207000-01
Chr06	irgsp1_rep	CDS	5424374	5424486	.	+	0	Parent=Os06t0207000-01
Chr06	irgsp1_rep	CDS	5424626	5424749	.	+	1	Parent=Os06t0207000-01
Chr06	irgsp1_rep	CDS	5425067	5425183	.	+	0	Parent=Os06t0207000-01
Chr06	irgsp1_rep	CDS	5425266	5425360	.	+	0	Parent=Os06t0207000-01
Chr06	irgsp1_rep	CDS	5425452	5425545	.	+	1	Parent=Os06t0207000-01
Chr06	irgsp1_rep	CDS	5425838	5425963	.	+	0	Parent=Os06t0207000-01
Chr06	irgsp1_rep	CDS	5426037	5426149	.	+	0	Parent=Os06t0207000-01
Chr06	irgsp1_rep	CDS	5426250	5426439	.	+	1	Parent=Os06t0207000-01
Chr06	irgsp1_rep	CDS	5426578	5426727	.	+	0	Parent=Os06t0207000-01
Chr06	irgsp1_rep	three_prime_UTR	5426728	5427251	.	+	.	Parent=Os06t0207000-01
Chr06	irgsp1_rep	mRNA	5431534	5432139	.	+	.	ID=Os06t0207200-01;Name=Os06t0207200-01;Locus_id=Os06g0207200;Note=Conserved hypothetical protein.;Transcript_evidence=AK062309 (DDBJ%2C Best hit);ORF_evidence=A3B9H2 (UniProt);NIAS_FLcDNA=001-101-B04;Expression=AK062309;TENOR=Os06t0207200-01;KEGG=Os06t0207200-01
Chr06	irgsp1_rep	five_prime_UTR	5431534	5431641	.	+	.	Parent=Os06t0207200-01
Chr06	irgsp1_rep	CDS	5431642	5431953	.	+	0	Parent=Os06t0207200-01
Chr06	irgsp1_rep	three_prime_UTR	5431954	5432139	.	+	.	Parent=Os06t0207200-01
Chr06	irgsp1_rep	mRNA	5449104	5451407	.	+	.	ID=Os06t0207500-01;Name=Os06t0207500-01;Locus_id=Os06g0207500;Oryzabase Gene Symbol Synonym(s)=OsTBL32%2C TBL32;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 32;Note=Hypothetical conserved gene.;Transcript_evidence=AK067995 (DDBJ%2C Best hit);ORF_evidence=Q69T67 (UniProt);NIAS_FLcDNA=J013128B19;Oryzabase=21487;TENOR=Os06t0207500-01
Chr06	irgsp1_rep	five_prime_UTR	5449104	5449294	.	+	.	Parent=Os06t0207500-01
Chr06	irgsp1_rep	CDS	5449295	5450949	.	+	0	Parent=Os06t0207500-01
Chr06	irgsp1_rep	CDS	5451044	5451236	.	+	1	Parent=Os06t0207500-01
Chr06	irgsp1_rep	CDS	5451334	5451407	.	+	0	Parent=Os06t0207500-01
Chr06	irgsp1_rep	mRNA	5449676	5453124	.	+	.	ID=Os06t0207500-02;Name=Os06t0207500-02;Locus_id=Os06g0207500;Oryzabase Gene Symbol Synonym(s)=OsTBL32%2C TBL32;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 32;Note=Protein of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=AK073911 (DDBJ%2C Best hit);ORF_evidence=D9I8D9 (UniProt);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=J033079B01;Oryzabase=21487;Expression=AK073911;TENOR=Os06t0207500-02;KEGG=Os06t0207500-02
Chr06	irgsp1_rep	CDS	5449676	5450949	.	+	0	Parent=Os06t0207500-02
Chr06	irgsp1_rep	CDS	5451044	5451236	.	+	1	Parent=Os06t0207500-02
Chr06	irgsp1_rep	CDS	5451334	5451527	.	+	0	Parent=Os06t0207500-02
Chr06	irgsp1_rep	CDS	5451626	5451784	.	+	1	Parent=Os06t0207500-02
Chr06	irgsp1_rep	CDS	5451866	5452208	.	+	1	Parent=Os06t0207500-02
Chr06	irgsp1_rep	three_prime_UTR	5452492	5452596	.	+	.	Parent=Os06t0207500-02
Chr06	irgsp1_rep	three_prime_UTR	5452808	5453124	.	+	.	Parent=Os06t0207500-02
Chr06	irgsp1_rep	mRNA	5451720	5452491	.	+	.	ID=Os06t0207500-03;Name=Os06t0207500-03;Locus_id=Os06g0207500;Oryzabase Gene Symbol Synonym(s)=OsTBL32%2C TBL32;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 32;Note=Similar to predicted protein.;Transcript_evidence=AK060283 (DDBJ%2C Best hit);ORF_evidence=D9I8D9 (UniProt);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=001-006-B08;Oryzabase=21487;Expression=AK060283;TENOR=Os06t0207500-03;KEGG=Os06t0207500-03
Chr06	irgsp1_rep	CDS	5451720	5451784	.	+	0	Parent=Os06t0207500-03
Chr06	irgsp1_rep	CDS	5451866	5452208	.	+	1	Parent=Os06t0207500-03
Chr06	irgsp1_rep	three_prime_UTR	5452209	5452491	.	+	.	Parent=Os06t0207500-03
Chr06	irgsp1_rep	mRNA	5457699	5459266	.	+	.	ID=Os06t0207600-00;Name=Os06t0207600-00;Locus_id=Os06g0207600;Note=Hypothetical conserved gene.;Transcript_evidence=AK332154 (DDBJ);ORF_evidence=Q69T66 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WRC (IPR014977);TENOR=Os06t0207600-00;KEGG=Os06t0207600-00
Chr06	irgsp1_rep	five_prime_UTR	5457699	5457824	.	+	.	Parent=Os06t0207600-00
Chr06	irgsp1_rep	CDS	5457825	5458040	.	+	0	Parent=Os06t0207600-00
Chr06	irgsp1_rep	CDS	5458171	5458280	.	+	0	Parent=Os06t0207600-00
Chr06	irgsp1_rep	CDS	5458834	5459266	.	+	1	Parent=Os06t0207600-00
Chr06	irgsp1_rep	mRNA	5461149	5470876	.	-	.	ID=Os06t0207700-01;Name=Os06t0207700-01;Locus_id=Os06g0207700;RAP-DB Gene Symbol Synonym(s)=OsCNGC13;RAP-DB Gene Name Synonym(s)=Cyclic nucleotide-gated ion channel 13;CGSNL Gene Symbol=CNGC11;CGSNL Gene Name=CYCLIC NUCLEOTIDE GATED CHANNEL 11;Oryzabase Gene Symbol Synonym(s)=OsCNGC11%2C OsCNGC13%2C CNGC13%2C SSS1-D;Oryzabase Gene Name Synonym(s)=Cyclic nucleotide gated channel 11%2C Cyclic nucleotide-gated ion channel 13%2C semi-seed-setting rate1-Dominant;Note=A member of the cyclic nucleotide gated channel family%2C Maternal sporophytic factor%2C Mediation of Ca<sup>2+</sup> inward current%2C Promotion of pollen tube growth and seed-setting;Transcript_evidence=AK241861;ORF_evidence=A3B9H5;GO=Biological Process: ion transport (GO:0006811),Biological Process: transmembrane transport (GO:0055085),Molecular Function: ion channel activity (GO:0005216),Cellular Component: membrane (GO:0016020);InterPro=Ion transport domain (IPR005821),RmlC-like jelly roll fold (IPR014710),Cyclic nucleotide-binding-like (IPR018490),Cyclic nucleotide-binding domain (IPR000595);NIAS_FLcDNA=J065216G16;Manual Curation=August 17%2C 2017;Literature_PMID=28708858;Oryzabase=15484;TENOR=Os06t0207700-01;KEGG=Os06t0207700-01;Subcellular location=plasma membrane (GO:0005886)
Chr06	irgsp1_rep	five_prime_UTR	5470755	5470876	.	-	.	Parent=Os06t0207700-01
Chr06	irgsp1_rep	five_prime_UTR	5470080	5470104	.	-	.	Parent=Os06t0207700-01
Chr06	irgsp1_rep	CDS	5469660	5470079	.	-	0	Parent=Os06t0207700-01
Chr06	irgsp1_rep	CDS	5468639	5468824	.	-	0	Parent=Os06t0207700-01
Chr06	irgsp1_rep	CDS	5468198	5468296	.	-	0	Parent=Os06t0207700-01
Chr06	irgsp1_rep	CDS	5467539	5467676	.	-	0	Parent=Os06t0207700-01
Chr06	irgsp1_rep	CDS	5466681	5466929	.	-	0	Parent=Os06t0207700-01
Chr06	irgsp1_rep	CDS	5465844	5466089	.	-	0	Parent=Os06t0207700-01
Chr06	irgsp1_rep	CDS	5465375	5465520	.	-	0	Parent=Os06t0207700-01
Chr06	irgsp1_rep	CDS	5465057	5465134	.	-	1	Parent=Os06t0207700-01
Chr06	irgsp1_rep	CDS	5464390	5464519	.	-	1	Parent=Os06t0207700-01
Chr06	irgsp1_rep	CDS	5463336	5463582	.	-	0	Parent=Os06t0207700-01
Chr06	irgsp1_rep	CDS	5463082	5463244	.	-	2	Parent=Os06t0207700-01
Chr06	irgsp1_rep	CDS	5461463	5461568	.	-	1	Parent=Os06t0207700-01
Chr06	irgsp1_rep	three_prime_UTR	5461149	5461462	.	-	.	Parent=Os06t0207700-01
Chr06	irgsp1_rep	mRNA	5461482	5470092	.	+	.	ID=Os06t0207783-00;Name=Os06t0207783-00;Locus_id=Os06g0207783;Note=Hypothetical protein.;Transcript_evidence=tplb0025a09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0207783-00
Chr06	irgsp1_rep	five_prime_UTR	5461482	5461579	.	+	.	Parent=Os06t0207783-00
Chr06	irgsp1_rep	five_prime_UTR	5463096	5463260	.	+	.	Parent=Os06t0207783-00
Chr06	irgsp1_rep	five_prime_UTR	5463351	5463567	.	+	.	Parent=Os06t0207783-00
Chr06	irgsp1_rep	five_prime_UTR	5464375	5464518	.	+	.	Parent=Os06t0207783-00
Chr06	irgsp1_rep	five_prime_UTR	5465056	5465138	.	+	.	Parent=Os06t0207783-00
Chr06	irgsp1_rep	five_prime_UTR	5465379	5465509	.	+	.	Parent=Os06t0207783-00
Chr06	irgsp1_rep	five_prime_UTR	5465832	5466090	.	+	.	Parent=Os06t0207783-00
Chr06	irgsp1_rep	five_prime_UTR	5466682	5466927	.	+	.	Parent=Os06t0207783-00
Chr06	irgsp1_rep	five_prime_UTR	5467537	5467684	.	+	.	Parent=Os06t0207783-00
Chr06	irgsp1_rep	five_prime_UTR	5468207	5468272	.	+	.	Parent=Os06t0207783-00
Chr06	irgsp1_rep	five_prime_UTR	5468618	5468815	.	+	.	Parent=Os06t0207783-00
Chr06	irgsp1_rep	five_prime_UTR	5469652	5469692	.	+	.	Parent=Os06t0207783-00
Chr06	irgsp1_rep	CDS	5469693	5469905	.	+	0	Parent=Os06t0207783-00
Chr06	irgsp1_rep	three_prime_UTR	5469906	5470092	.	+	.	Parent=Os06t0207783-00
Chr06	irgsp1_rep	mRNA	5477455	5478068	.	+	.	ID=Os06t0207866-00;Name=Os06t0207866-00;Locus_id=Os06g0207866;Note=Conserved hypothetical protein.;Transcript_evidence=BT085445 (DDBJ);ORF_evidence=B9FAZ8 (UniProt);TENOR=Os06t0207866-00
Chr06	irgsp1_rep	five_prime_UTR	5477455	5477512	.	+	.	Parent=Os06t0207866-00
Chr06	irgsp1_rep	CDS	5477513	5477830	.	+	0	Parent=Os06t0207866-00
Chr06	irgsp1_rep	three_prime_UTR	5477831	5478068	.	+	.	Parent=Os06t0207866-00
Chr06	irgsp1_rep	mRNA	5498604	5502946	.	-	.	ID=Os06t0207916-01;Name=Os06t0207916-01;Locus_id=Os06g0207916;Note=Non-protein coding transcript.;Transcript_evidence=AK241732 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065200A06;TENOR=Os06t0207916-01
Chr06	irgsp1_rep	exon	5502789	5502946	.	-	.	Parent=Os06t0207916-01
Chr06	irgsp1_rep	exon	5498604	5498681	.	-	.	Parent=Os06t0207916-01
Chr06	irgsp1_rep	mRNA	5489247	5490602	.	+	.	ID=Os06t0207950-00;Name=Os06t0207950-00;Locus_id=Os06g0207950;Note=Hypothetical gene.;Transcript_evidence=CT836248 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os06t0207950-00;KEGG=Os06t0207950-00
Chr06	irgsp1_rep	five_prime_UTR	5489247	5489397	.	+	.	Parent=Os06t0207950-00
Chr06	irgsp1_rep	CDS	5489398	5489613	.	+	0	Parent=Os06t0207950-00
Chr06	irgsp1_rep	three_prime_UTR	5489614	5489676	.	+	.	Parent=Os06t0207950-00
Chr06	irgsp1_rep	three_prime_UTR	5489806	5490602	.	+	.	Parent=Os06t0207950-00
Chr06	irgsp1_rep	mRNA	5499342	5502411	.	-	.	ID=Os06t0208100-01;Name=Os06t0208100-01;Locus_id=Os06g0208100;RAP-DB Gene Symbol Synonym(s)=Roc8;RAP-DB Gene Name Synonym(s)=Protein RICE OUTERMOST CELL-SPECIFIC 8;CGSNL Gene Symbol=ROC8;CGSNL Gene Name=RICE OUTMOST CELL-SPECIFIC GENE 8;Oryzabase Gene Symbol Synonym(s)=Roc8(t)%2C Roc8%2C GL2-8;Oryzabase Gene Name Synonym(s)=Rice outmost cell -specific gene 8(t)%2C Rice outermost cell-specific gene-8%2C Homeobox-leucine zipper protein ROC8%2C Homeodomain transcription factor ROC8%2C HD-ZIP protein ROC8%2C Protein RICE OUTERMOST CELL-SPECIFIC 8%2C GLABRA 2-like homeobox protein 8%2C Rice ooutmost cell-specific gene8;Note=HD zipper class IV family member%2C Transcriptional activator%2C Negative regulation of the size of bulliform cells%2C Positive regulation of leaf lignin biosynthesis;Transcript_evidence=AB101651 (truncated),Q69T58 (UniProt);ORF_evidence=Q69T58;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: lipid binding (GO:0008289),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox-like domain superfamily (IPR009057),Homeobox domain (IPR001356),START domain (IPR002913),Homeobox%2C conserved site (IPR017970);Manual Curation=June 23%2C 2020;Literature_PMID=32559019;Oryzabase=20551;Expression=AB101651;TENOR=Os06t0208100-00,Os06t0207966-00;KEGG=Os06t0208100-00,Os06t0207966-00;Subcellular location=nucleus (GO:0005634)
Chr06	irgsp1_rep	CDS	5502317	5502411	.	-	0	Parent=Os06t0208100-01
Chr06	irgsp1_rep	CDS	5502070	5502187	.	-	1	Parent=Os06t0208100-01
Chr06	irgsp1_rep	CDS	5501742	5501927	.	-	0	Parent=Os06t0208100-01
Chr06	irgsp1_rep	CDS	5501156	5501623	.	-	0	Parent=Os06t0208100-01
Chr06	irgsp1_rep	CDS	5500984	5501082	.	-	0	Parent=Os06t0208100-01
Chr06	irgsp1_rep	CDS	5500669	5500881	.	-	0	Parent=Os06t0208100-01
Chr06	irgsp1_rep	CDS	5500406	5500583	.	-	0	Parent=Os06t0208100-01
Chr06	irgsp1_rep	CDS	5500045	5500307	.	-	2	Parent=Os06t0208100-01
Chr06	irgsp1_rep	CDS	5499883	5499972	.	-	0	Parent=Os06t0208100-01
Chr06	irgsp1_rep	CDS	5499342	5499764	.	-	0	Parent=Os06t0208100-01
Chr06	irgsp1_rep	mRNA	5518864	5519710	.	-	.	ID=Os06t0208151-00;Name=Os06t0208151-00;Locus_id=Os06g0208151;Note=Similar to quinone oxidoreductase.;Transcript_evidence=BT040177 (DDBJ);ORF_evidence=B8AEF1 (UniProt);InterPro=GroES-like (IPR011032);TENOR=Os06t0208151-00;KEGG=Os06t0208151-00 (EC:1.6.5.5)
Chr06	irgsp1_rep	five_prime_UTR	5519439	5519710	.	-	.	Parent=Os06t0208151-00
Chr06	irgsp1_rep	CDS	5519253	5519438	.	-	0	Parent=Os06t0208151-00
Chr06	irgsp1_rep	CDS	5518864	5519196	.	-	0	Parent=Os06t0208151-00
Chr06	irgsp1_rep	mRNA	5522541	5523474	.	+	.	ID=Os06t0208200-01;Name=Os06t0208200-01;Locus_id=Os06g0208200;Note=Conserved hypothetical protein.;Transcript_evidence=AK242462 (DDBJ%2C Best hit);ORF_evidence=NP_001174659.1 (RefSeq);NIAS_FLcDNA=J080301E22;TENOR=Os06t0208200-01;KEGG=Os06t0208200-01
Chr06	irgsp1_rep	five_prime_UTR	5522541	5522661	.	+	.	Parent=Os06t0208200-01
Chr06	irgsp1_rep	CDS	5522662	5522829	.	+	0	Parent=Os06t0208200-01
Chr06	irgsp1_rep	CDS	5522922	5523176	.	+	0	Parent=Os06t0208200-01
Chr06	irgsp1_rep	three_prime_UTR	5523177	5523474	.	+	.	Parent=Os06t0208200-01
Chr06	irgsp1_rep	mRNA	5523839	5526169	.	-	.	ID=Os06t0208300-01;Name=Os06t0208300-01;Locus_id=Os06g0208300;Note=KOW domain containing protein.;Transcript_evidence=AK059092 (DDBJ%2C Best hit);ORF_evidence=A6N0S0 (UniProt);InterPro=KOW (IPR005824);NIAS_FLcDNA=001-022-C01;Expression=AK059092;TENOR=Os06t0208300-01;KEGG=Os06t0208300-01
Chr06	irgsp1_rep	five_prime_UTR	5526082	5526169	.	-	.	Parent=Os06t0208300-01
Chr06	irgsp1_rep	CDS	5526066	5526081	.	-	0	Parent=Os06t0208300-01
Chr06	irgsp1_rep	CDS	5525941	5525989	.	-	2	Parent=Os06t0208300-01
Chr06	irgsp1_rep	CDS	5525778	5525869	.	-	1	Parent=Os06t0208300-01
Chr06	irgsp1_rep	CDS	5525128	5525194	.	-	2	Parent=Os06t0208300-01
Chr06	irgsp1_rep	CDS	5524916	5524970	.	-	1	Parent=Os06t0208300-01
Chr06	irgsp1_rep	CDS	5524715	5524826	.	-	0	Parent=Os06t0208300-01
Chr06	irgsp1_rep	CDS	5524469	5524612	.	-	2	Parent=Os06t0208300-01
Chr06	irgsp1_rep	CDS	5524258	5524355	.	-	2	Parent=Os06t0208300-01
Chr06	irgsp1_rep	CDS	5523926	5524168	.	-	0	Parent=Os06t0208300-01
Chr06	irgsp1_rep	three_prime_UTR	5523839	5523925	.	-	.	Parent=Os06t0208300-01
Chr06	irgsp1_rep	mRNA	5555007	5559074	.	+	.	ID=Os06t0208700-01;Name=Os06t0208700-01;Locus_id=Os06g0208700;Oryzabase Gene Symbol Synonym(s)=OsPFA-DSP3;Oryzabase Gene Name Synonym(s)=plant and fungi atypical dual-specificity phosphatase 3;Note=Similar to Dual-specificity phosphatase protein.;Transcript_evidence=AK065860 (DDBJ%2C Best hit);ORF_evidence=Q6DL00 (UniProt);GO=Molecular Function: protein tyrosine phosphatase activity (GO:0004725);InterPro=Protein-tyrosine phosphatase%2C SIW14-like (IPR004861),Protein-tyrosine phosphatase%2C dual specificity phosphatase%2C eukaryotic (IPR020428);NIAS_FLcDNA=J013043L18;Oryzabase=10261;Expression=AK065860;TENOR=Os06t0208700-01;KEGG=Os06t0208700-01
Chr06	irgsp1_rep	five_prime_UTR	5555007	5555121	.	+	.	Parent=Os06t0208700-01
Chr06	irgsp1_rep	CDS	5555122	5555432	.	+	0	Parent=Os06t0208700-01
Chr06	irgsp1_rep	CDS	5555566	5555719	.	+	1	Parent=Os06t0208700-01
Chr06	irgsp1_rep	three_prime_UTR	5555720	5558307	.	+	.	Parent=Os06t0208700-01
Chr06	irgsp1_rep	three_prime_UTR	5558397	5558440	.	+	.	Parent=Os06t0208700-01
Chr06	irgsp1_rep	three_prime_UTR	5558549	5559074	.	+	.	Parent=Os06t0208700-01
Chr06	irgsp1_rep	mRNA	5559909	5563097	.	+	.	ID=Os06t0208800-01;Name=Os06t0208800-01;Locus_id=Os06g0208800;RAP-DB Gene Symbol Synonym(s)=LYP6%2C Os-LYP6%2C OsLYP6;RAP-DB Gene Name Synonym(s)=lysin motif-containing protein 6%2C lysin motif (LysM)-containing protein 6%2C LysM-containing protein 6;Oryzabase Gene Symbol Synonym(s)=LYP6%2C Os-LYP6%2C OsLYP6;Oryzabase Gene Name Synonym(s)=lysin motif-containing protein 6%2C lysin motif (LysM)-containing protein 6%2C LysM-containing protein 6;Note=Lysin motif-containing protein%2C Pattern recognition receptor%2C Peptidoglycan and chitin perception in innate immunity;Transcript_evidence=Inferred from literature;ORF_evidence=Q69T51;InterPro=Aspartate/glutamate/uridylate kinase (IPR001048),LysM domain (IPR018392);Manual Curation=June 25%2C 2014;Literature_PMID=22872757;Oryzabase=11159;TENOR=Os06t0208800-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	5559909	5560003	.	+	.	Parent=Os06t0208800-01
Chr06	irgsp1_rep	CDS	5560004	5560679	.	+	0	Parent=Os06t0208800-01
Chr06	irgsp1_rep	CDS	5561388	5561505	.	+	2	Parent=Os06t0208800-01
Chr06	irgsp1_rep	CDS	5561593	5561754	.	+	1	Parent=Os06t0208800-01
Chr06	irgsp1_rep	CDS	5561833	5561864	.	+	1	Parent=Os06t0208800-01
Chr06	irgsp1_rep	CDS	5562589	5562830	.	+	2	Parent=Os06t0208800-01
Chr06	irgsp1_rep	three_prime_UTR	5562831	5563097	.	+	.	Parent=Os06t0208800-01
Chr06	irgsp1_rep	mRNA	5569929	5571293	.	-	.	ID=Os06t0208951-00;Name=Os06t0208951-00;Locus_id=Os06g0208951;Note=Conserved hypothetical protein.;Transcript_evidence=EU943155 (DDBJ);ORF_evidence=NP_001057106.1 (RefSeq);TENOR=Os06t0208951-00
Chr06	irgsp1_rep	CDS	5569929	5571293	.	-	0	Parent=Os06t0208951-00
Chr06	irgsp1_rep	mRNA	5569938	5571302	.	+	.	ID=Os06t0209100-00;Name=Os06t0209100-00;Locus_id=Os06g0209100;Note=Peptidase A1 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001057106.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);TENOR=Os06t0209100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	5569938	5571302	.	+	0	Parent=Os06t0209100-00
Chr06	irgsp1_rep	mRNA	5579017	5583890	.	-	.	ID=Os06t0209300-01;Name=Os06t0209300-01;Locus_id=Os06g0209300;CGSNL Gene Symbol=DLN160;CGSNL Gene Name=DLN REPRESSOR 160;Oryzabase Gene Symbol Synonym(s)=OsDLN160;Oryzabase Gene Name Synonym(s)=DLN repressor 160%2C DLN motif protein 160;Note=Hypothetical conserved gene.;Transcript_evidence=AK066363 (DDBJ%2C Best hit);ORF_evidence=Q69T47 (UniProt);NIAS_FLcDNA=J013064D24;Oryzabase=23205;Expression=AK066363;TENOR=Os06t0209300-01;KEGG=Os06t0209300-01
Chr06	irgsp1_rep	five_prime_UTR	5583782	5583890	.	-	.	Parent=Os06t0209300-01
Chr06	irgsp1_rep	CDS	5583679	5583781	.	-	0	Parent=Os06t0209300-01
Chr06	irgsp1_rep	CDS	5582632	5582717	.	-	2	Parent=Os06t0209300-01
Chr06	irgsp1_rep	CDS	5582186	5582548	.	-	0	Parent=Os06t0209300-01
Chr06	irgsp1_rep	CDS	5582021	5582104	.	-	0	Parent=Os06t0209300-01
Chr06	irgsp1_rep	CDS	5581394	5581514	.	-	0	Parent=Os06t0209300-01
Chr06	irgsp1_rep	CDS	5580023	5580212	.	-	2	Parent=Os06t0209300-01
Chr06	irgsp1_rep	CDS	5579834	5579937	.	-	1	Parent=Os06t0209300-01
Chr06	irgsp1_rep	CDS	5579539	5579748	.	-	2	Parent=Os06t0209300-01
Chr06	irgsp1_rep	CDS	5579135	5579388	.	-	2	Parent=Os06t0209300-01
Chr06	irgsp1_rep	CDS	5579017	5579049	.	-	0	Parent=Os06t0209300-01
Chr06	irgsp1_rep	mRNA	5575897	5580091	.	-	.	ID=Os06t0209300-02;Name=Os06t0209300-02;Locus_id=Os06g0209300;CGSNL Gene Symbol=DLN160;CGSNL Gene Name=DLN REPRESSOR 160;Oryzabase Gene Symbol Synonym(s)=OsDLN160;Oryzabase Gene Name Synonym(s)=DLN repressor 160%2C DLN motif protein 160;Note=Conserved hypothetical protein.;Transcript_evidence=AK065500 (DDBJ%2C Best hit);ORF_evidence=Q69T47 (UniProt);NIAS_FLcDNA=J013030I08;Oryzabase=23205;TENOR=Os06t0209300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	5580091	5580091	.	-	.	Parent=Os06t0209300-02
Chr06	irgsp1_rep	CDS	5580023	5580090	.	-	0	Parent=Os06t0209300-02
Chr06	irgsp1_rep	CDS	5579834	5579937	.	-	1	Parent=Os06t0209300-02
Chr06	irgsp1_rep	CDS	5579539	5579748	.	-	2	Parent=Os06t0209300-02
Chr06	irgsp1_rep	CDS	5579349	5579407	.	-	2	Parent=Os06t0209300-02
Chr06	irgsp1_rep	three_prime_UTR	5579135	5579348	.	-	.	Parent=Os06t0209300-02
Chr06	irgsp1_rep	three_prime_UTR	5578996	5579049	.	-	.	Parent=Os06t0209300-02
Chr06	irgsp1_rep	three_prime_UTR	5578705	5578920	.	-	.	Parent=Os06t0209300-02
Chr06	irgsp1_rep	three_prime_UTR	5578417	5578635	.	-	.	Parent=Os06t0209300-02
Chr06	irgsp1_rep	three_prime_UTR	5578286	5578339	.	-	.	Parent=Os06t0209300-02
Chr06	irgsp1_rep	three_prime_UTR	5578084	5578149	.	-	.	Parent=Os06t0209300-02
Chr06	irgsp1_rep	three_prime_UTR	5577846	5577983	.	-	.	Parent=Os06t0209300-02
Chr06	irgsp1_rep	three_prime_UTR	5577611	5577667	.	-	.	Parent=Os06t0209300-02
Chr06	irgsp1_rep	three_prime_UTR	5577316	5577375	.	-	.	Parent=Os06t0209300-02
Chr06	irgsp1_rep	three_prime_UTR	5576655	5577038	.	-	.	Parent=Os06t0209300-02
Chr06	irgsp1_rep	three_prime_UTR	5575897	5576539	.	-	.	Parent=Os06t0209300-02
Chr06	irgsp1_rep	mRNA	5575897	5576852	.	-	.	ID=Os06t0209300-03;Name=Os06t0209300-03;Locus_id=Os06g0209300;CGSNL Gene Symbol=DLN160;CGSNL Gene Name=DLN REPRESSOR 160;Oryzabase Gene Symbol Synonym(s)=OsDLN160;Oryzabase Gene Name Synonym(s)=DLN repressor 160%2C DLN motif protein 160;Note=Hypothetical conserved gene.;Transcript_evidence=AK062037 (DDBJ%2C Best hit);ORF_evidence=Q69T47 (UniProt);NIAS_FLcDNA=001-043-H10;Oryzabase=23205;Expression=AK062037;TENOR=Os06t0209300-03;KEGG=Os06t0209300-03
Chr06	irgsp1_rep	CDS	5576655	5576852	.	-	0	Parent=Os06t0209300-03
Chr06	irgsp1_rep	CDS	5576444	5576539	.	-	0	Parent=Os06t0209300-03
Chr06	irgsp1_rep	three_prime_UTR	5575897	5576443	.	-	.	Parent=Os06t0209300-03
Chr06	irgsp1_rep	mRNA	5586606	5586940	.	-	.	ID=Os06t0209400-00;Name=Os06t0209400-00;Locus_id=Os06g0209400;Note=Conserved hypothetical protein.;Transcript_evidence=AK376937 (DDBJ);ORF_evidence=NP_001057108.2 (RefSeq);TENOR=Os06t0209400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	5586611	5586940	.	-	0	Parent=Os06t0209400-00
Chr06	irgsp1_rep	three_prime_UTR	5586606	5586610	.	-	.	Parent=Os06t0209400-00
Chr06	irgsp1_rep	mRNA	5589287	5594728	.	+	.	ID=Os06t0209500-01;Name=Os06t0209500-01;Locus_id=Os06g0209500;Note=Non-protein coding transcript.;Transcript_evidence=AK059200 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-024-A08;TENOR=Os06t0209500-01
Chr06	irgsp1_rep	exon	5589287	5589350	.	+	.	Parent=Os06t0209500-01
Chr06	irgsp1_rep	exon	5594383	5594728	.	+	.	Parent=Os06t0209500-01
Chr06	irgsp1_rep	mRNA	5601748	5604982	.	+	.	ID=Os06t0209700-01;Name=Os06t0209700-01;Locus_id=Os06g0209700;Note=Conserved hypothetical protein.;Transcript_evidence=AK063529 (DDBJ%2C Best hit);ORF_evidence=B9FS46 (UniProt);NIAS_FLcDNA=001-117-B01;TENOR=Os06t0209700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	5601748	5601833	.	+	.	Parent=Os06t0209700-01
Chr06	irgsp1_rep	CDS	5601834	5602092	.	+	0	Parent=Os06t0209700-01
Chr06	irgsp1_rep	CDS	5603876	5603937	.	+	2	Parent=Os06t0209700-01
Chr06	irgsp1_rep	three_prime_UTR	5603938	5604982	.	+	.	Parent=Os06t0209700-01
Chr06	irgsp1_rep	mRNA	5614074	5616716	.	+	.	ID=Os06t0210000-00;Name=Os06t0210000-00;Locus_id=Os06g0210000;Note=Protein of unknown function DUF6 domain containing protein.;Transcript_evidence=AK333259 (DDBJ);ORF_evidence=NP_001148990.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);TENOR=Os06t0210000-00;KEGG=Os06t0210000-00
Chr06	irgsp1_rep	five_prime_UTR	5614074	5614165	.	+	.	Parent=Os06t0210000-00
Chr06	irgsp1_rep	CDS	5614166	5614356	.	+	0	Parent=Os06t0210000-00
Chr06	irgsp1_rep	CDS	5615412	5615474	.	+	1	Parent=Os06t0210000-00
Chr06	irgsp1_rep	CDS	5615604	5616150	.	+	1	Parent=Os06t0210000-00
Chr06	irgsp1_rep	CDS	5616258	5616409	.	+	0	Parent=Os06t0210000-00
Chr06	irgsp1_rep	CDS	5616500	5616716	.	+	1	Parent=Os06t0210000-00
Chr06	irgsp1_rep	mRNA	5619150	5621697	.	+	.	ID=Os06t0210100-01;Name=Os06t0210100-01;Locus_id=Os06g0210100;Note=Similar to Transmembrane emp24 domain-containing protein 10.;Transcript_evidence=AK120435 (DDBJ%2C Best hit);ORF_evidence=B4FVH9 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: integral to membrane (GO:0016021);InterPro=GOLD (IPR009038);NIAS_FLcDNA=J013097P16;TENOR=Os06t0210100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	5619150	5619218	.	+	.	Parent=Os06t0210100-01
Chr06	irgsp1_rep	CDS	5619219	5619416	.	+	0	Parent=Os06t0210100-01
Chr06	irgsp1_rep	CDS	5620603	5620812	.	+	0	Parent=Os06t0210100-01
Chr06	irgsp1_rep	CDS	5620918	5620994	.	+	0	Parent=Os06t0210100-01
Chr06	irgsp1_rep	CDS	5621387	5621531	.	+	1	Parent=Os06t0210100-01
Chr06	irgsp1_rep	three_prime_UTR	5621532	5621697	.	+	.	Parent=Os06t0210100-01
Chr06	irgsp1_rep	mRNA	5621964	5625687	.	+	.	ID=Os06t0210200-01;Name=Os06t0210200-01;Locus_id=Os06g0210200;Note=Peptidase M20 domain containing protein.;Transcript_evidence=AK069709 (DDBJ%2C Best hit),AK060502 (DDBJ%2C Best hit);ORF_evidence=NP_001150325.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: metabolic process (GO:0008152),Cellular Component: cytoplasm (GO:0005737),Molecular Function: aminoacylase activity (GO:0004046),Molecular Function: metallopeptidase activity (GO:0008237),Molecular Function: hydrolase activity (GO:0016787);InterPro=ArgE/DapE/ACY1/CPG2/YscS%2C conserved site (IPR001261),Peptidase M20 (IPR002933),Twin-arginine translocation pathway%2C signal sequence (IPR006311),N-acyl-L-amino-acid amidohydrolase (IPR010159),Peptidase M20%2C dimerisation (IPR011650);NIAS_FLcDNA=J023028L23,001-018-D07;TENOR=Os06t0210200-01
Chr06	irgsp1_rep	five_prime_UTR	5621964	5621991	.	+	.	Parent=Os06t0210200-01
Chr06	irgsp1_rep	CDS	5621992	5622873	.	+	0	Parent=Os06t0210200-01
Chr06	irgsp1_rep	CDS	5624555	5624692	.	+	0	Parent=Os06t0210200-01
Chr06	irgsp1_rep	CDS	5624801	5625040	.	+	0	Parent=Os06t0210200-01
Chr06	irgsp1_rep	CDS	5625119	5625199	.	+	0	Parent=Os06t0210200-01
Chr06	irgsp1_rep	three_prime_UTR	5625200	5625687	.	+	.	Parent=Os06t0210200-01
Chr06	irgsp1_rep	mRNA	5633354	5635721	.	-	.	ID=Os06t0210400-01;Name=Os06t0210400-01;Locus_id=Os06g0210400;Note=Concanavalin A-like lectin/glucanase%2C subgroup domain containing protein.;Transcript_evidence=AK110453 (DDBJ%2C Best hit);ORF_evidence=B9FS49 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-166-E10;Expression=AK110453;TENOR=Os06t0210400-01;KEGG=Os06t0210400-01
Chr06	irgsp1_rep	five_prime_UTR	5635626	5635721	.	-	.	Parent=Os06t0210400-01
Chr06	irgsp1_rep	CDS	5633493	5635625	.	-	0	Parent=Os06t0210400-01
Chr06	irgsp1_rep	three_prime_UTR	5633354	5633492	.	-	.	Parent=Os06t0210400-01
Chr06	irgsp1_rep	mRNA	5638279	5641331	.	+	.	ID=Os06t0210500-01;Name=Os06t0210500-01;Locus_id=Os06g0210500;CGSNL Gene Symbol=PT18;CGSNL Gene Name=PHOSPHATE TRANSPORTER 18;Oryzabase Gene Symbol Synonym(s)=OsPT18;Oryzabase Gene Name Synonym(s)=phosphate transporter 18;Note=Similar to Mitochondrial phosphate transporter.;Transcript_evidence=AK066979 (DDBJ%2C Best hit);ORF_evidence=NP_001104842.1 (RefSeq);InterPro=Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J013090N24;Oryzabase=21403;Expression=AK066979;TENOR=Os06t0210500-01;KEGG=Os06t0210500-01
Chr06	irgsp1_rep	five_prime_UTR	5638279	5638363	.	+	.	Parent=Os06t0210500-01
Chr06	irgsp1_rep	CDS	5638364	5638654	.	+	0	Parent=Os06t0210500-01
Chr06	irgsp1_rep	CDS	5639275	5639636	.	+	0	Parent=Os06t0210500-01
Chr06	irgsp1_rep	CDS	5639759	5639802	.	+	1	Parent=Os06t0210500-01
Chr06	irgsp1_rep	CDS	5640507	5640721	.	+	2	Parent=Os06t0210500-01
Chr06	irgsp1_rep	CDS	5640826	5640950	.	+	0	Parent=Os06t0210500-01
Chr06	irgsp1_rep	CDS	5641045	5641114	.	+	1	Parent=Os06t0210500-01
Chr06	irgsp1_rep	three_prime_UTR	5641115	5641331	.	+	.	Parent=Os06t0210500-01
Chr06	irgsp1_rep	mRNA	5657850	5661263	.	+	.	ID=Os06t0210900-01;Name=Os06t0210900-01;Locus_id=Os06g0210900;Note=Lipase%2C class 3 family protein.;Transcript_evidence=AK110332 (DDBJ%2C Best hit);ORF_evidence=A2YAK4 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921);NIAS_FLcDNA=002-164-E01;Expression=AK110332;TENOR=Os06t0210900-01;KEGG=Os06t0210900-01
Chr06	irgsp1_rep	five_prime_UTR	5657850	5657932	.	+	.	Parent=Os06t0210900-01
Chr06	irgsp1_rep	CDS	5657933	5658263	.	+	0	Parent=Os06t0210900-01
Chr06	irgsp1_rep	CDS	5659728	5659921	.	+	2	Parent=Os06t0210900-01
Chr06	irgsp1_rep	CDS	5660041	5660074	.	+	0	Parent=Os06t0210900-01
Chr06	irgsp1_rep	CDS	5660169	5661079	.	+	2	Parent=Os06t0210900-01
Chr06	irgsp1_rep	three_prime_UTR	5661080	5661263	.	+	.	Parent=Os06t0210900-01
Chr06	irgsp1_rep	mRNA	5677157	5681985	.	+	.	ID=Os06t0211200-01;Name=Os06t0211200-01;Locus_id=Os06g0211200;RAP-DB Gene Symbol Synonym(s)=BZIP46%2C ABL1%2C bZIP46%2C OsABL1%2C OsbZIP46%2C OsAREB8%2C OsABF2%2C OsABF3;RAP-DB Gene Name Synonym(s)=b-ZIP TRANSCRIPTION FACTOR 46%2C ABI5-like1%2C bZIP transcription factor 46%2C AREB/ABF-family transcription factor OsAREB8%2C AREB/ABF-family protein 8%2C ABA-responsive element binding factor 2;CGSNL Gene Symbol=BZIP46;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 46;Oryzabase Gene Symbol Synonym(s)=ABL1%2C bZIP46%2C OsABL1%2C OsbZIP46%2C OsAREB8%2C OsABF2%2C OsABF3%2C OsbZIP46CA1%2C OsZIP46%2C ZIP46;Oryzabase Gene Name Synonym(s)=ABI5-like1%2C bZIP transcription factor 46%2C AREB/ABF-family transcription factor OsAREB8%2C AREB/ABF-family protein 8%2C ABA-responsive element binding factor 2;Note=bZIP transcription factor%2C Positive regulator of ABA signaling%2C Drought tolerance;Transcript_evidence=AK103188;ORF_evidence=Q69TW5;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Basic-leucine zipper domain (IPR004827);NIAS_FLcDNA=J033121M03;Manual Curation=September 10%2C 2014;Literature_PMID=22301130;Oryzabase=9294;TENOR=Os06t0211200-01;KEGG=Os06t0211200-01
Chr06	irgsp1_rep	five_prime_UTR	5677157	5677359	.	+	.	Parent=Os06t0211200-01
Chr06	irgsp1_rep	CDS	5677360	5678151	.	+	0	Parent=Os06t0211200-01
Chr06	irgsp1_rep	CDS	5678845	5678916	.	+	0	Parent=Os06t0211200-01
Chr06	irgsp1_rep	CDS	5679513	5679542	.	+	0	Parent=Os06t0211200-01
Chr06	irgsp1_rep	CDS	5681498	5681574	.	+	0	Parent=Os06t0211200-01
Chr06	irgsp1_rep	CDS	5681664	5681667	.	+	1	Parent=Os06t0211200-01
Chr06	irgsp1_rep	three_prime_UTR	5681668	5681985	.	+	.	Parent=Os06t0211200-01
Chr06	irgsp1_rep	mRNA	5677288	5682033	.	+	.	ID=Os06t0211200-02;Name=Os06t0211200-02;Locus_id=Os06g0211200;CGSNL Gene Symbol=BZIP46;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 46;Oryzabase Gene Symbol Synonym(s)=ABL1%2C bZIP46%2C OsABL1%2C OsbZIP46%2C OsAREB8%2C OsABF2%2C OsABF3%2C OsbZIP46CA1%2C OsZIP46%2C ZIP46;Oryzabase Gene Name Synonym(s)=ABI5-like1%2C bZIP transcription factor 46%2C AREB/ABF-family transcription factor OsAREB8%2C AREB/ABF-family protein 8%2C ABA-responsive element binding factor 2;Note=Similar to Abscisic acid responsive elements-binding factor (ABA-responsive element binding protein 1) (AREB1).;Transcript_evidence=AK105312 (DDBJ%2C Best hit);ORF_evidence=A1XXJ0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);NIAS_FLcDNA=001-117-D06;Oryzabase=9294;TENOR=Os06t0211200-02;KEGG=Os06t0211200-02
Chr06	irgsp1_rep	five_prime_UTR	5677288	5677359	.	+	.	Parent=Os06t0211200-02
Chr06	irgsp1_rep	CDS	5677360	5678151	.	+	0	Parent=Os06t0211200-02
Chr06	irgsp1_rep	CDS	5678845	5678916	.	+	0	Parent=Os06t0211200-02
Chr06	irgsp1_rep	CDS	5679513	5679542	.	+	0	Parent=Os06t0211200-02
Chr06	irgsp1_rep	CDS	5681498	5681574	.	+	0	Parent=Os06t0211200-02
Chr06	irgsp1_rep	CDS	5681664	5681667	.	+	1	Parent=Os06t0211200-02
Chr06	irgsp1_rep	three_prime_UTR	5681668	5682033	.	+	.	Parent=Os06t0211200-02
Chr06	irgsp1_rep	mRNA	5688697	5690594	.	+	.	ID=Os06t0211300-01;Name=Os06t0211300-01;Locus_id=Os06g0211300;Note=Short-chain dehydrogenase/reductase SDR domain containing protein.;Transcript_evidence=AK060015 (DDBJ%2C Best hit);ORF_evidence=A6MZU4 (UniProt);GO=Molecular Function: sterol binding (GO:0032934);InterPro=SCP2 sterol-binding domain (IPR003033);NIAS_FLcDNA=006-302-F07;Expression=AK060015;TENOR=Os06t0211300-01;KEGG=Os06t0211300-01 (EC:1.1.1.35%2C EC:4.2.1.107)
Chr06	irgsp1_rep	five_prime_UTR	5688697	5688801	.	+	.	Parent=Os06t0211300-01
Chr06	irgsp1_rep	CDS	5688802	5688927	.	+	0	Parent=Os06t0211300-01
Chr06	irgsp1_rep	CDS	5689014	5689074	.	+	0	Parent=Os06t0211300-01
Chr06	irgsp1_rep	CDS	5689162	5689261	.	+	2	Parent=Os06t0211300-01
Chr06	irgsp1_rep	CDS	5689659	5689740	.	+	1	Parent=Os06t0211300-01
Chr06	irgsp1_rep	three_prime_UTR	5689741	5690088	.	+	.	Parent=Os06t0211300-01
Chr06	irgsp1_rep	three_prime_UTR	5690218	5690594	.	+	.	Parent=Os06t0211300-01
Chr06	irgsp1_rep	mRNA	5691753	5694649	.	+	.	ID=Os06t0211500-00;Name=Os06t0211500-00;Locus_id=Os06g0211500;Note=Similar to GRAS family transcription factor containing protein.;Transcript_evidence=EU969816 (DDBJ);ORF_evidence=NP_001147776.1 (RefSeq);InterPro=Transcription factor GRAS (IPR005202);TENOR=Os06t0211500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	5691753	5692030	.	+	.	Parent=Os06t0211500-00
Chr06	irgsp1_rep	five_prime_UTR	5694013	5694073	.	+	.	Parent=Os06t0211500-00
Chr06	irgsp1_rep	CDS	5694074	5694649	.	+	0	Parent=Os06t0211500-00
Chr06	irgsp1_rep	mRNA	5701639	5704991	.	+	.	ID=Os06t0211600-01;Name=Os06t0211600-01;Locus_id=Os06g0211600;Note=Similar to Galactoside 2-alpha-L-fucosyltransferase (EC 2.4.1.69) (Xyloglucan alpha-(1%2C2)-fucosyltransferase) (PsFT1).;Transcript_evidence=AK073279 (DDBJ%2C Best hit);ORF_evidence=A2YAL0 (UniProt);GO=Biological Process: cell wall biogenesis (GO:0042546),Cellular Component: membrane (GO:0016020),Molecular Function: galactoside 2-alpha-L-fucosyltransferase activity (GO:0008107);InterPro=Xyloglucan fucosyltransferase (IPR004938);NIAS_FLcDNA=J033024H19;Expression=AK073279;TENOR=Os06t0211600-01;KEGG=Os06t0211600-01 (EC:2.4.1.69)
Chr06	irgsp1_rep	five_prime_UTR	5701639	5701648	.	+	.	Parent=Os06t0211600-01
Chr06	irgsp1_rep	CDS	5701649	5701904	.	+	0	Parent=Os06t0211600-01
Chr06	irgsp1_rep	CDS	5703485	5704926	.	+	2	Parent=Os06t0211600-01
Chr06	irgsp1_rep	three_prime_UTR	5704927	5704991	.	+	.	Parent=Os06t0211600-01
Chr06	irgsp1_rep	mRNA	5705391	5707866	.	-	.	ID=Os06t0211700-00;Name=Os06t0211700-00;Locus_id=Os06g0211700;Note=Xyloglucan fucosyltransferase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001057121.1 (RefSeq);GO=Biological Process: cell wall biogenesis (GO:0042546),Cellular Component: membrane (GO:0016020),Molecular Function: galactoside 2-alpha-L-fucosyltransferase activity (GO:0008107);InterPro=Xyloglucan fucosyltransferase (IPR004938);TENOR=Os06t0211700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	5707729	5707866	.	-	0	Parent=Os06t0211700-00
Chr06	irgsp1_rep	CDS	5705391	5706731	.	-	0	Parent=Os06t0211700-00
Chr06	irgsp1_rep	mRNA	5712154	5714608	.	-	.	ID=Os06t0212100-01;Name=Os06t0212100-01;Locus_id=Os06g0212100;Note=Similar to Galactoside 2-alpha-L-fucosyltransferase (EC 2.4.1.69) (Xyloglucan alpha-(1%2C2)-fucosyltransferase) (PsFT1).;Transcript_evidence=AK103086 (DDBJ%2C Best hit);ORF_evidence=A2YAL4 (UniProt);GO=Biological Process: cell wall biogenesis (GO:0042546),Cellular Component: membrane (GO:0016020),Molecular Function: galactoside 2-alpha-L-fucosyltransferase activity (GO:0008107);InterPro=Xyloglucan fucosyltransferase (IPR004938);NIAS_FLcDNA=J033118I03;Expression=AK103086;TENOR=Os06t0212100-01;KEGG=Os06t0212100-01 (EC:2.4.1.69)
Chr06	irgsp1_rep	five_prime_UTR	5714570	5714608	.	-	.	Parent=Os06t0212100-01
Chr06	irgsp1_rep	CDS	5714401	5714569	.	-	0	Parent=Os06t0212100-01
Chr06	irgsp1_rep	CDS	5712313	5713814	.	-	2	Parent=Os06t0212100-01
Chr06	irgsp1_rep	three_prime_UTR	5712154	5712312	.	-	.	Parent=Os06t0212100-01
Chr06	irgsp1_rep	mRNA	5718733	5720698	.	-	.	ID=Os06t0212300-00;Name=Os06t0212300-00;Locus_id=Os06g0212300;Note=Similar to glycosyltransferase family-37.;Transcript_evidence=ab initio prediction;ORF_evidence=XP_002312258.1 (RefSeq);GO=Biological Process: cell wall biogenesis (GO:0042546),Cellular Component: membrane (GO:0016020),Molecular Function: galactoside 2-alpha-L-fucosyltransferase activity (GO:0008107);InterPro=Xyloglucan fucosyltransferase (IPR004938);TENOR=Os06t0212300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	5720431	5720698	.	-	0	Parent=Os06t0212300-00
Chr06	irgsp1_rep	CDS	5718733	5720240	.	-	2	Parent=Os06t0212300-00
Chr06	irgsp1_rep	mRNA	5724872	5726745	.	+	.	ID=Os06t0212400-00;Name=Os06t0212400-00;Locus_id=Os06g0212400;Note=Similar to glycosyltransferase family-37.;Transcript_evidence=ab initio prediction;ORF_evidence=XP_002312258.1 (RefSeq);GO=Biological Process: cell wall biogenesis (GO:0042546),Cellular Component: membrane (GO:0016020),Molecular Function: galactoside 2-alpha-L-fucosyltransferase activity (GO:0008107);InterPro=Xyloglucan fucosyltransferase (IPR004938);TENOR=Os06t0212400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	5724872	5725133	.	+	0	Parent=Os06t0212400-00
Chr06	irgsp1_rep	CDS	5725232	5726745	.	+	2	Parent=Os06t0212400-00
Chr06	irgsp1_rep	mRNA	5732158	5734054	.	+	.	ID=Os06t0212500-01;Name=Os06t0212500-01;Locus_id=Os06g0212500;Note=Xyloglucan fucosyltransferase domain containing protein.;Transcript_evidence=AK071124 (DDBJ%2C Best hit);ORF_evidence=Q69TV3 (UniProt);GO=Biological Process: cell wall biogenesis (GO:0042546),Cellular Component: membrane (GO:0016020),Molecular Function: galactoside 2-alpha-L-fucosyltransferase activity (GO:0008107);InterPro=Xyloglucan fucosyltransferase (IPR004938);NIAS_FLcDNA=J023080C23;TENOR=Os06t0212500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	5732158	5732159	.	+	.	Parent=Os06t0212500-01
Chr06	irgsp1_rep	CDS	5732160	5732379	.	+	0	Parent=Os06t0212500-01
Chr06	irgsp1_rep	CDS	5732474	5733912	.	+	2	Parent=Os06t0212500-01
Chr06	irgsp1_rep	three_prime_UTR	5733913	5734054	.	+	.	Parent=Os06t0212500-01
Chr06	irgsp1_rep	mRNA	5734479	5736153	.	-	.	ID=Os06t0212600-00;Name=Os06t0212600-00;Locus_id=Os06g0212600;Note=Xyloglucan fucosyltransferase family protein.;Transcript_evidence=tplb0053e16 (Wheat FLcDNA);ORF_evidence=NP_001057125.1 (RefSeq);GO=Biological Process: cell wall biogenesis (GO:0042546),Cellular Component: membrane (GO:0016020),Molecular Function: galactoside 2-alpha-L-fucosyltransferase activity (GO:0008107);InterPro=Xyloglucan fucosyltransferase (IPR004938);TENOR=Os06t0212600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	5734507	5736153	.	-	0	Parent=Os06t0212600-00
Chr06	irgsp1_rep	three_prime_UTR	5734479	5734506	.	-	.	Parent=Os06t0212600-00
Chr06	irgsp1_rep	mRNA	5745188	5747209	.	-	.	ID=Os06t0212900-01;Name=Os06t0212900-01;Locus_id=Os06g0212900;Oryzabase Gene Symbol Synonym(s)=BiP3;Oryzabase Gene Name Synonym(s)=IgG binding protein 3%2C ER stress-related gene BiP3;Note=Heat shock protein Hsp70 family protein.;Transcript_evidence=AK071518 (DDBJ%2C Best hit),AK104048 (DDBJ%2C Best hit);ORF_evidence=B9FS61 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Heat shock protein Hsp70 (IPR001023),Heat shock protein 70 (IPR013126);NIAS_FLcDNA=J023101M15,001-022-H03;Oryzabase=22002;TENOR=Os06t0212900-01
Chr06	irgsp1_rep	five_prime_UTR	5747095	5747209	.	-	.	Parent=Os06t0212900-01
Chr06	irgsp1_rep	CDS	5747037	5747094	.	-	0	Parent=Os06t0212900-01
Chr06	irgsp1_rep	CDS	5746592	5746947	.	-	2	Parent=Os06t0212900-01
Chr06	irgsp1_rep	CDS	5746011	5746468	.	-	0	Parent=Os06t0212900-01
Chr06	irgsp1_rep	CDS	5745383	5745923	.	-	1	Parent=Os06t0212900-01
Chr06	irgsp1_rep	three_prime_UTR	5745188	5745382	.	-	.	Parent=Os06t0212900-01
Chr06	irgsp1_rep	mRNA	5773657	5774238	.	-	.	ID=Os06t0213200-01;Name=Os06t0213200-01;Locus_id=Os06g0213200;Note=Similar to Tic22.;Transcript_evidence=AK058792 (DDBJ%2C Best hit);ORF_evidence=NP_001151773.1 (RefSeq);InterPro=Tic22-like (IPR007378);NIAS_FLcDNA=001-002-G02;Expression=AK058792;TENOR=Os06t0213200-01;KEGG=Os06t0213200-01
Chr06	irgsp1_rep	five_prime_UTR	5774237	5774238	.	-	.	Parent=Os06t0213200-01
Chr06	irgsp1_rep	CDS	5774186	5774236	.	-	0	Parent=Os06t0213200-01
Chr06	irgsp1_rep	CDS	5774071	5774106	.	-	0	Parent=Os06t0213200-01
Chr06	irgsp1_rep	CDS	5773905	5773994	.	-	0	Parent=Os06t0213200-01
Chr06	irgsp1_rep	three_prime_UTR	5773657	5773904	.	-	.	Parent=Os06t0213200-01
Chr06	irgsp1_rep	mRNA	5784199	5788998	.	-	.	ID=Os06t0213400-01;Name=Os06t0213400-01;Locus_id=Os06g0213400;Note=Protein of unknown function DUF829%2C eukaryotic family protein.;Transcript_evidence=AK071478 (DDBJ%2C Best hit);ORF_evidence=A2YAM7 (UniProt);InterPro=Protein of unknown function DUF829%2C TMEM53 (IPR008547);NIAS_FLcDNA=J023092B08;Expression=AK071478;TENOR=Os06t0213400-01;KEGG=Os06t0213400-01
Chr06	irgsp1_rep	five_prime_UTR	5788814	5788998	.	-	.	Parent=Os06t0213400-01
Chr06	irgsp1_rep	CDS	5788623	5788813	.	-	0	Parent=Os06t0213400-01
Chr06	irgsp1_rep	CDS	5787120	5787177	.	-	1	Parent=Os06t0213400-01
Chr06	irgsp1_rep	CDS	5786604	5786684	.	-	0	Parent=Os06t0213400-01
Chr06	irgsp1_rep	CDS	5786461	5786496	.	-	0	Parent=Os06t0213400-01
Chr06	irgsp1_rep	CDS	5785993	5786232	.	-	0	Parent=Os06t0213400-01
Chr06	irgsp1_rep	CDS	5785765	5785903	.	-	0	Parent=Os06t0213400-01
Chr06	irgsp1_rep	CDS	5784512	5784984	.	-	2	Parent=Os06t0213400-01
Chr06	irgsp1_rep	three_prime_UTR	5784199	5784511	.	-	.	Parent=Os06t0213400-01
Chr06	irgsp1_rep	mRNA	5794738	5795810	.	-	.	ID=Os06t0213700-01;Name=Os06t0213700-01;Locus_id=Os06g0213700;RAP-DB Gene Symbol Synonym(s)=KRP2;RAP-DB Gene Name Synonym(s)=Cyclin-dependent kinase inhibitor 2%2C KIP-related protein 2;CGSNL Gene Symbol=KRP2;CGSNL Gene Name=KIP-RELATED PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsKRP2%2C OsiICK2%2C Orysa%3BKRP2%2C OrysaICK2%2C Orysa%3BICK2;Oryzabase Gene Name Synonym(s)=Cyclin-dependent kinase inhibitor 2%2C KIP-related protein 2%2C inhibitor of cyclin-dependent kinase 2;Note=Cyclin-dependent kinase inhibitor 2%2C KIP-related protein%2C Seed development;Transcript_evidence=DQ229363;ORF_evidence=Q283L3;GO=Biological Process: cell cycle arrest (GO:0007050),Molecular Function: cyclin-dependent protein serine/threonine kinase inhibitor activity (GO:0004861),Cellular Component: nucleus (GO:0005634);InterPro=Cyclin-dependent kinase inhibitor (IPR003175);Manual Curation=January 16%2C 2020;Literature_PMID=17012406;Oryzabase=12355;TENOR=Os06t0213700-00;KEGG=Os06t0213700-00
Chr06	irgsp1_rep	CDS	5795457	5795810	.	-	0	Parent=Os06t0213700-01
Chr06	irgsp1_rep	CDS	5795286	5795356	.	-	0	Parent=Os06t0213700-01
Chr06	irgsp1_rep	CDS	5794952	5795191	.	-	1	Parent=Os06t0213700-01
Chr06	irgsp1_rep	CDS	5794738	5794822	.	-	1	Parent=Os06t0213700-01
Chr06	irgsp1_rep	mRNA	5791466	5795810	.	-	.	ID=Os06t0213700-02;Name=Os06t0213700-02;Locus_id=Os06g0213700;RAP-DB Gene Symbol Synonym(s)=KRP2;RAP-DB Gene Name Synonym(s)=Cyclin-dependent kinase inhibitor 2%2C KIP-related protein 2;CGSNL Gene Symbol=KRP2;CGSNL Gene Name=KIP-RELATED PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsKRP2%2C OsiICK2%2C Orysa%3BKRP2%2C OrysaICK2%2C Orysa%3BICK2;Oryzabase Gene Name Synonym(s)=Cyclin-dependent kinase inhibitor 2%2C KIP-related protein 2%2C inhibitor of cyclin-dependent kinase 2;Note=Cyclin-dependent kinase inhibitor 2%2C KIP-related protein%2C Grain filling%2C Seed germination%2C Seed morphogenesis;Transcript_evidence=Inferred from literature;ORF_evidence=A0A0E0PV08 (Oryza rufipogon);GO=Biological Process: cell cycle arrest (GO:0007050),Biological Process: cellulose biosynthetic process (GO:0030244),Molecular Function: cyclin-dependent protein serine/threonine kinase inhibitor activity (GO:0004861),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760),Cellular Component: nucleus (GO:0005634),Cellular Component: membrane (GO:0016020);InterPro=Cyclin-dependent kinase inhibitor (IPR003175),Cellulose synthase (IPR005150);Manual Curation=January 16%2C 2020;Literature_PMID=31905829;Oryzabase=12355
Chr06	irgsp1_rep	CDS	5795457	5795810	.	-	0	Parent=Os06t0213700-02
Chr06	irgsp1_rep	CDS	5795286	5795356	.	-	0	Parent=Os06t0213700-02
Chr06	irgsp1_rep	CDS	5794952	5795191	.	-	1	Parent=Os06t0213700-02
Chr06	irgsp1_rep	CDS	5794753	5794822	.	-	1	Parent=Os06t0213700-02
Chr06	irgsp1_rep	CDS	5794366	5794416	.	-	0	Parent=Os06t0213700-02
Chr06	irgsp1_rep	CDS	5791872	5792059	.	-	0	Parent=Os06t0213700-02
Chr06	irgsp1_rep	CDS	5791466	5791724	.	-	1	Parent=Os06t0213700-02
Chr06	irgsp1_rep	mRNA	5800188	5800849	.	+	.	ID=Os06t0213900-01;Name=Os06t0213900-01;Locus_id=Os06g0213900;Note=Conserved hypothetical protein.;Transcript_evidence=AK106922 (DDBJ%2C Best hit);ORF_evidence=A2YAM9 (UniProt);NIAS_FLcDNA=002-119-B06;Expression=AK106922;TENOR=Os06t0213900-01;KEGG=Os06t0213900-01
Chr06	irgsp1_rep	five_prime_UTR	5800188	5800260	.	+	.	Parent=Os06t0213900-01
Chr06	irgsp1_rep	CDS	5800261	5800608	.	+	0	Parent=Os06t0213900-01
Chr06	irgsp1_rep	three_prime_UTR	5800609	5800849	.	+	.	Parent=Os06t0213900-01
Chr06	irgsp1_rep	mRNA	5807276	5811142	.	+	.	ID=Os06t0214100-01;Name=Os06t0214100-01;Locus_id=Os06g0214100;Note=Conserved hypothetical protein.;Transcript_evidence=AK064799 (DDBJ%2C Best hit);ORF_evidence=B8B3Y9 (UniProt);NIAS_FLcDNA=J013000D05;Expression=AK064799;TENOR=Os06t0214100-01;KEGG=Os06t0214100-01
Chr06	irgsp1_rep	five_prime_UTR	5807276	5807477	.	+	.	Parent=Os06t0214100-01
Chr06	irgsp1_rep	CDS	5807478	5807652	.	+	0	Parent=Os06t0214100-01
Chr06	irgsp1_rep	CDS	5807754	5807848	.	+	2	Parent=Os06t0214100-01
Chr06	irgsp1_rep	CDS	5807947	5808088	.	+	0	Parent=Os06t0214100-01
Chr06	irgsp1_rep	CDS	5809152	5809247	.	+	2	Parent=Os06t0214100-01
Chr06	irgsp1_rep	CDS	5809330	5809449	.	+	2	Parent=Os06t0214100-01
Chr06	irgsp1_rep	CDS	5809584	5809846	.	+	2	Parent=Os06t0214100-01
Chr06	irgsp1_rep	CDS	5810690	5810800	.	+	0	Parent=Os06t0214100-01
Chr06	irgsp1_rep	three_prime_UTR	5810801	5811142	.	+	.	Parent=Os06t0214100-01
Chr06	irgsp1_rep	mRNA	5813497	5814627	.	+	.	ID=Os06t0214300-01;Name=Os06t0214300-01;Locus_id=Os06g0214300;Note=Alpha/beta hydrolase fold-3 domain containing protein.;Transcript_evidence=AK108107 (DDBJ%2C Best hit);ORF_evidence=A2YAN2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Lipase%2C GDXG%2C active site (IPR002168),Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=002-139-B08;Expression=AK108107;TENOR=Os06t0214300-01;KEGG=Os06t0214300-01
Chr06	irgsp1_rep	five_prime_UTR	5813497	5813549	.	+	.	Parent=Os06t0214300-01
Chr06	irgsp1_rep	CDS	5813550	5814518	.	+	0	Parent=Os06t0214300-01
Chr06	irgsp1_rep	three_prime_UTR	5814519	5814627	.	+	.	Parent=Os06t0214300-01
Chr06	irgsp1_rep	mRNA	5835562	5836875	.	+	.	ID=Os06t0214800-01;Name=Os06t0214800-01;Locus_id=Os06g0214800;Oryzabase Gene Symbol Synonym(s)=GID1L2;Oryzabase Gene Name Synonym(s)=GID1L2 family gene%2C gibberellin receptor GID1L2-like gene;Note=Alpha/beta hydrolase fold-3 domain containing protein.;Transcript_evidence=AK070299 (DDBJ%2C Best hit);ORF_evidence=B6TIA5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=J023047F19;Oryzabase=18339;Expression=AK070299;TENOR=Os06t0214800-01;KEGG=Os06t0214800-01
Chr06	irgsp1_rep	five_prime_UTR	5835562	5835683	.	+	.	Parent=Os06t0214800-01
Chr06	irgsp1_rep	CDS	5835684	5836673	.	+	0	Parent=Os06t0214800-01
Chr06	irgsp1_rep	three_prime_UTR	5836674	5836875	.	+	.	Parent=Os06t0214800-01
Chr06	irgsp1_rep	mRNA	5835610	5836879	.	+	.	ID=Os06t0214800-02;Name=Os06t0214800-02;Locus_id=Os06g0214800;Oryzabase Gene Symbol Synonym(s)=GID1L2;Oryzabase Gene Name Synonym(s)=GID1L2 family gene%2C gibberellin receptor GID1L2-like gene;Note=Alpha/beta hydrolase fold-3 domain containing protein.;Transcript_evidence=AK109407 (DDBJ%2C Best hit),AK098967 (DDBJ%2C Best hit),AK109351 (DDBJ%2C Best hit);ORF_evidence=B6TIA5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=006-303-C01,J013084E12,006-204-G08;Oryzabase=18339;TENOR=Os06t0214800-02
Chr06	irgsp1_rep	five_prime_UTR	5835610	5835683	.	+	.	Parent=Os06t0214800-02
Chr06	irgsp1_rep	CDS	5835684	5836673	.	+	0	Parent=Os06t0214800-02
Chr06	irgsp1_rep	three_prime_UTR	5836674	5836879	.	+	.	Parent=Os06t0214800-02
Chr06	irgsp1_rep	mRNA	5837535	5838622	.	-	.	ID=Os06t0214850-00;Name=Os06t0214850-00;Locus_id=Os06g0214850;Oryzabase Gene Symbol Synonym(s)=GID1L2%2C OsGID1L2;Oryzabase Gene Name Synonym(s)=Gibberellin receptor GID1L2;Note=Similar to gibberellin receptor GID1L2.;Transcript_evidence=tplb0013o20 (Wheat FLcDNA);ORF_evidence=NP_001150234.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Alpha/beta hydrolase fold-3 (IPR013094);Oryzabase=23615;TENOR=Os06t0214850-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	5837564	5838622	.	-	0	Parent=Os06t0214850-00
Chr06	irgsp1_rep	three_prime_UTR	5837535	5837563	.	-	.	Parent=Os06t0214850-00
Chr06	irgsp1_rep	mRNA	5840158	5844481	.	-	.	ID=Os06t0214900-01;Name=Os06t0214900-01;Locus_id=Os06g0214900;Note=FAD-dependent pyridine nucleotide-disulphide oxidoreductase domain containing protein.;Transcript_evidence=AK064752 (DDBJ%2C Best hit);ORF_evidence=B6T7Z1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR013027),Pyridine nucleotide-disulphide oxidoreductase%2C FAD/NAD(P)-binding domain (IPR023753);NIAS_FLcDNA=002-120-F09;Expression=AK064752;TENOR=Os06t0214900-01;KEGG=Os06t0214900-01 (EC:1.6.99.3)
Chr06	irgsp1_rep	five_prime_UTR	5844424	5844481	.	-	.	Parent=Os06t0214900-01
Chr06	irgsp1_rep	CDS	5844336	5844423	.	-	0	Parent=Os06t0214900-01
Chr06	irgsp1_rep	CDS	5843738	5843928	.	-	2	Parent=Os06t0214900-01
Chr06	irgsp1_rep	CDS	5843182	5843277	.	-	0	Parent=Os06t0214900-01
Chr06	irgsp1_rep	CDS	5842928	5842994	.	-	0	Parent=Os06t0214900-01
Chr06	irgsp1_rep	CDS	5842640	5842820	.	-	2	Parent=Os06t0214900-01
Chr06	irgsp1_rep	CDS	5842009	5842102	.	-	1	Parent=Os06t0214900-01
Chr06	irgsp1_rep	CDS	5841450	5841665	.	-	0	Parent=Os06t0214900-01
Chr06	irgsp1_rep	CDS	5840923	5841315	.	-	0	Parent=Os06t0214900-01
Chr06	irgsp1_rep	CDS	5840767	5840843	.	-	0	Parent=Os06t0214900-01
Chr06	irgsp1_rep	CDS	5840520	5840623	.	-	1	Parent=Os06t0214900-01
Chr06	irgsp1_rep	CDS	5840299	5840438	.	-	2	Parent=Os06t0214900-01
Chr06	irgsp1_rep	three_prime_UTR	5840158	5840298	.	-	.	Parent=Os06t0214900-01
Chr06	irgsp1_rep	mRNA	5847981	5849574	.	-	.	ID=Os06t0215000-01;Name=Os06t0215000-01;Locus_id=Os06g0215000;Note=Hypothetical protein.;Transcript_evidence=AK070686 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023062N20;TENOR=Os06t0215000-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	5849499	5849574	.	-	.	Parent=Os06t0215000-01
Chr06	irgsp1_rep	CDS	5848638	5849498	.	-	0	Parent=Os06t0215000-01
Chr06	irgsp1_rep	three_prime_UTR	5847981	5848637	.	-	.	Parent=Os06t0215000-01
Chr06	irgsp1_rep	mRNA	5848330	5849957	.	+	.	ID=Os06t0215100-01;Name=Os06t0215100-01;Locus_id=Os06g0215100;Note=Protein of unknown function DUF1645 family protein.;Transcript_evidence=AK242665 (DDBJ%2C Best hit);ORF_evidence=NP_001057134.2 (RefSeq);InterPro=Protein of unknown function DUF1645 (IPR012442);NIAS_FLcDNA=J090029F19;TENOR=Os06t0215100-01;KEGG=Os06t0215100-01
Chr06	irgsp1_rep	five_prime_UTR	5848330	5848359	.	+	.	Parent=Os06t0215100-01
Chr06	irgsp1_rep	CDS	5848360	5849607	.	+	0	Parent=Os06t0215100-01
Chr06	irgsp1_rep	three_prime_UTR	5849608	5849957	.	+	.	Parent=Os06t0215100-01
Chr06	irgsp1_rep	mRNA	5857427	5861125	.	-	.	ID=Os06t0215200-01;Name=Os06t0215200-01;Locus_id=Os06g0215200;Oryzabase Gene Symbol Synonym(s)=OsNABP%2C NABP;Oryzabase Gene Name Synonym(s)=Nucleic Acid Binding Protein;Note=Zinc finger%2C U1-C type domain containing protein.;Transcript_evidence=AK065717 (DDBJ%2C Best hit);ORF_evidence=NP_001151811.1 (RefSeq);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2-type matrin (IPR000690),Zinc finger%2C U1-type (IPR003604),Zinc finger%2C U1-C type (IPR013085);NIAS_FLcDNA=J013038O15;Oryzabase=22544;Expression=AK065717;TENOR=Os06t0215200-01;KEGG=Os06t0215200-01
Chr06	irgsp1_rep	five_prime_UTR	5861002	5861125	.	-	.	Parent=Os06t0215200-01
Chr06	irgsp1_rep	CDS	5860993	5861001	.	-	0	Parent=Os06t0215200-01
Chr06	irgsp1_rep	CDS	5859822	5860022	.	-	0	Parent=Os06t0215200-01
Chr06	irgsp1_rep	CDS	5859496	5859577	.	-	0	Parent=Os06t0215200-01
Chr06	irgsp1_rep	CDS	5858173	5858268	.	-	2	Parent=Os06t0215200-01
Chr06	irgsp1_rep	CDS	5857728	5858071	.	-	2	Parent=Os06t0215200-01
Chr06	irgsp1_rep	three_prime_UTR	5857427	5857727	.	-	.	Parent=Os06t0215200-01
Chr06	irgsp1_rep	mRNA	5857237	5861115	.	-	.	ID=Os06t0215200-02;Name=Os06t0215200-02;Locus_id=Os06g0215200;Oryzabase Gene Symbol Synonym(s)=OsNABP%2C NABP;Oryzabase Gene Name Synonym(s)=Nucleic Acid Binding Protein;Note=Similar to nucleic acid binding protein.;Transcript_evidence=AK072439 (DDBJ%2C Best hit);ORF_evidence=NP_001151811.1 (RefSeq);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2-type matrin (IPR000690),Zinc finger%2C U1-type (IPR003604),Zinc finger%2C U1-C type (IPR013085);NIAS_FLcDNA=J023111C14;Oryzabase=22544;Expression=AK072439;TENOR=Os06t0215200-02;KEGG=Os06t0215200-02
Chr06	irgsp1_rep	five_prime_UTR	5861002	5861115	.	-	.	Parent=Os06t0215200-02
Chr06	irgsp1_rep	CDS	5860993	5861001	.	-	0	Parent=Os06t0215200-02
Chr06	irgsp1_rep	CDS	5859810	5860022	.	-	0	Parent=Os06t0215200-02
Chr06	irgsp1_rep	three_prime_UTR	5858173	5859809	.	-	.	Parent=Os06t0215200-02
Chr06	irgsp1_rep	three_prime_UTR	5857535	5858071	.	-	.	Parent=Os06t0215200-02
Chr06	irgsp1_rep	three_prime_UTR	5857237	5857445	.	-	.	Parent=Os06t0215200-02
Chr06	irgsp1_rep	mRNA	5857430	5857988	.	-	.	ID=Os06t0215200-03;Name=Os06t0215200-03;Locus_id=Os06g0215200;Oryzabase Gene Symbol Synonym(s)=OsNABP%2C NABP;Oryzabase Gene Name Synonym(s)=Nucleic Acid Binding Protein;Note=Similar to nucleic acid binding protein.;Transcript_evidence=AK061707 (DDBJ%2C Best hit);ORF_evidence=NP_001151811.1 (RefSeq);NIAS_FLcDNA=001-037-F06;Oryzabase=22544;Expression=AK061707;TENOR=Os06t0215200-03;KEGG=Os06t0215200-03
Chr06	irgsp1_rep	CDS	5857728	5857988	.	-	0	Parent=Os06t0215200-03
Chr06	irgsp1_rep	three_prime_UTR	5857430	5857727	.	-	.	Parent=Os06t0215200-03
Chr06	irgsp1_rep	mRNA	5862286	5869596	.	-	.	ID=Os06t0215300-01;Name=Os06t0215300-01;Locus_id=Os06g0215300;Oryzabase Gene Symbol Synonym(s)=OsPOP12%2C POP12;Oryzabase Gene Name Synonym(s)=Prolyl Oligopeptidase 12%2C PROLYL OLIGOPEPTIDASE 12;Note=S-adenosylmethionine synthetase domain containing protein.;Transcript_evidence=AK066061 (DDBJ%2C Best hit),AK106301 (DDBJ%2C Best hit);ORF_evidence=NP_001152650.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type peptidase activity (GO:0008236);InterPro=Peptidase S9%2C prolyl oligopeptidase%2C catalytic domain (IPR001375),Six-bladed beta-propeller%2C TolB-like (IPR011042);NIAS_FLcDNA=J013050C22,002-101-C05;Oryzabase=20020;TENOR=Os06t0215300-01
Chr06	irgsp1_rep	five_prime_UTR	5869494	5869596	.	-	.	Parent=Os06t0215300-01
Chr06	irgsp1_rep	CDS	5869276	5869493	.	-	0	Parent=Os06t0215300-01
Chr06	irgsp1_rep	CDS	5868305	5868474	.	-	1	Parent=Os06t0215300-01
Chr06	irgsp1_rep	CDS	5867769	5867873	.	-	2	Parent=Os06t0215300-01
Chr06	irgsp1_rep	CDS	5867623	5867694	.	-	2	Parent=Os06t0215300-01
Chr06	irgsp1_rep	CDS	5867354	5867501	.	-	2	Parent=Os06t0215300-01
Chr06	irgsp1_rep	CDS	5866850	5866932	.	-	1	Parent=Os06t0215300-01
Chr06	irgsp1_rep	CDS	5866095	5866150	.	-	2	Parent=Os06t0215300-01
Chr06	irgsp1_rep	CDS	5865757	5865884	.	-	0	Parent=Os06t0215300-01
Chr06	irgsp1_rep	CDS	5865590	5865680	.	-	1	Parent=Os06t0215300-01
Chr06	irgsp1_rep	CDS	5865400	5865465	.	-	0	Parent=Os06t0215300-01
Chr06	irgsp1_rep	CDS	5865057	5865279	.	-	0	Parent=Os06t0215300-01
Chr06	irgsp1_rep	CDS	5864730	5864831	.	-	2	Parent=Os06t0215300-01
Chr06	irgsp1_rep	CDS	5864470	5864555	.	-	2	Parent=Os06t0215300-01
Chr06	irgsp1_rep	CDS	5864263	5864385	.	-	0	Parent=Os06t0215300-01
Chr06	irgsp1_rep	CDS	5863708	5863777	.	-	0	Parent=Os06t0215300-01
Chr06	irgsp1_rep	CDS	5863516	5863607	.	-	2	Parent=Os06t0215300-01
Chr06	irgsp1_rep	CDS	5862641	5862745	.	-	0	Parent=Os06t0215300-01
Chr06	irgsp1_rep	CDS	5862427	5862540	.	-	0	Parent=Os06t0215300-01
Chr06	irgsp1_rep	three_prime_UTR	5862286	5862426	.	-	.	Parent=Os06t0215300-01
Chr06	irgsp1_rep	mRNA	5870107	5876409	.	-	.	ID=Os06t0215400-01;Name=Os06t0215400-01;Locus_id=Os06g0215400;Oryzabase Gene Symbol Synonym(s)=OsPOP13%2C POP13;Oryzabase Gene Name Synonym(s)=Prolyl Oligopeptidase 13%2C PROLYL OLIGOPEPTIDASE 13;Note=Peptidase S9%2C prolyl oligopeptidase active site region domain containing protein.;Transcript_evidence=AK101083 (DDBJ%2C Best hit);ORF_evidence=NP_001152650.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type peptidase activity (GO:0008236);InterPro=Peptidase S9%2C prolyl oligopeptidase%2C catalytic domain (IPR001375),Six-bladed beta-propeller%2C TolB-like (IPR011042);NIAS_FLcDNA=J033024G11;Oryzabase=20021;Expression=AK101083;TENOR=Os06t0215400-01;KEGG=Os06t0215400-01
Chr06	irgsp1_rep	five_prime_UTR	5876268	5876409	.	-	.	Parent=Os06t0215400-01
Chr06	irgsp1_rep	CDS	5876095	5876267	.	-	0	Parent=Os06t0215400-01
Chr06	irgsp1_rep	CDS	5875828	5876009	.	-	1	Parent=Os06t0215400-01
Chr06	irgsp1_rep	CDS	5874965	5875069	.	-	2	Parent=Os06t0215400-01
Chr06	irgsp1_rep	CDS	5874806	5874877	.	-	2	Parent=Os06t0215400-01
Chr06	irgsp1_rep	CDS	5874584	5874731	.	-	2	Parent=Os06t0215400-01
Chr06	irgsp1_rep	CDS	5874128	5874210	.	-	1	Parent=Os06t0215400-01
Chr06	irgsp1_rep	CDS	5873864	5873919	.	-	2	Parent=Os06t0215400-01
Chr06	irgsp1_rep	CDS	5873241	5873377	.	-	0	Parent=Os06t0215400-01
Chr06	irgsp1_rep	CDS	5873079	5873169	.	-	1	Parent=Os06t0215400-01
Chr06	irgsp1_rep	CDS	5872876	5872941	.	-	0	Parent=Os06t0215400-01
Chr06	irgsp1_rep	CDS	5872558	5872780	.	-	0	Parent=Os06t0215400-01
Chr06	irgsp1_rep	CDS	5872099	5872200	.	-	2	Parent=Os06t0215400-01
Chr06	irgsp1_rep	CDS	5871822	5871907	.	-	2	Parent=Os06t0215400-01
Chr06	irgsp1_rep	CDS	5871615	5871737	.	-	0	Parent=Os06t0215400-01
Chr06	irgsp1_rep	CDS	5871450	5871519	.	-	0	Parent=Os06t0215400-01
Chr06	irgsp1_rep	CDS	5871261	5871352	.	-	2	Parent=Os06t0215400-01
Chr06	irgsp1_rep	CDS	5870706	5870810	.	-	0	Parent=Os06t0215400-01
Chr06	irgsp1_rep	CDS	5870361	5870486	.	-	0	Parent=Os06t0215400-01
Chr06	irgsp1_rep	three_prime_UTR	5870107	5870360	.	-	.	Parent=Os06t0215400-01
Chr06	irgsp1_rep	mRNA	5878574	5880549	.	-	.	ID=Os06t0215500-01;Name=Os06t0215500-01;Locus_id=Os06g0215500;CGSNL Gene Symbol=OPR6;CGSNL Gene Name=12-OXOPHYTODIENOATE REDUCTASE 6;Oryzabase Gene Symbol Synonym(s)=OsOPR6%2C OsOPR4%2C OsOPR06-1;Oryzabase Gene Name Synonym(s)=12-oxo-phytodienoic acid reductase 6;Note=Similar to Oxo-phytodienoic acid reductase.;Transcript_evidence=AK108079 (DDBJ%2C Best hit);ORF_evidence=A8DA33 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=NADH:flavin oxidoreductase/NADH oxidase%2C N-terminal (IPR001155),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=002-138-E09;Oryzabase=8760;Expression=AK108079;TENOR=Os06t0215500-01;KEGG=Os06t0215500-01 (EC:1.6.99.1)
Chr06	irgsp1_rep	five_prime_UTR	5880414	5880549	.	-	.	Parent=Os06t0215500-01
Chr06	irgsp1_rep	CDS	5880032	5880413	.	-	0	Parent=Os06t0215500-01
Chr06	irgsp1_rep	CDS	5878779	5879572	.	-	2	Parent=Os06t0215500-01
Chr06	irgsp1_rep	three_prime_UTR	5878574	5878778	.	-	.	Parent=Os06t0215500-01
Chr06	irgsp1_rep	mRNA	5878825	5880319	.	+	.	ID=Os06t0215533-00;Name=Os06t0215533-00;Locus_id=Os06g0215533;Note=Hypothetical gene.;Transcript_evidence=EU947281 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0215533-00
Chr06	irgsp1_rep	five_prime_UTR	5878825	5878826	.	+	.	Parent=Os06t0215533-00
Chr06	irgsp1_rep	CDS	5878827	5879543	.	+	0	Parent=Os06t0215533-00
Chr06	irgsp1_rep	three_prime_UTR	5879544	5879569	.	+	.	Parent=Os06t0215533-00
Chr06	irgsp1_rep	three_prime_UTR	5880028	5880319	.	+	.	Parent=Os06t0215533-00
Chr06	irgsp1_rep	mRNA	5884568	5886141	.	-	.	ID=Os06t0215600-02;Name=Os06t0215600-02;Locus_id=Os06g0215600;CGSNL Gene Symbol=OPR5;CGSNL Gene Name=12-OXOPHYTODIENOATE REDUCTASE 5;Oryzabase Gene Symbol Synonym(s)=OsOPR5%2C OsOPR6%2C OsOPR06-2%2C OPR4;Oryzabase Gene Name Synonym(s)=12-oxo-phytodienoic acid reductase 5;Note=Similar to Oxo-phytodienoic acid reductase.;Transcript_evidence=AK061212 (DDBJ%2C Best hit),AK104039 (DDBJ%2C Best hit),AK104193 (DDBJ%2C Best hit),AK104256 (DDBJ%2C Best hit);ORF_evidence=A8DA33 (UniProt);NIAS_FLcDNA=006-210-D07,001-021-G06,006-303-D11,006-309-E01;Oryzabase=8759;TENOR=Os06t0215600-02
Chr06	irgsp1_rep	five_prime_UTR	5886048	5886141	.	-	.	Parent=Os06t0215600-02
Chr06	irgsp1_rep	CDS	5885702	5886047	.	-	0	Parent=Os06t0215600-02
Chr06	irgsp1_rep	CDS	5884783	5885561	.	-	2	Parent=Os06t0215600-02
Chr06	irgsp1_rep	three_prime_UTR	5884568	5884782	.	-	.	Parent=Os06t0215600-02
Chr06	irgsp1_rep	mRNA	5884818	5886026	.	+	.	ID=Os06t0215750-00;Name=Os06t0215750-00;Locus_id=Os06g0215750;Note=Hypothetical gene.;Transcript_evidence=EU947281 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0215750-00;KEGG=Os06t0215750-00
Chr06	irgsp1_rep	five_prime_UTR	5884818	5884818	.	+	.	Parent=Os06t0215750-00
Chr06	irgsp1_rep	CDS	5884819	5885499	.	+	0	Parent=Os06t0215750-00
Chr06	irgsp1_rep	three_prime_UTR	5885500	5885556	.	+	.	Parent=Os06t0215750-00
Chr06	irgsp1_rep	three_prime_UTR	5885695	5886026	.	+	.	Parent=Os06t0215750-00
Chr06	irgsp1_rep	mRNA	5894911	5896347	.	-	.	ID=Os06t0215900-01;Name=Os06t0215900-01;Locus_id=Os06g0215900;CGSNL Gene Symbol=OPR4;CGSNL Gene Name=12-OXOPHYTODIENOATE REDUCTASE 4;Oryzabase Gene Symbol Synonym(s)=OsOPR4%2C OsOPR10%2C OsOPR06-3;Oryzabase Gene Name Synonym(s)=12-oxo-phytodienoic acid reductase 4;Note=Similar to Oxo-phytodienoic acid reductase.;Transcript_evidence=AK072596 (DDBJ%2C Best hit);ORF_evidence=Q8H9F1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=NADH:flavin oxidoreductase/NADH oxidase%2C N-terminal (IPR001155),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J023125E21;Oryzabase=8758;Expression=AK072596;TENOR=Os06t0215900-01;KEGG=Os06t0215900-01 (EC:1.6.99.1)
Chr06	irgsp1_rep	five_prime_UTR	5896269	5896347	.	-	.	Parent=Os06t0215900-01
Chr06	irgsp1_rep	CDS	5896130	5896268	.	-	0	Parent=Os06t0215900-01
Chr06	irgsp1_rep	CDS	5895905	5896111	.	-	2	Parent=Os06t0215900-01
Chr06	irgsp1_rep	CDS	5895000	5895778	.	-	2	Parent=Os06t0215900-01
Chr06	irgsp1_rep	three_prime_UTR	5894911	5894999	.	-	.	Parent=Os06t0215900-01
Chr06	irgsp1_rep	mRNA	5894911	5896347	.	-	.	ID=Os06t0215900-02;Name=Os06t0215900-02;Locus_id=Os06g0215900;CGSNL Gene Symbol=OPR4;CGSNL Gene Name=12-OXOPHYTODIENOATE REDUCTASE 4;Oryzabase Gene Symbol Synonym(s)=OsOPR4%2C OsOPR10%2C OsOPR06-3;Oryzabase Gene Name Synonym(s)=12-oxo-phytodienoic acid reductase 4;Note=Similar to 12-oxophytodienoic acid reductase.;Transcript_evidence=AK105590 (DDBJ%2C Best hit);ORF_evidence=Q8H9F1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=NADH:flavin oxidoreductase/NADH oxidase%2C N-terminal (IPR001155),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=001-129-A06;Oryzabase=8758;Expression=AK105590;TENOR=Os06t0215900-02;KEGG=Os06t0215900-02 (EC:1.6.99.1)
Chr06	irgsp1_rep	five_prime_UTR	5896269	5896347	.	-	.	Parent=Os06t0215900-02
Chr06	irgsp1_rep	CDS	5895905	5896268	.	-	0	Parent=Os06t0215900-02
Chr06	irgsp1_rep	CDS	5895000	5895778	.	-	2	Parent=Os06t0215900-02
Chr06	irgsp1_rep	three_prime_UTR	5894911	5894999	.	-	.	Parent=Os06t0215900-02
Chr06	irgsp1_rep	mRNA	5895037	5896223	.	+	.	ID=Os06t0215925-00;Name=Os06t0215925-00;Locus_id=Os06g0215925;Note=Non-protein coding transcript.;Transcript_evidence=EU947281 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0215925-00
Chr06	irgsp1_rep	exon	5895037	5895773	.	+	.	Parent=Os06t0215925-00
Chr06	irgsp1_rep	exon	5895898	5896223	.	+	.	Parent=Os06t0215925-00
Chr06	irgsp1_rep	mRNA	5899603	5905836	.	+	.	ID=Os06t0215950-00;Name=Os06t0215950-00;Locus_id=Os06g0215950;Note=Non-protein coding transcript.;Transcript_evidence=EU947281 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0215950-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	exon	5899603	5900338	.	+	.	Parent=Os06t0215950-00
Chr06	irgsp1_rep	exon	5905511	5905836	.	+	.	Parent=Os06t0215950-00
Chr06	irgsp1_rep	mRNA	5905286	5906018	.	-	.	ID=Os06t0216000-01;Name=Os06t0216000-01;Locus_id=Os06g0216000;CGSNL Gene Symbol=OPR3;CGSNL Gene Name=12-OXOPHYTODIENOATE REDUCTASE 3;Oryzabase Gene Symbol Synonym(s)=OsOPR3%2C OsOPR06-4;Oryzabase Gene Name Synonym(s)=12-oxo-phytodienoic acid reductase 3;Note=Similar to 12-oxo-phytodienoic acid reductase.;Transcript_evidence=AK287507 (DDBJ%2C Best hit);ORF_evidence=A3QQM8 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=NADH:flavin oxidoreductase/NADH oxidase%2C N-terminal (IPR001155),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J043037D14;Oryzabase=8757;TENOR=Os06t0216000-01;KEGG=Os06t0216000-01 (EC:1.6.99.1)
Chr06	irgsp1_rep	five_prime_UTR	5905885	5906018	.	-	.	Parent=Os06t0216000-01
Chr06	irgsp1_rep	CDS	5905504	5905884	.	-	0	Parent=Os06t0216000-01
Chr06	irgsp1_rep	three_prime_UTR	5905286	5905503	.	-	.	Parent=Os06t0216000-01
Chr06	irgsp1_rep	mRNA	5908095	5909128	.	-	.	ID=Os06t0216100-00;Name=Os06t0216100-00;Locus_id=Os06g0216100;Note=Similar to UDP-glucoronosyl and UDP-glucosyl transferase family protein%2C expressed.;Transcript_evidence=AK360870 (DDBJ);ORF_evidence=Q2QNK9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os06t0216100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	5908980	5909128	.	-	.	Parent=Os06t0216100-00
Chr06	irgsp1_rep	CDS	5908095	5908979	.	-	0	Parent=Os06t0216100-00
Chr06	irgsp1_rep	mRNA	5913057	5914285	.	-	.	ID=Os06t0216200-00;Name=Os06t0216200-00;Locus_id=Os06g0216200;CGSNL Gene Symbol=OPR2;CGSNL Gene Name=12-OXOPHYTODIENOATE REDUCTASE 2;Oryzabase Gene Symbol Synonym(s)=OsOPR2%2C OsOPR06-5;Oryzabase Gene Name Synonym(s)=12-oxo-phytodienoic acid reductase 2;Note=Similar to Oxo-phytodienoic acid reductase.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8H9F1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=NADH:flavin oxidoreductase/NADH oxidase%2C N-terminal (IPR001155),Aldolase-type TIM barrel (IPR013785);Oryzabase=8756;TENOR=Os06t0216200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	5913937	5914285	.	-	0	Parent=Os06t0216200-00
Chr06	irgsp1_rep	CDS	5913057	5913838	.	-	2	Parent=Os06t0216200-00
Chr06	irgsp1_rep	mRNA	5913097	5914255	.	+	.	ID=Os06t0216250-00;Name=Os06t0216250-00;Locus_id=Os06g0216250;Note=Non-protein coding transcript.;Transcript_evidence=EU947281 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0216250-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	exon	5913097	5913820	.	+	.	Parent=Os06t0216250-00
Chr06	irgsp1_rep	exon	5913924	5914255	.	+	.	Parent=Os06t0216250-00
Chr06	irgsp1_rep	mRNA	5918167	5919685	.	-	.	ID=Os06t0216300-01;Name=Os06t0216300-01;Locus_id=Os06g0216300;CGSNL Gene Symbol=OPR1;CGSNL Gene Name=12-OXOPHYTODIENOATE REDUCTASE 1;Oryzabase Gene Symbol Synonym(s)=OsOPR1%2C OsOPR2%2C OsOPR11%2C OsOPR06-6%2C OPDAR1%2C OsOPR%2C OPDAR;Oryzabase Gene Name Synonym(s)=12-oxo-phytodienoic acid reductase 1%2C OPDA reductase;Note=Similar to 12-oxophytodienoic acid reductase.;Transcript_evidence=AK103067 (DDBJ%2C Best hit);ORF_evidence=Q8H9F1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=NADH:flavin oxidoreductase/NADH oxidase%2C N-terminal (IPR001155),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J033117P12;Oryzabase=8755;Expression=AK103067;TENOR=Os06t0216300-01;KEGG=Os06t0216300-01 (EC:1.6.99.1)
Chr06	irgsp1_rep	five_prime_UTR	5919582	5919685	.	-	.	Parent=Os06t0216300-01
Chr06	irgsp1_rep	CDS	5919123	5919581	.	-	0	Parent=Os06t0216300-01
Chr06	irgsp1_rep	three_prime_UTR	5918167	5919122	.	-	.	Parent=Os06t0216300-01
Chr06	irgsp1_rep	mRNA	5918360	5919539	.	+	.	ID=Os06t0216350-00;Name=Os06t0216350-00;Locus_id=Os06g0216350;Note=Hypothetical protein.;Transcript_evidence=EU947281 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0216350-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	5918360	5919031	.	+	.	Parent=Os06t0216350-00
Chr06	irgsp1_rep	CDS	5919032	5919083	.	+	0	Parent=Os06t0216350-00
Chr06	irgsp1_rep	CDS	5919196	5919539	.	+	2	Parent=Os06t0216350-00
Chr06	irgsp1_rep	mRNA	5921695	5923664	.	-	.	ID=Os06t0216400-01;Name=Os06t0216400-01;Locus_id=Os06g0216400;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK101267 (DDBJ%2C Best hit);ORF_evidence=B8B3Z8 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033032L21;Expression=AK101267;TENOR=Os06t0216400-01;KEGG=Os06t0216400-01
Chr06	irgsp1_rep	five_prime_UTR	5923402	5923664	.	-	.	Parent=Os06t0216400-01
Chr06	irgsp1_rep	CDS	5921977	5923401	.	-	0	Parent=Os06t0216400-01
Chr06	irgsp1_rep	three_prime_UTR	5921695	5921976	.	-	.	Parent=Os06t0216400-01
Chr06	irgsp1_rep	mRNA	5930467	5931984	.	-	.	ID=Os06t0216700-01;Name=Os06t0216700-01;Locus_id=Os06g0216700;Oryzabase Gene Symbol Synonym(s)=OsSCL3;Oryzabase Gene Name Synonym(s)=stellacyanin-like protein 3;Note=Cupredoxin domain containing protein.;Transcript_evidence=AK058410 (DDBJ%2C Best hit),AK101397 (DDBJ%2C Best hit);ORF_evidence=B6TG98 (UniProt);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);NIAS_FLcDNA=001-015-C08,J033037B14;Oryzabase=9787;Expression=AK058410;TENOR=Os06t0216700-01;KEGG=Os06t0216700-01
Chr06	irgsp1_rep	five_prime_UTR	5931863	5931984	.	-	.	Parent=Os06t0216700-01
Chr06	irgsp1_rep	CDS	5931679	5931862	.	-	0	Parent=Os06t0216700-01
Chr06	irgsp1_rep	CDS	5930747	5931012	.	-	2	Parent=Os06t0216700-01
Chr06	irgsp1_rep	three_prime_UTR	5930467	5930746	.	-	.	Parent=Os06t0216700-01
Chr06	irgsp1_rep	mRNA	5933850	5939505	.	-	.	ID=Os06t0216800-01;Name=Os06t0216800-01;Locus_id=Os06g0216800;CGSNL Gene Symbol=CYP40A;CGSNL Gene Name=CYCLOPHILIN 40A;Oryzabase Gene Symbol Synonym(s)=OsCYP40a%2C OsCYP-13%2C OsCYP40-1a%2C OsCYP40-1b;Oryzabase Gene Name Synonym(s)=cyclophilin 40a%2C cyclophilin 13;Note=Similar to Cyclophilin-40 (Expressed protein).;Transcript_evidence=AK068112 (DDBJ%2C Best hit);ORF_evidence=NP_565381.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide TPR-1 (IPR001440),Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type (IPR002130),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Cyclophilin-like (IPR015891),Tetratricopeptide repeat (IPR019734),Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type%2C conserved site (IPR020892),Elongated TPR repeat-containing domain (IPR023114);NIAS_FLcDNA=J013134M21;Oryzabase=10070;Expression=AK068112;TENOR=Os06t0216800-01;KEGG=Os06t0216800-01 (EC:5.2.1.8)
Chr06	irgsp1_rep	five_prime_UTR	5939358	5939505	.	-	.	Parent=Os06t0216800-01
Chr06	irgsp1_rep	CDS	5939121	5939357	.	-	0	Parent=Os06t0216800-01
Chr06	irgsp1_rep	CDS	5936669	5937169	.	-	0	Parent=Os06t0216800-01
Chr06	irgsp1_rep	CDS	5936199	5936286	.	-	0	Parent=Os06t0216800-01
Chr06	irgsp1_rep	CDS	5936052	5936104	.	-	2	Parent=Os06t0216800-01
Chr06	irgsp1_rep	CDS	5935297	5935401	.	-	0	Parent=Os06t0216800-01
Chr06	irgsp1_rep	CDS	5934621	5934696	.	-	0	Parent=Os06t0216800-01
Chr06	irgsp1_rep	CDS	5934502	5934539	.	-	2	Parent=Os06t0216800-01
Chr06	irgsp1_rep	CDS	5934346	5934426	.	-	0	Parent=Os06t0216800-01
Chr06	irgsp1_rep	CDS	5934226	5934237	.	-	0	Parent=Os06t0216800-01
Chr06	irgsp1_rep	three_prime_UTR	5934156	5934225	.	-	.	Parent=Os06t0216800-01
Chr06	irgsp1_rep	three_prime_UTR	5933850	5934071	.	-	.	Parent=Os06t0216800-01
Chr06	irgsp1_rep	mRNA	5939282	5943507	.	+	.	ID=Os06t0216966-01;Name=Os06t0216966-01;Locus_id=Os06g0216966;Note=Hypothetical gene.;Transcript_evidence=AK288790 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090069P15;TENOR=Os06t0216966-01;KEGG=Os06t0216966-01
Chr06	irgsp1_rep	five_prime_UTR	5939282	5942551	.	+	.	Parent=Os06t0216966-01
Chr06	irgsp1_rep	CDS	5942552	5942935	.	+	0	Parent=Os06t0216966-01
Chr06	irgsp1_rep	three_prime_UTR	5942936	5943507	.	+	.	Parent=Os06t0216966-01
Chr06	irgsp1_rep	mRNA	5952599	5963309	.	-	.	ID=Os06t0217300-01;Name=Os06t0217300-01;Locus_id=Os06g0217300;CGSNL Gene Symbol=MADS55;CGSNL Gene Name=MADS BOX GENE 55;Oryzabase Gene Symbol Synonym(s)=OsMADS55%2C DLN163%2C OsDLN163;Oryzabase Gene Name Synonym(s)=MADS box gene55%2C MADS-box transcription factor 55%2C DLN repressor 163%2C DLN motif protein 163;Note=Similar to Transcription factor MADS55.;Transcript_evidence=AK111859 (DDBJ%2C Best hit);ORF_evidence=Q69TG5-2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box (IPR002100),Transcription factor%2C K-box (IPR002487);NIAS_FLcDNA=J033024G19;Oryzabase=3104;Expression=AK111859;TENOR=Os06t0217300-01;KEGG=Os06t0217300-01
Chr06	irgsp1_rep	five_prime_UTR	5963185	5963309	.	-	.	Parent=Os06t0217300-01
Chr06	irgsp1_rep	CDS	5963003	5963184	.	-	0	Parent=Os06t0217300-01
Chr06	irgsp1_rep	CDS	5959732	5959813	.	-	1	Parent=Os06t0217300-01
Chr06	irgsp1_rep	CDS	5958299	5958360	.	-	0	Parent=Os06t0217300-01
Chr06	irgsp1_rep	CDS	5958086	5958185	.	-	1	Parent=Os06t0217300-01
Chr06	irgsp1_rep	CDS	5957945	5957986	.	-	0	Parent=Os06t0217300-01
Chr06	irgsp1_rep	CDS	5953892	5953933	.	-	0	Parent=Os06t0217300-01
Chr06	irgsp1_rep	CDS	5953597	5953748	.	-	0	Parent=Os06t0217300-01
Chr06	irgsp1_rep	CDS	5953019	5953028	.	-	1	Parent=Os06t0217300-01
Chr06	irgsp1_rep	three_prime_UTR	5952599	5953018	.	-	.	Parent=Os06t0217300-01
Chr06	irgsp1_rep	mRNA	5977401	5980737	.	-	.	ID=Os06t0217500-01;Name=Os06t0217500-01;Locus_id=Os06g0217500;Oryzabase Gene Symbol Synonym(s)=OsMED6%2C MED6%2C OsMed6_1%2C Med6_1;Oryzabase Gene Name Synonym(s)=Mediator complex protein OsMED6%2C Mediator 6_1;Note=MED6 mediator family protein.;Transcript_evidence=AK102305 (DDBJ%2C Best hit);ORF_evidence=NP_188772.2 (RefSeq);GO=Biological Process: regulation of transcription from RNA polymerase II promoter (GO:0006357),Cellular Component: mediator complex (GO:0016592),Molecular Function: RNA polymerase II transcription cofactor activity (GO:0001104);InterPro=Mediator complex%2C subunit Med6 (IPR007018),Mediator complex%2C subunit Med6%2C metazoa/plant (IPR016820);NIAS_FLcDNA=J033089P03;Oryzabase=18694;Expression=AK102305;TENOR=Os06t0217500-01;KEGG=Os06t0217500-01
Chr06	irgsp1_rep	five_prime_UTR	5980609	5980737	.	-	.	Parent=Os06t0217500-01
Chr06	irgsp1_rep	CDS	5980578	5980608	.	-	0	Parent=Os06t0217500-01
Chr06	irgsp1_rep	CDS	5980343	5980529	.	-	2	Parent=Os06t0217500-01
Chr06	irgsp1_rep	CDS	5980039	5980213	.	-	1	Parent=Os06t0217500-01
Chr06	irgsp1_rep	CDS	5979837	5979906	.	-	0	Parent=Os06t0217500-01
Chr06	irgsp1_rep	CDS	5978025	5978134	.	-	2	Parent=Os06t0217500-01
Chr06	irgsp1_rep	CDS	5977608	5977763	.	-	0	Parent=Os06t0217500-01
Chr06	irgsp1_rep	three_prime_UTR	5977401	5977607	.	-	.	Parent=Os06t0217500-01
Chr06	irgsp1_rep	mRNA	5982681	5984396	.	-	.	ID=Os06t0217600-01;Name=Os06t0217600-01;Locus_id=Os06g0217600;Note=Similar to kinesin motor protein-related.;Transcript_evidence=AK071349 (DDBJ%2C Best hit);ORF_evidence=NP_201349.2 (RefSeq);NIAS_FLcDNA=J023093G22;TENOR=Os06t0217600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	5984395	5984396	.	-	.	Parent=Os06t0217600-01
Chr06	irgsp1_rep	CDS	5984254	5984394	.	-	0	Parent=Os06t0217600-01
Chr06	irgsp1_rep	CDS	5983994	5984152	.	-	0	Parent=Os06t0217600-01
Chr06	irgsp1_rep	CDS	5982909	5983343	.	-	0	Parent=Os06t0217600-01
Chr06	irgsp1_rep	three_prime_UTR	5982681	5982908	.	-	.	Parent=Os06t0217600-01
Chr06	irgsp1_rep	mRNA	6007466	6010097	.	-	.	ID=Os06t0217700-01;Name=Os06t0217700-01;Locus_id=Os06g0217700;Note=Conserved hypothetical protein.;Transcript_evidence=AK062617 (DDBJ%2C Best hit);ORF_evidence=A2YAQ5 (UniProt);NIAS_FLcDNA=001-105-B04;Expression=AK062617;TENOR=Os06t0217700-01;KEGG=Os06t0217700-01
Chr06	irgsp1_rep	five_prime_UTR	6009977	6010097	.	-	.	Parent=Os06t0217700-01
Chr06	irgsp1_rep	CDS	6009838	6009976	.	-	0	Parent=Os06t0217700-01
Chr06	irgsp1_rep	CDS	6009446	6009729	.	-	2	Parent=Os06t0217700-01
Chr06	irgsp1_rep	CDS	6007975	6008079	.	-	0	Parent=Os06t0217700-01
Chr06	irgsp1_rep	CDS	6007815	6007886	.	-	0	Parent=Os06t0217700-01
Chr06	irgsp1_rep	CDS	6007637	6007708	.	-	0	Parent=Os06t0217700-01
Chr06	irgsp1_rep	three_prime_UTR	6007466	6007636	.	-	.	Parent=Os06t0217700-01
Chr06	irgsp1_rep	mRNA	6019597	6021841	.	+	.	ID=Os06t0217900-01;Name=Os06t0217900-01;Locus_id=Os06g0217900;CGSNL Gene Symbol=CYCD2%3B2;CGSNL Gene Name=CYCLIN-D2-2;Oryzabase Gene Symbol Synonym(s)=CycD2%3B2%2C CycD2%3Bos%3B2%2C Orysa%3BCycD2%3B2%2C Orysa%3BCYCD2%3B2%2C CyclinD3%3B1%2C OsCYCD2%3B1;Oryzabase Gene Name Synonym(s)=D-type cyclin 2%3B2%2C Cyclin D3%3B1;Note=Similar to Cyclin-D3-1.;Transcript_evidence=AK103765 (DDBJ%2C Best hit);ORF_evidence=Q69QB8 (UniProt);InterPro=Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763);NIAS_FLcDNA=J033143H11;Oryzabase=13265;TENOR=Os06t0217900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	6019597	6019924	.	+	.	Parent=Os06t0217900-01
Chr06	irgsp1_rep	CDS	6019925	6020221	.	+	0	Parent=Os06t0217900-01
Chr06	irgsp1_rep	CDS	6020411	6020626	.	+	0	Parent=Os06t0217900-01
Chr06	irgsp1_rep	three_prime_UTR	6020627	6020706	.	+	.	Parent=Os06t0217900-01
Chr06	irgsp1_rep	three_prime_UTR	6020803	6021004	.	+	.	Parent=Os06t0217900-01
Chr06	irgsp1_rep	three_prime_UTR	6021109	6021230	.	+	.	Parent=Os06t0217900-01
Chr06	irgsp1_rep	three_prime_UTR	6021409	6021841	.	+	.	Parent=Os06t0217900-01
Chr06	irgsp1_rep	mRNA	6020054	6020918	.	-	.	ID=Os06t0217925-00;Name=Os06t0217925-00;Locus_id=Os06g0217925;Note=Hypothetical protein.;Transcript_evidence=BT086899 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0217925-00
Chr06	irgsp1_rep	five_prime_UTR	6020841	6020918	.	-	.	Parent=Os06t0217925-00
Chr06	irgsp1_rep	CDS	6020807	6020840	.	-	0	Parent=Os06t0217925-00
Chr06	irgsp1_rep	CDS	6020628	6020709	.	-	2	Parent=Os06t0217925-00
Chr06	irgsp1_rep	CDS	6020415	6020511	.	-	1	Parent=Os06t0217925-00
Chr06	irgsp1_rep	CDS	6020140	6020226	.	-	0	Parent=Os06t0217925-00
Chr06	irgsp1_rep	three_prime_UTR	6020054	6020139	.	-	.	Parent=Os06t0217925-00
Chr06	irgsp1_rep	mRNA	6027823	6029449	.	+	.	ID=Os06t0218000-01;Name=Os06t0218000-01;Locus_id=Os06g0218000;RAP-DB Gene Symbol Synonym(s)=OsSKIPb;CGSNL Gene Symbol=SKIPB;CGSNL Gene Name=SKI INTERACTING PROTEIN B;Oryzabase Gene Symbol Synonym(s)=OsSKIPb;Note=Rice homolog of human Ski-interacting protein (SKIP)%2C Most likely nonfunctional or a pseudogene;Transcript_evidence=tplb0006k10 (Wheat FLcDNA);ORF_evidence=Q69QB5;GO=Biological Process: mRNA splicing%2C via spliceosome (GO:0000398),Cellular Component: spliceosomal complex (GO:0005681);InterPro=SKI-interacting protein SKIP%2C SNW domain (IPR004015);Manual Curation=May 14%2C 2020;Literature_PMID=19339499;Oryzabase=9923;TENOR=Os06t0218000-00;KEGG=Os06t0218000-00
Chr06	irgsp1_rep	CDS	6027823	6029445	.	+	0	Parent=Os06t0218000-01
Chr06	irgsp1_rep	three_prime_UTR	6029446	6029449	.	+	.	Parent=Os06t0218000-01
Chr06	irgsp1_rep	mRNA	6034233	6035344	.	+	.	ID=Os06t0218100-01;Name=Os06t0218100-01;Locus_id=Os06g0218100;Note=Similar to FIP1.;Transcript_evidence=AK058667 (DDBJ%2C Best hit);ORF_evidence=B6TRZ9 (UniProt);NIAS_FLcDNA=001-018-G11;Expression=AK058667;TENOR=Os06t0218100-01;KEGG=Os06t0218100-01
Chr06	irgsp1_rep	five_prime_UTR	6034233	6034848	.	+	.	Parent=Os06t0218100-01
Chr06	irgsp1_rep	CDS	6034849	6035058	.	+	0	Parent=Os06t0218100-01
Chr06	irgsp1_rep	three_prime_UTR	6035059	6035344	.	+	.	Parent=Os06t0218100-01
Chr06	irgsp1_rep	mRNA	6036739	6046262	.	-	.	ID=Os06t0218150-00;Name=Os06t0218150-00;Locus_id=Os06g0218150;Note=Conserved hypothetical protein.;Transcript_evidence=CT836218 (DDBJ%2C Best hit);ORF_evidence=B8B405 (UniProt);TENOR=Os06t0218150-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	6046240	6046262	.	-	.	Parent=Os06t0218150-00
Chr06	irgsp1_rep	CDS	6045992	6046239	.	-	0	Parent=Os06t0218150-00
Chr06	irgsp1_rep	CDS	6045844	6045883	.	-	1	Parent=Os06t0218150-00
Chr06	irgsp1_rep	CDS	6044540	6044596	.	-	0	Parent=Os06t0218150-00
Chr06	irgsp1_rep	three_prime_UTR	6044521	6044539	.	-	.	Parent=Os06t0218150-00
Chr06	irgsp1_rep	three_prime_UTR	6044317	6044408	.	-	.	Parent=Os06t0218150-00
Chr06	irgsp1_rep	three_prime_UTR	6043788	6043871	.	-	.	Parent=Os06t0218150-00
Chr06	irgsp1_rep	three_prime_UTR	6043657	6043695	.	-	.	Parent=Os06t0218150-00
Chr06	irgsp1_rep	three_prime_UTR	6043280	6043450	.	-	.	Parent=Os06t0218150-00
Chr06	irgsp1_rep	three_prime_UTR	6043157	6043198	.	-	.	Parent=Os06t0218150-00
Chr06	irgsp1_rep	three_prime_UTR	6042986	6043073	.	-	.	Parent=Os06t0218150-00
Chr06	irgsp1_rep	three_prime_UTR	6042020	6042084	.	-	.	Parent=Os06t0218150-00
Chr06	irgsp1_rep	three_prime_UTR	6041869	6041931	.	-	.	Parent=Os06t0218150-00
Chr06	irgsp1_rep	three_prime_UTR	6041725	6041797	.	-	.	Parent=Os06t0218150-00
Chr06	irgsp1_rep	three_prime_UTR	6041095	6041186	.	-	.	Parent=Os06t0218150-00
Chr06	irgsp1_rep	three_prime_UTR	6040136	6040207	.	-	.	Parent=Os06t0218150-00
Chr06	irgsp1_rep	three_prime_UTR	6039586	6039642	.	-	.	Parent=Os06t0218150-00
Chr06	irgsp1_rep	three_prime_UTR	6038687	6038735	.	-	.	Parent=Os06t0218150-00
Chr06	irgsp1_rep	three_prime_UTR	6038545	6038608	.	-	.	Parent=Os06t0218150-00
Chr06	irgsp1_rep	three_prime_UTR	6037644	6037733	.	-	.	Parent=Os06t0218150-00
Chr06	irgsp1_rep	three_prime_UTR	6036739	6037321	.	-	.	Parent=Os06t0218150-00
Chr06	irgsp1_rep	mRNA	6046735	6050762	.	-	.	ID=Os06t0218200-01;Name=Os06t0218200-01;Locus_id=Os06g0218200;Note=Similar to H0807C06-H0308C08.1 protein.;Transcript_evidence=AK120566 (DDBJ%2C Best hit);ORF_evidence=Q01HD2 (UniProt);NIAS_FLcDNA=J013133N09;TENOR=Os06t0218200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	6050467	6050762	.	-	.	Parent=Os06t0218200-01
Chr06	irgsp1_rep	CDS	6050404	6050466	.	-	0	Parent=Os06t0218200-01
Chr06	irgsp1_rep	CDS	6048825	6049220	.	-	0	Parent=Os06t0218200-01
Chr06	irgsp1_rep	three_prime_UTR	6047667	6048824	.	-	.	Parent=Os06t0218200-01
Chr06	irgsp1_rep	three_prime_UTR	6047363	6047593	.	-	.	Parent=Os06t0218200-01
Chr06	irgsp1_rep	three_prime_UTR	6046735	6047281	.	-	.	Parent=Os06t0218200-01
Chr06	irgsp1_rep	mRNA	6058841	6060541	.	-	.	ID=Os06t0218300-01;Name=Os06t0218300-01;Locus_id=Os06g0218300;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=AK108491 (DDBJ%2C Best hit);ORF_evidence=Q69QB2 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=002-143-G02;TENOR=Os06t0218300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	6060510	6060541	.	-	.	Parent=Os06t0218300-01
Chr06	irgsp1_rep	CDS	6059181	6060509	.	-	0	Parent=Os06t0218300-01
Chr06	irgsp1_rep	three_prime_UTR	6058841	6059180	.	-	.	Parent=Os06t0218300-01
Chr06	irgsp1_rep	mRNA	6085459	6097660	.	-	.	ID=Os06t0218500-01;Name=Os06t0218500-01;Locus_id=Os06g0218500;CGSNL Gene Symbol=MCM9;CGSNL Gene Name=MINI-CHROMOSOME MAINTENANCE PROTEIN 9;Oryzabase Gene Symbol Synonym(s)=OsMCM9;Oryzabase Gene Name Synonym(s)=mini-Chromosome maintenance protein 9;Note=MCM family protein.;Transcript_evidence=AK065677 (DDBJ%2C Best hit);ORF_evidence=NP_179021.3 (RefSeq);GO=Biological Process: DNA replication (GO:0006260),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=Mini-Chromosome maintenance%2C DNA-dependent ATPase (IPR001208),ATPase%2C AAA+ type%2C core (IPR003593),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=J013035N16;Oryzabase=7362;Expression=AK065677;TENOR=Os06t0218500-01;KEGG=Os06t0218500-01
Chr06	irgsp1_rep	five_prime_UTR	6097547	6097660	.	-	.	Parent=Os06t0218500-01
Chr06	irgsp1_rep	CDS	6097395	6097546	.	-	0	Parent=Os06t0218500-01
Chr06	irgsp1_rep	CDS	6097175	6097313	.	-	1	Parent=Os06t0218500-01
Chr06	irgsp1_rep	CDS	6097013	6097094	.	-	0	Parent=Os06t0218500-01
Chr06	irgsp1_rep	CDS	6096757	6096895	.	-	2	Parent=Os06t0218500-01
Chr06	irgsp1_rep	CDS	6096011	6096077	.	-	1	Parent=Os06t0218500-01
Chr06	irgsp1_rep	CDS	6095669	6095843	.	-	0	Parent=Os06t0218500-01
Chr06	irgsp1_rep	CDS	6095100	6095199	.	-	2	Parent=Os06t0218500-01
Chr06	irgsp1_rep	CDS	6094304	6094401	.	-	1	Parent=Os06t0218500-01
Chr06	irgsp1_rep	CDS	6093613	6093678	.	-	2	Parent=Os06t0218500-01
Chr06	irgsp1_rep	CDS	6093350	6093442	.	-	2	Parent=Os06t0218500-01
Chr06	irgsp1_rep	CDS	6092215	6092331	.	-	2	Parent=Os06t0218500-01
Chr06	irgsp1_rep	CDS	6091994	6092066	.	-	2	Parent=Os06t0218500-01
Chr06	irgsp1_rep	CDS	6090812	6090878	.	-	1	Parent=Os06t0218500-01
Chr06	irgsp1_rep	CDS	6090629	6090710	.	-	0	Parent=Os06t0218500-01
Chr06	irgsp1_rep	CDS	6090291	6090412	.	-	2	Parent=Os06t0218500-01
Chr06	irgsp1_rep	CDS	6090102	6090169	.	-	0	Parent=Os06t0218500-01
Chr06	irgsp1_rep	CDS	6089639	6089748	.	-	1	Parent=Os06t0218500-01
Chr06	irgsp1_rep	CDS	6089526	6089573	.	-	2	Parent=Os06t0218500-01
Chr06	irgsp1_rep	CDS	6089208	6089434	.	-	2	Parent=Os06t0218500-01
Chr06	irgsp1_rep	three_prime_UTR	6089129	6089207	.	-	.	Parent=Os06t0218500-01
Chr06	irgsp1_rep	three_prime_UTR	6088811	6088945	.	-	.	Parent=Os06t0218500-01
Chr06	irgsp1_rep	three_prime_UTR	6088663	6088711	.	-	.	Parent=Os06t0218500-01
Chr06	irgsp1_rep	three_prime_UTR	6086685	6087055	.	-	.	Parent=Os06t0218500-01
Chr06	irgsp1_rep	three_prime_UTR	6085459	6086510	.	-	.	Parent=Os06t0218500-01
Chr06	irgsp1_rep	mRNA	6088559	6097660	.	-	.	ID=Os06t0218500-02;Name=Os06t0218500-02;Locus_id=Os06g0218500;CGSNL Gene Symbol=MCM9;CGSNL Gene Name=MINI-CHROMOSOME MAINTENANCE PROTEIN 9;Oryzabase Gene Symbol Synonym(s)=OsMCM9;Oryzabase Gene Name Synonym(s)=mini-Chromosome maintenance protein 9;Note=MCM family protein.;Transcript_evidence=AK100667 (DDBJ%2C Best hit);ORF_evidence=NP_179021.3 (RefSeq);GO=Biological Process: DNA replication (GO:0006260),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=Mini-Chromosome maintenance%2C DNA-dependent ATPase (IPR001208),ATPase%2C AAA+ type%2C core (IPR003593),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=J023112H01;Oryzabase=7362;Expression=AK100667;TENOR=Os06t0218500-02;KEGG=Os06t0218500-02
Chr06	irgsp1_rep	five_prime_UTR	6097547	6097660	.	-	.	Parent=Os06t0218500-02
Chr06	irgsp1_rep	CDS	6097395	6097546	.	-	0	Parent=Os06t0218500-02
Chr06	irgsp1_rep	CDS	6097175	6097313	.	-	1	Parent=Os06t0218500-02
Chr06	irgsp1_rep	CDS	6097013	6097094	.	-	0	Parent=Os06t0218500-02
Chr06	irgsp1_rep	CDS	6096757	6096895	.	-	2	Parent=Os06t0218500-02
Chr06	irgsp1_rep	CDS	6096011	6096077	.	-	1	Parent=Os06t0218500-02
Chr06	irgsp1_rep	CDS	6095669	6095843	.	-	0	Parent=Os06t0218500-02
Chr06	irgsp1_rep	CDS	6095100	6095199	.	-	2	Parent=Os06t0218500-02
Chr06	irgsp1_rep	CDS	6094304	6094401	.	-	1	Parent=Os06t0218500-02
Chr06	irgsp1_rep	CDS	6093613	6093678	.	-	2	Parent=Os06t0218500-02
Chr06	irgsp1_rep	CDS	6093350	6093442	.	-	2	Parent=Os06t0218500-02
Chr06	irgsp1_rep	CDS	6092215	6092331	.	-	2	Parent=Os06t0218500-02
Chr06	irgsp1_rep	CDS	6091994	6092066	.	-	2	Parent=Os06t0218500-02
Chr06	irgsp1_rep	CDS	6090812	6090878	.	-	1	Parent=Os06t0218500-02
Chr06	irgsp1_rep	CDS	6090629	6090710	.	-	0	Parent=Os06t0218500-02
Chr06	irgsp1_rep	CDS	6090291	6090412	.	-	2	Parent=Os06t0218500-02
Chr06	irgsp1_rep	CDS	6090102	6090169	.	-	0	Parent=Os06t0218500-02
Chr06	irgsp1_rep	CDS	6089639	6089748	.	-	1	Parent=Os06t0218500-02
Chr06	irgsp1_rep	CDS	6089526	6089573	.	-	2	Parent=Os06t0218500-02
Chr06	irgsp1_rep	CDS	6089208	6089434	.	-	2	Parent=Os06t0218500-02
Chr06	irgsp1_rep	three_prime_UTR	6089129	6089207	.	-	.	Parent=Os06t0218500-02
Chr06	irgsp1_rep	three_prime_UTR	6088811	6088945	.	-	.	Parent=Os06t0218500-02
Chr06	irgsp1_rep	three_prime_UTR	6088559	6088711	.	-	.	Parent=Os06t0218500-02
Chr06	irgsp1_rep	mRNA	6087258	6088705	.	-	.	ID=Os06t0218500-03;Name=Os06t0218500-03;Locus_id=Os06g0218500;CGSNL Gene Symbol=MCM9;CGSNL Gene Name=MINI-CHROMOSOME MAINTENANCE PROTEIN 9;Oryzabase Gene Symbol Synonym(s)=OsMCM9;Oryzabase Gene Name Synonym(s)=mini-Chromosome maintenance protein 9;Note=Non-protein coding transcript.;Transcript_evidence=AK106768 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-115-F05;Oryzabase=7362;TENOR=Os06t0218500-03
Chr06	irgsp1_rep	exon	6087258	6088705	.	-	.	Parent=Os06t0218500-03
Chr06	irgsp1_rep	mRNA	6086859	6088128	.	+	.	ID=Os06t0218600-01;Name=Os06t0218600-01;Locus_id=Os06g0218600;CGSNL Gene Symbol=UCL16;CGSNL Gene Name=UCLACYANIN-LIKE PROTEIN 16;Oryzabase Gene Symbol Synonym(s)=OsUCL16;Oryzabase Gene Name Synonym(s)=uclacyanin-like protein 16;Note=Cupredoxin domain containing protein.;Transcript_evidence=AK072802 (DDBJ%2C Best hit),AK104000 (DDBJ%2C Best hit),AK104260 (DDBJ%2C Best hit);ORF_evidence=NP_001152236.1 (RefSeq);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);NIAS_FLcDNA=J023135E05,001-019-E04,006-309-G10;Oryzabase=9765;TENOR=Os06t0218600-01
Chr06	irgsp1_rep	five_prime_UTR	6086859	6086933	.	+	.	Parent=Os06t0218600-01
Chr06	irgsp1_rep	CDS	6086934	6087096	.	+	0	Parent=Os06t0218600-01
Chr06	irgsp1_rep	CDS	6087481	6087914	.	+	2	Parent=Os06t0218600-01
Chr06	irgsp1_rep	three_prime_UTR	6087915	6088128	.	+	.	Parent=Os06t0218600-01
Chr06	irgsp1_rep	mRNA	6101061	6102004	.	+	.	ID=Os06t0218800-01;Name=Os06t0218800-01;Locus_id=Os06g0218800;Note=Uncharacterised protein family UPF0503 domain containing protein.;Transcript_evidence=AK073565 (DDBJ%2C Best hit),AK104975 (DDBJ%2C Best hit);ORF_evidence=B8B407 (UniProt);InterPro=Uncharacterised protein family UPF0503 (IPR008004);NIAS_FLcDNA=J033041B13,001-123-A11;Expression=AK073565;TENOR=Os06t0218800-01;KEGG=Os06t0218800-01
Chr06	irgsp1_rep	five_prime_UTR	6101061	6101144	.	+	.	Parent=Os06t0218800-01
Chr06	irgsp1_rep	CDS	6101145	6101690	.	+	0	Parent=Os06t0218800-01
Chr06	irgsp1_rep	three_prime_UTR	6101691	6102004	.	+	.	Parent=Os06t0218800-01
Chr06	irgsp1_rep	mRNA	6102185	6104364	.	-	.	ID=Os06t0218900-00;Name=Os06t0218900-00;Locus_id=Os06g0218900;Note=Similar to predicted protein.;Transcript_evidence=CT837875 (DDBJ%2C Best hit);ORF_evidence=NP_001057160.1 (RefSeq);TENOR=Os06t0218900-00;KEGG=Os06t0218900-00
Chr06	irgsp1_rep	five_prime_UTR	6104364	6104364	.	-	.	Parent=Os06t0218900-00
Chr06	irgsp1_rep	CDS	6104295	6104363	.	-	0	Parent=Os06t0218900-00
Chr06	irgsp1_rep	CDS	6103752	6103971	.	-	0	Parent=Os06t0218900-00
Chr06	irgsp1_rep	CDS	6103262	6103368	.	-	2	Parent=Os06t0218900-00
Chr06	irgsp1_rep	CDS	6102674	6103108	.	-	0	Parent=Os06t0218900-00
Chr06	irgsp1_rep	three_prime_UTR	6102185	6102673	.	-	.	Parent=Os06t0218900-00
Chr06	irgsp1_rep	mRNA	6147480	6150466	.	+	.	ID=Os06t0219400-00;Name=Os06t0219400-00;Locus_id=Os06g0219400;Note=GDP-fucose protein O-fucosyltransferase domain containing protein.;Transcript_evidence=BT041856 (DDBJ);ORF_evidence=Q67X84 (UniProt);InterPro=GDP-fucose protein O-fucosyltransferase (IPR019378);TENOR=Os06t0219400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	6147480	6147671	.	+	0	Parent=Os06t0219400-00
Chr06	irgsp1_rep	CDS	6148700	6148788	.	+	0	Parent=Os06t0219400-00
Chr06	irgsp1_rep	CDS	6148865	6149045	.	+	1	Parent=Os06t0219400-00
Chr06	irgsp1_rep	CDS	6149155	6149283	.	+	0	Parent=Os06t0219400-00
Chr06	irgsp1_rep	CDS	6149370	6149467	.	+	0	Parent=Os06t0219400-00
Chr06	irgsp1_rep	CDS	6149619	6149820	.	+	1	Parent=Os06t0219400-00
Chr06	irgsp1_rep	CDS	6149903	6150091	.	+	0	Parent=Os06t0219400-00
Chr06	irgsp1_rep	three_prime_UTR	6150092	6150106	.	+	.	Parent=Os06t0219400-00
Chr06	irgsp1_rep	three_prime_UTR	6150273	6150466	.	+	.	Parent=Os06t0219400-00
Chr06	irgsp1_rep	mRNA	6152338	6153502	.	-	.	ID=Os06t0219500-00;Name=Os06t0219500-00;Locus_id=Os06g0219500;Note=Similar to 26.2 kDa heat shock protein%2C mitochondrial.;Transcript_evidence=BT039465 (DDBJ);ORF_evidence=Q67X83 (UniProt);InterPro=Heat shock protein Hsp20 (IPR002068),HSP20-like chaperone (IPR008978);TENOR=Os06t0219500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	6153093	6153502	.	-	0	Parent=Os06t0219500-00
Chr06	irgsp1_rep	CDS	6152888	6153029	.	-	1	Parent=Os06t0219500-00
Chr06	irgsp1_rep	CDS	6152338	6152715	.	-	0	Parent=Os06t0219500-00
Chr06	irgsp1_rep	mRNA	6155940	6159841	.	+	.	ID=Os06t0219600-01;Name=Os06t0219600-01;Locus_id=Os06g0219600;CGSNL Gene Symbol=PABN2;CGSNL Gene Name=POLY (A) BINDING PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsPABN2;Oryzabase Gene Name Synonym(s)=poly (A) binding protein 2;Note=Similar to Poly(A)-binding protein II-like.;Transcript_evidence=AK060429 (DDBJ%2C Best hit),AK099019 (DDBJ%2C Best hit);ORF_evidence=B4FZJ1 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-011-A07,J013118A14;Oryzabase=22838;TENOR=Os06t0219600-01
Chr06	irgsp1_rep	five_prime_UTR	6155940	6156043	.	+	.	Parent=Os06t0219600-01
Chr06	irgsp1_rep	CDS	6156044	6156136	.	+	0	Parent=Os06t0219600-01
Chr06	irgsp1_rep	CDS	6156257	6156356	.	+	0	Parent=Os06t0219600-01
Chr06	irgsp1_rep	CDS	6157752	6157822	.	+	2	Parent=Os06t0219600-01
Chr06	irgsp1_rep	CDS	6159056	6159247	.	+	0	Parent=Os06t0219600-01
Chr06	irgsp1_rep	CDS	6159351	6159469	.	+	0	Parent=Os06t0219600-01
Chr06	irgsp1_rep	CDS	6159577	6159616	.	+	1	Parent=Os06t0219600-01
Chr06	irgsp1_rep	three_prime_UTR	6159617	6159841	.	+	.	Parent=Os06t0219600-01
Chr06	irgsp1_rep	mRNA	6160836	6163651	.	-	.	ID=Os06t0219700-01;Name=Os06t0219700-01;Locus_id=Os06g0219700;Oryzabase Gene Symbol Synonym(s)=OsFbox304%2C Os_F0494;Oryzabase Gene Name Synonym(s)=F-box protein 304;Note=Similar to TA2 protein (Fragment).;Transcript_evidence=AK070008 (DDBJ%2C Best hit);ORF_evidence=B6T3M0 (UniProt);NIAS_FLcDNA=J023036O11;Oryzabase=15980;Expression=AK070008;TENOR=Os06t0219700-01;KEGG=Os06t0219700-01
Chr06	irgsp1_rep	five_prime_UTR	6163528	6163651	.	-	.	Parent=Os06t0219700-01
Chr06	irgsp1_rep	five_prime_UTR	6162945	6162984	.	-	.	Parent=Os06t0219700-01
Chr06	irgsp1_rep	CDS	6162634	6162944	.	-	0	Parent=Os06t0219700-01
Chr06	irgsp1_rep	CDS	6161159	6161801	.	-	1	Parent=Os06t0219700-01
Chr06	irgsp1_rep	three_prime_UTR	6160836	6161158	.	-	.	Parent=Os06t0219700-01
Chr06	irgsp1_rep	mRNA	6171589	6176329	.	-	.	ID=Os06t0219800-01;Name=Os06t0219800-01;Locus_id=Os06g0219800;Note=Similar to Protein phosphatase 2A%2C regulatory subunit B' (PP2A%2C subunit B'%2C PR53 isoform) (Phosphotyrosyl phosphatase activator) (PTPA). Splice isoform 3.;Transcript_evidence=AK072030 (DDBJ%2C Best hit),AK100405 (DDBJ%2C Best hit);ORF_evidence=NP_001150546.1 (RefSeq);NIAS_FLcDNA=J013106H10,J023087A16;TENOR=Os06t0219800-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	6176258	6176329	.	-	.	Parent=Os06t0219800-01
Chr06	irgsp1_rep	CDS	6175077	6176257	.	-	0	Parent=Os06t0219800-01
Chr06	irgsp1_rep	CDS	6172061	6172070	.	-	1	Parent=Os06t0219800-01
Chr06	irgsp1_rep	three_prime_UTR	6171589	6172060	.	-	.	Parent=Os06t0219800-01
Chr06	irgsp1_rep	mRNA	6177896	6179163	.	-	.	ID=Os06t0219900-01;Name=Os06t0219900-01;Locus_id=Os06g0219900;Note=Similar to Phi-1 protein.;Transcript_evidence=AK058704 (DDBJ%2C Best hit);ORF_evidence=B6UCF7 (UniProt);InterPro=Phosphate-induced protein 1 (IPR006766);NIAS_FLcDNA=001-019-C08;Expression=AK058704;TENOR=Os06t0219900-01;KEGG=Os06t0219900-01
Chr06	irgsp1_rep	five_prime_UTR	6179091	6179163	.	-	.	Parent=Os06t0219900-01
Chr06	irgsp1_rep	CDS	6178146	6179090	.	-	0	Parent=Os06t0219900-01
Chr06	irgsp1_rep	three_prime_UTR	6177896	6178145	.	-	.	Parent=Os06t0219900-01
Chr06	irgsp1_rep	mRNA	6180335	6181296	.	-	.	ID=Os06t0220000-01;Name=Os06t0220000-01;Locus_id=Os06g0220000;Note=Similar to Phi-1 protein.;Transcript_evidence=AK061401 (DDBJ%2C Best hit);ORF_evidence=B6SN51 (UniProt);InterPro=Phosphate-induced protein 1 (IPR006766);NIAS_FLcDNA=006-305-G10;Expression=AK061401;TENOR=Os06t0220000-01;KEGG=Os06t0220000-01
Chr06	irgsp1_rep	CDS	6180445	6181296	.	-	0	Parent=Os06t0220000-01
Chr06	irgsp1_rep	three_prime_UTR	6180335	6180444	.	-	.	Parent=Os06t0220000-01
Chr06	irgsp1_rep	mRNA	6180408	6181596	.	+	.	ID=Os06t0220100-01;Name=Os06t0220100-01;Locus_id=Os06g0220100;Note=Hypothetical protein.;Transcript_evidence=AK099621 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013053E02;TENOR=Os06t0220100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	6180408	6180408	.	+	.	Parent=Os06t0220100-01
Chr06	irgsp1_rep	CDS	6180409	6180835	.	+	0	Parent=Os06t0220100-01
Chr06	irgsp1_rep	CDS	6181190	6181443	.	+	2	Parent=Os06t0220100-01
Chr06	irgsp1_rep	three_prime_UTR	6181444	6181596	.	+	.	Parent=Os06t0220100-01
Chr06	irgsp1_rep	mRNA	6191490	6192496	.	+	.	ID=Os06t0220200-00;Name=Os06t0220200-00;Locus_id=Os06g0220200;Note=Similar to Phi-1-like phosphate-induced protein.;Transcript_evidence=EU954166 (DDBJ);ORF_evidence=B6SN51 (UniProt);InterPro=Phosphate-induced protein 1 (IPR006766);TENOR=Os06t0220200-00;KEGG=Os06t0220200-00
Chr06	irgsp1_rep	five_prime_UTR	6191490	6191530	.	+	.	Parent=Os06t0220200-00
Chr06	irgsp1_rep	CDS	6191531	6192496	.	+	0	Parent=Os06t0220200-00
Chr06	irgsp1_rep	mRNA	6199518	6200510	.	+	.	ID=Os06t0220300-00;Name=Os06t0220300-00;Locus_id=Os06g0220300;Note=Similar to Phi-1 protein.;Transcript_evidence=tplb0031o23 (Wheat FLcDNA);ORF_evidence=B6SN51 (UniProt);InterPro=Phosphate-induced protein 1 (IPR006766);TENOR=Os06t0220300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	6199518	6200468	.	+	0	Parent=Os06t0220300-00
Chr06	irgsp1_rep	three_prime_UTR	6200469	6200510	.	+	.	Parent=Os06t0220300-00
Chr06	irgsp1_rep	mRNA	6205613	6207557	.	+	.	ID=Os06t0220500-01;Name=Os06t0220500-01;Locus_id=Os06g0220500;Oryzabase Gene Name Synonym(s)=Cytokinin-O-glucosyltransferase2%2C Cytokinin-O-glucosyltransferase 2;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK063324 (DDBJ%2C Best hit);ORF_evidence=NP_001150098.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=001-113-H05;Oryzabase=21395;Expression=AK063324;TENOR=Os06t0220500-01;KEGG=Os06t0220500-01
Chr06	irgsp1_rep	five_prime_UTR	6205613	6205620	.	+	.	Parent=Os06t0220500-01
Chr06	irgsp1_rep	CDS	6205621	6206185	.	+	0	Parent=Os06t0220500-01
Chr06	irgsp1_rep	CDS	6206323	6207266	.	+	2	Parent=Os06t0220500-01
Chr06	irgsp1_rep	three_prime_UTR	6207267	6207557	.	+	.	Parent=Os06t0220500-01
Chr06	irgsp1_rep	mRNA	6208419	6214434	.	-	.	ID=Os06t0220600-01;Name=Os06t0220600-01;Locus_id=Os06g0220600;Oryzabase Gene Symbol Synonym(s)=RBP-157;Oryzabase Gene Name Synonym(s)=RNA-binding RBP-157;Note=RNA recognition motif domain domain containing protein.;Transcript_evidence=AK058664 (DDBJ%2C Best hit);ORF_evidence=A2YAS7 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-018-G07;Oryzabase=22090;TENOR=Os06t0220600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	6214098	6214434	.	-	.	Parent=Os06t0220600-01
Chr06	irgsp1_rep	CDS	6213846	6214097	.	-	0	Parent=Os06t0220600-01
Chr06	irgsp1_rep	CDS	6213632	6213758	.	-	0	Parent=Os06t0220600-01
Chr06	irgsp1_rep	CDS	6211397	6211553	.	-	2	Parent=Os06t0220600-01
Chr06	irgsp1_rep	CDS	6210598	6210631	.	-	1	Parent=Os06t0220600-01
Chr06	irgsp1_rep	CDS	6209610	6209991	.	-	0	Parent=Os06t0220600-01
Chr06	irgsp1_rep	CDS	6208660	6208739	.	-	2	Parent=Os06t0220600-01
Chr06	irgsp1_rep	three_prime_UTR	6208419	6208659	.	-	.	Parent=Os06t0220600-01
Chr06	irgsp1_rep	mRNA	6213604	6214069	.	+	.	ID=Os06t0220701-00;Name=Os06t0220701-00;Locus_id=Os06g0220701;Note=Hypothetical gene.;Transcript_evidence=EU941442 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0220701-00;KEGG=Os06t0220701-00
Chr06	irgsp1_rep	five_prime_UTR	6213604	6213604	.	+	.	Parent=Os06t0220701-00
Chr06	irgsp1_rep	CDS	6213605	6213874	.	+	0	Parent=Os06t0220701-00
Chr06	irgsp1_rep	three_prime_UTR	6213875	6214069	.	+	.	Parent=Os06t0220701-00
Chr06	irgsp1_rep	mRNA	6222703	6224694	.	+	.	ID=Os06t0220800-01;Name=Os06t0220800-01;Locus_id=Os06g0220800;Oryzabase Gene Symbol Synonym(s)=OsAPRL2%2C APRL2;Oryzabase Gene Name Synonym(s)=adenosine 5'-phosphosulfate reductase-like protein 2%2C Adenosine 5'-phosphosulfate reductase-like 2;Note=Thioredoxin domain 2 containing protein.;Transcript_evidence=AK059876 (DDBJ%2C Best hit);ORF_evidence=Q67VZ8 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454);InterPro=Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766);NIAS_FLcDNA=006-207-F09;Oryzabase=14069;Expression=AK059876;TENOR=Os06t0220800-01;KEGG=Os06t0220800-01
Chr06	irgsp1_rep	five_prime_UTR	6222703	6222707	.	+	.	Parent=Os06t0220800-01
Chr06	irgsp1_rep	CDS	6222708	6222869	.	+	0	Parent=Os06t0220800-01
Chr06	irgsp1_rep	CDS	6223457	6223644	.	+	0	Parent=Os06t0220800-01
Chr06	irgsp1_rep	CDS	6223727	6223851	.	+	1	Parent=Os06t0220800-01
Chr06	irgsp1_rep	CDS	6224041	6224414	.	+	2	Parent=Os06t0220800-01
Chr06	irgsp1_rep	three_prime_UTR	6224415	6224694	.	+	.	Parent=Os06t0220800-01
Chr06	irgsp1_rep	mRNA	6233176	6233477	.	+	.	ID=Os06t0220900-00;Name=Os06t0220900-00;Locus_id=Os06g0220900;Note=Conserved hypothetical protein.;Transcript_evidence=AK250881 (DDBJ);ORF_evidence=NP_001057173.1 (RefSeq);TENOR=Os06t0220900-00;KEGG=Os06t0220900-00
Chr06	irgsp1_rep	five_prime_UTR	6233176	6233207	.	+	.	Parent=Os06t0220900-00
Chr06	irgsp1_rep	CDS	6233208	6233477	.	+	0	Parent=Os06t0220900-00
Chr06	irgsp1_rep	mRNA	6239975	6241172	.	+	.	ID=Os06t0221000-00;Name=Os06t0221000-00;Locus_id=Os06g0221000;Note=Similar to P-type R2R3 Myb protein (Fragment).;Transcript_evidence=AK365447 (DDBJ);ORF_evidence=NP_001057174.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);TENOR=Os06t0221000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	6239975	6240042	.	+	.	Parent=Os06t0221000-00
Chr06	irgsp1_rep	CDS	6240043	6240175	.	+	0	Parent=Os06t0221000-00
Chr06	irgsp1_rep	CDS	6240265	6240394	.	+	2	Parent=Os06t0221000-00
Chr06	irgsp1_rep	CDS	6240467	6241172	.	+	1	Parent=Os06t0221000-00
Chr06	irgsp1_rep	mRNA	6243743	6247717	.	-	.	ID=Os06t0221100-01;Name=Os06t0221100-01;Locus_id=Os06g0221100;Note=TLDc domain containing protein.;Transcript_evidence=AK102978 (DDBJ%2C Best hit);ORF_evidence=B6TJ62 (UniProt);InterPro=TLDc (IPR006571);NIAS_FLcDNA=J033115N17;Expression=AK102978;TENOR=Os06t0221100-01;KEGG=Os06t0221100-01
Chr06	irgsp1_rep	five_prime_UTR	6247468	6247717	.	-	.	Parent=Os06t0221100-01
Chr06	irgsp1_rep	CDS	6247351	6247467	.	-	0	Parent=Os06t0221100-01
Chr06	irgsp1_rep	CDS	6246054	6246568	.	-	0	Parent=Os06t0221100-01
Chr06	irgsp1_rep	CDS	6245892	6245964	.	-	1	Parent=Os06t0221100-01
Chr06	irgsp1_rep	CDS	6244679	6244759	.	-	0	Parent=Os06t0221100-01
Chr06	irgsp1_rep	CDS	6244527	6244590	.	-	0	Parent=Os06t0221100-01
Chr06	irgsp1_rep	CDS	6244341	6244428	.	-	2	Parent=Os06t0221100-01
Chr06	irgsp1_rep	CDS	6244123	6244207	.	-	1	Parent=Os06t0221100-01
Chr06	irgsp1_rep	CDS	6243952	6244035	.	-	0	Parent=Os06t0221100-01
Chr06	irgsp1_rep	three_prime_UTR	6243743	6243951	.	-	.	Parent=Os06t0221100-01
Chr06	irgsp1_rep	mRNA	6250718	6253707	.	+	.	ID=Os06t0221200-01;Name=Os06t0221200-01;Locus_id=Os06g0221200;CGSNL Gene Symbol=ANN5;CGSNL Gene Name=ANNEXIN 5;Oryzabase Gene Symbol Synonym(s)=OsANN5;Oryzabase Gene Name Synonym(s)=Annexin 5;Note=Similar to Annexin p33.;Transcript_evidence=AK072559 (DDBJ%2C Best hit);ORF_evidence=C7EN89 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509),Molecular Function: calcium-dependent phospholipid binding (GO:0005544);InterPro=Annexin (IPR001464),Annexin%2C plant (IPR009118),Annexin repeat%2C conserved site (IPR018252),Annexin repeat (IPR018502);NIAS_FLcDNA=J023132A10;Oryzabase=15468;Expression=AK072559;TENOR=Os06t0221200-01;KEGG=Os06t0221200-01
Chr06	irgsp1_rep	five_prime_UTR	6250718	6250811	.	+	.	Parent=Os06t0221200-01
Chr06	irgsp1_rep	CDS	6250812	6250887	.	+	0	Parent=Os06t0221200-01
Chr06	irgsp1_rep	CDS	6251012	6251157	.	+	2	Parent=Os06t0221200-01
Chr06	irgsp1_rep	CDS	6251269	6251493	.	+	0	Parent=Os06t0221200-01
Chr06	irgsp1_rep	CDS	6252093	6252305	.	+	0	Parent=Os06t0221200-01
Chr06	irgsp1_rep	CDS	6253190	6253483	.	+	0	Parent=Os06t0221200-01
Chr06	irgsp1_rep	three_prime_UTR	6253484	6253707	.	+	.	Parent=Os06t0221200-01
Chr06	irgsp1_rep	mRNA	6253707	6254494	.	-	.	ID=Os06t0221300-01;Name=Os06t0221300-01;Locus_id=Os06g0221300;Note=Similar to Dehydration stress-induced protein.;Transcript_evidence=AK108233 (DDBJ%2C Best hit);ORF_evidence=NP_001150220.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Lipoxygenase%2C LH2 (IPR001024),Lipase/lipooxygenase%2C PLAT/LH2 (IPR008976);NIAS_FLcDNA=002-140-G05;Expression=AK108233;TENOR=Os06t0221300-01;KEGG=Os06t0221300-01
Chr06	irgsp1_rep	five_prime_UTR	6254473	6254494	.	-	.	Parent=Os06t0221300-01
Chr06	irgsp1_rep	CDS	6253957	6254472	.	-	0	Parent=Os06t0221300-01
Chr06	irgsp1_rep	three_prime_UTR	6253707	6253956	.	-	.	Parent=Os06t0221300-01
Chr06	irgsp1_rep	mRNA	6279737	6281730	.	-	.	ID=Os06t0222100-00;Name=Os06t0222100-00;Locus_id=Os06g0222100;CGSNL Gene Symbol=TPP8;CGSNL Gene Name=TREHALOSE-6-PHOSPHATE PHOSHPHATASE 8;Oryzabase Gene Symbol Synonym(s)=OsTPP8%2C OsTPP2;Note=Similar to Ramosa 3 (Fragment).;Transcript_evidence=DQ436920 (DDBJ);ORF_evidence=Q1W5S5 (UniProt);GO=Biological Process: trehalose biosynthetic process (GO:0005992),Molecular Function: catalytic activity (GO:0003824);InterPro=Trehalose-phosphatase (IPR003337),HAD-like domain (IPR023214);Oryzabase=9983;TENOR=Os06t0222100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	6281220	6281730	.	-	0	Parent=Os06t0222100-00
Chr06	irgsp1_rep	CDS	6280872	6281134	.	-	2	Parent=Os06t0222100-00
Chr06	irgsp1_rep	CDS	6280512	6280589	.	-	0	Parent=Os06t0222100-00
Chr06	irgsp1_rep	CDS	6280323	6280400	.	-	0	Parent=Os06t0222100-00
Chr06	irgsp1_rep	CDS	6280159	6280228	.	-	0	Parent=Os06t0222100-00
Chr06	irgsp1_rep	CDS	6279967	6280040	.	-	2	Parent=Os06t0222100-00
Chr06	irgsp1_rep	CDS	6279737	6279853	.	-	0	Parent=Os06t0222100-00
Chr06	irgsp1_rep	mRNA	6304589	6305923	.	-	.	ID=Os06t0222400-01;Name=Os06t0222400-01;Locus_id=Os06g0222400;CGSNL Gene Symbol=ERF120;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 120;Oryzabase Gene Symbol Synonym(s)=OsERF#120%2C OsERF120%2C AP2/EREBP#105%2C AP2/EREBP105;Oryzabase Gene Name Synonym(s)=ethylene response factor 120%2C APETALA2/ethylene-responsive element binding protein 105;Note=Similar to DRE-binding protein 2.;Transcript_evidence=AK063886 (DDBJ%2C Best hit);ORF_evidence=C3UZ67 (UniProt);NIAS_FLcDNA=001-122-G01;Oryzabase=10615;Expression=AK063886;TENOR=Os06t0222400-01;KEGG=Os06t0222400-01
Chr06	irgsp1_rep	five_prime_UTR	6305876	6305923	.	-	.	Parent=Os06t0222400-01
Chr06	irgsp1_rep	CDS	6305831	6305875	.	-	0	Parent=Os06t0222400-01
Chr06	irgsp1_rep	CDS	6304945	6305187	.	-	0	Parent=Os06t0222400-01
Chr06	irgsp1_rep	three_prime_UTR	6304589	6304944	.	-	.	Parent=Os06t0222400-01
Chr06	irgsp1_rep	mRNA	6344013	6347601	.	-	.	ID=Os06t0222800-01;Name=Os06t0222800-01;Locus_id=Os06g0222800;Note=Metallophosphoesterase domain containing protein.;Transcript_evidence=AK101914 (DDBJ%2C Best hit);ORF_evidence=B8B420 (UniProt);NIAS_FLcDNA=J033071H10;Expression=AK101914;TENOR=Os06t0222800-01;KEGG=Os06t0222800-01
Chr06	irgsp1_rep	CDS	6347269	6347601	.	-	0	Parent=Os06t0222800-01
Chr06	irgsp1_rep	CDS	6346172	6346725	.	-	0	Parent=Os06t0222800-01
Chr06	irgsp1_rep	CDS	6345762	6345845	.	-	1	Parent=Os06t0222800-01
Chr06	irgsp1_rep	CDS	6345295	6345544	.	-	1	Parent=Os06t0222800-01
Chr06	irgsp1_rep	three_prime_UTR	6345268	6345294	.	-	.	Parent=Os06t0222800-01
Chr06	irgsp1_rep	three_prime_UTR	6344631	6345145	.	-	.	Parent=Os06t0222800-01
Chr06	irgsp1_rep	three_prime_UTR	6344013	6344525	.	-	.	Parent=Os06t0222800-01
Chr06	irgsp1_rep	mRNA	6349120	6352936	.	-	.	ID=Os06t0222900-01;Name=Os06t0222900-01;Locus_id=Os06g0222900;Note=Similar to Type I inositol-1%2C4%2C5-trisphosphate 5-phosphatase 2 (EC 3.1.3.56) (At5PTase2).;Transcript_evidence=AK109820 (DDBJ%2C Best hit);ORF_evidence=NP_201314.3 (RefSeq);GO=Molecular Function: inositol or phosphatidylinositol phosphatase activity (GO:0004437);InterPro=Inositol polyphosphate-related phosphatase (IPR000300),Endonuclease/exonuclease/phosphatase (IPR005135);NIAS_FLcDNA=002-148-A06;Expression=AK109820;TENOR=Os06t0222900-01;KEGG=Os06t0222900-01 (EC:3.1.3.56)
Chr06	irgsp1_rep	five_prime_UTR	6352784	6352936	.	-	.	Parent=Os06t0222900-01
Chr06	irgsp1_rep	five_prime_UTR	6352661	6352672	.	-	.	Parent=Os06t0222900-01
Chr06	irgsp1_rep	CDS	6352618	6352660	.	-	0	Parent=Os06t0222900-01
Chr06	irgsp1_rep	CDS	6352486	6352524	.	-	2	Parent=Os06t0222900-01
Chr06	irgsp1_rep	CDS	6352267	6352363	.	-	2	Parent=Os06t0222900-01
Chr06	irgsp1_rep	CDS	6352048	6352152	.	-	1	Parent=Os06t0222900-01
Chr06	irgsp1_rep	CDS	6350629	6351459	.	-	1	Parent=Os06t0222900-01
Chr06	irgsp1_rep	CDS	6350008	6350116	.	-	1	Parent=Os06t0222900-01
Chr06	irgsp1_rep	CDS	6349754	6349902	.	-	0	Parent=Os06t0222900-01
Chr06	irgsp1_rep	CDS	6349415	6349643	.	-	1	Parent=Os06t0222900-01
Chr06	irgsp1_rep	three_prime_UTR	6349120	6349414	.	-	.	Parent=Os06t0222900-01
Chr06	irgsp1_rep	mRNA	6369180	6371326	.	-	.	ID=Os06t0223200-00;Name=Os06t0223200-00;Locus_id=Os06g0223200;Note=Similar to predicted protein.;Transcript_evidence=BT033838 (DDBJ);ORF_evidence=B6UF66 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: intramolecular transferase activity%2C phosphotransferases (GO:0016868);InterPro=Phosphoglycerate/bisphosphoglycerate mutase%2C active site (IPR001345),Phosphoglycerate mutase 1 (IPR005952),Histidine phosphatase superfamily%2C clade-1 (IPR013078);TENOR=Os06t0223200-00;KEGG=Os06t0223200-00 (EC:5.4.2.1)
Chr06	irgsp1_rep	CDS	6371158	6371326	.	-	0	Parent=Os06t0223200-00
Chr06	irgsp1_rep	CDS	6370730	6371043	.	-	2	Parent=Os06t0223200-00
Chr06	irgsp1_rep	three_prime_UTR	6370595	6370729	.	-	.	Parent=Os06t0223200-00
Chr06	irgsp1_rep	three_prime_UTR	6370329	6370485	.	-	.	Parent=Os06t0223200-00
Chr06	irgsp1_rep	three_prime_UTR	6370046	6370147	.	-	.	Parent=Os06t0223200-00
Chr06	irgsp1_rep	three_prime_UTR	6369824	6369943	.	-	.	Parent=Os06t0223200-00
Chr06	irgsp1_rep	three_prime_UTR	6369180	6369223	.	-	.	Parent=Os06t0223200-00
Chr06	irgsp1_rep	mRNA	6372353	6376374	.	+	.	ID=Os06t0223300-01;Name=Os06t0223300-01;Locus_id=Os06g0223300;RAP-DB Gene Symbol Synonym(s)=MADS63%2C OsMADS63;RAP-DB Gene Name Synonym(s)=MADS BOX GENE 63%2C MADS box gene63%2C MADS box gene 63%2C MADS-box transcription factor 63;CGSNL Gene Symbol=MADS63;CGSNL Gene Name=MADS BOX GENE 63;Oryzabase Gene Symbol Synonym(s)=OsMADS63;Oryzabase Gene Name Synonym(s)=MADS box gene63%2C MADS box gene 63%2C MADS-box transcription factor 63;Note=MADS box transcription factor%2C Pollen maturation;Transcript_evidence=AK111776,FN663130;ORF_evidence=Q67UI9;GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box (IPR002100);NIAS_FLcDNA=J023075K19;Manual Curation=April 22%2C 2014;Literature_PMID=23613199,21813465,17640358;Oryzabase=12300;TENOR=Os06t0223300-01;KEGG=Os06t0223300-01
Chr06	irgsp1_rep	five_prime_UTR	6372353	6372428	.	+	.	Parent=Os06t0223300-01
Chr06	irgsp1_rep	CDS	6372429	6372613	.	+	0	Parent=Os06t0223300-01
Chr06	irgsp1_rep	CDS	6372731	6372784	.	+	1	Parent=Os06t0223300-01
Chr06	irgsp1_rep	CDS	6372920	6372938	.	+	1	Parent=Os06t0223300-01
Chr06	irgsp1_rep	CDS	6373031	6373095	.	+	0	Parent=Os06t0223300-01
Chr06	irgsp1_rep	CDS	6373235	6373268	.	+	1	Parent=Os06t0223300-01
Chr06	irgsp1_rep	CDS	6373372	6373433	.	+	0	Parent=Os06t0223300-01
Chr06	irgsp1_rep	CDS	6373538	6373637	.	+	1	Parent=Os06t0223300-01
Chr06	irgsp1_rep	CDS	6373865	6373927	.	+	0	Parent=Os06t0223300-01
Chr06	irgsp1_rep	CDS	6375040	6375194	.	+	0	Parent=Os06t0223300-01
Chr06	irgsp1_rep	CDS	6375292	6375469	.	+	1	Parent=Os06t0223300-01
Chr06	irgsp1_rep	CDS	6375970	6376137	.	+	0	Parent=Os06t0223300-01
Chr06	irgsp1_rep	three_prime_UTR	6376138	6376374	.	+	.	Parent=Os06t0223300-01
Chr06	irgsp1_rep	mRNA	6395390	6397221	.	-	.	ID=Os06t0223700-01;Name=Os06t0223700-01;Locus_id=Os06g0223700;Note=Protein of unknown function DUF581 family protein.;Transcript_evidence=AK070214 (DDBJ%2C Best hit);ORF_evidence=A2YAU4 (UniProt);InterPro=Protein of unknown function DUF581 (IPR007650);NIAS_FLcDNA=J023045L17;Expression=AK070214;TENOR=Os06t0223700-01;KEGG=Os06t0223700-01
Chr06	irgsp1_rep	five_prime_UTR	6397129	6397221	.	-	.	Parent=Os06t0223700-01
Chr06	irgsp1_rep	CDS	6396842	6397128	.	-	0	Parent=Os06t0223700-01
Chr06	irgsp1_rep	CDS	6395721	6395862	.	-	1	Parent=Os06t0223700-01
Chr06	irgsp1_rep	three_prime_UTR	6395390	6395720	.	-	.	Parent=Os06t0223700-01
Chr06	irgsp1_rep	mRNA	6401517	6406389	.	-	.	ID=Os06t0223800-01;Name=Os06t0223800-01;Locus_id=Os06g0223800;Oryzabase Gene Symbol Synonym(s)=CSIL1%2C OsCSIL1;Oryzabase Gene Name Synonym(s)=CSI-like 1%2C CELLULOSE SYNTHASE INTERACTING1-like 1;Note=C2 calcium-dependent membrane targeting domain containing protein.;Transcript_evidence=AK105686 (DDBJ%2C Best hit);ORF_evidence=B9FS99 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),Armadillo (IPR000225),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=001-201-B10;Oryzabase=22053;TENOR=Os06t0223800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	6403989	6406389	.	-	0	Parent=Os06t0223800-01
Chr06	irgsp1_rep	CDS	6403229	6403683	.	-	2	Parent=Os06t0223800-01
Chr06	irgsp1_rep	CDS	6402038	6402154	.	-	0	Parent=Os06t0223800-01
Chr06	irgsp1_rep	CDS	6401738	6401878	.	-	0	Parent=Os06t0223800-01
Chr06	irgsp1_rep	three_prime_UTR	6401517	6401737	.	-	.	Parent=Os06t0223800-01
Chr06	irgsp1_rep	mRNA	6411438	6412728	.	-	.	ID=Os06t0223900-01;Name=Os06t0223900-01;Locus_id=Os06g0223900;Note=Non-protein coding transcript.;Transcript_evidence=AK106908 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-119-A04;TENOR=Os06t0223900-01
Chr06	irgsp1_rep	exon	6412532	6412728	.	-	.	Parent=Os06t0223900-01
Chr06	irgsp1_rep	exon	6411438	6412044	.	-	.	Parent=Os06t0223900-01
Chr06	irgsp1_rep	mRNA	6419602	6420378	.	-	.	ID=Os06t0224000-00;Name=Os06t0224000-00;Locus_id=Os06g0224000;Note=Protein of unknown function DUF3049 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q67UI4 (UniProt);InterPro=Protein of unknown function DUF3049 (IPR021410);TENOR=Os06t0224000-00
Chr06	irgsp1_rep	CDS	6419602	6420378	.	-	0	Parent=Os06t0224000-00
Chr06	irgsp1_rep	mRNA	6435824	6439812	.	+	.	ID=Os06t0224100-01;Name=Os06t0224100-01;Locus_id=Os06g0224100;Note=Membrane-anchored ubiquitin-fold protein%2C HCG-1 domain containing protein.;Transcript_evidence=AK061083 (DDBJ%2C Best hit);ORF_evidence=Q67UI2 (UniProt);InterPro=Membrane-anchored ubiquitin-fold protein%2C HCG-1 (IPR017000);NIAS_FLcDNA=006-206-F10;Expression=AK061083;TENOR=Os06t0224100-01;KEGG=Os06t0224100-01
Chr06	irgsp1_rep	five_prime_UTR	6435824	6436089	.	+	.	Parent=Os06t0224100-01
Chr06	irgsp1_rep	CDS	6436090	6436240	.	+	0	Parent=Os06t0224100-01
Chr06	irgsp1_rep	CDS	6438199	6438366	.	+	2	Parent=Os06t0224100-01
Chr06	irgsp1_rep	CDS	6439260	6439321	.	+	2	Parent=Os06t0224100-01
Chr06	irgsp1_rep	three_prime_UTR	6439322	6439812	.	+	.	Parent=Os06t0224100-01
Chr06	irgsp1_rep	mRNA	6440527	6447606	.	-	.	ID=Os06t0224200-01;Name=Os06t0224200-01;Locus_id=Os06g0224200;Oryzabase Gene Symbol Synonym(s)=OsGRL12;Oryzabase Gene Name Synonym(s)=GRX-like protein 12%2C glutaredoxin-like protein 12;Note=Thioredoxin fold domain containing protein.;Transcript_evidence=AK067986 (DDBJ%2C Best hit);ORF_evidence=B8B477 (UniProt);GO=Biological Process: intracellular signal transduction (GO:0035556),Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=DEP domain (IPR000591),Glutaredoxin (IPR002109),Domain of unknown function DUF547 (IPR006869),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=J013122H21;Oryzabase=13602;Expression=AK067986;TENOR=Os06t0224200-01;KEGG=Os06t0224200-01
Chr06	irgsp1_rep	five_prime_UTR	6447397	6447606	.	-	.	Parent=Os06t0224200-01
Chr06	irgsp1_rep	five_prime_UTR	6445938	6445959	.	-	.	Parent=Os06t0224200-01
Chr06	irgsp1_rep	CDS	6444735	6445937	.	-	0	Parent=Os06t0224200-01
Chr06	irgsp1_rep	CDS	6444387	6444442	.	-	0	Parent=Os06t0224200-01
Chr06	irgsp1_rep	CDS	6444052	6444285	.	-	1	Parent=Os06t0224200-01
Chr06	irgsp1_rep	CDS	6443483	6443774	.	-	1	Parent=Os06t0224200-01
Chr06	irgsp1_rep	CDS	6442053	6442249	.	-	0	Parent=Os06t0224200-01
Chr06	irgsp1_rep	CDS	6440708	6440861	.	-	1	Parent=Os06t0224200-01
Chr06	irgsp1_rep	three_prime_UTR	6440527	6440707	.	-	.	Parent=Os06t0224200-01
Chr06	irgsp1_rep	mRNA	6450434	6450479	.	-	.	ID=Os06t0224300-00;Name=Os06t0224300-00;Locus_id=Os06g0224300;Note=Non-protein coding transcript.;Transcript_evidence=X02683 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0224300-00
Chr06	irgsp1_rep	exon	6450434	6450479	.	-	.	Parent=Os06t0224300-00
Chr06	irgsp1_rep	mRNA	6452927	6454454	.	-	.	ID=Os06t0224400-01;Name=Os06t0224400-01;Locus_id=Os06g0224400;Note=Mitochodrial transcription termination factor-related family protein.;Transcript_evidence=AK103852 (DDBJ%2C Best hit);ORF_evidence=B8B478 (UniProt);InterPro=Mitochodrial transcription termination factor-related (IPR003690);NIAS_FLcDNA=J033148L16;Expression=AK103852;TENOR=Os06t0224400-01;KEGG=Os06t0224400-01
Chr06	irgsp1_rep	five_prime_UTR	6454328	6454454	.	-	.	Parent=Os06t0224400-01
Chr06	irgsp1_rep	CDS	6453149	6454327	.	-	0	Parent=Os06t0224400-01
Chr06	irgsp1_rep	three_prime_UTR	6452927	6453148	.	-	.	Parent=Os06t0224400-01
Chr06	irgsp1_rep	mRNA	6461189	6462628	.	-	.	ID=Os06t0224500-01;Name=Os06t0224500-01;Locus_id=Os06g0224500;Note=Mitochodrial transcription termination factor-related family protein.;Transcript_evidence=AK100116 (DDBJ%2C Best hit);ORF_evidence=B8B480 (UniProt);InterPro=Mitochodrial transcription termination factor-related (IPR003690);NIAS_FLcDNA=J023007D12;Expression=AK100116;TENOR=Os06t0224500-01;KEGG=Os06t0224500-01
Chr06	irgsp1_rep	five_prime_UTR	6462566	6462628	.	-	.	Parent=Os06t0224500-01
Chr06	irgsp1_rep	CDS	6461396	6462565	.	-	0	Parent=Os06t0224500-01
Chr06	irgsp1_rep	three_prime_UTR	6461189	6461395	.	-	.	Parent=Os06t0224500-01
Chr06	irgsp1_rep	mRNA	6463494	6465270	.	-	.	ID=Os06t0224650-01;Name=Os06t0224650-01;Locus_id=Os06g0224650;Note=Mitochodrial transcription termination factor-related family protein.;Transcript_evidence=AK241150 (DDBJ%2C Best hit);ORF_evidence=NP_001174669.1 (RefSeq);InterPro=Mitochodrial transcription termination factor-related (IPR003690);NIAS_FLcDNA=J065113C05;TENOR=Os06t0224650-01;KEGG=Os06t0224650-01
Chr06	irgsp1_rep	five_prime_UTR	6465196	6465270	.	-	.	Parent=Os06t0224650-01
Chr06	irgsp1_rep	CDS	6463975	6465195	.	-	0	Parent=Os06t0224650-01
Chr06	irgsp1_rep	three_prime_UTR	6463494	6463974	.	-	.	Parent=Os06t0224650-01
Chr06	irgsp1_rep	mRNA	6468332	6469065	.	-	.	ID=Os06t0224775-00;Name=Os06t0224775-00;Locus_id=Os06g0224775;Note=Conserved hypothetical protein.;Transcript_evidence=EU970125 (DDBJ);ORF_evidence=B8AWR1 (UniProt);TENOR=Os06t0224775-00
Chr06	irgsp1_rep	CDS	6468475	6469065	.	-	0	Parent=Os06t0224775-00
Chr06	irgsp1_rep	three_prime_UTR	6468332	6468474	.	-	.	Parent=Os06t0224775-00
Chr06	irgsp1_rep	mRNA	6472363	6473672	.	-	.	ID=Os06t0224900-01;Name=Os06t0224900-01;Locus_id=Os06g0224900;Note=Mitochodrial transcription termination factor-related family protein.;Transcript_evidence=AK105790 (DDBJ%2C Best hit);ORF_evidence=A2YAV9 (UniProt);InterPro=Mitochodrial transcription termination factor-related (IPR003690);NIAS_FLcDNA=001-202-H05;Expression=AK105790;TENOR=Os06t0224900-01;KEGG=Os06t0224900-01
Chr06	irgsp1_rep	five_prime_UTR	6473600	6473672	.	-	.	Parent=Os06t0224900-01
Chr06	irgsp1_rep	CDS	6472463	6473599	.	-	0	Parent=Os06t0224900-01
Chr06	irgsp1_rep	three_prime_UTR	6472363	6472462	.	-	.	Parent=Os06t0224900-01
Chr06	irgsp1_rep	mRNA	6472173	6473641	.	-	.	ID=Os06t0224900-02;Name=Os06t0224900-02;Locus_id=Os06g0224900;Note=Mitochodrial transcription termination factor-related family protein.;Transcript_evidence=AK065678 (DDBJ%2C Best hit);ORF_evidence=A2YAV9 (UniProt);InterPro=Mitochodrial transcription termination factor-related (IPR003690);NIAS_FLcDNA=J013037F24;Expression=AK065678;TENOR=Os06t0224900-02;KEGG=Os06t0224900-02
Chr06	irgsp1_rep	five_prime_UTR	6473600	6473641	.	-	.	Parent=Os06t0224900-02
Chr06	irgsp1_rep	CDS	6472463	6473599	.	-	0	Parent=Os06t0224900-02
Chr06	irgsp1_rep	three_prime_UTR	6472173	6472462	.	-	.	Parent=Os06t0224900-02
Chr06	irgsp1_rep	mRNA	6475161	6479028	.	+	.	ID=Os06t0225000-00;Name=Os06t0225000-00;Locus_id=Os06g0225000;Oryzabase Gene Symbol Synonym(s)=OsSAR1%2C SAR1%2C OsARL1c%2C ARL1c%2C OsSar1d%2C Sar1d;Oryzabase Gene Name Synonym(s)=SAR1B-like gene%2C secretion-associated Ras-superfamily protein 1%2C ARF-like protein 1c%2C "secretion-associated%2C Ras-related protein1d";Note=Similar to NTGB3 (Fragment).;Transcript_evidence=AY620416 (DDBJ%2C Best hit);ORF_evidence=B4FPT6 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: small GTPase mediated signal transduction (GO:0007264),Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C SAR1-type (IPR006687),Small GTPase superfamily%2C ARF/SAR type (IPR006689),Small GTPase superfamily%2C ARF type (IPR024156);Oryzabase=10087;Expression=AY620416;TENOR=Os06t0225000-00;KEGG=Os06t0225000-00
Chr06	irgsp1_rep	five_prime_UTR	6475161	6475209	.	+	.	Parent=Os06t0225000-00
Chr06	irgsp1_rep	CDS	6475210	6475341	.	+	0	Parent=Os06t0225000-00
Chr06	irgsp1_rep	CDS	6475744	6475875	.	+	0	Parent=Os06t0225000-00
Chr06	irgsp1_rep	CDS	6478639	6478959	.	+	0	Parent=Os06t0225000-00
Chr06	irgsp1_rep	three_prime_UTR	6478960	6479028	.	+	.	Parent=Os06t0225000-00
Chr06	irgsp1_rep	mRNA	6479283	6480980	.	-	.	ID=Os06t0225100-01;Name=Os06t0225100-01;Locus_id=Os06g0225100;Note=Mitochodrial transcription termination factor-related family protein.;Transcript_evidence=AK071845 (DDBJ%2C Best hit);ORF_evidence=B8B482 (UniProt);InterPro=Mitochodrial transcription termination factor-related (IPR003690);NIAS_FLcDNA=J023118A09;Expression=AK071845;TENOR=Os06t0225100-01;KEGG=Os06t0225100-01
Chr06	irgsp1_rep	five_prime_UTR	6480823	6480980	.	-	.	Parent=Os06t0225100-01
Chr06	irgsp1_rep	CDS	6479608	6480822	.	-	0	Parent=Os06t0225100-01
Chr06	irgsp1_rep	three_prime_UTR	6479283	6479607	.	-	.	Parent=Os06t0225100-01
Chr06	irgsp1_rep	mRNA	6482378	6483751	.	+	.	ID=Os06t0225200-01;Name=Os06t0225200-01;Locus_id=Os06g0225200;Note=Mitochodrial transcription termination factor-related family protein.;Transcript_evidence=AK104692 (DDBJ%2C Best hit),AK067095 (DDBJ%2C Best hit);ORF_evidence=A2YAW2 (UniProt);InterPro=Mitochodrial transcription termination factor-related (IPR003690);NIAS_FLcDNA=001-036-G12,J013096A05;Expression=AK104692;TENOR=Os06t0225200-01;KEGG=Os06t0225200-01
Chr06	irgsp1_rep	five_prime_UTR	6482378	6482421	.	+	.	Parent=Os06t0225200-01
Chr06	irgsp1_rep	CDS	6482422	6483603	.	+	0	Parent=Os06t0225200-01
Chr06	irgsp1_rep	three_prime_UTR	6483604	6483751	.	+	.	Parent=Os06t0225200-01
Chr06	irgsp1_rep	mRNA	6484242	6488553	.	-	.	ID=Os06t0225300-01;Name=Os06t0225300-01;Locus_id=Os06g0225300;Oryzabase Gene Symbol Synonym(s)=OsSERK3%2C OsSERL6%2C OsBI-SERK1%2C OsBAK1-3;Oryzabase Gene Name Synonym(s)=somatic embryogenesis receptor-like kinase 3%2C somatic embryogenesis receptor kinase 3%2C SERK-like gene 6%2C bri1-associated receptor kinase 1 (BAK1) homologue 3%2C BRASSINOSTEROID INSENSITIVE1-ASSOCIATED RECEPTOR KINASE1;Note=Similar to SERK1 (Fragment).;Transcript_evidence=AK100258 (DDBJ%2C Best hit);ORF_evidence=E2J573 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023062B01;Oryzabase=13022;Expression=AK100258;TENOR=Os06t0225300-01;KEGG=Os06t0225300-01
Chr06	irgsp1_rep	five_prime_UTR	6488131	6488553	.	-	.	Parent=Os06t0225300-01
Chr06	irgsp1_rep	CDS	6488052	6488130	.	-	0	Parent=Os06t0225300-01
Chr06	irgsp1_rep	CDS	6487797	6487929	.	-	2	Parent=Os06t0225300-01
Chr06	irgsp1_rep	CDS	6487641	6487712	.	-	1	Parent=Os06t0225300-01
Chr06	irgsp1_rep	CDS	6487115	6487258	.	-	1	Parent=Os06t0225300-01
Chr06	irgsp1_rep	CDS	6486911	6486982	.	-	1	Parent=Os06t0225300-01
Chr06	irgsp1_rep	CDS	6486768	6486839	.	-	1	Parent=Os06t0225300-01
Chr06	irgsp1_rep	CDS	6486609	6486685	.	-	1	Parent=Os06t0225300-01
Chr06	irgsp1_rep	CDS	6486175	6486312	.	-	2	Parent=Os06t0225300-01
Chr06	irgsp1_rep	CDS	6485756	6486097	.	-	2	Parent=Os06t0225300-01
Chr06	irgsp1_rep	CDS	6485229	6485623	.	-	2	Parent=Os06t0225300-01
Chr06	irgsp1_rep	CDS	6484405	6484731	.	-	0	Parent=Os06t0225300-01
Chr06	irgsp1_rep	three_prime_UTR	6484242	6484404	.	-	.	Parent=Os06t0225300-01
Chr06	irgsp1_rep	mRNA	6484167	6488215	.	-	.	ID=Os06t0225300-02;Name=Os06t0225300-02;Locus_id=Os06g0225300;Oryzabase Gene Symbol Synonym(s)=OsSERK3%2C OsSERL6%2C OsBI-SERK1%2C OsBAK1-3;Oryzabase Gene Name Synonym(s)=somatic embryogenesis receptor-like kinase 3%2C somatic embryogenesis receptor kinase 3%2C SERK-like gene 6%2C bri1-associated receptor kinase 1 (BAK1) homologue 3%2C BRASSINOSTEROID INSENSITIVE1-ASSOCIATED RECEPTOR KINASE1;Note=Similar to SERK1 (Fragment).;Transcript_evidence=AK065224 (DDBJ%2C Best hit);ORF_evidence=E2J573 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013002G23;Oryzabase=13022;Expression=AK065224;TENOR=Os06t0225300-02;KEGG=Os06t0225300-02
Chr06	irgsp1_rep	five_prime_UTR	6488131	6488215	.	-	.	Parent=Os06t0225300-02
Chr06	irgsp1_rep	CDS	6488052	6488130	.	-	0	Parent=Os06t0225300-02
Chr06	irgsp1_rep	CDS	6487797	6487929	.	-	2	Parent=Os06t0225300-02
Chr06	irgsp1_rep	CDS	6487641	6487712	.	-	1	Parent=Os06t0225300-02
Chr06	irgsp1_rep	CDS	6487115	6487258	.	-	1	Parent=Os06t0225300-02
Chr06	irgsp1_rep	CDS	6486911	6486982	.	-	1	Parent=Os06t0225300-02
Chr06	irgsp1_rep	CDS	6486768	6486839	.	-	1	Parent=Os06t0225300-02
Chr06	irgsp1_rep	CDS	6486609	6486685	.	-	1	Parent=Os06t0225300-02
Chr06	irgsp1_rep	CDS	6486175	6486312	.	-	2	Parent=Os06t0225300-02
Chr06	irgsp1_rep	CDS	6485756	6486097	.	-	2	Parent=Os06t0225300-02
Chr06	irgsp1_rep	CDS	6485229	6485623	.	-	2	Parent=Os06t0225300-02
Chr06	irgsp1_rep	CDS	6484405	6484731	.	-	0	Parent=Os06t0225300-02
Chr06	irgsp1_rep	three_prime_UTR	6484167	6484404	.	-	.	Parent=Os06t0225300-02
Chr06	irgsp1_rep	mRNA	6488914	6489210	.	+	.	ID=Os06t0225350-00;Name=Os06t0225350-00;Locus_id=Os06g0225350;Note=Hypothetical conserved gene.;Transcript_evidence=EU942158 (DDBJ);ORF_evidence=B6TW49 (UniProt);TENOR=Os06t0225350-00;KEGG=Os06t0225350-00
Chr06	irgsp1_rep	five_prime_UTR	6488914	6488964	.	+	.	Parent=Os06t0225350-00
Chr06	irgsp1_rep	CDS	6488965	6489210	.	+	0	Parent=Os06t0225350-00
Chr06	irgsp1_rep	mRNA	6490968	6491807	.	-	.	ID=Os06t0225400-01;Name=Os06t0225400-01;Locus_id=Os06g0225400;Note=Conserved hypothetical protein.;Transcript_evidence=AK108638 (DDBJ%2C Best hit);ORF_evidence=B8B484 (UniProt);NIAS_FLcDNA=002-147-H06;Expression=AK108638;TENOR=Os06t0225400-01;KEGG=Os06t0225400-01
Chr06	irgsp1_rep	five_prime_UTR	6491735	6491807	.	-	.	Parent=Os06t0225400-01
Chr06	irgsp1_rep	CDS	6491324	6491734	.	-	0	Parent=Os06t0225400-01
Chr06	irgsp1_rep	three_prime_UTR	6490968	6491323	.	-	.	Parent=Os06t0225400-01
Chr06	irgsp1_rep	mRNA	6489414	6491711	.	-	.	ID=Os06t0225400-02;Name=Os06t0225400-02;Locus_id=Os06g0225400;Note=Conserved hypothetical protein.;Transcript_evidence=AK109268 (DDBJ%2C Best hit);ORF_evidence=B8B484 (UniProt);NIAS_FLcDNA=002-188-A03;Expression=AK109268;TENOR=Os06t0225400-02;KEGG=Os06t0225400-02
Chr06	irgsp1_rep	five_prime_UTR	6491675	6491711	.	-	.	Parent=Os06t0225400-02
Chr06	irgsp1_rep	CDS	6491399	6491674	.	-	0	Parent=Os06t0225400-02
Chr06	irgsp1_rep	CDS	6490459	6490509	.	-	0	Parent=Os06t0225400-02
Chr06	irgsp1_rep	CDS	6490253	6490386	.	-	0	Parent=Os06t0225400-02
Chr06	irgsp1_rep	CDS	6489869	6489960	.	-	1	Parent=Os06t0225400-02
Chr06	irgsp1_rep	CDS	6489578	6489762	.	-	2	Parent=Os06t0225400-02
Chr06	irgsp1_rep	three_prime_UTR	6489414	6489577	.	-	.	Parent=Os06t0225400-02
Chr06	irgsp1_rep	mRNA	6492817	6493820	.	-	.	ID=Os06t0225600-01;Name=Os06t0225600-01;Locus_id=Os06g0225600;Note=Conserved hypothetical protein.;Transcript_evidence=AK109260 (DDBJ%2C Best hit);ORF_evidence=B8B485 (UniProt);NIAS_FLcDNA=002-185-A12;Expression=AK109260;TENOR=Os06t0225600-01;KEGG=Os06t0225600-01
Chr06	irgsp1_rep	five_prime_UTR	6493665	6493820	.	-	.	Parent=Os06t0225600-01
Chr06	irgsp1_rep	CDS	6493601	6493664	.	-	0	Parent=Os06t0225600-01
Chr06	irgsp1_rep	CDS	6492887	6493485	.	-	2	Parent=Os06t0225600-01
Chr06	irgsp1_rep	three_prime_UTR	6492817	6492886	.	-	.	Parent=Os06t0225600-01
Chr06	irgsp1_rep	mRNA	6495002	6497904	.	-	.	ID=Os06t0225800-01;Name=Os06t0225800-01;Locus_id=Os06g0225800;Oryzabase Gene Symbol Synonym(s)=OsSK2%2C SK2;Oryzabase Gene Name Synonym(s)=Shikimate kinase 2;Note=Shikimate kinase domain containing protein.;Transcript_evidence=AK109730 (DDBJ%2C Best hit);ORF_evidence=Q5NTH4 (UniProt);GO=Molecular Function: shikimate kinase activity (GO:0004765),Molecular Function: ATP binding (GO:0005524);InterPro=Shikimate kinase (IPR000623),Shikimate kinase%2C conserved site (IPR023000);NIAS_FLcDNA=002-146-B12;Oryzabase=11364;Expression=AK109730;TENOR=Os06t0225800-01;KEGG=Os06t0225800-01 (EC:2.7.1.71)
Chr06	irgsp1_rep	five_prime_UTR	6496993	6497904	.	-	.	Parent=Os06t0225800-01
Chr06	irgsp1_rep	CDS	6496876	6496992	.	-	0	Parent=Os06t0225800-01
Chr06	irgsp1_rep	CDS	6496698	6496752	.	-	0	Parent=Os06t0225800-01
Chr06	irgsp1_rep	CDS	6496419	6496579	.	-	2	Parent=Os06t0225800-01
Chr06	irgsp1_rep	CDS	6496170	6496252	.	-	0	Parent=Os06t0225800-01
Chr06	irgsp1_rep	CDS	6495947	6496076	.	-	1	Parent=Os06t0225800-01
Chr06	irgsp1_rep	CDS	6495644	6495722	.	-	0	Parent=Os06t0225800-01
Chr06	irgsp1_rep	CDS	6495438	6495502	.	-	2	Parent=Os06t0225800-01
Chr06	irgsp1_rep	CDS	6495212	6495316	.	-	0	Parent=Os06t0225800-01
Chr06	irgsp1_rep	three_prime_UTR	6495002	6495211	.	-	.	Parent=Os06t0225800-01
Chr06	irgsp1_rep	mRNA	6503743	6507744	.	-	.	ID=Os06t0225900-01;Name=Os06t0225900-01;Locus_id=Os06g0225900;Note=Similar to ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding.;Transcript_evidence=AK058549 (DDBJ%2C Best hit);ORF_evidence=NP_188608.3 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);NIAS_FLcDNA=001-017-C07;TENOR=Os06t0225900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	6507744	6507744	.	-	.	Parent=Os06t0225900-01
Chr06	irgsp1_rep	CDS	6507661	6507743	.	-	0	Parent=Os06t0225900-01
Chr06	irgsp1_rep	CDS	6507514	6507583	.	-	1	Parent=Os06t0225900-01
Chr06	irgsp1_rep	CDS	6507226	6507402	.	-	0	Parent=Os06t0225900-01
Chr06	irgsp1_rep	CDS	6505735	6505857	.	-	0	Parent=Os06t0225900-01
Chr06	irgsp1_rep	CDS	6505226	6505309	.	-	0	Parent=Os06t0225900-01
Chr06	irgsp1_rep	CDS	6504920	6505104	.	-	0	Parent=Os06t0225900-01
Chr06	irgsp1_rep	CDS	6504695	6504833	.	-	1	Parent=Os06t0225900-01
Chr06	irgsp1_rep	CDS	6504527	6504583	.	-	0	Parent=Os06t0225900-01
Chr06	irgsp1_rep	CDS	6504308	6504379	.	-	0	Parent=Os06t0225900-01
Chr06	irgsp1_rep	CDS	6504104	6504217	.	-	0	Parent=Os06t0225900-01
Chr06	irgsp1_rep	three_prime_UTR	6503743	6504103	.	-	.	Parent=Os06t0225900-01
Chr06	irgsp1_rep	mRNA	6515579	6519172	.	+	.	ID=Os06t0226000-01;Name=Os06t0226000-01;Locus_id=Os06g0226000;Note=Similar to Transposase (Fragment).;Transcript_evidence=AK121923 (DDBJ%2C Best hit);ORF_evidence=B9FSA9 (UniProt);GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Putative harbinger transposase-derived nuclease (IPR006912);NIAS_FLcDNA=J033106F12;Expression=AK121923;TENOR=Os06t0226000-01;KEGG=Os06t0226000-01
Chr06	irgsp1_rep	five_prime_UTR	6515579	6515668	.	+	.	Parent=Os06t0226000-01
Chr06	irgsp1_rep	five_prime_UTR	6515742	6516999	.	+	.	Parent=Os06t0226000-01
Chr06	irgsp1_rep	CDS	6517000	6517225	.	+	0	Parent=Os06t0226000-01
Chr06	irgsp1_rep	CDS	6517315	6517766	.	+	2	Parent=Os06t0226000-01
Chr06	irgsp1_rep	three_prime_UTR	6517767	6518172	.	+	.	Parent=Os06t0226000-01
Chr06	irgsp1_rep	three_prime_UTR	6518263	6519172	.	+	.	Parent=Os06t0226000-01
Chr06	irgsp1_rep	mRNA	6516789	6519177	.	+	.	ID=Os06t0226000-02;Name=Os06t0226000-02;Locus_id=Os06g0226000;Note=Conserved hypothetical protein.;Transcript_evidence=AK063771 (DDBJ%2C Best hit);ORF_evidence=B9FSB0 (UniProt);NIAS_FLcDNA=001-121-B12;TENOR=Os06t0226000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	6516789	6516902	.	+	.	Parent=Os06t0226000-02
Chr06	irgsp1_rep	five_prime_UTR	6517000	6517225	.	+	.	Parent=Os06t0226000-02
Chr06	irgsp1_rep	five_prime_UTR	6517315	6517830	.	+	.	Parent=Os06t0226000-02
Chr06	irgsp1_rep	CDS	6517831	6518172	.	+	0	Parent=Os06t0226000-02
Chr06	irgsp1_rep	CDS	6518263	6518631	.	+	0	Parent=Os06t0226000-02
Chr06	irgsp1_rep	three_prime_UTR	6518632	6519177	.	+	.	Parent=Os06t0226000-02
Chr06	irgsp1_rep	mRNA	6522344	6523338	.	+	.	ID=Os06t0226050-00;Name=Os06t0226050-00;Locus_id=Os06g0226050;Note=Similar to Salt-stress induced protein (Salt protein).;Transcript_evidence=ab initio prediction;ORF_evidence=A2WPN7 (UniProt);InterPro=Mannose-binding lectin (IPR001229);TENOR=Os06t0226050-00;KEGG=Os06t0226050-00
Chr06	irgsp1_rep	CDS	6522344	6522544	.	+	0	Parent=Os06t0226050-00
Chr06	irgsp1_rep	CDS	6523102	6523338	.	+	0	Parent=Os06t0226050-00
Chr06	irgsp1_rep	mRNA	6534746	6535895	.	-	.	ID=Os06t0226083-00;Name=Os06t0226083-00;Locus_id=Os06g0226083;Note=Hypothetical protein.;Transcript_evidence=EU974948 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0226083-00
Chr06	irgsp1_rep	five_prime_UTR	6535447	6535895	.	-	.	Parent=Os06t0226083-00
Chr06	irgsp1_rep	CDS	6535054	6535446	.	-	0	Parent=Os06t0226083-00
Chr06	irgsp1_rep	three_prime_UTR	6534746	6535053	.	-	.	Parent=Os06t0226083-00
Chr06	irgsp1_rep	mRNA	6534746	6535897	.	+	.	ID=Os06t0226100-00;Name=Os06t0226100-00;Locus_id=Os06g0226100;Oryzabase Gene Symbol Synonym(s)=OsGRL13;Oryzabase Gene Name Synonym(s)=GRX-like protein 13%2C glutaredoxin-like protein 13;Note=Glutaredoxin domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001057202.2 (RefSeq);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin (IPR002109),Thioredoxin-like fold (IPR012336);Oryzabase=13603;TENOR=Os06t0226100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	6534746	6535897	.	+	0	Parent=Os06t0226100-00
Chr06	irgsp1_rep	mRNA	6556697	6557748	.	+	.	ID=Os06t0226500-01;Name=Os06t0226500-01;Locus_id=Os06g0226500;RAP-DB Gene Symbol Synonym(s)=BU1%2C ILI4%2C OsBU1;RAP-DB Gene Name Synonym(s)=BRASSINOSTEROID UPREGULATED 1%2C BRASSINOSTEROID UPREGULATED1%2C Increased Leaf Inclination4%2C BR upregulated 1;CGSNL Gene Symbol=BU1;CGSNL Gene Name=BRASSINOSTEROID UPREGULATED 1;Oryzabase Gene Symbol Synonym(s)=ILI4%2C OsILI4%2C OsBU1%2C BU1/ILI4%2C OsbHLH172%2C bHLH172;Oryzabase Gene Name Synonym(s)=BRASSINOSTEROID UPREGULATED1%2C Increased Leaf Inclination4%2C BR upregulated 1%2C basic helix-loop-helix protein 172;Note=Helix-loop-helix protein%2C Brassinosteroid signaling;Transcript_evidence=AK071601 (Genbank);ORF_evidence=Q0DDF6 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J023102C01;Manual Curation=October 9%2C 2009;Literature_PMID=19648232;Oryzabase=8783;Expression=AK071601;TENOR=Os06t0226500-01;KEGG=Os06t0226500-01
Chr06	irgsp1_rep	five_prime_UTR	6556697	6556801	.	+	.	Parent=Os06t0226500-01
Chr06	irgsp1_rep	CDS	6556802	6556912	.	+	0	Parent=Os06t0226500-01
Chr06	irgsp1_rep	CDS	6557167	6557319	.	+	0	Parent=Os06t0226500-01
Chr06	irgsp1_rep	three_prime_UTR	6557320	6557748	.	+	.	Parent=Os06t0226500-01
Chr06	irgsp1_rep	mRNA	6559805	6563361	.	-	.	ID=Os06t0226600-01;Name=Os06t0226600-01;Locus_id=Os06g0226600;Note=TB2/DP1 and HVA22 related protein family protein.;Transcript_evidence=AK102752 (DDBJ%2C Best hit);ORF_evidence=B6UCA0 (UniProt);InterPro=TB2/DP1/HVA22-related protein (IPR004345);NIAS_FLcDNA=J033106M05;Expression=AK102752;TENOR=Os06t0226600-01;KEGG=Os06t0226600-01
Chr06	irgsp1_rep	five_prime_UTR	6563193	6563361	.	-	.	Parent=Os06t0226600-01
Chr06	irgsp1_rep	CDS	6563137	6563192	.	-	0	Parent=Os06t0226600-01
Chr06	irgsp1_rep	CDS	6561684	6561710	.	-	1	Parent=Os06t0226600-01
Chr06	irgsp1_rep	CDS	6561462	6561584	.	-	1	Parent=Os06t0226600-01
Chr06	irgsp1_rep	CDS	6560920	6561160	.	-	1	Parent=Os06t0226600-01
Chr06	irgsp1_rep	CDS	6560239	6560373	.	-	0	Parent=Os06t0226600-01
Chr06	irgsp1_rep	three_prime_UTR	6560205	6560238	.	-	.	Parent=Os06t0226600-01
Chr06	irgsp1_rep	three_prime_UTR	6559805	6560102	.	-	.	Parent=Os06t0226600-01
Chr06	irgsp1_rep	mRNA	6559760	6563305	.	-	.	ID=Os06t0226600-02;Name=Os06t0226600-02;Locus_id=Os06g0226600;Note=TB2/DP1 and HVA22 related protein family protein.;Transcript_evidence=AK061806 (DDBJ%2C Best hit);ORF_evidence=B6UCA0 (UniProt);InterPro=TB2/DP1/HVA22-related protein (IPR004345);NIAS_FLcDNA=001-040-A03;Expression=AK061806;TENOR=Os06t0226600-02;KEGG=Os06t0226600-02
Chr06	irgsp1_rep	five_prime_UTR	6563193	6563305	.	-	.	Parent=Os06t0226600-02
Chr06	irgsp1_rep	CDS	6563137	6563192	.	-	0	Parent=Os06t0226600-02
Chr06	irgsp1_rep	CDS	6561684	6561710	.	-	1	Parent=Os06t0226600-02
Chr06	irgsp1_rep	CDS	6561462	6561584	.	-	1	Parent=Os06t0226600-02
Chr06	irgsp1_rep	CDS	6560920	6561160	.	-	1	Parent=Os06t0226600-02
Chr06	irgsp1_rep	CDS	6560239	6560373	.	-	0	Parent=Os06t0226600-02
Chr06	irgsp1_rep	three_prime_UTR	6560205	6560238	.	-	.	Parent=Os06t0226600-02
Chr06	irgsp1_rep	three_prime_UTR	6559760	6560102	.	-	.	Parent=Os06t0226600-02
Chr06	irgsp1_rep	mRNA	6571018	6572598	.	+	.	ID=Os06t0226700-01;Name=Os06t0226700-01;Locus_id=Os06g0226700;RAP-DB Gene Symbol Synonym(s)=OsTCP19;RAP-DB Gene Name Synonym(s)="Teosinte branched1%2C Cycloidea%2C Proliferating cell factor (TCP)-domain protein 19";Oryzabase Gene Symbol Synonym(s)=OsTCP19%2C TCP19;Oryzabase Gene Name Synonym(s)=TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 19%2C "Teosinte branched1%2C Cycloidea%2C Proliferating cell factor (TCP)-domain protein 19"%2C TCP-domain protein 19;Note=Class-I TCP transcription factor%2C Water-deficit and salt stress response;Transcript_evidence=AK064240;ORF_evidence=Q67WL3;InterPro=Transcription factor TCP subgroup (IPR017887);NIAS_FLcDNA=002-105-B01;Manual Curation=June 9%2C 2020;Literature_PMID=25925167;Oryzabase=12384;Expression=AK064240;TENOR=Os06t0226700-01;KEGG=Os06t0226700-01;Subcellular location=nucleus (GO:0005634)
Chr06	irgsp1_rep	five_prime_UTR	6571018	6571313	.	+	.	Parent=Os06t0226700-01
Chr06	irgsp1_rep	CDS	6571314	6572477	.	+	0	Parent=Os06t0226700-01
Chr06	irgsp1_rep	three_prime_UTR	6572478	6572598	.	+	.	Parent=Os06t0226700-01
Chr06	irgsp1_rep	mRNA	6589823	6591619	.	-	.	ID=Os06t0226950-01;Name=Os06t0226950-01;Locus_id=Os06g0226950;CGSNL Gene Symbol=DSH1;CGSNL Gene Name=DIHYDROSPHINGOSINE C4 HYDROXYLASE 1;Oryzabase Gene Symbol Synonym(s)=OsDSH1;Oryzabase Gene Name Synonym(s)=dihydrosphingosine C4 hydroxylase 1;Note=Fatty acid hydroxylase domain containing protein.;Transcript_evidence=AK241878 (DDBJ%2C Best hit);ORF_evidence=B6TLG7 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Fatty acid hydroxylase (IPR006694);NIAS_FLcDNA=J065218I08;Oryzabase=7261;TENOR=Os06t0226950-01;KEGG=Os06t0226950-01 (EC:1.14.-.-)
Chr06	irgsp1_rep	five_prime_UTR	6591543	6591619	.	-	.	Parent=Os06t0226950-01
Chr06	irgsp1_rep	five_prime_UTR	6591365	6591405	.	-	.	Parent=Os06t0226950-01
Chr06	irgsp1_rep	CDS	6591137	6591364	.	-	0	Parent=Os06t0226950-01
Chr06	irgsp1_rep	CDS	6590030	6590596	.	-	0	Parent=Os06t0226950-01
Chr06	irgsp1_rep	three_prime_UTR	6589823	6590029	.	-	.	Parent=Os06t0226950-01
Chr06	irgsp1_rep	mRNA	6596353	6602476	.	-	.	ID=Os06t0227200-01;Name=Os06t0227200-01;Locus_id=Os06g0227200;Note=Kelch related domain containing protein.;Transcript_evidence=AK073517 (DDBJ%2C Best hit);ORF_evidence=B8B489 (UniProt);InterPro=Development/cell death domain (IPR013989);NIAS_FLcDNA=J033040I03;Expression=AK073517;TENOR=Os06t0227200-01;KEGG=Os06t0227200-01
Chr06	irgsp1_rep	five_prime_UTR	6602231	6602476	.	-	.	Parent=Os06t0227200-01
Chr06	irgsp1_rep	five_prime_UTR	6602047	6602056	.	-	.	Parent=Os06t0227200-01
Chr06	irgsp1_rep	CDS	6601075	6602046	.	-	0	Parent=Os06t0227200-01
Chr06	irgsp1_rep	CDS	6600046	6600162	.	-	0	Parent=Os06t0227200-01
Chr06	irgsp1_rep	CDS	6599496	6599944	.	-	0	Parent=Os06t0227200-01
Chr06	irgsp1_rep	CDS	6596617	6597193	.	-	1	Parent=Os06t0227200-01
Chr06	irgsp1_rep	three_prime_UTR	6596353	6596616	.	-	.	Parent=Os06t0227200-01
Chr06	irgsp1_rep	mRNA	6595964	6602429	.	-	.	ID=Os06t0227200-02;Name=Os06t0227200-02;Locus_id=Os06g0227200;Note=Kelch related domain containing protein.;Transcript_evidence=AK066970 (DDBJ%2C Best hit);ORF_evidence=B8B489 (UniProt);InterPro=Development/cell death domain (IPR013989);NIAS_FLcDNA=J013089B21;Expression=AK066970;TENOR=Os06t0227200-02;KEGG=Os06t0227200-02
Chr06	irgsp1_rep	five_prime_UTR	6602231	6602429	.	-	.	Parent=Os06t0227200-02
Chr06	irgsp1_rep	five_prime_UTR	6602047	6602056	.	-	.	Parent=Os06t0227200-02
Chr06	irgsp1_rep	CDS	6601075	6602046	.	-	0	Parent=Os06t0227200-02
Chr06	irgsp1_rep	CDS	6600046	6600162	.	-	0	Parent=Os06t0227200-02
Chr06	irgsp1_rep	CDS	6599496	6599944	.	-	0	Parent=Os06t0227200-02
Chr06	irgsp1_rep	CDS	6596617	6597193	.	-	1	Parent=Os06t0227200-02
Chr06	irgsp1_rep	three_prime_UTR	6595964	6596616	.	-	.	Parent=Os06t0227200-02
Chr06	irgsp1_rep	mRNA	6596368	6599732	.	-	.	ID=Os06t0227200-03;Name=Os06t0227200-03;Locus_id=Os06g0227200;Note=Hypothetical conserved gene.;Transcript_evidence=AK104849 (DDBJ%2C Best hit);ORF_evidence=B8B489 (UniProt);NIAS_FLcDNA=001-043-A01;Expression=AK104849;TENOR=Os06t0227200-03;KEGG=Os06t0227200-03
Chr06	irgsp1_rep	five_prime_UTR	6599732	6599732	.	-	.	Parent=Os06t0227200-03
Chr06	irgsp1_rep	CDS	6599496	6599731	.	-	0	Parent=Os06t0227200-03
Chr06	irgsp1_rep	CDS	6596617	6597193	.	-	1	Parent=Os06t0227200-03
Chr06	irgsp1_rep	three_prime_UTR	6596368	6596616	.	-	.	Parent=Os06t0227200-03
Chr06	irgsp1_rep	mRNA	6604299	6608424	.	-	.	ID=Os06t0227250-00;Name=Os06t0227250-00;Locus_id=Os06g0227250;CGSNL Gene Symbol=GAUT12;CGSNL Gene Name=GALACTURONOSYLTRANSFERASE 12;Oryzabase Gene Symbol Synonym(s)=OsGAUT12;Oryzabase Gene Name Synonym(s)=galacturonosyltransferase 12;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q67WK4 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 8 (IPR002495);Oryzabase=23253;TENOR=Os06t0227250-00;KEGG=Os06t0227250-00
Chr06	irgsp1_rep	CDS	6607189	6608424	.	-	0	Parent=Os06t0227250-00
Chr06	irgsp1_rep	CDS	6605902	6606128	.	-	0	Parent=Os06t0227250-00
Chr06	irgsp1_rep	CDS	6604299	6604359	.	-	1	Parent=Os06t0227250-00
Chr06	irgsp1_rep	mRNA	6605490	6605889	.	-	.	ID=Os06t0227300-01;Name=Os06t0227300-01;Locus_id=Os06g0227300;Note=Non-protein coding transcript.;Transcript_evidence=AK058385 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-014-H11;TENOR=Os06t0227300-01
Chr06	irgsp1_rep	exon	6605490	6605889	.	-	.	Parent=Os06t0227300-01
Chr06	irgsp1_rep	mRNA	6613117	6613440	.	+	.	ID=Os06t0227500-00;Name=Os06t0227500-00;Locus_id=Os06g0227500;CGSNL Gene Symbol=GSTU38;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 38;Oryzabase Gene Symbol Synonym(s)=OsGSTU38;Note=Similar to Glutathione S-transferase.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6QHA4 (UniProt);InterPro=Glutathione S-transferase%2C C-terminal-like (IPR010987);Oryzabase=9555;TENOR=Os06t0227500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	6613117	6613440	.	+	0	Parent=Os06t0227500-00
Chr06	irgsp1_rep	mRNA	6648404	6653002	.	-	.	ID=Os06t0228200-01;Name=Os06t0228200-01;Locus_id=Os06g0228200;RAP-DB Gene Symbol Synonym(s)=LSI6%2C Lsi6%2C OsNIP2%3B2%2C NIP2-2%2C OsLsi6;RAP-DB Gene Name Synonym(s)=LOW SILICON RICE 6%2C Low silicon rice 6%2C Aquaporin NIP2-2%2C NOD26-like intrinsic protein 2-2;CGSNL Gene Symbol=LSI6;CGSNL Gene Name=LOW SILICON RICE 6;Oryzabase Gene Symbol Synonym(s)=Lsi6%2C OsNIP2%3B2%2C NIP2-2%2C OsLsi6%2C OsNIP2.2/OsLsi6%2C OsNIP2.2%2C NIP2.2;Oryzabase Gene Name Synonym(s)=Low silicon rice 6%2C Aquaporin NIP2-2%2C NOD26-like intrinsic protein 2-2;Note=Aquaporin NIP III subfamily protein%2C Aquaporin%2C Silicon influx transporter%2C Water transport;Transcript_evidence=AB253627 (Genbank),AK112022 (Genbank),AK104037 (Genbank),AK072966 (Genbank);ORF_evidence=Q67WJ8 (UniProt),B3ITC1 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Major intrinsic protein%2C conserved site (IPR022357),Aquaporin-like (IPR023271);NIAS_FLcDNA=006-311-D01,J023144P06,001-021-F07;Manual Curation=September 8%2C 2009;Literature_PMID=18515498,19734433,16033806;Oryzabase=8320;TENOR=Os06t0228200-01
Chr06	irgsp1_rep	five_prime_UTR	6652837	6653002	.	-	.	Parent=Os06t0228200-01
Chr06	irgsp1_rep	CDS	6652678	6652836	.	-	0	Parent=Os06t0228200-01
Chr06	irgsp1_rep	CDS	6652295	6652519	.	-	0	Parent=Os06t0228200-01
Chr06	irgsp1_rep	CDS	6650007	6650201	.	-	0	Parent=Os06t0228200-01
Chr06	irgsp1_rep	CDS	6649833	6649894	.	-	0	Parent=Os06t0228200-01
Chr06	irgsp1_rep	CDS	6648865	6649120	.	-	1	Parent=Os06t0228200-01
Chr06	irgsp1_rep	three_prime_UTR	6648404	6648864	.	-	.	Parent=Os06t0228200-01
Chr06	irgsp1_rep	mRNA	6648430	6652996	.	-	.	ID=Os06t0228200-03;Name=Os06t0228200-03;Locus_id=Os06g0228200;CGSNL Gene Symbol=LSI6;CGSNL Gene Name=LOW SILICON RICE 6;Oryzabase Gene Symbol Synonym(s)=Lsi6%2C OsNIP2%3B2%2C NIP2-2%2C OsLsi6%2C OsNIP2.2/OsLsi6%2C OsNIP2.2%2C NIP2.2;Oryzabase Gene Name Synonym(s)=Low silicon rice 6%2C Aquaporin NIP2-2%2C NOD26-like intrinsic protein 2-2;Note=Similar to NOD26-like membrane integral protein.;Transcript_evidence=AK111839 (DDBJ%2C Best hit);ORF_evidence=B3ITC1 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Major intrinsic protein%2C conserved site (IPR022357),Aquaporin-like (IPR023271);NIAS_FLcDNA=J023140M01;Oryzabase=8320;TENOR=Os06t0228200-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	6652532	6652996	.	-	.	Parent=Os06t0228200-03
Chr06	irgsp1_rep	CDS	6652295	6652531	.	-	0	Parent=Os06t0228200-03
Chr06	irgsp1_rep	CDS	6650007	6650201	.	-	0	Parent=Os06t0228200-03
Chr06	irgsp1_rep	CDS	6649829	6649894	.	-	0	Parent=Os06t0228200-03
Chr06	irgsp1_rep	three_prime_UTR	6648430	6649828	.	-	.	Parent=Os06t0228200-03
Chr06	irgsp1_rep	mRNA	6657794	6658590	.	-	.	ID=Os06t0228350-01;Name=Os06t0228350-01;Locus_id=Os06g0228350;Note=Non-protein coding transcript.;Transcript_evidence=AK288492 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090040K02;TENOR=Os06t0228350-01
Chr06	irgsp1_rep	exon	6657794	6658590	.	-	.	Parent=Os06t0228350-01
Chr06	irgsp1_rep	mRNA	6678245	6680823	.	+	.	ID=Os06t0228500-01;Name=Os06t0228500-01;Locus_id=Os06g0228500;Oryzabase Gene Symbol Synonym(s)=OsATL12;Oryzabase Gene Name Synonym(s)=amino acid transporter-like 12;Note=Amino acid transporter%2C transmembrane domain containing protein.;Transcript_evidence=AK107472 (DDBJ%2C Best hit);ORF_evidence=XP_002311301.1 (RefSeq);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=002-129-B05;Oryzabase=18529;Expression=AK107472;TENOR=Os06t0228500-01;KEGG=Os06t0228500-01
Chr06	irgsp1_rep	five_prime_UTR	6678245	6678273	.	+	.	Parent=Os06t0228500-01
Chr06	irgsp1_rep	CDS	6678274	6678349	.	+	0	Parent=Os06t0228500-01
Chr06	irgsp1_rep	CDS	6678805	6679418	.	+	2	Parent=Os06t0228500-01
Chr06	irgsp1_rep	CDS	6680110	6680661	.	+	0	Parent=Os06t0228500-01
Chr06	irgsp1_rep	three_prime_UTR	6680662	6680823	.	+	.	Parent=Os06t0228500-01
Chr06	irgsp1_rep	mRNA	6682437	6685947	.	-	.	ID=Os06t0228600-01;Name=Os06t0228600-01;Locus_id=Os06g0228600;CGSNL Gene Symbol=AAP12C;CGSNL Gene Name=AMINO ACID PERMEASE 12C;Oryzabase Gene Symbol Synonym(s)=OsAAP12C%2C OsAAP2%2C AAP2;Oryzabase Gene Name Synonym(s)=amino acid permease 12C%2C amino acid permease 2%2C amino acid/auxin permease 2;Note=Similar to Amino acid carrier.;Transcript_evidence=AK106762 (DDBJ%2C Best hit);ORF_evidence=NP_001149517.1 (RefSeq);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=002-115-E07;Oryzabase=18487;Expression=AK106762;TENOR=Os06t0228600-01;KEGG=Os06t0228600-01
Chr06	irgsp1_rep	five_prime_UTR	6685820	6685947	.	-	.	Parent=Os06t0228600-01
Chr06	irgsp1_rep	CDS	6685696	6685819	.	-	0	Parent=Os06t0228600-01
Chr06	irgsp1_rep	CDS	6684430	6684666	.	-	2	Parent=Os06t0228600-01
Chr06	irgsp1_rep	CDS	6684223	6684316	.	-	2	Parent=Os06t0228600-01
Chr06	irgsp1_rep	CDS	6683896	6684113	.	-	1	Parent=Os06t0228600-01
Chr06	irgsp1_rep	CDS	6683414	6683553	.	-	2	Parent=Os06t0228600-01
Chr06	irgsp1_rep	CDS	6682580	6683221	.	-	0	Parent=Os06t0228600-01
Chr06	irgsp1_rep	three_prime_UTR	6682437	6682579	.	-	.	Parent=Os06t0228600-01
Chr06	irgsp1_rep	mRNA	6682637	6684667	.	+	.	ID=Os06t0228666-00;Name=Os06t0228666-00;Locus_id=Os06g0228666;Note=Hypothetical protein.;Transcript_evidence=tplb0036o08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0228666-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	6682637	6682736	.	+	.	Parent=Os06t0228666-00
Chr06	irgsp1_rep	CDS	6682737	6683000	.	+	0	Parent=Os06t0228666-00
Chr06	irgsp1_rep	three_prime_UTR	6683001	6683218	.	+	.	Parent=Os06t0228666-00
Chr06	irgsp1_rep	three_prime_UTR	6683410	6683546	.	+	.	Parent=Os06t0228666-00
Chr06	irgsp1_rep	three_prime_UTR	6683892	6684103	.	+	.	Parent=Os06t0228666-00
Chr06	irgsp1_rep	three_prime_UTR	6684206	6684278	.	+	.	Parent=Os06t0228666-00
Chr06	irgsp1_rep	three_prime_UTR	6684392	6684667	.	+	.	Parent=Os06t0228666-00
Chr06	irgsp1_rep	mRNA	6687892	6688087	.	-	.	ID=Os06t0228732-00;Name=Os06t0228732-00;Locus_id=Os06g0228732;Note=Non-protein coding transcript.;Transcript_evidence=EU955725 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0228732-00
Chr06	irgsp1_rep	exon	6687892	6688087	.	-	.	Parent=Os06t0228732-00
Chr06	irgsp1_rep	mRNA	6691064	6695063	.	-	.	ID=Os06t0228800-01;Name=Os06t0228800-01;Locus_id=Os06g0228800;CGSNL Gene Symbol=AAP10A;CGSNL Gene Name=AMINO ACID PERMEASE 10A;Oryzabase Gene Symbol Synonym(s)=OsAAP10A%2C OsAAP17%2C AAP17;Oryzabase Gene Name Synonym(s)=amino acid permease 10A%2C amino acid permease 17%2C amino acid/auxin permease 17;Note=Amino acid transporter%2C transmembrane domain containing protein.;Transcript_evidence=AK106814 (DDBJ%2C Best hit);ORF_evidence=NP_001147944.1 (RefSeq);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=002-116-D01;Oryzabase=18501;Expression=AK106814;TENOR=Os06t0228800-01;KEGG=Os06t0228800-01
Chr06	irgsp1_rep	five_prime_UTR	6695017	6695063	.	-	.	Parent=Os06t0228800-01
Chr06	irgsp1_rep	CDS	6694638	6695016	.	-	0	Parent=Os06t0228800-01
Chr06	irgsp1_rep	CDS	6692860	6692953	.	-	2	Parent=Os06t0228800-01
Chr06	irgsp1_rep	CDS	6692329	6692704	.	-	1	Parent=Os06t0228800-01
Chr06	irgsp1_rep	CDS	6691242	6691916	.	-	0	Parent=Os06t0228800-01
Chr06	irgsp1_rep	three_prime_UTR	6691064	6691241	.	-	.	Parent=Os06t0228800-01
Chr06	irgsp1_rep	mRNA	6691293	6694982	.	+	.	ID=Os06t0228825-00;Name=Os06t0228825-00;Locus_id=Os06g0228825;Note=Hypothetical protein.;Transcript_evidence=tplb0036o08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0228825-00
Chr06	irgsp1_rep	five_prime_UTR	6691293	6691915	.	+	.	Parent=Os06t0228825-00
Chr06	irgsp1_rep	five_prime_UTR	6692328	6692652	.	+	.	Parent=Os06t0228825-00
Chr06	irgsp1_rep	five_prime_UTR	6692843	6692922	.	+	.	Parent=Os06t0228825-00
Chr06	irgsp1_rep	CDS	6692923	6692937	.	+	0	Parent=Os06t0228825-00
Chr06	irgsp1_rep	CDS	6694624	6694923	.	+	0	Parent=Os06t0228825-00
Chr06	irgsp1_rep	three_prime_UTR	6694924	6694982	.	+	.	Parent=Os06t0228825-00
Chr06	irgsp1_rep	mRNA	6696558	6698609	.	+	.	ID=Os06t0228900-00;Name=Os06t0228900-00;Locus_id=Os06g0228900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK362024 (DDBJ);ORF_evidence=Q67WJ3 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os06t0228900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	6696558	6697091	.	+	0	Parent=Os06t0228900-00
Chr06	irgsp1_rep	CDS	6697419	6698609	.	+	0	Parent=Os06t0228900-00
Chr06	irgsp1_rep	mRNA	6699725	6700782	.	+	.	ID=Os06t0228950-00;Name=Os06t0228950-00;Locus_id=Os06g0228950;Note=Plant regulator RWP-RK domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FSB6 (UniProt);InterPro=Plant regulator RWP-RK (IPR003035);TENOR=Os06t0228950-00
Chr06	irgsp1_rep	CDS	6699725	6699747	.	+	0	Parent=Os06t0228950-00
Chr06	irgsp1_rep	CDS	6699887	6700023	.	+	1	Parent=Os06t0228950-00
Chr06	irgsp1_rep	CDS	6700144	6700484	.	+	2	Parent=Os06t0228950-00
Chr06	irgsp1_rep	CDS	6700585	6700782	.	+	0	Parent=Os06t0228950-00
Chr06	irgsp1_rep	mRNA	6701280	6701973	.	-	.	ID=Os06t0229000-01;Name=Os06t0229000-01;Locus_id=Os06g0229000;CGSNL Gene Symbol=FTSH6;Oryzabase Gene Symbol Synonym(s)=OsFtsH6%2C FtsH6;Note=Similar to FtsH protease (VAR2) (Zinc dependent protease).;Transcript_evidence=AK063733 (DDBJ%2C Best hit);ORF_evidence=Q67WJ2 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: ATP binding (GO:0005524);InterPro=Peptidase M41 (IPR000642);NIAS_FLcDNA=001-120-E10;Oryzabase=20455;Expression=AK063733;TENOR=Os06t0229000-01;KEGG=Os06t0229000-01 (EC:3.4.24.-)
Chr06	irgsp1_rep	CDS	6701407	6701973	.	-	0	Parent=Os06t0229000-01
Chr06	irgsp1_rep	three_prime_UTR	6701280	6701406	.	-	.	Parent=Os06t0229000-01
Chr06	irgsp1_rep	mRNA	6702956	6704431	.	-	.	ID=Os06t0229066-00;Name=Os06t0229066-00;Locus_id=Os06g0229066;Note=Similar to ATP-dependent zinc metalloprotease FTSH 6%2C chloroplastic.;Transcript_evidence=ab initio prediction;ORF_evidence=Q67WJ2 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: protein catabolic process (GO:0030163),Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=Peptidase M41 (IPR000642),ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960),Peptidase M41%2C FtsH (IPR005936),Twin-arginine translocation pathway%2C signal sequence (IPR006311);TENOR=Os06t0229066-00
Chr06	irgsp1_rep	CDS	6702956	6704431	.	-	0	Parent=Os06t0229066-00
Chr06	irgsp1_rep	mRNA	6716194	6721900	.	+	.	ID=Os06t0229200-01;Name=Os06t0229200-01;Locus_id=Os06g0229200;Note=Glycosyl transferase%2C family 31 protein.;Transcript_evidence=AK070606 (DDBJ%2C Best hit);ORF_evidence=XP_002890640.1 (RefSeq);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: sugar binding (GO:0005529),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Galectin%2C carbohydrate recognition domain (IPR001079),Glycosyl transferase%2C family 31 (IPR002659),Concanavalin A-like lectin/glucanase (IPR008985),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320);NIAS_FLcDNA=J023056D08;Expression=AK070606;TENOR=Os06t0229200-01;KEGG=Os06t0229200-01
Chr06	irgsp1_rep	five_prime_UTR	6716194	6716626	.	+	.	Parent=Os06t0229200-01
Chr06	irgsp1_rep	five_prime_UTR	6717784	6718065	.	+	.	Parent=Os06t0229200-01
Chr06	irgsp1_rep	CDS	6718066	6718834	.	+	0	Parent=Os06t0229200-01
Chr06	irgsp1_rep	CDS	6719172	6719407	.	+	2	Parent=Os06t0229200-01
Chr06	irgsp1_rep	CDS	6719606	6719887	.	+	0	Parent=Os06t0229200-01
Chr06	irgsp1_rep	CDS	6720294	6720422	.	+	0	Parent=Os06t0229200-01
Chr06	irgsp1_rep	CDS	6720499	6720678	.	+	0	Parent=Os06t0229200-01
Chr06	irgsp1_rep	CDS	6720902	6721009	.	+	0	Parent=Os06t0229200-01
Chr06	irgsp1_rep	CDS	6721194	6721403	.	+	0	Parent=Os06t0229200-01
Chr06	irgsp1_rep	three_prime_UTR	6721404	6721900	.	+	.	Parent=Os06t0229200-01
Chr06	irgsp1_rep	mRNA	6725343	6734351	.	+	.	ID=Os06t0229300-01;Name=Os06t0229300-01;Locus_id=Os06g0229300;Oryzabase Gene Symbol Synonym(s)=HAZ1;Note=Similar to Hox2b protein.;Transcript_evidence=AK121314 (DDBJ%2C Best hit),AK101428 (DDBJ%2C Best hit);ORF_evidence=Q8H990 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),Zinc finger%2C PHD-type (IPR001965),Homeodomain-like (IPR009057),Zinc finger%2C FYVE/PHD-type (IPR011011),Homeodomain-related (IPR012287),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-type%2C conserved site (IPR019786),Zinc finger%2C PHD-finger (IPR019787);NIAS_FLcDNA=J023113A13,J033038H23;Oryzabase=14529;Expression=AK121314;TENOR=Os06t0229300-01;KEGG=Os06t0229300-01
Chr06	irgsp1_rep	five_prime_UTR	6725343	6725617	.	+	.	Parent=Os06t0229300-01
Chr06	irgsp1_rep	five_prime_UTR	6727793	6727926	.	+	.	Parent=Os06t0229300-01
Chr06	irgsp1_rep	CDS	6727927	6728492	.	+	0	Parent=Os06t0229300-01
Chr06	irgsp1_rep	CDS	6728605	6728770	.	+	1	Parent=Os06t0229300-01
Chr06	irgsp1_rep	CDS	6728849	6728972	.	+	0	Parent=Os06t0229300-01
Chr06	irgsp1_rep	CDS	6729057	6729169	.	+	2	Parent=Os06t0229300-01
Chr06	irgsp1_rep	CDS	6729268	6729876	.	+	0	Parent=Os06t0229300-01
Chr06	irgsp1_rep	CDS	6732278	6732568	.	+	0	Parent=Os06t0229300-01
Chr06	irgsp1_rep	CDS	6733282	6733371	.	+	0	Parent=Os06t0229300-01
Chr06	irgsp1_rep	CDS	6733464	6733883	.	+	0	Parent=Os06t0229300-01
Chr06	irgsp1_rep	three_prime_UTR	6733884	6734351	.	+	.	Parent=Os06t0229300-01
Chr06	irgsp1_rep	mRNA	6736085	6737686	.	+	.	ID=Os06t0229400-00;Name=Os06t0229400-00;Locus_id=Os06g0229400;CGSNL Gene Symbol=GELP81;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 81;Oryzabase Gene Symbol Synonym(s)=OsGELP81;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 81;Note=Conserved hypothetical protein.;Transcript_evidence=BT063540 (DDBJ);ORF_evidence=XP_002514748.1 (RefSeq);Oryzabase=11031;TENOR=Os06t0229400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	6736085	6736526	.	+	0	Parent=Os06t0229400-00
Chr06	irgsp1_rep	CDS	6736941	6737686	.	+	2	Parent=Os06t0229400-00
Chr06	irgsp1_rep	mRNA	6748398	6753302	.	+	.	ID=Os06t0229800-01;Name=Os06t0229800-01;Locus_id=Os06g0229800;RAP-DB Gene Symbol Synonym(s)=ALK%2C alk%2C SSII-3%2C OsSSIIa%2C OsSSII-3%2C SSIIa%2C SSS2A%2C OsSSIIaChr6;RAP-DB Gene Name Synonym(s)=ALKALI DEGENERATION%2C alkali degeneration%2C "Soluble starch synthase 2-3%2C chloroplast precursor"%2C "Soluble starch synthase 2-3%2C chloroplast"%2C "Soluble starch synthase 2-3%2C chloroplastic/amyloplastic"%2C Soluble starch synthase II-3%2C Starch synthase IIa%2C soluble starch synthase IIa%2C Starch synthase-IIa;CGSNL Gene Symbol=ALK;CGSNL Gene Name=ALKALI DEGENERATION;Oryzabase Gene Symbol Synonym(s)=alk%2C SSII-3%2C OsSSIIa%2C OsSSII-3%2C SSIIa%2C SSS2A%2C OsSSIIaChr6%2C SS2a;Oryzabase Gene Name Synonym(s)=alkali degeneration%2C ALKALI DEGENERATION%2C "Soluble starch synthase 2-3%2C chloroplast precursor"%2C "Soluble starch synthase 2-3%2C chloroplast"%2C "Soluble starch synthase 2-3%2C chloroplastic/amyloplastic"%2C Soluble starch synthase II-3%2C Starch synthase IIa%2C soluble starch synthase IIa%2C Starch synthase-IIa%2C Starch synthase IIa;Note=Soluble starch synthase II-3%2C Endosperm starch synthesis%2C Determination of the type of amylopectin structure of starch grain;Transcript_evidence=AK101978,AB115915,AF419099;ORF_evidence=Q0DDE3;GO=Molecular Function: glycogen (starch) synthase activity (GO:0004373);InterPro=Bacterial/plant glycogen synthase (IPR011835),Starch synthase%2C catalytic domain (IPR013534);NIAS_FLcDNA=J033076P09;Manual Curation=July 7%2C 2016;Literature_PMID=21711449,16027975,14740212;Oryzabase=757;Expression=AK101978;TENOR=Os06t0229800-01;KEGG=Os06t0229800-01 (EC:2.4.1.21)
Chr06	irgsp1_rep	five_prime_UTR	6748398	6748560	.	+	.	Parent=Os06t0229800-01
Chr06	irgsp1_rep	CDS	6748561	6748890	.	+	0	Parent=Os06t0229800-01
Chr06	irgsp1_rep	CDS	6749020	6749688	.	+	0	Parent=Os06t0229800-01
Chr06	irgsp1_rep	CDS	6749788	6749856	.	+	0	Parent=Os06t0229800-01
Chr06	irgsp1_rep	CDS	6750546	6750623	.	+	0	Parent=Os06t0229800-01
Chr06	irgsp1_rep	CDS	6750706	6750816	.	+	0	Parent=Os06t0229800-01
Chr06	irgsp1_rep	CDS	6750922	6750966	.	+	0	Parent=Os06t0229800-01
Chr06	irgsp1_rep	CDS	6751383	6751556	.	+	0	Parent=Os06t0229800-01
Chr06	irgsp1_rep	CDS	6752024	6752980	.	+	0	Parent=Os06t0229800-01
Chr06	irgsp1_rep	three_prime_UTR	6752981	6753302	.	+	.	Parent=Os06t0229800-01
Chr06	irgsp1_rep	mRNA	6751939	6753229	.	-	.	ID=Os06t0229900-01;Name=Os06t0229900-01;Locus_id=Os06g0229900;Note=Similar to Starch synthase IIa (EC 2.4.1.21) (Fragment).;Transcript_evidence=AK106045 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-206-E05;Expression=AK106045;TENOR=Os06t0229900-01;KEGG=Os06t0229900-01 (EC:2.4.1.21)
Chr06	irgsp1_rep	five_prime_UTR	6752990	6753229	.	-	.	Parent=Os06t0229900-01
Chr06	irgsp1_rep	CDS	6751958	6752989	.	-	0	Parent=Os06t0229900-01
Chr06	irgsp1_rep	three_prime_UTR	6751939	6751957	.	-	.	Parent=Os06t0229900-01
Chr06	irgsp1_rep	mRNA	6754294	6755540	.	-	.	ID=Os06t0230000-01;Name=Os06t0230000-01;Locus_id=Os06g0230000;Note=Hypothetical conserved gene.;Transcript_evidence=AK241537 (DDBJ%2C Best hit);ORF_evidence=NP_001174674.1 (RefSeq);NIAS_FLcDNA=J065173J04;TENOR=Os06t0230000-01;KEGG=Os06t0230000-01
Chr06	irgsp1_rep	five_prime_UTR	6755164	6755540	.	-	.	Parent=Os06t0230000-01
Chr06	irgsp1_rep	five_prime_UTR	6755055	6755080	.	-	.	Parent=Os06t0230000-01
Chr06	irgsp1_rep	CDS	6754749	6755054	.	-	0	Parent=Os06t0230000-01
Chr06	irgsp1_rep	three_prime_UTR	6754294	6754748	.	-	.	Parent=Os06t0230000-01
Chr06	irgsp1_rep	mRNA	6757996	6762787	.	+	.	ID=Os06t0230100-00;Name=Os06t0230100-00;Locus_id=Os06g0230100;CGSNL Gene Symbol=CSLA3;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE A3;Oryzabase Gene Symbol Synonym(s)=OsCslA3%2C OsCSLA3;Note=Similar to Cellulose synthase-like A1.;Transcript_evidence=AK358114 (DDBJ);ORF_evidence=A3QT94 (UniProt);InterPro=Glycosyl transferase%2C family 2 (IPR001173);Oryzabase=13881;TENOR=Os06t0230100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	6757996	6758799	.	+	0	Parent=Os06t0230100-00
Chr06	irgsp1_rep	CDS	6760646	6760898	.	+	0	Parent=Os06t0230100-00
Chr06	irgsp1_rep	CDS	6761235	6761345	.	+	2	Parent=Os06t0230100-00
Chr06	irgsp1_rep	CDS	6761427	6761563	.	+	2	Parent=Os06t0230100-00
Chr06	irgsp1_rep	CDS	6761891	6762004	.	+	0	Parent=Os06t0230100-00
Chr06	irgsp1_rep	CDS	6762242	6762441	.	+	0	Parent=Os06t0230100-00
Chr06	irgsp1_rep	CDS	6762550	6762787	.	+	1	Parent=Os06t0230100-00
Chr06	irgsp1_rep	mRNA	6758306	6760806	.	-	.	ID=Os06t0230201-00;Name=Os06t0230201-00;Locus_id=Os06g0230201;Note=Hypothetical protein.;Transcript_evidence=BT086854 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0230201-00
Chr06	irgsp1_rep	five_prime_UTR	6760636	6760806	.	-	.	Parent=Os06t0230201-00
Chr06	irgsp1_rep	five_prime_UTR	6758760	6758789	.	-	.	Parent=Os06t0230201-00
Chr06	irgsp1_rep	CDS	6758707	6758759	.	-	0	Parent=Os06t0230201-00
Chr06	irgsp1_rep	CDS	6758401	6758572	.	-	1	Parent=Os06t0230201-00
Chr06	irgsp1_rep	three_prime_UTR	6758306	6758400	.	-	.	Parent=Os06t0230201-00
Chr06	irgsp1_rep	mRNA	6761857	6762678	.	-	.	ID=Os06t0230301-00;Name=Os06t0230301-00;Locus_id=Os06g0230301;Note=Non-protein coding transcript.;Transcript_evidence=EU946219 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0230301-00
Chr06	irgsp1_rep	exon	6762177	6762678	.	-	.	Parent=Os06t0230301-00
Chr06	irgsp1_rep	exon	6761857	6762008	.	-	.	Parent=Os06t0230301-00
Chr06	irgsp1_rep	mRNA	6766098	6770111	.	-	.	ID=Os06t0230400-00;Name=Os06t0230400-00;Locus_id=Os06g0230400;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=Q67X43 (UniProt);TENOR=Os06t0230400-00;KEGG=Os06t0230400-00
Chr06	irgsp1_rep	CDS	6770072	6770111	.	-	0	Parent=Os06t0230400-00
Chr06	irgsp1_rep	CDS	6769502	6769822	.	-	2	Parent=Os06t0230400-00
Chr06	irgsp1_rep	CDS	6769304	6769356	.	-	2	Parent=Os06t0230400-00
Chr06	irgsp1_rep	CDS	6767586	6767689	.	-	0	Parent=Os06t0230400-00
Chr06	irgsp1_rep	CDS	6766098	6766155	.	-	1	Parent=Os06t0230400-00
Chr06	irgsp1_rep	mRNA	6783375	6787538	.	+	.	ID=Os06t0230801-00;Name=Os06t0230801-00;Locus_id=Os06g0230801;Note=Hypothetical gene.;Transcript_evidence=CT836227 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os06t0230801-00;KEGG=Os06t0230801-00
Chr06	irgsp1_rep	five_prime_UTR	6783375	6783486	.	+	.	Parent=Os06t0230801-00
Chr06	irgsp1_rep	CDS	6783487	6783516	.	+	0	Parent=Os06t0230801-00
Chr06	irgsp1_rep	CDS	6787040	6787264	.	+	0	Parent=Os06t0230801-00
Chr06	irgsp1_rep	three_prime_UTR	6787265	6787538	.	+	.	Parent=Os06t0230801-00
Chr06	irgsp1_rep	mRNA	6788986	6790048	.	+	.	ID=Os06t0231050-00;Name=Os06t0231050-00;Locus_id=Os06g0231050;CGSNL Gene Symbol=CASP3;CGSNL Gene Name=CASPARIAN STRIP DOMAIN PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsCASP3;Oryzabase Gene Name Synonym(s)=Casparian strip domain protein 3;Note=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup domain containing protein.;Transcript_evidence=CT836221 (DDBJ%2C Best hit);ORF_evidence=C5Z7E3 (UniProt);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup (IPR006459),Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);Oryzabase=23337;TENOR=Os06t0231050-00;KEGG=Os06t0231050-00
Chr06	irgsp1_rep	five_prime_UTR	6788986	6789039	.	+	.	Parent=Os06t0231050-00
Chr06	irgsp1_rep	CDS	6789040	6789254	.	+	0	Parent=Os06t0231050-00
Chr06	irgsp1_rep	CDS	6789351	6789474	.	+	1	Parent=Os06t0231050-00
Chr06	irgsp1_rep	CDS	6789635	6789850	.	+	0	Parent=Os06t0231050-00
Chr06	irgsp1_rep	three_prime_UTR	6789851	6790048	.	+	.	Parent=Os06t0231050-00
Chr06	irgsp1_rep	mRNA	6790516	6792069	.	-	.	ID=Os06t0231100-00;Name=Os06t0231100-00;Locus_id=Os06g0231100;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=BT054912 (DDBJ);ORF_evidence=Q67X39 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os06t0231100-00
Chr06	irgsp1_rep	CDS	6790516	6792069	.	-	0	Parent=Os06t0231100-00
Chr06	irgsp1_rep	mRNA	6794151	6796570	.	+	.	ID=Os06t0231300-01;Name=Os06t0231300-01;Locus_id=Os06g0231300;Oryzabase Gene Symbol Synonym(s)=ROX3;Oryzabase Gene Name Synonym(s)=Regulator of XA21-3;Note=CS domain domain containing protein.;Transcript_evidence=AK073934 (DDBJ%2C Best hit);ORF_evidence=B6T728 (UniProt);InterPro=CS-like domain (IPR007052),HSP20-like chaperone (IPR008978),CS domain (IPR017447);NIAS_FLcDNA=J033076L21;Oryzabase=9790;Expression=AK073934;TENOR=Os06t0231300-01;KEGG=Os06t0231300-01
Chr06	irgsp1_rep	five_prime_UTR	6794151	6794253	.	+	.	Parent=Os06t0231300-01
Chr06	irgsp1_rep	CDS	6794254	6794668	.	+	0	Parent=Os06t0231300-01
Chr06	irgsp1_rep	CDS	6795385	6795557	.	+	2	Parent=Os06t0231300-01
Chr06	irgsp1_rep	CDS	6795684	6795732	.	+	0	Parent=Os06t0231300-01
Chr06	irgsp1_rep	CDS	6795837	6796003	.	+	2	Parent=Os06t0231300-01
Chr06	irgsp1_rep	CDS	6796102	6796185	.	+	0	Parent=Os06t0231300-01
Chr06	irgsp1_rep	CDS	6796280	6796318	.	+	0	Parent=Os06t0231300-01
Chr06	irgsp1_rep	three_prime_UTR	6796319	6796570	.	+	.	Parent=Os06t0231300-01
Chr06	irgsp1_rep	mRNA	6796590	6798352	.	+	.	ID=Os06t0231350-00;Name=Os06t0231350-00;Locus_id=Os06g0231350;Note=Hypothetical protein.;Transcript_evidence=tplb0021n11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0231350-00
Chr06	irgsp1_rep	five_prime_UTR	6796590	6796670	.	+	.	Parent=Os06t0231350-00
Chr06	irgsp1_rep	CDS	6796671	6797294	.	+	0	Parent=Os06t0231350-00
Chr06	irgsp1_rep	three_prime_UTR	6797295	6798352	.	+	.	Parent=Os06t0231350-00
Chr06	irgsp1_rep	mRNA	6796598	6798468	.	-	.	ID=Os06t0231400-01;Name=Os06t0231400-01;Locus_id=Os06g0231400;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK072084 (DDBJ%2C Best hit),AK120621 (DDBJ%2C Best hit);ORF_evidence=NP_001147320.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013116A15,J013152E17;Expression=AK072084;TENOR=Os06t0231400-01;KEGG=Os06t0231400-01
Chr06	irgsp1_rep	five_prime_UTR	6798441	6798468	.	-	.	Parent=Os06t0231400-01
Chr06	irgsp1_rep	CDS	6796632	6798440	.	-	0	Parent=Os06t0231400-01
Chr06	irgsp1_rep	three_prime_UTR	6796598	6796631	.	-	.	Parent=Os06t0231400-01
Chr06	irgsp1_rep	mRNA	6809574	6811873	.	-	.	ID=Os06t0231600-01;Name=Os06t0231600-01;Locus_id=Os06g0231600;Oryzabase Gene Symbol Synonym(s)=OsRFPH2-7;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPH2-7%2C RING-H2 protein 7;Note=Similar to RING-H2 finger protein ATL1Q.;Transcript_evidence=AK287491 (DDBJ%2C Best hit);ORF_evidence=B6SM04 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J043031C24;Oryzabase=11768;TENOR=Os06t0231600-01;KEGG=Os06t0231600-01
Chr06	irgsp1_rep	five_prime_UTR	6811728	6811873	.	-	.	Parent=Os06t0231600-01
Chr06	irgsp1_rep	CDS	6811601	6811727	.	-	0	Parent=Os06t0231600-01
Chr06	irgsp1_rep	CDS	6811110	6811288	.	-	2	Parent=Os06t0231600-01
Chr06	irgsp1_rep	CDS	6810729	6810812	.	-	0	Parent=Os06t0231600-01
Chr06	irgsp1_rep	CDS	6810320	6810487	.	-	0	Parent=Os06t0231600-01
Chr06	irgsp1_rep	CDS	6809843	6809965	.	-	0	Parent=Os06t0231600-01
Chr06	irgsp1_rep	three_prime_UTR	6809574	6809842	.	-	.	Parent=Os06t0231600-01
Chr06	irgsp1_rep	mRNA	6816406	6819804	.	-	.	ID=Os06t0232000-01;Name=Os06t0232000-01;Locus_id=Os06g0232000;Note=Similar to Pro-resilin.;Transcript_evidence=AK071776 (DDBJ%2C Best hit);ORF_evidence=B6T4Q5 (UniProt);NIAS_FLcDNA=J023110G05;TENOR=Os06t0232000-01
Chr06	irgsp1_rep	five_prime_UTR	6819596	6819804	.	-	.	Parent=Os06t0232000-01
Chr06	irgsp1_rep	CDS	6818531	6819595	.	-	0	Parent=Os06t0232000-01
Chr06	irgsp1_rep	CDS	6816693	6816773	.	-	0	Parent=Os06t0232000-01
Chr06	irgsp1_rep	three_prime_UTR	6816406	6816692	.	-	.	Parent=Os06t0232000-01
Chr06	irgsp1_rep	mRNA	6816406	6818809	.	-	.	ID=Os06t0232000-02;Name=Os06t0232000-02;Locus_id=Os06g0232000;Note=Hypothetical conserved gene.;Transcript_evidence=AK068966 (DDBJ%2C Best hit);ORF_evidence=B6T4Q5 (UniProt);NIAS_FLcDNA=J013170C17;Expression=AK068966;TENOR=Os06t0232000-02;KEGG=Os06t0232000-02
Chr06	irgsp1_rep	CDS	6818468	6818809	.	-	0	Parent=Os06t0232000-02
Chr06	irgsp1_rep	three_prime_UTR	6816406	6818467	.	-	.	Parent=Os06t0232000-02
Chr06	irgsp1_rep	mRNA	6816406	6819654	.	-	.	ID=Os06t0232000-03;Name=Os06t0232000-03;Locus_id=Os06g0232000;Note=Similar to Pro-resilin.;Transcript_evidence=AK106053 (DDBJ%2C Best hit);ORF_evidence=B6T4Q5 (UniProt);NIAS_FLcDNA=001-206-F05;TENOR=Os06t0232000-03
Chr06	irgsp1_rep	five_prime_UTR	6819596	6819654	.	-	.	Parent=Os06t0232000-03
Chr06	irgsp1_rep	CDS	6818531	6819595	.	-	0	Parent=Os06t0232000-03
Chr06	irgsp1_rep	CDS	6816693	6816773	.	-	0	Parent=Os06t0232000-03
Chr06	irgsp1_rep	three_prime_UTR	6816406	6816692	.	-	.	Parent=Os06t0232000-03
Chr06	irgsp1_rep	mRNA	6827797	6832862	.	-	.	ID=Os06t0232100-01;Name=Os06t0232100-01;Locus_id=Os06g0232100;Note=Hypothetical conserved gene.;Transcript_evidence=AK068108 (DDBJ%2C Best hit);ORF_evidence=Q67UL6 (UniProt);NIAS_FLcDNA=J013131F09;Expression=AK068108;TENOR=Os06t0232100-01;KEGG=Os06t0232100-01
Chr06	irgsp1_rep	five_prime_UTR	6832751	6832862	.	-	.	Parent=Os06t0232100-01
Chr06	irgsp1_rep	CDS	6832223	6832750	.	-	0	Parent=Os06t0232100-01
Chr06	irgsp1_rep	CDS	6831097	6831534	.	-	0	Parent=Os06t0232100-01
Chr06	irgsp1_rep	CDS	6830655	6830758	.	-	0	Parent=Os06t0232100-01
Chr06	irgsp1_rep	CDS	6830274	6830316	.	-	1	Parent=Os06t0232100-01
Chr06	irgsp1_rep	three_prime_UTR	6828976	6830273	.	-	.	Parent=Os06t0232100-01
Chr06	irgsp1_rep	three_prime_UTR	6828731	6828771	.	-	.	Parent=Os06t0232100-01
Chr06	irgsp1_rep	three_prime_UTR	6827797	6827896	.	-	.	Parent=Os06t0232100-01
Chr06	irgsp1_rep	mRNA	6823036	6830018	.	-	.	ID=Os06t0232100-02;Name=Os06t0232100-02;Locus_id=Os06g0232100;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK105681 (DDBJ%2C Best hit);ORF_evidence=Q1SMZ9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=001-201-B05;Expression=AK105681;TENOR=Os06t0232100-02;KEGG=Os06t0232100-02
Chr06	irgsp1_rep	five_prime_UTR	6829973	6830018	.	-	.	Parent=Os06t0232100-02
Chr06	irgsp1_rep	CDS	6828976	6829972	.	-	0	Parent=Os06t0232100-02
Chr06	irgsp1_rep	CDS	6828731	6828771	.	-	2	Parent=Os06t0232100-02
Chr06	irgsp1_rep	CDS	6827828	6827896	.	-	0	Parent=Os06t0232100-02
Chr06	irgsp1_rep	CDS	6826787	6826887	.	-	0	Parent=Os06t0232100-02
Chr06	irgsp1_rep	CDS	6825864	6825942	.	-	1	Parent=Os06t0232100-02
Chr06	irgsp1_rep	CDS	6825678	6825776	.	-	0	Parent=Os06t0232100-02
Chr06	irgsp1_rep	CDS	6825531	6825599	.	-	0	Parent=Os06t0232100-02
Chr06	irgsp1_rep	CDS	6824484	6824533	.	-	0	Parent=Os06t0232100-02
Chr06	irgsp1_rep	CDS	6824225	6824401	.	-	1	Parent=Os06t0232100-02
Chr06	irgsp1_rep	CDS	6823533	6823647	.	-	1	Parent=Os06t0232100-02
Chr06	irgsp1_rep	three_prime_UTR	6823036	6823532	.	-	.	Parent=Os06t0232100-02
Chr06	irgsp1_rep	mRNA	6827797	6829788	.	-	.	ID=Os06t0232100-03;Name=Os06t0232100-03;Locus_id=Os06g0232100;Note=Hypothetical conserved gene.;Transcript_evidence=AK104964 (DDBJ%2C Best hit);ORF_evidence=Q67UL6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-120-C01;Expression=AK104964;TENOR=Os06t0232100-03;KEGG=Os06t0232100-03
Chr06	irgsp1_rep	five_prime_UTR	6829787	6829788	.	-	.	Parent=Os06t0232100-03
Chr06	irgsp1_rep	CDS	6828976	6829786	.	-	0	Parent=Os06t0232100-03
Chr06	irgsp1_rep	CDS	6828731	6828771	.	-	2	Parent=Os06t0232100-03
Chr06	irgsp1_rep	CDS	6827801	6827896	.	-	0	Parent=Os06t0232100-03
Chr06	irgsp1_rep	three_prime_UTR	6827797	6827800	.	-	.	Parent=Os06t0232100-03
Chr06	irgsp1_rep	mRNA	6823037	6824533	.	-	.	ID=Os06t0232100-04;Name=Os06t0232100-04;Locus_id=Os06g0232100;Note=Similar to predicted protein.;Transcript_evidence=AK099500 (DDBJ%2C Best hit);ORF_evidence=Q1SMZ9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J013028D24;Expression=AK099500;TENOR=Os06t0232100-04;KEGG=Os06t0232100-04 (EC:2.7.11.25)
Chr06	irgsp1_rep	CDS	6824484	6824533	.	-	0	Parent=Os06t0232100-04
Chr06	irgsp1_rep	CDS	6824225	6824401	.	-	1	Parent=Os06t0232100-04
Chr06	irgsp1_rep	CDS	6823533	6823647	.	-	1	Parent=Os06t0232100-04
Chr06	irgsp1_rep	three_prime_UTR	6823037	6823532	.	-	.	Parent=Os06t0232100-04
Chr06	irgsp1_rep	mRNA	6842811	6848488	.	+	.	ID=Os06t0232200-00;Name=Os06t0232200-00;Locus_id=Os06g0232200;Note=Similar to Fructokinase-2.;Transcript_evidence=CT836318 (DDBJ%2C Best hit);ORF_evidence=B6T2U2 (UniProt);GO=Biological Process: D-ribose metabolic process (GO:0006014),Molecular Function: ribokinase activity (GO:0004747),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Ribokinase (IPR002139),Carbohydrate/puine kinase%2C PfkB%2C conserved site (IPR002173),Carbohydrate/purine kinase (IPR011611);TENOR=Os06t0232200-00;KEGG=Os06t0232200-00 (EC:2.7.1.4)
Chr06	irgsp1_rep	five_prime_UTR	6842811	6842979	.	+	.	Parent=Os06t0232200-00
Chr06	irgsp1_rep	CDS	6842980	6843154	.	+	0	Parent=Os06t0232200-00
Chr06	irgsp1_rep	CDS	6844261	6844478	.	+	2	Parent=Os06t0232200-00
Chr06	irgsp1_rep	CDS	6846040	6846252	.	+	0	Parent=Os06t0232200-00
Chr06	irgsp1_rep	CDS	6846367	6846564	.	+	0	Parent=Os06t0232200-00
Chr06	irgsp1_rep	CDS	6846639	6846776	.	+	0	Parent=Os06t0232200-00
Chr06	irgsp1_rep	CDS	6847711	6847827	.	+	0	Parent=Os06t0232200-00
Chr06	irgsp1_rep	CDS	6848153	6848287	.	+	0	Parent=Os06t0232200-00
Chr06	irgsp1_rep	three_prime_UTR	6848288	6848488	.	+	.	Parent=Os06t0232200-00
Chr06	irgsp1_rep	mRNA	6842831	6848541	.	-	.	ID=Os06t0232233-01;Name=Os06t0232233-01;Locus_id=Os06g0232233;Note=Hypothetical gene.;Transcript_evidence=AK289223 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100067H01;TENOR=Os06t0232233-01;KEGG=Os06t0232233-01
Chr06	irgsp1_rep	five_prime_UTR	6848153	6848541	.	-	.	Parent=Os06t0232233-01
Chr06	irgsp1_rep	five_prime_UTR	6847711	6847827	.	-	.	Parent=Os06t0232233-01
Chr06	irgsp1_rep	five_prime_UTR	6846639	6846776	.	-	.	Parent=Os06t0232233-01
Chr06	irgsp1_rep	five_prime_UTR	6846367	6846564	.	-	.	Parent=Os06t0232233-01
Chr06	irgsp1_rep	five_prime_UTR	6846040	6846252	.	-	.	Parent=Os06t0232233-01
Chr06	irgsp1_rep	five_prime_UTR	6844472	6844478	.	-	.	Parent=Os06t0232233-01
Chr06	irgsp1_rep	CDS	6844261	6844471	.	-	0	Parent=Os06t0232233-01
Chr06	irgsp1_rep	CDS	6842856	6843154	.	-	2	Parent=Os06t0232233-01
Chr06	irgsp1_rep	three_prime_UTR	6842831	6842855	.	-	.	Parent=Os06t0232233-01
Chr06	irgsp1_rep	mRNA	6866393	6869521	.	+	.	ID=Os06t0232300-01;Name=Os06t0232300-01;Locus_id=Os06g0232300;RAP-DB Gene Symbol Synonym(s)=OsPIN1a;RAP-DB Gene Name Synonym(s)=PIN-FORMED1a;CGSNL Gene Symbol=PIN1A;CGSNL Gene Name=PIN PROTEIN 1A;Oryzabase Gene Symbol Synonym(s)=PIN1C%2C OsPIN1C%2C OsPIN1c%2C OsPIN1a;Oryzabase Gene Name Synonym(s)=PIN PROTEIN 1C;Note=PIN protein%2C Auxin efflux carrier%2C Auxin transport and signaling%2C "Root%2C shoot and inflorescence development";Transcript_evidence=AK103208;ORF_evidence=Q67UL3;GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral component of membrane (GO:0016021);InterPro=Membrane transport protein (IPR004776),Auxin efflux carrier%2C plant type (IPR014024);NIAS_FLcDNA=J033122I23;Manual Curation=August 16%2C 2019;Literature_PMID=31410483;Oryzabase=6764;Expression=AK103208;TENOR=Os06t0232300-01;KEGG=Os06t0232300-01
Chr06	irgsp1_rep	five_prime_UTR	6866393	6866529	.	+	.	Parent=Os06t0232300-01
Chr06	irgsp1_rep	CDS	6866530	6867658	.	+	0	Parent=Os06t0232300-01
Chr06	irgsp1_rep	CDS	6867760	6868021	.	+	2	Parent=Os06t0232300-01
Chr06	irgsp1_rep	CDS	6868115	6868200	.	+	1	Parent=Os06t0232300-01
Chr06	irgsp1_rep	CDS	6868300	6868457	.	+	2	Parent=Os06t0232300-01
Chr06	irgsp1_rep	CDS	6868737	6868813	.	+	0	Parent=Os06t0232300-01
Chr06	irgsp1_rep	CDS	6868902	6868968	.	+	1	Parent=Os06t0232300-01
Chr06	irgsp1_rep	three_prime_UTR	6868969	6869521	.	+	.	Parent=Os06t0232300-01
Chr06	irgsp1_rep	mRNA	6866525	6868968	.	-	.	ID=Os06t0232350-00;Name=Os06t0232350-00;Locus_id=Os06g0232350;Note=Hypothetical protein.;Transcript_evidence=AK357068 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0232350-00
Chr06	irgsp1_rep	five_prime_UTR	6868902	6868968	.	-	.	Parent=Os06t0232350-00
Chr06	irgsp1_rep	five_prime_UTR	6868750	6868813	.	-	.	Parent=Os06t0232350-00
Chr06	irgsp1_rep	five_prime_UTR	6868294	6868471	.	-	.	Parent=Os06t0232350-00
Chr06	irgsp1_rep	five_prime_UTR	6868112	6868196	.	-	.	Parent=Os06t0232350-00
Chr06	irgsp1_rep	five_prime_UTR	6867870	6868018	.	-	.	Parent=Os06t0232350-00
Chr06	irgsp1_rep	CDS	6867740	6867869	.	-	0	Parent=Os06t0232350-00
Chr06	irgsp1_rep	CDS	6866525	6867644	.	-	2	Parent=Os06t0232350-00
Chr06	irgsp1_rep	mRNA	6878753	6879545	.	-	.	ID=Os06t0232400-01;Name=Os06t0232400-01;Locus_id=Os06g0232400;Note=Hypothetical conserved gene.;Transcript_evidence=AK242376 (DDBJ%2C Best hit);ORF_evidence=B8B4A3 (UniProt);NIAS_FLcDNA=J080039H07;TENOR=Os06t0232400-01;KEGG=Os06t0232400-01
Chr06	irgsp1_rep	five_prime_UTR	6879420	6879545	.	-	.	Parent=Os06t0232400-01
Chr06	irgsp1_rep	CDS	6878937	6879419	.	-	0	Parent=Os06t0232400-01
Chr06	irgsp1_rep	three_prime_UTR	6878753	6878936	.	-	.	Parent=Os06t0232400-01
Chr06	irgsp1_rep	mRNA	6892773	6895614	.	-	.	ID=Os06t0232600-01;Name=Os06t0232600-01;Locus_id=Os06g0232600;CGSNL Gene Symbol=DHAR2;CGSNL Gene Name=DEHYDROASCORBATE REDUCTASE 2;Oryzabase Gene Symbol Synonym(s)=OsDHAR2;Oryzabase Gene Name Synonym(s)=DHAR classGLUTATHIONE S-TRANSFERASE 2;Note=Similar to Dehydroascorbate reductase.;Transcript_evidence=AK106013 (DDBJ%2C Best hit);ORF_evidence=NP_001151414.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=001-206-B04;Oryzabase=9573;Expression=AK106013;TENOR=Os06t0232600-01;KEGG=Os06t0232600-01
Chr06	irgsp1_rep	five_prime_UTR	6895492	6895614	.	-	.	Parent=Os06t0232600-01
Chr06	irgsp1_rep	CDS	6895254	6895491	.	-	0	Parent=Os06t0232600-01
Chr06	irgsp1_rep	CDS	6894459	6894549	.	-	2	Parent=Os06t0232600-01
Chr06	irgsp1_rep	CDS	6894218	6894361	.	-	1	Parent=Os06t0232600-01
Chr06	irgsp1_rep	CDS	6893679	6893796	.	-	1	Parent=Os06t0232600-01
Chr06	irgsp1_rep	CDS	6893422	6893562	.	-	0	Parent=Os06t0232600-01
Chr06	irgsp1_rep	CDS	6892952	6893038	.	-	0	Parent=Os06t0232600-01
Chr06	irgsp1_rep	three_prime_UTR	6892773	6892951	.	-	.	Parent=Os06t0232600-01
Chr06	irgsp1_rep	mRNA	6892683	6892995	.	-	.	ID=Os06t0232600-02;Name=Os06t0232600-02;Locus_id=Os06g0232600;CGSNL Gene Symbol=DHAR2;CGSNL Gene Name=DEHYDROASCORBATE REDUCTASE 2;Oryzabase Gene Symbol Synonym(s)=OsDHAR2;Oryzabase Gene Name Synonym(s)=DHAR classGLUTATHIONE S-TRANSFERASE 2;Note=Non-protein coding transcript.;Transcript_evidence=AK059285 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-025-D09;Oryzabase=9573;TENOR=Os06t0232600-02
Chr06	irgsp1_rep	exon	6892683	6892995	.	-	.	Parent=Os06t0232600-02
Chr06	irgsp1_rep	mRNA	6892726	6895644	.	+	.	ID=Os06t0232650-01;Name=Os06t0232650-01;Locus_id=Os06g0232650;Note=Non-protein coding transcript.;Transcript_evidence=AK070471 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023050F24;TENOR=Os06t0232650-01
Chr06	irgsp1_rep	exon	6892726	6893038	.	+	.	Parent=Os06t0232650-01
Chr06	irgsp1_rep	exon	6893422	6893562	.	+	.	Parent=Os06t0232650-01
Chr06	irgsp1_rep	exon	6893679	6893796	.	+	.	Parent=Os06t0232650-01
Chr06	irgsp1_rep	exon	6894218	6894361	.	+	.	Parent=Os06t0232650-01
Chr06	irgsp1_rep	exon	6894459	6894549	.	+	.	Parent=Os06t0232650-01
Chr06	irgsp1_rep	exon	6895254	6895644	.	+	.	Parent=Os06t0232650-01
Chr06	irgsp1_rep	mRNA	6895777	6901079	.	+	.	ID=Os06t0232700-01;Name=Os06t0232700-01;Locus_id=Os06g0232700;Note=Similar to SWIM zinc finger family protein.;Transcript_evidence=AK241538 (DDBJ%2C Best hit);ORF_evidence=Q10MM8 (UniProt);InterPro=Aminotransferase-like%2C plant mobile domain (IPR019557);NIAS_FLcDNA=J065174I21;TENOR=Os06t0232700-01;KEGG=Os06t0232700-01
Chr06	irgsp1_rep	five_prime_UTR	6895777	6895869	.	+	.	Parent=Os06t0232700-01
Chr06	irgsp1_rep	five_prime_UTR	6897998	6898008	.	+	.	Parent=Os06t0232700-01
Chr06	irgsp1_rep	CDS	6898009	6898157	.	+	0	Parent=Os06t0232700-01
Chr06	irgsp1_rep	CDS	6898242	6898611	.	+	1	Parent=Os06t0232700-01
Chr06	irgsp1_rep	CDS	6898693	6899112	.	+	0	Parent=Os06t0232700-01
Chr06	irgsp1_rep	CDS	6899200	6899498	.	+	0	Parent=Os06t0232700-01
Chr06	irgsp1_rep	CDS	6899573	6899831	.	+	1	Parent=Os06t0232700-01
Chr06	irgsp1_rep	CDS	6899915	6900224	.	+	0	Parent=Os06t0232700-01
Chr06	irgsp1_rep	CDS	6900309	6900434	.	+	2	Parent=Os06t0232700-01
Chr06	irgsp1_rep	CDS	6900556	6900600	.	+	2	Parent=Os06t0232700-01
Chr06	irgsp1_rep	CDS	6900835	6900893	.	+	2	Parent=Os06t0232700-01
Chr06	irgsp1_rep	three_prime_UTR	6900894	6901079	.	+	.	Parent=Os06t0232700-01
Chr06	irgsp1_rep	mRNA	6906933	6908028	.	-	.	ID=Os06t0232800-01;Name=Os06t0232800-01;Locus_id=Os06g0232800;Note=Conserved hypothetical protein.;Transcript_evidence=AK102149 (DDBJ%2C Best hit);ORF_evidence=NP_001176005.1 (RefSeq);NIAS_FLcDNA=J033086C22;Expression=AK102149;TENOR=Os06t0232800-01;KEGG=Os06t0232800-01
Chr06	irgsp1_rep	five_prime_UTR	6907498	6908028	.	-	.	Parent=Os06t0232800-01
Chr06	irgsp1_rep	five_prime_UTR	6907365	6907407	.	-	.	Parent=Os06t0232800-01
Chr06	irgsp1_rep	five_prime_UTR	6907182	6907242	.	-	.	Parent=Os06t0232800-01
Chr06	irgsp1_rep	CDS	6906948	6907181	.	-	0	Parent=Os06t0232800-01
Chr06	irgsp1_rep	three_prime_UTR	6906933	6906947	.	-	.	Parent=Os06t0232800-01
Chr06	irgsp1_rep	mRNA	6905954	6908001	.	-	.	ID=Os06t0232800-02;Name=Os06t0232800-02;Locus_id=Os06g0232800;Note=Conserved hypothetical protein.;Transcript_evidence=AK072147 (DDBJ%2C Best hit);ORF_evidence=NP_001176005.1 (RefSeq);NIAS_FLcDNA=J013128D23;Expression=AK072147;TENOR=Os06t0232800-02;KEGG=Os06t0232800-02
Chr06	irgsp1_rep	five_prime_UTR	6907182	6908001	.	-	.	Parent=Os06t0232800-02
Chr06	irgsp1_rep	CDS	6906948	6907181	.	-	0	Parent=Os06t0232800-02
Chr06	irgsp1_rep	three_prime_UTR	6905954	6906947	.	-	.	Parent=Os06t0232800-02
Chr06	irgsp1_rep	mRNA	6915702	6916605	.	+	.	ID=Os06t0233000-01;Name=Os06t0233000-01;Locus_id=Os06g0233000;Note=Conserved hypothetical protein.;Transcript_evidence=AK063118 (DDBJ%2C Best hit);ORF_evidence=Q67UK6 (UniProt);NIAS_FLcDNA=001-111-E04;TENOR=Os06t0233000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	6915702	6915702	.	+	.	Parent=Os06t0233000-01
Chr06	irgsp1_rep	CDS	6915703	6915973	.	+	0	Parent=Os06t0233000-01
Chr06	irgsp1_rep	CDS	6916111	6916207	.	+	2	Parent=Os06t0233000-01
Chr06	irgsp1_rep	CDS	6916389	6916605	.	+	1	Parent=Os06t0233000-01
Chr06	irgsp1_rep	mRNA	6915777	6916229	.	-	.	ID=Os06t0233101-00;Name=Os06t0233101-00;Locus_id=Os06g0233101;Note=Hypothetical protein.;Transcript_evidence=EU946822 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0233101-00
Chr06	irgsp1_rep	CDS	6916092	6916229	.	-	0	Parent=Os06t0233101-00
Chr06	irgsp1_rep	CDS	6915777	6916032	.	-	0	Parent=Os06t0233101-00
Chr06	irgsp1_rep	mRNA	6923330	6924997	.	-	.	ID=Os06t0233200-01;Name=Os06t0233200-01;Locus_id=Os06g0233200;Note=Similar to RING-H2 finger protein ATL1R (RING-H2 finger protein ATL8).;Transcript_evidence=AK108060 (DDBJ%2C Best hit);ORF_evidence=B6TV57 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=002-138-B01;Expression=AK108060;TENOR=Os06t0233200-01;KEGG=Os06t0233200-01
Chr06	irgsp1_rep	five_prime_UTR	6924730	6924997	.	-	.	Parent=Os06t0233200-01
Chr06	irgsp1_rep	CDS	6923419	6924729	.	-	0	Parent=Os06t0233200-01
Chr06	irgsp1_rep	three_prime_UTR	6923330	6923418	.	-	.	Parent=Os06t0233200-01
Chr06	irgsp1_rep	mRNA	6928598	6932490	.	-	.	ID=Os06t0233400-01;Name=Os06t0233400-01;Locus_id=Os06g0233400;Note=Defective in cullin neddylation domain containing protein.;Transcript_evidence=AK061460 (DDBJ%2C Best hit);ORF_evidence=D3U2G0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Domain of unknown function DUF298 (IPR005176),UBA-like (IPR009060),Defective-in-cullin neddylation protein (IPR014764);NIAS_FLcDNA=006-308-B04;TENOR=Os06t0233400-01
Chr06	irgsp1_rep	five_prime_UTR	6932328	6932490	.	-	.	Parent=Os06t0233400-01
Chr06	irgsp1_rep	CDS	6932325	6932327	.	-	0	Parent=Os06t0233400-01
Chr06	irgsp1_rep	CDS	6932006	6932067	.	-	0	Parent=Os06t0233400-01
Chr06	irgsp1_rep	CDS	6931224	6931357	.	-	1	Parent=Os06t0233400-01
Chr06	irgsp1_rep	CDS	6930981	6931039	.	-	2	Parent=Os06t0233400-01
Chr06	irgsp1_rep	CDS	6930300	6930323	.	-	0	Parent=Os06t0233400-01
Chr06	irgsp1_rep	CDS	6930032	6930114	.	-	0	Parent=Os06t0233400-01
Chr06	irgsp1_rep	CDS	6929869	6929933	.	-	1	Parent=Os06t0233400-01
Chr06	irgsp1_rep	CDS	6929647	6929696	.	-	2	Parent=Os06t0233400-01
Chr06	irgsp1_rep	CDS	6929404	6929505	.	-	0	Parent=Os06t0233400-01
Chr06	irgsp1_rep	CDS	6929234	6929293	.	-	0	Parent=Os06t0233400-01
Chr06	irgsp1_rep	CDS	6928855	6928965	.	-	0	Parent=Os06t0233400-01
Chr06	irgsp1_rep	three_prime_UTR	6928598	6928854	.	-	.	Parent=Os06t0233400-01
Chr06	irgsp1_rep	mRNA	6928598	6932468	.	-	.	ID=Os06t0233400-02;Name=Os06t0233400-02;Locus_id=Os06g0233400;Note=Defective in cullin neddylation domain containing protein.;Transcript_evidence=AK104717 (DDBJ%2C Best hit),AK098976 (DDBJ%2C Best hit),AK099013 (DDBJ%2C Best hit);ORF_evidence=D3U2G0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Domain of unknown function DUF298 (IPR005176),UBA-like (IPR009060),Defective-in-cullin neddylation protein (IPR014764);NIAS_FLcDNA=001-038-A08,J013090L17,J013116N23;TENOR=Os06t0233400-02
Chr06	irgsp1_rep	five_prime_UTR	6932328	6932468	.	-	.	Parent=Os06t0233400-02
Chr06	irgsp1_rep	CDS	6932325	6932327	.	-	0	Parent=Os06t0233400-02
Chr06	irgsp1_rep	CDS	6932006	6932067	.	-	0	Parent=Os06t0233400-02
Chr06	irgsp1_rep	CDS	6931224	6931357	.	-	1	Parent=Os06t0233400-02
Chr06	irgsp1_rep	CDS	6930981	6931039	.	-	2	Parent=Os06t0233400-02
Chr06	irgsp1_rep	CDS	6930300	6930323	.	-	0	Parent=Os06t0233400-02
Chr06	irgsp1_rep	CDS	6930032	6930114	.	-	0	Parent=Os06t0233400-02
Chr06	irgsp1_rep	CDS	6929869	6929933	.	-	1	Parent=Os06t0233400-02
Chr06	irgsp1_rep	CDS	6929647	6929696	.	-	2	Parent=Os06t0233400-02
Chr06	irgsp1_rep	CDS	6929404	6929505	.	-	0	Parent=Os06t0233400-02
Chr06	irgsp1_rep	CDS	6929234	6929293	.	-	0	Parent=Os06t0233400-02
Chr06	irgsp1_rep	CDS	6928855	6928965	.	-	0	Parent=Os06t0233400-02
Chr06	irgsp1_rep	three_prime_UTR	6928598	6928854	.	-	.	Parent=Os06t0233400-02
Chr06	irgsp1_rep	mRNA	6934457	6935495	.	-	.	ID=Os06t0233451-00;Name=Os06t0233451-00;Locus_id=Os06g0233451;Note=Non-protein coding transcript.;Transcript_evidence=EU967040 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0233451-00
Chr06	irgsp1_rep	exon	6935375	6935495	.	-	.	Parent=Os06t0233451-00
Chr06	irgsp1_rep	exon	6934457	6934839	.	-	.	Parent=Os06t0233451-00
Chr06	irgsp1_rep	mRNA	6953695	6956081	.	-	.	ID=Os06t0233800-01;Name=Os06t0233800-01;Locus_id=Os06g0233800;Note=Conserved hypothetical protein.;Transcript_evidence=AK287572 (DDBJ%2C Best hit);ORF_evidence=NP_001057234.1 (RefSeq);NIAS_FLcDNA=J065033C08;TENOR=Os06t0233800-01;KEGG=Os06t0233800-01
Chr06	irgsp1_rep	five_prime_UTR	6955802	6956081	.	-	.	Parent=Os06t0233800-01
Chr06	irgsp1_rep	CDS	6955662	6955801	.	-	0	Parent=Os06t0233800-01
Chr06	irgsp1_rep	CDS	6955491	6955544	.	-	1	Parent=Os06t0233800-01
Chr06	irgsp1_rep	CDS	6955202	6955387	.	-	1	Parent=Os06t0233800-01
Chr06	irgsp1_rep	CDS	6955022	6955127	.	-	1	Parent=Os06t0233800-01
Chr06	irgsp1_rep	CDS	6954863	6954904	.	-	0	Parent=Os06t0233800-01
Chr06	irgsp1_rep	CDS	6954615	6954671	.	-	0	Parent=Os06t0233800-01
Chr06	irgsp1_rep	CDS	6953898	6954428	.	-	0	Parent=Os06t0233800-01
Chr06	irgsp1_rep	three_prime_UTR	6953695	6953897	.	-	.	Parent=Os06t0233800-01
Chr06	irgsp1_rep	mRNA	6969629	6969927	.	+	.	ID=Os06t0233950-00;Name=Os06t0233950-00;Locus_id=Os06g0233950;Note=Hypothetical protein.;Transcript_evidence=FP097651 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0233950-00
Chr06	irgsp1_rep	five_prime_UTR	6969629	6969686	.	+	.	Parent=Os06t0233950-00
Chr06	irgsp1_rep	CDS	6969687	6969911	.	+	0	Parent=Os06t0233950-00
Chr06	irgsp1_rep	three_prime_UTR	6969912	6969927	.	+	.	Parent=Os06t0233950-00
Chr06	irgsp1_rep	mRNA	6980036	6986313	.	+	.	ID=Os06t0234100-01;Name=Os06t0234100-01;Locus_id=Os06g0234100;Oryzabase Gene Symbol Synonym(s)=OsDegp10%2C DEGP10%2C OsDeg9.2;Oryzabase Gene Name Synonym(s)=Deg protease 10%2C DEG PROTEASE 10;Note=Peptidase S1C%2C HrtA/DegP2/Q/S family protein.;Transcript_evidence=AK120193 (DDBJ%2C Best hit);ORF_evidence=NP_568577.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: catalytic activity (GO:0003824),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: protein binding (GO:0005515);InterPro=Peptidase S1/S6%2C chymotrypsin/Hap (IPR001254),PDZ/DHR/GLGF (IPR001478),Peptidase S1C%2C HrtA/DegP2/Q/S (IPR001940),Peptidase cysteine/serine%2C trypsin-like (IPR009003),Serine endopeptidase DegP2 (IPR015724);NIAS_FLcDNA=J013035P19;Oryzabase=20086;Expression=AK120193;TENOR=Os06t0234100-01;KEGG=Os06t0234100-01
Chr06	irgsp1_rep	five_prime_UTR	6980036	6980074	.	+	.	Parent=Os06t0234100-01
Chr06	irgsp1_rep	CDS	6980075	6980798	.	+	0	Parent=Os06t0234100-01
Chr06	irgsp1_rep	CDS	6981663	6981862	.	+	2	Parent=Os06t0234100-01
Chr06	irgsp1_rep	CDS	6982005	6982185	.	+	0	Parent=Os06t0234100-01
Chr06	irgsp1_rep	CDS	6983038	6983229	.	+	2	Parent=Os06t0234100-01
Chr06	irgsp1_rep	CDS	6983675	6983907	.	+	2	Parent=Os06t0234100-01
Chr06	irgsp1_rep	CDS	6984720	6984821	.	+	0	Parent=Os06t0234100-01
Chr06	irgsp1_rep	CDS	6984959	6985009	.	+	0	Parent=Os06t0234100-01
Chr06	irgsp1_rep	CDS	6985417	6985521	.	+	0	Parent=Os06t0234100-01
Chr06	irgsp1_rep	CDS	6985644	6985742	.	+	0	Parent=Os06t0234100-01
Chr06	irgsp1_rep	three_prime_UTR	6985743	6986313	.	+	.	Parent=Os06t0234100-01
Chr06	irgsp1_rep	mRNA	6981669	6986246	.	+	.	ID=Os06t0234100-02;Name=Os06t0234100-02;Locus_id=Os06g0234100;Oryzabase Gene Symbol Synonym(s)=OsDegp10%2C DEGP10%2C OsDeg9.2;Oryzabase Gene Name Synonym(s)=Deg protease 10%2C DEG PROTEASE 10;Note=Similar to DEGP9 (DEGP PROTEASE 9)%3B serine-type peptidase/ trypsin.;Transcript_evidence=AK058600 (DDBJ%2C Best hit);ORF_evidence=NP_568577.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: catalytic activity (GO:0003824),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: protein binding (GO:0005515);InterPro=Peptidase S1/S6%2C chymotrypsin/Hap (IPR001254),PDZ/DHR/GLGF (IPR001478),Peptidase S1C%2C HrtA/DegP2/Q/S (IPR001940),Peptidase cysteine/serine%2C trypsin-like (IPR009003),Serine endopeptidase DegP2 (IPR015724);NIAS_FLcDNA=001-017-H07;Oryzabase=20086;Expression=AK058600;TENOR=Os06t0234100-02;KEGG=Os06t0234100-02
Chr06	irgsp1_rep	five_prime_UTR	6981669	6981670	.	+	.	Parent=Os06t0234100-02
Chr06	irgsp1_rep	CDS	6981671	6981862	.	+	0	Parent=Os06t0234100-02
Chr06	irgsp1_rep	CDS	6982005	6982185	.	+	0	Parent=Os06t0234100-02
Chr06	irgsp1_rep	CDS	6983038	6983229	.	+	2	Parent=Os06t0234100-02
Chr06	irgsp1_rep	CDS	6983675	6983907	.	+	2	Parent=Os06t0234100-02
Chr06	irgsp1_rep	CDS	6984720	6984821	.	+	0	Parent=Os06t0234100-02
Chr06	irgsp1_rep	CDS	6984959	6985009	.	+	0	Parent=Os06t0234100-02
Chr06	irgsp1_rep	CDS	6985417	6985521	.	+	0	Parent=Os06t0234100-02
Chr06	irgsp1_rep	CDS	6985644	6985742	.	+	0	Parent=Os06t0234100-02
Chr06	irgsp1_rep	three_prime_UTR	6985743	6986246	.	+	.	Parent=Os06t0234100-02
Chr06	irgsp1_rep	mRNA	6980684	6981756	.	-	.	ID=Os06t0234150-00;Name=Os06t0234150-00;Locus_id=Os06g0234150;Note=Non-protein coding transcript.;Transcript_evidence=BT083575 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0234150-00
Chr06	irgsp1_rep	exon	6981673	6981756	.	-	.	Parent=Os06t0234150-00
Chr06	irgsp1_rep	exon	6980684	6980814	.	-	.	Parent=Os06t0234150-00
Chr06	irgsp1_rep	mRNA	6990939	6992155	.	+	.	ID=Os06t0234200-01;Name=Os06t0234200-01;Locus_id=Os06g0234200;CGSNL Gene Symbol=RAC4;CGSNL Gene Name=RAC/ROP-TYPE GTPASE 4;Oryzabase Gene Symbol Synonym(s)=OsRAC4%2C OsRac4%2C ROP4%2C OsRop4;Oryzabase Gene Name Synonym(s)=Rac-like GTP-binding protein 4%2C GTPase protein ROP4%2C Rac/Rop-type GTPase 4;Note=Similar to Rac-like GTP-binding protein 4.;Transcript_evidence=AK063083 (DDBJ%2C Best hit);ORF_evidence=D9ZHB7 (UniProt);GO=Biological Process: small GTPase mediated signal transduction (GO:0007264),Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Small GTPase superfamily%2C Rho type (IPR003578),Small GTP-binding protein domain (IPR005225);NIAS_FLcDNA=001-111-A05;Oryzabase=6767;Expression=AK063083;TENOR=Os06t0234200-01;KEGG=Os06t0234200-01
Chr06	irgsp1_rep	five_prime_UTR	6990939	6991128	.	+	.	Parent=Os06t0234200-01
Chr06	irgsp1_rep	CDS	6991129	6991233	.	+	0	Parent=Os06t0234200-01
Chr06	irgsp1_rep	CDS	6991572	6991659	.	+	0	Parent=Os06t0234200-01
Chr06	irgsp1_rep	CDS	6991789	6991928	.	+	2	Parent=Os06t0234200-01
Chr06	irgsp1_rep	three_prime_UTR	6991929	6992155	.	+	.	Parent=Os06t0234200-01
Chr06	irgsp1_rep	mRNA	6990946	6994304	.	+	.	ID=Os06t0234200-02;Name=Os06t0234200-02;Locus_id=Os06g0234200;CGSNL Gene Symbol=RAC4;CGSNL Gene Name=RAC/ROP-TYPE GTPASE 4;Oryzabase Gene Symbol Synonym(s)=OsRAC4%2C OsRac4%2C ROP4%2C OsRop4;Oryzabase Gene Name Synonym(s)=Rac-like GTP-binding protein 4%2C GTPase protein ROP4%2C Rac/Rop-type GTPase 4;Note=Similar to Rac-like GTP-binding protein 4.;Transcript_evidence=AK067253 (DDBJ%2C Best hit);ORF_evidence=D9ZHB7 (UniProt);GO=Biological Process: small GTPase mediated signal transduction (GO:0007264),Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Small GTPase superfamily%2C Rho type (IPR003578),Small GTP-binding protein domain (IPR005225);NIAS_FLcDNA=J013098K11;Oryzabase=6767;Expression=AK067253;TENOR=Os06t0234200-02;KEGG=Os06t0234200-02
Chr06	irgsp1_rep	five_prime_UTR	6990946	6991128	.	+	.	Parent=Os06t0234200-02
Chr06	irgsp1_rep	CDS	6991129	6991233	.	+	0	Parent=Os06t0234200-02
Chr06	irgsp1_rep	CDS	6991572	6991659	.	+	0	Parent=Os06t0234200-02
Chr06	irgsp1_rep	CDS	6991789	6991928	.	+	2	Parent=Os06t0234200-02
Chr06	irgsp1_rep	three_prime_UTR	6991929	6993602	.	+	.	Parent=Os06t0234200-02
Chr06	irgsp1_rep	three_prime_UTR	6993740	6993805	.	+	.	Parent=Os06t0234200-02
Chr06	irgsp1_rep	three_prime_UTR	6993908	6994011	.	+	.	Parent=Os06t0234200-02
Chr06	irgsp1_rep	three_prime_UTR	6994151	6994304	.	+	.	Parent=Os06t0234200-02
Chr06	irgsp1_rep	mRNA	6990980	6994527	.	+	.	ID=Os06t0234200-03;Name=Os06t0234200-03;Locus_id=Os06g0234200;CGSNL Gene Symbol=RAC4;CGSNL Gene Name=RAC/ROP-TYPE GTPASE 4;Oryzabase Gene Symbol Synonym(s)=OsRAC4%2C OsRac4%2C ROP4%2C OsRop4;Oryzabase Gene Name Synonym(s)=Rac-like GTP-binding protein 4%2C GTPase protein ROP4%2C Rac/Rop-type GTPase 4;Note=Similar to RAC-like GTP binding protein ARAC8 (GTPase protein ROP10).;Transcript_evidence=AK061102 (DDBJ%2C Best hit);ORF_evidence=D9ZHB7 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Cellular Component: membrane (GO:0016020),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C Ras type (IPR020849);NIAS_FLcDNA=006-207-B05;Oryzabase=6767;Expression=AK061102;TENOR=Os06t0234200-03;KEGG=Os06t0234200-03
Chr06	irgsp1_rep	five_prime_UTR	6990980	6991128	.	+	.	Parent=Os06t0234200-03
Chr06	irgsp1_rep	CDS	6991129	6991233	.	+	0	Parent=Os06t0234200-03
Chr06	irgsp1_rep	CDS	6991572	6991659	.	+	0	Parent=Os06t0234200-03
Chr06	irgsp1_rep	CDS	6991789	6991898	.	+	2	Parent=Os06t0234200-03
Chr06	irgsp1_rep	CDS	6992012	6992075	.	+	0	Parent=Os06t0234200-03
Chr06	irgsp1_rep	CDS	6993538	6993602	.	+	2	Parent=Os06t0234200-03
Chr06	irgsp1_rep	CDS	6993740	6993805	.	+	0	Parent=Os06t0234200-03
Chr06	irgsp1_rep	CDS	6993908	6994011	.	+	0	Parent=Os06t0234200-03
Chr06	irgsp1_rep	CDS	6994151	6994196	.	+	1	Parent=Os06t0234200-03
Chr06	irgsp1_rep	three_prime_UTR	6994197	6994527	.	+	.	Parent=Os06t0234200-03
Chr06	irgsp1_rep	mRNA	6995343	6996671	.	-	.	ID=Os06t0234300-00;Name=Os06t0234300-00;Locus_id=Os06g0234300;Oryzabase Gene Symbol Synonym(s)=OsTBL50%2C TBL50;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 50;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q67VA1 (UniProt);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);Oryzabase=21505;TENOR=Os06t0234300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	6995343	6996671	.	-	0	Parent=Os06t0234300-00
Chr06	irgsp1_rep	mRNA	7000436	7001602	.	-	.	ID=Os06t0234400-00;Name=Os06t0234400-00;Locus_id=Os06g0234400;Oryzabase Gene Symbol Synonym(s)=OsTBL51%2C TBL51;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 51;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q67VA0 (UniProt);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);Oryzabase=21506;TENOR=Os06t0234400-00;KEGG=Os06t0234400-00
Chr06	irgsp1_rep	CDS	7000436	7001602	.	-	0	Parent=Os06t0234400-00
Chr06	irgsp1_rep	mRNA	7005872	7008330	.	-	.	ID=Os06t0234600-01;Name=Os06t0234600-01;Locus_id=Os06g0234600;Oryzabase Gene Symbol Synonym(s)=OsTBL52%2C TBL52;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 52;Note=Domain of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=AK063415 (DDBJ%2C Best hit);ORF_evidence=A2YB19 (UniProt);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=001-115-B08;Oryzabase=21507;TENOR=Os06t0234600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	7008144	7008330	.	-	0	Parent=Os06t0234600-01
Chr06	irgsp1_rep	CDS	7007242	7007534	.	-	2	Parent=Os06t0234600-01
Chr06	irgsp1_rep	CDS	7006115	7006942	.	-	0	Parent=Os06t0234600-01
Chr06	irgsp1_rep	three_prime_UTR	7005872	7006114	.	-	.	Parent=Os06t0234600-01
Chr06	irgsp1_rep	mRNA	7013989	7018602	.	+	.	ID=Os06t0234633-00;Name=Os06t0234633-00;Locus_id=Os06g0234633;Note=Similar to Inositol phosphate kinase.;Transcript_evidence=BT009032 (DDBJ);ORF_evidence=A0JJZ6 (UniProt);TENOR=Os06t0234633-00
Chr06	irgsp1_rep	five_prime_UTR	7013989	7014000	.	+	.	Parent=Os06t0234633-00
Chr06	irgsp1_rep	CDS	7014001	7014327	.	+	0	Parent=Os06t0234633-00
Chr06	irgsp1_rep	CDS	7018168	7018602	.	+	0	Parent=Os06t0234633-00
Chr06	irgsp1_rep	mRNA	7015818	7017180	.	+	.	ID=Os06t0234700-01;Name=Os06t0234700-01;Locus_id=Os06g0234700;Note=Non-protein coding transcript.;Transcript_evidence=AK103533 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J033132A10;TENOR=Os06t0234700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	exon	7015818	7017180	.	+	.	Parent=Os06t0234700-01
Chr06	irgsp1_rep	mRNA	7019819	7022061	.	-	.	ID=Os06t0234800-01;Name=Os06t0234800-01;Locus_id=Os06g0234800;Oryzabase Gene Symbol Synonym(s)=OsTBL42%2C TBL42;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 42;Note=Conserved hypothetical protein.;Transcript_evidence=AK070785 (DDBJ%2C Best hit);ORF_evidence=B9FSD7 (UniProt);NIAS_FLcDNA=J023065D10;Oryzabase=21497;TENOR=Os06t0234800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	7021974	7022061	.	-	.	Parent=Os06t0234800-01
Chr06	irgsp1_rep	CDS	7021775	7021973	.	-	0	Parent=Os06t0234800-01
Chr06	irgsp1_rep	CDS	7021004	7021404	.	-	2	Parent=Os06t0234800-01
Chr06	irgsp1_rep	three_prime_UTR	7020109	7021003	.	-	.	Parent=Os06t0234800-01
Chr06	irgsp1_rep	three_prime_UTR	7019819	7019972	.	-	.	Parent=Os06t0234800-01
Chr06	irgsp1_rep	mRNA	7025603	7027002	.	-	.	ID=Os06t0234900-00;Name=Os06t0234900-00;Locus_id=Os06g0234900;Oryzabase Gene Symbol Synonym(s)=OsTBL45%2C TBL45;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 45;Note=Domain of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q67V94 (UniProt);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);Oryzabase=21500;TENOR=Os06t0234900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	7026782	7027002	.	-	0	Parent=Os06t0234900-00
Chr06	irgsp1_rep	CDS	7025603	7026686	.	-	1	Parent=Os06t0234900-00
Chr06	irgsp1_rep	mRNA	7031413	7032804	.	-	.	ID=Os06t0235000-00;Name=Os06t0235000-00;Locus_id=Os06g0235000;Oryzabase Gene Symbol Synonym(s)=OsTBL43%2C TBL43;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 43;Note=Domain of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q67V93 (UniProt);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);Oryzabase=21498;TENOR=Os06t0235000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	7032603	7032804	.	-	0	Parent=Os06t0235000-00
Chr06	irgsp1_rep	CDS	7031413	7032515	.	-	2	Parent=Os06t0235000-00
Chr06	irgsp1_rep	mRNA	7037047	7038406	.	-	.	ID=Os06t0235100-00;Name=Os06t0235100-00;Locus_id=Os06g0235100;Oryzabase Gene Symbol Synonym(s)=OsTBL44%2C TBL44;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 44;Note=Hypothetical conserved gene.;Transcript_evidence=EU974004 (DDBJ);ORF_evidence=Q67V92 (UniProt);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);Oryzabase=21499;TENOR=Os06t0235100-00;KEGG=Os06t0235100-00
Chr06	irgsp1_rep	CDS	7037048	7038406	.	-	0	Parent=Os06t0235100-00
Chr06	irgsp1_rep	three_prime_UTR	7037047	7037047	.	-	.	Parent=Os06t0235100-00
Chr06	irgsp1_rep	mRNA	7043614	7045626	.	-	.	ID=Os06t0235200-01;Name=Os06t0235200-01;Locus_id=Os06g0235200;Oryzabase Gene Symbol Synonym(s)=OsTBL40%2C TBL40;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 40;Note=Protein of unknown function DUF231 domain containing protein.;Transcript_evidence=AK240937 (DDBJ%2C Best hit);ORF_evidence=NP_001057240.2 (RefSeq);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=J065041L24;Oryzabase=21495;TENOR=Os06t0235200-01;KEGG=Os06t0235200-01
Chr06	irgsp1_rep	five_prime_UTR	7045543	7045626	.	-	.	Parent=Os06t0235200-01
Chr06	irgsp1_rep	CDS	7045245	7045542	.	-	0	Parent=Os06t0235200-01
Chr06	irgsp1_rep	CDS	7043884	7044992	.	-	2	Parent=Os06t0235200-01
Chr06	irgsp1_rep	three_prime_UTR	7043614	7043883	.	-	.	Parent=Os06t0235200-01
Chr06	irgsp1_rep	mRNA	7047260	7052737	.	+	.	ID=Os06t0235300-01;Name=Os06t0235300-01;Locus_id=Os06g0235300;Note=ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C nucleotide-binding domain containing protein.;Transcript_evidence=AK066631 (DDBJ%2C Best hit);ORF_evidence=B9FSD9 (UniProt);NIAS_FLcDNA=J013072F13;Expression=AK066631;TENOR=Os06t0235300-01;KEGG=Os06t0235300-01
Chr06	irgsp1_rep	five_prime_UTR	7047260	7047516	.	+	.	Parent=Os06t0235300-01
Chr06	irgsp1_rep	five_prime_UTR	7048137	7048173	.	+	.	Parent=Os06t0235300-01
Chr06	irgsp1_rep	CDS	7048174	7048233	.	+	0	Parent=Os06t0235300-01
Chr06	irgsp1_rep	CDS	7049240	7050418	.	+	0	Parent=Os06t0235300-01
Chr06	irgsp1_rep	CDS	7050961	7052712	.	+	0	Parent=Os06t0235300-01
Chr06	irgsp1_rep	three_prime_UTR	7052713	7052737	.	+	.	Parent=Os06t0235300-01
Chr06	irgsp1_rep	mRNA	7055731	7056204	.	+	.	ID=Os06t0235400-01;Name=Os06t0235400-01;Locus_id=Os06g0235400;Note=Hypothetical conserved gene.;Transcript_evidence=AK060231 (DDBJ%2C Best hit);ORF_evidence=B9FSD9 (UniProt);NIAS_FLcDNA=001-003-A03;TENOR=Os06t0235400-01;KEGG=Os06t0235400-01
Chr06	irgsp1_rep	five_prime_UTR	7055731	7055732	.	+	.	Parent=Os06t0235400-01
Chr06	irgsp1_rep	CDS	7055733	7055963	.	+	0	Parent=Os06t0235400-01
Chr06	irgsp1_rep	three_prime_UTR	7055964	7056204	.	+	.	Parent=Os06t0235400-01
Chr06	irgsp1_rep	mRNA	7057088	7060563	.	-	.	ID=Os06t0235500-01;Name=Os06t0235500-01;Locus_id=Os06g0235500;Note=Conserved hypothetical protein.;Transcript_evidence=AK121472 (DDBJ%2C Best hit);ORF_evidence=B8B4F1 (UniProt);NIAS_FLcDNA=J023148H10;TENOR=Os06t0235500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	7060483	7060563	.	-	.	Parent=Os06t0235500-01
Chr06	irgsp1_rep	CDS	7060234	7060482	.	-	0	Parent=Os06t0235500-01
Chr06	irgsp1_rep	three_prime_UTR	7060112	7060233	.	-	.	Parent=Os06t0235500-01
Chr06	irgsp1_rep	three_prime_UTR	7057524	7060029	.	-	.	Parent=Os06t0235500-01
Chr06	irgsp1_rep	three_prime_UTR	7057088	7057479	.	-	.	Parent=Os06t0235500-01
Chr06	irgsp1_rep	mRNA	7067117	7069533	.	-	.	ID=Os06t0235800-00;Name=Os06t0235800-00;Locus_id=Os06g0235800;Note=Similar to predicted protein.;Transcript_evidence=AK248752 (DDBJ);ORF_evidence=NP_198226.1 (RefSeq);GO=Biological Process: RNA processing (GO:0006396),Biological Process: mRNA processing (GO:0006397),Cellular Component: intracellular (GO:0005622),Cellular Component: nucleus (GO:0005634),Molecular Function: binding (GO:0005488);InterPro=RNA-processing protein%2C HAT helix (IPR003107),Suppressor of forked (IPR008847),Tetratricopeptide-like helical (IPR011990);TENOR=Os06t0235800-00;KEGG=Os06t0235800-00
Chr06	irgsp1_rep	five_prime_UTR	7069523	7069533	.	-	.	Parent=Os06t0235800-00
Chr06	irgsp1_rep	CDS	7067117	7069522	.	-	0	Parent=Os06t0235800-00
Chr06	irgsp1_rep	mRNA	7077881	7079552	.	+	.	ID=Os06t0235850-01;Name=Os06t0235850-01;Locus_id=Os06g0235850;Note=Conserved hypothetical protein.;Transcript_evidence=AK242020 (DDBJ%2C Best hit);ORF_evidence=NP_001174681.1 (RefSeq);NIAS_FLcDNA=J075111M01;TENOR=Os06t0235850-01;KEGG=Os06t0235850-01
Chr06	irgsp1_rep	five_prime_UTR	7077881	7078035	.	+	.	Parent=Os06t0235850-01
Chr06	irgsp1_rep	CDS	7078036	7078176	.	+	0	Parent=Os06t0235850-01
Chr06	irgsp1_rep	three_prime_UTR	7078177	7078336	.	+	.	Parent=Os06t0235850-01
Chr06	irgsp1_rep	three_prime_UTR	7078429	7079552	.	+	.	Parent=Os06t0235850-01
Chr06	irgsp1_rep	mRNA	7080825	7082583	.	-	.	ID=Os06t0235900-00;Name=Os06t0235900-00;Locus_id=Os06g0235900;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0032o13 (Wheat FLcDNA);ORF_evidence=Q67V84 (UniProt);TENOR=Os06t0235900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	7082502	7082583	.	-	.	Parent=Os06t0235900-00
Chr06	irgsp1_rep	CDS	7082399	7082501	.	-	0	Parent=Os06t0235900-00
Chr06	irgsp1_rep	CDS	7082129	7082298	.	-	2	Parent=Os06t0235900-00
Chr06	irgsp1_rep	CDS	7081965	7082043	.	-	0	Parent=Os06t0235900-00
Chr06	irgsp1_rep	CDS	7081667	7081698	.	-	2	Parent=Os06t0235900-00
Chr06	irgsp1_rep	three_prime_UTR	7081654	7081666	.	-	.	Parent=Os06t0235900-00
Chr06	irgsp1_rep	three_prime_UTR	7081043	7081110	.	-	.	Parent=Os06t0235900-00
Chr06	irgsp1_rep	three_prime_UTR	7080825	7080946	.	-	.	Parent=Os06t0235900-00
Chr06	irgsp1_rep	mRNA	7086668	7088509	.	-	.	ID=Os06t0236266-01;Name=Os06t0236266-01;Locus_id=Os06g0236266;Note=Conserved hypothetical protein.;Transcript_evidence=AK241914 (DDBJ%2C Best hit);ORF_evidence=B9FSE2 (UniProt);NIAS_FLcDNA=J075067E16;TENOR=Os06t0236266-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	7087083	7088509	.	-	.	Parent=Os06t0236266-01
Chr06	irgsp1_rep	CDS	7086678	7087082	.	-	0	Parent=Os06t0236266-01
Chr06	irgsp1_rep	three_prime_UTR	7086668	7086677	.	-	.	Parent=Os06t0236266-01
Chr06	irgsp1_rep	mRNA	7093925	7096087	.	+	.	ID=Os06t0236300-01;Name=Os06t0236300-01;Locus_id=Os06g0236300;Note=Conserved hypothetical protein.;Transcript_evidence=AK119955 (DDBJ%2C Best hit);ORF_evidence=B8B4F5 (UniProt);NIAS_FLcDNA=002-184-C09;Expression=AK119955;TENOR=Os06t0236300-01;KEGG=Os06t0236300-01
Chr06	irgsp1_rep	five_prime_UTR	7093925	7094105	.	+	.	Parent=Os06t0236300-01
Chr06	irgsp1_rep	CDS	7094106	7094579	.	+	0	Parent=Os06t0236300-01
Chr06	irgsp1_rep	CDS	7095592	7095687	.	+	0	Parent=Os06t0236300-01
Chr06	irgsp1_rep	three_prime_UTR	7095688	7096087	.	+	.	Parent=Os06t0236300-01
Chr06	irgsp1_rep	mRNA	7102964	7106821	.	-	.	ID=Os06t0236600-00;Name=Os06t0236600-00;Locus_id=Os06g0236600;CGSNL Gene Symbol=CYCD1%3B2;CGSNL Gene Name=CYCLIN-D1-2;Oryzabase Gene Symbol Synonym(s)=CycD1%3B2%2C CycD1%3Bos%3B2%2C Orysa%3BCycD1%3B2%2C Orysa%3BCYCD1%3B2;Oryzabase Gene Name Synonym(s)=D-type cyclin 1%3B2;Note=Cyclin-D1-1.;Transcript_evidence=Q67V81 (UniProt);ORF_evidence=Q67V81 (UniProt);GO=Cellular Component: nucleus (GO:0005634);InterPro=Cyclin%2C C-terminal (IPR004367),Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763);Oryzabase=13264;TENOR=Os06t0236600-00
Chr06	irgsp1_rep	CDS	7106420	7106821	.	-	0	Parent=Os06t0236600-00
Chr06	irgsp1_rep	CDS	7106236	7106322	.	-	0	Parent=Os06t0236600-00
Chr06	irgsp1_rep	CDS	7104773	7104868	.	-	0	Parent=Os06t0236600-00
Chr06	irgsp1_rep	CDS	7104488	7104689	.	-	0	Parent=Os06t0236600-00
Chr06	irgsp1_rep	CDS	7103276	7103418	.	-	2	Parent=Os06t0236600-00
Chr06	irgsp1_rep	CDS	7102964	7103125	.	-	0	Parent=Os06t0236600-00
Chr06	irgsp1_rep	mRNA	7119998	7120403	.	+	.	ID=Os06t0236900-01;Name=Os06t0236900-01;Locus_id=Os06g0236900;Note=Similar to tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33) (tRNA(m7G46)- methyltransferase) (Methyltransferase-like protein 1).;Transcript_evidence=AK060374 (DDBJ%2C Best hit);ORF_evidence=A2YB34 (UniProt);GO=Biological Process: tRNA modification (GO:0006400),Molecular Function: tRNA (guanine-N7-)-methyltransferase activity (GO:0008176);InterPro=tRNA (guanine-N-7) methyltransferase (IPR003358);NIAS_FLcDNA=001-009-C07;Expression=AK060374;TENOR=Os06t0236900-01;KEGG=Os06t0236900-01 (EC:2.1.1.33)
Chr06	irgsp1_rep	five_prime_UTR	7119998	7119999	.	+	.	Parent=Os06t0236900-01
Chr06	irgsp1_rep	CDS	7120000	7120251	.	+	0	Parent=Os06t0236900-01
Chr06	irgsp1_rep	three_prime_UTR	7120252	7120403	.	+	.	Parent=Os06t0236900-01
Chr06	irgsp1_rep	mRNA	7120876	7121491	.	-	.	ID=Os06t0237000-01;Name=Os06t0237000-01;Locus_id=Os06g0237000;Note=Conserved hypothetical protein.;Transcript_evidence=AK240757 (DDBJ%2C Best hit);ORF_evidence=Q67VD0 (UniProt);NIAS_FLcDNA=J053043B07;TENOR=Os06t0237000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	7121427	7121491	.	-	.	Parent=Os06t0237000-01
Chr06	irgsp1_rep	CDS	7121166	7121426	.	-	0	Parent=Os06t0237000-01
Chr06	irgsp1_rep	three_prime_UTR	7120876	7121165	.	-	.	Parent=Os06t0237000-01
Chr06	irgsp1_rep	mRNA	7121730	7126172	.	+	.	ID=Os06t0237100-01;Name=Os06t0237100-01;Locus_id=Os06g0237100;Note=Conserved hypothetical protein.;Transcript_evidence=AK289076 (DDBJ%2C Best hit);ORF_evidence=NP_001057246.2 (RefSeq);NIAS_FLcDNA=J090094N22;TENOR=Os06t0237100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	7121730	7125665	.	+	.	Parent=Os06t0237100-01
Chr06	irgsp1_rep	CDS	7125666	7125983	.	+	0	Parent=Os06t0237100-01
Chr06	irgsp1_rep	three_prime_UTR	7125984	7126172	.	+	.	Parent=Os06t0237100-01
Chr06	irgsp1_rep	mRNA	7128403	7133470	.	-	.	ID=Os06t0237200-00;Name=Os06t0237200-00;Locus_id=Os06g0237200;Oryzabase Gene Symbol Synonym(s)=OsPol lambda;Oryzabase Gene Name Synonym(s)=DNA polymerase lambda;Note=Similar to DNA polymerase lambda.;Transcript_evidence=AB099525 (DDBJ%2C Best hit);ORF_evidence=NP_172522.2 (RefSeq);GO=Biological Process: DNA repair (GO:0006281),Cellular Component: intracellular (GO:0005622),Molecular Function: DNA binding (GO:0003677),Molecular Function: catalytic activity (GO:0003824),Molecular Function: DNA-directed DNA polymerase activity (GO:0003887),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=BRCT (IPR001357),DNA polymerase%2C family X%2C beta-like (IPR002008),DNA-directed DNA polymerase X (IPR002054),DNA-directed DNA polymerase%2C family X%2C beta-like%2C N-terminal (IPR010996),DNA polymerase lambda%2C fingers domain (IPR018944),DNA polymerase family X%2C binding site (IPR019843),DNA polymerase family X (IPR022312);Oryzabase=14698;Expression=AB099525;TENOR=Os06t0237200-00;KEGG=Os06t0237200-00 (EC:2.7.7.7%2C EC:4.2.99.-)
Chr06	irgsp1_rep	five_prime_UTR	7133470	7133470	.	-	.	Parent=Os06t0237200-00
Chr06	irgsp1_rep	CDS	7133380	7133469	.	-	0	Parent=Os06t0237200-00
Chr06	irgsp1_rep	CDS	7133140	7133292	.	-	0	Parent=Os06t0237200-00
Chr06	irgsp1_rep	CDS	7132526	7132867	.	-	0	Parent=Os06t0237200-00
Chr06	irgsp1_rep	CDS	7131990	7132083	.	-	0	Parent=Os06t0237200-00
Chr06	irgsp1_rep	CDS	7131758	7131888	.	-	2	Parent=Os06t0237200-00
Chr06	irgsp1_rep	CDS	7131358	7131420	.	-	0	Parent=Os06t0237200-00
Chr06	irgsp1_rep	CDS	7131089	7131268	.	-	0	Parent=Os06t0237200-00
Chr06	irgsp1_rep	CDS	7130932	7130985	.	-	0	Parent=Os06t0237200-00
Chr06	irgsp1_rep	CDS	7130425	7130513	.	-	0	Parent=Os06t0237200-00
Chr06	irgsp1_rep	CDS	7129988	7130078	.	-	1	Parent=Os06t0237200-00
Chr06	irgsp1_rep	CDS	7129179	7129259	.	-	0	Parent=Os06t0237200-00
Chr06	irgsp1_rep	CDS	7128756	7128823	.	-	0	Parent=Os06t0237200-00
Chr06	irgsp1_rep	CDS	7128577	7128661	.	-	1	Parent=Os06t0237200-00
Chr06	irgsp1_rep	CDS	7128403	7128501	.	-	0	Parent=Os06t0237200-00
Chr06	irgsp1_rep	mRNA	7133968	7140003	.	-	.	ID=Os06t0237300-01;Name=Os06t0237300-01;Locus_id=Os06g0237300;Note=Similar to LIM domain protein WLIM-1.;Transcript_evidence=AK102383 (DDBJ%2C Best hit);ORF_evidence=B8B4F7 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C LIM-type (IPR001781);NIAS_FLcDNA=J033092C12;Expression=AK102383;TENOR=Os06t0237300-01;KEGG=Os06t0237300-01
Chr06	irgsp1_rep	five_prime_UTR	7139756	7140003	.	-	.	Parent=Os06t0237300-01
Chr06	irgsp1_rep	CDS	7139612	7139755	.	-	0	Parent=Os06t0237300-01
Chr06	irgsp1_rep	CDS	7138678	7138774	.	-	0	Parent=Os06t0237300-01
Chr06	irgsp1_rep	CDS	7138507	7138550	.	-	2	Parent=Os06t0237300-01
Chr06	irgsp1_rep	CDS	7138284	7138370	.	-	0	Parent=Os06t0237300-01
Chr06	irgsp1_rep	CDS	7134131	7137670	.	-	0	Parent=Os06t0237300-01
Chr06	irgsp1_rep	three_prime_UTR	7133968	7134130	.	-	.	Parent=Os06t0237300-01
Chr06	irgsp1_rep	mRNA	7144218	7146074	.	-	.	ID=Os06t0237400-01;Name=Os06t0237400-01;Locus_id=Os06g0237400;Note=Similar to xyloglucan endotransglucosylase/hydrolase protein 1.;Transcript_evidence=AK242490 (DDBJ%2C Best hit);ORF_evidence=NP_001150467.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: cellular glucan metabolic process (GO:0006073),Cellular Component: cell wall (GO:0005618),Cellular Component: apoplast (GO:0048046),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762);InterPro=Glycoside hydrolase%2C family 16 (IPR000757),Beta-glucanase (IPR008264),Concanavalin A-like lectin/glucanase (IPR008985),Xyloglucan endo-transglycosylase%2C C-terminal (IPR010713),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Xyloglucan endotransglucosylase/hydrolase (IPR016455);NIAS_FLcDNA=J080306N24;TENOR=Os06t0237400-01;KEGG=Os06t0237400-01
Chr06	irgsp1_rep	five_prime_UTR	7146046	7146074	.	-	.	Parent=Os06t0237400-01
Chr06	irgsp1_rep	CDS	7145829	7146045	.	-	0	Parent=Os06t0237400-01
Chr06	irgsp1_rep	CDS	7145584	7145684	.	-	2	Parent=Os06t0237400-01
Chr06	irgsp1_rep	CDS	7145236	7145435	.	-	0	Parent=Os06t0237400-01
Chr06	irgsp1_rep	CDS	7144531	7144936	.	-	1	Parent=Os06t0237400-01
Chr06	irgsp1_rep	three_prime_UTR	7144218	7144530	.	-	.	Parent=Os06t0237400-01
Chr06	irgsp1_rep	mRNA	7148668	7155342	.	-	.	ID=Os06t0237502-00;Name=Os06t0237502-00;Locus_id=Os06g0237502;Note=Similar to EMB2004.;Transcript_evidence=tplb0045b06 (Wheat FLcDNA);ORF_evidence=XP_002889813.1 (RefSeq);InterPro=Leucine-rich repeat%2C ribonuclease inhibitor subtype (IPR003590);TENOR=Os06t0237502-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	7155288	7155342	.	-	.	Parent=Os06t0237502-00
Chr06	irgsp1_rep	CDS	7154933	7155287	.	-	0	Parent=Os06t0237502-00
Chr06	irgsp1_rep	CDS	7154093	7154299	.	-	2	Parent=Os06t0237502-00
Chr06	irgsp1_rep	CDS	7153916	7153974	.	-	2	Parent=Os06t0237502-00
Chr06	irgsp1_rep	CDS	7153631	7153768	.	-	0	Parent=Os06t0237502-00
Chr06	irgsp1_rep	CDS	7153156	7153230	.	-	0	Parent=Os06t0237502-00
Chr06	irgsp1_rep	CDS	7152971	7153054	.	-	0	Parent=Os06t0237502-00
Chr06	irgsp1_rep	CDS	7152786	7152847	.	-	0	Parent=Os06t0237502-00
Chr06	irgsp1_rep	CDS	7152573	7152642	.	-	1	Parent=Os06t0237502-00
Chr06	irgsp1_rep	CDS	7151358	7151433	.	-	0	Parent=Os06t0237502-00
Chr06	irgsp1_rep	CDS	7151143	7151273	.	-	2	Parent=Os06t0237502-00
Chr06	irgsp1_rep	CDS	7150555	7150614	.	-	0	Parent=Os06t0237502-00
Chr06	irgsp1_rep	CDS	7149831	7149905	.	-	0	Parent=Os06t0237502-00
Chr06	irgsp1_rep	CDS	7149645	7149749	.	-	0	Parent=Os06t0237502-00
Chr06	irgsp1_rep	CDS	7149472	7149567	.	-	0	Parent=Os06t0237502-00
Chr06	irgsp1_rep	CDS	7149309	7149389	.	-	0	Parent=Os06t0237502-00
Chr06	irgsp1_rep	CDS	7149106	7149207	.	-	0	Parent=Os06t0237502-00
Chr06	irgsp1_rep	CDS	7148961	7149029	.	-	0	Parent=Os06t0237502-00
Chr06	irgsp1_rep	three_prime_UTR	7148668	7148960	.	-	.	Parent=Os06t0237502-00
Chr06	irgsp1_rep	mRNA	7157777	7158879	.	-	.	ID=Os06t0237600-00;Name=Os06t0237600-00;Locus_id=Os06g0237600;Oryzabase Gene Symbol Synonym(s)=prx76;Oryzabase Gene Name Synonym(s)=class III peroxidase 76;Note=Haem peroxidase family protein.;Transcript_evidence=FP096398 (DDBJ);ORF_evidence=NP_001151254.1 (RefSeq);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);Oryzabase=14599;TENOR=Os06t0237600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	7158823	7158879	.	-	.	Parent=Os06t0237600-00
Chr06	irgsp1_rep	CDS	7157839	7158822	.	-	0	Parent=Os06t0237600-00
Chr06	irgsp1_rep	three_prime_UTR	7157777	7157838	.	-	.	Parent=Os06t0237600-00
Chr06	irgsp1_rep	mRNA	7160043	7161351	.	-	.	ID=Os06t0237800-01;Name=Os06t0237800-01;Locus_id=Os06g0237800;Oryzabase Gene Symbol Synonym(s)=OsDjC54;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C54;Note=Similar to chaperone protein dnaJ 16.;Transcript_evidence=AK288041 (DDBJ%2C Best hit);ORF_evidence=NP_001149722.1 (RefSeq);NIAS_FLcDNA=J075144F07;Oryzabase=12211;TENOR=Os06t0237800-01;KEGG=Os06t0237800-01
Chr06	irgsp1_rep	CDS	7161202	7161351	.	-	0	Parent=Os06t0237800-01
Chr06	irgsp1_rep	CDS	7161053	7161106	.	-	0	Parent=Os06t0237800-01
Chr06	irgsp1_rep	CDS	7160578	7160859	.	-	0	Parent=Os06t0237800-01
Chr06	irgsp1_rep	three_prime_UTR	7160573	7160577	.	-	.	Parent=Os06t0237800-01
Chr06	irgsp1_rep	three_prime_UTR	7160043	7160487	.	-	.	Parent=Os06t0237800-01
Chr06	irgsp1_rep	mRNA	7167485	7172653	.	-	.	ID=Os06t0237900-00;Name=Os06t0237900-00;Locus_id=Os06g0237900;Note=Conserved hypothetical protein.;Transcript_evidence=FP100310 (DDBJ);ORF_evidence=Q67VC2 (UniProt);TENOR=Os06t0237900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	7172115	7172653	.	-	0	Parent=Os06t0237900-00
Chr06	irgsp1_rep	CDS	7171961	7172030	.	-	1	Parent=Os06t0237900-00
Chr06	irgsp1_rep	three_prime_UTR	7171839	7171960	.	-	.	Parent=Os06t0237900-00
Chr06	irgsp1_rep	three_prime_UTR	7171030	7171086	.	-	.	Parent=Os06t0237900-00
Chr06	irgsp1_rep	three_prime_UTR	7170684	7170939	.	-	.	Parent=Os06t0237900-00
Chr06	irgsp1_rep	three_prime_UTR	7169223	7169307	.	-	.	Parent=Os06t0237900-00
Chr06	irgsp1_rep	three_prime_UTR	7167485	7167557	.	-	.	Parent=Os06t0237900-00
Chr06	irgsp1_rep	mRNA	7171747	7172507	.	+	.	ID=Os06t0237950-00;Name=Os06t0237950-00;Locus_id=Os06g0237950;Note=Conserved hypothetical protein.;Transcript_evidence=EU974613 (DDBJ);ORF_evidence=NP_001146455.1 (RefSeq);TENOR=Os06t0237950-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	7171747	7171776	.	+	.	Parent=Os06t0237950-00
Chr06	irgsp1_rep	CDS	7171777	7172148	.	+	0	Parent=Os06t0237950-00
Chr06	irgsp1_rep	three_prime_UTR	7172149	7172507	.	+	.	Parent=Os06t0237950-00
Chr06	irgsp1_rep	mRNA	7181620	7183510	.	+	.	ID=Os06t0238000-00;Name=Os06t0238000-00;Locus_id=Os06g0238000;Oryzabase Gene Symbol Synonym(s)=OsPUB20;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 20%2C U-box protein 20;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=FP093715 (DDBJ);ORF_evidence=NP_001057254.1 (RefSeq);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),U box domain (IPR003613),Armadillo-like helical (IPR011989),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Armadillo-type fold (IPR016024);Oryzabase=17812;TENOR=Os06t0238000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	7181620	7181701	.	+	.	Parent=Os06t0238000-00
Chr06	irgsp1_rep	CDS	7181702	7183258	.	+	0	Parent=Os06t0238000-00
Chr06	irgsp1_rep	three_prime_UTR	7183259	7183510	.	+	.	Parent=Os06t0238000-00
Chr06	irgsp1_rep	mRNA	7186601	7188076	.	+	.	ID=Os06t0238200-00;Name=Os06t0238200-00;Locus_id=Os06g0238200;Oryzabase Gene Symbol Synonym(s)=OsPUB19;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 19%2C U-box protein 19;Note=Similar to ubiquitin-protein ligase.;Transcript_evidence=AK354559 (DDBJ);ORF_evidence=NP_001147466.1 (RefSeq);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),U box domain (IPR003613),Armadillo-like helical (IPR011989),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Armadillo-type fold (IPR016024);Oryzabase=17811;TENOR=Os06t0238200-00
Chr06	irgsp1_rep	CDS	7186601	7188076	.	+	0	Parent=Os06t0238200-00
Chr06	irgsp1_rep	mRNA	7188427	7191440	.	-	.	ID=Os06t0238300-01;Name=Os06t0238300-01;Locus_id=Os06g0238300;Note=FMN-binding split barrel domain containing protein.;Transcript_evidence=AK107758 (DDBJ%2C Best hit);ORF_evidence=NP_001148752.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FMN-binding split barrel-related (IPR009002),FMN-binding split barrel (IPR012349),Cellular repressor of E1A-stimulated genes (CREG) (IPR014631);NIAS_FLcDNA=002-133-A06;Expression=AK107758;TENOR=Os06t0238300-01;KEGG=Os06t0238300-01
Chr06	irgsp1_rep	five_prime_UTR	7191280	7191440	.	-	.	Parent=Os06t0238300-01
Chr06	irgsp1_rep	CDS	7191095	7191279	.	-	0	Parent=Os06t0238300-01
Chr06	irgsp1_rep	CDS	7190123	7190158	.	-	1	Parent=Os06t0238300-01
Chr06	irgsp1_rep	CDS	7189824	7190025	.	-	1	Parent=Os06t0238300-01
Chr06	irgsp1_rep	CDS	7188888	7188966	.	-	0	Parent=Os06t0238300-01
Chr06	irgsp1_rep	CDS	7188680	7188797	.	-	2	Parent=Os06t0238300-01
Chr06	irgsp1_rep	CDS	7188558	7188585	.	-	1	Parent=Os06t0238300-01
Chr06	irgsp1_rep	three_prime_UTR	7188427	7188557	.	-	.	Parent=Os06t0238300-01
Chr06	irgsp1_rep	mRNA	7203993	7205520	.	+	.	ID=Os06t0238600-00;Name=Os06t0238600-00;Locus_id=Os06g0238600;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q67VB6 (UniProt);TENOR=Os06t0238600-00
Chr06	irgsp1_rep	CDS	7203993	7204053	.	+	0	Parent=Os06t0238600-00
Chr06	irgsp1_rep	CDS	7205267	7205520	.	+	2	Parent=Os06t0238600-00
Chr06	irgsp1_rep	mRNA	7211073	7212272	.	-	.	ID=Os06t0238700-00;Name=Os06t0238700-00;Locus_id=Os06g0238700;Oryzabase Gene Symbol Synonym(s)=OsWD40-127;Note=WD40 repeat domain containing protein.;Transcript_evidence=AK363468 (DDBJ);ORF_evidence=NP_001057256.2 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);Oryzabase=10808;TENOR=Os06t0238700-00
Chr06	irgsp1_rep	CDS	7211073	7212272	.	-	0	Parent=Os06t0238700-00
Chr06	irgsp1_rep	mRNA	7218853	7220283	.	-	.	ID=Os06t0238900-01;Name=Os06t0238900-01;Locus_id=Os06g0238900;Note=Protein of unknown function DUF716 family protein.;Transcript_evidence=AK106064 (DDBJ%2C Best hit);ORF_evidence=NP_001152287.1 (RefSeq);InterPro=Protein of unknown function DUF716%2C TMEM45 (IPR006904);NIAS_FLcDNA=001-206-G08;Expression=AK106064;TENOR=Os06t0238900-01;KEGG=Os06t0238900-01
Chr06	irgsp1_rep	five_prime_UTR	7220066	7220283	.	-	.	Parent=Os06t0238900-01
Chr06	irgsp1_rep	CDS	7219136	7220065	.	-	0	Parent=Os06t0238900-01
Chr06	irgsp1_rep	three_prime_UTR	7218853	7219135	.	-	.	Parent=Os06t0238900-01
Chr06	irgsp1_rep	mRNA	7221749	7224408	.	+	.	ID=Os06t0239000-01;Name=Os06t0239000-01;Locus_id=Os06g0239000;Note=Similar to Glucose-inhibited division protein B-like protein.;Transcript_evidence=AK071932 (DDBJ%2C Best hit);ORF_evidence=Q8L8R7 (UniProt);GO=Biological Process: rRNA processing (GO:0006364),Cellular Component: cytoplasm (GO:0005737),Molecular Function: rRNA methyltransferase activity (GO:0008649);InterPro=rRNA small subunit methyltransferase G (IPR003682);NIAS_FLcDNA=J013086D06;Expression=AK071932;TENOR=Os06t0239000-01;KEGG=Os06t0239000-01 (EC:2.1.-.-)
Chr06	irgsp1_rep	five_prime_UTR	7221749	7221989	.	+	.	Parent=Os06t0239000-01
Chr06	irgsp1_rep	five_prime_UTR	7222040	7222116	.	+	.	Parent=Os06t0239000-01
Chr06	irgsp1_rep	five_prime_UTR	7222231	7222233	.	+	.	Parent=Os06t0239000-01
Chr06	irgsp1_rep	CDS	7222234	7222411	.	+	0	Parent=Os06t0239000-01
Chr06	irgsp1_rep	CDS	7222537	7222646	.	+	2	Parent=Os06t0239000-01
Chr06	irgsp1_rep	CDS	7223011	7223058	.	+	0	Parent=Os06t0239000-01
Chr06	irgsp1_rep	three_prime_UTR	7223059	7223094	.	+	.	Parent=Os06t0239000-01
Chr06	irgsp1_rep	three_prime_UTR	7223162	7223229	.	+	.	Parent=Os06t0239000-01
Chr06	irgsp1_rep	three_prime_UTR	7223312	7223378	.	+	.	Parent=Os06t0239000-01
Chr06	irgsp1_rep	three_prime_UTR	7223887	7223973	.	+	.	Parent=Os06t0239000-01
Chr06	irgsp1_rep	three_prime_UTR	7224047	7224408	.	+	.	Parent=Os06t0239000-01
Chr06	irgsp1_rep	mRNA	7224948	7226317	.	+	.	ID=Os06t0239100-01;Name=Os06t0239100-01;Locus_id=Os06g0239100;Note=Peptidase M10A and M12B%2C matrixin and adamalysin family protein.;Transcript_evidence=AK287609 (DDBJ%2C Best hit);ORF_evidence=NP_001151749.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Biological Process: metabolic process (GO:0008152),Cellular Component: extracellular matrix (GO:0031012),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: metallopeptidase activity (GO:0008237),Molecular Function: zinc ion binding (GO:0008270);InterPro=Peptidase M10%2C metallopeptidase (IPR001818),Peptidoglycan binding-like (IPR002477),Peptidase%2C metallopeptidase (IPR006026),Peptidase M10A%2C matrix metallopeptidase (IPR021190),Metallopeptidase%2C catalytic domain (IPR024079);NIAS_FLcDNA=J065058I05;TENOR=Os06t0239100-01;KEGG=Os06t0239100-01
Chr06	irgsp1_rep	five_prime_UTR	7224948	7224983	.	+	.	Parent=Os06t0239100-01
Chr06	irgsp1_rep	CDS	7224984	7226099	.	+	0	Parent=Os06t0239100-01
Chr06	irgsp1_rep	three_prime_UTR	7226100	7226317	.	+	.	Parent=Os06t0239100-01
Chr06	irgsp1_rep	mRNA	7230221	7230662	.	+	.	ID=Os06t0239200-00;Name=Os06t0239200-00;Locus_id=Os06g0239200;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0002c24 (Wheat FLcDNA);ORF_evidence=NP_001057260.1 (RefSeq);TENOR=Os06t0239200-00;KEGG=Os06t0239200-00
Chr06	irgsp1_rep	five_prime_UTR	7230221	7230232	.	+	.	Parent=Os06t0239200-00
Chr06	irgsp1_rep	CDS	7230233	7230514	.	+	0	Parent=Os06t0239200-00
Chr06	irgsp1_rep	three_prime_UTR	7230515	7230662	.	+	.	Parent=Os06t0239200-00
Chr06	irgsp1_rep	mRNA	7231572	7235330	.	-	.	ID=Os06t0239300-00;Name=Os06t0239300-00;Locus_id=Os06g0239300;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Oligopeptide transporter domain containing protein.;Transcript_evidence=AK367842 (DDBJ);ORF_evidence=Q67VA9 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);Oryzabase=23667;TENOR=Os06t0239300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	7235034	7235330	.	-	0	Parent=Os06t0239300-00
Chr06	irgsp1_rep	CDS	7232476	7233005	.	-	0	Parent=Os06t0239300-00
Chr06	irgsp1_rep	CDS	7231572	7232343	.	-	1	Parent=Os06t0239300-00
Chr06	irgsp1_rep	mRNA	7231710	7235235	.	+	.	ID=Os06t0239400-00;Name=Os06t0239400-00;Locus_id=Os06g0239400;Note=Hypothetical protein.;Transcript_evidence=tplb0058e01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0239400-00
Chr06	irgsp1_rep	CDS	7231710	7232326	.	+	0	Parent=Os06t0239400-00
Chr06	irgsp1_rep	CDS	7232436	7232439	.	+	1	Parent=Os06t0239400-00
Chr06	irgsp1_rep	three_prime_UTR	7232440	7232977	.	+	.	Parent=Os06t0239400-00
Chr06	irgsp1_rep	three_prime_UTR	7235052	7235235	.	+	.	Parent=Os06t0239400-00
Chr06	irgsp1_rep	mRNA	7247884	7250998	.	+	.	ID=Os06t0239500-01;Name=Os06t0239500-01;Locus_id=Os06g0239500;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=TGF-beta receptor%2C type I/II extracellular region family protein.;Transcript_evidence=AK064959 (DDBJ%2C Best hit);ORF_evidence=NP_196998.1 (RefSeq);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J013001A13;Oryzabase=23668;Expression=AK064959;TENOR=Os06t0239500-01;KEGG=Os06t0239500-01
Chr06	irgsp1_rep	five_prime_UTR	7247884	7247922	.	+	.	Parent=Os06t0239500-01
Chr06	irgsp1_rep	CDS	7247923	7247992	.	+	0	Parent=Os06t0239500-01
Chr06	irgsp1_rep	CDS	7248066	7248283	.	+	2	Parent=Os06t0239500-01
Chr06	irgsp1_rep	CDS	7249206	7249741	.	+	0	Parent=Os06t0239500-01
Chr06	irgsp1_rep	CDS	7250098	7250881	.	+	1	Parent=Os06t0239500-01
Chr06	irgsp1_rep	three_prime_UTR	7250882	7250998	.	+	.	Parent=Os06t0239500-01
Chr06	irgsp1_rep	mRNA	7258222	7259219	.	+	.	ID=Os06t0239600-01;Name=Os06t0239600-01;Locus_id=Os06g0239600;Note=Similar to F28N24.11 protein.;Transcript_evidence=AK062674 (DDBJ%2C Best hit);ORF_evidence=Q9LP49 (UniProt);NIAS_FLcDNA=001-105-G07;TENOR=Os06t0239600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	7258222	7258272	.	+	.	Parent=Os06t0239600-01
Chr06	irgsp1_rep	CDS	7258273	7258536	.	+	0	Parent=Os06t0239600-01
Chr06	irgsp1_rep	three_prime_UTR	7258537	7259219	.	+	.	Parent=Os06t0239600-01
Chr06	irgsp1_rep	mRNA	7260409	7263955	.	+	.	ID=Os06t0239700-01;Name=Os06t0239700-01;Locus_id=Os06g0239700;Note=Conserved hypothetical protein.;Transcript_evidence=AK241900 (DDBJ%2C Best hit);ORF_evidence=B9FSF6 (UniProt);NIAS_FLcDNA=J075023L05;TENOR=Os06t0239700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	7260409	7260410	.	+	.	Parent=Os06t0239700-01
Chr06	irgsp1_rep	CDS	7260411	7260802	.	+	0	Parent=Os06t0239700-01
Chr06	irgsp1_rep	CDS	7262677	7262801	.	+	1	Parent=Os06t0239700-01
Chr06	irgsp1_rep	CDS	7262875	7262966	.	+	2	Parent=Os06t0239700-01
Chr06	irgsp1_rep	CDS	7263397	7263483	.	+	0	Parent=Os06t0239700-01
Chr06	irgsp1_rep	CDS	7263604	7263714	.	+	0	Parent=Os06t0239700-01
Chr06	irgsp1_rep	three_prime_UTR	7263715	7263955	.	+	.	Parent=Os06t0239700-01
Chr06	irgsp1_rep	mRNA	7267279	7269232	.	-	.	ID=Os06t0240001-01;Name=Os06t0240001-01;Locus_id=Os06g0240001;Note=Conserved hypothetical protein.;Transcript_evidence=AK242782 (DDBJ%2C Best hit);ORF_evidence=B9FSF7 (UniProt);NIAS_FLcDNA=J090056B18;TENOR=Os06t0240001-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	7268601	7269232	.	-	.	Parent=Os06t0240001-01
Chr06	irgsp1_rep	CDS	7268094	7268600	.	-	0	Parent=Os06t0240001-01
Chr06	irgsp1_rep	three_prime_UTR	7267279	7268093	.	-	.	Parent=Os06t0240001-01
Chr06	irgsp1_rep	mRNA	7280305	7280575	.	-	.	ID=Os06t0240025-00;Name=Os06t0240025-00;Locus_id=Os06g0240025;Note=Non-protein coding transcript.;Transcript_evidence=AJ010976 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0240025-00
Chr06	irgsp1_rep	exon	7280305	7280575	.	-	.	Parent=Os06t0240025-00
Chr06	irgsp1_rep	mRNA	7280549	7282975	.	+	.	ID=Os06t0240050-00;Name=Os06t0240050-00;Locus_id=Os06g0240050;Oryzabase Gene Symbol Synonym(s)=OsBURP09%2C OsBURP9;Oryzabase Gene Name Synonym(s)=BURP domain-containing protein 9;Note=BURP domain-containing protein 9.;Transcript_evidence=Q67VD7 (UniProt);ORF_evidence=Q67VD7 (UniProt);InterPro=BURP (IPR004873);Oryzabase=15048;TENOR=Os06t0240050-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	7280549	7280624	.	+	0	Parent=Os06t0240050-00
Chr06	irgsp1_rep	CDS	7280725	7280838	.	+	2	Parent=Os06t0240050-00
Chr06	irgsp1_rep	CDS	7281064	7281630	.	+	2	Parent=Os06t0240050-00
Chr06	irgsp1_rep	CDS	7282230	7282975	.	+	2	Parent=Os06t0240050-00
Chr06	irgsp1_rep	mRNA	7287849	7290591	.	+	.	ID=Os06t0240400-01;Name=Os06t0240400-01;Locus_id=Os06g0240400;Note=Conserved hypothetical protein.;Transcript_evidence=AK111305 (DDBJ%2C Best hit);ORF_evidence=Q9AYE7 (UniProt);NIAS_FLcDNA=002-181-B08;TENOR=Os06t0240400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	7287849	7288102	.	+	.	Parent=Os06t0240400-01
Chr06	irgsp1_rep	five_prime_UTR	7289762	7289845	.	+	.	Parent=Os06t0240400-01
Chr06	irgsp1_rep	five_prime_UTR	7290242	7290258	.	+	.	Parent=Os06t0240400-01
Chr06	irgsp1_rep	CDS	7290259	7290444	.	+	0	Parent=Os06t0240400-01
Chr06	irgsp1_rep	three_prime_UTR	7290445	7290591	.	+	.	Parent=Os06t0240400-01
Chr06	irgsp1_rep	mRNA	7292717	7295883	.	-	.	ID=Os06t0240600-00;Name=Os06t0240600-00;Locus_id=Os06g0240600;Note=Similar to OSIGBa0132O24.2 protein.;Transcript_evidence=BT061319 (DDBJ);ORF_evidence=Q01MB5 (UniProt);InterPro=Transposase%2C Ptta/En/Spm%2C plant (IPR004252);TENOR=Os06t0240600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	7295668	7295883	.	-	.	Parent=Os06t0240600-00
Chr06	irgsp1_rep	five_prime_UTR	7295200	7295554	.	-	.	Parent=Os06t0240600-00
Chr06	irgsp1_rep	five_prime_UTR	7294693	7294741	.	-	.	Parent=Os06t0240600-00
Chr06	irgsp1_rep	CDS	7294501	7294692	.	-	0	Parent=Os06t0240600-00
Chr06	irgsp1_rep	CDS	7294167	7294379	.	-	0	Parent=Os06t0240600-00
Chr06	irgsp1_rep	CDS	7293989	7294081	.	-	0	Parent=Os06t0240600-00
Chr06	irgsp1_rep	CDS	7293440	7293545	.	-	0	Parent=Os06t0240600-00
Chr06	irgsp1_rep	CDS	7293315	7293355	.	-	2	Parent=Os06t0240600-00
Chr06	irgsp1_rep	three_prime_UTR	7292717	7293314	.	-	.	Parent=Os06t0240600-00
Chr06	irgsp1_rep	mRNA	7298524	7299456	.	-	.	ID=Os06t0240700-00;Name=Os06t0240700-00;Locus_id=Os06g0240700;Note=Similar to OSIGBa0132O24.3 protein.;Transcript_evidence=EU951279 (DDBJ);ORF_evidence=Q01MB4 (UniProt);TENOR=Os06t0240700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	7298665	7299456	.	-	0	Parent=Os06t0240700-00
Chr06	irgsp1_rep	three_prime_UTR	7298524	7298664	.	-	.	Parent=Os06t0240700-00
Chr06	irgsp1_rep	mRNA	7306160	7307551	.	-	.	ID=Os06t0240800-00;Name=Os06t0240800-00;Locus_id=Os06g0240800;Note=Similar to OSIGBa0132I10.2 protein.;Transcript_evidence=CT841832 (DDBJ%2C Best hit);ORF_evidence=Q01MZ9 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Plant methyltransferase dimerisation (IPR012967);TENOR=Os06t0240800-00;KEGG=Os06t0240800-00
Chr06	irgsp1_rep	five_prime_UTR	7307548	7307551	.	-	.	Parent=Os06t0240800-00
Chr06	irgsp1_rep	CDS	7306981	7307547	.	-	0	Parent=Os06t0240800-00
Chr06	irgsp1_rep	three_prime_UTR	7306731	7306980	.	-	.	Parent=Os06t0240800-00
Chr06	irgsp1_rep	three_prime_UTR	7306160	7306608	.	-	.	Parent=Os06t0240800-00
Chr06	irgsp1_rep	mRNA	7325616	7327449	.	-	.	ID=Os06t0241100-01;Name=Os06t0241100-01;Locus_id=Os06g0241100;Oryzabase Gene Name Synonym(s)=protein kinase;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK068992 (DDBJ%2C Best hit),AK240642 (DDBJ%2C Best hit);ORF_evidence=Q01KM0 (UniProt);NIAS_FLcDNA=J023002G08;Oryzabase=21900;TENOR=Os06t0241100-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	7327257	7327449	.	-	.	Parent=Os06t0241100-01
Chr06	irgsp1_rep	CDS	7327172	7327256	.	-	0	Parent=Os06t0241100-01
Chr06	irgsp1_rep	CDS	7325792	7327041	.	-	2	Parent=Os06t0241100-01
Chr06	irgsp1_rep	three_prime_UTR	7325616	7325791	.	-	.	Parent=Os06t0241100-01
Chr06	irgsp1_rep	mRNA	7333167	7336677	.	+	.	ID=Os06t0241200-01;Name=Os06t0241200-01;Locus_id=Os06g0241200;Note=Conserved hypothetical protein.;Transcript_evidence=AK100783 (DDBJ%2C Best hit);ORF_evidence=B9FSG1 (UniProt);NIAS_FLcDNA=J023120L07;TENOR=Os06t0241200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	7333167	7333277	.	+	.	Parent=Os06t0241200-01
Chr06	irgsp1_rep	CDS	7333278	7333634	.	+	0	Parent=Os06t0241200-01
Chr06	irgsp1_rep	three_prime_UTR	7333635	7333715	.	+	.	Parent=Os06t0241200-01
Chr06	irgsp1_rep	three_prime_UTR	7334161	7334232	.	+	.	Parent=Os06t0241200-01
Chr06	irgsp1_rep	three_prime_UTR	7334319	7334391	.	+	.	Parent=Os06t0241200-01
Chr06	irgsp1_rep	three_prime_UTR	7334506	7334530	.	+	.	Parent=Os06t0241200-01
Chr06	irgsp1_rep	three_prime_UTR	7334825	7334884	.	+	.	Parent=Os06t0241200-01
Chr06	irgsp1_rep	three_prime_UTR	7335004	7336677	.	+	.	Parent=Os06t0241200-01
Chr06	irgsp1_rep	mRNA	7341809	7344913	.	-	.	ID=Os06t0241400-01;Name=Os06t0241400-01;Locus_id=Os06g0241400;Oryzabase Gene Name Synonym(s)=SABATH methyltransferase Group A2;Note=SAM dependent carboxyl methyltransferase family protein.;Transcript_evidence=AK241207 (DDBJ%2C Best hit);ORF_evidence=D9J0Z7 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=SAM dependent carboxyl methyltransferase (IPR005299);NIAS_FLcDNA=J065122H19;Oryzabase=23388;TENOR=Os06t0241400-01;KEGG=Os06t0241400-01
Chr06	irgsp1_rep	five_prime_UTR	7344868	7344913	.	-	.	Parent=Os06t0241400-01
Chr06	irgsp1_rep	CDS	7344787	7344867	.	-	0	Parent=Os06t0241400-01
Chr06	irgsp1_rep	CDS	7343774	7344184	.	-	0	Parent=Os06t0241400-01
Chr06	irgsp1_rep	CDS	7343369	7343641	.	-	0	Parent=Os06t0241400-01
Chr06	irgsp1_rep	CDS	7342144	7342506	.	-	0	Parent=Os06t0241400-01
Chr06	irgsp1_rep	three_prime_UTR	7341809	7342143	.	-	.	Parent=Os06t0241400-01
Chr06	irgsp1_rep	mRNA	7369137	7371782	.	-	.	ID=Os06t0242000-01;Name=Os06t0242000-01;Locus_id=Os06g0242000;Oryzabase Gene Name Synonym(s)=SABATH methyltransferase Group A2;Note=Similar to benzoate carboxyl methyltransferase.;Transcript_evidence=AK241988 (DDBJ%2C Best hit);ORF_evidence=NP_001182138.1 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=SAM dependent carboxyl methyltransferase (IPR005299);NIAS_FLcDNA=J075098M10;Oryzabase=23389;TENOR=Os06t0242000-01;KEGG=Os06t0242000-01
Chr06	irgsp1_rep	five_prime_UTR	7370778	7371782	.	-	.	Parent=Os06t0242000-01
Chr06	irgsp1_rep	CDS	7370367	7370777	.	-	0	Parent=Os06t0242000-01
Chr06	irgsp1_rep	CDS	7369954	7370229	.	-	0	Parent=Os06t0242000-01
Chr06	irgsp1_rep	CDS	7369204	7369584	.	-	0	Parent=Os06t0242000-01
Chr06	irgsp1_rep	three_prime_UTR	7369137	7369203	.	-	.	Parent=Os06t0242000-01
Chr06	irgsp1_rep	mRNA	7401124	7404266	.	+	.	ID=Os06t0242600-00;Name=Os06t0242600-00;Locus_id=Os06g0242600;CGSNL Gene Symbol=CGS3;CGSNL Gene Name=CYSTATHIONINE GAMMA-SYNTHASE 3;Oryzabase Gene Symbol Synonym(s)=OsaCGS3%2C OsCGS3;Oryzabase Gene Name Synonym(s)=cystathionine gamma-synthase 3;Note=Similar to Cystathionine gamma-synthase.;Transcript_evidence=AK362180 (DDBJ);ORF_evidence=O81334 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Cys/Met metabolism%2C pyridoxal phosphate-dependent enzyme (IPR000277),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);Oryzabase=22906;TENOR=Os06t0242600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	7401124	7401579	.	+	0	Parent=Os06t0242600-00
Chr06	irgsp1_rep	CDS	7401860	7401919	.	+	0	Parent=Os06t0242600-00
Chr06	irgsp1_rep	CDS	7402011	7402302	.	+	0	Parent=Os06t0242600-00
Chr06	irgsp1_rep	CDS	7403402	7403724	.	+	2	Parent=Os06t0242600-00
Chr06	irgsp1_rep	CDS	7404144	7404155	.	+	0	Parent=Os06t0242600-00
Chr06	irgsp1_rep	three_prime_UTR	7404156	7404266	.	+	.	Parent=Os06t0242600-00
Chr06	irgsp1_rep	mRNA	7406037	7408609	.	-	.	ID=Os06t0242700-01;Name=Os06t0242700-01;Locus_id=Os06g0242700;Note=SAM dependent carboxyl methyltransferase family protein.;Transcript_evidence=AK070156 (DDBJ%2C Best hit);ORF_evidence=NP_001149207.1 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=SAM dependent carboxyl methyltransferase (IPR005299);NIAS_FLcDNA=J023043D23;Expression=AK070156;TENOR=Os06t0242700-01;KEGG=Os06t0242700-01
Chr06	irgsp1_rep	five_prime_UTR	7408531	7408609	.	-	.	Parent=Os06t0242700-01
Chr06	irgsp1_rep	CDS	7408453	7408530	.	-	0	Parent=Os06t0242700-01
Chr06	irgsp1_rep	CDS	7407565	7407993	.	-	0	Parent=Os06t0242700-01
Chr06	irgsp1_rep	three_prime_UTR	7406779	7407564	.	-	.	Parent=Os06t0242700-01
Chr06	irgsp1_rep	three_prime_UTR	7406037	7406700	.	-	.	Parent=Os06t0242700-01
Chr06	irgsp1_rep	mRNA	7419443	7423046	.	-	.	ID=Os06t0242900-01;Name=Os06t0242900-01;Locus_id=Os06g0242900;Oryzabase Gene Name Synonym(s)=SABATH methyltransferase Group A2;Note=SAM dependent carboxyl methyltransferase domain containing protein.;Transcript_evidence=AK288626 (DDBJ%2C Best hit);ORF_evidence=B8B4G6 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=SAM dependent carboxyl methyltransferase (IPR005299);NIAS_FLcDNA=J090054N03;Oryzabase=23390;TENOR=Os06t0242900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	7421094	7423046	.	-	.	Parent=Os06t0242900-01
Chr06	irgsp1_rep	CDS	7420749	7421093	.	-	0	Parent=Os06t0242900-01
Chr06	irgsp1_rep	three_prime_UTR	7419443	7420748	.	-	.	Parent=Os06t0242900-01
Chr06	irgsp1_rep	mRNA	7422540	7433115	.	+	.	ID=Os06t0243100-01;Name=Os06t0243100-01;Locus_id=Os06g0243100;Note=Non-protein coding transcript.;Transcript_evidence=AK120110 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013024D10;TENOR=Os06t0243100-01
Chr06	irgsp1_rep	exon	7422540	7422655	.	+	.	Parent=Os06t0243100-01
Chr06	irgsp1_rep	exon	7422917	7422986	.	+	.	Parent=Os06t0243100-01
Chr06	irgsp1_rep	exon	7432709	7433115	.	+	.	Parent=Os06t0243100-01
Chr06	irgsp1_rep	mRNA	7429730	7430104	.	-	.	ID=Os06t0243300-00;Name=Os06t0243300-00;Locus_id=Os06g0243300;Oryzabase Gene Name Synonym(s)=SABATH methyltransferase Group A2;Note=SAM dependent carboxyl methyltransferase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q67VG2 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=SAM dependent carboxyl methyltransferase (IPR005299);Oryzabase=23391;TENOR=Os06t0243300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	7429730	7430104	.	-	0	Parent=Os06t0243300-00
Chr06	irgsp1_rep	mRNA	7468681	7475604	.	-	.	ID=Os06t0243801-00;Name=Os06t0243801-00;Locus_id=Os06g0243801;Note=Similar to 001-045-E04%2C full insert sequence.;Transcript_evidence=BT085801 (DDBJ);ORF_evidence=B7E778 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=SAM dependent carboxyl methyltransferase (IPR005299);TENOR=Os06t0243801-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	7475530	7475604	.	-	0	Parent=Os06t0243801-00
Chr06	irgsp1_rep	CDS	7474944	7475396	.	-	0	Parent=Os06t0243801-00
Chr06	irgsp1_rep	CDS	7469224	7469448	.	-	0	Parent=Os06t0243801-00
Chr06	irgsp1_rep	three_prime_UTR	7469223	7469223	.	-	.	Parent=Os06t0243801-00
Chr06	irgsp1_rep	three_prime_UTR	7468681	7469112	.	-	.	Parent=Os06t0243801-00
Chr06	irgsp1_rep	mRNA	7479329	7482254	.	+	.	ID=Os06t0243900-01;Name=Os06t0243900-01;Locus_id=Os06g0243900;Note=Hypothetical protein.;Transcript_evidence=AK103538 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033132B20;Expression=AK103538;TENOR=Os06t0243900-01;KEGG=Os06t0243900-01
Chr06	irgsp1_rep	five_prime_UTR	7479329	7479550	.	+	.	Parent=Os06t0243900-01
Chr06	irgsp1_rep	five_prime_UTR	7479643	7479662	.	+	.	Parent=Os06t0243900-01
Chr06	irgsp1_rep	CDS	7479663	7479759	.	+	0	Parent=Os06t0243900-01
Chr06	irgsp1_rep	CDS	7481445	7481629	.	+	2	Parent=Os06t0243900-01
Chr06	irgsp1_rep	three_prime_UTR	7481630	7482254	.	+	.	Parent=Os06t0243900-01
Chr06	irgsp1_rep	mRNA	7480272	7482194	.	-	.	ID=Os06t0244000-01;Name=Os06t0244000-01;Locus_id=Os06g0244000;Oryzabase Gene Name Synonym(s)=SABATH methyltransferase Group A2;Note=Similar to anthranilic acid methyltransferase 3.;Transcript_evidence=AK062130 (DDBJ%2C Best hit),AK098988 (DDBJ%2C Best hit);ORF_evidence=NP_001182138.1 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=SAM dependent carboxyl methyltransferase (IPR005299);NIAS_FLcDNA=001-045-E04,J013096P21;Oryzabase=23392;TENOR=Os06t0244000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	7482194	7482194	.	-	.	Parent=Os06t0244000-01
Chr06	irgsp1_rep	CDS	7482044	7482193	.	-	0	Parent=Os06t0244000-01
Chr06	irgsp1_rep	CDS	7481481	7481897	.	-	0	Parent=Os06t0244000-01
Chr06	irgsp1_rep	CDS	7480866	7481135	.	-	0	Parent=Os06t0244000-01
Chr06	irgsp1_rep	CDS	7480395	7480757	.	-	0	Parent=Os06t0244000-01
Chr06	irgsp1_rep	three_prime_UTR	7480272	7480394	.	-	.	Parent=Os06t0244000-01
Chr06	irgsp1_rep	mRNA	7488066	7496627	.	+	.	ID=Os06t0244100-01;Name=Os06t0244100-01;Locus_id=Os06g0244100;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK100071 (DDBJ%2C Best hit);ORF_evidence=B8B4H1 (UniProt);NIAS_FLcDNA=J013169N13;Expression=AK100071;TENOR=Os06t0244100-01;KEGG=Os06t0244100-01
Chr06	irgsp1_rep	five_prime_UTR	7488066	7488153	.	+	.	Parent=Os06t0244100-01
Chr06	irgsp1_rep	CDS	7488154	7488660	.	+	0	Parent=Os06t0244100-01
Chr06	irgsp1_rep	CDS	7488761	7488898	.	+	0	Parent=Os06t0244100-01
Chr06	irgsp1_rep	CDS	7489836	7489915	.	+	0	Parent=Os06t0244100-01
Chr06	irgsp1_rep	CDS	7490358	7490767	.	+	1	Parent=Os06t0244100-01
Chr06	irgsp1_rep	CDS	7492833	7493017	.	+	2	Parent=Os06t0244100-01
Chr06	irgsp1_rep	CDS	7493463	7493548	.	+	0	Parent=Os06t0244100-01
Chr06	irgsp1_rep	CDS	7493824	7493957	.	+	1	Parent=Os06t0244100-01
Chr06	irgsp1_rep	CDS	7495674	7495973	.	+	2	Parent=Os06t0244100-01
Chr06	irgsp1_rep	CDS	7496182	7496369	.	+	2	Parent=Os06t0244100-01
Chr06	irgsp1_rep	three_prime_UTR	7496370	7496627	.	+	.	Parent=Os06t0244100-01
Chr06	irgsp1_rep	mRNA	7488097	7491295	.	+	.	ID=Os06t0244100-02;Name=Os06t0244100-02;Locus_id=Os06g0244100;Note=Hypothetical conserved gene.;Transcript_evidence=AK063514 (DDBJ%2C Best hit);ORF_evidence=Q654G7 (UniProt);NIAS_FLcDNA=001-116-G06;Expression=AK063514;TENOR=Os06t0244100-02;KEGG=Os06t0244100-02
Chr06	irgsp1_rep	five_prime_UTR	7488097	7488153	.	+	.	Parent=Os06t0244100-02
Chr06	irgsp1_rep	CDS	7488154	7488660	.	+	0	Parent=Os06t0244100-02
Chr06	irgsp1_rep	CDS	7488761	7488898	.	+	0	Parent=Os06t0244100-02
Chr06	irgsp1_rep	CDS	7489836	7489915	.	+	0	Parent=Os06t0244100-02
Chr06	irgsp1_rep	CDS	7490358	7490767	.	+	1	Parent=Os06t0244100-02
Chr06	irgsp1_rep	CDS	7490957	7491213	.	+	2	Parent=Os06t0244100-02
Chr06	irgsp1_rep	three_prime_UTR	7491214	7491295	.	+	.	Parent=Os06t0244100-02
Chr06	irgsp1_rep	mRNA	7498368	7500580	.	-	.	ID=Os06t0244200-00;Name=Os06t0244200-00;Locus_id=Os06g0244200;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0032o13 (Wheat FLcDNA);ORF_evidence=NP_001174690.1 (RefSeq);TENOR=Os06t0244200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	7500518	7500580	.	-	.	Parent=Os06t0244200-00
Chr06	irgsp1_rep	CDS	7500421	7500517	.	-	0	Parent=Os06t0244200-00
Chr06	irgsp1_rep	CDS	7500162	7500331	.	-	2	Parent=Os06t0244200-00
Chr06	irgsp1_rep	CDS	7499951	7500073	.	-	0	Parent=Os06t0244200-00
Chr06	irgsp1_rep	three_prime_UTR	7499950	7499950	.	-	.	Parent=Os06t0244200-00
Chr06	irgsp1_rep	three_prime_UTR	7499151	7499218	.	-	.	Parent=Os06t0244200-00
Chr06	irgsp1_rep	three_prime_UTR	7498931	7499070	.	-	.	Parent=Os06t0244200-00
Chr06	irgsp1_rep	three_prime_UTR	7498596	7498699	.	-	.	Parent=Os06t0244200-00
Chr06	irgsp1_rep	three_prime_UTR	7498368	7498490	.	-	.	Parent=Os06t0244200-00
Chr06	irgsp1_rep	mRNA	7530825	7534853	.	+	.	ID=Os06t0244700-01;Name=Os06t0244700-01;Locus_id=Os06g0244700;Note=Similar to microtubule-associated protein TORTIFOLIA1.;Transcript_evidence=AK288433 (DDBJ%2C Best hit);ORF_evidence=NP_001147492.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J090033H15;TENOR=Os06t0244700-01;KEGG=Os06t0244700-01
Chr06	irgsp1_rep	five_prime_UTR	7530825	7530953	.	+	.	Parent=Os06t0244700-01
Chr06	irgsp1_rep	CDS	7530954	7531174	.	+	0	Parent=Os06t0244700-01
Chr06	irgsp1_rep	CDS	7531442	7531736	.	+	1	Parent=Os06t0244700-01
Chr06	irgsp1_rep	CDS	7531849	7531978	.	+	0	Parent=Os06t0244700-01
Chr06	irgsp1_rep	CDS	7532281	7532828	.	+	2	Parent=Os06t0244700-01
Chr06	irgsp1_rep	CDS	7533665	7534047	.	+	0	Parent=Os06t0244700-01
Chr06	irgsp1_rep	CDS	7534401	7534410	.	+	1	Parent=Os06t0244700-01
Chr06	irgsp1_rep	three_prime_UTR	7534411	7534853	.	+	.	Parent=Os06t0244700-01
Chr06	irgsp1_rep	mRNA	7531397	7534055	.	-	.	ID=Os06t0244901-00;Name=Os06t0244901-00;Locus_id=Os06g0244901;Note=Hypothetical gene.;Transcript_evidence=BT087665 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0244901-00;KEGG=Os06t0244901-00
Chr06	irgsp1_rep	five_prime_UTR	7533644	7534055	.	-	.	Parent=Os06t0244901-00
Chr06	irgsp1_rep	five_prime_UTR	7532260	7532809	.	-	.	Parent=Os06t0244901-00
Chr06	irgsp1_rep	five_prime_UTR	7531911	7531966	.	-	.	Parent=Os06t0244901-00
Chr06	irgsp1_rep	CDS	7531852	7531910	.	-	0	Parent=Os06t0244901-00
Chr06	irgsp1_rep	CDS	7531451	7531739	.	-	1	Parent=Os06t0244901-00
Chr06	irgsp1_rep	three_prime_UTR	7531397	7531450	.	-	.	Parent=Os06t0244901-00
Chr06	irgsp1_rep	mRNA	7555243	7558430	.	-	.	ID=Os06t0245600-01;Name=Os06t0245600-01;Locus_id=Os06g0245600;CGSNL Gene Symbol=RPL1;CGSNL Gene Name=RICE PLASTICITY 1;Oryzabase Gene Name Synonym(s)=rice plasticity 1;Note=Similar to cDNA clone:J023144O06%2C full insert sequence.;Transcript_evidence=AK288112 (DDBJ%2C Best hit);ORF_evidence=NP_001057276.1 (RefSeq);NIAS_FLcDNA=J080025M02;Manual Curation=May 1%2C 2017;Oryzabase=22377;TENOR=Os06t0245600-01;KEGG=Os06t0245600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	7558215	7558430	.	-	.	Parent=Os06t0245600-01
Chr06	irgsp1_rep	five_prime_UTR	7558039	7558105	.	-	.	Parent=Os06t0245600-01
Chr06	irgsp1_rep	five_prime_UTR	7557943	7557944	.	-	.	Parent=Os06t0245600-01
Chr06	irgsp1_rep	CDS	7557887	7557942	.	-	0	Parent=Os06t0245600-01
Chr06	irgsp1_rep	CDS	7557709	7557770	.	-	1	Parent=Os06t0245600-01
Chr06	irgsp1_rep	CDS	7556530	7556762	.	-	2	Parent=Os06t0245600-01
Chr06	irgsp1_rep	CDS	7556386	7556419	.	-	0	Parent=Os06t0245600-01
Chr06	irgsp1_rep	CDS	7556187	7556315	.	-	2	Parent=Os06t0245600-01
Chr06	irgsp1_rep	CDS	7555463	7555644	.	-	2	Parent=Os06t0245600-01
Chr06	irgsp1_rep	three_prime_UTR	7555243	7555462	.	-	.	Parent=Os06t0245600-01
Chr06	irgsp1_rep	mRNA	7555463	7558367	.	-	.	ID=Os06t0245600-02;Name=Os06t0245600-02;Locus_id=Os06g0245600;RAP-DB Gene Symbol Synonym(s)=RPL1;RAP-DB Gene Name Synonym(s)=rice plasticity 1;CGSNL Gene Symbol=RPL1;CGSNL Gene Name=RICE PLASTICITY 1;Oryzabase Gene Name Synonym(s)=rice plasticity 1;Note=Regulation of phenotypic plasticity;Transcript_evidence=Inferred from literature;ORF_evidence=Q654G1;Manual Curation=May 1%2C 2017;Literature_PMID=22131052;Oryzabase=22377;Subcellular location=nucleus (GO:0005634)
Chr06	irgsp1_rep	five_prime_UTR	7558247	7558367	.	-	.	Parent=Os06t0245600-02
Chr06	irgsp1_rep	CDS	7558199	7558246	.	-	0	Parent=Os06t0245600-02
Chr06	irgsp1_rep	CDS	7558039	7558105	.	-	0	Parent=Os06t0245600-02
Chr06	irgsp1_rep	CDS	7557887	7557944	.	-	2	Parent=Os06t0245600-02
Chr06	irgsp1_rep	CDS	7557709	7557770	.	-	1	Parent=Os06t0245600-02
Chr06	irgsp1_rep	CDS	7556530	7556762	.	-	2	Parent=Os06t0245600-02
Chr06	irgsp1_rep	CDS	7556386	7556419	.	-	0	Parent=Os06t0245600-02
Chr06	irgsp1_rep	CDS	7556187	7556315	.	-	2	Parent=Os06t0245600-02
Chr06	irgsp1_rep	CDS	7555463	7555644	.	-	2	Parent=Os06t0245600-02
Chr06	irgsp1_rep	mRNA	7565169	7568366	.	-	.	ID=Os06t0245700-00;Name=Os06t0245700-00;Locus_id=Os06g0245700;Note=Similar to predicted protein.;Transcript_evidence=BT087865 (DDBJ);ORF_evidence=Q6V5C5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: mannose metabolic process (GO:0006013),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: alpha-mannosidase activity (GO:0004559),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: mannosidase activity (GO:0015923),Molecular Function: carbohydrate binding (GO:0030246),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 38%2C core (IPR000602),Glycoside hydrolase-type carbohydrate-binding (IPR011013),Glycoside hydrolase/deacetylase%2C beta/alpha-barrel (IPR011330),Glycosyl hydrolases 38%2C C-terminal (IPR011682),Glycosyl hydrolase%2C family 13%2C all-beta (IPR013780),Glycoside hydrolase%2C family 38%2C central domain (IPR015341);TENOR=Os06t0245700-00;KEGG=Os06t0245700-00 (EC:3.2.1.114)
Chr06	irgsp1_rep	CDS	7565517	7568366	.	-	0	Parent=Os06t0245700-00
Chr06	irgsp1_rep	three_prime_UTR	7565341	7565516	.	-	.	Parent=Os06t0245700-00
Chr06	irgsp1_rep	three_prime_UTR	7565169	7565278	.	-	.	Parent=Os06t0245700-00
Chr06	irgsp1_rep	mRNA	7574953	7581463	.	+	.	ID=Os06t0245800-01;Name=Os06t0245800-01;Locus_id=Os06g0245800;Note=Similar to Alanyl-tRNA synthetase.;Transcript_evidence=AK066714 (DDBJ%2C Best hit);ORF_evidence=XP_002874093.1 (RefSeq);GO=Biological Process: alanyl-tRNA aminoacylation (GO:0006419),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: alanine-tRNA ligase activity (GO:0004813),Molecular Function: ATP binding (GO:0005524);InterPro=Alanyl-tRNA synthetase%2C class IIc%2C N-terminal (IPR018164),Alanyl-tRNA synthetase%2C class IIc%2C core domain (IPR018165);NIAS_FLcDNA=J013088K03;Expression=AK066714;TENOR=Os06t0245800-01;KEGG=Os06t0245800-01 (EC:6.1.1.7)
Chr06	irgsp1_rep	five_prime_UTR	7574953	7574999	.	+	.	Parent=Os06t0245800-01
Chr06	irgsp1_rep	CDS	7575000	7575153	.	+	0	Parent=Os06t0245800-01
Chr06	irgsp1_rep	CDS	7575240	7575329	.	+	2	Parent=Os06t0245800-01
Chr06	irgsp1_rep	CDS	7575683	7575885	.	+	2	Parent=Os06t0245800-01
Chr06	irgsp1_rep	CDS	7576457	7576635	.	+	0	Parent=Os06t0245800-01
Chr06	irgsp1_rep	CDS	7577096	7577174	.	+	1	Parent=Os06t0245800-01
Chr06	irgsp1_rep	CDS	7577586	7577720	.	+	0	Parent=Os06t0245800-01
Chr06	irgsp1_rep	CDS	7577824	7577844	.	+	0	Parent=Os06t0245800-01
Chr06	irgsp1_rep	three_prime_UTR	7577845	7577983	.	+	.	Parent=Os06t0245800-01
Chr06	irgsp1_rep	three_prime_UTR	7578070	7578180	.	+	.	Parent=Os06t0245800-01
Chr06	irgsp1_rep	three_prime_UTR	7578267	7578859	.	+	.	Parent=Os06t0245800-01
Chr06	irgsp1_rep	three_prime_UTR	7578961	7579187	.	+	.	Parent=Os06t0245800-01
Chr06	irgsp1_rep	three_prime_UTR	7579534	7579806	.	+	.	Parent=Os06t0245800-01
Chr06	irgsp1_rep	three_prime_UTR	7580036	7580245	.	+	.	Parent=Os06t0245800-01
Chr06	irgsp1_rep	three_prime_UTR	7580608	7580756	.	+	.	Parent=Os06t0245800-01
Chr06	irgsp1_rep	three_prime_UTR	7580899	7581463	.	+	.	Parent=Os06t0245800-01
Chr06	irgsp1_rep	mRNA	7584780	7590605	.	+	.	ID=Os06t0245900-01;Name=Os06t0245900-01;Locus_id=Os06g0245900;Oryzabase Gene Symbol Synonym(s)=Orysa%3BDEL2;Oryzabase Gene Name Synonym(s)=DP-LIKE 2;Note=E2F Family domain containing protein.;Transcript_evidence=AK120032 (DDBJ%2C Best hit);ORF_evidence=B9FSH6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: transcription factor complex (GO:0005667),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Transcription factor E2F/dimerisation partner (TDP) (IPR003316),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),E2F Family (IPR015633);NIAS_FLcDNA=002-186-D11;Oryzabase=13315;Expression=AK120032;TENOR=Os06t0245900-01;KEGG=Os06t0245900-01
Chr06	irgsp1_rep	five_prime_UTR	7584780	7584823	.	+	.	Parent=Os06t0245900-01
Chr06	irgsp1_rep	CDS	7584824	7585026	.	+	0	Parent=Os06t0245900-01
Chr06	irgsp1_rep	CDS	7585135	7585255	.	+	1	Parent=Os06t0245900-01
Chr06	irgsp1_rep	CDS	7585359	7585436	.	+	0	Parent=Os06t0245900-01
Chr06	irgsp1_rep	CDS	7585554	7585619	.	+	0	Parent=Os06t0245900-01
Chr06	irgsp1_rep	CDS	7585739	7585871	.	+	0	Parent=Os06t0245900-01
Chr06	irgsp1_rep	CDS	7585957	7586024	.	+	2	Parent=Os06t0245900-01
Chr06	irgsp1_rep	CDS	7586113	7586185	.	+	0	Parent=Os06t0245900-01
Chr06	irgsp1_rep	CDS	7586280	7586341	.	+	2	Parent=Os06t0245900-01
Chr06	irgsp1_rep	CDS	7586423	7586816	.	+	0	Parent=Os06t0245900-01
Chr06	irgsp1_rep	CDS	7590318	7590397	.	+	2	Parent=Os06t0245900-01
Chr06	irgsp1_rep	three_prime_UTR	7590398	7590605	.	+	.	Parent=Os06t0245900-01
Chr06	irgsp1_rep	mRNA	7591680	7593322	.	-	.	ID=Os06t0246000-01;Name=Os06t0246000-01;Locus_id=Os06g0246000;Oryzabase Gene Name Synonym(s)=B12D-like protein;Note=Similar to HvB12D protein (B12Dg1 protein).;Transcript_evidence=AK121585 (DDBJ%2C Best hit),AK099446 (DDBJ%2C Best hit),AK119679 (DDBJ%2C Best hit);ORF_evidence=O22414 (UniProt);NIAS_FLcDNA=J033037I06,J013021L07,002-156-H09;Oryzabase=18120;TENOR=Os06t0246000-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	7593252	7593322	.	-	.	Parent=Os06t0246000-01
Chr06	irgsp1_rep	CDS	7593222	7593251	.	-	0	Parent=Os06t0246000-01
Chr06	irgsp1_rep	CDS	7593042	7593130	.	-	0	Parent=Os06t0246000-01
Chr06	irgsp1_rep	CDS	7591912	7592062	.	-	1	Parent=Os06t0246000-01
Chr06	irgsp1_rep	three_prime_UTR	7591680	7591911	.	-	.	Parent=Os06t0246000-01
Chr06	irgsp1_rep	mRNA	7597085	7598163	.	-	.	ID=Os06t0246200-00;Name=Os06t0246200-00;Locus_id=Os06g0246200;Note=Similar to Formin-like protein 14.;Transcript_evidence=BT065693 (DDBJ);ORF_evidence=Q0DLG0 (UniProt);TENOR=Os06t0246200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	7597321	7598163	.	-	0	Parent=Os06t0246200-00
Chr06	irgsp1_rep	CDS	7597246	7597257	.	-	0	Parent=Os06t0246200-00
Chr06	irgsp1_rep	three_prime_UTR	7597085	7597245	.	-	.	Parent=Os06t0246200-00
Chr06	irgsp1_rep	mRNA	7601000	7601522	.	+	.	ID=Os06t0246400-00;Name=Os06t0246400-00;Locus_id=Os06g0246400;Note=Glycosyltransferase AER61%2C uncharacterised domain containing protein.;Transcript_evidence=EU942988 (DDBJ);ORF_evidence=Q654V7 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyltransferase AER61%2C uncharacterised (IPR007657);TENOR=Os06t0246400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	7601000	7601114	.	+	.	Parent=Os06t0246400-00
Chr06	irgsp1_rep	CDS	7601115	7601522	.	+	0	Parent=Os06t0246400-00
Chr06	irgsp1_rep	mRNA	7602364	7605689	.	+	.	ID=Os06t0246500-01;Name=Os06t0246500-01;Locus_id=Os06g0246500;Oryzabase Gene Name Synonym(s)=Pyruvate dehydrogenase E1 alpha subunit;Note=Similar to Pyruvate dehydrogenase E1 alpha subunit (EC 1.2.4.1).;Transcript_evidence=AK105105 (DDBJ%2C Best hit);ORF_evidence=B6UI91 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: intracellular membrane-bounded organelle (GO:0043231),Molecular Function: pyruvate dehydrogenase (acetyl-transferring) activity (GO:0004739),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C disulfide as acceptor (GO:0016624);InterPro=Dehydrogenase%2C E1 component (IPR001017),Pyruvate dehydrogenase (acetyl-transferring) E1 component%2C alpha subunit%2C subgroup y (IPR017597);NIAS_FLcDNA=001-100-E08;Oryzabase=20291;Expression=AK105105;TENOR=Os06t0246500-01;KEGG=Os06t0246500-01 (EC:1.2.4.1)
Chr06	irgsp1_rep	five_prime_UTR	7602364	7602563	.	+	.	Parent=Os06t0246500-01
Chr06	irgsp1_rep	CDS	7602564	7603269	.	+	0	Parent=Os06t0246500-01
Chr06	irgsp1_rep	CDS	7603386	7603465	.	+	2	Parent=Os06t0246500-01
Chr06	irgsp1_rep	CDS	7604066	7604143	.	+	0	Parent=Os06t0246500-01
Chr06	irgsp1_rep	CDS	7604349	7604444	.	+	0	Parent=Os06t0246500-01
Chr06	irgsp1_rep	CDS	7604553	7604624	.	+	0	Parent=Os06t0246500-01
Chr06	irgsp1_rep	CDS	7604859	7604912	.	+	0	Parent=Os06t0246500-01
Chr06	irgsp1_rep	CDS	7605002	7605067	.	+	0	Parent=Os06t0246500-01
Chr06	irgsp1_rep	CDS	7605474	7605518	.	+	0	Parent=Os06t0246500-01
Chr06	irgsp1_rep	three_prime_UTR	7605519	7605689	.	+	.	Parent=Os06t0246500-01
Chr06	irgsp1_rep	mRNA	7607108	7607939	.	-	.	ID=Os06t0246600-01;Name=Os06t0246600-01;Locus_id=Os06g0246600;Oryzabase Gene Symbol Synonym(s)=OsGLR3.4%2C GLR3.4;Oryzabase Gene Name Synonym(s)=Glutamate receptor homolog 3.4;Note=Similar to Glutamate receptor.;Transcript_evidence=AK107692 (DDBJ%2C Best hit);ORF_evidence=A2YHB3 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: ionotropic glutamate receptor activity (GO:0004970),Molecular Function: extracellular-glutamate-gated ion channel activity (GO:0005234);InterPro=Ionotropic glutamate receptor (IPR001320);NIAS_FLcDNA=002-132-C01;Oryzabase=15501;TENOR=Os06t0246600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	7607737	7607939	.	-	.	Parent=Os06t0246600-01
Chr06	irgsp1_rep	CDS	7607419	7607736	.	-	0	Parent=Os06t0246600-01
Chr06	irgsp1_rep	CDS	7607219	7607344	.	-	0	Parent=Os06t0246600-01
Chr06	irgsp1_rep	three_prime_UTR	7607108	7607218	.	-	.	Parent=Os06t0246600-01
Chr06	irgsp1_rep	mRNA	7629550	7631267	.	+	.	ID=Os06t0247000-01;Name=Os06t0247000-01;Locus_id=Os06g0247000;CGSNL Gene Symbol=GATL7;CGSNL Gene Name=GALACTURONOSYLTRANSFERASE-LIKE 7;Oryzabase Gene Symbol Synonym(s)=OsGATL7;Oryzabase Gene Name Synonym(s)=galacturonosyltransferase-like 7;Note=Similar to Avr9/Cf-9 rapidly elicited protein 231.;Transcript_evidence=AK111681 (DDBJ%2C Best hit);ORF_evidence=B6U2W6 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 8 (IPR002495);NIAS_FLcDNA=J013160E04;Oryzabase=23248;Expression=AK111681;TENOR=Os06t0247000-01;KEGG=Os06t0247000-01
Chr06	irgsp1_rep	five_prime_UTR	7629550	7629551	.	+	.	Parent=Os06t0247000-01
Chr06	irgsp1_rep	CDS	7629552	7629646	.	+	0	Parent=Os06t0247000-01
Chr06	irgsp1_rep	CDS	7630566	7630872	.	+	1	Parent=Os06t0247000-01
Chr06	irgsp1_rep	three_prime_UTR	7630873	7631267	.	+	.	Parent=Os06t0247000-01
Chr06	irgsp1_rep	mRNA	7629754	7630787	.	-	.	ID=Os06t0247101-00;Name=Os06t0247101-00;Locus_id=Os06g0247101;Note=Non-protein coding transcript.;Transcript_evidence=BT085441 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0247101-00
Chr06	irgsp1_rep	exon	7629754	7630787	.	-	.	Parent=Os06t0247101-00
Chr06	irgsp1_rep	mRNA	7635860	7636636	.	+	.	ID=Os06t0247150-00;Name=Os06t0247150-00;Locus_id=Os06g0247150;Note=Non-protein coding transcript.;Transcript_evidence=AK358862 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0247150-00
Chr06	irgsp1_rep	exon	7635860	7636030	.	+	.	Parent=Os06t0247150-00
Chr06	irgsp1_rep	exon	7636382	7636636	.	+	.	Parent=Os06t0247150-00
Chr06	irgsp1_rep	mRNA	7642169	7644438	.	+	.	ID=Os06t0247200-00;Name=Os06t0247200-00;Locus_id=Os06g0247200;Note=Hypothetical conserved gene.;Transcript_evidence=AK240988 (DDBJ%2C Secondary hit);ORF_evidence=B9FSI3 (UniProt);TENOR=Os06t0247200-00;KEGG=Os06t0247200-00
Chr06	irgsp1_rep	CDS	7642169	7642308	.	+	0	Parent=Os06t0247200-00
Chr06	irgsp1_rep	CDS	7642405	7642511	.	+	1	Parent=Os06t0247200-00
Chr06	irgsp1_rep	CDS	7642627	7642694	.	+	2	Parent=Os06t0247200-00
Chr06	irgsp1_rep	three_prime_UTR	7642695	7642754	.	+	.	Parent=Os06t0247200-00
Chr06	irgsp1_rep	three_prime_UTR	7644225	7644438	.	+	.	Parent=Os06t0247200-00
Chr06	irgsp1_rep	mRNA	7649087	7654307	.	-	.	ID=Os06t0247500-01;Name=Os06t0247500-01;Locus_id=Os06g0247500;RAP-DB Gene Symbol Synonym(s)=OsPFPB%2C PFPB%2C OsPFP-B%2C PFP-B;RAP-DB Gene Name Synonym(s)=pyrophosphate-dependent phosphofrucokinase beta-subunit%2C PFP beta-subunit%2C Pyrophosphate-Fru-6-P1-phosphotransferase;CGSNL Gene Symbol=PFPB;CGSNL Gene Name=PYROPHOSPHATE-DEPENDENT PHOSPHOFRUCOKINASE BETA-SUBUNIT;Oryzabase Gene Symbol Synonym(s)=OsPFPB%2C OsPFP-B%2C PFP-B%2C PFPbeta;Oryzabase Gene Name Synonym(s)=pyrophosphate-dependent phosphofrucokinase beta-subunit%2C PFP beta-subunit%2C Pyrophosphate-Fru-6-P1-phosphotransferase%2C Pyrophosphate: fructose-6-phosphate 1-phosphotransferase beta subunit%2C PFP beta subunit%2C PFPase beta subunit%2C regulatory b-subunit of PFP1%2C Pyrophosphate-fructose 6-phosphate 1-phosphotransferase beta subunit;Note=Pyrophosphate-fructose 6-phosphate 1-phosphotransferase (PFP) beta subunit%2C Regulation of carbon metabolism during grain filling;Transcript_evidence=AK069095;ORF_evidence=Q654U8;GO=Biological Process: fructose 6-phosphate metabolic process (GO:0006002),Biological Process: glycolytic process (GO:0006096),Molecular Function: 6-phosphofructokinase activity (GO:0003872),Molecular Function: ATP binding (GO:0005524),Molecular Function: diphosphate-fructose-6-phosphate 1-phosphotransferase activity (GO:0047334);InterPro=ATP-dependent 6-phosphofructokinase (IPR022953),Pyrophosphate-dependent phosphofructokinase PfpB (IPR011183),Phosphofructokinase domain (IPR000023),Pyrophosphate-dependent phosphofructokinase%2C alpha-helical domain (IPR013981);NIAS_FLcDNA=J023004M14;Manual Curation=April 28%2C 2016;Literature_PMID=26993329;Oryzabase=12050;Expression=AK069095;TENOR=Os06t0247500-01;KEGG=Os06t0247500-01 (EC:2.7.1.90)
Chr06	irgsp1_rep	five_prime_UTR	7654243	7654307	.	-	.	Parent=Os06t0247500-01
Chr06	irgsp1_rep	CDS	7654044	7654242	.	-	0	Parent=Os06t0247500-01
Chr06	irgsp1_rep	CDS	7653776	7653931	.	-	2	Parent=Os06t0247500-01
Chr06	irgsp1_rep	CDS	7653288	7653409	.	-	2	Parent=Os06t0247500-01
Chr06	irgsp1_rep	CDS	7652927	7652980	.	-	0	Parent=Os06t0247500-01
Chr06	irgsp1_rep	CDS	7652690	7652796	.	-	0	Parent=Os06t0247500-01
Chr06	irgsp1_rep	CDS	7652226	7652331	.	-	1	Parent=Os06t0247500-01
Chr06	irgsp1_rep	CDS	7651944	7652007	.	-	0	Parent=Os06t0247500-01
Chr06	irgsp1_rep	CDS	7651461	7651549	.	-	2	Parent=Os06t0247500-01
Chr06	irgsp1_rep	CDS	7650755	7650886	.	-	0	Parent=Os06t0247500-01
Chr06	irgsp1_rep	CDS	7650508	7650678	.	-	0	Parent=Os06t0247500-01
Chr06	irgsp1_rep	CDS	7650296	7650411	.	-	0	Parent=Os06t0247500-01
Chr06	irgsp1_rep	CDS	7650113	7650224	.	-	1	Parent=Os06t0247500-01
Chr06	irgsp1_rep	CDS	7649866	7649950	.	-	0	Parent=Os06t0247500-01
Chr06	irgsp1_rep	CDS	7649601	7649645	.	-	2	Parent=Os06t0247500-01
Chr06	irgsp1_rep	CDS	7649443	7649511	.	-	2	Parent=Os06t0247500-01
Chr06	irgsp1_rep	CDS	7649275	7649351	.	-	2	Parent=Os06t0247500-01
Chr06	irgsp1_rep	three_prime_UTR	7649087	7649274	.	-	.	Parent=Os06t0247500-01
Chr06	irgsp1_rep	mRNA	7648990	7649622	.	-	.	ID=Os06t0247500-02;Name=Os06t0247500-02;Locus_id=Os06g0247500;CGSNL Gene Symbol=PFPB;CGSNL Gene Name=PYROPHOSPHATE-DEPENDENT PHOSPHOFRUCOKINASE BETA-SUBUNIT;Oryzabase Gene Symbol Synonym(s)=OsPFPB%2C OsPFP-B%2C PFP-B%2C PFPbeta;Oryzabase Gene Name Synonym(s)=pyrophosphate-dependent phosphofrucokinase beta-subunit%2C PFP beta-subunit%2C Pyrophosphate-Fru-6-P1-phosphotransferase%2C Pyrophosphate: fructose-6-phosphate 1-phosphotransferase beta subunit%2C PFP beta subunit%2C PFPase beta subunit%2C regulatory b-subunit of PFP1%2C Pyrophosphate-fructose 6-phosphate 1-phosphotransferase beta subunit;Note=Similar to pyrophosphate--fructose 6-phosphate 1-phosphotransferase beta subunit.;Transcript_evidence=AK060464 (DDBJ%2C Best hit);ORF_evidence=NP_192313.3 (RefSeq);GO=Biological Process: glycolysis (GO:0006096),Cellular Component: 6-phosphofructokinase complex (GO:0005945),Molecular Function: 6-phosphofructokinase activity (GO:0003872);InterPro=Phosphofructokinase domain (IPR000023);NIAS_FLcDNA=001-012-C08;Oryzabase=12050;Expression=AK060464;TENOR=Os06t0247500-02;KEGG=Os06t0247500-02 (EC:2.7.1.90)
Chr06	irgsp1_rep	CDS	7649601	7649622	.	-	0	Parent=Os06t0247500-02
Chr06	irgsp1_rep	CDS	7649443	7649511	.	-	2	Parent=Os06t0247500-02
Chr06	irgsp1_rep	CDS	7649275	7649351	.	-	2	Parent=Os06t0247500-02
Chr06	irgsp1_rep	three_prime_UTR	7648990	7649274	.	-	.	Parent=Os06t0247500-02
Chr06	irgsp1_rep	mRNA	7649075	7654326	.	+	.	ID=Os06t0247651-00;Name=Os06t0247651-00;Locus_id=Os06g0247651;Note=Hypothetical protein.;Transcript_evidence=tplb0039m04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0247651-00
Chr06	irgsp1_rep	five_prime_UTR	7649075	7649353	.	+	.	Parent=Os06t0247651-00
Chr06	irgsp1_rep	five_prime_UTR	7649446	7649505	.	+	.	Parent=Os06t0247651-00
Chr06	irgsp1_rep	five_prime_UTR	7649591	7649637	.	+	.	Parent=Os06t0247651-00
Chr06	irgsp1_rep	five_prime_UTR	7649858	7649941	.	+	.	Parent=Os06t0247651-00
Chr06	irgsp1_rep	five_prime_UTR	7650104	7650224	.	+	.	Parent=Os06t0247651-00
Chr06	irgsp1_rep	five_prime_UTR	7650296	7650394	.	+	.	Parent=Os06t0247651-00
Chr06	irgsp1_rep	five_prime_UTR	7650492	7650519	.	+	.	Parent=Os06t0247651-00
Chr06	irgsp1_rep	CDS	7650520	7650668	.	+	0	Parent=Os06t0247651-00
Chr06	irgsp1_rep	CDS	7650745	7650883	.	+	1	Parent=Os06t0247651-00
Chr06	irgsp1_rep	CDS	7651458	7651549	.	+	0	Parent=Os06t0247651-00
Chr06	irgsp1_rep	CDS	7651944	7651965	.	+	1	Parent=Os06t0247651-00
Chr06	irgsp1_rep	three_prime_UTR	7651966	7652001	.	+	.	Parent=Os06t0247651-00
Chr06	irgsp1_rep	three_prime_UTR	7652216	7652321	.	+	.	Parent=Os06t0247651-00
Chr06	irgsp1_rep	three_prime_UTR	7652682	7652796	.	+	.	Parent=Os06t0247651-00
Chr06	irgsp1_rep	three_prime_UTR	7652927	7652979	.	+	.	Parent=Os06t0247651-00
Chr06	irgsp1_rep	three_prime_UTR	7653287	7653412	.	+	.	Parent=Os06t0247651-00
Chr06	irgsp1_rep	three_prime_UTR	7653781	7653929	.	+	.	Parent=Os06t0247651-00
Chr06	irgsp1_rep	three_prime_UTR	7654042	7654326	.	+	.	Parent=Os06t0247651-00
Chr06	irgsp1_rep	mRNA	7661735	7669994	.	+	.	ID=Os06t0247800-01;Name=Os06t0247800-01;Locus_id=Os06g0247800;Oryzabase Gene Symbol Synonym(s)=OsDRP2A%2C DRP2A;Oryzabase Gene Name Synonym(s)=dynamin-related protein 2A;Note=Similar to Dynamin-like protein (Fragment).;Transcript_evidence=AK102187 (DDBJ%2C Best hit);ORF_evidence=NP_001152484.1 (RefSeq);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: protein binding (GO:0005515),Molecular Function: GTP binding (GO:0005525);InterPro=Dynamin central domain (IPR000375),Dynamin%2C GTPase domain (IPR001401),Pleckstrin homology domain (IPR001849),Dynamin GTPase effector (IPR003130),Pleckstrin homology-type (IPR011993),Dynamin%2C GTPase region%2C conserved site (IPR019762),GTPase effector domain%2C GED (IPR020850),Dynamin (IPR022812);NIAS_FLcDNA=J033086P03;Oryzabase=21598;Expression=AK102187;TENOR=Os06t0247800-01;KEGG=Os06t0247800-01
Chr06	irgsp1_rep	five_prime_UTR	7661735	7661946	.	+	.	Parent=Os06t0247800-01
Chr06	irgsp1_rep	CDS	7661947	7662087	.	+	0	Parent=Os06t0247800-01
Chr06	irgsp1_rep	CDS	7662200	7662250	.	+	0	Parent=Os06t0247800-01
Chr06	irgsp1_rep	CDS	7662359	7662479	.	+	0	Parent=Os06t0247800-01
Chr06	irgsp1_rep	CDS	7662589	7662693	.	+	2	Parent=Os06t0247800-01
Chr06	irgsp1_rep	CDS	7663146	7663207	.	+	2	Parent=Os06t0247800-01
Chr06	irgsp1_rep	CDS	7663581	7663698	.	+	0	Parent=Os06t0247800-01
Chr06	irgsp1_rep	CDS	7663779	7664115	.	+	2	Parent=Os06t0247800-01
Chr06	irgsp1_rep	CDS	7664572	7664719	.	+	1	Parent=Os06t0247800-01
Chr06	irgsp1_rep	CDS	7664815	7664916	.	+	0	Parent=Os06t0247800-01
Chr06	irgsp1_rep	CDS	7665007	7665126	.	+	0	Parent=Os06t0247800-01
Chr06	irgsp1_rep	CDS	7665619	7665702	.	+	0	Parent=Os06t0247800-01
Chr06	irgsp1_rep	CDS	7665805	7665932	.	+	0	Parent=Os06t0247800-01
Chr06	irgsp1_rep	CDS	7666534	7666618	.	+	1	Parent=Os06t0247800-01
Chr06	irgsp1_rep	CDS	7666749	7666896	.	+	0	Parent=Os06t0247800-01
Chr06	irgsp1_rep	CDS	7667154	7667230	.	+	2	Parent=Os06t0247800-01
Chr06	irgsp1_rep	CDS	7667370	7667426	.	+	0	Parent=Os06t0247800-01
Chr06	irgsp1_rep	CDS	7667606	7667744	.	+	0	Parent=Os06t0247800-01
Chr06	irgsp1_rep	CDS	7667825	7667979	.	+	2	Parent=Os06t0247800-01
Chr06	irgsp1_rep	CDS	7668186	7668299	.	+	0	Parent=Os06t0247800-01
Chr06	irgsp1_rep	CDS	7668391	7668458	.	+	0	Parent=Os06t0247800-01
Chr06	irgsp1_rep	CDS	7669013	7669179	.	+	1	Parent=Os06t0247800-01
Chr06	irgsp1_rep	CDS	7669428	7669636	.	+	2	Parent=Os06t0247800-01
Chr06	irgsp1_rep	three_prime_UTR	7669637	7669994	.	+	.	Parent=Os06t0247800-01
Chr06	irgsp1_rep	mRNA	7669759	7669996	.	+	.	ID=Os06t0247800-02;Name=Os06t0247800-02;Locus_id=Os06g0247800;Oryzabase Gene Symbol Synonym(s)=OsDRP2A%2C DRP2A;Oryzabase Gene Name Synonym(s)=dynamin-related protein 2A;Note=Non-protein coding transcript.;Transcript_evidence=AK058670 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-018-H02;Oryzabase=21598;TENOR=Os06t0247800-02
Chr06	irgsp1_rep	exon	7669759	7669996	.	+	.	Parent=Os06t0247800-02
Chr06	irgsp1_rep	mRNA	7667912	7669737	.	-	.	ID=Os06t0247850-00;Name=Os06t0247850-00;Locus_id=Os06g0247850;Note=Non-protein coding transcript.;Transcript_evidence=BT016893 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0247850-00
Chr06	irgsp1_rep	exon	7669414	7669737	.	-	.	Parent=Os06t0247850-00
Chr06	irgsp1_rep	exon	7669011	7669168	.	-	.	Parent=Os06t0247850-00
Chr06	irgsp1_rep	exon	7668389	7668456	.	-	.	Parent=Os06t0247850-00
Chr06	irgsp1_rep	exon	7668177	7668297	.	-	.	Parent=Os06t0247850-00
Chr06	irgsp1_rep	exon	7667912	7667974	.	-	.	Parent=Os06t0247850-00
Chr06	irgsp1_rep	mRNA	7671257	7674776	.	-	.	ID=Os06t0247900-01;Name=Os06t0247900-01;Locus_id=Os06g0247900;CGSNL Gene Symbol=GH9B9;CGSNL Gene Name=GLYCOSIDE HYDROLASE 9B9;Oryzabase Gene Symbol Synonym(s)=OsGH9B9;Oryzabase Gene Name Synonym(s)=glycoside hydrolase OsGH9B9%2C glycoside hydrolase 9B9;Note=Similar to Endo-beta-1%2C4-glucanase precursor (EC 3.2.1.4).;Transcript_evidence=AK065325 (DDBJ%2C Best hit);ORF_evidence=Q6Z5P2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 9 (IPR001701),Six-hairpin glycosidase-like (IPR008928),Six-hairpin glycosidase (IPR012341),Glycoside hydrolase%2C family 9%2C active site (IPR018221);NIAS_FLcDNA=J013002P24;Oryzabase=11709;Expression=AK065325;TENOR=Os06t0247900-01;KEGG=Os06t0247900-01 (EC:3.2.1.4)
Chr06	irgsp1_rep	five_prime_UTR	7674776	7674776	.	-	.	Parent=Os06t0247900-01
Chr06	irgsp1_rep	CDS	7674691	7674775	.	-	0	Parent=Os06t0247900-01
Chr06	irgsp1_rep	CDS	7673992	7674089	.	-	2	Parent=Os06t0247900-01
Chr06	irgsp1_rep	CDS	7673303	7673503	.	-	0	Parent=Os06t0247900-01
Chr06	irgsp1_rep	CDS	7672439	7672693	.	-	0	Parent=Os06t0247900-01
Chr06	irgsp1_rep	CDS	7671474	7672208	.	-	0	Parent=Os06t0247900-01
Chr06	irgsp1_rep	three_prime_UTR	7671257	7671473	.	-	.	Parent=Os06t0247900-01
Chr06	irgsp1_rep	mRNA	7693129	7693983	.	+	.	ID=Os06t0248200-01;Name=Os06t0248200-01;Locus_id=Os06g0248200;Note=Hypothetical conserved gene.;Transcript_evidence=AK288146 (DDBJ%2C Best hit);ORF_evidence=Q654N6 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J080314L21;TENOR=Os06t0248200-01;KEGG=Os06t0248200-01
Chr06	irgsp1_rep	five_prime_UTR	7693129	7693212	.	+	.	Parent=Os06t0248200-01
Chr06	irgsp1_rep	CDS	7693213	7693464	.	+	0	Parent=Os06t0248200-01
Chr06	irgsp1_rep	CDS	7693648	7693890	.	+	0	Parent=Os06t0248200-01
Chr06	irgsp1_rep	three_prime_UTR	7693891	7693983	.	+	.	Parent=Os06t0248200-01
Chr06	irgsp1_rep	mRNA	7695892	7696942	.	-	.	ID=Os06t0248300-01;Name=Os06t0248300-01;Locus_id=Os06g0248300;Oryzabase Gene Symbol Synonym(s)=OsFbox305%2C Os_F0041;Oryzabase Gene Name Synonym(s)=F-box protein 305;Note=Conserved hypothetical protein.;Transcript_evidence=AK110713 (DDBJ%2C Best hit);ORF_evidence=Q84UL9 (UniProt);NIAS_FLcDNA=002-170-D03;Oryzabase=17084;Expression=AK110713;TENOR=Os06t0248300-01;KEGG=Os06t0248300-01
Chr06	irgsp1_rep	five_prime_UTR	7696194	7696942	.	-	.	Parent=Os06t0248300-01
Chr06	irgsp1_rep	CDS	7696023	7696193	.	-	0	Parent=Os06t0248300-01
Chr06	irgsp1_rep	three_prime_UTR	7695892	7696022	.	-	.	Parent=Os06t0248300-01
Chr06	irgsp1_rep	mRNA	7694324	7696008	.	-	.	ID=Os06t0248300-03;Name=Os06t0248300-03;Locus_id=Os06g0248300;Oryzabase Gene Symbol Synonym(s)=OsFbox305%2C Os_F0041;Oryzabase Gene Name Synonym(s)=F-box protein 305;Note=Conserved hypothetical protein.;Transcript_evidence=AK070362 (DDBJ%2C Best hit),AK070175 (DDBJ%2C Best hit);ORF_evidence=B8B4J0 (UniProt);NIAS_FLcDNA=J023049B05,J023044G18;Oryzabase=17084;TENOR=Os06t0248300-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	7695860	7696008	.	-	.	Parent=Os06t0248300-03
Chr06	irgsp1_rep	CDS	7695229	7695859	.	-	0	Parent=Os06t0248300-03
Chr06	irgsp1_rep	CDS	7694590	7694612	.	-	2	Parent=Os06t0248300-03
Chr06	irgsp1_rep	three_prime_UTR	7694324	7694589	.	-	.	Parent=Os06t0248300-03
Chr06	irgsp1_rep	mRNA	7698453	7703774	.	+	.	ID=Os06t0248400-01;Name=Os06t0248400-01;Locus_id=Os06g0248400;Note=Poly(ADP-ribose) polymerase%2C catalytic region domain containing protein.;Transcript_evidence=AK065783 (DDBJ%2C Best hit);ORF_evidence=Q258Z8 (UniProt);GO=Molecular Function: NAD+ ADP-ribosyltransferase activity (GO:0003950);InterPro=Poly(ADP-ribose) polymerase%2C catalytic domain (IPR012317);NIAS_FLcDNA=J013038L18;Expression=AK065783;TENOR=Os06t0248400-01;KEGG=Os06t0248400-01
Chr06	irgsp1_rep	five_prime_UTR	7698453	7698587	.	+	.	Parent=Os06t0248400-01
Chr06	irgsp1_rep	five_prime_UTR	7699193	7699198	.	+	.	Parent=Os06t0248400-01
Chr06	irgsp1_rep	CDS	7699199	7700160	.	+	0	Parent=Os06t0248400-01
Chr06	irgsp1_rep	CDS	7700264	7700499	.	+	1	Parent=Os06t0248400-01
Chr06	irgsp1_rep	CDS	7700605	7700684	.	+	2	Parent=Os06t0248400-01
Chr06	irgsp1_rep	CDS	7702178	7703075	.	+	0	Parent=Os06t0248400-01
Chr06	irgsp1_rep	CDS	7703166	7703293	.	+	2	Parent=Os06t0248400-01
Chr06	irgsp1_rep	three_prime_UTR	7703294	7703328	.	+	.	Parent=Os06t0248400-01
Chr06	irgsp1_rep	three_prime_UTR	7703424	7703774	.	+	.	Parent=Os06t0248400-01
Chr06	irgsp1_rep	mRNA	7709145	7710744	.	+	.	ID=Os06t0248500-00;Name=Os06t0248500-00;Locus_id=Os06g0248500;Oryzabase Gene Symbol Synonym(s)=OsPUB39;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 39%2C U-box protein 39;Note=U box domain containing protein.;Transcript_evidence=EU951385 (DDBJ);ORF_evidence=NP_001147860.1 (RefSeq);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488);InterPro=U box domain (IPR003613),Armadillo-like helical (IPR011989),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Armadillo-type fold (IPR016024);Oryzabase=17831;TENOR=Os06t0248500-00;KEGG=Os06t0248500-00
Chr06	irgsp1_rep	CDS	7709145	7710506	.	+	0	Parent=Os06t0248500-00
Chr06	irgsp1_rep	three_prime_UTR	7710507	7710744	.	+	.	Parent=Os06t0248500-00
Chr06	irgsp1_rep	mRNA	7722728	7723354	.	-	.	ID=Os06t0248600-01;Name=Os06t0248600-01;Locus_id=Os06g0248600;Note=Conserved hypothetical protein.;Transcript_evidence=AK111144 (DDBJ%2C Best hit);ORF_evidence=A2YB98 (UniProt);NIAS_FLcDNA=002-176-E05;Expression=AK111144;TENOR=Os06t0248600-01;KEGG=Os06t0248600-01
Chr06	irgsp1_rep	five_prime_UTR	7723273	7723354	.	-	.	Parent=Os06t0248600-01
Chr06	irgsp1_rep	CDS	7722991	7723272	.	-	0	Parent=Os06t0248600-01
Chr06	irgsp1_rep	three_prime_UTR	7722728	7722990	.	-	.	Parent=Os06t0248600-01
Chr06	irgsp1_rep	mRNA	7763207	7763803	.	-	.	ID=Os06t0249350-00;Name=Os06t0249350-00;Locus_id=Os06g0249350;Note=Conserved hypothetical protein.;Transcript_evidence=AK355327 (DDBJ);ORF_evidence=NP_001174695.1 (RefSeq);TENOR=Os06t0249350-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	7763528	7763803	.	-	0	Parent=Os06t0249350-00
Chr06	irgsp1_rep	three_prime_UTR	7763207	7763527	.	-	.	Parent=Os06t0249350-00
Chr06	irgsp1_rep	mRNA	7768090	7769421	.	-	.	ID=Os06t0249500-00;Name=Os06t0249500-00;Locus_id=Os06g0249500;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q654P4 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os06t0249500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	7768090	7769421	.	-	0	Parent=Os06t0249500-00
Chr06	irgsp1_rep	mRNA	7785904	7786731	.	+	.	ID=Os06t0250000-00;Name=Os06t0250000-00;Locus_id=Os06g0250000;Oryzabase Gene Symbol Synonym(s)=OsFbox307%2C Os_F0034;Oryzabase Gene Name Synonym(s)=F-box protein 307;Note=Conserved hypothetical protein.;Transcript_evidence=BT037339 (DDBJ);ORF_evidence=Q653P6 (UniProt);Oryzabase=17086;TENOR=Os06t0250000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	7785904	7786731	.	+	0	Parent=Os06t0250000-00
Chr06	irgsp1_rep	mRNA	7789570	7789983	.	+	.	ID=Os06t0250300-00;Name=Os06t0250300-00;Locus_id=Os06g0250300;Note=Similar to Histone H2A.;Transcript_evidence=EU972629 (DDBJ);ORF_evidence=C5XBR4 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H2A (IPR002119),Histone-fold (IPR009072);TENOR=Os06t0250300-00;KEGG=Os06t0250300-00
Chr06	irgsp1_rep	five_prime_UTR	7789570	7789595	.	+	.	Parent=Os06t0250300-00
Chr06	irgsp1_rep	CDS	7789596	7789889	.	+	0	Parent=Os06t0250300-00
Chr06	irgsp1_rep	three_prime_UTR	7789890	7789983	.	+	.	Parent=Os06t0250300-00
Chr06	irgsp1_rep	mRNA	7799085	7806567	.	-	.	ID=Os06t0250600-01;Name=Os06t0250600-01;Locus_id=Os06g0250600;RAP-DB Gene Symbol Synonym(s)=OsK5.2%2C OsGORK;CGSNL Gene Symbol=GORK;CGSNL Gene Name=GUARD CELL OUTWARD RECTIFYING K+ CHANNEL;Oryzabase Gene Symbol Synonym(s)=OsGORK%2C OsK5.2%2C K5.2;Oryzabase Gene Name Synonym(s)=guard cell outward rectifying K+ channel;Note=Outward Shaker K<sup>+</sup> channel%2C K<sup>+</sup> release by guard cells for stomatal closure%2C K<sup>+</sup> translocation toward the shoots;Transcript_evidence=AK242807;ORF_evidence=Q653P0;GO=Biological Process: ion transport (GO:0006811),Biological Process: potassium ion transport (GO:0006813),Biological Process: transmembrane transport (GO:0055085),Molecular Function: ion channel activity (GO:0005216),Molecular Function: voltage-gated potassium channel activity (GO:0005249),Molecular Function: protein binding (GO:0005515),Cellular Component: membrane (GO:0016020);InterPro=Potassium channel%2C voltage-dependent%2C EAG/ELK/ERG (IPR003938),Ion transport domain (IPR005821),RmlC-like jelly roll fold (IPR014710),Cyclic nucleotide-binding-like (IPR018490),Cyclic nucleotide-binding domain (IPR000595),Ankyrin repeat-containing domain (IPR020683),KHA domain (IPR021789),Ankyrin repeat (IPR002110);NIAS_FLcDNA=J090060H17;Manual Curation=August 17%2C 2017;Literature_PMID=28626008;Oryzabase=21879;TENOR=Os06t0250600-01;KEGG=Os06t0250600-01
Chr06	irgsp1_rep	five_prime_UTR	7806428	7806567	.	-	.	Parent=Os06t0250600-01
Chr06	irgsp1_rep	CDS	7806141	7806427	.	-	0	Parent=Os06t0250600-01
Chr06	irgsp1_rep	CDS	7802694	7802918	.	-	1	Parent=Os06t0250600-01
Chr06	irgsp1_rep	CDS	7802404	7802467	.	-	1	Parent=Os06t0250600-01
Chr06	irgsp1_rep	CDS	7801960	7802299	.	-	0	Parent=Os06t0250600-01
Chr06	irgsp1_rep	CDS	7801567	7801862	.	-	2	Parent=Os06t0250600-01
Chr06	irgsp1_rep	CDS	7801295	7801375	.	-	0	Parent=Os06t0250600-01
Chr06	irgsp1_rep	CDS	7801089	7801187	.	-	0	Parent=Os06t0250600-01
Chr06	irgsp1_rep	CDS	7800690	7800911	.	-	0	Parent=Os06t0250600-01
Chr06	irgsp1_rep	CDS	7800363	7800551	.	-	0	Parent=Os06t0250600-01
Chr06	irgsp1_rep	CDS	7800188	7800263	.	-	0	Parent=Os06t0250600-01
Chr06	irgsp1_rep	CDS	7799393	7800090	.	-	2	Parent=Os06t0250600-01
Chr06	irgsp1_rep	three_prime_UTR	7799085	7799392	.	-	.	Parent=Os06t0250600-01
Chr06	irgsp1_rep	mRNA	7792178	7792604	.	+	.	ID=Os06t0250653-00;Name=Os06t0250653-00;Locus_id=Os06g0250653;Note=Hypothetical protein.;Transcript_evidence=AK364776 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0250653-00
Chr06	irgsp1_rep	CDS	7792178	7792604	.	+	0	Parent=Os06t0250653-00
Chr06	irgsp1_rep	mRNA	7799798	7800920	.	+	.	ID=Os06t0250800-00;Name=Os06t0250800-00;Locus_id=Os06g0250800;Note=Hypothetical protein.;Transcript_evidence=EU946793 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0250800-00
Chr06	irgsp1_rep	CDS	7799798	7799977	.	+	0	Parent=Os06t0250800-00
Chr06	irgsp1_rep	CDS	7800353	7800427	.	+	0	Parent=Os06t0250800-00
Chr06	irgsp1_rep	three_prime_UTR	7800428	7800497	.	+	.	Parent=Os06t0250800-00
Chr06	irgsp1_rep	three_prime_UTR	7800730	7800920	.	+	.	Parent=Os06t0250800-00
Chr06	irgsp1_rep	mRNA	7825468	7829696	.	+	.	ID=Os06t0251000-01;Name=Os06t0251000-01;Locus_id=Os06g0251000;Note=Similar to mitochondrion protein.;Transcript_evidence=AK240679 (DDBJ%2C Best hit);ORF_evidence=NP_001150928.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824);InterPro=UBA/THIF-type NAD/FAD binding fold (IPR000594),Molybdenum cofactor biosynthesis%2C MoeB (IPR009036),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J043001C08;TENOR=Os06t0251000-01;KEGG=Os06t0251000-01
Chr06	irgsp1_rep	five_prime_UTR	7825468	7825548	.	+	.	Parent=Os06t0251000-01
Chr06	irgsp1_rep	CDS	7825549	7825643	.	+	0	Parent=Os06t0251000-01
Chr06	irgsp1_rep	CDS	7825751	7825809	.	+	1	Parent=Os06t0251000-01
Chr06	irgsp1_rep	CDS	7826060	7826144	.	+	2	Parent=Os06t0251000-01
Chr06	irgsp1_rep	CDS	7826532	7826679	.	+	1	Parent=Os06t0251000-01
Chr06	irgsp1_rep	CDS	7826918	7826953	.	+	0	Parent=Os06t0251000-01
Chr06	irgsp1_rep	three_prime_UTR	7826954	7827169	.	+	.	Parent=Os06t0251000-01
Chr06	irgsp1_rep	three_prime_UTR	7827586	7827720	.	+	.	Parent=Os06t0251000-01
Chr06	irgsp1_rep	three_prime_UTR	7827842	7827973	.	+	.	Parent=Os06t0251000-01
Chr06	irgsp1_rep	three_prime_UTR	7828067	7828314	.	+	.	Parent=Os06t0251000-01
Chr06	irgsp1_rep	three_prime_UTR	7828395	7828519	.	+	.	Parent=Os06t0251000-01
Chr06	irgsp1_rep	three_prime_UTR	7828970	7829027	.	+	.	Parent=Os06t0251000-01
Chr06	irgsp1_rep	three_prime_UTR	7829160	7829696	.	+	.	Parent=Os06t0251000-01
Chr06	irgsp1_rep	mRNA	7835332	7840950	.	+	.	ID=Os06t0251100-00;Name=Os06t0251100-00;Locus_id=Os06g0251100;Note=Membrane attack complex component/perforin (MACPF) domain domain containing protein.;Transcript_evidence=BT064290 (DDBJ);ORF_evidence=NP_001057295.2 (RefSeq);InterPro=Membrane attack complex component/perforin (MACPF) domain (IPR020864);TENOR=Os06t0251100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	7835332	7835427	.	+	.	Parent=Os06t0251100-00
Chr06	irgsp1_rep	CDS	7835428	7835709	.	+	0	Parent=Os06t0251100-00
Chr06	irgsp1_rep	CDS	7836220	7836461	.	+	0	Parent=Os06t0251100-00
Chr06	irgsp1_rep	CDS	7838414	7838615	.	+	1	Parent=Os06t0251100-00
Chr06	irgsp1_rep	CDS	7838709	7838792	.	+	0	Parent=Os06t0251100-00
Chr06	irgsp1_rep	CDS	7839188	7839371	.	+	0	Parent=Os06t0251100-00
Chr06	irgsp1_rep	CDS	7839788	7839953	.	+	2	Parent=Os06t0251100-00
Chr06	irgsp1_rep	CDS	7840054	7840122	.	+	1	Parent=Os06t0251100-00
Chr06	irgsp1_rep	CDS	7840276	7840945	.	+	1	Parent=Os06t0251100-00
Chr06	irgsp1_rep	three_prime_UTR	7840946	7840950	.	+	.	Parent=Os06t0251100-00
Chr06	irgsp1_rep	mRNA	7841699	7844795	.	-	.	ID=Os06t0251200-01;Name=Os06t0251200-01;Locus_id=Os06g0251200;Note=Kelch related domain containing protein.;Transcript_evidence=AK067034 (DDBJ%2C Best hit);ORF_evidence=A2YBB2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069);NIAS_FLcDNA=J013089M24;Expression=AK067034;TENOR=Os06t0251200-01;KEGG=Os06t0251200-01
Chr06	irgsp1_rep	five_prime_UTR	7844646	7844795	.	-	.	Parent=Os06t0251200-01
Chr06	irgsp1_rep	five_prime_UTR	7843331	7843498	.	-	.	Parent=Os06t0251200-01
Chr06	irgsp1_rep	CDS	7842272	7843330	.	-	0	Parent=Os06t0251200-01
Chr06	irgsp1_rep	three_prime_UTR	7841699	7842271	.	-	.	Parent=Os06t0251200-01
Chr06	irgsp1_rep	mRNA	7848384	7854067	.	-	.	ID=Os06t0251700-01;Name=Os06t0251700-01;Locus_id=Os06g0251700;Note=Myosin II heavy chain-like family protein.;Transcript_evidence=AK066534 (DDBJ%2C Best hit);ORF_evidence=Q653N3 (UniProt);InterPro=Myosin II heavy chain-like (IPR009768);NIAS_FLcDNA=J013071H06;Expression=AK066534;TENOR=Os06t0251700-01;KEGG=Os06t0251700-01
Chr06	irgsp1_rep	five_prime_UTR	7853851	7854067	.	-	.	Parent=Os06t0251700-01
Chr06	irgsp1_rep	CDS	7853688	7853850	.	-	0	Parent=Os06t0251700-01
Chr06	irgsp1_rep	CDS	7853485	7853570	.	-	2	Parent=Os06t0251700-01
Chr06	irgsp1_rep	CDS	7851946	7852011	.	-	0	Parent=Os06t0251700-01
Chr06	irgsp1_rep	CDS	7851688	7851858	.	-	0	Parent=Os06t0251700-01
Chr06	irgsp1_rep	CDS	7851319	7851489	.	-	0	Parent=Os06t0251700-01
Chr06	irgsp1_rep	CDS	7851071	7851226	.	-	0	Parent=Os06t0251700-01
Chr06	irgsp1_rep	CDS	7850812	7850958	.	-	0	Parent=Os06t0251700-01
Chr06	irgsp1_rep	CDS	7850594	7850665	.	-	0	Parent=Os06t0251700-01
Chr06	irgsp1_rep	CDS	7849930	7850496	.	-	0	Parent=Os06t0251700-01
Chr06	irgsp1_rep	CDS	7849659	7849843	.	-	0	Parent=Os06t0251700-01
Chr06	irgsp1_rep	CDS	7849100	7849142	.	-	1	Parent=Os06t0251700-01
Chr06	irgsp1_rep	three_prime_UTR	7848384	7849099	.	-	.	Parent=Os06t0251700-01
Chr06	irgsp1_rep	mRNA	7848697	7854050	.	+	.	ID=Os06t0251900-00;Name=Os06t0251900-00;Locus_id=Os06g0251900;Note=Hypothetical protein.;Transcript_evidence=tplb0041j10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0251900-00
Chr06	irgsp1_rep	five_prime_UTR	7848697	7849128	.	+	.	Parent=Os06t0251900-00
Chr06	irgsp1_rep	five_prime_UTR	7849653	7849843	.	+	.	Parent=Os06t0251900-00
Chr06	irgsp1_rep	five_prime_UTR	7849930	7850495	.	+	.	Parent=Os06t0251900-00
Chr06	irgsp1_rep	five_prime_UTR	7850593	7850667	.	+	.	Parent=Os06t0251900-00
Chr06	irgsp1_rep	five_prime_UTR	7850818	7850955	.	+	.	Parent=Os06t0251900-00
Chr06	irgsp1_rep	five_prime_UTR	7851063	7851225	.	+	.	Parent=Os06t0251900-00
Chr06	irgsp1_rep	five_prime_UTR	7851318	7851479	.	+	.	Parent=Os06t0251900-00
Chr06	irgsp1_rep	five_prime_UTR	7851682	7851866	.	+	.	Parent=Os06t0251900-00
Chr06	irgsp1_rep	five_prime_UTR	7851958	7852011	.	+	.	Parent=Os06t0251900-00
Chr06	irgsp1_rep	five_prime_UTR	7853485	7853568	.	+	.	Parent=Os06t0251900-00
Chr06	irgsp1_rep	five_prime_UTR	7853683	7853752	.	+	.	Parent=Os06t0251900-00
Chr06	irgsp1_rep	CDS	7853753	7854050	.	+	0	Parent=Os06t0251900-00
Chr06	irgsp1_rep	mRNA	7920705	7923482	.	-	.	ID=Os06t0252300-01;Name=Os06t0252300-01;Locus_id=Os06g0252300;Note=Hypothetical conserved gene.;Transcript_evidence=AK066448 (DDBJ%2C Best hit);ORF_evidence=Q652W3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C NF-X1-type (IPR000967);NIAS_FLcDNA=J013060O14;Expression=AK066448;TENOR=Os06t0252300-01;KEGG=Os06t0252300-01 (EC:6.3.2.-)
Chr06	irgsp1_rep	CDS	7920939	7923482	.	-	0	Parent=Os06t0252300-01
Chr06	irgsp1_rep	three_prime_UTR	7920705	7920938	.	-	.	Parent=Os06t0252300-01
Chr06	irgsp1_rep	mRNA	7920702	7921425	.	-	.	ID=Os06t0252300-02;Name=Os06t0252300-02;Locus_id=Os06g0252300;Note=Similar to TF-like protein (Fragment).;Transcript_evidence=AK061625 (DDBJ%2C Best hit);ORF_evidence=Q84P66 (UniProt);NIAS_FLcDNA=001-034-D01;Expression=AK061625;TENOR=Os06t0252300-02;KEGG=Os06t0252300-02
Chr06	irgsp1_rep	five_prime_UTR	7921425	7921425	.	-	.	Parent=Os06t0252300-02
Chr06	irgsp1_rep	CDS	7920939	7921424	.	-	0	Parent=Os06t0252300-02
Chr06	irgsp1_rep	three_prime_UTR	7920702	7920938	.	-	.	Parent=Os06t0252300-02
Chr06	irgsp1_rep	mRNA	7933984	7935241	.	+	.	ID=Os06t0252800-01;Name=Os06t0252800-01;Locus_id=Os06g0252800;Note=Similar to STF-1 (Fragment).;Transcript_evidence=AK070507 (DDBJ%2C Best hit);ORF_evidence=F2DDX9 (UniProt);GO=Molecular Function: sulfotransferase activity (GO:0008146);InterPro=Sulfotransferase domain (IPR000863);NIAS_FLcDNA=J023054C04;Expression=AK070507;TENOR=Os06t0252800-01;KEGG=Os06t0252800-01
Chr06	irgsp1_rep	five_prime_UTR	7933984	7933999	.	+	.	Parent=Os06t0252800-01
Chr06	irgsp1_rep	CDS	7934000	7934614	.	+	0	Parent=Os06t0252800-01
Chr06	irgsp1_rep	three_prime_UTR	7934615	7935241	.	+	.	Parent=Os06t0252800-01
Chr06	irgsp1_rep	mRNA	7940956	7941680	.	-	.	ID=Os06t0253100-01;Name=Os06t0253100-01;Locus_id=Os06g0253100;Oryzabase Gene Symbol Synonym(s)=HSP20;Oryzabase Gene Name Synonym(s)=HSP member;Note=Heat shock protein Hsp20 domain containing protein.;Transcript_evidence=AK105317 (DDBJ%2C Best hit);ORF_evidence=Q652V8 (UniProt);InterPro=Heat shock protein Hsp20 (IPR002068),HSP20-like chaperone (IPR008978);NIAS_FLcDNA=001-117-F06;Oryzabase=23571;Expression=AK105317;TENOR=Os06t0253100-01;KEGG=Os06t0253100-01
Chr06	irgsp1_rep	five_prime_UTR	7941609	7941680	.	-	.	Parent=Os06t0253100-01
Chr06	irgsp1_rep	CDS	7941168	7941608	.	-	0	Parent=Os06t0253100-01
Chr06	irgsp1_rep	three_prime_UTR	7940956	7941167	.	-	.	Parent=Os06t0253100-01
Chr06	irgsp1_rep	mRNA	7954357	7958130	.	+	.	ID=Os06t0253350-00;Name=Os06t0253350-00;Locus_id=Os06g0253350;Note=Hypothetical gene.;Transcript_evidence=EU951994 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0253350-00
Chr06	irgsp1_rep	CDS	7954357	7955112	.	+	0	Parent=Os06t0253350-00
Chr06	irgsp1_rep	CDS	7957908	7958130	.	+	0	Parent=Os06t0253350-00
Chr06	irgsp1_rep	mRNA	7964478	7967674	.	-	.	ID=Os06t0253600-00;Name=Os06t0253600-00;Locus_id=Os06g0253600;Note=Similar to secretory protein-like.;Transcript_evidence=BT086215 (DDBJ);ORF_evidence=NP_001151630.1 (RefSeq);InterPro=Gnk2-homologous domain (IPR002902);TENOR=Os06t0253600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	7967659	7967674	.	-	.	Parent=Os06t0253600-00
Chr06	irgsp1_rep	CDS	7966806	7967658	.	-	0	Parent=Os06t0253600-00
Chr06	irgsp1_rep	CDS	7964478	7964608	.	-	2	Parent=Os06t0253600-00
Chr06	irgsp1_rep	mRNA	7982027	7983859	.	+	.	ID=Os06t0254200-00;Name=Os06t0254200-00;Locus_id=Os06g0254200;Note=Similar to Potassium channel protein NKT5.;Transcript_evidence=AK331548 (DDBJ);ORF_evidence=C0JLB0 (UniProt);GO=Biological Process: ion transport (GO:0006811),Biological Process: potassium ion transport (GO:0006813),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: ion channel activity (GO:0005216),Molecular Function: voltage-gated potassium channel activity (GO:0005249);InterPro=Cyclic nucleotide-binding domain (IPR000595),Potassium channel%2C voltage-dependent%2C EAG/ELK/ERG (IPR003938),Ion transport (IPR005821),RmlC-like jelly roll fold (IPR014710),Cyclic nucleotide-binding-like (IPR018490),Potassium channel%2C plant-type (IPR021789);TENOR=Os06t0254200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	7982027	7983859	.	+	0	Parent=Os06t0254200-00
Chr06	irgsp1_rep	mRNA	7983970	7990956	.	-	.	ID=Os06t0254300-01;Name=Os06t0254300-01;Locus_id=Os06g0254300;Note=Similar to EF-hand calcium bining protein.;Transcript_evidence=AK066241 (DDBJ%2C Best hit);ORF_evidence=E7D433 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Caleosin (IPR007736),EF-hand-like domain (IPR011992),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J013052J08;TENOR=Os06t0254300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	7990804	7990956	.	-	.	Parent=Os06t0254300-01
Chr06	irgsp1_rep	CDS	7990728	7990803	.	-	0	Parent=Os06t0254300-01
Chr06	irgsp1_rep	CDS	7990410	7990523	.	-	2	Parent=Os06t0254300-01
Chr06	irgsp1_rep	CDS	7986613	7986698	.	-	2	Parent=Os06t0254300-01
Chr06	irgsp1_rep	CDS	7986349	7986443	.	-	0	Parent=Os06t0254300-01
Chr06	irgsp1_rep	CDS	7985427	7985552	.	-	1	Parent=Os06t0254300-01
Chr06	irgsp1_rep	CDS	7984186	7984366	.	-	1	Parent=Os06t0254300-01
Chr06	irgsp1_rep	three_prime_UTR	7983970	7984185	.	-	.	Parent=Os06t0254300-01
Chr06	irgsp1_rep	mRNA	7983973	7987947	.	-	.	ID=Os06t0254300-02;Name=Os06t0254300-02;Locus_id=Os06g0254300;Note=Caleosin related family protein.;Transcript_evidence=AK101337 (DDBJ%2C Best hit);ORF_evidence=NP_001148328.1 (RefSeq);InterPro=Caleosin (IPR007736);NIAS_FLcDNA=J033034J11;Expression=AK101337;TENOR=Os06t0254300-02;KEGG=Os06t0254300-02
Chr06	irgsp1_rep	five_prime_UTR	7986516	7987947	.	-	.	Parent=Os06t0254300-02
Chr06	irgsp1_rep	CDS	7986349	7986515	.	-	0	Parent=Os06t0254300-02
Chr06	irgsp1_rep	CDS	7985427	7985552	.	-	1	Parent=Os06t0254300-02
Chr06	irgsp1_rep	CDS	7984186	7984366	.	-	1	Parent=Os06t0254300-02
Chr06	irgsp1_rep	three_prime_UTR	7983973	7984185	.	-	.	Parent=Os06t0254300-02
Chr06	irgsp1_rep	mRNA	7983989	7990817	.	-	.	ID=Os06t0254300-03;Name=Os06t0254300-03;Locus_id=Os06g0254300;Note=Similar to EF-hand calcium bining protein.;Transcript_evidence=AK065756 (DDBJ%2C Best hit);ORF_evidence=E7D433 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Caleosin (IPR007736),EF-hand-like domain (IPR011992),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J013036L21;TENOR=Os06t0254300-03
Chr06	irgsp1_rep	five_prime_UTR	7990804	7990817	.	-	.	Parent=Os06t0254300-03
Chr06	irgsp1_rep	CDS	7990728	7990803	.	-	0	Parent=Os06t0254300-03
Chr06	irgsp1_rep	CDS	7990410	7990523	.	-	2	Parent=Os06t0254300-03
Chr06	irgsp1_rep	CDS	7986613	7986698	.	-	2	Parent=Os06t0254300-03
Chr06	irgsp1_rep	CDS	7986349	7986443	.	-	0	Parent=Os06t0254300-03
Chr06	irgsp1_rep	CDS	7985427	7985552	.	-	1	Parent=Os06t0254300-03
Chr06	irgsp1_rep	CDS	7984186	7984366	.	-	1	Parent=Os06t0254300-03
Chr06	irgsp1_rep	three_prime_UTR	7983989	7984185	.	-	.	Parent=Os06t0254300-03
Chr06	irgsp1_rep	mRNA	7996917	8004842	.	-	.	ID=Os06t0254600-01;Name=Os06t0254600-01;Locus_id=Os06g0254600;Oryzabase Gene Name Synonym(s)=C18 hydroxylase;Note=Caleosin related family protein.;Transcript_evidence=AK071531 (DDBJ%2C Best hit);ORF_evidence=E7D433 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Caleosin (IPR007736),EF-hand-like domain (IPR011992),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J023102I11;Oryzabase=23425;TENOR=Os06t0254600-01;KEGG=Os06t0254600-01
Chr06	irgsp1_rep	five_prime_UTR	8004823	8004842	.	-	.	Parent=Os06t0254600-01
Chr06	irgsp1_rep	CDS	8004747	8004822	.	-	0	Parent=Os06t0254600-01
Chr06	irgsp1_rep	CDS	8004433	8004546	.	-	2	Parent=Os06t0254600-01
Chr06	irgsp1_rep	CDS	7999186	7999271	.	-	2	Parent=Os06t0254600-01
Chr06	irgsp1_rep	CDS	7998928	7999022	.	-	0	Parent=Os06t0254600-01
Chr06	irgsp1_rep	CDS	7997927	7998052	.	-	1	Parent=Os06t0254600-01
Chr06	irgsp1_rep	CDS	7997129	7997309	.	-	1	Parent=Os06t0254600-01
Chr06	irgsp1_rep	three_prime_UTR	7996917	7997128	.	-	.	Parent=Os06t0254600-01
Chr06	irgsp1_rep	mRNA	8011879	8014834	.	-	.	ID=Os06t0254700-01;Name=Os06t0254700-01;Locus_id=Os06g0254700;Note=Caleosin related family protein.;Transcript_evidence=AK073727 (DDBJ%2C Best hit),AK104598 (DDBJ%2C Best hit);ORF_evidence=B6TL27 (UniProt);InterPro=Caleosin (IPR007736);NIAS_FLcDNA=J033057G06,006-308-F08;Oryzabase=20205;Expression=AK073727;TENOR=Os06t0254700-01;KEGG=Os06t0254700-01
Chr06	irgsp1_rep	five_prime_UTR	8014627	8014834	.	-	.	Parent=Os06t0254700-01
Chr06	irgsp1_rep	CDS	8014593	8014626	.	-	0	Parent=Os06t0254700-01
Chr06	irgsp1_rep	CDS	8014278	8014433	.	-	2	Parent=Os06t0254700-01
Chr06	irgsp1_rep	CDS	8014056	8014141	.	-	2	Parent=Os06t0254700-01
Chr06	irgsp1_rep	CDS	8013160	8013257	.	-	0	Parent=Os06t0254700-01
Chr06	irgsp1_rep	CDS	8012334	8012459	.	-	1	Parent=Os06t0254700-01
Chr06	irgsp1_rep	CDS	8012086	8012233	.	-	1	Parent=Os06t0254700-01
Chr06	irgsp1_rep	three_prime_UTR	8011879	8012085	.	-	.	Parent=Os06t0254700-01
Chr06	irgsp1_rep	mRNA	8029753	8030718	.	-	.	ID=Os06t0254901-00;Name=Os06t0254901-00;Locus_id=Os06g0254901;Note=Non-protein coding transcript.;Transcript_evidence=CT836210 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os06t0254901-00
Chr06	irgsp1_rep	exon	8030659	8030718	.	-	.	Parent=Os06t0254901-00
Chr06	irgsp1_rep	exon	8029753	8030431	.	-	.	Parent=Os06t0254901-00
Chr06	irgsp1_rep	mRNA	8034209	8035027	.	+	.	ID=Os06t0255001-00;Name=Os06t0255001-00;Locus_id=Os06g0255001;Note=Non-protein coding transcript.;Transcript_evidence=AK376085 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0255001-00
Chr06	irgsp1_rep	exon	8034209	8035027	.	+	.	Parent=Os06t0255001-00
Chr06	irgsp1_rep	mRNA	8038476	8041831	.	-	.	ID=Os06t0255100-01;Name=Os06t0255100-01;Locus_id=Os06g0255100;CGSNL Gene Symbol=2ODD29;CGSNL Gene Name=2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 29;Oryzabase Gene Symbol Synonym(s)=2-ODD29%2C Os2-ODD29%2C Os2ODD29;Oryzabase Gene Name Synonym(s)=2-oxoglutarate-dependent dioxygenase 29;Note=2OG-Fe(II) oxygenase domain containing protein.;Transcript_evidence=AK069993 (DDBJ%2C Best hit);ORF_evidence=B6SUN2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=J023039E01;Oryzabase=22630;Expression=AK069993;TENOR=Os06t0255100-01;KEGG=Os06t0255100-01
Chr06	irgsp1_rep	five_prime_UTR	8041745	8041831	.	-	.	Parent=Os06t0255100-01
Chr06	irgsp1_rep	CDS	8040902	8041744	.	-	0	Parent=Os06t0255100-01
Chr06	irgsp1_rep	CDS	8038676	8038930	.	-	0	Parent=Os06t0255100-01
Chr06	irgsp1_rep	three_prime_UTR	8038476	8038675	.	-	.	Parent=Os06t0255100-01
Chr06	irgsp1_rep	mRNA	8043566	8049994	.	+	.	ID=Os06t0255200-01;Name=Os06t0255200-01;Locus_id=Os06g0255200;Note=Conserved hypothetical protein.;Transcript_evidence=AK122137 (DDBJ%2C Best hit);ORF_evidence=Q656N0 (UniProt);NIAS_FLcDNA=J033136B20;Expression=AK122137;TENOR=Os06t0255200-01;KEGG=Os06t0255200-01
Chr06	irgsp1_rep	five_prime_UTR	8043566	8043808	.	+	.	Parent=Os06t0255200-01
Chr06	irgsp1_rep	five_prime_UTR	8044849	8044860	.	+	.	Parent=Os06t0255200-01
Chr06	irgsp1_rep	CDS	8044861	8044965	.	+	0	Parent=Os06t0255200-01
Chr06	irgsp1_rep	CDS	8045058	8045119	.	+	0	Parent=Os06t0255200-01
Chr06	irgsp1_rep	CDS	8046485	8046690	.	+	1	Parent=Os06t0255200-01
Chr06	irgsp1_rep	CDS	8046778	8047497	.	+	2	Parent=Os06t0255200-01
Chr06	irgsp1_rep	CDS	8047587	8047786	.	+	2	Parent=Os06t0255200-01
Chr06	irgsp1_rep	CDS	8048212	8048355	.	+	0	Parent=Os06t0255200-01
Chr06	irgsp1_rep	three_prime_UTR	8048470	8048537	.	+	.	Parent=Os06t0255200-01
Chr06	irgsp1_rep	three_prime_UTR	8048615	8049429	.	+	.	Parent=Os06t0255200-01
Chr06	irgsp1_rep	three_prime_UTR	8049685	8049782	.	+	.	Parent=Os06t0255200-01
Chr06	irgsp1_rep	three_prime_UTR	8049885	8049994	.	+	.	Parent=Os06t0255200-01
Chr06	irgsp1_rep	mRNA	8046607	8049355	.	+	.	ID=Os06t0255200-02;Name=Os06t0255200-02;Locus_id=Os06g0255200;Note=Hypothetical conserved gene.;Transcript_evidence=AK106539 (DDBJ%2C Best hit);ORF_evidence=Q656N0 (UniProt);NIAS_FLcDNA=002-108-D03;TENOR=Os06t0255200-02
Chr06	irgsp1_rep	five_prime_UTR	8046607	8046608	.	+	.	Parent=Os06t0255200-02
Chr06	irgsp1_rep	CDS	8046609	8046690	.	+	0	Parent=Os06t0255200-02
Chr06	irgsp1_rep	CDS	8046778	8047497	.	+	2	Parent=Os06t0255200-02
Chr06	irgsp1_rep	CDS	8047587	8047786	.	+	2	Parent=Os06t0255200-02
Chr06	irgsp1_rep	CDS	8048207	8048355	.	+	0	Parent=Os06t0255200-02
Chr06	irgsp1_rep	CDS	8048470	8048537	.	+	1	Parent=Os06t0255200-02
Chr06	irgsp1_rep	CDS	8048615	8049355	.	+	2	Parent=Os06t0255200-02
Chr06	irgsp1_rep	mRNA	8063404	8067361	.	+	.	ID=Os06t0255300-01;Name=Os06t0255300-01;Locus_id=Os06g0255300;Oryzabase Gene Symbol Synonym(s)=OsSYD%2C CHR720;Oryzabase Gene Name Synonym(s)=SPLAYED;Note=Conserved hypothetical protein.;Transcript_evidence=AK066536 (DDBJ%2C Best hit);ORF_evidence=B9FSK5 (UniProt);NIAS_FLcDNA=J013070H05;Oryzabase=14180;TENOR=Os06t0255300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	8063404	8064781	.	+	0	Parent=Os06t0255300-01
Chr06	irgsp1_rep	CDS	8064947	8065012	.	+	2	Parent=Os06t0255300-01
Chr06	irgsp1_rep	CDS	8065946	8066971	.	+	2	Parent=Os06t0255300-01
Chr06	irgsp1_rep	CDS	8067076	8067224	.	+	2	Parent=Os06t0255300-01
Chr06	irgsp1_rep	three_prime_UTR	8067225	8067361	.	+	.	Parent=Os06t0255300-01
Chr06	irgsp1_rep	mRNA	8065972	8067344	.	+	.	ID=Os06t0255300-02;Name=Os06t0255300-02;Locus_id=Os06g0255300;Oryzabase Gene Symbol Synonym(s)=OsSYD%2C CHR720;Oryzabase Gene Name Synonym(s)=SPLAYED;Note=Hypothetical conserved gene.;Transcript_evidence=AK060815 (DDBJ%2C Best hit);ORF_evidence=Q656M8 (UniProt);NIAS_FLcDNA=001-033-H09;Oryzabase=14180;Expression=AK060815;TENOR=Os06t0255300-02;KEGG=Os06t0255300-02
Chr06	irgsp1_rep	CDS	8065972	8066971	.	+	0	Parent=Os06t0255300-02
Chr06	irgsp1_rep	CDS	8067076	8067224	.	+	2	Parent=Os06t0255300-02
Chr06	irgsp1_rep	three_prime_UTR	8067225	8067344	.	+	.	Parent=Os06t0255300-02
Chr06	irgsp1_rep	mRNA	8069204	8069983	.	-	.	ID=Os06t0255400-01;Name=Os06t0255400-01;Locus_id=Os06g0255400;Note=Similar to Nudix hydrolase 18%2C mitochondrial precursor (EC 3.6.1.-) (AtNUDT18).;Transcript_evidence=AK064894 (DDBJ%2C Best hit);ORF_evidence=NP_001149038.1 (RefSeq);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=NUDIX hydrolase domain (IPR000086),NUDIX hydrolase domain-like (IPR015797),NUDIX hydrolase%2C conserved site (IPR020084);NIAS_FLcDNA=J013000K23;Expression=AK064894;TENOR=Os06t0255400-01;KEGG=Os06t0255400-01
Chr06	irgsp1_rep	five_prime_UTR	8069869	8069983	.	-	.	Parent=Os06t0255400-01
Chr06	irgsp1_rep	CDS	8069362	8069868	.	-	0	Parent=Os06t0255400-01
Chr06	irgsp1_rep	three_prime_UTR	8069204	8069361	.	-	.	Parent=Os06t0255400-01
Chr06	irgsp1_rep	mRNA	8097302	8104472	.	+	.	ID=Os06t0255700-01;Name=Os06t0255700-01;Locus_id=Os06g0255700;Note=DEAD-like helicase%2C N-terminal domain containing protein.;Transcript_evidence=AK072159 (DDBJ%2C Best hit);ORF_evidence=XP_002305447.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524);InterPro=SNF2-related (IPR000330),Helicase%2C C-terminal (IPR001650),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J013132J03;Expression=AK072159;TENOR=Os06t0255700-01;KEGG=Os06t0255700-01
Chr06	irgsp1_rep	five_prime_UTR	8097302	8097428	.	+	.	Parent=Os06t0255700-01
Chr06	irgsp1_rep	five_prime_UTR	8099528	8099529	.	+	.	Parent=Os06t0255700-01
Chr06	irgsp1_rep	CDS	8099530	8100126	.	+	0	Parent=Os06t0255700-01
Chr06	irgsp1_rep	CDS	8100384	8100695	.	+	0	Parent=Os06t0255700-01
Chr06	irgsp1_rep	CDS	8101024	8101194	.	+	0	Parent=Os06t0255700-01
Chr06	irgsp1_rep	CDS	8101963	8103719	.	+	0	Parent=Os06t0255700-01
Chr06	irgsp1_rep	CDS	8103804	8103807	.	+	1	Parent=Os06t0255700-01
Chr06	irgsp1_rep	three_prime_UTR	8103808	8103880	.	+	.	Parent=Os06t0255700-01
Chr06	irgsp1_rep	three_prime_UTR	8103996	8104472	.	+	.	Parent=Os06t0255700-01
Chr06	irgsp1_rep	mRNA	8116249	8119845	.	+	.	ID=Os06t0255900-01;Name=Os06t0255900-01;Locus_id=Os06g0255900;CGSNL Gene Symbol=EXO70F5;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN F5;Oryzabase Gene Symbol Synonym(s)=OsEXO70F5%2C OsExo70F5%2C OrysaF5_Exo70;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein F5;Note=Conserved hypothetical protein.;Transcript_evidence=AK073580 (DDBJ%2C Best hit);ORF_evidence=A2YBD6 (UniProt);NIAS_FLcDNA=J033047C21;Oryzabase=20335;TENOR=Os06t0255900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	8116249	8116346	.	+	.	Parent=Os06t0255900-01
Chr06	irgsp1_rep	CDS	8116347	8116733	.	+	0	Parent=Os06t0255900-01
Chr06	irgsp1_rep	three_prime_UTR	8116734	8119845	.	+	.	Parent=Os06t0255900-01
Chr06	irgsp1_rep	mRNA	8127437	8129334	.	+	.	ID=Os06t0256000-01;Name=Os06t0256000-01;Locus_id=Os06g0256000;Note=Conserved hypothetical protein.;Transcript_evidence=AK119768 (DDBJ%2C Best hit);ORF_evidence=B9FSK7 (UniProt);NIAS_FLcDNA=002-172-E11;TENOR=Os06t0256000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	8127437	8127437	.	+	.	Parent=Os06t0256000-01
Chr06	irgsp1_rep	CDS	8127438	8127745	.	+	0	Parent=Os06t0256000-01
Chr06	irgsp1_rep	CDS	8127822	8127880	.	+	1	Parent=Os06t0256000-01
Chr06	irgsp1_rep	CDS	8127970	8128244	.	+	2	Parent=Os06t0256000-01
Chr06	irgsp1_rep	CDS	8128414	8128675	.	+	0	Parent=Os06t0256000-01
Chr06	irgsp1_rep	CDS	8128766	8129121	.	+	2	Parent=Os06t0256000-01
Chr06	irgsp1_rep	three_prime_UTR	8129122	8129334	.	+	.	Parent=Os06t0256000-01
Chr06	irgsp1_rep	mRNA	8129580	8134453	.	-	.	ID=Os06t0256200-01;Name=Os06t0256200-01;Locus_id=Os06g0256200;Note=Similar to Keratinocytes proline-rich protein.;Transcript_evidence=AK062020 (DDBJ%2C Best hit);ORF_evidence=B6TD71 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-043-F10;Expression=AK062020;TENOR=Os06t0256200-01;KEGG=Os06t0256200-01
Chr06	irgsp1_rep	five_prime_UTR	8134310	8134453	.	-	.	Parent=Os06t0256200-01
Chr06	irgsp1_rep	five_prime_UTR	8133409	8133420	.	-	.	Parent=Os06t0256200-01
Chr06	irgsp1_rep	CDS	8133172	8133408	.	-	0	Parent=Os06t0256200-01
Chr06	irgsp1_rep	CDS	8132530	8132673	.	-	0	Parent=Os06t0256200-01
Chr06	irgsp1_rep	CDS	8132357	8132425	.	-	0	Parent=Os06t0256200-01
Chr06	irgsp1_rep	CDS	8130832	8131028	.	-	0	Parent=Os06t0256200-01
Chr06	irgsp1_rep	CDS	8130672	8130728	.	-	1	Parent=Os06t0256200-01
Chr06	irgsp1_rep	CDS	8129785	8129965	.	-	1	Parent=Os06t0256200-01
Chr06	irgsp1_rep	three_prime_UTR	8129580	8129784	.	-	.	Parent=Os06t0256200-01
Chr06	irgsp1_rep	mRNA	8129560	8134434	.	-	.	ID=Os06t0256200-02;Name=Os06t0256200-02;Locus_id=Os06g0256200;Note=Similar to THO complex subunit 4.;Transcript_evidence=AK072983 (DDBJ%2C Best hit);ORF_evidence=B6TD71 (UniProt);NIAS_FLcDNA=J023150P17;TENOR=Os06t0256200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	8134310	8134434	.	-	.	Parent=Os06t0256200-02
Chr06	irgsp1_rep	five_prime_UTR	8132698	8133420	.	-	.	Parent=Os06t0256200-02
Chr06	irgsp1_rep	CDS	8132398	8132697	.	-	0	Parent=Os06t0256200-02
Chr06	irgsp1_rep	three_prime_UTR	8132357	8132397	.	-	.	Parent=Os06t0256200-02
Chr06	irgsp1_rep	three_prime_UTR	8130832	8131028	.	-	.	Parent=Os06t0256200-02
Chr06	irgsp1_rep	three_prime_UTR	8130672	8130728	.	-	.	Parent=Os06t0256200-02
Chr06	irgsp1_rep	three_prime_UTR	8129560	8129965	.	-	.	Parent=Os06t0256200-02
Chr06	irgsp1_rep	mRNA	8132208	8134434	.	-	.	ID=Os06t0256200-03;Name=Os06t0256200-03;Locus_id=Os06g0256200;Note=Similar to THO complex subunit 4.;Transcript_evidence=AK068366 (DDBJ%2C Best hit);ORF_evidence=B6TD71 (UniProt);NIAS_FLcDNA=J013145B19;TENOR=Os06t0256200-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	8134310	8134434	.	-	.	Parent=Os06t0256200-03
Chr06	irgsp1_rep	five_prime_UTR	8132698	8133420	.	-	.	Parent=Os06t0256200-03
Chr06	irgsp1_rep	CDS	8132398	8132697	.	-	0	Parent=Os06t0256200-03
Chr06	irgsp1_rep	three_prime_UTR	8132208	8132397	.	-	.	Parent=Os06t0256200-03
Chr06	irgsp1_rep	mRNA	8142728	8147085	.	+	.	ID=Os06t0256300-01;Name=Os06t0256300-01;Locus_id=Os06g0256300;Note=Similar to Calmodulin-binding heat-shock protein.;Transcript_evidence=AK105344 (DDBJ%2C Best hit);ORF_evidence=B4F9H3 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: lipid catabolic process (GO:0016042),Molecular Function: carboxylesterase activity (GO:0004091),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921),Mono-/di-acylglycerol lipase%2C N-terminal (IPR005592);NIAS_FLcDNA=001-118-H08;Expression=AK105344;TENOR=Os06t0256300-01;KEGG=Os06t0256300-01
Chr06	irgsp1_rep	five_prime_UTR	8142728	8142794	.	+	.	Parent=Os06t0256300-01
Chr06	irgsp1_rep	CDS	8142795	8143169	.	+	0	Parent=Os06t0256300-01
Chr06	irgsp1_rep	CDS	8143267	8143602	.	+	0	Parent=Os06t0256300-01
Chr06	irgsp1_rep	CDS	8144302	8144360	.	+	0	Parent=Os06t0256300-01
Chr06	irgsp1_rep	CDS	8144482	8144610	.	+	1	Parent=Os06t0256300-01
Chr06	irgsp1_rep	CDS	8145287	8145422	.	+	1	Parent=Os06t0256300-01
Chr06	irgsp1_rep	CDS	8146583	8146909	.	+	0	Parent=Os06t0256300-01
Chr06	irgsp1_rep	three_prime_UTR	8146910	8147085	.	+	.	Parent=Os06t0256300-01
Chr06	irgsp1_rep	mRNA	8152444	8159313	.	+	.	ID=Os06t0256500-01;Name=Os06t0256500-01;Locus_id=Os06g0256500;CGSNL Gene Symbol=PGI2;CGSNL Gene Name=PHOSPHOGLUCOISOMERASE 2;Oryzabase Gene Symbol Synonym(s)=Pgi2(Pgib)%2C Pgib%2C Pgi_2%2C Pgi2%2C GPI-B%2C PGI-B%2C PHI-B%2C Pgi-b%2C PGI-b;Oryzabase Gene Name Synonym(s)=Phosphoglucoisomerase2%2C Phosphoglucoisomerase 2%2C Phosphoglucoisomerase-2%2C Glucose-6-phosphate isomerase%2C cytosolic B%2C Phosphoglucose isomerase B%2C Phosphohexose isomerase B%2C "glucose-6-phosphate isomerase%2C cytosolic B";Note=Similar to Glucose-6-phosphate isomerase.;Transcript_evidence=AK068236 (DDBJ%2C Best hit);ORF_evidence=B8B0B0 (UniProt);GO=Biological Process: gluconeogenesis (GO:0006094),Biological Process: glycolysis (GO:0006096),Molecular Function: glucose-6-phosphate isomerase activity (GO:0004347);InterPro=Phosphoglucose isomerase (PGI) (IPR001672),Phosphoglucose isomerase%2C conserved site (IPR018189),Phosphoglucose isomerase%2C C-terminal (IPR023096);NIAS_FLcDNA=J013149G03;Oryzabase=759;TENOR=Os06t0256500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	8152444	8152517	.	+	.	Parent=Os06t0256500-01
Chr06	irgsp1_rep	CDS	8152518	8152586	.	+	0	Parent=Os06t0256500-01
Chr06	irgsp1_rep	CDS	8152828	8152887	.	+	0	Parent=Os06t0256500-01
Chr06	irgsp1_rep	CDS	8153042	8153118	.	+	0	Parent=Os06t0256500-01
Chr06	irgsp1_rep	CDS	8153194	8153275	.	+	1	Parent=Os06t0256500-01
Chr06	irgsp1_rep	CDS	8153349	8153396	.	+	0	Parent=Os06t0256500-01
Chr06	irgsp1_rep	CDS	8153699	8153854	.	+	0	Parent=Os06t0256500-01
Chr06	irgsp1_rep	CDS	8153930	8154026	.	+	0	Parent=Os06t0256500-01
Chr06	irgsp1_rep	CDS	8154125	8154167	.	+	2	Parent=Os06t0256500-01
Chr06	irgsp1_rep	CDS	8154558	8154625	.	+	1	Parent=Os06t0256500-01
Chr06	irgsp1_rep	CDS	8154716	8154800	.	+	2	Parent=Os06t0256500-01
Chr06	irgsp1_rep	CDS	8154881	8154929	.	+	1	Parent=Os06t0256500-01
Chr06	irgsp1_rep	CDS	8155151	8155223	.	+	0	Parent=Os06t0256500-01
Chr06	irgsp1_rep	CDS	8155302	8155362	.	+	2	Parent=Os06t0256500-01
Chr06	irgsp1_rep	CDS	8156297	8156363	.	+	1	Parent=Os06t0256500-01
Chr06	irgsp1_rep	CDS	8156433	8156489	.	+	0	Parent=Os06t0256500-01
Chr06	irgsp1_rep	CDS	8156583	8156636	.	+	0	Parent=Os06t0256500-01
Chr06	irgsp1_rep	CDS	8156720	8156848	.	+	0	Parent=Os06t0256500-01
Chr06	irgsp1_rep	CDS	8157375	8157438	.	+	0	Parent=Os06t0256500-01
Chr06	irgsp1_rep	CDS	8157549	8157622	.	+	2	Parent=Os06t0256500-01
Chr06	irgsp1_rep	CDS	8157706	8157759	.	+	0	Parent=Os06t0256500-01
Chr06	irgsp1_rep	CDS	8157879	8157947	.	+	0	Parent=Os06t0256500-01
Chr06	irgsp1_rep	CDS	8158577	8158666	.	+	0	Parent=Os06t0256500-01
Chr06	irgsp1_rep	CDS	8158839	8158946	.	+	0	Parent=Os06t0256500-01
Chr06	irgsp1_rep	CDS	8159059	8159106	.	+	0	Parent=Os06t0256500-01
Chr06	irgsp1_rep	three_prime_UTR	8159107	8159313	.	+	.	Parent=Os06t0256500-01
Chr06	irgsp1_rep	mRNA	8162028	8166874	.	-	.	ID=Os06t0256600-01;Name=Os06t0256600-01;Locus_id=Os06g0256600;Note=Conserved hypothetical protein.;Transcript_evidence=AK288587 (DDBJ%2C Best hit);ORF_evidence=Q8LN58 (UniProt);NIAS_FLcDNA=J090050A10;TENOR=Os06t0256600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	8163618	8166874	.	-	.	Parent=Os06t0256600-01
Chr06	irgsp1_rep	CDS	8163399	8163617	.	-	0	Parent=Os06t0256600-01
Chr06	irgsp1_rep	three_prime_UTR	8162028	8163398	.	-	.	Parent=Os06t0256600-01
Chr06	irgsp1_rep	mRNA	8176855	8177675	.	+	.	ID=Os06t0256800-01;Name=Os06t0256800-01;Locus_id=Os06g0256800;Note=Hypothetical conserved gene.;Transcript_evidence=AK318598 (DDBJ%2C Best hit);ORF_evidence=NP_001057317.1 (RefSeq);NIAS_FLcDNA=J100064N17;TENOR=Os06t0256800-01;KEGG=Os06t0256800-01
Chr06	irgsp1_rep	five_prime_UTR	8176855	8176856	.	+	.	Parent=Os06t0256800-01
Chr06	irgsp1_rep	CDS	8176857	8177498	.	+	0	Parent=Os06t0256800-01
Chr06	irgsp1_rep	three_prime_UTR	8177499	8177675	.	+	.	Parent=Os06t0256800-01
Chr06	irgsp1_rep	mRNA	8178991	8184548	.	-	.	ID=Os06t0256900-01;Name=Os06t0256900-01;Locus_id=Os06g0256900;CGSNL Gene Symbol=GH9B3;CGSNL Gene Name=GLYCOSIDE HYDROLASE 9B3;Oryzabase Gene Symbol Synonym(s)=OsGH9B3;Oryzabase Gene Name Synonym(s)=glycoside hydrolase OsGH9B3%2C glycoside hydrolase 9B3;Note=Similar to Endo-beta-1%2C4-glucanase precursor (EC 3.2.1.4).;Transcript_evidence=AK060686 (DDBJ%2C Best hit);ORF_evidence=Q652F9 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 9 (IPR001701),Six-hairpin glycosidase-like (IPR008928),Six-hairpin glycosidase (IPR012341),Glycoside hydrolase%2C family 9%2C active site (IPR018221);NIAS_FLcDNA=001-029-G12;Oryzabase=11703;Expression=AK060686;TENOR=Os06t0256900-01;KEGG=Os06t0256900-01 (EC:3.2.1.4)
Chr06	irgsp1_rep	five_prime_UTR	8184490	8184548	.	-	.	Parent=Os06t0256900-01
Chr06	irgsp1_rep	CDS	8184295	8184489	.	-	0	Parent=Os06t0256900-01
Chr06	irgsp1_rep	CDS	8183764	8184171	.	-	0	Parent=Os06t0256900-01
Chr06	irgsp1_rep	CDS	8183494	8183586	.	-	0	Parent=Os06t0256900-01
Chr06	irgsp1_rep	CDS	8183247	8183408	.	-	0	Parent=Os06t0256900-01
Chr06	irgsp1_rep	CDS	8180295	8180409	.	-	0	Parent=Os06t0256900-01
Chr06	irgsp1_rep	CDS	8180041	8180204	.	-	2	Parent=Os06t0256900-01
Chr06	irgsp1_rep	CDS	8179451	8179807	.	-	0	Parent=Os06t0256900-01
Chr06	irgsp1_rep	three_prime_UTR	8178991	8179450	.	-	.	Parent=Os06t0256900-01
Chr06	irgsp1_rep	mRNA	8179502	8184497	.	+	.	ID=Os06t0257050-00;Name=Os06t0257050-00;Locus_id=Os06g0257050;Note=Hypothetical protein.;Transcript_evidence=tplb0042g22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0257050-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	8179502	8179862	.	+	.	Parent=Os06t0257050-00
Chr06	irgsp1_rep	five_prime_UTR	8180084	8180178	.	+	.	Parent=Os06t0257050-00
Chr06	irgsp1_rep	five_prime_UTR	8183078	8183437	.	+	.	Parent=Os06t0257050-00
Chr06	irgsp1_rep	five_prime_UTR	8183715	8183745	.	+	.	Parent=Os06t0257050-00
Chr06	irgsp1_rep	CDS	8183746	8184160	.	+	0	Parent=Os06t0257050-00
Chr06	irgsp1_rep	CDS	8184277	8184317	.	+	2	Parent=Os06t0257050-00
Chr06	irgsp1_rep	three_prime_UTR	8184318	8184497	.	+	.	Parent=Os06t0257050-00
Chr06	irgsp1_rep	mRNA	8194555	8198058	.	-	.	ID=Os06t0257200-01;Name=Os06t0257200-01;Locus_id=Os06g0257200;Note=Similar to Signal recognition particle 9 kDa protein.;Transcript_evidence=AK068347 (DDBJ%2C Best hit);ORF_evidence=A6MZW6 (UniProt);NIAS_FLcDNA=J013150F06;TENOR=Os06t0257200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	8197895	8198058	.	-	.	Parent=Os06t0257200-01
Chr06	irgsp1_rep	CDS	8197598	8197894	.	-	0	Parent=Os06t0257200-01
Chr06	irgsp1_rep	three_prime_UTR	8194916	8197597	.	-	.	Parent=Os06t0257200-01
Chr06	irgsp1_rep	three_prime_UTR	8194555	8194822	.	-	.	Parent=Os06t0257200-01
Chr06	irgsp1_rep	mRNA	8230555	8232480	.	-	.	ID=Os06t0257450-01;Name=Os06t0257450-01;Locus_id=Os06g0257450;RAP-DB Gene Symbol Synonym(s)=ST1%2C st1(ws1)%2C ws1%2C st1%2C RNRS1%2C rnrs1;RAP-DB Gene Name Synonym(s)=STRIPE 1%2C stripe1%2C stripe 1%2C stripe-1%2C ribonucleotide reductase small subunit 1;CGSNL Gene Symbol=ST1;CGSNL Gene Name=STRIPE 1;Oryzabase Gene Symbol Synonym(s)=st1(ws1)%2C ws1%2C st1%2C RNRS1%2C OsRNRS1%2C rnrs1%2C RNRS%2C SDL/RNRS1%2C SDL;Oryzabase Gene Name Synonym(s)=stripe1%2C stripe 1%2C stripe-1%2C ribonucleotide reductase small subunit 1%2C stripe and drooping leaf;Note=Ribonucleotide reductase%2C Chloroplast biogenesis;Transcript_evidence=EU602345 (Genbank);ORF_evidence=Q652F0 (UniProt);GO=Biological Process: deoxyribonucleoside diphosphate metabolic process (GO:0009186),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: ribonucleoside-diphosphate reductase activity (GO:0004748),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: transition metal ion binding (GO:0046914);InterPro=Ribonucleotide reductase (IPR000358),Ferritin/ribonucleotide reductase-like (IPR009078),Ribonucleotide reductase-related (IPR012348);Manual Curation=June 8%2C 2009;Literature_PMID=19297585;Oryzabase=758;TENOR=Os06t0257450-00
Chr06	irgsp1_rep	five_prime_UTR	8232065	8232480	.	-	.	Parent=Os06t0257450-01
Chr06	irgsp1_rep	CDS	8231045	8232064	.	-	0	Parent=Os06t0257450-01
Chr06	irgsp1_rep	three_prime_UTR	8230555	8231044	.	-	.	Parent=Os06t0257450-01
Chr06	irgsp1_rep	mRNA	8236902	8238699	.	+	.	ID=Os06t0257600-01;Name=Os06t0257600-01;Locus_id=Os06g0257600;CGSNL Gene Symbol=GELP82;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 82;Oryzabase Gene Symbol Synonym(s)=OsGELP82;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 82;Note=Esterase%2C SGNH hydrolase-type domain containing protein.;Transcript_evidence=AK108686 (DDBJ%2C Best hit);ORF_evidence=B4FSE4 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087),Esterase%2C SGNH hydrolase-type (IPR013830);NIAS_FLcDNA=002-149-C04;Oryzabase=11032;Expression=AK108686;TENOR=Os06t0257600-01;KEGG=Os06t0257600-01
Chr06	irgsp1_rep	five_prime_UTR	8236902	8236959	.	+	.	Parent=Os06t0257600-01
Chr06	irgsp1_rep	CDS	8236960	8237212	.	+	0	Parent=Os06t0257600-01
Chr06	irgsp1_rep	CDS	8237301	8237428	.	+	2	Parent=Os06t0257600-01
Chr06	irgsp1_rep	CDS	8237535	8237661	.	+	0	Parent=Os06t0257600-01
Chr06	irgsp1_rep	CDS	8237753	8237865	.	+	2	Parent=Os06t0257600-01
Chr06	irgsp1_rep	CDS	8237953	8238504	.	+	0	Parent=Os06t0257600-01
Chr06	irgsp1_rep	three_prime_UTR	8238505	8238699	.	+	.	Parent=Os06t0257600-01
Chr06	irgsp1_rep	mRNA	8251038	8252390	.	+	.	ID=Os06t0258000-01;Name=Os06t0258000-01;Locus_id=Os06g0258000;Oryzabase Gene Symbol Synonym(s)=R2R3-MYB;Note=Similar to Typical P-type R2R3 Myb protein (Fragment).;Transcript_evidence=AK107483 (DDBJ%2C Best hit);ORF_evidence=A2YBF0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=002-129-C06;Oryzabase=16302;Expression=AK107483;TENOR=Os06t0258000-01;KEGG=Os06t0258000-01
Chr06	irgsp1_rep	five_prime_UTR	8251038	8251215	.	+	.	Parent=Os06t0258000-01
Chr06	irgsp1_rep	CDS	8251216	8251348	.	+	0	Parent=Os06t0258000-01
Chr06	irgsp1_rep	CDS	8251445	8251574	.	+	2	Parent=Os06t0258000-01
Chr06	irgsp1_rep	CDS	8251669	8252209	.	+	1	Parent=Os06t0258000-01
Chr06	irgsp1_rep	three_prime_UTR	8252210	8252390	.	+	.	Parent=Os06t0258000-01
Chr06	irgsp1_rep	mRNA	8283058	8283486	.	+	.	ID=Os06t0258500-00;Name=Os06t0258500-00;Locus_id=Os06g0258500;Note=Myb transcription factor domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10MG5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);TENOR=Os06t0258500-00;KEGG=Os06t0258500-00
Chr06	irgsp1_rep	CDS	8283058	8283486	.	+	0	Parent=Os06t0258500-00
Chr06	irgsp1_rep	mRNA	8301780	8316881	.	+	.	ID=Os06t0258900-01;Name=Os06t0258900-01;Locus_id=Os06g0258900;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK067794 (DDBJ%2C Best hit),AK099384 (DDBJ%2C Best hit);ORF_evidence=B8B0B8 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: pentose-phosphate shunt (GO:0006098),Biological Process: valine metabolic process (GO:0006573),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity (GO:0004616),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: 3-hydroxyisobutyrate dehydrogenase activity (GO:0008442),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: aldehyde-lyase activity (GO:0016832),Molecular Function: coenzyme binding (GO:0050662);InterPro=Ketose-bisphosphate aldolase%2C class-II (IPR000771),3-hydroxyisobutyrate dehydrogenase-related%2C conserved site (IPR002204),6-phosphogluconate dehydrogenase%2C NADP-binding (IPR006115),6-phosphogluconate dehydrogenase%2C C-terminal-like (IPR008927),Protein of unknown function%2C DUF1537 (IPR010737),Dehydrogenase%2C multihelical (IPR013328),Aldolase-type TIM barrel (IPR013785),3-hydroxyacid dehydrogenase/reductase (IPR015815),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013116E07,J033076F23;TENOR=Os06t0258900-01
Chr06	irgsp1_rep	five_prime_UTR	8301780	8301934	.	+	.	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8301935	8302045	.	+	0	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8302152	8302224	.	+	0	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8302468	8302545	.	+	2	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8302626	8302706	.	+	2	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8302889	8302962	.	+	2	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8303048	8303102	.	+	0	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8303214	8303262	.	+	2	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8303405	8303542	.	+	1	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8303638	8303719	.	+	1	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8304314	8304392	.	+	0	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8304540	8304583	.	+	2	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8304662	8304856	.	+	0	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8305293	8305368	.	+	0	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8306610	8306690	.	+	2	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8306806	8306886	.	+	2	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8307311	8307387	.	+	2	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8307490	8307544	.	+	0	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8307634	8307682	.	+	2	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8307855	8307992	.	+	1	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8308580	8308661	.	+	1	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8308747	8308825	.	+	0	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8309068	8309114	.	+	2	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8309197	8309411	.	+	0	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8309546	8309633	.	+	1	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8309712	8309831	.	+	0	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8309914	8310032	.	+	0	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8310147	8310219	.	+	1	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8310295	8310414	.	+	0	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8310721	8310789	.	+	0	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8310939	8311109	.	+	0	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8311187	8311234	.	+	0	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8311375	8311516	.	+	0	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8312427	8312524	.	+	2	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8312867	8313011	.	+	0	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8313111	8313196	.	+	2	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8313295	8313405	.	+	0	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8313639	8313713	.	+	0	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8314019	8314084	.	+	0	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8314219	8314407	.	+	0	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8314498	8314608	.	+	0	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8315799	8315879	.	+	0	Parent=Os06t0258900-01
Chr06	irgsp1_rep	CDS	8316375	8316554	.	+	0	Parent=Os06t0258900-01
Chr06	irgsp1_rep	three_prime_UTR	8316555	8316881	.	+	.	Parent=Os06t0258900-01
Chr06	irgsp1_rep	mRNA	8310177	8316896	.	+	.	ID=Os06t0258900-02;Name=Os06t0258900-02;Locus_id=Os06g0258900;Note=Similar to predicted protein.;Transcript_evidence=AK060181 (DDBJ%2C Best hit);ORF_evidence=NP_001117303.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: aldehyde-lyase activity (GO:0016832);InterPro=Ketose-bisphosphate aldolase%2C class-II (IPR000771),Protein of unknown function%2C DUF1537 (IPR010737),Aldolase-type TIM barrel (IPR013785),3-hydroxyacid dehydrogenase/reductase (IPR015815);NIAS_FLcDNA=001-001-B12;Expression=AK060181;TENOR=Os06t0258900-02;KEGG=Os06t0258900-02
Chr06	irgsp1_rep	five_prime_UTR	8310177	8310177	.	+	.	Parent=Os06t0258900-02
Chr06	irgsp1_rep	CDS	8310178	8310219	.	+	0	Parent=Os06t0258900-02
Chr06	irgsp1_rep	CDS	8310295	8310414	.	+	0	Parent=Os06t0258900-02
Chr06	irgsp1_rep	CDS	8310721	8310789	.	+	0	Parent=Os06t0258900-02
Chr06	irgsp1_rep	CDS	8310939	8311109	.	+	0	Parent=Os06t0258900-02
Chr06	irgsp1_rep	CDS	8311187	8311234	.	+	0	Parent=Os06t0258900-02
Chr06	irgsp1_rep	CDS	8311375	8311516	.	+	0	Parent=Os06t0258900-02
Chr06	irgsp1_rep	CDS	8312427	8312524	.	+	2	Parent=Os06t0258900-02
Chr06	irgsp1_rep	CDS	8312867	8313011	.	+	0	Parent=Os06t0258900-02
Chr06	irgsp1_rep	CDS	8313111	8313196	.	+	2	Parent=Os06t0258900-02
Chr06	irgsp1_rep	CDS	8313295	8313405	.	+	0	Parent=Os06t0258900-02
Chr06	irgsp1_rep	CDS	8313639	8313713	.	+	0	Parent=Os06t0258900-02
Chr06	irgsp1_rep	CDS	8314019	8314092	.	+	0	Parent=Os06t0258900-02
Chr06	irgsp1_rep	CDS	8314219	8314261	.	+	1	Parent=Os06t0258900-02
Chr06	irgsp1_rep	three_prime_UTR	8314262	8314407	.	+	.	Parent=Os06t0258900-02
Chr06	irgsp1_rep	three_prime_UTR	8314498	8314608	.	+	.	Parent=Os06t0258900-02
Chr06	irgsp1_rep	three_prime_UTR	8315799	8315879	.	+	.	Parent=Os06t0258900-02
Chr06	irgsp1_rep	three_prime_UTR	8316375	8316896	.	+	.	Parent=Os06t0258900-02
Chr06	irgsp1_rep	mRNA	8319050	8321692	.	-	.	ID=Os06t0259000-01;Name=Os06t0259000-01;Locus_id=Os06g0259000;Note=Hypothetical conserved gene.;Transcript_evidence=AK243278 (DDBJ%2C Best hit);ORF_evidence=Q652R9 (UniProt);GO=Biological Process: phosphatidylinositol metabolic process (GO:0046488),Molecular Function: phosphatidylinositol phosphate kinase activity (GO:0016307);InterPro=Phosphatidylinositol-4-phosphate 5-kinase%2C core (IPR002498),Phosphatidylinositol-4-phosphate 5-kinase%2C core%2C subgroup (IPR016034),Phosphatidylinositol-4-phosphate 5-kinase (IPR023610);NIAS_FLcDNA=J100050M10;Oryzabase=23562;TENOR=Os06t0259000-01;KEGG=Os06t0259000-01 (EC:2.7.1.68)
Chr06	irgsp1_rep	five_prime_UTR	8321692	8321692	.	-	.	Parent=Os06t0259000-01
Chr06	irgsp1_rep	CDS	8321644	8321691	.	-	0	Parent=Os06t0259000-01
Chr06	irgsp1_rep	CDS	8320078	8321526	.	-	0	Parent=Os06t0259000-01
Chr06	irgsp1_rep	CDS	8319661	8319987	.	-	0	Parent=Os06t0259000-01
Chr06	irgsp1_rep	three_prime_UTR	8319050	8319660	.	-	.	Parent=Os06t0259000-01
Chr06	irgsp1_rep	mRNA	8370035	8370657	.	-	.	ID=Os06t0259850-00;Name=Os06t0259850-00;Locus_id=Os06g0259850;Note=Similar to TMV response-related protein.;Transcript_evidence=AK370373 (DDBJ);ORF_evidence=NP_001152577.1 (RefSeq);TENOR=Os06t0259850-00
Chr06	irgsp1_rep	five_prime_UTR	8370521	8370657	.	-	.	Parent=Os06t0259850-00
Chr06	irgsp1_rep	CDS	8370035	8370520	.	-	0	Parent=Os06t0259850-00
Chr06	irgsp1_rep	mRNA	8372480	8372883	.	-	.	ID=Os06t0259901-00;Name=Os06t0259901-00;Locus_id=Os06g0259901;Note=Non-protein coding transcript.;Transcript_evidence=CT836249 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os06t0259901-00
Chr06	irgsp1_rep	exon	8372480	8372883	.	-	.	Parent=Os06t0259901-00
Chr06	irgsp1_rep	mRNA	8374547	8376921	.	-	.	ID=Os06t0260000-01;Name=Os06t0260000-01;Locus_id=Os06g0260000;Note=Conserved hypothetical protein.;Transcript_evidence=AK243582 (DDBJ%2C Best hit);ORF_evidence=NP_001057325.2 (RefSeq);NIAS_FLcDNA=J100082N18;TENOR=Os06t0260000-01;KEGG=Os06t0260000-01
Chr06	irgsp1_rep	five_prime_UTR	8376775	8376921	.	-	.	Parent=Os06t0260000-01
Chr06	irgsp1_rep	CDS	8375890	8376774	.	-	0	Parent=Os06t0260000-01
Chr06	irgsp1_rep	three_prime_UTR	8374547	8375889	.	-	.	Parent=Os06t0260000-01
Chr06	irgsp1_rep	mRNA	8408744	8410105	.	+	.	ID=Os06t0260250-00;Name=Os06t0260250-00;Locus_id=Os06g0260250;Note=Hypothetical protein.;Transcript_evidence=tplb0030b11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0260250-00
Chr06	irgsp1_rep	five_prime_UTR	8408744	8408745	.	+	.	Parent=Os06t0260250-00
Chr06	irgsp1_rep	CDS	8408746	8410105	.	+	0	Parent=Os06t0260250-00
Chr06	irgsp1_rep	mRNA	8408770	8410450	.	-	.	ID=Os06t0260500-00;Name=Os06t0260500-00;Locus_id=Os06g0260500;Note=Similar to 3-ketoacyl-CoA synthase.;Transcript_evidence=AK333184 (DDBJ);ORF_evidence=A2YBG0 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: metabolic process (GO:0008152),Biological Process: lipid biosynthetic process (GO:0008610),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Very-long-chain 3-ketoacyl-CoA synthase (IPR012392),FAE1/Type III polyketide synthase-like protein (IPR013601),3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (IPR013747),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);TENOR=Os06t0260500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	8410031	8410450	.	-	0	Parent=Os06t0260500-00
Chr06	irgsp1_rep	CDS	8408770	8409933	.	-	0	Parent=Os06t0260500-00
Chr06	irgsp1_rep	mRNA	8453429	8454089	.	-	.	ID=Os06t0261300-01;Name=Os06t0261300-01;Locus_id=Os06g0261300;Note=Conserved hypothetical protein.;Transcript_evidence=AK073534 (DDBJ%2C Best hit),AK111122 (DDBJ%2C Best hit);ORF_evidence=Q60EN5 (UniProt);NIAS_FLcDNA=J033042E22,002-176-C03;Expression=AK073534;TENOR=Os06t0261300-01;KEGG=Os06t0261300-01
Chr06	irgsp1_rep	five_prime_UTR	8453941	8454089	.	-	.	Parent=Os06t0261300-01
Chr06	irgsp1_rep	CDS	8453608	8453940	.	-	0	Parent=Os06t0261300-01
Chr06	irgsp1_rep	three_prime_UTR	8453429	8453607	.	-	.	Parent=Os06t0261300-01
Chr06	irgsp1_rep	mRNA	8575747	8578622	.	-	.	ID=Os06t0262501-01;Name=Os06t0262501-01;Locus_id=Os06g0262501;Note=Hypothetical gene.;Transcript_evidence=AK288977 (DDBJ%2C Best hit);ORF_evidence=Q01M89 (UniProt);NIAS_FLcDNA=J090085K17;TENOR=Os06t0262501-01;KEGG=Os06t0262501-01
Chr06	irgsp1_rep	five_prime_UTR	8578265	8578622	.	-	.	Parent=Os06t0262501-01
Chr06	irgsp1_rep	CDS	8577992	8578264	.	-	0	Parent=Os06t0262501-01
Chr06	irgsp1_rep	three_prime_UTR	8575747	8577991	.	-	.	Parent=Os06t0262501-01
Chr06	irgsp1_rep	mRNA	8598245	8599912	.	-	.	ID=Os06t0262800-01;Name=Os06t0262800-01;Locus_id=Os06g0262800;Note=Similar to Very-long-chain fatty acid condensing enzyme CUT1.;Transcript_evidence=AK068185 (DDBJ%2C Best hit);ORF_evidence=B8B0C4 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: metabolic process (GO:0008152),Biological Process: lipid biosynthetic process (GO:0008610),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Very-long-chain 3-ketoacyl-CoA synthase (IPR012392),FAE1/Type III polyketide synthase-like protein (IPR013601),3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (IPR013747),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);NIAS_FLcDNA=J013135C17;Expression=AK068185;TENOR=Os06t0262800-01;KEGG=Os06t0262800-01
Chr06	irgsp1_rep	five_prime_UTR	8599830	8599912	.	-	.	Parent=Os06t0262800-01
Chr06	irgsp1_rep	CDS	8598345	8599829	.	-	0	Parent=Os06t0262800-01
Chr06	irgsp1_rep	three_prime_UTR	8598245	8598344	.	-	.	Parent=Os06t0262800-01
Chr06	irgsp1_rep	mRNA	8645354	8646733	.	+	.	ID=Os06t0263450-00;Name=Os06t0263450-00;Locus_id=Os06g0263450;Note=Hypothetical protein.;Transcript_evidence=tplb0030b11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0263450-00
Chr06	irgsp1_rep	CDS	8645354	8645710	.	+	0	Parent=Os06t0263450-00
Chr06	irgsp1_rep	three_prime_UTR	8645711	8646733	.	+	.	Parent=Os06t0263450-00
Chr06	irgsp1_rep	mRNA	8704847	8706785	.	-	.	ID=Os06t0263801-01;Name=Os06t0263801-01;Locus_id=Os06g0263801;Note=Hypothetical gene.;Transcript_evidence=AK241249 (DDBJ%2C Best hit),AK287836 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065129J23,J065191O19;TENOR=Os06t0263801-01
Chr06	irgsp1_rep	five_prime_UTR	8706082	8706785	.	-	.	Parent=Os06t0263801-01
Chr06	irgsp1_rep	five_prime_UTR	8705763	8705982	.	-	.	Parent=Os06t0263801-01
Chr06	irgsp1_rep	CDS	8704847	8705762	.	-	0	Parent=Os06t0263801-01
Chr06	irgsp1_rep	mRNA	8704831	8706949	.	+	.	ID=Os06t0264200-01;Name=Os06t0264200-01;Locus_id=Os06g0264200;RAP-DB Gene Symbol Synonym(s)=OsCOL16;RAP-DB Gene Name Synonym(s)=CONSTANS-like protein 16;Oryzabase Gene Symbol Synonym(s)=OsBBX17%2C BBX17%2C OsL%2C OsCCT20%2C CCT20%2C OsCOL16%2C COL16;Oryzabase Gene Name Synonym(s)=B-box-containing protein 17%2C CCT domain-containing gene 20%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 20%2C CCT domain protein 20%2C CONSTANS-like protein 16;Note=CONSTANS-like protein%2C Transcription factor%2C Repression of flowering%2C Regulation of plant height and grain yield;Transcript_evidence=Inferred from literature;ORF_evidence=A3BAG5;GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=B-box-type zinc finger (IPR000315),CCT domain (IPR010402);Manual Curation=June 26%2C 2020;Literature_PMID=28554475;Oryzabase=11648;TENOR=Os06t0264200-00;KEGG=Os06t0264200-00;Subcellular location=nucleus (GO:0005634)
Chr06	irgsp1_rep	five_prime_UTR	8704831	8704896	.	+	.	Parent=Os06t0264200-01
Chr06	irgsp1_rep	CDS	8704897	8705982	.	+	0	Parent=Os06t0264200-01
Chr06	irgsp1_rep	CDS	8706082	8706342	.	+	0	Parent=Os06t0264200-01
Chr06	irgsp1_rep	three_prime_UTR	8706343	8706949	.	+	.	Parent=Os06t0264200-01
Chr06	irgsp1_rep	mRNA	8720602	8726645	.	+	.	ID=Os06t0264300-01;Name=Os06t0264300-01;Locus_id=Os06g0264300;Oryzabase Gene Symbol Synonym(s)=Rad23;Note=Similar to RAD23%2C isoform I.;Transcript_evidence=AK073271 (DDBJ%2C Best hit);ORF_evidence=B6T711 (UniProt);GO=Biological Process: nucleotide-excision repair (GO:0006289),Biological Process: proteasomal ubiquitin-dependent protein catabolic process (GO:0043161),Cellular Component: nucleus (GO:0005634),Molecular Function: damaged DNA binding (GO:0003684),Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal (IPR000449),Ubiquitin (IPR000626),UV excision repair protein Rad23 (IPR004806),Heat shock chaperonin-binding (IPR006636),UBA-like (IPR009060),XPC-binding domain (IPR015360),Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (IPR015940),Ubiquitin supergroup (IPR019955);NIAS_FLcDNA=J033029B07;Oryzabase=21268;Expression=AK073271;TENOR=Os06t0264300-01;KEGG=Os06t0264300-01
Chr06	irgsp1_rep	five_prime_UTR	8720602	8720749	.	+	.	Parent=Os06t0264300-01
Chr06	irgsp1_rep	CDS	8720750	8720815	.	+	0	Parent=Os06t0264300-01
Chr06	irgsp1_rep	CDS	8721303	8721464	.	+	0	Parent=Os06t0264300-01
Chr06	irgsp1_rep	CDS	8722211	8722264	.	+	0	Parent=Os06t0264300-01
Chr06	irgsp1_rep	CDS	8722740	8722813	.	+	0	Parent=Os06t0264300-01
Chr06	irgsp1_rep	CDS	8722889	8722969	.	+	1	Parent=Os06t0264300-01
Chr06	irgsp1_rep	CDS	8724085	8724262	.	+	1	Parent=Os06t0264300-01
Chr06	irgsp1_rep	CDS	8724519	8724689	.	+	0	Parent=Os06t0264300-01
Chr06	irgsp1_rep	CDS	8725296	8725385	.	+	0	Parent=Os06t0264300-01
Chr06	irgsp1_rep	CDS	8725467	8725514	.	+	0	Parent=Os06t0264300-01
Chr06	irgsp1_rep	CDS	8725630	8725745	.	+	0	Parent=Os06t0264300-01
Chr06	irgsp1_rep	CDS	8725838	8725916	.	+	1	Parent=Os06t0264300-01
Chr06	irgsp1_rep	CDS	8726284	8726406	.	+	0	Parent=Os06t0264300-01
Chr06	irgsp1_rep	three_prime_UTR	8726407	8726645	.	+	.	Parent=Os06t0264300-01
Chr06	irgsp1_rep	mRNA	8720636	8726617	.	+	.	ID=Os06t0264300-02;Name=Os06t0264300-02;Locus_id=Os06g0264300;Oryzabase Gene Symbol Synonym(s)=Rad23;Note=Similar to RAD23%2C isoform I.;Transcript_evidence=AK061556 (DDBJ%2C Best hit);ORF_evidence=B6T711 (UniProt);GO=Biological Process: nucleotide-excision repair (GO:0006289),Biological Process: proteasomal ubiquitin-dependent protein catabolic process (GO:0043161),Cellular Component: nucleus (GO:0005634),Molecular Function: damaged DNA binding (GO:0003684),Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal (IPR000449),Ubiquitin (IPR000626),UV excision repair protein Rad23 (IPR004806),Heat shock chaperonin-binding (IPR006636),UBA-like (IPR009060),XPC-binding domain (IPR015360),Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (IPR015940),Ubiquitin supergroup (IPR019955);NIAS_FLcDNA=006-311-C08;Oryzabase=21268;Expression=AK061556;TENOR=Os06t0264300-02;KEGG=Os06t0264300-02
Chr06	irgsp1_rep	five_prime_UTR	8720636	8720749	.	+	.	Parent=Os06t0264300-02
Chr06	irgsp1_rep	CDS	8720750	8720815	.	+	0	Parent=Os06t0264300-02
Chr06	irgsp1_rep	CDS	8721303	8721464	.	+	0	Parent=Os06t0264300-02
Chr06	irgsp1_rep	CDS	8722211	8722264	.	+	0	Parent=Os06t0264300-02
Chr06	irgsp1_rep	CDS	8722740	8722813	.	+	0	Parent=Os06t0264300-02
Chr06	irgsp1_rep	CDS	8722889	8722969	.	+	1	Parent=Os06t0264300-02
Chr06	irgsp1_rep	CDS	8724085	8724262	.	+	1	Parent=Os06t0264300-02
Chr06	irgsp1_rep	CDS	8724519	8724689	.	+	0	Parent=Os06t0264300-02
Chr06	irgsp1_rep	CDS	8725296	8725385	.	+	0	Parent=Os06t0264300-02
Chr06	irgsp1_rep	CDS	8725467	8725514	.	+	0	Parent=Os06t0264300-02
Chr06	irgsp1_rep	CDS	8725630	8725745	.	+	0	Parent=Os06t0264300-02
Chr06	irgsp1_rep	CDS	8725838	8725916	.	+	1	Parent=Os06t0264300-02
Chr06	irgsp1_rep	CDS	8726284	8726406	.	+	0	Parent=Os06t0264300-02
Chr06	irgsp1_rep	three_prime_UTR	8726407	8726617	.	+	.	Parent=Os06t0264300-02
Chr06	irgsp1_rep	mRNA	8724658	8726645	.	+	.	ID=Os06t0264300-03;Name=Os06t0264300-03;Locus_id=Os06g0264300;Oryzabase Gene Symbol Synonym(s)=Rad23;Note=Similar to DNA repair protein RAD23.;Transcript_evidence=AK062241 (DDBJ%2C Best hit);ORF_evidence=B6TKL2 (UniProt);GO=Biological Process: nucleotide-excision repair (GO:0006289),Biological Process: proteasomal ubiquitin-dependent protein catabolic process (GO:0043161),Cellular Component: nucleus (GO:0005634),Molecular Function: damaged DNA binding (GO:0003684),Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal (IPR000449),UV excision repair protein Rad23 (IPR004806),Heat shock chaperonin-binding (IPR006636),UBA-like (IPR009060),XPC-binding domain (IPR015360),Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (IPR015940);NIAS_FLcDNA=001-047-E09;Oryzabase=21268;Expression=AK062241;TENOR=Os06t0264300-03;KEGG=Os06t0264300-03
Chr06	irgsp1_rep	five_prime_UTR	8724658	8724659	.	+	.	Parent=Os06t0264300-03
Chr06	irgsp1_rep	CDS	8724660	8724689	.	+	0	Parent=Os06t0264300-03
Chr06	irgsp1_rep	CDS	8725296	8725385	.	+	0	Parent=Os06t0264300-03
Chr06	irgsp1_rep	CDS	8725467	8725514	.	+	0	Parent=Os06t0264300-03
Chr06	irgsp1_rep	CDS	8725630	8725745	.	+	0	Parent=Os06t0264300-03
Chr06	irgsp1_rep	CDS	8725838	8725916	.	+	1	Parent=Os06t0264300-03
Chr06	irgsp1_rep	CDS	8726284	8726406	.	+	0	Parent=Os06t0264300-03
Chr06	irgsp1_rep	three_prime_UTR	8726407	8726645	.	+	.	Parent=Os06t0264300-03
Chr06	irgsp1_rep	mRNA	8724519	8726623	.	-	.	ID=Os06t0264366-00;Name=Os06t0264366-00;Locus_id=Os06g0264366;Note=Hypothetical gene.;Transcript_evidence=BT017634 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0264366-00;KEGG=Os06t0264366-00
Chr06	irgsp1_rep	five_prime_UTR	8726504	8726623	.	-	.	Parent=Os06t0264366-00
Chr06	irgsp1_rep	five_prime_UTR	8726283	8726432	.	-	.	Parent=Os06t0264366-00
Chr06	irgsp1_rep	five_prime_UTR	8725844	8725915	.	-	.	Parent=Os06t0264366-00
Chr06	irgsp1_rep	CDS	8725823	8725843	.	-	0	Parent=Os06t0264366-00
Chr06	irgsp1_rep	CDS	8725606	8725723	.	-	0	Parent=Os06t0264366-00
Chr06	irgsp1_rep	CDS	8725292	8725407	.	-	2	Parent=Os06t0264366-00
Chr06	irgsp1_rep	three_prime_UTR	8725274	8725291	.	-	.	Parent=Os06t0264366-00
Chr06	irgsp1_rep	three_prime_UTR	8724519	8724671	.	-	.	Parent=Os06t0264366-00
Chr06	irgsp1_rep	mRNA	8739414	8740499	.	-	.	ID=Os06t0264432-00;Name=Os06t0264432-00;Locus_id=Os06g0264432;Note=Hypothetical gene.;Transcript_evidence=BT066557 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0264432-00
Chr06	irgsp1_rep	five_prime_UTR	8740499	8740499	.	-	.	Parent=Os06t0264432-00
Chr06	irgsp1_rep	CDS	8739414	8740498	.	-	0	Parent=Os06t0264432-00
Chr06	irgsp1_rep	mRNA	8739433	8744022	.	+	.	ID=Os06t0264500-01;Name=Os06t0264500-01;Locus_id=Os06g0264500;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=TGF-beta receptor%2C type I/II extracellular region family protein.;Transcript_evidence=AK120596 (DDBJ%2C Best hit);ORF_evidence=E4MVN6 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),PTR2 family proton/oligopeptide symporter%2C conserved site (IPR018456);NIAS_FLcDNA=J013148A07;Oryzabase=23669;Expression=AK120596;TENOR=Os06t0264500-01;KEGG=Os06t0264500-01
Chr06	irgsp1_rep	five_prime_UTR	8739433	8739442	.	+	.	Parent=Os06t0264500-01
Chr06	irgsp1_rep	CDS	8739443	8739518	.	+	0	Parent=Os06t0264500-01
Chr06	irgsp1_rep	CDS	8739615	8739832	.	+	2	Parent=Os06t0264500-01
Chr06	irgsp1_rep	CDS	8739923	8740494	.	+	0	Parent=Os06t0264500-01
Chr06	irgsp1_rep	CDS	8742902	8743829	.	+	1	Parent=Os06t0264500-01
Chr06	irgsp1_rep	three_prime_UTR	8743830	8744022	.	+	.	Parent=Os06t0264500-01
Chr06	irgsp1_rep	mRNA	8744339	8744814	.	+	.	ID=Os06t0264650-00;Name=Os06t0264650-00;Locus_id=Os06g0264650;Note=Hypothetical conserved gene.;Transcript_evidence=EU971115 (DDBJ);ORF_evidence=B6TZM1 (UniProt);TENOR=Os06t0264650-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	8744339	8744379	.	+	.	Parent=Os06t0264650-00
Chr06	irgsp1_rep	CDS	8744380	8744814	.	+	0	Parent=Os06t0264650-00
Chr06	irgsp1_rep	mRNA	8745258	8745991	.	-	.	ID=Os06t0264700-01;Name=Os06t0264700-01;Locus_id=Os06g0264700;Note=Acylphosphatase domain containing protein.;Transcript_evidence=AK243118 (DDBJ%2C Best hit);ORF_evidence=A3BAG9 (UniProt);GO=Molecular Function: acylphosphatase activity (GO:0003998);InterPro=Acylphosphatase-like (IPR001792),Acylphosphatase%2C conserved site (IPR017968),Acylphosphatase (IPR020456);NIAS_FLcDNA=J100028B14;TENOR=Os06t0264700-01;KEGG=Os06t0264700-01 (EC:3.6.1.7)
Chr06	irgsp1_rep	five_prime_UTR	8745959	8745991	.	-	.	Parent=Os06t0264700-01
Chr06	irgsp1_rep	CDS	8745569	8745958	.	-	0	Parent=Os06t0264700-01
Chr06	irgsp1_rep	three_prime_UTR	8745258	8745568	.	-	.	Parent=Os06t0264700-01
Chr06	irgsp1_rep	mRNA	8745503	8746084	.	+	.	ID=Os06t0264750-00;Name=Os06t0264750-00;Locus_id=Os06g0264750;Note=Conserved hypothetical protein.;Transcript_evidence=EU971115 (DDBJ);ORF_evidence=B6U1K0 (UniProt);TENOR=Os06t0264750-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	8745503	8746084	.	+	0	Parent=Os06t0264750-00
Chr06	irgsp1_rep	mRNA	8751332	8752603	.	-	.	ID=Os06t0264800-01;Name=Os06t0264800-01;Locus_id=Os06g0264800;Note=Similar to Threonine endopeptidase.;Transcript_evidence=AK060455 (DDBJ%2C Best hit),AK066637 (DDBJ%2C Best hit),AK099532 (DDBJ%2C Best hit),AK105959 (DDBJ%2C Best hit);ORF_evidence=B6TCN7 (UniProt);NIAS_FLcDNA=001-012-A05,J013071I08,J013031L04,001-205-D11;Expression=AK060455;TENOR=Os06t0264800-01;KEGG=Os06t0264800-01
Chr06	irgsp1_rep	five_prime_UTR	8752497	8752603	.	-	.	Parent=Os06t0264800-01
Chr06	irgsp1_rep	CDS	8752272	8752496	.	-	0	Parent=Os06t0264800-01
Chr06	irgsp1_rep	CDS	8752085	8752192	.	-	0	Parent=Os06t0264800-01
Chr06	irgsp1_rep	CDS	8751926	8751997	.	-	0	Parent=Os06t0264800-01
Chr06	irgsp1_rep	CDS	8751653	8751718	.	-	0	Parent=Os06t0264800-01
Chr06	irgsp1_rep	three_prime_UTR	8751332	8751652	.	-	.	Parent=Os06t0264800-01
Chr06	irgsp1_rep	mRNA	8751459	8751617	.	-	.	ID=Os06t0264800-04;Name=Os06t0264800-04;Locus_id=Os06g0264800;Note=Non-protein coding transcript.;Transcript_evidence=AK072387 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023078I24;TENOR=Os06t0264800-04
Chr06	irgsp1_rep	exon	8751459	8751617	.	-	.	Parent=Os06t0264800-04
Chr06	irgsp1_rep	mRNA	8753354	8757513	.	-	.	ID=Os06t0264900-00;Name=Os06t0264900-00;Locus_id=Os06g0264900;Note=Endonuclease/exonuclease/phosphatase domain containing protein.;Transcript_evidence=AK354622 (DDBJ);ORF_evidence=F2CSM0 (UniProt);InterPro=Endonuclease/exonuclease/phosphatase (IPR005135);TENOR=Os06t0264900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	8757479	8757513	.	-	.	Parent=Os06t0264900-00
Chr06	irgsp1_rep	CDS	8757211	8757478	.	-	0	Parent=Os06t0264900-00
Chr06	irgsp1_rep	CDS	8756717	8756880	.	-	2	Parent=Os06t0264900-00
Chr06	irgsp1_rep	CDS	8756574	8756639	.	-	0	Parent=Os06t0264900-00
Chr06	irgsp1_rep	CDS	8756444	8756496	.	-	0	Parent=Os06t0264900-00
Chr06	irgsp1_rep	CDS	8756275	8756356	.	-	1	Parent=Os06t0264900-00
Chr06	irgsp1_rep	CDS	8755703	8755783	.	-	0	Parent=Os06t0264900-00
Chr06	irgsp1_rep	CDS	8754840	8754932	.	-	0	Parent=Os06t0264900-00
Chr06	irgsp1_rep	CDS	8754565	8754597	.	-	0	Parent=Os06t0264900-00
Chr06	irgsp1_rep	CDS	8754389	8754461	.	-	0	Parent=Os06t0264900-00
Chr06	irgsp1_rep	CDS	8754296	8754303	.	-	2	Parent=Os06t0264900-00
Chr06	irgsp1_rep	three_prime_UTR	8754192	8754295	.	-	.	Parent=Os06t0264900-00
Chr06	irgsp1_rep	three_prime_UTR	8754027	8754112	.	-	.	Parent=Os06t0264900-00
Chr06	irgsp1_rep	three_prime_UTR	8753836	8753920	.	-	.	Parent=Os06t0264900-00
Chr06	irgsp1_rep	three_prime_UTR	8753354	8753698	.	-	.	Parent=Os06t0264900-00
Chr06	irgsp1_rep	mRNA	8758936	8765680	.	-	.	ID=Os06t0265000-01;Name=Os06t0265000-01;Locus_id=Os06g0265000;RAP-DB Gene Symbol Synonym(s)=ASN%2C OsASN2%2C OsAS%2C OsAS2%2C AS2;RAP-DB Gene Name Synonym(s)=ASPARAGINE SYNTHETASE%2C asparagine synthetase 2%2C Asparagine Synthetase2;CGSNL Gene Symbol=ASN;CGSNL Gene Name=ASPARAGINE SYNTHETASE;Oryzabase Gene Symbol Synonym(s)=OsASN2%2C OsAS%2C OsAS2%2C AS2;Oryzabase Gene Name Synonym(s)=asparagine synthetase 2%2C Asparagine Synthetase2;Note=Asparagine synthetase%2C Long-distance transport of asparagine;Transcript_evidence=AK100247,D83378,U55873;ORF_evidence=Q43011;GO=Biological Process: asparagine biosynthetic process (GO:0006529),Molecular Function: asparagine synthase (glutamine-hydrolyzing) activity (GO:0004066);InterPro=Asparagine synthase%2C glutamine-hydrolyzing (IPR006426),Nucleophile aminohydrolases%2C N-terminal (IPR029055),Glutamine amidotransferase type 2 domain (IPR017932),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Asparagine synthase (IPR001962);NIAS_FLcDNA=J023058E10;Manual Curation=September 4%2C 2015;Literature_PMID=25634963;Oryzabase=9307;Expression=AK100247;TENOR=Os06t0265000-01;KEGG=Os06t0265000-01 (EC:6.3.5.4)
Chr06	irgsp1_rep	five_prime_UTR	8765560	8765680	.	-	.	Parent=Os06t0265000-01
Chr06	irgsp1_rep	CDS	8765480	8765559	.	-	0	Parent=Os06t0265000-01
Chr06	irgsp1_rep	CDS	8764170	8764308	.	-	1	Parent=Os06t0265000-01
Chr06	irgsp1_rep	CDS	8763775	8763870	.	-	0	Parent=Os06t0265000-01
Chr06	irgsp1_rep	CDS	8763516	8763657	.	-	0	Parent=Os06t0265000-01
Chr06	irgsp1_rep	CDS	8761871	8761966	.	-	2	Parent=Os06t0265000-01
Chr06	irgsp1_rep	CDS	8761590	8761686	.	-	2	Parent=Os06t0265000-01
Chr06	irgsp1_rep	CDS	8761137	8761296	.	-	1	Parent=Os06t0265000-01
Chr06	irgsp1_rep	CDS	8760859	8760939	.	-	0	Parent=Os06t0265000-01
Chr06	irgsp1_rep	CDS	8760546	8760767	.	-	0	Parent=Os06t0265000-01
Chr06	irgsp1_rep	CDS	8760226	8760360	.	-	0	Parent=Os06t0265000-01
Chr06	irgsp1_rep	CDS	8760049	8760129	.	-	0	Parent=Os06t0265000-01
Chr06	irgsp1_rep	CDS	8759867	8759953	.	-	0	Parent=Os06t0265000-01
Chr06	irgsp1_rep	CDS	8759637	8759744	.	-	0	Parent=Os06t0265000-01
Chr06	irgsp1_rep	CDS	8759303	8759554	.	-	0	Parent=Os06t0265000-01
Chr06	irgsp1_rep	three_prime_UTR	8758936	8759302	.	-	.	Parent=Os06t0265000-01
Chr06	irgsp1_rep	mRNA	8767393	8767917	.	-	.	ID=Os06t0265100-00;Name=Os06t0265100-00;Locus_id=Os06g0265100;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A3BAH3 (UniProt);InterPro=Protein of unknown function DUF3778 (IPR022256);TENOR=Os06t0265100-00;KEGG=Os06t0265100-00
Chr06	irgsp1_rep	CDS	8767393	8767917	.	-	0	Parent=Os06t0265100-00
Chr06	irgsp1_rep	mRNA	8785882	8788413	.	-	.	ID=Os06t0265400-01;Name=Os06t0265400-01;Locus_id=Os06g0265400;CGSNL Gene Symbol=BZIP47;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 47;Oryzabase Gene Symbol Synonym(s)=OsbZIP47;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 47;Note=Similar to Transcription factor HBP-1b(C38) (Fragment).;Transcript_evidence=AK109719 (DDBJ%2C Best hit);ORF_evidence=E9N3N2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);NIAS_FLcDNA=002-146-A04;Oryzabase=10131;Expression=AK109719;TENOR=Os06t0265400-01;KEGG=Os06t0265400-01
Chr06	irgsp1_rep	five_prime_UTR	8788372	8788413	.	-	.	Parent=Os06t0265400-01
Chr06	irgsp1_rep	five_prime_UTR	8788186	8788274	.	-	.	Parent=Os06t0265400-01
Chr06	irgsp1_rep	five_prime_UTR	8788098	8788121	.	-	.	Parent=Os06t0265400-01
Chr06	irgsp1_rep	CDS	8787900	8788097	.	-	0	Parent=Os06t0265400-01
Chr06	irgsp1_rep	CDS	8787726	8787812	.	-	0	Parent=Os06t0265400-01
Chr06	irgsp1_rep	CDS	8787563	8787622	.	-	0	Parent=Os06t0265400-01
Chr06	irgsp1_rep	CDS	8787265	8787342	.	-	0	Parent=Os06t0265400-01
Chr06	irgsp1_rep	CDS	8787093	8787150	.	-	0	Parent=Os06t0265400-01
Chr06	irgsp1_rep	CDS	8786724	8786995	.	-	2	Parent=Os06t0265400-01
Chr06	irgsp1_rep	CDS	8786368	8786625	.	-	0	Parent=Os06t0265400-01
Chr06	irgsp1_rep	CDS	8786134	8786280	.	-	0	Parent=Os06t0265400-01
Chr06	irgsp1_rep	three_prime_UTR	8785882	8786133	.	-	.	Parent=Os06t0265400-01
Chr06	irgsp1_rep	mRNA	8821915	8822917	.	-	.	ID=Os06t0265650-00;Name=Os06t0265650-00;Locus_id=Os06g0265650;Note=Hypothetical protein.;Transcript_evidence=EU945257 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0265650-00
Chr06	irgsp1_rep	five_prime_UTR	8822823	8822917	.	-	.	Parent=Os06t0265650-00
Chr06	irgsp1_rep	CDS	8821915	8822822	.	-	0	Parent=Os06t0265650-00
Chr06	irgsp1_rep	mRNA	8821962	8823365	.	+	.	ID=Os06t0265900-00;Name=Os06t0265900-00;Locus_id=Os06g0265900;Note=Plant organelle RNA recognition domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001057343.2 (RefSeq);InterPro=Plant organelle RNA recognition domain (IPR021099);TENOR=Os06t0265900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	8821962	8823116	.	+	0	Parent=Os06t0265900-00
Chr06	irgsp1_rep	CDS	8823225	8823365	.	+	0	Parent=Os06t0265900-00
Chr06	irgsp1_rep	mRNA	8824430	8825030	.	-	.	ID=Os06t0265950-01;Name=Os06t0265950-01;Locus_id=Os06g0265950;Note=Non-protein coding transcript.;Transcript_evidence=AK241555 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065178B07;TENOR=Os06t0265950-01
Chr06	irgsp1_rep	exon	8824430	8825030	.	-	.	Parent=Os06t0265950-01
Chr06	irgsp1_rep	mRNA	8825456	8827101	.	+	.	ID=Os06t0266000-01;Name=Os06t0266000-01;Locus_id=Os06g0266000;Oryzabase Gene Symbol Synonym(s)=OsTBL62%2C TBL62;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 62;Note=Conserved hypothetical protein.;Transcript_evidence=AK105495 (DDBJ%2C Best hit);ORF_evidence=B9FSM6 (UniProt);NIAS_FLcDNA=001-127-C06;Oryzabase=21515;TENOR=Os06t0266000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	8825456	8825621	.	+	.	Parent=Os06t0266000-01
Chr06	irgsp1_rep	CDS	8825622	8826017	.	+	0	Parent=Os06t0266000-01
Chr06	irgsp1_rep	three_prime_UTR	8826018	8826627	.	+	.	Parent=Os06t0266000-01
Chr06	irgsp1_rep	three_prime_UTR	8826710	8827101	.	+	.	Parent=Os06t0266000-01
Chr06	irgsp1_rep	mRNA	8833137	8835400	.	+	.	ID=Os06t0266133-00;Name=Os06t0266133-00;Locus_id=Os06g0266133;Oryzabase Gene Symbol Synonym(s)=OsTBL66%2C TBL66;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 66;Note=Hypothetical protein.;Transcript_evidence=AK374889 (DDBJ);ORF_evidence=longestORF;Oryzabase=21519;TENOR=Os06t0266133-00
Chr06	irgsp1_rep	five_prime_UTR	8833137	8833409	.	+	.	Parent=Os06t0266133-00
Chr06	irgsp1_rep	five_prime_UTR	8833703	8834236	.	+	.	Parent=Os06t0266133-00
Chr06	irgsp1_rep	CDS	8834237	8834292	.	+	0	Parent=Os06t0266133-00
Chr06	irgsp1_rep	CDS	8835090	8835375	.	+	1	Parent=Os06t0266133-00
Chr06	irgsp1_rep	three_prime_UTR	8835376	8835400	.	+	.	Parent=Os06t0266133-00
Chr06	irgsp1_rep	mRNA	8834922	8835800	.	-	.	ID=Os06t0266266-00;Name=Os06t0266266-00;Locus_id=Os06g0266266;Note=Similar to cell number regulator 11.;Transcript_evidence=HM008663 (DDBJ);ORF_evidence=NP_001182142.1 (RefSeq);InterPro=Uncharacterised protein family Cys-rich (IPR006461);TENOR=Os06t0266266-00
Chr06	irgsp1_rep	CDS	8835575	8835800	.	-	0	Parent=Os06t0266266-00
Chr06	irgsp1_rep	CDS	8835410	8835481	.	-	2	Parent=Os06t0266266-00
Chr06	irgsp1_rep	CDS	8834922	8835325	.	-	2	Parent=Os06t0266266-00
Chr06	irgsp1_rep	mRNA	8836978	8837922	.	-	.	ID=Os06t0266400-00;Name=Os06t0266400-00;Locus_id=Os06g0266400;CGSNL Gene Symbol=UCL17;CGSNL Gene Name=UCLACYANIN-LIKE PROTEIN 17;Oryzabase Gene Symbol Synonym(s)=OsUCL17;Oryzabase Gene Name Synonym(s)=uclacyanin-like protein 17;Note=Similar to chemocyanin.;Transcript_evidence=EU966006 (DDBJ);ORF_evidence=B6T2E5 (UniProt);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Blue (type 1) copper domain (IPR000923),Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);Oryzabase=9766;TENOR=Os06t0266400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	8837908	8837922	.	-	.	Parent=Os06t0266400-00
Chr06	irgsp1_rep	CDS	8837694	8837907	.	-	0	Parent=Os06t0266400-00
Chr06	irgsp1_rep	CDS	8836978	8837216	.	-	2	Parent=Os06t0266400-00
Chr06	irgsp1_rep	mRNA	8848297	8848729	.	-	.	ID=Os06t0266800-01;Name=Os06t0266800-01;Locus_id=Os06g0266800;CGSNL Gene Symbol=GW6;CGSNL Gene Name=GRAIN WIDTH 6;Oryzabase Gene Symbol Synonym(s)=OsGSR1%2C GSR1%2C OsGASR7%2C GASR7%2C OsGW6%2C OsGASR7/GW6;Oryzabase Gene Name Synonym(s)=GAST family gene in rice 1%2C GA-stimulated transcript family gene in rice 1%2C gibberellic acid- stimulated regulator 7;Note=Similar to Gibberellin-stimulated protein.;Transcript_evidence=AK062516 (DDBJ%2C Best hit);ORF_evidence=Q53AN3 (UniProt);InterPro=Gibberellin regulated protein (IPR003854);NIAS_FLcDNA=001-104-C07;Oryzabase=14270;TENOR=Os06t0266800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	8848628	8848729	.	-	.	Parent=Os06t0266800-01
Chr06	irgsp1_rep	CDS	8848373	8848627	.	-	0	Parent=Os06t0266800-01
Chr06	irgsp1_rep	three_prime_UTR	8848297	8848372	.	-	.	Parent=Os06t0266800-01
Chr06	irgsp1_rep	mRNA	8848154	8848833	.	-	.	ID=Os06t0266800-02;Name=Os06t0266800-02;Locus_id=Os06g0266800;RAP-DB Gene Symbol Synonym(s)=OsGSR1%2C GW6%2C OsGASR7;RAP-DB Gene Name Synonym(s)=GA-stimulated transcript (GAST) family gene in rice 1%2C GRAIN WIDTH 6%2C gibberellic acid-stimulated regulator 7;Oryzabase Gene Symbol Synonym(s)=OsGSR1%2C GASR7;Oryzabase Gene Name Synonym(s)=GAST family gene in rice 1%2C GA-stimulated transcript family gene in rice 1;Note=GAST gene family protein%2C Coordinator in  crosstalk between GA and BR signaling%2C Regulation of grain width and weight%2C Regulation of grain length;Transcript_evidence=AY604180 (Genbank);ORF_evidence=Q53AN3 (UniProt);InterPro=Gibberellin regulated protein (IPR003854);Manual Curation=June 23%2C 2020;Literature_PMID=32569443,32365409,18980660;Oryzabase=14270;Subcellular location=cytoplasm (GO:0005737), nucleus (GO:0005634)
Chr06	irgsp1_rep	five_prime_UTR	8848810	8848833	.	-	.	Parent=Os06t0266800-02
Chr06	irgsp1_rep	CDS	8848738	8848809	.	-	0	Parent=Os06t0266800-02
Chr06	irgsp1_rep	CDS	8848373	8848633	.	-	0	Parent=Os06t0266800-02
Chr06	irgsp1_rep	three_prime_UTR	8848154	8848372	.	-	.	Parent=Os06t0266800-02
Chr06	irgsp1_rep	mRNA	8868033	8869886	.	-	.	ID=Os06t0267200-01;Name=Os06t0267200-01;Locus_id=Os06g0267200;Note=Conserved hypothetical protein.;Transcript_evidence=AK103070 (DDBJ%2C Best hit);ORF_evidence=B9FSM8 (UniProt);NIAS_FLcDNA=J033118B04;TENOR=Os06t0267200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	8869528	8869886	.	-	0	Parent=Os06t0267200-01
Chr06	irgsp1_rep	CDS	8869407	8869446	.	-	1	Parent=Os06t0267200-01
Chr06	irgsp1_rep	three_prime_UTR	8869371	8869406	.	-	.	Parent=Os06t0267200-01
Chr06	irgsp1_rep	three_prime_UTR	8868033	8869026	.	-	.	Parent=Os06t0267200-01
Chr06	irgsp1_rep	mRNA	8876051	8877757	.	-	.	ID=Os06t0267400-00;Name=Os06t0267400-00;Locus_id=Os06g0267400;Note=Similar to CytoChrome P450.;Transcript_evidence=AK376170 (DDBJ);ORF_evidence=A5LFV4 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os06t0267400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	8877077	8877757	.	-	0	Parent=Os06t0267400-00
Chr06	irgsp1_rep	CDS	8876051	8876632	.	-	0	Parent=Os06t0267400-00
Chr06	irgsp1_rep	mRNA	8876169	8877746	.	+	.	ID=Os06t0267450-00;Name=Os06t0267450-00;Locus_id=Os06g0267450;Note=Hypothetical protein.;Transcript_evidence=tplb0033d13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0267450-00
Chr06	irgsp1_rep	five_prime_UTR	8876169	8876628	.	+	.	Parent=Os06t0267450-00
Chr06	irgsp1_rep	CDS	8876629	8876736	.	+	0	Parent=Os06t0267450-00
Chr06	irgsp1_rep	CDS	8876852	8877746	.	+	0	Parent=Os06t0267450-00
Chr06	irgsp1_rep	mRNA	8882614	8884817	.	+	.	ID=Os06t0267500-01;Name=Os06t0267500-01;Locus_id=Os06g0267500;CGSNL Gene Symbol=NAC91;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 91;Oryzabase Gene Symbol Synonym(s)=ONAC091%2C ONAC91;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 091%2C NAC domain-containing protein 91;Note=Similar to NAM1 protein (Fragment).;Transcript_evidence=AK060434 (DDBJ%2C Best hit);ORF_evidence=Q70KS1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=001-011-B08;Oryzabase=15857;Expression=AK060434;TENOR=Os06t0267500-01;KEGG=Os06t0267500-01
Chr06	irgsp1_rep	five_prime_UTR	8882614	8882673	.	+	.	Parent=Os06t0267500-01
Chr06	irgsp1_rep	five_prime_UTR	8883127	8883305	.	+	.	Parent=Os06t0267500-01
Chr06	irgsp1_rep	CDS	8883306	8883608	.	+	0	Parent=Os06t0267500-01
Chr06	irgsp1_rep	CDS	8883778	8884158	.	+	0	Parent=Os06t0267500-01
Chr06	irgsp1_rep	CDS	8884239	8884295	.	+	0	Parent=Os06t0267500-01
Chr06	irgsp1_rep	three_prime_UTR	8884296	8884817	.	+	.	Parent=Os06t0267500-01
Chr06	irgsp1_rep	mRNA	8897948	8903210	.	+	.	ID=Os06t0267600-01;Name=Os06t0267600-01;Locus_id=Os06g0267600;Oryzabase Gene Name Synonym(s)=Autophagy-related%3B C-terminal domain-containing protein;Note=Autophagy-related%2C C-terminal domain containing protein.;Transcript_evidence=AK106597 (DDBJ%2C Best hit);ORF_evidence=B8B0D6 (UniProt);InterPro=Autophagy-related%2C C-terminal (IPR015412);NIAS_FLcDNA=002-112-A10;Oryzabase=21959;TENOR=Os06t0267600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	8897948	8897949	.	+	.	Parent=Os06t0267600-01
Chr06	irgsp1_rep	CDS	8897950	8897982	.	+	0	Parent=Os06t0267600-01
Chr06	irgsp1_rep	CDS	8898072	8898184	.	+	0	Parent=Os06t0267600-01
Chr06	irgsp1_rep	CDS	8899158	8899347	.	+	1	Parent=Os06t0267600-01
Chr06	irgsp1_rep	CDS	8899582	8899695	.	+	0	Parent=Os06t0267600-01
Chr06	irgsp1_rep	CDS	8899774	8899881	.	+	0	Parent=Os06t0267600-01
Chr06	irgsp1_rep	CDS	8900124	8900256	.	+	0	Parent=Os06t0267600-01
Chr06	irgsp1_rep	CDS	8900389	8900591	.	+	2	Parent=Os06t0267600-01
Chr06	irgsp1_rep	CDS	8900809	8901005	.	+	0	Parent=Os06t0267600-01
Chr06	irgsp1_rep	CDS	8902610	8902670	.	+	1	Parent=Os06t0267600-01
Chr06	irgsp1_rep	three_prime_UTR	8902671	8903210	.	+	.	Parent=Os06t0267600-01
Chr06	irgsp1_rep	mRNA	8913931	8917864	.	-	.	ID=Os06t0267900-01;Name=Os06t0267900-01;Locus_id=Os06g0267900;Note=NB-ARC domain containing protein.;Transcript_evidence=AK120133 (DDBJ%2C Best hit);ORF_evidence=A2YBJ0 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013027B11;Expression=AK120133;TENOR=Os06t0267900-01;KEGG=Os06t0267900-01
Chr06	irgsp1_rep	five_prime_UTR	8917863	8917864	.	-	.	Parent=Os06t0267900-01
Chr06	irgsp1_rep	CDS	8916963	8917862	.	-	0	Parent=Os06t0267900-01
Chr06	irgsp1_rep	three_prime_UTR	8914437	8916962	.	-	.	Parent=Os06t0267900-01
Chr06	irgsp1_rep	three_prime_UTR	8913931	8914328	.	-	.	Parent=Os06t0267900-01
Chr06	irgsp1_rep	mRNA	8918244	8918582	.	-	.	ID=Os06t0268050-00;Name=Os06t0268050-00;Locus_id=Os06g0268050;Note=Similar to OSIGBa0139J17.1 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01LS3 (UniProt);TENOR=Os06t0268050-00
Chr06	irgsp1_rep	CDS	8918244	8918582	.	-	0	Parent=Os06t0268050-00
Chr06	irgsp1_rep	mRNA	8935774	8939018	.	-	.	ID=Os06t0268500-00;Name=Os06t0268500-00;Locus_id=Os06g0268500;Note=Similar to OSIGBa0139J17.1 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01LS3 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os06t0268500-00
Chr06	irgsp1_rep	CDS	8936916	8939018	.	-	0	Parent=Os06t0268500-00
Chr06	irgsp1_rep	CDS	8935774	8936745	.	-	0	Parent=Os06t0268500-00
Chr06	irgsp1_rep	mRNA	8939510	8941619	.	+	.	ID=Os06t0268600-01;Name=Os06t0268600-01;Locus_id=Os06g0268600;Note=Non-protein coding transcript.;Transcript_evidence=AK109608 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-137-F10;TENOR=Os06t0268600-01
Chr06	irgsp1_rep	exon	8939510	8941619	.	+	.	Parent=Os06t0268600-01
Chr06	irgsp1_rep	mRNA	8955691	8959653	.	+	.	ID=Os06t0268700-01;Name=Os06t0268700-01;Locus_id=Os06g0268700;Note=Peptidase A1 domain containing protein.;Transcript_evidence=AK120783 (DDBJ%2C Best hit);ORF_evidence=A2YBJ3 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J023010D09;Expression=AK120783;TENOR=Os06t0268700-01;KEGG=Os06t0268700-01
Chr06	irgsp1_rep	five_prime_UTR	8955691	8955766	.	+	.	Parent=Os06t0268700-01
Chr06	irgsp1_rep	CDS	8955767	8956236	.	+	0	Parent=Os06t0268700-01
Chr06	irgsp1_rep	CDS	8956920	8957037	.	+	1	Parent=Os06t0268700-01
Chr06	irgsp1_rep	CDS	8957213	8957436	.	+	0	Parent=Os06t0268700-01
Chr06	irgsp1_rep	CDS	8957535	8957771	.	+	1	Parent=Os06t0268700-01
Chr06	irgsp1_rep	CDS	8958305	8958458	.	+	1	Parent=Os06t0268700-01
Chr06	irgsp1_rep	CDS	8958539	8958621	.	+	0	Parent=Os06t0268700-01
Chr06	irgsp1_rep	CDS	8958756	8958870	.	+	1	Parent=Os06t0268700-01
Chr06	irgsp1_rep	CDS	8959020	8959092	.	+	0	Parent=Os06t0268700-01
Chr06	irgsp1_rep	CDS	8959188	8959330	.	+	2	Parent=Os06t0268700-01
Chr06	irgsp1_rep	three_prime_UTR	8959331	8959653	.	+	.	Parent=Os06t0268700-01
Chr06	irgsp1_rep	mRNA	8955979	8959725	.	-	.	ID=Os06t0268750-00;Name=Os06t0268750-00;Locus_id=Os06g0268750;Note=Hypothetical protein.;Transcript_evidence=tplb0046c10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0268750-00
Chr06	irgsp1_rep	five_prime_UTR	8959141	8959725	.	-	.	Parent=Os06t0268750-00
Chr06	irgsp1_rep	five_prime_UTR	8958754	8958888	.	-	.	Parent=Os06t0268750-00
Chr06	irgsp1_rep	five_prime_UTR	8958537	8958619	.	-	.	Parent=Os06t0268750-00
Chr06	irgsp1_rep	five_prime_UTR	8958320	8958453	.	-	.	Parent=Os06t0268750-00
Chr06	irgsp1_rep	five_prime_UTR	8957526	8957783	.	-	.	Parent=Os06t0268750-00
Chr06	irgsp1_rep	five_prime_UTR	8957222	8957424	.	-	.	Parent=Os06t0268750-00
Chr06	irgsp1_rep	CDS	8957203	8957221	.	-	0	Parent=Os06t0268750-00
Chr06	irgsp1_rep	CDS	8956917	8957027	.	-	2	Parent=Os06t0268750-00
Chr06	irgsp1_rep	CDS	8955979	8956164	.	-	2	Parent=Os06t0268750-00
Chr06	irgsp1_rep	mRNA	8960007	8964614	.	-	.	ID=Os06t0268800-01;Name=Os06t0268800-01;Locus_id=Os06g0268800;CGSNL Gene Symbol=ALMT6;CGSNL Gene Name=ALUMINUM-ACTIVATED MALATE TRANSPORTER 6;Oryzabase Gene Symbol Synonym(s)=OsALMT6;Oryzabase Gene Name Synonym(s)=Aluminum-activated malate transporter 6;Note=Uncharacterised protein family UPF0005 domain containing protein.;Transcript_evidence=AK120796 (DDBJ%2C Best hit);ORF_evidence=B8B0D8 (UniProt);GO=Biological Process: response to aluminum ion (GO:0010044);InterPro=Malate transporter%2C aliminium toerance (IPR020966);NIAS_FLcDNA=J023012D20;Oryzabase=22155;Expression=AK120796;TENOR=Os06t0268800-01;KEGG=Os06t0268800-01
Chr06	irgsp1_rep	five_prime_UTR	8964578	8964614	.	-	.	Parent=Os06t0268800-01
Chr06	irgsp1_rep	CDS	8964148	8964577	.	-	0	Parent=Os06t0268800-01
Chr06	irgsp1_rep	CDS	8961914	8962051	.	-	2	Parent=Os06t0268800-01
Chr06	irgsp1_rep	CDS	8961526	8961795	.	-	2	Parent=Os06t0268800-01
Chr06	irgsp1_rep	CDS	8961165	8961301	.	-	2	Parent=Os06t0268800-01
Chr06	irgsp1_rep	CDS	8960939	8961085	.	-	0	Parent=Os06t0268800-01
Chr06	irgsp1_rep	CDS	8960796	8960840	.	-	0	Parent=Os06t0268800-01
Chr06	irgsp1_rep	three_prime_UTR	8960007	8960795	.	-	.	Parent=Os06t0268800-01
Chr06	irgsp1_rep	mRNA	8960029	8961603	.	-	.	ID=Os06t0268800-02;Name=Os06t0268800-02;Locus_id=Os06g0268800;CGSNL Gene Symbol=ALMT6;CGSNL Gene Name=ALUMINUM-ACTIVATED MALATE TRANSPORTER 6;Oryzabase Gene Symbol Synonym(s)=OsALMT6;Oryzabase Gene Name Synonym(s)=Aluminum-activated malate transporter 6;Note=Similar to predicted protein.;Transcript_evidence=AK059623 (DDBJ%2C Best hit);ORF_evidence=E4MWQ0 (UniProt);GO=Biological Process: response to aluminum ion (GO:0010044);InterPro=Malate transporter%2C aliminium toerance (IPR020966);NIAS_FLcDNA=001-030-H05;Oryzabase=22155;Expression=AK059623;TENOR=Os06t0268800-02;KEGG=Os06t0268800-02
Chr06	irgsp1_rep	five_prime_UTR	8961526	8961603	.	-	.	Parent=Os06t0268800-02
Chr06	irgsp1_rep	five_prime_UTR	8961327	8961340	.	-	.	Parent=Os06t0268800-02
Chr06	irgsp1_rep	CDS	8961165	8961326	.	-	0	Parent=Os06t0268800-02
Chr06	irgsp1_rep	CDS	8960939	8961085	.	-	0	Parent=Os06t0268800-02
Chr06	irgsp1_rep	CDS	8960179	8960850	.	-	0	Parent=Os06t0268800-02
Chr06	irgsp1_rep	three_prime_UTR	8960029	8960178	.	-	.	Parent=Os06t0268800-02
Chr06	irgsp1_rep	mRNA	8965743	8966247	.	-	.	ID=Os06t0268900-01;Name=Os06t0268900-01;Locus_id=Os06g0268900;Note=Non-protein coding transcript.;Transcript_evidence=AK062602 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-103-G02;TENOR=Os06t0268900-01
Chr06	irgsp1_rep	exon	8965743	8966247	.	-	.	Parent=Os06t0268900-01
Chr06	irgsp1_rep	mRNA	8970113	8971245	.	-	.	ID=Os06t0269100-00;Name=Os06t0269100-00;Locus_id=Os06g0269100;Note=Hypothetical conserved gene.;Transcript_evidence=BT062221 (DDBJ);ORF_evidence=Q10R97 (UniProt);TENOR=Os06t0269100-00;KEGG=Os06t0269100-00
Chr06	irgsp1_rep	CDS	8970655	8971245	.	-	0	Parent=Os06t0269100-00
Chr06	irgsp1_rep	three_prime_UTR	8970523	8970654	.	-	.	Parent=Os06t0269100-00
Chr06	irgsp1_rep	three_prime_UTR	8970113	8970429	.	-	.	Parent=Os06t0269100-00
Chr06	irgsp1_rep	mRNA	8973320	8974045	.	-	.	ID=Os06t0269151-00;Name=Os06t0269151-00;Locus_id=Os06g0269151;Note=Conserved hypothetical protein.;Transcript_evidence=EU966315 (DDBJ);ORF_evidence=Q5Z6M1 (UniProt);TENOR=Os06t0269151-00
Chr06	irgsp1_rep	five_prime_UTR	8973986	8974045	.	-	.	Parent=Os06t0269151-00
Chr06	irgsp1_rep	CDS	8973320	8973985	.	-	0	Parent=Os06t0269151-00
Chr06	irgsp1_rep	mRNA	8975213	8976733	.	+	.	ID=Os06t0269200-01;Name=Os06t0269200-01;Locus_id=Os06g0269200;Note=Protein of unknown function DUF6%2C transmembrane domain containing protein.;Transcript_evidence=AK058415 (DDBJ%2C Best hit);ORF_evidence=Q10E65 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=001-015-D02;Expression=AK058415;TENOR=Os06t0269200-01;KEGG=Os06t0269200-01
Chr06	irgsp1_rep	five_prime_UTR	8975213	8975262	.	+	.	Parent=Os06t0269200-01
Chr06	irgsp1_rep	CDS	8975263	8975352	.	+	0	Parent=Os06t0269200-01
Chr06	irgsp1_rep	CDS	8975441	8975582	.	+	0	Parent=Os06t0269200-01
Chr06	irgsp1_rep	CDS	8975770	8975831	.	+	2	Parent=Os06t0269200-01
Chr06	irgsp1_rep	three_prime_UTR	8975832	8976733	.	+	.	Parent=Os06t0269200-01
Chr06	irgsp1_rep	mRNA	8977349	8981633	.	-	.	ID=Os06t0269300-01;Name=Os06t0269300-01;Locus_id=Os06g0269300;Note=Six-bladed beta-propeller%2C TolB-like domain containing protein.;Transcript_evidence=AK122070 (DDBJ%2C Best hit);ORF_evidence=XP_002888763.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=NHL repeat (IPR001258),Six-bladed beta-propeller%2C TolB-like (IPR011042);NIAS_FLcDNA=J033117I22;Expression=AK122070;TENOR=Os06t0269300-01;KEGG=Os06t0269300-01
Chr06	irgsp1_rep	five_prime_UTR	8981362	8981633	.	-	.	Parent=Os06t0269300-01
Chr06	irgsp1_rep	CDS	8981250	8981361	.	-	0	Parent=Os06t0269300-01
Chr06	irgsp1_rep	CDS	8981069	8981152	.	-	2	Parent=Os06t0269300-01
Chr06	irgsp1_rep	CDS	8980778	8980960	.	-	2	Parent=Os06t0269300-01
Chr06	irgsp1_rep	CDS	8980060	8980230	.	-	2	Parent=Os06t0269300-01
Chr06	irgsp1_rep	CDS	8979013	8979222	.	-	2	Parent=Os06t0269300-01
Chr06	irgsp1_rep	CDS	8978743	8978831	.	-	2	Parent=Os06t0269300-01
Chr06	irgsp1_rep	CDS	8977646	8978350	.	-	0	Parent=Os06t0269300-01
Chr06	irgsp1_rep	three_prime_UTR	8977349	8977645	.	-	.	Parent=Os06t0269300-01
Chr06	irgsp1_rep	mRNA	8977430	8981486	.	-	.	ID=Os06t0269300-02;Name=Os06t0269300-02;Locus_id=Os06g0269300;Note=Six-bladed beta-propeller%2C TolB-like domain containing protein.;Transcript_evidence=AK064807 (DDBJ%2C Best hit);ORF_evidence=XP_002888763.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=NHL repeat (IPR001258),Six-bladed beta-propeller%2C TolB-like (IPR011042);NIAS_FLcDNA=J013000D18;Expression=AK064807;TENOR=Os06t0269300-02;KEGG=Os06t0269300-02
Chr06	irgsp1_rep	five_prime_UTR	8981362	8981486	.	-	.	Parent=Os06t0269300-02
Chr06	irgsp1_rep	CDS	8981250	8981361	.	-	0	Parent=Os06t0269300-02
Chr06	irgsp1_rep	CDS	8981069	8981152	.	-	2	Parent=Os06t0269300-02
Chr06	irgsp1_rep	CDS	8980778	8980960	.	-	2	Parent=Os06t0269300-02
Chr06	irgsp1_rep	CDS	8980060	8980230	.	-	2	Parent=Os06t0269300-02
Chr06	irgsp1_rep	CDS	8979013	8979222	.	-	2	Parent=Os06t0269300-02
Chr06	irgsp1_rep	CDS	8978743	8978831	.	-	2	Parent=Os06t0269300-02
Chr06	irgsp1_rep	CDS	8977646	8978350	.	-	0	Parent=Os06t0269300-02
Chr06	irgsp1_rep	three_prime_UTR	8977430	8977645	.	-	.	Parent=Os06t0269300-02
Chr06	irgsp1_rep	mRNA	8980160	8980955	.	+	.	ID=Os06t0269400-00;Name=Os06t0269400-00;Locus_id=Os06g0269400;Note=Hypothetical protein.;Transcript_evidence=EU957923 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0269400-00
Chr06	irgsp1_rep	five_prime_UTR	8980160	8980160	.	+	.	Parent=Os06t0269400-00
Chr06	irgsp1_rep	CDS	8980161	8980232	.	+	0	Parent=Os06t0269400-00
Chr06	irgsp1_rep	CDS	8980794	8980955	.	+	0	Parent=Os06t0269400-00
Chr06	irgsp1_rep	mRNA	9033862	9037775	.	-	.	ID=Os06t0270200-01;Name=Os06t0270200-01;Locus_id=Os06g0270200;RAP-DB Gene Symbol Synonym(s)=OsHAK24;RAP-DB Gene Name Synonym(s)=High-affinity Potassium(K<sup>+</sup>) Transporter 24%2C Potassium transporter 24;CGSNL Gene Symbol=HAK24;CGSNL Gene Name=HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 24;Oryzabase Gene Symbol Synonym(s)=OsHAK24;Oryzabase Gene Name Synonym(s)=High-affinity Potassium(K+) Transporter 24%2C Potassium transporter 24;Note=Potassium transporter;Transcript_evidence=Inferred from literature;ORF_evidence=Q5Z6K9;GO=Biological Process: potassium ion transmembrane transport (GO:0071805),Molecular Function: potassium ion transmembrane transporter activity (GO:0015079),Cellular Component: membrane (GO:0016020);InterPro=Potassium transporter (IPR003855);Manual Curation=March 10%2C 2020;Literature_PMID=30621596,19302972;Oryzabase=8678;TENOR=Os06t0270200-00
Chr06	irgsp1_rep	CDS	9037737	9037775	.	-	0	Parent=Os06t0270200-01
Chr06	irgsp1_rep	CDS	9037158	9037641	.	-	0	Parent=Os06t0270200-01
Chr06	irgsp1_rep	CDS	9036978	9037031	.	-	2	Parent=Os06t0270200-01
Chr06	irgsp1_rep	CDS	9036571	9036831	.	-	2	Parent=Os06t0270200-01
Chr06	irgsp1_rep	CDS	9036420	9036472	.	-	2	Parent=Os06t0270200-01
Chr06	irgsp1_rep	CDS	9035558	9035681	.	-	0	Parent=Os06t0270200-01
Chr06	irgsp1_rep	CDS	9035203	9035457	.	-	2	Parent=Os06t0270200-01
Chr06	irgsp1_rep	CDS	9034667	9035073	.	-	2	Parent=Os06t0270200-01
Chr06	irgsp1_rep	CDS	9033862	9034503	.	-	0	Parent=Os06t0270200-01
Chr06	irgsp1_rep	mRNA	9091026	9096472	.	+	.	ID=Os06t0270900-01;Name=Os06t0270900-01;Locus_id=Os06g0270900;RAP-DB Gene Symbol Synonym(s)=OsALDH2b%2C OsALDH2B1;RAP-DB Gene Name Synonym(s)=Aldehyde dehydrogenase 2b%2C Aldehyde dehydrogenase 2B1;CGSNL Gene Symbol=ALDH2B1;CGSNL Gene Name=ALDEHYDE DEHYDROGENASE 2B1;Oryzabase Gene Symbol Synonym(s)=OsALDH2B1;Oryzabase Gene Name Synonym(s)=Aldehyde dehydrogenase 2B1;Note=Aldehyde dehydrogenase%2C Regulation of tapetum degeneration%2C Male reproductive development%2C Regulation of the growth-defense trade-off;Transcript_evidence=AK073079,AK099248,AK120296;ORF_evidence=Q9FRX7;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620);InterPro=Aldehyde/histidinol dehydrogenase (IPR016161),Aldehyde dehydrogenase%2C N-terminal (IPR016162),Aldehyde dehydrogenase%2C C-terminal (IPR016163),Aldehyde dehydrogenase domain (IPR015590),Aldehyde dehydrogenase%2C glutamic acid active site (IPR029510),Aldehyde dehydrogenase%2C cysteine active site (IPR016160);NIAS_FLcDNA=J033005P04,J013116E11,J013051L04;Manual Curation=February 7%2C 2020;Literature_PMID=31989154,32024752;Oryzabase=22109;TENOR=Os06t0270900-01;Subcellular location=mitochondrion (GO:0005739)
Chr06	irgsp1_rep	five_prime_UTR	9091026	9091241	.	+	.	Parent=Os06t0270900-01
Chr06	irgsp1_rep	CDS	9091242	9091350	.	+	0	Parent=Os06t0270900-01
Chr06	irgsp1_rep	CDS	9092953	9093090	.	+	2	Parent=Os06t0270900-01
Chr06	irgsp1_rep	CDS	9093308	9093450	.	+	2	Parent=Os06t0270900-01
Chr06	irgsp1_rep	CDS	9093545	9093698	.	+	0	Parent=Os06t0270900-01
Chr06	irgsp1_rep	CDS	9093793	9094022	.	+	2	Parent=Os06t0270900-01
Chr06	irgsp1_rep	CDS	9094565	9094654	.	+	0	Parent=Os06t0270900-01
Chr06	irgsp1_rep	CDS	9094789	9094962	.	+	0	Parent=Os06t0270900-01
Chr06	irgsp1_rep	CDS	9095056	9095193	.	+	0	Parent=Os06t0270900-01
Chr06	irgsp1_rep	CDS	9095395	9095532	.	+	0	Parent=Os06t0270900-01
Chr06	irgsp1_rep	CDS	9095633	9095694	.	+	0	Parent=Os06t0270900-01
Chr06	irgsp1_rep	CDS	9095927	9096200	.	+	1	Parent=Os06t0270900-01
Chr06	irgsp1_rep	three_prime_UTR	9096201	9096472	.	+	.	Parent=Os06t0270900-01
Chr06	irgsp1_rep	mRNA	9094787	9096474	.	+	.	ID=Os06t0270900-02;Name=Os06t0270900-02;Locus_id=Os06g0270900;CGSNL Gene Symbol=ALDH2B1;CGSNL Gene Name=ALDEHYDE DEHYDROGENASE 2B1;Oryzabase Gene Symbol Synonym(s)=OsALDH2B1%2C OsALDH2b%2C ALDH2b;Oryzabase Gene Name Synonym(s)=Aldehyde dehydrogenase 2B1;Note=Similar to Aldehyde dehydrogenase.;Transcript_evidence=AK061794 (DDBJ%2C Best hit);ORF_evidence=Q9LLR2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620);InterPro=Aldehyde dehydrogenase domain (IPR015590),Aldehyde dehydrogenase%2C conserved site (IPR016160),Aldehyde/histidinol dehydrogenase (IPR016161),Aldehyde dehydrogenase%2C N-terminal (IPR016162),Aldehyde dehydrogenase%2C C-terminal (IPR016163);NIAS_FLcDNA=001-039-F11;Oryzabase=22109;Expression=AK061794;TENOR=Os06t0270900-02;KEGG=Os06t0270900-02 (EC:1.2.1.3)
Chr06	irgsp1_rep	five_prime_UTR	9094787	9094788	.	+	.	Parent=Os06t0270900-02
Chr06	irgsp1_rep	CDS	9094789	9094962	.	+	0	Parent=Os06t0270900-02
Chr06	irgsp1_rep	CDS	9095056	9095193	.	+	0	Parent=Os06t0270900-02
Chr06	irgsp1_rep	CDS	9095395	9095532	.	+	0	Parent=Os06t0270900-02
Chr06	irgsp1_rep	CDS	9095633	9095694	.	+	0	Parent=Os06t0270900-02
Chr06	irgsp1_rep	CDS	9095927	9096200	.	+	1	Parent=Os06t0270900-02
Chr06	irgsp1_rep	three_prime_UTR	9096201	9096474	.	+	.	Parent=Os06t0270900-02
Chr06	irgsp1_rep	mRNA	9095373	9096195	.	-	.	ID=Os06t0270925-00;Name=Os06t0270925-00;Locus_id=Os06g0270925;Note=Hypothetical protein.;Transcript_evidence=EU970913 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0270925-00
Chr06	irgsp1_rep	five_prime_UTR	9096195	9096195	.	-	.	Parent=Os06t0270925-00
Chr06	irgsp1_rep	CDS	9095910	9096194	.	-	0	Parent=Os06t0270925-00
Chr06	irgsp1_rep	three_prime_UTR	9095821	9095909	.	-	.	Parent=Os06t0270925-00
Chr06	irgsp1_rep	three_prime_UTR	9095373	9095705	.	-	.	Parent=Os06t0270925-00
Chr06	irgsp1_rep	mRNA	9097130	9098554	.	-	.	ID=Os06t0270950-01;Name=Os06t0270950-01;Locus_id=Os06g0270950;Note=Conserved hypothetical protein.;Transcript_evidence=AK242954 (DDBJ%2C Best hit);ORF_evidence=B8B0M9 (UniProt);NIAS_FLcDNA=J090088P18;TENOR=Os06t0270950-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	9098470	9098554	.	-	.	Parent=Os06t0270950-01
Chr06	irgsp1_rep	CDS	9097753	9098469	.	-	0	Parent=Os06t0270950-01
Chr06	irgsp1_rep	three_prime_UTR	9097130	9097752	.	-	.	Parent=Os06t0270950-01
Chr06	irgsp1_rep	mRNA	9100687	9102101	.	-	.	ID=Os06t0270982-00;Name=Os06t0270982-00;Locus_id=Os06g0270982;Note=Hypothetical protein.;Transcript_evidence=tplb0025g19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0270982-00
Chr06	irgsp1_rep	five_prime_UTR	9101525	9102101	.	-	.	Parent=Os06t0270982-00
Chr06	irgsp1_rep	CDS	9101138	9101524	.	-	0	Parent=Os06t0270982-00
Chr06	irgsp1_rep	three_prime_UTR	9100687	9101137	.	-	.	Parent=Os06t0270982-00
Chr06	irgsp1_rep	mRNA	9101145	9102125	.	+	.	ID=Os06t0271000-00;Name=Os06t0271000-00;Locus_id=Os06g0271000;Note=UDP-glucuronosyl/UDP-glucosyltransferase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001057359.2 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os06t0271000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	9101145	9102125	.	+	0	Parent=Os06t0271000-00
Chr06	irgsp1_rep	mRNA	9114623	9115033	.	-	.	ID=Os06t0271200-00;Name=Os06t0271200-00;Locus_id=Os06g0271200;Note=Conserved hypothetical protein.;Transcript_evidence=EU950897 (DDBJ);ORF_evidence=A2YBK4 (UniProt);TENOR=Os06t0271200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	9114623	9115033	.	-	0	Parent=Os06t0271200-00
Chr06	irgsp1_rep	mRNA	9116877	9124244	.	+	.	ID=Os06t0271300-00;Name=Os06t0271300-00;Locus_id=Os06g0271300;Note=Similar to OSIGBa0140C02.5 protein.;Transcript_evidence=BT064490 (DDBJ);ORF_evidence=Q01N11 (UniProt);GO=Molecular Function: carbon-nitrogen ligase activity%2C with glutamine as amido-N-donor (GO:0016884);InterPro=Amidase (IPR000120),Amidase signature domain (IPR023631);TENOR=Os06t0271300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	9116877	9117473	.	+	0	Parent=Os06t0271300-00
Chr06	irgsp1_rep	CDS	9118722	9118936	.	+	0	Parent=Os06t0271300-00
Chr06	irgsp1_rep	CDS	9120848	9121087	.	+	1	Parent=Os06t0271300-00
Chr06	irgsp1_rep	CDS	9122555	9122753	.	+	1	Parent=Os06t0271300-00
Chr06	irgsp1_rep	CDS	9123849	9124214	.	+	0	Parent=Os06t0271300-00
Chr06	irgsp1_rep	three_prime_UTR	9124215	9124244	.	+	.	Parent=Os06t0271300-00
Chr06	irgsp1_rep	mRNA	9116926	9124196	.	-	.	ID=Os06t0271350-00;Name=Os06t0271350-00;Locus_id=Os06g0271350;Note=Hypothetical gene.;Transcript_evidence=tplb0045c19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0271350-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	9123856	9124196	.	-	.	Parent=Os06t0271350-00
Chr06	irgsp1_rep	five_prime_UTR	9122540	9122760	.	-	.	Parent=Os06t0271350-00
Chr06	irgsp1_rep	five_prime_UTR	9120863	9121070	.	-	.	Parent=Os06t0271350-00
Chr06	irgsp1_rep	five_prime_UTR	9118846	9118950	.	-	.	Parent=Os06t0271350-00
Chr06	irgsp1_rep	CDS	9118698	9118845	.	-	0	Parent=Os06t0271350-00
Chr06	irgsp1_rep	CDS	9117108	9117445	.	-	2	Parent=Os06t0271350-00
Chr06	irgsp1_rep	three_prime_UTR	9116926	9117107	.	-	.	Parent=Os06t0271350-00
Chr06	irgsp1_rep	mRNA	9126670	9128484	.	-	.	ID=Os06t0271400-00;Name=Os06t0271400-00;Locus_id=Os06g0271400;Note=Transposase%2C Ptta/En/Spm%2C plant domain containing protein.;Transcript_evidence=BT061319 (DDBJ);ORF_evidence=Q5VQ47 (UniProt);InterPro=Transposase%2C Ptta/En/Spm%2C plant (IPR004252);TENOR=Os06t0271400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	9128185	9128484	.	-	0	Parent=Os06t0271400-00
Chr06	irgsp1_rep	CDS	9127648	9127860	.	-	0	Parent=Os06t0271400-00
Chr06	irgsp1_rep	CDS	9127472	9127564	.	-	0	Parent=Os06t0271400-00
Chr06	irgsp1_rep	CDS	9127194	9127295	.	-	0	Parent=Os06t0271400-00
Chr06	irgsp1_rep	CDS	9126712	9127101	.	-	0	Parent=Os06t0271400-00
Chr06	irgsp1_rep	three_prime_UTR	9126670	9126711	.	-	.	Parent=Os06t0271400-00
Chr06	irgsp1_rep	mRNA	9131060	9135885	.	-	.	ID=Os06t0271500-01;Name=Os06t0271500-01;Locus_id=Os06g0271500;Note=Transposon%2C En/Spm-like domain containing protein.;Transcript_evidence=AK065764 (DDBJ%2C Best hit);ORF_evidence=Q01MB4 (UniProt);InterPro=Transposon%2C En/Spm-like (IPR004242);NIAS_FLcDNA=J013042D24;Expression=AK065764;TENOR=Os06t0271500-01;KEGG=Os06t0271500-01
Chr06	irgsp1_rep	five_prime_UTR	9135732	9135885	.	-	.	Parent=Os06t0271500-01
Chr06	irgsp1_rep	five_prime_UTR	9134884	9135198	.	-	.	Parent=Os06t0271500-01
Chr06	irgsp1_rep	CDS	9133787	9134789	.	-	0	Parent=Os06t0271500-01
Chr06	irgsp1_rep	CDS	9131367	9131410	.	-	2	Parent=Os06t0271500-01
Chr06	irgsp1_rep	three_prime_UTR	9131060	9131366	.	-	.	Parent=Os06t0271500-01
Chr06	irgsp1_rep	mRNA	9130980	9134120	.	-	.	ID=Os06t0271500-02;Name=Os06t0271500-02;Locus_id=Os06g0271500;Note=Similar to OSIGBa0132O24.3 protein.;Transcript_evidence=AK066385 (DDBJ%2C Best hit);ORF_evidence=Q01MB4 (UniProt);NIAS_FLcDNA=J013067H21;Expression=AK066385;TENOR=Os06t0271500-02;KEGG=Os06t0271500-02
Chr06	irgsp1_rep	five_prime_UTR	9132190	9134120	.	-	.	Parent=Os06t0271500-02
Chr06	irgsp1_rep	CDS	9132097	9132189	.	-	0	Parent=Os06t0271500-02
Chr06	irgsp1_rep	CDS	9131245	9132018	.	-	0	Parent=Os06t0271500-02
Chr06	irgsp1_rep	three_prime_UTR	9130980	9131244	.	-	.	Parent=Os06t0271500-02
Chr06	irgsp1_rep	mRNA	9137420	9137941	.	-	.	ID=Os06t0271600-00;Name=Os06t0271600-00;Locus_id=Os06g0271600;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001057362.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os06t0271600-00;KEGG=Os06t0271600-00
Chr06	irgsp1_rep	CDS	9137420	9137941	.	-	0	Parent=Os06t0271600-00
Chr06	irgsp1_rep	mRNA	9145967	9150846	.	+	.	ID=Os06t0271900-01;Name=Os06t0271900-01;Locus_id=Os06g0271900;Note=Hypothetical protein.;Transcript_evidence=AK069609 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023020B12;Expression=AK069609;TENOR=Os06t0271900-01;KEGG=Os06t0271900-01
Chr06	irgsp1_rep	five_prime_UTR	9145967	9146223	.	+	.	Parent=Os06t0271900-01
Chr06	irgsp1_rep	five_prime_UTR	9146943	9150078	.	+	.	Parent=Os06t0271900-01
Chr06	irgsp1_rep	CDS	9150079	9150357	.	+	0	Parent=Os06t0271900-01
Chr06	irgsp1_rep	three_prime_UTR	9150358	9150846	.	+	.	Parent=Os06t0271900-01
Chr06	irgsp1_rep	mRNA	9193638	9196108	.	-	.	ID=Os06t0272600-01;Name=Os06t0272600-01;Locus_id=Os06g0272600;Note=Non-protein coding transcript.;Transcript_evidence=AK288812 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090072D04;TENOR=Os06t0272600-01
Chr06	irgsp1_rep	exon	9193638	9196108	.	-	.	Parent=Os06t0272600-01
Chr06	irgsp1_rep	mRNA	9196450	9197709	.	-	.	ID=Os06t0272700-00;Name=Os06t0272700-00;Locus_id=Os06g0272700;Oryzabase Gene Symbol Synonym(s)=OsTBL64%2C TBL64;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 64;Note=Protein of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=BT062756 (DDBJ);ORF_evidence=NP_001174707.1 (RefSeq);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);Oryzabase=21517;TENOR=Os06t0272700-00;KEGG=Os06t0272700-00
Chr06	irgsp1_rep	CDS	9196474	9197709	.	-	0	Parent=Os06t0272700-00
Chr06	irgsp1_rep	three_prime_UTR	9196450	9196473	.	-	.	Parent=Os06t0272700-00
Chr06	irgsp1_rep	mRNA	9202965	9208661	.	-	.	ID=Os06t0272800-00;Name=Os06t0272800-00;Locus_id=Os06g0272800;Oryzabase Gene Symbol Synonym(s)=OsTBL65%2C TBL65;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 65;Note=Domain of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=EU964549 (DDBJ);ORF_evidence=NP_001057365.1 (RefSeq);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);Oryzabase=21518;TENOR=Os06t0272800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	9208302	9208661	.	-	0	Parent=Os06t0272800-00
Chr06	irgsp1_rep	CDS	9202968	9204008	.	-	0	Parent=Os06t0272800-00
Chr06	irgsp1_rep	three_prime_UTR	9202965	9202967	.	-	.	Parent=Os06t0272800-00
Chr06	irgsp1_rep	mRNA	9204721	9206507	.	-	.	ID=Os06t0272850-00;Name=Os06t0272850-00;Locus_id=Os06g0272850;Oryzabase Gene Symbol Synonym(s)=OsTBL65%2C TBL65;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 65;Note=Domain of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=CT828123 (DDBJ%2C Best hit);ORF_evidence=NP_001057365.1 (RefSeq);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);Oryzabase=21518;TENOR=Os06t0272850-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	9206391	9206507	.	-	.	Parent=Os06t0272850-00
Chr06	irgsp1_rep	CDS	9206349	9206390	.	-	0	Parent=Os06t0272850-00
Chr06	irgsp1_rep	CDS	9205925	9206215	.	-	0	Parent=Os06t0272850-00
Chr06	irgsp1_rep	CDS	9205231	9205794	.	-	0	Parent=Os06t0272850-00
Chr06	irgsp1_rep	three_prime_UTR	9204721	9205230	.	-	.	Parent=Os06t0272850-00
Chr06	irgsp1_rep	mRNA	9219013	9219858	.	-	.	ID=Os06t0273100-01;Name=Os06t0273100-01;Locus_id=Os06g0273100;Note=Similar to Chitin-binding lectin 1 precursor (PL-I).;Transcript_evidence=AK099422 (DDBJ%2C Best hit);ORF_evidence=Q5VQ34 (UniProt);NIAS_FLcDNA=J013008E23;Expression=AK099422;TENOR=Os06t0273100-01;KEGG=Os06t0273100-01
Chr06	irgsp1_rep	five_prime_UTR	9219520	9219858	.	-	.	Parent=Os06t0273100-01
Chr06	irgsp1_rep	CDS	9219322	9219519	.	-	0	Parent=Os06t0273100-01
Chr06	irgsp1_rep	CDS	9219138	9219248	.	-	0	Parent=Os06t0273100-01
Chr06	irgsp1_rep	three_prime_UTR	9219013	9219137	.	-	.	Parent=Os06t0273100-01
Chr06	irgsp1_rep	mRNA	9221516	9223357	.	+	.	ID=Os06t0273200-00;Name=Os06t0273200-00;Locus_id=Os06g0273200;Oryzabase Gene Symbol Synonym(s)=OsTBL59%2C TBL59;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 59;Note=Protein of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001174709.1 (RefSeq);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);Oryzabase=21513;TENOR=Os06t0273200-00;KEGG=Os06t0273200-00
Chr06	irgsp1_rep	CDS	9221516	9222040	.	+	0	Parent=Os06t0273200-00
Chr06	irgsp1_rep	CDS	9222566	9223357	.	+	0	Parent=Os06t0273200-00
Chr06	irgsp1_rep	mRNA	9229868	9231628	.	-	.	ID=Os06t0273300-01;Name=Os06t0273300-01;Locus_id=Os06g0273300;Note=Conserved hypothetical protein.;Transcript_evidence=AK288461 (DDBJ%2C Best hit);ORF_evidence=Q5VN17 (UniProt);NIAS_FLcDNA=J090035J24;TENOR=Os06t0273300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	9230859	9231628	.	-	.	Parent=Os06t0273300-01
Chr06	irgsp1_rep	CDS	9230391	9230858	.	-	0	Parent=Os06t0273300-01
Chr06	irgsp1_rep	three_prime_UTR	9229868	9230390	.	-	.	Parent=Os06t0273300-01
Chr06	irgsp1_rep	mRNA	9246578	9248087	.	-	.	ID=Os06t0273400-01;Name=Os06t0273400-01;Locus_id=Os06g0273400;Note=Hypothetical protein.;Transcript_evidence=AK108774 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-150-H10;TENOR=Os06t0273400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	9248087	9248087	.	-	.	Parent=Os06t0273400-01
Chr06	irgsp1_rep	CDS	9247361	9248086	.	-	0	Parent=Os06t0273400-01
Chr06	irgsp1_rep	three_prime_UTR	9246578	9247360	.	-	.	Parent=Os06t0273400-01
Chr06	irgsp1_rep	mRNA	9246711	9248372	.	+	.	ID=Os06t0273500-01;Name=Os06t0273500-01;Locus_id=Os06g0273500;Oryzabase Gene Symbol Synonym(s)=OsTBL60%2C TBL60;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 60;Note=Protein of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=AK106309 (DDBJ%2C Best hit);ORF_evidence=B8B0J6 (UniProt);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=002-101-D01;Oryzabase=21521;Expression=AK106309;TENOR=Os06t0273500-01;KEGG=Os06t0273500-01
Chr06	irgsp1_rep	five_prime_UTR	9246711	9246856	.	+	.	Parent=Os06t0273500-01
Chr06	irgsp1_rep	CDS	9246857	9247309	.	+	0	Parent=Os06t0273500-01
Chr06	irgsp1_rep	CDS	9247388	9248155	.	+	0	Parent=Os06t0273500-01
Chr06	irgsp1_rep	three_prime_UTR	9248156	9248372	.	+	.	Parent=Os06t0273500-01
Chr06	irgsp1_rep	mRNA	9253960	9255521	.	+	.	ID=Os06t0273700-01;Name=Os06t0273700-01;Locus_id=Os06g0273700;Oryzabase Gene Symbol Synonym(s)=OsTBL56%2C TBL56;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 56;Note=Protein of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=AK106489 (DDBJ%2C Best hit);ORF_evidence=A2YBL8 (UniProt);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=002-105-A03;Oryzabase=21520;Expression=AK106489;TENOR=Os06t0273700-01;KEGG=Os06t0273700-01
Chr06	irgsp1_rep	five_prime_UTR	9253960	9254048	.	+	.	Parent=Os06t0273700-01
Chr06	irgsp1_rep	CDS	9254049	9255368	.	+	0	Parent=Os06t0273700-01
Chr06	irgsp1_rep	three_prime_UTR	9255369	9255521	.	+	.	Parent=Os06t0273700-01
Chr06	irgsp1_rep	mRNA	9257417	9262240	.	-	.	ID=Os06t0273800-01;Name=Os06t0273800-01;Locus_id=Os06g0273800;Oryzabase Gene Symbol Synonym(s)=OsSigP5%2C SIGP5;Oryzabase Gene Name Synonym(s)=Type I Signal Peptidase 5%2C TYPE I SIGNAL PEPTIDASE 5;Note=Similar to Signal peptidase 18 subunit (Fragment).;Transcript_evidence=AK058911 (DDBJ%2C Best hit);ORF_evidence=B6T545 (UniProt);GO=Biological Process: signal peptide processing (GO:0006465),Cellular Component: membrane (GO:0016020),Molecular Function: peptidase activity (GO:0008233);InterPro=Peptidase S26B%2C eukaryotic signal peptidase (IPR001733),Peptidase S24/S26A/S26B/S26C%2C beta-ribbon domain (IPR011056),Peptidase S24/S26A/S26B/S26C (IPR015927),Peptidase S24/S26A/S26B (IPR019759);NIAS_FLcDNA=001-008-G10;Oryzabase=20046;Expression=AK058911;TENOR=Os06t0273800-01;KEGG=Os06t0273800-01 (EC:3.4.-.-)
Chr06	irgsp1_rep	five_prime_UTR	9262028	9262240	.	-	.	Parent=Os06t0273800-01
Chr06	irgsp1_rep	five_prime_UTR	9261047	9261100	.	-	.	Parent=Os06t0273800-01
Chr06	irgsp1_rep	CDS	9260968	9261046	.	-	0	Parent=Os06t0273800-01
Chr06	irgsp1_rep	CDS	9259129	9259241	.	-	2	Parent=Os06t0273800-01
Chr06	irgsp1_rep	CDS	9258621	9258692	.	-	0	Parent=Os06t0273800-01
Chr06	irgsp1_rep	CDS	9258487	9258522	.	-	0	Parent=Os06t0273800-01
Chr06	irgsp1_rep	CDS	9258345	9258390	.	-	0	Parent=Os06t0273800-01
Chr06	irgsp1_rep	CDS	9258103	9258190	.	-	2	Parent=Os06t0273800-01
Chr06	irgsp1_rep	CDS	9257954	9258011	.	-	1	Parent=Os06t0273800-01
Chr06	irgsp1_rep	CDS	9257690	9257740	.	-	0	Parent=Os06t0273800-01
Chr06	irgsp1_rep	three_prime_UTR	9257417	9257689	.	-	.	Parent=Os06t0273800-01
Chr06	irgsp1_rep	mRNA	9256961	9262217	.	-	.	ID=Os06t0273800-02;Name=Os06t0273800-02;Locus_id=Os06g0273800;Oryzabase Gene Symbol Synonym(s)=OsSigP5%2C SIGP5;Oryzabase Gene Name Synonym(s)=Type I Signal Peptidase 5%2C TYPE I SIGNAL PEPTIDASE 5;Note=Similar to Signal peptidase 18 subunit (Fragment).;Transcript_evidence=AK111407 (DDBJ%2C Best hit),AK102635 (DDBJ%2C Best hit),AK106215 (DDBJ%2C Best hit);ORF_evidence=B6T545 (UniProt);GO=Biological Process: signal peptide processing (GO:0006465),Cellular Component: membrane (GO:0016020),Molecular Function: peptidase activity (GO:0008233);InterPro=Peptidase S26B%2C eukaryotic signal peptidase (IPR001733),Peptidase S24/S26A/S26B/S26C%2C beta-ribbon domain (IPR011056),Peptidase S24/S26A/S26B/S26C (IPR015927),Peptidase S24/S26A/S26B (IPR019759);NIAS_FLcDNA=002-182-E09,J033099N11,001-208-H01;Oryzabase=20046;Expression=AK111407;TENOR=Os06t0273800-02;KEGG=Os06t0273800-02 (EC:3.4.-.-)
Chr06	irgsp1_rep	five_prime_UTR	9262028	9262217	.	-	.	Parent=Os06t0273800-02
Chr06	irgsp1_rep	five_prime_UTR	9261047	9261100	.	-	.	Parent=Os06t0273800-02
Chr06	irgsp1_rep	CDS	9260968	9261046	.	-	0	Parent=Os06t0273800-02
Chr06	irgsp1_rep	CDS	9259129	9259241	.	-	2	Parent=Os06t0273800-02
Chr06	irgsp1_rep	CDS	9258621	9258692	.	-	0	Parent=Os06t0273800-02
Chr06	irgsp1_rep	CDS	9258487	9258522	.	-	0	Parent=Os06t0273800-02
Chr06	irgsp1_rep	CDS	9258345	9258390	.	-	0	Parent=Os06t0273800-02
Chr06	irgsp1_rep	CDS	9258103	9258190	.	-	2	Parent=Os06t0273800-02
Chr06	irgsp1_rep	CDS	9257954	9258011	.	-	1	Parent=Os06t0273800-02
Chr06	irgsp1_rep	CDS	9257690	9257740	.	-	0	Parent=Os06t0273800-02
Chr06	irgsp1_rep	three_prime_UTR	9256961	9257689	.	-	.	Parent=Os06t0273800-02
Chr06	irgsp1_rep	mRNA	9263486	9265322	.	+	.	ID=Os06t0274000-01;Name=Os06t0274000-01;Locus_id=Os06g0274000;RAP-DB Gene Symbol Synonym(s)=OsHSBP2;RAP-DB Gene Name Synonym(s)=HSF-binding protein 2;Oryzabase Gene Symbol Synonym(s)=OsHSBP2;Oryzabase Gene Name Synonym(s)=HSF-binding protein 2;Note=Heat shock factor (HSF) binding protein%2C Regulation of heat shock response and seed development;Transcript_evidence=AK058874;ORF_evidence=Q9FP22;GO=Molecular Function: transcription corepressor activity (GO:0003714);InterPro=Heat shock factor binding 1 (IPR009643);NIAS_FLcDNA=001-006-F08;Manual Curation=February 21%2C 2017;Literature_PMID=22996677;Oryzabase=13448;Expression=AK058874;TENOR=Os06t0274000-01;KEGG=Os06t0274000-01;Subcellular location=cytosol (GO:0005829), nucleus (GO:0005634)
Chr06	irgsp1_rep	five_prime_UTR	9263486	9263600	.	+	.	Parent=Os06t0274000-01
Chr06	irgsp1_rep	CDS	9263601	9263642	.	+	0	Parent=Os06t0274000-01
Chr06	irgsp1_rep	CDS	9264149	9264202	.	+	0	Parent=Os06t0274000-01
Chr06	irgsp1_rep	CDS	9264344	9264367	.	+	0	Parent=Os06t0274000-01
Chr06	irgsp1_rep	CDS	9264450	9264492	.	+	0	Parent=Os06t0274000-01
Chr06	irgsp1_rep	CDS	9264942	9265078	.	+	2	Parent=Os06t0274000-01
Chr06	irgsp1_rep	three_prime_UTR	9265079	9265322	.	+	.	Parent=Os06t0274000-01
Chr06	irgsp1_rep	mRNA	9266839	9271020	.	-	.	ID=Os06t0274100-01;Name=Os06t0274100-01;Locus_id=Os06g0274100;Oryzabase Gene Name Synonym(s)=importin 9;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK242109 (DDBJ%2C Best hit);ORF_evidence=Q5VN12 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989);NIAS_FLcDNA=J075145I24;Oryzabase=16229;TENOR=Os06t0274100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	9269997	9271020	.	-	.	Parent=Os06t0274100-01
Chr06	irgsp1_rep	CDS	9269712	9269996	.	-	0	Parent=Os06t0274100-01
Chr06	irgsp1_rep	three_prime_UTR	9267824	9269711	.	-	.	Parent=Os06t0274100-01
Chr06	irgsp1_rep	three_prime_UTR	9267616	9267747	.	-	.	Parent=Os06t0274100-01
Chr06	irgsp1_rep	three_prime_UTR	9267480	9267533	.	-	.	Parent=Os06t0274100-01
Chr06	irgsp1_rep	three_prime_UTR	9266839	9267392	.	-	.	Parent=Os06t0274100-01
Chr06	irgsp1_rep	mRNA	9283162	9285239	.	+	.	ID=Os06t0274200-01;Name=Os06t0274200-01;Locus_id=Os06g0274200;Oryzabase Gene Symbol Synonym(s)=Nhp2;Oryzabase Gene Name Synonym(s)=Nucleolar protein family A member 2%2C high-mobility group-like protein;Note=Similar to H/ACA ribonucleoprotein complex subunit 2 (H/ACA snoRNP protein NHP2) (High mobility group-like nuclear protein 2).;Transcript_evidence=AK073155 (DDBJ%2C Best hit);ORF_evidence=B4FDH3 (UniProt);GO=Cellular Component: nucleolus (GO:0005730),Molecular Function: RNA binding (GO:0003723);InterPro=H/ACA ribonucleoprotein complex%2C subunit Nhp2%2C eukaryote (IPR002415),Ribosomal protein L7Ae/L30e/S12e/Gadd45 (IPR004038),Ribosomal protein L7Ae/L8/Nhp2 family (IPR018492);NIAS_FLcDNA=J033011J22;Oryzabase=16225;Expression=AK073155;TENOR=Os06t0274200-01;KEGG=Os06t0274200-01
Chr06	irgsp1_rep	five_prime_UTR	9283162	9283261	.	+	.	Parent=Os06t0274200-01
Chr06	irgsp1_rep	CDS	9283262	9283376	.	+	0	Parent=Os06t0274200-01
Chr06	irgsp1_rep	CDS	9283483	9283552	.	+	2	Parent=Os06t0274200-01
Chr06	irgsp1_rep	CDS	9283794	9283899	.	+	1	Parent=Os06t0274200-01
Chr06	irgsp1_rep	CDS	9284848	9285009	.	+	0	Parent=Os06t0274200-01
Chr06	irgsp1_rep	three_prime_UTR	9285010	9285239	.	+	.	Parent=Os06t0274200-01
Chr06	irgsp1_rep	mRNA	9289326	9291317	.	+	.	ID=Os06t0274300-01;Name=Os06t0274300-01;Locus_id=Os06g0274300;Oryzabase Gene Symbol Synonym(s)=SEPK1;Oryzabase Gene Name Synonym(s)=Somatic Embryogenesis Receptor Kinase 1%2C BRASSINOSTEROID INSENSITIVE1-ASSOCIATED RECEPTOR KINASE1;Note=Similar to BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1.;Transcript_evidence=AK242317 (DDBJ%2C Best hit);ORF_evidence=NP_001147975.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J075195L03;Oryzabase=16230;TENOR=Os06t0274300-01;KEGG=Os06t0274300-01
Chr06	irgsp1_rep	five_prime_UTR	9289326	9289326	.	+	.	Parent=Os06t0274300-01
Chr06	irgsp1_rep	CDS	9289327	9289415	.	+	0	Parent=Os06t0274300-01
Chr06	irgsp1_rep	CDS	9289521	9289655	.	+	1	Parent=Os06t0274300-01
Chr06	irgsp1_rep	CDS	9289768	9289839	.	+	1	Parent=Os06t0274300-01
Chr06	irgsp1_rep	CDS	9289966	9290109	.	+	1	Parent=Os06t0274300-01
Chr06	irgsp1_rep	CDS	9290636	9290707	.	+	1	Parent=Os06t0274300-01
Chr06	irgsp1_rep	CDS	9290801	9290860	.	+	1	Parent=Os06t0274300-01
Chr06	irgsp1_rep	CDS	9290965	9291034	.	+	1	Parent=Os06t0274300-01
Chr06	irgsp1_rep	three_prime_UTR	9291035	9291317	.	+	.	Parent=Os06t0274300-01
Chr06	irgsp1_rep	mRNA	9315991	9323826	.	+	.	ID=Os06t0274500-01;Name=Os06t0274500-01;Locus_id=Os06g0274500;Oryzabase Gene Symbol Synonym(s)=OsSERL2%2C SERL2%2C SERK1%2C OsBAK1-7%2C BAK1-7;Oryzabase Gene Name Synonym(s)=SERK-like gene 2%2C Somatic Embryogenesis Protein Kinase 1%2C bri1-associated receptor kinase 1 (BAK1) homologue 7;Note=Similar to SERK1 (Fragment).;Transcript_evidence=AK066417 (DDBJ%2C Best hit);ORF_evidence=NP_001147975.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013067F20;Oryzabase=13025;Expression=AK066417;TENOR=Os06t0274500-01;KEGG=Os06t0274500-01
Chr06	irgsp1_rep	five_prime_UTR	9315991	9316157	.	+	.	Parent=Os06t0274500-01
Chr06	irgsp1_rep	CDS	9316158	9316254	.	+	0	Parent=Os06t0274500-01
Chr06	irgsp1_rep	CDS	9316357	9316489	.	+	2	Parent=Os06t0274500-01
Chr06	irgsp1_rep	CDS	9316591	9316662	.	+	1	Parent=Os06t0274500-01
Chr06	irgsp1_rep	CDS	9316776	9316919	.	+	1	Parent=Os06t0274500-01
Chr06	irgsp1_rep	CDS	9317133	9317204	.	+	1	Parent=Os06t0274500-01
Chr06	irgsp1_rep	CDS	9317402	9317461	.	+	1	Parent=Os06t0274500-01
Chr06	irgsp1_rep	CDS	9317567	9317820	.	+	1	Parent=Os06t0274500-01
Chr06	irgsp1_rep	CDS	9319123	9319464	.	+	2	Parent=Os06t0274500-01
Chr06	irgsp1_rep	CDS	9321184	9321563	.	+	2	Parent=Os06t0274500-01
Chr06	irgsp1_rep	CDS	9323050	9323418	.	+	0	Parent=Os06t0274500-01
Chr06	irgsp1_rep	three_prime_UTR	9323419	9323826	.	+	.	Parent=Os06t0274500-01
Chr06	irgsp1_rep	mRNA	9319211	9321413	.	-	.	ID=Os06t0274550-00;Name=Os06t0274550-00;Locus_id=Os06g0274550;Note=Non-protein coding transcript.;Transcript_evidence=EU951884 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0274550-00
Chr06	irgsp1_rep	exon	9321167	9321413	.	-	.	Parent=Os06t0274550-00
Chr06	irgsp1_rep	exon	9319211	9319457	.	-	.	Parent=Os06t0274550-00
Chr06	irgsp1_rep	mRNA	9319466	9320505	.	+	.	ID=Os06t0274600-01;Name=Os06t0274600-01;Locus_id=Os06g0274600;Note=Non-protein coding transcript.;Transcript_evidence=AK069024 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023003G07;TENOR=Os06t0274600-01
Chr06	irgsp1_rep	exon	9319466	9320505	.	+	.	Parent=Os06t0274600-01
Chr06	irgsp1_rep	mRNA	9326113	9328206	.	-	.	ID=Os06t0274800-01;Name=Os06t0274800-01;Locus_id=Os06g0274800;Oryzabase Gene Symbol Synonym(s)=prx77;Oryzabase Gene Name Synonym(s)=class III peroxidase 77;Note=Similar to Peroxidase 11 precursor (EC 1.11.1.7) (Atperox P11) (ATP23a/ATP23b).;Transcript_evidence=AK060295 (DDBJ%2C Best hit);ORF_evidence=Q96519 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=001-006-E04;Oryzabase=14600;Expression=AK060295;TENOR=Os06t0274800-01;KEGG=Os06t0274800-01 (EC:1.11.1.7)
Chr06	irgsp1_rep	five_prime_UTR	9328155	9328206	.	-	.	Parent=Os06t0274800-01
Chr06	irgsp1_rep	CDS	9327921	9328154	.	-	0	Parent=Os06t0274800-01
Chr06	irgsp1_rep	CDS	9327603	9327794	.	-	0	Parent=Os06t0274800-01
Chr06	irgsp1_rep	CDS	9327079	9327244	.	-	0	Parent=Os06t0274800-01
Chr06	irgsp1_rep	CDS	9326254	9326666	.	-	2	Parent=Os06t0274800-01
Chr06	irgsp1_rep	three_prime_UTR	9326113	9326253	.	-	.	Parent=Os06t0274800-01
Chr06	irgsp1_rep	mRNA	9326259	9326667	.	+	.	ID=Os06t0274875-00;Name=Os06t0274875-00;Locus_id=Os06g0274875;Note=Hypothetical protein.;Transcript_evidence=EU942261 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0274875-00
Chr06	irgsp1_rep	five_prime_UTR	9326259	9326259	.	+	.	Parent=Os06t0274875-00
Chr06	irgsp1_rep	CDS	9326260	9326667	.	+	0	Parent=Os06t0274875-00
Chr06	irgsp1_rep	mRNA	9336359	9338634	.	-	.	ID=Os06t0274950-01;Name=Os06t0274950-01;Locus_id=Os06g0274950;Note=Hypothetical gene.;Transcript_evidence=AK241018 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065054F21;TENOR=Os06t0274950-01;KEGG=Os06t0274950-01
Chr06	irgsp1_rep	five_prime_UTR	9338000	9338634	.	-	.	Parent=Os06t0274950-01
Chr06	irgsp1_rep	five_prime_UTR	9337165	9337362	.	-	.	Parent=Os06t0274950-01
Chr06	irgsp1_rep	CDS	9336373	9337164	.	-	0	Parent=Os06t0274950-01
Chr06	irgsp1_rep	three_prime_UTR	9336359	9336372	.	-	.	Parent=Os06t0274950-01
Chr06	irgsp1_rep	mRNA	9336376	9338569	.	+	.	ID=Os06t0275000-01;Name=Os06t0275000-01;Locus_id=Os06g0275000;RAP-DB Gene Symbol Synonym(s)=SE1%2C Se1(Lm%2CLf%2CRs%2CFl)%2C se(t)%2C Hd1%2C HD1%2C Fl%2C Lm%2C Se1%2C K%2C Rs%2C Lf%2C Se-1%2C Hd1(t)%2C qHD1(t)%2C OsA%2C OsBBX18%2C Hd1/OsA%2C OsCCT21;RAP-DB Gene Name Synonym(s)=PHOTOSENSITIVITY 1%2C Photosensitivity1%2C Photosensitivity 1%2C Photoperiod sensitivity 1%2C Heading date%2C Photoperiod-sensitivity-1%2C HEADING DATE 1%2C Arabidopsis CONSTANS(CO) gene ortholog%2C ortholog of Arabidopsis CONSTANS%2C B-box-containing protein 18%2C CCT domain-containing gene 21%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 21%2C CCT domain protein 21;CGSNL Gene Symbol=SE1;CGSNL Gene Name=PHOTOSENSITIVITY 1;Oryzabase Gene Symbol Synonym(s)=Se1(Lm%2CLf%2CRs%2CFl)%2C se(t)%2C Hd1%2C HD1%2C Fl%2C Lm%2C Se1%2C K%2C Rs%2C Lf%2C Se-1%2C Hd1(t)%2C qHD1(t)%2C OsA%2C OsBBX18%2C BBX18%2C Hd1/OsA%2C OsCCT21%2C CCT21;Oryzabase Gene Name Synonym(s)=Photosensitivity1%2C Photosensitivity 1%2C Photoperiod sensitivity 1%2C Heading date%2C Photoperiod-sensitivity-1%2C HEADING DATE 1%2C Arabidopsis CONSTANS(CO) gene ortholog%2C ortholog of Arabidopsis CONSTANS%2C B-box-containing protein 18%2C CCT domain-containing gene 21%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 21%2C CCT domain protein 21;Note=Zinc finger protein%2C Heading date;Transcript_evidence=AB041838 (Genbank);ORF_evidence=Q9FDX8 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C B-box (IPR000315),CCT domain (IPR010402);Manual Curation=May 8%2C 2009;Literature_PMID=11148291;Oryzabase=760;Expression=AB041838;TENOR=Os06t0275000-01;KEGG=Os06t0275000-01
Chr06	irgsp1_rep	five_prime_UTR	9336376	9336534	.	+	.	Parent=Os06t0275000-01
Chr06	irgsp1_rep	CDS	9336535	9337362	.	+	0	Parent=Os06t0275000-01
Chr06	irgsp1_rep	CDS	9338000	9338359	.	+	0	Parent=Os06t0275000-01
Chr06	irgsp1_rep	three_prime_UTR	9338360	9338569	.	+	.	Parent=Os06t0275000-01
Chr06	irgsp1_rep	mRNA	9353713	9362032	.	+	.	ID=Os06t0275500-01;Name=Os06t0275500-01;Locus_id=Os06g0275500;RAP-DB Gene Symbol Synonym(s)=CLF%2C OsSET24%2C SDG711%2C EZ1%2C OsCLF;RAP-DB Gene Name Synonym(s)=CURLY LEAF%2C SET DOMAIN GROUP 711%2C SET protein 24%2C polycomb protein EZ1;CGSNL Gene Symbol=CLF;CGSNL Gene Name=CURLY LEAF;Oryzabase Gene Symbol Synonym(s)=OsSET24%2C SDG711%2C EZ1%2C OsCLF;Oryzabase Gene Name Synonym(s)=SET protein 24%2C polycomb protein EZ1%2C SET DOMAIN GROUP 711;Note=H3K27 methyltransferase%2C Polycomb repressive complex2 (PRC2) key subunit%2C Enhancer of zeste [E(z)] genes%2C Long day repression of flowering;Transcript_evidence=AK111743;ORF_evidence=Q5VN06;GO=Molecular Function: protein binding (GO:0005515),Cellular Component: PcG protein complex (GO:0031519);InterPro=Histone-lysine N-methyltransferase%2C EZ (IPR025778),CXC domain (IPR026489),SET domain (IPR001214);NIAS_FLcDNA=J023052J10;Manual Curation=June 17%2C 2015;Literature_PMID=25400654,25957386;Oryzabase=8839;Expression=AK111743;TENOR=Os06t0275500-01;KEGG=Os06t0275500-01 (EC:2.1.1.43)
Chr06	irgsp1_rep	five_prime_UTR	9353713	9354005	.	+	.	Parent=Os06t0275500-01
Chr06	irgsp1_rep	CDS	9354006	9354027	.	+	0	Parent=Os06t0275500-01
Chr06	irgsp1_rep	CDS	9354128	9354231	.	+	2	Parent=Os06t0275500-01
Chr06	irgsp1_rep	CDS	9354340	9354659	.	+	0	Parent=Os06t0275500-01
Chr06	irgsp1_rep	CDS	9355450	9355611	.	+	1	Parent=Os06t0275500-01
Chr06	irgsp1_rep	CDS	9356334	9356418	.	+	1	Parent=Os06t0275500-01
Chr06	irgsp1_rep	CDS	9356535	9356684	.	+	0	Parent=Os06t0275500-01
Chr06	irgsp1_rep	CDS	9356771	9356818	.	+	0	Parent=Os06t0275500-01
Chr06	irgsp1_rep	CDS	9356888	9356956	.	+	0	Parent=Os06t0275500-01
Chr06	irgsp1_rep	CDS	9357080	9357783	.	+	0	Parent=Os06t0275500-01
Chr06	irgsp1_rep	CDS	9358609	9358744	.	+	1	Parent=Os06t0275500-01
Chr06	irgsp1_rep	CDS	9358819	9359039	.	+	0	Parent=Os06t0275500-01
Chr06	irgsp1_rep	CDS	9359538	9359669	.	+	1	Parent=Os06t0275500-01
Chr06	irgsp1_rep	CDS	9360499	9360589	.	+	1	Parent=Os06t0275500-01
Chr06	irgsp1_rep	CDS	9361061	9361108	.	+	0	Parent=Os06t0275500-01
Chr06	irgsp1_rep	CDS	9361187	9361315	.	+	0	Parent=Os06t0275500-01
Chr06	irgsp1_rep	CDS	9361540	9361809	.	+	0	Parent=Os06t0275500-01
Chr06	irgsp1_rep	three_prime_UTR	9361810	9362032	.	+	.	Parent=Os06t0275500-01
Chr06	irgsp1_rep	mRNA	9354338	9361797	.	-	.	ID=Os06t0275550-00;Name=Os06t0275550-00;Locus_id=Os06g0275550;Note=Hypothetical protein.;Transcript_evidence=tplb0062a23 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0275550-00
Chr06	irgsp1_rep	five_prime_UTR	9361523	9361797	.	-	.	Parent=Os06t0275550-00
Chr06	irgsp1_rep	five_prime_UTR	9361164	9361302	.	-	.	Parent=Os06t0275550-00
Chr06	irgsp1_rep	five_prime_UTR	9360485	9360619	.	-	.	Parent=Os06t0275550-00
Chr06	irgsp1_rep	five_prime_UTR	9359537	9359657	.	-	.	Parent=Os06t0275550-00
Chr06	irgsp1_rep	five_prime_UTR	9358887	9358938	.	-	.	Parent=Os06t0275550-00
Chr06	irgsp1_rep	five_prime_UTR	9358698	9358797	.	-	.	Parent=Os06t0275550-00
Chr06	irgsp1_rep	CDS	9358607	9358697	.	-	0	Parent=Os06t0275550-00
Chr06	irgsp1_rep	CDS	9357552	9357781	.	-	2	Parent=Os06t0275550-00
Chr06	irgsp1_rep	three_prime_UTR	9357490	9357551	.	-	.	Parent=Os06t0275550-00
Chr06	irgsp1_rep	three_prime_UTR	9356890	9356958	.	-	.	Parent=Os06t0275550-00
Chr06	irgsp1_rep	three_prime_UTR	9356520	9356727	.	-	.	Parent=Os06t0275550-00
Chr06	irgsp1_rep	three_prime_UTR	9356340	9356404	.	-	.	Parent=Os06t0275550-00
Chr06	irgsp1_rep	three_prime_UTR	9355436	9355620	.	-	.	Parent=Os06t0275550-00
Chr06	irgsp1_rep	three_prime_UTR	9354338	9354640	.	-	.	Parent=Os06t0275550-00
Chr06	irgsp1_rep	mRNA	9364131	9367997	.	+	.	ID=Os06t0275600-01;Name=Os06t0275600-01;Locus_id=Os06g0275600;Oryzabase Gene Symbol Synonym(s)=OsbHLH086%2C TA1;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 086%2C Transcriptional Activator protein 1;Note=Similar to TA1 protein (Fragment).;Transcript_evidence=AK103853 (DDBJ%2C Best hit);ORF_evidence=F1DKB4 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J033148M07;Oryzabase=15373;Expression=AK103853;TENOR=Os06t0275600-01;KEGG=Os06t0275600-01
Chr06	irgsp1_rep	five_prime_UTR	9364131	9364509	.	+	.	Parent=Os06t0275600-01
Chr06	irgsp1_rep	five_prime_UTR	9364903	9364916	.	+	.	Parent=Os06t0275600-01
Chr06	irgsp1_rep	CDS	9364917	9365519	.	+	0	Parent=Os06t0275600-01
Chr06	irgsp1_rep	CDS	9365609	9365833	.	+	0	Parent=Os06t0275600-01
Chr06	irgsp1_rep	CDS	9365922	9365987	.	+	0	Parent=Os06t0275600-01
Chr06	irgsp1_rep	CDS	9366070	9366138	.	+	0	Parent=Os06t0275600-01
Chr06	irgsp1_rep	CDS	9366237	9366308	.	+	0	Parent=Os06t0275600-01
Chr06	irgsp1_rep	CDS	9366390	9366581	.	+	0	Parent=Os06t0275600-01
Chr06	irgsp1_rep	CDS	9367297	9367383	.	+	0	Parent=Os06t0275600-01
Chr06	irgsp1_rep	three_prime_UTR	9367384	9367997	.	+	.	Parent=Os06t0275600-01
Chr06	irgsp1_rep	mRNA	9365581	9367971	.	+	.	ID=Os06t0275600-02;Name=Os06t0275600-02;Locus_id=Os06g0275600;Oryzabase Gene Symbol Synonym(s)=OsbHLH086%2C TA1;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 086%2C Transcriptional Activator protein 1;Note=Hypothetical conserved gene.;Transcript_evidence=AK101279 (DDBJ%2C Best hit);ORF_evidence=F1DKB4 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J033033C13;Oryzabase=15373;Expression=AK101279;TENOR=Os06t0275600-02;KEGG=Os06t0275600-02
Chr06	irgsp1_rep	five_prime_UTR	9365581	9365599	.	+	.	Parent=Os06t0275600-02
Chr06	irgsp1_rep	CDS	9365600	9365833	.	+	0	Parent=Os06t0275600-02
Chr06	irgsp1_rep	CDS	9365922	9365987	.	+	0	Parent=Os06t0275600-02
Chr06	irgsp1_rep	CDS	9366070	9366144	.	+	0	Parent=Os06t0275600-02
Chr06	irgsp1_rep	three_prime_UTR	9366145	9366308	.	+	.	Parent=Os06t0275600-02
Chr06	irgsp1_rep	three_prime_UTR	9366390	9367971	.	+	.	Parent=Os06t0275600-02
Chr06	irgsp1_rep	mRNA	9368199	9371951	.	-	.	ID=Os06t0275700-01;Name=Os06t0275700-01;Locus_id=Os06g0275700;Oryzabase Gene Symbol Synonym(s)=OsPUB22;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 22%2C U-box protein 22;Note=Similar to Beta-catenin repeat family protein.;Transcript_evidence=AK110058 (DDBJ%2C Best hit);ORF_evidence=C3SA81 (UniProt);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),U box domain (IPR003613),Armadillo-like helical (IPR011989),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Armadillo-type fold (IPR016024);NIAS_FLcDNA=002-160-D07;Oryzabase=17814;TENOR=Os06t0275700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	9371951	9371951	.	-	.	Parent=Os06t0275700-01
Chr06	irgsp1_rep	CDS	9370994	9371950	.	-	0	Parent=Os06t0275700-01
Chr06	irgsp1_rep	CDS	9370539	9370848	.	-	0	Parent=Os06t0275700-01
Chr06	irgsp1_rep	CDS	9368544	9370201	.	-	2	Parent=Os06t0275700-01
Chr06	irgsp1_rep	three_prime_UTR	9368199	9368543	.	-	.	Parent=Os06t0275700-01
Chr06	irgsp1_rep	mRNA	9396137	9399067	.	+	.	ID=Os06t0275800-01;Name=Os06t0275800-01;Locus_id=Os06g0275800;Oryzabase Gene Symbol Synonym(s)=NAA%2C OsATL4;Oryzabase Gene Name Synonym(s)=neutral amino acid transporter%2C amino acid transporter-like 4;Note=Amino acid transporter%2C transmembrane domain containing protein.;Transcript_evidence=AK120497 (DDBJ%2C Best hit);ORF_evidence=C3SA82 (UniProt);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=J013121D24;Oryzabase=16226;Expression=AK120497;TENOR=Os06t0275800-01;KEGG=Os06t0275800-01
Chr06	irgsp1_rep	five_prime_UTR	9396137	9396464	.	+	.	Parent=Os06t0275800-01
Chr06	irgsp1_rep	CDS	9396465	9396846	.	+	0	Parent=Os06t0275800-01
Chr06	irgsp1_rep	CDS	9397258	9397410	.	+	2	Parent=Os06t0275800-01
Chr06	irgsp1_rep	CDS	9397519	9397722	.	+	2	Parent=Os06t0275800-01
Chr06	irgsp1_rep	CDS	9397892	9398357	.	+	2	Parent=Os06t0275800-01
Chr06	irgsp1_rep	CDS	9398617	9398758	.	+	1	Parent=Os06t0275800-01
Chr06	irgsp1_rep	three_prime_UTR	9398759	9399067	.	+	.	Parent=Os06t0275800-01
Chr06	irgsp1_rep	mRNA	9396206	9399019	.	+	.	ID=Os06t0275800-02;Name=Os06t0275800-02;Locus_id=Os06g0275800;Oryzabase Gene Symbol Synonym(s)=NAA%2C OsATL4;Oryzabase Gene Name Synonym(s)=neutral amino acid transporter%2C amino acid transporter-like 4;Note=Amino acid transporter%2C transmembrane domain containing protein.;Transcript_evidence=AK099920 (DDBJ%2C Best hit);ORF_evidence=C3SA82 (UniProt);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=J013116L21;Oryzabase=16226;Expression=AK099920;TENOR=Os06t0275800-02;KEGG=Os06t0275800-02
Chr06	irgsp1_rep	five_prime_UTR	9396206	9396464	.	+	.	Parent=Os06t0275800-02
Chr06	irgsp1_rep	CDS	9396465	9396846	.	+	0	Parent=Os06t0275800-02
Chr06	irgsp1_rep	CDS	9397258	9397410	.	+	2	Parent=Os06t0275800-02
Chr06	irgsp1_rep	CDS	9397519	9397722	.	+	2	Parent=Os06t0275800-02
Chr06	irgsp1_rep	CDS	9397892	9398357	.	+	2	Parent=Os06t0275800-02
Chr06	irgsp1_rep	CDS	9398617	9398758	.	+	1	Parent=Os06t0275800-02
Chr06	irgsp1_rep	three_prime_UTR	9398759	9399019	.	+	.	Parent=Os06t0275800-02
Chr06	irgsp1_rep	mRNA	9396269	9398992	.	+	.	ID=Os06t0275800-03;Name=Os06t0275800-03;Locus_id=Os06g0275800;Oryzabase Gene Symbol Synonym(s)=NAA%2C OsATL4;Oryzabase Gene Name Synonym(s)=neutral amino acid transporter%2C amino acid transporter-like 4;Note=Amino acid transporter%2C transmembrane domain containing protein.;Transcript_evidence=AK066102 (DDBJ%2C Best hit);ORF_evidence=C3SA82 (UniProt);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=J013051P03;Oryzabase=16226;Expression=AK066102;TENOR=Os06t0275800-03;KEGG=Os06t0275800-03
Chr06	irgsp1_rep	five_prime_UTR	9396269	9396464	.	+	.	Parent=Os06t0275800-03
Chr06	irgsp1_rep	CDS	9396465	9396846	.	+	0	Parent=Os06t0275800-03
Chr06	irgsp1_rep	CDS	9397258	9397410	.	+	2	Parent=Os06t0275800-03
Chr06	irgsp1_rep	CDS	9397519	9397722	.	+	2	Parent=Os06t0275800-03
Chr06	irgsp1_rep	CDS	9397892	9398357	.	+	2	Parent=Os06t0275800-03
Chr06	irgsp1_rep	CDS	9398617	9398758	.	+	1	Parent=Os06t0275800-03
Chr06	irgsp1_rep	three_prime_UTR	9398759	9398992	.	+	.	Parent=Os06t0275800-03
Chr06	irgsp1_rep	mRNA	9400936	9408380	.	+	.	ID=Os06t0275900-01;Name=Os06t0275900-01;Locus_id=Os06g0275900;Oryzabase Gene Symbol Synonym(s)=kanadaptin;Oryzabase Gene Name Synonym(s)=Adaptor protein kanadaptin;Note=Forkhead-associated domain containing protein.;Transcript_evidence=AK066767 (DDBJ%2C Best hit);ORF_evidence=C3SA83 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Forkhead-associated (FHA) domain (IPR000253),SMAD/FHA domain (IPR008984);NIAS_FLcDNA=J013079D16;Oryzabase=16227;Expression=AK066767;TENOR=Os06t0275900-01;KEGG=Os06t0275900-01
Chr06	irgsp1_rep	five_prime_UTR	9400936	9401079	.	+	.	Parent=Os06t0275900-01
Chr06	irgsp1_rep	CDS	9401080	9401561	.	+	0	Parent=Os06t0275900-01
Chr06	irgsp1_rep	CDS	9401732	9401817	.	+	1	Parent=Os06t0275900-01
Chr06	irgsp1_rep	CDS	9402600	9402679	.	+	2	Parent=Os06t0275900-01
Chr06	irgsp1_rep	CDS	9403009	9403064	.	+	0	Parent=Os06t0275900-01
Chr06	irgsp1_rep	CDS	9403221	9403269	.	+	1	Parent=Os06t0275900-01
Chr06	irgsp1_rep	CDS	9403875	9404024	.	+	0	Parent=Os06t0275900-01
Chr06	irgsp1_rep	CDS	9404176	9404271	.	+	0	Parent=Os06t0275900-01
Chr06	irgsp1_rep	CDS	9404625	9404738	.	+	0	Parent=Os06t0275900-01
Chr06	irgsp1_rep	CDS	9404838	9404968	.	+	0	Parent=Os06t0275900-01
Chr06	irgsp1_rep	CDS	9405354	9405586	.	+	1	Parent=Os06t0275900-01
Chr06	irgsp1_rep	CDS	9407138	9407905	.	+	2	Parent=Os06t0275900-01
Chr06	irgsp1_rep	CDS	9407980	9408029	.	+	2	Parent=Os06t0275900-01
Chr06	irgsp1_rep	three_prime_UTR	9408030	9408380	.	+	.	Parent=Os06t0275900-01
Chr06	irgsp1_rep	mRNA	9401524	9408380	.	+	.	ID=Os06t0275900-02;Name=Os06t0275900-02;Locus_id=Os06g0275900;Oryzabase Gene Symbol Synonym(s)=kanadaptin;Oryzabase Gene Name Synonym(s)=Adaptor protein kanadaptin;Note=Similar to FHA domain protein.;Transcript_evidence=AK069382 (DDBJ%2C Best hit);ORF_evidence=C3SA83 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Forkhead-associated (FHA) domain (IPR000253),SMAD/FHA domain (IPR008984);NIAS_FLcDNA=J023013C12;Oryzabase=16227;Expression=AK069382;TENOR=Os06t0275900-02;KEGG=Os06t0275900-02
Chr06	irgsp1_rep	five_prime_UTR	9401524	9401561	.	+	.	Parent=Os06t0275900-02
Chr06	irgsp1_rep	five_prime_UTR	9401732	9401750	.	+	.	Parent=Os06t0275900-02
Chr06	irgsp1_rep	CDS	9401751	9401817	.	+	0	Parent=Os06t0275900-02
Chr06	irgsp1_rep	CDS	9402600	9402679	.	+	2	Parent=Os06t0275900-02
Chr06	irgsp1_rep	CDS	9403009	9403064	.	+	0	Parent=Os06t0275900-02
Chr06	irgsp1_rep	CDS	9403221	9403269	.	+	1	Parent=Os06t0275900-02
Chr06	irgsp1_rep	CDS	9403875	9404024	.	+	0	Parent=Os06t0275900-02
Chr06	irgsp1_rep	CDS	9404176	9404271	.	+	0	Parent=Os06t0275900-02
Chr06	irgsp1_rep	CDS	9404625	9404738	.	+	0	Parent=Os06t0275900-02
Chr06	irgsp1_rep	CDS	9404838	9404968	.	+	0	Parent=Os06t0275900-02
Chr06	irgsp1_rep	CDS	9405354	9405586	.	+	1	Parent=Os06t0275900-02
Chr06	irgsp1_rep	CDS	9407138	9407905	.	+	2	Parent=Os06t0275900-02
Chr06	irgsp1_rep	CDS	9407980	9408029	.	+	2	Parent=Os06t0275900-02
Chr06	irgsp1_rep	three_prime_UTR	9408030	9408380	.	+	.	Parent=Os06t0275900-02
Chr06	irgsp1_rep	mRNA	9408578	9408804	.	+	.	ID=Os06t0276001-01;Name=Os06t0276001-01;Locus_id=Os06g0276001;Note=Non-protein coding transcript.;Transcript_evidence=AK287734 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065141E17;TENOR=Os06t0276001-01
Chr06	irgsp1_rep	exon	9408578	9408804	.	+	.	Parent=Os06t0276001-01
Chr06	irgsp1_rep	mRNA	9418328	9421460	.	-	.	ID=Os06t0276300-01;Name=Os06t0276300-01;Locus_id=Os06g0276300;Note=NB-ARC domain containing protein.;Transcript_evidence=AK105315 (DDBJ%2C Best hit);ORF_evidence=Q2R0H0 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);NIAS_FLcDNA=001-117-E03;Expression=AK105315;TENOR=Os06t0276300-01;KEGG=Os06t0276300-01
Chr06	irgsp1_rep	five_prime_UTR	9421396	9421460	.	-	.	Parent=Os06t0276300-01
Chr06	irgsp1_rep	CDS	9418630	9421395	.	-	0	Parent=Os06t0276300-01
Chr06	irgsp1_rep	three_prime_UTR	9418328	9418629	.	-	.	Parent=Os06t0276300-01
Chr06	irgsp1_rep	mRNA	9418780	9421100	.	+	.	ID=Os06t0276750-00;Name=Os06t0276750-00;Locus_id=Os06g0276750;Note=Hypothetical protein.;Transcript_evidence=BT085076 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0276750-00
Chr06	irgsp1_rep	five_prime_UTR	9418780	9419145	.	+	.	Parent=Os06t0276750-00
Chr06	irgsp1_rep	five_prime_UTR	9419367	9419392	.	+	.	Parent=Os06t0276750-00
Chr06	irgsp1_rep	CDS	9419393	9419938	.	+	0	Parent=Os06t0276750-00
Chr06	irgsp1_rep	CDS	9420118	9420183	.	+	0	Parent=Os06t0276750-00
Chr06	irgsp1_rep	three_prime_UTR	9420184	9421100	.	+	.	Parent=Os06t0276750-00
Chr06	irgsp1_rep	mRNA	9562033	9563695	.	-	.	ID=Os06t0277850-00;Name=Os06t0277850-00;Locus_id=Os06g0277850;Note=Non-protein coding transcript.;Transcript_evidence=AK061160 (DDBJ%2C Secondary hit);ORF_evidence=NONE;TENOR=Os06t0277850-00
Chr06	irgsp1_rep	exon	9563274	9563695	.	-	.	Parent=Os06t0277850-00
Chr06	irgsp1_rep	exon	9563050	9563115	.	-	.	Parent=Os06t0277850-00
Chr06	irgsp1_rep	exon	9562578	9562734	.	-	.	Parent=Os06t0277850-00
Chr06	irgsp1_rep	exon	9562033	9562387	.	-	.	Parent=Os06t0277850-00
Chr06	irgsp1_rep	mRNA	9564356	9566944	.	-	.	ID=Os06t0278000-00;Name=Os06t0278000-00;Locus_id=Os06g0278000;Note=Glucoamylase%2C putatuve domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001174711.1 (RefSeq);InterPro=Glucoamylase%2C putatuve (IPR004314);TENOR=Os06t0278000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	9566783	9566944	.	-	0	Parent=Os06t0278000-00
Chr06	irgsp1_rep	CDS	9566575	9566661	.	-	0	Parent=Os06t0278000-00
Chr06	irgsp1_rep	CDS	9565875	9566045	.	-	0	Parent=Os06t0278000-00
Chr06	irgsp1_rep	CDS	9565154	9565207	.	-	0	Parent=Os06t0278000-00
Chr06	irgsp1_rep	CDS	9564895	9565041	.	-	0	Parent=Os06t0278000-00
Chr06	irgsp1_rep	CDS	9564356	9564736	.	-	0	Parent=Os06t0278000-00
Chr06	irgsp1_rep	mRNA	9564390	9566663	.	+	.	ID=Os06t0278150-00;Name=Os06t0278150-00;Locus_id=Os06g0278150;Note=Non-protein coding transcript.;Transcript_evidence=tplb0062i11 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os06t0278150-00
Chr06	irgsp1_rep	exon	9564390	9564735	.	+	.	Parent=Os06t0278150-00
Chr06	irgsp1_rep	exon	9564894	9565026	.	+	.	Parent=Os06t0278150-00
Chr06	irgsp1_rep	exon	9565803	9566047	.	+	.	Parent=Os06t0278150-00
Chr06	irgsp1_rep	exon	9566191	9566370	.	+	.	Parent=Os06t0278150-00
Chr06	irgsp1_rep	exon	9566507	9566663	.	+	.	Parent=Os06t0278150-00
Chr06	irgsp1_rep	mRNA	9593771	9594297	.	+	.	ID=Os06t0278300-00;Name=Os06t0278300-00;Locus_id=Os06g0278300;Note=Hypothetical protein.;Transcript_evidence=EU945299 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0278300-00
Chr06	irgsp1_rep	five_prime_UTR	9593771	9593772	.	+	.	Parent=Os06t0278300-00
Chr06	irgsp1_rep	CDS	9593773	9594198	.	+	0	Parent=Os06t0278300-00
Chr06	irgsp1_rep	three_prime_UTR	9594199	9594297	.	+	.	Parent=Os06t0278300-00
Chr06	irgsp1_rep	mRNA	9633342	9636447	.	+	.	ID=Os06t0278450-00;Name=Os06t0278450-00;Locus_id=Os06g0278450;Note=Hypothetical gene.;Transcript_evidence=CT837498 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os06t0278450-00;KEGG=Os06t0278450-00
Chr06	irgsp1_rep	five_prime_UTR	9633342	9633343	.	+	.	Parent=Os06t0278450-00
Chr06	irgsp1_rep	CDS	9633344	9633388	.	+	0	Parent=Os06t0278450-00
Chr06	irgsp1_rep	CDS	9634259	9634429	.	+	0	Parent=Os06t0278450-00
Chr06	irgsp1_rep	three_prime_UTR	9634430	9634895	.	+	.	Parent=Os06t0278450-00
Chr06	irgsp1_rep	three_prime_UTR	9636237	9636447	.	+	.	Parent=Os06t0278450-00
Chr06	irgsp1_rep	mRNA	9670245	9670575	.	-	.	ID=Os06t0279350-00;Name=Os06t0279350-00;Locus_id=Os06g0279350;Note=Conserved hypothetical protein.;Transcript_evidence=BT088266 (DDBJ);ORF_evidence=A2WYN9 (UniProt);TENOR=Os06t0279350-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	9670575	9670575	.	-	.	Parent=Os06t0279350-00
Chr06	irgsp1_rep	CDS	9670245	9670574	.	-	0	Parent=Os06t0279350-00
Chr06	irgsp1_rep	mRNA	9716234	9724868	.	-	.	ID=Os06t0279900-00;Name=Os06t0279900-00;Locus_id=Os06g0279900;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=AK360543 (DDBJ);ORF_evidence=Q2QZW8 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);Oryzabase=14965;TENOR=Os06t0279900-00
Chr06	irgsp1_rep	five_prime_UTR	9724442	9724868	.	-	.	Parent=Os06t0279900-00
Chr06	irgsp1_rep	five_prime_UTR	9718664	9718679	.	-	.	Parent=Os06t0279900-00
Chr06	irgsp1_rep	CDS	9716234	9718663	.	-	0	Parent=Os06t0279900-00
Chr06	irgsp1_rep	mRNA	9805281	9809057	.	-	.	ID=Os06t0280900-01;Name=Os06t0280900-01;Locus_id=Os06g0280900;Note=Conserved hypothetical protein.;Transcript_evidence=AK067409 (DDBJ%2C Best hit);ORF_evidence=Q7X5Z0 (UniProt);NIAS_FLcDNA=J013102H16;TENOR=Os06t0280900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	9807058	9809057	.	-	.	Parent=Os06t0280900-01
Chr06	irgsp1_rep	CDS	9806959	9807057	.	-	0	Parent=Os06t0280900-01
Chr06	irgsp1_rep	three_prime_UTR	9805281	9806958	.	-	.	Parent=Os06t0280900-01
Chr06	irgsp1_rep	mRNA	9805250	9806146	.	-	.	ID=Os06t0280900-02;Name=Os06t0280900-02;Locus_id=Os06g0280900;Note=Non-protein coding transcript.;Transcript_evidence=AK061934 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-042-D03;TENOR=Os06t0280900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	exon	9805250	9806146	.	-	.	Parent=Os06t0280900-02
Chr06	irgsp1_rep	mRNA	9830473	9832981	.	-	.	ID=Os06t0281300-01;Name=Os06t0281300-01;Locus_id=Os06g0281300;Note=Similar to O-methyltransferase ZRP4.;Transcript_evidence=AK288263 (DDBJ%2C Best hit);ORF_evidence=longestORF;GO=Molecular Function: O-methyltransferase activity (GO:0008171);InterPro=O-methyltransferase%2C family 2 (IPR001077);NIAS_FLcDNA=J090016D04;TENOR=Os06t0281300-01;KEGG=Os06t0281300-01
Chr06	irgsp1_rep	five_prime_UTR	9832496	9832981	.	-	.	Parent=Os06t0281300-01
Chr06	irgsp1_rep	CDS	9832187	9832495	.	-	0	Parent=Os06t0281300-01
Chr06	irgsp1_rep	three_prime_UTR	9830473	9832186	.	-	.	Parent=Os06t0281300-01
Chr06	irgsp1_rep	mRNA	9835173	9835225	.	-	.	ID=Os06t0281350-00;Name=Os06t0281350-00;Locus_id=Os06g0281350;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0281350-00
Chr06	irgsp1_rep	exon	9835173	9835225	.	-	.	Parent=Os06t0281350-00
Chr06	irgsp1_rep	mRNA	9840913	9857074	.	-	.	ID=Os06t0281400-01;Name=Os06t0281400-01;Locus_id=Os06g0281400;Note=Similar to DNA topoisomerase.;Transcript_evidence=AK121044 (DDBJ%2C Best hit);ORF_evidence=A3BAP2 (UniProt);GO=Biological Process: DNA topological change (GO:0006265),Cellular Component: Chromosome (GO:0005694),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA topoisomerase activity (GO:0003916),Molecular Function: DNA topoisomerase type I activity (GO:0003917);InterPro=DNA topoisomerase%2C type IA (IPR000380),DNA topoisomerase%2C type IA%2C domain 2 (IPR003601),DNA topoisomerase%2C type IA%2C DNA-binding (IPR003602),DNA topoisomerase I%2C bacterial-type (IPR005733),Toprim domain (IPR006171),DNA topoisomerase%2C type IA%2C central (IPR013497),DNA topoisomerase%2C type IA%2C central region%2C subdomain 1 (IPR013824),DNA topoisomerase%2C type IA%2C central region%2C subdomain 3 (IPR013826),DNA topoisomerase%2C type IA%2C core domain (IPR023405),DNA topoisomerase%2C type IA%2C active site (IPR023406);NIAS_FLcDNA=J023053F03;TENOR=Os06t0281400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	9856981	9857074	.	-	.	Parent=Os06t0281400-01
Chr06	irgsp1_rep	CDS	9856885	9856980	.	-	0	Parent=Os06t0281400-01
Chr06	irgsp1_rep	CDS	9855365	9856365	.	-	0	Parent=Os06t0281400-01
Chr06	irgsp1_rep	CDS	9853833	9854484	.	-	1	Parent=Os06t0281400-01
Chr06	irgsp1_rep	CDS	9853637	9853723	.	-	0	Parent=Os06t0281400-01
Chr06	irgsp1_rep	CDS	9852241	9852287	.	-	0	Parent=Os06t0281400-01
Chr06	irgsp1_rep	CDS	9850338	9850447	.	-	1	Parent=Os06t0281400-01
Chr06	irgsp1_rep	CDS	9849113	9849213	.	-	2	Parent=Os06t0281400-01
Chr06	irgsp1_rep	CDS	9848289	9848381	.	-	0	Parent=Os06t0281400-01
Chr06	irgsp1_rep	CDS	9847395	9847478	.	-	0	Parent=Os06t0281400-01
Chr06	irgsp1_rep	CDS	9847188	9847271	.	-	0	Parent=Os06t0281400-01
Chr06	irgsp1_rep	CDS	9846991	9847059	.	-	0	Parent=Os06t0281400-01
Chr06	irgsp1_rep	CDS	9846135	9846194	.	-	0	Parent=Os06t0281400-01
Chr06	irgsp1_rep	CDS	9844886	9844957	.	-	0	Parent=Os06t0281400-01
Chr06	irgsp1_rep	CDS	9844080	9844214	.	-	0	Parent=Os06t0281400-01
Chr06	irgsp1_rep	three_prime_UTR	9842698	9844079	.	-	.	Parent=Os06t0281400-01
Chr06	irgsp1_rep	three_prime_UTR	9842445	9842556	.	-	.	Parent=Os06t0281400-01
Chr06	irgsp1_rep	three_prime_UTR	9842274	9842363	.	-	.	Parent=Os06t0281400-01
Chr06	irgsp1_rep	three_prime_UTR	9842095	9842160	.	-	.	Parent=Os06t0281400-01
Chr06	irgsp1_rep	three_prime_UTR	9841926	9842021	.	-	.	Parent=Os06t0281400-01
Chr06	irgsp1_rep	three_prime_UTR	9840913	9841624	.	-	.	Parent=Os06t0281400-01
Chr06	irgsp1_rep	mRNA	9841154	9841405	.	+	.	ID=Os06t0281501-00;Name=Os06t0281501-00;Locus_id=Os06g0281501;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os06t0281501-00;KEGG=Os06t0281501-00
Chr06	irgsp1_rep	CDS	9841154	9841405	.	+	0	Parent=Os06t0281501-00
Chr06	irgsp1_rep	mRNA	9857813	9858436	.	-	.	ID=Os06t0281550-00;Name=Os06t0281550-00;Locus_id=Os06g0281550;Note=Similar to Thaumatin-like protein.;Transcript_evidence=AB239930 (DDBJ);ORF_evidence=B7SDH2 (UniProt);InterPro=Thaumatin%2C pathogenesis-related (IPR001938);TENOR=Os06t0281550-00
Chr06	irgsp1_rep	CDS	9857813	9858436	.	-	0	Parent=Os06t0281550-00
Chr06	irgsp1_rep	mRNA	9861878	9863938	.	-	.	ID=Os06t0281800-01;Name=Os06t0281800-01;Locus_id=Os06g0281800;Oryzabase Gene Symbol Synonym(s)=OsBURP10;Oryzabase Gene Name Synonym(s)=BURP domain-containing protein 10;Note=BURP domain containing protein.;Transcript_evidence=AK064437 (DDBJ%2C Best hit);ORF_evidence=Q5VN46 (UniProt);InterPro=BURP (IPR004873);NIAS_FLcDNA=002-110-D10;Oryzabase=15049;Expression=AK064437;TENOR=Os06t0281800-01;KEGG=Os06t0281800-01
Chr06	irgsp1_rep	five_prime_UTR	9863865	9863938	.	-	.	Parent=Os06t0281800-01
Chr06	irgsp1_rep	CDS	9863811	9863864	.	-	0	Parent=Os06t0281800-01
Chr06	irgsp1_rep	CDS	9863370	9863514	.	-	0	Parent=Os06t0281800-01
Chr06	irgsp1_rep	CDS	9862130	9862983	.	-	2	Parent=Os06t0281800-01
Chr06	irgsp1_rep	three_prime_UTR	9861878	9862129	.	-	.	Parent=Os06t0281800-01
Chr06	irgsp1_rep	mRNA	9870664	9872417	.	-	.	ID=Os06t0282000-01;Name=Os06t0282000-01;Locus_id=Os06g0282000;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK243685 (DDBJ%2C Best hit);ORF_evidence=C3SA85 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J100090N09;TENOR=Os06t0282000-01;KEGG=Os06t0282000-01
Chr06	irgsp1_rep	five_prime_UTR	9872353	9872417	.	-	.	Parent=Os06t0282000-01
Chr06	irgsp1_rep	CDS	9870904	9872352	.	-	0	Parent=Os06t0282000-01
Chr06	irgsp1_rep	three_prime_UTR	9870664	9870903	.	-	.	Parent=Os06t0282000-01
Chr06	irgsp1_rep	mRNA	9910738	9922589	.	+	.	ID=Os06t0282400-00;Name=Os06t0282400-00;Locus_id=Os06g0282400;Note=Similar to UDP-glycosyltransferase.;Transcript_evidence=EU958030 (DDBJ);ORF_evidence=C3SA85 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os06t0282400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	9910738	9911712	.	+	0	Parent=Os06t0282400-00
Chr06	irgsp1_rep	CDS	9922077	9922589	.	+	0	Parent=Os06t0282400-00
Chr06	irgsp1_rep	mRNA	9984183	9984598	.	+	.	ID=Os06t0282750-00;Name=Os06t0282750-00;Locus_id=Os06g0282750;Note=Hypothetical protein.;Transcript_evidence=AK372466 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0282750-00
Chr06	irgsp1_rep	CDS	9984183	9984598	.	+	0	Parent=Os06t0282750-00
Chr06	irgsp1_rep	mRNA	9996771	9998385	.	-	.	ID=Os06t0283100-00;Name=Os06t0283100-00;Locus_id=Os06g0283100;Oryzabase Gene Symbol Synonym(s)=UGT;Note=Similar to UDP-glycosyltransferase.;Transcript_evidence=CT836284 (DDBJ%2C Best hit);ORF_evidence=C3SA85 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);Oryzabase=18244;TENOR=Os06t0283100-00;KEGG=Os06t0283100-00
Chr06	irgsp1_rep	five_prime_UTR	9998325	9998385	.	-	.	Parent=Os06t0283100-00
Chr06	irgsp1_rep	CDS	9996897	9998324	.	-	0	Parent=Os06t0283100-00
Chr06	irgsp1_rep	three_prime_UTR	9996771	9996896	.	-	.	Parent=Os06t0283100-00
Chr06	irgsp1_rep	mRNA	10003546	10006951	.	+	.	ID=Os06t0283200-01;Name=Os06t0283200-01;Locus_id=Os06g0283200;Oryzabase Gene Symbol Synonym(s)=OsRFP;Oryzabase Gene Name Synonym(s)=RING finger protein;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK073829 (DDBJ%2C Best hit);ORF_evidence=C3SA86 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957),Zinc finger%2C PHD-type%2C conserved site (IPR019786),Zinc finger%2C PHD-finger (IPR019787);NIAS_FLcDNA=J033068N07;Oryzabase=21166;Expression=AK073829;TENOR=Os06t0283200-01;KEGG=Os06t0283200-01
Chr06	irgsp1_rep	five_prime_UTR	10003546	10003573	.	+	.	Parent=Os06t0283200-01
Chr06	irgsp1_rep	CDS	10003574	10003861	.	+	0	Parent=Os06t0283200-01
Chr06	irgsp1_rep	CDS	10004661	10006428	.	+	0	Parent=Os06t0283200-01
Chr06	irgsp1_rep	CDS	10006516	10006751	.	+	2	Parent=Os06t0283200-01
Chr06	irgsp1_rep	three_prime_UTR	10006752	10006951	.	+	.	Parent=Os06t0283200-01
Chr06	irgsp1_rep	mRNA	10009636	10013501	.	+	.	ID=Os06t0283300-01;Name=Os06t0283300-01;Locus_id=Os06g0283300;Note=Similar to nodulation receptor kinase.;Transcript_evidence=AK288206 (DDBJ%2C Best hit);ORF_evidence=NP_001151327.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J090009A11;TENOR=Os06t0283300-01;KEGG=Os06t0283300-01
Chr06	irgsp1_rep	five_prime_UTR	10009636	10009805	.	+	.	Parent=Os06t0283300-01
Chr06	irgsp1_rep	five_prime_UTR	10010031	10010133	.	+	.	Parent=Os06t0283300-01
Chr06	irgsp1_rep	CDS	10010134	10010477	.	+	0	Parent=Os06t0283300-01
Chr06	irgsp1_rep	CDS	10010660	10010813	.	+	1	Parent=Os06t0283300-01
Chr06	irgsp1_rep	CDS	10011386	10011512	.	+	0	Parent=Os06t0283300-01
Chr06	irgsp1_rep	CDS	10011730	10011815	.	+	2	Parent=Os06t0283300-01
Chr06	irgsp1_rep	CDS	10011902	10011973	.	+	0	Parent=Os06t0283300-01
Chr06	irgsp1_rep	CDS	10012266	10012469	.	+	0	Parent=Os06t0283300-01
Chr06	irgsp1_rep	CDS	10012915	10013232	.	+	0	Parent=Os06t0283300-01
Chr06	irgsp1_rep	three_prime_UTR	10013233	10013501	.	+	.	Parent=Os06t0283300-01
Chr06	irgsp1_rep	mRNA	10009698	10012705	.	+	.	ID=Os06t0283300-02;Name=Os06t0283300-02;Locus_id=Os06g0283300;Note=Similar to nodulation receptor kinase.;Transcript_evidence=AK287970 (DDBJ%2C Best hit);ORF_evidence=NP_001151327.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J075072K11;TENOR=Os06t0283300-02;KEGG=Os06t0283300-02
Chr06	irgsp1_rep	five_prime_UTR	10009698	10009805	.	+	.	Parent=Os06t0283300-02
Chr06	irgsp1_rep	five_prime_UTR	10010031	10010133	.	+	.	Parent=Os06t0283300-02
Chr06	irgsp1_rep	CDS	10010134	10010477	.	+	0	Parent=Os06t0283300-02
Chr06	irgsp1_rep	CDS	10010660	10010813	.	+	1	Parent=Os06t0283300-02
Chr06	irgsp1_rep	CDS	10011386	10011512	.	+	0	Parent=Os06t0283300-02
Chr06	irgsp1_rep	CDS	10011730	10011815	.	+	2	Parent=Os06t0283300-02
Chr06	irgsp1_rep	CDS	10011902	10011973	.	+	0	Parent=Os06t0283300-02
Chr06	irgsp1_rep	CDS	10012266	10012484	.	+	0	Parent=Os06t0283300-02
Chr06	irgsp1_rep	three_prime_UTR	10012485	10012705	.	+	.	Parent=Os06t0283300-02
Chr06	irgsp1_rep	mRNA	10013892	10017978	.	-	.	ID=Os06t0283400-01;Name=Os06t0283400-01;Locus_id=Os06g0283400;Note=Phosphatidylinositol 3- and 4-kinase%2C catalytic domain containing protein.;Transcript_evidence=AK072153 (DDBJ%2C Best hit);ORF_evidence=C3SA88 (UniProt);GO=Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Phosphatidylinositol 3-/4-kinase%2C catalytic (IPR000403);NIAS_FLcDNA=J013132I15;Expression=AK072153;TENOR=Os06t0283400-01;KEGG=Os06t0283400-01
Chr06	irgsp1_rep	five_prime_UTR	10017672	10017978	.	-	.	Parent=Os06t0283400-01
Chr06	irgsp1_rep	five_prime_UTR	10016372	10016516	.	-	.	Parent=Os06t0283400-01
Chr06	irgsp1_rep	CDS	10014269	10016371	.	-	0	Parent=Os06t0283400-01
Chr06	irgsp1_rep	three_prime_UTR	10013892	10014268	.	-	.	Parent=Os06t0283400-01
Chr06	irgsp1_rep	mRNA	10082204	10087094	.	-	.	ID=Os06t0284200-02;Name=Os06t0284200-02;Locus_id=Os06g0284200;Note=Protein of unknown function DUF246%2C plant family protein.;Transcript_evidence=AK070550 (DDBJ%2C Best hit),AK068496 (DDBJ%2C Best hit);ORF_evidence=Q9LMF6 (UniProt);NIAS_FLcDNA=J023061C04,J013155M21;Expression=AK070550;TENOR=Os06t0284200-02;KEGG=Os06t0284200-02
Chr06	irgsp1_rep	five_prime_UTR	10086675	10087094	.	-	.	Parent=Os06t0284200-02
Chr06	irgsp1_rep	CDS	10086368	10086674	.	-	0	Parent=Os06t0284200-02
Chr06	irgsp1_rep	CDS	10085243	10085310	.	-	2	Parent=Os06t0284200-02
Chr06	irgsp1_rep	CDS	10085055	10085143	.	-	0	Parent=Os06t0284200-02
Chr06	irgsp1_rep	CDS	10084788	10084953	.	-	1	Parent=Os06t0284200-02
Chr06	irgsp1_rep	CDS	10084367	10084656	.	-	0	Parent=Os06t0284200-02
Chr06	irgsp1_rep	CDS	10084034	10084238	.	-	1	Parent=Os06t0284200-02
Chr06	irgsp1_rep	CDS	10083756	10083913	.	-	0	Parent=Os06t0284200-02
Chr06	irgsp1_rep	CDS	10083327	10083570	.	-	1	Parent=Os06t0284200-02
Chr06	irgsp1_rep	three_prime_UTR	10082204	10083326	.	-	.	Parent=Os06t0284200-02
Chr06	irgsp1_rep	mRNA	10101308	10102349	.	+	.	ID=Os06t0284500-00;Name=Os06t0284500-00;Locus_id=Os06g0284500;CGSNL Gene Symbol=DOF20;CGSNL Gene Name=DNA BINDING WITH ONE FINGER 20;Oryzabase Gene Symbol Synonym(s)=OsDof20%2C Dof20%2C OsDof-20;Oryzabase Gene Name Synonym(s)=Dof zinc factor 20%2C Dof transcription factor 20;Note=Zinc finger%2C Dof-type family protein.;Transcript_evidence=AK374973 (DDBJ);ORF_evidence=Q58FK8 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C Dof-type (IPR003851);Oryzabase=8810;TENOR=Os06t0284500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	10101308	10101439	.	+	.	Parent=Os06t0284500-00
Chr06	irgsp1_rep	CDS	10101440	10102309	.	+	0	Parent=Os06t0284500-00
Chr06	irgsp1_rep	three_prime_UTR	10102310	10102349	.	+	.	Parent=Os06t0284500-00
Chr06	irgsp1_rep	mRNA	10120998	10124400	.	+	.	ID=Os06t0284800-01;Name=Os06t0284800-01;Locus_id=Os06g0284800;Note=Spectrin repeat containing protein.;Transcript_evidence=AK066358 (DDBJ%2C Best hit);ORF_evidence=B8B0M1 (UniProt);InterPro=Vps5 C-terminal (IPR015404);NIAS_FLcDNA=J013063G02;Expression=AK066358;TENOR=Os06t0284800-01;KEGG=Os06t0284800-01
Chr06	irgsp1_rep	five_prime_UTR	10120998	10121026	.	+	.	Parent=Os06t0284800-01
Chr06	irgsp1_rep	CDS	10121027	10121176	.	+	0	Parent=Os06t0284800-01
Chr06	irgsp1_rep	CDS	10121286	10121354	.	+	0	Parent=Os06t0284800-01
Chr06	irgsp1_rep	CDS	10121754	10122113	.	+	0	Parent=Os06t0284800-01
Chr06	irgsp1_rep	CDS	10123166	10123384	.	+	0	Parent=Os06t0284800-01
Chr06	irgsp1_rep	CDS	10124088	10124237	.	+	0	Parent=Os06t0284800-01
Chr06	irgsp1_rep	three_prime_UTR	10124238	10124400	.	+	.	Parent=Os06t0284800-01
Chr06	irgsp1_rep	mRNA	10126921	10127396	.	+	.	ID=Os06t0284900-00;Name=Os06t0284900-00;Locus_id=Os06g0284900;CGSNL Gene Symbol=AGP7;CGSNL Gene Name=ARABINOGALACTAN PROTEIN 7;Oryzabase Gene Symbol Synonym(s)=OsAGP7;Oryzabase Gene Name Synonym(s)=Arabinogalactan protein 7;Note=Hypothetical protein.;Transcript_evidence=BT041628 (DDBJ);ORF_evidence=longestORF;Oryzabase=11300;TENOR=Os06t0284900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	10126921	10126921	.	+	.	Parent=Os06t0284900-00
Chr06	irgsp1_rep	CDS	10126922	10127221	.	+	0	Parent=Os06t0284900-00
Chr06	irgsp1_rep	three_prime_UTR	10127222	10127396	.	+	.	Parent=Os06t0284900-00
Chr06	irgsp1_rep	mRNA	10131033	10131804	.	+	.	ID=Os06t0285100-00;Name=Os06t0285100-00;Locus_id=Os06g0285100;CGSNL Gene Symbol=FLA23;CGSNL Gene Name=FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 23;Oryzabase Gene Symbol Synonym(s)=OsFLA23;Oryzabase Gene Name Synonym(s)=fasciclin-like AGP 23%2C fasciclin-like arabinogalactan protein 23;Note=Similar to endosperm specific protein1.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001105408.1 (RefSeq);InterPro=FAS1 domain (IPR000782);Oryzabase=11358;TENOR=Os06t0285100-00
Chr06	irgsp1_rep	CDS	10131033	10131097	.	+	0	Parent=Os06t0285100-00
Chr06	irgsp1_rep	CDS	10131150	10131804	.	+	1	Parent=Os06t0285100-00
Chr06	irgsp1_rep	mRNA	10137823	10138746	.	+	.	ID=Os06t0285200-01;Name=Os06t0285200-01;Locus_id=Os06g0285200;RAP-DB Gene Symbol Synonym(s)=OsNF-YB9%2C OsHAP3D;CGSNL Gene Symbol=HAP3D;CGSNL Gene Name=HAP3D SUBUNIT OF CCAAT-BOX BINDING COMPLEX;Oryzabase Gene Symbol Synonym(s)=OsHAP3D%2C OsEnS-83%2C OsNF-YB9%2C NF-YB9%2C NFYB9;Oryzabase Gene Name Synonym(s)=HAP3 subunit D%2C LEC1-type 3 subunit protein-D%2C endosperm-specific gene 83%2C NUCLEAR FACTOR-Y subunit B9%2C NUCLEAR FACTOR-Y subunit NF-YB9%2C HAP3 SUBUNIT D%2C NF-YB subunit 9%2C NF-YB family 9;Note=Nuclear Factor-Y (NF-Y) family of transcription factor%2C Control of heading%2C Regulation of reproductive growth and development;Transcript_evidence=AK109660;ORF_evidence=Q5VNF4;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein heterodimerization activity (GO:0046982),Cellular Component: nucleus (GO:0005634);InterPro=Histone-fold (IPR009072),Transcription factor CBF/NF-Y/archaeal histone domain (IPR003958),Transcription factor%2C NFYB/HAP3%2C conserved site (IPR003956);NIAS_FLcDNA=002-141-E08;Manual Curation=September 10%2C 2019;Literature_PMID=31482329,18193457;Oryzabase=8483;Expression=AK109660;TENOR=Os06t0285200-01;KEGG=Os06t0285200-01;Subcellular location=cytoplasm (GO:0005737) [in the vicinity of the nucleus]
Chr06	irgsp1_rep	five_prime_UTR	10137823	10137835	.	+	.	Parent=Os06t0285200-01
Chr06	irgsp1_rep	CDS	10137836	10138588	.	+	0	Parent=Os06t0285200-01
Chr06	irgsp1_rep	three_prime_UTR	10138589	10138746	.	+	.	Parent=Os06t0285200-01
Chr06	irgsp1_rep	mRNA	10146888	10149402	.	+	.	ID=Os06t0285400-01;Name=Os06t0285400-01;Locus_id=Os06g0285400;Note=Similar to Serine/threonine-specific kinase like protein.;Transcript_evidence=AK067208 (DDBJ%2C Best hit);ORF_evidence=A2YBT5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Legume lectin%2C beta chain%2C Mn/Ca-binding site (IPR019825);NIAS_FLcDNA=J013097F02;Expression=AK067208;TENOR=Os06t0285400-01;KEGG=Os06t0285400-01
Chr06	irgsp1_rep	five_prime_UTR	10146888	10146995	.	+	.	Parent=Os06t0285400-01
Chr06	irgsp1_rep	CDS	10146996	10149092	.	+	0	Parent=Os06t0285400-01
Chr06	irgsp1_rep	three_prime_UTR	10149093	10149402	.	+	.	Parent=Os06t0285400-01
Chr06	irgsp1_rep	mRNA	10147783	10149285	.	+	.	ID=Os06t0285400-02;Name=Os06t0285400-02;Locus_id=Os06g0285400;Note=Similar to predicted protein.;Transcript_evidence=AK105829 (DDBJ%2C Best hit);ORF_evidence=XP_002873076.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-203-E05;Expression=AK105829;TENOR=Os06t0285400-02;KEGG=Os06t0285400-02
Chr06	irgsp1_rep	five_prime_UTR	10147783	10147784	.	+	.	Parent=Os06t0285400-02
Chr06	irgsp1_rep	CDS	10147785	10149092	.	+	0	Parent=Os06t0285400-02
Chr06	irgsp1_rep	three_prime_UTR	10149093	10149285	.	+	.	Parent=Os06t0285400-02
Chr06	irgsp1_rep	mRNA	10184016	10185175	.	-	.	ID=Os06t0285900-00;Name=Os06t0285900-00;Locus_id=Os06g0285900;Note=Similar to embryogenesis transmembrane protein.;Transcript_evidence=CT837892 (DDBJ%2C Best hit);ORF_evidence=NP_001151023.1 (RefSeq);TENOR=Os06t0285900-00;KEGG=Os06t0285900-00
Chr06	irgsp1_rep	five_prime_UTR	10185154	10185175	.	-	.	Parent=Os06t0285900-00
Chr06	irgsp1_rep	CDS	10184899	10185153	.	-	0	Parent=Os06t0285900-00
Chr06	irgsp1_rep	CDS	10184358	10184804	.	-	0	Parent=Os06t0285900-00
Chr06	irgsp1_rep	three_prime_UTR	10184016	10184357	.	-	.	Parent=Os06t0285900-00
Chr06	irgsp1_rep	mRNA	10184539	10203254	.	+	.	ID=Os06t0285920-00;Name=Os06t0285920-00;Locus_id=Os06g0285920;Note=Hypothetical protein.;Transcript_evidence=FP101342 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0285920-00
Chr06	irgsp1_rep	five_prime_UTR	10184539	10184540	.	+	.	Parent=Os06t0285920-00
Chr06	irgsp1_rep	CDS	10184541	10184812	.	+	0	Parent=Os06t0285920-00
Chr06	irgsp1_rep	CDS	10184905	10184980	.	+	1	Parent=Os06t0285920-00
Chr06	irgsp1_rep	three_prime_UTR	10184981	10185096	.	+	.	Parent=Os06t0285920-00
Chr06	irgsp1_rep	three_prime_UTR	10202706	10202935	.	+	.	Parent=Os06t0285920-00
Chr06	irgsp1_rep	three_prime_UTR	10203126	10203254	.	+	.	Parent=Os06t0285920-00
Chr06	irgsp1_rep	mRNA	10279629	10280577	.	-	.	ID=Os06t0286146-00;Name=Os06t0286146-00;Locus_id=Os06g0286146;Note=Similar to Embryogenesis transmembrane protein.;Transcript_evidence=BT040966 (DDBJ);ORF_evidence=B6TV85 (UniProt);TENOR=Os06t0286146-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	10280549	10280577	.	-	.	Parent=Os06t0286146-00
Chr06	irgsp1_rep	CDS	10280136	10280548	.	-	0	Parent=Os06t0286146-00
Chr06	irgsp1_rep	CDS	10279629	10280046	.	-	1	Parent=Os06t0286146-00
Chr06	irgsp1_rep	mRNA	10287645	10288678	.	+	.	ID=Os06t0286228-01;Name=Os06t0286228-01;Locus_id=Os06g0286228;CGSNL Gene Symbol=ENODL16;CGSNL Gene Name=EARLY NODULIN LIKE PROTEIN 16;Oryzabase Gene Symbol Synonym(s)=OsENODL16;Oryzabase Gene Name Synonym(s)=early nodulin-like protein 16;Note=Cupredoxin domain containing protein.;Transcript_evidence=AK069113 (DDBJ%2C Best hit);ORF_evidence=B6TIS7 (UniProt);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);NIAS_FLcDNA=J023007I01;Oryzabase=9741;TENOR=Os06t0286228-01;KEGG=Os06t0286228-01
Chr06	irgsp1_rep	five_prime_UTR	10287645	10287744	.	+	.	Parent=Os06t0286228-01
Chr06	irgsp1_rep	CDS	10287745	10287949	.	+	0	Parent=Os06t0286228-01
Chr06	irgsp1_rep	CDS	10288061	10288524	.	+	2	Parent=Os06t0286228-01
Chr06	irgsp1_rep	three_prime_UTR	10288525	10288678	.	+	.	Parent=Os06t0286228-01
Chr06	irgsp1_rep	mRNA	10341158	10343466	.	+	.	ID=Os06t0286310-01;Name=Os06t0286310-01;Locus_id=Os06g0286310;Note=Similar to Oxidoreductase-like protein.;Transcript_evidence=AK107495 (DDBJ%2C Best hit);ORF_evidence=A1XFD0 (UniProt);NIAS_FLcDNA=002-129-D07;TENOR=Os06t0286310-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	10341158	10341197	.	+	.	Parent=Os06t0286310-01
Chr06	irgsp1_rep	CDS	10341198	10341518	.	+	0	Parent=Os06t0286310-01
Chr06	irgsp1_rep	three_prime_UTR	10341519	10342481	.	+	.	Parent=Os06t0286310-01
Chr06	irgsp1_rep	three_prime_UTR	10342645	10342831	.	+	.	Parent=Os06t0286310-01
Chr06	irgsp1_rep	three_prime_UTR	10342979	10343466	.	+	.	Parent=Os06t0286310-01
Chr06	irgsp1_rep	mRNA	10344270	10358301	.	-	.	ID=Os06t0286351-01;Name=Os06t0286351-01;Locus_id=Os06g0286351;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=AK121119 (DDBJ%2C Best hit);ORF_evidence=A1XFD1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023074F05;TENOR=Os06t0286351-01;KEGG=Os06t0286351-01
Chr06	irgsp1_rep	five_prime_UTR	10358195	10358301	.	-	.	Parent=Os06t0286351-01
Chr06	irgsp1_rep	CDS	10358102	10358194	.	-	0	Parent=Os06t0286351-01
Chr06	irgsp1_rep	CDS	10355271	10355474	.	-	0	Parent=Os06t0286351-01
Chr06	irgsp1_rep	CDS	10354974	10355155	.	-	0	Parent=Os06t0286351-01
Chr06	irgsp1_rep	CDS	10354096	10354222	.	-	1	Parent=Os06t0286351-01
Chr06	irgsp1_rep	CDS	10353736	10353954	.	-	0	Parent=Os06t0286351-01
Chr06	irgsp1_rep	CDS	10353343	10353559	.	-	0	Parent=Os06t0286351-01
Chr06	irgsp1_rep	CDS	10353112	10353257	.	-	2	Parent=Os06t0286351-01
Chr06	irgsp1_rep	CDS	10352856	10353001	.	-	0	Parent=Os06t0286351-01
Chr06	irgsp1_rep	CDS	10352362	10352511	.	-	1	Parent=Os06t0286351-01
Chr06	irgsp1_rep	CDS	10352225	10352273	.	-	1	Parent=Os06t0286351-01
Chr06	irgsp1_rep	CDS	10351954	10352142	.	-	0	Parent=Os06t0286351-01
Chr06	irgsp1_rep	CDS	10351422	10351604	.	-	0	Parent=Os06t0286351-01
Chr06	irgsp1_rep	CDS	10350962	10351113	.	-	0	Parent=Os06t0286351-01
Chr06	irgsp1_rep	CDS	10350740	10350866	.	-	1	Parent=Os06t0286351-01
Chr06	irgsp1_rep	CDS	10350502	10350654	.	-	0	Parent=Os06t0286351-01
Chr06	irgsp1_rep	CDS	10350355	10350420	.	-	0	Parent=Os06t0286351-01
Chr06	irgsp1_rep	CDS	10350128	10350264	.	-	0	Parent=Os06t0286351-01
Chr06	irgsp1_rep	CDS	10349913	10350030	.	-	1	Parent=Os06t0286351-01
Chr06	irgsp1_rep	CDS	10349678	10349812	.	-	0	Parent=Os06t0286351-01
Chr06	irgsp1_rep	CDS	10349384	10349583	.	-	0	Parent=Os06t0286351-01
Chr06	irgsp1_rep	CDS	10348200	10348350	.	-	1	Parent=Os06t0286351-01
Chr06	irgsp1_rep	CDS	10347943	10348086	.	-	0	Parent=Os06t0286351-01
Chr06	irgsp1_rep	CDS	10347724	10347804	.	-	0	Parent=Os06t0286351-01
Chr06	irgsp1_rep	CDS	10347082	10347636	.	-	0	Parent=Os06t0286351-01
Chr06	irgsp1_rep	CDS	10346890	10346991	.	-	0	Parent=Os06t0286351-01
Chr06	irgsp1_rep	CDS	10346639	10346712	.	-	0	Parent=Os06t0286351-01
Chr06	irgsp1_rep	CDS	10346503	10346554	.	-	1	Parent=Os06t0286351-01
Chr06	irgsp1_rep	CDS	10345811	10345897	.	-	0	Parent=Os06t0286351-01
Chr06	irgsp1_rep	CDS	10345684	10345721	.	-	0	Parent=Os06t0286351-01
Chr06	irgsp1_rep	CDS	10345290	10345358	.	-	1	Parent=Os06t0286351-01
Chr06	irgsp1_rep	CDS	10345060	10345223	.	-	1	Parent=Os06t0286351-01
Chr06	irgsp1_rep	CDS	10344819	10344958	.	-	2	Parent=Os06t0286351-01
Chr06	irgsp1_rep	CDS	10344692	10344727	.	-	0	Parent=Os06t0286351-01
Chr06	irgsp1_rep	three_prime_UTR	10344270	10344691	.	-	.	Parent=Os06t0286351-01
Chr06	irgsp1_rep	mRNA	10349511	10355473	.	-	.	ID=Os06t0286351-02;Name=Os06t0286351-02;Locus_id=Os06g0286351;Note=Similar to AF-4 domain containing protein-like protein.;Transcript_evidence=AK102409 (DDBJ%2C Best hit);ORF_evidence=NP_199580.3 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033092N06;TENOR=Os06t0286351-02
Chr06	irgsp1_rep	five_prime_UTR	10355472	10355473	.	-	.	Parent=Os06t0286351-02
Chr06	irgsp1_rep	CDS	10355271	10355471	.	-	0	Parent=Os06t0286351-02
Chr06	irgsp1_rep	CDS	10354974	10355155	.	-	0	Parent=Os06t0286351-02
Chr06	irgsp1_rep	CDS	10354096	10354222	.	-	1	Parent=Os06t0286351-02
Chr06	irgsp1_rep	CDS	10353736	10353954	.	-	0	Parent=Os06t0286351-02
Chr06	irgsp1_rep	CDS	10353343	10353559	.	-	0	Parent=Os06t0286351-02
Chr06	irgsp1_rep	CDS	10353112	10353257	.	-	2	Parent=Os06t0286351-02
Chr06	irgsp1_rep	CDS	10352856	10353001	.	-	0	Parent=Os06t0286351-02
Chr06	irgsp1_rep	CDS	10352362	10352511	.	-	1	Parent=Os06t0286351-02
Chr06	irgsp1_rep	CDS	10352225	10352273	.	-	1	Parent=Os06t0286351-02
Chr06	irgsp1_rep	CDS	10351954	10352142	.	-	0	Parent=Os06t0286351-02
Chr06	irgsp1_rep	CDS	10351422	10351604	.	-	0	Parent=Os06t0286351-02
Chr06	irgsp1_rep	CDS	10350962	10351113	.	-	0	Parent=Os06t0286351-02
Chr06	irgsp1_rep	CDS	10350740	10350866	.	-	1	Parent=Os06t0286351-02
Chr06	irgsp1_rep	CDS	10350502	10350654	.	-	0	Parent=Os06t0286351-02
Chr06	irgsp1_rep	CDS	10350355	10350420	.	-	0	Parent=Os06t0286351-02
Chr06	irgsp1_rep	CDS	10350128	10350264	.	-	0	Parent=Os06t0286351-02
Chr06	irgsp1_rep	CDS	10349913	10350030	.	-	1	Parent=Os06t0286351-02
Chr06	irgsp1_rep	CDS	10349678	10349812	.	-	0	Parent=Os06t0286351-02
Chr06	irgsp1_rep	CDS	10349511	10349583	.	-	0	Parent=Os06t0286351-02
Chr06	irgsp1_rep	mRNA	10344190	10352513	.	-	.	ID=Os06t0286351-03;Name=Os06t0286351-03;Locus_id=Os06g0286351;Note=Similar to AF-4 domain containing protein-like protein.;Transcript_evidence=AK068222 (DDBJ%2C Best hit);ORF_evidence=A1XFD1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013138E23;TENOR=Os06t0286351-03;KEGG=Os06t0286351-03
Chr06	irgsp1_rep	five_prime_UTR	10352400	10352513	.	-	.	Parent=Os06t0286351-03
Chr06	irgsp1_rep	CDS	10352362	10352399	.	-	0	Parent=Os06t0286351-03
Chr06	irgsp1_rep	CDS	10352225	10352273	.	-	1	Parent=Os06t0286351-03
Chr06	irgsp1_rep	CDS	10351954	10352142	.	-	0	Parent=Os06t0286351-03
Chr06	irgsp1_rep	CDS	10351422	10351604	.	-	0	Parent=Os06t0286351-03
Chr06	irgsp1_rep	CDS	10350962	10351113	.	-	0	Parent=Os06t0286351-03
Chr06	irgsp1_rep	CDS	10350740	10350866	.	-	1	Parent=Os06t0286351-03
Chr06	irgsp1_rep	CDS	10350502	10350654	.	-	0	Parent=Os06t0286351-03
Chr06	irgsp1_rep	CDS	10350355	10350420	.	-	0	Parent=Os06t0286351-03
Chr06	irgsp1_rep	CDS	10350128	10350264	.	-	0	Parent=Os06t0286351-03
Chr06	irgsp1_rep	CDS	10349913	10350030	.	-	1	Parent=Os06t0286351-03
Chr06	irgsp1_rep	CDS	10349678	10349812	.	-	0	Parent=Os06t0286351-03
Chr06	irgsp1_rep	CDS	10349384	10349583	.	-	0	Parent=Os06t0286351-03
Chr06	irgsp1_rep	CDS	10348200	10348350	.	-	1	Parent=Os06t0286351-03
Chr06	irgsp1_rep	CDS	10347943	10348086	.	-	0	Parent=Os06t0286351-03
Chr06	irgsp1_rep	CDS	10347724	10347804	.	-	0	Parent=Os06t0286351-03
Chr06	irgsp1_rep	CDS	10347082	10347636	.	-	0	Parent=Os06t0286351-03
Chr06	irgsp1_rep	CDS	10346890	10346991	.	-	0	Parent=Os06t0286351-03
Chr06	irgsp1_rep	CDS	10346639	10346712	.	-	0	Parent=Os06t0286351-03
Chr06	irgsp1_rep	CDS	10346503	10346554	.	-	1	Parent=Os06t0286351-03
Chr06	irgsp1_rep	CDS	10345811	10345897	.	-	0	Parent=Os06t0286351-03
Chr06	irgsp1_rep	CDS	10345684	10345721	.	-	0	Parent=Os06t0286351-03
Chr06	irgsp1_rep	CDS	10345290	10345358	.	-	1	Parent=Os06t0286351-03
Chr06	irgsp1_rep	CDS	10345060	10345223	.	-	1	Parent=Os06t0286351-03
Chr06	irgsp1_rep	CDS	10344819	10344958	.	-	2	Parent=Os06t0286351-03
Chr06	irgsp1_rep	CDS	10344692	10344727	.	-	0	Parent=Os06t0286351-03
Chr06	irgsp1_rep	three_prime_UTR	10344190	10344691	.	-	.	Parent=Os06t0286351-03
Chr06	irgsp1_rep	mRNA	10347364	10351996	.	-	.	ID=Os06t0286351-04;Name=Os06t0286351-04;Locus_id=Os06g0286351;Note=Similar to AF-4 domain containing protein-like protein.;Transcript_evidence=AK068425 (DDBJ%2C Best hit);ORF_evidence=A1XFD1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013153L03;TENOR=Os06t0286351-04;KEGG=Os06t0286351-04
Chr06	irgsp1_rep	five_prime_UTR	10351996	10351996	.	-	.	Parent=Os06t0286351-04
Chr06	irgsp1_rep	CDS	10351954	10351995	.	-	0	Parent=Os06t0286351-04
Chr06	irgsp1_rep	CDS	10351422	10351604	.	-	0	Parent=Os06t0286351-04
Chr06	irgsp1_rep	CDS	10350962	10351113	.	-	0	Parent=Os06t0286351-04
Chr06	irgsp1_rep	CDS	10350740	10350866	.	-	1	Parent=Os06t0286351-04
Chr06	irgsp1_rep	CDS	10350502	10350654	.	-	0	Parent=Os06t0286351-04
Chr06	irgsp1_rep	CDS	10350355	10350420	.	-	0	Parent=Os06t0286351-04
Chr06	irgsp1_rep	CDS	10350128	10350264	.	-	0	Parent=Os06t0286351-04
Chr06	irgsp1_rep	CDS	10349913	10350030	.	-	1	Parent=Os06t0286351-04
Chr06	irgsp1_rep	CDS	10349678	10349812	.	-	0	Parent=Os06t0286351-04
Chr06	irgsp1_rep	CDS	10349384	10349583	.	-	0	Parent=Os06t0286351-04
Chr06	irgsp1_rep	CDS	10348200	10348350	.	-	1	Parent=Os06t0286351-04
Chr06	irgsp1_rep	CDS	10347943	10348086	.	-	0	Parent=Os06t0286351-04
Chr06	irgsp1_rep	CDS	10347724	10347804	.	-	0	Parent=Os06t0286351-04
Chr06	irgsp1_rep	CDS	10347364	10347636	.	-	0	Parent=Os06t0286351-04
Chr06	irgsp1_rep	mRNA	10374132	10375321	.	+	.	ID=Os06t0286375-00;Name=Os06t0286375-00;Locus_id=Os06g0286375;Note=Similar to Nitrate-induced NOI protein-like protein.;Transcript_evidence=ab initio prediction;ORF_evidence=E2CU61 (UniProt);InterPro=Pathogenic type III effector avirulence factor Avr cleavage site (IPR008700);TENOR=Os06t0286375-00;KEGG=Os06t0286375-00
Chr06	irgsp1_rep	CDS	10374132	10374212	.	+	0	Parent=Os06t0286375-00
Chr06	irgsp1_rep	CDS	10374253	10374444	.	+	0	Parent=Os06t0286375-00
Chr06	irgsp1_rep	CDS	10375103	10375321	.	+	0	Parent=Os06t0286375-00
Chr06	irgsp1_rep	mRNA	10374591	10374893	.	+	.	ID=Os06t0286400-01;Name=Os06t0286400-01;Locus_id=Os06g0286400;Note=Non-protein coding transcript.;Transcript_evidence=AK059360 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-026-D12;TENOR=Os06t0286400-01
Chr06	irgsp1_rep	exon	10374591	10374893	.	+	.	Parent=Os06t0286400-01
Chr06	irgsp1_rep	mRNA	10375846	10380216	.	+	.	ID=Os06t0286500-01;Name=Os06t0286500-01;Locus_id=Os06g0286500;Oryzabase Gene Symbol Synonym(s)=Nbs1-Pi9%2C Nbs1-Pi2%2C Nbs1-NPB;Note=Similar to NBS-LRR disease resistance protein homologue.;Transcript_evidence=AK121397 (DDBJ%2C Best hit);ORF_evidence=A1XFD4 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J023131G18;Oryzabase=16101;TENOR=Os06t0286500-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	10375846	10375888	.	+	.	Parent=Os06t0286500-01
Chr06	irgsp1_rep	CDS	10375889	10376007	.	+	0	Parent=Os06t0286500-01
Chr06	irgsp1_rep	CDS	10377198	10380003	.	+	1	Parent=Os06t0286500-01
Chr06	irgsp1_rep	three_prime_UTR	10380004	10380216	.	+	.	Parent=Os06t0286500-01
Chr06	irgsp1_rep	mRNA	10387793	10390465	.	+	.	ID=Os06t0286700-00;Name=Os06t0286700-00;Locus_id=Os06g0286700;CGSNL Gene Symbol=PIZ%2C PIZT;CGSNL Gene Name=PYRICULARIA ORYZAE RESISTANCE Z%2C PYRICULARIA ORYZAE RESISTANCE ZT;Oryzabase Gene Symbol Synonym(s)=Piz%2C Piz (Pi2%2C Pi-z%2C Piz)%2C Pi-z%2C Pi2%2C Pi-2%2C Piz-t%2C Pi-zt%2C Pi-z(t)%2C Pi2/Pizt%2C Pizt%2C Pi9%2C OsPiz-t;Oryzabase Gene Name Synonym(s)=Pyricularia oryzae resistance-z%2C Magnaporthe grisea resistance-z%2C Blast resistance z%2C Pyricularia oryzae resistance-2%2C Magnaporthe grisea resistance-2%2C Blast resistance 2%2C Pyricularia oryzae resistance zt%2C Magnaporthe grisea resistance zt%2C Blast resistance zt;Note=Similar to Piz-t.;Transcript_evidence=ab initio prediction;ORF_evidence=Q0H213 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);Oryzabase=6393,761;TENOR=Os06t0286700-00
Chr06	irgsp1_rep	CDS	10387793	10390465	.	+	0	Parent=Os06t0286700-00
Chr06	irgsp1_rep	mRNA	10399384	10401359	.	+	.	ID=Os06t0286900-01;Name=Os06t0286900-01;Locus_id=Os06g0286900;Note=Molybdopterin oxidoreductase%2C prokaryotic%2C conserved site domain containing protein.;Transcript_evidence=AK288646 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090056J01;TENOR=Os06t0286900-01;KEGG=Os06t0286900-01
Chr06	irgsp1_rep	five_prime_UTR	10399384	10399570	.	+	.	Parent=Os06t0286900-01
Chr06	irgsp1_rep	CDS	10399571	10399792	.	+	0	Parent=Os06t0286900-01
Chr06	irgsp1_rep	three_prime_UTR	10399793	10401359	.	+	.	Parent=Os06t0286900-01
Chr06	irgsp1_rep	mRNA	10408235	10410280	.	+	.	ID=Os06t0287000-00;Name=Os06t0287000-00;Locus_id=Os06g0287000;Oryzabase Gene Name Synonym(s)=Pi2/9 homolog;Note=Similar to NBS-LRR type R protein%2C Nbs4-Pi.;Transcript_evidence=ab initio prediction;ORF_evidence=A1XFD6 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);Oryzabase=16262;TENOR=Os06t0287000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	10408235	10410280	.	+	0	Parent=Os06t0287000-00
Chr06	irgsp1_rep	mRNA	10425155	10427557	.	+	.	ID=Os06t0287200-00;Name=Os06t0287200-00;Locus_id=Os06g0287200;Oryzabase Gene Name Synonym(s)=Pi2/9 homolog;Note=Similar to NBS-LRR type R protein Nbs7-75.;Transcript_evidence=ab initio prediction;ORF_evidence=Q0ZHC7 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);Oryzabase=16260;TENOR=Os06t0287200-00
Chr06	irgsp1_rep	CDS	10425155	10427557	.	+	0	Parent=Os06t0287200-00
Chr06	irgsp1_rep	mRNA	10435819	10441907	.	+	.	ID=Os06t0287500-01;Name=Os06t0287500-01;Locus_id=Os06g0287500;RAP-DB Gene Symbol Synonym(s)=NBS2%2C Pid4;Oryzabase Gene Name Synonym(s)=Pi2/9 homolog;Note=CC-NBS-LRR protein%2C Blast resistance (Nipponbare: susceptible);Transcript_evidence=AK070885;ORF_evidence=Q5VN64;GO=Molecular Function: ADP binding (GO:0043531);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),Virus X resistance protein-like%2C coiled-coil domain (IPR038005),NB-ARC (IPR002182);NIAS_FLcDNA=J023064A19;Manual Curation=January 11%2C 2019;Literature_PMID=30606471;Oryzabase=16258;TENOR=Os06t0287500-01;Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737)
Chr06	irgsp1_rep	five_prime_UTR	10435819	10436339	.	+	.	Parent=Os06t0287500-01
Chr06	irgsp1_rep	five_prime_UTR	10436472	10436584	.	+	.	Parent=Os06t0287500-01
Chr06	irgsp1_rep	five_prime_UTR	10437191	10437322	.	+	.	Parent=Os06t0287500-01
Chr06	irgsp1_rep	five_prime_UTR	10437590	10437597	.	+	.	Parent=Os06t0287500-01
Chr06	irgsp1_rep	CDS	10437598	10438518	.	+	0	Parent=Os06t0287500-01
Chr06	irgsp1_rep	three_prime_UTR	10438519	10440439	.	+	.	Parent=Os06t0287500-01
Chr06	irgsp1_rep	three_prime_UTR	10440546	10440684	.	+	.	Parent=Os06t0287500-01
Chr06	irgsp1_rep	three_prime_UTR	10441419	10441907	.	+	.	Parent=Os06t0287500-01
Chr06	irgsp1_rep	mRNA	10435853	10438870	.	+	.	ID=Os06t0287500-02;Name=Os06t0287500-02;Locus_id=Os06g0287500;Oryzabase Gene Name Synonym(s)=Pi2/9 homolog;Note=Similar to NBS-LRR type R protein Nbs7-75.;Transcript_evidence=AK071029 (DDBJ%2C Best hit);ORF_evidence=Q0ZHC7 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J023075E16;Oryzabase=16258;TENOR=Os06t0287500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	10435853	10436339	.	+	.	Parent=Os06t0287500-02
Chr06	irgsp1_rep	five_prime_UTR	10436472	10436584	.	+	.	Parent=Os06t0287500-02
Chr06	irgsp1_rep	five_prime_UTR	10437191	10437309	.	+	.	Parent=Os06t0287500-02
Chr06	irgsp1_rep	CDS	10437310	10437322	.	+	0	Parent=Os06t0287500-02
Chr06	irgsp1_rep	CDS	10437590	10438518	.	+	2	Parent=Os06t0287500-02
Chr06	irgsp1_rep	three_prime_UTR	10438519	10438870	.	+	.	Parent=Os06t0287500-02
Chr06	irgsp1_rep	mRNA	10445137	10450881	.	+	.	ID=Os06t0287700-01;Name=Os06t0287700-01;Locus_id=Os06g0287700;Oryzabase Gene Name Synonym(s)=Pi2/9 homolog;Note=Similar to NBS-LRR disease resistance protein homologue (Fragment).;Transcript_evidence=AK067966 (DDBJ%2C Best hit);ORF_evidence=Q0ZHC6 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013122I17;Oryzabase=16259;Expression=AK067966;TENOR=Os06t0287700-01;KEGG=Os06t0287700-01
Chr06	irgsp1_rep	five_prime_UTR	10445137	10445243	.	+	.	Parent=Os06t0287700-01
Chr06	irgsp1_rep	five_prime_UTR	10445966	10446050	.	+	.	Parent=Os06t0287700-01
Chr06	irgsp1_rep	CDS	10446051	10446166	.	+	0	Parent=Os06t0287700-01
Chr06	irgsp1_rep	CDS	10447171	10447927	.	+	1	Parent=Os06t0287700-01
Chr06	irgsp1_rep	three_prime_UTR	10447928	10450033	.	+	.	Parent=Os06t0287700-01
Chr06	irgsp1_rep	three_prime_UTR	10450164	10450881	.	+	.	Parent=Os06t0287700-01
Chr06	irgsp1_rep	mRNA	10445137	10446656	.	+	.	ID=Os06t0287700-02;Name=Os06t0287700-02;Locus_id=Os06g0287700;Oryzabase Gene Name Synonym(s)=Pi2/9 homolog;Note=Non-protein coding transcript.;Transcript_evidence=AK066538 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013069N08;Oryzabase=16259;TENOR=Os06t0287700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	exon	10445137	10445243	.	+	.	Parent=Os06t0287700-02
Chr06	irgsp1_rep	exon	10445966	10446656	.	+	.	Parent=Os06t0287700-02
Chr06	irgsp1_rep	mRNA	10450781	10451095	.	+	.	ID=Os06t0287700-03;Name=Os06t0287700-03;Locus_id=Os06g0287700;Oryzabase Gene Name Synonym(s)=Pi2/9 homolog;Note=Similar to Nbs-lrr disease resistance protein (Fragment).;Transcript_evidence=AK059389 (DDBJ%2C Best hit);ORF_evidence=A6N159 (UniProt);NIAS_FLcDNA=001-026-H05;Oryzabase=16259;Expression=AK059389;TENOR=Os06t0287700-03;KEGG=Os06t0287700-03
Chr06	irgsp1_rep	five_prime_UTR	10450781	10450834	.	+	.	Parent=Os06t0287700-03
Chr06	irgsp1_rep	CDS	10450835	10450987	.	+	0	Parent=Os06t0287700-03
Chr06	irgsp1_rep	three_prime_UTR	10450988	10451095	.	+	.	Parent=Os06t0287700-03
Chr06	irgsp1_rep	mRNA	10466213	10467311	.	+	.	ID=Os06t0288000-00;Name=Os06t0288000-00;Locus_id=Os06g0288000;Note=Non-protein coding transcript.;Transcript_evidence=CT835691 (DDBJ%2C Secondary hit);ORF_evidence=NONE;TENOR=Os06t0288000-00
Chr06	irgsp1_rep	exon	10466213	10466360	.	+	.	Parent=Os06t0288000-00
Chr06	irgsp1_rep	exon	10466614	10467083	.	+	.	Parent=Os06t0288000-00
Chr06	irgsp1_rep	exon	10467250	10467311	.	+	.	Parent=Os06t0288000-00
Chr06	irgsp1_rep	mRNA	10469382	10471225	.	-	.	ID=Os06t0288100-01;Name=Os06t0288100-01;Locus_id=Os06g0288100;Oryzabase Gene Symbol Synonym(s)=PK;Oryzabase Gene Name Synonym(s)=protein kinase;Note=Similar to Receptor-like protein kinase.;Transcript_evidence=AK068504 (DDBJ%2C Best hit);ORF_evidence=A1XFD8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013151H24;Oryzabase=16112;Expression=AK068504;TENOR=Os06t0288100-01;KEGG=Os06t0288100-01
Chr06	irgsp1_rep	five_prime_UTR	10471202	10471225	.	-	.	Parent=Os06t0288100-01
Chr06	irgsp1_rep	CDS	10469672	10471201	.	-	0	Parent=Os06t0288100-01
Chr06	irgsp1_rep	three_prime_UTR	10469382	10469671	.	-	.	Parent=Os06t0288100-01
Chr06	irgsp1_rep	mRNA	10479285	10480865	.	+	.	ID=Os06t0288300-01;Name=Os06t0288300-01;Locus_id=Os06g0288300;RAP-DB Gene Symbol Synonym(s)=OsCGT%2C CGT;RAP-DB Gene Name Synonym(s)=C-glycosyltransferase;Oryzabase Gene Symbol Synonym(s)=OsCGT%2C CGT;Oryzabase Gene Name Synonym(s)=C-glycosyltransferase%2C UDP-glycosyltransferase 708A6;Note=C-glucosyltransferase%2C Flavone-C-glycoside synthesis;Transcript_evidence=FM179712 (Genbank),AK071127 (Genbank);ORF_evidence=C3W7B0 (UniProt),Q5VMI0 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J023077L14;Manual Curation=October 20%2C 2010;Literature_PMID=20647377,19411659;Oryzabase=15791;Expression=AK071127;TENOR=Os06t0288300-01;KEGG=Os06t0288300-01 (EC:2.4.1.218)
Chr06	irgsp1_rep	five_prime_UTR	10479285	10479355	.	+	.	Parent=Os06t0288300-01
Chr06	irgsp1_rep	CDS	10479356	10480771	.	+	0	Parent=Os06t0288300-01
Chr06	irgsp1_rep	three_prime_UTR	10480772	10480865	.	+	.	Parent=Os06t0288300-01
Chr06	irgsp1_rep	mRNA	10484961	10485489	.	-	.	ID=Os06t0288400-01;Name=Os06t0288400-01;Locus_id=Os06g0288400;Note=Hypothetical conserved gene.;Transcript_evidence=AK062650 (DDBJ%2C Best hit);ORF_evidence=B8B0N7 (UniProt);NIAS_FLcDNA=001-105-E06;Expression=AK062650;TENOR=Os06t0288400-01;KEGG=Os06t0288400-01
Chr06	irgsp1_rep	five_prime_UTR	10485488	10485489	.	-	.	Parent=Os06t0288400-01
Chr06	irgsp1_rep	CDS	10485200	10485487	.	-	0	Parent=Os06t0288400-01
Chr06	irgsp1_rep	three_prime_UTR	10484961	10485199	.	-	.	Parent=Os06t0288400-01
Chr06	irgsp1_rep	mRNA	10482499	10485471	.	-	.	ID=Os06t0288400-02;Name=Os06t0288400-02;Locus_id=Os06g0288400;Note=Conserved hypothetical protein.;Transcript_evidence=AK099679 (DDBJ%2C Best hit);ORF_evidence=B8B0N7 (UniProt);NIAS_FLcDNA=J013070O18;TENOR=Os06t0288400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	10485470	10485471	.	-	.	Parent=Os06t0288400-02
Chr06	irgsp1_rep	CDS	10485200	10485469	.	-	0	Parent=Os06t0288400-02
Chr06	irgsp1_rep	three_prime_UTR	10484491	10485199	.	-	.	Parent=Os06t0288400-02
Chr06	irgsp1_rep	three_prime_UTR	10482499	10484371	.	-	.	Parent=Os06t0288400-02
Chr06	irgsp1_rep	mRNA	10553309	10555041	.	+	.	ID=Os06t0289200-01;Name=Os06t0289200-01;Locus_id=Os06g0289200;Oryzabase Gene Symbol Synonym(s)=UGT;Oryzabase Gene Name Synonym(s)=flavone C-pentosyltransferase;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK106250 (DDBJ%2C Best hit);ORF_evidence=A1XFE0 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=002-100-E02;Oryzabase=18245;Expression=AK106250;TENOR=Os06t0289200-01;KEGG=Os06t0289200-01
Chr06	irgsp1_rep	five_prime_UTR	10553309	10553383	.	+	.	Parent=Os06t0289200-01
Chr06	irgsp1_rep	CDS	10553384	10554841	.	+	0	Parent=Os06t0289200-01
Chr06	irgsp1_rep	three_prime_UTR	10554842	10555041	.	+	.	Parent=Os06t0289200-01
Chr06	irgsp1_rep	mRNA	10562431	10563819	.	-	.	ID=Os06t0289300-00;Name=Os06t0289300-00;Locus_id=Os06g0289300;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A3BAU2 (UniProt);TENOR=Os06t0289300-00
Chr06	irgsp1_rep	CDS	10563356	10563819	.	-	0	Parent=Os06t0289300-00
Chr06	irgsp1_rep	CDS	10562431	10562446	.	-	1	Parent=Os06t0289300-00
Chr06	irgsp1_rep	mRNA	10588158	10589935	.	-	.	ID=Os06t0289900-01;Name=Os06t0289900-01;Locus_id=Os06g0289900;Oryzabase Gene Symbol Synonym(s)=UGT;Oryzabase Gene Name Synonym(s)=C-pentosyl flavone pentosyltransferase;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK241052 (DDBJ%2C Best hit);ORF_evidence=NP_001148936.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J065062J21;Oryzabase=18246;TENOR=Os06t0289900-01;KEGG=Os06t0289900-01
Chr06	irgsp1_rep	five_prime_UTR	10589878	10589935	.	-	.	Parent=Os06t0289900-01
Chr06	irgsp1_rep	CDS	10588432	10589877	.	-	0	Parent=Os06t0289900-01
Chr06	irgsp1_rep	three_prime_UTR	10588158	10588431	.	-	.	Parent=Os06t0289900-01
Chr06	irgsp1_rep	mRNA	10649500	10650009	.	-	.	ID=Os06t0290701-00;Name=Os06t0290701-00;Locus_id=Os06g0290701;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os06t0290701-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	10649500	10650009	.	-	0	Parent=Os06t0290701-00
Chr06	irgsp1_rep	mRNA	10660648	10660954	.	+	.	ID=Os06t0291100-00;Name=Os06t0291100-00;Locus_id=Os06g0291100;Note=Non-protein coding transcript.;Transcript_evidence=CT836302 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os06t0291100-00
Chr06	irgsp1_rep	exon	10660648	10660954	.	+	.	Parent=Os06t0291100-00
Chr06	irgsp1_rep	mRNA	10685619	10688696	.	+	.	ID=Os06t0291500-01;Name=Os06t0291500-01;Locus_id=Os06g0291500;Note=Conserved hypothetical protein.;Transcript_evidence=AK068835 (DDBJ%2C Best hit);ORF_evidence=A2YBX3 (UniProt);NIAS_FLcDNA=J013158G20;Expression=AK068835;TENOR=Os06t0291500-01;KEGG=Os06t0291500-01
Chr06	irgsp1_rep	five_prime_UTR	10685619	10685665	.	+	.	Parent=Os06t0291500-01
Chr06	irgsp1_rep	CDS	10685666	10686011	.	+	0	Parent=Os06t0291500-01
Chr06	irgsp1_rep	CDS	10686375	10686607	.	+	2	Parent=Os06t0291500-01
Chr06	irgsp1_rep	three_prime_UTR	10686608	10688696	.	+	.	Parent=Os06t0291500-01
Chr06	irgsp1_rep	mRNA	10690711	10694167	.	-	.	ID=Os06t0291600-01;Name=Os06t0291600-01;Locus_id=Os06g0291600;Oryzabase Gene Symbol Synonym(s)=G11A;Note=Similar to Protein kinase G11A (EC 2.7.1.-) (Fragment).;Transcript_evidence=AK100261 (DDBJ%2C Best hit);ORF_evidence=A2YBX5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023063D14;Oryzabase=13739;Expression=AK100261;TENOR=Os06t0291600-01;KEGG=Os06t0291600-01
Chr06	irgsp1_rep	five_prime_UTR	10694066	10694167	.	-	.	Parent=Os06t0291600-01
Chr06	irgsp1_rep	five_prime_UTR	10693190	10693291	.	-	.	Parent=Os06t0291600-01
Chr06	irgsp1_rep	CDS	10692297	10693189	.	-	0	Parent=Os06t0291600-01
Chr06	irgsp1_rep	CDS	10690932	10691808	.	-	1	Parent=Os06t0291600-01
Chr06	irgsp1_rep	three_prime_UTR	10690711	10690931	.	-	.	Parent=Os06t0291600-01
Chr06	irgsp1_rep	mRNA	10711028	10714423	.	-	.	ID=Os06t0291800-00;Name=Os06t0291800-00;Locus_id=Os06g0291800;Note=Conserved hypothetical protein.;Transcript_evidence=BT062432 (DDBJ);ORF_evidence=NP_001174730.1 (RefSeq);TENOR=Os06t0291800-00;KEGG=Os06t0291800-00
Chr06	irgsp1_rep	CDS	10711028	10714423	.	-	0	Parent=Os06t0291800-00
Chr06	irgsp1_rep	mRNA	10726696	10729506	.	-	.	ID=Os06t0292100-00;Name=Os06t0292100-00;Locus_id=Os06g0292100;Note=Hypothetical conserved gene.;Transcript_evidence=BT062432 (DDBJ);ORF_evidence=Q5Z577 (UniProt);TENOR=Os06t0292100-00;KEGG=Os06t0292100-00
Chr06	irgsp1_rep	CDS	10726714	10729506	.	-	0	Parent=Os06t0292100-00
Chr06	irgsp1_rep	three_prime_UTR	10726696	10726713	.	-	.	Parent=Os06t0292100-00
Chr06	irgsp1_rep	mRNA	10738455	10741214	.	+	.	ID=Os06t0292301-01;Name=Os06t0292301-01;Locus_id=Os06g0292301;Note=Hypothetical gene.;Transcript_evidence=AK240926 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065040E24;TENOR=Os06t0292301-01;KEGG=Os06t0292301-01
Chr06	irgsp1_rep	five_prime_UTR	10738455	10740302	.	+	.	Parent=Os06t0292301-01
Chr06	irgsp1_rep	CDS	10740303	10740581	.	+	0	Parent=Os06t0292301-01
Chr06	irgsp1_rep	three_prime_UTR	10740582	10741214	.	+	.	Parent=Os06t0292301-01
Chr06	irgsp1_rep	mRNA	10738687	10742348	.	-	.	ID=Os06t0292400-00;Name=Os06t0292400-00;Locus_id=Os06g0292400;Note=Embryogenesis transmembrane protein.;Transcript_evidence=BT062432 (DDBJ);ORF_evidence=NP_001057423.2 (RefSeq);TENOR=Os06t0292400-00;KEGG=Os06t0292400-00
Chr06	irgsp1_rep	CDS	10738692	10742348	.	-	0	Parent=Os06t0292400-00
Chr06	irgsp1_rep	three_prime_UTR	10738687	10738691	.	-	.	Parent=Os06t0292400-00
Chr06	irgsp1_rep	mRNA	10744672	10745214	.	+	.	ID=Os06t0292600-01;Name=Os06t0292600-01;Locus_id=Os06g0292600;Note=Non-protein coding transcript.;Transcript_evidence=AK062856 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-108-A09;TENOR=Os06t0292600-01
Chr06	irgsp1_rep	exon	10744672	10745214	.	+	.	Parent=Os06t0292600-01
Chr06	irgsp1_rep	mRNA	10756337	10757232	.	+	.	ID=Os06t0293000-00;Name=Os06t0293000-00;Locus_id=Os06g0293000;Note=Hypothetical conserved gene.;Transcript_evidence=CT836321 (DDBJ%2C Best hit);ORF_evidence=Q5Z570 (UniProt);TENOR=Os06t0293000-00
Chr06	irgsp1_rep	five_prime_UTR	10756337	10756373	.	+	.	Parent=Os06t0293000-00
Chr06	irgsp1_rep	CDS	10756374	10757232	.	+	0	Parent=Os06t0293000-00
Chr06	irgsp1_rep	mRNA	10756426	10757178	.	-	.	ID=Os06t0293050-00;Name=Os06t0293050-00;Locus_id=Os06g0293050;Note=Hypothetical protein.;Transcript_evidence=FP101342 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0293050-00
Chr06	irgsp1_rep	five_prime_UTR	10757178	10757178	.	-	.	Parent=Os06t0293050-00
Chr06	irgsp1_rep	CDS	10756950	10757177	.	-	0	Parent=Os06t0293050-00
Chr06	irgsp1_rep	CDS	10756426	10756853	.	-	0	Parent=Os06t0293050-00
Chr06	irgsp1_rep	mRNA	10758256	10759995	.	+	.	ID=Os06t0293100-00;Name=Os06t0293100-00;Locus_id=Os06g0293100;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8B0U0 (UniProt);TENOR=Os06t0293100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	10758256	10758564	.	+	0	Parent=Os06t0293100-00
Chr06	irgsp1_rep	CDS	10758829	10759995	.	+	0	Parent=Os06t0293100-00
Chr06	irgsp1_rep	mRNA	10758610	10759892	.	-	.	ID=Os06t0293300-00;Name=Os06t0293300-00;Locus_id=Os06g0293300;Note=Hypothetical protein.;Transcript_evidence=tplb0033h24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0293300-00
Chr06	irgsp1_rep	five_prime_UTR	10759892	10759892	.	-	.	Parent=Os06t0293300-00
Chr06	irgsp1_rep	CDS	10759235	10759891	.	-	0	Parent=Os06t0293300-00
Chr06	irgsp1_rep	three_prime_UTR	10758817	10759234	.	-	.	Parent=Os06t0293300-00
Chr06	irgsp1_rep	three_prime_UTR	10758610	10758743	.	-	.	Parent=Os06t0293300-00
Chr06	irgsp1_rep	mRNA	10780823	10784833	.	-	.	ID=Os06t0293500-01;Name=Os06t0293500-01;Locus_id=Os06g0293500;Note=Conserved hypothetical protein.;Transcript_evidence=AK110449 (DDBJ%2C Best hit);ORF_evidence=A2X425 (UniProt);NIAS_FLcDNA=002-166-E04;Expression=AK110449;TENOR=Os06t0293500-01;KEGG=Os06t0293500-01
Chr06	irgsp1_rep	five_prime_UTR	10784785	10784833	.	-	.	Parent=Os06t0293500-01
Chr06	irgsp1_rep	CDS	10783736	10784784	.	-	0	Parent=Os06t0293500-01
Chr06	irgsp1_rep	CDS	10781039	10782560	.	-	1	Parent=Os06t0293500-01
Chr06	irgsp1_rep	three_prime_UTR	10780823	10781038	.	-	.	Parent=Os06t0293500-01
Chr06	irgsp1_rep	mRNA	10781688	10784185	.	+	.	ID=Os06t0293583-00;Name=Os06t0293583-00;Locus_id=Os06g0293583;Note=Hypothetical protein.;Transcript_evidence=tplb0033h24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0293583-00
Chr06	irgsp1_rep	five_prime_UTR	10781688	10781895	.	+	.	Parent=Os06t0293583-00
Chr06	irgsp1_rep	CDS	10781896	10782162	.	+	0	Parent=Os06t0293583-00
Chr06	irgsp1_rep	three_prime_UTR	10782163	10782590	.	+	.	Parent=Os06t0293583-00
Chr06	irgsp1_rep	three_prime_UTR	10783807	10784185	.	+	.	Parent=Os06t0293583-00
Chr06	irgsp1_rep	mRNA	10806442	10809643	.	-	.	ID=Os06t0294000-01;Name=Os06t0294000-01;Locus_id=Os06g0294000;Note=Conserved hypothetical protein.;Transcript_evidence=AK067472 (DDBJ%2C Best hit);ORF_evidence=A2X427 (UniProt);NIAS_FLcDNA=J013105J22;Expression=AK067472;TENOR=Os06t0294000-01;KEGG=Os06t0294000-01
Chr06	irgsp1_rep	five_prime_UTR	10809607	10809643	.	-	.	Parent=Os06t0294000-01
Chr06	irgsp1_rep	CDS	10808507	10809606	.	-	0	Parent=Os06t0294000-01
Chr06	irgsp1_rep	CDS	10806770	10808426	.	-	1	Parent=Os06t0294000-01
Chr06	irgsp1_rep	three_prime_UTR	10806442	10806769	.	-	.	Parent=Os06t0294000-01
Chr06	irgsp1_rep	mRNA	10809172	10813775	.	+	.	ID=Os06t0294100-00;Name=Os06t0294100-00;Locus_id=Os06g0294100;Note=Hypothetical protein.;Transcript_evidence=FP101342 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0294100-00
Chr06	irgsp1_rep	five_prime_UTR	10809172	10809411	.	+	.	Parent=Os06t0294100-00
Chr06	irgsp1_rep	CDS	10809412	10809519	.	+	0	Parent=Os06t0294100-00
Chr06	irgsp1_rep	CDS	10813341	10813571	.	+	0	Parent=Os06t0294100-00
Chr06	irgsp1_rep	three_prime_UTR	10813572	10813775	.	+	.	Parent=Os06t0294100-00
Chr06	irgsp1_rep	mRNA	10813016	10816111	.	-	.	ID=Os06t0294200-01;Name=Os06t0294200-01;Locus_id=Os06g0294200;Note=Conserved hypothetical protein.;Transcript_evidence=AK119403 (DDBJ%2C Best hit);ORF_evidence=A2X425 (UniProt);NIAS_FLcDNA=001-132-E08;Expression=AK119403;TENOR=Os06t0294200-01;KEGG=Os06t0294200-01
Chr06	irgsp1_rep	five_prime_UTR	10815983	10816111	.	-	.	Parent=Os06t0294200-01
Chr06	irgsp1_rep	CDS	10814955	10815982	.	-	0	Parent=Os06t0294200-01
Chr06	irgsp1_rep	CDS	10813248	10814754	.	-	1	Parent=Os06t0294200-01
Chr06	irgsp1_rep	three_prime_UTR	10813016	10813247	.	-	.	Parent=Os06t0294200-01
Chr06	irgsp1_rep	mRNA	10813935	10815481	.	+	.	ID=Os06t0294300-00;Name=Os06t0294300-00;Locus_id=Os06g0294300;Note=Hypothetical protein.;Transcript_evidence=tplb0033h24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0294300-00
Chr06	irgsp1_rep	five_prime_UTR	10813935	10814741	.	+	.	Parent=Os06t0294300-00
Chr06	irgsp1_rep	CDS	10814742	10814807	.	+	0	Parent=Os06t0294300-00
Chr06	irgsp1_rep	CDS	10815083	10815481	.	+	0	Parent=Os06t0294300-00
Chr06	irgsp1_rep	mRNA	10832206	10834565	.	-	.	ID=Os06t0294400-00;Name=Os06t0294400-00;Locus_id=Os06g0294400;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5ZA79 (UniProt);TENOR=Os06t0294400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	10834119	10834565	.	-	0	Parent=Os06t0294400-00
Chr06	irgsp1_rep	CDS	10833447	10834108	.	-	0	Parent=Os06t0294400-00
Chr06	irgsp1_rep	CDS	10832635	10833344	.	-	1	Parent=Os06t0294400-00
Chr06	irgsp1_rep	CDS	10832206	10832318	.	-	2	Parent=Os06t0294400-00
Chr06	irgsp1_rep	mRNA	10837402	10839428	.	-	.	ID=Os06t0294501-01;Name=Os06t0294501-01;Locus_id=Os06g0294501;Note=Non-protein coding transcript.;Transcript_evidence=AK288636 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090055M17;TENOR=Os06t0294501-01
Chr06	irgsp1_rep	exon	10837402	10839428	.	-	.	Parent=Os06t0294501-01
Chr06	irgsp1_rep	mRNA	10844016	10845981	.	-	.	ID=Os06t0294600-02;Name=Os06t0294600-02;Locus_id=Os06g0294600;Note=CytoChrome P450 family protein.;Transcript_evidence=AK059089 (DDBJ%2C Best hit),AK058424 (DDBJ%2C Best hit);ORF_evidence=Q10P24 (UniProt);NIAS_FLcDNA=001-022-B08,001-015-D12;Expression=AK059089;TENOR=Os06t0294600-02;KEGG=Os06t0294600-02 (EC:1.14.99.9)
Chr06	irgsp1_rep	five_prime_UTR	10845924	10845981	.	-	.	Parent=Os06t0294600-02
Chr06	irgsp1_rep	CDS	10844973	10845923	.	-	0	Parent=Os06t0294600-02
Chr06	irgsp1_rep	CDS	10844144	10844749	.	-	0	Parent=Os06t0294600-02
Chr06	irgsp1_rep	three_prime_UTR	10844016	10844143	.	-	.	Parent=Os06t0294600-02
Chr06	irgsp1_rep	mRNA	10844200	10845872	.	+	.	ID=Os06t0294775-00;Name=Os06t0294775-00;Locus_id=Os06g0294775;Note=Hypothetical protein.;Transcript_evidence=tplb0033d13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0294775-00
Chr06	irgsp1_rep	five_prime_UTR	10844200	10844740	.	+	.	Parent=Os06t0294775-00
Chr06	irgsp1_rep	five_prime_UTR	10844977	10845324	.	+	.	Parent=Os06t0294775-00
Chr06	irgsp1_rep	CDS	10845325	10845723	.	+	0	Parent=Os06t0294775-00
Chr06	irgsp1_rep	three_prime_UTR	10845724	10845872	.	+	.	Parent=Os06t0294775-00
Chr06	irgsp1_rep	mRNA	10865395	10867828	.	-	.	ID=Os06t0294950-01;Name=Os06t0294950-01;Locus_id=Os06g0294950;Note=Conserved hypothetical protein.;Transcript_evidence=AK241492 (DDBJ%2C Best hit);ORF_evidence=NP_001174731.1 (RefSeq);NIAS_FLcDNA=J065167C16;TENOR=Os06t0294950-01;KEGG=Os06t0294950-01
Chr06	irgsp1_rep	five_prime_UTR	10866876	10867828	.	-	.	Parent=Os06t0294950-01
Chr06	irgsp1_rep	CDS	10866837	10866875	.	-	0	Parent=Os06t0294950-01
Chr06	irgsp1_rep	CDS	10865471	10865638	.	-	0	Parent=Os06t0294950-01
Chr06	irgsp1_rep	three_prime_UTR	10865395	10865470	.	-	.	Parent=Os06t0294950-01
Chr06	irgsp1_rep	mRNA	10871810	10875144	.	-	.	ID=Os06t0295000-01;Name=Os06t0295000-01;Locus_id=Os06g0295000;Note=Hypothetical conserved gene.;Transcript_evidence=AK240760 (DDBJ%2C Best hit);ORF_evidence=Q5ZA71 (UniProt);NIAS_FLcDNA=J053045M08;TENOR=Os06t0295000-01;KEGG=Os06t0295000-01
Chr06	irgsp1_rep	five_prime_UTR	10875084	10875144	.	-	.	Parent=Os06t0295000-01
Chr06	irgsp1_rep	CDS	10874017	10875083	.	-	0	Parent=Os06t0295000-01
Chr06	irgsp1_rep	CDS	10873308	10873484	.	-	1	Parent=Os06t0295000-01
Chr06	irgsp1_rep	CDS	10873050	10873110	.	-	1	Parent=Os06t0295000-01
Chr06	irgsp1_rep	three_prime_UTR	10872372	10873049	.	-	.	Parent=Os06t0295000-01
Chr06	irgsp1_rep	three_prime_UTR	10871810	10872297	.	-	.	Parent=Os06t0295000-01
Chr06	irgsp1_rep	mRNA	10887494	10889511	.	-	.	ID=Os06t0295250-00;Name=Os06t0295250-00;Locus_id=Os06g0295250;Note=Non-protein coding transcript.;Transcript_evidence=tplb0033h24 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os06t0295250-00
Chr06	irgsp1_rep	exon	10889065	10889511	.	-	.	Parent=Os06t0295250-00
Chr06	irgsp1_rep	exon	10887934	10888995	.	-	.	Parent=Os06t0295250-00
Chr06	irgsp1_rep	exon	10887494	10887689	.	-	.	Parent=Os06t0295250-00
Chr06	irgsp1_rep	mRNA	10887746	10889581	.	+	.	ID=Os06t0295300-00;Name=Os06t0295300-00;Locus_id=Os06g0295300;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0007d21 (Wheat FLcDNA);ORF_evidence=Q5ZA66 (UniProt);TENOR=Os06t0295300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	10887746	10889581	.	+	0	Parent=Os06t0295300-00
Chr06	irgsp1_rep	mRNA	10891500	10895664	.	-	.	ID=Os06t0295366-01;Name=Os06t0295366-01;Locus_id=Os06g0295366;Note=Hypothetical gene.;Transcript_evidence=AK288490 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090040J04;TENOR=Os06t0295366-01;KEGG=Os06t0295366-01
Chr06	irgsp1_rep	five_prime_UTR	10894115	10895664	.	-	.	Parent=Os06t0295366-01
Chr06	irgsp1_rep	CDS	10893728	10894114	.	-	0	Parent=Os06t0295366-01
Chr06	irgsp1_rep	three_prime_UTR	10891500	10893727	.	-	.	Parent=Os06t0295366-01
Chr06	irgsp1_rep	mRNA	10898627	10899293	.	-	.	ID=Os06t0295432-00;Name=Os06t0295432-00;Locus_id=Os06g0295432;Note=Non-protein coding transcript.;Transcript_evidence=AK289086 (DDBJ%2C Secondary hit);ORF_evidence=NONE;TENOR=Os06t0295432-00
Chr06	irgsp1_rep	exon	10898627	10899293	.	-	.	Parent=Os06t0295432-00
Chr06	irgsp1_rep	mRNA	10910596	10918688	.	-	.	ID=Os06t0295500-01;Name=Os06t0295500-01;Locus_id=Os06g0295500;Note=Hypothetical gene.;Transcript_evidence=AK066136 (DDBJ%2C Best hit),AK073219 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013053B22,J033009K14;TENOR=Os06t0295500-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	10918685	10918688	.	-	.	Parent=Os06t0295500-01
Chr06	irgsp1_rep	CDS	10918466	10918684	.	-	0	Parent=Os06t0295500-01
Chr06	irgsp1_rep	three_prime_UTR	10918345	10918465	.	-	.	Parent=Os06t0295500-01
Chr06	irgsp1_rep	three_prime_UTR	10913120	10914709	.	-	.	Parent=Os06t0295500-01
Chr06	irgsp1_rep	three_prime_UTR	10912479	10912805	.	-	.	Parent=Os06t0295500-01
Chr06	irgsp1_rep	three_prime_UTR	10912275	10912399	.	-	.	Parent=Os06t0295500-01
Chr06	irgsp1_rep	three_prime_UTR	10910596	10912190	.	-	.	Parent=Os06t0295500-01
Chr06	irgsp1_rep	mRNA	10907283	10918619	.	-	.	ID=Os06t0295500-02;Name=Os06t0295500-02;Locus_id=Os06g0295500;Note=Hypothetical protein.;Transcript_evidence=AK119433 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-133-A08;TENOR=Os06t0295500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	10918345	10918619	.	-	.	Parent=Os06t0295500-02
Chr06	irgsp1_rep	five_prime_UTR	10913350	10914709	.	-	.	Parent=Os06t0295500-02
Chr06	irgsp1_rep	five_prime_UTR	10913120	10913260	.	-	.	Parent=Os06t0295500-02
Chr06	irgsp1_rep	five_prime_UTR	10912479	10912805	.	-	.	Parent=Os06t0295500-02
Chr06	irgsp1_rep	five_prime_UTR	10912275	10912399	.	-	.	Parent=Os06t0295500-02
Chr06	irgsp1_rep	five_prime_UTR	10911910	10912190	.	-	.	Parent=Os06t0295500-02
Chr06	irgsp1_rep	five_prime_UTR	10907801	10907822	.	-	.	Parent=Os06t0295500-02
Chr06	irgsp1_rep	CDS	10907360	10907800	.	-	0	Parent=Os06t0295500-02
Chr06	irgsp1_rep	three_prime_UTR	10907283	10907359	.	-	.	Parent=Os06t0295500-02
Chr06	irgsp1_rep	mRNA	10912193	10914635	.	-	.	ID=Os06t0295500-03;Name=Os06t0295500-03;Locus_id=Os06g0295500;Note=Non-protein coding transcript.;Transcript_evidence=AK101711 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J033060L24;TENOR=Os06t0295500-03
Chr06	irgsp1_rep	exon	10912479	10914635	.	-	.	Parent=Os06t0295500-03
Chr06	irgsp1_rep	exon	10912193	10912399	.	-	.	Parent=Os06t0295500-03
Chr06	irgsp1_rep	mRNA	10919088	10921341	.	+	.	ID=Os06t0295700-01;Name=Os06t0295700-01;Locus_id=Os06g0295700;Note=Conserved hypothetical protein.;Transcript_evidence=AK067494 (DDBJ%2C Best hit);ORF_evidence=A3C6U9 (UniProt);NIAS_FLcDNA=J013111P20;TENOR=Os06t0295700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	10919088	10919250	.	+	.	Parent=Os06t0295700-01
Chr06	irgsp1_rep	five_prime_UTR	10919302	10919435	.	+	.	Parent=Os06t0295700-01
Chr06	irgsp1_rep	five_prime_UTR	10919611	10919637	.	+	.	Parent=Os06t0295700-01
Chr06	irgsp1_rep	CDS	10919638	10919721	.	+	0	Parent=Os06t0295700-01
Chr06	irgsp1_rep	CDS	10919831	10919915	.	+	0	Parent=Os06t0295700-01
Chr06	irgsp1_rep	CDS	10920018	10920079	.	+	2	Parent=Os06t0295700-01
Chr06	irgsp1_rep	three_prime_UTR	10920080	10920081	.	+	.	Parent=Os06t0295700-01
Chr06	irgsp1_rep	three_prime_UTR	10921050	10921341	.	+	.	Parent=Os06t0295700-01
Chr06	irgsp1_rep	mRNA	10926731	10928479	.	+	.	ID=Os06t0295900-01;Name=Os06t0295900-01;Locus_id=Os06g0295900;Note=Hypothetical conserved gene.;Transcript_evidence=AK066750 (DDBJ%2C Best hit);ORF_evidence=A3BAX0 (UniProt);NIAS_FLcDNA=J013074O22;Expression=AK066750;TENOR=Os06t0295900-01;KEGG=Os06t0295900-01
Chr06	irgsp1_rep	five_prime_UTR	10926731	10926731	.	+	.	Parent=Os06t0295900-01
Chr06	irgsp1_rep	CDS	10926732	10927028	.	+	0	Parent=Os06t0295900-01
Chr06	irgsp1_rep	three_prime_UTR	10927029	10928479	.	+	.	Parent=Os06t0295900-01
Chr06	irgsp1_rep	mRNA	10932274	10935216	.	+	.	ID=Os06t0296100-01;Name=Os06t0296100-01;Locus_id=Os06g0296100;RAP-DB Gene Symbol Synonym(s)=OsCTF;RAP-DB Gene Name Synonym(s)=cadmium tolerance factor;CGSNL Gene Symbol=CTF;CGSNL Gene Name=CADMIUM TOLERANCE FACTOR;Oryzabase Gene Symbol Synonym(s)=OsCTF;Oryzabase Gene Name Synonym(s)=cadmium tolerance factor;Note=Resistance to cadmium;Transcript_evidence=ab initio prediction;ORF_evidence=A0A0P0WVH3;InterPro=PGG domain (IPR026961);Manual Curation=April 23%2C 2020;Literature_PMID=31677869;Oryzabase=23433;TENOR=Os06t0296100-00;Subcellular location=endoplasmic reticulum (GO:0005783), plasma membrane (GO:0005886)
Chr06	irgsp1_rep	CDS	10932274	10932763	.	+	0	Parent=Os06t0296100-01
Chr06	irgsp1_rep	CDS	10932904	10933489	.	+	2	Parent=Os06t0296100-01
Chr06	irgsp1_rep	CDS	10933576	10934331	.	+	1	Parent=Os06t0296100-01
Chr06	irgsp1_rep	CDS	10934415	10935216	.	+	1	Parent=Os06t0296100-01
Chr06	irgsp1_rep	mRNA	10952309	10956092	.	-	.	ID=Os06t0296450-00;Name=Os06t0296450-00;Locus_id=Os06g0296450;Note=Hypothetical protein.;Transcript_evidence=EU967040 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0296450-00
Chr06	irgsp1_rep	five_prime_UTR	10955905	10956092	.	-	.	Parent=Os06t0296450-00
Chr06	irgsp1_rep	CDS	10955683	10955904	.	-	0	Parent=Os06t0296450-00
Chr06	irgsp1_rep	three_prime_UTR	10955572	10955682	.	-	.	Parent=Os06t0296450-00
Chr06	irgsp1_rep	three_prime_UTR	10952309	10952549	.	-	.	Parent=Os06t0296450-00
Chr06	irgsp1_rep	mRNA	10957733	10960700	.	-	.	ID=Os06t0296700-01;Name=Os06t0296700-01;Locus_id=Os06g0296700;Note=C-type lectin%2C conserved site domain containing protein.;Transcript_evidence=AK065533 (DDBJ%2C Best hit);ORF_evidence=A2YBZ3 (UniProt);NIAS_FLcDNA=J013034F12;Expression=AK065533;TENOR=Os06t0296700-01;KEGG=Os06t0296700-01
Chr06	irgsp1_rep	five_prime_UTR	10960641	10960700	.	-	.	Parent=Os06t0296700-01
Chr06	irgsp1_rep	CDS	10960145	10960640	.	-	0	Parent=Os06t0296700-01
Chr06	irgsp1_rep	CDS	10959537	10960071	.	-	2	Parent=Os06t0296700-01
Chr06	irgsp1_rep	CDS	10957934	10959458	.	-	1	Parent=Os06t0296700-01
Chr06	irgsp1_rep	three_prime_UTR	10957733	10957933	.	-	.	Parent=Os06t0296700-01
Chr06	irgsp1_rep	mRNA	10958499	10960634	.	+	.	ID=Os06t0296750-00;Name=Os06t0296750-00;Locus_id=Os06g0296750;Note=Hypothetical protein.;Transcript_evidence=tplb0033h24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0296750-00
Chr06	irgsp1_rep	five_prime_UTR	10958499	10958902	.	+	.	Parent=Os06t0296750-00
Chr06	irgsp1_rep	five_prime_UTR	10958983	10959460	.	+	.	Parent=Os06t0296750-00
Chr06	irgsp1_rep	five_prime_UTR	10959594	10960358	.	+	.	Parent=Os06t0296750-00
Chr06	irgsp1_rep	CDS	10960359	10960610	.	+	0	Parent=Os06t0296750-00
Chr06	irgsp1_rep	three_prime_UTR	10960611	10960634	.	+	.	Parent=Os06t0296750-00
Chr06	irgsp1_rep	mRNA	10973966	10976836	.	+	.	ID=Os06t0296900-00;Name=Os06t0296900-00;Locus_id=Os06g0296900;Note=Conserved hypothetical protein.;Transcript_evidence=BT040966 (DDBJ);ORF_evidence=Q5Z6J3 (UniProt);TENOR=Os06t0296900-00
Chr06	irgsp1_rep	CDS	10973966	10976836	.	+	0	Parent=Os06t0296900-00
Chr06	irgsp1_rep	mRNA	10974045	10976091	.	-	.	ID=Os06t0296967-00;Name=Os06t0296967-00;Locus_id=Os06g0296967;Note=Hypothetical protein.;Transcript_evidence=tplb0033h24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0296967-00
Chr06	irgsp1_rep	five_prime_UTR	10975278	10976091	.	-	.	Parent=Os06t0296967-00
Chr06	irgsp1_rep	five_prime_UTR	10974437	10975104	.	-	.	Parent=Os06t0296967-00
Chr06	irgsp1_rep	CDS	10974045	10974436	.	-	0	Parent=Os06t0296967-00
Chr06	irgsp1_rep	mRNA	11014693	11017481	.	-	.	ID=Os06t0297300-00;Name=Os06t0297300-00;Locus_id=Os06g0297300;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0044k17 (Wheat FLcDNA);ORF_evidence=A2YBZ7 (UniProt);TENOR=Os06t0297300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	11014731	11017481	.	-	0	Parent=Os06t0297300-00
Chr06	irgsp1_rep	three_prime_UTR	11014693	11014730	.	-	.	Parent=Os06t0297300-00
Chr06	irgsp1_rep	mRNA	11015385	11016819	.	+	.	ID=Os06t0297350-00;Name=Os06t0297350-00;Locus_id=Os06g0297350;Note=Hypothetical protein.;Transcript_evidence=tplb0033h24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0297350-00
Chr06	irgsp1_rep	five_prime_UTR	11015385	11016285	.	+	.	Parent=Os06t0297350-00
Chr06	irgsp1_rep	five_prime_UTR	11016431	11016579	.	+	.	Parent=Os06t0297350-00
Chr06	irgsp1_rep	CDS	11016580	11016819	.	+	0	Parent=Os06t0297350-00
Chr06	irgsp1_rep	mRNA	11024309	11027884	.	+	.	ID=Os06t0297400-03;Name=Os06t0297400-03;Locus_id=Os06g0297400;Note=Conserved hypothetical protein.;Transcript_evidence=AK071459 (DDBJ%2C Best hit),AK073114 (DDBJ%2C Best hit),AK100158 (DDBJ%2C Best hit);ORF_evidence=B8B0V0 (UniProt);NIAS_FLcDNA=J023089M14,J033020F13,J023019J01;Expression=AK071459;TENOR=Os06t0297400-03;KEGG=Os06t0297400-03
Chr06	irgsp1_rep	five_prime_UTR	11024309	11024414	.	+	.	Parent=Os06t0297400-03
Chr06	irgsp1_rep	CDS	11024415	11027321	.	+	0	Parent=Os06t0297400-03
Chr06	irgsp1_rep	three_prime_UTR	11027322	11027884	.	+	.	Parent=Os06t0297400-03
Chr06	irgsp1_rep	mRNA	11024550	11027137	.	-	.	ID=Os06t0297500-00;Name=Os06t0297500-00;Locus_id=Os06g0297500;Note=Hypothetical protein.;Transcript_evidence=tplb0033h24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0297500-00
Chr06	irgsp1_rep	five_prime_UTR	11026788	11027137	.	-	.	Parent=Os06t0297500-00
Chr06	irgsp1_rep	five_prime_UTR	11025851	11026162	.	-	.	Parent=Os06t0297500-00
Chr06	irgsp1_rep	CDS	11025647	11025850	.	-	0	Parent=Os06t0297500-00
Chr06	irgsp1_rep	CDS	11024631	11024975	.	-	0	Parent=Os06t0297500-00
Chr06	irgsp1_rep	three_prime_UTR	11024550	11024630	.	-	.	Parent=Os06t0297500-00
Chr06	irgsp1_rep	mRNA	11030405	11034085	.	-	.	ID=Os06t0297600-01;Name=Os06t0297600-01;Locus_id=Os06g0297600;Note=Similar to transporter-related.;Transcript_evidence=AK067425 (DDBJ%2C Best hit);ORF_evidence=NP_200406.1 (RefSeq);NIAS_FLcDNA=J013106C17;TENOR=Os06t0297600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	11034007	11034085	.	-	.	Parent=Os06t0297600-01
Chr06	irgsp1_rep	CDS	11033916	11034006	.	-	0	Parent=Os06t0297600-01
Chr06	irgsp1_rep	CDS	11032526	11032677	.	-	2	Parent=Os06t0297600-01
Chr06	irgsp1_rep	CDS	11032227	11032439	.	-	0	Parent=Os06t0297600-01
Chr06	irgsp1_rep	three_prime_UTR	11030405	11032226	.	-	.	Parent=Os06t0297600-01
Chr06	irgsp1_rep	mRNA	11040004	11043309	.	+	.	ID=Os06t0297700-01;Name=Os06t0297700-01;Locus_id=Os06g0297700;Note=Similar to predicted protein.;Transcript_evidence=AK287542 (DDBJ%2C Best hit);ORF_evidence=NP_001057438.1 (RefSeq);InterPro=Uncharacterised protein family UPF0118 (IPR002549);NIAS_FLcDNA=J065012F11;TENOR=Os06t0297700-01;KEGG=Os06t0297700-01
Chr06	irgsp1_rep	five_prime_UTR	11040004	11040139	.	+	.	Parent=Os06t0297700-01
Chr06	irgsp1_rep	CDS	11040140	11040549	.	+	0	Parent=Os06t0297700-01
Chr06	irgsp1_rep	CDS	11040607	11041987	.	+	1	Parent=Os06t0297700-01
Chr06	irgsp1_rep	CDS	11042811	11042909	.	+	0	Parent=Os06t0297700-01
Chr06	irgsp1_rep	three_prime_UTR	11042910	11043309	.	+	.	Parent=Os06t0297700-01
Chr06	irgsp1_rep	mRNA	11046380	11054398	.	+	.	ID=Os06t0297800-01;Name=Os06t0297800-01;Locus_id=Os06g0297800;Note=Similar to protein binding / zinc ion binding.;Transcript_evidence=AK065437 (DDBJ%2C Best hit);ORF_evidence=NP_171836.2 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),GRAM (IPR004182),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=J013023P15;TENOR=Os06t0297800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	11046380	11046824	.	+	.	Parent=Os06t0297800-01
Chr06	irgsp1_rep	CDS	11046825	11047335	.	+	0	Parent=Os06t0297800-01
Chr06	irgsp1_rep	CDS	11048307	11049584	.	+	2	Parent=Os06t0297800-01
Chr06	irgsp1_rep	CDS	11049939	11050121	.	+	2	Parent=Os06t0297800-01
Chr06	irgsp1_rep	CDS	11050213	11050496	.	+	2	Parent=Os06t0297800-01
Chr06	irgsp1_rep	CDS	11050586	11050702	.	+	0	Parent=Os06t0297800-01
Chr06	irgsp1_rep	CDS	11051369	11051631	.	+	0	Parent=Os06t0297800-01
Chr06	irgsp1_rep	CDS	11051800	11051968	.	+	1	Parent=Os06t0297800-01
Chr06	irgsp1_rep	CDS	11052081	11052353	.	+	0	Parent=Os06t0297800-01
Chr06	irgsp1_rep	CDS	11053715	11053909	.	+	0	Parent=Os06t0297800-01
Chr06	irgsp1_rep	three_prime_UTR	11053910	11054398	.	+	.	Parent=Os06t0297800-01
Chr06	irgsp1_rep	mRNA	11050426	11054422	.	+	.	ID=Os06t0297800-02;Name=Os06t0297800-02;Locus_id=Os06g0297800;Note=Similar to predicted protein.;Transcript_evidence=AK060808 (DDBJ%2C Best hit);ORF_evidence=XP_002889456.1 (RefSeq);InterPro=GRAM (IPR004182);NIAS_FLcDNA=001-033-G04;Expression=AK060808;TENOR=Os06t0297800-02;KEGG=Os06t0297800-02
Chr06	irgsp1_rep	five_prime_UTR	11050426	11050427	.	+	.	Parent=Os06t0297800-02
Chr06	irgsp1_rep	CDS	11050428	11050496	.	+	0	Parent=Os06t0297800-02
Chr06	irgsp1_rep	CDS	11050586	11050702	.	+	0	Parent=Os06t0297800-02
Chr06	irgsp1_rep	CDS	11051369	11051631	.	+	0	Parent=Os06t0297800-02
Chr06	irgsp1_rep	CDS	11051800	11051968	.	+	1	Parent=Os06t0297800-02
Chr06	irgsp1_rep	CDS	11052081	11052353	.	+	0	Parent=Os06t0297800-02
Chr06	irgsp1_rep	CDS	11053715	11053909	.	+	0	Parent=Os06t0297800-02
Chr06	irgsp1_rep	three_prime_UTR	11053910	11054422	.	+	.	Parent=Os06t0297800-02
Chr06	irgsp1_rep	mRNA	11058542	11065385	.	-	.	ID=Os06t0298000-00;Name=Os06t0298000-00;Locus_id=Os06g0298000;Note=Conserved hypothetical protein.;Transcript_evidence=BT036774 (DDBJ);ORF_evidence=NP_001174736.1 (RefSeq);TENOR=Os06t0298000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	11065000	11065385	.	-	0	Parent=Os06t0298000-00
Chr06	irgsp1_rep	CDS	11064049	11064226	.	-	1	Parent=Os06t0298000-00
Chr06	irgsp1_rep	three_prime_UTR	11064048	11064048	.	-	.	Parent=Os06t0298000-00
Chr06	irgsp1_rep	three_prime_UTR	11062505	11062591	.	-	.	Parent=Os06t0298000-00
Chr06	irgsp1_rep	three_prime_UTR	11062283	11062425	.	-	.	Parent=Os06t0298000-00
Chr06	irgsp1_rep	three_prime_UTR	11060769	11061350	.	-	.	Parent=Os06t0298000-00
Chr06	irgsp1_rep	three_prime_UTR	11058542	11058832	.	-	.	Parent=Os06t0298000-00
Chr06	irgsp1_rep	mRNA	11068825	11069781	.	-	.	ID=Os06t0298100-01;Name=Os06t0298100-01;Locus_id=Os06g0298100;Note=Conserved hypothetical protein.;Transcript_evidence=AK108594 (DDBJ%2C Best hit);ORF_evidence=A2YC03 (UniProt);NIAS_FLcDNA=002-146-D10;TENOR=Os06t0298100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	11069543	11069781	.	-	.	Parent=Os06t0298100-01
Chr06	irgsp1_rep	CDS	11069153	11069542	.	-	0	Parent=Os06t0298100-01
Chr06	irgsp1_rep	three_prime_UTR	11068825	11069152	.	-	.	Parent=Os06t0298100-01
Chr06	irgsp1_rep	mRNA	11070178	11076691	.	-	.	ID=Os06t0298200-01;Name=Os06t0298200-01;Locus_id=Os06g0298200;Oryzabase Gene Symbol Synonym(s)=OsBBX19%2C BBX19%2C OsM%2C DTH2%2C qDTH-2%2C OsCCT22%2C CCT22;Oryzabase Gene Name Synonym(s)=B-box-containing protein 19%2C Days to heading on Chromosome 2%2C CCT domain-containing gene 22%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 22%2C CCT domain protein 22;Note=Similar to CCT motif family protein.;Transcript_evidence=AK098865 (DDBJ%2C Best hit);ORF_evidence=F1DK44 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C B-box (IPR000315),CCT domain (IPR010402);NIAS_FLcDNA=J013001A08;Oryzabase=11649;Expression=AK098865;TENOR=Os06t0298200-01;KEGG=Os06t0298200-01
Chr06	irgsp1_rep	five_prime_UTR	11076466	11076691	.	-	.	Parent=Os06t0298200-01
Chr06	irgsp1_rep	five_prime_UTR	11074454	11074545	.	-	.	Parent=Os06t0298200-01
Chr06	irgsp1_rep	CDS	11073863	11074453	.	-	0	Parent=Os06t0298200-01
Chr06	irgsp1_rep	CDS	11072434	11072634	.	-	0	Parent=Os06t0298200-01
Chr06	irgsp1_rep	CDS	11071511	11071815	.	-	0	Parent=Os06t0298200-01
Chr06	irgsp1_rep	CDS	11070834	11070963	.	-	1	Parent=Os06t0298200-01
Chr06	irgsp1_rep	three_prime_UTR	11070178	11070833	.	-	.	Parent=Os06t0298200-01
Chr06	irgsp1_rep	mRNA	11070174	11076688	.	-	.	ID=Os06t0298200-02;Name=Os06t0298200-02;Locus_id=Os06g0298200;Oryzabase Gene Symbol Synonym(s)=OsBBX19%2C BBX19%2C OsM%2C DTH2%2C qDTH-2%2C OsCCT22%2C CCT22;Oryzabase Gene Name Synonym(s)=B-box-containing protein 19%2C Days to heading on Chromosome 2%2C CCT domain-containing gene 22%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 22%2C CCT domain protein 22;Note=Similar to Oryza sativa (indica cultivar-group) Hd1.;Transcript_evidence=AK121630 (DDBJ%2C Best hit),AK072192 (DDBJ%2C Best hit);ORF_evidence=F1DK44 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C B-box (IPR000315),CCT domain (IPR010402);NIAS_FLcDNA=J033050D14,J013152B04;Oryzabase=11649;Expression=AK121630;TENOR=Os06t0298200-02;KEGG=Os06t0298200-02
Chr06	irgsp1_rep	five_prime_UTR	11076466	11076688	.	-	.	Parent=Os06t0298200-02
Chr06	irgsp1_rep	five_prime_UTR	11074454	11074545	.	-	.	Parent=Os06t0298200-02
Chr06	irgsp1_rep	CDS	11073863	11074453	.	-	0	Parent=Os06t0298200-02
Chr06	irgsp1_rep	CDS	11072434	11072634	.	-	0	Parent=Os06t0298200-02
Chr06	irgsp1_rep	CDS	11071511	11071812	.	-	0	Parent=Os06t0298200-02
Chr06	irgsp1_rep	CDS	11070834	11070963	.	-	1	Parent=Os06t0298200-02
Chr06	irgsp1_rep	three_prime_UTR	11070174	11070833	.	-	.	Parent=Os06t0298200-02
Chr06	irgsp1_rep	mRNA	11085836	11094202	.	+	.	ID=Os06t0298400-01;Name=Os06t0298400-01;Locus_id=Os06g0298400;Note=WW/Rsp5/WWP domain containing protein.;Transcript_evidence=AK066952 (DDBJ%2C Best hit);ORF_evidence=B9FSV3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WW/Rsp5/WWP (IPR001202);NIAS_FLcDNA=J013090J20;Expression=AK066952;TENOR=Os06t0298400-01;KEGG=Os06t0298400-01
Chr06	irgsp1_rep	five_prime_UTR	11085836	11085950	.	+	.	Parent=Os06t0298400-01
Chr06	irgsp1_rep	CDS	11085951	11086041	.	+	0	Parent=Os06t0298400-01
Chr06	irgsp1_rep	CDS	11087240	11087320	.	+	2	Parent=Os06t0298400-01
Chr06	irgsp1_rep	CDS	11087810	11087928	.	+	2	Parent=Os06t0298400-01
Chr06	irgsp1_rep	CDS	11088518	11089137	.	+	0	Parent=Os06t0298400-01
Chr06	irgsp1_rep	CDS	11089235	11090427	.	+	1	Parent=Os06t0298400-01
Chr06	irgsp1_rep	CDS	11090523	11090602	.	+	2	Parent=Os06t0298400-01
Chr06	irgsp1_rep	CDS	11090994	11091089	.	+	0	Parent=Os06t0298400-01
Chr06	irgsp1_rep	CDS	11091174	11091247	.	+	0	Parent=Os06t0298400-01
Chr06	irgsp1_rep	CDS	11093250	11093394	.	+	1	Parent=Os06t0298400-01
Chr06	irgsp1_rep	CDS	11093921	11094004	.	+	0	Parent=Os06t0298400-01
Chr06	irgsp1_rep	three_prime_UTR	11094005	11094202	.	+	.	Parent=Os06t0298400-01
Chr06	irgsp1_rep	mRNA	11094771	11097227	.	-	.	ID=Os06t0298500-01;Name=Os06t0298500-01;Locus_id=Os06g0298500;Note=SEC-C motif domain containing protein.;Transcript_evidence=AK108252 (DDBJ%2C Best hit);ORF_evidence=B8B0V5 (UniProt);InterPro=SEC-C motif (IPR004027);NIAS_FLcDNA=002-141-A01;Expression=AK108252;TENOR=Os06t0298500-01;KEGG=Os06t0298500-01
Chr06	irgsp1_rep	five_prime_UTR	11097156	11097227	.	-	.	Parent=Os06t0298500-01
Chr06	irgsp1_rep	CDS	11096996	11097155	.	-	0	Parent=Os06t0298500-01
Chr06	irgsp1_rep	CDS	11096724	11096872	.	-	2	Parent=Os06t0298500-01
Chr06	irgsp1_rep	CDS	11096487	11096648	.	-	0	Parent=Os06t0298500-01
Chr06	irgsp1_rep	CDS	11095727	11095842	.	-	0	Parent=Os06t0298500-01
Chr06	irgsp1_rep	CDS	11095193	11095211	.	-	1	Parent=Os06t0298500-01
Chr06	irgsp1_rep	three_prime_UTR	11094771	11095192	.	-	.	Parent=Os06t0298500-01
Chr06	irgsp1_rep	mRNA	11103008	11105189	.	-	.	ID=Os06t0298700-00;Name=Os06t0298700-00;Locus_id=Os06g0298700;Note=Short-chain dehydrogenase/reductase SDR domain containing protein.;Transcript_evidence=FP096368 (DDBJ);ORF_evidence=B8B0V6 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);TENOR=Os06t0298700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	11104454	11105189	.	-	0	Parent=Os06t0298700-00
Chr06	irgsp1_rep	CDS	11103470	11103545	.	-	2	Parent=Os06t0298700-00
Chr06	irgsp1_rep	CDS	11103008	11103353	.	-	1	Parent=Os06t0298700-00
Chr06	irgsp1_rep	mRNA	11116720	11118276	.	-	.	ID=Os06t0299100-01;Name=Os06t0299100-01;Locus_id=Os06g0299100;Note=Glucose/ribitol dehydrogenase family protein.;Transcript_evidence=AK066533 (DDBJ%2C Best hit);ORF_evidence=Q01MW5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);NIAS_FLcDNA=J013073H04;Expression=AK066533;TENOR=Os06t0299100-01;KEGG=Os06t0299100-01
Chr06	irgsp1_rep	five_prime_UTR	11118233	11118276	.	-	.	Parent=Os06t0299100-01
Chr06	irgsp1_rep	CDS	11117562	11118232	.	-	0	Parent=Os06t0299100-01
Chr06	irgsp1_rep	CDS	11117403	11117472	.	-	1	Parent=Os06t0299100-01
Chr06	irgsp1_rep	CDS	11117030	11117278	.	-	0	Parent=Os06t0299100-01
Chr06	irgsp1_rep	three_prime_UTR	11116720	11117029	.	-	.	Parent=Os06t0299100-01
Chr06	irgsp1_rep	mRNA	11121902	11123663	.	-	.	ID=Os06t0299200-00;Name=Os06t0299200-00;Locus_id=Os06g0299200;Note=Similar to H0207B04.1 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001057446.2 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);TENOR=Os06t0299200-00;KEGG=Os06t0299200-00
Chr06	irgsp1_rep	CDS	11123104	11123663	.	-	0	Parent=Os06t0299200-00
Chr06	irgsp1_rep	CDS	11122312	11122381	.	-	1	Parent=Os06t0299200-00
Chr06	irgsp1_rep	CDS	11121902	11122162	.	-	0	Parent=Os06t0299200-00
Chr06	irgsp1_rep	mRNA	11132811	11134650	.	-	.	ID=Os06t0299300-01;Name=Os06t0299300-01;Locus_id=Os06g0299300;Note=Short-chain dehydrogenase/reductase SDR domain containing protein.;Transcript_evidence=AK060501 (DDBJ%2C Best hit),AK067625 (DDBJ%2C Best hit);ORF_evidence=Q01MW5 (UniProt);NIAS_FLcDNA=001-017-G10,J013113L03;TENOR=Os06t0299300-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	11134509	11134650	.	-	.	Parent=Os06t0299300-01
Chr06	irgsp1_rep	CDS	11133847	11134508	.	-	0	Parent=Os06t0299300-01
Chr06	irgsp1_rep	CDS	11133648	11133717	.	-	1	Parent=Os06t0299300-01
Chr06	irgsp1_rep	CDS	11132886	11133146	.	-	0	Parent=Os06t0299300-01
Chr06	irgsp1_rep	three_prime_UTR	11132811	11132885	.	-	.	Parent=Os06t0299300-01
Chr06	irgsp1_rep	mRNA	11135757	11135957	.	+	.	ID=Os06t0299400-00;Name=Os06t0299400-00;Locus_id=Os06g0299400;Note=Non-protein coding transcript.;Transcript_evidence=BT086891 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0299400-00
Chr06	irgsp1_rep	exon	11135757	11135957	.	+	.	Parent=Os06t0299400-00
Chr06	irgsp1_rep	mRNA	11135770	11135977	.	-	.	ID=Os06t0299500-00;Name=Os06t0299500-00;Locus_id=Os06g0299500;Note=Similar to J023036E09%2C full insert sequence (Fragment).;Transcript_evidence=AJ495773 (DDBJ);ORF_evidence=B7EH87 (UniProt);TENOR=Os06t0299500-00
Chr06	irgsp1_rep	CDS	11135783	11135977	.	-	0	Parent=Os06t0299500-00
Chr06	irgsp1_rep	three_prime_UTR	11135770	11135782	.	-	.	Parent=Os06t0299500-00
Chr06	irgsp1_rep	mRNA	11170411	11174887	.	-	.	ID=Os06t0300000-01;Name=Os06t0300000-01;Locus_id=Os06g0300000;Note=Short-chain dehydrogenase/reductase SDR domain containing protein.;Transcript_evidence=AK109790 (DDBJ%2C Best hit);ORF_evidence=Q01MW5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=002-147-D07;Expression=AK109790;TENOR=Os06t0300000-01;KEGG=Os06t0300000-01 (EC:1.1.1.-)
Chr06	irgsp1_rep	five_prime_UTR	11174838	11174887	.	-	.	Parent=Os06t0300000-01
Chr06	irgsp1_rep	CDS	11174164	11174837	.	-	0	Parent=Os06t0300000-01
Chr06	irgsp1_rep	CDS	11173627	11173696	.	-	1	Parent=Os06t0300000-01
Chr06	irgsp1_rep	CDS	11170656	11171009	.	-	0	Parent=Os06t0300000-01
Chr06	irgsp1_rep	three_prime_UTR	11170411	11170655	.	-	.	Parent=Os06t0300000-01
Chr06	irgsp1_rep	mRNA	11170702	11174895	.	+	.	ID=Os06t0300100-00;Name=Os06t0300100-00;Locus_id=Os06g0300100;Note=Hypothetical protein.;Transcript_evidence=tplb0031o17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0300100-00
Chr06	irgsp1_rep	five_prime_UTR	11170702	11171928	.	+	.	Parent=Os06t0300100-00
Chr06	irgsp1_rep	five_prime_UTR	11173539	11173692	.	+	.	Parent=Os06t0300100-00
Chr06	irgsp1_rep	five_prime_UTR	11174159	11174205	.	+	.	Parent=Os06t0300100-00
Chr06	irgsp1_rep	CDS	11174206	11174664	.	+	0	Parent=Os06t0300100-00
Chr06	irgsp1_rep	three_prime_UTR	11174665	11174895	.	+	.	Parent=Os06t0300100-00
Chr06	irgsp1_rep	mRNA	11179549	11181358	.	-	.	ID=Os06t0300200-00;Name=Os06t0300200-00;Locus_id=Os06g0300200;Note=Similar to H0207B04.1 protein.;Transcript_evidence=AK375094 (DDBJ);ORF_evidence=Q01MW5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);TENOR=Os06t0300200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	11181013	11181358	.	-	0	Parent=Os06t0300200-00
Chr06	irgsp1_rep	CDS	11180209	11180497	.	-	2	Parent=Os06t0300200-00
Chr06	irgsp1_rep	CDS	11180022	11180124	.	-	1	Parent=Os06t0300200-00
Chr06	irgsp1_rep	CDS	11179549	11179803	.	-	0	Parent=Os06t0300200-00
Chr06	irgsp1_rep	mRNA	11184920	11189423	.	-	.	ID=Os06t0300300-01;Name=Os06t0300300-01;Locus_id=Os06g0300300;Note=SFT2-like family protein.;Transcript_evidence=AK068813 (DDBJ%2C Best hit),AK109425 (DDBJ%2C Best hit);ORF_evidence=NP_001149600.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: integral to membrane (GO:0016021);InterPro=Vesicle transport protein%2C Got1/SFT2-like (IPR007305),Vesicle transport protein%2C SFT2-like (IPR011691);NIAS_FLcDNA=J013159M08,006-306-C05;Expression=AK068813;TENOR=Os06t0300300-01;KEGG=Os06t0300300-01
Chr06	irgsp1_rep	five_prime_UTR	11189300	11189423	.	-	.	Parent=Os06t0300300-01
Chr06	irgsp1_rep	CDS	11189097	11189299	.	-	0	Parent=Os06t0300300-01
Chr06	irgsp1_rep	CDS	11188738	11189005	.	-	1	Parent=Os06t0300300-01
Chr06	irgsp1_rep	CDS	11185544	11185648	.	-	0	Parent=Os06t0300300-01
Chr06	irgsp1_rep	CDS	11185125	11185235	.	-	0	Parent=Os06t0300300-01
Chr06	irgsp1_rep	three_prime_UTR	11184920	11185124	.	-	.	Parent=Os06t0300300-01
Chr06	irgsp1_rep	mRNA	11185015	11188964	.	+	.	ID=Os06t0300333-00;Name=Os06t0300333-00;Locus_id=Os06g0300333;Note=Hypothetical gene.;Transcript_evidence=BT009643 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0300333-00
Chr06	irgsp1_rep	five_prime_UTR	11185015	11185237	.	+	.	Parent=Os06t0300333-00
Chr06	irgsp1_rep	five_prime_UTR	11185550	11185638	.	+	.	Parent=Os06t0300333-00
Chr06	irgsp1_rep	CDS	11185639	11185641	.	+	0	Parent=Os06t0300333-00
Chr06	irgsp1_rep	CDS	11188732	11188964	.	+	0	Parent=Os06t0300333-00
Chr06	irgsp1_rep	mRNA	11189652	11192921	.	+	.	ID=Os06t0300366-01;Name=Os06t0300366-01;Locus_id=Os06g0300366;Note=Hypothetical gene.;Transcript_evidence=AK288218 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090011H04;TENOR=Os06t0300366-01;KEGG=Os06t0300366-01
Chr06	irgsp1_rep	five_prime_UTR	11189652	11191220	.	+	.	Parent=Os06t0300366-01
Chr06	irgsp1_rep	CDS	11191221	11191490	.	+	0	Parent=Os06t0300366-01
Chr06	irgsp1_rep	three_prime_UTR	11191491	11192921	.	+	.	Parent=Os06t0300366-01
Chr06	irgsp1_rep	mRNA	11200132	11203938	.	-	.	ID=Os06t0300500-01;Name=Os06t0300500-01;Locus_id=Os06g0300500;Note=Steroid nuclear receptor%2C ligand-binding domain containing protein.;Transcript_evidence=AK111400 (DDBJ%2C Best hit);ORF_evidence=B9FSW0 (UniProt);NIAS_FLcDNA=002-182-E02;Expression=AK111400;TENOR=Os06t0300500-01;KEGG=Os06t0300500-01
Chr06	irgsp1_rep	five_prime_UTR	11203796	11203938	.	-	.	Parent=Os06t0300500-01
Chr06	irgsp1_rep	CDS	11203653	11203795	.	-	0	Parent=Os06t0300500-01
Chr06	irgsp1_rep	CDS	11203262	11203454	.	-	1	Parent=Os06t0300500-01
Chr06	irgsp1_rep	CDS	11203030	11203166	.	-	0	Parent=Os06t0300500-01
Chr06	irgsp1_rep	CDS	11202378	11202666	.	-	1	Parent=Os06t0300500-01
Chr06	irgsp1_rep	CDS	11201765	11201871	.	-	0	Parent=Os06t0300500-01
Chr06	irgsp1_rep	CDS	11201471	11201639	.	-	1	Parent=Os06t0300500-01
Chr06	irgsp1_rep	CDS	11201154	11201349	.	-	0	Parent=Os06t0300500-01
Chr06	irgsp1_rep	CDS	11200799	11201039	.	-	2	Parent=Os06t0300500-01
Chr06	irgsp1_rep	CDS	11200426	11200660	.	-	1	Parent=Os06t0300500-01
Chr06	irgsp1_rep	three_prime_UTR	11200132	11200425	.	-	.	Parent=Os06t0300500-01
Chr06	irgsp1_rep	mRNA	11204807	11208076	.	-	.	ID=Os06t0300600-01;Name=Os06t0300600-01;Locus_id=Os06g0300600;Note=Similar to Decoy.;Transcript_evidence=AK060668 (DDBJ%2C Best hit);ORF_evidence=NP_172914.1 (RefSeq);InterPro=Ribosomal protein L46 (IPR021757);NIAS_FLcDNA=001-028-E08;TENOR=Os06t0300600-01;KEGG=Os06t0300600-01
Chr06	irgsp1_rep	five_prime_UTR	11208016	11208076	.	-	.	Parent=Os06t0300600-01
Chr06	irgsp1_rep	CDS	11207813	11208015	.	-	0	Parent=Os06t0300600-01
Chr06	irgsp1_rep	CDS	11207645	11207710	.	-	1	Parent=Os06t0300600-01
Chr06	irgsp1_rep	CDS	11206475	11206549	.	-	1	Parent=Os06t0300600-01
Chr06	irgsp1_rep	CDS	11205868	11205997	.	-	1	Parent=Os06t0300600-01
Chr06	irgsp1_rep	CDS	11205580	11205702	.	-	0	Parent=Os06t0300600-01
Chr06	irgsp1_rep	CDS	11205126	11205275	.	-	0	Parent=Os06t0300600-01
Chr06	irgsp1_rep	three_prime_UTR	11204807	11205125	.	-	.	Parent=Os06t0300600-01
Chr06	irgsp1_rep	mRNA	11209862	11215335	.	+	.	ID=Os06t0300700-01;Name=Os06t0300700-01;Locus_id=Os06g0300700;Note=Protein phosphatase 4 core regulatory subunit R2 domain containing protein.;Transcript_evidence=AK071388 (DDBJ%2C Best hit);ORF_evidence=A2YC20 (UniProt);InterPro=Protein phosphatase 4 core regulatory subunit R2 (IPR015267);NIAS_FLcDNA=J023091P20;Expression=AK071388;TENOR=Os06t0300700-01;KEGG=Os06t0300700-01
Chr06	irgsp1_rep	five_prime_UTR	11209862	11209927	.	+	.	Parent=Os06t0300700-01
Chr06	irgsp1_rep	five_prime_UTR	11210141	11210158	.	+	.	Parent=Os06t0300700-01
Chr06	irgsp1_rep	CDS	11210159	11210349	.	+	0	Parent=Os06t0300700-01
Chr06	irgsp1_rep	CDS	11212108	11212188	.	+	1	Parent=Os06t0300700-01
Chr06	irgsp1_rep	CDS	11212557	11212605	.	+	1	Parent=Os06t0300700-01
Chr06	irgsp1_rep	CDS	11212711	11212819	.	+	0	Parent=Os06t0300700-01
Chr06	irgsp1_rep	CDS	11213599	11213651	.	+	2	Parent=Os06t0300700-01
Chr06	irgsp1_rep	CDS	11213798	11213860	.	+	0	Parent=Os06t0300700-01
Chr06	irgsp1_rep	CDS	11214641	11214988	.	+	0	Parent=Os06t0300700-01
Chr06	irgsp1_rep	three_prime_UTR	11214989	11215335	.	+	.	Parent=Os06t0300700-01
Chr06	irgsp1_rep	mRNA	11219921	11228576	.	+	.	ID=Os06t0300800-01;Name=Os06t0300800-01;Locus_id=Os06g0300800;Oryzabase Gene Symbol Synonym(s)=OsWD40-128;Note=Hypothetical conserved gene.;Transcript_evidence=AK111728 (DDBJ%2C Best hit);ORF_evidence=Q5ZA32 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J023037K06;Oryzabase=10809;Expression=AK111728;TENOR=Os06t0300800-01;KEGG=Os06t0300800-01
Chr06	irgsp1_rep	five_prime_UTR	11219921	11220040	.	+	.	Parent=Os06t0300800-01
Chr06	irgsp1_rep	CDS	11220041	11220811	.	+	0	Parent=Os06t0300800-01
Chr06	irgsp1_rep	CDS	11221455	11221504	.	+	0	Parent=Os06t0300800-01
Chr06	irgsp1_rep	CDS	11221597	11221753	.	+	1	Parent=Os06t0300800-01
Chr06	irgsp1_rep	CDS	11221841	11222059	.	+	0	Parent=Os06t0300800-01
Chr06	irgsp1_rep	CDS	11222544	11222672	.	+	0	Parent=Os06t0300800-01
Chr06	irgsp1_rep	CDS	11223745	11224318	.	+	0	Parent=Os06t0300800-01
Chr06	irgsp1_rep	CDS	11224415	11225274	.	+	2	Parent=Os06t0300800-01
Chr06	irgsp1_rep	CDS	11225897	11226256	.	+	0	Parent=Os06t0300800-01
Chr06	irgsp1_rep	CDS	11226329	11226448	.	+	0	Parent=Os06t0300800-01
Chr06	irgsp1_rep	CDS	11226970	11227140	.	+	0	Parent=Os06t0300800-01
Chr06	irgsp1_rep	CDS	11227265	11227423	.	+	0	Parent=Os06t0300800-01
Chr06	irgsp1_rep	CDS	11227570	11227695	.	+	0	Parent=Os06t0300800-01
Chr06	irgsp1_rep	CDS	11227903	11228211	.	+	0	Parent=Os06t0300800-01
Chr06	irgsp1_rep	three_prime_UTR	11228212	11228576	.	+	.	Parent=Os06t0300800-01
Chr06	irgsp1_rep	mRNA	11220341	11228544	.	+	.	ID=Os06t0300800-02;Name=Os06t0300800-02;Locus_id=Os06g0300800;Oryzabase Gene Symbol Synonym(s)=OsWD40-128;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK100649 (DDBJ%2C Best hit);ORF_evidence=B8B0W2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J023110O17;Oryzabase=10809;Expression=AK100649;TENOR=Os06t0300800-02;KEGG=Os06t0300800-02
Chr06	irgsp1_rep	five_prime_UTR	11220341	11220397	.	+	.	Parent=Os06t0300800-02
Chr06	irgsp1_rep	CDS	11220398	11220811	.	+	0	Parent=Os06t0300800-02
Chr06	irgsp1_rep	CDS	11221455	11221504	.	+	0	Parent=Os06t0300800-02
Chr06	irgsp1_rep	CDS	11221597	11221753	.	+	1	Parent=Os06t0300800-02
Chr06	irgsp1_rep	CDS	11221841	11222059	.	+	0	Parent=Os06t0300800-02
Chr06	irgsp1_rep	CDS	11222544	11222672	.	+	0	Parent=Os06t0300800-02
Chr06	irgsp1_rep	CDS	11223745	11224318	.	+	0	Parent=Os06t0300800-02
Chr06	irgsp1_rep	CDS	11224415	11224663	.	+	2	Parent=Os06t0300800-02
Chr06	irgsp1_rep	CDS	11224748	11225274	.	+	2	Parent=Os06t0300800-02
Chr06	irgsp1_rep	CDS	11225897	11226256	.	+	0	Parent=Os06t0300800-02
Chr06	irgsp1_rep	CDS	11226329	11226448	.	+	0	Parent=Os06t0300800-02
Chr06	irgsp1_rep	CDS	11226970	11227140	.	+	0	Parent=Os06t0300800-02
Chr06	irgsp1_rep	CDS	11227265	11227423	.	+	0	Parent=Os06t0300800-02
Chr06	irgsp1_rep	CDS	11227570	11227695	.	+	0	Parent=Os06t0300800-02
Chr06	irgsp1_rep	CDS	11227903	11228211	.	+	0	Parent=Os06t0300800-02
Chr06	irgsp1_rep	three_prime_UTR	11228212	11228544	.	+	.	Parent=Os06t0300800-02
Chr06	irgsp1_rep	mRNA	11237438	11242796	.	-	.	ID=Os06t0301000-01;Name=Os06t0301000-01;Locus_id=Os06g0301000;RAP-DB Gene Symbol Synonym(s)=MAL%2C OsMAL;RAP-DB Gene Name Synonym(s)=MERISTEM ACTIVITYLESS;CGSNL Gene Symbol=HRD1;Oryzabase Gene Symbol Synonym(s)=OsHrd1%2C Hrd1;Oryzabase Gene Name Synonym(s)=a homologue of yeast Hrd1;Note=RING-H2 finger domain (RFD)-containing protein%2C Regulation of meristem cell viability%2C Root development;Transcript_evidence=AK073960;ORF_evidence=Q5Z880;InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841);NIAS_FLcDNA=J033072K04;Manual Curation=September 23%2C 2020;Literature_PMID=32918256;Oryzabase=19802;Expression=AK073960;TENOR=Os06t0301000-01;KEGG=Os06t0301000-01 (EC:6.3.2.27)
Chr06	irgsp1_rep	five_prime_UTR	11242585	11242796	.	-	.	Parent=Os06t0301000-01
Chr06	irgsp1_rep	five_prime_UTR	11242399	11242431	.	-	.	Parent=Os06t0301000-01
Chr06	irgsp1_rep	CDS	11241866	11242398	.	-	0	Parent=Os06t0301000-01
Chr06	irgsp1_rep	CDS	11241091	11241267	.	-	1	Parent=Os06t0301000-01
Chr06	irgsp1_rep	CDS	11240859	11241008	.	-	1	Parent=Os06t0301000-01
Chr06	irgsp1_rep	CDS	11240582	11240784	.	-	1	Parent=Os06t0301000-01
Chr06	irgsp1_rep	CDS	11240365	11240506	.	-	2	Parent=Os06t0301000-01
Chr06	irgsp1_rep	CDS	11238882	11239089	.	-	1	Parent=Os06t0301000-01
Chr06	irgsp1_rep	CDS	11237821	11237910	.	-	0	Parent=Os06t0301000-01
Chr06	irgsp1_rep	three_prime_UTR	11237438	11237820	.	-	.	Parent=Os06t0301000-01
Chr06	irgsp1_rep	mRNA	11244763	11248655	.	-	.	ID=Os06t0301100-01;Name=Os06t0301100-01;Locus_id=Os06g0301100;Note=Similar to OSIGBa0124N08.6 protein.;Transcript_evidence=AK242142 (DDBJ%2C Best hit);ORF_evidence=B8B0W5 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Uncharacterised protein family UPF0136%2C Transmembrane (IPR005349);NIAS_FLcDNA=J075150J23;TENOR=Os06t0301100-01;KEGG=Os06t0301100-01
Chr06	irgsp1_rep	five_prime_UTR	11248519	11248655	.	-	.	Parent=Os06t0301100-01
Chr06	irgsp1_rep	CDS	11248345	11248518	.	-	0	Parent=Os06t0301100-01
Chr06	irgsp1_rep	CDS	11246521	11246719	.	-	0	Parent=Os06t0301100-01
Chr06	irgsp1_rep	CDS	11245460	11245627	.	-	2	Parent=Os06t0301100-01
Chr06	irgsp1_rep	CDS	11245197	11245243	.	-	2	Parent=Os06t0301100-01
Chr06	irgsp1_rep	CDS	11245079	11245119	.	-	0	Parent=Os06t0301100-01
Chr06	irgsp1_rep	CDS	11244907	11244991	.	-	1	Parent=Os06t0301100-01
Chr06	irgsp1_rep	three_prime_UTR	11244763	11244906	.	-	.	Parent=Os06t0301100-01
Chr06	irgsp1_rep	mRNA	11264620	11270656	.	+	.	ID=Os06t0301300-00;Name=Os06t0301300-00;Locus_id=Os06g0301300;Note=Similar to predicted protein.;Transcript_evidence=CT836217 (DDBJ%2C Best hit);ORF_evidence=NP_187941.5 (RefSeq);TENOR=Os06t0301300-00
Chr06	irgsp1_rep	five_prime_UTR	11264620	11264735	.	+	.	Parent=Os06t0301300-00
Chr06	irgsp1_rep	CDS	11264736	11264896	.	+	0	Parent=Os06t0301300-00
Chr06	irgsp1_rep	CDS	11266359	11266461	.	+	1	Parent=Os06t0301300-00
Chr06	irgsp1_rep	CDS	11266554	11266666	.	+	0	Parent=Os06t0301300-00
Chr06	irgsp1_rep	CDS	11266745	11266867	.	+	1	Parent=Os06t0301300-00
Chr06	irgsp1_rep	CDS	11267408	11267509	.	+	1	Parent=Os06t0301300-00
Chr06	irgsp1_rep	CDS	11267610	11267775	.	+	1	Parent=Os06t0301300-00
Chr06	irgsp1_rep	CDS	11268458	11268574	.	+	0	Parent=Os06t0301300-00
Chr06	irgsp1_rep	CDS	11268825	11268892	.	+	0	Parent=Os06t0301300-00
Chr06	irgsp1_rep	CDS	11268978	11269079	.	+	1	Parent=Os06t0301300-00
Chr06	irgsp1_rep	CDS	11269167	11269383	.	+	1	Parent=Os06t0301300-00
Chr06	irgsp1_rep	CDS	11269514	11269741	.	+	0	Parent=Os06t0301300-00
Chr06	irgsp1_rep	CDS	11269823	11269950	.	+	0	Parent=Os06t0301300-00
Chr06	irgsp1_rep	CDS	11270047	11270164	.	+	1	Parent=Os06t0301300-00
Chr06	irgsp1_rep	CDS	11270263	11270478	.	+	0	Parent=Os06t0301300-00
Chr06	irgsp1_rep	CDS	11270557	11270656	.	+	0	Parent=Os06t0301300-00
Chr06	irgsp1_rep	mRNA	11283478	11293833	.	-	.	ID=Os06t0301400-00;Name=Os06t0301400-00;Locus_id=Os06g0301400;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9EXD8 (UniProt);TENOR=Os06t0301400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	11293786	11293833	.	-	0	Parent=Os06t0301400-00
Chr06	irgsp1_rep	CDS	11292252	11292414	.	-	0	Parent=Os06t0301400-00
Chr06	irgsp1_rep	CDS	11283478	11284781	.	-	2	Parent=Os06t0301400-00
Chr06	irgsp1_rep	mRNA	11288003	11288733	.	+	.	ID=Os06t0301500-01;Name=Os06t0301500-01;Locus_id=Os06g0301500;Note=Hypothetical protein.;Transcript_evidence=AK099059 (DDBJ%2C Best hit),AK073716 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013154F12,J033059L11;Expression=AK099059;TENOR=Os06t0301500-01;KEGG=Os06t0301500-01
Chr06	irgsp1_rep	five_prime_UTR	11288003	11288247	.	+	.	Parent=Os06t0301500-01
Chr06	irgsp1_rep	CDS	11288248	11288565	.	+	0	Parent=Os06t0301500-01
Chr06	irgsp1_rep	three_prime_UTR	11288566	11288733	.	+	.	Parent=Os06t0301500-01
Chr06	irgsp1_rep	mRNA	11314276	11318488	.	+	.	ID=Os06t0302000-01;Name=Os06t0302000-01;Locus_id=Os06g0302000;Oryzabase Gene Symbol Synonym(s)=OsBURP11;Oryzabase Gene Name Synonym(s)=BURP domain-containing protein 11;Note=Similar to BURP domain-containing protein 11.;Transcript_evidence=AK106070 (DDBJ%2C Best hit);ORF_evidence=Q5Z5C9 (UniProt);NIAS_FLcDNA=001-206-H06;Oryzabase=15050;TENOR=Os06t0302000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	11314276	11314277	.	+	.	Parent=Os06t0302000-01
Chr06	irgsp1_rep	CDS	11314278	11314308	.	+	0	Parent=Os06t0302000-01
Chr06	irgsp1_rep	CDS	11314412	11314513	.	+	2	Parent=Os06t0302000-01
Chr06	irgsp1_rep	CDS	11314613	11314735	.	+	2	Parent=Os06t0302000-01
Chr06	irgsp1_rep	CDS	11315034	11315156	.	+	2	Parent=Os06t0302000-01
Chr06	irgsp1_rep	CDS	11315452	11315574	.	+	2	Parent=Os06t0302000-01
Chr06	irgsp1_rep	CDS	11315916	11315953	.	+	2	Parent=Os06t0302000-01
Chr06	irgsp1_rep	three_prime_UTR	11315954	11316004	.	+	.	Parent=Os06t0302000-01
Chr06	irgsp1_rep	three_prime_UTR	11316104	11316205	.	+	.	Parent=Os06t0302000-01
Chr06	irgsp1_rep	three_prime_UTR	11317453	11318488	.	+	.	Parent=Os06t0302000-01
Chr06	irgsp1_rep	mRNA	11332104	11332722	.	+	.	ID=Os06t0302650-00;Name=Os06t0302650-00;Locus_id=Os06g0302650;Note=BURP domain containing protein.;Transcript_evidence=BT055204 (DDBJ);ORF_evidence=B8B0X5 (UniProt);InterPro=BURP (IPR004873);TENOR=Os06t0302650-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	11332104	11332139	.	+	.	Parent=Os06t0302650-00
Chr06	irgsp1_rep	CDS	11332140	11332544	.	+	0	Parent=Os06t0302650-00
Chr06	irgsp1_rep	three_prime_UTR	11332545	11332722	.	+	.	Parent=Os06t0302650-00
Chr06	irgsp1_rep	mRNA	11436558	11447615	.	+	.	ID=Os06t0303400-00;Name=Os06t0303400-00;Locus_id=Os06g0303400;Note=Similar to aconitate hydratase%2C cytoplasmic.;Transcript_evidence=BT063513 (DDBJ);ORF_evidence=NP_001147431.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: 4 iron%2C 4 sulfur cluster binding (GO:0051539);InterPro=Aconitase A/isopropylmalate dehydratase small subunit%2C swivel (IPR000573),Aconitase/3-isopropylmalate dehydratase large subunit%2C alpha/beta/alpha (IPR001030),Aconitase/iron regulatory protein 2 (IPR006249),Aconitase/3-isopropylmalate dehydratase%2C swivel (IPR015928),Aconitase/3-isopropylmalate dehydratase large subunit%2C alpha/beta/alpha%2C subdomain 1/3 (IPR015931),Aconitase/3-isopropylmalate dehydratase large subunit%2C alpha/beta/alpha%2C subdomain 2 (IPR015932),Aconitase/Iron regulatory protein 2/2-methylisocitrate dehydratase (IPR015934),Aconitase/isopropylmalate dehydratase (IPR015937),Aconitase family%2C 4Fe-4S cluster binding site (IPR018136);TENOR=Os06t0303400-00;KEGG=Os06t0303400-00 (EC:4.2.1.3)
Chr06	irgsp1_rep	CDS	11436558	11436717	.	+	0	Parent=Os06t0303400-00
Chr06	irgsp1_rep	CDS	11438654	11438814	.	+	2	Parent=Os06t0303400-00
Chr06	irgsp1_rep	CDS	11438896	11438988	.	+	0	Parent=Os06t0303400-00
Chr06	irgsp1_rep	CDS	11439077	11439262	.	+	0	Parent=Os06t0303400-00
Chr06	irgsp1_rep	CDS	11440356	11440517	.	+	0	Parent=Os06t0303400-00
Chr06	irgsp1_rep	CDS	11441835	11441979	.	+	0	Parent=Os06t0303400-00
Chr06	irgsp1_rep	CDS	11442105	11442247	.	+	2	Parent=Os06t0303400-00
Chr06	irgsp1_rep	CDS	11443845	11443901	.	+	0	Parent=Os06t0303400-00
Chr06	irgsp1_rep	CDS	11443993	11444072	.	+	0	Parent=Os06t0303400-00
Chr06	irgsp1_rep	CDS	11444173	11444248	.	+	1	Parent=Os06t0303400-00
Chr06	irgsp1_rep	CDS	11444331	11444516	.	+	0	Parent=Os06t0303400-00
Chr06	irgsp1_rep	CDS	11445482	11445549	.	+	0	Parent=Os06t0303400-00
Chr06	irgsp1_rep	CDS	11445654	11445772	.	+	1	Parent=Os06t0303400-00
Chr06	irgsp1_rep	CDS	11445863	11445984	.	+	2	Parent=Os06t0303400-00
Chr06	irgsp1_rep	CDS	11446246	11446344	.	+	0	Parent=Os06t0303400-00
Chr06	irgsp1_rep	CDS	11446700	11447191	.	+	0	Parent=Os06t0303400-00
Chr06	irgsp1_rep	CDS	11447502	11447615	.	+	0	Parent=Os06t0303400-00
Chr06	irgsp1_rep	mRNA	11445860	11447091	.	-	.	ID=Os06t0303501-00;Name=Os06t0303501-00;Locus_id=Os06g0303501;Note=Hypothetical gene.;Transcript_evidence=EU944133 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0303501-00;KEGG=Os06t0303501-00
Chr06	irgsp1_rep	five_prime_UTR	11446873	11447091	.	-	.	Parent=Os06t0303501-00
Chr06	irgsp1_rep	CDS	11446856	11446872	.	-	0	Parent=Os06t0303501-00
Chr06	irgsp1_rep	CDS	11446252	11446366	.	-	1	Parent=Os06t0303501-00
Chr06	irgsp1_rep	CDS	11445966	11446076	.	-	0	Parent=Os06t0303501-00
Chr06	irgsp1_rep	three_prime_UTR	11445860	11445965	.	-	.	Parent=Os06t0303501-00
Chr06	irgsp1_rep	mRNA	11448759	11449309	.	-	.	ID=Os06t0303600-01;Name=Os06t0303600-01;Locus_id=Os06g0303600;Note=Hypothetical conserved gene.;Transcript_evidence=AK062462 (DDBJ%2C Best hit);ORF_evidence=Q2QNP1 (UniProt);NIAS_FLcDNA=001-103-D10;Expression=AK062462;TENOR=Os06t0303600-01;KEGG=Os06t0303600-01
Chr06	irgsp1_rep	five_prime_UTR	11449021	11449309	.	-	.	Parent=Os06t0303600-01
Chr06	irgsp1_rep	CDS	11448862	11449020	.	-	0	Parent=Os06t0303600-01
Chr06	irgsp1_rep	three_prime_UTR	11448759	11448861	.	-	.	Parent=Os06t0303600-01
Chr06	irgsp1_rep	mRNA	11453023	11460639	.	+	.	ID=Os06t0303700-00;Name=Os06t0303700-00;Locus_id=Os06g0303700;Note=Similar to Myb-like DNA-binding domain containing protein.;Transcript_evidence=EU961983 (DDBJ);ORF_evidence=B6TAG8 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),MYB-like (IPR017877);TENOR=Os06t0303700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	11453023	11454129	.	+	0	Parent=Os06t0303700-00
Chr06	irgsp1_rep	CDS	11454885	11454969	.	+	0	Parent=Os06t0303700-00
Chr06	irgsp1_rep	CDS	11455296	11455407	.	+	2	Parent=Os06t0303700-00
Chr06	irgsp1_rep	CDS	11456074	11456192	.	+	1	Parent=Os06t0303700-00
Chr06	irgsp1_rep	CDS	11457713	11457744	.	+	2	Parent=Os06t0303700-00
Chr06	irgsp1_rep	three_prime_UTR	11457745	11457805	.	+	.	Parent=Os06t0303700-00
Chr06	irgsp1_rep	three_prime_UTR	11457970	11458046	.	+	.	Parent=Os06t0303700-00
Chr06	irgsp1_rep	three_prime_UTR	11458775	11458849	.	+	.	Parent=Os06t0303700-00
Chr06	irgsp1_rep	three_prime_UTR	11459743	11459805	.	+	.	Parent=Os06t0303700-00
Chr06	irgsp1_rep	three_prime_UTR	11460507	11460639	.	+	.	Parent=Os06t0303700-00
Chr06	irgsp1_rep	mRNA	11461523	11464787	.	+	.	ID=Os06t0303800-01;Name=Os06t0303800-01;Locus_id=Os06g0303800;Note=Conserved hypothetical protein.;Transcript_evidence=AK100772 (DDBJ%2C Best hit);ORF_evidence=Q5Z4B9 (UniProt);NIAS_FLcDNA=J023120A05;TENOR=Os06t0303800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	11461523	11461620	.	+	.	Parent=Os06t0303800-01
Chr06	irgsp1_rep	CDS	11461621	11461657	.	+	0	Parent=Os06t0303800-01
Chr06	irgsp1_rep	CDS	11461884	11461946	.	+	2	Parent=Os06t0303800-01
Chr06	irgsp1_rep	CDS	11464208	11464575	.	+	2	Parent=Os06t0303800-01
Chr06	irgsp1_rep	three_prime_UTR	11464576	11464787	.	+	.	Parent=Os06t0303800-01
Chr06	irgsp1_rep	mRNA	11476337	11482796	.	-	.	ID=Os06t0304300-01;Name=Os06t0304300-01;Locus_id=Os06g0304300;Note=Hypothetical protein.;Transcript_evidence=AK109897 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-149-F03;TENOR=Os06t0304300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	11482740	11482796	.	-	.	Parent=Os06t0304300-01
Chr06	irgsp1_rep	five_prime_UTR	11478139	11478219	.	-	.	Parent=Os06t0304300-01
Chr06	irgsp1_rep	CDS	11478111	11478138	.	-	0	Parent=Os06t0304300-01
Chr06	irgsp1_rep	CDS	11477707	11477978	.	-	2	Parent=Os06t0304300-01
Chr06	irgsp1_rep	CDS	11477447	11477629	.	-	0	Parent=Os06t0304300-01
Chr06	irgsp1_rep	three_prime_UTR	11476337	11477446	.	-	.	Parent=Os06t0304300-01
Chr06	irgsp1_rep	mRNA	11483108	11486724	.	+	.	ID=Os06t0304500-01;Name=Os06t0304500-01;Locus_id=Os06g0304500;Note=RNA-binding%2C CRM domain domain containing protein.;Transcript_evidence=AK119441 (DDBJ%2C Best hit);ORF_evidence=Q208U9 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=RNA-binding%2C CRM domain (IPR001890);NIAS_FLcDNA=001-133-C04;Oryzabase=23502;Expression=AK119441;TENOR=Os06t0304500-01;KEGG=Os06t0304500-01
Chr06	irgsp1_rep	five_prime_UTR	11483108	11483130	.	+	.	Parent=Os06t0304500-01
Chr06	irgsp1_rep	CDS	11483131	11483207	.	+	0	Parent=Os06t0304500-01
Chr06	irgsp1_rep	CDS	11483293	11483671	.	+	1	Parent=Os06t0304500-01
Chr06	irgsp1_rep	CDS	11483777	11484178	.	+	0	Parent=Os06t0304500-01
Chr06	irgsp1_rep	CDS	11484391	11484579	.	+	0	Parent=Os06t0304500-01
Chr06	irgsp1_rep	three_prime_UTR	11484580	11486724	.	+	.	Parent=Os06t0304500-01
Chr06	irgsp1_rep	mRNA	11486965	11494270	.	-	.	ID=Os06t0304600-01;Name=Os06t0304600-01;Locus_id=Os06g0304600;Note=Peptidase aspartic%2C catalytic domain containing protein.;Transcript_evidence=AK060352 (DDBJ%2C Best hit);ORF_evidence=B6TP02 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=001-008-G01;Expression=AK060352;TENOR=Os06t0304600-01;KEGG=Os06t0304600-01
Chr06	irgsp1_rep	five_prime_UTR	11494233	11494270	.	-	.	Parent=Os06t0304600-01
Chr06	irgsp1_rep	CDS	11494117	11494232	.	-	0	Parent=Os06t0304600-01
Chr06	irgsp1_rep	CDS	11491796	11491799	.	-	1	Parent=Os06t0304600-01
Chr06	irgsp1_rep	CDS	11488352	11488665	.	-	0	Parent=Os06t0304600-01
Chr06	irgsp1_rep	CDS	11487409	11487433	.	-	1	Parent=Os06t0304600-01
Chr06	irgsp1_rep	three_prime_UTR	11486965	11487408	.	-	.	Parent=Os06t0304600-01
Chr06	irgsp1_rep	mRNA	11487003	11494269	.	-	.	ID=Os06t0304600-02;Name=Os06t0304600-02;Locus_id=Os06g0304600;Note=Similar to Aspartic proteinase nepenthesin-2.;Transcript_evidence=AK120604 (DDBJ%2C Best hit),AK102614 (DDBJ%2C Best hit);ORF_evidence=B6TBA8 (UniProt);NIAS_FLcDNA=J013150B18,J033099D18;TENOR=Os06t0304600-02;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	11494219	11494269	.	-	.	Parent=Os06t0304600-02
Chr06	irgsp1_rep	CDS	11494119	11494218	.	-	0	Parent=Os06t0304600-02
Chr06	irgsp1_rep	CDS	11487409	11488718	.	-	2	Parent=Os06t0304600-02
Chr06	irgsp1_rep	three_prime_UTR	11487003	11487408	.	-	.	Parent=Os06t0304600-02
Chr06	irgsp1_rep	mRNA	11502037	11506377	.	+	.	ID=Os06t0304700-01;Name=Os06t0304700-01;Locus_id=Os06g0304700;Note=Conserved hypothetical protein.;Transcript_evidence=AK106561 (DDBJ%2C Best hit);ORF_evidence=Q5Z4E4 (UniProt);NIAS_FLcDNA=002-110-C01;Expression=AK106561;TENOR=Os06t0304700-01;KEGG=Os06t0304700-01
Chr06	irgsp1_rep	five_prime_UTR	11502037	11502038	.	+	.	Parent=Os06t0304700-01
Chr06	irgsp1_rep	CDS	11502039	11503823	.	+	0	Parent=Os06t0304700-01
Chr06	irgsp1_rep	three_prime_UTR	11503824	11503847	.	+	.	Parent=Os06t0304700-01
Chr06	irgsp1_rep	three_prime_UTR	11503951	11504233	.	+	.	Parent=Os06t0304700-01
Chr06	irgsp1_rep	three_prime_UTR	11504355	11504488	.	+	.	Parent=Os06t0304700-01
Chr06	irgsp1_rep	three_prime_UTR	11505201	11505298	.	+	.	Parent=Os06t0304700-01
Chr06	irgsp1_rep	three_prime_UTR	11505621	11505807	.	+	.	Parent=Os06t0304700-01
Chr06	irgsp1_rep	three_prime_UTR	11505925	11506377	.	+	.	Parent=Os06t0304700-01
Chr06	irgsp1_rep	mRNA	11515408	11525785	.	+	.	ID=Os06t0305200-01;Name=Os06t0305200-01;Locus_id=Os06g0305200;Note=Nucleoporin%2C non-repetitive/WGA-negative domain containing protein.;Transcript_evidence=AK120378 (DDBJ%2C Best hit);ORF_evidence=NP_172938.2 (RefSeq);GO=Biological Process: nucleocytoplasmic transport (GO:0006913),Cellular Component: nuclear pore (GO:0005643),Molecular Function: structural constituent of nuclear pore (GO:0017056);InterPro=Nucleoporin%2C Nup155-like (IPR004870),Nucleoporin%2C Nup133/Nup155-like%2C C-terminal (IPR007187),Nucleoporin%2C Nup133/Nup155-like%2C N-terminal (IPR014908);NIAS_FLcDNA=J013072A10;Expression=AK120378;TENOR=Os06t0305200-01;KEGG=Os06t0305200-01
Chr06	irgsp1_rep	five_prime_UTR	11515408	11515706	.	+	.	Parent=Os06t0305200-01
Chr06	irgsp1_rep	CDS	11515707	11515868	.	+	0	Parent=Os06t0305200-01
Chr06	irgsp1_rep	CDS	11517846	11518015	.	+	0	Parent=Os06t0305200-01
Chr06	irgsp1_rep	CDS	11518193	11518319	.	+	1	Parent=Os06t0305200-01
Chr06	irgsp1_rep	CDS	11518975	11519237	.	+	0	Parent=Os06t0305200-01
Chr06	irgsp1_rep	CDS	11519319	11520951	.	+	1	Parent=Os06t0305200-01
Chr06	irgsp1_rep	CDS	11521023	11521235	.	+	0	Parent=Os06t0305200-01
Chr06	irgsp1_rep	CDS	11521369	11521616	.	+	0	Parent=Os06t0305200-01
Chr06	irgsp1_rep	CDS	11521720	11522131	.	+	1	Parent=Os06t0305200-01
Chr06	irgsp1_rep	CDS	11522831	11523036	.	+	0	Parent=Os06t0305200-01
Chr06	irgsp1_rep	CDS	11523156	11523501	.	+	1	Parent=Os06t0305200-01
Chr06	irgsp1_rep	CDS	11524455	11524673	.	+	0	Parent=Os06t0305200-01
Chr06	irgsp1_rep	CDS	11524783	11525111	.	+	0	Parent=Os06t0305200-01
Chr06	irgsp1_rep	CDS	11525584	11525683	.	+	1	Parent=Os06t0305200-01
Chr06	irgsp1_rep	three_prime_UTR	11525684	11525785	.	+	.	Parent=Os06t0305200-01
Chr06	irgsp1_rep	mRNA	11524491	11525780	.	+	.	ID=Os06t0305200-02;Name=Os06t0305200-02;Locus_id=Os06g0305200;Note=Similar to NUP155 (Nucleoporin 155).;Transcript_evidence=AK062221 (DDBJ%2C Best hit);ORF_evidence=NP_172938.2 (RefSeq);GO=Biological Process: nucleocytoplasmic transport (GO:0006913),Cellular Component: nuclear pore (GO:0005643),Molecular Function: structural constituent of nuclear pore (GO:0017056);InterPro=Nucleoporin%2C Nup155-like (IPR004870);NIAS_FLcDNA=001-047-B08;Expression=AK062221;TENOR=Os06t0305200-02;KEGG=Os06t0305200-02
Chr06	irgsp1_rep	CDS	11524491	11524673	.	+	0	Parent=Os06t0305200-02
Chr06	irgsp1_rep	CDS	11524783	11525111	.	+	0	Parent=Os06t0305200-02
Chr06	irgsp1_rep	CDS	11525584	11525683	.	+	1	Parent=Os06t0305200-02
Chr06	irgsp1_rep	three_prime_UTR	11525684	11525780	.	+	.	Parent=Os06t0305200-02
Chr06	irgsp1_rep	mRNA	11532362	11536893	.	+	.	ID=Os06t0305400-01;Name=Os06t0305400-01;Locus_id=Os06g0305400;CGSNL Gene Symbol=AM11;CGSNL Gene Name=ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 11;Oryzabase Gene Symbol Synonym(s)=AM11;Note=Peptidase A1 domain containing protein.;Transcript_evidence=AK333105 (DDBJ);ORF_evidence=Q5Z4D8 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);Oryzabase=8184;TENOR=Os06t0305400-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	11532362	11533710	.	+	0	Parent=Os06t0305400-01
Chr06	irgsp1_rep	CDS	11536353	11536893	.	+	1	Parent=Os06t0305400-01
Chr06	irgsp1_rep	mRNA	11555726	11556883	.	-	.	ID=Os06t0306201-00;Name=Os06t0306201-00;Locus_id=Os06g0306201;Note=Hypothetical protein.;Transcript_evidence=EU947645 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0306201-00
Chr06	irgsp1_rep	five_prime_UTR	11556882	11556883	.	-	.	Parent=Os06t0306201-00
Chr06	irgsp1_rep	CDS	11555727	11556881	.	-	0	Parent=Os06t0306201-00
Chr06	irgsp1_rep	three_prime_UTR	11555726	11555726	.	-	.	Parent=Os06t0306201-00
Chr06	irgsp1_rep	mRNA	11559570	11560896	.	+	.	ID=Os06t0306300-01;Name=Os06t0306300-01;Locus_id=Os06g0306300;Oryzabase Gene Symbol Synonym(s)=prx78%2C PRX78%2C OsPRX78;Oryzabase Gene Name Synonym(s)=class III peroxidase 78;Note=Haem peroxidase domain containing protein.;Transcript_evidence=AK241369 (DDBJ%2C Best hit);ORF_evidence=Q5U1L3 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793);NIAS_FLcDNA=J065152P11;Oryzabase=14601;TENOR=Os06t0306300-01;KEGG=Os06t0306300-01
Chr06	irgsp1_rep	five_prime_UTR	11559570	11559601	.	+	.	Parent=Os06t0306300-01
Chr06	irgsp1_rep	CDS	11559602	11560765	.	+	0	Parent=Os06t0306300-01
Chr06	irgsp1_rep	three_prime_UTR	11560766	11560896	.	+	.	Parent=Os06t0306300-01
Chr06	irgsp1_rep	mRNA	11575998	11584432	.	+	.	ID=Os06t0306500-00;Name=Os06t0306500-00;Locus_id=Os06g0306500;Note=Similar to aspartic proteinase nepenthesin-2.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001150335.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);TENOR=Os06t0306500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	11575998	11576197	.	+	0	Parent=Os06t0306500-00
Chr06	irgsp1_rep	CDS	11583442	11584432	.	+	1	Parent=Os06t0306500-00
Chr06	irgsp1_rep	mRNA	11586343	11587719	.	+	.	ID=Os06t0306600-01;Name=Os06t0306600-01;Locus_id=Os06g0306600;Note=Alpha/beta hydrolase fold-3 domain containing protein.;Transcript_evidence=AK070763 (DDBJ%2C Best hit);ORF_evidence=NP_001151174.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=J023066M03;Expression=AK070763;TENOR=Os06t0306600-01;KEGG=Os06t0306600-01
Chr06	irgsp1_rep	five_prime_UTR	11586343	11586433	.	+	.	Parent=Os06t0306600-01
Chr06	irgsp1_rep	CDS	11586434	11587516	.	+	0	Parent=Os06t0306600-01
Chr06	irgsp1_rep	three_prime_UTR	11587517	11587719	.	+	.	Parent=Os06t0306600-01
Chr06	irgsp1_rep	mRNA	11586368	11587737	.	+	.	ID=Os06t0306600-02;Name=Os06t0306600-02;Locus_id=Os06g0306600;Note=Alpha/beta hydrolase fold-3 domain containing protein.;Transcript_evidence=AK099262 (DDBJ%2C Best hit),AK106075 (DDBJ%2C Best hit);ORF_evidence=NP_001151174.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=J023004G05,001-206-H11;Expression=AK099262;TENOR=Os06t0306600-02;KEGG=Os06t0306600-02
Chr06	irgsp1_rep	five_prime_UTR	11586368	11586433	.	+	.	Parent=Os06t0306600-02
Chr06	irgsp1_rep	CDS	11586434	11587516	.	+	0	Parent=Os06t0306600-02
Chr06	irgsp1_rep	three_prime_UTR	11587517	11587737	.	+	.	Parent=Os06t0306600-02
Chr06	irgsp1_rep	mRNA	11656164	11656491	.	-	.	ID=Os06t0307500-00;Name=Os06t0307500-00;Locus_id=Os06g0307500;Note=Hypothetical protein.;Transcript_evidence=EU971207 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0307500-00
Chr06	irgsp1_rep	CDS	11656164	11656491	.	-	0	Parent=Os06t0307500-00
Chr06	irgsp1_rep	mRNA	11667936	11668136	.	-	.	ID=Os06t0307700-00;Name=Os06t0307700-00;Locus_id=Os06g0307700;Note=Non-protein coding transcript.;Transcript_evidence=EU942606 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0307700-00
Chr06	irgsp1_rep	exon	11667936	11668136	.	-	.	Parent=Os06t0307700-00
Chr06	irgsp1_rep	mRNA	11670344	11673430	.	-	.	ID=Os06t0307900-01;Name=Os06t0307900-01;Locus_id=Os06g0307900;Note=Hypothetical conserved gene.;Transcript_evidence=AK120750 (DDBJ%2C Best hit);ORF_evidence=Q5Z4M8 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=J023004O19;Expression=AK120750;TENOR=Os06t0307900-01;KEGG=Os06t0307900-01
Chr06	irgsp1_rep	five_prime_UTR	11673252	11673430	.	-	.	Parent=Os06t0307900-01
Chr06	irgsp1_rep	CDS	11672072	11673251	.	-	0	Parent=Os06t0307900-01
Chr06	irgsp1_rep	CDS	11671736	11671908	.	-	2	Parent=Os06t0307900-01
Chr06	irgsp1_rep	CDS	11670798	11671208	.	-	0	Parent=Os06t0307900-01
Chr06	irgsp1_rep	CDS	11670688	11670711	.	-	0	Parent=Os06t0307900-01
Chr06	irgsp1_rep	three_prime_UTR	11670667	11670687	.	-	.	Parent=Os06t0307900-01
Chr06	irgsp1_rep	three_prime_UTR	11670344	11670564	.	-	.	Parent=Os06t0307900-01
Chr06	irgsp1_rep	mRNA	11669579	11673364	.	-	.	ID=Os06t0307900-02;Name=Os06t0307900-02;Locus_id=Os06g0307900;Note=Protein of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK119309 (DDBJ%2C Best hit);ORF_evidence=B9FSX5 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=001-130-G02;Expression=AK119309;TENOR=Os06t0307900-02;KEGG=Os06t0307900-02
Chr06	irgsp1_rep	five_prime_UTR	11673252	11673364	.	-	.	Parent=Os06t0307900-02
Chr06	irgsp1_rep	CDS	11672072	11673251	.	-	0	Parent=Os06t0307900-02
Chr06	irgsp1_rep	CDS	11671736	11671908	.	-	2	Parent=Os06t0307900-02
Chr06	irgsp1_rep	CDS	11670990	11671208	.	-	0	Parent=Os06t0307900-02
Chr06	irgsp1_rep	CDS	11670860	11670892	.	-	0	Parent=Os06t0307900-02
Chr06	irgsp1_rep	three_prime_UTR	11670798	11670859	.	-	.	Parent=Os06t0307900-02
Chr06	irgsp1_rep	three_prime_UTR	11670652	11670711	.	-	.	Parent=Os06t0307900-02
Chr06	irgsp1_rep	three_prime_UTR	11669579	11670564	.	-	.	Parent=Os06t0307900-02
Chr06	irgsp1_rep	mRNA	11677059	11682089	.	+	.	ID=Os06t0308000-01;Name=Os06t0308000-01;Locus_id=Os06g0308000;Oryzabase Gene Symbol Synonym(s)=OsTIG;Oryzabase Gene Name Synonym(s)=trigger factor-like protein;Note=Similar to Trigger factor-like protein.;Transcript_evidence=AK099680 (DDBJ%2C Best hit);ORF_evidence=XP_002864384.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Biological Process: protein transport (GO:0015031);InterPro=Trigger factor (IPR005215),Trigger factor%2C C-terminal%2C bacterial (IPR008880),Trigger factor%2C ribosome-binding%2C bacterial (IPR008881);NIAS_FLcDNA=J013071B03;Oryzabase=10052;Expression=AK099680;TENOR=Os06t0308000-01;KEGG=Os06t0308000-01
Chr06	irgsp1_rep	five_prime_UTR	11677059	11677078	.	+	.	Parent=Os06t0308000-01
Chr06	irgsp1_rep	CDS	11677079	11677369	.	+	0	Parent=Os06t0308000-01
Chr06	irgsp1_rep	CDS	11677561	11677644	.	+	0	Parent=Os06t0308000-01
Chr06	irgsp1_rep	CDS	11678089	11678217	.	+	0	Parent=Os06t0308000-01
Chr06	irgsp1_rep	CDS	11678605	11678693	.	+	0	Parent=Os06t0308000-01
Chr06	irgsp1_rep	CDS	11678832	11679015	.	+	1	Parent=Os06t0308000-01
Chr06	irgsp1_rep	CDS	11679657	11679747	.	+	0	Parent=Os06t0308000-01
Chr06	irgsp1_rep	CDS	11680059	11680213	.	+	2	Parent=Os06t0308000-01
Chr06	irgsp1_rep	CDS	11680433	11680525	.	+	0	Parent=Os06t0308000-01
Chr06	irgsp1_rep	CDS	11680716	11680808	.	+	0	Parent=Os06t0308000-01
Chr06	irgsp1_rep	CDS	11680958	11681038	.	+	0	Parent=Os06t0308000-01
Chr06	irgsp1_rep	CDS	11681110	11681259	.	+	0	Parent=Os06t0308000-01
Chr06	irgsp1_rep	CDS	11681377	11681472	.	+	0	Parent=Os06t0308000-01
Chr06	irgsp1_rep	CDS	11681732	11681809	.	+	0	Parent=Os06t0308000-01
Chr06	irgsp1_rep	three_prime_UTR	11681810	11682089	.	+	.	Parent=Os06t0308000-01
Chr06	irgsp1_rep	mRNA	11684230	11687910	.	-	.	ID=Os06t0308100-01;Name=Os06t0308100-01;Locus_id=Os06g0308100;RAP-DB Gene Symbol Synonym(s)=OsIBR5;RAP-DB Gene Name Synonym(s)=indole-3-butyric acid-response 5;Oryzabase Gene Symbol Synonym(s)=OsIBR5%2C IBR5%2C OsPP85;Oryzabase Gene Name Synonym(s)=MAPK phosphatase IBR5%2C indole-3-butyric acid-response 5%2C Protein phosphatase 85;Note=MAPK phosphatase%2C Negative regulation of drought stress tolerance;Transcript_evidence=AK071054 (6bp deletion);ORF_evidence=Q5Z4M5;GO=Biological Process: protein dephosphorylation (GO:0006470),Biological Process: dephosphorylation (GO:0016311),Molecular Function: protein tyrosine phosphatase activity (GO:0004725),Molecular Function: protein tyrosine/serine/threonine phosphatase activity (GO:0008138),Molecular Function: phosphatase activity (GO:0016791);InterPro=Protein-tyrosine phosphatase-like (IPR029021),Dual specificity phosphatase%2C catalytic domain (IPR000340),Tyrosine specific protein phosphatases domain (IPR000387),Dual specificity protein phosphatase domain (IPR020422),Protein-tyrosine phosphatase%2C active site (IPR016130);NIAS_FLcDNA=J023075N16 (6bp deletion);Manual Curation=August 6%2C 2020;Literature_PMID=22525239;Oryzabase=10263;Expression=AK071054;TENOR=Os06t0308100-01;KEGG=Os06t0308100-01 (EC:3.1.3.16%2C EC:3.1.3.48);B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=cytoplasm (GO:0005737), nucleus (GO:0005634)
Chr06	irgsp1_rep	five_prime_UTR	11687743	11687910	.	-	.	Parent=Os06t0308100-01
Chr06	irgsp1_rep	CDS	11687476	11687742	.	-	0	Parent=Os06t0308100-01
Chr06	irgsp1_rep	CDS	11685897	11685996	.	-	0	Parent=Os06t0308100-01
Chr06	irgsp1_rep	CDS	11685604	11685661	.	-	2	Parent=Os06t0308100-01
Chr06	irgsp1_rep	CDS	11685409	11685515	.	-	1	Parent=Os06t0308100-01
Chr06	irgsp1_rep	CDS	11684582	11684895	.	-	2	Parent=Os06t0308100-01
Chr06	irgsp1_rep	three_prime_UTR	11684230	11684581	.	-	.	Parent=Os06t0308100-01
Chr06	irgsp1_rep	mRNA	11693031	11695275	.	+	.	ID=Os06t0308200-01;Name=Os06t0308200-01;Locus_id=Os06g0308200;Note=Similar to 60S ribosomal protein L15.;Transcript_evidence=AK058998 (DDBJ%2C Best hit);ORF_evidence=A3BB28 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L15e (IPR000439),Pentatricopeptide repeat (IPR002885),Ribosomal protein L23/L15e (IPR012678);NIAS_FLcDNA=001-020-G06;Expression=AK058998;TENOR=Os06t0308200-01;KEGG=Os06t0308200-01
Chr06	irgsp1_rep	five_prime_UTR	11693031	11693096	.	+	.	Parent=Os06t0308200-01
Chr06	irgsp1_rep	CDS	11693097	11693100	.	+	0	Parent=Os06t0308200-01
Chr06	irgsp1_rep	CDS	11693184	11693341	.	+	2	Parent=Os06t0308200-01
Chr06	irgsp1_rep	CDS	11694015	11694851	.	+	0	Parent=Os06t0308200-01
Chr06	irgsp1_rep	three_prime_UTR	11694852	11695275	.	+	.	Parent=Os06t0308200-01
Chr06	irgsp1_rep	mRNA	11696905	11701293	.	-	.	ID=Os06t0308300-01;Name=Os06t0308300-01;Locus_id=Os06g0308300;Note=Similar to 65kD microtubule associated protein.;Transcript_evidence=AK102553 (DDBJ%2C Best hit);ORF_evidence=NP_001151771.1 (RefSeq);InterPro=Microtubule-associated protein%2C MAP65/ASE1-type (IPR007145);NIAS_FLcDNA=J033097E23;TENOR=Os06t0308300-01
Chr06	irgsp1_rep	five_prime_UTR	11701030	11701293	.	-	.	Parent=Os06t0308300-01
Chr06	irgsp1_rep	five_prime_UTR	11700340	11700355	.	-	.	Parent=Os06t0308300-01
Chr06	irgsp1_rep	CDS	11700295	11700339	.	-	0	Parent=Os06t0308300-01
Chr06	irgsp1_rep	CDS	11699983	11700186	.	-	0	Parent=Os06t0308300-01
Chr06	irgsp1_rep	CDS	11699494	11699751	.	-	0	Parent=Os06t0308300-01
Chr06	irgsp1_rep	CDS	11699184	11699399	.	-	0	Parent=Os06t0308300-01
Chr06	irgsp1_rep	CDS	11698797	11698952	.	-	0	Parent=Os06t0308300-01
Chr06	irgsp1_rep	CDS	11698394	11698705	.	-	0	Parent=Os06t0308300-01
Chr06	irgsp1_rep	CDS	11698181	11698268	.	-	0	Parent=Os06t0308300-01
Chr06	irgsp1_rep	CDS	11697837	11697985	.	-	2	Parent=Os06t0308300-01
Chr06	irgsp1_rep	CDS	11697198	11697500	.	-	0	Parent=Os06t0308300-01
Chr06	irgsp1_rep	three_prime_UTR	11696905	11697197	.	-	.	Parent=Os06t0308300-01
Chr06	irgsp1_rep	mRNA	11696923	11701290	.	-	.	ID=Os06t0308300-02;Name=Os06t0308300-02;Locus_id=Os06g0308300;Note=Similar to microtubule-associated protein MAP65-1a.;Transcript_evidence=AK059211 (DDBJ%2C Best hit);ORF_evidence=NP_001151771.1 (RefSeq);InterPro=Microtubule-associated protein%2C MAP65/ASE1-type (IPR007145);NIAS_FLcDNA=001-024-B12;TENOR=Os06t0308300-02
Chr06	irgsp1_rep	five_prime_UTR	11701030	11701290	.	-	.	Parent=Os06t0308300-02
Chr06	irgsp1_rep	five_prime_UTR	11700340	11700355	.	-	.	Parent=Os06t0308300-02
Chr06	irgsp1_rep	CDS	11700295	11700339	.	-	0	Parent=Os06t0308300-02
Chr06	irgsp1_rep	CDS	11699983	11700186	.	-	0	Parent=Os06t0308300-02
Chr06	irgsp1_rep	CDS	11699494	11699751	.	-	0	Parent=Os06t0308300-02
Chr06	irgsp1_rep	CDS	11699184	11699399	.	-	0	Parent=Os06t0308300-02
Chr06	irgsp1_rep	CDS	11698797	11698952	.	-	0	Parent=Os06t0308300-02
Chr06	irgsp1_rep	CDS	11698394	11698705	.	-	0	Parent=Os06t0308300-02
Chr06	irgsp1_rep	CDS	11698181	11698268	.	-	0	Parent=Os06t0308300-02
Chr06	irgsp1_rep	CDS	11697907	11697985	.	-	2	Parent=Os06t0308300-02
Chr06	irgsp1_rep	CDS	11696923	11697006	.	-	1	Parent=Os06t0308300-02
Chr06	irgsp1_rep	mRNA	11696910	11701228	.	-	.	ID=Os06t0308300-03;Name=Os06t0308300-03;Locus_id=Os06g0308300;Note=Similar to 65kD microtubule associated protein.;Transcript_evidence=AK101549 (DDBJ%2C Best hit);ORF_evidence=NP_001151771.1 (RefSeq);InterPro=Microtubule-associated protein%2C MAP65/ASE1-type (IPR007145);NIAS_FLcDNA=J033048O08;TENOR=Os06t0308300-03
Chr06	irgsp1_rep	five_prime_UTR	11701030	11701228	.	-	.	Parent=Os06t0308300-03
Chr06	irgsp1_rep	five_prime_UTR	11700340	11700355	.	-	.	Parent=Os06t0308300-03
Chr06	irgsp1_rep	CDS	11700295	11700339	.	-	0	Parent=Os06t0308300-03
Chr06	irgsp1_rep	CDS	11699983	11700186	.	-	0	Parent=Os06t0308300-03
Chr06	irgsp1_rep	CDS	11699494	11699751	.	-	0	Parent=Os06t0308300-03
Chr06	irgsp1_rep	CDS	11699184	11699399	.	-	0	Parent=Os06t0308300-03
Chr06	irgsp1_rep	CDS	11698797	11698952	.	-	0	Parent=Os06t0308300-03
Chr06	irgsp1_rep	CDS	11698394	11698705	.	-	0	Parent=Os06t0308300-03
Chr06	irgsp1_rep	CDS	11698181	11698268	.	-	0	Parent=Os06t0308300-03
Chr06	irgsp1_rep	CDS	11697837	11697985	.	-	2	Parent=Os06t0308300-03
Chr06	irgsp1_rep	CDS	11697198	11697500	.	-	0	Parent=Os06t0308300-03
Chr06	irgsp1_rep	three_prime_UTR	11696910	11697197	.	-	.	Parent=Os06t0308300-03
Chr06	irgsp1_rep	mRNA	11697235	11699410	.	+	.	ID=Os06t0308550-00;Name=Os06t0308550-00;Locus_id=Os06g0308550;Note=Hypothetical protein.;Transcript_evidence=tplb0026b06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0308550-00
Chr06	irgsp1_rep	five_prime_UTR	11697235	11697448	.	+	.	Parent=Os06t0308550-00
Chr06	irgsp1_rep	CDS	11697449	11697485	.	+	0	Parent=Os06t0308550-00
Chr06	irgsp1_rep	CDS	11697827	11698023	.	+	2	Parent=Os06t0308550-00
Chr06	irgsp1_rep	three_prime_UTR	11698024	11698146	.	+	.	Parent=Os06t0308550-00
Chr06	irgsp1_rep	three_prime_UTR	11698297	11698737	.	+	.	Parent=Os06t0308550-00
Chr06	irgsp1_rep	three_prime_UTR	11698823	11698930	.	+	.	Parent=Os06t0308550-00
Chr06	irgsp1_rep	three_prime_UTR	11699160	11699410	.	+	.	Parent=Os06t0308550-00
Chr06	irgsp1_rep	mRNA	11712594	11717062	.	+	.	ID=Os06t0308800-01;Name=Os06t0308800-01;Locus_id=Os06g0308800;Note=Protein of unknown function DUF605 family protein.;Transcript_evidence=AK066935 (DDBJ%2C Best hit);ORF_evidence=F2DAX9 (UniProt);InterPro=Protein of unknown function DUF605 (IPR006745),Vacuolar protein sorting-associate Vta1%2C N-terminal (IPR023175);NIAS_FLcDNA=J013093K12;Expression=AK066935;TENOR=Os06t0308800-01;KEGG=Os06t0308800-01
Chr06	irgsp1_rep	five_prime_UTR	11712594	11712781	.	+	.	Parent=Os06t0308800-01
Chr06	irgsp1_rep	CDS	11712782	11712875	.	+	0	Parent=Os06t0308800-01
Chr06	irgsp1_rep	CDS	11713010	11713110	.	+	2	Parent=Os06t0308800-01
Chr06	irgsp1_rep	CDS	11714190	11714299	.	+	0	Parent=Os06t0308800-01
Chr06	irgsp1_rep	CDS	11714395	11714470	.	+	1	Parent=Os06t0308800-01
Chr06	irgsp1_rep	CDS	11714655	11714798	.	+	0	Parent=Os06t0308800-01
Chr06	irgsp1_rep	CDS	11715675	11715746	.	+	0	Parent=Os06t0308800-01
Chr06	irgsp1_rep	CDS	11715844	11716713	.	+	0	Parent=Os06t0308800-01
Chr06	irgsp1_rep	three_prime_UTR	11716714	11717062	.	+	.	Parent=Os06t0308800-01
Chr06	irgsp1_rep	mRNA	11719034	11722831	.	-	.	ID=Os06t0308900-01;Name=Os06t0308900-01;Locus_id=Os06g0308900;Note=Similar to DHHC zinc finger domain containing protein.;Transcript_evidence=AK069264 (DDBJ%2C Best hit);ORF_evidence=NP_001147996.1 (RefSeq);NIAS_FLcDNA=J023011B03;TENOR=Os06t0308900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	11722721	11722831	.	-	.	Parent=Os06t0308900-01
Chr06	irgsp1_rep	CDS	11722697	11722720	.	-	0	Parent=Os06t0308900-01
Chr06	irgsp1_rep	CDS	11721304	11721564	.	-	0	Parent=Os06t0308900-01
Chr06	irgsp1_rep	three_prime_UTR	11720910	11721303	.	-	.	Parent=Os06t0308900-01
Chr06	irgsp1_rep	three_prime_UTR	11720317	11720810	.	-	.	Parent=Os06t0308900-01
Chr06	irgsp1_rep	three_prime_UTR	11719034	11719825	.	-	.	Parent=Os06t0308900-01
Chr06	irgsp1_rep	mRNA	11726018	11734594	.	-	.	ID=Os06t0309000-01;Name=Os06t0309000-01;Locus_id=Os06g0309000;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK121021 (DDBJ%2C Best hit);ORF_evidence=B9FSX7 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Bromo adjacent homology (BAH) domain (IPR001025),Zinc finger%2C RING-type (IPR001841),Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-finger (IPR019787);NIAS_FLcDNA=J023049E24;Expression=AK121021;TENOR=Os06t0309000-01;KEGG=Os06t0309000-01
Chr06	irgsp1_rep	five_prime_UTR	11734410	11734594	.	-	.	Parent=Os06t0309000-01
Chr06	irgsp1_rep	CDS	11734086	11734409	.	-	0	Parent=Os06t0309000-01
Chr06	irgsp1_rep	CDS	11731966	11732290	.	-	0	Parent=Os06t0309000-01
Chr06	irgsp1_rep	CDS	11729098	11730131	.	-	2	Parent=Os06t0309000-01
Chr06	irgsp1_rep	CDS	11728812	11728925	.	-	0	Parent=Os06t0309000-01
Chr06	irgsp1_rep	CDS	11728325	11728467	.	-	0	Parent=Os06t0309000-01
Chr06	irgsp1_rep	CDS	11726357	11726405	.	-	1	Parent=Os06t0309000-01
Chr06	irgsp1_rep	three_prime_UTR	11726018	11726356	.	-	.	Parent=Os06t0309000-01
Chr06	irgsp1_rep	mRNA	11737149	11741013	.	-	.	ID=Os06t0309200-01;Name=Os06t0309200-01;Locus_id=Os06g0309200;Note=Similar to lipid binding protein.;Transcript_evidence=AK103132 (DDBJ%2C Best hit);ORF_evidence=NP_001150350.1 (RefSeq);GO=Molecular Function: lipid binding (GO:0008289);InterPro=Bactericidal permeability-increasing protein%2C alpha/beta domain (IPR017943);NIAS_FLcDNA=J033120D02;TENOR=Os06t0309200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	11740921	11741013	.	-	.	Parent=Os06t0309200-01
Chr06	irgsp1_rep	CDS	11740471	11740920	.	-	0	Parent=Os06t0309200-01
Chr06	irgsp1_rep	three_prime_UTR	11739676	11740470	.	-	.	Parent=Os06t0309200-01
Chr06	irgsp1_rep	three_prime_UTR	11738773	11739118	.	-	.	Parent=Os06t0309200-01
Chr06	irgsp1_rep	three_prime_UTR	11738418	11738666	.	-	.	Parent=Os06t0309200-01
Chr06	irgsp1_rep	three_prime_UTR	11737738	11737863	.	-	.	Parent=Os06t0309200-01
Chr06	irgsp1_rep	three_prime_UTR	11737149	11737504	.	-	.	Parent=Os06t0309200-01
Chr06	irgsp1_rep	mRNA	11744988	11745940	.	-	.	ID=Os06t0309400-00;Name=Os06t0309400-00;Locus_id=Os06g0309400;Note=Similar to OSIGBa0076I14.10 protein.;Transcript_evidence=AK364929 (DDBJ);ORF_evidence=Q01L82 (UniProt);TENOR=Os06t0309400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	11745484	11745940	.	-	.	Parent=Os06t0309400-00
Chr06	irgsp1_rep	CDS	11745268	11745483	.	-	0	Parent=Os06t0309400-00
Chr06	irgsp1_rep	three_prime_UTR	11744988	11745267	.	-	.	Parent=Os06t0309400-00
Chr06	irgsp1_rep	mRNA	11752670	11753202	.	-	.	ID=Os06t0309550-00;Name=Os06t0309550-00;Locus_id=Os06g0309550;Note=Hypothetical gene.;Transcript_evidence=CU406696 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;TENOR=Os06t0309550-00;KEGG=Os06t0309550-00
Chr06	irgsp1_rep	five_prime_UTR	11753201	11753202	.	-	.	Parent=Os06t0309550-00
Chr06	irgsp1_rep	CDS	11752856	11753200	.	-	0	Parent=Os06t0309550-00
Chr06	irgsp1_rep	three_prime_UTR	11752670	11752855	.	-	.	Parent=Os06t0309550-00
Chr06	irgsp1_rep	mRNA	11781838	11789081	.	-	.	ID=Os06t0310200-01;Name=Os06t0310200-01;Locus_id=Os06g0310200;Note=Similar to OSIGBa0076I14.10 protein.;Transcript_evidence=AK288847 (DDBJ%2C Best hit);ORF_evidence=Q01L82 (UniProt);NIAS_FLcDNA=J090075E24;TENOR=Os06t0310200-01;KEGG=Os06t0310200-01
Chr06	irgsp1_rep	five_prime_UTR	11788778	11789081	.	-	.	Parent=Os06t0310200-01
Chr06	irgsp1_rep	five_prime_UTR	11787800	11787880	.	-	.	Parent=Os06t0310200-01
Chr06	irgsp1_rep	CDS	11787659	11787799	.	-	0	Parent=Os06t0310200-01
Chr06	irgsp1_rep	CDS	11787424	11787565	.	-	0	Parent=Os06t0310200-01
Chr06	irgsp1_rep	CDS	11787160	11787299	.	-	2	Parent=Os06t0310200-01
Chr06	irgsp1_rep	CDS	11786658	11786855	.	-	0	Parent=Os06t0310200-01
Chr06	irgsp1_rep	CDS	11786356	11786553	.	-	0	Parent=Os06t0310200-01
Chr06	irgsp1_rep	CDS	11786229	11786264	.	-	0	Parent=Os06t0310200-01
Chr06	irgsp1_rep	CDS	11785978	11786063	.	-	0	Parent=Os06t0310200-01
Chr06	irgsp1_rep	CDS	11785742	11785792	.	-	1	Parent=Os06t0310200-01
Chr06	irgsp1_rep	CDS	11785252	11785360	.	-	1	Parent=Os06t0310200-01
Chr06	irgsp1_rep	CDS	11785054	11785159	.	-	0	Parent=Os06t0310200-01
Chr06	irgsp1_rep	CDS	11784782	11784879	.	-	2	Parent=Os06t0310200-01
Chr06	irgsp1_rep	CDS	11784486	11784707	.	-	0	Parent=Os06t0310200-01
Chr06	irgsp1_rep	three_prime_UTR	11784416	11784485	.	-	.	Parent=Os06t0310200-01
Chr06	irgsp1_rep	three_prime_UTR	11783846	11784277	.	-	.	Parent=Os06t0310200-01
Chr06	irgsp1_rep	three_prime_UTR	11783235	11783754	.	-	.	Parent=Os06t0310200-01
Chr06	irgsp1_rep	three_prime_UTR	11783010	11783132	.	-	.	Parent=Os06t0310200-01
Chr06	irgsp1_rep	three_prime_UTR	11782449	11782535	.	-	.	Parent=Os06t0310200-01
Chr06	irgsp1_rep	three_prime_UTR	11781838	11782366	.	-	.	Parent=Os06t0310200-01
Chr06	irgsp1_rep	mRNA	11795529	11796067	.	-	.	ID=Os06t0310350-00;Name=Os06t0310350-00;Locus_id=Os06g0310350;Note=Hypothetical gene.;Transcript_evidence=CU406696 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;TENOR=Os06t0310350-00;KEGG=Os06t0310350-00
Chr06	irgsp1_rep	five_prime_UTR	11796066	11796067	.	-	.	Parent=Os06t0310350-00
Chr06	irgsp1_rep	CDS	11795831	11796065	.	-	0	Parent=Os06t0310350-00
Chr06	irgsp1_rep	CDS	11795715	11795824	.	-	2	Parent=Os06t0310350-00
Chr06	irgsp1_rep	three_prime_UTR	11795529	11795714	.	-	.	Parent=Os06t0310350-00
Chr06	irgsp1_rep	mRNA	11840490	11844303	.	+	.	ID=Os06t0310801-01;Name=Os06t0310801-01;Locus_id=Os06g0310801;Note=Hypothetical gene.;Transcript_evidence=AK289174 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100020B21;TENOR=Os06t0310801-01;KEGG=Os06t0310801-01
Chr06	irgsp1_rep	five_prime_UTR	11840490	11841736	.	+	.	Parent=Os06t0310801-01
Chr06	irgsp1_rep	CDS	11841737	11841824	.	+	0	Parent=Os06t0310801-01
Chr06	irgsp1_rep	CDS	11841948	11842016	.	+	2	Parent=Os06t0310801-01
Chr06	irgsp1_rep	CDS	11842599	11842655	.	+	2	Parent=Os06t0310801-01
Chr06	irgsp1_rep	CDS	11842796	11842852	.	+	2	Parent=Os06t0310801-01
Chr06	irgsp1_rep	CDS	11843001	11843020	.	+	2	Parent=Os06t0310801-01
Chr06	irgsp1_rep	three_prime_UTR	11843021	11843060	.	+	.	Parent=Os06t0310801-01
Chr06	irgsp1_rep	three_prime_UTR	11844013	11844303	.	+	.	Parent=Os06t0310801-01
Chr06	irgsp1_rep	mRNA	11840611	11844171	.	-	.	ID=Os06t0311000-00;Name=Os06t0311000-00;Locus_id=Os06g0311000;Note=Hypothetical conserved gene.;Transcript_evidence=EU972418 (DDBJ);ORF_evidence=Q5Z7Y3 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyltransferase AER61%2C uncharacterised (IPR007657);Oryzabase=15263;TENOR=Os06t0311000-00;KEGG=Os06t0311000-00
Chr06	irgsp1_rep	five_prime_UTR	11844137	11844171	.	-	.	Parent=Os06t0311000-00
Chr06	irgsp1_rep	CDS	11844001	11844136	.	-	0	Parent=Os06t0311000-00
Chr06	irgsp1_rep	CDS	11842796	11842852	.	-	2	Parent=Os06t0311000-00
Chr06	irgsp1_rep	CDS	11841948	11842016	.	-	2	Parent=Os06t0311000-00
Chr06	irgsp1_rep	CDS	11840611	11841818	.	-	2	Parent=Os06t0311000-00
Chr06	irgsp1_rep	mRNA	11867820	11870616	.	+	.	ID=Os06t0311300-01;Name=Os06t0311300-01;Locus_id=Os06g0311300;Note=Seven-in-absentia protein%2C sina domain containing protein.;Transcript_evidence=AK288450 (DDBJ%2C Best hit);ORF_evidence=NP_001057483.2 (RefSeq);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Biological Process: multicellular organismal development (GO:0007275),Biological Process: protein ubiquitination (GO:0016567),Cellular Component: nucleus (GO:0005634),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Seven-in-absentia protein%2C sina (IPR004162),TRAF-like (IPR008974),Zinc finger%2C SIAH-type (IPR013010),Seven In Absentia Homolog-type (IPR013323),Seven-in-absentia protein%2C TRAF-like domain (IPR018121);NIAS_FLcDNA=J090034O15;TENOR=Os06t0311300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	11867820	11869760	.	+	.	Parent=Os06t0311300-01
Chr06	irgsp1_rep	CDS	11869761	11870513	.	+	0	Parent=Os06t0311300-01
Chr06	irgsp1_rep	three_prime_UTR	11870514	11870616	.	+	.	Parent=Os06t0311300-01
Chr06	irgsp1_rep	mRNA	11877604	11881764	.	+	.	ID=Os06t0311600-01;Name=Os06t0311600-01;Locus_id=Os06g0311600;Note=Similar to Mannan endo-1%2C4-beta-mannosidase 6.;Transcript_evidence=AK242683 (DDBJ%2C Best hit);ORF_evidence=Q0DCM5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 5 (IPR001547),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J090033F21;TENOR=Os06t0311600-01;KEGG=Os06t0311600-01
Chr06	irgsp1_rep	five_prime_UTR	11877604	11877659	.	+	.	Parent=Os06t0311600-01
Chr06	irgsp1_rep	CDS	11877660	11878049	.	+	0	Parent=Os06t0311600-01
Chr06	irgsp1_rep	CDS	11879394	11879591	.	+	0	Parent=Os06t0311600-01
Chr06	irgsp1_rep	CDS	11880331	11880453	.	+	0	Parent=Os06t0311600-01
Chr06	irgsp1_rep	CDS	11880531	11880742	.	+	0	Parent=Os06t0311600-01
Chr06	irgsp1_rep	CDS	11880823	11881222	.	+	1	Parent=Os06t0311600-01
Chr06	irgsp1_rep	three_prime_UTR	11881223	11881764	.	+	.	Parent=Os06t0311600-01
Chr06	irgsp1_rep	mRNA	11882030	11882977	.	+	.	ID=Os06t0311700-00;Name=Os06t0311700-00;Locus_id=Os06g0311700;Note=Hypothetical conserved gene.;Transcript_evidence=CT836247 (DDBJ%2C Best hit);ORF_evidence=Q8GRI9 (UniProt);TENOR=Os06t0311700-00;KEGG=Os06t0311700-00
Chr06	irgsp1_rep	five_prime_UTR	11882030	11882355	.	+	.	Parent=Os06t0311700-00
Chr06	irgsp1_rep	CDS	11882356	11882478	.	+	0	Parent=Os06t0311700-00
Chr06	irgsp1_rep	three_prime_UTR	11882479	11882977	.	+	.	Parent=Os06t0311700-00
Chr06	irgsp1_rep	mRNA	11887860	11890159	.	-	.	ID=Os06t0311800-00;Name=Os06t0311800-00;Locus_id=Os06g0311800;Oryzabase Gene Name Synonym(s)=SABATH methyltransferase Group A2;Note=Similar to Jasmonate O-methyltransferase.;Transcript_evidence=ab initio prediction;ORF_evidence=B6SZU3 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=SAM dependent carboxyl methyltransferase (IPR005299);Oryzabase=23383;TENOR=Os06t0311800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	11889752	11890159	.	-	0	Parent=Os06t0311800-00
Chr06	irgsp1_rep	CDS	11888666	11888935	.	-	0	Parent=Os06t0311800-00
Chr06	irgsp1_rep	CDS	11887860	11888231	.	-	0	Parent=Os06t0311800-00
Chr06	irgsp1_rep	mRNA	11959534	11961068	.	+	.	ID=Os06t0312900-01;Name=Os06t0312900-01;Locus_id=Os06g0312900;Note=Conserved hypothetical protein.;Transcript_evidence=AK069999 (DDBJ%2C Best hit);ORF_evidence=Q6K7G1 (UniProt);NIAS_FLcDNA=J023038L07;Expression=AK069999;TENOR=Os06t0312900-01;KEGG=Os06t0312900-01
Chr06	irgsp1_rep	five_prime_UTR	11959534	11959576	.	+	.	Parent=Os06t0312900-01
Chr06	irgsp1_rep	five_prime_UTR	11959660	11959813	.	+	.	Parent=Os06t0312900-01
Chr06	irgsp1_rep	CDS	11959814	11959832	.	+	0	Parent=Os06t0312900-01
Chr06	irgsp1_rep	CDS	11959952	11960052	.	+	2	Parent=Os06t0312900-01
Chr06	irgsp1_rep	CDS	11960778	11960840	.	+	0	Parent=Os06t0312900-01
Chr06	irgsp1_rep	three_prime_UTR	11960841	11961068	.	+	.	Parent=Os06t0312900-01
Chr06	irgsp1_rep	mRNA	11964978	11965357	.	-	.	ID=Os06t0312950-00;Name=Os06t0312950-00;Locus_id=Os06g0312950;Note=Hypothetical protein.;Transcript_evidence=EU946393 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0312950-00
Chr06	irgsp1_rep	five_prime_UTR	11965357	11965357	.	-	.	Parent=Os06t0312950-00
Chr06	irgsp1_rep	CDS	11964978	11965356	.	-	0	Parent=Os06t0312950-00
Chr06	irgsp1_rep	mRNA	11968949	11969182	.	+	.	ID=Os06t0313000-00;Name=Os06t0313000-00;Locus_id=Os06g0313000;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5Z523 (UniProt);TENOR=Os06t0313000-00
Chr06	irgsp1_rep	CDS	11968949	11969182	.	+	0	Parent=Os06t0313000-00
Chr06	irgsp1_rep	mRNA	11973750	11976290	.	-	.	ID=Os06t0313320-00;Name=Os06t0313320-00;Locus_id=Os06g0313320;Oryzabase Gene Name Synonym(s)=SABATH methyltransferase Group A2;Note=Similar to Jasmonate O-methyltransferase.;Transcript_evidence=BT041195 (DDBJ);ORF_evidence=B6SZU3 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=SAM dependent carboxyl methyltransferase (IPR005299);Oryzabase=23384;TENOR=Os06t0313320-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	11975853	11976290	.	-	0	Parent=Os06t0313320-00
Chr06	irgsp1_rep	CDS	11974814	11975083	.	-	0	Parent=Os06t0313320-00
Chr06	irgsp1_rep	CDS	11973750	11974121	.	-	0	Parent=Os06t0313320-00
Chr06	irgsp1_rep	mRNA	11988794	11989718	.	-	.	ID=Os06t0313440-00;Name=Os06t0313440-00;Locus_id=Os06g0313440;Oryzabase Gene Name Synonym(s)=SABATH methyltransferase Group A1;Note=SAM dependent carboxyl methyltransferase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3BB44 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=SAM dependent carboxyl methyltransferase (IPR005299);Oryzabase=23379;TENOR=Os06t0313440-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	11989395	11989718	.	-	0	Parent=Os06t0313440-00
Chr06	irgsp1_rep	CDS	11988794	11989069	.	-	0	Parent=Os06t0313440-00
Chr06	irgsp1_rep	mRNA	12050705	12052390	.	-	.	ID=Os06t0314000-01;Name=Os06t0314000-01;Locus_id=Os06g0314000;Note=Protein of unknown function DUF827%2C plant domain containing protein.;Transcript_evidence=AK064443 (DDBJ%2C Best hit);ORF_evidence=A3BB45 (UniProt);InterPro=Protein of unknown function DUF827%2C plant (IPR008545);NIAS_FLcDNA=002-110-E08;TENOR=Os06t0314000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	12052390	12052390	.	-	.	Parent=Os06t0314000-01
Chr06	irgsp1_rep	CDS	12050869	12052389	.	-	0	Parent=Os06t0314000-01
Chr06	irgsp1_rep	three_prime_UTR	12050705	12050868	.	-	.	Parent=Os06t0314000-01
Chr06	irgsp1_rep	mRNA	12054982	12056084	.	-	.	ID=Os06t0314100-01;Name=Os06t0314100-01;Locus_id=Os06g0314100;Note=Conserved hypothetical protein.;Transcript_evidence=AK287687 (DDBJ%2C Best hit);ORF_evidence=NP_001057491.1 (RefSeq);NIAS_FLcDNA=J065127K17;TENOR=Os06t0314100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	12056083	12056084	.	-	.	Parent=Os06t0314100-01
Chr06	irgsp1_rep	CDS	12055696	12056082	.	-	0	Parent=Os06t0314100-01
Chr06	irgsp1_rep	three_prime_UTR	12054982	12055695	.	-	.	Parent=Os06t0314100-01
Chr06	irgsp1_rep	mRNA	12062651	12065269	.	+	.	ID=Os06t0314300-01;Name=Os06t0314300-01;Locus_id=Os06g0314300;Note=Conserved hypothetical protein.;Transcript_evidence=AK101779 (DDBJ%2C Best hit);ORF_evidence=B9FSY3 (UniProt);NIAS_FLcDNA=J033064O20;TENOR=Os06t0314300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	12062651	12062859	.	+	.	Parent=Os06t0314300-01
Chr06	irgsp1_rep	CDS	12062860	12062990	.	+	0	Parent=Os06t0314300-01
Chr06	irgsp1_rep	CDS	12063173	12063464	.	+	1	Parent=Os06t0314300-01
Chr06	irgsp1_rep	three_prime_UTR	12063465	12065269	.	+	.	Parent=Os06t0314300-01
Chr06	irgsp1_rep	mRNA	12062776	12070739	.	-	.	ID=Os06t0314400-00;Name=Os06t0314400-00;Locus_id=Os06g0314400;Note=Hypothetical conserved gene.;Transcript_evidence=tplb0004n13 (Wheat FLcDNA);ORF_evidence=Q5Z4A3 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os06t0314400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	12069024	12070739	.	-	0	Parent=Os06t0314400-00
Chr06	irgsp1_rep	three_prime_UTR	12067958	12069023	.	-	.	Parent=Os06t0314400-00
Chr06	irgsp1_rep	three_prime_UTR	12067354	12067532	.	-	.	Parent=Os06t0314400-00
Chr06	irgsp1_rep	three_prime_UTR	12062776	12063036	.	-	.	Parent=Os06t0314400-00
Chr06	irgsp1_rep	mRNA	12067315	12069685	.	+	.	ID=Os06t0314425-00;Name=Os06t0314425-00;Locus_id=Os06g0314425;Note=Hypothetical protein.;Transcript_evidence=BT085076 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0314425-00
Chr06	irgsp1_rep	five_prime_UTR	12067315	12067446	.	+	.	Parent=Os06t0314425-00
Chr06	irgsp1_rep	CDS	12067447	12067537	.	+	0	Parent=Os06t0314425-00
Chr06	irgsp1_rep	CDS	12067931	12068229	.	+	2	Parent=Os06t0314425-00
Chr06	irgsp1_rep	three_prime_UTR	12068230	12068532	.	+	.	Parent=Os06t0314425-00
Chr06	irgsp1_rep	three_prime_UTR	12068717	12069685	.	+	.	Parent=Os06t0314425-00
Chr06	irgsp1_rep	mRNA	12076313	12079453	.	-	.	ID=Os06t0314501-01;Name=Os06t0314501-01;Locus_id=Os06g0314501;Note=Conserved hypothetical protein.;Transcript_evidence=AK241095 (DDBJ%2C Best hit);ORF_evidence=NP_001174748.1 (RefSeq);NIAS_FLcDNA=J065076J12;TENOR=Os06t0314501-01;KEGG=Os06t0314501-01
Chr06	irgsp1_rep	five_prime_UTR	12079329	12079453	.	-	.	Parent=Os06t0314501-01
Chr06	irgsp1_rep	five_prime_UTR	12077331	12077405	.	-	.	Parent=Os06t0314501-01
Chr06	irgsp1_rep	CDS	12076482	12077330	.	-	0	Parent=Os06t0314501-01
Chr06	irgsp1_rep	three_prime_UTR	12076313	12076481	.	-	.	Parent=Os06t0314501-01
Chr06	irgsp1_rep	mRNA	12082449	12088593	.	-	.	ID=Os06t0314600-01;Name=Os06t0314600-01;Locus_id=Os06g0314600;CGSNL Gene Symbol=JMT1;CGSNL Gene Name=JASMONIC ACID CARBOXY METHYL TRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=JMT-1%2C OsJMT-1%2C OsJMT1;Oryzabase Gene Name Synonym(s)=JA carboxy methyl transferase 1%2C jasmonic acid carboxy methyl transferase 1;Note=SAM dependent carboxyl methyltransferase family protein.;Transcript_evidence=AK067321 (DDBJ%2C Best hit);ORF_evidence=A3BB49 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=SAM dependent carboxyl methyltransferase (IPR005299);NIAS_FLcDNA=J013105P13;Oryzabase=22010;Expression=AK067321;TENOR=Os06t0314600-01;KEGG=Os06t0314600-01
Chr06	irgsp1_rep	five_prime_UTR	12088488	12088593	.	-	.	Parent=Os06t0314600-01
Chr06	irgsp1_rep	five_prime_UTR	12083940	12083950	.	-	.	Parent=Os06t0314600-01
Chr06	irgsp1_rep	CDS	12083547	12083939	.	-	0	Parent=Os06t0314600-01
Chr06	irgsp1_rep	CDS	12083182	12083448	.	-	0	Parent=Os06t0314600-01
Chr06	irgsp1_rep	CDS	12082584	12082940	.	-	0	Parent=Os06t0314600-01
Chr06	irgsp1_rep	three_prime_UTR	12082449	12082583	.	-	.	Parent=Os06t0314600-01
Chr06	irgsp1_rep	mRNA	12115575	12117309	.	-	.	ID=Os06t0315000-00;Name=Os06t0315000-00;Locus_id=Os06g0315000;Oryzabase Gene Name Synonym(s)=SABATH methyltransferase Group A1;Note=SAM dependent carboxyl methyltransferase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001174749.1 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=SAM dependent carboxyl methyltransferase (IPR005299);Oryzabase=23380;TENOR=Os06t0315000-00
Chr06	irgsp1_rep	CDS	12116932	12117309	.	-	0	Parent=Os06t0315000-00
Chr06	irgsp1_rep	CDS	12116570	12116836	.	-	0	Parent=Os06t0315000-00
Chr06	irgsp1_rep	CDS	12115575	12115916	.	-	0	Parent=Os06t0315000-00
Chr06	irgsp1_rep	mRNA	12141295	12145414	.	-	.	ID=Os06t0315300-00;Name=Os06t0315300-00;Locus_id=Os06g0315300;Oryzabase Gene Name Synonym(s)=SABATH methyltransferase Group A1;Note=SAM dependent carboxyl methyltransferase domain containing protein.;Transcript_evidence=FP095727 (DDBJ);ORF_evidence=Q5Z494 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=SAM dependent carboxyl methyltransferase (IPR005299);Oryzabase=23381;TENOR=Os06t0315300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	12145412	12145414	.	-	.	Parent=Os06t0315300-00
Chr06	irgsp1_rep	CDS	12145337	12145411	.	-	0	Parent=Os06t0315300-00
Chr06	irgsp1_rep	CDS	12142530	12142925	.	-	0	Parent=Os06t0315300-00
Chr06	irgsp1_rep	CDS	12142146	12142412	.	-	0	Parent=Os06t0315300-00
Chr06	irgsp1_rep	CDS	12141324	12141665	.	-	0	Parent=Os06t0315300-00
Chr06	irgsp1_rep	three_prime_UTR	12141295	12141323	.	-	.	Parent=Os06t0315300-00
Chr06	irgsp1_rep	mRNA	12141448	12142849	.	+	.	ID=Os06t0315450-00;Name=Os06t0315450-00;Locus_id=Os06g0315450;Note=Non-protein coding transcript.;Transcript_evidence=EU948738 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0315450-00
Chr06	irgsp1_rep	exon	12141448	12141638	.	+	.	Parent=Os06t0315450-00
Chr06	irgsp1_rep	exon	12142179	12142435	.	+	.	Parent=Os06t0315450-00
Chr06	irgsp1_rep	exon	12142518	12142849	.	+	.	Parent=Os06t0315450-00
Chr06	irgsp1_rep	mRNA	12182089	12182926	.	-	.	ID=Os06t0315601-00;Name=Os06t0315601-00;Locus_id=Os06g0315601;Note=Hypothetical conserved gene.;Transcript_evidence=AK066012 (DDBJ%2C Secondary hit);ORF_evidence=B9FSY6 (UniProt);Expression=AK066012;TENOR=Os06t0315601-00;KEGG=Os06t0315601-00
Chr06	irgsp1_rep	five_prime_UTR	12182895	12182926	.	-	.	Parent=Os06t0315601-00
Chr06	irgsp1_rep	CDS	12182637	12182894	.	-	0	Parent=Os06t0315601-00
Chr06	irgsp1_rep	three_prime_UTR	12182089	12182636	.	-	.	Parent=Os06t0315601-00
Chr06	irgsp1_rep	mRNA	12186509	12190658	.	+	.	ID=Os06t0315900-01;Name=Os06t0315900-01;Locus_id=Os06g0315900;Note=Transcription elongation factor%2C TFIIS/CRSP70%2C N-terminal%2C sub-type domain containing protein.;Transcript_evidence=AK100030 (DDBJ%2C Best hit);ORF_evidence=B9FSY7 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Transcription elongation factor%2C TFIIS/CRSP70%2C N-terminal%2C sub-type (IPR003617),Transcription factor IIS%2C N-terminal (IPR017923);NIAS_FLcDNA=J013147L20;TENOR=Os06t0315900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	12186509	12186803	.	+	.	Parent=Os06t0315900-01
Chr06	irgsp1_rep	CDS	12186804	12187181	.	+	0	Parent=Os06t0315900-01
Chr06	irgsp1_rep	CDS	12187263	12187331	.	+	0	Parent=Os06t0315900-01
Chr06	irgsp1_rep	CDS	12187424	12187506	.	+	0	Parent=Os06t0315900-01
Chr06	irgsp1_rep	CDS	12187608	12187647	.	+	1	Parent=Os06t0315900-01
Chr06	irgsp1_rep	three_prime_UTR	12187648	12187660	.	+	.	Parent=Os06t0315900-01
Chr06	irgsp1_rep	three_prime_UTR	12188550	12188594	.	+	.	Parent=Os06t0315900-01
Chr06	irgsp1_rep	three_prime_UTR	12189437	12189599	.	+	.	Parent=Os06t0315900-01
Chr06	irgsp1_rep	three_prime_UTR	12190258	12190658	.	+	.	Parent=Os06t0315900-01
Chr06	irgsp1_rep	mRNA	12194751	12195839	.	+	.	ID=Os06t0316000-01;Name=Os06t0316000-01;Locus_id=Os06g0316000;RAP-DB Gene Symbol Synonym(s)=Os2H16;Oryzabase Gene Symbol Synonym(s)=Os2H16%2C 2H16;Note=Short-chain peptide-encoding gene%2C Disease resistance%2C Drought tolerance;Transcript_evidence=AK058338;ORF_evidence=Q5Z4Q8;NIAS_FLcDNA=001-014-D05;Manual Curation=March 4%2C 2020;Literature_PMID=28869785,DOI:10.1007/s11240-013-0374-3;Oryzabase=21538;Expression=AK058338;TENOR=Os06t0316000-01;KEGG=Os06t0316000-01
Chr06	irgsp1_rep	five_prime_UTR	12194751	12194810	.	+	.	Parent=Os06t0316000-01
Chr06	irgsp1_rep	CDS	12194811	12194913	.	+	0	Parent=Os06t0316000-01
Chr06	irgsp1_rep	CDS	12195638	12195780	.	+	2	Parent=Os06t0316000-01
Chr06	irgsp1_rep	three_prime_UTR	12195781	12195839	.	+	.	Parent=Os06t0316000-01
Chr06	irgsp1_rep	mRNA	12197494	12200579	.	+	.	ID=Os06t0316100-01;Name=Os06t0316100-01;Locus_id=Os06g0316100;Note=Similar to adhesin FhaB.;Transcript_evidence=AK119646 (DDBJ%2C Best hit);ORF_evidence=NP_001151197.1 (RefSeq);NIAS_FLcDNA=002-130-G06;Expression=AK119646;TENOR=Os06t0316100-01;KEGG=Os06t0316100-01
Chr06	irgsp1_rep	five_prime_UTR	12197494	12197678	.	+	.	Parent=Os06t0316100-01
Chr06	irgsp1_rep	CDS	12197679	12198476	.	+	0	Parent=Os06t0316100-01
Chr06	irgsp1_rep	CDS	12199970	12200037	.	+	0	Parent=Os06t0316100-01
Chr06	irgsp1_rep	CDS	12200134	12200182	.	+	1	Parent=Os06t0316100-01
Chr06	irgsp1_rep	three_prime_UTR	12200183	12200579	.	+	.	Parent=Os06t0316100-01
Chr06	irgsp1_rep	mRNA	12197528	12200651	.	+	.	ID=Os06t0316100-02;Name=Os06t0316100-02;Locus_id=Os06g0316100;Note=Similar to adhesin FhaB.;Transcript_evidence=AK105260 (DDBJ%2C Best hit);ORF_evidence=NP_001151197.1 (RefSeq);NIAS_FLcDNA=001-115-A01;Expression=AK105260;TENOR=Os06t0316100-02;KEGG=Os06t0316100-02
Chr06	irgsp1_rep	five_prime_UTR	12197528	12197678	.	+	.	Parent=Os06t0316100-02
Chr06	irgsp1_rep	CDS	12197679	12198476	.	+	0	Parent=Os06t0316100-02
Chr06	irgsp1_rep	CDS	12199970	12200037	.	+	0	Parent=Os06t0316100-02
Chr06	irgsp1_rep	CDS	12200134	12200182	.	+	1	Parent=Os06t0316100-02
Chr06	irgsp1_rep	three_prime_UTR	12200183	12200651	.	+	.	Parent=Os06t0316100-02
Chr06	irgsp1_rep	mRNA	12212221	12213070	.	+	.	ID=Os06t0316300-00;Name=Os06t0316300-00;Locus_id=Os06g0316300;Note=Glycine rich family protein.;Transcript_evidence=CT836289 (DDBJ%2C Best hit);ORF_evidence=NP_001174751.1 (RefSeq);InterPro=Glycine rich protein (IPR010800);TENOR=Os06t0316300-00;KEGG=Os06t0316300-00
Chr06	irgsp1_rep	five_prime_UTR	12212221	12212278	.	+	.	Parent=Os06t0316300-00
Chr06	irgsp1_rep	CDS	12212279	12212378	.	+	0	Parent=Os06t0316300-00
Chr06	irgsp1_rep	CDS	12212525	12212928	.	+	2	Parent=Os06t0316300-00
Chr06	irgsp1_rep	three_prime_UTR	12212929	12213070	.	+	.	Parent=Os06t0316300-00
Chr06	irgsp1_rep	mRNA	12252282	12253365	.	-	.	ID=Os06t0316800-01;Name=Os06t0316800-01;Locus_id=Os06g0316800;Note=Similar to Glycine-rich protein (Fragment).;Transcript_evidence=AK062370 (DDBJ%2C Best hit);ORF_evidence=NP_001105566.1 (RefSeq);NIAS_FLcDNA=001-102-A04;Expression=AK062370;TENOR=Os06t0316800-01;KEGG=Os06t0316800-01
Chr06	irgsp1_rep	five_prime_UTR	12253324	12253365	.	-	.	Parent=Os06t0316800-01
Chr06	irgsp1_rep	CDS	12253221	12253323	.	-	0	Parent=Os06t0316800-01
Chr06	irgsp1_rep	CDS	12252588	12252916	.	-	2	Parent=Os06t0316800-01
Chr06	irgsp1_rep	three_prime_UTR	12252282	12252587	.	-	.	Parent=Os06t0316800-01
Chr06	irgsp1_rep	mRNA	12262695	12266951	.	+	.	ID=Os06t0316950-00;Name=Os06t0316950-00;Locus_id=Os06g0316950;Note=Conserved hypothetical protein.;Transcript_evidence=AF325718 (DDBJ);ORF_evidence=Q5Z4Q1 (UniProt);TENOR=Os06t0316950-00
Chr06	irgsp1_rep	CDS	12262695	12262964	.	+	0	Parent=Os06t0316950-00
Chr06	irgsp1_rep	CDS	12266763	12266951	.	+	0	Parent=Os06t0316950-00
Chr06	irgsp1_rep	mRNA	12273448	12274281	.	+	.	ID=Os06t0317100-00;Name=Os06t0317100-00;Locus_id=Os06g0317100;Note=Similar to glycine-rich cell wall structural protein.;Transcript_evidence=CT837813 (DDBJ%2C Best hit);ORF_evidence=NP_001151377.1 (RefSeq);InterPro=Glycine rich protein (IPR010800);TENOR=Os06t0317100-00;KEGG=Os06t0317100-00
Chr06	irgsp1_rep	five_prime_UTR	12273448	12273480	.	+	.	Parent=Os06t0317100-00
Chr06	irgsp1_rep	CDS	12273481	12273577	.	+	0	Parent=Os06t0317100-00
Chr06	irgsp1_rep	CDS	12273798	12273925	.	+	2	Parent=Os06t0317100-00
Chr06	irgsp1_rep	CDS	12274139	12274162	.	+	0	Parent=Os06t0317100-00
Chr06	irgsp1_rep	three_prime_UTR	12274163	12274281	.	+	.	Parent=Os06t0317100-00
Chr06	irgsp1_rep	mRNA	12279981	12281390	.	+	.	ID=Os06t0317200-01;Name=Os06t0317200-01;Locus_id=Os06g0317200;Note=Similar to glycine-rich cell wall structural protein.;Transcript_evidence=AK063002 (DDBJ%2C Best hit);ORF_evidence=Q5Z4P9 (UniProt);InterPro=Glycine rich protein (IPR010800);NIAS_FLcDNA=001-109-H05;Expression=AK063002;TENOR=Os06t0317200-01;KEGG=Os06t0317200-01
Chr06	irgsp1_rep	five_prime_UTR	12279981	12280014	.	+	.	Parent=Os06t0317200-01
Chr06	irgsp1_rep	CDS	12280015	12280114	.	+	0	Parent=Os06t0317200-01
Chr06	irgsp1_rep	CDS	12280850	12280973	.	+	2	Parent=Os06t0317200-01
Chr06	irgsp1_rep	CDS	12281112	12281196	.	+	1	Parent=Os06t0317200-01
Chr06	irgsp1_rep	three_prime_UTR	12281197	12281390	.	+	.	Parent=Os06t0317200-01
Chr06	irgsp1_rep	mRNA	12279981	12281401	.	+	.	ID=Os06t0317200-02;Name=Os06t0317200-02;Locus_id=Os06g0317200;Note=Similar to Homeobox protein Hox-D11 (Hox-4.6) (Hox-5.5).;Transcript_evidence=AK062964 (DDBJ%2C Best hit),AK104925 (DDBJ%2C Best hit);ORF_evidence=Q5Z4P9 (UniProt);NIAS_FLcDNA=001-109-D09,001-103-D09;TENOR=Os06t0317200-02
Chr06	irgsp1_rep	five_prime_UTR	12279981	12280014	.	+	.	Parent=Os06t0317200-02
Chr06	irgsp1_rep	CDS	12280015	12280114	.	+	0	Parent=Os06t0317200-02
Chr06	irgsp1_rep	CDS	12280850	12281083	.	+	2	Parent=Os06t0317200-02
Chr06	irgsp1_rep	CDS	12281120	12281196	.	+	2	Parent=Os06t0317200-02
Chr06	irgsp1_rep	three_prime_UTR	12281197	12281401	.	+	.	Parent=Os06t0317200-02
Chr06	irgsp1_rep	mRNA	12279981	12281401	.	+	.	ID=Os06t0317200-03;Name=Os06t0317200-03;Locus_id=Os06g0317200;Note=Glycine-rich protein (Fragment).;Transcript_evidence=AK062457 (DDBJ%2C Best hit);ORF_evidence=Q5Z4P9 (UniProt);NIAS_FLcDNA=001-103-C11;Expression=AK062457;TENOR=Os06t0317200-03;KEGG=Os06t0317200-03
Chr06	irgsp1_rep	five_prime_UTR	12279981	12280014	.	+	.	Parent=Os06t0317200-03
Chr06	irgsp1_rep	CDS	12280015	12280114	.	+	0	Parent=Os06t0317200-03
Chr06	irgsp1_rep	CDS	12280850	12281196	.	+	2	Parent=Os06t0317200-03
Chr06	irgsp1_rep	three_prime_UTR	12281197	12281401	.	+	.	Parent=Os06t0317200-03
Chr06	irgsp1_rep	mRNA	12287597	12288808	.	+	.	ID=Os06t0317400-01;Name=Os06t0317400-01;Locus_id=Os06g0317400;Note=Glycine rich family protein.;Transcript_evidence=AK241379 (DDBJ%2C Best hit);ORF_evidence=NP_001057499.2 (RefSeq);InterPro=Glycine rich protein (IPR010800);NIAS_FLcDNA=J065155L01;TENOR=Os06t0317400-01;KEGG=Os06t0317400-01
Chr06	irgsp1_rep	five_prime_UTR	12287597	12287611	.	+	.	Parent=Os06t0317400-01
Chr06	irgsp1_rep	CDS	12287612	12287711	.	+	0	Parent=Os06t0317400-01
Chr06	irgsp1_rep	CDS	12288215	12288576	.	+	2	Parent=Os06t0317400-01
Chr06	irgsp1_rep	three_prime_UTR	12288577	12288808	.	+	.	Parent=Os06t0317400-01
Chr06	irgsp1_rep	mRNA	12297993	12298980	.	+	.	ID=Os06t0317600-01;Name=Os06t0317600-01;Locus_id=Os06g0317600;Note=Similar to Similarity.;Transcript_evidence=AK120680 (DDBJ%2C Best hit);ORF_evidence=B8B142 (UniProt);NIAS_FLcDNA=J013162K23;Expression=AK120680;TENOR=Os06t0317600-01;KEGG=Os06t0317600-01
Chr06	irgsp1_rep	five_prime_UTR	12297993	12298045	.	+	.	Parent=Os06t0317600-01
Chr06	irgsp1_rep	CDS	12298046	12298145	.	+	0	Parent=Os06t0317600-01
Chr06	irgsp1_rep	CDS	12298370	12298540	.	+	2	Parent=Os06t0317600-01
Chr06	irgsp1_rep	CDS	12298643	12298770	.	+	2	Parent=Os06t0317600-01
Chr06	irgsp1_rep	three_prime_UTR	12298771	12298980	.	+	.	Parent=Os06t0317600-01
Chr06	irgsp1_rep	mRNA	12318391	12320838	.	+	.	ID=Os06t0318200-01;Name=Os06t0318200-01;Locus_id=Os06g0318200;Note=Ankyrin domain containing protein.;Transcript_evidence=AK106874 (DDBJ%2C Best hit);ORF_evidence=XP_002883659.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),Ankyrin repeat (IPR002110),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=002-118-E01;Expression=AK106874;TENOR=Os06t0318200-01;KEGG=Os06t0318200-01
Chr06	irgsp1_rep	five_prime_UTR	12318391	12318470	.	+	.	Parent=Os06t0318200-01
Chr06	irgsp1_rep	CDS	12318471	12318984	.	+	0	Parent=Os06t0318200-01
Chr06	irgsp1_rep	CDS	12319326	12320070	.	+	2	Parent=Os06t0318200-01
Chr06	irgsp1_rep	CDS	12320153	12320189	.	+	1	Parent=Os06t0318200-01
Chr06	irgsp1_rep	CDS	12320286	12320419	.	+	0	Parent=Os06t0318200-01
Chr06	irgsp1_rep	CDS	12320501	12320828	.	+	1	Parent=Os06t0318200-01
Chr06	irgsp1_rep	three_prime_UTR	12320829	12320838	.	+	.	Parent=Os06t0318200-01
Chr06	irgsp1_rep	mRNA	12322950	12326083	.	-	.	ID=Os06t0318300-01;Name=Os06t0318300-01;Locus_id=Os06g0318300;Note=Similar to Rho GDP dissociation inhibitor 2 (Fragment).;Transcript_evidence=AK060873 (DDBJ%2C Best hit);ORF_evidence=Q6UQ71 (UniProt);GO=Cellular Component: cytoplasm (GO:0005737),Molecular Function: Rho GDP-dissociation inhibitor activity (GO:0005094);InterPro=RHO protein GDP dissociation inhibitor (IPR000406),Immunoglobulin E-set (IPR014756);NIAS_FLcDNA=001-034-H12;Expression=AK060873;TENOR=Os06t0318300-01;KEGG=Os06t0318300-01
Chr06	irgsp1_rep	five_prime_UTR	12325945	12326083	.	-	.	Parent=Os06t0318300-01
Chr06	irgsp1_rep	CDS	12325627	12325944	.	-	0	Parent=Os06t0318300-01
Chr06	irgsp1_rep	CDS	12325397	12325463	.	-	0	Parent=Os06t0318300-01
Chr06	irgsp1_rep	CDS	12323692	12323913	.	-	2	Parent=Os06t0318300-01
Chr06	irgsp1_rep	CDS	12323367	12323524	.	-	2	Parent=Os06t0318300-01
Chr06	irgsp1_rep	three_prime_UTR	12322950	12323366	.	-	.	Parent=Os06t0318300-01
Chr06	irgsp1_rep	mRNA	12322915	12326041	.	-	.	ID=Os06t0318300-02;Name=Os06t0318300-02;Locus_id=Os06g0318300;Note=Similar to Rho GDP-dissociation inhibitor 1 (Rho GDI-1) (AtRhoGDI1).;Transcript_evidence=AK065671 (DDBJ%2C Best hit);ORF_evidence=Q6UQ71 (UniProt);GO=Cellular Component: cytoplasm (GO:0005737),Molecular Function: Rho GDP-dissociation inhibitor activity (GO:0005094);InterPro=RHO protein GDP dissociation inhibitor (IPR000406),Immunoglobulin E-set (IPR014756);NIAS_FLcDNA=J013041C14;Expression=AK065671;TENOR=Os06t0318300-02;KEGG=Os06t0318300-02
Chr06	irgsp1_rep	five_prime_UTR	12325945	12326041	.	-	.	Parent=Os06t0318300-02
Chr06	irgsp1_rep	CDS	12325627	12325944	.	-	0	Parent=Os06t0318300-02
Chr06	irgsp1_rep	CDS	12325397	12325463	.	-	0	Parent=Os06t0318300-02
Chr06	irgsp1_rep	CDS	12323692	12323913	.	-	2	Parent=Os06t0318300-02
Chr06	irgsp1_rep	CDS	12323400	12323524	.	-	2	Parent=Os06t0318300-02
Chr06	irgsp1_rep	CDS	12323212	12323292	.	-	0	Parent=Os06t0318300-02
Chr06	irgsp1_rep	three_prime_UTR	12322915	12323211	.	-	.	Parent=Os06t0318300-02
Chr06	irgsp1_rep	mRNA	12329237	12329957	.	-	.	ID=Os06t0318400-00;Name=Os06t0318400-00;Locus_id=Os06g0318400;Note=Similar to predicted protein.;Transcript_evidence=BT063021 (DDBJ);ORF_evidence=NP_001067521.1 (RefSeq);TENOR=Os06t0318400-00;KEGG=Os06t0318400-00
Chr06	irgsp1_rep	CDS	12329748	12329957	.	-	0	Parent=Os06t0318400-00
Chr06	irgsp1_rep	CDS	12329282	12329650	.	-	0	Parent=Os06t0318400-00
Chr06	irgsp1_rep	three_prime_UTR	12329237	12329281	.	-	.	Parent=Os06t0318400-00
Chr06	irgsp1_rep	mRNA	12333229	12337317	.	+	.	ID=Os06t0318500-00;Name=Os06t0318500-00;Locus_id=Os06g0318500;CGSNL Gene Symbol=NHX4;CGSNL Gene Name=NA+/H+ ANTIPORTER 4;Oryzabase Gene Symbol Synonym(s)=OsNHX4;Oryzabase Gene Name Synonym(s)=Na+/H+ antiporter 4%2C NHX-type antiporter 4;Note=Similar to Sodium/hydrogen exchanger.;Transcript_evidence=AK376115 (DDBJ);ORF_evidence=A7X9Z5 (UniProt);GO=Biological Process: cation transport (GO:0006812),Biological Process: sodium ion transport (GO:0006814),Biological Process: regulation of pH (GO:0006885),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: solute:hydrogen antiporter activity (GO:0015299),Molecular Function: sodium:hydrogen antiporter activity (GO:0015385);InterPro=Na+/H+ exchanger (IPR004709),Cation/H+ exchanger (IPR006153),Cation/H+ exchanger%2C CPA1 family (IPR018422);Oryzabase=11247;TENOR=Os06t0318500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	12333229	12333261	.	+	.	Parent=Os06t0318500-00
Chr06	irgsp1_rep	CDS	12333262	12333441	.	+	0	Parent=Os06t0318500-00
Chr06	irgsp1_rep	CDS	12334447	12334565	.	+	0	Parent=Os06t0318500-00
Chr06	irgsp1_rep	CDS	12334718	12334815	.	+	1	Parent=Os06t0318500-00
Chr06	irgsp1_rep	CDS	12335014	12335073	.	+	2	Parent=Os06t0318500-00
Chr06	irgsp1_rep	CDS	12335147	12335193	.	+	2	Parent=Os06t0318500-00
Chr06	irgsp1_rep	CDS	12335285	12335479	.	+	0	Parent=Os06t0318500-00
Chr06	irgsp1_rep	CDS	12335598	12335644	.	+	0	Parent=Os06t0318500-00
Chr06	irgsp1_rep	CDS	12335735	12335801	.	+	1	Parent=Os06t0318500-00
Chr06	irgsp1_rep	CDS	12335892	12335992	.	+	0	Parent=Os06t0318500-00
Chr06	irgsp1_rep	CDS	12336217	12336318	.	+	1	Parent=Os06t0318500-00
Chr06	irgsp1_rep	CDS	12336385	12336526	.	+	1	Parent=Os06t0318500-00
Chr06	irgsp1_rep	CDS	12336635	12336697	.	+	0	Parent=Os06t0318500-00
Chr06	irgsp1_rep	CDS	12336781	12336864	.	+	0	Parent=Os06t0318500-00
Chr06	irgsp1_rep	CDS	12336963	12337283	.	+	0	Parent=Os06t0318500-00
Chr06	irgsp1_rep	three_prime_UTR	12337284	12337317	.	+	.	Parent=Os06t0318500-00
Chr06	irgsp1_rep	mRNA	12339154	12339960	.	-	.	ID=Os06t0318533-01;Name=Os06t0318533-01;Locus_id=Os06g0318533;Note=Conserved hypothetical protein.;Transcript_evidence=AK241925 (DDBJ%2C Best hit);ORF_evidence=B9FSZ3 (UniProt);NIAS_FLcDNA=J075076H06;TENOR=Os06t0318533-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	12339476	12339960	.	-	.	Parent=Os06t0318533-01
Chr06	irgsp1_rep	CDS	12339176	12339475	.	-	0	Parent=Os06t0318533-01
Chr06	irgsp1_rep	three_prime_UTR	12339154	12339175	.	-	.	Parent=Os06t0318533-01
Chr06	irgsp1_rep	mRNA	12345934	12349937	.	-	.	ID=Os06t0318566-00;Name=Os06t0318566-00;Locus_id=Os06g0318566;Note=Hypothetical protein.;Transcript_evidence=tplb0041h13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0318566-00
Chr06	irgsp1_rep	five_prime_UTR	12349828	12349937	.	-	.	Parent=Os06t0318566-00
Chr06	irgsp1_rep	CDS	12349504	12349827	.	-	0	Parent=Os06t0318566-00
Chr06	irgsp1_rep	CDS	12349333	12349389	.	-	0	Parent=Os06t0318566-00
Chr06	irgsp1_rep	three_prime_UTR	12349263	12349332	.	-	.	Parent=Os06t0318566-00
Chr06	irgsp1_rep	three_prime_UTR	12349020	12349168	.	-	.	Parent=Os06t0318566-00
Chr06	irgsp1_rep	three_prime_UTR	12348848	12348935	.	-	.	Parent=Os06t0318566-00
Chr06	irgsp1_rep	three_prime_UTR	12348209	12348347	.	-	.	Parent=Os06t0318566-00
Chr06	irgsp1_rep	three_prime_UTR	12347721	12347824	.	-	.	Parent=Os06t0318566-00
Chr06	irgsp1_rep	three_prime_UTR	12346989	12347073	.	-	.	Parent=Os06t0318566-00
Chr06	irgsp1_rep	three_prime_UTR	12346827	12346911	.	-	.	Parent=Os06t0318566-00
Chr06	irgsp1_rep	three_prime_UTR	12346615	12346728	.	-	.	Parent=Os06t0318566-00
Chr06	irgsp1_rep	three_prime_UTR	12346392	12346486	.	-	.	Parent=Os06t0318566-00
Chr06	irgsp1_rep	three_prime_UTR	12345934	12346287	.	-	.	Parent=Os06t0318566-00
Chr06	irgsp1_rep	mRNA	12345953	12350133	.	+	.	ID=Os06t0318600-01;Name=Os06t0318600-01;Locus_id=Os06g0318600;Oryzabase Gene Symbol Synonym(s)=OsCttP3%2C CTTP3;Oryzabase Gene Name Synonym(s)=C-terminal processing peptidase 3%2C C-TERMINAL PROCESSING PEPTIDASE 3;Note=Peptidase S41 domain containing protein.;Transcript_evidence=AK069141 (DDBJ%2C Best hit);ORF_evidence=NP_001148747.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: protein binding (GO:0005515),Molecular Function: serine-type peptidase activity (GO:0008236);InterPro=PDZ/DHR/GLGF (IPR001478),Peptidase S41A%2C C-terminal peptidase (IPR004447),Interphotoreceptor retinol-binding (IPR005151);NIAS_FLcDNA=J023008K20;Oryzabase=20056;Expression=AK069141;TENOR=Os06t0318600-01;KEGG=Os06t0318600-01 (EC:3.4.21.102)
Chr06	irgsp1_rep	five_prime_UTR	12345953	12346106	.	+	.	Parent=Os06t0318600-01
Chr06	irgsp1_rep	CDS	12346107	12346289	.	+	0	Parent=Os06t0318600-01
Chr06	irgsp1_rep	CDS	12346394	12346475	.	+	0	Parent=Os06t0318600-01
Chr06	irgsp1_rep	CDS	12346600	12346730	.	+	2	Parent=Os06t0318600-01
Chr06	irgsp1_rep	CDS	12346829	12346915	.	+	0	Parent=Os06t0318600-01
Chr06	irgsp1_rep	CDS	12346997	12347075	.	+	0	Parent=Os06t0318600-01
Chr06	irgsp1_rep	CDS	12347723	12347811	.	+	2	Parent=Os06t0318600-01
Chr06	irgsp1_rep	CDS	12347968	12348009	.	+	0	Parent=Os06t0318600-01
Chr06	irgsp1_rep	CDS	12348233	12348352	.	+	0	Parent=Os06t0318600-01
Chr06	irgsp1_rep	CDS	12348851	12348937	.	+	0	Parent=Os06t0318600-01
Chr06	irgsp1_rep	CDS	12349022	12349171	.	+	0	Parent=Os06t0318600-01
Chr06	irgsp1_rep	CDS	12349269	12349372	.	+	0	Parent=Os06t0318600-01
Chr06	irgsp1_rep	CDS	12349492	12349744	.	+	1	Parent=Os06t0318600-01
Chr06	irgsp1_rep	three_prime_UTR	12349745	12350133	.	+	.	Parent=Os06t0318600-01
Chr06	irgsp1_rep	mRNA	12352362	12357782	.	-	.	ID=Os06t0318650-00;Name=Os06t0318650-00;Locus_id=Os06g0318650;Note=Hypothetical protein.;Transcript_evidence=tplb0022l08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0318650-00
Chr06	irgsp1_rep	five_prime_UTR	12357470	12357782	.	-	.	Parent=Os06t0318650-00
Chr06	irgsp1_rep	five_prime_UTR	12356846	12356968	.	-	.	Parent=Os06t0318650-00
Chr06	irgsp1_rep	five_prime_UTR	12356658	12356767	.	-	.	Parent=Os06t0318650-00
Chr06	irgsp1_rep	five_prime_UTR	12355136	12355200	.	-	.	Parent=Os06t0318650-00
Chr06	irgsp1_rep	five_prime_UTR	12354091	12354905	.	-	.	Parent=Os06t0318650-00
Chr06	irgsp1_rep	five_prime_UTR	12353977	12354029	.	-	.	Parent=Os06t0318650-00
Chr06	irgsp1_rep	CDS	12353883	12353976	.	-	0	Parent=Os06t0318650-00
Chr06	irgsp1_rep	CDS	12352362	12352545	.	-	2	Parent=Os06t0318650-00
Chr06	irgsp1_rep	mRNA	12352403	12358103	.	+	.	ID=Os06t0318700-01;Name=Os06t0318700-01;Locus_id=Os06g0318700;RAP-DB Gene Symbol Synonym(s)=MKRN;RAP-DB Gene Name Synonym(s)=Makorin RING finger protein;CGSNL Gene Symbol=C3H41;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 41;Oryzabase Gene Symbol Synonym(s)=OsC3H41%2C MKRN;Oryzabase Gene Name Synonym(s)=E3 ubiquitin-protein ligase makorin%2C Zinc finger CCCH domain-containing protein 41;Note=Makorin RING finger protein%2C Pattern formation and organogenesis during embryogenesis and post-embryogenesis;Transcript_evidence=AK120250;ORF_evidence=Q5ZA07;GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C CCCH-type superfamily (IPR036855),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C CCCH-type (IPR000571),E3 ligase%2C CCCH-type zinc finger (IPR041367),Zinc finger%2C RING-type (IPR001841),Zinc finger%2C C3HC4 RING-type (IPR018957),Zinc finger%2C RING-type%2C conserved site (IPR017907);NIAS_FLcDNA=J013045F22;Manual Curation=August 3%2C 2020;Literature_PMID=23262670;Oryzabase=8607;Expression=AK120250;TENOR=Os06t0318700-01;KEGG=Os06t0318700-01
Chr06	irgsp1_rep	five_prime_UTR	12352403	12352624	.	+	.	Parent=Os06t0318700-01
Chr06	irgsp1_rep	CDS	12352625	12352638	.	+	0	Parent=Os06t0318700-01
Chr06	irgsp1_rep	CDS	12353913	12354000	.	+	1	Parent=Os06t0318700-01
Chr06	irgsp1_rep	CDS	12354099	12354910	.	+	0	Parent=Os06t0318700-01
Chr06	irgsp1_rep	CDS	12355144	12355213	.	+	1	Parent=Os06t0318700-01
Chr06	irgsp1_rep	CDS	12356672	12356760	.	+	0	Parent=Os06t0318700-01
Chr06	irgsp1_rep	CDS	12356836	12356869	.	+	1	Parent=Os06t0318700-01
Chr06	irgsp1_rep	three_prime_UTR	12356870	12356896	.	+	.	Parent=Os06t0318700-01
Chr06	irgsp1_rep	three_prime_UTR	12357493	12358103	.	+	.	Parent=Os06t0318700-01
Chr06	irgsp1_rep	mRNA	12356834	12358078	.	+	.	ID=Os06t0318700-02;Name=Os06t0318700-02;Locus_id=Os06g0318700;CGSNL Gene Symbol=C3H41;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 41;Oryzabase Gene Symbol Synonym(s)=OsC3H41%2C MKRN;Oryzabase Gene Name Synonym(s)=E3 ubiquitin-protein ligase makorin%2C Zinc finger CCCH domain-containing protein 41;Note=Non-protein coding transcript.;Transcript_evidence=AK061908 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-041-H12;Oryzabase=8607;TENOR=Os06t0318700-02
Chr06	irgsp1_rep	exon	12356834	12356896	.	+	.	Parent=Os06t0318700-02
Chr06	irgsp1_rep	exon	12357493	12358078	.	+	.	Parent=Os06t0318700-02
Chr06	irgsp1_rep	mRNA	12359510	12360112	.	-	.	ID=Os06t0318800-01;Name=Os06t0318800-01;Locus_id=Os06g0318800;CGSNL Gene Symbol=AGP24;CGSNL Gene Name=ARABINOGALACTAN PROTEIN 24;Oryzabase Gene Symbol Synonym(s)=OsAGP24;Oryzabase Gene Name Synonym(s)=Arabinogalactan protein 24;Note=Non-protein coding transcript.;Transcript_evidence=AK062356 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-101-G11;Oryzabase=11317;TENOR=Os06t0318800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	exon	12359510	12360112	.	-	.	Parent=Os06t0318800-01
Chr06	irgsp1_rep	mRNA	12363897	12365218	.	+	.	ID=Os06t0318900-01;Name=Os06t0318900-01;Locus_id=Os06g0318900;CGSNL Gene Symbol=AGP25;CGSNL Gene Name=ARABINOGALACTAN PROTEIN 25;Oryzabase Gene Symbol Synonym(s)=OsAGP25;Oryzabase Gene Name Synonym(s)=Arabinogalactan protein 25;Note=Non-protein coding transcript.;Transcript_evidence=AK242692 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090035I01;Oryzabase=11318;TENOR=Os06t0318900-01
Chr06	irgsp1_rep	exon	12363897	12365218	.	+	.	Parent=Os06t0318900-01
Chr06	irgsp1_rep	mRNA	12366482	12367048	.	+	.	ID=Os06t0319133-00;Name=Os06t0319133-00;Locus_id=Os06g0319133;Note=Non-protein coding transcript.;Transcript_evidence=CT836220 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os06t0319133-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	exon	12366482	12367048	.	+	.	Parent=Os06t0319133-00
Chr06	irgsp1_rep	mRNA	12366518	12366742	.	-	.	ID=Os06t0319366-00;Name=Os06t0319366-00;Locus_id=Os06g0319366;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5ZA06 (UniProt);TENOR=Os06t0319366-00;KEGG=Os06t0319366-00
Chr06	irgsp1_rep	CDS	12366518	12366742	.	-	0	Parent=Os06t0319366-00
Chr06	irgsp1_rep	mRNA	12390233	12390553	.	-	.	ID=Os06t0319540-00;Name=Os06t0319540-00;Locus_id=Os06g0319540;Note=Non-protein coding transcript.;Transcript_evidence=EU946489 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0319540-00
Chr06	irgsp1_rep	exon	12390233	12390553	.	-	.	Parent=Os06t0319540-00
Chr06	irgsp1_rep	mRNA	12403412	12410351	.	+	.	ID=Os06t0319600-01;Name=Os06t0319600-01;Locus_id=Os06g0319600;Note=Poly(A) polymerase%2C central domain domain containing protein.;Transcript_evidence=AK068880 (DDBJ%2C Best hit);ORF_evidence=B9FSZ6 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: polynucleotide adenylyltransferase activity (GO:0004652);InterPro=Poly(A) polymerase%2C central domain (IPR007012);NIAS_FLcDNA=J013170A10;TENOR=Os06t0319600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	12403412	12403848	.	+	.	Parent=Os06t0319600-01
Chr06	irgsp1_rep	five_prime_UTR	12403973	12404253	.	+	.	Parent=Os06t0319600-01
Chr06	irgsp1_rep	CDS	12404254	12404358	.	+	0	Parent=Os06t0319600-01
Chr06	irgsp1_rep	CDS	12404453	12404530	.	+	0	Parent=Os06t0319600-01
Chr06	irgsp1_rep	CDS	12404615	12404821	.	+	0	Parent=Os06t0319600-01
Chr06	irgsp1_rep	three_prime_UTR	12404822	12405147	.	+	.	Parent=Os06t0319600-01
Chr06	irgsp1_rep	three_prime_UTR	12405227	12405388	.	+	.	Parent=Os06t0319600-01
Chr06	irgsp1_rep	three_prime_UTR	12405627	12405928	.	+	.	Parent=Os06t0319600-01
Chr06	irgsp1_rep	three_prime_UTR	12406118	12406447	.	+	.	Parent=Os06t0319600-01
Chr06	irgsp1_rep	three_prime_UTR	12407073	12407237	.	+	.	Parent=Os06t0319600-01
Chr06	irgsp1_rep	three_prime_UTR	12407313	12408248	.	+	.	Parent=Os06t0319600-01
Chr06	irgsp1_rep	three_prime_UTR	12409890	12409960	.	+	.	Parent=Os06t0319600-01
Chr06	irgsp1_rep	three_prime_UTR	12410110	12410351	.	+	.	Parent=Os06t0319600-01
Chr06	irgsp1_rep	mRNA	12412530	12415341	.	+	.	ID=Os06t0319700-01;Name=Os06t0319700-01;Locus_id=Os06g0319700;CGSNL Gene Symbol=RPL31;CGSNL Gene Name=RIBOSOMAL PROTEIN L31;Oryzabase Gene Symbol Synonym(s)=OsRPL31;Oryzabase Gene Name Synonym(s)=Ribosomal protein L31;Note=Similar to 60S ribosomal protein L31.;Transcript_evidence=AK120884 (DDBJ%2C Best hit);ORF_evidence=B6SNJ5 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L31e (IPR000054),Ribosomal protein L31e domain (IPR023621);NIAS_FLcDNA=J023028N24;Oryzabase=17674;Expression=AK120884;TENOR=Os06t0319700-01;KEGG=Os06t0319700-01
Chr06	irgsp1_rep	five_prime_UTR	12412530	12412620	.	+	.	Parent=Os06t0319700-01
Chr06	irgsp1_rep	CDS	12412621	12412715	.	+	0	Parent=Os06t0319700-01
Chr06	irgsp1_rep	CDS	12414717	12414996	.	+	1	Parent=Os06t0319700-01
Chr06	irgsp1_rep	three_prime_UTR	12414997	12415341	.	+	.	Parent=Os06t0319700-01
Chr06	irgsp1_rep	mRNA	12426184	12426831	.	-	.	ID=Os06t0319800-00;Name=Os06t0319800-00;Locus_id=Os06g0319800;Note=Similar to ABC-type Co2+ transport system%2C permease component.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001150699.1 (RefSeq);InterPro=Protein of unknown function DUF3464 (IPR021855);TENOR=Os06t0319800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	12426184	12426831	.	-	0	Parent=Os06t0319800-00
Chr06	irgsp1_rep	mRNA	12426288	12426886	.	+	.	ID=Os06t0319850-00;Name=Os06t0319850-00;Locus_id=Os06g0319850;Note=Hypothetical gene.;Transcript_evidence=BT087949 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0319850-00;KEGG=Os06t0319850-00
Chr06	irgsp1_rep	five_prime_UTR	12426288	12426288	.	+	.	Parent=Os06t0319850-00
Chr06	irgsp1_rep	CDS	12426289	12426885	.	+	0	Parent=Os06t0319850-00
Chr06	irgsp1_rep	three_prime_UTR	12426886	12426886	.	+	.	Parent=Os06t0319850-00
Chr06	irgsp1_rep	mRNA	12431773	12432551	.	-	.	ID=Os06t0320000-01;Name=Os06t0320000-01;Locus_id=Os06g0320000;Note=Thioredoxin fold domain containing protein.;Transcript_evidence=AK242275 (DDBJ%2C Best hit);ORF_evidence=B6TP19 (UniProt);InterPro=Protein of unknown function DUF953%2C thioredoxin-like (IPR010357),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=J075187J24;TENOR=Os06t0320000-01;KEGG=Os06t0320000-01
Chr06	irgsp1_rep	five_prime_UTR	12432444	12432551	.	-	.	Parent=Os06t0320000-01
Chr06	irgsp1_rep	CDS	12432293	12432443	.	-	0	Parent=Os06t0320000-01
Chr06	irgsp1_rep	CDS	12431924	12432192	.	-	2	Parent=Os06t0320000-01
Chr06	irgsp1_rep	three_prime_UTR	12431773	12431923	.	-	.	Parent=Os06t0320000-01
Chr06	irgsp1_rep	mRNA	12434113	12437232	.	+	.	ID=Os06t0320100-01;Name=Os06t0320100-01;Locus_id=Os06g0320100;Note=Protein of unknown function DUF773 family protein.;Transcript_evidence=AK101600 (DDBJ%2C Best hit),AK067233 (DDBJ%2C Best hit);ORF_evidence=B6T2L5 (UniProt);InterPro=Protein of unknown function DUF773 (IPR008491);NIAS_FLcDNA=J033051I20,J013095B21;Expression=AK101600;TENOR=Os06t0320100-01;KEGG=Os06t0320100-01
Chr06	irgsp1_rep	five_prime_UTR	12434113	12434214	.	+	.	Parent=Os06t0320100-01
Chr06	irgsp1_rep	CDS	12434215	12434410	.	+	0	Parent=Os06t0320100-01
Chr06	irgsp1_rep	CDS	12434604	12434698	.	+	2	Parent=Os06t0320100-01
Chr06	irgsp1_rep	CDS	12434811	12434905	.	+	0	Parent=Os06t0320100-01
Chr06	irgsp1_rep	CDS	12435017	12435152	.	+	1	Parent=Os06t0320100-01
Chr06	irgsp1_rep	CDS	12435277	12435426	.	+	0	Parent=Os06t0320100-01
Chr06	irgsp1_rep	CDS	12435514	12436035	.	+	0	Parent=Os06t0320100-01
Chr06	irgsp1_rep	CDS	12436285	12436493	.	+	0	Parent=Os06t0320100-01
Chr06	irgsp1_rep	CDS	12436615	12436747	.	+	1	Parent=Os06t0320100-01
Chr06	irgsp1_rep	CDS	12437017	12437157	.	+	0	Parent=Os06t0320100-01
Chr06	irgsp1_rep	three_prime_UTR	12437158	12437232	.	+	.	Parent=Os06t0320100-01
Chr06	irgsp1_rep	mRNA	12437683	12442790	.	-	.	ID=Os06t0320200-01;Name=Os06t0320200-01;Locus_id=Os06g0320200;CGSNL Gene Symbol=BGLU24;CGSNL Gene Name=BETA-GLUCOSIDASE 24;Oryzabase Gene Symbol Synonym(s)=Os6bglu24%2C Os6BGlu24;Oryzabase Gene Name Synonym(s)=beta-glucosidase 24;Note=Similar to OSIGBa0135C13.7 protein.;Transcript_evidence=AK241587 (DDBJ%2C Best hit);ORF_evidence=Q5Z9Z0 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 1%2C active site (IPR018120);NIAS_FLcDNA=J065182G02;Oryzabase=12097;TENOR=Os06t0320200-01;KEGG=Os06t0320200-01
Chr06	irgsp1_rep	five_prime_UTR	12442743	12442790	.	-	.	Parent=Os06t0320200-01
Chr06	irgsp1_rep	CDS	12442602	12442742	.	-	0	Parent=Os06t0320200-01
Chr06	irgsp1_rep	CDS	12442439	12442508	.	-	0	Parent=Os06t0320200-01
Chr06	irgsp1_rep	CDS	12440765	12440823	.	-	2	Parent=Os06t0320200-01
Chr06	irgsp1_rep	CDS	12440596	12440671	.	-	0	Parent=Os06t0320200-01
Chr06	irgsp1_rep	CDS	12440297	12440374	.	-	2	Parent=Os06t0320200-01
Chr06	irgsp1_rep	CDS	12440115	12440202	.	-	2	Parent=Os06t0320200-01
Chr06	irgsp1_rep	CDS	12439631	12439886	.	-	1	Parent=Os06t0320200-01
Chr06	irgsp1_rep	CDS	12439238	12439353	.	-	0	Parent=Os06t0320200-01
Chr06	irgsp1_rep	CDS	12438856	12439129	.	-	1	Parent=Os06t0320200-01
Chr06	irgsp1_rep	three_prime_UTR	12438790	12438855	.	-	.	Parent=Os06t0320200-01
Chr06	irgsp1_rep	three_prime_UTR	12438486	12438588	.	-	.	Parent=Os06t0320200-01
Chr06	irgsp1_rep	three_prime_UTR	12438305	12438413	.	-	.	Parent=Os06t0320200-01
Chr06	irgsp1_rep	three_prime_UTR	12437683	12438165	.	-	.	Parent=Os06t0320200-01
Chr06	irgsp1_rep	mRNA	12437997	12442742	.	-	.	ID=Os06t0320200-02;Name=Os06t0320200-02;Locus_id=Os06g0320200;RAP-DB Gene Symbol Synonym(s)=Os6BGlu24;RAP-DB Gene Name Synonym(s)=&beta%3B-Glucosidase 24%2C beta-glucosidase 24;CGSNL Gene Symbol=BGLU24;CGSNL Gene Name=BETA-GLUCOSIDASE 24;Oryzabase Gene Symbol Synonym(s)=Os6bglu24%2C Os6BGlu24;Oryzabase Gene Name Synonym(s)=beta-glucosidase 24;Note=Glycosyl hydrolase family 1 (GH1) beta-glucosidase%2C Seed germination%2C Root elongation%2C Drought tolerance;Transcript_evidence=Inferred from literature;ORF_evidence=Q5Z9Z0;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase superfamily (IPR017853),Glycoside hydrolase family 1 (IPR001360),Glycosyl hydrolases family 1%2C N-terminal conserved site (IPR033132);Manual Curation=February 5%2C 2020;Literature_PMID=30848355;Oryzabase=12097
Chr06	irgsp1_rep	CDS	12442602	12442742	.	-	0	Parent=Os06t0320200-02
Chr06	irgsp1_rep	CDS	12442439	12442508	.	-	0	Parent=Os06t0320200-02
Chr06	irgsp1_rep	CDS	12440765	12440823	.	-	2	Parent=Os06t0320200-02
Chr06	irgsp1_rep	CDS	12440596	12440671	.	-	0	Parent=Os06t0320200-02
Chr06	irgsp1_rep	CDS	12440297	12440374	.	-	2	Parent=Os06t0320200-02
Chr06	irgsp1_rep	CDS	12440115	12440202	.	-	2	Parent=Os06t0320200-02
Chr06	irgsp1_rep	CDS	12439631	12439886	.	-	1	Parent=Os06t0320200-02
Chr06	irgsp1_rep	CDS	12439238	12439353	.	-	0	Parent=Os06t0320200-02
Chr06	irgsp1_rep	CDS	12438912	12439129	.	-	1	Parent=Os06t0320200-02
Chr06	irgsp1_rep	CDS	12438790	12438821	.	-	2	Parent=Os06t0320200-02
Chr06	irgsp1_rep	CDS	12438486	12438588	.	-	0	Parent=Os06t0320200-02
Chr06	irgsp1_rep	CDS	12438305	12438413	.	-	2	Parent=Os06t0320200-02
Chr06	irgsp1_rep	CDS	12437997	12438165	.	-	1	Parent=Os06t0320200-02
Chr06	irgsp1_rep	mRNA	12446444	12448247	.	-	.	ID=Os06t0320300-01;Name=Os06t0320300-01;Locus_id=Os06g0320300;Note=HMG-I and HMG-Y%2C DNA-binding domain containing protein.;Transcript_evidence=AK058736 (DDBJ%2C Best hit);ORF_evidence=A2YCB8 (UniProt);NIAS_FLcDNA=001-019-G03;Expression=AK058736;TENOR=Os06t0320300-01;KEGG=Os06t0320300-01
Chr06	irgsp1_rep	five_prime_UTR	12447713	12448247	.	-	.	Parent=Os06t0320300-01
Chr06	irgsp1_rep	five_prime_UTR	12447132	12447372	.	-	.	Parent=Os06t0320300-01
Chr06	irgsp1_rep	CDS	12446694	12447131	.	-	0	Parent=Os06t0320300-01
Chr06	irgsp1_rep	three_prime_UTR	12446444	12446693	.	-	.	Parent=Os06t0320300-01
Chr06	irgsp1_rep	mRNA	12446441	12448138	.	-	.	ID=Os06t0320300-02;Name=Os06t0320300-02;Locus_id=Os06g0320300;Note=HMG-I and HMG-Y%2C DNA-binding domain containing protein.;Transcript_evidence=AK071655 (DDBJ%2C Best hit);ORF_evidence=A2YCB8 (UniProt);NIAS_FLcDNA=J023101J24;TENOR=Os06t0320300-02
Chr06	irgsp1_rep	five_prime_UTR	12447713	12448138	.	-	.	Parent=Os06t0320300-02
Chr06	irgsp1_rep	five_prime_UTR	12447132	12447372	.	-	.	Parent=Os06t0320300-02
Chr06	irgsp1_rep	CDS	12446694	12447131	.	-	0	Parent=Os06t0320300-02
Chr06	irgsp1_rep	three_prime_UTR	12446441	12446693	.	-	.	Parent=Os06t0320300-02
Chr06	irgsp1_rep	mRNA	12452708	12454049	.	+	.	ID=Os06t0320500-01;Name=Os06t0320500-01;Locus_id=Os06g0320500;CGSNL Gene Symbol=LHCA1;CGSNL Gene Name=LIGHT-HARVESTING COMPLEX SUBUNIT A1;Oryzabase Gene Symbol Synonym(s)=OsLhca1%2C Lhca1;Oryzabase Gene Name Synonym(s)=light-harvesting complex subunit a1;Note=Similar to Light-harvesting complex I (Fragment).;Transcript_evidence=AK060904 (DDBJ%2C Best hit),AK098864 (DDBJ%2C Best hit);ORF_evidence=Q9ZSU0 (UniProt);GO=Biological Process: photosynthesis%2C light harvesting (GO:0009765),Cellular Component: membrane (GO:0016020);InterPro=Chlorophyll A-B binding protein%2C plant (IPR001344),Chlorophyll A-B binding protein (IPR022796),Chlorophyll a/b binding protein domain (IPR023329);NIAS_FLcDNA=001-035-E07,J013001A03;Oryzabase=22718;TENOR=Os06t0320500-01
Chr06	irgsp1_rep	five_prime_UTR	12452708	12452794	.	+	.	Parent=Os06t0320500-01
Chr06	irgsp1_rep	CDS	12452795	12452976	.	+	0	Parent=Os06t0320500-01
Chr06	irgsp1_rep	CDS	12453077	12453179	.	+	1	Parent=Os06t0320500-01
Chr06	irgsp1_rep	CDS	12453264	12453552	.	+	0	Parent=Os06t0320500-01
Chr06	irgsp1_rep	CDS	12453663	12453814	.	+	2	Parent=Os06t0320500-01
Chr06	irgsp1_rep	three_prime_UTR	12453815	12454049	.	+	.	Parent=Os06t0320500-01
Chr06	irgsp1_rep	mRNA	12456786	12462588	.	-	.	ID=Os06t0320700-01;Name=Os06t0320700-01;Locus_id=Os06g0320700;Note=Uncharacterised protein family UPF0061 domain containing protein.;Transcript_evidence=AK072187 (DDBJ%2C Best hit);ORF_evidence=Q67YJ0 (UniProt);InterPro=Uncharacterised protein family UPF0061 (IPR003846);NIAS_FLcDNA=J013145E07;Expression=AK072187;TENOR=Os06t0320700-01;KEGG=Os06t0320700-01
Chr06	irgsp1_rep	five_prime_UTR	12462586	12462588	.	-	.	Parent=Os06t0320700-01
Chr06	irgsp1_rep	CDS	12462256	12462585	.	-	0	Parent=Os06t0320700-01
Chr06	irgsp1_rep	CDS	12462034	12462143	.	-	0	Parent=Os06t0320700-01
Chr06	irgsp1_rep	CDS	12460767	12460823	.	-	1	Parent=Os06t0320700-01
Chr06	irgsp1_rep	CDS	12460384	12460683	.	-	1	Parent=Os06t0320700-01
Chr06	irgsp1_rep	CDS	12458670	12458917	.	-	1	Parent=Os06t0320700-01
Chr06	irgsp1_rep	CDS	12458275	12458581	.	-	2	Parent=Os06t0320700-01
Chr06	irgsp1_rep	CDS	12457916	12458189	.	-	1	Parent=Os06t0320700-01
Chr06	irgsp1_rep	CDS	12457138	12457392	.	-	0	Parent=Os06t0320700-01
Chr06	irgsp1_rep	three_prime_UTR	12456786	12457137	.	-	.	Parent=Os06t0320700-01
Chr06	irgsp1_rep	mRNA	12471713	12476482	.	+	.	ID=Os06t0320801-01;Name=Os06t0320801-01;Locus_id=Os06g0320801;Note=Hypothetical gene.;Transcript_evidence=AK318575 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090046B04;TENOR=Os06t0320801-01;KEGG=Os06t0320801-01
Chr06	irgsp1_rep	five_prime_UTR	12471713	12473728	.	+	.	Parent=Os06t0320801-01
Chr06	irgsp1_rep	five_prime_UTR	12473837	12474003	.	+	.	Parent=Os06t0320801-01
Chr06	irgsp1_rep	five_prime_UTR	12474547	12475641	.	+	.	Parent=Os06t0320801-01
Chr06	irgsp1_rep	CDS	12475642	12476058	.	+	0	Parent=Os06t0320801-01
Chr06	irgsp1_rep	three_prime_UTR	12476059	12476482	.	+	.	Parent=Os06t0320801-01
Chr06	irgsp1_rep	mRNA	12473263	12474016	.	-	.	ID=Os06t0320850-00;Name=Os06t0320850-00;Locus_id=Os06g0320850;Note=Chaperonin Cpn60/TCP-1 domain containing protein.;Transcript_evidence=AF420409 (DDBJ);ORF_evidence=XP_002334928.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Biological Process: cellular protein metabolic process (GO:0044267),Molecular Function: ATP binding (GO:0005524),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Chaperonin Cpn60/TCP-1 (IPR002423),T-complex protein 1%2C eta subunit (IPR012720);TENOR=Os06t0320850-00
Chr06	irgsp1_rep	five_prime_UTR	12474004	12474016	.	-	.	Parent=Os06t0320850-00
Chr06	irgsp1_rep	CDS	12473837	12474003	.	-	0	Parent=Os06t0320850-00
Chr06	irgsp1_rep	CDS	12473701	12473728	.	-	1	Parent=Os06t0320850-00
Chr06	irgsp1_rep	three_prime_UTR	12473452	12473700	.	-	.	Parent=Os06t0320850-00
Chr06	irgsp1_rep	three_prime_UTR	12473263	12473332	.	-	.	Parent=Os06t0320850-00
Chr06	irgsp1_rep	mRNA	12475835	12476347	.	-	.	ID=Os06t0320900-00;Name=Os06t0320900-00;Locus_id=Os06g0320900;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5ZA95 (UniProt);TENOR=Os06t0320900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	12475835	12476347	.	-	0	Parent=Os06t0320900-00
Chr06	irgsp1_rep	mRNA	12537158	12538530	.	+	.	ID=Os06t0321700-01;Name=Os06t0321700-01;Locus_id=Os06g0321700;Note=Aminoacyl-tRNA synthetase%2C class I%2C conserved site domain containing protein.;Transcript_evidence=AK109831 (DDBJ%2C Best hit);ORF_evidence=A2YCC2 (UniProt);NIAS_FLcDNA=002-148-C06;Expression=AK109831;TENOR=Os06t0321700-01;KEGG=Os06t0321700-01
Chr06	irgsp1_rep	five_prime_UTR	12537158	12537654	.	+	.	Parent=Os06t0321700-01
Chr06	irgsp1_rep	CDS	12537655	12538215	.	+	0	Parent=Os06t0321700-01
Chr06	irgsp1_rep	three_prime_UTR	12538216	12538530	.	+	.	Parent=Os06t0321700-01
Chr06	irgsp1_rep	mRNA	12572595	12574252	.	+	.	ID=Os06t0322400-00;Name=Os06t0322400-00;Locus_id=Os06g0322400;Note=Similar to H1005F08.15 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01MM9 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=SAM dependent carboxyl methyltransferase (IPR005299);TENOR=Os06t0322400-00
Chr06	irgsp1_rep	CDS	12572595	12572678	.	+	0	Parent=Os06t0322400-00
Chr06	irgsp1_rep	CDS	12572901	12573128	.	+	0	Parent=Os06t0322400-00
Chr06	irgsp1_rep	CDS	12573617	12574252	.	+	0	Parent=Os06t0322400-00
Chr06	irgsp1_rep	mRNA	12604824	12606640	.	+	.	ID=Os06t0323100-01;Name=Os06t0323100-01;Locus_id=Os06g0323100;Oryzabase Gene Name Synonym(s)=indole-3-acetate O-methyl- transferase 1-like%2C jasmonate O-methyltransferase;Note=Similar to H1005F08.18 protein.;Transcript_evidence=AK100029 (DDBJ%2C Best hit);ORF_evidence=Q01MM6 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=SAM dependent carboxyl methyltransferase (IPR005299);NIAS_FLcDNA=J013147J04;Oryzabase=23061;TENOR=Os06t0323100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	12604824	12604930	.	+	.	Parent=Os06t0323100-01
Chr06	irgsp1_rep	CDS	12604931	12604937	.	+	0	Parent=Os06t0323100-01
Chr06	irgsp1_rep	CDS	12605152	12605582	.	+	2	Parent=Os06t0323100-01
Chr06	irgsp1_rep	CDS	12605892	12606530	.	+	0	Parent=Os06t0323100-01
Chr06	irgsp1_rep	three_prime_UTR	12606531	12606640	.	+	.	Parent=Os06t0323100-01
Chr06	irgsp1_rep	mRNA	12628359	12629187	.	+	.	ID=Os06t0323550-00;Name=Os06t0323550-00;Locus_id=Os06g0323550;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);InterPro=Ribonuclease H1%2C N-terminal (IPR011320);TENOR=Os06t0323550-00
Chr06	irgsp1_rep	five_prime_UTR	12628359	12628362	.	+	.	Parent=Os06t0323550-00
Chr06	irgsp1_rep	CDS	12628363	12629187	.	+	0	Parent=Os06t0323550-00
Chr06	irgsp1_rep	mRNA	12651333	12652636	.	-	.	ID=Os06t0324000-01;Name=Os06t0324000-01;Locus_id=Os06g0324000;Note=Conserved hypothetical protein.;Transcript_evidence=AK109614 (DDBJ%2C Best hit);ORF_evidence=NP_001172864.1 (RefSeq);NIAS_FLcDNA=002-137-G10;TENOR=Os06t0324000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	12651526	12652636	.	-	.	Parent=Os06t0324000-01
Chr06	irgsp1_rep	CDS	12651376	12651525	.	-	0	Parent=Os06t0324000-01
Chr06	irgsp1_rep	three_prime_UTR	12651333	12651375	.	-	.	Parent=Os06t0324000-01
Chr06	irgsp1_rep	mRNA	12655602	12660382	.	-	.	ID=Os06t0324150-01;Name=Os06t0324150-01;Locus_id=Os06g0324150;Note=TGF-beta receptor%2C type I/II extracellular region family protein.;Transcript_evidence=AK242131 (DDBJ%2C Best hit);ORF_evidence=Q2HUR9 (UniProt);NIAS_FLcDNA=J075149B08;TENOR=Os06t0324150-01;KEGG=Os06t0324150-01
Chr06	irgsp1_rep	five_prime_UTR	12660131	12660382	.	-	.	Parent=Os06t0324150-01
Chr06	irgsp1_rep	CDS	12660128	12660130	.	-	0	Parent=Os06t0324150-01
Chr06	irgsp1_rep	CDS	12657357	12657419	.	-	0	Parent=Os06t0324150-01
Chr06	irgsp1_rep	CDS	12655705	12655893	.	-	0	Parent=Os06t0324150-01
Chr06	irgsp1_rep	three_prime_UTR	12655602	12655704	.	-	.	Parent=Os06t0324150-01
Chr06	irgsp1_rep	mRNA	12657145	12659105	.	+	.	ID=Os06t0324300-00;Name=Os06t0324300-00;Locus_id=Os06g0324300;Note=Similar to predicted protein.;Transcript_evidence=BT067372 (DDBJ);ORF_evidence=Q5Z774 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);Oryzabase=16224;TENOR=Os06t0324300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	12657145	12657384	.	+	0	Parent=Os06t0324300-00
Chr06	irgsp1_rep	CDS	12657664	12659094	.	+	0	Parent=Os06t0324300-00
Chr06	irgsp1_rep	three_prime_UTR	12659095	12659105	.	+	.	Parent=Os06t0324300-00
Chr06	irgsp1_rep	mRNA	12665605	12666203	.	-	.	ID=Os06t0324400-01;Name=Os06t0324400-01;Locus_id=Os06g0324400;CGSNL Gene Symbol=LEA3;CGSNL Gene Name=LATE EMBRYOGENESIS ABUNDANT PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsLEA3%2C OsEnS-84;Oryzabase Gene Name Synonym(s)=late embryogenesis abundant protein 3%2C endosperm-specific gene 84;Note=Late embryogenesis abundant (LEA) group 1 family protein.;Transcript_evidence=AK063726 (DDBJ%2C Best hit);ORF_evidence=A2YCC7 (UniProt);GO=Biological Process: embryo development (GO:0009790);InterPro=Late embryogenesis abundant protein%2C LEA-25/LEA-D113 (IPR005513);NIAS_FLcDNA=001-120-D12;Oryzabase=10172;Expression=AK063726;TENOR=Os06t0324400-01;KEGG=Os06t0324400-01
Chr06	irgsp1_rep	five_prime_UTR	12666124	12666203	.	-	.	Parent=Os06t0324400-01
Chr06	irgsp1_rep	CDS	12666037	12666123	.	-	0	Parent=Os06t0324400-01
Chr06	irgsp1_rep	CDS	12665801	12665959	.	-	0	Parent=Os06t0324400-01
Chr06	irgsp1_rep	three_prime_UTR	12665605	12665800	.	-	.	Parent=Os06t0324400-01
Chr06	irgsp1_rep	mRNA	12679380	12681614	.	-	.	ID=Os06t0324601-00;Name=Os06t0324601-00;Locus_id=Os06g0324601;Note=Hypothetical gene.;Transcript_evidence=BT086156 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0324601-00;KEGG=Os06t0324601-00
Chr06	irgsp1_rep	five_prime_UTR	12681517	12681614	.	-	.	Parent=Os06t0324601-00
Chr06	irgsp1_rep	CDS	12681316	12681516	.	-	0	Parent=Os06t0324601-00
Chr06	irgsp1_rep	CDS	12680776	12681028	.	-	0	Parent=Os06t0324601-00
Chr06	irgsp1_rep	CDS	12680101	12680111	.	-	2	Parent=Os06t0324601-00
Chr06	irgsp1_rep	three_prime_UTR	12679380	12680100	.	-	.	Parent=Os06t0324601-00
Chr06	irgsp1_rep	mRNA	12679375	12681799	.	+	.	ID=Os06t0324800-01;Name=Os06t0324800-01;Locus_id=Os06g0324800;RAP-DB Gene Symbol Synonym(s)=PT9%2C OsPT9%2C PHT1-9%2C OsPht1%3B9;RAP-DB Gene Name Synonym(s)=PHOSPHATE TRANSPORTER 9%2C Probable inorganic phosphate transporter 1-9;CGSNL Gene Symbol=PT9;CGSNL Gene Name=PHOSPHATE TRANSPORTER 9;Oryzabase Gene Symbol Synonym(s)=OsPT9%2C PHT1-9%2C OsPht1%3B9;Oryzabase Gene Name Synonym(s)=Probable inorganic phosphate transporter 1-9;Note=Phosphate transporter%2C Phosphate uptake;Transcript_evidence=AF536969;ORF_evidence=Q8H6G7;GO=Biological Process: transmembrane transport (GO:0055085),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Cellular Component: integral component of membrane (GO:0016021);InterPro=Major facilitator%2C  sugar transporter-like (IPR005828),Major facilitator superfamily domain (IPR020846),Sugar transporter%2C conserved site (IPR005829);Manual Curation=January 25%2C 2017;Literature_PMID=24344809;Oryzabase=8224;Expression=AK109109;TENOR=Os06t0324800-01;KEGG=Os06t0324800-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	12679375	12680093	.	+	0	Parent=Os06t0324800-01
Chr06	irgsp1_rep	CDS	12680770	12681799	.	+	1	Parent=Os06t0324800-01
Chr06	irgsp1_rep	mRNA	12691975	12694849	.	-	.	ID=Os06t0325200-01;Name=Os06t0325200-01;Locus_id=Os06g0325200;RAP-DB Gene Symbol Synonym(s)=PT10%2C OsPT10%2C PHT1-10%2C OsPht1%3B10;RAP-DB Gene Name Synonym(s)=PHOSPHATE TRANSPORTER 10%2C Probable inorganic phosphate transporter 1-10;CGSNL Gene Symbol=PT10;CGSNL Gene Name=PHOSPHATE TRANSPORTER 10;Oryzabase Gene Symbol Synonym(s)=OsPT10%2C PHT1-10%2C OsPht1%3B10;Oryzabase Gene Name Synonym(s)=Probable inorganic phosphate transporter 1-10;Note=Phosphate transporter%2C Phosphate uptake;Transcript_evidence=Inferred from literature;ORF_evidence=Q69T94;GO=Biological Process: transmembrane transport (GO:0055085),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Cellular Component: integral component of membrane (GO:0016021);InterPro=Major facilitator%2C  sugar transporter-like (IPR005828),Major facilitator superfamily domain (IPR020846),Sugar transporter%2C conserved site (IPR005829);Manual Curation=January 25%2C 2017;Literature_PMID=24344809;Oryzabase=8225;TENOR=Os06t0325200-00;KEGG=Os06t0325200-00
Chr06	irgsp1_rep	CDS	12694152	12694849	.	-	0	Parent=Os06t0325200-01
Chr06	irgsp1_rep	CDS	12692305	12693265	.	-	1	Parent=Os06t0325200-01
Chr06	irgsp1_rep	three_prime_UTR	12691975	12692304	.	-	.	Parent=Os06t0325200-01
Chr06	irgsp1_rep	mRNA	12692418	12694834	.	+	.	ID=Os06t0325350-00;Name=Os06t0325350-00;Locus_id=Os06g0325350;Note=Hypothetical gene.;Transcript_evidence=BT086132 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0325350-00;KEGG=Os06t0325350-00
Chr06	irgsp1_rep	five_prime_UTR	12692418	12692418	.	+	.	Parent=Os06t0325350-00
Chr06	irgsp1_rep	CDS	12692419	12693271	.	+	0	Parent=Os06t0325350-00
Chr06	irgsp1_rep	CDS	12694140	12694144	.	+	2	Parent=Os06t0325350-00
Chr06	irgsp1_rep	three_prime_UTR	12694145	12694834	.	+	.	Parent=Os06t0325350-00
Chr06	irgsp1_rep	mRNA	12708112	12713101	.	+	.	ID=Os06t0325500-01;Name=Os06t0325500-01;Locus_id=Os06g0325500;Note=Uncharacterised conserved protein UCP030210 domain containing protein.;Transcript_evidence=AK063974 (DDBJ%2C Best hit);ORF_evidence=NP_001149554.1 (RefSeq);InterPro=Domain of unknown function DUF89 (IPR002791),Uncharacterised conserved protein UCP030210 (IPR016949);NIAS_FLcDNA=001-124-B09;Expression=AK063974;TENOR=Os06t0325500-01;KEGG=Os06t0325500-01
Chr06	irgsp1_rep	five_prime_UTR	12708112	12708242	.	+	.	Parent=Os06t0325500-01
Chr06	irgsp1_rep	CDS	12708243	12708412	.	+	0	Parent=Os06t0325500-01
Chr06	irgsp1_rep	CDS	12708500	12708565	.	+	1	Parent=Os06t0325500-01
Chr06	irgsp1_rep	CDS	12709641	12709707	.	+	1	Parent=Os06t0325500-01
Chr06	irgsp1_rep	CDS	12709791	12709859	.	+	0	Parent=Os06t0325500-01
Chr06	irgsp1_rep	CDS	12709974	12710114	.	+	0	Parent=Os06t0325500-01
Chr06	irgsp1_rep	CDS	12710405	12710533	.	+	0	Parent=Os06t0325500-01
Chr06	irgsp1_rep	CDS	12711205	12711291	.	+	0	Parent=Os06t0325500-01
Chr06	irgsp1_rep	CDS	12711867	12711941	.	+	0	Parent=Os06t0325500-01
Chr06	irgsp1_rep	CDS	12712042	12712119	.	+	0	Parent=Os06t0325500-01
Chr06	irgsp1_rep	CDS	12712217	12712294	.	+	0	Parent=Os06t0325500-01
Chr06	irgsp1_rep	CDS	12712376	12712438	.	+	0	Parent=Os06t0325500-01
Chr06	irgsp1_rep	CDS	12712544	12712618	.	+	0	Parent=Os06t0325500-01
Chr06	irgsp1_rep	three_prime_UTR	12712619	12713101	.	+	.	Parent=Os06t0325500-01
Chr06	irgsp1_rep	mRNA	12708190	12713042	.	+	.	ID=Os06t0325500-02;Name=Os06t0325500-02;Locus_id=Os06g0325500;Note=Uncharacterised conserved protein UCP030210 domain containing protein.;Transcript_evidence=AK099286 (DDBJ%2C Best hit);ORF_evidence=NP_001149554.1 (RefSeq);InterPro=Domain of unknown function DUF89 (IPR002791),Uncharacterised conserved protein UCP030210 (IPR016949);NIAS_FLcDNA=J023134A07;Expression=AK099286;TENOR=Os06t0325500-02;KEGG=Os06t0325500-02
Chr06	irgsp1_rep	five_prime_UTR	12708190	12708242	.	+	.	Parent=Os06t0325500-02
Chr06	irgsp1_rep	CDS	12708243	12708412	.	+	0	Parent=Os06t0325500-02
Chr06	irgsp1_rep	CDS	12708500	12708565	.	+	1	Parent=Os06t0325500-02
Chr06	irgsp1_rep	CDS	12709641	12709707	.	+	1	Parent=Os06t0325500-02
Chr06	irgsp1_rep	CDS	12709791	12709859	.	+	0	Parent=Os06t0325500-02
Chr06	irgsp1_rep	CDS	12709974	12710114	.	+	0	Parent=Os06t0325500-02
Chr06	irgsp1_rep	CDS	12710405	12710533	.	+	0	Parent=Os06t0325500-02
Chr06	irgsp1_rep	CDS	12711205	12711291	.	+	0	Parent=Os06t0325500-02
Chr06	irgsp1_rep	CDS	12711867	12711941	.	+	0	Parent=Os06t0325500-02
Chr06	irgsp1_rep	CDS	12712042	12712119	.	+	0	Parent=Os06t0325500-02
Chr06	irgsp1_rep	CDS	12712217	12712294	.	+	0	Parent=Os06t0325500-02
Chr06	irgsp1_rep	CDS	12712376	12712438	.	+	0	Parent=Os06t0325500-02
Chr06	irgsp1_rep	CDS	12712544	12712618	.	+	0	Parent=Os06t0325500-02
Chr06	irgsp1_rep	three_prime_UTR	12712619	12713042	.	+	.	Parent=Os06t0325500-02
Chr06	irgsp1_rep	mRNA	12729396	12731865	.	-	.	ID=Os06t0325602-00;Name=Os06t0325602-00;Locus_id=Os06g0325602;Note=Hypothetical gene.;Transcript_evidence=CT841595 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os06t0325602-00;KEGG=Os06t0325602-00
Chr06	irgsp1_rep	five_prime_UTR	12731865	12731865	.	-	.	Parent=Os06t0325602-00
Chr06	irgsp1_rep	CDS	12731625	12731864	.	-	0	Parent=Os06t0325602-00
Chr06	irgsp1_rep	three_prime_UTR	12731265	12731624	.	-	.	Parent=Os06t0325602-00
Chr06	irgsp1_rep	three_prime_UTR	12730878	12730943	.	-	.	Parent=Os06t0325602-00
Chr06	irgsp1_rep	three_prime_UTR	12729593	12729759	.	-	.	Parent=Os06t0325602-00
Chr06	irgsp1_rep	three_prime_UTR	12729396	12729563	.	-	.	Parent=Os06t0325602-00
Chr06	irgsp1_rep	mRNA	12739037	12739485	.	-	.	ID=Os06t0325700-01;Name=Os06t0325700-01;Locus_id=Os06g0325700;Note=Conserved hypothetical protein.;Transcript_evidence=AK111131 (DDBJ%2C Best hit);ORF_evidence=B9FT05 (UniProt);NIAS_FLcDNA=002-176-D02;TENOR=Os06t0325700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	12739485	12739485	.	-	.	Parent=Os06t0325700-01
Chr06	irgsp1_rep	CDS	12739062	12739484	.	-	0	Parent=Os06t0325700-01
Chr06	irgsp1_rep	three_prime_UTR	12739037	12739061	.	-	.	Parent=Os06t0325700-01
Chr06	irgsp1_rep	mRNA	12751652	12753404	.	+	.	ID=Os06t0325900-00;Name=Os06t0325900-00;Locus_id=Os06g0325900;Note=Similar to Bx2-like protein.;Transcript_evidence=AF123601 (DDBJ);ORF_evidence=Q8S9E5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os06t0325900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	12751652	12753286	.	+	0	Parent=Os06t0325900-00
Chr06	irgsp1_rep	three_prime_UTR	12753287	12753404	.	+	.	Parent=Os06t0325900-00
Chr06	irgsp1_rep	mRNA	12751760	12753434	.	-	.	ID=Os06t0325950-00;Name=Os06t0325950-00;Locus_id=Os06g0325950;Note=Non-protein coding transcript.;Transcript_evidence=tplb0042b08 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os06t0325950-00
Chr06	irgsp1_rep	exon	12751760	12753434	.	-	.	Parent=Os06t0325950-00
Chr06	irgsp1_rep	mRNA	12758542	12763661	.	-	.	ID=Os06t0326000-01;Name=Os06t0326000-01;Locus_id=Os06g0326000;Note=Protein of unknown function DUF296 domain containing protein.;Transcript_evidence=AK121658 (DDBJ%2C Best hit);ORF_evidence=A2YCD5 (UniProt);GO=Molecular Function: DNA binding (GO:0003677);InterPro=Domain of unknown function DUF296 (IPR005175),AT hook%2C DNA-binding motif (IPR017956);NIAS_FLcDNA=J033063K21;Expression=AK121658;TENOR=Os06t0326000-01;KEGG=Os06t0326000-01
Chr06	irgsp1_rep	five_prime_UTR	12763591	12763661	.	-	.	Parent=Os06t0326000-01
Chr06	irgsp1_rep	CDS	12763011	12763590	.	-	0	Parent=Os06t0326000-01
Chr06	irgsp1_rep	CDS	12761807	12761859	.	-	2	Parent=Os06t0326000-01
Chr06	irgsp1_rep	CDS	12760512	12760643	.	-	0	Parent=Os06t0326000-01
Chr06	irgsp1_rep	CDS	12759438	12759599	.	-	0	Parent=Os06t0326000-01
Chr06	irgsp1_rep	CDS	12758928	12759137	.	-	0	Parent=Os06t0326000-01
Chr06	irgsp1_rep	three_prime_UTR	12758542	12758927	.	-	.	Parent=Os06t0326000-01
Chr06	irgsp1_rep	mRNA	12794383	12800188	.	+	.	ID=Os06t0326400-01;Name=Os06t0326400-01;Locus_id=Os06g0326400;CGSNL Gene Symbol=PFPA2;CGSNL Gene Name=PYROPHOSPHATE-FRUCTOSE-6-PHOSPHATEPHOSPHOTRANSFERASE ALPHA SUBUNIT 2;Oryzabase Gene Symbol Synonym(s)=OsPFPA2%2C OsPFP1a2%2C PFP1a2;Oryzabase Gene Name Synonym(s)=pyrophosphate-fructose-6-phosphatephosphotransferase alpha subunit 2%2C PFP-alpha subunit 2%2C catalytic a-subunit 2 of PFP1;Note=Phosphofructokinase domain containing protein.;Transcript_evidence=AK121116 (DDBJ%2C Best hit),AK065052 (DDBJ%2C Best hit);ORF_evidence=B6SHF8 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Cellular Component: 6-phosphofructokinase complex (GO:0005945),Molecular Function: 6-phosphofructokinase activity (GO:0003872),Molecular Function: ATP binding (GO:0005524),Molecular Function: diphosphate-fructose-6-phosphate 1-phosphotransferase activity (GO:0047334);InterPro=Phosphofructokinase domain (IPR000023),Pyrophosphate-dependent phosphofructokinase PfpB (IPR011183),Pyrophosphate-dependent phosphofructokinase%2C alpha-helical (IPR013981),Phosphofructokinase (IPR022953);NIAS_FLcDNA=J023073P04,J013001I21;Oryzabase=19619;TENOR=Os06t0326400-01
Chr06	irgsp1_rep	five_prime_UTR	12794383	12794474	.	+	.	Parent=Os06t0326400-01
Chr06	irgsp1_rep	CDS	12794475	12794579	.	+	0	Parent=Os06t0326400-01
Chr06	irgsp1_rep	CDS	12795311	12795483	.	+	0	Parent=Os06t0326400-01
Chr06	irgsp1_rep	CDS	12795834	12795946	.	+	1	Parent=Os06t0326400-01
Chr06	irgsp1_rep	CDS	12796328	12796516	.	+	2	Parent=Os06t0326400-01
Chr06	irgsp1_rep	CDS	12796600	12796667	.	+	2	Parent=Os06t0326400-01
Chr06	irgsp1_rep	CDS	12796804	12796887	.	+	0	Parent=Os06t0326400-01
Chr06	irgsp1_rep	CDS	12796994	12797047	.	+	0	Parent=Os06t0326400-01
Chr06	irgsp1_rep	CDS	12797648	12797728	.	+	0	Parent=Os06t0326400-01
Chr06	irgsp1_rep	CDS	12797818	12797911	.	+	0	Parent=Os06t0326400-01
Chr06	irgsp1_rep	CDS	12798033	12798106	.	+	2	Parent=Os06t0326400-01
Chr06	irgsp1_rep	CDS	12798179	12798289	.	+	0	Parent=Os06t0326400-01
Chr06	irgsp1_rep	CDS	12798375	12798416	.	+	0	Parent=Os06t0326400-01
Chr06	irgsp1_rep	CDS	12798499	12798558	.	+	0	Parent=Os06t0326400-01
Chr06	irgsp1_rep	CDS	12798661	12798765	.	+	0	Parent=Os06t0326400-01
Chr06	irgsp1_rep	CDS	12798859	12798975	.	+	0	Parent=Os06t0326400-01
Chr06	irgsp1_rep	CDS	12799103	12799206	.	+	0	Parent=Os06t0326400-01
Chr06	irgsp1_rep	CDS	12799432	12799597	.	+	1	Parent=Os06t0326400-01
Chr06	irgsp1_rep	CDS	12799716	12799844	.	+	0	Parent=Os06t0326400-01
Chr06	irgsp1_rep	three_prime_UTR	12799845	12800188	.	+	.	Parent=Os06t0326400-01
Chr06	irgsp1_rep	mRNA	12801432	12804021	.	+	.	ID=Os06t0326500-01;Name=Os06t0326500-01;Locus_id=Os06g0326500;Note=Mitochondrial glycoprotein family protein.;Transcript_evidence=AK068142 (DDBJ%2C Best hit);ORF_evidence=B6TFV4 (UniProt);GO=Cellular Component: mitochondrial matrix (GO:0005759);InterPro=Mitochondrial glycoprotein (IPR003428);NIAS_FLcDNA=J013134C08;Expression=AK068142;TENOR=Os06t0326500-01;KEGG=Os06t0326500-01
Chr06	irgsp1_rep	five_prime_UTR	12801432	12801472	.	+	.	Parent=Os06t0326500-01
Chr06	irgsp1_rep	CDS	12801473	12801784	.	+	0	Parent=Os06t0326500-01
Chr06	irgsp1_rep	CDS	12802920	12803257	.	+	0	Parent=Os06t0326500-01
Chr06	irgsp1_rep	CDS	12803533	12803692	.	+	1	Parent=Os06t0326500-01
Chr06	irgsp1_rep	three_prime_UTR	12803693	12804021	.	+	.	Parent=Os06t0326500-01
Chr06	irgsp1_rep	mRNA	12801438	12803185	.	+	.	ID=Os06t0326500-02;Name=Os06t0326500-02;Locus_id=Os06g0326500;Note=Similar to mitochondrial glycoprotein.;Transcript_evidence=AK071483 (DDBJ%2C Best hit);ORF_evidence=B6TFV4 (UniProt);GO=Cellular Component: mitochondrial matrix (GO:0005759);InterPro=Mitochondrial glycoprotein (IPR003428);NIAS_FLcDNA=J023094P22;TENOR=Os06t0326500-02
Chr06	irgsp1_rep	five_prime_UTR	12801438	12801472	.	+	.	Parent=Os06t0326500-02
Chr06	irgsp1_rep	CDS	12801473	12801784	.	+	0	Parent=Os06t0326500-02
Chr06	irgsp1_rep	CDS	12802920	12803185	.	+	0	Parent=Os06t0326500-02
Chr06	irgsp1_rep	mRNA	12809778	12812419	.	+	.	ID=Os06t0326700-01;Name=Os06t0326700-01;Locus_id=Os06g0326700;Note=Diacylglycerol acyltransferase family protein.;Transcript_evidence=AK101908 (DDBJ%2C Best hit);ORF_evidence=B6SM73 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Phospholipid/glycerol acyltransferase (IPR002123),Diacylglycerol acyltransferase (IPR007130);NIAS_FLcDNA=J033071F02;Expression=AK101908;TENOR=Os06t0326700-01;KEGG=Os06t0326700-01
Chr06	irgsp1_rep	five_prime_UTR	12809778	12809856	.	+	.	Parent=Os06t0326700-01
Chr06	irgsp1_rep	CDS	12809857	12810080	.	+	0	Parent=Os06t0326700-01
Chr06	irgsp1_rep	CDS	12810167	12810238	.	+	1	Parent=Os06t0326700-01
Chr06	irgsp1_rep	CDS	12810329	12810417	.	+	1	Parent=Os06t0326700-01
Chr06	irgsp1_rep	CDS	12810627	12810733	.	+	2	Parent=Os06t0326700-01
Chr06	irgsp1_rep	CDS	12810840	12810995	.	+	0	Parent=Os06t0326700-01
Chr06	irgsp1_rep	CDS	12811136	12811222	.	+	0	Parent=Os06t0326700-01
Chr06	irgsp1_rep	CDS	12811450	12811547	.	+	0	Parent=Os06t0326700-01
Chr06	irgsp1_rep	CDS	12811670	12811757	.	+	1	Parent=Os06t0326700-01
Chr06	irgsp1_rep	CDS	12812013	12812114	.	+	0	Parent=Os06t0326700-01
Chr06	irgsp1_rep	three_prime_UTR	12812115	12812419	.	+	.	Parent=Os06t0326700-01
Chr06	irgsp1_rep	mRNA	12825419	12827564	.	+	.	ID=Os06t0326900-01;Name=Os06t0326900-01;Locus_id=Os06g0326900;Note=Protein of unknown function DUF296 domain containing protein.;Transcript_evidence=AK242108 (DDBJ%2C Best hit);ORF_evidence=NP_001151240.1 (RefSeq);InterPro=Domain of unknown function DUF296 (IPR005175),Predicted AT-hook DNA-binding (IPR014476);NIAS_FLcDNA=J075145I05;TENOR=Os06t0326900-01;KEGG=Os06t0326900-01
Chr06	irgsp1_rep	five_prime_UTR	12825419	12825615	.	+	.	Parent=Os06t0326900-01
Chr06	irgsp1_rep	five_prime_UTR	12825745	12825825	.	+	.	Parent=Os06t0326900-01
Chr06	irgsp1_rep	CDS	12825826	12826794	.	+	0	Parent=Os06t0326900-01
Chr06	irgsp1_rep	three_prime_UTR	12826795	12827564	.	+	.	Parent=Os06t0326900-01
Chr06	irgsp1_rep	mRNA	12848698	12852769	.	-	.	ID=Os06t0327300-01;Name=Os06t0327300-01;Locus_id=Os06g0327300;CGSNL Gene Symbol=NTRA;CGSNL Gene Name=NADPH-DEPENDENT THIOREDOXIN REDUCTASE A;Oryzabase Gene Symbol Synonym(s)=OsNTRA%2C NtrA;Oryzabase Gene Name Synonym(s)=NADPH-dependent thioredoxin reductase A%2C NADP-thioredoxin reductase A;Note=Similar to Thioredoxin reductase.;Transcript_evidence=AK106368 (DDBJ%2C Best hit);ORF_evidence=B8B1A9 (UniProt);NIAS_FLcDNA=002-102-C03;Oryzabase=14371;TENOR=Os06t0327300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	12852751	12852769	.	-	.	Parent=Os06t0327300-01
Chr06	irgsp1_rep	CDS	12852706	12852750	.	-	0	Parent=Os06t0327300-01
Chr06	irgsp1_rep	CDS	12851762	12852622	.	-	0	Parent=Os06t0327300-01
Chr06	irgsp1_rep	three_prime_UTR	12851715	12851761	.	-	.	Parent=Os06t0327300-01
Chr06	irgsp1_rep	three_prime_UTR	12848698	12848992	.	-	.	Parent=Os06t0327300-01
Chr06	irgsp1_rep	mRNA	12859939	12860605	.	-	.	ID=Os06t0327400-00;Name=Os06t0327400-00;Locus_id=Os06g0327400;Note=Conserved hypothetical protein.;Transcript_evidence=EU968736 (DDBJ);ORF_evidence=Q69PS5 (UniProt);TENOR=Os06t0327400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	12860370	12860605	.	-	0	Parent=Os06t0327400-00
Chr06	irgsp1_rep	CDS	12859939	12860311	.	-	1	Parent=Os06t0327400-00
Chr06	irgsp1_rep	mRNA	12919155	12919710	.	+	.	ID=Os06t0328200-00;Name=Os06t0328200-00;Locus_id=Os06g0328200;Note=Conserved hypothetical protein.;Transcript_evidence=EU945030 (DDBJ);ORF_evidence=B9F6M4 (UniProt);TENOR=Os06t0328200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	12919155	12919522	.	+	0	Parent=Os06t0328200-00
Chr06	irgsp1_rep	CDS	12919644	12919647	.	+	1	Parent=Os06t0328200-00
Chr06	irgsp1_rep	three_prime_UTR	12919648	12919710	.	+	.	Parent=Os06t0328200-00
Chr06	irgsp1_rep	mRNA	12931779	12934367	.	+	.	ID=Os06t0328400-01;Name=Os06t0328400-01;Locus_id=Os06g0328400;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK121604 (DDBJ%2C Best hit),AK110325 (DDBJ%2C Best hit);ORF_evidence=B8B1B3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033041O05,002-164-D06;TENOR=Os06t0328400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	12931779	12931804	.	+	.	Parent=Os06t0328400-01
Chr06	irgsp1_rep	CDS	12931805	12933173	.	+	0	Parent=Os06t0328400-01
Chr06	irgsp1_rep	CDS	12933261	12934186	.	+	2	Parent=Os06t0328400-01
Chr06	irgsp1_rep	three_prime_UTR	12934187	12934367	.	+	.	Parent=Os06t0328400-01
Chr06	irgsp1_rep	mRNA	12943584	12946181	.	+	.	ID=Os06t0328650-01;Name=Os06t0328650-01;Locus_id=Os06g0328650;Note=Similar to H0811D08.9 protein.;Transcript_evidence=AK288781 (DDBJ%2C Best hit);ORF_evidence=Q25AN6 (UniProt);GO=Molecular Function: DNA binding (GO:0003677);InterPro=Zinc finger%2C BED-type predicted (IPR003656);NIAS_FLcDNA=J090069C22;TENOR=Os06t0328650-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	12943584	12945772	.	+	.	Parent=Os06t0328650-01
Chr06	irgsp1_rep	CDS	12945773	12945988	.	+	0	Parent=Os06t0328650-01
Chr06	irgsp1_rep	three_prime_UTR	12945989	12946181	.	+	.	Parent=Os06t0328650-01
Chr06	irgsp1_rep	mRNA	12962885	12966473	.	+	.	ID=Os06t0328800-01;Name=Os06t0328800-01;Locus_id=Os06g0328800;Note=Protein of unknown function DUF23 family protein.;Transcript_evidence=AK101557 (DDBJ%2C Best hit),AK065974 (DDBJ%2C Best hit);ORF_evidence=F2EKC2 (UniProt);InterPro=Domain of unknown function DUF23 (IPR008166);NIAS_FLcDNA=J033050C11,J013049H12;TENOR=Os06t0328800-01
Chr06	irgsp1_rep	five_prime_UTR	12962885	12962990	.	+	.	Parent=Os06t0328800-01
Chr06	irgsp1_rep	CDS	12962991	12964210	.	+	0	Parent=Os06t0328800-01
Chr06	irgsp1_rep	CDS	12965711	12966056	.	+	1	Parent=Os06t0328800-01
Chr06	irgsp1_rep	three_prime_UTR	12966057	12966473	.	+	.	Parent=Os06t0328800-01
Chr06	irgsp1_rep	mRNA	12962981	12966133	.	-	.	ID=Os06t0328850-00;Name=Os06t0328850-00;Locus_id=Os06g0328850;Note=Hypothetical protein.;Transcript_evidence=tplb0026g02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0328850-00
Chr06	irgsp1_rep	five_prime_UTR	12965709	12966133	.	-	.	Parent=Os06t0328850-00
Chr06	irgsp1_rep	five_prime_UTR	12963460	12964208	.	-	.	Parent=Os06t0328850-00
Chr06	irgsp1_rep	CDS	12963115	12963459	.	-	0	Parent=Os06t0328850-00
Chr06	irgsp1_rep	three_prime_UTR	12962981	12963114	.	-	.	Parent=Os06t0328850-00
Chr06	irgsp1_rep	mRNA	12967330	12968406	.	-	.	ID=Os06t0328900-01;Name=Os06t0328900-01;Locus_id=Os06g0328900;Note=CytoChrome P450 family protein.;Transcript_evidence=AK110659 (DDBJ%2C Best hit);ORF_evidence=C3SAE5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=002-169-E12;Expression=AK110659;TENOR=Os06t0328900-01;KEGG=Os06t0328900-01
Chr06	irgsp1_rep	five_prime_UTR	12968406	12968406	.	-	.	Parent=Os06t0328900-01
Chr06	irgsp1_rep	CDS	12967533	12968405	.	-	0	Parent=Os06t0328900-01
Chr06	irgsp1_rep	three_prime_UTR	12967330	12967532	.	-	.	Parent=Os06t0328900-01
Chr06	irgsp1_rep	mRNA	12967600	12969077	.	+	.	ID=Os06t0328966-00;Name=Os06t0328966-00;Locus_id=Os06g0328966;Note=Hypothetical protein.;Transcript_evidence=AK357549 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0328966-00
Chr06	irgsp1_rep	five_prime_UTR	12967600	12967985	.	+	.	Parent=Os06t0328966-00
Chr06	irgsp1_rep	CDS	12967986	12969041	.	+	0	Parent=Os06t0328966-00
Chr06	irgsp1_rep	three_prime_UTR	12969042	12969077	.	+	.	Parent=Os06t0328966-00
Chr06	irgsp1_rep	mRNA	12991051	13000888	.	-	.	ID=Os06t0329200-01;Name=Os06t0329200-01;Locus_id=Os06g0329200;Note=Conserved hypothetical protein.;Transcript_evidence=AK068852 (DDBJ%2C Best hit);ORF_evidence=B9FT16 (UniProt);NIAS_FLcDNA=J013166K16;TENOR=Os06t0329200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	13000888	13000888	.	-	.	Parent=Os06t0329200-01
Chr06	irgsp1_rep	CDS	13000837	13000887	.	-	0	Parent=Os06t0329200-01
Chr06	irgsp1_rep	CDS	13000617	13000708	.	-	0	Parent=Os06t0329200-01
Chr06	irgsp1_rep	CDS	13000385	13000509	.	-	1	Parent=Os06t0329200-01
Chr06	irgsp1_rep	CDS	12993992	12994002	.	-	2	Parent=Os06t0329200-01
Chr06	irgsp1_rep	three_prime_UTR	12993852	12993991	.	-	.	Parent=Os06t0329200-01
Chr06	irgsp1_rep	three_prime_UTR	12992981	12993710	.	-	.	Parent=Os06t0329200-01
Chr06	irgsp1_rep	three_prime_UTR	12992822	12992900	.	-	.	Parent=Os06t0329200-01
Chr06	irgsp1_rep	three_prime_UTR	12992361	12992714	.	-	.	Parent=Os06t0329200-01
Chr06	irgsp1_rep	three_prime_UTR	12991733	12992275	.	-	.	Parent=Os06t0329200-01
Chr06	irgsp1_rep	three_prime_UTR	12991542	12991627	.	-	.	Parent=Os06t0329200-01
Chr06	irgsp1_rep	three_prime_UTR	12991390	12991465	.	-	.	Parent=Os06t0329200-01
Chr06	irgsp1_rep	three_prime_UTR	12991051	12991294	.	-	.	Parent=Os06t0329200-01
Chr06	irgsp1_rep	mRNA	12991051	12992139	.	-	.	ID=Os06t0329200-02;Name=Os06t0329200-02;Locus_id=Os06g0329200;Note=Hypothetical gene.;Transcript_evidence=AK058542 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-017-B09;Expression=AK058542;TENOR=Os06t0329200-02;KEGG=Os06t0329200-02
Chr06	irgsp1_rep	five_prime_UTR	12992072	12992139	.	-	.	Parent=Os06t0329200-02
Chr06	irgsp1_rep	CDS	12991808	12992071	.	-	0	Parent=Os06t0329200-02
Chr06	irgsp1_rep	three_prime_UTR	12991733	12991807	.	-	.	Parent=Os06t0329200-02
Chr06	irgsp1_rep	three_prime_UTR	12991542	12991627	.	-	.	Parent=Os06t0329200-02
Chr06	irgsp1_rep	three_prime_UTR	12991390	12991465	.	-	.	Parent=Os06t0329200-02
Chr06	irgsp1_rep	three_prime_UTR	12991051	12991294	.	-	.	Parent=Os06t0329200-02
Chr06	irgsp1_rep	mRNA	13003028	13003793	.	+	.	ID=Os06t0329300-01;Name=Os06t0329300-01;Locus_id=Os06g0329300;Note=Conserved hypothetical protein.;Transcript_evidence=AK067924 (DDBJ%2C Best hit);ORF_evidence=A2YCF3 (UniProt);NIAS_FLcDNA=J013122H17;Expression=AK067924;TENOR=Os06t0329300-01;KEGG=Os06t0329300-01
Chr06	irgsp1_rep	five_prime_UTR	13003028	13003059	.	+	.	Parent=Os06t0329300-01
Chr06	irgsp1_rep	CDS	13003060	13003509	.	+	0	Parent=Os06t0329300-01
Chr06	irgsp1_rep	three_prime_UTR	13003510	13003793	.	+	.	Parent=Os06t0329300-01
Chr06	irgsp1_rep	mRNA	13010100	13010587	.	-	.	ID=Os06t0329350-01;Name=Os06t0329350-01;Locus_id=Os06g0329350;Note=Conserved hypothetical protein.;Transcript_evidence=AK241887 (DDBJ%2C Best hit);ORF_evidence=NP_001174766.1 (RefSeq);NIAS_FLcDNA=J065219N02;TENOR=Os06t0329350-01;KEGG=Os06t0329350-01
Chr06	irgsp1_rep	CDS	13010306	13010587	.	-	0	Parent=Os06t0329350-01
Chr06	irgsp1_rep	three_prime_UTR	13010100	13010305	.	-	.	Parent=Os06t0329350-01
Chr06	irgsp1_rep	mRNA	13041900	13044158	.	+	.	ID=Os06t0329900-01;Name=Os06t0329900-01;Locus_id=Os06g0329900;Oryzabase Gene Name Synonym(s)=SABATH methyltransferase Group A1;Note=SAM dependent carboxyl methyltransferase family protein.;Transcript_evidence=AK068748 (DDBJ%2C Best hit);ORF_evidence=B8B1B7 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=SAM dependent carboxyl methyltransferase (IPR005299);NIAS_FLcDNA=J013159M15;Oryzabase=23382;Expression=AK068748;TENOR=Os06t0329900-01;KEGG=Os06t0329900-01
Chr06	irgsp1_rep	five_prime_UTR	13041900	13042129	.	+	.	Parent=Os06t0329900-01
Chr06	irgsp1_rep	CDS	13042130	13042204	.	+	0	Parent=Os06t0329900-01
Chr06	irgsp1_rep	CDS	13042525	13042911	.	+	0	Parent=Os06t0329900-01
Chr06	irgsp1_rep	CDS	13043304	13043570	.	+	0	Parent=Os06t0329900-01
Chr06	irgsp1_rep	CDS	13043679	13044050	.	+	0	Parent=Os06t0329900-01
Chr06	irgsp1_rep	three_prime_UTR	13044051	13044158	.	+	.	Parent=Os06t0329900-01
Chr06	irgsp1_rep	mRNA	13054818	13058041	.	-	.	ID=Os06t0330100-01;Name=Os06t0330100-01;Locus_id=Os06g0330100;RAP-DB Gene Symbol Synonym(s)=Pid3;RAP-DB Gene Name Synonym(s)=Pyricularia oryzae resistance D3;CGSNL Gene Symbol=PID3;CGSNL Gene Name=PYRICULARIA ORYZAE RESISTANCE D3;Oryzabase Gene Symbol Synonym(s)=Pi-d3%2C Pid3%2C Pi25%2C Pid3-I1%2C qBRM6.2;Oryzabase Gene Name Synonym(s)=Pyricularia oryzae resistance D3%2C Magnaporthe grisea resistance-D3%2C Blast resistance D3%2C Pyricularia oryzae resistance-d3;Note=Blast resistance protein%2C Pseudogene due to premature stop mutation (most japonica varieties)%2C Blast resistance;Transcript_evidence=FJ773286;ORF_evidence=C0LMX9;GO=Molecular Function: ADP binding (GO:0043531);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),Leucine-rich repeat domain superfamily (IPR032675),Virus X resistance protein-like%2C coiled-coil domain (IPR038005),NB-ARC (IPR002182);Manual Curation=April 3%2C 2018;Literature_PMID=28871108,19506306;Oryzabase=13055;TENOR=Os06t0330100-00
Chr06	irgsp1_rep	five_prime_UTR	13058028	13058041	.	-	.	Parent=Os06t0330100-01
Chr06	irgsp1_rep	CDS	13055817	13058027	.	-	0	Parent=Os06t0330100-01
Chr06	irgsp1_rep	three_prime_UTR	13054818	13055816	.	-	.	Parent=Os06t0330100-01
Chr06	irgsp1_rep	mRNA	13068019	13068107	.	+	.	ID=Os06t0330250-00;Name=Os06t0330250-00;Locus_id=Os06g0330250;Note=Non-protein coding transcript.;Transcript_evidence=FM878668 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0330250-00
Chr06	irgsp1_rep	exon	13068019	13068107	.	+	.	Parent=Os06t0330250-00
Chr06	irgsp1_rep	mRNA	13070021	13070937	.	-	.	ID=Os06t0330400-00;Name=Os06t0330400-00;Locus_id=Os06g0330400;Note=Fatty acid hydroxylase domain containing protein.;Transcript_evidence=BT009316 (DDBJ);ORF_evidence=NP_177122.2 (RefSeq);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Fatty acid hydroxylase (IPR006694);TENOR=Os06t0330400-00;KEGG=Os06t0330400-00 (EC:1.14.-.-)
Chr06	irgsp1_rep	five_prime_UTR	13070936	13070937	.	-	.	Parent=Os06t0330400-00
Chr06	irgsp1_rep	CDS	13070708	13070935	.	-	0	Parent=Os06t0330400-00
Chr06	irgsp1_rep	CDS	13070021	13070614	.	-	0	Parent=Os06t0330400-00
Chr06	irgsp1_rep	mRNA	13101545	13113917	.	-	.	ID=Os06t0331300-01;Name=Os06t0331300-01;Locus_id=Os06g0331300;Note=WD40 repeat domain containing protein.;Transcript_evidence=AK121512 (DDBJ%2C Best hit);ORF_evidence=B9FT21 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J033024N17;TENOR=Os06t0331300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	13113917	13113917	.	-	.	Parent=Os06t0331300-01
Chr06	irgsp1_rep	CDS	13112108	13113916	.	-	0	Parent=Os06t0331300-01
Chr06	irgsp1_rep	CDS	13111931	13112034	.	-	0	Parent=Os06t0331300-01
Chr06	irgsp1_rep	CDS	13110692	13110818	.	-	1	Parent=Os06t0331300-01
Chr06	irgsp1_rep	three_prime_UTR	13108125	13110691	.	-	.	Parent=Os06t0331300-01
Chr06	irgsp1_rep	three_prime_UTR	13107370	13107572	.	-	.	Parent=Os06t0331300-01
Chr06	irgsp1_rep	three_prime_UTR	13106709	13106832	.	-	.	Parent=Os06t0331300-01
Chr06	irgsp1_rep	three_prime_UTR	13104839	13105045	.	-	.	Parent=Os06t0331300-01
Chr06	irgsp1_rep	three_prime_UTR	13103227	13103485	.	-	.	Parent=Os06t0331300-01
Chr06	irgsp1_rep	three_prime_UTR	13102958	13103104	.	-	.	Parent=Os06t0331300-01
Chr06	irgsp1_rep	three_prime_UTR	13101545	13101985	.	-	.	Parent=Os06t0331300-01
Chr06	irgsp1_rep	mRNA	13101545	13112790	.	-	.	ID=Os06t0331300-02;Name=Os06t0331300-02;Locus_id=Os06g0331300;Note=Conserved hypothetical protein.;Transcript_evidence=AK073106 (DDBJ%2C Best hit);ORF_evidence=B9FT21 (UniProt);NIAS_FLcDNA=J033021C09;TENOR=Os06t0331300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	13112789	13112790	.	-	.	Parent=Os06t0331300-02
Chr06	irgsp1_rep	CDS	13112108	13112788	.	-	0	Parent=Os06t0331300-02
Chr06	irgsp1_rep	CDS	13111931	13112034	.	-	0	Parent=Os06t0331300-02
Chr06	irgsp1_rep	CDS	13110749	13110818	.	-	1	Parent=Os06t0331300-02
Chr06	irgsp1_rep	CDS	13108724	13108858	.	-	0	Parent=Os06t0331300-02
Chr06	irgsp1_rep	three_prime_UTR	13108125	13108723	.	-	.	Parent=Os06t0331300-02
Chr06	irgsp1_rep	three_prime_UTR	13107370	13107572	.	-	.	Parent=Os06t0331300-02
Chr06	irgsp1_rep	three_prime_UTR	13106709	13106832	.	-	.	Parent=Os06t0331300-02
Chr06	irgsp1_rep	three_prime_UTR	13104839	13105045	.	-	.	Parent=Os06t0331300-02
Chr06	irgsp1_rep	three_prime_UTR	13103227	13103485	.	-	.	Parent=Os06t0331300-02
Chr06	irgsp1_rep	three_prime_UTR	13102958	13103104	.	-	.	Parent=Os06t0331300-02
Chr06	irgsp1_rep	three_prime_UTR	13101545	13101985	.	-	.	Parent=Os06t0331300-02
Chr06	irgsp1_rep	mRNA	13120298	13120764	.	+	.	ID=Os06t0331500-01;Name=Os06t0331500-01;Locus_id=Os06g0331500;Note=Conserved hypothetical protein.;Transcript_evidence=AK242911 (DDBJ%2C Best hit);ORF_evidence=NP_001174400.1 (RefSeq);NIAS_FLcDNA=J090083D20;TENOR=Os06t0331500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	13120298	13120298	.	+	.	Parent=Os06t0331500-01
Chr06	irgsp1_rep	CDS	13120299	13120538	.	+	0	Parent=Os06t0331500-01
Chr06	irgsp1_rep	three_prime_UTR	13120539	13120764	.	+	.	Parent=Os06t0331500-01
Chr06	irgsp1_rep	mRNA	13143806	13146065	.	+	.	ID=Os06t0331900-01;Name=Os06t0331900-01;Locus_id=Os06g0331900;CGSNL Gene Symbol=ALMT9;CGSNL Gene Name=ALUMINUM-ACTIVATED MALATE TRANSPORTER 9;Oryzabase Gene Symbol Synonym(s)=OsALMT9;Oryzabase Gene Name Synonym(s)=Aluminum-activated malate transporter 9;Note=Uncharacterised protein family UPF0005 domain containing protein.;Transcript_evidence=AK120017 (DDBJ%2C Best hit);ORF_evidence=A5YBP9 (UniProt);GO=Biological Process: response to aluminum ion (GO:0010044);InterPro=Malate transporter%2C aliminium toerance (IPR020966);NIAS_FLcDNA=002-186-B10;Oryzabase=22158;Expression=AK120017;TENOR=Os06t0331900-01;KEGG=Os06t0331900-01
Chr06	irgsp1_rep	five_prime_UTR	13143806	13143887	.	+	.	Parent=Os06t0331900-01
Chr06	irgsp1_rep	CDS	13143888	13145894	.	+	0	Parent=Os06t0331900-01
Chr06	irgsp1_rep	three_prime_UTR	13145895	13146065	.	+	.	Parent=Os06t0331900-01
Chr06	irgsp1_rep	mRNA	13162901	13170755	.	+	.	ID=Os06t0332400-01;Name=Os06t0332400-01;Locus_id=Os06g0332400;Note=VHS domain containing protein.;Transcript_evidence=AK058294 (DDBJ%2C Best hit);ORF_evidence=NP_001151446.1 (RefSeq);GO=Biological Process: intracellular protein transport (GO:0006886),Cellular Component: intracellular (GO:0005622);InterPro=VHS (IPR002014),GAT (IPR004152),ENTH/VHS (IPR008942),VHS subgroup (IPR018205);NIAS_FLcDNA=001-013-F02;Expression=AK058294;TENOR=Os06t0332400-01;KEGG=Os06t0332400-01
Chr06	irgsp1_rep	five_prime_UTR	13162901	13163065	.	+	.	Parent=Os06t0332400-01
Chr06	irgsp1_rep	CDS	13163066	13163169	.	+	0	Parent=Os06t0332400-01
Chr06	irgsp1_rep	CDS	13164205	13164283	.	+	1	Parent=Os06t0332400-01
Chr06	irgsp1_rep	CDS	13165737	13165835	.	+	0	Parent=Os06t0332400-01
Chr06	irgsp1_rep	CDS	13165907	13166020	.	+	0	Parent=Os06t0332400-01
Chr06	irgsp1_rep	CDS	13166297	13166457	.	+	0	Parent=Os06t0332400-01
Chr06	irgsp1_rep	CDS	13166949	13167030	.	+	1	Parent=Os06t0332400-01
Chr06	irgsp1_rep	CDS	13167175	13167260	.	+	0	Parent=Os06t0332400-01
Chr06	irgsp1_rep	CDS	13168766	13168945	.	+	1	Parent=Os06t0332400-01
Chr06	irgsp1_rep	CDS	13169116	13169627	.	+	1	Parent=Os06t0332400-01
Chr06	irgsp1_rep	CDS	13170047	13170681	.	+	2	Parent=Os06t0332400-01
Chr06	irgsp1_rep	three_prime_UTR	13170682	13170755	.	+	.	Parent=Os06t0332400-01
Chr06	irgsp1_rep	mRNA	13162925	13171017	.	+	.	ID=Os06t0332400-02;Name=Os06t0332400-02;Locus_id=Os06g0332400;Note=VHS domain containing protein.;Transcript_evidence=AK101738 (DDBJ%2C Best hit);ORF_evidence=NP_001151446.1 (RefSeq);GO=Biological Process: intracellular protein transport (GO:0006886),Cellular Component: intracellular (GO:0005622);InterPro=VHS (IPR002014),GAT (IPR004152),ENTH/VHS (IPR008942),VHS subgroup (IPR018205);NIAS_FLcDNA=J033061J09;Expression=AK101738;TENOR=Os06t0332400-02;KEGG=Os06t0332400-02
Chr06	irgsp1_rep	five_prime_UTR	13162925	13163065	.	+	.	Parent=Os06t0332400-02
Chr06	irgsp1_rep	CDS	13163066	13163169	.	+	0	Parent=Os06t0332400-02
Chr06	irgsp1_rep	CDS	13164205	13164283	.	+	1	Parent=Os06t0332400-02
Chr06	irgsp1_rep	CDS	13165737	13165835	.	+	0	Parent=Os06t0332400-02
Chr06	irgsp1_rep	CDS	13165907	13166020	.	+	0	Parent=Os06t0332400-02
Chr06	irgsp1_rep	CDS	13166297	13166457	.	+	0	Parent=Os06t0332400-02
Chr06	irgsp1_rep	CDS	13166949	13167030	.	+	1	Parent=Os06t0332400-02
Chr06	irgsp1_rep	CDS	13167175	13167260	.	+	0	Parent=Os06t0332400-02
Chr06	irgsp1_rep	CDS	13168766	13168945	.	+	1	Parent=Os06t0332400-02
Chr06	irgsp1_rep	CDS	13169116	13169627	.	+	1	Parent=Os06t0332400-02
Chr06	irgsp1_rep	CDS	13170047	13170681	.	+	2	Parent=Os06t0332400-02
Chr06	irgsp1_rep	three_prime_UTR	13170682	13171017	.	+	.	Parent=Os06t0332400-02
Chr06	irgsp1_rep	mRNA	13163055	13169470	.	-	.	ID=Os06t0332450-00;Name=Os06t0332450-00;Locus_id=Os06g0332450;Note=Hypothetical protein.;Transcript_evidence=BT083949 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0332450-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	13169090	13169470	.	-	.	Parent=Os06t0332450-00
Chr06	irgsp1_rep	five_prime_UTR	13168758	13168952	.	-	.	Parent=Os06t0332450-00
Chr06	irgsp1_rep	five_prime_UTR	13166946	13167251	.	-	.	Parent=Os06t0332450-00
Chr06	irgsp1_rep	five_prime_UTR	13165919	13166017	.	-	.	Parent=Os06t0332450-00
Chr06	irgsp1_rep	CDS	13165905	13165918	.	-	0	Parent=Os06t0332450-00
Chr06	irgsp1_rep	CDS	13165750	13165833	.	-	1	Parent=Os06t0332450-00
Chr06	irgsp1_rep	CDS	13164201	13164295	.	-	1	Parent=Os06t0332450-00
Chr06	irgsp1_rep	CDS	13163055	13163166	.	-	2	Parent=Os06t0332450-00
Chr06	irgsp1_rep	mRNA	13172164	13175101	.	-	.	ID=Os06t0332500-01;Name=Os06t0332500-01;Locus_id=Os06g0332500;Note=Conserved hypothetical protein.;Transcript_evidence=AK121262 (DDBJ%2C Best hit);ORF_evidence=B8B1C1 (UniProt);NIAS_FLcDNA=J023104L05;Expression=AK121262;TENOR=Os06t0332500-01;KEGG=Os06t0332500-01
Chr06	irgsp1_rep	five_prime_UTR	13175068	13175101	.	-	.	Parent=Os06t0332500-01
Chr06	irgsp1_rep	CDS	13174934	13175067	.	-	0	Parent=Os06t0332500-01
Chr06	irgsp1_rep	CDS	13174730	13174848	.	-	1	Parent=Os06t0332500-01
Chr06	irgsp1_rep	CDS	13172592	13172611	.	-	2	Parent=Os06t0332500-01
Chr06	irgsp1_rep	three_prime_UTR	13172164	13172591	.	-	.	Parent=Os06t0332500-01
Chr06	irgsp1_rep	mRNA	13177570	13181678	.	+	.	ID=Os06t0332600-01;Name=Os06t0332600-01;Locus_id=Os06g0332600;Note=Similar to Rf2 protein.;Transcript_evidence=AK121615 (DDBJ%2C Best hit);ORF_evidence=F1SZ44 (UniProt);NIAS_FLcDNA=J033044B19;Expression=AK121615;TENOR=Os06t0332600-01;KEGG=Os06t0332600-01
Chr06	irgsp1_rep	five_prime_UTR	13177570	13177693	.	+	.	Parent=Os06t0332600-01
Chr06	irgsp1_rep	five_prime_UTR	13177957	13177978	.	+	.	Parent=Os06t0332600-01
Chr06	irgsp1_rep	CDS	13177979	13178048	.	+	0	Parent=Os06t0332600-01
Chr06	irgsp1_rep	CDS	13179862	13179962	.	+	2	Parent=Os06t0332600-01
Chr06	irgsp1_rep	CDS	13181110	13181191	.	+	0	Parent=Os06t0332600-01
Chr06	irgsp1_rep	CDS	13181295	13181524	.	+	2	Parent=Os06t0332600-01
Chr06	irgsp1_rep	three_prime_UTR	13181525	13181678	.	+	.	Parent=Os06t0332600-01
Chr06	irgsp1_rep	mRNA	13185273	13189310	.	-	.	ID=Os06t0332700-00;Name=Os06t0332700-00;Locus_id=Os06g0332700;Note=Hypothetical conserved gene.;Transcript_evidence=CT836256 (DDBJ%2C Best hit);ORF_evidence=NP_001057547.2 (RefSeq);InterPro=Tesmin/TSO1-like%2C CXC (IPR005172);TENOR=Os06t0332700-00;KEGG=Os06t0332700-00
Chr06	irgsp1_rep	five_prime_UTR	13188921	13189310	.	-	.	Parent=Os06t0332700-00
Chr06	irgsp1_rep	CDS	13188724	13188920	.	-	0	Parent=Os06t0332700-00
Chr06	irgsp1_rep	CDS	13187904	13187987	.	-	1	Parent=Os06t0332700-00
Chr06	irgsp1_rep	CDS	13187135	13187312	.	-	1	Parent=Os06t0332700-00
Chr06	irgsp1_rep	CDS	13185621	13185977	.	-	0	Parent=Os06t0332700-00
Chr06	irgsp1_rep	CDS	13185308	13185403	.	-	0	Parent=Os06t0332700-00
Chr06	irgsp1_rep	three_prime_UTR	13185273	13185307	.	-	.	Parent=Os06t0332700-00
Chr06	irgsp1_rep	mRNA	13196376	13198623	.	-	.	ID=Os06t0332800-01;Name=Os06t0332800-01;Locus_id=Os06g0332800;Note=Similar to Bundle sheath defective protein 2.;Transcript_evidence=AK060439 (DDBJ%2C Best hit);ORF_evidence=NP_001105880.1 (RefSeq);GO=Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C cysteine-rich domain (IPR001305);NIAS_FLcDNA=001-011-D08;Expression=AK060439;TENOR=Os06t0332800-01;KEGG=Os06t0332800-01
Chr06	irgsp1_rep	five_prime_UTR	13198560	13198623	.	-	.	Parent=Os06t0332800-01
Chr06	irgsp1_rep	CDS	13198425	13198559	.	-	0	Parent=Os06t0332800-01
Chr06	irgsp1_rep	CDS	13197673	13197748	.	-	0	Parent=Os06t0332800-01
Chr06	irgsp1_rep	CDS	13196877	13196973	.	-	2	Parent=Os06t0332800-01
Chr06	irgsp1_rep	CDS	13196682	13196769	.	-	1	Parent=Os06t0332800-01
Chr06	irgsp1_rep	three_prime_UTR	13196376	13196681	.	-	.	Parent=Os06t0332800-01
Chr06	irgsp1_rep	mRNA	13201039	13202281	.	-	.	ID=Os06t0332900-01;Name=Os06t0332900-01;Locus_id=Os06g0332900;Note=Similar to Zn-finger%2C RanBP-type%2C containing protein.;Transcript_evidence=AK059857 (DDBJ%2C Best hit);ORF_evidence=B6SKP3 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RanBP2-type (IPR001876);NIAS_FLcDNA=006-207-B02;TENOR=Os06t0332900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	13202263	13202281	.	-	.	Parent=Os06t0332900-01
Chr06	irgsp1_rep	CDS	13201955	13202262	.	-	0	Parent=Os06t0332900-01
Chr06	irgsp1_rep	CDS	13201171	13201849	.	-	1	Parent=Os06t0332900-01
Chr06	irgsp1_rep	three_prime_UTR	13201039	13201170	.	-	.	Parent=Os06t0332900-01
Chr06	irgsp1_rep	mRNA	13238784	13243390	.	+	.	ID=Os06t0333600-00;Name=Os06t0333600-00;Locus_id=Os06g0333600;Note=Hypothetical gene.;Transcript_evidence=CU405964 (DDBJ%2C Best hit);ORF_evidence=Q69WG8 (UniProt);TENOR=Os06t0333600-00;KEGG=Os06t0333600-00
Chr06	irgsp1_rep	five_prime_UTR	13238784	13239055	.	+	.	Parent=Os06t0333600-00
Chr06	irgsp1_rep	CDS	13239056	13239358	.	+	0	Parent=Os06t0333600-00
Chr06	irgsp1_rep	three_prime_UTR	13239359	13239440	.	+	.	Parent=Os06t0333600-00
Chr06	irgsp1_rep	three_prime_UTR	13242905	13243390	.	+	.	Parent=Os06t0333600-00
Chr06	irgsp1_rep	mRNA	13280827	13282938	.	+	.	ID=Os06t0334100-01;Name=Os06t0334100-01;Locus_id=Os06g0334100;Note=Hypothetical gene.;Transcript_evidence=AK058217 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-010-F03;Expression=AK058217;TENOR=Os06t0334100-01;KEGG=Os06t0334100-01
Chr06	irgsp1_rep	CDS	13280827	13281252	.	+	0	Parent=Os06t0334100-01
Chr06	irgsp1_rep	three_prime_UTR	13281253	13281279	.	+	.	Parent=Os06t0334100-01
Chr06	irgsp1_rep	three_prime_UTR	13281369	13281574	.	+	.	Parent=Os06t0334100-01
Chr06	irgsp1_rep	three_prime_UTR	13281907	13281978	.	+	.	Parent=Os06t0334100-01
Chr06	irgsp1_rep	three_prime_UTR	13282496	13282938	.	+	.	Parent=Os06t0334100-01
Chr06	irgsp1_rep	mRNA	13280963	13284499	.	+	.	ID=Os06t0334100-02;Name=Os06t0334100-02;Locus_id=Os06g0334100;Note=Conserved hypothetical protein.;Transcript_evidence=AK072856 (DDBJ%2C Best hit);ORF_evidence=Q7X7P6 (UniProt);NIAS_FLcDNA=J023135F23;TENOR=Os06t0334100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	13280963	13281421	.	+	.	Parent=Os06t0334100-02
Chr06	irgsp1_rep	CDS	13281422	13281571	.	+	0	Parent=Os06t0334100-02
Chr06	irgsp1_rep	three_prime_UTR	13281572	13281978	.	+	.	Parent=Os06t0334100-02
Chr06	irgsp1_rep	three_prime_UTR	13282496	13284499	.	+	.	Parent=Os06t0334100-02
Chr06	irgsp1_rep	mRNA	13297087	13301236	.	+	.	ID=Os06t0334300-01;Name=Os06t0334300-01;Locus_id=Os06g0334300;Oryzabase Gene Symbol Synonym(s)=OsCrRLK1L14;Oryzabase Gene Name Synonym(s)=Catharanthus roseus receptor-like kinase1-like kinase 14;Note=Similar to Resistance protein candidate (Fragment).;Transcript_evidence=AK065468 (DDBJ%2C Best hit);ORF_evidence=C6ZRT9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635),Malectin-like carbohydrate-binding domain (IPR024788);NIAS_FLcDNA=J013020G14;Oryzabase=18682;Expression=AK065468;TENOR=Os06t0334300-01;KEGG=Os06t0334300-01
Chr06	irgsp1_rep	five_prime_UTR	13297087	13297364	.	+	.	Parent=Os06t0334300-01
Chr06	irgsp1_rep	CDS	13297365	13297406	.	+	0	Parent=Os06t0334300-01
Chr06	irgsp1_rep	CDS	13298407	13300944	.	+	0	Parent=Os06t0334300-01
Chr06	irgsp1_rep	three_prime_UTR	13300945	13301236	.	+	.	Parent=Os06t0334300-01
Chr06	irgsp1_rep	mRNA	13300203	13301239	.	+	.	ID=Os06t0334300-02;Name=Os06t0334300-02;Locus_id=Os06g0334300;Oryzabase Gene Symbol Synonym(s)=OsCrRLK1L14;Oryzabase Gene Name Synonym(s)=Catharanthus roseus receptor-like kinase1-like kinase 14;Note=Similar to predicted protein.;Transcript_evidence=AK061669 (DDBJ%2C Best hit);ORF_evidence=C6ZRT9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-036-F10;Oryzabase=18682;Expression=AK061669;TENOR=Os06t0334300-02;KEGG=Os06t0334300-02
Chr06	irgsp1_rep	five_prime_UTR	13300203	13300203	.	+	.	Parent=Os06t0334300-02
Chr06	irgsp1_rep	CDS	13300204	13300944	.	+	0	Parent=Os06t0334300-02
Chr06	irgsp1_rep	three_prime_UTR	13300945	13301239	.	+	.	Parent=Os06t0334300-02
Chr06	irgsp1_rep	mRNA	13302562	13306574	.	-	.	ID=Os06t0334400-01;Name=Os06t0334400-01;Locus_id=Os06g0334400;CGSNL Gene Symbol=CDKF%3B1;CGSNL Gene Name=CYCLIN-DEPENDENT KINASE F%3B1;Oryzabase Gene Symbol Synonym(s)=CDKF%3B1%2C Orysa%3BCDKF%3B1%2C CDKF1%2C CDKF-1/CAK1AT%2C CDKF-1%2C CAK1AT%2C CAK1A;Note=Similar to Cdk-activating kinase 1At (Cdk-activating kinase CAK1At).;Transcript_evidence=AK120969 (DDBJ%2C Best hit);ORF_evidence=Q5Z754 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023040M24;Oryzabase=13295;TENOR=Os06t0334400-01
Chr06	irgsp1_rep	five_prime_UTR	13306501	13306574	.	-	.	Parent=Os06t0334400-01
Chr06	irgsp1_rep	CDS	13306000	13306500	.	-	0	Parent=Os06t0334400-01
Chr06	irgsp1_rep	CDS	13302747	13303685	.	-	0	Parent=Os06t0334400-01
Chr06	irgsp1_rep	three_prime_UTR	13302562	13302746	.	-	.	Parent=Os06t0334400-01
Chr06	irgsp1_rep	mRNA	13302562	13306223	.	-	.	ID=Os06t0334400-02;Name=Os06t0334400-02;Locus_id=Os06g0334400;CGSNL Gene Symbol=CDKF%3B1;CGSNL Gene Name=CYCLIN-DEPENDENT KINASE F%3B1;Oryzabase Gene Symbol Synonym(s)=CDKF%3B1%2C Orysa%3BCDKF%3B1%2C CDKF1%2C CDKF-1/CAK1AT%2C CDKF-1%2C CAK1AT%2C CAK1A;Note=Similar to Cyclin-dependent kinase F-1.;Transcript_evidence=AK059487 (DDBJ%2C Best hit);ORF_evidence=Q5Z754 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-028-G02;Oryzabase=13295;TENOR=Os06t0334400-02
Chr06	irgsp1_rep	five_prime_UTR	13306222	13306223	.	-	.	Parent=Os06t0334400-02
Chr06	irgsp1_rep	CDS	13306000	13306221	.	-	0	Parent=Os06t0334400-02
Chr06	irgsp1_rep	CDS	13302747	13303685	.	-	0	Parent=Os06t0334400-02
Chr06	irgsp1_rep	three_prime_UTR	13302562	13302746	.	-	.	Parent=Os06t0334400-02
Chr06	irgsp1_rep	mRNA	13314452	13318244	.	-	.	ID=Os06t0334600-01;Name=Os06t0334600-01;Locus_id=Os06g0334600;Note=Hypothetical protein.;Transcript_evidence=AK064993 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013001D16;Expression=AK064993;TENOR=Os06t0334600-01;KEGG=Os06t0334600-01
Chr06	irgsp1_rep	five_prime_UTR	13318125	13318244	.	-	.	Parent=Os06t0334600-01
Chr06	irgsp1_rep	CDS	13317810	13318124	.	-	0	Parent=Os06t0334600-01
Chr06	irgsp1_rep	three_prime_UTR	13317052	13317809	.	-	.	Parent=Os06t0334600-01
Chr06	irgsp1_rep	three_prime_UTR	13316171	13316227	.	-	.	Parent=Os06t0334600-01
Chr06	irgsp1_rep	three_prime_UTR	13314452	13315808	.	-	.	Parent=Os06t0334600-01
Chr06	irgsp1_rep	mRNA	13327567	13329058	.	+	.	ID=Os06t0335101-01;Name=Os06t0335101-01;Locus_id=Os06g0335101;Note=Micro-fibrillar-associated 1%2C C-terminal domain containing protein.;Transcript_evidence=AK241386 (DDBJ%2C Best hit);ORF_evidence=NP_001046553.1 (RefSeq);InterPro=Micro-fibrillar-associated 1%2C C-terminal (IPR009730);NIAS_FLcDNA=J065156D24;TENOR=Os06t0335101-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	13327567	13328061	.	+	.	Parent=Os06t0335101-01
Chr06	irgsp1_rep	CDS	13328062	13328406	.	+	0	Parent=Os06t0335101-01
Chr06	irgsp1_rep	three_prime_UTR	13328407	13329058	.	+	.	Parent=Os06t0335101-01
Chr06	irgsp1_rep	mRNA	13345347	13349055	.	+	.	ID=Os06t0335500-01;Name=Os06t0335500-01;Locus_id=Os06g0335500;CGSNL Gene Symbol=IAA21;Oryzabase Gene Symbol Synonym(s)=OsIAA21;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 21;Note=AUX/IAA protein family protein.;Transcript_evidence=AK121989 (DDBJ%2C Best hit);ORF_evidence=Q5Z749 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Aux/IAA-ARF-dimerisation (IPR011525);NIAS_FLcDNA=J033109C03;Oryzabase=10909;Expression=AK121989;TENOR=Os06t0335500-01;KEGG=Os06t0335500-01
Chr06	irgsp1_rep	five_prime_UTR	13345347	13345506	.	+	.	Parent=Os06t0335500-01
Chr06	irgsp1_rep	CDS	13345507	13345823	.	+	0	Parent=Os06t0335500-01
Chr06	irgsp1_rep	CDS	13346607	13346848	.	+	1	Parent=Os06t0335500-01
Chr06	irgsp1_rep	CDS	13347537	13347678	.	+	2	Parent=Os06t0335500-01
Chr06	irgsp1_rep	CDS	13348287	13348348	.	+	1	Parent=Os06t0335500-01
Chr06	irgsp1_rep	CDS	13348706	13348743	.	+	2	Parent=Os06t0335500-01
Chr06	irgsp1_rep	three_prime_UTR	13348744	13349055	.	+	.	Parent=Os06t0335500-01
Chr06	irgsp1_rep	mRNA	13347539	13349055	.	+	.	ID=Os06t0335500-02;Name=Os06t0335500-02;Locus_id=Os06g0335500;CGSNL Gene Symbol=IAA21;Oryzabase Gene Symbol Synonym(s)=OsIAA21;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 21;Note=Similar to Auxin-responsive protein IAA21.;Transcript_evidence=AK063854 (DDBJ%2C Best hit);ORF_evidence=Q5Z749 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Aux/IAA-ARF-dimerisation (IPR011525);NIAS_FLcDNA=001-122-D03;Oryzabase=10909;Expression=AK063854;TENOR=Os06t0335500-02;KEGG=Os06t0335500-02
Chr06	irgsp1_rep	CDS	13347539	13347678	.	+	0	Parent=Os06t0335500-02
Chr06	irgsp1_rep	CDS	13348287	13348348	.	+	1	Parent=Os06t0335500-02
Chr06	irgsp1_rep	CDS	13348706	13348743	.	+	2	Parent=Os06t0335500-02
Chr06	irgsp1_rep	three_prime_UTR	13348744	13349055	.	+	.	Parent=Os06t0335500-02
Chr06	irgsp1_rep	mRNA	13389882	13390271	.	+	.	ID=Os06t0335900-02;Name=Os06t0335900-02;Locus_id=Os06g0335900;CGSNL Gene Symbol=XTH15;CGSNL Gene Name=XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 15;Oryzabase Gene Symbol Synonym(s)=OsXTH15;Oryzabase Gene Name Synonym(s)=xyloglucan endotransglucosylase/hydrolase%2C xyloglucan endotransglucosylase 15;Note=Concanavalin A-like lectin/glucanase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001057555.1 (RefSeq);GO=Biological Process: cellular glucan metabolic process (GO:0006073),Cellular Component: cell wall (GO:0005618),Cellular Component: apoplast (GO:0048046),Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762);InterPro=Concanavalin A-like lectin/glucanase (IPR008985),Xyloglucan endo-transglycosylase%2C C-terminal (IPR010713),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320);Oryzabase=6495;TENOR=Os06t0335900-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	13389882	13390271	.	+	0	Parent=Os06t0335900-02
Chr06	irgsp1_rep	mRNA	13383816	13385580	.	+	.	ID=Os06t0335950-00;Name=Os06t0335950-00;Locus_id=Os06g0335950;Note=Non-protein coding transcript.;Transcript_evidence=CT836255 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os06t0335950-00
Chr06	irgsp1_rep	exon	13383816	13384649	.	+	.	Parent=Os06t0335950-00
Chr06	irgsp1_rep	exon	13384680	13384804	.	+	.	Parent=Os06t0335950-00
Chr06	irgsp1_rep	exon	13384811	13385580	.	+	.	Parent=Os06t0335950-00
Chr06	irgsp1_rep	mRNA	13386533	13387490	.	+	.	ID=Os06t0335975-00;Name=Os06t0335975-00;Locus_id=Os06g0335975;Note=Similar to Xet3 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q949H9 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 16 (IPR000757),Concanavalin A-like lectin/glucanase (IPR008985),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320);TENOR=Os06t0335975-00
Chr06	irgsp1_rep	CDS	13386533	13386704	.	+	0	Parent=Os06t0335975-00
Chr06	irgsp1_rep	CDS	13387378	13387490	.	+	2	Parent=Os06t0335975-00
Chr06	irgsp1_rep	mRNA	13387969	13388699	.	+	.	ID=Os06t0336001-01;Name=Os06t0336001-01;Locus_id=Os06g0336001;Note=Non-protein coding transcript.;Transcript_evidence=AK289086 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090095J20;TENOR=Os06t0336001-01
Chr06	irgsp1_rep	exon	13387969	13388699	.	+	.	Parent=Os06t0336001-01
Chr06	irgsp1_rep	mRNA	13399295	13399653	.	-	.	ID=Os06t0336150-01;Name=Os06t0336150-01;Locus_id=Os06g0336150;Note=Hypothetical conserved gene.;Transcript_evidence=AK241165 (DDBJ%2C Best hit);ORF_evidence=Q5Z6F1 (UniProt);NIAS_FLcDNA=J065116E15;TENOR=Os06t0336150-01;KEGG=Os06t0336150-01
Chr06	irgsp1_rep	CDS	13399396	13399653	.	-	0	Parent=Os06t0336150-01
Chr06	irgsp1_rep	three_prime_UTR	13399295	13399395	.	-	.	Parent=Os06t0336150-01
Chr06	irgsp1_rep	mRNA	13407319	13408715	.	+	.	ID=Os06t0336200-01;Name=Os06t0336200-01;Locus_id=Os06g0336200;CGSNL Gene Symbol=TIP2%3B2;CGSNL Gene Name=TONOPLAST INTRINSIC PROTEIN 2%3B2;Oryzabase Gene Symbol Synonym(s)=OsTIP2%3B2%2C TIP2-2;Oryzabase Gene Name Synonym(s)=tonoplast intrinsic protein 2%3B2%2C Probable aquaporin TIP2-2%2C Tonoplast intrinsic protein 2-2;Note=Delta-tonoplast intrinsic protein.;Transcript_evidence=AK104270 (DDBJ%2C Best hit),AK073531 (DDBJ%2C Best hit),AK099015 (DDBJ%2C Best hit),AK099141 (DDBJ%2C Best hit),AK099616 (DDBJ%2C Best hit),AK104377 (DDBJ%2C Best hit),AK104464 (DDBJ%2C Best hit);ORF_evidence=D2KZ41 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: water transport (GO:0006833),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Aquaporin (IPR012269),Major intrinsic protein%2C conserved site (IPR022357),Aquaporin-like (IPR023271);NIAS_FLcDNA=006-311-F03,J033044F19,J013116H02,J023055A02,J013050J20,001-035-G09,006-301-C06;Oryzabase=7315;TENOR=Os06t0336200-01
Chr06	irgsp1_rep	five_prime_UTR	13407319	13407409	.	+	.	Parent=Os06t0336200-01
Chr06	irgsp1_rep	CDS	13407410	13407539	.	+	0	Parent=Os06t0336200-01
Chr06	irgsp1_rep	CDS	13407621	13407868	.	+	2	Parent=Os06t0336200-01
Chr06	irgsp1_rep	CDS	13407971	13408339	.	+	0	Parent=Os06t0336200-01
Chr06	irgsp1_rep	three_prime_UTR	13408340	13408715	.	+	.	Parent=Os06t0336200-01
Chr06	irgsp1_rep	mRNA	13407322	13408697	.	+	.	ID=Os06t0336200-02;Name=Os06t0336200-02;Locus_id=Os06g0336200;CGSNL Gene Symbol=TIP2%3B2;CGSNL Gene Name=TONOPLAST INTRINSIC PROTEIN 2%3B2;Oryzabase Gene Symbol Synonym(s)=OsTIP2%3B2%2C TIP2-2;Oryzabase Gene Name Synonym(s)=tonoplast intrinsic protein 2%3B2%2C Probable aquaporin TIP2-2%2C Tonoplast intrinsic protein 2-2;Note=Similar to cDNA clone:001-035-G09%2C full insert sequence.;Transcript_evidence=AK100193 (DDBJ%2C Best hit);ORF_evidence=B7EMA5 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Aquaporin-like (IPR023271);NIAS_FLcDNA=J023036J06;Oryzabase=7315;TENOR=Os06t0336200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	13407322	13407409	.	+	.	Parent=Os06t0336200-02
Chr06	irgsp1_rep	CDS	13407410	13407539	.	+	0	Parent=Os06t0336200-02
Chr06	irgsp1_rep	CDS	13407621	13407650	.	+	2	Parent=Os06t0336200-02
Chr06	irgsp1_rep	CDS	13407772	13407868	.	+	2	Parent=Os06t0336200-02
Chr06	irgsp1_rep	CDS	13407971	13408022	.	+	1	Parent=Os06t0336200-02
Chr06	irgsp1_rep	three_prime_UTR	13408023	13408697	.	+	.	Parent=Os06t0336200-02
Chr06	irgsp1_rep	mRNA	13412111	13412717	.	-	.	ID=Os06t0336350-00;Name=Os06t0336350-00;Locus_id=Os06g0336350;Note=Conserved hypothetical protein.;Transcript_evidence=BT065465 (DDBJ);ORF_evidence=Q5Z6E7 (UniProt);TENOR=Os06t0336350-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	13412717	13412717	.	-	.	Parent=Os06t0336350-00
Chr06	irgsp1_rep	CDS	13412111	13412716	.	-	0	Parent=Os06t0336350-00
Chr06	irgsp1_rep	mRNA	13414641	13418272	.	+	.	ID=Os06t0336500-01;Name=Os06t0336500-01;Locus_id=Os06g0336500;CGSNL Gene Symbol=CSLD5;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE D5;Oryzabase Gene Symbol Synonym(s)=OsCSLD5;Note=Similar to CSLD2 (Fragment).;Transcript_evidence=AK072260 (DDBJ%2C Best hit);ORF_evidence=Q5Z6E5 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150);NIAS_FLcDNA=J023005B09;Oryzabase=9015;Expression=AK072260;TENOR=Os06t0336500-01;KEGG=Os06t0336500-01
Chr06	irgsp1_rep	five_prime_UTR	13414641	13414857	.	+	.	Parent=Os06t0336500-01
Chr06	irgsp1_rep	CDS	13414858	13417896	.	+	0	Parent=Os06t0336500-01
Chr06	irgsp1_rep	three_prime_UTR	13417897	13418272	.	+	.	Parent=Os06t0336500-01
Chr06	irgsp1_rep	mRNA	13439148	13440354	.	+	.	ID=Os06t0337100-01;Name=Os06t0337100-01;Locus_id=Os06g0337100;Note=Non-protein coding transcript.;Transcript_evidence=AK061222 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=006-210-F04;TENOR=Os06t0337100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	exon	13439148	13439808	.	+	.	Parent=Os06t0337100-01
Chr06	irgsp1_rep	exon	13440052	13440354	.	+	.	Parent=Os06t0337100-01
Chr06	irgsp1_rep	mRNA	13439111	13439757	.	-	.	ID=Os06t0337200-00;Name=Os06t0337200-00;Locus_id=Os06g0337200;Note=Similar to ZF-HD homeobox protein.;Transcript_evidence=EU963277 (DDBJ);ORF_evidence=NP_001150690.1 (RefSeq);InterPro=ZF-HD homeobox protein%2C Cys/His-rich dimerisation domain (IPR006456);TENOR=Os06t0337200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	13439251	13439757	.	-	0	Parent=Os06t0337200-00
Chr06	irgsp1_rep	three_prime_UTR	13439111	13439250	.	-	.	Parent=Os06t0337200-00
Chr06	irgsp1_rep	mRNA	13476487	13485051	.	+	.	ID=Os06t0338200-01;Name=Os06t0338200-01;Locus_id=Os06g0338200;CGSNL Gene Symbol=DAO1;CGSNL Gene Name=DIAMINE OXIDASE 1;Oryzabase Gene Symbol Synonym(s)=OsDAO1%2C OsCuDAO1%2C CuDAO1;Oryzabase Gene Name Synonym(s)=diamine oxidase 1%2C Copper-containing diamine oxidase 1;Note=Copper amine oxidase family protein.;Transcript_evidence=AK067262 (DDBJ%2C Best hit);ORF_evidence=B8B1E0 (UniProt);GO=Biological Process: amine metabolic process (GO:0009308),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: copper ion binding (GO:0005507),Molecular Function: primary amine oxidase activity (GO:0008131),Molecular Function: quinone binding (GO:0048038);InterPro=Copper amine oxidase (IPR000269),Copper amine oxidase%2C C-terminal (IPR015798),Copper amine oxidase%2C N2-terminal (IPR015800),Copper amine oxidase%2C N2/N3-terminal (IPR015801),Copper amine oxidase%2C N3-terminal (IPR015802),Copper amine oxidase%2C N-terminal (IPR016182);NIAS_FLcDNA=J013095P11;Oryzabase=21671;Expression=AK067262;TENOR=Os06t0338200-01;KEGG=Os06t0338200-01
Chr06	irgsp1_rep	five_prime_UTR	13476487	13476592	.	+	.	Parent=Os06t0338200-01
Chr06	irgsp1_rep	CDS	13476593	13477416	.	+	0	Parent=Os06t0338200-01
Chr06	irgsp1_rep	CDS	13483232	13483619	.	+	1	Parent=Os06t0338200-01
Chr06	irgsp1_rep	CDS	13483708	13483821	.	+	0	Parent=Os06t0338200-01
Chr06	irgsp1_rep	CDS	13484072	13484631	.	+	0	Parent=Os06t0338200-01
Chr06	irgsp1_rep	CDS	13484716	13484926	.	+	1	Parent=Os06t0338200-01
Chr06	irgsp1_rep	three_prime_UTR	13484927	13485051	.	+	.	Parent=Os06t0338200-01
Chr06	irgsp1_rep	mRNA	13499044	13501580	.	+	.	ID=Os06t0338700-00;Name=Os06t0338700-00;Locus_id=Os06g0338700;Note=Similar to Primary amine oxidase.;Transcript_evidence=ab initio prediction;ORF_evidence=A2YCJ4 (UniProt);GO=Biological Process: amine metabolic process (GO:0009308),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: copper ion binding (GO:0005507),Molecular Function: primary amine oxidase activity (GO:0008131),Molecular Function: quinone binding (GO:0048038);InterPro=Copper amine oxidase (IPR000269),Copper amine oxidase%2C C-terminal (IPR015798),Copper amine oxidase%2C N2/N3-terminal (IPR015801),Copper amine oxidase%2C N3-terminal (IPR015802),Copper amine oxidase%2C N-terminal (IPR016182);TENOR=Os06t0338700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	13499044	13499462	.	+	0	Parent=Os06t0338700-00
Chr06	irgsp1_rep	CDS	13500042	13500426	.	+	1	Parent=Os06t0338700-00
Chr06	irgsp1_rep	CDS	13500496	13500630	.	+	0	Parent=Os06t0338700-00
Chr06	irgsp1_rep	CDS	13500720	13501210	.	+	0	Parent=Os06t0338700-00
Chr06	irgsp1_rep	CDS	13501370	13501580	.	+	1	Parent=Os06t0338700-00
Chr06	irgsp1_rep	mRNA	13498752	13500399	.	-	.	ID=Os06t0338801-00;Name=Os06t0338801-00;Locus_id=Os06g0338801;Note=Hypothetical protein.;Transcript_evidence=BT063833 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0338801-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	13500130	13500399	.	-	0	Parent=Os06t0338801-00
Chr06	irgsp1_rep	three_prime_UTR	13500006	13500129	.	-	.	Parent=Os06t0338801-00
Chr06	irgsp1_rep	three_prime_UTR	13498752	13499435	.	-	.	Parent=Os06t0338801-00
Chr06	irgsp1_rep	mRNA	13514718	13521719	.	-	.	ID=Os06t0338900-01;Name=Os06t0338900-01;Locus_id=Os06g0338900;Note=Bacterial transferase hexapeptide repeat domain containing protein.;Transcript_evidence=AK100837 (DDBJ%2C Best hit);ORF_evidence=B6TJ84 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=Bacterial transferase hexapeptide repeat (IPR001451),Nucleotidyl transferase (IPR005835);NIAS_FLcDNA=J023123E15;Expression=AK100837;TENOR=Os06t0338900-01;KEGG=Os06t0338900-01
Chr06	irgsp1_rep	five_prime_UTR	13521639	13521719	.	-	.	Parent=Os06t0338900-01
Chr06	irgsp1_rep	CDS	13521573	13521638	.	-	0	Parent=Os06t0338900-01
Chr06	irgsp1_rep	CDS	13521406	13521501	.	-	0	Parent=Os06t0338900-01
Chr06	irgsp1_rep	CDS	13521237	13521314	.	-	0	Parent=Os06t0338900-01
Chr06	irgsp1_rep	CDS	13518814	13518894	.	-	0	Parent=Os06t0338900-01
Chr06	irgsp1_rep	CDS	13518500	13518719	.	-	0	Parent=Os06t0338900-01
Chr06	irgsp1_rep	CDS	13518350	13518408	.	-	2	Parent=Os06t0338900-01
Chr06	irgsp1_rep	CDS	13517182	13517231	.	-	0	Parent=Os06t0338900-01
Chr06	irgsp1_rep	CDS	13517004	13517091	.	-	1	Parent=Os06t0338900-01
Chr06	irgsp1_rep	CDS	13516682	13516918	.	-	0	Parent=Os06t0338900-01
Chr06	irgsp1_rep	CDS	13516504	13516596	.	-	0	Parent=Os06t0338900-01
Chr06	irgsp1_rep	CDS	13515740	13515844	.	-	0	Parent=Os06t0338900-01
Chr06	irgsp1_rep	CDS	13515389	13515505	.	-	0	Parent=Os06t0338900-01
Chr06	irgsp1_rep	CDS	13515080	13515157	.	-	0	Parent=Os06t0338900-01
Chr06	irgsp1_rep	three_prime_UTR	13514718	13515079	.	-	.	Parent=Os06t0338900-01
Chr06	irgsp1_rep	mRNA	13544626	13545173	.	+	.	ID=Os06t0339500-01;Name=Os06t0339500-01;Locus_id=Os06g0339500;Note=Similar to OSIGBa0137A06.2 protein.;Transcript_evidence=AK105220 (DDBJ%2C Best hit);ORF_evidence=Q01N23 (UniProt);NIAS_FLcDNA=001-110-E08;Expression=AK105220;TENOR=Os06t0339500-01;KEGG=Os06t0339500-01
Chr06	irgsp1_rep	five_prime_UTR	13544626	13544627	.	+	.	Parent=Os06t0339500-01
Chr06	irgsp1_rep	CDS	13544628	13544834	.	+	0	Parent=Os06t0339500-01
Chr06	irgsp1_rep	three_prime_UTR	13544835	13545173	.	+	.	Parent=Os06t0339500-01
Chr06	irgsp1_rep	mRNA	13554616	13555059	.	+	.	ID=Os06t0339800-00;Name=Os06t0339800-00;Locus_id=Os06g0339800;Note=Ribosomal protein L30%2C bacterial family protein.;Transcript_evidence=AK372878 (DDBJ);ORF_evidence=NP_001146949.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Cellular Component: large ribosomal subunit (GO:0015934),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L30%2C bacterial-type (IPR005996),Ribosomal protein L30%2C ferredoxin-like fold domain (IPR016082);TENOR=Os06t0339800-00;KEGG=Os06t0339800-00
Chr06	irgsp1_rep	five_prime_UTR	13554616	13554714	.	+	.	Parent=Os06t0339800-00
Chr06	irgsp1_rep	CDS	13554715	13555059	.	+	0	Parent=Os06t0339800-00
Chr06	irgsp1_rep	mRNA	13557094	13557342	.	-	.	ID=Os06t0340001-00;Name=Os06t0340001-00;Locus_id=Os06g0340001;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001174769.1 (RefSeq);TENOR=Os06t0340001-00;KEGG=Os06t0340001-00
Chr06	irgsp1_rep	CDS	13557094	13557342	.	-	0	Parent=Os06t0340001-00
Chr06	irgsp1_rep	mRNA	13589241	13591992	.	-	.	ID=Os06t0340200-01;Name=Os06t0340200-01;Locus_id=Os06g0340200;Note=Zinc finger%2C RING-CH-type domain containing protein.;Transcript_evidence=AK069001 (DDBJ%2C Best hit);ORF_evidence=B8B1E4 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-CH-type (IPR011016),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J023003L01;Expression=AK069001;TENOR=Os06t0340200-01;KEGG=Os06t0340200-01
Chr06	irgsp1_rep	five_prime_UTR	13591954	13591992	.	-	.	Parent=Os06t0340200-01
Chr06	irgsp1_rep	CDS	13591933	13591953	.	-	0	Parent=Os06t0340200-01
Chr06	irgsp1_rep	CDS	13591395	13591796	.	-	0	Parent=Os06t0340200-01
Chr06	irgsp1_rep	CDS	13590517	13591309	.	-	0	Parent=Os06t0340200-01
Chr06	irgsp1_rep	CDS	13590297	13590376	.	-	2	Parent=Os06t0340200-01
Chr06	irgsp1_rep	CDS	13589521	13589718	.	-	0	Parent=Os06t0340200-01
Chr06	irgsp1_rep	three_prime_UTR	13589241	13589520	.	-	.	Parent=Os06t0340200-01
Chr06	irgsp1_rep	mRNA	13584735	13591960	.	-	.	ID=Os06t0340200-02;Name=Os06t0340200-02;Locus_id=Os06g0340200;Note=Zinc finger%2C RING-CH-type domain containing protein.;Transcript_evidence=AK121342 (DDBJ%2C Best hit);ORF_evidence=B8B1E4 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-CH-type (IPR011016),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J023121A11;Expression=AK121342;TENOR=Os06t0340200-02;KEGG=Os06t0340200-02
Chr06	irgsp1_rep	five_prime_UTR	13591954	13591960	.	-	.	Parent=Os06t0340200-02
Chr06	irgsp1_rep	CDS	13591933	13591953	.	-	0	Parent=Os06t0340200-02
Chr06	irgsp1_rep	CDS	13591395	13591796	.	-	0	Parent=Os06t0340200-02
Chr06	irgsp1_rep	CDS	13590517	13591309	.	-	0	Parent=Os06t0340200-02
Chr06	irgsp1_rep	CDS	13590297	13590376	.	-	2	Parent=Os06t0340200-02
Chr06	irgsp1_rep	CDS	13589521	13589718	.	-	0	Parent=Os06t0340200-02
Chr06	irgsp1_rep	three_prime_UTR	13586915	13589520	.	-	.	Parent=Os06t0340200-02
Chr06	irgsp1_rep	three_prime_UTR	13584735	13586758	.	-	.	Parent=Os06t0340200-02
Chr06	irgsp1_rep	mRNA	13588258	13589874	.	-	.	ID=Os06t0340200-03;Name=Os06t0340200-03;Locus_id=Os06g0340200;Note=Hypothetical conserved gene.;Transcript_evidence=AK107260 (DDBJ%2C Best hit);ORF_evidence=B8B1E4 (UniProt);NIAS_FLcDNA=002-125-G12;Expression=AK107260;TENOR=Os06t0340200-03;KEGG=Os06t0340200-03
Chr06	irgsp1_rep	five_prime_UTR	13589770	13589874	.	-	.	Parent=Os06t0340200-03
Chr06	irgsp1_rep	CDS	13589521	13589769	.	-	0	Parent=Os06t0340200-03
Chr06	irgsp1_rep	three_prime_UTR	13588258	13589520	.	-	.	Parent=Os06t0340200-03
Chr06	irgsp1_rep	mRNA	13585070	13586160	.	+	.	ID=Os06t0340301-01;Name=Os06t0340301-01;Locus_id=Os06g0340301;Note=Conserved hypothetical protein.;Transcript_evidence=AK242343 (DDBJ%2C Best hit);ORF_evidence=NP_001176501.1 (RefSeq);NIAS_FLcDNA=J080006O03;TENOR=Os06t0340301-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	13585070	13585553	.	+	.	Parent=Os06t0340301-01
Chr06	irgsp1_rep	CDS	13585554	13585661	.	+	0	Parent=Os06t0340301-01
Chr06	irgsp1_rep	three_prime_UTR	13585662	13586160	.	+	.	Parent=Os06t0340301-01
Chr06	irgsp1_rep	mRNA	13602068	13604917	.	-	.	ID=Os06t0340600-01;Name=Os06t0340600-01;Locus_id=Os06g0340600;Note=Similar to phosphatidylinositol 3- and 4-kinase family protein.;Transcript_evidence=AK065176 (DDBJ%2C Best hit);ORF_evidence=NP_001147061.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Phosphatidylinositol 3-/4-kinase%2C catalytic (IPR000403),Ubiquitin (IPR000626),Protein kinase-like domain (IPR011009),Ubiquitin supergroup (IPR019955);NIAS_FLcDNA=J013002D10;Expression=AK065176;TENOR=Os06t0340600-01;KEGG=Os06t0340600-01
Chr06	irgsp1_rep	five_prime_UTR	13604783	13604917	.	-	.	Parent=Os06t0340600-01
Chr06	irgsp1_rep	five_prime_UTR	13604518	13604612	.	-	.	Parent=Os06t0340600-01
Chr06	irgsp1_rep	five_prime_UTR	13604329	13604407	.	-	.	Parent=Os06t0340600-01
Chr06	irgsp1_rep	five_prime_UTR	13604027	13604240	.	-	.	Parent=Os06t0340600-01
Chr06	irgsp1_rep	CDS	13602698	13604026	.	-	0	Parent=Os06t0340600-01
Chr06	irgsp1_rep	CDS	13602226	13602603	.	-	0	Parent=Os06t0340600-01
Chr06	irgsp1_rep	three_prime_UTR	13602068	13602225	.	-	.	Parent=Os06t0340600-01
Chr06	irgsp1_rep	mRNA	13601989	13604917	.	-	.	ID=Os06t0340600-02;Name=Os06t0340600-02;Locus_id=Os06g0340600;Note=Similar to phosphatidylinositol 3- and 4-kinase family protein.;Transcript_evidence=AK100224 (DDBJ%2C Best hit);ORF_evidence=NP_001147061.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Phosphatidylinositol 3-/4-kinase%2C catalytic (IPR000403),Ubiquitin (IPR000626),Protein kinase-like domain (IPR011009),Ubiquitin supergroup (IPR019955);NIAS_FLcDNA=J023047L02;Expression=AK100224;TENOR=Os06t0340600-02;KEGG=Os06t0340600-02
Chr06	irgsp1_rep	five_prime_UTR	13604761	13604917	.	-	.	Parent=Os06t0340600-02
Chr06	irgsp1_rep	five_prime_UTR	13604518	13604612	.	-	.	Parent=Os06t0340600-02
Chr06	irgsp1_rep	five_prime_UTR	13604329	13604407	.	-	.	Parent=Os06t0340600-02
Chr06	irgsp1_rep	five_prime_UTR	13604027	13604240	.	-	.	Parent=Os06t0340600-02
Chr06	irgsp1_rep	CDS	13602698	13604026	.	-	0	Parent=Os06t0340600-02
Chr06	irgsp1_rep	CDS	13602226	13602603	.	-	0	Parent=Os06t0340600-02
Chr06	irgsp1_rep	three_prime_UTR	13601989	13602225	.	-	.	Parent=Os06t0340600-02
Chr06	irgsp1_rep	mRNA	13602119	13604886	.	-	.	ID=Os06t0340600-03;Name=Os06t0340600-03;Locus_id=Os06g0340600;Note=Phosphatidylinositol 3- and 4-kinase%2C catalytic domain containing protein.;Transcript_evidence=AK061872 (DDBJ%2C Best hit);ORF_evidence=A6N0X2 (UniProt);GO=Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Phosphatidylinositol 3-/4-kinase%2C catalytic (IPR000403),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=001-041-A05;Expression=AK061872;TENOR=Os06t0340600-03;KEGG=Os06t0340600-03
Chr06	irgsp1_rep	five_prime_UTR	13604761	13604886	.	-	.	Parent=Os06t0340600-03
Chr06	irgsp1_rep	five_prime_UTR	13604518	13604612	.	-	.	Parent=Os06t0340600-03
Chr06	irgsp1_rep	five_prime_UTR	13604329	13604407	.	-	.	Parent=Os06t0340600-03
Chr06	irgsp1_rep	five_prime_UTR	13604088	13604240	.	-	.	Parent=Os06t0340600-03
Chr06	irgsp1_rep	CDS	13604069	13604087	.	-	0	Parent=Os06t0340600-03
Chr06	irgsp1_rep	CDS	13602698	13602819	.	-	2	Parent=Os06t0340600-03
Chr06	irgsp1_rep	CDS	13602226	13602603	.	-	0	Parent=Os06t0340600-03
Chr06	irgsp1_rep	three_prime_UTR	13602119	13602225	.	-	.	Parent=Os06t0340600-03
Chr06	irgsp1_rep	mRNA	13630101	13631408	.	+	.	ID=Os06t0341300-01;Name=Os06t0341300-01;Locus_id=Os06g0341300;CGSNL Gene Symbol=LEA33;CGSNL Gene Name=LATE EMBRYOGENESIS ABUNDANT PROTEIN 33;Oryzabase Gene Symbol Synonym(s)=OsLEA33%2C D34%2C OsEnS-85;Oryzabase Gene Name Synonym(s)=late embryogenesis abundant protein 33%2C endosperm-specific gene 85;Note=Seed maturation protein domain containing protein.;Transcript_evidence=AK107654 (DDBJ%2C Best hit);ORF_evidence=A2YCK6 (UniProt);InterPro=Seed maturation protein (IPR007011);NIAS_FLcDNA=002-131-G03;Oryzabase=10192;Expression=AK107654;TENOR=Os06t0341300-01;KEGG=Os06t0341300-01
Chr06	irgsp1_rep	five_prime_UTR	13630101	13630214	.	+	.	Parent=Os06t0341300-01
Chr06	irgsp1_rep	CDS	13630215	13630592	.	+	0	Parent=Os06t0341300-01
Chr06	irgsp1_rep	CDS	13630679	13630951	.	+	0	Parent=Os06t0341300-01
Chr06	irgsp1_rep	CDS	13631060	13631242	.	+	0	Parent=Os06t0341300-01
Chr06	irgsp1_rep	three_prime_UTR	13631243	13631408	.	+	.	Parent=Os06t0341300-01
Chr06	irgsp1_rep	mRNA	13631704	13633449	.	-	.	ID=Os06t0341400-01;Name=Os06t0341400-01;Locus_id=Os06g0341400;Note=Hypothetical protein.;Transcript_evidence=AK110872 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-172-E09;Expression=AK110872;TENOR=Os06t0341400-01;KEGG=Os06t0341400-01
Chr06	irgsp1_rep	five_prime_UTR	13632543	13633449	.	-	.	Parent=Os06t0341400-01
Chr06	irgsp1_rep	CDS	13631946	13632542	.	-	0	Parent=Os06t0341400-01
Chr06	irgsp1_rep	three_prime_UTR	13631704	13631945	.	-	.	Parent=Os06t0341400-01
Chr06	irgsp1_rep	mRNA	13631842	13632938	.	+	.	ID=Os06t0341500-01;Name=Os06t0341500-01;Locus_id=Os06g0341500;Note=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor domain containing protein.;Transcript_evidence=AK106755 (DDBJ%2C Best hit);ORF_evidence=Q5Z9Y7 (UniProt);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612);NIAS_FLcDNA=002-115-D06;Expression=AK106755;TENOR=Os06t0341500-01;KEGG=Os06t0341500-01
Chr06	irgsp1_rep	five_prime_UTR	13631842	13631897	.	+	.	Parent=Os06t0341500-01
Chr06	irgsp1_rep	CDS	13631898	13632333	.	+	0	Parent=Os06t0341500-01
Chr06	irgsp1_rep	CDS	13632435	13632775	.	+	2	Parent=Os06t0341500-01
Chr06	irgsp1_rep	three_prime_UTR	13632776	13632938	.	+	.	Parent=Os06t0341500-01
Chr06	irgsp1_rep	mRNA	13635964	13640033	.	-	.	ID=Os06t0341600-01;Name=Os06t0341600-01;Locus_id=Os06g0341600;Note=Conserved hypothetical protein.;Transcript_evidence=AK067335 (DDBJ%2C Best hit);ORF_evidence=B9FT43 (UniProt);NIAS_FLcDNA=J013104A06;TENOR=Os06t0341600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	13639740	13640033	.	-	0	Parent=Os06t0341600-01
Chr06	irgsp1_rep	CDS	13637347	13639635	.	-	0	Parent=Os06t0341600-01
Chr06	irgsp1_rep	CDS	13636371	13636582	.	-	0	Parent=Os06t0341600-01
Chr06	irgsp1_rep	CDS	13636186	13636258	.	-	1	Parent=Os06t0341600-01
Chr06	irgsp1_rep	three_prime_UTR	13635964	13636185	.	-	.	Parent=Os06t0341600-01
Chr06	irgsp1_rep	mRNA	13652913	13653125	.	+	.	ID=Os06t0341801-00;Name=Os06t0341801-00;Locus_id=Os06g0341801;Note=Similar to Maturase K (Fragment).;Transcript_evidence=AY964640 (DDBJ);ORF_evidence=Q9MV44 (UniProt);TENOR=Os06t0341801-00;KEGG=Os06t0341801-00
Chr06	irgsp1_rep	five_prime_UTR	13652913	13652924	.	+	.	Parent=Os06t0341801-00
Chr06	irgsp1_rep	CDS	13652925	13653101	.	+	0	Parent=Os06t0341801-00
Chr06	irgsp1_rep	three_prime_UTR	13653102	13653125	.	+	.	Parent=Os06t0341801-00
Chr06	irgsp1_rep	mRNA	13674054	13676418	.	-	.	ID=Os06t0342000-01;Name=Os06t0342000-01;Locus_id=Os06g0342000;Note=Exostosin-like family protein.;Transcript_evidence=AK101619 (DDBJ%2C Best hit);ORF_evidence=NP_201028.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);NIAS_FLcDNA=J033052I18;Expression=AK101619;TENOR=Os06t0342000-01;KEGG=Os06t0342000-01
Chr06	irgsp1_rep	five_prime_UTR	13676277	13676418	.	-	.	Parent=Os06t0342000-01
Chr06	irgsp1_rep	CDS	13674815	13676276	.	-	0	Parent=Os06t0342000-01
Chr06	irgsp1_rep	CDS	13674425	13674633	.	-	2	Parent=Os06t0342000-01
Chr06	irgsp1_rep	three_prime_UTR	13674054	13674424	.	-	.	Parent=Os06t0342000-01
Chr06	irgsp1_rep	mRNA	13677508	13681736	.	-	.	ID=Os06t0342100-01;Name=Os06t0342100-01;Locus_id=Os06g0342100;Oryzabase Gene Symbol Synonym(s)=SRP19;Oryzabase Gene Name Synonym(s)=signal recognition particle 19;Note=Signal recognition particle 19 kDa protein (SRP19).;Transcript_evidence=AK059915 (DDBJ%2C Best hit);ORF_evidence=P49964 (UniProt);GO=Biological Process: SRP-dependent cotranslational protein targeting to membrane (GO:0006614),Cellular Component: signal recognition particle (GO:0048500),Molecular Function: 7S RNA binding (GO:0008312);InterPro=Signal recognition particle%2C SRP19 subunit (IPR002778);NIAS_FLcDNA=006-209-E10;Oryzabase=14473;Expression=AK059915;TENOR=Os06t0342100-01;KEGG=Os06t0342100-01
Chr06	irgsp1_rep	five_prime_UTR	13681633	13681736	.	-	.	Parent=Os06t0342100-01
Chr06	irgsp1_rep	CDS	13681450	13681632	.	-	0	Parent=Os06t0342100-01
Chr06	irgsp1_rep	CDS	13681230	13681329	.	-	0	Parent=Os06t0342100-01
Chr06	irgsp1_rep	CDS	13677907	13678034	.	-	2	Parent=Os06t0342100-01
Chr06	irgsp1_rep	three_prime_UTR	13677508	13677906	.	-	.	Parent=Os06t0342100-01
Chr06	irgsp1_rep	mRNA	13685423	13686169	.	+	.	ID=Os06t0342200-01;Name=Os06t0342200-01;Locus_id=Os06g0342200;CGSNL Gene Symbol=EIF1A2;CGSNL Gene Name=EUKARYOTIC INITIATION FACTOR 1A-2;Oryzabase Gene Symbol Synonym(s)=OseIF1A-2;Oryzabase Gene Name Synonym(s)=translation initiation factor 1A-2%2C eukaryotic initiation factor 1A-2%2C initiation factor eIF-4C;Note=Similar to Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C).;Transcript_evidence=AK099441 (DDBJ%2C Best hit),AK119687 (DDBJ%2C Best hit),AK120036 (DDBJ%2C Best hit);ORF_evidence=D9I355 (UniProt);GO=Biological Process: translational initiation (GO:0006413),Molecular Function: RNA binding (GO:0003723),Molecular Function: translation initiation factor activity (GO:0003743);InterPro=Translation initiation factor 1A (eIF-1A) (IPR001253),RNA-binding domain%2C S1%2C IF1 type (IPR006196),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),Translation initiation factor 1A (eIF-1A)%2C conserved site (IPR018104);NIAS_FLcDNA=J013020M15,002-157-A08,002-188-D08;Oryzabase=15690;TENOR=Os06t0342200-01
Chr06	irgsp1_rep	five_prime_UTR	13685423	13685533	.	+	.	Parent=Os06t0342200-01
Chr06	irgsp1_rep	CDS	13685534	13685968	.	+	0	Parent=Os06t0342200-01
Chr06	irgsp1_rep	three_prime_UTR	13685969	13686169	.	+	.	Parent=Os06t0342200-01
Chr06	irgsp1_rep	mRNA	13690561	13697904	.	-	.	ID=Os06t0342500-01;Name=Os06t0342500-01;Locus_id=Os06g0342500;Note=K Homology%2C type 1%2C subgroup domain containing protein.;Transcript_evidence=AK242748 (DDBJ%2C Best hit);ORF_evidence=Q5Z9X9 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=K Homology (IPR004087),K Homology%2C type 1 (IPR004088),K Homology%2C type 1%2C subgroup (IPR018111);NIAS_FLcDNA=J090050H12;TENOR=Os06t0342500-01;KEGG=Os06t0342500-01
Chr06	irgsp1_rep	five_prime_UTR	13697760	13697904	.	-	.	Parent=Os06t0342500-01
Chr06	irgsp1_rep	CDS	13697037	13697759	.	-	0	Parent=Os06t0342500-01
Chr06	irgsp1_rep	CDS	13694235	13694687	.	-	0	Parent=Os06t0342500-01
Chr06	irgsp1_rep	CDS	13693273	13693521	.	-	0	Parent=Os06t0342500-01
Chr06	irgsp1_rep	CDS	13691961	13692182	.	-	0	Parent=Os06t0342500-01
Chr06	irgsp1_rep	CDS	13691396	13691475	.	-	0	Parent=Os06t0342500-01
Chr06	irgsp1_rep	CDS	13691216	13691324	.	-	1	Parent=Os06t0342500-01
Chr06	irgsp1_rep	CDS	13691002	13691128	.	-	0	Parent=Os06t0342500-01
Chr06	irgsp1_rep	CDS	13690892	13690917	.	-	2	Parent=Os06t0342500-01
Chr06	irgsp1_rep	three_prime_UTR	13690561	13690891	.	-	.	Parent=Os06t0342500-01
Chr06	irgsp1_rep	mRNA	13704784	13716851	.	+	.	ID=Os06t0342750-01;Name=Os06t0342750-01;Locus_id=Os06g0342750;Note=Similar to predicted protein.;Transcript_evidence=AK288085 (DDBJ%2C Best hit);ORF_evidence=B8B1N4 (UniProt);InterPro=DTW (IPR005636);NIAS_FLcDNA=J075176I16;TENOR=Os06t0342750-01;KEGG=Os06t0342750-01
Chr06	irgsp1_rep	five_prime_UTR	13704784	13704856	.	+	.	Parent=Os06t0342750-01
Chr06	irgsp1_rep	CDS	13704857	13705198	.	+	0	Parent=Os06t0342750-01
Chr06	irgsp1_rep	CDS	13705340	13705480	.	+	0	Parent=Os06t0342750-01
Chr06	irgsp1_rep	CDS	13705679	13705771	.	+	0	Parent=Os06t0342750-01
Chr06	irgsp1_rep	CDS	13705857	13705983	.	+	0	Parent=Os06t0342750-01
Chr06	irgsp1_rep	CDS	13706895	13707001	.	+	2	Parent=Os06t0342750-01
Chr06	irgsp1_rep	CDS	13713212	13713292	.	+	0	Parent=Os06t0342750-01
Chr06	irgsp1_rep	CDS	13715793	13715813	.	+	0	Parent=Os06t0342750-01
Chr06	irgsp1_rep	three_prime_UTR	13715814	13716851	.	+	.	Parent=Os06t0342750-01
Chr06	irgsp1_rep	mRNA	13721461	13722973	.	+	.	ID=Os06t0343000-01;Name=Os06t0343000-01;Locus_id=Os06g0343000;Note=Hypothetical conserved gene.;Transcript_evidence=AK110938 (DDBJ%2C Best hit);ORF_evidence=XP_002438927.1 (RefSeq);InterPro=DTW (IPR005636);NIAS_FLcDNA=002-173-G07;Oryzabase=20456;Expression=AK110938;TENOR=Os06t0343000-01;KEGG=Os06t0343000-01
Chr06	irgsp1_rep	five_prime_UTR	13721461	13722317	.	+	.	Parent=Os06t0343000-01
Chr06	irgsp1_rep	CDS	13722318	13722415	.	+	0	Parent=Os06t0343000-01
Chr06	irgsp1_rep	CDS	13722512	13722731	.	+	1	Parent=Os06t0343000-01
Chr06	irgsp1_rep	three_prime_UTR	13722732	13722973	.	+	.	Parent=Os06t0343000-01
Chr06	irgsp1_rep	mRNA	13723595	13727109	.	-	.	ID=Os06t0343100-01;Name=Os06t0343100-01;Locus_id=Os06g0343100;Note=Similar to ATP-dependent helicase DHX8 (RNA helicase HRH1) (DEAH-box protein 8).;Transcript_evidence=AK100422 (DDBJ%2C Best hit);ORF_evidence=A3BBG7 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C ATP-dependent%2C DEAH-box type%2C conserved site (IPR002464),Ribosomal protein S1%2C RNA-binding domain (IPR003029),Helicase-associated domain (IPR007502),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),Domain of unknown function DUF1605 (IPR011709),Nucleic acid-binding%2C OB-fold (IPR012340),DEAD-like helicase (IPR014001),Nucleic acid-binding%2C OB-fold-like (IPR016027),RNA-binding domain%2C S1 (IPR022967);NIAS_FLcDNA=J023088B11;Expression=AK100422;TENOR=Os06t0343100-01;KEGG=Os06t0343100-01 (EC:3.6.4.13)
Chr06	irgsp1_rep	five_prime_UTR	13727079	13727109	.	-	.	Parent=Os06t0343100-01
Chr06	irgsp1_rep	CDS	13723824	13727078	.	-	0	Parent=Os06t0343100-01
Chr06	irgsp1_rep	three_prime_UTR	13723595	13723823	.	-	.	Parent=Os06t0343100-01
Chr06	irgsp1_rep	mRNA	13723696	13724721	.	-	.	ID=Os06t0343100-02;Name=Os06t0343100-02;Locus_id=Os06g0343100;Note=Similar to predicted protein.;Transcript_evidence=AK058622 (DDBJ%2C Best hit);ORF_evidence=D0MWF7 (UniProt);GO=Molecular Function: helicase activity (GO:0004386);InterPro=Helicase-associated domain (IPR007502),Domain of unknown function DUF1605 (IPR011709);NIAS_FLcDNA=001-018-B10;Expression=AK058622;TENOR=Os06t0343100-02;KEGG=Os06t0343100-02 (EC:3.6.4.13)
Chr06	irgsp1_rep	five_prime_UTR	13724721	13724721	.	-	.	Parent=Os06t0343100-02
Chr06	irgsp1_rep	CDS	13723824	13724720	.	-	0	Parent=Os06t0343100-02
Chr06	irgsp1_rep	three_prime_UTR	13723696	13723823	.	-	.	Parent=Os06t0343100-02
Chr06	irgsp1_rep	mRNA	13727478	13729745	.	-	.	ID=Os06t0343200-01;Name=Os06t0343200-01;Locus_id=Os06g0343200;Note=Non-protein coding transcript.;Transcript_evidence=AK070033 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023038G09;TENOR=Os06t0343200-01
Chr06	irgsp1_rep	exon	13728842	13729745	.	-	.	Parent=Os06t0343200-01
Chr06	irgsp1_rep	exon	13727478	13727934	.	-	.	Parent=Os06t0343200-01
Chr06	irgsp1_rep	mRNA	13743290	13745439	.	+	.	ID=Os06t0343500-01;Name=Os06t0343500-01;Locus_id=Os06g0343500;Note=Hypothetical protein.;Transcript_evidence=AK106646 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-113-E11;Expression=AK106646;TENOR=Os06t0343500-01;KEGG=Os06t0343500-01
Chr06	irgsp1_rep	five_prime_UTR	13743290	13743580	.	+	.	Parent=Os06t0343500-01
Chr06	irgsp1_rep	five_prime_UTR	13743676	13743782	.	+	.	Parent=Os06t0343500-01
Chr06	irgsp1_rep	CDS	13743783	13744466	.	+	0	Parent=Os06t0343500-01
Chr06	irgsp1_rep	three_prime_UTR	13744467	13745439	.	+	.	Parent=Os06t0343500-01
Chr06	irgsp1_rep	mRNA	13743329	13745243	.	-	.	ID=Os06t0343600-01;Name=Os06t0343600-01;Locus_id=Os06g0343600;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK102481 (DDBJ%2C Best hit);ORF_evidence=A2YCM0 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J033094L01;Expression=AK102481;TENOR=Os06t0343600-01;KEGG=Os06t0343600-01
Chr06	irgsp1_rep	five_prime_UTR	13745189	13745243	.	-	.	Parent=Os06t0343600-01
Chr06	irgsp1_rep	CDS	13743755	13745188	.	-	0	Parent=Os06t0343600-01
Chr06	irgsp1_rep	three_prime_UTR	13743329	13743754	.	-	.	Parent=Os06t0343600-01
Chr06	irgsp1_rep	mRNA	13754877	13767220	.	-	.	ID=Os06t0343900-01;Name=Os06t0343900-01;Locus_id=Os06g0343900;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK070940 (DDBJ%2C Best hit);ORF_evidence=NP_001055114.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989);NIAS_FLcDNA=J023066I09;Expression=AK070940;TENOR=Os06t0343900-01;KEGG=Os06t0343900-01
Chr06	irgsp1_rep	five_prime_UTR	13767165	13767220	.	-	.	Parent=Os06t0343900-01
Chr06	irgsp1_rep	CDS	13766865	13767164	.	-	0	Parent=Os06t0343900-01
Chr06	irgsp1_rep	CDS	13764579	13764695	.	-	0	Parent=Os06t0343900-01
Chr06	irgsp1_rep	CDS	13763405	13763469	.	-	0	Parent=Os06t0343900-01
Chr06	irgsp1_rep	CDS	13762278	13762377	.	-	1	Parent=Os06t0343900-01
Chr06	irgsp1_rep	CDS	13762119	13762190	.	-	0	Parent=Os06t0343900-01
Chr06	irgsp1_rep	CDS	13760385	13760444	.	-	0	Parent=Os06t0343900-01
Chr06	irgsp1_rep	CDS	13760160	13760265	.	-	0	Parent=Os06t0343900-01
Chr06	irgsp1_rep	CDS	13759861	13760051	.	-	2	Parent=Os06t0343900-01
Chr06	irgsp1_rep	CDS	13759758	13759772	.	-	0	Parent=Os06t0343900-01
Chr06	irgsp1_rep	three_prime_UTR	13759601	13759757	.	-	.	Parent=Os06t0343900-01
Chr06	irgsp1_rep	three_prime_UTR	13759051	13759178	.	-	.	Parent=Os06t0343900-01
Chr06	irgsp1_rep	three_prime_UTR	13756275	13756543	.	-	.	Parent=Os06t0343900-01
Chr06	irgsp1_rep	three_prime_UTR	13755775	13755915	.	-	.	Parent=Os06t0343900-01
Chr06	irgsp1_rep	three_prime_UTR	13755560	13755699	.	-	.	Parent=Os06t0343900-01
Chr06	irgsp1_rep	three_prime_UTR	13754877	13755480	.	-	.	Parent=Os06t0343900-01
Chr06	irgsp1_rep	mRNA	13780712	13781695	.	+	.	ID=Os06t0344201-00;Name=Os06t0344201-00;Locus_id=Os06g0344201;Note=Conserved hypothetical protein.;Transcript_evidence=CT841775 (DDBJ%2C Best hit);ORF_evidence=Q6EQL0 (UniProt);TENOR=Os06t0344201-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	13780712	13781432	.	+	.	Parent=Os06t0344201-00
Chr06	irgsp1_rep	CDS	13781433	13781624	.	+	0	Parent=Os06t0344201-00
Chr06	irgsp1_rep	three_prime_UTR	13781625	13781695	.	+	.	Parent=Os06t0344201-00
Chr06	irgsp1_rep	mRNA	13804017	13805898	.	+	.	ID=Os06t0344900-01;Name=Os06t0344900-01;Locus_id=Os06g0344900;RAP-DB Gene Symbol Synonym(s)=OMTN5%2C  ONAC92;RAP-DB Gene Name Synonym(s)=Oryza miR164-targeted NAC5%2C NAC domain-containing protein 92;CGSNL Gene Symbol=NAM;CGSNL Gene Name=NO APICAL MERISTEM;Oryzabase Gene Symbol Synonym(s)=OsNAM%2C OMTN5%2C ONAC092%2C ONAC92%2C NAC92%2C CUC2%2C OsNAM/CUC2%2C DLN165%2C OsDLN165;Oryzabase Gene Name Synonym(s)=no apical meristem%2C Petunia NO APICAL MERISTEM ortholog%2C miR164-targeted NAC5%2C Oryza miR164-targeted NAC5%2C NAC domain-containing protein 092%2C NAC domain-containing protein 92%2C DLN repressor 165%2C DLN motif protein 165;Note=NAC transcription factor;Transcript_evidence=AK448672 (Wheat FLcDNA);ORF_evidence=Q5Z7R9;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=NAC domain superfamily (IPR036093),NAC domain (IPR003441);Manual Curation=January 5%2C 2018;Literature_PMID=24604734;Oryzabase=6236;TENOR=Os06t0344900-00
Chr06	irgsp1_rep	CDS	13804017	13804508	.	+	0	Parent=Os06t0344900-01
Chr06	irgsp1_rep	CDS	13805186	13805815	.	+	0	Parent=Os06t0344900-01
Chr06	irgsp1_rep	three_prime_UTR	13805816	13805898	.	+	.	Parent=Os06t0344900-01
Chr06	irgsp1_rep	mRNA	13835593	13839057	.	+	.	ID=Os06t0345200-01;Name=Os06t0345200-01;Locus_id=Os06g0345200;CGSNL Gene Symbol=NAAT4;CGSNL Gene Name=NICOTINAMINE AMINOTRANSFERASE 4;Oryzabase Gene Symbol Synonym(s)=OsNAAT4%2C OsNAAT1;Oryzabase Gene Name Synonym(s)=sativa nicotianamine aminotransferase 4;Note=Similar to Nicotianamine aminotransferase.;Transcript_evidence=AK108576 (DDBJ%2C Best hit);ORF_evidence=A9CM06 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: biosynthetic process (GO:0009058),Biological Process: 1-aminocyclopropane-1-carboxylate biosynthetic process (GO:0042218),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transaminase activity (GO:0008483),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: 1-aminocyclopropane-1-carboxylate synthase activity (GO:0016847),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=1-aminocyclopropane-1-carboxylate synthase (IPR001176),Aminotransferase%2C class I/classII (IPR004839),Tyrosine/nicotianamine aminotransferase (IPR005958),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=002-145-G02;Oryzabase=8325;Expression=AK108576;TENOR=Os06t0345200-01;KEGG=Os06t0345200-01 (EC:2.6.1.5)
Chr06	irgsp1_rep	five_prime_UTR	13835593	13835593	.	+	.	Parent=Os06t0345200-01
Chr06	irgsp1_rep	CDS	13835594	13835937	.	+	0	Parent=Os06t0345200-01
Chr06	irgsp1_rep	CDS	13836795	13837134	.	+	1	Parent=Os06t0345200-01
Chr06	irgsp1_rep	CDS	13837228	13837446	.	+	0	Parent=Os06t0345200-01
Chr06	irgsp1_rep	CDS	13838487	13838597	.	+	0	Parent=Os06t0345200-01
Chr06	irgsp1_rep	three_prime_UTR	13838598	13839057	.	+	.	Parent=Os06t0345200-01
Chr06	irgsp1_rep	mRNA	13835608	13844081	.	+	.	ID=Os06t0345200-02;Name=Os06t0345200-02;Locus_id=Os06g0345200;CGSNL Gene Symbol=NAAT4;CGSNL Gene Name=NICOTINAMINE AMINOTRANSFERASE 4;Oryzabase Gene Symbol Synonym(s)=OsNAAT4%2C OsNAAT1;Oryzabase Gene Name Synonym(s)=sativa nicotianamine aminotransferase 4;Note=Similar to Nicotianamine aminotransferase.;Transcript_evidence=AK107186 (DDBJ%2C Best hit);ORF_evidence=A9CM06 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: biosynthetic process (GO:0009058),Biological Process: 1-aminocyclopropane-1-carboxylate biosynthetic process (GO:0042218),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transaminase activity (GO:0008483),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: 1-aminocyclopropane-1-carboxylate synthase activity (GO:0016847),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=1-aminocyclopropane-1-carboxylate synthase (IPR001176),Aminotransferase%2C class I/classII (IPR004839),Tyrosine/nicotianamine aminotransferase (IPR005958),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424),Tyrosine transaminase (IPR021178);NIAS_FLcDNA=002-124-H09;Oryzabase=8325;TENOR=Os06t0345200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	13835608	13835608	.	+	.	Parent=Os06t0345200-02
Chr06	irgsp1_rep	CDS	13835609	13835937	.	+	0	Parent=Os06t0345200-02
Chr06	irgsp1_rep	CDS	13836795	13837134	.	+	1	Parent=Os06t0345200-02
Chr06	irgsp1_rep	CDS	13837228	13837446	.	+	0	Parent=Os06t0345200-02
Chr06	irgsp1_rep	CDS	13838487	13838546	.	+	0	Parent=Os06t0345200-02
Chr06	irgsp1_rep	CDS	13841326	13841481	.	+	0	Parent=Os06t0345200-02
Chr06	irgsp1_rep	CDS	13841547	13841640	.	+	0	Parent=Os06t0345200-02
Chr06	irgsp1_rep	CDS	13843583	13843761	.	+	2	Parent=Os06t0345200-02
Chr06	irgsp1_rep	three_prime_UTR	13843762	13844081	.	+	.	Parent=Os06t0345200-02
Chr06	irgsp1_rep	mRNA	13873300	13873657	.	-	.	ID=Os06t0345732-00;Name=Os06t0345732-00;Locus_id=Os06g0345732;Note=Non-protein coding transcript.;Transcript_evidence=AK241165 (DDBJ%2C Secondary hit);ORF_evidence=NONE;TENOR=Os06t0345732-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	exon	13873546	13873657	.	-	.	Parent=Os06t0345732-00
Chr06	irgsp1_rep	exon	13873300	13873538	.	-	.	Parent=Os06t0345732-00
Chr06	irgsp1_rep	mRNA	13886690	13888915	.	-	.	ID=Os06t0346100-01;Name=Os06t0346100-01;Locus_id=Os06g0346100;Note=Hypothetical conserved gene.;Transcript_evidence=AK103642 (DDBJ%2C Best hit);ORF_evidence=NP_001172422.1 (RefSeq);NIAS_FLcDNA=J033134M14;Expression=AK103642;TENOR=Os06t0346100-01;KEGG=Os06t0346100-01
Chr06	irgsp1_rep	five_prime_UTR	13888914	13888915	.	-	.	Parent=Os06t0346100-01
Chr06	irgsp1_rep	CDS	13888805	13888913	.	-	0	Parent=Os06t0346100-01
Chr06	irgsp1_rep	CDS	13888709	13888716	.	-	2	Parent=Os06t0346100-01
Chr06	irgsp1_rep	three_prime_UTR	13886690	13888708	.	-	.	Parent=Os06t0346100-01
Chr06	irgsp1_rep	mRNA	13888929	13889644	.	-	.	ID=Os06t0346201-00;Name=Os06t0346201-00;Locus_id=Os06g0346201;Note=Hypothetical conserved gene.;Transcript_evidence=CT836239 (DDBJ%2C Best hit);ORF_evidence=NP_001172422.1 (RefSeq);TENOR=Os06t0346201-00
Chr06	irgsp1_rep	five_prime_UTR	13889643	13889644	.	-	.	Parent=Os06t0346201-00
Chr06	irgsp1_rep	CDS	13889389	13889642	.	-	0	Parent=Os06t0346201-00
Chr06	irgsp1_rep	CDS	13889052	13889369	.	-	1	Parent=Os06t0346201-00
Chr06	irgsp1_rep	CDS	13888929	13888981	.	-	1	Parent=Os06t0346201-00
Chr06	irgsp1_rep	mRNA	13892149	13897389	.	+	.	ID=Os06t0346300-00;Name=Os06t0346300-00;Locus_id=Os06g0346300;Note=Similar to ACX4 (ACYL-COA OXIDASE 4)%3B acyl-CoA oxidase/ oxidoreductase.;Transcript_evidence=EU966480 (DDBJ);ORF_evidence=NP_190752.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995),Molecular Function: oxidoreductase activity%2C acting on the CH-CH group of donors (GO:0016627);InterPro=Acyl-CoA dehydrogenase%2C conserved site (IPR006089),Acyl-CoA oxidase/dehydrogenase%2C type 1 (IPR006090),Acyl-CoA oxidase/dehydrogenase%2C central domain (IPR006091),Acyl-CoA dehydrogenase/oxidase C-terminal (IPR009075),Acyl-CoA dehydrogenase/oxidase (IPR009100);TENOR=Os06t0346300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	13892149	13892274	.	+	.	Parent=Os06t0346300-00
Chr06	irgsp1_rep	five_prime_UTR	13892881	13892938	.	+	.	Parent=Os06t0346300-00
Chr06	irgsp1_rep	CDS	13892939	13893004	.	+	0	Parent=Os06t0346300-00
Chr06	irgsp1_rep	CDS	13894764	13894873	.	+	0	Parent=Os06t0346300-00
Chr06	irgsp1_rep	CDS	13895009	13895168	.	+	1	Parent=Os06t0346300-00
Chr06	irgsp1_rep	CDS	13895487	13895563	.	+	0	Parent=Os06t0346300-00
Chr06	irgsp1_rep	CDS	13895664	13895808	.	+	1	Parent=Os06t0346300-00
Chr06	irgsp1_rep	CDS	13895930	13896022	.	+	0	Parent=Os06t0346300-00
Chr06	irgsp1_rep	CDS	13897273	13897389	.	+	0	Parent=Os06t0346300-00
Chr06	irgsp1_rep	mRNA	13899346	13901956	.	-	.	ID=Os06t0346400-01;Name=Os06t0346400-01;Locus_id=Os06g0346400;Note=Conserved hypothetical protein.;Transcript_evidence=AK105492 (DDBJ%2C Best hit);ORF_evidence=NP_001174852.1 (RefSeq);NIAS_FLcDNA=001-127-C02;TENOR=Os06t0346400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	13901776	13901956	.	-	.	Parent=Os06t0346400-01
Chr06	irgsp1_rep	CDS	13901428	13901775	.	-	0	Parent=Os06t0346400-01
Chr06	irgsp1_rep	three_prime_UTR	13901344	13901427	.	-	.	Parent=Os06t0346400-01
Chr06	irgsp1_rep	three_prime_UTR	13899782	13900683	.	-	.	Parent=Os06t0346400-01
Chr06	irgsp1_rep	three_prime_UTR	13899616	13899663	.	-	.	Parent=Os06t0346400-01
Chr06	irgsp1_rep	three_prime_UTR	13899346	13899536	.	-	.	Parent=Os06t0346400-01
Chr06	irgsp1_rep	mRNA	13905136	13907351	.	-	.	ID=Os06t0346600-01;Name=Os06t0346600-01;Locus_id=Os06g0346600;Note=Hypothetical conserved gene.;Transcript_evidence=AK061139 (DDBJ%2C Best hit);ORF_evidence=A3BBI2 (UniProt);NIAS_FLcDNA=006-208-B08;Expression=AK061139;TENOR=Os06t0346600-01;KEGG=Os06t0346600-01
Chr06	irgsp1_rep	five_prime_UTR	13907028	13907351	.	-	.	Parent=Os06t0346600-01
Chr06	irgsp1_rep	CDS	13906881	13907027	.	-	0	Parent=Os06t0346600-01
Chr06	irgsp1_rep	CDS	13906579	13906681	.	-	0	Parent=Os06t0346600-01
Chr06	irgsp1_rep	CDS	13906471	13906481	.	-	2	Parent=Os06t0346600-01
Chr06	irgsp1_rep	three_prime_UTR	13906394	13906470	.	-	.	Parent=Os06t0346600-01
Chr06	irgsp1_rep	three_prime_UTR	13906268	13906304	.	-	.	Parent=Os06t0346600-01
Chr06	irgsp1_rep	three_prime_UTR	13906111	13906185	.	-	.	Parent=Os06t0346600-01
Chr06	irgsp1_rep	three_prime_UTR	13905136	13905454	.	-	.	Parent=Os06t0346600-01
Chr06	irgsp1_rep	mRNA	13911670	13912456	.	-	.	ID=Os06t0346900-01;Name=Os06t0346900-01;Locus_id=Os06g0346900;Note=Hypothetical gene.;Transcript_evidence=AK106828 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-116-F04;Expression=AK106828;TENOR=Os06t0346900-01;KEGG=Os06t0346900-01
Chr06	irgsp1_rep	CDS	13912382	13912456	.	-	0	Parent=Os06t0346900-01
Chr06	irgsp1_rep	CDS	13912092	13912298	.	-	0	Parent=Os06t0346900-01
Chr06	irgsp1_rep	three_prime_UTR	13911670	13912091	.	-	.	Parent=Os06t0346900-01
Chr06	irgsp1_rep	mRNA	13910493	13912343	.	-	.	ID=Os06t0346900-02;Name=Os06t0346900-02;Locus_id=Os06g0346900;Note=Hypothetical gene.;Transcript_evidence=AK073489 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033040H21;Expression=AK073489;TENOR=Os06t0346900-02;KEGG=Os06t0346900-02
Chr06	irgsp1_rep	CDS	13912092	13912343	.	-	0	Parent=Os06t0346900-02
Chr06	irgsp1_rep	three_prime_UTR	13910493	13912091	.	-	.	Parent=Os06t0346900-02
Chr06	irgsp1_rep	mRNA	13947426	13951272	.	+	.	ID=Os06t0347100-01;Name=Os06t0347100-01;Locus_id=Os06g0347100;Note=Similar to Acyl-coenzyme A oxidase 4%2C peroxisomal (EC 1.3.3.6) (AOX 4) (Short- chain acyl-CoA oxidase) (SAOX) (AtCX4) (G6p) (AtG6).;Transcript_evidence=AK063762 (DDBJ%2C Best hit);ORF_evidence=NP_190752.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995),Molecular Function: oxidoreductase activity%2C acting on the CH-CH group of donors (GO:0016627);InterPro=Acyl-CoA dehydrogenase%2C conserved site (IPR006089),Acyl-CoA oxidase/dehydrogenase%2C type 1 (IPR006090),Acyl-CoA oxidase/dehydrogenase%2C central domain (IPR006091),Acyl-CoA dehydrogenase/oxidase C-terminal (IPR009075),Acyl-CoA dehydrogenase/oxidase (IPR009100);NIAS_FLcDNA=001-121-B01;Expression=AK063762;TENOR=Os06t0347100-01;KEGG=Os06t0347100-01 (EC:1.3.3.6%2C EC:1.3.99.7)
Chr06	irgsp1_rep	five_prime_UTR	13947426	13947844	.	+	.	Parent=Os06t0347100-01
Chr06	irgsp1_rep	CDS	13947845	13947954	.	+	0	Parent=Os06t0347100-01
Chr06	irgsp1_rep	CDS	13948090	13948249	.	+	1	Parent=Os06t0347100-01
Chr06	irgsp1_rep	CDS	13948610	13948686	.	+	0	Parent=Os06t0347100-01
Chr06	irgsp1_rep	CDS	13949502	13949673	.	+	1	Parent=Os06t0347100-01
Chr06	irgsp1_rep	CDS	13949783	13949875	.	+	0	Parent=Os06t0347100-01
Chr06	irgsp1_rep	CDS	13950820	13950936	.	+	0	Parent=Os06t0347100-01
Chr06	irgsp1_rep	three_prime_UTR	13950937	13951272	.	+	.	Parent=Os06t0347100-01
Chr06	irgsp1_rep	mRNA	13971337	13973750	.	+	.	ID=Os06t0347300-00;Name=Os06t0347300-00;Locus_id=Os06g0347300;Note=Hypothetical conserved gene.;Transcript_evidence=CT836211 (DDBJ%2C Best hit);ORF_evidence=Q5Z5M4 (UniProt);TENOR=Os06t0347300-00;KEGG=Os06t0347300-00
Chr06	irgsp1_rep	five_prime_UTR	13971337	13971394	.	+	.	Parent=Os06t0347300-00
Chr06	irgsp1_rep	CDS	13971395	13971406	.	+	0	Parent=Os06t0347300-00
Chr06	irgsp1_rep	CDS	13971541	13971915	.	+	0	Parent=Os06t0347300-00
Chr06	irgsp1_rep	CDS	13973505	13973564	.	+	0	Parent=Os06t0347300-00
Chr06	irgsp1_rep	three_prime_UTR	13973565	13973750	.	+	.	Parent=Os06t0347300-00
Chr06	irgsp1_rep	mRNA	13996413	14009042	.	+	.	ID=Os06t0347700-00;Name=Os06t0347700-00;Locus_id=Os06g0347700;CGSNL Gene Symbol=MADS59;CGSNL Gene Name=MADS BOX GENE 59;Oryzabase Gene Symbol Synonym(s)=OsMADS59;Oryzabase Gene Name Synonym(s)=MADS box gene59%2C MADS box gene 59%2C MADS-box transcription factor 59;Note=Transcription factor%2C MADS-box domain containing protein.;Transcript_evidence=AM502900 (DDBJ);ORF_evidence=F2E5L8 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box (IPR002100),Transcription factor%2C K-box (IPR002487);Oryzabase=12297;TENOR=Os06t0347700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	13996413	13996413	.	+	.	Parent=Os06t0347700-00
Chr06	irgsp1_rep	CDS	13996414	13996595	.	+	0	Parent=Os06t0347700-00
Chr06	irgsp1_rep	CDS	14000494	14000569	.	+	1	Parent=Os06t0347700-00
Chr06	irgsp1_rep	CDS	14008181	14008242	.	+	0	Parent=Os06t0347700-00
Chr06	irgsp1_rep	CDS	14008463	14008586	.	+	1	Parent=Os06t0347700-00
Chr06	irgsp1_rep	three_prime_UTR	14008587	14008605	.	+	.	Parent=Os06t0347700-00
Chr06	irgsp1_rep	three_prime_UTR	14008959	14009042	.	+	.	Parent=Os06t0347700-00
Chr06	irgsp1_rep	mRNA	14005109	14005851	.	-	.	ID=Os06t0347966-01;Name=Os06t0347966-01;Locus_id=Os06g0347966;Note=Conserved hypothetical protein.;Transcript_evidence=AK241709 (DDBJ%2C Best hit);ORF_evidence=NP_001172674.1 (RefSeq);NIAS_FLcDNA=J065197D01;TENOR=Os06t0347966-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	14005563	14005851	.	-	.	Parent=Os06t0347966-01
Chr06	irgsp1_rep	CDS	14005227	14005562	.	-	0	Parent=Os06t0347966-01
Chr06	irgsp1_rep	three_prime_UTR	14005109	14005226	.	-	.	Parent=Os06t0347966-01
Chr06	irgsp1_rep	mRNA	14078261	14082137	.	+	.	ID=Os06t0348800-01;Name=Os06t0348800-01;Locus_id=Os06g0348800;RAP-DB Gene Symbol Synonym(s)=OsGLK1;RAP-DB Gene Name Synonym(s)=Golden2-like 1;Oryzabase Gene Symbol Synonym(s)=OsGLK1%2C OsGlk1%2C GLK1;Oryzabase Gene Name Synonym(s)=light-related transcription factor OsGLK1%2C Golden2-like 1%2C G2-like 1%2C GOLDEN2-LIKE1;Note=GARP transcription factor%2C Orthologous to maize Golden2-like 1%2C Regulation of chloroplast development;Transcript_evidence=AK122161,AK061946;ORF_evidence=Q5Z5I4;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeobox-like domain superfamily (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930),Myb domain%2C plants (IPR006447);NIAS_FLcDNA=J033147G01,001-042-E04;Manual Curation=October 19%2C 2020;Literature_PMID=19808806;Oryzabase=9706;Expression=AK122161;TENOR=Os06t0348800-01;KEGG=Os06t0348800-01
Chr06	irgsp1_rep	five_prime_UTR	14078261	14078491	.	+	.	Parent=Os06t0348800-01
Chr06	irgsp1_rep	CDS	14078492	14079037	.	+	0	Parent=Os06t0348800-01
Chr06	irgsp1_rep	CDS	14079126	14079266	.	+	0	Parent=Os06t0348800-01
Chr06	irgsp1_rep	CDS	14080804	14081154	.	+	0	Parent=Os06t0348800-01
Chr06	irgsp1_rep	CDS	14081274	14081333	.	+	0	Parent=Os06t0348800-01
Chr06	irgsp1_rep	CDS	14081464	14081583	.	+	0	Parent=Os06t0348800-01
Chr06	irgsp1_rep	CDS	14081772	14081921	.	+	0	Parent=Os06t0348800-01
Chr06	irgsp1_rep	three_prime_UTR	14081922	14082137	.	+	.	Parent=Os06t0348800-01
Chr06	irgsp1_rep	mRNA	14078397	14082172	.	+	.	ID=Os06t0348800-02;Name=Os06t0348800-02;Locus_id=Os06g0348800;Oryzabase Gene Symbol Synonym(s)=OsGLK1%2C OsGlk1%2C GLK1;Oryzabase Gene Name Synonym(s)=light-related transcription factor OsGLK1%2C Golden2-like 1%2C G2-like 1%2C GOLDEN2-LIKE1;Note=Homeodomain-like containing protein.;Transcript_evidence=AK098915 (DDBJ%2C Best hit);ORF_evidence=A1E457 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J013002I19;Oryzabase=9706;Expression=AK098915;TENOR=Os06t0348800-02;KEGG=Os06t0348800-02
Chr06	irgsp1_rep	five_prime_UTR	14078397	14078491	.	+	.	Parent=Os06t0348800-02
Chr06	irgsp1_rep	CDS	14078492	14078814	.	+	0	Parent=Os06t0348800-02
Chr06	irgsp1_rep	CDS	14078914	14079037	.	+	1	Parent=Os06t0348800-02
Chr06	irgsp1_rep	CDS	14079126	14079266	.	+	0	Parent=Os06t0348800-02
Chr06	irgsp1_rep	CDS	14080804	14081154	.	+	0	Parent=Os06t0348800-02
Chr06	irgsp1_rep	CDS	14081274	14081333	.	+	0	Parent=Os06t0348800-02
Chr06	irgsp1_rep	CDS	14081464	14081583	.	+	0	Parent=Os06t0348800-02
Chr06	irgsp1_rep	CDS	14081772	14081921	.	+	0	Parent=Os06t0348800-02
Chr06	irgsp1_rep	three_prime_UTR	14081922	14082172	.	+	.	Parent=Os06t0348800-02
Chr06	irgsp1_rep	mRNA	14078397	14082203	.	+	.	ID=Os06t0348800-03;Name=Os06t0348800-03;Locus_id=Os06g0348800;Oryzabase Gene Symbol Synonym(s)=OsGLK1%2C OsGlk1%2C GLK1;Oryzabase Gene Name Synonym(s)=light-related transcription factor OsGLK1%2C Golden2-like 1%2C G2-like 1%2C GOLDEN2-LIKE1;Note=Transfactor-like protein.;Transcript_evidence=AK065184 (DDBJ%2C Best hit),AK098909 (DDBJ%2C Best hit);ORF_evidence=A1E457 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J013002D22,J013002F22;Oryzabase=9706;Expression=AK065184;TENOR=Os06t0348800-03;KEGG=Os06t0348800-03
Chr06	irgsp1_rep	five_prime_UTR	14078397	14078491	.	+	.	Parent=Os06t0348800-03
Chr06	irgsp1_rep	CDS	14078492	14079037	.	+	0	Parent=Os06t0348800-03
Chr06	irgsp1_rep	CDS	14079126	14079266	.	+	0	Parent=Os06t0348800-03
Chr06	irgsp1_rep	CDS	14080804	14081154	.	+	0	Parent=Os06t0348800-03
Chr06	irgsp1_rep	CDS	14081274	14081333	.	+	0	Parent=Os06t0348800-03
Chr06	irgsp1_rep	CDS	14081464	14081583	.	+	0	Parent=Os06t0348800-03
Chr06	irgsp1_rep	CDS	14081772	14081921	.	+	0	Parent=Os06t0348800-03
Chr06	irgsp1_rep	three_prime_UTR	14081922	14082203	.	+	.	Parent=Os06t0348800-03
Chr06	irgsp1_rep	mRNA	14150947	14153224	.	-	.	ID=Os06t0349700-00;Name=Os06t0349700-00;Locus_id=Os06g0349700;Oryzabase Gene Symbol Synonym(s)=OsF5HL%2C F5HL%2C CYP84A7;Oryzabase Gene Name Synonym(s)=Ferulate-5-hydroxylase;Note=CytoChrome P450 family protein.;Transcript_evidence=AB207252 (DDBJ%2C Best hit);ORF_evidence=B6SY30 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);Oryzabase=13674;TENOR=Os06t0349700-00;KEGG=Os06t0349700-00 (EC:1.14.-.-)
Chr06	irgsp1_rep	CDS	14153072	14153224	.	-	0	Parent=Os06t0349700-00
Chr06	irgsp1_rep	CDS	14151649	14152566	.	-	0	Parent=Os06t0349700-00
Chr06	irgsp1_rep	CDS	14151391	14151576	.	-	0	Parent=Os06t0349700-00
Chr06	irgsp1_rep	CDS	14150947	14151279	.	-	0	Parent=Os06t0349700-00
Chr06	irgsp1_rep	mRNA	14150957	14151583	.	+	.	ID=Os06t0349750-00;Name=Os06t0349750-00;Locus_id=Os06g0349750;Note=Hypothetical protein.;Transcript_evidence=EU955821 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0349750-00
Chr06	irgsp1_rep	five_prime_UTR	14150957	14150958	.	+	.	Parent=Os06t0349750-00
Chr06	irgsp1_rep	CDS	14150959	14151474	.	+	0	Parent=Os06t0349750-00
Chr06	irgsp1_rep	three_prime_UTR	14151475	14151583	.	+	.	Parent=Os06t0349750-00
Chr06	irgsp1_rep	mRNA	14170172	14170918	.	-	.	ID=Os06t0349800-01;Name=Os06t0349800-01;Locus_id=Os06g0349800;Note=Conserved hypothetical protein.;Transcript_evidence=AK062447 (DDBJ%2C Best hit);ORF_evidence=B8B1P7 (UniProt);NIAS_FLcDNA=001-103-B10;Expression=AK062447;TENOR=Os06t0349800-01;KEGG=Os06t0349800-01
Chr06	irgsp1_rep	five_prime_UTR	14170858	14170918	.	-	.	Parent=Os06t0349800-01
Chr06	irgsp1_rep	CDS	14170390	14170857	.	-	0	Parent=Os06t0349800-01
Chr06	irgsp1_rep	three_prime_UTR	14170172	14170389	.	-	.	Parent=Os06t0349800-01
Chr06	irgsp1_rep	mRNA	14193884	14195442	.	-	.	ID=Os06t0350200-01;Name=Os06t0350200-01;Locus_id=Os06g0350200;Note=Hypothetical gene.;Transcript_evidence=AK099897 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013113M15;Expression=AK099897;TENOR=Os06t0350200-01;KEGG=Os06t0350200-01
Chr06	irgsp1_rep	five_prime_UTR	14195144	14195442	.	-	.	Parent=Os06t0350200-01
Chr06	irgsp1_rep	CDS	14194928	14195143	.	-	0	Parent=Os06t0350200-01
Chr06	irgsp1_rep	three_prime_UTR	14193884	14194927	.	-	.	Parent=Os06t0350200-01
Chr06	irgsp1_rep	mRNA	14208411	14210920	.	+	.	ID=Os06t0350600-00;Name=Os06t0350600-00;Locus_id=Os06g0350600;Note=Similar to Pathogenesis-related protein 1 (Fragment).;Transcript_evidence=EU966479 (DDBJ);ORF_evidence=A0MZ69 (UniProt);InterPro=Allergen V5/Tpx-1-related (IPR001283),CAP domain (IPR014044);TENOR=Os06t0350600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	14208411	14208716	.	+	0	Parent=Os06t0350600-00
Chr06	irgsp1_rep	CDS	14210471	14210920	.	+	0	Parent=Os06t0350600-00
Chr06	irgsp1_rep	mRNA	14221117	14227611	.	-	.	ID=Os06t0350700-01;Name=Os06t0350700-01;Locus_id=Os06g0350700;Note=Similar to OSIGBa0109M01.4 protein.;Transcript_evidence=AK288252 (DDBJ%2C Best hit);ORF_evidence=Q01M89 (UniProt);NIAS_FLcDNA=J090015F18;TENOR=Os06t0350700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	14222189	14227611	.	-	.	Parent=Os06t0350700-01
Chr06	irgsp1_rep	CDS	14221916	14222188	.	-	0	Parent=Os06t0350700-01
Chr06	irgsp1_rep	three_prime_UTR	14221117	14221915	.	-	.	Parent=Os06t0350700-01
Chr06	irgsp1_rep	mRNA	14281547	14290711	.	+	.	ID=Os06t0351500-01;Name=Os06t0351500-01;Locus_id=Os06g0351500;CGSNL Gene Symbol=GELP83;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 83;Oryzabase Gene Symbol Synonym(s)=OsGELP83%2C OsGELP83a%2C OsGELP83b;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 83;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK061188 (DDBJ%2C Best hit),AK067876 (DDBJ%2C Best hit),AK099072 (DDBJ%2C Best hit);ORF_evidence=NP_001150585.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=006-209-E11,J013122D17,J013168L24;Oryzabase=11033;TENOR=Os06t0351500-01
Chr06	irgsp1_rep	five_prime_UTR	14281547	14281575	.	+	.	Parent=Os06t0351500-01
Chr06	irgsp1_rep	CDS	14281576	14281909	.	+	0	Parent=Os06t0351500-01
Chr06	irgsp1_rep	CDS	14287140	14287267	.	+	2	Parent=Os06t0351500-01
Chr06	irgsp1_rep	CDS	14287423	14287656	.	+	0	Parent=Os06t0351500-01
Chr06	irgsp1_rep	CDS	14288526	14288778	.	+	0	Parent=Os06t0351500-01
Chr06	irgsp1_rep	CDS	14290484	14290671	.	+	2	Parent=Os06t0351500-01
Chr06	irgsp1_rep	three_prime_UTR	14290672	14290711	.	+	.	Parent=Os06t0351500-01
Chr06	irgsp1_rep	mRNA	14347071	14348226	.	-	.	ID=Os06t0352200-01;Name=Os06t0352200-01;Locus_id=Os06g0352200;Note=Protein of unknown function DUF679 family protein.;Transcript_evidence=AK071746 (DDBJ%2C Best hit);ORF_evidence=A2YCQ7 (UniProt);InterPro=Protein of unknown function DUF679 (IPR007770);NIAS_FLcDNA=J023111G24;Expression=AK071746;TENOR=Os06t0352200-01;KEGG=Os06t0352200-01
Chr06	irgsp1_rep	five_prime_UTR	14348210	14348226	.	-	.	Parent=Os06t0352200-01
Chr06	irgsp1_rep	CDS	14347448	14348209	.	-	0	Parent=Os06t0352200-01
Chr06	irgsp1_rep	three_prime_UTR	14347071	14347447	.	-	.	Parent=Os06t0352200-01
Chr06	irgsp1_rep	mRNA	14387206	14390175	.	-	.	ID=Os06t0352900-01;Name=Os06t0352900-01;Locus_id=Os06g0352900;Note=Conserved hypothetical protein.;Transcript_evidence=AK121496 (DDBJ%2C Best hit);ORF_evidence=A2YCR2 (UniProt);NIAS_FLcDNA=J033001G17;Expression=AK121496;TENOR=Os06t0352900-01;KEGG=Os06t0352900-01
Chr06	irgsp1_rep	five_prime_UTR	14389975	14390175	.	-	.	Parent=Os06t0352900-01
Chr06	irgsp1_rep	CDS	14387437	14389974	.	-	0	Parent=Os06t0352900-01
Chr06	irgsp1_rep	three_prime_UTR	14387206	14387436	.	-	.	Parent=Os06t0352900-01
Chr06	irgsp1_rep	mRNA	14387246	14388593	.	-	.	ID=Os06t0352900-02;Name=Os06t0352900-02;Locus_id=Os06g0352900;Note=Hypothetical conserved gene.;Transcript_evidence=AK060651 (DDBJ%2C Best hit);ORF_evidence=A3BBK6 (UniProt);NIAS_FLcDNA=001-027-H04;Expression=AK060651;TENOR=Os06t0352900-02;KEGG=Os06t0352900-02
Chr06	irgsp1_rep	five_prime_UTR	14388592	14388593	.	-	.	Parent=Os06t0352900-02
Chr06	irgsp1_rep	CDS	14387437	14388591	.	-	0	Parent=Os06t0352900-02
Chr06	irgsp1_rep	three_prime_UTR	14387246	14387436	.	-	.	Parent=Os06t0352900-02
Chr06	irgsp1_rep	mRNA	14418163	14428791	.	-	.	ID=Os06t0353400-01;Name=Os06t0353400-01;Locus_id=Os06g0353400;Note=Similar to Histone mRNA exonuclease 1.;Transcript_evidence=AK120298 (DDBJ%2C Best hit);ORF_evidence=B6T5F9 (UniProt);NIAS_FLcDNA=J013051P12;Expression=AK120298;TENOR=Os06t0353400-01;KEGG=Os06t0353400-01
Chr06	irgsp1_rep	five_prime_UTR	14428731	14428791	.	-	.	Parent=Os06t0353400-01
Chr06	irgsp1_rep	CDS	14428455	14428730	.	-	0	Parent=Os06t0353400-01
Chr06	irgsp1_rep	CDS	14422605	14422829	.	-	0	Parent=Os06t0353400-01
Chr06	irgsp1_rep	three_prime_UTR	14421481	14422604	.	-	.	Parent=Os06t0353400-01
Chr06	irgsp1_rep	three_prime_UTR	14419584	14421327	.	-	.	Parent=Os06t0353400-01
Chr06	irgsp1_rep	three_prime_UTR	14419114	14419237	.	-	.	Parent=Os06t0353400-01
Chr06	irgsp1_rep	three_prime_UTR	14418163	14418986	.	-	.	Parent=Os06t0353400-01
Chr06	irgsp1_rep	mRNA	14428123	14428766	.	-	.	ID=Os06t0353400-02;Name=Os06t0353400-02;Locus_id=Os06g0353400;Note=Hypothetical conserved gene.;Transcript_evidence=AK071268 (DDBJ%2C Best hit);ORF_evidence=B9G2Q2 (UniProt);NIAS_FLcDNA=J023087P03;Expression=AK071268;TENOR=Os06t0353400-02;KEGG=Os06t0353400-02
Chr06	irgsp1_rep	five_prime_UTR	14428731	14428766	.	-	.	Parent=Os06t0353400-02
Chr06	irgsp1_rep	CDS	14428404	14428730	.	-	0	Parent=Os06t0353400-02
Chr06	irgsp1_rep	three_prime_UTR	14428123	14428403	.	-	.	Parent=Os06t0353400-02
Chr06	irgsp1_rep	mRNA	14504152	14512950	.	-	.	ID=Os06t0354500-01;Name=Os06t0354500-01;Locus_id=Os06g0354500;Oryzabase Gene Symbol Synonym(s)=ACX3%2C OsACX3;Oryzabase Gene Name Synonym(s)=acyl-CoA oxidase 3;Note=Similar to Acyl-coenzyme A oxidase 3%2C peroxisomal precursor (EC 1.3.3.6) (AOX 3) (Medium-chain acyl-CoA oxidase) (AtCX3).;Transcript_evidence=AK066934 (DDBJ%2C Best hit);ORF_evidence=NP_001152024.1 (RefSeq);GO=Biological Process: fatty acid metabolic process (GO:0006631),Biological Process: fatty acid beta-oxidation (GO:0006635),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: peroxisome (GO:0005777),Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995),Molecular Function: acyl-CoA oxidase activity (GO:0003997),Molecular Function: oxidoreductase activity%2C acting on the CH-CH group of donors (GO:0016627),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Acyl-CoA oxidase%2C C-terminal (IPR002655),Acyl-CoA oxidase/dehydrogenase%2C type 1 (IPR006090),Acyl-CoA oxidase/dehydrogenase%2C central domain (IPR006091),Acyl-CoA dehydrogenase/oxidase C-terminal (IPR009075),Acyl-CoA dehydrogenase/oxidase (IPR009100),Acyl-CoA oxidase (IPR012258);NIAS_FLcDNA=J013093A09;Oryzabase=22012;Expression=AK066934;TENOR=Os06t0354500-01;KEGG=Os06t0354500-01 (EC:1.3.3.6)
Chr06	irgsp1_rep	five_prime_UTR	14512885	14512950	.	-	.	Parent=Os06t0354500-01
Chr06	irgsp1_rep	CDS	14512391	14512884	.	-	0	Parent=Os06t0354500-01
Chr06	irgsp1_rep	CDS	14508877	14508994	.	-	1	Parent=Os06t0354500-01
Chr06	irgsp1_rep	CDS	14508677	14508784	.	-	0	Parent=Os06t0354500-01
Chr06	irgsp1_rep	CDS	14508416	14508588	.	-	0	Parent=Os06t0354500-01
Chr06	irgsp1_rep	CDS	14508243	14508342	.	-	1	Parent=Os06t0354500-01
Chr06	irgsp1_rep	CDS	14508057	14508131	.	-	0	Parent=Os06t0354500-01
Chr06	irgsp1_rep	CDS	14506401	14506531	.	-	0	Parent=Os06t0354500-01
Chr06	irgsp1_rep	CDS	14505946	14506081	.	-	1	Parent=Os06t0354500-01
Chr06	irgsp1_rep	CDS	14505374	14505493	.	-	0	Parent=Os06t0354500-01
Chr06	irgsp1_rep	CDS	14505141	14505287	.	-	0	Parent=Os06t0354500-01
Chr06	irgsp1_rep	CDS	14504950	14505054	.	-	0	Parent=Os06t0354500-01
Chr06	irgsp1_rep	CDS	14504776	14504877	.	-	0	Parent=Os06t0354500-01
Chr06	irgsp1_rep	CDS	14504398	14504646	.	-	0	Parent=Os06t0354500-01
Chr06	irgsp1_rep	three_prime_UTR	14504152	14504397	.	-	.	Parent=Os06t0354500-01
Chr06	irgsp1_rep	mRNA	14515726	14516449	.	+	.	ID=Os06t0354600-01;Name=Os06t0354600-01;Locus_id=Os06g0354600;Note=Conserved hypothetical protein.;Transcript_evidence=AK242440 (DDBJ%2C Best hit);ORF_evidence=NP_001173361.1 (RefSeq);NIAS_FLcDNA=J080094D20;TENOR=Os06t0354600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	14515726	14516221	.	+	.	Parent=Os06t0354600-01
Chr06	irgsp1_rep	CDS	14516222	14516398	.	+	0	Parent=Os06t0354600-01
Chr06	irgsp1_rep	three_prime_UTR	14516399	14516449	.	+	.	Parent=Os06t0354600-01
Chr06	irgsp1_rep	mRNA	14527016	14531805	.	+	.	ID=Os06t0354700-01;Name=Os06t0354700-01;Locus_id=Os06g0354700;RAP-DB Gene Symbol Synonym(s)=NYC3%2C nyc3;RAP-DB Gene Name Synonym(s)=NON-YELLOW COLORING 3;CGSNL Gene Symbol=NYC3;CGSNL Gene Name=NON-YELLOW COLORING 3;Oryzabase Gene Symbol Synonym(s)=nyc3%2C OsNYC3%2C PPH;Oryzabase Gene Name Synonym(s)=pheophytinase;Note=Alpha/beta hydrolase-fold family protein%2C Chlorophyll degradation during senescence;Transcript_evidence=AB476298 (Genbank);ORF_evidence=Q69XR3 (UniProt);NIAS_FLcDNA=J013075L23;Manual Curation=September 28%2C 2009;Literature_PMID=19453447;Oryzabase=8682;Expression=AK066777;TENOR=Os06t0354700-01;KEGG=Os06t0354700-01
Chr06	irgsp1_rep	five_prime_UTR	14527016	14527097	.	+	.	Parent=Os06t0354700-01
Chr06	irgsp1_rep	five_prime_UTR	14527443	14527470	.	+	.	Parent=Os06t0354700-01
Chr06	irgsp1_rep	CDS	14527471	14528121	.	+	0	Parent=Os06t0354700-01
Chr06	irgsp1_rep	CDS	14528550	14528776	.	+	0	Parent=Os06t0354700-01
Chr06	irgsp1_rep	CDS	14529324	14529515	.	+	1	Parent=Os06t0354700-01
Chr06	irgsp1_rep	CDS	14529597	14529753	.	+	1	Parent=Os06t0354700-01
Chr06	irgsp1_rep	CDS	14531063	14531296	.	+	0	Parent=Os06t0354700-01
Chr06	irgsp1_rep	three_prime_UTR	14531297	14531805	.	+	.	Parent=Os06t0354700-01
Chr06	irgsp1_rep	mRNA	14527034	14530925	.	+	.	ID=Os06t0354700-02;Name=Os06t0354700-02;Locus_id=Os06g0354700;CGSNL Gene Symbol=NYC3;CGSNL Gene Name=NON-YELLOW COLORING 3;Oryzabase Gene Symbol Synonym(s)=nyc3%2C OsNYC3%2C PPH;Oryzabase Gene Name Synonym(s)=pheophytinase;Note=Similar to Hydrolase%2C alpha/beta fold family protein.;Transcript_evidence=AK068937 (DDBJ%2C Best hit);ORF_evidence=B6TI01 (UniProt);NIAS_FLcDNA=J023003K12;Oryzabase=8682;Expression=AK068937;TENOR=Os06t0354700-02;KEGG=Os06t0354700-02
Chr06	irgsp1_rep	five_prime_UTR	14527034	14527097	.	+	.	Parent=Os06t0354700-02
Chr06	irgsp1_rep	five_prime_UTR	14527443	14527470	.	+	.	Parent=Os06t0354700-02
Chr06	irgsp1_rep	CDS	14527471	14528121	.	+	0	Parent=Os06t0354700-02
Chr06	irgsp1_rep	CDS	14528550	14528776	.	+	0	Parent=Os06t0354700-02
Chr06	irgsp1_rep	CDS	14529324	14529515	.	+	1	Parent=Os06t0354700-02
Chr06	irgsp1_rep	CDS	14529597	14529753	.	+	1	Parent=Os06t0354700-02
Chr06	irgsp1_rep	CDS	14530416	14530469	.	+	0	Parent=Os06t0354700-02
Chr06	irgsp1_rep	three_prime_UTR	14530470	14530925	.	+	.	Parent=Os06t0354700-02
Chr06	irgsp1_rep	mRNA	14531186	14531580	.	+	.	ID=Os06t0354700-03;Name=Os06t0354700-03;Locus_id=Os06g0354700;CGSNL Gene Symbol=NYC3;CGSNL Gene Name=NON-YELLOW COLORING 3;Oryzabase Gene Symbol Synonym(s)=nyc3%2C OsNYC3%2C PPH;Oryzabase Gene Name Synonym(s)=pheophytinase;Note=Similar to Hydrolase%2C alpha/beta fold family protein.;Transcript_evidence=AK062125 (DDBJ%2C Best hit);ORF_evidence=B6TI01 (UniProt);NIAS_FLcDNA=001-045-D07;Oryzabase=8682;Expression=AK062125;TENOR=Os06t0354700-03;KEGG=Os06t0354700-03
Chr06	irgsp1_rep	CDS	14531186	14531296	.	+	0	Parent=Os06t0354700-03
Chr06	irgsp1_rep	three_prime_UTR	14531297	14531580	.	+	.	Parent=Os06t0354700-03
Chr06	irgsp1_rep	mRNA	14571501	14575872	.	+	.	ID=Os06t0355150-00;Name=Os06t0355150-00;Locus_id=Os06g0355150;Note=Similar to ATSAC1 (suppressor of actin 1)%3B phosphatidylinositol-4%2C5-bisphosphate 5-phosphatase.;Transcript_evidence=EU973116 (DDBJ);ORF_evidence=NP_173676.2 (RefSeq);GO=Molecular Function: phosphoric ester hydrolase activity (GO:0042578);InterPro=Synaptojanin%2C N-terminal (IPR002013);TENOR=Os06t0355150-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	14571501	14571507	.	+	.	Parent=Os06t0355150-00
Chr06	irgsp1_rep	CDS	14571508	14571744	.	+	0	Parent=Os06t0355150-00
Chr06	irgsp1_rep	CDS	14572474	14572550	.	+	0	Parent=Os06t0355150-00
Chr06	irgsp1_rep	CDS	14573010	14573197	.	+	1	Parent=Os06t0355150-00
Chr06	irgsp1_rep	CDS	14573479	14573576	.	+	2	Parent=Os06t0355150-00
Chr06	irgsp1_rep	CDS	14573836	14574012	.	+	0	Parent=Os06t0355150-00
Chr06	irgsp1_rep	three_prime_UTR	14574013	14574156	.	+	.	Parent=Os06t0355150-00
Chr06	irgsp1_rep	three_prime_UTR	14575559	14575872	.	+	.	Parent=Os06t0355150-00
Chr06	irgsp1_rep	mRNA	14577762	14580200	.	+	.	ID=Os06t0355300-01;Name=Os06t0355300-01;Locus_id=Os06g0355300;CGSNL Gene Symbol=IAA22;Oryzabase Gene Symbol Synonym(s)=OsIAA22;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 22%2C INDOLE-3-ACETIC ACID INDUCIBLE 22;Note=Similar to Auxin-responsive protein IAA22.;Transcript_evidence=AK288467 (DDBJ%2C Best hit);ORF_evidence=Q69TU6 (UniProt);NIAS_FLcDNA=J090036N10;Oryzabase=10910;TENOR=Os06t0355300-01;KEGG=Os06t0355300-01
Chr06	irgsp1_rep	five_prime_UTR	14577762	14578431	.	+	.	Parent=Os06t0355300-01
Chr06	irgsp1_rep	CDS	14578432	14578686	.	+	0	Parent=Os06t0355300-01
Chr06	irgsp1_rep	three_prime_UTR	14578687	14580200	.	+	.	Parent=Os06t0355300-01
Chr06	irgsp1_rep	mRNA	14584596	14590175	.	+	.	ID=Os06t0355500-01;Name=Os06t0355500-01;Locus_id=Os06g0355500;Note=Bromodomain containing protein.;Transcript_evidence=AK065914 (DDBJ%2C Best hit);ORF_evidence=NP_001060812.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Bromodomain (IPR001487),Bromodomain%2C conserved site (IPR018359);NIAS_FLcDNA=J013044H02;Expression=AK065914;TENOR=Os06t0355500-01;KEGG=Os06t0355500-01
Chr06	irgsp1_rep	five_prime_UTR	14584596	14585039	.	+	.	Parent=Os06t0355500-01
Chr06	irgsp1_rep	five_prime_UTR	14585214	14585267	.	+	.	Parent=Os06t0355500-01
Chr06	irgsp1_rep	CDS	14585268	14586002	.	+	0	Parent=Os06t0355500-01
Chr06	irgsp1_rep	CDS	14586119	14586196	.	+	0	Parent=Os06t0355500-01
Chr06	irgsp1_rep	CDS	14586810	14587047	.	+	0	Parent=Os06t0355500-01
Chr06	irgsp1_rep	CDS	14587672	14587747	.	+	2	Parent=Os06t0355500-01
Chr06	irgsp1_rep	CDS	14588358	14588367	.	+	1	Parent=Os06t0355500-01
Chr06	irgsp1_rep	three_prime_UTR	14588368	14588499	.	+	.	Parent=Os06t0355500-01
Chr06	irgsp1_rep	three_prime_UTR	14588973	14589266	.	+	.	Parent=Os06t0355500-01
Chr06	irgsp1_rep	three_prime_UTR	14589689	14590175	.	+	.	Parent=Os06t0355500-01
Chr06	irgsp1_rep	mRNA	14598344	14599242	.	-	.	ID=Os06t0355701-00;Name=Os06t0355701-00;Locus_id=Os06g0355701;Note=Hypothetical conserved gene.;Transcript_evidence=CT831028 (DDBJ%2C Secondary hit);ORF_evidence=Q69TU3 (UniProt);TENOR=Os06t0355701-00;KEGG=Os06t0355701-00
Chr06	irgsp1_rep	five_prime_UTR	14598981	14599242	.	-	.	Parent=Os06t0355701-00
Chr06	irgsp1_rep	CDS	14598974	14598980	.	-	0	Parent=Os06t0355701-00
Chr06	irgsp1_rep	CDS	14598470	14598741	.	-	2	Parent=Os06t0355701-00
Chr06	irgsp1_rep	three_prime_UTR	14598344	14598469	.	-	.	Parent=Os06t0355701-00
Chr06	irgsp1_rep	mRNA	14602718	14605945	.	-	.	ID=Os06t0355800-01;Name=Os06t0355800-01;Locus_id=Os06g0355800;Note=Hypothetical protein.;Transcript_evidence=AK103091 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033118J09;Expression=AK103091;TENOR=Os06t0355800-01;KEGG=Os06t0355800-01
Chr06	irgsp1_rep	five_prime_UTR	14605506	14605945	.	-	.	Parent=Os06t0355800-01
Chr06	irgsp1_rep	five_prime_UTR	14605019	14605103	.	-	.	Parent=Os06t0355800-01
Chr06	irgsp1_rep	five_prime_UTR	14604856	14604907	.	-	.	Parent=Os06t0355800-01
Chr06	irgsp1_rep	five_prime_UTR	14604735	14604741	.	-	.	Parent=Os06t0355800-01
Chr06	irgsp1_rep	CDS	14604449	14604734	.	-	0	Parent=Os06t0355800-01
Chr06	irgsp1_rep	CDS	14603076	14603131	.	-	2	Parent=Os06t0355800-01
Chr06	irgsp1_rep	CDS	14602795	14602887	.	-	0	Parent=Os06t0355800-01
Chr06	irgsp1_rep	three_prime_UTR	14602718	14602794	.	-	.	Parent=Os06t0355800-01
Chr06	irgsp1_rep	mRNA	14646987	14648089	.	-	.	ID=Os06t0356800-01;Name=Os06t0356800-01;Locus_id=Os06g0356800;Note=Similar to Xylanase inhibitor protein I precursor.;Transcript_evidence=AK288061 (DDBJ%2C Best hit),AK241892 (DDBJ%2C Best hit);ORF_evidence=Q4W6G2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 18%2C catalytic domain (IPR001223),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J075154C23,J075005N23;TENOR=Os06t0356800-01;KEGG=Os06t0356800-01
Chr06	irgsp1_rep	five_prime_UTR	14648047	14648089	.	-	.	Parent=Os06t0356800-01
Chr06	irgsp1_rep	CDS	14647300	14648046	.	-	0	Parent=Os06t0356800-01
Chr06	irgsp1_rep	three_prime_UTR	14646987	14647299	.	-	.	Parent=Os06t0356800-01
Chr06	irgsp1_rep	mRNA	14654751	14656145	.	+	.	ID=Os06t0357000-01;Name=Os06t0357000-01;Locus_id=Os06g0357000;Note=Protein of unknown function DUF1409 domain containing protein.;Transcript_evidence=AK288259 (DDBJ%2C Best hit);ORF_evidence=C8TFB2 (UniProt);InterPro=Domain of unknown function DUF1409 (IPR010811);NIAS_FLcDNA=J090015O20;TENOR=Os06t0357000-01;KEGG=Os06t0357000-01
Chr06	irgsp1_rep	five_prime_UTR	14654751	14654751	.	+	.	Parent=Os06t0357000-01
Chr06	irgsp1_rep	CDS	14654752	14655261	.	+	0	Parent=Os06t0357000-01
Chr06	irgsp1_rep	three_prime_UTR	14655262	14656145	.	+	.	Parent=Os06t0357000-01
Chr06	irgsp1_rep	mRNA	14770312	14773944	.	+	.	ID=Os06t0358800-01;Name=Os06t0358800-01;Locus_id=Os06g0358800;Note=Ribonuclease III domain containing protein.;Transcript_evidence=AK107404 (DDBJ%2C Best hit);ORF_evidence=B6TB30 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Cellular Component: intracellular (GO:0005622),Molecular Function: RNA binding (GO:0003723),Molecular Function: double-stranded RNA binding (GO:0003725),Molecular Function: ribonuclease III activity (GO:0004525);InterPro=Ribonuclease III (IPR000999),Double-stranded RNA-binding (IPR001159),Double-stranded RNA-binding-like (IPR014720);NIAS_FLcDNA=002-127-E01;Expression=AK107404;TENOR=Os06t0358800-01;KEGG=Os06t0358800-01 (EC:3.1.26.-)
Chr06	irgsp1_rep	five_prime_UTR	14770312	14770387	.	+	.	Parent=Os06t0358800-01
Chr06	irgsp1_rep	CDS	14770388	14770813	.	+	0	Parent=Os06t0358800-01
Chr06	irgsp1_rep	CDS	14772949	14773095	.	+	0	Parent=Os06t0358800-01
Chr06	irgsp1_rep	CDS	14773179	14773505	.	+	0	Parent=Os06t0358800-01
Chr06	irgsp1_rep	three_prime_UTR	14773506	14773944	.	+	.	Parent=Os06t0358800-01
Chr06	irgsp1_rep	mRNA	14809950	14815773	.	-	.	ID=Os06t0359400-01;Name=Os06t0359400-01;Locus_id=Os06g0359400;Note=Ribosomal protein L18a domain containing protein.;Transcript_evidence=AK243322 (DDBJ%2C Best hit);ORF_evidence=NP_001057602.2 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L18a (IPR021138);NIAS_FLcDNA=J100057A10;TENOR=Os06t0359400-01;KEGG=Os06t0359400-01
Chr06	irgsp1_rep	five_prime_UTR	14815722	14815773	.	-	.	Parent=Os06t0359400-01
Chr06	irgsp1_rep	CDS	14815547	14815721	.	-	0	Parent=Os06t0359400-01
Chr06	irgsp1_rep	CDS	14815321	14815441	.	-	2	Parent=Os06t0359400-01
Chr06	irgsp1_rep	CDS	14814619	14814733	.	-	1	Parent=Os06t0359400-01
Chr06	irgsp1_rep	CDS	14810219	14810278	.	-	0	Parent=Os06t0359400-01
Chr06	irgsp1_rep	three_prime_UTR	14809950	14810218	.	-	.	Parent=Os06t0359400-01
Chr06	irgsp1_rep	mRNA	14880277	14892856	.	-	.	ID=Os06t0360300-01;Name=Os06t0360300-01;Locus_id=Os06g0360300;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK105919 (DDBJ%2C Best hit);ORF_evidence=NP_001151520.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NmrA-like (IPR008030),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-205-A02;TENOR=Os06t0360300-01
Chr06	irgsp1_rep	five_prime_UTR	14892797	14892856	.	-	.	Parent=Os06t0360300-01
Chr06	irgsp1_rep	CDS	14892479	14892796	.	-	0	Parent=Os06t0360300-01
Chr06	irgsp1_rep	CDS	14892247	14892363	.	-	0	Parent=Os06t0360300-01
Chr06	irgsp1_rep	CDS	14881767	14882039	.	-	0	Parent=Os06t0360300-01
Chr06	irgsp1_rep	CDS	14880480	14880647	.	-	0	Parent=Os06t0360300-01
Chr06	irgsp1_rep	three_prime_UTR	14880277	14880479	.	-	.	Parent=Os06t0360300-01
Chr06	irgsp1_rep	mRNA	14880277	14892647	.	-	.	ID=Os06t0360300-02;Name=Os06t0360300-02;Locus_id=Os06g0360300;Note=Similar to 3-beta hydroxysteroid dehydrogenase/isomerase.;Transcript_evidence=AK070247 (DDBJ%2C Best hit);ORF_evidence=NP_001151520.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NmrA-like (IPR008030),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023042K01;TENOR=Os06t0360300-02
Chr06	irgsp1_rep	five_prime_UTR	14892647	14892647	.	-	.	Parent=Os06t0360300-02
Chr06	irgsp1_rep	CDS	14892479	14892646	.	-	0	Parent=Os06t0360300-02
Chr06	irgsp1_rep	CDS	14892247	14892363	.	-	0	Parent=Os06t0360300-02
Chr06	irgsp1_rep	CDS	14881767	14882039	.	-	0	Parent=Os06t0360300-02
Chr06	irgsp1_rep	CDS	14880480	14880647	.	-	0	Parent=Os06t0360300-02
Chr06	irgsp1_rep	three_prime_UTR	14880277	14880479	.	-	.	Parent=Os06t0360300-02
Chr06	irgsp1_rep	mRNA	14892181	14893612	.	+	.	ID=Os06t0360500-01;Name=Os06t0360500-01;Locus_id=Os06g0360500;Note=Hypothetical protein.;Transcript_evidence=AK109778 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-147-B10;Expression=AK109778;TENOR=Os06t0360500-01;KEGG=Os06t0360500-01
Chr06	irgsp1_rep	five_prime_UTR	14892181	14892346	.	+	.	Parent=Os06t0360500-01
Chr06	irgsp1_rep	CDS	14892347	14892799	.	+	0	Parent=Os06t0360500-01
Chr06	irgsp1_rep	three_prime_UTR	14892800	14893612	.	+	.	Parent=Os06t0360500-01
Chr06	irgsp1_rep	mRNA	14906423	14913391	.	-	.	ID=Os06t0360600-01;Name=Os06t0360600-01;Locus_id=Os06g0360600;Note=Similar to OSIGBa0104J13.3 protein.;Transcript_evidence=AK120346 (DDBJ%2C Best hit);ORF_evidence=Q01LM2 (UniProt);NIAS_FLcDNA=J013063M12;TENOR=Os06t0360600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	14912989	14913391	.	-	.	Parent=Os06t0360600-01
Chr06	irgsp1_rep	five_prime_UTR	14912672	14912714	.	-	.	Parent=Os06t0360600-01
Chr06	irgsp1_rep	five_prime_UTR	14912148	14912230	.	-	.	Parent=Os06t0360600-01
Chr06	irgsp1_rep	five_prime_UTR	14911976	14912043	.	-	.	Parent=Os06t0360600-01
Chr06	irgsp1_rep	five_prime_UTR	14911639	14911747	.	-	.	Parent=Os06t0360600-01
Chr06	irgsp1_rep	five_prime_UTR	14911476	14911526	.	-	.	Parent=Os06t0360600-01
Chr06	irgsp1_rep	five_prime_UTR	14910669	14910924	.	-	.	Parent=Os06t0360600-01
Chr06	irgsp1_rep	five_prime_UTR	14908423	14910495	.	-	.	Parent=Os06t0360600-01
Chr06	irgsp1_rep	CDS	14908190	14908422	.	-	0	Parent=Os06t0360600-01
Chr06	irgsp1_rep	CDS	14907755	14908113	.	-	1	Parent=Os06t0360600-01
Chr06	irgsp1_rep	CDS	14907507	14907676	.	-	2	Parent=Os06t0360600-01
Chr06	irgsp1_rep	three_prime_UTR	14907489	14907506	.	-	.	Parent=Os06t0360600-01
Chr06	irgsp1_rep	three_prime_UTR	14907225	14907414	.	-	.	Parent=Os06t0360600-01
Chr06	irgsp1_rep	three_prime_UTR	14907049	14907153	.	-	.	Parent=Os06t0360600-01
Chr06	irgsp1_rep	three_prime_UTR	14906423	14906975	.	-	.	Parent=Os06t0360600-01
Chr06	irgsp1_rep	mRNA	14895813	14913391	.	-	.	ID=Os06t0360600-02;Name=Os06t0360600-02;Locus_id=Os06g0360600;Note=Conserved hypothetical protein.;Transcript_evidence=AK119263 (DDBJ%2C Best hit);ORF_evidence=B9FT74 (UniProt);NIAS_FLcDNA=001-130-A03;TENOR=Os06t0360600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	14913094	14913391	.	-	.	Parent=Os06t0360600-02
Chr06	irgsp1_rep	CDS	14912989	14913093	.	-	0	Parent=Os06t0360600-02
Chr06	irgsp1_rep	CDS	14912672	14912714	.	-	0	Parent=Os06t0360600-02
Chr06	irgsp1_rep	CDS	14912151	14912230	.	-	2	Parent=Os06t0360600-02
Chr06	irgsp1_rep	three_prime_UTR	14912148	14912150	.	-	.	Parent=Os06t0360600-02
Chr06	irgsp1_rep	three_prime_UTR	14911976	14912043	.	-	.	Parent=Os06t0360600-02
Chr06	irgsp1_rep	three_prime_UTR	14911639	14911747	.	-	.	Parent=Os06t0360600-02
Chr06	irgsp1_rep	three_prime_UTR	14911476	14911526	.	-	.	Parent=Os06t0360600-02
Chr06	irgsp1_rep	three_prime_UTR	14898643	14898691	.	-	.	Parent=Os06t0360600-02
Chr06	irgsp1_rep	three_prime_UTR	14896540	14898539	.	-	.	Parent=Os06t0360600-02
Chr06	irgsp1_rep	three_prime_UTR	14895813	14896164	.	-	.	Parent=Os06t0360600-02
Chr06	irgsp1_rep	mRNA	14897467	14913362	.	-	.	ID=Os06t0360600-03;Name=Os06t0360600-03;Locus_id=Os06g0360600;Note=Hypothetical conserved gene.;Transcript_evidence=AK059997 (DDBJ%2C Best hit);ORF_evidence=B9FT74 (UniProt);NIAS_FLcDNA=006-301-F11;Expression=AK059997;TENOR=Os06t0360600-03;KEGG=Os06t0360600-03
Chr06	irgsp1_rep	five_prime_UTR	14913094	14913362	.	-	.	Parent=Os06t0360600-03
Chr06	irgsp1_rep	CDS	14912977	14913093	.	-	0	Parent=Os06t0360600-03
Chr06	irgsp1_rep	CDS	14912672	14912714	.	-	0	Parent=Os06t0360600-03
Chr06	irgsp1_rep	CDS	14912151	14912230	.	-	2	Parent=Os06t0360600-03
Chr06	irgsp1_rep	three_prime_UTR	14912148	14912150	.	-	.	Parent=Os06t0360600-03
Chr06	irgsp1_rep	three_prime_UTR	14911976	14912043	.	-	.	Parent=Os06t0360600-03
Chr06	irgsp1_rep	three_prime_UTR	14911639	14911747	.	-	.	Parent=Os06t0360600-03
Chr06	irgsp1_rep	three_prime_UTR	14911476	14911526	.	-	.	Parent=Os06t0360600-03
Chr06	irgsp1_rep	three_prime_UTR	14898643	14898691	.	-	.	Parent=Os06t0360600-03
Chr06	irgsp1_rep	three_prime_UTR	14898410	14898539	.	-	.	Parent=Os06t0360600-03
Chr06	irgsp1_rep	three_prime_UTR	14897467	14897629	.	-	.	Parent=Os06t0360600-03
Chr06	irgsp1_rep	mRNA	14952665	14958965	.	-	.	ID=Os06t0361500-02;Name=Os06t0361500-02;Locus_id=Os06g0361500;Note=Similar to cDNA clone:J013000C15%2C full insert sequence.;Transcript_evidence=AK120214 (DDBJ%2C Best hit);ORF_evidence=Q10IC0 (UniProt);NIAS_FLcDNA=J013040G08;Oryzabase=22535;TENOR=Os06t0361500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	14957390	14958965	.	-	.	Parent=Os06t0361500-02
Chr06	irgsp1_rep	CDS	14957102	14957389	.	-	0	Parent=Os06t0361500-02
Chr06	irgsp1_rep	three_prime_UTR	14952665	14957101	.	-	.	Parent=Os06t0361500-02
Chr06	irgsp1_rep	mRNA	14972170	14974683	.	-	.	ID=Os06t0361750-01;Name=Os06t0361750-01;Locus_id=Os06g0361750;Note=Conserved hypothetical protein.;Transcript_evidence=AK287806 (DDBJ%2C Best hit);ORF_evidence=B8ALQ1 (UniProt);NIAS_FLcDNA=J065178E19;TENOR=Os06t0361750-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	14974131	14974683	.	-	.	Parent=Os06t0361750-01
Chr06	irgsp1_rep	CDS	14973948	14974130	.	-	0	Parent=Os06t0361750-01
Chr06	irgsp1_rep	three_prime_UTR	14972170	14973947	.	-	.	Parent=Os06t0361750-01
Chr06	irgsp1_rep	mRNA	14993763	14994387	.	+	.	ID=Os06t0362100-01;Name=Os06t0362100-01;Locus_id=Os06g0362100;Note=Conserved hypothetical protein.;Transcript_evidence=AK121132 (DDBJ%2C Best hit);ORF_evidence=Q69Y32 (UniProt);NIAS_FLcDNA=J023075J24;TENOR=Os06t0362100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	14993763	14994158	.	+	0	Parent=Os06t0362100-01
Chr06	irgsp1_rep	three_prime_UTR	14994159	14994387	.	+	.	Parent=Os06t0362100-01
Chr06	irgsp1_rep	mRNA	15055818	15057688	.	-	.	ID=Os06t0363000-00;Name=Os06t0363000-00;Locus_id=Os06g0363000;Note=Non-protein coding transcript.;Transcript_evidence=CT837857 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os06t0363000-00
Chr06	irgsp1_rep	exon	15057510	15057688	.	-	.	Parent=Os06t0363000-00
Chr06	irgsp1_rep	exon	15056708	15056757	.	-	.	Parent=Os06t0363000-00
Chr06	irgsp1_rep	exon	15055818	15056066	.	-	.	Parent=Os06t0363000-00
Chr06	irgsp1_rep	mRNA	15189242	15197492	.	+	.	ID=Os06t0364500-01;Name=Os06t0364500-01;Locus_id=Os06g0364500;Note=Conserved hypothetical protein.;Transcript_evidence=AK107497 (DDBJ%2C Best hit);ORF_evidence=XP_002489169.1 (RefSeq);NIAS_FLcDNA=002-129-D09;Expression=AK107497;TENOR=Os06t0364500-01;KEGG=Os06t0364500-01
Chr06	irgsp1_rep	five_prime_UTR	15189242	15189333	.	+	.	Parent=Os06t0364500-01
Chr06	irgsp1_rep	CDS	15189334	15190147	.	+	0	Parent=Os06t0364500-01
Chr06	irgsp1_rep	CDS	15197016	15197060	.	+	2	Parent=Os06t0364500-01
Chr06	irgsp1_rep	CDS	15197176	15197300	.	+	2	Parent=Os06t0364500-01
Chr06	irgsp1_rep	three_prime_UTR	15197301	15197492	.	+	.	Parent=Os06t0364500-01
Chr06	irgsp1_rep	mRNA	15207468	15211100	.	-	.	ID=Os06t0364850-01;Name=Os06t0364850-01;Locus_id=Os06g0364850;Note=Hypothetical conserved gene.;Transcript_evidence=AK288566 (DDBJ%2C Best hit);ORF_evidence=Q68UQ7 (UniProt);InterPro=Domain of unknown function DUF1409 (IPR010811);NIAS_FLcDNA=J090047P14;TENOR=Os06t0364850-01;KEGG=Os06t0364850-01
Chr06	irgsp1_rep	five_prime_UTR	15209633	15211100	.	-	.	Parent=Os06t0364850-01
Chr06	irgsp1_rep	CDS	15209417	15209632	.	-	0	Parent=Os06t0364850-01
Chr06	irgsp1_rep	three_prime_UTR	15207468	15209416	.	-	.	Parent=Os06t0364850-01
Chr06	irgsp1_rep	mRNA	15235673	15238979	.	+	.	ID=Os06t0365200-01;Name=Os06t0365200-01;Locus_id=Os06g0365200;Note=Hypothetical protein.;Transcript_evidence=AK069849 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J023036J03;TENOR=Os06t0365200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	15235673	15235780	.	+	.	Parent=Os06t0365200-01
Chr06	irgsp1_rep	CDS	15235781	15236122	.	+	0	Parent=Os06t0365200-01
Chr06	irgsp1_rep	three_prime_UTR	15236123	15238979	.	+	.	Parent=Os06t0365200-01
Chr06	irgsp1_rep	mRNA	15251945	15256760	.	+	.	ID=Os06t0365450-00;Name=Os06t0365450-00;Locus_id=Os06g0365450;Note=Hypothetical conserved gene.;Transcript_evidence=AK241872 (DDBJ%2C Secondary hit);ORF_evidence=Q25AH9 (UniProt);TENOR=Os06t0365450-00;KEGG=Os06t0365450-00
Chr06	irgsp1_rep	five_prime_UTR	15251945	15252678	.	+	.	Parent=Os06t0365450-00
Chr06	irgsp1_rep	CDS	15252679	15252705	.	+	0	Parent=Os06t0365450-00
Chr06	irgsp1_rep	CDS	15255192	15255255	.	+	0	Parent=Os06t0365450-00
Chr06	irgsp1_rep	CDS	15256485	15256504	.	+	2	Parent=Os06t0365450-00
Chr06	irgsp1_rep	three_prime_UTR	15256505	15256760	.	+	.	Parent=Os06t0365450-00
Chr06	irgsp1_rep	mRNA	15253969	15254487	.	-	.	ID=Os06t0365700-01;Name=Os06t0365700-01;Locus_id=Os06g0365700;Note=Hypothetical gene.;Transcript_evidence=AK058208 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=001-010-B07;Expression=AK058208;TENOR=Os06t0365700-01;KEGG=Os06t0365700-01
Chr06	irgsp1_rep	five_prime_UTR	15254487	15254487	.	-	.	Parent=Os06t0365700-01
Chr06	irgsp1_rep	CDS	15254139	15254486	.	-	0	Parent=Os06t0365700-01
Chr06	irgsp1_rep	three_prime_UTR	15253969	15254138	.	-	.	Parent=Os06t0365700-01
Chr06	irgsp1_rep	mRNA	15335687	15365531	.	+	.	ID=Os06t0367100-01;Name=Os06t0367100-01;Locus_id=Os06g0367100;Note=Glycoside hydrolase%2C subgroup%2C catalytic core domain containing protein.;Transcript_evidence=AK066930 (DDBJ%2C Best hit);ORF_evidence=NP_001108121.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 13%2C N-terminal (IPR004193),Glycosyl hydrolase%2C family 13%2C catalytic domain (IPR006047),Alpha-amylase%2C C-terminal all beta (IPR006048),Glycosyl hydrolase%2C family 13%2C all-beta (IPR013780),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Immunoglobulin-like fold (IPR013783),Immunoglobulin E-set (IPR014756),Alpha amylase (IPR015902),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J013092B01;Expression=AK066930;TENOR=Os06t0367100-01;KEGG=Os06t0367100-01
Chr06	irgsp1_rep	five_prime_UTR	15335687	15335785	.	+	.	Parent=Os06t0367100-01
Chr06	irgsp1_rep	CDS	15335786	15336084	.	+	0	Parent=Os06t0367100-01
Chr06	irgsp1_rep	CDS	15336855	15336926	.	+	1	Parent=Os06t0367100-01
Chr06	irgsp1_rep	CDS	15337056	15337120	.	+	1	Parent=Os06t0367100-01
Chr06	irgsp1_rep	CDS	15339696	15340373	.	+	2	Parent=Os06t0367100-01
Chr06	irgsp1_rep	CDS	15340850	15341022	.	+	2	Parent=Os06t0367100-01
Chr06	irgsp1_rep	CDS	15341099	15341188	.	+	0	Parent=Os06t0367100-01
Chr06	irgsp1_rep	CDS	15342141	15342216	.	+	0	Parent=Os06t0367100-01
Chr06	irgsp1_rep	CDS	15342676	15342783	.	+	2	Parent=Os06t0367100-01
Chr06	irgsp1_rep	CDS	15349895	15349985	.	+	2	Parent=Os06t0367100-01
Chr06	irgsp1_rep	CDS	15350105	15350206	.	+	1	Parent=Os06t0367100-01
Chr06	irgsp1_rep	CDS	15350329	15350431	.	+	1	Parent=Os06t0367100-01
Chr06	irgsp1_rep	CDS	15350751	15350888	.	+	0	Parent=Os06t0367100-01
Chr06	irgsp1_rep	CDS	15351115	15351177	.	+	0	Parent=Os06t0367100-01
Chr06	irgsp1_rep	CDS	15352016	15352123	.	+	0	Parent=Os06t0367100-01
Chr06	irgsp1_rep	CDS	15353843	15353920	.	+	0	Parent=Os06t0367100-01
Chr06	irgsp1_rep	CDS	15354037	15354144	.	+	0	Parent=Os06t0367100-01
Chr06	irgsp1_rep	CDS	15355190	15355270	.	+	0	Parent=Os06t0367100-01
Chr06	irgsp1_rep	CDS	15362456	15362560	.	+	0	Parent=Os06t0367100-01
Chr06	irgsp1_rep	CDS	15363847	15363932	.	+	0	Parent=Os06t0367100-01
Chr06	irgsp1_rep	CDS	15364035	15364089	.	+	1	Parent=Os06t0367100-01
Chr06	irgsp1_rep	CDS	15364199	15364231	.	+	0	Parent=Os06t0367100-01
Chr06	irgsp1_rep	three_prime_UTR	15364232	15364347	.	+	.	Parent=Os06t0367100-01
Chr06	irgsp1_rep	three_prime_UTR	15365170	15365531	.	+	.	Parent=Os06t0367100-01
Chr06	irgsp1_rep	mRNA	15352073	15365477	.	+	.	ID=Os06t0367100-02;Name=Os06t0367100-02;Locus_id=Os06g0367100;Note=Similar to starch branching enzyme III.;Transcript_evidence=AK061965 (DDBJ%2C Best hit);ORF_evidence=NP_001108121.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: cation binding (GO:0043169);InterPro=Alpha-amylase%2C C-terminal all beta (IPR006048),Glycosyl hydrolase%2C family 13%2C all-beta (IPR013780),Alpha amylase (IPR015902);NIAS_FLcDNA=001-042-G10;Expression=AK061965;TENOR=Os06t0367100-02;KEGG=Os06t0367100-02 (EC:2.4.1.18)
Chr06	irgsp1_rep	CDS	15352073	15352123	.	+	0	Parent=Os06t0367100-02
Chr06	irgsp1_rep	CDS	15353843	15353920	.	+	0	Parent=Os06t0367100-02
Chr06	irgsp1_rep	CDS	15354037	15354144	.	+	0	Parent=Os06t0367100-02
Chr06	irgsp1_rep	CDS	15355190	15355270	.	+	0	Parent=Os06t0367100-02
Chr06	irgsp1_rep	CDS	15362456	15362560	.	+	0	Parent=Os06t0367100-02
Chr06	irgsp1_rep	CDS	15363847	15363932	.	+	0	Parent=Os06t0367100-02
Chr06	irgsp1_rep	CDS	15364035	15364089	.	+	1	Parent=Os06t0367100-02
Chr06	irgsp1_rep	CDS	15364199	15364231	.	+	0	Parent=Os06t0367100-02
Chr06	irgsp1_rep	three_prime_UTR	15364232	15364347	.	+	.	Parent=Os06t0367100-02
Chr06	irgsp1_rep	three_prime_UTR	15365170	15365477	.	+	.	Parent=Os06t0367100-02
Chr06	irgsp1_rep	mRNA	15379505	15384233	.	-	.	ID=Os06t0367500-01;Name=Os06t0367500-01;Locus_id=Os06g0367500;Note=Similar to B-cell receptor-associated protein 31-like containing protein.;Transcript_evidence=AK063619 (DDBJ%2C Best hit);ORF_evidence=B6TG43 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Cellular Component: endoplasmic reticulum (GO:0005783),Cellular Component: integral to membrane (GO:0016021);InterPro=B-cell receptor-associated 31-like (IPR008417);NIAS_FLcDNA=001-118-E03;TENOR=Os06t0367500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	15383951	15384233	.	-	0	Parent=Os06t0367500-01
Chr06	irgsp1_rep	CDS	15379906	15380291	.	-	2	Parent=Os06t0367500-01
Chr06	irgsp1_rep	three_prime_UTR	15379505	15379905	.	-	.	Parent=Os06t0367500-01
Chr06	irgsp1_rep	mRNA	15414831	15423582	.	-	.	ID=Os06t0367900-01;Name=Os06t0367900-01;Locus_id=Os06g0367900;Oryzabase Gene Symbol Synonym(s)=OsMPK20-3%2C MPK20-3%2C OsMAPK11%2C MAPK11;Oryzabase Gene Name Synonym(s)=MAP kinase 20-3;Note=Similar to Mitogen-activated protein kinase homologue.;Transcript_evidence=AK100081 (DDBJ%2C Best hit),AK066968 (DDBJ%2C Best hit);ORF_evidence=Q5VN19 (UniProt);NIAS_FLcDNA=J023002B11,J013091E02;Oryzabase=10680;TENOR=Os06t0367900-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	15423200	15423582	.	-	.	Parent=Os06t0367900-01
Chr06	irgsp1_rep	CDS	15423173	15423199	.	-	0	Parent=Os06t0367900-01
Chr06	irgsp1_rep	CDS	15419858	15420266	.	-	0	Parent=Os06t0367900-01
Chr06	irgsp1_rep	CDS	15419317	15419444	.	-	2	Parent=Os06t0367900-01
Chr06	irgsp1_rep	CDS	15418721	15418780	.	-	0	Parent=Os06t0367900-01
Chr06	irgsp1_rep	CDS	15417570	15417719	.	-	0	Parent=Os06t0367900-01
Chr06	irgsp1_rep	CDS	15417318	15417476	.	-	0	Parent=Os06t0367900-01
Chr06	irgsp1_rep	CDS	15416539	15416747	.	-	0	Parent=Os06t0367900-01
Chr06	irgsp1_rep	CDS	15416352	15416453	.	-	1	Parent=Os06t0367900-01
Chr06	irgsp1_rep	CDS	15415557	15415684	.	-	1	Parent=Os06t0367900-01
Chr06	irgsp1_rep	CDS	15415062	15415402	.	-	2	Parent=Os06t0367900-01
Chr06	irgsp1_rep	three_prime_UTR	15414831	15415061	.	-	.	Parent=Os06t0367900-01
Chr06	irgsp1_rep	mRNA	15414870	15423582	.	-	.	ID=Os06t0367900-02;Name=Os06t0367900-02;Locus_id=Os06g0367900;Oryzabase Gene Symbol Synonym(s)=OsMPK20-3%2C MPK20-3%2C OsMAPK11%2C MAPK11;Oryzabase Gene Name Synonym(s)=MAP kinase 20-3;Note=Similar to Isoform 2 of Mitogen-activated protein kinase 11.;Transcript_evidence=AK065641 (DDBJ%2C Best hit);ORF_evidence=Q5VN19-2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: MAP kinase activity (GO:0004707),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),MAP kinase%2C conserved site (IPR003527),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013035N17;Oryzabase=10680;Expression=AK065641;TENOR=Os06t0367900-02;KEGG=Os06t0367900-02 (EC:2.7.11.24)
Chr06	irgsp1_rep	five_prime_UTR	15423200	15423582	.	-	.	Parent=Os06t0367900-02
Chr06	irgsp1_rep	CDS	15423173	15423199	.	-	0	Parent=Os06t0367900-02
Chr06	irgsp1_rep	CDS	15419858	15420266	.	-	0	Parent=Os06t0367900-02
Chr06	irgsp1_rep	CDS	15419317	15419444	.	-	2	Parent=Os06t0367900-02
Chr06	irgsp1_rep	CDS	15418721	15418780	.	-	0	Parent=Os06t0367900-02
Chr06	irgsp1_rep	CDS	15417570	15417719	.	-	0	Parent=Os06t0367900-02
Chr06	irgsp1_rep	CDS	15417318	15417476	.	-	0	Parent=Os06t0367900-02
Chr06	irgsp1_rep	CDS	15416539	15416747	.	-	0	Parent=Os06t0367900-02
Chr06	irgsp1_rep	CDS	15416352	15416453	.	-	1	Parent=Os06t0367900-02
Chr06	irgsp1_rep	CDS	15415381	15415402	.	-	1	Parent=Os06t0367900-02
Chr06	irgsp1_rep	three_prime_UTR	15414870	15415380	.	-	.	Parent=Os06t0367900-02
Chr06	irgsp1_rep	mRNA	15415009	15423501	.	+	.	ID=Os06t0418151-00;Name=Os06t0418151-00;Locus_id=Os06g0418151;Note=Hypothetical protein.;Transcript_evidence=tplb0038e20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0418151-00
Chr06	irgsp1_rep	five_prime_UTR	15415009	15415412	.	+	.	Parent=Os06t0418151-00
Chr06	irgsp1_rep	five_prime_UTR	15416362	15416443	.	+	.	Parent=Os06t0418151-00
Chr06	irgsp1_rep	five_prime_UTR	15416523	15416746	.	+	.	Parent=Os06t0418151-00
Chr06	irgsp1_rep	five_prime_UTR	15417317	15417464	.	+	.	Parent=Os06t0418151-00
Chr06	irgsp1_rep	five_prime_UTR	15417561	15417712	.	+	.	Parent=Os06t0418151-00
Chr06	irgsp1_rep	five_prime_UTR	15418713	15418788	.	+	.	Parent=Os06t0418151-00
Chr06	irgsp1_rep	five_prime_UTR	15419327	15419430	.	+	.	Parent=Os06t0418151-00
Chr06	irgsp1_rep	five_prime_UTR	15419842	15420198	.	+	.	Parent=Os06t0418151-00
Chr06	irgsp1_rep	CDS	15420199	15420266	.	+	0	Parent=Os06t0418151-00
Chr06	irgsp1_rep	CDS	15423173	15423482	.	+	1	Parent=Os06t0418151-00
Chr06	irgsp1_rep	three_prime_UTR	15423483	15423501	.	+	.	Parent=Os06t0418151-00
Chr06	irgsp1_rep	mRNA	15498259	15499639	.	-	.	ID=Os06t0468400-01;Name=Os06t0468400-01;Locus_id=Os06g0468400;Note=Zinc finger%2C PHD-type domain containing protein.;Transcript_evidence=AK064100 (DDBJ%2C Best hit);ORF_evidence=A2YCU2 (UniProt);InterPro=Zinc finger%2C PHD-type%2C conserved site (IPR019786);NIAS_FLcDNA=002-101-A01;Expression=AK064100;TENOR=Os06t0468400-01;KEGG=Os06t0468400-01
Chr06	irgsp1_rep	five_prime_UTR	15499589	15499639	.	-	.	Parent=Os06t0468400-01
Chr06	irgsp1_rep	CDS	15498437	15499588	.	-	0	Parent=Os06t0468400-01
Chr06	irgsp1_rep	three_prime_UTR	15498259	15498436	.	-	.	Parent=Os06t0468400-01
Chr06	irgsp1_rep	mRNA	15578047	15582320	.	+	.	ID=Os06t0469800-00;Name=Os06t0469800-00;Locus_id=Os06g0469800;Note=Similar to H0124E07.4 protein.;Transcript_evidence=AK241872 (DDBJ%2C Secondary hit);ORF_evidence=Q25AH9 (UniProt);TENOR=Os06t0469800-00
Chr06	irgsp1_rep	five_prime_UTR	15578047	15578807	.	+	.	Parent=Os06t0469800-00
Chr06	irgsp1_rep	five_prime_UTR	15579525	15579588	.	+	.	Parent=Os06t0469800-00
Chr06	irgsp1_rep	five_prime_UTR	15582123	15582142	.	+	.	Parent=Os06t0469800-00
Chr06	irgsp1_rep	CDS	15582143	15582320	.	+	0	Parent=Os06t0469800-00
Chr06	irgsp1_rep	mRNA	15601705	15603783	.	+	.	ID=Os06t0470000-01;Name=Os06t0470000-01;Locus_id=Os06g0470000;Note=Glycosyltransferase AER61%2C uncharacterized domain containing protein.;Transcript_evidence=AK243642 (DDBJ%2C Best hit);ORF_evidence=NP_001149180.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyltransferase AER61%2C uncharacterised (IPR007657);NIAS_FLcDNA=J100088A21;Oryzabase=15264;TENOR=Os06t0470000-01;KEGG=Os06t0470000-01
Chr06	irgsp1_rep	five_prime_UTR	15601705	15601772	.	+	.	Parent=Os06t0470000-01
Chr06	irgsp1_rep	CDS	15601773	15601968	.	+	0	Parent=Os06t0470000-01
Chr06	irgsp1_rep	CDS	15602060	15602245	.	+	2	Parent=Os06t0470000-01
Chr06	irgsp1_rep	CDS	15602471	15603663	.	+	2	Parent=Os06t0470000-01
Chr06	irgsp1_rep	three_prime_UTR	15603664	15603783	.	+	.	Parent=Os06t0470000-01
Chr06	irgsp1_rep	mRNA	15601775	15603671	.	-	.	ID=Os06t0470075-00;Name=Os06t0470075-00;Locus_id=Os06g0470075;Note=Hypothetical protein.;Transcript_evidence=tplb0046e07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0470075-00
Chr06	irgsp1_rep	five_prime_UTR	15603670	15603671	.	-	.	Parent=Os06t0470075-00
Chr06	irgsp1_rep	CDS	15602845	15603669	.	-	0	Parent=Os06t0470075-00
Chr06	irgsp1_rep	three_prime_UTR	15602493	15602844	.	-	.	Parent=Os06t0470075-00
Chr06	irgsp1_rep	three_prime_UTR	15602067	15602330	.	-	.	Parent=Os06t0470075-00
Chr06	irgsp1_rep	three_prime_UTR	15601775	15602011	.	-	.	Parent=Os06t0470075-00
Chr06	irgsp1_rep	mRNA	15612239	15613211	.	+	.	ID=Os06t0470350-01;Name=Os06t0470350-01;Locus_id=Os06g0470350;Note=Hypothetical gene.;Transcript_evidence=AK242222 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J075173I21;TENOR=Os06t0470350-01;KEGG=Os06t0470350-01
Chr06	irgsp1_rep	five_prime_UTR	15612239	15612239	.	+	.	Parent=Os06t0470350-01
Chr06	irgsp1_rep	CDS	15612240	15612806	.	+	0	Parent=Os06t0470350-01
Chr06	irgsp1_rep	three_prime_UTR	15612807	15613211	.	+	.	Parent=Os06t0470350-01
Chr06	irgsp1_rep	mRNA	15622082	15624876	.	-	.	ID=Os06t0470500-00;Name=Os06t0470500-00;Locus_id=Os06g0470500;Note=Hypothetical conserved gene.;Transcript_evidence=CT841648 (DDBJ%2C Best hit);ORF_evidence=Q69XT5 (UniProt);TENOR=Os06t0470500-00;KEGG=Os06t0470500-00
Chr06	irgsp1_rep	five_prime_UTR	15624545	15624876	.	-	.	Parent=Os06t0470500-00
Chr06	irgsp1_rep	CDS	15624497	15624544	.	-	0	Parent=Os06t0470500-00
Chr06	irgsp1_rep	CDS	15624312	15624484	.	-	0	Parent=Os06t0470500-00
Chr06	irgsp1_rep	CDS	15623073	15623079	.	-	1	Parent=Os06t0470500-00
Chr06	irgsp1_rep	three_prime_UTR	15622839	15623072	.	-	.	Parent=Os06t0470500-00
Chr06	irgsp1_rep	three_prime_UTR	15622593	15622735	.	-	.	Parent=Os06t0470500-00
Chr06	irgsp1_rep	three_prime_UTR	15622082	15622484	.	-	.	Parent=Os06t0470500-00
Chr06	irgsp1_rep	mRNA	15648705	15659325	.	+	.	ID=Os06t0470800-01;Name=Os06t0470800-01;Locus_id=Os06g0470800;Note=Protein of unknown function DUF159 family protein.;Transcript_evidence=AK073255 (DDBJ%2C Best hit);ORF_evidence=B8B210 (UniProt);InterPro=Protein of unknown function DUF159 (IPR003738);NIAS_FLcDNA=J033021D15;Expression=AK073255;TENOR=Os06t0470800-01;KEGG=Os06t0470800-01
Chr06	irgsp1_rep	five_prime_UTR	15648705	15648915	.	+	.	Parent=Os06t0470800-01
Chr06	irgsp1_rep	five_prime_UTR	15649624	15649704	.	+	.	Parent=Os06t0470800-01
Chr06	irgsp1_rep	five_prime_UTR	15649785	15649792	.	+	.	Parent=Os06t0470800-01
Chr06	irgsp1_rep	CDS	15649793	15649941	.	+	0	Parent=Os06t0470800-01
Chr06	irgsp1_rep	CDS	15650023	15650206	.	+	1	Parent=Os06t0470800-01
Chr06	irgsp1_rep	CDS	15653515	15653600	.	+	0	Parent=Os06t0470800-01
Chr06	irgsp1_rep	CDS	15656218	15656335	.	+	1	Parent=Os06t0470800-01
Chr06	irgsp1_rep	three_prime_UTR	15656336	15659325	.	+	.	Parent=Os06t0470800-01
Chr06	irgsp1_rep	mRNA	15665967	15668824	.	+	.	ID=Os06t0471100-00;Name=Os06t0471100-00;Locus_id=Os06g0471100;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001057619.2 (RefSeq);TENOR=Os06t0471100-00
Chr06	irgsp1_rep	CDS	15665967	15666035	.	+	0	Parent=Os06t0471100-00
Chr06	irgsp1_rep	CDS	15667659	15667724	.	+	0	Parent=Os06t0471100-00
Chr06	irgsp1_rep	CDS	15668366	15668824	.	+	0	Parent=Os06t0471100-00
Chr06	irgsp1_rep	mRNA	15718546	15721230	.	-	.	ID=Os06t0472000-01;Name=Os06t0472000-01;Locus_id=Os06g0472000;CGSNL Gene Symbol=MSRB1;CGSNL Gene Name=METHIONINE SULFOXIDE REDUCTASE B1;Oryzabase Gene Symbol Synonym(s)=OsMSRB1%2C OsMSRB1.1%2C OsMSRB1.2%2C MSRB1.1;Oryzabase Gene Name Synonym(s)=Methionine sulfoxide reductase B1%2C Methionine sulfoxide reductase B1.1%2C peptide methionine sulfoxide reductase;Note=Methionine sulphoxide reductase B domain containing protein.;Transcript_evidence=AK063588 (DDBJ%2C Best hit);ORF_evidence=Q0DC89 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peptide-methionine-(S)-S-oxide reductase activity (GO:0008113);InterPro=Methionine sulphoxide reductase B (IPR002579),Mss4-like (IPR011057);NIAS_FLcDNA=001-118-A09;Oryzabase=20906;Expression=AK063588;TENOR=Os06t0472000-01;KEGG=Os06t0472000-01
Chr06	irgsp1_rep	CDS	15720996	15721230	.	-	0	Parent=Os06t0472000-01
Chr06	irgsp1_rep	CDS	15719993	15720101	.	-	2	Parent=Os06t0472000-01
Chr06	irgsp1_rep	CDS	15719840	15719905	.	-	1	Parent=Os06t0472000-01
Chr06	irgsp1_rep	CDS	15719501	15719698	.	-	1	Parent=Os06t0472000-01
Chr06	irgsp1_rep	CDS	15718763	15718793	.	-	1	Parent=Os06t0472000-01
Chr06	irgsp1_rep	three_prime_UTR	15718546	15718762	.	-	.	Parent=Os06t0472000-01
Chr06	irgsp1_rep	mRNA	15720555	15721209	.	-	.	ID=Os06t0472000-02;Name=Os06t0472000-02;Locus_id=Os06g0472000;CGSNL Gene Symbol=MSRB1;CGSNL Gene Name=METHIONINE SULFOXIDE REDUCTASE B1;Oryzabase Gene Symbol Synonym(s)=OsMSRB1%2C OsMSRB1.1%2C OsMSRB1.2%2C MSRB1.1;Oryzabase Gene Name Synonym(s)=Methionine sulfoxide reductase B1%2C Methionine sulfoxide reductase B1.1%2C peptide methionine sulfoxide reductase;Note=Hypothetical gene.;Transcript_evidence=AK111486 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-188-G06;Oryzabase=20906;Expression=AK111486;TENOR=Os06t0472000-02;KEGG=Os06t0472000-02
Chr06	irgsp1_rep	five_prime_UTR	15721209	15721209	.	-	.	Parent=Os06t0472000-02
Chr06	irgsp1_rep	CDS	15720885	15721208	.	-	0	Parent=Os06t0472000-02
Chr06	irgsp1_rep	three_prime_UTR	15720555	15720884	.	-	.	Parent=Os06t0472000-02
Chr06	irgsp1_rep	mRNA	15724706	15727419	.	+	.	ID=Os06t0472200-01;Name=Os06t0472200-01;Locus_id=Os06g0472200;Note=Similar to Isoflavone reductase.;Transcript_evidence=AK103043 (DDBJ%2C Best hit);ORF_evidence=B5M699 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NmrA-like (IPR008030),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033117F05;TENOR=Os06t0472200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	15724706	15724786	.	+	.	Parent=Os06t0472200-01
Chr06	irgsp1_rep	CDS	15724787	15725041	.	+	0	Parent=Os06t0472200-01
Chr06	irgsp1_rep	CDS	15725886	15726020	.	+	0	Parent=Os06t0472200-01
Chr06	irgsp1_rep	CDS	15726409	15726646	.	+	0	Parent=Os06t0472200-01
Chr06	irgsp1_rep	CDS	15726797	15727000	.	+	2	Parent=Os06t0472200-01
Chr06	irgsp1_rep	CDS	15727090	15727256	.	+	2	Parent=Os06t0472200-01
Chr06	irgsp1_rep	three_prime_UTR	15727257	15727419	.	+	.	Parent=Os06t0472200-01
Chr06	irgsp1_rep	mRNA	15724840	15727430	.	+	.	ID=Os06t0472200-02;Name=Os06t0472200-02;Locus_id=Os06g0472200;Note=Similar to Isoflavone reductase.;Transcript_evidence=AK059428 (DDBJ%2C Best hit);ORF_evidence=B5M699 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NmrA-like (IPR008030),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-027-E12;TENOR=Os06t0472200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	15724840	15724840	.	+	.	Parent=Os06t0472200-02
Chr06	irgsp1_rep	CDS	15724841	15725041	.	+	0	Parent=Os06t0472200-02
Chr06	irgsp1_rep	CDS	15725886	15726020	.	+	0	Parent=Os06t0472200-02
Chr06	irgsp1_rep	CDS	15726409	15726646	.	+	0	Parent=Os06t0472200-02
Chr06	irgsp1_rep	CDS	15726797	15727000	.	+	2	Parent=Os06t0472200-02
Chr06	irgsp1_rep	CDS	15727090	15727256	.	+	2	Parent=Os06t0472200-02
Chr06	irgsp1_rep	three_prime_UTR	15727257	15727430	.	+	.	Parent=Os06t0472200-02
Chr06	irgsp1_rep	mRNA	15733745	15737718	.	+	.	ID=Os06t0472300-01;Name=Os06t0472300-01;Locus_id=Os06g0472300;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK100558 (DDBJ%2C Best hit);ORF_evidence=B8B213 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J023104D09;TENOR=Os06t0472300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	15733745	15733912	.	+	.	Parent=Os06t0472300-01
Chr06	irgsp1_rep	CDS	15733913	15734509	.	+	0	Parent=Os06t0472300-01
Chr06	irgsp1_rep	CDS	15734649	15734684	.	+	0	Parent=Os06t0472300-01
Chr06	irgsp1_rep	three_prime_UTR	15734685	15736324	.	+	.	Parent=Os06t0472300-01
Chr06	irgsp1_rep	three_prime_UTR	15737349	15737718	.	+	.	Parent=Os06t0472300-01
Chr06	irgsp1_rep	mRNA	15733947	15735840	.	-	.	ID=Os06t0472350-00;Name=Os06t0472350-00;Locus_id=Os06g0472350;Note=Hypothetical protein.;Transcript_evidence=tplb0021n11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0472350-00
Chr06	irgsp1_rep	five_prime_UTR	15734837	15735840	.	-	.	Parent=Os06t0472350-00
Chr06	irgsp1_rep	CDS	15734582	15734836	.	-	0	Parent=Os06t0472350-00
Chr06	irgsp1_rep	CDS	15733947	15734386	.	-	0	Parent=Os06t0472350-00
Chr06	irgsp1_rep	mRNA	15738394	15744794	.	+	.	ID=Os06t0472400-01;Name=Os06t0472400-01;Locus_id=Os06g0472400;Note=Similar to Transcriptional regulator.;Transcript_evidence=AK067008 (DDBJ%2C Best hit);ORF_evidence=A7M6E8 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Uncharacterised protein family UPF0261 (IPR008322),TIM-barrel signal transduction protein%2C predicted (IPR009215),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J013093K13;Expression=AK067008;TENOR=Os06t0472400-01;KEGG=Os06t0472400-01
Chr06	irgsp1_rep	five_prime_UTR	15738394	15738486	.	+	.	Parent=Os06t0472400-01
Chr06	irgsp1_rep	CDS	15738487	15738588	.	+	0	Parent=Os06t0472400-01
Chr06	irgsp1_rep	CDS	15740362	15741012	.	+	0	Parent=Os06t0472400-01
Chr06	irgsp1_rep	CDS	15741125	15741331	.	+	0	Parent=Os06t0472400-01
Chr06	irgsp1_rep	CDS	15741843	15742058	.	+	0	Parent=Os06t0472400-01
Chr06	irgsp1_rep	CDS	15742137	15742359	.	+	0	Parent=Os06t0472400-01
Chr06	irgsp1_rep	CDS	15743197	15743444	.	+	2	Parent=Os06t0472400-01
Chr06	irgsp1_rep	CDS	15743530	15743708	.	+	0	Parent=Os06t0472400-01
Chr06	irgsp1_rep	CDS	15743948	15744201	.	+	1	Parent=Os06t0472400-01
Chr06	irgsp1_rep	CDS	15744382	15744533	.	+	2	Parent=Os06t0472400-01
Chr06	irgsp1_rep	three_prime_UTR	15744534	15744794	.	+	.	Parent=Os06t0472400-01
Chr06	irgsp1_rep	mRNA	15738445	15740842	.	+	.	ID=Os06t0472400-02;Name=Os06t0472400-02;Locus_id=Os06g0472400;Note=Similar to predicted protein.;Transcript_evidence=AK063108 (DDBJ%2C Best hit);ORF_evidence=A7M6E8 (UniProt);InterPro=Uncharacterised protein family UPF0261 (IPR008322);NIAS_FLcDNA=001-111-D04;TENOR=Os06t0472400-02
Chr06	irgsp1_rep	five_prime_UTR	15738445	15738486	.	+	.	Parent=Os06t0472400-02
Chr06	irgsp1_rep	CDS	15738487	15738588	.	+	0	Parent=Os06t0472400-02
Chr06	irgsp1_rep	CDS	15740362	15740842	.	+	0	Parent=Os06t0472400-02
Chr06	irgsp1_rep	mRNA	15755160	15759210	.	-	.	ID=Os06t0472600-01;Name=Os06t0472600-01;Locus_id=Os06g0472600;Note=Hypothetical conserved gene.;Transcript_evidence=AK288820 (DDBJ%2C Best hit);ORF_evidence=B8B214 (UniProt);NIAS_FLcDNA=J090073D04;TENOR=Os06t0472600-01;KEGG=Os06t0472600-01
Chr06	irgsp1_rep	five_prime_UTR	15757053	15759210	.	-	.	Parent=Os06t0472600-01
Chr06	irgsp1_rep	CDS	15757001	15757052	.	-	0	Parent=Os06t0472600-01
Chr06	irgsp1_rep	CDS	15756825	15756919	.	-	2	Parent=Os06t0472600-01
Chr06	irgsp1_rep	CDS	15755804	15756127	.	-	0	Parent=Os06t0472600-01
Chr06	irgsp1_rep	three_prime_UTR	15755160	15755803	.	-	.	Parent=Os06t0472600-01
Chr06	irgsp1_rep	mRNA	15761133	15765624	.	-	.	ID=Os06t0472700-01;Name=Os06t0472700-01;Locus_id=Os06g0472700;Note=Conserved hypothetical protein.;Transcript_evidence=AK103847 (DDBJ%2C Best hit);ORF_evidence=B9FT91 (UniProt);NIAS_FLcDNA=J033148J24;TENOR=Os06t0472700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	15765623	15765624	.	-	.	Parent=Os06t0472700-01
Chr06	irgsp1_rep	CDS	15765272	15765622	.	-	0	Parent=Os06t0472700-01
Chr06	irgsp1_rep	CDS	15763322	15763349	.	-	0	Parent=Os06t0472700-01
Chr06	irgsp1_rep	CDS	15763180	15763238	.	-	2	Parent=Os06t0472700-01
Chr06	irgsp1_rep	CDS	15763073	15763100	.	-	0	Parent=Os06t0472700-01
Chr06	irgsp1_rep	CDS	15761348	15762381	.	-	2	Parent=Os06t0472700-01
Chr06	irgsp1_rep	three_prime_UTR	15761133	15761347	.	-	.	Parent=Os06t0472700-01
Chr06	irgsp1_rep	mRNA	15761155	15765558	.	-	.	ID=Os06t0472700-02;Name=Os06t0472700-02;Locus_id=Os06g0472700;Note=Conserved hypothetical protein.;Transcript_evidence=AK059378 (DDBJ%2C Best hit);ORF_evidence=B9FT91 (UniProt);NIAS_FLcDNA=001-026-F11;TENOR=Os06t0472700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	15765557	15765558	.	-	.	Parent=Os06t0472700-02
Chr06	irgsp1_rep	CDS	15765272	15765556	.	-	0	Parent=Os06t0472700-02
Chr06	irgsp1_rep	CDS	15763322	15763349	.	-	0	Parent=Os06t0472700-02
Chr06	irgsp1_rep	CDS	15763180	15763238	.	-	2	Parent=Os06t0472700-02
Chr06	irgsp1_rep	CDS	15763073	15763100	.	-	0	Parent=Os06t0472700-02
Chr06	irgsp1_rep	CDS	15761348	15762381	.	-	2	Parent=Os06t0472700-02
Chr06	irgsp1_rep	three_prime_UTR	15761155	15761347	.	-	.	Parent=Os06t0472700-02
Chr06	irgsp1_rep	mRNA	15776959	15778474	.	+	.	ID=Os06t0472900-01;Name=Os06t0472900-01;Locus_id=Os06g0472900;Oryzabase Gene Symbol Synonym(s)=prx79;Oryzabase Gene Name Synonym(s)=class III peroxidase 79;Note=Haem peroxidase family protein.;Transcript_evidence=AK072945 (DDBJ%2C Best hit);ORF_evidence=Q5U1L4 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J023149C14;Oryzabase=14602;Expression=AK072945;TENOR=Os06t0472900-01;KEGG=Os06t0472900-01
Chr06	irgsp1_rep	five_prime_UTR	15776959	15776986	.	+	.	Parent=Os06t0472900-01
Chr06	irgsp1_rep	CDS	15776987	15777262	.	+	0	Parent=Os06t0472900-01
Chr06	irgsp1_rep	CDS	15777374	15778279	.	+	0	Parent=Os06t0472900-01
Chr06	irgsp1_rep	three_prime_UTR	15778280	15778474	.	+	.	Parent=Os06t0472900-01
Chr06	irgsp1_rep	mRNA	15777139	15777885	.	-	.	ID=Os06t0472950-00;Name=Os06t0472950-00;Locus_id=Os06g0472950;Note=Hypothetical protein.;Transcript_evidence=BT084813 (DDBJ);ORF_evidence=GeneMark;TENOR=Os06t0472950-00
Chr06	irgsp1_rep	five_prime_UTR	15777884	15777885	.	-	.	Parent=Os06t0472950-00
Chr06	irgsp1_rep	CDS	15777383	15777883	.	-	0	Parent=Os06t0472950-00
Chr06	irgsp1_rep	CDS	15777139	15777270	.	-	0	Parent=Os06t0472950-00
Chr06	irgsp1_rep	mRNA	15781397	15782702	.	-	.	ID=Os06t0473000-01;Name=Os06t0473000-01;Locus_id=Os06g0473000;CGSNL Gene Symbol=PHS1;CGSNL Gene Name=POOR HOMOLOGOUS SYNAPSIS 1;Oryzabase Gene Symbol Synonym(s)=OsPHS1;Oryzabase Gene Name Synonym(s)=Poor homologous synapsis 1;Note=Hypothetical conserved gene.;Transcript_evidence=AK241343 (DDBJ%2C Best hit);ORF_evidence=Q6W2J0 (UniProt);NIAS_FLcDNA=J065147F20;Oryzabase=22336;TENOR=Os06t0473000-01;KEGG=Os06t0473000-01
Chr06	irgsp1_rep	five_prime_UTR	15782701	15782702	.	-	.	Parent=Os06t0473000-01
Chr06	irgsp1_rep	CDS	15782580	15782700	.	-	0	Parent=Os06t0473000-01
Chr06	irgsp1_rep	CDS	15782428	15782477	.	-	2	Parent=Os06t0473000-01
Chr06	irgsp1_rep	CDS	15782320	15782347	.	-	0	Parent=Os06t0473000-01
Chr06	irgsp1_rep	CDS	15782162	15782235	.	-	2	Parent=Os06t0473000-01
Chr06	irgsp1_rep	CDS	15782032	15782059	.	-	0	Parent=Os06t0473000-01
Chr06	irgsp1_rep	CDS	15781719	15781777	.	-	2	Parent=Os06t0473000-01
Chr06	irgsp1_rep	three_prime_UTR	15781397	15781718	.	-	.	Parent=Os06t0473000-01
Chr06	irgsp1_rep	mRNA	15795209	15808206	.	-	.	ID=Os06t0473100-00;Name=Os06t0473100-00;Locus_id=Os06g0473100;Note=Similar to signal recognition particle receptor beta subunit.;Transcript_evidence=AK354588 (DDBJ);ORF_evidence=NP_001150140.1 (RefSeq);InterPro=Signal recognition particle receptor%2C beta subunit (IPR019009);TENOR=Os06t0473100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	15808075	15808206	.	-	.	Parent=Os06t0473100-00
Chr06	irgsp1_rep	five_prime_UTR	15797157	15797216	.	-	.	Parent=Os06t0473100-00
Chr06	irgsp1_rep	five_prime_UTR	15796518	15796532	.	-	.	Parent=Os06t0473100-00
Chr06	irgsp1_rep	CDS	15796446	15796517	.	-	0	Parent=Os06t0473100-00
Chr06	irgsp1_rep	CDS	15796170	15796318	.	-	0	Parent=Os06t0473100-00
Chr06	irgsp1_rep	CDS	15795827	15795958	.	-	1	Parent=Os06t0473100-00
Chr06	irgsp1_rep	CDS	15795376	15795565	.	-	1	Parent=Os06t0473100-00
Chr06	irgsp1_rep	three_prime_UTR	15795209	15795375	.	-	.	Parent=Os06t0473100-00
Chr06	irgsp1_rep	mRNA	15811009	15821885	.	-	.	ID=Os06t0473200-01;Name=Os06t0473200-01;Locus_id=Os06g0473200;CGSNL Gene Symbol=MKK3;CGSNL Gene Name=MITOGEN-ACTIVATED PROTEIN KINASE KINASE 3;Oryzabase Gene Symbol Synonym(s)=OsMKK3;Note=Similar to NPK2.;Transcript_evidence=AK119330 (DDBJ%2C Best hit);ORF_evidence=A3FK65 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-131-B06;Oryzabase=8830;Expression=AK119330;TENOR=Os06t0473200-01;KEGG=Os06t0473200-01 (EC:2.7.12.2)
Chr06	irgsp1_rep	five_prime_UTR	15821589	15821885	.	-	.	Parent=Os06t0473200-01
Chr06	irgsp1_rep	CDS	15821472	15821588	.	-	0	Parent=Os06t0473200-01
Chr06	irgsp1_rep	CDS	15819131	15819382	.	-	0	Parent=Os06t0473200-01
Chr06	irgsp1_rep	CDS	15817835	15818053	.	-	0	Parent=Os06t0473200-01
Chr06	irgsp1_rep	CDS	15817587	15817724	.	-	0	Parent=Os06t0473200-01
Chr06	irgsp1_rep	CDS	15816469	15816549	.	-	0	Parent=Os06t0473200-01
Chr06	irgsp1_rep	three_prime_UTR	15816398	15816468	.	-	.	Parent=Os06t0473200-01
Chr06	irgsp1_rep	three_prime_UTR	15815854	15815967	.	-	.	Parent=Os06t0473200-01
Chr06	irgsp1_rep	three_prime_UTR	15815478	15815585	.	-	.	Parent=Os06t0473200-01
Chr06	irgsp1_rep	three_prime_UTR	15812662	15812753	.	-	.	Parent=Os06t0473200-01
Chr06	irgsp1_rep	three_prime_UTR	15811009	15812016	.	-	.	Parent=Os06t0473200-01
Chr06	irgsp1_rep	mRNA	15811011	15821769	.	-	.	ID=Os06t0473200-02;Name=Os06t0473200-02;Locus_id=Os06g0473200;CGSNL Gene Symbol=MKK3;CGSNL Gene Name=MITOGEN-ACTIVATED PROTEIN KINASE KINASE 3;Oryzabase Gene Symbol Synonym(s)=OsMKK3;Note=Similar to Mitogen-activated protein kinase kinase 3.;Transcript_evidence=AK103805 (DDBJ%2C Best hit);ORF_evidence=A3FK65 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033146M21;Manual Curation=October 13%2C 2020;Oryzabase=8830;TENOR=Os06t0473200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	15821472	15821769	.	-	.	Parent=Os06t0473200-02
Chr06	irgsp1_rep	five_prime_UTR	15819242	15819347	.	-	.	Parent=Os06t0473200-02
Chr06	irgsp1_rep	CDS	15819131	15819241	.	-	0	Parent=Os06t0473200-02
Chr06	irgsp1_rep	CDS	15817835	15818053	.	-	0	Parent=Os06t0473200-02
Chr06	irgsp1_rep	CDS	15817587	15817724	.	-	0	Parent=Os06t0473200-02
Chr06	irgsp1_rep	CDS	15816398	15816565	.	-	0	Parent=Os06t0473200-02
Chr06	irgsp1_rep	CDS	15815854	15815967	.	-	0	Parent=Os06t0473200-02
Chr06	irgsp1_rep	CDS	15815478	15815585	.	-	0	Parent=Os06t0473200-02
Chr06	irgsp1_rep	CDS	15812649	15812753	.	-	0	Parent=Os06t0473200-02
Chr06	irgsp1_rep	three_prime_UTR	15811011	15812648	.	-	.	Parent=Os06t0473200-02
Chr06	irgsp1_rep	mRNA	15811009	15821884	.	-	.	ID=Os06t0473200-03;Name=Os06t0473200-03;Locus_id=Os06g0473200;RAP-DB Gene Symbol Synonym(s)=MKK3%2C OsMKK3;RAP-DB Gene Name Synonym(s)=Mitogen-activated protein kinase kinase 3;CGSNL Gene Symbol=MKK3;CGSNL Gene Name=MITOGEN-ACTIVATED PROTEIN KINASE KINASE 3;Oryzabase Gene Symbol Synonym(s)=OsMKK3;Note=Mitogen-activated protein kinase (MAPK) kinase%2C Regulation of seed dormancy%2C Disease resistance against X. oryzae;Transcript_evidence=Inferred from literature;ORF_evidence=A3FK65 (indica);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),NTF2-like domain superfamily (IPR032710),Protein kinase domain (IPR000719),Nuclear transport factor 2%2C eukaryote (IPR018222),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);Manual Curation=October 13%2C 2020;Literature_PMID=30671680,27897241,18619847;Oryzabase=8830
Chr06	irgsp1_rep	five_prime_UTR	15821589	15821884	.	-	.	Parent=Os06t0473200-03
Chr06	irgsp1_rep	CDS	15821472	15821588	.	-	0	Parent=Os06t0473200-03
Chr06	irgsp1_rep	CDS	15819131	15819382	.	-	0	Parent=Os06t0473200-03
Chr06	irgsp1_rep	CDS	15817835	15818053	.	-	0	Parent=Os06t0473200-03
Chr06	irgsp1_rep	CDS	15817587	15817724	.	-	0	Parent=Os06t0473200-03
Chr06	irgsp1_rep	CDS	15816398	15816565	.	-	0	Parent=Os06t0473200-03
Chr06	irgsp1_rep	CDS	15815854	15815967	.	-	0	Parent=Os06t0473200-03
Chr06	irgsp1_rep	CDS	15815478	15815585	.	-	0	Parent=Os06t0473200-03
Chr06	irgsp1_rep	CDS	15812662	15812753	.	-	0	Parent=Os06t0473200-03
Chr06	irgsp1_rep	CDS	15811653	15812016	.	-	1	Parent=Os06t0473200-03
Chr06	irgsp1_rep	three_prime_UTR	15811633	15811652	.	-	.	Parent=Os06t0473200-03
Chr06	irgsp1_rep	three_prime_UTR	15811009	15811460	.	-	.	Parent=Os06t0473200-03
Chr06	irgsp1_rep	mRNA	15840833	15841823	.	+	.	ID=Os06t0473700-01;Name=Os06t0473700-01;Locus_id=Os06g0473700;Note=Hypothetical gene.;Transcript_evidence=AK108049 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=002-137-G03;Expression=AK108049;TENOR=Os06t0473700-01;KEGG=Os06t0473700-01
Chr06	irgsp1_rep	five_prime_UTR	15840833	15840854	.	+	.	Parent=Os06t0473700-01
Chr06	irgsp1_rep	CDS	15840855	15840972	.	+	0	Parent=Os06t0473700-01
Chr06	irgsp1_rep	CDS	15841059	15841180	.	+	2	Parent=Os06t0473700-01
Chr06	irgsp1_rep	three_prime_UTR	15841181	15841355	.	+	.	Parent=Os06t0473700-01
Chr06	irgsp1_rep	three_prime_UTR	15841459	15841823	.	+	.	Parent=Os06t0473700-01
Chr06	irgsp1_rep	mRNA	15841909	15842484	.	+	.	ID=Os06t0473800-00;Name=Os06t0473800-00;Locus_id=Os06g0473800;Note=Oleosin family protein.;Transcript_evidence=EU952704 (DDBJ);ORF_evidence=NP_001057629.1 (RefSeq);GO=Cellular Component: monolayer-surrounded lipid storage body (GO:0012511),Cellular Component: integral to membrane (GO:0016021);InterPro=Oleosin (IPR000136);TENOR=Os06t0473800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	15841909	15841968	.	+	.	Parent=Os06t0473800-00
Chr06	irgsp1_rep	CDS	15841969	15842484	.	+	0	Parent=Os06t0473800-00
Chr06	irgsp1_rep	mRNA	15847690	15848563	.	+	.	ID=Os06t0474000-00;Name=Os06t0474000-00;Locus_id=Os06g0474000;Note=Conserved hypothetical protein.;Transcript_evidence=AK330461 (DDBJ);ORF_evidence=B8AEF1 (UniProt);TENOR=Os06t0474000-00
Chr06	irgsp1_rep	CDS	15847690	15848171	.	+	0	Parent=Os06t0474000-00
Chr06	irgsp1_rep	CDS	15848244	15848295	.	+	1	Parent=Os06t0474000-00
Chr06	irgsp1_rep	three_prime_UTR	15848296	15848399	.	+	.	Parent=Os06t0474000-00
Chr06	irgsp1_rep	three_prime_UTR	15848456	15848563	.	+	.	Parent=Os06t0474000-00
Chr06	irgsp1_rep	mRNA	15863304	15872695	.	-	.	ID=Os06t0474200-01;Name=Os06t0474200-01;Locus_id=Os06g0474200;RAP-DB Gene Symbol Synonym(s)=OsFIP;Oryzabase Gene Symbol Synonym(s)=SIP2%2C OsSIP2%2C OsFIP%2C FIP;Oryzabase Gene Name Synonym(s)=SKIP interacting protein 2%2C SKIPa-interacting protein 2%2C SKIPa-interacting protein 2;Note=Subunit of RNA N6-methyladenosine methyltransferase%2C Regulation of sporogenesis and embryo development%2C Male gametogenesis;Transcript_evidence=AK242820;ORF_evidence=B7F9Q5;GO=Biological Process: mRNA methylation (GO:0080009),Cellular Component: nucleus (GO:0005634);InterPro=WTAP/Mum2 family (IPR029732);NIAS_FLcDNA=J090063M02;Manual Curation=July 18%2C 2019;Literature_PMID=31116744;Oryzabase=9934;TENOR=Os06t0474200-01;KEGG=Os06t0474200-01
Chr06	irgsp1_rep	five_prime_UTR	15872545	15872695	.	-	.	Parent=Os06t0474200-01
Chr06	irgsp1_rep	CDS	15872448	15872544	.	-	0	Parent=Os06t0474200-01
Chr06	irgsp1_rep	CDS	15872255	15872316	.	-	2	Parent=Os06t0474200-01
Chr06	irgsp1_rep	CDS	15871907	15871974	.	-	0	Parent=Os06t0474200-01
Chr06	irgsp1_rep	CDS	15871775	15871811	.	-	1	Parent=Os06t0474200-01
Chr06	irgsp1_rep	CDS	15870688	15870775	.	-	0	Parent=Os06t0474200-01
Chr06	irgsp1_rep	CDS	15870547	15870611	.	-	2	Parent=Os06t0474200-01
Chr06	irgsp1_rep	CDS	15870386	15870463	.	-	0	Parent=Os06t0474200-01
Chr06	irgsp1_rep	CDS	15870093	15870140	.	-	0	Parent=Os06t0474200-01
Chr06	irgsp1_rep	CDS	15868676	15868729	.	-	0	Parent=Os06t0474200-01
Chr06	irgsp1_rep	CDS	15868047	15868208	.	-	0	Parent=Os06t0474200-01
Chr06	irgsp1_rep	CDS	15867562	15867631	.	-	0	Parent=Os06t0474200-01
Chr06	irgsp1_rep	CDS	15863933	15863988	.	-	2	Parent=Os06t0474200-01
Chr06	irgsp1_rep	CDS	15863419	15863592	.	-	0	Parent=Os06t0474200-01
Chr06	irgsp1_rep	three_prime_UTR	15863304	15863418	.	-	.	Parent=Os06t0474200-01
Chr06	irgsp1_rep	mRNA	15877891	15879564	.	+	.	ID=Os06t0474300-01;Name=Os06t0474300-01;Locus_id=Os06g0474300;Note=Methyltransferase type 11 domain containing protein.;Transcript_evidence=AK103398 (DDBJ%2C Best hit),AK101624 (DDBJ%2C Best hit);ORF_evidence=A2YCX0 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Protein of unknown function DUF248%2C methyltransferase putative (IPR004159);NIAS_FLcDNA=J033127N14,J033052M05;Expression=AK103398;TENOR=Os06t0474300-01;KEGG=Os06t0474300-01
Chr06	irgsp1_rep	five_prime_UTR	15877891	15877968	.	+	.	Parent=Os06t0474300-01
Chr06	irgsp1_rep	CDS	15877969	15879411	.	+	0	Parent=Os06t0474300-01
Chr06	irgsp1_rep	three_prime_UTR	15879412	15879564	.	+	.	Parent=Os06t0474300-01
Chr06	irgsp1_rep	mRNA	15891396	15895670	.	-	.	ID=Os06t0474500-01;Name=Os06t0474500-01;Locus_id=Os06g0474500;Note=Protein of unknown function DUF239%2C plant domain containing protein.;Transcript_evidence=AK073288 (DDBJ%2C Best hit);ORF_evidence=NP_001151558.1 (RefSeq);InterPro=Glucoamylase%2C putatuve (IPR004314);NIAS_FLcDNA=J033028L24;Expression=AK073288;TENOR=Os06t0474500-01;KEGG=Os06t0474500-01
Chr06	irgsp1_rep	five_prime_UTR	15895371	15895670	.	-	.	Parent=Os06t0474500-01
Chr06	irgsp1_rep	CDS	15895140	15895370	.	-	0	Parent=Os06t0474500-01
Chr06	irgsp1_rep	CDS	15894955	15895041	.	-	0	Parent=Os06t0474500-01
Chr06	irgsp1_rep	CDS	15894623	15894865	.	-	0	Parent=Os06t0474500-01
Chr06	irgsp1_rep	CDS	15892737	15892901	.	-	0	Parent=Os06t0474500-01
Chr06	irgsp1_rep	CDS	15892570	15892623	.	-	0	Parent=Os06t0474500-01
Chr06	irgsp1_rep	CDS	15892338	15892484	.	-	0	Parent=Os06t0474500-01
Chr06	irgsp1_rep	CDS	15891639	15892016	.	-	0	Parent=Os06t0474500-01
Chr06	irgsp1_rep	three_prime_UTR	15891396	15891638	.	-	.	Parent=Os06t0474500-01
Chr06	irgsp1_rep	mRNA	15891370	15895564	.	-	.	ID=Os06t0474500-02;Name=Os06t0474500-02;Locus_id=Os06g0474500;Note=Protein of unknown function DUF239%2C plant domain containing protein.;Transcript_evidence=AK104980 (DDBJ%2C Best hit);ORF_evidence=NP_001151558.1 (RefSeq);InterPro=Glucoamylase%2C putatuve (IPR004314);NIAS_FLcDNA=001-125-D09;Expression=AK104980;TENOR=Os06t0474500-02;KEGG=Os06t0474500-02
Chr06	irgsp1_rep	five_prime_UTR	15895371	15895564	.	-	.	Parent=Os06t0474500-02
Chr06	irgsp1_rep	CDS	15895140	15895370	.	-	0	Parent=Os06t0474500-02
Chr06	irgsp1_rep	CDS	15894955	15895041	.	-	0	Parent=Os06t0474500-02
Chr06	irgsp1_rep	CDS	15894623	15894865	.	-	0	Parent=Os06t0474500-02
Chr06	irgsp1_rep	CDS	15892737	15892901	.	-	0	Parent=Os06t0474500-02
Chr06	irgsp1_rep	CDS	15892570	15892623	.	-	0	Parent=Os06t0474500-02
Chr06	irgsp1_rep	CDS	15892338	15892484	.	-	0	Parent=Os06t0474500-02
Chr06	irgsp1_rep	CDS	15891639	15892016	.	-	0	Parent=Os06t0474500-02
Chr06	irgsp1_rep	three_prime_UTR	15891370	15891638	.	-	.	Parent=Os06t0474500-02
Chr06	irgsp1_rep	mRNA	15905914	15906632	.	-	.	ID=Os06t0474600-00;Name=Os06t0474600-00;Locus_id=Os06g0474600;Note=Hypothetical conserved gene.;Transcript_evidence=CU405578 (DDBJ%2C Secondary hit);ORF_evidence=A3BBS2 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase C48%2C SUMO/Sentrin/Ubl1 (IPR003653);TENOR=Os06t0474600-00;KEGG=Os06t0474600-00
Chr06	irgsp1_rep	five_prime_UTR	15906625	15906632	.	-	.	Parent=Os06t0474600-00
Chr06	irgsp1_rep	CDS	15906322	15906624	.	-	0	Parent=Os06t0474600-00
Chr06	irgsp1_rep	CDS	15906022	15906228	.	-	0	Parent=Os06t0474600-00
Chr06	irgsp1_rep	three_prime_UTR	15905914	15906021	.	-	.	Parent=Os06t0474600-00
Chr06	irgsp1_rep	mRNA	15915521	15918802	.	-	.	ID=Os06t0474800-01;Name=Os06t0474800-01;Locus_id=Os06g0474800;Note=Similar to 3Fe-4S ferredoxin.;Transcript_evidence=AK099499 (DDBJ%2C Best hit);ORF_evidence=NP_001150750.1 (RefSeq);GO=Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),4Fe-4S ferredoxin%2C iron-sulpur binding domain (IPR017896);NIAS_FLcDNA=J013028A12;TENOR=Os06t0474800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	15918601	15918802	.	-	.	Parent=Os06t0474800-01
Chr06	irgsp1_rep	CDS	15918538	15918600	.	-	0	Parent=Os06t0474800-01
Chr06	irgsp1_rep	CDS	15918192	15918369	.	-	0	Parent=Os06t0474800-01
Chr06	irgsp1_rep	CDS	15917968	15918074	.	-	2	Parent=Os06t0474800-01
Chr06	irgsp1_rep	CDS	15917360	15917582	.	-	0	Parent=Os06t0474800-01
Chr06	irgsp1_rep	CDS	15915675	15915814	.	-	2	Parent=Os06t0474800-01
Chr06	irgsp1_rep	three_prime_UTR	15915521	15915674	.	-	.	Parent=Os06t0474800-01
Chr06	irgsp1_rep	mRNA	15915898	15918793	.	-	.	ID=Os06t0474800-02;Name=Os06t0474800-02;Locus_id=Os06g0474800;Note=Similar to 3Fe-4S ferredoxin.;Transcript_evidence=AK111525 (DDBJ%2C Best hit);ORF_evidence=NP_001150750.1 (RefSeq);GO=Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),4Fe-4S ferredoxin%2C iron-sulpur binding domain (IPR017896);NIAS_FLcDNA=J013022M11;Expression=AK111525;TENOR=Os06t0474800-02;KEGG=Os06t0474800-02
Chr06	irgsp1_rep	five_prime_UTR	15918601	15918793	.	-	.	Parent=Os06t0474800-02
Chr06	irgsp1_rep	CDS	15918538	15918600	.	-	0	Parent=Os06t0474800-02
Chr06	irgsp1_rep	CDS	15918192	15918369	.	-	0	Parent=Os06t0474800-02
Chr06	irgsp1_rep	CDS	15917968	15918074	.	-	2	Parent=Os06t0474800-02
Chr06	irgsp1_rep	CDS	15917346	15917582	.	-	0	Parent=Os06t0474800-02
Chr06	irgsp1_rep	three_prime_UTR	15915898	15917345	.	-	.	Parent=Os06t0474800-02
Chr06	irgsp1_rep	mRNA	15915710	15917638	.	+	.	ID=Os06t0474833-00;Name=Os06t0474833-00;Locus_id=Os06g0474833;Note=Hypothetical gene.;Transcript_evidence=BT061807 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0474833-00;KEGG=Os06t0474833-00
Chr06	irgsp1_rep	five_prime_UTR	15915710	15915840	.	+	.	Parent=Os06t0474833-00
Chr06	irgsp1_rep	five_prime_UTR	15917318	15917385	.	+	.	Parent=Os06t0474833-00
Chr06	irgsp1_rep	CDS	15917386	15917619	.	+	0	Parent=Os06t0474833-00
Chr06	irgsp1_rep	three_prime_UTR	15917620	15917638	.	+	.	Parent=Os06t0474833-00
Chr06	irgsp1_rep	mRNA	15919207	15920404	.	-	.	ID=Os06t0474866-00;Name=Os06t0474866-00;Locus_id=Os06g0474866;Note=Similar to Alpha-glucan water dikinase (Fragment).;Transcript_evidence=BT061194 (DDBJ);ORF_evidence=C3W8P1 (UniProt);GO=Biological Process: phosphorylation (GO:0016310),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524),Molecular Function: kinase activity (GO:0016301),Molecular Function: ligase activity (GO:0016874);InterPro=Pyruvate phosphate dikinase%2C PEP/pyruvate-binding (IPR002192),ATP-grasp fold%2C subdomain 1 (IPR013815),ATP-grasp fold%2C subdomain 2 (IPR013816);TENOR=Os06t0474866-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	15920346	15920404	.	-	.	Parent=Os06t0474866-00
Chr06	irgsp1_rep	CDS	15920307	15920345	.	-	0	Parent=Os06t0474866-00
Chr06	irgsp1_rep	CDS	15919770	15919982	.	-	0	Parent=Os06t0474866-00
Chr06	irgsp1_rep	three_prime_UTR	15919708	15919769	.	-	.	Parent=Os06t0474866-00
Chr06	irgsp1_rep	three_prime_UTR	15919533	15919639	.	-	.	Parent=Os06t0474866-00
Chr06	irgsp1_rep	three_prime_UTR	15919207	15919461	.	-	.	Parent=Os06t0474866-00
Chr06	irgsp1_rep	mRNA	15929439	15933069	.	-	.	ID=Os06t0474900-01;Name=Os06t0474900-01;Locus_id=Os06g0474900;CGSNL Gene Symbol=MORC6A;CGSNL Gene Name=MICRORCHIDIA PROTEIN 6A;Oryzabase Gene Symbol Synonym(s)=OsMORC6a;Oryzabase Gene Name Synonym(s)=Microrchidia protein 6a;Note=Conserved hypothetical protein.;Transcript_evidence=AK107179 (DDBJ%2C Best hit);ORF_evidence=B9FTA5 (UniProt);NIAS_FLcDNA=002-124-H01;Oryzabase=22640;Expression=AK107179;TENOR=Os06t0474900-01;KEGG=Os06t0474900-01
Chr06	irgsp1_rep	five_prime_UTR	15932733	15933069	.	-	.	Parent=Os06t0474900-01
Chr06	irgsp1_rep	five_prime_UTR	15931995	15932111	.	-	.	Parent=Os06t0474900-01
Chr06	irgsp1_rep	five_prime_UTR	15931521	15931528	.	-	.	Parent=Os06t0474900-01
Chr06	irgsp1_rep	CDS	15930773	15931520	.	-	0	Parent=Os06t0474900-01
Chr06	irgsp1_rep	CDS	15929591	15929676	.	-	2	Parent=Os06t0474900-01
Chr06	irgsp1_rep	three_prime_UTR	15929439	15929590	.	-	.	Parent=Os06t0474900-01
Chr06	irgsp1_rep	mRNA	15923035	15933041	.	-	.	ID=Os06t0474900-02;Name=Os06t0474900-02;Locus_id=Os06g0474900;CGSNL Gene Symbol=MORC6A;CGSNL Gene Name=MICRORCHIDIA PROTEIN 6A;Oryzabase Gene Symbol Synonym(s)=OsMORC6a;Oryzabase Gene Name Synonym(s)=Microrchidia protein 6a;Note=Conserved hypothetical protein.;Transcript_evidence=AK120053 (DDBJ%2C Best hit);ORF_evidence=B8B225 (UniProt);NIAS_FLcDNA=J013000K15;Oryzabase=22640;Expression=AK120053;TENOR=Os06t0474900-02;KEGG=Os06t0474900-02
Chr06	irgsp1_rep	five_prime_UTR	15932733	15933041	.	-	.	Parent=Os06t0474900-02
Chr06	irgsp1_rep	five_prime_UTR	15931995	15932111	.	-	.	Parent=Os06t0474900-02
Chr06	irgsp1_rep	five_prime_UTR	15931521	15931528	.	-	.	Parent=Os06t0474900-02
Chr06	irgsp1_rep	CDS	15930773	15931520	.	-	0	Parent=Os06t0474900-02
Chr06	irgsp1_rep	CDS	15929591	15929676	.	-	2	Parent=Os06t0474900-02
Chr06	irgsp1_rep	three_prime_UTR	15929583	15929590	.	-	.	Parent=Os06t0474900-02
Chr06	irgsp1_rep	three_prime_UTR	15929449	15929483	.	-	.	Parent=Os06t0474900-02
Chr06	irgsp1_rep	three_prime_UTR	15929284	15929362	.	-	.	Parent=Os06t0474900-02
Chr06	irgsp1_rep	three_prime_UTR	15929049	15929138	.	-	.	Parent=Os06t0474900-02
Chr06	irgsp1_rep	three_prime_UTR	15928892	15928967	.	-	.	Parent=Os06t0474900-02
Chr06	irgsp1_rep	three_prime_UTR	15928566	15928644	.	-	.	Parent=Os06t0474900-02
Chr06	irgsp1_rep	three_prime_UTR	15928248	15928382	.	-	.	Parent=Os06t0474900-02
Chr06	irgsp1_rep	three_prime_UTR	15927587	15927685	.	-	.	Parent=Os06t0474900-02
Chr06	irgsp1_rep	three_prime_UTR	15925831	15925932	.	-	.	Parent=Os06t0474900-02
Chr06	irgsp1_rep	three_prime_UTR	15925597	15925743	.	-	.	Parent=Os06t0474900-02
Chr06	irgsp1_rep	three_prime_UTR	15925329	15925421	.	-	.	Parent=Os06t0474900-02
Chr06	irgsp1_rep	three_prime_UTR	15924856	15924904	.	-	.	Parent=Os06t0474900-02
Chr06	irgsp1_rep	three_prime_UTR	15924652	15924763	.	-	.	Parent=Os06t0474900-02
Chr06	irgsp1_rep	three_prime_UTR	15924312	15924487	.	-	.	Parent=Os06t0474900-02
Chr06	irgsp1_rep	three_prime_UTR	15924128	15924234	.	-	.	Parent=Os06t0474900-02
Chr06	irgsp1_rep	three_prime_UTR	15923993	15924048	.	-	.	Parent=Os06t0474900-02
Chr06	irgsp1_rep	three_prime_UTR	15923618	15923660	.	-	.	Parent=Os06t0474900-02
Chr06	irgsp1_rep	three_prime_UTR	15923035	15923435	.	-	.	Parent=Os06t0474900-02
Chr06	irgsp1_rep	mRNA	15968621	15973950	.	-	.	ID=Os06t0475400-01;Name=Os06t0475400-01;Locus_id=Os06g0475400;Note=Glycosyltransferase AER61%2C uncharacterized domain containing protein.;Transcript_evidence=AK102441 (DDBJ%2C Best hit);ORF_evidence=B6T444 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyltransferase AER61%2C uncharacterised (IPR007657);NIAS_FLcDNA=J033093L19;Oryzabase=15265;Expression=AK102441;TENOR=Os06t0475400-01;KEGG=Os06t0475400-01
Chr06	irgsp1_rep	five_prime_UTR	15973838	15973950	.	-	.	Parent=Os06t0475400-01
Chr06	irgsp1_rep	CDS	15973639	15973837	.	-	0	Parent=Os06t0475400-01
Chr06	irgsp1_rep	CDS	15972683	15972787	.	-	2	Parent=Os06t0475400-01
Chr06	irgsp1_rep	CDS	15970530	15970667	.	-	2	Parent=Os06t0475400-01
Chr06	irgsp1_rep	CDS	15968978	15970140	.	-	2	Parent=Os06t0475400-01
Chr06	irgsp1_rep	three_prime_UTR	15968621	15968977	.	-	.	Parent=Os06t0475400-01
Chr06	irgsp1_rep	mRNA	15983101	15985157	.	-	.	ID=Os06t0475500-01;Name=Os06t0475500-01;Locus_id=Os06g0475500;Note=Conserved hypothetical protein.;Transcript_evidence=AK065759 (DDBJ%2C Best hit);ORF_evidence=B8B226 (UniProt);NIAS_FLcDNA=J013042E06;Expression=AK065759;TENOR=Os06t0475500-01;KEGG=Os06t0475500-01
Chr06	irgsp1_rep	five_prime_UTR	15984786	15985157	.	-	.	Parent=Os06t0475500-01
Chr06	irgsp1_rep	CDS	15984519	15984785	.	-	0	Parent=Os06t0475500-01
Chr06	irgsp1_rep	three_prime_UTR	15983101	15984518	.	-	.	Parent=Os06t0475500-01
Chr06	irgsp1_rep	mRNA	15993615	15993896	.	+	.	ID=Os06t0475650-00;Name=Os06t0475650-00;Locus_id=Os06g0475650;Note=Conserved hypothetical protein.;Transcript_evidence=EU946950 (DDBJ);ORF_evidence=B8B227 (UniProt);TENOR=Os06t0475650-00
Chr06	irgsp1_rep	CDS	15993615	15993896	.	+	0	Parent=Os06t0475650-00
Chr06	irgsp1_rep	mRNA	15995581	15996006	.	+	.	ID=Os06t0475800-00;Name=Os06t0475800-00;Locus_id=Os06g0475800;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q69Y32 (UniProt);TENOR=Os06t0475800-00;KEGG=Os06t0475800-00
Chr06	irgsp1_rep	CDS	15995581	15996006	.	+	0	Parent=Os06t0475800-00
Chr06	irgsp1_rep	mRNA	16009608	16010394	.	+	.	ID=Os06t0476100-01;Name=Os06t0476100-01;Locus_id=Os06g0476100;Note=Similar to GRAS family transcription factor containing protein%2C expressed.;Transcript_evidence=AK065281 (DDBJ%2C Best hit);ORF_evidence=Q2RAQ8 (UniProt);InterPro=Transcription factor GRAS (IPR005202);NIAS_FLcDNA=J013002M01;Expression=AK065281;TENOR=Os06t0476100-01;KEGG=Os06t0476100-01
Chr06	irgsp1_rep	five_prime_UTR	16009608	16009929	.	+	.	Parent=Os06t0476100-01
Chr06	irgsp1_rep	CDS	16009930	16010322	.	+	0	Parent=Os06t0476100-01
Chr06	irgsp1_rep	three_prime_UTR	16010323	16010394	.	+	.	Parent=Os06t0476100-01
Chr06	irgsp1_rep	mRNA	16009846	16010226	.	-	.	ID=Os06t0476150-00;Name=Os06t0476150-00;Locus_id=Os06g0476150;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001176344.1 (RefSeq);TENOR=Os06t0476150-00
Chr06	irgsp1_rep	CDS	16009846	16010226	.	-	0	Parent=Os06t0476150-00
Chr06	irgsp1_rep	mRNA	16011333	16032779	.	+	.	ID=Os06t0476200-01;Name=Os06t0476200-01;Locus_id=Os06g0476200;Note=Similar to Phosphoglucomutase precursor (EC 5.4.2.2).;Transcript_evidence=AK068502 (DDBJ%2C Best hit);ORF_evidence=Q43156 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: intramolecular transferase activity%2C phosphotransferases (GO:0016868);InterPro=Alpha-D-phosphohexomutase superfamily (IPR005841),Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain I (IPR005844),Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain II (IPR005845),Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain III (IPR005846),Alpha-D-phosphohexomutase%2C alpha/beta/alpha I/II/III (IPR016055);NIAS_FLcDNA=J013155G18;Expression=AK068502;TENOR=Os06t0476200-01;KEGG=Os06t0476200-01 (EC:5.4.2.2%2C EC:5.4.2.8)
Chr06	irgsp1_rep	five_prime_UTR	16011333	16011422	.	+	.	Parent=Os06t0476200-01
Chr06	irgsp1_rep	CDS	16011423	16011992	.	+	0	Parent=Os06t0476200-01
Chr06	irgsp1_rep	CDS	16017942	16018209	.	+	0	Parent=Os06t0476200-01
Chr06	irgsp1_rep	CDS	16018399	16018917	.	+	2	Parent=Os06t0476200-01
Chr06	irgsp1_rep	CDS	16019109	16019308	.	+	2	Parent=Os06t0476200-01
Chr06	irgsp1_rep	CDS	16023381	16023493	.	+	0	Parent=Os06t0476200-01
Chr06	irgsp1_rep	CDS	16032318	16032458	.	+	1	Parent=Os06t0476200-01
Chr06	irgsp1_rep	CDS	16032563	16032629	.	+	1	Parent=Os06t0476200-01
Chr06	irgsp1_rep	three_prime_UTR	16032630	16032779	.	+	.	Parent=Os06t0476200-01
Chr06	irgsp1_rep	mRNA	16011480	16019059	.	+	.	ID=Os06t0476200-02;Name=Os06t0476200-02;Locus_id=Os06g0476200;Note=Similar to predicted protein.;Transcript_evidence=AK065566 (DDBJ%2C Best hit);ORF_evidence=Q43156 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: intramolecular transferase activity%2C phosphotransferases (GO:0016868);InterPro=Alpha-D-phosphohexomutase superfamily (IPR005841),Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain I (IPR005844),Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain II (IPR005845),Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain III (IPR005846),Alpha-D-phosphohexomutase%2C alpha/beta/alpha I/II/III (IPR016055);NIAS_FLcDNA=J013033I15;Expression=AK065566;TENOR=Os06t0476200-02;KEGG=Os06t0476200-02 (EC:5.4.2.8)
Chr06	irgsp1_rep	five_prime_UTR	16011480	16011488	.	+	.	Parent=Os06t0476200-02
Chr06	irgsp1_rep	CDS	16011489	16011992	.	+	0	Parent=Os06t0476200-02
Chr06	irgsp1_rep	CDS	16017942	16018209	.	+	0	Parent=Os06t0476200-02
Chr06	irgsp1_rep	CDS	16018399	16019048	.	+	2	Parent=Os06t0476200-02
Chr06	irgsp1_rep	three_prime_UTR	16019049	16019059	.	+	.	Parent=Os06t0476200-02
Chr06	irgsp1_rep	mRNA	16041392	16041772	.	+	.	ID=Os06t0476400-00;Name=Os06t0476400-00;Locus_id=Os06g0476400;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001174788.1 (RefSeq);TENOR=Os06t0476400-00
Chr06	irgsp1_rep	CDS	16041392	16041772	.	+	0	Parent=Os06t0476400-00
Chr06	irgsp1_rep	mRNA	16048709	16049494	.	+	.	ID=Os06t0476500-00;Name=Os06t0476500-00;Locus_id=Os06g0476500;Note=Hypothetical conserved gene.;Transcript_evidence=AK111357 (DDBJ%2C Secondary hit);ORF_evidence=Q6YXA4 (UniProt);Expression=AK111357;TENOR=Os06t0476500-00;KEGG=Os06t0476500-00
Chr06	irgsp1_rep	five_prime_UTR	16048709	16048873	.	+	.	Parent=Os06t0476500-00
Chr06	irgsp1_rep	five_prime_UTR	16048906	16048951	.	+	.	Parent=Os06t0476500-00
Chr06	irgsp1_rep	five_prime_UTR	16049043	16049072	.	+	.	Parent=Os06t0476500-00
Chr06	irgsp1_rep	CDS	16049073	16049285	.	+	0	Parent=Os06t0476500-00
Chr06	irgsp1_rep	three_prime_UTR	16049286	16049494	.	+	.	Parent=Os06t0476500-00
Chr06	irgsp1_rep	mRNA	16060230	16062325	.	+	.	ID=Os06t0476900-01;Name=Os06t0476900-01;Locus_id=Os06g0476900;Note=Conserved hypothetical protein.;Transcript_evidence=AK109851 (DDBJ%2C Best hit);ORF_evidence=Q6ZD42 (UniProt);NIAS_FLcDNA=002-148-F08;TENOR=Os06t0476900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	16060230	16060989	.	+	.	Parent=Os06t0476900-01
Chr06	irgsp1_rep	CDS	16060990	16061223	.	+	0	Parent=Os06t0476900-01
Chr06	irgsp1_rep	three_prime_UTR	16061224	16062325	.	+	.	Parent=Os06t0476900-01
Chr06	irgsp1_rep	mRNA	16093519	16094237	.	+	.	ID=Os06t0477400-01;Name=Os06t0477400-01;Locus_id=Os06g0477400;Note=Hypothetical gene.;Transcript_evidence=AK071157 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023076C22;Expression=AK071157;TENOR=Os06t0477400-01;KEGG=Os06t0477400-01
Chr06	irgsp1_rep	five_prime_UTR	16093519	16093884	.	+	.	Parent=Os06t0477400-01
Chr06	irgsp1_rep	CDS	16093885	16094097	.	+	0	Parent=Os06t0477400-01
Chr06	irgsp1_rep	three_prime_UTR	16094098	16094237	.	+	.	Parent=Os06t0477400-01
Chr06	irgsp1_rep	mRNA	16100089	16101983	.	-	.	ID=Os06t0477600-01;Name=Os06t0477600-01;Locus_id=Os06g0477600;Note=Non-protein coding transcript.;Transcript_evidence=AK105562 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-128-B10;Oryzabase=20457;TENOR=Os06t0477600-01
Chr06	irgsp1_rep	exon	16100513	16101983	.	-	.	Parent=Os06t0477600-01
Chr06	irgsp1_rep	exon	16100089	16100414	.	-	.	Parent=Os06t0477600-01
Chr06	irgsp1_rep	mRNA	16198162	16200384	.	+	.	ID=Os06t0478600-01;Name=Os06t0478600-01;Locus_id=Os06g0478600;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=AK287827 (DDBJ%2C Best hit),AK105019 (DDBJ%2C Best hit);ORF_evidence=B4F960 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J065185G19,001-009-F01;TENOR=Os06t0478600-01;KEGG=Os06t0478600-01
Chr06	irgsp1_rep	five_prime_UTR	16198162	16198359	.	+	.	Parent=Os06t0478600-01
Chr06	irgsp1_rep	CDS	16198360	16199664	.	+	0	Parent=Os06t0478600-01
Chr06	irgsp1_rep	three_prime_UTR	16199665	16200384	.	+	.	Parent=Os06t0478600-01
Chr06	irgsp1_rep	mRNA	16198320	16200060	.	+	.	ID=Os06t0478600-03;Name=Os06t0478600-03;Locus_id=Os06g0478600;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=AK064086 (DDBJ%2C Best hit);ORF_evidence=B4F960 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=002-100-B12;Expression=AK064086;TENOR=Os06t0478600-03;KEGG=Os06t0478600-03
Chr06	irgsp1_rep	five_prime_UTR	16198320	16198359	.	+	.	Parent=Os06t0478600-03
Chr06	irgsp1_rep	CDS	16198360	16199664	.	+	0	Parent=Os06t0478600-03
Chr06	irgsp1_rep	three_prime_UTR	16199665	16200060	.	+	.	Parent=Os06t0478600-03
Chr06	irgsp1_rep	mRNA	16224026	16225286	.	+	.	ID=Os06t0479200-01;Name=Os06t0479200-01;Locus_id=Os06g0479200;Note=Conserved hypothetical protein.;Transcript_evidence=AK106207 (DDBJ%2C Best hit),AK072795 (DDBJ%2C Best hit),AK099423 (DDBJ%2C Best hit),AK102674 (DDBJ%2C Best hit);ORF_evidence=Q6H481 (UniProt);NIAS_FLcDNA=001-208-G03,J023140H21,J013008I21,J033102C17;TENOR=Os06t0479200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	16224026	16224316	.	+	.	Parent=Os06t0479200-01
Chr06	irgsp1_rep	five_prime_UTR	16224406	16224860	.	+	.	Parent=Os06t0479200-01
Chr06	irgsp1_rep	CDS	16224861	16225103	.	+	0	Parent=Os06t0479200-01
Chr06	irgsp1_rep	three_prime_UTR	16225104	16225286	.	+	.	Parent=Os06t0479200-01
Chr06	irgsp1_rep	mRNA	16224026	16225195	.	+	.	ID=Os06t0479200-02;Name=Os06t0479200-02;Locus_id=Os06g0479200;Note=Conserved hypothetical protein.;Transcript_evidence=AK104074 (DDBJ%2C Best hit);ORF_evidence=Q6H481 (UniProt);NIAS_FLcDNA=001-027-F08;TENOR=Os06t0479200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	16224026	16224860	.	+	.	Parent=Os06t0479200-02
Chr06	irgsp1_rep	CDS	16224861	16225103	.	+	0	Parent=Os06t0479200-02
Chr06	irgsp1_rep	three_prime_UTR	16225104	16225195	.	+	.	Parent=Os06t0479200-02
Chr06	irgsp1_rep	mRNA	16244360	16247112	.	-	.	ID=Os06t0479400-01;Name=Os06t0479400-01;Locus_id=Os06g0479400;Note=Similar to Phenylcoumaran benzylic ether reductase homolog TH6.;Transcript_evidence=AK109944 (DDBJ%2C Best hit);ORF_evidence=B6VRE8 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NmrA-like (IPR008030),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=002-154-G12;Expression=AK109944;TENOR=Os06t0479400-01;KEGG=Os06t0479400-01
Chr06	irgsp1_rep	five_prime_UTR	16247034	16247112	.	-	.	Parent=Os06t0479400-01
Chr06	irgsp1_rep	CDS	16246815	16247033	.	-	0	Parent=Os06t0479400-01
Chr06	irgsp1_rep	CDS	16246577	16246711	.	-	0	Parent=Os06t0479400-01
Chr06	irgsp1_rep	CDS	16246248	16246486	.	-	0	Parent=Os06t0479400-01
Chr06	irgsp1_rep	CDS	16244795	16244849	.	-	1	Parent=Os06t0479400-01
Chr06	irgsp1_rep	three_prime_UTR	16244360	16244794	.	-	.	Parent=Os06t0479400-01
Chr06	irgsp1_rep	mRNA	16256990	16261557	.	+	.	ID=Os06t0479701-01;Name=Os06t0479701-01;Locus_id=Os06g0479701;Note=Conserved hypothetical protein.;Transcript_evidence=AK288456 (DDBJ%2C Best hit);ORF_evidence=Q2QPS3 (UniProt);NIAS_FLcDNA=J090035B12;TENOR=Os06t0479701-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	16256990	16257860	.	+	.	Parent=Os06t0479701-01
Chr06	irgsp1_rep	CDS	16257861	16258331	.	+	0	Parent=Os06t0479701-01
Chr06	irgsp1_rep	three_prime_UTR	16258332	16261557	.	+	.	Parent=Os06t0479701-01
Chr06	irgsp1_rep	mRNA	16264256	16270836	.	-	.	ID=Os06t0480000-01;Name=Os06t0480000-01;Locus_id=Os06g0480000;Oryzabase Gene Symbol Synonym(s)=OsPUB74;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 74%2C U-box protein 74;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK066627 (DDBJ%2C Best hit);ORF_evidence=B6SV52 (UniProt);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488);InterPro=U box domain (IPR003613),Armadillo-like helical (IPR011989),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013072C11;Oryzabase=17863;Expression=AK066627;TENOR=Os06t0480000-01;KEGG=Os06t0480000-01
Chr06	irgsp1_rep	five_prime_UTR	16270527	16270836	.	-	.	Parent=Os06t0480000-01
Chr06	irgsp1_rep	five_prime_UTR	16270384	16270439	.	-	.	Parent=Os06t0480000-01
Chr06	irgsp1_rep	five_prime_UTR	16270192	16270248	.	-	.	Parent=Os06t0480000-01
Chr06	irgsp1_rep	five_prime_UTR	16268544	16268576	.	-	.	Parent=Os06t0480000-01
Chr06	irgsp1_rep	CDS	16268487	16268543	.	-	0	Parent=Os06t0480000-01
Chr06	irgsp1_rep	CDS	16267632	16267817	.	-	0	Parent=Os06t0480000-01
Chr06	irgsp1_rep	CDS	16267378	16267485	.	-	0	Parent=Os06t0480000-01
Chr06	irgsp1_rep	CDS	16265770	16266929	.	-	0	Parent=Os06t0480000-01
Chr06	irgsp1_rep	CDS	16264680	16265454	.	-	1	Parent=Os06t0480000-01
Chr06	irgsp1_rep	three_prime_UTR	16264256	16264679	.	-	.	Parent=Os06t0480000-01
Chr06	irgsp1_rep	mRNA	16292587	16305052	.	+	.	ID=Os06t0480500-01;Name=Os06t0480500-01;Locus_id=Os06g0480500;Note=Non-protein coding transcript.;Transcript_evidence=AK071496 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023096M09;TENOR=Os06t0480500-01
Chr06	irgsp1_rep	exon	16292587	16292849	.	+	.	Parent=Os06t0480500-01
Chr06	irgsp1_rep	exon	16295099	16295338	.	+	.	Parent=Os06t0480500-01
Chr06	irgsp1_rep	exon	16304554	16305052	.	+	.	Parent=Os06t0480500-01
Chr06	irgsp1_rep	mRNA	16307602	16308189	.	-	.	ID=Os06t0481000-01;Name=Os06t0481000-01;Locus_id=Os06g0481000;Note=Non-protein coding transcript.;Transcript_evidence=AK058928 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-009-C06;TENOR=Os06t0481000-01
Chr06	irgsp1_rep	exon	16307602	16308189	.	-	.	Parent=Os06t0481000-01
Chr06	irgsp1_rep	mRNA	16330562	16331320	.	-	.	ID=Os06t0481200-00;Name=Os06t0481200-00;Locus_id=Os06g0481200;Note=Hypothetical protein.;Transcript_evidence=tplb0028j17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0481200-00
Chr06	irgsp1_rep	five_prime_UTR	16331319	16331320	.	-	.	Parent=Os06t0481200-00
Chr06	irgsp1_rep	CDS	16330562	16331318	.	-	0	Parent=Os06t0481200-00
Chr06	irgsp1_rep	mRNA	16331277	16331464	.	+	.	ID=Os06t0481400-00;Name=Os06t0481400-00;Locus_id=Os06g0481400;Note=Non-protein coding transcript.;Transcript_evidence=CT836288 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os06t0481400-00
Chr06	irgsp1_rep	exon	16331277	16331464	.	+	.	Parent=Os06t0481400-00
Chr06	irgsp1_rep	mRNA	16345749	16347277	.	-	.	ID=Os06t0481800-00;Name=Os06t0481800-00;Locus_id=Os06g0481800;Note=Myb/SANT-like domain domain containing protein.;Transcript_evidence=BT039927 (DDBJ);ORF_evidence=NP_001176912.1 (RefSeq);InterPro=Myb/SANT-like domain (IPR024752);TENOR=Os06t0481800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	16346954	16347277	.	-	0	Parent=Os06t0481800-00
Chr06	irgsp1_rep	CDS	16346786	16346861	.	-	0	Parent=Os06t0481800-00
Chr06	irgsp1_rep	CDS	16346050	16346339	.	-	2	Parent=Os06t0481800-00
Chr06	irgsp1_rep	three_prime_UTR	16345749	16346049	.	-	.	Parent=Os06t0481800-00
Chr06	irgsp1_rep	mRNA	16347523	16350520	.	-	.	ID=Os06t0481850-00;Name=Os06t0481850-00;Locus_id=Os06g0481850;Note=Hypothetical conserved gene.;Transcript_evidence=AK111398 (DDBJ%2C Secondary hit);ORF_evidence=NP_001176912.1 (RefSeq);GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Putative harbinger transposase-derived nuclease (IPR006912);Expression=AK111398;TENOR=Os06t0481850-00;KEGG=Os06t0481850-00
Chr06	irgsp1_rep	five_prime_UTR	16350288	16350520	.	-	.	Parent=Os06t0481850-00
Chr06	irgsp1_rep	five_prime_UTR	16349406	16349465	.	-	.	Parent=Os06t0481850-00
Chr06	irgsp1_rep	five_prime_UTR	16348772	16348910	.	-	.	Parent=Os06t0481850-00
Chr06	irgsp1_rep	CDS	16348400	16348771	.	-	0	Parent=Os06t0481850-00
Chr06	irgsp1_rep	CDS	16347609	16348304	.	-	0	Parent=Os06t0481850-00
Chr06	irgsp1_rep	three_prime_UTR	16347523	16347608	.	-	.	Parent=Os06t0481850-00
Chr06	irgsp1_rep	mRNA	16352352	16353026	.	+	.	ID=Os06t0481900-00;Name=Os06t0481900-00;Locus_id=Os06g0481900;Note=Conserved hypothetical protein.;Transcript_evidence=FP100059 (DDBJ);ORF_evidence=Q67W17 (UniProt);TENOR=Os06t0481900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	16352352	16353026	.	+	0	Parent=Os06t0481900-00
Chr06	irgsp1_rep	mRNA	16363402	16366454	.	-	.	ID=Os06t0482200-01;Name=Os06t0482200-01;Locus_id=Os06g0482200;Note=Thioredoxin fold domain containing protein.;Transcript_evidence=AK119703 (DDBJ%2C Best hit);ORF_evidence=B8B2D8 (UniProt);InterPro=Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=002-157-D11;Expression=AK119703;TENOR=Os06t0482200-01;KEGG=Os06t0482200-01
Chr06	irgsp1_rep	five_prime_UTR	16366195	16366454	.	-	.	Parent=Os06t0482200-01
Chr06	irgsp1_rep	five_prime_UTR	16365986	16366008	.	-	.	Parent=Os06t0482200-01
Chr06	irgsp1_rep	CDS	16365930	16365985	.	-	0	Parent=Os06t0482200-01
Chr06	irgsp1_rep	CDS	16365504	16365623	.	-	1	Parent=Os06t0482200-01
Chr06	irgsp1_rep	CDS	16365313	16365391	.	-	1	Parent=Os06t0482200-01
Chr06	irgsp1_rep	CDS	16364577	16364663	.	-	0	Parent=Os06t0482200-01
Chr06	irgsp1_rep	CDS	16363783	16363845	.	-	0	Parent=Os06t0482200-01
Chr06	irgsp1_rep	CDS	16363543	16363620	.	-	0	Parent=Os06t0482200-01
Chr06	irgsp1_rep	three_prime_UTR	16363402	16363542	.	-	.	Parent=Os06t0482200-01
Chr06	irgsp1_rep	mRNA	16386735	16398639	.	+	.	ID=Os06t0483100-00;Name=Os06t0483100-00;Locus_id=Os06g0483100;Note=Similar to Luminal-binding protein 4.;Transcript_evidence=BT016692 (DDBJ);ORF_evidence=Q03684 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Heat shock protein Hsp70 (IPR001023),Heat shock protein 70 (IPR013126);TENOR=Os06t0483100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	16386735	16387199	.	+	0	Parent=Os06t0483100-00
Chr06	irgsp1_rep	three_prime_UTR	16387200	16387390	.	+	.	Parent=Os06t0483100-00
Chr06	irgsp1_rep	three_prime_UTR	16387468	16387590	.	+	.	Parent=Os06t0483100-00
Chr06	irgsp1_rep	three_prime_UTR	16397967	16398639	.	+	.	Parent=Os06t0483100-00
Chr06	irgsp1_rep	mRNA	16386377	16398651	.	-	.	ID=Os06t0483150-00;Name=Os06t0483150-00;Locus_id=Os06g0483150;Note=Glutamate dehydrogenase%2C NAD-specific domain containing protein.;Transcript_evidence=tplb0059b11 (Wheat FLcDNA);ORF_evidence=longestORF;InterPro=Glutamate dehydrogenase%2C NAD-specific (IPR019651);TENOR=Os06t0483150-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	16397969	16398651	.	-	.	Parent=Os06t0483150-00
Chr06	irgsp1_rep	five_prime_UTR	16387367	16387605	.	-	.	Parent=Os06t0483150-00
Chr06	irgsp1_rep	five_prime_UTR	16387101	16387276	.	-	.	Parent=Os06t0483150-00
Chr06	irgsp1_rep	CDS	16386768	16387100	.	-	0	Parent=Os06t0483150-00
Chr06	irgsp1_rep	three_prime_UTR	16386377	16386767	.	-	.	Parent=Os06t0483150-00
Chr06	irgsp1_rep	mRNA	16429513	16432426	.	-	.	ID=Os06t0483200-01;Name=Os06t0483200-01;Locus_id=Os06g0483200;Oryzabase Gene Symbol Synonym(s)=OsOSC6;Oryzabase Gene Name Synonym(s)=oxidosqualene cyclase 6;Note=Similar to cycloartenol synthase.;Transcript_evidence=AK063066 (DDBJ%2C Best hit);ORF_evidence=NP_001152006.1 (RefSeq);NIAS_FLcDNA=001-110-G07;Oryzabase=17979;Expression=AK063066;TENOR=Os06t0483200-01;KEGG=Os06t0483200-01 (EC:5.4.99.8)
Chr06	irgsp1_rep	five_prime_UTR	16432295	16432426	.	-	.	Parent=Os06t0483200-01
Chr06	irgsp1_rep	CDS	16432097	16432294	.	-	0	Parent=Os06t0483200-01
Chr06	irgsp1_rep	CDS	16429725	16430009	.	-	0	Parent=Os06t0483200-01
Chr06	irgsp1_rep	three_prime_UTR	16429513	16429724	.	-	.	Parent=Os06t0483200-01
Chr06	irgsp1_rep	mRNA	16400699	16432408	.	-	.	ID=Os06t0483200-02;Name=Os06t0483200-02;Locus_id=Os06g0483200;Oryzabase Gene Symbol Synonym(s)=OsOSC6;Oryzabase Gene Name Synonym(s)=oxidosqualene cyclase 6;Note=Similar to Beta-amyrin synthase.;Transcript_evidence=AK120065 (DDBJ%2C Best hit);ORF_evidence=XP_002445263.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Prenyltransferase/squalene oxidase (IPR001330),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930);NIAS_FLcDNA=J013002B12;Oryzabase=17979;Expression=AK120065;TENOR=Os06t0483200-02;KEGG=Os06t0483200-02 (EC:5.4.99.8)
Chr06	irgsp1_rep	five_prime_UTR	16432295	16432408	.	-	.	Parent=Os06t0483200-02
Chr06	irgsp1_rep	CDS	16432097	16432294	.	-	0	Parent=Os06t0483200-02
Chr06	irgsp1_rep	CDS	16424197	16424382	.	-	0	Parent=Os06t0483200-02
Chr06	irgsp1_rep	CDS	16423743	16423832	.	-	0	Parent=Os06t0483200-02
Chr06	irgsp1_rep	CDS	16423544	16423651	.	-	0	Parent=Os06t0483200-02
Chr06	irgsp1_rep	three_prime_UTR	16423462	16423543	.	-	.	Parent=Os06t0483200-02
Chr06	irgsp1_rep	three_prime_UTR	16422665	16422749	.	-	.	Parent=Os06t0483200-02
Chr06	irgsp1_rep	three_prime_UTR	16422364	16422530	.	-	.	Parent=Os06t0483200-02
Chr06	irgsp1_rep	three_prime_UTR	16420461	16420649	.	-	.	Parent=Os06t0483200-02
Chr06	irgsp1_rep	three_prime_UTR	16419938	16420051	.	-	.	Parent=Os06t0483200-02
Chr06	irgsp1_rep	three_prime_UTR	16416336	16416458	.	-	.	Parent=Os06t0483200-02
Chr06	irgsp1_rep	three_prime_UTR	16416133	16416252	.	-	.	Parent=Os06t0483200-02
Chr06	irgsp1_rep	three_prime_UTR	16414988	16415086	.	-	.	Parent=Os06t0483200-02
Chr06	irgsp1_rep	three_prime_UTR	16410145	16413299	.	-	.	Parent=Os06t0483200-02
Chr06	irgsp1_rep	three_prime_UTR	16400699	16401055	.	-	.	Parent=Os06t0483200-02
Chr06	irgsp1_rep	mRNA	16426130	16426946	.	-	.	ID=Os06t0483301-01;Name=Os06t0483301-01;Locus_id=Os06g0483301;Note=Hypothetical gene.;Transcript_evidence=AK064294 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-105-H10;Expression=AK064294;TENOR=Os06t0483301-01;KEGG=Os06t0483301-01
Chr06	irgsp1_rep	five_prime_UTR	16426831	16426946	.	-	.	Parent=Os06t0483301-01
Chr06	irgsp1_rep	CDS	16426594	16426830	.	-	0	Parent=Os06t0483301-01
Chr06	irgsp1_rep	three_prime_UTR	16426130	16426593	.	-	.	Parent=Os06t0483301-01
Chr06	irgsp1_rep	mRNA	16440865	16444414	.	-	.	ID=Os06t0483500-01;Name=Os06t0483500-01;Locus_id=Os06g0483500;Note=Similar to H0124B04.15 protein.;Transcript_evidence=AK066173 (DDBJ%2C Best hit);ORF_evidence=Q259G1 (UniProt);NIAS_FLcDNA=J013055M08;Expression=AK066173;TENOR=Os06t0483500-01;KEGG=Os06t0483500-01
Chr06	irgsp1_rep	five_prime_UTR	16443338	16444414	.	-	.	Parent=Os06t0483500-01
Chr06	irgsp1_rep	CDS	16442096	16443337	.	-	0	Parent=Os06t0483500-01
Chr06	irgsp1_rep	three_prime_UTR	16440865	16442095	.	-	.	Parent=Os06t0483500-01
Chr06	irgsp1_rep	mRNA	16436859	16442840	.	-	.	ID=Os06t0483500-02;Name=Os06t0483500-02;Locus_id=Os06g0483500;Note=Similar to H0124B04.15 protein.;Transcript_evidence=AK119390 (DDBJ%2C Best hit);ORF_evidence=Q259G1 (UniProt);NIAS_FLcDNA=001-132-C09;Expression=AK119390;TENOR=Os06t0483500-02;KEGG=Os06t0483500-02
Chr06	irgsp1_rep	five_prime_UTR	16442840	16442840	.	-	.	Parent=Os06t0483500-02
Chr06	irgsp1_rep	CDS	16442096	16442839	.	-	0	Parent=Os06t0483500-02
Chr06	irgsp1_rep	three_prime_UTR	16440915	16442095	.	-	.	Parent=Os06t0483500-02
Chr06	irgsp1_rep	three_prime_UTR	16440616	16440690	.	-	.	Parent=Os06t0483500-02
Chr06	irgsp1_rep	three_prime_UTR	16438977	16439427	.	-	.	Parent=Os06t0483500-02
Chr06	irgsp1_rep	three_prime_UTR	16437207	16437825	.	-	.	Parent=Os06t0483500-02
Chr06	irgsp1_rep	three_prime_UTR	16436859	16437024	.	-	.	Parent=Os06t0483500-02
Chr06	irgsp1_rep	mRNA	16465950	16466542	.	-	.	ID=Os06t0483701-01;Name=Os06t0483701-01;Locus_id=Os06g0483701;Note=Hypothetical conserved gene.;Transcript_evidence=AK287763 (DDBJ%2C Best hit);ORF_evidence=Q10EV3 (UniProt);NIAS_FLcDNA=J065162M14;TENOR=Os06t0483701-01;KEGG=Os06t0483701-01
Chr06	irgsp1_rep	five_prime_UTR	16466250	16466542	.	-	.	Parent=Os06t0483701-01
Chr06	irgsp1_rep	CDS	16466103	16466249	.	-	0	Parent=Os06t0483701-01
Chr06	irgsp1_rep	three_prime_UTR	16465950	16466102	.	-	.	Parent=Os06t0483701-01
Chr06	irgsp1_rep	mRNA	16471613	16481720	.	-	.	ID=Os06t0483900-01;Name=Os06t0483900-01;Locus_id=Os06g0483900;Note=Homeodomain-like containing protein.;Transcript_evidence=AK099692 (DDBJ%2C Best hit);ORF_evidence=A2YD14 (UniProt);NIAS_FLcDNA=J013073N05;Expression=AK099692;TENOR=Os06t0483900-01;KEGG=Os06t0483900-01
Chr06	irgsp1_rep	five_prime_UTR	16481015	16481720	.	-	.	Parent=Os06t0483900-01
Chr06	irgsp1_rep	five_prime_UTR	16480817	16480888	.	-	.	Parent=Os06t0483900-01
Chr06	irgsp1_rep	five_prime_UTR	16479789	16479835	.	-	.	Parent=Os06t0483900-01
Chr06	irgsp1_rep	CDS	16479755	16479788	.	-	0	Parent=Os06t0483900-01
Chr06	irgsp1_rep	CDS	16478930	16479373	.	-	2	Parent=Os06t0483900-01
Chr06	irgsp1_rep	CDS	16477901	16477976	.	-	2	Parent=Os06t0483900-01
Chr06	irgsp1_rep	CDS	16475407	16475458	.	-	1	Parent=Os06t0483900-01
Chr06	irgsp1_rep	CDS	16473897	16474040	.	-	0	Parent=Os06t0483900-01
Chr06	irgsp1_rep	CDS	16473221	16473340	.	-	0	Parent=Os06t0483900-01
Chr06	irgsp1_rep	CDS	16471864	16471986	.	-	0	Parent=Os06t0483900-01
Chr06	irgsp1_rep	three_prime_UTR	16471613	16471863	.	-	.	Parent=Os06t0483900-01
Chr06	irgsp1_rep	mRNA	16501567	16503941	.	+	.	ID=Os06t0484400-01;Name=Os06t0484400-01;Locus_id=Os06g0484400;Note=Conserved hypothetical protein.;Transcript_evidence=AK106712 (DDBJ%2C Best hit);ORF_evidence=A3BBV1 (UniProt);NIAS_FLcDNA=002-114-F06;TENOR=Os06t0484400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	16501567	16501677	.	+	.	Parent=Os06t0484400-01
Chr06	irgsp1_rep	five_prime_UTR	16501892	16501953	.	+	.	Parent=Os06t0484400-01
Chr06	irgsp1_rep	five_prime_UTR	16502149	16502273	.	+	.	Parent=Os06t0484400-01
Chr06	irgsp1_rep	five_prime_UTR	16502373	16502597	.	+	.	Parent=Os06t0484400-01
Chr06	irgsp1_rep	CDS	16502598	16502608	.	+	0	Parent=Os06t0484400-01
Chr06	irgsp1_rep	CDS	16502697	16502988	.	+	1	Parent=Os06t0484400-01
Chr06	irgsp1_rep	three_prime_UTR	16502989	16503941	.	+	.	Parent=Os06t0484400-01
Chr06	irgsp1_rep	mRNA	16504159	16507947	.	-	.	ID=Os06t0484450-00;Name=Os06t0484450-00;Locus_id=Os06g0484450;Note=Similar to Chlorophyll a-b binding protein 2%2C chloroplastic.;Transcript_evidence=AK330772 (DDBJ);ORF_evidence=P12331 (UniProt);TENOR=Os06t0484450-00
Chr06	irgsp1_rep	CDS	16507690	16507947	.	-	0	Parent=Os06t0484450-00
Chr06	irgsp1_rep	CDS	16504159	16505055	.	-	0	Parent=Os06t0484450-00
Chr06	irgsp1_rep	mRNA	16504514	16505330	.	+	.	ID=Os06t0484500-01;Name=Os06t0484500-01;Locus_id=Os06g0484500;Note=Conserved hypothetical protein.;Transcript_evidence=AK108194 (DDBJ%2C Best hit);ORF_evidence=A2YD15 (UniProt);NIAS_FLcDNA=002-140-C05;TENOR=Os06t0484500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	16504514	16504515	.	+	.	Parent=Os06t0484500-01
Chr06	irgsp1_rep	CDS	16504516	16505202	.	+	0	Parent=Os06t0484500-01
Chr06	irgsp1_rep	three_prime_UTR	16505203	16505330	.	+	.	Parent=Os06t0484500-01
Chr06	irgsp1_rep	mRNA	16509328	16512799	.	+	.	ID=Os06t0484600-01;Name=Os06t0484600-01;Locus_id=Os06g0484600;Note=Similar to Pherophorin-S precursor.;Transcript_evidence=AK062871 (DDBJ%2C Best hit);ORF_evidence=NP_001149091.1 (RefSeq);InterPro=BolA protein (IPR002634);NIAS_FLcDNA=001-108-C06;Expression=AK062871;TENOR=Os06t0484600-01;KEGG=Os06t0484600-01
Chr06	irgsp1_rep	five_prime_UTR	16509328	16509398	.	+	.	Parent=Os06t0484600-01
Chr06	irgsp1_rep	CDS	16509399	16509677	.	+	0	Parent=Os06t0484600-01
Chr06	irgsp1_rep	CDS	16509799	16509866	.	+	0	Parent=Os06t0484600-01
Chr06	irgsp1_rep	CDS	16512491	16512644	.	+	1	Parent=Os06t0484600-01
Chr06	irgsp1_rep	three_prime_UTR	16512645	16512799	.	+	.	Parent=Os06t0484600-01
Chr06	irgsp1_rep	mRNA	16516156	16519190	.	-	.	ID=Os06t0484800-00;Name=Os06t0484800-00;Locus_id=Os06g0484800;Note=Reverse transcriptase domain containing protein.;Transcript_evidence=tplb0014n19 (Wheat FLcDNA);ORF_evidence=NP_001057661.2 (RefSeq);GO=Biological Process: RNA-dependent DNA replication (GO:0006278),Molecular Function: RNA binding (GO:0003723),Molecular Function: RNA-directed DNA polymerase activity (GO:0003964);InterPro=Reverse transcriptase (IPR000477),Endonuclease/exonuclease/phosphatase (IPR005135);TENOR=Os06t0484800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	16518972	16519190	.	-	.	Parent=Os06t0484800-00
Chr06	irgsp1_rep	CDS	16516401	16518971	.	-	0	Parent=Os06t0484800-00
Chr06	irgsp1_rep	three_prime_UTR	16516156	16516400	.	-	.	Parent=Os06t0484800-00
Chr06	irgsp1_rep	mRNA	16520642	16524647	.	-	.	ID=Os06t0484950-00;Name=Os06t0484950-00;Locus_id=Os06g0484950;Note=MULE transposase domain domain containing protein.;Transcript_evidence=AK120566 (DDBJ%2C Secondary hit);ORF_evidence=Q8GTZ4 (UniProt);InterPro=MULE transposase domain (IPR018289);TENOR=Os06t0484950-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	16524355	16524647	.	-	.	Parent=Os06t0484950-00
Chr06	irgsp1_rep	CDS	16524292	16524354	.	-	0	Parent=Os06t0484950-00
Chr06	irgsp1_rep	CDS	16522443	16523108	.	-	0	Parent=Os06t0484950-00
Chr06	irgsp1_rep	three_prime_UTR	16521557	16522442	.	-	.	Parent=Os06t0484950-00
Chr06	irgsp1_rep	three_prime_UTR	16521253	16521483	.	-	.	Parent=Os06t0484950-00
Chr06	irgsp1_rep	three_prime_UTR	16520642	16521171	.	-	.	Parent=Os06t0484950-00
Chr06	irgsp1_rep	mRNA	16538328	16543380	.	-	.	ID=Os06t0485100-01;Name=Os06t0485100-01;Locus_id=Os06g0485100;Note=Similar to Homeobox-like resistance.;Transcript_evidence=AK104282 (DDBJ%2C Best hit);ORF_evidence=B0LX55 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);NIAS_FLcDNA=001-006-D08;Expression=AK104282;TENOR=Os06t0485100-01;KEGG=Os06t0485100-01
Chr06	irgsp1_rep	five_prime_UTR	16543296	16543380	.	-	.	Parent=Os06t0485100-01
Chr06	irgsp1_rep	five_prime_UTR	16543182	16543204	.	-	.	Parent=Os06t0485100-01
Chr06	irgsp1_rep	CDS	16542996	16543181	.	-	0	Parent=Os06t0485100-01
Chr06	irgsp1_rep	CDS	16542736	16542901	.	-	0	Parent=Os06t0485100-01
Chr06	irgsp1_rep	CDS	16542382	16542445	.	-	2	Parent=Os06t0485100-01
Chr06	irgsp1_rep	CDS	16540638	16540689	.	-	1	Parent=Os06t0485100-01
Chr06	irgsp1_rep	CDS	16540074	16540217	.	-	0	Parent=Os06t0485100-01
Chr06	irgsp1_rep	CDS	16539550	16539669	.	-	0	Parent=Os06t0485100-01
Chr06	irgsp1_rep	CDS	16538604	16538984	.	-	0	Parent=Os06t0485100-01
Chr06	irgsp1_rep	three_prime_UTR	16538328	16538603	.	-	.	Parent=Os06t0485100-01
Chr06	irgsp1_rep	mRNA	16538108	16543346	.	-	.	ID=Os06t0485100-02;Name=Os06t0485100-02;Locus_id=Os06g0485100;Note=Similar to Homeobox-like resistance.;Transcript_evidence=AK068560 (DDBJ%2C Best hit);ORF_evidence=B0LX55 (UniProt);NIAS_FLcDNA=J013151L16;Expression=AK068560;TENOR=Os06t0485100-02;KEGG=Os06t0485100-02
Chr06	irgsp1_rep	five_prime_UTR	16543296	16543346	.	-	.	Parent=Os06t0485100-02
Chr06	irgsp1_rep	five_prime_UTR	16542996	16543204	.	-	.	Parent=Os06t0485100-02
Chr06	irgsp1_rep	five_prime_UTR	16542736	16542901	.	-	.	Parent=Os06t0485100-02
Chr06	irgsp1_rep	five_prime_UTR	16540698	16542445	.	-	.	Parent=Os06t0485100-02
Chr06	irgsp1_rep	CDS	16540638	16540697	.	-	0	Parent=Os06t0485100-02
Chr06	irgsp1_rep	CDS	16540074	16540217	.	-	0	Parent=Os06t0485100-02
Chr06	irgsp1_rep	CDS	16539550	16539669	.	-	0	Parent=Os06t0485100-02
Chr06	irgsp1_rep	CDS	16538604	16538984	.	-	0	Parent=Os06t0485100-02
Chr06	irgsp1_rep	three_prime_UTR	16538108	16538603	.	-	.	Parent=Os06t0485100-02
Chr06	irgsp1_rep	mRNA	16538133	16543340	.	-	.	ID=Os06t0485100-03;Name=Os06t0485100-03;Locus_id=Os06g0485100;Note=Similar to Homeobox-like resistance.;Transcript_evidence=AK073906 (DDBJ%2C Best hit);ORF_evidence=B0LX55 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);NIAS_FLcDNA=J033073M23;Expression=AK073906;TENOR=Os06t0485100-03;KEGG=Os06t0485100-03
Chr06	irgsp1_rep	five_prime_UTR	16543296	16543340	.	-	.	Parent=Os06t0485100-03
Chr06	irgsp1_rep	five_prime_UTR	16543182	16543204	.	-	.	Parent=Os06t0485100-03
Chr06	irgsp1_rep	CDS	16542996	16543181	.	-	0	Parent=Os06t0485100-03
Chr06	irgsp1_rep	CDS	16542736	16542901	.	-	0	Parent=Os06t0485100-03
Chr06	irgsp1_rep	CDS	16542382	16542445	.	-	2	Parent=Os06t0485100-03
Chr06	irgsp1_rep	CDS	16540638	16540689	.	-	1	Parent=Os06t0485100-03
Chr06	irgsp1_rep	CDS	16540074	16540217	.	-	0	Parent=Os06t0485100-03
Chr06	irgsp1_rep	CDS	16539550	16539669	.	-	0	Parent=Os06t0485100-03
Chr06	irgsp1_rep	CDS	16538604	16538984	.	-	0	Parent=Os06t0485100-03
Chr06	irgsp1_rep	three_prime_UTR	16538133	16538603	.	-	.	Parent=Os06t0485100-03
Chr06	irgsp1_rep	mRNA	16579208	16582947	.	-	.	ID=Os06t0486000-01;Name=Os06t0486000-01;Locus_id=Os06g0486000;Oryzabase Gene Symbol Synonym(s)=OsSTA174%2C RHS10;Oryzabase Gene Name Synonym(s)=rice RHS10 ortholog;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK100169 (DDBJ%2C Best hit);ORF_evidence=E5GBJ3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J023023P10;Oryzabase=19457;Expression=AK100169;TENOR=Os06t0486000-01;KEGG=Os06t0486000-01
Chr06	irgsp1_rep	five_prime_UTR	16582795	16582947	.	-	.	Parent=Os06t0486000-01
Chr06	irgsp1_rep	CDS	16581783	16582794	.	-	0	Parent=Os06t0486000-01
Chr06	irgsp1_rep	CDS	16581204	16581680	.	-	2	Parent=Os06t0486000-01
Chr06	irgsp1_rep	CDS	16580758	16580844	.	-	2	Parent=Os06t0486000-01
Chr06	irgsp1_rep	CDS	16580578	16580648	.	-	2	Parent=Os06t0486000-01
Chr06	irgsp1_rep	CDS	16580260	16580484	.	-	0	Parent=Os06t0486000-01
Chr06	irgsp1_rep	CDS	16579479	16579853	.	-	0	Parent=Os06t0486000-01
Chr06	irgsp1_rep	three_prime_UTR	16579208	16579478	.	-	.	Parent=Os06t0486000-01
Chr06	irgsp1_rep	mRNA	16596300	16599158	.	+	.	ID=Os06t0486300-00;Name=Os06t0486300-00;Locus_id=Os06g0486300;CGSNL Gene Symbol=MLO_;CGSNL Gene Name=POWDERY-MILDEW-RESISTANCE GENE O_;Oryzabase Gene Symbol Synonym(s)=OsMLO6%2C OsMLO1%2C OsMlo1%2C Mlo%2C OsMlo-1%2C Mlo1%2C MLO6;Oryzabase Gene Name Synonym(s)=powdery-MiLdew-resistance gene O6%2C powdery-MiLdew-resistance gene O1%2C Mildew resistance Locus O-6;Note=Similar to MLO protein homolog 1.;Transcript_evidence=AF361933 (DDBJ);ORF_evidence=Q0DC45 (UniProt);GO=Biological Process: cell death (GO:0008219),Cellular Component: integral to membrane (GO:0016021);InterPro=Mlo-related protein (IPR004326);Oryzabase=9189;TENOR=Os06t0486300-00;KEGG=Os06t0486300-00
Chr06	irgsp1_rep	CDS	16596300	16596437	.	+	0	Parent=Os06t0486300-00
Chr06	irgsp1_rep	CDS	16596582	16596642	.	+	0	Parent=Os06t0486300-00
Chr06	irgsp1_rep	CDS	16596748	16596836	.	+	2	Parent=Os06t0486300-00
Chr06	irgsp1_rep	CDS	16596953	16597027	.	+	0	Parent=Os06t0486300-00
Chr06	irgsp1_rep	CDS	16597137	16597225	.	+	0	Parent=Os06t0486300-00
Chr06	irgsp1_rep	CDS	16597348	16597397	.	+	1	Parent=Os06t0486300-00
Chr06	irgsp1_rep	CDS	16597502	16597542	.	+	2	Parent=Os06t0486300-00
Chr06	irgsp1_rep	CDS	16597671	16597844	.	+	0	Parent=Os06t0486300-00
Chr06	irgsp1_rep	CDS	16597983	16598018	.	+	0	Parent=Os06t0486300-00
Chr06	irgsp1_rep	CDS	16598149	16598277	.	+	0	Parent=Os06t0486300-00
Chr06	irgsp1_rep	CDS	16598693	16599073	.	+	0	Parent=Os06t0486300-00
Chr06	irgsp1_rep	three_prime_UTR	16599074	16599158	.	+	.	Parent=Os06t0486300-00
Chr06	irgsp1_rep	mRNA	16604884	16616223	.	-	.	ID=Os06t0486400-01;Name=Os06t0486400-01;Locus_id=Os06g0486400;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK065283 (DDBJ%2C Best hit);ORF_evidence=A7L4B0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013002M04;Expression=AK065283;TENOR=Os06t0486400-01;KEGG=Os06t0486400-01
Chr06	irgsp1_rep	five_prime_UTR	16615915	16616223	.	-	.	Parent=Os06t0486400-01
Chr06	irgsp1_rep	five_prime_UTR	16614868	16615291	.	-	.	Parent=Os06t0486400-01
Chr06	irgsp1_rep	CDS	16614706	16614867	.	-	0	Parent=Os06t0486400-01
Chr06	irgsp1_rep	CDS	16612416	16612670	.	-	0	Parent=Os06t0486400-01
Chr06	irgsp1_rep	CDS	16611680	16611804	.	-	0	Parent=Os06t0486400-01
Chr06	irgsp1_rep	CDS	16611320	16611364	.	-	1	Parent=Os06t0486400-01
Chr06	irgsp1_rep	CDS	16611150	16611231	.	-	1	Parent=Os06t0486400-01
Chr06	irgsp1_rep	CDS	16610993	16611061	.	-	0	Parent=Os06t0486400-01
Chr06	irgsp1_rep	CDS	16610748	16610918	.	-	0	Parent=Os06t0486400-01
Chr06	irgsp1_rep	CDS	16610609	16610674	.	-	0	Parent=Os06t0486400-01
Chr06	irgsp1_rep	CDS	16609947	16610015	.	-	0	Parent=Os06t0486400-01
Chr06	irgsp1_rep	CDS	16609691	16609822	.	-	0	Parent=Os06t0486400-01
Chr06	irgsp1_rep	CDS	16609515	16609591	.	-	0	Parent=Os06t0486400-01
Chr06	irgsp1_rep	CDS	16608560	16608826	.	-	1	Parent=Os06t0486400-01
Chr06	irgsp1_rep	CDS	16606974	16607062	.	-	1	Parent=Os06t0486400-01
Chr06	irgsp1_rep	CDS	16606755	16606837	.	-	2	Parent=Os06t0486400-01
Chr06	irgsp1_rep	CDS	16605894	16606019	.	-	0	Parent=Os06t0486400-01
Chr06	irgsp1_rep	CDS	16605782	16605824	.	-	0	Parent=Os06t0486400-01
Chr06	irgsp1_rep	CDS	16605654	16605688	.	-	2	Parent=Os06t0486400-01
Chr06	irgsp1_rep	CDS	16605397	16605458	.	-	0	Parent=Os06t0486400-01
Chr06	irgsp1_rep	CDS	16605269	16605320	.	-	1	Parent=Os06t0486400-01
Chr06	irgsp1_rep	CDS	16605107	16605178	.	-	0	Parent=Os06t0486400-01
Chr06	irgsp1_rep	three_prime_UTR	16604884	16605106	.	-	.	Parent=Os06t0486400-01
Chr06	irgsp1_rep	mRNA	16649553	16653244	.	+	.	ID=Os06t0486800-01;Name=Os06t0486800-01;Locus_id=Os06g0486800;CGSNL Gene Symbol=FDH;CGSNL Gene Name=FORMATE DEHYDROGENASE;Oryzabase Gene Symbol Synonym(s)=OsFDH%2C FDH 1%2C FDH1%2C OsFDH1;Oryzabase Gene Name Synonym(s)=Formate dehydrogenase 1%2C mitochondrial%2C NAD-dependent formate dehydrogenase 1%2C Nad-dependent formate dehydrogenase;Note=Similar to Formate dehydrogenase%2C mitochondrial precursor (EC 1.2.1.2) (NAD- dependent formate dehydrogenase) (FDH).;Transcript_evidence=AK065872 (DDBJ%2C Best hit),AK104788 (DDBJ%2C Best hit);ORF_evidence=B6TRR5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: cofactor binding (GO:0048037),Molecular Function: NAD binding (GO:0051287);InterPro=D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain (IPR006139),D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding (IPR006140),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013048A01,001-039-E04;Oryzabase=8315;TENOR=Os06t0486800-01
Chr06	irgsp1_rep	five_prime_UTR	16649553	16649647	.	+	.	Parent=Os06t0486800-01
Chr06	irgsp1_rep	CDS	16649648	16649713	.	+	0	Parent=Os06t0486800-01
Chr06	irgsp1_rep	CDS	16650126	16650297	.	+	0	Parent=Os06t0486800-01
Chr06	irgsp1_rep	CDS	16650937	16651477	.	+	2	Parent=Os06t0486800-01
Chr06	irgsp1_rep	CDS	16651564	16651688	.	+	1	Parent=Os06t0486800-01
Chr06	irgsp1_rep	CDS	16652133	16652245	.	+	2	Parent=Os06t0486800-01
Chr06	irgsp1_rep	CDS	16652710	16652823	.	+	0	Parent=Os06t0486800-01
Chr06	irgsp1_rep	three_prime_UTR	16652824	16653244	.	+	.	Parent=Os06t0486800-01
Chr06	irgsp1_rep	mRNA	16676478	16683024	.	+	.	ID=Os06t0486900-01;Name=Os06t0486900-01;Locus_id=Os06g0486900;CGSNL Gene Symbol=FDH2;Oryzabase Gene Symbol Synonym(s)=OsFDH2;Note=Similar to Formate dehydrogenase%2C mitochondrial precursor (EC 1.2.1.2) (NAD- dependent formate dehydrogenase) (FDH).;Transcript_evidence=AK064610 (DDBJ%2C Best hit);ORF_evidence=B6TRR5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: cofactor binding (GO:0048037),Molecular Function: NAD binding (GO:0051287);InterPro=D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain (IPR006139),D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding (IPR006140),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=002-113-B06;Oryzabase=18133;Expression=AK064610;TENOR=Os06t0486900-01;KEGG=Os06t0486900-01 (EC:1.2.1.2)
Chr06	irgsp1_rep	five_prime_UTR	16676478	16677025	.	+	.	Parent=Os06t0486900-01
Chr06	irgsp1_rep	CDS	16677026	16677097	.	+	0	Parent=Os06t0486900-01
Chr06	irgsp1_rep	CDS	16679940	16680111	.	+	0	Parent=Os06t0486900-01
Chr06	irgsp1_rep	CDS	16680766	16681034	.	+	2	Parent=Os06t0486900-01
Chr06	irgsp1_rep	CDS	16681190	16681461	.	+	0	Parent=Os06t0486900-01
Chr06	irgsp1_rep	CDS	16681554	16681678	.	+	1	Parent=Os06t0486900-01
Chr06	irgsp1_rep	CDS	16681997	16682109	.	+	2	Parent=Os06t0486900-01
Chr06	irgsp1_rep	CDS	16682724	16682837	.	+	0	Parent=Os06t0486900-01
Chr06	irgsp1_rep	three_prime_UTR	16682838	16683024	.	+	.	Parent=Os06t0486900-01
Chr06	irgsp1_rep	mRNA	16693757	16694391	.	-	.	ID=Os06t0487300-01;Name=Os06t0487300-01;Locus_id=Os06g0487300;Note=Hypothetical protein.;Transcript_evidence=AK108507 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-143-H12;Expression=AK108507;TENOR=Os06t0487300-01;KEGG=Os06t0487300-01
Chr06	irgsp1_rep	five_prime_UTR	16694367	16694391	.	-	.	Parent=Os06t0487300-01
Chr06	irgsp1_rep	CDS	16694121	16694366	.	-	0	Parent=Os06t0487300-01
Chr06	irgsp1_rep	three_prime_UTR	16693757	16694120	.	-	.	Parent=Os06t0487300-01
Chr06	irgsp1_rep	mRNA	16693769	16694662	.	+	.	ID=Os06t0487380-01;Name=Os06t0487380-01;Locus_id=Os06g0487380;Note=Hypothetical gene.;Transcript_evidence=AK242115 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J075146G22;TENOR=Os06t0487380-01;KEGG=Os06t0487380-01
Chr06	irgsp1_rep	five_prime_UTR	16693769	16693770	.	+	.	Parent=Os06t0487380-01
Chr06	irgsp1_rep	CDS	16693771	16694037	.	+	0	Parent=Os06t0487380-01
Chr06	irgsp1_rep	three_prime_UTR	16694038	16694662	.	+	.	Parent=Os06t0487380-01
Chr06	irgsp1_rep	mRNA	16705088	16705640	.	+	.	ID=Os06t0487620-01;Name=Os06t0487620-01;Locus_id=Os06g0487620;Note=Conserved hypothetical protein.;Transcript_evidence=AK241120 (DDBJ%2C Best hit);ORF_evidence=NP_001174796.1 (RefSeq);NIAS_FLcDNA=J065094G07;TENOR=Os06t0487620-01;KEGG=Os06t0487620-01
Chr06	irgsp1_rep	five_prime_UTR	16705088	16705202	.	+	.	Parent=Os06t0487620-01
Chr06	irgsp1_rep	CDS	16705203	16705466	.	+	0	Parent=Os06t0487620-01
Chr06	irgsp1_rep	three_prime_UTR	16705467	16705640	.	+	.	Parent=Os06t0487620-01
Chr06	irgsp1_rep	mRNA	16719026	16719110	.	-	.	ID=Os06t0487660-00;Name=Os06t0487660-00;Locus_id=Os06g0487660;Note=Non-protein coding transcript.;Transcript_evidence=AY131234 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0487660-00
Chr06	irgsp1_rep	exon	16719026	16719110	.	-	.	Parent=Os06t0487660-00
Chr06	irgsp1_rep	mRNA	16719409	16719801	.	+	.	ID=Os06t0487700-00;Name=Os06t0487700-00;Locus_id=Os06g0487700;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A3BBW7 (UniProt);TENOR=Os06t0487700-00;KEGG=Os06t0487700-00
Chr06	irgsp1_rep	CDS	16719409	16719801	.	+	0	Parent=Os06t0487700-00
Chr06	irgsp1_rep	mRNA	16732927	16745662	.	-	.	ID=Os06t0487900-01;Name=Os06t0487900-01;Locus_id=Os06g0487900;RAP-DB Gene Symbol Synonym(s)=OTS1%2C OsOTS1;RAP-DB Gene Name Synonym(s)=OVERLY TOLERANT TO SALT1;CGSNL Gene Symbol=OTS1;CGSNL Gene Name=OVERLY TOLERANT TO SALT1;Oryzabase Gene Symbol Synonym(s)=OsOTS1;Oryzabase Gene Name Synonym(s)=Overly Tolerant to Salt 1;Note=SUMO (Small Ubiquitin-like Modifier) Protease%2C Salt tolerance;Transcript_evidence=AK064330;ORF_evidence=Q67VX6;GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Ulp1 protease family%2C C-terminal catalytic domain (IPR003653);NIAS_FLcDNA=002-107-F11;Manual Curation=April 1%2C 2016;Literature_PMID=26869703;Oryzabase=20932;Expression=AK064330;TENOR=Os06t0487900-01;KEGG=Os06t0487900-01
Chr06	irgsp1_rep	five_prime_UTR	16745551	16745662	.	-	.	Parent=Os06t0487900-01
Chr06	irgsp1_rep	CDS	16745344	16745550	.	-	0	Parent=Os06t0487900-01
Chr06	irgsp1_rep	CDS	16744778	16744829	.	-	0	Parent=Os06t0487900-01
Chr06	irgsp1_rep	CDS	16743866	16743924	.	-	2	Parent=Os06t0487900-01
Chr06	irgsp1_rep	CDS	16743559	16743797	.	-	0	Parent=Os06t0487900-01
Chr06	irgsp1_rep	CDS	16742726	16742774	.	-	1	Parent=Os06t0487900-01
Chr06	irgsp1_rep	CDS	16740421	16740494	.	-	0	Parent=Os06t0487900-01
Chr06	irgsp1_rep	CDS	16739496	16739525	.	-	1	Parent=Os06t0487900-01
Chr06	irgsp1_rep	CDS	16739314	16739409	.	-	1	Parent=Os06t0487900-01
Chr06	irgsp1_rep	CDS	16738061	16738160	.	-	1	Parent=Os06t0487900-01
Chr06	irgsp1_rep	CDS	16736965	16737059	.	-	0	Parent=Os06t0487900-01
Chr06	irgsp1_rep	CDS	16736650	16736772	.	-	1	Parent=Os06t0487900-01
Chr06	irgsp1_rep	CDS	16736212	16736326	.	-	1	Parent=Os06t0487900-01
Chr06	irgsp1_rep	CDS	16733814	16733924	.	-	0	Parent=Os06t0487900-01
Chr06	irgsp1_rep	CDS	16733475	16733693	.	-	0	Parent=Os06t0487900-01
Chr06	irgsp1_rep	three_prime_UTR	16732927	16733474	.	-	.	Parent=Os06t0487900-01
Chr06	irgsp1_rep	mRNA	16732927	16745608	.	-	.	ID=Os06t0487900-02;Name=Os06t0487900-02;Locus_id=Os06g0487900;CGSNL Gene Symbol=OTS1;CGSNL Gene Name=OVERLY TOLERANT TO SALT1;Oryzabase Gene Symbol Synonym(s)=OsOTS1;Oryzabase Gene Name Synonym(s)=Overly Tolerant to Salt 1;Note=Hypothetical conserved gene.;Transcript_evidence=AK121622 (DDBJ%2C Best hit);ORF_evidence=B8B2F9 (UniProt);NIAS_FLcDNA=J033045C16;Oryzabase=20932;Expression=AK121622;TENOR=Os06t0487900-02;KEGG=Os06t0487900-02
Chr06	irgsp1_rep	five_prime_UTR	16745551	16745608	.	-	.	Parent=Os06t0487900-02
Chr06	irgsp1_rep	CDS	16745344	16745550	.	-	0	Parent=Os06t0487900-02
Chr06	irgsp1_rep	CDS	16744778	16744829	.	-	0	Parent=Os06t0487900-02
Chr06	irgsp1_rep	CDS	16743866	16743924	.	-	2	Parent=Os06t0487900-02
Chr06	irgsp1_rep	CDS	16743698	16743797	.	-	0	Parent=Os06t0487900-02
Chr06	irgsp1_rep	CDS	16743559	16743628	.	-	2	Parent=Os06t0487900-02
Chr06	irgsp1_rep	CDS	16742678	16742774	.	-	1	Parent=Os06t0487900-02
Chr06	irgsp1_rep	three_prime_UTR	16740421	16742677	.	-	.	Parent=Os06t0487900-02
Chr06	irgsp1_rep	three_prime_UTR	16739496	16739525	.	-	.	Parent=Os06t0487900-02
Chr06	irgsp1_rep	three_prime_UTR	16739314	16739409	.	-	.	Parent=Os06t0487900-02
Chr06	irgsp1_rep	three_prime_UTR	16738119	16738160	.	-	.	Parent=Os06t0487900-02
Chr06	irgsp1_rep	three_prime_UTR	16736965	16737058	.	-	.	Parent=Os06t0487900-02
Chr06	irgsp1_rep	three_prime_UTR	16736650	16736772	.	-	.	Parent=Os06t0487900-02
Chr06	irgsp1_rep	three_prime_UTR	16736212	16736326	.	-	.	Parent=Os06t0487900-02
Chr06	irgsp1_rep	three_prime_UTR	16733814	16733924	.	-	.	Parent=Os06t0487900-02
Chr06	irgsp1_rep	three_prime_UTR	16732927	16733693	.	-	.	Parent=Os06t0487900-02
Chr06	irgsp1_rep	mRNA	16763476	16768965	.	+	.	ID=Os06t0488050-00;Name=Os06t0488050-00;Locus_id=Os06g0488050;Oryzabase Gene Name Synonym(s)=Extensin family protein;Note=Similar to Protein kinase family protein.;Transcript_evidence=BT068448 (DDBJ);ORF_evidence=Q1EP18 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=21936;TENOR=Os06t0488050-00;KEGG=Os06t0488050-00
Chr06	irgsp1_rep	CDS	16763476	16764838	.	+	0	Parent=Os06t0488050-00
Chr06	irgsp1_rep	CDS	16764912	16764998	.	+	2	Parent=Os06t0488050-00
Chr06	irgsp1_rep	CDS	16765103	16765173	.	+	2	Parent=Os06t0488050-00
Chr06	irgsp1_rep	CDS	16765290	16765366	.	+	0	Parent=Os06t0488050-00
Chr06	irgsp1_rep	CDS	16765467	16765614	.	+	1	Parent=Os06t0488050-00
Chr06	irgsp1_rep	CDS	16768493	16768654	.	+	0	Parent=Os06t0488050-00
Chr06	irgsp1_rep	CDS	16768770	16768961	.	+	0	Parent=Os06t0488050-00
Chr06	irgsp1_rep	three_prime_UTR	16768962	16768965	.	+	.	Parent=Os06t0488050-00
Chr06	irgsp1_rep	mRNA	16763594	16768949	.	-	.	ID=Os06t0488125-00;Name=Os06t0488125-00;Locus_id=Os06g0488125;Note=Hypothetical protein.;Transcript_evidence=tplb0028p02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0488125-00
Chr06	irgsp1_rep	five_prime_UTR	16768796	16768949	.	-	.	Parent=Os06t0488125-00
Chr06	irgsp1_rep	five_prime_UTR	16768511	16768679	.	-	.	Parent=Os06t0488125-00
Chr06	irgsp1_rep	five_prime_UTR	16765412	16765629	.	-	.	Parent=Os06t0488125-00
Chr06	irgsp1_rep	five_prime_UTR	16765085	16765181	.	-	.	Parent=Os06t0488125-00
Chr06	irgsp1_rep	five_prime_UTR	16764935	16764981	.	-	.	Parent=Os06t0488125-00
Chr06	irgsp1_rep	five_prime_UTR	16764838	16764859	.	-	.	Parent=Os06t0488125-00
Chr06	irgsp1_rep	CDS	16764450	16764837	.	-	0	Parent=Os06t0488125-00
Chr06	irgsp1_rep	CDS	16763935	16764353	.	-	2	Parent=Os06t0488125-00
Chr06	irgsp1_rep	three_prime_UTR	16763594	16763934	.	-	.	Parent=Os06t0488125-00
Chr06	irgsp1_rep	mRNA	16774133	16785391	.	+	.	ID=Os06t0488200-01;Name=Os06t0488200-01;Locus_id=Os06g0488200;Note=Similar to Myosin heavy chain (Fragment).;Transcript_evidence=AK069690 (DDBJ%2C Best hit);ORF_evidence=NP_175858.1 (RefSeq);GO=Cellular Component: myosin complex (GO:0016459),Molecular Function: motor activity (GO:0003774),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=IQ motif%2C EF-hand binding site (IPR000048),Myosin head%2C motor domain (IPR001609),Dilute (IPR002710),Myosin%2C N-terminal%2C SH3-like (IPR004009),Dil domain (IPR018444);NIAS_FLcDNA=J023027A17;Oryzabase=23567;Expression=AK069690;TENOR=Os06t0488200-01;KEGG=Os06t0488200-01
Chr06	irgsp1_rep	five_prime_UTR	16774133	16774289	.	+	.	Parent=Os06t0488200-01
Chr06	irgsp1_rep	CDS	16774290	16774292	.	+	0	Parent=Os06t0488200-01
Chr06	irgsp1_rep	CDS	16774608	16774736	.	+	0	Parent=Os06t0488200-01
Chr06	irgsp1_rep	CDS	16774810	16774953	.	+	0	Parent=Os06t0488200-01
Chr06	irgsp1_rep	CDS	16775038	16775183	.	+	0	Parent=Os06t0488200-01
Chr06	irgsp1_rep	CDS	16775282	16775438	.	+	1	Parent=Os06t0488200-01
Chr06	irgsp1_rep	CDS	16775536	16775594	.	+	0	Parent=Os06t0488200-01
Chr06	irgsp1_rep	CDS	16775727	16775886	.	+	1	Parent=Os06t0488200-01
Chr06	irgsp1_rep	CDS	16775994	16776143	.	+	0	Parent=Os06t0488200-01
Chr06	irgsp1_rep	CDS	16776238	16776374	.	+	0	Parent=Os06t0488200-01
Chr06	irgsp1_rep	CDS	16776470	16776616	.	+	1	Parent=Os06t0488200-01
Chr06	irgsp1_rep	CDS	16776701	16776802	.	+	1	Parent=Os06t0488200-01
Chr06	irgsp1_rep	CDS	16776887	16776944	.	+	1	Parent=Os06t0488200-01
Chr06	irgsp1_rep	CDS	16777040	16777141	.	+	0	Parent=Os06t0488200-01
Chr06	irgsp1_rep	CDS	16777874	16777911	.	+	0	Parent=Os06t0488200-01
Chr06	irgsp1_rep	CDS	16778013	16778139	.	+	1	Parent=Os06t0488200-01
Chr06	irgsp1_rep	CDS	16778220	16778390	.	+	0	Parent=Os06t0488200-01
Chr06	irgsp1_rep	CDS	16778479	16778610	.	+	0	Parent=Os06t0488200-01
Chr06	irgsp1_rep	CDS	16778722	16778831	.	+	0	Parent=Os06t0488200-01
Chr06	irgsp1_rep	CDS	16779011	16779071	.	+	1	Parent=Os06t0488200-01
Chr06	irgsp1_rep	CDS	16779176	16779353	.	+	0	Parent=Os06t0488200-01
Chr06	irgsp1_rep	CDS	16779438	16779643	.	+	2	Parent=Os06t0488200-01
Chr06	irgsp1_rep	CDS	16779735	16779854	.	+	0	Parent=Os06t0488200-01
Chr06	irgsp1_rep	CDS	16780048	16780146	.	+	0	Parent=Os06t0488200-01
Chr06	irgsp1_rep	CDS	16780297	16780515	.	+	0	Parent=Os06t0488200-01
Chr06	irgsp1_rep	CDS	16780846	16780985	.	+	0	Parent=Os06t0488200-01
Chr06	irgsp1_rep	CDS	16781320	16781431	.	+	1	Parent=Os06t0488200-01
Chr06	irgsp1_rep	CDS	16781520	16781570	.	+	0	Parent=Os06t0488200-01
Chr06	irgsp1_rep	CDS	16781654	16781734	.	+	0	Parent=Os06t0488200-01
Chr06	irgsp1_rep	CDS	16781828	16781998	.	+	0	Parent=Os06t0488200-01
Chr06	irgsp1_rep	CDS	16782079	16782234	.	+	0	Parent=Os06t0488200-01
Chr06	irgsp1_rep	CDS	16782319	16782525	.	+	0	Parent=Os06t0488200-01
Chr06	irgsp1_rep	CDS	16782802	16782945	.	+	0	Parent=Os06t0488200-01
Chr06	irgsp1_rep	CDS	16783290	16783360	.	+	0	Parent=Os06t0488200-01
Chr06	irgsp1_rep	CDS	16783460	16783559	.	+	1	Parent=Os06t0488200-01
Chr06	irgsp1_rep	CDS	16783928	16783984	.	+	0	Parent=Os06t0488200-01
Chr06	irgsp1_rep	CDS	16784301	16784357	.	+	0	Parent=Os06t0488200-01
Chr06	irgsp1_rep	CDS	16784453	16784533	.	+	0	Parent=Os06t0488200-01
Chr06	irgsp1_rep	CDS	16784612	16784694	.	+	0	Parent=Os06t0488200-01
Chr06	irgsp1_rep	CDS	16784786	16784909	.	+	1	Parent=Os06t0488200-01
Chr06	irgsp1_rep	three_prime_UTR	16784910	16785391	.	+	.	Parent=Os06t0488200-01
Chr06	irgsp1_rep	mRNA	16775319	16785410	.	+	.	ID=Os06t0488200-02;Name=Os06t0488200-02;Locus_id=Os06g0488200;Note=Similar to XIC (Myosin-like protein XIC)%3B motor/ protein binding.;Transcript_evidence=AK120774 (DDBJ%2C Best hit);ORF_evidence=NP_175858.1 (RefSeq);GO=Cellular Component: myosin complex (GO:0016459),Molecular Function: motor activity (GO:0003774),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=IQ motif%2C EF-hand binding site (IPR000048),Myosin head%2C motor domain (IPR001609),Dilute (IPR002710),Dil domain (IPR018444);NIAS_FLcDNA=J023008O03;Oryzabase=23567;Expression=AK120774;TENOR=Os06t0488200-02;KEGG=Os06t0488200-02
Chr06	irgsp1_rep	CDS	16775319	16775438	.	+	0	Parent=Os06t0488200-02
Chr06	irgsp1_rep	CDS	16775536	16775594	.	+	0	Parent=Os06t0488200-02
Chr06	irgsp1_rep	CDS	16775727	16775886	.	+	1	Parent=Os06t0488200-02
Chr06	irgsp1_rep	CDS	16775994	16776143	.	+	0	Parent=Os06t0488200-02
Chr06	irgsp1_rep	CDS	16776238	16776374	.	+	0	Parent=Os06t0488200-02
Chr06	irgsp1_rep	CDS	16776470	16776616	.	+	1	Parent=Os06t0488200-02
Chr06	irgsp1_rep	CDS	16776701	16776802	.	+	1	Parent=Os06t0488200-02
Chr06	irgsp1_rep	CDS	16776887	16776944	.	+	1	Parent=Os06t0488200-02
Chr06	irgsp1_rep	CDS	16777040	16777141	.	+	0	Parent=Os06t0488200-02
Chr06	irgsp1_rep	CDS	16777874	16777911	.	+	0	Parent=Os06t0488200-02
Chr06	irgsp1_rep	CDS	16778013	16778139	.	+	1	Parent=Os06t0488200-02
Chr06	irgsp1_rep	CDS	16778220	16778390	.	+	0	Parent=Os06t0488200-02
Chr06	irgsp1_rep	CDS	16778479	16778610	.	+	0	Parent=Os06t0488200-02
Chr06	irgsp1_rep	CDS	16778722	16778831	.	+	0	Parent=Os06t0488200-02
Chr06	irgsp1_rep	CDS	16779011	16779071	.	+	1	Parent=Os06t0488200-02
Chr06	irgsp1_rep	CDS	16779176	16779353	.	+	0	Parent=Os06t0488200-02
Chr06	irgsp1_rep	CDS	16779438	16779643	.	+	2	Parent=Os06t0488200-02
Chr06	irgsp1_rep	CDS	16779735	16779854	.	+	0	Parent=Os06t0488200-02
Chr06	irgsp1_rep	CDS	16780048	16780146	.	+	0	Parent=Os06t0488200-02
Chr06	irgsp1_rep	CDS	16780297	16780515	.	+	0	Parent=Os06t0488200-02
Chr06	irgsp1_rep	CDS	16780846	16780985	.	+	0	Parent=Os06t0488200-02
Chr06	irgsp1_rep	CDS	16781320	16781431	.	+	1	Parent=Os06t0488200-02
Chr06	irgsp1_rep	CDS	16781520	16781570	.	+	0	Parent=Os06t0488200-02
Chr06	irgsp1_rep	CDS	16781654	16781734	.	+	0	Parent=Os06t0488200-02
Chr06	irgsp1_rep	CDS	16781828	16781998	.	+	0	Parent=Os06t0488200-02
Chr06	irgsp1_rep	CDS	16782079	16782234	.	+	0	Parent=Os06t0488200-02
Chr06	irgsp1_rep	CDS	16782319	16782525	.	+	0	Parent=Os06t0488200-02
Chr06	irgsp1_rep	CDS	16782802	16782945	.	+	0	Parent=Os06t0488200-02
Chr06	irgsp1_rep	CDS	16783290	16783360	.	+	0	Parent=Os06t0488200-02
Chr06	irgsp1_rep	CDS	16783460	16783559	.	+	1	Parent=Os06t0488200-02
Chr06	irgsp1_rep	CDS	16783928	16783984	.	+	0	Parent=Os06t0488200-02
Chr06	irgsp1_rep	CDS	16784301	16784357	.	+	0	Parent=Os06t0488200-02
Chr06	irgsp1_rep	CDS	16784453	16784533	.	+	0	Parent=Os06t0488200-02
Chr06	irgsp1_rep	CDS	16784612	16784694	.	+	0	Parent=Os06t0488200-02
Chr06	irgsp1_rep	CDS	16784786	16784909	.	+	1	Parent=Os06t0488200-02
Chr06	irgsp1_rep	three_prime_UTR	16784910	16785410	.	+	.	Parent=Os06t0488200-02
Chr06	irgsp1_rep	mRNA	16793652	16795663	.	-	.	ID=Os06t0488600-01;Name=Os06t0488600-01;Locus_id=Os06g0488600;Note=Similar to Potential phospholipid-transporting ATPase 7 (EC 3.6.3.1) (Aminophospholipid flippase 7).;Transcript_evidence=AK058968 (DDBJ%2C Best hit);ORF_evidence=XP_002318557.1 (RefSeq);InterPro=HAD-like domain (IPR023214);NIAS_FLcDNA=001-020-C10;Expression=AK058968;TENOR=Os06t0488600-01;KEGG=Os06t0488600-01 (EC:3.6.3.1)
Chr06	irgsp1_rep	five_prime_UTR	16795662	16795663	.	-	.	Parent=Os06t0488600-01
Chr06	irgsp1_rep	CDS	16795641	16795661	.	-	0	Parent=Os06t0488600-01
Chr06	irgsp1_rep	CDS	16795439	16795537	.	-	0	Parent=Os06t0488600-01
Chr06	irgsp1_rep	CDS	16795173	16795364	.	-	0	Parent=Os06t0488600-01
Chr06	irgsp1_rep	CDS	16794083	16794730	.	-	0	Parent=Os06t0488600-01
Chr06	irgsp1_rep	three_prime_UTR	16793652	16794082	.	-	.	Parent=Os06t0488600-01
Chr06	irgsp1_rep	mRNA	16825601	16836194	.	-	.	ID=Os06t0489200-01;Name=Os06t0489200-01;Locus_id=Os06g0489200;Note=Protein of unknown function DUF1604 domain containing protein.;Transcript_evidence=AK103574 (DDBJ%2C Best hit);ORF_evidence=B8B2G4 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723);InterPro=SWAP/Surp (IPR000061),D111/G-patch (IPR000467),Domain of unknown function DUF1604 (IPR011666);NIAS_FLcDNA=J033132P04;Expression=AK103574;TENOR=Os06t0489200-01;KEGG=Os06t0489200-01
Chr06	irgsp1_rep	five_prime_UTR	16836068	16836194	.	-	.	Parent=Os06t0489200-01
Chr06	irgsp1_rep	CDS	16835930	16836067	.	-	0	Parent=Os06t0489200-01
Chr06	irgsp1_rep	CDS	16835191	16835281	.	-	0	Parent=Os06t0489200-01
Chr06	irgsp1_rep	CDS	16835001	16835095	.	-	2	Parent=Os06t0489200-01
Chr06	irgsp1_rep	CDS	16833377	16833480	.	-	0	Parent=Os06t0489200-01
Chr06	irgsp1_rep	CDS	16832958	16833019	.	-	1	Parent=Os06t0489200-01
Chr06	irgsp1_rep	CDS	16832790	16832864	.	-	2	Parent=Os06t0489200-01
Chr06	irgsp1_rep	CDS	16832318	16832466	.	-	2	Parent=Os06t0489200-01
Chr06	irgsp1_rep	CDS	16831777	16831852	.	-	0	Parent=Os06t0489200-01
Chr06	irgsp1_rep	CDS	16831627	16831707	.	-	2	Parent=Os06t0489200-01
Chr06	irgsp1_rep	CDS	16831283	16831360	.	-	2	Parent=Os06t0489200-01
Chr06	irgsp1_rep	CDS	16830936	16831074	.	-	2	Parent=Os06t0489200-01
Chr06	irgsp1_rep	CDS	16829956	16830439	.	-	1	Parent=Os06t0489200-01
Chr06	irgsp1_rep	CDS	16829554	16829835	.	-	0	Parent=Os06t0489200-01
Chr06	irgsp1_rep	CDS	16829365	16829481	.	-	0	Parent=Os06t0489200-01
Chr06	irgsp1_rep	CDS	16828259	16828465	.	-	0	Parent=Os06t0489200-01
Chr06	irgsp1_rep	CDS	16826081	16826857	.	-	0	Parent=Os06t0489200-01
Chr06	irgsp1_rep	three_prime_UTR	16825601	16826080	.	-	.	Parent=Os06t0489200-01
Chr06	irgsp1_rep	mRNA	16852004	16858593	.	+	.	ID=Os06t0489500-01;Name=Os06t0489500-01;Locus_id=Os06g0489500;Note=CMP/dCMP deaminase%2C zinc-binding domain containing protein.;Transcript_evidence=AK120595 (DDBJ%2C Best hit);ORF_evidence=A2YD38 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: hydrolase activity (GO:0016787);InterPro=CMP/dCMP deaminase%2C zinc-binding (IPR002125),Cytidine deaminase-like (IPR016193);NIAS_FLcDNA=J013147K17;Expression=AK120595;TENOR=Os06t0489500-01;KEGG=Os06t0489500-01
Chr06	irgsp1_rep	five_prime_UTR	16852004	16852072	.	+	.	Parent=Os06t0489500-01
Chr06	irgsp1_rep	CDS	16852073	16856358	.	+	0	Parent=Os06t0489500-01
Chr06	irgsp1_rep	CDS	16856444	16856531	.	+	1	Parent=Os06t0489500-01
Chr06	irgsp1_rep	CDS	16856968	16857095	.	+	0	Parent=Os06t0489500-01
Chr06	irgsp1_rep	CDS	16858153	16858423	.	+	1	Parent=Os06t0489500-01
Chr06	irgsp1_rep	three_prime_UTR	16858424	16858593	.	+	.	Parent=Os06t0489500-01
Chr06	irgsp1_rep	mRNA	16877329	16878690	.	+	.	ID=Os06t0489900-00;Name=Os06t0489900-00;Locus_id=Os06g0489900;Note=Domain of unknown function DUF1618 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q656D5 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);TENOR=Os06t0489900-00
Chr06	irgsp1_rep	CDS	16877329	16878690	.	+	0	Parent=Os06t0489900-00
Chr06	irgsp1_rep	mRNA	16879618	16881668	.	-	.	ID=Os06t0490000-01;Name=Os06t0490000-01;Locus_id=Os06g0490000;Note=Similar to DIMETHYLADENOSINE TRANSFERASE.;Transcript_evidence=AK105534 (DDBJ%2C Best hit);ORF_evidence=B6TPK7 (UniProt);GO=Biological Process: rRNA modification (GO:0000154),Molecular Function: rRNA (adenine-N6%2CN6-)-dimethyltransferase activity (GO:0000179),Molecular Function: rRNA methyltransferase activity (GO:0008649);InterPro=Ribosomal RNA adenine methylase transferase (IPR001737);NIAS_FLcDNA=001-127-H01;Expression=AK105534;TENOR=Os06t0490000-01;KEGG=Os06t0490000-01 (EC:2.1.1.182)
Chr06	irgsp1_rep	five_prime_UTR	16881390	16881668	.	-	.	Parent=Os06t0490000-01
Chr06	irgsp1_rep	CDS	16881081	16881389	.	-	0	Parent=Os06t0490000-01
Chr06	irgsp1_rep	three_prime_UTR	16880992	16881080	.	-	.	Parent=Os06t0490000-01
Chr06	irgsp1_rep	three_prime_UTR	16879618	16880879	.	-	.	Parent=Os06t0490000-01
Chr06	irgsp1_rep	mRNA	16887143	16888459	.	-	.	ID=Os06t0490200-01;Name=Os06t0490200-01;Locus_id=Os06g0490200;Note=Conserved hypothetical protein.;Transcript_evidence=AK069417 (DDBJ%2C Best hit);ORF_evidence=A2YD42 (UniProt);NIAS_FLcDNA=J023019O03;TENOR=Os06t0490200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	16887921	16888459	.	-	.	Parent=Os06t0490200-01
Chr06	irgsp1_rep	CDS	16887832	16887920	.	-	0	Parent=Os06t0490200-01
Chr06	irgsp1_rep	CDS	16887730	16887730	.	-	1	Parent=Os06t0490200-01
Chr06	irgsp1_rep	three_prime_UTR	16887143	16887729	.	-	.	Parent=Os06t0490200-01
Chr06	irgsp1_rep	mRNA	16886792	16888435	.	-	.	ID=Os06t0490200-02;Name=Os06t0490200-02;Locus_id=Os06g0490200;Note=Conserved hypothetical protein.;Transcript_evidence=AK103613 (DDBJ%2C Best hit);ORF_evidence=A2YD42 (UniProt);NIAS_FLcDNA=J033133K06;TENOR=Os06t0490200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	16887921	16888435	.	-	.	Parent=Os06t0490200-02
Chr06	irgsp1_rep	CDS	16887832	16887920	.	-	0	Parent=Os06t0490200-02
Chr06	irgsp1_rep	CDS	16887730	16887730	.	-	1	Parent=Os06t0490200-02
Chr06	irgsp1_rep	three_prime_UTR	16886792	16887729	.	-	.	Parent=Os06t0490200-02
Chr06	irgsp1_rep	mRNA	16886792	16888373	.	-	.	ID=Os06t0490200-03;Name=Os06t0490200-03;Locus_id=Os06g0490200;Note=Conserved hypothetical protein.;Transcript_evidence=AK105728 (DDBJ%2C Best hit);ORF_evidence=A2YD42 (UniProt);NIAS_FLcDNA=001-201-G12;TENOR=Os06t0490200-03
Chr06	irgsp1_rep	five_prime_UTR	16887921	16888373	.	-	.	Parent=Os06t0490200-03
Chr06	irgsp1_rep	CDS	16887832	16887920	.	-	0	Parent=Os06t0490200-03
Chr06	irgsp1_rep	CDS	16887730	16887730	.	-	1	Parent=Os06t0490200-03
Chr06	irgsp1_rep	three_prime_UTR	16886792	16887729	.	-	.	Parent=Os06t0490200-03
Chr06	irgsp1_rep	mRNA	16896478	16897774	.	+	.	ID=Os06t0490400-00;Name=Os06t0490400-00;Locus_id=Os06g0490400;Oryzabase Gene Symbol Synonym(s)=prx80;Oryzabase Gene Name Synonym(s)=class III peroxidase 80;Note=Similar to Class III peroxidase 80.;Transcript_evidence=FP093172 (DDBJ);ORF_evidence=Q5U1L3 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);Oryzabase=14603;TENOR=Os06t0490400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	16896478	16896514	.	+	.	Parent=Os06t0490400-00
Chr06	irgsp1_rep	CDS	16896515	16896721	.	+	0	Parent=Os06t0490400-00
Chr06	irgsp1_rep	CDS	16896894	16897661	.	+	0	Parent=Os06t0490400-00
Chr06	irgsp1_rep	three_prime_UTR	16897662	16897774	.	+	.	Parent=Os06t0490400-00
Chr06	irgsp1_rep	mRNA	16910985	16916624	.	+	.	ID=Os06t0490700-01;Name=Os06t0490700-01;Locus_id=Os06g0490700;Note=Conserved hypothetical protein.;Transcript_evidence=AK071337 (DDBJ%2C Best hit);ORF_evidence=B9FZ93 (UniProt);NIAS_FLcDNA=J023090P05;Expression=AK071337;TENOR=Os06t0490700-01;KEGG=Os06t0490700-01
Chr06	irgsp1_rep	five_prime_UTR	16910985	16911336	.	+	.	Parent=Os06t0490700-01
Chr06	irgsp1_rep	five_prime_UTR	16912493	16912536	.	+	.	Parent=Os06t0490700-01
Chr06	irgsp1_rep	CDS	16912537	16912587	.	+	0	Parent=Os06t0490700-01
Chr06	irgsp1_rep	CDS	16912692	16912928	.	+	0	Parent=Os06t0490700-01
Chr06	irgsp1_rep	CDS	16913024	16913194	.	+	0	Parent=Os06t0490700-01
Chr06	irgsp1_rep	CDS	16913281	16913394	.	+	0	Parent=Os06t0490700-01
Chr06	irgsp1_rep	three_prime_UTR	16913395	16914848	.	+	.	Parent=Os06t0490700-01
Chr06	irgsp1_rep	three_prime_UTR	16915400	16915448	.	+	.	Parent=Os06t0490700-01
Chr06	irgsp1_rep	three_prime_UTR	16916316	16916624	.	+	.	Parent=Os06t0490700-01
Chr06	irgsp1_rep	mRNA	16913054	16916624	.	+	.	ID=Os06t0490700-02;Name=Os06t0490700-02;Locus_id=Os06g0490700;Note=Hypothetical conserved gene.;Transcript_evidence=AK105159 (DDBJ%2C Best hit);ORF_evidence=B8B2V9 (UniProt);NIAS_FLcDNA=001-104-B01;Expression=AK105159;TENOR=Os06t0490700-02;KEGG=Os06t0490700-02
Chr06	irgsp1_rep	CDS	16913054	16913194	.	+	0	Parent=Os06t0490700-02
Chr06	irgsp1_rep	CDS	16913281	16913390	.	+	0	Parent=Os06t0490700-02
Chr06	irgsp1_rep	CDS	16914739	16914848	.	+	1	Parent=Os06t0490700-02
Chr06	irgsp1_rep	CDS	16915400	16915425	.	+	2	Parent=Os06t0490700-02
Chr06	irgsp1_rep	three_prime_UTR	16915426	16915448	.	+	.	Parent=Os06t0490700-02
Chr06	irgsp1_rep	three_prime_UTR	16916316	16916624	.	+	.	Parent=Os06t0490700-02
Chr06	irgsp1_rep	mRNA	16963479	16966760	.	-	.	ID=Os06t0491300-01;Name=Os06t0491300-01;Locus_id=Os06g0491300;Note=Hypothetical conserved gene.;Transcript_evidence=AK241588 (DDBJ%2C Best hit);ORF_evidence=B8B2S4 (UniProt);NIAS_FLcDNA=J065182I06;TENOR=Os06t0491300-01;KEGG=Os06t0491300-01
Chr06	irgsp1_rep	five_prime_UTR	16966599	16966760	.	-	.	Parent=Os06t0491300-01
Chr06	irgsp1_rep	CDS	16966317	16966598	.	-	0	Parent=Os06t0491300-01
Chr06	irgsp1_rep	three_prime_UTR	16966271	16966316	.	-	.	Parent=Os06t0491300-01
Chr06	irgsp1_rep	three_prime_UTR	16966043	16966188	.	-	.	Parent=Os06t0491300-01
Chr06	irgsp1_rep	three_prime_UTR	16965019	16965314	.	-	.	Parent=Os06t0491300-01
Chr06	irgsp1_rep	three_prime_UTR	16964282	16964485	.	-	.	Parent=Os06t0491300-01
Chr06	irgsp1_rep	three_prime_UTR	16963980	16964091	.	-	.	Parent=Os06t0491300-01
Chr06	irgsp1_rep	three_prime_UTR	16963479	16963753	.	-	.	Parent=Os06t0491300-01
Chr06	irgsp1_rep	mRNA	16968153	16970345	.	-	.	ID=Os06t0491566-01;Name=Os06t0491566-01;Locus_id=Os06g0491566;Note=Conserved hypothetical protein.;Transcript_evidence=AK241353 (DDBJ%2C Best hit);ORF_evidence=Q53MA0 (UniProt);NIAS_FLcDNA=J065149L03;TENOR=Os06t0491566-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	16969910	16970345	.	-	.	Parent=Os06t0491566-01
Chr06	irgsp1_rep	five_prime_UTR	16968904	16969435	.	-	.	Parent=Os06t0491566-01
Chr06	irgsp1_rep	CDS	16968610	16968903	.	-	0	Parent=Os06t0491566-01
Chr06	irgsp1_rep	three_prime_UTR	16968153	16968609	.	-	.	Parent=Os06t0491566-01
Chr06	irgsp1_rep	mRNA	16991828	16994085	.	-	.	ID=Os06t0491800-01;Name=Os06t0491800-01;Locus_id=Os06g0491800;Note=HAT dimerisation domain containing protein.;Transcript_evidence=AK064475 (DDBJ%2C Best hit);ORF_evidence=Q8S6T7 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein dimerization activity (GO:0046983);InterPro=HAT dimerisation (IPR008906),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=002-110-H12;TENOR=Os06t0491800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	16993098	16994085	.	-	.	Parent=Os06t0491800-01
Chr06	irgsp1_rep	CDS	16992468	16993097	.	-	0	Parent=Os06t0491800-01
Chr06	irgsp1_rep	three_prime_UTR	16992348	16992467	.	-	.	Parent=Os06t0491800-01
Chr06	irgsp1_rep	three_prime_UTR	16992180	16992258	.	-	.	Parent=Os06t0491800-01
Chr06	irgsp1_rep	three_prime_UTR	16991828	16992100	.	-	.	Parent=Os06t0491800-01
Chr06	irgsp1_rep	mRNA	16998507	17002390	.	-	.	ID=Os06t0491901-01;Name=Os06t0491901-01;Locus_id=Os06g0491901;Note=Non-protein coding transcript.;Transcript_evidence=AK318567 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080056I15;TENOR=Os06t0491901-01
Chr06	irgsp1_rep	exon	17001810	17002390	.	-	.	Parent=Os06t0491901-01
Chr06	irgsp1_rep	exon	16998507	16999002	.	-	.	Parent=Os06t0491901-01
Chr06	irgsp1_rep	mRNA	17003636	17010230	.	-	.	ID=Os06t0492000-01;Name=Os06t0492000-01;Locus_id=Os06g0492000;Note=Similar to Phosphatidylinositol synthase.;Transcript_evidence=AK071004 (DDBJ%2C Best hit);ORF_evidence=Q9AR90 (UniProt);GO=Biological Process: phospholipid biosynthetic process (GO:0008654),Cellular Component: membrane (GO:0016020),Molecular Function: phosphotransferase activity%2C for other substituted phosphate groups (GO:0016780);InterPro=CDP-alcohol phosphatidyltransferase (IPR000462);NIAS_FLcDNA=J023076M04;TENOR=Os06t0492000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	17010212	17010230	.	-	.	Parent=Os06t0492000-01
Chr06	irgsp1_rep	CDS	17010094	17010211	.	-	0	Parent=Os06t0492000-01
Chr06	irgsp1_rep	CDS	17006011	17006095	.	-	2	Parent=Os06t0492000-01
Chr06	irgsp1_rep	CDS	17005891	17005927	.	-	1	Parent=Os06t0492000-01
Chr06	irgsp1_rep	three_prime_UTR	17005878	17005890	.	-	.	Parent=Os06t0492000-01
Chr06	irgsp1_rep	three_prime_UTR	17005614	17005653	.	-	.	Parent=Os06t0492000-01
Chr06	irgsp1_rep	three_prime_UTR	17005475	17005519	.	-	.	Parent=Os06t0492000-01
Chr06	irgsp1_rep	three_prime_UTR	17005323	17005388	.	-	.	Parent=Os06t0492000-01
Chr06	irgsp1_rep	three_prime_UTR	17004939	17005053	.	-	.	Parent=Os06t0492000-01
Chr06	irgsp1_rep	three_prime_UTR	17004557	17004613	.	-	.	Parent=Os06t0492000-01
Chr06	irgsp1_rep	three_prime_UTR	17003636	17004471	.	-	.	Parent=Os06t0492000-01
Chr06	irgsp1_rep	mRNA	17006585	17008463	.	+	.	ID=Os06t0492101-00;Name=Os06t0492101-00;Locus_id=Os06g0492101;Note=Hypothetical conserved gene.;Transcript_evidence=CU405993 (DDBJ%2C Best hit);ORF_evidence=B9FTE0 (UniProt);TENOR=Os06t0492101-00;KEGG=Os06t0492101-00
Chr06	irgsp1_rep	five_prime_UTR	17006585	17006638	.	+	.	Parent=Os06t0492101-00
Chr06	irgsp1_rep	five_prime_UTR	17006685	17006916	.	+	.	Parent=Os06t0492101-00
Chr06	irgsp1_rep	five_prime_UTR	17007162	17007320	.	+	.	Parent=Os06t0492101-00
Chr06	irgsp1_rep	CDS	17007321	17007336	.	+	0	Parent=Os06t0492101-00
Chr06	irgsp1_rep	CDS	17007649	17007803	.	+	2	Parent=Os06t0492101-00
Chr06	irgsp1_rep	CDS	17008228	17008266	.	+	0	Parent=Os06t0492101-00
Chr06	irgsp1_rep	three_prime_UTR	17008267	17008463	.	+	.	Parent=Os06t0492101-00
Chr06	irgsp1_rep	mRNA	17029405	17030321	.	+	.	ID=Os06t0492300-01;Name=Os06t0492300-01;Locus_id=Os06g0492300;Note=Conserved hypothetical protein.;Transcript_evidence=AK241713 (DDBJ%2C Best hit);ORF_evidence=NP_001174800.1 (RefSeq);NIAS_FLcDNA=J065197J12;TENOR=Os06t0492300-01;KEGG=Os06t0492300-01
Chr06	irgsp1_rep	five_prime_UTR	17029405	17029732	.	+	.	Parent=Os06t0492300-01
Chr06	irgsp1_rep	five_prime_UTR	17029810	17029817	.	+	.	Parent=Os06t0492300-01
Chr06	irgsp1_rep	CDS	17029818	17029922	.	+	0	Parent=Os06t0492300-01
Chr06	irgsp1_rep	CDS	17030005	17030175	.	+	0	Parent=Os06t0492300-01
Chr06	irgsp1_rep	three_prime_UTR	17030176	17030321	.	+	.	Parent=Os06t0492300-01
Chr06	irgsp1_rep	mRNA	17035099	17036590	.	+	.	ID=Os06t0492700-00;Name=Os06t0492700-00;Locus_id=Os06g0492700;Note=Similar to Dynein light chain LC6%2C flagellar outer arm.;Transcript_evidence=ab initio prediction;ORF_evidence=B4FI70 (UniProt);GO=Biological Process: microtubule-based process (GO:0007017),Cellular Component: microtubule associated complex (GO:0005875);InterPro=Dynein light chain%2C type 1/2 (IPR001372);TENOR=Os06t0492700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	17035099	17035353	.	+	0	Parent=Os06t0492700-00
Chr06	irgsp1_rep	CDS	17035472	17035574	.	+	0	Parent=Os06t0492700-00
Chr06	irgsp1_rep	CDS	17036532	17036590	.	+	2	Parent=Os06t0492700-00
Chr06	irgsp1_rep	mRNA	17044190	17045874	.	-	.	ID=Os06t0492750-00;Name=Os06t0492750-00;Locus_id=Os06g0492750;Note=Hypothetical protein.;Transcript_evidence=tplb0059j12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0492750-00
Chr06	irgsp1_rep	five_prime_UTR	17045810	17045874	.	-	.	Parent=Os06t0492750-00
Chr06	irgsp1_rep	CDS	17045698	17045809	.	-	0	Parent=Os06t0492750-00
Chr06	irgsp1_rep	CDS	17045481	17045605	.	-	2	Parent=Os06t0492750-00
Chr06	irgsp1_rep	CDS	17044907	17045368	.	-	0	Parent=Os06t0492750-00
Chr06	irgsp1_rep	three_prime_UTR	17044190	17044906	.	-	.	Parent=Os06t0492750-00
Chr06	irgsp1_rep	mRNA	17044755	17046103	.	+	.	ID=Os06t0492800-00;Name=Os06t0492800-00;Locus_id=Os06g0492800;Oryzabase Gene Symbol Synonym(s)=OsFbox309%2C Os_F0312;Oryzabase Gene Name Synonym(s)=F-box protein 309;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A3BBY7 (UniProt);InterPro=FBD (IPR013596);Oryzabase=17088;TENOR=Os06t0492800-00;KEGG=Os06t0492800-00
Chr06	irgsp1_rep	CDS	17044755	17045345	.	+	0	Parent=Os06t0492800-00
Chr06	irgsp1_rep	CDS	17045454	17045597	.	+	0	Parent=Os06t0492800-00
Chr06	irgsp1_rep	CDS	17045687	17046103	.	+	0	Parent=Os06t0492800-00
Chr06	irgsp1_rep	mRNA	17054415	17056375	.	+	.	ID=Os06t0492900-00;Name=Os06t0492900-00;Locus_id=Os06g0492900;Oryzabase Gene Symbol Synonym(s)=OsFbox310%2C Os_F0057;Oryzabase Gene Name Synonym(s)=F-box protein 310;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=tplb0034e19 (Wheat FLcDNA);ORF_evidence=NP_001057679.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),FBD-like (IPR006566),FBD (IPR013596),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17089;TENOR=Os06t0492900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	17054415	17054544	.	+	.	Parent=Os06t0492900-00
Chr06	irgsp1_rep	CDS	17054545	17055600	.	+	0	Parent=Os06t0492900-00
Chr06	irgsp1_rep	CDS	17055702	17055845	.	+	0	Parent=Os06t0492900-00
Chr06	irgsp1_rep	CDS	17055956	17056375	.	+	0	Parent=Os06t0492900-00
Chr06	irgsp1_rep	mRNA	17054447	17056303	.	-	.	ID=Os06t0493001-00;Name=Os06t0493001-00;Locus_id=Os06g0493001;Note=Hypothetical protein.;Transcript_evidence=tplb0028o22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0493001-00
Chr06	irgsp1_rep	five_prime_UTR	17056160	17056303	.	-	.	Parent=Os06t0493001-00
Chr06	irgsp1_rep	CDS	17055964	17056159	.	-	0	Parent=Os06t0493001-00
Chr06	irgsp1_rep	CDS	17055719	17055835	.	-	2	Parent=Os06t0493001-00
Chr06	irgsp1_rep	CDS	17054447	17055614	.	-	2	Parent=Os06t0493001-00
Chr06	irgsp1_rep	mRNA	17066928	17068612	.	-	.	ID=Os06t0493100-01;Name=Os06t0493100-01;Locus_id=Os06g0493100;Oryzabase Gene Symbol Synonym(s)=bphi008a%2C BpHi008A%2C OsRALF-22%2C OsRALF22%2C RALF-22%2C RALF22;Oryzabase Gene Name Synonym(s)=brown planthopper induced008a%2C Brown planthopper induced 008a%2C Rapid alkalization factor 22;Note=Conserved hypothetical protein.;Transcript_evidence=AK063797 (DDBJ%2C Best hit);ORF_evidence=Q84QS8 (UniProt);NIAS_FLcDNA=001-121-F04;Oryzabase=9260;Expression=AK063797;TENOR=Os06t0493100-01;KEGG=Os06t0493100-01
Chr06	irgsp1_rep	five_prime_UTR	17068571	17068612	.	-	.	Parent=Os06t0493100-01
Chr06	irgsp1_rep	CDS	17068465	17068570	.	-	0	Parent=Os06t0493100-01
Chr06	irgsp1_rep	CDS	17067166	17067308	.	-	2	Parent=Os06t0493100-01
Chr06	irgsp1_rep	three_prime_UTR	17066928	17067165	.	-	.	Parent=Os06t0493100-01
Chr06	irgsp1_rep	mRNA	17130109	17134973	.	+	.	ID=Os06t0493600-01;Name=Os06t0493600-01;Locus_id=Os06g0493600;RAP-DB Gene Symbol Synonym(s)=PHO1%3B3%2C OsPHO1%3B3%2C OsPHT1;RAP-DB Gene Name Synonym(s)=PHOSPHATE TRANSPORTER 1%3B3%2C Phosphate transporter 1;CGSNL Gene Symbol=PHO1%3B3;CGSNL Gene Name=PHOSPHATE TRANSPORTER 1%3B3;Oryzabase Gene Symbol Synonym(s)=OsPHO1%3B3%2C OsPHT1;Oryzabase Gene Name Synonym(s)=Phosphate transporter 1;Note=Phosphate (Pi) transporter%2C Pi homeostasis;Transcript_evidence=AK067110 (Genbank);ORF_evidence=Q651J5 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=SPX%2C N-terminal (IPR004331),EXS%2C C-terminal (IPR004342);NIAS_FLcDNA=J013095I12;Manual Curation=April 16%2C 2010;Literature_PMID=20081045;Oryzabase=10426;Expression=AK067110;TENOR=Os06t0493600-01;KEGG=Os06t0493600-01
Chr06	irgsp1_rep	five_prime_UTR	17130109	17130187	.	+	.	Parent=Os06t0493600-01
Chr06	irgsp1_rep	CDS	17130188	17130430	.	+	0	Parent=Os06t0493600-01
Chr06	irgsp1_rep	CDS	17130808	17131168	.	+	0	Parent=Os06t0493600-01
Chr06	irgsp1_rep	CDS	17131755	17132208	.	+	2	Parent=Os06t0493600-01
Chr06	irgsp1_rep	CDS	17132278	17132326	.	+	1	Parent=Os06t0493600-01
Chr06	irgsp1_rep	CDS	17132420	17132491	.	+	0	Parent=Os06t0493600-01
Chr06	irgsp1_rep	CDS	17132587	17132716	.	+	0	Parent=Os06t0493600-01
Chr06	irgsp1_rep	CDS	17132797	17132917	.	+	2	Parent=Os06t0493600-01
Chr06	irgsp1_rep	CDS	17133009	17133258	.	+	1	Parent=Os06t0493600-01
Chr06	irgsp1_rep	CDS	17133349	17133453	.	+	0	Parent=Os06t0493600-01
Chr06	irgsp1_rep	CDS	17133549	17133593	.	+	0	Parent=Os06t0493600-01
Chr06	irgsp1_rep	CDS	17133748	17133900	.	+	0	Parent=Os06t0493600-01
Chr06	irgsp1_rep	CDS	17133987	17134265	.	+	0	Parent=Os06t0493600-01
Chr06	irgsp1_rep	CDS	17134360	17134496	.	+	0	Parent=Os06t0493600-01
Chr06	irgsp1_rep	CDS	17134572	17134659	.	+	1	Parent=Os06t0493600-01
Chr06	irgsp1_rep	three_prime_UTR	17134660	17134973	.	+	.	Parent=Os06t0493600-01
Chr06	irgsp1_rep	mRNA	17130705	17132239	.	-	.	ID=Os06t0493700-01;Name=Os06t0493700-01;Locus_id=Os06g0493700;RAP-DB Gene Symbol Synonym(s)=PHO1%3B3 CIS-NAT%2C OsPHO1%3B3 cis-NAT;RAP-DB Gene Name Synonym(s)=PHOSPHATE TRANSPORTER 1%3B3 CIS-NATURAL ANTISENSE TRANSCRIPT;CGSNL Gene Symbol=PHO1%3B3 CIS-NAT;CGSNL Gene Name=PHOSPHATE TRANSPORTER 1%3B3 CIS-NATURAL ANTISENSE TRANSCRIPT;Oryzabase Gene Symbol Synonym(s)=OsPHO1%3B3 cis-NAT;Note=Pi homeostasis;Transcript_evidence=AK109204 (Genbank);ORF_evidence=Q651J4 (UniProt);NIAS_FLcDNA=002-156-C06;Manual Curation=April 16%2C 2010;Literature_PMID=20081045;Oryzabase=10427;Expression=AK109204;TENOR=Os06t0493700-01;KEGG=Os06t0493700-01
Chr06	irgsp1_rep	five_prime_UTR	17132207	17132239	.	-	.	Parent=Os06t0493700-01
Chr06	irgsp1_rep	five_prime_UTR	17131822	17132110	.	-	.	Parent=Os06t0493700-01
Chr06	irgsp1_rep	CDS	17131813	17131821	.	-	0	Parent=Os06t0493700-01
Chr06	irgsp1_rep	CDS	17130715	17131224	.	-	0	Parent=Os06t0493700-01
Chr06	irgsp1_rep	three_prime_UTR	17130705	17130714	.	-	.	Parent=Os06t0493700-01
Chr06	irgsp1_rep	mRNA	17139742	17141030	.	-	.	ID=Os06t0493800-00;Name=Os06t0493800-00;Locus_id=Os06g0493800;Note=Conserved hypothetical protein.;Transcript_evidence=CT837792 (DDBJ%2C Best hit);ORF_evidence=B9G2N4 (UniProt);TENOR=Os06t0493800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	17140911	17141030	.	-	.	Parent=Os06t0493800-00
Chr06	irgsp1_rep	five_prime_UTR	17139955	17140508	.	-	.	Parent=Os06t0493800-00
Chr06	irgsp1_rep	CDS	17139742	17139954	.	-	0	Parent=Os06t0493800-00
Chr06	irgsp1_rep	mRNA	17142218	17144233	.	-	.	ID=Os06t0493801-00;Name=Os06t0493801-00;Locus_id=Os06g0493801;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A3BBZ3 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os06t0493801-00;KEGG=Os06t0493801-00
Chr06	irgsp1_rep	CDS	17142218	17144233	.	-	0	Parent=Os06t0493801-00
Chr06	irgsp1_rep	mRNA	17144902	17145456	.	+	.	ID=Os06t0493900-00;Name=Os06t0493900-00;Locus_id=Os06g0493900;Note=Conserved hypothetical protein.;Transcript_evidence=BT038675 (DDBJ);ORF_evidence=B8B9C3 (UniProt);TENOR=Os06t0493900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	17144902	17145216	.	+	.	Parent=Os06t0493900-00
Chr06	irgsp1_rep	CDS	17145217	17145399	.	+	0	Parent=Os06t0493900-00
Chr06	irgsp1_rep	three_prime_UTR	17145400	17145456	.	+	.	Parent=Os06t0493900-00
Chr06	irgsp1_rep	mRNA	17156157	17159843	.	+	.	ID=Os06t0494000-01;Name=Os06t0494000-01;Locus_id=Os06g0494000;Note=Paired amphipathic helix domain containing protein.;Transcript_evidence=AK105390 (DDBJ%2C Best hit);ORF_evidence=B9FTE5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634);InterPro=Paired amphipathic helix (IPR003822);NIAS_FLcDNA=001-122-C10;Expression=AK105390;TENOR=Os06t0494000-01;KEGG=Os06t0494000-01
Chr06	irgsp1_rep	five_prime_UTR	17156157	17156239	.	+	.	Parent=Os06t0494000-01
Chr06	irgsp1_rep	five_prime_UTR	17157401	17157440	.	+	.	Parent=Os06t0494000-01
Chr06	irgsp1_rep	CDS	17157441	17157524	.	+	0	Parent=Os06t0494000-01
Chr06	irgsp1_rep	CDS	17159250	17159330	.	+	0	Parent=Os06t0494000-01
Chr06	irgsp1_rep	CDS	17159444	17159626	.	+	0	Parent=Os06t0494000-01
Chr06	irgsp1_rep	three_prime_UTR	17159627	17159843	.	+	.	Parent=Os06t0494000-01
Chr06	irgsp1_rep	mRNA	17158858	17159819	.	+	.	ID=Os06t0494000-02;Name=Os06t0494000-02;Locus_id=Os06g0494000;Note=Hypothetical conserved gene.;Transcript_evidence=AK102288 (DDBJ%2C Best hit);ORF_evidence=B9FTE5 (UniProt);NIAS_FLcDNA=J033089K03;Expression=AK102288;TENOR=Os06t0494000-02;KEGG=Os06t0494000-02
Chr06	irgsp1_rep	five_prime_UTR	17158858	17159422	.	+	.	Parent=Os06t0494000-02
Chr06	irgsp1_rep	CDS	17159423	17159626	.	+	0	Parent=Os06t0494000-02
Chr06	irgsp1_rep	three_prime_UTR	17159627	17159819	.	+	.	Parent=Os06t0494000-02
Chr06	irgsp1_rep	mRNA	17160333	17164820	.	-	.	ID=Os06t0494100-01;Name=Os06t0494100-01;Locus_id=Os06g0494100;CGSNL Gene Symbol=PID2;CGSNL Gene Name=PYRICULARIA ORYZAE RESISTANCE D2;Oryzabase Gene Symbol Synonym(s)=Pi-d2%2C Pi-d(t)2%2C PiD2(t)%2C Pid2%2C PI-D2%2C Pi-d2(t);Oryzabase Gene Name Synonym(s)=Pyricularia oryzae resistance d2%2C Magnaporthe grisea resistance d2%2C Blast resistance d2%2C PI-D2 protein kinase;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK069883 (DDBJ%2C Best hit);ORF_evidence=D7F606 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),S-receptor-like serine/threonine-protein kinase (IPR024171);NIAS_FLcDNA=J023036O17;Oryzabase=6332;Expression=AK069883;TENOR=Os06t0494100-01;KEGG=Os06t0494100-01
Chr06	irgsp1_rep	five_prime_UTR	17164661	17164820	.	-	.	Parent=Os06t0494100-01
Chr06	irgsp1_rep	five_prime_UTR	17163622	17163716	.	-	.	Parent=Os06t0494100-01
Chr06	irgsp1_rep	five_prime_UTR	17163174	17163176	.	-	.	Parent=Os06t0494100-01
Chr06	irgsp1_rep	CDS	17160636	17163173	.	-	0	Parent=Os06t0494100-01
Chr06	irgsp1_rep	three_prime_UTR	17160333	17160635	.	-	.	Parent=Os06t0494100-01
Chr06	irgsp1_rep	mRNA	17160455	17164662	.	-	.	ID=Os06t0494100-02;Name=Os06t0494100-02;Locus_id=Os06g0494100;CGSNL Gene Symbol=PID2;CGSNL Gene Name=PYRICULARIA ORYZAE RESISTANCE D2;Oryzabase Gene Symbol Synonym(s)=Pi-d2%2C Pi-d(t)2%2C PiD2(t)%2C Pid2%2C PI-D2%2C Pi-d2(t);Oryzabase Gene Name Synonym(s)=Pyricularia oryzae resistance d2%2C Magnaporthe grisea resistance d2%2C Blast resistance d2%2C PI-D2 protein kinase;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK121177 (DDBJ%2C Best hit);ORF_evidence=D7F606 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),S-receptor-like serine/threonine-protein kinase (IPR024171);NIAS_FLcDNA=J023083E04;Oryzabase=6332;Expression=AK121177;TENOR=Os06t0494100-02;KEGG=Os06t0494100-02
Chr06	irgsp1_rep	five_prime_UTR	17163622	17164662	.	-	.	Parent=Os06t0494100-02
Chr06	irgsp1_rep	five_prime_UTR	17163174	17163176	.	-	.	Parent=Os06t0494100-02
Chr06	irgsp1_rep	CDS	17160636	17163173	.	-	0	Parent=Os06t0494100-02
Chr06	irgsp1_rep	three_prime_UTR	17160455	17160635	.	-	.	Parent=Os06t0494100-02
Chr06	irgsp1_rep	mRNA	17160470	17163731	.	+	.	ID=Os06t0494250-00;Name=Os06t0494250-00;Locus_id=Os06g0494250;Note=Hypothetical protein.;Transcript_evidence=tplb0029g16 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0494250-00
Chr06	irgsp1_rep	five_prime_UTR	17160470	17161268	.	+	.	Parent=Os06t0494250-00
Chr06	irgsp1_rep	CDS	17161269	17161694	.	+	0	Parent=Os06t0494250-00
Chr06	irgsp1_rep	three_prime_UTR	17161695	17163199	.	+	.	Parent=Os06t0494250-00
Chr06	irgsp1_rep	three_prime_UTR	17163647	17163731	.	+	.	Parent=Os06t0494250-00
Chr06	irgsp1_rep	mRNA	17194074	17200567	.	+	.	ID=Os06t0494400-01;Name=Os06t0494400-01;Locus_id=Os06g0494400;Note=Multi antimicrobial extrusion protein MatE family protein.;Transcript_evidence=AK067594 (DDBJ%2C Best hit);ORF_evidence=B7FAP5 (UniProt);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);NIAS_FLcDNA=J013109D22;Expression=AK067594;TENOR=Os06t0494400-01;KEGG=Os06t0494400-01
Chr06	irgsp1_rep	five_prime_UTR	17194074	17194280	.	+	.	Parent=Os06t0494400-01
Chr06	irgsp1_rep	CDS	17194281	17194559	.	+	0	Parent=Os06t0494400-01
Chr06	irgsp1_rep	CDS	17196704	17197248	.	+	0	Parent=Os06t0494400-01
Chr06	irgsp1_rep	CDS	17197423	17197509	.	+	1	Parent=Os06t0494400-01
Chr06	irgsp1_rep	CDS	17197625	17197681	.	+	1	Parent=Os06t0494400-01
Chr06	irgsp1_rep	CDS	17197792	17198030	.	+	1	Parent=Os06t0494400-01
Chr06	irgsp1_rep	CDS	17199920	17200038	.	+	2	Parent=Os06t0494400-01
Chr06	irgsp1_rep	CDS	17200154	17200240	.	+	0	Parent=Os06t0494400-01
Chr06	irgsp1_rep	CDS	17200336	17200395	.	+	0	Parent=Os06t0494400-01
Chr06	irgsp1_rep	three_prime_UTR	17200396	17200567	.	+	.	Parent=Os06t0494400-01
Chr06	irgsp1_rep	mRNA	17236186	17239130	.	-	.	ID=Os06t0494701-01;Name=Os06t0494701-01;Locus_id=Os06g0494701;Note=Conserved hypothetical protein.;Transcript_evidence=AK289021 (DDBJ%2C Best hit);ORF_evidence=Q8LNR9 (UniProt);NIAS_FLcDNA=J090090G05;TENOR=Os06t0494701-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	17237518	17239130	.	-	.	Parent=Os06t0494701-01
Chr06	irgsp1_rep	CDS	17237290	17237517	.	-	0	Parent=Os06t0494701-01
Chr06	irgsp1_rep	three_prime_UTR	17236186	17237289	.	-	.	Parent=Os06t0494701-01
Chr06	irgsp1_rep	mRNA	17246971	17247773	.	+	.	ID=Os06t0495100-00;Name=Os06t0495100-00;Locus_id=Os06g0495100;Note=Similar to cDNA%2C clone: J100088H20%2C full insert sequence.;Transcript_evidence=ab initio prediction;ORF_evidence=B7FAP5 (UniProt);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);TENOR=Os06t0495100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	17246971	17247136	.	+	0	Parent=Os06t0495100-00
Chr06	irgsp1_rep	CDS	17247305	17247423	.	+	2	Parent=Os06t0495100-00
Chr06	irgsp1_rep	CDS	17247539	17247625	.	+	0	Parent=Os06t0495100-00
Chr06	irgsp1_rep	CDS	17247714	17247773	.	+	0	Parent=Os06t0495100-00
Chr06	irgsp1_rep	mRNA	17257330	17269670	.	+	.	ID=Os06t0495500-01;Name=Os06t0495500-01;Locus_id=Os06g0495500;Note=Multi antimicrobial extrusion protein MatE family protein.;Transcript_evidence=AK109873 (DDBJ%2C Best hit);ORF_evidence=B7FAP5 (UniProt);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);NIAS_FLcDNA=002-149-B05;Expression=AK109873;TENOR=Os06t0495500-01;KEGG=Os06t0495500-01
Chr06	irgsp1_rep	five_prime_UTR	17257330	17257341	.	+	.	Parent=Os06t0495500-01
Chr06	irgsp1_rep	CDS	17257342	17257587	.	+	0	Parent=Os06t0495500-01
Chr06	irgsp1_rep	CDS	17267072	17267616	.	+	0	Parent=Os06t0495500-01
Chr06	irgsp1_rep	CDS	17267735	17267821	.	+	1	Parent=Os06t0495500-01
Chr06	irgsp1_rep	CDS	17267927	17267983	.	+	1	Parent=Os06t0495500-01
Chr06	irgsp1_rep	CDS	17268097	17268335	.	+	1	Parent=Os06t0495500-01
Chr06	irgsp1_rep	CDS	17268897	17269015	.	+	2	Parent=Os06t0495500-01
Chr06	irgsp1_rep	CDS	17269146	17269232	.	+	0	Parent=Os06t0495500-01
Chr06	irgsp1_rep	CDS	17269342	17269401	.	+	0	Parent=Os06t0495500-01
Chr06	irgsp1_rep	three_prime_UTR	17269402	17269670	.	+	.	Parent=Os06t0495500-01
Chr06	irgsp1_rep	mRNA	17261160	17261630	.	-	.	ID=Os06t0495632-00;Name=Os06t0495632-00;Locus_id=Os06g0495632;Note=Similar to F-box domain containing protein.;Transcript_evidence=BT085104 (DDBJ);ORF_evidence=NP_001151246.1 (RefSeq);TENOR=Os06t0495632-00
Chr06	irgsp1_rep	five_prime_UTR	17261479	17261630	.	-	.	Parent=Os06t0495632-00
Chr06	irgsp1_rep	CDS	17261233	17261478	.	-	0	Parent=Os06t0495632-00
Chr06	irgsp1_rep	three_prime_UTR	17261160	17261232	.	-	.	Parent=Os06t0495632-00
Chr06	irgsp1_rep	mRNA	17275641	17279946	.	+	.	ID=Os06t0495700-00;Name=Os06t0495700-00;Locus_id=Os06g0495700;Note=Beta tubulin%2C autoregulation binding site domain containing protein.;Transcript_evidence=EU961972 (DDBJ);ORF_evidence=NP_001149074.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),PSP%2C proline-rich (IPR006568),Zinc finger%2C CCHC retroviral-type (IPR013084);TENOR=Os06t0495700-00;KEGG=Os06t0495700-00
Chr06	irgsp1_rep	five_prime_UTR	17275641	17275769	.	+	.	Parent=Os06t0495700-00
Chr06	irgsp1_rep	CDS	17275770	17275800	.	+	0	Parent=Os06t0495700-00
Chr06	irgsp1_rep	CDS	17275866	17276123	.	+	2	Parent=Os06t0495700-00
Chr06	irgsp1_rep	CDS	17276334	17276409	.	+	2	Parent=Os06t0495700-00
Chr06	irgsp1_rep	CDS	17276576	17276651	.	+	1	Parent=Os06t0495700-00
Chr06	irgsp1_rep	CDS	17277074	17277157	.	+	0	Parent=Os06t0495700-00
Chr06	irgsp1_rep	CDS	17277593	17277714	.	+	0	Parent=Os06t0495700-00
Chr06	irgsp1_rep	CDS	17278293	17278533	.	+	1	Parent=Os06t0495700-00
Chr06	irgsp1_rep	CDS	17279112	17279175	.	+	0	Parent=Os06t0495700-00
Chr06	irgsp1_rep	CDS	17279362	17279870	.	+	2	Parent=Os06t0495700-00
Chr06	irgsp1_rep	three_prime_UTR	17279871	17279946	.	+	.	Parent=Os06t0495700-00
Chr06	irgsp1_rep	mRNA	17284744	17286325	.	+	.	ID=Os06t0495800-01;Name=Os06t0495800-01;Locus_id=Os06g0495800;Note=Protein of unknown function DUF617%2C plant family protein.;Transcript_evidence=AK243449 (DDBJ%2C Best hit);ORF_evidence=B6TX93 (UniProt);InterPro=Protein of unknown function DUF617%2C plant (IPR006460);NIAS_FLcDNA=J100069N08;TENOR=Os06t0495800-01;KEGG=Os06t0495800-01
Chr06	irgsp1_rep	five_prime_UTR	17284744	17285048	.	+	.	Parent=Os06t0495800-01
Chr06	irgsp1_rep	CDS	17285049	17286131	.	+	0	Parent=Os06t0495800-01
Chr06	irgsp1_rep	three_prime_UTR	17286132	17286325	.	+	.	Parent=Os06t0495800-01
Chr06	irgsp1_rep	mRNA	17311252	17318590	.	+	.	ID=Os06t0496000-01;Name=Os06t0496000-01;Locus_id=Os06g0496000;Oryzabase Gene Name Synonym(s)=Sm gene%2C Sm family protein;Note=Like-Sm ribonucleoprotein (LSM)-related domain domain containing protein.;Transcript_evidence=AK101102 (DDBJ%2C Best hit);ORF_evidence=B8B2T9 (UniProt);InterPro=Like-Sm ribonucleoprotein (LSM)-related domain (IPR010920),DFDF motif (IPR019050),FFD/TFG box motif (IPR019053);NIAS_FLcDNA=J033025B03;Oryzabase=15650;Expression=AK101102;TENOR=Os06t0496000-01;KEGG=Os06t0496000-01
Chr06	irgsp1_rep	five_prime_UTR	17311252	17311339	.	+	.	Parent=Os06t0496000-01
Chr06	irgsp1_rep	CDS	17311340	17311469	.	+	0	Parent=Os06t0496000-01
Chr06	irgsp1_rep	CDS	17313848	17313948	.	+	2	Parent=Os06t0496000-01
Chr06	irgsp1_rep	CDS	17314368	17314436	.	+	0	Parent=Os06t0496000-01
Chr06	irgsp1_rep	CDS	17314547	17315794	.	+	0	Parent=Os06t0496000-01
Chr06	irgsp1_rep	CDS	17315933	17316010	.	+	0	Parent=Os06t0496000-01
Chr06	irgsp1_rep	CDS	17317617	17317799	.	+	0	Parent=Os06t0496000-01
Chr06	irgsp1_rep	CDS	17317876	17317986	.	+	0	Parent=Os06t0496000-01
Chr06	irgsp1_rep	CDS	17318071	17318223	.	+	0	Parent=Os06t0496000-01
Chr06	irgsp1_rep	three_prime_UTR	17318224	17318590	.	+	.	Parent=Os06t0496000-01
Chr06	irgsp1_rep	mRNA	17348908	17350328	.	+	.	ID=Os06t0496400-01;Name=Os06t0496400-01;Locus_id=Os06g0496400;RAP-DB Gene Symbol Synonym(s)=OsbHLH127%2C OsRSL3;RAP-DB Gene Name Synonym(s)=basic helix-loop-helix protein 127;Oryzabase Gene Symbol Synonym(s)=OsbHLH127%2C bHLH127%2C OsRSL3%2C RSL3;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 127%2C ROOT HAIR DEFECTIVE-SIX LIKE 3;Note=ROOT HAIR DEFECTIVE-SIX LIKE (RSL) class I basic helix-loop-helix protein%2C bHLH transcription factor%2C Regulation of root hair development;Transcript_evidence=XM_015787181.1.;ORF_evidence=Q651K2;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);Manual Curation=October 4%2C 2016;Literature_PMID=27494519,27716929;Oryzabase=15405;TENOR=Os06t0496400-00
Chr06	irgsp1_rep	five_prime_UTR	17348908	17349123	.	+	.	Parent=Os06t0496400-01
Chr06	irgsp1_rep	CDS	17349124	17349738	.	+	0	Parent=Os06t0496400-01
Chr06	irgsp1_rep	CDS	17349884	17350153	.	+	0	Parent=Os06t0496400-01
Chr06	irgsp1_rep	three_prime_UTR	17350154	17350328	.	+	.	Parent=Os06t0496400-01
Chr06	irgsp1_rep	mRNA	17361967	17362986	.	+	.	ID=Os06t0496601-00;Name=Os06t0496601-00;Locus_id=Os06g0496601;Note=Hypothetical gene.;Transcript_evidence=AK107975 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;Expression=AK107975;TENOR=Os06t0496601-00;KEGG=Os06t0496601-00
Chr06	irgsp1_rep	five_prime_UTR	17361967	17362457	.	+	.	Parent=Os06t0496601-00
Chr06	irgsp1_rep	CDS	17362458	17362796	.	+	0	Parent=Os06t0496601-00
Chr06	irgsp1_rep	three_prime_UTR	17362797	17362986	.	+	.	Parent=Os06t0496601-00
Chr06	irgsp1_rep	mRNA	17378401	17381296	.	+	.	ID=Os06t0496800-01;Name=Os06t0496800-01;Locus_id=Os06g0496800;Note=Similar to S-locus receptor kinase precursor.;Transcript_evidence=AK105608 (DDBJ%2C Best hit);ORF_evidence=B6T9K5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-200-B02;Expression=AK105608;TENOR=Os06t0496800-01;KEGG=Os06t0496800-01
Chr06	irgsp1_rep	five_prime_UTR	17378401	17378549	.	+	.	Parent=Os06t0496800-01
Chr06	irgsp1_rep	CDS	17378550	17378661	.	+	0	Parent=Os06t0496800-01
Chr06	irgsp1_rep	CDS	17378749	17378862	.	+	2	Parent=Os06t0496800-01
Chr06	irgsp1_rep	CDS	17378944	17379089	.	+	2	Parent=Os06t0496800-01
Chr06	irgsp1_rep	CDS	17379153	17379366	.	+	0	Parent=Os06t0496800-01
Chr06	irgsp1_rep	CDS	17379869	17380106	.	+	2	Parent=Os06t0496800-01
Chr06	irgsp1_rep	CDS	17380233	17380383	.	+	1	Parent=Os06t0496800-01
Chr06	irgsp1_rep	CDS	17380678	17381007	.	+	0	Parent=Os06t0496800-01
Chr06	irgsp1_rep	three_prime_UTR	17381008	17381296	.	+	.	Parent=Os06t0496800-01
Chr06	irgsp1_rep	mRNA	17378461	17381302	.	+	.	ID=Os06t0496800-02;Name=Os06t0496800-02;Locus_id=Os06g0496800;Note=Similar to S-locus receptor kinase precursor.;Transcript_evidence=AK069969 (DDBJ%2C Best hit);ORF_evidence=B6T9K5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023038O14;Expression=AK069969;TENOR=Os06t0496800-02;KEGG=Os06t0496800-02
Chr06	irgsp1_rep	five_prime_UTR	17378461	17378549	.	+	.	Parent=Os06t0496800-02
Chr06	irgsp1_rep	CDS	17378550	17378661	.	+	0	Parent=Os06t0496800-02
Chr06	irgsp1_rep	CDS	17378749	17378862	.	+	2	Parent=Os06t0496800-02
Chr06	irgsp1_rep	CDS	17378944	17379089	.	+	2	Parent=Os06t0496800-02
Chr06	irgsp1_rep	CDS	17379153	17379366	.	+	0	Parent=Os06t0496800-02
Chr06	irgsp1_rep	CDS	17379869	17380106	.	+	2	Parent=Os06t0496800-02
Chr06	irgsp1_rep	CDS	17380233	17380383	.	+	1	Parent=Os06t0496800-02
Chr06	irgsp1_rep	CDS	17380678	17381007	.	+	0	Parent=Os06t0496800-02
Chr06	irgsp1_rep	three_prime_UTR	17381008	17381302	.	+	.	Parent=Os06t0496800-02
Chr06	irgsp1_rep	mRNA	17387571	17389497	.	-	.	ID=Os06t0496875-01;Name=Os06t0496875-01;Locus_id=Os06g0496875;Note=Non-protein coding transcript.;Transcript_evidence=AK242952 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090088O17;TENOR=Os06t0496875-01
Chr06	irgsp1_rep	exon	17389232	17389497	.	-	.	Parent=Os06t0496875-01
Chr06	irgsp1_rep	exon	17389071	17389136	.	-	.	Parent=Os06t0496875-01
Chr06	irgsp1_rep	exon	17388463	17388973	.	-	.	Parent=Os06t0496875-01
Chr06	irgsp1_rep	exon	17388281	17388338	.	-	.	Parent=Os06t0496875-01
Chr06	irgsp1_rep	exon	17387571	17387828	.	-	.	Parent=Os06t0496875-01
Chr06	irgsp1_rep	mRNA	17426721	17427653	.	+	.	ID=Os06t0497200-00;Name=Os06t0497200-00;Locus_id=Os06g0497200;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B7F8Q5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);TENOR=Os06t0497200-00;KEGG=Os06t0497200-00
Chr06	irgsp1_rep	CDS	17426721	17427653	.	+	0	Parent=Os06t0497200-00
Chr06	irgsp1_rep	mRNA	17426791	17428342	.	-	.	ID=Os06t0497275-00;Name=Os06t0497275-00;Locus_id=Os06g0497275;Note=Hypothetical protein.;Transcript_evidence=tplb0041k22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0497275-00
Chr06	irgsp1_rep	CDS	17427941	17428342	.	-	0	Parent=Os06t0497275-00
Chr06	irgsp1_rep	three_prime_UTR	17427726	17427940	.	-	.	Parent=Os06t0497275-00
Chr06	irgsp1_rep	three_prime_UTR	17426791	17427640	.	-	.	Parent=Os06t0497275-00
Chr06	irgsp1_rep	mRNA	17427773	17428339	.	+	.	ID=Os06t0497350-00;Name=Os06t0497350-00;Locus_id=Os06g0497350;Note=Similar to CytoChrome P450 CYP71K14.;Transcript_evidence=ab initio prediction;ORF_evidence=B7F8Q5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: monooxygenase activity (GO:0004497),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group IV (IPR002403),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os06t0497350-00;KEGG=Os06t0497350-00
Chr06	irgsp1_rep	CDS	17427773	17428339	.	+	0	Parent=Os06t0497350-00
Chr06	irgsp1_rep	mRNA	17433902	17438253	.	+	.	ID=Os06t0497500-00;Name=Os06t0497500-00;Locus_id=Os06g0497500;Note=Conserved hypothetical protein.;Transcript_evidence=AK374682 (DDBJ);ORF_evidence=Q654I8 (UniProt);TENOR=Os06t0497500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	17433902	17434868	.	+	0	Parent=Os06t0497500-00
Chr06	irgsp1_rep	CDS	17437848	17438212	.	+	2	Parent=Os06t0497500-00
Chr06	irgsp1_rep	three_prime_UTR	17438213	17438253	.	+	.	Parent=Os06t0497500-00
Chr06	irgsp1_rep	mRNA	17444163	17446476	.	-	.	ID=Os06t0497600-01;Name=Os06t0497600-01;Locus_id=Os06g0497600;Note=Similar to H0321H01.8 protein.;Transcript_evidence=AK289160 (DDBJ%2C Best hit);ORF_evidence=Q01L72 (UniProt);NIAS_FLcDNA=J100002J11;TENOR=Os06t0497600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	17445520	17446476	.	-	.	Parent=Os06t0497600-01
Chr06	irgsp1_rep	five_prime_UTR	17444301	17444988	.	-	.	Parent=Os06t0497600-01
Chr06	irgsp1_rep	CDS	17444163	17444300	.	-	0	Parent=Os06t0497600-01
Chr06	irgsp1_rep	mRNA	17454302	17454986	.	+	.	ID=Os06t0498000-00;Name=Os06t0498000-00;Locus_id=Os06g0498000;Note=Conserved hypothetical protein.;Transcript_evidence=BT069567 (DDBJ);ORF_evidence=NP_001057697.1 (RefSeq);TENOR=Os06t0498000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	17454302	17454952	.	+	0	Parent=Os06t0498000-00
Chr06	irgsp1_rep	three_prime_UTR	17454953	17454986	.	+	.	Parent=Os06t0498000-00
Chr06	irgsp1_rep	mRNA	17470732	17471497	.	-	.	ID=Os06t0498150-01;Name=Os06t0498150-01;Locus_id=Os06g0498150;RAP-DB Gene Symbol Synonym(s)=MEG3;RAP-DB Gene Name Synonym(s)=Maternally Expressed Gene3;Oryzabase Gene Symbol Synonym(s)=OsEnS-86%2C EnS-86%2C MEG3;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 86%2C Maternally Expressed Gene 3;Note=Regulation of seed development;Transcript_evidence=Inferred from literature;ORF_evidence=C7J3H9;Manual Curation=April 3%2C 2017;Literature_PMID=28295376;Oryzabase=18399;TENOR=Os06t0498150-00;KEGG=Os06t0498150-00
Chr06	irgsp1_rep	five_prime_UTR	17471441	17471497	.	-	.	Parent=Os06t0498150-01
Chr06	irgsp1_rep	CDS	17471111	17471440	.	-	0	Parent=Os06t0498150-01
Chr06	irgsp1_rep	three_prime_UTR	17470732	17471110	.	-	.	Parent=Os06t0498150-01
Chr06	irgsp1_rep	mRNA	17489516	17500449	.	+	.	ID=Os06t0498400-01;Name=Os06t0498400-01;Locus_id=Os06g0498400;CGSNL Gene Symbol=GWD1;CGSNL Gene Name=ALPHA-GLUCAN%2C WATER DIKINASE 1;Oryzabase Gene Name Synonym(s)="alpha-glucan%2C water dikinase 1";Note=Similar to Alpha-glucan water dikinase%2C chloroplast precursor (EC 2.7.9.4) (Starch-related R1 protein).;Transcript_evidence=AK103463 (DDBJ%2C Best hit);ORF_evidence=B2M0R3 (UniProt);GO=Biological Process: phosphorylation (GO:0016310),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524),Molecular Function: kinase activity (GO:0016301),Molecular Function: ligase activity (GO:0016874);InterPro=Pyruvate phosphate dikinase%2C PEP/pyruvate-binding (IPR002192),ATP-grasp fold%2C subdomain 1 (IPR013815),ATP-grasp fold%2C subdomain 2 (IPR013816);NIAS_FLcDNA=J033129M19;Oryzabase=21772;Expression=AK103463;TENOR=Os06t0498400-01;KEGG=Os06t0498400-01 (EC:2.7.9.4)
Chr06	irgsp1_rep	five_prime_UTR	17489516	17489516	.	+	.	Parent=Os06t0498400-01
Chr06	irgsp1_rep	CDS	17489517	17489606	.	+	0	Parent=Os06t0498400-01
Chr06	irgsp1_rep	CDS	17489692	17489733	.	+	0	Parent=Os06t0498400-01
Chr06	irgsp1_rep	CDS	17489850	17489959	.	+	0	Parent=Os06t0498400-01
Chr06	irgsp1_rep	CDS	17490101	17490179	.	+	1	Parent=Os06t0498400-01
Chr06	irgsp1_rep	CDS	17490258	17490349	.	+	0	Parent=Os06t0498400-01
Chr06	irgsp1_rep	CDS	17490432	17490604	.	+	1	Parent=Os06t0498400-01
Chr06	irgsp1_rep	CDS	17490903	17491132	.	+	2	Parent=Os06t0498400-01
Chr06	irgsp1_rep	CDS	17491211	17491546	.	+	0	Parent=Os06t0498400-01
Chr06	irgsp1_rep	CDS	17491623	17491730	.	+	0	Parent=Os06t0498400-01
Chr06	irgsp1_rep	CDS	17491829	17491927	.	+	0	Parent=Os06t0498400-01
Chr06	irgsp1_rep	CDS	17492006	17492136	.	+	0	Parent=Os06t0498400-01
Chr06	irgsp1_rep	CDS	17492736	17492831	.	+	1	Parent=Os06t0498400-01
Chr06	irgsp1_rep	CDS	17492914	17493048	.	+	1	Parent=Os06t0498400-01
Chr06	irgsp1_rep	CDS	17493286	17493448	.	+	1	Parent=Os06t0498400-01
Chr06	irgsp1_rep	CDS	17493537	17493626	.	+	0	Parent=Os06t0498400-01
Chr06	irgsp1_rep	CDS	17493712	17493897	.	+	0	Parent=Os06t0498400-01
Chr06	irgsp1_rep	CDS	17494844	17494906	.	+	0	Parent=Os06t0498400-01
Chr06	irgsp1_rep	CDS	17494983	17495045	.	+	0	Parent=Os06t0498400-01
Chr06	irgsp1_rep	CDS	17495127	17495186	.	+	0	Parent=Os06t0498400-01
Chr06	irgsp1_rep	CDS	17495402	17495554	.	+	0	Parent=Os06t0498400-01
Chr06	irgsp1_rep	CDS	17495674	17495757	.	+	0	Parent=Os06t0498400-01
Chr06	irgsp1_rep	CDS	17496578	17496754	.	+	0	Parent=Os06t0498400-01
Chr06	irgsp1_rep	CDS	17496829	17496935	.	+	0	Parent=Os06t0498400-01
Chr06	irgsp1_rep	CDS	17497002	17497215	.	+	1	Parent=Os06t0498400-01
Chr06	irgsp1_rep	CDS	17497302	17497405	.	+	0	Parent=Os06t0498400-01
Chr06	irgsp1_rep	CDS	17498070	17498205	.	+	1	Parent=Os06t0498400-01
Chr06	irgsp1_rep	CDS	17498335	17498460	.	+	0	Parent=Os06t0498400-01
Chr06	irgsp1_rep	CDS	17498826	17498936	.	+	0	Parent=Os06t0498400-01
Chr06	irgsp1_rep	CDS	17499112	17499210	.	+	0	Parent=Os06t0498400-01
Chr06	irgsp1_rep	CDS	17499511	17499777	.	+	0	Parent=Os06t0498400-01
Chr06	irgsp1_rep	CDS	17499851	17499966	.	+	0	Parent=Os06t0498400-01
Chr06	irgsp1_rep	CDS	17500048	17500252	.	+	1	Parent=Os06t0498400-01
Chr06	irgsp1_rep	three_prime_UTR	17500253	17500449	.	+	.	Parent=Os06t0498400-01
Chr06	irgsp1_rep	mRNA	17500113	17500476	.	+	.	ID=Os06t0498400-02;Name=Os06t0498400-02;Locus_id=Os06g0498400;CGSNL Gene Symbol=GWD1;CGSNL Gene Name=ALPHA-GLUCAN%2C WATER DIKINASE 1;Oryzabase Gene Name Synonym(s)="alpha-glucan%2C water dikinase 1";Note=Similar to Alpha-glucan water dikinase (Fragment).;Transcript_evidence=AK058235 (DDBJ%2C Best hit);ORF_evidence=C3W8P1 (UniProt);GO=Biological Process: phosphorylation (GO:0016310),Molecular Function: ATP binding (GO:0005524),Molecular Function: kinase activity (GO:0016301),Molecular Function: ligase activity (GO:0016874);InterPro=Pyruvate phosphate dikinase%2C PEP/pyruvate-binding (IPR002192),ATP-grasp fold%2C subdomain 2 (IPR013816);NIAS_FLcDNA=001-011-D09;Oryzabase=21772;Expression=AK058235;TENOR=Os06t0498400-02;KEGG=Os06t0498400-02
Chr06	irgsp1_rep	five_prime_UTR	17500113	17500114	.	+	.	Parent=Os06t0498400-02
Chr06	irgsp1_rep	CDS	17500115	17500252	.	+	0	Parent=Os06t0498400-02
Chr06	irgsp1_rep	three_prime_UTR	17500253	17500476	.	+	.	Parent=Os06t0498400-02
Chr06	irgsp1_rep	mRNA	17500677	17501336	.	+	.	ID=Os06t0498450-00;Name=Os06t0498450-00;Locus_id=Os06g0498450;Note=Hypothetical conserved gene.;Transcript_evidence=tplb0004p17 (Wheat FLcDNA);ORF_evidence=F2CYV0 (UniProt);GO=Molecular Function: heat shock protein binding (GO:0031072);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623);TENOR=Os06t0498450-00;KEGG=Os06t0498450-00
Chr06	irgsp1_rep	five_prime_UTR	17500677	17500823	.	+	.	Parent=Os06t0498450-00
Chr06	irgsp1_rep	CDS	17500824	17500951	.	+	0	Parent=Os06t0498450-00
Chr06	irgsp1_rep	CDS	17501124	17501184	.	+	1	Parent=Os06t0498450-00
Chr06	irgsp1_rep	three_prime_UTR	17501185	17501336	.	+	.	Parent=Os06t0498450-00
Chr06	irgsp1_rep	mRNA	17505127	17511672	.	+	.	ID=Os06t0498500-01;Name=Os06t0498500-01;Locus_id=Os06g0498500;CGSNL Gene Symbol=NOC3;CGSNL Gene Name=NUCLEOLAR COMPLEX-ASSOCIATED PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=NOC3;Oryzabase Gene Name Synonym(s)=Nucleolar complex-associated protein 3;Note=CCAAT-binding factor domain containing protein.;Transcript_evidence=AK099764 (DDBJ%2C Best hit);ORF_evidence=NP_178036.2 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=CCAAT-binding factor (IPR005612),Nucleolar complex-associated (IPR011501),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),Nucleolar complex-associated protein 3 (IPR016903);NIAS_FLcDNA=J013094N16;Oryzabase=7371;Expression=AK099764;TENOR=Os06t0498500-01;KEGG=Os06t0498500-01
Chr06	irgsp1_rep	five_prime_UTR	17505127	17505276	.	+	.	Parent=Os06t0498500-01
Chr06	irgsp1_rep	CDS	17505277	17505634	.	+	0	Parent=Os06t0498500-01
Chr06	irgsp1_rep	CDS	17506685	17506878	.	+	2	Parent=Os06t0498500-01
Chr06	irgsp1_rep	CDS	17507493	17507701	.	+	0	Parent=Os06t0498500-01
Chr06	irgsp1_rep	CDS	17507784	17507886	.	+	1	Parent=Os06t0498500-01
Chr06	irgsp1_rep	CDS	17508272	17508435	.	+	0	Parent=Os06t0498500-01
Chr06	irgsp1_rep	CDS	17508698	17508836	.	+	1	Parent=Os06t0498500-01
Chr06	irgsp1_rep	CDS	17509052	17509222	.	+	0	Parent=Os06t0498500-01
Chr06	irgsp1_rep	CDS	17509306	17509442	.	+	0	Parent=Os06t0498500-01
Chr06	irgsp1_rep	CDS	17509589	17509903	.	+	1	Parent=Os06t0498500-01
Chr06	irgsp1_rep	CDS	17510516	17510655	.	+	1	Parent=Os06t0498500-01
Chr06	irgsp1_rep	CDS	17510835	17510932	.	+	2	Parent=Os06t0498500-01
Chr06	irgsp1_rep	CDS	17511019	17511531	.	+	0	Parent=Os06t0498500-01
Chr06	irgsp1_rep	three_prime_UTR	17511532	17511672	.	+	.	Parent=Os06t0498500-01
Chr06	irgsp1_rep	mRNA	17505186	17511961	.	+	.	ID=Os06t0498500-02;Name=Os06t0498500-02;Locus_id=Os06g0498500;CGSNL Gene Symbol=NOC3;CGSNL Gene Name=NUCLEOLAR COMPLEX-ASSOCIATED PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=NOC3;Oryzabase Gene Name Synonym(s)=Nucleolar complex-associated protein 3;Note=CCAAT-binding factor domain containing protein.;Transcript_evidence=AK103794 (DDBJ%2C Best hit),AK121899 (DDBJ%2C Best hit);ORF_evidence=NP_178036.2 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=CCAAT-binding factor (IPR005612),Nucleolar complex-associated (IPR011501),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),Nucleolar complex-associated protein 3 (IPR016903);NIAS_FLcDNA=J033145O08,J033105F16;Oryzabase=7371;TENOR=Os06t0498500-02
Chr06	irgsp1_rep	five_prime_UTR	17505186	17505276	.	+	.	Parent=Os06t0498500-02
Chr06	irgsp1_rep	CDS	17505277	17505634	.	+	0	Parent=Os06t0498500-02
Chr06	irgsp1_rep	CDS	17506685	17506878	.	+	2	Parent=Os06t0498500-02
Chr06	irgsp1_rep	CDS	17507493	17507701	.	+	0	Parent=Os06t0498500-02
Chr06	irgsp1_rep	CDS	17507784	17507886	.	+	1	Parent=Os06t0498500-02
Chr06	irgsp1_rep	CDS	17508272	17508435	.	+	0	Parent=Os06t0498500-02
Chr06	irgsp1_rep	CDS	17508698	17508836	.	+	1	Parent=Os06t0498500-02
Chr06	irgsp1_rep	CDS	17509052	17509222	.	+	0	Parent=Os06t0498500-02
Chr06	irgsp1_rep	CDS	17509306	17509442	.	+	0	Parent=Os06t0498500-02
Chr06	irgsp1_rep	CDS	17509589	17509903	.	+	1	Parent=Os06t0498500-02
Chr06	irgsp1_rep	CDS	17510516	17510655	.	+	1	Parent=Os06t0498500-02
Chr06	irgsp1_rep	CDS	17510835	17510932	.	+	2	Parent=Os06t0498500-02
Chr06	irgsp1_rep	CDS	17511019	17511531	.	+	0	Parent=Os06t0498500-02
Chr06	irgsp1_rep	three_prime_UTR	17511532	17511961	.	+	.	Parent=Os06t0498500-02
Chr06	irgsp1_rep	mRNA	17539962	17542480	.	-	.	ID=Os06t0498800-01;Name=Os06t0498800-01;Locus_id=Os06g0498800;RAP-DB Gene Symbol Synonym(s)=OsMFT1;RAP-DB Gene Name Synonym(s)=MOTHER OF FT AND TFL1;Oryzabase Gene Symbol Synonym(s)=OsMFT1%2C MFT1;Oryzabase Gene Name Synonym(s)=MFT-like gene 1%2C MOTHER OF FT AND TFL1;Note=Homolog of Arabidopsis MOTHER OF FT AND TFL1%2C Regulation of heading and panicle architecture;Transcript_evidence=AK107056;ORF_evidence=Q656A5;InterPro=PEBP-like superfamily (IPR036610),Phosphatidylethanolamine-binding protein (IPR008914),Phosphatidylethanolamine-binding protein%2C eukaryotic (IPR035810),Phosphatidylethanolamine-binding%2C conserved site (IPR001858);NIAS_FLcDNA=002-121-D08;Manual Curation=October 25%2C 2018;Literature_PMID=30124949,16170456;Oryzabase=11877;Expression=AK107056;TENOR=Os06t0498800-01;KEGG=Os06t0498800-01;Subcellular location=nucleus (GO:0005634)
Chr06	irgsp1_rep	five_prime_UTR	17542390	17542480	.	-	.	Parent=Os06t0498800-01
Chr06	irgsp1_rep	CDS	17542195	17542389	.	-	0	Parent=Os06t0498800-01
Chr06	irgsp1_rep	CDS	17541975	17542036	.	-	0	Parent=Os06t0498800-01
Chr06	irgsp1_rep	CDS	17541694	17541734	.	-	1	Parent=Os06t0498800-01
Chr06	irgsp1_rep	CDS	17540126	17540358	.	-	2	Parent=Os06t0498800-01
Chr06	irgsp1_rep	three_prime_UTR	17539962	17540125	.	-	.	Parent=Os06t0498800-01
Chr06	irgsp1_rep	mRNA	17550119	17553429	.	+	.	ID=Os06t0498900-01;Name=Os06t0498900-01;Locus_id=Os06g0498900;Note=GTP-binding protein%2C HSR1-related domain containing protein.;Transcript_evidence=AK065724 (DDBJ%2C Best hit);ORF_evidence=NP_001147795.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=GTP-binding domain%2C HSR1-related (IPR002917);NIAS_FLcDNA=J013041I23;Expression=AK065724;TENOR=Os06t0498900-01;KEGG=Os06t0498900-01
Chr06	irgsp1_rep	five_prime_UTR	17550119	17550191	.	+	.	Parent=Os06t0498900-01
Chr06	irgsp1_rep	CDS	17550192	17551694	.	+	0	Parent=Os06t0498900-01
Chr06	irgsp1_rep	CDS	17552339	17552506	.	+	0	Parent=Os06t0498900-01
Chr06	irgsp1_rep	CDS	17552859	17553233	.	+	0	Parent=Os06t0498900-01
Chr06	irgsp1_rep	three_prime_UTR	17553234	17553429	.	+	.	Parent=Os06t0498900-01
Chr06	irgsp1_rep	mRNA	17555674	17562332	.	+	.	ID=Os06t0499000-01;Name=Os06t0499000-01;Locus_id=Os06g0499000;Note=Conserved hypothetical protein.;Transcript_evidence=AK289226 (DDBJ%2C Best hit);ORF_evidence=B8B2U4 (UniProt);NIAS_FLcDNA=J100068L03;TENOR=Os06t0499000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	17555674	17555784	.	+	.	Parent=Os06t0499000-01
Chr06	irgsp1_rep	CDS	17555785	17556040	.	+	0	Parent=Os06t0499000-01
Chr06	irgsp1_rep	CDS	17556119	17556226	.	+	2	Parent=Os06t0499000-01
Chr06	irgsp1_rep	CDS	17556787	17557052	.	+	2	Parent=Os06t0499000-01
Chr06	irgsp1_rep	CDS	17558077	17558165	.	+	0	Parent=Os06t0499000-01
Chr06	irgsp1_rep	CDS	17558239	17558342	.	+	1	Parent=Os06t0499000-01
Chr06	irgsp1_rep	CDS	17558547	17558652	.	+	2	Parent=Os06t0499000-01
Chr06	irgsp1_rep	CDS	17558744	17558819	.	+	1	Parent=Os06t0499000-01
Chr06	irgsp1_rep	CDS	17558911	17558922	.	+	0	Parent=Os06t0499000-01
Chr06	irgsp1_rep	three_prime_UTR	17558923	17559027	.	+	.	Parent=Os06t0499000-01
Chr06	irgsp1_rep	three_prime_UTR	17559863	17560394	.	+	.	Parent=Os06t0499000-01
Chr06	irgsp1_rep	three_prime_UTR	17562068	17562332	.	+	.	Parent=Os06t0499000-01
Chr06	irgsp1_rep	mRNA	17565550	17566140	.	-	.	ID=Os06t0499100-00;Name=Os06t0499100-00;Locus_id=Os06g0499100;Note=Hypothetical conserved gene.;Transcript_evidence=AK372739 (DDBJ);ORF_evidence=Q656A2 (UniProt);TENOR=Os06t0499100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	17565595	17566140	.	-	0	Parent=Os06t0499100-00
Chr06	irgsp1_rep	three_prime_UTR	17565550	17565594	.	-	.	Parent=Os06t0499100-00
Chr06	irgsp1_rep	mRNA	17573035	17575649	.	-	.	ID=Os06t0499200-01;Name=Os06t0499200-01;Locus_id=Os06g0499200;Note=Non-protein coding transcript.;Transcript_evidence=AK064561 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-112-C10;TENOR=Os06t0499200-01
Chr06	irgsp1_rep	exon	17574419	17575649	.	-	.	Parent=Os06t0499200-01
Chr06	irgsp1_rep	exon	17574148	17574298	.	-	.	Parent=Os06t0499200-01
Chr06	irgsp1_rep	exon	17573035	17573558	.	-	.	Parent=Os06t0499200-01
Chr06	irgsp1_rep	mRNA	17576733	17578982	.	-	.	ID=Os06t0499301-00;Name=Os06t0499301-00;Locus_id=Os06g0499301;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK375387 (DDBJ);ORF_evidence=NP_001174806.1 (RefSeq);InterPro=Pentatricopeptide repeat (IPR002885);TENOR=Os06t0499301-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	17578926	17578982	.	-	.	Parent=Os06t0499301-00
Chr06	irgsp1_rep	CDS	17576997	17578925	.	-	0	Parent=Os06t0499301-00
Chr06	irgsp1_rep	three_prime_UTR	17576733	17576996	.	-	.	Parent=Os06t0499301-00
Chr06	irgsp1_rep	mRNA	17586906	17590657	.	-	.	ID=Os06t0499500-01;Name=Os06t0499500-01;Locus_id=Os06g0499500;CGSNL Gene Symbol=GH3-7;CGSNL Gene Name=GH3-7;Oryzabase Gene Symbol Synonym(s)=OsGH3-7;Note=Similar to Indole-3-acetic acid-amido synthetase GH3.17 (EC 6.3.2.-) (Auxin- responsive GH3-like protein 17) (AtGH3-17).;Transcript_evidence=AK099376 (DDBJ%2C Best hit);ORF_evidence=NP_174134.1 (RefSeq);InterPro=GH3 auxin-responsive promoter (IPR004993);NIAS_FLcDNA=J033067D17;Oryzabase=11626;Expression=AK099376;TENOR=Os06t0499500-01;KEGG=Os06t0499500-01
Chr06	irgsp1_rep	five_prime_UTR	17590542	17590657	.	-	.	Parent=Os06t0499500-01
Chr06	irgsp1_rep	CDS	17590222	17590541	.	-	0	Parent=Os06t0499500-01
Chr06	irgsp1_rep	CDS	17590015	17590116	.	-	1	Parent=Os06t0499500-01
Chr06	irgsp1_rep	CDS	17589047	17589898	.	-	1	Parent=Os06t0499500-01
Chr06	irgsp1_rep	CDS	17587225	17587813	.	-	1	Parent=Os06t0499500-01
Chr06	irgsp1_rep	three_prime_UTR	17586906	17587224	.	-	.	Parent=Os06t0499500-01
Chr06	irgsp1_rep	mRNA	17588955	17590567	.	-	.	ID=Os06t0499500-02;Name=Os06t0499500-02;Locus_id=Os06g0499500;CGSNL Gene Symbol=GH3-7;CGSNL Gene Name=GH3-7;Oryzabase Gene Symbol Synonym(s)=OsGH3-7;Note=Similar to GH3.17%3B indole-3-acetic acid amido synthetase.;Transcript_evidence=AK107353 (DDBJ%2C Best hit);ORF_evidence=Q654M1 (UniProt);InterPro=GH3 auxin-responsive promoter (IPR004993);NIAS_FLcDNA=002-126-H08;Oryzabase=11626;Expression=AK107353;TENOR=Os06t0499500-02;KEGG=Os06t0499500-02
Chr06	irgsp1_rep	five_prime_UTR	17590542	17590567	.	-	.	Parent=Os06t0499500-02
Chr06	irgsp1_rep	CDS	17590222	17590541	.	-	0	Parent=Os06t0499500-02
Chr06	irgsp1_rep	CDS	17590015	17590116	.	-	1	Parent=Os06t0499500-02
Chr06	irgsp1_rep	CDS	17588983	17589898	.	-	1	Parent=Os06t0499500-02
Chr06	irgsp1_rep	three_prime_UTR	17588955	17588982	.	-	.	Parent=Os06t0499500-02
Chr06	irgsp1_rep	mRNA	17586900	17590594	.	-	.	ID=Os06t0499500-03;Name=Os06t0499500-03;Locus_id=Os06g0499500;CGSNL Gene Symbol=GH3-7;CGSNL Gene Name=GH3-7;Oryzabase Gene Symbol Synonym(s)=OsGH3-7;Note=Similar to Indole-3-acetic acid-amido synthetase GH3.17 (EC 6.3.2.-) (Auxin- responsive GH3-like protein 17) (AtGH3-17).;Transcript_evidence=AK064372 (DDBJ%2C Best hit);ORF_evidence=NP_174134.1 (RefSeq);InterPro=GH3 auxin-responsive promoter (IPR004993);NIAS_FLcDNA=002-108-D01;Oryzabase=11626;TENOR=Os06t0499500-03
Chr06	irgsp1_rep	five_prime_UTR	17590542	17590594	.	-	.	Parent=Os06t0499500-03
Chr06	irgsp1_rep	CDS	17590222	17590541	.	-	0	Parent=Os06t0499500-03
Chr06	irgsp1_rep	CDS	17590015	17590116	.	-	1	Parent=Os06t0499500-03
Chr06	irgsp1_rep	CDS	17589047	17589898	.	-	1	Parent=Os06t0499500-03
Chr06	irgsp1_rep	CDS	17587225	17587813	.	-	1	Parent=Os06t0499500-03
Chr06	irgsp1_rep	three_prime_UTR	17586900	17587224	.	-	.	Parent=Os06t0499500-03
Chr06	irgsp1_rep	mRNA	17587202	17590545	.	+	.	ID=Os06t0499550-00;Name=Os06t0499550-00;Locus_id=Os06g0499550;Note=Hypothetical protein.;Transcript_evidence=tplb0043i20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0499550-00
Chr06	irgsp1_rep	five_prime_UTR	17587202	17587806	.	+	.	Parent=Os06t0499550-00
Chr06	irgsp1_rep	five_prime_UTR	17589043	17589793	.	+	.	Parent=Os06t0499550-00
Chr06	irgsp1_rep	CDS	17589794	17589864	.	+	0	Parent=Os06t0499550-00
Chr06	irgsp1_rep	CDS	17589992	17590124	.	+	1	Parent=Os06t0499550-00
Chr06	irgsp1_rep	CDS	17590233	17590545	.	+	0	Parent=Os06t0499550-00
Chr06	irgsp1_rep	mRNA	17597802	17609666	.	-	.	ID=Os06t0499900-01;Name=Os06t0499900-01;Locus_id=Os06g0499900;Note=Similar to Dihydrolipoamide acetyltransferase (E2) subunit of PDC (Fragment).;Transcript_evidence=AK072554 (DDBJ%2C Best hit);ORF_evidence=XP_002876129.1 (RefSeq);GO=Biological Process: pyruvate metabolic process (GO:0006090),Biological Process: metabolic process (GO:0008152),Cellular Component: pyruvate dehydrogenase complex (GO:0045254),Molecular Function: dihydrolipoyllysine-residue acetyltransferase activity (GO:0004742),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Biotin/lipoyl attachment (IPR000089),2-oxoacid dehydrogenase acyltransferase%2C catalytic domain (IPR001078),2-oxo acid dehydrogenase%2C lipoyl-binding site (IPR003016),E3 binding (IPR004167),Dihydrolipoamide acetyltransferase%2C long form (IPR006257),Single hybrid motif (IPR011053),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J023128I09;Expression=AK072554;TENOR=Os06t0499900-01;KEGG=Os06t0499900-01 (EC:2.3.1.12)
Chr06	irgsp1_rep	five_prime_UTR	17609502	17609666	.	-	.	Parent=Os06t0499900-01
Chr06	irgsp1_rep	five_prime_UTR	17607355	17607400	.	-	.	Parent=Os06t0499900-01
Chr06	irgsp1_rep	CDS	17607326	17607354	.	-	0	Parent=Os06t0499900-01
Chr06	irgsp1_rep	CDS	17607173	17607229	.	-	1	Parent=Os06t0499900-01
Chr06	irgsp1_rep	CDS	17606825	17606861	.	-	1	Parent=Os06t0499900-01
Chr06	irgsp1_rep	CDS	17606731	17606764	.	-	0	Parent=Os06t0499900-01
Chr06	irgsp1_rep	CDS	17605486	17605535	.	-	2	Parent=Os06t0499900-01
Chr06	irgsp1_rep	CDS	17605346	17605390	.	-	0	Parent=Os06t0499900-01
Chr06	irgsp1_rep	CDS	17605154	17605227	.	-	0	Parent=Os06t0499900-01
Chr06	irgsp1_rep	CDS	17602364	17602433	.	-	1	Parent=Os06t0499900-01
Chr06	irgsp1_rep	CDS	17601802	17602197	.	-	0	Parent=Os06t0499900-01
Chr06	irgsp1_rep	CDS	17600873	17600933	.	-	0	Parent=Os06t0499900-01
Chr06	irgsp1_rep	CDS	17600754	17600798	.	-	2	Parent=Os06t0499900-01
Chr06	irgsp1_rep	CDS	17600576	17600659	.	-	2	Parent=Os06t0499900-01
Chr06	irgsp1_rep	CDS	17599823	17599899	.	-	2	Parent=Os06t0499900-01
Chr06	irgsp1_rep	CDS	17599682	17599744	.	-	0	Parent=Os06t0499900-01
Chr06	irgsp1_rep	CDS	17599224	17599294	.	-	0	Parent=Os06t0499900-01
Chr06	irgsp1_rep	CDS	17599076	17599136	.	-	1	Parent=Os06t0499900-01
Chr06	irgsp1_rep	CDS	17598940	17599000	.	-	0	Parent=Os06t0499900-01
Chr06	irgsp1_rep	CDS	17598774	17598854	.	-	2	Parent=Os06t0499900-01
Chr06	irgsp1_rep	CDS	17598183	17598241	.	-	2	Parent=Os06t0499900-01
Chr06	irgsp1_rep	three_prime_UTR	17597802	17598182	.	-	.	Parent=Os06t0499900-01
Chr06	irgsp1_rep	mRNA	17609748	17613555	.	+	.	ID=Os06t0500100-01;Name=Os06t0500100-01;Locus_id=Os06g0500100;Note=Conserved hypothetical protein.;Transcript_evidence=AK241750 (DDBJ%2C Best hit);ORF_evidence=NP_001057706.2 (RefSeq);NIAS_FLcDNA=J065203F05;TENOR=Os06t0500100-01;KEGG=Os06t0500100-01
Chr06	irgsp1_rep	five_prime_UTR	17609748	17609900	.	+	.	Parent=Os06t0500100-01
Chr06	irgsp1_rep	CDS	17609901	17609971	.	+	0	Parent=Os06t0500100-01
Chr06	irgsp1_rep	CDS	17610154	17610202	.	+	1	Parent=Os06t0500100-01
Chr06	irgsp1_rep	CDS	17610763	17610786	.	+	0	Parent=Os06t0500100-01
Chr06	irgsp1_rep	three_prime_UTR	17610787	17610995	.	+	.	Parent=Os06t0500100-01
Chr06	irgsp1_rep	three_prime_UTR	17611341	17612621	.	+	.	Parent=Os06t0500100-01
Chr06	irgsp1_rep	three_prime_UTR	17612730	17613555	.	+	.	Parent=Os06t0500100-01
Chr06	irgsp1_rep	mRNA	17617486	17618782	.	-	.	ID=Os06t0500300-00;Name=Os06t0500300-00;Locus_id=Os06g0500300;Note=Conserved hypothetical protein.;Transcript_evidence=FP099278 (DDBJ);ORF_evidence=NP_001057707.2 (RefSeq);TENOR=Os06t0500300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	17618667	17618782	.	-	.	Parent=Os06t0500300-00
Chr06	irgsp1_rep	CDS	17618522	17618666	.	-	0	Parent=Os06t0500300-00
Chr06	irgsp1_rep	CDS	17617679	17618322	.	-	2	Parent=Os06t0500300-00
Chr06	irgsp1_rep	three_prime_UTR	17617486	17617678	.	-	.	Parent=Os06t0500300-00
Chr06	irgsp1_rep	mRNA	17630572	17632343	.	-	.	ID=Os06t0500700-01;Name=Os06t0500700-01;Locus_id=Os06g0500700;Note=CytoChrome P450 family protein.;Transcript_evidence=AK241300 (DDBJ%2C Best hit);ORF_evidence=Q33AM7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J065139M14;TENOR=Os06t0500700-01;KEGG=Os06t0500700-01
Chr06	irgsp1_rep	five_prime_UTR	17632313	17632343	.	-	.	Parent=Os06t0500700-01
Chr06	irgsp1_rep	CDS	17631413	17632312	.	-	0	Parent=Os06t0500700-01
Chr06	irgsp1_rep	CDS	17630671	17631288	.	-	0	Parent=Os06t0500700-01
Chr06	irgsp1_rep	three_prime_UTR	17630572	17630670	.	-	.	Parent=Os06t0500700-01
Chr06	irgsp1_rep	mRNA	17737810	17739487	.	-	.	ID=Os06t0501900-01;Name=Os06t0501900-01;Locus_id=Os06g0501900;CGSNL Gene Symbol=CYP76M9;CGSNL Gene Name=P-450 76M9;Oryzabase Gene Symbol Synonym(s)=CYP76M9;Oryzabase Gene Name Synonym(s)=CytoChrome P450 76M9;Note=CytoChrome P450 family protein.;Transcript_evidence=AK106229 (DDBJ%2C Best hit);ORF_evidence=B6U021 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=002-100-A12;Oryzabase=12422;Expression=AK106229;TENOR=Os06t0501900-01;KEGG=Os06t0501900-01
Chr06	irgsp1_rep	five_prime_UTR	17739430	17739487	.	-	.	Parent=Os06t0501900-01
Chr06	irgsp1_rep	CDS	17737912	17739429	.	-	0	Parent=Os06t0501900-01
Chr06	irgsp1_rep	three_prime_UTR	17737810	17737911	.	-	.	Parent=Os06t0501900-01
Chr06	irgsp1_rep	mRNA	17797607	17798791	.	-	.	ID=Os06t0502800-00;Name=Os06t0502800-00;Locus_id=Os06g0502800;Note=Similar to Plant protein family protein%2C expressed.;Transcript_evidence=BT017734 (DDBJ);ORF_evidence=Q2R4A9 (UniProt);InterPro=GDP-fucose protein O-fucosyltransferase (IPR019378);TENOR=Os06t0502800-00;KEGG=Os06t0502800-00
Chr06	irgsp1_rep	CDS	17798693	17798791	.	-	0	Parent=Os06t0502800-00
Chr06	irgsp1_rep	CDS	17797618	17798253	.	-	0	Parent=Os06t0502800-00
Chr06	irgsp1_rep	three_prime_UTR	17797607	17797617	.	-	.	Parent=Os06t0502800-00
Chr06	irgsp1_rep	mRNA	17812058	17815606	.	+	.	ID=Os06t0502900-01;Name=Os06t0502900-01;Locus_id=Os06g0502900;Note=Similar to DGCR14 protein.;Transcript_evidence=AK120599 (DDBJ%2C Best hit);ORF_evidence=NP_001150845.1 (RefSeq);InterPro=Nuclear protein DGCR14 (IPR019148);NIAS_FLcDNA=J013149F09;Expression=AK120599;TENOR=Os06t0502900-01;KEGG=Os06t0502900-01
Chr06	irgsp1_rep	five_prime_UTR	17812058	17812205	.	+	.	Parent=Os06t0502900-01
Chr06	irgsp1_rep	CDS	17812206	17813720	.	+	0	Parent=Os06t0502900-01
Chr06	irgsp1_rep	three_prime_UTR	17813721	17813737	.	+	.	Parent=Os06t0502900-01
Chr06	irgsp1_rep	three_prime_UTR	17815410	17815606	.	+	.	Parent=Os06t0502900-01
Chr06	irgsp1_rep	mRNA	17812085	17816172	.	+	.	ID=Os06t0502900-02;Name=Os06t0502900-02;Locus_id=Os06g0502900;Note=Similar to DGCR14 protein.;Transcript_evidence=AK103578 (DDBJ%2C Best hit);ORF_evidence=NP_001150845.1 (RefSeq);InterPro=Nuclear protein DGCR14 (IPR019148);NIAS_FLcDNA=J033132P14;Expression=AK103578;TENOR=Os06t0502900-02;KEGG=Os06t0502900-02
Chr06	irgsp1_rep	five_prime_UTR	17812085	17812205	.	+	.	Parent=Os06t0502900-02
Chr06	irgsp1_rep	CDS	17812206	17813720	.	+	0	Parent=Os06t0502900-02
Chr06	irgsp1_rep	three_prime_UTR	17813721	17813737	.	+	.	Parent=Os06t0502900-02
Chr06	irgsp1_rep	three_prime_UTR	17815410	17815475	.	+	.	Parent=Os06t0502900-02
Chr06	irgsp1_rep	three_prime_UTR	17815728	17816172	.	+	.	Parent=Os06t0502900-02
Chr06	irgsp1_rep	mRNA	17822397	17824603	.	-	.	ID=Os06t0503100-01;Name=Os06t0503100-01;Locus_id=Os06g0503100;CGSNL Gene Symbol=ABCG14;CGSNL Gene Name=ABC TRANSPORTER G FAMILY MEMBER 14;Oryzabase Gene Symbol Synonym(s)=OsABCG14;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 14;Note=ABC-2 type transporter domain containing protein.;Transcript_evidence=AK105826 (DDBJ%2C Best hit);ORF_evidence=NP_001152544.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887);InterPro=ABC transporter-like (IPR003439),ABC-2 type transporter (IPR013525);NIAS_FLcDNA=001-203-E02;Oryzabase=11991;Expression=AK105826;TENOR=Os06t0503100-01;KEGG=Os06t0503100-01
Chr06	irgsp1_rep	five_prime_UTR	17824580	17824603	.	-	.	Parent=Os06t0503100-01
Chr06	irgsp1_rep	CDS	17824513	17824579	.	-	0	Parent=Os06t0503100-01
Chr06	irgsp1_rep	CDS	17822705	17824098	.	-	2	Parent=Os06t0503100-01
Chr06	irgsp1_rep	three_prime_UTR	17822397	17822704	.	-	.	Parent=Os06t0503100-01
Chr06	irgsp1_rep	mRNA	17822720	17824424	.	+	.	ID=Os06t0503250-00;Name=Os06t0503250-00;Locus_id=Os06g0503250;Note=Hypothetical protein.;Transcript_evidence=AK361241 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0503250-00
Chr06	irgsp1_rep	five_prime_UTR	17822720	17823428	.	+	.	Parent=Os06t0503250-00
Chr06	irgsp1_rep	CDS	17823429	17824424	.	+	0	Parent=Os06t0503250-00
Chr06	irgsp1_rep	mRNA	17836976	17840764	.	+	.	ID=Os06t0503400-01;Name=Os06t0503400-01;Locus_id=Os06g0503400;Note=Reticulon family protein.;Transcript_evidence=AK073583 (DDBJ%2C Best hit);ORF_evidence=Q306I3 (UniProt);GO=Cellular Component: endoplasmic reticulum (GO:0005783);InterPro=Reticulon (IPR003388);NIAS_FLcDNA=J033051P18;Expression=AK073583;TENOR=Os06t0503400-01;KEGG=Os06t0503400-01
Chr06	irgsp1_rep	five_prime_UTR	17836976	17837031	.	+	.	Parent=Os06t0503400-01
Chr06	irgsp1_rep	CDS	17837032	17837269	.	+	0	Parent=Os06t0503400-01
Chr06	irgsp1_rep	CDS	17839647	17839827	.	+	2	Parent=Os06t0503400-01
Chr06	irgsp1_rep	CDS	17839909	17840050	.	+	1	Parent=Os06t0503400-01
Chr06	irgsp1_rep	CDS	17840146	17840215	.	+	0	Parent=Os06t0503400-01
Chr06	irgsp1_rep	CDS	17840306	17840472	.	+	2	Parent=Os06t0503400-01
Chr06	irgsp1_rep	three_prime_UTR	17840473	17840764	.	+	.	Parent=Os06t0503400-01
Chr06	irgsp1_rep	mRNA	17871084	17874266	.	-	.	ID=Os06t0503600-01;Name=Os06t0503600-01;Locus_id=Os06g0503600;Note=Hypothetical conserved gene.;Transcript_evidence=AK288340 (DDBJ%2C Best hit);ORF_evidence=A3BC48 (UniProt);NIAS_FLcDNA=J090023G12;TENOR=Os06t0503600-01;KEGG=Os06t0503600-01
Chr06	irgsp1_rep	five_prime_UTR	17874140	17874266	.	-	.	Parent=Os06t0503600-01
Chr06	irgsp1_rep	CDS	17873903	17874139	.	-	0	Parent=Os06t0503600-01
Chr06	irgsp1_rep	CDS	17872884	17873042	.	-	0	Parent=Os06t0503600-01
Chr06	irgsp1_rep	three_prime_UTR	17871738	17872883	.	-	.	Parent=Os06t0503600-01
Chr06	irgsp1_rep	three_prime_UTR	17871084	17871349	.	-	.	Parent=Os06t0503600-01
Chr06	irgsp1_rep	mRNA	17847303	17848113	.	-	.	ID=Os06t0503800-00;Name=Os06t0503800-00;Locus_id=Os06g0503800;Note=Hypothetical conserved gene.;Transcript_evidence=AK360044 (DDBJ);ORF_evidence=A2YS76 (UniProt);GO=Biological Process: fatty acid metabolic process (GO:0006631),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: acyl-[acyl-carrier-protein] desaturase activity (GO:0045300),Molecular Function: transition metal ion binding (GO:0046914);InterPro=Fatty acid desaturase%2C type 2 (IPR005067),Ferritin/ribonucleotide reductase-like (IPR009078),Ribonucleotide reductase-related (IPR012348);TENOR=Os06t0503800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	17848038	17848113	.	-	.	Parent=Os06t0503800-00
Chr06	irgsp1_rep	CDS	17847303	17848037	.	-	0	Parent=Os06t0503800-00
Chr06	irgsp1_rep	mRNA	17847225	17848089	.	+	.	ID=Os06t0503850-00;Name=Os06t0503850-00;Locus_id=Os06g0503850;Note=Similar to Acyl-[acyl-carrier-protein] desaturase 7%2C chloroplastic.;Transcript_evidence=EU945314 (DDBJ);ORF_evidence=A2YS76 (UniProt);TENOR=Os06t0503850-00
Chr06	irgsp1_rep	CDS	17847225	17847482	.	+	0	Parent=Os06t0503850-00
Chr06	irgsp1_rep	three_prime_UTR	17847483	17848089	.	+	.	Parent=Os06t0503850-00
Chr06	irgsp1_rep	mRNA	17859496	17863417	.	+	.	ID=Os06t0503900-01;Name=Os06t0503900-01;Locus_id=Os06g0503900;Oryzabase Gene Symbol Synonym(s)=OsCAF1-8%2C OsCAF1K;Oryzabase Gene Name Synonym(s)=CCR4-associated factor 1-8%2C carbon catabolite repressor 4-associated factor 1-8%2C CCR4-associated factor 1K%2C carbon catabolite repressor 4-associated factor 1K;Note=Hypothetical conserved gene.;Transcript_evidence=AK288884 (DDBJ%2C Best hit);ORF_evidence=B9FTH1 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676);InterPro=Ribonuclease CAF1 (IPR006941),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J090079K05;Oryzabase=18267;TENOR=Os06t0503900-01;KEGG=Os06t0503900-01
Chr06	irgsp1_rep	five_prime_UTR	17859496	17860782	.	+	.	Parent=Os06t0503900-01
Chr06	irgsp1_rep	CDS	17860783	17861628	.	+	0	Parent=Os06t0503900-01
Chr06	irgsp1_rep	three_prime_UTR	17861629	17863417	.	+	.	Parent=Os06t0503900-01
Chr06	irgsp1_rep	mRNA	17869243	17869929	.	-	.	ID=Os06t0504100-00;Name=Os06t0504100-00;Locus_id=Os06g0504100;CGSNL Gene Symbol=MADS75;CGSNL Gene Name=MADS BOX GENE 75;Oryzabase Gene Symbol Synonym(s)=OsMADS75;Oryzabase Gene Name Synonym(s)=MADS box gene75%2C MADS box gene 75%2C MADS-box transcription factor 75;Note=Similar to SRF-type transcription factor family protein%2C expressed.;Transcript_evidence=EU959638 (DDBJ);ORF_evidence=Q2QT50 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box (IPR002100);Oryzabase=12311;TENOR=Os06t0504100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	17869876	17869929	.	-	.	Parent=Os06t0504100-00
Chr06	irgsp1_rep	CDS	17869243	17869875	.	-	0	Parent=Os06t0504100-00
Chr06	irgsp1_rep	mRNA	17885715	17889958	.	-	.	ID=Os06t0504450-00;Name=Os06t0504450-00;Locus_id=Os06g0504450;Note=Conserved hypothetical protein.;Transcript_evidence=AK288763 (DDBJ%2C Secondary hit);ORF_evidence=B9EWT4 (UniProt);TENOR=Os06t0504450-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	17889588	17889958	.	-	.	Parent=Os06t0504450-00
Chr06	irgsp1_rep	five_prime_UTR	17888058	17888209	.	-	.	Parent=Os06t0504450-00
Chr06	irgsp1_rep	five_prime_UTR	17887423	17888044	.	-	.	Parent=Os06t0504450-00
Chr06	irgsp1_rep	CDS	17887237	17887422	.	-	0	Parent=Os06t0504450-00
Chr06	irgsp1_rep	three_prime_UTR	17886220	17887236	.	-	.	Parent=Os06t0504450-00
Chr06	irgsp1_rep	three_prime_UTR	17885715	17886123	.	-	.	Parent=Os06t0504450-00
Chr06	irgsp1_rep	mRNA	17913440	17913511	.	-	.	ID=Os06t0504850-00;Name=Os06t0504850-00;Locus_id=Os06g0504850;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0504850-00
Chr06	irgsp1_rep	exon	17913440	17913511	.	-	.	Parent=Os06t0504850-00
Chr06	irgsp1_rep	mRNA	17915923	17917083	.	-	.	ID=Os06t0504900-00;Name=Os06t0504900-00;Locus_id=Os06g0504900;CGSNL Gene Symbol=WRKY31;CGSNL Gene Name=WRKY GENE 31;Oryzabase Gene Symbol Synonym(s)=OsWRKY31;Oryzabase Gene Name Synonym(s)=Rice WRKY gene31;Note=Similar to WRKY transcription factor 31.;Transcript_evidence=EU665437 (DDBJ);ORF_evidence=Q6IEQ0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6544;TENOR=Os06t0504900-00;KEGG=Os06t0504900-00
Chr06	irgsp1_rep	CDS	17915923	17917083	.	-	0	Parent=Os06t0504900-00
Chr06	irgsp1_rep	mRNA	17938656	17940296	.	-	.	ID=Os06t0505100-00;Name=Os06t0505100-00;Locus_id=Os06g0505100;Note=Hypothetical conserved gene.;Transcript_evidence=EU950600 (DDBJ);ORF_evidence=NP_001057715.1 (RefSeq);TENOR=Os06t0505100-00;KEGG=Os06t0505100-00
Chr06	irgsp1_rep	CDS	17940084	17940296	.	-	0	Parent=Os06t0505100-00
Chr06	irgsp1_rep	CDS	17939862	17939987	.	-	0	Parent=Os06t0505100-00
Chr06	irgsp1_rep	CDS	17938656	17939579	.	-	0	Parent=Os06t0505100-00
Chr06	irgsp1_rep	mRNA	17945588	17945857	.	-	.	ID=Os06t0505202-00;Name=Os06t0505202-00;Locus_id=Os06g0505202;Note=Hypothetical conserved gene.;Transcript_evidence=EU947364 (DDBJ);ORF_evidence=NP_001057715.1 (RefSeq);TENOR=Os06t0505202-00;KEGG=Os06t0505202-00
Chr06	irgsp1_rep	five_prime_UTR	17945732	17945857	.	-	.	Parent=Os06t0505202-00
Chr06	irgsp1_rep	CDS	17945588	17945731	.	-	0	Parent=Os06t0505202-00
Chr06	irgsp1_rep	mRNA	17947253	17969877	.	-	.	ID=Os06t0505302-00;Name=Os06t0505302-00;Locus_id=Os06g0505302;Note=Similar to SWEETIE (SWEETIE)%3B binding.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_176885.7 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);TENOR=Os06t0505302-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	17969769	17969877	.	-	0	Parent=Os06t0505302-00
Chr06	irgsp1_rep	CDS	17969208	17969314	.	-	2	Parent=Os06t0505302-00
Chr06	irgsp1_rep	CDS	17968581	17968817	.	-	0	Parent=Os06t0505302-00
Chr06	irgsp1_rep	CDS	17968380	17968469	.	-	0	Parent=Os06t0505302-00
Chr06	irgsp1_rep	CDS	17968225	17968312	.	-	0	Parent=Os06t0505302-00
Chr06	irgsp1_rep	CDS	17965050	17965171	.	-	2	Parent=Os06t0505302-00
Chr06	irgsp1_rep	CDS	17964040	17964159	.	-	0	Parent=Os06t0505302-00
Chr06	irgsp1_rep	CDS	17963588	17963677	.	-	0	Parent=Os06t0505302-00
Chr06	irgsp1_rep	CDS	17963422	17963502	.	-	0	Parent=Os06t0505302-00
Chr06	irgsp1_rep	CDS	17963140	17963208	.	-	0	Parent=Os06t0505302-00
Chr06	irgsp1_rep	CDS	17961648	17961773	.	-	0	Parent=Os06t0505302-00
Chr06	irgsp1_rep	CDS	17960708	17960811	.	-	0	Parent=Os06t0505302-00
Chr06	irgsp1_rep	CDS	17959815	17959947	.	-	1	Parent=Os06t0505302-00
Chr06	irgsp1_rep	CDS	17959628	17959734	.	-	0	Parent=Os06t0505302-00
Chr06	irgsp1_rep	CDS	17958580	17958696	.	-	1	Parent=Os06t0505302-00
Chr06	irgsp1_rep	CDS	17958328	17958495	.	-	1	Parent=Os06t0505302-00
Chr06	irgsp1_rep	CDS	17957289	17957375	.	-	1	Parent=Os06t0505302-00
Chr06	irgsp1_rep	CDS	17957110	17957203	.	-	1	Parent=Os06t0505302-00
Chr06	irgsp1_rep	CDS	17955958	17956080	.	-	0	Parent=Os06t0505302-00
Chr06	irgsp1_rep	CDS	17955177	17955248	.	-	0	Parent=Os06t0505302-00
Chr06	irgsp1_rep	CDS	17954993	17955097	.	-	0	Parent=Os06t0505302-00
Chr06	irgsp1_rep	CDS	17954049	17954137	.	-	0	Parent=Os06t0505302-00
Chr06	irgsp1_rep	CDS	17953398	17953554	.	-	1	Parent=Os06t0505302-00
Chr06	irgsp1_rep	CDS	17952195	17952344	.	-	0	Parent=Os06t0505302-00
Chr06	irgsp1_rep	CDS	17951782	17951831	.	-	0	Parent=Os06t0505302-00
Chr06	irgsp1_rep	CDS	17951556	17951655	.	-	1	Parent=Os06t0505302-00
Chr06	irgsp1_rep	CDS	17951422	17951478	.	-	0	Parent=Os06t0505302-00
Chr06	irgsp1_rep	CDS	17948717	17948784	.	-	0	Parent=Os06t0505302-00
Chr06	irgsp1_rep	CDS	17947253	17947370	.	-	1	Parent=Os06t0505302-00
Chr06	irgsp1_rep	mRNA	17973895	17978685	.	+	.	ID=Os06t0505400-01;Name=Os06t0505400-01;Locus_id=Os06g0505400;Note=Abortive infection protein family protein.;Transcript_evidence=AK068107 (DDBJ%2C Best hit);ORF_evidence=E5GBE0 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=CAAX amino terminal protease (IPR003675);NIAS_FLcDNA=J013130C21;Expression=AK068107;TENOR=Os06t0505400-01;KEGG=Os06t0505400-01
Chr06	irgsp1_rep	five_prime_UTR	17973895	17973950	.	+	.	Parent=Os06t0505400-01
Chr06	irgsp1_rep	CDS	17973951	17974085	.	+	0	Parent=Os06t0505400-01
Chr06	irgsp1_rep	CDS	17974167	17974379	.	+	0	Parent=Os06t0505400-01
Chr06	irgsp1_rep	CDS	17976147	17976230	.	+	0	Parent=Os06t0505400-01
Chr06	irgsp1_rep	CDS	17977424	17978092	.	+	0	Parent=Os06t0505400-01
Chr06	irgsp1_rep	three_prime_UTR	17978093	17978685	.	+	.	Parent=Os06t0505400-01
Chr06	irgsp1_rep	mRNA	17981829	17982367	.	-	.	ID=Os06t0505501-00;Name=Os06t0505501-00;Locus_id=Os06g0505501;Note=Non-protein coding transcript.;Transcript_evidence=CT836209 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os06t0505501-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	exon	17981829	17982367	.	-	.	Parent=Os06t0505501-00
Chr06	irgsp1_rep	mRNA	17984211	17986882	.	+	.	ID=Os06t0505700-01;Name=Os06t0505700-01;Locus_id=Os06g0505700;CGSNL Gene Symbol=AGP26;CGSNL Gene Name=ARABINOGALACTAN PROTEIN 26;Oryzabase Gene Symbol Synonym(s)=OsAGP26;Oryzabase Gene Name Synonym(s)=Arabinogalactan protein 26;Note=Similar to AGP16.;Transcript_evidence=AK121505 (DDBJ%2C Best hit);ORF_evidence=B6T179 (UniProt);InterPro=Arabinogalactan peptide%2C AGP (IPR009424);NIAS_FLcDNA=J033022N03;Oryzabase=11319;TENOR=Os06t0505700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	17984211	17984698	.	+	.	Parent=Os06t0505700-01
Chr06	irgsp1_rep	CDS	17984699	17984714	.	+	0	Parent=Os06t0505700-01
Chr06	irgsp1_rep	CDS	17986629	17986735	.	+	2	Parent=Os06t0505700-01
Chr06	irgsp1_rep	three_prime_UTR	17986736	17986882	.	+	.	Parent=Os06t0505700-01
Chr06	irgsp1_rep	mRNA	17993105	17993851	.	-	.	ID=Os06t0505900-01;Name=Os06t0505900-01;Locus_id=Os06g0505900;Note=Hypothetical protein.;Transcript_evidence=AK109247 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-156-H01;Expression=AK109247;TENOR=Os06t0505900-01;KEGG=Os06t0505900-01
Chr06	irgsp1_rep	five_prime_UTR	17993618	17993851	.	-	.	Parent=Os06t0505900-01
Chr06	irgsp1_rep	CDS	17993168	17993617	.	-	0	Parent=Os06t0505900-01
Chr06	irgsp1_rep	three_prime_UTR	17993105	17993167	.	-	.	Parent=Os06t0505900-01
Chr06	irgsp1_rep	mRNA	17993237	17995212	.	+	.	ID=Os06t0506000-01;Name=Os06t0506000-01;Locus_id=Os06g0506000;Note=Conserved hypothetical protein.;Transcript_evidence=AK108056 (DDBJ%2C Best hit);ORF_evidence=B9FTH4 (UniProt);NIAS_FLcDNA=002-137-H12;Expression=AK108056;TENOR=Os06t0506000-01;KEGG=Os06t0506000-01
Chr06	irgsp1_rep	five_prime_UTR	17993237	17993332	.	+	.	Parent=Os06t0506000-01
Chr06	irgsp1_rep	CDS	17993333	17993626	.	+	0	Parent=Os06t0506000-01
Chr06	irgsp1_rep	CDS	17994669	17995166	.	+	0	Parent=Os06t0506000-01
Chr06	irgsp1_rep	three_prime_UTR	17995167	17995212	.	+	.	Parent=Os06t0506000-01
Chr06	irgsp1_rep	mRNA	17997701	18000859	.	+	.	ID=Os06t0506100-01;Name=Os06t0506100-01;Locus_id=Os06g0506100;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK107403 (DDBJ%2C Best hit);ORF_evidence=A2YDE0 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-127-D12;Expression=AK107403;TENOR=Os06t0506100-01;KEGG=Os06t0506100-01
Chr06	irgsp1_rep	five_prime_UTR	17997701	17997761	.	+	.	Parent=Os06t0506100-01
Chr06	irgsp1_rep	CDS	17997762	18000062	.	+	0	Parent=Os06t0506100-01
Chr06	irgsp1_rep	three_prime_UTR	18000063	18000277	.	+	.	Parent=Os06t0506100-01
Chr06	irgsp1_rep	three_prime_UTR	18000376	18000534	.	+	.	Parent=Os06t0506100-01
Chr06	irgsp1_rep	three_prime_UTR	18000642	18000859	.	+	.	Parent=Os06t0506100-01
Chr06	irgsp1_rep	mRNA	18002577	18008223	.	+	.	ID=Os06t0506150-01;Name=Os06t0506150-01;Locus_id=Os06g0506150;Note=Conserved hypothetical protein.;Transcript_evidence=AK288420 (DDBJ%2C Best hit);ORF_evidence=NP_001174810.1 (RefSeq);NIAS_FLcDNA=J090031O22;TENOR=Os06t0506150-01;KEGG=Os06t0506150-01
Chr06	irgsp1_rep	five_prime_UTR	18002577	18002646	.	+	.	Parent=Os06t0506150-01
Chr06	irgsp1_rep	CDS	18002647	18003000	.	+	0	Parent=Os06t0506150-01
Chr06	irgsp1_rep	three_prime_UTR	18003001	18006345	.	+	.	Parent=Os06t0506150-01
Chr06	irgsp1_rep	three_prime_UTR	18006452	18006577	.	+	.	Parent=Os06t0506150-01
Chr06	irgsp1_rep	three_prime_UTR	18007843	18008223	.	+	.	Parent=Os06t0506150-01
Chr06	irgsp1_rep	mRNA	18002712	18009339	.	-	.	ID=Os06t0506200-01;Name=Os06t0506200-01;Locus_id=Os06g0506200;Note=Protein of unknown function DUF250 domain containing protein.;Transcript_evidence=AK067824 (DDBJ%2C Best hit);ORF_evidence=B6UA14 (UniProt);InterPro=Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=J013119D13;Expression=AK067824;TENOR=Os06t0506200-01;KEGG=Os06t0506200-01
Chr06	irgsp1_rep	five_prime_UTR	18009150	18009339	.	-	.	Parent=Os06t0506200-01
Chr06	irgsp1_rep	five_prime_UTR	18008965	18009043	.	-	.	Parent=Os06t0506200-01
Chr06	irgsp1_rep	five_prime_UTR	18006532	18006552	.	-	.	Parent=Os06t0506200-01
Chr06	irgsp1_rep	CDS	18006411	18006531	.	-	0	Parent=Os06t0506200-01
Chr06	irgsp1_rep	CDS	18006126	18006310	.	-	2	Parent=Os06t0506200-01
Chr06	irgsp1_rep	CDS	18005983	18006050	.	-	0	Parent=Os06t0506200-01
Chr06	irgsp1_rep	CDS	18005618	18005750	.	-	1	Parent=Os06t0506200-01
Chr06	irgsp1_rep	CDS	18005118	18005291	.	-	0	Parent=Os06t0506200-01
Chr06	irgsp1_rep	three_prime_UTR	18004205	18005117	.	-	.	Parent=Os06t0506200-01
Chr06	irgsp1_rep	three_prime_UTR	18002712	18002977	.	-	.	Parent=Os06t0506200-01
Chr06	irgsp1_rep	mRNA	18015556	18017695	.	-	.	ID=Os06t0506600-01;Name=Os06t0506600-01;Locus_id=Os06g0506600;CGSNL Gene Symbol=UBC17;CGSNL Gene Name=UBIQUITIN-CONJUGATING ENZYME 17;Oryzabase Gene Symbol Synonym(s)=OsUBC17;Oryzabase Gene Name Synonym(s)=Ubiquitin-conjugating enzyme 17;Note=Similar to Ubiquitin carrier protein.;Transcript_evidence=AK066232 (DDBJ%2C Best hit);ORF_evidence=A3BC59 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135),Ubiquitin-conjugating enzyme%2C active site (IPR023313);NIAS_FLcDNA=J013057M05;Oryzabase=19561;TENOR=Os06t0506600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	18016340	18017695	.	-	.	Parent=Os06t0506600-01
Chr06	irgsp1_rep	CDS	18016130	18016339	.	-	0	Parent=Os06t0506600-01
Chr06	irgsp1_rep	three_prime_UTR	18015556	18016129	.	-	.	Parent=Os06t0506600-01
Chr06	irgsp1_rep	mRNA	18015717	18017657	.	+	.	ID=Os06t0506850-00;Name=Os06t0506850-00;Locus_id=Os06g0506850;Note=Non-protein coding transcript.;Transcript_evidence=BT086907 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0506850-00
Chr06	irgsp1_rep	exon	18015717	18015879	.	+	.	Parent=Os06t0506850-00
Chr06	irgsp1_rep	exon	18016159	18016229	.	+	.	Parent=Os06t0506850-00
Chr06	irgsp1_rep	exon	18016637	18016782	.	+	.	Parent=Os06t0506850-00
Chr06	irgsp1_rep	exon	18017591	18017657	.	+	.	Parent=Os06t0506850-00
Chr06	irgsp1_rep	mRNA	18065964	18066543	.	-	.	ID=Os06t0507100-01;Name=Os06t0507100-01;Locus_id=Os06g0507100;Oryzabase Gene Symbol Synonym(s)=Prol-16%2C OsEnS-87%2C EnS-87%2C pro16.1;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 87;Note=Similar to Prolamin.;Transcript_evidence=AK242322 (DDBJ%2C Best hit);ORF_evidence=D6BV11 (UniProt);GO=Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Gliadin/LMW glutenin (IPR001954),Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Bifunctional trypsin/alpha-amylase inhibitor (IPR013771),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=J075196P21;Oryzabase=15150;TENOR=Os06t0507100-01;KEGG=Os06t0507100-01
Chr06	irgsp1_rep	five_prime_UTR	18066506	18066543	.	-	.	Parent=Os06t0507100-01
Chr06	irgsp1_rep	CDS	18066029	18066505	.	-	0	Parent=Os06t0507100-01
Chr06	irgsp1_rep	three_prime_UTR	18065964	18066028	.	-	.	Parent=Os06t0507100-01
Chr06	irgsp1_rep	mRNA	18067619	18068240	.	-	.	ID=Os06t0507150-01;Name=Os06t0507150-01;Locus_id=Os06g0507150;Note=Hypothetical conserved gene.;Transcript_evidence=AK242207 (DDBJ%2C Best hit);ORF_evidence=NP_001174812.1 (RefSeq);NIAS_FLcDNA=J075170A14;TENOR=Os06t0507150-01;KEGG=Os06t0507150-01
Chr06	irgsp1_rep	five_prime_UTR	18068189	18068240	.	-	.	Parent=Os06t0507150-01
Chr06	irgsp1_rep	CDS	18067784	18068188	.	-	0	Parent=Os06t0507150-01
Chr06	irgsp1_rep	three_prime_UTR	18067619	18067783	.	-	.	Parent=Os06t0507150-01
Chr06	irgsp1_rep	mRNA	18072258	18072890	.	-	.	ID=Os06t0507200-01;Name=Os06t0507200-01;Locus_id=Os06g0507200;Oryzabase Gene Symbol Synonym(s)=Prol-17%2C OsEnS-88%2C pro16.2%2C PROLM24;Oryzabase Gene Name Synonym(s)=16 kDa prolamin%2C cystein-rich 16.6-kDa prolamin%2C endosperm-specific gene 88;Note=Bifunctional inhibitor/plant lipid transfer protein/seed storage domain containing protein.;Transcript_evidence=AK107785 (DDBJ%2C Best hit);ORF_evidence=B7F9G2 (UniProt);GO=Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Gliadin/LMW glutenin (IPR001954),Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Bifunctional trypsin/alpha-amylase inhibitor (IPR013771),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=002-133-C11;Oryzabase=15151;Expression=AK107785;TENOR=Os06t0507200-01;KEGG=Os06t0507200-01
Chr06	irgsp1_rep	five_prime_UTR	18072826	18072890	.	-	.	Parent=Os06t0507200-01
Chr06	irgsp1_rep	CDS	18072376	18072825	.	-	0	Parent=Os06t0507200-01
Chr06	irgsp1_rep	three_prime_UTR	18072258	18072375	.	-	.	Parent=Os06t0507200-01
Chr06	irgsp1_rep	mRNA	18079011	18079819	.	-	.	ID=Os06t0507300-01;Name=Os06t0507300-01;Locus_id=Os06g0507300;Oryzabase Gene Name Synonym(s)=Similar to GAMYB-binding protein;Note=Similar to GAMYB-binding protein.;Transcript_evidence=AK111324 (DDBJ%2C Best hit);ORF_evidence=Q6J6M8 (UniProt);NIAS_FLcDNA=002-181-D08;Oryzabase=23375;Expression=AK111324;TENOR=Os06t0507300-01;KEGG=Os06t0507300-01
Chr06	irgsp1_rep	five_prime_UTR	18079687	18079819	.	-	.	Parent=Os06t0507300-01
Chr06	irgsp1_rep	CDS	18079081	18079686	.	-	0	Parent=Os06t0507300-01
Chr06	irgsp1_rep	three_prime_UTR	18079011	18079080	.	-	.	Parent=Os06t0507300-01
Chr06	irgsp1_rep	mRNA	18081028	18086698	.	-	.	ID=Os06t0507400-01;Name=Os06t0507400-01;Locus_id=Os06g0507400;Note=Similar to GAMYB-binding protein (Fragment).;Transcript_evidence=AK066411 (DDBJ%2C Best hit);ORF_evidence=NP_001148937.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),BTB/POZ fold (IPR011333),BTB/Kelch-associated (IPR011705),BTB/POZ (IPR013069);NIAS_FLcDNA=J013066L01;Expression=AK066411;TENOR=Os06t0507400-01;KEGG=Os06t0507400-01
Chr06	irgsp1_rep	five_prime_UTR	18086437	18086698	.	-	.	Parent=Os06t0507400-01
Chr06	irgsp1_rep	CDS	18086226	18086436	.	-	0	Parent=Os06t0507400-01
Chr06	irgsp1_rep	CDS	18083659	18083784	.	-	2	Parent=Os06t0507400-01
Chr06	irgsp1_rep	CDS	18082955	18083073	.	-	2	Parent=Os06t0507400-01
Chr06	irgsp1_rep	CDS	18082797	18082860	.	-	0	Parent=Os06t0507400-01
Chr06	irgsp1_rep	CDS	18082167	18082446	.	-	2	Parent=Os06t0507400-01
Chr06	irgsp1_rep	CDS	18081274	18082084	.	-	1	Parent=Os06t0507400-01
Chr06	irgsp1_rep	three_prime_UTR	18081028	18081273	.	-	.	Parent=Os06t0507400-01
Chr06	irgsp1_rep	mRNA	18116416	18117685	.	-	.	ID=Os06t0507900-01;Name=Os06t0507900-01;Locus_id=Os06g0507900;Note=Conserved hypothetical protein.;Transcript_evidence=AK061326 (DDBJ%2C Best hit);ORF_evidence=A3BC63 (UniProt);NIAS_FLcDNA=006-302-H08;TENOR=Os06t0507900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	18117685	18117685	.	-	.	Parent=Os06t0507900-01
Chr06	irgsp1_rep	CDS	18116695	18117684	.	-	0	Parent=Os06t0507900-01
Chr06	irgsp1_rep	three_prime_UTR	18116416	18116694	.	-	.	Parent=Os06t0507900-01
Chr06	irgsp1_rep	mRNA	18145794	18146262	.	-	.	ID=Os06t0508700-01;Name=Os06t0508700-01;Locus_id=Os06g0508700;Oryzabase Gene Symbol Synonym(s)=MetRS%2C MRS;Oryzabase Gene Name Synonym(s)=methionyl-tRNA synthetase;Note=Similar to methionyl-tRNA synthetase-like protein (ISS).;Transcript_evidence=AK059433 (DDBJ%2C Best hit);ORF_evidence=XP_003081255.1 (RefSeq);InterPro=Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=001-027-F07;Oryzabase=13860;TENOR=Os06t0508700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	18146257	18146262	.	-	.	Parent=Os06t0508700-01
Chr06	irgsp1_rep	CDS	18146221	18146256	.	-	0	Parent=Os06t0508700-01
Chr06	irgsp1_rep	CDS	18145897	18146127	.	-	0	Parent=Os06t0508700-01
Chr06	irgsp1_rep	three_prime_UTR	18145794	18145896	.	-	.	Parent=Os06t0508700-01
Chr06	irgsp1_rep	mRNA	18155995	18156576	.	+	.	ID=Os06t0508800-01;Name=Os06t0508800-01;Locus_id=Os06g0508800;Note=Conserved hypothetical protein.;Transcript_evidence=AK063735 (DDBJ%2C Best hit);ORF_evidence=B9FTI0 (UniProt);NIAS_FLcDNA=001-120-E12;TENOR=Os06t0508800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	18155995	18156399	.	+	.	Parent=Os06t0508800-01
Chr06	irgsp1_rep	CDS	18156400	18156561	.	+	0	Parent=Os06t0508800-01
Chr06	irgsp1_rep	three_prime_UTR	18156562	18156576	.	+	.	Parent=Os06t0508800-01
Chr06	irgsp1_rep	mRNA	18157165	18157604	.	-	.	ID=Os06t0508950-00;Name=Os06t0508950-00;Locus_id=Os06g0508950;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os06t0508950-00
Chr06	irgsp1_rep	CDS	18157334	18157604	.	-	0	Parent=Os06t0508950-00
Chr06	irgsp1_rep	CDS	18157165	18157277	.	-	2	Parent=Os06t0508950-00
Chr06	irgsp1_rep	mRNA	18159081	18165296	.	-	.	ID=Os06t0509100-01;Name=Os06t0509100-01;Locus_id=Os06g0509100;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK072143 (DDBJ%2C Best hit);ORF_evidence=C5IFK8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013129F03;Expression=AK072143;TENOR=Os06t0509100-01;KEGG=Os06t0509100-01 (EC:2.7.11.24)
Chr06	irgsp1_rep	five_prime_UTR	18164392	18165296	.	-	.	Parent=Os06t0509100-01
Chr06	irgsp1_rep	five_prime_UTR	18164205	18164269	.	-	.	Parent=Os06t0509100-01
Chr06	irgsp1_rep	CDS	18164110	18164204	.	-	0	Parent=Os06t0509100-01
Chr06	irgsp1_rep	CDS	18163983	18164007	.	-	1	Parent=Os06t0509100-01
Chr06	irgsp1_rep	CDS	18163775	18163813	.	-	0	Parent=Os06t0509100-01
Chr06	irgsp1_rep	CDS	18163479	18163625	.	-	0	Parent=Os06t0509100-01
Chr06	irgsp1_rep	CDS	18163082	18163105	.	-	0	Parent=Os06t0509100-01
Chr06	irgsp1_rep	three_prime_UTR	18163027	18163081	.	-	.	Parent=Os06t0509100-01
Chr06	irgsp1_rep	three_prime_UTR	18162167	18162250	.	-	.	Parent=Os06t0509100-01
Chr06	irgsp1_rep	three_prime_UTR	18161907	18161987	.	-	.	Parent=Os06t0509100-01
Chr06	irgsp1_rep	three_prime_UTR	18160217	18161768	.	-	.	Parent=Os06t0509100-01
Chr06	irgsp1_rep	three_prime_UTR	18159286	18159369	.	-	.	Parent=Os06t0509100-01
Chr06	irgsp1_rep	three_prime_UTR	18159081	18159189	.	-	.	Parent=Os06t0509100-01
Chr06	irgsp1_rep	mRNA	18160075	18164391	.	-	.	ID=Os06t0509100-02;Name=Os06t0509100-02;Locus_id=Os06g0509100;Note=Similar to Mitogen-activated protein kinase 17.;Transcript_evidence=AK100292 (DDBJ%2C Best hit);ORF_evidence=C5IFK8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023075L12;Expression=AK100292;TENOR=Os06t0509100-02;KEGG=Os06t0509100-02 (EC:2.7.11.24)
Chr06	irgsp1_rep	five_prime_UTR	18164110	18164391	.	-	.	Parent=Os06t0509100-02
Chr06	irgsp1_rep	five_prime_UTR	18163653	18164007	.	-	.	Parent=Os06t0509100-02
Chr06	irgsp1_rep	CDS	18163479	18163652	.	-	0	Parent=Os06t0509100-02
Chr06	irgsp1_rep	CDS	18163082	18163105	.	-	0	Parent=Os06t0509100-02
Chr06	irgsp1_rep	three_prime_UTR	18163027	18163081	.	-	.	Parent=Os06t0509100-02
Chr06	irgsp1_rep	three_prime_UTR	18162167	18162250	.	-	.	Parent=Os06t0509100-02
Chr06	irgsp1_rep	three_prime_UTR	18160075	18161987	.	-	.	Parent=Os06t0509100-02
Chr06	irgsp1_rep	mRNA	18186931	18188528	.	+	.	ID=Os06t0509600-00;Name=Os06t0509600-00;Locus_id=Os06g0509600;Note=Glycoside hydrolase%2C family 28 domain containing protein.;Transcript_evidence=BT043275 (DDBJ);ORF_evidence=Q5Z4W9 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);TENOR=Os06t0509600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	18186931	18187340	.	+	0	Parent=Os06t0509600-00
Chr06	irgsp1_rep	CDS	18187402	18187972	.	+	1	Parent=Os06t0509600-00
Chr06	irgsp1_rep	CDS	18188247	18188528	.	+	0	Parent=Os06t0509600-00
Chr06	irgsp1_rep	mRNA	18201961	18202883	.	-	.	ID=Os06t0509900-00;Name=Os06t0509900-00;Locus_id=Os06g0509900;CGSNL Gene Symbol=THI2;CGSNL Gene Name=THIONIN 2;Oryzabase Gene Symbol Synonym(s)=OsTHI1%2C THI1%2C Osthi2%2C thi2%2C OsTHION1%2C THION1;Oryzabase Gene Name Synonym(s)=Thionin 1%2C thionin 2;Note=Similar to Thionin.;Transcript_evidence=FP101054 (DDBJ);ORF_evidence=A2YDH5 (UniProt);GO=Biological Process: defense response (GO:0006952);InterPro=Thionin (IPR001010);Oryzabase=19257;TENOR=Os06t0509900-00
Chr06	irgsp1_rep	CDS	18202646	18202883	.	-	0	Parent=Os06t0509900-00
Chr06	irgsp1_rep	CDS	18202378	18202446	.	-	2	Parent=Os06t0509900-00
Chr06	irgsp1_rep	CDS	18202173	18202273	.	-	2	Parent=Os06t0509900-00
Chr06	irgsp1_rep	three_prime_UTR	18201961	18202172	.	-	.	Parent=Os06t0509900-00
Chr06	irgsp1_rep	mRNA	18217605	18218995	.	+	.	ID=Os06t0510200-01;Name=Os06t0510200-01;Locus_id=Os06g0510200;Note=Hypothetical protein.;Transcript_evidence=AK111004 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-174-F03;Expression=AK111004;TENOR=Os06t0510200-01;KEGG=Os06t0510200-01
Chr06	irgsp1_rep	five_prime_UTR	18217605	18217937	.	+	.	Parent=Os06t0510200-01
Chr06	irgsp1_rep	CDS	18217938	18218642	.	+	0	Parent=Os06t0510200-01
Chr06	irgsp1_rep	three_prime_UTR	18218643	18218995	.	+	.	Parent=Os06t0510200-01
Chr06	irgsp1_rep	mRNA	18524688	18525556	.	-	.	ID=Os06t0513050-01;Name=Os06t0513050-01;Locus_id=Os06g0513050;Oryzabase Gene Symbol Synonym(s)=OsTHI3%2C THI3%2C Osthi1%2C thi1%2C OsTHION3%2C THION3;Oryzabase Gene Name Synonym(s)=Thionin 3%2C thionin 1;Note=Conserved hypothetical protein.;Transcript_evidence=CT833375 (DDBJ%2C Best hit);ORF_evidence=B8AJ30 (UniProt);Oryzabase=19259;TENOR=Os06t0513050-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	18525556	18525556	.	-	.	Parent=Os06t0513050-01
Chr06	irgsp1_rep	CDS	18525433	18525555	.	-	0	Parent=Os06t0513050-01
Chr06	irgsp1_rep	CDS	18525237	18525251	.	-	0	Parent=Os06t0513050-01
Chr06	irgsp1_rep	three_prime_UTR	18525183	18525236	.	-	.	Parent=Os06t0513050-01
Chr06	irgsp1_rep	three_prime_UTR	18524688	18525069	.	-	.	Parent=Os06t0513050-01
Chr06	irgsp1_rep	mRNA	18557966	18558834	.	-	.	ID=Os06t0513781-01;Name=Os06t0513781-01;Locus_id=Os06g0513781;CGSNL Gene Symbol=THI4;CGSNL Gene Name=THIONIN 4;Oryzabase Gene Symbol Synonym(s)=Osthi4%2C thi4;Oryzabase Gene Name Synonym(s)=thionin precursor%2C thionin 4;Note=Conserved hypothetical protein.;Transcript_evidence=CT833375 (DDBJ%2C Secondary hit);ORF_evidence=B8AJ30 (UniProt);Oryzabase=19278;TENOR=Os06t0513781-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	18558834	18558834	.	-	.	Parent=Os06t0513781-01
Chr06	irgsp1_rep	CDS	18558711	18558833	.	-	0	Parent=Os06t0513781-01
Chr06	irgsp1_rep	CDS	18558515	18558529	.	-	0	Parent=Os06t0513781-01
Chr06	irgsp1_rep	three_prime_UTR	18558461	18558514	.	-	.	Parent=Os06t0513781-01
Chr06	irgsp1_rep	three_prime_UTR	18557966	18558347	.	-	.	Parent=Os06t0513781-01
Chr06	irgsp1_rep	mRNA	18578429	18579297	.	-	.	ID=Os06t0513862-01;Name=Os06t0513862-01;Locus_id=Os06g0513862;CGSNL Gene Symbol=THI5;CGSNL Gene Name=THIONIN 5;Oryzabase Gene Symbol Synonym(s)=OsTHI5%2C Osthi5%2C OsTHION5%2C THION5%2C OsTHION4%2C THION4;Oryzabase Gene Name Synonym(s)=Thionin 5;Note=Conserved hypothetical protein.;Transcript_evidence=CT833375 (DDBJ%2C Secondary hit);ORF_evidence=B8AJ30 (UniProt);Oryzabase=19260;TENOR=Os06t0513862-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	18579297	18579297	.	-	.	Parent=Os06t0513862-01
Chr06	irgsp1_rep	CDS	18579174	18579296	.	-	0	Parent=Os06t0513862-01
Chr06	irgsp1_rep	CDS	18578978	18578992	.	-	0	Parent=Os06t0513862-01
Chr06	irgsp1_rep	three_prime_UTR	18578924	18578977	.	-	.	Parent=Os06t0513862-01
Chr06	irgsp1_rep	three_prime_UTR	18578429	18578810	.	-	.	Parent=Os06t0513862-01
Chr06	irgsp1_rep	mRNA	18615724	18616592	.	-	.	ID=Os06t0513943-01;Name=Os06t0513943-01;Locus_id=Os06g0513943;CGSNL Gene Symbol=THI6;CGSNL Gene Name=THIONIN 6;Oryzabase Gene Symbol Synonym(s)=OsTHI6%2C Osthi6%2C thi6%2C OsTHION6%2C THION6;Oryzabase Gene Name Synonym(s)=Thionin 6;Note=Conserved hypothetical protein.;Transcript_evidence=CT833375 (DDBJ%2C Secondary hit);ORF_evidence=B8AJ30 (UniProt);Oryzabase=19261;TENOR=Os06t0513943-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	18616592	18616592	.	-	.	Parent=Os06t0513943-01
Chr06	irgsp1_rep	CDS	18616469	18616591	.	-	0	Parent=Os06t0513943-01
Chr06	irgsp1_rep	CDS	18616273	18616287	.	-	0	Parent=Os06t0513943-01
Chr06	irgsp1_rep	three_prime_UTR	18616219	18616272	.	-	.	Parent=Os06t0513943-01
Chr06	irgsp1_rep	three_prime_UTR	18615724	18616105	.	-	.	Parent=Os06t0513943-01
Chr06	irgsp1_rep	mRNA	18726437	18727508	.	-	.	ID=Os06t0514100-01;Name=Os06t0514100-01;Locus_id=Os06g0514100;RAP-DB Gene Symbol Synonym(s)=OsTHI7;RAP-DB Gene Name Synonym(s)=Thionin 7;CGSNL Gene Symbol=THI7;CGSNL Gene Name=THIONIN 7;Oryzabase Gene Symbol Synonym(s)=OsTHI7%2C OsTHION7%2C THION7;Oryzabase Gene Name Synonym(s)=Thionin 7;Note=Thionin%2C Antimicrobial peptide%2C Defence against root pathogens;Transcript_evidence=AK062831;ORF_evidence=Q0DBX6;GO=Biological Process: defense response (GO:0006952);InterPro=Thionin-like superfamily (IPR036391),Thionin (IPR001010);NIAS_FLcDNA=001-107-G07;Manual Curation=April 14%2C 2020;Literature_PMID=25676661;Oryzabase=19262;TENOR=Os06t0514100-01
Chr06	irgsp1_rep	five_prime_UTR	18727414	18727508	.	-	.	Parent=Os06t0514100-01
Chr06	irgsp1_rep	CDS	18727176	18727413	.	-	0	Parent=Os06t0514100-01
Chr06	irgsp1_rep	CDS	18726926	18726994	.	-	2	Parent=Os06t0514100-01
Chr06	irgsp1_rep	CDS	18726712	18726812	.	-	2	Parent=Os06t0514100-01
Chr06	irgsp1_rep	three_prime_UTR	18726437	18726711	.	-	.	Parent=Os06t0514100-01
Chr06	irgsp1_rep	mRNA	18747278	18750238	.	+	.	ID=Os06t0514700-01;Name=Os06t0514700-01;Locus_id=Os06g0514700;Note=Hypothetical conserved gene.;Transcript_evidence=AK121642 (DDBJ%2C Best hit);ORF_evidence=B8B4E4 (UniProt);NIAS_FLcDNA=J033055N21;Expression=AK121642;TENOR=Os06t0514700-01;KEGG=Os06t0514700-01
Chr06	irgsp1_rep	CDS	18747278	18747443	.	+	0	Parent=Os06t0514700-01
Chr06	irgsp1_rep	CDS	18747525	18747637	.	+	2	Parent=Os06t0514700-01
Chr06	irgsp1_rep	three_prime_UTR	18747638	18749180	.	+	.	Parent=Os06t0514700-01
Chr06	irgsp1_rep	three_prime_UTR	18749271	18749348	.	+	.	Parent=Os06t0514700-01
Chr06	irgsp1_rep	three_prime_UTR	18749892	18750238	.	+	.	Parent=Os06t0514700-01
Chr06	irgsp1_rep	mRNA	18773329	18774239	.	-	.	ID=Os06t0514800-00;Name=Os06t0514800-00;Locus_id=Os06g0514800;CGSNL Gene Symbol=THI1;CGSNL Gene Name=THIONIN 1;Oryzabase Gene Symbol Synonym(s)=OsTHI9%2C THI9%2C Osthi1%2C thi1%2C Osthi8%2C thi8%2C OsTHION9%2C THION9;Oryzabase Gene Name Synonym(s)=Thionin 9%2C thionin 1%2C thionin 8;Note=Conserved hypothetical protein.;Transcript_evidence=CT833375 (DDBJ%2C Secondary hit);ORF_evidence=B8AJ30 (UniProt);Oryzabase=19264;TENOR=Os06t0514800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	18774239	18774239	.	-	.	Parent=Os06t0514800-00
Chr06	irgsp1_rep	CDS	18774116	18774238	.	-	0	Parent=Os06t0514800-00
Chr06	irgsp1_rep	CDS	18773920	18773934	.	-	0	Parent=Os06t0514800-00
Chr06	irgsp1_rep	three_prime_UTR	18773866	18773919	.	-	.	Parent=Os06t0514800-00
Chr06	irgsp1_rep	three_prime_UTR	18773329	18773710	.	-	.	Parent=Os06t0514800-00
Chr06	irgsp1_rep	mRNA	18804911	18805782	.	-	.	ID=Os06t0515400-01;Name=Os06t0515400-01;Locus_id=Os06g0515400;Note=Hypothetical protein.;Transcript_evidence=AK071571 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023102M08;Expression=AK071571;TENOR=Os06t0515400-01;KEGG=Os06t0515400-01
Chr06	irgsp1_rep	five_prime_UTR	18805671	18805782	.	-	.	Parent=Os06t0515400-01
Chr06	irgsp1_rep	five_prime_UTR	18805430	18805586	.	-	.	Parent=Os06t0515400-01
Chr06	irgsp1_rep	CDS	18805196	18805429	.	-	0	Parent=Os06t0515400-01
Chr06	irgsp1_rep	three_prime_UTR	18804911	18805195	.	-	.	Parent=Os06t0515400-01
Chr06	irgsp1_rep	mRNA	18818809	18822444	.	-	.	ID=Os06t0516301-00;Name=Os06t0516301-00;Locus_id=Os06g0516301;Note=Similar to OsRAD23-like.;Transcript_evidence=CT837631 (DDBJ%2C Best hit);ORF_evidence=C8TF44 (UniProt);TENOR=Os06t0516301-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	18822123	18822444	.	-	.	Parent=Os06t0516301-00
Chr06	irgsp1_rep	five_prime_UTR	18818981	18819289	.	-	.	Parent=Os06t0516301-00
Chr06	irgsp1_rep	CDS	18818891	18818980	.	-	0	Parent=Os06t0516301-00
Chr06	irgsp1_rep	three_prime_UTR	18818809	18818890	.	-	.	Parent=Os06t0516301-00
Chr06	irgsp1_rep	mRNA	18885063	18885686	.	+	.	ID=Os06t0516432-00;Name=Os06t0516432-00;Locus_id=Os06g0516432;Note=Similar to OSIGBa0102O13.3 protein.;Transcript_evidence=CT836230 (DDBJ%2C Best hit);ORF_evidence=Q01MV3 (UniProt);TENOR=Os06t0516432-00;KEGG=Os06t0516432-00
Chr06	irgsp1_rep	five_prime_UTR	18885063	18885160	.	+	.	Parent=Os06t0516432-00
Chr06	irgsp1_rep	five_prime_UTR	18885245	18885332	.	+	.	Parent=Os06t0516432-00
Chr06	irgsp1_rep	five_prime_UTR	18885417	18885421	.	+	.	Parent=Os06t0516432-00
Chr06	irgsp1_rep	CDS	18885422	18885616	.	+	0	Parent=Os06t0516432-00
Chr06	irgsp1_rep	three_prime_UTR	18885617	18885686	.	+	.	Parent=Os06t0516432-00
Chr06	irgsp1_rep	mRNA	18913388	18915920	.	-	.	ID=Os06t0516800-01;Name=Os06t0516800-01;Locus_id=Os06g0516800;Note=Hypothetical gene.;Transcript_evidence=AK109918 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-150-E01;Expression=AK109918;TENOR=Os06t0516800-01;KEGG=Os06t0516800-01
Chr06	irgsp1_rep	five_prime_UTR	18915919	18915920	.	-	.	Parent=Os06t0516800-01
Chr06	irgsp1_rep	CDS	18915595	18915918	.	-	0	Parent=Os06t0516800-01
Chr06	irgsp1_rep	three_prime_UTR	18915300	18915594	.	-	.	Parent=Os06t0516800-01
Chr06	irgsp1_rep	three_prime_UTR	18914322	18914486	.	-	.	Parent=Os06t0516800-01
Chr06	irgsp1_rep	three_prime_UTR	18913868	18914164	.	-	.	Parent=Os06t0516800-01
Chr06	irgsp1_rep	three_prime_UTR	18913388	18913769	.	-	.	Parent=Os06t0516800-01
Chr06	irgsp1_rep	mRNA	18935016	18954254	.	-	.	ID=Os06t0517500-00;Name=Os06t0517500-00;Locus_id=Os06g0517500;Note=Hypothetical conserved gene.;Transcript_evidence=CT837724 (DDBJ%2C Best hit);ORF_evidence=Q5Z5V2 (UniProt);TENOR=Os06t0517500-00;KEGG=Os06t0517500-00
Chr06	irgsp1_rep	five_prime_UTR	18954253	18954254	.	-	.	Parent=Os06t0517500-00
Chr06	irgsp1_rep	CDS	18953968	18954252	.	-	0	Parent=Os06t0517500-00
Chr06	irgsp1_rep	three_prime_UTR	18953853	18953967	.	-	.	Parent=Os06t0517500-00
Chr06	irgsp1_rep	three_prime_UTR	18953464	18953535	.	-	.	Parent=Os06t0517500-00
Chr06	irgsp1_rep	three_prime_UTR	18952970	18953051	.	-	.	Parent=Os06t0517500-00
Chr06	irgsp1_rep	three_prime_UTR	18946324	18946363	.	-	.	Parent=Os06t0517500-00
Chr06	irgsp1_rep	three_prime_UTR	18945872	18946210	.	-	.	Parent=Os06t0517500-00
Chr06	irgsp1_rep	three_prime_UTR	18935016	18935227	.	-	.	Parent=Os06t0517500-00
Chr06	irgsp1_rep	mRNA	18955486	18956519	.	-	.	ID=Os06t0517700-01;Name=Os06t0517700-01;Locus_id=Os06g0517700;RAP-DB Gene Symbol Synonym(s)=OsTHION15;RAP-DB Gene Name Synonym(s)=thionin 15;CGSNL Gene Symbol=THI12;CGSNL Gene Name=THIONIN 12;Oryzabase Gene Symbol Synonym(s)=Osthi12%2C thi12%2C OsTHION15%2C THION15;Oryzabase Gene Name Synonym(s)=thionin 12;Note=Thionin%2C Antimicrobial peptide;Transcript_evidence=AK242926;ORF_evidence=B7F9T5;GO=Biological Process: defense response (GO:0006952);InterPro=Thionin-like superfamily (IPR036391),Thionin (IPR001010);NIAS_FLcDNA=J090085H12;Manual Curation=March 11%2C 2020;Literature_PMID=30028233;Oryzabase=19288;TENOR=Os06t0517700-01
Chr06	irgsp1_rep	five_prime_UTR	18956432	18956519	.	-	.	Parent=Os06t0517700-01
Chr06	irgsp1_rep	CDS	18956194	18956431	.	-	0	Parent=Os06t0517700-01
Chr06	irgsp1_rep	CDS	18955978	18956046	.	-	2	Parent=Os06t0517700-01
Chr06	irgsp1_rep	CDS	18955770	18955870	.	-	2	Parent=Os06t0517700-01
Chr06	irgsp1_rep	three_prime_UTR	18955486	18955769	.	-	.	Parent=Os06t0517700-01
Chr06	irgsp1_rep	mRNA	18978792	18982027	.	+	.	ID=Os06t0518100-01;Name=Os06t0518100-01;Locus_id=Os06g0518100;Note=Conserved hypothetical protein.;Transcript_evidence=AK119810 (DDBJ%2C Best hit);ORF_evidence=Q6ZCX4 (UniProt);NIAS_FLcDNA=002-176-H04;TENOR=Os06t0518100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	18978792	18978792	.	+	.	Parent=Os06t0518100-01
Chr06	irgsp1_rep	CDS	18978793	18978951	.	+	0	Parent=Os06t0518100-01
Chr06	irgsp1_rep	three_prime_UTR	18978952	18982027	.	+	.	Parent=Os06t0518100-01
Chr06	irgsp1_rep	mRNA	18984192	18984874	.	+	.	ID=Os06t0518300-01;Name=Os06t0518300-01;Locus_id=Os06g0518300;Note=Hypothetical conserved gene.;Transcript_evidence=AK109313 (DDBJ%2C Best hit);ORF_evidence=B8B343 (UniProt);NIAS_FLcDNA=002-188-F12;Expression=AK109313;TENOR=Os06t0518300-01;KEGG=Os06t0518300-01
Chr06	irgsp1_rep	five_prime_UTR	18984192	18984207	.	+	.	Parent=Os06t0518300-01
Chr06	irgsp1_rep	CDS	18984208	18984588	.	+	0	Parent=Os06t0518300-01
Chr06	irgsp1_rep	three_prime_UTR	18984589	18984874	.	+	.	Parent=Os06t0518300-01
Chr06	irgsp1_rep	mRNA	19020391	19025456	.	+	.	ID=Os06t0519400-01;Name=Os06t0519400-01;Locus_id=Os06g0519400;CGSNL Gene Symbol=C3H42;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 42;Oryzabase Gene Symbol Synonym(s)=OsC3H42;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 42;Note=Zinc finger%2C CCCH-type domain containing protein.;Transcript_evidence=AK119453 (DDBJ%2C Best hit);ORF_evidence=Q0DBW8 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=001-133-D12;Oryzabase=8608;Expression=AK119453;TENOR=Os06t0519400-01;KEGG=Os06t0519400-01
Chr06	irgsp1_rep	five_prime_UTR	19020391	19020466	.	+	.	Parent=Os06t0519400-01
Chr06	irgsp1_rep	CDS	19020467	19020931	.	+	0	Parent=Os06t0519400-01
Chr06	irgsp1_rep	CDS	19021889	19021984	.	+	0	Parent=Os06t0519400-01
Chr06	irgsp1_rep	CDS	19022182	19022460	.	+	0	Parent=Os06t0519400-01
Chr06	irgsp1_rep	three_prime_UTR	19022461	19025456	.	+	.	Parent=Os06t0519400-01
Chr06	irgsp1_rep	mRNA	19039409	19039870	.	+	.	ID=Os06t0519700-00;Name=Os06t0519700-00;Locus_id=Os06g0519700;CGSNL Gene Symbol=SCP35;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 35;Oryzabase Gene Symbol Synonym(s)=OsSCP35;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 35;Note=Similar to Serine carboxypeptidase family protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10DG1 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563);Oryzabase=19215;TENOR=Os06t0519700-00
Chr06	irgsp1_rep	CDS	19039409	19039602	.	+	0	Parent=Os06t0519700-00
Chr06	irgsp1_rep	CDS	19039720	19039870	.	+	1	Parent=Os06t0519700-00
Chr06	irgsp1_rep	mRNA	19063808	19065989	.	-	.	ID=Os06t0520300-00;Name=Os06t0520300-00;Locus_id=Os06g0520300;Note=Non-protein coding transcript.;Transcript_evidence=tplb0035f04 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os06t0520300-00
Chr06	irgsp1_rep	exon	19065156	19065989	.	-	.	Parent=Os06t0520300-00
Chr06	irgsp1_rep	exon	19063808	19064348	.	-	.	Parent=Os06t0520300-00
Chr06	irgsp1_rep	mRNA	19101558	19107176	.	+	.	ID=Os06t0520600-01;Name=Os06t0520600-01;Locus_id=Os06g0520600;CGSNL Gene Symbol=C3H43;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 43;Oryzabase Gene Symbol Synonym(s)=OsC3H43;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 43;Note=Similar to Zinc finger CCCH type domain containing protein ZFN-like 1.;Transcript_evidence=AK101510 (DDBJ%2C Best hit);ORF_evidence=Q84PB3 (UniProt);GO=Biological Process: RNA metabolic process (GO:0016070),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571),MIF4G-like%2C type 3 (IPR003890),MIF4-like%2C type 1/2/3 (IPR016021),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033045L14;Oryzabase=8609;Expression=AK101510;TENOR=Os06t0520600-01;KEGG=Os06t0520600-01
Chr06	irgsp1_rep	five_prime_UTR	19101558	19101720	.	+	.	Parent=Os06t0520600-01
Chr06	irgsp1_rep	CDS	19101721	19102098	.	+	0	Parent=Os06t0520600-01
Chr06	irgsp1_rep	CDS	19102693	19102788	.	+	0	Parent=Os06t0520600-01
Chr06	irgsp1_rep	CDS	19102987	19103196	.	+	0	Parent=Os06t0520600-01
Chr06	irgsp1_rep	CDS	19103848	19103913	.	+	0	Parent=Os06t0520600-01
Chr06	irgsp1_rep	CDS	19104199	19104300	.	+	0	Parent=Os06t0520600-01
Chr06	irgsp1_rep	CDS	19104436	19104630	.	+	0	Parent=Os06t0520600-01
Chr06	irgsp1_rep	CDS	19104716	19104834	.	+	0	Parent=Os06t0520600-01
Chr06	irgsp1_rep	CDS	19104967	19105054	.	+	1	Parent=Os06t0520600-01
Chr06	irgsp1_rep	CDS	19105151	19105501	.	+	0	Parent=Os06t0520600-01
Chr06	irgsp1_rep	CDS	19106413	19106943	.	+	0	Parent=Os06t0520600-01
Chr06	irgsp1_rep	three_prime_UTR	19106944	19107176	.	+	.	Parent=Os06t0520600-01
Chr06	irgsp1_rep	mRNA	19157238	19158412	.	-	.	ID=Os06t0520733-00;Name=Os06t0520733-00;Locus_id=Os06g0520733;Note=Similar to cell number regulator 4.;Transcript_evidence=AK370184 (DDBJ);ORF_evidence=NP_001182141.1 (RefSeq);InterPro=Uncharacterised protein family Cys-rich (IPR006461);TENOR=Os06t0520733-00
Chr06	irgsp1_rep	five_prime_UTR	19158380	19158412	.	-	.	Parent=Os06t0520733-00
Chr06	irgsp1_rep	CDS	19158340	19158379	.	-	0	Parent=Os06t0520733-00
Chr06	irgsp1_rep	CDS	19158124	19158195	.	-	2	Parent=Os06t0520733-00
Chr06	irgsp1_rep	CDS	19157238	19157467	.	-	2	Parent=Os06t0520733-00
Chr06	irgsp1_rep	mRNA	19186999	19192365	.	-	.	ID=Os06t0521000-01;Name=Os06t0521000-01;Locus_id=Os06g0521000;CGSNL Gene Symbol=MSL26;CGSNL Gene Name=MYB/SANT-LIKE 26;Oryzabase Gene Symbol Synonym(s)=OsMSL26;Oryzabase Gene Name Synonym(s)=Myb/SANT-LIKE 26;Note=Homeodomain-like containing protein.;Transcript_evidence=AK119927 (DDBJ%2C Best hit);ORF_evidence=B9FTJ0 (UniProt);NIAS_FLcDNA=002-184-A01;Oryzabase=22962;Expression=AK119927;TENOR=Os06t0521000-01;KEGG=Os06t0521000-01
Chr06	irgsp1_rep	five_prime_UTR	19192162	19192365	.	-	.	Parent=Os06t0521000-01
Chr06	irgsp1_rep	CDS	19191911	19192161	.	-	0	Parent=Os06t0521000-01
Chr06	irgsp1_rep	CDS	19190332	19190569	.	-	1	Parent=Os06t0521000-01
Chr06	irgsp1_rep	CDS	19189849	19190235	.	-	0	Parent=Os06t0521000-01
Chr06	irgsp1_rep	three_prime_UTR	19189440	19189848	.	-	.	Parent=Os06t0521000-01
Chr06	irgsp1_rep	three_prime_UTR	19187425	19187481	.	-	.	Parent=Os06t0521000-01
Chr06	irgsp1_rep	three_prime_UTR	19186999	19187237	.	-	.	Parent=Os06t0521000-01
Chr06	irgsp1_rep	mRNA	19194458	19195583	.	+	.	ID=Os06t0521200-00;Name=Os06t0521200-00;Locus_id=Os06g0521200;Oryzabase Gene Symbol Synonym(s)=prx85;Oryzabase Gene Name Synonym(s)=class III peroxidase 85;Note=Similar to peroxidase 52.;Transcript_evidence=FP095714 (DDBJ);ORF_evidence=NP_001147254.1 (RefSeq);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);Oryzabase=14608;TENOR=Os06t0521200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	19194458	19194670	.	+	0	Parent=Os06t0521200-00
Chr06	irgsp1_rep	CDS	19194754	19195177	.	+	0	Parent=Os06t0521200-00
Chr06	irgsp1_rep	CDS	19195231	19195583	.	+	2	Parent=Os06t0521200-00
Chr06	irgsp1_rep	mRNA	19195774	19196540	.	-	.	ID=Os06t0521300-00;Name=Os06t0521300-00;Locus_id=Os06g0521300;Note=Similar to Harpin-induced protein 1 containing protein%2C expressed.;Transcript_evidence=AK358816 (DDBJ);ORF_evidence=Q2RB97 (UniProt);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);TENOR=Os06t0521300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	19196491	19196540	.	-	.	Parent=Os06t0521300-00
Chr06	irgsp1_rep	CDS	19195774	19196490	.	-	0	Parent=Os06t0521300-00
Chr06	irgsp1_rep	mRNA	19199629	19200715	.	-	.	ID=Os06t0521400-00;Name=Os06t0521400-00;Locus_id=Os06g0521400;Oryzabase Gene Symbol Synonym(s)=prx84;Oryzabase Gene Name Synonym(s)=class III peroxidase 84;Note=Haem peroxidase family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001057745.1 (RefSeq);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidase%2C active site (IPR019794);Oryzabase=14607;TENOR=Os06t0521400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	19200479	19200715	.	-	0	Parent=Os06t0521400-00
Chr06	irgsp1_rep	CDS	19199629	19200381	.	-	0	Parent=Os06t0521400-00
Chr06	irgsp1_rep	mRNA	19205630	19207119	.	-	.	ID=Os06t0521500-01;Name=Os06t0521500-01;Locus_id=Os06g0521500;Oryzabase Gene Symbol Synonym(s)=prx83;Oryzabase Gene Name Synonym(s)=class III peroxidase 83;Note=Haem peroxidase family protein.;Transcript_evidence=AK061144 (DDBJ%2C Best hit);ORF_evidence=A2YDJ4 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=006-208-C10;Oryzabase=14606;Expression=AK061144;TENOR=Os06t0521500-01;KEGG=Os06t0521500-01
Chr06	irgsp1_rep	five_prime_UTR	19206966	19207119	.	-	.	Parent=Os06t0521500-01
Chr06	irgsp1_rep	CDS	19206729	19206965	.	-	0	Parent=Os06t0521500-01
Chr06	irgsp1_rep	CDS	19205790	19206557	.	-	0	Parent=Os06t0521500-01
Chr06	irgsp1_rep	three_prime_UTR	19205630	19205789	.	-	.	Parent=Os06t0521500-01
Chr06	irgsp1_rep	mRNA	19205574	19207089	.	-	.	ID=Os06t0521500-02;Name=Os06t0521500-02;Locus_id=Os06g0521500;Oryzabase Gene Symbol Synonym(s)=prx83;Oryzabase Gene Name Synonym(s)=class III peroxidase 83;Note=Haem peroxidase family protein.;Transcript_evidence=AK072761 (DDBJ%2C Best hit);ORF_evidence=A2YDJ4 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J023143E11;Oryzabase=14606;Expression=AK072761;TENOR=Os06t0521500-02;KEGG=Os06t0521500-02
Chr06	irgsp1_rep	five_prime_UTR	19206966	19207089	.	-	.	Parent=Os06t0521500-02
Chr06	irgsp1_rep	CDS	19206729	19206965	.	-	0	Parent=Os06t0521500-02
Chr06	irgsp1_rep	CDS	19205790	19206557	.	-	0	Parent=Os06t0521500-02
Chr06	irgsp1_rep	three_prime_UTR	19205574	19205789	.	-	.	Parent=Os06t0521500-02
Chr06	irgsp1_rep	mRNA	19258267	19259376	.	-	.	ID=Os06t0521900-00;Name=Os06t0521900-00;Locus_id=Os06g0521900;Oryzabase Gene Symbol Synonym(s)=prx82;Oryzabase Gene Name Synonym(s)=class III peroxidase 82;Note=Plant peroxidase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001057748.1 (RefSeq);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidase%2C active site (IPR019794);Oryzabase=14605;TENOR=Os06t0521900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	19259131	19259376	.	-	0	Parent=Os06t0521900-00
Chr06	irgsp1_rep	CDS	19258267	19258611	.	-	0	Parent=Os06t0521900-00
Chr06	irgsp1_rep	mRNA	19265652	19266050	.	-	.	ID=Os06t0522100-00;Name=Os06t0522100-00;Locus_id=Os06g0522100;Note=Plant peroxidase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3BC89 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255);TENOR=Os06t0522100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	19265652	19266050	.	-	0	Parent=Os06t0522100-00
Chr06	irgsp1_rep	mRNA	19271256	19272675	.	-	.	ID=Os06t0522300-01;Name=Os06t0522300-01;Locus_id=Os06g0522300;Oryzabase Gene Symbol Synonym(s)=prx81;Oryzabase Gene Name Synonym(s)=class III peroxidase 81;Note=Haem peroxidase family protein.;Transcript_evidence=AK066954 (DDBJ%2C Best hit);ORF_evidence=NP_001147254.1 (RefSeq);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J013094H12;Oryzabase=14604;Expression=AK066954;TENOR=Os06t0522300-01;KEGG=Os06t0522300-01 (EC:1.11.1.7)
Chr06	irgsp1_rep	five_prime_UTR	19272525	19272675	.	-	.	Parent=Os06t0522300-01
Chr06	irgsp1_rep	CDS	19272279	19272524	.	-	0	Parent=Os06t0522300-01
Chr06	irgsp1_rep	CDS	19271417	19272187	.	-	0	Parent=Os06t0522300-01
Chr06	irgsp1_rep	three_prime_UTR	19271256	19271416	.	-	.	Parent=Os06t0522300-01
Chr06	irgsp1_rep	mRNA	19318794	19320654	.	+	.	ID=Os06t0523100-01;Name=Os06t0523100-01;Locus_id=Os06g0523100;CGSNL Gene Symbol=IIP6;CGSNL Gene Name=ILA1 INTERACTING PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=IIP6;Oryzabase Gene Name Synonym(s)=ILA1 interacting protein 6;Note=Similar to loricrin-related.;Transcript_evidence=AK062190 (DDBJ%2C Best hit);ORF_evidence=NP_201260.1 (RefSeq);NIAS_FLcDNA=001-046-E09;Oryzabase=10227;TENOR=Os06t0523100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	19318794	19320284	.	+	0	Parent=Os06t0523100-01
Chr06	irgsp1_rep	three_prime_UTR	19320285	19320654	.	+	.	Parent=Os06t0523100-01
Chr06	irgsp1_rep	mRNA	19318929	19320596	.	+	.	ID=Os06t0523100-02;Name=Os06t0523100-02;Locus_id=Os06g0523100;CGSNL Gene Symbol=IIP6;CGSNL Gene Name=ILA1 INTERACTING PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=IIP6;Oryzabase Gene Name Synonym(s)=ILA1 interacting protein 6;Note=Similar to predicted protein.;Transcript_evidence=AK119245 (DDBJ%2C Best hit),AK105107 (DDBJ%2C Best hit);ORF_evidence=A3BC92 (UniProt);NIAS_FLcDNA=001-121-C03,001-100-F03;Oryzabase=10227;Expression=AK119245;TENOR=Os06t0523100-02;KEGG=Os06t0523100-02
Chr06	irgsp1_rep	CDS	19318929	19320284	.	+	0	Parent=Os06t0523100-02
Chr06	irgsp1_rep	three_prime_UTR	19320285	19320596	.	+	.	Parent=Os06t0523100-02
Chr06	irgsp1_rep	mRNA	19333952	19334517	.	-	.	ID=Os06t0523300-01;Name=Os06t0523300-01;Locus_id=Os06g0523300;Note=Conserved hypothetical protein.;Transcript_evidence=AK105345 (DDBJ%2C Best hit);ORF_evidence=Q654E0 (UniProt);NIAS_FLcDNA=001-118-H09;Expression=AK105345;TENOR=Os06t0523300-01;KEGG=Os06t0523300-01
Chr06	irgsp1_rep	five_prime_UTR	19334453	19334517	.	-	.	Parent=Os06t0523300-01
Chr06	irgsp1_rep	CDS	19334156	19334452	.	-	0	Parent=Os06t0523300-01
Chr06	irgsp1_rep	three_prime_UTR	19333952	19334155	.	-	.	Parent=Os06t0523300-01
Chr06	irgsp1_rep	mRNA	19338633	19344721	.	-	.	ID=Os06t0523400-01;Name=Os06t0523400-01;Locus_id=Os06g0523400;Note=Nucleotide-sugar transporter family protein.;Transcript_evidence=AK121890 (DDBJ%2C Best hit);ORF_evidence=XP_002870621.1 (RefSeq);GO=Biological Process: carbohydrate transport (GO:0008643),Biological Process: nucleotide-sugar transport (GO:0015780),Cellular Component: Golgi membrane (GO:0000139),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide-sugar transmembrane transporter activity (GO:0005338),Molecular Function: sugar:hydrogen symporter activity (GO:0005351);InterPro=UDP-galactose transporter (IPR004689),Nucleotide-sugar transporter (IPR007271),UDP/CMP-sugar transporter (IPR021189);NIAS_FLcDNA=J033105B22;Expression=AK121890;TENOR=Os06t0523400-01;KEGG=Os06t0523400-01
Chr06	irgsp1_rep	five_prime_UTR	19344332	19344721	.	-	.	Parent=Os06t0523400-01
Chr06	irgsp1_rep	CDS	19344280	19344331	.	-	0	Parent=Os06t0523400-01
Chr06	irgsp1_rep	CDS	19343166	19343248	.	-	2	Parent=Os06t0523400-01
Chr06	irgsp1_rep	CDS	19342826	19343040	.	-	0	Parent=Os06t0523400-01
Chr06	irgsp1_rep	CDS	19342048	19342126	.	-	1	Parent=Os06t0523400-01
Chr06	irgsp1_rep	CDS	19340916	19341085	.	-	0	Parent=Os06t0523400-01
Chr06	irgsp1_rep	CDS	19340544	19340730	.	-	1	Parent=Os06t0523400-01
Chr06	irgsp1_rep	CDS	19339268	19339345	.	-	0	Parent=Os06t0523400-01
Chr06	irgsp1_rep	CDS	19339023	19339127	.	-	0	Parent=Os06t0523400-01
Chr06	irgsp1_rep	three_prime_UTR	19338633	19339022	.	-	.	Parent=Os06t0523400-01
Chr06	irgsp1_rep	mRNA	19346737	19347488	.	-	.	ID=Os06t0523701-00;Name=Os06t0523701-00;Locus_id=Os06g0523701;Note=Hypothetical conserved gene.;Transcript_evidence=EU975848 (DDBJ);ORF_evidence=Q2R3A7 (UniProt);GO=Biological Process: transposition%2C DNA-mediated (GO:0006313),Biological Process: DNA integration (GO:0015074),Molecular Function: DNA binding (GO:0003677),Molecular Function: transposase activity (GO:0004803);InterPro=Transposase%2C Tc1-like (IPR002492);TENOR=Os06t0523701-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	19347394	19347488	.	-	.	Parent=Os06t0523701-00
Chr06	irgsp1_rep	CDS	19346737	19347393	.	-	0	Parent=Os06t0523701-00
Chr06	irgsp1_rep	mRNA	19357232	19360499	.	+	.	ID=Os06t0523900-00;Name=Os06t0523900-00;Locus_id=Os06g0523900;Note=RNA-processing protein%2C HAT helix domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001174825.1 (RefSeq);GO=Biological Process: RNA processing (GO:0006396),Cellular Component: intracellular (GO:0005622),Molecular Function: binding (GO:0005488);InterPro=RNA-processing protein%2C HAT helix (IPR003107),Tetratricopeptide-like helical (IPR011990);TENOR=Os06t0523900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	19357232	19357708	.	+	0	Parent=Os06t0523900-00
Chr06	irgsp1_rep	CDS	19357756	19358868	.	+	0	Parent=Os06t0523900-00
Chr06	irgsp1_rep	CDS	19359630	19359719	.	+	0	Parent=Os06t0523900-00
Chr06	irgsp1_rep	CDS	19359748	19359847	.	+	0	Parent=Os06t0523900-00
Chr06	irgsp1_rep	CDS	19359955	19360153	.	+	2	Parent=Os06t0523900-00
Chr06	irgsp1_rep	CDS	19360379	19360499	.	+	1	Parent=Os06t0523900-00
Chr06	irgsp1_rep	mRNA	19401016	19406760	.	+	.	ID=Os06t0524300-01;Name=Os06t0524300-01;Locus_id=Os06g0524300;Note=Protein of unknown function DUF3133 domain containing protein.;Transcript_evidence=AK100666 (DDBJ%2C Best hit);ORF_evidence=B8B352 (UniProt);InterPro=Protein of unknown function DUF3133 (IPR021480);NIAS_FLcDNA=J023112F17;Expression=AK100666;TENOR=Os06t0524300-01;KEGG=Os06t0524300-01
Chr06	irgsp1_rep	five_prime_UTR	19401016	19401274	.	+	.	Parent=Os06t0524300-01
Chr06	irgsp1_rep	CDS	19401275	19401407	.	+	0	Parent=Os06t0524300-01
Chr06	irgsp1_rep	CDS	19402485	19404447	.	+	2	Parent=Os06t0524300-01
Chr06	irgsp1_rep	CDS	19404647	19404707	.	+	1	Parent=Os06t0524300-01
Chr06	irgsp1_rep	CDS	19404795	19405018	.	+	0	Parent=Os06t0524300-01
Chr06	irgsp1_rep	CDS	19406273	19406327	.	+	1	Parent=Os06t0524300-01
Chr06	irgsp1_rep	three_prime_UTR	19406328	19406760	.	+	.	Parent=Os06t0524300-01
Chr06	irgsp1_rep	mRNA	19415281	19418327	.	+	.	ID=Os06t0524400-01;Name=Os06t0524400-01;Locus_id=Os06g0524400;Oryzabase Gene Symbol Synonym(s)=OsTBL49%2C TBL49;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 49;Note=Protein of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=AK107013 (DDBJ%2C Best hit);ORF_evidence=O04621 (UniProt);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=002-120-F10;Oryzabase=21504;Expression=AK107013;TENOR=Os06t0524400-01;KEGG=Os06t0524400-01
Chr06	irgsp1_rep	five_prime_UTR	19415281	19415385	.	+	.	Parent=Os06t0524400-01
Chr06	irgsp1_rep	CDS	19415386	19415611	.	+	0	Parent=Os06t0524400-01
Chr06	irgsp1_rep	CDS	19416481	19416758	.	+	2	Parent=Os06t0524400-01
Chr06	irgsp1_rep	CDS	19417254	19418030	.	+	0	Parent=Os06t0524400-01
Chr06	irgsp1_rep	three_prime_UTR	19418031	19418327	.	+	.	Parent=Os06t0524400-01
Chr06	irgsp1_rep	mRNA	19418829	19421854	.	-	.	ID=Os06t0524500-01;Name=Os06t0524500-01;Locus_id=Os06g0524500;Note=Conserved hypothetical protein.;Transcript_evidence=AK066466 (DDBJ%2C Best hit);ORF_evidence=B8B353 (UniProt);NIAS_FLcDNA=J013065I19;Expression=AK066466;TENOR=Os06t0524500-01;KEGG=Os06t0524500-01
Chr06	irgsp1_rep	five_prime_UTR	19421690	19421854	.	-	.	Parent=Os06t0524500-01
Chr06	irgsp1_rep	CDS	19421345	19421689	.	-	0	Parent=Os06t0524500-01
Chr06	irgsp1_rep	three_prime_UTR	19418829	19421344	.	-	.	Parent=Os06t0524500-01
Chr06	irgsp1_rep	mRNA	19427543	19428921	.	-	.	ID=Os06t0524700-01;Name=Os06t0524700-01;Locus_id=Os06g0524700;Note=Protein of unknown function DUF247%2C plant family protein.;Transcript_evidence=AK109761 (DDBJ%2C Best hit);ORF_evidence=A3BCA1 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);NIAS_FLcDNA=002-146-G09;Expression=AK109761;TENOR=Os06t0524700-01;KEGG=Os06t0524700-01
Chr06	irgsp1_rep	CDS	19427602	19428921	.	-	0	Parent=Os06t0524700-01
Chr06	irgsp1_rep	three_prime_UTR	19427543	19427601	.	-	.	Parent=Os06t0524700-01
Chr06	irgsp1_rep	mRNA	19434822	19439087	.	+	.	ID=Os06t0524900-01;Name=Os06t0524900-01;Locus_id=Os06g0524900;Note=NB-ARC domain containing protein.;Transcript_evidence=AK101846 (DDBJ%2C Best hit),AK121910 (DDBJ%2C Best hit);ORF_evidence=A3BCA2 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J033069I17,J033105O17;TENOR=Os06t0524900-01
Chr06	irgsp1_rep	five_prime_UTR	19434822	19434894	.	+	.	Parent=Os06t0524900-01
Chr06	irgsp1_rep	CDS	19434895	19435730	.	+	0	Parent=Os06t0524900-01
Chr06	irgsp1_rep	CDS	19436937	19437507	.	+	1	Parent=Os06t0524900-01
Chr06	irgsp1_rep	three_prime_UTR	19437508	19439087	.	+	.	Parent=Os06t0524900-01
Chr06	irgsp1_rep	mRNA	19439058	19441380	.	-	.	ID=Os06t0525000-01;Name=Os06t0525000-01;Locus_id=Os06g0525000;Note=Conserved hypothetical protein.;Transcript_evidence=AK119757 (DDBJ%2C Best hit);ORF_evidence=NP_001057759.1 (RefSeq);NIAS_FLcDNA=002-171-D05;Expression=AK119757;TENOR=Os06t0525000-01;KEGG=Os06t0525000-01
Chr06	irgsp1_rep	CDS	19440898	19441380	.	-	0	Parent=Os06t0525000-01
Chr06	irgsp1_rep	CDS	19439332	19439424	.	-	0	Parent=Os06t0525000-01
Chr06	irgsp1_rep	three_prime_UTR	19439058	19439331	.	-	.	Parent=Os06t0525000-01
Chr06	irgsp1_rep	mRNA	19445475	19446523	.	-	.	ID=Os06t0525200-00;Name=Os06t0525200-00;Locus_id=Os06g0525200;Note=Similar to avr9/Cf-9 rapidly elicited protein 194.;Transcript_evidence=CT836328 (DDBJ%2C Best hit);ORF_evidence=NP_001148396.1 (RefSeq);TENOR=Os06t0525200-00;KEGG=Os06t0525200-00
Chr06	irgsp1_rep	five_prime_UTR	19446284	19446523	.	-	.	Parent=Os06t0525200-00
Chr06	irgsp1_rep	CDS	19445690	19446283	.	-	0	Parent=Os06t0525200-00
Chr06	irgsp1_rep	three_prime_UTR	19445475	19445689	.	-	.	Parent=Os06t0525200-00
Chr06	irgsp1_rep	mRNA	19490529	19494500	.	+	.	ID=Os06t0526100-01;Name=Os06t0526100-01;Locus_id=Os06g0526100;Oryzabase Gene Symbol Synonym(s)=OsbHLH054%2C bHLH054%2C bHLH54%2C OsSPCH1%2C SPCH;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 054%2C SPEECHLESS 1;Note=Hypothetical conserved gene.;Transcript_evidence=AK287482 (DDBJ%2C Best hit);ORF_evidence=NP_001174827.1 (RefSeq);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J043025B18;Oryzabase=15345;TENOR=Os06t0526100-01;KEGG=Os06t0526100-01
Chr06	irgsp1_rep	five_prime_UTR	19490529	19490660	.	+	.	Parent=Os06t0526100-01
Chr06	irgsp1_rep	CDS	19490661	19491164	.	+	0	Parent=Os06t0526100-01
Chr06	irgsp1_rep	CDS	19492014	19492697	.	+	0	Parent=Os06t0526100-01
Chr06	irgsp1_rep	three_prime_UTR	19492698	19494500	.	+	.	Parent=Os06t0526100-01
Chr06	irgsp1_rep	mRNA	19490529	19494500	.	+	.	ID=Os06t0526100-02;Name=Os06t0526100-02;Locus_id=Os06g0526100;RAP-DB Gene Symbol Synonym(s)=OsSPCH1;RAP-DB Gene Name Synonym(s)=SPEECHLESS 1;Oryzabase Gene Symbol Synonym(s)=OsbHLH054%2C bHLH054%2C bHLH54%2C OsSPCH1%2C SPCH;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 054%2C SPEECHLESS 1;Note=Basic helix-loop-helix (bHLH) transcription factor%2C Initiation of stomatal development%2C Control of stomatal initiation and meristemoid fate;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Helix-loop-helix DNA-binding domain superfamily (IPR036638),Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);Manual Curation=March 5%2C 2020;Literature_PMID=30825332;Oryzabase=15345
Chr06	irgsp1_rep	five_prime_UTR	19490529	19490660	.	+	.	Parent=Os06t0526100-02
Chr06	irgsp1_rep	CDS	19490661	19491164	.	+	0	Parent=Os06t0526100-02
Chr06	irgsp1_rep	CDS	19492014	19492634	.	+	0	Parent=Os06t0526100-02
Chr06	irgsp1_rep	CDS	19494143	19494208	.	+	0	Parent=Os06t0526100-02
Chr06	irgsp1_rep	three_prime_UTR	19494209	19494500	.	+	.	Parent=Os06t0526100-02
Chr06	irgsp1_rep	mRNA	19497378	19498542	.	-	.	ID=Os06t0526350-01;Name=Os06t0526350-01;Locus_id=Os06g0526350;Note=Hypothetical conserved gene.;Transcript_evidence=AK242159 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J075155N20;TENOR=Os06t0526350-01;KEGG=Os06t0526350-01
Chr06	irgsp1_rep	five_prime_UTR	19498268	19498542	.	-	.	Parent=Os06t0526350-01
Chr06	irgsp1_rep	CDS	19498106	19498267	.	-	0	Parent=Os06t0526350-01
Chr06	irgsp1_rep	CDS	19497869	19497964	.	-	0	Parent=Os06t0526350-01
Chr06	irgsp1_rep	three_prime_UTR	19497378	19497868	.	-	.	Parent=Os06t0526350-01
Chr06	irgsp1_rep	mRNA	19503056	19506416	.	-	.	ID=Os06t0526400-00;Name=Os06t0526400-00;Locus_id=Os06g0526400;CGSNL Gene Symbol=PYL/RCAR7;CGSNL Gene Name=PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 7;Oryzabase Gene Symbol Synonym(s)=OsPYL/RCAR7%2C OsPYL7%2C PYL7%2C OsPYL12;Oryzabase Gene Name Synonym(s)=pyrabactin resistance-like 12%2C PYR1-like 7%2C pyrabactin resistance 1-like 7;Note=Similar to AT-rich element binding factor 3.;Transcript_evidence=ab initio prediction;ORF_evidence=A2X334 (UniProt);InterPro=Polyketide cyclase/dehydrase (IPR019587),START-like domain (IPR023393);Oryzabase=18097;TENOR=Os06t0526400-00;KEGG=Os06t0526400-00
Chr06	irgsp1_rep	CDS	19506207	19506416	.	-	0	Parent=Os06t0526400-00
Chr06	irgsp1_rep	CDS	19503651	19503866	.	-	0	Parent=Os06t0526400-00
Chr06	irgsp1_rep	CDS	19503056	19503220	.	-	0	Parent=Os06t0526400-00
Chr06	irgsp1_rep	mRNA	19508718	19511234	.	-	.	ID=Os06t0526466-00;Name=Os06t0526466-00;Locus_id=Os06g0526466;CGSNL Gene Symbol=PYL/RCAR13;CGSNL Gene Name=PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 13;Oryzabase Gene Symbol Synonym(s)=OsEnS-89%2C OsPYL/RCAR13%2C OsPYL13%2C PYL13;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 89%2C pyrabactin resistance-like 13%2C PYR1-like 13%2C pyrabactin resistance 1-like 13;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001174829.1 (RefSeq);Oryzabase=18400;TENOR=Os06t0526466-00
Chr06	irgsp1_rep	CDS	19511026	19511234	.	-	0	Parent=Os06t0526466-00
Chr06	irgsp1_rep	CDS	19510572	19510611	.	-	1	Parent=Os06t0526466-00
Chr06	irgsp1_rep	CDS	19508718	19508885	.	-	0	Parent=Os06t0526466-00
Chr06	irgsp1_rep	mRNA	19516630	19524702	.	-	.	ID=Os06t0526600-01;Name=Os06t0526600-01;Locus_id=Os06g0526600;RAP-DB Gene Symbol Synonym(s)=OsABP;RAP-DB Gene Name Synonym(s)=DEAD-box helicase ATP-binding protein;Oryzabase Gene Symbol Synonym(s)=OsABP%2C OsRH31;Oryzabase Gene Name Synonym(s)=ATP-binding protein%2C DEAD-box helicase ATP-binding protein%2C OsABP helicase%2C DEAD-box ATP-dependent RNA helicase 31%2C RNA helicase 31;Note=DEAD-box helicase ATP-binding protein%2C Response to abiotic stress (salt%2C dehydration%2C ABA%2C blue and red light);Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: ATP binding (GO:0005524);InterPro=Helicase superfamily 1/2%2C ATP-binding domain (IPR014001),DEAD/DEAH box helicase domain (IPR011545),P-loop containing nucleoside triphosphate hydrolase (IPR027417),Helicase%2C C-terminal (IPR001650),ATP-dependent RNA helicase DEAD-box%2C conserved site (IPR000629);NIAS_FLcDNA=J065148F23 (truncated);Manual Curation=March 21%2C 2017;Literature_PMID=22899052;Oryzabase=11568;TENOR=Os06t0526600-01;KEGG=Os06t0526600-01 (EC:3.6.4.13);B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	19523342	19524702	.	-	0	Parent=Os06t0526600-01
Chr06	irgsp1_rep	CDS	19521217	19521273	.	-	1	Parent=Os06t0526600-01
Chr06	irgsp1_rep	CDS	19520970	19521081	.	-	1	Parent=Os06t0526600-01
Chr06	irgsp1_rep	CDS	19520643	19520867	.	-	0	Parent=Os06t0526600-01
Chr06	irgsp1_rep	CDS	19520355	19520561	.	-	0	Parent=Os06t0526600-01
Chr06	irgsp1_rep	CDS	19520198	19520284	.	-	0	Parent=Os06t0526600-01
Chr06	irgsp1_rep	CDS	19519981	19520076	.	-	0	Parent=Os06t0526600-01
Chr06	irgsp1_rep	CDS	19519699	19519914	.	-	0	Parent=Os06t0526600-01
Chr06	irgsp1_rep	CDS	19519281	19519463	.	-	0	Parent=Os06t0526600-01
Chr06	irgsp1_rep	CDS	19517320	19517547	.	-	0	Parent=Os06t0526600-01
Chr06	irgsp1_rep	three_prime_UTR	19516630	19517319	.	-	.	Parent=Os06t0526600-01
Chr06	irgsp1_rep	mRNA	19517354	19519864	.	+	.	ID=Os06t0526650-00;Name=Os06t0526650-00;Locus_id=Os06g0526650;Note=Non-protein coding transcript.;Transcript_evidence=AF366447 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0526650-00
Chr06	irgsp1_rep	exon	19517354	19517528	.	+	.	Parent=Os06t0526650-00
Chr06	irgsp1_rep	exon	19519264	19519449	.	+	.	Parent=Os06t0526650-00
Chr06	irgsp1_rep	exon	19519688	19519864	.	+	.	Parent=Os06t0526650-00
Chr06	irgsp1_rep	mRNA	19527051	19529692	.	-	.	ID=Os06t0526700-00;Name=Os06t0526700-00;Locus_id=Os06g0526700;Oryzabase Gene Symbol Synonym(s)=OsPP2C55%2C PP2C55%2C OsPP86;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C55%2C protein phosphatase 2C 55%2C protein phosphatase 86;Note=Probable protein phosphatase 2C 55.;Transcript_evidence=Q652Z7 (UniProt);ORF_evidence=Q652Z7 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);Oryzabase=17928;TENOR=Os06t0526700-00
Chr06	irgsp1_rep	CDS	19529346	19529692	.	-	0	Parent=Os06t0526700-00
Chr06	irgsp1_rep	CDS	19529076	19529203	.	-	1	Parent=Os06t0526700-00
Chr06	irgsp1_rep	CDS	19528891	19528989	.	-	2	Parent=Os06t0526700-00
Chr06	irgsp1_rep	CDS	19528622	19528783	.	-	2	Parent=Os06t0526700-00
Chr06	irgsp1_rep	CDS	19528228	19528314	.	-	2	Parent=Os06t0526700-00
Chr06	irgsp1_rep	CDS	19528029	19528120	.	-	2	Parent=Os06t0526700-00
Chr06	irgsp1_rep	CDS	19527460	19527534	.	-	0	Parent=Os06t0526700-00
Chr06	irgsp1_rep	CDS	19527051	19527197	.	-	0	Parent=Os06t0526700-00
Chr06	irgsp1_rep	mRNA	19531822	19541910	.	-	.	ID=Os06t0526800-00;Name=Os06t0526800-00;Locus_id=Os06g0526800;Oryzabase Gene Symbol Synonym(s)=OsPP2C56%2C PP2C56%2C OsPP87;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C56%2C protein phosphatase 2C 56%2C protein phosphatase 87;Note=Probable protein phosphatase 2C 56.;Transcript_evidence=Q0DBU3 (UniProt);ORF_evidence=Q0DBU3 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);Oryzabase=17929;TENOR=Os06t0526800-00
Chr06	irgsp1_rep	CDS	19541642	19541910	.	-	0	Parent=Os06t0526800-00
Chr06	irgsp1_rep	CDS	19533808	19533935	.	-	1	Parent=Os06t0526800-00
Chr06	irgsp1_rep	CDS	19533631	19533729	.	-	2	Parent=Os06t0526800-00
Chr06	irgsp1_rep	CDS	19533366	19533527	.	-	2	Parent=Os06t0526800-00
Chr06	irgsp1_rep	CDS	19532913	19532999	.	-	2	Parent=Os06t0526800-00
Chr06	irgsp1_rep	CDS	19532714	19532805	.	-	2	Parent=Os06t0526800-00
Chr06	irgsp1_rep	CDS	19532157	19532231	.	-	0	Parent=Os06t0526800-00
Chr06	irgsp1_rep	CDS	19531822	19531968	.	-	0	Parent=Os06t0526800-00
Chr06	irgsp1_rep	mRNA	19544600	19553006	.	+	.	ID=Os06t0527100-01;Name=Os06t0527100-01;Locus_id=Os06g0527100;CGSNL Gene Symbol=CNGC12;CGSNL Gene Name=CYCLIC NUCLEOTIDE GATED CHANNEL 12;Oryzabase Gene Symbol Synonym(s)=OsCNGC12%2C OsCNGC2;Oryzabase Gene Name Synonym(s)=Cyclic nucleotide gated channel 12%2C Cyclic nucleotide-gated ion channel 2;Note=Similar to Cyclic nucleotide-gated channel A (Fragment).;Transcript_evidence=AK099993 (DDBJ%2C Best hit);ORF_evidence=B6U0R1 (UniProt);GO=Biological Process: ion transport (GO:0006811),Biological Process: potassium ion transport (GO:0006813),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: ion channel activity (GO:0005216),Molecular Function: voltage-gated potassium channel activity (GO:0005249);InterPro=Cyclic nucleotide-binding domain (IPR000595),Potassium channel%2C voltage-dependent%2C EAG/ELK/ERG (IPR003938),Ion transport (IPR005821),RmlC-like jelly roll fold (IPR014710),Cyclic nucleotide-binding-like (IPR018490);NIAS_FLcDNA=J013132D09;Oryzabase=15485;Expression=AK099993;TENOR=Os06t0527100-01;KEGG=Os06t0527100-01
Chr06	irgsp1_rep	five_prime_UTR	19544600	19544765	.	+	.	Parent=Os06t0527100-01
Chr06	irgsp1_rep	five_prime_UTR	19546033	19546121	.	+	.	Parent=Os06t0527100-01
Chr06	irgsp1_rep	CDS	19546122	19546153	.	+	0	Parent=Os06t0527100-01
Chr06	irgsp1_rep	CDS	19547038	19547554	.	+	1	Parent=Os06t0527100-01
Chr06	irgsp1_rep	CDS	19547991	19548203	.	+	0	Parent=Os06t0527100-01
Chr06	irgsp1_rep	CDS	19549491	19549765	.	+	0	Parent=Os06t0527100-01
Chr06	irgsp1_rep	CDS	19549861	19549972	.	+	1	Parent=Os06t0527100-01
Chr06	irgsp1_rep	CDS	19550547	19550783	.	+	0	Parent=Os06t0527100-01
Chr06	irgsp1_rep	CDS	19551947	19552645	.	+	0	Parent=Os06t0527100-01
Chr06	irgsp1_rep	three_prime_UTR	19552646	19553006	.	+	.	Parent=Os06t0527100-01
Chr06	irgsp1_rep	mRNA	19552055	19553885	.	-	.	ID=Os06t0527201-01;Name=Os06t0527201-01;Locus_id=Os06g0527201;Note=Hypothetical gene.;Transcript_evidence=AK288430 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090033E19;TENOR=Os06t0527201-01;KEGG=Os06t0527201-01
Chr06	irgsp1_rep	five_prime_UTR	19552696	19553885	.	-	.	Parent=Os06t0527201-01
Chr06	irgsp1_rep	CDS	19552345	19552695	.	-	0	Parent=Os06t0527201-01
Chr06	irgsp1_rep	three_prime_UTR	19552055	19552344	.	-	.	Parent=Os06t0527201-01
Chr06	irgsp1_rep	mRNA	19560072	19562846	.	+	.	ID=Os06t0527300-01;Name=Os06t0527300-01;Locus_id=Os06g0527300;CGSNL Gene Symbol=CNGC13;CGSNL Gene Name=CYCLIC NUCLEOTIDE GATED CHANNEL 13;Oryzabase Gene Symbol Synonym(s)=OsCNGC13;Oryzabase Gene Name Synonym(s)=Cyclic nucleotide gated channel 13;Note=Similar to cDNA clone:J023078M02%2C full insert sequence.;Transcript_evidence=AK119931 (DDBJ%2C Best hit);ORF_evidence=B7EQ98 (UniProt);NIAS_FLcDNA=002-184-A07;Oryzabase=15486;TENOR=Os06t0527300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	19560072	19560184	.	+	0	Parent=Os06t0527300-01
Chr06	irgsp1_rep	CDS	19561539	19562055	.	+	1	Parent=Os06t0527300-01
Chr06	irgsp1_rep	CDS	19562478	19562720	.	+	0	Parent=Os06t0527300-01
Chr06	irgsp1_rep	three_prime_UTR	19562721	19562846	.	+	.	Parent=Os06t0527300-01
Chr06	irgsp1_rep	mRNA	19569728	19571368	.	-	.	ID=Os06t0527500-01;Name=Os06t0527500-01;Locus_id=Os06g0527500;Note=Conserved hypothetical protein.;Transcript_evidence=AK072021 (DDBJ%2C Best hit),AK120457 (DDBJ%2C Best hit);ORF_evidence=B8B3D4 (UniProt);NIAS_FLcDNA=J013105H04,J013105J08;TENOR=Os06t0527500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	19569959	19571368	.	-	.	Parent=Os06t0527500-01
Chr06	irgsp1_rep	CDS	19569782	19569958	.	-	0	Parent=Os06t0527500-01
Chr06	irgsp1_rep	three_prime_UTR	19569728	19569781	.	-	.	Parent=Os06t0527500-01
Chr06	irgsp1_rep	mRNA	19569640	19571313	.	-	.	ID=Os06t0527500-02;Name=Os06t0527500-02;Locus_id=Os06g0527500;Note=Conserved hypothetical protein.;Transcript_evidence=AK107464 (DDBJ%2C Best hit);ORF_evidence=B8B3D4 (UniProt);NIAS_FLcDNA=002-129-A09;TENOR=Os06t0527500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	19569959	19571313	.	-	.	Parent=Os06t0527500-02
Chr06	irgsp1_rep	CDS	19569782	19569958	.	-	0	Parent=Os06t0527500-02
Chr06	irgsp1_rep	three_prime_UTR	19569640	19569781	.	-	.	Parent=Os06t0527500-02
Chr06	irgsp1_rep	mRNA	19583323	19585408	.	-	.	ID=Os06t0527800-01;Name=Os06t0527800-01;Locus_id=Os06g0527800;RAP-DB Gene Symbol Synonym(s)=OsPYL/RCAR7;RAP-DB Gene Name Synonym(s)=PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 7;CGSNL Gene Symbol=PYL/RCAR7;CGSNL Gene Name=PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 7;Oryzabase Gene Symbol Synonym(s)=OsPYL/RCAR7%2C PYL7%2C OsPYL7%2C OsPYL8%2C PYL8%2C OsEnS-90%2C RCAR1%2C OsRCAR1;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 90%2C pyrabactin resistance-like 7%2C PYR1-like 8%2C pyrabactin resistance 1-like 8;Note=ABA receptor%2C Drought tolerance;Transcript_evidence=AK108261;ORF_evidence=Q652Y8;InterPro=START-like domain superfamily (IPR023393),Polyketide cyclase/dehydrase (IPR019587);NIAS_FLcDNA=002-141-B05;Manual Curation=June 18%2C 2020;Literature_PMID=32545174;Oryzabase=17874;Expression=AK108261;TENOR=Os06t0527800-01;KEGG=Os06t0527800-01
Chr06	irgsp1_rep	five_prime_UTR	19585324	19585408	.	-	.	Parent=Os06t0527800-01
Chr06	irgsp1_rep	CDS	19585117	19585323	.	-	0	Parent=Os06t0527800-01
Chr06	irgsp1_rep	CDS	19584150	19584368	.	-	0	Parent=Os06t0527800-01
Chr06	irgsp1_rep	CDS	19583575	19583769	.	-	0	Parent=Os06t0527800-01
Chr06	irgsp1_rep	three_prime_UTR	19583323	19583574	.	-	.	Parent=Os06t0527800-01
Chr06	irgsp1_rep	mRNA	19604360	19606116	.	-	.	ID=Os06t0528300-00;Name=Os06t0528300-00;Locus_id=Os06g0528300;CGSNL Gene Symbol=PYL/RCAR8;CGSNL Gene Name=PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 8;Oryzabase Gene Symbol Synonym(s)=OsPYL/RCAR8%2C PYL8%2C OsPYL8%2C OsPYL9%2C PYL9%2C CAPIP1;Oryzabase Gene Name Synonym(s)=pyrabactin resistance-like 8%2C PYR1-like 9%2C pyrabactin resistance 1-like 9;Note=Similar to Polyketide cyclase.;Transcript_evidence=ab initio prediction;ORF_evidence=A2X334 (UniProt);InterPro=Polyketide cyclase/dehydrase (IPR019587),START-like domain (IPR023393);Oryzabase=17875;TENOR=Os06t0528300-00;KEGG=Os06t0528300-00
Chr06	irgsp1_rep	CDS	19605910	19606116	.	-	0	Parent=Os06t0528300-00
Chr06	irgsp1_rep	CDS	19604938	19605156	.	-	0	Parent=Os06t0528300-00
Chr06	irgsp1_rep	CDS	19604360	19604554	.	-	0	Parent=Os06t0528300-00
Chr06	irgsp1_rep	mRNA	19610157	19612031	.	-	.	ID=Os06t0528350-01;Name=Os06t0528350-01;Locus_id=Os06g0528350;Note=Conserved hypothetical protein.;Transcript_evidence=AK241019 (DDBJ%2C Best hit);ORF_evidence=NP_001174831.1 (RefSeq);NIAS_FLcDNA=J065054O17;TENOR=Os06t0528350-01;KEGG=Os06t0528350-01
Chr06	irgsp1_rep	five_prime_UTR	19611920	19612031	.	-	.	Parent=Os06t0528350-01
Chr06	irgsp1_rep	five_prime_UTR	19610592	19611122	.	-	.	Parent=Os06t0528350-01
Chr06	irgsp1_rep	CDS	19610304	19610591	.	-	0	Parent=Os06t0528350-01
Chr06	irgsp1_rep	three_prime_UTR	19610157	19610303	.	-	.	Parent=Os06t0528350-01
Chr06	irgsp1_rep	mRNA	19614314	19619657	.	+	.	ID=Os06t0528600-01;Name=Os06t0528600-01;Locus_id=Os06g0528600;RAP-DB Gene Symbol Synonym(s)=OsSPMS1%2C OsSPDS2;RAP-DB Gene Name Synonym(s)=spermidine synthase 2%2C spermidine synthase 1;CGSNL Gene Symbol=SPDS2;CGSNL Gene Name=SPERMIDINE SYNTHASE 2;Oryzabase Gene Symbol Synonym(s)=OsSPDS2%2C OsSPMS1%2C SPMS1;Oryzabase Gene Name Synonym(s)=spermidine synthase 2%2C spermine synthase 1%2C spermidine/spermine synthase 1;Note=Spermine synthase%2C Spermidine synthase%2C Negative regulation of seed germination%2C grain size%2C and grain yield%2C Chilling response;Transcript_evidence=AK067301,AK068518;ORF_evidence=Q7XAP2;GO=Biological Process: polyamine metabolic process (GO:0006595),Molecular Function: catalytic activity (GO:0003824);InterPro=Spermidine synthase%2C tetramerisation domain superfamily (IPR037163),S-adenosyl-L-methionine-dependent methyltransferase (IPR029063),Spermidine/spermine synthases (IPR001045),Spermidine/spermine synthase%2C eukaryotes (IPR030668),Polyamine biosynthesis  domain (IPR030374),Spermidine synthase%2C tetramerisation domain (IPR035246),Polyamine biosynthesis domain%2C conserved site (IPR030373);NIAS_FLcDNA=J013105J05,J013155G09;Manual Curation=December 10%2C 2018;Literature_PMID=30190417,15310079;Oryzabase=14653;Expression=AK067301;TENOR=Os06t0528600-01;KEGG=Os06t0528600-01 (EC:2.5.1.16);Subcellular location=nucleus (GO:0005634), plasma membrane (GO:0005886), cytoplasm (GO:0005737)
Chr06	irgsp1_rep	five_prime_UTR	19614314	19614422	.	+	.	Parent=Os06t0528600-01
Chr06	irgsp1_rep	five_prime_UTR	19615280	19615310	.	+	.	Parent=Os06t0528600-01
Chr06	irgsp1_rep	CDS	19615311	19615497	.	+	0	Parent=Os06t0528600-01
Chr06	irgsp1_rep	CDS	19615619	19615663	.	+	2	Parent=Os06t0528600-01
Chr06	irgsp1_rep	CDS	19616286	19616362	.	+	2	Parent=Os06t0528600-01
Chr06	irgsp1_rep	CDS	19616472	19616594	.	+	0	Parent=Os06t0528600-01
Chr06	irgsp1_rep	CDS	19616849	19616953	.	+	0	Parent=Os06t0528600-01
Chr06	irgsp1_rep	CDS	19617037	19617109	.	+	0	Parent=Os06t0528600-01
Chr06	irgsp1_rep	CDS	19617408	19617479	.	+	2	Parent=Os06t0528600-01
Chr06	irgsp1_rep	CDS	19617769	19617964	.	+	2	Parent=Os06t0528600-01
Chr06	irgsp1_rep	CDS	19618816	19618945	.	+	1	Parent=Os06t0528600-01
Chr06	irgsp1_rep	CDS	19619098	19619172	.	+	0	Parent=Os06t0528600-01
Chr06	irgsp1_rep	CDS	19619290	19619370	.	+	0	Parent=Os06t0528600-01
Chr06	irgsp1_rep	three_prime_UTR	19619371	19619657	.	+	.	Parent=Os06t0528600-01
Chr06	irgsp1_rep	mRNA	19619923	19621610	.	-	.	ID=Os06t0528700-01;Name=Os06t0528700-01;Locus_id=Os06g0528700;Note=Flavin-containing monooxygenase FMO family protein.;Transcript_evidence=AK105641 (DDBJ%2C Best hit);ORF_evidence=B7EKX6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: flavin-containing monooxygenase activity (GO:0004499),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=Flavin monooxygenase FMO (IPR000960),Flavin monooxygenase-like (IPR020946);NIAS_FLcDNA=001-200-E08;Expression=AK105641;TENOR=Os06t0528700-01;KEGG=Os06t0528700-01
Chr06	irgsp1_rep	five_prime_UTR	19621535	19621610	.	-	.	Parent=Os06t0528700-01
Chr06	irgsp1_rep	CDS	19620077	19621534	.	-	0	Parent=Os06t0528700-01
Chr06	irgsp1_rep	three_prime_UTR	19619923	19620076	.	-	.	Parent=Os06t0528700-01
Chr06	irgsp1_rep	mRNA	19663227	19669542	.	+	.	ID=Os06t0529800-01;Name=Os06t0529800-01;Locus_id=Os06g0529800;Note=Zinc finger%2C PHD-type domain containing protein.;Transcript_evidence=AK071835 (DDBJ%2C Best hit);ORF_evidence=B8B3A6 (UniProt);GO=Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C N-recognin (IPR003126),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J023115A04;Expression=AK071835;TENOR=Os06t0529800-01;KEGG=Os06t0529800-01
Chr06	irgsp1_rep	five_prime_UTR	19663227	19663365	.	+	.	Parent=Os06t0529800-01
Chr06	irgsp1_rep	CDS	19663366	19663476	.	+	0	Parent=Os06t0529800-01
Chr06	irgsp1_rep	CDS	19663600	19663758	.	+	0	Parent=Os06t0529800-01
Chr06	irgsp1_rep	CDS	19666182	19666442	.	+	0	Parent=Os06t0529800-01
Chr06	irgsp1_rep	CDS	19666980	19667618	.	+	0	Parent=Os06t0529800-01
Chr06	irgsp1_rep	CDS	19669174	19669266	.	+	0	Parent=Os06t0529800-01
Chr06	irgsp1_rep	three_prime_UTR	19669267	19669542	.	+	.	Parent=Os06t0529800-01
Chr06	irgsp1_rep	mRNA	19701309	19702347	.	+	.	ID=Os06t0529900-00;Name=Os06t0529900-00;Locus_id=Os06g0529900;Note=Hypothetical conserved gene.;Transcript_evidence=CT829739 (DDBJ%2C Best hit);ORF_evidence=A2YDN8 (UniProt);TENOR=Os06t0529900-00;KEGG=Os06t0529900-00
Chr06	irgsp1_rep	five_prime_UTR	19701309	19701372	.	+	.	Parent=Os06t0529900-00
Chr06	irgsp1_rep	CDS	19701373	19701574	.	+	0	Parent=Os06t0529900-00
Chr06	irgsp1_rep	CDS	19701590	19701831	.	+	2	Parent=Os06t0529900-00
Chr06	irgsp1_rep	three_prime_UTR	19701832	19702347	.	+	.	Parent=Os06t0529900-00
Chr06	irgsp1_rep	mRNA	19730665	19734971	.	+	.	ID=Os06t0530200-01;Name=Os06t0530200-01;Locus_id=Os06g0530200;Note=Conserved hypothetical protein.;Transcript_evidence=AK073116 (DDBJ%2C Best hit);ORF_evidence=XP_002437073.1 (RefSeq);NIAS_FLcDNA=J033020J17;Expression=AK073116;TENOR=Os06t0530200-01;KEGG=Os06t0530200-01
Chr06	irgsp1_rep	five_prime_UTR	19730665	19730762	.	+	.	Parent=Os06t0530200-01
Chr06	irgsp1_rep	CDS	19730763	19730829	.	+	0	Parent=Os06t0530200-01
Chr06	irgsp1_rep	CDS	19730966	19731010	.	+	2	Parent=Os06t0530200-01
Chr06	irgsp1_rep	CDS	19732945	19733102	.	+	2	Parent=Os06t0530200-01
Chr06	irgsp1_rep	CDS	19734734	19734751	.	+	0	Parent=Os06t0530200-01
Chr06	irgsp1_rep	three_prime_UTR	19734752	19734971	.	+	.	Parent=Os06t0530200-01
Chr06	irgsp1_rep	mRNA	19730691	19734991	.	+	.	ID=Os06t0530200-02;Name=Os06t0530200-02;Locus_id=Os06g0530200;Note=Conserved hypothetical protein.;Transcript_evidence=AK104077 (DDBJ%2C Best hit);ORF_evidence=XP_002437073.1 (RefSeq);NIAS_FLcDNA=001-028-D06;Expression=AK104077;TENOR=Os06t0530200-02;KEGG=Os06t0530200-02
Chr06	irgsp1_rep	five_prime_UTR	19730691	19730762	.	+	.	Parent=Os06t0530200-02
Chr06	irgsp1_rep	CDS	19730763	19730829	.	+	0	Parent=Os06t0530200-02
Chr06	irgsp1_rep	CDS	19730966	19731010	.	+	2	Parent=Os06t0530200-02
Chr06	irgsp1_rep	CDS	19732945	19733102	.	+	2	Parent=Os06t0530200-02
Chr06	irgsp1_rep	CDS	19734734	19734751	.	+	0	Parent=Os06t0530200-02
Chr06	irgsp1_rep	three_prime_UTR	19734752	19734991	.	+	.	Parent=Os06t0530200-02
Chr06	irgsp1_rep	mRNA	19737618	19740526	.	+	.	ID=Os06t0530300-01;Name=Os06t0530300-01;Locus_id=Os06g0530300;Note=Similar to uncharacterized BCR%2C COG1963 family protein.;Transcript_evidence=AK242514 (DDBJ%2C Best hit);ORF_evidence=B6TQU2 (UniProt);InterPro=Acid phosphatase/vanadium-dependent haloperoxidase-related (IPR003832);NIAS_FLcDNA=J080312C24;TENOR=Os06t0530300-01;KEGG=Os06t0530300-01
Chr06	irgsp1_rep	five_prime_UTR	19737618	19737618	.	+	.	Parent=Os06t0530300-01
Chr06	irgsp1_rep	CDS	19737619	19737656	.	+	0	Parent=Os06t0530300-01
Chr06	irgsp1_rep	CDS	19737981	19738047	.	+	1	Parent=Os06t0530300-01
Chr06	irgsp1_rep	CDS	19739877	19740287	.	+	0	Parent=Os06t0530300-01
Chr06	irgsp1_rep	three_prime_UTR	19740288	19740526	.	+	.	Parent=Os06t0530300-01
Chr06	irgsp1_rep	mRNA	19743865	19746351	.	-	.	ID=Os06t0530400-01;Name=Os06t0530400-01;Locus_id=Os06g0530400;CGSNL Gene Symbol=NAC7;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 7;Oryzabase Gene Symbol Synonym(s)=OsNAC7%2C ONAC076%2C NAC76%2C OsNAC7/ONAC093%2C ONAC093%2C ONAC93%2C NAC93%2C DLN167%2C OsDLN167;Oryzabase Gene Name Synonym(s)=OsNAC7 protein%2C NAC domain-containing protein 76%2C NAC domain-containing protein 093%2C NAC domain-containing protein 93%2C DLN repressor 167%2C DLN motif protein 167;Note=Similar to NAC domain-containing protein 76.;Transcript_evidence=AK102224 (DDBJ%2C Best hit);ORF_evidence=Q5Z6B6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=J033087M22;Oryzabase=6234;Expression=AK102224;TENOR=Os06t0530400-01;KEGG=Os06t0530400-01
Chr06	irgsp1_rep	five_prime_UTR	19746238	19746351	.	-	.	Parent=Os06t0530400-01
Chr06	irgsp1_rep	five_prime_UTR	19746036	19746066	.	-	.	Parent=Os06t0530400-01
Chr06	irgsp1_rep	CDS	19745867	19746035	.	-	0	Parent=Os06t0530400-01
Chr06	irgsp1_rep	CDS	19745297	19745736	.	-	2	Parent=Os06t0530400-01
Chr06	irgsp1_rep	three_prime_UTR	19743865	19745296	.	-	.	Parent=Os06t0530400-01
Chr06	irgsp1_rep	mRNA	19780992	19781426	.	+	.	ID=Os06t0530600-00;Name=Os06t0530600-00;Locus_id=Os06g0530600;Oryzabase Gene Symbol Synonym(s)=OsVQ22;Oryzabase Gene Name Synonym(s)=VQ motif-containing protein 22;Note=VQ domain containing protein.;Transcript_evidence=EU969510 (DDBJ);ORF_evidence=NP_001151100.1 (RefSeq);InterPro=VQ (IPR008889);Oryzabase=13638;TENOR=Os06t0530600-00;KEGG=Os06t0530600-00
Chr06	irgsp1_rep	CDS	19780992	19781426	.	+	0	Parent=Os06t0530600-00
Chr06	irgsp1_rep	mRNA	19783475	19785258	.	-	.	ID=Os06t0530700-01;Name=Os06t0530700-01;Locus_id=Os06g0530700;Note=tRNA intron endonuclease%2C catalytic domain-like domain containing protein.;Transcript_evidence=AK102915 (DDBJ%2C Best hit);ORF_evidence=B8B3A8 (UniProt);GO=Biological Process: tRNA splicing%2C via endonucleolytic cleavage and ligation (GO:0006388),Molecular Function: tRNA-intron endonuclease activity (GO:0000213),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: nuclease activity (GO:0004518);InterPro=tRNA intron endonuclease%2C catalytic domain-like (IPR006677),tRNA intron endonuclease%2C N-terminal (IPR006678),Endonuclease TnsA%2C N-terminal/resolvase Hjc/tRNA endonuclease%2C C-terminal (IPR011856);NIAS_FLcDNA=J033113N10;TENOR=Os06t0530700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	19785162	19785258	.	-	.	Parent=Os06t0530700-01
Chr06	irgsp1_rep	five_prime_UTR	19784852	19784883	.	-	.	Parent=Os06t0530700-01
Chr06	irgsp1_rep	five_prime_UTR	19784566	19784579	.	-	.	Parent=Os06t0530700-01
Chr06	irgsp1_rep	CDS	19783657	19784565	.	-	0	Parent=Os06t0530700-01
Chr06	irgsp1_rep	three_prime_UTR	19783475	19783656	.	-	.	Parent=Os06t0530700-01
Chr06	irgsp1_rep	mRNA	19783445	19785258	.	-	.	ID=Os06t0530700-02;Name=Os06t0530700-02;Locus_id=Os06g0530700;Note=Endonuclease TnsA%2C N-terminal/resolvase Hjc/tRNA endonuclease%2C C-terminal domain containing protein.;Transcript_evidence=AK059057 (DDBJ%2C Best hit);ORF_evidence=NP_001148986.1 (RefSeq);GO=Biological Process: tRNA splicing%2C via endonucleolytic cleavage and ligation (GO:0006388),Molecular Function: tRNA-intron endonuclease activity (GO:0000213),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: nuclease activity (GO:0004518);InterPro=tRNA intron endonuclease%2C catalytic domain-like (IPR006677),tRNA intron endonuclease%2C N-terminal (IPR006678),Endonuclease TnsA%2C N-terminal/resolvase Hjc/tRNA endonuclease%2C C-terminal (IPR011856);NIAS_FLcDNA=001-021-F06;Expression=AK059057;TENOR=Os06t0530700-02;KEGG=Os06t0530700-02 (EC:3.1.27.9)
Chr06	irgsp1_rep	five_prime_UTR	19785162	19785258	.	-	.	Parent=Os06t0530700-02
Chr06	irgsp1_rep	five_prime_UTR	19784539	19784579	.	-	.	Parent=Os06t0530700-02
Chr06	irgsp1_rep	CDS	19783657	19784538	.	-	0	Parent=Os06t0530700-02
Chr06	irgsp1_rep	three_prime_UTR	19783445	19783656	.	-	.	Parent=Os06t0530700-02
Chr06	irgsp1_rep	mRNA	19783163	19783556	.	-	.	ID=Os06t0530700-03;Name=Os06t0530700-03;Locus_id=Os06g0530700;Note=Non-protein coding transcript.;Transcript_evidence=AK058455 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-015-H07;TENOR=Os06t0530700-03
Chr06	irgsp1_rep	exon	19783163	19783556	.	-	.	Parent=Os06t0530700-03
Chr06	irgsp1_rep	mRNA	19814273	19818233	.	+	.	ID=Os06t0531000-00;Name=Os06t0531000-00;Locus_id=Os06g0531000;Note=Similar to predicted protein.;Transcript_evidence=BT067286 (DDBJ);ORF_evidence=NP_174300.2 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);TENOR=Os06t0531000-00;KEGG=Os06t0531000-00
Chr06	irgsp1_rep	CDS	19814273	19814907	.	+	0	Parent=Os06t0531000-00
Chr06	irgsp1_rep	CDS	19815879	19816348	.	+	1	Parent=Os06t0531000-00
Chr06	irgsp1_rep	CDS	19817848	19818233	.	+	2	Parent=Os06t0531000-00
Chr06	irgsp1_rep	mRNA	19824559	19829594	.	-	.	ID=Os06t0531200-01;Name=Os06t0531200-01;Locus_id=Os06g0531200;Oryzabase Gene Symbol Synonym(s)=OsDJ-1E%2C DJ-1E;Oryzabase Gene Name Synonym(s)=DJ-1/PfpI domain containing protein E%2C DJ-1 protein E;Note=ThiJ/PfpI domain containing protein.;Transcript_evidence=AK105855 (DDBJ%2C Best hit),AK072614 (DDBJ%2C Best hit);ORF_evidence=B8B3B1 (UniProt);NIAS_FLcDNA=001-203-H05,J023133K03;Oryzabase=20916;TENOR=Os06t0531200-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	19829475	19829594	.	-	.	Parent=Os06t0531200-01
Chr06	irgsp1_rep	CDS	19829450	19829474	.	-	0	Parent=Os06t0531200-01
Chr06	irgsp1_rep	CDS	19829125	19829327	.	-	2	Parent=Os06t0531200-01
Chr06	irgsp1_rep	CDS	19827766	19827915	.	-	0	Parent=Os06t0531200-01
Chr06	irgsp1_rep	CDS	19827497	19827679	.	-	0	Parent=Os06t0531200-01
Chr06	irgsp1_rep	CDS	19826595	19826675	.	-	0	Parent=Os06t0531200-01
Chr06	irgsp1_rep	CDS	19825693	19825893	.	-	0	Parent=Os06t0531200-01
Chr06	irgsp1_rep	CDS	19825074	19825214	.	-	0	Parent=Os06t0531200-01
Chr06	irgsp1_rep	CDS	19824749	19824949	.	-	0	Parent=Os06t0531200-01
Chr06	irgsp1_rep	three_prime_UTR	19824559	19824748	.	-	.	Parent=Os06t0531200-01
Chr06	irgsp1_rep	mRNA	19824521	19827829	.	-	.	ID=Os06t0531200-02;Name=Os06t0531200-02;Locus_id=Os06g0531200;Oryzabase Gene Symbol Synonym(s)=OsDJ-1E%2C DJ-1E;Oryzabase Gene Name Synonym(s)=DJ-1/PfpI domain containing protein E%2C DJ-1 protein E;Note=Hypothetical conserved gene.;Transcript_evidence=AK060016 (DDBJ%2C Best hit);ORF_evidence=B9FTL1 (UniProt);InterPro=ThiJ/PfpI (IPR002818),DJ-1 (IPR006287);NIAS_FLcDNA=006-302-F09;Oryzabase=20916;Expression=AK060016;TENOR=Os06t0531200-02;KEGG=Os06t0531200-02
Chr06	irgsp1_rep	five_prime_UTR	19827829	19827829	.	-	.	Parent=Os06t0531200-02
Chr06	irgsp1_rep	CDS	19827766	19827828	.	-	0	Parent=Os06t0531200-02
Chr06	irgsp1_rep	CDS	19827497	19827679	.	-	0	Parent=Os06t0531200-02
Chr06	irgsp1_rep	CDS	19826595	19826675	.	-	0	Parent=Os06t0531200-02
Chr06	irgsp1_rep	CDS	19825693	19825893	.	-	0	Parent=Os06t0531200-02
Chr06	irgsp1_rep	CDS	19825074	19825214	.	-	0	Parent=Os06t0531200-02
Chr06	irgsp1_rep	CDS	19824749	19824949	.	-	0	Parent=Os06t0531200-02
Chr06	irgsp1_rep	three_prime_UTR	19824521	19824748	.	-	.	Parent=Os06t0531200-02
Chr06	irgsp1_rep	mRNA	19833723	19835250	.	+	.	ID=Os06t0531400-01;Name=Os06t0531400-01;Locus_id=Os06g0531400;Oryzabase Gene Symbol Synonym(s)=OsTBL20%2C TBL20;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 20;Note=Protein of unknown function DUF231 domain containing protein.;Transcript_evidence=AK241266 (DDBJ%2C Best hit);ORF_evidence=A8Y5V3 (UniProt);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=J065132E07;Oryzabase=21475;TENOR=Os06t0531400-01;KEGG=Os06t0531400-01
Chr06	irgsp1_rep	five_prime_UTR	19833723	19833825	.	+	.	Parent=Os06t0531400-01
Chr06	irgsp1_rep	CDS	19833826	19834070	.	+	0	Parent=Os06t0531400-01
Chr06	irgsp1_rep	CDS	19834166	19834522	.	+	1	Parent=Os06t0531400-01
Chr06	irgsp1_rep	CDS	19834625	19835135	.	+	1	Parent=Os06t0531400-01
Chr06	irgsp1_rep	three_prime_UTR	19835136	19835250	.	+	.	Parent=Os06t0531400-01
Chr06	irgsp1_rep	mRNA	19833803	19834552	.	-	.	ID=Os06t0531500-00;Name=Os06t0531500-00;Locus_id=Os06g0531500;Note=Hypothetical protein.;Transcript_evidence=EU969467 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0531500-00
Chr06	irgsp1_rep	five_prime_UTR	19834551	19834552	.	-	.	Parent=Os06t0531500-00
Chr06	irgsp1_rep	CDS	19834389	19834550	.	-	0	Parent=Os06t0531500-00
Chr06	irgsp1_rep	CDS	19834131	19834337	.	-	0	Parent=Os06t0531500-00
Chr06	irgsp1_rep	three_prime_UTR	19833803	19834130	.	-	.	Parent=Os06t0531500-00
Chr06	irgsp1_rep	mRNA	19839394	19842519	.	-	.	ID=Os06t0531600-01;Name=Os06t0531600-01;Locus_id=Os06g0531600;CGSNL Gene Symbol=GELP84;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 84;Oryzabase Gene Symbol Synonym(s)=OsGELP84;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 84;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK059898 (DDBJ%2C Best hit);ORF_evidence=B4FSK3 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=006-208-F09;Oryzabase=11034;Expression=AK059898;TENOR=Os06t0531600-01;KEGG=Os06t0531600-01
Chr06	irgsp1_rep	five_prime_UTR	19842472	19842519	.	-	.	Parent=Os06t0531600-01
Chr06	irgsp1_rep	CDS	19842210	19842471	.	-	0	Parent=Os06t0531600-01
Chr06	irgsp1_rep	CDS	19841885	19842100	.	-	2	Parent=Os06t0531600-01
Chr06	irgsp1_rep	CDS	19841634	19841782	.	-	2	Parent=Os06t0531600-01
Chr06	irgsp1_rep	CDS	19841283	19841556	.	-	0	Parent=Os06t0531600-01
Chr06	irgsp1_rep	CDS	19839650	19839876	.	-	2	Parent=Os06t0531600-01
Chr06	irgsp1_rep	three_prime_UTR	19839394	19839649	.	-	.	Parent=Os06t0531600-01
Chr06	irgsp1_rep	mRNA	19838860	19840122	.	-	.	ID=Os06t0531600-02;Name=Os06t0531600-02;Locus_id=Os06g0531600;CGSNL Gene Symbol=GELP84;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 84;Oryzabase Gene Symbol Synonym(s)=OsGELP84;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 84;Note=Similar to Esterase.;Transcript_evidence=AK120456 (DDBJ%2C Best hit);ORF_evidence=B4FSK3 (UniProt);NIAS_FLcDNA=J013105I19;Oryzabase=11034;Expression=AK120456;TENOR=Os06t0531600-02;KEGG=Os06t0531600-02
Chr06	irgsp1_rep	five_prime_UTR	19839941	19840122	.	-	.	Parent=Os06t0531600-02
Chr06	irgsp1_rep	CDS	19839650	19839940	.	-	0	Parent=Os06t0531600-02
Chr06	irgsp1_rep	three_prime_UTR	19838860	19839649	.	-	.	Parent=Os06t0531600-02
Chr06	irgsp1_rep	mRNA	19855529	19856131	.	-	.	ID=Os06t0531751-00;Name=Os06t0531751-00;Locus_id=Os06g0531751;Note=Hypothetical conserved gene.;Transcript_evidence=CT835790 (DDBJ%2C Best hit);ORF_evidence=Q5Z786 (UniProt);TENOR=Os06t0531751-00;KEGG=Os06t0531751-00
Chr06	irgsp1_rep	five_prime_UTR	19855901	19856131	.	-	.	Parent=Os06t0531751-00
Chr06	irgsp1_rep	CDS	19855760	19855900	.	-	0	Parent=Os06t0531751-00
Chr06	irgsp1_rep	three_prime_UTR	19855529	19855759	.	-	.	Parent=Os06t0531751-00
Chr06	irgsp1_rep	mRNA	19866072	19870004	.	-	.	ID=Os06t0531900-01;Name=Os06t0531900-01;Locus_id=Os06g0531900;CGSNL Gene Symbol=GELP85;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 85;Oryzabase Gene Symbol Synonym(s)=OsGELP85;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 85;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK067909 (DDBJ%2C Best hit),AK061422 (DDBJ%2C Best hit);ORF_evidence=NP_001150078.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=J013123P18,006-306-F12;Oryzabase=11035;Expression=AK067909;TENOR=Os06t0531900-01;KEGG=Os06t0531900-01
Chr06	irgsp1_rep	five_prime_UTR	19869944	19870004	.	-	.	Parent=Os06t0531900-01
Chr06	irgsp1_rep	CDS	19869616	19869943	.	-	0	Parent=Os06t0531900-01
Chr06	irgsp1_rep	CDS	19868745	19868960	.	-	2	Parent=Os06t0531900-01
Chr06	irgsp1_rep	CDS	19868478	19868626	.	-	2	Parent=Os06t0531900-01
Chr06	irgsp1_rep	CDS	19866809	19867085	.	-	0	Parent=Os06t0531900-01
Chr06	irgsp1_rep	CDS	19866399	19866616	.	-	2	Parent=Os06t0531900-01
Chr06	irgsp1_rep	three_prime_UTR	19866072	19866398	.	-	.	Parent=Os06t0531900-01
Chr06	irgsp1_rep	mRNA	19866405	19869942	.	+	.	ID=Os06t0532101-00;Name=Os06t0532101-00;Locus_id=Os06g0532101;Note=Hypothetical protein.;Transcript_evidence=tplb0048c08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0532101-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	19866405	19866603	.	+	.	Parent=Os06t0532101-00
Chr06	irgsp1_rep	five_prime_UTR	19866799	19867058	.	+	.	Parent=Os06t0532101-00
Chr06	irgsp1_rep	five_prime_UTR	19868458	19868615	.	+	.	Parent=Os06t0532101-00
Chr06	irgsp1_rep	five_prime_UTR	19868735	19868773	.	+	.	Parent=Os06t0532101-00
Chr06	irgsp1_rep	CDS	19868774	19868952	.	+	0	Parent=Os06t0532101-00
Chr06	irgsp1_rep	CDS	19869609	19869705	.	+	1	Parent=Os06t0532101-00
Chr06	irgsp1_rep	three_prime_UTR	19869706	19869942	.	+	.	Parent=Os06t0532101-00
Chr06	irgsp1_rep	mRNA	19875923	19878818	.	+	.	ID=Os06t0532301-01;Name=Os06t0532301-01;Locus_id=Os06g0532301;Note=Conserved hypothetical protein.;Transcript_evidence=AK288266 (DDBJ%2C Best hit);ORF_evidence=Q69RN8 (UniProt);NIAS_FLcDNA=J090016H18;TENOR=Os06t0532301-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	19875923	19878617	.	+	.	Parent=Os06t0532301-01
Chr06	irgsp1_rep	CDS	19878618	19878800	.	+	0	Parent=Os06t0532301-01
Chr06	irgsp1_rep	three_prime_UTR	19878801	19878818	.	+	.	Parent=Os06t0532301-01
Chr06	irgsp1_rep	mRNA	19904206	19904580	.	-	.	ID=Os06t0532500-01;Name=Os06t0532500-01;Locus_id=Os06g0532500;RAP-DB Gene Symbol Synonym(s)=FCP2;RAP-DB Gene Name Synonym(s)=FON2-LIKE CLE PROTEIN2;Oryzabase Gene Symbol Synonym(s)=FCP2;Oryzabase Gene Name Synonym(s)=FON2-LIKE CLE PROTEIN2;Note=Protein with similar CLE domain%2C Meristem maintenance;Transcript_evidence=AB354585;ORF_evidence=B3XYC4;Manual Curation=April 9%2C 2014;Literature_PMID=23371950,18676878;Oryzabase=12272;TENOR=Os06t0532500-00
Chr06	irgsp1_rep	CDS	19904206	19904580	.	-	0	Parent=Os06t0532500-01
Chr06	irgsp1_rep	mRNA	19950545	19950766	.	+	.	ID=Os06t0533700-00;Name=Os06t0533700-00;Locus_id=Os06g0533700;Note=Hypothetical conserved gene.;Transcript_evidence=AB332078 (DDBJ%2C Best hit);ORF_evidence=Q5Z731 (UniProt);TENOR=Os06t0533700-00;KEGG=Os06t0533700-00
Chr06	irgsp1_rep	CDS	19950545	19950766	.	+	0	Parent=Os06t0533700-00
Chr06	irgsp1_rep	mRNA	19972817	19973562	.	-	.	ID=Os06t0534200-01;Name=Os06t0534200-01;Locus_id=Os06g0534200;Note=Conserved hypothetical protein.;Transcript_evidence=AK243535 (DDBJ%2C Best hit);ORF_evidence=NP_001174832.1 (RefSeq);NIAS_FLcDNA=J100077M13;TENOR=Os06t0534200-01;KEGG=Os06t0534200-01
Chr06	irgsp1_rep	five_prime_UTR	19973512	19973562	.	-	.	Parent=Os06t0534200-01
Chr06	irgsp1_rep	CDS	19973233	19973511	.	-	0	Parent=Os06t0534200-01
Chr06	irgsp1_rep	three_prime_UTR	19972817	19973232	.	-	.	Parent=Os06t0534200-01
Chr06	irgsp1_rep	mRNA	19999929	20000815	.	+	.	ID=Os06t0534500-00;Name=Os06t0534500-00;Locus_id=Os06g0534500;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=BT055245 (DDBJ);ORF_evidence=Q5Z5G3 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);TENOR=Os06t0534500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	19999929	20000026	.	+	.	Parent=Os06t0534500-00
Chr06	irgsp1_rep	CDS	20000027	20000815	.	+	0	Parent=Os06t0534500-00
Chr06	irgsp1_rep	mRNA	20010528	20012036	.	+	.	ID=Os06t0534800-01;Name=Os06t0534800-01;Locus_id=Os06g0534800;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=AK120650 (DDBJ%2C Best hit);ORF_evidence=Q5Z5G0 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J013156M02;TENOR=Os06t0534800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	20010528	20010752	.	+	.	Parent=Os06t0534800-01
Chr06	irgsp1_rep	CDS	20010753	20011799	.	+	0	Parent=Os06t0534800-01
Chr06	irgsp1_rep	three_prime_UTR	20011800	20012036	.	+	.	Parent=Os06t0534800-01
Chr06	irgsp1_rep	mRNA	20010570	20012023	.	+	.	ID=Os06t0534800-02;Name=Os06t0534800-02;Locus_id=Os06g0534800;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=AK108739 (DDBJ%2C Best hit);ORF_evidence=Q5Z5G0 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=002-150-E02;TENOR=Os06t0534800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	20010570	20010752	.	+	.	Parent=Os06t0534800-02
Chr06	irgsp1_rep	CDS	20010753	20011799	.	+	0	Parent=Os06t0534800-02
Chr06	irgsp1_rep	three_prime_UTR	20011800	20012023	.	+	.	Parent=Os06t0534800-02
Chr06	irgsp1_rep	mRNA	20019320	20019976	.	+	.	ID=Os06t0534900-00;Name=Os06t0534900-00;Locus_id=Os06g0534900;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A3BCE6 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);TENOR=Os06t0534900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	20019320	20019976	.	+	0	Parent=Os06t0534900-00
Chr06	irgsp1_rep	mRNA	20020490	20021315	.	+	.	ID=Os06t0534950-00;Name=Os06t0534950-00;Locus_id=Os06g0534950;Note=Similar to zinc finger%2C C3HC4 type family protein.;Transcript_evidence=CT836212 (DDBJ%2C Best hit);ORF_evidence=NP_001149984.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os06t0534950-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	20020490	20020563	.	+	.	Parent=Os06t0534950-00
Chr06	irgsp1_rep	CDS	20020564	20021121	.	+	0	Parent=Os06t0534950-00
Chr06	irgsp1_rep	three_prime_UTR	20021122	20021315	.	+	.	Parent=Os06t0534950-00
Chr06	irgsp1_rep	mRNA	20025960	20031157	.	+	.	ID=Os06t0535100-00;Name=Os06t0535100-00;Locus_id=Os06g0535100;CGSNL Gene Symbol=NRFG5;CGSNL Gene Name=NEO-TETRAPLOID RICE FERTILITY RELATED GENE 5;Oryzabase Gene Symbol Synonym(s)=OsRH51%2C RH51%2C OsNRFG5;Oryzabase Gene Name Synonym(s)=RNA helicase 51%2C neo-tetraploid rice fertility related gene 5;Note=Similar to predicted protein.;Transcript_evidence=AK368023 (DDBJ);ORF_evidence=XP_003081470.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=RNA helicase%2C ATP-dependent%2C DEAD-box%2C conserved site (IPR000629),Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);Oryzabase=19157;TENOR=Os06t0535100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	20025960	20025971	.	+	.	Parent=Os06t0535100-00
Chr06	irgsp1_rep	CDS	20025972	20026304	.	+	0	Parent=Os06t0535100-00
Chr06	irgsp1_rep	CDS	20026436	20026621	.	+	0	Parent=Os06t0535100-00
Chr06	irgsp1_rep	CDS	20027052	20027237	.	+	0	Parent=Os06t0535100-00
Chr06	irgsp1_rep	CDS	20028660	20028746	.	+	0	Parent=Os06t0535100-00
Chr06	irgsp1_rep	CDS	20028865	20028906	.	+	0	Parent=Os06t0535100-00
Chr06	irgsp1_rep	CDS	20028984	20029073	.	+	0	Parent=Os06t0535100-00
Chr06	irgsp1_rep	CDS	20029219	20029524	.	+	0	Parent=Os06t0535100-00
Chr06	irgsp1_rep	CDS	20029617	20029655	.	+	0	Parent=Os06t0535100-00
Chr06	irgsp1_rep	CDS	20029734	20029838	.	+	0	Parent=Os06t0535100-00
Chr06	irgsp1_rep	CDS	20030283	20030351	.	+	0	Parent=Os06t0535100-00
Chr06	irgsp1_rep	CDS	20030431	20030556	.	+	0	Parent=Os06t0535100-00
Chr06	irgsp1_rep	CDS	20030976	20031155	.	+	0	Parent=Os06t0535100-00
Chr06	irgsp1_rep	three_prime_UTR	20031156	20031157	.	+	.	Parent=Os06t0535100-00
Chr06	irgsp1_rep	mRNA	20033286	20034343	.	-	.	ID=Os06t0535200-01;Name=Os06t0535200-01;Locus_id=Os06g0535200;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK109943 (DDBJ%2C Best hit);ORF_evidence=B8B3C2 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=002-154-F07;Expression=AK109943;TENOR=Os06t0535200-01;KEGG=Os06t0535200-01
Chr06	irgsp1_rep	five_prime_UTR	20034148	20034343	.	-	.	Parent=Os06t0535200-01
Chr06	irgsp1_rep	CDS	20033476	20034147	.	-	0	Parent=Os06t0535200-01
Chr06	irgsp1_rep	three_prime_UTR	20033286	20033475	.	-	.	Parent=Os06t0535200-01
Chr06	irgsp1_rep	mRNA	20035104	20042684	.	-	.	ID=Os06t0535300-01;Name=Os06t0535300-01;Locus_id=Os06g0535300;Oryzabase Gene Symbol Synonym(s)=OsDjC55;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C55;Note=Similar to AFL190Cp.;Transcript_evidence=AK070898 (DDBJ%2C Best hit);ORF_evidence=B8B3C3 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Domain of unknown function DUF3444 (IPR024593);NIAS_FLcDNA=J023071K08;Oryzabase=12212;Expression=AK070898;TENOR=Os06t0535300-01;KEGG=Os06t0535300-01
Chr06	irgsp1_rep	five_prime_UTR	20042322	20042684	.	-	.	Parent=Os06t0535300-01
Chr06	irgsp1_rep	five_prime_UTR	20040733	20040826	.	-	.	Parent=Os06t0535300-01
Chr06	irgsp1_rep	five_prime_UTR	20039717	20039809	.	-	.	Parent=Os06t0535300-01
Chr06	irgsp1_rep	five_prime_UTR	20038626	20038818	.	-	.	Parent=Os06t0535300-01
Chr06	irgsp1_rep	CDS	20035569	20038625	.	-	0	Parent=Os06t0535300-01
Chr06	irgsp1_rep	three_prime_UTR	20035104	20035568	.	-	.	Parent=Os06t0535300-01
Chr06	irgsp1_rep	mRNA	20035157	20036674	.	-	.	ID=Os06t0535300-02;Name=Os06t0535300-02;Locus_id=Os06g0535300;Oryzabase Gene Symbol Synonym(s)=OsDjC55;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C55;Note=Hypothetical conserved gene.;Transcript_evidence=AK059642 (DDBJ%2C Best hit);ORF_evidence=B8B3C3 (UniProt);InterPro=Domain of unknown function DUF3444 (IPR024593);NIAS_FLcDNA=001-031-B09;Oryzabase=12212;Expression=AK059642;TENOR=Os06t0535300-02;KEGG=Os06t0535300-02
Chr06	irgsp1_rep	five_prime_UTR	20036673	20036674	.	-	.	Parent=Os06t0535300-02
Chr06	irgsp1_rep	CDS	20035569	20036672	.	-	0	Parent=Os06t0535300-02
Chr06	irgsp1_rep	three_prime_UTR	20035157	20035568	.	-	.	Parent=Os06t0535300-02
Chr06	irgsp1_rep	mRNA	20047751	20049331	.	+	.	ID=Os06t0535333-00;Name=Os06t0535333-00;Locus_id=Os06g0535333;Note=Similar to predicted protein.;Transcript_evidence=tplb0024b19 (Wheat FLcDNA);ORF_evidence=B8B665 (UniProt);TENOR=Os06t0535333-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	20047751	20047840	.	+	.	Parent=Os06t0535333-00
Chr06	irgsp1_rep	five_prime_UTR	20048211	20048246	.	+	.	Parent=Os06t0535333-00
Chr06	irgsp1_rep	CDS	20048247	20048426	.	+	0	Parent=Os06t0535333-00
Chr06	irgsp1_rep	three_prime_UTR	20048427	20048481	.	+	.	Parent=Os06t0535333-00
Chr06	irgsp1_rep	three_prime_UTR	20049199	20049331	.	+	.	Parent=Os06t0535333-00
Chr06	irgsp1_rep	mRNA	20051303	20052370	.	+	.	ID=Os06t0535400-01;Name=Os06t0535400-01;Locus_id=Os06g0535400;Note=Similar to E3 ubiquitin ligase EL5 (EC 6.3.2.-).;Transcript_evidence=AK066960 (DDBJ%2C Best hit);ORF_evidence=Q5Z5F2 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J013091H18;Expression=AK066960;TENOR=Os06t0535400-01;KEGG=Os06t0535400-01
Chr06	irgsp1_rep	five_prime_UTR	20051303	20051393	.	+	.	Parent=Os06t0535400-01
Chr06	irgsp1_rep	CDS	20051394	20052149	.	+	0	Parent=Os06t0535400-01
Chr06	irgsp1_rep	three_prime_UTR	20052150	20052370	.	+	.	Parent=Os06t0535400-01
Chr06	irgsp1_rep	mRNA	20064591	20065169	.	+	.	ID=Os06t0535900-01;Name=Os06t0535900-01;Locus_id=Os06g0535900;CGSNL Gene Symbol=AM29;CGSNL Gene Name=ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 29;Oryzabase Gene Symbol Synonym(s)=AM29;Note=Arbuscular mycorrhizal specific marker 29.;Transcript_evidence=EU974130 (DDBJ);ORF_evidence=Q5Z5E8 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);Oryzabase=8192;TENOR=Os06t0535900-01
Chr06	irgsp1_rep	CDS	20064591	20065169	.	+	0	Parent=Os06t0535900-01
Chr06	irgsp1_rep	mRNA	20087878	20089203	.	-	.	ID=Os06t0536100-00;Name=Os06t0536100-00;Locus_id=Os06g0536100;Note=Hypothetical conserved gene.;Transcript_evidence=CT836266 (DDBJ%2C Best hit);ORF_evidence=Q5Z5E5 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os06t0536100-00;KEGG=Os06t0536100-00
Chr06	irgsp1_rep	five_prime_UTR	20089143	20089203	.	-	.	Parent=Os06t0536100-00
Chr06	irgsp1_rep	CDS	20088570	20089142	.	-	0	Parent=Os06t0536100-00
Chr06	irgsp1_rep	three_prime_UTR	20087878	20088301	.	-	.	Parent=Os06t0536100-00
Chr06	irgsp1_rep	mRNA	20090511	20091051	.	+	.	ID=Os06t0536200-01;Name=Os06t0536200-01;Locus_id=Os06g0536200;Note=Hypothetical gene.;Transcript_evidence=AK111381 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-182-B07;Expression=AK111381;TENOR=Os06t0536200-01;KEGG=Os06t0536200-01
Chr06	irgsp1_rep	CDS	20090511	20090807	.	+	0	Parent=Os06t0536200-01
Chr06	irgsp1_rep	three_prime_UTR	20090808	20091051	.	+	.	Parent=Os06t0536200-01
Chr06	irgsp1_rep	mRNA	20093428	20094565	.	+	.	ID=Os06t0536333-00;Name=Os06t0536333-00;Locus_id=Os06g0536333;Note=Similar to Protein LRP16.;Transcript_evidence=ab initio prediction;ORF_evidence=B6SKT6 (UniProt);InterPro=Appr-1-p processing (IPR002589);TENOR=Os06t0536333-00
Chr06	irgsp1_rep	CDS	20093428	20093721	.	+	0	Parent=Os06t0536333-00
Chr06	irgsp1_rep	CDS	20093998	20094046	.	+	0	Parent=Os06t0536333-00
Chr06	irgsp1_rep	CDS	20094369	20094565	.	+	2	Parent=Os06t0536333-00
Chr06	irgsp1_rep	mRNA	20099870	20100496	.	+	.	ID=Os06t0536600-00;Name=Os06t0536600-00;Locus_id=Os06g0536600;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=BT086527 (DDBJ);ORF_evidence=B8B3C5 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os06t0536600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	20099870	20100496	.	+	0	Parent=Os06t0536600-00
Chr06	irgsp1_rep	mRNA	20108869	20109237	.	-	.	ID=Os06t0536800-00;Name=Os06t0536800-00;Locus_id=Os06g0536800;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os06t0536800-00
Chr06	irgsp1_rep	CDS	20108869	20109237	.	-	0	Parent=Os06t0536800-00
Chr06	irgsp1_rep	mRNA	20106673	20106935	.	-	.	ID=Os06t0536850-01;Name=Os06t0536850-01;Locus_id=Os06g0536850;Note=Non-protein coding transcript.;Transcript_evidence=AK242532 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080315O03;TENOR=Os06t0536850-01
Chr06	irgsp1_rep	exon	20106673	20106935	.	-	.	Parent=Os06t0536850-01
Chr06	irgsp1_rep	mRNA	20127919	20128306	.	-	.	ID=Os06t0537201-01;Name=Os06t0537201-01;Locus_id=Os06g0537201;Note=Non-protein coding transcript.;Transcript_evidence=AK242685 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090033I16;TENOR=Os06t0537201-01
Chr06	irgsp1_rep	exon	20127919	20128306	.	-	.	Parent=Os06t0537201-01
Chr06	irgsp1_rep	mRNA	20131512	20132168	.	+	.	ID=Os06t0537300-00;Name=Os06t0537300-00;Locus_id=Os06g0537300;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=AK366423 (DDBJ);ORF_evidence=A3BCH5 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os06t0537300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	20131512	20132168	.	+	0	Parent=Os06t0537300-00
Chr06	irgsp1_rep	mRNA	20137950	20138708	.	+	.	ID=Os06t0537500-00;Name=Os06t0537500-00;Locus_id=Os06g0537500;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=EU976563 (DDBJ);ORF_evidence=Q5Z6U9 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);TENOR=Os06t0537500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	20137950	20138690	.	+	0	Parent=Os06t0537500-00
Chr06	irgsp1_rep	three_prime_UTR	20138691	20138708	.	+	.	Parent=Os06t0537500-00
Chr06	irgsp1_rep	mRNA	20143945	20144666	.	+	.	ID=Os06t0537600-01;Name=Os06t0537600-01;Locus_id=Os06g0537600;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK063014 (DDBJ%2C Best hit);ORF_evidence=B6U850 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=001-110-A08;Expression=AK063014;TENOR=Os06t0537600-01;KEGG=Os06t0537600-01
Chr06	irgsp1_rep	five_prime_UTR	20143945	20144008	.	+	.	Parent=Os06t0537600-01
Chr06	irgsp1_rep	CDS	20144009	20144461	.	+	0	Parent=Os06t0537600-01
Chr06	irgsp1_rep	three_prime_UTR	20144462	20144666	.	+	.	Parent=Os06t0537600-01
Chr06	irgsp1_rep	mRNA	20145118	20148062	.	-	.	ID=Os06t0537700-01;Name=Os06t0537700-01;Locus_id=Os06g0537700;Note=X8 domain containing protein.;Transcript_evidence=AK109530 (DDBJ%2C Best hit);ORF_evidence=B4FGE4 (UniProt);InterPro=X8 (IPR012946);NIAS_FLcDNA=002-118-B05;Expression=AK109530;TENOR=Os06t0537700-01;KEGG=Os06t0537700-01
Chr06	irgsp1_rep	five_prime_UTR	20147995	20148062	.	-	.	Parent=Os06t0537700-01
Chr06	irgsp1_rep	CDS	20147628	20147994	.	-	0	Parent=Os06t0537700-01
Chr06	irgsp1_rep	CDS	20147495	20147522	.	-	2	Parent=Os06t0537700-01
Chr06	irgsp1_rep	CDS	20145293	20145458	.	-	1	Parent=Os06t0537700-01
Chr06	irgsp1_rep	three_prime_UTR	20145118	20145292	.	-	.	Parent=Os06t0537700-01
Chr06	irgsp1_rep	mRNA	20158669	20165601	.	+	.	ID=Os06t0538000-01;Name=Os06t0538000-01;Locus_id=Os06g0538000;Note=Similar to T-complex protein 1%2C gamma subunit (TCP-1-gamma) (CCT-gamma) (Matricin) (mTRiC-P5).;Transcript_evidence=AK069949 (DDBJ%2C Best hit);ORF_evidence=B6UCD0 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: cellular protein metabolic process (GO:0044267),Molecular Function: ATP binding (GO:0005524),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Chaperonin TCP-1%2C conserved site (IPR002194),Chaperonin Cpn60/TCP-1 (IPR002423),T-complex protein 1%2C gamma subunit (IPR012719),Chaperone%2C tailless complex polypeptide 1 (IPR017998);NIAS_FLcDNA=J023034K12;Expression=AK069949;TENOR=Os06t0538000-01;KEGG=Os06t0538000-01
Chr06	irgsp1_rep	five_prime_UTR	20158669	20158764	.	+	.	Parent=Os06t0538000-01
Chr06	irgsp1_rep	CDS	20158765	20158795	.	+	0	Parent=Os06t0538000-01
Chr06	irgsp1_rep	CDS	20159128	20159189	.	+	2	Parent=Os06t0538000-01
Chr06	irgsp1_rep	CDS	20159561	20159633	.	+	0	Parent=Os06t0538000-01
Chr06	irgsp1_rep	CDS	20161112	20161179	.	+	2	Parent=Os06t0538000-01
Chr06	irgsp1_rep	CDS	20161316	20161385	.	+	0	Parent=Os06t0538000-01
Chr06	irgsp1_rep	CDS	20161728	20161796	.	+	2	Parent=Os06t0538000-01
Chr06	irgsp1_rep	CDS	20161885	20161956	.	+	2	Parent=Os06t0538000-01
Chr06	irgsp1_rep	CDS	20162067	20162140	.	+	2	Parent=Os06t0538000-01
Chr06	irgsp1_rep	CDS	20162240	20162517	.	+	0	Parent=Os06t0538000-01
Chr06	irgsp1_rep	CDS	20162624	20163008	.	+	1	Parent=Os06t0538000-01
Chr06	irgsp1_rep	CDS	20163088	20163213	.	+	0	Parent=Os06t0538000-01
Chr06	irgsp1_rep	CDS	20163403	20163507	.	+	0	Parent=Os06t0538000-01
Chr06	irgsp1_rep	CDS	20164860	20164934	.	+	0	Parent=Os06t0538000-01
Chr06	irgsp1_rep	CDS	20165022	20165210	.	+	0	Parent=Os06t0538000-01
Chr06	irgsp1_rep	three_prime_UTR	20165211	20165601	.	+	.	Parent=Os06t0538000-01
Chr06	irgsp1_rep	mRNA	20166610	20166996	.	+	.	ID=Os06t0538100-00;Name=Os06t0538100-00;Locus_id=Os06g0538100;Note=Conserved hypothetical protein.;Transcript_evidence=DQ244156 (DDBJ);ORF_evidence=Q9SPN4 (UniProt);TENOR=Os06t0538100-00
Chr06	irgsp1_rep	CDS	20166610	20166996	.	+	0	Parent=Os06t0538100-00
Chr06	irgsp1_rep	mRNA	20169381	20177210	.	+	.	ID=Os06t0538200-01;Name=Os06t0538200-01;Locus_id=Os06g0538200;Note=Conserved hypothetical protein.;Transcript_evidence=AK243158 (DDBJ%2C Best hit);ORF_evidence=NP_001057797.2 (RefSeq);NIAS_FLcDNA=J100033P22;TENOR=Os06t0538200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	20169381	20169437	.	+	.	Parent=Os06t0538200-01
Chr06	irgsp1_rep	CDS	20169438	20172311	.	+	0	Parent=Os06t0538200-01
Chr06	irgsp1_rep	three_prime_UTR	20172312	20172336	.	+	.	Parent=Os06t0538200-01
Chr06	irgsp1_rep	three_prime_UTR	20176867	20177210	.	+	.	Parent=Os06t0538200-01
Chr06	irgsp1_rep	mRNA	20178124	20179043	.	-	.	ID=Os06t0538400-01;Name=Os06t0538400-01;Locus_id=Os06g0538400;Note=Conserved hypothetical protein.;Transcript_evidence=AK108390 (DDBJ%2C Best hit);ORF_evidence=A2YDT2 (UniProt);NIAS_FLcDNA=002-142-F04;Expression=AK108390;TENOR=Os06t0538400-01;KEGG=Os06t0538400-01
Chr06	irgsp1_rep	five_prime_UTR	20178999	20179043	.	-	.	Parent=Os06t0538400-01
Chr06	irgsp1_rep	CDS	20178375	20178998	.	-	0	Parent=Os06t0538400-01
Chr06	irgsp1_rep	three_prime_UTR	20178124	20178374	.	-	.	Parent=Os06t0538400-01
Chr06	irgsp1_rep	mRNA	20223916	20224692	.	-	.	ID=Os06t0538900-01;Name=Os06t0538900-01;Locus_id=Os06g0538900;Note=Protein of unknown function DUF538 domain containing protein.;Transcript_evidence=AK122046 (DDBJ%2C Best hit),AK063825 (DDBJ%2C Best hit);ORF_evidence=GeneMark;InterPro=Protein of unknown function DUF538 (IPR007493);NIAS_FLcDNA=J033114A14,001-122-A08;TENOR=Os06t0538900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	20224120	20224692	.	-	0	Parent=Os06t0538900-01
Chr06	irgsp1_rep	three_prime_UTR	20223916	20224119	.	-	.	Parent=Os06t0538900-01
Chr06	irgsp1_rep	mRNA	20230756	20232066	.	+	.	ID=Os06t0539066-01;Name=Os06t0539066-01;Locus_id=Os06g0539066;Note=Conserved hypothetical protein.;Transcript_evidence=AK241811 (DDBJ%2C Best hit);ORF_evidence=NP_001174836.1 (RefSeq);NIAS_FLcDNA=J065210J16;TENOR=Os06t0539066-01;KEGG=Os06t0539066-01
Chr06	irgsp1_rep	five_prime_UTR	20230756	20231742	.	+	.	Parent=Os06t0539066-01
Chr06	irgsp1_rep	CDS	20231743	20232036	.	+	0	Parent=Os06t0539066-01
Chr06	irgsp1_rep	three_prime_UTR	20232037	20232066	.	+	.	Parent=Os06t0539066-01
Chr06	irgsp1_rep	mRNA	20231417	20231674	.	-	.	ID=Os06t0539100-00;Name=Os06t0539100-00;Locus_id=Os06g0539100;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001174835.1 (RefSeq);TENOR=Os06t0539100-00;KEGG=Os06t0539100-00
Chr06	irgsp1_rep	CDS	20231417	20231674	.	-	0	Parent=Os06t0539100-00
Chr06	irgsp1_rep	mRNA	20241554	20245065	.	+	.	ID=Os06t0539250-01;Name=Os06t0539250-01;Locus_id=Os06g0539250;Note=Similar to SWIM zinc finger family protein.;Transcript_evidence=AK288687 (DDBJ%2C Best hit);ORF_evidence=Q10MM8 (UniProt);NIAS_FLcDNA=J090060E09;TENOR=Os06t0539250-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	20241554	20243000	.	+	.	Parent=Os06t0539250-01
Chr06	irgsp1_rep	CDS	20243001	20243207	.	+	0	Parent=Os06t0539250-01
Chr06	irgsp1_rep	three_prime_UTR	20243208	20245065	.	+	.	Parent=Os06t0539250-01
Chr06	irgsp1_rep	mRNA	20251679	20253928	.	+	.	ID=Os06t0539400-01;Name=Os06t0539400-01;Locus_id=Os06g0539400;Oryzabase Gene Symbol Synonym(s)=OsCAT6;Oryzabase Gene Name Synonym(s)=cationic amino acid transporter 6;Note=Amino acid/polyamine transporter I family protein.;Transcript_evidence=AK063382 (DDBJ%2C Best hit);ORF_evidence=NP_173155.1 (RefSeq);GO=Biological Process: amino acid transmembrane transport (GO:0003333),Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: amino acid transmembrane transporter activity (GO:0015171);InterPro=Amino acid/polyamine transporter I (IPR002293),Amino acid permease domain (IPR004841),Cationic amino acid transporter (IPR015606);NIAS_FLcDNA=001-114-G03;Oryzabase=18540;Expression=AK063382;TENOR=Os06t0539400-01;KEGG=Os06t0539400-01
Chr06	irgsp1_rep	five_prime_UTR	20251679	20251821	.	+	.	Parent=Os06t0539400-01
Chr06	irgsp1_rep	CDS	20251822	20253612	.	+	0	Parent=Os06t0539400-01
Chr06	irgsp1_rep	three_prime_UTR	20253613	20253928	.	+	.	Parent=Os06t0539400-01
Chr06	irgsp1_rep	mRNA	20257250	20257626	.	-	.	ID=Os06t0539500-00;Name=Os06t0539500-00;Locus_id=Os06g0539500;Oryzabase Gene Symbol Synonym(s)=OsLTP1.6%2C OsLtpI.6;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein 1.6%2C lipid transfer protein 1.6%2C type 1 non-specific lipid transfer protein 6;Note=Similar to Non-specific lipid-transfer protein.;Transcript_evidence=BT066221 (DDBJ);ORF_evidence=B9FTM6 (UniProt);GO=Biological Process: lipid transport (GO:0006869),Molecular Function: lipid binding (GO:0008289);InterPro=Plant lipid transfer protein/Par allergen (IPR000528),Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);Oryzabase=13515;TENOR=Os06t0539500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	20257255	20257626	.	-	0	Parent=Os06t0539500-00
Chr06	irgsp1_rep	three_prime_UTR	20257250	20257254	.	-	.	Parent=Os06t0539500-00
Chr06	irgsp1_rep	mRNA	20265689	20266464	.	+	.	ID=Os06t0539700-01;Name=Os06t0539700-01;Locus_id=Os06g0539700;Note=Conserved hypothetical protein.;Transcript_evidence=AK064662 (DDBJ%2C Best hit);ORF_evidence=Q5Z709 (UniProt);NIAS_FLcDNA=002-115-A09;Expression=AK064662;TENOR=Os06t0539700-01;KEGG=Os06t0539700-01
Chr06	irgsp1_rep	five_prime_UTR	20265689	20265819	.	+	.	Parent=Os06t0539700-01
Chr06	irgsp1_rep	CDS	20265820	20266221	.	+	0	Parent=Os06t0539700-01
Chr06	irgsp1_rep	three_prime_UTR	20266222	20266464	.	+	.	Parent=Os06t0539700-01
Chr06	irgsp1_rep	mRNA	20270644	20271249	.	+	.	ID=Os06t0539801-00;Name=Os06t0539801-00;Locus_id=Os06g0539801;Note=Conserved hypothetical protein.;Transcript_evidence=BT064098 (DDBJ);ORF_evidence=A3BCH5 (UniProt);TENOR=Os06t0539801-00
Chr06	irgsp1_rep	CDS	20270644	20271249	.	+	0	Parent=Os06t0539801-00
Chr06	irgsp1_rep	mRNA	20280665	20282939	.	+	.	ID=Os06t0539975-00;Name=Os06t0539975-00;Locus_id=Os06g0539975;Note=Conserved hypothetical protein.;Transcript_evidence=BT064098 (DDBJ);ORF_evidence=A3BCH5 (UniProt);TENOR=Os06t0539975-00
Chr06	irgsp1_rep	CDS	20280665	20281103	.	+	0	Parent=Os06t0539975-00
Chr06	irgsp1_rep	CDS	20282440	20282939	.	+	2	Parent=Os06t0539975-00
Chr06	irgsp1_rep	mRNA	20280677	20281207	.	-	.	ID=Os06t0540050-00;Name=Os06t0540050-00;Locus_id=Os06g0540050;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FTM8 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);TENOR=Os06t0540050-00;KEGG=Os06t0540050-00
Chr06	irgsp1_rep	CDS	20280677	20281207	.	-	0	Parent=Os06t0540050-00
Chr06	irgsp1_rep	mRNA	20282472	20287273	.	-	.	ID=Os06t0540200-00;Name=Os06t0540200-00;Locus_id=Os06g0540200;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=BT038216 (DDBJ);ORF_evidence=Q5Z5D9 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os06t0540200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	20286801	20287273	.	-	0	Parent=Os06t0540200-00
Chr06	irgsp1_rep	CDS	20282507	20282975	.	-	1	Parent=Os06t0540200-00
Chr06	irgsp1_rep	three_prime_UTR	20282472	20282506	.	-	.	Parent=Os06t0540200-00
Chr06	irgsp1_rep	mRNA	20323335	20325370	.	+	.	ID=Os06t0541132-00;Name=Os06t0541132-00;Locus_id=Os06g0541132;Note=Hypothetical conserved gene.;Transcript_evidence=AK111390 (DDBJ%2C Secondary hit);ORF_evidence=B8BGA9 (UniProt);Expression=AK111390;TENOR=Os06t0541132-00;KEGG=Os06t0541132-00
Chr06	irgsp1_rep	five_prime_UTR	20323335	20323533	.	+	.	Parent=Os06t0541132-00
Chr06	irgsp1_rep	five_prime_UTR	20323637	20323691	.	+	.	Parent=Os06t0541132-00
Chr06	irgsp1_rep	CDS	20323692	20323843	.	+	0	Parent=Os06t0541132-00
Chr06	irgsp1_rep	CDS	20324009	20324063	.	+	1	Parent=Os06t0541132-00
Chr06	irgsp1_rep	three_prime_UTR	20324064	20324192	.	+	.	Parent=Os06t0541132-00
Chr06	irgsp1_rep	three_prime_UTR	20324985	20325198	.	+	.	Parent=Os06t0541132-00
Chr06	irgsp1_rep	three_prime_UTR	20325211	20325230	.	+	.	Parent=Os06t0541132-00
Chr06	irgsp1_rep	three_prime_UTR	20325267	20325370	.	+	.	Parent=Os06t0541132-00
Chr06	irgsp1_rep	mRNA	20330315	20338404	.	-	.	ID=Os06t0541600-00;Name=Os06t0541600-00;Locus_id=Os06g0541600;CGSNL Gene Symbol=RLCK206;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 206;Oryzabase Gene Symbol Synonym(s)=OsRLCK206;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 206;Note=Conserved hypothetical protein.;Transcript_evidence=AK356929 (DDBJ);ORF_evidence=Q5Z6Z4 (UniProt);Oryzabase=18903;TENOR=Os06t0541600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	20337995	20338404	.	-	0	Parent=Os06t0541600-00
Chr06	irgsp1_rep	CDS	20335941	20336010	.	-	1	Parent=Os06t0541600-00
Chr06	irgsp1_rep	three_prime_UTR	20335783	20335940	.	-	.	Parent=Os06t0541600-00
Chr06	irgsp1_rep	three_prime_UTR	20333393	20333514	.	-	.	Parent=Os06t0541600-00
Chr06	irgsp1_rep	three_prime_UTR	20330845	20331006	.	-	.	Parent=Os06t0541600-00
Chr06	irgsp1_rep	three_prime_UTR	20330315	20330460	.	-	.	Parent=Os06t0541600-00
Chr06	irgsp1_rep	mRNA	20362745	20365798	.	+	.	ID=Os06t0542000-00;Name=Os06t0542000-00;Locus_id=Os06g0542000;Note=Conserved hypothetical protein.;Transcript_evidence=AK374182 (DDBJ);ORF_evidence=Q5Z6Y6 (UniProt);TENOR=Os06t0542000-00
Chr06	irgsp1_rep	five_prime_UTR	20362745	20362963	.	+	.	Parent=Os06t0542000-00
Chr06	irgsp1_rep	five_prime_UTR	20364466	20365090	.	+	.	Parent=Os06t0542000-00
Chr06	irgsp1_rep	CDS	20365091	20365149	.	+	0	Parent=Os06t0542000-00
Chr06	irgsp1_rep	CDS	20365279	20365450	.	+	1	Parent=Os06t0542000-00
Chr06	irgsp1_rep	three_prime_UTR	20365451	20365798	.	+	.	Parent=Os06t0542000-00
Chr06	irgsp1_rep	mRNA	20374175	20374723	.	+	.	ID=Os06t0542100-01;Name=Os06t0542100-01;Locus_id=Os06g0542100;Note=Conserved hypothetical protein.;Transcript_evidence=AK111086 (DDBJ%2C Best hit);ORF_evidence=B9FTN1 (UniProt);NIAS_FLcDNA=002-175-F09;Expression=AK111086;TENOR=Os06t0542100-01;KEGG=Os06t0542100-01
Chr06	irgsp1_rep	five_prime_UTR	20374175	20374175	.	+	.	Parent=Os06t0542100-01
Chr06	irgsp1_rep	CDS	20374176	20374532	.	+	0	Parent=Os06t0542100-01
Chr06	irgsp1_rep	three_prime_UTR	20374533	20374723	.	+	.	Parent=Os06t0542100-01
Chr06	irgsp1_rep	mRNA	20375011	20381325	.	-	.	ID=Os06t0542150-00;Name=Os06t0542150-00;Locus_id=Os06g0542150;Note=Non-protein coding transcript.;Transcript_evidence=BT016972 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0542150-00
Chr06	irgsp1_rep	exon	20380856	20381325	.	-	.	Parent=Os06t0542150-00
Chr06	irgsp1_rep	exon	20379441	20379547	.	-	.	Parent=Os06t0542150-00
Chr06	irgsp1_rep	exon	20377831	20377898	.	-	.	Parent=Os06t0542150-00
Chr06	irgsp1_rep	exon	20377580	20377689	.	-	.	Parent=Os06t0542150-00
Chr06	irgsp1_rep	exon	20377424	20377500	.	-	.	Parent=Os06t0542150-00
Chr06	irgsp1_rep	exon	20375011	20375135	.	-	.	Parent=Os06t0542150-00
Chr06	irgsp1_rep	mRNA	20400347	20403399	.	+	.	ID=Os06t0542200-01;Name=Os06t0542200-01;Locus_id=Os06g0542200;Note=Prephenate dehydrogenase domain containing protein.;Transcript_evidence=AK058589 (DDBJ%2C Best hit);ORF_evidence=XP_002331058.1 (RefSeq);GO=Biological Process: tyrosine biosynthetic process (GO:0006571),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: prephenate dehydrogenase (NADP+) activity (GO:0004665),Molecular Function: prephenate dehydrogenase activity (GO:0008977);InterPro=Prephenate dehydrogenase (IPR003099),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-017-G05;Expression=AK058589;TENOR=Os06t0542200-01;KEGG=Os06t0542200-01
Chr06	irgsp1_rep	five_prime_UTR	20400347	20400506	.	+	.	Parent=Os06t0542200-01
Chr06	irgsp1_rep	CDS	20400507	20401034	.	+	0	Parent=Os06t0542200-01
Chr06	irgsp1_rep	CDS	20401763	20401930	.	+	0	Parent=Os06t0542200-01
Chr06	irgsp1_rep	CDS	20402092	20402174	.	+	0	Parent=Os06t0542200-01
Chr06	irgsp1_rep	CDS	20402361	20402430	.	+	1	Parent=Os06t0542200-01
Chr06	irgsp1_rep	CDS	20402522	20402593	.	+	0	Parent=Os06t0542200-01
Chr06	irgsp1_rep	CDS	20402790	20402897	.	+	0	Parent=Os06t0542200-01
Chr06	irgsp1_rep	three_prime_UTR	20402898	20403399	.	+	.	Parent=Os06t0542200-01
Chr06	irgsp1_rep	mRNA	20404356	20405495	.	-	.	ID=Os06t0542300-01;Name=Os06t0542300-01;Locus_id=Os06g0542300;CGSNL Gene Symbol=HMP32;CGSNL Gene Name=HEAVY METAL-ASSOCIATED PROTEIN 32;Oryzabase Gene Symbol Synonym(s)=OsHMP32;Oryzabase Gene Name Synonym(s)=Heavy metal-associated protein 32;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK243289 (DDBJ%2C Best hit);ORF_evidence=NP_001057808.1 (RefSeq);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);NIAS_FLcDNA=J100052L04;Oryzabase=23551;TENOR=Os06t0542300-01;KEGG=Os06t0542300-01
Chr06	irgsp1_rep	five_prime_UTR	20405362	20405495	.	-	.	Parent=Os06t0542300-01
Chr06	irgsp1_rep	CDS	20405356	20405361	.	-	0	Parent=Os06t0542300-01
Chr06	irgsp1_rep	CDS	20405180	20405255	.	-	0	Parent=Os06t0542300-01
Chr06	irgsp1_rep	CDS	20404594	20405063	.	-	2	Parent=Os06t0542300-01
Chr06	irgsp1_rep	three_prime_UTR	20404356	20404593	.	-	.	Parent=Os06t0542300-01
Chr06	irgsp1_rep	mRNA	20404838	20408642	.	+	.	ID=Os06t0542350-01;Name=Os06t0542350-01;Locus_id=Os06g0542350;Note=Hypothetical gene.;Transcript_evidence=AK288540 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090045N03;TENOR=Os06t0542350-01;KEGG=Os06t0542350-01
Chr06	irgsp1_rep	five_prime_UTR	20404838	20407042	.	+	.	Parent=Os06t0542350-01
Chr06	irgsp1_rep	CDS	20407043	20407336	.	+	0	Parent=Os06t0542350-01
Chr06	irgsp1_rep	three_prime_UTR	20407337	20408642	.	+	.	Parent=Os06t0542350-01
Chr06	irgsp1_rep	mRNA	20418676	20419999	.	+	.	ID=Os06t0542600-01;Name=Os06t0542600-01;Locus_id=Os06g0542600;Oryzabase Gene Symbol Synonym(s)=OsFbox312%2C Os_F0546;Oryzabase Gene Name Synonym(s)=F-box protein 312;Note=Protein of unknown function DUF295 family protein.;Transcript_evidence=AK242019 (DDBJ%2C Best hit);ORF_evidence=NP_001174842.1 (RefSeq);InterPro=Protein of unknown function DUF295 (IPR005174);NIAS_FLcDNA=J075111K18;Oryzabase=17091;TENOR=Os06t0542600-01;KEGG=Os06t0542600-01
Chr06	irgsp1_rep	five_prime_UTR	20418676	20419262	.	+	.	Parent=Os06t0542600-01
Chr06	irgsp1_rep	CDS	20419263	20419952	.	+	0	Parent=Os06t0542600-01
Chr06	irgsp1_rep	three_prime_UTR	20419953	20419999	.	+	.	Parent=Os06t0542600-01
Chr06	irgsp1_rep	mRNA	20422820	20424059	.	-	.	ID=Os06t0542701-00;Name=Os06t0542701-00;Locus_id=Os06g0542701;Note=Protein of unknown function DUF295 domain containing protein.;Transcript_evidence=AK375039 (DDBJ);ORF_evidence=NP_001057809.1 (RefSeq);InterPro=Protein of unknown function DUF295 (IPR005174);TENOR=Os06t0542701-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	20423666	20424059	.	-	.	Parent=Os06t0542701-00
Chr06	irgsp1_rep	CDS	20422820	20423665	.	-	0	Parent=Os06t0542701-00
Chr06	irgsp1_rep	mRNA	20454402	20457003	.	-	.	ID=Os06t0543200-01;Name=Os06t0543200-01;Locus_id=Os06g0543200;CGSNL Gene Symbol=DLN168;CGSNL Gene Name=DLN REPRESSOR 168;Oryzabase Gene Symbol Synonym(s)=OsDLN168;Oryzabase Gene Name Synonym(s)=DLN repressor 168%2C DLN motif protein 168;Note=Similar to CDPK substrate protein 1.;Transcript_evidence=AK073606 (DDBJ%2C Best hit);ORF_evidence=A2YDV3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J033048N17;Oryzabase=23209;Expression=AK073606;TENOR=Os06t0543200-01;KEGG=Os06t0543200-01
Chr06	irgsp1_rep	five_prime_UTR	20456828	20457003	.	-	.	Parent=Os06t0543200-01
Chr06	irgsp1_rep	CDS	20456377	20456827	.	-	0	Parent=Os06t0543200-01
Chr06	irgsp1_rep	CDS	20456166	20456242	.	-	2	Parent=Os06t0543200-01
Chr06	irgsp1_rep	CDS	20455929	20455989	.	-	0	Parent=Os06t0543200-01
Chr06	irgsp1_rep	CDS	20455541	20455790	.	-	2	Parent=Os06t0543200-01
Chr06	irgsp1_rep	CDS	20454997	20455414	.	-	1	Parent=Os06t0543200-01
Chr06	irgsp1_rep	CDS	20454534	20454908	.	-	0	Parent=Os06t0543200-01
Chr06	irgsp1_rep	three_prime_UTR	20454402	20454533	.	-	.	Parent=Os06t0543200-01
Chr06	irgsp1_rep	mRNA	20490388	20492271	.	-	.	ID=Os06t0543400-01;Name=Os06t0543400-01;Locus_id=Os06g0543400;CGSNL Gene Symbol=CIPK25;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 25;Oryzabase Gene Symbol Synonym(s)=OsCIPK25;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 25;Note=Similar to CBL-interacting serine/threonine-protein kinase 11 (EC 2.7.1.37) (SOS2-like protein kinase PKS5) (SOS-interacting protein 4) (SNF1- related kinase 3.22).;Transcript_evidence=AK065374 (DDBJ%2C Best hit);ORF_evidence=Q5Z6X0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),NAF domain (IPR004041),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),NAF/FISL domain (IPR018451);NIAS_FLcDNA=J013003B24;Oryzabase=7413;Expression=AK065374;TENOR=Os06t0543400-01;KEGG=Os06t0543400-01 (EC:2.7.1.37%2C EC:2.7.11.11)
Chr06	irgsp1_rep	five_prime_UTR	20492195	20492271	.	-	.	Parent=Os06t0543400-01
Chr06	irgsp1_rep	CDS	20490650	20492194	.	-	0	Parent=Os06t0543400-01
Chr06	irgsp1_rep	three_prime_UTR	20490388	20490649	.	-	.	Parent=Os06t0543400-01
Chr06	irgsp1_rep	mRNA	20490740	20492137	.	+	.	ID=Os06t0543500-00;Name=Os06t0543500-00;Locus_id=Os06g0543500;Note=Hypothetical protein.;Transcript_evidence=tplb0042a18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0543500-00
Chr06	irgsp1_rep	five_prime_UTR	20490740	20490809	.	+	.	Parent=Os06t0543500-00
Chr06	irgsp1_rep	CDS	20490810	20491063	.	+	0	Parent=Os06t0543500-00
Chr06	irgsp1_rep	CDS	20491179	20491332	.	+	1	Parent=Os06t0543500-00
Chr06	irgsp1_rep	three_prime_UTR	20491333	20492137	.	+	.	Parent=Os06t0543500-00
Chr06	irgsp1_rep	mRNA	20497223	20498453	.	+	.	ID=Os06t0543601-01;Name=Os06t0543601-01;Locus_id=Os06g0543601;Note=Protein of unknown function DUF3778 domain containing protein.;Transcript_evidence=AK241304 (DDBJ%2C Best hit);ORF_evidence=NP_001174843.1 (RefSeq);InterPro=Protein of unknown function DUF3778 (IPR022256);NIAS_FLcDNA=J065140J16;TENOR=Os06t0543601-01;KEGG=Os06t0543601-01
Chr06	irgsp1_rep	five_prime_UTR	20497223	20498125	.	+	.	Parent=Os06t0543601-01
Chr06	irgsp1_rep	CDS	20498126	20498377	.	+	0	Parent=Os06t0543601-01
Chr06	irgsp1_rep	three_prime_UTR	20498378	20498453	.	+	.	Parent=Os06t0543601-01
Chr06	irgsp1_rep	mRNA	20522130	20524853	.	+	.	ID=Os06t0544100-01;Name=Os06t0544100-01;Locus_id=Os06g0544100;Note=Tyrosine protein kinase domain containing protein.;Transcript_evidence=AK242303 (DDBJ%2C Best hit);ORF_evidence=B8B3E1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J075193C19;TENOR=Os06t0544100-01;KEGG=Os06t0544100-01
Chr06	irgsp1_rep	five_prime_UTR	20522130	20522200	.	+	.	Parent=Os06t0544100-01
Chr06	irgsp1_rep	CDS	20522201	20523608	.	+	0	Parent=Os06t0544100-01
Chr06	irgsp1_rep	CDS	20524035	20524678	.	+	2	Parent=Os06t0544100-01
Chr06	irgsp1_rep	three_prime_UTR	20524679	20524853	.	+	.	Parent=Os06t0544100-01
Chr06	irgsp1_rep	mRNA	20581885	20583076	.	+	.	ID=Os06t0544650-00;Name=Os06t0544650-00;Locus_id=Os06g0544650;Note=Hypothetical protein.;Transcript_evidence=tplb0028j17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0544650-00
Chr06	irgsp1_rep	five_prime_UTR	20581885	20582517	.	+	.	Parent=Os06t0544650-00
Chr06	irgsp1_rep	five_prime_UTR	20582573	20582684	.	+	.	Parent=Os06t0544650-00
Chr06	irgsp1_rep	CDS	20582685	20583062	.	+	0	Parent=Os06t0544650-00
Chr06	irgsp1_rep	three_prime_UTR	20583063	20583076	.	+	.	Parent=Os06t0544650-00
Chr06	irgsp1_rep	mRNA	20581980	20582830	.	-	.	ID=Os06t0545200-00;Name=Os06t0545200-00;Locus_id=Os06g0545200;Oryzabase Gene Symbol Synonym(s)=OsPGL10%2C PGL10;Oryzabase Gene Name Synonym(s)=Polygalacturonases-Like 10%2C PG-like 10;Note=Similar to Zea m 13 allergen (Fragment).;Transcript_evidence=ab initio prediction;ORF_evidence=Q1ZYQ6 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);Oryzabase=22287;TENOR=Os06t0545200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	20582708	20582830	.	-	0	Parent=Os06t0545200-00
Chr06	irgsp1_rep	CDS	20581980	20582618	.	-	0	Parent=Os06t0545200-00
Chr06	irgsp1_rep	mRNA	20592028	20593494	.	-	.	ID=Os06t0545400-01;Name=Os06t0545400-01;Locus_id=Os06g0545400;Oryzabase Gene Symbol Synonym(s)=OsPGL1%2C PGL1;Oryzabase Gene Name Synonym(s)=Polygalacturonases-Like 1%2C PG-like 1;Note=Similar to Polygalacturonase (Fragment).;Transcript_evidence=AK240647 (DDBJ%2C Best hit),AK072748 (DDBJ%2C Best hit);ORF_evidence=NP_001105862.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=J023014L13,J023140O11;Oryzabase=22278;TENOR=Os06t0545400-01;KEGG=Os06t0545400-01
Chr06	irgsp1_rep	five_prime_UTR	20593442	20593494	.	-	.	Parent=Os06t0545400-01
Chr06	irgsp1_rep	CDS	20592950	20593441	.	-	0	Parent=Os06t0545400-01
Chr06	irgsp1_rep	CDS	20592099	20592845	.	-	0	Parent=Os06t0545400-01
Chr06	irgsp1_rep	three_prime_UTR	20592028	20592098	.	-	.	Parent=Os06t0545400-01
Chr06	irgsp1_rep	mRNA	20592130	20597712	.	+	.	ID=Os06t0545601-00;Name=Os06t0545601-00;Locus_id=Os06g0545601;Note=Hypothetical protein.;Transcript_evidence=tplb0028j17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0545601-00
Chr06	irgsp1_rep	five_prime_UTR	20592130	20592131	.	+	.	Parent=Os06t0545601-00
Chr06	irgsp1_rep	CDS	20592132	20592843	.	+	0	Parent=Os06t0545601-00
Chr06	irgsp1_rep	CDS	20592932	20593041	.	+	2	Parent=Os06t0545601-00
Chr06	irgsp1_rep	three_prime_UTR	20593042	20593310	.	+	.	Parent=Os06t0545601-00
Chr06	irgsp1_rep	three_prime_UTR	20597523	20597712	.	+	.	Parent=Os06t0545601-00
Chr06	irgsp1_rep	mRNA	20621210	20622856	.	-	.	ID=Os06t0545800-01;Name=Os06t0545800-01;Locus_id=Os06g0545800;Oryzabase Gene Symbol Synonym(s)=OsPGL8%2C PGL8;Oryzabase Gene Name Synonym(s)=Polygalacturonases-Like 8%2C PG-like 8;Note=Similar to Polygalacturonase (Fragment).;Transcript_evidence=AK240657 (DDBJ%2C Best hit);ORF_evidence=NP_001105862.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=J023135P03;Oryzabase=22285;TENOR=Os06t0545800-01;KEGG=Os06t0545800-01
Chr06	irgsp1_rep	five_prime_UTR	20622800	20622856	.	-	.	Parent=Os06t0545800-01
Chr06	irgsp1_rep	CDS	20622308	20622799	.	-	0	Parent=Os06t0545800-01
Chr06	irgsp1_rep	CDS	20621457	20622203	.	-	0	Parent=Os06t0545800-01
Chr06	irgsp1_rep	three_prime_UTR	20621210	20621456	.	-	.	Parent=Os06t0545800-01
Chr06	irgsp1_rep	mRNA	20621488	20622700	.	+	.	ID=Os06t0545825-00;Name=Os06t0545825-00;Locus_id=Os06g0545825;Note=Hypothetical protein.;Transcript_evidence=tplb0028j17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0545825-00
Chr06	irgsp1_rep	five_prime_UTR	20621488	20621489	.	+	.	Parent=Os06t0545825-00
Chr06	irgsp1_rep	CDS	20621490	20622201	.	+	0	Parent=Os06t0545825-00
Chr06	irgsp1_rep	CDS	20622290	20622399	.	+	2	Parent=Os06t0545825-00
Chr06	irgsp1_rep	three_prime_UTR	20622400	20622700	.	+	.	Parent=Os06t0545825-00
Chr06	irgsp1_rep	mRNA	20635352	20639619	.	-	.	ID=Os06t0545900-01;Name=Os06t0545900-01;Locus_id=Os06g0545900;Note=Protein of unknown function DUF246%2C plant family protein.;Transcript_evidence=AK070128 (DDBJ%2C Best hit);ORF_evidence=B6SV40 (UniProt);InterPro=GDP-fucose protein O-fucosyltransferase (IPR019378),O-fucosyltransferase%2C plant (IPR024709);NIAS_FLcDNA=J023045H18;Expression=AK070128;TENOR=Os06t0545900-01;KEGG=Os06t0545900-01
Chr06	irgsp1_rep	five_prime_UTR	20639105	20639619	.	-	.	Parent=Os06t0545900-01
Chr06	irgsp1_rep	CDS	20638811	20639104	.	-	0	Parent=Os06t0545900-01
Chr06	irgsp1_rep	CDS	20638210	20638299	.	-	0	Parent=Os06t0545900-01
Chr06	irgsp1_rep	CDS	20637985	20638090	.	-	0	Parent=Os06t0545900-01
Chr06	irgsp1_rep	CDS	20637641	20637711	.	-	2	Parent=Os06t0545900-01
Chr06	irgsp1_rep	CDS	20637465	20637553	.	-	0	Parent=Os06t0545900-01
Chr06	irgsp1_rep	CDS	20637080	20637200	.	-	1	Parent=Os06t0545900-01
Chr06	irgsp1_rep	CDS	20636774	20636917	.	-	0	Parent=Os06t0545900-01
Chr06	irgsp1_rep	CDS	20636339	20636664	.	-	0	Parent=Os06t0545900-01
Chr06	irgsp1_rep	CDS	20635994	20636234	.	-	1	Parent=Os06t0545900-01
Chr06	irgsp1_rep	CDS	20635575	20635904	.	-	0	Parent=Os06t0545900-01
Chr06	irgsp1_rep	three_prime_UTR	20635352	20635574	.	-	.	Parent=Os06t0545900-01
Chr06	irgsp1_rep	mRNA	20635496	20637023	.	+	.	ID=Os06t0546000-01;Name=Os06t0546000-01;Locus_id=Os06g0546000;Note=Hypothetical protein.;Transcript_evidence=AK064215 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-104-F05;Expression=AK064215;TENOR=Os06t0546000-01;KEGG=Os06t0546000-01
Chr06	irgsp1_rep	five_prime_UTR	20635496	20636257	.	+	.	Parent=Os06t0546000-01
Chr06	irgsp1_rep	CDS	20636258	20636926	.	+	0	Parent=Os06t0546000-01
Chr06	irgsp1_rep	three_prime_UTR	20636927	20637023	.	+	.	Parent=Os06t0546000-01
Chr06	irgsp1_rep	mRNA	20666472	20673698	.	+	.	ID=Os06t0546400-01;Name=Os06t0546400-01;Locus_id=Os06g0546400;Note=Similar to 50S ribosomal protein L1.;Transcript_evidence=AK067243 (DDBJ%2C Best hit);ORF_evidence=B6TB66 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L1%2C 2-layer alpha/beta-sandwich (IPR016094);NIAS_FLcDNA=J013099C01;TENOR=Os06t0546400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	20666472	20666547	.	+	.	Parent=Os06t0546400-01
Chr06	irgsp1_rep	CDS	20666548	20667129	.	+	0	Parent=Os06t0546400-01
Chr06	irgsp1_rep	CDS	20668367	20668480	.	+	0	Parent=Os06t0546400-01
Chr06	irgsp1_rep	three_prime_UTR	20668481	20670387	.	+	.	Parent=Os06t0546400-01
Chr06	irgsp1_rep	three_prime_UTR	20670455	20670560	.	+	.	Parent=Os06t0546400-01
Chr06	irgsp1_rep	three_prime_UTR	20670975	20671039	.	+	.	Parent=Os06t0546400-01
Chr06	irgsp1_rep	three_prime_UTR	20671119	20671163	.	+	.	Parent=Os06t0546400-01
Chr06	irgsp1_rep	three_prime_UTR	20671262	20671369	.	+	.	Parent=Os06t0546400-01
Chr06	irgsp1_rep	three_prime_UTR	20671456	20671543	.	+	.	Parent=Os06t0546400-01
Chr06	irgsp1_rep	three_prime_UTR	20671967	20672013	.	+	.	Parent=Os06t0546400-01
Chr06	irgsp1_rep	three_prime_UTR	20673246	20673698	.	+	.	Parent=Os06t0546400-01
Chr06	irgsp1_rep	mRNA	20676206	20677666	.	-	.	ID=Os06t0546500-01;Name=Os06t0546500-01;Locus_id=Os06g0546500;Oryzabase Gene Symbol Synonym(s)=prx88;Oryzabase Gene Name Synonym(s)=class III peroxidase 88;Note=Similar to Class III peroxidase GvPx2b (Fragment).;Transcript_evidence=AK073833 (DDBJ%2C Best hit);ORF_evidence=NP_001147254.1 (RefSeq);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J033068K09;Oryzabase=14611;Expression=AK073833;TENOR=Os06t0546500-01;KEGG=Os06t0546500-01
Chr06	irgsp1_rep	five_prime_UTR	20677566	20677666	.	-	.	Parent=Os06t0546500-01
Chr06	irgsp1_rep	CDS	20677353	20677565	.	-	0	Parent=Os06t0546500-01
Chr06	irgsp1_rep	CDS	20677056	20677247	.	-	0	Parent=Os06t0546500-01
Chr06	irgsp1_rep	CDS	20676427	20676978	.	-	0	Parent=Os06t0546500-01
Chr06	irgsp1_rep	three_prime_UTR	20676206	20676426	.	-	.	Parent=Os06t0546500-01
Chr06	irgsp1_rep	mRNA	20690576	20691745	.	-	.	ID=Os06t0547100-00;Name=Os06t0547100-00;Locus_id=Os06g0547100;Oryzabase Gene Symbol Synonym(s)=prx87;Oryzabase Gene Name Synonym(s)=class III peroxidase 87;Note=Similar to peroxidase 52.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001147254.1 (RefSeq);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);Oryzabase=14610;TENOR=Os06t0547100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	20691509	20691745	.	-	0	Parent=Os06t0547100-00
Chr06	irgsp1_rep	CDS	20691220	20691411	.	-	0	Parent=Os06t0547100-00
Chr06	irgsp1_rep	CDS	20690576	20691130	.	-	0	Parent=Os06t0547100-00
Chr06	irgsp1_rep	mRNA	20696659	20697323	.	-	.	ID=Os06t0547201-00;Name=Os06t0547201-00;Locus_id=Os06g0547201;Note=Non-protein coding transcript.;Transcript_evidence=CT836322 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os06t0547201-00
Chr06	irgsp1_rep	exon	20696659	20697323	.	-	.	Parent=Os06t0547201-00
Chr06	irgsp1_rep	mRNA	20705378	20706934	.	-	.	ID=Os06t0547400-01;Name=Os06t0547400-01;Locus_id=Os06g0547400;Oryzabase Gene Symbol Synonym(s)=prx86%2C PRX86%2C OsPRX86;Oryzabase Gene Name Synonym(s)=class III peroxidase 86%2C peroxidase FLXPER4%2C PER4;Note=Similar to Peroxidase P7 (EC 1.11.1.7) (TP7).;Transcript_evidence=AK121950 (DDBJ%2C Best hit);ORF_evidence=NP_001147254.1 (RefSeq);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J033107J23;Oryzabase=14609;Expression=AK121950;TENOR=Os06t0547400-01;KEGG=Os06t0547400-01 (EC:1.11.1.7)
Chr06	irgsp1_rep	five_prime_UTR	20706838	20706934	.	-	.	Parent=Os06t0547400-01
Chr06	irgsp1_rep	CDS	20706607	20706837	.	-	0	Parent=Os06t0547400-01
Chr06	irgsp1_rep	CDS	20706298	20706489	.	-	0	Parent=Os06t0547400-01
Chr06	irgsp1_rep	CDS	20705650	20706201	.	-	0	Parent=Os06t0547400-01
Chr06	irgsp1_rep	three_prime_UTR	20705378	20705649	.	-	.	Parent=Os06t0547400-01
Chr06	irgsp1_rep	mRNA	20712608	20714600	.	-	.	ID=Os06t0547500-01;Name=Os06t0547500-01;Locus_id=Os06g0547500;Note=Hypothetical protein.;Transcript_evidence=AK107081 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-121-F11;TENOR=Os06t0547500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	20713392	20714600	.	-	.	Parent=Os06t0547500-01
Chr06	irgsp1_rep	CDS	20713005	20713391	.	-	0	Parent=Os06t0547500-01
Chr06	irgsp1_rep	three_prime_UTR	20712608	20713004	.	-	.	Parent=Os06t0547500-01
Chr06	irgsp1_rep	mRNA	20717808	20724599	.	+	.	ID=Os06t0547900-01;Name=Os06t0547900-01;Locus_id=Os06g0547900;Oryzabase Gene Symbol Synonym(s)=GSK4%2C Os GSK4%2C OsGSK4%2C OsSKetha%2C OsSKETHA%2C SKETHA%2C OsSK24/OsGSK8%2C OsSK24%2C OsGSK8%2C SK24%2C GSK8;Oryzabase Gene Name Synonym(s)=GSK3/SHAGGY-Like Kinase 4%2C shaggy-like kinase etha%2C GSK3/SHAGGY-Like Kinase 24%2C GSK3-like Kinase 8;Note=Similar to Shaggy-related protein kinase eta (EC 2.7.1.-) (ASK-eta) (BRASSINOSTEROID-INSENSITIVE 2) (ULTRACURVATA1).;Transcript_evidence=AK105665 (DDBJ%2C Best hit);ORF_evidence=O04401 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-200-H08;Oryzabase=10943;Expression=AK105665;TENOR=Os06t0547900-01;KEGG=Os06t0547900-01 (EC:2.7.11.26)
Chr06	irgsp1_rep	five_prime_UTR	20717808	20717965	.	+	.	Parent=Os06t0547900-01
Chr06	irgsp1_rep	CDS	20717966	20718076	.	+	0	Parent=Os06t0547900-01
Chr06	irgsp1_rep	CDS	20719043	20719132	.	+	0	Parent=Os06t0547900-01
Chr06	irgsp1_rep	CDS	20719231	20719290	.	+	0	Parent=Os06t0547900-01
Chr06	irgsp1_rep	CDS	20719373	20719645	.	+	0	Parent=Os06t0547900-01
Chr06	irgsp1_rep	CDS	20719737	20719811	.	+	0	Parent=Os06t0547900-01
Chr06	irgsp1_rep	CDS	20719894	20719950	.	+	0	Parent=Os06t0547900-01
Chr06	irgsp1_rep	CDS	20720640	20720780	.	+	0	Parent=Os06t0547900-01
Chr06	irgsp1_rep	CDS	20720886	20720936	.	+	0	Parent=Os06t0547900-01
Chr06	irgsp1_rep	CDS	20721014	20721109	.	+	0	Parent=Os06t0547900-01
Chr06	irgsp1_rep	CDS	20721302	20721385	.	+	0	Parent=Os06t0547900-01
Chr06	irgsp1_rep	CDS	20723559	20723660	.	+	0	Parent=Os06t0547900-01
Chr06	irgsp1_rep	CDS	20724080	20724151	.	+	0	Parent=Os06t0547900-01
Chr06	irgsp1_rep	three_prime_UTR	20724152	20724599	.	+	.	Parent=Os06t0547900-01
Chr06	irgsp1_rep	mRNA	20717831	20724628	.	+	.	ID=Os06t0547900-02;Name=Os06t0547900-02;Locus_id=Os06g0547900;Oryzabase Gene Symbol Synonym(s)=GSK4%2C Os GSK4%2C OsGSK4%2C OsSKetha%2C OsSKETHA%2C SKETHA%2C OsSK24/OsGSK8%2C OsSK24%2C OsGSK8%2C SK24%2C GSK8;Oryzabase Gene Name Synonym(s)=GSK3/SHAGGY-Like Kinase 4%2C shaggy-like kinase etha%2C GSK3/SHAGGY-Like Kinase 24%2C GSK3-like Kinase 8;Note=Similar to Shaggy-related protein kinase eta (EC 2.7.1.-) (ASK-eta) (BRASSINOSTEROID-INSENSITIVE 2) (ULTRACURVATA1).;Transcript_evidence=AK100950 (DDBJ%2C Best hit);ORF_evidence=O04401 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023139I22;Oryzabase=10943;Expression=AK100950;TENOR=Os06t0547900-02;KEGG=Os06t0547900-02 (EC:2.7.11.26)
Chr06	irgsp1_rep	five_prime_UTR	20717831	20717965	.	+	.	Parent=Os06t0547900-02
Chr06	irgsp1_rep	CDS	20717966	20718076	.	+	0	Parent=Os06t0547900-02
Chr06	irgsp1_rep	CDS	20719043	20719132	.	+	0	Parent=Os06t0547900-02
Chr06	irgsp1_rep	CDS	20719231	20719290	.	+	0	Parent=Os06t0547900-02
Chr06	irgsp1_rep	CDS	20719373	20719645	.	+	0	Parent=Os06t0547900-02
Chr06	irgsp1_rep	CDS	20719737	20719811	.	+	0	Parent=Os06t0547900-02
Chr06	irgsp1_rep	CDS	20719894	20719950	.	+	0	Parent=Os06t0547900-02
Chr06	irgsp1_rep	CDS	20720640	20720780	.	+	0	Parent=Os06t0547900-02
Chr06	irgsp1_rep	CDS	20720886	20720936	.	+	0	Parent=Os06t0547900-02
Chr06	irgsp1_rep	CDS	20721014	20721109	.	+	0	Parent=Os06t0547900-02
Chr06	irgsp1_rep	CDS	20721302	20721385	.	+	0	Parent=Os06t0547900-02
Chr06	irgsp1_rep	CDS	20723559	20723660	.	+	0	Parent=Os06t0547900-02
Chr06	irgsp1_rep	CDS	20724080	20724151	.	+	0	Parent=Os06t0547900-02
Chr06	irgsp1_rep	three_prime_UTR	20724152	20724628	.	+	.	Parent=Os06t0547900-02
Chr06	irgsp1_rep	mRNA	20719349	20723660	.	-	.	ID=Os06t0547933-00;Name=Os06t0547933-00;Locus_id=Os06g0547933;Note=Hypothetical protein.;Transcript_evidence=tplb0034j24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0547933-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	20723577	20723660	.	-	.	Parent=Os06t0547933-00
Chr06	irgsp1_rep	CDS	20723557	20723576	.	-	0	Parent=Os06t0547933-00
Chr06	irgsp1_rep	CDS	20721311	20721380	.	-	1	Parent=Os06t0547933-00
Chr06	irgsp1_rep	CDS	20720975	20721121	.	-	0	Parent=Os06t0547933-00
Chr06	irgsp1_rep	three_prime_UTR	20720971	20720974	.	-	.	Parent=Os06t0547933-00
Chr06	irgsp1_rep	three_prime_UTR	20720634	20720787	.	-	.	Parent=Os06t0547933-00
Chr06	irgsp1_rep	three_prime_UTR	20719734	20719870	.	-	.	Parent=Os06t0547933-00
Chr06	irgsp1_rep	three_prime_UTR	20719349	20719642	.	-	.	Parent=Os06t0547933-00
Chr06	irgsp1_rep	mRNA	20727293	20731768	.	-	.	ID=Os06t0548000-01;Name=Os06t0548000-01;Locus_id=Os06g0548000;Note=Aspartate aminotransferase (EC 2.6.1.1).;Transcript_evidence=AK101008 (DDBJ%2C Best hit);ORF_evidence=B8B3J3 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transaminase activity (GO:0008483),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aspartate/other aminotransferase (IPR000796),Aminotransferases%2C class-I%2C pyridoxal-phosphate-binding site (IPR004838),Aminotransferase%2C class I/classII (IPR004839),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J023148G14;Expression=AK101008;TENOR=Os06t0548000-01;KEGG=Os06t0548000-01 (EC:2.6.1.1)
Chr06	irgsp1_rep	five_prime_UTR	20731766	20731768	.	-	.	Parent=Os06t0548000-01
Chr06	irgsp1_rep	CDS	20731475	20731765	.	-	0	Parent=Os06t0548000-01
Chr06	irgsp1_rep	CDS	20731298	20731383	.	-	0	Parent=Os06t0548000-01
Chr06	irgsp1_rep	CDS	20729561	20729767	.	-	1	Parent=Os06t0548000-01
Chr06	irgsp1_rep	CDS	20729280	20729385	.	-	1	Parent=Os06t0548000-01
Chr06	irgsp1_rep	CDS	20728922	20729026	.	-	0	Parent=Os06t0548000-01
Chr06	irgsp1_rep	CDS	20728664	20728836	.	-	0	Parent=Os06t0548000-01
Chr06	irgsp1_rep	CDS	20728162	20728321	.	-	1	Parent=Os06t0548000-01
Chr06	irgsp1_rep	CDS	20727947	20728042	.	-	0	Parent=Os06t0548000-01
Chr06	irgsp1_rep	CDS	20727750	20727844	.	-	0	Parent=Os06t0548000-01
Chr06	irgsp1_rep	CDS	20727568	20727640	.	-	1	Parent=Os06t0548000-01
Chr06	irgsp1_rep	three_prime_UTR	20727293	20727567	.	-	.	Parent=Os06t0548000-01
Chr06	irgsp1_rep	mRNA	20735880	20737650	.	-	.	ID=Os06t0548100-00;Name=Os06t0548100-00;Locus_id=Os06g0548100;Note=Similar to Nectarin 5 (Fragment).;Transcript_evidence=AK332465 (DDBJ);ORF_evidence=NP_001148634.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=FAD linked oxidase%2C N-terminal (IPR006094),Berberine/berberine-like (IPR012951),FAD-binding%2C type 2 (IPR016166),FAD-linked oxidase%2C FAD-binding%2C subdomain 2 (IPR016168);TENOR=Os06t0548100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	20736043	20737650	.	-	0	Parent=Os06t0548100-00
Chr06	irgsp1_rep	three_prime_UTR	20735880	20736042	.	-	.	Parent=Os06t0548100-00
Chr06	irgsp1_rep	mRNA	20736058	20737617	.	+	.	ID=Os06t0548150-00;Name=Os06t0548150-00;Locus_id=Os06g0548150;Note=Hypothetical protein.;Transcript_evidence=BT055691 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0548150-00
Chr06	irgsp1_rep	five_prime_UTR	20736058	20736363	.	+	.	Parent=Os06t0548150-00
Chr06	irgsp1_rep	five_prime_UTR	20736425	20736524	.	+	.	Parent=Os06t0548150-00
Chr06	irgsp1_rep	five_prime_UTR	20736626	20736700	.	+	.	Parent=Os06t0548150-00
Chr06	irgsp1_rep	CDS	20736701	20737165	.	+	0	Parent=Os06t0548150-00
Chr06	irgsp1_rep	three_prime_UTR	20737166	20737617	.	+	.	Parent=Os06t0548150-00
Chr06	irgsp1_rep	mRNA	20751199	20752955	.	-	.	ID=Os06t0548200-01;Name=Os06t0548200-01;Locus_id=Os06g0548200;Note=FAD linked oxidase%2C N-terminal domain containing protein.;Transcript_evidence=AK105176 (DDBJ%2C Best hit);ORF_evidence=NP_001148634.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=FAD linked oxidase%2C N-terminal (IPR006094),Berberine/berberine-like (IPR012951),FAD-binding%2C type 2 (IPR016166),FAD-binding%2C type 2%2C subdomain 1 (IPR016167),FAD-linked oxidase%2C FAD-binding%2C subdomain 2 (IPR016168);NIAS_FLcDNA=001-104-H12;Expression=AK105176;TENOR=Os06t0548200-01;KEGG=Os06t0548200-01
Chr06	irgsp1_rep	five_prime_UTR	20752913	20752955	.	-	.	Parent=Os06t0548200-01
Chr06	irgsp1_rep	CDS	20751308	20752912	.	-	0	Parent=Os06t0548200-01
Chr06	irgsp1_rep	three_prime_UTR	20751199	20751307	.	-	.	Parent=Os06t0548200-01
Chr06	irgsp1_rep	mRNA	20751318	20752891	.	+	.	ID=Os06t0548350-00;Name=Os06t0548350-00;Locus_id=Os06g0548350;Note=Hypothetical protein.;Transcript_evidence=BT055691 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0548350-00
Chr06	irgsp1_rep	five_prime_UTR	20751318	20751580	.	+	.	Parent=Os06t0548350-00
Chr06	irgsp1_rep	five_prime_UTR	20751642	20751793	.	+	.	Parent=Os06t0548350-00
Chr06	irgsp1_rep	five_prime_UTR	20751888	20751914	.	+	.	Parent=Os06t0548350-00
Chr06	irgsp1_rep	CDS	20751915	20752424	.	+	0	Parent=Os06t0548350-00
Chr06	irgsp1_rep	three_prime_UTR	20752425	20752891	.	+	.	Parent=Os06t0548350-00
Chr06	irgsp1_rep	mRNA	20760706	20761602	.	-	.	ID=Os06t0548500-01;Name=Os06t0548500-01;Locus_id=Os06g0548500;Note=Conserved hypothetical protein.;Transcript_evidence=AK107690 (DDBJ%2C Best hit);ORF_evidence=Q5Z7I2 (UniProt);NIAS_FLcDNA=002-132-B11;TENOR=Os06t0548500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	20761421	20761602	.	-	.	Parent=Os06t0548500-01
Chr06	irgsp1_rep	CDS	20760941	20761420	.	-	0	Parent=Os06t0548500-01
Chr06	irgsp1_rep	three_prime_UTR	20760706	20760940	.	-	.	Parent=Os06t0548500-01
Chr06	irgsp1_rep	mRNA	20767656	20769684	.	-	.	ID=Os06t0548800-01;Name=Os06t0548800-01;Locus_id=Os06g0548800;Note=Similar to Nectarin 5 (Fragment).;Transcript_evidence=AK072611 (DDBJ%2C Best hit);ORF_evidence=Q5QJ60 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=FAD linked oxidase%2C N-terminal (IPR006094),Berberine/berberine-like (IPR012951),FAD-binding%2C type 2 (IPR016166),FAD-linked oxidase%2C FAD-binding%2C subdomain 2 (IPR016168);NIAS_FLcDNA=J023133A01;Expression=AK072611;TENOR=Os06t0548800-01;KEGG=Os06t0548800-01
Chr06	irgsp1_rep	five_prime_UTR	20769673	20769684	.	-	.	Parent=Os06t0548800-01
Chr06	irgsp1_rep	CDS	20768077	20769672	.	-	0	Parent=Os06t0548800-01
Chr06	irgsp1_rep	three_prime_UTR	20767656	20768076	.	-	.	Parent=Os06t0548800-01
Chr06	irgsp1_rep	mRNA	20768084	20769550	.	+	.	ID=Os06t0549050-00;Name=Os06t0549050-00;Locus_id=Os06g0549050;Note=Hypothetical protein.;Transcript_evidence=BT055691 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0549050-00
Chr06	irgsp1_rep	five_prime_UTR	20768084	20768322	.	+	.	Parent=Os06t0549050-00
Chr06	irgsp1_rep	five_prime_UTR	20768378	20768515	.	+	.	Parent=Os06t0549050-00
Chr06	irgsp1_rep	CDS	20768516	20768540	.	+	0	Parent=Os06t0549050-00
Chr06	irgsp1_rep	CDS	20768678	20768979	.	+	2	Parent=Os06t0549050-00
Chr06	irgsp1_rep	three_prime_UTR	20768980	20769550	.	+	.	Parent=Os06t0549050-00
Chr06	irgsp1_rep	mRNA	20784441	20786120	.	-	.	ID=Os06t0549300-00;Name=Os06t0549300-00;Locus_id=Os06g0549300;Note=Similar to reticuline oxidase.;Transcript_evidence=CT836254 (DDBJ%2C Best hit);ORF_evidence=NP_001148634.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=FAD linked oxidase%2C N-terminal (IPR006094),Berberine/berberine-like (IPR012951),FAD-binding%2C type 2 (IPR016166),FAD-linked oxidase%2C FAD-binding%2C subdomain 2 (IPR016168);TENOR=Os06t0549300-00;KEGG=Os06t0549300-00
Chr06	irgsp1_rep	CDS	20784549	20786120	.	-	0	Parent=Os06t0549300-00
Chr06	irgsp1_rep	three_prime_UTR	20784441	20784548	.	-	.	Parent=Os06t0549300-00
Chr06	irgsp1_rep	mRNA	20784583	20786054	.	+	.	ID=Os06t0549337-00;Name=Os06t0549337-00;Locus_id=Os06g0549337;Note=Hypothetical protein.;Transcript_evidence=BT055691 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0549337-00
Chr06	irgsp1_rep	five_prime_UTR	20784583	20784584	.	+	.	Parent=Os06t0549337-00
Chr06	irgsp1_rep	CDS	20784585	20785068	.	+	0	Parent=Os06t0549337-00
Chr06	irgsp1_rep	CDS	20785236	20785282	.	+	2	Parent=Os06t0549337-00
Chr06	irgsp1_rep	three_prime_UTR	20785283	20786054	.	+	.	Parent=Os06t0549337-00
Chr06	irgsp1_rep	mRNA	20806744	20809842	.	+	.	ID=Os06t0549525-00;Name=Os06t0549525-00;Locus_id=Os06g0549525;Note=Hypothetical protein.;Transcript_evidence=AK330151 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0549525-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	20806744	20806756	.	+	.	Parent=Os06t0549525-00
Chr06	irgsp1_rep	CDS	20806757	20806913	.	+	0	Parent=Os06t0549525-00
Chr06	irgsp1_rep	CDS	20809486	20809842	.	+	2	Parent=Os06t0549525-00
Chr06	irgsp1_rep	mRNA	20808194	20810005	.	-	.	ID=Os06t0549600-01;Name=Os06t0549600-01;Locus_id=Os06g0549600;Note=FAD-linked oxidase%2C FAD-binding%2C subdomain 2 domain containing protein.;Transcript_evidence=AK073505 (DDBJ%2C Best hit);ORF_evidence=NP_001148634.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=FAD linked oxidase%2C N-terminal (IPR006094),Berberine/berberine-like (IPR012951),FAD-binding%2C type 2 (IPR016166),FAD-binding%2C type 2%2C subdomain 1 (IPR016167),FAD-linked oxidase%2C FAD-binding%2C subdomain 2 (IPR016168);NIAS_FLcDNA=J033046H14;Expression=AK073505;TENOR=Os06t0549600-01;KEGG=Os06t0549600-01
Chr06	irgsp1_rep	five_prime_UTR	20809956	20810005	.	-	.	Parent=Os06t0549600-01
Chr06	irgsp1_rep	CDS	20808375	20809955	.	-	0	Parent=Os06t0549600-01
Chr06	irgsp1_rep	three_prime_UTR	20808194	20808374	.	-	.	Parent=Os06t0549600-01
Chr06	irgsp1_rep	mRNA	20812459	20814107	.	-	.	ID=Os06t0549633-00;Name=Os06t0549633-00;Locus_id=Os06g0549633;Note=Similar to reticuline oxidase.;Transcript_evidence=AK377141 (DDBJ);ORF_evidence=Q5TIW4 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=FAD linked oxidase%2C N-terminal (IPR006094),Berberine/berberine-like (IPR012951),FAD-binding%2C type 2 (IPR016166),FAD-binding%2C type 2%2C subdomain 1 (IPR016167),FAD-linked oxidase%2C FAD-binding%2C subdomain 2 (IPR016168);TENOR=Os06t0549633-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	20812521	20814107	.	-	0	Parent=Os06t0549633-00
Chr06	irgsp1_rep	three_prime_UTR	20812459	20812520	.	-	.	Parent=Os06t0549633-00
Chr06	irgsp1_rep	mRNA	20812670	20813967	.	+	.	ID=Os06t0549666-00;Name=Os06t0549666-00;Locus_id=Os06g0549666;Note=Hypothetical gene.;Transcript_evidence=EU957461 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0549666-00
Chr06	irgsp1_rep	five_prime_UTR	20812670	20813028	.	+	.	Parent=Os06t0549666-00
Chr06	irgsp1_rep	CDS	20813029	20813058	.	+	0	Parent=Os06t0549666-00
Chr06	irgsp1_rep	CDS	20813190	20813967	.	+	0	Parent=Os06t0549666-00
Chr06	irgsp1_rep	mRNA	20821741	20825185	.	-	.	ID=Os06t0549700-01;Name=Os06t0549700-01;Locus_id=Os06g0549700;Note=Conserved hypothetical protein.;Transcript_evidence=AK069260 (DDBJ%2C Best hit);ORF_evidence=B9FTP6 (UniProt);NIAS_FLcDNA=J023010J16;TENOR=Os06t0549700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	20825007	20825185	.	-	.	Parent=Os06t0549700-01
Chr06	irgsp1_rep	CDS	20824587	20825006	.	-	0	Parent=Os06t0549700-01
Chr06	irgsp1_rep	three_prime_UTR	20821741	20824586	.	-	.	Parent=Os06t0549700-01
Chr06	irgsp1_rep	mRNA	20832520	20834491	.	-	.	ID=Os06t0549900-01;Name=Os06t0549900-01;Locus_id=Os06g0549900;Note=FAD linked oxidase%2C N-terminal domain containing protein.;Transcript_evidence=AK109673 (DDBJ%2C Best hit);ORF_evidence=Q5QJ60 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=FAD linked oxidase%2C N-terminal (IPR006094),Berberine/berberine-like (IPR012951),FAD-binding%2C type 2 (IPR016166),FAD-linked oxidase%2C FAD-binding%2C subdomain 2 (IPR016168);NIAS_FLcDNA=002-145-B05;Expression=AK109673;TENOR=Os06t0549900-01;KEGG=Os06t0549900-01
Chr06	irgsp1_rep	five_prime_UTR	20834434	20834491	.	-	.	Parent=Os06t0549900-01
Chr06	irgsp1_rep	CDS	20832847	20834433	.	-	0	Parent=Os06t0549900-01
Chr06	irgsp1_rep	three_prime_UTR	20832520	20832846	.	-	.	Parent=Os06t0549900-01
Chr06	irgsp1_rep	mRNA	20832863	20834348	.	+	.	ID=Os06t0549950-00;Name=Os06t0549950-00;Locus_id=Os06g0549950;Note=Hypothetical protein.;Transcript_evidence=BT055691 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0549950-00
Chr06	irgsp1_rep	five_prime_UTR	20832863	20832864	.	+	.	Parent=Os06t0549950-00
Chr06	irgsp1_rep	CDS	20832865	20833354	.	+	0	Parent=Os06t0549950-00
Chr06	irgsp1_rep	CDS	20833541	20834348	.	+	2	Parent=Os06t0549950-00
Chr06	irgsp1_rep	mRNA	20851191	20853613	.	-	.	ID=Os06t0550000-00;Name=Os06t0550000-00;Locus_id=Os06g0550000;Note=Similar to 60S ribosomal protein L11.;Transcript_evidence=EU959195 (DDBJ);ORF_evidence=Q0DK10 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L5 (IPR002132),Ribosomal protein L5%2C conserved site (IPR020929),Ribosomal protein L5 domain (IPR022803);TENOR=Os06t0550000-00;KEGG=Os06t0550000-00
Chr06	irgsp1_rep	CDS	20853452	20853613	.	-	0	Parent=Os06t0550000-00
Chr06	irgsp1_rep	CDS	20852625	20852667	.	-	0	Parent=Os06t0550000-00
Chr06	irgsp1_rep	CDS	20852342	20852537	.	-	2	Parent=Os06t0550000-00
Chr06	irgsp1_rep	CDS	20851300	20851498	.	-	1	Parent=Os06t0550000-00
Chr06	irgsp1_rep	three_prime_UTR	20851191	20851299	.	-	.	Parent=Os06t0550000-00
Chr06	irgsp1_rep	mRNA	20851295	20853560	.	+	.	ID=Os06t0550266-00;Name=Os06t0550266-00;Locus_id=Os06g0550266;Note=Non-protein coding transcript.;Transcript_evidence=BT016915 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0550266-00
Chr06	irgsp1_rep	exon	20851295	20851483	.	+	.	Parent=Os06t0550266-00
Chr06	irgsp1_rep	exon	20852328	20852565	.	+	.	Parent=Os06t0550266-00
Chr06	irgsp1_rep	exon	20853441	20853560	.	+	.	Parent=Os06t0550266-00
Chr06	irgsp1_rep	mRNA	20861179	20861322	.	+	.	ID=Os06t0550442-00;Name=Os06t0550442-00;Locus_id=Os06g0550442;Note=Similar to WUSCHEL-related homeobox 11.;Transcript_evidence=AM234775 (DDBJ);ORF_evidence=NP_001147238.1 (RefSeq);TENOR=Os06t0550442-00
Chr06	irgsp1_rep	CDS	20861179	20861322	.	+	0	Parent=Os06t0550442-00
Chr06	irgsp1_rep	mRNA	20868637	20869553	.	-	.	ID=Os06t0550800-00;Name=Os06t0550800-00;Locus_id=Os06g0550800;Note=Conserved hypothetical protein.;Transcript_evidence=AK376009 (DDBJ);ORF_evidence=NP_001057835.1 (RefSeq);TENOR=Os06t0550800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	20869495	20869553	.	-	.	Parent=Os06t0550800-00
Chr06	irgsp1_rep	CDS	20868643	20869494	.	-	0	Parent=Os06t0550800-00
Chr06	irgsp1_rep	three_prime_UTR	20868637	20868642	.	-	.	Parent=Os06t0550800-00
Chr06	irgsp1_rep	mRNA	20873046	20873423	.	-	.	ID=Os06t0550901-00;Name=Os06t0550901-00;Locus_id=Os06g0550901;Note=Non-protein coding transcript.;Transcript_evidence=CU861804 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os06t0550901-00
Chr06	irgsp1_rep	exon	20873046	20873423	.	-	.	Parent=Os06t0550901-00
Chr06	irgsp1_rep	mRNA	20879364	20880775	.	-	.	ID=Os06t0551000-01;Name=Os06t0551000-01;Locus_id=Os06g0551000;Note=Hypothetical protein.;Transcript_evidence=AK105490 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-127-B12;Expression=AK105490;TENOR=Os06t0551000-01;KEGG=Os06t0551000-01
Chr06	irgsp1_rep	five_prime_UTR	20880231	20880775	.	-	.	Parent=Os06t0551000-01
Chr06	irgsp1_rep	CDS	20879805	20880230	.	-	0	Parent=Os06t0551000-01
Chr06	irgsp1_rep	three_prime_UTR	20879364	20879804	.	-	.	Parent=Os06t0551000-01
Chr06	irgsp1_rep	mRNA	20896135	20901653	.	-	.	ID=Os06t0551400-01;Name=Os06t0551400-01;Locus_id=Os06g0551400;RAP-DB Gene Symbol Synonym(s)=OsRab11%2C ric2;RAP-DB Gene Name Synonym(s)=ras-related small GTP-binding protein ric2;Oryzabase Gene Symbol Synonym(s)=OsRab11D1%2C OsRab11%2C Rab11%2C ric2;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab11D1%2C ras-related small GTP-binding protein ric2;Note=Ras-related small GTP-binding protein%2C Regulation of vesicular trafficking from trans-Golgi network to plasma membrane or vacuole%2C Jasmonic acid (JA)-mediated defense signaling;Transcript_evidence=AK066548;ORF_evidence=P40393;GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),P-loop containing nucleoside triphosphate hydrolase (IPR027417),Small GTP-binding protein domain (IPR005225);NIAS_FLcDNA=J013069H14;Manual Curation=May 9%2C 2017;Literature_PMID=23602899,23199687,16230331,8405471;Oryzabase=11102;Expression=AK066548;TENOR=Os06t0551400-01;KEGG=Os06t0551400-01
Chr06	irgsp1_rep	five_prime_UTR	20901565	20901653	.	-	.	Parent=Os06t0551400-01
Chr06	irgsp1_rep	CDS	20901341	20901564	.	-	0	Parent=Os06t0551400-01
Chr06	irgsp1_rep	CDS	20896397	20896826	.	-	1	Parent=Os06t0551400-01
Chr06	irgsp1_rep	three_prime_UTR	20896135	20896396	.	-	.	Parent=Os06t0551400-01
Chr06	irgsp1_rep	mRNA	20896377	20901481	.	+	.	ID=Os06t0551450-00;Name=Os06t0551450-00;Locus_id=Os06g0551450;Note=Non-protein coding transcript.;Transcript_evidence=EU948966 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0551450-00
Chr06	irgsp1_rep	exon	20896377	20896928	.	+	.	Parent=Os06t0551450-00
Chr06	irgsp1_rep	exon	20901322	20901481	.	+	.	Parent=Os06t0551450-00
Chr06	irgsp1_rep	mRNA	20906011	20907211	.	+	.	ID=Os06t0551500-01;Name=Os06t0551500-01;Locus_id=Os06g0551500;Note=Conserved hypothetical protein.;Transcript_evidence=AK065833 (DDBJ%2C Best hit);ORF_evidence=B8B3K3 (UniProt);NIAS_FLcDNA=J013040K01;Expression=AK065833;TENOR=Os06t0551500-01;KEGG=Os06t0551500-01
Chr06	irgsp1_rep	five_prime_UTR	20906011	20906152	.	+	.	Parent=Os06t0551500-01
Chr06	irgsp1_rep	CDS	20906153	20906455	.	+	0	Parent=Os06t0551500-01
Chr06	irgsp1_rep	CDS	20906714	20906737	.	+	0	Parent=Os06t0551500-01
Chr06	irgsp1_rep	three_prime_UTR	20906738	20907211	.	+	.	Parent=Os06t0551500-01
Chr06	irgsp1_rep	mRNA	20915614	20918494	.	+	.	ID=Os06t0551800-01;Name=Os06t0551800-01;Locus_id=Os06g0551800;Note=Bulb-type lectin domain domain containing protein.;Transcript_evidence=AK065388 (DDBJ%2C Best hit);ORF_evidence=A3BCM3 (UniProt);GO=Molecular Function: sugar binding (GO:0005529);InterPro=Bulb-type lectin domain (IPR001480);NIAS_FLcDNA=J013022I17;TENOR=Os06t0551800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	20915614	20915906	.	+	.	Parent=Os06t0551800-01
Chr06	irgsp1_rep	CDS	20915907	20916611	.	+	0	Parent=Os06t0551800-01
Chr06	irgsp1_rep	three_prime_UTR	20916612	20918494	.	+	.	Parent=Os06t0551800-01
Chr06	irgsp1_rep	mRNA	20929240	20931162	.	+	.	ID=Os06t0552000-00;Name=Os06t0552000-00;Locus_id=Os06g0552000;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AJ004857 (DDBJ);ORF_evidence=Q5Z932 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Bulb-type lectin domain (IPR001480),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441);TENOR=Os06t0552000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	20929240	20931162	.	+	0	Parent=Os06t0552000-00
Chr06	irgsp1_rep	mRNA	20941120	20944077	.	+	.	ID=Os06t0552300-01;Name=Os06t0552300-01;Locus_id=Os06g0552300;CGSNL Gene Symbol=BZR3;CGSNL Gene Name=BRASSINAZOLE RESISTANT 3;Oryzabase Gene Symbol Synonym(s)=OsBZR3;Oryzabase Gene Name Synonym(s)=BRASSINAZOLE-RESISTANT3;Note=BZR1%2C transcriptional repressor family protein.;Transcript_evidence=AK101229 (DDBJ%2C Best hit);ORF_evidence=NP_001136786.1 (RefSeq);InterPro=BZR1%2C transcriptional repressor (IPR008540);NIAS_FLcDNA=J033031H19;Oryzabase=22436;Expression=AK101229;TENOR=Os06t0552300-01;KEGG=Os06t0552300-01
Chr06	irgsp1_rep	five_prime_UTR	20941120	20941287	.	+	.	Parent=Os06t0552300-01
Chr06	irgsp1_rep	CDS	20941288	20941539	.	+	0	Parent=Os06t0552300-01
Chr06	irgsp1_rep	CDS	20942975	20943790	.	+	0	Parent=Os06t0552300-01
Chr06	irgsp1_rep	three_prime_UTR	20943791	20944077	.	+	.	Parent=Os06t0552300-01
Chr06	irgsp1_rep	mRNA	20946146	20952716	.	-	.	ID=Os06t0552400-01;Name=Os06t0552400-01;Locus_id=Os06g0552400;Note=Similar to zinc ion binding protein.;Transcript_evidence=AK106524 (DDBJ%2C Best hit);ORF_evidence=NP_001147080.1 (RefSeq);GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C FYVE-type (IPR000306),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C FYVE-related (IPR017455);NIAS_FLcDNA=002-107-D09;Expression=AK106524;TENOR=Os06t0552400-01;KEGG=Os06t0552400-01
Chr06	irgsp1_rep	five_prime_UTR	20952582	20952716	.	-	.	Parent=Os06t0552400-01
Chr06	irgsp1_rep	CDS	20952393	20952581	.	-	0	Parent=Os06t0552400-01
Chr06	irgsp1_rep	CDS	20950654	20951652	.	-	0	Parent=Os06t0552400-01
Chr06	irgsp1_rep	three_prime_UTR	20949377	20950653	.	-	.	Parent=Os06t0552400-01
Chr06	irgsp1_rep	three_prime_UTR	20949095	20949290	.	-	.	Parent=Os06t0552400-01
Chr06	irgsp1_rep	three_prime_UTR	20946146	20946585	.	-	.	Parent=Os06t0552400-01
Chr06	irgsp1_rep	mRNA	20946146	20952655	.	-	.	ID=Os06t0552400-02;Name=Os06t0552400-02;Locus_id=Os06g0552400;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK121387 (DDBJ%2C Best hit);ORF_evidence=NP_001147080.1 (RefSeq);GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C FYVE-type (IPR000306),Ysc84 actin-binding domain (IPR007461),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C FYVE-related (IPR017455);NIAS_FLcDNA=J023127P05;Expression=AK121387;TENOR=Os06t0552400-02;KEGG=Os06t0552400-02
Chr06	irgsp1_rep	five_prime_UTR	20952582	20952655	.	-	.	Parent=Os06t0552400-02
Chr06	irgsp1_rep	CDS	20952393	20952581	.	-	0	Parent=Os06t0552400-02
Chr06	irgsp1_rep	CDS	20950792	20951652	.	-	0	Parent=Os06t0552400-02
Chr06	irgsp1_rep	CDS	20949377	20949577	.	-	0	Parent=Os06t0552400-02
Chr06	irgsp1_rep	CDS	20949095	20949290	.	-	0	Parent=Os06t0552400-02
Chr06	irgsp1_rep	CDS	20946383	20946585	.	-	2	Parent=Os06t0552400-02
Chr06	irgsp1_rep	three_prime_UTR	20946146	20946382	.	-	.	Parent=Os06t0552400-02
Chr06	irgsp1_rep	mRNA	20960706	20961819	.	+	.	ID=Os06t0552700-01;Name=Os06t0552700-01;Locus_id=Os06g0552700;CGSNL Gene Symbol=AM25;CGSNL Gene Name=ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 25;Oryzabase Gene Symbol Synonym(s)=AM25%2C OsNIP1%3B4%2C NIP1-4%2C OsNIP1.4%2C NIP1.4;Oryzabase Gene Name Synonym(s)=Aquaporin NIP1-4%2C NOD26-like intrinsic protein 1-4;Note=Arbuscular mycorrhizal specific marker 25.;Transcript_evidence=Q5Z9E2 (UniProt);ORF_evidence=Q5Z9E2 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: water transport (GO:0006833),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Aquaporin (IPR012269),Major intrinsic protein%2C conserved site (IPR022357),Aquaporin-like (IPR023271);Oryzabase=8190;TENOR=Os06t0552700-01
Chr06	irgsp1_rep	CDS	20960706	20960879	.	+	0	Parent=Os06t0552700-01
Chr06	irgsp1_rep	CDS	20960990	20961409	.	+	0	Parent=Os06t0552700-01
Chr06	irgsp1_rep	CDS	20961483	20961544	.	+	0	Parent=Os06t0552700-01
Chr06	irgsp1_rep	CDS	20961654	20961819	.	+	1	Parent=Os06t0552700-01
Chr06	irgsp1_rep	mRNA	20961102	20961407	.	-	.	ID=Os06t0552800-00;Name=Os06t0552800-00;Locus_id=Os06g0552800;Note=Hypothetical protein.;Transcript_evidence=BT061568 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0552800-00
Chr06	irgsp1_rep	five_prime_UTR	20961407	20961407	.	-	.	Parent=Os06t0552800-00
Chr06	irgsp1_rep	CDS	20961102	20961406	.	-	0	Parent=Os06t0552800-00
Chr06	irgsp1_rep	mRNA	20971660	20974252	.	-	.	ID=Os06t0552900-00;Name=Os06t0552900-00;Locus_id=Os06g0552900;CGSNL Gene Symbol=FTL12;CGSNL Gene Name=FLOWERING TIME LIKE GENE 12;Oryzabase Gene Symbol Synonym(s)=OsFTL12%2C FT-L11;Oryzabase Gene Name Synonym(s)=FT-like gene 12%2C FT-like gene 11;Note=Similar to SP3D.;Transcript_evidence=CT836192 (DDBJ%2C Best hit);ORF_evidence=A8WET3 (UniProt);InterPro=Phosphatidylethanolamine-binding%2C conserved site (IPR001858),Phosphatidylethanolamine-binding protein PEBP (IPR008914);Oryzabase=11233;TENOR=Os06t0552900-00;KEGG=Os06t0552900-00
Chr06	irgsp1_rep	five_prime_UTR	20974159	20974252	.	-	.	Parent=Os06t0552900-00
Chr06	irgsp1_rep	CDS	20973967	20974158	.	-	0	Parent=Os06t0552900-00
Chr06	irgsp1_rep	CDS	20973529	20973590	.	-	0	Parent=Os06t0552900-00
Chr06	irgsp1_rep	CDS	20973401	20973441	.	-	1	Parent=Os06t0552900-00
Chr06	irgsp1_rep	CDS	20971969	20972195	.	-	2	Parent=Os06t0552900-00
Chr06	irgsp1_rep	three_prime_UTR	20971884	20971968	.	-	.	Parent=Os06t0552900-00
Chr06	irgsp1_rep	three_prime_UTR	20971660	20971837	.	-	.	Parent=Os06t0552900-00
Chr06	irgsp1_rep	mRNA	20996758	20997391	.	+	.	ID=Os06t0553001-00;Name=Os06t0553001-00;Locus_id=Os06g0553001;Note=Conserved hypothetical protein.;Transcript_evidence=EU972049 (DDBJ);ORF_evidence=B6U484 (UniProt);TENOR=Os06t0553001-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	20996758	20997145	.	+	.	Parent=Os06t0553001-00
Chr06	irgsp1_rep	CDS	20997146	20997391	.	+	0	Parent=Os06t0553001-00
Chr06	irgsp1_rep	mRNA	20998086	20998850	.	-	.	ID=Os06t0553100-01;Name=Os06t0553100-01;Locus_id=Os06g0553100;CGSNL Gene Symbol=HSFC2B;CGSNL Gene Name=HEAT STRESS TRANSCRIPTION FACTOR C2B;Oryzabase Gene Symbol Synonym(s)=HSfC2b%2C OsHsfC2b%2C OsHsf-16%2C HSF16%2C OsHSF16;Oryzabase Gene Name Synonym(s)=Heat stress transcription factor C2b%2C Heat stress transcription factor C-2b%2C Heat stress transcription factor 16;Note=Similar to Heat stress transcription factor C-2b.;Transcript_evidence=AK241254 (DDBJ%2C Best hit);ORF_evidence=Q0DBL6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Heat shock factor (HSF)-type%2C DNA-binding (IPR000232),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=J065130H10;Oryzabase=8571;TENOR=Os06t0553100-01;KEGG=Os06t0553100-01
Chr06	irgsp1_rep	five_prime_UTR	20998723	20998850	.	-	.	Parent=Os06t0553100-01
Chr06	irgsp1_rep	CDS	20998174	20998722	.	-	0	Parent=Os06t0553100-01
Chr06	irgsp1_rep	three_prime_UTR	20998086	20998173	.	-	.	Parent=Os06t0553100-01
Chr06	irgsp1_rep	mRNA	21006766	21008156	.	-	.	ID=Os06t0553200-01;Name=Os06t0553200-01;Locus_id=Os06g0553200;CGSNL Gene Symbol=NRFG2;CGSNL Gene Name=NEO-TETRAPLOID RICE FERTILITY RELATED GENE 2;Oryzabase Gene Symbol Synonym(s)=PFL%2C OsNRFG2;Oryzabase Gene Name Synonym(s)=Protodermal Factor Like%2C neo-tetraploid rice fertility related gene 2;Note=Similar to Meiosis 5.;Transcript_evidence=AK104528 (DDBJ%2C Best hit),AK060896 (DDBJ%2C Best hit),AK104638 (DDBJ%2C Best hit),AK121675 (DDBJ%2C Best hit);ORF_evidence=B6SUD3 (UniProt);NIAS_FLcDNA=006-304-A03,001-035-C12,006-310-E03,J033068F09;Oryzabase=9289;TENOR=Os06t0553200-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	21008093	21008156	.	-	.	Parent=Os06t0553200-01
Chr06	irgsp1_rep	CDS	21007981	21008092	.	-	0	Parent=Os06t0553200-01
Chr06	irgsp1_rep	CDS	21007784	21007895	.	-	2	Parent=Os06t0553200-01
Chr06	irgsp1_rep	CDS	21007118	21007454	.	-	1	Parent=Os06t0553200-01
Chr06	irgsp1_rep	three_prime_UTR	21006766	21007117	.	-	.	Parent=Os06t0553200-01
Chr06	irgsp1_rep	mRNA	21040598	21041308	.	-	.	ID=Os06t0553550-00;Name=Os06t0553550-00;Locus_id=Os06g0553550;Note=Conserved hypothetical protein.;Transcript_evidence=EU945783 (DDBJ);ORF_evidence=C0PA66 (UniProt);TENOR=Os06t0553550-00
Chr06	irgsp1_rep	CDS	21040598	21041308	.	-	0	Parent=Os06t0553550-00
Chr06	irgsp1_rep	mRNA	21041156	21041867	.	+	.	ID=Os06t0553700-00;Name=Os06t0553700-00;Locus_id=Os06g0553700;CGSNL Gene Symbol=ERF122;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 122;Oryzabase Gene Symbol Synonym(s)=OsERF#122%2C OsERF122%2C AP2/EREBP#056%2C AP2/EREBP56;Oryzabase Gene Name Synonym(s)=ethylene response factor 122%2C APETALA2/ethylene-responsive element binding protein 56;Note=Conserved hypothetical protein.;Transcript_evidence=CT836191 (DDBJ%2C Best hit);ORF_evidence=Q5Z9C9 (UniProt);Oryzabase=10617;TENOR=Os06t0553700-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	21041156	21041195	.	+	.	Parent=Os06t0553700-00
Chr06	irgsp1_rep	CDS	21041196	21041537	.	+	0	Parent=Os06t0553700-00
Chr06	irgsp1_rep	three_prime_UTR	21041538	21041867	.	+	.	Parent=Os06t0553700-00
Chr06	irgsp1_rep	mRNA	21048725	21049747	.	-	.	ID=Os06t0553800-01;Name=Os06t0553800-01;Locus_id=Os06g0553800;CGSNL Gene Symbol=NRFG3;CGSNL Gene Name=NEO-TETRAPLOID RICE FERTILITY RELATED GENE 3;Oryzabase Gene Symbol Synonym(s)=OsENODL17%2C ENODL17%2C OsNRFG3;Oryzabase Gene Name Synonym(s)=early nodulin-like protein 17%2C neo-tetraploid rice fertility related gene 3;Note=Cupredoxin domain containing protein.;Transcript_evidence=AK072932 (DDBJ%2C Best hit);ORF_evidence=Q5Z9C7 (UniProt);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);NIAS_FLcDNA=J023144J15;Oryzabase=9742;Expression=AK072932;TENOR=Os06t0553800-01;KEGG=Os06t0553800-01
Chr06	irgsp1_rep	five_prime_UTR	21049668	21049747	.	-	.	Parent=Os06t0553800-01
Chr06	irgsp1_rep	CDS	21049448	21049667	.	-	0	Parent=Os06t0553800-01
Chr06	irgsp1_rep	CDS	21049153	21049354	.	-	2	Parent=Os06t0553800-01
Chr06	irgsp1_rep	CDS	21048927	21049062	.	-	1	Parent=Os06t0553800-01
Chr06	irgsp1_rep	three_prime_UTR	21048725	21048926	.	-	.	Parent=Os06t0553800-01
Chr06	irgsp1_rep	mRNA	21060826	21061895	.	+	.	ID=Os06t0554100-00;Name=Os06t0554100-00;Locus_id=Os06g0554100;Note=Hypothetical conserved gene.;Transcript_evidence=CT836317 (DDBJ%2C Best hit);ORF_evidence=Q5Z9C5 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C SWIM-type (IPR007527),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);TENOR=Os06t0554100-00;KEGG=Os06t0554100-00
Chr06	irgsp1_rep	five_prime_UTR	21060826	21061005	.	+	.	Parent=Os06t0554100-00
Chr06	irgsp1_rep	CDS	21061006	21061797	.	+	0	Parent=Os06t0554100-00
Chr06	irgsp1_rep	three_prime_UTR	21061798	21061895	.	+	.	Parent=Os06t0554100-00
Chr06	irgsp1_rep	mRNA	21060987	21063976	.	-	.	ID=Os06t0554200-00;Name=Os06t0554200-00;Locus_id=Os06g0554200;Note=Similar to F20B17.20.;Transcript_evidence=AK363742 (DDBJ);ORF_evidence=XP_002889325.1 (RefSeq);InterPro=Protein of unknown function DUF1677%2C plant (IPR012876);TENOR=Os06t0554200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	21063533	21063976	.	-	0	Parent=Os06t0554200-00
Chr06	irgsp1_rep	CDS	21060987	21061583	.	-	0	Parent=Os06t0554200-00
Chr06	irgsp1_rep	mRNA	21066262	21069848	.	-	.	ID=Os06t0554300-01;Name=Os06t0554300-01;Locus_id=Os06g0554300;Note=Conserved hypothetical protein.;Transcript_evidence=AK070137 (DDBJ%2C Best hit),AK103962 (DDBJ%2C Best hit);ORF_evidence=B8B3L6 (UniProt);NIAS_FLcDNA=J023042K04,001-015-F02;TENOR=Os06t0554300-01
Chr06	irgsp1_rep	five_prime_UTR	21069786	21069848	.	-	.	Parent=Os06t0554300-01
Chr06	irgsp1_rep	five_prime_UTR	21067815	21067825	.	-	.	Parent=Os06t0554300-01
Chr06	irgsp1_rep	CDS	21066546	21067814	.	-	0	Parent=Os06t0554300-01
Chr06	irgsp1_rep	three_prime_UTR	21066262	21066545	.	-	.	Parent=Os06t0554300-01
Chr06	irgsp1_rep	mRNA	21090109	21091328	.	-	.	ID=Os06t0554600-00;Name=Os06t0554600-00;Locus_id=Os06g0554600;Note=Conserved hypothetical protein.;Transcript_evidence=CT836250 (DDBJ%2C Best hit);ORF_evidence=NP_001057848.1 (RefSeq);TENOR=Os06t0554600-00;KEGG=Os06t0554600-00
Chr06	irgsp1_rep	five_prime_UTR	21091220	21091328	.	-	.	Parent=Os06t0554600-00
Chr06	irgsp1_rep	CDS	21090371	21091219	.	-	0	Parent=Os06t0554600-00
Chr06	irgsp1_rep	three_prime_UTR	21090109	21090370	.	-	.	Parent=Os06t0554600-00
Chr06	irgsp1_rep	mRNA	21108625	21112671	.	+	.	ID=Os06t0554700-01;Name=Os06t0554700-01;Locus_id=Os06g0554700;CGSNL Gene Symbol=KIN14M;CGSNL Gene Name=KINESIN MOTOR DOMAIN CONTAINING PROTEIN 14M;Oryzabase Gene Symbol Synonym(s)=OsKIN14M;Oryzabase Gene Name Synonym(s)=kinesin motor domain containing protein 14M;Note=Similar to kinesin motor protein-related.;Transcript_evidence=AK064200 (DDBJ%2C Best hit);ORF_evidence=NP_176551.3 (RefSeq);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752);NIAS_FLcDNA=002-104-D10;Oryzabase=23709;TENOR=Os06t0554700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	21108625	21108794	.	+	0	Parent=Os06t0554700-01
Chr06	irgsp1_rep	CDS	21109279	21109443	.	+	1	Parent=Os06t0554700-01
Chr06	irgsp1_rep	CDS	21109535	21109557	.	+	1	Parent=Os06t0554700-01
Chr06	irgsp1_rep	CDS	21109651	21109788	.	+	2	Parent=Os06t0554700-01
Chr06	irgsp1_rep	CDS	21109940	21110103	.	+	2	Parent=Os06t0554700-01
Chr06	irgsp1_rep	CDS	21110379	21110935	.	+	0	Parent=Os06t0554700-01
Chr06	irgsp1_rep	CDS	21111183	21111286	.	+	1	Parent=Os06t0554700-01
Chr06	irgsp1_rep	CDS	21112388	21112470	.	+	2	Parent=Os06t0554700-01
Chr06	irgsp1_rep	three_prime_UTR	21112471	21112671	.	+	.	Parent=Os06t0554700-01
Chr06	irgsp1_rep	mRNA	21113234	21120648	.	-	.	ID=Os06t0554800-01;Name=Os06t0554800-01;Locus_id=Os06g0554800;CGSNL Gene Symbol=PDR12;CGSNL Gene Name=PLEIOTROPIC DRUG RESISTANCE 12;Oryzabase Gene Symbol Synonym(s)=OsABCG42%2C OsPDR12%2C OsABCG42_1%2C OsABCG42_2;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 42%2C pleiotropic drug resistance 12;Note=Similar to ABC transporter (PDR5-like) isolog (PDR1 ABC transporter).;Transcript_evidence=AK121182 (DDBJ%2C Best hit);ORF_evidence=Q5Z9S8-2 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC-2 type transporter (IPR013525),Plant PDR ABC transporter associated (IPR013581);NIAS_FLcDNA=J023084H11;Oryzabase=12016;Expression=AK121182;TENOR=Os06t0554800-01;KEGG=Os06t0554800-01
Chr06	irgsp1_rep	five_prime_UTR	21120106	21120648	.	-	.	Parent=Os06t0554800-01
Chr06	irgsp1_rep	CDS	21120103	21120105	.	-	0	Parent=Os06t0554800-01
Chr06	irgsp1_rep	CDS	21119797	21119887	.	-	0	Parent=Os06t0554800-01
Chr06	irgsp1_rep	CDS	21118167	21118468	.	-	2	Parent=Os06t0554800-01
Chr06	irgsp1_rep	CDS	21117789	21118070	.	-	0	Parent=Os06t0554800-01
Chr06	irgsp1_rep	CDS	21117387	21117703	.	-	0	Parent=Os06t0554800-01
Chr06	irgsp1_rep	CDS	21117143	21117303	.	-	1	Parent=Os06t0554800-01
Chr06	irgsp1_rep	CDS	21116930	21117045	.	-	2	Parent=Os06t0554800-01
Chr06	irgsp1_rep	CDS	21116600	21116756	.	-	0	Parent=Os06t0554800-01
Chr06	irgsp1_rep	CDS	21116399	21116515	.	-	2	Parent=Os06t0554800-01
Chr06	irgsp1_rep	CDS	21116141	21116316	.	-	2	Parent=Os06t0554800-01
Chr06	irgsp1_rep	CDS	21115687	21116034	.	-	0	Parent=Os06t0554800-01
Chr06	irgsp1_rep	CDS	21115189	21115479	.	-	0	Parent=Os06t0554800-01
Chr06	irgsp1_rep	CDS	21115025	21115108	.	-	0	Parent=Os06t0554800-01
Chr06	irgsp1_rep	CDS	21114784	21114917	.	-	0	Parent=Os06t0554800-01
Chr06	irgsp1_rep	CDS	21114448	21114675	.	-	1	Parent=Os06t0554800-01
Chr06	irgsp1_rep	CDS	21114194	21114365	.	-	1	Parent=Os06t0554800-01
Chr06	irgsp1_rep	CDS	21113860	21114114	.	-	0	Parent=Os06t0554800-01
Chr06	irgsp1_rep	CDS	21113502	21113771	.	-	0	Parent=Os06t0554800-01
Chr06	irgsp1_rep	three_prime_UTR	21113234	21113501	.	-	.	Parent=Os06t0554800-01
Chr06	irgsp1_rep	mRNA	21113264	21115095	.	-	.	ID=Os06t0554800-02;Name=Os06t0554800-02;Locus_id=Os06g0554800;CGSNL Gene Symbol=PDR12;CGSNL Gene Name=PLEIOTROPIC DRUG RESISTANCE 12;Oryzabase Gene Symbol Synonym(s)=OsABCG42%2C OsPDR12%2C OsABCG42_1%2C OsABCG42_2;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 42%2C pleiotropic drug resistance 12;Note=Similar to Isoform 2 of Pleiotropic drug resistance protein 12.;Transcript_evidence=AK058448 (DDBJ%2C Best hit);ORF_evidence=B9FTR2 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=ABC-2 type transporter (IPR013525);NIAS_FLcDNA=001-015-G08;Oryzabase=12016;Expression=AK058448;TENOR=Os06t0554800-02;KEGG=Os06t0554800-02
Chr06	irgsp1_rep	five_prime_UTR	21115094	21115095	.	-	.	Parent=Os06t0554800-02
Chr06	irgsp1_rep	CDS	21115025	21115093	.	-	0	Parent=Os06t0554800-02
Chr06	irgsp1_rep	CDS	21114784	21114917	.	-	0	Parent=Os06t0554800-02
Chr06	irgsp1_rep	CDS	21114448	21114675	.	-	1	Parent=Os06t0554800-02
Chr06	irgsp1_rep	CDS	21114194	21114365	.	-	1	Parent=Os06t0554800-02
Chr06	irgsp1_rep	CDS	21113860	21114114	.	-	0	Parent=Os06t0554800-02
Chr06	irgsp1_rep	CDS	21113502	21113771	.	-	0	Parent=Os06t0554800-02
Chr06	irgsp1_rep	three_prime_UTR	21113264	21113501	.	-	.	Parent=Os06t0554800-02
Chr06	irgsp1_rep	mRNA	21122083	21126059	.	+	.	ID=Os06t0555101-00;Name=Os06t0555101-00;Locus_id=Os06g0555101;Note=Hypothetical gene.;Transcript_evidence=BT068271 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0555101-00;KEGG=Os06t0555101-00
Chr06	irgsp1_rep	five_prime_UTR	21122083	21122141	.	+	.	Parent=Os06t0555101-00
Chr06	irgsp1_rep	CDS	21122142	21122501	.	+	0	Parent=Os06t0555101-00
Chr06	irgsp1_rep	CDS	21125777	21125992	.	+	0	Parent=Os06t0555101-00
Chr06	irgsp1_rep	three_prime_UTR	21125993	21126059	.	+	.	Parent=Os06t0555101-00
Chr06	irgsp1_rep	mRNA	21163415	21167131	.	+	.	ID=Os06t0555400-01;Name=Os06t0555400-01;Locus_id=Os06g0555400;Note=Similar to 40S ribosomal protein S19-like.;Transcript_evidence=AK059383 (DDBJ%2C Best hit);ORF_evidence=B8B3L8 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S24e (IPR001976),Nucleotide-binding%2C alpha-beta plait (IPR012677),Ribosomal protein L23/L15e (IPR012678),Ribosomal S24e conserved site (IPR018098);NIAS_FLcDNA=001-026-G06;Expression=AK059383;TENOR=Os06t0555400-01;KEGG=Os06t0555400-01
Chr06	irgsp1_rep	five_prime_UTR	21163415	21163416	.	+	.	Parent=Os06t0555400-01
Chr06	irgsp1_rep	CDS	21163417	21163473	.	+	0	Parent=Os06t0555400-01
Chr06	irgsp1_rep	CDS	21163562	21163732	.	+	0	Parent=Os06t0555400-01
Chr06	irgsp1_rep	CDS	21166651	21166737	.	+	0	Parent=Os06t0555400-01
Chr06	irgsp1_rep	CDS	21166864	21166896	.	+	0	Parent=Os06t0555400-01
Chr06	irgsp1_rep	three_prime_UTR	21166897	21167131	.	+	.	Parent=Os06t0555400-01
Chr06	irgsp1_rep	mRNA	21167671	21171548	.	-	.	ID=Os06t0555500-01;Name=Os06t0555500-01;Locus_id=Os06g0555500;Note=Initiator tRNA phosphoribosyl transferase family protein.;Transcript_evidence=AK102375 (DDBJ%2C Best hit);ORF_evidence=XP_002879880.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring pentosyl groups (GO:0016763);InterPro=Initiator tRNA phosphoribosyl transferase (IPR007306),tRNA A64-2'-O-ribosylphosphate transferase%2C RIT1 (IPR016519);NIAS_FLcDNA=J033091P04;Expression=AK102375;TENOR=Os06t0555500-01;KEGG=Os06t0555500-01
Chr06	irgsp1_rep	five_prime_UTR	21171493	21171548	.	-	.	Parent=Os06t0555500-01
Chr06	irgsp1_rep	CDS	21171162	21171492	.	-	0	Parent=Os06t0555500-01
Chr06	irgsp1_rep	CDS	21170400	21170539	.	-	2	Parent=Os06t0555500-01
Chr06	irgsp1_rep	CDS	21169207	21169921	.	-	0	Parent=Os06t0555500-01
Chr06	irgsp1_rep	CDS	21168758	21168861	.	-	2	Parent=Os06t0555500-01
Chr06	irgsp1_rep	CDS	21168571	21168679	.	-	0	Parent=Os06t0555500-01
Chr06	irgsp1_rep	CDS	21168374	21168433	.	-	2	Parent=Os06t0555500-01
Chr06	irgsp1_rep	CDS	21167941	21168116	.	-	2	Parent=Os06t0555500-01
Chr06	irgsp1_rep	three_prime_UTR	21167671	21167940	.	-	.	Parent=Os06t0555500-01
Chr06	irgsp1_rep	mRNA	21167583	21171514	.	-	.	ID=Os06t0555500-02;Name=Os06t0555500-02;Locus_id=Os06g0555500;Note=Initiator tRNA phosphoribosyl transferase family protein.;Transcript_evidence=AK106546 (DDBJ%2C Best hit);ORF_evidence=XP_002879880.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring pentosyl groups (GO:0016763);InterPro=Initiator tRNA phosphoribosyl transferase (IPR007306),tRNA A64-2'-O-ribosylphosphate transferase%2C RIT1 (IPR016519);NIAS_FLcDNA=002-108-F04;Expression=AK106546;TENOR=Os06t0555500-02;KEGG=Os06t0555500-02
Chr06	irgsp1_rep	five_prime_UTR	21171493	21171514	.	-	.	Parent=Os06t0555500-02
Chr06	irgsp1_rep	CDS	21171162	21171492	.	-	0	Parent=Os06t0555500-02
Chr06	irgsp1_rep	CDS	21170400	21170539	.	-	2	Parent=Os06t0555500-02
Chr06	irgsp1_rep	CDS	21169207	21169921	.	-	0	Parent=Os06t0555500-02
Chr06	irgsp1_rep	CDS	21168758	21168861	.	-	2	Parent=Os06t0555500-02
Chr06	irgsp1_rep	CDS	21168571	21168679	.	-	0	Parent=Os06t0555500-02
Chr06	irgsp1_rep	CDS	21168374	21168433	.	-	2	Parent=Os06t0555500-02
Chr06	irgsp1_rep	CDS	21167941	21168116	.	-	2	Parent=Os06t0555500-02
Chr06	irgsp1_rep	three_prime_UTR	21167583	21167940	.	-	.	Parent=Os06t0555500-02
Chr06	irgsp1_rep	mRNA	21184906	21185604	.	-	.	ID=Os06t0555900-01;Name=Os06t0555900-01;Locus_id=Os06g0555900;Note=Hypothetical gene.;Transcript_evidence=AK064273 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-105-E12;Expression=AK064273;TENOR=Os06t0555900-01;KEGG=Os06t0555900-01
Chr06	irgsp1_rep	five_prime_UTR	21185604	21185604	.	-	.	Parent=Os06t0555900-01
Chr06	irgsp1_rep	CDS	21185259	21185603	.	-	0	Parent=Os06t0555900-01
Chr06	irgsp1_rep	three_prime_UTR	21184906	21185258	.	-	.	Parent=Os06t0555900-01
Chr06	irgsp1_rep	mRNA	21185223	21192033	.	+	.	ID=Os06t0556000-01;Name=Os06t0556000-01;Locus_id=Os06g0556000;RAP-DB Gene Symbol Synonym(s)=OsAAP12A%2C AAP12A%2C OsAAP3%2C AAP3;RAP-DB Gene Name Synonym(s)=amino acid permease 12A%2C amino acid permease 3%2C amino acid/auxin permease 3;CGSNL Gene Symbol=AAP12A;CGSNL Gene Name=AMINO ACID PERMEASE 12A;Oryzabase Gene Symbol Synonym(s)=OsAAP12A%2C OsAAP3%2C AAP3;Oryzabase Gene Name Synonym(s)=amino acid permease 12A%2C amino acid permease 3%2C amino acid/auxin permease 3;Note=Amino acid permease%2C Transport of amino acids;Transcript_evidence=AK102763;ORF_evidence=Q5Z9R9;InterPro=Amino acid transporter%2C transmembrane domain (IPR013057);NIAS_FLcDNA=J033107D14;Manual Curation=September 3%2C 2015;Literature_PMID=25907566,23166615;Oryzabase=18488;TENOR=Os06t0556000-01
Chr06	irgsp1_rep	five_prime_UTR	21185223	21185311	.	+	.	Parent=Os06t0556000-01
Chr06	irgsp1_rep	CDS	21185312	21185441	.	+	0	Parent=Os06t0556000-01
Chr06	irgsp1_rep	CDS	21189662	21189895	.	+	2	Parent=Os06t0556000-01
Chr06	irgsp1_rep	CDS	21190255	21190348	.	+	2	Parent=Os06t0556000-01
Chr06	irgsp1_rep	CDS	21190473	21190690	.	+	1	Parent=Os06t0556000-01
Chr06	irgsp1_rep	CDS	21190776	21190915	.	+	2	Parent=Os06t0556000-01
Chr06	irgsp1_rep	CDS	21191051	21191698	.	+	0	Parent=Os06t0556000-01
Chr06	irgsp1_rep	three_prime_UTR	21191699	21192033	.	+	.	Parent=Os06t0556000-01
Chr06	irgsp1_rep	mRNA	21189665	21191684	.	-	.	ID=Os06t0556101-00;Name=Os06t0556101-00;Locus_id=Os06g0556101;Note=Hypothetical protein.;Transcript_evidence=tplb0036o08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0556101-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	21191684	21191684	.	-	.	Parent=Os06t0556101-00
Chr06	irgsp1_rep	CDS	21191054	21191683	.	-	0	Parent=Os06t0556101-00
Chr06	irgsp1_rep	CDS	21190912	21190920	.	-	0	Parent=Os06t0556101-00
Chr06	irgsp1_rep	three_prime_UTR	21190783	21190911	.	-	.	Parent=Os06t0556101-00
Chr06	irgsp1_rep	three_prime_UTR	21190492	21190700	.	-	.	Parent=Os06t0556101-00
Chr06	irgsp1_rep	three_prime_UTR	21190226	21190368	.	-	.	Parent=Os06t0556101-00
Chr06	irgsp1_rep	three_prime_UTR	21189665	21189866	.	-	.	Parent=Os06t0556101-00
Chr06	irgsp1_rep	mRNA	21211928	21213624	.	-	.	ID=Os06t0556150-00;Name=Os06t0556150-00;Locus_id=Os06g0556150;Note=Hypothetical protein.;Transcript_evidence=tplb0036o08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0556150-00
Chr06	irgsp1_rep	five_prime_UTR	21213584	21213624	.	-	.	Parent=Os06t0556150-00
Chr06	irgsp1_rep	CDS	21213167	21213583	.	-	0	Parent=Os06t0556150-00
Chr06	irgsp1_rep	three_prime_UTR	21212661	21213166	.	-	.	Parent=Os06t0556150-00
Chr06	irgsp1_rep	three_prime_UTR	21211928	21212261	.	-	.	Parent=Os06t0556150-00
Chr06	irgsp1_rep	mRNA	21211987	21213846	.	+	.	ID=Os06t0556200-01;Name=Os06t0556200-01;Locus_id=Os06g0556200;CGSNL Gene Symbol=AAP12B;CGSNL Gene Name=AMINO ACID PERMEASE 12B;Oryzabase Gene Symbol Synonym(s)=OsAAP12B%2C OsAAP18%2C AAP18;Oryzabase Gene Name Synonym(s)=amino acid permease 12B%2C amino acid permease 18%2C amino acid/auxin permease 18;Note=Similar to amino acid permease 1.;Transcript_evidence=AK071510 (DDBJ%2C Best hit);ORF_evidence=NP_001149517.1 (RefSeq);NIAS_FLcDNA=J023095G15;Oryzabase=18502;TENOR=Os06t0556200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	21211987	21212256	.	+	0	Parent=Os06t0556200-01
Chr06	irgsp1_rep	CDS	21212651	21213247	.	+	0	Parent=Os06t0556200-01
Chr06	irgsp1_rep	CDS	21213564	21213638	.	+	0	Parent=Os06t0556200-01
Chr06	irgsp1_rep	three_prime_UTR	21213639	21213846	.	+	.	Parent=Os06t0556200-01
Chr06	irgsp1_rep	mRNA	21213920	21218158	.	-	.	ID=Os06t0556300-01;Name=Os06t0556300-01;Locus_id=Os06g0556300;Oryzabase Gene Symbol Synonym(s)=OsFbox313%2C Os_F0104;Oryzabase Gene Name Synonym(s)=F-box protein 313;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK101552 (DDBJ%2C Best hit),AK063985 (DDBJ%2C Best hit);ORF_evidence=B8B3V4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033048O21,001-124-D09;Oryzabase=17092;Expression=AK101552;TENOR=Os06t0556300-01;KEGG=Os06t0556300-01
Chr06	irgsp1_rep	five_prime_UTR	21218039	21218158	.	-	.	Parent=Os06t0556300-01
Chr06	irgsp1_rep	five_prime_UTR	21217918	21217949	.	-	.	Parent=Os06t0556300-01
Chr06	irgsp1_rep	CDS	21217027	21217917	.	-	0	Parent=Os06t0556300-01
Chr06	irgsp1_rep	CDS	21216396	21216551	.	-	0	Parent=Os06t0556300-01
Chr06	irgsp1_rep	CDS	21216100	21216298	.	-	0	Parent=Os06t0556300-01
Chr06	irgsp1_rep	CDS	21214237	21214262	.	-	2	Parent=Os06t0556300-01
Chr06	irgsp1_rep	three_prime_UTR	21213920	21214236	.	-	.	Parent=Os06t0556300-01
Chr06	irgsp1_rep	mRNA	21222684	21223385	.	-	.	ID=Os06t0556450-00;Name=Os06t0556450-00;Locus_id=Os06g0556450;Note=Non-protein coding transcript.;Transcript_evidence=EU950242 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0556450-00
Chr06	irgsp1_rep	exon	21223010	21223385	.	-	.	Parent=Os06t0556450-00
Chr06	irgsp1_rep	exon	21222684	21222932	.	-	.	Parent=Os06t0556450-00
Chr06	irgsp1_rep	mRNA	21216098	21217938	.	+	.	ID=Os06t0556451-00;Name=Os06t0556451-00;Locus_id=Os06g0556451;Note=Hypothetical protein.;Transcript_evidence=tplb0026g09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0556451-00
Chr06	irgsp1_rep	five_prime_UTR	21216098	21216266	.	+	.	Parent=Os06t0556451-00
Chr06	irgsp1_rep	five_prime_UTR	21216367	21216636	.	+	.	Parent=Os06t0556451-00
Chr06	irgsp1_rep	five_prime_UTR	21217081	21217216	.	+	.	Parent=Os06t0556451-00
Chr06	irgsp1_rep	CDS	21217217	21217723	.	+	0	Parent=Os06t0556451-00
Chr06	irgsp1_rep	three_prime_UTR	21217724	21217938	.	+	.	Parent=Os06t0556451-00
Chr06	irgsp1_rep	mRNA	21222683	21223744	.	+	.	ID=Os06t0556600-01;Name=Os06t0556600-01;Locus_id=Os06g0556600;Note=Similar to Pollen allergen Phl p 11.;Transcript_evidence=AK072511 (DDBJ%2C Best hit);ORF_evidence=NP_001148443.1 (RefSeq);GO=Cellular Component: extracellular space (GO:0005615);InterPro=Allergen Ole e 1%2C conserved site (IPR006040),Pollen Ole e 1 allergen/extensin (IPR006041);NIAS_FLcDNA=J023132A12;Expression=AK072511;TENOR=Os06t0556600-01;KEGG=Os06t0556600-01
Chr06	irgsp1_rep	five_prime_UTR	21222683	21222762	.	+	.	Parent=Os06t0556600-01
Chr06	irgsp1_rep	CDS	21222763	21222949	.	+	0	Parent=Os06t0556600-01
Chr06	irgsp1_rep	CDS	21223037	21223377	.	+	2	Parent=Os06t0556600-01
Chr06	irgsp1_rep	three_prime_UTR	21223378	21223744	.	+	.	Parent=Os06t0556600-01
Chr06	irgsp1_rep	mRNA	21255242	21259517	.	+	.	ID=Os06t0557100-01;Name=Os06t0557100-01;Locus_id=Os06g0557100;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK111851 (DDBJ%2C Best hit);ORF_evidence=A2YE19 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023150C23;Expression=AK111851;TENOR=Os06t0557100-01;KEGG=Os06t0557100-01
Chr06	irgsp1_rep	five_prime_UTR	21255242	21255310	.	+	.	Parent=Os06t0557100-01
Chr06	irgsp1_rep	CDS	21255311	21257966	.	+	0	Parent=Os06t0557100-01
Chr06	irgsp1_rep	CDS	21258133	21258602	.	+	2	Parent=Os06t0557100-01
Chr06	irgsp1_rep	three_prime_UTR	21258603	21258758	.	+	.	Parent=Os06t0557100-01
Chr06	irgsp1_rep	three_prime_UTR	21258897	21259517	.	+	.	Parent=Os06t0557100-01
Chr06	irgsp1_rep	mRNA	21255245	21258828	.	+	.	ID=Os06t0557100-02;Name=Os06t0557100-02;Locus_id=Os06g0557100;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK119892 (DDBJ%2C Best hit);ORF_evidence=A2YE19 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=002-180-A10;Expression=AK119892;TENOR=Os06t0557100-02;KEGG=Os06t0557100-02
Chr06	irgsp1_rep	five_prime_UTR	21255245	21255310	.	+	.	Parent=Os06t0557100-02
Chr06	irgsp1_rep	CDS	21255311	21257966	.	+	0	Parent=Os06t0557100-02
Chr06	irgsp1_rep	CDS	21258133	21258602	.	+	2	Parent=Os06t0557100-02
Chr06	irgsp1_rep	three_prime_UTR	21258603	21258828	.	+	.	Parent=Os06t0557100-02
Chr06	irgsp1_rep	mRNA	21258050	21258648	.	-	.	ID=Os06t0557200-01;Name=Os06t0557200-01;Locus_id=Os06g0557200;Note=Hypothetical protein.;Transcript_evidence=AK063039 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-110-D03;Expression=AK063039;TENOR=Os06t0557200-01;KEGG=Os06t0557200-01
Chr06	irgsp1_rep	five_prime_UTR	21258645	21258648	.	-	.	Parent=Os06t0557200-01
Chr06	irgsp1_rep	CDS	21258120	21258644	.	-	0	Parent=Os06t0557200-01
Chr06	irgsp1_rep	three_prime_UTR	21258050	21258119	.	-	.	Parent=Os06t0557200-01
Chr06	irgsp1_rep	mRNA	21272920	21274683	.	-	.	ID=Os06t0557400-00;Name=Os06t0557400-00;Locus_id=Os06g0557400;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=AK368347 (DDBJ);ORF_evidence=NP_001057860.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);TENOR=Os06t0557400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	21272920	21274683	.	-	0	Parent=Os06t0557400-00
Chr06	irgsp1_rep	mRNA	21278343	21282942	.	-	.	ID=Os06t0557600-01;Name=Os06t0557600-01;Locus_id=Os06g0557600;Note=Hypothetical protein.;Transcript_evidence=AK107835 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-133-H04;TENOR=Os06t0557600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	21282629	21282942	.	-	0	Parent=Os06t0557600-01
Chr06	irgsp1_rep	CDS	21278777	21278825	.	-	1	Parent=Os06t0557600-01
Chr06	irgsp1_rep	three_prime_UTR	21278755	21278776	.	-	.	Parent=Os06t0557600-01
Chr06	irgsp1_rep	three_prime_UTR	21278343	21278651	.	-	.	Parent=Os06t0557600-01
Chr06	irgsp1_rep	mRNA	21279310	21282208	.	+	.	ID=Os06t0557700-01;Name=Os06t0557700-01;Locus_id=Os06g0557700;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK111567 (DDBJ%2C Best hit);ORF_evidence=A2YE21 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013072O11;Oryzabase=18227;TENOR=Os06t0557700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	21279310	21280519	.	+	0	Parent=Os06t0557700-01
Chr06	irgsp1_rep	CDS	21280604	21281692	.	+	2	Parent=Os06t0557700-01
Chr06	irgsp1_rep	CDS	21281770	21281894	.	+	2	Parent=Os06t0557700-01
Chr06	irgsp1_rep	three_prime_UTR	21281895	21282208	.	+	.	Parent=Os06t0557700-01
Chr06	irgsp1_rep	mRNA	21315872	21317578	.	-	.	ID=Os06t0558300-00;Name=Os06t0558300-00;Locus_id=Os06g0558300;Note=Similar to MATE efflux protein-related.;Transcript_evidence=BT063261 (DDBJ);ORF_evidence=E4MXF4 (UniProt);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);TENOR=Os06t0558300-00;KEGG=Os06t0558300-00
Chr06	irgsp1_rep	CDS	21315872	21317578	.	-	0	Parent=Os06t0558300-00
Chr06	irgsp1_rep	mRNA	21343410	21345112	.	-	.	ID=Os06t0558700-01;Name=Os06t0558700-01;Locus_id=Os06g0558700;Note=Poly(A) polymerase%2C RNA-binding region domain containing protein.;Transcript_evidence=AK059039 (DDBJ%2C Best hit);ORF_evidence=Q5Z7G3 (UniProt);GO=Biological Process: RNA 3'-end processing (GO:0031123),Biological Process: RNA polyadenylation (GO:0043631),Cellular Component: nucleus (GO:0005634),Molecular Function: RNA binding (GO:0003723),Molecular Function: polynucleotide adenylyltransferase activity (GO:0004652),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=Poly(A) polymerase%2C RNA-binding domain (IPR007010),Nucleotidyltransferase%2C class I%2C C-terminal-like (IPR011068);NIAS_FLcDNA=001-021-D01;Expression=AK059039;TENOR=Os06t0558700-01;KEGG=Os06t0558700-01
Chr06	irgsp1_rep	five_prime_UTR	21345112	21345112	.	-	.	Parent=Os06t0558700-01
Chr06	irgsp1_rep	CDS	21344224	21345111	.	-	0	Parent=Os06t0558700-01
Chr06	irgsp1_rep	CDS	21344046	21344123	.	-	0	Parent=Os06t0558700-01
Chr06	irgsp1_rep	CDS	21343924	21343947	.	-	0	Parent=Os06t0558700-01
Chr06	irgsp1_rep	three_prime_UTR	21343410	21343923	.	-	.	Parent=Os06t0558700-01
Chr06	irgsp1_rep	mRNA	21346272	21350292	.	-	.	ID=Os06t0558766-00;Name=Os06t0558766-00;Locus_id=Os06g0558766;Note=Similar to predicted protein.;Transcript_evidence=CT834260 (DDBJ%2C Best hit);ORF_evidence=XP_002869239.1 (RefSeq);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: polynucleotide adenylyltransferase activity (GO:0004652),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=Nucleotidyl transferase domain (IPR002934),Poly(A) polymerase%2C central domain (IPR007012);TENOR=Os06t0558766-00;KEGG=Os06t0558766-00 (EC:2.7.7.19)
Chr06	irgsp1_rep	five_prime_UTR	21349723	21350292	.	-	.	Parent=Os06t0558766-00
Chr06	irgsp1_rep	CDS	21349591	21349722	.	-	0	Parent=Os06t0558766-00
Chr06	irgsp1_rep	CDS	21349418	21349495	.	-	0	Parent=Os06t0558766-00
Chr06	irgsp1_rep	CDS	21348920	21349027	.	-	0	Parent=Os06t0558766-00
Chr06	irgsp1_rep	CDS	21347285	21347347	.	-	0	Parent=Os06t0558766-00
Chr06	irgsp1_rep	CDS	21347040	21347201	.	-	0	Parent=Os06t0558766-00
Chr06	irgsp1_rep	CDS	21346399	21346512	.	-	0	Parent=Os06t0558766-00
Chr06	irgsp1_rep	CDS	21346272	21346310	.	-	0	Parent=Os06t0558766-00
Chr06	irgsp1_rep	mRNA	21362857	21363648	.	+	.	ID=Os06t0558900-01;Name=Os06t0558900-01;Locus_id=Os06g0558900;Note=Conserved hypothetical protein.;Transcript_evidence=AK109653 (DDBJ%2C Best hit);ORF_evidence=B8B3V6 (UniProt);NIAS_FLcDNA=002-140-D12;Expression=AK109653;TENOR=Os06t0558900-01;KEGG=Os06t0558900-01
Chr06	irgsp1_rep	five_prime_UTR	21362857	21363008	.	+	.	Parent=Os06t0558900-01
Chr06	irgsp1_rep	CDS	21363009	21363392	.	+	0	Parent=Os06t0558900-01
Chr06	irgsp1_rep	three_prime_UTR	21363393	21363648	.	+	.	Parent=Os06t0558900-01
Chr06	irgsp1_rep	mRNA	21372400	21374070	.	+	.	ID=Os06t0559400-01;Name=Os06t0559400-01;Locus_id=Os06g0559400;CGSNL Gene Symbol=O3L2;CGSNL Gene Name=OXS3-LIKE 2;Oryzabase Gene Symbol Synonym(s)=OsO3L2;Oryzabase Gene Name Synonym(s)=OXIDATIVE STRESS 3-like 2%2C OXS3-like 2;Note=Conserved hypothetical protein.;Transcript_evidence=AK068350 (DDBJ%2C Best hit);ORF_evidence=A3BCR0 (UniProt);NIAS_FLcDNA=J013142H05;Oryzabase=22445;Expression=AK068350;TENOR=Os06t0559400-01;KEGG=Os06t0559400-01
Chr06	irgsp1_rep	five_prime_UTR	21372400	21372548	.	+	.	Parent=Os06t0559400-01
Chr06	irgsp1_rep	CDS	21372549	21372922	.	+	0	Parent=Os06t0559400-01
Chr06	irgsp1_rep	CDS	21373419	21373737	.	+	1	Parent=Os06t0559400-01
Chr06	irgsp1_rep	three_prime_UTR	21373738	21374070	.	+	.	Parent=Os06t0559400-01
Chr06	irgsp1_rep	mRNA	21372479	21374077	.	+	.	ID=Os06t0559400-02;Name=Os06t0559400-02;Locus_id=Os06g0559400;CGSNL Gene Symbol=O3L2;CGSNL Gene Name=OXS3-LIKE 2;Oryzabase Gene Symbol Synonym(s)=OsO3L2;Oryzabase Gene Name Synonym(s)=OXIDATIVE STRESS 3-like 2%2C OXS3-like 2;Note=Conserved hypothetical protein.;Transcript_evidence=AK068719 (DDBJ%2C Best hit);ORF_evidence=A3BCR0 (UniProt);NIAS_FLcDNA=J013162F05;Oryzabase=22445;Expression=AK068719;TENOR=Os06t0559400-02;KEGG=Os06t0559400-02
Chr06	irgsp1_rep	five_prime_UTR	21372479	21372548	.	+	.	Parent=Os06t0559400-02
Chr06	irgsp1_rep	CDS	21372549	21372922	.	+	0	Parent=Os06t0559400-02
Chr06	irgsp1_rep	CDS	21373419	21373737	.	+	1	Parent=Os06t0559400-02
Chr06	irgsp1_rep	three_prime_UTR	21373738	21374077	.	+	.	Parent=Os06t0559400-02
Chr06	irgsp1_rep	mRNA	21374014	21377312	.	-	.	ID=Os06t0559500-01;Name=Os06t0559500-01;Locus_id=Os06g0559500;Note=Similar to Acid phosphatase (EC 3.1.3.2) 1 allozyme 1.;Transcript_evidence=AK069355 (DDBJ%2C Best hit);ORF_evidence=B4F7Y5 (UniProt);GO=Molecular Function: acid phosphatase activity (GO:0003993);InterPro=Acid phosphatase (Class B) (IPR005519),Vegetative storage protein/acid phosphatase (IPR014403),HAD-like domain (IPR023214);NIAS_FLcDNA=J023014B19;Expression=AK069355;TENOR=Os06t0559500-01;KEGG=Os06t0559500-01 (EC:3.1.3.2)
Chr06	irgsp1_rep	five_prime_UTR	21377147	21377312	.	-	.	Parent=Os06t0559500-01
Chr06	irgsp1_rep	CDS	21376740	21377146	.	-	0	Parent=Os06t0559500-01
Chr06	irgsp1_rep	CDS	21375738	21375947	.	-	1	Parent=Os06t0559500-01
Chr06	irgsp1_rep	CDS	21374260	21374437	.	-	1	Parent=Os06t0559500-01
Chr06	irgsp1_rep	three_prime_UTR	21374014	21374259	.	-	.	Parent=Os06t0559500-01
Chr06	irgsp1_rep	mRNA	21373204	21377178	.	-	.	ID=Os06t0559500-02;Name=Os06t0559500-02;Locus_id=Os06g0559500;Note=Similar to Acid phosphatase (EC 3.1.3.2) 1 allozyme 1.;Transcript_evidence=AK289229 (DDBJ%2C Best hit);ORF_evidence=B4F7Y5 (UniProt);GO=Molecular Function: acid phosphatase activity (GO:0003993);InterPro=Acid phosphatase (Class B) (IPR005519),Vegetative storage protein/acid phosphatase (IPR014403),HAD-like domain (IPR023214);NIAS_FLcDNA=J100070A14;TENOR=Os06t0559500-02;KEGG=Os06t0559500-02 (EC:3.1.3.2)
Chr06	irgsp1_rep	five_prime_UTR	21377147	21377178	.	-	.	Parent=Os06t0559500-02
Chr06	irgsp1_rep	CDS	21376740	21377146	.	-	0	Parent=Os06t0559500-02
Chr06	irgsp1_rep	CDS	21375738	21375947	.	-	1	Parent=Os06t0559500-02
Chr06	irgsp1_rep	CDS	21374260	21374437	.	-	1	Parent=Os06t0559500-02
Chr06	irgsp1_rep	three_prime_UTR	21373204	21374259	.	-	.	Parent=Os06t0559500-02
Chr06	irgsp1_rep	mRNA	21374013	21377150	.	-	.	ID=Os06t0559500-03;Name=Os06t0559500-03;Locus_id=Os06g0559500;Note=Similar to Acid phosphatase (EC 3.1.3.2) 1 allozyme 1.;Transcript_evidence=AK060112 (DDBJ%2C Best hit);ORF_evidence=B4F7Y5 (UniProt);GO=Molecular Function: acid phosphatase activity (GO:0003993);InterPro=Acid phosphatase (Class B) (IPR005519),Vegetative storage protein/acid phosphatase (IPR014403),HAD-like domain (IPR023214);NIAS_FLcDNA=006-308-D10;TENOR=Os06t0559500-03
Chr06	irgsp1_rep	five_prime_UTR	21377147	21377150	.	-	.	Parent=Os06t0559500-03
Chr06	irgsp1_rep	CDS	21376740	21377146	.	-	0	Parent=Os06t0559500-03
Chr06	irgsp1_rep	CDS	21375738	21375947	.	-	1	Parent=Os06t0559500-03
Chr06	irgsp1_rep	CDS	21374260	21374437	.	-	1	Parent=Os06t0559500-03
Chr06	irgsp1_rep	three_prime_UTR	21374013	21374259	.	-	.	Parent=Os06t0559500-03
Chr06	irgsp1_rep	mRNA	21377602	21383078	.	-	.	ID=Os06t0559600-01;Name=Os06t0559600-01;Locus_id=Os06g0559600;Note=Hypothetical conserved gene.;Transcript_evidence=AK288799 (DDBJ%2C Best hit);ORF_evidence=A3BCR1 (UniProt);NIAS_FLcDNA=J090070K11;TENOR=Os06t0559600-01;KEGG=Os06t0559600-01
Chr06	irgsp1_rep	five_prime_UTR	21379356	21383078	.	-	.	Parent=Os06t0559600-01
Chr06	irgsp1_rep	CDS	21379146	21379355	.	-	0	Parent=Os06t0559600-01
Chr06	irgsp1_rep	three_prime_UTR	21377602	21379145	.	-	.	Parent=Os06t0559600-01
Chr06	irgsp1_rep	mRNA	21396825	21398746	.	-	.	ID=Os06t0559900-01;Name=Os06t0559900-01;Locus_id=Os06g0559900;Note=Hypothetical protein.;Transcript_evidence=AK106943 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-119-D07;Expression=AK106943;TENOR=Os06t0559900-01;KEGG=Os06t0559900-01
Chr06	irgsp1_rep	five_prime_UTR	21398562	21398746	.	-	.	Parent=Os06t0559900-01
Chr06	irgsp1_rep	CDS	21398166	21398561	.	-	0	Parent=Os06t0559900-01
Chr06	irgsp1_rep	three_prime_UTR	21396825	21398165	.	-	.	Parent=Os06t0559900-01
Chr06	irgsp1_rep	mRNA	21397006	21399317	.	+	.	ID=Os06t0560000-01;Name=Os06t0560000-01;Locus_id=Os06g0560000;Oryzabase Gene Name Synonym(s)=Ferroportin1%2C OsFerroportin%2C Ferroportin;Note=Ferroportin1 family protein.;Transcript_evidence=AK063490 (DDBJ%2C Best hit);ORF_evidence=NP_195977.2 (RefSeq);GO=Biological Process: iron ion transmembrane transport (GO:0034755),Cellular Component: integral to membrane (GO:0016021),Molecular Function: iron ion transmembrane transporter activity (GO:0005381);InterPro=Ferroporti-1 (IPR009716),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=001-116-C09;Oryzabase=11213;Expression=AK063490;TENOR=Os06t0560000-01;KEGG=Os06t0560000-01
Chr06	irgsp1_rep	five_prime_UTR	21397006	21397231	.	+	.	Parent=Os06t0560000-01
Chr06	irgsp1_rep	CDS	21397232	21397698	.	+	0	Parent=Os06t0560000-01
Chr06	irgsp1_rep	CDS	21397767	21398610	.	+	1	Parent=Os06t0560000-01
Chr06	irgsp1_rep	CDS	21398814	21398941	.	+	0	Parent=Os06t0560000-01
Chr06	irgsp1_rep	CDS	21399052	21399067	.	+	1	Parent=Os06t0560000-01
Chr06	irgsp1_rep	three_prime_UTR	21399068	21399317	.	+	.	Parent=Os06t0560000-01
Chr06	irgsp1_rep	mRNA	21397104	21399315	.	+	.	ID=Os06t0560000-02;Name=Os06t0560000-02;Locus_id=Os06g0560000;Oryzabase Gene Name Synonym(s)=Ferroportin1%2C OsFerroportin%2C Ferroportin;Note=Ferroportin1 family protein.;Transcript_evidence=AK101863 (DDBJ%2C Best hit);ORF_evidence=NP_195977.2 (RefSeq);GO=Biological Process: iron ion transmembrane transport (GO:0034755),Cellular Component: integral to membrane (GO:0016021),Molecular Function: iron ion transmembrane transporter activity (GO:0005381);InterPro=Ferroporti-1 (IPR009716),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J033070C07;Oryzabase=11213;Expression=AK101863;TENOR=Os06t0560000-02;KEGG=Os06t0560000-02
Chr06	irgsp1_rep	five_prime_UTR	21397104	21397231	.	+	.	Parent=Os06t0560000-02
Chr06	irgsp1_rep	CDS	21397232	21397698	.	+	0	Parent=Os06t0560000-02
Chr06	irgsp1_rep	CDS	21397767	21398610	.	+	1	Parent=Os06t0560000-02
Chr06	irgsp1_rep	CDS	21398814	21398941	.	+	0	Parent=Os06t0560000-02
Chr06	irgsp1_rep	CDS	21399052	21399067	.	+	1	Parent=Os06t0560000-02
Chr06	irgsp1_rep	three_prime_UTR	21399068	21399315	.	+	.	Parent=Os06t0560000-02
Chr06	irgsp1_rep	mRNA	21419757	21421894	.	-	.	ID=Os06t0560300-00;Name=Os06t0560300-00;Locus_id=Os06g0560300;CGSNL Gene Symbol=NAC94;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 94;Oryzabase Gene Symbol Synonym(s)=ONAC094%2C ONAC94;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 094%2C NAC domain-containing protein 94;Note=Similar to NAC-type transcription factor.;Transcript_evidence=EU969775 (DDBJ);ORF_evidence=NP_001152301.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);Oryzabase=15858;TENOR=Os06t0560300-00;KEGG=Os06t0560300-00
Chr06	irgsp1_rep	five_prime_UTR	21421655	21421894	.	-	.	Parent=Os06t0560300-00
Chr06	irgsp1_rep	CDS	21421508	21421654	.	-	0	Parent=Os06t0560300-00
Chr06	irgsp1_rep	CDS	21421190	21421370	.	-	0	Parent=Os06t0560300-00
Chr06	irgsp1_rep	CDS	21419757	21420427	.	-	2	Parent=Os06t0560300-00
Chr06	irgsp1_rep	mRNA	21431314	21435702	.	-	.	ID=Os06t0560400-01;Name=Os06t0560400-01;Locus_id=Os06g0560400;Note=Protein of unknown function DUF862%2C eukaryotic domain containing protein.;Transcript_evidence=AK103575 (DDBJ%2C Best hit),AK108074 (DDBJ%2C Best hit);ORF_evidence=NP_001152274.1 (RefSeq);InterPro=Domain of unknown function DUF862%2C eukaryotic (IPR008580);NIAS_FLcDNA=J033132P08,002-138-D09;Expression=AK103575;TENOR=Os06t0560400-01;KEGG=Os06t0560400-01
Chr06	irgsp1_rep	five_prime_UTR	21435508	21435702	.	-	.	Parent=Os06t0560400-01
Chr06	irgsp1_rep	CDS	21435345	21435507	.	-	0	Parent=Os06t0560400-01
Chr06	irgsp1_rep	CDS	21433453	21433740	.	-	2	Parent=Os06t0560400-01
Chr06	irgsp1_rep	CDS	21431806	21431889	.	-	2	Parent=Os06t0560400-01
Chr06	irgsp1_rep	CDS	21431574	21431689	.	-	2	Parent=Os06t0560400-01
Chr06	irgsp1_rep	three_prime_UTR	21431314	21431573	.	-	.	Parent=Os06t0560400-01
Chr06	irgsp1_rep	mRNA	21447774	21450993	.	+	.	ID=Os06t0560700-01;Name=Os06t0560700-01;Locus_id=Os06g0560700;CGSNL Gene Symbol=GELP86;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 86;Oryzabase Gene Symbol Synonym(s)=OsGELP86;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 86;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK063332 (DDBJ%2C Best hit);ORF_evidence=NP_001150646.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=001-114-A03;Oryzabase=11036;Expression=AK063332;TENOR=Os06t0560700-01;KEGG=Os06t0560700-01
Chr06	irgsp1_rep	five_prime_UTR	21447774	21447802	.	+	.	Parent=Os06t0560700-01
Chr06	irgsp1_rep	CDS	21447803	21448252	.	+	0	Parent=Os06t0560700-01
Chr06	irgsp1_rep	CDS	21449130	21449417	.	+	0	Parent=Os06t0560700-01
Chr06	irgsp1_rep	CDS	21449853	21450120	.	+	0	Parent=Os06t0560700-01
Chr06	irgsp1_rep	CDS	21450680	21450897	.	+	2	Parent=Os06t0560700-01
Chr06	irgsp1_rep	three_prime_UTR	21450898	21450993	.	+	.	Parent=Os06t0560700-01
Chr06	irgsp1_rep	mRNA	21478477	21482381	.	+	.	ID=Os06t0561000-01;Name=Os06t0561000-01;Locus_id=Os06g0561000;RAP-DB Gene Symbol Synonym(s)=OsMIOX%2C MIOX;RAP-DB Gene Name Synonym(s)=Myo-inositol oxygenase;CGSNL Gene Symbol=MIOX;CGSNL Gene Name=MYO-INOSITOL OXYGENASE;Oryzabase Gene Symbol Synonym(s)=OsMIOX;Oryzabase Gene Name Synonym(s)=Myo-inositol oxygenase;Note=Myo-inositol oxygenase%2C Drought stress tolerance;Transcript_evidence=AK103977,AK068862;ORF_evidence=Q5Z8T3;GO=Biological Process: inositol catabolic process (GO:0019310),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: inositol oxygenase activity (GO:0050113),Cellular Component: cytoplasm (GO:0005737);InterPro=Inositol oxygenase (IPR007828);NIAS_FLcDNA=001-016-G02, J013169F14;Manual Curation=February 17%2C 2017;Literature_PMID=23017909;Oryzabase=12129;TENOR=Os06t0561000-01
Chr06	irgsp1_rep	five_prime_UTR	21478477	21478658	.	+	.	Parent=Os06t0561000-01
Chr06	irgsp1_rep	CDS	21478659	21478689	.	+	0	Parent=Os06t0561000-01
Chr06	irgsp1_rep	CDS	21478833	21478947	.	+	2	Parent=Os06t0561000-01
Chr06	irgsp1_rep	CDS	21480048	21480129	.	+	1	Parent=Os06t0561000-01
Chr06	irgsp1_rep	CDS	21480264	21480468	.	+	0	Parent=Os06t0561000-01
Chr06	irgsp1_rep	CDS	21481057	21481116	.	+	2	Parent=Os06t0561000-01
Chr06	irgsp1_rep	CDS	21481240	21481292	.	+	2	Parent=Os06t0561000-01
Chr06	irgsp1_rep	CDS	21481409	21481531	.	+	0	Parent=Os06t0561000-01
Chr06	irgsp1_rep	CDS	21481664	21481733	.	+	0	Parent=Os06t0561000-01
Chr06	irgsp1_rep	CDS	21481832	21481910	.	+	2	Parent=Os06t0561000-01
Chr06	irgsp1_rep	CDS	21481992	21482073	.	+	1	Parent=Os06t0561000-01
Chr06	irgsp1_rep	CDS	21482176	21482202	.	+	0	Parent=Os06t0561000-01
Chr06	irgsp1_rep	three_prime_UTR	21482203	21482381	.	+	.	Parent=Os06t0561000-01
Chr06	irgsp1_rep	mRNA	21480339	21482073	.	-	.	ID=Os06t0561050-00;Name=Os06t0561050-00;Locus_id=Os06g0561050;Note=Hypothetical gene.;Transcript_evidence=BT018941 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0561050-00
Chr06	irgsp1_rep	five_prime_UTR	21481971	21482073	.	-	.	Parent=Os06t0561050-00
Chr06	irgsp1_rep	five_prime_UTR	21481832	21481887	.	-	.	Parent=Os06t0561050-00
Chr06	irgsp1_rep	five_prime_UTR	21481724	21481733	.	-	.	Parent=Os06t0561050-00
Chr06	irgsp1_rep	CDS	21481663	21481723	.	-	0	Parent=Os06t0561050-00
Chr06	irgsp1_rep	CDS	21481407	21481530	.	-	2	Parent=Os06t0561050-00
Chr06	irgsp1_rep	CDS	21481239	21481290	.	-	1	Parent=Os06t0561050-00
Chr06	irgsp1_rep	CDS	21481107	21481115	.	-	0	Parent=Os06t0561050-00
Chr06	irgsp1_rep	three_prime_UTR	21481056	21481106	.	-	.	Parent=Os06t0561050-00
Chr06	irgsp1_rep	three_prime_UTR	21480339	21480467	.	-	.	Parent=Os06t0561050-00
Chr06	irgsp1_rep	mRNA	21483762	21484166	.	-	.	ID=Os06t0561100-00;Name=Os06t0561100-00;Locus_id=Os06g0561100;CGSNL Gene Symbol=SCP37;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 37;Oryzabase Gene Symbol Synonym(s)=OsSCP37;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 37;Note=Similar to scpl50 (serine carboxypeptidase-like 50)%3B serine-type carboxypeptidase.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_172953.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563);Oryzabase=19217;TENOR=Os06t0561100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	21483762	21484166	.	-	0	Parent=Os06t0561100-00
Chr06	irgsp1_rep	mRNA	21493255	21501333	.	+	.	ID=Os06t0561200-01;Name=Os06t0561200-01;Locus_id=Os06g0561200;Note=Similar to Potassium/proton antiporter-like protein.;Transcript_evidence=AK120422 (DDBJ%2C Best hit);ORF_evidence=XP_002308566.1 (RefSeq);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: solute:hydrogen antiporter activity (GO:0015299);InterPro=Cation/H+ exchanger (IPR006153);NIAS_FLcDNA=J013095B15;Expression=AK120422;TENOR=Os06t0561200-01;KEGG=Os06t0561200-01
Chr06	irgsp1_rep	five_prime_UTR	21493255	21493342	.	+	.	Parent=Os06t0561200-01
Chr06	irgsp1_rep	CDS	21493343	21493712	.	+	0	Parent=Os06t0561200-01
Chr06	irgsp1_rep	CDS	21493918	21493961	.	+	2	Parent=Os06t0561200-01
Chr06	irgsp1_rep	CDS	21494736	21494794	.	+	0	Parent=Os06t0561200-01
Chr06	irgsp1_rep	CDS	21494910	21494982	.	+	1	Parent=Os06t0561200-01
Chr06	irgsp1_rep	CDS	21495101	21495162	.	+	0	Parent=Os06t0561200-01
Chr06	irgsp1_rep	CDS	21495244	21495319	.	+	1	Parent=Os06t0561200-01
Chr06	irgsp1_rep	CDS	21495438	21495512	.	+	0	Parent=Os06t0561200-01
Chr06	irgsp1_rep	CDS	21496357	21496428	.	+	0	Parent=Os06t0561200-01
Chr06	irgsp1_rep	CDS	21496519	21496602	.	+	0	Parent=Os06t0561200-01
Chr06	irgsp1_rep	CDS	21496767	21496835	.	+	0	Parent=Os06t0561200-01
Chr06	irgsp1_rep	CDS	21498031	21498108	.	+	0	Parent=Os06t0561200-01
Chr06	irgsp1_rep	CDS	21498288	21498376	.	+	0	Parent=Os06t0561200-01
Chr06	irgsp1_rep	CDS	21498688	21498784	.	+	1	Parent=Os06t0561200-01
Chr06	irgsp1_rep	CDS	21498904	21498957	.	+	0	Parent=Os06t0561200-01
Chr06	irgsp1_rep	CDS	21499463	21499558	.	+	0	Parent=Os06t0561200-01
Chr06	irgsp1_rep	CDS	21499750	21499938	.	+	0	Parent=Os06t0561200-01
Chr06	irgsp1_rep	CDS	21500020	21500097	.	+	0	Parent=Os06t0561200-01
Chr06	irgsp1_rep	CDS	21500331	21500375	.	+	0	Parent=Os06t0561200-01
Chr06	irgsp1_rep	CDS	21500548	21500640	.	+	0	Parent=Os06t0561200-01
Chr06	irgsp1_rep	CDS	21500727	21500807	.	+	0	Parent=Os06t0561200-01
Chr06	irgsp1_rep	three_prime_UTR	21500808	21501333	.	+	.	Parent=Os06t0561200-01
Chr06	irgsp1_rep	mRNA	21518016	21524098	.	-	.	ID=Os06t0561501-01;Name=Os06t0561501-01;Locus_id=Os06g0561501;Note=Conserved hypothetical protein.;Transcript_evidence=AK288734 (DDBJ%2C Best hit);ORF_evidence=Q850V7 (UniProt);NIAS_FLcDNA=J090063I24;TENOR=Os06t0561501-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	21521530	21524098	.	-	.	Parent=Os06t0561501-01
Chr06	irgsp1_rep	CDS	21521086	21521529	.	-	0	Parent=Os06t0561501-01
Chr06	irgsp1_rep	three_prime_UTR	21518016	21521085	.	-	.	Parent=Os06t0561501-01
Chr06	irgsp1_rep	mRNA	21538943	21544291	.	+	.	ID=Os06t0561800-00;Name=Os06t0561800-00;Locus_id=Os06g0561800;CGSNL Gene Symbol=MRP11;CGSNL Gene Name=MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 11;Oryzabase Gene Symbol Synonym(s)=OsABCC11%2C OsMRP11;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCC subgroup member 11%2C multidrug resistance-associated protein 11;Note=ABC transporter%2C transmembrane domain domain containing protein.;Transcript_evidence=AK360758 (DDBJ);ORF_evidence=F2DNZ9 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C integral membrane type 1 (IPR017940);Oryzabase=11962;TENOR=Os06t0561800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	21538943	21540256	.	+	0	Parent=Os06t0561800-00
Chr06	irgsp1_rep	CDS	21540779	21540937	.	+	0	Parent=Os06t0561800-00
Chr06	irgsp1_rep	three_prime_UTR	21540938	21540995	.	+	.	Parent=Os06t0561800-00
Chr06	irgsp1_rep	three_prime_UTR	21541073	21541176	.	+	.	Parent=Os06t0561800-00
Chr06	irgsp1_rep	three_prime_UTR	21541262	21541876	.	+	.	Parent=Os06t0561800-00
Chr06	irgsp1_rep	three_prime_UTR	21541988	21542152	.	+	.	Parent=Os06t0561800-00
Chr06	irgsp1_rep	three_prime_UTR	21542273	21542565	.	+	.	Parent=Os06t0561800-00
Chr06	irgsp1_rep	three_prime_UTR	21542736	21542950	.	+	.	Parent=Os06t0561800-00
Chr06	irgsp1_rep	three_prime_UTR	21543044	21543349	.	+	.	Parent=Os06t0561800-00
Chr06	irgsp1_rep	three_prime_UTR	21543570	21543633	.	+	.	Parent=Os06t0561800-00
Chr06	irgsp1_rep	three_prime_UTR	21543722	21543961	.	+	.	Parent=Os06t0561800-00
Chr06	irgsp1_rep	three_prime_UTR	21544126	21544291	.	+	.	Parent=Os06t0561800-00
Chr06	irgsp1_rep	mRNA	21556404	21557283	.	+	.	ID=Os06t0562200-01;Name=Os06t0562200-01;Locus_id=Os06g0562200;RAP-DB Gene Symbol Synonym(s)=OsPYL9%2C OsPYL/RCAR9;RAP-DB Gene Name Synonym(s)=pyrabactin resistance-like 9;CGSNL Gene Symbol=PYL/RCAR9;CGSNL Gene Name=PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 9;Oryzabase Gene Symbol Synonym(s)=OsPYL/RCAR9%2C PYL9%2C OsPYL9%2C OsPYL2%2C PYL2;Oryzabase Gene Name Synonym(s)=pyrabactin resistance-like 9%2C PYR1-like 2%2C pyrabactin resistance 1-like 2;Note=Pyrabactin resistance-like (PYL) abscisic acid receptor family protein%2C ABA-mediated inhibition of seed germination%2C Drought and cold stress tolerance;Transcript_evidence=AK107448;ORF_evidence=Q5Z8S0;InterPro=START-like domain superfamily (IPR023393),Polyketide cyclase/dehydrase (IPR019587);NIAS_FLcDNA=002-128-C02;Manual Curation=May 19%2C 2020;Literature_PMID=26362328;Oryzabase=17876;Expression=AK107448;TENOR=Os06t0562200-01;KEGG=Os06t0562200-01;Subcellular location=cytosol (GO:0005829), nucleus (GO:0005634)
Chr06	irgsp1_rep	five_prime_UTR	21556404	21556462	.	+	.	Parent=Os06t0562200-01
Chr06	irgsp1_rep	CDS	21556463	21557086	.	+	0	Parent=Os06t0562200-01
Chr06	irgsp1_rep	three_prime_UTR	21557087	21557283	.	+	.	Parent=Os06t0562200-01
Chr06	irgsp1_rep	mRNA	21564071	21566577	.	-	.	ID=Os06t0562300-00;Name=Os06t0562300-00;Locus_id=Os06g0562300;Note=Similar to BEL1-type homeodomain protein.;Transcript_evidence=AB546644 (DDBJ);ORF_evidence=D4QFI3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),POX (IPR006563),Homeobox KN domain (IPR008422),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);TENOR=Os06t0562300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	21565537	21566577	.	-	0	Parent=Os06t0562300-00
Chr06	irgsp1_rep	CDS	21565077	21565459	.	-	0	Parent=Os06t0562300-00
Chr06	irgsp1_rep	CDS	21564350	21564410	.	-	1	Parent=Os06t0562300-00
Chr06	irgsp1_rep	CDS	21564071	21564223	.	-	0	Parent=Os06t0562300-00
Chr06	irgsp1_rep	mRNA	21598246	21602635	.	-	.	ID=Os06t0562600-01;Name=Os06t0562600-01;Locus_id=Os06g0562600;Note=Similar to T-complex protein 1%2C epsilon subunit (TCP-1-epsilon) (CCT-epsilon) (TCP-K36).;Transcript_evidence=AK067114 (DDBJ%2C Best hit),AK105701 (DDBJ%2C Best hit);ORF_evidence=B4FQL5 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: cellular protein metabolic process (GO:0044267),Molecular Function: ATP binding (GO:0005524),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Chaperonin TCP-1%2C conserved site (IPR002194),Chaperonin Cpn60/TCP-1 (IPR002423),T-complex protein 1%2C epsilon subunit (IPR012718),Chaperone%2C tailless complex polypeptide 1 (IPR017998);NIAS_FLcDNA=J013095K16,001-201-D07;Expression=AK067114;TENOR=Os06t0562600-01;KEGG=Os06t0562600-01
Chr06	irgsp1_rep	five_prime_UTR	21602538	21602635	.	-	.	Parent=Os06t0562600-01
Chr06	irgsp1_rep	CDS	21602339	21602537	.	-	0	Parent=Os06t0562600-01
Chr06	irgsp1_rep	CDS	21601505	21601823	.	-	2	Parent=Os06t0562600-01
Chr06	irgsp1_rep	CDS	21600655	21601003	.	-	1	Parent=Os06t0562600-01
Chr06	irgsp1_rep	CDS	21600258	21600390	.	-	0	Parent=Os06t0562600-01
Chr06	irgsp1_rep	CDS	21600135	21600187	.	-	2	Parent=Os06t0562600-01
Chr06	irgsp1_rep	CDS	21599871	21599973	.	-	0	Parent=Os06t0562600-01
Chr06	irgsp1_rep	CDS	21599267	21599433	.	-	2	Parent=Os06t0562600-01
Chr06	irgsp1_rep	CDS	21599081	21599194	.	-	0	Parent=Os06t0562600-01
Chr06	irgsp1_rep	CDS	21598631	21598801	.	-	0	Parent=Os06t0562600-01
Chr06	irgsp1_rep	three_prime_UTR	21598246	21598630	.	-	.	Parent=Os06t0562600-01
Chr06	irgsp1_rep	mRNA	21614166	21617120	.	-	.	ID=Os06t0562700-01;Name=Os06t0562700-01;Locus_id=Os06g0562700;Note=Conserved hypothetical protein.;Transcript_evidence=AK109753 (DDBJ%2C Best hit);ORF_evidence=B8B3S4 (UniProt);NIAS_FLcDNA=002-146-F11;Expression=AK109753;TENOR=Os06t0562700-01;KEGG=Os06t0562700-01
Chr06	irgsp1_rep	five_prime_UTR	21616954	21617120	.	-	.	Parent=Os06t0562700-01
Chr06	irgsp1_rep	five_prime_UTR	21616730	21616816	.	-	.	Parent=Os06t0562700-01
Chr06	irgsp1_rep	CDS	21616655	21616729	.	-	0	Parent=Os06t0562700-01
Chr06	irgsp1_rep	CDS	21616424	21616555	.	-	0	Parent=Os06t0562700-01
Chr06	irgsp1_rep	CDS	21615558	21615833	.	-	0	Parent=Os06t0562700-01
Chr06	irgsp1_rep	CDS	21615309	21615370	.	-	0	Parent=Os06t0562700-01
Chr06	irgsp1_rep	CDS	21614291	21615041	.	-	1	Parent=Os06t0562700-01
Chr06	irgsp1_rep	three_prime_UTR	21614166	21614290	.	-	.	Parent=Os06t0562700-01
Chr06	irgsp1_rep	mRNA	21637467	21641983	.	-	.	ID=Os06t0563000-01;Name=Os06t0563000-01;Locus_id=Os06g0563000;Note=Ndr family protein.;Transcript_evidence=AK099669 (DDBJ%2C Best hit);ORF_evidence=B6TFK0 (UniProt);InterPro=Ndr (IPR004142),Pollen specific protein SF21 (IPR015511);NIAS_FLcDNA=J013068F20;Expression=AK099669;TENOR=Os06t0563000-01;KEGG=Os06t0563000-01
Chr06	irgsp1_rep	five_prime_UTR	21641851	21641983	.	-	.	Parent=Os06t0563000-01
Chr06	irgsp1_rep	CDS	21641788	21641850	.	-	0	Parent=Os06t0563000-01
Chr06	irgsp1_rep	CDS	21639475	21639574	.	-	0	Parent=Os06t0563000-01
Chr06	irgsp1_rep	CDS	21639268	21639365	.	-	2	Parent=Os06t0563000-01
Chr06	irgsp1_rep	CDS	21639040	21639128	.	-	0	Parent=Os06t0563000-01
Chr06	irgsp1_rep	CDS	21638887	21638947	.	-	1	Parent=Os06t0563000-01
Chr06	irgsp1_rep	CDS	21638722	21638808	.	-	0	Parent=Os06t0563000-01
Chr06	irgsp1_rep	CDS	21638554	21638631	.	-	0	Parent=Os06t0563000-01
Chr06	irgsp1_rep	CDS	21638412	21638468	.	-	0	Parent=Os06t0563000-01
Chr06	irgsp1_rep	CDS	21638255	21638310	.	-	0	Parent=Os06t0563000-01
Chr06	irgsp1_rep	CDS	21638027	21638162	.	-	1	Parent=Os06t0563000-01
Chr06	irgsp1_rep	CDS	21637723	21637944	.	-	0	Parent=Os06t0563000-01
Chr06	irgsp1_rep	three_prime_UTR	21637467	21637722	.	-	.	Parent=Os06t0563000-01
Chr06	irgsp1_rep	mRNA	21637738	21641925	.	+	.	ID=Os06t0563125-00;Name=Os06t0563125-00;Locus_id=Os06g0563125;Note=Hypothetical protein.;Transcript_evidence=tplb0040g21 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0563125-00
Chr06	irgsp1_rep	five_prime_UTR	21637738	21637771	.	+	.	Parent=Os06t0563125-00
Chr06	irgsp1_rep	CDS	21637772	21637939	.	+	0	Parent=Os06t0563125-00
Chr06	irgsp1_rep	CDS	21638023	21638179	.	+	0	Parent=Os06t0563125-00
Chr06	irgsp1_rep	CDS	21638382	21638404	.	+	2	Parent=Os06t0563125-00
Chr06	irgsp1_rep	three_prime_UTR	21638405	21638472	.	+	.	Parent=Os06t0563125-00
Chr06	irgsp1_rep	three_prime_UTR	21638652	21638805	.	+	.	Parent=Os06t0563125-00
Chr06	irgsp1_rep	three_prime_UTR	21638884	21638945	.	+	.	Parent=Os06t0563125-00
Chr06	irgsp1_rep	three_prime_UTR	21639034	21639106	.	+	.	Parent=Os06t0563125-00
Chr06	irgsp1_rep	three_prime_UTR	21639254	21639389	.	+	.	Parent=Os06t0563125-00
Chr06	irgsp1_rep	three_prime_UTR	21639499	21639561	.	+	.	Parent=Os06t0563125-00
Chr06	irgsp1_rep	three_prime_UTR	21641775	21641925	.	+	.	Parent=Os06t0563125-00
Chr06	irgsp1_rep	mRNA	21654906	21662261	.	-	.	ID=Os06t0563250-01;Name=Os06t0563250-01;Locus_id=Os06g0563250;Note=Hypothetical gene.;Transcript_evidence=AK111494 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013000D03;Expression=AK111494;TENOR=Os06t0563250-01;KEGG=Os06t0563250-01
Chr06	irgsp1_rep	five_prime_UTR	21661662	21662261	.	-	.	Parent=Os06t0563250-01
Chr06	irgsp1_rep	five_prime_UTR	21661497	21661564	.	-	.	Parent=Os06t0563250-01
Chr06	irgsp1_rep	five_prime_UTR	21661150	21661227	.	-	.	Parent=Os06t0563250-01
Chr06	irgsp1_rep	five_prime_UTR	21660966	21661057	.	-	.	Parent=Os06t0563250-01
Chr06	irgsp1_rep	five_prime_UTR	21660818	21660886	.	-	.	Parent=Os06t0563250-01
Chr06	irgsp1_rep	five_prime_UTR	21659836	21659959	.	-	.	Parent=Os06t0563250-01
Chr06	irgsp1_rep	five_prime_UTR	21659542	21659665	.	-	.	Parent=Os06t0563250-01
Chr06	irgsp1_rep	five_prime_UTR	21658668	21658786	.	-	.	Parent=Os06t0563250-01
Chr06	irgsp1_rep	five_prime_UTR	21658212	21658303	.	-	.	Parent=Os06t0563250-01
Chr06	irgsp1_rep	five_prime_UTR	21657869	21658069	.	-	.	Parent=Os06t0563250-01
Chr06	irgsp1_rep	five_prime_UTR	21657084	21657203	.	-	.	Parent=Os06t0563250-01
Chr06	irgsp1_rep	five_prime_UTR	21656744	21656839	.	-	.	Parent=Os06t0563250-01
Chr06	irgsp1_rep	five_prime_UTR	21656611	21656670	.	-	.	Parent=Os06t0563250-01
Chr06	irgsp1_rep	CDS	21656567	21656610	.	-	0	Parent=Os06t0563250-01
Chr06	irgsp1_rep	CDS	21654906	21655278	.	-	1	Parent=Os06t0563250-01
Chr06	irgsp1_rep	mRNA	21659926	21662280	.	+	.	ID=Os06t0563300-01;Name=Os06t0563300-01;Locus_id=Os06g0563300;Note=Similar to Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit Bbeta isoform.;Transcript_evidence=AK111862 (DDBJ%2C Best hit);ORF_evidence=B6SW46 (UniProt);GO=Biological Process: signal transduction (GO:0007165),Cellular Component: protein phosphatase type 2A complex (GO:0000159),Molecular Function: protein phosphatase type 2A regulator activity (GO:0008601);InterPro=Protein phosphatase 2A%2C regulatory subunit PR55 (IPR000009);NIAS_FLcDNA=J033024L19;Expression=AK111862;TENOR=Os06t0563300-01;KEGG=Os06t0563300-01
Chr06	irgsp1_rep	five_prime_UTR	21659926	21659926	.	+	.	Parent=Os06t0563300-01
Chr06	irgsp1_rep	CDS	21659927	21659959	.	+	0	Parent=Os06t0563300-01
Chr06	irgsp1_rep	CDS	21660818	21660886	.	+	0	Parent=Os06t0563300-01
Chr06	irgsp1_rep	CDS	21660966	21661057	.	+	0	Parent=Os06t0563300-01
Chr06	irgsp1_rep	CDS	21661150	21661227	.	+	1	Parent=Os06t0563300-01
Chr06	irgsp1_rep	CDS	21661497	21661564	.	+	1	Parent=Os06t0563300-01
Chr06	irgsp1_rep	CDS	21661662	21661798	.	+	2	Parent=Os06t0563300-01
Chr06	irgsp1_rep	three_prime_UTR	21661799	21662280	.	+	.	Parent=Os06t0563300-01
Chr06	irgsp1_rep	mRNA	21677541	21684368	.	+	.	ID=Os06t0563900-01;Name=Os06t0563900-01;Locus_id=Os06g0563900;RAP-DB Gene Symbol Synonym(s)=OsDGAT1-2;RAP-DB Gene Name Synonym(s)=diacylglycerol acyltransferase 1-2;Note=Type-1 diacylglycerol acyltransferase%2C Triacylglycerol accumulation%2C Storage lipid biosynthesis;Transcript_evidence=AK243139;ORF_evidence=A0A0P0WY03;GO=Biological Process: triglyceride biosynthetic process (GO:0019432),Molecular Function: diacylglycerol O-acyltransferase activity (GO:0004144),Molecular Function: O-acyltransferase activity (GO:0008374);InterPro=Membrane bound O-acyl transferase%2C MBOAT (IPR004299),Sterol O-acyltransferase%2C ACAT/DAG/ARE types (IPR014371),Diacylglycerol O-acyltransferase 1 (IPR027251);NIAS_FLcDNA=J100031F15;Manual Curation=October 23%2C 2020;Literature_PMID=33089420;TENOR=Os06t0563900-01;KEGG=Os06t0563900-01 (EC:2.3.1.20)
Chr06	irgsp1_rep	five_prime_UTR	21677541	21677674	.	+	.	Parent=Os06t0563900-01
Chr06	irgsp1_rep	CDS	21677675	21677905	.	+	0	Parent=Os06t0563900-01
Chr06	irgsp1_rep	CDS	21679211	21679291	.	+	0	Parent=Os06t0563900-01
Chr06	irgsp1_rep	CDS	21679430	21679503	.	+	0	Parent=Os06t0563900-01
Chr06	irgsp1_rep	CDS	21679587	21679662	.	+	1	Parent=Os06t0563900-01
Chr06	irgsp1_rep	CDS	21679834	21679901	.	+	0	Parent=Os06t0563900-01
Chr06	irgsp1_rep	CDS	21680623	21680746	.	+	1	Parent=Os06t0563900-01
Chr06	irgsp1_rep	CDS	21681084	21681182	.	+	0	Parent=Os06t0563900-01
Chr06	irgsp1_rep	CDS	21681318	21681419	.	+	0	Parent=Os06t0563900-01
Chr06	irgsp1_rep	CDS	21681499	21681635	.	+	0	Parent=Os06t0563900-01
Chr06	irgsp1_rep	CDS	21681986	21682067	.	+	1	Parent=Os06t0563900-01
Chr06	irgsp1_rep	CDS	21682192	21682212	.	+	0	Parent=Os06t0563900-01
Chr06	irgsp1_rep	CDS	21682415	21682477	.	+	0	Parent=Os06t0563900-01
Chr06	irgsp1_rep	CDS	21683092	21683139	.	+	0	Parent=Os06t0563900-01
Chr06	irgsp1_rep	CDS	21683272	21683334	.	+	0	Parent=Os06t0563900-01
Chr06	irgsp1_rep	CDS	21683690	21683743	.	+	0	Parent=Os06t0563900-01
Chr06	irgsp1_rep	CDS	21683832	21683942	.	+	0	Parent=Os06t0563900-01
Chr06	irgsp1_rep	three_prime_UTR	21683943	21684368	.	+	.	Parent=Os06t0563900-01
Chr06	irgsp1_rep	mRNA	21685267	21686010	.	-	.	ID=Os06t0564100-01;Name=Os06t0564100-01;Locus_id=Os06g0564100;Note=Protein of unknown function DUF3511 domain containing protein.;Transcript_evidence=AK107513 (DDBJ%2C Best hit);ORF_evidence=A2YE52 (UniProt);InterPro=Protein of unknown function DUF3511 (IPR021899);NIAS_FLcDNA=002-129-F01;Expression=AK107513;TENOR=Os06t0564100-01;KEGG=Os06t0564100-01
Chr06	irgsp1_rep	five_prime_UTR	21685923	21686010	.	-	.	Parent=Os06t0564100-01
Chr06	irgsp1_rep	CDS	21685518	21685922	.	-	0	Parent=Os06t0564100-01
Chr06	irgsp1_rep	three_prime_UTR	21685267	21685517	.	-	.	Parent=Os06t0564100-01
Chr06	irgsp1_rep	mRNA	21695353	21698217	.	+	.	ID=Os06t0564300-01;Name=Os06t0564300-01;Locus_id=Os06g0564300;Note=Conserved hypothetical protein.;Transcript_evidence=AK109759 (DDBJ%2C Best hit);ORF_evidence=NP_001174368.1 (RefSeq);NIAS_FLcDNA=002-146-G07;TENOR=Os06t0564300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	21695353	21695368	.	+	.	Parent=Os06t0564300-01
Chr06	irgsp1_rep	CDS	21695369	21695662	.	+	0	Parent=Os06t0564300-01
Chr06	irgsp1_rep	three_prime_UTR	21695663	21696009	.	+	.	Parent=Os06t0564300-01
Chr06	irgsp1_rep	three_prime_UTR	21696087	21696148	.	+	.	Parent=Os06t0564300-01
Chr06	irgsp1_rep	three_prime_UTR	21697914	21698217	.	+	.	Parent=Os06t0564300-01
Chr06	irgsp1_rep	mRNA	21697800	21699561	.	-	.	ID=Os06t0564400-00;Name=Os06t0564400-00;Locus_id=Os06g0564400;Oryzabase Gene Name Synonym(s)=Putative cysteine synthase;Note=Similar to Cysteine synthase.;Transcript_evidence=ab initio prediction;ORF_evidence=Q9XEA7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent enzyme%2C beta subunit (IPR001926);Oryzabase=21968;TENOR=Os06t0564400-00;KEGG=Os06t0564400-00 (EC:4.2.1.22)
Chr06	irgsp1_rep	CDS	21699451	21699561	.	-	0	Parent=Os06t0564400-00
Chr06	irgsp1_rep	CDS	21698989	21699116	.	-	0	Parent=Os06t0564400-00
Chr06	irgsp1_rep	CDS	21698604	21698806	.	-	1	Parent=Os06t0564400-00
Chr06	irgsp1_rep	CDS	21698248	21698373	.	-	2	Parent=Os06t0564400-00
Chr06	irgsp1_rep	CDS	21697800	21698005	.	-	2	Parent=Os06t0564400-00
Chr06	irgsp1_rep	mRNA	21700599	21703282	.	-	.	ID=Os06t0564500-01;Name=Os06t0564500-01;Locus_id=Os06g0564500;Note=Cysteine synthase (EC 4.2.99.8).;Transcript_evidence=AK062038 (DDBJ%2C Best hit),AK067454 (DDBJ%2C Best hit);ORF_evidence=Q9XEA7 (UniProt);GO=Biological Process: cysteine biosynthetic process from serine (GO:0006535),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: cysteine synthase activity (GO:0004124),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent enzyme%2C beta subunit (IPR001926),Cysteine synthase K/M (IPR005856),Cysteine synthase A (IPR005859);NIAS_FLcDNA=001-043-H12,J013107A08;Expression=AK062038;TENOR=Os06t0564500-01;KEGG=Os06t0564500-01 (EC:4.2.1.22%2C EC:4.2.99.8)
Chr06	irgsp1_rep	five_prime_UTR	21703281	21703282	.	-	.	Parent=Os06t0564500-01
Chr06	irgsp1_rep	CDS	21703143	21703280	.	-	0	Parent=Os06t0564500-01
Chr06	irgsp1_rep	CDS	21702712	21702839	.	-	0	Parent=Os06t0564500-01
Chr06	irgsp1_rep	CDS	21702322	21702524	.	-	1	Parent=Os06t0564500-01
Chr06	irgsp1_rep	CDS	21701937	21702062	.	-	2	Parent=Os06t0564500-01
Chr06	irgsp1_rep	CDS	21701635	21701793	.	-	2	Parent=Os06t0564500-01
Chr06	irgsp1_rep	CDS	21700984	21701177	.	-	2	Parent=Os06t0564500-01
Chr06	irgsp1_rep	CDS	21700775	21700900	.	-	0	Parent=Os06t0564500-01
Chr06	irgsp1_rep	three_prime_UTR	21700599	21700774	.	-	.	Parent=Os06t0564500-01
Chr06	irgsp1_rep	mRNA	21730402	21733637	.	-	.	ID=Os06t0564700-01;Name=Os06t0564700-01;Locus_id=Os06g0564700;Note=Similar to Cysteine synthase (EC 4.2.99.8).;Transcript_evidence=AK070508 (DDBJ%2C Best hit);ORF_evidence=Q9XEA7 (UniProt);GO=Biological Process: cysteine biosynthetic process from serine (GO:0006535),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: cysteine synthase activity (GO:0004124),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent enzyme%2C beta subunit (IPR001926),Cysteine synthase K/M (IPR005856),Cysteine synthase A (IPR005859);NIAS_FLcDNA=J023050D23;Expression=AK070508;TENOR=Os06t0564700-01;KEGG=Os06t0564700-01 (EC:4.2.1.22%2C EC:4.2.99.8)
Chr06	irgsp1_rep	five_prime_UTR	21733604	21733637	.	-	.	Parent=Os06t0564700-01
Chr06	irgsp1_rep	CDS	21733511	21733603	.	-	0	Parent=Os06t0564700-01
Chr06	irgsp1_rep	CDS	21732511	21732638	.	-	0	Parent=Os06t0564700-01
Chr06	irgsp1_rep	CDS	21732110	21732312	.	-	1	Parent=Os06t0564700-01
Chr06	irgsp1_rep	CDS	21731724	21731849	.	-	2	Parent=Os06t0564700-01
Chr06	irgsp1_rep	CDS	21731447	21731605	.	-	2	Parent=Os06t0564700-01
Chr06	irgsp1_rep	CDS	21731066	21731259	.	-	2	Parent=Os06t0564700-01
Chr06	irgsp1_rep	CDS	21730856	21730981	.	-	0	Parent=Os06t0564700-01
Chr06	irgsp1_rep	three_prime_UTR	21730402	21730855	.	-	.	Parent=Os06t0564700-01
Chr06	irgsp1_rep	mRNA	21734472	21735911	.	-	.	ID=Os06t0564800-01;Name=Os06t0564800-01;Locus_id=Os06g0564800;Note=Similar to beta-1%2C4-mannosyltransferase.;Transcript_evidence=AK288135 (DDBJ%2C Best hit);ORF_evidence=NP_001149006.1 (RefSeq);NIAS_FLcDNA=J080305D01;TENOR=Os06t0564800-01;KEGG=Os06t0564800-01 (EC:2.4.1.142)
Chr06	irgsp1_rep	five_prime_UTR	21735911	21735911	.	-	.	Parent=Os06t0564800-01
Chr06	irgsp1_rep	CDS	21735854	21735910	.	-	0	Parent=Os06t0564800-01
Chr06	irgsp1_rep	CDS	21735718	21735770	.	-	0	Parent=Os06t0564800-01
Chr06	irgsp1_rep	CDS	21735535	21735610	.	-	1	Parent=Os06t0564800-01
Chr06	irgsp1_rep	CDS	21735291	21735419	.	-	0	Parent=Os06t0564800-01
Chr06	irgsp1_rep	CDS	21735125	21735136	.	-	0	Parent=Os06t0564800-01
Chr06	irgsp1_rep	three_prime_UTR	21734472	21735124	.	-	.	Parent=Os06t0564800-01
Chr06	irgsp1_rep	mRNA	21749812	21755219	.	+	.	ID=Os06t0565000-00;Name=Os06t0565000-00;Locus_id=Os06g0565000;Note=Hypothetical conserved gene.;Transcript_evidence=AK334388 (DDBJ);ORF_evidence=Q5Z6A6 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os06t0565000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	21749812	21749880	.	+	.	Parent=Os06t0565000-00
Chr06	irgsp1_rep	five_prime_UTR	21750345	21750355	.	+	.	Parent=Os06t0565000-00
Chr06	irgsp1_rep	CDS	21750356	21752408	.	+	0	Parent=Os06t0565000-00
Chr06	irgsp1_rep	CDS	21752461	21752492	.	+	2	Parent=Os06t0565000-00
Chr06	irgsp1_rep	three_prime_UTR	21752493	21752721	.	+	.	Parent=Os06t0565000-00
Chr06	irgsp1_rep	three_prime_UTR	21753052	21753112	.	+	.	Parent=Os06t0565000-00
Chr06	irgsp1_rep	three_prime_UTR	21753955	21755219	.	+	.	Parent=Os06t0565000-00
Chr06	irgsp1_rep	mRNA	21755618	21758564	.	-	.	ID=Os06t0565100-01;Name=Os06t0565100-01;Locus_id=Os06g0565100;RAP-DB Gene Symbol Synonym(s)=Os5100%2C CYP711A6;Oryzabase Gene Symbol Synonym(s)=OsMAX1b%2C MAX1b%2C Os5100/CYP711A6%2C Os5100%2C CYP711A6%2C Os/CYP711A6;Oryzabase Gene Name Synonym(s)=MORE AXILLARY GROWTH 1b%2C CytoChrome P450 711A6;Note=CytoChrome P450 family member%2C  Homolog of Arabidopsis MORE AXILLARY GROWTH 1 (MAX1);Transcript_evidence=JX566698;ORF_evidence=Q5Z6A5;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 superfamily (IPR036396),CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);Manual Curation=March 20%2C 2018;Literature_PMID=29479714,23424248;Oryzabase=19610;TENOR=Os06t0565100-00;KEGG=Os06t0565100-00
Chr06	irgsp1_rep	CDS	21758326	21758564	.	-	0	Parent=Os06t0565100-01
Chr06	irgsp1_rep	CDS	21758031	21758183	.	-	1	Parent=Os06t0565100-01
Chr06	irgsp1_rep	CDS	21756674	21757463	.	-	1	Parent=Os06t0565100-01
Chr06	irgsp1_rep	CDS	21756058	21756153	.	-	0	Parent=Os06t0565100-01
Chr06	irgsp1_rep	CDS	21755618	21755962	.	-	0	Parent=Os06t0565100-01
Chr06	irgsp1_rep	mRNA	21755639	21758465	.	+	.	ID=Os06t0565150-00;Name=Os06t0565150-00;Locus_id=Os06g0565150;Note=Hypothetical protein.;Transcript_evidence=tplb0051d09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0565150-00
Chr06	irgsp1_rep	five_prime_UTR	21755639	21755969	.	+	.	Parent=Os06t0565150-00
Chr06	irgsp1_rep	five_prime_UTR	21756067	21756187	.	+	.	Parent=Os06t0565150-00
Chr06	irgsp1_rep	five_prime_UTR	21756704	21757118	.	+	.	Parent=Os06t0565150-00
Chr06	irgsp1_rep	CDS	21757119	21757476	.	+	0	Parent=Os06t0565150-00
Chr06	irgsp1_rep	CDS	21758043	21758175	.	+	2	Parent=Os06t0565150-00
Chr06	irgsp1_rep	CDS	21758318	21758465	.	+	1	Parent=Os06t0565150-00
Chr06	irgsp1_rep	mRNA	21761304	21762421	.	+	.	ID=Os06t0565200-00;Name=Os06t0565200-00;Locus_id=Os06g0565200;CGSNL Gene Symbol=HSFA6;CGSNL Gene Name=HEAT STRESS TRANSCRIPTION FACTOR A6;Oryzabase Gene Symbol Synonym(s)=HSfA6%2C OsHsfA6%2C OsHsf-17%2C HSF17%2C OsHSF17%2C HSFA6A%2C OsHsfA2f%2C HsfA2f%2C OsHsfA7b%2C HsfA7b;Oryzabase Gene Name Synonym(s)=Heat stress transcription factor A6%2C Putative heat stress transcription factor A-6a%2C Heat stress transcription factor 17;Note=Putative heat stress transcription factor A-6a.;Transcript_evidence=Q5Z6A4 (UniProt);ORF_evidence=Q5Z6A4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Heat shock factor (HSF)-type%2C DNA-binding (IPR000232),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);Oryzabase=8557;TENOR=Os06t0565200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	21761304	21761612	.	+	0	Parent=Os06t0565200-00
Chr06	irgsp1_rep	CDS	21761735	21762421	.	+	0	Parent=Os06t0565200-00
Chr06	irgsp1_rep	mRNA	21761729	21762160	.	-	.	ID=Os06t0565250-00;Name=Os06t0565250-00;Locus_id=Os06g0565250;Note=Hypothetical protein.;Transcript_evidence=EU972049 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0565250-00
Chr06	irgsp1_rep	CDS	21761729	21762160	.	-	0	Parent=Os06t0565250-00
Chr06	irgsp1_rep	mRNA	21763416	21763871	.	-	.	ID=Os06t0565300-00;Name=Os06t0565300-00;Locus_id=Os06g0565300;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001057890.1 (RefSeq);TENOR=Os06t0565300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	21763416	21763871	.	-	0	Parent=Os06t0565300-00
Chr06	irgsp1_rep	mRNA	21811138	21815337	.	+	.	ID=Os06t0565900-01;Name=Os06t0565900-01;Locus_id=Os06g0565900;Note=Similar to Potential phospholipid-transporting ATPase 4 (EC 3.6.3.1) (Aminophospholipid flippase 4).;Transcript_evidence=AK066838 (DDBJ%2C Best hit);ORF_evidence=XP_002327449.1 (RefSeq);GO=Biological Process: cation transport (GO:0006812),Biological Process: phospholipid transport (GO:0015914),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: phospholipid-translocating ATPase activity (GO:0004012),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C catalyzing transmembrane movement of substances (GO:0016820);InterPro=ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),ATPase%2C P-type%2C phospholipid-translocating%2C flippase (IPR006539),HAD-like domain (IPR023214),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C cation-transporting%2C domain N (IPR023306);NIAS_FLcDNA=J013084L23;Expression=AK066838;TENOR=Os06t0565900-01;KEGG=Os06t0565900-01 (EC:3.6.3.1)
Chr06	irgsp1_rep	CDS	21811138	21811247	.	+	0	Parent=Os06t0565900-01
Chr06	irgsp1_rep	CDS	21811337	21811447	.	+	1	Parent=Os06t0565900-01
Chr06	irgsp1_rep	CDS	21811687	21811963	.	+	1	Parent=Os06t0565900-01
Chr06	irgsp1_rep	CDS	21812085	21812173	.	+	0	Parent=Os06t0565900-01
Chr06	irgsp1_rep	CDS	21812328	21812415	.	+	1	Parent=Os06t0565900-01
Chr06	irgsp1_rep	CDS	21812518	21812727	.	+	0	Parent=Os06t0565900-01
Chr06	irgsp1_rep	CDS	21812805	21812930	.	+	0	Parent=Os06t0565900-01
Chr06	irgsp1_rep	CDS	21813053	21813151	.	+	0	Parent=Os06t0565900-01
Chr06	irgsp1_rep	CDS	21813249	21813440	.	+	0	Parent=Os06t0565900-01
Chr06	irgsp1_rep	CDS	21814352	21815008	.	+	0	Parent=Os06t0565900-01
Chr06	irgsp1_rep	three_prime_UTR	21815009	21815337	.	+	.	Parent=Os06t0565900-01
Chr06	irgsp1_rep	mRNA	21820173	21822445	.	+	.	ID=Os06t0566100-01;Name=Os06t0566100-01;Locus_id=Os06g0566100;CGSNL Gene Symbol=RBPD;Oryzabase Gene Symbol Synonym(s)=OsRBP-D%2C RBP-D;Oryzabase Gene Name Synonym(s)=RNA-binding protein RBP-D%2C RNA-binding protein D;Note=RNA recognition motif domain domain containing protein.;Transcript_evidence=AK059225 (DDBJ%2C Best hit);ORF_evidence=A3BCV5 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-024-D07;Oryzabase=22716;TENOR=Os06t0566100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	21820173	21820173	.	+	.	Parent=Os06t0566100-01
Chr06	irgsp1_rep	CDS	21820174	21820305	.	+	0	Parent=Os06t0566100-01
Chr06	irgsp1_rep	CDS	21820397	21820499	.	+	0	Parent=Os06t0566100-01
Chr06	irgsp1_rep	CDS	21820626	21820795	.	+	2	Parent=Os06t0566100-01
Chr06	irgsp1_rep	CDS	21821586	21822059	.	+	0	Parent=Os06t0566100-01
Chr06	irgsp1_rep	three_prime_UTR	21822060	21822445	.	+	.	Parent=Os06t0566100-01
Chr06	irgsp1_rep	mRNA	21824420	21826727	.	-	.	ID=Os06t0566201-01;Name=Os06t0566201-01;Locus_id=Os06g0566201;Note=Hypothetical gene.;Transcript_evidence=AK241111 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065091A02;TENOR=Os06t0566201-01
Chr06	irgsp1_rep	five_prime_UTR	21826170	21826727	.	-	.	Parent=Os06t0566201-01
Chr06	irgsp1_rep	five_prime_UTR	21825917	21826066	.	-	.	Parent=Os06t0566201-01
Chr06	irgsp1_rep	five_prime_UTR	21825592	21825606	.	-	.	Parent=Os06t0566201-01
Chr06	irgsp1_rep	CDS	21824900	21825591	.	-	0	Parent=Os06t0566201-01
Chr06	irgsp1_rep	CDS	21824739	21824793	.	-	1	Parent=Os06t0566201-01
Chr06	irgsp1_rep	CDS	21824420	21824549	.	-	0	Parent=Os06t0566201-01
Chr06	irgsp1_rep	mRNA	21824893	21826815	.	+	.	ID=Os06t0566300-00;Name=Os06t0566300-00;Locus_id=Os06g0566300;Oryzabase Gene Symbol Synonym(s)=OsZIP10%2C ZIP10;Oryzabase Gene Name Synonym(s)=zinc transporter 10%2C Zn transporter 10;Note=Similar to zinc transporter 4.;Transcript_evidence=AK363919 (DDBJ);ORF_evidence=Q5Z653 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Biological Process: transmembrane transport (GO:0055085),Biological Process: zinc ion transmembrane transport (GO:0071577),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: zinc ion transmembrane transporter activity (GO:0005385),Molecular Function: metal ion transmembrane transporter activity (GO:0046873);InterPro=Zinc/iron permease (IPR003689),Zinc/iron permease%2C fungal/plant (IPR004698);Oryzabase=13021;TENOR=Os06t0566300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	21824893	21825606	.	+	0	Parent=Os06t0566300-00
Chr06	irgsp1_rep	CDS	21825917	21826066	.	+	0	Parent=Os06t0566300-00
Chr06	irgsp1_rep	CDS	21826170	21826475	.	+	0	Parent=Os06t0566300-00
Chr06	irgsp1_rep	three_prime_UTR	21826476	21826815	.	+	.	Parent=Os06t0566300-00
Chr06	irgsp1_rep	mRNA	21841188	21842446	.	+	.	ID=Os06t0566500-01;Name=Os06t0566500-01;Locus_id=Os06g0566500;Note=Hypothetical conserved gene.;Transcript_evidence=AK069227 (DDBJ%2C Best hit);ORF_evidence=Q5Z650 (UniProt);InterPro=Protein of unknown function DUF761%2C plant (IPR008480);NIAS_FLcDNA=J023018C03;Expression=AK069227;TENOR=Os06t0566500-01;KEGG=Os06t0566500-01
Chr06	irgsp1_rep	five_prime_UTR	21841188	21841261	.	+	.	Parent=Os06t0566500-01
Chr06	irgsp1_rep	CDS	21841262	21841838	.	+	0	Parent=Os06t0566500-01
Chr06	irgsp1_rep	CDS	21842114	21842172	.	+	2	Parent=Os06t0566500-01
Chr06	irgsp1_rep	three_prime_UTR	21842173	21842446	.	+	.	Parent=Os06t0566500-01
Chr06	irgsp1_rep	mRNA	21841195	21842461	.	+	.	ID=Os06t0566500-02;Name=Os06t0566500-02;Locus_id=Os06g0566500;Note=Protein of unknown function DUF761%2C plant domain containing protein.;Transcript_evidence=AK063099 (DDBJ%2C Best hit);ORF_evidence=Q5Z650 (UniProt);InterPro=Protein of unknown function DUF761%2C plant (IPR008480);NIAS_FLcDNA=001-111-C05;Expression=AK063099;TENOR=Os06t0566500-02;KEGG=Os06t0566500-02
Chr06	irgsp1_rep	five_prime_UTR	21841195	21841261	.	+	.	Parent=Os06t0566500-02
Chr06	irgsp1_rep	CDS	21841262	21841822	.	+	0	Parent=Os06t0566500-02
Chr06	irgsp1_rep	CDS	21842132	21842161	.	+	0	Parent=Os06t0566500-02
Chr06	irgsp1_rep	three_prime_UTR	21842162	21842461	.	+	.	Parent=Os06t0566500-02
Chr06	irgsp1_rep	mRNA	21876790	21878108	.	+	.	ID=Os06t0566700-00;Name=Os06t0566700-00;Locus_id=Os06g0566700;Note=Conserved hypothetical protein.;Transcript_evidence=CT837647 (DDBJ%2C Best hit);ORF_evidence=NP_001174852.1 (RefSeq);TENOR=Os06t0566700-00;KEGG=Os06t0566700-00
Chr06	irgsp1_rep	five_prime_UTR	21876790	21876791	.	+	.	Parent=Os06t0566700-00
Chr06	irgsp1_rep	CDS	21876792	21877393	.	+	0	Parent=Os06t0566700-00
Chr06	irgsp1_rep	CDS	21877828	21877882	.	+	1	Parent=Os06t0566700-00
Chr06	irgsp1_rep	three_prime_UTR	21877883	21878108	.	+	.	Parent=Os06t0566700-00
Chr06	irgsp1_rep	mRNA	21879182	21879427	.	-	.	ID=Os06t0566850-00;Name=Os06t0566850-00;Locus_id=Os06g0566850;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A2YCD3 (UniProt);TENOR=Os06t0566850-00;KEGG=Os06t0566850-00
Chr06	irgsp1_rep	CDS	21879182	21879427	.	-	0	Parent=Os06t0566850-00
Chr06	irgsp1_rep	mRNA	21882930	21885294	.	+	.	ID=Os06t0567000-01;Name=Os06t0567000-01;Locus_id=Os06g0567000;Note=Uncharacterised protein family UPF0197 domain containing protein.;Transcript_evidence=AK121337 (DDBJ%2C Best hit);ORF_evidence=A2YE66 (UniProt);InterPro=Uncharacterised protein family UPF0197 (IPR007915);NIAS_FLcDNA=J023120F03;Expression=AK121337;TENOR=Os06t0567000-01;KEGG=Os06t0567000-01
Chr06	irgsp1_rep	five_prime_UTR	21882930	21883011	.	+	.	Parent=Os06t0567000-01
Chr06	irgsp1_rep	CDS	21883012	21883014	.	+	0	Parent=Os06t0567000-01
Chr06	irgsp1_rep	CDS	21883126	21883226	.	+	0	Parent=Os06t0567000-01
Chr06	irgsp1_rep	CDS	21884784	21884862	.	+	1	Parent=Os06t0567000-01
Chr06	irgsp1_rep	CDS	21884948	21884995	.	+	0	Parent=Os06t0567000-01
Chr06	irgsp1_rep	three_prime_UTR	21884996	21885294	.	+	.	Parent=Os06t0567000-01
Chr06	irgsp1_rep	mRNA	21893256	21898174	.	+	.	ID=Os06t0567200-01;Name=Os06t0567200-01;Locus_id=Os06g0567200;RAP-DB Gene Symbol Synonym(s)=OsAAO1;RAP-DB Gene Name Synonym(s)=ascorbate oxidase 1;CGSNL Gene Symbol=AAO1;CGSNL Gene Name=ASCORBATE OXIDASE 1;Oryzabase Gene Symbol Synonym(s)=OsAAO1;Oryzabase Gene Name Synonym(s)=AO-like%2C AO homolog%2C ASCORBATE OXIDASE homolog%2C ascorbate oxidase 1;Note=Ascorbate oxidase%2C Abiotic stress response;Transcript_evidence=AK243375;ORF_evidence=Q5Z645;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: copper ion binding (GO:0005507),Molecular Function: oxidoreductase activity (GO:0016491),Cellular Component: extracellular region (GO:0005576);InterPro=Cupredoxin (IPR008972),L-ascorbate oxidase%2C plants (IPR017760),Multicopper oxidase%2C type 3 (IPR011707),Ascorbate oxidase%2C first cupredoxin domain (IPR034259),Multicopper oxidase%2C type 1 (IPR001117),Multicopper oxidase%2C type 2 (IPR011706),Ascorbate oxidase%2C third cupredoxin domain (IPR034267),Multicopper oxidases%2C conserved site (IPR033138),Multicopper oxidase%2C copper-binding site (IPR002355);NIAS_FLcDNA=J100062O21;Manual Curation=November 30%2C 2017;Literature_PMID=28261251,26220952;Oryzabase=19930;TENOR=Os06t0567200-01;KEGG=Os06t0567200-01 (EC:1.10.3.3)
Chr06	irgsp1_rep	five_prime_UTR	21893256	21893366	.	+	.	Parent=Os06t0567200-01
Chr06	irgsp1_rep	CDS	21893367	21893633	.	+	0	Parent=Os06t0567200-01
Chr06	irgsp1_rep	CDS	21893895	21893987	.	+	0	Parent=Os06t0567200-01
Chr06	irgsp1_rep	CDS	21894355	21894567	.	+	0	Parent=Os06t0567200-01
Chr06	irgsp1_rep	CDS	21896753	21896944	.	+	0	Parent=Os06t0567200-01
Chr06	irgsp1_rep	CDS	21897037	21898017	.	+	0	Parent=Os06t0567200-01
Chr06	irgsp1_rep	three_prime_UTR	21898018	21898174	.	+	.	Parent=Os06t0567200-01
Chr06	irgsp1_rep	mRNA	21896889	21898000	.	-	.	ID=Os06t0567433-00;Name=Os06t0567433-00;Locus_id=Os06g0567433;Note=Hypothetical protein.;Transcript_evidence=BT019237 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0567433-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	21898000	21898000	.	-	.	Parent=Os06t0567433-00
Chr06	irgsp1_rep	CDS	21897035	21897999	.	-	0	Parent=Os06t0567433-00
Chr06	irgsp1_rep	CDS	21896889	21896932	.	-	1	Parent=Os06t0567433-00
Chr06	irgsp1_rep	mRNA	21898980	21902172	.	-	.	ID=Os06t0567666-01;Name=Os06t0567666-01;Locus_id=Os06g0567666;Note=Hypothetical gene.;Transcript_evidence=AK288389 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090027G02;TENOR=Os06t0567666-01;KEGG=Os06t0567666-01
Chr06	irgsp1_rep	five_prime_UTR	21901563	21902172	.	-	.	Parent=Os06t0567666-01
Chr06	irgsp1_rep	CDS	21901242	21901562	.	-	0	Parent=Os06t0567666-01
Chr06	irgsp1_rep	three_prime_UTR	21898980	21901241	.	-	.	Parent=Os06t0567666-01
Chr06	irgsp1_rep	mRNA	21951201	21955132	.	+	.	ID=Os06t0567900-01;Name=Os06t0567900-01;Locus_id=Os06g0567900;RAP-DB Gene Symbol Synonym(s)=AO%2C OsAAO2;RAP-DB Gene Name Synonym(s)=L-ascorbate oxidase%2C ascorbate oxidase 2;CGSNL Gene Symbol=AAO2;CGSNL Gene Name=ASCORBATE OXIDASE 2;Oryzabase Gene Symbol Synonym(s)=OsAAO2%2C L-APX;Oryzabase Gene Name Synonym(s)=AO-like%2C AO homolog%2C ASCORBATE OXIDASE homolog%2C ascorbate oxidase 2;Note=L-ascorbate oxidase%2C Cold%2C salt%2C drought stress response;Transcript_evidence=AK105605;ORF_evidence=Q5Z5T3;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: copper ion binding (GO:0005507),Molecular Function: oxidoreductase activity (GO:0016491),Cellular Component: extracellular region (GO:0005576);InterPro=Cupredoxin (IPR008972),L-ascorbate oxidase%2C plants (IPR017760),Multicopper oxidase%2C type 3 (IPR011707),Multicopper oxidase%2C type 1 (IPR001117),Multicopper oxidase%2C type 2 (IPR011706),Ascorbate oxidase%2C third cupredoxin domain (IPR034267),Multicopper oxidases%2C conserved site (IPR033138),Multicopper oxidase%2C copper-binding site (IPR002355);NIAS_FLcDNA=001-200-A11;Manual Curation=November 29%2C 2017;Literature_PMID=28261251,28059073;Oryzabase=19931;Expression=AK105605;TENOR=Os06t0567900-01;KEGG=Os06t0567900-01 (EC:1.10.3.3)
Chr06	irgsp1_rep	five_prime_UTR	21951201	21951291	.	+	.	Parent=Os06t0567900-01
Chr06	irgsp1_rep	CDS	21951292	21951570	.	+	0	Parent=Os06t0567900-01
Chr06	irgsp1_rep	CDS	21952866	21953192	.	+	0	Parent=Os06t0567900-01
Chr06	irgsp1_rep	CDS	21953408	21953683	.	+	0	Parent=Os06t0567900-01
Chr06	irgsp1_rep	CDS	21953915	21954934	.	+	0	Parent=Os06t0567900-01
Chr06	irgsp1_rep	three_prime_UTR	21954935	21955132	.	+	.	Parent=Os06t0567900-01
Chr06	irgsp1_rep	mRNA	21951310	21954961	.	-	.	ID=Os06t0567950-00;Name=Os06t0567950-00;Locus_id=Os06g0567950;Note=Hypothetical protein.;Transcript_evidence=tplb0051b23 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0567950-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	21954956	21954961	.	-	.	Parent=Os06t0567950-00
Chr06	irgsp1_rep	CDS	21953914	21954955	.	-	0	Parent=Os06t0567950-00
Chr06	irgsp1_rep	CDS	21953406	21953682	.	-	2	Parent=Os06t0567950-00
Chr06	irgsp1_rep	CDS	21952874	21953190	.	-	1	Parent=Os06t0567950-00
Chr06	irgsp1_rep	CDS	21951563	21951573	.	-	2	Parent=Os06t0567950-00
Chr06	irgsp1_rep	three_prime_UTR	21951310	21951562	.	-	.	Parent=Os06t0567950-00
Chr06	irgsp1_rep	mRNA	21955256	21956670	.	-	.	ID=Os06t0568000-01;Name=Os06t0568000-01;Locus_id=Os06g0568000;Note=Nonaspanin (TM9SF) family protein.;Transcript_evidence=AK071892 (DDBJ%2C Best hit);ORF_evidence=E5GCA8 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Nonaspanin (TM9SF) (IPR004240);NIAS_FLcDNA=J013059K02;Expression=AK071892;TENOR=Os06t0568000-01;KEGG=Os06t0568000-01
Chr06	irgsp1_rep	five_prime_UTR	21956669	21956670	.	-	.	Parent=Os06t0568000-01
Chr06	irgsp1_rep	CDS	21955526	21956668	.	-	0	Parent=Os06t0568000-01
Chr06	irgsp1_rep	three_prime_UTR	21955256	21955525	.	-	.	Parent=Os06t0568000-01
Chr06	irgsp1_rep	mRNA	21963202	21966424	.	+	.	ID=Os06t0568101-00;Name=Os06t0568101-00;Locus_id=Os06g0568101;Note=Hypothetical gene.;Transcript_evidence=BT016866 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0568101-00;KEGG=Os06t0568101-00
Chr06	irgsp1_rep	five_prime_UTR	21963202	21963729	.	+	.	Parent=Os06t0568101-00
Chr06	irgsp1_rep	five_prime_UTR	21963812	21963897	.	+	.	Parent=Os06t0568101-00
Chr06	irgsp1_rep	five_prime_UTR	21963992	21964083	.	+	.	Parent=Os06t0568101-00
Chr06	irgsp1_rep	five_prime_UTR	21964346	21964424	.	+	.	Parent=Os06t0568101-00
Chr06	irgsp1_rep	five_prime_UTR	21964775	21964802	.	+	.	Parent=Os06t0568101-00
Chr06	irgsp1_rep	CDS	21964803	21964927	.	+	0	Parent=Os06t0568101-00
Chr06	irgsp1_rep	CDS	21965462	21965607	.	+	1	Parent=Os06t0568101-00
Chr06	irgsp1_rep	CDS	21965789	21965805	.	+	2	Parent=Os06t0568101-00
Chr06	irgsp1_rep	three_prime_UTR	21965806	21965899	.	+	.	Parent=Os06t0568101-00
Chr06	irgsp1_rep	three_prime_UTR	21966195	21966424	.	+	.	Parent=Os06t0568101-00
Chr06	irgsp1_rep	mRNA	21963208	21968733	.	-	.	ID=Os06t0568200-01;Name=Os06t0568200-01;Locus_id=Os06g0568200;Oryzabase Gene Symbol Synonym(s)=OsVHA-B%2C VHA-B;Oryzabase Gene Name Synonym(s)=Vacuolar H-ATPase B subunit%2C vacuolar-ATPase subunit B%2C vacuolar H+-ATPase B subunit%2C V-ATPase B%2C Vacuolar ATPase B subunit;Note=Vacuolar ATPase B subunit.;Transcript_evidence=AK099907 (DDBJ%2C Best hit),AK064802 (DDBJ%2C Best hit);ORF_evidence=Q7FV25 (UniProt);GO=Biological Process: ATP hydrolysis coupled proton transport (GO:0015991),Biological Process: proton transport (GO:0015992),Biological Process: ATP metabolic process (GO:0046034),Cellular Component: proton-transporting two-sector ATPase complex (GO:0016469),Cellular Component: proton-transporting two-sector ATPase complex%2C catalytic domain (GO:0033178),Cellular Component: proton-transporting V-type ATPase%2C V1 domain (GO:0033180),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C catalyzing transmembrane movement of substances (GO:0016820),Molecular Function: hydrogen ion transporting ATP synthase activity%2C rotational mechanism (GO:0046933),Molecular Function: proton-transporting ATPase activity%2C rotational mechanism (GO:0046961);InterPro=ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C nucleotide-binding domain (IPR000194),ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C C-terminal (IPR000793),ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C N-terminal (IPR004100),ATPase%2C V1 complex%2C subunit B (IPR005723),ATPase%2C alpha/beta subunit%2C nucleotide-binding domain%2C active site (IPR020003),V-type ATP synthase regulatory subunit B/beta (IPR022879);NIAS_FLcDNA=J013116A19,J013000D11;Oryzabase=13610;Expression=AK099907;TENOR=Os06t0568200-01;KEGG=Os06t0568200-01 (EC:3.6.3.14)
Chr06	irgsp1_rep	five_prime_UTR	21968621	21968733	.	-	.	Parent=Os06t0568200-01
Chr06	irgsp1_rep	five_prime_UTR	21968111	21968133	.	-	.	Parent=Os06t0568200-01
Chr06	irgsp1_rep	CDS	21968050	21968110	.	-	0	Parent=Os06t0568200-01
Chr06	irgsp1_rep	CDS	21967340	21967395	.	-	2	Parent=Os06t0568200-01
Chr06	irgsp1_rep	CDS	21967151	21967249	.	-	0	Parent=Os06t0568200-01
Chr06	irgsp1_rep	CDS	21966965	21967024	.	-	0	Parent=Os06t0568200-01
Chr06	irgsp1_rep	CDS	21966554	21966665	.	-	0	Parent=Os06t0568200-01
Chr06	irgsp1_rep	CDS	21966211	21966416	.	-	2	Parent=Os06t0568200-01
Chr06	irgsp1_rep	CDS	21965786	21965914	.	-	0	Parent=Os06t0568200-01
Chr06	irgsp1_rep	CDS	21965468	21965605	.	-	0	Parent=Os06t0568200-01
Chr06	irgsp1_rep	CDS	21964783	21964933	.	-	0	Parent=Os06t0568200-01
Chr06	irgsp1_rep	CDS	21964349	21964431	.	-	2	Parent=Os06t0568200-01
Chr06	irgsp1_rep	CDS	21964144	21964191	.	-	0	Parent=Os06t0568200-01
Chr06	irgsp1_rep	CDS	21963984	21964037	.	-	0	Parent=Os06t0568200-01
Chr06	irgsp1_rep	CDS	21963812	21963895	.	-	0	Parent=Os06t0568200-01
Chr06	irgsp1_rep	CDS	21963544	21963729	.	-	0	Parent=Os06t0568200-01
Chr06	irgsp1_rep	three_prime_UTR	21963208	21963543	.	-	.	Parent=Os06t0568200-01
Chr06	irgsp1_rep	mRNA	21963208	21966407	.	-	.	ID=Os06t0568200-02;Name=Os06t0568200-02;Locus_id=Os06g0568200;Oryzabase Gene Symbol Synonym(s)=OsVHA-B%2C VHA-B;Oryzabase Gene Name Synonym(s)=Vacuolar H-ATPase B subunit%2C vacuolar-ATPase subunit B%2C vacuolar H+-ATPase B subunit%2C V-ATPase B%2C Vacuolar ATPase B subunit;Note=Similar to Vacuolar ATPase B subunit.;Transcript_evidence=AK060816 (DDBJ%2C Best hit);ORF_evidence=Q7FV25 (UniProt);GO=Biological Process: ATP hydrolysis coupled proton transport (GO:0015991),Cellular Component: proton-transporting two-sector ATPase complex%2C catalytic domain (GO:0033178),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C catalyzing transmembrane movement of substances (GO:0016820);InterPro=ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C nucleotide-binding domain (IPR000194),ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C C-terminal (IPR000793),ATPase%2C alpha/beta subunit%2C nucleotide-binding domain%2C active site (IPR020003);NIAS_FLcDNA=001-034-A03;Oryzabase=13610;Expression=AK060816;TENOR=Os06t0568200-02;KEGG=Os06t0568200-02 (EC:3.6.3.14)
Chr06	irgsp1_rep	five_prime_UTR	21966406	21966407	.	-	.	Parent=Os06t0568200-02
Chr06	irgsp1_rep	CDS	21966211	21966405	.	-	0	Parent=Os06t0568200-02
Chr06	irgsp1_rep	CDS	21965786	21965914	.	-	0	Parent=Os06t0568200-02
Chr06	irgsp1_rep	CDS	21965468	21965605	.	-	0	Parent=Os06t0568200-02
Chr06	irgsp1_rep	CDS	21964783	21964933	.	-	0	Parent=Os06t0568200-02
Chr06	irgsp1_rep	CDS	21964349	21964431	.	-	2	Parent=Os06t0568200-02
Chr06	irgsp1_rep	CDS	21964144	21964191	.	-	0	Parent=Os06t0568200-02
Chr06	irgsp1_rep	CDS	21963984	21964037	.	-	0	Parent=Os06t0568200-02
Chr06	irgsp1_rep	CDS	21963812	21963895	.	-	0	Parent=Os06t0568200-02
Chr06	irgsp1_rep	CDS	21963544	21963729	.	-	0	Parent=Os06t0568200-02
Chr06	irgsp1_rep	three_prime_UTR	21963208	21963543	.	-	.	Parent=Os06t0568200-02
Chr06	irgsp1_rep	mRNA	21976114	21976749	.	+	.	ID=Os06t0568400-00;Name=Os06t0568400-00;Locus_id=Os06g0568400;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2YE73 (UniProt);TENOR=Os06t0568400-00
Chr06	irgsp1_rep	CDS	21976114	21976749	.	+	0	Parent=Os06t0568400-00
Chr06	irgsp1_rep	mRNA	21982654	21992533	.	-	.	ID=Os06t0568600-01;Name=Os06t0568600-01;Locus_id=Os06g0568600;CGSNL Gene Symbol=KO5;CGSNL Gene Name=ENT-KAURENE OXIDASE 5;Oryzabase Gene Symbol Synonym(s)=OsKO5%2C OSKOL5%2C KOS2%2C CYP701A9%2C OsKO1%2C KO1;Oryzabase Gene Name Synonym(s)=rice ent-kaurene oxidase5%2C cytoChrome P450 701A9;Note=Similar to Ent-kaurene oxidase 1 (Fragment).;Transcript_evidence=AK071743 (DDBJ%2C Best hit);ORF_evidence=Q68YV9 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J023111A19;Oryzabase=5110;Expression=AK071743;TENOR=Os06t0568600-01;KEGG=Os06t0568600-01
Chr06	irgsp1_rep	five_prime_UTR	21992449	21992533	.	-	.	Parent=Os06t0568600-01
Chr06	irgsp1_rep	CDS	21992331	21992448	.	-	0	Parent=Os06t0568600-01
Chr06	irgsp1_rep	CDS	21989077	21989237	.	-	2	Parent=Os06t0568600-01
Chr06	irgsp1_rep	CDS	21984492	21984650	.	-	0	Parent=Os06t0568600-01
Chr06	irgsp1_rep	CDS	21984249	21984389	.	-	0	Parent=Os06t0568600-01
Chr06	irgsp1_rep	CDS	21983790	21984044	.	-	0	Parent=Os06t0568600-01
Chr06	irgsp1_rep	CDS	21983492	21983660	.	-	0	Parent=Os06t0568600-01
Chr06	irgsp1_rep	CDS	21982860	21983368	.	-	2	Parent=Os06t0568600-01
Chr06	irgsp1_rep	three_prime_UTR	21982654	21982859	.	-	.	Parent=Os06t0568600-01
Chr06	irgsp1_rep	mRNA	22009509	22010310	.	+	.	ID=Os06t0569300-00;Name=Os06t0569300-00;Locus_id=Os06g0569300;Note=Conserved hypothetical protein.;Transcript_evidence=AK355522 (DDBJ);ORF_evidence=NP_001174853.1 (RefSeq);TENOR=Os06t0569300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	22009509	22009515	.	+	.	Parent=Os06t0569300-00
Chr06	irgsp1_rep	CDS	22009516	22010310	.	+	0	Parent=Os06t0569300-00
Chr06	irgsp1_rep	mRNA	22020872	22028146	.	-	.	ID=Os06t0569500-01;Name=Os06t0569500-01;Locus_id=Os06g0569500;RAP-DB Gene Symbol Synonym(s)=KO4%2C OsKO4%2C OsKOL4%2C KOS1%2C CYP701A8%2C OsKO2;RAP-DB Gene Name Synonym(s)=ENT-KAURENE OXIDASE 4%2C rice ent-kaurene oxidase4%2C cytoChrome P450 701A8;CGSNL Gene Symbol=KO4;CGSNL Gene Name=ENT-KAURENE OXIDASE 4;Oryzabase Gene Symbol Synonym(s)=OsKO4%2C OsKOL4%2C KOS1%2C CYP701A8%2C OsKO2;Oryzabase Gene Name Synonym(s)=rice ent-kaurene oxidase4%2C cytoChrome P450 701A8;Note=Ent-kaurene oxidase%2C Diterpenoid phytoalexin biosynthesis;Transcript_evidence=AY579214 (Xiushui 11),AK287607;ORF_evidence=Q6GZ42,Q0DBF4;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J065057L02;Manual Curation=September 12%2C 2014;Literature_PMID=22247270;Oryzabase=5109;TENOR=Os06t0569500-01;KEGG=Os06t0569500-01
Chr06	irgsp1_rep	five_prime_UTR	22028123	22028146	.	-	.	Parent=Os06t0569500-01
Chr06	irgsp1_rep	CDS	22027987	22028122	.	-	0	Parent=Os06t0569500-01
Chr06	irgsp1_rep	CDS	22024398	22024558	.	-	2	Parent=Os06t0569500-01
Chr06	irgsp1_rep	CDS	22022890	22023048	.	-	0	Parent=Os06t0569500-01
Chr06	irgsp1_rep	CDS	22022649	22022789	.	-	0	Parent=Os06t0569500-01
Chr06	irgsp1_rep	CDS	22022240	22022494	.	-	0	Parent=Os06t0569500-01
Chr06	irgsp1_rep	CDS	22021986	22022154	.	-	0	Parent=Os06t0569500-01
Chr06	irgsp1_rep	CDS	22021128	22021639	.	-	2	Parent=Os06t0569500-01
Chr06	irgsp1_rep	three_prime_UTR	22020872	22021127	.	-	.	Parent=Os06t0569500-01
Chr06	irgsp1_rep	mRNA	22038354	22041267	.	+	.	ID=Os06t0569601-01;Name=Os06t0569601-01;Locus_id=Os06g0569601;Note=Hypothetical gene.;Transcript_evidence=AK119285 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=001-130-C11;Expression=AK119285;TENOR=Os06t0569601-01;KEGG=Os06t0569601-01
Chr06	irgsp1_rep	five_prime_UTR	22038354	22040220	.	+	.	Parent=Os06t0569601-01
Chr06	irgsp1_rep	CDS	22040221	22040454	.	+	0	Parent=Os06t0569601-01
Chr06	irgsp1_rep	three_prime_UTR	22040455	22040532	.	+	.	Parent=Os06t0569601-01
Chr06	irgsp1_rep	three_prime_UTR	22040600	22041267	.	+	.	Parent=Os06t0569601-01
Chr06	irgsp1_rep	mRNA	22048648	22057757	.	-	.	ID=Os06t0569900-01;Name=Os06t0569900-01;Locus_id=Os06g0569900;RAP-DB Gene Symbol Synonym(s)=OsKO1;RAP-DB Gene Name Synonym(s)=ent-kaurene oxidase 1;CGSNL Gene Symbol=KO1;CGSNL Gene Name=ENT-KAURENE OXIDASE 1;Oryzabase Gene Symbol Synonym(s)=OsKO1%2C OSKO1%2C OSKOL1%2C OsKOS4%2C CYP701A7;Oryzabase Gene Name Synonym(s)=rice ent-kaurene oxidase1%2C cytoChrome P450 701A7;Note=Ent-kaurene oxidase 1%2C Gibberellin biosynthesis%2C Regulation of seed germination;Transcript_evidence=AK100964;ORF_evidence=Q5Z5R7;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 superfamily (IPR036396),CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J023142C08;Manual Curation=January 16%2C 2020;Literature_PMID=31923187;Oryzabase=3140;Expression=AK100964;TENOR=Os06t0569900-01;KEGG=Os06t0569900-01;Subcellular location=plastid (GO:0009536) [N-terminal 150 amino acids], other membrane system [N-terminal 150 amino acids]
Chr06	irgsp1_rep	five_prime_UTR	22057683	22057757	.	-	.	Parent=Os06t0569900-01
Chr06	irgsp1_rep	CDS	22057559	22057682	.	-	0	Parent=Os06t0569900-01
Chr06	irgsp1_rep	CDS	22053212	22053372	.	-	2	Parent=Os06t0569900-01
Chr06	irgsp1_rep	CDS	22052938	22053099	.	-	0	Parent=Os06t0569900-01
Chr06	irgsp1_rep	CDS	22052641	22052781	.	-	0	Parent=Os06t0569900-01
Chr06	irgsp1_rep	CDS	22052303	22052557	.	-	0	Parent=Os06t0569900-01
Chr06	irgsp1_rep	CDS	22051199	22051358	.	-	0	Parent=Os06t0569900-01
Chr06	irgsp1_rep	CDS	22050897	22051090	.	-	2	Parent=Os06t0569900-01
Chr06	irgsp1_rep	CDS	22048791	22049108	.	-	0	Parent=Os06t0569900-01
Chr06	irgsp1_rep	three_prime_UTR	22048648	22048790	.	-	.	Parent=Os06t0569900-01
Chr06	irgsp1_rep	mRNA	22064446	22067449	.	-	.	ID=Os06t0570000-00;Name=Os06t0570000-00;Locus_id=Os06g0570000;Note=Non-protein coding transcript.;Transcript_evidence=CT836269 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os06t0570000-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	exon	22067083	22067449	.	-	.	Parent=Os06t0570000-00
Chr06	irgsp1_rep	exon	22066917	22067002	.	-	.	Parent=Os06t0570000-00
Chr06	irgsp1_rep	exon	22066720	22066782	.	-	.	Parent=Os06t0570000-00
Chr06	irgsp1_rep	exon	22065842	22065953	.	-	.	Parent=Os06t0570000-00
Chr06	irgsp1_rep	exon	22064446	22064783	.	-	.	Parent=Os06t0570000-00
Chr06	irgsp1_rep	mRNA	22073976	22082485	.	-	.	ID=Os06t0570100-01;Name=Os06t0570100-01;Locus_id=Os06g0570100;CGSNL Gene Symbol=D35;CGSNL Gene Name=DWARF TANGINBOZU;Oryzabase Gene Symbol Synonym(s)=d35%2C d35(t)%2C dwf30%2C OsKOL2%2C KOL2%2C KO2%2C OsKO2%2C OSKO2%2C KO%2C CYP701A%2C CYP701A6%2C Os KO2%2C OsKOL2/CYP701A;Oryzabase Gene Name Synonym(s)=tanginbozu dwarf%2C Tan-Ginbozu%2C dwarf-35%2C ent-kaurene oxidase2%2C cytoChrome P450 701A6;Note=Ent-kaurene oxidase (EC 1.14.13.78) (AtKO1) (CytoChrome P450 701A3).;Transcript_evidence=AK066285 (DDBJ%2C Best hit);ORF_evidence=Q68YV8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J013068N08;Oryzabase=68;TENOR=Os06t0570100-01;KEGG=Os06t0570100-01 (EC:1.14.13.78)
Chr06	irgsp1_rep	five_prime_UTR	22082399	22082485	.	-	.	Parent=Os06t0570100-01
Chr06	irgsp1_rep	CDS	22082272	22082398	.	-	0	Parent=Os06t0570100-01
Chr06	irgsp1_rep	CDS	22076480	22076640	.	-	2	Parent=Os06t0570100-01
Chr06	irgsp1_rep	CDS	22076224	22076385	.	-	0	Parent=Os06t0570100-01
Chr06	irgsp1_rep	CDS	22075929	22076069	.	-	0	Parent=Os06t0570100-01
Chr06	irgsp1_rep	CDS	22075591	22075845	.	-	0	Parent=Os06t0570100-01
Chr06	irgsp1_rep	CDS	22075315	22075474	.	-	0	Parent=Os06t0570100-01
Chr06	irgsp1_rep	CDS	22075022	22075215	.	-	2	Parent=Os06t0570100-01
Chr06	irgsp1_rep	CDS	22074137	22074454	.	-	0	Parent=Os06t0570100-01
Chr06	irgsp1_rep	three_prime_UTR	22073976	22074136	.	-	.	Parent=Os06t0570100-01
Chr06	irgsp1_rep	mRNA	22081888	22085143	.	+	.	ID=Os06t0570400-01;Name=Os06t0570400-01;Locus_id=Os06g0570400;Note=Hypothetical protein.;Transcript_evidence=AK289149 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090099N10;TENOR=Os06t0570400-01;KEGG=Os06t0570400-01
Chr06	irgsp1_rep	five_prime_UTR	22081888	22082247	.	+	.	Parent=Os06t0570400-01
Chr06	irgsp1_rep	CDS	22082248	22082511	.	+	0	Parent=Os06t0570400-01
Chr06	irgsp1_rep	three_prime_UTR	22082512	22085143	.	+	.	Parent=Os06t0570400-01
Chr06	irgsp1_rep	mRNA	22081918	22084759	.	+	.	ID=Os06t0570400-02;Name=Os06t0570400-02;Locus_id=Os06g0570400;Note=Hypothetical protein.;Transcript_evidence=AK288296 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090019K14;TENOR=Os06t0570400-02;KEGG=Os06t0570400-02
Chr06	irgsp1_rep	five_prime_UTR	22081918	22082247	.	+	.	Parent=Os06t0570400-02
Chr06	irgsp1_rep	CDS	22082248	22082511	.	+	0	Parent=Os06t0570400-02
Chr06	irgsp1_rep	three_prime_UTR	22082512	22084759	.	+	.	Parent=Os06t0570400-02
Chr06	irgsp1_rep	mRNA	22090108	22091615	.	-	.	ID=Os06t0570566-00;Name=Os06t0570566-00;Locus_id=Os06g0570566;Note=Similar to Ent-kaurene oxidase.;Transcript_evidence=ab initio prediction;ORF_evidence=Q68YV8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os06t0570566-00
Chr06	irgsp1_rep	CDS	22091541	22091615	.	-	0	Parent=Os06t0570566-00
Chr06	irgsp1_rep	CDS	22091168	22091362	.	-	0	Parent=Os06t0570566-00
Chr06	irgsp1_rep	CDS	22090108	22090425	.	-	0	Parent=Os06t0570566-00
Chr06	irgsp1_rep	mRNA	22092977	22095900	.	-	.	ID=Os06t0570600-00;Name=Os06t0570600-00;Locus_id=Os06g0570600;Note=Similar to Ent-kaurene oxidase.;Transcript_evidence=ab initio prediction;ORF_evidence=Q68YV8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);TENOR=Os06t0570600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	22095741	22095900	.	-	0	Parent=Os06t0570600-00
Chr06	irgsp1_rep	CDS	22093904	22094064	.	-	2	Parent=Os06t0570600-00
Chr06	irgsp1_rep	CDS	22093631	22093792	.	-	0	Parent=Os06t0570600-00
Chr06	irgsp1_rep	CDS	22093336	22093476	.	-	0	Parent=Os06t0570600-00
Chr06	irgsp1_rep	CDS	22092977	22093252	.	-	0	Parent=Os06t0570600-00
Chr06	irgsp1_rep	mRNA	22098199	22098952	.	+	.	ID=Os06t0570650-00;Name=Os06t0570650-00;Locus_id=Os06g0570650;Note=Protein kinase-like domain domain containing protein.;Transcript_evidence=FJ901216 (DDBJ);ORF_evidence=A2Z1A7 (UniProt);GO=Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009);TENOR=Os06t0570650-00
Chr06	irgsp1_rep	five_prime_UTR	22098199	22098402	.	+	.	Parent=Os06t0570650-00
Chr06	irgsp1_rep	CDS	22098403	22098624	.	+	0	Parent=Os06t0570650-00
Chr06	irgsp1_rep	three_prime_UTR	22098625	22098952	.	+	.	Parent=Os06t0570650-00
Chr06	irgsp1_rep	mRNA	22119287	22122825	.	+	.	ID=Os06t0570900-00;Name=Os06t0570900-00;Locus_id=Os06g0570900;Oryzabase Gene Symbol Synonym(s)=OsbHLH030;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 030;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=AK361666 (DDBJ);ORF_evidence=Q5Z610 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);Oryzabase=15321;TENOR=Os06t0570900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	22119287	22119293	.	+	.	Parent=Os06t0570900-00
Chr06	irgsp1_rep	CDS	22119294	22119427	.	+	0	Parent=Os06t0570900-00
Chr06	irgsp1_rep	CDS	22119505	22119630	.	+	1	Parent=Os06t0570900-00
Chr06	irgsp1_rep	CDS	22119710	22119830	.	+	1	Parent=Os06t0570900-00
Chr06	irgsp1_rep	CDS	22119943	22120671	.	+	0	Parent=Os06t0570900-00
Chr06	irgsp1_rep	CDS	22120774	22121169	.	+	0	Parent=Os06t0570900-00
Chr06	irgsp1_rep	CDS	22122561	22122674	.	+	0	Parent=Os06t0570900-00
Chr06	irgsp1_rep	three_prime_UTR	22122675	22122825	.	+	.	Parent=Os06t0570900-00
Chr06	irgsp1_rep	mRNA	22123353	22127346	.	-	.	ID=Os06t0571100-01;Name=Os06t0571100-01;Locus_id=Os06g0571100;CGSNL Gene Symbol=HDAC6;CGSNL Gene Name=HISTONE DEACETYLASE 6;Oryzabase Gene Symbol Synonym(s)=OsHDAC6;Oryzabase Gene Name Synonym(s)=histone deacetylase 6;Note=Similar to HDA2 (Fragment).;Transcript_evidence=AK100812 (DDBJ%2C Best hit);ORF_evidence=B6T7F6 (UniProt);InterPro=Histone deacetylase superfamily (IPR000286),Histone deacetylase domain (IPR023801);NIAS_FLcDNA=J023121P03;Oryzabase=21092;Expression=AK100812;TENOR=Os06t0571100-01;KEGG=Os06t0571100-01 (EC:3.5.1.98)
Chr06	irgsp1_rep	five_prime_UTR	22127170	22127346	.	-	.	Parent=Os06t0571100-01
Chr06	irgsp1_rep	CDS	22127062	22127169	.	-	0	Parent=Os06t0571100-01
Chr06	irgsp1_rep	CDS	22126919	22126974	.	-	0	Parent=Os06t0571100-01
Chr06	irgsp1_rep	CDS	22126702	22126819	.	-	1	Parent=Os06t0571100-01
Chr06	irgsp1_rep	CDS	22126515	22126577	.	-	0	Parent=Os06t0571100-01
Chr06	irgsp1_rep	CDS	22126359	22126427	.	-	0	Parent=Os06t0571100-01
Chr06	irgsp1_rep	CDS	22126121	22126287	.	-	0	Parent=Os06t0571100-01
Chr06	irgsp1_rep	CDS	22125200	22125264	.	-	1	Parent=Os06t0571100-01
Chr06	irgsp1_rep	CDS	22125080	22125126	.	-	2	Parent=Os06t0571100-01
Chr06	irgsp1_rep	CDS	22124683	22124727	.	-	0	Parent=Os06t0571100-01
Chr06	irgsp1_rep	CDS	22124534	22124584	.	-	0	Parent=Os06t0571100-01
Chr06	irgsp1_rep	CDS	22123970	22124056	.	-	0	Parent=Os06t0571100-01
Chr06	irgsp1_rep	CDS	22123660	22123747	.	-	0	Parent=Os06t0571100-01
Chr06	irgsp1_rep	CDS	22123469	22123563	.	-	2	Parent=Os06t0571100-01
Chr06	irgsp1_rep	three_prime_UTR	22123353	22123468	.	-	.	Parent=Os06t0571100-01
Chr06	irgsp1_rep	mRNA	22129996	22134139	.	+	.	ID=Os06t0571300-01;Name=Os06t0571300-01;Locus_id=Os06g0571300;Note=Similar to predicted protein.;Transcript_evidence=AK242053 (DDBJ%2C Best hit);ORF_evidence=B9FTU7 (UniProt);NIAS_FLcDNA=J075123I22;TENOR=Os06t0571300-01;KEGG=Os06t0571300-01
Chr06	irgsp1_rep	five_prime_UTR	22129996	22130386	.	+	.	Parent=Os06t0571300-01
Chr06	irgsp1_rep	CDS	22130387	22130471	.	+	0	Parent=Os06t0571300-01
Chr06	irgsp1_rep	CDS	22130585	22130764	.	+	2	Parent=Os06t0571300-01
Chr06	irgsp1_rep	CDS	22131175	22131383	.	+	2	Parent=Os06t0571300-01
Chr06	irgsp1_rep	CDS	22131904	22131939	.	+	0	Parent=Os06t0571300-01
Chr06	irgsp1_rep	three_prime_UTR	22131940	22132052	.	+	.	Parent=Os06t0571300-01
Chr06	irgsp1_rep	three_prime_UTR	22132340	22132554	.	+	.	Parent=Os06t0571300-01
Chr06	irgsp1_rep	three_prime_UTR	22132633	22132891	.	+	.	Parent=Os06t0571300-01
Chr06	irgsp1_rep	three_prime_UTR	22133221	22133377	.	+	.	Parent=Os06t0571300-01
Chr06	irgsp1_rep	three_prime_UTR	22133652	22134139	.	+	.	Parent=Os06t0571300-01
Chr06	irgsp1_rep	mRNA	22135785	22139442	.	-	.	ID=Os06t0571400-01;Name=Os06t0571400-01;Locus_id=Os06g0571400;CGSNL Gene Symbol=EF1G2;CGSNL Gene Name=ELONGATION FACTOR 1 GAMMA 2;Oryzabase Gene Symbol Synonym(s)=OsEF1G2;Note=Similar to Elongation factor 1 gamma-like protein (Fragment).;Transcript_evidence=AK068226 (DDBJ%2C Best hit);ORF_evidence=B7SDI2 (UniProt);GO=Biological Process: translational elongation (GO:0006414),Cellular Component: eukaryotic translation elongation factor 1 complex (GO:0005853),Molecular Function: translation elongation factor activity (GO:0003746),Molecular Function: protein binding (GO:0005515);InterPro=Translation elongation factor EF1B%2C gamma chain%2C conserved (IPR001662),Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=J013146D22;Oryzabase=9576;TENOR=Os06t0571400-01
Chr06	irgsp1_rep	five_prime_UTR	22139313	22139442	.	-	.	Parent=Os06t0571400-01
Chr06	irgsp1_rep	five_prime_UTR	22139127	22139170	.	-	.	Parent=Os06t0571400-01
Chr06	irgsp1_rep	CDS	22139118	22139126	.	-	0	Parent=Os06t0571400-01
Chr06	irgsp1_rep	CDS	22138311	22138460	.	-	0	Parent=Os06t0571400-01
Chr06	irgsp1_rep	CDS	22138174	22138234	.	-	0	Parent=Os06t0571400-01
Chr06	irgsp1_rep	CDS	22138038	22138090	.	-	2	Parent=Os06t0571400-01
Chr06	irgsp1_rep	CDS	22137853	22137954	.	-	0	Parent=Os06t0571400-01
Chr06	irgsp1_rep	CDS	22137278	22137773	.	-	0	Parent=Os06t0571400-01
Chr06	irgsp1_rep	CDS	22135952	22136331	.	-	2	Parent=Os06t0571400-01
Chr06	irgsp1_rep	three_prime_UTR	22135785	22135951	.	-	.	Parent=Os06t0571400-01
Chr06	irgsp1_rep	mRNA	22135802	22139387	.	-	.	ID=Os06t0571400-02;Name=Os06t0571400-02;Locus_id=Os06g0571400;CGSNL Gene Symbol=EF1G2;CGSNL Gene Name=ELONGATION FACTOR 1 GAMMA 2;Oryzabase Gene Symbol Synonym(s)=OsEF1G2;Note=Similar to Elongation factor 1 gamma-like protein (Fragment).;Transcript_evidence=AK104931 (DDBJ%2C Best hit),AK103928 (DDBJ%2C Best hit);ORF_evidence=B7SDI2 (UniProt);GO=Biological Process: translational elongation (GO:0006414),Cellular Component: eukaryotic translation elongation factor 1 complex (GO:0005853),Molecular Function: translation elongation factor activity (GO:0003746),Molecular Function: protein binding (GO:0005515);InterPro=Translation elongation factor EF1B%2C gamma chain%2C conserved (IPR001662),Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=001-045-G02,001-013-D10;Oryzabase=9576;TENOR=Os06t0571400-02
Chr06	irgsp1_rep	five_prime_UTR	22139313	22139387	.	-	.	Parent=Os06t0571400-02
Chr06	irgsp1_rep	five_prime_UTR	22139127	22139170	.	-	.	Parent=Os06t0571400-02
Chr06	irgsp1_rep	CDS	22139118	22139126	.	-	0	Parent=Os06t0571400-02
Chr06	irgsp1_rep	CDS	22138311	22138460	.	-	0	Parent=Os06t0571400-02
Chr06	irgsp1_rep	CDS	22138174	22138234	.	-	0	Parent=Os06t0571400-02
Chr06	irgsp1_rep	CDS	22138038	22138090	.	-	2	Parent=Os06t0571400-02
Chr06	irgsp1_rep	CDS	22137853	22137954	.	-	0	Parent=Os06t0571400-02
Chr06	irgsp1_rep	CDS	22137278	22137773	.	-	0	Parent=Os06t0571400-02
Chr06	irgsp1_rep	CDS	22135952	22136331	.	-	2	Parent=Os06t0571400-02
Chr06	irgsp1_rep	three_prime_UTR	22135802	22135951	.	-	.	Parent=Os06t0571400-02
Chr06	irgsp1_rep	mRNA	22155054	22157054	.	+	.	ID=Os06t0571800-01;Name=Os06t0571800-01;Locus_id=Os06g0571800;CGSNL Gene Symbol=GATA16;CGSNL Gene Name=GATA TRANSCRIPTION FACTOR 16;Oryzabase Gene Symbol Synonym(s)=OsGATA16%2C OsGNC%2C GNC;Oryzabase Gene Name Synonym(s)=GATA transcription factor 16%2C GATA factor 16%2C "GATA%2C NITRATE-INDUCIBLE%2C CARBON-METABOLISM INVOLVED";Note=Similar to GATA transcription factor 20.;Transcript_evidence=AK068715 (DDBJ%2C Best hit);ORF_evidence=B6SS40 (UniProt);NIAS_FLcDNA=J013168M08;Oryzabase=20499;Expression=AK068715;TENOR=Os06t0571800-01;KEGG=Os06t0571800-01
Chr06	irgsp1_rep	five_prime_UTR	22155054	22155238	.	+	.	Parent=Os06t0571800-01
Chr06	irgsp1_rep	CDS	22155239	22155469	.	+	0	Parent=Os06t0571800-01
Chr06	irgsp1_rep	CDS	22156488	22156589	.	+	0	Parent=Os06t0571800-01
Chr06	irgsp1_rep	three_prime_UTR	22156590	22157054	.	+	.	Parent=Os06t0571800-01
Chr06	irgsp1_rep	mRNA	22155054	22157042	.	+	.	ID=Os06t0571800-02;Name=Os06t0571800-02;Locus_id=Os06g0571800;CGSNL Gene Symbol=GATA16;CGSNL Gene Name=GATA TRANSCRIPTION FACTOR 16;Oryzabase Gene Symbol Synonym(s)=OsGATA16%2C OsGNC%2C GNC;Oryzabase Gene Name Synonym(s)=GATA transcription factor 16%2C GATA factor 16%2C "GATA%2C NITRATE-INDUCIBLE%2C CARBON-METABOLISM INVOLVED";Note=Similar to GATA transcription factor 3 (AtGATA-3).;Transcript_evidence=AK069851 (DDBJ%2C Best hit);ORF_evidence=B6SS40 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Zinc finger%2C GATA-type (IPR000679),Zinc finger%2C NHR/GATA-type (IPR013088);NIAS_FLcDNA=J023034D16;Oryzabase=20499;Expression=AK069851;TENOR=Os06t0571800-02;KEGG=Os06t0571800-02
Chr06	irgsp1_rep	five_prime_UTR	22155054	22155238	.	+	.	Parent=Os06t0571800-02
Chr06	irgsp1_rep	CDS	22155239	22155505	.	+	0	Parent=Os06t0571800-02
Chr06	irgsp1_rep	CDS	22155629	22156027	.	+	0	Parent=Os06t0571800-02
Chr06	irgsp1_rep	CDS	22156132	22156244	.	+	0	Parent=Os06t0571800-02
Chr06	irgsp1_rep	CDS	22156374	22156638	.	+	1	Parent=Os06t0571800-02
Chr06	irgsp1_rep	three_prime_UTR	22156639	22157042	.	+	.	Parent=Os06t0571800-02
Chr06	irgsp1_rep	mRNA	22183203	22185176	.	+	.	ID=Os06t0572000-01;Name=Os06t0572000-01;Locus_id=Os06g0572000;Note=Hypothetical protein.;Transcript_evidence=AK070117 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023040I21;Expression=AK070117;TENOR=Os06t0572000-01;KEGG=Os06t0572000-01
Chr06	irgsp1_rep	five_prime_UTR	22183203	22183432	.	+	.	Parent=Os06t0572000-01
Chr06	irgsp1_rep	five_prime_UTR	22183514	22183521	.	+	.	Parent=Os06t0572000-01
Chr06	irgsp1_rep	CDS	22183522	22183779	.	+	0	Parent=Os06t0572000-01
Chr06	irgsp1_rep	three_prime_UTR	22183780	22185176	.	+	.	Parent=Os06t0572000-01
Chr06	irgsp1_rep	mRNA	22192264	22195029	.	-	.	ID=Os06t0572300-00;Name=Os06t0572300-00;Locus_id=Os06g0572300;CGSNL Gene Symbol=CKX10;CGSNL Gene Name=CYTOKININ  OXIDASE/DEHYDROGENASE 10;Oryzabase Gene Symbol Synonym(s)=OsCKX10;Oryzabase Gene Name Synonym(s)=cytokinin oxidase 10;Note=Similar to Cytokinin dehydrogenase 10.;Transcript_evidence=GU160401 (DDBJ);ORF_evidence=Q5Z620 (UniProt);GO=Biological Process: cytokinin metabolic process (GO:0009690),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: cytokinin dehydrogenase activity (GO:0019139),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=FAD linked oxidase%2C N-terminal (IPR006094),Cytokinin dehydrogenase 1%2C FAD/cytokinin binding domain (IPR015345),FAD-linked oxidase-like%2C C-terminal (IPR016164),FAD-binding%2C type 2 (IPR016166),FAD-binding%2C type 2%2C subdomain 1 (IPR016167),FAD-linked oxidase%2C FAD-binding%2C subdomain 2 (IPR016168);Oryzabase=8400;TENOR=Os06t0572300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	22194348	22195029	.	-	0	Parent=Os06t0572300-00
Chr06	irgsp1_rep	CDS	22193783	22194189	.	-	2	Parent=Os06t0572300-00
Chr06	irgsp1_rep	CDS	22193095	22193364	.	-	0	Parent=Os06t0572300-00
Chr06	irgsp1_rep	CDS	22192264	22192644	.	-	0	Parent=Os06t0572300-00
Chr06	irgsp1_rep	mRNA	22192343	22194736	.	+	.	ID=Os06t0572350-00;Name=Os06t0572350-00;Locus_id=Os06g0572350;Note=Hypothetical protein.;Transcript_evidence=tplb0030c22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0572350-00
Chr06	irgsp1_rep	five_prime_UTR	22192343	22192616	.	+	.	Parent=Os06t0572350-00
Chr06	irgsp1_rep	five_prime_UTR	22193081	22193122	.	+	.	Parent=Os06t0572350-00
Chr06	irgsp1_rep	CDS	22193123	22193413	.	+	0	Parent=Os06t0572350-00
Chr06	irgsp1_rep	CDS	22193797	22193877	.	+	0	Parent=Os06t0572350-00
Chr06	irgsp1_rep	three_prime_UTR	22193878	22194170	.	+	.	Parent=Os06t0572350-00
Chr06	irgsp1_rep	three_prime_UTR	22194326	22194736	.	+	.	Parent=Os06t0572350-00
Chr06	irgsp1_rep	mRNA	22197414	22200008	.	-	.	ID=Os06t0572400-01;Name=Os06t0572400-01;Locus_id=Os06g0572400;CGSNL Gene Symbol=TET9;CGSNL Gene Name=TETRASPANIN 9;Oryzabase Gene Symbol Synonym(s)=OsTET9;Oryzabase Gene Name Synonym(s)=tetraspanin 9;Note=Tetraspanin domain containing protein.;Transcript_evidence=AK070273 (DDBJ%2C Best hit);ORF_evidence=NP_179548.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Tetraspanin (IPR018499);NIAS_FLcDNA=J023046E08;Oryzabase=20314;Expression=AK070273;TENOR=Os06t0572400-01;KEGG=Os06t0572400-01
Chr06	irgsp1_rep	five_prime_UTR	22199942	22200008	.	-	.	Parent=Os06t0572400-01
Chr06	irgsp1_rep	CDS	22199432	22199941	.	-	0	Parent=Os06t0572400-01
Chr06	irgsp1_rep	CDS	22197743	22198051	.	-	0	Parent=Os06t0572400-01
Chr06	irgsp1_rep	three_prime_UTR	22197414	22197742	.	-	.	Parent=Os06t0572400-01
Chr06	irgsp1_rep	mRNA	22237119	22241120	.	+	.	ID=Os06t0573500-01;Name=Os06t0573500-01;Locus_id=Os06g0573500;Note=Hypothetical conserved gene.;Transcript_evidence=AK287437 (DDBJ%2C Best hit);ORF_evidence=B9FTV1 (UniProt);NIAS_FLcDNA=J043014J10;TENOR=Os06t0573500-01;KEGG=Os06t0573500-01
Chr06	irgsp1_rep	five_prime_UTR	22237119	22239167	.	+	.	Parent=Os06t0573500-01
Chr06	irgsp1_rep	CDS	22239168	22239350	.	+	0	Parent=Os06t0573500-01
Chr06	irgsp1_rep	three_prime_UTR	22239351	22241120	.	+	.	Parent=Os06t0573500-01
Chr06	irgsp1_rep	mRNA	22245386	22251547	.	+	.	ID=Os06t0573600-01;Name=Os06t0573600-01;Locus_id=Os06g0573600;CGSNL Gene Symbol=BGAL2;CGSNL Gene Name=BETA-GALACTOSIDASE 2;Oryzabase Gene Symbol Synonym(s)=OsBgal2%2C OsBGal2;Oryzabase Gene Name Synonym(s)=Beta-galactosidase 9%2C Lactase 9;Note=Similar to Beta-galactosidase precursor (EC 3.2.1.23) (Lactase).;Transcript_evidence=AK102756 (DDBJ%2C Best hit);ORF_evidence=A2YEA5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 35 (IPR001944),Galactose-binding domain-like (IPR008979),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 35%2C conserved site (IPR019801);NIAS_FLcDNA=J033107B05;Oryzabase=8290;Expression=AK102756;TENOR=Os06t0573600-01;KEGG=Os06t0573600-01 (EC:3.2.1.23)
Chr06	irgsp1_rep	five_prime_UTR	22245386	22245731	.	+	.	Parent=Os06t0573600-01
Chr06	irgsp1_rep	CDS	22245732	22245884	.	+	0	Parent=Os06t0573600-01
Chr06	irgsp1_rep	CDS	22245971	22246066	.	+	0	Parent=Os06t0573600-01
Chr06	irgsp1_rep	CDS	22246182	22246294	.	+	0	Parent=Os06t0573600-01
Chr06	irgsp1_rep	CDS	22246410	22246476	.	+	1	Parent=Os06t0573600-01
Chr06	irgsp1_rep	CDS	22246561	22246653	.	+	0	Parent=Os06t0573600-01
Chr06	irgsp1_rep	CDS	22246788	22246931	.	+	0	Parent=Os06t0573600-01
Chr06	irgsp1_rep	CDS	22247513	22247601	.	+	0	Parent=Os06t0573600-01
Chr06	irgsp1_rep	CDS	22247730	22247835	.	+	1	Parent=Os06t0573600-01
Chr06	irgsp1_rep	CDS	22247939	22248026	.	+	0	Parent=Os06t0573600-01
Chr06	irgsp1_rep	CDS	22248124	22248242	.	+	2	Parent=Os06t0573600-01
Chr06	irgsp1_rep	CDS	22248733	22249067	.	+	0	Parent=Os06t0573600-01
Chr06	irgsp1_rep	CDS	22249644	22249753	.	+	1	Parent=Os06t0573600-01
Chr06	irgsp1_rep	CDS	22249890	22249999	.	+	2	Parent=Os06t0573600-01
Chr06	irgsp1_rep	CDS	22250123	22250233	.	+	0	Parent=Os06t0573600-01
Chr06	irgsp1_rep	CDS	22250690	22250994	.	+	0	Parent=Os06t0573600-01
Chr06	irgsp1_rep	CDS	22251087	22251195	.	+	1	Parent=Os06t0573600-01
Chr06	irgsp1_rep	three_prime_UTR	22251196	22251547	.	+	.	Parent=Os06t0573600-01
Chr06	irgsp1_rep	mRNA	22248152	22251719	.	+	.	ID=Os06t0573600-02;Name=Os06t0573600-02;Locus_id=Os06g0573600;CGSNL Gene Symbol=BGAL2;CGSNL Gene Name=BETA-GALACTOSIDASE 2;Oryzabase Gene Symbol Synonym(s)=OsBgal2%2C OsBGal2;Oryzabase Gene Name Synonym(s)=Beta-galactosidase 9%2C Lactase 9;Note=Similar to Beta-galactosidase.;Transcript_evidence=AK105619 (DDBJ%2C Best hit);ORF_evidence=A2YEA5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 35 (IPR001944),Galactose-binding domain-like (IPR008979);NIAS_FLcDNA=001-200-C02;Oryzabase=8290;Expression=AK105619;TENOR=Os06t0573600-02;KEGG=Os06t0573600-02
Chr06	irgsp1_rep	five_prime_UTR	22248152	22248152	.	+	.	Parent=Os06t0573600-02
Chr06	irgsp1_rep	CDS	22248153	22248242	.	+	0	Parent=Os06t0573600-02
Chr06	irgsp1_rep	CDS	22248733	22249067	.	+	0	Parent=Os06t0573600-02
Chr06	irgsp1_rep	CDS	22249644	22249753	.	+	1	Parent=Os06t0573600-02
Chr06	irgsp1_rep	CDS	22249890	22249999	.	+	2	Parent=Os06t0573600-02
Chr06	irgsp1_rep	CDS	22250123	22250233	.	+	0	Parent=Os06t0573600-02
Chr06	irgsp1_rep	CDS	22250690	22250994	.	+	0	Parent=Os06t0573600-02
Chr06	irgsp1_rep	CDS	22251087	22251195	.	+	1	Parent=Os06t0573600-02
Chr06	irgsp1_rep	three_prime_UTR	22251196	22251719	.	+	.	Parent=Os06t0573600-02
Chr06	irgsp1_rep	mRNA	22250682	22251772	.	+	.	ID=Os06t0573600-03;Name=Os06t0573600-03;Locus_id=Os06g0573600;CGSNL Gene Symbol=BGAL2;CGSNL Gene Name=BETA-GALACTOSIDASE 2;Oryzabase Gene Symbol Synonym(s)=OsBgal2%2C OsBGal2;Oryzabase Gene Name Synonym(s)=Beta-galactosidase 9%2C Lactase 9;Note=Similar to Beta-galactosidase.;Transcript_evidence=AK059741 (DDBJ%2C Best hit);ORF_evidence=A2YEA5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 35 (IPR001944),Galactose-binding domain-like (IPR008979);NIAS_FLcDNA=006-202-F09;Oryzabase=8290;Expression=AK059741;TENOR=Os06t0573600-03;KEGG=Os06t0573600-03
Chr06	irgsp1_rep	five_prime_UTR	22250682	22250689	.	+	.	Parent=Os06t0573600-03
Chr06	irgsp1_rep	CDS	22250690	22250994	.	+	0	Parent=Os06t0573600-03
Chr06	irgsp1_rep	CDS	22251087	22251195	.	+	1	Parent=Os06t0573600-03
Chr06	irgsp1_rep	three_prime_UTR	22251196	22251772	.	+	.	Parent=Os06t0573600-03
Chr06	irgsp1_rep	mRNA	22254354	22255983	.	+	.	ID=Os06t0573800-01;Name=Os06t0573800-01;Locus_id=Os06g0573800;Note=Fanconi Anaemia group E protein%2C C-terminal domain containing protein.;Transcript_evidence=AK106254 (DDBJ%2C Best hit);ORF_evidence=A2YEA6 (UniProt);InterPro=Fanconi Anaemia group E protein%2C C-terminal (IPR021025);NIAS_FLcDNA=002-100-E07;Expression=AK106254;TENOR=Os06t0573800-01;KEGG=Os06t0573800-01
Chr06	irgsp1_rep	five_prime_UTR	22254354	22254402	.	+	.	Parent=Os06t0573800-01
Chr06	irgsp1_rep	CDS	22254403	22255857	.	+	0	Parent=Os06t0573800-01
Chr06	irgsp1_rep	three_prime_UTR	22255858	22255983	.	+	.	Parent=Os06t0573800-01
Chr06	irgsp1_rep	mRNA	22258061	22258711	.	-	.	ID=Os06t0573900-00;Name=Os06t0573900-00;Locus_id=Os06g0573900;Oryzabase Gene Name Synonym(s)=1-Aminocyclopropane-1-carboxylic acid oxidase;Note=Similar to 1-aminocyclopropane-1-carboxylic acid oxidase.;Transcript_evidence=Z99964 (DDBJ);ORF_evidence=Q84QS2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);Oryzabase=21958;TENOR=Os06t0573900-00
Chr06	irgsp1_rep	CDS	22258061	22258711	.	-	0	Parent=Os06t0573900-00
Chr06	irgsp1_rep	mRNA	22260986	22262038	.	+	.	ID=Os06t0574000-00;Name=Os06t0574000-00;Locus_id=Os06g0574000;Note=Hypothetical conserved gene.;Transcript_evidence=EU953345 (DDBJ);ORF_evidence=Q5Z7K7 (UniProt);TENOR=Os06t0574000-00;KEGG=Os06t0574000-00
Chr06	irgsp1_rep	CDS	22260986	22262038	.	+	0	Parent=Os06t0574000-00
Chr06	irgsp1_rep	mRNA	22269820	22270920	.	+	.	ID=Os06t0574100-00;Name=Os06t0574100-00;Locus_id=Os06g0574100;Note=Similar to predicted protein.;Transcript_evidence=CT836297 (DDBJ%2C Best hit);ORF_evidence=Q8L9U0 (UniProt);TENOR=Os06t0574100-00;KEGG=Os06t0574100-00
Chr06	irgsp1_rep	CDS	22269820	22269878	.	+	0	Parent=Os06t0574100-00
Chr06	irgsp1_rep	CDS	22270398	22270590	.	+	1	Parent=Os06t0574100-00
Chr06	irgsp1_rep	three_prime_UTR	22270591	22270920	.	+	.	Parent=Os06t0574100-00
Chr06	irgsp1_rep	mRNA	22271338	22275542	.	-	.	ID=Os06t0574200-01;Name=Os06t0574200-01;Locus_id=Os06g0574200;CGSNL Gene Symbol=RLCK207;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 207;Oryzabase Gene Symbol Synonym(s)=OsPUB47%2C OsRLCK207;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 47%2C U-box protein 47%2C Receptor-like Cytoplasmic Kinase 207;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK289262 (DDBJ%2C Best hit);ORF_evidence=NP_001057924.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: response to stress (GO:0006950),Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),U box domain (IPR003613),UspA (IPR006016),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J100086G10;Oryzabase=17838;TENOR=Os06t0574200-01;KEGG=Os06t0574200-01
Chr06	irgsp1_rep	five_prime_UTR	22275417	22275542	.	-	.	Parent=Os06t0574200-01
Chr06	irgsp1_rep	CDS	22275158	22275416	.	-	0	Parent=Os06t0574200-01
Chr06	irgsp1_rep	CDS	22274939	22275063	.	-	2	Parent=Os06t0574200-01
Chr06	irgsp1_rep	CDS	22274725	22274840	.	-	0	Parent=Os06t0574200-01
Chr06	irgsp1_rep	CDS	22273950	22274071	.	-	1	Parent=Os06t0574200-01
Chr06	irgsp1_rep	CDS	22273535	22273860	.	-	2	Parent=Os06t0574200-01
Chr06	irgsp1_rep	CDS	22273329	22273439	.	-	0	Parent=Os06t0574200-01
Chr06	irgsp1_rep	CDS	22272715	22273143	.	-	0	Parent=Os06t0574200-01
Chr06	irgsp1_rep	CDS	22271847	22272596	.	-	0	Parent=Os06t0574200-01
Chr06	irgsp1_rep	CDS	22271583	22271765	.	-	0	Parent=Os06t0574200-01
Chr06	irgsp1_rep	three_prime_UTR	22271338	22271582	.	-	.	Parent=Os06t0574200-01
Chr06	irgsp1_rep	mRNA	22271415	22275302	.	+	.	ID=Os06t0574266-00;Name=Os06t0574266-00;Locus_id=Os06g0574266;Note=Non-protein coding transcript.;Transcript_evidence=tplb0048h01 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os06t0574266-00
Chr06	irgsp1_rep	exon	22271415	22271750	.	+	.	Parent=Os06t0574266-00
Chr06	irgsp1_rep	exon	22271833	22272577	.	+	.	Parent=Os06t0574266-00
Chr06	irgsp1_rep	exon	22272701	22273117	.	+	.	Parent=Os06t0574266-00
Chr06	irgsp1_rep	exon	22273309	22273402	.	+	.	Parent=Os06t0574266-00
Chr06	irgsp1_rep	exon	22273517	22273838	.	+	.	Parent=Os06t0574266-00
Chr06	irgsp1_rep	exon	22273932	22274063	.	+	.	Parent=Os06t0574266-00
Chr06	irgsp1_rep	exon	22274720	22274832	.	+	.	Parent=Os06t0574266-00
Chr06	irgsp1_rep	exon	22274933	22275063	.	+	.	Parent=Os06t0574266-00
Chr06	irgsp1_rep	exon	22275158	22275302	.	+	.	Parent=Os06t0574266-00
Chr06	irgsp1_rep	mRNA	22281790	22288023	.	-	.	ID=Os06t0574332-00;Name=Os06t0574332-00;Locus_id=Os06g0574332;Note=Conserved hypothetical protein.;Transcript_evidence=BT019060 (DDBJ);ORF_evidence=B9FTV6 (UniProt);TENOR=Os06t0574332-00
Chr06	irgsp1_rep	five_prime_UTR	22287888	22288023	.	-	.	Parent=Os06t0574332-00
Chr06	irgsp1_rep	CDS	22287879	22287887	.	-	0	Parent=Os06t0574332-00
Chr06	irgsp1_rep	CDS	22282047	22282247	.	-	0	Parent=Os06t0574332-00
Chr06	irgsp1_rep	three_prime_UTR	22282046	22282046	.	-	.	Parent=Os06t0574332-00
Chr06	irgsp1_rep	three_prime_UTR	22281790	22281937	.	-	.	Parent=Os06t0574332-00
Chr06	irgsp1_rep	mRNA	22292246	22295245	.	-	.	ID=Os06t0574400-01;Name=Os06t0574400-01;Locus_id=Os06g0574400;Note=Hypothetical conserved gene.;Transcript_evidence=AK243130 (DDBJ%2C Best hit);ORF_evidence=Q5Z7K3 (UniProt);NIAS_FLcDNA=J100029L17;TENOR=Os06t0574400-01;KEGG=Os06t0574400-01
Chr06	irgsp1_rep	five_prime_UTR	22295244	22295245	.	-	.	Parent=Os06t0574400-01
Chr06	irgsp1_rep	CDS	22293258	22295243	.	-	0	Parent=Os06t0574400-01
Chr06	irgsp1_rep	CDS	22292759	22292962	.	-	0	Parent=Os06t0574400-01
Chr06	irgsp1_rep	CDS	22292516	22292671	.	-	0	Parent=Os06t0574400-01
Chr06	irgsp1_rep	three_prime_UTR	22292246	22292515	.	-	.	Parent=Os06t0574400-01
Chr06	irgsp1_rep	mRNA	22299146	22301030	.	-	.	ID=Os06t0574450-00;Name=Os06t0574450-00;Locus_id=Os06g0574450;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FTV6 (UniProt);InterPro=RNA polymerase II-associated protein 1%2C C-terminal (IPR013929),RNA polymerase II-associated protein 1%2C N-terminal (IPR013930);TENOR=Os06t0574450-00;KEGG=Os06t0574450-00
Chr06	irgsp1_rep	CDS	22300767	22301030	.	-	0	Parent=Os06t0574450-00
Chr06	irgsp1_rep	CDS	22299835	22300660	.	-	0	Parent=Os06t0574450-00
Chr06	irgsp1_rep	CDS	22299634	22299746	.	-	2	Parent=Os06t0574450-00
Chr06	irgsp1_rep	CDS	22299146	22299337	.	-	0	Parent=Os06t0574450-00
Chr06	irgsp1_rep	mRNA	22307181	22313271	.	+	.	ID=Os06t0574500-01;Name=Os06t0574500-01;Locus_id=Os06g0574500;CGSNL Gene Symbol=PP2A-1;CGSNL Gene Name=PROTEIN PHOSPHATASE 2A CATALYTIC SUBUNIT 1;Oryzabase Gene Symbol Synonym(s)=OsPP2A-1%2C PP2A1%2C OsPP88;Oryzabase Gene Name Synonym(s)=protein phosphatase 2A catalytic subunit 1%2C Serine/threonine-protein phosphatase PP2A-1 catalytic subunit%2C Protein phosphatase 88;Note=Protein phosphatase 2A.;Transcript_evidence=AK071838 (DDBJ%2C Best hit);ORF_evidence=Q0DBD3 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Metallophosphoesterase domain (IPR004843),Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (IPR006186);NIAS_FLcDNA=J023115P10;Oryzabase=6263;Expression=AK071838;TENOR=Os06t0574500-01;KEGG=Os06t0574500-01 (EC:3.1.3.16)
Chr06	irgsp1_rep	five_prime_UTR	22307181	22307352	.	+	.	Parent=Os06t0574500-01
Chr06	irgsp1_rep	CDS	22307353	22307605	.	+	0	Parent=Os06t0574500-01
Chr06	irgsp1_rep	CDS	22308552	22308666	.	+	2	Parent=Os06t0574500-01
Chr06	irgsp1_rep	CDS	22310635	22310743	.	+	1	Parent=Os06t0574500-01
Chr06	irgsp1_rep	CDS	22310847	22310924	.	+	0	Parent=Os06t0574500-01
Chr06	irgsp1_rep	CDS	22312020	22312211	.	+	0	Parent=Os06t0574500-01
Chr06	irgsp1_rep	CDS	22312815	22312988	.	+	0	Parent=Os06t0574500-01
Chr06	irgsp1_rep	three_prime_UTR	22312989	22313271	.	+	.	Parent=Os06t0574500-01
Chr06	irgsp1_rep	mRNA	22316330	22318345	.	+	.	ID=Os06t0574550-01;Name=Os06t0574550-01;Locus_id=Os06g0574550;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK243478 (DDBJ%2C Best hit);ORF_evidence=Q5Z607 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J100072L21;TENOR=Os06t0574550-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	22316330	22318081	.	+	0	Parent=Os06t0574550-01
Chr06	irgsp1_rep	three_prime_UTR	22318082	22318345	.	+	.	Parent=Os06t0574550-01
Chr06	irgsp1_rep	mRNA	22310643	22312998	.	-	.	ID=Os06t0574601-00;Name=Os06t0574601-00;Locus_id=Os06g0574601;Note=Non-protein coding transcript.;Transcript_evidence=BT018461 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0574601-00
Chr06	irgsp1_rep	exon	22312799	22312998	.	-	.	Parent=Os06t0574601-00
Chr06	irgsp1_rep	exon	22311989	22312195	.	-	.	Parent=Os06t0574601-00
Chr06	irgsp1_rep	exon	22310643	22310790	.	-	.	Parent=Os06t0574601-00
Chr06	irgsp1_rep	mRNA	22318277	22318978	.	-	.	ID=Os06t0574700-01;Name=Os06t0574700-01;Locus_id=Os06g0574700;Note=Hypothetical conserved gene.;Transcript_evidence=AK070321 (DDBJ%2C Best hit);ORF_evidence=B9FTV8 (UniProt);NIAS_FLcDNA=J023051E12;Expression=AK070321;TENOR=Os06t0574700-01;KEGG=Os06t0574700-01
Chr06	irgsp1_rep	five_prime_UTR	22318946	22318978	.	-	.	Parent=Os06t0574700-01
Chr06	irgsp1_rep	CDS	22318742	22318945	.	-	0	Parent=Os06t0574700-01
Chr06	irgsp1_rep	three_prime_UTR	22318277	22318741	.	-	.	Parent=Os06t0574700-01
Chr06	irgsp1_rep	mRNA	22315214	22318950	.	-	.	ID=Os06t0574700-02;Name=Os06t0574700-02;Locus_id=Os06g0574700;Note=Hypothetical gene.;Transcript_evidence=AK101570 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033050I01;Expression=AK101570;TENOR=Os06t0574700-02;KEGG=Os06t0574700-02
Chr06	irgsp1_rep	five_prime_UTR	22316953	22318950	.	-	.	Parent=Os06t0574700-02
Chr06	irgsp1_rep	CDS	22316740	22316952	.	-	0	Parent=Os06t0574700-02
Chr06	irgsp1_rep	three_prime_UTR	22315214	22316739	.	-	.	Parent=Os06t0574700-02
Chr06	irgsp1_rep	mRNA	22327746	22328915	.	-	.	ID=Os06t0574900-01;Name=Os06t0574900-01;Locus_id=Os06g0574900;Note=Conserved hypothetical protein.;Transcript_evidence=AK109218 (DDBJ%2C Best hit);ORF_evidence=A2YEB6 (UniProt);NIAS_FLcDNA=002-156-E02;Expression=AK109218;TENOR=Os06t0574900-01;KEGG=Os06t0574900-01
Chr06	irgsp1_rep	five_prime_UTR	22328879	22328915	.	-	.	Parent=Os06t0574900-01
Chr06	irgsp1_rep	CDS	22328863	22328878	.	-	0	Parent=Os06t0574900-01
Chr06	irgsp1_rep	CDS	22328622	22328680	.	-	2	Parent=Os06t0574900-01
Chr06	irgsp1_rep	CDS	22328247	22328466	.	-	0	Parent=Os06t0574900-01
Chr06	irgsp1_rep	CDS	22328000	22328097	.	-	2	Parent=Os06t0574900-01
Chr06	irgsp1_rep	three_prime_UTR	22327746	22327999	.	-	.	Parent=Os06t0574900-01
Chr06	irgsp1_rep	mRNA	22330411	22334653	.	-	.	ID=Os06t0574950-00;Name=Os06t0574950-00;Locus_id=Os06g0574950;Note=Hypothetical gene.;Transcript_evidence=CT836313 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os06t0574950-00;KEGG=Os06t0574950-00
Chr06	irgsp1_rep	five_prime_UTR	22334541	22334653	.	-	.	Parent=Os06t0574950-00
Chr06	irgsp1_rep	five_prime_UTR	22330698	22330708	.	-	.	Parent=Os06t0574950-00
Chr06	irgsp1_rep	CDS	22330467	22330697	.	-	0	Parent=Os06t0574950-00
Chr06	irgsp1_rep	three_prime_UTR	22330411	22330466	.	-	.	Parent=Os06t0574950-00
Chr06	irgsp1_rep	mRNA	22332680	22333906	.	+	.	ID=Os06t0575000-00;Name=Os06t0575000-00;Locus_id=Os06g0575000;Note=Similar to D-mannose binding lectin family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QY68 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os06t0575000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	22332680	22333906	.	+	0	Parent=Os06t0575000-00
Chr06	irgsp1_rep	mRNA	22336632	22337797	.	+	.	ID=Os06t0575100-01;Name=Os06t0575100-01;Locus_id=Os06g0575100;Note=Conserved hypothetical protein.;Transcript_evidence=AK243159 (DDBJ%2C Best hit);ORF_evidence=A3BD00 (UniProt);NIAS_FLcDNA=J100034A01;TENOR=Os06t0575100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	22336632	22336678	.	+	.	Parent=Os06t0575100-01
Chr06	irgsp1_rep	CDS	22336679	22337461	.	+	0	Parent=Os06t0575100-01
Chr06	irgsp1_rep	three_prime_UTR	22337462	22337797	.	+	.	Parent=Os06t0575100-01
Chr06	irgsp1_rep	mRNA	22352087	22354757	.	+	.	ID=Os06t0575400-01;Name=Os06t0575400-01;Locus_id=Os06g0575400;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK111890 (DDBJ%2C Best hit);ORF_evidence=Q2QY68 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Epidermal growth factor-like%2C type 3 (IPR000742),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),PAN-1 domain (IPR003014),Apple-like (IPR003609),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),S-receptor-like serine/threonine-protein kinase (IPR024171);NIAS_FLcDNA=J033071M18;Expression=AK111890;TENOR=Os06t0575400-01;KEGG=Os06t0575400-01
Chr06	irgsp1_rep	five_prime_UTR	22352087	22352157	.	+	.	Parent=Os06t0575400-01
Chr06	irgsp1_rep	CDS	22352158	22354566	.	+	0	Parent=Os06t0575400-01
Chr06	irgsp1_rep	three_prime_UTR	22354567	22354757	.	+	.	Parent=Os06t0575400-01
Chr06	irgsp1_rep	mRNA	22356485	22359985	.	-	.	ID=Os06t0575500-00;Name=Os06t0575500-00;Locus_id=Os06g0575500;Note=Similar to HAT family dimerisation domain containing protein.;Transcript_evidence=EU973161 (DDBJ);ORF_evidence=Q53RM1 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677);InterPro=Zinc finger%2C BED-type predicted (IPR003656),Ribonuclease H-like (IPR012337);TENOR=Os06t0575500-00
Chr06	irgsp1_rep	five_prime_UTR	22359821	22359985	.	-	.	Parent=Os06t0575500-00
Chr06	irgsp1_rep	five_prime_UTR	22358394	22358401	.	-	.	Parent=Os06t0575500-00
Chr06	irgsp1_rep	CDS	22357686	22358393	.	-	0	Parent=Os06t0575500-00
Chr06	irgsp1_rep	three_prime_UTR	22356485	22357685	.	-	.	Parent=Os06t0575500-00
Chr06	irgsp1_rep	mRNA	22375628	22379297	.	-	.	ID=Os06t0575900-00;Name=Os06t0575900-00;Locus_id=Os06g0575900;Note=Conserved hypothetical protein.;Transcript_evidence=AK375141 (DDBJ);ORF_evidence=Q5Z5Z4 (UniProt);TENOR=Os06t0575900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	22377904	22379297	.	-	0	Parent=Os06t0575900-00
Chr06	irgsp1_rep	CDS	22377226	22377229	.	-	1	Parent=Os06t0575900-00
Chr06	irgsp1_rep	three_prime_UTR	22376785	22377225	.	-	.	Parent=Os06t0575900-00
Chr06	irgsp1_rep	three_prime_UTR	22375628	22375993	.	-	.	Parent=Os06t0575900-00
Chr06	irgsp1_rep	mRNA	22368183	22371242	.	+	.	ID=Os06t0576200-00;Name=Os06t0576200-00;Locus_id=Os06g0576200;Note=Conserved hypothetical protein.;Transcript_evidence=AF015523 (DDBJ);ORF_evidence=Q5Z5Z6 (UniProt);TENOR=Os06t0576200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	22368183	22368497	.	+	.	Parent=Os06t0576200-00
Chr06	irgsp1_rep	five_prime_UTR	22370604	22370840	.	+	.	Parent=Os06t0576200-00
Chr06	irgsp1_rep	CDS	22370841	22371242	.	+	0	Parent=Os06t0576200-00
Chr06	irgsp1_rep	mRNA	22388362	22389398	.	+	.	ID=Os06t0576600-00;Name=Os06t0576600-00;Locus_id=Os06g0576600;Note=Hypothetical conserved gene.;Transcript_evidence=EU977041 (DDBJ);ORF_evidence=NP_001145665.1 (RefSeq);InterPro=Myb/SANT-like domain (IPR024752);TENOR=Os06t0576600-00;KEGG=Os06t0576600-00
Chr06	irgsp1_rep	five_prime_UTR	22388362	22388435	.	+	.	Parent=Os06t0576600-00
Chr06	irgsp1_rep	CDS	22388436	22388675	.	+	0	Parent=Os06t0576600-00
Chr06	irgsp1_rep	CDS	22388759	22389067	.	+	0	Parent=Os06t0576600-00
Chr06	irgsp1_rep	three_prime_UTR	22389068	22389398	.	+	.	Parent=Os06t0576600-00
Chr06	irgsp1_rep	mRNA	22496918	22498316	.	+	.	ID=Os06t0576800-00;Name=Os06t0576800-00;Locus_id=Os06g0576800;Note=Myb/SANT-like domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FTW1 (UniProt);InterPro=Myb/SANT-like domain (IPR024752);TENOR=Os06t0576800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	22496918	22497195	.	+	0	Parent=Os06t0576800-00
Chr06	irgsp1_rep	CDS	22497273	22497504	.	+	1	Parent=Os06t0576800-00
Chr06	irgsp1_rep	CDS	22497885	22498316	.	+	0	Parent=Os06t0576800-00
Chr06	irgsp1_rep	mRNA	22397526	22398687	.	+	.	ID=Os06t0577350-00;Name=Os06t0577350-00;Locus_id=Os06g0577350;Note=Hypothetical protein.;Transcript_evidence=FP099851 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0577350-00
Chr06	irgsp1_rep	five_prime_UTR	22397526	22397612	.	+	.	Parent=Os06t0577350-00
Chr06	irgsp1_rep	five_prime_UTR	22397697	22397952	.	+	.	Parent=Os06t0577350-00
Chr06	irgsp1_rep	CDS	22397953	22398225	.	+	0	Parent=Os06t0577350-00
Chr06	irgsp1_rep	three_prime_UTR	22398226	22398687	.	+	.	Parent=Os06t0577350-00
Chr06	irgsp1_rep	mRNA	22488680	22491650	.	-	.	ID=Os06t0578100-00;Name=Os06t0578100-00;Locus_id=Os06g0578100;Note=Similar to Retrotransposon protein.;Transcript_evidence=BT054858 (DDBJ);ORF_evidence=B6SVT8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=von Willebrand factor%2C type A (IPR002035);TENOR=Os06t0578100-00;KEGG=Os06t0578100-00
Chr06	irgsp1_rep	five_prime_UTR	22491631	22491650	.	-	.	Parent=Os06t0578100-00
Chr06	irgsp1_rep	CDS	22491175	22491630	.	-	0	Parent=Os06t0578100-00
Chr06	irgsp1_rep	CDS	22488680	22490224	.	-	0	Parent=Os06t0578100-00
Chr06	irgsp1_rep	mRNA	22522400	22526017	.	+	.	ID=Os06t0578700-01;Name=Os06t0578700-01;Locus_id=Os06g0578700;Note=von Willebrand factor%2C type A domain containing protein.;Transcript_evidence=AK243263 (DDBJ%2C Best hit);ORF_evidence=NP_001174863.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=von Willebrand factor%2C type A (IPR002035);NIAS_FLcDNA=J100049C12;TENOR=Os06t0578700-01;KEGG=Os06t0578700-01
Chr06	irgsp1_rep	five_prime_UTR	22522400	22522474	.	+	.	Parent=Os06t0578700-01
Chr06	irgsp1_rep	CDS	22522475	22522540	.	+	0	Parent=Os06t0578700-01
Chr06	irgsp1_rep	CDS	22523028	22523435	.	+	0	Parent=Os06t0578700-01
Chr06	irgsp1_rep	CDS	22524360	22525580	.	+	0	Parent=Os06t0578700-01
Chr06	irgsp1_rep	CDS	22525666	22525719	.	+	0	Parent=Os06t0578700-01
Chr06	irgsp1_rep	three_prime_UTR	22525720	22526017	.	+	.	Parent=Os06t0578700-01
Chr06	irgsp1_rep	mRNA	22556192	22558566	.	+	.	ID=Os06t0579100-01;Name=Os06t0579100-01;Locus_id=Os06g0579100;Note=Conserved hypothetical protein.;Transcript_evidence=AK068691 (DDBJ%2C Best hit);ORF_evidence=B8ATT0 (UniProt);NIAS_FLcDNA=J013162E13;TENOR=Os06t0579100-01
Chr06	irgsp1_rep	five_prime_UTR	22556192	22557276	.	+	.	Parent=Os06t0579100-01
Chr06	irgsp1_rep	five_prime_UTR	22557341	22557740	.	+	.	Parent=Os06t0579100-01
Chr06	irgsp1_rep	five_prime_UTR	22558018	22558352	.	+	.	Parent=Os06t0579100-01
Chr06	irgsp1_rep	CDS	22558353	22558566	.	+	0	Parent=Os06t0579100-01
Chr06	irgsp1_rep	mRNA	22566775	22571502	.	+	.	ID=Os06t0579200-01;Name=Os06t0579200-01;Locus_id=Os06g0579200;RAP-DB Gene Symbol Synonym(s)=OsLCT1;RAP-DB Gene Name Synonym(s)=Low-affinity cation transporter 1;CGSNL Gene Symbol=LCT1;CGSNL Gene Name=LOW-AFFINITY CATION TRANSPORTER 1;Oryzabase Gene Symbol Synonym(s)=OsLCT1;Oryzabase Gene Name Synonym(s)=Low-affinity cation transporter 1;Note=Low-affinity cation transporter%2C Regulation of cadmium transport to the grains;Transcript_evidence=AB905364;ORF_evidence=C7J3I4;Manual Curation=May 10%2C 2017;Literature_PMID=24627964,22160725;Oryzabase=10204;Subcellular location=plasma membrane (GO:0005886)
Chr06	irgsp1_rep	CDS	22566775	22566880	.	+	0	Parent=Os06t0579200-01
Chr06	irgsp1_rep	CDS	22567004	22567113	.	+	2	Parent=Os06t0579200-01
Chr06	irgsp1_rep	CDS	22570183	22571502	.	+	0	Parent=Os06t0579200-01
Chr06	irgsp1_rep	mRNA	22560982	22561397	.	+	.	ID=Os06t0579201-01;Name=Os06t0579201-01;Locus_id=Os06g0579201;Note=Conserved hypothetical protein.;Transcript_evidence=AK241059 (DDBJ%2C Best hit);ORF_evidence=NP_001174865.1 (RefSeq);NIAS_FLcDNA=J065064L15;TENOR=Os06t0579201-01;KEGG=Os06t0579201-01
Chr06	irgsp1_rep	five_prime_UTR	22560982	22561133	.	+	.	Parent=Os06t0579201-01
Chr06	irgsp1_rep	CDS	22561134	22561304	.	+	0	Parent=Os06t0579201-01
Chr06	irgsp1_rep	three_prime_UTR	22561305	22561397	.	+	.	Parent=Os06t0579201-01
Chr06	irgsp1_rep	mRNA	22588231	22588683	.	-	.	ID=Os06t0579400-01;Name=Os06t0579400-01;Locus_id=Os06g0579400;Note=Non-protein coding transcript.;Transcript_evidence=AK111053 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-175-C10;TENOR=Os06t0579400-01
Chr06	irgsp1_rep	exon	22588231	22588683	.	-	.	Parent=Os06t0579400-01
Chr06	irgsp1_rep	mRNA	22594115	22598173	.	-	.	ID=Os06t0579600-01;Name=Os06t0579600-01;Locus_id=Os06g0579600;Note=Similar to F-box domain containing protein.;Transcript_evidence=AK067582 (DDBJ%2C Best hit);ORF_evidence=Q2QQI3 (UniProt);NIAS_FLcDNA=J013112G19;Expression=AK067582;TENOR=Os06t0579600-01;KEGG=Os06t0579600-01
Chr06	irgsp1_rep	five_prime_UTR	22595049	22598173	.	-	.	Parent=Os06t0579600-01
Chr06	irgsp1_rep	CDS	22594650	22595048	.	-	0	Parent=Os06t0579600-01
Chr06	irgsp1_rep	three_prime_UTR	22594115	22594649	.	-	.	Parent=Os06t0579600-01
Chr06	irgsp1_rep	mRNA	22598231	22598990	.	+	.	ID=Os06t0579800-01;Name=Os06t0579800-01;Locus_id=Os06g0579800;Note=Hypothetical conserved gene.;Transcript_evidence=AK242935 (DDBJ%2C Best hit);ORF_evidence=B9FTW5 (UniProt);NIAS_FLcDNA=J090086O17;TENOR=Os06t0579800-01;KEGG=Os06t0579800-01
Chr06	irgsp1_rep	five_prime_UTR	22598231	22598670	.	+	.	Parent=Os06t0579800-01
Chr06	irgsp1_rep	CDS	22598671	22598874	.	+	0	Parent=Os06t0579800-01
Chr06	irgsp1_rep	three_prime_UTR	22598875	22598990	.	+	.	Parent=Os06t0579800-01
Chr06	irgsp1_rep	mRNA	22613998	22617392	.	+	.	ID=Os06t0580100-01;Name=Os06t0580100-01;Locus_id=Os06g0580100;Note=Similar to cDNA clone:006-306-H07%2C full insert sequence.;Transcript_evidence=AK059529 (DDBJ%2C Best hit);ORF_evidence=B7E6C5 (UniProt);NIAS_FLcDNA=001-029-D06;Expression=AK059529;TENOR=Os06t0580100-01;KEGG=Os06t0580100-01
Chr06	irgsp1_rep	five_prime_UTR	22613998	22614119	.	+	.	Parent=Os06t0580100-01
Chr06	irgsp1_rep	five_prime_UTR	22616783	22616814	.	+	.	Parent=Os06t0580100-01
Chr06	irgsp1_rep	CDS	22616815	22617267	.	+	0	Parent=Os06t0580100-01
Chr06	irgsp1_rep	three_prime_UTR	22617268	22617392	.	+	.	Parent=Os06t0580100-01
Chr06	irgsp1_rep	mRNA	22613999	22616281	.	+	.	ID=Os06t0580100-02;Name=Os06t0580100-02;Locus_id=Os06g0580100;Note=Hypothetical gene.;Transcript_evidence=AK069433 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023025M19;Expression=AK069433;TENOR=Os06t0580100-02;KEGG=Os06t0580100-02
Chr06	irgsp1_rep	five_prime_UTR	22613999	22615495	.	+	.	Parent=Os06t0580100-02
Chr06	irgsp1_rep	CDS	22615496	22615924	.	+	0	Parent=Os06t0580100-02
Chr06	irgsp1_rep	three_prime_UTR	22615925	22616281	.	+	.	Parent=Os06t0580100-02
Chr06	irgsp1_rep	mRNA	22655734	22664963	.	-	.	ID=Os06t0581000-01;Name=Os06t0581000-01;Locus_id=Os06g0581000;CGSNL Gene Symbol=NRT1.2;CGSNL Gene Name=NITRATE TRANSPORTER 1.2;Oryzabase Gene Symbol Synonym(s)=OsNRT1.2;Oryzabase Gene Name Synonym(s)=nitrate transporter 1.2;Note=Similar to Nitrate transporter NTL1.;Transcript_evidence=AK071803 (DDBJ%2C Best hit);ORF_evidence=NP_001150745.1 (RefSeq);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J023111M02;Oryzabase=19898;Expression=AK071803;TENOR=Os06t0581000-01;KEGG=Os06t0581000-01
Chr06	irgsp1_rep	five_prime_UTR	22664852	22664963	.	-	.	Parent=Os06t0581000-01
Chr06	irgsp1_rep	CDS	22664849	22664851	.	-	0	Parent=Os06t0581000-01
Chr06	irgsp1_rep	CDS	22664621	22664735	.	-	0	Parent=Os06t0581000-01
Chr06	irgsp1_rep	CDS	22662980	22663197	.	-	2	Parent=Os06t0581000-01
Chr06	irgsp1_rep	CDS	22655894	22657330	.	-	0	Parent=Os06t0581000-01
Chr06	irgsp1_rep	three_prime_UTR	22655734	22655893	.	-	.	Parent=Os06t0581000-01
Chr06	irgsp1_rep	mRNA	22655891	22664750	.	+	.	ID=Os06t0581151-00;Name=Os06t0581151-00;Locus_id=Os06g0581151;Note=Hypothetical protein.;Transcript_evidence=tplb0061c10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0581151-00
Chr06	irgsp1_rep	CDS	22655891	22657329	.	+	0	Parent=Os06t0581151-00
Chr06	irgsp1_rep	CDS	22662979	22663197	.	+	1	Parent=Os06t0581151-00
Chr06	irgsp1_rep	CDS	22664621	22664750	.	+	1	Parent=Os06t0581151-00
Chr06	irgsp1_rep	mRNA	22699043	22704499	.	+	.	ID=Os06t0581300-01;Name=Os06t0581300-01;Locus_id=Os06g0581300;Note=Hypothetical conserved gene.;Transcript_evidence=AK073185 (DDBJ%2C Best hit);ORF_evidence=Q5VPL7 (UniProt);InterPro=Protein of unknown function DUF1475 (IPR009943);NIAS_FLcDNA=J033001M17;Expression=AK073185;TENOR=Os06t0581300-01;KEGG=Os06t0581300-01
Chr06	irgsp1_rep	five_prime_UTR	22699043	22699371	.	+	.	Parent=Os06t0581300-01
Chr06	irgsp1_rep	CDS	22699372	22699499	.	+	0	Parent=Os06t0581300-01
Chr06	irgsp1_rep	CDS	22699996	22700047	.	+	1	Parent=Os06t0581300-01
Chr06	irgsp1_rep	CDS	22700864	22700937	.	+	0	Parent=Os06t0581300-01
Chr06	irgsp1_rep	CDS	22701053	22701142	.	+	1	Parent=Os06t0581300-01
Chr06	irgsp1_rep	CDS	22701653	22701796	.	+	1	Parent=Os06t0581300-01
Chr06	irgsp1_rep	CDS	22702705	22702756	.	+	1	Parent=Os06t0581300-01
Chr06	irgsp1_rep	CDS	22703359	22703432	.	+	0	Parent=Os06t0581300-01
Chr06	irgsp1_rep	CDS	22704104	22704218	.	+	1	Parent=Os06t0581300-01
Chr06	irgsp1_rep	three_prime_UTR	22704219	22704499	.	+	.	Parent=Os06t0581300-01
Chr06	irgsp1_rep	mRNA	22699280	22704976	.	+	.	ID=Os06t0581300-02;Name=Os06t0581300-02;Locus_id=Os06g0581300;Note=Protein of unknown function DUF1475 family protein.;Transcript_evidence=AK070987 (DDBJ%2C Best hit);ORF_evidence=B8B432 (UniProt);InterPro=Protein of unknown function DUF1475 (IPR009943);NIAS_FLcDNA=J023076E04;Expression=AK070987;TENOR=Os06t0581300-02;KEGG=Os06t0581300-02
Chr06	irgsp1_rep	five_prime_UTR	22699280	22699371	.	+	.	Parent=Os06t0581300-02
Chr06	irgsp1_rep	CDS	22699372	22699499	.	+	0	Parent=Os06t0581300-02
Chr06	irgsp1_rep	CDS	22699996	22700047	.	+	1	Parent=Os06t0581300-02
Chr06	irgsp1_rep	CDS	22700864	22700937	.	+	0	Parent=Os06t0581300-02
Chr06	irgsp1_rep	CDS	22701053	22701142	.	+	1	Parent=Os06t0581300-02
Chr06	irgsp1_rep	CDS	22701653	22701796	.	+	1	Parent=Os06t0581300-02
Chr06	irgsp1_rep	CDS	22702705	22702756	.	+	1	Parent=Os06t0581300-02
Chr06	irgsp1_rep	CDS	22703359	22703432	.	+	0	Parent=Os06t0581300-02
Chr06	irgsp1_rep	CDS	22704104	22704193	.	+	1	Parent=Os06t0581300-02
Chr06	irgsp1_rep	CDS	22704757	22704820	.	+	1	Parent=Os06t0581300-02
Chr06	irgsp1_rep	three_prime_UTR	22704821	22704976	.	+	.	Parent=Os06t0581300-02
Chr06	irgsp1_rep	mRNA	22710845	22714666	.	-	.	ID=Os06t0581500-01;Name=Os06t0581500-01;Locus_id=Os06g0581500;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK099816 (DDBJ%2C Best hit);ORF_evidence=XP_002440678.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013099M07;Expression=AK099816;TENOR=Os06t0581500-01;KEGG=Os06t0581500-01
Chr06	irgsp1_rep	five_prime_UTR	22714603	22714666	.	-	.	Parent=Os06t0581500-01
Chr06	irgsp1_rep	CDS	22711575	22714602	.	-	0	Parent=Os06t0581500-01
Chr06	irgsp1_rep	CDS	22711017	22711408	.	-	2	Parent=Os06t0581500-01
Chr06	irgsp1_rep	three_prime_UTR	22710845	22711016	.	-	.	Parent=Os06t0581500-01
Chr06	irgsp1_rep	mRNA	22727501	22728105	.	+	.	ID=Os06t0581701-01;Name=Os06t0581701-01;Locus_id=Os06g0581701;Note=Conserved hypothetical protein.;Transcript_evidence=AK242217 (DDBJ%2C Best hit);ORF_evidence=NP_001174867.1 (RefSeq);NIAS_FLcDNA=J075173C18;TENOR=Os06t0581701-01;KEGG=Os06t0581701-01
Chr06	irgsp1_rep	five_prime_UTR	22727501	22727501	.	+	.	Parent=Os06t0581701-01
Chr06	irgsp1_rep	CDS	22727502	22727580	.	+	0	Parent=Os06t0581701-01
Chr06	irgsp1_rep	CDS	22727719	22727798	.	+	2	Parent=Os06t0581701-01
Chr06	irgsp1_rep	three_prime_UTR	22727799	22728105	.	+	.	Parent=Os06t0581701-01
Chr06	irgsp1_rep	mRNA	22766881	22767564	.	+	.	ID=Os06t0582400-01;Name=Os06t0582400-01;Locus_id=Os06g0582400;Note=Conserved hypothetical protein.;Transcript_evidence=AK063377 (DDBJ%2C Best hit);ORF_evidence=Q67UF8 (UniProt);NIAS_FLcDNA=001-114-F04;TENOR=Os06t0582400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	22766881	22766881	.	+	.	Parent=Os06t0582400-01
Chr06	irgsp1_rep	CDS	22766882	22767541	.	+	0	Parent=Os06t0582400-01
Chr06	irgsp1_rep	three_prime_UTR	22767542	22767564	.	+	.	Parent=Os06t0582400-01
Chr06	irgsp1_rep	mRNA	22779409	22781032	.	+	.	ID=Os06t0582600-01;Name=Os06t0582600-01;Locus_id=Os06g0582600;Note=Similar to Cysteine proteinase.;Transcript_evidence=AK067453 (DDBJ%2C Best hit);ORF_evidence=NP_001151293.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase%2C cysteine peptidase active site (IPR000169),Peptidase C1A%2C papain C-terminal (IPR000668),Peptidase C1A%2C papain (IPR013128),Proteinase inhibitor I29%2C cathepsin propeptide (IPR013201);NIAS_FLcDNA=J013106H06;Expression=AK067453;TENOR=Os06t0582600-01;KEGG=Os06t0582600-01
Chr06	irgsp1_rep	five_prime_UTR	22779409	22779563	.	+	.	Parent=Os06t0582600-01
Chr06	irgsp1_rep	CDS	22779564	22780032	.	+	0	Parent=Os06t0582600-01
Chr06	irgsp1_rep	CDS	22780293	22780897	.	+	2	Parent=Os06t0582600-01
Chr06	irgsp1_rep	three_prime_UTR	22780898	22781032	.	+	.	Parent=Os06t0582600-01
Chr06	irgsp1_rep	mRNA	22794359	22800196	.	-	.	ID=Os06t0583400-01;Name=Os06t0583400-01;Locus_id=Os06g0583400;RAP-DB Gene Symbol Synonym(s)=HDAC1%2C OsHDAC1%2C HDA702;RAP-DB Gene Name Synonym(s)=CLASS-1 TYPE HISTONE DEACETYLASE 1%2C class-1 type histone deacetylase 1%2C histone deacetylase 1;CGSNL Gene Symbol=HDAC1;CGSNL Gene Name=CLASS-1 TYPE HISTONE DEACETYLASE 1;Oryzabase Gene Symbol Synonym(s)=OsHDAC1%2C HDA702%2C OsHDA702%2C HDA1%2C OsHDA1%2C HDT702%2C OsHDT702;Oryzabase Gene Name Synonym(s)=class-1 type histone deacetylase 1%2C histone deacetylase 1;Note=Class-I type histone deacetylase%2C Seedling root growth;Transcript_evidence=AF513382 (Genbank);ORF_evidence=Q7Y0Y8 (UniProt);GO=Biological Process: histone deacetylation (GO:0016575),Molecular Function: histone deacetylase activity (GO:0004407);InterPro=Histone deacetylase superfamily (IPR000286),Histone deacetylase (IPR003084),Histone deacetylase domain (IPR023801);NIAS_FLcDNA=J013158M05;Manual Curation=September 2%2C 2009;Literature_PMID=12581311,19453457,19664599;Oryzabase=3108;Expression=AK068682,AF513382;TENOR=Os06t0583400-01;KEGG=Os06t0583400-01 (EC:3.5.1.98)
Chr06	irgsp1_rep	five_prime_UTR	22800114	22800196	.	-	.	Parent=Os06t0583400-01
Chr06	irgsp1_rep	CDS	22799574	22800113	.	-	0	Parent=Os06t0583400-01
Chr06	irgsp1_rep	CDS	22799058	22799498	.	-	0	Parent=Os06t0583400-01
Chr06	irgsp1_rep	CDS	22798370	22798600	.	-	0	Parent=Os06t0583400-01
Chr06	irgsp1_rep	CDS	22797725	22797816	.	-	0	Parent=Os06t0583400-01
Chr06	irgsp1_rep	CDS	22797568	22797631	.	-	1	Parent=Os06t0583400-01
Chr06	irgsp1_rep	CDS	22795071	22795151	.	-	0	Parent=Os06t0583400-01
Chr06	irgsp1_rep	CDS	22794836	22794943	.	-	0	Parent=Os06t0583400-01
Chr06	irgsp1_rep	three_prime_UTR	22794359	22794835	.	-	.	Parent=Os06t0583400-01
Chr06	irgsp1_rep	mRNA	22796510	22800197	.	-	.	ID=Os06t0583400-02;Name=Os06t0583400-02;Locus_id=Os06g0583400;CGSNL Gene Symbol=HDAC1;CGSNL Gene Name=CLASS-1 TYPE HISTONE DEACETYLASE 1;Oryzabase Gene Symbol Synonym(s)=OsHDAC1%2C HDA702%2C OsHDA702%2C HDA1%2C OsHDA1%2C HDT702%2C OsHDT702;Oryzabase Gene Name Synonym(s)=class-1 type histone deacetylase 1%2C histone deacetylase 1;Note=Similar to Histone deacetylase.;Transcript_evidence=AK068051 (DDBJ%2C Best hit);ORF_evidence=B9FTW9 (UniProt);GO=Biological Process: histone deacetylation (GO:0016575),Molecular Function: histone deacetylase activity (GO:0004407);InterPro=Histone deacetylase superfamily (IPR000286),Histone deacetylase (IPR003084),Histone deacetylase domain (IPR023801);NIAS_FLcDNA=J013135B02;Oryzabase=3108;Expression=AK068051;TENOR=Os06t0583400-02;KEGG=Os06t0583400-02 (EC:3.5.1.98)
Chr06	irgsp1_rep	five_prime_UTR	22800114	22800197	.	-	.	Parent=Os06t0583400-02
Chr06	irgsp1_rep	CDS	22799574	22800113	.	-	0	Parent=Os06t0583400-02
Chr06	irgsp1_rep	CDS	22799058	22799498	.	-	0	Parent=Os06t0583400-02
Chr06	irgsp1_rep	CDS	22798370	22798600	.	-	0	Parent=Os06t0583400-02
Chr06	irgsp1_rep	CDS	22797725	22797816	.	-	0	Parent=Os06t0583400-02
Chr06	irgsp1_rep	CDS	22797553	22797631	.	-	1	Parent=Os06t0583400-02
Chr06	irgsp1_rep	three_prime_UTR	22796510	22797552	.	-	.	Parent=Os06t0583400-02
Chr06	irgsp1_rep	mRNA	22794574	22800130	.	+	.	ID=Os06t0583501-00;Name=Os06t0583501-00;Locus_id=Os06g0583501;Note=Hypothetical protein.;Transcript_evidence=tplb0043n03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0583501-00
Chr06	irgsp1_rep	five_prime_UTR	22794574	22794948	.	+	.	Parent=Os06t0583501-00
Chr06	irgsp1_rep	five_prime_UTR	22795076	22795154	.	+	.	Parent=Os06t0583501-00
Chr06	irgsp1_rep	five_prime_UTR	22797653	22797816	.	+	.	Parent=Os06t0583501-00
Chr06	irgsp1_rep	five_prime_UTR	22798370	22798600	.	+	.	Parent=Os06t0583501-00
Chr06	irgsp1_rep	five_prime_UTR	22799058	22799465	.	+	.	Parent=Os06t0583501-00
Chr06	irgsp1_rep	CDS	22799466	22799498	.	+	0	Parent=Os06t0583501-00
Chr06	irgsp1_rep	CDS	22799574	22800130	.	+	0	Parent=Os06t0583501-00
Chr06	irgsp1_rep	mRNA	22811046	22813269	.	+	.	ID=Os06t0583600-00;Name=Os06t0583600-00;Locus_id=Os06g0583600;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK370415 (DDBJ);ORF_evidence=A3BD30 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os06t0583600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	22811046	22811126	.	+	.	Parent=Os06t0583600-00
Chr06	irgsp1_rep	CDS	22811127	22812756	.	+	0	Parent=Os06t0583600-00
Chr06	irgsp1_rep	CDS	22812902	22813269	.	+	2	Parent=Os06t0583600-00
Chr06	irgsp1_rep	mRNA	22821117	22823386	.	+	.	ID=Os06t0583900-01;Name=Os06t0583900-01;Locus_id=Os06g0583900;Oryzabase Gene Symbol Synonym(s)=OsPLL9%2C PLL9;Oryzabase Gene Name Synonym(s)=Pectate lyase-like 9;Note=Similar to Pectate lyase homolog (EC 4.2.2.2) (Fragment).;Transcript_evidence=AK072583 (DDBJ%2C Best hit);ORF_evidence=B8B435 (UniProt);GO=Molecular Function: pectate lyase activity (GO:0030570);InterPro=Pectate lyase/Amb allergen (IPR002022),Pectate lyase%2C N-terminal (IPR007524),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),AmbAllergen (IPR018082);NIAS_FLcDNA=J023132G06;Oryzabase=22494;Expression=AK072583;TENOR=Os06t0583900-01;KEGG=Os06t0583900-01 (EC:4.2.2.2)
Chr06	irgsp1_rep	five_prime_UTR	22821117	22821311	.	+	.	Parent=Os06t0583900-01
Chr06	irgsp1_rep	CDS	22821312	22821529	.	+	0	Parent=Os06t0583900-01
Chr06	irgsp1_rep	CDS	22821612	22822379	.	+	1	Parent=Os06t0583900-01
Chr06	irgsp1_rep	CDS	22822493	22822853	.	+	1	Parent=Os06t0583900-01
Chr06	irgsp1_rep	three_prime_UTR	22822854	22823386	.	+	.	Parent=Os06t0583900-01
Chr06	irgsp1_rep	mRNA	22825043	22826416	.	+	.	ID=Os06t0584000-00;Name=Os06t0584000-00;Locus_id=Os06g0584000;Oryzabase Gene Symbol Synonym(s)=OsPLL10%2C PLL10;Oryzabase Gene Name Synonym(s)=Pectate lyase-like 10;Note=Similar to pectate lyase.;Transcript_evidence=tplb0007g05 (Wheat FLcDNA);ORF_evidence=NP_001150723.1 (RefSeq);InterPro=Pectate lyase/Amb allergen (IPR002022),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),AmbAllergen (IPR018082);Oryzabase=22495;TENOR=Os06t0584000-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	22825043	22825260	.	+	.	Parent=Os06t0584000-00
Chr06	irgsp1_rep	CDS	22825261	22825593	.	+	0	Parent=Os06t0584000-00
Chr06	irgsp1_rep	three_prime_UTR	22825594	22825806	.	+	.	Parent=Os06t0584000-00
Chr06	irgsp1_rep	three_prime_UTR	22825908	22826416	.	+	.	Parent=Os06t0584000-00
Chr06	irgsp1_rep	mRNA	22836894	22839438	.	+	.	ID=Os06t0584200-01;Name=Os06t0584200-01;Locus_id=Os06g0584200;Note=N-6 adenine-specific DNA methylase%2C conserved site domain containing protein.;Transcript_evidence=AK073844 (DDBJ%2C Best hit);ORF_evidence=Q5VP89 (UniProt);NIAS_FLcDNA=J033068L01;Expression=AK073844;TENOR=Os06t0584200-01;KEGG=Os06t0584200-01
Chr06	irgsp1_rep	five_prime_UTR	22836894	22837003	.	+	.	Parent=Os06t0584200-01
Chr06	irgsp1_rep	CDS	22837004	22839022	.	+	0	Parent=Os06t0584200-01
Chr06	irgsp1_rep	three_prime_UTR	22839023	22839438	.	+	.	Parent=Os06t0584200-01
Chr06	irgsp1_rep	mRNA	22836922	22839050	.	+	.	ID=Os06t0584200-02;Name=Os06t0584200-02;Locus_id=Os06g0584200;Note=N-6 adenine-specific DNA methylase%2C conserved site domain containing protein.;Transcript_evidence=AK106549 (DDBJ%2C Best hit);ORF_evidence=Q5VP89 (UniProt);NIAS_FLcDNA=002-108-F11;TENOR=Os06t0584200-02;KEGG=Os06t0584200-02
Chr06	irgsp1_rep	five_prime_UTR	22836922	22837003	.	+	.	Parent=Os06t0584200-02
Chr06	irgsp1_rep	CDS	22837004	22837067	.	+	0	Parent=Os06t0584200-02
Chr06	irgsp1_rep	CDS	22837431	22839022	.	+	2	Parent=Os06t0584200-02
Chr06	irgsp1_rep	three_prime_UTR	22839023	22839050	.	+	.	Parent=Os06t0584200-02
Chr06	irgsp1_rep	mRNA	22836923	22839538	.	+	.	ID=Os06t0584200-03;Name=Os06t0584200-03;Locus_id=Os06g0584200;Note=N-6 adenine-specific DNA methylase%2C conserved site domain containing protein.;Transcript_evidence=AK068592 (DDBJ%2C Best hit);ORF_evidence=A2YEF2 (UniProt);NIAS_FLcDNA=J013154A14;Expression=AK068592;TENOR=Os06t0584200-03;KEGG=Os06t0584200-03
Chr06	irgsp1_rep	five_prime_UTR	22836923	22837003	.	+	.	Parent=Os06t0584200-03
Chr06	irgsp1_rep	CDS	22837004	22839022	.	+	0	Parent=Os06t0584200-03
Chr06	irgsp1_rep	three_prime_UTR	22839023	22839538	.	+	.	Parent=Os06t0584200-03
Chr06	irgsp1_rep	mRNA	22846347	22847044	.	-	.	ID=Os06t0584400-01;Name=Os06t0584400-01;Locus_id=Os06g0584400;Note=Non-protein coding transcript.;Transcript_evidence=AK072622 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023125G21;TENOR=Os06t0584400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	exon	22846347	22847044	.	-	.	Parent=Os06t0584400-01
Chr06	irgsp1_rep	mRNA	22860927	22867521	.	-	.	ID=Os06t0585900-01;Name=Os06t0585900-01;Locus_id=Os06g0585900;Note=Similar to cDNA clone:002-174-F06%2C full insert sequence.;Transcript_evidence=AK121210 (DDBJ%2C Best hit);ORF_evidence=B7F3C2 (UniProt);NIAS_FLcDNA=J023089C08;TENOR=Os06t0585900-01;KEGG=Os06t0585900-01
Chr06	irgsp1_rep	five_prime_UTR	22867455	22867521	.	-	.	Parent=Os06t0585900-01
Chr06	irgsp1_rep	CDS	22867300	22867454	.	-	0	Parent=Os06t0585900-01
Chr06	irgsp1_rep	CDS	22862210	22862240	.	-	1	Parent=Os06t0585900-01
Chr06	irgsp1_rep	CDS	22861246	22861299	.	-	0	Parent=Os06t0585900-01
Chr06	irgsp1_rep	three_prime_UTR	22860927	22861245	.	-	.	Parent=Os06t0585900-01
Chr06	irgsp1_rep	mRNA	22866810	22867518	.	-	.	ID=Os06t0585900-02;Name=Os06t0585900-02;Locus_id=Os06g0585900;Note=Hypothetical protein.;Transcript_evidence=AK111007 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-174-F06;TENOR=Os06t0585900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	22867517	22867518	.	-	.	Parent=Os06t0585900-02
Chr06	irgsp1_rep	CDS	22867300	22867516	.	-	0	Parent=Os06t0585900-02
Chr06	irgsp1_rep	CDS	22867030	22867115	.	-	2	Parent=Os06t0585900-02
Chr06	irgsp1_rep	three_prime_UTR	22866810	22867029	.	-	.	Parent=Os06t0585900-02
Chr06	irgsp1_rep	mRNA	22863057	22866649	.	+	.	ID=Os06t0585950-00;Name=Os06t0585950-00;Locus_id=Os06g0585950;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK368125 (DDBJ);ORF_evidence=B9FTX5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os06t0585950-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	22863057	22866159	.	+	0	Parent=Os06t0585950-00
Chr06	irgsp1_rep	CDS	22866297	22866649	.	+	2	Parent=Os06t0585950-00
Chr06	irgsp1_rep	mRNA	22951386	22955144	.	+	.	ID=Os06t0585982-00;Name=Os06t0585982-00;Locus_id=Os06g0585982;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK368125 (DDBJ);ORF_evidence=Q69KC6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os06t0585982-00
Chr06	irgsp1_rep	five_prime_UTR	22951386	22951395	.	+	.	Parent=Os06t0585982-00
Chr06	irgsp1_rep	CDS	22951396	22954378	.	+	0	Parent=Os06t0585982-00
Chr06	irgsp1_rep	CDS	22954493	22954845	.	+	2	Parent=Os06t0585982-00
Chr06	irgsp1_rep	three_prime_UTR	22954846	22954867	.	+	.	Parent=Os06t0585982-00
Chr06	irgsp1_rep	three_prime_UTR	22955004	22955144	.	+	.	Parent=Os06t0585982-00
Chr06	irgsp1_rep	mRNA	22956669	22957307	.	-	.	ID=Os06t0586000-01;Name=Os06t0586000-01;Locus_id=Os06g0586000;Oryzabase Gene Name Synonym(s)=expressed protein gene;Note=Conserved hypothetical protein.;Transcript_evidence=AK119252 (DDBJ%2C Best hit),AK063903 (DDBJ%2C Best hit);ORF_evidence=A2XQZ9 (UniProt);NIAS_FLcDNA=001-122-H09,001-122-H08;Oryzabase=22133;Expression=AK119252;TENOR=Os06t0586000-01;KEGG=Os06t0586000-01
Chr06	irgsp1_rep	five_prime_UTR	22957269	22957307	.	-	.	Parent=Os06t0586000-01
Chr06	irgsp1_rep	CDS	22957130	22957268	.	-	0	Parent=Os06t0586000-01
Chr06	irgsp1_rep	CDS	22956918	22956988	.	-	2	Parent=Os06t0586000-01
Chr06	irgsp1_rep	three_prime_UTR	22956669	22956917	.	-	.	Parent=Os06t0586000-01
Chr06	irgsp1_rep	mRNA	22958561	22962173	.	+	.	ID=Os06t0586150-00;Name=Os06t0586150-00;Locus_id=Os06g0586150;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK368125 (DDBJ);ORF_evidence=NP_001174873.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os06t0586150-00
Chr06	irgsp1_rep	CDS	22958561	22961594	.	+	0	Parent=Os06t0586150-00
Chr06	irgsp1_rep	CDS	22961701	22962053	.	+	2	Parent=Os06t0586150-00
Chr06	irgsp1_rep	three_prime_UTR	22962054	22962173	.	+	.	Parent=Os06t0586150-00
Chr06	irgsp1_rep	mRNA	22967816	22971851	.	-	.	ID=Os06t0586300-01;Name=Os06t0586300-01;Locus_id=Os06g0586300;Note=Hypothetical protein.;Transcript_evidence=AK119379 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-132-B02;Expression=AK119379;TENOR=Os06t0586300-01;KEGG=Os06t0586300-01
Chr06	irgsp1_rep	five_prime_UTR	22970114	22971851	.	-	.	Parent=Os06t0586300-01
Chr06	irgsp1_rep	CDS	22969640	22970113	.	-	0	Parent=Os06t0586300-01
Chr06	irgsp1_rep	three_prime_UTR	22968344	22969639	.	-	.	Parent=Os06t0586300-01
Chr06	irgsp1_rep	three_prime_UTR	22967816	22968202	.	-	.	Parent=Os06t0586300-01
Chr06	irgsp1_rep	mRNA	22993205	22997134	.	-	.	ID=Os06t0586900-01;Name=Os06t0586900-01;Locus_id=Os06g0586900;Note=Similar to Elicitor-inducible LRR receptor-like protein EILP.;Transcript_evidence=AK121162 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023080G13;Expression=AK121162;TENOR=Os06t0586900-01;KEGG=Os06t0586900-01
Chr06	irgsp1_rep	five_prime_UTR	22993967	22997134	.	-	.	Parent=Os06t0586900-01
Chr06	irgsp1_rep	CDS	22993565	22993966	.	-	0	Parent=Os06t0586900-01
Chr06	irgsp1_rep	three_prime_UTR	22993205	22993564	.	-	.	Parent=Os06t0586900-01
Chr06	irgsp1_rep	mRNA	22992204	22997074	.	-	.	ID=Os06t0586900-02;Name=Os06t0586900-02;Locus_id=Os06g0586900;Note=Similar to Elicitor-inducible LRR receptor-like protein EILP.;Transcript_evidence=AK120396 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013075J05;Expression=AK120396;TENOR=Os06t0586900-02;KEGG=Os06t0586900-02
Chr06	irgsp1_rep	five_prime_UTR	22996923	22997074	.	-	.	Parent=Os06t0586900-02
Chr06	irgsp1_rep	five_prime_UTR	22993967	22994383	.	-	.	Parent=Os06t0586900-02
Chr06	irgsp1_rep	CDS	22993565	22993966	.	-	0	Parent=Os06t0586900-02
Chr06	irgsp1_rep	three_prime_UTR	22992204	22993564	.	-	.	Parent=Os06t0586900-02
Chr06	irgsp1_rep	mRNA	22992411	22995912	.	+	.	ID=Os06t0587000-00;Name=Os06t0587000-00;Locus_id=Os06g0587000;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=AK368125 (DDBJ);ORF_evidence=A2YEG3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);TENOR=Os06t0587000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	22992411	22994315	.	+	0	Parent=Os06t0587000-00
Chr06	irgsp1_rep	three_prime_UTR	22994316	22995440	.	+	.	Parent=Os06t0587000-00
Chr06	irgsp1_rep	three_prime_UTR	22995545	22995912	.	+	.	Parent=Os06t0587000-00
Chr06	irgsp1_rep	mRNA	23000435	23001408	.	-	.	ID=Os06t0587100-00;Name=Os06t0587100-00;Locus_id=Os06g0587100;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001057955.2 (RefSeq);TENOR=Os06t0587100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	23001213	23001408	.	-	0	Parent=Os06t0587100-00
Chr06	irgsp1_rep	CDS	23000627	23000704	.	-	2	Parent=Os06t0587100-00
Chr06	irgsp1_rep	CDS	23000435	23000511	.	-	2	Parent=Os06t0587100-00
Chr06	irgsp1_rep	mRNA	23005337	23008846	.	+	.	ID=Os06t0587200-00;Name=Os06t0587200-00;Locus_id=Os06g0587200;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK368125 (DDBJ);ORF_evidence=B9FTY2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os06t0587200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	23005337	23005340	.	+	.	Parent=Os06t0587200-00
Chr06	irgsp1_rep	CDS	23005341	23008371	.	+	0	Parent=Os06t0587200-00
Chr06	irgsp1_rep	CDS	23008479	23008828	.	+	2	Parent=Os06t0587200-00
Chr06	irgsp1_rep	three_prime_UTR	23008829	23008846	.	+	.	Parent=Os06t0587200-00
Chr06	irgsp1_rep	mRNA	23017969	23021462	.	-	.	ID=Os06t0587300-01;Name=Os06t0587300-01;Locus_id=Os06g0587300;Note=Hypothetical protein.;Transcript_evidence=AK069419 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023019B04;Expression=AK069419;TENOR=Os06t0587300-01;KEGG=Os06t0587300-01
Chr06	irgsp1_rep	five_prime_UTR	23021409	23021462	.	-	.	Parent=Os06t0587300-01
Chr06	irgsp1_rep	CDS	23021237	23021408	.	-	0	Parent=Os06t0587300-01
Chr06	irgsp1_rep	CDS	23020070	23020164	.	-	2	Parent=Os06t0587300-01
Chr06	irgsp1_rep	three_prime_UTR	23017969	23020069	.	-	.	Parent=Os06t0587300-01
Chr06	irgsp1_rep	mRNA	23049660	23052133	.	-	.	ID=Os06t0587900-00;Name=Os06t0587900-00;Locus_id=Os06g0587900;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001174877.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591);TENOR=Os06t0587900-00;KEGG=Os06t0587900-00
Chr06	irgsp1_rep	CDS	23050060	23052133	.	-	0	Parent=Os06t0587900-00
Chr06	irgsp1_rep	CDS	23049660	23049877	.	-	2	Parent=Os06t0587900-00
Chr06	irgsp1_rep	mRNA	23087423	23098189	.	-	.	ID=Os06t0588450-00;Name=Os06t0588450-00;Locus_id=Os06g0588450;Note=Hypothetical conserved gene.;Transcript_evidence=CT836296 (DDBJ%2C Best hit);ORF_evidence=Q69LV8 (UniProt);TENOR=Os06t0588450-00;KEGG=Os06t0588450-00
Chr06	irgsp1_rep	five_prime_UTR	23097946	23098189	.	-	.	Parent=Os06t0588450-00
Chr06	irgsp1_rep	five_prime_UTR	23087775	23087795	.	-	.	Parent=Os06t0588450-00
Chr06	irgsp1_rep	CDS	23087628	23087774	.	-	0	Parent=Os06t0588450-00
Chr06	irgsp1_rep	three_prime_UTR	23087423	23087627	.	-	.	Parent=Os06t0588450-00
Chr06	irgsp1_rep	mRNA	23093973	23097578	.	+	.	ID=Os06t0588800-00;Name=Os06t0588800-00;Locus_id=Os06g0588800;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK368125 (DDBJ);ORF_evidence=Q69KA0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os06t0588800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	23093973	23097078	.	+	0	Parent=Os06t0588800-00
Chr06	irgsp1_rep	CDS	23097172	23097524	.	+	2	Parent=Os06t0588800-00
Chr06	irgsp1_rep	three_prime_UTR	23097525	23097578	.	+	.	Parent=Os06t0588800-00
Chr06	irgsp1_rep	mRNA	23099028	23102007	.	-	.	ID=Os06t0588900-01;Name=Os06t0588900-01;Locus_id=Os06g0588900;Note=CT11-RanBPM domain containing protein.;Transcript_evidence=AK071741 (DDBJ%2C Best hit);ORF_evidence=B6TBA9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=LisH dimerisation motif (IPR006594),CTLH%2C C-terminal LisH motif (IPR006595),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Ran binding protein-like%2C CRA domain (IPR013144),Ran binding protein%2C CRA domain (IPR019589);NIAS_FLcDNA=J023110B12;Expression=AK071741;TENOR=Os06t0588900-01;KEGG=Os06t0588900-01
Chr06	irgsp1_rep	five_prime_UTR	23101808	23102007	.	-	.	Parent=Os06t0588900-01
Chr06	irgsp1_rep	five_prime_UTR	23100374	23100428	.	-	.	Parent=Os06t0588900-01
Chr06	irgsp1_rep	CDS	23099213	23100373	.	-	0	Parent=Os06t0588900-01
Chr06	irgsp1_rep	three_prime_UTR	23099028	23099212	.	-	.	Parent=Os06t0588900-01
Chr06	irgsp1_rep	mRNA	23105298	23113054	.	-	.	ID=Os06t0589300-01;Name=Os06t0589300-01;Locus_id=Os06g0589300;CGSNL Gene Symbol=ABCA2;CGSNL Gene Name=ABC TRANSPORTER A FAMILY MEMBER 2;Oryzabase Gene Symbol Synonym(s)=OsABCA2%2C OsISC27;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCA subgroup member 2%2C Iron-sulfur cluster protein 27;Note=ABC transporter-like domain containing protein.;Transcript_evidence=AK098963 (DDBJ%2C Best hit),AK065426 (DDBJ%2C Best hit);ORF_evidence=NP_190362.2 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=J013072F03,J013005O19;Oryzabase=11947;Expression=AK098963;TENOR=Os06t0589300-01;KEGG=Os06t0589300-01
Chr06	irgsp1_rep	five_prime_UTR	23112992	23113054	.	-	.	Parent=Os06t0589300-01
Chr06	irgsp1_rep	CDS	23112905	23112991	.	-	0	Parent=Os06t0589300-01
Chr06	irgsp1_rep	CDS	23111898	23112276	.	-	0	Parent=Os06t0589300-01
Chr06	irgsp1_rep	CDS	23111572	23111648	.	-	2	Parent=Os06t0589300-01
Chr06	irgsp1_rep	CDS	23111335	23111479	.	-	0	Parent=Os06t0589300-01
Chr06	irgsp1_rep	CDS	23110951	23111070	.	-	2	Parent=Os06t0589300-01
Chr06	irgsp1_rep	CDS	23110727	23110854	.	-	2	Parent=Os06t0589300-01
Chr06	irgsp1_rep	CDS	23109958	23110116	.	-	0	Parent=Os06t0589300-01
Chr06	irgsp1_rep	CDS	23109579	23109741	.	-	0	Parent=Os06t0589300-01
Chr06	irgsp1_rep	CDS	23109371	23109496	.	-	2	Parent=Os06t0589300-01
Chr06	irgsp1_rep	CDS	23109192	23109275	.	-	2	Parent=Os06t0589300-01
Chr06	irgsp1_rep	CDS	23108613	23108974	.	-	2	Parent=Os06t0589300-01
Chr06	irgsp1_rep	CDS	23108004	23108204	.	-	0	Parent=Os06t0589300-01
Chr06	irgsp1_rep	CDS	23107574	23107683	.	-	0	Parent=Os06t0589300-01
Chr06	irgsp1_rep	CDS	23107383	23107467	.	-	1	Parent=Os06t0589300-01
Chr06	irgsp1_rep	CDS	23106758	23106886	.	-	0	Parent=Os06t0589300-01
Chr06	irgsp1_rep	CDS	23106558	23106663	.	-	0	Parent=Os06t0589300-01
Chr06	irgsp1_rep	CDS	23106345	23106433	.	-	2	Parent=Os06t0589300-01
Chr06	irgsp1_rep	CDS	23105557	23105856	.	-	0	Parent=Os06t0589300-01
Chr06	irgsp1_rep	three_prime_UTR	23105298	23105556	.	-	.	Parent=Os06t0589300-01
Chr06	irgsp1_rep	mRNA	23119059	23122162	.	+	.	ID=Os06t0589500-01;Name=Os06t0589500-01;Locus_id=Os06g0589500;Note=Conserved hypothetical protein.;Transcript_evidence=AK073322 (DDBJ%2C Best hit);ORF_evidence=A2YEJ1 (UniProt);NIAS_FLcDNA=J033030G15;Expression=AK073322;TENOR=Os06t0589500-01;KEGG=Os06t0589500-01
Chr06	irgsp1_rep	five_prime_UTR	23119059	23119192	.	+	.	Parent=Os06t0589500-01
Chr06	irgsp1_rep	CDS	23119193	23119223	.	+	0	Parent=Os06t0589500-01
Chr06	irgsp1_rep	CDS	23119327	23119429	.	+	2	Parent=Os06t0589500-01
Chr06	irgsp1_rep	CDS	23120719	23121091	.	+	1	Parent=Os06t0589500-01
Chr06	irgsp1_rep	CDS	23121172	23121613	.	+	0	Parent=Os06t0589500-01
Chr06	irgsp1_rep	CDS	23121726	23121769	.	+	2	Parent=Os06t0589500-01
Chr06	irgsp1_rep	CDS	23121873	23121920	.	+	0	Parent=Os06t0589500-01
Chr06	irgsp1_rep	three_prime_UTR	23121921	23122162	.	+	.	Parent=Os06t0589500-01
Chr06	irgsp1_rep	mRNA	23134854	23136224	.	+	.	ID=Os06t0589600-01;Name=Os06t0589600-01;Locus_id=Os06g0589600;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK111758 (DDBJ%2C Best hit);ORF_evidence=B6SWI4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Tyrosine-protein kinase%2C active site (IPR008266),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023058G03;Expression=AK111758;TENOR=Os06t0589600-01;KEGG=Os06t0589600-01
Chr06	irgsp1_rep	five_prime_UTR	23134854	23134855	.	+	.	Parent=Os06t0589600-01
Chr06	irgsp1_rep	CDS	23134856	23134889	.	+	0	Parent=Os06t0589600-01
Chr06	irgsp1_rep	CDS	23134981	23135189	.	+	2	Parent=Os06t0589600-01
Chr06	irgsp1_rep	CDS	23135271	23135320	.	+	0	Parent=Os06t0589600-01
Chr06	irgsp1_rep	CDS	23135513	23135633	.	+	1	Parent=Os06t0589600-01
Chr06	irgsp1_rep	CDS	23135718	23135963	.	+	0	Parent=Os06t0589600-01
Chr06	irgsp1_rep	three_prime_UTR	23135964	23136224	.	+	.	Parent=Os06t0589600-01
Chr06	irgsp1_rep	mRNA	23136424	23139448	.	-	.	ID=Os06t0589700-01;Name=Os06t0589700-01;Locus_id=Os06g0589700;Note=Similar to Poly(A)-binding protein (Fragment).;Transcript_evidence=AK064233 (DDBJ%2C Best hit);ORF_evidence=B9FTY9 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723);InterPro=RNA recognition motif domain (IPR000504),Polyadenylate-binding protein/Hyperplastic disc protein (IPR002004),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=002-104-H08;Expression=AK064233;TENOR=Os06t0589700-01;KEGG=Os06t0589700-01
Chr06	irgsp1_rep	five_prime_UTR	23139448	23139448	.	-	.	Parent=Os06t0589700-01
Chr06	irgsp1_rep	CDS	23139142	23139447	.	-	0	Parent=Os06t0589700-01
Chr06	irgsp1_rep	CDS	23138959	23139036	.	-	0	Parent=Os06t0589700-01
Chr06	irgsp1_rep	CDS	23138766	23138855	.	-	0	Parent=Os06t0589700-01
Chr06	irgsp1_rep	CDS	23138292	23138540	.	-	0	Parent=Os06t0589700-01
Chr06	irgsp1_rep	CDS	23137639	23137857	.	-	0	Parent=Os06t0589700-01
Chr06	irgsp1_rep	CDS	23136672	23136929	.	-	0	Parent=Os06t0589700-01
Chr06	irgsp1_rep	three_prime_UTR	23136424	23136671	.	-	.	Parent=Os06t0589700-01
Chr06	irgsp1_rep	mRNA	23138775	23140895	.	+	.	ID=Os06t0589750-00;Name=Os06t0589750-00;Locus_id=Os06g0589750;Note=Hypothetical protein.;Transcript_evidence=tplb0035f12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0589750-00
Chr06	irgsp1_rep	five_prime_UTR	23138775	23138920	.	+	.	Parent=Os06t0589750-00
Chr06	irgsp1_rep	five_prime_UTR	23139135	23139346	.	+	.	Parent=Os06t0589750-00
Chr06	irgsp1_rep	CDS	23139347	23139691	.	+	0	Parent=Os06t0589750-00
Chr06	irgsp1_rep	three_prime_UTR	23139692	23139913	.	+	.	Parent=Os06t0589750-00
Chr06	irgsp1_rep	three_prime_UTR	23140610	23140895	.	+	.	Parent=Os06t0589750-00
Chr06	irgsp1_rep	mRNA	23144729	23148845	.	-	.	ID=Os06t0589800-01;Name=Os06t0589800-01;Locus_id=Os06g0589800;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK101039 (DDBJ%2C Best hit);ORF_evidence=C6ZRZ9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033000K11;Expression=AK101039;TENOR=Os06t0589800-01;KEGG=Os06t0589800-01
Chr06	irgsp1_rep	five_prime_UTR	23148607	23148845	.	-	.	Parent=Os06t0589800-01
Chr06	irgsp1_rep	CDS	23145774	23148606	.	-	0	Parent=Os06t0589800-01
Chr06	irgsp1_rep	CDS	23144955	23145340	.	-	2	Parent=Os06t0589800-01
Chr06	irgsp1_rep	three_prime_UTR	23144729	23144954	.	-	.	Parent=Os06t0589800-01
Chr06	irgsp1_rep	mRNA	23144857	23145423	.	+	.	ID=Os06t0589900-01;Name=Os06t0589900-01;Locus_id=Os06g0589900;Note=Hypothetical protein.;Transcript_evidence=AK062501 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-104-A11;TENOR=Os06t0589900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	23144857	23144936	.	+	.	Parent=Os06t0589900-01
Chr06	irgsp1_rep	CDS	23144937	23145344	.	+	0	Parent=Os06t0589900-01
Chr06	irgsp1_rep	three_prime_UTR	23145345	23145423	.	+	.	Parent=Os06t0589900-01
Chr06	irgsp1_rep	mRNA	23147360	23148493	.	+	.	ID=Os06t0589950-00;Name=Os06t0589950-00;Locus_id=Os06g0589950;Note=Hypothetical protein.;Transcript_evidence=BT085651 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0589950-00
Chr06	irgsp1_rep	five_prime_UTR	23147360	23147361	.	+	.	Parent=Os06t0589950-00
Chr06	irgsp1_rep	CDS	23147362	23147712	.	+	0	Parent=Os06t0589950-00
Chr06	irgsp1_rep	CDS	23147782	23148493	.	+	0	Parent=Os06t0589950-00
Chr06	irgsp1_rep	mRNA	23181263	23184271	.	+	.	ID=Os06t0590301-01;Name=Os06t0590301-01;Locus_id=Os06g0590301;Note=Similar to short-chain dehydrogenase/reductase (SDR) family protein.;Transcript_evidence=AK241239 (DDBJ%2C Best hit);ORF_evidence=NP_192713.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J065128I21;TENOR=Os06t0590301-01;KEGG=Os06t0590301-01
Chr06	irgsp1_rep	five_prime_UTR	23181263	23181371	.	+	.	Parent=Os06t0590301-01
Chr06	irgsp1_rep	CDS	23181372	23181386	.	+	0	Parent=Os06t0590301-01
Chr06	irgsp1_rep	CDS	23181508	23181569	.	+	0	Parent=Os06t0590301-01
Chr06	irgsp1_rep	CDS	23182049	23182168	.	+	1	Parent=Os06t0590301-01
Chr06	irgsp1_rep	CDS	23182252	23182351	.	+	1	Parent=Os06t0590301-01
Chr06	irgsp1_rep	CDS	23182471	23182551	.	+	0	Parent=Os06t0590301-01
Chr06	irgsp1_rep	CDS	23182711	23182760	.	+	0	Parent=Os06t0590301-01
Chr06	irgsp1_rep	CDS	23182882	23183032	.	+	1	Parent=Os06t0590301-01
Chr06	irgsp1_rep	CDS	23183607	23183663	.	+	0	Parent=Os06t0590301-01
Chr06	irgsp1_rep	CDS	23183751	23183872	.	+	0	Parent=Os06t0590301-01
Chr06	irgsp1_rep	CDS	23183977	23184181	.	+	1	Parent=Os06t0590301-01
Chr06	irgsp1_rep	three_prime_UTR	23184182	23184271	.	+	.	Parent=Os06t0590301-01
Chr06	irgsp1_rep	mRNA	23185057	23186281	.	+	.	ID=Os06t0590500-01;Name=Os06t0590500-01;Locus_id=Os06g0590500;CGSNL Gene Symbol=SYP124;CGSNL Gene Name=SYNTAXIN OF PLANTS 124;Oryzabase Gene Symbol Synonym(s)=OsSYP124;Oryzabase Gene Name Synonym(s)=Syntaxin of Plants124;Note=Similar to Syntaxin 121 (AtSYP121) (Syntaxin-related protein At-Syr1).;Transcript_evidence=AK107080 (DDBJ%2C Best hit);ORF_evidence=Q69HV9 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: membrane (GO:0016020),Molecular Function: SNAP receptor activity (GO:0005484),Molecular Function: protein binding (GO:0005515);InterPro=Target SNARE coiled-coil domain (IPR000727),Syntaxin%2C N-terminal (IPR006011),Syntaxin/epimorphin%2C conserved site (IPR006012),t-SNARE (IPR010989);NIAS_FLcDNA=002-121-F10;Oryzabase=23010;Expression=AK107080;TENOR=Os06t0590500-01;KEGG=Os06t0590500-01
Chr06	irgsp1_rep	five_prime_UTR	23185057	23185155	.	+	.	Parent=Os06t0590500-01
Chr06	irgsp1_rep	CDS	23185156	23185596	.	+	0	Parent=Os06t0590500-01
Chr06	irgsp1_rep	CDS	23185691	23186176	.	+	0	Parent=Os06t0590500-01
Chr06	irgsp1_rep	three_prime_UTR	23186177	23186281	.	+	.	Parent=Os06t0590500-01
Chr06	irgsp1_rep	mRNA	23185188	23186155	.	-	.	ID=Os06t0590550-00;Name=Os06t0590550-00;Locus_id=Os06g0590550;Note=Hypothetical protein.;Transcript_evidence=BT018467 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0590550-00
Chr06	irgsp1_rep	CDS	23185702	23186155	.	-	0	Parent=Os06t0590550-00
Chr06	irgsp1_rep	CDS	23185604	23185608	.	-	2	Parent=Os06t0590550-00
Chr06	irgsp1_rep	three_prime_UTR	23185188	23185603	.	-	.	Parent=Os06t0590550-00
Chr06	irgsp1_rep	mRNA	23187194	23188967	.	-	.	ID=Os06t0590600-01;Name=Os06t0590600-01;Locus_id=Os06g0590600;Note=Similar to Beta-1%2C3-glucanase-like protein.;Transcript_evidence=AK101025 (DDBJ%2C Best hit);ORF_evidence=NP_001152213.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J023150D21;Expression=AK101025;TENOR=Os06t0590600-01;KEGG=Os06t0590600-01
Chr06	irgsp1_rep	five_prime_UTR	23188892	23188967	.	-	.	Parent=Os06t0590600-01
Chr06	irgsp1_rep	CDS	23188539	23188891	.	-	0	Parent=Os06t0590600-01
Chr06	irgsp1_rep	CDS	23187349	23188447	.	-	1	Parent=Os06t0590600-01
Chr06	irgsp1_rep	three_prime_UTR	23187194	23187348	.	-	.	Parent=Os06t0590600-01
Chr06	irgsp1_rep	mRNA	23196356	23198035	.	+	.	ID=Os06t0590700-01;Name=Os06t0590700-01;Locus_id=Os06g0590700;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK287492 (DDBJ%2C Best hit);ORF_evidence=NP_001057969.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J043031H22;TENOR=Os06t0590700-01;KEGG=Os06t0590700-01
Chr06	irgsp1_rep	five_prime_UTR	23196356	23196389	.	+	.	Parent=Os06t0590700-01
Chr06	irgsp1_rep	CDS	23196390	23197847	.	+	0	Parent=Os06t0590700-01
Chr06	irgsp1_rep	three_prime_UTR	23197848	23198035	.	+	.	Parent=Os06t0590700-01
Chr06	irgsp1_rep	mRNA	23204548	23206070	.	-	.	ID=Os06t0590800-00;Name=Os06t0590800-00;Locus_id=Os06g0590800;Note=Hypothetical conserved gene.;Transcript_evidence=AK375409 (DDBJ);ORF_evidence=Q69X81 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os06t0590800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	23206054	23206070	.	-	.	Parent=Os06t0590800-00
Chr06	irgsp1_rep	CDS	23204560	23206053	.	-	0	Parent=Os06t0590800-00
Chr06	irgsp1_rep	three_prime_UTR	23204548	23204559	.	-	.	Parent=Os06t0590800-00
Chr06	irgsp1_rep	mRNA	23216501	23216725	.	-	.	ID=Os06t0591050-00;Name=Os06t0591050-00;Locus_id=Os06g0591050;Note=Non-protein coding transcript.;Transcript_evidence=CT828918 (DDBJ%2C Secondary hit);ORF_evidence=NONE;TENOR=Os06t0591050-00
Chr06	irgsp1_rep	exon	23216501	23216725	.	-	.	Parent=Os06t0591050-00
Chr06	irgsp1_rep	mRNA	23227138	23228388	.	+	.	ID=Os06t0591200-01;Name=Os06t0591200-01;Locus_id=Os06g0591200;Note=Conserved hypothetical protein.;Transcript_evidence=AK062563 (DDBJ%2C Best hit),AK120112 (DDBJ%2C Best hit);ORF_evidence=A2YEK7 (UniProt);NIAS_FLcDNA=001-045-E12,J013025D20;TENOR=Os06t0591200-01
Chr06	irgsp1_rep	five_prime_UTR	23227138	23227193	.	+	.	Parent=Os06t0591200-01
Chr06	irgsp1_rep	CDS	23227194	23227299	.	+	0	Parent=Os06t0591200-01
Chr06	irgsp1_rep	CDS	23227714	23227988	.	+	2	Parent=Os06t0591200-01
Chr06	irgsp1_rep	three_prime_UTR	23227989	23228388	.	+	.	Parent=Os06t0591200-01
Chr06	irgsp1_rep	mRNA	23232535	23233439	.	+	.	ID=Os06t0591400-01;Name=Os06t0591400-01;Locus_id=Os06g0591400;Note=Conserved hypothetical protein.;Transcript_evidence=AK061129 (DDBJ%2C Best hit);ORF_evidence=A2YEK9 (UniProt);NIAS_FLcDNA=006-207-H06;Expression=AK061129;TENOR=Os06t0591400-01;KEGG=Os06t0591400-01
Chr06	irgsp1_rep	five_prime_UTR	23232535	23232643	.	+	.	Parent=Os06t0591400-01
Chr06	irgsp1_rep	CDS	23232644	23232749	.	+	0	Parent=Os06t0591400-01
Chr06	irgsp1_rep	CDS	23232881	23233116	.	+	2	Parent=Os06t0591400-01
Chr06	irgsp1_rep	three_prime_UTR	23233117	23233439	.	+	.	Parent=Os06t0591400-01
Chr06	irgsp1_rep	mRNA	23234119	23234772	.	+	.	ID=Os06t0591450-00;Name=Os06t0591450-00;Locus_id=Os06g0591450;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001174879.1 (RefSeq);TENOR=Os06t0591450-00
Chr06	irgsp1_rep	CDS	23234119	23234772	.	+	0	Parent=Os06t0591450-00
Chr06	irgsp1_rep	mRNA	23240367	23240597	.	-	.	ID=Os06t0591551-00;Name=Os06t0591551-00;Locus_id=Os06g0591551;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os06t0591551-00;KEGG=Os06t0591551-00
Chr06	irgsp1_rep	CDS	23240367	23240597	.	-	0	Parent=Os06t0591551-00
Chr06	irgsp1_rep	mRNA	23241327	23243257	.	-	.	ID=Os06t0591600-01;Name=Os06t0591600-01;Locus_id=Os06g0591600;Note=Similar to Hemoglobin Hb2.;Transcript_evidence=AK073898 (DDBJ%2C Best hit);ORF_evidence=B6SXE2 (UniProt);GO=Biological Process: oxygen transport (GO:0015671),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxygen binding (GO:0019825),Molecular Function: heme binding (GO:0020037);InterPro=Globin%2C truncated bacterial-like (IPR001486),Globin-like (IPR009050),Globin%2C structural domain (IPR012292);NIAS_FLcDNA=J033075H07;Expression=AK073898;TENOR=Os06t0591600-01;KEGG=Os06t0591600-01
Chr06	irgsp1_rep	five_prime_UTR	23243155	23243257	.	-	.	Parent=Os06t0591600-01
Chr06	irgsp1_rep	CDS	23243012	23243154	.	-	0	Parent=Os06t0591600-01
Chr06	irgsp1_rep	CDS	23242791	23242921	.	-	1	Parent=Os06t0591600-01
Chr06	irgsp1_rep	CDS	23241756	23241900	.	-	2	Parent=Os06t0591600-01
Chr06	irgsp1_rep	CDS	23241582	23241681	.	-	1	Parent=Os06t0591600-01
Chr06	irgsp1_rep	three_prime_UTR	23241327	23241581	.	-	.	Parent=Os06t0591600-01
Chr06	irgsp1_rep	mRNA	23291301	23292109	.	-	.	ID=Os06t0592200-00;Name=Os06t0592200-00;Locus_id=Os06g0592200;Note=Hypothetical protein.;Transcript_evidence=EU970913 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0592200-00
Chr06	irgsp1_rep	five_prime_UTR	23292089	23292109	.	-	.	Parent=Os06t0592200-00
Chr06	irgsp1_rep	CDS	23291836	23292088	.	-	0	Parent=Os06t0592200-00
Chr06	irgsp1_rep	CDS	23291695	23291747	.	-	2	Parent=Os06t0592200-00
Chr06	irgsp1_rep	three_prime_UTR	23291301	23291694	.	-	.	Parent=Os06t0592200-00
Chr06	irgsp1_rep	mRNA	23291753	23292254	.	+	.	ID=Os06t0592400-01;Name=Os06t0592400-01;Locus_id=Os06g0592400;CGSNL Gene Symbol=ALDH2B2;CGSNL Gene Name=ALDEHYDE DEHYDROGENASE 2B2;Oryzabase Gene Symbol Synonym(s)=OsALDH2B2;Oryzabase Gene Name Synonym(s)=aldehyde dehydrogenase%2C Aldehyde dehydrogenase 2B2;Note=Similar to Cytosolic aldehyde dehydrogenase RF2C.;Transcript_evidence=AK062788 (DDBJ%2C Best hit);ORF_evidence=NP_001105046.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620);InterPro=Aldehyde dehydrogenase domain (IPR015590),Aldehyde/histidinol dehydrogenase (IPR016161),Aldehyde dehydrogenase%2C C-terminal (IPR016163);NIAS_FLcDNA=001-107-B11;Oryzabase=20166;Expression=AK062788;TENOR=Os06t0592400-01;KEGG=Os06t0592400-01 (EC:1.2.1.3)
Chr06	irgsp1_rep	five_prime_UTR	23291753	23291791	.	+	.	Parent=Os06t0592400-01
Chr06	irgsp1_rep	CDS	23291792	23292106	.	+	0	Parent=Os06t0592400-01
Chr06	irgsp1_rep	three_prime_UTR	23292107	23292254	.	+	.	Parent=Os06t0592400-01
Chr06	irgsp1_rep	mRNA	23293383	23294073	.	-	.	ID=Os06t0592500-01;Name=Os06t0592500-01;Locus_id=Os06g0592500;Note=Similar to Ethylene-responsive transcriptional coactivator.;Transcript_evidence=AK122052 (DDBJ%2C Best hit),AK119729 (DDBJ%2C Best hit);ORF_evidence=C8C4P8 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Helix-turn-helix type 3 (IPR001387),Lambda repressor-like%2C DNA-binding (IPR010982),Multiprotein bridging factor 1%2C N-terminal (IPR013729);NIAS_FLcDNA=J033114G13,002-157-H08;Expression=AK122052;TENOR=Os06t0592500-01;KEGG=Os06t0592500-01
Chr06	irgsp1_rep	five_prime_UTR	23294015	23294073	.	-	.	Parent=Os06t0592500-01
Chr06	irgsp1_rep	CDS	23293547	23294014	.	-	0	Parent=Os06t0592500-01
Chr06	irgsp1_rep	three_prime_UTR	23293383	23293546	.	-	.	Parent=Os06t0592500-01
Chr06	irgsp1_rep	mRNA	23303679	23304125	.	-	.	ID=Os06t0592950-00;Name=Os06t0592950-00;Locus_id=Os06g0592950;Note=Hypothetical gene.;Transcript_evidence=EU948664 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0592950-00
Chr06	irgsp1_rep	five_prime_UTR	23304119	23304125	.	-	.	Parent=Os06t0592950-00
Chr06	irgsp1_rep	CDS	23303679	23304118	.	-	0	Parent=Os06t0592950-00
Chr06	irgsp1_rep	mRNA	23298136	23299239	.	-	.	ID=Os06t0592951-00;Name=Os06t0592951-00;Locus_id=Os06g0592951;Note=Conserved hypothetical protein.;Transcript_evidence=BT036163 (DDBJ);ORF_evidence=Q94H90 (UniProt);TENOR=Os06t0592951-00
Chr06	irgsp1_rep	five_prime_UTR	23299195	23299239	.	-	.	Parent=Os06t0592951-00
Chr06	irgsp1_rep	CDS	23299032	23299194	.	-	0	Parent=Os06t0592951-00
Chr06	irgsp1_rep	CDS	23298554	23298795	.	-	2	Parent=Os06t0592951-00
Chr06	irgsp1_rep	three_prime_UTR	23298136	23298553	.	-	.	Parent=Os06t0592951-00
Chr06	irgsp1_rep	mRNA	23303671	23306966	.	+	.	ID=Os06t0593100-01;Name=Os06t0593100-01;Locus_id=Os06g0593100;Note=Similar to UDP-galactose/UDP-glucose transporter.;Transcript_evidence=AK060274 (DDBJ%2C Best hit),AK071175 (DDBJ%2C Best hit);ORF_evidence=B6TKZ4 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085);InterPro=UAA transporter (IPR013657);NIAS_FLcDNA=001-005-G07,J023084M11;TENOR=Os06t0593100-01
Chr06	irgsp1_rep	five_prime_UTR	23303671	23303723	.	+	.	Parent=Os06t0593100-01
Chr06	irgsp1_rep	CDS	23303724	23303884	.	+	0	Parent=Os06t0593100-01
Chr06	irgsp1_rep	CDS	23304023	23304120	.	+	1	Parent=Os06t0593100-01
Chr06	irgsp1_rep	CDS	23304250	23304389	.	+	2	Parent=Os06t0593100-01
Chr06	irgsp1_rep	CDS	23305189	23305219	.	+	0	Parent=Os06t0593100-01
Chr06	irgsp1_rep	CDS	23305618	23305721	.	+	2	Parent=Os06t0593100-01
Chr06	irgsp1_rep	CDS	23306032	23306153	.	+	0	Parent=Os06t0593100-01
Chr06	irgsp1_rep	CDS	23306244	23306664	.	+	1	Parent=Os06t0593100-01
Chr06	irgsp1_rep	three_prime_UTR	23306665	23306966	.	+	.	Parent=Os06t0593100-01
Chr06	irgsp1_rep	mRNA	23310215	23311945	.	+	.	ID=Os06t0593200-01;Name=Os06t0593200-01;Locus_id=Os06g0593200;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK060513 (DDBJ%2C Best hit);ORF_evidence=B9FU00 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=001-019-F01;Expression=AK060513;TENOR=Os06t0593200-01;KEGG=Os06t0593200-01
Chr06	irgsp1_rep	five_prime_UTR	23310215	23310244	.	+	.	Parent=Os06t0593200-01
Chr06	irgsp1_rep	CDS	23310245	23311726	.	+	0	Parent=Os06t0593200-01
Chr06	irgsp1_rep	three_prime_UTR	23311727	23311945	.	+	.	Parent=Os06t0593200-01
Chr06	irgsp1_rep	mRNA	23333368	23335030	.	-	.	ID=Os06t0593800-01;Name=Os06t0593800-01;Locus_id=Os06g0593800;Oryzabase Gene Name Synonym(s)=chloroplastic crocetin glucosyltransferase;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK062590 (DDBJ%2C Best hit);ORF_evidence=B9FU01 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=001-100-G10;Oryzabase=23278;Expression=AK062590;TENOR=Os06t0593800-01;KEGG=Os06t0593800-01
Chr06	irgsp1_rep	five_prime_UTR	23334945	23335030	.	-	.	Parent=Os06t0593800-01
Chr06	irgsp1_rep	CDS	23333535	23334944	.	-	0	Parent=Os06t0593800-01
Chr06	irgsp1_rep	three_prime_UTR	23333368	23333534	.	-	.	Parent=Os06t0593800-01
Chr06	irgsp1_rep	mRNA	23343928	23350815	.	+	.	ID=Os06t0594100-01;Name=Os06t0594100-01;Locus_id=Os06g0594100;CGSNL Gene Symbol=CRO;CGSNL Gene Name=CROTONASE;Oryzabase Gene Symbol Synonym(s)=OsCRO;Oryzabase Gene Name Synonym(s)=crotonase;Note=Crotonase%2C core domain containing protein.;Transcript_evidence=AK072650 (DDBJ%2C Best hit);ORF_evidence=XP_002885642.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Crotonase%2C core (IPR001753);NIAS_FLcDNA=J023125B09;Oryzabase=22344;Expression=AK072650;TENOR=Os06t0594100-01;KEGG=Os06t0594100-01 (EC:4.2.1.17)
Chr06	irgsp1_rep	five_prime_UTR	23343928	23343944	.	+	.	Parent=Os06t0594100-01
Chr06	irgsp1_rep	CDS	23343945	23344212	.	+	0	Parent=Os06t0594100-01
Chr06	irgsp1_rep	CDS	23344995	23345096	.	+	2	Parent=Os06t0594100-01
Chr06	irgsp1_rep	CDS	23345221	23345285	.	+	2	Parent=Os06t0594100-01
Chr06	irgsp1_rep	CDS	23346883	23347015	.	+	0	Parent=Os06t0594100-01
Chr06	irgsp1_rep	CDS	23347123	23347221	.	+	2	Parent=Os06t0594100-01
Chr06	irgsp1_rep	CDS	23348197	23348326	.	+	2	Parent=Os06t0594100-01
Chr06	irgsp1_rep	CDS	23348725	23348903	.	+	1	Parent=Os06t0594100-01
Chr06	irgsp1_rep	CDS	23349049	23349176	.	+	2	Parent=Os06t0594100-01
Chr06	irgsp1_rep	CDS	23349291	23349390	.	+	0	Parent=Os06t0594100-01
Chr06	irgsp1_rep	CDS	23350575	23350675	.	+	2	Parent=Os06t0594100-01
Chr06	irgsp1_rep	three_prime_UTR	23350676	23350815	.	+	.	Parent=Os06t0594100-01
Chr06	irgsp1_rep	mRNA	23343988	23350323	.	+	.	ID=Os06t0594100-02;Name=Os06t0594100-02;Locus_id=Os06g0594100;CGSNL Gene Symbol=CRO;CGSNL Gene Name=CROTONASE;Oryzabase Gene Symbol Synonym(s)=OsCRO;Oryzabase Gene Name Synonym(s)=crotonase;Note=Similar to predicted protein.;Transcript_evidence=AK120136 (DDBJ%2C Best hit);ORF_evidence=B8B475 (UniProt);NIAS_FLcDNA=J013027G24;Oryzabase=22344;Expression=AK120136;TENOR=Os06t0594100-02;KEGG=Os06t0594100-02 (EC:4.2.1.17)
Chr06	irgsp1_rep	five_prime_UTR	23343988	23344106	.	+	.	Parent=Os06t0594100-02
Chr06	irgsp1_rep	CDS	23344107	23344370	.	+	0	Parent=Os06t0594100-02
Chr06	irgsp1_rep	three_prime_UTR	23344371	23347015	.	+	.	Parent=Os06t0594100-02
Chr06	irgsp1_rep	three_prime_UTR	23347123	23350323	.	+	.	Parent=Os06t0594100-02
Chr06	irgsp1_rep	mRNA	23357768	23360733	.	-	.	ID=Os06t0594200-01;Name=Os06t0594200-01;Locus_id=Os06g0594200;Note=Disease resistance protein domain containing protein.;Transcript_evidence=AK287541 (DDBJ%2C Best hit);ORF_evidence=B8AUT1 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J065011M11;TENOR=Os06t0594200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	23359986	23360733	.	-	.	Parent=Os06t0594200-01
Chr06	irgsp1_rep	five_prime_UTR	23358853	23359176	.	-	.	Parent=Os06t0594200-01
Chr06	irgsp1_rep	CDS	23358211	23358852	.	-	0	Parent=Os06t0594200-01
Chr06	irgsp1_rep	three_prime_UTR	23357768	23358210	.	-	.	Parent=Os06t0594200-01
Chr06	irgsp1_rep	mRNA	23367126	23368775	.	-	.	ID=Os06t0594300-01;Name=Os06t0594300-01;Locus_id=Os06g0594300;Note=Hypothetical protein.;Transcript_evidence=AK110986 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-174-D04;Expression=AK110986;TENOR=Os06t0594300-01;KEGG=Os06t0594300-01
Chr06	irgsp1_rep	five_prime_UTR	23368681	23368775	.	-	.	Parent=Os06t0594300-01
Chr06	irgsp1_rep	CDS	23367496	23368680	.	-	0	Parent=Os06t0594300-01
Chr06	irgsp1_rep	three_prime_UTR	23367126	23367495	.	-	.	Parent=Os06t0594300-01
Chr06	irgsp1_rep	mRNA	23367376	23368829	.	+	.	ID=Os06t0594400-02;Name=Os06t0594400-02;Locus_id=Os06g0594400;RAP-DB Gene Symbol Synonym(s)=OsKMD2;RAP-DB Gene Name Synonym(s)=KISS ME DEADLY2;Oryzabase Gene Symbol Synonym(s)=OsKMD2%2C OsFbox314%2C Os_F0507;Oryzabase Gene Name Synonym(s)=KISS ME DEADLY2%2C KISS ME DEADLY 2%2C F-box protein 314;Note=KMD family of F-box protein%2C Negative regulation of cytokinin signalling;Transcript_evidence=AK065435,AK072246;ORF_evidence=Q69UE9;GO=Molecular Function: protein binding (GO:0005515);InterPro=Kelch-type beta propeller (IPR015915),F-box domain (IPR001810),Kelch repeat type 1 (IPR006652);NIAS_FLcDNA=J013022O04,J023001I15;Manual Curation=July 21%2C 2020;Literature_PMID=24675172;Oryzabase=16704;Expression=AK065435;TENOR=Os06t0594400-02;KEGG=Os06t0594400-02
Chr06	irgsp1_rep	five_prime_UTR	23367376	23367490	.	+	.	Parent=Os06t0594400-02
Chr06	irgsp1_rep	CDS	23367491	23368636	.	+	0	Parent=Os06t0594400-02
Chr06	irgsp1_rep	three_prime_UTR	23368637	23368829	.	+	.	Parent=Os06t0594400-02
Chr06	irgsp1_rep	mRNA	23379156	23381421	.	-	.	ID=Os06t0594600-01;Name=Os06t0594600-01;Locus_id=Os06g0594600;RAP-DB Gene Symbol Synonym(s)=OsAT10%2C OsAt10;RAP-DB Gene Name Synonym(s)=acyltransferase10;CGSNL Gene Symbol=AT10;CGSNL Gene Name=ACYLTRANSFERASE 10;Oryzabase Gene Symbol Synonym(s)=OsAT10%2C OsAt10;Oryzabase Gene Name Synonym(s)=acyltransferase 10;Note=BAHD acyltransferase%2C Glucuronoarabinoxylan modification in grass cell wall;Transcript_evidence=Inferred from literature;ORF_evidence=Q69UE6;GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);Manual Curation=April 3%2C 2014;Literature_PMID=23391577;Oryzabase=11742;TENOR=Os06t0594600-00
Chr06	irgsp1_rep	five_prime_UTR	23381347	23381421	.	-	.	Parent=Os06t0594600-01
Chr06	irgsp1_rep	CDS	23380852	23381346	.	-	0	Parent=Os06t0594600-01
Chr06	irgsp1_rep	CDS	23379483	23380319	.	-	0	Parent=Os06t0594600-01
Chr06	irgsp1_rep	three_prime_UTR	23379156	23379482	.	-	.	Parent=Os06t0594600-01
Chr06	irgsp1_rep	mRNA	23379509	23381032	.	+	.	ID=Os06t0594650-00;Name=Os06t0594650-00;Locus_id=Os06g0594650;Note=Hypothetical protein.;Transcript_evidence=AK360634 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0594650-00
Chr06	irgsp1_rep	five_prime_UTR	23379509	23379509	.	+	.	Parent=Os06t0594650-00
Chr06	irgsp1_rep	CDS	23379510	23380330	.	+	0	Parent=Os06t0594650-00
Chr06	irgsp1_rep	CDS	23380867	23380999	.	+	1	Parent=Os06t0594650-00
Chr06	irgsp1_rep	three_prime_UTR	23381000	23381032	.	+	.	Parent=Os06t0594650-00
Chr06	irgsp1_rep	mRNA	23393217	23393611	.	+	.	ID=Os06t0594940-00;Name=Os06t0594940-00;Locus_id=Os06g0594940;Note=Non-protein coding transcript.;Transcript_evidence=AK241911 (DDBJ%2C Secondary hit);ORF_evidence=NONE;TENOR=Os06t0594940-00
Chr06	irgsp1_rep	exon	23393217	23393611	.	+	.	Parent=Os06t0594940-00
Chr06	irgsp1_rep	mRNA	23406837	23407305	.	-	.	ID=Os06t0595180-00;Name=Os06t0595180-00;Locus_id=Os06g0595180;Note=Conserved hypothetical protein.;Transcript_evidence=CU405858 (DDBJ%2C Secondary hit);ORF_evidence=NP_001046038.1 (RefSeq);TENOR=Os06t0595180-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	23407102	23407305	.	-	.	Parent=Os06t0595180-00
Chr06	irgsp1_rep	CDS	23406868	23407101	.	-	0	Parent=Os06t0595180-00
Chr06	irgsp1_rep	three_prime_UTR	23406837	23406867	.	-	.	Parent=Os06t0595180-00
Chr06	irgsp1_rep	mRNA	23430649	23433662	.	+	.	ID=Os06t0595433-00;Name=Os06t0595433-00;Locus_id=Os06g0595433;Note=Transposase%2C IS4-like domain containing protein.;Transcript_evidence=AK064122 (DDBJ%2C Secondary hit);ORF_evidence=Q948B6 (UniProt);GO=Biological Process: transposition%2C DNA-mediated (GO:0006313),Molecular Function: DNA binding (GO:0003677),Molecular Function: transposase activity (GO:0004803);InterPro=Transposase%2C IS4-like (IPR002559);TENOR=Os06t0595433-00
Chr06	irgsp1_rep	five_prime_UTR	23430649	23430683	.	+	.	Parent=Os06t0595433-00
Chr06	irgsp1_rep	five_prime_UTR	23431668	23431764	.	+	.	Parent=Os06t0595433-00
Chr06	irgsp1_rep	five_prime_UTR	23432276	23432282	.	+	.	Parent=Os06t0595433-00
Chr06	irgsp1_rep	CDS	23432283	23432789	.	+	0	Parent=Os06t0595433-00
Chr06	irgsp1_rep	CDS	23432873	23433553	.	+	0	Parent=Os06t0595433-00
Chr06	irgsp1_rep	three_prime_UTR	23433554	23433662	.	+	.	Parent=Os06t0595433-00
Chr06	irgsp1_rep	mRNA	23432872	23435035	.	-	.	ID=Os06t0595566-00;Name=Os06t0595566-00;Locus_id=Os06g0595566;Note=Hypothetical protein.;Transcript_evidence=tplb0043a14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0595566-00
Chr06	irgsp1_rep	five_prime_UTR	23434940	23435035	.	-	.	Parent=Os06t0595566-00
Chr06	irgsp1_rep	CDS	23434895	23434939	.	-	0	Parent=Os06t0595566-00
Chr06	irgsp1_rep	CDS	23434587	23434811	.	-	0	Parent=Os06t0595566-00
Chr06	irgsp1_rep	three_prime_UTR	23434481	23434586	.	-	.	Parent=Os06t0595566-00
Chr06	irgsp1_rep	three_prime_UTR	23434302	23434382	.	-	.	Parent=Os06t0595566-00
Chr06	irgsp1_rep	three_prime_UTR	23433937	23434220	.	-	.	Parent=Os06t0595566-00
Chr06	irgsp1_rep	three_prime_UTR	23432872	23433771	.	-	.	Parent=Os06t0595566-00
Chr06	irgsp1_rep	mRNA	23433726	23435090	.	+	.	ID=Os06t0595700-00;Name=Os06t0595700-00;Locus_id=Os06g0595700;Note=Myb/SANT-like domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001057982.1 (RefSeq);InterPro=Myb/SANT-like domain (IPR024752);TENOR=Os06t0595700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	23433726	23433834	.	+	0	Parent=Os06t0595700-00
Chr06	irgsp1_rep	CDS	23433914	23434221	.	+	2	Parent=Os06t0595700-00
Chr06	irgsp1_rep	CDS	23434303	23434375	.	+	0	Parent=Os06t0595700-00
Chr06	irgsp1_rep	CDS	23434474	23435090	.	+	2	Parent=Os06t0595700-00
Chr06	irgsp1_rep	mRNA	23438800	23440545	.	+	.	ID=Os06t0595800-01;Name=Os06t0595800-01;Locus_id=Os06g0595800;CGSNL Gene Symbol=AT8;CGSNL Gene Name=ACYLTRANSFERASE 8;Oryzabase Gene Symbol Synonym(s)=OsAT8%2C OsAt8;Oryzabase Gene Name Synonym(s)=acyltransferase 8;Note=Transferase family protein.;Transcript_evidence=AK120657 (DDBJ%2C Best hit);ORF_evidence=B6TZV1 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J013158E04;Oryzabase=11740;Expression=AK120657;TENOR=Os06t0595800-01;KEGG=Os06t0595800-01
Chr06	irgsp1_rep	five_prime_UTR	23438800	23438874	.	+	.	Parent=Os06t0595800-01
Chr06	irgsp1_rep	CDS	23438875	23439330	.	+	0	Parent=Os06t0595800-01
Chr06	irgsp1_rep	CDS	23439440	23439494	.	+	0	Parent=Os06t0595800-01
Chr06	irgsp1_rep	CDS	23439626	23440410	.	+	2	Parent=Os06t0595800-01
Chr06	irgsp1_rep	three_prime_UTR	23440411	23440545	.	+	.	Parent=Os06t0595800-01
Chr06	irgsp1_rep	mRNA	23442839	23449453	.	-	.	ID=Os06t0595900-01;Name=Os06t0595900-01;Locus_id=Os06g0595900;RAP-DB Gene Symbol Synonym(s)=LC3;CGSNL Gene Symbol=LC3;CGSNL Gene Name=LEAF INCLINATION 3;Oryzabase Gene Symbol Synonym(s)=OsLC3;Oryzabase Gene Name Synonym(s)=LEAF INCLINATION3;Note=SPOC domain-containing protein%2C Regulator of leaf inclination;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Biological Process: transcription%2C DNA-templated (GO:0006351);InterPro=Transcription elongation factor S-II%2C central domain (IPR003618),Spen paralogue and orthologue SPOC%2C C-terminal (IPR012921);NIAS_FLcDNA=J013068F12 (truncated),001-030-F07 (truncated);Manual Curation=July 4%2C 2017;Literature_PMID=28500269;Oryzabase=22383;Expression=AK059610;TENOR=Os06t0595900-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	23449293	23449453	.	-	.	Parent=Os06t0595900-01
Chr06	irgsp1_rep	five_prime_UTR	23448471	23449181	.	-	.	Parent=Os06t0595900-01
Chr06	irgsp1_rep	five_prime_UTR	23448018	23448391	.	-	.	Parent=Os06t0595900-01
Chr06	irgsp1_rep	CDS	23447128	23448017	.	-	0	Parent=Os06t0595900-01
Chr06	irgsp1_rep	CDS	23446815	23446935	.	-	1	Parent=Os06t0595900-01
Chr06	irgsp1_rep	CDS	23444244	23444303	.	-	0	Parent=Os06t0595900-01
Chr06	irgsp1_rep	CDS	23443125	23444141	.	-	0	Parent=Os06t0595900-01
Chr06	irgsp1_rep	three_prime_UTR	23442839	23443124	.	-	.	Parent=Os06t0595900-01
Chr06	irgsp1_rep	mRNA	23458934	23464913	.	+	.	ID=Os06t0596200-00;Name=Os06t0596200-00;Locus_id=Os06g0596200;Note=Conserved hypothetical protein.;Transcript_evidence=CT836238 (DDBJ%2C Best hit);ORF_evidence=Q2QLN3 (UniProt);TENOR=Os06t0596200-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	23458934	23458935	.	+	.	Parent=Os06t0596200-00
Chr06	irgsp1_rep	CDS	23458936	23459280	.	+	0	Parent=Os06t0596200-00
Chr06	irgsp1_rep	three_prime_UTR	23459281	23459351	.	+	.	Parent=Os06t0596200-00
Chr06	irgsp1_rep	three_prime_UTR	23464714	23464913	.	+	.	Parent=Os06t0596200-00
Chr06	irgsp1_rep	mRNA	23467234	23471674	.	+	.	ID=Os06t0596300-01;Name=Os06t0596300-01;Locus_id=Os06g0596300;Note=Similar to Acyl-ACP thioesterase (Fragment).;Transcript_evidence=AK120303 (DDBJ%2C Best hit);ORF_evidence=NP_001147887.1 (RefSeq);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Molecular Function: thiolester hydrolase activity (GO:0016790);InterPro=Acyl-ACP thioesterase (IPR002864),Acyl-ACP-thioesterase%2C N-terminal (IPR021113);NIAS_FLcDNA=J013052L17;Expression=AK120303;TENOR=Os06t0596300-01;KEGG=Os06t0596300-01
Chr06	irgsp1_rep	five_prime_UTR	23467234	23467385	.	+	.	Parent=Os06t0596300-01
Chr06	irgsp1_rep	five_prime_UTR	23467984	23468048	.	+	.	Parent=Os06t0596300-01
Chr06	irgsp1_rep	CDS	23468049	23468561	.	+	0	Parent=Os06t0596300-01
Chr06	irgsp1_rep	CDS	23468642	23468775	.	+	0	Parent=Os06t0596300-01
Chr06	irgsp1_rep	CDS	23469270	23469383	.	+	1	Parent=Os06t0596300-01
Chr06	irgsp1_rep	CDS	23469581	23469764	.	+	1	Parent=Os06t0596300-01
Chr06	irgsp1_rep	CDS	23469864	23469992	.	+	0	Parent=Os06t0596300-01
Chr06	irgsp1_rep	three_prime_UTR	23469993	23471674	.	+	.	Parent=Os06t0596300-01
Chr06	irgsp1_rep	mRNA	23501973	23503491	.	+	.	ID=Os06t0597000-01;Name=Os06t0597000-01;Locus_id=Os06g0597000;RAP-DB Gene Symbol Synonym(s)=OsIAA23;RAP-DB Gene Name Synonym(s)=Aux/IAA gene family member 23;CGSNL Gene Symbol=IAA23;Oryzabase Gene Symbol Synonym(s)=OsIAA23;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 23%2C Auxin-responsive Aux/IAA gene family member 23;Note=Auxin/Indole-3-Acetic Acid (Aux/IAA) gene family member%2C Postembryonic maintenance of QC (quiescent center)%2C Development of roots and shoots;Transcript_evidence=AK069376;ORF_evidence=Q69VE0;GO=Molecular Function: protein binding (GO:0005515);InterPro=AUX/IAA domain (IPR033389),PB1 domain (IPR000270);NIAS_FLcDNA=J023012K19;Manual Curation=April 22%2C 2019;Literature_PMID=31004275,21736653;Oryzabase=10452;Expression=AK069376;TENOR=Os06t0597000-01;KEGG=Os06t0597000-01
Chr06	irgsp1_rep	five_prime_UTR	23501973	23502091	.	+	.	Parent=Os06t0597000-01
Chr06	irgsp1_rep	CDS	23502092	23502267	.	+	0	Parent=Os06t0597000-01
Chr06	irgsp1_rep	CDS	23502353	23502673	.	+	1	Parent=Os06t0597000-01
Chr06	irgsp1_rep	CDS	23502763	23502824	.	+	1	Parent=Os06t0597000-01
Chr06	irgsp1_rep	CDS	23502943	23502965	.	+	2	Parent=Os06t0597000-01
Chr06	irgsp1_rep	three_prime_UTR	23502966	23503491	.	+	.	Parent=Os06t0597000-01
Chr06	irgsp1_rep	mRNA	23501973	23503416	.	+	.	ID=Os06t0597000-02;Name=Os06t0597000-02;Locus_id=Os06g0597000;CGSNL Gene Symbol=IAA23;Oryzabase Gene Symbol Synonym(s)=OsIAA23;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 23%2C Auxin-responsive Aux/IAA gene family member 23;Note=Similar to Auxin-responsive protein IAA23.;Transcript_evidence=AK061037 (DDBJ%2C Best hit);ORF_evidence=Q69VE0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634);InterPro=AUX/IAA protein (IPR003311);NIAS_FLcDNA=006-205-B07;Oryzabase=10452;Expression=AK061037;TENOR=Os06t0597000-02;KEGG=Os06t0597000-02
Chr06	irgsp1_rep	five_prime_UTR	23501973	23501973	.	+	.	Parent=Os06t0597000-02
Chr06	irgsp1_rep	CDS	23501974	23502267	.	+	0	Parent=Os06t0597000-02
Chr06	irgsp1_rep	CDS	23502353	23502824	.	+	0	Parent=Os06t0597000-02
Chr06	irgsp1_rep	CDS	23502943	23502965	.	+	2	Parent=Os06t0597000-02
Chr06	irgsp1_rep	three_prime_UTR	23502966	23503416	.	+	.	Parent=Os06t0597000-02
Chr06	irgsp1_rep	mRNA	23505601	23510146	.	+	.	ID=Os06t0597200-01;Name=Os06t0597200-01;Locus_id=Os06g0597200;Oryzabase Gene Symbol Synonym(s)=OsPP2C57%2C PP2C57%2C OsPP89;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C57%2C protein phosphatase 2C 57%2C protein phosphatase 89;Note=Similar to DNA-binding protein phosphatase 2C.;Transcript_evidence=AK070996 (DDBJ%2C Best hit);ORF_evidence=B4FDN2 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J023080K08;Oryzabase=17930;Expression=AK070996;TENOR=Os06t0597200-01;KEGG=Os06t0597200-01 (EC:3.1.3.16)
Chr06	irgsp1_rep	five_prime_UTR	23505601	23505725	.	+	.	Parent=Os06t0597200-01
Chr06	irgsp1_rep	CDS	23505726	23505839	.	+	0	Parent=Os06t0597200-01
Chr06	irgsp1_rep	CDS	23508119	23508328	.	+	0	Parent=Os06t0597200-01
Chr06	irgsp1_rep	CDS	23508501	23508712	.	+	0	Parent=Os06t0597200-01
Chr06	irgsp1_rep	CDS	23509293	23509860	.	+	1	Parent=Os06t0597200-01
Chr06	irgsp1_rep	three_prime_UTR	23509861	23510146	.	+	.	Parent=Os06t0597200-01
Chr06	irgsp1_rep	mRNA	23506669	23510147	.	+	.	ID=Os06t0597200-02;Name=Os06t0597200-02;Locus_id=Os06g0597200;Oryzabase Gene Symbol Synonym(s)=OsPP2C57%2C PP2C57%2C OsPP89;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C57%2C protein phosphatase 2C 57%2C protein phosphatase 89;Note=Similar to Protein phosphatase 2C.;Transcript_evidence=AK068472 (DDBJ%2C Best hit);ORF_evidence=B4FDN2 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J013155M07;Oryzabase=17930;Expression=AK068472;TENOR=Os06t0597200-02;KEGG=Os06t0597200-02 (EC:3.1.3.16)
Chr06	irgsp1_rep	five_prime_UTR	23506669	23507112	.	+	.	Parent=Os06t0597200-02
Chr06	irgsp1_rep	CDS	23507113	23507160	.	+	0	Parent=Os06t0597200-02
Chr06	irgsp1_rep	CDS	23508119	23508328	.	+	0	Parent=Os06t0597200-02
Chr06	irgsp1_rep	CDS	23508501	23508712	.	+	0	Parent=Os06t0597200-02
Chr06	irgsp1_rep	CDS	23509293	23509860	.	+	1	Parent=Os06t0597200-02
Chr06	irgsp1_rep	three_prime_UTR	23509861	23510147	.	+	.	Parent=Os06t0597200-02
Chr06	irgsp1_rep	mRNA	23524605	23526405	.	+	.	ID=Os06t0597250-00;Name=Os06t0597250-00;Locus_id=Os06g0597250;Note=Similar to B protein.;Transcript_evidence=EF441275 (DDBJ%2C Best hit);ORF_evidence=Q8H956 (UniProt);GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Putative harbinger transposase-derived nuclease (IPR006912);TENOR=Os06t0597250-00
Chr06	irgsp1_rep	five_prime_UTR	23524605	23524707	.	+	.	Parent=Os06t0597250-00
Chr06	irgsp1_rep	CDS	23524830	23526168	.	+	0	Parent=Os06t0597250-00
Chr06	irgsp1_rep	CDS	23526338	23526342	.	+	2	Parent=Os06t0597250-00
Chr06	irgsp1_rep	three_prime_UTR	23526343	23526405	.	+	.	Parent=Os06t0597250-00
Chr06	irgsp1_rep	mRNA	23540501	23547137	.	+	.	ID=Os06t0597400-01;Name=Os06t0597400-01;Locus_id=Os06g0597400;RAP-DB Gene Symbol Synonym(s)=PNH1%2C OsPNH1;RAP-DB Gene Name Synonym(s)=PINHEAD 1%2C Oryza sativa pinhead1%2C PINHEAD1%2C ZLL/PNH homologous protein%2C Protein argonaute PNH1%2C Protein PINHEAD homolog 1%2C pinhead1%2C OsPINHEAD1;CGSNL Gene Symbol=PNH1;CGSNL Gene Name=PINHEAD 1;Oryzabase Gene Symbol Synonym(s)=OsPNH1;Oryzabase Gene Name Synonym(s)=Oryza sativa pinhead1%2C PINHEAD1%2C ZLL/PNH homologous protein%2C Protein argonaute PNH1%2C Protein PINHEAD homolog 1%2C pinhead1%2C OsPINHEAD1;Note=PINHEAD/ZWILLE (PNH/ZLL) homologous protein%2C Shoot apical meristem (SAM) maintenance and leaf development;Transcript_evidence=AB081950 (Taichung 65);ORF_evidence=Q69VD5;GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515);InterPro=Protein argonaute%2C N-terminal (IPR032474),Argonaute%2C linker 1 domain (IPR014811),PAZ domain (IPR003100),Argonaute linker 2 domain (IPR032472),Protein argonaute%2C Mid domain (IPR032473),Ribonuclease H-like domain (IPR012337),Piwi domain (IPR003165);Manual Curation=December 8%2C 2016;Literature_PMID=12000455;Oryzabase=3035;TENOR=Os06t0597400-00
Chr06	irgsp1_rep	five_prime_UTR	23540501	23540763	.	+	.	Parent=Os06t0597400-01
Chr06	irgsp1_rep	CDS	23540764	23541234	.	+	0	Parent=Os06t0597400-01
Chr06	irgsp1_rep	CDS	23541339	23541550	.	+	0	Parent=Os06t0597400-01
Chr06	irgsp1_rep	CDS	23541634	23541780	.	+	1	Parent=Os06t0597400-01
Chr06	irgsp1_rep	CDS	23541866	23541999	.	+	1	Parent=Os06t0597400-01
Chr06	irgsp1_rep	CDS	23542094	23542203	.	+	2	Parent=Os06t0597400-01
Chr06	irgsp1_rep	CDS	23542363	23542469	.	+	0	Parent=Os06t0597400-01
Chr06	irgsp1_rep	CDS	23542697	23542835	.	+	1	Parent=Os06t0597400-01
Chr06	irgsp1_rep	CDS	23542938	23543054	.	+	0	Parent=Os06t0597400-01
Chr06	irgsp1_rep	CDS	23543389	23543496	.	+	0	Parent=Os06t0597400-01
Chr06	irgsp1_rep	CDS	23543579	23543650	.	+	0	Parent=Os06t0597400-01
Chr06	irgsp1_rep	CDS	23543760	23543882	.	+	0	Parent=Os06t0597400-01
Chr06	irgsp1_rep	CDS	23543988	23544147	.	+	0	Parent=Os06t0597400-01
Chr06	irgsp1_rep	CDS	23544237	23544358	.	+	2	Parent=Os06t0597400-01
Chr06	irgsp1_rep	CDS	23544477	23544614	.	+	0	Parent=Os06t0597400-01
Chr06	irgsp1_rep	CDS	23544694	23544836	.	+	0	Parent=Os06t0597400-01
Chr06	irgsp1_rep	CDS	23544957	23545019	.	+	1	Parent=Os06t0597400-01
Chr06	irgsp1_rep	CDS	23545219	23545282	.	+	1	Parent=Os06t0597400-01
Chr06	irgsp1_rep	CDS	23545361	23545496	.	+	0	Parent=Os06t0597400-01
Chr06	irgsp1_rep	CDS	23545775	23545848	.	+	2	Parent=Os06t0597400-01
Chr06	irgsp1_rep	CDS	23546416	23546510	.	+	0	Parent=Os06t0597400-01
Chr06	irgsp1_rep	CDS	23546603	23546634	.	+	1	Parent=Os06t0597400-01
Chr06	irgsp1_rep	CDS	23546756	23546928	.	+	2	Parent=Os06t0597400-01
Chr06	irgsp1_rep	three_prime_UTR	23546929	23547137	.	+	.	Parent=Os06t0597400-01
Chr06	irgsp1_rep	mRNA	23547462	23550396	.	-	.	ID=Os06t0597500-01;Name=Os06t0597500-01;Locus_id=Os06g0597500;RAP-DB Gene Symbol Synonym(s)=SPED1;RAP-DB Gene Name Synonym(s)=SHORTENED PEDICELS AND/OR SECONDARY BRANCHES 1;Oryzabase Gene Symbol Synonym(s)=SPED1%2C OsSPED1;Oryzabase Gene Name Synonym(s)=SHORTENED PEDICELS AND/OR SECONDARY BRANCHES 1%2C shortened pedicels-D%2C shortened pedicels 1;Note=Pentatricopeptide repeat protein%2C Regulation of inflorescence branch development;Transcript_evidence=Inferred from literature;ORF_evidence=Q69VD4;GO=Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical domain (IPR011990),Pentatricopeptide repeat (IPR002885);Manual Curation=December 8%2C 2016;Literature_PMID=24950892;Oryzabase=18338;TENOR=Os06t0597500-00;KEGG=Os06t0597500-00
Chr06	irgsp1_rep	five_prime_UTR	23549622	23550396	.	-	.	Parent=Os06t0597500-01
Chr06	irgsp1_rep	CDS	23548029	23549621	.	-	0	Parent=Os06t0597500-01
Chr06	irgsp1_rep	three_prime_UTR	23547462	23548028	.	-	.	Parent=Os06t0597500-01
Chr06	irgsp1_rep	mRNA	23549713	23552682	.	+	.	ID=Os06t0597600-01;Name=Os06t0597600-01;Locus_id=Os06g0597600;Note=Aromatic-ring hydroxylase family protein.;Transcript_evidence=AK120804 (DDBJ%2C Best hit);ORF_evidence=NP_001151524.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Monooxygenase%2C FAD-binding (IPR002938),Aromatic-ring hydroxylase-like (IPR003042);NIAS_FLcDNA=J023013C21;Expression=AK120804;TENOR=Os06t0597600-01;KEGG=Os06t0597600-01
Chr06	irgsp1_rep	five_prime_UTR	23549713	23549760	.	+	.	Parent=Os06t0597600-01
Chr06	irgsp1_rep	CDS	23549761	23549994	.	+	0	Parent=Os06t0597600-01
Chr06	irgsp1_rep	CDS	23550085	23550401	.	+	0	Parent=Os06t0597600-01
Chr06	irgsp1_rep	CDS	23551667	23551877	.	+	1	Parent=Os06t0597600-01
Chr06	irgsp1_rep	CDS	23551959	23552492	.	+	0	Parent=Os06t0597600-01
Chr06	irgsp1_rep	three_prime_UTR	23552493	23552682	.	+	.	Parent=Os06t0597600-01
Chr06	irgsp1_rep	mRNA	23556493	23559215	.	+	.	ID=Os06t0597800-01;Name=Os06t0597800-01;Locus_id=Os06g0597800;Note=FAR1 domain containing protein.;Transcript_evidence=AK120083 (DDBJ%2C Best hit);ORF_evidence=A2YEP3 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=FAR1 DNA binding domain (IPR004330),Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);NIAS_FLcDNA=J013014J20;Expression=AK120083;TENOR=Os06t0597800-01;KEGG=Os06t0597800-01
Chr06	irgsp1_rep	five_prime_UTR	23556493	23556649	.	+	.	Parent=Os06t0597800-01
Chr06	irgsp1_rep	five_prime_UTR	23556752	23556904	.	+	.	Parent=Os06t0597800-01
Chr06	irgsp1_rep	CDS	23556905	23558914	.	+	0	Parent=Os06t0597800-01
Chr06	irgsp1_rep	three_prime_UTR	23558915	23559215	.	+	.	Parent=Os06t0597800-01
Chr06	irgsp1_rep	mRNA	23559708	23563028	.	+	.	ID=Os06t0597900-01;Name=Os06t0597900-01;Locus_id=Os06g0597900;Note=SOUL haem-binding protein domain containing protein.;Transcript_evidence=AK065544 (DDBJ%2C Best hit);ORF_evidence=NP_197514.2 (RefSeq);InterPro=SOUL haem-binding protein (IPR006917),Regulatory factor%2C effector%2C bacterial (IPR011256),Protein of unknown function DUF2358 (IPR018790);NIAS_FLcDNA=J013030K22;Expression=AK065544;TENOR=Os06t0597900-01;KEGG=Os06t0597900-01
Chr06	irgsp1_rep	five_prime_UTR	23559708	23559726	.	+	.	Parent=Os06t0597900-01
Chr06	irgsp1_rep	CDS	23559727	23560122	.	+	0	Parent=Os06t0597900-01
Chr06	irgsp1_rep	CDS	23560225	23560362	.	+	0	Parent=Os06t0597900-01
Chr06	irgsp1_rep	CDS	23561158	23561226	.	+	0	Parent=Os06t0597900-01
Chr06	irgsp1_rep	CDS	23561304	23561375	.	+	0	Parent=Os06t0597900-01
Chr06	irgsp1_rep	CDS	23561625	23561707	.	+	0	Parent=Os06t0597900-01
Chr06	irgsp1_rep	CDS	23561787	23561918	.	+	1	Parent=Os06t0597900-01
Chr06	irgsp1_rep	CDS	23562059	23562269	.	+	1	Parent=Os06t0597900-01
Chr06	irgsp1_rep	CDS	23562538	23562582	.	+	0	Parent=Os06t0597900-01
Chr06	irgsp1_rep	three_prime_UTR	23562583	23562658	.	+	.	Parent=Os06t0597900-01
Chr06	irgsp1_rep	three_prime_UTR	23562885	23563028	.	+	.	Parent=Os06t0597900-01
Chr06	irgsp1_rep	mRNA	23608738	23611096	.	+	.	ID=Os06t0598800-01;Name=Os06t0598800-01;Locus_id=Os06g0598800;CGSNL Gene Symbol=WSL1;CGSNL Gene Name=WAX CRYSTAL-SPARSE LEAF 1;Oryzabase Gene Symbol Synonym(s)=WSL1%2C FAE'%2C OsFAE1'%2C OsCER6;Oryzabase Gene Name Synonym(s)=Wax Crystal-Sparse Leaf1%2C FATTY ACID ELONGATION1'%2C fatty acid elongase 1'%2C ECERIFERUM 6;Note=Similar to Fatty acid elongase 1-like protein.;Transcript_evidence=AK101377 (DDBJ%2C Best hit);ORF_evidence=A2YEP6 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: metabolic process (GO:0008152),Biological Process: lipid biosynthetic process (GO:0008610),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Very-long-chain 3-ketoacyl-CoA synthase (IPR012392),FAE1/Type III polyketide synthase-like protein (IPR013601),3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (IPR013747),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);NIAS_FLcDNA=J033036C04;Oryzabase=15286;Expression=AK101377;TENOR=Os06t0598800-01;KEGG=Os06t0598800-01
Chr06	irgsp1_rep	five_prime_UTR	23608738	23608933	.	+	.	Parent=Os06t0598800-01
Chr06	irgsp1_rep	five_prime_UTR	23609160	23609165	.	+	.	Parent=Os06t0598800-01
Chr06	irgsp1_rep	CDS	23609166	23610725	.	+	0	Parent=Os06t0598800-01
Chr06	irgsp1_rep	three_prime_UTR	23610726	23611096	.	+	.	Parent=Os06t0598800-01
Chr06	irgsp1_rep	mRNA	23609159	23610725	.	-	.	ID=Os06t0598850-00;Name=Os06t0598850-00;Locus_id=Os06g0598850;Note=Hypothetical protein.;Transcript_evidence=tplb0055l20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0598850-00
Chr06	irgsp1_rep	five_prime_UTR	23610396	23610725	.	-	.	Parent=Os06t0598850-00
Chr06	irgsp1_rep	CDS	23609159	23610395	.	-	0	Parent=Os06t0598850-00
Chr06	irgsp1_rep	mRNA	23613188	23621153	.	-	.	ID=Os06t0598900-01;Name=Os06t0598900-01;Locus_id=Os06g0598900;Oryzabase Gene Symbol Synonym(s)=OsWD40-130;Note=Similar to Serine-threonine kinase receptor-associated protein (UNR-interacting protein) (WD-40 repeat protein PT-WD) (MAP activator with WD repeats).;Transcript_evidence=AK100386 (DDBJ%2C Best hit);ORF_evidence=B6T3R6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J023085I20;Oryzabase=10811;Expression=AK100386;TENOR=Os06t0598900-01;KEGG=Os06t0598900-01
Chr06	irgsp1_rep	five_prime_UTR	23620798	23621153	.	-	.	Parent=Os06t0598900-01
Chr06	irgsp1_rep	CDS	23620680	23620797	.	-	0	Parent=Os06t0598900-01
Chr06	irgsp1_rep	CDS	23617183	23617318	.	-	2	Parent=Os06t0598900-01
Chr06	irgsp1_rep	CDS	23615723	23615804	.	-	1	Parent=Os06t0598900-01
Chr06	irgsp1_rep	CDS	23615153	23615328	.	-	0	Parent=Os06t0598900-01
Chr06	irgsp1_rep	CDS	23614909	23615046	.	-	1	Parent=Os06t0598900-01
Chr06	irgsp1_rep	CDS	23614673	23614812	.	-	1	Parent=Os06t0598900-01
Chr06	irgsp1_rep	CDS	23613630	23613856	.	-	2	Parent=Os06t0598900-01
Chr06	irgsp1_rep	CDS	23613609	23613620	.	-	0	Parent=Os06t0598900-01
Chr06	irgsp1_rep	three_prime_UTR	23613188	23613608	.	-	.	Parent=Os06t0598900-01
Chr06	irgsp1_rep	mRNA	23613214	23613560	.	-	.	ID=Os06t0598900-02;Name=Os06t0598900-02;Locus_id=Os06g0598900;Oryzabase Gene Symbol Synonym(s)=OsWD40-130;Note=Hypothetical gene.;Transcript_evidence=AK105052 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-042-C03;Oryzabase=10811;TENOR=Os06t0598900-02
Chr06	irgsp1_rep	five_prime_UTR	23613549	23613560	.	-	.	Parent=Os06t0598900-02
Chr06	irgsp1_rep	CDS	23613214	23613548	.	-	0	Parent=Os06t0598900-02
Chr06	irgsp1_rep	mRNA	23632462	23634139	.	+	.	ID=Os06t0599200-01;Name=Os06t0599200-01;Locus_id=Os06g0599200;Note=CytoChrome P450 family protein.;Transcript_evidence=AK318614 (DDBJ%2C Best hit);ORF_evidence=C8C9S7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J100087N14;TENOR=Os06t0599200-01;KEGG=Os06t0599200-01
Chr06	irgsp1_rep	five_prime_UTR	23632462	23632520	.	+	.	Parent=Os06t0599200-01
Chr06	irgsp1_rep	CDS	23632521	23634023	.	+	0	Parent=Os06t0599200-01
Chr06	irgsp1_rep	three_prime_UTR	23634024	23634139	.	+	.	Parent=Os06t0599200-01
Chr06	irgsp1_rep	mRNA	23649633	23649980	.	-	.	ID=Os06t0599400-00;Name=Os06t0599400-00;Locus_id=Os06g0599400;Note=Conserved hypothetical protein.;Transcript_evidence=FP095252 (DDBJ);ORF_evidence=Q69X54 (UniProt);TENOR=Os06t0599400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	23649633	23649980	.	-	0	Parent=Os06t0599400-00
Chr06	irgsp1_rep	mRNA	23656248	23668376	.	+	.	ID=Os06t0599700-00;Name=Os06t0599700-00;Locus_id=Os06g0599700;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FU07 (UniProt);TENOR=Os06t0599700-00
Chr06	irgsp1_rep	CDS	23656248	23657252	.	+	0	Parent=Os06t0599700-00
Chr06	irgsp1_rep	CDS	23662057	23662156	.	+	0	Parent=Os06t0599700-00
Chr06	irgsp1_rep	CDS	23662369	23662463	.	+	2	Parent=Os06t0599700-00
Chr06	irgsp1_rep	CDS	23668305	23668376	.	+	0	Parent=Os06t0599700-00
Chr06	irgsp1_rep	mRNA	23685179	23688096	.	+	.	ID=Os06t0600100-01;Name=Os06t0600100-01;Locus_id=Os06g0600100;Note=Similar to TAT-binding protein homolog (Fragment).;Transcript_evidence=AK065619 (DDBJ%2C Best hit);ORF_evidence=Q9FEB6 (UniProt);GO=Biological Process: protein catabolic process (GO:0030163),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960),26S proteasome subunit P45 (IPR005937);NIAS_FLcDNA=J013034M24;Expression=AK065619;TENOR=Os06t0600100-01;KEGG=Os06t0600100-01
Chr06	irgsp1_rep	five_prime_UTR	23685179	23685229	.	+	.	Parent=Os06t0600100-01
Chr06	irgsp1_rep	CDS	23685230	23685443	.	+	0	Parent=Os06t0600100-01
Chr06	irgsp1_rep	CDS	23685754	23685851	.	+	2	Parent=Os06t0600100-01
Chr06	irgsp1_rep	CDS	23686326	23686613	.	+	0	Parent=Os06t0600100-01
Chr06	irgsp1_rep	CDS	23686697	23686860	.	+	0	Parent=Os06t0600100-01
Chr06	irgsp1_rep	CDS	23686996	23687251	.	+	1	Parent=Os06t0600100-01
Chr06	irgsp1_rep	CDS	23687358	23687468	.	+	0	Parent=Os06t0600100-01
Chr06	irgsp1_rep	CDS	23687761	23687901	.	+	0	Parent=Os06t0600100-01
Chr06	irgsp1_rep	three_prime_UTR	23687902	23688096	.	+	.	Parent=Os06t0600100-01
Chr06	irgsp1_rep	mRNA	23686450	23687235	.	-	.	ID=Os06t0600200-00;Name=Os06t0600200-00;Locus_id=Os06g0600200;Note=Non-protein coding transcript.;Transcript_evidence=BT085228 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0600200-00
Chr06	irgsp1_rep	exon	23687007	23687235	.	-	.	Parent=Os06t0600200-00
Chr06	irgsp1_rep	exon	23686712	23686871	.	-	.	Parent=Os06t0600200-00
Chr06	irgsp1_rep	exon	23686450	23686620	.	-	.	Parent=Os06t0600200-00
Chr06	irgsp1_rep	mRNA	23689553	23691740	.	+	.	ID=Os06t0600301-00;Name=Os06t0600301-00;Locus_id=Os06g0600301;Note=Similar to GTP-binding nuclear protein Ran1B (Fragment).;Transcript_evidence=A2YEQ6 (UniProt);ORF_evidence=A2YEQ6 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: intracellular protein transport (GO:0006886),Biological Process: nucleocytoplasmic transport (GO:0006913),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Cellular Component: membrane (GO:0016020),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Ran GTPase (IPR002041),Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C Ras type (IPR020849);TENOR=Os06t0600301-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	23689553	23689637	.	+	0	Parent=Os06t0600301-00
Chr06	irgsp1_rep	CDS	23689745	23689801	.	+	2	Parent=Os06t0600301-00
Chr06	irgsp1_rep	CDS	23689961	23690078	.	+	2	Parent=Os06t0600301-00
Chr06	irgsp1_rep	CDS	23690966	23691055	.	+	1	Parent=Os06t0600301-00
Chr06	irgsp1_rep	CDS	23691144	23691323	.	+	1	Parent=Os06t0600301-00
Chr06	irgsp1_rep	CDS	23691468	23691545	.	+	1	Parent=Os06t0600301-00
Chr06	irgsp1_rep	CDS	23691668	23691740	.	+	1	Parent=Os06t0600301-00
Chr06	irgsp1_rep	mRNA	23689956	23691317	.	-	.	ID=Os06t0600350-00;Name=Os06t0600350-00;Locus_id=Os06g0600350;Note=Non-protein coding transcript.;Transcript_evidence=BT016258 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0600350-00
Chr06	irgsp1_rep	exon	23691127	23691317	.	-	.	Parent=Os06t0600350-00
Chr06	irgsp1_rep	exon	23690966	23691034	.	-	.	Parent=Os06t0600350-00
Chr06	irgsp1_rep	exon	23689956	23690078	.	-	.	Parent=Os06t0600350-00
Chr06	irgsp1_rep	mRNA	23704715	23707248	.	+	.	ID=Os06t0600400-01;Name=Os06t0600400-01;Locus_id=Os06g0600400;RAP-DB Gene Symbol Synonym(s)=CYP734A4;RAP-DB Gene Name Synonym(s)=CytoChrome P450 734A4;CGSNL Gene Symbol=CYP734A4;CGSNL Gene Name=CYTOCHROME P450 HYDROXYLASE 734A4;Oryzabase Gene Symbol Synonym(s)=OsCYP734A4;Note=CytoChrome P450 monooxygenase%2C Regulation of panicle exsertion and uppermost internode;Transcript_evidence=AK106672;ORF_evidence=Q69XM6;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 superfamily (IPR036396),CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=002-114-A02;Manual Curation=September 25%2C 2019;Literature_PMID=31535313,21418356;Oryzabase=14296;Expression=AK106672;TENOR=Os06t0600400-01;KEGG=Os06t0600400-01
Chr06	irgsp1_rep	five_prime_UTR	23704715	23704816	.	+	.	Parent=Os06t0600400-01
Chr06	irgsp1_rep	CDS	23704817	23705090	.	+	0	Parent=Os06t0600400-01
Chr06	irgsp1_rep	CDS	23705169	23705392	.	+	2	Parent=Os06t0600400-01
Chr06	irgsp1_rep	CDS	23705499	23705746	.	+	0	Parent=Os06t0600400-01
Chr06	irgsp1_rep	CDS	23705845	23706247	.	+	1	Parent=Os06t0600400-01
Chr06	irgsp1_rep	CDS	23706350	23706817	.	+	0	Parent=Os06t0600400-01
Chr06	irgsp1_rep	three_prime_UTR	23706818	23707248	.	+	.	Parent=Os06t0600400-01
Chr06	irgsp1_rep	mRNA	23721777	23726845	.	-	.	ID=Os06t0600700-01;Name=Os06t0600700-01;Locus_id=Os06g0600700;Note=Agenet domain containing protein.;Transcript_evidence=AK064997 (DDBJ%2C Best hit);ORF_evidence=B6U0F3 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=Agenet (IPR008395),Tudor-like%2C plant (IPR014002);NIAS_FLcDNA=J013001D22;Expression=AK064997;TENOR=Os06t0600700-01;KEGG=Os06t0600700-01
Chr06	irgsp1_rep	five_prime_UTR	23726647	23726845	.	-	.	Parent=Os06t0600700-01
Chr06	irgsp1_rep	five_prime_UTR	23725778	23725798	.	-	.	Parent=Os06t0600700-01
Chr06	irgsp1_rep	CDS	23725382	23725777	.	-	0	Parent=Os06t0600700-01
Chr06	irgsp1_rep	CDS	23724876	23725172	.	-	0	Parent=Os06t0600700-01
Chr06	irgsp1_rep	CDS	23723456	23723665	.	-	0	Parent=Os06t0600700-01
Chr06	irgsp1_rep	three_prime_UTR	23721777	23723455	.	-	.	Parent=Os06t0600700-01
Chr06	irgsp1_rep	mRNA	23724166	23726844	.	-	.	ID=Os06t0600700-02;Name=Os06t0600700-02;Locus_id=Os06g0600700;Note=Similar to RNA binding protein.;Transcript_evidence=AK102773 (DDBJ%2C Best hit);ORF_evidence=B6U0F3 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=EMSY N-terminal (IPR005491),Agenet (IPR008395),Tudor-like%2C plant (IPR014002);NIAS_FLcDNA=J033107H05;Expression=AK102773;TENOR=Os06t0600700-02;KEGG=Os06t0600700-02
Chr06	irgsp1_rep	five_prime_UTR	23726647	23726844	.	-	.	Parent=Os06t0600700-02
Chr06	irgsp1_rep	five_prime_UTR	23725778	23725798	.	-	.	Parent=Os06t0600700-02
Chr06	irgsp1_rep	CDS	23725382	23725777	.	-	0	Parent=Os06t0600700-02
Chr06	irgsp1_rep	CDS	23724360	23725172	.	-	0	Parent=Os06t0600700-02
Chr06	irgsp1_rep	three_prime_UTR	23724166	23724359	.	-	.	Parent=Os06t0600700-02
Chr06	irgsp1_rep	mRNA	23729113	23731635	.	-	.	ID=Os06t0600800-01;Name=Os06t0600800-01;Locus_id=Os06g0600800;Note=Hypothetical protein.;Transcript_evidence=AK108284 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=002-141-D04;TENOR=Os06t0600800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	23731634	23731635	.	-	.	Parent=Os06t0600800-01
Chr06	irgsp1_rep	CDS	23731247	23731633	.	-	0	Parent=Os06t0600800-01
Chr06	irgsp1_rep	three_prime_UTR	23731238	23731246	.	-	.	Parent=Os06t0600800-01
Chr06	irgsp1_rep	three_prime_UTR	23729113	23729430	.	-	.	Parent=Os06t0600800-01
Chr06	irgsp1_rep	mRNA	23732555	23734397	.	+	.	ID=Os06t0601000-01;Name=Os06t0601000-01;Locus_id=Os06g0601000;Note=Homeodomain-like containing protein.;Transcript_evidence=AK071330 (DDBJ%2C Best hit);ORF_evidence=NP_196688.2 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);NIAS_FLcDNA=J023089G15;Expression=AK071330;TENOR=Os06t0601000-01;KEGG=Os06t0601000-01
Chr06	irgsp1_rep	five_prime_UTR	23732555	23732609	.	+	.	Parent=Os06t0601000-01
Chr06	irgsp1_rep	CDS	23732610	23732753	.	+	0	Parent=Os06t0601000-01
Chr06	irgsp1_rep	CDS	23733127	23733486	.	+	0	Parent=Os06t0601000-01
Chr06	irgsp1_rep	CDS	23733655	23733954	.	+	0	Parent=Os06t0601000-01
Chr06	irgsp1_rep	CDS	23734051	23734197	.	+	0	Parent=Os06t0601000-01
Chr06	irgsp1_rep	three_prime_UTR	23734198	23734397	.	+	.	Parent=Os06t0601000-01
Chr06	irgsp1_rep	mRNA	23736841	23737876	.	+	.	ID=Os06t0601100-02;Name=Os06t0601100-02;Locus_id=Os06g0601100;Note=Conserved hypothetical protein.;Transcript_evidence=AK059761 (DDBJ%2C Best hit),AK061378 (DDBJ%2C Best hit);ORF_evidence=XP_002437241.1 (RefSeq);NIAS_FLcDNA=006-203-F06,006-304-G09;Expression=AK059761;TENOR=Os06t0601100-02;KEGG=Os06t0601100-02
Chr06	irgsp1_rep	five_prime_UTR	23736841	23736968	.	+	.	Parent=Os06t0601100-02
Chr06	irgsp1_rep	CDS	23736969	23737418	.	+	0	Parent=Os06t0601100-02
Chr06	irgsp1_rep	three_prime_UTR	23737419	23737876	.	+	.	Parent=Os06t0601100-02
Chr06	irgsp1_rep	mRNA	23773286	23776880	.	+	.	ID=Os06t0601500-01;Name=Os06t0601500-01;Locus_id=Os06g0601500;CGSNL Gene Symbol=BZIP48;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 48;Oryzabase Gene Symbol Synonym(s)=OsbZIP48%2C OsHY5%2C HY5;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 48%2C ELONGATED HYPOCOTYL 5;Note=Similar to BZIP2.;Transcript_evidence=AK241558 (DDBJ%2C Best hit);ORF_evidence=F1DQG1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);NIAS_FLcDNA=J065178J16;Oryzabase=10132;TENOR=Os06t0601500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	23773286	23773449	.	+	.	Parent=Os06t0601500-01
Chr06	irgsp1_rep	five_prime_UTR	23773619	23775721	.	+	.	Parent=Os06t0601500-01
Chr06	irgsp1_rep	CDS	23775722	23775886	.	+	0	Parent=Os06t0601500-01
Chr06	irgsp1_rep	CDS	23776187	23776249	.	+	0	Parent=Os06t0601500-01
Chr06	irgsp1_rep	three_prime_UTR	23776250	23776880	.	+	.	Parent=Os06t0601500-01
Chr06	irgsp1_rep	mRNA	23773207	23776880	.	+	.	ID=Os06t0601500-02;Name=Os06t0601500-02;Locus_id=Os06g0601500;RAP-DB Gene Symbol Synonym(s)=OsbZIP48%2C OsHY5L2;RAP-DB Gene Name Synonym(s)=b-ZIP transcription factor 48%2C LONG HYPOCOTYL 5 LIKE 2%2C HY5-like 2;CGSNL Gene Symbol=BZIP48;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 48;Oryzabase Gene Symbol Synonym(s)=OsbZIP48%2C OsHY5%2C HY5;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 48%2C ELONGATED HYPOCOTYL 5;Note=bZIP transcription factor%2C HY5 transcription factor ortholog%2C Control of plant height%2C Regulation of panicle development and seed set;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700);InterPro=Transcription factor%2C Skn-1-like%2C DNA-binding domain superfamily (IPR008917),Basic-leucine zipper domain (IPR004827);Manual Curation=June 13%2C 2019;Literature_PMID=31084872,28775143;Oryzabase=10132;Subcellular location=nucleus (GO:0005634)
Chr06	irgsp1_rep	five_prime_UTR	23773207	23773354	.	+	.	Parent=Os06t0601500-02
Chr06	irgsp1_rep	CDS	23773355	23773451	.	+	0	Parent=Os06t0601500-02
Chr06	irgsp1_rep	CDS	23773621	23773855	.	+	2	Parent=Os06t0601500-02
Chr06	irgsp1_rep	CDS	23775730	23775886	.	+	1	Parent=Os06t0601500-02
Chr06	irgsp1_rep	CDS	23776187	23776249	.	+	0	Parent=Os06t0601500-02
Chr06	irgsp1_rep	three_prime_UTR	23776250	23776880	.	+	.	Parent=Os06t0601500-02
Chr06	irgsp1_rep	mRNA	23777893	23780396	.	+	.	ID=Os06t0601600-00;Name=Os06t0601600-00;Locus_id=Os06g0601600;CGSNL Gene Symbol=CESA11;CGSNL Gene Name=CELLULOSE SYNTHASE A11;Oryzabase Gene Symbol Synonym(s)=OsCesA11%2C OsCESA11%2C OsCLD1%2C CLD1;Oryzabase Gene Name Synonym(s)=Cellulose synthase A catalytic subunit 11 [UDP-forming]%2C Cellulose synthase A catalytic subunit 11;Note=Cellulose synthase domain containing protein.;Transcript_evidence=BT066155 (DDBJ);ORF_evidence=A3BDC1 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150);Oryzabase=9060;TENOR=Os06t0601600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	23777893	23778191	.	+	0	Parent=Os06t0601600-00
Chr06	irgsp1_rep	CDS	23778265	23778610	.	+	1	Parent=Os06t0601600-00
Chr06	irgsp1_rep	CDS	23778683	23778820	.	+	0	Parent=Os06t0601600-00
Chr06	irgsp1_rep	CDS	23778912	23779037	.	+	0	Parent=Os06t0601600-00
Chr06	irgsp1_rep	CDS	23779116	23779324	.	+	0	Parent=Os06t0601600-00
Chr06	irgsp1_rep	CDS	23779647	23780103	.	+	1	Parent=Os06t0601600-00
Chr06	irgsp1_rep	three_prime_UTR	23780104	23780396	.	+	.	Parent=Os06t0601600-00
Chr06	irgsp1_rep	mRNA	23781918	23787074	.	-	.	ID=Os06t0602000-00;Name=Os06t0602000-00;Locus_id=Os06g0602000;Note=Similar to RALF.;Transcript_evidence=EU949081 (DDBJ);ORF_evidence=NP_001147163.1 (RefSeq);TENOR=Os06t0602000-00
Chr06	irgsp1_rep	CDS	23786756	23787074	.	-	0	Parent=Os06t0602000-00
Chr06	irgsp1_rep	CDS	23782044	23782060	.	-	2	Parent=Os06t0602000-00
Chr06	irgsp1_rep	three_prime_UTR	23781918	23782043	.	-	.	Parent=Os06t0602000-00
Chr06	irgsp1_rep	mRNA	23806008	23811036	.	+	.	ID=Os06t0602400-01;Name=Os06t0602400-01;Locus_id=Os06g0602400;CGSNL Gene Symbol=NRFG4;CGSNL Gene Name=NEO-TETRAPLOID RICE FERTILITY RELATED GENE 4;Oryzabase Gene Symbol Synonym(s)=OsRH52A%2C RH52A%2C OsNRFG4;Oryzabase Gene Name Synonym(s)=RNA helicase 52A%2C neo-tetraploid rice fertility related gene 4;Note=Similar to DEAD-box protein 3%2C X-Chromosomal (DEAD-box RNA helicase DEAD3) (mDEAD3) (Embryonic RNA helicase) (D1PAS1 related sequence 2).;Transcript_evidence=AK106474 (DDBJ%2C Best hit);ORF_evidence=Q75HJ0 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=RNA helicase%2C ATP-dependent%2C DEAD-box%2C conserved site (IPR000629),Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001);NIAS_FLcDNA=002-104-C03;Oryzabase=19158;Expression=AK106474;TENOR=Os06t0602400-01;KEGG=Os06t0602400-01 (EC:3.6.4.13)
Chr06	irgsp1_rep	five_prime_UTR	23806008	23806009	.	+	.	Parent=Os06t0602400-01
Chr06	irgsp1_rep	CDS	23806010	23806204	.	+	0	Parent=Os06t0602400-01
Chr06	irgsp1_rep	CDS	23808012	23808095	.	+	0	Parent=Os06t0602400-01
Chr06	irgsp1_rep	CDS	23808401	23808643	.	+	0	Parent=Os06t0602400-01
Chr06	irgsp1_rep	CDS	23809000	23809167	.	+	0	Parent=Os06t0602400-01
Chr06	irgsp1_rep	CDS	23809260	23809379	.	+	0	Parent=Os06t0602400-01
Chr06	irgsp1_rep	CDS	23810024	23810668	.	+	0	Parent=Os06t0602400-01
Chr06	irgsp1_rep	three_prime_UTR	23810669	23811036	.	+	.	Parent=Os06t0602400-01
Chr06	irgsp1_rep	mRNA	23812382	23815104	.	-	.	ID=Os06t0602500-01;Name=Os06t0602500-01;Locus_id=Os06g0602500;CGSNL Gene Symbol=NRFG6;CGSNL Gene Name=NEO-TETRAPLOID RICE FERTILITY RELATED GENE 6;Oryzabase Gene Symbol Synonym(s)=OsNRFG6;Oryzabase Gene Name Synonym(s)=neo-tetraploid rice fertility related gene 6;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK111737 (DDBJ%2C Best hit);ORF_evidence=A2YER5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),S-receptor-like serine/threonine-protein kinase (IPR024171);NIAS_FLcDNA=J023047K02;Oryzabase=23707;Expression=AK111737;TENOR=Os06t0602500-01;KEGG=Os06t0602500-01
Chr06	irgsp1_rep	five_prime_UTR	23815042	23815104	.	-	.	Parent=Os06t0602500-01
Chr06	irgsp1_rep	CDS	23812600	23815041	.	-	0	Parent=Os06t0602500-01
Chr06	irgsp1_rep	three_prime_UTR	23812382	23812599	.	-	.	Parent=Os06t0602500-01
Chr06	irgsp1_rep	mRNA	23821410	23823279	.	+	.	ID=Os06t0602600-01;Name=Os06t0602600-01;Locus_id=Os06g0602600;CGSNL Gene Symbol=ALBA6;CGSNL Gene Name=ACETYLATION LOWERS BINDING AFFINITY 6;Oryzabase Gene Symbol Synonym(s)=OsAlba6%2C Alba6;Oryzabase Gene Name Synonym(s)=acetylation lowers binding affinity protein 6%2C acetylation lowers binding affinity 6%2C Alba family protein 6;Note=Alba%2C DNA/RNA-binding protein family protein.;Transcript_evidence=AK121619 (DDBJ%2C Best hit);ORF_evidence=XP_002879480.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=DNA/RNA-binding protein Alba-like (IPR002775),Uncharacterised conserved protein UCP030333%2C DNA/RNA-binding Alba-related (IPR014560);NIAS_FLcDNA=J033044O03;Oryzabase=22406;Expression=AK121619;TENOR=Os06t0602600-01;KEGG=Os06t0602600-01
Chr06	irgsp1_rep	five_prime_UTR	23821410	23821587	.	+	.	Parent=Os06t0602600-01
Chr06	irgsp1_rep	CDS	23821588	23821704	.	+	0	Parent=Os06t0602600-01
Chr06	irgsp1_rep	CDS	23822118	23822166	.	+	0	Parent=Os06t0602600-01
Chr06	irgsp1_rep	CDS	23822708	23822770	.	+	2	Parent=Os06t0602600-01
Chr06	irgsp1_rep	CDS	23822868	23822932	.	+	2	Parent=Os06t0602600-01
Chr06	irgsp1_rep	CDS	23823015	23823119	.	+	0	Parent=Os06t0602600-01
Chr06	irgsp1_rep	three_prime_UTR	23823120	23823279	.	+	.	Parent=Os06t0602600-01
Chr06	irgsp1_rep	mRNA	23823461	23827296	.	-	.	ID=Os06t0602700-01;Name=Os06t0602700-01;Locus_id=Os06g0602700;RAP-DB Gene Symbol Synonym(s)=BT1-3%2C OsBT1-3;RAP-DB Gene Name Synonym(s)=BRITTLE 1-3%2C Brittle-1-3;CGSNL Gene Symbol=BT1-3;CGSNL Gene Name=BRITTLE 1-3;Oryzabase Gene Symbol Synonym(s)=OsBT1-3%2C SLA;Oryzabase Gene Name Synonym(s)=Brittle-1-3%2C seedling leaf albino;Note=Plastid adenine nucleotide uniporter%2C Chloroplast development at early leaf stage;Transcript_evidence=Inferred from literature;ORF_evidence=A0A0P0WYD6;GO=Biological Process: transmembrane transport (GO:0055085);InterPro=Mitochondrial carrier protein (IPR002067),Mitochondrial carrier domain (IPR023395),Mitochondrial substrate/solute carrier (IPR018108);Manual Curation=February 6%2C 2017;Literature_PMID=28134341;Oryzabase=8714;TENOR=Os06t0602700-00;Subcellular location=chloroplast (GO:0009507)
Chr06	irgsp1_rep	five_prime_UTR	23826991	23827296	.	-	.	Parent=Os06t0602700-01
Chr06	irgsp1_rep	five_prime_UTR	23826292	23826348	.	-	.	Parent=Os06t0602700-01
Chr06	irgsp1_rep	CDS	23825659	23826291	.	-	0	Parent=Os06t0602700-01
Chr06	irgsp1_rep	CDS	23824476	23824637	.	-	0	Parent=Os06t0602700-01
Chr06	irgsp1_rep	CDS	23823925	23824401	.	-	0	Parent=Os06t0602700-01
Chr06	irgsp1_rep	three_prime_UTR	23823461	23823924	.	-	.	Parent=Os06t0602700-01
Chr06	irgsp1_rep	mRNA	23844798	23847039	.	+	.	ID=Os06t0602800-01;Name=Os06t0602800-01;Locus_id=Os06g0602800;Note=Similar to Acetylglucosaminyltransferase.;Transcript_evidence=AK070134 (DDBJ%2C Best hit);ORF_evidence=B4F927 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: acetylglucosaminyltransferase activity (GO:0008375);InterPro=Glycosyl transferase%2C family 14 (IPR003406);NIAS_FLcDNA=J023043B05;Oryzabase=15266;TENOR=Os06t0602800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	23844798	23844798	.	+	.	Parent=Os06t0602800-01
Chr06	irgsp1_rep	CDS	23844799	23844913	.	+	0	Parent=Os06t0602800-01
Chr06	irgsp1_rep	CDS	23846077	23846591	.	+	2	Parent=Os06t0602800-01
Chr06	irgsp1_rep	three_prime_UTR	23846592	23847039	.	+	.	Parent=Os06t0602800-01
Chr06	irgsp1_rep	mRNA	23847493	23851042	.	-	.	ID=Os06t0602900-01;Name=Os06t0602900-01;Locus_id=Os06g0602900;Note=Similar to NADP-dependent oxidoreductase P2.;Transcript_evidence=AK243009 (DDBJ%2C Best hit);ORF_evidence=NP_001147559.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),NAD(P)-binding domain (IPR016040),Polyketide synthase%2C enoylreductase (IPR020843);NIAS_FLcDNA=J090097J02;TENOR=Os06t0602900-01;KEGG=Os06t0602900-01 (EC:1.3.1.74)
Chr06	irgsp1_rep	five_prime_UTR	23850964	23851042	.	-	.	Parent=Os06t0602900-01
Chr06	irgsp1_rep	CDS	23850745	23850963	.	-	0	Parent=Os06t0602900-01
Chr06	irgsp1_rep	CDS	23850473	23850659	.	-	0	Parent=Os06t0602900-01
Chr06	irgsp1_rep	CDS	23850189	23850355	.	-	2	Parent=Os06t0602900-01
Chr06	irgsp1_rep	CDS	23848456	23848538	.	-	0	Parent=Os06t0602900-01
Chr06	irgsp1_rep	CDS	23847661	23848033	.	-	1	Parent=Os06t0602900-01
Chr06	irgsp1_rep	three_prime_UTR	23847493	23847660	.	-	.	Parent=Os06t0602900-01
Chr06	irgsp1_rep	mRNA	23847674	23850849	.	+	.	ID=Os06t0602950-00;Name=Os06t0602950-00;Locus_id=Os06g0602950;Note=Hypothetical gene.;Transcript_evidence=BT061853 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0602950-00;KEGG=Os06t0602950-00
Chr06	irgsp1_rep	five_prime_UTR	23847674	23848009	.	+	.	Parent=Os06t0602950-00
Chr06	irgsp1_rep	CDS	23848010	23848061	.	+	0	Parent=Os06t0602950-00
Chr06	irgsp1_rep	CDS	23850142	23850416	.	+	2	Parent=Os06t0602950-00
Chr06	irgsp1_rep	three_prime_UTR	23850417	23850558	.	+	.	Parent=Os06t0602950-00
Chr06	irgsp1_rep	three_prime_UTR	23850737	23850849	.	+	.	Parent=Os06t0602950-00
Chr06	irgsp1_rep	mRNA	23853783	23858023	.	-	.	ID=Os06t0603000-01;Name=Os06t0603000-01;Locus_id=Os06g0603000;RAP-DB Gene Symbol Synonym(s)=SE5%2C Se5%2C OsHO1%2C OsHO-1%2C OsHY1%2C HO-1%2C HO1%2C OsSE5%2C PE-1;RAP-DB Gene Name Synonym(s)=PHOTOSENSITIVITY 5%2C Photosensitivity5%2C Photosensitivity 5%2C Photoperiod-sensitivity-5%2C heme oxygenase 1%2C heme oxygenase-1%2C haem oxygenase-1%2C photoperiod sensitivity5;CGSNL Gene Symbol=SE5;CGSNL Gene Name=PHOTOSENSITIVITY 5;Oryzabase Gene Symbol Synonym(s)=Se5%2C OsHO1%2C OsHO-1%2C OsHY1%2C HO-1%2C HO1%2C OsSE5%2C YGL2%2C YGL2/HO1;Oryzabase Gene Name Synonym(s)=Photosensitivity5%2C Photosensitivity 5%2C Photoperiod-sensitivity-5%2C heme oxygenase 1%2C heme oxygenase-1%2C haem oxygenase-1%2C photoperiod sensitivity5%2C PHOTOPERIOD SENSITIVITY 5%2C YELLOW-GREEN LEAF2%2C YELLOW GREEN LEAF 2;Note=Heme-oxygenase%2C PhytoChrome Chromophore biosynthesis%2C Nitric oxide- and auxin-induced lateral root formation;Transcript_evidence=AK104955 (Genbank),AK068856 (Genbank),EU781632 (Genbank);ORF_evidence=Q69XJ4 (UniProt);GO=Biological Process: heme oxidation (GO:0006788),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: heme oxygenase (decyclizing) activity (GO:0004392);InterPro=Haem oxygenase (IPR002051),Haem oxygenase-like (IPR016053),Haem oxygenase-like%2C multi-helical (IPR016084),Haem oxygenase (decyclizing)%2C plant (IPR016951);Manual Curation=July 2%2C 2019;Literature_PMID=10849355,12154129,22262313,31244201;Oryzabase=732;TENOR=Os06t0603000-01
Chr06	irgsp1_rep	five_prime_UTR	23857725	23858023	.	-	.	Parent=Os06t0603000-01
Chr06	irgsp1_rep	CDS	23857280	23857724	.	-	0	Parent=Os06t0603000-01
Chr06	irgsp1_rep	CDS	23854797	23855020	.	-	2	Parent=Os06t0603000-01
Chr06	irgsp1_rep	CDS	23854151	23854258	.	-	0	Parent=Os06t0603000-01
Chr06	irgsp1_rep	CDS	23853944	23854036	.	-	0	Parent=Os06t0603000-01
Chr06	irgsp1_rep	three_prime_UTR	23853783	23853943	.	-	.	Parent=Os06t0603000-01
Chr06	irgsp1_rep	mRNA	23863461	23864518	.	-	.	ID=Os06t0603300-00;Name=Os06t0603300-00;Locus_id=Os06g0603300;Oryzabase Gene Symbol Synonym(s)=OsVQ23;Oryzabase Gene Name Synonym(s)=VQ motif-containing protein 23;Note=VQ domain containing protein.;Transcript_evidence=CT836271 (DDBJ%2C Best hit);ORF_evidence=NP_001174890.1 (RefSeq);InterPro=VQ (IPR008889);Oryzabase=13639;TENOR=Os06t0603300-00;KEGG=Os06t0603300-00
Chr06	irgsp1_rep	five_prime_UTR	23864428	23864518	.	-	.	Parent=Os06t0603300-00
Chr06	irgsp1_rep	CDS	23863813	23864427	.	-	0	Parent=Os06t0603300-00
Chr06	irgsp1_rep	three_prime_UTR	23863461	23863812	.	-	.	Parent=Os06t0603300-00
Chr06	irgsp1_rep	mRNA	23870695	23874725	.	-	.	ID=Os06t0603400-01;Name=Os06t0603400-01;Locus_id=Os06g0603400;Note=Similar to DNA-directed RNA polymerase III 39 kDa polypeptide (EC 2.7.7.6) (RNA polymerase III C39 subunit).;Transcript_evidence=AK106905 (DDBJ%2C Best hit);ORF_evidence=NP_001151058.1 (RefSeq);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899);InterPro=RNA polymerase Rpc34 (IPR007832),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),RNA polymerase Rpc34-like (IPR016049);NIAS_FLcDNA=002-118-H12;Expression=AK106905;TENOR=Os06t0603400-01;KEGG=Os06t0603400-01 (EC:2.7.7.6)
Chr06	irgsp1_rep	five_prime_UTR	23874650	23874725	.	-	.	Parent=Os06t0603400-01
Chr06	irgsp1_rep	CDS	23874379	23874649	.	-	0	Parent=Os06t0603400-01
Chr06	irgsp1_rep	CDS	23873867	23874036	.	-	2	Parent=Os06t0603400-01
Chr06	irgsp1_rep	three_prime_UTR	23873864	23873866	.	-	.	Parent=Os06t0603400-01
Chr06	irgsp1_rep	three_prime_UTR	23871368	23871980	.	-	.	Parent=Os06t0603400-01
Chr06	irgsp1_rep	three_prime_UTR	23871147	23871296	.	-	.	Parent=Os06t0603400-01
Chr06	irgsp1_rep	three_prime_UTR	23870695	23871046	.	-	.	Parent=Os06t0603400-01
Chr06	irgsp1_rep	mRNA	23873628	23874723	.	-	.	ID=Os06t0603400-02;Name=Os06t0603400-02;Locus_id=Os06g0603400;Note=Similar to RNA polymerase Rpc34 subunit family protein.;Transcript_evidence=AK102325 (DDBJ%2C Best hit),AK060002 (DDBJ%2C Best hit);ORF_evidence=NP_001151058.1 (RefSeq);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899);InterPro=RNA polymerase Rpc34 (IPR007832),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),RNA polymerase Rpc34-like (IPR016049);NIAS_FLcDNA=J033090K06,006-301-H10;Expression=AK102325;TENOR=Os06t0603400-02;KEGG=Os06t0603400-02 (EC:2.7.7.6)
Chr06	irgsp1_rep	five_prime_UTR	23874650	23874723	.	-	.	Parent=Os06t0603400-02
Chr06	irgsp1_rep	CDS	23873867	23874649	.	-	0	Parent=Os06t0603400-02
Chr06	irgsp1_rep	three_prime_UTR	23873628	23873866	.	-	.	Parent=Os06t0603400-02
Chr06	irgsp1_rep	mRNA	23875544	23879965	.	-	.	ID=Os06t0603600-01;Name=Os06t0603600-01;Locus_id=Os06g0603600;RAP-DB Gene Symbol Synonym(s)=OsSPX1%2C SPX1;RAP-DB Gene Name Synonym(s)=SPX (SYG/PHO81/XPR1) domain gene 1;CGSNL Gene Symbol=SPX1;CGSNL Gene Name=SPX DOMAIN PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsSPX1;Oryzabase Gene Name Synonym(s)=SPX (SYG/PHO81/XPR1) domain gene 1%2C SPX domain protein 1;Note=SPX domain-containing protein%2C Phosphate (Pi) homeostasis%2C Negative regulation of leaf inclination;Transcript_evidence=AK072067 (Genbank);ORF_evidence=Q69XJ0 (UniProt);InterPro=SPX%2C N-terminal (IPR004331);NIAS_FLcDNA=J013114F06;Manual Curation=May 22%2C 2018;Literature_PMID=18315545,19000161,20149131,29610209;Oryzabase=9863;TENOR=Os06t0603600-01;KEGG=Os06t0603600-01
Chr06	irgsp1_rep	five_prime_UTR	23879793	23879965	.	-	.	Parent=Os06t0603600-01
Chr06	irgsp1_rep	CDS	23879496	23879792	.	-	0	Parent=Os06t0603600-01
Chr06	irgsp1_rep	CDS	23879262	23879394	.	-	0	Parent=Os06t0603600-01
Chr06	irgsp1_rep	CDS	23875762	23876219	.	-	2	Parent=Os06t0603600-01
Chr06	irgsp1_rep	three_prime_UTR	23875544	23875761	.	-	.	Parent=Os06t0603600-01
Chr06	irgsp1_rep	mRNA	23875437	23879853	.	-	.	ID=Os06t0603600-02;Name=Os06t0603600-02;Locus_id=Os06g0603600;RAP-DB Gene Symbol Synonym(s)=OsSPX1;RAP-DB Gene Name Synonym(s)=Oryza sativa SYG/PHO8/XPR1 (SPX) domain gene;CGSNL Gene Symbol=SPX1;CGSNL Gene Name=SPX DOMAIN PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsSPX1;Oryzabase Gene Name Synonym(s)=SPX (SYG/PHO81/XPR1) domain gene 1%2C SPX domain protein 1;Note=SPX domain-containing protein%2C Phosphate (Pi) homeostasis;Transcript_evidence=AK063544 (Genbank);ORF_evidence=Q69XJ0 (UniProt);InterPro=SPX%2C N-terminal (IPR004331);NIAS_FLcDNA=001-117-D01;Manual Curation=June 14%2C 2010;Literature_PMID=18315545,19000161,20149131;Oryzabase=9863;TENOR=Os06t0603600-02;KEGG=Os06t0603600-02
Chr06	irgsp1_rep	five_prime_UTR	23879793	23879853	.	-	.	Parent=Os06t0603600-02
Chr06	irgsp1_rep	CDS	23879496	23879792	.	-	0	Parent=Os06t0603600-02
Chr06	irgsp1_rep	CDS	23879262	23879394	.	-	0	Parent=Os06t0603600-02
Chr06	irgsp1_rep	CDS	23875762	23876219	.	-	2	Parent=Os06t0603600-02
Chr06	irgsp1_rep	three_prime_UTR	23875437	23875761	.	-	.	Parent=Os06t0603600-02
Chr06	irgsp1_rep	mRNA	23876078	23879793	.	+	.	ID=Os06t0603800-00;Name=Os06t0603800-00;Locus_id=Os06g0603800;Note=Hypothetical protein.;Transcript_evidence=EU963876 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0603800-00
Chr06	irgsp1_rep	five_prime_UTR	23876078	23876221	.	+	.	Parent=Os06t0603800-00
Chr06	irgsp1_rep	five_prime_UTR	23879270	23879307	.	+	.	Parent=Os06t0603800-00
Chr06	irgsp1_rep	CDS	23879308	23879371	.	+	0	Parent=Os06t0603800-00
Chr06	irgsp1_rep	CDS	23879477	23879644	.	+	2	Parent=Os06t0603800-00
Chr06	irgsp1_rep	CDS	23879700	23879710	.	+	2	Parent=Os06t0603800-00
Chr06	irgsp1_rep	three_prime_UTR	23879711	23879793	.	+	.	Parent=Os06t0603800-00
Chr06	irgsp1_rep	mRNA	23898257	23899819	.	-	.	ID=Os06t0604000-01;Name=Os06t0604000-01;Locus_id=Os06g0604000;CGSNL Gene Symbol=ERF1;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 1;Oryzabase Gene Symbol Synonym(s)=Os06ERF%2C OsWR2%2C WR2%2C OsERF#001%2C OsERF001%2C OsERF1%2C AP2/EREBP#057%2C AP2/EREBP57%2C RD1%2C OsSHN%2C SHN;Oryzabase Gene Name Synonym(s)=ethylene response factor on Chromosome 6%2C rice wax synthesis regulatory gene 2%2C wax synthesis regulator 2%2C Wax Synthesis Regulatory 2%2C ethylene response factor 1%2C APETALA2/ethylene-responsive element binding protein 57%2C Rice Drought-responsive gene 1%2C SHINE;Note=Similar to Ethylene response factor 1.;Transcript_evidence=AK066422 (DDBJ%2C Best hit);ORF_evidence=A2YES4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J013063M10;Oryzabase=9401;Expression=AK066422;TENOR=Os06t0604000-01;KEGG=Os06t0604000-01
Chr06	irgsp1_rep	five_prime_UTR	23899588	23899819	.	-	.	Parent=Os06t0604000-01
Chr06	irgsp1_rep	CDS	23899505	23899587	.	-	0	Parent=Os06t0604000-01
Chr06	irgsp1_rep	CDS	23899041	23899272	.	-	1	Parent=Os06t0604000-01
Chr06	irgsp1_rep	CDS	23898896	23898913	.	-	0	Parent=Os06t0604000-01
Chr06	irgsp1_rep	three_prime_UTR	23898257	23898895	.	-	.	Parent=Os06t0604000-01
Chr06	irgsp1_rep	mRNA	23898257	23899816	.	-	.	ID=Os06t0604000-02;Name=Os06t0604000-02;Locus_id=Os06g0604000;CGSNL Gene Symbol=ERF1;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 1;Oryzabase Gene Symbol Synonym(s)=Os06ERF%2C OsWR2%2C WR2%2C OsERF#001%2C OsERF001%2C OsERF1%2C AP2/EREBP#057%2C AP2/EREBP57%2C RD1%2C OsSHN%2C SHN;Oryzabase Gene Name Synonym(s)=ethylene response factor on Chromosome 6%2C rice wax synthesis regulatory gene 2%2C wax synthesis regulator 2%2C Wax Synthesis Regulatory 2%2C ethylene response factor 1%2C APETALA2/ethylene-responsive element binding protein 57%2C Rice Drought-responsive gene 1%2C SHINE;Note=Ethylene response factor 3.;Transcript_evidence=AK061163 (DDBJ%2C Best hit);ORF_evidence=A2YES4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=006-209-A04;Oryzabase=9401;Expression=AK061163;TENOR=Os06t0604000-02;KEGG=Os06t0604000-02
Chr06	irgsp1_rep	five_prime_UTR	23899588	23899816	.	-	.	Parent=Os06t0604000-02
Chr06	irgsp1_rep	CDS	23899505	23899587	.	-	0	Parent=Os06t0604000-02
Chr06	irgsp1_rep	CDS	23898624	23899272	.	-	1	Parent=Os06t0604000-02
Chr06	irgsp1_rep	three_prime_UTR	23898257	23898623	.	-	.	Parent=Os06t0604000-02
Chr06	irgsp1_rep	mRNA	23908918	23913796	.	-	.	ID=Os06t0604200-02;Name=Os06t0604200-02;Locus_id=Os06g0604200;RAP-DB Gene Symbol Synonym(s)=OsPLD&alpha%3B4%2C OsPLDa4%2C OsPLDalpha4%2C PLDalpha4;RAP-DB Gene Name Synonym(s)=PHOSPHOLIPASE D ALPHA 4%2C Phospholipase D &alpha%3B4%2C Phospholipase D a4%2C Phospholipase D alpha 4;CGSNL Gene Symbol=PLDalpha4;CGSNL Gene Name=PHOSPHOLIPASE D ALPHA 4;Oryzabase Gene Symbol Synonym(s)=OsPLDalpha4%2C RPLD3%2C OsPLDeta2;Oryzabase Gene Name Synonym(s)=Phospholipase D alpha 4%2C phospholipase Dalpha4%2C phospholipase D eta 2;Note=Chloroplast-localized phospholipase D%2C Herbivore defense;Transcript_evidence=AK100278,AK121264;ORF_evidence=Q69X22;GO=Biological Process: phosphatidylcholine metabolic process (GO:0046470),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phospholipase D activity (GO:0004630),Molecular Function: calcium ion binding (GO:0005509),Cellular Component: membrane (GO:0016020);InterPro=Phospholipase D family (IPR015679),Phospholipase D%2C plant (IPR011402),C2 domain (IPR000008),Phospholipase D/Transphosphatidylase (IPR001736),Phospholipase D%2C C-terminal (IPR024632);NIAS_FLcDNA=J023073L15, J023105D06;Manual Curation=May 10%2C 2017;Literature_PMID=21984727;Oryzabase=2953;Expression=AK100278;TENOR=Os06t0604200-02;KEGG=Os06t0604200-02 (EC:3.1.4.4)
Chr06	irgsp1_rep	five_prime_UTR	23913723	23913796	.	-	.	Parent=Os06t0604200-02
Chr06	irgsp1_rep	CDS	23913612	23913722	.	-	0	Parent=Os06t0604200-02
Chr06	irgsp1_rep	CDS	23911572	23913513	.	-	0	Parent=Os06t0604200-02
Chr06	irgsp1_rep	CDS	23909165	23909610	.	-	2	Parent=Os06t0604200-02
Chr06	irgsp1_rep	three_prime_UTR	23908918	23909164	.	-	.	Parent=Os06t0604200-02
Chr06	irgsp1_rep	mRNA	23921940	23924919	.	+	.	ID=Os06t0604300-01;Name=Os06t0604300-01;Locus_id=Os06g0604300;RAP-DB Gene Symbol Synonym(s)=OsPLD&alpha%3B5%2C OsPLDa5%2C OsPLDalpha5%2C PLDalpha5;RAP-DB Gene Name Synonym(s)=PHOSPHOLIPASE D ALPHA 5%2C Phospholipase D &alpha%3B5%2C Phospholipase D a5%2C Phospholipase D alpha 5;CGSNL Gene Symbol=PLDalpha5;CGSNL Gene Name=PHOSPHOLIPASE D ALPHA 5;Oryzabase Gene Symbol Synonym(s)=OsPLDalpha5%2C RPLD4%2C OsPLDeta3;Oryzabase Gene Name Synonym(s)=Phospholipase D alpha 5%2C phospholipase Dalpha5%2C phospholipase D eta 3;Note=Chloroplast-localized phospholipase D%2C Herbivore defense;Transcript_evidence=AK119861;ORF_evidence=Q69X21;GO=Biological Process: phosphatidylcholine metabolic process (GO:0046470),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phospholipase D activity (GO:0004630),Molecular Function: calcium ion binding (GO:0005509),Cellular Component: membrane (GO:0016020);InterPro=Phospholipase D family (IPR015679),Phospholipase D%2C plant (IPR011402),C2 domain (IPR000008),Phospholipase D/Transphosphatidylase (IPR001736),Phospholipase D%2C C-terminal (IPR024632);NIAS_FLcDNA=002-178-H08;Manual Curation=May 10%2C 2017;Literature_PMID=21984727;Oryzabase=2954;Expression=AK119861;TENOR=Os06t0604300-01;KEGG=Os06t0604300-01 (EC:3.1.4.4)
Chr06	irgsp1_rep	five_prime_UTR	23921940	23922018	.	+	.	Parent=Os06t0604300-01
Chr06	irgsp1_rep	CDS	23922019	23922126	.	+	0	Parent=Os06t0604300-01
Chr06	irgsp1_rep	CDS	23922235	23924209	.	+	0	Parent=Os06t0604300-01
Chr06	irgsp1_rep	CDS	23924299	23924744	.	+	2	Parent=Os06t0604300-01
Chr06	irgsp1_rep	three_prime_UTR	23924745	23924919	.	+	.	Parent=Os06t0604300-01
Chr06	irgsp1_rep	mRNA	23928713	23932370	.	+	.	ID=Os06t0604400-01;Name=Os06t0604400-01;Locus_id=Os06g0604400;RAP-DB Gene Symbol Synonym(s)=OsPLD&alpha%3B3;RAP-DB Gene Name Synonym(s)=Phospholipase D alpha 3;CGSNL Gene Symbol=PLDALPHA3;CGSNL Gene Name=PHOSPHOLIPASE D ALPHA 3;Oryzabase Gene Symbol Synonym(s)=OsPLDalpha3%2C RPLD2%2C PLDalpha3%2C OsPLDeta1%2C PLD2;Oryzabase Gene Name Synonym(s)=Phospholipase D alpha 3%2C Phospholipase D alpha 2%2C PLD alpha 2%2C PLD2%2C phospholipase Dalpha3%2C phospholipase eta 1;Note=Phospholipase D;Transcript_evidence=AK072121;ORF_evidence=P93844;GO=Biological Process: phosphatidylcholine metabolic process (GO:0046470),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phospholipase D activity (GO:0004630),Molecular Function: calcium ion binding (GO:0005509),Cellular Component: membrane (GO:0016020);InterPro=C2 domain superfamily (IPR035892),Phospholipase D%2C plant (IPR011402),C2 domain (IPR000008),Phospholipase D/Transphosphatidylase (IPR001736),Phospholipase D%2C C-terminal (IPR024632);NIAS_FLcDNA=J013122J23;Manual Curation=July 7%2C 2020;Literature_PMID=22751320;Oryzabase=2952;Expression=AK072121;TENOR=Os06t0604400-01;KEGG=Os06t0604400-01 (EC:3.1.4.4)
Chr06	irgsp1_rep	five_prime_UTR	23928713	23928849	.	+	.	Parent=Os06t0604400-01
Chr06	irgsp1_rep	CDS	23928850	23928957	.	+	0	Parent=Os06t0604400-01
Chr06	irgsp1_rep	CDS	23929089	23931000	.	+	0	Parent=Os06t0604400-01
Chr06	irgsp1_rep	CDS	23931384	23931817	.	+	2	Parent=Os06t0604400-01
Chr06	irgsp1_rep	three_prime_UTR	23931818	23932370	.	+	.	Parent=Os06t0604400-01
Chr06	irgsp1_rep	mRNA	23935983	23940521	.	+	.	ID=Os06t0604500-01;Name=Os06t0604500-01;Locus_id=Os06g0604500;Note=EF-Hand type domain containing protein.;Transcript_evidence=AK070190 (DDBJ%2C Best hit),AK072098 (DDBJ%2C Best hit);ORF_evidence=B6TXR3 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial inner membrane (GO:0005743),Molecular Function: binding (GO:0005488),Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),Mitochondrial carrier protein (IPR002067),EF-hand-like domain (IPR011992),Mitochondrial substrate/solute carrier (IPR018108),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J023042A05,J013118F23;Expression=AK070190;TENOR=Os06t0604500-01;KEGG=Os06t0604500-01
Chr06	irgsp1_rep	five_prime_UTR	23935983	23936088	.	+	.	Parent=Os06t0604500-01
Chr06	irgsp1_rep	CDS	23936089	23936566	.	+	0	Parent=Os06t0604500-01
Chr06	irgsp1_rep	CDS	23938820	23939605	.	+	2	Parent=Os06t0604500-01
Chr06	irgsp1_rep	CDS	23939697	23939787	.	+	2	Parent=Os06t0604500-01
Chr06	irgsp1_rep	CDS	23939866	23940058	.	+	1	Parent=Os06t0604500-01
Chr06	irgsp1_rep	three_prime_UTR	23940059	23940521	.	+	.	Parent=Os06t0604500-01
Chr06	irgsp1_rep	mRNA	23939261	23942143	.	+	.	ID=Os06t0604500-02;Name=Os06t0604500-02;Locus_id=Os06g0604500;Note=Hypothetical conserved gene.;Transcript_evidence=AK059035 (DDBJ%2C Best hit);ORF_evidence=B8B4D3 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial inner membrane (GO:0005743),Molecular Function: binding (GO:0005488);InterPro=Mitochondrial carrier protein (IPR002067),Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=001-021-C09;Expression=AK059035;TENOR=Os06t0604500-02;KEGG=Os06t0604500-02
Chr06	irgsp1_rep	five_prime_UTR	23939261	23939262	.	+	.	Parent=Os06t0604500-02
Chr06	irgsp1_rep	CDS	23939263	23939605	.	+	0	Parent=Os06t0604500-02
Chr06	irgsp1_rep	CDS	23939697	23939787	.	+	2	Parent=Os06t0604500-02
Chr06	irgsp1_rep	CDS	23939866	23940058	.	+	1	Parent=Os06t0604500-02
Chr06	irgsp1_rep	three_prime_UTR	23940059	23940280	.	+	.	Parent=Os06t0604500-02
Chr06	irgsp1_rep	three_prime_UTR	23941937	23942143	.	+	.	Parent=Os06t0604500-02
Chr06	irgsp1_rep	mRNA	23949819	23950657	.	+	.	ID=Os06t0604600-01;Name=Os06t0604600-01;Locus_id=Os06g0604600;Note=Conserved hypothetical protein.;Transcript_evidence=AK069255 (DDBJ%2C Best hit);ORF_evidence=A2YET2 (UniProt);NIAS_FLcDNA=J023016C19;Expression=AK069255;TENOR=Os06t0604600-01;KEGG=Os06t0604600-01
Chr06	irgsp1_rep	five_prime_UTR	23949819	23949928	.	+	.	Parent=Os06t0604600-01
Chr06	irgsp1_rep	CDS	23949929	23950097	.	+	0	Parent=Os06t0604600-01
Chr06	irgsp1_rep	CDS	23950213	23950439	.	+	2	Parent=Os06t0604600-01
Chr06	irgsp1_rep	three_prime_UTR	23950440	23950657	.	+	.	Parent=Os06t0604600-01
Chr06	irgsp1_rep	mRNA	24005166	24012308	.	-	.	ID=Os06t0605600-01;Name=Os06t0605600-01;Locus_id=Os06g0605600;RAP-DB Gene Symbol Synonym(s)=OsGAMYBL1;RAP-DB Gene Name Synonym(s)=GAMYB-like1%2C OsGAMYB-like1%2C GAMYB-LIKE 1;CGSNL Gene Symbol=GAMYBL1;CGSNL Gene Name=GAMYB-LIKE 1;Oryzabase Gene Symbol Synonym(s)=OsGAMYBL1;Oryzabase Gene Name Synonym(s)=GAMYB-like1;Note=GAMYB-like protein%2C Flower development and stem elongation at the reproductive stage;Transcript_evidence=AK106613 (truncated),AB212075;ORF_evidence=Q3C253;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeobox-like domain superfamily (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930);NIAS_FLcDNA=002-112-G09 (truncated);Manual Curation=November 27%2C 2017;Literature_PMID=29162059,16792694;Oryzabase=8710;TENOR=Os06t0605600-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	24012144	24012308	.	-	0	Parent=Os06t0605600-01
Chr06	irgsp1_rep	CDS	24011665	24011800	.	-	0	Parent=Os06t0605600-01
Chr06	irgsp1_rep	CDS	24010655	24010791	.	-	2	Parent=Os06t0605600-01
Chr06	irgsp1_rep	CDS	24009957	24010024	.	-	0	Parent=Os06t0605600-01
Chr06	irgsp1_rep	CDS	24009317	24009800	.	-	1	Parent=Os06t0605600-01
Chr06	irgsp1_rep	CDS	24005846	24006584	.	-	0	Parent=Os06t0605600-01
Chr06	irgsp1_rep	CDS	24005460	24005779	.	-	2	Parent=Os06t0605600-01
Chr06	irgsp1_rep	three_prime_UTR	24005166	24005459	.	-	.	Parent=Os06t0605600-01
Chr06	irgsp1_rep	mRNA	24033805	24036789	.	+	.	ID=Os06t0605900-01;Name=Os06t0605900-01;Locus_id=Os06g0605900;RAP-DB Gene Symbol Synonym(s)=OsEBF1;RAP-DB Gene Name Synonym(s)=EIN3-binding F-box protein 1;Oryzabase Gene Symbol Synonym(s)=OsFbox316%2C Fbox316%2C Os_F0624%2C OsEBF1%2C EBF1;Oryzabase Gene Name Synonym(s)=F-box protein 316%2C EIN3-BINDING F-BOX PROTEIN 1;Note=E3 ligase%2C Resistance to brown planthopper (BPH);Transcript_evidence=AK065140;ORF_evidence=Q69X07;GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box-like domain superfamily (IPR036047),Leucine-rich repeat domain superfamily (IPR032675),Leucine-rich repeat%2C cysteine-containing subtype (IPR006553),Leucine-rich repeat (IPR001611);NIAS_FLcDNA=J013002A13;Manual Curation=September 12%2C 2019;Literature_PMID=31407341;Oryzabase=17094;Expression=AK065140;TENOR=Os06t0605900-01;KEGG=Os06t0605900-01;Subcellular location=nucleus (GO:0005634)
Chr06	irgsp1_rep	five_prime_UTR	24033805	24033926	.	+	.	Parent=Os06t0605900-01
Chr06	irgsp1_rep	CDS	24033927	24033951	.	+	0	Parent=Os06t0605900-01
Chr06	irgsp1_rep	CDS	24034033	24034676	.	+	2	Parent=Os06t0605900-01
Chr06	irgsp1_rep	CDS	24034788	24036002	.	+	0	Parent=Os06t0605900-01
Chr06	irgsp1_rep	three_prime_UTR	24036003	24036789	.	+	.	Parent=Os06t0605900-01
Chr06	irgsp1_rep	mRNA	24035632	24036789	.	+	.	ID=Os06t0605900-02;Name=Os06t0605900-02;Locus_id=Os06g0605900;Oryzabase Gene Symbol Synonym(s)=OsFbox316%2C Fbox316%2C Os_F0624%2C OsEBF1%2C EBF1;Oryzabase Gene Name Synonym(s)=F-box protein 316%2C EIN3-BINDING F-BOX PROTEIN 1;Note=Leucine-rich repeat%2C cysteine-containing subtype containing protein.;Transcript_evidence=AK061949 (DDBJ%2C Best hit);ORF_evidence=Q69X07 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=001-042-E08;Oryzabase=17094;Expression=AK061949;TENOR=Os06t0605900-02;KEGG=Os06t0605900-02
Chr06	irgsp1_rep	five_prime_UTR	24035632	24035633	.	+	.	Parent=Os06t0605900-02
Chr06	irgsp1_rep	CDS	24035634	24036002	.	+	0	Parent=Os06t0605900-02
Chr06	irgsp1_rep	three_prime_UTR	24036003	24036789	.	+	.	Parent=Os06t0605900-02
Chr06	irgsp1_rep	mRNA	24036208	24036789	.	-	.	ID=Os06t0605950-00;Name=Os06t0605950-00;Locus_id=Os06g0605950;Note=Hypothetical protein.;Transcript_evidence=BT054665 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0605950-00
Chr06	irgsp1_rep	five_prime_UTR	24036788	24036789	.	-	.	Parent=Os06t0605950-00
Chr06	irgsp1_rep	CDS	24036645	24036787	.	-	0	Parent=Os06t0605950-00
Chr06	irgsp1_rep	CDS	24036448	24036517	.	-	1	Parent=Os06t0605950-00
Chr06	irgsp1_rep	three_prime_UTR	24036208	24036447	.	-	.	Parent=Os06t0605950-00
Chr06	irgsp1_rep	mRNA	24038959	24044785	.	-	.	ID=Os06t0606000-01;Name=Os06t0606000-01;Locus_id=Os06g0606000;RAP-DB Gene Symbol Synonym(s)=OsSOS2%2C OsCIPK24;RAP-DB Gene Name Synonym(s)=SALT OVERLY SENSITIVE 2%2C CBL-interacting protein kinase 24;CGSNL Gene Symbol=CIPK24;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 24;Oryzabase Gene Symbol Synonym(s)=OsCIPK24%2C SOS2%2C OsSOS2;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 24%2C salt overly sensitive 2%2C low-cesium rice mutant 1;Note=Serine/threonine-protein kinase required for the salt overly sensitive (SOS) pathway%2C Calcineurin B-like (CBL) protein-interacting protein kinase%2C Control of intracellular Na<sup>+</sup> and K<sup>+</sup> homeostasis%2C Salt tolerance%2C Mutation in OsSOS2 reduces radiocesium in rice grain;Transcript_evidence=AK102270;ORF_evidence=Q69Q47;GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),Protein kinase domain (IPR000719),NAF/FISL domain (IPR018451),NAF domain (IPR004041),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J033088P20;Manual Curation=April 24%2C 2018;Literature_PMID=28546542,17142477,14730064;Oryzabase=7412;Expression=AK102270;TENOR=Os06t0606000-01;KEGG=Os06t0606000-01 (EC:2.7.11.1)
Chr06	irgsp1_rep	five_prime_UTR	24044688	24044785	.	-	.	Parent=Os06t0606000-01
Chr06	irgsp1_rep	CDS	24044502	24044687	.	-	0	Parent=Os06t0606000-01
Chr06	irgsp1_rep	CDS	24043325	24043387	.	-	0	Parent=Os06t0606000-01
Chr06	irgsp1_rep	CDS	24043133	24043204	.	-	0	Parent=Os06t0606000-01
Chr06	irgsp1_rep	CDS	24042767	24042874	.	-	0	Parent=Os06t0606000-01
Chr06	irgsp1_rep	CDS	24042599	24042673	.	-	0	Parent=Os06t0606000-01
Chr06	irgsp1_rep	CDS	24042461	24042514	.	-	0	Parent=Os06t0606000-01
Chr06	irgsp1_rep	CDS	24041836	24041961	.	-	0	Parent=Os06t0606000-01
Chr06	irgsp1_rep	CDS	24041619	24041708	.	-	0	Parent=Os06t0606000-01
Chr06	irgsp1_rep	CDS	24041143	24041265	.	-	0	Parent=Os06t0606000-01
Chr06	irgsp1_rep	CDS	24040938	24041057	.	-	0	Parent=Os06t0606000-01
Chr06	irgsp1_rep	CDS	24040037	24040153	.	-	0	Parent=Os06t0606000-01
Chr06	irgsp1_rep	CDS	24039897	24039953	.	-	0	Parent=Os06t0606000-01
Chr06	irgsp1_rep	CDS	24039719	24039793	.	-	0	Parent=Os06t0606000-01
Chr06	irgsp1_rep	CDS	24039414	24039509	.	-	0	Parent=Os06t0606000-01
Chr06	irgsp1_rep	three_prime_UTR	24038959	24039413	.	-	.	Parent=Os06t0606000-01
Chr06	irgsp1_rep	mRNA	24069342	24072302	.	-	.	ID=Os06t0606100-01;Name=Os06t0606100-01;Locus_id=Os06g0606100;Note=Hypothetical conserved gene.;Transcript_evidence=AK121642 (DDBJ%2C Best hit);ORF_evidence=B8B4E4 (UniProt);NIAS_FLcDNA=J033055N21;Expression=AK121642;TENOR=Os06t0606100-01;KEGG=Os06t0606100-01
Chr06	irgsp1_rep	CDS	24072137	24072302	.	-	0	Parent=Os06t0606100-01
Chr06	irgsp1_rep	CDS	24071943	24072055	.	-	2	Parent=Os06t0606100-01
Chr06	irgsp1_rep	three_prime_UTR	24070400	24071942	.	-	.	Parent=Os06t0606100-01
Chr06	irgsp1_rep	three_prime_UTR	24070232	24070309	.	-	.	Parent=Os06t0606100-01
Chr06	irgsp1_rep	three_prime_UTR	24069342	24069688	.	-	.	Parent=Os06t0606100-01
Chr06	irgsp1_rep	mRNA	24076004	24077701	.	-	.	ID=Os06t0606250-00;Name=Os06t0606250-00;Locus_id=Os06g0606250;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0001l19 (Wheat FLcDNA);ORF_evidence=NP_001172185.1 (RefSeq);TENOR=Os06t0606250-00
Chr06	irgsp1_rep	CDS	24076004	24077701	.	-	0	Parent=Os06t0606250-00
Chr06	irgsp1_rep	mRNA	24082751	24084415	.	-	.	ID=Os06t0606401-01;Name=Os06t0606401-01;Locus_id=Os06g0606401;Note=Hypothetical gene.;Transcript_evidence=AK288569 (DDBJ%2C Best hit);ORF_evidence=Q69JZ3 (UniProt);NIAS_FLcDNA=J090048C01;TENOR=Os06t0606401-01;KEGG=Os06t0606401-01
Chr06	irgsp1_rep	five_prime_UTR	24083314	24084415	.	-	.	Parent=Os06t0606401-01
Chr06	irgsp1_rep	CDS	24082867	24083313	.	-	0	Parent=Os06t0606401-01
Chr06	irgsp1_rep	three_prime_UTR	24082751	24082866	.	-	.	Parent=Os06t0606401-01
Chr06	irgsp1_rep	mRNA	24089888	24090184	.	-	.	ID=Os06t0606599-00;Name=Os06t0606599-00;Locus_id=Os06g0606599;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os06t0606599-00
Chr06	irgsp1_rep	CDS	24089888	24090184	.	-	0	Parent=Os06t0606599-00
Chr06	irgsp1_rep	mRNA	24089944	24091422	.	+	.	ID=Os06t0606700-00;Name=Os06t0606700-00;Locus_id=Os06g0606700;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK359397 (DDBJ);ORF_evidence=Q69Q43 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026);TENOR=Os06t0606700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	24089944	24089969	.	+	.	Parent=Os06t0606700-00
Chr06	irgsp1_rep	CDS	24089970	24090676	.	+	0	Parent=Os06t0606700-00
Chr06	irgsp1_rep	CDS	24090745	24090874	.	+	1	Parent=Os06t0606700-00
Chr06	irgsp1_rep	three_prime_UTR	24090875	24091422	.	+	.	Parent=Os06t0606700-00
Chr06	irgsp1_rep	mRNA	24091282	24096110	.	-	.	ID=Os06t0606800-01;Name=Os06t0606800-01;Locus_id=Os06g0606800;Note=Targeting for Xklp2 family protein.;Transcript_evidence=AK066355 (DDBJ%2C Best hit);ORF_evidence=B6U8B2 (UniProt);InterPro=Xklp2 targeting protein (IPR009675);NIAS_FLcDNA=J013067N05;Expression=AK066355;TENOR=Os06t0606800-01;KEGG=Os06t0606800-01
Chr06	irgsp1_rep	five_prime_UTR	24095988	24096110	.	-	.	Parent=Os06t0606800-01
Chr06	irgsp1_rep	five_prime_UTR	24095417	24095588	.	-	.	Parent=Os06t0606800-01
Chr06	irgsp1_rep	CDS	24095192	24095416	.	-	0	Parent=Os06t0606800-01
Chr06	irgsp1_rep	CDS	24094923	24095108	.	-	0	Parent=Os06t0606800-01
Chr06	irgsp1_rep	CDS	24094726	24094784	.	-	0	Parent=Os06t0606800-01
Chr06	irgsp1_rep	CDS	24094151	24094307	.	-	1	Parent=Os06t0606800-01
Chr06	irgsp1_rep	CDS	24093989	24094060	.	-	0	Parent=Os06t0606800-01
Chr06	irgsp1_rep	CDS	24093764	24093874	.	-	0	Parent=Os06t0606800-01
Chr06	irgsp1_rep	CDS	24091639	24091947	.	-	0	Parent=Os06t0606800-01
Chr06	irgsp1_rep	three_prime_UTR	24091282	24091638	.	-	.	Parent=Os06t0606800-01
Chr06	irgsp1_rep	mRNA	24094165	24096106	.	-	.	ID=Os06t0606800-02;Name=Os06t0606800-02;Locus_id=Os06g0606800;Note=Similar to WDL1.;Transcript_evidence=AK106565 (DDBJ%2C Best hit);ORF_evidence=B6U8B2 (UniProt);NIAS_FLcDNA=002-110-D09;Expression=AK106565;TENOR=Os06t0606800-02;KEGG=Os06t0606800-02
Chr06	irgsp1_rep	five_prime_UTR	24095988	24096106	.	-	.	Parent=Os06t0606800-02
Chr06	irgsp1_rep	five_prime_UTR	24095417	24095588	.	-	.	Parent=Os06t0606800-02
Chr06	irgsp1_rep	CDS	24095192	24095416	.	-	0	Parent=Os06t0606800-02
Chr06	irgsp1_rep	CDS	24094830	24095108	.	-	0	Parent=Os06t0606800-02
Chr06	irgsp1_rep	three_prime_UTR	24094165	24094829	.	-	.	Parent=Os06t0606800-02
Chr06	irgsp1_rep	mRNA	24091286	24095333	.	-	.	ID=Os06t0606800-03;Name=Os06t0606800-03;Locus_id=Os06g0606800;Note=Similar to WDL1.;Transcript_evidence=AK061909 (DDBJ%2C Best hit);ORF_evidence=B6U8B2 (UniProt);InterPro=Xklp2 targeting protein (IPR009675);NIAS_FLcDNA=001-042-A02;Expression=AK061909;TENOR=Os06t0606800-03;KEGG=Os06t0606800-03
Chr06	irgsp1_rep	five_prime_UTR	24095333	24095333	.	-	.	Parent=Os06t0606800-03
Chr06	irgsp1_rep	CDS	24095192	24095332	.	-	0	Parent=Os06t0606800-03
Chr06	irgsp1_rep	CDS	24094923	24095108	.	-	0	Parent=Os06t0606800-03
Chr06	irgsp1_rep	CDS	24094726	24094787	.	-	0	Parent=Os06t0606800-03
Chr06	irgsp1_rep	CDS	24094151	24094307	.	-	1	Parent=Os06t0606800-03
Chr06	irgsp1_rep	CDS	24093989	24094060	.	-	0	Parent=Os06t0606800-03
Chr06	irgsp1_rep	CDS	24093764	24093874	.	-	0	Parent=Os06t0606800-03
Chr06	irgsp1_rep	CDS	24091639	24091947	.	-	0	Parent=Os06t0606800-03
Chr06	irgsp1_rep	three_prime_UTR	24091286	24091638	.	-	.	Parent=Os06t0606800-03
Chr06	irgsp1_rep	mRNA	24102986	24106991	.	+	.	ID=Os06t0606900-01;Name=Os06t0606900-01;Locus_id=Os06g0606900;Note=Conserved hypothetical protein.;Transcript_evidence=AK068134 (DDBJ%2C Best hit);ORF_evidence=B9FU26 (UniProt);NIAS_FLcDNA=J013133M15;TENOR=Os06t0606900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	24102986	24103043	.	+	.	Parent=Os06t0606900-01
Chr06	irgsp1_rep	CDS	24103044	24103293	.	+	0	Parent=Os06t0606900-01
Chr06	irgsp1_rep	CDS	24103989	24104035	.	+	2	Parent=Os06t0606900-01
Chr06	irgsp1_rep	CDS	24104640	24104786	.	+	0	Parent=Os06t0606900-01
Chr06	irgsp1_rep	CDS	24105001	24105192	.	+	0	Parent=Os06t0606900-01
Chr06	irgsp1_rep	CDS	24105520	24105822	.	+	0	Parent=Os06t0606900-01
Chr06	irgsp1_rep	CDS	24105974	24106051	.	+	0	Parent=Os06t0606900-01
Chr06	irgsp1_rep	CDS	24106716	24106991	.	+	0	Parent=Os06t0606900-01
Chr06	irgsp1_rep	mRNA	24127167	24130368	.	+	.	ID=Os06t0607000-01;Name=Os06t0607000-01;Locus_id=Os06g0607000;Note=Similar to Beta-1%2C3-glucanase.;Transcript_evidence=AK121115 (DDBJ%2C Best hit);ORF_evidence=A4PID2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J023073M23;TENOR=Os06t0607000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	24127167	24127607	.	+	.	Parent=Os06t0607000-01
Chr06	irgsp1_rep	CDS	24127608	24127932	.	+	0	Parent=Os06t0607000-01
Chr06	irgsp1_rep	CDS	24128112	24129151	.	+	2	Parent=Os06t0607000-01
Chr06	irgsp1_rep	CDS	24130172	24130255	.	+	0	Parent=Os06t0607000-01
Chr06	irgsp1_rep	three_prime_UTR	24130256	24130368	.	+	.	Parent=Os06t0607000-01
Chr06	irgsp1_rep	mRNA	24139350	24142390	.	+	.	ID=Os06t0607100-01;Name=Os06t0607100-01;Locus_id=Os06g0607100;CGSNL Gene Symbol=PDCT;CGSNL Gene Name=PHOSPHATIDYLCHOLINE:DIACYLGLYCEROL CHOLINEPHOSPHOTRANSFERASE;Oryzabase Gene Symbol Synonym(s)=OsPDCT;Oryzabase Gene Name Synonym(s)=phosphatidylcholine:diacylglycerol cholinephosphotransferase;Note=Similar to phosphatidic acid phosphatase-related / PAP2-related.;Transcript_evidence=AK071250 (DDBJ%2C Best hit);ORF_evidence=NP_566527.1 (RefSeq);NIAS_FLcDNA=J023088G11;Oryzabase=23624;Expression=AK071250;TENOR=Os06t0607100-01;KEGG=Os06t0607100-01
Chr06	irgsp1_rep	five_prime_UTR	24139350	24139479	.	+	.	Parent=Os06t0607100-01
Chr06	irgsp1_rep	CDS	24139480	24139920	.	+	0	Parent=Os06t0607100-01
Chr06	irgsp1_rep	CDS	24141739	24142221	.	+	0	Parent=Os06t0607100-01
Chr06	irgsp1_rep	three_prime_UTR	24142222	24142390	.	+	.	Parent=Os06t0607100-01
Chr06	irgsp1_rep	mRNA	24142517	24147434	.	-	.	ID=Os06t0607200-01;Name=Os06t0607200-01;Locus_id=Os06g0607200;Note=Similar to Cellular retinaldehyde binding/alpha-tocopherol transport%3B Cellular retinaldehyde-binding/triple function%2C N-terminal.;Transcript_evidence=AK242958 (DDBJ%2C Best hit);ORF_evidence=Q2HV32 (UniProt);InterPro=Cellular retinaldehyde-binding/triple function%2C N-terminal (IPR008273),Phosphatidylinositol transfer protein-like%2C N-terminal (IPR011074);NIAS_FLcDNA=J090089K02;TENOR=Os06t0607200-01;KEGG=Os06t0607200-01
Chr06	irgsp1_rep	five_prime_UTR	24147312	24147434	.	-	.	Parent=Os06t0607200-01
Chr06	irgsp1_rep	CDS	24147254	24147311	.	-	0	Parent=Os06t0607200-01
Chr06	irgsp1_rep	CDS	24147099	24147127	.	-	2	Parent=Os06t0607200-01
Chr06	irgsp1_rep	CDS	24145449	24145532	.	-	0	Parent=Os06t0607200-01
Chr06	irgsp1_rep	CDS	24145128	24145181	.	-	0	Parent=Os06t0607200-01
Chr06	irgsp1_rep	CDS	24144754	24144831	.	-	0	Parent=Os06t0607200-01
Chr06	irgsp1_rep	CDS	24144148	24144218	.	-	0	Parent=Os06t0607200-01
Chr06	irgsp1_rep	CDS	24143904	24143967	.	-	1	Parent=Os06t0607200-01
Chr06	irgsp1_rep	three_prime_UTR	24143720	24143903	.	-	.	Parent=Os06t0607200-01
Chr06	irgsp1_rep	three_prime_UTR	24143499	24143600	.	-	.	Parent=Os06t0607200-01
Chr06	irgsp1_rep	three_prime_UTR	24143333	24143413	.	-	.	Parent=Os06t0607200-01
Chr06	irgsp1_rep	three_prime_UTR	24142517	24143107	.	-	.	Parent=Os06t0607200-01
Chr06	irgsp1_rep	mRNA	24175745	24181930	.	+	.	ID=Os06t0607700-01;Name=Os06t0607700-01;Locus_id=Os06g0607700;RAP-DB Gene Symbol Synonym(s)=ABCG15%2C OsABCG15;RAP-DB Gene Name Synonym(s)=ABC TRANSPORTER G FAMILY MEMBER 15%2C ABC transporter superfamily ABCG subgroup member 15;CGSNL Gene Symbol=ABCG15;CGSNL Gene Name=ABC TRANSPORTER G FAMILY MEMBER 15;Oryzabase Gene Symbol Synonym(s)=OsABCG15%2C PDA%2C PDA1%2C OsABCG15/PDA1;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 15%2C post-meiotic deficient anther1%2C Postmeiotic Deficient Anther1%2C ATP binding cassette G15%2C ATP binding cassette subfamily G 15;Note=ATP-binding cassette (ABC) transporter%2C Post-meiotic anther and pollen development;Transcript_evidence=AK106792;ORF_evidence=Q69Q33;GO=Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Cellular Component: membrane (GO:0016020);InterPro=ABC transporter-like (IPR003439),P-loop containing nucleoside triphosphate hydrolase (IPR027417),AAA+ ATPase domain (IPR003593),ABC-2 type transporter (IPR013525);NIAS_FLcDNA=002-116-A10;Manual Curation=December 10%2C 2014;Literature_PMID=23220695;Oryzabase=11992;TENOR=Os06t0607700-01;KEGG=Os06t0607700-01
Chr06	irgsp1_rep	five_prime_UTR	24175745	24175786	.	+	.	Parent=Os06t0607700-01
Chr06	irgsp1_rep	CDS	24175787	24175945	.	+	0	Parent=Os06t0607700-01
Chr06	irgsp1_rep	CDS	24176626	24176909	.	+	0	Parent=Os06t0607700-01
Chr06	irgsp1_rep	CDS	24177996	24178151	.	+	1	Parent=Os06t0607700-01
Chr06	irgsp1_rep	CDS	24178970	24179456	.	+	1	Parent=Os06t0607700-01
Chr06	irgsp1_rep	CDS	24179516	24179833	.	+	0	Parent=Os06t0607700-01
Chr06	irgsp1_rep	CDS	24180425	24180817	.	+	0	Parent=Os06t0607700-01
Chr06	irgsp1_rep	CDS	24181404	24181673	.	+	0	Parent=Os06t0607700-01
Chr06	irgsp1_rep	three_prime_UTR	24181674	24181930	.	+	.	Parent=Os06t0607700-01
Chr06	irgsp1_rep	mRNA	24176737	24179353	.	-	.	ID=Os06t0607750-00;Name=Os06t0607750-00;Locus_id=Os06g0607750;Note=Hypothetical protein.;Transcript_evidence=BT084685 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0607750-00
Chr06	irgsp1_rep	five_prime_UTR	24179255	24179353	.	-	.	Parent=Os06t0607750-00
Chr06	irgsp1_rep	CDS	24178963	24179254	.	-	0	Parent=Os06t0607750-00
Chr06	irgsp1_rep	CDS	24178127	24178143	.	-	2	Parent=Os06t0607750-00
Chr06	irgsp1_rep	three_prime_UTR	24177994	24178126	.	-	.	Parent=Os06t0607750-00
Chr06	irgsp1_rep	three_prime_UTR	24176737	24176898	.	-	.	Parent=Os06t0607750-00
Chr06	irgsp1_rep	mRNA	24182542	24186597	.	+	.	ID=Os06t0607800-01;Name=Os06t0607800-01;Locus_id=Os06g0607800;CGSNL Gene Symbol=RPT4B;CGSNL Gene Name=19S REGULATORY PARTICLE ATPASE SUBUNIT 4B;Oryzabase Gene Symbol Synonym(s)=OsRpt4b%2C Rpt4b;Oryzabase Gene Name Synonym(s)=19S regulatory particle ATPase subunit 4b%2C RP triple A-ATPase 4b;Note=Similar to 26S proteasome regulatory complex subunit p42D.;Transcript_evidence=AK063158 (DDBJ%2C Best hit),AK066695 (DDBJ%2C Best hit);ORF_evidence=C0J9X5 (UniProt);GO=Biological Process: protein catabolic process (GO:0030163),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960),26S proteasome subunit P45 (IPR005937);NIAS_FLcDNA=001-044-C12,J013074G13;Oryzabase=20558;TENOR=Os06t0607800-01
Chr06	irgsp1_rep	five_prime_UTR	24182542	24182649	.	+	.	Parent=Os06t0607800-01
Chr06	irgsp1_rep	CDS	24182650	24182758	.	+	0	Parent=Os06t0607800-01
Chr06	irgsp1_rep	CDS	24183490	24183609	.	+	2	Parent=Os06t0607800-01
Chr06	irgsp1_rep	CDS	24183833	24183969	.	+	2	Parent=Os06t0607800-01
Chr06	irgsp1_rep	CDS	24184070	24184231	.	+	0	Parent=Os06t0607800-01
Chr06	irgsp1_rep	CDS	24184359	24184445	.	+	0	Parent=Os06t0607800-01
Chr06	irgsp1_rep	CDS	24184524	24184610	.	+	0	Parent=Os06t0607800-01
Chr06	irgsp1_rep	CDS	24184969	24185106	.	+	0	Parent=Os06t0607800-01
Chr06	irgsp1_rep	CDS	24185675	24185866	.	+	0	Parent=Os06t0607800-01
Chr06	irgsp1_rep	CDS	24185939	24186037	.	+	0	Parent=Os06t0607800-01
Chr06	irgsp1_rep	CDS	24186142	24186216	.	+	0	Parent=Os06t0607800-01
Chr06	irgsp1_rep	three_prime_UTR	24186217	24186597	.	+	.	Parent=Os06t0607800-01
Chr06	irgsp1_rep	mRNA	24183835	24186043	.	-	.	ID=Os06t0607850-00;Name=Os06t0607850-00;Locus_id=Os06g0607850;Note=Hypothetical protein.;Transcript_evidence=tplb0035c03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0607850-00
Chr06	irgsp1_rep	five_prime_UTR	24185925	24186043	.	-	.	Parent=Os06t0607850-00
Chr06	irgsp1_rep	five_prime_UTR	24185828	24185857	.	-	.	Parent=Os06t0607850-00
Chr06	irgsp1_rep	CDS	24185665	24185827	.	-	0	Parent=Os06t0607850-00
Chr06	irgsp1_rep	CDS	24185018	24185097	.	-	2	Parent=Os06t0607850-00
Chr06	irgsp1_rep	three_prime_UTR	24184945	24185017	.	-	.	Parent=Os06t0607850-00
Chr06	irgsp1_rep	three_prime_UTR	24184513	24184591	.	-	.	Parent=Os06t0607850-00
Chr06	irgsp1_rep	three_prime_UTR	24184327	24184435	.	-	.	Parent=Os06t0607850-00
Chr06	irgsp1_rep	three_prime_UTR	24184053	24184204	.	-	.	Parent=Os06t0607850-00
Chr06	irgsp1_rep	three_prime_UTR	24183835	24183957	.	-	.	Parent=Os06t0607850-00
Chr06	irgsp1_rep	mRNA	24189866	24192933	.	+	.	ID=Os06t0607900-01;Name=Os06t0607900-01;Locus_id=Os06g0607900;CGSNL Gene Symbol=OSNOP;CGSNL Gene Name=NO POLLEN;Oryzabase Gene Symbol Synonym(s)=Osnop%2C nop;Oryzabase Gene Name Synonym(s)=no pollen gene%2C no pollen%2C C2 and GRAM domain containing protein%3B Osnop;Note=GRAM domain containing protein.;Transcript_evidence=AK070879 (DDBJ%2C Best hit);ORF_evidence=C0J9X6 (UniProt);InterPro=GRAM (IPR004182);NIAS_FLcDNA=J023065L10;Oryzabase=6242;Expression=AK070879;TENOR=Os06t0607900-01;KEGG=Os06t0607900-01
Chr06	irgsp1_rep	five_prime_UTR	24189866	24189940	.	+	.	Parent=Os06t0607900-01
Chr06	irgsp1_rep	CDS	24189941	24189982	.	+	0	Parent=Os06t0607900-01
Chr06	irgsp1_rep	CDS	24190064	24190180	.	+	0	Parent=Os06t0607900-01
Chr06	irgsp1_rep	CDS	24190469	24190728	.	+	0	Parent=Os06t0607900-01
Chr06	irgsp1_rep	CDS	24191173	24191341	.	+	1	Parent=Os06t0607900-01
Chr06	irgsp1_rep	CDS	24191448	24191720	.	+	0	Parent=Os06t0607900-01
Chr06	irgsp1_rep	CDS	24191903	24192095	.	+	0	Parent=Os06t0607900-01
Chr06	irgsp1_rep	CDS	24192565	24192575	.	+	2	Parent=Os06t0607900-01
Chr06	irgsp1_rep	three_prime_UTR	24192576	24192933	.	+	.	Parent=Os06t0607900-01
Chr06	irgsp1_rep	mRNA	24194693	24195716	.	+	.	ID=Os06t0608000-01;Name=Os06t0608000-01;Locus_id=Os06g0608000;Note=Similar to PGPS/D10.;Transcript_evidence=AK119328 (DDBJ%2C Best hit);ORF_evidence=A3BDF7 (UniProt);NIAS_FLcDNA=001-131-B03;Expression=AK119328;TENOR=Os06t0608000-01;KEGG=Os06t0608000-01
Chr06	irgsp1_rep	five_prime_UTR	24194693	24194805	.	+	.	Parent=Os06t0608000-01
Chr06	irgsp1_rep	five_prime_UTR	24195095	24195134	.	+	.	Parent=Os06t0608000-01
Chr06	irgsp1_rep	CDS	24195135	24195506	.	+	0	Parent=Os06t0608000-01
Chr06	irgsp1_rep	three_prime_UTR	24195507	24195716	.	+	.	Parent=Os06t0608000-01
Chr06	irgsp1_rep	mRNA	24197088	24199669	.	+	.	ID=Os06t0608050-01;Name=Os06t0608050-01;Locus_id=Os06g0608050;Note=Non-protein coding transcript.;Transcript_evidence=AK241542 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065175L14;TENOR=Os06t0608050-01
Chr06	irgsp1_rep	exon	24197088	24197370	.	+	.	Parent=Os06t0608050-01
Chr06	irgsp1_rep	exon	24199077	24199219	.	+	.	Parent=Os06t0608050-01
Chr06	irgsp1_rep	exon	24199314	24199669	.	+	.	Parent=Os06t0608050-01
Chr06	irgsp1_rep	mRNA	24198253	24206081	.	+	.	ID=Os06t0608050-02;Name=Os06t0608050-02;Locus_id=Os06g0608050;Note=Hypothetical gene.;Transcript_evidence=AK241742 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065201M17;TENOR=Os06t0608050-02;KEGG=Os06t0608050-02
Chr06	irgsp1_rep	five_prime_UTR	24198253	24198649	.	+	.	Parent=Os06t0608050-02
Chr06	irgsp1_rep	five_prime_UTR	24198732	24198816	.	+	.	Parent=Os06t0608050-02
Chr06	irgsp1_rep	five_prime_UTR	24199332	24199443	.	+	.	Parent=Os06t0608050-02
Chr06	irgsp1_rep	five_prime_UTR	24200855	24200956	.	+	.	Parent=Os06t0608050-02
Chr06	irgsp1_rep	five_prime_UTR	24201027	24201099	.	+	.	Parent=Os06t0608050-02
Chr06	irgsp1_rep	five_prime_UTR	24201570	24201649	.	+	.	Parent=Os06t0608050-02
Chr06	irgsp1_rep	five_prime_UTR	24201728	24201919	.	+	.	Parent=Os06t0608050-02
Chr06	irgsp1_rep	five_prime_UTR	24202597	24202716	.	+	.	Parent=Os06t0608050-02
Chr06	irgsp1_rep	five_prime_UTR	24202809	24202896	.	+	.	Parent=Os06t0608050-02
Chr06	irgsp1_rep	five_prime_UTR	24202971	24203005	.	+	.	Parent=Os06t0608050-02
Chr06	irgsp1_rep	five_prime_UTR	24203099	24203170	.	+	.	Parent=Os06t0608050-02
Chr06	irgsp1_rep	five_prime_UTR	24203512	24203583	.	+	.	Parent=Os06t0608050-02
Chr06	irgsp1_rep	five_prime_UTR	24203706	24204841	.	+	.	Parent=Os06t0608050-02
Chr06	irgsp1_rep	five_prime_UTR	24205663	24205850	.	+	.	Parent=Os06t0608050-02
Chr06	irgsp1_rep	CDS	24205851	24206081	.	+	0	Parent=Os06t0608050-02
Chr06	irgsp1_rep	mRNA	24198474	24206035	.	-	.	ID=Os06t0608100-00;Name=Os06t0608100-00;Locus_id=Os06g0608100;Note=Hypothetical conserved gene.;Transcript_evidence=tplb0012d16 (Wheat FLcDNA);ORF_evidence=NP_001058037.2 (RefSeq);TENOR=Os06t0608100-00;KEGG=Os06t0608100-00
Chr06	irgsp1_rep	five_prime_UTR	24206015	24206035	.	-	.	Parent=Os06t0608100-00
Chr06	irgsp1_rep	CDS	24205663	24206014	.	-	0	Parent=Os06t0608100-00
Chr06	irgsp1_rep	CDS	24203676	24204841	.	-	2	Parent=Os06t0608100-00
Chr06	irgsp1_rep	three_prime_UTR	24203236	24203675	.	-	.	Parent=Os06t0608100-00
Chr06	irgsp1_rep	three_prime_UTR	24203081	24203170	.	-	.	Parent=Os06t0608100-00
Chr06	irgsp1_rep	three_prime_UTR	24202809	24202896	.	-	.	Parent=Os06t0608100-00
Chr06	irgsp1_rep	three_prime_UTR	24202549	24202716	.	-	.	Parent=Os06t0608100-00
Chr06	irgsp1_rep	three_prime_UTR	24201728	24201919	.	-	.	Parent=Os06t0608100-00
Chr06	irgsp1_rep	three_prime_UTR	24201570	24201649	.	-	.	Parent=Os06t0608100-00
Chr06	irgsp1_rep	three_prime_UTR	24201027	24201099	.	-	.	Parent=Os06t0608100-00
Chr06	irgsp1_rep	three_prime_UTR	24200855	24200956	.	-	.	Parent=Os06t0608100-00
Chr06	irgsp1_rep	three_prime_UTR	24199332	24199443	.	-	.	Parent=Os06t0608100-00
Chr06	irgsp1_rep	three_prime_UTR	24198723	24198816	.	-	.	Parent=Os06t0608100-00
Chr06	irgsp1_rep	three_prime_UTR	24198474	24198649	.	-	.	Parent=Os06t0608100-00
Chr06	irgsp1_rep	mRNA	24206659	24212569	.	-	.	ID=Os06t0608300-01;Name=Os06t0608300-01;Locus_id=Os06g0608300;Note=Similar to Small nuclear ribonucleoprotein component.;Transcript_evidence=AK102908 (DDBJ%2C Best hit);ORF_evidence=C0J9X8 (UniProt);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Translation elongation factor EFG/EF2%2C C-terminal (IPR000640),Protein synthesis factor%2C GTP-binding (IPR000795),Translation elongation factor EFTu/EF1A%2C domain 2 (IPR004161),Small GTP-binding protein domain (IPR005225),Translation elongation factor EFG/EF2%2C domain IV (IPR005517),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Elongation factor G/III/V (IPR009022),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=J033113H11;Expression=AK102908;TENOR=Os06t0608300-01;KEGG=Os06t0608300-01
Chr06	irgsp1_rep	five_prime_UTR	24212465	24212569	.	-	.	Parent=Os06t0608300-01
Chr06	irgsp1_rep	CDS	24211694	24212464	.	-	0	Parent=Os06t0608300-01
Chr06	irgsp1_rep	CDS	24210318	24210386	.	-	0	Parent=Os06t0608300-01
Chr06	irgsp1_rep	CDS	24209037	24210230	.	-	0	Parent=Os06t0608300-01
Chr06	irgsp1_rep	CDS	24208856	24208954	.	-	0	Parent=Os06t0608300-01
Chr06	irgsp1_rep	CDS	24208592	24208750	.	-	0	Parent=Os06t0608300-01
Chr06	irgsp1_rep	CDS	24208062	24208147	.	-	0	Parent=Os06t0608300-01
Chr06	irgsp1_rep	CDS	24207776	24207974	.	-	1	Parent=Os06t0608300-01
Chr06	irgsp1_rep	CDS	24207559	24207669	.	-	0	Parent=Os06t0608300-01
Chr06	irgsp1_rep	CDS	24207268	24207474	.	-	0	Parent=Os06t0608300-01
Chr06	irgsp1_rep	CDS	24207079	24207177	.	-	0	Parent=Os06t0608300-01
Chr06	irgsp1_rep	three_prime_UTR	24206659	24207078	.	-	.	Parent=Os06t0608300-01
Chr06	irgsp1_rep	mRNA	24206697	24209749	.	-	.	ID=Os06t0608300-02;Name=Os06t0608300-02;Locus_id=Os06g0608300;Note=Similar to U5 small nuclear ribonucleoprotein component.;Transcript_evidence=AK058674 (DDBJ%2C Best hit);ORF_evidence=C0J9X8 (UniProt);GO=Molecular Function: GTP binding (GO:0005525);InterPro=Translation elongation factor EFG/EF2%2C C-terminal (IPR000640),Translation elongation factor EFTu/EF1A%2C domain 2 (IPR004161),Translation elongation factor EFG/EF2%2C domain IV (IPR005517),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Elongation factor G/III/V (IPR009022),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=001-018-H06;Expression=AK058674;TENOR=Os06t0608300-02;KEGG=Os06t0608300-02
Chr06	irgsp1_rep	five_prime_UTR	24209748	24209749	.	-	.	Parent=Os06t0608300-02
Chr06	irgsp1_rep	CDS	24209037	24209747	.	-	0	Parent=Os06t0608300-02
Chr06	irgsp1_rep	CDS	24208856	24208954	.	-	0	Parent=Os06t0608300-02
Chr06	irgsp1_rep	CDS	24208592	24208750	.	-	0	Parent=Os06t0608300-02
Chr06	irgsp1_rep	CDS	24208062	24208147	.	-	0	Parent=Os06t0608300-02
Chr06	irgsp1_rep	CDS	24207776	24207974	.	-	1	Parent=Os06t0608300-02
Chr06	irgsp1_rep	CDS	24207559	24207669	.	-	0	Parent=Os06t0608300-02
Chr06	irgsp1_rep	CDS	24207268	24207474	.	-	0	Parent=Os06t0608300-02
Chr06	irgsp1_rep	CDS	24207079	24207177	.	-	0	Parent=Os06t0608300-02
Chr06	irgsp1_rep	three_prime_UTR	24206697	24207078	.	-	.	Parent=Os06t0608300-02
Chr06	irgsp1_rep	mRNA	24207063	24212573	.	+	.	ID=Os06t0608350-00;Name=Os06t0608350-00;Locus_id=Os06g0608350;Note=Hypothetical protein.;Transcript_evidence=tplb0049c01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0608350-00
Chr06	irgsp1_rep	five_prime_UTR	24207063	24207176	.	+	.	Parent=Os06t0608350-00
Chr06	irgsp1_rep	five_prime_UTR	24207267	24207483	.	+	.	Parent=Os06t0608350-00
Chr06	irgsp1_rep	five_prime_UTR	24207572	24207661	.	+	.	Parent=Os06t0608350-00
Chr06	irgsp1_rep	five_prime_UTR	24207763	24207972	.	+	.	Parent=Os06t0608350-00
Chr06	irgsp1_rep	five_prime_UTR	24208060	24208158	.	+	.	Parent=Os06t0608350-00
Chr06	irgsp1_rep	five_prime_UTR	24208603	24208740	.	+	.	Parent=Os06t0608350-00
Chr06	irgsp1_rep	five_prime_UTR	24208846	24208952	.	+	.	Parent=Os06t0608350-00
Chr06	irgsp1_rep	five_prime_UTR	24209035	24210213	.	+	.	Parent=Os06t0608350-00
Chr06	irgsp1_rep	five_prime_UTR	24210298	24210378	.	+	.	Parent=Os06t0608350-00
Chr06	irgsp1_rep	five_prime_UTR	24211686	24211793	.	+	.	Parent=Os06t0608350-00
Chr06	irgsp1_rep	CDS	24211794	24212072	.	+	0	Parent=Os06t0608350-00
Chr06	irgsp1_rep	three_prime_UTR	24212073	24212573	.	+	.	Parent=Os06t0608350-00
Chr06	irgsp1_rep	mRNA	24215336	24217150	.	+	.	ID=Os06t0608401-01;Name=Os06t0608401-01;Locus_id=Os06g0608401;Note=Similar to MADS-box transcription factor 30.;Transcript_evidence=AK242701 (DDBJ%2C Best hit);ORF_evidence=Q655V4 (UniProt);NIAS_FLcDNA=J090038P19;TENOR=Os06t0608401-01;KEGG=Os06t0608401-01
Chr06	irgsp1_rep	five_prime_UTR	24215336	24215979	.	+	.	Parent=Os06t0608401-01
Chr06	irgsp1_rep	five_prime_UTR	24216384	24216455	.	+	.	Parent=Os06t0608401-01
Chr06	irgsp1_rep	CDS	24216456	24216552	.	+	0	Parent=Os06t0608401-01
Chr06	irgsp1_rep	CDS	24216797	24216837	.	+	2	Parent=Os06t0608401-01
Chr06	irgsp1_rep	three_prime_UTR	24216838	24217150	.	+	.	Parent=Os06t0608401-01
Chr06	irgsp1_rep	mRNA	24218379	24223089	.	+	.	ID=Os06t0608500-01;Name=Os06t0608500-01;Locus_id=Os06g0608500;Oryzabase Gene Symbol Synonym(s)=OsSNF7%2C SNF7%2C OsSnf7%2C Snf7;Oryzabase Gene Name Synonym(s)=SNF7 component of ESCRT-III complex%2C ESCRT-III complex SNF7 component;Note=Snf7 family protein.;Transcript_evidence=AK060097 (DDBJ%2C Best hit),AK070667 (DDBJ%2C Best hit);ORF_evidence=C0J9Y0 (UniProt);GO=Biological Process: protein transport (GO:0015031);InterPro=Snf7 (IPR005024);NIAS_FLcDNA=006-307-G05,J023056L17;Oryzabase=21414;Expression=AK060097;TENOR=Os06t0608500-01;KEGG=Os06t0608500-01
Chr06	irgsp1_rep	five_prime_UTR	24218379	24218616	.	+	.	Parent=Os06t0608500-01
Chr06	irgsp1_rep	CDS	24218617	24218703	.	+	0	Parent=Os06t0608500-01
Chr06	irgsp1_rep	CDS	24220412	24220511	.	+	0	Parent=Os06t0608500-01
Chr06	irgsp1_rep	CDS	24221337	24221422	.	+	2	Parent=Os06t0608500-01
Chr06	irgsp1_rep	CDS	24221519	24221610	.	+	0	Parent=Os06t0608500-01
Chr06	irgsp1_rep	CDS	24222311	24222425	.	+	1	Parent=Os06t0608500-01
Chr06	irgsp1_rep	CDS	24222499	24222681	.	+	0	Parent=Os06t0608500-01
Chr06	irgsp1_rep	three_prime_UTR	24222682	24222685	.	+	.	Parent=Os06t0608500-01
Chr06	irgsp1_rep	three_prime_UTR	24222856	24223089	.	+	.	Parent=Os06t0608500-01
Chr06	irgsp1_rep	mRNA	24222336	24222696	.	-	.	ID=Os06t0608550-00;Name=Os06t0608550-00;Locus_id=Os06g0608550;Note=Hypothetical protein.;Transcript_evidence=BT016875 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0608550-00
Chr06	irgsp1_rep	five_prime_UTR	24222696	24222696	.	-	.	Parent=Os06t0608550-00
Chr06	irgsp1_rep	CDS	24222477	24222695	.	-	0	Parent=Os06t0608550-00
Chr06	irgsp1_rep	CDS	24222397	24222405	.	-	0	Parent=Os06t0608550-00
Chr06	irgsp1_rep	three_prime_UTR	24222336	24222396	.	-	.	Parent=Os06t0608550-00
Chr06	irgsp1_rep	mRNA	24223783	24226794	.	+	.	ID=Os06t0608600-01;Name=Os06t0608600-01;Locus_id=Os06g0608600;Note=SFT2-like family protein.;Transcript_evidence=AK061418 (DDBJ%2C Best hit);ORF_evidence=NP_001150517.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: integral to membrane (GO:0016021);InterPro=Vesicle transport protein%2C Got1/SFT2-like (IPR007305),Vesicle transport protein%2C SFT2-like (IPR011691);NIAS_FLcDNA=006-306-E09;Expression=AK061418;TENOR=Os06t0608600-01;KEGG=Os06t0608600-01
Chr06	irgsp1_rep	five_prime_UTR	24223783	24223849	.	+	.	Parent=Os06t0608600-01
Chr06	irgsp1_rep	CDS	24223850	24224061	.	+	0	Parent=Os06t0608600-01
Chr06	irgsp1_rep	CDS	24225020	24225287	.	+	1	Parent=Os06t0608600-01
Chr06	irgsp1_rep	CDS	24225842	24225946	.	+	0	Parent=Os06t0608600-01
Chr06	irgsp1_rep	CDS	24226288	24226398	.	+	0	Parent=Os06t0608600-01
Chr06	irgsp1_rep	three_prime_UTR	24226399	24226794	.	+	.	Parent=Os06t0608600-01
Chr06	irgsp1_rep	mRNA	24223816	24226742	.	+	.	ID=Os06t0608600-02;Name=Os06t0608600-02;Locus_id=Os06g0608600;Note=SFT2-like family protein.;Transcript_evidence=AK104440 (DDBJ%2C Best hit);ORF_evidence=NP_001150517.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: integral to membrane (GO:0016021);InterPro=Vesicle transport protein%2C Got1/SFT2-like (IPR007305),Vesicle transport protein%2C SFT2-like (IPR011691);NIAS_FLcDNA=006-209-H05;Expression=AK104440;TENOR=Os06t0608600-02;KEGG=Os06t0608600-02
Chr06	irgsp1_rep	five_prime_UTR	24223816	24223849	.	+	.	Parent=Os06t0608600-02
Chr06	irgsp1_rep	CDS	24223850	24224061	.	+	0	Parent=Os06t0608600-02
Chr06	irgsp1_rep	CDS	24225020	24225287	.	+	1	Parent=Os06t0608600-02
Chr06	irgsp1_rep	CDS	24225842	24225946	.	+	0	Parent=Os06t0608600-02
Chr06	irgsp1_rep	CDS	24226288	24226398	.	+	0	Parent=Os06t0608600-02
Chr06	irgsp1_rep	three_prime_UTR	24226399	24226742	.	+	.	Parent=Os06t0608600-02
Chr06	irgsp1_rep	mRNA	24227264	24229207	.	+	.	ID=Os06t0608700-01;Name=Os06t0608700-01;Locus_id=Os06g0608700;CGSNL Gene Symbol=YGDL1;CGSNL Gene Name=YELLOW GREEN AND DROOPY LEAF-1;Oryzabase Gene Symbol Synonym(s)=OsAld-Y%2C Ald-Y%2C YGDL-1;Oryzabase Gene Name Synonym(s)="Fru-1%2C 6-bisphosphatase"%2C "fructose-1%2C 6-bisphosphate aldolase Y"%2C yellow green and droopy leaf-1%2C YELLOW GREEN AND DROOPY LEAF 1%2C "fructose-bisphosphate aldolase%2C cytoplasmic isozyme 1";Note=Similar to Fructose-bisphosphate aldolase%2C cytoplasmic isozyme (EC 4.1.2.13).;Transcript_evidence=AK064989 (DDBJ%2C Best hit);ORF_evidence=C0J9Y2 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: fructose-bisphosphate aldolase activity (GO:0004332);InterPro=Fructose-bisphosphate aldolase%2C class-I (IPR000741),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J013001D08;Oryzabase=12456;Expression=AK064989;TENOR=Os06t0608700-01;KEGG=Os06t0608700-01 (EC:4.1.2.13)
Chr06	irgsp1_rep	five_prime_UTR	24227264	24227393	.	+	.	Parent=Os06t0608700-01
Chr06	irgsp1_rep	CDS	24227394	24227421	.	+	0	Parent=Os06t0608700-01
Chr06	irgsp1_rep	CDS	24227816	24228501	.	+	2	Parent=Os06t0608700-01
Chr06	irgsp1_rep	CDS	24228589	24228951	.	+	0	Parent=Os06t0608700-01
Chr06	irgsp1_rep	three_prime_UTR	24228952	24229207	.	+	.	Parent=Os06t0608700-01
Chr06	irgsp1_rep	mRNA	24227319	24229200	.	+	.	ID=Os06t0608700-02;Name=Os06t0608700-02;Locus_id=Os06g0608700;CGSNL Gene Symbol=YGDL1;CGSNL Gene Name=YELLOW GREEN AND DROOPY LEAF-1;Oryzabase Gene Symbol Synonym(s)=OsAld-Y%2C Ald-Y%2C YGDL-1;Oryzabase Gene Name Synonym(s)="Fru-1%2C 6-bisphosphatase"%2C "fructose-1%2C 6-bisphosphate aldolase Y"%2C yellow green and droopy leaf-1%2C YELLOW GREEN AND DROOPY LEAF 1%2C "fructose-bisphosphate aldolase%2C cytoplasmic isozyme 1";Note=Similar to Fructose-bisphosphate aldolase%2C cytoplasmic isozyme (EC 4.1.2.13).;Transcript_evidence=AK104381 (DDBJ%2C Best hit),AK058288 (DDBJ%2C Best hit),AK058302 (DDBJ%2C Best hit);ORF_evidence=C0J9Y2 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: fructose-bisphosphate aldolase activity (GO:0004332);InterPro=Fructose-bisphosphate aldolase%2C class-I (IPR000741),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=001-035-H07,001-013-E04,001-013-G04;Oryzabase=12456;TENOR=Os06t0608700-02
Chr06	irgsp1_rep	five_prime_UTR	24227319	24227393	.	+	.	Parent=Os06t0608700-02
Chr06	irgsp1_rep	CDS	24227394	24227421	.	+	0	Parent=Os06t0608700-02
Chr06	irgsp1_rep	CDS	24227816	24228501	.	+	2	Parent=Os06t0608700-02
Chr06	irgsp1_rep	CDS	24228589	24228951	.	+	0	Parent=Os06t0608700-02
Chr06	irgsp1_rep	three_prime_UTR	24228952	24229200	.	+	.	Parent=Os06t0608700-02
Chr06	irgsp1_rep	mRNA	24227136	24229290	.	+	.	ID=Os06t0608700-03;Name=Os06t0608700-03;Locus_id=Os06g0608700;RAP-DB Gene Symbol Synonym(s)=OsAld-Y%2C YGDL-1%2C YGDL1;RAP-DB Gene Name Synonym(s)=YELLOW GREEN AND DROOPY LEAF-1%2C "fructose-1%2C6-bisphosphate aldolase Y"%2C yellow green and droopy leaf-1;CGSNL Gene Symbol=YGDL1;CGSNL Gene Name=YELLOW GREEN AND DROOPY LEAF-1;Oryzabase Gene Symbol Synonym(s)=OsAld-Y%2C Ald-Y%2C YGDL-1;Oryzabase Gene Name Synonym(s)="Fru-1%2C 6-bisphosphatase"%2C "fructose-1%2C 6-bisphosphate aldolase Y"%2C yellow green and droopy leaf-1%2C YELLOW GREEN AND DROOPY LEAF 1%2C "fructose-bisphosphate aldolase%2C cytoplasmic isozyme 1";Note=Fructose-1%2C6-bisphosphate aldolase (EC:4.1.2.13)%2C Chlorophyll biosynthesis%2C Chloroplast development%2C Sugar metabolism;Transcript_evidence=Inferred from literature;ORF_evidence=Q69V57;GO=Biological Process: glycolytic process (GO:0006096),Molecular Function: catalytic activity (GO:0003824),Molecular Function: fructose-bisphosphate aldolase activity (GO:0004332);InterPro=Fructose-bisphosphate aldolase%2C class-I (IPR000741),Aldolase-type TIM barrel (IPR013785),Fructose-bisphosphate aldolase class-I active site (IPR029768);Manual Curation=June 27%2C 2017;Literature_PMID=27457997;Oryzabase=12456;Subcellular location=peroxisome (GO:0005777)
Chr06	irgsp1_rep	five_prime_UTR	24227136	24227231	.	+	.	Parent=Os06t0608700-03
Chr06	irgsp1_rep	five_prime_UTR	24227331	24227393	.	+	.	Parent=Os06t0608700-03
Chr06	irgsp1_rep	CDS	24227394	24227421	.	+	0	Parent=Os06t0608700-03
Chr06	irgsp1_rep	CDS	24227816	24228501	.	+	2	Parent=Os06t0608700-03
Chr06	irgsp1_rep	CDS	24228589	24228951	.	+	0	Parent=Os06t0608700-03
Chr06	irgsp1_rep	three_prime_UTR	24228952	24229290	.	+	.	Parent=Os06t0608700-03
Chr06	irgsp1_rep	mRNA	24229386	24234690	.	-	.	ID=Os06t0608800-01;Name=Os06t0608800-01;Locus_id=Os06g0608800;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK067750 (DDBJ%2C Best hit);ORF_evidence=C0J9Y3 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),von Willebrand factor%2C type A (IPR002035),Copine (IPR010734),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J013115P09;Expression=AK067750;TENOR=Os06t0608800-01;KEGG=Os06t0608800-01
Chr06	irgsp1_rep	five_prime_UTR	24234364	24234690	.	-	.	Parent=Os06t0608800-01
Chr06	irgsp1_rep	five_prime_UTR	24233669	24233689	.	-	.	Parent=Os06t0608800-01
Chr06	irgsp1_rep	CDS	24233441	24233668	.	-	0	Parent=Os06t0608800-01
Chr06	irgsp1_rep	CDS	24232664	24232748	.	-	0	Parent=Os06t0608800-01
Chr06	irgsp1_rep	CDS	24231891	24232031	.	-	2	Parent=Os06t0608800-01
Chr06	irgsp1_rep	CDS	24231667	24231780	.	-	2	Parent=Os06t0608800-01
Chr06	irgsp1_rep	CDS	24231425	24231522	.	-	2	Parent=Os06t0608800-01
Chr06	irgsp1_rep	CDS	24231195	24231274	.	-	0	Parent=Os06t0608800-01
Chr06	irgsp1_rep	CDS	24230991	24231096	.	-	1	Parent=Os06t0608800-01
Chr06	irgsp1_rep	CDS	24230770	24230897	.	-	0	Parent=Os06t0608800-01
Chr06	irgsp1_rep	CDS	24230438	24230663	.	-	1	Parent=Os06t0608800-01
Chr06	irgsp1_rep	CDS	24229849	24229905	.	-	0	Parent=Os06t0608800-01
Chr06	irgsp1_rep	CDS	24229683	24229763	.	-	0	Parent=Os06t0608800-01
Chr06	irgsp1_rep	three_prime_UTR	24229386	24229682	.	-	.	Parent=Os06t0608800-01
Chr06	irgsp1_rep	mRNA	24229385	24234511	.	-	.	ID=Os06t0608800-02;Name=Os06t0608800-02;Locus_id=Os06g0608800;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK100593 (DDBJ%2C Best hit);ORF_evidence=C0J9Y3 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),von Willebrand factor%2C type A (IPR002035),Copine (IPR010734),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J023106M02;Expression=AK100593;TENOR=Os06t0608800-02;KEGG=Os06t0608800-02
Chr06	irgsp1_rep	five_prime_UTR	24234085	24234511	.	-	.	Parent=Os06t0608800-02
Chr06	irgsp1_rep	five_prime_UTR	24233669	24233689	.	-	.	Parent=Os06t0608800-02
Chr06	irgsp1_rep	CDS	24233441	24233668	.	-	0	Parent=Os06t0608800-02
Chr06	irgsp1_rep	CDS	24232664	24232748	.	-	0	Parent=Os06t0608800-02
Chr06	irgsp1_rep	CDS	24231891	24232031	.	-	2	Parent=Os06t0608800-02
Chr06	irgsp1_rep	CDS	24231667	24231780	.	-	2	Parent=Os06t0608800-02
Chr06	irgsp1_rep	CDS	24231425	24231522	.	-	2	Parent=Os06t0608800-02
Chr06	irgsp1_rep	CDS	24231195	24231274	.	-	0	Parent=Os06t0608800-02
Chr06	irgsp1_rep	CDS	24230991	24231096	.	-	1	Parent=Os06t0608800-02
Chr06	irgsp1_rep	CDS	24230770	24230897	.	-	0	Parent=Os06t0608800-02
Chr06	irgsp1_rep	CDS	24230438	24230663	.	-	1	Parent=Os06t0608800-02
Chr06	irgsp1_rep	CDS	24229849	24229905	.	-	0	Parent=Os06t0608800-02
Chr06	irgsp1_rep	CDS	24229683	24229763	.	-	0	Parent=Os06t0608800-02
Chr06	irgsp1_rep	three_prime_UTR	24229385	24229682	.	-	.	Parent=Os06t0608800-02
Chr06	irgsp1_rep	mRNA	24229366	24234497	.	-	.	ID=Os06t0608800-03;Name=Os06t0608800-03;Locus_id=Os06g0608800;Note=Similar to Copine-1.;Transcript_evidence=AK104337 (DDBJ%2C Best hit);ORF_evidence=C0J9Y3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=von Willebrand factor%2C type A (IPR002035),Copine (IPR010734);NIAS_FLcDNA=001-033-D06;Expression=AK104337;TENOR=Os06t0608800-03;KEGG=Os06t0608800-03
Chr06	irgsp1_rep	five_prime_UTR	24234364	24234497	.	-	.	Parent=Os06t0608800-03
Chr06	irgsp1_rep	five_prime_UTR	24233669	24233689	.	-	.	Parent=Os06t0608800-03
Chr06	irgsp1_rep	CDS	24233441	24233668	.	-	0	Parent=Os06t0608800-03
Chr06	irgsp1_rep	CDS	24232664	24232748	.	-	0	Parent=Os06t0608800-03
Chr06	irgsp1_rep	CDS	24231891	24232031	.	-	2	Parent=Os06t0608800-03
Chr06	irgsp1_rep	CDS	24231667	24231780	.	-	2	Parent=Os06t0608800-03
Chr06	irgsp1_rep	CDS	24231425	24231522	.	-	2	Parent=Os06t0608800-03
Chr06	irgsp1_rep	CDS	24231195	24231274	.	-	0	Parent=Os06t0608800-03
Chr06	irgsp1_rep	CDS	24230991	24231096	.	-	1	Parent=Os06t0608800-03
Chr06	irgsp1_rep	CDS	24230770	24230897	.	-	0	Parent=Os06t0608800-03
Chr06	irgsp1_rep	CDS	24230396	24230663	.	-	1	Parent=Os06t0608800-03
Chr06	irgsp1_rep	three_prime_UTR	24229849	24230395	.	-	.	Parent=Os06t0608800-03
Chr06	irgsp1_rep	three_prime_UTR	24229366	24229763	.	-	.	Parent=Os06t0608800-03
Chr06	irgsp1_rep	mRNA	24229354	24234456	.	-	.	ID=Os06t0608800-04;Name=Os06t0608800-04;Locus_id=Os06g0608800;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK099238 (DDBJ%2C Best hit);ORF_evidence=C0J9Y3 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),von Willebrand factor%2C type A (IPR002035),Copine (IPR010734),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J013112G09;Expression=AK099238;TENOR=Os06t0608800-04;KEGG=Os06t0608800-04
Chr06	irgsp1_rep	five_prime_UTR	24234364	24234456	.	-	.	Parent=Os06t0608800-04
Chr06	irgsp1_rep	five_prime_UTR	24233669	24233689	.	-	.	Parent=Os06t0608800-04
Chr06	irgsp1_rep	CDS	24233441	24233668	.	-	0	Parent=Os06t0608800-04
Chr06	irgsp1_rep	CDS	24232664	24232748	.	-	0	Parent=Os06t0608800-04
Chr06	irgsp1_rep	CDS	24231891	24232031	.	-	2	Parent=Os06t0608800-04
Chr06	irgsp1_rep	CDS	24231667	24231780	.	-	2	Parent=Os06t0608800-04
Chr06	irgsp1_rep	CDS	24231425	24231522	.	-	2	Parent=Os06t0608800-04
Chr06	irgsp1_rep	CDS	24231195	24231274	.	-	0	Parent=Os06t0608800-04
Chr06	irgsp1_rep	CDS	24230991	24231096	.	-	1	Parent=Os06t0608800-04
Chr06	irgsp1_rep	CDS	24230770	24230897	.	-	0	Parent=Os06t0608800-04
Chr06	irgsp1_rep	CDS	24230438	24230663	.	-	1	Parent=Os06t0608800-04
Chr06	irgsp1_rep	CDS	24229849	24229905	.	-	0	Parent=Os06t0608800-04
Chr06	irgsp1_rep	CDS	24229683	24229763	.	-	0	Parent=Os06t0608800-04
Chr06	irgsp1_rep	three_prime_UTR	24229354	24229682	.	-	.	Parent=Os06t0608800-04
Chr06	irgsp1_rep	mRNA	24263271	24264003	.	+	.	ID=Os06t0609400-01;Name=Os06t0609400-01;Locus_id=Os06g0609400;Oryzabase Gene Symbol Synonym(s)=OsSub50%2C SUB50;Oryzabase Gene Name Synonym(s)=Subtilisin 50%2C SUBTILISIN 50;Note=Peptidase S8%2C subtilisin-related domain containing protein.;Transcript_evidence=AK109185 (DDBJ%2C Best hit);ORF_evidence=C0JA17 (UniProt);NIAS_FLcDNA=002-156-A08;Oryzabase=20134;Expression=AK109185;TENOR=Os06t0609400-01;KEGG=Os06t0609400-01
Chr06	irgsp1_rep	five_prime_UTR	24263271	24263272	.	+	.	Parent=Os06t0609400-01
Chr06	irgsp1_rep	CDS	24263273	24263788	.	+	0	Parent=Os06t0609400-01
Chr06	irgsp1_rep	three_prime_UTR	24263789	24264003	.	+	.	Parent=Os06t0609400-01
Chr06	irgsp1_rep	mRNA	24267042	24267979	.	+	.	ID=Os06t0609450-01;Name=Os06t0609450-01;Locus_id=Os06g0609450;Note=Similar to ZAC.;Transcript_evidence=AK287598 (DDBJ%2C Best hit);ORF_evidence=C0JA35 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=J065050G10;TENOR=Os06t0609450-01;KEGG=Os06t0609450-01
Chr06	irgsp1_rep	five_prime_UTR	24267042	24267043	.	+	.	Parent=Os06t0609450-01
Chr06	irgsp1_rep	CDS	24267044	24267082	.	+	0	Parent=Os06t0609450-01
Chr06	irgsp1_rep	CDS	24267157	24267252	.	+	0	Parent=Os06t0609450-01
Chr06	irgsp1_rep	CDS	24267384	24267665	.	+	0	Parent=Os06t0609450-01
Chr06	irgsp1_rep	three_prime_UTR	24267666	24267979	.	+	.	Parent=Os06t0609450-01
Chr06	irgsp1_rep	mRNA	24268909	24273342	.	+	.	ID=Os06t0609500-01;Name=Os06t0609500-01;Locus_id=Os06g0609500;Note=Homeodomain-like containing protein.;Transcript_evidence=AK071731 (DDBJ%2C Best hit);ORF_evidence=C0JA19 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J023114F03;Expression=AK071731;TENOR=Os06t0609500-01;KEGG=Os06t0609500-01
Chr06	irgsp1_rep	five_prime_UTR	24268909	24269058	.	+	.	Parent=Os06t0609500-01
Chr06	irgsp1_rep	five_prime_UTR	24270223	24270232	.	+	.	Parent=Os06t0609500-01
Chr06	irgsp1_rep	CDS	24270233	24270446	.	+	0	Parent=Os06t0609500-01
Chr06	irgsp1_rep	CDS	24270587	24270663	.	+	2	Parent=Os06t0609500-01
Chr06	irgsp1_rep	CDS	24270755	24270797	.	+	0	Parent=Os06t0609500-01
Chr06	irgsp1_rep	CDS	24270883	24270940	.	+	2	Parent=Os06t0609500-01
Chr06	irgsp1_rep	CDS	24272023	24272090	.	+	1	Parent=Os06t0609500-01
Chr06	irgsp1_rep	CDS	24272541	24273070	.	+	2	Parent=Os06t0609500-01
Chr06	irgsp1_rep	three_prime_UTR	24273071	24273342	.	+	.	Parent=Os06t0609500-01
Chr06	irgsp1_rep	mRNA	24273302	24275953	.	-	.	ID=Os06t0609600-02;Name=Os06t0609600-02;Locus_id=Os06g0609600;Note=EF-Hand type domain containing protein.;Transcript_evidence=AK072533 (DDBJ%2C Best hit),AK099872 (DDBJ%2C Best hit);ORF_evidence=C0JA20 (UniProt);NIAS_FLcDNA=J023127M12,J013111G10;Expression=AK072533;TENOR=Os06t0609600-02;KEGG=Os06t0609600-02
Chr06	irgsp1_rep	five_prime_UTR	24275840	24275953	.	-	.	Parent=Os06t0609600-02
Chr06	irgsp1_rep	five_prime_UTR	24275159	24275212	.	-	.	Parent=Os06t0609600-02
Chr06	irgsp1_rep	CDS	24274963	24275158	.	-	0	Parent=Os06t0609600-02
Chr06	irgsp1_rep	CDS	24274382	24274581	.	-	2	Parent=Os06t0609600-02
Chr06	irgsp1_rep	CDS	24273956	24274130	.	-	0	Parent=Os06t0609600-02
Chr06	irgsp1_rep	CDS	24273638	24273741	.	-	2	Parent=Os06t0609600-02
Chr06	irgsp1_rep	three_prime_UTR	24273302	24273637	.	-	.	Parent=Os06t0609600-02
Chr06	irgsp1_rep	mRNA	24277407	24282486	.	-	.	ID=Os06t0609700-01;Name=Os06t0609700-01;Locus_id=Os06g0609700;Note=Esterase/lipase/thioesterase domain containing protein.;Transcript_evidence=AK067228 (DDBJ%2C Best hit);ORF_evidence=C0JA21 (UniProt);NIAS_FLcDNA=J013098M22;Expression=AK067228;TENOR=Os06t0609700-01;KEGG=Os06t0609700-01
Chr06	irgsp1_rep	five_prime_UTR	24282019	24282486	.	-	.	Parent=Os06t0609700-01
Chr06	irgsp1_rep	CDS	24281978	24282018	.	-	0	Parent=Os06t0609700-01
Chr06	irgsp1_rep	CDS	24281420	24281501	.	-	1	Parent=Os06t0609700-01
Chr06	irgsp1_rep	CDS	24281211	24281314	.	-	0	Parent=Os06t0609700-01
Chr06	irgsp1_rep	CDS	24280857	24280983	.	-	1	Parent=Os06t0609700-01
Chr06	irgsp1_rep	CDS	24280678	24280772	.	-	0	Parent=Os06t0609700-01
Chr06	irgsp1_rep	CDS	24280308	24280431	.	-	1	Parent=Os06t0609700-01
Chr06	irgsp1_rep	CDS	24279654	24279734	.	-	0	Parent=Os06t0609700-01
Chr06	irgsp1_rep	CDS	24279457	24279555	.	-	0	Parent=Os06t0609700-01
Chr06	irgsp1_rep	CDS	24279174	24279359	.	-	0	Parent=Os06t0609700-01
Chr06	irgsp1_rep	CDS	24279009	24279096	.	-	0	Parent=Os06t0609700-01
Chr06	irgsp1_rep	CDS	24278849	24278919	.	-	2	Parent=Os06t0609700-01
Chr06	irgsp1_rep	CDS	24278710	24278778	.	-	0	Parent=Os06t0609700-01
Chr06	irgsp1_rep	CDS	24278312	24278455	.	-	0	Parent=Os06t0609700-01
Chr06	irgsp1_rep	CDS	24277867	24278064	.	-	0	Parent=Os06t0609700-01
Chr06	irgsp1_rep	three_prime_UTR	24277407	24277866	.	-	.	Parent=Os06t0609700-01
Chr06	irgsp1_rep	mRNA	24277865	24282369	.	+	.	ID=Os06t0609775-00;Name=Os06t0609775-00;Locus_id=Os06g0609775;Note=Hypothetical protein.;Transcript_evidence=tplb0061n07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0609775-00
Chr06	irgsp1_rep	five_prime_UTR	24277865	24278069	.	+	.	Parent=Os06t0609775-00
Chr06	irgsp1_rep	five_prime_UTR	24278329	24278477	.	+	.	Parent=Os06t0609775-00
Chr06	irgsp1_rep	five_prime_UTR	24278803	24278919	.	+	.	Parent=Os06t0609775-00
Chr06	irgsp1_rep	five_prime_UTR	24279009	24279121	.	+	.	Parent=Os06t0609775-00
Chr06	irgsp1_rep	five_prime_UTR	24279217	24279353	.	+	.	Parent=Os06t0609775-00
Chr06	irgsp1_rep	five_prime_UTR	24279451	24279557	.	+	.	Parent=Os06t0609775-00
Chr06	irgsp1_rep	five_prime_UTR	24279649	24279732	.	+	.	Parent=Os06t0609775-00
Chr06	irgsp1_rep	five_prime_UTR	24280306	24280431	.	+	.	Parent=Os06t0609775-00
Chr06	irgsp1_rep	five_prime_UTR	24280678	24280772	.	+	.	Parent=Os06t0609775-00
Chr06	irgsp1_rep	five_prime_UTR	24280857	24280982	.	+	.	Parent=Os06t0609775-00
Chr06	irgsp1_rep	five_prime_UTR	24281210	24281296	.	+	.	Parent=Os06t0609775-00
Chr06	irgsp1_rep	five_prime_UTR	24281406	24281491	.	+	.	Parent=Os06t0609775-00
Chr06	irgsp1_rep	five_prime_UTR	24281969	24281989	.	+	.	Parent=Os06t0609775-00
Chr06	irgsp1_rep	CDS	24281990	24282369	.	+	0	Parent=Os06t0609775-00
Chr06	irgsp1_rep	mRNA	24288211	24292710	.	+	.	ID=Os06t0609800-01;Name=Os06t0609800-01;Locus_id=Os06g0609800;Note=Conserved hypothetical protein.;Transcript_evidence=AK065646 (DDBJ%2C Best hit);ORF_evidence=C0JA22 (UniProt);NIAS_FLcDNA=J013038C03;TENOR=Os06t0609800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	24288211	24288211	.	+	.	Parent=Os06t0609800-01
Chr06	irgsp1_rep	CDS	24288212	24288616	.	+	0	Parent=Os06t0609800-01
Chr06	irgsp1_rep	CDS	24289810	24289974	.	+	0	Parent=Os06t0609800-01
Chr06	irgsp1_rep	CDS	24290668	24290757	.	+	0	Parent=Os06t0609800-01
Chr06	irgsp1_rep	CDS	24290839	24290937	.	+	0	Parent=Os06t0609800-01
Chr06	irgsp1_rep	CDS	24291236	24291340	.	+	0	Parent=Os06t0609800-01
Chr06	irgsp1_rep	CDS	24291438	24291578	.	+	0	Parent=Os06t0609800-01
Chr06	irgsp1_rep	CDS	24291661	24291948	.	+	0	Parent=Os06t0609800-01
Chr06	irgsp1_rep	CDS	24292188	24292478	.	+	0	Parent=Os06t0609800-01
Chr06	irgsp1_rep	three_prime_UTR	24292479	24292710	.	+	.	Parent=Os06t0609800-01
Chr06	irgsp1_rep	mRNA	24291441	24292740	.	+	.	ID=Os06t0609800-02;Name=Os06t0609800-02;Locus_id=Os06g0609800;Note=Hypothetical conserved gene.;Transcript_evidence=AK058339 (DDBJ%2C Best hit);ORF_evidence=B8B4K1 (UniProt);NIAS_FLcDNA=001-014-D06;Expression=AK058339;TENOR=Os06t0609800-02;KEGG=Os06t0609800-02
Chr06	irgsp1_rep	CDS	24291441	24291578	.	+	0	Parent=Os06t0609800-02
Chr06	irgsp1_rep	CDS	24291661	24291948	.	+	0	Parent=Os06t0609800-02
Chr06	irgsp1_rep	CDS	24292188	24292478	.	+	0	Parent=Os06t0609800-02
Chr06	irgsp1_rep	three_prime_UTR	24292479	24292740	.	+	.	Parent=Os06t0609800-02
Chr06	irgsp1_rep	mRNA	24288206	24292483	.	-	.	ID=Os06t0609850-00;Name=Os06t0609850-00;Locus_id=Os06g0609850;Note=Hypothetical protein.;Transcript_evidence=tplb0052d12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0609850-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	24292199	24292483	.	-	.	Parent=Os06t0609850-00
Chr06	irgsp1_rep	five_prime_UTR	24291661	24291964	.	-	.	Parent=Os06t0609850-00
Chr06	irgsp1_rep	five_prime_UTR	24291436	24291578	.	-	.	Parent=Os06t0609850-00
Chr06	irgsp1_rep	five_prime_UTR	24291244	24291338	.	-	.	Parent=Os06t0609850-00
Chr06	irgsp1_rep	five_prime_UTR	24290842	24290941	.	-	.	Parent=Os06t0609850-00
Chr06	irgsp1_rep	five_prime_UTR	24290654	24290748	.	-	.	Parent=Os06t0609850-00
Chr06	irgsp1_rep	five_prime_UTR	24289824	24289970	.	-	.	Parent=Os06t0609850-00
Chr06	irgsp1_rep	CDS	24289805	24289823	.	-	0	Parent=Os06t0609850-00
Chr06	irgsp1_rep	CDS	24288206	24288641	.	-	2	Parent=Os06t0609850-00
Chr06	irgsp1_rep	mRNA	24293278	24295700	.	+	.	ID=Os06t0609900-01;Name=Os06t0609900-01;Locus_id=Os06g0609900;Note=Conserved hypothetical protein.;Transcript_evidence=AK109324 (DDBJ%2C Best hit);ORF_evidence=C0JA07 (UniProt);NIAS_FLcDNA=002-188-H06;Expression=AK109324;TENOR=Os06t0609900-01;KEGG=Os06t0609900-01
Chr06	irgsp1_rep	five_prime_UTR	24293278	24293575	.	+	.	Parent=Os06t0609900-01
Chr06	irgsp1_rep	CDS	24293576	24293743	.	+	0	Parent=Os06t0609900-01
Chr06	irgsp1_rep	CDS	24295185	24295449	.	+	0	Parent=Os06t0609900-01
Chr06	irgsp1_rep	CDS	24295545	24295561	.	+	2	Parent=Os06t0609900-01
Chr06	irgsp1_rep	three_prime_UTR	24295562	24295700	.	+	.	Parent=Os06t0609900-01
Chr06	irgsp1_rep	mRNA	24296662	24297321	.	+	.	ID=Os06t0610000-01;Name=Os06t0610000-01;Locus_id=Os06g0610000;Note=Conserved hypothetical protein.;Transcript_evidence=AK108448 (DDBJ%2C Best hit);ORF_evidence=A2YEX7 (UniProt);NIAS_FLcDNA=002-143-C06;Expression=AK108448;TENOR=Os06t0610000-01;KEGG=Os06t0610000-01
Chr06	irgsp1_rep	five_prime_UTR	24296662	24296736	.	+	.	Parent=Os06t0610000-01
Chr06	irgsp1_rep	CDS	24296737	24297081	.	+	0	Parent=Os06t0610000-01
Chr06	irgsp1_rep	three_prime_UTR	24297082	24297321	.	+	.	Parent=Os06t0610000-01
Chr06	irgsp1_rep	mRNA	24297470	24299754	.	-	.	ID=Os06t0610100-00;Name=Os06t0610100-00;Locus_id=Os06g0610100;Note=Hypothetical conserved gene.;Transcript_evidence=EU953011 (DDBJ);ORF_evidence=B6TPU4 (UniProt);GO=Biological Process: one-carbon metabolic process (GO:0006730),Molecular Function: carbonate dehydratase activity (GO:0004089),Molecular Function: zinc ion binding (GO:0008270);InterPro=Carbonic anhydrase%2C alpha-class%2C catalytic domain (IPR001148),Carbonic anhydrase%2C alpha-class%2C conserved site (IPR018338),Carbonic anhydrase%2C alpha-class (IPR023561);TENOR=Os06t0610100-00;KEGG=Os06t0610100-00 (EC:4.2.1.1)
Chr06	irgsp1_rep	CDS	24299464	24299754	.	-	0	Parent=Os06t0610100-00
Chr06	irgsp1_rep	CDS	24298919	24299347	.	-	0	Parent=Os06t0610100-00
Chr06	irgsp1_rep	CDS	24297789	24297898	.	-	0	Parent=Os06t0610100-00
Chr06	irgsp1_rep	CDS	24297634	24297685	.	-	1	Parent=Os06t0610100-00
Chr06	irgsp1_rep	CDS	24297470	24297544	.	-	0	Parent=Os06t0610100-00
Chr06	irgsp1_rep	mRNA	24312470	24313095	.	+	.	ID=Os06t0610300-01;Name=Os06t0610300-01;Locus_id=Os06g0610300;CGSNL Gene Symbol=MOC1;CGSNL Gene Name=MONOCULM 1;Oryzabase Gene Symbol Synonym(s)=moc1%2C OsMOC1%2C OsGRAS-33%2C OsGRAS33%2C GRAS-33%2C GRAS33;Oryzabase Gene Name Synonym(s)=monoculm1%2C Monoculm 1%2C Protein MONOCULM 1%2C GRAS protein 33;Note=Conserved hypothetical protein.;Transcript_evidence=AK062635 (DDBJ%2C Best hit);ORF_evidence=C0JA10 (UniProt);NIAS_FLcDNA=001-105-D01;Oryzabase=5004;Expression=AK062635;TENOR=Os06t0610300-01;KEGG=Os06t0610300-01
Chr06	irgsp1_rep	five_prime_UTR	24312470	24312726	.	+	.	Parent=Os06t0610300-01
Chr06	irgsp1_rep	CDS	24312727	24312906	.	+	0	Parent=Os06t0610300-01
Chr06	irgsp1_rep	three_prime_UTR	24312907	24313095	.	+	.	Parent=Os06t0610300-01
Chr06	irgsp1_rep	mRNA	24313523	24316697	.	+	.	ID=Os06t0610350-01;Name=Os06t0610350-01;Locus_id=Os06g0610350;RAP-DB Gene Symbol Synonym(s)=MOC1%2C moc1;RAP-DB Gene Name Synonym(s)=MONOCULM 1%2C monoculm1%2C Monoculm 1%2C Protein MONOCULM 1;Note=GRAS family nuclear protein%2C Control of tillering;Transcript_evidence=AY242058 (H89025%2C japonica);ORF_evidence=Q84MM9;GO=Biological Process: secondary shoot formation (GO:0010223),Cellular Component: nucleus (GO:0005634);InterPro=Scarecrow-like protein 18/MONOCULM 1 (IPR030017),Transcription factor GRAS (IPR005202);Manual Curation=December 15%2C 2009;Literature_PMID=12687001;TENOR=Os06t0610350-00
Chr06	irgsp1_rep	five_prime_UTR	24313523	24315056	.	+	.	Parent=Os06t0610350-01
Chr06	irgsp1_rep	CDS	24315057	24316382	.	+	0	Parent=Os06t0610350-01
Chr06	irgsp1_rep	three_prime_UTR	24316383	24316697	.	+	.	Parent=Os06t0610350-01
Chr06	irgsp1_rep	mRNA	24331142	24331627	.	+	.	ID=Os06t0610400-01;Name=Os06t0610400-01;Locus_id=Os06g0610400;Note=Conserved hypothetical protein.;Transcript_evidence=AK242048 (DDBJ%2C Best hit);ORF_evidence=NP_001174897.1 (RefSeq);NIAS_FLcDNA=J075121G13;TENOR=Os06t0610400-01;KEGG=Os06t0610400-01
Chr06	irgsp1_rep	five_prime_UTR	24331142	24331187	.	+	.	Parent=Os06t0610400-01
Chr06	irgsp1_rep	CDS	24331188	24331463	.	+	0	Parent=Os06t0610400-01
Chr06	irgsp1_rep	three_prime_UTR	24331464	24331627	.	+	.	Parent=Os06t0610400-01
Chr06	irgsp1_rep	mRNA	24332015	24336928	.	-	.	ID=Os06t0610500-01;Name=Os06t0610500-01;Locus_id=Os06g0610500;CGSNL Gene Symbol=MLO_;CGSNL Gene Name=POWDERY-MILDEW-RESISTANCE GENE O_;Oryzabase Gene Symbol Synonym(s)=OsMLO7%2C MLO7;Oryzabase Gene Name Synonym(s)=powdery-MiLdew-resistance gene O7%2C Mildew resistance Locus O-7;Note=Similar to Mlo family protein.;Transcript_evidence=AK109906 (DDBJ%2C Best hit);ORF_evidence=C0JA28 (UniProt);GO=Biological Process: cell death (GO:0008219),Cellular Component: integral to membrane (GO:0016021);InterPro=Mlo-related protein (IPR004326);NIAS_FLcDNA=002-149-G05;Oryzabase=9190;TENOR=Os06t0610500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	24336925	24336928	.	-	.	Parent=Os06t0610500-01
Chr06	irgsp1_rep	CDS	24336853	24336924	.	-	0	Parent=Os06t0610500-01
Chr06	irgsp1_rep	CDS	24336485	24336601	.	-	0	Parent=Os06t0610500-01
Chr06	irgsp1_rep	CDS	24336352	24336406	.	-	0	Parent=Os06t0610500-01
Chr06	irgsp1_rep	CDS	24335141	24335250	.	-	2	Parent=Os06t0610500-01
Chr06	irgsp1_rep	CDS	24334684	24334713	.	-	0	Parent=Os06t0610500-01
Chr06	irgsp1_rep	CDS	24334676	24334678	.	-	0	Parent=Os06t0610500-01
Chr06	irgsp1_rep	three_prime_UTR	24334639	24334675	.	-	.	Parent=Os06t0610500-01
Chr06	irgsp1_rep	three_prime_UTR	24333999	24334557	.	-	.	Parent=Os06t0610500-01
Chr06	irgsp1_rep	three_prime_UTR	24333571	24333789	.	-	.	Parent=Os06t0610500-01
Chr06	irgsp1_rep	three_prime_UTR	24333412	24333479	.	-	.	Parent=Os06t0610500-01
Chr06	irgsp1_rep	three_prime_UTR	24333180	24333240	.	-	.	Parent=Os06t0610500-01
Chr06	irgsp1_rep	three_prime_UTR	24332015	24332731	.	-	.	Parent=Os06t0610500-01
Chr06	irgsp1_rep	mRNA	24332650	24338625	.	+	.	ID=Os06t0610550-00;Name=Os06t0610550-00;Locus_id=Os06g0610550;Note=Hypothetical protein.;Transcript_evidence=tplb0043m06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0610550-00
Chr06	irgsp1_rep	five_prime_UTR	24332650	24332756	.	+	.	Parent=Os06t0610550-00
Chr06	irgsp1_rep	five_prime_UTR	24333372	24333481	.	+	.	Parent=Os06t0610550-00
Chr06	irgsp1_rep	five_prime_UTR	24333575	24333815	.	+	.	Parent=Os06t0610550-00
Chr06	irgsp1_rep	five_prime_UTR	24334325	24334391	.	+	.	Parent=Os06t0610550-00
Chr06	irgsp1_rep	five_prime_UTR	24334469	24334559	.	+	.	Parent=Os06t0610550-00
Chr06	irgsp1_rep	five_prime_UTR	24334643	24334713	.	+	.	Parent=Os06t0610550-00
Chr06	irgsp1_rep	five_prime_UTR	24335141	24335229	.	+	.	Parent=Os06t0610550-00
Chr06	irgsp1_rep	five_prime_UTR	24336392	24336619	.	+	.	Parent=Os06t0610550-00
Chr06	irgsp1_rep	five_prime_UTR	24336868	24337375	.	+	.	Parent=Os06t0610550-00
Chr06	irgsp1_rep	five_prime_UTR	24338334	24338400	.	+	.	Parent=Os06t0610550-00
Chr06	irgsp1_rep	CDS	24338401	24338625	.	+	0	Parent=Os06t0610550-00
Chr06	irgsp1_rep	mRNA	24343911	24344456	.	+	.	ID=Os06t0610600-01;Name=Os06t0610600-01;Locus_id=Os06g0610600;Note=Conserved hypothetical protein.;Transcript_evidence=AK063128 (DDBJ%2C Best hit);ORF_evidence=NP_001174291.1 (RefSeq);NIAS_FLcDNA=001-111-F04;Expression=AK063128;TENOR=Os06t0610600-01;KEGG=Os06t0610600-01
Chr06	irgsp1_rep	five_prime_UTR	24343911	24343986	.	+	.	Parent=Os06t0610600-01
Chr06	irgsp1_rep	CDS	24343987	24344268	.	+	0	Parent=Os06t0610600-01
Chr06	irgsp1_rep	three_prime_UTR	24344269	24344456	.	+	.	Parent=Os06t0610600-01
Chr06	irgsp1_rep	mRNA	24348670	24353951	.	+	.	ID=Os06t0610800-01;Name=Os06t0610800-01;Locus_id=Os06g0610800;Note=Peptidase A1 domain containing protein.;Transcript_evidence=AK066754 (DDBJ%2C Best hit);ORF_evidence=C0JA29 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J013074G14;Expression=AK066754;TENOR=Os06t0610800-01;KEGG=Os06t0610800-01
Chr06	irgsp1_rep	five_prime_UTR	24348670	24348741	.	+	.	Parent=Os06t0610800-01
Chr06	irgsp1_rep	CDS	24348742	24348982	.	+	0	Parent=Os06t0610800-01
Chr06	irgsp1_rep	CDS	24352469	24353787	.	+	2	Parent=Os06t0610800-01
Chr06	irgsp1_rep	three_prime_UTR	24353788	24353951	.	+	.	Parent=Os06t0610800-01
Chr06	irgsp1_rep	mRNA	24348670	24349292	.	+	.	ID=Os06t0610800-02;Name=Os06t0610800-02;Locus_id=Os06g0610800;Note=Similar to Aspartic proteinase nepenthesin-1.;Transcript_evidence=AK062719 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-106-D02;TENOR=Os06t0610800-02
Chr06	irgsp1_rep	five_prime_UTR	24348670	24348741	.	+	.	Parent=Os06t0610800-02
Chr06	irgsp1_rep	CDS	24348742	24349292	.	+	0	Parent=Os06t0610800-02
Chr06	irgsp1_rep	mRNA	24359242	24363675	.	+	.	ID=Os06t0611000-01;Name=Os06t0611000-01;Locus_id=Os06g0611000;Note=Similar to 65kD microtubule associated protein.;Transcript_evidence=AK067236 (DDBJ%2C Best hit);ORF_evidence=C0JA30 (UniProt);InterPro=Microtubule-associated protein%2C MAP65/ASE1-type (IPR007145);NIAS_FLcDNA=J013095H11;Expression=AK067236;TENOR=Os06t0611000-01;KEGG=Os06t0611000-01
Chr06	irgsp1_rep	five_prime_UTR	24359242	24359380	.	+	.	Parent=Os06t0611000-01
Chr06	irgsp1_rep	five_prime_UTR	24360473	24360486	.	+	.	Parent=Os06t0611000-01
Chr06	irgsp1_rep	CDS	24360487	24360558	.	+	0	Parent=Os06t0611000-01
Chr06	irgsp1_rep	CDS	24360728	24360931	.	+	0	Parent=Os06t0611000-01
Chr06	irgsp1_rep	CDS	24361040	24361297	.	+	0	Parent=Os06t0611000-01
Chr06	irgsp1_rep	CDS	24361654	24361869	.	+	0	Parent=Os06t0611000-01
Chr06	irgsp1_rep	CDS	24361976	24362131	.	+	0	Parent=Os06t0611000-01
Chr06	irgsp1_rep	CDS	24362208	24362519	.	+	0	Parent=Os06t0611000-01
Chr06	irgsp1_rep	CDS	24362609	24362696	.	+	0	Parent=Os06t0611000-01
Chr06	irgsp1_rep	CDS	24362876	24363024	.	+	2	Parent=Os06t0611000-01
Chr06	irgsp1_rep	CDS	24363117	24363407	.	+	0	Parent=Os06t0611000-01
Chr06	irgsp1_rep	three_prime_UTR	24363408	24363675	.	+	.	Parent=Os06t0611000-01
Chr06	irgsp1_rep	mRNA	24361177	24363582	.	+	.	ID=Os06t0611000-02;Name=Os06t0611000-02;Locus_id=Os06g0611000;Note=Similar to Microtubule-associated protein MAP65-1a.;Transcript_evidence=AK062173 (DDBJ%2C Best hit);ORF_evidence=C0JA30 (UniProt);InterPro=Microtubule-associated protein%2C MAP65/ASE1-type (IPR007145);NIAS_FLcDNA=001-046-C10;Expression=AK062173;TENOR=Os06t0611000-02;KEGG=Os06t0611000-02
Chr06	irgsp1_rep	five_prime_UTR	24361177	24361177	.	+	.	Parent=Os06t0611000-02
Chr06	irgsp1_rep	CDS	24361178	24361297	.	+	0	Parent=Os06t0611000-02
Chr06	irgsp1_rep	CDS	24361654	24361869	.	+	0	Parent=Os06t0611000-02
Chr06	irgsp1_rep	CDS	24361976	24362131	.	+	0	Parent=Os06t0611000-02
Chr06	irgsp1_rep	CDS	24362208	24362519	.	+	0	Parent=Os06t0611000-02
Chr06	irgsp1_rep	CDS	24362609	24362696	.	+	0	Parent=Os06t0611000-02
Chr06	irgsp1_rep	CDS	24362876	24363024	.	+	2	Parent=Os06t0611000-02
Chr06	irgsp1_rep	CDS	24363117	24363407	.	+	0	Parent=Os06t0611000-02
Chr06	irgsp1_rep	three_prime_UTR	24363408	24363582	.	+	.	Parent=Os06t0611000-02
Chr06	irgsp1_rep	mRNA	24360470	24363370	.	-	.	ID=Os06t0611050-00;Name=Os06t0611050-00;Locus_id=Os06g0611050;Note=Non-protein coding transcript.;Transcript_evidence=tplb0026b06 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os06t0611050-00
Chr06	irgsp1_rep	exon	24363120	24363370	.	-	.	Parent=Os06t0611050-00
Chr06	irgsp1_rep	exon	24362643	24363029	.	-	.	Parent=Os06t0611050-00
Chr06	irgsp1_rep	exon	24362190	24362561	.	-	.	Parent=Os06t0611050-00
Chr06	irgsp1_rep	exon	24361974	24362107	.	-	.	Parent=Os06t0611050-00
Chr06	irgsp1_rep	exon	24361025	24361867	.	-	.	Parent=Os06t0611050-00
Chr06	irgsp1_rep	exon	24360714	24360923	.	-	.	Parent=Os06t0611050-00
Chr06	irgsp1_rep	exon	24360470	24360543	.	-	.	Parent=Os06t0611050-00
Chr06	irgsp1_rep	mRNA	24364001	24364844	.	-	.	ID=Os06t0611100-01;Name=Os06t0611100-01;Locus_id=Os06g0611100;Note=Similar to IQ calmodulin-binding motif family protein.;Transcript_evidence=AK109238 (DDBJ%2C Best hit);ORF_evidence=C0JA14 (UniProt);NIAS_FLcDNA=002-156-F10;Expression=AK109238;TENOR=Os06t0611100-01;KEGG=Os06t0611100-01
Chr06	irgsp1_rep	five_prime_UTR	24364775	24364844	.	-	.	Parent=Os06t0611100-01
Chr06	irgsp1_rep	CDS	24364451	24364774	.	-	0	Parent=Os06t0611100-01
Chr06	irgsp1_rep	CDS	24364228	24364323	.	-	0	Parent=Os06t0611100-01
Chr06	irgsp1_rep	three_prime_UTR	24364001	24364227	.	-	.	Parent=Os06t0611100-01
Chr06	irgsp1_rep	mRNA	24365251	24366236	.	-	.	ID=Os06t0611150-00;Name=Os06t0611150-00;Locus_id=Os06g0611150;Note=Hypothetical conserved gene.;Transcript_evidence=EU973340 (DDBJ);ORF_evidence=A3BDH7 (UniProt);TENOR=Os06t0611150-00;KEGG=Os06t0611150-00
Chr06	irgsp1_rep	CDS	24366123	24366236	.	-	0	Parent=Os06t0611150-00
Chr06	irgsp1_rep	CDS	24365620	24365796	.	-	0	Parent=Os06t0611150-00
Chr06	irgsp1_rep	CDS	24365547	24365561	.	-	0	Parent=Os06t0611150-00
Chr06	irgsp1_rep	three_prime_UTR	24365251	24365546	.	-	.	Parent=Os06t0611150-00
Chr06	irgsp1_rep	mRNA	24370571	24372998	.	-	.	ID=Os06t0611200-00;Name=Os06t0611200-00;Locus_id=Os06g0611200;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK333348 (DDBJ);ORF_evidence=Q69XF8 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os06t0611200-00;KEGG=Os06t0611200-00
Chr06	irgsp1_rep	CDS	24371001	24372998	.	-	0	Parent=Os06t0611200-00
Chr06	irgsp1_rep	three_prime_UTR	24370969	24371000	.	-	.	Parent=Os06t0611200-00
Chr06	irgsp1_rep	three_prime_UTR	24370571	24370886	.	-	.	Parent=Os06t0611200-00
Chr06	irgsp1_rep	mRNA	24373215	24373855	.	-	.	ID=Os06t0611300-01;Name=Os06t0611300-01;Locus_id=Os06g0611300;Note=Conserved hypothetical protein.;Transcript_evidence=AK107800 (DDBJ%2C Best hit);ORF_evidence=C0JA33 (UniProt);NIAS_FLcDNA=002-133-E02;Expression=AK107800;TENOR=Os06t0611300-01;KEGG=Os06t0611300-01
Chr06	irgsp1_rep	five_prime_UTR	24373691	24373855	.	-	.	Parent=Os06t0611300-01
Chr06	irgsp1_rep	CDS	24373412	24373690	.	-	0	Parent=Os06t0611300-01
Chr06	irgsp1_rep	three_prime_UTR	24373215	24373411	.	-	.	Parent=Os06t0611300-01
Chr06	irgsp1_rep	mRNA	24379827	24382168	.	+	.	ID=Os06t0611400-01;Name=Os06t0611400-01;Locus_id=Os06g0611400;Oryzabase Gene Symbol Synonym(s)=OsPGL5%2C PGL5;Oryzabase Gene Name Synonym(s)=Polygalacturonases-Like 5%2C PG-like 5;Note=Pectin lyase fold/virulence factor domain containing protein.;Transcript_evidence=AK119501 (DDBJ%2C Best hit);ORF_evidence=C0JA55 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=001-134-E08;Oryzabase=22282;Expression=AK119501;TENOR=Os06t0611400-01;KEGG=Os06t0611400-01
Chr06	irgsp1_rep	five_prime_UTR	24379827	24379856	.	+	.	Parent=Os06t0611400-01
Chr06	irgsp1_rep	CDS	24379857	24380000	.	+	0	Parent=Os06t0611400-01
Chr06	irgsp1_rep	CDS	24380111	24380446	.	+	0	Parent=Os06t0611400-01
Chr06	irgsp1_rep	CDS	24380883	24381425	.	+	0	Parent=Os06t0611400-01
Chr06	irgsp1_rep	CDS	24381767	24382003	.	+	0	Parent=Os06t0611400-01
Chr06	irgsp1_rep	three_prime_UTR	24382004	24382168	.	+	.	Parent=Os06t0611400-01
Chr06	irgsp1_rep	mRNA	24384025	24386064	.	+	.	ID=Os06t0611500-01;Name=Os06t0611500-01;Locus_id=Os06g0611500;Oryzabase Gene Symbol Synonym(s)=OsPGL2%2C PGL2;Oryzabase Gene Name Synonym(s)=Polygalacturonases-Like 2%2C PG-like 2;Note=Similar to Polygalacturonase (Fragment).;Transcript_evidence=AK072708 (DDBJ%2C Best hit);ORF_evidence=C0JA56 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=J023142F24;Oryzabase=22279;Expression=AK072708;TENOR=Os06t0611500-01;KEGG=Os06t0611500-01
Chr06	irgsp1_rep	five_prime_UTR	24384025	24384073	.	+	.	Parent=Os06t0611500-01
Chr06	irgsp1_rep	CDS	24384074	24384604	.	+	0	Parent=Os06t0611500-01
Chr06	irgsp1_rep	CDS	24385143	24385889	.	+	0	Parent=Os06t0611500-01
Chr06	irgsp1_rep	three_prime_UTR	24385890	24386064	.	+	.	Parent=Os06t0611500-01
Chr06	irgsp1_rep	mRNA	24384206	24385835	.	-	.	ID=Os06t0611550-00;Name=Os06t0611550-00;Locus_id=Os06g0611550;Note=Hypothetical protein.;Transcript_evidence=tplb0028j17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0611550-00
Chr06	irgsp1_rep	five_prime_UTR	24385119	24385835	.	-	.	Parent=Os06t0611550-00
Chr06	irgsp1_rep	CDS	24385116	24385118	.	-	0	Parent=Os06t0611550-00
Chr06	irgsp1_rep	CDS	24384206	24384592	.	-	0	Parent=Os06t0611550-00
Chr06	irgsp1_rep	mRNA	24388239	24389073	.	+	.	ID=Os06t0611600-00;Name=Os06t0611600-00;Locus_id=Os06g0611600;Note=Similar to CDA1.;Transcript_evidence=EU965278 (DDBJ);ORF_evidence=A2WUD7 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: cytidine deaminase activity (GO:0004126),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: hydrolase activity (GO:0016787);InterPro=CMP/dCMP deaminase%2C zinc-binding (IPR002125),Cytidine/deoxycytidylate deaminase%2C zinc-binding domain (IPR013171),APOBEC/CMP deaminase%2C zinc-binding (IPR016192),Cytidine deaminase-like (IPR016193);TENOR=Os06t0611600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	24388239	24388871	.	+	0	Parent=Os06t0611600-00
Chr06	irgsp1_rep	three_prime_UTR	24388872	24389073	.	+	.	Parent=Os06t0611600-00
Chr06	irgsp1_rep	mRNA	24390137	24393848	.	-	.	ID=Os06t0611700-00;Name=Os06t0611700-00;Locus_id=Os06g0611700;Note=Similar to Nucleosome assembly protein 1-like protein 3.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5MGA9 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleus (GO:0005634);InterPro=Nucleosome assembly protein (NAP) (IPR002164);TENOR=Os06t0611700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	24393836	24393848	.	-	0	Parent=Os06t0611700-00
Chr06	irgsp1_rep	CDS	24393676	24393719	.	-	2	Parent=Os06t0611700-00
Chr06	irgsp1_rep	CDS	24393489	24393584	.	-	0	Parent=Os06t0611700-00
Chr06	irgsp1_rep	CDS	24391644	24391736	.	-	0	Parent=Os06t0611700-00
Chr06	irgsp1_rep	CDS	24390878	24391065	.	-	0	Parent=Os06t0611700-00
Chr06	irgsp1_rep	CDS	24390606	24390774	.	-	1	Parent=Os06t0611700-00
Chr06	irgsp1_rep	CDS	24390473	24390516	.	-	0	Parent=Os06t0611700-00
Chr06	irgsp1_rep	CDS	24390137	24390281	.	-	1	Parent=Os06t0611700-00
Chr06	irgsp1_rep	mRNA	24390159	24393586	.	+	.	ID=Os06t0611725-00;Name=Os06t0611725-00;Locus_id=Os06g0611725;Note=Non-protein coding transcript.;Transcript_evidence=BT085039 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0611725-00
Chr06	irgsp1_rep	exon	24390159	24390313	.	+	.	Parent=Os06t0611725-00
Chr06	irgsp1_rep	exon	24390584	24390723	.	+	.	Parent=Os06t0611725-00
Chr06	irgsp1_rep	exon	24390823	24391067	.	+	.	Parent=Os06t0611725-00
Chr06	irgsp1_rep	exon	24391482	24391752	.	+	.	Parent=Os06t0611725-00
Chr06	irgsp1_rep	exon	24393504	24393586	.	+	.	Parent=Os06t0611725-00
Chr06	irgsp1_rep	mRNA	24399546	24404035	.	-	.	ID=Os06t0611900-01;Name=Os06t0611900-01;Locus_id=Os06g0611900;CGSNL Gene Symbol=GDCP;CGSNL Gene Name=GLYCINE DECARBOXYLASE P;Oryzabase Gene Symbol Synonym(s)=OsGDCP;Oryzabase Gene Name Synonym(s)=Glycine decarboxylase P subunit%2C glycine decarboxylase P;Note=Similar to Glycine decarboxylase P subunit.;Transcript_evidence=AK111644 (DDBJ%2C Best hit);ORF_evidence=O22575 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: glycine dehydrogenase (decarboxylating) activity (GO:0004375),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424),Glycine cleavage system P-protein%2C N-terminal (IPR020580),Glycine cleavage system P protein (IPR020581);NIAS_FLcDNA=J013129F05;Oryzabase=22835;Expression=AK111644;TENOR=Os06t0611900-01;KEGG=Os06t0611900-01 (EC:1.4.4.2)
Chr06	irgsp1_rep	five_prime_UTR	24404034	24404035	.	-	.	Parent=Os06t0611900-01
Chr06	irgsp1_rep	CDS	24403990	24404033	.	-	0	Parent=Os06t0611900-01
Chr06	irgsp1_rep	CDS	24403705	24403900	.	-	1	Parent=Os06t0611900-01
Chr06	irgsp1_rep	CDS	24403497	24403622	.	-	0	Parent=Os06t0611900-01
Chr06	irgsp1_rep	CDS	24403228	24403413	.	-	0	Parent=Os06t0611900-01
Chr06	irgsp1_rep	CDS	24402437	24402550	.	-	0	Parent=Os06t0611900-01
Chr06	irgsp1_rep	CDS	24401838	24401990	.	-	0	Parent=Os06t0611900-01
Chr06	irgsp1_rep	CDS	24401018	24401206	.	-	0	Parent=Os06t0611900-01
Chr06	irgsp1_rep	CDS	24400852	24400929	.	-	0	Parent=Os06t0611900-01
Chr06	irgsp1_rep	CDS	24400644	24400769	.	-	0	Parent=Os06t0611900-01
Chr06	irgsp1_rep	CDS	24400457	24400555	.	-	0	Parent=Os06t0611900-01
Chr06	irgsp1_rep	CDS	24400060	24400177	.	-	0	Parent=Os06t0611900-01
Chr06	irgsp1_rep	CDS	24399856	24399950	.	-	2	Parent=Os06t0611900-01
Chr06	irgsp1_rep	three_prime_UTR	24399546	24399855	.	-	.	Parent=Os06t0611900-01
Chr06	irgsp1_rep	mRNA	24399629	24401097	.	-	.	ID=Os06t0611900-02;Name=Os06t0611900-02;Locus_id=Os06g0611900;CGSNL Gene Symbol=GDCP;CGSNL Gene Name=GLYCINE DECARBOXYLASE P;Oryzabase Gene Symbol Synonym(s)=OsGDCP;Oryzabase Gene Name Synonym(s)=Glycine decarboxylase P subunit%2C glycine decarboxylase P;Note=Similar to Victorin binding protein.;Transcript_evidence=AK111934 (DDBJ%2C Best hit);ORF_evidence=Q38766 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: glycine dehydrogenase (decarboxylating) activity (GO:0004375);InterPro=Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424),Glycine cleavage system P protein (IPR020581);NIAS_FLcDNA=001-019-E12;Oryzabase=22835;Expression=AK111934;TENOR=Os06t0611900-02;KEGG=Os06t0611900-02 (EC:1.4.4.2)
Chr06	irgsp1_rep	five_prime_UTR	24401096	24401097	.	-	.	Parent=Os06t0611900-02
Chr06	irgsp1_rep	CDS	24401018	24401095	.	-	0	Parent=Os06t0611900-02
Chr06	irgsp1_rep	CDS	24400852	24400929	.	-	0	Parent=Os06t0611900-02
Chr06	irgsp1_rep	CDS	24400644	24400769	.	-	0	Parent=Os06t0611900-02
Chr06	irgsp1_rep	CDS	24400457	24400555	.	-	0	Parent=Os06t0611900-02
Chr06	irgsp1_rep	CDS	24400060	24400177	.	-	0	Parent=Os06t0611900-02
Chr06	irgsp1_rep	CDS	24399856	24399950	.	-	2	Parent=Os06t0611900-02
Chr06	irgsp1_rep	three_prime_UTR	24399629	24399855	.	-	.	Parent=Os06t0611900-02
Chr06	irgsp1_rep	mRNA	24408763	24409733	.	-	.	ID=Os06t0612001-00;Name=Os06t0612001-00;Locus_id=Os06g0612001;Note=Conserved hypothetical protein.;Transcript_evidence=CT836291 (DDBJ%2C Best hit);ORF_evidence=Q5VNS7 (UniProt);TENOR=Os06t0612001-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	24409052	24409733	.	-	.	Parent=Os06t0612001-00
Chr06	irgsp1_rep	CDS	24408782	24409051	.	-	0	Parent=Os06t0612001-00
Chr06	irgsp1_rep	three_prime_UTR	24408763	24408781	.	-	.	Parent=Os06t0612001-00
Chr06	irgsp1_rep	mRNA	24425808	24426989	.	+	.	ID=Os06t0612200-01;Name=Os06t0612200-01;Locus_id=Os06g0612200;Oryzabase Gene Name Synonym(s)=RPA1 subunit of RNA polymerase I%2C RNA polymerase I  RPA1 subunit;Note=RNA polymerase Rpb1%2C domain 5 containing protein.;Transcript_evidence=AK059094 (DDBJ%2C Best hit);ORF_evidence=B8B4L0 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899);InterPro=RNA polymerase Rpb1%2C domain 5 (IPR007081);NIAS_FLcDNA=001-022-C03;Oryzabase=11570;Expression=AK059094;TENOR=Os06t0612200-01;KEGG=Os06t0612200-01 (EC:2.7.7.6)
Chr06	irgsp1_rep	five_prime_UTR	24425808	24425847	.	+	.	Parent=Os06t0612200-01
Chr06	irgsp1_rep	CDS	24425848	24425991	.	+	0	Parent=Os06t0612200-01
Chr06	irgsp1_rep	CDS	24426133	24426702	.	+	0	Parent=Os06t0612200-01
Chr06	irgsp1_rep	three_prime_UTR	24426703	24426989	.	+	.	Parent=Os06t0612200-01
Chr06	irgsp1_rep	mRNA	24453131	24456495	.	+	.	ID=Os06t0612300-01;Name=Os06t0612300-01;Locus_id=Os06g0612300;Note=Similar to T6J4.5 protein (WIP6 protein).;Transcript_evidence=AK071104 (DDBJ%2C Best hit);ORF_evidence=A6N8R9 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J023078D20;Expression=AK071104;TENOR=Os06t0612300-01;KEGG=Os06t0612300-01
Chr06	irgsp1_rep	five_prime_UTR	24453131	24453253	.	+	.	Parent=Os06t0612300-01
Chr06	irgsp1_rep	CDS	24453254	24454135	.	+	0	Parent=Os06t0612300-01
Chr06	irgsp1_rep	CDS	24455542	24455997	.	+	0	Parent=Os06t0612300-01
Chr06	irgsp1_rep	three_prime_UTR	24455998	24456495	.	+	.	Parent=Os06t0612300-01
Chr06	irgsp1_rep	mRNA	24482288	24482629	.	-	.	ID=Os06t0612550-00;Name=Os06t0612550-00;Locus_id=Os06g0612550;Note=Hypothetical protein.;Transcript_evidence=EU968718 (DDBJ);ORF_evidence=GeneMark;TENOR=Os06t0612550-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	24482628	24482629	.	-	.	Parent=Os06t0612550-00
Chr06	irgsp1_rep	CDS	24482322	24482627	.	-	0	Parent=Os06t0612550-00
Chr06	irgsp1_rep	three_prime_UTR	24482288	24482321	.	-	.	Parent=Os06t0612550-00
Chr06	irgsp1_rep	mRNA	24491993	24493907	.	+	.	ID=Os06t0612800-01;Name=Os06t0612800-01;Locus_id=Os06g0612800;CGSNL Gene Symbol=SAP8;CGSNL Gene Name=STRESS ASSOCIATED PROTEIN GENE 8;Oryzabase Gene Symbol Synonym(s)=Osi-SAP8%2C OsiSAP8%2C OsSAP8%2C OsSAP1%2C SAP1;Oryzabase Gene Name Synonym(s)=rice (indica) stress associated protein gene8%2C Zinc finger A20 and AN1 domain-containing stress-associated protein 8%2C O. sativa subspecies indica stress-associated protein 8%2C stress-associated protein 8;Note=Similar to PVPR3 protein.;Transcript_evidence=AK104175 (DDBJ%2C Best hit),AK060008 (DDBJ%2C Best hit),AK069720 (DDBJ%2C Best hit),AK104562 (DDBJ%2C Best hit),AK104605 (DDBJ%2C Best hit);ORF_evidence=A3BDI8 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C AN1-type (IPR000058),Zinc finger%2C A20-type (IPR002653);NIAS_FLcDNA=006-301-C11,006-302-C08,J023026K20,006-306-D03,006-309-A12;Oryzabase=14333;TENOR=Os06t0612800-01
Chr06	irgsp1_rep	five_prime_UTR	24491993	24492067	.	+	.	Parent=Os06t0612800-01
Chr06	irgsp1_rep	five_prime_UTR	24492244	24492305	.	+	.	Parent=Os06t0612800-01
Chr06	irgsp1_rep	five_prime_UTR	24493045	24493057	.	+	.	Parent=Os06t0612800-01
Chr06	irgsp1_rep	CDS	24493058	24493573	.	+	0	Parent=Os06t0612800-01
Chr06	irgsp1_rep	three_prime_UTR	24493574	24493907	.	+	.	Parent=Os06t0612800-01
Chr06	irgsp1_rep	mRNA	24493270	24493900	.	+	.	ID=Os06t0612800-02;Name=Os06t0612800-02;Locus_id=Os06g0612800;CGSNL Gene Symbol=SAP8;CGSNL Gene Name=STRESS ASSOCIATED PROTEIN GENE 8;Oryzabase Gene Symbol Synonym(s)=Osi-SAP8%2C OsiSAP8%2C OsSAP8%2C OsSAP1%2C SAP1;Oryzabase Gene Name Synonym(s)=rice (indica) stress associated protein gene8%2C Zinc finger A20 and AN1 domain-containing stress-associated protein 8%2C O. sativa subspecies indica stress-associated protein 8%2C stress-associated protein 8;Note=Similar to cDNA clone:006-301-C11%2C full insert sequence.;Transcript_evidence=AK062342 (DDBJ%2C Best hit);ORF_evidence=B7E4H0 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C AN1-type (IPR000058);NIAS_FLcDNA=001-101-F03;Oryzabase=14333;Expression=AK062342;TENOR=Os06t0612800-02;KEGG=Os06t0612800-02
Chr06	irgsp1_rep	five_prime_UTR	24493270	24493270	.	+	.	Parent=Os06t0612800-02
Chr06	irgsp1_rep	CDS	24493271	24493573	.	+	0	Parent=Os06t0612800-02
Chr06	irgsp1_rep	three_prime_UTR	24493574	24493900	.	+	.	Parent=Os06t0612800-02
Chr06	irgsp1_rep	mRNA	24494908	24500991	.	-	.	ID=Os06t0612900-00;Name=Os06t0612900-00;Locus_id=Os06g0612900;Note=Similar to predicted protein.;Transcript_evidence=CT837803 (DDBJ%2C Best hit);ORF_evidence=NP_001058067.2 (RefSeq);TENOR=Os06t0612900-00;KEGG=Os06t0612900-00
Chr06	irgsp1_rep	five_prime_UTR	24500954	24500991	.	-	.	Parent=Os06t0612900-00
Chr06	irgsp1_rep	CDS	24500935	24500953	.	-	0	Parent=Os06t0612900-00
Chr06	irgsp1_rep	CDS	24495231	24495406	.	-	2	Parent=Os06t0612900-00
Chr06	irgsp1_rep	three_prime_UTR	24494908	24495230	.	-	.	Parent=Os06t0612900-00
Chr06	irgsp1_rep	mRNA	24500344	24500885	.	+	.	ID=Os06t0612951-00;Name=Os06t0612951-00;Locus_id=Os06g0612951;Note=Hypothetical protein.;Transcript_evidence=AK360007 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0612951-00
Chr06	irgsp1_rep	CDS	24500344	24500885	.	+	0	Parent=Os06t0612951-00
Chr06	irgsp1_rep	mRNA	24502484	24504664	.	-	.	ID=Os06t0613000-01;Name=Os06t0613000-01;Locus_id=Os06g0613000;Note=Hypothetical conserved gene.;Transcript_evidence=AK243010 (DDBJ%2C Best hit);ORF_evidence=Q69WY2 (UniProt);InterPro=Protein of unknown function DUF1680 (IPR012878);NIAS_FLcDNA=J090097K03;TENOR=Os06t0613000-01;KEGG=Os06t0613000-01
Chr06	irgsp1_rep	five_prime_UTR	24504664	24504664	.	-	.	Parent=Os06t0613000-01
Chr06	irgsp1_rep	CDS	24504634	24504663	.	-	0	Parent=Os06t0613000-01
Chr06	irgsp1_rep	CDS	24504315	24504558	.	-	0	Parent=Os06t0613000-01
Chr06	irgsp1_rep	CDS	24504052	24504245	.	-	2	Parent=Os06t0613000-01
Chr06	irgsp1_rep	CDS	24503832	24503937	.	-	0	Parent=Os06t0613000-01
Chr06	irgsp1_rep	CDS	24503662	24503748	.	-	2	Parent=Os06t0613000-01
Chr06	irgsp1_rep	CDS	24502701	24503530	.	-	2	Parent=Os06t0613000-01
Chr06	irgsp1_rep	three_prime_UTR	24502484	24502700	.	-	.	Parent=Os06t0613000-01
Chr06	irgsp1_rep	mRNA	24502716	24503535	.	+	.	ID=Os06t0613101-00;Name=Os06t0613101-00;Locus_id=Os06g0613101;Note=Hypothetical protein.;Transcript_evidence=EU971186 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0613101-00
Chr06	irgsp1_rep	CDS	24502716	24503243	.	+	0	Parent=Os06t0613101-00
Chr06	irgsp1_rep	three_prime_UTR	24503244	24503429	.	+	.	Parent=Os06t0613101-00
Chr06	irgsp1_rep	three_prime_UTR	24503481	24503535	.	+	.	Parent=Os06t0613101-00
Chr06	irgsp1_rep	mRNA	24507007	24507508	.	+	.	ID=Os06t0613200-00;Name=Os06t0613200-00;Locus_id=Os06g0613200;Note=Hypothetical protein.;Transcript_evidence=AK360007 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0613200-00
Chr06	irgsp1_rep	five_prime_UTR	24507007	24507034	.	+	.	Parent=Os06t0613200-00
Chr06	irgsp1_rep	CDS	24507035	24507508	.	+	0	Parent=Os06t0613200-00
Chr06	irgsp1_rep	mRNA	24516542	24519256	.	+	.	ID=Os06t0613400-01;Name=Os06t0613400-01;Locus_id=Os06g0613400;RAP-DB Gene Symbol Synonym(s)=OsCOM1;RAP-DB Gene Name Synonym(s)=Completion of Meiosis 1%2C COM1/SAE2 homolog;CGSNL Gene Symbol=COM1;CGSNL Gene Name=COMPLETION OF MEIOSIS 1;Oryzabase Gene Symbol Synonym(s)=OsCOM1;Oryzabase Gene Name Synonym(s)=Completion of Meiosis 1%2C completion of meiotic recombination 1%2C COM1/SAE2 homolog;Note=COM1/SAE2 homolog%2C Homologous Chromosome synapsis and recombination in meiosis;Transcript_evidence=AK119314;ORF_evidence=B9FU48;GO=Biological Process: DNA damage checkpoint (GO:0000077),Biological Process: DNA repair (GO:0006281),Molecular Function: single-stranded DNA endodeoxyribonuclease activity (GO:0000014);InterPro=Com1/Ctip family (IPR013882);NIAS_FLcDNA=001-130-G11;Manual Curation=March 5%2C 2015;Literature_PMID=22507309;Oryzabase=10421;TENOR=Os06t0613400-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	24516542	24516765	.	+	.	Parent=Os06t0613400-01
Chr06	irgsp1_rep	five_prime_UTR	24516952	24516953	.	+	.	Parent=Os06t0613400-01
Chr06	irgsp1_rep	CDS	24516954	24517926	.	+	0	Parent=Os06t0613400-01
Chr06	irgsp1_rep	CDS	24518237	24518985	.	+	2	Parent=Os06t0613400-01
Chr06	irgsp1_rep	three_prime_UTR	24518986	24519256	.	+	.	Parent=Os06t0613400-01
Chr06	irgsp1_rep	mRNA	24522241	24527832	.	-	.	ID=Os06t0613500-01;Name=Os06t0613500-01;Locus_id=Os06g0613500;Oryzabase Gene Symbol Synonym(s)=OsbHLH095%2C bHLH095;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 095;Note=Similar to Transcription factor (Fragment).;Transcript_evidence=AK070970 (DDBJ%2C Best hit);ORF_evidence=D6MK51 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J023066J03;Oryzabase=15381;TENOR=Os06t0613500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	24527832	24527832	.	-	.	Parent=Os06t0613500-01
Chr06	irgsp1_rep	CDS	24527787	24527831	.	-	0	Parent=Os06t0613500-01
Chr06	irgsp1_rep	CDS	24527438	24527503	.	-	0	Parent=Os06t0613500-01
Chr06	irgsp1_rep	CDS	24525997	24526065	.	-	0	Parent=Os06t0613500-01
Chr06	irgsp1_rep	CDS	24525810	24525884	.	-	0	Parent=Os06t0613500-01
Chr06	irgsp1_rep	CDS	24524760	24524997	.	-	0	Parent=Os06t0613500-01
Chr06	irgsp1_rep	CDS	24522706	24522749	.	-	2	Parent=Os06t0613500-01
Chr06	irgsp1_rep	three_prime_UTR	24522241	24522705	.	-	.	Parent=Os06t0613500-01
Chr06	irgsp1_rep	mRNA	24531826	24533798	.	-	.	ID=Os06t0613600-01;Name=Os06t0613600-01;Locus_id=Os06g0613600;CGSNL Gene Symbol=CYP93F1;CGSNL Gene Name=P-450 93F1;Oryzabase Gene Symbol Synonym(s)=OsCYP93F1;Oryzabase Gene Name Synonym(s)=CytoChrome P450 93F1;Note=CytoChrome P450 family protein.;Transcript_evidence=AK287657 (DDBJ%2C Best hit);ORF_evidence=XP_002323294.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J065097L11;Oryzabase=20513;TENOR=Os06t0613600-01;KEGG=Os06t0613600-01
Chr06	irgsp1_rep	five_prime_UTR	24533736	24533798	.	-	.	Parent=Os06t0613600-01
Chr06	irgsp1_rep	CDS	24532800	24533735	.	-	0	Parent=Os06t0613600-01
Chr06	irgsp1_rep	CDS	24532074	24532724	.	-	0	Parent=Os06t0613600-01
Chr06	irgsp1_rep	three_prime_UTR	24531826	24532073	.	-	.	Parent=Os06t0613600-01
Chr06	irgsp1_rep	mRNA	24532117	24532732	.	+	.	ID=Os06t0613801-00;Name=Os06t0613801-00;Locus_id=Os06g0613801;Note=Hypothetical protein.;Transcript_evidence=EU942896 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0613801-00
Chr06	irgsp1_rep	five_prime_UTR	24532117	24532117	.	+	.	Parent=Os06t0613801-00
Chr06	irgsp1_rep	CDS	24532118	24532660	.	+	0	Parent=Os06t0613801-00
Chr06	irgsp1_rep	three_prime_UTR	24532661	24532732	.	+	.	Parent=Os06t0613801-00
Chr06	irgsp1_rep	mRNA	24555313	24557973	.	-	.	ID=Os06t0614000-01;Name=Os06t0614000-01;Locus_id=Os06g0614000;RAP-DB Gene Symbol Synonym(s)=OsFTIP1;RAP-DB Gene Name Synonym(s)=FT-INTERACTING PROTEIN1;Oryzabase Gene Symbol Synonym(s)=OsFTIP1%2C FTIP1;Oryzabase Gene Name Synonym(s)=FT-INTERACTING PROTEIN1%2C FT-INTERACTING PROTEIN 1;Note=A member of the family of multiple C2 domain and transmembrane region proteins (MCTPs)%2C Mediation of flowering time%2C Regulation of florigen transport;Transcript_evidence=Inferred from literature;ORF_evidence=A3BDJ6;InterPro=C2 domain (IPR000008),Phosphoribosyltransferase C-terminal (IPR013583);NIAS_FLcDNA=J033042F02 (truncated);Manual Curation=April 18%2C 2017;Literature_PMID=28254780;Oryzabase=21723;TENOR=Os06t0614000-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	24555499	24557973	.	-	0	Parent=Os06t0614000-01
Chr06	irgsp1_rep	three_prime_UTR	24555313	24555498	.	-	.	Parent=Os06t0614000-01
Chr06	irgsp1_rep	mRNA	24555498	24557830	.	+	.	ID=Os06t0614050-00;Name=Os06t0614050-00;Locus_id=Os06g0614050;Note=Hypothetical protein.;Transcript_evidence=tplb0048i05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0614050-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	24555498	24555498	.	+	.	Parent=Os06t0614050-00
Chr06	irgsp1_rep	CDS	24555499	24557830	.	+	0	Parent=Os06t0614050-00
Chr06	irgsp1_rep	mRNA	24561305	24568614	.	-	.	ID=Os06t0614100-01;Name=Os06t0614100-01;Locus_id=Os06g0614100;CGSNL Gene Symbol=BZIP49;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 49;Oryzabase Gene Symbol Synonym(s)=OsbZIP49;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 49;Note=bZIP transcription factor%2C bZIP-1 domain containing protein.;Transcript_evidence=AK119909 (DDBJ%2C Best hit);ORF_evidence=B8B4L8 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);NIAS_FLcDNA=002-183-A10;Oryzabase=10133;Expression=AK119909;TENOR=Os06t0614100-01;KEGG=Os06t0614100-01
Chr06	irgsp1_rep	five_prime_UTR	24568289	24568614	.	-	.	Parent=Os06t0614100-01
Chr06	irgsp1_rep	CDS	24568227	24568288	.	-	0	Parent=Os06t0614100-01
Chr06	irgsp1_rep	CDS	24567245	24567375	.	-	1	Parent=Os06t0614100-01
Chr06	irgsp1_rep	CDS	24566716	24566774	.	-	2	Parent=Os06t0614100-01
Chr06	irgsp1_rep	CDS	24566515	24566625	.	-	0	Parent=Os06t0614100-01
Chr06	irgsp1_rep	CDS	24566025	24566168	.	-	0	Parent=Os06t0614100-01
Chr06	irgsp1_rep	CDS	24565589	24565666	.	-	0	Parent=Os06t0614100-01
Chr06	irgsp1_rep	CDS	24565315	24565348	.	-	0	Parent=Os06t0614100-01
Chr06	irgsp1_rep	CDS	24564856	24565127	.	-	2	Parent=Os06t0614100-01
Chr06	irgsp1_rep	CDS	24562077	24562382	.	-	0	Parent=Os06t0614100-01
Chr06	irgsp1_rep	CDS	24561515	24561673	.	-	0	Parent=Os06t0614100-01
Chr06	irgsp1_rep	three_prime_UTR	24561305	24561514	.	-	.	Parent=Os06t0614100-01
Chr06	irgsp1_rep	mRNA	24574396	24582084	.	+	.	ID=Os06t0614300-01;Name=Os06t0614300-01;Locus_id=Os06g0614300;Note=C-CAP/cofactor C-like domain domain containing protein.;Transcript_evidence=AK070178 (DDBJ%2C Best hit);ORF_evidence=A2Q4U5 (UniProt);GO=Biological Process: cell morphogenesis (GO:0000902),Molecular Function: binding (GO:0005488);InterPro=CARP motif (IPR006599),Tubulin binding cofactor C (IPR012945),Cyclase-associated protein CAP/septum formation inhibitor MinC%2C C-terminal (IPR016098),C-CAP/cofactor C-like domain (IPR017901);NIAS_FLcDNA=J023046O09;Expression=AK070178;TENOR=Os06t0614300-01;KEGG=Os06t0614300-01
Chr06	irgsp1_rep	five_prime_UTR	24574396	24574429	.	+	.	Parent=Os06t0614300-01
Chr06	irgsp1_rep	CDS	24574430	24574936	.	+	0	Parent=Os06t0614300-01
Chr06	irgsp1_rep	CDS	24576229	24576369	.	+	0	Parent=Os06t0614300-01
Chr06	irgsp1_rep	CDS	24577287	24577691	.	+	0	Parent=Os06t0614300-01
Chr06	irgsp1_rep	CDS	24577867	24577971	.	+	0	Parent=Os06t0614300-01
Chr06	irgsp1_rep	CDS	24578287	24578427	.	+	0	Parent=Os06t0614300-01
Chr06	irgsp1_rep	CDS	24578982	24579185	.	+	0	Parent=Os06t0614300-01
Chr06	irgsp1_rep	CDS	24579858	24579944	.	+	0	Parent=Os06t0614300-01
Chr06	irgsp1_rep	CDS	24580341	24580452	.	+	0	Parent=Os06t0614300-01
Chr06	irgsp1_rep	CDS	24581624	24581667	.	+	2	Parent=Os06t0614300-01
Chr06	irgsp1_rep	three_prime_UTR	24581668	24582084	.	+	.	Parent=Os06t0614300-01
Chr06	irgsp1_rep	mRNA	24586215	24586799	.	+	.	ID=Os06t0614400-01;Name=Os06t0614400-01;Locus_id=Os06g0614400;Note=Conserved hypothetical protein.;Transcript_evidence=AK120383 (DDBJ%2C Best hit);ORF_evidence=Q5Z7S3 (UniProt);NIAS_FLcDNA=J013073E06;TENOR=Os06t0614400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	24586215	24586575	.	+	.	Parent=Os06t0614400-01
Chr06	irgsp1_rep	CDS	24586576	24586731	.	+	0	Parent=Os06t0614400-01
Chr06	irgsp1_rep	three_prime_UTR	24586732	24586799	.	+	.	Parent=Os06t0614400-01
Chr06	irgsp1_rep	mRNA	24590387	24591328	.	+	.	ID=Os06t0614550-01;Name=Os06t0614550-01;Locus_id=Os06g0614550;Note=Conserved hypothetical protein.;Transcript_evidence=AK242709 (DDBJ%2C Best hit);ORF_evidence=B9F599 (UniProt);NIAS_FLcDNA=J090041B11;TENOR=Os06t0614550-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	24590387	24590817	.	+	.	Parent=Os06t0614550-01
Chr06	irgsp1_rep	CDS	24590818	24590859	.	+	0	Parent=Os06t0614550-01
Chr06	irgsp1_rep	CDS	24590950	24591186	.	+	0	Parent=Os06t0614550-01
Chr06	irgsp1_rep	three_prime_UTR	24591187	24591328	.	+	.	Parent=Os06t0614550-01
Chr06	irgsp1_rep	mRNA	24680314	24681229	.	-	.	ID=Os06t0616400-01;Name=Os06t0616400-01;Locus_id=Os06g0616400;Note=Chaperonin Cpn60%2C conserved site domain containing protein.;Transcript_evidence=AK072464 (DDBJ%2C Best hit);ORF_evidence=Q6YTM1 (UniProt);NIAS_FLcDNA=J023120F04;Expression=AK072464;TENOR=Os06t0616400-01;KEGG=Os06t0616400-01
Chr06	irgsp1_rep	five_prime_UTR	24681117	24681229	.	-	.	Parent=Os06t0616400-01
Chr06	irgsp1_rep	CDS	24680478	24681116	.	-	0	Parent=Os06t0616400-01
Chr06	irgsp1_rep	three_prime_UTR	24680314	24680477	.	-	.	Parent=Os06t0616400-01
Chr06	irgsp1_rep	mRNA	24706807	24707541	.	+	.	ID=Os06t0616900-01;Name=Os06t0616900-01;Locus_id=Os06g0616900;Note=Hypothetical protein.;Transcript_evidence=AK107912 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-134-G07;Expression=AK107912;TENOR=Os06t0616900-01;KEGG=Os06t0616900-01
Chr06	irgsp1_rep	five_prime_UTR	24706807	24706919	.	+	.	Parent=Os06t0616900-01
Chr06	irgsp1_rep	CDS	24706920	24707333	.	+	0	Parent=Os06t0616900-01
Chr06	irgsp1_rep	three_prime_UTR	24707334	24707541	.	+	.	Parent=Os06t0616900-01
Chr06	irgsp1_rep	mRNA	24789476	24793565	.	-	.	ID=Os06t0617800-01;Name=Os06t0617800-01;Locus_id=Os06g0617800;Note=Ribose-phosphate pyrophosphokinase 2 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 2). Splice isoform 1.;Transcript_evidence=AK066802 (DDBJ%2C Best hit);ORF_evidence=A3BDK5 (UniProt);GO=Biological Process: nucleoside metabolic process (GO:0009116),Biological Process: ribonucleoside monophosphate biosynthetic process (GO:0009156),Biological Process: nucleotide biosynthetic process (GO:0009165),Biological Process: cellular biosynthetic process (GO:0044249),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: ribose phosphate diphosphokinase activity (GO:0004749);InterPro=Phosphoribosyltransferase (IPR000836),Phosphoribosyl pyrophosphate synthetase%2C conserved site (IPR000842),Ribose-phosphate diphosphokinase (IPR005946);NIAS_FLcDNA=J013075O08;Expression=AK066802;TENOR=Os06t0617800-01;KEGG=Os06t0617800-01 (EC:2.7.6.1)
Chr06	irgsp1_rep	five_prime_UTR	24793051	24793565	.	-	.	Parent=Os06t0617800-01
Chr06	irgsp1_rep	CDS	24792958	24793050	.	-	0	Parent=Os06t0617800-01
Chr06	irgsp1_rep	CDS	24792658	24792873	.	-	0	Parent=Os06t0617800-01
Chr06	irgsp1_rep	CDS	24792119	24792367	.	-	0	Parent=Os06t0617800-01
Chr06	irgsp1_rep	CDS	24791383	24791526	.	-	0	Parent=Os06t0617800-01
Chr06	irgsp1_rep	CDS	24791095	24791259	.	-	0	Parent=Os06t0617800-01
Chr06	irgsp1_rep	CDS	24790750	24790819	.	-	0	Parent=Os06t0617800-01
Chr06	irgsp1_rep	CDS	24790431	24790657	.	-	2	Parent=Os06t0617800-01
Chr06	irgsp1_rep	three_prime_UTR	24789476	24790430	.	-	.	Parent=Os06t0617800-01
Chr06	irgsp1_rep	mRNA	24789501	24793211	.	-	.	ID=Os06t0617800-02;Name=Os06t0617800-02;Locus_id=Os06g0617800;Note=Ribose-phosphate pyrophosphokinase 2 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 2). Splice isoform 1.;Transcript_evidence=AK067505 (DDBJ%2C Best hit);ORF_evidence=A3BDK5 (UniProt);GO=Biological Process: nucleoside metabolic process (GO:0009116),Biological Process: ribonucleoside monophosphate biosynthetic process (GO:0009156),Biological Process: nucleotide biosynthetic process (GO:0009165),Biological Process: cellular biosynthetic process (GO:0044249),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: ribose phosphate diphosphokinase activity (GO:0004749);InterPro=Phosphoribosyltransferase (IPR000836),Phosphoribosyl pyrophosphate synthetase%2C conserved site (IPR000842),Ribose-phosphate diphosphokinase (IPR005946);NIAS_FLcDNA=J013109E14;Expression=AK067505;TENOR=Os06t0617800-02;KEGG=Os06t0617800-02 (EC:2.7.6.1)
Chr06	irgsp1_rep	five_prime_UTR	24793051	24793211	.	-	.	Parent=Os06t0617800-02
Chr06	irgsp1_rep	CDS	24792958	24793050	.	-	0	Parent=Os06t0617800-02
Chr06	irgsp1_rep	CDS	24792658	24792873	.	-	0	Parent=Os06t0617800-02
Chr06	irgsp1_rep	CDS	24792119	24792367	.	-	0	Parent=Os06t0617800-02
Chr06	irgsp1_rep	CDS	24791383	24791526	.	-	0	Parent=Os06t0617800-02
Chr06	irgsp1_rep	CDS	24791095	24791259	.	-	0	Parent=Os06t0617800-02
Chr06	irgsp1_rep	CDS	24790750	24790819	.	-	0	Parent=Os06t0617800-02
Chr06	irgsp1_rep	CDS	24790431	24790657	.	-	2	Parent=Os06t0617800-02
Chr06	irgsp1_rep	three_prime_UTR	24789731	24790430	.	-	.	Parent=Os06t0617800-02
Chr06	irgsp1_rep	three_prime_UTR	24789501	24789638	.	-	.	Parent=Os06t0617800-02
Chr06	irgsp1_rep	mRNA	24789542	24793211	.	-	.	ID=Os06t0617800-03;Name=Os06t0617800-03;Locus_id=Os06g0617800;Note=Ribose-phosphate pyrophosphokinase 2 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 2). Splice isoform 1.;Transcript_evidence=AK065878 (DDBJ%2C Best hit);ORF_evidence=A3BDK5 (UniProt);GO=Biological Process: nucleoside metabolic process (GO:0009116),Biological Process: ribonucleoside monophosphate biosynthetic process (GO:0009156),Biological Process: nucleotide biosynthetic process (GO:0009165),Biological Process: cellular biosynthetic process (GO:0044249),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: ribose phosphate diphosphokinase activity (GO:0004749);InterPro=Phosphoribosyltransferase (IPR000836),Phosphoribosyl pyrophosphate synthetase%2C conserved site (IPR000842),Ribose-phosphate diphosphokinase (IPR005946);NIAS_FLcDNA=J013047O13;Expression=AK065878;TENOR=Os06t0617800-03;KEGG=Os06t0617800-03 (EC:2.7.6.1)
Chr06	irgsp1_rep	five_prime_UTR	24793051	24793211	.	-	.	Parent=Os06t0617800-03
Chr06	irgsp1_rep	CDS	24792958	24793050	.	-	0	Parent=Os06t0617800-03
Chr06	irgsp1_rep	CDS	24792658	24792873	.	-	0	Parent=Os06t0617800-03
Chr06	irgsp1_rep	CDS	24792119	24792367	.	-	0	Parent=Os06t0617800-03
Chr06	irgsp1_rep	CDS	24791383	24791526	.	-	0	Parent=Os06t0617800-03
Chr06	irgsp1_rep	CDS	24791095	24791259	.	-	0	Parent=Os06t0617800-03
Chr06	irgsp1_rep	CDS	24790750	24790819	.	-	0	Parent=Os06t0617800-03
Chr06	irgsp1_rep	CDS	24790431	24790657	.	-	2	Parent=Os06t0617800-03
Chr06	irgsp1_rep	three_prime_UTR	24789542	24790430	.	-	.	Parent=Os06t0617800-03
Chr06	irgsp1_rep	mRNA	24789590	24792332	.	-	.	ID=Os06t0617800-04;Name=Os06t0617800-04;Locus_id=Os06g0617800;Note=Similar to Ribose-phosphate pyrophosphokinase.;Transcript_evidence=AK068485 (DDBJ%2C Best hit);ORF_evidence=A2YF17 (UniProt);GO=Biological Process: nucleoside metabolic process (GO:0009116),Biological Process: ribonucleoside monophosphate biosynthetic process (GO:0009156),Biological Process: nucleotide biosynthetic process (GO:0009165),Biological Process: cellular biosynthetic process (GO:0044249),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: ribose phosphate diphosphokinase activity (GO:0004749);InterPro=Phosphoribosyltransferase (IPR000836),Phosphoribosyl pyrophosphate synthetase%2C conserved site (IPR000842),Ribose-phosphate diphosphokinase (IPR005946);NIAS_FLcDNA=J013151A20;Expression=AK068485;TENOR=Os06t0617800-04;KEGG=Os06t0617800-04 (EC:2.7.6.1)
Chr06	irgsp1_rep	five_prime_UTR	24792332	24792332	.	-	.	Parent=Os06t0617800-04
Chr06	irgsp1_rep	CDS	24792119	24792331	.	-	0	Parent=Os06t0617800-04
Chr06	irgsp1_rep	CDS	24791383	24791526	.	-	0	Parent=Os06t0617800-04
Chr06	irgsp1_rep	CDS	24791095	24791259	.	-	0	Parent=Os06t0617800-04
Chr06	irgsp1_rep	CDS	24790750	24790819	.	-	0	Parent=Os06t0617800-04
Chr06	irgsp1_rep	CDS	24790576	24790657	.	-	2	Parent=Os06t0617800-04
Chr06	irgsp1_rep	CDS	24789840	24790020	.	-	1	Parent=Os06t0617800-04
Chr06	irgsp1_rep	three_prime_UTR	24789590	24789839	.	-	.	Parent=Os06t0617800-04
Chr06	irgsp1_rep	mRNA	24789504	24792306	.	-	.	ID=Os06t0617800-05;Name=Os06t0617800-05;Locus_id=Os06g0617800;Note=Similar to Ribose-phosphate pyrophosphokinase.;Transcript_evidence=AK067686 (DDBJ%2C Best hit);ORF_evidence=A3BDK5 (UniProt);GO=Biological Process: nucleoside metabolic process (GO:0009116),Biological Process: ribonucleoside monophosphate biosynthetic process (GO:0009156),Biological Process: nucleotide biosynthetic process (GO:0009165),Biological Process: cellular biosynthetic process (GO:0044249),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: ribose phosphate diphosphokinase activity (GO:0004749);InterPro=Phosphoribosyltransferase (IPR000836),Phosphoribosyl pyrophosphate synthetase%2C conserved site (IPR000842),Ribose-phosphate diphosphokinase (IPR005946);NIAS_FLcDNA=J013119H01;Expression=AK067686;TENOR=Os06t0617800-05;KEGG=Os06t0617800-05 (EC:2.7.6.1)
Chr06	irgsp1_rep	five_prime_UTR	24792305	24792306	.	-	.	Parent=Os06t0617800-05
Chr06	irgsp1_rep	CDS	24792119	24792304	.	-	0	Parent=Os06t0617800-05
Chr06	irgsp1_rep	CDS	24791383	24791526	.	-	0	Parent=Os06t0617800-05
Chr06	irgsp1_rep	CDS	24791095	24791259	.	-	0	Parent=Os06t0617800-05
Chr06	irgsp1_rep	CDS	24790750	24790819	.	-	0	Parent=Os06t0617800-05
Chr06	irgsp1_rep	CDS	24790431	24790657	.	-	2	Parent=Os06t0617800-05
Chr06	irgsp1_rep	three_prime_UTR	24789504	24790430	.	-	.	Parent=Os06t0617800-05
Chr06	irgsp1_rep	mRNA	24805546	24808589	.	+	.	ID=Os06t0618000-01;Name=Os06t0618000-01;Locus_id=Os06g0618000;Note=Nse4 domain containing protein.;Transcript_evidence=AK110866 (DDBJ%2C Best hit);ORF_evidence=B8B4M1 (UniProt);InterPro=Nse4 (IPR014854);NIAS_FLcDNA=002-172-E01;Expression=AK110866;TENOR=Os06t0618000-01;KEGG=Os06t0618000-01
Chr06	irgsp1_rep	five_prime_UTR	24805546	24805633	.	+	.	Parent=Os06t0618000-01
Chr06	irgsp1_rep	CDS	24805634	24805772	.	+	0	Parent=Os06t0618000-01
Chr06	irgsp1_rep	CDS	24805939	24806019	.	+	2	Parent=Os06t0618000-01
Chr06	irgsp1_rep	CDS	24806374	24806614	.	+	2	Parent=Os06t0618000-01
Chr06	irgsp1_rep	CDS	24806730	24806823	.	+	1	Parent=Os06t0618000-01
Chr06	irgsp1_rep	CDS	24807165	24807381	.	+	0	Parent=Os06t0618000-01
Chr06	irgsp1_rep	CDS	24807470	24807561	.	+	2	Parent=Os06t0618000-01
Chr06	irgsp1_rep	CDS	24807955	24808290	.	+	0	Parent=Os06t0618000-01
Chr06	irgsp1_rep	three_prime_UTR	24808291	24808589	.	+	.	Parent=Os06t0618000-01
Chr06	irgsp1_rep	mRNA	24805630	24808211	.	-	.	ID=Os06t0618050-00;Name=Os06t0618050-00;Locus_id=Os06g0618050;Note=Hypothetical protein.;Transcript_evidence=tplb0041g04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0618050-00
Chr06	irgsp1_rep	five_prime_UTR	24807915	24808211	.	-	.	Parent=Os06t0618050-00
Chr06	irgsp1_rep	five_prime_UTR	24807465	24807591	.	-	.	Parent=Os06t0618050-00
Chr06	irgsp1_rep	five_prime_UTR	24807221	24807374	.	-	.	Parent=Os06t0618050-00
Chr06	irgsp1_rep	CDS	24807178	24807220	.	-	0	Parent=Os06t0618050-00
Chr06	irgsp1_rep	CDS	24806732	24806834	.	-	2	Parent=Os06t0618050-00
Chr06	irgsp1_rep	CDS	24806457	24806616	.	-	1	Parent=Os06t0618050-00
Chr06	irgsp1_rep	three_prime_UTR	24806368	24806456	.	-	.	Parent=Os06t0618050-00
Chr06	irgsp1_rep	three_prime_UTR	24805938	24806012	.	-	.	Parent=Os06t0618050-00
Chr06	irgsp1_rep	three_prime_UTR	24805630	24805771	.	-	.	Parent=Os06t0618050-00
Chr06	irgsp1_rep	mRNA	24808827	24811960	.	-	.	ID=Os06t0618100-01;Name=Os06t0618100-01;Locus_id=Os06g0618100;CGSNL Gene Symbol=C3H44;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44;Oryzabase Gene Symbol Synonym(s)=OsC3H44;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 44;Note=K Homology%2C type 1%2C subgroup domain containing protein.;Transcript_evidence=AK103787 (DDBJ%2C Best hit);ORF_evidence=B6TVM8 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571),K Homology (IPR004087),K Homology%2C type 1 (IPR004088),K Homology%2C type 1%2C subgroup (IPR018111);NIAS_FLcDNA=J033145I17;Oryzabase=8610;Expression=AK103787;TENOR=Os06t0618100-01;KEGG=Os06t0618100-01
Chr06	irgsp1_rep	five_prime_UTR	24809918	24811960	.	-	.	Parent=Os06t0618100-01
Chr06	irgsp1_rep	CDS	24809138	24809917	.	-	0	Parent=Os06t0618100-01
Chr06	irgsp1_rep	three_prime_UTR	24808827	24809137	.	-	.	Parent=Os06t0618100-01
Chr06	irgsp1_rep	mRNA	24814384	24817639	.	-	.	ID=Os06t0618150-00;Name=Os06t0618150-00;Locus_id=Os06g0618150;Note=Similar to Protein N-terminal asparagine amidohydrolase.;Transcript_evidence=AK363364 (DDBJ);ORF_evidence=B6TDI4 (UniProt);TENOR=Os06t0618150-00;KEGG=Os06t0618150-00
Chr06	irgsp1_rep	CDS	24817304	24817639	.	-	0	Parent=Os06t0618150-00
Chr06	irgsp1_rep	CDS	24816331	24816395	.	-	0	Parent=Os06t0618150-00
Chr06	irgsp1_rep	CDS	24816106	24816199	.	-	1	Parent=Os06t0618150-00
Chr06	irgsp1_rep	CDS	24815981	24816019	.	-	0	Parent=Os06t0618150-00
Chr06	irgsp1_rep	CDS	24815698	24815883	.	-	0	Parent=Os06t0618150-00
Chr06	irgsp1_rep	CDS	24815220	24815398	.	-	0	Parent=Os06t0618150-00
Chr06	irgsp1_rep	CDS	24814603	24814722	.	-	1	Parent=Os06t0618150-00
Chr06	irgsp1_rep	CDS	24814384	24814507	.	-	1	Parent=Os06t0618150-00
Chr06	irgsp1_rep	mRNA	24820012	24829958	.	+	.	ID=Os06t0618300-01;Name=Os06t0618300-01;Locus_id=Os06g0618300;Note=Conserved hypothetical protein.;Transcript_evidence=AK067443 (DDBJ%2C Best hit);ORF_evidence=A2YF24 (UniProt);NIAS_FLcDNA=J013102L13;TENOR=Os06t0618300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	24820012	24823224	.	+	.	Parent=Os06t0618300-01
Chr06	irgsp1_rep	CDS	24823225	24823335	.	+	0	Parent=Os06t0618300-01
Chr06	irgsp1_rep	CDS	24823444	24823584	.	+	0	Parent=Os06t0618300-01
Chr06	irgsp1_rep	three_prime_UTR	24823585	24823595	.	+	.	Parent=Os06t0618300-01
Chr06	irgsp1_rep	three_prime_UTR	24829816	24829958	.	+	.	Parent=Os06t0618300-01
Chr06	irgsp1_rep	mRNA	24833887	24839894	.	+	.	ID=Os06t0618600-01;Name=Os06t0618600-01;Locus_id=Os06g0618600;Note=Rgp1 domain containing protein.;Transcript_evidence=AK060212 (DDBJ%2C Best hit);ORF_evidence=Q9LPN0 (UniProt);InterPro=Reduced growth phenotype protein 1 (IPR014848);NIAS_FLcDNA=001-002-B09;Expression=AK060212;TENOR=Os06t0618600-01;KEGG=Os06t0618600-01
Chr06	irgsp1_rep	five_prime_UTR	24833887	24833888	.	+	.	Parent=Os06t0618600-01
Chr06	irgsp1_rep	CDS	24833889	24833948	.	+	0	Parent=Os06t0618600-01
Chr06	irgsp1_rep	CDS	24834951	24835014	.	+	0	Parent=Os06t0618600-01
Chr06	irgsp1_rep	CDS	24835219	24835286	.	+	2	Parent=Os06t0618600-01
Chr06	irgsp1_rep	CDS	24835640	24835886	.	+	0	Parent=Os06t0618600-01
Chr06	irgsp1_rep	CDS	24836284	24836427	.	+	2	Parent=Os06t0618600-01
Chr06	irgsp1_rep	CDS	24836557	24836663	.	+	2	Parent=Os06t0618600-01
Chr06	irgsp1_rep	CDS	24836748	24836801	.	+	0	Parent=Os06t0618600-01
Chr06	irgsp1_rep	CDS	24836873	24836956	.	+	0	Parent=Os06t0618600-01
Chr06	irgsp1_rep	CDS	24838100	24838263	.	+	0	Parent=Os06t0618600-01
Chr06	irgsp1_rep	CDS	24838655	24838799	.	+	1	Parent=Os06t0618600-01
Chr06	irgsp1_rep	three_prime_UTR	24838800	24838801	.	+	.	Parent=Os06t0618600-01
Chr06	irgsp1_rep	three_prime_UTR	24839452	24839894	.	+	.	Parent=Os06t0618600-01
Chr06	irgsp1_rep	mRNA	24837427	24839039	.	-	.	ID=Os06t0618650-01;Name=Os06t0618650-01;Locus_id=Os06g0618650;Note=Non-protein coding transcript.;Transcript_evidence=AK242695 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090036H03;TENOR=Os06t0618650-01
Chr06	irgsp1_rep	exon	24837427	24839039	.	-	.	Parent=Os06t0618650-01
Chr06	irgsp1_rep	mRNA	24843829	24844743	.	-	.	ID=Os06t0618700-01;Name=Os06t0618700-01;Locus_id=Os06g0618700;Oryzabase Gene Symbol Synonym(s)=OsVQ24;Oryzabase Gene Name Synonym(s)=VQ motif-containing protein 24;Note=VQ domain containing protein.;Transcript_evidence=AK107075 (DDBJ%2C Best hit);ORF_evidence=B9FU61 (UniProt);InterPro=VQ (IPR008889);NIAS_FLcDNA=002-121-F03;Oryzabase=13640;Expression=AK107075;TENOR=Os06t0618700-01;KEGG=Os06t0618700-01
Chr06	irgsp1_rep	five_prime_UTR	24844576	24844743	.	-	.	Parent=Os06t0618700-01
Chr06	irgsp1_rep	CDS	24844009	24844575	.	-	0	Parent=Os06t0618700-01
Chr06	irgsp1_rep	three_prime_UTR	24843829	24844008	.	-	.	Parent=Os06t0618700-01
Chr06	irgsp1_rep	mRNA	24866897	24871171	.	+	.	ID=Os06t0619000-01;Name=Os06t0619000-01;Locus_id=Os06g0619000;Note=NB-ARC domain containing protein.;Transcript_evidence=AK065719 (DDBJ%2C Best hit);ORF_evidence=B9FU63 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013038C18;Expression=AK065719;TENOR=Os06t0619000-01;KEGG=Os06t0619000-01
Chr06	irgsp1_rep	five_prime_UTR	24866897	24866965	.	+	.	Parent=Os06t0619000-01
Chr06	irgsp1_rep	CDS	24866966	24870433	.	+	0	Parent=Os06t0619000-01
Chr06	irgsp1_rep	CDS	24870762	24870809	.	+	0	Parent=Os06t0619000-01
Chr06	irgsp1_rep	three_prime_UTR	24870810	24870892	.	+	.	Parent=Os06t0619000-01
Chr06	irgsp1_rep	three_prime_UTR	24870977	24871171	.	+	.	Parent=Os06t0619000-01
Chr06	irgsp1_rep	mRNA	24873640	24876024	.	-	.	ID=Os06t0619066-00;Name=Os06t0619066-00;Locus_id=Os06g0619066;Note=Hypothetical protein.;Transcript_evidence=AK364020 (DDBJ);ORF_evidence=GeneMark;TENOR=Os06t0619066-00
Chr06	irgsp1_rep	five_prime_UTR	24875512	24876024	.	-	.	Parent=Os06t0619066-00
Chr06	irgsp1_rep	CDS	24875270	24875511	.	-	0	Parent=Os06t0619066-00
Chr06	irgsp1_rep	CDS	24874355	24874498	.	-	1	Parent=Os06t0619066-00
Chr06	irgsp1_rep	CDS	24873658	24873796	.	-	1	Parent=Os06t0619066-00
Chr06	irgsp1_rep	three_prime_UTR	24873640	24873657	.	-	.	Parent=Os06t0619066-00
Chr06	irgsp1_rep	mRNA	24877039	24879309	.	+	.	ID=Os06t0619132-00;Name=Os06t0619132-00;Locus_id=Os06g0619132;Note=Hypothetical protein.;Transcript_evidence=tplb0045g10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0619132-00
Chr06	irgsp1_rep	five_prime_UTR	24877039	24877941	.	+	.	Parent=Os06t0619132-00
Chr06	irgsp1_rep	CDS	24877942	24878376	.	+	0	Parent=Os06t0619132-00
Chr06	irgsp1_rep	three_prime_UTR	24878377	24879309	.	+	.	Parent=Os06t0619132-00
Chr06	irgsp1_rep	mRNA	24888616	24891111	.	+	.	ID=Os06t0619600-00;Name=Os06t0619600-00;Locus_id=Os06g0619600;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q69XP2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),S-receptor-like serine/threonine-protein kinase (IPR024171);TENOR=Os06t0619600-00;KEGG=Os06t0619600-00
Chr06	irgsp1_rep	CDS	24888616	24891111	.	+	0	Parent=Os06t0619600-00
Chr06	irgsp1_rep	mRNA	24888642	24891016	.	-	.	ID=Os06t0619650-00;Name=Os06t0619650-00;Locus_id=Os06g0619650;Note=Hypothetical protein.;Transcript_evidence=tplb0045g10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0619650-00
Chr06	irgsp1_rep	five_prime_UTR	24889270	24891016	.	-	.	Parent=Os06t0619650-00
Chr06	irgsp1_rep	CDS	24888642	24889269	.	-	0	Parent=Os06t0619650-00
Chr06	irgsp1_rep	mRNA	24901989	24902673	.	+	.	ID=Os06t0620000-01;Name=Os06t0620000-01;Locus_id=Os06g0620000;Note=Conserved hypothetical protein.;Transcript_evidence=AK111088 (DDBJ%2C Best hit);ORF_evidence=Q8H7M9 (UniProt);NIAS_FLcDNA=002-175-F11;Expression=AK111088;TENOR=Os06t0620000-01;KEGG=Os06t0620000-01
Chr06	irgsp1_rep	five_prime_UTR	24901989	24902265	.	+	.	Parent=Os06t0620000-01
Chr06	irgsp1_rep	CDS	24902266	24902508	.	+	0	Parent=Os06t0620000-01
Chr06	irgsp1_rep	three_prime_UTR	24902509	24902673	.	+	.	Parent=Os06t0620000-01
Chr06	irgsp1_rep	mRNA	24907230	24909987	.	-	.	ID=Os06t0620200-01;Name=Os06t0620200-01;Locus_id=Os06g0620200;Oryzabase Gene Symbol Synonym(s)=OsLecRK paralog;Oryzabase Gene Name Synonym(s)=Lectin Receptor Kinase paralog;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK241445 (DDBJ%2C Best hit);ORF_evidence=Q69XN5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J065162L11;Oryzabase=19691;TENOR=Os06t0620200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	24907432	24909987	.	-	0	Parent=Os06t0620200-01
Chr06	irgsp1_rep	three_prime_UTR	24907230	24907431	.	-	.	Parent=Os06t0620200-01
Chr06	irgsp1_rep	mRNA	24916372	24916777	.	-	.	ID=Os06t0620550-00;Name=Os06t0620550-00;Locus_id=Os06g0620550;Note=Hypothetical protein.;Transcript_evidence=EU951739 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0620550-00
Chr06	irgsp1_rep	five_prime_UTR	24916776	24916777	.	-	.	Parent=Os06t0620550-00
Chr06	irgsp1_rep	CDS	24916372	24916775	.	-	0	Parent=Os06t0620550-00
Chr06	irgsp1_rep	mRNA	24917274	24920283	.	-	.	ID=Os06t0620600-01;Name=Os06t0620600-01;Locus_id=Os06g0620600;Note=Hrf1 family protein.;Transcript_evidence=AK059836 (DDBJ%2C Best hit),AK071563 (DDBJ%2C Best hit);ORF_evidence=B6T3P3 (UniProt);InterPro=Hrf1 (IPR005578);NIAS_FLcDNA=006-206-C05,J023104M14;Expression=AK059836;TENOR=Os06t0620600-01;KEGG=Os06t0620600-01
Chr06	irgsp1_rep	five_prime_UTR	24920191	24920283	.	-	.	Parent=Os06t0620600-01
Chr06	irgsp1_rep	five_prime_UTR	24918950	24918954	.	-	.	Parent=Os06t0620600-01
Chr06	irgsp1_rep	CDS	24918779	24918949	.	-	0	Parent=Os06t0620600-01
Chr06	irgsp1_rep	CDS	24918553	24918651	.	-	0	Parent=Os06t0620600-01
Chr06	irgsp1_rep	CDS	24918318	24918469	.	-	0	Parent=Os06t0620600-01
Chr06	irgsp1_rep	CDS	24917601	24917982	.	-	1	Parent=Os06t0620600-01
Chr06	irgsp1_rep	three_prime_UTR	24917274	24917600	.	-	.	Parent=Os06t0620600-01
Chr06	irgsp1_rep	mRNA	24920808	24921218	.	+	.	ID=Os06t0620700-00;Name=Os06t0620700-00;Locus_id=Os06g0620700;Note=Conserved hypothetical protein.;Transcript_evidence=FP092809 (DDBJ);ORF_evidence=Q69XW9 (UniProt);TENOR=Os06t0620700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	24920808	24920863	.	+	.	Parent=Os06t0620700-00
Chr06	irgsp1_rep	CDS	24920864	24921142	.	+	0	Parent=Os06t0620700-00
Chr06	irgsp1_rep	three_prime_UTR	24921143	24921218	.	+	.	Parent=Os06t0620700-00
Chr06	irgsp1_rep	mRNA	24928485	24929145	.	-	.	ID=Os06t0621100-00;Name=Os06t0621100-00;Locus_id=Os06g0621100;Note=Hypothetical conserved gene.;Transcript_evidence=FJ901216 (DDBJ);ORF_evidence=C4P7S4 (UniProt);GO=Biological Process: signal transduction (GO:0007165);InterPro=NAF domain (IPR004041),NAF/FISL domain (IPR018451);TENOR=Os06t0621100-00;KEGG=Os06t0621100-00
Chr06	irgsp1_rep	five_prime_UTR	24928986	24929145	.	-	.	Parent=Os06t0621100-00
Chr06	irgsp1_rep	CDS	24928485	24928985	.	-	0	Parent=Os06t0621100-00
Chr06	irgsp1_rep	mRNA	24939164	24945222	.	-	.	ID=Os06t0621500-01;Name=Os06t0621500-01;Locus_id=Os06g0621500;Note=Conserved hypothetical protein.;Transcript_evidence=AK120647 (DDBJ%2C Best hit);ORF_evidence=B9FIH0 (UniProt);NIAS_FLcDNA=J013155H07;TENOR=Os06t0621500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	24945154	24945222	.	-	.	Parent=Os06t0621500-01
Chr06	irgsp1_rep	five_prime_UTR	24940948	24944437	.	-	.	Parent=Os06t0621500-01
Chr06	irgsp1_rep	five_prime_UTR	24939944	24940850	.	-	.	Parent=Os06t0621500-01
Chr06	irgsp1_rep	CDS	24939886	24939943	.	-	0	Parent=Os06t0621500-01
Chr06	irgsp1_rep	CDS	24939243	24939445	.	-	2	Parent=Os06t0621500-01
Chr06	irgsp1_rep	three_prime_UTR	24939164	24939242	.	-	.	Parent=Os06t0621500-01
Chr06	irgsp1_rep	mRNA	24950026	24950129	.	-	.	ID=Os06t0621550-00;Name=Os06t0621550-00;Locus_id=Os06g0621550;Note=Non-protein coding transcript.;Transcript_evidence=DQ120792 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0621550-00
Chr06	irgsp1_rep	exon	24950026	24950129	.	-	.	Parent=Os06t0621550-00
Chr06	irgsp1_rep	mRNA	24954264	24959578	.	-	.	ID=Os06t0621600-01;Name=Os06t0621600-01;Locus_id=Os06g0621600;Note=Hypothetical protein.;Transcript_evidence=AK102049 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J033082A18;TENOR=Os06t0621600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	24959433	24959578	.	-	.	Parent=Os06t0621600-01
Chr06	irgsp1_rep	five_prime_UTR	24956622	24958521	.	-	.	Parent=Os06t0621600-01
Chr06	irgsp1_rep	CDS	24956307	24956621	.	-	0	Parent=Os06t0621600-01
Chr06	irgsp1_rep	three_prime_UTR	24954881	24956306	.	-	.	Parent=Os06t0621600-01
Chr06	irgsp1_rep	three_prime_UTR	24954264	24954775	.	-	.	Parent=Os06t0621600-01
Chr06	irgsp1_rep	mRNA	24974772	24978046	.	-	.	ID=Os06t0621800-01;Name=Os06t0621800-01;Locus_id=Os06g0621800;Note=Conserved hypothetical protein.;Transcript_evidence=AK100375 (DDBJ%2C Best hit);ORF_evidence=Q69XW6 (UniProt);NIAS_FLcDNA=J023084L14;Expression=AK100375;TENOR=Os06t0621800-01;KEGG=Os06t0621800-01
Chr06	irgsp1_rep	five_prime_UTR	24977709	24978046	.	-	.	Parent=Os06t0621800-01
Chr06	irgsp1_rep	five_prime_UTR	24976639	24977426	.	-	.	Parent=Os06t0621800-01
Chr06	irgsp1_rep	five_prime_UTR	24976282	24976374	.	-	.	Parent=Os06t0621800-01
Chr06	irgsp1_rep	CDS	24976033	24976281	.	-	0	Parent=Os06t0621800-01
Chr06	irgsp1_rep	three_prime_UTR	24974772	24976032	.	-	.	Parent=Os06t0621800-01
Chr06	irgsp1_rep	mRNA	24982296	24986652	.	+	.	ID=Os06t0621900-01;Name=Os06t0621900-01;Locus_id=Os06g0621900;CGSNL Gene Symbol=EXPA16;CGSNL Gene Name=ALPHA-EXPANSIN 16;Oryzabase Gene Symbol Synonym(s)=OsEXPA16%2C OsEXP16%2C osaEXPa1.27;Oryzabase Gene Name Synonym(s)=Rice expansin-16%2C Expansin-A16%2C Alpha-expansin-16;Note=Similar to Alpha-expansin OsEXPA16 (Fragment).;Transcript_evidence=AK101940 (DDBJ%2C Best hit);ORF_evidence=Q69XV9 (UniProt);GO=Biological Process: plant-type cell wall organization (GO:0009664),Cellular Component: extracellular region (GO:0005576);InterPro=Expansin (IPR002963),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);NIAS_FLcDNA=J033074I02;Oryzabase=9379;Expression=AK101940;TENOR=Os06t0621900-01;KEGG=Os06t0621900-01
Chr06	irgsp1_rep	five_prime_UTR	24982296	24982474	.	+	.	Parent=Os06t0621900-01
Chr06	irgsp1_rep	CDS	24982475	24982625	.	+	0	Parent=Os06t0621900-01
Chr06	irgsp1_rep	CDS	24983865	24984186	.	+	2	Parent=Os06t0621900-01
Chr06	irgsp1_rep	CDS	24986151	24986460	.	+	1	Parent=Os06t0621900-01
Chr06	irgsp1_rep	three_prime_UTR	24986461	24986652	.	+	.	Parent=Os06t0621900-01
Chr06	irgsp1_rep	mRNA	24983916	24986451	.	-	.	ID=Os06t0621950-00;Name=Os06t0621950-00;Locus_id=Os06g0621950;Note=Hypothetical protein.;Transcript_evidence=BT016845 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0621950-00
Chr06	irgsp1_rep	CDS	24986164	24986451	.	-	0	Parent=Os06t0621950-00
Chr06	irgsp1_rep	CDS	24983916	24984199	.	-	0	Parent=Os06t0621950-00
Chr06	irgsp1_rep	mRNA	24986845	24997890	.	-	.	ID=Os06t0622000-01;Name=Os06t0622000-01;Locus_id=Os06g0622000;CGSNL Gene Symbol=CWZF6;CGSNL Gene Name=CW-DOMAIN CONTAINING ZINC FINGER PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsCW-ZF6%2C CW-ZF6;Oryzabase Gene Name Synonym(s)=cysteine-tryptophan-domain containing zinc finger protein on Chromosome 6%2C CW-domain containing zinc finger protein 6%2C CW-domain containing protein 6;Note=Zinc finger%2C CW-type domain containing protein.;Transcript_evidence=AK070840 (DDBJ%2C Best hit);ORF_evidence=B9FPZ1 (UniProt);GO=Molecular Function: ATP binding (GO:0005524),Molecular Function: zinc ion binding (GO:0008270);InterPro=ATPase-like%2C ATP-binding domain (IPR003594),Zinc finger%2C CW-type (IPR011124);NIAS_FLcDNA=J023072C10;Oryzabase=21910;Expression=AK070840;TENOR=Os06t0622000-01;KEGG=Os06t0622000-01
Chr06	irgsp1_rep	five_prime_UTR	24997697	24997890	.	-	.	Parent=Os06t0622000-01
Chr06	irgsp1_rep	five_prime_UTR	24996015	24996031	.	-	.	Parent=Os06t0622000-01
Chr06	irgsp1_rep	CDS	24995966	24996014	.	-	0	Parent=Os06t0622000-01
Chr06	irgsp1_rep	CDS	24995438	24995519	.	-	2	Parent=Os06t0622000-01
Chr06	irgsp1_rep	CDS	24994705	24994855	.	-	1	Parent=Os06t0622000-01
Chr06	irgsp1_rep	CDS	24994096	24994243	.	-	0	Parent=Os06t0622000-01
Chr06	irgsp1_rep	CDS	24993351	24993696	.	-	2	Parent=Os06t0622000-01
Chr06	irgsp1_rep	CDS	24992622	24992805	.	-	1	Parent=Os06t0622000-01
Chr06	irgsp1_rep	CDS	24991593	24991694	.	-	0	Parent=Os06t0622000-01
Chr06	irgsp1_rep	CDS	24991157	24991492	.	-	0	Parent=Os06t0622000-01
Chr06	irgsp1_rep	CDS	24990406	24990489	.	-	0	Parent=Os06t0622000-01
Chr06	irgsp1_rep	CDS	24990169	24990327	.	-	0	Parent=Os06t0622000-01
Chr06	irgsp1_rep	CDS	24989568	24989651	.	-	0	Parent=Os06t0622000-01
Chr06	irgsp1_rep	CDS	24989331	24989468	.	-	0	Parent=Os06t0622000-01
Chr06	irgsp1_rep	CDS	24988379	24988491	.	-	0	Parent=Os06t0622000-01
Chr06	irgsp1_rep	CDS	24987858	24988065	.	-	1	Parent=Os06t0622000-01
Chr06	irgsp1_rep	CDS	24987682	24987775	.	-	0	Parent=Os06t0622000-01
Chr06	irgsp1_rep	CDS	24987501	24987601	.	-	2	Parent=Os06t0622000-01
Chr06	irgsp1_rep	three_prime_UTR	24987484	24987500	.	-	.	Parent=Os06t0622000-01
Chr06	irgsp1_rep	three_prime_UTR	24986845	24987321	.	-	.	Parent=Os06t0622000-01
Chr06	irgsp1_rep	mRNA	25013593	25019770	.	+	.	ID=Os06t0622300-01;Name=Os06t0622300-01;Locus_id=Os06g0622300;RAP-DB Gene Symbol Synonym(s)=OsARID3%2C ARID3;RAP-DB Gene Name Synonym(s)=AT-rich Interaction Domain-containing protein 3;Oryzabase Gene Symbol Synonym(s)=OsARID3%2C ARID3%2C SIP5;Oryzabase Gene Name Synonym(s)=AT-rich Interaction Domain-containing protein 3%2C SKIP interacting protein 5%2C SKIPa-interacting protein 5%2C SKIPa-interacting protein 5;Note=AT-rich interaction domain-containing protein%2C Shoot apical meristem (SAM) development;Transcript_evidence=AK073058,AK099075;ORF_evidence=Q69XV5;GO=Molecular Function: DNA binding (GO:0003677);InterPro=ARID DNA-binding domain (IPR001606),HSP20-like chaperone (IPR008978),Alpha crystallin/Hsp20 domain (IPR002068);NIAS_FLcDNA=J033020C22, J013170P10;Manual Curation=August 31%2C 2015;Literature_PMID=26121094;Oryzabase=19993;Expression=AK073058;TENOR=Os06t0622300-01;KEGG=Os06t0622300-01
Chr06	irgsp1_rep	five_prime_UTR	25013593	25014038	.	+	.	Parent=Os06t0622300-01
Chr06	irgsp1_rep	five_prime_UTR	25014194	25014203	.	+	.	Parent=Os06t0622300-01
Chr06	irgsp1_rep	CDS	25014204	25014799	.	+	0	Parent=Os06t0622300-01
Chr06	irgsp1_rep	CDS	25014892	25014931	.	+	1	Parent=Os06t0622300-01
Chr06	irgsp1_rep	CDS	25016086	25016138	.	+	0	Parent=Os06t0622300-01
Chr06	irgsp1_rep	CDS	25016267	25016312	.	+	1	Parent=Os06t0622300-01
Chr06	irgsp1_rep	CDS	25016874	25016966	.	+	0	Parent=Os06t0622300-01
Chr06	irgsp1_rep	CDS	25017388	25017507	.	+	0	Parent=Os06t0622300-01
Chr06	irgsp1_rep	CDS	25017583	25017634	.	+	0	Parent=Os06t0622300-01
Chr06	irgsp1_rep	CDS	25017703	25017775	.	+	2	Parent=Os06t0622300-01
Chr06	irgsp1_rep	CDS	25018002	25018068	.	+	1	Parent=Os06t0622300-01
Chr06	irgsp1_rep	CDS	25018322	25018372	.	+	0	Parent=Os06t0622300-01
Chr06	irgsp1_rep	CDS	25018678	25018770	.	+	0	Parent=Os06t0622300-01
Chr06	irgsp1_rep	CDS	25018859	25018960	.	+	0	Parent=Os06t0622300-01
Chr06	irgsp1_rep	three_prime_UTR	25018961	25018993	.	+	.	Parent=Os06t0622300-01
Chr06	irgsp1_rep	three_prime_UTR	25019361	25019770	.	+	.	Parent=Os06t0622300-01
Chr06	irgsp1_rep	mRNA	25013594	25019710	.	+	.	ID=Os06t0622300-02;Name=Os06t0622300-02;Locus_id=Os06g0622300;Oryzabase Gene Symbol Synonym(s)=OsARID3%2C ARID3%2C SIP5;Oryzabase Gene Name Synonym(s)=AT-rich Interaction Domain-containing protein 3%2C SKIP interacting protein 5%2C SKIPa-interacting protein 5%2C SKIPa-interacting protein 5;Note=Hypothetical conserved gene.;Transcript_evidence=AK101550 (DDBJ%2C Best hit);ORF_evidence=B8B4P3 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: DNA binding (GO:0003677);InterPro=ARID/BRIGHT DNA-binding domain (IPR001606);NIAS_FLcDNA=J033048O14;Oryzabase=19993;Expression=AK101550;TENOR=Os06t0622300-02;KEGG=Os06t0622300-02
Chr06	irgsp1_rep	five_prime_UTR	25013594	25014038	.	+	.	Parent=Os06t0622300-02
Chr06	irgsp1_rep	five_prime_UTR	25014194	25014203	.	+	.	Parent=Os06t0622300-02
Chr06	irgsp1_rep	CDS	25014204	25014799	.	+	0	Parent=Os06t0622300-02
Chr06	irgsp1_rep	CDS	25014892	25014931	.	+	1	Parent=Os06t0622300-02
Chr06	irgsp1_rep	CDS	25016045	25016089	.	+	0	Parent=Os06t0622300-02
Chr06	irgsp1_rep	three_prime_UTR	25016090	25016138	.	+	.	Parent=Os06t0622300-02
Chr06	irgsp1_rep	three_prime_UTR	25016267	25016312	.	+	.	Parent=Os06t0622300-02
Chr06	irgsp1_rep	three_prime_UTR	25016874	25016966	.	+	.	Parent=Os06t0622300-02
Chr06	irgsp1_rep	three_prime_UTR	25017388	25017507	.	+	.	Parent=Os06t0622300-02
Chr06	irgsp1_rep	three_prime_UTR	25017583	25017634	.	+	.	Parent=Os06t0622300-02
Chr06	irgsp1_rep	three_prime_UTR	25017703	25017775	.	+	.	Parent=Os06t0622300-02
Chr06	irgsp1_rep	three_prime_UTR	25018002	25018068	.	+	.	Parent=Os06t0622300-02
Chr06	irgsp1_rep	three_prime_UTR	25018322	25018372	.	+	.	Parent=Os06t0622300-02
Chr06	irgsp1_rep	three_prime_UTR	25018678	25018770	.	+	.	Parent=Os06t0622300-02
Chr06	irgsp1_rep	three_prime_UTR	25018859	25018993	.	+	.	Parent=Os06t0622300-02
Chr06	irgsp1_rep	three_prime_UTR	25019361	25019710	.	+	.	Parent=Os06t0622300-02
Chr06	irgsp1_rep	mRNA	25014587	25019288	.	+	.	ID=Os06t0622300-03;Name=Os06t0622300-03;Locus_id=Os06g0622300;Oryzabase Gene Symbol Synonym(s)=OsARID3%2C ARID3%2C SIP5;Oryzabase Gene Name Synonym(s)=AT-rich Interaction Domain-containing protein 3%2C SKIP interacting protein 5%2C SKIPa-interacting protein 5%2C SKIPa-interacting protein 5;Note=Similar to DNA-binding protein.;Transcript_evidence=AK064549 (DDBJ%2C Best hit);ORF_evidence=NP_001147977.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: DNA binding (GO:0003677);InterPro=ARID/BRIGHT DNA-binding domain (IPR001606),Heat shock protein Hsp20 (IPR002068),HSP20-like chaperone (IPR008978);NIAS_FLcDNA=002-112-B09;Oryzabase=19993;Expression=AK064549;TENOR=Os06t0622300-03;KEGG=Os06t0622300-03
Chr06	irgsp1_rep	five_prime_UTR	25014587	25014587	.	+	.	Parent=Os06t0622300-03
Chr06	irgsp1_rep	CDS	25014588	25014799	.	+	0	Parent=Os06t0622300-03
Chr06	irgsp1_rep	CDS	25014892	25014931	.	+	1	Parent=Os06t0622300-03
Chr06	irgsp1_rep	CDS	25016086	25016138	.	+	0	Parent=Os06t0622300-03
Chr06	irgsp1_rep	CDS	25016267	25016312	.	+	1	Parent=Os06t0622300-03
Chr06	irgsp1_rep	CDS	25016874	25016966	.	+	0	Parent=Os06t0622300-03
Chr06	irgsp1_rep	CDS	25017388	25017507	.	+	0	Parent=Os06t0622300-03
Chr06	irgsp1_rep	CDS	25017583	25017634	.	+	0	Parent=Os06t0622300-03
Chr06	irgsp1_rep	CDS	25017703	25017775	.	+	2	Parent=Os06t0622300-03
Chr06	irgsp1_rep	CDS	25018002	25018068	.	+	1	Parent=Os06t0622300-03
Chr06	irgsp1_rep	CDS	25018322	25018372	.	+	0	Parent=Os06t0622300-03
Chr06	irgsp1_rep	CDS	25018678	25018770	.	+	0	Parent=Os06t0622300-03
Chr06	irgsp1_rep	CDS	25018859	25018960	.	+	0	Parent=Os06t0622300-03
Chr06	irgsp1_rep	three_prime_UTR	25018961	25019288	.	+	.	Parent=Os06t0622300-03
Chr06	irgsp1_rep	mRNA	25014892	25019776	.	+	.	ID=Os06t0622300-04;Name=Os06t0622300-04;Locus_id=Os06g0622300;Oryzabase Gene Symbol Synonym(s)=OsARID3%2C ARID3%2C SIP5;Oryzabase Gene Name Synonym(s)=AT-rich Interaction Domain-containing protein 3%2C SKIP interacting protein 5%2C SKIPa-interacting protein 5%2C SKIPa-interacting protein 5;Note=Similar to DNA-binding protein.;Transcript_evidence=AK071559 (DDBJ%2C Best hit);ORF_evidence=NP_001147977.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: DNA binding (GO:0003677);InterPro=ARID/BRIGHT DNA-binding domain (IPR001606),Heat shock protein Hsp20 (IPR002068),HSP20-like chaperone (IPR008978);NIAS_FLcDNA=J023099P16;Oryzabase=19993;Expression=AK071559;TENOR=Os06t0622300-04;KEGG=Os06t0622300-04
Chr06	irgsp1_rep	five_prime_UTR	25014892	25014892	.	+	.	Parent=Os06t0622300-04
Chr06	irgsp1_rep	CDS	25014893	25014931	.	+	0	Parent=Os06t0622300-04
Chr06	irgsp1_rep	CDS	25016086	25016138	.	+	0	Parent=Os06t0622300-04
Chr06	irgsp1_rep	CDS	25016267	25016312	.	+	1	Parent=Os06t0622300-04
Chr06	irgsp1_rep	CDS	25016874	25016966	.	+	0	Parent=Os06t0622300-04
Chr06	irgsp1_rep	CDS	25017388	25017507	.	+	0	Parent=Os06t0622300-04
Chr06	irgsp1_rep	CDS	25017583	25017634	.	+	0	Parent=Os06t0622300-04
Chr06	irgsp1_rep	CDS	25017703	25017775	.	+	2	Parent=Os06t0622300-04
Chr06	irgsp1_rep	CDS	25018002	25018068	.	+	1	Parent=Os06t0622300-04
Chr06	irgsp1_rep	CDS	25018322	25018372	.	+	0	Parent=Os06t0622300-04
Chr06	irgsp1_rep	CDS	25018678	25018770	.	+	0	Parent=Os06t0622300-04
Chr06	irgsp1_rep	CDS	25018859	25018960	.	+	0	Parent=Os06t0622300-04
Chr06	irgsp1_rep	three_prime_UTR	25018961	25018993	.	+	.	Parent=Os06t0622300-04
Chr06	irgsp1_rep	three_prime_UTR	25019361	25019776	.	+	.	Parent=Os06t0622300-04
Chr06	irgsp1_rep	mRNA	25020914	25021178	.	-	.	ID=Os06t0622400-00;Name=Os06t0622400-00;Locus_id=Os06g0622400;Note=Hypothetical protein.;Transcript_evidence=EU944117 (DDBJ);ORF_evidence=GeneMark;TENOR=Os06t0622400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	25020914	25021178	.	-	0	Parent=Os06t0622400-00
Chr06	irgsp1_rep	mRNA	25025002	25028105	.	-	.	ID=Os06t0622500-00;Name=Os06t0622500-00;Locus_id=Os06g0622500;Oryzabase Gene Symbol Synonym(s)=APC3%2C OsAPC3;Oryzabase Gene Name Synonym(s)=ANAPHASE PROMOTING COMPLEX 3;Note=Similar to predicted protein.;Transcript_evidence=BT064845 (DDBJ);ORF_evidence=NP_849994.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide TPR-1 (IPR001440),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);Oryzabase=21053;TENOR=Os06t0622500-00;KEGG=Os06t0622500-00
Chr06	irgsp1_rep	CDS	25027917	25028105	.	-	0	Parent=Os06t0622500-00
Chr06	irgsp1_rep	CDS	25027773	25027838	.	-	0	Parent=Os06t0622500-00
Chr06	irgsp1_rep	CDS	25026872	25026991	.	-	0	Parent=Os06t0622500-00
Chr06	irgsp1_rep	CDS	25026708	25026784	.	-	0	Parent=Os06t0622500-00
Chr06	irgsp1_rep	CDS	25026309	25026428	.	-	1	Parent=Os06t0622500-00
Chr06	irgsp1_rep	CDS	25025970	25026189	.	-	1	Parent=Os06t0622500-00
Chr06	irgsp1_rep	CDS	25025336	25025617	.	-	0	Parent=Os06t0622500-00
Chr06	irgsp1_rep	CDS	25025002	25025070	.	-	0	Parent=Os06t0622500-00
Chr06	irgsp1_rep	mRNA	25038113	25039008	.	-	.	ID=Os06t0622550-01;Name=Os06t0622550-01;Locus_id=Os06g0622550;Note=Conserved hypothetical protein.;Transcript_evidence=AK288608 (DDBJ%2C Best hit);ORF_evidence=Q53K76 (UniProt);NIAS_FLcDNA=J090053F14;TENOR=Os06t0622550-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	25038950	25039008	.	-	.	Parent=Os06t0622550-01
Chr06	irgsp1_rep	CDS	25038698	25038949	.	-	0	Parent=Os06t0622550-01
Chr06	irgsp1_rep	three_prime_UTR	25038113	25038697	.	-	.	Parent=Os06t0622550-01
Chr06	irgsp1_rep	mRNA	25041945	25043935	.	+	.	ID=Os06t0622700-01;Name=Os06t0622700-01;Locus_id=Os06g0622700;RAP-DB Gene Symbol Synonym(s)=BZIP50%2C OsbZIP60%2C bZIP50%2C OsbZIP50%2C OsbZIP74%2C OsbZIP50-S;RAP-DB Gene Name Synonym(s)=b-ZIP TRANSCRIPTION FACTOR 50%2C b-ZIP transcription factor 60%2C b-ZIP transcription factor 50%2C b-ZIP transcription factor 74;CGSNL Gene Symbol=BZIP50;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 50;Oryzabase Gene Symbol Synonym(s)=OsbZIP60%2C bZIP50%2C OsbZIP50%2C OsbZIP74%2C bZIP74%2C OsbZIP50-S;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 60%2C b-ZIP transcription factor 50%2C b-ZIP transcription factor 74;Note=bZIP transcription factor%2C Endoplasmic reticulum stress response;Transcript_evidence=AK107021;ORF_evidence=Q69XV0;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Basic-leucine zipper domain (IPR004827);NIAS_FLcDNA=002-121-A01;Manual Curation=March 13%2C 2015;Literature_PMID=22050533,22199238;Oryzabase=9263;Expression=AK107021;TENOR=Os06t0622700-01;KEGG=Os06t0622700-01
Chr06	irgsp1_rep	five_prime_UTR	25041945	25041975	.	+	.	Parent=Os06t0622700-01
Chr06	irgsp1_rep	CDS	25041976	25042415	.	+	0	Parent=Os06t0622700-01
Chr06	irgsp1_rep	CDS	25042819	25043039	.	+	1	Parent=Os06t0622700-01
Chr06	irgsp1_rep	CDS	25043501	25043754	.	+	2	Parent=Os06t0622700-01
Chr06	irgsp1_rep	three_prime_UTR	25043755	25043935	.	+	.	Parent=Os06t0622700-01
Chr06	irgsp1_rep	mRNA	25041945	25043935	.	+	.	ID=Os06t0622700-02;Name=Os06t0622700-02;Locus_id=Os06g0622700;RAP-DB Gene Symbol Synonym(s)=BZIP50%2C OsbZIP60%2C bZIP50%2C OsbZIP50%2C OsbZIP74%2C OsbZIP50-S;RAP-DB Gene Name Synonym(s)=b-ZIP TRANSCRIPTION FACTOR 50%2C b-ZIP transcription factor 60%2C b-ZIP transcription factor 50%2C b-ZIP transcription factor 74;CGSNL Gene Symbol=BZIP50;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 50;Oryzabase Gene Symbol Synonym(s)=OsbZIP60%2C bZIP50%2C OsbZIP50%2C OsbZIP74%2C bZIP74%2C OsbZIP50-S;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 60%2C b-ZIP transcription factor 50%2C b-ZIP transcription factor 74;Note=Active form of bZIP transcription factor%2C Endoplasmic reticulum stress response;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Basic-leucine zipper domain (IPR004827);Manual Curation=April 15%2C 2015;Literature_PMID=22050533,22199238;Oryzabase=9263
Chr06	irgsp1_rep	five_prime_UTR	25041945	25041975	.	+	.	Parent=Os06t0622700-02
Chr06	irgsp1_rep	CDS	25041976	25042415	.	+	0	Parent=Os06t0622700-02
Chr06	irgsp1_rep	CDS	25042819	25043027	.	+	1	Parent=Os06t0622700-02
Chr06	irgsp1_rep	CDS	25043509	25043645	.	+	2	Parent=Os06t0622700-02
Chr06	irgsp1_rep	three_prime_UTR	25043646	25043935	.	+	.	Parent=Os06t0622700-02
Chr06	irgsp1_rep	mRNA	25050900	25054506	.	+	.	ID=Os06t0622800-01;Name=Os06t0622800-01;Locus_id=Os06g0622800;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=AK106454 (DDBJ%2C Best hit);ORF_evidence=NP_195533.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Domain of unknown function DUF1981%2C SEC7 associated (IPR015403),Armadillo-type fold (IPR016024);NIAS_FLcDNA=002-103-F09;Expression=AK106454;TENOR=Os06t0622800-01;KEGG=Os06t0622800-01
Chr06	irgsp1_rep	five_prime_UTR	25050900	25050900	.	+	.	Parent=Os06t0622800-01
Chr06	irgsp1_rep	CDS	25050901	25051010	.	+	0	Parent=Os06t0622800-01
Chr06	irgsp1_rep	CDS	25051116	25051437	.	+	1	Parent=Os06t0622800-01
Chr06	irgsp1_rep	CDS	25051527	25051872	.	+	0	Parent=Os06t0622800-01
Chr06	irgsp1_rep	CDS	25051991	25052649	.	+	2	Parent=Os06t0622800-01
Chr06	irgsp1_rep	CDS	25053176	25053784	.	+	0	Parent=Os06t0622800-01
Chr06	irgsp1_rep	three_prime_UTR	25053785	25053922	.	+	.	Parent=Os06t0622800-01
Chr06	irgsp1_rep	three_prime_UTR	25054012	25054506	.	+	.	Parent=Os06t0622800-01
Chr06	irgsp1_rep	mRNA	25054771	25058817	.	-	.	ID=Os06t0622900-01;Name=Os06t0622900-01;Locus_id=Os06g0622900;Note=Similar to RNA-binding region containing protein 1 (HSRNASEB) (ssDNA binding protein SEB4) (CLL-associated antigen KW-5). Splice isoform 2.;Transcript_evidence=AK065654 (DDBJ%2C Best hit);ORF_evidence=NP_565132.2 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013035J16;Expression=AK065654;TENOR=Os06t0622900-01;KEGG=Os06t0622900-01
Chr06	irgsp1_rep	five_prime_UTR	25058556	25058817	.	-	.	Parent=Os06t0622900-01
Chr06	irgsp1_rep	CDS	25058322	25058555	.	-	0	Parent=Os06t0622900-01
Chr06	irgsp1_rep	CDS	25057696	25057819	.	-	0	Parent=Os06t0622900-01
Chr06	irgsp1_rep	CDS	25056384	25056510	.	-	2	Parent=Os06t0622900-01
Chr06	irgsp1_rep	CDS	25056121	25056157	.	-	1	Parent=Os06t0622900-01
Chr06	irgsp1_rep	CDS	25055794	25056014	.	-	0	Parent=Os06t0622900-01
Chr06	irgsp1_rep	CDS	25055612	25055696	.	-	1	Parent=Os06t0622900-01
Chr06	irgsp1_rep	three_prime_UTR	25055582	25055611	.	-	.	Parent=Os06t0622900-01
Chr06	irgsp1_rep	three_prime_UTR	25055409	25055504	.	-	.	Parent=Os06t0622900-01
Chr06	irgsp1_rep	three_prime_UTR	25054771	25055294	.	-	.	Parent=Os06t0622900-01
Chr06	irgsp1_rep	mRNA	25054931	25058629	.	+	.	ID=Os06t0623050-00;Name=Os06t0623050-00;Locus_id=Os06g0623050;Note=Non-protein coding transcript.;Transcript_evidence=BT016236 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0623050-00
Chr06	irgsp1_rep	exon	25054931	25055273	.	+	.	Parent=Os06t0623050-00
Chr06	irgsp1_rep	exon	25055385	25055502	.	+	.	Parent=Os06t0623050-00
Chr06	irgsp1_rep	exon	25055580	25055699	.	+	.	Parent=Os06t0623050-00
Chr06	irgsp1_rep	exon	25055801	25056068	.	+	.	Parent=Os06t0623050-00
Chr06	irgsp1_rep	exon	25057702	25057814	.	+	.	Parent=Os06t0623050-00
Chr06	irgsp1_rep	exon	25058315	25058629	.	+	.	Parent=Os06t0623050-00
Chr06	irgsp1_rep	mRNA	25066390	25071028	.	-	.	ID=Os06t0623200-01;Name=Os06t0623200-01;Locus_id=Os06g0623200;CGSNL Gene Symbol=CCR28;CGSNL Gene Name=CINNAMOYL-COA REDUCTASE 28;Oryzabase Gene Symbol Synonym(s)=OsCCR28;Oryzabase Gene Name Synonym(s)=Cinnamoyl-CoA reductase 28;Note=Similar to Cinnamoyl-CoA reductase (EC 1.2.1.44).;Transcript_evidence=AK107469 (DDBJ%2C Best hit);ORF_evidence=D2IX48 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=002-129-B02;Oryzabase=22253;Expression=AK107469;TENOR=Os06t0623200-01;KEGG=Os06t0623200-01 (EC:1.2.1.44)
Chr06	irgsp1_rep	five_prime_UTR	25071015	25071028	.	-	.	Parent=Os06t0623200-01
Chr06	irgsp1_rep	CDS	25070849	25071014	.	-	0	Parent=Os06t0623200-01
Chr06	irgsp1_rep	CDS	25070520	25070776	.	-	2	Parent=Os06t0623200-01
Chr06	irgsp1_rep	three_prime_UTR	25070242	25070519	.	-	.	Parent=Os06t0623200-01
Chr06	irgsp1_rep	three_prime_UTR	25069927	25070095	.	-	.	Parent=Os06t0623200-01
Chr06	irgsp1_rep	three_prime_UTR	25069505	25069709	.	-	.	Parent=Os06t0623200-01
Chr06	irgsp1_rep	three_prime_UTR	25066390	25066807	.	-	.	Parent=Os06t0623200-01
Chr06	irgsp1_rep	mRNA	25073667	25076452	.	-	.	ID=Os06t0623300-01;Name=Os06t0623300-01;Locus_id=Os06g0623300;CGSNL Gene Symbol=CCR8;CGSNL Gene Name=CINNAMOYL-COA REDUCTASE 8;Oryzabase Gene Symbol Synonym(s)=OsCCR8;Oryzabase Gene Name Synonym(s)=Cinnamoyl-CoA reductase 8;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK102436 (DDBJ%2C Best hit);ORF_evidence=D2IX48 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033093J18;Oryzabase=22243;Expression=AK102436;TENOR=Os06t0623300-01;KEGG=Os06t0623300-01
Chr06	irgsp1_rep	five_prime_UTR	25076427	25076452	.	-	.	Parent=Os06t0623300-01
Chr06	irgsp1_rep	CDS	25076300	25076426	.	-	0	Parent=Os06t0623300-01
Chr06	irgsp1_rep	CDS	25075657	25075826	.	-	2	Parent=Os06t0623300-01
Chr06	irgsp1_rep	CDS	25075155	25075340	.	-	0	Parent=Os06t0623300-01
Chr06	irgsp1_rep	CDS	25074712	25074874	.	-	0	Parent=Os06t0623300-01
Chr06	irgsp1_rep	CDS	25074274	25074460	.	-	2	Parent=Os06t0623300-01
Chr06	irgsp1_rep	CDS	25073767	25073899	.	-	1	Parent=Os06t0623300-01
Chr06	irgsp1_rep	three_prime_UTR	25073667	25073766	.	-	.	Parent=Os06t0623300-01
Chr06	irgsp1_rep	mRNA	25087044	25090086	.	-	.	ID=Os06t0623600-01;Name=Os06t0623600-01;Locus_id=Os06g0623600;CGSNL Gene Symbol=CCR7;CGSNL Gene Name=CINNAMOYL-COA REDUCTASE 7;Oryzabase Gene Symbol Synonym(s)=OsCCR7;Oryzabase Gene Name Synonym(s)=Cinnamoyl-CoA reductase 7;Note=Similar to Cinnamoyl-CoA reductase (EC 1.2.1.44).;Transcript_evidence=AK073641 (DDBJ%2C Best hit);ORF_evidence=D2IX48 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033052J24;Oryzabase=22242;Expression=AK073641;TENOR=Os06t0623600-01;KEGG=Os06t0623600-01 (EC:1.2.1.44)
Chr06	irgsp1_rep	five_prime_UTR	25090064	25090086	.	-	.	Parent=Os06t0623600-01
Chr06	irgsp1_rep	CDS	25089934	25090063	.	-	0	Parent=Os06t0623600-01
Chr06	irgsp1_rep	CDS	25089590	25089757	.	-	2	Parent=Os06t0623600-01
Chr06	irgsp1_rep	CDS	25089185	25089369	.	-	2	Parent=Os06t0623600-01
Chr06	irgsp1_rep	CDS	25088120	25088282	.	-	0	Parent=Os06t0623600-01
Chr06	irgsp1_rep	CDS	25087589	25087775	.	-	2	Parent=Os06t0623600-01
Chr06	irgsp1_rep	CDS	25087286	25087418	.	-	1	Parent=Os06t0623600-01
Chr06	irgsp1_rep	three_prime_UTR	25087044	25087285	.	-	.	Parent=Os06t0623600-01
Chr06	irgsp1_rep	mRNA	25093242	25094294	.	+	.	ID=Os06t0623700-01;Name=Os06t0623700-01;Locus_id=Os06g0623700;RAP-DB Gene Symbol Synonym(s)=TGW6%2C tgw6;RAP-DB Gene Name Synonym(s)=TOTAL GRAIN WEIGHT6%2C total grain weight6%2C THOUSAND-GRAIN WEIGHT 6;CGSNL Gene Symbol=TGW6;CGSNL Gene Name=TOTAL GRAIN WEIGHT6;Oryzabase Gene Symbol Synonym(s)=tgw6%2C OsSTRL7%2C STRL7;Oryzabase Gene Name Synonym(s)=total grain weight6%2C THOUSAND-GRAIN WEIGHT 6%2C STR-like 7;Note=Protein with indole-3-acetic acid (IAA)-glucose hydrolase activity%2C Regulation of grain length and weight;Transcript_evidence=AB513135;ORF_evidence=Q69U01;GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: strictosidine synthase activity (GO:0016844);InterPro=Strictosidine synthase (IPR004141),Six-bladed beta-propeller%2C TolB-like (IPR011042),Strictosidine synthase%2C conserved region (IPR018119);Manual Curation=July 6%2C 2016;Literature_PMID=23583977;Oryzabase=6464;TENOR=Os06t0623700-00
Chr06	irgsp1_rep	CDS	25093242	25094294	.	+	0	Parent=Os06t0623700-01
Chr06	irgsp1_rep	mRNA	25108484	25108968	.	-	.	ID=Os06t0624000-00;Name=Os06t0624000-00;Locus_id=Os06g0624000;Note=Conserved hypothetical protein.;Transcript_evidence=EU969100 (DDBJ);ORF_evidence=Q69TZ8 (UniProt);TENOR=Os06t0624000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	25108620	25108968	.	-	0	Parent=Os06t0624000-00
Chr06	irgsp1_rep	CDS	25108484	25108566	.	-	2	Parent=Os06t0624000-00
Chr06	irgsp1_rep	mRNA	25122722	25126173	.	+	.	ID=Os06t0624100-00;Name=Os06t0624100-00;Locus_id=Os06g0624100;Oryzabase Gene Symbol Synonym(s)=OsSub51%2C SUB51;Oryzabase Gene Name Synonym(s)=Subtilisin 51%2C SUBTILISIN 51;Note=Similar to predicted protein.;Transcript_evidence=BT067343 (DDBJ);ORF_evidence=Q8H0H9 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);Oryzabase=20135;TENOR=Os06t0624100-00;KEGG=Os06t0624100-00
Chr06	irgsp1_rep	five_prime_UTR	25122722	25122788	.	+	.	Parent=Os06t0624100-00
Chr06	irgsp1_rep	CDS	25122789	25122907	.	+	0	Parent=Os06t0624100-00
Chr06	irgsp1_rep	CDS	25123000	25123097	.	+	1	Parent=Os06t0624100-00
Chr06	irgsp1_rep	CDS	25123201	25123359	.	+	2	Parent=Os06t0624100-00
Chr06	irgsp1_rep	CDS	25123772	25123889	.	+	2	Parent=Os06t0624100-00
Chr06	irgsp1_rep	CDS	25123969	25124503	.	+	1	Parent=Os06t0624100-00
Chr06	irgsp1_rep	CDS	25124600	25124694	.	+	0	Parent=Os06t0624100-00
Chr06	irgsp1_rep	CDS	25124805	25125047	.	+	1	Parent=Os06t0624100-00
Chr06	irgsp1_rep	CDS	25125130	25125244	.	+	1	Parent=Os06t0624100-00
Chr06	irgsp1_rep	CDS	25125321	25125507	.	+	0	Parent=Os06t0624100-00
Chr06	irgsp1_rep	CDS	25125586	25126142	.	+	2	Parent=Os06t0624100-00
Chr06	irgsp1_rep	three_prime_UTR	25126143	25126173	.	+	.	Parent=Os06t0624100-00
Chr06	irgsp1_rep	mRNA	25122311	25127217	.	-	.	ID=Os06t0624200-01;Name=Os06t0624200-01;Locus_id=Os06g0624200;Note=Non-protein coding transcript.;Transcript_evidence=AK069810 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023027G23;TENOR=Os06t0624200-01
Chr06	irgsp1_rep	exon	25125927	25127217	.	-	.	Parent=Os06t0624200-01
Chr06	irgsp1_rep	exon	25125153	25125477	.	-	.	Parent=Os06t0624200-01
Chr06	irgsp1_rep	exon	25123750	25123880	.	-	.	Parent=Os06t0624200-01
Chr06	irgsp1_rep	exon	25122311	25123305	.	-	.	Parent=Os06t0624200-01
Chr06	irgsp1_rep	mRNA	25145594	25148015	.	+	.	ID=Os06t0624700-01;Name=Os06t0624700-01;Locus_id=Os06g0624700;Note=Protein of unknown function DUF23 family protein.;Transcript_evidence=AK110884 (DDBJ%2C Best hit);ORF_evidence=A3BDP7 (UniProt);InterPro=Domain of unknown function DUF23 (IPR008166);NIAS_FLcDNA=002-172-G12;Expression=AK110884;TENOR=Os06t0624700-01;KEGG=Os06t0624700-01
Chr06	irgsp1_rep	five_prime_UTR	25145594	25145625	.	+	.	Parent=Os06t0624700-01
Chr06	irgsp1_rep	CDS	25145626	25145740	.	+	0	Parent=Os06t0624700-01
Chr06	irgsp1_rep	CDS	25145840	25146848	.	+	2	Parent=Os06t0624700-01
Chr06	irgsp1_rep	CDS	25147326	25147671	.	+	1	Parent=Os06t0624700-01
Chr06	irgsp1_rep	three_prime_UTR	25147672	25148015	.	+	.	Parent=Os06t0624700-01
Chr06	irgsp1_rep	mRNA	25145631	25147655	.	-	.	ID=Os06t0624750-00;Name=Os06t0624750-00;Locus_id=Os06g0624750;Note=Hypothetical protein.;Transcript_evidence=tplb0026g02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0624750-00
Chr06	irgsp1_rep	five_prime_UTR	25147318	25147655	.	-	.	Parent=Os06t0624750-00
Chr06	irgsp1_rep	five_prime_UTR	25146189	25146839	.	-	.	Parent=Os06t0624750-00
Chr06	irgsp1_rep	CDS	25145772	25146188	.	-	0	Parent=Os06t0624750-00
Chr06	irgsp1_rep	three_prime_UTR	25145631	25145771	.	-	.	Parent=Os06t0624750-00
Chr06	irgsp1_rep	mRNA	25154307	25155583	.	-	.	ID=Os06t0624850-00;Name=Os06t0624850-00;Locus_id=Os06g0624850;Note=Non-protein coding transcript.;Transcript_evidence=CT836298 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os06t0624850-00
Chr06	irgsp1_rep	exon	25154307	25155583	.	-	.	Parent=Os06t0624850-00
Chr06	irgsp1_rep	mRNA	25158369	25164529	.	+	.	ID=Os06t0624900-01;Name=Os06t0624900-01;Locus_id=Os06g0624900;Note=Similar to zinc-binding family protein.;Transcript_evidence=AK065620 (DDBJ%2C Best hit);ORF_evidence=XP_002890421.1 (RefSeq);InterPro=Protein of unknown function DUF597 (IPR006734);NIAS_FLcDNA=J013030D23;TENOR=Os06t0624900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	25158369	25158475	.	+	.	Parent=Os06t0624900-01
Chr06	irgsp1_rep	five_prime_UTR	25158696	25158788	.	+	.	Parent=Os06t0624900-01
Chr06	irgsp1_rep	five_prime_UTR	25158933	25158946	.	+	.	Parent=Os06t0624900-01
Chr06	irgsp1_rep	CDS	25158947	25159195	.	+	0	Parent=Os06t0624900-01
Chr06	irgsp1_rep	CDS	25159295	25159510	.	+	0	Parent=Os06t0624900-01
Chr06	irgsp1_rep	CDS	25163448	25163744	.	+	0	Parent=Os06t0624900-01
Chr06	irgsp1_rep	three_prime_UTR	25163745	25164529	.	+	.	Parent=Os06t0624900-01
Chr06	irgsp1_rep	mRNA	25158679	25164128	.	+	.	ID=Os06t0624900-02;Name=Os06t0624900-02;Locus_id=Os06g0624900;Note=Similar to predicted protein.;Transcript_evidence=AK061790 (DDBJ%2C Best hit);ORF_evidence=XP_002890421.1 (RefSeq);InterPro=Protein of unknown function DUF597 (IPR006734);NIAS_FLcDNA=001-039-F02;Expression=AK061790;TENOR=Os06t0624900-02;KEGG=Os06t0624900-02
Chr06	irgsp1_rep	five_prime_UTR	25158679	25158788	.	+	.	Parent=Os06t0624900-02
Chr06	irgsp1_rep	five_prime_UTR	25158933	25158946	.	+	.	Parent=Os06t0624900-02
Chr06	irgsp1_rep	CDS	25158947	25159189	.	+	0	Parent=Os06t0624900-02
Chr06	irgsp1_rep	CDS	25159295	25159510	.	+	0	Parent=Os06t0624900-02
Chr06	irgsp1_rep	CDS	25163448	25163744	.	+	0	Parent=Os06t0624900-02
Chr06	irgsp1_rep	three_prime_UTR	25163745	25164128	.	+	.	Parent=Os06t0624900-02
Chr06	irgsp1_rep	mRNA	25158689	25164141	.	+	.	ID=Os06t0624900-03;Name=Os06t0624900-03;Locus_id=Os06g0624900;Note=Similar to zinc-binding family protein.;Transcript_evidence=AK067251 (DDBJ%2C Best hit);ORF_evidence=XP_002890421.1 (RefSeq);InterPro=Protein of unknown function DUF597 (IPR006734);NIAS_FLcDNA=J013099A07;TENOR=Os06t0624900-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	25158689	25158788	.	+	.	Parent=Os06t0624900-03
Chr06	irgsp1_rep	five_prime_UTR	25158933	25158946	.	+	.	Parent=Os06t0624900-03
Chr06	irgsp1_rep	CDS	25158947	25159195	.	+	0	Parent=Os06t0624900-03
Chr06	irgsp1_rep	CDS	25159295	25159510	.	+	0	Parent=Os06t0624900-03
Chr06	irgsp1_rep	CDS	25163448	25163744	.	+	0	Parent=Os06t0624900-03
Chr06	irgsp1_rep	three_prime_UTR	25163745	25164141	.	+	.	Parent=Os06t0624900-03
Chr06	irgsp1_rep	mRNA	25158967	25163735	.	-	.	ID=Os06t0624950-00;Name=Os06t0624950-00;Locus_id=Os06g0624950;Note=Non-protein coding transcript.;Transcript_evidence=tplb0006k21 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os06t0624950-00
Chr06	irgsp1_rep	exon	25163538	25163735	.	-	.	Parent=Os06t0624950-00
Chr06	irgsp1_rep	exon	25159313	25159528	.	-	.	Parent=Os06t0624950-00
Chr06	irgsp1_rep	exon	25158967	25159226	.	-	.	Parent=Os06t0624950-00
Chr06	irgsp1_rep	mRNA	25182993	25184931	.	-	.	ID=Os06t0625200-00;Name=Os06t0625200-00;Locus_id=Os06g0625200;Oryzabase Gene Symbol Synonym(s)=OsLysM-RLK6%2C OsLYK3;Oryzabase Gene Name Synonym(s)=LysM receptor-like kinase 6%2C LysM-type receptor-like kinase3;Note=Protein kinase-like domain containing protein.;Transcript_evidence=AK370300 (DDBJ);ORF_evidence=NP_001147941.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);Oryzabase=10925;TENOR=Os06t0625200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	25184928	25184931	.	-	.	Parent=Os06t0625200-00
Chr06	irgsp1_rep	CDS	25183035	25184927	.	-	0	Parent=Os06t0625200-00
Chr06	irgsp1_rep	three_prime_UTR	25182993	25183034	.	-	.	Parent=Os06t0625200-00
Chr06	irgsp1_rep	mRNA	25200331	25210590	.	-	.	ID=Os06t0625400-01;Name=Os06t0625400-01;Locus_id=Os06g0625400;CGSNL Gene Symbol=SPP;CGSNL Gene Name=STROMAL PROCESSING PEPTIDASE;Oryzabase Gene Symbol Synonym(s)=OsSPP;Oryzabase Gene Name Synonym(s)=stromal processing peptidase;Note=Similar to Metalloendopeptidase.;Transcript_evidence=AK066566 (DDBJ%2C Best hit);ORF_evidence=NP_199054.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: catalytic activity (GO:0003824),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: metal ion binding (GO:0046872);InterPro=Peptidase M16%2C C-terminal (IPR007863),Peptidase M16%2C core (IPR011237),Metalloenzyme%2C LuxS/M16 peptidase-like%2C metal-binding (IPR011249);NIAS_FLcDNA=J013073O18;Oryzabase=23514;Expression=AK066566;TENOR=Os06t0625400-01;KEGG=Os06t0625400-01
Chr06	irgsp1_rep	five_prime_UTR	25210347	25210590	.	-	.	Parent=Os06t0625400-01
Chr06	irgsp1_rep	five_prime_UTR	25210025	25210220	.	-	.	Parent=Os06t0625400-01
Chr06	irgsp1_rep	five_prime_UTR	25209342	25209382	.	-	.	Parent=Os06t0625400-01
Chr06	irgsp1_rep	CDS	25209328	25209341	.	-	0	Parent=Os06t0625400-01
Chr06	irgsp1_rep	CDS	25207238	25207478	.	-	1	Parent=Os06t0625400-01
Chr06	irgsp1_rep	CDS	25206647	25206748	.	-	0	Parent=Os06t0625400-01
Chr06	irgsp1_rep	CDS	25206113	25206247	.	-	0	Parent=Os06t0625400-01
Chr06	irgsp1_rep	CDS	25205532	25205756	.	-	0	Parent=Os06t0625400-01
Chr06	irgsp1_rep	CDS	25205195	25205398	.	-	0	Parent=Os06t0625400-01
Chr06	irgsp1_rep	CDS	25204892	25205062	.	-	0	Parent=Os06t0625400-01
Chr06	irgsp1_rep	CDS	25204619	25204768	.	-	0	Parent=Os06t0625400-01
Chr06	irgsp1_rep	CDS	25204107	25204244	.	-	0	Parent=Os06t0625400-01
Chr06	irgsp1_rep	CDS	25203769	25203996	.	-	0	Parent=Os06t0625400-01
Chr06	irgsp1_rep	CDS	25203463	25203615	.	-	0	Parent=Os06t0625400-01
Chr06	irgsp1_rep	CDS	25203166	25203289	.	-	0	Parent=Os06t0625400-01
Chr06	irgsp1_rep	CDS	25202936	25203053	.	-	2	Parent=Os06t0625400-01
Chr06	irgsp1_rep	CDS	25202552	25202672	.	-	1	Parent=Os06t0625400-01
Chr06	irgsp1_rep	CDS	25202374	25202454	.	-	0	Parent=Os06t0625400-01
Chr06	irgsp1_rep	CDS	25202093	25202194	.	-	0	Parent=Os06t0625400-01
Chr06	irgsp1_rep	CDS	25201199	25201349	.	-	0	Parent=Os06t0625400-01
Chr06	irgsp1_rep	CDS	25200920	25201002	.	-	2	Parent=Os06t0625400-01
Chr06	irgsp1_rep	three_prime_UTR	25200885	25200919	.	-	.	Parent=Os06t0625400-01
Chr06	irgsp1_rep	three_prime_UTR	25200331	25200791	.	-	.	Parent=Os06t0625400-01
Chr06	irgsp1_rep	mRNA	25202059	25207810	.	-	.	ID=Os06t0625400-02;Name=Os06t0625400-02;Locus_id=Os06g0625400;CGSNL Gene Symbol=SPP;CGSNL Gene Name=STROMAL PROCESSING PEPTIDASE;Oryzabase Gene Symbol Synonym(s)=OsSPP;Oryzabase Gene Name Synonym(s)=stromal processing peptidase;Note=Similar to cDNA clone:J013073O18%2C full insert sequence.;Transcript_evidence=AK063424 (DDBJ%2C Best hit);ORF_evidence=B7ECD6 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: catalytic activity (GO:0003824),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: metal ion binding (GO:0046872);InterPro=Peptidase M16%2C C-terminal (IPR007863),Peptidase M16%2C core (IPR011237),Metalloenzyme%2C LuxS/M16 peptidase-like%2C metal-binding (IPR011249);NIAS_FLcDNA=001-115-C08;Oryzabase=23514;TENOR=Os06t0625400-02
Chr06	irgsp1_rep	five_prime_UTR	25207631	25207810	.	-	.	Parent=Os06t0625400-02
Chr06	irgsp1_rep	five_prime_UTR	25207493	25207534	.	-	.	Parent=Os06t0625400-02
Chr06	irgsp1_rep	CDS	25207238	25207492	.	-	0	Parent=Os06t0625400-02
Chr06	irgsp1_rep	CDS	25206647	25206748	.	-	0	Parent=Os06t0625400-02
Chr06	irgsp1_rep	CDS	25206113	25206247	.	-	0	Parent=Os06t0625400-02
Chr06	irgsp1_rep	CDS	25205532	25205756	.	-	0	Parent=Os06t0625400-02
Chr06	irgsp1_rep	CDS	25205195	25205398	.	-	0	Parent=Os06t0625400-02
Chr06	irgsp1_rep	CDS	25204892	25205062	.	-	0	Parent=Os06t0625400-02
Chr06	irgsp1_rep	CDS	25204619	25204768	.	-	0	Parent=Os06t0625400-02
Chr06	irgsp1_rep	CDS	25204107	25204244	.	-	0	Parent=Os06t0625400-02
Chr06	irgsp1_rep	CDS	25203769	25203996	.	-	0	Parent=Os06t0625400-02
Chr06	irgsp1_rep	CDS	25203463	25203615	.	-	0	Parent=Os06t0625400-02
Chr06	irgsp1_rep	CDS	25203166	25203289	.	-	0	Parent=Os06t0625400-02
Chr06	irgsp1_rep	CDS	25202936	25203053	.	-	2	Parent=Os06t0625400-02
Chr06	irgsp1_rep	CDS	25202552	25202672	.	-	1	Parent=Os06t0625400-02
Chr06	irgsp1_rep	CDS	25202374	25202454	.	-	0	Parent=Os06t0625400-02
Chr06	irgsp1_rep	CDS	25202059	25202194	.	-	0	Parent=Os06t0625400-02
Chr06	irgsp1_rep	mRNA	25214052	25215191	.	+	.	ID=Os06t0625500-01;Name=Os06t0625500-01;Locus_id=Os06g0625500;CGSNL Gene Symbol=PRXIIE1;CGSNL Gene Name=TYPE-II PEROXIREDOXIN E1;Oryzabase Gene Symbol Synonym(s)=OsPrxII E1%2C PrxII E1%2C OsPrxIIE1%2C PrxIIE1;Oryzabase Gene Name Synonym(s)=Type-II Prx E1%2C Type-II peroxiredoxin E1;Note=Similar to Thioredoxin peroxidase.;Transcript_evidence=AK068955 (DDBJ%2C Best hit),AK058459 (DDBJ%2C Best hit);ORF_evidence=B7E2V4 (UniProt);GO=Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Thioredoxin-like fold (IPR012336),Redoxin (IPR013740);NIAS_FLcDNA=J023003C09,001-015-H12;Oryzabase=21750;Expression=AK068955;TENOR=Os06t0625500-01;KEGG=Os06t0625500-01 (EC:1.11.1.15)
Chr06	irgsp1_rep	five_prime_UTR	25214052	25214147	.	+	.	Parent=Os06t0625500-01
Chr06	irgsp1_rep	CDS	25214148	25214846	.	+	0	Parent=Os06t0625500-01
Chr06	irgsp1_rep	three_prime_UTR	25214847	25215191	.	+	.	Parent=Os06t0625500-01
Chr06	irgsp1_rep	mRNA	25214148	25215245	.	+	.	ID=Os06t0625500-03;Name=Os06t0625500-03;Locus_id=Os06g0625500;CGSNL Gene Symbol=PRXIIE1;CGSNL Gene Name=TYPE-II PEROXIREDOXIN E1;Oryzabase Gene Symbol Synonym(s)=OsPrxII E1%2C PrxII E1%2C OsPrxIIE1%2C PrxIIE1;Oryzabase Gene Name Synonym(s)=Type-II Prx E1%2C Type-II peroxiredoxin E1;Note=Similar to Thioredoxin peroxidase.;Transcript_evidence=AK104130 (DDBJ%2C Best hit);ORF_evidence=Q69TY4 (UniProt);GO=Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Thioredoxin-like fold (IPR012336),Redoxin (IPR013740);NIAS_FLcDNA=006-203-H07;Oryzabase=21750;Expression=AK104130;TENOR=Os06t0625500-03;KEGG=Os06t0625500-03 (EC:1.11.1.15)
Chr06	irgsp1_rep	CDS	25214148	25214846	.	+	0	Parent=Os06t0625500-03
Chr06	irgsp1_rep	three_prime_UTR	25214847	25215245	.	+	.	Parent=Os06t0625500-03
Chr06	irgsp1_rep	mRNA	25231214	25235848	.	+	.	ID=Os06t0625700-01;Name=Os06t0625700-01;Locus_id=Os06g0625700;CGSNL Gene Symbol=CSLA9;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE A9;Oryzabase Gene Symbol Synonym(s)=OsCslA9%2C OsCSLA9;Note=Glycosyl transferase%2C family 2 domain containing protein.;Transcript_evidence=AK242831 (DDBJ%2C Best hit);ORF_evidence=B7ETH8 (UniProt);InterPro=Glycosyl transferase%2C family 2 (IPR001173);NIAS_FLcDNA=J090067L08;Oryzabase=13887;TENOR=Os06t0625700-01;KEGG=Os06t0625700-01
Chr06	irgsp1_rep	five_prime_UTR	25231214	25231325	.	+	.	Parent=Os06t0625700-01
Chr06	irgsp1_rep	CDS	25231326	25231640	.	+	0	Parent=Os06t0625700-01
Chr06	irgsp1_rep	CDS	25231775	25231873	.	+	0	Parent=Os06t0625700-01
Chr06	irgsp1_rep	CDS	25232629	25232881	.	+	0	Parent=Os06t0625700-01
Chr06	irgsp1_rep	CDS	25233716	25233826	.	+	2	Parent=Os06t0625700-01
Chr06	irgsp1_rep	CDS	25234210	25234346	.	+	2	Parent=Os06t0625700-01
Chr06	irgsp1_rep	CDS	25234473	25234586	.	+	0	Parent=Os06t0625700-01
Chr06	irgsp1_rep	CDS	25234677	25234876	.	+	0	Parent=Os06t0625700-01
Chr06	irgsp1_rep	CDS	25235018	25235212	.	+	1	Parent=Os06t0625700-01
Chr06	irgsp1_rep	CDS	25235288	25235447	.	+	1	Parent=Os06t0625700-01
Chr06	irgsp1_rep	three_prime_UTR	25235448	25235848	.	+	.	Parent=Os06t0625700-01
Chr06	irgsp1_rep	mRNA	25231351	25232789	.	-	.	ID=Os06t0625733-00;Name=Os06t0625733-00;Locus_id=Os06g0625733;Note=Hypothetical protein.;Transcript_evidence=BT086854 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0625733-00
Chr06	irgsp1_rep	five_prime_UTR	25232739	25232789	.	-	.	Parent=Os06t0625733-00
Chr06	irgsp1_rep	CDS	25232612	25232738	.	-	0	Parent=Os06t0625733-00
Chr06	irgsp1_rep	CDS	25231770	25231856	.	-	2	Parent=Os06t0625733-00
Chr06	irgsp1_rep	CDS	25231523	25231635	.	-	2	Parent=Os06t0625733-00
Chr06	irgsp1_rep	three_prime_UTR	25231351	25231522	.	-	.	Parent=Os06t0625733-00
Chr06	irgsp1_rep	mRNA	25234471	25235158	.	-	.	ID=Os06t0625766-00;Name=Os06t0625766-00;Locus_id=Os06g0625766;Note=Non-protein coding transcript.;Transcript_evidence=EU946219 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0625766-00
Chr06	irgsp1_rep	exon	25234940	25235158	.	-	.	Parent=Os06t0625766-00
Chr06	irgsp1_rep	exon	25234471	25234885	.	-	.	Parent=Os06t0625766-00
Chr06	irgsp1_rep	mRNA	25235825	25238208	.	-	.	ID=Os06t0625800-01;Name=Os06t0625800-01;Locus_id=Os06g0625800;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK120023 (DDBJ%2C Best hit);ORF_evidence=B9FQ04 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=002-186-C06;Expression=AK120023;TENOR=Os06t0625800-01;KEGG=Os06t0625800-01
Chr06	irgsp1_rep	five_prime_UTR	25238073	25238208	.	-	.	Parent=Os06t0625800-01
Chr06	irgsp1_rep	CDS	25236771	25238072	.	-	0	Parent=Os06t0625800-01
Chr06	irgsp1_rep	three_prime_UTR	25235825	25236770	.	-	.	Parent=Os06t0625800-01
Chr06	irgsp1_rep	mRNA	25238339	25242691	.	-	.	ID=Os06t0625900-01;Name=Os06t0625900-01;Locus_id=Os06g0625900;RAP-DB Gene Symbol Synonym(s)=HAK10%2C OsHAK10;RAP-DB Gene Name Synonym(s)=HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 10%2C High-affinity Potassium(K+) Transporter 10%2C Potassium transporter 10;CGSNL Gene Symbol=HAK10;CGSNL Gene Name=HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 10;Oryzabase Gene Symbol Synonym(s)=OsHAK10;Oryzabase Gene Name Synonym(s)=High-affinity Potassium(K+) Transporter 10%2C Potassium transporter 10;Note=Potassium transporter%2C Salt stress response%2C Alkali tolerance;Transcript_evidence=AJ427972;ORF_evidence=Q67VS5;GO=Biological Process: potassium ion transmembrane transport (GO:0071805),Molecular Function: potassium ion transmembrane transporter activity (GO:0015079),Cellular Component: membrane (GO:0016020);InterPro=Potassium transporter (IPR003855);Manual Curation=June 10%2C 2015;Literature_PMID=12376644,22655071,23082824;Oryzabase=8664;TENOR=Os06t0625900-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	25242638	25242691	.	-	0	Parent=Os06t0625900-01
Chr06	irgsp1_rep	CDS	25241877	25242444	.	-	0	Parent=Os06t0625900-01
Chr06	irgsp1_rep	CDS	25241732	25241785	.	-	2	Parent=Os06t0625900-01
Chr06	irgsp1_rep	CDS	25240470	25240730	.	-	2	Parent=Os06t0625900-01
Chr06	irgsp1_rep	CDS	25240333	25240385	.	-	2	Parent=Os06t0625900-01
Chr06	irgsp1_rep	CDS	25240096	25240219	.	-	0	Parent=Os06t0625900-01
Chr06	irgsp1_rep	CDS	25239743	25239997	.	-	2	Parent=Os06t0625900-01
Chr06	irgsp1_rep	CDS	25239208	25239614	.	-	2	Parent=Os06t0625900-01
Chr06	irgsp1_rep	CDS	25238339	25239094	.	-	0	Parent=Os06t0625900-01
Chr06	irgsp1_rep	mRNA	25269145	25270617	.	-	.	ID=Os06t0626200-01;Name=Os06t0626200-01;Locus_id=Os06g0626200;Note=Similar to cDNA%2C clone: J065099M17%2C full insert sequence.;Transcript_evidence=AK119654 (DDBJ%2C Best hit);ORF_evidence=B7F8L7 (UniProt);NIAS_FLcDNA=002-130-H02;Expression=AK119654;TENOR=Os06t0626200-01;KEGG=Os06t0626200-01
Chr06	irgsp1_rep	five_prime_UTR	25270286	25270617	.	-	.	Parent=Os06t0626200-01
Chr06	irgsp1_rep	CDS	25269935	25270285	.	-	0	Parent=Os06t0626200-01
Chr06	irgsp1_rep	three_prime_UTR	25269145	25269934	.	-	.	Parent=Os06t0626200-01
Chr06	irgsp1_rep	mRNA	25269774	25270562	.	-	.	ID=Os06t0626200-02;Name=Os06t0626200-02;Locus_id=Os06g0626200;Note=Similar to cDNA%2C clone: J065099M17%2C full insert sequence.;Transcript_evidence=AK121077 (DDBJ%2C Best hit);ORF_evidence=B7F8L7 (UniProt);NIAS_FLcDNA=J023062F04;Expression=AK121077;TENOR=Os06t0626200-02;KEGG=Os06t0626200-02
Chr06	irgsp1_rep	five_prime_UTR	25270286	25270562	.	-	.	Parent=Os06t0626200-02
Chr06	irgsp1_rep	CDS	25269935	25270285	.	-	0	Parent=Os06t0626200-02
Chr06	irgsp1_rep	three_prime_UTR	25269774	25269934	.	-	.	Parent=Os06t0626200-02
Chr06	irgsp1_rep	mRNA	25289149	25292027	.	-	.	ID=Os06t0626466-01;Name=Os06t0626466-01;Locus_id=Os06g0626466;Note=Hypothetical conserved gene.;Transcript_evidence=AK288163 (DDBJ%2C Best hit);ORF_evidence=B9EWT6 (UniProt);NIAS_FLcDNA=J090002A03;TENOR=Os06t0626466-01;KEGG=Os06t0626466-01
Chr06	irgsp1_rep	five_prime_UTR	25291983	25292027	.	-	.	Parent=Os06t0626466-01
Chr06	irgsp1_rep	CDS	25291556	25291982	.	-	0	Parent=Os06t0626466-01
Chr06	irgsp1_rep	CDS	25290942	25290982	.	-	2	Parent=Os06t0626466-01
Chr06	irgsp1_rep	three_prime_UTR	25290904	25290941	.	-	.	Parent=Os06t0626466-01
Chr06	irgsp1_rep	three_prime_UTR	25290330	25290814	.	-	.	Parent=Os06t0626466-01
Chr06	irgsp1_rep	three_prime_UTR	25290141	25290239	.	-	.	Parent=Os06t0626466-01
Chr06	irgsp1_rep	three_prime_UTR	25289910	25290047	.	-	.	Parent=Os06t0626466-01
Chr06	irgsp1_rep	three_prime_UTR	25289606	25289696	.	-	.	Parent=Os06t0626466-01
Chr06	irgsp1_rep	three_prime_UTR	25289149	25289489	.	-	.	Parent=Os06t0626466-01
Chr06	irgsp1_rep	mRNA	25292060	25293333	.	-	.	ID=Os06t0626600-01;Name=Os06t0626600-01;Locus_id=Os06g0626600;Note=Sulfotransferase family protein.;Transcript_evidence=AK109408 (DDBJ%2C Best hit);ORF_evidence=Q01HP8 (UniProt);GO=Molecular Function: sulfotransferase activity (GO:0008146);InterPro=Sulfotransferase domain (IPR000863);NIAS_FLcDNA=006-303-D04;Expression=AK109408;TENOR=Os06t0626600-01;KEGG=Os06t0626600-01 (EC:2.8.2.-)
Chr06	irgsp1_rep	five_prime_UTR	25293332	25293333	.	-	.	Parent=Os06t0626600-01
Chr06	irgsp1_rep	CDS	25292216	25293331	.	-	0	Parent=Os06t0626600-01
Chr06	irgsp1_rep	three_prime_UTR	25292060	25292215	.	-	.	Parent=Os06t0626600-01
Chr06	irgsp1_rep	mRNA	25296195	25297316	.	-	.	ID=Os06t0626700-00;Name=Os06t0626700-00;Locus_id=Os06g0626700;Note=Isopenicillin N synthase family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=P93403 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Isopenicillin N synthase (IPR002283),Oxoglutarate/iron-dependent oxygenase (IPR005123);TENOR=Os06t0626700-00;KEGG=Os06t0626700-00
Chr06	irgsp1_rep	CDS	25296195	25297316	.	-	0	Parent=Os06t0626700-00
Chr06	irgsp1_rep	mRNA	25296245	25296924	.	+	.	ID=Os06t0626733-00;Name=Os06t0626733-00;Locus_id=Os06g0626733;Note=Hypothetical protein.;Transcript_evidence=tplb0008n13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0626733-00
Chr06	irgsp1_rep	five_prime_UTR	25296245	25296695	.	+	.	Parent=Os06t0626733-00
Chr06	irgsp1_rep	CDS	25296696	25296924	.	+	0	Parent=Os06t0626733-00
Chr06	irgsp1_rep	mRNA	25298782	25299517	.	+	.	ID=Os06t0626766-00;Name=Os06t0626766-00;Locus_id=Os06g0626766;Note=Conserved hypothetical protein.;Transcript_evidence=EU307115 (DDBJ);ORF_evidence=Q8S7G3 (UniProt);TENOR=Os06t0626766-00
Chr06	irgsp1_rep	five_prime_UTR	25298782	25298806	.	+	.	Parent=Os06t0626766-00
Chr06	irgsp1_rep	CDS	25298807	25299517	.	+	0	Parent=Os06t0626766-00
Chr06	irgsp1_rep	mRNA	25305246	25305643	.	-	.	ID=Os06t0626950-00;Name=Os06t0626950-00;Locus_id=Os06g0626950;Note=Basic leucine zipper domain containing protein.;Transcript_evidence=AB334129 (DDBJ);ORF_evidence=XP_002512945.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic leucine zipper (IPR011700);TENOR=Os06t0626950-00
Chr06	irgsp1_rep	CDS	25305266	25305643	.	-	0	Parent=Os06t0626950-00
Chr06	irgsp1_rep	three_prime_UTR	25305246	25305265	.	-	.	Parent=Os06t0626950-00
Chr06	irgsp1_rep	mRNA	25315268	25316313	.	-	.	ID=Os06t0627001-00;Name=Os06t0627001-00;Locus_id=Os06g0627001;Note=Conserved hypothetical protein.;Transcript_evidence=CT837527 (DDBJ%2C Best hit);ORF_evidence=C8TFB7 (UniProt);TENOR=Os06t0627001-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	25315626	25316313	.	-	.	Parent=Os06t0627001-00
Chr06	irgsp1_rep	five_prime_UTR	25315373	25315610	.	-	.	Parent=Os06t0627001-00
Chr06	irgsp1_rep	CDS	25315283	25315372	.	-	0	Parent=Os06t0627001-00
Chr06	irgsp1_rep	three_prime_UTR	25315268	25315282	.	-	.	Parent=Os06t0627001-00
Chr06	irgsp1_rep	mRNA	25315693	25316400	.	+	.	ID=Os06t0627100-01;Name=Os06t0627100-01;Locus_id=Os06g0627100;Note=Conserved hypothetical protein.;Transcript_evidence=AK241607 (DDBJ%2C Best hit);ORF_evidence=NP_001174912.1 (RefSeq);NIAS_FLcDNA=J065185B08;TENOR=Os06t0627100-01;KEGG=Os06t0627100-01
Chr06	irgsp1_rep	five_prime_UTR	25315693	25315843	.	+	.	Parent=Os06t0627100-01
Chr06	irgsp1_rep	CDS	25315844	25316155	.	+	0	Parent=Os06t0627100-01
Chr06	irgsp1_rep	three_prime_UTR	25316156	25316400	.	+	.	Parent=Os06t0627100-01
Chr06	irgsp1_rep	mRNA	25342428	25344083	.	-	.	ID=Os06t0627400-01;Name=Os06t0627400-01;Locus_id=Os06g0627400;Note=Conserved hypothetical protein.;Transcript_evidence=AK288185 (DDBJ%2C Best hit),AK242755 (DDBJ%2C Best hit);ORF_evidence=NP_001174913.1 (RefSeq);NIAS_FLcDNA=J090006B06,J090051A21;TENOR=Os06t0627400-01;KEGG=Os06t0627400-01
Chr06	irgsp1_rep	five_prime_UTR	25343970	25344083	.	-	.	Parent=Os06t0627400-01
Chr06	irgsp1_rep	CDS	25343337	25343969	.	-	0	Parent=Os06t0627400-01
Chr06	irgsp1_rep	three_prime_UTR	25342428	25343336	.	-	.	Parent=Os06t0627400-01
Chr06	irgsp1_rep	mRNA	25347186	25348647	.	-	.	ID=Os06t0627500-01;Name=Os06t0627500-01;Locus_id=Os06g0627500;Note=Leucine-rich repeat%2C plant specific containing protein.;Transcript_evidence=AK101725 (DDBJ%2C Best hit);ORF_evidence=A3BDQ8 (UniProt);NIAS_FLcDNA=J033061C03;Expression=AK101725;TENOR=Os06t0627500-01;KEGG=Os06t0627500-01
Chr06	irgsp1_rep	five_prime_UTR	25348636	25348647	.	-	.	Parent=Os06t0627500-01
Chr06	irgsp1_rep	CDS	25347304	25348635	.	-	0	Parent=Os06t0627500-01
Chr06	irgsp1_rep	three_prime_UTR	25347186	25347303	.	-	.	Parent=Os06t0627500-01
Chr06	irgsp1_rep	mRNA	25388856	25391421	.	+	.	ID=Os06t0628032-00;Name=Os06t0628032-00;Locus_id=Os06g0628032;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q67VV0 (UniProt);TENOR=Os06t0628032-00
Chr06	irgsp1_rep	CDS	25388856	25388897	.	+	0	Parent=Os06t0628032-00
Chr06	irgsp1_rep	CDS	25389900	25389950	.	+	0	Parent=Os06t0628032-00
Chr06	irgsp1_rep	CDS	25390038	25390196	.	+	0	Parent=Os06t0628032-00
Chr06	irgsp1_rep	CDS	25390268	25390399	.	+	0	Parent=Os06t0628032-00
Chr06	irgsp1_rep	CDS	25391380	25391421	.	+	0	Parent=Os06t0628032-00
Chr06	irgsp1_rep	mRNA	25390554	25390950	.	+	.	ID=Os06t0628150-00;Name=Os06t0628150-00;Locus_id=Os06g0628150;Note=Non-protein coding transcript.;Transcript_evidence=CT836334 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os06t0628150-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	exon	25390554	25390950	.	+	.	Parent=Os06t0628150-00
Chr06	irgsp1_rep	mRNA	25410601	25418246	.	-	.	ID=Os06t0628500-00;Name=Os06t0628500-00;Locus_id=Os06g0628500;CGSNL Gene Symbol=BGAL15;CGSNL Gene Name=BETA-GALACTOSIDASE 15;Oryzabase Gene Symbol Synonym(s)=OsBgal15%2C OsBGal15;Oryzabase Gene Name Synonym(s)=Beta-galactosidase 13%2C Lactase 13;Note=Similar to Beta-galactosidase.;Transcript_evidence=EU051629 (DDBJ%2C Secondary hit);ORF_evidence=A2YF97 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 35 (IPR001944),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 35%2C conserved site (IPR019801);Oryzabase=8289;TENOR=Os06t0628500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	25418067	25418246	.	-	0	Parent=Os06t0628500-00
Chr06	irgsp1_rep	CDS	25417118	25417213	.	-	0	Parent=Os06t0628500-00
Chr06	irgsp1_rep	CDS	25415890	25416002	.	-	0	Parent=Os06t0628500-00
Chr06	irgsp1_rep	CDS	25415722	25415788	.	-	1	Parent=Os06t0628500-00
Chr06	irgsp1_rep	CDS	25414025	25414117	.	-	0	Parent=Os06t0628500-00
Chr06	irgsp1_rep	CDS	25413757	25413909	.	-	0	Parent=Os06t0628500-00
Chr06	irgsp1_rep	CDS	25413546	25413634	.	-	0	Parent=Os06t0628500-00
Chr06	irgsp1_rep	CDS	25413328	25413421	.	-	1	Parent=Os06t0628500-00
Chr06	irgsp1_rep	three_prime_UTR	25413316	25413327	.	-	.	Parent=Os06t0628500-00
Chr06	irgsp1_rep	three_prime_UTR	25413140	25413227	.	-	.	Parent=Os06t0628500-00
Chr06	irgsp1_rep	three_prime_UTR	25412907	25413025	.	-	.	Parent=Os06t0628500-00
Chr06	irgsp1_rep	three_prime_UTR	25412613	25412774	.	-	.	Parent=Os06t0628500-00
Chr06	irgsp1_rep	three_prime_UTR	25412289	25412485	.	-	.	Parent=Os06t0628500-00
Chr06	irgsp1_rep	three_prime_UTR	25412084	25412172	.	-	.	Parent=Os06t0628500-00
Chr06	irgsp1_rep	three_prime_UTR	25411852	25411961	.	-	.	Parent=Os06t0628500-00
Chr06	irgsp1_rep	three_prime_UTR	25411646	25411759	.	-	.	Parent=Os06t0628500-00
Chr06	irgsp1_rep	three_prime_UTR	25411287	25411394	.	-	.	Parent=Os06t0628500-00
Chr06	irgsp1_rep	three_prime_UTR	25410601	25411203	.	-	.	Parent=Os06t0628500-00
Chr06	irgsp1_rep	mRNA	25441098	25447046	.	+	.	ID=Os06t0629362-01;Name=Os06t0629362-01;Locus_id=Os06g0629362;Note=Conserved hypothetical protein.;Transcript_evidence=AK288209 (DDBJ%2C Best hit);ORF_evidence=Q943G5 (UniProt);NIAS_FLcDNA=J090009E19;TENOR=Os06t0629362-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	25441098	25445316	.	+	.	Parent=Os06t0629362-01
Chr06	irgsp1_rep	CDS	25445317	25445622	.	+	0	Parent=Os06t0629362-01
Chr06	irgsp1_rep	three_prime_UTR	25445623	25447046	.	+	.	Parent=Os06t0629362-01
Chr06	irgsp1_rep	mRNA	25475529	25476093	.	+	.	ID=Os06t0629687-00;Name=Os06t0629687-00;Locus_id=Os06g0629687;Note=Hypothetical gene.;Transcript_evidence=CT834957 (DDBJ%2C Secondary hit);ORF_evidence=B9FQ15 (UniProt);TENOR=Os06t0629687-00
Chr06	irgsp1_rep	five_prime_UTR	25475529	25475577	.	+	.	Parent=Os06t0629687-00
Chr06	irgsp1_rep	CDS	25475578	25475675	.	+	0	Parent=Os06t0629687-00
Chr06	irgsp1_rep	CDS	25475699	25476080	.	+	1	Parent=Os06t0629687-00
Chr06	irgsp1_rep	three_prime_UTR	25476081	25476093	.	+	.	Parent=Os06t0629687-00
Chr06	irgsp1_rep	mRNA	25498385	25501058	.	+	.	ID=Os06t0630300-01;Name=Os06t0630300-01;Locus_id=Os06g0630300;Note=Protein of unknown function DUF1950 domain containing protein.;Transcript_evidence=AK071675 (DDBJ%2C Best hit);ORF_evidence=Q9LUJ3 (UniProt);InterPro=Protein of unknown function DUF1950 (IPR015270);NIAS_FLcDNA=J023105O05;Expression=AK071675;TENOR=Os06t0630300-01;KEGG=Os06t0630300-01
Chr06	irgsp1_rep	five_prime_UTR	25498385	25498577	.	+	.	Parent=Os06t0630300-01
Chr06	irgsp1_rep	five_prime_UTR	25498694	25498695	.	+	.	Parent=Os06t0630300-01
Chr06	irgsp1_rep	CDS	25498696	25498840	.	+	0	Parent=Os06t0630300-01
Chr06	irgsp1_rep	CDS	25500541	25500917	.	+	2	Parent=Os06t0630300-01
Chr06	irgsp1_rep	three_prime_UTR	25500918	25501058	.	+	.	Parent=Os06t0630300-01
Chr06	irgsp1_rep	mRNA	25498385	25501725	.	+	.	ID=Os06t0630300-02;Name=Os06t0630300-02;Locus_id=Os06g0630300;Note=Conserved hypothetical protein.;Transcript_evidence=AK107079 (DDBJ%2C Best hit);ORF_evidence=B8B0F6 (UniProt);NIAS_FLcDNA=002-121-F07;Expression=AK107079;TENOR=Os06t0630300-02;KEGG=Os06t0630300-02
Chr06	irgsp1_rep	five_prime_UTR	25498385	25498577	.	+	.	Parent=Os06t0630300-02
Chr06	irgsp1_rep	five_prime_UTR	25498694	25498695	.	+	.	Parent=Os06t0630300-02
Chr06	irgsp1_rep	CDS	25498696	25498840	.	+	0	Parent=Os06t0630300-02
Chr06	irgsp1_rep	CDS	25501137	25501531	.	+	2	Parent=Os06t0630300-02
Chr06	irgsp1_rep	three_prime_UTR	25501532	25501725	.	+	.	Parent=Os06t0630300-02
Chr06	irgsp1_rep	mRNA	25524538	25525259	.	-	.	ID=Os06t0630850-01;Name=Os06t0630850-01;Locus_id=Os06g0630850;Note=Conserved hypothetical protein.;Transcript_evidence=AK111278 (DDBJ%2C Best hit);ORF_evidence=B9FQ13 (UniProt);NIAS_FLcDNA=002-180-G11;Expression=AK111278;TENOR=Os06t0630850-01;KEGG=Os06t0630850-01
Chr06	irgsp1_rep	five_prime_UTR	25525028	25525259	.	-	.	Parent=Os06t0630850-01
Chr06	irgsp1_rep	CDS	25524608	25525027	.	-	0	Parent=Os06t0630850-01
Chr06	irgsp1_rep	three_prime_UTR	25524538	25524607	.	-	.	Parent=Os06t0630850-01
Chr06	irgsp1_rep	mRNA	25544480	25546478	.	+	.	ID=Os06t0631300-01;Name=Os06t0631300-01;Locus_id=Os06g0631300;Note=Conserved hypothetical protein.;Transcript_evidence=AK106231 (DDBJ%2C Best hit);ORF_evidence=A2YFA4 (UniProt);NIAS_FLcDNA=002-100-B06;TENOR=Os06t0631300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	25544480	25544480	.	+	.	Parent=Os06t0631300-01
Chr06	irgsp1_rep	CDS	25544481	25546112	.	+	0	Parent=Os06t0631300-01
Chr06	irgsp1_rep	three_prime_UTR	25546113	25546478	.	+	.	Parent=Os06t0631300-01
Chr06	irgsp1_rep	mRNA	25583151	25585088	.	+	.	ID=Os06t0631800-01;Name=Os06t0631800-01;Locus_id=Os06g0631800;Note=Conserved hypothetical protein.;Transcript_evidence=AK242103 (DDBJ%2C Best hit);ORF_evidence=NP_001174918.1 (RefSeq);NIAS_FLcDNA=J075144A22;TENOR=Os06t0631800-01;KEGG=Os06t0631800-01
Chr06	irgsp1_rep	five_prime_UTR	25583151	25583152	.	+	.	Parent=Os06t0631800-01
Chr06	irgsp1_rep	CDS	25583153	25583542	.	+	0	Parent=Os06t0631800-01
Chr06	irgsp1_rep	three_prime_UTR	25583543	25583554	.	+	.	Parent=Os06t0631800-01
Chr06	irgsp1_rep	three_prime_UTR	25583733	25584672	.	+	.	Parent=Os06t0631800-01
Chr06	irgsp1_rep	three_prime_UTR	25584771	25585088	.	+	.	Parent=Os06t0631800-01
Chr06	irgsp1_rep	mRNA	25590295	25594488	.	-	.	ID=Os06t0632200-01;Name=Os06t0632200-01;Locus_id=Os06g0632200;Oryzabase Gene Symbol Synonym(s)=TS;Oryzabase Gene Name Synonym(s)=tryptophan synthase;Note=Similar to tryptophan synthase-related.;Transcript_evidence=AK072921 (DDBJ%2C Best hit);ORF_evidence=NP_198669.1 (RefSeq);GO=Biological Process: tryptophan biosynthetic process (GO:0000162),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: tryptophan synthase activity (GO:0004834),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent enzyme%2C beta subunit (IPR001926),Tryptophan synthase%2C beta chain-like (IPR006316),Tryptophan synthase beta chain/beta chain-like (IPR023026);NIAS_FLcDNA=J023149F17;Oryzabase=16777;TENOR=Os06t0632200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	25594167	25594488	.	-	.	Parent=Os06t0632200-01
Chr06	irgsp1_rep	CDS	25594124	25594166	.	-	0	Parent=Os06t0632200-01
Chr06	irgsp1_rep	CDS	25592725	25593034	.	-	2	Parent=Os06t0632200-01
Chr06	irgsp1_rep	CDS	25591183	25591937	.	-	1	Parent=Os06t0632200-01
Chr06	irgsp1_rep	CDS	25590978	25591076	.	-	2	Parent=Os06t0632200-01
Chr06	irgsp1_rep	CDS	25590477	25590727	.	-	2	Parent=Os06t0632200-01
Chr06	irgsp1_rep	three_prime_UTR	25590295	25590476	.	-	.	Parent=Os06t0632200-01
Chr06	irgsp1_rep	mRNA	25590293	25594365	.	-	.	ID=Os06t0632200-02;Name=Os06t0632200-02;Locus_id=Os06g0632200;Oryzabase Gene Symbol Synonym(s)=TS;Oryzabase Gene Name Synonym(s)=tryptophan synthase;Note=Similar to tryptophan synthase-related.;Transcript_evidence=AK058470 (DDBJ%2C Best hit);ORF_evidence=NP_198669.1 (RefSeq);GO=Biological Process: tryptophan biosynthetic process (GO:0000162),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: tryptophan synthase activity (GO:0004834),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent enzyme%2C beta subunit (IPR001926),Tryptophan synthase%2C beta chain-like (IPR006316),Tryptophan synthase beta chain/beta chain-like (IPR023026);NIAS_FLcDNA=001-016-B09;Oryzabase=16777;TENOR=Os06t0632200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	25594167	25594365	.	-	.	Parent=Os06t0632200-02
Chr06	irgsp1_rep	CDS	25594124	25594166	.	-	0	Parent=Os06t0632200-02
Chr06	irgsp1_rep	CDS	25592725	25593040	.	-	2	Parent=Os06t0632200-02
Chr06	irgsp1_rep	CDS	25591183	25591937	.	-	1	Parent=Os06t0632200-02
Chr06	irgsp1_rep	CDS	25590978	25591076	.	-	2	Parent=Os06t0632200-02
Chr06	irgsp1_rep	CDS	25590477	25590727	.	-	2	Parent=Os06t0632200-02
Chr06	irgsp1_rep	three_prime_UTR	25590293	25590476	.	-	.	Parent=Os06t0632200-02
Chr06	irgsp1_rep	mRNA	25617282	25622361	.	+	.	ID=Os06t0632300-00;Name=Os06t0632300-00;Locus_id=Os06g0632300;Note=Similar to Transposon protein.;Transcript_evidence=EU975426 (DDBJ);ORF_evidence=B6UDW1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);TENOR=Os06t0632300-00;KEGG=Os06t0632300-00
Chr06	irgsp1_rep	five_prime_UTR	25617282	25617367	.	+	.	Parent=Os06t0632300-00
Chr06	irgsp1_rep	CDS	25617368	25617725	.	+	0	Parent=Os06t0632300-00
Chr06	irgsp1_rep	CDS	25618172	25618528	.	+	2	Parent=Os06t0632300-00
Chr06	irgsp1_rep	CDS	25621654	25622315	.	+	2	Parent=Os06t0632300-00
Chr06	irgsp1_rep	three_prime_UTR	25622316	25622361	.	+	.	Parent=Os06t0632300-00
Chr06	irgsp1_rep	mRNA	25628956	25629312	.	+	.	ID=Os06t0632400-00;Name=Os06t0632400-00;Locus_id=Os06g0632400;Note=Similar to OSIGBa0115M15.3 protein.;Transcript_evidence=EU976099 (DDBJ);ORF_evidence=D0VLU6 (UniProt);TENOR=Os06t0632400-00;KEGG=Os06t0632400-00
Chr06	irgsp1_rep	CDS	25628956	25629186	.	+	0	Parent=Os06t0632400-00
Chr06	irgsp1_rep	three_prime_UTR	25629187	25629312	.	+	.	Parent=Os06t0632400-00
Chr06	irgsp1_rep	mRNA	25633143	25636382	.	-	.	ID=Os06t0632500-00;Name=Os06t0632500-00;Locus_id=Os06g0632500;Note=Putative B3 domain-containing protein Os06g0632500.;Transcript_evidence=Q67VL7 (UniProt);ORF_evidence=Q67VL7 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);TENOR=Os06t0632500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	25636302	25636382	.	-	0	Parent=Os06t0632500-00
Chr06	irgsp1_rep	CDS	25635883	25636204	.	-	0	Parent=Os06t0632500-00
Chr06	irgsp1_rep	CDS	25635633	25635697	.	-	2	Parent=Os06t0632500-00
Chr06	irgsp1_rep	CDS	25634652	25634976	.	-	0	Parent=Os06t0632500-00
Chr06	irgsp1_rep	CDS	25634373	25634572	.	-	2	Parent=Os06t0632500-00
Chr06	irgsp1_rep	CDS	25633535	25633702	.	-	0	Parent=Os06t0632500-00
Chr06	irgsp1_rep	CDS	25633143	25633163	.	-	0	Parent=Os06t0632500-00
Chr06	irgsp1_rep	mRNA	25641466	25645226	.	-	.	ID=Os06t0632700-01;Name=Os06t0632700-01;Locus_id=Os06g0632700;Note=MULE transposase%2C conserved domain domain containing protein.;Transcript_evidence=AK101148 (DDBJ%2C Best hit);ORF_evidence=D0VLU5 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Phox/Bem1p (IPR000270),Zinc finger%2C CCHC-type (IPR001878),Transposase%2C MuDR%2C plant (IPR004332),Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);NIAS_FLcDNA=J033026P12;Expression=AK101148;TENOR=Os06t0632700-01;KEGG=Os06t0632700-01
Chr06	irgsp1_rep	five_prime_UTR	25644956	25645226	.	-	.	Parent=Os06t0632700-01
Chr06	irgsp1_rep	five_prime_UTR	25644098	25644110	.	-	.	Parent=Os06t0632700-01
Chr06	irgsp1_rep	CDS	25643775	25644097	.	-	0	Parent=Os06t0632700-01
Chr06	irgsp1_rep	CDS	25641859	25643704	.	-	1	Parent=Os06t0632700-01
Chr06	irgsp1_rep	three_prime_UTR	25641466	25641858	.	-	.	Parent=Os06t0632700-01
Chr06	irgsp1_rep	mRNA	25641527	25643267	.	-	.	ID=Os06t0632700-02;Name=Os06t0632700-02;Locus_id=Os06g0632700;Note=Hypothetical conserved gene.;Transcript_evidence=AK060787 (DDBJ%2C Best hit);ORF_evidence=D0VLU5 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);NIAS_FLcDNA=001-033-D07;TENOR=Os06t0632700-02;KEGG=Os06t0632700-02
Chr06	irgsp1_rep	five_prime_UTR	25643266	25643267	.	-	.	Parent=Os06t0632700-02
Chr06	irgsp1_rep	CDS	25641859	25643265	.	-	0	Parent=Os06t0632700-02
Chr06	irgsp1_rep	three_prime_UTR	25641527	25641858	.	-	.	Parent=Os06t0632700-02
Chr06	irgsp1_rep	mRNA	25641641	25644111	.	+	.	ID=Os06t0632800-00;Name=Os06t0632800-00;Locus_id=Os06g0632800;Note=Hypothetical protein.;Transcript_evidence=tplb0035l23 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0632800-00
Chr06	irgsp1_rep	five_prime_UTR	25641641	25641756	.	+	.	Parent=Os06t0632800-00
Chr06	irgsp1_rep	CDS	25641757	25642041	.	+	0	Parent=Os06t0632800-00
Chr06	irgsp1_rep	three_prime_UTR	25642042	25643703	.	+	.	Parent=Os06t0632800-00
Chr06	irgsp1_rep	three_prime_UTR	25643774	25644111	.	+	.	Parent=Os06t0632800-00
Chr06	irgsp1_rep	mRNA	25655524	25656224	.	+	.	ID=Os06t0633100-01;Name=Os06t0633100-01;Locus_id=Os06g0633100;Note=Similar to P10Sh249C12.;Transcript_evidence=AK107791 (DDBJ%2C Best hit);ORF_evidence=D0VLU4 (UniProt);NIAS_FLcDNA=002-133-D05;Expression=AK107791;TENOR=Os06t0633100-01;KEGG=Os06t0633100-01
Chr06	irgsp1_rep	five_prime_UTR	25655524	25655575	.	+	.	Parent=Os06t0633100-01
Chr06	irgsp1_rep	CDS	25655576	25655962	.	+	0	Parent=Os06t0633100-01
Chr06	irgsp1_rep	three_prime_UTR	25655963	25656224	.	+	.	Parent=Os06t0633100-01
Chr06	irgsp1_rep	mRNA	25670034	25671891	.	-	.	ID=Os06t0633300-01;Name=Os06t0633300-01;Locus_id=Os06g0633300;CGSNL Gene Symbol=PSK;CGSNL Gene Name=PHYTOSULFOKINE-ALPHA PRECURSOR;Oryzabase Gene Symbol Synonym(s)=OsPSK%2C PSK-alpha%2C PSK-beta;Oryzabase Gene Name Synonym(s)=phytosulfokine%2C phytosulfokine-alpha%2C preprophytosulfokine%2C phytosulfokine precursor%2C Cell growth factor (Phytosulfokine)%2C Phytosulfokines 1%2C Phytosulfokine-alpha%2C Phytosulfokine-a%2C Phytosulfokine-beta%2C Phytosulfokine-b;Note=Similar to Phytosulfokines 1.;Transcript_evidence=AK063309 (DDBJ%2C Best hit);ORF_evidence=Q0DAS9 (UniProt);NIAS_FLcDNA=001-113-G01;Oryzabase=2988;Expression=AK063309;TENOR=Os06t0633300-01;KEGG=Os06t0633300-01
Chr06	irgsp1_rep	five_prime_UTR	25671804	25671891	.	-	.	Parent=Os06t0633300-01
Chr06	irgsp1_rep	five_prime_UTR	25671739	25671794	.	-	.	Parent=Os06t0633300-01
Chr06	irgsp1_rep	CDS	25671496	25671738	.	-	0	Parent=Os06t0633300-01
Chr06	irgsp1_rep	three_prime_UTR	25670034	25671495	.	-	.	Parent=Os06t0633300-01
Chr06	irgsp1_rep	mRNA	25676661	25677539	.	-	.	ID=Os06t0633375-00;Name=Os06t0633375-00;Locus_id=Os06g0633375;Note=Hypothetical protein.;Transcript_evidence=FP099929 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0633375-00
Chr06	irgsp1_rep	five_prime_UTR	25677519	25677539	.	-	.	Parent=Os06t0633375-00
Chr06	irgsp1_rep	CDS	25676943	25677518	.	-	0	Parent=Os06t0633375-00
Chr06	irgsp1_rep	three_prime_UTR	25676661	25676942	.	-	.	Parent=Os06t0633375-00
Chr06	irgsp1_rep	mRNA	25677563	25678342	.	-	.	ID=Os06t0633450-00;Name=Os06t0633450-00;Locus_id=Os06g0633450;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q67VL1 (UniProt);TENOR=Os06t0633450-00
Chr06	irgsp1_rep	CDS	25678112	25678342	.	-	0	Parent=Os06t0633450-00
Chr06	irgsp1_rep	CDS	25677761	25677946	.	-	0	Parent=Os06t0633450-00
Chr06	irgsp1_rep	CDS	25677563	25677571	.	-	0	Parent=Os06t0633450-00
Chr06	irgsp1_rep	mRNA	25680953	25682275	.	-	.	ID=Os06t0633500-01;Name=Os06t0633500-01;Locus_id=Os06g0633500;RAP-DB Gene Symbol Synonym(s)=OsCLR1;RAP-DB Gene Name Synonym(s)=cytoplasmic-localized RING finger protein 1;CGSNL Gene Symbol=CLR1;CGSNL Gene Name=CYTOPLASMIC-LOCALIZED RING FINGER PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsCLR1;Oryzabase Gene Name Synonym(s)=cytoplasmic-localized RING finger protein 1%2C cytosol-localized RING finger protein 1;Note=Cytoplasmic-localized RING finger protein%2C Positive regulation in response to salt and drought stress;Transcript_evidence=AK108505 (truncated),Inferred from literature;ORF_evidence=Inferred from literature;InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841);NIAS_FLcDNA=002-143-H09 (truncated);Manual Curation=July 17%2C 2019;Literature_PMID=31292649;Oryzabase=23132;Expression=AK108505;TENOR=Os06t0633500-01;KEGG=Os06t0633500-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=nucleus (GO:0005634), cytosol (GO:0005829)
Chr06	irgsp1_rep	five_prime_UTR	25682200	25682275	.	-	.	Parent=Os06t0633500-01
Chr06	irgsp1_rep	CDS	25681183	25682199	.	-	0	Parent=Os06t0633500-01
Chr06	irgsp1_rep	three_prime_UTR	25680953	25681182	.	-	.	Parent=Os06t0633500-01
Chr06	irgsp1_rep	mRNA	25690379	25693742	.	+	.	ID=Os06t0633800-01;Name=Os06t0633800-01;Locus_id=Os06g0633800;Oryzabase Gene Symbol Synonym(s)=OsATL5;Oryzabase Gene Name Synonym(s)=amino acid transporter-like 5;Note=Amino acid transporter%2C transmembrane domain containing protein.;Transcript_evidence=AK101315 (DDBJ%2C Best hit);ORF_evidence=B6TE03 (UniProt);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=J033034C14;Oryzabase=18522;Expression=AK101315;TENOR=Os06t0633800-01;KEGG=Os06t0633800-01
Chr06	irgsp1_rep	five_prime_UTR	25690379	25690595	.	+	.	Parent=Os06t0633800-01
Chr06	irgsp1_rep	five_prime_UTR	25691265	25691280	.	+	.	Parent=Os06t0633800-01
Chr06	irgsp1_rep	CDS	25691281	25691701	.	+	0	Parent=Os06t0633800-01
Chr06	irgsp1_rep	CDS	25692159	25692311	.	+	2	Parent=Os06t0633800-01
Chr06	irgsp1_rep	CDS	25692422	25692625	.	+	2	Parent=Os06t0633800-01
Chr06	irgsp1_rep	CDS	25692708	25693173	.	+	2	Parent=Os06t0633800-01
Chr06	irgsp1_rep	CDS	25693266	25693398	.	+	1	Parent=Os06t0633800-01
Chr06	irgsp1_rep	three_prime_UTR	25693399	25693742	.	+	.	Parent=Os06t0633800-01
Chr06	irgsp1_rep	mRNA	25690500	25693792	.	+	.	ID=Os06t0633800-02;Name=Os06t0633800-02;Locus_id=Os06g0633800;Oryzabase Gene Symbol Synonym(s)=OsATL5;Oryzabase Gene Name Synonym(s)=amino acid transporter-like 5;Note=Amino acid transporter%2C transmembrane domain containing protein.;Transcript_evidence=AK073428 (DDBJ%2C Best hit);ORF_evidence=B6TE03 (UniProt);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=J033042H02;Oryzabase=18522;Expression=AK073428;TENOR=Os06t0633800-02;KEGG=Os06t0633800-02
Chr06	irgsp1_rep	five_prime_UTR	25690500	25690595	.	+	.	Parent=Os06t0633800-02
Chr06	irgsp1_rep	five_prime_UTR	25691265	25691280	.	+	.	Parent=Os06t0633800-02
Chr06	irgsp1_rep	CDS	25691281	25691701	.	+	0	Parent=Os06t0633800-02
Chr06	irgsp1_rep	CDS	25692159	25692311	.	+	2	Parent=Os06t0633800-02
Chr06	irgsp1_rep	CDS	25692422	25692625	.	+	2	Parent=Os06t0633800-02
Chr06	irgsp1_rep	CDS	25692708	25693173	.	+	2	Parent=Os06t0633800-02
Chr06	irgsp1_rep	CDS	25693266	25693398	.	+	1	Parent=Os06t0633800-02
Chr06	irgsp1_rep	three_prime_UTR	25693399	25693792	.	+	.	Parent=Os06t0633800-02
Chr06	irgsp1_rep	mRNA	25698560	25702597	.	+	.	ID=Os06t0633900-01;Name=Os06t0633900-01;Locus_id=Os06g0633900;Oryzabase Gene Symbol Synonym(s)=OsPOP14%2C POP14;Oryzabase Gene Name Synonym(s)=Prolyl Oligopeptidase 14%2C PROLYL OLIGOPEPTIDASE 14;Note=Similar to esterase/lipase/thioesterase.;Transcript_evidence=AK287682 (DDBJ%2C Best hit);ORF_evidence=NP_001151903.1 (RefSeq);NIAS_FLcDNA=J065124A03;Oryzabase=20022;TENOR=Os06t0633900-01;KEGG=Os06t0633900-01
Chr06	irgsp1_rep	five_prime_UTR	25698560	25698612	.	+	.	Parent=Os06t0633900-01
Chr06	irgsp1_rep	CDS	25698613	25699069	.	+	0	Parent=Os06t0633900-01
Chr06	irgsp1_rep	CDS	25700926	25700982	.	+	2	Parent=Os06t0633900-01
Chr06	irgsp1_rep	CDS	25701089	25701090	.	+	2	Parent=Os06t0633900-01
Chr06	irgsp1_rep	three_prime_UTR	25701091	25701327	.	+	.	Parent=Os06t0633900-01
Chr06	irgsp1_rep	three_prime_UTR	25701397	25701444	.	+	.	Parent=Os06t0633900-01
Chr06	irgsp1_rep	three_prime_UTR	25701796	25702229	.	+	.	Parent=Os06t0633900-01
Chr06	irgsp1_rep	three_prime_UTR	25702327	25702597	.	+	.	Parent=Os06t0633900-01
Chr06	irgsp1_rep	mRNA	25708677	25710709	.	+	.	ID=Os06t0634000-01;Name=Os06t0634000-01;Locus_id=Os06g0634000;Note=Conserved hypothetical protein.;Transcript_evidence=AK099374 (DDBJ%2C Best hit),AK073652 (DDBJ%2C Best hit);ORF_evidence=B8B0G4 (UniProt);NIAS_FLcDNA=J033055E23,J033050K04;Expression=AK099374;TENOR=Os06t0634000-01;KEGG=Os06t0634000-01
Chr06	irgsp1_rep	five_prime_UTR	25708677	25708694	.	+	.	Parent=Os06t0634000-01
Chr06	irgsp1_rep	CDS	25708695	25708821	.	+	0	Parent=Os06t0634000-01
Chr06	irgsp1_rep	CDS	25708919	25708965	.	+	2	Parent=Os06t0634000-01
Chr06	irgsp1_rep	CDS	25709072	25709201	.	+	0	Parent=Os06t0634000-01
Chr06	irgsp1_rep	CDS	25709757	25709806	.	+	2	Parent=Os06t0634000-01
Chr06	irgsp1_rep	CDS	25710277	25710585	.	+	0	Parent=Os06t0634000-01
Chr06	irgsp1_rep	three_prime_UTR	25710586	25710709	.	+	.	Parent=Os06t0634000-01
Chr06	irgsp1_rep	mRNA	25711868	25714678	.	-	.	ID=Os06t0634100-01;Name=Os06t0634100-01;Locus_id=Os06g0634100;Note=RNA-directed DNA polymerase (reverse transcriptase) domain containing protein.;Transcript_evidence=AK073917 (DDBJ%2C Best hit);ORF_evidence=XP_002438709.1 (RefSeq);GO=Biological Process: RNA-dependent DNA replication (GO:0006278),Biological Process: mRNA processing (GO:0006397),Cellular Component: chloroplast (GO:0009507),Molecular Function: RNA binding (GO:0003723),Molecular Function: RNA-directed DNA polymerase activity (GO:0003964);InterPro=Reverse transcriptase (IPR000477),Maturase%2C MatK (IPR002866);NIAS_FLcDNA=J033074L10;Expression=AK073917;TENOR=Os06t0634100-01;KEGG=Os06t0634100-01
Chr06	irgsp1_rep	five_prime_UTR	25714447	25714678	.	-	.	Parent=Os06t0634100-01
Chr06	irgsp1_rep	CDS	25714368	25714446	.	-	0	Parent=Os06t0634100-01
Chr06	irgsp1_rep	CDS	25711876	25714265	.	-	2	Parent=Os06t0634100-01
Chr06	irgsp1_rep	three_prime_UTR	25711868	25711875	.	-	.	Parent=Os06t0634100-01
Chr06	irgsp1_rep	mRNA	25718165	25722139	.	-	.	ID=Os06t0634300-01;Name=Os06t0634300-01;Locus_id=Os06g0634300;Note=Similar to cDNA clone:J023074C15%2C full insert sequence.;Transcript_evidence=AK072100 (DDBJ%2C Best hit);ORF_evidence=B7EII4 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=NUDIX hydrolase domain (IPR000086),Nudix hydrolase 6-like (IPR003293),NUDIX hydrolase domain-like (IPR015797),NUDIX hydrolase%2C conserved site (IPR020084),NUDIX hydrolase (IPR020476);NIAS_FLcDNA=J013116J21;TENOR=Os06t0634300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	25722139	25722139	.	-	.	Parent=Os06t0634300-01
Chr06	irgsp1_rep	CDS	25721961	25722138	.	-	0	Parent=Os06t0634300-01
Chr06	irgsp1_rep	CDS	25721039	25721259	.	-	2	Parent=Os06t0634300-01
Chr06	irgsp1_rep	CDS	25720316	25720381	.	-	0	Parent=Os06t0634300-01
Chr06	irgsp1_rep	CDS	25719866	25720003	.	-	0	Parent=Os06t0634300-01
Chr06	irgsp1_rep	CDS	25719593	25719670	.	-	0	Parent=Os06t0634300-01
Chr06	irgsp1_rep	CDS	25719445	25719495	.	-	0	Parent=Os06t0634300-01
Chr06	irgsp1_rep	CDS	25719319	25719353	.	-	0	Parent=Os06t0634300-01
Chr06	irgsp1_rep	CDS	25718728	25718836	.	-	1	Parent=Os06t0634300-01
Chr06	irgsp1_rep	CDS	25718353	25718601	.	-	0	Parent=Os06t0634300-01
Chr06	irgsp1_rep	three_prime_UTR	25718165	25718352	.	-	.	Parent=Os06t0634300-01
Chr06	irgsp1_rep	mRNA	25718152	25721418	.	-	.	ID=Os06t0634300-02;Name=Os06t0634300-02;Locus_id=Os06g0634300;Note=Similar to Nudix hydrolase 2 (EC 3.6.1.-) (AtNUDT2) (ADP-ribose pyrophosphatase) (EC 3.6.1.13) (NADH pyrophosphatase) (EC 3.6.1.22).;Transcript_evidence=AK070867 (DDBJ%2C Best hit);ORF_evidence=B6U183 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=NUDIX hydrolase domain (IPR000086),Nudix hydrolase 6-like (IPR003293),NUDIX hydrolase domain-like (IPR015797),NUDIX hydrolase%2C conserved site (IPR020084),NUDIX hydrolase (IPR020476);NIAS_FLcDNA=J023074C15;Expression=AK070867;TENOR=Os06t0634300-02;KEGG=Os06t0634300-02 (EC:3.6.1.13)
Chr06	irgsp1_rep	five_prime_UTR	25721306	25721418	.	-	.	Parent=Os06t0634300-02
Chr06	irgsp1_rep	CDS	25721039	25721305	.	-	0	Parent=Os06t0634300-02
Chr06	irgsp1_rep	CDS	25720316	25720381	.	-	0	Parent=Os06t0634300-02
Chr06	irgsp1_rep	CDS	25719866	25720003	.	-	0	Parent=Os06t0634300-02
Chr06	irgsp1_rep	CDS	25719593	25719670	.	-	0	Parent=Os06t0634300-02
Chr06	irgsp1_rep	CDS	25719445	25719495	.	-	0	Parent=Os06t0634300-02
Chr06	irgsp1_rep	CDS	25719319	25719353	.	-	0	Parent=Os06t0634300-02
Chr06	irgsp1_rep	CDS	25718728	25718836	.	-	1	Parent=Os06t0634300-02
Chr06	irgsp1_rep	CDS	25718353	25718601	.	-	0	Parent=Os06t0634300-02
Chr06	irgsp1_rep	three_prime_UTR	25718152	25718352	.	-	.	Parent=Os06t0634300-02
Chr06	irgsp1_rep	mRNA	25727513	25733219	.	-	.	ID=Os06t0634500-01;Name=Os06t0634500-01;Locus_id=Os06g0634500;Note=Similar to kinase.;Transcript_evidence=AK111551 (DDBJ%2C Best hit);ORF_evidence=XP_002869840.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J013050P20;TENOR=Os06t0634500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	25732889	25733219	.	-	.	Parent=Os06t0634500-01
Chr06	irgsp1_rep	CDS	25732810	25732888	.	-	0	Parent=Os06t0634500-01
Chr06	irgsp1_rep	CDS	25732570	25732702	.	-	2	Parent=Os06t0634500-01
Chr06	irgsp1_rep	CDS	25731720	25731791	.	-	1	Parent=Os06t0634500-01
Chr06	irgsp1_rep	CDS	25731576	25731641	.	-	1	Parent=Os06t0634500-01
Chr06	irgsp1_rep	CDS	25731428	25731499	.	-	1	Parent=Os06t0634500-01
Chr06	irgsp1_rep	CDS	25731261	25731304	.	-	1	Parent=Os06t0634500-01
Chr06	irgsp1_rep	CDS	25731161	25731162	.	-	2	Parent=Os06t0634500-01
Chr06	irgsp1_rep	three_prime_UTR	25731091	25731160	.	-	.	Parent=Os06t0634500-01
Chr06	irgsp1_rep	three_prime_UTR	25730939	25731004	.	-	.	Parent=Os06t0634500-01
Chr06	irgsp1_rep	three_prime_UTR	25730780	25730845	.	-	.	Parent=Os06t0634500-01
Chr06	irgsp1_rep	three_prime_UTR	25730368	25730687	.	-	.	Parent=Os06t0634500-01
Chr06	irgsp1_rep	three_prime_UTR	25729461	25729720	.	-	.	Parent=Os06t0634500-01
Chr06	irgsp1_rep	three_prime_UTR	25729044	25729315	.	-	.	Parent=Os06t0634500-01
Chr06	irgsp1_rep	three_prime_UTR	25728812	25728947	.	-	.	Parent=Os06t0634500-01
Chr06	irgsp1_rep	three_prime_UTR	25728569	25728708	.	-	.	Parent=Os06t0634500-01
Chr06	irgsp1_rep	three_prime_UTR	25728304	25728460	.	-	.	Parent=Os06t0634500-01
Chr06	irgsp1_rep	three_prime_UTR	25727513	25728068	.	-	.	Parent=Os06t0634500-01
Chr06	irgsp1_rep	mRNA	25737420	25741547	.	-	.	ID=Os06t0634600-01;Name=Os06t0634600-01;Locus_id=Os06g0634600;Note=SEP domain containing protein.;Transcript_evidence=AK122074 (DDBJ%2C Best hit);ORF_evidence=NP_567262.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=UBX (IPR001012),UBA-like (IPR009060),SEP domain (IPR012989);NIAS_FLcDNA=J033118C24;Expression=AK122074;TENOR=Os06t0634600-01;KEGG=Os06t0634600-01
Chr06	irgsp1_rep	five_prime_UTR	25741452	25741547	.	-	.	Parent=Os06t0634600-01
Chr06	irgsp1_rep	CDS	25740865	25741451	.	-	0	Parent=Os06t0634600-01
Chr06	irgsp1_rep	CDS	25739004	25739286	.	-	1	Parent=Os06t0634600-01
Chr06	irgsp1_rep	CDS	25738132	25738227	.	-	0	Parent=Os06t0634600-01
Chr06	irgsp1_rep	CDS	25737654	25738043	.	-	0	Parent=Os06t0634600-01
Chr06	irgsp1_rep	three_prime_UTR	25737420	25737653	.	-	.	Parent=Os06t0634600-01
Chr06	irgsp1_rep	mRNA	25741860	25743139	.	-	.	ID=Os06t0634700-01;Name=Os06t0634700-01;Locus_id=Os06g0634700;Note=Conserved hypothetical protein.;Transcript_evidence=AK069527 (DDBJ%2C Best hit);ORF_evidence=Q109A2 (UniProt);NIAS_FLcDNA=J023021N13;TENOR=Os06t0634700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	25743036	25743139	.	-	.	Parent=Os06t0634700-01
Chr06	irgsp1_rep	CDS	25742685	25743035	.	-	0	Parent=Os06t0634700-01
Chr06	irgsp1_rep	three_prime_UTR	25741860	25742684	.	-	.	Parent=Os06t0634700-01
Chr06	irgsp1_rep	mRNA	25740888	25742375	.	+	.	ID=Os06t0634800-00;Name=Os06t0634800-00;Locus_id=Os06g0634800;Note=Similar to Sucrose-phosphate synthase.;Transcript_evidence=BT085504 (DDBJ);ORF_evidence=Q6EZE8 (UniProt);TENOR=Os06t0634800-00;KEGG=Os06t0634800-00
Chr06	irgsp1_rep	CDS	25740888	25741472	.	+	0	Parent=Os06t0634800-00
Chr06	irgsp1_rep	CDS	25741998	25742122	.	+	0	Parent=Os06t0634800-00
Chr06	irgsp1_rep	CDS	25742180	25742375	.	+	1	Parent=Os06t0634800-00
Chr06	irgsp1_rep	mRNA	25747250	25749944	.	-	.	ID=Os06t0635200-01;Name=Os06t0635200-01;Locus_id=Os06g0635200;Note=Protein of unknown function DUF3537 domain containing protein.;Transcript_evidence=AK068319 (DDBJ%2C Best hit);ORF_evidence=B8B0G7 (UniProt);InterPro=Protein of unknown function DUF3537 (IPR021924);NIAS_FLcDNA=J013149E13;Expression=AK068319;TENOR=Os06t0635200-01;KEGG=Os06t0635200-01
Chr06	irgsp1_rep	five_prime_UTR	25749802	25749944	.	-	.	Parent=Os06t0635200-01
Chr06	irgsp1_rep	CDS	25748884	25749801	.	-	0	Parent=Os06t0635200-01
Chr06	irgsp1_rep	CDS	25748238	25748541	.	-	0	Parent=Os06t0635200-01
Chr06	irgsp1_rep	CDS	25747522	25747658	.	-	2	Parent=Os06t0635200-01
Chr06	irgsp1_rep	three_prime_UTR	25747250	25747521	.	-	.	Parent=Os06t0635200-01
Chr06	irgsp1_rep	mRNA	25747517	25749785	.	+	.	ID=Os06t0635250-00;Name=Os06t0635250-00;Locus_id=Os06g0635250;Note=Hypothetical protein.;Transcript_evidence=tplb0026b15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0635250-00
Chr06	irgsp1_rep	five_prime_UTR	25747517	25747700	.	+	.	Parent=Os06t0635250-00
Chr06	irgsp1_rep	CDS	25748264	25748541	.	+	0	Parent=Os06t0635250-00
Chr06	irgsp1_rep	CDS	25748884	25749130	.	+	1	Parent=Os06t0635250-00
Chr06	irgsp1_rep	three_prime_UTR	25749131	25749785	.	+	.	Parent=Os06t0635250-00
Chr06	irgsp1_rep	mRNA	25755113	25757948	.	-	.	ID=Os06t0635300-00;Name=Os06t0635300-00;Locus_id=Os06g0635300;Note=Similar to gastric triacylglycerol lipase.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001149002.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629);InterPro=Alpha/beta hydrolase fold-1 (IPR000073),Partial AB-hydrolase lipase domain (IPR006693);TENOR=Os06t0635300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	25757812	25757948	.	-	0	Parent=Os06t0635300-00
Chr06	irgsp1_rep	CDS	25757088	25757214	.	-	1	Parent=Os06t0635300-00
Chr06	irgsp1_rep	CDS	25756890	25757006	.	-	0	Parent=Os06t0635300-00
Chr06	irgsp1_rep	CDS	25756674	25756814	.	-	0	Parent=Os06t0635300-00
Chr06	irgsp1_rep	CDS	25756488	25756598	.	-	0	Parent=Os06t0635300-00
Chr06	irgsp1_rep	CDS	25756249	25756392	.	-	0	Parent=Os06t0635300-00
Chr06	irgsp1_rep	CDS	25755113	25755502	.	-	0	Parent=Os06t0635300-00
Chr06	irgsp1_rep	mRNA	25767782	25768893	.	-	.	ID=Os06t0635500-00;Name=Os06t0635500-00;Locus_id=Os06g0635500;Note=Hypothetical conserved gene.;Transcript_evidence=BT035451 (DDBJ);ORF_evidence=NP_001058142.2 (RefSeq);TENOR=Os06t0635500-00;KEGG=Os06t0635500-00
Chr06	irgsp1_rep	CDS	25768462	25768893	.	-	0	Parent=Os06t0635500-00
Chr06	irgsp1_rep	CDS	25767850	25768383	.	-	0	Parent=Os06t0635500-00
Chr06	irgsp1_rep	three_prime_UTR	25767782	25767849	.	-	.	Parent=Os06t0635500-00
Chr06	irgsp1_rep	mRNA	25785598	25787648	.	+	.	ID=Os06t0635700-01;Name=Os06t0635700-01;Locus_id=Os06g0635700;CGSNL Gene Symbol=ERF114;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 114;Oryzabase Gene Symbol Synonym(s)=OsERF#114%2C OsERF114;Oryzabase Gene Name Synonym(s)=ethylene response factor 114;Note=Conserved hypothetical protein.;Transcript_evidence=AK107643 (DDBJ%2C Best hit);ORF_evidence=A3BDV0 (UniProt);NIAS_FLcDNA=002-131-F04;Oryzabase=10610;TENOR=Os06t0635700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	25785598	25785598	.	+	.	Parent=Os06t0635700-01
Chr06	irgsp1_rep	CDS	25785599	25787464	.	+	0	Parent=Os06t0635700-01
Chr06	irgsp1_rep	three_prime_UTR	25787465	25787648	.	+	.	Parent=Os06t0635700-01
Chr06	irgsp1_rep	mRNA	25832821	25836854	.	+	.	ID=Os06t0636100-00;Name=Os06t0636100-00;Locus_id=Os06g0636100;Note=Hypothetical conserved gene.;Transcript_evidence=CT836245 (DDBJ%2C Best hit);ORF_evidence=Q67V17 (UniProt);InterPro=Pathogenic type III effector avirulence factor Avr cleavage site (IPR008700);TENOR=Os06t0636100-00;KEGG=Os06t0636100-00
Chr06	irgsp1_rep	five_prime_UTR	25832821	25832986	.	+	.	Parent=Os06t0636100-00
Chr06	irgsp1_rep	CDS	25832987	25832992	.	+	0	Parent=Os06t0636100-00
Chr06	irgsp1_rep	CDS	25834905	25835690	.	+	0	Parent=Os06t0636100-00
Chr06	irgsp1_rep	CDS	25836608	25836643	.	+	0	Parent=Os06t0636100-00
Chr06	irgsp1_rep	three_prime_UTR	25836644	25836854	.	+	.	Parent=Os06t0636100-00
Chr06	irgsp1_rep	mRNA	25834810	25835656	.	-	.	ID=Os06t0636201-00;Name=Os06t0636201-00;Locus_id=Os06g0636201;Note=Conserved hypothetical protein.;Transcript_evidence=EU968448 (DDBJ);ORF_evidence=NP_001144438.1 (RefSeq);TENOR=Os06t0636201-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	25835473	25835656	.	-	0	Parent=Os06t0636201-00
Chr06	irgsp1_rep	CDS	25834810	25835411	.	-	2	Parent=Os06t0636201-00
Chr06	irgsp1_rep	mRNA	25867747	25870244	.	+	.	ID=Os06t0636600-01;Name=Os06t0636600-01;Locus_id=Os06g0636600;Oryzabase Gene Symbol Synonym(s)=HT1;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK119586 (DDBJ%2C Best hit);ORF_evidence=NP_001147925.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=002-117-C10;Oryzabase=20403;Expression=AK119586;TENOR=Os06t0636600-01;KEGG=Os06t0636600-01
Chr06	irgsp1_rep	five_prime_UTR	25867747	25868312	.	+	.	Parent=Os06t0636600-01
Chr06	irgsp1_rep	CDS	25868313	25868801	.	+	0	Parent=Os06t0636600-01
Chr06	irgsp1_rep	CDS	25868955	25869410	.	+	0	Parent=Os06t0636600-01
Chr06	irgsp1_rep	CDS	25869807	25870058	.	+	0	Parent=Os06t0636600-01
Chr06	irgsp1_rep	three_prime_UTR	25870059	25870244	.	+	.	Parent=Os06t0636600-01
Chr06	irgsp1_rep	mRNA	25870258	25876328	.	-	.	ID=Os06t0636700-01;Name=Os06t0636700-01;Locus_id=Os06g0636700;CGSNL Gene Symbol=GELP87;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 87;Oryzabase Gene Symbol Synonym(s)=OsGELP87;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 87;Note=Esterase%2C SGNH hydrolase-type domain containing protein.;Transcript_evidence=AK058562 (DDBJ%2C Best hit);ORF_evidence=NP_849451.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087),Esterase%2C SGNH hydrolase-type (IPR013830),Esterase%2C SGNH hydrolase-type%2C subgroup (IPR013831);NIAS_FLcDNA=001-017-D11;Oryzabase=11037;Expression=AK058562;TENOR=Os06t0636700-01;KEGG=Os06t0636700-01
Chr06	irgsp1_rep	five_prime_UTR	25876285	25876328	.	-	.	Parent=Os06t0636700-01
Chr06	irgsp1_rep	CDS	25875823	25876284	.	-	0	Parent=Os06t0636700-01
Chr06	irgsp1_rep	CDS	25871067	25871556	.	-	0	Parent=Os06t0636700-01
Chr06	irgsp1_rep	CDS	25870453	25870649	.	-	2	Parent=Os06t0636700-01
Chr06	irgsp1_rep	three_prime_UTR	25870258	25870452	.	-	.	Parent=Os06t0636700-01
Chr06	irgsp1_rep	mRNA	25880281	25880808	.	+	.	ID=Os06t0636800-00;Name=Os06t0636800-00;Locus_id=Os06g0636800;Note=Conserved hypothetical protein.;Transcript_evidence=EU970200 (DDBJ);ORF_evidence=NP_001058146.1 (RefSeq);TENOR=Os06t0636800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	25880281	25880613	.	+	0	Parent=Os06t0636800-00
Chr06	irgsp1_rep	three_prime_UTR	25880614	25880808	.	+	.	Parent=Os06t0636800-00
Chr06	irgsp1_rep	mRNA	25895947	25897896	.	+	.	ID=Os06t0637400-01;Name=Os06t0637400-01;Locus_id=Os06g0637400;Oryzabase Gene Symbol Synonym(s)=OsCEP15%2C CEP15;Oryzabase Gene Name Synonym(s)=C-TERMINALLY ENCODED PEPTIDE 15;Note=Conserved hypothetical protein.;Transcript_evidence=AK066059 (DDBJ%2C Best hit);ORF_evidence=A2YFE2 (UniProt);NIAS_FLcDNA=J013053C20;Oryzabase=20963;Expression=AK066059;TENOR=Os06t0637400-01;KEGG=Os06t0637400-01
Chr06	irgsp1_rep	five_prime_UTR	25895947	25895998	.	+	.	Parent=Os06t0637400-01
Chr06	irgsp1_rep	CDS	25895999	25896277	.	+	0	Parent=Os06t0637400-01
Chr06	irgsp1_rep	three_prime_UTR	25896278	25897402	.	+	.	Parent=Os06t0637400-01
Chr06	irgsp1_rep	three_prime_UTR	25897451	25897896	.	+	.	Parent=Os06t0637400-01
Chr06	irgsp1_rep	mRNA	25899446	25900813	.	-	.	ID=Os06t0637500-02;Name=Os06t0637500-02;Locus_id=Os06g0637500;RAP-DB Gene Symbol Synonym(s)=OsMYB102;RAP-DB Gene Name Synonym(s)=MYB transcription factor 102;Oryzabase Gene Symbol Synonym(s)=R2R3-MYB%2C OsMYB102%2C MYB102;Oryzabase Gene Name Synonym(s)=Myb transcription factor 102;Note=MYB transcription factor%2C Regulation of leaf senescence;Transcript_evidence=AK121564,AK105817;ORF_evidence=Q67WF6;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeobox-like domain superfamily (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930);NIAS_FLcDNA=J033034J16,001-203-C12;Manual Curation=March 6%2C 2019;Literature_PMID=30825376;Oryzabase=16300;Expression=AK121564;TENOR=Os06t0637500-02;KEGG=Os06t0637500-02
Chr06	irgsp1_rep	five_prime_UTR	25900660	25900813	.	-	.	Parent=Os06t0637500-02
Chr06	irgsp1_rep	CDS	25899724	25900659	.	-	0	Parent=Os06t0637500-02
Chr06	irgsp1_rep	three_prime_UTR	25899446	25899723	.	-	.	Parent=Os06t0637500-02
Chr06	irgsp1_rep	mRNA	25905961	25906430	.	-	.	ID=Os06t0637800-01;Name=Os06t0637800-01;Locus_id=Os06g0637800;Note=Hypothetical gene.;Transcript_evidence=AK103506 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033131E02;Expression=AK103506;TENOR=Os06t0637800-01;KEGG=Os06t0637800-01
Chr06	irgsp1_rep	five_prime_UTR	25906430	25906430	.	-	.	Parent=Os06t0637800-01
Chr06	irgsp1_rep	CDS	25906073	25906429	.	-	0	Parent=Os06t0637800-01
Chr06	irgsp1_rep	three_prime_UTR	25905961	25906072	.	-	.	Parent=Os06t0637800-01
Chr06	irgsp1_rep	mRNA	25918101	25927833	.	+	.	ID=Os06t0638000-01;Name=Os06t0638000-01;Locus_id=Os06g0638000;RAP-DB Gene Symbol Synonym(s)=DCM1%2C SAW1;RAP-DB Gene Name Synonym(s)=Defective Callose in Meiosis 1%2C Swollen Anther Wall 1;CGSNL Gene Symbol=DCM1;CGSNL Gene Name=DEFECTIVE CALLOSE IN MEIOSIS 1;Oryzabase Gene Symbol Synonym(s)=OsDCM1;Oryzabase Gene Name Synonym(s)=defective callose in meiosis 1;Note=CCCH-tandem zinc finger protein%2C Meiotic cytokinesis%2C Regulation of gibberellin homeostasis%2C Control of anther development;Transcript_evidence=Inferred from literature;ORF_evidence=Q67WF0;GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C CCCH-type (IPR000571);Manual Curation=March 10%2C 2020;Literature_PMID=32149461,30419020;Oryzabase=22836;TENOR=Os06t0638000-00
Chr06	irgsp1_rep	five_prime_UTR	25918101	25918411	.	+	.	Parent=Os06t0638000-01
Chr06	irgsp1_rep	CDS	25918412	25923272	.	+	0	Parent=Os06t0638000-01
Chr06	irgsp1_rep	CDS	25924314	25924509	.	+	2	Parent=Os06t0638000-01
Chr06	irgsp1_rep	CDS	25924609	25924756	.	+	1	Parent=Os06t0638000-01
Chr06	irgsp1_rep	CDS	25925325	25925403	.	+	0	Parent=Os06t0638000-01
Chr06	irgsp1_rep	CDS	25925803	25925890	.	+	2	Parent=Os06t0638000-01
Chr06	irgsp1_rep	CDS	25925982	25926252	.	+	1	Parent=Os06t0638000-01
Chr06	irgsp1_rep	CDS	25926328	25926370	.	+	0	Parent=Os06t0638000-01
Chr06	irgsp1_rep	CDS	25926453	25926556	.	+	2	Parent=Os06t0638000-01
Chr06	irgsp1_rep	CDS	25927026	25927442	.	+	0	Parent=Os06t0638000-01
Chr06	irgsp1_rep	three_prime_UTR	25927443	25927833	.	+	.	Parent=Os06t0638000-01
Chr06	irgsp1_rep	mRNA	25928042	25930601	.	-	.	ID=Os06t0638100-01;Name=Os06t0638100-01;Locus_id=Os06g0638100;Note=Similar to Tic21.;Transcript_evidence=AK073270 (DDBJ%2C Best hit);ORF_evidence=Q09S70 (UniProt);InterPro=Protein of unknown function DUF3611 (IPR022051);NIAS_FLcDNA=J033027A18;Expression=AK073270;TENOR=Os06t0638100-01;KEGG=Os06t0638100-01
Chr06	irgsp1_rep	five_prime_UTR	25930559	25930601	.	-	.	Parent=Os06t0638100-01
Chr06	irgsp1_rep	CDS	25930277	25930558	.	-	0	Parent=Os06t0638100-01
Chr06	irgsp1_rep	CDS	25929146	25929403	.	-	0	Parent=Os06t0638100-01
Chr06	irgsp1_rep	CDS	25928591	25928794	.	-	0	Parent=Os06t0638100-01
Chr06	irgsp1_rep	CDS	25928341	25928460	.	-	0	Parent=Os06t0638100-01
Chr06	irgsp1_rep	three_prime_UTR	25928042	25928340	.	-	.	Parent=Os06t0638100-01
Chr06	irgsp1_rep	mRNA	25928040	25929248	.	-	.	ID=Os06t0638100-02;Name=Os06t0638100-02;Locus_id=Os06g0638100;Note=Similar to Tic21.;Transcript_evidence=AK063888 (DDBJ%2C Best hit);ORF_evidence=Q09S70 (UniProt);InterPro=Protein of unknown function DUF3611 (IPR022051);NIAS_FLcDNA=001-122-G03;Expression=AK063888;TENOR=Os06t0638100-02;KEGG=Os06t0638100-02
Chr06	irgsp1_rep	five_prime_UTR	25929248	25929248	.	-	.	Parent=Os06t0638100-02
Chr06	irgsp1_rep	CDS	25929146	25929247	.	-	0	Parent=Os06t0638100-02
Chr06	irgsp1_rep	CDS	25928591	25928794	.	-	0	Parent=Os06t0638100-02
Chr06	irgsp1_rep	CDS	25928341	25928460	.	-	0	Parent=Os06t0638100-02
Chr06	irgsp1_rep	three_prime_UTR	25928040	25928340	.	-	.	Parent=Os06t0638100-02
Chr06	irgsp1_rep	mRNA	25933564	25934923	.	+	.	ID=Os06t0638200-01;Name=Os06t0638200-01;Locus_id=Os06g0638200;Note=Uncharacterised protein family UPF0047 domain containing protein.;Transcript_evidence=AK059450 (DDBJ%2C Best hit);ORF_evidence=B9FQ34 (UniProt);InterPro=Uncharacterised protein family UPF0047 (IPR001602);NIAS_FLcDNA=001-028-B03;Expression=AK059450;TENOR=Os06t0638200-01;KEGG=Os06t0638200-01
Chr06	irgsp1_rep	five_prime_UTR	25933564	25933565	.	+	.	Parent=Os06t0638200-01
Chr06	irgsp1_rep	CDS	25933566	25933658	.	+	0	Parent=Os06t0638200-01
Chr06	irgsp1_rep	CDS	25933746	25933779	.	+	0	Parent=Os06t0638200-01
Chr06	irgsp1_rep	CDS	25934203	25934257	.	+	2	Parent=Os06t0638200-01
Chr06	irgsp1_rep	CDS	25934339	25934381	.	+	1	Parent=Os06t0638200-01
Chr06	irgsp1_rep	CDS	25934716	25934787	.	+	0	Parent=Os06t0638200-01
Chr06	irgsp1_rep	three_prime_UTR	25934788	25934923	.	+	.	Parent=Os06t0638200-01
Chr06	irgsp1_rep	mRNA	25941436	25944049	.	+	.	ID=Os06t0638300-01;Name=Os06t0638300-01;Locus_id=Os06g0638300;Note=Similar to Exostosin-like.;Transcript_evidence=AK242800 (DDBJ%2C Best hit);ORF_evidence=B6TA15 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);NIAS_FLcDNA=J090058M19;TENOR=Os06t0638300-01;KEGG=Os06t0638300-01
Chr06	irgsp1_rep	five_prime_UTR	25941436	25941447	.	+	.	Parent=Os06t0638300-01
Chr06	irgsp1_rep	CDS	25941448	25941840	.	+	0	Parent=Os06t0638300-01
Chr06	irgsp1_rep	CDS	25942450	25942663	.	+	0	Parent=Os06t0638300-01
Chr06	irgsp1_rep	CDS	25942762	25942805	.	+	2	Parent=Os06t0638300-01
Chr06	irgsp1_rep	three_prime_UTR	25942806	25942994	.	+	.	Parent=Os06t0638300-01
Chr06	irgsp1_rep	three_prime_UTR	25943125	25944049	.	+	.	Parent=Os06t0638300-01
Chr06	irgsp1_rep	mRNA	25945798	25947304	.	+	.	ID=Os06t0638400-01;Name=Os06t0638400-01;Locus_id=Os06g0638400;Note=Hypothetical protein.;Transcript_evidence=AK109644 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-138-G12;Expression=AK109644;TENOR=Os06t0638400-01;KEGG=Os06t0638400-01
Chr06	irgsp1_rep	five_prime_UTR	25945798	25946425	.	+	.	Parent=Os06t0638400-01
Chr06	irgsp1_rep	CDS	25946426	25946695	.	+	0	Parent=Os06t0638400-01
Chr06	irgsp1_rep	three_prime_UTR	25946696	25947304	.	+	.	Parent=Os06t0638400-01
Chr06	irgsp1_rep	mRNA	25946419	25949605	.	-	.	ID=Os06t0638500-00;Name=Os06t0638500-00;Locus_id=Os06g0638500;Note=Tyrosine protein kinase domain containing protein.;Transcript_evidence=AK360940 (DDBJ);ORF_evidence=Q67WE5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os06t0638500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	25949429	25949605	.	-	.	Parent=Os06t0638500-00
Chr06	irgsp1_rep	CDS	25947541	25949428	.	-	0	Parent=Os06t0638500-00
Chr06	irgsp1_rep	CDS	25946419	25947161	.	-	2	Parent=Os06t0638500-00
Chr06	irgsp1_rep	mRNA	25959471	25963252	.	-	.	ID=Os06t0638700-01;Name=Os06t0638700-01;Locus_id=Os06g0638700;Oryzabase Gene Symbol Synonym(s)=OsCYL2%2C CYL2;Oryzabase Gene Name Synonym(s)=cyclase-like 2;Note=Putative cyclase family protein.;Transcript_evidence=AK108500 (DDBJ%2C Best hit);ORF_evidence=NP_001150336.1 (RefSeq);InterPro=Putative cyclase (IPR007325);NIAS_FLcDNA=002-143-H03;Oryzabase=19886;Expression=AK108500;TENOR=Os06t0638700-01;KEGG=Os06t0638700-01
Chr06	irgsp1_rep	five_prime_UTR	25963225	25963252	.	-	.	Parent=Os06t0638700-01
Chr06	irgsp1_rep	CDS	25962819	25963224	.	-	0	Parent=Os06t0638700-01
Chr06	irgsp1_rep	CDS	25961486	25961530	.	-	2	Parent=Os06t0638700-01
Chr06	irgsp1_rep	CDS	25961142	25961214	.	-	2	Parent=Os06t0638700-01
Chr06	irgsp1_rep	CDS	25960946	25961043	.	-	1	Parent=Os06t0638700-01
Chr06	irgsp1_rep	CDS	25960748	25960818	.	-	2	Parent=Os06t0638700-01
Chr06	irgsp1_rep	CDS	25959660	25959785	.	-	0	Parent=Os06t0638700-01
Chr06	irgsp1_rep	three_prime_UTR	25959471	25959659	.	-	.	Parent=Os06t0638700-01
Chr06	irgsp1_rep	mRNA	25963878	25967328	.	-	.	ID=Os06t0638900-01;Name=Os06t0638900-01;Locus_id=Os06g0638900;Note=Similar to calcium-binding protein.;Transcript_evidence=AK058988 (DDBJ%2C Best hit);ORF_evidence=NP_001147099.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=001-020-F01;TENOR=Os06t0638900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	25967295	25967328	.	-	0	Parent=Os06t0638900-01
Chr06	irgsp1_rep	CDS	25967064	25967168	.	-	2	Parent=Os06t0638900-01
Chr06	irgsp1_rep	CDS	25965270	25965445	.	-	2	Parent=Os06t0638900-01
Chr06	irgsp1_rep	three_prime_UTR	25965059	25965269	.	-	.	Parent=Os06t0638900-01
Chr06	irgsp1_rep	three_prime_UTR	25964480	25964981	.	-	.	Parent=Os06t0638900-01
Chr06	irgsp1_rep	three_prime_UTR	25963878	25964377	.	-	.	Parent=Os06t0638900-01
Chr06	irgsp1_rep	mRNA	25973833	25974644	.	-	.	ID=Os06t0639100-01;Name=Os06t0639100-01;Locus_id=Os06g0639100;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK102470 (DDBJ%2C Best hit);ORF_evidence=NP_001119113.1 (RefSeq);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-CH-type (IPR011016),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J033094G05;TENOR=Os06t0639100-01;KEGG=Os06t0639100-01 (EC:6.3.2.19)
Chr06	irgsp1_rep	five_prime_UTR	25974542	25974644	.	-	.	Parent=Os06t0639100-01
Chr06	irgsp1_rep	CDS	25974152	25974541	.	-	0	Parent=Os06t0639100-01
Chr06	irgsp1_rep	three_prime_UTR	25973833	25974151	.	-	.	Parent=Os06t0639100-01
Chr06	irgsp1_rep	mRNA	25968133	25974634	.	-	.	ID=Os06t0639100-02;Name=Os06t0639100-02;Locus_id=Os06g0639100;Note=Similar to protein binding / zinc ion binding.;Transcript_evidence=AK289230 (DDBJ%2C Best hit);ORF_evidence=NP_001119113.1 (RefSeq);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-CH-type (IPR011016),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J100070D13;TENOR=Os06t0639100-02;KEGG=Os06t0639100-02 (EC:6.3.2.19)
Chr06	irgsp1_rep	five_prime_UTR	25974542	25974634	.	-	.	Parent=Os06t0639100-02
Chr06	irgsp1_rep	CDS	25974293	25974541	.	-	0	Parent=Os06t0639100-02
Chr06	irgsp1_rep	CDS	25972772	25973452	.	-	0	Parent=Os06t0639100-02
Chr06	irgsp1_rep	CDS	25970944	25971711	.	-	0	Parent=Os06t0639100-02
Chr06	irgsp1_rep	CDS	25970650	25970861	.	-	0	Parent=Os06t0639100-02
Chr06	irgsp1_rep	CDS	25970188	25970556	.	-	1	Parent=Os06t0639100-02
Chr06	irgsp1_rep	CDS	25969667	25969824	.	-	1	Parent=Os06t0639100-02
Chr06	irgsp1_rep	CDS	25969386	25969549	.	-	2	Parent=Os06t0639100-02
Chr06	irgsp1_rep	CDS	25969076	25969222	.	-	0	Parent=Os06t0639100-02
Chr06	irgsp1_rep	CDS	25968441	25968959	.	-	0	Parent=Os06t0639100-02
Chr06	irgsp1_rep	three_prime_UTR	25968133	25968440	.	-	.	Parent=Os06t0639100-02
Chr06	irgsp1_rep	mRNA	25968134	25969750	.	-	.	ID=Os06t0639100-03;Name=Os06t0639100-03;Locus_id=Os06g0639100;Note=Similar to protein binding / zinc ion binding.;Transcript_evidence=AK065890 (DDBJ%2C Best hit);ORF_evidence=NP_001119113.1 (RefSeq);NIAS_FLcDNA=J013043L16;Expression=AK065890;TENOR=Os06t0639100-03;KEGG=Os06t0639100-03 (EC:6.3.2.19)
Chr06	irgsp1_rep	five_prime_UTR	25969749	25969750	.	-	.	Parent=Os06t0639100-03
Chr06	irgsp1_rep	CDS	25969667	25969748	.	-	0	Parent=Os06t0639100-03
Chr06	irgsp1_rep	CDS	25969386	25969549	.	-	2	Parent=Os06t0639100-03
Chr06	irgsp1_rep	CDS	25969076	25969222	.	-	0	Parent=Os06t0639100-03
Chr06	irgsp1_rep	CDS	25968441	25968959	.	-	0	Parent=Os06t0639100-03
Chr06	irgsp1_rep	three_prime_UTR	25968134	25968440	.	-	.	Parent=Os06t0639100-03
Chr06	irgsp1_rep	mRNA	25968017	25969532	.	-	.	ID=Os06t0639100-04;Name=Os06t0639100-04;Locus_id=Os06g0639100;Note=Similar to predicted protein.;Transcript_evidence=AK104775 (DDBJ%2C Best hit),AK059723 (DDBJ%2C Best hit);ORF_evidence=NP_001119113.1 (RefSeq);NIAS_FLcDNA=001-039-B08,006-201-A08;Expression=AK104775;TENOR=Os06t0639100-04;KEGG=Os06t0639100-04 (EC:6.3.2.19)
Chr06	irgsp1_rep	CDS	25969386	25969532	.	-	0	Parent=Os06t0639100-04
Chr06	irgsp1_rep	CDS	25969076	25969222	.	-	0	Parent=Os06t0639100-04
Chr06	irgsp1_rep	CDS	25968441	25968959	.	-	0	Parent=Os06t0639100-04
Chr06	irgsp1_rep	three_prime_UTR	25968017	25968440	.	-	.	Parent=Os06t0639100-04
Chr06	irgsp1_rep	mRNA	25968272	25969428	.	-	.	ID=Os06t0639100-05;Name=Os06t0639100-05;Locus_id=Os06g0639100;Note=Similar to predicted protein.;Transcript_evidence=AK063162 (DDBJ%2C Best hit);ORF_evidence=NP_001119113.1 (RefSeq);NIAS_FLcDNA=001-047-D07;Expression=AK063162;TENOR=Os06t0639100-05;KEGG=Os06t0639100-05 (EC:6.3.2.19)
Chr06	irgsp1_rep	five_prime_UTR	25969428	25969428	.	-	.	Parent=Os06t0639100-05
Chr06	irgsp1_rep	CDS	25969386	25969427	.	-	0	Parent=Os06t0639100-05
Chr06	irgsp1_rep	CDS	25969076	25969222	.	-	0	Parent=Os06t0639100-05
Chr06	irgsp1_rep	CDS	25968441	25968959	.	-	0	Parent=Os06t0639100-05
Chr06	irgsp1_rep	three_prime_UTR	25968272	25968440	.	-	.	Parent=Os06t0639100-05
Chr06	irgsp1_rep	mRNA	25970491	25974468	.	+	.	ID=Os06t0639150-00;Name=Os06t0639150-00;Locus_id=Os06g0639150;Note=Non-protein coding transcript.;Transcript_evidence=BT083666 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0639150-00
Chr06	irgsp1_rep	exon	25970491	25970546	.	+	.	Parent=Os06t0639150-00
Chr06	irgsp1_rep	exon	25970639	25970857	.	+	.	Parent=Os06t0639150-00
Chr06	irgsp1_rep	exon	25970938	25971709	.	+	.	Parent=Os06t0639150-00
Chr06	irgsp1_rep	exon	25972770	25973442	.	+	.	Parent=Os06t0639150-00
Chr06	irgsp1_rep	exon	25974283	25974468	.	+	.	Parent=Os06t0639150-00
Chr06	irgsp1_rep	mRNA	25976989	25980815	.	-	.	ID=Os06t0639200-01;Name=Os06t0639200-01;Locus_id=Os06g0639200;CGSNL Gene Symbol=AP2/EREBP59;CGSNL Gene Name=APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 59;Oryzabase Gene Symbol Synonym(s)=AP2/EREBP#059%2C AP2-4;Oryzabase Gene Name Synonym(s)=APETALA2/ethylene-responsive element binding protein 59%2C APETALA2-4;Note=Similar to Transcription factor AP2D22 (Fragment).;Transcript_evidence=AK242957 (DDBJ%2C Best hit);ORF_evidence=Q2TQ35 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J090089I15;Oryzabase=10665;TENOR=Os06t0639200-01;KEGG=Os06t0639200-01
Chr06	irgsp1_rep	five_prime_UTR	25980269	25980815	.	-	.	Parent=Os06t0639200-01
Chr06	irgsp1_rep	five_prime_UTR	25980074	25980128	.	-	.	Parent=Os06t0639200-01
Chr06	irgsp1_rep	CDS	25980040	25980073	.	-	0	Parent=Os06t0639200-01
Chr06	irgsp1_rep	CDS	25979903	25979933	.	-	2	Parent=Os06t0639200-01
Chr06	irgsp1_rep	CDS	25979679	25979766	.	-	1	Parent=Os06t0639200-01
Chr06	irgsp1_rep	CDS	25979427	25979572	.	-	0	Parent=Os06t0639200-01
Chr06	irgsp1_rep	CDS	25979265	25979309	.	-	1	Parent=Os06t0639200-01
Chr06	irgsp1_rep	CDS	25979081	25979172	.	-	1	Parent=Os06t0639200-01
Chr06	irgsp1_rep	CDS	25978638	25978747	.	-	2	Parent=Os06t0639200-01
Chr06	irgsp1_rep	CDS	25978399	25978554	.	-	0	Parent=Os06t0639200-01
Chr06	irgsp1_rep	CDS	25977396	25977698	.	-	0	Parent=Os06t0639200-01
Chr06	irgsp1_rep	three_prime_UTR	25976989	25977395	.	-	.	Parent=Os06t0639200-01
Chr06	irgsp1_rep	mRNA	25977160	25977810	.	+	.	ID=Os06t0639250-00;Name=Os06t0639250-00;Locus_id=Os06g0639250;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q67WD8 (UniProt);TENOR=Os06t0639250-00
Chr06	irgsp1_rep	CDS	25977160	25977810	.	+	0	Parent=Os06t0639250-00
Chr06	irgsp1_rep	mRNA	25990415	25993219	.	+	.	ID=Os06t0639300-01;Name=Os06t0639300-01;Locus_id=Os06g0639300;Note=Nicotinamide N-methyltransferase%2C putative domain containing protein.;Transcript_evidence=AK108166 (DDBJ%2C Best hit);ORF_evidence=B9FQ42 (UniProt);InterPro=Nicotinamide N-methyltransferase%2C putative (IPR019410);NIAS_FLcDNA=002-139-H06;TENOR=Os06t0639300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	25990415	25990415	.	+	.	Parent=Os06t0639300-01
Chr06	irgsp1_rep	CDS	25990416	25990578	.	+	0	Parent=Os06t0639300-01
Chr06	irgsp1_rep	CDS	25990697	25990768	.	+	2	Parent=Os06t0639300-01
Chr06	irgsp1_rep	CDS	25990857	25990931	.	+	2	Parent=Os06t0639300-01
Chr06	irgsp1_rep	CDS	25991014	25991078	.	+	2	Parent=Os06t0639300-01
Chr06	irgsp1_rep	CDS	25991156	25991258	.	+	0	Parent=Os06t0639300-01
Chr06	irgsp1_rep	CDS	25991364	25991414	.	+	2	Parent=Os06t0639300-01
Chr06	irgsp1_rep	CDS	25991923	25992076	.	+	2	Parent=Os06t0639300-01
Chr06	irgsp1_rep	CDS	25992433	25992577	.	+	1	Parent=Os06t0639300-01
Chr06	irgsp1_rep	CDS	25992691	25992796	.	+	0	Parent=Os06t0639300-01
Chr06	irgsp1_rep	CDS	25992919	25993067	.	+	2	Parent=Os06t0639300-01
Chr06	irgsp1_rep	three_prime_UTR	25993068	25993219	.	+	.	Parent=Os06t0639300-01
Chr06	irgsp1_rep	mRNA	26003182	26007060	.	+	.	ID=Os06t0639500-01;Name=Os06t0639500-01;Locus_id=Os06g0639500;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK068750 (DDBJ%2C Best hit);ORF_evidence=NP_001151989.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013158J24;Expression=AK068750;TENOR=Os06t0639500-01;KEGG=Os06t0639500-01
Chr06	irgsp1_rep	five_prime_UTR	26003182	26003428	.	+	.	Parent=Os06t0639500-01
Chr06	irgsp1_rep	five_prime_UTR	26004136	26004138	.	+	.	Parent=Os06t0639500-01
Chr06	irgsp1_rep	CDS	26004139	26004504	.	+	0	Parent=Os06t0639500-01
Chr06	irgsp1_rep	CDS	26004602	26004693	.	+	0	Parent=Os06t0639500-01
Chr06	irgsp1_rep	CDS	26004968	26005441	.	+	1	Parent=Os06t0639500-01
Chr06	irgsp1_rep	CDS	26005731	26006691	.	+	1	Parent=Os06t0639500-01
Chr06	irgsp1_rep	three_prime_UTR	26006692	26007060	.	+	.	Parent=Os06t0639500-01
Chr06	irgsp1_rep	mRNA	26005338	26006442	.	-	.	ID=Os06t0639550-01;Name=Os06t0639550-01;Locus_id=Os06g0639550;Note=Non-protein coding transcript.;Transcript_evidence=AK099542 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013032K11;TENOR=Os06t0639550-01
Chr06	irgsp1_rep	exon	26005731	26006442	.	-	.	Parent=Os06t0639550-01
Chr06	irgsp1_rep	exon	26005338	26005441	.	-	.	Parent=Os06t0639550-01
Chr06	irgsp1_rep	mRNA	26007058	26010413	.	-	.	ID=Os06t0639600-01;Name=Os06t0639600-01;Locus_id=Os06g0639600;Note=Similar to Elongator component.;Transcript_evidence=AK107552 (DDBJ%2C Best hit);ORF_evidence=B4FCR9 (UniProt);GO=Biological Process: regulation of transcription from RNA polymerase II promoter (GO:0006357),Cellular Component: Elongator holoenzyme complex (GO:0033588);InterPro=Elongator complex protein 4 (IPR008728);NIAS_FLcDNA=002-130-A11;Expression=AK107552;TENOR=Os06t0639600-01;KEGG=Os06t0639600-01
Chr06	irgsp1_rep	five_prime_UTR	26010190	26010413	.	-	.	Parent=Os06t0639600-01
Chr06	irgsp1_rep	CDS	26010039	26010189	.	-	0	Parent=Os06t0639600-01
Chr06	irgsp1_rep	CDS	26009297	26009547	.	-	2	Parent=Os06t0639600-01
Chr06	irgsp1_rep	CDS	26009132	26009207	.	-	0	Parent=Os06t0639600-01
Chr06	irgsp1_rep	CDS	26008497	26008653	.	-	2	Parent=Os06t0639600-01
Chr06	irgsp1_rep	CDS	26008240	26008320	.	-	1	Parent=Os06t0639600-01
Chr06	irgsp1_rep	CDS	26007939	26008096	.	-	1	Parent=Os06t0639600-01
Chr06	irgsp1_rep	CDS	26007756	26007847	.	-	2	Parent=Os06t0639600-01
Chr06	irgsp1_rep	CDS	26007476	26007643	.	-	0	Parent=Os06t0639600-01
Chr06	irgsp1_rep	three_prime_UTR	26007058	26007475	.	-	.	Parent=Os06t0639600-01
Chr06	irgsp1_rep	mRNA	26022263	26029047	.	-	.	ID=Os06t0639700-00;Name=Os06t0639700-00;Locus_id=Os06g0639700;Note=Hypothetical protein.;Transcript_evidence=tplb0041k22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0639700-00
Chr06	irgsp1_rep	five_prime_UTR	26028390	26029047	.	-	.	Parent=Os06t0639700-00
Chr06	irgsp1_rep	five_prime_UTR	26023224	26023225	.	-	.	Parent=Os06t0639700-00
Chr06	irgsp1_rep	CDS	26022702	26023223	.	-	0	Parent=Os06t0639700-00
Chr06	irgsp1_rep	three_prime_UTR	26022263	26022701	.	-	.	Parent=Os06t0639700-00
Chr06	irgsp1_rep	mRNA	26022267	26029240	.	+	.	ID=Os06t0639800-01;Name=Os06t0639800-01;Locus_id=Os06g0639800;CGSNL Gene Symbol=CYP71Y7;CGSNL Gene Name=CYTOCHROME P450 71Y7;Oryzabase Gene Symbol Synonym(s)=OsCYP71Y7;Oryzabase Gene Name Synonym(s)=CytoChrome P450 71Y7;Note=CytoChrome P450 family protein.;Transcript_evidence=AK060486 (DDBJ%2C Best hit),AK106068 (DDBJ%2C Best hit);ORF_evidence=B6SYC8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=001-013-E10,001-206-H02;Oryzabase=21833;TENOR=Os06t0639800-01
Chr06	irgsp1_rep	five_prime_UTR	26022267	26022300	.	+	.	Parent=Os06t0639800-01
Chr06	irgsp1_rep	CDS	26022301	26023227	.	+	0	Parent=Os06t0639800-01
Chr06	irgsp1_rep	CDS	26028387	26029046	.	+	0	Parent=Os06t0639800-01
Chr06	irgsp1_rep	three_prime_UTR	26029047	26029240	.	+	.	Parent=Os06t0639800-01
Chr06	irgsp1_rep	mRNA	26034890	26038156	.	+	.	ID=Os06t0640100-00;Name=Os06t0640100-00;Locus_id=Os06g0640100;Note=Similar to CytoChrome P450 CYP71Y10.;Transcript_evidence=BT067412 (DDBJ);ORF_evidence=B6SYC8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os06t0640100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	26034890	26035732	.	+	0	Parent=Os06t0640100-00
Chr06	irgsp1_rep	CDS	26037413	26038156	.	+	0	Parent=Os06t0640100-00
Chr06	irgsp1_rep	mRNA	26039709	26040374	.	-	.	ID=Os06t0640201-01;Name=Os06t0640201-01;Locus_id=Os06g0640201;Note=Hypothetical gene.;Transcript_evidence=AK241830 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065212O21;TENOR=Os06t0640201-01;KEGG=Os06t0640201-01
Chr06	irgsp1_rep	five_prime_UTR	26040373	26040374	.	-	.	Parent=Os06t0640201-01
Chr06	irgsp1_rep	CDS	26040022	26040372	.	-	0	Parent=Os06t0640201-01
Chr06	irgsp1_rep	three_prime_UTR	26039709	26040021	.	-	.	Parent=Os06t0640201-01
Chr06	irgsp1_rep	mRNA	26064727	26065292	.	-	.	ID=Os06t0640599-00;Name=Os06t0640599-00;Locus_id=Os06g0640599;Note=Hypothetical protein.;Transcript_evidence=EU942896 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0640599-00
Chr06	irgsp1_rep	five_prime_UTR	26065292	26065292	.	-	.	Parent=Os06t0640599-00
Chr06	irgsp1_rep	CDS	26064851	26065291	.	-	0	Parent=Os06t0640599-00
Chr06	irgsp1_rep	three_prime_UTR	26064727	26064850	.	-	.	Parent=Os06t0640599-00
Chr06	irgsp1_rep	mRNA	26073119	26074058	.	+	.	ID=Os06t0640800-00;Name=Os06t0640800-00;Locus_id=Os06g0640800;Note=Similar to CytoChrome P450 CYP71Y10.;Transcript_evidence=ab initio prediction;ORF_evidence=B6SYC8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os06t0640800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	26073119	26073268	.	+	0	Parent=Os06t0640800-00
Chr06	irgsp1_rep	CDS	26073411	26074058	.	+	0	Parent=Os06t0640800-00
Chr06	irgsp1_rep	mRNA	26073408	26074020	.	-	.	ID=Os06t0640933-00;Name=Os06t0640933-00;Locus_id=Os06g0640933;Note=Hypothetical protein.;Transcript_evidence=EU942896 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0640933-00
Chr06	irgsp1_rep	five_prime_UTR	26074020	26074020	.	-	.	Parent=Os06t0640933-00
Chr06	irgsp1_rep	CDS	26073546	26074019	.	-	0	Parent=Os06t0640933-00
Chr06	irgsp1_rep	three_prime_UTR	26073408	26073545	.	-	.	Parent=Os06t0640933-00
Chr06	irgsp1_rep	mRNA	26082422	26087072	.	-	.	ID=Os06t0641066-00;Name=Os06t0641066-00;Locus_id=Os06g0641066;Note=Hypothetical protein.;Transcript_evidence=tplb0041k22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0641066-00
Chr06	irgsp1_rep	five_prime_UTR	26086472	26087072	.	-	.	Parent=Os06t0641066-00
Chr06	irgsp1_rep	CDS	26086435	26086471	.	-	0	Parent=Os06t0641066-00
Chr06	irgsp1_rep	CDS	26082422	26083316	.	-	2	Parent=Os06t0641066-00
Chr06	irgsp1_rep	mRNA	26086429	26087091	.	+	.	ID=Os06t0641200-00;Name=Os06t0641200-00;Locus_id=Os06g0641200;Note=Similar to CytoChrome P450 CYP71Y10.;Transcript_evidence=ab initio prediction;ORF_evidence=B6SYC8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os06t0641200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	26086429	26087091	.	+	0	Parent=Os06t0641200-00
Chr06	irgsp1_rep	mRNA	26092437	26093341	.	-	.	ID=Os06t0641400-01;Name=Os06t0641400-01;Locus_id=Os06g0641400;Note=Hypothetical protein.;Transcript_evidence=AK071438 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023091P04;Expression=AK071438;TENOR=Os06t0641400-01;KEGG=Os06t0641400-01
Chr06	irgsp1_rep	five_prime_UTR	26093157	26093341	.	-	.	Parent=Os06t0641400-01
Chr06	irgsp1_rep	CDS	26092914	26093156	.	-	0	Parent=Os06t0641400-01
Chr06	irgsp1_rep	three_prime_UTR	26092437	26092913	.	-	.	Parent=Os06t0641400-01
Chr06	irgsp1_rep	mRNA	26092456	26094621	.	+	.	ID=Os06t0641500-00;Name=Os06t0641500-00;Locus_id=Os06g0641500;Note=Similar to CytoChrome P450 CYP71Y10.;Transcript_evidence=tplb0036k11 (Wheat FLcDNA);ORF_evidence=B6SYC8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os06t0641500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	26092456	26093198	.	+	0	Parent=Os06t0641500-00
Chr06	irgsp1_rep	CDS	26093728	26093911	.	+	1	Parent=Os06t0641500-00
Chr06	irgsp1_rep	CDS	26093980	26094621	.	+	0	Parent=Os06t0641500-00
Chr06	irgsp1_rep	mRNA	26096023	26096208	.	-	.	ID=Os06t0641550-00;Name=Os06t0641550-00;Locus_id=Os06g0641550;Note=Non-protein coding transcript.;Transcript_evidence=EU942775 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0641550-00
Chr06	irgsp1_rep	exon	26096023	26096208	.	-	.	Parent=Os06t0641550-00
Chr06	irgsp1_rep	mRNA	26097136	26098831	.	+	.	ID=Os06t0641575-00;Name=Os06t0641575-00;Locus_id=Os06g0641575;Note=Hypothetical protein.;Transcript_evidence=tplb0041k22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0641575-00
Chr06	irgsp1_rep	five_prime_UTR	26097136	26097774	.	+	.	Parent=Os06t0641575-00
Chr06	irgsp1_rep	five_prime_UTR	26097953	26098276	.	+	.	Parent=Os06t0641575-00
Chr06	irgsp1_rep	CDS	26098277	26098792	.	+	0	Parent=Os06t0641575-00
Chr06	irgsp1_rep	three_prime_UTR	26098793	26098831	.	+	.	Parent=Os06t0641575-00
Chr06	irgsp1_rep	mRNA	26097154	26098278	.	-	.	ID=Os06t0641600-00;Name=Os06t0641600-00;Locus_id=Os06g0641600;Note=Similar to CytoChrome P450 family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R0R5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os06t0641600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	26097961	26098278	.	-	0	Parent=Os06t0641600-00
Chr06	irgsp1_rep	CDS	26097154	26097777	.	-	0	Parent=Os06t0641600-00
Chr06	irgsp1_rep	mRNA	26105139	26105547	.	-	.	ID=Os06t0641800-00;Name=Os06t0641800-00;Locus_id=Os06g0641800;CGSNL Gene Symbol=CYP71K9;CGSNL Gene Name=CYTOCHROME P450 71K9;Oryzabase Gene Symbol Synonym(s)=OsCYP71K9;Oryzabase Gene Name Synonym(s)=CytoChrome P450 71K9;Note=CytoChrome P450 family protein.;Transcript_evidence=AJ437535 (DDBJ%2C Best hit);ORF_evidence=Q2R0R5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);Oryzabase=21830;TENOR=Os06t0641800-00;KEGG=Os06t0641800-00 (EC:1.14.14.1)
Chr06	irgsp1_rep	five_prime_UTR	26105546	26105547	.	-	.	Parent=Os06t0641800-00
Chr06	irgsp1_rep	CDS	26105228	26105545	.	-	0	Parent=Os06t0641800-00
Chr06	irgsp1_rep	three_prime_UTR	26105139	26105227	.	-	.	Parent=Os06t0641800-00
Chr06	irgsp1_rep	mRNA	26105242	26107212	.	+	.	ID=Os06t0641866-00;Name=Os06t0641866-00;Locus_id=Os06g0641866;Note=Hypothetical protein.;Transcript_evidence=tplb0041k22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0641866-00
Chr06	irgsp1_rep	five_prime_UTR	26105242	26105792	.	+	.	Parent=Os06t0641866-00
Chr06	irgsp1_rep	CDS	26105793	26105854	.	+	0	Parent=Os06t0641866-00
Chr06	irgsp1_rep	CDS	26106273	26107212	.	+	1	Parent=Os06t0641866-00
Chr06	irgsp1_rep	mRNA	26108639	26124135	.	+	.	ID=Os06t0641932-00;Name=Os06t0641932-00;Locus_id=Os06g0641932;Note=Hypothetical protein.;Transcript_evidence=tplb0041k22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0641932-00
Chr06	irgsp1_rep	five_prime_UTR	26108639	26109254	.	+	.	Parent=Os06t0641932-00
Chr06	irgsp1_rep	five_prime_UTR	26123232	26123349	.	+	.	Parent=Os06t0641932-00
Chr06	irgsp1_rep	CDS	26123350	26124135	.	+	0	Parent=Os06t0641932-00
Chr06	irgsp1_rep	mRNA	26137029	26139343	.	+	.	ID=Os06t0642200-00;Name=Os06t0642200-00;Locus_id=Os06g0642200;CGSNL Gene Symbol=CYP71K7;CGSNL Gene Name=CYTOCHROME P450 71K7;Oryzabase Gene Symbol Synonym(s)=OsCYP71K7;Oryzabase Gene Name Synonym(s)=CytoChrome P450 71K7;Note=Similar to CytoChrome P450 family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R0R5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);Oryzabase=21829;TENOR=Os06t0642200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	26137029	26137942	.	+	0	Parent=Os06t0642200-00
Chr06	irgsp1_rep	CDS	26138785	26139343	.	+	1	Parent=Os06t0642200-00
Chr06	irgsp1_rep	mRNA	26137067	26139319	.	-	.	ID=Os06t0642250-00;Name=Os06t0642250-00;Locus_id=Os06g0642250;Note=Hypothetical protein.;Transcript_evidence=tplb0024g24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0642250-00
Chr06	irgsp1_rep	five_prime_UTR	26138819	26139319	.	-	.	Parent=Os06t0642250-00
Chr06	irgsp1_rep	five_prime_UTR	26137923	26137945	.	-	.	Parent=Os06t0642250-00
Chr06	irgsp1_rep	CDS	26137185	26137922	.	-	0	Parent=Os06t0642250-00
Chr06	irgsp1_rep	three_prime_UTR	26137067	26137184	.	-	.	Parent=Os06t0642250-00
Chr06	irgsp1_rep	mRNA	26145806	26146729	.	+	.	ID=Os06t0642300-00;Name=Os06t0642300-00;Locus_id=Os06g0642300;Note=Similar to CytoChrome P450 family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R0R5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);TENOR=Os06t0642300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	26145806	26146729	.	+	0	Parent=Os06t0642300-00
Chr06	irgsp1_rep	mRNA	26145864	26148447	.	-	.	ID=Os06t0642400-00;Name=Os06t0642400-00;Locus_id=Os06g0642400;Note=Hypothetical protein.;Transcript_evidence=tplb0041k22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0642400-00
Chr06	irgsp1_rep	five_prime_UTR	26148431	26148447	.	-	.	Parent=Os06t0642400-00
Chr06	irgsp1_rep	CDS	26148002	26148430	.	-	0	Parent=Os06t0642400-00
Chr06	irgsp1_rep	three_prime_UTR	26147844	26148001	.	-	.	Parent=Os06t0642400-00
Chr06	irgsp1_rep	three_prime_UTR	26145864	26146717	.	-	.	Parent=Os06t0642400-00
Chr06	irgsp1_rep	mRNA	26155464	26158932	.	+	.	ID=Os06t0642500-01;Name=Os06t0642500-01;Locus_id=Os06g0642500;Note=CytoChrome P450 domain containing protein.;Transcript_evidence=AK072307 (DDBJ%2C Best hit);ORF_evidence=A2YFH9 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);NIAS_FLcDNA=J023020N11;TENOR=Os06t0642500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	26155464	26155647	.	+	.	Parent=Os06t0642500-01
Chr06	irgsp1_rep	CDS	26155648	26155740	.	+	0	Parent=Os06t0642500-01
Chr06	irgsp1_rep	CDS	26156178	26157153	.	+	0	Parent=Os06t0642500-01
Chr06	irgsp1_rep	CDS	26158179	26158180	.	+	2	Parent=Os06t0642500-01
Chr06	irgsp1_rep	three_prime_UTR	26158181	26158932	.	+	.	Parent=Os06t0642500-01
Chr06	irgsp1_rep	mRNA	26155564	26159072	.	+	.	ID=Os06t0642500-02;Name=Os06t0642500-02;Locus_id=Os06g0642500;Note=CytoChrome P450 domain containing protein.;Transcript_evidence=AK067059 (DDBJ%2C Best hit);ORF_evidence=A2YFH9 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);NIAS_FLcDNA=J013090O06;TENOR=Os06t0642500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	26155564	26155740	.	+	.	Parent=Os06t0642500-02
Chr06	irgsp1_rep	five_prime_UTR	26156100	26156147	.	+	.	Parent=Os06t0642500-02
Chr06	irgsp1_rep	CDS	26156148	26157153	.	+	0	Parent=Os06t0642500-02
Chr06	irgsp1_rep	CDS	26158179	26158180	.	+	2	Parent=Os06t0642500-02
Chr06	irgsp1_rep	three_prime_UTR	26158181	26159072	.	+	.	Parent=Os06t0642500-02
Chr06	irgsp1_rep	mRNA	26159547	26161453	.	+	.	ID=Os06t0642550-01;Name=Os06t0642550-01;Locus_id=Os06g0642550;Note=Hypothetical gene.;Transcript_evidence=AK289193 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100041A07;TENOR=Os06t0642550-01;KEGG=Os06t0642550-01
Chr06	irgsp1_rep	five_prime_UTR	26159547	26159852	.	+	.	Parent=Os06t0642550-01
Chr06	irgsp1_rep	CDS	26159853	26160449	.	+	0	Parent=Os06t0642550-01
Chr06	irgsp1_rep	CDS	26160550	26161389	.	+	0	Parent=Os06t0642550-01
Chr06	irgsp1_rep	three_prime_UTR	26161390	26161453	.	+	.	Parent=Os06t0642550-01
Chr06	irgsp1_rep	mRNA	26159811	26161425	.	-	.	ID=Os06t0642600-00;Name=Os06t0642600-00;Locus_id=Os06g0642600;Note=Similar to CytoChrome P450 CYP71Y10.;Transcript_evidence=BT067412 (DDBJ);ORF_evidence=B6SYC8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os06t0642600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	26160490	26161425	.	-	0	Parent=Os06t0642600-00
Chr06	irgsp1_rep	CDS	26159811	26160389	.	-	0	Parent=Os06t0642600-00
Chr06	irgsp1_rep	mRNA	26162546	26164599	.	-	.	ID=Os06t0642650-01;Name=Os06t0642650-01;Locus_id=Os06g0642650;Note=Hypothetical conserved gene.;Transcript_evidence=AK241715 (DDBJ%2C Best hit);ORF_evidence=Q67WV8 (UniProt);NIAS_FLcDNA=J065197L12;TENOR=Os06t0642650-01;KEGG=Os06t0642650-01
Chr06	irgsp1_rep	five_prime_UTR	26164428	26164599	.	-	.	Parent=Os06t0642650-01
Chr06	irgsp1_rep	CDS	26164218	26164427	.	-	0	Parent=Os06t0642650-01
Chr06	irgsp1_rep	CDS	26163645	26163789	.	-	0	Parent=Os06t0642650-01
Chr06	irgsp1_rep	CDS	26163355	26163542	.	-	2	Parent=Os06t0642650-01
Chr06	irgsp1_rep	CDS	26163077	26163244	.	-	0	Parent=Os06t0642650-01
Chr06	irgsp1_rep	CDS	26162888	26162974	.	-	0	Parent=Os06t0642650-01
Chr06	irgsp1_rep	three_prime_UTR	26162546	26162887	.	-	.	Parent=Os06t0642650-01
Chr06	irgsp1_rep	mRNA	26183542	26187011	.	-	.	ID=Os06t0642900-01;Name=Os06t0642900-01;Locus_id=Os06g0642900;Note=Ubiquitin system component Cue domain containing protein.;Transcript_evidence=AK073896 (DDBJ%2C Best hit);ORF_evidence=NP_001149805.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin system component Cue (IPR003892),UBA-like (IPR009060);NIAS_FLcDNA=J033072G12;Expression=AK073896;TENOR=Os06t0642900-01;KEGG=Os06t0642900-01
Chr06	irgsp1_rep	five_prime_UTR	26186812	26187011	.	-	.	Parent=Os06t0642900-01
Chr06	irgsp1_rep	CDS	26186629	26186811	.	-	0	Parent=Os06t0642900-01
Chr06	irgsp1_rep	CDS	26185425	26185581	.	-	0	Parent=Os06t0642900-01
Chr06	irgsp1_rep	CDS	26184469	26184695	.	-	2	Parent=Os06t0642900-01
Chr06	irgsp1_rep	CDS	26184153	26184326	.	-	0	Parent=Os06t0642900-01
Chr06	irgsp1_rep	CDS	26183969	26184055	.	-	0	Parent=Os06t0642900-01
Chr06	irgsp1_rep	three_prime_UTR	26183542	26183968	.	-	.	Parent=Os06t0642900-01
Chr06	irgsp1_rep	mRNA	26183911	26184300	.	+	.	ID=Os06t0642950-00;Name=Os06t0642950-00;Locus_id=Os06g0642950;Note=Non-protein coding transcript.;Transcript_evidence=BT016965 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0642950-00
Chr06	irgsp1_rep	exon	26183911	26184035	.	+	.	Parent=Os06t0642950-00
Chr06	irgsp1_rep	exon	26184134	26184300	.	+	.	Parent=Os06t0642950-00
Chr06	irgsp1_rep	mRNA	26190057	26198119	.	-	.	ID=Os06t0643000-01;Name=Os06t0643000-01;Locus_id=Os06g0643000;RAP-DB Gene Symbol Synonym(s)=GPA5;RAP-DB Gene Name Synonym(s)=glutelin precursor accumulation5;CGSNL Gene Symbol=GPA5;CGSNL Gene Name=GLUTELIN PRECURSOR ACCUMULATION 5;Oryzabase Gene Symbol Synonym(s)=OsGPA5;Oryzabase Gene Name Synonym(s)=glutelin precursor accumulation5;Note=Plant-unique phox-homology domain-containing protein%2C Rab5a effector%2C Mediation of tethering and membrane fusion of dense vesicles (DVs) with protein storage vacuoles (PSVs) in rice endosperm;Transcript_evidence=AK067701;ORF_evidence=Q67WV5;GO=Molecular Function: phosphatidylinositol binding (GO:0035091);InterPro=PX domain superfamily (IPR036871),Phox homologous domain (IPR001683);NIAS_FLcDNA=J013114M13;Manual Curation=January 20%2C 2020;Literature_PMID=31949008;Oryzabase=23453;Expression=AK067701;TENOR=Os06t0643000-01;KEGG=Os06t0643000-01;Subcellular location=cytosol (GO:0005829), cytoplasm (GO:0005737) [punctate compartment]
Chr06	irgsp1_rep	five_prime_UTR	26197882	26198119	.	-	.	Parent=Os06t0643000-01
Chr06	irgsp1_rep	CDS	26197759	26197881	.	-	0	Parent=Os06t0643000-01
Chr06	irgsp1_rep	CDS	26196531	26196659	.	-	0	Parent=Os06t0643000-01
Chr06	irgsp1_rep	CDS	26195516	26195614	.	-	0	Parent=Os06t0643000-01
Chr06	irgsp1_rep	CDS	26194810	26194902	.	-	0	Parent=Os06t0643000-01
Chr06	irgsp1_rep	CDS	26194592	26194700	.	-	0	Parent=Os06t0643000-01
Chr06	irgsp1_rep	CDS	26193793	26194466	.	-	2	Parent=Os06t0643000-01
Chr06	irgsp1_rep	CDS	26193462	26193626	.	-	0	Parent=Os06t0643000-01
Chr06	irgsp1_rep	CDS	26193121	26193363	.	-	0	Parent=Os06t0643000-01
Chr06	irgsp1_rep	CDS	26191528	26191746	.	-	0	Parent=Os06t0643000-01
Chr06	irgsp1_rep	CDS	26190564	26190842	.	-	0	Parent=Os06t0643000-01
Chr06	irgsp1_rep	three_prime_UTR	26190057	26190563	.	-	.	Parent=Os06t0643000-01
Chr06	irgsp1_rep	mRNA	26190185	26198253	.	+	.	ID=Os06t0643050-00;Name=Os06t0643050-00;Locus_id=Os06g0643050;Note=Hypothetical protein.;Transcript_evidence=tplb0047n02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0643050-00
Chr06	irgsp1_rep	five_prime_UTR	26190185	26190826	.	+	.	Parent=Os06t0643050-00
Chr06	irgsp1_rep	five_prime_UTR	26191512	26191724	.	+	.	Parent=Os06t0643050-00
Chr06	irgsp1_rep	five_prime_UTR	26193101	26193352	.	+	.	Parent=Os06t0643050-00
Chr06	irgsp1_rep	five_prime_UTR	26193452	26193622	.	+	.	Parent=Os06t0643050-00
Chr06	irgsp1_rep	five_prime_UTR	26193789	26194461	.	+	.	Parent=Os06t0643050-00
Chr06	irgsp1_rep	five_prime_UTR	26194582	26194653	.	+	.	Parent=Os06t0643050-00
Chr06	irgsp1_rep	CDS	26194654	26194700	.	+	0	Parent=Os06t0643050-00
Chr06	irgsp1_rep	CDS	26194810	26194907	.	+	1	Parent=Os06t0643050-00
Chr06	irgsp1_rep	CDS	26195521	26195608	.	+	2	Parent=Os06t0643050-00
Chr06	irgsp1_rep	CDS	26196524	26196658	.	+	1	Parent=Os06t0643050-00
Chr06	irgsp1_rep	CDS	26197758	26198034	.	+	1	Parent=Os06t0643050-00
Chr06	irgsp1_rep	three_prime_UTR	26198035	26198253	.	+	.	Parent=Os06t0643050-00
Chr06	irgsp1_rep	mRNA	26199409	26202782	.	-	.	ID=Os06t0643100-01;Name=Os06t0643100-01;Locus_id=Os06g0643100;Oryzabase Gene Symbol Synonym(s)=OsPBC1;Oryzabase Gene Name Synonym(s)=20S proteasome beta3 subunit;Note=Proteasome subunit beta type 3 (EC 3.4.25.1) (20S proteasome alpha subunit C) (20S proteasome subunit beta-3).;Transcript_evidence=AK070915 (DDBJ%2C Best hit);ORF_evidence=B8B0S6 (UniProt);GO=Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603),Cellular Component: proteasome core complex (GO:0005839),Molecular Function: endopeptidase activity (GO:0004175),Molecular Function: threonine-type endopeptidase activity (GO:0004298);InterPro=Proteasome%2C subunit alpha/beta (IPR001353),Proteasome%2C beta-type subunit%2C conserved site (IPR016050),Proteasome B-type subunit (IPR023333);NIAS_FLcDNA=J023064O06;Oryzabase=14502;Expression=AK070915;TENOR=Os06t0643100-01;KEGG=Os06t0643100-01 (EC:3.4.25.1)
Chr06	irgsp1_rep	five_prime_UTR	26202690	26202782	.	-	.	Parent=Os06t0643100-01
Chr06	irgsp1_rep	CDS	26202684	26202689	.	-	0	Parent=Os06t0643100-01
Chr06	irgsp1_rep	CDS	26202423	26202604	.	-	0	Parent=Os06t0643100-01
Chr06	irgsp1_rep	CDS	26202218	26202325	.	-	1	Parent=Os06t0643100-01
Chr06	irgsp1_rep	CDS	26201042	26201131	.	-	1	Parent=Os06t0643100-01
Chr06	irgsp1_rep	CDS	26200347	26200431	.	-	1	Parent=Os06t0643100-01
Chr06	irgsp1_rep	CDS	26200051	26200145	.	-	0	Parent=Os06t0643100-01
Chr06	irgsp1_rep	CDS	26199739	26199787	.	-	1	Parent=Os06t0643100-01
Chr06	irgsp1_rep	three_prime_UTR	26199409	26199738	.	-	.	Parent=Os06t0643100-01
Chr06	irgsp1_rep	mRNA	26215500	26218653	.	+	.	ID=Os06t0643300-01;Name=Os06t0643300-01;Locus_id=Os06g0643300;Oryzabase Gene Name Synonym(s)=development protein;Note=Development protein-like protein.;Transcript_evidence=AK061733 (DDBJ%2C Best hit);ORF_evidence=A2YFI5 (UniProt);GO=Biological Process: protein transport (GO:0015031);InterPro=Snf7 (IPR005024);NIAS_FLcDNA=001-038-C12;Oryzabase=16286;Expression=AK061733;TENOR=Os06t0643300-01;KEGG=Os06t0643300-01
Chr06	irgsp1_rep	five_prime_UTR	26215500	26215677	.	+	.	Parent=Os06t0643300-01
Chr06	irgsp1_rep	CDS	26215678	26216295	.	+	0	Parent=Os06t0643300-01
Chr06	irgsp1_rep	three_prime_UTR	26216296	26216310	.	+	.	Parent=Os06t0643300-01
Chr06	irgsp1_rep	three_prime_UTR	26218365	26218653	.	+	.	Parent=Os06t0643300-01
Chr06	irgsp1_rep	mRNA	26215571	26218644	.	+	.	ID=Os06t0643300-02;Name=Os06t0643300-02;Locus_id=Os06g0643300;Oryzabase Gene Name Synonym(s)=development protein;Note=Development protein-like protein.;Transcript_evidence=AK104266 (DDBJ%2C Best hit),AK099061 (DDBJ%2C Best hit);ORF_evidence=A2YFI5 (UniProt);GO=Biological Process: protein transport (GO:0015031);InterPro=Snf7 (IPR005024);NIAS_FLcDNA=006-310-G07,J013155P17;Oryzabase=16286;TENOR=Os06t0643300-02
Chr06	irgsp1_rep	five_prime_UTR	26215571	26215677	.	+	.	Parent=Os06t0643300-02
Chr06	irgsp1_rep	CDS	26215678	26216295	.	+	0	Parent=Os06t0643300-02
Chr06	irgsp1_rep	three_prime_UTR	26216296	26216310	.	+	.	Parent=Os06t0643300-02
Chr06	irgsp1_rep	three_prime_UTR	26218365	26218644	.	+	.	Parent=Os06t0643300-02
Chr06	irgsp1_rep	mRNA	26227109	26228735	.	+	.	ID=Os06t0643500-01;Name=Os06t0643500-01;Locus_id=Os06g0643500;Oryzabase Gene Symbol Synonym(s)=OsHyPRP18%2C HyPRP18%2C OsHyPRP19%2C HyPRP19;Oryzabase Gene Name Synonym(s)=Hybrid Proline-Rich Protein 18%2C Hybrid Proline-Rich Protein 19;Note=Similar to ADR11 protein (Fragment).;Transcript_evidence=AK103715 (DDBJ%2C Best hit);ORF_evidence=Q96232 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=J033137N14;Oryzabase=23413;Expression=AK103715;TENOR=Os06t0643500-01;KEGG=Os06t0643500-01
Chr06	irgsp1_rep	five_prime_UTR	26227109	26227198	.	+	.	Parent=Os06t0643500-01
Chr06	irgsp1_rep	CDS	26227199	26227966	.	+	0	Parent=Os06t0643500-01
Chr06	irgsp1_rep	three_prime_UTR	26227967	26228023	.	+	.	Parent=Os06t0643500-01
Chr06	irgsp1_rep	three_prime_UTR	26228313	26228735	.	+	.	Parent=Os06t0643500-01
Chr06	irgsp1_rep	mRNA	26229857	26232824	.	-	.	ID=Os06t0643600-01;Name=Os06t0643600-01;Locus_id=Os06g0643600;Oryzabase Gene Symbol Synonym(s)=MutM;Note=DNA glycosylase/AP lyase domain containing protein.;Transcript_evidence=AK065376 (DDBJ%2C Best hit);ORF_evidence=NP_564608.1 (RefSeq);GO=Biological Process: DNA repair (GO:0006281),Biological Process: base-excision repair (GO:0006284),Biological Process: nucleotide-excision repair (GO:0006289),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: damaged DNA binding (GO:0003684),Molecular Function: DNA-(apurinic or apyrimidinic site) lyase activity (GO:0003906),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidized purine base lesion DNA N-glycosylase activity (GO:0008534),Molecular Function: hydrolase activity%2C hydrolyzing N-glycosyl compounds (GO:0016799);InterPro=DNA glycosylase/AP lyase (IPR000191),Ribosomal protein S13-like%2C H2TH (IPR010979),DNA glycosylase/AP lyase%2C catalytic domain (IPR012319),DNA glycosylase/AP lyase%2C H2TH DNA-binding (IPR015886);NIAS_FLcDNA=J013005H14;Oryzabase=21278;Expression=AK065376;TENOR=Os06t0643600-01;KEGG=Os06t0643600-01 (EC:3.2.2.23%2C EC:4.2.99.18)
Chr06	irgsp1_rep	five_prime_UTR	26232793	26232824	.	-	.	Parent=Os06t0643600-01
Chr06	irgsp1_rep	CDS	26232558	26232792	.	-	0	Parent=Os06t0643600-01
Chr06	irgsp1_rep	CDS	26232418	26232469	.	-	2	Parent=Os06t0643600-01
Chr06	irgsp1_rep	CDS	26232286	26232343	.	-	1	Parent=Os06t0643600-01
Chr06	irgsp1_rep	CDS	26231673	26231741	.	-	0	Parent=Os06t0643600-01
Chr06	irgsp1_rep	CDS	26231456	26231581	.	-	0	Parent=Os06t0643600-01
Chr06	irgsp1_rep	CDS	26231280	26231330	.	-	0	Parent=Os06t0643600-01
Chr06	irgsp1_rep	CDS	26231128	26231205	.	-	0	Parent=Os06t0643600-01
Chr06	irgsp1_rep	CDS	26230935	26231034	.	-	0	Parent=Os06t0643600-01
Chr06	irgsp1_rep	CDS	26230757	26230791	.	-	2	Parent=Os06t0643600-01
Chr06	irgsp1_rep	CDS	26230268	26230666	.	-	0	Parent=Os06t0643600-01
Chr06	irgsp1_rep	three_prime_UTR	26229857	26230267	.	-	.	Parent=Os06t0643600-01
Chr06	irgsp1_rep	mRNA	26229993	26230442	.	-	.	ID=Os06t0643600-02;Name=Os06t0643600-02;Locus_id=Os06g0643600;Oryzabase Gene Symbol Synonym(s)=MutM;Note=Hypothetical conserved gene.;Transcript_evidence=AK058461 (DDBJ%2C Best hit);ORF_evidence=B9FQ58 (UniProt);NIAS_FLcDNA=001-016-A02;Oryzabase=21278;Expression=AK058461;TENOR=Os06t0643600-02;KEGG=Os06t0643600-02 (EC:3.2.2.23%2C EC:4.2.99.18)
Chr06	irgsp1_rep	five_prime_UTR	26230442	26230442	.	-	.	Parent=Os06t0643600-02
Chr06	irgsp1_rep	CDS	26230268	26230441	.	-	0	Parent=Os06t0643600-02
Chr06	irgsp1_rep	three_prime_UTR	26229993	26230267	.	-	.	Parent=Os06t0643600-02
Chr06	irgsp1_rep	mRNA	26235069	26238193	.	-	.	ID=Os06t0643700-01;Name=Os06t0643700-01;Locus_id=Os06g0643700;Note=Hly-III related domain containing protein.;Transcript_evidence=AK242335 (DDBJ%2C Best hit);ORF_evidence=NP_197527.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Hly-III-related (IPR004254);NIAS_FLcDNA=J075199D23;TENOR=Os06t0643700-01;KEGG=Os06t0643700-01
Chr06	irgsp1_rep	five_prime_UTR	26238106	26238193	.	-	.	Parent=Os06t0643700-01
Chr06	irgsp1_rep	CDS	26237822	26238105	.	-	0	Parent=Os06t0643700-01
Chr06	irgsp1_rep	CDS	26237625	26237720	.	-	1	Parent=Os06t0643700-01
Chr06	irgsp1_rep	CDS	26237183	26237237	.	-	1	Parent=Os06t0643700-01
Chr06	irgsp1_rep	CDS	26235325	26236020	.	-	0	Parent=Os06t0643700-01
Chr06	irgsp1_rep	three_prime_UTR	26235069	26235324	.	-	.	Parent=Os06t0643700-01
Chr06	irgsp1_rep	mRNA	26235335	26237922	.	+	.	ID=Os06t0643750-00;Name=Os06t0643750-00;Locus_id=Os06g0643750;Note=Hypothetical gene.;Transcript_evidence=BT019264 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0643750-00;KEGG=Os06t0643750-00
Chr06	irgsp1_rep	five_prime_UTR	26235335	26235336	.	+	.	Parent=Os06t0643750-00
Chr06	irgsp1_rep	CDS	26235337	26236071	.	+	0	Parent=Os06t0643750-00
Chr06	irgsp1_rep	three_prime_UTR	26236072	26236120	.	+	.	Parent=Os06t0643750-00
Chr06	irgsp1_rep	three_prime_UTR	26237798	26237922	.	+	.	Parent=Os06t0643750-00
Chr06	irgsp1_rep	mRNA	26242050	26243863	.	-	.	ID=Os06t0643800-01;Name=Os06t0643800-01;Locus_id=Os06g0643800;CGSNL Gene Symbol=SPS6;CGSNL Gene Name=SUCROSE PHOSPHATE SYNTHASE 6;Oryzabase Gene Symbol Synonym(s)=OsSPS6;Oryzabase Gene Name Synonym(s)=sucrose phosphate synthase 6;Note=Similar to Sucrose-phosphate synthase 7 (EC 2.4.1.14) (Fragment).;Transcript_evidence=AK071732 (DDBJ%2C Best hit);ORF_evidence=D6BND7 (UniProt);InterPro=Sucrose-phosphate synthase (IPR006380);NIAS_FLcDNA=J023111F20;Oryzabase=11206;Expression=AK071732;TENOR=Os06t0643800-01;KEGG=Os06t0643800-01 (EC:2.4.1.14)
Chr06	irgsp1_rep	five_prime_UTR	26243863	26243863	.	-	.	Parent=Os06t0643800-01
Chr06	irgsp1_rep	CDS	26243713	26243862	.	-	0	Parent=Os06t0643800-01
Chr06	irgsp1_rep	CDS	26243417	26243544	.	-	0	Parent=Os06t0643800-01
Chr06	irgsp1_rep	CDS	26242561	26242837	.	-	1	Parent=Os06t0643800-01
Chr06	irgsp1_rep	three_prime_UTR	26242050	26242560	.	-	.	Parent=Os06t0643800-01
Chr06	irgsp1_rep	mRNA	26254217	26259239	.	-	.	ID=Os06t0643900-01;Name=Os06t0643900-01;Locus_id=Os06g0643900;RAP-DB Gene Symbol Synonym(s)=OsPAP26%2C PAP26;RAP-DB Gene Name Synonym(s)=PURPLE ACID PHOSPHATASE 26%2C purple acid phosphatase 26;CGSNL Gene Symbol=PAP26;CGSNL Gene Name=PURPLE ACID PHOSPHATASE 26;Oryzabase Gene Symbol Synonym(s)=OsPAP26;Oryzabase Gene Name Synonym(s)=purple acid phosphatase 26;Note=Purple acid phosphatase (EC:3.1.3.2)%2C Regulation of phosphate remobilization%2C Utilization of organic phosphorus;Transcript_evidence=AK061635;ORF_evidence=Q67WU6;GO=Molecular Function: acid phosphatase activity (GO:0003993),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: metal ion binding (GO:0046872);InterPro=Purple acid phosphatase-like%2C N-terminal (IPR008963),Purple acid phosphatase%2C N-terminal (IPR015914),Metallo-dependent phosphatase-like (IPR029052),Calcineurin-like phosphoesterase domain%2C ApaH type (IPR004843),Iron/zinc purple acid phosphatase-like C-terminal domain (IPR025733);NIAS_FLcDNA=001-036-A09;Manual Curation=June 2%2C 2017;Literature_PMID=28371895,21143719;Oryzabase=11394;Expression=AK061635;TENOR=Os06t0643900-01;KEGG=Os06t0643900-01;Subcellular location=apoplast (GO:0048046)
Chr06	irgsp1_rep	five_prime_UTR	26259207	26259239	.	-	.	Parent=Os06t0643900-01
Chr06	irgsp1_rep	five_prime_UTR	26258506	26258541	.	-	.	Parent=Os06t0643900-01
Chr06	irgsp1_rep	CDS	26258338	26258505	.	-	0	Parent=Os06t0643900-01
Chr06	irgsp1_rep	CDS	26258063	26258263	.	-	0	Parent=Os06t0643900-01
Chr06	irgsp1_rep	CDS	26257482	26257593	.	-	0	Parent=Os06t0643900-01
Chr06	irgsp1_rep	CDS	26256942	26257165	.	-	2	Parent=Os06t0643900-01
Chr06	irgsp1_rep	CDS	26256189	26256327	.	-	0	Parent=Os06t0643900-01
Chr06	irgsp1_rep	CDS	26255414	26255634	.	-	2	Parent=Os06t0643900-01
Chr06	irgsp1_rep	CDS	26255089	26255210	.	-	0	Parent=Os06t0643900-01
Chr06	irgsp1_rep	CDS	26254827	26254988	.	-	1	Parent=Os06t0643900-01
Chr06	irgsp1_rep	CDS	26254504	26254585	.	-	1	Parent=Os06t0643900-01
Chr06	irgsp1_rep	three_prime_UTR	26254217	26254503	.	-	.	Parent=Os06t0643900-01
Chr06	irgsp1_rep	mRNA	26263157	26266692	.	+	.	ID=Os06t0644100-01;Name=Os06t0644100-01;Locus_id=Os06g0644100;Note=Carbohydrate-binding-like fold domain containing protein.;Transcript_evidence=AK059777 (DDBJ%2C Best hit);ORF_evidence=NP_180103.2 (RefSeq);GO=Molecular Function: carboxypeptidase activity (GO:0004180),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Carbohydrate-binding-like fold (IPR013784),Carboxypeptidase%2C regulatory domain (IPR014766),Domain of unknown function DUF2012 (IPR019008);NIAS_FLcDNA=006-204-B01;Expression=AK059777;TENOR=Os06t0644100-01;KEGG=Os06t0644100-01
Chr06	irgsp1_rep	five_prime_UTR	26263157	26263238	.	+	.	Parent=Os06t0644100-01
Chr06	irgsp1_rep	CDS	26263239	26263318	.	+	0	Parent=Os06t0644100-01
Chr06	irgsp1_rep	CDS	26263423	26263466	.	+	1	Parent=Os06t0644100-01
Chr06	irgsp1_rep	CDS	26264574	26264688	.	+	2	Parent=Os06t0644100-01
Chr06	irgsp1_rep	CDS	26265024	26265087	.	+	1	Parent=Os06t0644100-01
Chr06	irgsp1_rep	CDS	26265171	26265287	.	+	0	Parent=Os06t0644100-01
Chr06	irgsp1_rep	CDS	26265382	26265490	.	+	0	Parent=Os06t0644100-01
Chr06	irgsp1_rep	CDS	26266356	26266444	.	+	2	Parent=Os06t0644100-01
Chr06	irgsp1_rep	three_prime_UTR	26266445	26266692	.	+	.	Parent=Os06t0644100-01
Chr06	irgsp1_rep	mRNA	26272898	26278664	.	+	.	ID=Os06t0644200-01;Name=Os06t0644200-01;Locus_id=Os06g0644200;RAP-DB Gene Symbol Synonym(s)=OVP1;RAP-DB Gene Name Synonym(s)=Vacuolar H<sup>+</sup>-translocating inorganic pyrophosphatase 1%2C V-PPase 1;Oryzabase Gene Symbol Synonym(s)=OVP1;Oryzabase Gene Name Synonym(s)=vacuolar H+-pyrophosphatase 1%2C V-PPase 1%2C class I V-PPase%2C vacuolar H-translocating inorganic pyrophosphatase 1;Note=Vacuolar H<sup>+</sup>-translocating inorganic pyrophosphatase (V-PPase%2C EC 3.6.1.1)%2C Cold tolerance;Transcript_evidence=AK099807;ORF_evidence=Q67WN5;GO=Biological Process: proton transmembrane transport (GO:1902600),Molecular Function: inorganic diphosphatase activity (GO:0004427),Molecular Function: pyrophosphate hydrolysis-driven proton transmembrane transporter activity (GO:0009678),Cellular Component: membrane (GO:0016020);InterPro=Pyrophosphate-energised proton pump (IPR004131);NIAS_FLcDNA=J013098H04;Manual Curation=September 29%2C 2020;Literature_PMID=20974539;Oryzabase=14467;Expression=AK099807;TENOR=Os06t0644200-01;KEGG=Os06t0644200-01 (EC:3.6.1.1)
Chr06	irgsp1_rep	five_prime_UTR	26272898	26272951	.	+	.	Parent=Os06t0644200-01
Chr06	irgsp1_rep	CDS	26272952	26273249	.	+	0	Parent=Os06t0644200-01
Chr06	irgsp1_rep	CDS	26275116	26275690	.	+	2	Parent=Os06t0644200-01
Chr06	irgsp1_rep	CDS	26275853	26276232	.	+	0	Parent=Os06t0644200-01
Chr06	irgsp1_rep	CDS	26276319	26276405	.	+	1	Parent=Os06t0644200-01
Chr06	irgsp1_rep	CDS	26276503	26276833	.	+	1	Parent=Os06t0644200-01
Chr06	irgsp1_rep	CDS	26277004	26277414	.	+	0	Parent=Os06t0644200-01
Chr06	irgsp1_rep	CDS	26277497	26277556	.	+	0	Parent=Os06t0644200-01
Chr06	irgsp1_rep	CDS	26277665	26277871	.	+	0	Parent=Os06t0644200-01
Chr06	irgsp1_rep	three_prime_UTR	26277872	26278664	.	+	.	Parent=Os06t0644200-01
Chr06	irgsp1_rep	mRNA	26272899	26273483	.	+	.	ID=Os06t0644200-02;Name=Os06t0644200-02;Locus_id=Os06g0644200;Oryzabase Gene Symbol Synonym(s)=OVP1;Oryzabase Gene Name Synonym(s)=vacuolar H+-pyrophosphatase 1%2C V-PPase 1%2C class I V-PPase%2C vacuolar H-translocating inorganic pyrophosphatase 1;Note=Similar to Vacuolar H+-pyrophosphatase.;Transcript_evidence=AK107838 (DDBJ%2C Best hit);ORF_evidence=P93409 (UniProt);NIAS_FLcDNA=002-133-H07;Oryzabase=14467;Expression=AK107838;TENOR=Os06t0644200-02;KEGG=Os06t0644200-02 (EC:3.6.1.1)
Chr06	irgsp1_rep	five_prime_UTR	26272899	26272951	.	+	.	Parent=Os06t0644200-02
Chr06	irgsp1_rep	CDS	26272952	26273323	.	+	0	Parent=Os06t0644200-02
Chr06	irgsp1_rep	three_prime_UTR	26273324	26273483	.	+	.	Parent=Os06t0644200-02
Chr06	irgsp1_rep	mRNA	26275998	26278214	.	+	.	ID=Os06t0644200-03;Name=Os06t0644200-03;Locus_id=Os06g0644200;Oryzabase Gene Symbol Synonym(s)=OVP1;Oryzabase Gene Name Synonym(s)=vacuolar H+-pyrophosphatase 1%2C V-PPase 1%2C class I V-PPase%2C vacuolar H-translocating inorganic pyrophosphatase 1;Note=Similar to Vacuolar H+-pyrophosphatase.;Transcript_evidence=AK119631 (DDBJ%2C Best hit);ORF_evidence=P93409 (UniProt);GO=Biological Process: proton transport (GO:0015992),Cellular Component: membrane (GO:0016020),Molecular Function: inorganic diphosphatase activity (GO:0004427),Molecular Function: hydrogen-translocating pyrophosphatase activity (GO:0009678);InterPro=Pyrophosphate-energised proton pump (IPR004131);NIAS_FLcDNA=002-130-E10;Oryzabase=14467;Expression=AK119631;TENOR=Os06t0644200-03;KEGG=Os06t0644200-03 (EC:3.6.1.1)
Chr06	irgsp1_rep	five_prime_UTR	26275998	26275999	.	+	.	Parent=Os06t0644200-03
Chr06	irgsp1_rep	CDS	26276000	26276232	.	+	0	Parent=Os06t0644200-03
Chr06	irgsp1_rep	CDS	26276319	26276405	.	+	1	Parent=Os06t0644200-03
Chr06	irgsp1_rep	CDS	26276503	26276833	.	+	1	Parent=Os06t0644200-03
Chr06	irgsp1_rep	CDS	26277004	26277414	.	+	0	Parent=Os06t0644200-03
Chr06	irgsp1_rep	CDS	26277497	26277556	.	+	0	Parent=Os06t0644200-03
Chr06	irgsp1_rep	CDS	26277665	26277871	.	+	0	Parent=Os06t0644200-03
Chr06	irgsp1_rep	three_prime_UTR	26277872	26278214	.	+	.	Parent=Os06t0644200-03
Chr06	irgsp1_rep	mRNA	26272978	26278265	.	-	.	ID=Os06t0644250-00;Name=Os06t0644250-00;Locus_id=Os06g0644250;Note=Hypothetical protein.;Transcript_evidence=tplb0034o06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0644250-00
Chr06	irgsp1_rep	five_prime_UTR	26277663	26278265	.	-	.	Parent=Os06t0644250-00
Chr06	irgsp1_rep	five_prime_UTR	26277479	26277554	.	-	.	Parent=Os06t0644250-00
Chr06	irgsp1_rep	five_prime_UTR	26277002	26277396	.	-	.	Parent=Os06t0644250-00
Chr06	irgsp1_rep	five_prime_UTR	26276516	26276831	.	-	.	Parent=Os06t0644250-00
Chr06	irgsp1_rep	five_prime_UTR	26276367	26276417	.	-	.	Parent=Os06t0644250-00
Chr06	irgsp1_rep	CDS	26276318	26276366	.	-	0	Parent=Os06t0644250-00
Chr06	irgsp1_rep	CDS	26275921	26276231	.	-	2	Parent=Os06t0644250-00
Chr06	irgsp1_rep	three_prime_UTR	26275853	26275920	.	-	.	Parent=Os06t0644250-00
Chr06	irgsp1_rep	three_prime_UTR	26275107	26275690	.	-	.	Parent=Os06t0644250-00
Chr06	irgsp1_rep	three_prime_UTR	26272978	26273241	.	-	.	Parent=Os06t0644250-00
Chr06	irgsp1_rep	mRNA	26280678	26281216	.	-	.	ID=Os06t0644350-00;Name=Os06t0644350-00;Locus_id=Os06g0644350;Note=Non-protein coding transcript.;Transcript_evidence=AK367245 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0644350-00
Chr06	irgsp1_rep	exon	26280678	26281216	.	-	.	Parent=Os06t0644350-00
Chr06	irgsp1_rep	mRNA	26284960	26285972	.	-	.	ID=Os06t0644400-01;Name=Os06t0644400-01;Locus_id=Os06g0644400;Note=Non-protein coding transcript.;Transcript_evidence=AK070983 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023076F07;TENOR=Os06t0644400-01
Chr06	irgsp1_rep	exon	26284960	26285972	.	-	.	Parent=Os06t0644400-01
Chr06	irgsp1_rep	mRNA	26288371	26292345	.	+	.	ID=Os06t0644466-00;Name=Os06t0644466-00;Locus_id=Os06g0644466;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q67WN0 (UniProt);TENOR=Os06t0644466-00;KEGG=Os06t0644466-00
Chr06	irgsp1_rep	CDS	26288371	26289300	.	+	0	Parent=Os06t0644466-00
Chr06	irgsp1_rep	CDS	26290708	26292345	.	+	0	Parent=Os06t0644466-00
Chr06	irgsp1_rep	mRNA	26296679	26303106	.	+	.	ID=Os06t0644500-01;Name=Os06t0644500-01;Locus_id=Os06g0644500;Note=Ankyrin domain containing protein.;Transcript_evidence=AK101292 (DDBJ%2C Best hit);ORF_evidence=NP_197535.2 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C DHHC-type%2C palmitoyltransferase (IPR001594),Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J033033G18;Expression=AK101292;TENOR=Os06t0644500-01;KEGG=Os06t0644500-01
Chr06	irgsp1_rep	five_prime_UTR	26296679	26296840	.	+	.	Parent=Os06t0644500-01
Chr06	irgsp1_rep	CDS	26296841	26297161	.	+	0	Parent=Os06t0644500-01
Chr06	irgsp1_rep	CDS	26298052	26298192	.	+	0	Parent=Os06t0644500-01
Chr06	irgsp1_rep	CDS	26298486	26298598	.	+	0	Parent=Os06t0644500-01
Chr06	irgsp1_rep	CDS	26298756	26298833	.	+	1	Parent=Os06t0644500-01
Chr06	irgsp1_rep	CDS	26298978	26299143	.	+	1	Parent=Os06t0644500-01
Chr06	irgsp1_rep	CDS	26299865	26300003	.	+	0	Parent=Os06t0644500-01
Chr06	irgsp1_rep	CDS	26300080	26300179	.	+	2	Parent=Os06t0644500-01
Chr06	irgsp1_rep	CDS	26300558	26300615	.	+	1	Parent=Os06t0644500-01
Chr06	irgsp1_rep	CDS	26300774	26300851	.	+	0	Parent=Os06t0644500-01
Chr06	irgsp1_rep	CDS	26300930	26301028	.	+	0	Parent=Os06t0644500-01
Chr06	irgsp1_rep	CDS	26301309	26301387	.	+	0	Parent=Os06t0644500-01
Chr06	irgsp1_rep	CDS	26301478	26301626	.	+	2	Parent=Os06t0644500-01
Chr06	irgsp1_rep	CDS	26302181	26302609	.	+	0	Parent=Os06t0644500-01
Chr06	irgsp1_rep	three_prime_UTR	26302610	26303106	.	+	.	Parent=Os06t0644500-01
Chr06	irgsp1_rep	mRNA	26296713	26303100	.	+	.	ID=Os06t0644500-02;Name=Os06t0644500-02;Locus_id=Os06g0644500;Note=Ankyrin domain containing protein.;Transcript_evidence=AK101919 (DDBJ%2C Best hit);ORF_evidence=NP_197535.2 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C DHHC-type%2C palmitoyltransferase (IPR001594),Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J033071J10;Expression=AK101919;TENOR=Os06t0644500-02;KEGG=Os06t0644500-02
Chr06	irgsp1_rep	five_prime_UTR	26296713	26296840	.	+	.	Parent=Os06t0644500-02
Chr06	irgsp1_rep	CDS	26296841	26297161	.	+	0	Parent=Os06t0644500-02
Chr06	irgsp1_rep	CDS	26298052	26298192	.	+	0	Parent=Os06t0644500-02
Chr06	irgsp1_rep	CDS	26298486	26298598	.	+	0	Parent=Os06t0644500-02
Chr06	irgsp1_rep	CDS	26298756	26298833	.	+	1	Parent=Os06t0644500-02
Chr06	irgsp1_rep	CDS	26298978	26299143	.	+	1	Parent=Os06t0644500-02
Chr06	irgsp1_rep	CDS	26299865	26300003	.	+	0	Parent=Os06t0644500-02
Chr06	irgsp1_rep	CDS	26300080	26300179	.	+	2	Parent=Os06t0644500-02
Chr06	irgsp1_rep	CDS	26300558	26300615	.	+	1	Parent=Os06t0644500-02
Chr06	irgsp1_rep	CDS	26300774	26300851	.	+	0	Parent=Os06t0644500-02
Chr06	irgsp1_rep	CDS	26300930	26301028	.	+	0	Parent=Os06t0644500-02
Chr06	irgsp1_rep	CDS	26301309	26301387	.	+	0	Parent=Os06t0644500-02
Chr06	irgsp1_rep	CDS	26301478	26301626	.	+	2	Parent=Os06t0644500-02
Chr06	irgsp1_rep	CDS	26302181	26302609	.	+	0	Parent=Os06t0644500-02
Chr06	irgsp1_rep	three_prime_UTR	26302610	26303100	.	+	.	Parent=Os06t0644500-02
Chr06	irgsp1_rep	mRNA	26303837	26312412	.	+	.	ID=Os06t0644600-01;Name=Os06t0644600-01;Locus_id=Os06g0644600;Oryzabase Gene Symbol Synonym(s)=OsWD40-131;Note=Similar to predicted protein.;Transcript_evidence=AK240670 (DDBJ%2C Best hit);ORF_evidence=XP_002874820.1 (RefSeq);GO=Biological Process: rRNA processing (GO:0006364),Cellular Component: small-subunit processome (GO:0032040),Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),Small-subunit processome%2C Utp21 (IPR007319),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J033119B07;Oryzabase=10812;TENOR=Os06t0644600-01;KEGG=Os06t0644600-01
Chr06	irgsp1_rep	five_prime_UTR	26303837	26303928	.	+	.	Parent=Os06t0644600-01
Chr06	irgsp1_rep	CDS	26303929	26304057	.	+	0	Parent=Os06t0644600-01
Chr06	irgsp1_rep	CDS	26304435	26304462	.	+	0	Parent=Os06t0644600-01
Chr06	irgsp1_rep	CDS	26304542	26304642	.	+	2	Parent=Os06t0644600-01
Chr06	irgsp1_rep	CDS	26305008	26305209	.	+	0	Parent=Os06t0644600-01
Chr06	irgsp1_rep	CDS	26305310	26305555	.	+	2	Parent=Os06t0644600-01
Chr06	irgsp1_rep	CDS	26305874	26306049	.	+	2	Parent=Os06t0644600-01
Chr06	irgsp1_rep	CDS	26306418	26306500	.	+	0	Parent=Os06t0644600-01
Chr06	irgsp1_rep	CDS	26306587	26306659	.	+	1	Parent=Os06t0644600-01
Chr06	irgsp1_rep	CDS	26307282	26307347	.	+	0	Parent=Os06t0644600-01
Chr06	irgsp1_rep	CDS	26307428	26307470	.	+	0	Parent=Os06t0644600-01
Chr06	irgsp1_rep	CDS	26308252	26308391	.	+	2	Parent=Os06t0644600-01
Chr06	irgsp1_rep	CDS	26308530	26308742	.	+	0	Parent=Os06t0644600-01
Chr06	irgsp1_rep	CDS	26309049	26309133	.	+	0	Parent=Os06t0644600-01
Chr06	irgsp1_rep	CDS	26309210	26309504	.	+	2	Parent=Os06t0644600-01
Chr06	irgsp1_rep	CDS	26310507	26310762	.	+	1	Parent=Os06t0644600-01
Chr06	irgsp1_rep	CDS	26310889	26311102	.	+	0	Parent=Os06t0644600-01
Chr06	irgsp1_rep	CDS	26311353	26311564	.	+	2	Parent=Os06t0644600-01
Chr06	irgsp1_rep	CDS	26311706	26311855	.	+	0	Parent=Os06t0644600-01
Chr06	irgsp1_rep	three_prime_UTR	26311856	26311861	.	+	.	Parent=Os06t0644600-01
Chr06	irgsp1_rep	three_prime_UTR	26312089	26312412	.	+	.	Parent=Os06t0644600-01
Chr06	irgsp1_rep	mRNA	26312771	26315057	.	-	.	ID=Os06t0644700-01;Name=Os06t0644700-01;Locus_id=Os06g0644700;Oryzabase Gene Symbol Synonym(s)=OsATL1;Oryzabase Gene Name Synonym(s)=amino acid transporter-like 1;Note=Amino acid transporter%2C transmembrane domain containing protein.;Transcript_evidence=AK070101 (DDBJ%2C Best hit);ORF_evidence=B6SWN7 (UniProt);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=J023044I16;Oryzabase=18519;Expression=AK070101;TENOR=Os06t0644700-01;KEGG=Os06t0644700-01
Chr06	irgsp1_rep	five_prime_UTR	26314546	26315057	.	-	.	Parent=Os06t0644700-01
Chr06	irgsp1_rep	CDS	26314406	26314545	.	-	0	Parent=Os06t0644700-01
Chr06	irgsp1_rep	CDS	26313085	26314378	.	-	1	Parent=Os06t0644700-01
Chr06	irgsp1_rep	three_prime_UTR	26312771	26313084	.	-	.	Parent=Os06t0644700-01
Chr06	irgsp1_rep	mRNA	26316308	26318954	.	-	.	ID=Os06t0644800-01;Name=Os06t0644800-01;Locus_id=Os06g0644800;Oryzabase Gene Symbol Synonym(s)=OsOS-9%2C OS-9%2C OS9;Oryzabase Gene Name Synonym(s)=a homologue of yeast Yos-9p;Note=Glucosidase II beta subunit-like domain containing protein.;Transcript_evidence=AK109442 (DDBJ%2C Best hit);ORF_evidence=B6TGZ7 (UniProt);InterPro=Mannose-6-phosphate receptor%2C binding (IPR009011),Glucosidase II beta subunit-like (IPR012913);NIAS_FLcDNA=006-311-H04;Oryzabase=19803;Expression=AK109442;TENOR=Os06t0644800-01;KEGG=Os06t0644800-01
Chr06	irgsp1_rep	five_prime_UTR	26318883	26318954	.	-	.	Parent=Os06t0644800-01
Chr06	irgsp1_rep	CDS	26318783	26318882	.	-	0	Parent=Os06t0644800-01
Chr06	irgsp1_rep	CDS	26318304	26318380	.	-	2	Parent=Os06t0644800-01
Chr06	irgsp1_rep	CDS	26317707	26317907	.	-	0	Parent=Os06t0644800-01
Chr06	irgsp1_rep	CDS	26317525	26317596	.	-	0	Parent=Os06t0644800-01
Chr06	irgsp1_rep	CDS	26317161	26317276	.	-	0	Parent=Os06t0644800-01
Chr06	irgsp1_rep	CDS	26317008	26317074	.	-	1	Parent=Os06t0644800-01
Chr06	irgsp1_rep	CDS	26316822	26316928	.	-	0	Parent=Os06t0644800-01
Chr06	irgsp1_rep	CDS	26316586	26316742	.	-	1	Parent=Os06t0644800-01
Chr06	irgsp1_rep	three_prime_UTR	26316308	26316585	.	-	.	Parent=Os06t0644800-01
Chr06	irgsp1_rep	mRNA	26316039	26318921	.	-	.	ID=Os06t0644800-02;Name=Os06t0644800-02;Locus_id=Os06g0644800;Oryzabase Gene Symbol Synonym(s)=OsOS-9%2C OS-9%2C OS9;Oryzabase Gene Name Synonym(s)=a homologue of yeast Yos-9p;Note=Similar to Protein OS-9.;Transcript_evidence=AK105643 (DDBJ%2C Best hit);ORF_evidence=B6TGZ7 (UniProt);InterPro=Glucosidase II beta subunit-like (IPR012913);NIAS_FLcDNA=001-200-F03;Oryzabase=19803;TENOR=Os06t0644800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	26318883	26318921	.	-	.	Parent=Os06t0644800-02
Chr06	irgsp1_rep	CDS	26318783	26318882	.	-	0	Parent=Os06t0644800-02
Chr06	irgsp1_rep	CDS	26318304	26318380	.	-	2	Parent=Os06t0644800-02
Chr06	irgsp1_rep	CDS	26317707	26317907	.	-	0	Parent=Os06t0644800-02
Chr06	irgsp1_rep	CDS	26317450	26317596	.	-	0	Parent=Os06t0644800-02
Chr06	irgsp1_rep	three_prime_UTR	26317161	26317449	.	-	.	Parent=Os06t0644800-02
Chr06	irgsp1_rep	three_prime_UTR	26317008	26317074	.	-	.	Parent=Os06t0644800-02
Chr06	irgsp1_rep	three_prime_UTR	26316822	26316928	.	-	.	Parent=Os06t0644800-02
Chr06	irgsp1_rep	three_prime_UTR	26316039	26316742	.	-	.	Parent=Os06t0644800-02
Chr06	irgsp1_rep	mRNA	26322828	26324093	.	-	.	ID=Os06t0645100-00;Name=Os06t0645100-00;Locus_id=Os06g0645100;Oryzabase Gene Symbol Synonym(s)=OsFbox318%2C Os_F0416;Oryzabase Gene Name Synonym(s)=F-box protein 318;Note=Similar to F-box domain containing protein.;Transcript_evidence=EU962397 (DDBJ);ORF_evidence=NP_001149196.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17096;TENOR=Os06t0645100-00
Chr06	irgsp1_rep	CDS	26322828	26324093	.	-	0	Parent=Os06t0645100-00
Chr06	irgsp1_rep	mRNA	26332888	26345250	.	+	.	ID=Os06t0645400-01;Name=Os06t0645400-01;Locus_id=Os06g0645400;Note=Similar to Isoleucine-tRNA ligase-like protein.;Transcript_evidence=AK101482 (DDBJ%2C Best hit);ORF_evidence=Q9SV89 (UniProt);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: isoleucyl-tRNA aminoacylation (GO:0006428),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: isoleucine-tRNA ligase activity (GO:0004822),Molecular Function: ATP binding (GO:0005524);InterPro=Aminoacyl-tRNA synthetase%2C class I%2C conserved site (IPR001412),Aminoacyl-tRNA synthetase%2C class Ia (IPR002300),Isoleucyl-tRNA synthetase (IPR002301),Valyl/Leucyl/Isoleucyl-tRNA synthetase%2C class Ia%2C editing domain (IPR009008),Aminoacyl-tRNA synthetase%2C class 1a%2C anticodon-binding (IPR009080),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J033041F01;TENOR=Os06t0645400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	26332888	26333104	.	+	.	Parent=Os06t0645400-01
Chr06	irgsp1_rep	CDS	26333105	26333638	.	+	0	Parent=Os06t0645400-01
Chr06	irgsp1_rep	CDS	26334032	26334097	.	+	0	Parent=Os06t0645400-01
Chr06	irgsp1_rep	CDS	26334178	26334321	.	+	0	Parent=Os06t0645400-01
Chr06	irgsp1_rep	CDS	26335068	26335264	.	+	0	Parent=Os06t0645400-01
Chr06	irgsp1_rep	CDS	26335933	26336095	.	+	1	Parent=Os06t0645400-01
Chr06	irgsp1_rep	CDS	26336412	26336525	.	+	0	Parent=Os06t0645400-01
Chr06	irgsp1_rep	CDS	26336956	26337053	.	+	0	Parent=Os06t0645400-01
Chr06	irgsp1_rep	CDS	26337616	26337694	.	+	1	Parent=Os06t0645400-01
Chr06	irgsp1_rep	CDS	26338008	26338166	.	+	0	Parent=Os06t0645400-01
Chr06	irgsp1_rep	CDS	26338342	26338431	.	+	0	Parent=Os06t0645400-01
Chr06	irgsp1_rep	CDS	26339442	26339575	.	+	0	Parent=Os06t0645400-01
Chr06	irgsp1_rep	CDS	26340165	26340324	.	+	1	Parent=Os06t0645400-01
Chr06	irgsp1_rep	CDS	26340478	26340561	.	+	0	Parent=Os06t0645400-01
Chr06	irgsp1_rep	CDS	26340652	26340864	.	+	0	Parent=Os06t0645400-01
Chr06	irgsp1_rep	CDS	26340973	26341287	.	+	0	Parent=Os06t0645400-01
Chr06	irgsp1_rep	three_prime_UTR	26341288	26341877	.	+	.	Parent=Os06t0645400-01
Chr06	irgsp1_rep	three_prime_UTR	26341963	26342066	.	+	.	Parent=Os06t0645400-01
Chr06	irgsp1_rep	three_prime_UTR	26342484	26342547	.	+	.	Parent=Os06t0645400-01
Chr06	irgsp1_rep	three_prime_UTR	26342881	26342969	.	+	.	Parent=Os06t0645400-01
Chr06	irgsp1_rep	three_prime_UTR	26343045	26343186	.	+	.	Parent=Os06t0645400-01
Chr06	irgsp1_rep	three_prime_UTR	26343589	26343652	.	+	.	Parent=Os06t0645400-01
Chr06	irgsp1_rep	three_prime_UTR	26343737	26343804	.	+	.	Parent=Os06t0645400-01
Chr06	irgsp1_rep	three_prime_UTR	26344051	26344173	.	+	.	Parent=Os06t0645400-01
Chr06	irgsp1_rep	three_prime_UTR	26344256	26344321	.	+	.	Parent=Os06t0645400-01
Chr06	irgsp1_rep	three_prime_UTR	26344509	26344614	.	+	.	Parent=Os06t0645400-01
Chr06	irgsp1_rep	three_prime_UTR	26344728	26344819	.	+	.	Parent=Os06t0645400-01
Chr06	irgsp1_rep	three_prime_UTR	26344895	26345250	.	+	.	Parent=Os06t0645400-01
Chr06	irgsp1_rep	mRNA	26343102	26345250	.	+	.	ID=Os06t0645400-02;Name=Os06t0645400-02;Locus_id=Os06g0645400;Note=Similar to ATP binding protein (Fragment).;Transcript_evidence=AK105391 (DDBJ%2C Best hit);ORF_evidence=A6N078 (UniProt);NIAS_FLcDNA=001-122-H06;Expression=AK105391;TENOR=Os06t0645400-02;KEGG=Os06t0645400-02 (EC:6.1.1.5)
Chr06	irgsp1_rep	five_prime_UTR	26343102	26343102	.	+	.	Parent=Os06t0645400-02
Chr06	irgsp1_rep	CDS	26343103	26343186	.	+	0	Parent=Os06t0645400-02
Chr06	irgsp1_rep	CDS	26343589	26343652	.	+	0	Parent=Os06t0645400-02
Chr06	irgsp1_rep	CDS	26343737	26343804	.	+	2	Parent=Os06t0645400-02
Chr06	irgsp1_rep	CDS	26344051	26344173	.	+	0	Parent=Os06t0645400-02
Chr06	irgsp1_rep	CDS	26344256	26344321	.	+	0	Parent=Os06t0645400-02
Chr06	irgsp1_rep	CDS	26344509	26344614	.	+	0	Parent=Os06t0645400-02
Chr06	irgsp1_rep	CDS	26344728	26344819	.	+	2	Parent=Os06t0645400-02
Chr06	irgsp1_rep	CDS	26344895	26344996	.	+	0	Parent=Os06t0645400-02
Chr06	irgsp1_rep	three_prime_UTR	26344997	26345250	.	+	.	Parent=Os06t0645400-02
Chr06	irgsp1_rep	mRNA	26346136	26347098	.	-	.	ID=Os06t0645500-01;Name=Os06t0645500-01;Locus_id=Os06g0645500;Note=Sterile alpha motif homology domain containing protein.;Transcript_evidence=AK109234 (DDBJ%2C Best hit);ORF_evidence=A2YFK5 (UniProt);InterPro=Sterile alpha motif/pointed domain (IPR013761);NIAS_FLcDNA=002-156-F06;Expression=AK109234;TENOR=Os06t0645500-01;KEGG=Os06t0645500-01
Chr06	irgsp1_rep	five_prime_UTR	26347025	26347098	.	-	.	Parent=Os06t0645500-01
Chr06	irgsp1_rep	CDS	26346308	26347024	.	-	0	Parent=Os06t0645500-01
Chr06	irgsp1_rep	three_prime_UTR	26346136	26346307	.	-	.	Parent=Os06t0645500-01
Chr06	irgsp1_rep	mRNA	26355715	26358802	.	-	.	ID=Os06t0645600-00;Name=Os06t0645600-00;Locus_id=Os06g0645600;Note=Hypothetical conserved gene.;Transcript_evidence=BT085127 (DDBJ);ORF_evidence=NP_001058193.1 (RefSeq);TENOR=Os06t0645600-00;KEGG=Os06t0645600-00
Chr06	irgsp1_rep	CDS	26358638	26358802	.	-	0	Parent=Os06t0645600-00
Chr06	irgsp1_rep	CDS	26358305	26358507	.	-	0	Parent=Os06t0645600-00
Chr06	irgsp1_rep	CDS	26357663	26357947	.	-	1	Parent=Os06t0645600-00
Chr06	irgsp1_rep	CDS	26357504	26357562	.	-	1	Parent=Os06t0645600-00
Chr06	irgsp1_rep	CDS	26357363	26357399	.	-	2	Parent=Os06t0645600-00
Chr06	irgsp1_rep	CDS	26357201	26357272	.	-	1	Parent=Os06t0645600-00
Chr06	irgsp1_rep	CDS	26355715	26356492	.	-	1	Parent=Os06t0645600-00
Chr06	irgsp1_rep	mRNA	26355728	26358771	.	+	.	ID=Os06t0645650-00;Name=Os06t0645650-00;Locus_id=Os06g0645650;Note=Hypothetical protein.;Transcript_evidence=tplb0048p04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0645650-00
Chr06	irgsp1_rep	five_prime_UTR	26355728	26356479	.	+	.	Parent=Os06t0645650-00
Chr06	irgsp1_rep	five_prime_UTR	26357187	26357289	.	+	.	Parent=Os06t0645650-00
Chr06	irgsp1_rep	five_prime_UTR	26357590	26357631	.	+	.	Parent=Os06t0645650-00
Chr06	irgsp1_rep	CDS	26357632	26357948	.	+	0	Parent=Os06t0645650-00
Chr06	irgsp1_rep	CDS	26358307	26358367	.	+	1	Parent=Os06t0645650-00
Chr06	irgsp1_rep	three_prime_UTR	26358368	26358507	.	+	.	Parent=Os06t0645650-00
Chr06	irgsp1_rep	three_prime_UTR	26358638	26358771	.	+	.	Parent=Os06t0645650-00
Chr06	irgsp1_rep	mRNA	26359694	26360497	.	-	.	ID=Os06t0645700-01;Name=Os06t0645700-01;Locus_id=Os06g0645700;CGSNL Gene Symbol=HAF701;CGSNL Gene Name=HISTONE ACETYLTRANSFERASE HAF701;Oryzabase Gene Symbol Synonym(s)=OsHAF701;Oryzabase Gene Name Synonym(s)=Histone acetyltransferase HAF701;Note=Similar to HAF1.;Transcript_evidence=AK108404 (DDBJ%2C Best hit);ORF_evidence=Q67W65 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Bromodomain (IPR001487);NIAS_FLcDNA=002-142-G07;Oryzabase=11170;Expression=AK108404;TENOR=Os06t0645700-01;KEGG=Os06t0645700-01
Chr06	irgsp1_rep	five_prime_UTR	26360497	26360497	.	-	.	Parent=Os06t0645700-01
Chr06	irgsp1_rep	CDS	26360281	26360496	.	-	0	Parent=Os06t0645700-01
Chr06	irgsp1_rep	three_prime_UTR	26359694	26360280	.	-	.	Parent=Os06t0645700-01
Chr06	irgsp1_rep	mRNA	26361294	26367555	.	-	.	ID=Os06t0645800-01;Name=Os06t0645800-01;Locus_id=Os06g0645800;Note=Similar to Transcription initiation factor TFIID subunit 1.;Transcript_evidence=AK064421 (DDBJ%2C Best hit);ORF_evidence=Q67W65 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Transcription initiation factor TFIID subunit 1%2C domain of unknown function (IPR022591);NIAS_FLcDNA=002-110-B10;Expression=AK064421;TENOR=Os06t0645800-01;KEGG=Os06t0645800-01
Chr06	irgsp1_rep	five_prime_UTR	26367555	26367555	.	-	.	Parent=Os06t0645800-01
Chr06	irgsp1_rep	CDS	26367243	26367554	.	-	0	Parent=Os06t0645800-01
Chr06	irgsp1_rep	CDS	26366049	26366255	.	-	0	Parent=Os06t0645800-01
Chr06	irgsp1_rep	CDS	26365831	26365923	.	-	0	Parent=Os06t0645800-01
Chr06	irgsp1_rep	CDS	26365323	26365529	.	-	0	Parent=Os06t0645800-01
Chr06	irgsp1_rep	CDS	26364193	26364396	.	-	0	Parent=Os06t0645800-01
Chr06	irgsp1_rep	CDS	26363276	26363759	.	-	0	Parent=Os06t0645800-01
Chr06	irgsp1_rep	CDS	26363009	26363184	.	-	2	Parent=Os06t0645800-01
Chr06	irgsp1_rep	CDS	26362787	26362906	.	-	0	Parent=Os06t0645800-01
Chr06	irgsp1_rep	CDS	26362164	26362217	.	-	0	Parent=Os06t0645800-01
Chr06	irgsp1_rep	CDS	26361294	26362076	.	-	0	Parent=Os06t0645800-01
Chr06	irgsp1_rep	mRNA	26369197	26370216	.	-	.	ID=Os06t0645901-00;Name=Os06t0645901-00;Locus_id=Os06g0645901;Note=Similar to Transcription initiation factor TFIID subunit 1.;Transcript_evidence=BT037416 (DDBJ);ORF_evidence=Q67W65 (UniProt);TENOR=Os06t0645901-00;KEGG=Os06t0645901-00
Chr06	irgsp1_rep	CDS	26369197	26370216	.	-	0	Parent=Os06t0645901-00
Chr06	irgsp1_rep	mRNA	26376114	26379069	.	-	.	ID=Os06t0646000-01;Name=Os06t0646000-01;Locus_id=Os06g0646000;Note=Methyltransferase type 11 domain containing protein.;Transcript_evidence=AK068674 (DDBJ%2C Best hit);ORF_evidence=B6SRT6 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Methyltransferase type 11 (IPR013216);NIAS_FLcDNA=J013159P17;Expression=AK068674;TENOR=Os06t0646000-01;KEGG=Os06t0646000-01
Chr06	irgsp1_rep	five_prime_UTR	26378990	26379069	.	-	.	Parent=Os06t0646000-01
Chr06	irgsp1_rep	CDS	26378834	26378989	.	-	0	Parent=Os06t0646000-01
Chr06	irgsp1_rep	CDS	26378035	26378135	.	-	0	Parent=Os06t0646000-01
Chr06	irgsp1_rep	CDS	26377727	26377949	.	-	1	Parent=Os06t0646000-01
Chr06	irgsp1_rep	CDS	26377338	26377531	.	-	0	Parent=Os06t0646000-01
Chr06	irgsp1_rep	CDS	26376851	26376962	.	-	1	Parent=Os06t0646000-01
Chr06	irgsp1_rep	CDS	26376572	26376685	.	-	0	Parent=Os06t0646000-01
Chr06	irgsp1_rep	CDS	26376351	26376488	.	-	0	Parent=Os06t0646000-01
Chr06	irgsp1_rep	three_prime_UTR	26376114	26376350	.	-	.	Parent=Os06t0646000-01
Chr06	irgsp1_rep	mRNA	26376136	26379039	.	-	.	ID=Os06t0646000-02;Name=Os06t0646000-02;Locus_id=Os06g0646000;Note=Methyltransferase type 11 domain containing protein.;Transcript_evidence=AK104339 (DDBJ%2C Best hit);ORF_evidence=B6SRT6 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Methyltransferase type 11 (IPR013216);NIAS_FLcDNA=001-033-F09;Expression=AK104339;TENOR=Os06t0646000-02;KEGG=Os06t0646000-02
Chr06	irgsp1_rep	five_prime_UTR	26378990	26379039	.	-	.	Parent=Os06t0646000-02
Chr06	irgsp1_rep	CDS	26378834	26378989	.	-	0	Parent=Os06t0646000-02
Chr06	irgsp1_rep	CDS	26378035	26378135	.	-	0	Parent=Os06t0646000-02
Chr06	irgsp1_rep	CDS	26377727	26377949	.	-	1	Parent=Os06t0646000-02
Chr06	irgsp1_rep	CDS	26377338	26377531	.	-	0	Parent=Os06t0646000-02
Chr06	irgsp1_rep	CDS	26376851	26376962	.	-	1	Parent=Os06t0646000-02
Chr06	irgsp1_rep	CDS	26376572	26376685	.	-	0	Parent=Os06t0646000-02
Chr06	irgsp1_rep	CDS	26376351	26376488	.	-	0	Parent=Os06t0646000-02
Chr06	irgsp1_rep	three_prime_UTR	26376136	26376350	.	-	.	Parent=Os06t0646000-02
Chr06	irgsp1_rep	mRNA	26384994	26385658	.	+	.	ID=Os06t0646100-01;Name=Os06t0646100-01;Locus_id=Os06g0646100;Note=Conserved hypothetical protein.;Transcript_evidence=AK062869 (DDBJ%2C Best hit);ORF_evidence=A2YFL1 (UniProt);NIAS_FLcDNA=001-108-C03;Expression=AK062869;TENOR=Os06t0646100-01;KEGG=Os06t0646100-01
Chr06	irgsp1_rep	five_prime_UTR	26384994	26385081	.	+	.	Parent=Os06t0646100-01
Chr06	irgsp1_rep	CDS	26385082	26385390	.	+	0	Parent=Os06t0646100-01
Chr06	irgsp1_rep	three_prime_UTR	26385391	26385658	.	+	.	Parent=Os06t0646100-01
Chr06	irgsp1_rep	mRNA	26399276	26405213	.	+	.	ID=Os06t0646400-01;Name=Os06t0646400-01;Locus_id=Os06g0646400;Note=Tyrosine protein kinase domain containing protein.;Transcript_evidence=AK243413 (DDBJ%2C Best hit);ORF_evidence=B9FQ73 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Phox/Bem1p (IPR000270),Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J100065P17;TENOR=Os06t0646400-01;KEGG=Os06t0646400-01
Chr06	irgsp1_rep	five_prime_UTR	26399276	26399607	.	+	.	Parent=Os06t0646400-01
Chr06	irgsp1_rep	CDS	26399608	26401882	.	+	0	Parent=Os06t0646400-01
Chr06	irgsp1_rep	CDS	26401975	26402123	.	+	2	Parent=Os06t0646400-01
Chr06	irgsp1_rep	CDS	26402202	26402270	.	+	0	Parent=Os06t0646400-01
Chr06	irgsp1_rep	CDS	26402353	26402505	.	+	0	Parent=Os06t0646400-01
Chr06	irgsp1_rep	CDS	26402579	26402742	.	+	0	Parent=Os06t0646400-01
Chr06	irgsp1_rep	CDS	26402859	26403006	.	+	1	Parent=Os06t0646400-01
Chr06	irgsp1_rep	CDS	26404000	26404122	.	+	0	Parent=Os06t0646400-01
Chr06	irgsp1_rep	CDS	26404212	26404299	.	+	0	Parent=Os06t0646400-01
Chr06	irgsp1_rep	CDS	26404433	26404602	.	+	2	Parent=Os06t0646400-01
Chr06	irgsp1_rep	three_prime_UTR	26404603	26405213	.	+	.	Parent=Os06t0646400-01
Chr06	irgsp1_rep	mRNA	26408102	26410839	.	+	.	ID=Os06t0646500-01;Name=Os06t0646500-01;Locus_id=Os06g0646500;Oryzabase Gene Name Synonym(s)=ATP synthase delta chain;Note=Similar to ATP synthase delta chain%2C mitochondrial precursor (EC 3.6.3.14) (Oligomycin sensitivity conferral protein) (OSCP).;Transcript_evidence=AK071267 (DDBJ%2C Best hit);ORF_evidence=B6TBW2 (UniProt);GO=Biological Process: ATP synthesis coupled proton transport (GO:0015986),Cellular Component: plasma membrane (GO:0005886),Molecular Function: hydrogen ion transporting ATP synthase activity%2C rotational mechanism (GO:0046933);InterPro=ATPase%2C F1 complex%2C OSCP/delta subunit (IPR000711),ATPase%2C F1 complex%2C OSCP/delta subunit%2C conserved site (IPR020781);NIAS_FLcDNA=J023086I22;Oryzabase=16022;Expression=AK071267;TENOR=Os06t0646500-01;KEGG=Os06t0646500-01 (EC:3.6.3.14)
Chr06	irgsp1_rep	five_prime_UTR	26408102	26408240	.	+	.	Parent=Os06t0646500-01
Chr06	irgsp1_rep	CDS	26408241	26408297	.	+	0	Parent=Os06t0646500-01
Chr06	irgsp1_rep	CDS	26408552	26408608	.	+	0	Parent=Os06t0646500-01
Chr06	irgsp1_rep	CDS	26409116	26409359	.	+	0	Parent=Os06t0646500-01
Chr06	irgsp1_rep	CDS	26409778	26409890	.	+	2	Parent=Os06t0646500-01
Chr06	irgsp1_rep	CDS	26410327	26410413	.	+	0	Parent=Os06t0646500-01
Chr06	irgsp1_rep	CDS	26410495	26410614	.	+	0	Parent=Os06t0646500-01
Chr06	irgsp1_rep	three_prime_UTR	26410615	26410839	.	+	.	Parent=Os06t0646500-01
Chr06	irgsp1_rep	mRNA	26411491	26414775	.	-	.	ID=Os06t0646600-01;Name=Os06t0646600-01;Locus_id=Os06g0646600;CGSNL Gene Symbol=HOS59;CGSNL Gene Name=HOMEOBOX ORYZA SATIVA59;Oryzabase Gene Name Synonym(s)=Homeobox protein knotted-1-like 11%2C Homeobox protein HOS59;Note=Similar to Homeobox protein knotted-1-like 11.;Transcript_evidence=AK241438 (DDBJ%2C Best hit);ORF_evidence=Q94LW4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),ELK (IPR005539),KNOX1 (IPR005540),KNOX2 (IPR005541),Homeobox KN domain (IPR008422),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);NIAS_FLcDNA=J065162G03;Oryzabase=8707;TENOR=Os06t0646600-01;KEGG=Os06t0646600-01
Chr06	irgsp1_rep	five_prime_UTR	26414733	26414775	.	-	.	Parent=Os06t0646600-01
Chr06	irgsp1_rep	CDS	26414382	26414732	.	-	0	Parent=Os06t0646600-01
Chr06	irgsp1_rep	CDS	26413206	26413326	.	-	0	Parent=Os06t0646600-01
Chr06	irgsp1_rep	CDS	26412553	26412743	.	-	2	Parent=Os06t0646600-01
Chr06	irgsp1_rep	CDS	26412347	26412478	.	-	0	Parent=Os06t0646600-01
Chr06	irgsp1_rep	CDS	26412126	26412262	.	-	0	Parent=Os06t0646600-01
Chr06	irgsp1_rep	CDS	26411997	26412036	.	-	1	Parent=Os06t0646600-01
Chr06	irgsp1_rep	three_prime_UTR	26411491	26411996	.	-	.	Parent=Os06t0646600-01
Chr06	irgsp1_rep	mRNA	26411544	26414775	.	-	.	ID=Os06t0646600-02;Name=Os06t0646600-02;Locus_id=Os06g0646600;CGSNL Gene Symbol=HOS59;CGSNL Gene Name=HOMEOBOX ORYZA SATIVA59;Oryzabase Gene Name Synonym(s)=Homeobox protein knotted-1-like 11%2C Homeobox protein HOS59;Note=Similar to cDNA%2C clone: J065162G03%2C full insert sequence.;Transcript_evidence=AK289177 (DDBJ%2C Best hit);ORF_evidence=B7F8T4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),ELK (IPR005539),KNOX1 (IPR005540),KNOX2 (IPR005541),Homeobox KN domain (IPR008422),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);NIAS_FLcDNA=J100024E07;Oryzabase=8707;TENOR=Os06t0646600-02;KEGG=Os06t0646600-02
Chr06	irgsp1_rep	five_prime_UTR	26414733	26414775	.	-	.	Parent=Os06t0646600-02
Chr06	irgsp1_rep	CDS	26414382	26414732	.	-	0	Parent=Os06t0646600-02
Chr06	irgsp1_rep	CDS	26413206	26413326	.	-	0	Parent=Os06t0646600-02
Chr06	irgsp1_rep	CDS	26412553	26412743	.	-	2	Parent=Os06t0646600-02
Chr06	irgsp1_rep	CDS	26412347	26412478	.	-	0	Parent=Os06t0646600-02
Chr06	irgsp1_rep	CDS	26412126	26412262	.	-	0	Parent=Os06t0646600-02
Chr06	irgsp1_rep	CDS	26412022	26412025	.	-	1	Parent=Os06t0646600-02
Chr06	irgsp1_rep	three_prime_UTR	26411544	26412021	.	-	.	Parent=Os06t0646600-02
Chr06	irgsp1_rep	mRNA	26421563	26427830	.	-	.	ID=Os06t0646700-01;Name=Os06t0646700-01;Locus_id=Os06g0646700;CGSNL Gene Symbol=DLN169;CGSNL Gene Name=DLN REPRESSOR 169;Oryzabase Gene Symbol Synonym(s)=OsDLN169;Oryzabase Gene Name Synonym(s)=DLN repressor 169%2C DLN motif protein 169;Note=Conserved hypothetical protein.;Transcript_evidence=AK065143 (DDBJ%2C Best hit);ORF_evidence=B9FQ75 (UniProt);NIAS_FLcDNA=J013002A19;Oryzabase=23210;Expression=AK065143;TENOR=Os06t0646700-01;KEGG=Os06t0646700-01
Chr06	irgsp1_rep	five_prime_UTR	26427650	26427830	.	-	.	Parent=Os06t0646700-01
Chr06	irgsp1_rep	CDS	26427344	26427649	.	-	0	Parent=Os06t0646700-01
Chr06	irgsp1_rep	CDS	26422151	26422174	.	-	0	Parent=Os06t0646700-01
Chr06	irgsp1_rep	three_prime_UTR	26421563	26422150	.	-	.	Parent=Os06t0646700-01
Chr06	irgsp1_rep	mRNA	26433253	26434294	.	-	.	ID=Os06t0646801-01;Name=Os06t0646801-01;Locus_id=Os06g0646801;Note=Hypothetical conserved gene.;Transcript_evidence=AK287534 (DDBJ%2C Best hit);ORF_evidence=B9FQ76 (UniProt);NIAS_FLcDNA=J065003M09;TENOR=Os06t0646801-01;KEGG=Os06t0646801-01
Chr06	irgsp1_rep	five_prime_UTR	26434050	26434294	.	-	.	Parent=Os06t0646801-01
Chr06	irgsp1_rep	CDS	26433447	26434049	.	-	0	Parent=Os06t0646801-01
Chr06	irgsp1_rep	three_prime_UTR	26433253	26433446	.	-	.	Parent=Os06t0646801-01
Chr06	irgsp1_rep	mRNA	26435460	26439235	.	-	.	ID=Os06t0646900-01;Name=Os06t0646900-01;Locus_id=Os06g0646900;Oryzabase Gene Symbol Synonym(s)=OsHGGT%2C HGGT%2C OsHST;Oryzabase Gene Name Synonym(s)=homogentisic acid geranylgeranyl transferase%2C homogentisic acid solanesyl transferase;Note=Similar to Homogentisic acid geranylgeranyl transferase.;Transcript_evidence=AK063383 (DDBJ%2C Best hit);ORF_evidence=Q7XB12 (UniProt);NIAS_FLcDNA=001-114-G04;Oryzabase=11210;TENOR=Os06t0646900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	26439098	26439235	.	-	.	Parent=Os06t0646900-01
Chr06	irgsp1_rep	CDS	26439013	26439097	.	-	0	Parent=Os06t0646900-01
Chr06	irgsp1_rep	CDS	26438844	26438900	.	-	2	Parent=Os06t0646900-01
Chr06	irgsp1_rep	CDS	26437941	26437983	.	-	2	Parent=Os06t0646900-01
Chr06	irgsp1_rep	CDS	26437664	26437847	.	-	1	Parent=Os06t0646900-01
Chr06	irgsp1_rep	CDS	26437546	26437575	.	-	0	Parent=Os06t0646900-01
Chr06	irgsp1_rep	three_prime_UTR	26437499	26437545	.	-	.	Parent=Os06t0646900-01
Chr06	irgsp1_rep	three_prime_UTR	26437275	26437349	.	-	.	Parent=Os06t0646900-01
Chr06	irgsp1_rep	three_prime_UTR	26437104	26437187	.	-	.	Parent=Os06t0646900-01
Chr06	irgsp1_rep	three_prime_UTR	26436910	26436999	.	-	.	Parent=Os06t0646900-01
Chr06	irgsp1_rep	three_prime_UTR	26436706	26436807	.	-	.	Parent=Os06t0646900-01
Chr06	irgsp1_rep	three_prime_UTR	26436531	26436626	.	-	.	Parent=Os06t0646900-01
Chr06	irgsp1_rep	three_prime_UTR	26436338	26436409	.	-	.	Parent=Os06t0646900-01
Chr06	irgsp1_rep	three_prime_UTR	26436141	26436236	.	-	.	Parent=Os06t0646900-01
Chr06	irgsp1_rep	three_prime_UTR	26435925	26436029	.	-	.	Parent=Os06t0646900-01
Chr06	irgsp1_rep	three_prime_UTR	26435460	26435828	.	-	.	Parent=Os06t0646900-01
Chr06	irgsp1_rep	mRNA	26441780	26442058	.	+	.	ID=Os06t0647000-00;Name=Os06t0647000-00;Locus_id=Os06g0647000;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os06t0647000-00
Chr06	irgsp1_rep	CDS	26441780	26442058	.	+	0	Parent=Os06t0647000-00
Chr06	irgsp1_rep	mRNA	26442731	26444814	.	+	.	ID=Os06t0647100-01;Name=Os06t0647100-01;Locus_id=Os06g0647100;Note=Similar to 50S ribosomal protein L35%2C chloroplast precursor (CL35).;Transcript_evidence=AK066837 (DDBJ%2C Best hit);ORF_evidence=A2YFL7 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L35%2C non-mitochondrial (IPR001706),Ribosomal protein L35%2C conserved site (IPR018265),Ribosomal protein L35 (IPR021137);NIAS_FLcDNA=J013083N03;Expression=AK066837;TENOR=Os06t0647100-01;KEGG=Os06t0647100-01
Chr06	irgsp1_rep	five_prime_UTR	26442731	26442772	.	+	.	Parent=Os06t0647100-01
Chr06	irgsp1_rep	CDS	26442773	26443018	.	+	0	Parent=Os06t0647100-01
Chr06	irgsp1_rep	CDS	26443102	26443218	.	+	0	Parent=Os06t0647100-01
Chr06	irgsp1_rep	CDS	26444495	26444572	.	+	0	Parent=Os06t0647100-01
Chr06	irgsp1_rep	three_prime_UTR	26444573	26444814	.	+	.	Parent=Os06t0647100-01
Chr06	irgsp1_rep	mRNA	26450752	26454632	.	-	.	ID=Os06t0647150-00;Name=Os06t0647150-00;Locus_id=Os06g0647150;Note=Hypothetical protein.;Transcript_evidence=tplb0021b07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0647150-00
Chr06	irgsp1_rep	five_prime_UTR	26454033	26454632	.	-	.	Parent=Os06t0647150-00
Chr06	irgsp1_rep	five_prime_UTR	26453332	26453731	.	-	.	Parent=Os06t0647150-00
Chr06	irgsp1_rep	five_prime_UTR	26453024	26453116	.	-	.	Parent=Os06t0647150-00
Chr06	irgsp1_rep	five_prime_UTR	26452567	26452929	.	-	.	Parent=Os06t0647150-00
Chr06	irgsp1_rep	five_prime_UTR	26451110	26451125	.	-	.	Parent=Os06t0647150-00
Chr06	irgsp1_rep	CDS	26450990	26451109	.	-	0	Parent=Os06t0647150-00
Chr06	irgsp1_rep	CDS	26450752	26450891	.	-	0	Parent=Os06t0647150-00
Chr06	irgsp1_rep	mRNA	26450761	26454696	.	+	.	ID=Os06t0647200-01;Name=Os06t0647200-01;Locus_id=Os06g0647200;CGSNL Gene Symbol=RR25;CGSNL Gene Name=B-TYPE RESPONSE REGULATOR 5;Oryzabase Gene Symbol Synonym(s)=OsRR25%2C Rrb3%2C Orr5%2C OsRR21%2C OsRRB3;Oryzabase Gene Name Synonym(s)=B-type response regulator 5%2C B-type RR 3;Note=Similar to Response regulator.;Transcript_evidence=AK363760 (DDBJ);ORF_evidence=A1A6A6 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: two-component response regulator activity (GO:0000156),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),CheY-like superfamily (IPR011006),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);Oryzabase=8152;TENOR=Os06t0647200-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	26450761	26450884	.	+	0	Parent=Os06t0647200-01
Chr06	irgsp1_rep	CDS	26450986	26451138	.	+	2	Parent=Os06t0647200-01
Chr06	irgsp1_rep	CDS	26452581	26452931	.	+	2	Parent=Os06t0647200-01
Chr06	irgsp1_rep	CDS	26453027	26453103	.	+	2	Parent=Os06t0647200-01
Chr06	irgsp1_rep	CDS	26453317	26453712	.	+	0	Parent=Os06t0647200-01
Chr06	irgsp1_rep	CDS	26454019	26454696	.	+	0	Parent=Os06t0647200-01
Chr06	irgsp1_rep	mRNA	26450761	26455305	.	+	.	ID=Os06t0647200-02;Name=Os06t0647200-02;Locus_id=Os06g0647200;RAP-DB Gene Symbol Synonym(s)=ORR5%2C ORR5%2C Orr5%2C OsRR25%2C Rrb3%2C OsRR21%2C OsRRB3;RAP-DB Gene Name Synonym(s)=B-TYPE RESPONSE REGULATOR 5%2C B-type response regulator 5%2C B-type RR 3;CGSNL Gene Symbol=RR25;CGSNL Gene Name=B-TYPE RESPONSE REGULATOR 5;Oryzabase Gene Symbol Synonym(s)=OsRR25%2C Rrb3%2C Orr5%2C OsRR21%2C OsRRB3;Oryzabase Gene Name Synonym(s)=B-type response regulator 5%2C B-type RR 3;Note=B-type response regulator%2C Cytokinin signaling;Transcript_evidence=BR000254 (DDBJ);ORF_evidence=A1A6A6 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: two-component response regulator activity (GO:0000156),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT/Myb domain (IPR001005),Signal transduction response regulator%2C receiver domain (IPR001789),Myb DNA-binding domain%2C plants (IPR006447),Homeodomain-like (IPR009057),CheY-like superfamily (IPR011006),Myb domain%2C DNA-binding (IPR017930);Manual Curation=May 28%2C 2010;Literature_PMID=16919402,17293362;Oryzabase=8152;TENOR=Os06t0647200-02
Chr06	irgsp1_rep	CDS	26450761	26450884	.	+	0	Parent=Os06t0647200-02
Chr06	irgsp1_rep	CDS	26450986	26451138	.	+	2	Parent=Os06t0647200-02
Chr06	irgsp1_rep	CDS	26452581	26452931	.	+	2	Parent=Os06t0647200-02
Chr06	irgsp1_rep	CDS	26453027	26453103	.	+	2	Parent=Os06t0647200-02
Chr06	irgsp1_rep	CDS	26453317	26454634	.	+	0	Parent=Os06t0647200-02
Chr06	irgsp1_rep	CDS	26455256	26455305	.	+	2	Parent=Os06t0647200-02
Chr06	irgsp1_rep	mRNA	26456312	26461805	.	-	.	ID=Os06t0647400-02;Name=Os06t0647400-02;Locus_id=Os06g0647400;Oryzabase Gene Symbol Synonym(s)=OsProCP2%2C PROCP2;Oryzabase Gene Name Synonym(s)=Lysosomal Pro-x Carboxypeptidase 2%2C LYSOSOMAL PRO-X CARBOXYPEPTIDASE 2;Note=Similar to Lysosomal Pro-X carboxypeptidase.;Transcript_evidence=AK068457 (DDBJ%2C Best hit),AK103281 (DDBJ%2C Best hit);ORF_evidence=B6TWH6 (UniProt);NIAS_FLcDNA=J013151A14,J033124L23;Oryzabase=20050;Expression=AK068457;TENOR=Os06t0647400-02;KEGG=Os06t0647400-02 (EC:3.4.16.2)
Chr06	irgsp1_rep	five_prime_UTR	26461792	26461805	.	-	.	Parent=Os06t0647400-02
Chr06	irgsp1_rep	CDS	26461300	26461791	.	-	0	Parent=Os06t0647400-02
Chr06	irgsp1_rep	CDS	26461043	26461223	.	-	0	Parent=Os06t0647400-02
Chr06	irgsp1_rep	CDS	26459988	26460121	.	-	2	Parent=Os06t0647400-02
Chr06	irgsp1_rep	CDS	26458718	26458830	.	-	0	Parent=Os06t0647400-02
Chr06	irgsp1_rep	CDS	26457879	26458002	.	-	1	Parent=Os06t0647400-02
Chr06	irgsp1_rep	CDS	26457529	26457684	.	-	0	Parent=Os06t0647400-02
Chr06	irgsp1_rep	CDS	26457303	26457455	.	-	0	Parent=Os06t0647400-02
Chr06	irgsp1_rep	CDS	26457117	26457196	.	-	0	Parent=Os06t0647400-02
Chr06	irgsp1_rep	CDS	26456948	26456997	.	-	1	Parent=Os06t0647400-02
Chr06	irgsp1_rep	CDS	26456736	26456872	.	-	2	Parent=Os06t0647400-02
Chr06	irgsp1_rep	three_prime_UTR	26456312	26456735	.	-	.	Parent=Os06t0647400-02
Chr06	irgsp1_rep	mRNA	26468396	26469595	.	-	.	ID=Os06t0647500-01;Name=Os06t0647500-01;Locus_id=Os06g0647500;Note=DNA/RNA non-specific endonuclease%2C active site domain containing protein.;Transcript_evidence=AK072681 (DDBJ%2C Best hit),AK109473 (DDBJ%2C Best hit),AK120334 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023138J06,001-129-A12,J013059I04;Expression=AK072681;TENOR=Os06t0647500-01;KEGG=Os06t0647500-01
Chr06	irgsp1_rep	five_prime_UTR	26469493	26469595	.	-	.	Parent=Os06t0647500-01
Chr06	irgsp1_rep	CDS	26469262	26469492	.	-	0	Parent=Os06t0647500-01
Chr06	irgsp1_rep	three_prime_UTR	26468396	26469261	.	-	.	Parent=Os06t0647500-01
Chr06	irgsp1_rep	mRNA	26471877	26473706	.	-	.	ID=Os06t0647700-01;Name=Os06t0647700-01;Locus_id=Os06g0647700;Note=Hypothetical protein.;Transcript_evidence=AK105627 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-200-D01;Expression=AK105627;TENOR=Os06t0647700-01;KEGG=Os06t0647700-01
Chr06	irgsp1_rep	five_prime_UTR	26472352	26473706	.	-	.	Parent=Os06t0647700-01
Chr06	irgsp1_rep	CDS	26471971	26472351	.	-	0	Parent=Os06t0647700-01
Chr06	irgsp1_rep	three_prime_UTR	26471877	26471970	.	-	.	Parent=Os06t0647700-01
Chr06	irgsp1_rep	mRNA	26477964	26478872	.	-	.	ID=Os06t0647801-01;Name=Os06t0647801-01;Locus_id=Os06g0647801;Note=Hypothetical conserved gene.;Transcript_evidence=AK241449 (DDBJ%2C Best hit);ORF_evidence=Q67WZ3 (UniProt);NIAS_FLcDNA=J065163H14;TENOR=Os06t0647801-01;KEGG=Os06t0647801-01
Chr06	irgsp1_rep	five_prime_UTR	26478872	26478872	.	-	.	Parent=Os06t0647801-01
Chr06	irgsp1_rep	CDS	26478785	26478871	.	-	0	Parent=Os06t0647801-01
Chr06	irgsp1_rep	three_prime_UTR	26477964	26478784	.	-	.	Parent=Os06t0647801-01
Chr06	irgsp1_rep	mRNA	26482520	26483810	.	-	.	ID=Os06t0647900-01;Name=Os06t0647900-01;Locus_id=Os06g0647900;Note=Conserved hypothetical protein.;Transcript_evidence=AK073750 (DDBJ%2C Best hit);ORF_evidence=B8B0R6 (UniProt);NIAS_FLcDNA=J033070L21;Expression=AK073750;TENOR=Os06t0647900-01;KEGG=Os06t0647900-01
Chr06	irgsp1_rep	five_prime_UTR	26483605	26483810	.	-	.	Parent=Os06t0647900-01
Chr06	irgsp1_rep	CDS	26483287	26483604	.	-	0	Parent=Os06t0647900-01
Chr06	irgsp1_rep	three_prime_UTR	26482520	26483286	.	-	.	Parent=Os06t0647900-01
Chr06	irgsp1_rep	mRNA	26491474	26494001	.	-	.	ID=Os06t0648200-01;Name=Os06t0648200-01;Locus_id=Os06g0648200;Note=Conserved hypothetical protein.;Transcript_evidence=AK106303 (DDBJ%2C Best hit);ORF_evidence=B9FQ80 (UniProt);NIAS_FLcDNA=002-101-C07;TENOR=Os06t0648200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	26491874	26494001	.	-	.	Parent=Os06t0648200-01
Chr06	irgsp1_rep	CDS	26491691	26491873	.	-	0	Parent=Os06t0648200-01
Chr06	irgsp1_rep	three_prime_UTR	26491474	26491690	.	-	.	Parent=Os06t0648200-01
Chr06	irgsp1_rep	mRNA	26492795	26493759	.	-	.	ID=Os06t0648200-02;Name=Os06t0648200-02;Locus_id=Os06g0648200;Note=Hypothetical protein.;Transcript_evidence=AK063675 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-119-D11;TENOR=Os06t0648200-02;KEGG=Os06t0648200-02
Chr06	irgsp1_rep	five_prime_UTR	26493728	26493759	.	-	.	Parent=Os06t0648200-02
Chr06	irgsp1_rep	CDS	26493179	26493727	.	-	0	Parent=Os06t0648200-02
Chr06	irgsp1_rep	three_prime_UTR	26492795	26493178	.	-	.	Parent=Os06t0648200-02
Chr06	irgsp1_rep	mRNA	26492818	26493346	.	-	.	ID=Os06t0648200-03;Name=Os06t0648200-03;Locus_id=Os06g0648200;Note=Hypothetical conserved gene.;Transcript_evidence=AK063001 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-109-H04;TENOR=Os06t0648200-03
Chr06	irgsp1_rep	five_prime_UTR	26493075	26493346	.	-	.	Parent=Os06t0648200-03
Chr06	irgsp1_rep	CDS	26492818	26493074	.	-	0	Parent=Os06t0648200-03
Chr06	irgsp1_rep	mRNA	26486283	26492343	.	-	.	ID=Os06t0648200-04;Name=Os06t0648200-04;Locus_id=Os06g0648200;Note=Hypothetical conserved gene.;Transcript_evidence=AK240744 (DDBJ%2C Best hit);ORF_evidence=NP_001174932.1 (RefSeq);NIAS_FLcDNA=J043038J17;TENOR=Os06t0648200-04;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	26488955	26492343	.	-	.	Parent=Os06t0648200-04
Chr06	irgsp1_rep	five_prime_UTR	26487019	26487210	.	-	.	Parent=Os06t0648200-04
Chr06	irgsp1_rep	five_prime_UTR	26486610	26486909	.	-	.	Parent=Os06t0648200-04
Chr06	irgsp1_rep	CDS	26486424	26486609	.	-	0	Parent=Os06t0648200-04
Chr06	irgsp1_rep	three_prime_UTR	26486283	26486423	.	-	.	Parent=Os06t0648200-04
Chr06	irgsp1_rep	mRNA	26485898	26487232	.	-	.	ID=Os06t0648200-05;Name=Os06t0648200-05;Locus_id=Os06g0648200;Note=Hypothetical conserved gene.;Transcript_evidence=AK059377 (DDBJ%2C Best hit);ORF_evidence=NP_001174932.1 (RefSeq);NIAS_FLcDNA=001-026-F10;TENOR=Os06t0648200-05;KEGG=Os06t0648200-05
Chr06	irgsp1_rep	five_prime_UTR	26486610	26487232	.	-	.	Parent=Os06t0648200-05
Chr06	irgsp1_rep	CDS	26486424	26486609	.	-	0	Parent=Os06t0648200-05
Chr06	irgsp1_rep	three_prime_UTR	26485898	26486423	.	-	.	Parent=Os06t0648200-05
Chr06	irgsp1_rep	mRNA	26496558	26498428	.	-	.	ID=Os06t0648500-01;Name=Os06t0648500-01;Locus_id=Os06g0648500;Note=Conserved hypothetical protein.;Transcript_evidence=AK106895 (DDBJ%2C Best hit);ORF_evidence=A3BE35 (UniProt);NIAS_FLcDNA=002-118-G11;Expression=AK106895;TENOR=Os06t0648500-01;KEGG=Os06t0648500-01
Chr06	irgsp1_rep	five_prime_UTR	26498377	26498428	.	-	.	Parent=Os06t0648500-01
Chr06	irgsp1_rep	CDS	26498088	26498376	.	-	0	Parent=Os06t0648500-01
Chr06	irgsp1_rep	CDS	26497373	26497845	.	-	2	Parent=Os06t0648500-01
Chr06	irgsp1_rep	CDS	26497002	26497297	.	-	0	Parent=Os06t0648500-01
Chr06	irgsp1_rep	CDS	26496885	26496885	.	-	1	Parent=Os06t0648500-01
Chr06	irgsp1_rep	three_prime_UTR	26496558	26496884	.	-	.	Parent=Os06t0648500-01
Chr06	irgsp1_rep	mRNA	26499433	26500188	.	+	.	ID=Os06t0648600-01;Name=Os06t0648600-01;Locus_id=Os06g0648600;Note=Hypothetical gene.;Transcript_evidence=AK111386 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-182-B12;Expression=AK111386;TENOR=Os06t0648600-01;KEGG=Os06t0648600-01
Chr06	irgsp1_rep	CDS	26499433	26500041	.	+	0	Parent=Os06t0648600-01
Chr06	irgsp1_rep	three_prime_UTR	26500042	26500188	.	+	.	Parent=Os06t0648600-01
Chr06	irgsp1_rep	mRNA	26510006	26511606	.	-	.	ID=Os06t0649000-01;Name=Os06t0649000-01;Locus_id=Os06g0649000;RAP-DB Gene Symbol Synonym(s)=WRKY28%2C WRKY GENE 28;RAP-DB Gene Name Synonym(s)=OsWRKY28%2C Rice WRKY gene28;CGSNL Gene Symbol=WRKY28;CGSNL Gene Name=WRKY GENE 28;Oryzabase Gene Symbol Synonym(s)=OsWRKY28%2C DLN170%2C OsDLN170;Oryzabase Gene Name Synonym(s)=Rice WRKY gene28%2C DLN repressor 170%2C DLN motif protein 170;Note=PAMP (pathogen-associated molecular pattern)-responsive transrepressor%2C Defense response;Transcript_evidence=AK106282;ORF_evidence=Q67WY4;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=WRKY domain (IPR003657);NIAS_FLcDNA=002-101-A04;Manual Curation=October 20%2C 2015;Literature_PMID=23462973,Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6540;TENOR=Os06t0649000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	26511523	26511606	.	-	.	Parent=Os06t0649000-01
Chr06	irgsp1_rep	CDS	26511379	26511522	.	-	0	Parent=Os06t0649000-01
Chr06	irgsp1_rep	CDS	26510849	26511271	.	-	0	Parent=Os06t0649000-01
Chr06	irgsp1_rep	CDS	26510321	26510767	.	-	0	Parent=Os06t0649000-01
Chr06	irgsp1_rep	three_prime_UTR	26510006	26510320	.	-	.	Parent=Os06t0649000-01
Chr06	irgsp1_rep	mRNA	26529305	26538020	.	+	.	ID=Os06t0649500-01;Name=Os06t0649500-01;Locus_id=Os06g0649500;Oryzabase Gene Symbol Synonym(s)=OsWD40-132;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK072591 (DDBJ%2C Best hit);ORF_evidence=NP_197897.3 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),TFIID subunit%2C WD40-associated region (IPR007582),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J023133N22;Oryzabase=10813;Expression=AK072591;TENOR=Os06t0649500-01;KEGG=Os06t0649500-01
Chr06	irgsp1_rep	five_prime_UTR	26529305	26529397	.	+	.	Parent=Os06t0649500-01
Chr06	irgsp1_rep	CDS	26529398	26529531	.	+	0	Parent=Os06t0649500-01
Chr06	irgsp1_rep	CDS	26530392	26530473	.	+	1	Parent=Os06t0649500-01
Chr06	irgsp1_rep	CDS	26531001	26531079	.	+	0	Parent=Os06t0649500-01
Chr06	irgsp1_rep	CDS	26531179	26531276	.	+	2	Parent=Os06t0649500-01
Chr06	irgsp1_rep	CDS	26531404	26531460	.	+	0	Parent=Os06t0649500-01
Chr06	irgsp1_rep	CDS	26532044	26532131	.	+	0	Parent=Os06t0649500-01
Chr06	irgsp1_rep	CDS	26532241	26532350	.	+	2	Parent=Os06t0649500-01
Chr06	irgsp1_rep	CDS	26532533	26532634	.	+	0	Parent=Os06t0649500-01
Chr06	irgsp1_rep	CDS	26532889	26533040	.	+	0	Parent=Os06t0649500-01
Chr06	irgsp1_rep	CDS	26533841	26533951	.	+	1	Parent=Os06t0649500-01
Chr06	irgsp1_rep	CDS	26534027	26534094	.	+	1	Parent=Os06t0649500-01
Chr06	irgsp1_rep	CDS	26534185	26534226	.	+	2	Parent=Os06t0649500-01
Chr06	irgsp1_rep	CDS	26534640	26534804	.	+	2	Parent=Os06t0649500-01
Chr06	irgsp1_rep	CDS	26534906	26534982	.	+	2	Parent=Os06t0649500-01
Chr06	irgsp1_rep	CDS	26536302	26536418	.	+	0	Parent=Os06t0649500-01
Chr06	irgsp1_rep	CDS	26536557	26536822	.	+	0	Parent=Os06t0649500-01
Chr06	irgsp1_rep	CDS	26537342	26537437	.	+	1	Parent=Os06t0649500-01
Chr06	irgsp1_rep	CDS	26537521	26537587	.	+	1	Parent=Os06t0649500-01
Chr06	irgsp1_rep	CDS	26537680	26537733	.	+	0	Parent=Os06t0649500-01
Chr06	irgsp1_rep	three_prime_UTR	26537734	26538020	.	+	.	Parent=Os06t0649500-01
Chr06	irgsp1_rep	mRNA	26529354	26534758	.	+	.	ID=Os06t0649500-02;Name=Os06t0649500-02;Locus_id=Os06g0649500;Oryzabase Gene Symbol Synonym(s)=OsWD40-132;Note=TFIID subunit%2C WD40-associated region domain containing protein.;Transcript_evidence=AK288906 (DDBJ%2C Best hit);ORF_evidence=NP_001058217.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634);InterPro=TFIID subunit%2C WD40-associated region (IPR007582);NIAS_FLcDNA=J090081A21;Oryzabase=10813;TENOR=Os06t0649500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	26529354	26530356	.	+	.	Parent=Os06t0649500-02
Chr06	irgsp1_rep	CDS	26530357	26530578	.	+	0	Parent=Os06t0649500-02
Chr06	irgsp1_rep	three_prime_UTR	26530579	26534758	.	+	.	Parent=Os06t0649500-02
Chr06	irgsp1_rep	mRNA	26532548	26534783	.	-	.	ID=Os06t0649550-00;Name=Os06t0649550-00;Locus_id=Os06g0649550;Note=Non-protein coding transcript.;Transcript_evidence=BT086930 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0649550-00
Chr06	irgsp1_rep	exon	26534628	26534783	.	-	.	Parent=Os06t0649550-00
Chr06	irgsp1_rep	exon	26534023	26534123	.	-	.	Parent=Os06t0649550-00
Chr06	irgsp1_rep	exon	26533842	26533941	.	-	.	Parent=Os06t0649550-00
Chr06	irgsp1_rep	exon	26532887	26533041	.	-	.	Parent=Os06t0649550-00
Chr06	irgsp1_rep	exon	26532548	26532629	.	-	.	Parent=Os06t0649550-00
Chr06	irgsp1_rep	mRNA	26554537	26560758	.	+	.	ID=Os06t0649600-01;Name=Os06t0649600-01;Locus_id=Os06g0649600;Note=Non-protein coding transcript.;Transcript_evidence=AK103769 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J033143J08;TENOR=Os06t0649600-01
Chr06	irgsp1_rep	exon	26554537	26555345	.	+	.	Parent=Os06t0649600-01
Chr06	irgsp1_rep	exon	26555715	26555834	.	+	.	Parent=Os06t0649600-01
Chr06	irgsp1_rep	exon	26556115	26556228	.	+	.	Parent=Os06t0649600-01
Chr06	irgsp1_rep	exon	26560137	26560255	.	+	.	Parent=Os06t0649600-01
Chr06	irgsp1_rep	exon	26560369	26560758	.	+	.	Parent=Os06t0649600-01
Chr06	irgsp1_rep	mRNA	26563065	26565979	.	+	.	ID=Os06t0649700-00;Name=Os06t0649700-00;Locus_id=Os06g0649700;Note=Similar to DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein.;Transcript_evidence=AK361085 (DDBJ);ORF_evidence=NP_200294.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=CytoChrome b561%2C eukaryote (IPR004877),DOMON domain (IPR005018),CytoChrome b561/ferric reductase transmembrane (IPR006593),DM13 domain (IPR019545);TENOR=Os06t0649700-00
Chr06	irgsp1_rep	five_prime_UTR	26563065	26563276	.	+	.	Parent=Os06t0649700-00
Chr06	irgsp1_rep	CDS	26563277	26565979	.	+	0	Parent=Os06t0649700-00
Chr06	irgsp1_rep	mRNA	26569417	26572458	.	-	.	ID=Os06t0649800-01;Name=Os06t0649800-01;Locus_id=Os06g0649800;Oryzabase Gene Symbol Synonym(s)=Sdt97;Note=Similar to DNA-3-methyladenine glycosylase I.;Transcript_evidence=AK287880 (DDBJ%2C Best hit);ORF_evidence=B6U9I4 (UniProt);GO=Biological Process: DNA repair (GO:0006281),Biological Process: base-excision repair (GO:0006284),Molecular Function: catalytic activity (GO:0003824),Molecular Function: DNA-3-methyladenine glycosylase I activity (GO:0008725);InterPro=Methyladenine glycosylase (IPR005019),DNA glycosylase (IPR011257);NIAS_FLcDNA=J065206E06;Oryzabase=21091;TENOR=Os06t0649800-01;KEGG=Os06t0649800-01 (EC:3.2.2.20)
Chr06	irgsp1_rep	five_prime_UTR	26572107	26572458	.	-	.	Parent=Os06t0649800-01
Chr06	irgsp1_rep	CDS	26571500	26572106	.	-	0	Parent=Os06t0649800-01
Chr06	irgsp1_rep	CDS	26570522	26570579	.	-	2	Parent=Os06t0649800-01
Chr06	irgsp1_rep	CDS	26570346	26570429	.	-	1	Parent=Os06t0649800-01
Chr06	irgsp1_rep	CDS	26570125	26570266	.	-	1	Parent=Os06t0649800-01
Chr06	irgsp1_rep	CDS	26569636	26570031	.	-	0	Parent=Os06t0649800-01
Chr06	irgsp1_rep	three_prime_UTR	26569417	26569635	.	-	.	Parent=Os06t0649800-01
Chr06	irgsp1_rep	mRNA	26575128	26579581	.	-	.	ID=Os06t0649900-01;Name=Os06t0649900-01;Locus_id=Os06g0649900;CGSNL Gene Symbol=PLDvarphi;CGSNL Gene Name=PHOSPHOLIPASE D varphi;Oryzabase Gene Symbol Synonym(s)=OsPLDvarphi;Note=Phospholipase D/Transphosphatidylase domain containing protein.;Transcript_evidence=AK122015 (DDBJ%2C Best hit);ORF_evidence=B8B0S8 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Phospholipase D/Transphosphatidylase (IPR001736),Phospholipase D/viral envelope (IPR013582);NIAS_FLcDNA=J033111K04;Oryzabase=8703;Expression=AK122015;TENOR=Os06t0649900-01;KEGG=Os06t0649900-01
Chr06	irgsp1_rep	five_prime_UTR	26579496	26579581	.	-	.	Parent=Os06t0649900-01
Chr06	irgsp1_rep	CDS	26579324	26579495	.	-	0	Parent=Os06t0649900-01
Chr06	irgsp1_rep	CDS	26578551	26578755	.	-	2	Parent=Os06t0649900-01
Chr06	irgsp1_rep	CDS	26578146	26578347	.	-	1	Parent=Os06t0649900-01
Chr06	irgsp1_rep	CDS	26577805	26577998	.	-	0	Parent=Os06t0649900-01
Chr06	irgsp1_rep	CDS	26577167	26577320	.	-	1	Parent=Os06t0649900-01
Chr06	irgsp1_rep	CDS	26576454	26576618	.	-	0	Parent=Os06t0649900-01
Chr06	irgsp1_rep	CDS	26575450	26575896	.	-	0	Parent=Os06t0649900-01
Chr06	irgsp1_rep	three_prime_UTR	26575128	26575449	.	-	.	Parent=Os06t0649900-01
Chr06	irgsp1_rep	mRNA	26585560	26588130	.	+	.	ID=Os06t0650100-01;Name=Os06t0650100-01;Locus_id=Os06g0650100;CGSNL Gene Symbol=UBQ5;CGSNL Gene Name=UBIQUITIN 5;Oryzabase Gene Symbol Synonym(s)=RUB2%2C OsRUB2%2C NEDD8;Oryzabase Gene Name Synonym(s)=Ubiquitin 5%2C Ubiquitin%2C NEDD8-like protein RUB2%2C Ubiquitin-related protein 2;Note=Similar to Ubiquitin-NEDD8-like protein RUB2.;Transcript_evidence=AK062354 (DDBJ%2C Best hit);ORF_evidence=P0C031 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin (IPR000626),Ubiquitin conserved site (IPR019954),Ubiquitin supergroup (IPR019955),Ubiquitin subgroup (IPR019956);NIAS_FLcDNA=001-101-G08;Oryzabase=7107;TENOR=Os06t0650100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	26585560	26585704	.	+	.	Parent=Os06t0650100-01
Chr06	irgsp1_rep	CDS	26585705	26585797	.	+	0	Parent=Os06t0650100-01
Chr06	irgsp1_rep	CDS	26587440	26587699	.	+	0	Parent=Os06t0650100-01
Chr06	irgsp1_rep	CDS	26587797	26587905	.	+	1	Parent=Os06t0650100-01
Chr06	irgsp1_rep	three_prime_UTR	26587906	26588130	.	+	.	Parent=Os06t0650100-01
Chr06	irgsp1_rep	mRNA	26591905	26593464	.	-	.	ID=Os06t0650300-01;Name=Os06t0650300-01;Locus_id=Os06g0650300;RAP-DB Gene Symbol Synonym(s)=OsglHAT1%2C GW6a;RAP-DB Gene Name Synonym(s)=GCN5-related N-acetyltransferase-like histone acetyltransferase 1%2C GNAT-like HAT1%2C Grain weight on Chromosome 6-a;Oryzabase Gene Symbol Synonym(s)=OsglHAT1%2C glHAT1%2C GW6a;Oryzabase Gene Name Synonym(s)=GCN5-related N-acetyltransferase-like histone acetyltransferase 1%2C GNAT-like HAT1%2C Grain weight on Chromosome 6-a;Note=Histone H4 acetyltransferase%2C Regulation of grain weight%2C yield%2C and plant biomass;Transcript_evidence=LC003015;ORF_evidence=Q67UR2;GO=Molecular Function: N-acetyltransferase activity (GO:0008080);InterPro=Acyl-CoA N-acyltransferase (IPR016181),GNAT domain (IPR000182);Manual Curation=January 5%2C 2015;Literature_PMID=25535376;Oryzabase=18480;TENOR=Os06t0650300-00
Chr06	irgsp1_rep	CDS	26593177	26593464	.	-	0	Parent=Os06t0650300-01
Chr06	irgsp1_rep	CDS	26592833	26592981	.	-	0	Parent=Os06t0650300-01
Chr06	irgsp1_rep	CDS	26591905	26592727	.	-	1	Parent=Os06t0650300-01
Chr06	irgsp1_rep	mRNA	26631941	26634878	.	+	.	ID=Os06t0650600-01;Name=Os06t0650600-01;Locus_id=Os06g0650600;Note=Nonaspanin (TM9SF) family protein.;Transcript_evidence=AK066545 (DDBJ%2C Best hit);ORF_evidence=B7FAI5 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Nonaspanin (TM9SF) (IPR004240);NIAS_FLcDNA=J013069A19;Expression=AK066545;TENOR=Os06t0650600-01;KEGG=Os06t0650600-01
Chr06	irgsp1_rep	five_prime_UTR	26631941	26632029	.	+	.	Parent=Os06t0650600-01
Chr06	irgsp1_rep	CDS	26632030	26632146	.	+	0	Parent=Os06t0650600-01
Chr06	irgsp1_rep	CDS	26632252	26632416	.	+	0	Parent=Os06t0650600-01
Chr06	irgsp1_rep	CDS	26632495	26632604	.	+	0	Parent=Os06t0650600-01
Chr06	irgsp1_rep	CDS	26632717	26632831	.	+	1	Parent=Os06t0650600-01
Chr06	irgsp1_rep	CDS	26632962	26633074	.	+	0	Parent=Os06t0650600-01
Chr06	irgsp1_rep	CDS	26633193	26633346	.	+	1	Parent=Os06t0650600-01
Chr06	irgsp1_rep	CDS	26633454	26634617	.	+	0	Parent=Os06t0650600-01
Chr06	irgsp1_rep	three_prime_UTR	26634618	26634878	.	+	.	Parent=Os06t0650600-01
Chr06	irgsp1_rep	mRNA	26634857	26635363	.	-	.	ID=Os06t0650700-01;Name=Os06t0650700-01;Locus_id=Os06g0650700;Note=Conserved hypothetical protein.;Transcript_evidence=AK107786 (DDBJ%2C Best hit);ORF_evidence=B8B0T1 (UniProt);NIAS_FLcDNA=002-133-C12;Expression=AK107786;TENOR=Os06t0650700-01;KEGG=Os06t0650700-01
Chr06	irgsp1_rep	five_prime_UTR	26635303	26635363	.	-	.	Parent=Os06t0650700-01
Chr06	irgsp1_rep	CDS	26635087	26635302	.	-	0	Parent=Os06t0650700-01
Chr06	irgsp1_rep	three_prime_UTR	26634857	26635086	.	-	.	Parent=Os06t0650700-01
Chr06	irgsp1_rep	mRNA	26635665	26639720	.	-	.	ID=Os06t0650800-01;Name=Os06t0650800-01;Locus_id=Os06g0650800;Oryzabase Gene Symbol Synonym(s)=OsMGT%2C OsMRS2-1;Oryzabase Gene Name Synonym(s)=Mg transporter%2C magnesium transporter%2C MRS2/MGT family member 1;Note=Similar to MRS2-5.;Transcript_evidence=AK071905 (DDBJ%2C Best hit),AK099209 (DDBJ%2C Best hit);ORF_evidence=Q67UQ7 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: metal ion transmembrane transporter activity (GO:0046873);InterPro=Mg2+ transporter protein%2C CorA-like/Zinc transport protein ZntB (IPR002523);NIAS_FLcDNA=J013059L22,J013059K22;Oryzabase=11559;Expression=AK071905;TENOR=Os06t0650800-01;KEGG=Os06t0650800-01
Chr06	irgsp1_rep	five_prime_UTR	26639620	26639720	.	-	.	Parent=Os06t0650800-01
Chr06	irgsp1_rep	CDS	26639056	26639619	.	-	0	Parent=Os06t0650800-01
Chr06	irgsp1_rep	CDS	26636784	26636912	.	-	0	Parent=Os06t0650800-01
Chr06	irgsp1_rep	CDS	26636355	26636693	.	-	0	Parent=Os06t0650800-01
Chr06	irgsp1_rep	CDS	26636219	26636266	.	-	0	Parent=Os06t0650800-01
Chr06	irgsp1_rep	CDS	26635882	26636112	.	-	0	Parent=Os06t0650800-01
Chr06	irgsp1_rep	three_prime_UTR	26635665	26635881	.	-	.	Parent=Os06t0650800-01
Chr06	irgsp1_rep	mRNA	26635720	26639648	.	-	.	ID=Os06t0650800-02;Name=Os06t0650800-02;Locus_id=Os06g0650800;Oryzabase Gene Symbol Synonym(s)=OsMGT%2C OsMRS2-1;Oryzabase Gene Name Synonym(s)=Mg transporter%2C magnesium transporter%2C MRS2/MGT family member 1;Note=Similar to MRS2-5.;Transcript_evidence=AK099071 (DDBJ%2C Best hit);ORF_evidence=Q67UQ7 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: metal ion transmembrane transporter activity (GO:0046873);InterPro=Mg2+ transporter protein%2C CorA-like/Zinc transport protein ZntB (IPR002523);NIAS_FLcDNA=J013164B03;Oryzabase=11559;Expression=AK099071;TENOR=Os06t0650800-02;KEGG=Os06t0650800-02
Chr06	irgsp1_rep	five_prime_UTR	26639620	26639648	.	-	.	Parent=Os06t0650800-02
Chr06	irgsp1_rep	CDS	26639056	26639619	.	-	0	Parent=Os06t0650800-02
Chr06	irgsp1_rep	CDS	26636784	26636912	.	-	0	Parent=Os06t0650800-02
Chr06	irgsp1_rep	CDS	26636355	26636693	.	-	0	Parent=Os06t0650800-02
Chr06	irgsp1_rep	CDS	26636219	26636266	.	-	0	Parent=Os06t0650800-02
Chr06	irgsp1_rep	CDS	26635882	26636112	.	-	0	Parent=Os06t0650800-02
Chr06	irgsp1_rep	three_prime_UTR	26635720	26635881	.	-	.	Parent=Os06t0650800-02
Chr06	irgsp1_rep	mRNA	26646375	26647794	.	-	.	ID=Os06t0650900-01;Name=Os06t0650900-01;Locus_id=Os06g0650900;Oryzabase Gene Symbol Synonym(s)=OsDjC56;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C56%2C rice DJC22 homolog;Note=Conserved hypothetical protein.;Transcript_evidence=AK071882 (DDBJ%2C Best hit);ORF_evidence=A3BE47 (UniProt);NIAS_FLcDNA=J013046G03;Oryzabase=12213;TENOR=Os06t0650900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	26647577	26647794	.	-	.	Parent=Os06t0650900-01
Chr06	irgsp1_rep	five_prime_UTR	26646795	26647518	.	-	.	Parent=Os06t0650900-01
Chr06	irgsp1_rep	CDS	26646645	26646794	.	-	0	Parent=Os06t0650900-01
Chr06	irgsp1_rep	three_prime_UTR	26646375	26646644	.	-	.	Parent=Os06t0650900-01
Chr06	irgsp1_rep	mRNA	26646375	26647793	.	-	.	ID=Os06t0650900-02;Name=Os06t0650900-02;Locus_id=Os06g0650900;Oryzabase Gene Symbol Synonym(s)=OsDjC56;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C56%2C rice DJC22 homolog;Note=Heat shock protein DnaJ family protein.;Transcript_evidence=AK107961 (DDBJ%2C Best hit);ORF_evidence=A2YFN8 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095);NIAS_FLcDNA=002-135-C09;Oryzabase=12213;Expression=AK107961;TENOR=Os06t0650900-02;KEGG=Os06t0650900-02
Chr06	irgsp1_rep	five_prime_UTR	26647683	26647793	.	-	.	Parent=Os06t0650900-02
Chr06	irgsp1_rep	CDS	26647461	26647682	.	-	0	Parent=Os06t0650900-02
Chr06	irgsp1_rep	CDS	26647254	26647322	.	-	0	Parent=Os06t0650900-02
Chr06	irgsp1_rep	CDS	26646645	26646782	.	-	0	Parent=Os06t0650900-02
Chr06	irgsp1_rep	three_prime_UTR	26646375	26646644	.	-	.	Parent=Os06t0650900-02
Chr06	irgsp1_rep	mRNA	26650225	26652370	.	-	.	ID=Os06t0651000-01;Name=Os06t0651000-01;Locus_id=Os06g0651000;Oryzabase Gene Symbol Synonym(s)=DHFR;Oryzabase Gene Name Synonym(s)=dihydroflavonol 4-reductase%2C NADPH HC-toxin reductase;Note=Similar to Helminthosporium carbonum susceptibility1.;Transcript_evidence=AK065812 (DDBJ%2C Best hit);ORF_evidence=NP_001105920.1 (RefSeq);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013038A03;Oryzabase=16787;TENOR=Os06t0651000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	26652346	26652370	.	-	.	Parent=Os06t0651000-01
Chr06	irgsp1_rep	CDS	26652201	26652345	.	-	0	Parent=Os06t0651000-01
Chr06	irgsp1_rep	CDS	26651899	26652071	.	-	2	Parent=Os06t0651000-01
Chr06	irgsp1_rep	CDS	26651346	26651624	.	-	0	Parent=Os06t0651000-01
Chr06	irgsp1_rep	three_prime_UTR	26650925	26651345	.	-	.	Parent=Os06t0651000-01
Chr06	irgsp1_rep	three_prime_UTR	26650225	26650569	.	-	.	Parent=Os06t0651000-01
Chr06	irgsp1_rep	mRNA	26652924	26659231	.	-	.	ID=Os06t0651100-01;Name=Os06t0651100-01;Locus_id=Os06g0651100;Note=Similar to NADPH HC toxin reductase.;Transcript_evidence=AK063834 (DDBJ%2C Best hit);ORF_evidence=O49165 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-122-B06;TENOR=Os06t0651100-01
Chr06	irgsp1_rep	five_prime_UTR	26659120	26659231	.	-	.	Parent=Os06t0651100-01
Chr06	irgsp1_rep	CDS	26658981	26659119	.	-	0	Parent=Os06t0651100-01
Chr06	irgsp1_rep	CDS	26658719	26658897	.	-	2	Parent=Os06t0651100-01
Chr06	irgsp1_rep	CDS	26657244	26657456	.	-	0	Parent=Os06t0651100-01
Chr06	irgsp1_rep	CDS	26656413	26656801	.	-	0	Parent=Os06t0651100-01
Chr06	irgsp1_rep	CDS	26653105	26653261	.	-	1	Parent=Os06t0651100-01
Chr06	irgsp1_rep	three_prime_UTR	26652924	26653104	.	-	.	Parent=Os06t0651100-01
Chr06	irgsp1_rep	mRNA	26652937	26659172	.	-	.	ID=Os06t0651100-02;Name=Os06t0651100-02;Locus_id=Os06g0651100;Note=Similar to NADPH HC toxin reductase.;Transcript_evidence=AK099340 (DDBJ%2C Best hit);ORF_evidence=O49165 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033024N22;TENOR=Os06t0651100-02
Chr06	irgsp1_rep	five_prime_UTR	26659120	26659172	.	-	.	Parent=Os06t0651100-02
Chr06	irgsp1_rep	CDS	26658981	26659119	.	-	0	Parent=Os06t0651100-02
Chr06	irgsp1_rep	CDS	26658719	26658897	.	-	2	Parent=Os06t0651100-02
Chr06	irgsp1_rep	CDS	26657244	26657456	.	-	0	Parent=Os06t0651100-02
Chr06	irgsp1_rep	CDS	26656413	26656801	.	-	0	Parent=Os06t0651100-02
Chr06	irgsp1_rep	CDS	26653105	26653261	.	-	1	Parent=Os06t0651100-02
Chr06	irgsp1_rep	three_prime_UTR	26652937	26653104	.	-	.	Parent=Os06t0651100-02
Chr06	irgsp1_rep	mRNA	26659966	26660564	.	+	.	ID=Os06t0651200-01;Name=Os06t0651200-01;Locus_id=Os06g0651200;Note=Conserved hypothetical protein.;Transcript_evidence=AK107748 (DDBJ%2C Best hit);ORF_evidence=A2YFP3 (UniProt);NIAS_FLcDNA=002-132-H06;Expression=AK107748;TENOR=Os06t0651200-01;KEGG=Os06t0651200-01
Chr06	irgsp1_rep	five_prime_UTR	26659966	26660026	.	+	.	Parent=Os06t0651200-01
Chr06	irgsp1_rep	CDS	26660027	26660149	.	+	0	Parent=Os06t0651200-01
Chr06	irgsp1_rep	CDS	26660238	26660357	.	+	0	Parent=Os06t0651200-01
Chr06	irgsp1_rep	three_prime_UTR	26660358	26660564	.	+	.	Parent=Os06t0651200-01
Chr06	irgsp1_rep	mRNA	26661060	26664595	.	-	.	ID=Os06t0651300-01;Name=Os06t0651300-01;Locus_id=Os06g0651300;Note=Zinc finger%2C U1-type domain containing protein.;Transcript_evidence=AK073865 (DDBJ%2C Best hit);ORF_evidence=A3BE51 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C U1-type (IPR003604),Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J033074H23;Expression=AK073865;TENOR=Os06t0651300-01;KEGG=Os06t0651300-01
Chr06	irgsp1_rep	five_prime_UTR	26664357	26664595	.	-	.	Parent=Os06t0651300-01
Chr06	irgsp1_rep	CDS	26663829	26664356	.	-	0	Parent=Os06t0651300-01
Chr06	irgsp1_rep	CDS	26661598	26662452	.	-	0	Parent=Os06t0651300-01
Chr06	irgsp1_rep	three_prime_UTR	26661060	26661597	.	-	.	Parent=Os06t0651300-01
Chr06	irgsp1_rep	mRNA	26665179	26669592	.	-	.	ID=Os06t0651600-01;Name=Os06t0651600-01;Locus_id=Os06g0651600;Oryzabase Gene Symbol Synonym(s)=OsPP2C58%2C PP2C58%2C OsPP90;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C58%2C protein phosphatase 2C 58%2C protein phosphatase 90;Note=Similar to Protein phosphatase type-2C.;Transcript_evidence=AK112023 (DDBJ%2C Best hit);ORF_evidence=NP_001104960.1 (RefSeq);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=006-311-H05;Oryzabase=17931;Expression=AK112023;TENOR=Os06t0651600-01;KEGG=Os06t0651600-01 (EC:3.1.3.16)
Chr06	irgsp1_rep	five_prime_UTR	26669318	26669592	.	-	.	Parent=Os06t0651600-01
Chr06	irgsp1_rep	five_prime_UTR	26668551	26668564	.	-	.	Parent=Os06t0651600-01
Chr06	irgsp1_rep	CDS	26668434	26668550	.	-	0	Parent=Os06t0651600-01
Chr06	irgsp1_rep	CDS	26667563	26667626	.	-	0	Parent=Os06t0651600-01
Chr06	irgsp1_rep	CDS	26667361	26667469	.	-	2	Parent=Os06t0651600-01
Chr06	irgsp1_rep	CDS	26667115	26667268	.	-	1	Parent=Os06t0651600-01
Chr06	irgsp1_rep	CDS	26666599	26666724	.	-	0	Parent=Os06t0651600-01
Chr06	irgsp1_rep	CDS	26666386	26666509	.	-	0	Parent=Os06t0651600-01
Chr06	irgsp1_rep	CDS	26666239	26666315	.	-	2	Parent=Os06t0651600-01
Chr06	irgsp1_rep	CDS	26666082	26666134	.	-	0	Parent=Os06t0651600-01
Chr06	irgsp1_rep	CDS	26665884	26665938	.	-	1	Parent=Os06t0651600-01
Chr06	irgsp1_rep	CDS	26665593	26665795	.	-	0	Parent=Os06t0651600-01
Chr06	irgsp1_rep	CDS	26665476	26665500	.	-	1	Parent=Os06t0651600-01
Chr06	irgsp1_rep	three_prime_UTR	26665179	26665475	.	-	.	Parent=Os06t0651600-01
Chr06	irgsp1_rep	mRNA	26665177	26669578	.	-	.	ID=Os06t0651600-02;Name=Os06t0651600-02;Locus_id=Os06g0651600;Oryzabase Gene Symbol Synonym(s)=OsPP2C58%2C PP2C58%2C OsPP90;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C58%2C protein phosphatase 2C 58%2C protein phosphatase 90;Note=Similar to protein phosphatase type-2C.;Transcript_evidence=AK120711 (DDBJ%2C Best hit);ORF_evidence=NP_001104960.1 (RefSeq);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J023001L10;Oryzabase=17931;Expression=AK120711;TENOR=Os06t0651600-02;KEGG=Os06t0651600-02 (EC:3.1.3.16)
Chr06	irgsp1_rep	five_prime_UTR	26669326	26669578	.	-	.	Parent=Os06t0651600-02
Chr06	irgsp1_rep	five_prime_UTR	26668551	26668564	.	-	.	Parent=Os06t0651600-02
Chr06	irgsp1_rep	CDS	26668434	26668550	.	-	0	Parent=Os06t0651600-02
Chr06	irgsp1_rep	CDS	26667563	26667626	.	-	0	Parent=Os06t0651600-02
Chr06	irgsp1_rep	CDS	26667361	26667469	.	-	2	Parent=Os06t0651600-02
Chr06	irgsp1_rep	CDS	26667115	26667268	.	-	1	Parent=Os06t0651600-02
Chr06	irgsp1_rep	CDS	26666599	26666724	.	-	0	Parent=Os06t0651600-02
Chr06	irgsp1_rep	CDS	26666386	26666509	.	-	0	Parent=Os06t0651600-02
Chr06	irgsp1_rep	CDS	26666239	26666315	.	-	2	Parent=Os06t0651600-02
Chr06	irgsp1_rep	CDS	26666078	26666134	.	-	0	Parent=Os06t0651600-02
Chr06	irgsp1_rep	three_prime_UTR	26665884	26666077	.	-	.	Parent=Os06t0651600-02
Chr06	irgsp1_rep	three_prime_UTR	26665593	26665795	.	-	.	Parent=Os06t0651600-02
Chr06	irgsp1_rep	three_prime_UTR	26665177	26665500	.	-	.	Parent=Os06t0651600-02
Chr06	irgsp1_rep	mRNA	26676696	26677651	.	+	.	ID=Os06t0651900-01;Name=Os06t0651900-01;Locus_id=Os06g0651900;Oryzabase Gene Symbol Synonym(s)=OsRCI2-9;Oryzabase Gene Name Synonym(s)=rare cold-inducible 2-9;Note=Uncharacterised protein family UPF0057 domain containing protein.;Transcript_evidence=AK108564 (DDBJ%2C Best hit);ORF_evidence=NP_001151922.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Proteolipid membrane potential modulator (IPR000612);NIAS_FLcDNA=002-145-C08;Oryzabase=18173;Expression=AK108564;TENOR=Os06t0651900-01;KEGG=Os06t0651900-01
Chr06	irgsp1_rep	five_prime_UTR	26676696	26676852	.	+	.	Parent=Os06t0651900-01
Chr06	irgsp1_rep	CDS	26676853	26676948	.	+	0	Parent=Os06t0651900-01
Chr06	irgsp1_rep	CDS	26677055	26677195	.	+	0	Parent=Os06t0651900-01
Chr06	irgsp1_rep	three_prime_UTR	26677196	26677651	.	+	.	Parent=Os06t0651900-01
Chr06	irgsp1_rep	mRNA	26680169	26690049	.	+	.	ID=Os06t0652000-01;Name=Os06t0652000-01;Locus_id=Os06g0652000;CGSNL Gene Symbol=RPOTP;CGSNL Gene Name=RNA POLYMERASE;Oryzabase Gene Symbol Synonym(s)=OsRpo Tp%2C OsRpoTp%2C NEP%2C RpoTp;Oryzabase Gene Name Synonym(s)=RNA polymerase%2C Nuclear-Encoded Plastid RNA Polymerase%2C T3/T7-like RNA polymerase;Note=Similar to T3/T7-like RNA polymerase (Fragment).;Transcript_evidence=AK069977 (DDBJ%2C Best hit);ORF_evidence=Q84LK5 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899);InterPro=DNA-directed RNA polymerase%2C phage-type (IPR002092),DNA-directed RNA polymerase%2C helix hairpin domain (IPR024075);NIAS_FLcDNA=J023038J05;Oryzabase=3068;Expression=AK069977;TENOR=Os06t0652000-01;KEGG=Os06t0652000-01 (EC:2.7.7.6)
Chr06	irgsp1_rep	five_prime_UTR	26680169	26680353	.	+	.	Parent=Os06t0652000-01
Chr06	irgsp1_rep	five_prime_UTR	26680721	26680752	.	+	.	Parent=Os06t0652000-01
Chr06	irgsp1_rep	CDS	26680753	26681034	.	+	0	Parent=Os06t0652000-01
Chr06	irgsp1_rep	CDS	26681799	26681993	.	+	0	Parent=Os06t0652000-01
Chr06	irgsp1_rep	CDS	26682078	26682211	.	+	0	Parent=Os06t0652000-01
Chr06	irgsp1_rep	CDS	26682365	26682431	.	+	1	Parent=Os06t0652000-01
Chr06	irgsp1_rep	CDS	26682637	26682695	.	+	0	Parent=Os06t0652000-01
Chr06	irgsp1_rep	CDS	26682856	26682973	.	+	1	Parent=Os06t0652000-01
Chr06	irgsp1_rep	CDS	26683265	26683378	.	+	0	Parent=Os06t0652000-01
Chr06	irgsp1_rep	CDS	26683507	26683638	.	+	0	Parent=Os06t0652000-01
Chr06	irgsp1_rep	CDS	26683728	26684144	.	+	0	Parent=Os06t0652000-01
Chr06	irgsp1_rep	CDS	26684556	26684606	.	+	0	Parent=Os06t0652000-01
Chr06	irgsp1_rep	CDS	26684955	26685025	.	+	0	Parent=Os06t0652000-01
Chr06	irgsp1_rep	CDS	26685719	26685803	.	+	1	Parent=Os06t0652000-01
Chr06	irgsp1_rep	CDS	26685910	26686062	.	+	0	Parent=Os06t0652000-01
Chr06	irgsp1_rep	CDS	26686174	26686248	.	+	0	Parent=Os06t0652000-01
Chr06	irgsp1_rep	CDS	26686407	26686496	.	+	0	Parent=Os06t0652000-01
Chr06	irgsp1_rep	CDS	26687605	26687652	.	+	0	Parent=Os06t0652000-01
Chr06	irgsp1_rep	CDS	26687733	26687847	.	+	0	Parent=Os06t0652000-01
Chr06	irgsp1_rep	CDS	26689008	26689111	.	+	2	Parent=Os06t0652000-01
Chr06	irgsp1_rep	CDS	26689234	26689344	.	+	0	Parent=Os06t0652000-01
Chr06	irgsp1_rep	three_prime_UTR	26689345	26690049	.	+	.	Parent=Os06t0652000-01
Chr06	irgsp1_rep	mRNA	26683592	26690021	.	+	.	ID=Os06t0652000-02;Name=Os06t0652000-02;Locus_id=Os06g0652000;CGSNL Gene Symbol=RPOTP;CGSNL Gene Name=RNA POLYMERASE;Oryzabase Gene Symbol Synonym(s)=OsRpo Tp%2C OsRpoTp%2C NEP%2C RpoTp;Oryzabase Gene Name Synonym(s)=RNA polymerase%2C Nuclear-Encoded Plastid RNA Polymerase%2C T3/T7-like RNA polymerase;Note=Similar to DNA-directed RNA polymerase.;Transcript_evidence=AK058530 (DDBJ%2C Best hit);ORF_evidence=Q84LK5 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899);InterPro=DNA-directed RNA polymerase%2C phage-type (IPR002092);NIAS_FLcDNA=001-017-A06;Oryzabase=3068;Expression=AK058530;TENOR=Os06t0652000-02;KEGG=Os06t0652000-02 (EC:2.7.7.6)
Chr06	irgsp1_rep	five_prime_UTR	26683592	26683593	.	+	.	Parent=Os06t0652000-02
Chr06	irgsp1_rep	CDS	26683594	26683638	.	+	0	Parent=Os06t0652000-02
Chr06	irgsp1_rep	CDS	26683728	26684144	.	+	0	Parent=Os06t0652000-02
Chr06	irgsp1_rep	CDS	26684556	26684606	.	+	0	Parent=Os06t0652000-02
Chr06	irgsp1_rep	CDS	26684955	26685025	.	+	0	Parent=Os06t0652000-02
Chr06	irgsp1_rep	CDS	26685719	26685803	.	+	1	Parent=Os06t0652000-02
Chr06	irgsp1_rep	CDS	26685910	26686062	.	+	0	Parent=Os06t0652000-02
Chr06	irgsp1_rep	CDS	26686174	26686248	.	+	0	Parent=Os06t0652000-02
Chr06	irgsp1_rep	CDS	26686407	26686496	.	+	0	Parent=Os06t0652000-02
Chr06	irgsp1_rep	CDS	26687605	26687652	.	+	0	Parent=Os06t0652000-02
Chr06	irgsp1_rep	CDS	26687733	26687847	.	+	0	Parent=Os06t0652000-02
Chr06	irgsp1_rep	CDS	26689008	26689111	.	+	2	Parent=Os06t0652000-02
Chr06	irgsp1_rep	CDS	26689234	26689344	.	+	0	Parent=Os06t0652000-02
Chr06	irgsp1_rep	three_prime_UTR	26689345	26690021	.	+	.	Parent=Os06t0652000-02
Chr06	irgsp1_rep	mRNA	26690659	26692710	.	+	.	ID=Os06t0652100-00;Name=Os06t0652100-00;Locus_id=Os06g0652100;Note=Uncharacterized conserved protein UCP015417%2C  vWA domain containing protein.;Transcript_evidence=AK334410 (DDBJ);ORF_evidence=NP_001058232.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=von Willebrand factor%2C type A (IPR002035),Uncharacterised conserved protein UCP015417%2C vWA (IPR011205),Domain of unknown function DUF2828 (IPR024553);TENOR=Os06t0652100-00;KEGG=Os06t0652100-00
Chr06	irgsp1_rep	five_prime_UTR	26690659	26690713	.	+	.	Parent=Os06t0652100-00
Chr06	irgsp1_rep	CDS	26690714	26692639	.	+	0	Parent=Os06t0652100-00
Chr06	irgsp1_rep	three_prime_UTR	26692640	26692710	.	+	.	Parent=Os06t0652100-00
Chr06	irgsp1_rep	mRNA	26693488	26694443	.	-	.	ID=Os06t0652200-01;Name=Os06t0652200-01;Locus_id=Os06g0652200;Note=Similar to Hemolysin-III related family protein.;Transcript_evidence=AK108530 (DDBJ%2C Best hit);ORF_evidence=B6TSK1 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Hly-III-related (IPR004254);NIAS_FLcDNA=002-144-C02;TENOR=Os06t0652200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	26694442	26694443	.	-	.	Parent=Os06t0652200-01
Chr06	irgsp1_rep	CDS	26693758	26694441	.	-	0	Parent=Os06t0652200-01
Chr06	irgsp1_rep	three_prime_UTR	26693488	26693757	.	-	.	Parent=Os06t0652200-01
Chr06	irgsp1_rep	mRNA	26693754	26696199	.	+	.	ID=Os06t0652250-00;Name=Os06t0652250-00;Locus_id=Os06g0652250;Note=Hypothetical protein.;Transcript_evidence=BT019264 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0652250-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	26693754	26694387	.	+	.	Parent=Os06t0652250-00
Chr06	irgsp1_rep	CDS	26694388	26694444	.	+	0	Parent=Os06t0652250-00
Chr06	irgsp1_rep	CDS	26695832	26695985	.	+	0	Parent=Os06t0652250-00
Chr06	irgsp1_rep	CDS	26696100	26696176	.	+	2	Parent=Os06t0652250-00
Chr06	irgsp1_rep	three_prime_UTR	26696177	26696199	.	+	.	Parent=Os06t0652250-00
Chr06	irgsp1_rep	mRNA	26698962	26700005	.	-	.	ID=Os06t0652300-00;Name=Os06t0652300-00;Locus_id=Os06g0652300;Note=Similar to GDP-4-keto-6-deoxy-D-mannose-3%2C 5-epimerase-4-reductase (GER1)%3B 21556- 22494.;Transcript_evidence=Q67WR5 (UniProt);ORF_evidence=Q67WR5 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);TENOR=Os06t0652300-00
Chr06	irgsp1_rep	CDS	26698962	26700005	.	-	0	Parent=Os06t0652300-00
Chr06	irgsp1_rep	mRNA	26708003	26709559	.	+	.	ID=Os06t0652400-01;Name=Os06t0652400-01;Locus_id=Os06g0652400;Note=Similar to GDP-4-keto-6-deoxy-D-mannose-3%2C 5-epimerase-4-reductase (GER1)%3B 21556- 22494.;Transcript_evidence=AK071960 (DDBJ%2C Best hit);ORF_evidence=NP_001150237.1 (RefSeq);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013082C20;Expression=AK071960;TENOR=Os06t0652400-01;KEGG=Os06t0652400-01 (EC:1.1.1.271)
Chr06	irgsp1_rep	five_prime_UTR	26708003	26708181	.	+	.	Parent=Os06t0652400-01
Chr06	irgsp1_rep	CDS	26708182	26708203	.	+	0	Parent=Os06t0652400-01
Chr06	irgsp1_rep	CDS	26708285	26709249	.	+	2	Parent=Os06t0652400-01
Chr06	irgsp1_rep	three_prime_UTR	26709250	26709559	.	+	.	Parent=Os06t0652400-01
Chr06	irgsp1_rep	mRNA	26708105	26709667	.	+	.	ID=Os06t0652400-02;Name=Os06t0652400-02;Locus_id=Os06g0652400;Note=Similar to GDP-4-keto-6-deoxy-D-mannose-3%2C 5-epimerase-4-reductase (GER1)%3B 21556- 22494.;Transcript_evidence=AK103529 (DDBJ%2C Best hit),AK120997 (DDBJ%2C Best hit);ORF_evidence=NP_001150237.1 (RefSeq);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033131M24,J023044G20;Expression=AK103529;TENOR=Os06t0652400-02;KEGG=Os06t0652400-02 (EC:1.1.1.271)
Chr06	irgsp1_rep	five_prime_UTR	26708105	26708181	.	+	.	Parent=Os06t0652400-02
Chr06	irgsp1_rep	CDS	26708182	26708203	.	+	0	Parent=Os06t0652400-02
Chr06	irgsp1_rep	CDS	26708285	26709249	.	+	2	Parent=Os06t0652400-02
Chr06	irgsp1_rep	three_prime_UTR	26709250	26709667	.	+	.	Parent=Os06t0652400-02
Chr06	irgsp1_rep	mRNA	26710609	26710681	.	+	.	ID=Os06t0652501-00;Name=Os06t0652501-00;Locus_id=Os06g0652501;Note=Non-protein coding transcript.;Transcript_evidence=X06283 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0652501-00
Chr06	irgsp1_rep	exon	26710609	26710681	.	+	.	Parent=Os06t0652501-00
Chr06	irgsp1_rep	mRNA	26711591	26713561	.	+	.	ID=Os06t0652550-00;Name=Os06t0652550-00;Locus_id=Os06g0652550;Note=Similar to RING-type E3 ubiquitin ligase.;Transcript_evidence=EU975556 (DDBJ);ORF_evidence=B8YPX6 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);TENOR=Os06t0652550-00
Chr06	irgsp1_rep	CDS	26711591	26711803	.	+	0	Parent=Os06t0652550-00
Chr06	irgsp1_rep	CDS	26712031	26712082	.	+	0	Parent=Os06t0652550-00
Chr06	irgsp1_rep	CDS	26713029	26713074	.	+	2	Parent=Os06t0652550-00
Chr06	irgsp1_rep	CDS	26713417	26713561	.	+	1	Parent=Os06t0652550-00
Chr06	irgsp1_rep	mRNA	26714868	26717211	.	+	.	ID=Os06t0652600-01;Name=Os06t0652600-01;Locus_id=Os06g0652600;Note=Similar to Lustrin A.;Transcript_evidence=AK101495 (DDBJ%2C Best hit);ORF_evidence=B8B113 (UniProt);NIAS_FLcDNA=J033043F19;Expression=AK101495;TENOR=Os06t0652600-01;KEGG=Os06t0652600-01
Chr06	irgsp1_rep	five_prime_UTR	26714868	26714917	.	+	.	Parent=Os06t0652600-01
Chr06	irgsp1_rep	CDS	26714918	26715803	.	+	0	Parent=Os06t0652600-01
Chr06	irgsp1_rep	CDS	26715896	26716045	.	+	2	Parent=Os06t0652600-01
Chr06	irgsp1_rep	CDS	26716413	26716933	.	+	2	Parent=Os06t0652600-01
Chr06	irgsp1_rep	three_prime_UTR	26716934	26717211	.	+	.	Parent=Os06t0652600-01
Chr06	irgsp1_rep	mRNA	26715394	26717211	.	+	.	ID=Os06t0652600-02;Name=Os06t0652600-02;Locus_id=Os06g0652600;Note=Conserved hypothetical protein.;Transcript_evidence=AK063970 (DDBJ%2C Best hit);ORF_evidence=Q67WQ9 (UniProt);NIAS_FLcDNA=001-124-B03;TENOR=Os06t0652600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	26715394	26715742	.	+	.	Parent=Os06t0652600-02
Chr06	irgsp1_rep	CDS	26715743	26715803	.	+	0	Parent=Os06t0652600-02
Chr06	irgsp1_rep	CDS	26715896	26716045	.	+	2	Parent=Os06t0652600-02
Chr06	irgsp1_rep	CDS	26716413	26716933	.	+	2	Parent=Os06t0652600-02
Chr06	irgsp1_rep	three_prime_UTR	26716934	26717211	.	+	.	Parent=Os06t0652600-02
Chr06	irgsp1_rep	mRNA	26736608	26744116	.	+	.	ID=Os06t0653000-01;Name=Os06t0653000-01;Locus_id=Os06g0653000;RAP-DB Gene Symbol Synonym(s)=OsGL1-3;RAP-DB Gene Name Synonym(s)=glossy1 homolog%2C Glossy1-homologous gene 3;Oryzabase Gene Symbol Synonym(s)=OsGL1-3;Oryzabase Gene Name Synonym(s)=glossy1 homolog%2C Glossy1-homologous gene 3;Note=Glossy1(GL1) homolog%2C Cuticular wax biosynthesis%2C Drought tolerance;Transcript_evidence=AK070469;ORF_evidence=Q67WQ7;GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Fatty acid hydroxylase (IPR006694),NAD(P)-binding domain (IPR016040),Uncharacterised domain Wax2%2C C-terminal (IPR021940);NIAS_FLcDNA=J023054G01;Manual Curation=April 25%2C 2016;Literature_PMID=25555239,19322663;Oryzabase=13775;Expression=AK070469;TENOR=Os06t0653000-01;KEGG=Os06t0653000-01
Chr06	irgsp1_rep	five_prime_UTR	26736608	26736719	.	+	.	Parent=Os06t0653000-01
Chr06	irgsp1_rep	CDS	26736720	26736780	.	+	0	Parent=Os06t0653000-01
Chr06	irgsp1_rep	CDS	26736954	26737182	.	+	2	Parent=Os06t0653000-01
Chr06	irgsp1_rep	CDS	26738835	26739073	.	+	1	Parent=Os06t0653000-01
Chr06	irgsp1_rep	CDS	26739928	26740147	.	+	2	Parent=Os06t0653000-01
Chr06	irgsp1_rep	CDS	26741745	26741866	.	+	1	Parent=Os06t0653000-01
Chr06	irgsp1_rep	CDS	26742080	26742336	.	+	2	Parent=Os06t0653000-01
Chr06	irgsp1_rep	CDS	26742428	26742535	.	+	0	Parent=Os06t0653000-01
Chr06	irgsp1_rep	CDS	26743067	26743273	.	+	0	Parent=Os06t0653000-01
Chr06	irgsp1_rep	CDS	26743354	26743464	.	+	0	Parent=Os06t0653000-01
Chr06	irgsp1_rep	CDS	26743551	26743880	.	+	0	Parent=Os06t0653000-01
Chr06	irgsp1_rep	three_prime_UTR	26743881	26744116	.	+	.	Parent=Os06t0653000-01
Chr06	irgsp1_rep	mRNA	26749029	26749085	.	+	.	ID=Os06t0653050-00;Name=Os06t0653050-00;Locus_id=Os06g0653050;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0653050-00
Chr06	irgsp1_rep	exon	26749029	26749085	.	+	.	Parent=Os06t0653050-00
Chr06	irgsp1_rep	mRNA	26752554	26755222	.	+	.	ID=Os06t0653100-01;Name=Os06t0653100-01;Locus_id=Os06g0653100;CGSNL Gene Symbol=TET10;CGSNL Gene Name=TETRASPANIN 10;Oryzabase Gene Symbol Synonym(s)=OsTET10;Oryzabase Gene Name Synonym(s)=tetraspanin 10;Note=Senescence-associated protein 5.;Transcript_evidence=AK242956 (DDBJ%2C Best hit);ORF_evidence=NP_001151652.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Tetraspanin%2C subgroup (IPR000301),Tetraspanin (IPR018499),Tetraspanin%2C conserved site (IPR018503);NIAS_FLcDNA=J090089G04;Oryzabase=20315;TENOR=Os06t0653100-01;KEGG=Os06t0653100-01
Chr06	irgsp1_rep	five_prime_UTR	26752554	26752610	.	+	.	Parent=Os06t0653100-01
Chr06	irgsp1_rep	CDS	26752611	26753114	.	+	0	Parent=Os06t0653100-01
Chr06	irgsp1_rep	CDS	26754552	26754857	.	+	0	Parent=Os06t0653100-01
Chr06	irgsp1_rep	three_prime_UTR	26754858	26755222	.	+	.	Parent=Os06t0653100-01
Chr06	irgsp1_rep	mRNA	26756214	26757596	.	-	.	ID=Os06t0653200-01;Name=Os06t0653200-01;Locus_id=Os06g0653200;Oryzabase Gene Symbol Synonym(s)=OsbHLH158. bHLH158;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 158;Note=Basic helix-loop-helix dimerisation region bHLH domain containing protein.;Transcript_evidence=AK058439 (DDBJ%2C Best hit);ORF_evidence=A2YFQ8 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=001-015-F10;Oryzabase=15429;Expression=AK058439;TENOR=Os06t0653200-01;KEGG=Os06t0653200-01
Chr06	irgsp1_rep	five_prime_UTR	26757339	26757596	.	-	.	Parent=Os06t0653200-01
Chr06	irgsp1_rep	CDS	26756824	26757338	.	-	0	Parent=Os06t0653200-01
Chr06	irgsp1_rep	CDS	26756576	26756642	.	-	1	Parent=Os06t0653200-01
Chr06	irgsp1_rep	three_prime_UTR	26756214	26756575	.	-	.	Parent=Os06t0653200-01
Chr06	irgsp1_rep	mRNA	26766488	26768798	.	+	.	ID=Os06t0653300-00;Name=Os06t0653300-00;Locus_id=Os06g0653300;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QP38 (UniProt);TENOR=Os06t0653300-00;KEGG=Os06t0653300-00
Chr06	irgsp1_rep	CDS	26766488	26766568	.	+	0	Parent=Os06t0653300-00
Chr06	irgsp1_rep	CDS	26766984	26767038	.	+	0	Parent=Os06t0653300-00
Chr06	irgsp1_rep	CDS	26767600	26767680	.	+	2	Parent=Os06t0653300-00
Chr06	irgsp1_rep	CDS	26767843	26767891	.	+	2	Parent=Os06t0653300-00
Chr06	irgsp1_rep	CDS	26768774	26768798	.	+	1	Parent=Os06t0653300-00
Chr06	irgsp1_rep	mRNA	26779067	26781799	.	-	.	ID=Os06t0653800-01;Name=Os06t0653800-01;Locus_id=Os06g0653800;Oryzabase Gene Symbol Synonym(s)=OsWD40-133;Note=Similar to WD-repeat protein 57 (Prp8-binding protein) (hPRP8BP) (U5 snRNP- specific 40 kDa protein) (38 kDa splicing factor).;Transcript_evidence=AK103633 (DDBJ%2C Best hit),AK111971 (DDBJ%2C Best hit);ORF_evidence=B6TXG5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J033133P19,006-305-A11;Oryzabase=10814;Expression=AK103633;TENOR=Os06t0653800-01;KEGG=Os06t0653800-01
Chr06	irgsp1_rep	five_prime_UTR	26781651	26781799	.	-	.	Parent=Os06t0653800-01
Chr06	irgsp1_rep	five_prime_UTR	26780221	26780242	.	-	.	Parent=Os06t0653800-01
Chr06	irgsp1_rep	CDS	26779189	26780220	.	-	0	Parent=Os06t0653800-01
Chr06	irgsp1_rep	three_prime_UTR	26779067	26779188	.	-	.	Parent=Os06t0653800-01
Chr06	irgsp1_rep	mRNA	26782832	26784850	.	-	.	ID=Os06t0653900-01;Name=Os06t0653900-01;Locus_id=Os06g0653900;Note=Similar to Protein transport protein SEC61 gamma subunit.;Transcript_evidence=AK059084 (DDBJ%2C Best hit);ORF_evidence=A2X1K6 (UniProt);GO=Biological Process: protein targeting (GO:0006605),Biological Process: intracellular protein transport (GO:0006886),Biological Process: protein transport (GO:0015031),Cellular Component: membrane (GO:0016020),Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450);InterPro=Protein translocase complex%2C SecE/Sec61-gamma subunit (IPR001901),Protein translocase SEC61 complex%2C  gamma subunit (IPR008158),Protein translocase SecE domain (IPR023391);NIAS_FLcDNA=001-022-B02;Expression=AK059084;TENOR=Os06t0653900-01;KEGG=Os06t0653900-01
Chr06	irgsp1_rep	five_prime_UTR	26784764	26784850	.	-	.	Parent=Os06t0653900-01
Chr06	irgsp1_rep	CDS	26784670	26784763	.	-	0	Parent=Os06t0653900-01
Chr06	irgsp1_rep	CDS	26784465	26784580	.	-	2	Parent=Os06t0653900-01
Chr06	irgsp1_rep	three_prime_UTR	26782832	26783128	.	-	.	Parent=Os06t0653900-01
Chr06	irgsp1_rep	mRNA	26785125	26790388	.	-	.	ID=Os06t0654000-01;Name=Os06t0654000-01;Locus_id=Os06g0654000;CGSNL Gene Symbol=UBP7-5;CGSNL Gene Name=UBIQUITIN-SPECIFIC PROCESSING PROTEASE 7-5;Oryzabase Gene Symbol Synonym(s)=OsUBP7-5%2C OsUBP19%2C UBP19;Oryzabase Gene Name Synonym(s)=ubiquitin-specific processing protease 7-5%2C Ubiquitin-specific protease 19;Note=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 family protein.;Transcript_evidence=AK067618 (DDBJ%2C Best hit);ORF_evidence=NP_565576.1 (RefSeq);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Molecular Function: ubiquitin thiolesterase activity (GO:0004221);InterPro=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (IPR001394),Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2%2C conserved site (IPR018200);NIAS_FLcDNA=J013109E09;Oryzabase=22888;Expression=AK067618;TENOR=Os06t0654000-01;KEGG=Os06t0654000-01 (EC:3.1.2.15)
Chr06	irgsp1_rep	five_prime_UTR	26790387	26790388	.	-	.	Parent=Os06t0654000-01
Chr06	irgsp1_rep	CDS	26790216	26790386	.	-	0	Parent=Os06t0654000-01
Chr06	irgsp1_rep	CDS	26790031	26790119	.	-	0	Parent=Os06t0654000-01
Chr06	irgsp1_rep	CDS	26789854	26789939	.	-	1	Parent=Os06t0654000-01
Chr06	irgsp1_rep	CDS	26789607	26789775	.	-	2	Parent=Os06t0654000-01
Chr06	irgsp1_rep	CDS	26789397	26789520	.	-	1	Parent=Os06t0654000-01
Chr06	irgsp1_rep	CDS	26789113	26789270	.	-	0	Parent=Os06t0654000-01
Chr06	irgsp1_rep	CDS	26788428	26788512	.	-	1	Parent=Os06t0654000-01
Chr06	irgsp1_rep	CDS	26788125	26788334	.	-	0	Parent=Os06t0654000-01
Chr06	irgsp1_rep	CDS	26787974	26788035	.	-	0	Parent=Os06t0654000-01
Chr06	irgsp1_rep	CDS	26785806	26787486	.	-	1	Parent=Os06t0654000-01
Chr06	irgsp1_rep	three_prime_UTR	26785125	26785805	.	-	.	Parent=Os06t0654000-01
Chr06	irgsp1_rep	mRNA	26806186	26813928	.	+	.	ID=Os06t0654300-01;Name=Os06t0654300-01;Locus_id=Os06g0654300;RAP-DB Gene Symbol Synonym(s)=MHZ1%2C OsHK1%2C MHZ1/OsHK1;RAP-DB Gene Name Synonym(s)=histidine kinase 1;CGSNL Gene Symbol=HK1;CGSNL Gene Name=HISTIDINE KINASE 1;Oryzabase Gene Symbol Synonym(s)=OsHK1%2C OHK1%2C MHZ1/OsHK1%2C MHZ1%2C OsMHZ1;Oryzabase Gene Name Synonym(s)=histidine kinase 1%2C mao huzi 1;Note=Histidine kinase%2C Modulation of root ethylene responses;Transcript_evidence=KF999959;ORF_evidence=A3BE68;GO=Biological Process: phosphorelay signal transduction system (GO:0000160),Biological Process: signal transduction (GO:0007165),Biological Process: phosphorylation (GO:0016310),Molecular Function: phosphorelay sensor kinase activity (GO:0000155),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=PAS domain superfamily (IPR035965),Signal transduction histidine kinase%2C dimerisation/phosphoacceptor domain superfamily (IPR036097),Histidine kinase/HSP90-like ATPase superfamily (IPR036890),CheY-like superfamily (IPR011006),Signal transduction histidine kinase%2C dimerisation/phosphoacceptor domain (IPR003661),Histidine kinase domain (IPR005467),Histidine kinase/HSP90-like ATPase (IPR003594),Signal transduction histidine kinase-related protein%2C C-terminal (IPR004358),Signal transduction response regulator%2C receiver domain (IPR001789);Manual Curation=January 27%2C 2020;Literature_PMID=31980616;Oryzabase=9841;TENOR=Os06t0654300-00;KEGG=Os06t0654300-00;Subcellular location=cytoplasm (GO:0005737), endoplasmic reticulum membrane (GO:0005789) [co-expressed with OsERS2]
Chr06	irgsp1_rep	five_prime_UTR	26806186	26806725	.	+	.	Parent=Os06t0654300-01
Chr06	irgsp1_rep	five_prime_UTR	26807702	26807860	.	+	.	Parent=Os06t0654300-01
Chr06	irgsp1_rep	CDS	26807861	26808562	.	+	0	Parent=Os06t0654300-01
Chr06	irgsp1_rep	CDS	26808705	26808761	.	+	0	Parent=Os06t0654300-01
Chr06	irgsp1_rep	CDS	26808903	26809130	.	+	0	Parent=Os06t0654300-01
Chr06	irgsp1_rep	CDS	26809440	26809533	.	+	0	Parent=Os06t0654300-01
Chr06	irgsp1_rep	CDS	26809607	26809813	.	+	2	Parent=Os06t0654300-01
Chr06	irgsp1_rep	CDS	26810233	26810363	.	+	2	Parent=Os06t0654300-01
Chr06	irgsp1_rep	CDS	26810595	26810644	.	+	0	Parent=Os06t0654300-01
Chr06	irgsp1_rep	CDS	26810777	26811084	.	+	1	Parent=Os06t0654300-01
Chr06	irgsp1_rep	CDS	26811200	26811303	.	+	2	Parent=Os06t0654300-01
Chr06	irgsp1_rep	CDS	26811462	26812178	.	+	0	Parent=Os06t0654300-01
Chr06	irgsp1_rep	CDS	26812811	26812990	.	+	0	Parent=Os06t0654300-01
Chr06	irgsp1_rep	CDS	26813355	26813483	.	+	0	Parent=Os06t0654300-01
Chr06	irgsp1_rep	three_prime_UTR	26813484	26813928	.	+	.	Parent=Os06t0654300-01
Chr06	irgsp1_rep	mRNA	26829535	26830408	.	+	.	ID=Os06t0654400-00;Name=Os06t0654400-00;Locus_id=Os06g0654400;Note=Hypothetical conserved gene.;Transcript_evidence=CT836304 (DDBJ%2C Best hit);ORF_evidence=B6TNE4 (UniProt);TENOR=Os06t0654400-00;KEGG=Os06t0654400-00
Chr06	irgsp1_rep	five_prime_UTR	26829535	26829644	.	+	.	Parent=Os06t0654400-00
Chr06	irgsp1_rep	CDS	26829645	26830199	.	+	0	Parent=Os06t0654400-00
Chr06	irgsp1_rep	three_prime_UTR	26830200	26830408	.	+	.	Parent=Os06t0654400-00
Chr06	irgsp1_rep	mRNA	26834016	26836134	.	+	.	ID=Os06t0654600-00;Name=Os06t0654600-00;Locus_id=Os06g0654600;CGSNL Gene Symbol=RLCK210;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 210;Oryzabase Gene Symbol Synonym(s)=OsRLCK210;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 210;Note=Similar to BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1.;Transcript_evidence=BT085279 (DDBJ);ORF_evidence=B6TD20 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18906;TENOR=Os06t0654600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	26834016	26834150	.	+	0	Parent=Os06t0654600-00
Chr06	irgsp1_rep	CDS	26834686	26835112	.	+	0	Parent=Os06t0654600-00
Chr06	irgsp1_rep	CDS	26835494	26836134	.	+	2	Parent=Os06t0654600-00
Chr06	irgsp1_rep	mRNA	26843118	26843680	.	-	.	ID=Os06t0654900-01;Name=Os06t0654900-01;Locus_id=Os06g0654900;Oryzabase Gene Symbol Synonym(s)=OsBBX20%2C OsE%2C OsCCT23%2C BBX20%2C CCT23;Oryzabase Gene Name Synonym(s)=B-box-containing protein 20%2C CCT domain-containing gene 23%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 23%2C CCT domain protein 23%2C CONSTANS-like gene E;Note=Similar to CONSTANS-like protein CO6.;Transcript_evidence=AK243265 (DDBJ%2C Best hit);ORF_evidence=NP_001148229.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=CCT domain (IPR010402);NIAS_FLcDNA=J100049E07;Oryzabase=11650;TENOR=Os06t0654900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	26843645	26843680	.	-	.	Parent=Os06t0654900-01
Chr06	irgsp1_rep	CDS	26843399	26843644	.	-	0	Parent=Os06t0654900-01
Chr06	irgsp1_rep	three_prime_UTR	26843118	26843398	.	-	.	Parent=Os06t0654900-01
Chr06	irgsp1_rep	mRNA	26855082	26858660	.	-	.	ID=Os06t0655100-00;Name=Os06t0655100-00;Locus_id=Os06g0655100;Note=Similar to D-3-phosphoglycerate dehydrogenase.;Transcript_evidence=BT085213 (DDBJ);ORF_evidence=B6SYR1 (UniProt);GO=Biological Process: L-serine biosynthetic process (GO:0006564),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: phosphoglycerate dehydrogenase activity (GO:0004617),Molecular Function: amino acid binding (GO:0016597),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: cofactor binding (GO:0048037),Molecular Function: NAD binding (GO:0051287);InterPro=Amino acid-binding ACT (IPR002912),D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain (IPR006139),D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding (IPR006140),D-3-phosphoglycerate dehydrogenase (IPR006236),NAD(P)-binding domain (IPR016040);TENOR=Os06t0655100-00;KEGG=Os06t0655100-00 (EC:1.1.1.95)
Chr06	irgsp1_rep	CDS	26858367	26858660	.	-	0	Parent=Os06t0655100-00
Chr06	irgsp1_rep	CDS	26857962	26858313	.	-	0	Parent=Os06t0655100-00
Chr06	irgsp1_rep	CDS	26856326	26856702	.	-	2	Parent=Os06t0655100-00
Chr06	irgsp1_rep	CDS	26856024	26856134	.	-	0	Parent=Os06t0655100-00
Chr06	irgsp1_rep	CDS	26855841	26855936	.	-	0	Parent=Os06t0655100-00
Chr06	irgsp1_rep	CDS	26855090	26855761	.	-	0	Parent=Os06t0655100-00
Chr06	irgsp1_rep	three_prime_UTR	26855082	26855089	.	-	.	Parent=Os06t0655100-00
Chr06	irgsp1_rep	mRNA	26859075	26859735	.	-	.	ID=Os06t0655200-01;Name=Os06t0655200-01;Locus_id=Os06g0655200;Note=Pollen allergen Lol p2 family protein.;Transcript_evidence=AK121090 (DDBJ%2C Best hit);ORF_evidence=Q01L14 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Pollen allergen Lol p2 (IPR005453),Pollen allergen/expansin%2C C-terminal (IPR007117);NIAS_FLcDNA=J023066C23;Expression=AK121090;TENOR=Os06t0655200-01;KEGG=Os06t0655200-01
Chr06	irgsp1_rep	five_prime_UTR	26859666	26859735	.	-	.	Parent=Os06t0655200-01
Chr06	irgsp1_rep	CDS	26859312	26859665	.	-	0	Parent=Os06t0655200-01
Chr06	irgsp1_rep	three_prime_UTR	26859075	26859311	.	-	.	Parent=Os06t0655200-01
Chr06	irgsp1_rep	mRNA	26877125	26878985	.	-	.	ID=Os06t0655500-01;Name=Os06t0655500-01;Locus_id=Os06g0655500;Oryzabase Gene Symbol Synonym(s)=OsFbox319%2C Os_F0429;Oryzabase Gene Name Synonym(s)=F-box protein 319;Note=Kelch-type beta propeller domain containing protein.;Transcript_evidence=AK069365 (DDBJ%2C Best hit);ORF_evidence=B9FQA2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Galactose oxidase%2C beta-propeller (IPR015916);NIAS_FLcDNA=J023014H04;Oryzabase=17097;Expression=AK069365;TENOR=Os06t0655500-01;KEGG=Os06t0655500-01
Chr06	irgsp1_rep	five_prime_UTR	26878876	26878985	.	-	.	Parent=Os06t0655500-01
Chr06	irgsp1_rep	CDS	26877721	26878875	.	-	0	Parent=Os06t0655500-01
Chr06	irgsp1_rep	three_prime_UTR	26877125	26877720	.	-	.	Parent=Os06t0655500-01
Chr06	irgsp1_rep	mRNA	26877154	26878253	.	-	.	ID=Os06t0655500-02;Name=Os06t0655500-02;Locus_id=Os06g0655500;Oryzabase Gene Symbol Synonym(s)=OsFbox319%2C Os_F0429;Oryzabase Gene Name Synonym(s)=F-box protein 319;Note=Hypothetical conserved gene.;Transcript_evidence=AK105987 (DDBJ%2C Best hit);ORF_evidence=B9FQA2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Kelch-type beta propeller (IPR015915);NIAS_FLcDNA=001-205-G09;Oryzabase=17097;Expression=AK105987;TENOR=Os06t0655500-02;KEGG=Os06t0655500-02
Chr06	irgsp1_rep	five_prime_UTR	26878252	26878253	.	-	.	Parent=Os06t0655500-02
Chr06	irgsp1_rep	CDS	26877721	26878251	.	-	0	Parent=Os06t0655500-02
Chr06	irgsp1_rep	three_prime_UTR	26877154	26877720	.	-	.	Parent=Os06t0655500-02
Chr06	irgsp1_rep	mRNA	26904473	26908029	.	+	.	ID=Os06t0656000-00;Name=Os06t0656000-00;Locus_id=Os06g0656000;Oryzabase Gene Name Synonym(s)=HTH1-related protein;Note=Hypothetical conserved gene.;Transcript_evidence=BT065706 (DDBJ);ORF_evidence=NP_001174936.1 (RefSeq);GO=Biological Process: alcohol metabolic process (GO:0006066),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: choline dehydrogenase activity (GO:0008812),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Glucose-methanol-choline oxidoreductase%2C N-terminal (IPR000172),Glucose-methanol-choline oxidoreductase%2C C-terminal (IPR007867),Glucose-methanol-choline oxidoreductase (IPR012132);Oryzabase=22387;TENOR=Os06t0656000-00;KEGG=Os06t0656000-00 (EC:4.1.2.10)
Chr06	irgsp1_rep	CDS	26904473	26904565	.	+	0	Parent=Os06t0656000-00
Chr06	irgsp1_rep	CDS	26904673	26905065	.	+	0	Parent=Os06t0656000-00
Chr06	irgsp1_rep	CDS	26905264	26905579	.	+	0	Parent=Os06t0656000-00
Chr06	irgsp1_rep	CDS	26906521	26907421	.	+	2	Parent=Os06t0656000-00
Chr06	irgsp1_rep	CDS	26907755	26907836	.	+	1	Parent=Os06t0656000-00
Chr06	irgsp1_rep	three_prime_UTR	26907837	26908029	.	+	.	Parent=Os06t0656000-00
Chr06	irgsp1_rep	mRNA	26910049	26911794	.	+	.	ID=Os06t0656201-00;Name=Os06t0656201-00;Locus_id=Os06g0656201;Note=Conserved hypothetical protein.;Transcript_evidence=AK058397 (DDBJ%2C Secondary hit);ORF_evidence=B8B0Y4 (UniProt);TENOR=Os06t0656201-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	26910049	26910049	.	+	.	Parent=Os06t0656201-00
Chr06	irgsp1_rep	CDS	26910050	26910529	.	+	0	Parent=Os06t0656201-00
Chr06	irgsp1_rep	three_prime_UTR	26910530	26911794	.	+	.	Parent=Os06t0656201-00
Chr06	irgsp1_rep	mRNA	26937180	26940953	.	+	.	ID=Os06t0656300-01;Name=Os06t0656300-01;Locus_id=Os06g0656300;Note=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup domain containing protein.;Transcript_evidence=AK060123 (DDBJ%2C Best hit),AK060127 (DDBJ%2C Best hit),AK104184 (DDBJ%2C Best hit);ORF_evidence=NP_001150865.1 (RefSeq);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup (IPR006459),Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);NIAS_FLcDNA=006-308-G09,006-309-A01,006-302-D02;TENOR=Os06t0656300-01
Chr06	irgsp1_rep	five_prime_UTR	26937180	26937229	.	+	.	Parent=Os06t0656300-01
Chr06	irgsp1_rep	CDS	26937230	26937414	.	+	0	Parent=Os06t0656300-01
Chr06	irgsp1_rep	CDS	26937517	26937658	.	+	1	Parent=Os06t0656300-01
Chr06	irgsp1_rep	CDS	26940356	26940613	.	+	0	Parent=Os06t0656300-01
Chr06	irgsp1_rep	three_prime_UTR	26940614	26940953	.	+	.	Parent=Os06t0656300-01
Chr06	irgsp1_rep	mRNA	26942137	26944369	.	+	.	ID=Os06t0656400-01;Name=Os06t0656400-01;Locus_id=Os06g0656400;Note=Hypothetical protein.;Transcript_evidence=AK067945 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013125P22;TENOR=Os06t0656400-01;KEGG=Os06t0656400-01
Chr06	irgsp1_rep	five_prime_UTR	26942137	26942477	.	+	.	Parent=Os06t0656400-01
Chr06	irgsp1_rep	five_prime_UTR	26942645	26942753	.	+	.	Parent=Os06t0656400-01
Chr06	irgsp1_rep	five_prime_UTR	26943456	26943622	.	+	.	Parent=Os06t0656400-01
Chr06	irgsp1_rep	five_prime_UTR	26943845	26943947	.	+	.	Parent=Os06t0656400-01
Chr06	irgsp1_rep	CDS	26943948	26944050	.	+	0	Parent=Os06t0656400-01
Chr06	irgsp1_rep	CDS	26944148	26944284	.	+	2	Parent=Os06t0656400-01
Chr06	irgsp1_rep	three_prime_UTR	26944285	26944369	.	+	.	Parent=Os06t0656400-01
Chr06	irgsp1_rep	mRNA	26943193	26949889	.	-	.	ID=Os06t0656500-01;Name=Os06t0656500-01;Locus_id=Os06g0656500;RAP-DB Gene Symbol Synonym(s)=4CL4%2C Os4CL4;RAP-DB Gene Name Synonym(s)=4-COUMARATE:COENZYME A LIGASE 4%2C 4-Coumarate:coenzyme A ligase 4;CGSNL Gene Symbol=4CL4;CGSNL Gene Name=4-COUMARATE:COENZYME A LIGASE 4;Oryzabase Gene Symbol Synonym(s)=Os4CL4;Oryzabase Gene Name Synonym(s)=4-coumarate:coenzyme A ligase 4;Note=4-coumarate:coenzyme A ligase%2C Lignin biosynthesis%2C Defense against wounding;Transcript_evidence=AK068985;ORF_evidence=Q67W82;GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873),AMP-binding enzyme%2C C-terminal domain (IPR025110),AMP-binding%2C conserved site (IPR020845);NIAS_FLcDNA=J023002B16;Manual Curation=May 26%2C 2017;Literature_PMID=23246835,21807887;Oryzabase=9683;Expression=AK068985;TENOR=Os06t0656500-01;KEGG=Os06t0656500-01 (EC:6.2.1.12)
Chr06	irgsp1_rep	five_prime_UTR	26949748	26949889	.	-	.	Parent=Os06t0656500-01
Chr06	irgsp1_rep	CDS	26949082	26949747	.	-	0	Parent=Os06t0656500-01
Chr06	irgsp1_rep	CDS	26948161	26948514	.	-	0	Parent=Os06t0656500-01
Chr06	irgsp1_rep	CDS	26947004	26947202	.	-	0	Parent=Os06t0656500-01
Chr06	irgsp1_rep	CDS	26943987	26944200	.	-	2	Parent=Os06t0656500-01
Chr06	irgsp1_rep	CDS	26943801	26943903	.	-	1	Parent=Os06t0656500-01
Chr06	irgsp1_rep	CDS	26943424	26943567	.	-	0	Parent=Os06t0656500-01
Chr06	irgsp1_rep	three_prime_UTR	26943193	26943423	.	-	.	Parent=Os06t0656500-01
Chr06	irgsp1_rep	mRNA	26945598	26949839	.	-	.	ID=Os06t0656500-02;Name=Os06t0656500-02;Locus_id=Os06g0656500;CGSNL Gene Symbol=4CL4;CGSNL Gene Name=4-COUMARATE:COENZYME A LIGASE 4;Oryzabase Gene Symbol Synonym(s)=Os4CL4;Oryzabase Gene Name Synonym(s)=4-coumarate:coenzyme A ligase 4;Note=Similar to cDNA clone:J023002B16%2C full insert sequence.;Transcript_evidence=AK067261 (DDBJ%2C Best hit);ORF_evidence=B7EFQ0 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873),AMP-binding%2C conserved site (IPR020845);NIAS_FLcDNA=J013096G06;Oryzabase=9683;Expression=AK067261;TENOR=Os06t0656500-02;KEGG=Os06t0656500-02 (EC:6.2.1.12)
Chr06	irgsp1_rep	five_prime_UTR	26949748	26949839	.	-	.	Parent=Os06t0656500-02
Chr06	irgsp1_rep	CDS	26949082	26949747	.	-	0	Parent=Os06t0656500-02
Chr06	irgsp1_rep	CDS	26948161	26948514	.	-	0	Parent=Os06t0656500-02
Chr06	irgsp1_rep	CDS	26946885	26947202	.	-	0	Parent=Os06t0656500-02
Chr06	irgsp1_rep	three_prime_UTR	26945598	26946884	.	-	.	Parent=Os06t0656500-02
Chr06	irgsp1_rep	mRNA	26948159	26949749	.	+	.	ID=Os06t0656566-00;Name=Os06t0656566-00;Locus_id=Os06g0656566;Note=Hypothetical gene.;Transcript_evidence=BT062457 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0656566-00;KEGG=Os06t0656566-00
Chr06	irgsp1_rep	five_prime_UTR	26948159	26948191	.	+	.	Parent=Os06t0656566-00
Chr06	irgsp1_rep	CDS	26948192	26948440	.	+	0	Parent=Os06t0656566-00
Chr06	irgsp1_rep	three_prime_UTR	26948441	26948508	.	+	.	Parent=Os06t0656566-00
Chr06	irgsp1_rep	three_prime_UTR	26949077	26949749	.	+	.	Parent=Os06t0656566-00
Chr06	irgsp1_rep	mRNA	26954283	26955645	.	+	.	ID=Os06t0656700-01;Name=Os06t0656700-01;Locus_id=Os06g0656700;Note=Conserved hypothetical protein.;Transcript_evidence=AK110668 (DDBJ%2C Best hit);ORF_evidence=B8B0Y7 (UniProt);NIAS_FLcDNA=002-169-F11;Expression=AK110668;TENOR=Os06t0656700-01;KEGG=Os06t0656700-01
Chr06	irgsp1_rep	five_prime_UTR	26954283	26954363	.	+	.	Parent=Os06t0656700-01
Chr06	irgsp1_rep	CDS	26954364	26954453	.	+	0	Parent=Os06t0656700-01
Chr06	irgsp1_rep	CDS	26955106	26955285	.	+	0	Parent=Os06t0656700-01
Chr06	irgsp1_rep	three_prime_UTR	26955286	26955645	.	+	.	Parent=Os06t0656700-01
Chr06	irgsp1_rep	mRNA	26956110	26956171	.	+	.	ID=Os06t0656725-00;Name=Os06t0656725-00;Locus_id=Os06g0656725;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0656725-00
Chr06	irgsp1_rep	exon	26956110	26956171	.	+	.	Parent=Os06t0656725-00
Chr06	irgsp1_rep	mRNA	26957522	26958621	.	-	.	ID=Os06t0656800-01;Name=Os06t0656800-01;Locus_id=Os06g0656800;CGSNL Gene Symbol=FLA25;CGSNL Gene Name=FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 25;Oryzabase Gene Symbol Synonym(s)=OsFLA25;Oryzabase Gene Name Synonym(s)=fasciclin-like AGP 25%2C fasciclin-like arabinogalactan protein 25;Note=FAS1 domain domain containing protein.;Transcript_evidence=AK109762 (DDBJ%2C Best hit);ORF_evidence=NP_001150349.1 (RefSeq);InterPro=FAS1 domain (IPR000782);NIAS_FLcDNA=002-146-G11;Oryzabase=11360;Expression=AK109762;TENOR=Os06t0656800-01;KEGG=Os06t0656800-01
Chr06	irgsp1_rep	five_prime_UTR	26958605	26958621	.	-	.	Parent=Os06t0656800-01
Chr06	irgsp1_rep	CDS	26958031	26958604	.	-	0	Parent=Os06t0656800-01
Chr06	irgsp1_rep	CDS	26957735	26957970	.	-	2	Parent=Os06t0656800-01
Chr06	irgsp1_rep	three_prime_UTR	26957522	26957734	.	-	.	Parent=Os06t0656800-01
Chr06	irgsp1_rep	mRNA	27025485	27029339	.	+	.	ID=Os06t0657500-01;Name=Os06t0657500-01;Locus_id=Os06g0657500;CGSNL Gene Symbol=PLT2;CGSNL Gene Name=PLETHORA 2;Oryzabase Gene Symbol Synonym(s)=OsPLT2%2C AP2/EREBP#060%2C AP2/EREBP60%2C HL6%2C OsHL6;Oryzabase Gene Name Synonym(s)=Plethora 2%2C APETALA2/ethylene-responsive element binding protein 60%2C Hairy Leaf 6;Note=Hypothetical conserved gene.;Transcript_evidence=AK287673 (DDBJ%2C Best hit);ORF_evidence=F1DK85 (UniProt);NIAS_FLcDNA=J065121E18;Oryzabase=10465;TENOR=Os06t0657500-01;KEGG=Os06t0657500-01
Chr06	irgsp1_rep	five_prime_UTR	27025485	27025603	.	+	.	Parent=Os06t0657500-01
Chr06	irgsp1_rep	CDS	27025604	27025718	.	+	0	Parent=Os06t0657500-01
Chr06	irgsp1_rep	CDS	27025867	27026158	.	+	2	Parent=Os06t0657500-01
Chr06	irgsp1_rep	CDS	27026442	27026607	.	+	1	Parent=Os06t0657500-01
Chr06	irgsp1_rep	three_prime_UTR	27026608	27026691	.	+	.	Parent=Os06t0657500-01
Chr06	irgsp1_rep	three_prime_UTR	27026802	27026890	.	+	.	Parent=Os06t0657500-01
Chr06	irgsp1_rep	three_prime_UTR	27027130	27027203	.	+	.	Parent=Os06t0657500-01
Chr06	irgsp1_rep	three_prime_UTR	27027435	27028240	.	+	.	Parent=Os06t0657500-01
Chr06	irgsp1_rep	three_prime_UTR	27028346	27029339	.	+	.	Parent=Os06t0657500-01
Chr06	irgsp1_rep	mRNA	27025487	27029182	.	+	.	ID=Os06t0657500-02;Name=Os06t0657500-02;Locus_id=Os06g0657500;RAP-DB Gene Symbol Synonym(s)=OsPLT2;RAP-DB Gene Name Synonym(s)=Plethora 2;CGSNL Gene Symbol=PLT2;CGSNL Gene Name=PLETHORA 2;Oryzabase Gene Symbol Synonym(s)=OsPLT2%2C AP2/EREBP#060%2C AP2/EREBP60%2C HL6%2C OsHL6;Oryzabase Gene Name Synonym(s)=Plethora 2%2C APETALA2/ethylene-responsive element binding protein 60%2C Hairy Leaf 6;Note=AP2/ERF transcription factor;Transcript_evidence=AK101959,HQ858843;ORF_evidence=Q67VJ6,F1DK85;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-binding transcription factor activity (GO:0003700);InterPro=DNA-binding domain superfamily (IPR016177),AP2/ERF domain superfamily (IPR036955),AP2/ERF domain (IPR001471);NIAS_FLcDNA=J033075O07;Manual Curation=August 19%2C 2019;Literature_PMID=21807632,18987217;Oryzabase=10465;Expression=AK101959;TENOR=Os06t0657500-02
Chr06	irgsp1_rep	five_prime_UTR	27025487	27025603	.	+	.	Parent=Os06t0657500-02
Chr06	irgsp1_rep	CDS	27025604	27025718	.	+	0	Parent=Os06t0657500-02
Chr06	irgsp1_rep	CDS	27025867	27026158	.	+	2	Parent=Os06t0657500-02
Chr06	irgsp1_rep	CDS	27026442	27026524	.	+	1	Parent=Os06t0657500-02
Chr06	irgsp1_rep	CDS	27026683	27026691	.	+	2	Parent=Os06t0657500-02
Chr06	irgsp1_rep	CDS	27026802	27026890	.	+	2	Parent=Os06t0657500-02
Chr06	irgsp1_rep	CDS	27027130	27027203	.	+	0	Parent=Os06t0657500-02
Chr06	irgsp1_rep	CDS	27027435	27027485	.	+	1	Parent=Os06t0657500-02
Chr06	irgsp1_rep	CDS	27028164	27028240	.	+	1	Parent=Os06t0657500-02
Chr06	irgsp1_rep	CDS	27028346	27028965	.	+	2	Parent=Os06t0657500-02
Chr06	irgsp1_rep	three_prime_UTR	27028966	27029182	.	+	.	Parent=Os06t0657500-02
Chr06	irgsp1_rep	mRNA	27025437	27029339	.	+	.	ID=Os06t0657500-03;Name=Os06t0657500-03;Locus_id=Os06g0657500;RAP-DB Gene Symbol Synonym(s)=HL6;RAP-DB Gene Name Synonym(s)=Hairy Leaf 6;CGSNL Gene Symbol=PLT2;CGSNL Gene Name=PLETHORA 2;Oryzabase Gene Symbol Synonym(s)=OsPLT2%2C AP2/EREBP#060%2C AP2/EREBP60%2C HL6%2C OsHL6;Oryzabase Gene Name Synonym(s)=Plethora 2%2C APETALA2/ethylene-responsive element binding protein 60%2C Hairy Leaf 6;Note=AP2/ERF transcription factor%2C Regulation of trichome formation;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-binding transcription factor activity (GO:0003700);InterPro=DNA-binding domain superfamily (IPR016177),AP2/ERF domain superfamily (IPR036955),AP2/ERF domain (IPR001471);Manual Curation=August 19%2C 2019;Literature_PMID=28965833;Oryzabase=10465;Subcellular location=nucleus (GO:0005634)
Chr06	irgsp1_rep	five_prime_UTR	27025437	27025718	.	+	.	Parent=Os06t0657500-03
Chr06	irgsp1_rep	five_prime_UTR	27025867	27026158	.	+	.	Parent=Os06t0657500-03
Chr06	irgsp1_rep	five_prime_UTR	27026442	27026524	.	+	.	Parent=Os06t0657500-03
Chr06	irgsp1_rep	five_prime_UTR	27026791	27026890	.	+	.	Parent=Os06t0657500-03
Chr06	irgsp1_rep	five_prime_UTR	27027130	27027159	.	+	.	Parent=Os06t0657500-03
Chr06	irgsp1_rep	CDS	27027160	27027203	.	+	0	Parent=Os06t0657500-03
Chr06	irgsp1_rep	CDS	27027435	27027485	.	+	1	Parent=Os06t0657500-03
Chr06	irgsp1_rep	CDS	27028164	27028240	.	+	1	Parent=Os06t0657500-03
Chr06	irgsp1_rep	CDS	27028346	27028965	.	+	2	Parent=Os06t0657500-03
Chr06	irgsp1_rep	three_prime_UTR	27028966	27029339	.	+	.	Parent=Os06t0657500-03
Chr06	irgsp1_rep	mRNA	27042850	27042998	.	-	.	ID=Os06t0657750-00;Name=Os06t0657750-00;Locus_id=Os06g0657750;Note=Conserved hypothetical protein.;Transcript_evidence=EU941673 (DDBJ);ORF_evidence=NP_001047541.1 (RefSeq);TENOR=Os06t0657750-00
Chr06	irgsp1_rep	five_prime_UTR	27042949	27042998	.	-	.	Parent=Os06t0657750-00
Chr06	irgsp1_rep	CDS	27042850	27042948	.	-	0	Parent=Os06t0657750-00
Chr06	irgsp1_rep	mRNA	27047218	27048052	.	-	.	ID=Os06t0658000-00;Name=Os06t0658000-00;Locus_id=Os06g0658000;Note=Similar to AP2-EREBP transcription factor (Fragment).;Transcript_evidence=FP101430 (DDBJ);ORF_evidence=F1DK85 (UniProt);TENOR=Os06t0658000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	27047667	27048052	.	-	0	Parent=Os06t0658000-00
Chr06	irgsp1_rep	CDS	27047218	27047383	.	-	1	Parent=Os06t0658000-00
Chr06	irgsp1_rep	mRNA	27054291	27054779	.	+	.	ID=Os06t0658200-00;Name=Os06t0658200-00;Locus_id=Os06g0658200;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001174937.1 (RefSeq);TENOR=Os06t0658200-00;KEGG=Os06t0658200-00
Chr06	irgsp1_rep	CDS	27054291	27054779	.	+	0	Parent=Os06t0658200-00
Chr06	irgsp1_rep	mRNA	27056503	27059571	.	+	.	ID=Os06t0658350-01;Name=Os06t0658350-01;Locus_id=Os06g0658350;Note=Conserved hypothetical protein.;Transcript_evidence=AK288894 (DDBJ%2C Best hit);ORF_evidence=Q67VQ8 (UniProt);NIAS_FLcDNA=J090080D21;TENOR=Os06t0658350-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	27056503	27058031	.	+	.	Parent=Os06t0658350-01
Chr06	irgsp1_rep	CDS	27058032	27058337	.	+	0	Parent=Os06t0658350-01
Chr06	irgsp1_rep	three_prime_UTR	27058338	27059571	.	+	.	Parent=Os06t0658350-01
Chr06	irgsp1_rep	mRNA	27063980	27067191	.	-	.	ID=Os06t0658400-01;Name=Os06t0658400-01;Locus_id=Os06g0658400;Note=Similar to HAT dimerisation domain-containing protein-like.;Transcript_evidence=AK241867 (DDBJ%2C Best hit);ORF_evidence=C8TFH5 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Zinc finger%2C BED-type predicted (IPR003656),Domain of unknown function DUF659 (IPR007021),HAT dimerisation (IPR008906),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J065217K01;TENOR=Os06t0658400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	27066894	27067191	.	-	.	Parent=Os06t0658400-01
Chr06	irgsp1_rep	CDS	27066893	27066893	.	-	0	Parent=Os06t0658400-01
Chr06	irgsp1_rep	CDS	27066189	27066740	.	-	2	Parent=Os06t0658400-01
Chr06	irgsp1_rep	CDS	27065016	27066093	.	-	2	Parent=Os06t0658400-01
Chr06	irgsp1_rep	CDS	27064578	27064931	.	-	1	Parent=Os06t0658400-01
Chr06	irgsp1_rep	CDS	27064207	27064492	.	-	1	Parent=Os06t0658400-01
Chr06	irgsp1_rep	three_prime_UTR	27063980	27064206	.	-	.	Parent=Os06t0658400-01
Chr06	irgsp1_rep	mRNA	27068985	27074406	.	+	.	ID=Os06t0658500-01;Name=Os06t0658500-01;Locus_id=Os06g0658500;Note=Conserved hypothetical protein.;Transcript_evidence=AK072436 (DDBJ%2C Best hit);ORF_evidence=B9FQB5 (UniProt);NIAS_FLcDNA=J023101E23;Expression=AK072436;TENOR=Os06t0658500-01;KEGG=Os06t0658500-01
Chr06	irgsp1_rep	five_prime_UTR	27068985	27069053	.	+	.	Parent=Os06t0658500-01
Chr06	irgsp1_rep	CDS	27069054	27069279	.	+	0	Parent=Os06t0658500-01
Chr06	irgsp1_rep	CDS	27070754	27070803	.	+	2	Parent=Os06t0658500-01
Chr06	irgsp1_rep	CDS	27070959	27071071	.	+	0	Parent=Os06t0658500-01
Chr06	irgsp1_rep	CDS	27071179	27071458	.	+	1	Parent=Os06t0658500-01
Chr06	irgsp1_rep	CDS	27072009	27072144	.	+	0	Parent=Os06t0658500-01
Chr06	irgsp1_rep	CDS	27072311	27072486	.	+	2	Parent=Os06t0658500-01
Chr06	irgsp1_rep	CDS	27072585	27072681	.	+	0	Parent=Os06t0658500-01
Chr06	irgsp1_rep	CDS	27072773	27072842	.	+	2	Parent=Os06t0658500-01
Chr06	irgsp1_rep	CDS	27073634	27073931	.	+	1	Parent=Os06t0658500-01
Chr06	irgsp1_rep	three_prime_UTR	27073932	27074406	.	+	.	Parent=Os06t0658500-01
Chr06	irgsp1_rep	mRNA	27087548	27092892	.	+	.	ID=Os06t0658900-01;Name=Os06t0658900-01;Locus_id=Os06g0658900;RAP-DB Gene Symbol Synonym(s)=OsSGD1%2C OsVTE2%2C SGD1;RAP-DB Gene Name Synonym(s)=small grain and dwarf1;Oryzabase Gene Symbol Synonym(s)=OsVTE2%2C VTE2%2C SGD1%2C RTD1%2C OsHPT%2C HPT;Oryzabase Gene Name Synonym(s)=VITAMIN E DEFICIENT 2%2C small grain and dwarf1%2C small grain and dwarf 1%2C Rice tocopherol de chancy 1%2C homogentisate phytyltransferase;Note=Homogentisate phytyltransferase (HPT)%2C Tocopherol (vitamin E) biosynthesis%2C Plant development%2C Cold tolerance;Transcript_evidence=AK243323;ORF_evidence=B7FA90;GO=Molecular Function: transferase activity%2C transferring alkyl or aryl (other than methyl) groups (GO:0016765),Cellular Component: integral component of membrane (GO:0016021);InterPro=UbiA prenyltransferase family (IPR000537);NIAS_FLcDNA=J100057F06;Manual Curation=June 1%2C 2017;Literature_PMID=28554480,25098603;Oryzabase=18215;TENOR=Os06t0658900-01;KEGG=Os06t0658900-01 (EC:2.5.1.115);Subcellular location=plastid (GO:0009536)
Chr06	irgsp1_rep	five_prime_UTR	27087548	27087680	.	+	.	Parent=Os06t0658900-01
Chr06	irgsp1_rep	CDS	27087681	27087759	.	+	0	Parent=Os06t0658900-01
Chr06	irgsp1_rep	CDS	27088559	27088848	.	+	2	Parent=Os06t0658900-01
Chr06	irgsp1_rep	CDS	27088980	27089063	.	+	0	Parent=Os06t0658900-01
Chr06	irgsp1_rep	CDS	27089150	27089224	.	+	0	Parent=Os06t0658900-01
Chr06	irgsp1_rep	CDS	27089363	27089446	.	+	0	Parent=Os06t0658900-01
Chr06	irgsp1_rep	CDS	27089831	27089920	.	+	0	Parent=Os06t0658900-01
Chr06	irgsp1_rep	CDS	27090468	27090565	.	+	0	Parent=Os06t0658900-01
Chr06	irgsp1_rep	CDS	27091111	27091210	.	+	1	Parent=Os06t0658900-01
Chr06	irgsp1_rep	CDS	27091307	27091378	.	+	0	Parent=Os06t0658900-01
Chr06	irgsp1_rep	CDS	27091444	27091539	.	+	0	Parent=Os06t0658900-01
Chr06	irgsp1_rep	CDS	27092152	27092256	.	+	0	Parent=Os06t0658900-01
Chr06	irgsp1_rep	CDS	27092456	27092497	.	+	0	Parent=Os06t0658900-01
Chr06	irgsp1_rep	three_prime_UTR	27092498	27092515	.	+	.	Parent=Os06t0658900-01
Chr06	irgsp1_rep	three_prime_UTR	27092599	27092892	.	+	.	Parent=Os06t0658900-01
Chr06	irgsp1_rep	mRNA	27114925	27117096	.	+	.	ID=Os06t0659100-01;Name=Os06t0659100-01;Locus_id=Os06g0659100;RAP-DB Gene Symbol Synonym(s)=OsSPL10%2C SST;RAP-DB Gene Name Synonym(s)=Squamosa promoter-binding-like protein 10;CGSNL Gene Symbol=SPL10;CGSNL Gene Name=RICE SQUAMOSA PROMOTER-BINDING-LIKE 10;Oryzabase Gene Symbol Synonym(s)=OsSPL10;Oryzabase Gene Name Synonym(s)=Squamosa promoter-binding-like protein 10;Note=Squamosa promoter-binding-like protein%2C Transcription factor%2C Salt tolerance%2C Control of trichome formation;Transcript_evidence=BT065712 (maize);ORF_evidence=Q0DAE8;GO=Molecular Function: DNA binding (GO:0003677),Cellular Component: nucleus (GO:0005634);InterPro=SBP domain superfamily (IPR036893),SBP domain (IPR004333);Manual Curation=October 17%2C 2019;Literature_PMID=31611344;Oryzabase=6893;TENOR=Os06t0659100-00;KEGG=Os06t0659100-00;Subcellular location=nucleus (GO:0005634)
Chr06	irgsp1_rep	five_prime_UTR	27114925	27115093	.	+	.	Parent=Os06t0659100-01
Chr06	irgsp1_rep	CDS	27115094	27115773	.	+	0	Parent=Os06t0659100-01
Chr06	irgsp1_rep	CDS	27116225	27116424	.	+	1	Parent=Os06t0659100-01
Chr06	irgsp1_rep	CDS	27116582	27116982	.	+	2	Parent=Os06t0659100-01
Chr06	irgsp1_rep	three_prime_UTR	27116983	27117096	.	+	.	Parent=Os06t0659100-01
Chr06	irgsp1_rep	mRNA	27123569	27128527	.	-	.	ID=Os06t0659200-01;Name=Os06t0659200-01;Locus_id=Os06g0659200;Note=Intron maturase%2C type II family protein.;Transcript_evidence=AK105525 (DDBJ%2C Best hit);ORF_evidence=Q9LZA5 (UniProt);GO=Biological Process: mRNA processing (GO:0006397),Cellular Component: chloroplast (GO:0009507);InterPro=Maturase%2C MatK (IPR002866);NIAS_FLcDNA=001-127-G03;Expression=AK105525;TENOR=Os06t0659200-01;KEGG=Os06t0659200-01
Chr06	irgsp1_rep	five_prime_UTR	27128456	27128527	.	-	.	Parent=Os06t0659200-01
Chr06	irgsp1_rep	CDS	27127952	27128455	.	-	0	Parent=Os06t0659200-01
Chr06	irgsp1_rep	three_prime_UTR	27127789	27127951	.	-	.	Parent=Os06t0659200-01
Chr06	irgsp1_rep	three_prime_UTR	27127642	27127708	.	-	.	Parent=Os06t0659200-01
Chr06	irgsp1_rep	three_prime_UTR	27126300	27126977	.	-	.	Parent=Os06t0659200-01
Chr06	irgsp1_rep	three_prime_UTR	27125644	27125840	.	-	.	Parent=Os06t0659200-01
Chr06	irgsp1_rep	three_prime_UTR	27123569	27123957	.	-	.	Parent=Os06t0659200-01
Chr06	irgsp1_rep	mRNA	27135555	27144857	.	-	.	ID=Os06t0659300-01;Name=Os06t0659300-01;Locus_id=Os06g0659300;Oryzabase Gene Symbol Synonym(s)=VLN3%2C OsVLN3%2C Os VLN3;Oryzabase Gene Name Synonym(s)=VILLIN3%2C VILLIN 3;Note=Similar to Actin filament bundling protein P-115-ABP.;Transcript_evidence=AK065502 (DDBJ%2C Best hit);ORF_evidence=Q7Y0V3 (UniProt);GO=Biological Process: cytoskeleton organization (GO:0007010),Molecular Function: actin binding (GO:0003779);InterPro=Villin headpiece (IPR003128),Gelsolin (IPR007122),Gelsolin domain (IPR007123);NIAS_FLcDNA=J013027C12;Oryzabase=20285;Expression=AK065502;TENOR=Os06t0659300-01;KEGG=Os06t0659300-01
Chr06	irgsp1_rep	five_prime_UTR	27144480	27144857	.	-	.	Parent=Os06t0659300-01
Chr06	irgsp1_rep	CDS	27144408	27144479	.	-	0	Parent=Os06t0659300-01
Chr06	irgsp1_rep	CDS	27143115	27143236	.	-	0	Parent=Os06t0659300-01
Chr06	irgsp1_rep	CDS	27142715	27142814	.	-	1	Parent=Os06t0659300-01
Chr06	irgsp1_rep	CDS	27142316	27142384	.	-	0	Parent=Os06t0659300-01
Chr06	irgsp1_rep	CDS	27141982	27142224	.	-	0	Parent=Os06t0659300-01
Chr06	irgsp1_rep	CDS	27141701	27141878	.	-	0	Parent=Os06t0659300-01
Chr06	irgsp1_rep	CDS	27141485	27141617	.	-	2	Parent=Os06t0659300-01
Chr06	irgsp1_rep	CDS	27141192	27141354	.	-	1	Parent=Os06t0659300-01
Chr06	irgsp1_rep	CDS	27140720	27140867	.	-	0	Parent=Os06t0659300-01
Chr06	irgsp1_rep	CDS	27140537	27140637	.	-	2	Parent=Os06t0659300-01
Chr06	irgsp1_rep	CDS	27140217	27140372	.	-	0	Parent=Os06t0659300-01
Chr06	irgsp1_rep	CDS	27139607	27139675	.	-	0	Parent=Os06t0659300-01
Chr06	irgsp1_rep	CDS	27139460	27139528	.	-	0	Parent=Os06t0659300-01
Chr06	irgsp1_rep	CDS	27139225	27139362	.	-	0	Parent=Os06t0659300-01
Chr06	irgsp1_rep	CDS	27138978	27139106	.	-	0	Parent=Os06t0659300-01
Chr06	irgsp1_rep	CDS	27138175	27138322	.	-	0	Parent=Os06t0659300-01
Chr06	irgsp1_rep	CDS	27138029	27138039	.	-	2	Parent=Os06t0659300-01
Chr06	irgsp1_rep	CDS	27137800	27137940	.	-	0	Parent=Os06t0659300-01
Chr06	irgsp1_rep	CDS	27137573	27137698	.	-	0	Parent=Os06t0659300-01
Chr06	irgsp1_rep	CDS	27137415	27137480	.	-	0	Parent=Os06t0659300-01
Chr06	irgsp1_rep	CDS	27136566	27136890	.	-	0	Parent=Os06t0659300-01
Chr06	irgsp1_rep	CDS	27136253	27136482	.	-	2	Parent=Os06t0659300-01
Chr06	irgsp1_rep	CDS	27136062	27136175	.	-	0	Parent=Os06t0659300-01
Chr06	irgsp1_rep	three_prime_UTR	27135555	27136061	.	-	.	Parent=Os06t0659300-01
Chr06	irgsp1_rep	mRNA	27148692	27150750	.	+	.	ID=Os06t0659400-01;Name=Os06t0659400-01;Locus_id=Os06g0659400;Oryzabase Gene Symbol Synonym(s)=OsTBL29%2C TBL29;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 29;Note=Protein of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=AK106651 (DDBJ%2C Best hit);ORF_evidence=A2YFU3 (UniProt);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=002-113-F10;Oryzabase=21484;Expression=AK106651;TENOR=Os06t0659400-01;KEGG=Os06t0659400-01
Chr06	irgsp1_rep	five_prime_UTR	27148692	27148780	.	+	.	Parent=Os06t0659400-01
Chr06	irgsp1_rep	CDS	27148781	27149286	.	+	0	Parent=Os06t0659400-01
Chr06	irgsp1_rep	CDS	27149372	27149564	.	+	1	Parent=Os06t0659400-01
Chr06	irgsp1_rep	CDS	27149640	27149833	.	+	0	Parent=Os06t0659400-01
Chr06	irgsp1_rep	CDS	27150032	27150190	.	+	1	Parent=Os06t0659400-01
Chr06	irgsp1_rep	CDS	27150271	27150610	.	+	1	Parent=Os06t0659400-01
Chr06	irgsp1_rep	three_prime_UTR	27150611	27150750	.	+	.	Parent=Os06t0659400-01
Chr06	irgsp1_rep	mRNA	27152706	27153945	.	+	.	ID=Os06t0659500-01;Name=Os06t0659500-01;Locus_id=Os06g0659500;CGSNL Gene Symbol=GRX18;CGSNL Gene Name=GLUTAREDOXIN 18;Oryzabase Gene Symbol Synonym(s)=OsGRX18;Oryzabase Gene Name Synonym(s)=glutaredoxin 18;Note=Similar to Glutaredoxin.;Transcript_evidence=AK058431 (DDBJ%2C Best hit);ORF_evidence=Q0DAE4 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin (IPR002109),Thioredoxin-like fold (IPR012336),Glutaredoxin subgroup (IPR014025);NIAS_FLcDNA=001-015-E11;Oryzabase=13588;Expression=AK058431;TENOR=Os06t0659500-01;KEGG=Os06t0659500-01
Chr06	irgsp1_rep	five_prime_UTR	27152706	27152706	.	+	.	Parent=Os06t0659500-01
Chr06	irgsp1_rep	CDS	27152707	27152770	.	+	0	Parent=Os06t0659500-01
Chr06	irgsp1_rep	CDS	27153527	27153625	.	+	2	Parent=Os06t0659500-01
Chr06	irgsp1_rep	CDS	27153718	27153788	.	+	2	Parent=Os06t0659500-01
Chr06	irgsp1_rep	three_prime_UTR	27153789	27153945	.	+	.	Parent=Os06t0659500-01
Chr06	irgsp1_rep	mRNA	27154687	27156204	.	-	.	ID=Os06t0659600-01;Name=Os06t0659600-01;Locus_id=Os06g0659600;Note=Hypothetical protein.;Transcript_evidence=AK110885 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-172-H01;Expression=AK110885;TENOR=Os06t0659600-01;KEGG=Os06t0659600-01
Chr06	irgsp1_rep	five_prime_UTR	27156159	27156204	.	-	.	Parent=Os06t0659600-01
Chr06	irgsp1_rep	CDS	27155073	27156158	.	-	0	Parent=Os06t0659600-01
Chr06	irgsp1_rep	three_prime_UTR	27154687	27155072	.	-	.	Parent=Os06t0659600-01
Chr06	irgsp1_rep	mRNA	27162266	27162609	.	-	.	ID=Os06t0659750-00;Name=Os06t0659750-00;Locus_id=Os06g0659750;Note=Non-protein coding transcript.;Transcript_evidence=CT836286 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os06t0659750-00
Chr06	irgsp1_rep	exon	27162266	27162609	.	-	.	Parent=Os06t0659750-00
Chr06	irgsp1_rep	mRNA	27162645	27163147	.	-	.	ID=Os06t0659800-00;Name=Os06t0659800-00;Locus_id=Os06g0659800;Note=Conserved hypothetical protein.;Transcript_evidence=EU941267 (DDBJ);ORF_evidence=NP_001058267.1 (RefSeq);Oryzabase=21952;TENOR=Os06t0659800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	27163131	27163147	.	-	.	Parent=Os06t0659800-00
Chr06	irgsp1_rep	CDS	27162645	27163130	.	-	0	Parent=Os06t0659800-00
Chr06	irgsp1_rep	mRNA	27200330	27200399	.	-	.	ID=Os06t0660000-00;Name=Os06t0660000-00;Locus_id=Os06g0660000;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0660000-00
Chr06	irgsp1_rep	exon	27200330	27200399	.	-	.	Parent=Os06t0660000-00
Chr06	irgsp1_rep	mRNA	27200808	27204611	.	+	.	ID=Os06t0660200-01;Name=Os06t0660200-01;Locus_id=Os06g0660200;RAP-DB Gene Symbol Synonym(s)=OsPIN2%2C PIN2;RAP-DB Gene Name Synonym(s)=PIN PROTEIN 2%2C PIN-FORMED 2;CGSNL Gene Symbol=LRA1;CGSNL Gene Name=LARGE ROOT ANGLE1;Oryzabase Gene Symbol Synonym(s)=OsPIN2%2C PIN2%2C OsLRA1;Oryzabase Gene Name Synonym(s)=PIN-FORMED 2%2C large root angle 1%2C AUXIN EFFLUX CARRIER COMPONENT 2-LIKE;Note=Auxin efflux transporter%2C Polar auxin transport%2C Control of canopy architecture;Transcript_evidence=AK101191;ORF_evidence=Q651V6;GO=Biological Process: auxin efflux (GO:0010315),Biological Process: transmembrane transport (GO:0055085),Molecular Function: auxin efflux transmembrane transporter activity (GO:0010329),Cellular Component: integral component of membrane (GO:0016021);InterPro=Membrane transport protein (IPR004776),Auxin efflux carrier%2C plant type (IPR014024),Auxin efflux carrier component 2 (IPR033526);NIAS_FLcDNA=J033030G03;Manual Curation=May 30%2C 2017;Literature_PMID=21777365,19825657;Oryzabase=8933;Expression=AK101191;TENOR=Os06t0660200-01;KEGG=Os06t0660200-01
Chr06	irgsp1_rep	five_prime_UTR	27200808	27200882	.	+	.	Parent=Os06t0660200-01
Chr06	irgsp1_rep	CDS	27200883	27201898	.	+	0	Parent=Os06t0660200-01
Chr06	irgsp1_rep	CDS	27201993	27202177	.	+	1	Parent=Os06t0660200-01
Chr06	irgsp1_rep	CDS	27202266	27202569	.	+	2	Parent=Os06t0660200-01
Chr06	irgsp1_rep	CDS	27203608	27203693	.	+	1	Parent=Os06t0660200-01
Chr06	irgsp1_rep	CDS	27203793	27203950	.	+	2	Parent=Os06t0660200-01
Chr06	irgsp1_rep	CDS	27204072	27204148	.	+	0	Parent=Os06t0660200-01
Chr06	irgsp1_rep	CDS	27204238	27204304	.	+	1	Parent=Os06t0660200-01
Chr06	irgsp1_rep	three_prime_UTR	27204305	27204611	.	+	.	Parent=Os06t0660200-01
Chr06	irgsp1_rep	mRNA	27200872	27204589	.	-	.	ID=Os06t0660300-00;Name=Os06t0660300-00;Locus_id=Os06g0660300;Note=Hypothetical protein.;Transcript_evidence=tplb0036f07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0660300-00
Chr06	irgsp1_rep	five_prime_UTR	27204238	27204589	.	-	.	Parent=Os06t0660300-00
Chr06	irgsp1_rep	five_prime_UTR	27204129	27204148	.	-	.	Parent=Os06t0660300-00
Chr06	irgsp1_rep	CDS	27204069	27204128	.	-	0	Parent=Os06t0660300-00
Chr06	irgsp1_rep	CDS	27203789	27203947	.	-	0	Parent=Os06t0660300-00
Chr06	irgsp1_rep	CDS	27203590	27203688	.	-	0	Parent=Os06t0660300-00
Chr06	irgsp1_rep	CDS	27202264	27202555	.	-	0	Parent=Os06t0660300-00
Chr06	irgsp1_rep	CDS	27201990	27202180	.	-	2	Parent=Os06t0660300-00
Chr06	irgsp1_rep	CDS	27201716	27201898	.	-	0	Parent=Os06t0660300-00
Chr06	irgsp1_rep	three_prime_UTR	27200872	27201715	.	-	.	Parent=Os06t0660300-00
Chr06	irgsp1_rep	mRNA	27209776	27210287	.	-	.	ID=Os06t0660400-01;Name=Os06t0660400-01;Locus_id=Os06g0660400;Note=Similar to OSIGBa0113I13.1 protein.;Transcript_evidence=AK111110 (DDBJ%2C Best hit);ORF_evidence=Q01KE6 (UniProt);NIAS_FLcDNA=002-176-A06;TENOR=Os06t0660400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	27210247	27210287	.	-	.	Parent=Os06t0660400-01
Chr06	irgsp1_rep	CDS	27209968	27210246	.	-	0	Parent=Os06t0660400-01
Chr06	irgsp1_rep	three_prime_UTR	27209776	27209967	.	-	.	Parent=Os06t0660400-01
Chr06	irgsp1_rep	mRNA	27216572	27217384	.	+	.	ID=Os06t0660625-00;Name=Os06t0660625-00;Locus_id=Os06g0660625;Note=Non-protein coding transcript.;Transcript_evidence=BT019088 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0660625-00
Chr06	irgsp1_rep	exon	27216572	27216889	.	+	.	Parent=Os06t0660625-00
Chr06	irgsp1_rep	exon	27217003	27217227	.	+	.	Parent=Os06t0660625-00
Chr06	irgsp1_rep	exon	27217297	27217384	.	+	.	Parent=Os06t0660625-00
Chr06	irgsp1_rep	mRNA	27216878	27217489	.	-	.	ID=Os06t0660650-00;Name=Os06t0660650-00;Locus_id=Os06g0660650;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FQC1 (UniProt);TENOR=Os06t0660650-00;KEGG=Os06t0660650-00
Chr06	irgsp1_rep	CDS	27217288	27217489	.	-	0	Parent=Os06t0660650-00
Chr06	irgsp1_rep	CDS	27217025	27217221	.	-	2	Parent=Os06t0660650-00
Chr06	irgsp1_rep	CDS	27216878	27216913	.	-	0	Parent=Os06t0660650-00
Chr06	irgsp1_rep	mRNA	27219564	27222979	.	+	.	ID=Os06t0660700-01;Name=Os06t0660700-01;Locus_id=Os06g0660700;CGSNL Gene Symbol=UBC33;CGSNL Gene Name=UBIQUITIN-CONJUGATING ENZYME 33;Oryzabase Gene Symbol Synonym(s)=OsUBC33;Oryzabase Gene Name Synonym(s)=Ubiquitin-conjugating enzyme 33;Note=Similar to Ubiquitin carrier protein.;Transcript_evidence=AK058614 (DDBJ%2C Best hit);ORF_evidence=A3BEA2 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135),Ubiquitin-conjugating enzyme%2C active site (IPR023313);NIAS_FLcDNA=001-018-B01;Oryzabase=19568;TENOR=Os06t0660700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	27219564	27219886	.	+	.	Parent=Os06t0660700-01
Chr06	irgsp1_rep	CDS	27219887	27219891	.	+	0	Parent=Os06t0660700-01
Chr06	irgsp1_rep	CDS	27221296	27221383	.	+	1	Parent=Os06t0660700-01
Chr06	irgsp1_rep	CDS	27221506	27221650	.	+	0	Parent=Os06t0660700-01
Chr06	irgsp1_rep	CDS	27221802	27221879	.	+	2	Parent=Os06t0660700-01
Chr06	irgsp1_rep	CDS	27221975	27222087	.	+	2	Parent=Os06t0660700-01
Chr06	irgsp1_rep	CDS	27222190	27222293	.	+	0	Parent=Os06t0660700-01
Chr06	irgsp1_rep	CDS	27222456	27222771	.	+	1	Parent=Os06t0660700-01
Chr06	irgsp1_rep	three_prime_UTR	27222772	27222979	.	+	.	Parent=Os06t0660700-01
Chr06	irgsp1_rep	mRNA	27219602	27222979	.	+	.	ID=Os06t0660700-02;Name=Os06t0660700-02;Locus_id=Os06g0660700;CGSNL Gene Symbol=UBC33;CGSNL Gene Name=UBIQUITIN-CONJUGATING ENZYME 33;Oryzabase Gene Symbol Synonym(s)=OsUBC33;Oryzabase Gene Name Synonym(s)=Ubiquitin-conjugating enzyme 33;Note=Similar to Ubiquitin carrier protein.;Transcript_evidence=AK121998 (DDBJ%2C Best hit);ORF_evidence=A3BEA2 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135),Ubiquitin-conjugating enzyme%2C active site (IPR023313);NIAS_FLcDNA=J033110E10;Oryzabase=19568;TENOR=Os06t0660700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	27219602	27219886	.	+	.	Parent=Os06t0660700-02
Chr06	irgsp1_rep	CDS	27219887	27219891	.	+	0	Parent=Os06t0660700-02
Chr06	irgsp1_rep	CDS	27221296	27221383	.	+	1	Parent=Os06t0660700-02
Chr06	irgsp1_rep	CDS	27221506	27221650	.	+	0	Parent=Os06t0660700-02
Chr06	irgsp1_rep	CDS	27221802	27221879	.	+	2	Parent=Os06t0660700-02
Chr06	irgsp1_rep	CDS	27221975	27222087	.	+	2	Parent=Os06t0660700-02
Chr06	irgsp1_rep	CDS	27222190	27222293	.	+	0	Parent=Os06t0660700-02
Chr06	irgsp1_rep	CDS	27222456	27222771	.	+	1	Parent=Os06t0660700-02
Chr06	irgsp1_rep	three_prime_UTR	27222772	27222979	.	+	.	Parent=Os06t0660700-02
Chr06	irgsp1_rep	mRNA	27231460	27232940	.	+	.	ID=Os06t0660800-01;Name=Os06t0660800-01;Locus_id=Os06g0660800;Note=Protein kinase domain containing protein.;Transcript_evidence=AK242085 (DDBJ%2C Best hit);ORF_evidence=C6ZRT5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J075140H05;TENOR=Os06t0660800-01;KEGG=Os06t0660800-01
Chr06	irgsp1_rep	CDS	27231460	27231570	.	+	0	Parent=Os06t0660800-01
Chr06	irgsp1_rep	CDS	27231975	27232114	.	+	0	Parent=Os06t0660800-01
Chr06	irgsp1_rep	CDS	27232264	27232420	.	+	1	Parent=Os06t0660800-01
Chr06	irgsp1_rep	CDS	27232577	27232660	.	+	0	Parent=Os06t0660800-01
Chr06	irgsp1_rep	three_prime_UTR	27232661	27232940	.	+	.	Parent=Os06t0660800-01
Chr06	irgsp1_rep	mRNA	27242823	27247637	.	-	.	ID=Os06t0661000-01;Name=Os06t0661000-01;Locus_id=Os06g0661000;Note=Zinc finger%2C CCHC-type domain containing protein.;Transcript_evidence=AK103669 (DDBJ%2C Best hit);ORF_evidence=Q7FAF2 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Transposase%2C MuDR%2C plant (IPR004332),Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);NIAS_FLcDNA=J033135M01;TENOR=Os06t0661000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	27247548	27247637	.	-	.	Parent=Os06t0661000-01
Chr06	irgsp1_rep	five_prime_UTR	27246881	27246958	.	-	.	Parent=Os06t0661000-01
Chr06	irgsp1_rep	CDS	27246861	27246880	.	-	0	Parent=Os06t0661000-01
Chr06	irgsp1_rep	CDS	27246226	27246302	.	-	1	Parent=Os06t0661000-01
Chr06	irgsp1_rep	CDS	27243051	27245791	.	-	2	Parent=Os06t0661000-01
Chr06	irgsp1_rep	three_prime_UTR	27242823	27243050	.	-	.	Parent=Os06t0661000-01
Chr06	irgsp1_rep	mRNA	27250564	27251084	.	+	.	ID=Os06t0661100-01;Name=Os06t0661100-01;Locus_id=Os06g0661100;Note=Hypothetical gene.;Transcript_evidence=AK058247 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-012-B04;Expression=AK058247;TENOR=Os06t0661100-01;KEGG=Os06t0661100-01
Chr06	irgsp1_rep	five_prime_UTR	27250564	27250565	.	+	.	Parent=Os06t0661100-01
Chr06	irgsp1_rep	CDS	27250566	27250934	.	+	0	Parent=Os06t0661100-01
Chr06	irgsp1_rep	three_prime_UTR	27250935	27251084	.	+	.	Parent=Os06t0661100-01
Chr06	irgsp1_rep	mRNA	27253336	27254108	.	+	.	ID=Os06t0661200-00;Name=Os06t0661200-00;Locus_id=Os06g0661200;Oryzabase Gene Symbol Synonym(s)=OsBBX21%2C BBX21;Oryzabase Gene Name Synonym(s)=B-box-containing protein 21;Note=Similar to B-box zinc finger family protein.;Transcript_evidence=tplb0012h23 (Wheat FLcDNA);ORF_evidence=NP_001147455.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C B-box (IPR000315);Oryzabase=11651;TENOR=Os06t0661200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	27253336	27253382	.	+	.	Parent=Os06t0661200-00
Chr06	irgsp1_rep	CDS	27253383	27254108	.	+	0	Parent=Os06t0661200-00
Chr06	irgsp1_rep	mRNA	27254694	27260171	.	-	.	ID=Os06t0661300-01;Name=Os06t0661300-01;Locus_id=Os06g0661300;Note=Non-protein coding transcript.;Transcript_evidence=AK102432 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J033093I05;TENOR=Os06t0661300-01
Chr06	irgsp1_rep	exon	27259958	27260171	.	-	.	Parent=Os06t0661300-01
Chr06	irgsp1_rep	exon	27254694	27255176	.	-	.	Parent=Os06t0661300-01
Chr06	irgsp1_rep	mRNA	27257416	27261248	.	+	.	ID=Os06t0661400-01;Name=Os06t0661400-01;Locus_id=Os06g0661400;Oryzabase Gene Symbol Synonym(s)=OsSTA176;Note=Similar to clathrin assembly protein.;Transcript_evidence=AK106992 (DDBJ%2C Best hit);ORF_evidence=NP_001151036.1 (RefSeq);GO=Biological Process: clathrin coat assembly (GO:0048268),Cellular Component: clathrin coat (GO:0030118),Molecular Function: phospholipid binding (GO:0005543),Molecular Function: 1-phosphatidylinositol binding (GO:0005545),Molecular Function: clathrin binding (GO:0030276);InterPro=ENTH/VHS (IPR008942),ANTH (IPR011417),Epsin-like%2C N-terminal (IPR013809),Clathrin adaptor%2C phosphoinositide-binding%2C GAT-like (IPR014712);NIAS_FLcDNA=002-120-B03;Oryzabase=19459;TENOR=Os06t0661400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	27257416	27257456	.	+	.	Parent=Os06t0661400-01
Chr06	irgsp1_rep	CDS	27257457	27257543	.	+	0	Parent=Os06t0661400-01
Chr06	irgsp1_rep	CDS	27257690	27257759	.	+	0	Parent=Os06t0661400-01
Chr06	irgsp1_rep	CDS	27257889	27257986	.	+	2	Parent=Os06t0661400-01
Chr06	irgsp1_rep	CDS	27258157	27258295	.	+	0	Parent=Os06t0661400-01
Chr06	irgsp1_rep	CDS	27258385	27258512	.	+	2	Parent=Os06t0661400-01
Chr06	irgsp1_rep	CDS	27258621	27258713	.	+	0	Parent=Os06t0661400-01
Chr06	irgsp1_rep	CDS	27258797	27258847	.	+	0	Parent=Os06t0661400-01
Chr06	irgsp1_rep	CDS	27258957	27259019	.	+	0	Parent=Os06t0661400-01
Chr06	irgsp1_rep	CDS	27259116	27259139	.	+	0	Parent=Os06t0661400-01
Chr06	irgsp1_rep	three_prime_UTR	27259140	27259182	.	+	.	Parent=Os06t0661400-01
Chr06	irgsp1_rep	three_prime_UTR	27259289	27259369	.	+	.	Parent=Os06t0661400-01
Chr06	irgsp1_rep	three_prime_UTR	27259694	27259771	.	+	.	Parent=Os06t0661400-01
Chr06	irgsp1_rep	three_prime_UTR	27259870	27260046	.	+	.	Parent=Os06t0661400-01
Chr06	irgsp1_rep	three_prime_UTR	27260119	27260197	.	+	.	Parent=Os06t0661400-01
Chr06	irgsp1_rep	three_prime_UTR	27260404	27260522	.	+	.	Parent=Os06t0661400-01
Chr06	irgsp1_rep	three_prime_UTR	27260681	27261248	.	+	.	Parent=Os06t0661400-01
Chr06	irgsp1_rep	mRNA	27261311	27262594	.	-	.	ID=Os06t0661500-01;Name=Os06t0661500-01;Locus_id=Os06g0661500;Note=Conserved hypothetical protein.;Transcript_evidence=AK099401 (DDBJ%2C Best hit);ORF_evidence=NP_001145567.1 (RefSeq);NIAS_FLcDNA=J013001E16;Expression=AK099401;TENOR=Os06t0661500-01;KEGG=Os06t0661500-01
Chr06	irgsp1_rep	five_prime_UTR	27262507	27262594	.	-	.	Parent=Os06t0661500-01
Chr06	irgsp1_rep	CDS	27262050	27262506	.	-	0	Parent=Os06t0661500-01
Chr06	irgsp1_rep	CDS	27261540	27261595	.	-	2	Parent=Os06t0661500-01
Chr06	irgsp1_rep	three_prime_UTR	27261311	27261539	.	-	.	Parent=Os06t0661500-01
Chr06	irgsp1_rep	mRNA	27262815	27264826	.	+	.	ID=Os06t0661600-01;Name=Os06t0661600-01;Locus_id=Os06g0661600;Note=Zinc finger%2C DPH-type domain containing protein.;Transcript_evidence=AK068205 (DDBJ%2C Best hit);ORF_evidence=NP_001152674.1 (RefSeq);InterPro=Zinc finger%2C DPH-type (IPR007872);NIAS_FLcDNA=J013148O09;Expression=AK068205;TENOR=Os06t0661600-01;KEGG=Os06t0661600-01
Chr06	irgsp1_rep	five_prime_UTR	27262815	27262909	.	+	.	Parent=Os06t0661600-01
Chr06	irgsp1_rep	CDS	27262910	27263155	.	+	0	Parent=Os06t0661600-01
Chr06	irgsp1_rep	three_prime_UTR	27263156	27263159	.	+	.	Parent=Os06t0661600-01
Chr06	irgsp1_rep	three_prime_UTR	27264641	27264826	.	+	.	Parent=Os06t0661600-01
Chr06	irgsp1_rep	mRNA	27265418	27269905	.	-	.	ID=Os06t0661700-01;Name=Os06t0661700-01;Locus_id=Os06g0661700;Note=Hypothetical conserved gene.;Transcript_evidence=AK067348 (DDBJ%2C Best hit);ORF_evidence=A2YFV7 (UniProt);GO=Biological Process: regulation of Rab GTPase activity (GO:0032313),Cellular Component: intracellular (GO:0005622),Molecular Function: Rab GTPase activator activity (GO:0005097);InterPro=Rab-GAP/TBC domain (IPR000195);NIAS_FLcDNA=J013105D20;Expression=AK067348;TENOR=Os06t0661700-01;KEGG=Os06t0661700-01
Chr06	irgsp1_rep	five_prime_UTR	27269685	27269905	.	-	.	Parent=Os06t0661700-01
Chr06	irgsp1_rep	CDS	27269548	27269684	.	-	0	Parent=Os06t0661700-01
Chr06	irgsp1_rep	CDS	27268965	27269068	.	-	1	Parent=Os06t0661700-01
Chr06	irgsp1_rep	CDS	27268259	27268435	.	-	2	Parent=Os06t0661700-01
Chr06	irgsp1_rep	CDS	27266228	27267900	.	-	2	Parent=Os06t0661700-01
Chr06	irgsp1_rep	CDS	27265663	27265809	.	-	0	Parent=Os06t0661700-01
Chr06	irgsp1_rep	three_prime_UTR	27265418	27265662	.	-	.	Parent=Os06t0661700-01
Chr06	irgsp1_rep	mRNA	27265304	27269890	.	-	.	ID=Os06t0661700-02;Name=Os06t0661700-02;Locus_id=Os06g0661700;Note=RabGAP/TBC domain containing protein.;Transcript_evidence=AK066945 (DDBJ%2C Best hit);ORF_evidence=Q651U3 (UniProt);GO=Biological Process: regulation of Rab GTPase activity (GO:0032313),Cellular Component: intracellular (GO:0005622),Molecular Function: Rab GTPase activator activity (GO:0005097);InterPro=Rab-GAP/TBC domain (IPR000195);NIAS_FLcDNA=J013090G02;Expression=AK066945;TENOR=Os06t0661700-02;KEGG=Os06t0661700-02
Chr06	irgsp1_rep	five_prime_UTR	27269685	27269890	.	-	.	Parent=Os06t0661700-02
Chr06	irgsp1_rep	CDS	27269548	27269684	.	-	0	Parent=Os06t0661700-02
Chr06	irgsp1_rep	CDS	27268965	27269068	.	-	1	Parent=Os06t0661700-02
Chr06	irgsp1_rep	CDS	27268259	27268435	.	-	2	Parent=Os06t0661700-02
Chr06	irgsp1_rep	CDS	27266833	27267900	.	-	2	Parent=Os06t0661700-02
Chr06	irgsp1_rep	CDS	27266228	27266712	.	-	2	Parent=Os06t0661700-02
Chr06	irgsp1_rep	CDS	27265663	27265809	.	-	0	Parent=Os06t0661700-02
Chr06	irgsp1_rep	three_prime_UTR	27265304	27265662	.	-	.	Parent=Os06t0661700-02
Chr06	irgsp1_rep	mRNA	27265410	27269896	.	+	.	ID=Os06t0661733-00;Name=Os06t0661733-00;Locus_id=Os06g0661733;Note=Hypothetical protein.;Transcript_evidence=tplb0060h12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0661733-00
Chr06	irgsp1_rep	five_prime_UTR	27265410	27265787	.	+	.	Parent=Os06t0661733-00
Chr06	irgsp1_rep	five_prime_UTR	27266219	27267571	.	+	.	Parent=Os06t0661733-00
Chr06	irgsp1_rep	CDS	27267572	27267886	.	+	0	Parent=Os06t0661733-00
Chr06	irgsp1_rep	three_prime_UTR	27267887	27267917	.	+	.	Parent=Os06t0661733-00
Chr06	irgsp1_rep	three_prime_UTR	27268275	27268428	.	+	.	Parent=Os06t0661733-00
Chr06	irgsp1_rep	three_prime_UTR	27268956	27269066	.	+	.	Parent=Os06t0661733-00
Chr06	irgsp1_rep	three_prime_UTR	27269546	27269896	.	+	.	Parent=Os06t0661733-00
Chr06	irgsp1_rep	mRNA	27272157	27275123	.	+	.	ID=Os06t0661766-00;Name=Os06t0661766-00;Locus_id=Os06g0661766;Note=Hypothetical conserved gene.;Transcript_evidence=CT836224 (DDBJ%2C Best hit);ORF_evidence=B9FQC3 (UniProt);TENOR=Os06t0661766-00;KEGG=Os06t0661766-00
Chr06	irgsp1_rep	five_prime_UTR	27272157	27272299	.	+	.	Parent=Os06t0661766-00
Chr06	irgsp1_rep	five_prime_UTR	27273421	27273460	.	+	.	Parent=Os06t0661766-00
Chr06	irgsp1_rep	CDS	27273461	27273503	.	+	0	Parent=Os06t0661766-00
Chr06	irgsp1_rep	CDS	27273596	27273716	.	+	2	Parent=Os06t0661766-00
Chr06	irgsp1_rep	CDS	27274532	27274586	.	+	1	Parent=Os06t0661766-00
Chr06	irgsp1_rep	CDS	27274674	27274853	.	+	0	Parent=Os06t0661766-00
Chr06	irgsp1_rep	three_prime_UTR	27274854	27275123	.	+	.	Parent=Os06t0661766-00
Chr06	irgsp1_rep	mRNA	27275526	27278844	.	-	.	ID=Os06t0661800-01;Name=Os06t0661800-01;Locus_id=Os06g0661800;Oryzabase Gene Name Synonym(s)=cryptoChrome;Note=Similar to CryptoChrome DASH%2C chloroplastic/mitochondrial.;Transcript_evidence=AK102315 (DDBJ%2C Best hit);ORF_evidence=Q651U1 (UniProt);GO=Biological Process: DNA repair (GO:0006281),Molecular Function: DNA photolyase activity (GO:0003913);InterPro=CryptoChrome/DNA photolyase%2C class 1 (IPR002081),DNA photolyase%2C FAD-binding/CryptoChrome%2C C-terminal (IPR005101),DNA photolyase%2C N-terminal (IPR006050),CryptoChrome%2C DASH (IPR014133),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J033090F06;Oryzabase=21435;TENOR=Os06t0661800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	27278442	27278844	.	-	0	Parent=Os06t0661800-01
Chr06	irgsp1_rep	CDS	27278165	27278304	.	-	2	Parent=Os06t0661800-01
Chr06	irgsp1_rep	CDS	27277789	27278007	.	-	0	Parent=Os06t0661800-01
Chr06	irgsp1_rep	CDS	27277560	27277704	.	-	0	Parent=Os06t0661800-01
Chr06	irgsp1_rep	CDS	27277240	27277427	.	-	2	Parent=Os06t0661800-01
Chr06	irgsp1_rep	CDS	27277123	27277169	.	-	0	Parent=Os06t0661800-01
Chr06	irgsp1_rep	CDS	27276837	27276913	.	-	1	Parent=Os06t0661800-01
Chr06	irgsp1_rep	CDS	27276589	27276664	.	-	2	Parent=Os06t0661800-01
Chr06	irgsp1_rep	CDS	27276427	27276496	.	-	1	Parent=Os06t0661800-01
Chr06	irgsp1_rep	CDS	27276197	27276320	.	-	0	Parent=Os06t0661800-01
Chr06	irgsp1_rep	CDS	27275997	27276046	.	-	2	Parent=Os06t0661800-01
Chr06	irgsp1_rep	CDS	27275591	27275794	.	-	0	Parent=Os06t0661800-01
Chr06	irgsp1_rep	three_prime_UTR	27275526	27275590	.	-	.	Parent=Os06t0661800-01
Chr06	irgsp1_rep	mRNA	27275526	27278793	.	-	.	ID=Os06t0661800-02;Name=Os06t0661800-02;Locus_id=Os06g0661800;Oryzabase Gene Name Synonym(s)=cryptoChrome;Note=Similar to CryptoChrome dash (Fragment).;Transcript_evidence=AK072287 (DDBJ%2C Best hit);ORF_evidence=Q651U1 (UniProt);GO=Biological Process: DNA repair (GO:0006281),Molecular Function: DNA photolyase activity (GO:0003913);InterPro=CryptoChrome/DNA photolyase%2C class 1 (IPR002081),DNA photolyase%2C FAD-binding/CryptoChrome%2C C-terminal (IPR005101),DNA photolyase%2C N-terminal (IPR006050),CryptoChrome%2C DASH (IPR014133),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J023012C20;Oryzabase=21435;TENOR=Os06t0661800-02
Chr06	irgsp1_rep	five_prime_UTR	27278746	27278793	.	-	.	Parent=Os06t0661800-02
Chr06	irgsp1_rep	CDS	27278442	27278745	.	-	0	Parent=Os06t0661800-02
Chr06	irgsp1_rep	CDS	27278165	27278304	.	-	2	Parent=Os06t0661800-02
Chr06	irgsp1_rep	CDS	27277789	27278007	.	-	0	Parent=Os06t0661800-02
Chr06	irgsp1_rep	CDS	27277560	27277704	.	-	0	Parent=Os06t0661800-02
Chr06	irgsp1_rep	CDS	27277240	27277427	.	-	2	Parent=Os06t0661800-02
Chr06	irgsp1_rep	CDS	27277123	27277169	.	-	0	Parent=Os06t0661800-02
Chr06	irgsp1_rep	CDS	27276837	27276913	.	-	1	Parent=Os06t0661800-02
Chr06	irgsp1_rep	CDS	27276589	27276664	.	-	2	Parent=Os06t0661800-02
Chr06	irgsp1_rep	CDS	27276427	27276496	.	-	1	Parent=Os06t0661800-02
Chr06	irgsp1_rep	CDS	27276197	27276320	.	-	0	Parent=Os06t0661800-02
Chr06	irgsp1_rep	CDS	27275997	27276046	.	-	2	Parent=Os06t0661800-02
Chr06	irgsp1_rep	CDS	27275591	27275794	.	-	0	Parent=Os06t0661800-02
Chr06	irgsp1_rep	three_prime_UTR	27275526	27275590	.	-	.	Parent=Os06t0661800-02
Chr06	irgsp1_rep	mRNA	27279950	27284976	.	-	.	ID=Os06t0661900-01;Name=Os06t0661900-01;Locus_id=Os06g0661900;Note=Protein of unknown function DUF266%2C plant family protein.;Transcript_evidence=AK065329 (DDBJ%2C Best hit);ORF_evidence=Q01KD8 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: acetylglucosaminyltransferase activity (GO:0008375);InterPro=Glycosyl transferase%2C family 14 (IPR003406);NIAS_FLcDNA=J013000I02;Expression=AK065329;TENOR=Os06t0661900-01;KEGG=Os06t0661900-01
Chr06	irgsp1_rep	five_prime_UTR	27284653	27284976	.	-	.	Parent=Os06t0661900-01
Chr06	irgsp1_rep	five_prime_UTR	27283951	27284106	.	-	.	Parent=Os06t0661900-01
Chr06	irgsp1_rep	CDS	27283594	27283950	.	-	0	Parent=Os06t0661900-01
Chr06	irgsp1_rep	CDS	27282863	27282961	.	-	0	Parent=Os06t0661900-01
Chr06	irgsp1_rep	CDS	27282126	27282226	.	-	0	Parent=Os06t0661900-01
Chr06	irgsp1_rep	CDS	27281977	27282048	.	-	1	Parent=Os06t0661900-01
Chr06	irgsp1_rep	CDS	27281700	27281790	.	-	1	Parent=Os06t0661900-01
Chr06	irgsp1_rep	CDS	27281474	27281554	.	-	0	Parent=Os06t0661900-01
Chr06	irgsp1_rep	CDS	27281041	27281097	.	-	0	Parent=Os06t0661900-01
Chr06	irgsp1_rep	CDS	27280830	27280952	.	-	0	Parent=Os06t0661900-01
Chr06	irgsp1_rep	CDS	27280703	27280741	.	-	0	Parent=Os06t0661900-01
Chr06	irgsp1_rep	CDS	27280342	27280470	.	-	0	Parent=Os06t0661900-01
Chr06	irgsp1_rep	three_prime_UTR	27279950	27280341	.	-	.	Parent=Os06t0661900-01
Chr06	irgsp1_rep	mRNA	27286319	27292847	.	-	.	ID=Os06t0662000-01;Name=Os06t0662000-01;Locus_id=Os06g0662000;RAP-DB Gene Symbol Synonym(s)=PLS1%2C OsVHA-A%2C VHAA1%2C VHA-A1%2COsPLS1%2C OsPLS1/VHA-A1;RAP-DB Gene Name Synonym(s)=PREMATURE LEAF SENESCENCE 1%2C vacuolar H+-ATPase subunit A%2C vacuolar-type H+-ATPase subunit A1%2C premature leaf senescence 1;CGSNL Gene Symbol=PLS1;CGSNL Gene Name=PREMATURE LEAF SENESCENCE 1;Oryzabase Gene Symbol Synonym(s)=OsVHA-A%2C VHAA1%2C VHA-A1%2C OsPLS1%2C OsPSL1/VHA-A1;Oryzabase Gene Name Synonym(s)=vacuolar H+-ATPase subunit A%2C vacuolar-type H+-ATPase subunit A1%2C premature leaf senescence 1;Note=Vacuolar-type H+-ATPase subunit A1%2C Premature leaf senescence and seed dormancy%2C Regulation of stomatal aperture and density;Transcript_evidence=AK069821;ORF_evidence=Q651T8;GO=Biological Process: ATP hydrolysis coupled proton transport (GO:0015991),Biological Process: proton transport (GO:0015992),Biological Process: ATP metabolic process (GO:0046034),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C catalyzing transmembrane movement of substances (GO:0016820),Molecular Function: proton-transporting ATPase activity%2C rotational mechanism (GO:0046961),Cellular Component: proton-transporting two-sector ATPase complex%2C catalytic domain (GO:0033178),Cellular Component: proton-transporting V-type ATPase%2C V1 domain (GO:0033180);InterPro=V-type ATP synthase catalytic alpha chain (IPR022878),ATPase%2C V1 complex%2C subunit A (IPR005725),ATPase%2C F1 complex alpha/beta subunit%2C N-terminal domain (IPR004100),P-loop containing nucleoside triphosphate hydrolase (IPR027417),ATPsynthase alpha/beta subunit%2C N-terminal extension (IPR031686),ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C nucleotide-binding domain (IPR000194),ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C C-terminal (IPR000793),ATPase%2C F1 complex beta subunit/V1 complex%2C C-terminal (IPR024034),ATPase%2C alpha/beta subunit%2C nucleotide-binding domain%2C active site (IPR020003);NIAS_FLcDNA=J023028L13;Manual Curation=March 31%2C 2016;Literature_PMID=26994476,23894405;Oryzabase=13342;Expression=AK069821;TENOR=Os06t0662000-01;KEGG=Os06t0662000-01 (EC:3.6.3.14)
Chr06	irgsp1_rep	five_prime_UTR	27292702	27292847	.	-	.	Parent=Os06t0662000-01
Chr06	irgsp1_rep	CDS	27292633	27292701	.	-	0	Parent=Os06t0662000-01
Chr06	irgsp1_rep	CDS	27291935	27292061	.	-	0	Parent=Os06t0662000-01
Chr06	irgsp1_rep	CDS	27291774	27291829	.	-	2	Parent=Os06t0662000-01
Chr06	irgsp1_rep	CDS	27291624	27291680	.	-	0	Parent=Os06t0662000-01
Chr06	irgsp1_rep	CDS	27291421	27291532	.	-	0	Parent=Os06t0662000-01
Chr06	irgsp1_rep	CDS	27291290	27291327	.	-	2	Parent=Os06t0662000-01
Chr06	irgsp1_rep	CDS	27291056	27291157	.	-	0	Parent=Os06t0662000-01
Chr06	irgsp1_rep	CDS	27290904	27290960	.	-	0	Parent=Os06t0662000-01
Chr06	irgsp1_rep	CDS	27290752	27290823	.	-	0	Parent=Os06t0662000-01
Chr06	irgsp1_rep	CDS	27290517	27290618	.	-	0	Parent=Os06t0662000-01
Chr06	irgsp1_rep	CDS	27290211	27290406	.	-	0	Parent=Os06t0662000-01
Chr06	irgsp1_rep	CDS	27289542	27289648	.	-	2	Parent=Os06t0662000-01
Chr06	irgsp1_rep	CDS	27288870	27289064	.	-	0	Parent=Os06t0662000-01
Chr06	irgsp1_rep	CDS	27288683	27288769	.	-	0	Parent=Os06t0662000-01
Chr06	irgsp1_rep	CDS	27288500	27288604	.	-	0	Parent=Os06t0662000-01
Chr06	irgsp1_rep	CDS	27288140	27288237	.	-	0	Parent=Os06t0662000-01
Chr06	irgsp1_rep	CDS	27287954	27288032	.	-	1	Parent=Os06t0662000-01
Chr06	irgsp1_rep	CDS	27286834	27286922	.	-	0	Parent=Os06t0662000-01
Chr06	irgsp1_rep	CDS	27286623	27286737	.	-	1	Parent=Os06t0662000-01
Chr06	irgsp1_rep	three_prime_UTR	27286319	27286622	.	-	.	Parent=Os06t0662000-01
Chr06	irgsp1_rep	mRNA	27294072	27294875	.	+	.	ID=Os06t0662100-01;Name=Os06t0662100-01;Locus_id=Os06g0662100;Note=Non-protein coding transcript.;Transcript_evidence=AK121842 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J033101E08;TENOR=Os06t0662100-01
Chr06	irgsp1_rep	exon	27294072	27294875	.	+	.	Parent=Os06t0662100-01
Chr06	irgsp1_rep	mRNA	27295786	27296233	.	-	.	ID=Os06t0662150-01;Name=Os06t0662150-01;Locus_id=Os06g0662150;Note=Non-protein coding transcript.;Transcript_evidence=AK241891 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J075005B17;TENOR=Os06t0662150-01
Chr06	irgsp1_rep	exon	27295786	27296233	.	-	.	Parent=Os06t0662150-01
Chr06	irgsp1_rep	mRNA	27299164	27299276	.	+	.	ID=Os06t0662151-00;Name=Os06t0662151-00;Locus_id=Os06g0662151;Note=Non-protein coding transcript.;Transcript_evidence=CT836214 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os06t0662151-00
Chr06	irgsp1_rep	exon	27299164	27299276	.	+	.	Parent=Os06t0662151-00
Chr06	irgsp1_rep	mRNA	27299932	27302104	.	-	.	ID=Os06t0662200-01;Name=Os06t0662200-01;Locus_id=Os06g0662200;RAP-DB Gene Symbol Synonym(s)=OsbZIP52%2C OsbZIP52/RISBZ5%2C RISBZ5;RAP-DB Gene Name Synonym(s)=RICE SEED B-ZIPPER 5%2C b-ZIP transcription factor 52%2C rice seed b-Zipper 5;CGSNL Gene Symbol=RISBZ5;CGSNL Gene Name=RICE SEED B-ZIPPER 5;Oryzabase Gene Symbol Synonym(s)=OsbZIP52;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 52%2C rice seed b-Zipper 5;Note=Basic leucine zipper (bZIP) transcription factor%2C Negative regulator of cold and drought stress response;Transcript_evidence=AK065941;ORF_evidence=Q654B3;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700);InterPro=Basic-leucine zipper domain (IPR004827);NIAS_FLcDNA=J013049M10;Manual Curation=April 25%2C 2017;Literature_PMID=22189955;Oryzabase=10135;Expression=AK065941;TENOR=Os06t0662200-01;KEGG=Os06t0662200-01;Subcellular location=nucleus (GO:0005634)
Chr06	irgsp1_rep	five_prime_UTR	27302090	27302104	.	-	.	Parent=Os06t0662200-01
Chr06	irgsp1_rep	CDS	27301807	27302089	.	-	0	Parent=Os06t0662200-01
Chr06	irgsp1_rep	CDS	27301527	27301662	.	-	2	Parent=Os06t0662200-01
Chr06	irgsp1_rep	CDS	27301360	27301435	.	-	1	Parent=Os06t0662200-01
Chr06	irgsp1_rep	CDS	27301151	27301276	.	-	0	Parent=Os06t0662200-01
Chr06	irgsp1_rep	CDS	27300630	27300896	.	-	0	Parent=Os06t0662200-01
Chr06	irgsp1_rep	three_prime_UTR	27299932	27300629	.	-	.	Parent=Os06t0662200-01
Chr06	irgsp1_rep	mRNA	27303683	27304274	.	-	.	ID=Os06t0662225-00;Name=Os06t0662225-00;Locus_id=Os06g0662225;Note=Similar to OSIGBa0113K06.3 protein.;Transcript_evidence=BT065478 (DDBJ);ORF_evidence=Q01L14 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Pollen allergen Lol p2 (IPR005453),Pollen allergen/expansin%2C C-terminal (IPR007117);TENOR=Os06t0662225-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	27304269	27304274	.	-	.	Parent=Os06t0662225-00
Chr06	irgsp1_rep	CDS	27303870	27304268	.	-	0	Parent=Os06t0662225-00
Chr06	irgsp1_rep	three_prime_UTR	27303683	27303869	.	-	.	Parent=Os06t0662225-00
Chr06	irgsp1_rep	mRNA	27306728	27307341	.	-	.	ID=Os06t0662300-01;Name=Os06t0662300-01;Locus_id=Os06g0662300;Note=Pollen allergen Lol p2 family protein.;Transcript_evidence=AK121208 (DDBJ%2C Best hit);ORF_evidence=Q01L14 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Pollen allergen Lol p2 (IPR005453),Pollen allergen/expansin%2C C-terminal (IPR007117);NIAS_FLcDNA=J023088G10;Expression=AK121208;TENOR=Os06t0662300-01;KEGG=Os06t0662300-01
Chr06	irgsp1_rep	five_prime_UTR	27307338	27307341	.	-	.	Parent=Os06t0662300-01
Chr06	irgsp1_rep	CDS	27306981	27307337	.	-	0	Parent=Os06t0662300-01
Chr06	irgsp1_rep	three_prime_UTR	27306728	27306980	.	-	.	Parent=Os06t0662300-01
Chr06	irgsp1_rep	mRNA	27317251	27317604	.	-	.	ID=Os06t0662500-00;Name=Os06t0662500-00;Locus_id=Os06g0662500;Note=Similar to OSIGBa0113K06.3 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01L14 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Pollen allergen Lol p2 (IPR005453),Pollen allergen/expansin%2C C-terminal (IPR007117);TENOR=Os06t0662500-00;KEGG=Os06t0662500-00
Chr06	irgsp1_rep	CDS	27317251	27317604	.	-	0	Parent=Os06t0662500-00
Chr06	irgsp1_rep	mRNA	27319482	27322589	.	-	.	ID=Os06t0662550-01;Name=Os06t0662550-01;Locus_id=Os06g0662550;Note=Conserved hypothetical protein.;Transcript_evidence=AK241473 (DDBJ%2C Best hit);ORF_evidence=NP_001174728.1 (RefSeq);NIAS_FLcDNA=J065165I08;TENOR=Os06t0662550-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	27321791	27322589	.	-	.	Parent=Os06t0662550-01
Chr06	irgsp1_rep	CDS	27321611	27321790	.	-	0	Parent=Os06t0662550-01
Chr06	irgsp1_rep	three_prime_UTR	27319482	27321610	.	-	.	Parent=Os06t0662550-01
Chr06	irgsp1_rep	mRNA	27323992	27324345	.	-	.	ID=Os06t0662600-00;Name=Os06t0662600-00;Locus_id=Os06g0662600;Note=Pollen allergen Lol p2 family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01L14 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Pollen allergen Lol p2 (IPR005453),Pollen allergen/expansin%2C C-terminal (IPR007117);TENOR=Os06t0662600-00;KEGG=Os06t0662600-00
Chr06	irgsp1_rep	CDS	27323992	27324345	.	-	0	Parent=Os06t0662600-00
Chr06	irgsp1_rep	mRNA	27326254	27326881	.	-	.	ID=Os06t0662700-01;Name=Os06t0662700-01;Locus_id=Os06g0662700;Note=Pollen allergen Lol p2 family protein.;Transcript_evidence=AK120000 (DDBJ%2C Best hit);ORF_evidence=Q01L14 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Pollen allergen Lol p2 (IPR005453),Pollen allergen/expansin%2C C-terminal (IPR007117);NIAS_FLcDNA=002-184-H06;Expression=AK120000;TENOR=Os06t0662700-01;KEGG=Os06t0662700-01
Chr06	irgsp1_rep	five_prime_UTR	27326809	27326881	.	-	.	Parent=Os06t0662700-01
Chr06	irgsp1_rep	CDS	27326491	27326808	.	-	0	Parent=Os06t0662700-01
Chr06	irgsp1_rep	three_prime_UTR	27326254	27326490	.	-	.	Parent=Os06t0662700-01
Chr06	irgsp1_rep	mRNA	27330003	27330356	.	-	.	ID=Os06t0662850-00;Name=Os06t0662850-00;Locus_id=Os06g0662850;Note=Similar to OSIGBa0113K06.3 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01L14 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Pollen allergen Lol p2 (IPR005453),Pollen allergen/expansin%2C C-terminal (IPR007117);TENOR=Os06t0662850-00;KEGG=Os06t0662850-00
Chr06	irgsp1_rep	CDS	27330003	27330356	.	-	0	Parent=Os06t0662850-00
Chr06	irgsp1_rep	mRNA	27333660	27334013	.	-	.	ID=Os06t0662900-00;Name=Os06t0662900-00;Locus_id=Os06g0662900;Note=Similar to OSIGBa0113K06.3 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01L14 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Pollen allergen Lol p2 (IPR005453),Pollen allergen/expansin%2C C-terminal (IPR007117);TENOR=Os06t0662900-00;KEGG=Os06t0662900-00
Chr06	irgsp1_rep	CDS	27333660	27334013	.	-	0	Parent=Os06t0662900-00
Chr06	irgsp1_rep	mRNA	27335847	27339000	.	-	.	ID=Os06t0663000-00;Name=Os06t0663000-00;Locus_id=Os06g0663000;Oryzabase Gene Symbol Synonym(s)=OsSTA177;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3BEC5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=19460;TENOR=Os06t0663000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	27338694	27339000	.	-	0	Parent=Os06t0663000-00
Chr06	irgsp1_rep	CDS	27336690	27337409	.	-	2	Parent=Os06t0663000-00
Chr06	irgsp1_rep	CDS	27335847	27336586	.	-	2	Parent=Os06t0663000-00
Chr06	irgsp1_rep	mRNA	27341357	27345739	.	-	.	ID=Os06t0663100-01;Name=Os06t0663100-01;Locus_id=Os06g0663100;Note=Similar to Pseudouridylate synthase.;Transcript_evidence=AK242301 (DDBJ%2C Best hit);ORF_evidence=A3BEB6 (UniProt);GO=Biological Process: pseudouridine synthesis (GO:0001522),Biological Process: RNA modification (GO:0009451),Molecular Function: RNA binding (GO:0003723),Molecular Function: pseudouridine synthase activity (GO:0009982);InterPro=Pseudouridine synthase I%2C TruA (IPR001406),Pseudouridine synthase I%2C TruA%2C N-terminal (IPR020094),Pseudouridine synthase I%2C TruA%2C alpha/beta domain (IPR020097),Pseudouridine synthase%2C catalytic domain (IPR020103);NIAS_FLcDNA=J075192P18;TENOR=Os06t0663100-01;KEGG=Os06t0663100-01
Chr06	irgsp1_rep	CDS	27345600	27345739	.	-	0	Parent=Os06t0663100-01
Chr06	irgsp1_rep	CDS	27345373	27345490	.	-	1	Parent=Os06t0663100-01
Chr06	irgsp1_rep	CDS	27344653	27344837	.	-	0	Parent=Os06t0663100-01
Chr06	irgsp1_rep	CDS	27344373	27344523	.	-	1	Parent=Os06t0663100-01
Chr06	irgsp1_rep	three_prime_UTR	27343590	27344372	.	-	.	Parent=Os06t0663100-01
Chr06	irgsp1_rep	three_prime_UTR	27343178	27343425	.	-	.	Parent=Os06t0663100-01
Chr06	irgsp1_rep	three_prime_UTR	27342886	27342955	.	-	.	Parent=Os06t0663100-01
Chr06	irgsp1_rep	three_prime_UTR	27342402	27342467	.	-	.	Parent=Os06t0663100-01
Chr06	irgsp1_rep	three_prime_UTR	27341814	27342313	.	-	.	Parent=Os06t0663100-01
Chr06	irgsp1_rep	three_prime_UTR	27341357	27341733	.	-	.	Parent=Os06t0663100-01
Chr06	irgsp1_rep	mRNA	27363816	27369244	.	-	.	ID=Os06t0663200-01;Name=Os06t0663200-01;Locus_id=Os06g0663200;CGSNL Gene Symbol=RLCK211;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 211;Oryzabase Gene Symbol Synonym(s)=OsRLCK211;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 211;Note=Similar to Protein kinase APK1B%2C chloroplast precursor (EC 2.7.1.-).;Transcript_evidence=AK100479 (DDBJ%2C Best hit);ORF_evidence=NP_001150204.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023095H24;Oryzabase=18907;Expression=AK100479;TENOR=Os06t0663200-01;KEGG=Os06t0663200-01
Chr06	irgsp1_rep	five_prime_UTR	27368860	27369244	.	-	.	Parent=Os06t0663200-01
Chr06	irgsp1_rep	CDS	27368811	27368859	.	-	0	Parent=Os06t0663200-01
Chr06	irgsp1_rep	CDS	27367267	27367574	.	-	2	Parent=Os06t0663200-01
Chr06	irgsp1_rep	CDS	27366872	27367007	.	-	0	Parent=Os06t0663200-01
Chr06	irgsp1_rep	CDS	27365942	27366078	.	-	2	Parent=Os06t0663200-01
Chr06	irgsp1_rep	CDS	27365086	27365209	.	-	0	Parent=Os06t0663200-01
Chr06	irgsp1_rep	CDS	27364283	27364938	.	-	2	Parent=Os06t0663200-01
Chr06	irgsp1_rep	three_prime_UTR	27363816	27364282	.	-	.	Parent=Os06t0663200-01
Chr06	irgsp1_rep	mRNA	27374250	27378448	.	-	.	ID=Os06t0663300-00;Name=Os06t0663300-00;Locus_id=Os06g0663300;Note=Pollen allergen Lol p2 family protein.;Transcript_evidence=EU969853 (DDBJ);ORF_evidence=Q01L14 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Pollen allergen Lol p2 (IPR005453),Pollen allergen/expansin%2C C-terminal (IPR007117);TENOR=Os06t0663300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	27378401	27378448	.	-	.	Parent=Os06t0663300-00
Chr06	irgsp1_rep	CDS	27378047	27378400	.	-	0	Parent=Os06t0663300-00
Chr06	irgsp1_rep	three_prime_UTR	27378034	27378046	.	-	.	Parent=Os06t0663300-00
Chr06	irgsp1_rep	three_prime_UTR	27374250	27374719	.	-	.	Parent=Os06t0663300-00
Chr06	irgsp1_rep	mRNA	27384305	27386857	.	+	.	ID=Os06t0663400-01;Name=Os06t0663400-01;Locus_id=Os06g0663400;Oryzabase Gene Symbol Synonym(s)=OsDPK3;Oryzabase Gene Name Synonym(s)=dual-specificity protein kinase 3;Note=Serine/thronine protein kinase-like protein.;Transcript_evidence=AK121201 (DDBJ%2C Best hit);ORF_evidence=Q84U74 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J023087I11;Oryzabase=14414;Expression=AK121201;TENOR=Os06t0663400-01;KEGG=Os06t0663400-01
Chr06	irgsp1_rep	five_prime_UTR	27384305	27384494	.	+	.	Parent=Os06t0663400-01
Chr06	irgsp1_rep	five_prime_UTR	27384879	27384976	.	+	.	Parent=Os06t0663400-01
Chr06	irgsp1_rep	CDS	27384977	27385923	.	+	0	Parent=Os06t0663400-01
Chr06	irgsp1_rep	CDS	27386011	27386350	.	+	1	Parent=Os06t0663400-01
Chr06	irgsp1_rep	three_prime_UTR	27386351	27386857	.	+	.	Parent=Os06t0663400-01
Chr06	irgsp1_rep	mRNA	27384395	27386378	.	+	.	ID=Os06t0663400-02;Name=Os06t0663400-02;Locus_id=Os06g0663400;Oryzabase Gene Symbol Synonym(s)=OsDPK3;Oryzabase Gene Name Synonym(s)=dual-specificity protein kinase 3;Note=Serine/thronine protein kinase-like protein.;Transcript_evidence=AK112080 (DDBJ%2C Best hit);ORF_evidence=Q84U74 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=001-124-G06;Oryzabase=14414;Expression=AK112080;TENOR=Os06t0663400-02;KEGG=Os06t0663400-02
Chr06	irgsp1_rep	five_prime_UTR	27384395	27384494	.	+	.	Parent=Os06t0663400-02
Chr06	irgsp1_rep	five_prime_UTR	27384879	27384976	.	+	.	Parent=Os06t0663400-02
Chr06	irgsp1_rep	CDS	27384977	27385923	.	+	0	Parent=Os06t0663400-02
Chr06	irgsp1_rep	CDS	27386011	27386350	.	+	1	Parent=Os06t0663400-02
Chr06	irgsp1_rep	three_prime_UTR	27386351	27386378	.	+	.	Parent=Os06t0663400-02
Chr06	irgsp1_rep	mRNA	27384936	27386395	.	-	.	ID=Os06t0663450-00;Name=Os06t0663450-00;Locus_id=Os06g0663450;Note=Non-protein coding transcript.;Transcript_evidence=tplb0062i19 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os06t0663450-00
Chr06	irgsp1_rep	exon	27386011	27386395	.	-	.	Parent=Os06t0663450-00
Chr06	irgsp1_rep	exon	27384936	27385923	.	-	.	Parent=Os06t0663450-00
Chr06	irgsp1_rep	mRNA	27387616	27391161	.	-	.	ID=Os06t0663500-00;Name=Os06t0663500-00;Locus_id=Os06g0663500;CGSNL Gene Symbol=SPL11;CGSNL Gene Name=RICE SQUAMOSA PROMOTER-BINDING-LIKE 11;Oryzabase Gene Symbol Synonym(s)=OsSPL11;Oryzabase Gene Name Synonym(s)=Squamosa promoter-binding-like protein 11;Note=SBP domain containing protein.;Transcript_evidence=FP094509 (DDBJ);ORF_evidence=Q653Z5 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Transcription factor%2C SBP-box (IPR004333);Oryzabase=6894;TENOR=Os06t0663500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	27390824	27391161	.	-	0	Parent=Os06t0663500-00
Chr06	irgsp1_rep	CDS	27389906	27390042	.	-	1	Parent=Os06t0663500-00
Chr06	irgsp1_rep	CDS	27389206	27389424	.	-	2	Parent=Os06t0663500-00
Chr06	irgsp1_rep	CDS	27387881	27388218	.	-	2	Parent=Os06t0663500-00
Chr06	irgsp1_rep	three_prime_UTR	27387616	27387880	.	-	.	Parent=Os06t0663500-00
Chr06	irgsp1_rep	mRNA	27397716	27400410	.	-	.	ID=Os06t0663600-01;Name=Os06t0663600-01;Locus_id=Os06g0663600;Note=Endonuclease V family protein.;Transcript_evidence=AK100787 (DDBJ%2C Best hit);ORF_evidence=XP_002867312.1 (RefSeq);GO=Biological Process: DNA repair (GO:0006281),Molecular Function: endonuclease activity (GO:0004519);InterPro=Endonuclease V (IPR007581);NIAS_FLcDNA=J023120P09;Expression=AK100787;TENOR=Os06t0663600-01;KEGG=Os06t0663600-01
Chr06	irgsp1_rep	five_prime_UTR	27399962	27400410	.	-	.	Parent=Os06t0663600-01
Chr06	irgsp1_rep	CDS	27399888	27399961	.	-	0	Parent=Os06t0663600-01
Chr06	irgsp1_rep	CDS	27399537	27399813	.	-	1	Parent=Os06t0663600-01
Chr06	irgsp1_rep	CDS	27399072	27399134	.	-	0	Parent=Os06t0663600-01
Chr06	irgsp1_rep	CDS	27398734	27398773	.	-	0	Parent=Os06t0663600-01
Chr06	irgsp1_rep	CDS	27398306	27398469	.	-	2	Parent=Os06t0663600-01
Chr06	irgsp1_rep	three_prime_UTR	27398145	27398305	.	-	.	Parent=Os06t0663600-01
Chr06	irgsp1_rep	three_prime_UTR	27397903	27398031	.	-	.	Parent=Os06t0663600-01
Chr06	irgsp1_rep	three_prime_UTR	27397716	27397809	.	-	.	Parent=Os06t0663600-01
Chr06	irgsp1_rep	mRNA	27402525	27403746	.	-	.	ID=Os06t0663800-01;Name=Os06t0663800-01;Locus_id=Os06g0663800;Oryzabase Gene Symbol Synonym(s)=OsFKBP13;Oryzabase Gene Name Synonym(s)=FK506 binding protein 13;Note=Similar to FKBP-type peptidyl-prolyl cis-trans isomerase 3%2C chloroplast precursor (EC 5.2.1.8) (PPIase) (Rotamase) (AtFKBP13) (FK506 binding protein 1).;Transcript_evidence=AK105843 (DDBJ%2C Best hit);ORF_evidence=NP_001148233.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457);InterPro=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type%2C domain (IPR001179),Peptidyl-prolyl cis-trans isomerase%2C FKBP-type (IPR023566);NIAS_FLcDNA=001-203-F10;Oryzabase=10025;Expression=AK105843;TENOR=Os06t0663800-01;KEGG=Os06t0663800-01 (EC:5.2.1.8)
Chr06	irgsp1_rep	five_prime_UTR	27403669	27403746	.	-	.	Parent=Os06t0663800-01
Chr06	irgsp1_rep	CDS	27403315	27403668	.	-	0	Parent=Os06t0663800-01
Chr06	irgsp1_rep	CDS	27403118	27403210	.	-	0	Parent=Os06t0663800-01
Chr06	irgsp1_rep	CDS	27402903	27402963	.	-	0	Parent=Os06t0663800-01
Chr06	irgsp1_rep	CDS	27402614	27402762	.	-	2	Parent=Os06t0663800-01
Chr06	irgsp1_rep	three_prime_UTR	27402525	27402613	.	-	.	Parent=Os06t0663800-01
Chr06	irgsp1_rep	mRNA	27412678	27416427	.	+	.	ID=Os06t0663900-01;Name=Os06t0663900-01;Locus_id=Os06g0663900;CGSNL Gene Symbol=RLCK212;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 212;Oryzabase Gene Symbol Synonym(s)=OsRLCK212;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 212;Note=Similar to (RAP Annotation release2) Protein kinase-like domain containing protein.;Transcript_evidence=AK071785 (DDBJ%2C Best hit);ORF_evidence=B7F3Z7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J023111J08;Oryzabase=18908;Expression=AK071785;TENOR=Os06t0663900-01;KEGG=Os06t0663900-01
Chr06	irgsp1_rep	five_prime_UTR	27412678	27413158	.	+	.	Parent=Os06t0663900-01
Chr06	irgsp1_rep	CDS	27413159	27413183	.	+	0	Parent=Os06t0663900-01
Chr06	irgsp1_rep	CDS	27413390	27413437	.	+	2	Parent=Os06t0663900-01
Chr06	irgsp1_rep	CDS	27414292	27414927	.	+	2	Parent=Os06t0663900-01
Chr06	irgsp1_rep	CDS	27415391	27415645	.	+	2	Parent=Os06t0663900-01
Chr06	irgsp1_rep	CDS	27416095	27416201	.	+	2	Parent=Os06t0663900-01
Chr06	irgsp1_rep	three_prime_UTR	27416202	27416257	.	+	.	Parent=Os06t0663900-01
Chr06	irgsp1_rep	three_prime_UTR	27416356	27416427	.	+	.	Parent=Os06t0663900-01
Chr06	irgsp1_rep	mRNA	27412681	27417601	.	+	.	ID=Os06t0663900-02;Name=Os06t0663900-02;Locus_id=Os06g0663900;CGSNL Gene Symbol=RLCK212;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 212;Oryzabase Gene Symbol Synonym(s)=OsRLCK212;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 212;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK111631 (DDBJ%2C Best hit);ORF_evidence=B6U4H5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013119L23;Oryzabase=18908;Expression=AK111631;TENOR=Os06t0663900-02;KEGG=Os06t0663900-02
Chr06	irgsp1_rep	five_prime_UTR	27412681	27413158	.	+	.	Parent=Os06t0663900-02
Chr06	irgsp1_rep	CDS	27413159	27413183	.	+	0	Parent=Os06t0663900-02
Chr06	irgsp1_rep	CDS	27413390	27413437	.	+	2	Parent=Os06t0663900-02
Chr06	irgsp1_rep	CDS	27414292	27414927	.	+	2	Parent=Os06t0663900-02
Chr06	irgsp1_rep	CDS	27415391	27415645	.	+	2	Parent=Os06t0663900-02
Chr06	irgsp1_rep	CDS	27416103	27416257	.	+	2	Parent=Os06t0663900-02
Chr06	irgsp1_rep	CDS	27416356	27416435	.	+	0	Parent=Os06t0663900-02
Chr06	irgsp1_rep	CDS	27416543	27416678	.	+	1	Parent=Os06t0663900-02
Chr06	irgsp1_rep	CDS	27416880	27417029	.	+	0	Parent=Os06t0663900-02
Chr06	irgsp1_rep	CDS	27417126	27417293	.	+	0	Parent=Os06t0663900-02
Chr06	irgsp1_rep	three_prime_UTR	27417294	27417601	.	+	.	Parent=Os06t0663900-02
Chr06	irgsp1_rep	mRNA	27413186	27417442	.	+	.	ID=Os06t0663900-03;Name=Os06t0663900-03;Locus_id=Os06g0663900;CGSNL Gene Symbol=RLCK212;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 212;Oryzabase Gene Symbol Synonym(s)=OsRLCK212;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 212;Note=Similar to (RAP Annotation release2) Protein kinase-like domain containing protein.;Transcript_evidence=AK120152 (DDBJ%2C Best hit);ORF_evidence=B7F3Z7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013029P14;Oryzabase=18908;Expression=AK120152;TENOR=Os06t0663900-03;KEGG=Os06t0663900-03
Chr06	irgsp1_rep	five_prime_UTR	27413186	27413349	.	+	.	Parent=Os06t0663900-03
Chr06	irgsp1_rep	CDS	27413350	27413437	.	+	0	Parent=Os06t0663900-03
Chr06	irgsp1_rep	CDS	27414292	27414927	.	+	2	Parent=Os06t0663900-03
Chr06	irgsp1_rep	CDS	27415391	27415645	.	+	2	Parent=Os06t0663900-03
Chr06	irgsp1_rep	CDS	27416103	27416257	.	+	2	Parent=Os06t0663900-03
Chr06	irgsp1_rep	CDS	27416356	27416435	.	+	0	Parent=Os06t0663900-03
Chr06	irgsp1_rep	CDS	27416543	27416678	.	+	1	Parent=Os06t0663900-03
Chr06	irgsp1_rep	CDS	27416880	27417029	.	+	0	Parent=Os06t0663900-03
Chr06	irgsp1_rep	CDS	27417126	27417293	.	+	0	Parent=Os06t0663900-03
Chr06	irgsp1_rep	three_prime_UTR	27417294	27417442	.	+	.	Parent=Os06t0663900-03
Chr06	irgsp1_rep	mRNA	27416717	27417492	.	+	.	ID=Os06t0663900-04;Name=Os06t0663900-04;Locus_id=Os06g0663900;CGSNL Gene Symbol=RLCK212;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 212;Oryzabase Gene Symbol Synonym(s)=OsRLCK212;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 212;Note=Similar to (RAP Annotation release2) Protein kinase-like domain containing protein.;Transcript_evidence=AK059197 (DDBJ%2C Best hit);ORF_evidence=B7F3Z7 (UniProt);NIAS_FLcDNA=001-024-A05;Oryzabase=18908;Expression=AK059197;TENOR=Os06t0663900-04;KEGG=Os06t0663900-04
Chr06	irgsp1_rep	five_prime_UTR	27416717	27416879	.	+	.	Parent=Os06t0663900-04
Chr06	irgsp1_rep	CDS	27416880	27417068	.	+	0	Parent=Os06t0663900-04
Chr06	irgsp1_rep	three_prime_UTR	27417069	27417492	.	+	.	Parent=Os06t0663900-04
Chr06	irgsp1_rep	mRNA	27414193	27418088	.	-	.	ID=Os06t0664000-01;Name=Os06t0664000-01;Locus_id=Os06g0664000;Note=Hypothetical gene.;Transcript_evidence=AK063460 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-115-G11;Expression=AK063460;TENOR=Os06t0664000-01;KEGG=Os06t0664000-01
Chr06	irgsp1_rep	five_prime_UTR	27418087	27418088	.	-	.	Parent=Os06t0664000-01
Chr06	irgsp1_rep	CDS	27417769	27418086	.	-	0	Parent=Os06t0664000-01
Chr06	irgsp1_rep	three_prime_UTR	27417105	27417768	.	-	.	Parent=Os06t0664000-01
Chr06	irgsp1_rep	three_prime_UTR	27416834	27417015	.	-	.	Parent=Os06t0664000-01
Chr06	irgsp1_rep	three_prime_UTR	27414783	27414903	.	-	.	Parent=Os06t0664000-01
Chr06	irgsp1_rep	three_prime_UTR	27414193	27414689	.	-	.	Parent=Os06t0664000-01
Chr06	irgsp1_rep	mRNA	27425718	27427845	.	-	.	ID=Os06t0664100-01;Name=Os06t0664100-01;Locus_id=Os06g0664100;Note=Similar to Xaa-Pro aminopeptidase 1.;Transcript_evidence=AK062475 (DDBJ%2C Best hit);ORF_evidence=Q2R330 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Creatinase (IPR000587);NIAS_FLcDNA=001-103-F06;TENOR=Os06t0664100-01
Chr06	irgsp1_rep	five_prime_UTR	27427701	27427845	.	-	.	Parent=Os06t0664100-01
Chr06	irgsp1_rep	CDS	27427581	27427700	.	-	0	Parent=Os06t0664100-01
Chr06	irgsp1_rep	CDS	27427348	27427411	.	-	0	Parent=Os06t0664100-01
Chr06	irgsp1_rep	CDS	27426600	27426739	.	-	2	Parent=Os06t0664100-01
Chr06	irgsp1_rep	CDS	27425718	27425949	.	-	0	Parent=Os06t0664100-01
Chr06	irgsp1_rep	mRNA	27428901	27431107	.	-	.	ID=Os06t0664200-01;Name=Os06t0664200-01;Locus_id=Os06g0664200;Oryzabase Gene Name Synonym(s)=Fru-1%2C 6-bisphosphatase;Note=Inositol monophosphatase/Fructose-1%2C6-bisphosphatase domain containing protein.;Transcript_evidence=AK120722 (DDBJ%2C Best hit);ORF_evidence=NP_001147459.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: phosphoric ester hydrolase activity (GO:0042578);InterPro=Fructose-1%2C6-bisphosphatase class 1/Sedoheputulose-1%2C7-bisphosphatase (IPR000146);NIAS_FLcDNA=J023002G19;Oryzabase=12457;Expression=AK120722;TENOR=Os06t0664200-01;KEGG=Os06t0664200-01 (EC:3.1.3.11)
Chr06	irgsp1_rep	five_prime_UTR	27431097	27431107	.	-	.	Parent=Os06t0664200-01
Chr06	irgsp1_rep	CDS	27430689	27431096	.	-	0	Parent=Os06t0664200-01
Chr06	irgsp1_rep	CDS	27429876	27430272	.	-	0	Parent=Os06t0664200-01
Chr06	irgsp1_rep	CDS	27429160	27429560	.	-	2	Parent=Os06t0664200-01
Chr06	irgsp1_rep	three_prime_UTR	27428901	27429159	.	-	.	Parent=Os06t0664200-01
Chr06	irgsp1_rep	mRNA	27428890	27429154	.	-	.	ID=Os06t0664200-02;Name=Os06t0664200-02;Locus_id=Os06g0664200;Oryzabase Gene Name Synonym(s)=Fru-1%2C 6-bisphosphatase;Note=Hypothetical gene.;Transcript_evidence=AK058691 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-019-B04;Oryzabase=12457;TENOR=Os06t0664200-02
Chr06	irgsp1_rep	five_prime_UTR	27429141	27429154	.	-	.	Parent=Os06t0664200-02
Chr06	irgsp1_rep	CDS	27428890	27429140	.	-	0	Parent=Os06t0664200-02
Chr06	irgsp1_rep	mRNA	27433420	27440995	.	+	.	ID=Os06t0664300-01;Name=Os06t0664300-01;Locus_id=Os06g0664300;Note=Similar to Vacuolar sorting receptor 6 precursor (AtVSR6) (Epidermal growth factor receptor-like protein 6) (AtELP6) (BP80-like protein d) (AtBP80d).;Transcript_evidence=AK100655 (DDBJ%2C Best hit);ORF_evidence=NP_001152485.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Protease-associated domain%2C PA (IPR003137),EGF-like calcium-binding%2C conserved site (IPR018097);NIAS_FLcDNA=J023111G13;Expression=AK100655;TENOR=Os06t0664300-01;KEGG=Os06t0664300-01
Chr06	irgsp1_rep	five_prime_UTR	27433420	27433755	.	+	.	Parent=Os06t0664300-01
Chr06	irgsp1_rep	CDS	27433756	27434074	.	+	0	Parent=Os06t0664300-01
Chr06	irgsp1_rep	CDS	27435627	27436112	.	+	2	Parent=Os06t0664300-01
Chr06	irgsp1_rep	CDS	27437142	27437363	.	+	2	Parent=Os06t0664300-01
Chr06	irgsp1_rep	CDS	27438268	27438356	.	+	2	Parent=Os06t0664300-01
Chr06	irgsp1_rep	CDS	27438533	27438602	.	+	0	Parent=Os06t0664300-01
Chr06	irgsp1_rep	CDS	27438797	27438880	.	+	2	Parent=Os06t0664300-01
Chr06	irgsp1_rep	CDS	27438984	27439060	.	+	2	Parent=Os06t0664300-01
Chr06	irgsp1_rep	CDS	27439171	27439252	.	+	0	Parent=Os06t0664300-01
Chr06	irgsp1_rep	CDS	27439375	27439457	.	+	2	Parent=Os06t0664300-01
Chr06	irgsp1_rep	CDS	27439541	27439604	.	+	0	Parent=Os06t0664300-01
Chr06	irgsp1_rep	CDS	27439778	27439906	.	+	2	Parent=Os06t0664300-01
Chr06	irgsp1_rep	CDS	27440174	27440277	.	+	2	Parent=Os06t0664300-01
Chr06	irgsp1_rep	CDS	27440376	27440480	.	+	0	Parent=Os06t0664300-01
Chr06	irgsp1_rep	three_prime_UTR	27440481	27440481	.	+	.	Parent=Os06t0664300-01
Chr06	irgsp1_rep	three_prime_UTR	27440586	27440995	.	+	.	Parent=Os06t0664300-01
Chr06	irgsp1_rep	mRNA	27441352	27444862	.	-	.	ID=Os06t0664400-01;Name=Os06t0664400-01;Locus_id=Os06g0664400;Note=HMG-I and HMG-Y%2C DNA-binding domain containing protein.;Transcript_evidence=AK288023 (DDBJ%2C Best hit);ORF_evidence=NP_001174943.1 (RefSeq);NIAS_FLcDNA=J075127N02;TENOR=Os06t0664400-01;KEGG=Os06t0664400-01
Chr06	irgsp1_rep	five_prime_UTR	27444836	27444862	.	-	.	Parent=Os06t0664400-01
Chr06	irgsp1_rep	CDS	27443936	27444835	.	-	0	Parent=Os06t0664400-01
Chr06	irgsp1_rep	CDS	27443685	27443828	.	-	0	Parent=Os06t0664400-01
Chr06	irgsp1_rep	CDS	27442508	27442693	.	-	0	Parent=Os06t0664400-01
Chr06	irgsp1_rep	CDS	27441654	27441734	.	-	0	Parent=Os06t0664400-01
Chr06	irgsp1_rep	three_prime_UTR	27441352	27441653	.	-	.	Parent=Os06t0664400-01
Chr06	irgsp1_rep	mRNA	27456955	27459557	.	+	.	ID=Os06t0664800-01;Name=Os06t0664800-01;Locus_id=Os06g0664800;Note=Similar to Phosphate starvation regulator protein (Regulatory protein of P- starvation acclimation response Psr1).;Transcript_evidence=AK119588 (DDBJ%2C Best hit);ORF_evidence=NP_001150983.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Homeodomain-related (IPR012287);NIAS_FLcDNA=002-117-C12;Expression=AK119588;TENOR=Os06t0664800-01;KEGG=Os06t0664800-01
Chr06	irgsp1_rep	five_prime_UTR	27456955	27457153	.	+	.	Parent=Os06t0664800-01
Chr06	irgsp1_rep	five_prime_UTR	27457326	27457345	.	+	.	Parent=Os06t0664800-01
Chr06	irgsp1_rep	CDS	27457346	27457402	.	+	0	Parent=Os06t0664800-01
Chr06	irgsp1_rep	CDS	27457597	27457651	.	+	0	Parent=Os06t0664800-01
Chr06	irgsp1_rep	CDS	27457962	27458022	.	+	2	Parent=Os06t0664800-01
Chr06	irgsp1_rep	CDS	27458134	27458206	.	+	1	Parent=Os06t0664800-01
Chr06	irgsp1_rep	CDS	27458600	27459190	.	+	0	Parent=Os06t0664800-01
Chr06	irgsp1_rep	three_prime_UTR	27459191	27459557	.	+	.	Parent=Os06t0664800-01
Chr06	irgsp1_rep	mRNA	27462105	27463014	.	+	.	ID=Os06t0664900-00;Name=Os06t0664900-00;Locus_id=Os06g0664900;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q655Y5 (UniProt);TENOR=Os06t0664900-00
Chr06	irgsp1_rep	CDS	27462105	27462151	.	+	0	Parent=Os06t0664900-00
Chr06	irgsp1_rep	CDS	27462326	27462383	.	+	1	Parent=Os06t0664900-00
Chr06	irgsp1_rep	CDS	27462868	27463014	.	+	0	Parent=Os06t0664900-00
Chr06	irgsp1_rep	mRNA	27466365	27469715	.	+	.	ID=Os06t0665000-01;Name=Os06t0665000-01;Locus_id=Os06g0665000;Note=Protein of unknown function DUF284%2C transmembrane eukaryotic family protein.;Transcript_evidence=AK069711 (DDBJ%2C Best hit);ORF_evidence=B6T6G6 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Protein of unknown function DUF284%2C transmembrane eukaryotic (IPR005045);NIAS_FLcDNA=J023033B12;Oryzabase=17635;Expression=AK069711;TENOR=Os06t0665000-01;KEGG=Os06t0665000-01
Chr06	irgsp1_rep	five_prime_UTR	27466365	27466629	.	+	.	Parent=Os06t0665000-01
Chr06	irgsp1_rep	CDS	27466630	27466738	.	+	0	Parent=Os06t0665000-01
Chr06	irgsp1_rep	CDS	27467226	27467284	.	+	2	Parent=Os06t0665000-01
Chr06	irgsp1_rep	CDS	27467411	27467485	.	+	0	Parent=Os06t0665000-01
Chr06	irgsp1_rep	CDS	27467560	27467676	.	+	0	Parent=Os06t0665000-01
Chr06	irgsp1_rep	CDS	27467859	27467929	.	+	0	Parent=Os06t0665000-01
Chr06	irgsp1_rep	CDS	27468084	27468384	.	+	1	Parent=Os06t0665000-01
Chr06	irgsp1_rep	CDS	27468601	27468890	.	+	0	Parent=Os06t0665000-01
Chr06	irgsp1_rep	CDS	27469431	27469485	.	+	1	Parent=Os06t0665000-01
Chr06	irgsp1_rep	three_prime_UTR	27469486	27469715	.	+	.	Parent=Os06t0665000-01
Chr06	irgsp1_rep	mRNA	27466428	27469757	.	+	.	ID=Os06t0665000-02;Name=Os06t0665000-02;Locus_id=Os06g0665000;Note=Protein of unknown function DUF284%2C transmembrane eukaryotic family protein.;Transcript_evidence=AK104873 (DDBJ%2C Best hit);ORF_evidence=B6T6G6 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Protein of unknown function DUF284%2C transmembrane eukaryotic (IPR005045);NIAS_FLcDNA=001-044-C04;Oryzabase=17635;Expression=AK104873;TENOR=Os06t0665000-02;KEGG=Os06t0665000-02
Chr06	irgsp1_rep	five_prime_UTR	27466428	27466629	.	+	.	Parent=Os06t0665000-02
Chr06	irgsp1_rep	CDS	27466630	27466738	.	+	0	Parent=Os06t0665000-02
Chr06	irgsp1_rep	CDS	27467226	27467284	.	+	2	Parent=Os06t0665000-02
Chr06	irgsp1_rep	CDS	27467411	27467485	.	+	0	Parent=Os06t0665000-02
Chr06	irgsp1_rep	CDS	27467560	27467676	.	+	0	Parent=Os06t0665000-02
Chr06	irgsp1_rep	CDS	27467859	27467929	.	+	0	Parent=Os06t0665000-02
Chr06	irgsp1_rep	CDS	27468084	27468384	.	+	1	Parent=Os06t0665000-02
Chr06	irgsp1_rep	CDS	27468601	27468890	.	+	0	Parent=Os06t0665000-02
Chr06	irgsp1_rep	CDS	27469431	27469485	.	+	1	Parent=Os06t0665000-02
Chr06	irgsp1_rep	three_prime_UTR	27469486	27469757	.	+	.	Parent=Os06t0665000-02
Chr06	irgsp1_rep	mRNA	27469987	27471805	.	-	.	ID=Os06t0665100-01;Name=Os06t0665100-01;Locus_id=Os06g0665100;Note=Similar to Dreg-2 like protein.;Transcript_evidence=AK101330 (DDBJ%2C Best hit);ORF_evidence=NP_199286.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphoglycolate phosphatase activity (GO:0008967);InterPro=Haloacid dehalogenase-like hydrolase (IPR005834),HAD-superfamily hydrolase%2C subfamily IA%2C variant 1 (IPR006439),HAD-superfamily hydrolase%2C subfamily IA%2C REG-2-like (IPR011949),HAD-like domain (IPR023214);NIAS_FLcDNA=J033034G21;TENOR=Os06t0665100-01
Chr06	irgsp1_rep	five_prime_UTR	27471601	27471805	.	-	.	Parent=Os06t0665100-01
Chr06	irgsp1_rep	five_prime_UTR	27471308	27471327	.	-	.	Parent=Os06t0665100-01
Chr06	irgsp1_rep	CDS	27471050	27471307	.	-	0	Parent=Os06t0665100-01
Chr06	irgsp1_rep	CDS	27470741	27470947	.	-	0	Parent=Os06t0665100-01
Chr06	irgsp1_rep	CDS	27470313	27470633	.	-	0	Parent=Os06t0665100-01
Chr06	irgsp1_rep	three_prime_UTR	27469987	27470312	.	-	.	Parent=Os06t0665100-01
Chr06	irgsp1_rep	mRNA	27470000	27471752	.	-	.	ID=Os06t0665100-02;Name=Os06t0665100-02;Locus_id=Os06g0665100;Note=Similar to Dreg-2 like protein.;Transcript_evidence=AK060153 (DDBJ%2C Best hit);ORF_evidence=NP_199286.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphoglycolate phosphatase activity (GO:0008967);InterPro=Haloacid dehalogenase-like hydrolase (IPR005834),HAD-superfamily hydrolase%2C subfamily IA%2C variant 1 (IPR006439),HAD-superfamily hydrolase%2C subfamily IA%2C REG-2-like (IPR011949),HAD-like domain (IPR023214);NIAS_FLcDNA=006-310-E08;TENOR=Os06t0665100-02
Chr06	irgsp1_rep	five_prime_UTR	27471601	27471752	.	-	.	Parent=Os06t0665100-02
Chr06	irgsp1_rep	five_prime_UTR	27471308	27471327	.	-	.	Parent=Os06t0665100-02
Chr06	irgsp1_rep	CDS	27471050	27471307	.	-	0	Parent=Os06t0665100-02
Chr06	irgsp1_rep	CDS	27470741	27470947	.	-	0	Parent=Os06t0665100-02
Chr06	irgsp1_rep	CDS	27470313	27470633	.	-	0	Parent=Os06t0665100-02
Chr06	irgsp1_rep	three_prime_UTR	27470000	27470312	.	-	.	Parent=Os06t0665100-02
Chr06	irgsp1_rep	mRNA	27473607	27474251	.	-	.	ID=Os06t0665200-00;Name=Os06t0665200-00;Locus_id=Os06g0665200;Note=Similar to glycosyl hydrolase family protein 17.;Transcript_evidence=EU971814 (DDBJ);ORF_evidence=NP_201547.1 (RefSeq);InterPro=X8 (IPR012946);TENOR=Os06t0665200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	27473607	27474251	.	-	0	Parent=Os06t0665200-00
Chr06	irgsp1_rep	mRNA	27480082	27481453	.	-	.	ID=Os06t0665400-01;Name=Os06t0665400-01;Locus_id=Os06g0665400;RAP-DB Gene Symbol Synonym(s)=APO1%2C apo1(t)%2C apo1%2C SCM2%2C SCM2/APO1%2C OsFbox321%2C Os_F0393;RAP-DB Gene Name Synonym(s)=ABERRANT PANICLE ORGANIZATION 1%2C aberrant panicle organization 1%2C aberrant panicle organization-1%2C STRONG CULM 2%2C STRONG CULM2%2C F-box protein 321;CGSNL Gene Symbol=APO1;CGSNL Gene Name=ABERRANT PANICLE ORGANIZATION 1;Oryzabase Gene Symbol Synonym(s)=apo1(t)%2C apo1%2C SCM2%2C SCM2/APO1%2C OsFbox321%2C Os_F0393%2C Pbl6/APO1%2C Pbl6%2C OsPbl6;Oryzabase Gene Name Synonym(s)=aberrant panicle organization 1%2C aberrant panicle organization-1%2C STRONG CULM 2%2C STRONG CULM2%2C F-box protein 321%2C PRIMARY BRANCH LENGTH6%2C PRIMARY BRANCH LENGTH 6;Note=F-box protein%2C Inflorescence form%2C Lodging resistance and grain yield;Transcript_evidence=AB292777 (DDBJ);ORF_evidence=Q655Y0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Galactose oxidase/kelch%2C beta-propeller (IPR011043),Galactose oxidase%2C beta-propeller (IPR015916);Manual Curation=July 17%2C 2009;Literature_PMID=17666027,19386809,21119645;Oryzabase=2123;TENOR=Os06t0665400-01
Chr06	irgsp1_rep	CDS	27480750	27481453	.	-	0	Parent=Os06t0665400-01
Chr06	irgsp1_rep	CDS	27480082	27480667	.	-	1	Parent=Os06t0665400-01
Chr06	irgsp1_rep	mRNA	27495307	27499531	.	-	.	ID=Os06t0665500-01;Name=Os06t0665500-01;Locus_id=Os06g0665500;CGSNL Gene Symbol=AAH;CGSNL Gene Name=ALLANTOATE AMIDOHYDROLASE;Oryzabase Gene Symbol Synonym(s)=OsAAH;Oryzabase Gene Name Synonym(s)=allantoate amidohydrolase;Note=Peptidase M20 domain containing protein.;Transcript_evidence=AK073262 (DDBJ%2C Best hit);ORF_evidence=NP_001151245.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Biological Process: metabolic process (GO:0008152),Molecular Function: metallopeptidase activity (GO:0008237),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds%2C in linear amidines (GO:0016813);InterPro=ArgE/DapE/ACY1/CPG2/YscS%2C conserved site (IPR001261),Peptidase M20 (IPR002933),Amidase%2C hydantoinase/carbamoylase (IPR010158),Peptidase M20%2C dimerisation (IPR011650);NIAS_FLcDNA=J033026H23;Oryzabase=20255;Expression=AK073262;TENOR=Os06t0665500-01;KEGG=Os06t0665500-01
Chr06	irgsp1_rep	five_prime_UTR	27499472	27499531	.	-	.	Parent=Os06t0665500-01
Chr06	irgsp1_rep	CDS	27499381	27499471	.	-	0	Parent=Os06t0665500-01
Chr06	irgsp1_rep	CDS	27499182	27499264	.	-	2	Parent=Os06t0665500-01
Chr06	irgsp1_rep	CDS	27498345	27498448	.	-	0	Parent=Os06t0665500-01
Chr06	irgsp1_rep	CDS	27498178	27498262	.	-	1	Parent=Os06t0665500-01
Chr06	irgsp1_rep	CDS	27497960	27498076	.	-	0	Parent=Os06t0665500-01
Chr06	irgsp1_rep	CDS	27497363	27497472	.	-	0	Parent=Os06t0665500-01
Chr06	irgsp1_rep	CDS	27497172	27497277	.	-	1	Parent=Os06t0665500-01
Chr06	irgsp1_rep	CDS	27496995	27497081	.	-	0	Parent=Os06t0665500-01
Chr06	irgsp1_rep	CDS	27496086	27496325	.	-	0	Parent=Os06t0665500-01
Chr06	irgsp1_rep	CDS	27495857	27495982	.	-	0	Parent=Os06t0665500-01
Chr06	irgsp1_rep	CDS	27495423	27495749	.	-	0	Parent=Os06t0665500-01
Chr06	irgsp1_rep	three_prime_UTR	27495307	27495422	.	-	.	Parent=Os06t0665500-01
Chr06	irgsp1_rep	mRNA	27517100	27523604	.	-	.	ID=Os06t0665800-01;Name=Os06t0665800-01;Locus_id=Os06g0665800;CGSNL Gene Symbol=HMA9;CGSNL Gene Name=HEAVY METAL ATPASE 9;Oryzabase Gene Symbol Synonym(s)=OsHMA9%2C oshma9-1%2C oshma9-2%2C HMA9%2C OsHMP33%2C HMP33;Oryzabase Gene Name Synonym(s)=Oryza sativa heavy metal ATPase 9%2C HEAVY METAL ATPASE 9%2C heavy metal P-Type ATPase 9%2C Heavy metal-associated protein 33;Note=Similar to heavy metal ATPase.;Transcript_evidence=AK241795 (DDBJ%2C Best hit);ORF_evidence=F2DDZ3 (UniProt);GO=Biological Process: ATP biosynthetic process (GO:0006754),Biological Process: cation transport (GO:0006812),Biological Process: copper ion transport (GO:0006825),Biological Process: metabolic process (GO:0008152),Biological Process: metal ion transport (GO:0030001),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: copper ion binding (GO:0005507),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662),Molecular Function: metal ion binding (GO:0046872);InterPro=ATPase%2C P-type%2C H+ transporting proton pump (IPR000695),ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),Haloacid dehalogenase-like hydrolase (IPR005834),Heavy metal-associated domain%2C HMA (IPR006121),Heavy metal-associated domain%2C copper ion-binding (IPR006122),ATPase%2C P-type%2C heavy metal translocating (IPR006416),ATPase%2C P-type%2C ATPase-associated domain (IPR008250),Heavy-metal-associated%2C conserved site (IPR017969),ATPase%2C P-type phosphorylation site (IPR018303),HAD-like domain (IPR023214),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C  P-type%2C cytoplasmic transduction domain A (IPR023300);NIAS_FLcDNA=J065208E19;Oryzabase=7424;TENOR=Os06t0665800-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	27523534	27523604	.	-	.	Parent=Os06t0665800-01
Chr06	irgsp1_rep	CDS	27523231	27523533	.	-	0	Parent=Os06t0665800-01
Chr06	irgsp1_rep	CDS	27521344	27521958	.	-	0	Parent=Os06t0665800-01
Chr06	irgsp1_rep	CDS	27520406	27520835	.	-	0	Parent=Os06t0665800-01
Chr06	irgsp1_rep	CDS	27519909	27520234	.	-	2	Parent=Os06t0665800-01
Chr06	irgsp1_rep	CDS	27519327	27519385	.	-	0	Parent=Os06t0665800-01
Chr06	irgsp1_rep	CDS	27518895	27519237	.	-	1	Parent=Os06t0665800-01
Chr06	irgsp1_rep	CDS	27518494	27518694	.	-	0	Parent=Os06t0665800-01
Chr06	irgsp1_rep	CDS	27518097	27518354	.	-	0	Parent=Os06t0665800-01
Chr06	irgsp1_rep	CDS	27517522	27517998	.	-	0	Parent=Os06t0665800-01
Chr06	irgsp1_rep	three_prime_UTR	27517100	27517521	.	-	.	Parent=Os06t0665800-01
Chr06	irgsp1_rep	mRNA	27517100	27523604	.	-	.	ID=Os06t0665800-02;Name=Os06t0665800-02;Locus_id=Os06g0665800;RAP-DB Gene Symbol Synonym(s)=HMA9%2C OsHMA9 %2Coshma9-1%2C oshma9-2%2C HMA9;RAP-DB Gene Name Synonym(s)=HEAVY METAL ATPASE 9%2C Oryza sativa heavy metal ATPase 9%2C HEAVY METAL ATPASE 9%2C heavy metal P-Type ATPase 9;CGSNL Gene Symbol=HMA9;CGSNL Gene Name=HEAVY METAL ATPASE 9;Oryzabase Gene Symbol Synonym(s)=OsHMA9%2C oshma9-1%2C oshma9-2%2C HMA9%2C OsHMP33%2C HMP33;Oryzabase Gene Name Synonym(s)=Oryza sativa heavy metal ATPase 9%2C HEAVY METAL ATPASE 9%2C heavy metal P-Type ATPase 9%2C Heavy metal-associated protein 33;Note=P-type heavy-metal ATPase%2C Metal efflux transport;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Biological Process: cation transport (GO:0006812),Biological Process: metal ion transport (GO:0030001),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: copper ion binding (GO:0005507),Molecular Function: cation-transporting ATPase activity (GO:0019829),Molecular Function: metal ion binding (GO:0046872),Cellular Component: integral component of membrane (GO:0016021);InterPro=P-type ATPase (IPR001757),P-type ATPase%2C subfamily IB (IPR027256),Heavy metal-associated domain%2C HMA (IPR006121),Heavy metal-associated domain%2C copper ion-binding (IPR006122),P-type ATPase%2C A  domain (IPR008250),HAD-like domain (IPR023214),P-type ATPase%2C cytoplasmic domain N (IPR023299),Heavy-metal-associated%2C conserved site (IPR017969),P-type ATPase%2C phosphorylation site (IPR018303);Manual Curation=October 19%2C 2009;Literature_PMID=17827266;Oryzabase=7424
Chr06	irgsp1_rep	five_prime_UTR	27523534	27523604	.	-	.	Parent=Os06t0665800-02
Chr06	irgsp1_rep	CDS	27523231	27523533	.	-	0	Parent=Os06t0665800-02
Chr06	irgsp1_rep	CDS	27521344	27521958	.	-	0	Parent=Os06t0665800-02
Chr06	irgsp1_rep	CDS	27520725	27520835	.	-	0	Parent=Os06t0665800-02
Chr06	irgsp1_rep	CDS	27520406	27520502	.	-	0	Parent=Os06t0665800-02
Chr06	irgsp1_rep	CDS	27519909	27520234	.	-	2	Parent=Os06t0665800-02
Chr06	irgsp1_rep	CDS	27519327	27519385	.	-	0	Parent=Os06t0665800-02
Chr06	irgsp1_rep	CDS	27518895	27519237	.	-	1	Parent=Os06t0665800-02
Chr06	irgsp1_rep	CDS	27518494	27518694	.	-	0	Parent=Os06t0665800-02
Chr06	irgsp1_rep	CDS	27518097	27518354	.	-	0	Parent=Os06t0665800-02
Chr06	irgsp1_rep	CDS	27517522	27517998	.	-	0	Parent=Os06t0665800-02
Chr06	irgsp1_rep	three_prime_UTR	27517100	27517521	.	-	.	Parent=Os06t0665800-02
Chr06	irgsp1_rep	mRNA	27530111	27532493	.	+	.	ID=Os06t0665900-00;Name=Os06t0665900-00;Locus_id=Os06g0665900;Note=Similar to thioredoxin domain-containing protein 2.;Transcript_evidence=CT836323 (DDBJ%2C Best hit);ORF_evidence=NP_181046.1 (RefSeq);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Thioredoxin (IPR005746),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766);TENOR=Os06t0665900-00;KEGG=Os06t0665900-00
Chr06	irgsp1_rep	five_prime_UTR	27530111	27530127	.	+	.	Parent=Os06t0665900-00
Chr06	irgsp1_rep	CDS	27530128	27530305	.	+	0	Parent=Os06t0665900-00
Chr06	irgsp1_rep	CDS	27530392	27530457	.	+	2	Parent=Os06t0665900-00
Chr06	irgsp1_rep	CDS	27530578	27530628	.	+	2	Parent=Os06t0665900-00
Chr06	irgsp1_rep	CDS	27530726	27530805	.	+	2	Parent=Os06t0665900-00
Chr06	irgsp1_rep	CDS	27531818	27531862	.	+	0	Parent=Os06t0665900-00
Chr06	irgsp1_rep	CDS	27531979	27532073	.	+	0	Parent=Os06t0665900-00
Chr06	irgsp1_rep	CDS	27532276	27532285	.	+	1	Parent=Os06t0665900-00
Chr06	irgsp1_rep	three_prime_UTR	27532286	27532493	.	+	.	Parent=Os06t0665900-00
Chr06	irgsp1_rep	mRNA	27557239	27561598	.	+	.	ID=Os06t0666100-01;Name=Os06t0666100-01;Locus_id=Os06g0666100;RAP-DB Gene Symbol Synonym(s)=SG6%2C GL6;RAP-DB Gene Name Synonym(s)=SHORT GRAIN6;CGSNL Gene Symbol=GL6;CGSNL Gene Name=GRAIN LENGTH 6;Oryzabase Gene Symbol Synonym(s)=OsGL6;Oryzabase Gene Name Synonym(s)=Grain Length 6%2C PLATZ Transcription Factor GL6%2C plant AT-rich sequence- and zinc-binding protein GL6;Note=Plant-specific PLATZ (plant AT-rich sequence- and zinc-binding) transcription factor%2C Regulation of grain length and number%2C Control of plant height%2C Regulation of spikelet hull cell division;Transcript_evidence=AK111793;ORF_evidence=Q655W8;GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Protein of unknown function DUF597 (IPR006734),B-box-type zinc finger (IPR000315);NIAS_FLcDNA=J023090I20;Manual Curation=June 19%2C 2019;Literature_PMID=31138620,31207036;Oryzabase=23096;Expression=AK111793;TENOR=Os06t0666100-01;KEGG=Os06t0666100-01;Subcellular location=cellular_component (GO:0005575) [whole cell]
Chr06	irgsp1_rep	five_prime_UTR	27557239	27557384	.	+	.	Parent=Os06t0666100-01
Chr06	irgsp1_rep	CDS	27557385	27557555	.	+	0	Parent=Os06t0666100-01
Chr06	irgsp1_rep	CDS	27559964	27560038	.	+	0	Parent=Os06t0666100-01
Chr06	irgsp1_rep	CDS	27560134	27560274	.	+	0	Parent=Os06t0666100-01
Chr06	irgsp1_rep	CDS	27560797	27561195	.	+	0	Parent=Os06t0666100-01
Chr06	irgsp1_rep	three_prime_UTR	27561196	27561598	.	+	.	Parent=Os06t0666100-01
Chr06	irgsp1_rep	mRNA	27572146	27573445	.	-	.	ID=Os06t0666183-00;Name=Os06t0666183-00;Locus_id=Os06g0666183;Note=Non-protein coding transcript.;Transcript_evidence=EU950103 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0666183-00
Chr06	irgsp1_rep	exon	27572146	27573445	.	-	.	Parent=Os06t0666183-00
Chr06	irgsp1_rep	mRNA	27594625	27595417	.	+	.	ID=Os06t0666400-01;Name=Os06t0666400-01;Locus_id=Os06g0666400;Oryzabase Gene Symbol Synonym(s)=OsVQ25;Oryzabase Gene Name Synonym(s)=VQ motif-containing protein 25;Note=VQ domain containing protein.;Transcript_evidence=AK108002 (DDBJ%2C Best hit);ORF_evidence=A2YFZ2 (UniProt);InterPro=VQ (IPR008889);NIAS_FLcDNA=002-135-G07;Oryzabase=13641;Expression=AK108002;TENOR=Os06t0666400-01;KEGG=Os06t0666400-01
Chr06	irgsp1_rep	five_prime_UTR	27594625	27594671	.	+	.	Parent=Os06t0666400-01
Chr06	irgsp1_rep	CDS	27594672	27595313	.	+	0	Parent=Os06t0666400-01
Chr06	irgsp1_rep	three_prime_UTR	27595314	27595417	.	+	.	Parent=Os06t0666400-01
Chr06	irgsp1_rep	mRNA	27598569	27599476	.	+	.	ID=Os06t0666500-00;Name=Os06t0666500-00;Locus_id=Os06g0666500;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=CT836290 (DDBJ%2C Best hit);ORF_evidence=NP_001174945.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os06t0666500-00;KEGG=Os06t0666500-00
Chr06	irgsp1_rep	five_prime_UTR	27598569	27598765	.	+	.	Parent=Os06t0666500-00
Chr06	irgsp1_rep	CDS	27598766	27599311	.	+	0	Parent=Os06t0666500-00
Chr06	irgsp1_rep	three_prime_UTR	27599312	27599476	.	+	.	Parent=Os06t0666500-00
Chr06	irgsp1_rep	mRNA	27601270	27605299	.	-	.	ID=Os06t0666600-01;Name=Os06t0666600-01;Locus_id=Os06g0666600;Note=Similar to Glyceraldehyde-3-phosphate dehydrogenase%2C cytosolic 3 (EC 1.2.1.12).;Transcript_evidence=AK106824 (DDBJ%2C Best hit);ORF_evidence=B6TDF8 (UniProt);GO=Biological Process: glucose metabolic process (GO:0006006),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620),Molecular Function: NADP binding (GO:0050661),Molecular Function: NAD binding (GO:0051287);InterPro=Glyceraldehyde-3-phosphate dehydrogenase%2C type I (IPR006424),NAD(P)-binding domain (IPR016040),Glyceraldehyde 3-phosphate dehydrogenase%2C NAD(P) binding domain (IPR020828),Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain (IPR020829),Glyceraldehyde 3-phosphate dehydrogenase%2C active site (IPR020830),Glyceraldehyde/Erythrose phosphate dehydrogenase family (IPR020831);NIAS_FLcDNA=002-116-E09;Expression=AK106824;TENOR=Os06t0666600-01;KEGG=Os06t0666600-01 (EC:1.2.1.12)
Chr06	irgsp1_rep	five_prime_UTR	27605160	27605299	.	-	.	Parent=Os06t0666600-01
Chr06	irgsp1_rep	CDS	27605064	27605159	.	-	0	Parent=Os06t0666600-01
Chr06	irgsp1_rep	CDS	27604680	27604741	.	-	0	Parent=Os06t0666600-01
Chr06	irgsp1_rep	CDS	27604392	27604450	.	-	1	Parent=Os06t0666600-01
Chr06	irgsp1_rep	CDS	27604267	27604305	.	-	2	Parent=Os06t0666600-01
Chr06	irgsp1_rep	CDS	27603955	27604055	.	-	2	Parent=Os06t0666600-01
Chr06	irgsp1_rep	CDS	27603354	27603466	.	-	0	Parent=Os06t0666600-01
Chr06	irgsp1_rep	CDS	27603081	27603180	.	-	1	Parent=Os06t0666600-01
Chr06	irgsp1_rep	CDS	27602837	27602983	.	-	0	Parent=Os06t0666600-01
Chr06	irgsp1_rep	CDS	27602612	27602672	.	-	0	Parent=Os06t0666600-01
Chr06	irgsp1_rep	CDS	27602401	27602498	.	-	2	Parent=Os06t0666600-01
Chr06	irgsp1_rep	CDS	27602179	27602321	.	-	0	Parent=Os06t0666600-01
Chr06	irgsp1_rep	CDS	27601844	27601927	.	-	1	Parent=Os06t0666600-01
Chr06	irgsp1_rep	CDS	27601678	27601767	.	-	1	Parent=Os06t0666600-01
Chr06	irgsp1_rep	CDS	27601445	27601499	.	-	1	Parent=Os06t0666600-01
Chr06	irgsp1_rep	three_prime_UTR	27601270	27601444	.	-	.	Parent=Os06t0666600-01
Chr06	irgsp1_rep	mRNA	27601383	27604056	.	+	.	ID=Os06t0666650-00;Name=Os06t0666650-00;Locus_id=Os06g0666650;Note=Non-protein coding transcript.;Transcript_evidence=BT016463 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0666650-00
Chr06	irgsp1_rep	exon	27601383	27601495	.	+	.	Parent=Os06t0666650-00
Chr06	irgsp1_rep	exon	27601667	27601773	.	+	.	Parent=Os06t0666650-00
Chr06	irgsp1_rep	exon	27601850	27601923	.	+	.	Parent=Os06t0666650-00
Chr06	irgsp1_rep	exon	27602174	27602320	.	+	.	Parent=Os06t0666650-00
Chr06	irgsp1_rep	exon	27602400	27602494	.	+	.	Parent=Os06t0666650-00
Chr06	irgsp1_rep	exon	27602607	27602663	.	+	.	Parent=Os06t0666650-00
Chr06	irgsp1_rep	exon	27602829	27602982	.	+	.	Parent=Os06t0666650-00
Chr06	irgsp1_rep	exon	27603080	27603180	.	+	.	Parent=Os06t0666650-00
Chr06	irgsp1_rep	exon	27603354	27603465	.	+	.	Parent=Os06t0666650-00
Chr06	irgsp1_rep	exon	27603954	27604056	.	+	.	Parent=Os06t0666650-00
Chr06	irgsp1_rep	mRNA	27608539	27609028	.	-	.	ID=Os06t0666750-00;Name=Os06t0666750-00;Locus_id=Os06g0666750;Note=Hypothetical protein.;Transcript_evidence=BT085984 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0666750-00
Chr06	irgsp1_rep	CDS	27608539	27609028	.	-	0	Parent=Os06t0666750-00
Chr06	irgsp1_rep	mRNA	27614151	27614830	.	+	.	ID=Os06t0666800-01;Name=Os06t0666800-01;Locus_id=Os06g0666800;Note=Conserved hypothetical protein.;Transcript_evidence=AK107710 (DDBJ%2C Best hit),AK103209 (DDBJ%2C Best hit);ORF_evidence=A2YFZ6 (UniProt);NIAS_FLcDNA=002-132-D09,J033122J24;Expression=AK107710;TENOR=Os06t0666800-01;KEGG=Os06t0666800-01
Chr06	irgsp1_rep	five_prime_UTR	27614151	27614223	.	+	.	Parent=Os06t0666800-01
Chr06	irgsp1_rep	CDS	27614224	27614532	.	+	0	Parent=Os06t0666800-01
Chr06	irgsp1_rep	three_prime_UTR	27614533	27614830	.	+	.	Parent=Os06t0666800-01
Chr06	irgsp1_rep	mRNA	27622771	27626271	.	+	.	ID=Os06t0667000-01;Name=Os06t0667000-01;Locus_id=Os06g0667000;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK110075 (DDBJ%2C Best hit);ORF_evidence=A2YFZ8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=002-160-F03;Expression=AK110075;TENOR=Os06t0667000-01;KEGG=Os06t0667000-01
Chr06	irgsp1_rep	five_prime_UTR	27622771	27622828	.	+	.	Parent=Os06t0667000-01
Chr06	irgsp1_rep	CDS	27622829	27626014	.	+	0	Parent=Os06t0667000-01
Chr06	irgsp1_rep	three_prime_UTR	27626015	27626271	.	+	.	Parent=Os06t0667000-01
Chr06	irgsp1_rep	mRNA	27627768	27633037	.	+	.	ID=Os06t0667100-01;Name=Os06t0667100-01;Locus_id=Os06g0667100;CGSNL Gene Symbol=HAP5B;CGSNL Gene Name=HAP5B SUBUNIT OF CCAAT-BOX BINDING COMPLEX;Oryzabase Gene Symbol Synonym(s)=OsHAP5B%2C NF-YC%2C CBF-C%2C OsNF-YC4%2C Os-NF-YC4%2C NF-YC4%2C NFYC4%2C OsNF-YC4-3%2C NF-YC4-3;Oryzabase Gene Name Synonym(s)=Nuclear factor Y C4 subunit%2C Nuclear factor Y C subunit 4%2C NUCLEAR FACTOR-Y subunit C4%2C NUCLEAR FACTOR-Y subunit NF-YC4%2C NF-YC subunit 4%2C NF-YC family 4;Note=Similar to Nuclear Y/CCAAT-box binding factor C subunit NF-YC.;Transcript_evidence=AK105079 (DDBJ%2C Best hit),AK066630 (DDBJ%2C Best hit);ORF_evidence=NP_001149626.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Transcription factor CBF/NF-Y/archaeal histone (IPR003958),Histone-fold (IPR009072);NIAS_FLcDNA=001-045-H09,J013068I17;Oryzabase=8492;TENOR=Os06t0667100-01
Chr06	irgsp1_rep	five_prime_UTR	27627768	27628008	.	+	.	Parent=Os06t0667100-01
Chr06	irgsp1_rep	five_prime_UTR	27631861	27631901	.	+	.	Parent=Os06t0667100-01
Chr06	irgsp1_rep	CDS	27631902	27632654	.	+	0	Parent=Os06t0667100-01
Chr06	irgsp1_rep	three_prime_UTR	27632655	27633037	.	+	.	Parent=Os06t0667100-01
Chr06	irgsp1_rep	mRNA	27637555	27641578	.	+	.	ID=Os06t0667200-01;Name=Os06t0667200-01;Locus_id=Os06g0667200;RAP-DB Gene Symbol Synonym(s)=MADS30%2C OsMADS30;RAP-DB Gene Name Synonym(s)=MADS BOX GENE 30%2C MADS box gene30%2C MADS-box transcription factor 30;CGSNL Gene Symbol=MADS30;CGSNL Gene Name=MADS BOX GENE 30;Oryzabase Gene Symbol Synonym(s)=OsMADS30;Oryzabase Gene Name Synonym(s)=MADS box gene30%2C MADS-box transcription factor 30;Note=MADS-box transcription factor%2C Vegetative development;Transcript_evidence=NM_001064848,AY174093 (Dongjin);ORF_evidence=Q655V4;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700),Molecular Function: protein dimerization activity (GO:0046983),Cellular Component: nucleus (GO:0005634);InterPro=Transcription factor%2C MADS-box (IPR002100),Transcription factor%2C K-box (IPR002487);Manual Curation=January 6%2C 2016;Literature_PMID=26473514,14701936;Oryzabase=3095;TENOR=Os06t0667200-00
Chr06	irgsp1_rep	five_prime_UTR	27637555	27637742	.	+	.	Parent=Os06t0667200-01
Chr06	irgsp1_rep	five_prime_UTR	27637829	27637847	.	+	.	Parent=Os06t0667200-01
Chr06	irgsp1_rep	CDS	27637848	27638035	.	+	0	Parent=Os06t0667200-01
Chr06	irgsp1_rep	CDS	27638694	27638769	.	+	1	Parent=Os06t0667200-01
Chr06	irgsp1_rep	CDS	27638907	27639071	.	+	0	Parent=Os06t0667200-01
Chr06	irgsp1_rep	CDS	27639233	27639274	.	+	0	Parent=Os06t0667200-01
Chr06	irgsp1_rep	CDS	27639366	27639428	.	+	0	Parent=Os06t0667200-01
Chr06	irgsp1_rep	CDS	27640818	27640908	.	+	0	Parent=Os06t0667200-01
Chr06	irgsp1_rep	CDS	27641153	27641193	.	+	2	Parent=Os06t0667200-01
Chr06	irgsp1_rep	three_prime_UTR	27641194	27641578	.	+	.	Parent=Os06t0667200-01
Chr06	irgsp1_rep	mRNA	27644256	27646536	.	+	.	ID=Os06t0667300-01;Name=Os06t0667300-01;Locus_id=Os06g0667300;Note=Non-protein coding transcript.;Transcript_evidence=AK102272 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J033089A19;TENOR=Os06t0667300-01
Chr06	irgsp1_rep	exon	27644256	27646536	.	+	.	Parent=Os06t0667300-01
Chr06	irgsp1_rep	mRNA	27652731	27656723	.	-	.	ID=Os06t0667400-01;Name=Os06t0667400-01;Locus_id=Os06g0667400;Note=Conserved hypothetical protein.;Transcript_evidence=AK065424 (DDBJ%2C Best hit);ORF_evidence=Q655T7 (UniProt);NIAS_FLcDNA=J013003I03;Expression=AK065424;TENOR=Os06t0667400-01;KEGG=Os06t0667400-01
Chr06	irgsp1_rep	five_prime_UTR	27656490	27656723	.	-	.	Parent=Os06t0667400-01
Chr06	irgsp1_rep	CDS	27656346	27656489	.	-	0	Parent=Os06t0667400-01
Chr06	irgsp1_rep	three_prime_UTR	27652731	27656345	.	-	.	Parent=Os06t0667400-01
Chr06	irgsp1_rep	mRNA	27653646	27656696	.	-	.	ID=Os06t0667400-02;Name=Os06t0667400-02;Locus_id=Os06g0667400;Note=Conserved hypothetical protein.;Transcript_evidence=AK065580 (DDBJ%2C Best hit);ORF_evidence=Q655T7 (UniProt);NIAS_FLcDNA=J013033G23;Expression=AK065580;TENOR=Os06t0667400-02;KEGG=Os06t0667400-02
Chr06	irgsp1_rep	five_prime_UTR	27656490	27656696	.	-	.	Parent=Os06t0667400-02
Chr06	irgsp1_rep	CDS	27656346	27656489	.	-	0	Parent=Os06t0667400-02
Chr06	irgsp1_rep	three_prime_UTR	27653646	27656345	.	-	.	Parent=Os06t0667400-02
Chr06	irgsp1_rep	mRNA	27657956	27658818	.	+	.	ID=Os06t0667500-01;Name=Os06t0667500-01;Locus_id=Os06g0667500;Note=Similar to 14 kDa zinc-binding protein (Protein kinase C inhibitor) (PKCI).;Transcript_evidence=AK062935 (DDBJ%2C Best hit);ORF_evidence=B6UAW2 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Histidine triad (HIT) protein (IPR001310),Histidine triad-like motif (IPR011146),Histidine triad motif (IPR011151),Histidine triad%2C conserved site (IPR019808);NIAS_FLcDNA=001-109-B01;Expression=AK062935;TENOR=Os06t0667500-01;KEGG=Os06t0667500-01
Chr06	irgsp1_rep	CDS	27657956	27658045	.	+	0	Parent=Os06t0667500-01
Chr06	irgsp1_rep	CDS	27658268	27658385	.	+	0	Parent=Os06t0667500-01
Chr06	irgsp1_rep	CDS	27658577	27658644	.	+	2	Parent=Os06t0667500-01
Chr06	irgsp1_rep	three_prime_UTR	27658645	27658818	.	+	.	Parent=Os06t0667500-01
Chr06	irgsp1_rep	mRNA	27659154	27661166	.	-	.	ID=Os06t0667600-01;Name=Os06t0667600-01;Locus_id=Os06g0667600;Oryzabase Gene Name Synonym(s)=Glycine cleavage system H protein;Note=Similar to Glycine decarboxylase complex H-protein.;Transcript_evidence=AK071621 (DDBJ%2C Best hit),AK058606 (DDBJ%2C Best hit);ORF_evidence=NP_001152670.1 (RefSeq);GO=Biological Process: glycine catabolic process (GO:0006546),Biological Process: glycine decarboxylation via glycine cleavage system (GO:0019464),Cellular Component: glycine cleavage complex (GO:0005960);InterPro=Glycine cleavage H-protein (IPR002930),2-oxo acid dehydrogenase%2C lipoyl-binding site (IPR003016),Single hybrid motif (IPR011053),Glycine cleavage H-protein%2C subgroup (IPR017453);NIAS_FLcDNA=J023101D03,001-018-A03;Oryzabase=17623;Expression=AK071621;TENOR=Os06t0667600-01;KEGG=Os06t0667600-01
Chr06	irgsp1_rep	five_prime_UTR	27661128	27661166	.	-	.	Parent=Os06t0667600-01
Chr06	irgsp1_rep	CDS	27661034	27661127	.	-	0	Parent=Os06t0667600-01
Chr06	irgsp1_rep	CDS	27660025	27660113	.	-	2	Parent=Os06t0667600-01
Chr06	irgsp1_rep	CDS	27659670	27659840	.	-	0	Parent=Os06t0667600-01
Chr06	irgsp1_rep	CDS	27659452	27659580	.	-	0	Parent=Os06t0667600-01
Chr06	irgsp1_rep	three_prime_UTR	27659154	27659451	.	-	.	Parent=Os06t0667600-01
Chr06	irgsp1_rep	mRNA	27659070	27659318	.	-	.	ID=Os06t0667600-03;Name=Os06t0667600-03;Locus_id=Os06g0667600;Oryzabase Gene Name Synonym(s)=Glycine cleavage system H protein;Note=Non-protein coding transcript.;Transcript_evidence=AK060567 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-023-B03;Oryzabase=17623;TENOR=Os06t0667600-03
Chr06	irgsp1_rep	exon	27659070	27659318	.	-	.	Parent=Os06t0667600-03
Chr06	irgsp1_rep	mRNA	27666632	27670507	.	+	.	ID=Os06t0667900-00;Name=Os06t0667900-00;Locus_id=Os06g0667900;Note=Disease resistance protein domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q655T3 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os06t0667900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	27666632	27667228	.	+	0	Parent=Os06t0667900-00
Chr06	irgsp1_rep	CDS	27667574	27670507	.	+	0	Parent=Os06t0667900-00
Chr06	irgsp1_rep	mRNA	27667753	27671259	.	-	.	ID=Os06t0668000-01;Name=Os06t0668000-01;Locus_id=Os06g0668000;Note=Hypothetical protein.;Transcript_evidence=AK064023 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-125-A05;Expression=AK064023;TENOR=Os06t0668000-01;KEGG=Os06t0668000-01
Chr06	irgsp1_rep	five_prime_UTR	27671109	27671259	.	-	.	Parent=Os06t0668000-01
Chr06	irgsp1_rep	five_prime_UTR	27669574	27669741	.	-	.	Parent=Os06t0668000-01
Chr06	irgsp1_rep	CDS	27669295	27669573	.	-	0	Parent=Os06t0668000-01
Chr06	irgsp1_rep	three_prime_UTR	27667753	27669294	.	-	.	Parent=Os06t0668000-01
Chr06	irgsp1_rep	mRNA	27668186	27671221	.	-	.	ID=Os06t0668000-02;Name=Os06t0668000-02;Locus_id=Os06g0668000;Note=Hypothetical protein.;Transcript_evidence=AK121707 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033075G03;Expression=AK121707;TENOR=Os06t0668000-02;KEGG=Os06t0668000-02
Chr06	irgsp1_rep	five_prime_UTR	27671109	27671221	.	-	.	Parent=Os06t0668000-02
Chr06	irgsp1_rep	five_prime_UTR	27670114	27670431	.	-	.	Parent=Os06t0668000-02
Chr06	irgsp1_rep	five_prime_UTR	27669574	27669741	.	-	.	Parent=Os06t0668000-02
Chr06	irgsp1_rep	CDS	27669295	27669573	.	-	0	Parent=Os06t0668000-02
Chr06	irgsp1_rep	three_prime_UTR	27668652	27669294	.	-	.	Parent=Os06t0668000-02
Chr06	irgsp1_rep	three_prime_UTR	27668186	27668559	.	-	.	Parent=Os06t0668000-02
Chr06	irgsp1_rep	mRNA	27676510	27679751	.	-	.	ID=Os06t0668200-01;Name=Os06t0668200-01;Locus_id=Os06g0668200;CGSNL Gene Symbol=PGK4;CGSNL Gene Name=PHOSPHOGLYCERATE KINASE 4;Oryzabase Gene Symbol Synonym(s)=PGK%2C OsPGK4;Oryzabase Gene Name Synonym(s)=phosphoglycerate kinase%2C "phosphoglycerate kinase%2C cytosolic"%2C Phosphoglycerate kinase 4%2C Phosphoglycerate kinase-4;Note=Similar to Phosphoglycerate kinase%2C cytosolic (EC 2.7.2.3).;Transcript_evidence=AK070705 (DDBJ%2C Best hit),AK101622 (DDBJ%2C Best hit);ORF_evidence=A2YG06 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Molecular Function: phosphoglycerate kinase activity (GO:0004618);InterPro=Phosphoglycerate kinase (IPR001576),Phosphoglycerate kinase%2C N-terminal (IPR015824),Phosphoglycerate kinase%2C C-terminal (IPR015901),Phosphoglycerate kinase%2C conserved site (IPR015911);NIAS_FLcDNA=J023060M06,J033052L01;Oryzabase=14451;TENOR=Os06t0668200-01
Chr06	irgsp1_rep	five_prime_UTR	27679672	27679751	.	-	.	Parent=Os06t0668200-01
Chr06	irgsp1_rep	five_prime_UTR	27679555	27679576	.	-	.	Parent=Os06t0668200-01
Chr06	irgsp1_rep	CDS	27679360	27679554	.	-	0	Parent=Os06t0668200-01
Chr06	irgsp1_rep	CDS	27678554	27678631	.	-	0	Parent=Os06t0668200-01
Chr06	irgsp1_rep	CDS	27678188	27678448	.	-	0	Parent=Os06t0668200-01
Chr06	irgsp1_rep	CDS	27677530	27677847	.	-	0	Parent=Os06t0668200-01
Chr06	irgsp1_rep	CDS	27677043	27677201	.	-	0	Parent=Os06t0668200-01
Chr06	irgsp1_rep	CDS	27676772	27676966	.	-	0	Parent=Os06t0668200-01
Chr06	irgsp1_rep	three_prime_UTR	27676510	27676771	.	-	.	Parent=Os06t0668200-01
Chr06	irgsp1_rep	mRNA	27676794	27679545	.	+	.	ID=Os06t0668250-00;Name=Os06t0668250-00;Locus_id=Os06g0668250;Note=Hypothetical gene.;Transcript_evidence=BT088042 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0668250-00
Chr06	irgsp1_rep	five_prime_UTR	27676794	27677009	.	+	.	Parent=Os06t0668250-00
Chr06	irgsp1_rep	five_prime_UTR	27677087	27677220	.	+	.	Parent=Os06t0668250-00
Chr06	irgsp1_rep	five_prime_UTR	27677550	27677838	.	+	.	Parent=Os06t0668250-00
Chr06	irgsp1_rep	five_prime_UTR	27678172	27678303	.	+	.	Parent=Os06t0668250-00
Chr06	irgsp1_rep	CDS	27678304	27678500	.	+	0	Parent=Os06t0668250-00
Chr06	irgsp1_rep	CDS	27679342	27679545	.	+	1	Parent=Os06t0668250-00
Chr06	irgsp1_rep	mRNA	27681408	27682517	.	-	.	ID=Os06t0668300-00;Name=Os06t0668300-00;Locus_id=Os06g0668300;Note=BTB/POZ-like domain containing protein.;Transcript_evidence=AK375661 (DDBJ);ORF_evidence=B9FQE4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069);TENOR=Os06t0668300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	27682440	27682517	.	-	.	Parent=Os06t0668300-00
Chr06	irgsp1_rep	CDS	27681408	27682439	.	-	0	Parent=Os06t0668300-00
Chr06	irgsp1_rep	mRNA	27683632	27685556	.	-	.	ID=Os06t0668400-01;Name=Os06t0668400-01;Locus_id=Os06g0668400;Oryzabase Gene Symbol Synonym(s)=OsMB8%2C MB8;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 8%2C MDC protein with a BTB domain 8%2C MDC protein having BTB domain 8;Note=Kelch related domain containing protein.;Transcript_evidence=AK108036 (DDBJ%2C Best hit);ORF_evidence=B9FQE4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);NIAS_FLcDNA=002-137-C07;Oryzabase=21202;Expression=AK108036;TENOR=Os06t0668400-01;KEGG=Os06t0668400-01
Chr06	irgsp1_rep	five_prime_UTR	27685483	27685556	.	-	.	Parent=Os06t0668400-01
Chr06	irgsp1_rep	CDS	27684388	27685482	.	-	0	Parent=Os06t0668400-01
Chr06	irgsp1_rep	three_prime_UTR	27684381	27684387	.	-	.	Parent=Os06t0668400-01
Chr06	irgsp1_rep	three_prime_UTR	27683632	27683937	.	-	.	Parent=Os06t0668400-01
Chr06	irgsp1_rep	mRNA	27705401	27706025	.	-	.	ID=Os06t0669100-00;Name=Os06t0669100-00;Locus_id=Os06g0669100;Note=Conserved hypothetical protein.;Transcript_evidence=AK099506 (DDBJ%2C Secondary hit);ORF_evidence=Q653E7 (UniProt);TENOR=Os06t0669100-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	27706024	27706025	.	-	.	Parent=Os06t0669100-00
Chr06	irgsp1_rep	CDS	27705703	27706023	.	-	0	Parent=Os06t0669100-00
Chr06	irgsp1_rep	three_prime_UTR	27705602	27705702	.	-	.	Parent=Os06t0669100-00
Chr06	irgsp1_rep	three_prime_UTR	27705401	27705587	.	-	.	Parent=Os06t0669100-00
Chr06	irgsp1_rep	mRNA	27705641	27706326	.	+	.	ID=Os06t0669200-01;Name=Os06t0669200-01;Locus_id=Os06g0669200;Note=Conserved hypothetical protein.;Transcript_evidence=AK062363 (DDBJ%2C Best hit);ORF_evidence=Q5Z8D4 (UniProt);NIAS_FLcDNA=001-101-H07;TENOR=Os06t0669200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	27705641	27705848	.	+	.	Parent=Os06t0669200-01
Chr06	irgsp1_rep	CDS	27705849	27706157	.	+	0	Parent=Os06t0669200-01
Chr06	irgsp1_rep	three_prime_UTR	27706158	27706326	.	+	.	Parent=Os06t0669200-01
Chr06	irgsp1_rep	mRNA	27707146	27707589	.	-	.	ID=Os06t0669225-00;Name=Os06t0669225-00;Locus_id=Os06g0669225;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q655S3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=MATH (IPR002083),TRAF-like (IPR008974);TENOR=Os06t0669225-00;KEGG=Os06t0669225-00
Chr06	irgsp1_rep	CDS	27707146	27707589	.	-	0	Parent=Os06t0669225-00
Chr06	irgsp1_rep	mRNA	27709730	27712785	.	-	.	ID=Os06t0669275-00;Name=Os06t0669275-00;Locus_id=Os06g0669275;CGSNL Gene Symbol=NTP7;CGSNL Gene Name=NUCLEOTIDYL TRANSFERASE PROTEIN 7;Oryzabase Gene Symbol Synonym(s)=OsNTP7;Oryzabase Gene Name Synonym(s)=nucleotidyl transferase protein 7;Note=Similar to MEE44 (maternal effect embryo arrest 44)%3B nucleotidyltransferase.;Transcript_evidence=BT018457 (DDBJ);ORF_evidence=NP_191917.2 (RefSeq);InterPro=PAP/25A-associated (IPR002058);Oryzabase=21890;TENOR=Os06t0669275-00;KEGG=Os06t0669275-00 (EC:2.7.7.7)
Chr06	irgsp1_rep	CDS	27712495	27712785	.	-	0	Parent=Os06t0669275-00
Chr06	irgsp1_rep	CDS	27711496	27711615	.	-	0	Parent=Os06t0669275-00
Chr06	irgsp1_rep	CDS	27710927	27710986	.	-	0	Parent=Os06t0669275-00
Chr06	irgsp1_rep	CDS	27710646	27710686	.	-	0	Parent=Os06t0669275-00
Chr06	irgsp1_rep	CDS	27710396	27710473	.	-	1	Parent=Os06t0669275-00
Chr06	irgsp1_rep	CDS	27710225	27710309	.	-	1	Parent=Os06t0669275-00
Chr06	irgsp1_rep	CDS	27709820	27709948	.	-	0	Parent=Os06t0669275-00
Chr06	irgsp1_rep	three_prime_UTR	27709730	27709819	.	-	.	Parent=Os06t0669275-00
Chr06	irgsp1_rep	mRNA	27724610	27728259	.	-	.	ID=Os06t0669400-01;Name=Os06t0669400-01;Locus_id=Os06g0669400;CGSNL Gene Symbol=FTSH2;Oryzabase Gene Symbol Synonym(s)=OsFtsH2%2C FtsH2;Note=Similar to Cell division protease ftsH homolog 2%2C chloroplastic.;Transcript_evidence=AK064913 (DDBJ%2C Best hit);ORF_evidence=Q655S1 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: protein catabolic process (GO:0030163),Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=Peptidase M41 (IPR000642),ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960),Peptidase M41%2C FtsH (IPR005936);NIAS_FLcDNA=J013000M12;Oryzabase=21253;Expression=AK064913;TENOR=Os06t0669400-01;KEGG=Os06t0669400-01 (EC:3.4.24.-)
Chr06	irgsp1_rep	five_prime_UTR	27728014	27728259	.	-	.	Parent=Os06t0669400-01
Chr06	irgsp1_rep	five_prime_UTR	27727459	27727467	.	-	.	Parent=Os06t0669400-01
Chr06	irgsp1_rep	CDS	27726325	27727458	.	-	0	Parent=Os06t0669400-01
Chr06	irgsp1_rep	CDS	27725683	27725996	.	-	0	Parent=Os06t0669400-01
Chr06	irgsp1_rep	CDS	27725342	27725582	.	-	1	Parent=Os06t0669400-01
Chr06	irgsp1_rep	CDS	27724756	27725097	.	-	0	Parent=Os06t0669400-01
Chr06	irgsp1_rep	three_prime_UTR	27724610	27724755	.	-	.	Parent=Os06t0669400-01
Chr06	irgsp1_rep	mRNA	27724577	27728070	.	-	.	ID=Os06t0669400-02;Name=Os06t0669400-02;Locus_id=Os06g0669400;CGSNL Gene Symbol=FTSH2;Oryzabase Gene Symbol Synonym(s)=OsFtsH2%2C FtsH2;Note=Similar to Cell division protease ftsH homolog 2%2C chloroplastic.;Transcript_evidence=AK060805 (DDBJ%2C Best hit);ORF_evidence=Q655S1 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: protein catabolic process (GO:0030163),Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=Peptidase M41 (IPR000642),ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960),Peptidase M41%2C FtsH (IPR005936);NIAS_FLcDNA=001-033-F12;Oryzabase=21253;Expression=AK060805;TENOR=Os06t0669400-02;KEGG=Os06t0669400-02 (EC:3.4.24.-)
Chr06	irgsp1_rep	five_prime_UTR	27728014	27728070	.	-	.	Parent=Os06t0669400-02
Chr06	irgsp1_rep	five_prime_UTR	27727459	27727467	.	-	.	Parent=Os06t0669400-02
Chr06	irgsp1_rep	CDS	27726325	27727458	.	-	0	Parent=Os06t0669400-02
Chr06	irgsp1_rep	CDS	27725683	27725996	.	-	0	Parent=Os06t0669400-02
Chr06	irgsp1_rep	CDS	27725342	27725582	.	-	1	Parent=Os06t0669400-02
Chr06	irgsp1_rep	CDS	27724756	27725097	.	-	0	Parent=Os06t0669400-02
Chr06	irgsp1_rep	three_prime_UTR	27724577	27724755	.	-	.	Parent=Os06t0669400-02
Chr06	irgsp1_rep	mRNA	27724610	27728068	.	-	.	ID=Os06t0669400-03;Name=Os06t0669400-03;Locus_id=Os06g0669400;CGSNL Gene Symbol=FTSH2;Oryzabase Gene Symbol Synonym(s)=OsFtsH2%2C FtsH2;Note=Similar to ATP-dependent zinc metalloprotease FTSH 2%2C chloroplastic.;Transcript_evidence=AK072047 (DDBJ%2C Best hit);ORF_evidence=Q655S1 (UniProt);NIAS_FLcDNA=J013111G24;Oryzabase=21253;TENOR=Os06t0669400-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	27728014	27728068	.	-	.	Parent=Os06t0669400-03
Chr06	irgsp1_rep	five_prime_UTR	27727459	27727467	.	-	.	Parent=Os06t0669400-03
Chr06	irgsp1_rep	CDS	27727260	27727458	.	-	0	Parent=Os06t0669400-03
Chr06	irgsp1_rep	CDS	27727169	27727200	.	-	2	Parent=Os06t0669400-03
Chr06	irgsp1_rep	three_prime_UTR	27726325	27727168	.	-	.	Parent=Os06t0669400-03
Chr06	irgsp1_rep	three_prime_UTR	27725683	27725996	.	-	.	Parent=Os06t0669400-03
Chr06	irgsp1_rep	three_prime_UTR	27725342	27725582	.	-	.	Parent=Os06t0669400-03
Chr06	irgsp1_rep	three_prime_UTR	27724610	27725097	.	-	.	Parent=Os06t0669400-03
Chr06	irgsp1_rep	mRNA	27728543	27733488	.	-	.	ID=Os06t0669600-01;Name=Os06t0669600-01;Locus_id=Os06g0669600;Note=Similar to predicted protein.;Transcript_evidence=AK288929 (DDBJ%2C Best hit);ORF_evidence=NP_199956.1 (RefSeq);InterPro=Conserved oligomeric Golgi complex%2C subunit 7 (IPR019335);NIAS_FLcDNA=J090082H05;TENOR=Os06t0669600-01;KEGG=Os06t0669600-01
Chr06	irgsp1_rep	five_prime_UTR	27733488	27733488	.	-	.	Parent=Os06t0669600-01
Chr06	irgsp1_rep	CDS	27733266	27733487	.	-	0	Parent=Os06t0669600-01
Chr06	irgsp1_rep	CDS	27732229	27732318	.	-	0	Parent=Os06t0669600-01
Chr06	irgsp1_rep	CDS	27732004	27732123	.	-	0	Parent=Os06t0669600-01
Chr06	irgsp1_rep	CDS	27731781	27731915	.	-	0	Parent=Os06t0669600-01
Chr06	irgsp1_rep	three_prime_UTR	27731476	27731780	.	-	.	Parent=Os06t0669600-01
Chr06	irgsp1_rep	three_prime_UTR	27731175	27731320	.	-	.	Parent=Os06t0669600-01
Chr06	irgsp1_rep	three_prime_UTR	27730806	27731004	.	-	.	Parent=Os06t0669600-01
Chr06	irgsp1_rep	three_prime_UTR	27730028	27730694	.	-	.	Parent=Os06t0669600-01
Chr06	irgsp1_rep	three_prime_UTR	27729399	27729731	.	-	.	Parent=Os06t0669600-01
Chr06	irgsp1_rep	three_prime_UTR	27728543	27729141	.	-	.	Parent=Os06t0669600-01
Chr06	irgsp1_rep	mRNA	27734973	27738465	.	-	.	ID=Os06t0669700-01;Name=Os06t0669700-01;Locus_id=Os06g0669700;Oryzabase Gene Symbol Synonym(s)=MYB;Oryzabase Gene Name Synonym(s)=MYB transcription factor;Note=Similar to DNA binding protein.;Transcript_evidence=AK070871 (DDBJ%2C Best hit);ORF_evidence=NP_001149442.1 (RefSeq);InterPro=Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J023073K02;Oryzabase=21714;TENOR=Os06t0669700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	27738465	27738465	.	-	.	Parent=Os06t0669700-01
Chr06	irgsp1_rep	CDS	27738408	27738464	.	-	0	Parent=Os06t0669700-01
Chr06	irgsp1_rep	CDS	27737688	27737811	.	-	0	Parent=Os06t0669700-01
Chr06	irgsp1_rep	CDS	27737434	27737601	.	-	2	Parent=Os06t0669700-01
Chr06	irgsp1_rep	CDS	27737236	27737346	.	-	2	Parent=Os06t0669700-01
Chr06	irgsp1_rep	CDS	27736686	27736795	.	-	2	Parent=Os06t0669700-01
Chr06	irgsp1_rep	CDS	27736114	27736173	.	-	0	Parent=Os06t0669700-01
Chr06	irgsp1_rep	CDS	27735438	27735535	.	-	0	Parent=Os06t0669700-01
Chr06	irgsp1_rep	CDS	27735339	27735354	.	-	1	Parent=Os06t0669700-01
Chr06	irgsp1_rep	three_prime_UTR	27734973	27735338	.	-	.	Parent=Os06t0669700-01
Chr06	irgsp1_rep	mRNA	27743193	27747053	.	+	.	ID=Os06t0669800-01;Name=Os06t0669800-01;Locus_id=Os06g0669800;Note=Ovarian tumour%2C otubain domain containing protein.;Transcript_evidence=AK073551 (DDBJ%2C Best hit);ORF_evidence=B6U3W2 (UniProt);InterPro=Ovarian tumour%2C otubain (IPR003323);NIAS_FLcDNA=J033044I12;Expression=AK073551;TENOR=Os06t0669800-01;KEGG=Os06t0669800-01
Chr06	irgsp1_rep	five_prime_UTR	27743193	27743331	.	+	.	Parent=Os06t0669800-01
Chr06	irgsp1_rep	five_prime_UTR	27744432	27744476	.	+	.	Parent=Os06t0669800-01
Chr06	irgsp1_rep	CDS	27744477	27744647	.	+	0	Parent=Os06t0669800-01
Chr06	irgsp1_rep	CDS	27744917	27744990	.	+	0	Parent=Os06t0669800-01
Chr06	irgsp1_rep	CDS	27745084	27745138	.	+	1	Parent=Os06t0669800-01
Chr06	irgsp1_rep	CDS	27745441	27745515	.	+	0	Parent=Os06t0669800-01
Chr06	irgsp1_rep	CDS	27745588	27745661	.	+	0	Parent=Os06t0669800-01
Chr06	irgsp1_rep	CDS	27745739	27745787	.	+	1	Parent=Os06t0669800-01
Chr06	irgsp1_rep	CDS	27746273	27746357	.	+	0	Parent=Os06t0669800-01
Chr06	irgsp1_rep	CDS	27746465	27746521	.	+	2	Parent=Os06t0669800-01
Chr06	irgsp1_rep	CDS	27746654	27746697	.	+	2	Parent=Os06t0669800-01
Chr06	irgsp1_rep	three_prime_UTR	27746698	27747053	.	+	.	Parent=Os06t0669800-01
Chr06	irgsp1_rep	mRNA	27749135	27756326	.	+	.	ID=Os06t0670000-01;Name=Os06t0670000-01;Locus_id=Os06g0670000;RAP-DB Gene Symbol Synonym(s)=OsABA3%2C OsMoCo;RAP-DB Gene Name Synonym(s)=abscisic acid-deficient 3;CGSNL Gene Symbol=ABA3;CGSNL Gene Name=ABA DEFICIENT 3;Oryzabase Gene Symbol Synonym(s)=OsABA3%2C OsMoCo%2C MoCo;Note=Molybdenum cofactor sulfurase%2C Molybdenum cofactor sulfurtransferase%2C Abscisic acid (ABA) biosynthesis%2C Disease resistance;Transcript_evidence=AK287475;ORF_evidence=Q655R6;GO=Biological Process: Mo-molybdopterin cofactor biosynthetic process (GO:0006777),Molecular Function: catalytic activity (GO:0003824),Molecular Function: Mo-molybdopterin cofactor sulfurase activity (GO:0008265),Molecular Function: molybdenum ion binding (GO:0030151),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent transferase (IPR015424),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015421),Pyruvate kinase-like%2C insert domain superfamily (IPR011037),Molybdenum cofactor sulfurase (IPR028886),Aminotransferase class V domain (IPR000192),MOSC%2C N-terminal beta barrel (IPR005303),Molybdenum cofactor sulfurase%2C C-terminal (IPR005302);NIAS_FLcDNA=J043022P18;Manual Curation=February 28%2C 2020;Literature_PMID=30124364;Oryzabase=23364;TENOR=Os06t0670000-01;KEGG=Os06t0670000-01
Chr06	irgsp1_rep	five_prime_UTR	27749135	27749486	.	+	.	Parent=Os06t0670000-01
Chr06	irgsp1_rep	CDS	27749487	27749598	.	+	0	Parent=Os06t0670000-01
Chr06	irgsp1_rep	CDS	27750019	27750117	.	+	2	Parent=Os06t0670000-01
Chr06	irgsp1_rep	CDS	27750224	27750282	.	+	2	Parent=Os06t0670000-01
Chr06	irgsp1_rep	CDS	27750640	27750800	.	+	0	Parent=Os06t0670000-01
Chr06	irgsp1_rep	CDS	27751109	27751284	.	+	1	Parent=Os06t0670000-01
Chr06	irgsp1_rep	CDS	27751684	27751795	.	+	2	Parent=Os06t0670000-01
Chr06	irgsp1_rep	CDS	27751888	27751990	.	+	1	Parent=Os06t0670000-01
Chr06	irgsp1_rep	CDS	27752077	27752122	.	+	0	Parent=Os06t0670000-01
Chr06	irgsp1_rep	CDS	27752323	27752361	.	+	2	Parent=Os06t0670000-01
Chr06	irgsp1_rep	CDS	27752456	27752612	.	+	2	Parent=Os06t0670000-01
Chr06	irgsp1_rep	CDS	27752684	27752786	.	+	1	Parent=Os06t0670000-01
Chr06	irgsp1_rep	CDS	27752990	27753106	.	+	0	Parent=Os06t0670000-01
Chr06	irgsp1_rep	CDS	27753533	27753610	.	+	0	Parent=Os06t0670000-01
Chr06	irgsp1_rep	CDS	27753697	27753798	.	+	0	Parent=Os06t0670000-01
Chr06	irgsp1_rep	CDS	27753905	27753998	.	+	0	Parent=Os06t0670000-01
Chr06	irgsp1_rep	CDS	27754085	27754195	.	+	2	Parent=Os06t0670000-01
Chr06	irgsp1_rep	CDS	27754296	27754360	.	+	2	Parent=Os06t0670000-01
Chr06	irgsp1_rep	CDS	27754602	27754750	.	+	0	Parent=Os06t0670000-01
Chr06	irgsp1_rep	CDS	27755002	27755234	.	+	1	Parent=Os06t0670000-01
Chr06	irgsp1_rep	CDS	27755431	27755561	.	+	2	Parent=Os06t0670000-01
Chr06	irgsp1_rep	CDS	27755669	27755779	.	+	0	Parent=Os06t0670000-01
Chr06	irgsp1_rep	CDS	27755863	27755979	.	+	0	Parent=Os06t0670000-01
Chr06	irgsp1_rep	three_prime_UTR	27755980	27756326	.	+	.	Parent=Os06t0670000-01
Chr06	irgsp1_rep	mRNA	27756424	27760044	.	-	.	ID=Os06t0670100-01;Name=Os06t0670100-01;Locus_id=Os06g0670100;Note=Conserved hypothetical protein.;Transcript_evidence=AK102577 (DDBJ%2C Best hit);ORF_evidence=A3BEH8 (UniProt);NIAS_FLcDNA=J033097P03;Expression=AK102577;TENOR=Os06t0670100-01;KEGG=Os06t0670100-01
Chr06	irgsp1_rep	five_prime_UTR	27760003	27760044	.	-	.	Parent=Os06t0670100-01
Chr06	irgsp1_rep	CDS	27759865	27760002	.	-	0	Parent=Os06t0670100-01
Chr06	irgsp1_rep	CDS	27759669	27759726	.	-	0	Parent=Os06t0670100-01
Chr06	irgsp1_rep	CDS	27759508	27759581	.	-	2	Parent=Os06t0670100-01
Chr06	irgsp1_rep	CDS	27758288	27758380	.	-	0	Parent=Os06t0670100-01
Chr06	irgsp1_rep	CDS	27758146	27758216	.	-	0	Parent=Os06t0670100-01
Chr06	irgsp1_rep	CDS	27757372	27758050	.	-	1	Parent=Os06t0670100-01
Chr06	irgsp1_rep	CDS	27757195	27757277	.	-	0	Parent=Os06t0670100-01
Chr06	irgsp1_rep	CDS	27756912	27756957	.	-	1	Parent=Os06t0670100-01
Chr06	irgsp1_rep	three_prime_UTR	27756424	27756911	.	-	.	Parent=Os06t0670100-01
Chr06	irgsp1_rep	mRNA	27777556	27780675	.	+	.	ID=Os06t0670300-01;Name=Os06t0670300-01;Locus_id=Os06g0670300;RAP-DB Gene Symbol Synonym(s)=OsMPH1%2C OsMYB45;RAP-DB Gene Name Synonym(s)=MYB-like gene of Plant Height 1;Oryzabase Gene Symbol Synonym(s)=OsMPH1%2C MPH1%2C OsMYB45%2C MYB45%2C DLN171%2C OsDLN171;Oryzabase Gene Name Synonym(s)=MYB-like gene of Plant Height 1%2C transcription factor OsMYB45%2C MYB protein 45%2C DLN repressor 171%2C DLN motif protein 171;Note=MYB-like transcription factor%2C Regulation of plant height%2C Tolerance to cadmium stress;Transcript_evidence=AK070966;ORF_evidence=Q653M8;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeobox-like domain superfamily (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930),Myb domain%2C plants (IPR006447);NIAS_FLcDNA=J023069E21;Manual Curation=November 14%2C 2019;Literature_PMID=28708834,28969789;Oryzabase=21769;Expression=AK070966;TENOR=Os06t0670300-01;KEGG=Os06t0670300-01;Subcellular location=nucleus (GO:0005634)
Chr06	irgsp1_rep	five_prime_UTR	27777556	27777776	.	+	.	Parent=Os06t0670300-01
Chr06	irgsp1_rep	CDS	27777777	27777900	.	+	0	Parent=Os06t0670300-01
Chr06	irgsp1_rep	CDS	27778882	27778958	.	+	2	Parent=Os06t0670300-01
Chr06	irgsp1_rep	CDS	27779122	27779315	.	+	0	Parent=Os06t0670300-01
Chr06	irgsp1_rep	CDS	27779432	27779519	.	+	1	Parent=Os06t0670300-01
Chr06	irgsp1_rep	CDS	27779969	27780256	.	+	0	Parent=Os06t0670300-01
Chr06	irgsp1_rep	three_prime_UTR	27780257	27780675	.	+	.	Parent=Os06t0670300-01
Chr06	irgsp1_rep	mRNA	27782932	27791010	.	+	.	ID=Os06t0670400-00;Name=Os06t0670400-00;Locus_id=Os06g0670400;CGSNL Gene Symbol=CYP59A;CGSNL Gene Name=CYCLOPHILIN 59A;Oryzabase Gene Symbol Synonym(s)=OsCYP59a%2C OsCYP-14%2C OsCYP59-1;Oryzabase Gene Name Synonym(s)=cyclophilin 59a%2C cyclophilin 14;Note=Similar to CYP59 (CYCLOPHILIN 59)%3B RNA binding / nucleic acid binding / peptidyl-prolyl cis-trans isomerase.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_175776.2 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);InterPro=RNA recognition motif domain (IPR000504),Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type (IPR002130),Nucleotide-binding%2C alpha-beta plait (IPR012677),Cyclophilin-like (IPR015891);Oryzabase=10073;TENOR=Os06t0670400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	27782932	27783029	.	+	0	Parent=Os06t0670400-00
Chr06	irgsp1_rep	CDS	27785158	27785262	.	+	1	Parent=Os06t0670400-00
Chr06	irgsp1_rep	CDS	27785396	27785513	.	+	1	Parent=Os06t0670400-00
Chr06	irgsp1_rep	CDS	27785636	27785686	.	+	0	Parent=Os06t0670400-00
Chr06	irgsp1_rep	CDS	27785790	27785881	.	+	0	Parent=Os06t0670400-00
Chr06	irgsp1_rep	CDS	27786013	27786112	.	+	1	Parent=Os06t0670400-00
Chr06	irgsp1_rep	CDS	27786418	27786537	.	+	0	Parent=Os06t0670400-00
Chr06	irgsp1_rep	CDS	27786630	27786698	.	+	0	Parent=Os06t0670400-00
Chr06	irgsp1_rep	CDS	27786952	27786998	.	+	0	Parent=Os06t0670400-00
Chr06	irgsp1_rep	CDS	27787081	27787136	.	+	1	Parent=Os06t0670400-00
Chr06	irgsp1_rep	CDS	27790381	27790513	.	+	2	Parent=Os06t0670400-00
Chr06	irgsp1_rep	CDS	27790590	27791010	.	+	1	Parent=Os06t0670400-00
Chr06	irgsp1_rep	mRNA	27792515	27798510	.	+	.	ID=Os06t0670500-01;Name=Os06t0670500-01;Locus_id=Os06g0670500;CGSNL Gene Symbol=CYP59B;CGSNL Gene Name=CYCLOPHILIN 59B;Oryzabase Gene Symbol Synonym(s)=OsCYP59b%2C OsCYP-15%2C OsCYP59-2;Oryzabase Gene Name Synonym(s)=cyclophilin 59b%2C cyclophilin 15;Note=Similar to Multidomain cyclophilin type peptidyl-prolyl cis-trans isomerase.;Transcript_evidence=AK072223 (DDBJ%2C Best hit),AK099323 (DDBJ%2C Best hit);ORF_evidence=NP_175776.2 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA recognition motif domain (IPR000504),Zinc finger%2C CCHC-type (IPR001878),Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type (IPR002130),Nucleotide-binding%2C alpha-beta plait (IPR012677),Zinc finger%2C CCHC retroviral-type (IPR013084),Cyclophilin-like (IPR015891);NIAS_FLcDNA=J013166F20,J033008G16;Oryzabase=10074;TENOR=Os06t0670500-01
Chr06	irgsp1_rep	five_prime_UTR	27792515	27792759	.	+	.	Parent=Os06t0670500-01
Chr06	irgsp1_rep	CDS	27792760	27792857	.	+	0	Parent=Os06t0670500-01
Chr06	irgsp1_rep	CDS	27793384	27793488	.	+	1	Parent=Os06t0670500-01
Chr06	irgsp1_rep	CDS	27793568	27793685	.	+	1	Parent=Os06t0670500-01
Chr06	irgsp1_rep	CDS	27793833	27793883	.	+	0	Parent=Os06t0670500-01
Chr06	irgsp1_rep	CDS	27793981	27794072	.	+	0	Parent=Os06t0670500-01
Chr06	irgsp1_rep	CDS	27794211	27794310	.	+	1	Parent=Os06t0670500-01
Chr06	irgsp1_rep	CDS	27794671	27794790	.	+	0	Parent=Os06t0670500-01
Chr06	irgsp1_rep	CDS	27794880	27794957	.	+	0	Parent=Os06t0670500-01
Chr06	irgsp1_rep	CDS	27795121	27795167	.	+	0	Parent=Os06t0670500-01
Chr06	irgsp1_rep	CDS	27795250	27795305	.	+	1	Parent=Os06t0670500-01
Chr06	irgsp1_rep	CDS	27795946	27795986	.	+	2	Parent=Os06t0670500-01
Chr06	irgsp1_rep	CDS	27796223	27796328	.	+	0	Parent=Os06t0670500-01
Chr06	irgsp1_rep	CDS	27797544	27797676	.	+	2	Parent=Os06t0670500-01
Chr06	irgsp1_rep	CDS	27797749	27798298	.	+	1	Parent=Os06t0670500-01
Chr06	irgsp1_rep	three_prime_UTR	27798299	27798510	.	+	.	Parent=Os06t0670500-01
Chr06	irgsp1_rep	mRNA	27797838	27798501	.	+	.	ID=Os06t0670500-02;Name=Os06t0670500-02;Locus_id=Os06g0670500;CGSNL Gene Symbol=CYP59B;CGSNL Gene Name=CYCLOPHILIN 59B;Oryzabase Gene Symbol Synonym(s)=OsCYP59b%2C OsCYP-15%2C OsCYP59-2;Oryzabase Gene Name Synonym(s)=cyclophilin 59b%2C cyclophilin 15;Note=Hypothetical conserved gene.;Transcript_evidence=AK059079 (DDBJ%2C Best hit);ORF_evidence=B8B172 (UniProt);NIAS_FLcDNA=001-022-A09;Oryzabase=10074;Expression=AK059079;TENOR=Os06t0670500-02;KEGG=Os06t0670500-02 (EC:5.2.1.8)
Chr06	irgsp1_rep	five_prime_UTR	27797838	27797839	.	+	.	Parent=Os06t0670500-02
Chr06	irgsp1_rep	CDS	27797840	27798298	.	+	0	Parent=Os06t0670500-02
Chr06	irgsp1_rep	three_prime_UTR	27798299	27798501	.	+	.	Parent=Os06t0670500-02
Chr06	irgsp1_rep	mRNA	27800857	27802149	.	+	.	ID=Os06t0670633-00;Name=Os06t0670633-00;Locus_id=Os06g0670633;Note=Similar to embryo-sac basal-endosperm layer embryo-surrounding-region.;Transcript_evidence=AJ437283 (DDBJ);ORF_evidence=NP_001105581.1 (RefSeq);InterPro=Glucoamylase%2C putatuve (IPR004314);TENOR=Os06t0670633-00
Chr06	irgsp1_rep	CDS	27800857	27801039	.	+	0	Parent=Os06t0670633-00
Chr06	irgsp1_rep	CDS	27801157	27801210	.	+	0	Parent=Os06t0670633-00
Chr06	irgsp1_rep	CDS	27801317	27801454	.	+	0	Parent=Os06t0670633-00
Chr06	irgsp1_rep	CDS	27801784	27802149	.	+	0	Parent=Os06t0670633-00
Chr06	irgsp1_rep	mRNA	27819964	27827289	.	+	.	ID=Os06t0671000-01;Name=Os06t0671000-01;Locus_id=Os06g0671000;CGSNL Gene Symbol=HAK13;CGSNL Gene Name=HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 13;Oryzabase Gene Symbol Synonym(s)=OsHAK13;Oryzabase Gene Name Synonym(s)=High-affinity Potassium(K+) Transporter 13%2C Probable potassium transporter 13;Note=Similar to Potassium transporter 1 (AtPOT1) (AtKUP1) (AtKT1).;Transcript_evidence=AK111663 (DDBJ%2C Best hit);ORF_evidence=B6U7Z6 (UniProt);GO=Biological Process: potassium ion transmembrane transport (GO:0071805),Cellular Component: membrane (GO:0016020),Molecular Function: potassium ion transmembrane transporter activity (GO:0015079);InterPro=K+ potassium transporter (IPR003855);NIAS_FLcDNA=J013156F08;Oryzabase=8667;Expression=AK111663;TENOR=Os06t0671000-01;KEGG=Os06t0671000-01
Chr06	irgsp1_rep	five_prime_UTR	27819964	27820085	.	+	.	Parent=Os06t0671000-01
Chr06	irgsp1_rep	five_prime_UTR	27820198	27820332	.	+	.	Parent=Os06t0671000-01
Chr06	irgsp1_rep	CDS	27820333	27820395	.	+	0	Parent=Os06t0671000-01
Chr06	irgsp1_rep	CDS	27821226	27821457	.	+	0	Parent=Os06t0671000-01
Chr06	irgsp1_rep	CDS	27821564	27821812	.	+	2	Parent=Os06t0671000-01
Chr06	irgsp1_rep	CDS	27822120	27822170	.	+	2	Parent=Os06t0671000-01
Chr06	irgsp1_rep	CDS	27822329	27822589	.	+	2	Parent=Os06t0671000-01
Chr06	irgsp1_rep	CDS	27822672	27822724	.	+	2	Parent=Os06t0671000-01
Chr06	irgsp1_rep	CDS	27822854	27822968	.	+	0	Parent=Os06t0671000-01
Chr06	irgsp1_rep	CDS	27825319	27825573	.	+	2	Parent=Os06t0671000-01
Chr06	irgsp1_rep	CDS	27826076	27827133	.	+	2	Parent=Os06t0671000-01
Chr06	irgsp1_rep	three_prime_UTR	27827134	27827289	.	+	.	Parent=Os06t0671000-01
Chr06	irgsp1_rep	mRNA	27825282	27827125	.	-	.	ID=Os06t0671075-00;Name=Os06t0671075-00;Locus_id=Os06g0671075;Note=Hypothetical gene.;Transcript_evidence=EU967027 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0671075-00;KEGG=Os06t0671075-00
Chr06	irgsp1_rep	five_prime_UTR	27826758	27827125	.	-	.	Parent=Os06t0671075-00
Chr06	irgsp1_rep	CDS	27826410	27826757	.	-	0	Parent=Os06t0671075-00
Chr06	irgsp1_rep	three_prime_UTR	27826049	27826409	.	-	.	Parent=Os06t0671075-00
Chr06	irgsp1_rep	three_prime_UTR	27825282	27825613	.	-	.	Parent=Os06t0671075-00
Chr06	irgsp1_rep	mRNA	27830245	27831323	.	-	.	ID=Os06t0671150-00;Name=Os06t0671150-00;Locus_id=Os06g0671150;CGSNL Gene Symbol=SAUR25;CGSNL Gene Name=SMALL AUXIN-UP RNA 25;Oryzabase Gene Symbol Synonym(s)=OsSAUR25;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 25;Note=Auxin responsive SAUR protein family protein.;Transcript_evidence=CT836257 (DDBJ%2C Best hit);ORF_evidence=NP_001148237.1 (RefSeq);InterPro=Auxin responsive SAUR protein (IPR003676);Oryzabase=9150;TENOR=Os06t0671150-00;KEGG=Os06t0671150-00
Chr06	irgsp1_rep	five_prime_UTR	27831204	27831323	.	-	.	Parent=Os06t0671150-00
Chr06	irgsp1_rep	CDS	27830781	27831203	.	-	0	Parent=Os06t0671150-00
Chr06	irgsp1_rep	three_prime_UTR	27830245	27830780	.	-	.	Parent=Os06t0671150-00
Chr06	irgsp1_rep	mRNA	27844656	27847779	.	-	.	ID=Os06t0671300-01;Name=Os06t0671300-01;Locus_id=Os06g0671300;Note=CytoChrome P450 family protein.;Transcript_evidence=AK108697 (DDBJ%2C Best hit);ORF_evidence=Q652J2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=002-149-G09;Expression=AK108697;TENOR=Os06t0671300-01;KEGG=Os06t0671300-01
Chr06	irgsp1_rep	CDS	27847249	27847779	.	-	0	Parent=Os06t0671300-01
Chr06	irgsp1_rep	CDS	27844748	27845380	.	-	0	Parent=Os06t0671300-01
Chr06	irgsp1_rep	three_prime_UTR	27844656	27844747	.	-	.	Parent=Os06t0671300-01
Chr06	irgsp1_rep	mRNA	27844809	27848203	.	+	.	ID=Os06t0671375-00;Name=Os06t0671375-00;Locus_id=Os06g0671375;Note=Hypothetical protein.;Transcript_evidence=tplb0024g24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0671375-00
Chr06	irgsp1_rep	five_prime_UTR	27844809	27845349	.	+	.	Parent=Os06t0671375-00
Chr06	irgsp1_rep	CDS	27845350	27845406	.	+	0	Parent=Os06t0671375-00
Chr06	irgsp1_rep	CDS	27847315	27848148	.	+	0	Parent=Os06t0671375-00
Chr06	irgsp1_rep	three_prime_UTR	27848149	27848203	.	+	.	Parent=Os06t0671375-00
Chr06	irgsp1_rep	mRNA	27862160	27862997	.	+	.	ID=Os06t0671600-01;Name=Os06t0671600-01;Locus_id=Os06g0671600;CGSNL Gene Symbol=SAUR26;CGSNL Gene Name=SMALL AUXIN-UP RNA 26;Oryzabase Gene Symbol Synonym(s)=OsSAUR26;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 26;Note=Beta tubulin%2C autoregulation binding site domain containing protein.;Transcript_evidence=AK111011 (DDBJ%2C Best hit);ORF_evidence=B8B176 (UniProt);NIAS_FLcDNA=002-174-F10;Oryzabase=9151;Expression=AK111011;TENOR=Os06t0671600-01;KEGG=Os06t0671600-01
Chr06	irgsp1_rep	five_prime_UTR	27862160	27862247	.	+	.	Parent=Os06t0671600-01
Chr06	irgsp1_rep	CDS	27862248	27862375	.	+	0	Parent=Os06t0671600-01
Chr06	irgsp1_rep	CDS	27862633	27862726	.	+	1	Parent=Os06t0671600-01
Chr06	irgsp1_rep	three_prime_UTR	27862727	27862997	.	+	.	Parent=Os06t0671600-01
Chr06	irgsp1_rep	mRNA	27871848	27874358	.	+	.	ID=Os06t0671700-01;Name=Os06t0671700-01;Locus_id=Os06g0671700;Note=Similar to toprim domain-containing protein.;Transcript_evidence=AK108468 (DDBJ%2C Best hit);ORF_evidence=NP_849735.1 (RefSeq);GO=Biological Process: DNA replication (GO:0006260),Molecular Function: DNA helicase activity (GO:0003678),Molecular Function: ATP binding (GO:0005524);InterPro=DNA helicase%2C DnaB-like%2C C-terminal (IPR007694);NIAS_FLcDNA=002-143-E03;Expression=AK108468;TENOR=Os06t0671700-01;KEGG=Os06t0671700-01
Chr06	irgsp1_rep	five_prime_UTR	27871848	27871849	.	+	.	Parent=Os06t0671700-01
Chr06	irgsp1_rep	CDS	27871850	27871911	.	+	0	Parent=Os06t0671700-01
Chr06	irgsp1_rep	CDS	27872151	27872234	.	+	1	Parent=Os06t0671700-01
Chr06	irgsp1_rep	CDS	27872552	27872683	.	+	1	Parent=Os06t0671700-01
Chr06	irgsp1_rep	CDS	27873206	27873302	.	+	1	Parent=Os06t0671700-01
Chr06	irgsp1_rep	CDS	27873390	27873524	.	+	0	Parent=Os06t0671700-01
Chr06	irgsp1_rep	CDS	27873641	27873708	.	+	0	Parent=Os06t0671700-01
Chr06	irgsp1_rep	CDS	27873873	27873969	.	+	1	Parent=Os06t0671700-01
Chr06	irgsp1_rep	three_prime_UTR	27873970	27874358	.	+	.	Parent=Os06t0671700-01
Chr06	irgsp1_rep	mRNA	27875114	27878195	.	+	.	ID=Os06t0671800-01;Name=Os06t0671800-01;Locus_id=Os06g0671800;Note=Similar to patellin-5.;Transcript_evidence=AK288329 (DDBJ%2C Best hit);ORF_evidence=B6TB19 (UniProt);InterPro=Cellular retinaldehyde-binding/triple function%2C C-terminal (IPR001251),Cellular retinaldehyde-binding/triple function%2C N-terminal (IPR008273),Phosphatidylinositol transfer protein-like%2C N-terminal (IPR011074);NIAS_FLcDNA=J090022I09;TENOR=Os06t0671800-01;KEGG=Os06t0671800-01
Chr06	irgsp1_rep	five_prime_UTR	27875114	27875387	.	+	.	Parent=Os06t0671800-01
Chr06	irgsp1_rep	CDS	27875388	27876479	.	+	0	Parent=Os06t0671800-01
Chr06	irgsp1_rep	three_prime_UTR	27876480	27878195	.	+	.	Parent=Os06t0671800-01
Chr06	irgsp1_rep	mRNA	27877526	27880124	.	-	.	ID=Os06t0671900-01;Name=Os06t0671900-01;Locus_id=Os06g0671900;CGSNL Gene Symbol=TUB3;CGSNL Gene Name=BETA-TUBULIN 3;Oryzabase Gene Symbol Synonym(s)=OsTUB3%2C TUBB3%2C RTUB-2;Oryzabase Gene Name Synonym(s)=beta tubulin 3%2C Tubulin beta-3 chain%2C Beta-3-tubulin%2C beta tubulin 2;Note=Similar to Tubulin beta-3 chain.;Transcript_evidence=AK069237 (DDBJ%2C Best hit);ORF_evidence=Q40665 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: microtubule-based process (GO:0007017),Biological Process: microtubule-based movement (GO:0007018),Biological Process: protein polymerization (GO:0051258),Cellular Component: microtubule (GO:0005874),Cellular Component: protein complex (GO:0043234),Molecular Function: GTPase activity (GO:0003924),Molecular Function: structural molecule activity (GO:0005198),Molecular Function: GTP binding (GO:0005525);InterPro=Tubulin (IPR000217),Beta tubulin (IPR002453),Tubulin/FtsZ%2C GTPase domain (IPR003008),Tubulin/FtsZ%2C C-terminal (IPR008280),Beta tubulin%2C autoregulation binding site (IPR013838),Tubulin%2C conserved site (IPR017975),Tubulin/FtsZ%2C 2-layer sandwich domain (IPR018316),Tubulin%2C C-terminal (IPR023123);NIAS_FLcDNA=J023010B07;Oryzabase=2958;Expression=AK069237;TENOR=Os06t0671900-01;KEGG=Os06t0671900-01
Chr06	irgsp1_rep	five_prime_UTR	27880033	27880124	.	-	.	Parent=Os06t0671900-01
Chr06	irgsp1_rep	CDS	27879639	27880032	.	-	0	Parent=Os06t0671900-01
Chr06	irgsp1_rep	CDS	27879124	27879393	.	-	2	Parent=Os06t0671900-01
Chr06	irgsp1_rep	CDS	27877891	27878567	.	-	2	Parent=Os06t0671900-01
Chr06	irgsp1_rep	three_prime_UTR	27877526	27877890	.	-	.	Parent=Os06t0671900-01
Chr06	irgsp1_rep	mRNA	27904696	27906541	.	-	.	ID=Os06t0672400-01;Name=Os06t0672400-01;Locus_id=Os06g0672400;CGSNL Gene Symbol=G1L2;CGSNL Gene Name=G1 LIKE PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsG1L2;Note=Protein of unknown function DUF640 domain containing protein.;Transcript_evidence=AK068794 (DDBJ%2C Best hit);ORF_evidence=D1MYE3 (UniProt);InterPro=Domain of unknown function DUF640 (IPR006936);NIAS_FLcDNA=J013162N11;Oryzabase=8883;Expression=AK068794;TENOR=Os06t0672400-01;KEGG=Os06t0672400-01
Chr06	irgsp1_rep	five_prime_UTR	27906445	27906541	.	-	.	Parent=Os06t0672400-01
Chr06	irgsp1_rep	five_prime_UTR	27905778	27905822	.	-	.	Parent=Os06t0672400-01
Chr06	irgsp1_rep	CDS	27904944	27905777	.	-	0	Parent=Os06t0672400-01
Chr06	irgsp1_rep	three_prime_UTR	27904696	27904943	.	-	.	Parent=Os06t0672400-01
Chr06	irgsp1_rep	mRNA	27923541	27926280	.	-	.	ID=Os06t0672700-01;Name=Os06t0672700-01;Locus_id=Os06g0672700;Note=Conserved hypothetical protein.;Transcript_evidence=AK101470 (DDBJ%2C Best hit);ORF_evidence=NP_001058337.1 (RefSeq);NIAS_FLcDNA=J033040K01;TENOR=Os06t0672700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	27924672	27926280	.	-	.	Parent=Os06t0672700-01
Chr06	irgsp1_rep	CDS	27924363	27924671	.	-	0	Parent=Os06t0672700-01
Chr06	irgsp1_rep	three_prime_UTR	27923541	27924362	.	-	.	Parent=Os06t0672700-01
Chr06	irgsp1_rep	mRNA	27929735	27932433	.	-	.	ID=Os06t0672801-01;Name=Os06t0672801-01;Locus_id=Os06g0672801;Note=Conserved hypothetical protein.;Transcript_evidence=AK243492 (DDBJ%2C Best hit);ORF_evidence=NP_001174952.1 (RefSeq);NIAS_FLcDNA=J100073P15;TENOR=Os06t0672801-01;KEGG=Os06t0672801-01
Chr06	irgsp1_rep	five_prime_UTR	27932343	27932433	.	-	.	Parent=Os06t0672801-01
Chr06	irgsp1_rep	CDS	27932334	27932342	.	-	0	Parent=Os06t0672801-01
Chr06	irgsp1_rep	CDS	27930875	27931089	.	-	0	Parent=Os06t0672801-01
Chr06	irgsp1_rep	CDS	27930031	27930283	.	-	1	Parent=Os06t0672801-01
Chr06	irgsp1_rep	three_prime_UTR	27929735	27930030	.	-	.	Parent=Os06t0672801-01
Chr06	irgsp1_rep	mRNA	27953467	27956675	.	-	.	ID=Os06t0673300-01;Name=Os06t0673300-01;Locus_id=Os06g0673300;Note=Conserved hypothetical protein.;Transcript_evidence=AK070761 (DDBJ%2C Best hit);ORF_evidence=B9FQG4 (UniProt);NIAS_FLcDNA=J023067D20;Expression=AK070761;TENOR=Os06t0673300-01;KEGG=Os06t0673300-01
Chr06	irgsp1_rep	five_prime_UTR	27954574	27956675	.	-	.	Parent=Os06t0673300-01
Chr06	irgsp1_rep	CDS	27954196	27954573	.	-	0	Parent=Os06t0673300-01
Chr06	irgsp1_rep	three_prime_UTR	27953467	27954195	.	-	.	Parent=Os06t0673300-01
Chr06	irgsp1_rep	mRNA	27958671	27960089	.	-	.	ID=Os06t0673500-01;Name=Os06t0673500-01;Locus_id=Os06g0673500;Note=Similar to polyubiquitin containing 7 ubiquitin monomers.;Transcript_evidence=AK243474 (DDBJ%2C Best hit);ORF_evidence=NP_001147027.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin (IPR000626),Ubiquitin conserved site (IPR019954),Ubiquitin supergroup (IPR019955),Ubiquitin subgroup (IPR019956);NIAS_FLcDNA=J100072F13;TENOR=Os06t0673500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	27960088	27960089	.	-	.	Parent=Os06t0673500-01
Chr06	irgsp1_rep	CDS	27960022	27960087	.	-	0	Parent=Os06t0673500-01
Chr06	irgsp1_rep	CDS	27958764	27959327	.	-	0	Parent=Os06t0673500-01
Chr06	irgsp1_rep	three_prime_UTR	27958671	27958763	.	-	.	Parent=Os06t0673500-01
Chr06	irgsp1_rep	mRNA	27960874	27971323	.	+	.	ID=Os06t0673700-01;Name=Os06t0673700-01;Locus_id=Os06g0673700;Note=Hypothetical protein.;Transcript_evidence=AK066949 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013089M08;Expression=AK066949;TENOR=Os06t0673700-01;KEGG=Os06t0673700-01
Chr06	irgsp1_rep	five_prime_UTR	27960874	27960938	.	+	.	Parent=Os06t0673700-01
Chr06	irgsp1_rep	five_prime_UTR	27961192	27961264	.	+	.	Parent=Os06t0673700-01
Chr06	irgsp1_rep	five_prime_UTR	27968916	27969006	.	+	.	Parent=Os06t0673700-01
Chr06	irgsp1_rep	CDS	27969007	27969381	.	+	0	Parent=Os06t0673700-01
Chr06	irgsp1_rep	three_prime_UTR	27969382	27969749	.	+	.	Parent=Os06t0673700-01
Chr06	irgsp1_rep	three_prime_UTR	27969843	27970195	.	+	.	Parent=Os06t0673700-01
Chr06	irgsp1_rep	three_prime_UTR	27971299	27971323	.	+	.	Parent=Os06t0673700-01
Chr06	irgsp1_rep	mRNA	27962695	27964029	.	-	.	ID=Os06t0673800-01;Name=Os06t0673800-01;Locus_id=Os06g0673800;Note=Conserved hypothetical protein.;Transcript_evidence=AK066054 (DDBJ%2C Best hit);ORF_evidence=B8B181 (UniProt);NIAS_FLcDNA=J013050P13;Expression=AK066054;TENOR=Os06t0673800-01;KEGG=Os06t0673800-01
Chr06	irgsp1_rep	five_prime_UTR	27963909	27964029	.	-	.	Parent=Os06t0673800-01
Chr06	irgsp1_rep	CDS	27963564	27963908	.	-	0	Parent=Os06t0673800-01
Chr06	irgsp1_rep	three_prime_UTR	27962695	27963563	.	-	.	Parent=Os06t0673800-01
Chr06	irgsp1_rep	mRNA	27967268	27972701	.	-	.	ID=Os06t0674000-01;Name=Os06t0674000-01;Locus_id=Os06g0674000;Note=Conserved hypothetical protein.;Transcript_evidence=AK289087 (DDBJ%2C Best hit);ORF_evidence=NP_001058341.1 (RefSeq);NIAS_FLcDNA=J090095K03;TENOR=Os06t0674000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	27972287	27972701	.	-	.	Parent=Os06t0674000-01
Chr06	irgsp1_rep	five_prime_UTR	27970262	27972256	.	-	.	Parent=Os06t0674000-01
Chr06	irgsp1_rep	CDS	27969035	27970261	.	-	0	Parent=Os06t0674000-01
Chr06	irgsp1_rep	three_prime_UTR	27967268	27969034	.	-	.	Parent=Os06t0674000-01
Chr06	irgsp1_rep	mRNA	27975961	27979178	.	-	.	ID=Os06t0674100-01;Name=Os06t0674100-01;Locus_id=Os06g0674100;Note=Conserved hypothetical protein.;Transcript_evidence=AK240904 (DDBJ%2C Best hit);ORF_evidence=NP_001058342.2 (RefSeq);NIAS_FLcDNA=J065035I15;TENOR=Os06t0674100-01;KEGG=Os06t0674100-01
Chr06	irgsp1_rep	five_prime_UTR	27979047	27979178	.	-	.	Parent=Os06t0674100-01
Chr06	irgsp1_rep	CDS	27979006	27979046	.	-	0	Parent=Os06t0674100-01
Chr06	irgsp1_rep	CDS	27978826	27978883	.	-	1	Parent=Os06t0674100-01
Chr06	irgsp1_rep	CDS	27978595	27978723	.	-	0	Parent=Os06t0674100-01
Chr06	irgsp1_rep	CDS	27976179	27976406	.	-	0	Parent=Os06t0674100-01
Chr06	irgsp1_rep	three_prime_UTR	27975961	27976178	.	-	.	Parent=Os06t0674100-01
Chr06	irgsp1_rep	mRNA	27994830	27995268	.	+	.	ID=Os06t0674400-00;Name=Os06t0674400-00;Locus_id=Os06g0674400;Note=Conserved hypothetical protein.;Transcript_evidence=BT063809 (DDBJ);ORF_evidence=Q650S5 (UniProt);TENOR=Os06t0674400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	27994830	27994847	.	+	.	Parent=Os06t0674400-00
Chr06	irgsp1_rep	CDS	27994848	27995180	.	+	0	Parent=Os06t0674400-00
Chr06	irgsp1_rep	three_prime_UTR	27995181	27995268	.	+	.	Parent=Os06t0674400-00
Chr06	irgsp1_rep	mRNA	28007237	28011663	.	+	.	ID=Os06t0674800-01;Name=Os06t0674800-01;Locus_id=Os06g0674800;Note=Hypothetical conserved gene.;Transcript_evidence=AK241848 (DDBJ%2C Best hit);ORF_evidence=B9FQG9 (UniProt);NIAS_FLcDNA=J065214N19;TENOR=Os06t0674800-01;KEGG=Os06t0674800-01
Chr06	irgsp1_rep	five_prime_UTR	28007237	28007284	.	+	.	Parent=Os06t0674800-01
Chr06	irgsp1_rep	CDS	28007285	28007448	.	+	0	Parent=Os06t0674800-01
Chr06	irgsp1_rep	CDS	28007705	28007828	.	+	1	Parent=Os06t0674800-01
Chr06	irgsp1_rep	CDS	28007969	28008485	.	+	0	Parent=Os06t0674800-01
Chr06	irgsp1_rep	CDS	28008596	28008726	.	+	2	Parent=Os06t0674800-01
Chr06	irgsp1_rep	CDS	28008814	28009224	.	+	0	Parent=Os06t0674800-01
Chr06	irgsp1_rep	three_prime_UTR	28009225	28009231	.	+	.	Parent=Os06t0674800-01
Chr06	irgsp1_rep	three_prime_UTR	28009343	28010899	.	+	.	Parent=Os06t0674800-01
Chr06	irgsp1_rep	three_prime_UTR	28011148	28011663	.	+	.	Parent=Os06t0674800-01
Chr06	irgsp1_rep	mRNA	28018171	28019815	.	-	.	ID=Os06t0675200-01;Name=Os06t0675200-01;Locus_id=Os06g0675200;RAP-DB Gene Symbol Synonym(s)=LIN1;RAP-DB Gene Name Synonym(s)=LONG GRAIN 1;CGSNL Gene Symbol=LIN1;CGSNL Gene Name=LONG GRAIN 1;Oryzabase Gene Symbol Synonym(s)=OsLIN1;Note=Regulation of grain length;Transcript_evidence=AK060681,AK102712;ORF_evidence=Q651H6;NIAS_FLcDNA=001-029-D12,J033104O20;Manual Curation=April 7%2C 2020;Literature_PMID=DOI:10.1007/s11032-019-1032-1;Oryzabase=23581;Expression=AK060681;TENOR=Os06t0675200-01;KEGG=Os06t0675200-01
Chr06	irgsp1_rep	five_prime_UTR	28019679	28019815	.	-	.	Parent=Os06t0675200-01
Chr06	irgsp1_rep	CDS	28018440	28019678	.	-	0	Parent=Os06t0675200-01
Chr06	irgsp1_rep	three_prime_UTR	28018171	28018439	.	-	.	Parent=Os06t0675200-01
Chr06	irgsp1_rep	mRNA	28018457	28020392	.	+	.	ID=Os06t0675300-01;Name=Os06t0675300-01;Locus_id=Os06g0675300;Note=Hypothetical protein.;Transcript_evidence=AK109610 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-137-G02;Expression=AK109610;TENOR=Os06t0675300-01;KEGG=Os06t0675300-01
Chr06	irgsp1_rep	five_prime_UTR	28018457	28018527	.	+	.	Parent=Os06t0675300-01
Chr06	irgsp1_rep	CDS	28018528	28019694	.	+	0	Parent=Os06t0675300-01
Chr06	irgsp1_rep	three_prime_UTR	28019695	28020392	.	+	.	Parent=Os06t0675300-01
Chr06	irgsp1_rep	mRNA	28037569	28041881	.	+	.	ID=Os06t0675600-01;Name=Os06t0675600-01;Locus_id=Os06g0675600;RAP-DB Gene Symbol Synonym(s)=OsY37%2C ONAC011;RAP-DB Gene Name Synonym(s)=Oryza sativa Yellow37;CGSNL Gene Symbol=Y37;CGSNL Gene Name=YELLOW 37;Oryzabase Gene Symbol Synonym(s)=NAC11%2C ONAC011%2C ONAC11%2C OMTN4%2C OsY37%2C OsY37N%2C OsY37I%2C OsNAC1%2C DLN172%2C OsDLN172;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 011%2C NAC domain-containing protein 11%2C miR164-targeted NAC4%2C Oryza miR164-targeted NAC4%2C Yellow37%2C Yellow 37%2C DLN repressor 172%2C DLN motif protein 172;Note=NAC transcription factor%2C Positive regulator of heading and senescence during the reproductive phase;Transcript_evidence=AK063648;ORF_evidence=Q653V8;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=NAC domain superfamily (IPR036093),NAC domain (IPR003441);NIAS_FLcDNA=001-119-A03;Manual Curation=October 25%2C 2017;Literature_PMID=29039754;Oryzabase=11461;Expression=AK063648;TENOR=Os06t0675600-01;KEGG=Os06t0675600-01;Subcellular location=nucleus (GO:0005634)
Chr06	irgsp1_rep	five_prime_UTR	28037569	28037854	.	+	.	Parent=Os06t0675600-01
Chr06	irgsp1_rep	CDS	28037855	28038074	.	+	0	Parent=Os06t0675600-01
Chr06	irgsp1_rep	CDS	28040068	28040339	.	+	2	Parent=Os06t0675600-01
Chr06	irgsp1_rep	CDS	28041218	28041640	.	+	0	Parent=Os06t0675600-01
Chr06	irgsp1_rep	three_prime_UTR	28041641	28041881	.	+	.	Parent=Os06t0675600-01
Chr06	irgsp1_rep	mRNA	28045479	28054033	.	-	.	ID=Os06t0675700-01;Name=Os06t0675700-01;Locus_id=Os06g0675700;Note=Similar to High pI alpha-glucosidase.;Transcript_evidence=AK119824 (DDBJ%2C Best hit);ORF_evidence=Q9LLY2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Glycoside hydrolase%2C family 31 (IPR000322),Glycoside hydrolase-type carbohydrate-binding (IPR011013),Aldolase-type TIM barrel (IPR013785),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=002-177-D07;Expression=AK119824;TENOR=Os06t0675700-01;KEGG=Os06t0675700-01 (EC:3.2.1.20)
Chr06	irgsp1_rep	five_prime_UTR	28053953	28054033	.	-	.	Parent=Os06t0675700-01
Chr06	irgsp1_rep	CDS	28053726	28053952	.	-	0	Parent=Os06t0675700-01
Chr06	irgsp1_rep	CDS	28047584	28048245	.	-	1	Parent=Os06t0675700-01
Chr06	irgsp1_rep	CDS	28047266	28047496	.	-	2	Parent=Os06t0675700-01
Chr06	irgsp1_rep	CDS	28046542	28047182	.	-	2	Parent=Os06t0675700-01
Chr06	irgsp1_rep	CDS	28045569	28046465	.	-	0	Parent=Os06t0675700-01
Chr06	irgsp1_rep	three_prime_UTR	28045479	28045568	.	-	.	Parent=Os06t0675700-01
Chr06	irgsp1_rep	mRNA	28054442	28058005	.	-	.	ID=Os06t0675900-01;Name=Os06t0675900-01;Locus_id=Os06g0675900;Note=Similar to High pI alpha-glucosidase.;Transcript_evidence=AK065487 (DDBJ%2C Best hit);ORF_evidence=NP_001174953.1 (RefSeq);NIAS_FLcDNA=J013003I22;TENOR=Os06t0675900-01;KEGG=Os06t0675900-01
Chr06	irgsp1_rep	five_prime_UTR	28058004	28058005	.	-	.	Parent=Os06t0675900-01
Chr06	irgsp1_rep	CDS	28057626	28058003	.	-	0	Parent=Os06t0675900-01
Chr06	irgsp1_rep	three_prime_UTR	28054442	28057625	.	-	.	Parent=Os06t0675900-01
Chr06	irgsp1_rep	mRNA	28059549	28065154	.	-	.	ID=Os06t0676000-01;Name=Os06t0676000-01;Locus_id=Os06g0676000;RAP-DB Gene Symbol Synonym(s)=NRAMP3%2C OsNramp3%2C OsNRAMP3;RAP-DB Gene Name Synonym(s)=BACTERIOCIDE EFFECT 3%2C homologues of mammalian Nramp3 gene%2C Integral membrane protein OsNramp3;CGSNL Gene Symbol=NRAMP3;CGSNL Gene Name=BACTERIOCIDE EFFECT 3;Oryzabase Gene Symbol Synonym(s)=OsNramp3%2C OsNRAMP3;Oryzabase Gene Name Synonym(s)=homologues of mammalian Nramp3 gene%2C Integral membrane protein OsNramp3;Note=Integral membrane protein%2C Metal ion transport;Transcript_evidence=U60767 (Genbank),AK065481 (Genbank);ORF_evidence=P93428 (UniProt),Q653V6 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Natural resistance-associated macrophage protein (IPR001046);NIAS_FLcDNA=J013007J10;Manual Curation=August 2%2C 2009;Literature_PMID=9154989;Oryzabase=6245;TENOR=Os06t0676000-01;KEGG=Os06t0676000-01
Chr06	irgsp1_rep	five_prime_UTR	28064927	28065154	.	-	.	Parent=Os06t0676000-01
Chr06	irgsp1_rep	five_prime_UTR	28064146	28064184	.	-	.	Parent=Os06t0676000-01
Chr06	irgsp1_rep	CDS	28064017	28064145	.	-	0	Parent=Os06t0676000-01
Chr06	irgsp1_rep	CDS	28063584	28063662	.	-	0	Parent=Os06t0676000-01
Chr06	irgsp1_rep	CDS	28063461	28063501	.	-	2	Parent=Os06t0676000-01
Chr06	irgsp1_rep	CDS	28063223	28063301	.	-	0	Parent=Os06t0676000-01
Chr06	irgsp1_rep	CDS	28063013	28063117	.	-	2	Parent=Os06t0676000-01
Chr06	irgsp1_rep	CDS	28062627	28062736	.	-	2	Parent=Os06t0676000-01
Chr06	irgsp1_rep	CDS	28062168	28062349	.	-	0	Parent=Os06t0676000-01
Chr06	irgsp1_rep	CDS	28062014	28062083	.	-	1	Parent=Os06t0676000-01
Chr06	irgsp1_rep	CDS	28061599	28061772	.	-	0	Parent=Os06t0676000-01
Chr06	irgsp1_rep	CDS	28061171	28061275	.	-	0	Parent=Os06t0676000-01
Chr06	irgsp1_rep	CDS	28060498	28060629	.	-	0	Parent=Os06t0676000-01
Chr06	irgsp1_rep	CDS	28060261	28060356	.	-	0	Parent=Os06t0676000-01
Chr06	irgsp1_rep	CDS	28059825	28060175	.	-	0	Parent=Os06t0676000-01
Chr06	irgsp1_rep	three_prime_UTR	28059549	28059824	.	-	.	Parent=Os06t0676000-01
Chr06	irgsp1_rep	mRNA	28080797	28083063	.	+	.	ID=Os06t0676300-02;Name=Os06t0676300-02;Locus_id=Os06g0676300;Note=Non-protein coding transcript.;Transcript_evidence=AK064503 (DDBJ%2C Best hit),AK071620 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-111-D07,J023102H03;TENOR=Os06t0676300-02
Chr06	irgsp1_rep	exon	28080797	28083063	.	+	.	Parent=Os06t0676300-02
Chr06	irgsp1_rep	mRNA	28083583	28086362	.	+	.	ID=Os06t0676400-01;Name=Os06t0676400-01;Locus_id=Os06g0676400;Note=Conserved hypothetical protein.;Transcript_evidence=AK119775 (DDBJ%2C Best hit);ORF_evidence=B9FZQ8 (UniProt);NIAS_FLcDNA=002-172-G07;TENOR=Os06t0676400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	28083583	28084613	.	+	.	Parent=Os06t0676400-01
Chr06	irgsp1_rep	CDS	28084614	28084703	.	+	0	Parent=Os06t0676400-01
Chr06	irgsp1_rep	three_prime_UTR	28084704	28086099	.	+	.	Parent=Os06t0676400-01
Chr06	irgsp1_rep	three_prime_UTR	28086173	28086362	.	+	.	Parent=Os06t0676400-01
Chr06	irgsp1_rep	mRNA	28089151	28091496	.	+	.	ID=Os06t0676500-01;Name=Os06t0676500-01;Locus_id=Os06g0676500;Note=Hypothetical protein.;Transcript_evidence=AK069470 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023023D14;Expression=AK069470;TENOR=Os06t0676500-01;KEGG=Os06t0676500-01
Chr06	irgsp1_rep	five_prime_UTR	28089151	28089652	.	+	.	Parent=Os06t0676500-01
Chr06	irgsp1_rep	CDS	28089653	28089925	.	+	0	Parent=Os06t0676500-01
Chr06	irgsp1_rep	three_prime_UTR	28089926	28091496	.	+	.	Parent=Os06t0676500-01
Chr06	irgsp1_rep	mRNA	28090119	28094397	.	-	.	ID=Os06t0676600-01;Name=Os06t0676600-01;Locus_id=Os06g0676600;CGSNL Gene Symbol=RLCK213;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 213;Oryzabase Gene Symbol Synonym(s)=OsRLCK213;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 213;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK103523 (DDBJ%2C Best hit);ORF_evidence=NP_001148145.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J033131K11;Oryzabase=18909;Expression=AK103523;TENOR=Os06t0676600-01;KEGG=Os06t0676600-01
Chr06	irgsp1_rep	five_prime_UTR	28094159	28094397	.	-	.	Parent=Os06t0676600-01
Chr06	irgsp1_rep	five_prime_UTR	28092528	28092641	.	-	.	Parent=Os06t0676600-01
Chr06	irgsp1_rep	CDS	28092458	28092527	.	-	0	Parent=Os06t0676600-01
Chr06	irgsp1_rep	CDS	28092218	28092333	.	-	2	Parent=Os06t0676600-01
Chr06	irgsp1_rep	CDS	28091933	28092143	.	-	0	Parent=Os06t0676600-01
Chr06	irgsp1_rep	CDS	28091606	28091843	.	-	2	Parent=Os06t0676600-01
Chr06	irgsp1_rep	CDS	28091168	28091318	.	-	1	Parent=Os06t0676600-01
Chr06	irgsp1_rep	CDS	28090466	28090828	.	-	0	Parent=Os06t0676600-01
Chr06	irgsp1_rep	three_prime_UTR	28090119	28090465	.	-	.	Parent=Os06t0676600-01
Chr06	irgsp1_rep	mRNA	28100801	28105862	.	+	.	ID=Os06t0676700-01;Name=Os06t0676700-01;Locus_id=Os06g0676700;Note=Similar to High pI alpha-glucosidase.;Transcript_evidence=AK105449 (DDBJ%2C Best hit);ORF_evidence=D1MDW3 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Glycoside hydrolase%2C family 31 (IPR000322),Glycoside hydrolase-type carbohydrate-binding (IPR011013),Aldolase-type TIM barrel (IPR013785),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-125-B12;Expression=AK105449;TENOR=Os06t0676700-01;KEGG=Os06t0676700-01 (EC:3.2.1.20)
Chr06	irgsp1_rep	five_prime_UTR	28100801	28100927	.	+	.	Parent=Os06t0676700-01
Chr06	irgsp1_rep	CDS	28100928	28101163	.	+	0	Parent=Os06t0676700-01
Chr06	irgsp1_rep	CDS	28102253	28102905	.	+	1	Parent=Os06t0676700-01
Chr06	irgsp1_rep	CDS	28102993	28103223	.	+	2	Parent=Os06t0676700-01
Chr06	irgsp1_rep	CDS	28104161	28104801	.	+	2	Parent=Os06t0676700-01
Chr06	irgsp1_rep	CDS	28104878	28105777	.	+	0	Parent=Os06t0676700-01
Chr06	irgsp1_rep	three_prime_UTR	28105778	28105862	.	+	.	Parent=Os06t0676700-01
Chr06	irgsp1_rep	mRNA	28100871	28105861	.	+	.	ID=Os06t0676700-02;Name=Os06t0676700-02;Locus_id=Os06g0676700;Note=Similar to High pI alpha-glucosidase.;Transcript_evidence=AK121588 (DDBJ%2C Best hit);ORF_evidence=D1MDW3 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Glycoside hydrolase%2C family 31 (IPR000322),Glycoside hydrolase-type carbohydrate-binding (IPR011013),Aldolase-type TIM barrel (IPR013785),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J033037N10;Expression=AK121588;TENOR=Os06t0676700-02;KEGG=Os06t0676700-02 (EC:3.2.1.20)
Chr06	irgsp1_rep	five_prime_UTR	28100871	28100927	.	+	.	Parent=Os06t0676700-02
Chr06	irgsp1_rep	CDS	28100928	28101163	.	+	0	Parent=Os06t0676700-02
Chr06	irgsp1_rep	CDS	28102253	28102905	.	+	1	Parent=Os06t0676700-02
Chr06	irgsp1_rep	CDS	28102993	28103223	.	+	2	Parent=Os06t0676700-02
Chr06	irgsp1_rep	CDS	28104161	28104801	.	+	2	Parent=Os06t0676700-02
Chr06	irgsp1_rep	CDS	28104878	28105777	.	+	0	Parent=Os06t0676700-02
Chr06	irgsp1_rep	three_prime_UTR	28105778	28105861	.	+	.	Parent=Os06t0676700-02
Chr06	irgsp1_rep	mRNA	28100871	28101359	.	+	.	ID=Os06t0676700-03;Name=Os06t0676700-03;Locus_id=Os06g0676700;Note=Similar to High pI alpha-glucosidase.;Transcript_evidence=AK063175 (DDBJ%2C Best hit);ORF_evidence=Q653V3 (UniProt);NIAS_FLcDNA=001-112-A05;Expression=AK063175;TENOR=Os06t0676700-03;KEGG=Os06t0676700-03 (EC:3.2.1.20)
Chr06	irgsp1_rep	five_prime_UTR	28100871	28100927	.	+	.	Parent=Os06t0676700-03
Chr06	irgsp1_rep	CDS	28100928	28101215	.	+	0	Parent=Os06t0676700-03
Chr06	irgsp1_rep	three_prime_UTR	28101216	28101359	.	+	.	Parent=Os06t0676700-03
Chr06	irgsp1_rep	mRNA	28102839	28105777	.	-	.	ID=Os06t0676801-00;Name=Os06t0676801-00;Locus_id=Os06g0676801;Note=Hypothetical gene.;Transcript_evidence=BT019289 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0676801-00
Chr06	irgsp1_rep	CDS	28105142	28105777	.	-	0	Parent=Os06t0676801-00
Chr06	irgsp1_rep	three_prime_UTR	28104876	28105141	.	-	.	Parent=Os06t0676801-00
Chr06	irgsp1_rep	three_prime_UTR	28104184	28104799	.	-	.	Parent=Os06t0676801-00
Chr06	irgsp1_rep	three_prime_UTR	28102992	28103244	.	-	.	Parent=Os06t0676801-00
Chr06	irgsp1_rep	three_prime_UTR	28102839	28102904	.	-	.	Parent=Os06t0676801-00
Chr06	irgsp1_rep	mRNA	28108706	28109191	.	-	.	ID=Os06t0676900-01;Name=Os06t0676900-01;Locus_id=Os06g0676900;Note=Non-protein coding transcript.;Transcript_evidence=AK111124 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-176-C05;TENOR=Os06t0676900-01
Chr06	irgsp1_rep	exon	28108706	28109191	.	-	.	Parent=Os06t0676900-01
Chr06	irgsp1_rep	mRNA	28109236	28110979	.	-	.	ID=Os06t0677000-01;Name=Os06t0677000-01;Locus_id=Os06g0677000;RAP-DB Gene Symbol Synonym(s)=DEP3%2C OspPLAIII&delta%3B;RAP-DB Gene Name Synonym(s)=dense and erect panicle 3%2C Patatin-related phospholipase A III delta;CGSNL Gene Symbol=DEP3;CGSNL Gene Name=DENSE AND ERECT PANICLE 3;Oryzabase Gene Symbol Synonym(s)=dep3%2C OspPLAIIIdelta%2C pPLAIIIdelta;Oryzabase Gene Name Synonym(s)=dense and erect panicle 3%2C Patatin-related phospholipase A III delta;Note=Patatin-related phospholipase A%2C Regulation of panicle length%2C grain shape and grain number per panicle;Transcript_evidence=Inferred from literature;ORF_evidence=A2YG60 (indica);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: metabolic process (GO:0008152);InterPro=Acyl transferase/acyl hydrolase/lysophospholipase (IPR016035),Patatin-like phospholipase domain (IPR002641);Manual Curation=September 7%2C 2017;Literature_PMID=26290597,21318372;Oryzabase=9078;TENOR=Os06t0677000-00;KEGG=Os06t0677000-00
Chr06	irgsp1_rep	five_prime_UTR	28110868	28110979	.	-	.	Parent=Os06t0677000-01
Chr06	irgsp1_rep	CDS	28109998	28110867	.	-	0	Parent=Os06t0677000-01
Chr06	irgsp1_rep	CDS	28109842	28109904	.	-	0	Parent=Os06t0677000-01
Chr06	irgsp1_rep	CDS	28109236	28109517	.	-	0	Parent=Os06t0677000-01
Chr06	irgsp1_rep	mRNA	28133801	28138094	.	+	.	ID=Os06t0677300-01;Name=Os06t0677300-01;Locus_id=Os06g0677300;Oryzabase Gene Symbol Synonym(s)=OsRFPV-5;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPV-5%2C RING-V protein 5;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK100432 (DDBJ%2C Best hit);ORF_evidence=B9FQH3 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-CH-type (IPR011016),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J023088I08;Oryzabase=11804;Expression=AK100432;TENOR=Os06t0677300-01;KEGG=Os06t0677300-01
Chr06	irgsp1_rep	five_prime_UTR	28133801	28133943	.	+	.	Parent=Os06t0677300-01
Chr06	irgsp1_rep	CDS	28133944	28133991	.	+	0	Parent=Os06t0677300-01
Chr06	irgsp1_rep	CDS	28135013	28135465	.	+	0	Parent=Os06t0677300-01
Chr06	irgsp1_rep	CDS	28135640	28135814	.	+	0	Parent=Os06t0677300-01
Chr06	irgsp1_rep	CDS	28135910	28136204	.	+	2	Parent=Os06t0677300-01
Chr06	irgsp1_rep	CDS	28136367	28136439	.	+	1	Parent=Os06t0677300-01
Chr06	irgsp1_rep	CDS	28136543	28136633	.	+	0	Parent=Os06t0677300-01
Chr06	irgsp1_rep	CDS	28136994	28137073	.	+	2	Parent=Os06t0677300-01
Chr06	irgsp1_rep	CDS	28137167	28137403	.	+	0	Parent=Os06t0677300-01
Chr06	irgsp1_rep	three_prime_UTR	28137404	28137411	.	+	.	Parent=Os06t0677300-01
Chr06	irgsp1_rep	three_prime_UTR	28137535	28138094	.	+	.	Parent=Os06t0677300-01
Chr06	irgsp1_rep	mRNA	28139204	28142262	.	+	.	ID=Os06t0677400-01;Name=Os06t0677400-01;Locus_id=Os06g0677400;Note=3-hydroxyisobutyrate dehydrogenase domain containing protein.;Transcript_evidence=AK064044 (DDBJ%2C Best hit);ORF_evidence=B6SHU3 (UniProt);GO=Biological Process: pentose-phosphate shunt (GO:0006098),Biological Process: valine metabolic process (GO:0006573),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity (GO:0004616),Molecular Function: 3-hydroxyisobutyrate dehydrogenase activity (GO:0008442),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: coenzyme binding (GO:0050662),Molecular Function: NAD binding (GO:0051287);InterPro=3-hydroxyisobutyrate dehydrogenase-related%2C conserved site (IPR002204),6-phosphogluconate dehydrogenase%2C NADP-binding (IPR006115),6-phosphogluconate dehydrogenase%2C C-terminal-like (IPR008927),3-hydroxyisobutyrate dehydrogenase (IPR011548),Dehydrogenase%2C multihelical (IPR013328),3-hydroxyacid dehydrogenase/reductase (IPR015815),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-125-D05;Expression=AK064044;TENOR=Os06t0677400-01;KEGG=Os06t0677400-01 (EC:1.1.1.31)
Chr06	irgsp1_rep	five_prime_UTR	28139204	28139265	.	+	.	Parent=Os06t0677400-01
Chr06	irgsp1_rep	five_prime_UTR	28139544	28139605	.	+	.	Parent=Os06t0677400-01
Chr06	irgsp1_rep	CDS	28139606	28139704	.	+	0	Parent=Os06t0677400-01
Chr06	irgsp1_rep	CDS	28139902	28139990	.	+	0	Parent=Os06t0677400-01
Chr06	irgsp1_rep	CDS	28140158	28140272	.	+	1	Parent=Os06t0677400-01
Chr06	irgsp1_rep	CDS	28140536	28140686	.	+	0	Parent=Os06t0677400-01
Chr06	irgsp1_rep	CDS	28140872	28140954	.	+	2	Parent=Os06t0677400-01
Chr06	irgsp1_rep	CDS	28141077	28141172	.	+	0	Parent=Os06t0677400-01
Chr06	irgsp1_rep	CDS	28141268	28141410	.	+	0	Parent=Os06t0677400-01
Chr06	irgsp1_rep	CDS	28141511	28141595	.	+	1	Parent=Os06t0677400-01
Chr06	irgsp1_rep	CDS	28141811	28141890	.	+	0	Parent=Os06t0677400-01
Chr06	irgsp1_rep	CDS	28141988	28142075	.	+	1	Parent=Os06t0677400-01
Chr06	irgsp1_rep	three_prime_UTR	28142076	28142262	.	+	.	Parent=Os06t0677400-01
Chr06	irgsp1_rep	mRNA	28139204	28142549	.	+	.	ID=Os06t0677400-02;Name=Os06t0677400-02;Locus_id=Os06g0677400;Note=Similar to 3-hydroxyisobutyrate dehydrogenase.;Transcript_evidence=AK073050 (DDBJ%2C Best hit);ORF_evidence=B6SHU3 (UniProt);GO=Biological Process: pentose-phosphate shunt (GO:0006098),Biological Process: valine metabolic process (GO:0006573),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity (GO:0004616),Molecular Function: 3-hydroxyisobutyrate dehydrogenase activity (GO:0008442),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=3-hydroxyisobutyrate dehydrogenase-related%2C conserved site (IPR002204),6-phosphogluconate dehydrogenase%2C NADP-binding (IPR006115),3-hydroxyacid dehydrogenase/reductase (IPR015815),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033004O06;TENOR=Os06t0677400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	28139204	28139265	.	+	.	Parent=Os06t0677400-02
Chr06	irgsp1_rep	five_prime_UTR	28139544	28139605	.	+	.	Parent=Os06t0677400-02
Chr06	irgsp1_rep	CDS	28139606	28139704	.	+	0	Parent=Os06t0677400-02
Chr06	irgsp1_rep	CDS	28139902	28139990	.	+	0	Parent=Os06t0677400-02
Chr06	irgsp1_rep	CDS	28140158	28140272	.	+	1	Parent=Os06t0677400-02
Chr06	irgsp1_rep	CDS	28140536	28140686	.	+	0	Parent=Os06t0677400-02
Chr06	irgsp1_rep	CDS	28140872	28141080	.	+	2	Parent=Os06t0677400-02
Chr06	irgsp1_rep	three_prime_UTR	28141081	28141172	.	+	.	Parent=Os06t0677400-02
Chr06	irgsp1_rep	three_prime_UTR	28141268	28141410	.	+	.	Parent=Os06t0677400-02
Chr06	irgsp1_rep	three_prime_UTR	28141511	28141595	.	+	.	Parent=Os06t0677400-02
Chr06	irgsp1_rep	three_prime_UTR	28141811	28141890	.	+	.	Parent=Os06t0677400-02
Chr06	irgsp1_rep	three_prime_UTR	28141988	28142549	.	+	.	Parent=Os06t0677400-02
Chr06	irgsp1_rep	mRNA	28143963	28148372	.	+	.	ID=Os06t0677500-01;Name=Os06t0677500-01;Locus_id=Os06g0677500;Note=Protein prenyltransferase domain containing protein.;Transcript_evidence=AK102430 (DDBJ%2C Best hit);ORF_evidence=NP_001151503.1 (RefSeq);GO=Biological Process: protein prenylation (GO:0018342),Molecular Function: protein binding (GO:0005515),Molecular Function: protein prenyltransferase activity (GO:0008318);InterPro=Leucine-rich repeat (IPR001611),Protein prenyltransferase%2C alpha subunit (IPR002088),Protein prenyltransferase (IPR008940);NIAS_FLcDNA=J033093H13;Expression=AK102430;TENOR=Os06t0677500-01;KEGG=Os06t0677500-01
Chr06	irgsp1_rep	five_prime_UTR	28143963	28144064	.	+	.	Parent=Os06t0677500-01
Chr06	irgsp1_rep	CDS	28144065	28144180	.	+	0	Parent=Os06t0677500-01
Chr06	irgsp1_rep	CDS	28144504	28144663	.	+	1	Parent=Os06t0677500-01
Chr06	irgsp1_rep	CDS	28144936	28145102	.	+	0	Parent=Os06t0677500-01
Chr06	irgsp1_rep	CDS	28145178	28145282	.	+	1	Parent=Os06t0677500-01
Chr06	irgsp1_rep	CDS	28145750	28146517	.	+	1	Parent=Os06t0677500-01
Chr06	irgsp1_rep	CDS	28146595	28146784	.	+	1	Parent=Os06t0677500-01
Chr06	irgsp1_rep	CDS	28147416	28147593	.	+	0	Parent=Os06t0677500-01
Chr06	irgsp1_rep	CDS	28147759	28148150	.	+	2	Parent=Os06t0677500-01
Chr06	irgsp1_rep	three_prime_UTR	28148151	28148372	.	+	.	Parent=Os06t0677500-01
Chr06	irgsp1_rep	mRNA	28148993	28149789	.	-	.	ID=Os06t0677600-01;Name=Os06t0677600-01;Locus_id=Os06g0677600;Oryzabase Gene Name Synonym(s)=Sm gene%2C Sm family protein;Note=Like-Sm ribonucleoprotein%2C core family protein.;Transcript_evidence=AK063252 (DDBJ%2C Best hit);ORF_evidence=NP_001147152.1 (RefSeq);InterPro=Like-Sm ribonucleoprotein (LSM) domain (IPR001163),Like-Sm ribonucleoprotein (LSM)-related domain (IPR010920);NIAS_FLcDNA=001-112-H05;Oryzabase=15651;Expression=AK063252;TENOR=Os06t0677600-01;KEGG=Os06t0677600-01
Chr06	irgsp1_rep	five_prime_UTR	28149713	28149789	.	-	.	Parent=Os06t0677600-01
Chr06	irgsp1_rep	five_prime_UTR	28149617	28149630	.	-	.	Parent=Os06t0677600-01
Chr06	irgsp1_rep	CDS	28149266	28149616	.	-	0	Parent=Os06t0677600-01
Chr06	irgsp1_rep	three_prime_UTR	28148993	28149265	.	-	.	Parent=Os06t0677600-01
Chr06	irgsp1_rep	mRNA	28151297	28156417	.	+	.	ID=Os06t0677700-00;Name=Os06t0677700-00;Locus_id=Os06g0677700;CGSNL Gene Symbol=C3H45;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45;Oryzabase Gene Symbol Synonym(s)=OsC3H45;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 45;Note=YT521-B-like protein family protein.;Transcript_evidence=tplb0017e12 (Wheat FLcDNA);ORF_evidence=NP_174334.2 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571),YTH domain (IPR007275);Oryzabase=8611;TENOR=Os06t0677700-00;KEGG=Os06t0677700-00
Chr06	irgsp1_rep	CDS	28151297	28151718	.	+	0	Parent=Os06t0677700-00
Chr06	irgsp1_rep	CDS	28152265	28152687	.	+	1	Parent=Os06t0677700-00
Chr06	irgsp1_rep	CDS	28153666	28153828	.	+	1	Parent=Os06t0677700-00
Chr06	irgsp1_rep	CDS	28153924	28154034	.	+	0	Parent=Os06t0677700-00
Chr06	irgsp1_rep	CDS	28154548	28154616	.	+	0	Parent=Os06t0677700-00
Chr06	irgsp1_rep	CDS	28154770	28154856	.	+	0	Parent=Os06t0677700-00
Chr06	irgsp1_rep	CDS	28155620	28156405	.	+	0	Parent=Os06t0677700-00
Chr06	irgsp1_rep	three_prime_UTR	28156406	28156417	.	+	.	Parent=Os06t0677700-00
Chr06	irgsp1_rep	mRNA	28158519	28164557	.	-	.	ID=Os06t0677800-01;Name=Os06t0677800-01;Locus_id=Os06g0677800;RAP-DB Gene Symbol Synonym(s)=OsARF17;RAP-DB Gene Name Synonym(s)=auxin response factor 17;CGSNL Gene Symbol=ARF17;CGSNL Gene Name=AUXIN RESPONSE FACTOR 17;Oryzabase Gene Symbol Synonym(s)=OsARF17;Oryzabase Gene Name Synonym(s)=auxin response factor-17%2C auxin response factor 17;Note=ARF transcription factor%2C Defense against different types of plant viruses;Transcript_evidence=AK103280;ORF_evidence=Q653U3;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Biological Process: response to hormone (GO:0009725),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515),Cellular Component: nucleus (GO:0005634);InterPro=DNA-binding pseudobarrel domain superfamily (IPR015300),B3 DNA binding domain (IPR003340),Auxin response factor (IPR010525),AUX/IAA domain (IPR033389),PB1 domain (IPR000270);NIAS_FLcDNA=J033124L19;Manual Curation=April 9%2C 2020;Literature_PMID=32253321;Oryzabase=10013;Expression=AK103280;TENOR=Os06t0677800-01;KEGG=Os06t0677800-01;Subcellular location=nucleus (GO:0005634)
Chr06	irgsp1_rep	five_prime_UTR	28163856	28164557	.	-	.	Parent=Os06t0677800-01
Chr06	irgsp1_rep	CDS	28163798	28163855	.	-	0	Parent=Os06t0677800-01
Chr06	irgsp1_rep	CDS	28163034	28163152	.	-	2	Parent=Os06t0677800-01
Chr06	irgsp1_rep	CDS	28162791	28162889	.	-	0	Parent=Os06t0677800-01
Chr06	irgsp1_rep	CDS	28162645	28162701	.	-	0	Parent=Os06t0677800-01
Chr06	irgsp1_rep	CDS	28162398	28162553	.	-	0	Parent=Os06t0677800-01
Chr06	irgsp1_rep	CDS	28162233	28162317	.	-	0	Parent=Os06t0677800-01
Chr06	irgsp1_rep	CDS	28161822	28161912	.	-	2	Parent=Os06t0677800-01
Chr06	irgsp1_rep	CDS	28161539	28161703	.	-	1	Parent=Os06t0677800-01
Chr06	irgsp1_rep	CDS	28161349	28161471	.	-	1	Parent=Os06t0677800-01
Chr06	irgsp1_rep	CDS	28161187	28161262	.	-	1	Parent=Os06t0677800-01
Chr06	irgsp1_rep	CDS	28160859	28161006	.	-	0	Parent=Os06t0677800-01
Chr06	irgsp1_rep	CDS	28159560	28160752	.	-	2	Parent=Os06t0677800-01
Chr06	irgsp1_rep	CDS	28159067	28159257	.	-	0	Parent=Os06t0677800-01
Chr06	irgsp1_rep	CDS	28158794	28158986	.	-	1	Parent=Os06t0677800-01
Chr06	irgsp1_rep	three_prime_UTR	28158519	28158793	.	-	.	Parent=Os06t0677800-01
Chr06	irgsp1_rep	mRNA	28189634	28190855	.	+	.	ID=Os06t0678100-00;Name=Os06t0678100-00;Locus_id=Os06g0678100;Note=Conserved hypothetical protein.;Transcript_evidence=EU975100 (DDBJ);ORF_evidence=NP_001058361.1 (RefSeq);TENOR=Os06t0678100-00;KEGG=Os06t0678100-00
Chr06	irgsp1_rep	five_prime_UTR	28189634	28189634	.	+	.	Parent=Os06t0678100-00
Chr06	irgsp1_rep	CDS	28189635	28190128	.	+	0	Parent=Os06t0678100-00
Chr06	irgsp1_rep	CDS	28190270	28190855	.	+	1	Parent=Os06t0678100-00
Chr06	irgsp1_rep	mRNA	28190959	28196204	.	-	.	ID=Os06t0678200-01;Name=Os06t0678200-01;Locus_id=Os06g0678200;RAP-DB Gene Symbol Synonym(s)=OsSPS1;RAP-DB Gene Name Synonym(s)=solanesyl diphosphate synthase 1;Oryzabase Gene Symbol Synonym(s)=OsSPS1%2C SPS1;Oryzabase Gene Name Synonym(s)=solanesyl diphosphate synthase 1;Note=Solanesyl diphosphate synthase%2C Supply of solanesyl diphosphate for ubiquinone-9 (UQ-9) biosynthesis in mitochondria;Transcript_evidence=AK071299,AK059456;ORF_evidence=Q653T6;GO=Biological Process: isoprenoid biosynthetic process (GO:0008299);InterPro=Isoprenoid synthase domain superfamily (IPR008949),Polyprenyl synthetase (IPR000092),Polyprenyl synthetase%2C conserved site (IPR033749);NIAS_FLcDNA=J023088H10,001-028-C04;Manual Curation=October 5%2C 2020;Literature_PMID=20421194;Oryzabase=11196;Expression=AK071299;TENOR=Os06t0678200-01;KEGG=Os06t0678200-01;Subcellular location=mitochondrion (GO:0005739)
Chr06	irgsp1_rep	five_prime_UTR	28196119	28196204	.	-	.	Parent=Os06t0678200-01
Chr06	irgsp1_rep	CDS	28195951	28196118	.	-	0	Parent=Os06t0678200-01
Chr06	irgsp1_rep	CDS	28195524	28195616	.	-	0	Parent=Os06t0678200-01
Chr06	irgsp1_rep	CDS	28194610	28194690	.	-	0	Parent=Os06t0678200-01
Chr06	irgsp1_rep	CDS	28194371	28194442	.	-	0	Parent=Os06t0678200-01
Chr06	irgsp1_rep	CDS	28194138	28194269	.	-	0	Parent=Os06t0678200-01
Chr06	irgsp1_rep	CDS	28193982	28194068	.	-	0	Parent=Os06t0678200-01
Chr06	irgsp1_rep	CDS	28193681	28193752	.	-	0	Parent=Os06t0678200-01
Chr06	irgsp1_rep	CDS	28193192	28193277	.	-	0	Parent=Os06t0678200-01
Chr06	irgsp1_rep	CDS	28192925	28193057	.	-	1	Parent=Os06t0678200-01
Chr06	irgsp1_rep	CDS	28192729	28192818	.	-	0	Parent=Os06t0678200-01
Chr06	irgsp1_rep	CDS	28192015	28192113	.	-	0	Parent=Os06t0678200-01
Chr06	irgsp1_rep	CDS	28191437	28191616	.	-	0	Parent=Os06t0678200-01
Chr06	irgsp1_rep	three_prime_UTR	28190959	28191436	.	-	.	Parent=Os06t0678200-01
Chr06	irgsp1_rep	mRNA	28203891	28204265	.	+	.	ID=Os06t0678500-00;Name=Os06t0678500-00;Locus_id=Os06g0678500;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001058363.2 (RefSeq);TENOR=Os06t0678500-00;KEGG=Os06t0678500-00
Chr06	irgsp1_rep	CDS	28203891	28204265	.	+	0	Parent=Os06t0678500-00
Chr06	irgsp1_rep	mRNA	28208632	28211553	.	-	.	ID=Os06t0678650-01;Name=Os06t0678650-01;Locus_id=Os06g0678650;Oryzabase Gene Symbol Synonym(s)=OsWD40-134;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK241346 (DDBJ%2C Best hit);ORF_evidence=NP_564728.2 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J065148C14;Oryzabase=10815;TENOR=Os06t0678650-01;KEGG=Os06t0678650-01
Chr06	irgsp1_rep	five_prime_UTR	28211553	28211553	.	-	.	Parent=Os06t0678650-01
Chr06	irgsp1_rep	CDS	28211453	28211552	.	-	0	Parent=Os06t0678650-01
Chr06	irgsp1_rep	CDS	28210037	28210692	.	-	2	Parent=Os06t0678650-01
Chr06	irgsp1_rep	three_prime_UTR	28209977	28210036	.	-	.	Parent=Os06t0678650-01
Chr06	irgsp1_rep	three_prime_UTR	28208632	28209091	.	-	.	Parent=Os06t0678650-01
Chr06	irgsp1_rep	mRNA	28212122	28214117	.	-	.	ID=Os06t0678651-00;Name=Os06t0678651-00;Locus_id=Os06g0678651;Note=Similar to WD-40 repeat family protein / beige-related.;Transcript_evidence=EU954809 (DDBJ);ORF_evidence=NP_564728.2 (RefSeq);InterPro=BEACH domain (IPR000409),PH-BEACH domain (IPR023362);TENOR=Os06t0678651-00;KEGG=Os06t0678651-00
Chr06	irgsp1_rep	CDS	28213597	28214117	.	-	0	Parent=Os06t0678651-00
Chr06	irgsp1_rep	CDS	28213459	28213505	.	-	1	Parent=Os06t0678651-00
Chr06	irgsp1_rep	CDS	28213264	28213357	.	-	2	Parent=Os06t0678651-00
Chr06	irgsp1_rep	CDS	28212925	28213102	.	-	1	Parent=Os06t0678651-00
Chr06	irgsp1_rep	three_prime_UTR	28212896	28212924	.	-	.	Parent=Os06t0678651-00
Chr06	irgsp1_rep	three_prime_UTR	28212122	28212355	.	-	.	Parent=Os06t0678651-00
Chr06	irgsp1_rep	mRNA	28226612	28234193	.	-	.	ID=Os06t0678700-01;Name=Os06t0678700-01;Locus_id=Os06g0678700;Note=Conserved hypothetical protein.;Transcript_evidence=AK109845 (DDBJ%2C Best hit);ORF_evidence=B9FQH6 (UniProt);NIAS_FLcDNA=002-148-E09;Expression=AK109845;TENOR=Os06t0678700-01;KEGG=Os06t0678700-01
Chr06	irgsp1_rep	five_prime_UTR	28233905	28234193	.	-	.	Parent=Os06t0678700-01
Chr06	irgsp1_rep	CDS	28233750	28233904	.	-	0	Parent=Os06t0678700-01
Chr06	irgsp1_rep	CDS	28232470	28232533	.	-	1	Parent=Os06t0678700-01
Chr06	irgsp1_rep	CDS	28231496	28231700	.	-	0	Parent=Os06t0678700-01
Chr06	irgsp1_rep	CDS	28231059	28231235	.	-	2	Parent=Os06t0678700-01
Chr06	irgsp1_rep	CDS	28230455	28230775	.	-	2	Parent=Os06t0678700-01
Chr06	irgsp1_rep	CDS	28229558	28229774	.	-	2	Parent=Os06t0678700-01
Chr06	irgsp1_rep	CDS	28228460	28228513	.	-	1	Parent=Os06t0678700-01
Chr06	irgsp1_rep	CDS	28226627	28227035	.	-	1	Parent=Os06t0678700-01
Chr06	irgsp1_rep	three_prime_UTR	28226612	28226626	.	-	.	Parent=Os06t0678700-01
Chr06	irgsp1_rep	mRNA	28227001	28228038	.	-	.	ID=Os06t0678700-02;Name=Os06t0678700-02;Locus_id=Os06g0678700;Note=Hypothetical gene.;Transcript_evidence=AK107560 (DDBJ%2C Best hit);ORF_evidence=Q655H6 (UniProt);NIAS_FLcDNA=002-130-B08;Expression=AK107560;TENOR=Os06t0678700-02;KEGG=Os06t0678700-02
Chr06	irgsp1_rep	five_prime_UTR	28227615	28228038	.	-	.	Parent=Os06t0678700-02
Chr06	irgsp1_rep	CDS	28227225	28227614	.	-	0	Parent=Os06t0678700-02
Chr06	irgsp1_rep	three_prime_UTR	28227001	28227224	.	-	.	Parent=Os06t0678700-02
Chr06	irgsp1_rep	mRNA	28224707	28227979	.	-	.	ID=Os06t0678700-03;Name=Os06t0678700-03;Locus_id=Os06g0678700;Note=Hypothetical conserved gene.;Transcript_evidence=AK101184 (DDBJ%2C Best hit);ORF_evidence=B9FQH6 (UniProt);NIAS_FLcDNA=J033029I12;TENOR=Os06t0678700-03
Chr06	irgsp1_rep	five_prime_UTR	28227047	28227979	.	-	.	Parent=Os06t0678700-03
Chr06	irgsp1_rep	CDS	28226631	28227046	.	-	0	Parent=Os06t0678700-03
Chr06	irgsp1_rep	CDS	28225289	28225607	.	-	1	Parent=Os06t0678700-03
Chr06	irgsp1_rep	CDS	28224707	28225187	.	-	0	Parent=Os06t0678700-03
Chr06	irgsp1_rep	mRNA	28231059	28233939	.	+	.	ID=Os06t0678750-00;Name=Os06t0678750-00;Locus_id=Os06g0678750;Note=Non-protein coding transcript.;Transcript_evidence=EU943604 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0678750-00
Chr06	irgsp1_rep	exon	28231059	28231224	.	+	.	Parent=Os06t0678750-00
Chr06	irgsp1_rep	exon	28231488	28231722	.	+	.	Parent=Os06t0678750-00
Chr06	irgsp1_rep	exon	28233729	28233939	.	+	.	Parent=Os06t0678750-00
Chr06	irgsp1_rep	mRNA	28234460	28238335	.	-	.	ID=Os06t0678800-01;Name=Os06t0678800-01;Locus_id=Os06g0678800;Note=Similar to Pollen-specific protein NTP303 precursor.;Transcript_evidence=AK071465 (DDBJ%2C Best hit);ORF_evidence=B6ST56 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: copper ion binding (GO:0005507),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Multicopper oxidase%2C type 1 (IPR001117),Cupredoxin (IPR008972),Multicopper oxidase%2C type 2 (IPR011706),Multicopper oxidase%2C type 3 (IPR011707);NIAS_FLcDNA=J023098E17;Expression=AK071465;TENOR=Os06t0678800-01;KEGG=Os06t0678800-01
Chr06	irgsp1_rep	five_prime_UTR	28238306	28238335	.	-	.	Parent=Os06t0678800-01
Chr06	irgsp1_rep	CDS	28238168	28238305	.	-	0	Parent=Os06t0678800-01
Chr06	irgsp1_rep	CDS	28237949	28238058	.	-	0	Parent=Os06t0678800-01
Chr06	irgsp1_rep	CDS	28236756	28237026	.	-	1	Parent=Os06t0678800-01
Chr06	irgsp1_rep	CDS	28236540	28236642	.	-	0	Parent=Os06t0678800-01
Chr06	irgsp1_rep	CDS	28236095	28236443	.	-	2	Parent=Os06t0678800-01
Chr06	irgsp1_rep	CDS	28235309	28235674	.	-	1	Parent=Os06t0678800-01
Chr06	irgsp1_rep	CDS	28235144	28235222	.	-	1	Parent=Os06t0678800-01
Chr06	irgsp1_rep	CDS	28234754	28234966	.	-	0	Parent=Os06t0678800-01
Chr06	irgsp1_rep	three_prime_UTR	28234460	28234753	.	-	.	Parent=Os06t0678800-01
Chr06	irgsp1_rep	mRNA	28234754	28238338	.	+	.	ID=Os06t0678875-00;Name=Os06t0678875-00;Locus_id=Os06g0678875;Note=Non-protein coding transcript.;Transcript_evidence=tplb0021n10 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os06t0678875-00
Chr06	irgsp1_rep	exon	28234754	28234984	.	+	.	Parent=Os06t0678875-00
Chr06	irgsp1_rep	exon	28235161	28235221	.	+	.	Parent=Os06t0678875-00
Chr06	irgsp1_rep	exon	28235308	28235683	.	+	.	Parent=Os06t0678875-00
Chr06	irgsp1_rep	exon	28236108	28236432	.	+	.	Parent=Os06t0678875-00
Chr06	irgsp1_rep	exon	28236530	28236621	.	+	.	Parent=Os06t0678875-00
Chr06	irgsp1_rep	exon	28236735	28237033	.	+	.	Parent=Os06t0678875-00
Chr06	irgsp1_rep	exon	28237955	28238051	.	+	.	Parent=Os06t0678875-00
Chr06	irgsp1_rep	exon	28238158	28238338	.	+	.	Parent=Os06t0678875-00
Chr06	irgsp1_rep	mRNA	28256745	28259996	.	+	.	ID=Os06t0679100-00;Name=Os06t0679100-00;Locus_id=Os06g0679100;Note=Similar to Anaphase-promoting complex subunit 8-like protein.;Transcript_evidence=BT055996 (DDBJ);ORF_evidence=Q949C2 (UniProt);TENOR=Os06t0679100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	28256745	28256918	.	+	.	Parent=Os06t0679100-00
Chr06	irgsp1_rep	CDS	28256919	28257042	.	+	0	Parent=Os06t0679100-00
Chr06	irgsp1_rep	CDS	28258349	28258726	.	+	2	Parent=Os06t0679100-00
Chr06	irgsp1_rep	CDS	28259633	28259667	.	+	2	Parent=Os06t0679100-00
Chr06	irgsp1_rep	three_prime_UTR	28259668	28259996	.	+	.	Parent=Os06t0679100-00
Chr06	irgsp1_rep	mRNA	28264502	28266420	.	+	.	ID=Os06t0679200-01;Name=Os06t0679200-01;Locus_id=Os06g0679200;Note=Non-protein coding transcript.;Transcript_evidence=AK107197 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-125-A10;TENOR=Os06t0679200-01
Chr06	irgsp1_rep	exon	28264502	28266420	.	+	.	Parent=Os06t0679200-01
Chr06	irgsp1_rep	mRNA	28270171	28272930	.	-	.	ID=Os06t0679400-01;Name=Os06t0679400-01;Locus_id=Os06g0679400;Note=Similar to Myb-related protein Pp2.;Transcript_evidence=AK111697 (DDBJ%2C Best hit);ORF_evidence=B8B1G3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: metabolic process (GO:0008152),Molecular Function: DNA binding (GO:0003677),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Phosphoglycerate/bisphosphoglycerate mutase%2C active site (IPR001345),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J023004F23;Expression=AK111697;TENOR=Os06t0679400-01;KEGG=Os06t0679400-01
Chr06	irgsp1_rep	five_prime_UTR	28272654	28272930	.	-	.	Parent=Os06t0679400-01
Chr06	irgsp1_rep	CDS	28272327	28272653	.	-	0	Parent=Os06t0679400-01
Chr06	irgsp1_rep	CDS	28271490	28272240	.	-	0	Parent=Os06t0679400-01
Chr06	irgsp1_rep	CDS	28270476	28270741	.	-	2	Parent=Os06t0679400-01
Chr06	irgsp1_rep	three_prime_UTR	28270171	28270475	.	-	.	Parent=Os06t0679400-01
Chr06	irgsp1_rep	mRNA	28275643	28279473	.	+	.	ID=Os06t0679500-01;Name=Os06t0679500-01;Locus_id=Os06g0679500;Note=Similar to Avr9 elicitor response-like protein.;Transcript_evidence=AK063283 (DDBJ%2C Best hit);ORF_evidence=NP_001149120.1 (RefSeq);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Glycosyl transferase%2C family 31 (IPR002659);NIAS_FLcDNA=001-113-D04;Expression=AK063283;TENOR=Os06t0679500-01;KEGG=Os06t0679500-01
Chr06	irgsp1_rep	five_prime_UTR	28275643	28275860	.	+	.	Parent=Os06t0679500-01
Chr06	irgsp1_rep	CDS	28275861	28275955	.	+	0	Parent=Os06t0679500-01
Chr06	irgsp1_rep	CDS	28276142	28276238	.	+	1	Parent=Os06t0679500-01
Chr06	irgsp1_rep	CDS	28276684	28276745	.	+	0	Parent=Os06t0679500-01
Chr06	irgsp1_rep	CDS	28276851	28277062	.	+	1	Parent=Os06t0679500-01
Chr06	irgsp1_rep	CDS	28277156	28277219	.	+	2	Parent=Os06t0679500-01
Chr06	irgsp1_rep	CDS	28277653	28277725	.	+	1	Parent=Os06t0679500-01
Chr06	irgsp1_rep	CDS	28277861	28277981	.	+	0	Parent=Os06t0679500-01
Chr06	irgsp1_rep	CDS	28278297	28278384	.	+	2	Parent=Os06t0679500-01
Chr06	irgsp1_rep	CDS	28278468	28278584	.	+	1	Parent=Os06t0679500-01
Chr06	irgsp1_rep	CDS	28278684	28278793	.	+	1	Parent=Os06t0679500-01
Chr06	irgsp1_rep	CDS	28278987	28279135	.	+	2	Parent=Os06t0679500-01
Chr06	irgsp1_rep	three_prime_UTR	28279136	28279473	.	+	.	Parent=Os06t0679500-01
Chr06	irgsp1_rep	mRNA	28275733	28276391	.	+	.	ID=Os06t0679500-02;Name=Os06t0679500-02;Locus_id=Os06g0679500;Note=Similar to Beta-1%2C3-galactosyltransferase sqv-2.;Transcript_evidence=AK108015 (DDBJ%2C Best hit);ORF_evidence=B6TZ56 (UniProt);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Glycosyl transferase%2C family 31 (IPR002659);NIAS_FLcDNA=002-135-H09;Expression=AK108015;TENOR=Os06t0679500-02;KEGG=Os06t0679500-02
Chr06	irgsp1_rep	five_prime_UTR	28275733	28275860	.	+	.	Parent=Os06t0679500-02
Chr06	irgsp1_rep	CDS	28275861	28275955	.	+	0	Parent=Os06t0679500-02
Chr06	irgsp1_rep	CDS	28276142	28276271	.	+	1	Parent=Os06t0679500-02
Chr06	irgsp1_rep	three_prime_UTR	28276272	28276391	.	+	.	Parent=Os06t0679500-02
Chr06	irgsp1_rep	mRNA	28280349	28280839	.	+	.	ID=Os06t0679600-00;Name=Os06t0679600-00;Locus_id=Os06g0679600;Note=Hypothetical conserved gene.;Transcript_evidence=BT034718 (DDBJ);ORF_evidence=Q655N6 (UniProt);TENOR=Os06t0679600-00;KEGG=Os06t0679600-00
Chr06	irgsp1_rep	CDS	28280349	28280831	.	+	0	Parent=Os06t0679600-00
Chr06	irgsp1_rep	three_prime_UTR	28280832	28280839	.	+	.	Parent=Os06t0679600-00
Chr06	irgsp1_rep	mRNA	28281923	28285338	.	-	.	ID=Os06t0679700-00;Name=Os06t0679700-00;Locus_id=Os06g0679700;Note=Hypothetical conserved gene.;Transcript_evidence=CT836283 (DDBJ%2C Best hit);ORF_evidence=B9FQI1 (UniProt);TENOR=Os06t0679700-00;KEGG=Os06t0679700-00
Chr06	irgsp1_rep	five_prime_UTR	28285082	28285338	.	-	.	Parent=Os06t0679700-00
Chr06	irgsp1_rep	CDS	28284976	28285081	.	-	0	Parent=Os06t0679700-00
Chr06	irgsp1_rep	CDS	28283763	28283890	.	-	2	Parent=Os06t0679700-00
Chr06	irgsp1_rep	CDS	28282955	28283124	.	-	0	Parent=Os06t0679700-00
Chr06	irgsp1_rep	CDS	28282743	28282857	.	-	1	Parent=Os06t0679700-00
Chr06	irgsp1_rep	CDS	28282124	28282141	.	-	0	Parent=Os06t0679700-00
Chr06	irgsp1_rep	three_prime_UTR	28281923	28282123	.	-	.	Parent=Os06t0679700-00
Chr06	irgsp1_rep	mRNA	28286664	28290489	.	-	.	ID=Os06t0679750-00;Name=Os06t0679750-00;Locus_id=Os06g0679750;Note=Hypothetical protein.;Transcript_evidence=tplb0021a19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0679750-00
Chr06	irgsp1_rep	five_prime_UTR	28290408	28290489	.	-	.	Parent=Os06t0679750-00
Chr06	irgsp1_rep	five_prime_UTR	28289982	28290340	.	-	.	Parent=Os06t0679750-00
Chr06	irgsp1_rep	five_prime_UTR	28289405	28289630	.	-	.	Parent=Os06t0679750-00
Chr06	irgsp1_rep	five_prime_UTR	28288021	28288163	.	-	.	Parent=Os06t0679750-00
Chr06	irgsp1_rep	five_prime_UTR	28287102	28287876	.	-	.	Parent=Os06t0679750-00
Chr06	irgsp1_rep	CDS	28286664	28287101	.	-	0	Parent=Os06t0679750-00
Chr06	irgsp1_rep	mRNA	28287331	28292986	.	+	.	ID=Os06t0679800-00;Name=Os06t0679800-00;Locus_id=Os06g0679800;Note=Heat shock protein Hsp70 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q655N4 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Heat shock protein Hsp70 (IPR001023),Heat shock protein 70 (IPR013126);TENOR=Os06t0679800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	28287331	28287849	.	+	0	Parent=Os06t0679800-00
Chr06	irgsp1_rep	CDS	28287983	28288195	.	+	0	Parent=Os06t0679800-00
Chr06	irgsp1_rep	CDS	28289428	28289520	.	+	0	Parent=Os06t0679800-00
Chr06	irgsp1_rep	CDS	28289593	28289661	.	+	0	Parent=Os06t0679800-00
Chr06	irgsp1_rep	CDS	28290065	28290265	.	+	0	Parent=Os06t0679800-00
Chr06	irgsp1_rep	CDS	28290341	28290487	.	+	0	Parent=Os06t0679800-00
Chr06	irgsp1_rep	CDS	28291177	28291305	.	+	0	Parent=Os06t0679800-00
Chr06	irgsp1_rep	CDS	28292654	28292784	.	+	0	Parent=Os06t0679800-00
Chr06	irgsp1_rep	CDS	28292893	28292986	.	+	1	Parent=Os06t0679800-00
Chr06	irgsp1_rep	mRNA	28293079	28293267	.	+	.	ID=Os06t0679850-00;Name=Os06t0679850-00;Locus_id=Os06g0679850;Note=Non-protein coding transcript.;Transcript_evidence=CT836331 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os06t0679850-00
Chr06	irgsp1_rep	exon	28293079	28293267	.	+	.	Parent=Os06t0679850-00
Chr06	irgsp1_rep	mRNA	28345366	28350758	.	+	.	ID=Os06t0680500-01;Name=Os06t0680500-01;Locus_id=Os06g0680500;Oryzabase Gene Symbol Synonym(s)=OsGLR3.5%2C GLR3.5%2C OsGLR3.3%2C GLR3.3;Oryzabase Gene Name Synonym(s)=Glutamate receptor homolog 3.5%2C GLUTAMATE RECEPTOR-LIKE 3.3;Note=Similar to Glutamate receptor 3.4 precursor (Ligand-gated ion channel 3.4) (AtGLR4). Splice isoform 2.;Transcript_evidence=AK099745 (DDBJ%2C Best hit);ORF_evidence=A3BEP2 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Cellular Component: outer membrane-bounded periplasmic space (GO:0030288),Molecular Function: ionotropic glutamate receptor activity (GO:0004970),Molecular Function: transporter activity (GO:0005215),Molecular Function: extracellular-glutamate-gated ion channel activity (GO:0005234);InterPro=Ionotropic glutamate receptor (IPR001320),Extracellular solute-binding protein%2C family 3 (IPR001638),Extracellular ligand-binding receptor (IPR001828),Ionotropic glutamate receptor%2C plant (IPR017103);NIAS_FLcDNA=J013091J21;Oryzabase=15502;Expression=AK099745;TENOR=Os06t0680500-01;KEGG=Os06t0680500-01
Chr06	irgsp1_rep	five_prime_UTR	28345366	28345631	.	+	.	Parent=Os06t0680500-01
Chr06	irgsp1_rep	CDS	28345632	28345655	.	+	0	Parent=Os06t0680500-01
Chr06	irgsp1_rep	CDS	28345817	28345916	.	+	0	Parent=Os06t0680500-01
Chr06	irgsp1_rep	CDS	28347388	28348733	.	+	2	Parent=Os06t0680500-01
Chr06	irgsp1_rep	CDS	28348811	28349088	.	+	0	Parent=Os06t0680500-01
Chr06	irgsp1_rep	CDS	28349359	28349390	.	+	1	Parent=Os06t0680500-01
Chr06	irgsp1_rep	CDS	28349483	28349889	.	+	2	Parent=Os06t0680500-01
Chr06	irgsp1_rep	CDS	28350026	28350511	.	+	0	Parent=Os06t0680500-01
Chr06	irgsp1_rep	three_prime_UTR	28350512	28350758	.	+	.	Parent=Os06t0680500-01
Chr06	irgsp1_rep	mRNA	28355127	28358357	.	+	.	ID=Os06t0680700-01;Name=Os06t0680700-01;Locus_id=Os06g0680700;Note=CytoChrome P450 family protein.;Transcript_evidence=AK064920 (DDBJ%2C Best hit);ORF_evidence=XP_002889880.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J013000N03;Expression=AK064920;TENOR=Os06t0680700-01;KEGG=Os06t0680700-01
Chr06	irgsp1_rep	five_prime_UTR	28355127	28355213	.	+	.	Parent=Os06t0680700-01
Chr06	irgsp1_rep	CDS	28355214	28356323	.	+	0	Parent=Os06t0680700-01
Chr06	irgsp1_rep	CDS	28357614	28358111	.	+	0	Parent=Os06t0680700-01
Chr06	irgsp1_rep	three_prime_UTR	28358112	28358357	.	+	.	Parent=Os06t0680700-01
Chr06	irgsp1_rep	mRNA	28355294	28358038	.	-	.	ID=Os06t0680800-00;Name=Os06t0680800-00;Locus_id=Os06g0680800;Note=Hypothetical protein.;Transcript_evidence=AK357549 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0680800-00
Chr06	irgsp1_rep	five_prime_UTR	28357608	28358038	.	-	.	Parent=Os06t0680800-00
Chr06	irgsp1_rep	CDS	28357565	28357607	.	-	0	Parent=Os06t0680800-00
Chr06	irgsp1_rep	CDS	28355294	28356313	.	-	2	Parent=Os06t0680800-00
Chr06	irgsp1_rep	mRNA	28368608	28371929	.	-	.	ID=Os06t0680900-01;Name=Os06t0680900-01;Locus_id=Os06g0680900;Note=Similar to predicted protein.;Transcript_evidence=AK121723 (DDBJ%2C Best hit);ORF_evidence=Q00UQ3 (UniProt);NIAS_FLcDNA=J033081L11;Expression=AK121723;TENOR=Os06t0680900-01;KEGG=Os06t0680900-01
Chr06	irgsp1_rep	five_prime_UTR	28371846	28371929	.	-	.	Parent=Os06t0680900-01
Chr06	irgsp1_rep	five_prime_UTR	28371713	28371737	.	-	.	Parent=Os06t0680900-01
Chr06	irgsp1_rep	CDS	28371599	28371712	.	-	0	Parent=Os06t0680900-01
Chr06	irgsp1_rep	CDS	28370068	28370147	.	-	0	Parent=Os06t0680900-01
Chr06	irgsp1_rep	CDS	28368887	28368959	.	-	1	Parent=Os06t0680900-01
Chr06	irgsp1_rep	three_prime_UTR	28368608	28368886	.	-	.	Parent=Os06t0680900-01
Chr06	irgsp1_rep	mRNA	28363631	28371929	.	-	.	ID=Os06t0680900-02;Name=Os06t0680900-02;Locus_id=Os06g0680900;Note=Exostosin-like family protein.;Transcript_evidence=AK121510 (DDBJ%2C Best hit);ORF_evidence=A2YG89 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);NIAS_FLcDNA=J033023L23;Expression=AK121510;TENOR=Os06t0680900-02;KEGG=Os06t0680900-02
Chr06	irgsp1_rep	five_prime_UTR	28371846	28371929	.	-	.	Parent=Os06t0680900-02
Chr06	irgsp1_rep	five_prime_UTR	28371599	28371733	.	-	.	Parent=Os06t0680900-02
Chr06	irgsp1_rep	five_prime_UTR	28370068	28370147	.	-	.	Parent=Os06t0680900-02
Chr06	irgsp1_rep	five_prime_UTR	28368157	28368959	.	-	.	Parent=Os06t0680900-02
Chr06	irgsp1_rep	five_prime_UTR	28367765	28367950	.	-	.	Parent=Os06t0680900-02
Chr06	irgsp1_rep	CDS	28367525	28367764	.	-	0	Parent=Os06t0680900-02
Chr06	irgsp1_rep	CDS	28367152	28367297	.	-	0	Parent=Os06t0680900-02
Chr06	irgsp1_rep	CDS	28365335	28365701	.	-	1	Parent=Os06t0680900-02
Chr06	irgsp1_rep	CDS	28363869	28364549	.	-	0	Parent=Os06t0680900-02
Chr06	irgsp1_rep	three_prime_UTR	28363631	28363868	.	-	.	Parent=Os06t0680900-02
Chr06	irgsp1_rep	mRNA	28377422	28378136	.	+	.	ID=Os06t0681000-01;Name=Os06t0681000-01;Locus_id=Os06g0681000;Note=Conserved hypothetical protein.;Transcript_evidence=AK062780 (DDBJ%2C Best hit);ORF_evidence=B9FQI5 (UniProt);NIAS_FLcDNA=001-107-B02;TENOR=Os06t0681000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	28377422	28377422	.	+	.	Parent=Os06t0681000-01
Chr06	irgsp1_rep	CDS	28377423	28377914	.	+	0	Parent=Os06t0681000-01
Chr06	irgsp1_rep	three_prime_UTR	28377915	28378136	.	+	.	Parent=Os06t0681000-01
Chr06	irgsp1_rep	mRNA	28383244	28385805	.	-	.	ID=Os06t0681100-00;Name=Os06t0681100-00;Locus_id=Os06g0681100;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q653Y1 (UniProt);InterPro=Domain of unknown function DUF629 (IPR006865);TENOR=Os06t0681100-00;KEGG=Os06t0681100-00
Chr06	irgsp1_rep	CDS	28384231	28385805	.	-	0	Parent=Os06t0681100-00
Chr06	irgsp1_rep	CDS	28383772	28383943	.	-	0	Parent=Os06t0681100-00
Chr06	irgsp1_rep	CDS	28383244	28383317	.	-	2	Parent=Os06t0681100-00
Chr06	irgsp1_rep	mRNA	28388375	28389574	.	-	.	ID=Os06t0681200-01;Name=Os06t0681200-01;Locus_id=Os06g0681200;CGSNL Gene Symbol=ENODL18;CGSNL Gene Name=EARLY NODULIN LIKE PROTEIN 18;Oryzabase Gene Symbol Synonym(s)=OsENODL18%2C OsELA3%2C ELA3;Oryzabase Gene Name Synonym(s)=early nodulin-like protein 18%2C early nodulin-like arabinogalactan protein 3%2C eNod-like AGP 3;Note=Cupredoxin domain containing protein.;Transcript_evidence=AK107980 (DDBJ%2C Best hit);ORF_evidence=Q4KXE1 (UniProt);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);NIAS_FLcDNA=002-135-E05;Oryzabase=9743;Expression=AK107980;TENOR=Os06t0681200-01;KEGG=Os06t0681200-01
Chr06	irgsp1_rep	five_prime_UTR	28389498	28389574	.	-	.	Parent=Os06t0681200-01
Chr06	irgsp1_rep	CDS	28389317	28389497	.	-	0	Parent=Os06t0681200-01
Chr06	irgsp1_rep	CDS	28388549	28389207	.	-	2	Parent=Os06t0681200-01
Chr06	irgsp1_rep	three_prime_UTR	28388375	28388548	.	-	.	Parent=Os06t0681200-01
Chr06	irgsp1_rep	mRNA	28394282	28396001	.	-	.	ID=Os06t0681300-01;Name=Os06t0681300-01;Locus_id=Os06g0681300;Note=Hypothetical conserved gene.;Transcript_evidence=AK058781 (DDBJ%2C Best hit);ORF_evidence=XP_002489292.1 (RefSeq);NIAS_FLcDNA=001-002-C10;Expression=AK058781;TENOR=Os06t0681300-01;KEGG=Os06t0681300-01
Chr06	irgsp1_rep	five_prime_UTR	28395617	28396001	.	-	.	Parent=Os06t0681300-01
Chr06	irgsp1_rep	five_prime_UTR	28395469	28395512	.	-	.	Parent=Os06t0681300-01
Chr06	irgsp1_rep	five_prime_UTR	28394683	28394809	.	-	.	Parent=Os06t0681300-01
Chr06	irgsp1_rep	CDS	28394437	28394682	.	-	0	Parent=Os06t0681300-01
Chr06	irgsp1_rep	three_prime_UTR	28394282	28394436	.	-	.	Parent=Os06t0681300-01
Chr06	irgsp1_rep	mRNA	28390431	28396001	.	-	.	ID=Os06t0681300-02;Name=Os06t0681300-02;Locus_id=Os06g0681300;Note=PAK-box/P21-Rho-binding domain containing protein.;Transcript_evidence=AK110977 (DDBJ%2C Best hit);ORF_evidence=B8B1G9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=PAK-box/P21-Rho-binding (IPR000095);NIAS_FLcDNA=002-174-C05;Expression=AK110977;TENOR=Os06t0681300-02;KEGG=Os06t0681300-02
Chr06	irgsp1_rep	five_prime_UTR	28395617	28396001	.	-	.	Parent=Os06t0681300-02
Chr06	irgsp1_rep	five_prime_UTR	28395469	28395512	.	-	.	Parent=Os06t0681300-02
Chr06	irgsp1_rep	five_prime_UTR	28394039	28394191	.	-	.	Parent=Os06t0681300-02
Chr06	irgsp1_rep	five_prime_UTR	28392220	28392237	.	-	.	Parent=Os06t0681300-02
Chr06	irgsp1_rep	CDS	28392162	28392219	.	-	0	Parent=Os06t0681300-02
Chr06	irgsp1_rep	CDS	28391920	28392017	.	-	2	Parent=Os06t0681300-02
Chr06	irgsp1_rep	CDS	28391722	28391809	.	-	0	Parent=Os06t0681300-02
Chr06	irgsp1_rep	CDS	28390635	28390867	.	-	2	Parent=Os06t0681300-02
Chr06	irgsp1_rep	three_prime_UTR	28390431	28390634	.	-	.	Parent=Os06t0681300-02
Chr06	irgsp1_rep	mRNA	28401740	28404496	.	+	.	ID=Os06t0681400-01;Name=Os06t0681400-01;Locus_id=Os06g0681400;Oryzabase Gene Symbol Synonym(s)=Ubi1;Oryzabase Gene Name Synonym(s)=Ubiquitin1%2C polyubiquitin;Note=Ubiquitin domain containing protein.;Transcript_evidence=AK121590 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin (IPR000626),Ubiquitin conserved site (IPR019954),Ubiquitin supergroup (IPR019955),Ubiquitin subgroup (IPR019956);NIAS_FLcDNA=J033037P03;Oryzabase=14758;TENOR=Os06t0681400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	28401740	28401808	.	+	0	Parent=Os06t0681400-01
Chr06	irgsp1_rep	CDS	28402585	28404186	.	+	0	Parent=Os06t0681400-01
Chr06	irgsp1_rep	three_prime_UTR	28404187	28404496	.	+	.	Parent=Os06t0681400-01
Chr06	irgsp1_rep	mRNA	28414034	28425443	.	+	.	ID=Os06t0681600-01;Name=Os06t0681600-01;Locus_id=Os06g0681600;Oryzabase Gene Symbol Synonym(s)=prx89;Oryzabase Gene Name Synonym(s)=class III peroxidase 89;Note=Haem peroxidase family protein.;Transcript_evidence=AK070917 (DDBJ%2C Best hit),AK061308 (DDBJ%2C Best hit),AK106002 (DDBJ%2C Best hit);ORF_evidence=Q5U1K4 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793);NIAS_FLcDNA=J023065P13,006-302-A05,001-206-A02;Oryzabase=14612;TENOR=Os06t0681600-01
Chr06	irgsp1_rep	five_prime_UTR	28414034	28414061	.	+	.	Parent=Os06t0681600-01
Chr06	irgsp1_rep	CDS	28414062	28414286	.	+	0	Parent=Os06t0681600-01
Chr06	irgsp1_rep	CDS	28414383	28414574	.	+	0	Parent=Os06t0681600-01
Chr06	irgsp1_rep	CDS	28414656	28414818	.	+	0	Parent=Os06t0681600-01
Chr06	irgsp1_rep	CDS	28424793	28425226	.	+	2	Parent=Os06t0681600-01
Chr06	irgsp1_rep	three_prime_UTR	28425227	28425443	.	+	.	Parent=Os06t0681600-01
Chr06	irgsp1_rep	mRNA	28414034	28417161	.	+	.	ID=Os06t0681600-02;Name=Os06t0681600-02;Locus_id=Os06g0681600;Oryzabase Gene Symbol Synonym(s)=prx89;Oryzabase Gene Name Synonym(s)=class III peroxidase 89;Note=Similar to peroxidase 39.;Transcript_evidence=AK071908 (DDBJ%2C Best hit);ORF_evidence=Q5U1K4 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255);NIAS_FLcDNA=J013060N22;Oryzabase=14612;Expression=AK071908;TENOR=Os06t0681600-02;KEGG=Os06t0681600-02 (EC:1.11.1.7)
Chr06	irgsp1_rep	five_prime_UTR	28414034	28414061	.	+	.	Parent=Os06t0681600-02
Chr06	irgsp1_rep	CDS	28414062	28414286	.	+	0	Parent=Os06t0681600-02
Chr06	irgsp1_rep	CDS	28414383	28414574	.	+	0	Parent=Os06t0681600-02
Chr06	irgsp1_rep	CDS	28414656	28414850	.	+	0	Parent=Os06t0681600-02
Chr06	irgsp1_rep	three_prime_UTR	28414851	28417161	.	+	.	Parent=Os06t0681600-02
Chr06	irgsp1_rep	mRNA	28426960	28430241	.	+	.	ID=Os06t0681700-01;Name=Os06t0681700-01;Locus_id=Os06g0681700;Note=Protein of unknown function DUF6%2C transmembrane domain containing protein.;Transcript_evidence=AK104993 (DDBJ%2C Best hit);ORF_evidence=NP_187364.1 (RefSeq);InterPro=Protein of unknown function DUF914%2C eukaryotic (IPR009262);NIAS_FLcDNA=001-002-G09;Expression=AK104993;TENOR=Os06t0681700-01;KEGG=Os06t0681700-01
Chr06	irgsp1_rep	five_prime_UTR	28426960	28427284	.	+	.	Parent=Os06t0681700-01
Chr06	irgsp1_rep	five_prime_UTR	28428315	28428319	.	+	.	Parent=Os06t0681700-01
Chr06	irgsp1_rep	CDS	28428320	28428892	.	+	0	Parent=Os06t0681700-01
Chr06	irgsp1_rep	CDS	28428983	28429403	.	+	0	Parent=Os06t0681700-01
Chr06	irgsp1_rep	CDS	28429593	28429951	.	+	2	Parent=Os06t0681700-01
Chr06	irgsp1_rep	three_prime_UTR	28429952	28430241	.	+	.	Parent=Os06t0681700-01
Chr06	irgsp1_rep	mRNA	28433693	28434445	.	+	.	ID=Os06t0681900-00;Name=Os06t0681900-00;Locus_id=Os06g0681900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=FP101382 (DDBJ);ORF_evidence=Q653X0 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);TENOR=Os06t0681900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	28433693	28433887	.	+	.	Parent=Os06t0681900-00
Chr06	irgsp1_rep	CDS	28433888	28434445	.	+	0	Parent=Os06t0681900-00
Chr06	irgsp1_rep	mRNA	28439493	28440216	.	+	.	ID=Os06t0682300-01;Name=Os06t0682300-01;Locus_id=Os06g0682300;Note=Conserved hypothetical protein.;Transcript_evidence=AK062934 (DDBJ%2C Best hit);ORF_evidence=Q5Z5R8 (UniProt);NIAS_FLcDNA=001-109-A12;Expression=AK062934;TENOR=Os06t0682300-01;KEGG=Os06t0682300-01
Chr06	irgsp1_rep	five_prime_UTR	28439493	28439820	.	+	.	Parent=Os06t0682300-01
Chr06	irgsp1_rep	CDS	28439821	28440102	.	+	0	Parent=Os06t0682300-01
Chr06	irgsp1_rep	three_prime_UTR	28440103	28440216	.	+	.	Parent=Os06t0682300-01
Chr06	irgsp1_rep	mRNA	28446534	28447986	.	+	.	ID=Os06t0682633-01;Name=Os06t0682633-01;Locus_id=Os06g0682633;Note=Hypothetical conserved gene.;Transcript_evidence=AK243284 (DDBJ%2C Best hit);ORF_evidence=B6TRF0 (UniProt);NIAS_FLcDNA=J100051M17;TENOR=Os06t0682633-01;KEGG=Os06t0682633-01
Chr06	irgsp1_rep	five_prime_UTR	28446534	28446681	.	+	.	Parent=Os06t0682633-01
Chr06	irgsp1_rep	CDS	28446682	28446792	.	+	0	Parent=Os06t0682633-01
Chr06	irgsp1_rep	three_prime_UTR	28446793	28447986	.	+	.	Parent=Os06t0682633-01
Chr06	irgsp1_rep	mRNA	28453037	28456729	.	+	.	ID=Os06t0682666-01;Name=Os06t0682666-01;Locus_id=Os06g0682666;Note=Hypothetical gene.;Transcript_evidence=AK287704 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065131P07;TENOR=Os06t0682666-01;KEGG=Os06t0682666-01
Chr06	irgsp1_rep	five_prime_UTR	28453037	28454046	.	+	.	Parent=Os06t0682666-01
Chr06	irgsp1_rep	five_prime_UTR	28454619	28454884	.	+	.	Parent=Os06t0682666-01
Chr06	irgsp1_rep	five_prime_UTR	28455676	28455938	.	+	.	Parent=Os06t0682666-01
Chr06	irgsp1_rep	CDS	28455939	28456640	.	+	0	Parent=Os06t0682666-01
Chr06	irgsp1_rep	three_prime_UTR	28456641	28456729	.	+	.	Parent=Os06t0682666-01
Chr06	irgsp1_rep	mRNA	28453267	28456743	.	-	.	ID=Os06t0682700-00;Name=Os06t0682700-00;Locus_id=Os06g0682700;Note=Similar to SWAP (Suppressor-of-White-APricot)/surp domain-containing protein.;Transcript_evidence=BT037369 (DDBJ);ORF_evidence=NP_194848.1 (RefSeq);GO=Biological Process: RNA processing (GO:0006396),Molecular Function: RNA binding (GO:0003723);InterPro=SWAP/Surp (IPR000061),RNA polymerase II%2C large subunit%2C CTD (IPR006569);TENOR=Os06t0682700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	28456380	28456743	.	-	0	Parent=Os06t0682700-00
Chr06	irgsp1_rep	CDS	28455676	28456249	.	-	2	Parent=Os06t0682700-00
Chr06	irgsp1_rep	CDS	28454619	28454884	.	-	1	Parent=Os06t0682700-00
Chr06	irgsp1_rep	CDS	28453316	28454046	.	-	2	Parent=Os06t0682700-00
Chr06	irgsp1_rep	three_prime_UTR	28453267	28453315	.	-	.	Parent=Os06t0682700-00
Chr06	irgsp1_rep	mRNA	28457970	28463484	.	-	.	ID=Os06t0682800-01;Name=Os06t0682800-01;Locus_id=Os06g0682800;Note=Zinc finger%2C CCCH-type domain containing protein.;Transcript_evidence=AK064816 (DDBJ%2C Best hit);ORF_evidence=B6TJR7 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=J013000E13;Expression=AK064816;TENOR=Os06t0682800-01;KEGG=Os06t0682800-01
Chr06	irgsp1_rep	five_prime_UTR	28463375	28463484	.	-	.	Parent=Os06t0682800-01
Chr06	irgsp1_rep	CDS	28463099	28463374	.	-	0	Parent=Os06t0682800-01
Chr06	irgsp1_rep	three_prime_UTR	28461493	28463098	.	-	.	Parent=Os06t0682800-01
Chr06	irgsp1_rep	three_prime_UTR	28461358	28461391	.	-	.	Parent=Os06t0682800-01
Chr06	irgsp1_rep	three_prime_UTR	28460605	28460731	.	-	.	Parent=Os06t0682800-01
Chr06	irgsp1_rep	three_prime_UTR	28460451	28460507	.	-	.	Parent=Os06t0682800-01
Chr06	irgsp1_rep	three_prime_UTR	28459843	28459940	.	-	.	Parent=Os06t0682800-01
Chr06	irgsp1_rep	three_prime_UTR	28459639	28459711	.	-	.	Parent=Os06t0682800-01
Chr06	irgsp1_rep	three_prime_UTR	28459329	28459527	.	-	.	Parent=Os06t0682800-01
Chr06	irgsp1_rep	three_prime_UTR	28458971	28459167	.	-	.	Parent=Os06t0682800-01
Chr06	irgsp1_rep	three_prime_UTR	28457970	28458415	.	-	.	Parent=Os06t0682800-01
Chr06	irgsp1_rep	mRNA	28458971	28463471	.	+	.	ID=Os06t0682850-00;Name=Os06t0682850-00;Locus_id=Os06g0682850;Note=Hypothetical protein.;Transcript_evidence=tplb0043p08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0682850-00
Chr06	irgsp1_rep	five_prime_UTR	28458971	28459138	.	+	.	Parent=Os06t0682850-00
Chr06	irgsp1_rep	five_prime_UTR	28459297	28459527	.	+	.	Parent=Os06t0682850-00
Chr06	irgsp1_rep	five_prime_UTR	28459639	28459726	.	+	.	Parent=Os06t0682850-00
Chr06	irgsp1_rep	five_prime_UTR	28459853	28459991	.	+	.	Parent=Os06t0682850-00
Chr06	irgsp1_rep	five_prime_UTR	28460595	28460740	.	+	.	Parent=Os06t0682850-00
Chr06	irgsp1_rep	five_prime_UTR	28461358	28461437	.	+	.	Parent=Os06t0682850-00
Chr06	irgsp1_rep	five_prime_UTR	28461815	28462306	.	+	.	Parent=Os06t0682850-00
Chr06	irgsp1_rep	CDS	28462307	28462364	.	+	0	Parent=Os06t0682850-00
Chr06	irgsp1_rep	CDS	28463157	28463471	.	+	2	Parent=Os06t0682850-00
Chr06	irgsp1_rep	mRNA	28463798	28466237	.	-	.	ID=Os06t0682900-01;Name=Os06t0682900-01;Locus_id=Os06g0682900;RAP-DB Gene Symbol Synonym(s)=HSA32%2C Hsa32%2C OsPPS1;RAP-DB Gene Name Synonym(s)=HEAT-STRESS-ASSOCIATED 32KD PROTEIN%2C heat-stress-associated 32-kD protein%2C rice ortholog of Hsa32%2C Hsa32 homolog%2C phosphosulfolactate synthase 1;CGSNL Gene Symbol=HSA32;CGSNL Gene Name=HEAT-STRESS-ASSOCIATED 32KD PROTEIN;Oryzabase Gene Symbol Synonym(s)=Hsa32%2C OsPPS1;Oryzabase Gene Name Synonym(s)=heat-stress-associated 32-kD protein%2C rice ortholog of Hsa32%2C Hsa32 homolog%2C phosphosulfolactate synthase 1;Note=Heat stress associated protein%2C Long-term acquired thermotolerance;Transcript_evidence=Inferred from literature;ORF_evidence=Q653W2;GO=Biological Process: coenzyme M biosynthetic process (GO:0019295),Molecular Function: catalytic activity (GO:0003824);InterPro=Peptidase S8%2C subtilisin-related (IPR015500),(2R)-phospho-3-sulpholactate synthase%2C ComA (IPR003830),Aldolase-type TIM barrel (IPR013785);Manual Curation=April 18%2C 2014;Literature_PMID=24520156;Oryzabase=7355;TENOR=Os06t0682900-01
Chr06	irgsp1_rep	five_prime_UTR	28466168	28466237	.	-	.	Parent=Os06t0682900-01
Chr06	irgsp1_rep	CDS	28466006	28466167	.	-	0	Parent=Os06t0682900-01
Chr06	irgsp1_rep	CDS	28465189	28465380	.	-	0	Parent=Os06t0682900-01
Chr06	irgsp1_rep	CDS	28464866	28465076	.	-	0	Parent=Os06t0682900-01
Chr06	irgsp1_rep	CDS	28464379	28464602	.	-	2	Parent=Os06t0682900-01
Chr06	irgsp1_rep	CDS	28464102	28464221	.	-	0	Parent=Os06t0682900-01
Chr06	irgsp1_rep	three_prime_UTR	28463798	28464101	.	-	.	Parent=Os06t0682900-01
Chr06	irgsp1_rep	mRNA	28467984	28471154	.	+	.	ID=Os06t0683000-01;Name=Os06t0683000-01;Locus_id=Os06g0683000;Note=Zinc finger%2C C2H2-like domain containing protein.;Transcript_evidence=AK120010 (DDBJ%2C Best hit);ORF_evidence=B8B1H7 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=002-186-A10;Expression=AK120010;TENOR=Os06t0683000-01;KEGG=Os06t0683000-01
Chr06	irgsp1_rep	five_prime_UTR	28467984	28468179	.	+	.	Parent=Os06t0683000-01
Chr06	irgsp1_rep	CDS	28468180	28468240	.	+	0	Parent=Os06t0683000-01
Chr06	irgsp1_rep	CDS	28468392	28469081	.	+	2	Parent=Os06t0683000-01
Chr06	irgsp1_rep	CDS	28469173	28469819	.	+	2	Parent=Os06t0683000-01
Chr06	irgsp1_rep	three_prime_UTR	28469820	28469892	.	+	.	Parent=Os06t0683000-01
Chr06	irgsp1_rep	three_prime_UTR	28470348	28470455	.	+	.	Parent=Os06t0683000-01
Chr06	irgsp1_rep	three_prime_UTR	28470633	28471154	.	+	.	Parent=Os06t0683000-01
Chr06	irgsp1_rep	mRNA	28468102	28470097	.	+	.	ID=Os06t0683000-02;Name=Os06t0683000-02;Locus_id=Os06g0683000;Note=Zinc finger%2C C2H2-like domain containing protein.;Transcript_evidence=AK105443 (DDBJ%2C Best hit);ORF_evidence=B8B1H7 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=001-125-A08;Expression=AK105443;TENOR=Os06t0683000-02;KEGG=Os06t0683000-02
Chr06	irgsp1_rep	five_prime_UTR	28468102	28468179	.	+	.	Parent=Os06t0683000-02
Chr06	irgsp1_rep	CDS	28468180	28468240	.	+	0	Parent=Os06t0683000-02
Chr06	irgsp1_rep	CDS	28468392	28469081	.	+	2	Parent=Os06t0683000-02
Chr06	irgsp1_rep	CDS	28469173	28469819	.	+	2	Parent=Os06t0683000-02
Chr06	irgsp1_rep	three_prime_UTR	28469820	28470097	.	+	.	Parent=Os06t0683000-02
Chr06	irgsp1_rep	mRNA	28468217	28470075	.	+	.	ID=Os06t0683000-03;Name=Os06t0683000-03;Locus_id=Os06g0683000;Note=Hypothetical conserved gene.;Transcript_evidence=AK121959 (DDBJ%2C Best hit);ORF_evidence=B8B1H7 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087);NIAS_FLcDNA=J033107N07;Expression=AK121959;TENOR=Os06t0683000-03;KEGG=Os06t0683000-03
Chr06	irgsp1_rep	five_prime_UTR	28468217	28468218	.	+	.	Parent=Os06t0683000-03
Chr06	irgsp1_rep	CDS	28468219	28468240	.	+	0	Parent=Os06t0683000-03
Chr06	irgsp1_rep	CDS	28468392	28469081	.	+	2	Parent=Os06t0683000-03
Chr06	irgsp1_rep	CDS	28469173	28469819	.	+	2	Parent=Os06t0683000-03
Chr06	irgsp1_rep	three_prime_UTR	28469820	28470075	.	+	.	Parent=Os06t0683000-03
Chr06	irgsp1_rep	mRNA	28470174	28472020	.	-	.	ID=Os06t0683100-01;Name=Os06t0683100-01;Locus_id=Os06g0683100;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK067955 (DDBJ%2C Best hit);ORF_evidence=NP_001150871.1 (RefSeq);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013126J18;Expression=AK067955;TENOR=Os06t0683100-01;KEGG=Os06t0683100-01
Chr06	irgsp1_rep	five_prime_UTR	28471995	28472020	.	-	.	Parent=Os06t0683100-01
Chr06	irgsp1_rep	CDS	28471841	28471994	.	-	0	Parent=Os06t0683100-01
Chr06	irgsp1_rep	CDS	28471560	28471742	.	-	2	Parent=Os06t0683100-01
Chr06	irgsp1_rep	CDS	28471211	28471437	.	-	2	Parent=Os06t0683100-01
Chr06	irgsp1_rep	CDS	28470949	28471109	.	-	0	Parent=Os06t0683100-01
Chr06	irgsp1_rep	CDS	28470622	28470835	.	-	1	Parent=Os06t0683100-01
Chr06	irgsp1_rep	CDS	28470318	28470482	.	-	0	Parent=Os06t0683100-01
Chr06	irgsp1_rep	three_prime_UTR	28470174	28470317	.	-	.	Parent=Os06t0683100-01
Chr06	irgsp1_rep	mRNA	28472626	28474779	.	-	.	ID=Os06t0683200-01;Name=Os06t0683200-01;Locus_id=Os06g0683200;Note=Similar to 50S ribosomal protein L24%2C chloroplast precursor (CL24).;Transcript_evidence=AK070432 (DDBJ%2C Best hit),AK060024 (DDBJ%2C Best hit);ORF_evidence=B4FTJ3 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L24 (IPR003256),KOW (IPR005824),Ribosomal protein L24/L26%2C conserved site (IPR005825),Translation protein SH3-like (IPR008991),Ribosomal protein L24%2C SH3-like (IPR014723);NIAS_FLcDNA=J023054E10,006-303-A09;Expression=AK070432;TENOR=Os06t0683200-01;KEGG=Os06t0683200-01
Chr06	irgsp1_rep	five_prime_UTR	28474700	28474779	.	-	.	Parent=Os06t0683200-01
Chr06	irgsp1_rep	CDS	28474577	28474699	.	-	0	Parent=Os06t0683200-01
Chr06	irgsp1_rep	CDS	28473429	28473467	.	-	0	Parent=Os06t0683200-01
Chr06	irgsp1_rep	CDS	28473126	28473353	.	-	0	Parent=Os06t0683200-01
Chr06	irgsp1_rep	CDS	28472830	28473012	.	-	0	Parent=Os06t0683200-01
Chr06	irgsp1_rep	three_prime_UTR	28472626	28472829	.	-	.	Parent=Os06t0683200-01
Chr06	irgsp1_rep	mRNA	28475574	28481088	.	+	.	ID=Os06t0683300-01;Name=Os06t0683300-01;Locus_id=Os06g0683300;CGSNL Gene Symbol=BGLU25;CGSNL Gene Name=BETA-GLUCOSIDASE 25;Oryzabase Gene Symbol Synonym(s)=Os6bglu25%2C Os6Bglu25;Oryzabase Gene Name Synonym(s)=beta-glucosidase 25;Note=Similar to Beta-glucosidase.;Transcript_evidence=AK068614 (DDBJ%2C Best hit),AK120488 (DDBJ%2C Best hit);ORF_evidence=Q0DA21 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 1%2C active site (IPR018120);NIAS_FLcDNA=J013157P14,J013116H18;Oryzabase=12098;Expression=AK068614;TENOR=Os06t0683300-01;KEGG=Os06t0683300-01
Chr06	irgsp1_rep	five_prime_UTR	28475574	28477107	.	+	.	Parent=Os06t0683300-01
Chr06	irgsp1_rep	CDS	28477108	28477148	.	+	0	Parent=Os06t0683300-01
Chr06	irgsp1_rep	CDS	28477270	28477351	.	+	1	Parent=Os06t0683300-01
Chr06	irgsp1_rep	CDS	28477438	28477504	.	+	0	Parent=Os06t0683300-01
Chr06	irgsp1_rep	CDS	28477592	28477650	.	+	2	Parent=Os06t0683300-01
Chr06	irgsp1_rep	CDS	28478344	28478419	.	+	0	Parent=Os06t0683300-01
Chr06	irgsp1_rep	CDS	28478501	28478572	.	+	2	Parent=Os06t0683300-01
Chr06	irgsp1_rep	CDS	28478676	28478763	.	+	2	Parent=Os06t0683300-01
Chr06	irgsp1_rep	CDS	28478883	28479138	.	+	1	Parent=Os06t0683300-01
Chr06	irgsp1_rep	CDS	28479236	28479351	.	+	0	Parent=Os06t0683300-01
Chr06	irgsp1_rep	CDS	28479444	28479499	.	+	1	Parent=Os06t0683300-01
Chr06	irgsp1_rep	CDS	28479597	28479628	.	+	2	Parent=Os06t0683300-01
Chr06	irgsp1_rep	three_prime_UTR	28479629	28479667	.	+	.	Parent=Os06t0683300-01
Chr06	irgsp1_rep	three_prime_UTR	28479749	28479780	.	+	.	Parent=Os06t0683300-01
Chr06	irgsp1_rep	three_prime_UTR	28479905	28480007	.	+	.	Parent=Os06t0683300-01
Chr06	irgsp1_rep	three_prime_UTR	28480099	28480207	.	+	.	Parent=Os06t0683300-01
Chr06	irgsp1_rep	three_prime_UTR	28480701	28481088	.	+	.	Parent=Os06t0683300-01
Chr06	irgsp1_rep	mRNA	28483812	28484488	.	+	.	ID=Os06t0683400-02;Name=Os06t0683400-02;Locus_id=Os06g0683400;RAP-DB Gene Symbol Synonym(s)=OsCCD1;CGSNL Gene Symbol=CCD1;CGSNL Gene Name=C-TERMINAL CENTRIN-LIKE DOMAIN 1;Oryzabase Gene Symbol Synonym(s)=OsCCD1;Oryzabase Gene Name Synonym(s)=C-terminal centrin-like domain 1;Note=Small calcium-binding protein with one EF-hand motif%2C Positive regulation of osmotic and salt tolerance;Transcript_evidence=AK111852,AK111897,AK112082;ORF_evidence=Q655G7;GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand domain pair (IPR011992),EF-hand domain (IPR002048),EF-Hand 1%2C calcium-binding site (IPR018247);NIAS_FLcDNA=J033005P22, J013028D20, 001-125-D12;Manual Curation=May 2%2C 2016;Literature_PMID=27095404;Oryzabase=21080;Expression=AK111852;TENOR=Os06t0683400-02;KEGG=Os06t0683400-02
Chr06	irgsp1_rep	five_prime_UTR	28483812	28483900	.	+	.	Parent=Os06t0683400-02
Chr06	irgsp1_rep	CDS	28483901	28484278	.	+	0	Parent=Os06t0683400-02
Chr06	irgsp1_rep	three_prime_UTR	28484279	28484488	.	+	.	Parent=Os06t0683400-02
Chr06	irgsp1_rep	mRNA	28488022	28488642	.	+	.	ID=Os06t0683500-00;Name=Os06t0683500-00;Locus_id=Os06g0683500;Note=Similar to predicted protein.;Transcript_evidence=BT064868 (DDBJ);ORF_evidence=NP_001174960.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: ribonuclease H activity (GO:0004523);InterPro=Ribonuclease H domain (IPR002156),Ribonuclease H-like (IPR012337);TENOR=Os06t0683500-00;KEGG=Os06t0683500-00
Chr06	irgsp1_rep	CDS	28488022	28488642	.	+	0	Parent=Os06t0683500-00
Chr06	irgsp1_rep	mRNA	28490039	28490684	.	-	.	ID=Os06t0683700-01;Name=Os06t0683700-01;Locus_id=Os06g0683700;Note=Similar to wound induced protein.;Transcript_evidence=AK103599 (DDBJ%2C Best hit);ORF_evidence=NP_001147203.1 (RefSeq);InterPro=Protein of unknown function wound-induced (IPR022251);NIAS_FLcDNA=J033133F14;Expression=AK103599;TENOR=Os06t0683700-01;KEGG=Os06t0683700-01
Chr06	irgsp1_rep	five_prime_UTR	28490569	28490684	.	-	.	Parent=Os06t0683700-01
Chr06	irgsp1_rep	CDS	28490257	28490568	.	-	0	Parent=Os06t0683700-01
Chr06	irgsp1_rep	three_prime_UTR	28490039	28490256	.	-	.	Parent=Os06t0683700-01
Chr06	irgsp1_rep	mRNA	28493187	28493877	.	+	.	ID=Os06t0683800-01;Name=Os06t0683800-01;Locus_id=Os06g0683800;Note=Conserved hypothetical protein.;Transcript_evidence=AK110639 (DDBJ%2C Best hit);ORF_evidence=A2YGB6 (UniProt);NIAS_FLcDNA=002-169-C08;Expression=AK110639;TENOR=Os06t0683800-01;KEGG=Os06t0683800-01
Chr06	irgsp1_rep	five_prime_UTR	28493187	28493287	.	+	.	Parent=Os06t0683800-01
Chr06	irgsp1_rep	CDS	28493288	28493572	.	+	0	Parent=Os06t0683800-01
Chr06	irgsp1_rep	three_prime_UTR	28493573	28493877	.	+	.	Parent=Os06t0683800-01
Chr06	irgsp1_rep	mRNA	28495278	28497221	.	+	.	ID=Os06t0683900-01;Name=Os06t0683900-01;Locus_id=Os06g0683900;Note=Similar to OSIGBa0115M15.5 protein.;Transcript_evidence=AK102096 (DDBJ%2C Best hit),AK063941 (DDBJ%2C Best hit);ORF_evidence=Q01KF4 (UniProt);NIAS_FLcDNA=J033083G08,001-123-E04;Expression=AK102096;TENOR=Os06t0683900-01;KEGG=Os06t0683900-01
Chr06	irgsp1_rep	five_prime_UTR	28495278	28495413	.	+	.	Parent=Os06t0683900-01
Chr06	irgsp1_rep	five_prime_UTR	28495541	28495575	.	+	.	Parent=Os06t0683900-01
Chr06	irgsp1_rep	CDS	28495576	28496871	.	+	0	Parent=Os06t0683900-01
Chr06	irgsp1_rep	three_prime_UTR	28496872	28497221	.	+	.	Parent=Os06t0683900-01
Chr06	irgsp1_rep	mRNA	28495505	28496831	.	-	.	ID=Os06t0683925-00;Name=Os06t0683925-00;Locus_id=Os06g0683925;Note=Hypothetical protein.;Transcript_evidence=tplb0033d10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0683925-00
Chr06	irgsp1_rep	five_prime_UTR	28496056	28496831	.	-	.	Parent=Os06t0683925-00
Chr06	irgsp1_rep	CDS	28495505	28496055	.	-	0	Parent=Os06t0683925-00
Chr06	irgsp1_rep	mRNA	28498538	28500582	.	-	.	ID=Os06t0683950-01;Name=Os06t0683950-01;Locus_id=Os06g0683950;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK240720 (DDBJ%2C Best hit);ORF_evidence=NP_001174962.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J043024O06;TENOR=Os06t0683950-01;KEGG=Os06t0683950-01
Chr06	irgsp1_rep	five_prime_UTR	28500529	28500582	.	-	.	Parent=Os06t0683950-01
Chr06	irgsp1_rep	CDS	28498729	28500528	.	-	0	Parent=Os06t0683950-01
Chr06	irgsp1_rep	three_prime_UTR	28498538	28498728	.	-	.	Parent=Os06t0683950-01
Chr06	irgsp1_rep	mRNA	28504392	28508822	.	-	.	ID=Os06t0684000-01;Name=Os06t0684000-01;Locus_id=Os06g0684000;Note=Similar to FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B Calcium-binding EF-hand.;Transcript_evidence=AK103572 (DDBJ%2C Best hit);ORF_evidence=Q2HTY1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Pyridine nucleotide-disulphide oxidoreductase%2C FAD/NAD(P)-binding domain (IPR023753);NIAS_FLcDNA=J033132N13;Expression=AK103572;TENOR=Os06t0684000-01;KEGG=Os06t0684000-01 (EC:1.6.99.3)
Chr06	irgsp1_rep	five_prime_UTR	28508568	28508822	.	-	.	Parent=Os06t0684000-01
Chr06	irgsp1_rep	CDS	28508461	28508567	.	-	0	Parent=Os06t0684000-01
Chr06	irgsp1_rep	CDS	28507790	28508108	.	-	1	Parent=Os06t0684000-01
Chr06	irgsp1_rep	three_prime_UTR	28507440	28507789	.	-	.	Parent=Os06t0684000-01
Chr06	irgsp1_rep	three_prime_UTR	28506759	28507009	.	-	.	Parent=Os06t0684000-01
Chr06	irgsp1_rep	three_prime_UTR	28506066	28506512	.	-	.	Parent=Os06t0684000-01
Chr06	irgsp1_rep	three_prime_UTR	28505481	28505753	.	-	.	Parent=Os06t0684000-01
Chr06	irgsp1_rep	three_prime_UTR	28505233	28505360	.	-	.	Parent=Os06t0684000-01
Chr06	irgsp1_rep	three_prime_UTR	28504392	28505025	.	-	.	Parent=Os06t0684000-01
Chr06	irgsp1_rep	mRNA	28504190	28508808	.	-	.	ID=Os06t0684000-02;Name=Os06t0684000-02;Locus_id=Os06g0684000;Note=Similar to External rotenone-insensitive NADPH dehydrogenase.;Transcript_evidence=AK102878 (DDBJ%2C Best hit);ORF_evidence=Q9ST62 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=EF-hand-like domain (IPR011992),FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR013027),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249),Pyridine nucleotide-disulphide oxidoreductase%2C FAD/NAD(P)-binding domain (IPR023753);NIAS_FLcDNA=J033112G02;Expression=AK102878;TENOR=Os06t0684000-02;KEGG=Os06t0684000-02 (EC:1.6.99.3)
Chr06	irgsp1_rep	five_prime_UTR	28508722	28508808	.	-	.	Parent=Os06t0684000-02
Chr06	irgsp1_rep	five_prime_UTR	28508568	28508588	.	-	.	Parent=Os06t0684000-02
Chr06	irgsp1_rep	CDS	28508461	28508567	.	-	0	Parent=Os06t0684000-02
Chr06	irgsp1_rep	CDS	28507838	28508108	.	-	1	Parent=Os06t0684000-02
Chr06	irgsp1_rep	CDS	28507440	28507646	.	-	0	Parent=Os06t0684000-02
Chr06	irgsp1_rep	CDS	28506759	28507009	.	-	0	Parent=Os06t0684000-02
Chr06	irgsp1_rep	CDS	28506296	28506512	.	-	1	Parent=Os06t0684000-02
Chr06	irgsp1_rep	CDS	28506066	28506170	.	-	0	Parent=Os06t0684000-02
Chr06	irgsp1_rep	CDS	28505481	28505753	.	-	0	Parent=Os06t0684000-02
Chr06	irgsp1_rep	CDS	28505233	28505360	.	-	0	Parent=Os06t0684000-02
Chr06	irgsp1_rep	CDS	28504906	28505025	.	-	1	Parent=Os06t0684000-02
Chr06	irgsp1_rep	CDS	28504598	28504685	.	-	1	Parent=Os06t0684000-02
Chr06	irgsp1_rep	three_prime_UTR	28504190	28504597	.	-	.	Parent=Os06t0684000-02
Chr06	irgsp1_rep	mRNA	28524559	28525825	.	+	.	ID=Os06t0684500-01;Name=Os06t0684500-01;Locus_id=Os06g0684500;Note=Conserved hypothetical protein.;Transcript_evidence=AK100859 (DDBJ%2C Best hit);ORF_evidence=NP_001176139.1 (RefSeq);NIAS_FLcDNA=J023123M11;Expression=AK100859;TENOR=Os06t0684500-01;KEGG=Os06t0684500-01
Chr06	irgsp1_rep	five_prime_UTR	28524559	28524626	.	+	.	Parent=Os06t0684500-01
Chr06	irgsp1_rep	CDS	28524627	28525493	.	+	0	Parent=Os06t0684500-01
Chr06	irgsp1_rep	three_prime_UTR	28525494	28525825	.	+	.	Parent=Os06t0684500-01
Chr06	irgsp1_rep	mRNA	28547607	28549831	.	-	.	ID=Os06t0684900-00;Name=Os06t0684900-00;Locus_id=Os06g0684900;Oryzabase Gene Symbol Synonym(s)=OsFbox322%2C Os_F0520;Oryzabase Gene Name Synonym(s)=F-box protein 322;Note=F-box domain%2C Skp2-like domain containing protein.;Transcript_evidence=FP100026 (DDBJ);ORF_evidence=A3BES4 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);Oryzabase=17099;TENOR=Os06t0684900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	28548800	28549831	.	-	0	Parent=Os06t0684900-00
Chr06	irgsp1_rep	CDS	28548314	28548322	.	-	0	Parent=Os06t0684900-00
Chr06	irgsp1_rep	three_prime_UTR	28548157	28548313	.	-	.	Parent=Os06t0684900-00
Chr06	irgsp1_rep	three_prime_UTR	28547607	28548003	.	-	.	Parent=Os06t0684900-00
Chr06	irgsp1_rep	mRNA	28551567	28553842	.	+	.	ID=Os06t0685100-00;Name=Os06t0685100-00;Locus_id=Os06g0685100;CGSNL Gene Symbol=BC1L5;CGSNL Gene Name=BRITTLE CULM-LIKE 5;Oryzabase Gene Symbol Synonym(s)=OsBC1L5%2C OsPCS11%2C PCS11;Oryzabase Gene Name Synonym(s)=BRITTLE CULM1-like 5%2C Phytochelatin synthase 11;Note=Similar to COBRA-like protein 10 precursor.;Transcript_evidence=AK334269 (DDBJ);ORF_evidence=NP_001105996.1 (RefSeq);InterPro=Glycosyl-phosphatidyl inositol-anchored%2C plant (IPR006918);Oryzabase=22986;TENOR=Os06t0685100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	28551567	28551659	.	+	.	Parent=Os06t0685100-00
Chr06	irgsp1_rep	CDS	28551660	28553711	.	+	0	Parent=Os06t0685100-00
Chr06	irgsp1_rep	three_prime_UTR	28553712	28553842	.	+	.	Parent=Os06t0685100-00
Chr06	irgsp1_rep	mRNA	28555639	28557909	.	-	.	ID=Os06t0685200-01;Name=Os06t0685200-01;Locus_id=Os06g0685200;Oryzabase Gene Symbol Synonym(s)=Os_F0663;Note=Hypothetical conserved gene.;Transcript_evidence=AK242414 (DDBJ%2C Best hit);ORF_evidence=Q655F1 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J080077F09;Oryzabase=17516;TENOR=Os06t0685200-01;KEGG=Os06t0685200-01
Chr06	irgsp1_rep	five_prime_UTR	28557848	28557909	.	-	.	Parent=Os06t0685200-01
Chr06	irgsp1_rep	CDS	28556615	28557847	.	-	0	Parent=Os06t0685200-01
Chr06	irgsp1_rep	CDS	28556344	28556502	.	-	0	Parent=Os06t0685200-01
Chr06	irgsp1_rep	CDS	28555883	28556200	.	-	0	Parent=Os06t0685200-01
Chr06	irgsp1_rep	three_prime_UTR	28555639	28555882	.	-	.	Parent=Os06t0685200-01
Chr06	irgsp1_rep	mRNA	28558347	28563878	.	-	.	ID=Os06t0685250-00;Name=Os06t0685250-00;Locus_id=Os06g0685250;Note=Hypothetical protein.;Transcript_evidence=tplb0043p22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0685250-00
Chr06	irgsp1_rep	five_prime_UTR	28563726	28563878	.	-	.	Parent=Os06t0685250-00
Chr06	irgsp1_rep	five_prime_UTR	28563461	28563570	.	-	.	Parent=Os06t0685250-00
Chr06	irgsp1_rep	five_prime_UTR	28562983	28563318	.	-	.	Parent=Os06t0685250-00
Chr06	irgsp1_rep	five_prime_UTR	28562554	28562843	.	-	.	Parent=Os06t0685250-00
Chr06	irgsp1_rep	five_prime_UTR	28562040	28562100	.	-	.	Parent=Os06t0685250-00
Chr06	irgsp1_rep	five_prime_UTR	28561759	28561848	.	-	.	Parent=Os06t0685250-00
Chr06	irgsp1_rep	five_prime_UTR	28561587	28561696	.	-	.	Parent=Os06t0685250-00
Chr06	irgsp1_rep	five_prime_UTR	28561412	28561516	.	-	.	Parent=Os06t0685250-00
Chr06	irgsp1_rep	five_prime_UTR	28561027	28561158	.	-	.	Parent=Os06t0685250-00
Chr06	irgsp1_rep	five_prime_UTR	28560031	28560162	.	-	.	Parent=Os06t0685250-00
Chr06	irgsp1_rep	five_prime_UTR	28558615	28558663	.	-	.	Parent=Os06t0685250-00
Chr06	irgsp1_rep	CDS	28558347	28558614	.	-	0	Parent=Os06t0685250-00
Chr06	irgsp1_rep	mRNA	28558359	28564077	.	+	.	ID=Os06t0685300-00;Name=Os06t0685300-00;Locus_id=Os06g0685300;CGSNL Gene Symbol=NTMC2T1.5;CGSNL Gene Name=N-TERMINAL-TM-C2 DOMAIN PROTEIN 1.5;Oryzabase Gene Symbol Synonym(s)=OsNTMC2T1.5;Oryzabase Gene Name Synonym(s)=N-terminal-TM-C2 domain protein 1.5%2C N-terminal trans- membrane and C2 domain protein 1.5%2C NTMC2 type 1.5 protein%2C NTMC2 family gene 1.5;Note=Similar to predicted protein.;Transcript_evidence=CT836241 (DDBJ%2C Best hit);ORF_evidence=XP_002437472.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),C2 membrane targeting protein (IPR018029),C2 region (IPR020477);Oryzabase=22123;TENOR=Os06t0685300-00;KEGG=Os06t0685300-00
Chr06	irgsp1_rep	five_prime_UTR	28558359	28558561	.	+	.	Parent=Os06t0685300-00
Chr06	irgsp1_rep	CDS	28558562	28558669	.	+	0	Parent=Os06t0685300-00
Chr06	irgsp1_rep	CDS	28560039	28560137	.	+	0	Parent=Os06t0685300-00
Chr06	irgsp1_rep	CDS	28560841	28560891	.	+	0	Parent=Os06t0685300-00
Chr06	irgsp1_rep	CDS	28561047	28561170	.	+	0	Parent=Os06t0685300-00
Chr06	irgsp1_rep	CDS	28561418	28561536	.	+	2	Parent=Os06t0685300-00
Chr06	irgsp1_rep	CDS	28561607	28561708	.	+	0	Parent=Os06t0685300-00
Chr06	irgsp1_rep	CDS	28561777	28561851	.	+	0	Parent=Os06t0685300-00
Chr06	irgsp1_rep	CDS	28562043	28562119	.	+	0	Parent=Os06t0685300-00
Chr06	irgsp1_rep	CDS	28562573	28562822	.	+	1	Parent=Os06t0685300-00
Chr06	irgsp1_rep	CDS	28562964	28563317	.	+	0	Parent=Os06t0685300-00
Chr06	irgsp1_rep	CDS	28563460	28563594	.	+	0	Parent=Os06t0685300-00
Chr06	irgsp1_rep	CDS	28563750	28563878	.	+	0	Parent=Os06t0685300-00
Chr06	irgsp1_rep	three_prime_UTR	28563879	28564077	.	+	.	Parent=Os06t0685300-00
Chr06	irgsp1_rep	mRNA	28566194	28566973	.	+	.	ID=Os06t0685400-01;Name=Os06t0685400-01;Locus_id=Os06g0685400;Note=Conserved hypothetical protein.;Transcript_evidence=AK100318 (DDBJ%2C Best hit);ORF_evidence=Q5N9U2 (UniProt);NIAS_FLcDNA=J023079B18;Expression=AK100318;TENOR=Os06t0685400-01;KEGG=Os06t0685400-01
Chr06	irgsp1_rep	five_prime_UTR	28566194	28566348	.	+	.	Parent=Os06t0685400-01
Chr06	irgsp1_rep	CDS	28566349	28566543	.	+	0	Parent=Os06t0685400-01
Chr06	irgsp1_rep	three_prime_UTR	28566544	28566554	.	+	.	Parent=Os06t0685400-01
Chr06	irgsp1_rep	three_prime_UTR	28566669	28566973	.	+	.	Parent=Os06t0685400-01
Chr06	irgsp1_rep	mRNA	28586492	28590205	.	+	.	ID=Os06t0685700-01;Name=Os06t0685700-01;Locus_id=Os06g0685700;CGSNL Gene Symbol=ARF10;CGSNL Gene Name=AUXIN RESPONSE FACTOR 10;Oryzabase Gene Symbol Synonym(s)=OsARF10%2C OsARF18%2C ARF18;Oryzabase Gene Name Synonym(s)=auxin response factor-10%2C auxin response factor 10%2C auxin response factor-18%2C auxin response factor 18;Note=Similar to Auxin response factor 16.;Transcript_evidence=AK100322 (DDBJ%2C Best hit);ORF_evidence=Q653H7 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: response to hormone stimulus (GO:0009725),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Transcriptional factor B3 (IPR003340),Auxin response factor (IPR010525),Aux/IAA-ARF-dimerisation (IPR011525),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=J023079H12;Oryzabase=10002;Expression=AK100322;TENOR=Os06t0685700-01;KEGG=Os06t0685700-01
Chr06	irgsp1_rep	five_prime_UTR	28586492	28587118	.	+	.	Parent=Os06t0685700-01
Chr06	irgsp1_rep	CDS	28587119	28588243	.	+	0	Parent=Os06t0685700-01
Chr06	irgsp1_rep	CDS	28588398	28589305	.	+	0	Parent=Os06t0685700-01
Chr06	irgsp1_rep	CDS	28589842	28589911	.	+	1	Parent=Os06t0685700-01
Chr06	irgsp1_rep	three_prime_UTR	28589912	28590205	.	+	.	Parent=Os06t0685700-01
Chr06	irgsp1_rep	mRNA	28597031	28615146	.	+	.	ID=Os06t0686050-00;Name=Os06t0686050-00;Locus_id=Os06g0686050;Note=Non-protein coding transcript.;Transcript_evidence=BT033172 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0686050-00
Chr06	irgsp1_rep	exon	28597031	28597094	.	+	.	Parent=Os06t0686050-00
Chr06	irgsp1_rep	exon	28600071	28600187	.	+	.	Parent=Os06t0686050-00
Chr06	irgsp1_rep	exon	28600253	28600341	.	+	.	Parent=Os06t0686050-00
Chr06	irgsp1_rep	exon	28613980	28614167	.	+	.	Parent=Os06t0686050-00
Chr06	irgsp1_rep	exon	28614998	28615146	.	+	.	Parent=Os06t0686050-00
Chr06	irgsp1_rep	mRNA	28617447	28618115	.	+	.	ID=Os06t0686400-01;Name=Os06t0686400-01;Locus_id=Os06g0686400;Oryzabase Gene Symbol Synonym(s)=OsLTPG13%2C OsLTPg13;Oryzabase Gene Name Synonym(s)=GPI-anchored non-specific lipid transfer protein 13%2C type G nsLTP 13%2C type G non-specific lipid transfer protein 13;Note=Bifunctional inhibitor/plant lipid transfer protein/seed storage domain containing protein.;Transcript_evidence=AK063215 (DDBJ%2C Best hit);ORF_evidence=B6UB28 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=001-112-D11;Oryzabase=13499;Expression=AK063215;TENOR=Os06t0686400-01;KEGG=Os06t0686400-01
Chr06	irgsp1_rep	five_prime_UTR	28617447	28617568	.	+	.	Parent=Os06t0686400-01
Chr06	irgsp1_rep	CDS	28617569	28617946	.	+	0	Parent=Os06t0686400-01
Chr06	irgsp1_rep	three_prime_UTR	28617947	28618115	.	+	.	Parent=Os06t0686400-01
Chr06	irgsp1_rep	mRNA	28617473	28620310	.	+	.	ID=Os06t0686400-02;Name=Os06t0686400-02;Locus_id=Os06g0686400;Oryzabase Gene Symbol Synonym(s)=OsLTPG13%2C OsLTPg13;Oryzabase Gene Name Synonym(s)=GPI-anchored non-specific lipid transfer protein 13%2C type G nsLTP 13%2C type G non-specific lipid transfer protein 13;Note=Bifunctional inhibitor/plant lipid transfer protein/seed storage domain containing protein.;Transcript_evidence=AK069702 (DDBJ%2C Best hit);ORF_evidence=B6UB28 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=J023026H03;Oryzabase=13499;Expression=AK069702;TENOR=Os06t0686400-02;KEGG=Os06t0686400-02
Chr06	irgsp1_rep	five_prime_UTR	28617473	28617568	.	+	.	Parent=Os06t0686400-02
Chr06	irgsp1_rep	CDS	28617569	28617946	.	+	0	Parent=Os06t0686400-02
Chr06	irgsp1_rep	three_prime_UTR	28617947	28618958	.	+	.	Parent=Os06t0686400-02
Chr06	irgsp1_rep	three_prime_UTR	28620001	28620310	.	+	.	Parent=Os06t0686400-02
Chr06	irgsp1_rep	mRNA	28620993	28628004	.	+	.	ID=Os06t0686500-01;Name=Os06t0686500-01;Locus_id=Os06g0686500;Note=Peptidase M3A and M3B%2C thimet/oligopeptidase F domain containing protein.;Transcript_evidence=AK103252 (DDBJ%2C Best hit);ORF_evidence=NP_199967.2 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: metalloendopeptidase activity (GO:0004222);InterPro=Peptidase M3A/M3B (IPR001567),Neurolysin/Thimet oligopeptidase%2C domain 2 (IPR024077),Metallopeptidase%2C catalytic domain (IPR024079),Neurolysin/Thimet oligopeptidase%2C N-terminal (IPR024080);NIAS_FLcDNA=J033123N15;Expression=AK103252;TENOR=Os06t0686500-01;KEGG=Os06t0686500-01
Chr06	irgsp1_rep	five_prime_UTR	28620993	28621095	.	+	.	Parent=Os06t0686500-01
Chr06	irgsp1_rep	CDS	28621096	28621265	.	+	0	Parent=Os06t0686500-01
Chr06	irgsp1_rep	CDS	28621353	28621434	.	+	1	Parent=Os06t0686500-01
Chr06	irgsp1_rep	CDS	28621535	28621587	.	+	0	Parent=Os06t0686500-01
Chr06	irgsp1_rep	CDS	28621688	28621742	.	+	1	Parent=Os06t0686500-01
Chr06	irgsp1_rep	CDS	28621869	28622007	.	+	0	Parent=Os06t0686500-01
Chr06	irgsp1_rep	CDS	28622086	28622140	.	+	2	Parent=Os06t0686500-01
Chr06	irgsp1_rep	CDS	28622991	28623213	.	+	1	Parent=Os06t0686500-01
Chr06	irgsp1_rep	CDS	28623298	28623393	.	+	0	Parent=Os06t0686500-01
Chr06	irgsp1_rep	CDS	28624361	28624480	.	+	0	Parent=Os06t0686500-01
Chr06	irgsp1_rep	CDS	28624590	28624715	.	+	0	Parent=Os06t0686500-01
Chr06	irgsp1_rep	CDS	28625022	28625177	.	+	0	Parent=Os06t0686500-01
Chr06	irgsp1_rep	CDS	28625923	28626039	.	+	0	Parent=Os06t0686500-01
Chr06	irgsp1_rep	CDS	28626359	28626481	.	+	0	Parent=Os06t0686500-01
Chr06	irgsp1_rep	CDS	28626566	28626633	.	+	0	Parent=Os06t0686500-01
Chr06	irgsp1_rep	CDS	28626772	28626907	.	+	1	Parent=Os06t0686500-01
Chr06	irgsp1_rep	CDS	28627018	28627183	.	+	0	Parent=Os06t0686500-01
Chr06	irgsp1_rep	CDS	28627268	28627506	.	+	2	Parent=Os06t0686500-01
Chr06	irgsp1_rep	three_prime_UTR	28627507	28628004	.	+	.	Parent=Os06t0686500-01
Chr06	irgsp1_rep	mRNA	28621128	28627399	.	-	.	ID=Os06t0686550-00;Name=Os06t0686550-00;Locus_id=Os06g0686550;Note=Hypothetical protein.;Transcript_evidence=tplb0032a06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0686550-00
Chr06	irgsp1_rep	five_prime_UTR	28627273	28627399	.	-	.	Parent=Os06t0686550-00
Chr06	irgsp1_rep	five_prime_UTR	28627039	28627192	.	-	.	Parent=Os06t0686550-00
Chr06	irgsp1_rep	five_prime_UTR	28626765	28626924	.	-	.	Parent=Os06t0686550-00
Chr06	irgsp1_rep	five_prime_UTR	28626576	28626627	.	-	.	Parent=Os06t0686550-00
Chr06	irgsp1_rep	five_prime_UTR	28626339	28626489	.	-	.	Parent=Os06t0686550-00
Chr06	irgsp1_rep	five_prime_UTR	28625908	28626020	.	-	.	Parent=Os06t0686550-00
Chr06	irgsp1_rep	five_prime_UTR	28625015	28625169	.	-	.	Parent=Os06t0686550-00
Chr06	irgsp1_rep	five_prime_UTR	28624580	28624711	.	-	.	Parent=Os06t0686550-00
Chr06	irgsp1_rep	five_prime_UTR	28624359	28624472	.	-	.	Parent=Os06t0686550-00
Chr06	irgsp1_rep	five_prime_UTR	28623308	28623391	.	-	.	Parent=Os06t0686550-00
Chr06	irgsp1_rep	five_prime_UTR	28623073	28623222	.	-	.	Parent=Os06t0686550-00
Chr06	irgsp1_rep	CDS	28622991	28623072	.	-	0	Parent=Os06t0686550-00
Chr06	irgsp1_rep	CDS	28622092	28622140	.	-	2	Parent=Os06t0686550-00
Chr06	irgsp1_rep	CDS	28621836	28622013	.	-	1	Parent=Os06t0686550-00
Chr06	irgsp1_rep	three_prime_UTR	28621823	28621835	.	-	.	Parent=Os06t0686550-00
Chr06	irgsp1_rep	three_prime_UTR	28621535	28621605	.	-	.	Parent=Os06t0686550-00
Chr06	irgsp1_rep	three_prime_UTR	28621351	28621434	.	-	.	Parent=Os06t0686550-00
Chr06	irgsp1_rep	three_prime_UTR	28621128	28621263	.	-	.	Parent=Os06t0686550-00
Chr06	irgsp1_rep	mRNA	28629133	28629904	.	-	.	ID=Os06t0686600-01;Name=Os06t0686600-01;Locus_id=Os06g0686600;Note=Protein of unknown function DUF3511 domain containing protein.;Transcript_evidence=AK071855 (DDBJ%2C Best hit);ORF_evidence=A2YGD1 (UniProt);InterPro=Protein of unknown function DUF3511 (IPR021899);NIAS_FLcDNA=J023115P14;Expression=AK071855;TENOR=Os06t0686600-01;KEGG=Os06t0686600-01
Chr06	irgsp1_rep	five_prime_UTR	28629753	28629904	.	-	.	Parent=Os06t0686600-01
Chr06	irgsp1_rep	CDS	28629471	28629752	.	-	0	Parent=Os06t0686600-01
Chr06	irgsp1_rep	three_prime_UTR	28629133	28629470	.	-	.	Parent=Os06t0686600-01
Chr06	irgsp1_rep	mRNA	28639438	28641587	.	-	.	ID=Os06t0686700-01;Name=Os06t0686700-01;Locus_id=Os06g0686700;Oryzabase Gene Symbol Synonym(s)=Exp1;Oryzabase Gene Name Synonym(s)=Expressed protein;Note=Non-protein coding transcript.;Transcript_evidence=AK065448 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013020E03;Oryzabase=23081;TENOR=Os06t0686700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	exon	28641484	28641587	.	-	.	Parent=Os06t0686700-01
Chr06	irgsp1_rep	exon	28639834	28641370	.	-	.	Parent=Os06t0686700-01
Chr06	irgsp1_rep	exon	28639438	28639732	.	-	.	Parent=Os06t0686700-01
Chr06	irgsp1_rep	mRNA	28642548	28643209	.	+	.	ID=Os06t0686900-01;Name=Os06t0686900-01;Locus_id=Os06g0686900;Note=Conserved hypothetical protein.;Transcript_evidence=AK111045 (DDBJ%2C Best hit);ORF_evidence=A3BET2 (UniProt);NIAS_FLcDNA=002-175-B11;TENOR=Os06t0686900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	28642548	28642736	.	+	.	Parent=Os06t0686900-01
Chr06	irgsp1_rep	CDS	28642737	28642958	.	+	0	Parent=Os06t0686900-01
Chr06	irgsp1_rep	three_prime_UTR	28642959	28643209	.	+	.	Parent=Os06t0686900-01
Chr06	irgsp1_rep	mRNA	28643856	28647795	.	-	.	ID=Os06t0687000-00;Name=Os06t0687000-00;Locus_id=Os06g0687000;Note=Domain of unknown function DUF292%2C eukaryotic domain containing protein.;Transcript_evidence=AK376424 (DDBJ);ORF_evidence=NP_001174966.1 (RefSeq);InterPro=Domain of unknown function DUF292%2C eukaryotic (IPR005061);TENOR=Os06t0687000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	28647598	28647795	.	-	.	Parent=Os06t0687000-00
Chr06	irgsp1_rep	CDS	28647557	28647597	.	-	0	Parent=Os06t0687000-00
Chr06	irgsp1_rep	CDS	28646977	28647109	.	-	1	Parent=Os06t0687000-00
Chr06	irgsp1_rep	CDS	28646617	28646720	.	-	0	Parent=Os06t0687000-00
Chr06	irgsp1_rep	CDS	28646082	28646226	.	-	1	Parent=Os06t0687000-00
Chr06	irgsp1_rep	CDS	28645858	28645998	.	-	0	Parent=Os06t0687000-00
Chr06	irgsp1_rep	CDS	28644140	28645765	.	-	0	Parent=Os06t0687000-00
Chr06	irgsp1_rep	three_prime_UTR	28643856	28644139	.	-	.	Parent=Os06t0687000-00
Chr06	irgsp1_rep	mRNA	28644134	28647673	.	+	.	ID=Os06t0687050-00;Name=Os06t0687050-00;Locus_id=Os06g0687050;Note=Non-protein coding transcript.;Transcript_evidence=tplb0043o21 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os06t0687050-00
Chr06	irgsp1_rep	exon	28644134	28644581	.	+	.	Parent=Os06t0687050-00
Chr06	irgsp1_rep	exon	28644694	28645747	.	+	.	Parent=Os06t0687050-00
Chr06	irgsp1_rep	exon	28645838	28646004	.	+	.	Parent=Os06t0687050-00
Chr06	irgsp1_rep	exon	28646088	28646228	.	+	.	Parent=Os06t0687050-00
Chr06	irgsp1_rep	exon	28646613	28646720	.	+	.	Parent=Os06t0687050-00
Chr06	irgsp1_rep	exon	28646977	28647102	.	+	.	Parent=Os06t0687050-00
Chr06	irgsp1_rep	exon	28647546	28647673	.	+	.	Parent=Os06t0687050-00
Chr06	irgsp1_rep	mRNA	28651070	28652594	.	+	.	ID=Os06t0687100-01;Name=Os06t0687100-01;Locus_id=Os06g0687100;Oryzabase Gene Symbol Synonym(s)=OsRab5C1;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab5C1;Note=Similar to predicted protein.;Transcript_evidence=AK242104 (DDBJ%2C Best hit);ORF_evidence=XP_001779517.1 (RefSeq);GO=Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225);NIAS_FLcDNA=J075144G02;Oryzabase=11082;TENOR=Os06t0687100-01;KEGG=Os06t0687100-01
Chr06	irgsp1_rep	five_prime_UTR	28651070	28651197	.	+	.	Parent=Os06t0687100-01
Chr06	irgsp1_rep	CDS	28651198	28651221	.	+	0	Parent=Os06t0687100-01
Chr06	irgsp1_rep	CDS	28651303	28651377	.	+	0	Parent=Os06t0687100-01
Chr06	irgsp1_rep	CDS	28651458	28651628	.	+	0	Parent=Os06t0687100-01
Chr06	irgsp1_rep	CDS	28651801	28651849	.	+	0	Parent=Os06t0687100-01
Chr06	irgsp1_rep	CDS	28651982	28652055	.	+	2	Parent=Os06t0687100-01
Chr06	irgsp1_rep	CDS	28652165	28652256	.	+	0	Parent=Os06t0687100-01
Chr06	irgsp1_rep	CDS	28652340	28652457	.	+	1	Parent=Os06t0687100-01
Chr06	irgsp1_rep	three_prime_UTR	28652458	28652594	.	+	.	Parent=Os06t0687100-01
Chr06	irgsp1_rep	mRNA	28652793	28654123	.	+	.	ID=Os06t0687200-01;Name=Os06t0687200-01;Locus_id=Os06g0687200;RAP-DB Gene Symbol Synonym(s)=OsDIRP1;RAP-DB Gene Name Synonym(s)=Oryza sativa Drought-Induced RING Protein 1;Note=Putative RING E3 ubiquitin (Ub) ligase%2C Negative regulator of drought and salt stress responses%2C Positive factor of cold stress response;Transcript_evidence=AK058749;ORF_evidence=Q653G4;InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841);NIAS_FLcDNA=001-019-H07;Manual Curation=December 25%2C 2018;Literature_PMID=30568669;Expression=AK058749;TENOR=Os06t0687200-01;KEGG=Os06t0687200-01;Subcellular location=nucleus (GO:0005634)
Chr06	irgsp1_rep	five_prime_UTR	28652793	28652883	.	+	.	Parent=Os06t0687200-01
Chr06	irgsp1_rep	CDS	28652884	28654011	.	+	0	Parent=Os06t0687200-01
Chr06	irgsp1_rep	three_prime_UTR	28654012	28654123	.	+	.	Parent=Os06t0687200-01
Chr06	irgsp1_rep	mRNA	28658281	28662368	.	-	.	ID=Os06t0687400-01;Name=Os06t0687400-01;Locus_id=Os06g0687400;Note=Similar to auxin-independent growth promoter-like protein.;Transcript_evidence=AK072400 (DDBJ%2C Best hit);ORF_evidence=NP_001152550.1 (RefSeq);NIAS_FLcDNA=J023078C17;TENOR=Os06t0687400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	28662231	28662368	.	-	0	Parent=Os06t0687400-01
Chr06	irgsp1_rep	CDS	28662079	28662129	.	-	0	Parent=Os06t0687400-01
Chr06	irgsp1_rep	CDS	28661885	28661975	.	-	0	Parent=Os06t0687400-01
Chr06	irgsp1_rep	CDS	28661199	28661338	.	-	2	Parent=Os06t0687400-01
Chr06	irgsp1_rep	three_prime_UTR	28661086	28661198	.	-	.	Parent=Os06t0687400-01
Chr06	irgsp1_rep	three_prime_UTR	28659830	28660961	.	-	.	Parent=Os06t0687400-01
Chr06	irgsp1_rep	three_prime_UTR	28659618	28659741	.	-	.	Parent=Os06t0687400-01
Chr06	irgsp1_rep	three_prime_UTR	28659315	28659506	.	-	.	Parent=Os06t0687400-01
Chr06	irgsp1_rep	three_prime_UTR	28658281	28658816	.	-	.	Parent=Os06t0687400-01
Chr06	irgsp1_rep	mRNA	28658265	28660275	.	-	.	ID=Os06t0687400-02;Name=Os06t0687400-02;Locus_id=Os06g0687400;Note=Similar to auxin-independent growth promoter-like protein.;Transcript_evidence=AK060934 (DDBJ%2C Best hit);ORF_evidence=NP_001152550.1 (RefSeq);InterPro=GDP-fucose protein O-fucosyltransferase (IPR019378);NIAS_FLcDNA=006-201-B09;Expression=AK060934;TENOR=Os06t0687400-02;KEGG=Os06t0687400-02
Chr06	irgsp1_rep	five_prime_UTR	28660275	28660275	.	-	.	Parent=Os06t0687400-02
Chr06	irgsp1_rep	CDS	28660177	28660274	.	-	0	Parent=Os06t0687400-02
Chr06	irgsp1_rep	CDS	28659830	28659973	.	-	1	Parent=Os06t0687400-02
Chr06	irgsp1_rep	CDS	28659618	28659741	.	-	1	Parent=Os06t0687400-02
Chr06	irgsp1_rep	CDS	28659315	28659506	.	-	0	Parent=Os06t0687400-02
Chr06	irgsp1_rep	CDS	28658454	28658816	.	-	0	Parent=Os06t0687400-02
Chr06	irgsp1_rep	three_prime_UTR	28658265	28658453	.	-	.	Parent=Os06t0687400-02
Chr06	irgsp1_rep	mRNA	28663550	28667819	.	-	.	ID=Os06t0687450-01;Name=Os06t0687450-01;Locus_id=Os06g0687450;Note=Similar to dehydration-responsive protein-related.;Transcript_evidence=AK242712 (DDBJ%2C Best hit);ORF_evidence=NP_196947.2 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Protein of unknown function DUF248%2C methyltransferase putative (IPR004159),Twin-arginine translocation pathway%2C signal sequence (IPR006311);NIAS_FLcDNA=J090041K24;TENOR=Os06t0687450-01;KEGG=Os06t0687450-01
Chr06	irgsp1_rep	five_prime_UTR	28667683	28667819	.	-	.	Parent=Os06t0687450-01
Chr06	irgsp1_rep	CDS	28667461	28667682	.	-	0	Parent=Os06t0687450-01
Chr06	irgsp1_rep	CDS	28667201	28667365	.	-	0	Parent=Os06t0687450-01
Chr06	irgsp1_rep	CDS	28666889	28667071	.	-	0	Parent=Os06t0687450-01
Chr06	irgsp1_rep	CDS	28666205	28666799	.	-	0	Parent=Os06t0687450-01
Chr06	irgsp1_rep	CDS	28665244	28665356	.	-	2	Parent=Os06t0687450-01
Chr06	irgsp1_rep	CDS	28664923	28665143	.	-	0	Parent=Os06t0687450-01
Chr06	irgsp1_rep	CDS	28663789	28664095	.	-	1	Parent=Os06t0687450-01
Chr06	irgsp1_rep	three_prime_UTR	28663550	28663788	.	-	.	Parent=Os06t0687450-01
Chr06	irgsp1_rep	mRNA	28670224	28674822	.	+	.	ID=Os06t0687500-01;Name=Os06t0687500-01;Locus_id=Os06g0687500;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK061485 (DDBJ%2C Best hit);ORF_evidence=E6NU88 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=006-309-A02;Expression=AK061485;TENOR=Os06t0687500-01;KEGG=Os06t0687500-01
Chr06	irgsp1_rep	five_prime_UTR	28670224	28670337	.	+	.	Parent=Os06t0687500-01
Chr06	irgsp1_rep	CDS	28670338	28670661	.	+	0	Parent=Os06t0687500-01
Chr06	irgsp1_rep	CDS	28670802	28670864	.	+	0	Parent=Os06t0687500-01
Chr06	irgsp1_rep	CDS	28671030	28671114	.	+	0	Parent=Os06t0687500-01
Chr06	irgsp1_rep	CDS	28671214	28671276	.	+	2	Parent=Os06t0687500-01
Chr06	irgsp1_rep	CDS	28671843	28671876	.	+	2	Parent=Os06t0687500-01
Chr06	irgsp1_rep	CDS	28673206	28673296	.	+	1	Parent=Os06t0687500-01
Chr06	irgsp1_rep	three_prime_UTR	28673297	28673312	.	+	.	Parent=Os06t0687500-01
Chr06	irgsp1_rep	three_prime_UTR	28673391	28673460	.	+	.	Parent=Os06t0687500-01
Chr06	irgsp1_rep	three_prime_UTR	28674166	28674248	.	+	.	Parent=Os06t0687500-01
Chr06	irgsp1_rep	three_prime_UTR	28674410	28674822	.	+	.	Parent=Os06t0687500-01
Chr06	irgsp1_rep	mRNA	28679477	28680929	.	+	.	ID=Os06t0687600-00;Name=Os06t0687600-00;Locus_id=Os06g0687600;Oryzabase Gene Symbol Synonym(s)=CDC2;Oryzabase Gene Name Synonym(s)=cdc2 (cyclin-dependent kinase 2) -like gene;Note=Protein of unknown function DUF579%2C plant family protein.;Transcript_evidence=CT837964 (DDBJ%2C Best hit);ORF_evidence=Q25AL9 (UniProt);InterPro=Conserved hypothetical protein CHP01627 (IPR006514),Protein of unknown function DUF579 (IPR021148);Oryzabase=19592;TENOR=Os06t0687600-00;KEGG=Os06t0687600-00
Chr06	irgsp1_rep	five_prime_UTR	28679477	28679555	.	+	.	Parent=Os06t0687600-00
Chr06	irgsp1_rep	five_prime_UTR	28679564	28679664	.	+	.	Parent=Os06t0687600-00
Chr06	irgsp1_rep	CDS	28679665	28680401	.	+	0	Parent=Os06t0687600-00
Chr06	irgsp1_rep	CDS	28680472	28680745	.	+	1	Parent=Os06t0687600-00
Chr06	irgsp1_rep	three_prime_UTR	28680746	28680929	.	+	.	Parent=Os06t0687600-00
Chr06	irgsp1_rep	mRNA	28682065	28684964	.	-	.	ID=Os06t0687700-01;Name=Os06t0687700-01;Locus_id=Os06g0687700;Note=Similar to T-complex protein 1%2C eta subunit (TCP-1-eta) (CCT-eta) (HIV-1 Nef interacting protein).;Transcript_evidence=AK109357 (DDBJ%2C Best hit);ORF_evidence=D9ZJD7 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: cellular protein metabolic process (GO:0044267),Molecular Function: ATP binding (GO:0005524),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Chaperonin Cpn60/TCP-1 (IPR002423),T-complex protein 1%2C eta subunit (IPR012720),Chaperone%2C tailless complex polypeptide 1 (IPR017998);NIAS_FLcDNA=006-206-A07;Expression=AK109357;TENOR=Os06t0687700-01;KEGG=Os06t0687700-01
Chr06	irgsp1_rep	CDS	28684827	28684964	.	-	0	Parent=Os06t0687700-01
Chr06	irgsp1_rep	CDS	28684621	28684737	.	-	0	Parent=Os06t0687700-01
Chr06	irgsp1_rep	CDS	28684386	28684505	.	-	0	Parent=Os06t0687700-01
Chr06	irgsp1_rep	CDS	28684210	28684308	.	-	0	Parent=Os06t0687700-01
Chr06	irgsp1_rep	CDS	28684038	28684127	.	-	0	Parent=Os06t0687700-01
Chr06	irgsp1_rep	CDS	28683332	28683413	.	-	0	Parent=Os06t0687700-01
Chr06	irgsp1_rep	CDS	28683109	28683197	.	-	2	Parent=Os06t0687700-01
Chr06	irgsp1_rep	CDS	28682956	28683030	.	-	0	Parent=Os06t0687700-01
Chr06	irgsp1_rep	CDS	28682309	28682407	.	-	0	Parent=Os06t0687700-01
Chr06	irgsp1_rep	three_prime_UTR	28682065	28682308	.	-	.	Parent=Os06t0687700-01
Chr06	irgsp1_rep	mRNA	28688944	28693950	.	+	.	ID=Os06t0687800-01;Name=Os06t0687800-01;Locus_id=Os06g0687800;Note=Similar to Pincher (EH-domain containing 4).;Transcript_evidence=AK072593 (DDBJ%2C Best hit);ORF_evidence=B6U193 (UniProt);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: GTP binding (GO:0005525);InterPro=EPS15 homology (EH) (IPR000261),Dynamin%2C GTPase domain (IPR001401),Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J023133F22;Expression=AK072593;TENOR=Os06t0687800-01;KEGG=Os06t0687800-01
Chr06	irgsp1_rep	five_prime_UTR	28688944	28689040	.	+	.	Parent=Os06t0687800-01
Chr06	irgsp1_rep	CDS	28689041	28689125	.	+	0	Parent=Os06t0687800-01
Chr06	irgsp1_rep	CDS	28689256	28689335	.	+	2	Parent=Os06t0687800-01
Chr06	irgsp1_rep	CDS	28689424	28689492	.	+	0	Parent=Os06t0687800-01
Chr06	irgsp1_rep	CDS	28689589	28689646	.	+	0	Parent=Os06t0687800-01
Chr06	irgsp1_rep	CDS	28689735	28689787	.	+	2	Parent=Os06t0687800-01
Chr06	irgsp1_rep	CDS	28689882	28689924	.	+	0	Parent=Os06t0687800-01
Chr06	irgsp1_rep	CDS	28690013	28690074	.	+	2	Parent=Os06t0687800-01
Chr06	irgsp1_rep	CDS	28690567	28690680	.	+	0	Parent=Os06t0687800-01
Chr06	irgsp1_rep	CDS	28690836	28690938	.	+	0	Parent=Os06t0687800-01
Chr06	irgsp1_rep	CDS	28691030	28691079	.	+	2	Parent=Os06t0687800-01
Chr06	irgsp1_rep	CDS	28691791	28691919	.	+	0	Parent=Os06t0687800-01
Chr06	irgsp1_rep	CDS	28691993	28692244	.	+	0	Parent=Os06t0687800-01
Chr06	irgsp1_rep	CDS	28692337	28692416	.	+	0	Parent=Os06t0687800-01
Chr06	irgsp1_rep	CDS	28692693	28692819	.	+	1	Parent=Os06t0687800-01
Chr06	irgsp1_rep	CDS	28692900	28693043	.	+	0	Parent=Os06t0687800-01
Chr06	irgsp1_rep	CDS	28693502	28693687	.	+	0	Parent=Os06t0687800-01
Chr06	irgsp1_rep	three_prime_UTR	28693688	28693950	.	+	.	Parent=Os06t0687800-01
Chr06	irgsp1_rep	mRNA	28688979	28693688	.	-	.	ID=Os06t0687850-00;Name=Os06t0687850-00;Locus_id=Os06g0687850;Note=Non-protein coding transcript.;Transcript_evidence=tplb0032i10 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os06t0687850-00
Chr06	irgsp1_rep	exon	28693515	28693688	.	-	.	Parent=Os06t0687850-00
Chr06	irgsp1_rep	exon	28692919	28693054	.	-	.	Parent=Os06t0687850-00
Chr06	irgsp1_rep	exon	28692706	28692839	.	-	.	Parent=Os06t0687850-00
Chr06	irgsp1_rep	exon	28692333	28692432	.	-	.	Parent=Os06t0687850-00
Chr06	irgsp1_rep	exon	28691992	28692240	.	-	.	Parent=Os06t0687850-00
Chr06	irgsp1_rep	exon	28691798	28691918	.	-	.	Parent=Os06t0687850-00
Chr06	irgsp1_rep	exon	28691011	28691086	.	-	.	Parent=Os06t0687850-00
Chr06	irgsp1_rep	exon	28690838	28690919	.	-	.	Parent=Os06t0687850-00
Chr06	irgsp1_rep	exon	28690491	28690677	.	-	.	Parent=Os06t0687850-00
Chr06	irgsp1_rep	exon	28689526	28689735	.	-	.	Parent=Os06t0687850-00
Chr06	irgsp1_rep	exon	28689251	28689344	.	-	.	Parent=Os06t0687850-00
Chr06	irgsp1_rep	exon	28688979	28689120	.	-	.	Parent=Os06t0687850-00
Chr06	irgsp1_rep	mRNA	28696438	28698394	.	+	.	ID=Os06t0687900-01;Name=Os06t0687900-01;Locus_id=Os06g0687900;Oryzabase Gene Symbol Synonym(s)=OsIRX14%2C IRX14%2C OsGT43J%2C GT43J%2C OsGT43J/OsIRX14;Oryzabase Gene Name Synonym(s)=IRREGULAR XYLEM 14%2C glycosyltransferase family GT43 member J;Note=Similar to UDP-glucuronyltransferase-l.;Transcript_evidence=AK066791 (DDBJ%2C Best hit);ORF_evidence=Q50HU8 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity (GO:0015018);InterPro=Glycosyl transferase%2C family 43 (IPR005027);NIAS_FLcDNA=J013084K17;Oryzabase=11760;Expression=AK066791;TENOR=Os06t0687900-01;KEGG=Os06t0687900-01
Chr06	irgsp1_rep	CDS	28696438	28696619	.	+	0	Parent=Os06t0687900-01
Chr06	irgsp1_rep	CDS	28697972	28698152	.	+	1	Parent=Os06t0687900-01
Chr06	irgsp1_rep	three_prime_UTR	28698153	28698394	.	+	.	Parent=Os06t0687900-01
Chr06	irgsp1_rep	mRNA	28698167	28698394	.	+	.	ID=Os06t0687900-02;Name=Os06t0687900-02;Locus_id=Os06g0687900;Oryzabase Gene Symbol Synonym(s)=OsIRX14%2C IRX14%2C OsGT43J%2C GT43J%2C OsGT43J/OsIRX14;Oryzabase Gene Name Synonym(s)=IRREGULAR XYLEM 14%2C glycosyltransferase family GT43 member J;Note=Non-protein coding transcript.;Transcript_evidence=AK058927 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-009-C04;Oryzabase=11760;TENOR=Os06t0687900-02
Chr06	irgsp1_rep	exon	28698167	28698394	.	+	.	Parent=Os06t0687900-02
Chr06	irgsp1_rep	mRNA	28699601	28706328	.	+	.	ID=Os06t0688100-01;Name=Os06t0688100-01;Locus_id=Os06g0688100;CGSNL Gene Symbol=DLN173;CGSNL Gene Name=DLN REPRESSOR 173;Oryzabase Gene Symbol Synonym(s)=OsDLN173;Oryzabase Gene Name Synonym(s)=DLN repressor 173%2C DLN motif protein 173;Note=Hypothetical conserved gene.;Transcript_evidence=AK063450 (DDBJ%2C Best hit);ORF_evidence=B8B1T2 (UniProt);InterPro=RNA polymerase I specific transcription initiation factor RRN3 (IPR007991);NIAS_FLcDNA=001-115-F12;Oryzabase=23211;TENOR=Os06t0688100-01;KEGG=Os06t0688100-01
Chr06	irgsp1_rep	five_prime_UTR	28699601	28699697	.	+	.	Parent=Os06t0688100-01
Chr06	irgsp1_rep	five_prime_UTR	28699781	28699838	.	+	.	Parent=Os06t0688100-01
Chr06	irgsp1_rep	CDS	28699839	28699943	.	+	0	Parent=Os06t0688100-01
Chr06	irgsp1_rep	CDS	28701182	28701286	.	+	0	Parent=Os06t0688100-01
Chr06	irgsp1_rep	CDS	28701378	28701449	.	+	0	Parent=Os06t0688100-01
Chr06	irgsp1_rep	CDS	28701525	28701596	.	+	0	Parent=Os06t0688100-01
Chr06	irgsp1_rep	CDS	28701676	28701912	.	+	0	Parent=Os06t0688100-01
Chr06	irgsp1_rep	CDS	28702261	28702371	.	+	0	Parent=Os06t0688100-01
Chr06	irgsp1_rep	CDS	28702463	28702576	.	+	0	Parent=Os06t0688100-01
Chr06	irgsp1_rep	CDS	28702925	28703026	.	+	0	Parent=Os06t0688100-01
Chr06	irgsp1_rep	CDS	28703891	28703959	.	+	0	Parent=Os06t0688100-01
Chr06	irgsp1_rep	CDS	28704100	28704206	.	+	0	Parent=Os06t0688100-01
Chr06	irgsp1_rep	CDS	28704610	28704693	.	+	1	Parent=Os06t0688100-01
Chr06	irgsp1_rep	CDS	28704781	28704804	.	+	1	Parent=Os06t0688100-01
Chr06	irgsp1_rep	CDS	28706253	28706328	.	+	1	Parent=Os06t0688100-01
Chr06	irgsp1_rep	mRNA	28699609	28706342	.	+	.	ID=Os06t0688100-02;Name=Os06t0688100-02;Locus_id=Os06g0688100;CGSNL Gene Symbol=DLN173;CGSNL Gene Name=DLN REPRESSOR 173;Oryzabase Gene Symbol Synonym(s)=OsDLN173;Oryzabase Gene Name Synonym(s)=DLN repressor 173%2C DLN motif protein 173;Note=RNA polymerase I specific transcription initiation factor RRN3 family protein.;Transcript_evidence=AK101144 (DDBJ%2C Best hit);ORF_evidence=B8B1T2 (UniProt);InterPro=RNA polymerase I specific transcription initiation factor RRN3 (IPR007991);NIAS_FLcDNA=J033026O11;Oryzabase=23211;Expression=AK101144;TENOR=Os06t0688100-02;KEGG=Os06t0688100-02
Chr06	irgsp1_rep	five_prime_UTR	28699609	28699697	.	+	.	Parent=Os06t0688100-02
Chr06	irgsp1_rep	five_prime_UTR	28699781	28699838	.	+	.	Parent=Os06t0688100-02
Chr06	irgsp1_rep	CDS	28699839	28699943	.	+	0	Parent=Os06t0688100-02
Chr06	irgsp1_rep	CDS	28701182	28701286	.	+	0	Parent=Os06t0688100-02
Chr06	irgsp1_rep	CDS	28701378	28701449	.	+	0	Parent=Os06t0688100-02
Chr06	irgsp1_rep	CDS	28701525	28701596	.	+	0	Parent=Os06t0688100-02
Chr06	irgsp1_rep	CDS	28701676	28701912	.	+	0	Parent=Os06t0688100-02
Chr06	irgsp1_rep	CDS	28702261	28702371	.	+	0	Parent=Os06t0688100-02
Chr06	irgsp1_rep	CDS	28702463	28702576	.	+	0	Parent=Os06t0688100-02
Chr06	irgsp1_rep	CDS	28702925	28703026	.	+	0	Parent=Os06t0688100-02
Chr06	irgsp1_rep	CDS	28703891	28703959	.	+	0	Parent=Os06t0688100-02
Chr06	irgsp1_rep	CDS	28704100	28704206	.	+	0	Parent=Os06t0688100-02
Chr06	irgsp1_rep	CDS	28704610	28704693	.	+	1	Parent=Os06t0688100-02
Chr06	irgsp1_rep	CDS	28704781	28704877	.	+	1	Parent=Os06t0688100-02
Chr06	irgsp1_rep	CDS	28705000	28705119	.	+	0	Parent=Os06t0688100-02
Chr06	irgsp1_rep	CDS	28705316	28705500	.	+	0	Parent=Os06t0688100-02
Chr06	irgsp1_rep	CDS	28705718	28706006	.	+	1	Parent=Os06t0688100-02
Chr06	irgsp1_rep	three_prime_UTR	28706007	28706342	.	+	.	Parent=Os06t0688100-02
Chr06	irgsp1_rep	mRNA	28703027	28706311	.	+	.	ID=Os06t0688100-03;Name=Os06t0688100-03;Locus_id=Os06g0688100;CGSNL Gene Symbol=DLN173;CGSNL Gene Name=DLN REPRESSOR 173;Oryzabase Gene Symbol Synonym(s)=OsDLN173;Oryzabase Gene Name Synonym(s)=DLN repressor 173%2C DLN motif protein 173;Note=RNA polymerase I specific transcription initiation factor RRN3 domain containing protein.;Transcript_evidence=AK073794 (DDBJ%2C Best hit);ORF_evidence=B8B1T2 (UniProt);InterPro=RNA polymerase I specific transcription initiation factor RRN3 (IPR007991);NIAS_FLcDNA=J033070M08;Oryzabase=23211;Expression=AK073794;TENOR=Os06t0688100-03;KEGG=Os06t0688100-03
Chr06	irgsp1_rep	five_prime_UTR	28703027	28703881	.	+	.	Parent=Os06t0688100-03
Chr06	irgsp1_rep	CDS	28703882	28703959	.	+	0	Parent=Os06t0688100-03
Chr06	irgsp1_rep	CDS	28704100	28704206	.	+	0	Parent=Os06t0688100-03
Chr06	irgsp1_rep	CDS	28704610	28704693	.	+	1	Parent=Os06t0688100-03
Chr06	irgsp1_rep	CDS	28704781	28704877	.	+	1	Parent=Os06t0688100-03
Chr06	irgsp1_rep	CDS	28705000	28705119	.	+	0	Parent=Os06t0688100-03
Chr06	irgsp1_rep	CDS	28705316	28705500	.	+	0	Parent=Os06t0688100-03
Chr06	irgsp1_rep	CDS	28705718	28706006	.	+	1	Parent=Os06t0688100-03
Chr06	irgsp1_rep	three_prime_UTR	28706007	28706311	.	+	.	Parent=Os06t0688100-03
Chr06	irgsp1_rep	mRNA	28705834	28706417	.	+	.	ID=Os06t0688100-04;Name=Os06t0688100-04;Locus_id=Os06g0688100;CGSNL Gene Symbol=DLN173;CGSNL Gene Name=DLN REPRESSOR 173;Oryzabase Gene Symbol Synonym(s)=OsDLN173;Oryzabase Gene Name Synonym(s)=DLN repressor 173%2C DLN motif protein 173;Note=Hypothetical conserved gene.;Transcript_evidence=AK059214 (DDBJ%2C Best hit),AK104948 (DDBJ%2C Best hit);ORF_evidence=Q653F2 (UniProt);NIAS_FLcDNA=001-024-C06,001-109-A10;Oryzabase=23211;Expression=AK059214;TENOR=Os06t0688100-04;KEGG=Os06t0688100-04
Chr06	irgsp1_rep	five_prime_UTR	28705834	28705835	.	+	.	Parent=Os06t0688100-04
Chr06	irgsp1_rep	CDS	28705836	28706006	.	+	0	Parent=Os06t0688100-04
Chr06	irgsp1_rep	three_prime_UTR	28706007	28706417	.	+	.	Parent=Os06t0688100-04
Chr06	irgsp1_rep	mRNA	28707334	28708349	.	-	.	ID=Os06t0688200-00;Name=Os06t0688200-00;Locus_id=Os06g0688200;Note=Similar to blight-associated protein p12.;Transcript_evidence=EU958297 (DDBJ);ORF_evidence=NP_001148288.1 (RefSeq);InterPro=Expansin/pollen allergen%2C DPBB domain (IPR007112),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);TENOR=Os06t0688200-00;KEGG=Os06t0688200-00
Chr06	irgsp1_rep	CDS	28708247	28708349	.	-	0	Parent=Os06t0688200-00
Chr06	irgsp1_rep	CDS	28707334	28707671	.	-	2	Parent=Os06t0688200-00
Chr06	irgsp1_rep	mRNA	28721049	28721585	.	-	.	ID=Os06t0688300-00;Name=Os06t0688300-00;Locus_id=Os06g0688300;Note=Similar to blight-associated protein p12.;Transcript_evidence=EU958297 (DDBJ);ORF_evidence=NP_001148288.1 (RefSeq);InterPro=Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);TENOR=Os06t0688300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	28721483	28721585	.	-	0	Parent=Os06t0688300-00
Chr06	irgsp1_rep	CDS	28721049	28721350	.	-	2	Parent=Os06t0688300-00
Chr06	irgsp1_rep	mRNA	28723153	28724356	.	-	.	ID=Os06t0688400-00;Name=Os06t0688400-00;Locus_id=Os06g0688400;Oryzabase Gene Symbol Synonym(s)=OsFbox323%2C Os_F0105;Oryzabase Gene Name Synonym(s)=F-box protein 323;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=EU962397 (DDBJ);ORF_evidence=A2YFK1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17100;TENOR=Os06t0688400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	28723595	28724356	.	-	0	Parent=Os06t0688400-00
Chr06	irgsp1_rep	three_prime_UTR	28723153	28723594	.	-	.	Parent=Os06t0688400-00
Chr06	irgsp1_rep	mRNA	28733630	28734972	.	+	.	ID=Os06t0688800-00;Name=Os06t0688800-00;Locus_id=Os06g0688800;Note=Hypothetical conserved gene.;Transcript_evidence=AK108113 (DDBJ%2C Secondary hit);ORF_evidence=B8AI43 (UniProt);Expression=AK108113;TENOR=Os06t0688800-00;KEGG=Os06t0688800-00
Chr06	irgsp1_rep	five_prime_UTR	28733630	28733631	.	+	.	Parent=Os06t0688800-00
Chr06	irgsp1_rep	CDS	28733632	28733915	.	+	0	Parent=Os06t0688800-00
Chr06	irgsp1_rep	CDS	28734013	28734025	.	+	1	Parent=Os06t0688800-00
Chr06	irgsp1_rep	three_prime_UTR	28734026	28734246	.	+	.	Parent=Os06t0688800-00
Chr06	irgsp1_rep	three_prime_UTR	28734371	28734972	.	+	.	Parent=Os06t0688800-00
Chr06	irgsp1_rep	mRNA	28733940	28734992	.	-	.	ID=Os06t0688850-00;Name=Os06t0688850-00;Locus_id=Os06g0688850;Note=Similar to H0723C07.4 protein.;Transcript_evidence=BT087959 (DDBJ);ORF_evidence=Q259M7 (UniProt);TENOR=Os06t0688850-00
Chr06	irgsp1_rep	CDS	28733940	28734992	.	-	0	Parent=Os06t0688850-00
Chr06	irgsp1_rep	mRNA	28750207	28750559	.	+	.	ID=Os06t0689483-00;Name=Os06t0689483-00;Locus_id=Os06g0689483;Note=Non-protein coding transcript.;Transcript_evidence=EU941368 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0689483-00
Chr06	irgsp1_rep	exon	28750207	28750559	.	+	.	Parent=Os06t0689483-00
Chr06	irgsp1_rep	mRNA	28752549	28757404	.	-	.	ID=Os06t0689600-01;Name=Os06t0689600-01;Locus_id=Os06g0689600;CGSNL Gene Symbol=RLCK214;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 214;Oryzabase Gene Symbol Synonym(s)=OsRLCK214;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 214;Note=Hypothetical conserved gene.;Transcript_evidence=AK243455 (DDBJ%2C Best hit);ORF_evidence=Q654Z6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J100070J20;Oryzabase=18910;TENOR=Os06t0689600-01;KEGG=Os06t0689600-01
Chr06	irgsp1_rep	five_prime_UTR	28757338	28757404	.	-	.	Parent=Os06t0689600-01
Chr06	irgsp1_rep	CDS	28756909	28757337	.	-	0	Parent=Os06t0689600-01
Chr06	irgsp1_rep	CDS	28756342	28756394	.	-	0	Parent=Os06t0689600-01
Chr06	irgsp1_rep	CDS	28755235	28755317	.	-	1	Parent=Os06t0689600-01
Chr06	irgsp1_rep	CDS	28753911	28754092	.	-	2	Parent=Os06t0689600-01
Chr06	irgsp1_rep	CDS	28753498	28753699	.	-	0	Parent=Os06t0689600-01
Chr06	irgsp1_rep	CDS	28753108	28753345	.	-	2	Parent=Os06t0689600-01
Chr06	irgsp1_rep	CDS	28752842	28753028	.	-	1	Parent=Os06t0689600-01
Chr06	irgsp1_rep	three_prime_UTR	28752549	28752841	.	-	.	Parent=Os06t0689600-01
Chr06	irgsp1_rep	mRNA	28758921	28759355	.	+	.	ID=Os06t0689700-00;Name=Os06t0689700-00;Locus_id=Os06g0689700;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q654Z5 (UniProt);TENOR=Os06t0689700-00;KEGG=Os06t0689700-00
Chr06	irgsp1_rep	CDS	28758921	28759355	.	+	0	Parent=Os06t0689700-00
Chr06	irgsp1_rep	mRNA	28768494	28770137	.	+	.	ID=Os06t0690100-01;Name=Os06t0690100-01;Locus_id=Os06g0690100;Oryzabase Gene Symbol Synonym(s)=OsSTA178%2C STA178;Note=Similar to Pentatricopeptide repeat protein.;Transcript_evidence=AK109757 (DDBJ%2C Best hit);ORF_evidence=D2STE4 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=002-146-G04;Oryzabase=19461;TENOR=Os06t0690100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	28768494	28768742	.	+	.	Parent=Os06t0690100-01
Chr06	irgsp1_rep	CDS	28768743	28769003	.	+	0	Parent=Os06t0690100-01
Chr06	irgsp1_rep	three_prime_UTR	28769004	28770137	.	+	.	Parent=Os06t0690100-01
Chr06	irgsp1_rep	mRNA	28770374	28774431	.	-	.	ID=Os06t0690200-01;Name=Os06t0690200-01;Locus_id=Os06g0690200;CGSNL Gene Symbol=RLCK215;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 215;Oryzabase Gene Symbol Synonym(s)=OsRLCK215;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 215;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK243213 (DDBJ%2C Best hit);ORF_evidence=B8B1V0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J100042N09;Oryzabase=18911;TENOR=Os06t0690200-01;KEGG=Os06t0690200-01
Chr06	irgsp1_rep	five_prime_UTR	28774351	28774431	.	-	.	Parent=Os06t0690200-01
Chr06	irgsp1_rep	CDS	28773919	28774350	.	-	0	Parent=Os06t0690200-01
Chr06	irgsp1_rep	CDS	28773479	28773531	.	-	0	Parent=Os06t0690200-01
Chr06	irgsp1_rep	CDS	28773073	28773158	.	-	1	Parent=Os06t0690200-01
Chr06	irgsp1_rep	CDS	28772314	28772501	.	-	2	Parent=Os06t0690200-01
Chr06	irgsp1_rep	CDS	28772018	28772219	.	-	0	Parent=Os06t0690200-01
Chr06	irgsp1_rep	CDS	28771403	28771661	.	-	2	Parent=Os06t0690200-01
Chr06	irgsp1_rep	CDS	28771164	28771317	.	-	1	Parent=Os06t0690200-01
Chr06	irgsp1_rep	CDS	28770787	28771065	.	-	0	Parent=Os06t0690200-01
Chr06	irgsp1_rep	three_prime_UTR	28770374	28770786	.	-	.	Parent=Os06t0690200-01
Chr06	irgsp1_rep	mRNA	28770724	28771078	.	+	.	ID=Os06t0690400-00;Name=Os06t0690400-00;Locus_id=Os06g0690400;Note=Non-protein coding transcript.;Transcript_evidence=EU941368 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0690400-00
Chr06	irgsp1_rep	exon	28770724	28771078	.	+	.	Parent=Os06t0690400-00
Chr06	irgsp1_rep	mRNA	28787764	28788331	.	+	.	ID=Os06t0690600-01;Name=Os06t0690600-01;Locus_id=Os06g0690600;Note=Conserved hypothetical protein.;Transcript_evidence=AK107925 (DDBJ%2C Best hit);ORF_evidence=B8B1T8 (UniProt);NIAS_FLcDNA=002-134-H08;Expression=AK107925;TENOR=Os06t0690600-01;KEGG=Os06t0690600-01
Chr06	irgsp1_rep	five_prime_UTR	28787764	28787974	.	+	.	Parent=Os06t0690600-01
Chr06	irgsp1_rep	CDS	28787975	28788211	.	+	0	Parent=Os06t0690600-01
Chr06	irgsp1_rep	three_prime_UTR	28788212	28788331	.	+	.	Parent=Os06t0690600-01
Chr06	irgsp1_rep	mRNA	28789036	28797545	.	-	.	ID=Os06t0690700-01;Name=Os06t0690700-01;Locus_id=Os06g0690700;CGSNL Gene Symbol=HMA1;CGSNL Gene Name=HEAVY METAL ATPASE 1;Oryzabase Gene Symbol Synonym(s)=OsHMA1%2C osHMA1;Oryzabase Gene Name Synonym(s)=heavy metal ATPase 1%2C heavy metal P-Type ATPase 1;Note=Similar to Potential cadmium/zinc-transporting ATPase HMA1 (EC 3.6.3.3) (EC 3.6.3.5).;Transcript_evidence=AK100055 (DDBJ%2C Best hit);ORF_evidence=NP_195444.1 (RefSeq);GO=Biological Process: ATP biosynthetic process (GO:0006754),Biological Process: cation transport (GO:0006812),Biological Process: metabolic process (GO:0008152),Biological Process: metal ion transport (GO:0030001),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662),Molecular Function: metal ion binding (GO:0046872);InterPro=ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),Haloacid dehalogenase-like hydrolase (IPR005834),ATPase%2C P-type%2C heavy metal translocating (IPR006416),ATPase%2C P-type%2C ATPase-associated domain (IPR008250),ATPase%2C P-type phosphorylation site (IPR018303),HAD-like domain (IPR023214),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C  P-type%2C cytoplasmic transduction domain A (IPR023300);NIAS_FLcDNA=J013157P15;Oryzabase=13006;Expression=AK100055;TENOR=Os06t0690700-01;KEGG=Os06t0690700-01 (EC:3.6.3.3)
Chr06	irgsp1_rep	five_prime_UTR	28797382	28797545	.	-	.	Parent=Os06t0690700-01
Chr06	irgsp1_rep	CDS	28796890	28797381	.	-	0	Parent=Os06t0690700-01
Chr06	irgsp1_rep	CDS	28796095	28796245	.	-	0	Parent=Os06t0690700-01
Chr06	irgsp1_rep	CDS	28795687	28795871	.	-	2	Parent=Os06t0690700-01
Chr06	irgsp1_rep	CDS	28795334	28795480	.	-	0	Parent=Os06t0690700-01
Chr06	irgsp1_rep	CDS	28794501	28794696	.	-	0	Parent=Os06t0690700-01
Chr06	irgsp1_rep	CDS	28794146	28794258	.	-	2	Parent=Os06t0690700-01
Chr06	irgsp1_rep	CDS	28793483	28793724	.	-	0	Parent=Os06t0690700-01
Chr06	irgsp1_rep	CDS	28792798	28792903	.	-	1	Parent=Os06t0690700-01
Chr06	irgsp1_rep	CDS	28792446	28792610	.	-	0	Parent=Os06t0690700-01
Chr06	irgsp1_rep	CDS	28791621	28791837	.	-	0	Parent=Os06t0690700-01
Chr06	irgsp1_rep	CDS	28790296	28790483	.	-	2	Parent=Os06t0690700-01
Chr06	irgsp1_rep	CDS	28790115	28790201	.	-	0	Parent=Os06t0690700-01
Chr06	irgsp1_rep	CDS	28789183	28789362	.	-	0	Parent=Os06t0690700-01
Chr06	irgsp1_rep	three_prime_UTR	28789036	28789182	.	-	.	Parent=Os06t0690700-01
Chr06	irgsp1_rep	mRNA	28789036	28793594	.	-	.	ID=Os06t0690700-02;Name=Os06t0690700-02;Locus_id=Os06g0690700;CGSNL Gene Symbol=HMA1;CGSNL Gene Name=HEAVY METAL ATPASE 1;Oryzabase Gene Symbol Synonym(s)=OsHMA1%2C osHMA1;Oryzabase Gene Name Synonym(s)=heavy metal ATPase 1%2C heavy metal P-Type ATPase 1;Note=Similar to HMA1 (Heavy metal ATPase 1)%3B copper-exporting ATPase.;Transcript_evidence=AK058451 (DDBJ%2C Best hit);ORF_evidence=NP_195444.1 (RefSeq);GO=Biological Process: cation transport (GO:0006812),Biological Process: metabolic process (GO:0008152),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C catalyzing transmembrane movement of substances (GO:0016820);InterPro=ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),Haloacid dehalogenase-like hydrolase (IPR005834),HAD-like domain (IPR023214),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C cation-transporting%2C domain N (IPR023306);NIAS_FLcDNA=001-015-H01;Oryzabase=13006;Expression=AK058451;TENOR=Os06t0690700-02;KEGG=Os06t0690700-02
Chr06	irgsp1_rep	five_prime_UTR	28793593	28793594	.	-	.	Parent=Os06t0690700-02
Chr06	irgsp1_rep	CDS	28793483	28793592	.	-	0	Parent=Os06t0690700-02
Chr06	irgsp1_rep	CDS	28792798	28792903	.	-	1	Parent=Os06t0690700-02
Chr06	irgsp1_rep	CDS	28792446	28792610	.	-	0	Parent=Os06t0690700-02
Chr06	irgsp1_rep	CDS	28791621	28791837	.	-	0	Parent=Os06t0690700-02
Chr06	irgsp1_rep	CDS	28790296	28790483	.	-	2	Parent=Os06t0690700-02
Chr06	irgsp1_rep	CDS	28790115	28790201	.	-	0	Parent=Os06t0690700-02
Chr06	irgsp1_rep	CDS	28789183	28789362	.	-	0	Parent=Os06t0690700-02
Chr06	irgsp1_rep	three_prime_UTR	28789036	28789182	.	-	.	Parent=Os06t0690700-02
Chr06	irgsp1_rep	mRNA	28801751	28804726	.	+	.	ID=Os06t0690900-00;Name=Os06t0690900-00;Locus_id=Os06g0690900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001058418.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os06t0690900-00;KEGG=Os06t0690900-00
Chr06	irgsp1_rep	CDS	28801751	28804726	.	+	0	Parent=Os06t0690900-00
Chr06	irgsp1_rep	mRNA	28806781	28816144	.	-	.	ID=Os06t0691000-01;Name=Os06t0691000-01;Locus_id=Os06g0691000;Oryzabase Gene Symbol Synonym(s)=Rev1;Note=DNA-repair protein%2C UmuC-like domain containing protein.;Transcript_evidence=AK068150 (DDBJ%2C Best hit);ORF_evidence=B8B1U1 (UniProt);GO=Biological Process: DNA repair (GO:0006281),Cellular Component: intracellular (GO:0005622),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: damaged DNA binding (GO:0003684),Molecular Function: DNA-directed DNA polymerase activity (GO:0003887),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=DNA-repair protein%2C UmuC-like (IPR001126),BRCT (IPR001357),DNA repair protein%2C Rev1 (IPR012112),DNA polymerase%2C Y-family%2C little finger domain (IPR017961),DNA-repair protein%2C UmuC-like%2C N-terminal (IPR017963);NIAS_FLcDNA=J013129N20;Oryzabase=21292;Expression=AK068150;TENOR=Os06t0691000-01;KEGG=Os06t0691000-01 (EC:2.7.7.-)
Chr06	irgsp1_rep	five_prime_UTR	28816096	28816144	.	-	.	Parent=Os06t0691000-01
Chr06	irgsp1_rep	CDS	28815784	28816095	.	-	0	Parent=Os06t0691000-01
Chr06	irgsp1_rep	CDS	28815536	28815651	.	-	0	Parent=Os06t0691000-01
Chr06	irgsp1_rep	CDS	28815373	28815449	.	-	1	Parent=Os06t0691000-01
Chr06	irgsp1_rep	CDS	28814234	28814745	.	-	2	Parent=Os06t0691000-01
Chr06	irgsp1_rep	CDS	28813873	28814007	.	-	0	Parent=Os06t0691000-01
Chr06	irgsp1_rep	CDS	28813082	28813214	.	-	0	Parent=Os06t0691000-01
Chr06	irgsp1_rep	CDS	28812898	28812986	.	-	2	Parent=Os06t0691000-01
Chr06	irgsp1_rep	CDS	28812767	28812817	.	-	0	Parent=Os06t0691000-01
Chr06	irgsp1_rep	CDS	28812457	28812660	.	-	0	Parent=Os06t0691000-01
Chr06	irgsp1_rep	CDS	28811504	28811623	.	-	0	Parent=Os06t0691000-01
Chr06	irgsp1_rep	CDS	28811188	28811280	.	-	0	Parent=Os06t0691000-01
Chr06	irgsp1_rep	CDS	28810384	28810443	.	-	0	Parent=Os06t0691000-01
Chr06	irgsp1_rep	CDS	28810215	28810301	.	-	0	Parent=Os06t0691000-01
Chr06	irgsp1_rep	CDS	28810048	28810131	.	-	0	Parent=Os06t0691000-01
Chr06	irgsp1_rep	CDS	28809737	28809809	.	-	0	Parent=Os06t0691000-01
Chr06	irgsp1_rep	CDS	28809555	28809623	.	-	2	Parent=Os06t0691000-01
Chr06	irgsp1_rep	CDS	28808888	28808992	.	-	2	Parent=Os06t0691000-01
Chr06	irgsp1_rep	CDS	28808358	28808731	.	-	2	Parent=Os06t0691000-01
Chr06	irgsp1_rep	CDS	28807507	28808087	.	-	0	Parent=Os06t0691000-01
Chr06	irgsp1_rep	CDS	28807299	28807359	.	-	1	Parent=Os06t0691000-01
Chr06	irgsp1_rep	CDS	28807107	28807148	.	-	0	Parent=Os06t0691000-01
Chr06	irgsp1_rep	three_prime_UTR	28807022	28807106	.	-	.	Parent=Os06t0691000-01
Chr06	irgsp1_rep	three_prime_UTR	28806781	28806955	.	-	.	Parent=Os06t0691000-01
Chr06	irgsp1_rep	mRNA	28807709	28815595	.	-	.	ID=Os06t0691000-02;Name=Os06t0691000-02;Locus_id=Os06g0691000;Oryzabase Gene Symbol Synonym(s)=Rev1;Note=Hypothetical conserved gene.;Transcript_evidence=AK100072 (DDBJ%2C Best hit);ORF_evidence=B9FQM1 (UniProt);GO=Biological Process: DNA repair (GO:0006281),Cellular Component: intracellular (GO:0005622),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: damaged DNA binding (GO:0003684),Molecular Function: DNA-directed DNA polymerase activity (GO:0003887),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=DNA-repair protein%2C UmuC-like (IPR001126),BRCT (IPR001357),DNA repair protein%2C Rev1 (IPR012112),DNA polymerase%2C Y-family%2C little finger domain (IPR017961),DNA-repair protein%2C UmuC-like%2C N-terminal (IPR017963);NIAS_FLcDNA=J013169N18;Oryzabase=21292;TENOR=Os06t0691000-02
Chr06	irgsp1_rep	five_prime_UTR	28815595	28815595	.	-	.	Parent=Os06t0691000-02
Chr06	irgsp1_rep	CDS	28815536	28815594	.	-	0	Parent=Os06t0691000-02
Chr06	irgsp1_rep	CDS	28815373	28815449	.	-	1	Parent=Os06t0691000-02
Chr06	irgsp1_rep	CDS	28814234	28814745	.	-	2	Parent=Os06t0691000-02
Chr06	irgsp1_rep	CDS	28813873	28814007	.	-	0	Parent=Os06t0691000-02
Chr06	irgsp1_rep	CDS	28813082	28813214	.	-	0	Parent=Os06t0691000-02
Chr06	irgsp1_rep	CDS	28812898	28812986	.	-	2	Parent=Os06t0691000-02
Chr06	irgsp1_rep	CDS	28812767	28812817	.	-	0	Parent=Os06t0691000-02
Chr06	irgsp1_rep	CDS	28812457	28812660	.	-	0	Parent=Os06t0691000-02
Chr06	irgsp1_rep	CDS	28811504	28811623	.	-	0	Parent=Os06t0691000-02
Chr06	irgsp1_rep	CDS	28811188	28811280	.	-	0	Parent=Os06t0691000-02
Chr06	irgsp1_rep	CDS	28810384	28810443	.	-	0	Parent=Os06t0691000-02
Chr06	irgsp1_rep	CDS	28810215	28810301	.	-	0	Parent=Os06t0691000-02
Chr06	irgsp1_rep	CDS	28810048	28810131	.	-	0	Parent=Os06t0691000-02
Chr06	irgsp1_rep	CDS	28809737	28809809	.	-	0	Parent=Os06t0691000-02
Chr06	irgsp1_rep	CDS	28809555	28809623	.	-	2	Parent=Os06t0691000-02
Chr06	irgsp1_rep	CDS	28808888	28808992	.	-	2	Parent=Os06t0691000-02
Chr06	irgsp1_rep	CDS	28808358	28808731	.	-	2	Parent=Os06t0691000-02
Chr06	irgsp1_rep	CDS	28807709	28808087	.	-	0	Parent=Os06t0691000-02
Chr06	irgsp1_rep	mRNA	28818257	28819235	.	+	.	ID=Os06t0691100-00;Name=Os06t0691100-00;Locus_id=Os06g0691100;CGSNL Gene Symbol=ERF121;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 121;Oryzabase Gene Symbol Synonym(s)=OsERF#121%2C OsERF121%2C AP2/EREBP#061%2C AP2/EREBP61%2C DLN174%2C OsDLN174;Oryzabase Gene Name Synonym(s)=ethylene response factor 121%2C APETALA2/ethylene-responsive element binding protein 61%2C DLN repressor 174%2C DLN motif protein 174;Note=Pathogenesis-related transcriptional factor and ERF domain containing protein.;Transcript_evidence=BT069519 (DDBJ);ORF_evidence=NP_001147188.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);Oryzabase=10616;TENOR=Os06t0691100-00;KEGG=Os06t0691100-00
Chr06	irgsp1_rep	five_prime_UTR	28818257	28818328	.	+	.	Parent=Os06t0691100-00
Chr06	irgsp1_rep	CDS	28818329	28818895	.	+	0	Parent=Os06t0691100-00
Chr06	irgsp1_rep	three_prime_UTR	28818896	28819235	.	+	.	Parent=Os06t0691100-00
Chr06	irgsp1_rep	mRNA	28825831	28826960	.	+	.	ID=Os06t0691200-01;Name=Os06t0691200-01;Locus_id=Os06g0691200;Note=Similar to Thaumatin-like protein precursor.;Transcript_evidence=AK108191 (DDBJ%2C Best hit);ORF_evidence=Q14US7 (UniProt);InterPro=Thaumatin%2C pathogenesis-related (IPR001938),Thaumatin%2C conserved site (IPR017949);NIAS_FLcDNA=002-140-C02;Expression=AK108191;TENOR=Os06t0691200-01;KEGG=Os06t0691200-01
Chr06	irgsp1_rep	five_prime_UTR	28825831	28825905	.	+	.	Parent=Os06t0691200-01
Chr06	irgsp1_rep	CDS	28825906	28826661	.	+	0	Parent=Os06t0691200-01
Chr06	irgsp1_rep	three_prime_UTR	28826662	28826960	.	+	.	Parent=Os06t0691200-01
Chr06	irgsp1_rep	mRNA	28831648	28837128	.	-	.	ID=Os06t0691400-01;Name=Os06t0691400-01;Locus_id=Os06g0691400;CGSNL Gene Symbol=AH7;CGSNL Gene Name=AMIDOHYDROLASE 7;Oryzabase Gene Symbol Synonym(s)=OsAH7;Oryzabase Gene Name Synonym(s)=amidohydrolase 7;Note=Similar to IAA-amino acid conjugate hydrolase-like protein (Fragment).;Transcript_evidence=AK107208 (DDBJ%2C Best hit);ORF_evidence=Q5Z678 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Peptidase M20 (IPR002933),Peptidase M20%2C dimerisation (IPR011650),Amidohydrolase (IPR017439);NIAS_FLcDNA=002-125-B11;Oryzabase=23121;Expression=AK107208;TENOR=Os06t0691400-01;KEGG=Os06t0691400-01
Chr06	irgsp1_rep	five_prime_UTR	28837054	28837128	.	-	.	Parent=Os06t0691400-01
Chr06	irgsp1_rep	CDS	28836514	28837053	.	-	0	Parent=Os06t0691400-01
Chr06	irgsp1_rep	CDS	28834663	28834788	.	-	0	Parent=Os06t0691400-01
Chr06	irgsp1_rep	CDS	28832082	28832948	.	-	0	Parent=Os06t0691400-01
Chr06	irgsp1_rep	three_prime_UTR	28831648	28832081	.	-	.	Parent=Os06t0691400-01
Chr06	irgsp1_rep	mRNA	28845932	28846936	.	+	.	ID=Os06t0691500-00;Name=Os06t0691500-00;Locus_id=Os06g0691500;Note=Transcription factor IIS%2C N-terminal domain containing protein.;Transcript_evidence=EU959826 (DDBJ);ORF_evidence=Q5Z677 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Transcription factor IIS%2C N-terminal (IPR017923);TENOR=Os06t0691500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	28845932	28846936	.	+	0	Parent=Os06t0691500-00
Chr06	irgsp1_rep	mRNA	28847313	28848022	.	-	.	ID=Os06t0691600-01;Name=Os06t0691600-01;Locus_id=Os06g0691600;CGSNL Gene Symbol=CML29;CGSNL Gene Name=CALMODULIN-LIKE PROTEIN 29;Oryzabase Gene Symbol Synonym(s)=OsCML29;Oryzabase Gene Name Synonym(s)=calmodulin-like protein 29;Note=EF-Hand type domain containing protein.;Transcript_evidence=AK070430 (DDBJ%2C Best hit);ORF_evidence=NP_001150907.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J023048H06;Oryzabase=10512;Expression=AK070430;TENOR=Os06t0691600-01;KEGG=Os06t0691600-01
Chr06	irgsp1_rep	five_prime_UTR	28847940	28848022	.	-	.	Parent=Os06t0691600-01
Chr06	irgsp1_rep	CDS	28847427	28847939	.	-	0	Parent=Os06t0691600-01
Chr06	irgsp1_rep	three_prime_UTR	28847313	28847426	.	-	.	Parent=Os06t0691600-01
Chr06	irgsp1_rep	mRNA	28851711	28857260	.	-	.	ID=Os06t0691700-01;Name=Os06t0691700-01;Locus_id=Os06g0691700;Note=Hypothetical protein.;Transcript_evidence=AK069356 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023018C17;Expression=AK069356;TENOR=Os06t0691700-01;KEGG=Os06t0691700-01
Chr06	irgsp1_rep	five_prime_UTR	28857173	28857260	.	-	.	Parent=Os06t0691700-01
Chr06	irgsp1_rep	five_prime_UTR	28854634	28856683	.	-	.	Parent=Os06t0691700-01
Chr06	irgsp1_rep	CDS	28854568	28854633	.	-	0	Parent=Os06t0691700-01
Chr06	irgsp1_rep	CDS	28854163	28854495	.	-	0	Parent=Os06t0691700-01
Chr06	irgsp1_rep	three_prime_UTR	28853327	28854162	.	-	.	Parent=Os06t0691700-01
Chr06	irgsp1_rep	three_prime_UTR	28852732	28852834	.	-	.	Parent=Os06t0691700-01
Chr06	irgsp1_rep	three_prime_UTR	28851711	28852039	.	-	.	Parent=Os06t0691700-01
Chr06	irgsp1_rep	mRNA	28853373	28856934	.	+	.	ID=Os06t0691800-01;Name=Os06t0691800-01;Locus_id=Os06g0691800;RAP-DB Gene Symbol Synonym(s)=OsLRR-RLK1;RAP-DB Gene Name Synonym(s)=Leucine-rich repeat receptor-like kinase 1;CGSNL Gene Symbol=LRR-RLK1;CGSNL Gene Name=LEUCINE-RICH REPEAT RECEPTOR-LIKE KINASE 1;Oryzabase Gene Symbol Synonym(s)=OsLRR-RLK1;Oryzabase Gene Name Synonym(s)=leucine-rich repeat receptor-like kinase 1;Note=Leucine-rich repeat receptor-like kinase%2C Herbivore-induced defense response;Transcript_evidence=AK065392;ORF_evidence=Q5Z675;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=Leucine-rich repeat domain superfamily (IPR032675),Protein kinase-like domain superfamily (IPR011009),Leucine-rich repeat-containing N-terminal%2C plant-type (IPR013210),Protein kinase domain (IPR000719),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat (IPR001611),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J013022B04;Manual Curation=June 11%2C 2018;Literature_PMID=29878383;Oryzabase=22481;Expression=AK065392;TENOR=Os06t0691800-01;KEGG=Os06t0691800-01;Subcellular location=plasma membrane (GO:0005886)
Chr06	irgsp1_rep	five_prime_UTR	28853373	28853500	.	+	.	Parent=Os06t0691800-01
Chr06	irgsp1_rep	CDS	28853501	28856701	.	+	0	Parent=Os06t0691800-01
Chr06	irgsp1_rep	three_prime_UTR	28856702	28856934	.	+	.	Parent=Os06t0691800-01
Chr06	irgsp1_rep	mRNA	28859220	28860578	.	-	.	ID=Os06t0691900-00;Name=Os06t0691900-00;Locus_id=Os06g0691900;Oryzabase Gene Symbol Synonym(s)=OsFbox324%2C Os_F0220;Oryzabase Gene Name Synonym(s)=F-box protein 324;Note=Similar to F-box domain containing protein.;Transcript_evidence=EU962397 (DDBJ);ORF_evidence=NP_001149196.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17101;TENOR=Os06t0691900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	28859220	28860578	.	-	0	Parent=Os06t0691900-00
Chr06	irgsp1_rep	mRNA	28864997	28865815	.	+	.	ID=Os06t0692050-00;Name=Os06t0692050-00;Locus_id=Os06g0692050;Note=Conserved hypothetical protein.;Transcript_evidence=FP100342 (DDBJ);ORF_evidence=Q5Z672 (UniProt);TENOR=Os06t0692050-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	28864997	28865290	.	+	0	Parent=Os06t0692050-00
Chr06	irgsp1_rep	three_prime_UTR	28865291	28865313	.	+	.	Parent=Os06t0692050-00
Chr06	irgsp1_rep	three_prime_UTR	28865497	28865815	.	+	.	Parent=Os06t0692050-00
Chr06	irgsp1_rep	mRNA	28867535	28870804	.	-	.	ID=Os06t0692100-01;Name=Os06t0692100-01;Locus_id=Os06g0692100;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK110293 (DDBJ%2C Best hit);ORF_evidence=A2YGH0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=002-163-G06;TENOR=Os06t0692100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	28870804	28870804	.	-	.	Parent=Os06t0692100-01
Chr06	irgsp1_rep	CDS	28867660	28870803	.	-	0	Parent=Os06t0692100-01
Chr06	irgsp1_rep	three_prime_UTR	28867535	28867659	.	-	.	Parent=Os06t0692100-01
Chr06	irgsp1_rep	mRNA	28874838	28878068	.	-	.	ID=Os06t0692300-00;Name=Os06t0692300-00;Locus_id=Os06g0692300;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5Z669 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os06t0692300-00;KEGG=Os06t0692300-00
Chr06	irgsp1_rep	CDS	28874838	28878068	.	-	0	Parent=Os06t0692300-00
Chr06	irgsp1_rep	mRNA	28888959	28892150	.	-	.	ID=Os06t0692500-00;Name=Os06t0692500-00;Locus_id=Os06g0692500;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5Z666 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os06t0692500-00;KEGG=Os06t0692500-00
Chr06	irgsp1_rep	CDS	28888959	28892150	.	-	0	Parent=Os06t0692500-00
Chr06	irgsp1_rep	mRNA	28898441	28901943	.	-	.	ID=Os06t0692600-01;Name=Os06t0692600-01;Locus_id=Os06g0692600;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK110462 (DDBJ%2C Best hit);ORF_evidence=B8B1U7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-166-F12;Expression=AK110462;TENOR=Os06t0692600-01;KEGG=Os06t0692600-01
Chr06	irgsp1_rep	five_prime_UTR	28901806	28901943	.	-	.	Parent=Os06t0692600-01
Chr06	irgsp1_rep	CDS	28898605	28901805	.	-	0	Parent=Os06t0692600-01
Chr06	irgsp1_rep	three_prime_UTR	28898441	28898604	.	-	.	Parent=Os06t0692600-01
Chr06	irgsp1_rep	mRNA	28905577	28909024	.	-	.	ID=Os06t0692700-01;Name=Os06t0692700-01;Locus_id=Os06g0692700;Note=Conserved hypothetical protein.;Transcript_evidence=AK101257 (DDBJ%2C Best hit);ORF_evidence=B9FQM7 (UniProt);NIAS_FLcDNA=J033032G23;TENOR=Os06t0692700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	28909020	28909024	.	-	.	Parent=Os06t0692700-01
Chr06	irgsp1_rep	CDS	28908841	28909019	.	-	0	Parent=Os06t0692700-01
Chr06	irgsp1_rep	CDS	28907878	28908064	.	-	1	Parent=Os06t0692700-01
Chr06	irgsp1_rep	three_prime_UTR	28905577	28907877	.	-	.	Parent=Os06t0692700-01
Chr06	irgsp1_rep	mRNA	28910275	28914727	.	-	.	ID=Os06t0692800-01;Name=Os06t0692800-01;Locus_id=Os06g0692800;Note=Protein of unknown function DUF547 domain containing protein.;Transcript_evidence=AK067440 (DDBJ%2C Best hit);ORF_evidence=Q3T5W0 (UniProt);InterPro=Domain of unknown function DUF547 (IPR006869);NIAS_FLcDNA=J013103L11;Expression=AK067440;TENOR=Os06t0692800-01;KEGG=Os06t0692800-01
Chr06	irgsp1_rep	five_prime_UTR	28914675	28914727	.	-	.	Parent=Os06t0692800-01
Chr06	irgsp1_rep	CDS	28914658	28914674	.	-	0	Parent=Os06t0692800-01
Chr06	irgsp1_rep	CDS	28914408	28914546	.	-	1	Parent=Os06t0692800-01
Chr06	irgsp1_rep	CDS	28913900	28913983	.	-	0	Parent=Os06t0692800-01
Chr06	irgsp1_rep	CDS	28913504	28913620	.	-	0	Parent=Os06t0692800-01
Chr06	irgsp1_rep	CDS	28913185	28913415	.	-	0	Parent=Os06t0692800-01
Chr06	irgsp1_rep	CDS	28912896	28913090	.	-	0	Parent=Os06t0692800-01
Chr06	irgsp1_rep	CDS	28912317	28912801	.	-	0	Parent=Os06t0692800-01
Chr06	irgsp1_rep	CDS	28911924	28912023	.	-	1	Parent=Os06t0692800-01
Chr06	irgsp1_rep	CDS	28911558	28911617	.	-	0	Parent=Os06t0692800-01
Chr06	irgsp1_rep	CDS	28911377	28911469	.	-	0	Parent=Os06t0692800-01
Chr06	irgsp1_rep	CDS	28911168	28911287	.	-	0	Parent=Os06t0692800-01
Chr06	irgsp1_rep	CDS	28910522	28910845	.	-	0	Parent=Os06t0692800-01
Chr06	irgsp1_rep	three_prime_UTR	28910275	28910521	.	-	.	Parent=Os06t0692800-01
Chr06	irgsp1_rep	mRNA	28910528	28913984	.	+	.	ID=Os06t0692900-00;Name=Os06t0692900-00;Locus_id=Os06g0692900;Note=Non-protein coding transcript.;Transcript_evidence=tplb0022i14 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os06t0692900-00
Chr06	irgsp1_rep	exon	28910528	28910847	.	+	.	Parent=Os06t0692900-00
Chr06	irgsp1_rep	exon	28911170	28911287	.	+	.	Parent=Os06t0692900-00
Chr06	irgsp1_rep	exon	28911377	28911481	.	+	.	Parent=Os06t0692900-00
Chr06	irgsp1_rep	exon	28911882	28912006	.	+	.	Parent=Os06t0692900-00
Chr06	irgsp1_rep	exon	28912301	28912801	.	+	.	Parent=Os06t0692900-00
Chr06	irgsp1_rep	exon	28912896	28913125	.	+	.	Parent=Os06t0692900-00
Chr06	irgsp1_rep	exon	28913268	28913453	.	+	.	Parent=Os06t0692900-00
Chr06	irgsp1_rep	exon	28913534	28913610	.	+	.	Parent=Os06t0692900-00
Chr06	irgsp1_rep	exon	28913893	28913984	.	+	.	Parent=Os06t0692900-00
Chr06	irgsp1_rep	mRNA	28918691	28923984	.	+	.	ID=Os06t0693000-01;Name=Os06t0693000-01;Locus_id=Os06g0693000;Oryzabase Gene Name Synonym(s)=Serine/threonine-specific protein kinase;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK064280 (DDBJ%2C Best hit);ORF_evidence=B8B1V0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-105-G03;Oryzabase=17706;Expression=AK064280;TENOR=Os06t0693000-01;KEGG=Os06t0693000-01
Chr06	irgsp1_rep	five_prime_UTR	28918691	28918718	.	+	.	Parent=Os06t0693000-01
Chr06	irgsp1_rep	CDS	28918719	28918780	.	+	0	Parent=Os06t0693000-01
Chr06	irgsp1_rep	CDS	28918841	28919147	.	+	1	Parent=Os06t0693000-01
Chr06	irgsp1_rep	CDS	28919499	28919551	.	+	0	Parent=Os06t0693000-01
Chr06	irgsp1_rep	CDS	28920007	28920092	.	+	1	Parent=Os06t0693000-01
Chr06	irgsp1_rep	CDS	28922193	28922374	.	+	2	Parent=Os06t0693000-01
Chr06	irgsp1_rep	CDS	28922452	28922653	.	+	0	Parent=Os06t0693000-01
Chr06	irgsp1_rep	CDS	28922894	28923125	.	+	2	Parent=Os06t0693000-01
Chr06	irgsp1_rep	CDS	28923213	28923366	.	+	1	Parent=Os06t0693000-01
Chr06	irgsp1_rep	CDS	28923445	28923789	.	+	0	Parent=Os06t0693000-01
Chr06	irgsp1_rep	three_prime_UTR	28923790	28923984	.	+	.	Parent=Os06t0693000-01
Chr06	irgsp1_rep	mRNA	28923433	28923782	.	-	.	ID=Os06t0693025-00;Name=Os06t0693025-00;Locus_id=Os06g0693025;Note=Non-protein coding transcript.;Transcript_evidence=EU941368 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0693025-00
Chr06	irgsp1_rep	exon	28923433	28923782	.	-	.	Parent=Os06t0693025-00
Chr06	irgsp1_rep	mRNA	28926197	28930066	.	-	.	ID=Os06t0693100-01;Name=Os06t0693100-01;Locus_id=Os06g0693100;Note=NB-ARC domain containing protein.;Transcript_evidence=AK099477 (DDBJ%2C Best hit);ORF_evidence=Q2QR01 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013025A03;Expression=AK099477;TENOR=Os06t0693100-01;KEGG=Os06t0693100-01
Chr06	irgsp1_rep	five_prime_UTR	28929998	28930066	.	-	.	Parent=Os06t0693100-01
Chr06	irgsp1_rep	five_prime_UTR	28929229	28929235	.	-	.	Parent=Os06t0693100-01
Chr06	irgsp1_rep	CDS	28927666	28929228	.	-	0	Parent=Os06t0693100-01
Chr06	irgsp1_rep	three_prime_UTR	28926748	28927665	.	-	.	Parent=Os06t0693100-01
Chr06	irgsp1_rep	three_prime_UTR	28926197	28926581	.	-	.	Parent=Os06t0693100-01
Chr06	irgsp1_rep	mRNA	28941271	28943703	.	+	.	ID=Os06t0693200-01;Name=Os06t0693200-01;Locus_id=Os06g0693200;CGSNL Gene Symbol=RLCK216;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 216;Oryzabase Gene Symbol Synonym(s)=OsRLCK216%2C OsRRK1%2C RRK1;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 216%2C Rop-interacting receptor-like kinase 1;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK105794 (DDBJ%2C Best hit);ORF_evidence=Q01KL6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-202-H11;Oryzabase=18912;Expression=AK105794;TENOR=Os06t0693200-01;KEGG=Os06t0693200-01
Chr06	irgsp1_rep	five_prime_UTR	28941271	28941507	.	+	.	Parent=Os06t0693200-01
Chr06	irgsp1_rep	CDS	28941508	28941976	.	+	0	Parent=Os06t0693200-01
Chr06	irgsp1_rep	CDS	28942079	28942239	.	+	2	Parent=Os06t0693200-01
Chr06	irgsp1_rep	CDS	28942503	28942582	.	+	0	Parent=Os06t0693200-01
Chr06	irgsp1_rep	CDS	28942668	28942803	.	+	1	Parent=Os06t0693200-01
Chr06	irgsp1_rep	CDS	28942892	28943041	.	+	0	Parent=Os06t0693200-01
Chr06	irgsp1_rep	CDS	28943370	28943552	.	+	0	Parent=Os06t0693200-01
Chr06	irgsp1_rep	three_prime_UTR	28943553	28943703	.	+	.	Parent=Os06t0693200-01
Chr06	irgsp1_rep	mRNA	28941348	28942411	.	+	.	ID=Os06t0693200-02;Name=Os06t0693200-02;Locus_id=Os06g0693200;CGSNL Gene Symbol=RLCK216;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 216;Oryzabase Gene Symbol Synonym(s)=OsRLCK216%2C OsRRK1%2C RRK1;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 216%2C Rop-interacting receptor-like kinase 1;Note=Hypothetical conserved gene.;Transcript_evidence=AK059727 (DDBJ%2C Best hit);ORF_evidence=Q01KL6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=006-201-C12;Oryzabase=18912;Expression=AK059727;TENOR=Os06t0693200-02;KEGG=Os06t0693200-02
Chr06	irgsp1_rep	five_prime_UTR	28941348	28941507	.	+	.	Parent=Os06t0693200-02
Chr06	irgsp1_rep	CDS	28941508	28942044	.	+	0	Parent=Os06t0693200-02
Chr06	irgsp1_rep	three_prime_UTR	28942045	28942411	.	+	.	Parent=Os06t0693200-02
Chr06	irgsp1_rep	mRNA	28946947	28950600	.	-	.	ID=Os06t0693300-01;Name=Os06t0693300-01;Locus_id=Os06g0693300;RAP-DB Gene Symbol Synonym(s)=RPA2C%2C RPA2c%2C OsRPA2c;RAP-DB Gene Name Synonym(s)=REPLICATION PROTEIN A 2C%2C Replication Protein A2c;CGSNL Gene Symbol=RPA2C;CGSNL Gene Name=REPLICATION PROTEIN A 2C;Oryzabase Gene Symbol Synonym(s)=RPA2c%2C OsRPA2c;Oryzabase Gene Name Synonym(s)=Replication Protein A2c;Note=Replication protein A2c%2C Reguration of meiotic crossover;Transcript_evidence=AK102353;ORF_evidence=Q5Z8L1;InterPro=Nucleic acid-binding%2C OB-fold (IPR012340),Replication protein A%2C C-terminal (IPR014892),Winged helix-turn-helix DNA-binding domain (IPR011991);NIAS_FLcDNA=J033091F07;Manual Curation=December 12%2C 2013;Literature_PMID=24122830;Oryzabase=15025;TENOR=Os06t0693300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	28950533	28950600	.	-	.	Parent=Os06t0693300-01
Chr06	irgsp1_rep	CDS	28950410	28950532	.	-	0	Parent=Os06t0693300-01
Chr06	irgsp1_rep	CDS	28950195	28950326	.	-	0	Parent=Os06t0693300-01
Chr06	irgsp1_rep	CDS	28950005	28950102	.	-	0	Parent=Os06t0693300-01
Chr06	irgsp1_rep	CDS	28949880	28949921	.	-	1	Parent=Os06t0693300-01
Chr06	irgsp1_rep	CDS	28949706	28949783	.	-	1	Parent=Os06t0693300-01
Chr06	irgsp1_rep	CDS	28948507	28948585	.	-	1	Parent=Os06t0693300-01
Chr06	irgsp1_rep	CDS	28947909	28948412	.	-	0	Parent=Os06t0693300-01
Chr06	irgsp1_rep	CDS	28947550	28947632	.	-	0	Parent=Os06t0693300-01
Chr06	irgsp1_rep	CDS	28947404	28947472	.	-	1	Parent=Os06t0693300-01
Chr06	irgsp1_rep	CDS	28947199	28947283	.	-	1	Parent=Os06t0693300-01
Chr06	irgsp1_rep	three_prime_UTR	28946947	28947198	.	-	.	Parent=Os06t0693300-01
Chr06	irgsp1_rep	mRNA	28950824	28953454	.	+	.	ID=Os06t0693400-01;Name=Os06t0693400-01;Locus_id=Os06g0693400;Note=Conserved hypothetical protein.;Transcript_evidence=AK106435 (DDBJ%2C Best hit);ORF_evidence=Q5Z8L0 (UniProt);NIAS_FLcDNA=002-103-C12;Expression=AK106435;TENOR=Os06t0693400-01;KEGG=Os06t0693400-01
Chr06	irgsp1_rep	five_prime_UTR	28950824	28950824	.	+	.	Parent=Os06t0693400-01
Chr06	irgsp1_rep	CDS	28950825	28950928	.	+	0	Parent=Os06t0693400-01
Chr06	irgsp1_rep	CDS	28952995	28953307	.	+	1	Parent=Os06t0693400-01
Chr06	irgsp1_rep	three_prime_UTR	28953308	28953454	.	+	.	Parent=Os06t0693400-01
Chr06	irgsp1_rep	mRNA	28954620	28957837	.	+	.	ID=Os06t0693500-01;Name=Os06t0693500-01;Locus_id=Os06g0693500;Note=Zinc finger%2C C2H2-like domain containing protein.;Transcript_evidence=AK103176 (DDBJ%2C Best hit);ORF_evidence=D9ZIU1 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J033121H12;Expression=AK103176;TENOR=Os06t0693500-01;KEGG=Os06t0693500-01
Chr06	irgsp1_rep	five_prime_UTR	28954620	28954783	.	+	.	Parent=Os06t0693500-01
Chr06	irgsp1_rep	CDS	28954784	28954888	.	+	0	Parent=Os06t0693500-01
Chr06	irgsp1_rep	CDS	28955761	28956309	.	+	0	Parent=Os06t0693500-01
Chr06	irgsp1_rep	CDS	28956402	28956571	.	+	0	Parent=Os06t0693500-01
Chr06	irgsp1_rep	CDS	28957107	28957322	.	+	1	Parent=Os06t0693500-01
Chr06	irgsp1_rep	CDS	28957440	28957599	.	+	1	Parent=Os06t0693500-01
Chr06	irgsp1_rep	three_prime_UTR	28957600	28957837	.	+	.	Parent=Os06t0693500-01
Chr06	irgsp1_rep	mRNA	28958626	28960418	.	+	.	ID=Os06t0693600-00;Name=Os06t0693600-00;Locus_id=Os06g0693600;Note=Conserved hypothetical protein.;Transcript_evidence=CT837593 (DDBJ%2C Best hit);ORF_evidence=Q5Z8K8 (UniProt);TENOR=Os06t0693600-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	28958626	28959354	.	+	.	Parent=Os06t0693600-00
Chr06	irgsp1_rep	five_prime_UTR	28959444	28959460	.	+	.	Parent=Os06t0693600-00
Chr06	irgsp1_rep	CDS	28959461	28959512	.	+	0	Parent=Os06t0693600-00
Chr06	irgsp1_rep	CDS	28959631	28959841	.	+	2	Parent=Os06t0693600-00
Chr06	irgsp1_rep	CDS	28959992	28960148	.	+	1	Parent=Os06t0693600-00
Chr06	irgsp1_rep	three_prime_UTR	28960149	28960418	.	+	.	Parent=Os06t0693600-00
Chr06	irgsp1_rep	mRNA	28962588	28965940	.	+	.	ID=Os06t0693700-01;Name=Os06t0693700-01;Locus_id=Os06g0693700;Oryzabase Gene Symbol Synonym(s)=OsSIDP366%2C SIDP366;Oryzabase Gene Name Synonym(s)=Stress induced DUF1644 protein 366;Note=Protein of unknown function DUF1644 family protein.;Transcript_evidence=AK065874 (DDBJ%2C Best hit);ORF_evidence=Q5Z8K6 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Protein of unknown function DUF1644 (IPR012866),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J013050J04;Oryzabase=19981;Expression=AK065874;TENOR=Os06t0693700-01;KEGG=Os06t0693700-01
Chr06	irgsp1_rep	five_prime_UTR	28962588	28962736	.	+	.	Parent=Os06t0693700-01
Chr06	irgsp1_rep	five_prime_UTR	28963604	28963658	.	+	.	Parent=Os06t0693700-01
Chr06	irgsp1_rep	CDS	28963659	28964587	.	+	0	Parent=Os06t0693700-01
Chr06	irgsp1_rep	CDS	28965209	28965230	.	+	1	Parent=Os06t0693700-01
Chr06	irgsp1_rep	three_prime_UTR	28965231	28965940	.	+	.	Parent=Os06t0693700-01
Chr06	irgsp1_rep	mRNA	28962589	28964732	.	+	.	ID=Os06t0693700-02;Name=Os06t0693700-02;Locus_id=Os06g0693700;Oryzabase Gene Symbol Synonym(s)=OsSIDP366%2C SIDP366;Oryzabase Gene Name Synonym(s)=Stress induced DUF1644 protein 366;Note=Similar to predicted protein.;Transcript_evidence=AK072507 (DDBJ%2C Best hit);ORF_evidence=A2YGI6 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Protein of unknown function DUF1644 (IPR012866),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J023125M06;Oryzabase=19981;Expression=AK072507;TENOR=Os06t0693700-02;KEGG=Os06t0693700-02
Chr06	irgsp1_rep	five_prime_UTR	28962589	28962736	.	+	.	Parent=Os06t0693700-02
Chr06	irgsp1_rep	five_prime_UTR	28963604	28963658	.	+	.	Parent=Os06t0693700-02
Chr06	irgsp1_rep	CDS	28963659	28964612	.	+	0	Parent=Os06t0693700-02
Chr06	irgsp1_rep	three_prime_UTR	28964613	28964732	.	+	.	Parent=Os06t0693700-02
Chr06	irgsp1_rep	mRNA	28962616	28964731	.	+	.	ID=Os06t0693700-03;Name=Os06t0693700-03;Locus_id=Os06g0693700;Oryzabase Gene Symbol Synonym(s)=OsSIDP366%2C SIDP366;Oryzabase Gene Name Synonym(s)=Stress induced DUF1644 protein 366;Note=Similar to predicted protein.;Transcript_evidence=AK104038 (DDBJ%2C Best hit);ORF_evidence=Q5Z8K6 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Protein of unknown function DUF1644 (IPR012866),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=001-021-F09;Oryzabase=19981;Expression=AK104038;TENOR=Os06t0693700-03;KEGG=Os06t0693700-03
Chr06	irgsp1_rep	five_prime_UTR	28962616	28962736	.	+	.	Parent=Os06t0693700-03
Chr06	irgsp1_rep	five_prime_UTR	28963604	28963658	.	+	.	Parent=Os06t0693700-03
Chr06	irgsp1_rep	CDS	28963659	28964612	.	+	0	Parent=Os06t0693700-03
Chr06	irgsp1_rep	three_prime_UTR	28964613	28964731	.	+	.	Parent=Os06t0693700-03
Chr06	irgsp1_rep	mRNA	28962638	28965454	.	+	.	ID=Os06t0693700-04;Name=Os06t0693700-04;Locus_id=Os06g0693700;Oryzabase Gene Symbol Synonym(s)=OsSIDP366%2C SIDP366;Oryzabase Gene Name Synonym(s)=Stress induced DUF1644 protein 366;Note=Protein of unknown function DUF1644 family protein.;Transcript_evidence=AK059140 (DDBJ%2C Best hit);ORF_evidence=Q5Z8K6 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Protein of unknown function DUF1644 (IPR012866),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=001-023-A03;Oryzabase=19981;Expression=AK059140;TENOR=Os06t0693700-04;KEGG=Os06t0693700-04
Chr06	irgsp1_rep	five_prime_UTR	28962638	28962736	.	+	.	Parent=Os06t0693700-04
Chr06	irgsp1_rep	five_prime_UTR	28963604	28963658	.	+	.	Parent=Os06t0693700-04
Chr06	irgsp1_rep	CDS	28963659	28964587	.	+	0	Parent=Os06t0693700-04
Chr06	irgsp1_rep	CDS	28965209	28965230	.	+	1	Parent=Os06t0693700-04
Chr06	irgsp1_rep	three_prime_UTR	28965231	28965454	.	+	.	Parent=Os06t0693700-04
Chr06	irgsp1_rep	mRNA	28966758	28967827	.	-	.	ID=Os06t0693800-00;Name=Os06t0693800-00;Locus_id=Os06g0693800;Note=Transcription factor IIS%2C N-terminal domain containing protein.;Transcript_evidence=BT069978 (DDBJ);ORF_evidence=Q5Z8K5 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Transcription factor IIS%2C N-terminal (IPR017923);TENOR=Os06t0693800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	28967625	28967827	.	-	.	Parent=Os06t0693800-00
Chr06	irgsp1_rep	CDS	28966758	28967624	.	-	0	Parent=Os06t0693800-00
Chr06	irgsp1_rep	mRNA	28967974	28969051	.	+	.	ID=Os06t0693900-00;Name=Os06t0693900-00;Locus_id=Os06g0693900;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK375508 (DDBJ);ORF_evidence=A2YGI8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os06t0693900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	28967974	28968840	.	+	0	Parent=Os06t0693900-00
Chr06	irgsp1_rep	three_prime_UTR	28968841	28969051	.	+	.	Parent=Os06t0693900-00
Chr06	irgsp1_rep	mRNA	28969545	28974541	.	-	.	ID=Os06t0694000-01;Name=Os06t0694000-01;Locus_id=Os06g0694000;RAP-DB Gene Symbol Synonym(s)=OsZTL2;RAP-DB Gene Name Synonym(s)=ZEITLUPE 2;CGSNL Gene Symbol=ZTL2;CGSNL Gene Name=ZEITLUPE 2;Oryzabase Gene Symbol Synonym(s)=OsZTL2%2C OsFbox325%2C Os_F0374%2C ZTL1;Oryzabase Gene Name Synonym(s)=F-box protein 325;Note=F-box protein with a LOV domain and consecutive Kelch repeats%2C Circadian clock associated-component;Transcript_evidence=AK111850;ORF_evidence=Q5Z8K3;GO=Molecular Function: protein binding (GO:0005515);InterPro=PAS domain superfamily (IPR035965),F-box-like domain superfamily (IPR036047),Kelch-type beta propeller (IPR015915),Galactose oxidase/kelch%2C beta-propeller (IPR011043),PAS domain (IPR000014),F-box domain (IPR001810),Kelch repeat type 2 (IPR011498);NIAS_FLcDNA=J023149B02;Manual Curation=October 17%2C 2017;Literature_PMID=17132630;Oryzabase=8824;Expression=AK111850;TENOR=Os06t0694000-01;KEGG=Os06t0694000-01
Chr06	irgsp1_rep	five_prime_UTR	28974348	28974541	.	-	.	Parent=Os06t0694000-01
Chr06	irgsp1_rep	CDS	28974064	28974347	.	-	0	Parent=Os06t0694000-01
Chr06	irgsp1_rep	CDS	28970018	28971626	.	-	1	Parent=Os06t0694000-01
Chr06	irgsp1_rep	three_prime_UTR	28969545	28970017	.	-	.	Parent=Os06t0694000-01
Chr06	irgsp1_rep	mRNA	28977492	28980795	.	+	.	ID=Os06t0694100-01;Name=Os06t0694100-01;Locus_id=Os06g0694100;Note=Similar to cDNA clone:J033051C12%2C full insert sequence.;Transcript_evidence=AK063936 (DDBJ%2C Best hit);ORF_evidence=B7EME2 (UniProt);InterPro=Protein of unknown function DUF2454 (IPR018870);NIAS_FLcDNA=001-123-D10;Expression=AK063936;TENOR=Os06t0694100-01;KEGG=Os06t0694100-01
Chr06	irgsp1_rep	five_prime_UTR	28977492	28977558	.	+	.	Parent=Os06t0694100-01
Chr06	irgsp1_rep	CDS	28977559	28978065	.	+	0	Parent=Os06t0694100-01
Chr06	irgsp1_rep	CDS	28978323	28978409	.	+	0	Parent=Os06t0694100-01
Chr06	irgsp1_rep	CDS	28978543	28978733	.	+	0	Parent=Os06t0694100-01
Chr06	irgsp1_rep	CDS	28979425	28979620	.	+	1	Parent=Os06t0694100-01
Chr06	irgsp1_rep	CDS	28979757	28979821	.	+	0	Parent=Os06t0694100-01
Chr06	irgsp1_rep	CDS	28979952	28980053	.	+	1	Parent=Os06t0694100-01
Chr06	irgsp1_rep	CDS	28980564	28980675	.	+	1	Parent=Os06t0694100-01
Chr06	irgsp1_rep	three_prime_UTR	28980676	28980795	.	+	.	Parent=Os06t0694100-01
Chr06	irgsp1_rep	mRNA	28977527	28980784	.	+	.	ID=Os06t0694100-02;Name=Os06t0694100-02;Locus_id=Os06g0694100;Note=Hypothetical conserved gene.;Transcript_evidence=AK073594 (DDBJ%2C Best hit);ORF_evidence=NP_565917.2 (RefSeq);InterPro=Protein of unknown function DUF2454 (IPR018870);NIAS_FLcDNA=J033051C12;Expression=AK073594;TENOR=Os06t0694100-02;KEGG=Os06t0694100-02
Chr06	irgsp1_rep	five_prime_UTR	28977527	28977558	.	+	.	Parent=Os06t0694100-02
Chr06	irgsp1_rep	CDS	28977559	28978065	.	+	0	Parent=Os06t0694100-02
Chr06	irgsp1_rep	CDS	28978323	28978409	.	+	0	Parent=Os06t0694100-02
Chr06	irgsp1_rep	CDS	28978543	28978680	.	+	0	Parent=Os06t0694100-02
Chr06	irgsp1_rep	CDS	28979425	28979430	.	+	0	Parent=Os06t0694100-02
Chr06	irgsp1_rep	three_prime_UTR	28979431	28980053	.	+	.	Parent=Os06t0694100-02
Chr06	irgsp1_rep	three_prime_UTR	28980564	28980784	.	+	.	Parent=Os06t0694100-02
Chr06	irgsp1_rep	mRNA	28981367	28983436	.	-	.	ID=Os06t0694200-01;Name=Os06t0694200-01;Locus_id=Os06g0694200;CGSNL Gene Symbol=GELP88;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 88;Oryzabase Gene Symbol Synonym(s)=OsGELP88;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 88;Note=Esterase%2C SGNH hydrolase-type domain containing protein.;Transcript_evidence=AK106962 (DDBJ%2C Best hit);ORF_evidence=E5FYJ7 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087),Esterase%2C SGNH hydrolase-type (IPR013830),Esterase%2C SGNH hydrolase-type%2C subgroup (IPR013831);NIAS_FLcDNA=002-119-F07;Oryzabase=11038;Expression=AK106962;TENOR=Os06t0694200-01;KEGG=Os06t0694200-01
Chr06	irgsp1_rep	five_prime_UTR	28983342	28983436	.	-	.	Parent=Os06t0694200-01
Chr06	irgsp1_rep	CDS	28983074	28983341	.	-	0	Parent=Os06t0694200-01
Chr06	irgsp1_rep	CDS	28982688	28982900	.	-	2	Parent=Os06t0694200-01
Chr06	irgsp1_rep	CDS	28982398	28982543	.	-	2	Parent=Os06t0694200-01
Chr06	irgsp1_rep	CDS	28981516	28982028	.	-	0	Parent=Os06t0694200-01
Chr06	irgsp1_rep	three_prime_UTR	28981367	28981515	.	-	.	Parent=Os06t0694200-01
Chr06	irgsp1_rep	mRNA	28985624	28987849	.	+	.	ID=Os06t0694300-00;Name=Os06t0694300-00;Locus_id=Os06g0694300;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=BT041933 (DDBJ);ORF_evidence=NP_001058441.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os06t0694300-00;KEGG=Os06t0694300-00
Chr06	irgsp1_rep	CDS	28985624	28987849	.	+	0	Parent=Os06t0694300-00
Chr06	irgsp1_rep	mRNA	28988077	28990325	.	-	.	ID=Os06t0694400-01;Name=Os06t0694400-01;Locus_id=Os06g0694400;Note=Conserved hypothetical protein.;Transcript_evidence=AK120261 (DDBJ%2C Best hit);ORF_evidence=B8B269 (UniProt);NIAS_FLcDNA=J013046J02;Expression=AK120261;TENOR=Os06t0694400-01;KEGG=Os06t0694400-01
Chr06	irgsp1_rep	five_prime_UTR	28989952	28990325	.	-	.	Parent=Os06t0694400-01
Chr06	irgsp1_rep	CDS	28989933	28989951	.	-	0	Parent=Os06t0694400-01
Chr06	irgsp1_rep	CDS	28989463	28989710	.	-	2	Parent=Os06t0694400-01
Chr06	irgsp1_rep	CDS	28988574	28989038	.	-	0	Parent=Os06t0694400-01
Chr06	irgsp1_rep	three_prime_UTR	28988077	28988573	.	-	.	Parent=Os06t0694400-01
Chr06	irgsp1_rep	mRNA	28988099	28990115	.	-	.	ID=Os06t0694400-02;Name=Os06t0694400-02;Locus_id=Os06g0694400;Note=Conserved hypothetical protein.;Transcript_evidence=AK065599 (DDBJ%2C Best hit);ORF_evidence=B8B269 (UniProt);NIAS_FLcDNA=J013028E09;Expression=AK065599;TENOR=Os06t0694400-02;KEGG=Os06t0694400-02
Chr06	irgsp1_rep	five_prime_UTR	28989952	28990115	.	-	.	Parent=Os06t0694400-02
Chr06	irgsp1_rep	CDS	28989933	28989951	.	-	0	Parent=Os06t0694400-02
Chr06	irgsp1_rep	CDS	28989463	28989710	.	-	2	Parent=Os06t0694400-02
Chr06	irgsp1_rep	CDS	28988574	28989038	.	-	0	Parent=Os06t0694400-02
Chr06	irgsp1_rep	three_prime_UTR	28988099	28988573	.	-	.	Parent=Os06t0694400-02
Chr06	irgsp1_rep	mRNA	28993796	28995022	.	+	.	ID=Os06t0694500-01;Name=Os06t0694500-01;Locus_id=Os06g0694500;CGSNL Gene Symbol=ISC13;CGSNL Gene Name=IRON-SULFUR CLUSTER PROTEIN 13;Oryzabase Gene Symbol Synonym(s)=OsISC13;Oryzabase Gene Name Synonym(s)=Iron-sulfur cluster protein 13;Note=Similar to Nitrogen fixation like protein.;Transcript_evidence=AK067484 (DDBJ%2C Best hit),AK103983 (DDBJ%2C Best hit);ORF_evidence=NP_001150793.1 (RefSeq);GO=Biological Process: iron-sulfur cluster assembly (GO:0016226),Molecular Function: iron ion binding (GO:0005506),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=NIF system FeS cluster assembly%2C NifU%2C C-terminal (IPR001075);NIAS_FLcDNA=J013108G13,001-017-F09;Oryzabase=13428;TENOR=Os06t0694500-01
Chr06	irgsp1_rep	five_prime_UTR	28993796	28993883	.	+	.	Parent=Os06t0694500-01
Chr06	irgsp1_rep	CDS	28993884	28993976	.	+	0	Parent=Os06t0694500-01
Chr06	irgsp1_rep	CDS	28994055	28994139	.	+	0	Parent=Os06t0694500-01
Chr06	irgsp1_rep	CDS	28994234	28994523	.	+	2	Parent=Os06t0694500-01
Chr06	irgsp1_rep	CDS	28994671	28994862	.	+	0	Parent=Os06t0694500-01
Chr06	irgsp1_rep	three_prime_UTR	28994863	28995022	.	+	.	Parent=Os06t0694500-01
Chr06	irgsp1_rep	mRNA	28995903	28997357	.	-	.	ID=Os06t0694600-00;Name=Os06t0694600-00;Locus_id=Os06g0694600;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001058444.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os06t0694600-00;KEGG=Os06t0694600-00
Chr06	irgsp1_rep	CDS	28995903	28997357	.	-	0	Parent=Os06t0694600-00
Chr06	irgsp1_rep	mRNA	29002279	29003541	.	-	.	ID=Os06t0694800-01;Name=Os06t0694800-01;Locus_id=Os06g0694800;Note=Protein of unknown function DUF1517 domain containing protein.;Transcript_evidence=AK070249 (DDBJ%2C Best hit);ORF_evidence=A2YGJ8 (UniProt);InterPro=Protein of unknown function DUF1517 (IPR010903);NIAS_FLcDNA=J023043D01;Expression=AK070249;TENOR=Os06t0694800-01;KEGG=Os06t0694800-01
Chr06	irgsp1_rep	five_prime_UTR	29003451	29003541	.	-	.	Parent=Os06t0694800-01
Chr06	irgsp1_rep	CDS	29003110	29003450	.	-	0	Parent=Os06t0694800-01
Chr06	irgsp1_rep	CDS	29002405	29002633	.	-	1	Parent=Os06t0694800-01
Chr06	irgsp1_rep	three_prime_UTR	29002279	29002404	.	-	.	Parent=Os06t0694800-01
Chr06	irgsp1_rep	mRNA	29010101	29010835	.	+	.	ID=Os06t0694900-01;Name=Os06t0694900-01;Locus_id=Os06g0694900;Note=Conserved hypothetical protein.;Transcript_evidence=AK107764 (DDBJ%2C Best hit);ORF_evidence=Q652P3 (UniProt);NIAS_FLcDNA=002-133-A12;TENOR=Os06t0694900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	29010101	29010147	.	+	.	Parent=Os06t0694900-01
Chr06	irgsp1_rep	CDS	29010148	29010396	.	+	0	Parent=Os06t0694900-01
Chr06	irgsp1_rep	three_prime_UTR	29010397	29010835	.	+	.	Parent=Os06t0694900-01
Chr06	irgsp1_rep	mRNA	29022609	29023252	.	-	.	ID=Os06t0695001-00;Name=Os06t0695001-00;Locus_id=Os06g0695001;Note=Hypothetical protein.;Transcript_evidence=EU942261 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0695001-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	29023249	29023252	.	-	.	Parent=Os06t0695001-00
Chr06	irgsp1_rep	CDS	29022876	29023248	.	-	0	Parent=Os06t0695001-00
Chr06	irgsp1_rep	CDS	29022742	29022791	.	-	2	Parent=Os06t0695001-00
Chr06	irgsp1_rep	three_prime_UTR	29022609	29022741	.	-	.	Parent=Os06t0695001-00
Chr06	irgsp1_rep	mRNA	29021739	29023459	.	+	.	ID=Os06t0695200-00;Name=Os06t0695200-00;Locus_id=Os06g0695200;Oryzabase Gene Symbol Synonym(s)=prx93;Oryzabase Gene Name Synonym(s)=class III peroxidase 93;Note=Similar to Peroxidase precursor (EC 1.11.1.7).;Transcript_evidence=AK243205 (DDBJ%2C Secondary hit);ORF_evidence=Q5U1K0 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);Oryzabase=14616;TENOR=Os06t0695200-00;KEGG=Os06t0695200-00 (EC:1.11.1.7)
Chr06	irgsp1_rep	five_prime_UTR	29021739	29021753	.	+	.	Parent=Os06t0695200-00
Chr06	irgsp1_rep	CDS	29021754	29022161	.	+	0	Parent=Os06t0695200-00
Chr06	irgsp1_rep	CDS	29022612	29022771	.	+	0	Parent=Os06t0695200-00
Chr06	irgsp1_rep	CDS	29022866	29023242	.	+	2	Parent=Os06t0695200-00
Chr06	irgsp1_rep	three_prime_UTR	29023243	29023389	.	+	.	Parent=Os06t0695200-00
Chr06	irgsp1_rep	three_prime_UTR	29023397	29023459	.	+	.	Parent=Os06t0695200-00
Chr06	irgsp1_rep	mRNA	29027003	29028476	.	-	.	ID=Os06t0695300-01;Name=Os06t0695300-01;Locus_id=Os06g0695300;Oryzabase Gene Symbol Synonym(s)=prx92;Oryzabase Gene Name Synonym(s)=class III peroxidase 92;Note=Haem peroxidase%2C plant/fungal/bacterial family protein.;Transcript_evidence=AK243205 (DDBJ%2C Best hit);ORF_evidence=Q5U1K0 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J100041I04;Oryzabase=14615;TENOR=Os06t0695300-01;KEGG=Os06t0695300-01
Chr06	irgsp1_rep	five_prime_UTR	29028406	29028476	.	-	.	Parent=Os06t0695300-01
Chr06	irgsp1_rep	CDS	29027998	29028405	.	-	0	Parent=Os06t0695300-01
Chr06	irgsp1_rep	CDS	29027694	29027853	.	-	0	Parent=Os06t0695300-01
Chr06	irgsp1_rep	CDS	29027223	29027599	.	-	2	Parent=Os06t0695300-01
Chr06	irgsp1_rep	three_prime_UTR	29027003	29027222	.	-	.	Parent=Os06t0695300-01
Chr06	irgsp1_rep	mRNA	29027158	29027856	.	+	.	ID=Os06t0695350-00;Name=Os06t0695350-00;Locus_id=Os06g0695350;Note=Hypothetical protein.;Transcript_evidence=EU942261 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0695350-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	29027158	29027216	.	+	.	Parent=Os06t0695350-00
Chr06	irgsp1_rep	CDS	29027217	29027555	.	+	0	Parent=Os06t0695350-00
Chr06	irgsp1_rep	CDS	29027621	29027743	.	+	0	Parent=Os06t0695350-00
Chr06	irgsp1_rep	three_prime_UTR	29027744	29027856	.	+	.	Parent=Os06t0695350-00
Chr06	irgsp1_rep	mRNA	29035686	29038182	.	+	.	ID=Os06t0695400-01;Name=Os06t0695400-01;Locus_id=Os06g0695400;Oryzabase Gene Symbol Synonym(s)=prx91;Oryzabase Gene Name Synonym(s)=class III peroxidase 91;Note=Haem peroxidase family protein.;Transcript_evidence=AK073198 (DDBJ%2C Best hit);ORF_evidence=Q5U1K2 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J033022I15;Oryzabase=14614;Expression=AK073198;TENOR=Os06t0695400-01;KEGG=Os06t0695400-01
Chr06	irgsp1_rep	five_prime_UTR	29035686	29035868	.	+	.	Parent=Os06t0695400-01
Chr06	irgsp1_rep	CDS	29035869	29036087	.	+	0	Parent=Os06t0695400-01
Chr06	irgsp1_rep	CDS	29036217	29036414	.	+	0	Parent=Os06t0695400-01
Chr06	irgsp1_rep	CDS	29037316	29037475	.	+	0	Parent=Os06t0695400-01
Chr06	irgsp1_rep	CDS	29037710	29038092	.	+	2	Parent=Os06t0695400-01
Chr06	irgsp1_rep	three_prime_UTR	29038093	29038182	.	+	.	Parent=Os06t0695400-01
Chr06	irgsp1_rep	mRNA	29051003	29053853	.	-	.	ID=Os06t0695451-00;Name=Os06t0695451-00;Locus_id=Os06g0695451;Note=Hypothetical protein.;Transcript_evidence=tplb0038a01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0695451-00
Chr06	irgsp1_rep	CDS	29053425	29053853	.	-	0	Parent=Os06t0695451-00
Chr06	irgsp1_rep	CDS	29052792	29052956	.	-	0	Parent=Os06t0695451-00
Chr06	irgsp1_rep	CDS	29051498	29051684	.	-	0	Parent=Os06t0695451-00
Chr06	irgsp1_rep	CDS	29051155	29051402	.	-	2	Parent=Os06t0695451-00
Chr06	irgsp1_rep	three_prime_UTR	29051003	29051154	.	-	.	Parent=Os06t0695451-00
Chr06	irgsp1_rep	mRNA	29051012	29054304	.	+	.	ID=Os06t0695500-01;Name=Os06t0695500-01;Locus_id=Os06g0695500;Oryzabase Gene Symbol Synonym(s)=prx90;Oryzabase Gene Name Synonym(s)=class III peroxidase 90;Note=Similar to Peroxidase 16 precursor (EC 1.11.1.7) (Atperox P16) (ATP22a).;Transcript_evidence=AK064918 (DDBJ%2C Best hit),AK104754 (DDBJ%2C Best hit);ORF_evidence=A7LBL0 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J013000M23,001-038-F11;Oryzabase=14613;TENOR=Os06t0695500-01
Chr06	irgsp1_rep	five_prime_UTR	29051012	29051163	.	+	.	Parent=Os06t0695500-01
Chr06	irgsp1_rep	CDS	29051164	29051403	.	+	0	Parent=Os06t0695500-01
Chr06	irgsp1_rep	CDS	29051499	29051690	.	+	0	Parent=Os06t0695500-01
Chr06	irgsp1_rep	CDS	29052798	29052963	.	+	0	Parent=Os06t0695500-01
Chr06	irgsp1_rep	CDS	29053438	29053853	.	+	2	Parent=Os06t0695500-01
Chr06	irgsp1_rep	three_prime_UTR	29053854	29054304	.	+	.	Parent=Os06t0695500-01
Chr06	irgsp1_rep	mRNA	29059705	29063780	.	-	.	ID=Os06t0695600-01;Name=Os06t0695600-01;Locus_id=Os06g0695600;RAP-DB Gene Symbol Synonym(s)=OsMAR1;RAP-DB Gene Name Synonym(s)=microtubule-associated RING finger protein 1;Oryzabase Gene Symbol Synonym(s)=OsRFP%2C OsMAR1%2C MAR1;Oryzabase Gene Name Synonym(s)=RING finger protein%2C microtubule-associated RING  nger protein 1;Note=RING E3 ligase%2C Negative regulator for salt-stress response;Transcript_evidence=AK066069;ORF_evidence=Q5Z8H4;InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841);NIAS_FLcDNA=J013058N02;Manual Curation=December 22%2C 2017;Literature_PMID=29260397;Oryzabase=21157;Expression=AK066069;TENOR=Os06t0695600-01;KEGG=Os06t0695600-01
Chr06	irgsp1_rep	five_prime_UTR	29063463	29063780	.	-	.	Parent=Os06t0695600-01
Chr06	irgsp1_rep	five_prime_UTR	29062643	29062704	.	-	.	Parent=Os06t0695600-01
Chr06	irgsp1_rep	CDS	29061365	29062642	.	-	0	Parent=Os06t0695600-01
Chr06	irgsp1_rep	CDS	29061157	29061207	.	-	0	Parent=Os06t0695600-01
Chr06	irgsp1_rep	CDS	29060967	29061065	.	-	0	Parent=Os06t0695600-01
Chr06	irgsp1_rep	CDS	29060672	29060830	.	-	0	Parent=Os06t0695600-01
Chr06	irgsp1_rep	CDS	29060231	29060383	.	-	0	Parent=Os06t0695600-01
Chr06	irgsp1_rep	three_prime_UTR	29059705	29060230	.	-	.	Parent=Os06t0695600-01
Chr06	irgsp1_rep	mRNA	29068772	29071754	.	+	.	ID=Os06t0695700-01;Name=Os06t0695700-01;Locus_id=Os06g0695700;Note=Calmodulin-binding%2C plant family protein.;Transcript_evidence=AK100512 (DDBJ%2C Best hit);ORF_evidence=A2YGK6 (UniProt);InterPro=Calmodulin-binding protein%2C plant (IPR012417);NIAS_FLcDNA=J023099O06;Expression=AK100512;TENOR=Os06t0695700-01;KEGG=Os06t0695700-01
Chr06	irgsp1_rep	five_prime_UTR	29068772	29068860	.	+	.	Parent=Os06t0695700-01
Chr06	irgsp1_rep	five_prime_UTR	29069546	29069563	.	+	.	Parent=Os06t0695700-01
Chr06	irgsp1_rep	CDS	29069564	29071372	.	+	0	Parent=Os06t0695700-01
Chr06	irgsp1_rep	three_prime_UTR	29071373	29071754	.	+	.	Parent=Os06t0695700-01
Chr06	irgsp1_rep	mRNA	29072361	29076031	.	-	.	ID=Os06t0695800-01;Name=Os06t0695800-01;Locus_id=Os06g0695800;CGSNL Gene Symbol=STAR1;CGSNL Gene Name=SENSITIVE TO ALUMINIUM RHIZOTOXICITY 1;Oryzabase Gene Symbol Synonym(s)=OsENA2%2C OsABCI12%2C ENA2%2C ABCI12%2C OsSTAR1%2C OsSATR1;Oryzabase Gene Name Synonym(s)=SENSITIVE TO AL RHIZOTOXICITY1%2C Efflux transporter of nicotianamine 2%2C ABC transporter superfamily ABCI subgroup member 12;Note=Phosphate transport system permease protein 1 domain containing protein.;Transcript_evidence=AK109450 (DDBJ%2C Best hit);ORF_evidence=Q0D9V6 (UniProt);GO=Biological Process: phosphate ion transmembrane transport (GO:0035435),Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: inorganic phosphate transmembrane transporter activity (GO:0005315),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),Phosphate transport system permease protein 1 (IPR005670),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=001-114-F08;Oryzabase=9267;TENOR=Os06t0695800-01
Chr06	irgsp1_rep	five_prime_UTR	29075830	29076031	.	-	.	Parent=Os06t0695800-01
Chr06	irgsp1_rep	CDS	29075574	29075829	.	-	0	Parent=Os06t0695800-01
Chr06	irgsp1_rep	CDS	29075133	29075477	.	-	2	Parent=Os06t0695800-01
Chr06	irgsp1_rep	CDS	29072998	29073186	.	-	2	Parent=Os06t0695800-01
Chr06	irgsp1_rep	CDS	29072650	29072900	.	-	2	Parent=Os06t0695800-01
Chr06	irgsp1_rep	three_prime_UTR	29072361	29072649	.	-	.	Parent=Os06t0695800-01
Chr06	irgsp1_rep	mRNA	29072361	29075775	.	-	.	ID=Os06t0695800-02;Name=Os06t0695800-02;Locus_id=Os06g0695800;RAP-DB Gene Symbol Synonym(s)=STAR1%2C OsENA2%2C OsABCI12;RAP-DB Gene Name Synonym(s)=SENSITIVE TO ALUMINIUM RHIZOTOXICITY 1%2C SENSITIVE TO AL RHIZOTOXICITY1%2C Efflux transporter of nicotianamine 2%2C ABC transporter superfamily;CGSNL Gene Symbol=STAR1;CGSNL Gene Name=SENSITIVE TO ALUMINIUM RHIZOTOXICITY 1;Oryzabase Gene Symbol Synonym(s)=OsENA2%2C OsABCI12%2C ENA2%2C ABCI12%2C OsSTAR1%2C OsSATR1;Oryzabase Gene Name Synonym(s)=SENSITIVE TO AL RHIZOTOXICITY1%2C Efflux transporter of nicotianamine 2%2C ABC transporter superfamily ABCI subgroup member 12;Note=Bacterial-type ATP binding cassette (ABC) transporter%2C Al tolerance;Transcript_evidence=AB253626 (Koshihikari),AK064089;ORF_evidence=Q0D9V6;GO=Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),ABC transporter-like (IPR003439),AAA+ ATPase domain (IPR003593),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=002-100-D02;Manual Curation=April 7%2C 2011;Literature_PMID=19880795,15857838,19244140;Oryzabase=9267;TENOR=Os06t0695800-02
Chr06	irgsp1_rep	five_prime_UTR	29075665	29075775	.	-	.	Parent=Os06t0695800-02
Chr06	irgsp1_rep	CDS	29075574	29075664	.	-	0	Parent=Os06t0695800-02
Chr06	irgsp1_rep	CDS	29075133	29075477	.	-	2	Parent=Os06t0695800-02
Chr06	irgsp1_rep	CDS	29072999	29073186	.	-	2	Parent=Os06t0695800-02
Chr06	irgsp1_rep	CDS	29072650	29072901	.	-	0	Parent=Os06t0695800-02
Chr06	irgsp1_rep	three_prime_UTR	29072361	29072649	.	-	.	Parent=Os06t0695800-02
Chr06	irgsp1_rep	mRNA	29078436	29080258	.	-	.	ID=Os06t0695900-01;Name=Os06t0695900-01;Locus_id=Os06g0695900;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=AK288726 (DDBJ%2C Best hit);ORF_evidence=Q5Z6H8 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J090063B12;TENOR=Os06t0695900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	29080258	29080258	.	-	.	Parent=Os06t0695900-01
Chr06	irgsp1_rep	CDS	29079058	29080257	.	-	0	Parent=Os06t0695900-01
Chr06	irgsp1_rep	three_prime_UTR	29078436	29079057	.	-	.	Parent=Os06t0695900-01
Chr06	irgsp1_rep	mRNA	29133106	29134569	.	+	.	ID=Os06t0696400-01;Name=Os06t0696400-01;Locus_id=Os06g0696400;CGSNL Gene Symbol=XTH11;CGSNL Gene Name=XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 11;Oryzabase Gene Symbol Synonym(s)=OsXTH11%2C XTR2%2C OsXTR2%2C Meri-5;Oryzabase Gene Name Synonym(s)=xyloglucan endotransglucosylase/hydrolase%2C xyloglucan endotransglucosylase 11%2C XET-related gene 2%2C xyloglucan endotransglucosylase/hydrolase 11;Note=Xyloglycan endo-transglycosylase precursor.;Transcript_evidence=AK104912 (DDBJ%2C Best hit),AK066125 (DDBJ%2C Best hit);ORF_evidence=Q56TP0 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: cellular glucan metabolic process (GO:0006073),Cellular Component: cell wall (GO:0005618),Cellular Component: apoplast (GO:0048046),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762);InterPro=Glycoside hydrolase%2C family 16 (IPR000757),Glycoside hydrolase%2C family 16%2C active site (IPR008263),Concanavalin A-like lectin/glucanase (IPR008985),Xyloglucan endo-transglycosylase%2C C-terminal (IPR010713),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Xyloglucan endotransglucosylase/hydrolase (IPR016455);NIAS_FLcDNA=001-047-C02,J013059H08;Oryzabase=6491;TENOR=Os06t0696400-01
Chr06	irgsp1_rep	five_prime_UTR	29133106	29133210	.	+	.	Parent=Os06t0696400-01
Chr06	irgsp1_rep	CDS	29133211	29133471	.	+	0	Parent=Os06t0696400-01
Chr06	irgsp1_rep	CDS	29133606	29133799	.	+	0	Parent=Os06t0696400-01
Chr06	irgsp1_rep	CDS	29133922	29134348	.	+	1	Parent=Os06t0696400-01
Chr06	irgsp1_rep	three_prime_UTR	29134349	29134569	.	+	.	Parent=Os06t0696400-01
Chr06	irgsp1_rep	mRNA	29133116	29134569	.	+	.	ID=Os06t0696400-02;Name=Os06t0696400-02;Locus_id=Os06g0696400;CGSNL Gene Symbol=XTH11;CGSNL Gene Name=XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 11;Oryzabase Gene Symbol Synonym(s)=OsXTH11%2C XTR2%2C OsXTR2%2C Meri-5;Oryzabase Gene Name Synonym(s)=xyloglucan endotransglucosylase/hydrolase%2C xyloglucan endotransglucosylase 11%2C XET-related gene 2%2C xyloglucan endotransglucosylase/hydrolase 11;Note=Similar to Endotransglucosylase/hydrolase XTH5.;Transcript_evidence=AK058291 (DDBJ%2C Best hit);ORF_evidence=Q56TP0 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: cellular glucan metabolic process (GO:0006073),Cellular Component: cell wall (GO:0005618),Cellular Component: apoplast (GO:0048046),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762);InterPro=Glycoside hydrolase%2C family 16 (IPR000757),Concanavalin A-like lectin/glucanase (IPR008985),Xyloglucan endo-transglycosylase%2C C-terminal (IPR010713),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320);NIAS_FLcDNA=001-013-E08;Oryzabase=6491;Expression=AK058291;TENOR=Os06t0696400-02;KEGG=Os06t0696400-02 (EC:2.4.1.207)
Chr06	irgsp1_rep	five_prime_UTR	29133116	29133210	.	+	.	Parent=Os06t0696400-02
Chr06	irgsp1_rep	CDS	29133211	29133413	.	+	0	Parent=Os06t0696400-02
Chr06	irgsp1_rep	CDS	29134234	29134348	.	+	1	Parent=Os06t0696400-02
Chr06	irgsp1_rep	three_prime_UTR	29134349	29134569	.	+	.	Parent=Os06t0696400-02
Chr06	irgsp1_rep	mRNA	29133325	29134479	.	-	.	ID=Os06t0696450-00;Name=Os06t0696450-00;Locus_id=Os06g0696450;Note=Hypothetical protein.;Transcript_evidence=BT019084 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0696450-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	29134240	29134479	.	-	.	Parent=Os06t0696450-00
Chr06	irgsp1_rep	CDS	29133903	29134239	.	-	0	Parent=Os06t0696450-00
Chr06	irgsp1_rep	CDS	29133606	29133778	.	-	2	Parent=Os06t0696450-00
Chr06	irgsp1_rep	CDS	29133325	29133471	.	-	0	Parent=Os06t0696450-00
Chr06	irgsp1_rep	mRNA	29137112	29138074	.	+	.	ID=Os06t0696500-01;Name=Os06t0696500-01;Locus_id=Os06g0696500;CGSNL Gene Symbol=XTH18;CGSNL Gene Name=XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 18;Oryzabase Gene Symbol Synonym(s)=OsXTH18;Oryzabase Gene Name Synonym(s)=xyloglucan endotransglucosylase/hydrolase%2C xyloglucan endotransglucosylase 18;Note=Similar to Xyloglycan endo-transglycosylase precursor.;Transcript_evidence=AK242544 (DDBJ%2C Best hit);ORF_evidence=NP_001058456.2 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 16 (IPR000757),Concanavalin A-like lectin/glucanase (IPR008985),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320);NIAS_FLcDNA=J080318F11;Oryzabase=6498;TENOR=Os06t0696500-01;KEGG=Os06t0696500-01 (EC:2.4.1.207)
Chr06	irgsp1_rep	five_prime_UTR	29137112	29137236	.	+	.	Parent=Os06t0696500-01
Chr06	irgsp1_rep	CDS	29137237	29137809	.	+	0	Parent=Os06t0696500-01
Chr06	irgsp1_rep	three_prime_UTR	29137810	29138074	.	+	.	Parent=Os06t0696500-01
Chr06	irgsp1_rep	mRNA	29138986	29139490	.	+	.	ID=Os06t0696566-01;Name=Os06t0696566-01;Locus_id=Os06g0696566;Note=Hypothetical conserved gene.;Transcript_evidence=AK287999 (DDBJ%2C Best hit);ORF_evidence=Q5Z6H1 (UniProt);GO=Biological Process: cellular glucan metabolic process (GO:0006073),Cellular Component: cell wall (GO:0005618),Cellular Component: apoplast (GO:0048046),Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762);InterPro=Concanavalin A-like lectin/glucanase (IPR008985),Xyloglucan endo-transglycosylase%2C C-terminal (IPR010713),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320);NIAS_FLcDNA=J075105I24;TENOR=Os06t0696566-01;KEGG=Os06t0696566-01
Chr06	irgsp1_rep	five_prime_UTR	29138986	29138986	.	+	.	Parent=Os06t0696566-01
Chr06	irgsp1_rep	CDS	29138987	29139250	.	+	0	Parent=Os06t0696566-01
Chr06	irgsp1_rep	three_prime_UTR	29139251	29139490	.	+	.	Parent=Os06t0696566-01
Chr06	irgsp1_rep	mRNA	29144888	29146522	.	+	.	ID=Os06t0696600-01;Name=Os06t0696600-01;Locus_id=Os06g0696600;CGSNL Gene Symbol=XTH12;CGSNL Gene Name=XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 12;Oryzabase Gene Symbol Synonym(s)=OsXTH12;Oryzabase Gene Name Synonym(s)=xyloglucan endotransglucosylase/hydrolase%2C xyloglucan endotransglucosylase 12;Note=Similar to Xyloglucan endo-transglycosylase homolog.;Transcript_evidence=AK105934 (DDBJ%2C Best hit);ORF_evidence=B1P1S7 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: cellular glucan metabolic process (GO:0006073),Cellular Component: cell wall (GO:0005618),Cellular Component: apoplast (GO:0048046),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762);InterPro=Glycoside hydrolase%2C family 16 (IPR000757),Glycoside hydrolase%2C family 16%2C active site (IPR008263),Beta-glucanase (IPR008264),Concanavalin A-like lectin/glucanase (IPR008985),Xyloglucan endo-transglycosylase%2C C-terminal (IPR010713),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Xyloglucan endotransglucosylase/hydrolase (IPR016455);NIAS_FLcDNA=001-205-B05;Oryzabase=6492;Expression=AK105934;TENOR=Os06t0696600-01;KEGG=Os06t0696600-01 (EC:2.4.1.207)
Chr06	irgsp1_rep	five_prime_UTR	29144888	29144963	.	+	.	Parent=Os06t0696600-01
Chr06	irgsp1_rep	CDS	29144964	29145251	.	+	0	Parent=Os06t0696600-01
Chr06	irgsp1_rep	CDS	29145342	29145535	.	+	0	Parent=Os06t0696600-01
Chr06	irgsp1_rep	CDS	29145980	29146364	.	+	1	Parent=Os06t0696600-01
Chr06	irgsp1_rep	three_prime_UTR	29146365	29146522	.	+	.	Parent=Os06t0696600-01
Chr06	irgsp1_rep	mRNA	29148487	29149398	.	-	.	ID=Os06t0696900-00;Name=Os06t0696900-00;Locus_id=Os06g0696900;Note=Similar to Protein LRP16.;Transcript_evidence=ab initio prediction;ORF_evidence=B6SKT6 (UniProt);InterPro=Appr-1-p processing (IPR002589);TENOR=Os06t0696900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	29149105	29149398	.	-	0	Parent=Os06t0696900-00
Chr06	irgsp1_rep	CDS	29148780	29148828	.	-	0	Parent=Os06t0696900-00
Chr06	irgsp1_rep	CDS	29148487	29148695	.	-	2	Parent=Os06t0696900-00
Chr06	irgsp1_rep	mRNA	29157244	29157883	.	-	.	ID=Os06t0697000-01;Name=Os06t0697000-01;Locus_id=Os06g0697000;CGSNL Gene Symbol=XTH10;CGSNL Gene Name=XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 10;Oryzabase Gene Symbol Synonym(s)=OsXTH10;Oryzabase Gene Name Synonym(s)=xyloglucan endotransglucosylase/hydrolase%2C xyloglucan endotransglucosylase 10;Note=Similar to Xyloglucan endo-transglucosylase/hydrolase 1.;Transcript_evidence=AK120345 (DDBJ%2C Best hit);ORF_evidence=E6Y1I8 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 16 (IPR000757),Glycoside hydrolase%2C family 16%2C active site (IPR008263),Beta-glucanase (IPR008264),Concanavalin A-like lectin/glucanase (IPR008985),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320);NIAS_FLcDNA=J013063H05;Oryzabase=6490;TENOR=Os06t0697000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	29157757	29157883	.	-	.	Parent=Os06t0697000-01
Chr06	irgsp1_rep	CDS	29157502	29157756	.	-	0	Parent=Os06t0697000-01
Chr06	irgsp1_rep	CDS	29157244	29157426	.	-	0	Parent=Os06t0697000-01
Chr06	irgsp1_rep	mRNA	29156457	29157874	.	-	.	ID=Os06t0697000-02;Name=Os06t0697000-02;Locus_id=Os06g0697000;CGSNL Gene Symbol=XTH10;CGSNL Gene Name=XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 10;Oryzabase Gene Symbol Synonym(s)=OsXTH10;Oryzabase Gene Name Synonym(s)=xyloglucan endotransglucosylase/hydrolase%2C xyloglucan endotransglucosylase 10;Note=Similar to Xyloglucan endo-transglucosylase/hydrolase 1.;Transcript_evidence=AK105513 (DDBJ%2C Best hit);ORF_evidence=E6Y1I8 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: cellular glucan metabolic process (GO:0006073),Cellular Component: cell wall (GO:0005618),Cellular Component: apoplast (GO:0048046),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762);InterPro=Glycoside hydrolase%2C family 16 (IPR000757),Glycoside hydrolase%2C family 16%2C active site (IPR008263),Concanavalin A-like lectin/glucanase (IPR008985),Xyloglucan endo-transglycosylase%2C C-terminal (IPR010713),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Xyloglucan endotransglucosylase/hydrolase (IPR016455);NIAS_FLcDNA=001-127-F01;Oryzabase=6490;TENOR=Os06t0697000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	29157757	29157874	.	-	.	Parent=Os06t0697000-02
Chr06	irgsp1_rep	CDS	29157502	29157756	.	-	0	Parent=Os06t0697000-02
Chr06	irgsp1_rep	CDS	29157233	29157426	.	-	0	Parent=Os06t0697000-02
Chr06	irgsp1_rep	CDS	29156719	29157142	.	-	1	Parent=Os06t0697000-02
Chr06	irgsp1_rep	three_prime_UTR	29156457	29156718	.	-	.	Parent=Os06t0697000-02
Chr06	irgsp1_rep	mRNA	29163800	29166676	.	+	.	ID=Os06t0697200-00;Name=Os06t0697200-00;Locus_id=Os06g0697200;Oryzabase Gene Symbol Synonym(s)=OsRH35B;Oryzabase Gene Name Synonym(s)=RNA helicase 35B;Note=DEAD-box protein abstrakt.;Transcript_evidence=AK366717 (DDBJ);ORF_evidence=NP_001147853.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026),Molecular Function: zinc ion binding (GO:0008270);InterPro=Helicase%2C C-terminal (IPR001650),Zinc finger%2C CCHC-type (IPR001878),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);Oryzabase=19145;TENOR=Os06t0697200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	29163800	29163833	.	+	.	Parent=Os06t0697200-00
Chr06	irgsp1_rep	CDS	29163834	29164825	.	+	0	Parent=Os06t0697200-00
Chr06	irgsp1_rep	CDS	29165718	29166585	.	+	1	Parent=Os06t0697200-00
Chr06	irgsp1_rep	three_prime_UTR	29166586	29166676	.	+	.	Parent=Os06t0697200-00
Chr06	irgsp1_rep	mRNA	29171334	29172170	.	+	.	ID=Os06t0697300-00;Name=Os06t0697300-00;Locus_id=Os06g0697300;Oryzabase Gene Symbol Synonym(s)=OsCLE603%2C CLE603;Oryzabase Gene Name Synonym(s)=CLV3/ESR-related 603%2C CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 603;Note=Orn/DAP/Arg decarboxylase 2 domain containing protein.;Transcript_evidence=AB332079 (DDBJ%2C Best hit);ORF_evidence=NP_001174973.1 (RefSeq);Oryzabase=14249;TENOR=Os06t0697300-00;KEGG=Os06t0697300-00
Chr06	irgsp1_rep	CDS	29171334	29171692	.	+	0	Parent=Os06t0697300-00
Chr06	irgsp1_rep	CDS	29172083	29172170	.	+	1	Parent=Os06t0697300-00
Chr06	irgsp1_rep	mRNA	29173235	29175519	.	-	.	ID=Os06t0697400-01;Name=Os06t0697400-01;Locus_id=Os06g0697400;Note=Similar to DNA-directed RNA polymerases I%2C II%2C and III 17.1 kDa polypeptide.;Transcript_evidence=AK068912 (DDBJ%2C Best hit);ORF_evidence=B6SRG8 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351);InterPro=RNA polymerase%2C Rpb8 (IPR005570),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=J023001I09;TENOR=Os06t0697400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	29175478	29175519	.	-	.	Parent=Os06t0697400-01
Chr06	irgsp1_rep	five_prime_UTR	29174965	29175257	.	-	.	Parent=Os06t0697400-01
Chr06	irgsp1_rep	CDS	29174779	29174964	.	-	0	Parent=Os06t0697400-01
Chr06	irgsp1_rep	CDS	29174313	29174438	.	-	0	Parent=Os06t0697400-01
Chr06	irgsp1_rep	three_prime_UTR	29173235	29174312	.	-	.	Parent=Os06t0697400-01
Chr06	irgsp1_rep	mRNA	29180264	29181822	.	+	.	ID=Os06t0697500-00;Name=Os06t0697500-00;Locus_id=Os06g0697500;Note=ATPase%2C AAA-type%2C core domain containing protein.;Transcript_evidence=BT060613 (DDBJ);ORF_evidence=NP_001149719.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);TENOR=Os06t0697500-00;KEGG=Os06t0697500-00
Chr06	irgsp1_rep	five_prime_UTR	29180264	29180295	.	+	.	Parent=Os06t0697500-00
Chr06	irgsp1_rep	CDS	29180296	29181822	.	+	0	Parent=Os06t0697500-00
Chr06	irgsp1_rep	mRNA	29184407	29186298	.	-	.	ID=Os06t0697600-01;Name=Os06t0697600-01;Locus_id=Os06g0697600;CGSNL Gene Name=AAA-ATPASE 3;Oryzabase Gene Name Synonym(s)=OsAAA-ATPase3%2C AAA-ATPase3;Note=ATPase%2C AAA-type%2C core domain containing protein.;Transcript_evidence=AK287436 (DDBJ%2C Best hit);ORF_evidence=NP_001149719.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);NIAS_FLcDNA=J043013G02;Oryzabase=23510;TENOR=Os06t0697600-01;KEGG=Os06t0697600-01
Chr06	irgsp1_rep	five_prime_UTR	29186122	29186298	.	-	.	Parent=Os06t0697600-01
Chr06	irgsp1_rep	CDS	29184607	29186121	.	-	0	Parent=Os06t0697600-01
Chr06	irgsp1_rep	three_prime_UTR	29184407	29184606	.	-	.	Parent=Os06t0697600-01
Chr06	irgsp1_rep	mRNA	29175691	29177069	.	+	.	ID=Os06t0698000-01;Name=Os06t0698000-01;Locus_id=Os06g0698000;Note=Hypothetical conserved gene.;Transcript_evidence=AK242699 (DDBJ%2C Best hit);ORF_evidence=B9FQP3 (UniProt);NIAS_FLcDNA=J090038M12;TENOR=Os06t0698000-01;KEGG=Os06t0698000-01
Chr06	irgsp1_rep	five_prime_UTR	29175691	29175692	.	+	.	Parent=Os06t0698000-01
Chr06	irgsp1_rep	CDS	29175693	29175836	.	+	0	Parent=Os06t0698000-01
Chr06	irgsp1_rep	CDS	29176880	29176948	.	+	0	Parent=Os06t0698000-01
Chr06	irgsp1_rep	three_prime_UTR	29176949	29177069	.	+	.	Parent=Os06t0698000-01
Chr06	irgsp1_rep	mRNA	29198270	29199356	.	-	.	ID=Os06t0698200-00;Name=Os06t0698200-00;Locus_id=Os06g0698200;CGSNL Gene Symbol=HOX18;CGSNL Gene Name=HOMEOBOX GENE 18;Oryzabase Gene Symbol Synonym(s)=Oshox18%2C OsHox18;Oryzabase Gene Name Synonym(s)=rice homeobox gene 18%2C Homeobox-leucine zipper protein HOX18%2C Homeodomain transcription factor HOX18%2C HD-ZIP protein HOX18;Note=Similar to Homeobox-leucine zipper protein HOX18.;Transcript_evidence=A2YGL9 (UniProt);ORF_evidence=A2YGL9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),Leucine zipper%2C homeobox-associated (IPR003106),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Homeobox%2C conserved site (IPR017970);Oryzabase=8454;TENOR=Os06t0698200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	29198940	29199356	.	-	0	Parent=Os06t0698200-00
Chr06	irgsp1_rep	CDS	29198642	29198721	.	-	0	Parent=Os06t0698200-00
Chr06	irgsp1_rep	CDS	29198270	29198543	.	-	1	Parent=Os06t0698200-00
Chr06	irgsp1_rep	mRNA	29208089	29210889	.	-	.	ID=Os06t0698300-01;Name=Os06t0698300-01;Locus_id=Os06g0698300;Oryzabase Gene Symbol Synonym(s)=OsPP2C59%2C PP2C59%2C OsPP91;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C59%2C protein phosphatase 2C 59%2C protein phosphatase 91;Note=Protein phosphatase 2C family protein.;Transcript_evidence=AK071637 (DDBJ%2C Best hit);ORF_evidence=A7L5U8 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J023101G03;Oryzabase=17932;Expression=AK071637;TENOR=Os06t0698300-01;KEGG=Os06t0698300-01
Chr06	irgsp1_rep	five_prime_UTR	29210772	29210889	.	-	.	Parent=Os06t0698300-01
Chr06	irgsp1_rep	CDS	29210719	29210771	.	-	0	Parent=Os06t0698300-01
Chr06	irgsp1_rep	CDS	29210181	29210308	.	-	1	Parent=Os06t0698300-01
Chr06	irgsp1_rep	CDS	29209967	29210065	.	-	2	Parent=Os06t0698300-01
Chr06	irgsp1_rep	CDS	29209702	29209860	.	-	2	Parent=Os06t0698300-01
Chr06	irgsp1_rep	CDS	29209394	29209480	.	-	2	Parent=Os06t0698300-01
Chr06	irgsp1_rep	CDS	29209183	29209274	.	-	2	Parent=Os06t0698300-01
Chr06	irgsp1_rep	CDS	29208950	29209024	.	-	0	Parent=Os06t0698300-01
Chr06	irgsp1_rep	CDS	29208389	29208559	.	-	0	Parent=Os06t0698300-01
Chr06	irgsp1_rep	three_prime_UTR	29208089	29208388	.	-	.	Parent=Os06t0698300-01
Chr06	irgsp1_rep	mRNA	29211627	29212504	.	+	.	ID=Os06t0698400-01;Name=Os06t0698400-01;Locus_id=Os06g0698400;Note=RNA recognition motif domain domain containing protein.;Transcript_evidence=AK108486 (DDBJ%2C Best hit);ORF_evidence=XP_002437521.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=002-143-F09;TENOR=Os06t0698400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	29211627	29211628	.	+	.	Parent=Os06t0698400-01
Chr06	irgsp1_rep	CDS	29211629	29212000	.	+	0	Parent=Os06t0698400-01
Chr06	irgsp1_rep	three_prime_UTR	29212001	29212504	.	+	.	Parent=Os06t0698400-01
Chr06	irgsp1_rep	mRNA	29215436	29218229	.	-	.	ID=Os06t0698500-01;Name=Os06t0698500-01;Locus_id=Os06g0698500;Note=Protein of unknown function DUF1336 domain containing protein.;Transcript_evidence=AK062416 (DDBJ%2C Best hit);ORF_evidence=B4F841 (UniProt);InterPro=Domain of unknown function DUF1336 (IPR009769);NIAS_FLcDNA=001-102-F07;Expression=AK062416;TENOR=Os06t0698500-01;KEGG=Os06t0698500-01
Chr06	irgsp1_rep	CDS	29217878	29218229	.	-	0	Parent=Os06t0698500-01
Chr06	irgsp1_rep	CDS	29215644	29215651	.	-	2	Parent=Os06t0698500-01
Chr06	irgsp1_rep	three_prime_UTR	29215436	29215643	.	-	.	Parent=Os06t0698500-01
Chr06	irgsp1_rep	mRNA	29231445	29233822	.	+	.	ID=Os06t0698600-01;Name=Os06t0698600-01;Locus_id=Os06g0698600;CGSNL Gene Symbol=EXO70G2;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN G2;Oryzabase Gene Symbol Synonym(s)=OsEXO70G2%2C OsExo70G2%2C OrysaG2_Exo70;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein G2;Note=Exo70 exocyst complex subunit family protein.;Transcript_evidence=AK243691 (DDBJ%2C Best hit);ORF_evidence=NP_194882.2 (RefSeq);GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exo70 exocyst complex subunit (IPR004140),Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=J100090P10;Oryzabase=20337;TENOR=Os06t0698600-01;KEGG=Os06t0698600-01
Chr06	irgsp1_rep	five_prime_UTR	29231445	29231464	.	+	.	Parent=Os06t0698600-01
Chr06	irgsp1_rep	CDS	29231465	29233456	.	+	0	Parent=Os06t0698600-01
Chr06	irgsp1_rep	three_prime_UTR	29233457	29233822	.	+	.	Parent=Os06t0698600-01
Chr06	irgsp1_rep	mRNA	29234952	29238556	.	-	.	ID=Os06t0698674-01;Name=Os06t0698674-01;Locus_id=Os06g0698674;Note=eIF4-gamma/eIF5/eIF2-epsilon domain containing protein.;Transcript_evidence=AK243382 (DDBJ%2C Best hit);ORF_evidence=B6T7C2 (UniProt);GO=Biological Process: translational initiation (GO:0006413),Biological Process: RNA metabolic process (GO:0016070),Molecular Function: translation initiation factor activity (GO:0003743),Molecular Function: binding (GO:0005488);InterPro=Translation initiation factor IF2/IF5 (IPR002735),eIF4-gamma/eIF5/eIF2-epsilon (IPR003307),MIF4-like%2C type 1/2/3 (IPR016021),Armadillo-type fold (IPR016024),Translation initiation factor IF2/IF5%2C N-terminal (IPR016189),Translation initiation factor IF2/IF5%2C zinc-binding (IPR016190);NIAS_FLcDNA=J100063D05;TENOR=Os06t0698674-01;KEGG=Os06t0698674-01
Chr06	irgsp1_rep	five_prime_UTR	29238441	29238556	.	-	.	Parent=Os06t0698674-01
Chr06	irgsp1_rep	five_prime_UTR	29236565	29236879	.	-	.	Parent=Os06t0698674-01
Chr06	irgsp1_rep	CDS	29235212	29236564	.	-	0	Parent=Os06t0698674-01
Chr06	irgsp1_rep	three_prime_UTR	29234952	29235211	.	-	.	Parent=Os06t0698674-01
Chr06	irgsp1_rep	mRNA	29235178	29236878	.	+	.	ID=Os06t0698686-00;Name=Os06t0698686-00;Locus_id=Os06g0698686;Note=Hypothetical protein.;Transcript_evidence=tplb0060f03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0698686-00
Chr06	irgsp1_rep	five_prime_UTR	29235178	29235344	.	+	.	Parent=Os06t0698686-00
Chr06	irgsp1_rep	CDS	29235345	29235605	.	+	0	Parent=Os06t0698686-00
Chr06	irgsp1_rep	three_prime_UTR	29235606	29235703	.	+	.	Parent=Os06t0698686-00
Chr06	irgsp1_rep	three_prime_UTR	29235763	29236641	.	+	.	Parent=Os06t0698686-00
Chr06	irgsp1_rep	three_prime_UTR	29236719	29236878	.	+	.	Parent=Os06t0698686-00
Chr06	irgsp1_rep	mRNA	29341909	29342600	.	-	.	ID=Os06t0698711-01;Name=Os06t0698711-01;Locus_id=Os06g0698711;Note=Conserved hypothetical protein.;Transcript_evidence=AK070810 (DDBJ%2C Best hit);ORF_evidence=B8B238 (UniProt);NIAS_FLcDNA=J023069M14;TENOR=Os06t0698711-01;KEGG=Os06t0698711-01
Chr06	irgsp1_rep	five_prime_UTR	29342410	29342600	.	-	.	Parent=Os06t0698711-01
Chr06	irgsp1_rep	CDS	29342134	29342409	.	-	0	Parent=Os06t0698711-01
Chr06	irgsp1_rep	three_prime_UTR	29341909	29342133	.	-	.	Parent=Os06t0698711-01
Chr06	irgsp1_rep	mRNA	29342111	29343523	.	+	.	ID=Os06t0698748-01;Name=Os06t0698748-01;Locus_id=Os06g0698748;CGSNL Gene Symbol=O3L7;CGSNL Gene Name=OXS3-LIKE 7;Oryzabase Gene Symbol Synonym(s)=OsO3L7;Oryzabase Gene Name Synonym(s)=OXIDATIVE STRESS 3-like 7%2C OXS3-like 7;Note=Similar to cDNA clone:J023083M02%2C full insert sequence.;Transcript_evidence=AK105781 (DDBJ%2C Best hit);ORF_evidence=B7EQC0 (UniProt);NIAS_FLcDNA=001-202-G04;Oryzabase=22450;TENOR=Os06t0698748-01;KEGG=Os06t0698748-01
Chr06	irgsp1_rep	five_prime_UTR	29342111	29342596	.	+	.	Parent=Os06t0698748-01
Chr06	irgsp1_rep	CDS	29342597	29343241	.	+	0	Parent=Os06t0698748-01
Chr06	irgsp1_rep	three_prime_UTR	29343242	29343523	.	+	.	Parent=Os06t0698748-01
Chr06	irgsp1_rep	mRNA	29342120	29343842	.	+	.	ID=Os06t0698748-02;Name=Os06t0698748-02;Locus_id=Os06g0698748;CGSNL Gene Symbol=O3L7;CGSNL Gene Name=OXS3-LIKE 7;Oryzabase Gene Symbol Synonym(s)=OsO3L7;Oryzabase Gene Name Synonym(s)=OXIDATIVE STRESS 3-like 7%2C OXS3-like 7;Note=Similar to MTD1.;Transcript_evidence=AK100361 (DDBJ%2C Best hit);ORF_evidence=NP_001148854.1 (RefSeq);NIAS_FLcDNA=J023083M02;Oryzabase=22450;TENOR=Os06t0698748-02;KEGG=Os06t0698748-02
Chr06	irgsp1_rep	five_prime_UTR	29342120	29342442	.	+	.	Parent=Os06t0698748-02
Chr06	irgsp1_rep	CDS	29342443	29342876	.	+	0	Parent=Os06t0698748-02
Chr06	irgsp1_rep	CDS	29342951	29343203	.	+	1	Parent=Os06t0698748-02
Chr06	irgsp1_rep	three_prime_UTR	29343204	29343842	.	+	.	Parent=Os06t0698748-02
Chr06	irgsp1_rep	mRNA	29347846	29352116	.	+	.	ID=Os06t0698785-01;Name=Os06t0698785-01;Locus_id=Os06g0698785;Oryzabase Gene Symbol Synonym(s)=OsCMO;Oryzabase Gene Name Synonym(s)=choline monooxygenase;Note=Similar to Choline monooxygenase.;Transcript_evidence=AK120445 (DDBJ%2C Best hit);ORF_evidence=Q7XB43 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=Rieske [2Fe-2S] iron-sulphur domain (IPR017941);NIAS_FLcDNA=J013099F05;Oryzabase=11500;TENOR=Os06t0698785-01;KEGG=Os06t0698785-01 (EC:1.14.15.7)
Chr06	irgsp1_rep	five_prime_UTR	29347846	29347907	.	+	.	Parent=Os06t0698785-01
Chr06	irgsp1_rep	CDS	29347908	29348252	.	+	0	Parent=Os06t0698785-01
Chr06	irgsp1_rep	three_prime_UTR	29348253	29349246	.	+	.	Parent=Os06t0698785-01
Chr06	irgsp1_rep	three_prime_UTR	29349708	29349782	.	+	.	Parent=Os06t0698785-01
Chr06	irgsp1_rep	three_prime_UTR	29349868	29350074	.	+	.	Parent=Os06t0698785-01
Chr06	irgsp1_rep	three_prime_UTR	29350184	29350279	.	+	.	Parent=Os06t0698785-01
Chr06	irgsp1_rep	three_prime_UTR	29350559	29350677	.	+	.	Parent=Os06t0698785-01
Chr06	irgsp1_rep	three_prime_UTR	29350775	29351379	.	+	.	Parent=Os06t0698785-01
Chr06	irgsp1_rep	three_prime_UTR	29351829	29352116	.	+	.	Parent=Os06t0698785-01
Chr06	irgsp1_rep	mRNA	29347847	29352146	.	+	.	ID=Os06t0698785-02;Name=Os06t0698785-02;Locus_id=Os06g0698785;RAP-DB Gene Symbol Synonym(s)=OsCMO;RAP-DB Gene Name Synonym(s)=choline monooxygenase;Oryzabase Gene Symbol Synonym(s)=OsCMO;Oryzabase Gene Name Synonym(s)=choline monooxygenase;Note=Choline monooxygenase%2C Response to salt stress;Transcript_evidence=AJ578494 (Jiu Caiqing),Inferred from literature;ORF_evidence=Q7XB43;GO=Biological Process: cellular metabolic process (GO:0044237),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=Rieske [2Fe-2S] iron-sulphur domain superfamily (IPR036922),Aromatic-ring-hydroxylating dioxygenase%2C alpha subunit (IPR001663),Rieske [2Fe-2S] iron-sulphur domain (IPR017941),Aromatic-ring-hydroxylating dioxygenase%2C alpha subunit%2C C-terminal domain (IPR015879);Manual Curation=August 6%2C 2020;Literature_PMID=22569963;Oryzabase=11500
Chr06	irgsp1_rep	five_prime_UTR	29347847	29347907	.	+	.	Parent=Os06t0698785-02
Chr06	irgsp1_rep	CDS	29347908	29348172	.	+	0	Parent=Os06t0698785-02
Chr06	irgsp1_rep	CDS	29348851	29348896	.	+	2	Parent=Os06t0698785-02
Chr06	irgsp1_rep	CDS	29349111	29349246	.	+	1	Parent=Os06t0698785-02
Chr06	irgsp1_rep	CDS	29349708	29349782	.	+	0	Parent=Os06t0698785-02
Chr06	irgsp1_rep	CDS	29349868	29350074	.	+	0	Parent=Os06t0698785-02
Chr06	irgsp1_rep	CDS	29350184	29350279	.	+	0	Parent=Os06t0698785-02
Chr06	irgsp1_rep	CDS	29350559	29350677	.	+	0	Parent=Os06t0698785-02
Chr06	irgsp1_rep	CDS	29350775	29350868	.	+	1	Parent=Os06t0698785-02
Chr06	irgsp1_rep	CDS	29351329	29351379	.	+	0	Parent=Os06t0698785-02
Chr06	irgsp1_rep	CDS	29351829	29351972	.	+	0	Parent=Os06t0698785-02
Chr06	irgsp1_rep	three_prime_UTR	29351973	29352146	.	+	.	Parent=Os06t0698785-02
Chr06	irgsp1_rep	mRNA	29350173	29353929	.	-	.	ID=Os06t0698802-01;Name=Os06t0698802-01;Locus_id=Os06g0698802;Note=Hypothetical conserved gene.;Transcript_evidence=AK288331 (DDBJ%2C Best hit);ORF_evidence=B9FQP9 (UniProt);NIAS_FLcDNA=J090022J21;Oryzabase=14957;TENOR=Os06t0698802-01;KEGG=Os06t0698802-01
Chr06	irgsp1_rep	five_prime_UTR	29353929	29353929	.	-	.	Parent=Os06t0698802-01
Chr06	irgsp1_rep	CDS	29353344	29353928	.	-	0	Parent=Os06t0698802-01
Chr06	irgsp1_rep	three_prime_UTR	29350173	29353343	.	-	.	Parent=Os06t0698802-01
Chr06	irgsp1_rep	mRNA	29355252	29356136	.	-	.	ID=Os06t0698812-00;Name=Os06t0698812-00;Locus_id=Os06g0698812;Note=Disease resistance protein domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=XP_002438943.1 (RefSeq);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);Oryzabase=14957;TENOR=Os06t0698812-00
Chr06	irgsp1_rep	CDS	29355252	29356136	.	-	0	Parent=Os06t0698812-00
Chr06	irgsp1_rep	mRNA	29355377	29357220	.	+	.	ID=Os06t0698822-01;Name=Os06t0698822-01;Locus_id=Os06g0698822;Note=Hypothetical protein.;Transcript_evidence=AK241532 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065172A05;TENOR=Os06t0698822-01;KEGG=Os06t0698822-01
Chr06	irgsp1_rep	five_prime_UTR	29355377	29355981	.	+	.	Parent=Os06t0698822-01
Chr06	irgsp1_rep	CDS	29355982	29356344	.	+	0	Parent=Os06t0698822-01
Chr06	irgsp1_rep	three_prime_UTR	29356345	29357220	.	+	.	Parent=Os06t0698822-01
Chr06	irgsp1_rep	mRNA	29357590	29364555	.	-	.	ID=Os06t0698859-01;Name=Os06t0698859-01;Locus_id=Os06g0698859;CGSNL Gene Symbol=DLN175;CGSNL Gene Name=DLN REPRESSOR 175;Oryzabase Gene Symbol Synonym(s)=OsDLN175;Oryzabase Gene Name Synonym(s)=DLN repressor 175%2C DLN motif protein 175;Note=Similar to C2H2 zinc-finger protein SERRATE (Fragment).;Transcript_evidence=AK120947 (DDBJ%2C Best hit);ORF_evidence=Q94FY3 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Arsenite-resistance protein 2 (IPR007042),Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880),Protein of unknown function DUF3546 (IPR021933);NIAS_FLcDNA=J023038B04;Oryzabase=23212;TENOR=Os06t0698859-01;KEGG=Os06t0698859-01
Chr06	irgsp1_rep	five_prime_UTR	29364445	29364555	.	-	.	Parent=Os06t0698859-01
Chr06	irgsp1_rep	CDS	29364014	29364444	.	-	0	Parent=Os06t0698859-01
Chr06	irgsp1_rep	CDS	29363820	29363905	.	-	1	Parent=Os06t0698859-01
Chr06	irgsp1_rep	CDS	29362970	29363024	.	-	2	Parent=Os06t0698859-01
Chr06	irgsp1_rep	CDS	29361032	29361106	.	-	1	Parent=Os06t0698859-01
Chr06	irgsp1_rep	CDS	29360882	29360956	.	-	1	Parent=Os06t0698859-01
Chr06	irgsp1_rep	CDS	29360747	29360794	.	-	1	Parent=Os06t0698859-01
Chr06	irgsp1_rep	CDS	29360343	29360411	.	-	1	Parent=Os06t0698859-01
Chr06	irgsp1_rep	CDS	29359474	29360265	.	-	1	Parent=Os06t0698859-01
Chr06	irgsp1_rep	CDS	29359347	29359395	.	-	1	Parent=Os06t0698859-01
Chr06	irgsp1_rep	CDS	29358473	29358708	.	-	0	Parent=Os06t0698859-01
Chr06	irgsp1_rep	CDS	29358193	29358387	.	-	1	Parent=Os06t0698859-01
Chr06	irgsp1_rep	CDS	29357847	29357907	.	-	1	Parent=Os06t0698859-01
Chr06	irgsp1_rep	three_prime_UTR	29357590	29357846	.	-	.	Parent=Os06t0698859-01
Chr06	irgsp1_rep	mRNA	29366039	29370366	.	-	.	ID=Os06t0698900-01;Name=Os06t0698900-01;Locus_id=Os06g0698900;CGSNL Gene Symbol=GATA20;CGSNL Gene Name=GATA TRANSCRIPTION FACTOR 20;Oryzabase Gene Symbol Synonym(s)=OsTIFY2b%2C TIFY2B%2C OsCCT24%2C OsGATA20;Oryzabase Gene Name Synonym(s)=TIFY GENE 2B%2C TIFY-DOMAIN PROTEIN 2B%2C CCT domain-containing gene 24%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 24%2C CCT domain protein 24%2C GATA transcription factor 20%2C GATA factor 20;Note=Similar to GATA transcription factor 25.;Transcript_evidence=AK243334 (DDBJ%2C Best hit);ORF_evidence=NP_001148559.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Zinc finger%2C GATA-type (IPR000679),Tify (IPR010399),CCT domain (IPR010402),Zinc finger%2C NHR/GATA-type (IPR013088);NIAS_FLcDNA=J100058P16;Oryzabase=15742;TENOR=Os06t0698900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	29370301	29370366	.	-	.	Parent=Os06t0698900-01
Chr06	irgsp1_rep	CDS	29370007	29370300	.	-	0	Parent=Os06t0698900-01
Chr06	irgsp1_rep	CDS	29369808	29369894	.	-	0	Parent=Os06t0698900-01
Chr06	irgsp1_rep	CDS	29369586	29369698	.	-	0	Parent=Os06t0698900-01
Chr06	irgsp1_rep	CDS	29368770	29368898	.	-	1	Parent=Os06t0698900-01
Chr06	irgsp1_rep	CDS	29368282	29368387	.	-	1	Parent=Os06t0698900-01
Chr06	irgsp1_rep	CDS	29367353	29367421	.	-	0	Parent=Os06t0698900-01
Chr06	irgsp1_rep	CDS	29366295	29366375	.	-	0	Parent=Os06t0698900-01
Chr06	irgsp1_rep	three_prime_UTR	29366039	29366294	.	-	.	Parent=Os06t0698900-01
Chr06	irgsp1_rep	mRNA	29381132	29382672	.	-	.	ID=Os06t0699050-00;Name=Os06t0699050-00;Locus_id=Os06g0699050;Note=Hypothetical protein.;Transcript_evidence=tplb0041e20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0699050-00
Chr06	irgsp1_rep	five_prime_UTR	29382514	29382672	.	-	.	Parent=Os06t0699050-00
Chr06	irgsp1_rep	CDS	29382232	29382513	.	-	0	Parent=Os06t0699050-00
Chr06	irgsp1_rep	three_prime_UTR	29381939	29382231	.	-	.	Parent=Os06t0699050-00
Chr06	irgsp1_rep	three_prime_UTR	29381132	29381741	.	-	.	Parent=Os06t0699050-00
Chr06	irgsp1_rep	mRNA	29381137	29382336	.	+	.	ID=Os06t0699100-00;Name=Os06t0699100-00;Locus_id=Os06g0699100;CGSNL Gene Symbol=AT20;CGSNL Gene Name=ACYLTRANSFERASE 20;Oryzabase Gene Symbol Synonym(s)=OsAT20%2C OsAt20;Oryzabase Gene Name Synonym(s)=acyltransferase 20;Note=Transferase domain containing protein.;Transcript_evidence=tplb0032h14 (Wheat FLcDNA);ORF_evidence=A2YGN1 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);Oryzabase=11752;TENOR=Os06t0699100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	29381137	29381792	.	+	0	Parent=Os06t0699100-00
Chr06	irgsp1_rep	CDS	29381984	29382014	.	+	1	Parent=Os06t0699100-00
Chr06	irgsp1_rep	three_prime_UTR	29382015	29382336	.	+	.	Parent=Os06t0699100-00
Chr06	irgsp1_rep	mRNA	29383237	29385814	.	-	.	ID=Os06t0699200-01;Name=Os06t0699200-01;Locus_id=Os06g0699200;Note=Metallophosphoesterase domain containing protein.;Transcript_evidence=AK243173 (DDBJ%2C Best hit);ORF_evidence=NP_001149077.1 (RefSeq);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Metallophosphoesterase domain (IPR004843),Phosphoesterase At2g46880 (IPR011230);NIAS_FLcDNA=J100035N11;TENOR=Os06t0699200-01;KEGG=Os06t0699200-01
Chr06	irgsp1_rep	five_prime_UTR	29385808	29385814	.	-	.	Parent=Os06t0699200-01
Chr06	irgsp1_rep	CDS	29385628	29385807	.	-	0	Parent=Os06t0699200-01
Chr06	irgsp1_rep	CDS	29385339	29385489	.	-	0	Parent=Os06t0699200-01
Chr06	irgsp1_rep	CDS	29384295	29384686	.	-	2	Parent=Os06t0699200-01
Chr06	irgsp1_rep	CDS	29383555	29383977	.	-	0	Parent=Os06t0699200-01
Chr06	irgsp1_rep	three_prime_UTR	29383237	29383554	.	-	.	Parent=Os06t0699200-01
Chr06	irgsp1_rep	mRNA	29386785	29387394	.	-	.	ID=Os06t0699301-00;Name=Os06t0699301-00;Locus_id=Os06g0699301;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001174980.1 (RefSeq);TENOR=Os06t0699301-00;KEGG=Os06t0699301-00
Chr06	irgsp1_rep	CDS	29387226	29387394	.	-	0	Parent=Os06t0699301-00
Chr06	irgsp1_rep	CDS	29386785	29387107	.	-	2	Parent=Os06t0699301-00
Chr06	irgsp1_rep	mRNA	29398386	29402535	.	+	.	ID=Os06t0699400-01;Name=Os06t0699400-01;Locus_id=Os06g0699400;RAP-DB Gene Symbol Synonym(s)=MAPK7%2C OsMAPK7%2C OsMPK7;RAP-DB Gene Name Synonym(s)=Mitogen-activated protein kinase 7;CGSNL Gene Symbol=MAPK4;CGSNL Gene Name=MITOGEN-ACTIVATED PROTEIN KINASE 4;Oryzabase Gene Symbol Synonym(s)=OsMAPK4%2C OsMAP2%2C OsMSRMK3%2C OsMPK4%2C OsMPK7%2C MAP2%2C MSRMK3%2C MPK4%2C MPK7%2C MAPK7%2C OsMAPK7;Oryzabase Gene Name Synonym(s)=Mitogen-activated protein kinase 4%2C MAP kinase 4%2C Multiple stress-responsive MAP kinase 3;Note=Mitogen-activated protein kinase%2C Regulation of seed dormancy%2C Disease resistance against X. oryzae;Transcript_evidence=AK071376;ORF_evidence=Q5Z859;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: MAP kinase activity (GO:0004707),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),Protein kinase domain (IPR000719),Protein kinase%2C ATP binding site (IPR017441),Mitogen-activated protein (MAP) kinase%2C conserved site (IPR003527),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J023093O04;Manual Curation=October 13%2C 2020;Literature_PMID=30671680,27897241;Oryzabase=6827;Expression=AK071376;TENOR=Os06t0699400-01;KEGG=Os06t0699400-01 (EC:2.7.11.24)
Chr06	irgsp1_rep	five_prime_UTR	29398386	29398569	.	+	.	Parent=Os06t0699400-01
Chr06	irgsp1_rep	five_prime_UTR	29399799	29399804	.	+	.	Parent=Os06t0699400-01
Chr06	irgsp1_rep	CDS	29399805	29400227	.	+	0	Parent=Os06t0699400-01
Chr06	irgsp1_rep	CDS	29401457	29402143	.	+	0	Parent=Os06t0699400-01
Chr06	irgsp1_rep	three_prime_UTR	29402144	29402535	.	+	.	Parent=Os06t0699400-01
Chr06	irgsp1_rep	mRNA	29402809	29403702	.	-	.	ID=Os06t0699500-01;Name=Os06t0699500-01;Locus_id=Os06g0699500;Note=Tautomerase domain containing protein.;Transcript_evidence=AK120103 (DDBJ%2C Best hit);ORF_evidence=NP_001150913.1 (RefSeq);InterPro=Macrophage migration inhibitory factor (IPR001398),Tautomerase (IPR014347);NIAS_FLcDNA=J013022N16;Expression=AK120103;TENOR=Os06t0699500-01;KEGG=Os06t0699500-01 (EC:5.3.2.1)
Chr06	irgsp1_rep	five_prime_UTR	29403611	29403702	.	-	.	Parent=Os06t0699500-01
Chr06	irgsp1_rep	CDS	29403500	29403610	.	-	0	Parent=Os06t0699500-01
Chr06	irgsp1_rep	CDS	29403183	29403383	.	-	0	Parent=Os06t0699500-01
Chr06	irgsp1_rep	CDS	29402935	29402970	.	-	0	Parent=Os06t0699500-01
Chr06	irgsp1_rep	three_prime_UTR	29402809	29402934	.	-	.	Parent=Os06t0699500-01
Chr06	irgsp1_rep	mRNA	29402750	29403671	.	-	.	ID=Os06t0699500-02;Name=Os06t0699500-02;Locus_id=Os06g0699500;Note=Tautomerase domain containing protein.;Transcript_evidence=AK062047 (DDBJ%2C Best hit);ORF_evidence=NP_001150913.1 (RefSeq);InterPro=Macrophage migration inhibitory factor (IPR001398),Tautomerase (IPR014347);NIAS_FLcDNA=001-044-A11;Expression=AK062047;TENOR=Os06t0699500-02;KEGG=Os06t0699500-02 (EC:5.3.2.1)
Chr06	irgsp1_rep	five_prime_UTR	29403611	29403671	.	-	.	Parent=Os06t0699500-02
Chr06	irgsp1_rep	CDS	29403500	29403610	.	-	0	Parent=Os06t0699500-02
Chr06	irgsp1_rep	CDS	29403183	29403383	.	-	0	Parent=Os06t0699500-02
Chr06	irgsp1_rep	CDS	29402935	29402970	.	-	0	Parent=Os06t0699500-02
Chr06	irgsp1_rep	three_prime_UTR	29402750	29402934	.	-	.	Parent=Os06t0699500-02
Chr06	irgsp1_rep	mRNA	29407744	29411786	.	+	.	ID=Os06t0699600-01;Name=Os06t0699600-01;Locus_id=Os06g0699600;Oryzabase Gene Symbol Synonym(s)=OsCCT25%2C OsCMF7;Oryzabase Gene Name Synonym(s)=CCT domain-containing gene 25%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 25%2C CCT domain protein 25%2C CCT MOTIF FAMILY (CMF) gene 7;Note=CCT domain containing protein.;Transcript_evidence=AK121295 (DDBJ%2C Best hit);ORF_evidence=B8B244 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=CCT domain (IPR010402);NIAS_FLcDNA=J023110D04;Oryzabase=19173;Expression=AK121295;TENOR=Os06t0699600-01;KEGG=Os06t0699600-01
Chr06	irgsp1_rep	five_prime_UTR	29407744	29408674	.	+	.	Parent=Os06t0699600-01
Chr06	irgsp1_rep	CDS	29408675	29409847	.	+	0	Parent=Os06t0699600-01
Chr06	irgsp1_rep	CDS	29410865	29411033	.	+	0	Parent=Os06t0699600-01
Chr06	irgsp1_rep	CDS	29411176	29411234	.	+	2	Parent=Os06t0699600-01
Chr06	irgsp1_rep	three_prime_UTR	29411235	29411786	.	+	.	Parent=Os06t0699600-01
Chr06	irgsp1_rep	mRNA	29417421	29418950	.	+	.	ID=Os06t0699700-01;Name=Os06t0699700-01;Locus_id=Os06g0699700;Oryzabase Gene Name Synonym(s)=Gln synthetase;Note=Similar to Aminodeoxychorismate synthase/glutamine amidotransferase.;Transcript_evidence=AK059492 (DDBJ%2C Best hit);ORF_evidence=A4UIY9 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Biological Process: folic acid-containing compound biosynthetic process (GO:0009396);InterPro=ADC synthase (IPR005801),Para-aminobenzoate synthase%2C component I (IPR005802),Chorismate binding%2C C-terminal (IPR015890),Anthranilate synthase component I (IPR019999);NIAS_FLcDNA=001-028-H02;Oryzabase=12468;Expression=AK059492;TENOR=Os06t0699700-01;KEGG=Os06t0699700-01
Chr06	irgsp1_rep	five_prime_UTR	29417421	29417421	.	+	.	Parent=Os06t0699700-01
Chr06	irgsp1_rep	CDS	29417422	29417884	.	+	0	Parent=Os06t0699700-01
Chr06	irgsp1_rep	CDS	29417982	29418517	.	+	2	Parent=Os06t0699700-01
Chr06	irgsp1_rep	three_prime_UTR	29418518	29418950	.	+	.	Parent=Os06t0699700-01
Chr06	irgsp1_rep	mRNA	29419754	29422725	.	+	.	ID=Os06t0699800-00;Name=Os06t0699800-00;Locus_id=Os06g0699800;Note=ENTH/VHS domain containing protein.;Transcript_evidence=EU969260 (DDBJ);ORF_evidence=Q5Z855 (UniProt);GO=Biological Process: clathrin coat assembly (GO:0048268),Cellular Component: clathrin coat (GO:0030118),Molecular Function: phospholipid binding (GO:0005543),Molecular Function: 1-phosphatidylinositol binding (GO:0005545),Molecular Function: clathrin binding (GO:0030276);InterPro=ENTH/VHS (IPR008942),ANTH (IPR011417),Epsin-like%2C N-terminal (IPR013809),Clathrin adaptor%2C phosphoinositide-binding%2C GAT-like (IPR014712);TENOR=Os06t0699800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	29419754	29420024	.	+	0	Parent=Os06t0699800-00
Chr06	irgsp1_rep	CDS	29420126	29420223	.	+	2	Parent=Os06t0699800-00
Chr06	irgsp1_rep	CDS	29420307	29420451	.	+	0	Parent=Os06t0699800-00
Chr06	irgsp1_rep	CDS	29420591	29420715	.	+	2	Parent=Os06t0699800-00
Chr06	irgsp1_rep	CDS	29420858	29420950	.	+	0	Parent=Os06t0699800-00
Chr06	irgsp1_rep	CDS	29421043	29421093	.	+	0	Parent=Os06t0699800-00
Chr06	irgsp1_rep	CDS	29421198	29421263	.	+	0	Parent=Os06t0699800-00
Chr06	irgsp1_rep	CDS	29421360	29421425	.	+	0	Parent=Os06t0699800-00
Chr06	irgsp1_rep	CDS	29421526	29421639	.	+	0	Parent=Os06t0699800-00
Chr06	irgsp1_rep	CDS	29421818	29422024	.	+	0	Parent=Os06t0699800-00
Chr06	irgsp1_rep	CDS	29422113	29422196	.	+	0	Parent=Os06t0699800-00
Chr06	irgsp1_rep	three_prime_UTR	29422197	29422294	.	+	.	Parent=Os06t0699800-00
Chr06	irgsp1_rep	three_prime_UTR	29422540	29422725	.	+	.	Parent=Os06t0699800-00
Chr06	irgsp1_rep	mRNA	29419835	29420197	.	-	.	ID=Os06t0699850-00;Name=Os06t0699850-00;Locus_id=Os06g0699850;Note=Hypothetical protein.;Transcript_evidence=EU975689 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0699850-00
Chr06	irgsp1_rep	five_prime_UTR	29420197	29420197	.	-	.	Parent=Os06t0699850-00
Chr06	irgsp1_rep	CDS	29419835	29420196	.	-	0	Parent=Os06t0699850-00
Chr06	irgsp1_rep	mRNA	29423376	29431536	.	-	.	ID=Os06t0699900-01;Name=Os06t0699900-01;Locus_id=Os06g0699900;CGSNL Gene Symbol=RPN1B;CGSNL Gene Name=19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 1B;Oryzabase Gene Symbol Synonym(s)=OsRpn1b%2C Rpn1b;Oryzabase Gene Name Synonym(s)=19S regulatory particle non-ATPase subunit 1b%2C RP non-ATPase 1b;Note=Proteasome/cyclosome%2C regulatory subunit domain containing protein.;Transcript_evidence=AK242770 (DDBJ%2C Best hit);ORF_evidence=XP_002884212.1 (RefSeq);GO=Biological Process: regulation of protein catabolic process (GO:0042176),Cellular Component: proteasome complex (GO:0000502),Molecular Function: binding (GO:0005488),Molecular Function: enzyme regulator activity (GO:0030234);InterPro=Proteasome/cyclosome%2C regulatory subunit (IPR002015),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),26S proteasome regulatory complex%2C non-ATPase subcomplex%2C Rpn1 subunit (IPR016643);NIAS_FLcDNA=J090053G05;Oryzabase=20561;TENOR=Os06t0699900-01;KEGG=Os06t0699900-01
Chr06	irgsp1_rep	five_prime_UTR	29431396	29431536	.	-	.	Parent=Os06t0699900-01
Chr06	irgsp1_rep	CDS	29431255	29431395	.	-	0	Parent=Os06t0699900-01
Chr06	irgsp1_rep	CDS	29431068	29431168	.	-	0	Parent=Os06t0699900-01
Chr06	irgsp1_rep	CDS	29430310	29430430	.	-	1	Parent=Os06t0699900-01
Chr06	irgsp1_rep	CDS	29430165	29430224	.	-	0	Parent=Os06t0699900-01
Chr06	irgsp1_rep	CDS	29429870	29429937	.	-	0	Parent=Os06t0699900-01
Chr06	irgsp1_rep	CDS	29429502	29429544	.	-	1	Parent=Os06t0699900-01
Chr06	irgsp1_rep	CDS	29428962	29429027	.	-	0	Parent=Os06t0699900-01
Chr06	irgsp1_rep	CDS	29428532	29428570	.	-	0	Parent=Os06t0699900-01
Chr06	irgsp1_rep	CDS	29428334	29428416	.	-	0	Parent=Os06t0699900-01
Chr06	irgsp1_rep	CDS	29428120	29428231	.	-	1	Parent=Os06t0699900-01
Chr06	irgsp1_rep	CDS	29427961	29428041	.	-	0	Parent=Os06t0699900-01
Chr06	irgsp1_rep	CDS	29427654	29427812	.	-	0	Parent=Os06t0699900-01
Chr06	irgsp1_rep	CDS	29427439	29427546	.	-	0	Parent=Os06t0699900-01
Chr06	irgsp1_rep	CDS	29427269	29427373	.	-	0	Parent=Os06t0699900-01
Chr06	irgsp1_rep	CDS	29427037	29427177	.	-	0	Parent=Os06t0699900-01
Chr06	irgsp1_rep	CDS	29426847	29426951	.	-	0	Parent=Os06t0699900-01
Chr06	irgsp1_rep	CDS	29426533	29426754	.	-	0	Parent=Os06t0699900-01
Chr06	irgsp1_rep	CDS	29425302	29425415	.	-	0	Parent=Os06t0699900-01
Chr06	irgsp1_rep	CDS	29424989	29425204	.	-	0	Parent=Os06t0699900-01
Chr06	irgsp1_rep	CDS	29424632	29424691	.	-	0	Parent=Os06t0699900-01
Chr06	irgsp1_rep	CDS	29424438	29424551	.	-	0	Parent=Os06t0699900-01
Chr06	irgsp1_rep	CDS	29424246	29424331	.	-	0	Parent=Os06t0699900-01
Chr06	irgsp1_rep	CDS	29424047	29424155	.	-	1	Parent=Os06t0699900-01
Chr06	irgsp1_rep	CDS	29423785	29423963	.	-	0	Parent=Os06t0699900-01
Chr06	irgsp1_rep	CDS	29423627	29423699	.	-	1	Parent=Os06t0699900-01
Chr06	irgsp1_rep	three_prime_UTR	29423376	29423626	.	-	.	Parent=Os06t0699900-01
Chr06	irgsp1_rep	mRNA	29434390	29441037	.	+	.	ID=Os06t0700000-01;Name=Os06t0700000-01;Locus_id=Os06g0700000;Oryzabase Gene Symbol Synonym(s)=OsSub52%2C SUB52;Oryzabase Gene Name Synonym(s)=Subtilisin 52%2C SUBTILISIN 52;Note=Peptidase S8%2C subtilisin-related domain containing protein.;Transcript_evidence=AK102835 (DDBJ%2C Best hit);ORF_evidence=B6SWW5 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Cellular Component: cell wall (GO:0005618),Cellular Component: membrane (GO:0016020),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Proteinase inhibitor%2C propeptide (IPR009020),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8A%2C DUF1034 C-terminal (IPR010435),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C  Asp-active site (IPR023827),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);NIAS_FLcDNA=J033109K01;Oryzabase=20136;Expression=AK102835;TENOR=Os06t0700000-01;KEGG=Os06t0700000-01
Chr06	irgsp1_rep	five_prime_UTR	29434390	29434651	.	+	.	Parent=Os06t0700000-01
Chr06	irgsp1_rep	five_prime_UTR	29435437	29435486	.	+	.	Parent=Os06t0700000-01
Chr06	irgsp1_rep	CDS	29435487	29435662	.	+	0	Parent=Os06t0700000-01
Chr06	irgsp1_rep	CDS	29436131	29436275	.	+	1	Parent=Os06t0700000-01
Chr06	irgsp1_rep	CDS	29436360	29436754	.	+	0	Parent=Os06t0700000-01
Chr06	irgsp1_rep	CDS	29436925	29437020	.	+	1	Parent=Os06t0700000-01
Chr06	irgsp1_rep	CDS	29437231	29437303	.	+	1	Parent=Os06t0700000-01
Chr06	irgsp1_rep	CDS	29437551	29437836	.	+	0	Parent=Os06t0700000-01
Chr06	irgsp1_rep	CDS	29438575	29438900	.	+	2	Parent=Os06t0700000-01
Chr06	irgsp1_rep	CDS	29439580	29439847	.	+	0	Parent=Os06t0700000-01
Chr06	irgsp1_rep	CDS	29440024	29440305	.	+	2	Parent=Os06t0700000-01
Chr06	irgsp1_rep	CDS	29440414	29440829	.	+	2	Parent=Os06t0700000-01
Chr06	irgsp1_rep	three_prime_UTR	29440830	29441037	.	+	.	Parent=Os06t0700000-01
Chr06	irgsp1_rep	mRNA	29441619	29444242	.	+	.	ID=Os06t0700100-01;Name=Os06t0700100-01;Locus_id=Os06g0700100;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK119443 (DDBJ%2C Best hit);ORF_evidence=A2YGP0 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-133-C07;Expression=AK119443;TENOR=Os06t0700100-01;KEGG=Os06t0700100-01
Chr06	irgsp1_rep	five_prime_UTR	29441619	29441666	.	+	.	Parent=Os06t0700100-01
Chr06	irgsp1_rep	CDS	29441667	29443097	.	+	0	Parent=Os06t0700100-01
Chr06	irgsp1_rep	three_prime_UTR	29443098	29444242	.	+	.	Parent=Os06t0700100-01
Chr06	irgsp1_rep	mRNA	29446652	29447535	.	-	.	ID=Os06t0700300-01;Name=Os06t0700300-01;Locus_id=Os06g0700300;Note=Conserved hypothetical protein.;Transcript_evidence=AK099967 (DDBJ%2C Best hit);ORF_evidence=A2YGP2 (UniProt);NIAS_FLcDNA=J013127D12;Expression=AK099967;TENOR=Os06t0700300-01;KEGG=Os06t0700300-01
Chr06	irgsp1_rep	five_prime_UTR	29447442	29447535	.	-	.	Parent=Os06t0700300-01
Chr06	irgsp1_rep	CDS	29446860	29447441	.	-	0	Parent=Os06t0700300-01
Chr06	irgsp1_rep	three_prime_UTR	29446652	29446859	.	-	.	Parent=Os06t0700300-01
Chr06	irgsp1_rep	mRNA	29462562	29467266	.	-	.	ID=Os06t0700500-01;Name=Os06t0700500-01;Locus_id=Os06g0700500;Note=Protein of unknown function DUF266%2C plant family protein.;Transcript_evidence=AK072266 (DDBJ%2C Best hit);ORF_evidence=Q01KD8 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: acetylglucosaminyltransferase activity (GO:0008375);InterPro=Glycosyl transferase%2C family 14 (IPR003406);NIAS_FLcDNA=J023006H21;Expression=AK072266;TENOR=Os06t0700500-01;KEGG=Os06t0700500-01
Chr06	irgsp1_rep	five_prime_UTR	29467118	29467266	.	-	.	Parent=Os06t0700500-01
Chr06	irgsp1_rep	five_prime_UTR	29465856	29465977	.	-	.	Parent=Os06t0700500-01
Chr06	irgsp1_rep	CDS	29465532	29465855	.	-	0	Parent=Os06t0700500-01
Chr06	irgsp1_rep	CDS	29465184	29465282	.	-	0	Parent=Os06t0700500-01
Chr06	irgsp1_rep	CDS	29464704	29464804	.	-	0	Parent=Os06t0700500-01
Chr06	irgsp1_rep	CDS	29464558	29464629	.	-	1	Parent=Os06t0700500-01
Chr06	irgsp1_rep	CDS	29464310	29464400	.	-	1	Parent=Os06t0700500-01
Chr06	irgsp1_rep	CDS	29464036	29464116	.	-	0	Parent=Os06t0700500-01
Chr06	irgsp1_rep	CDS	29463506	29463565	.	-	0	Parent=Os06t0700500-01
Chr06	irgsp1_rep	CDS	29463300	29463422	.	-	0	Parent=Os06t0700500-01
Chr06	irgsp1_rep	CDS	29463135	29463173	.	-	0	Parent=Os06t0700500-01
Chr06	irgsp1_rep	CDS	29462743	29462871	.	-	0	Parent=Os06t0700500-01
Chr06	irgsp1_rep	three_prime_UTR	29462562	29462742	.	-	.	Parent=Os06t0700500-01
Chr06	irgsp1_rep	mRNA	29462543	29465909	.	-	.	ID=Os06t0700500-02;Name=Os06t0700500-02;Locus_id=Os06g0700500;Note=Protein of unknown function DUF266%2C plant family protein.;Transcript_evidence=AK104088 (DDBJ%2C Best hit);ORF_evidence=B7EKK3 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: acetylglucosaminyltransferase activity (GO:0008375);InterPro=Glycosyl transferase%2C family 14 (IPR003406);NIAS_FLcDNA=001-030-D06;Expression=AK104088;TENOR=Os06t0700500-02;KEGG=Os06t0700500-02
Chr06	irgsp1_rep	five_prime_UTR	29465856	29465909	.	-	.	Parent=Os06t0700500-02
Chr06	irgsp1_rep	CDS	29465532	29465855	.	-	0	Parent=Os06t0700500-02
Chr06	irgsp1_rep	CDS	29465184	29465282	.	-	0	Parent=Os06t0700500-02
Chr06	irgsp1_rep	CDS	29464704	29464804	.	-	0	Parent=Os06t0700500-02
Chr06	irgsp1_rep	CDS	29464558	29464629	.	-	1	Parent=Os06t0700500-02
Chr06	irgsp1_rep	CDS	29464310	29464400	.	-	1	Parent=Os06t0700500-02
Chr06	irgsp1_rep	CDS	29464036	29464116	.	-	0	Parent=Os06t0700500-02
Chr06	irgsp1_rep	CDS	29463506	29463565	.	-	0	Parent=Os06t0700500-02
Chr06	irgsp1_rep	CDS	29463300	29463422	.	-	0	Parent=Os06t0700500-02
Chr06	irgsp1_rep	CDS	29463135	29463173	.	-	0	Parent=Os06t0700500-02
Chr06	irgsp1_rep	CDS	29462743	29462871	.	-	0	Parent=Os06t0700500-02
Chr06	irgsp1_rep	three_prime_UTR	29462543	29462742	.	-	.	Parent=Os06t0700500-02
Chr06	irgsp1_rep	mRNA	29473627	29474564	.	+	.	ID=Os06t0700550-00;Name=Os06t0700550-00;Locus_id=Os06g0700550;Note=Hypothetical protein.;Transcript_evidence=BT019288 (DDBJ);ORF_evidence=GeneMark;TENOR=Os06t0700550-00
Chr06	irgsp1_rep	five_prime_UTR	29473627	29473911	.	+	.	Parent=Os06t0700550-00
Chr06	irgsp1_rep	CDS	29473912	29474564	.	+	0	Parent=Os06t0700550-00
Chr06	irgsp1_rep	mRNA	29475710	29477531	.	+	.	ID=Os06t0700601-00;Name=Os06t0700601-00;Locus_id=Os06g0700601;Note=Hypothetical gene.;Transcript_evidence=BT085432 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0700601-00;KEGG=Os06t0700601-00
Chr06	irgsp1_rep	five_prime_UTR	29475710	29475929	.	+	.	Parent=Os06t0700601-00
Chr06	irgsp1_rep	five_prime_UTR	29476001	29476331	.	+	.	Parent=Os06t0700601-00
Chr06	irgsp1_rep	five_prime_UTR	29476428	29476543	.	+	.	Parent=Os06t0700601-00
Chr06	irgsp1_rep	five_prime_UTR	29476651	29476670	.	+	.	Parent=Os06t0700601-00
Chr06	irgsp1_rep	CDS	29476671	29476916	.	+	0	Parent=Os06t0700601-00
Chr06	irgsp1_rep	CDS	29477428	29477502	.	+	0	Parent=Os06t0700601-00
Chr06	irgsp1_rep	three_prime_UTR	29477503	29477531	.	+	.	Parent=Os06t0700601-00
Chr06	irgsp1_rep	mRNA	29477949	29480905	.	-	.	ID=Os06t0700700-01;Name=Os06t0700700-01;Locus_id=Os06g0700700;CGSNL Gene Symbol=HMA2;CGSNL Gene Name=HEAVY METAL ATPASE 2;Oryzabase Gene Symbol Synonym(s)=OsHMA2%2C osHMA2%2C OsHMA2v;Oryzabase Gene Name Synonym(s)=heavy metal ATPase 2%2C heavy metal transporter 2%2C heavy metal P-Type ATPase 2%2C heavy metal P1B-ATPase 2%2C Zn/ Cd-transporting ATPase 2;Note=Similar to P1B-type heavy metal transporting ATPase.;Transcript_evidence=AK107235 (DDBJ%2C Best hit);ORF_evidence=E7EC32 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);NIAS_FLcDNA=002-125-E11;Oryzabase=9914;Expression=AK107235;TENOR=Os06t0700700-01;KEGG=Os06t0700700-01 (EC:3.6.3.3%2C EC:3.6.3.5)
Chr06	irgsp1_rep	five_prime_UTR	29480717	29480905	.	-	.	Parent=Os06t0700700-01
Chr06	irgsp1_rep	five_prime_UTR	29480486	29480539	.	-	.	Parent=Os06t0700700-01
Chr06	irgsp1_rep	CDS	29480296	29480485	.	-	0	Parent=Os06t0700700-01
Chr06	irgsp1_rep	CDS	29478988	29479268	.	-	2	Parent=Os06t0700700-01
Chr06	irgsp1_rep	three_prime_UTR	29477949	29478987	.	-	.	Parent=Os06t0700700-01
Chr06	irgsp1_rep	mRNA	29473630	29480485	.	-	.	ID=Os06t0700700-02;Name=Os06t0700700-02;Locus_id=Os06g0700700;RAP-DB Gene Symbol Synonym(s)=HMA2%2C OsHMA2%2C osHMA2;RAP-DB Gene Name Synonym(s)=HEAVY METAL ATPASE 2%2C heavy metal ATPase 2%2C heavy metal transporter 2%2C heavy metal P-Type ATPase 2;CGSNL Gene Symbol=HMA2;CGSNL Gene Name=HEAVY METAL ATPASE 2;Oryzabase Gene Symbol Synonym(s)=OsHMA2%2C osHMA2%2C OsHMA2v;Oryzabase Gene Name Synonym(s)=heavy metal ATPase 2%2C heavy metal transporter 2%2C heavy metal P-Type ATPase 2%2C heavy metal P1B-ATPase 2%2C Zn/ Cd-transporting ATPase 2;Note=P-Type heavy metal ATPase%2C Delivery of Zinc to developing tissues;Transcript_evidence=AB697186;ORF_evidence=A3BF39;GO=Biological Process: cation transport (GO:0006812),Biological Process: metal ion transport (GO:0030001),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: cation-transporting ATPase activity (GO:0019829),Molecular Function: metal ion binding (GO:0046872),Cellular Component: integral component of membrane (GO:0016021);InterPro=Cation-transporting P-type ATPase (IPR001757),Cation-transporting P-type ATPase%2C subfamily IB (IPR027256),Heavy metal-associated domain%2C HMA (IPR006121),P-type ATPase%2C A  domain (IPR008250),HAD-like domain (IPR023214),P-type ATPase%2C cytoplasmic domain N (IPR023299),P-type ATPase%2C phosphorylation site (IPR018303);Manual Curation=March 7%2C 2014;Literature_PMID=23575418;Oryzabase=9914
Chr06	irgsp1_rep	CDS	29480296	29480485	.	-	0	Parent=Os06t0700700-02
Chr06	irgsp1_rep	CDS	29479005	29479268	.	-	2	Parent=Os06t0700700-02
Chr06	irgsp1_rep	CDS	29477429	29477527	.	-	2	Parent=Os06t0700700-02
Chr06	irgsp1_rep	CDS	29476664	29476920	.	-	2	Parent=Os06t0700700-02
Chr06	irgsp1_rep	CDS	29476425	29476560	.	-	0	Parent=Os06t0700700-02
Chr06	irgsp1_rep	CDS	29475997	29476325	.	-	2	Parent=Os06t0700700-02
Chr06	irgsp1_rep	CDS	29475725	29475926	.	-	0	Parent=Os06t0700700-02
Chr06	irgsp1_rep	CDS	29475255	29475451	.	-	2	Parent=Os06t0700700-02
Chr06	irgsp1_rep	CDS	29473630	29475159	.	-	0	Parent=Os06t0700700-02
Chr06	irgsp1_rep	mRNA	29491084	29491712	.	-	.	ID=Os06t0700750-01;Name=Os06t0700750-01;Locus_id=Os06g0700750;Note=Conserved hypothetical protein.;Transcript_evidence=AK241491 (DDBJ%2C Best hit);ORF_evidence=Q5JN77 (UniProt);NIAS_FLcDNA=J065167B11;TENOR=Os06t0700750-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	29491673	29491712	.	-	.	Parent=Os06t0700750-01
Chr06	irgsp1_rep	CDS	29491088	29491672	.	-	0	Parent=Os06t0700750-01
Chr06	irgsp1_rep	three_prime_UTR	29491084	29491087	.	-	.	Parent=Os06t0700750-01
Chr06	irgsp1_rep	mRNA	29503817	29507313	.	-	.	ID=Os06t0701100-02;Name=Os06t0701100-02;Locus_id=Os06g0701100;CGSNL Gene Symbol=EIF4A1;CGSNL Gene Name=EUKARYOTIC INITIATION FACTOR 4A-1;Oryzabase Gene Symbol Synonym(s)=eIF-4a%2C EIF4A%2C eIF4A1%2C elF-4A%2C eIF4A-1%2C OsRH4;Oryzabase Gene Name Synonym(s)=EUKARYOTIC INITIATION FACTOR 4A%2C eukaryotic initiation factor 4A-1%2C initiation factor eIF-4A%2C initiation factor eIF-4AII%2C RNA helicase 4;Note=Eukaryotic initiation factor 4A (eIF4A) (eIF-4A).;Transcript_evidence=AK119234 (DDBJ%2C Best hit),AK065230 (DDBJ%2C Best hit),AK099927 (DDBJ%2C Best hit),AK105454 (DDBJ%2C Best hit);ORF_evidence=P41378 (UniProt);NIAS_FLcDNA=001-114-H08,J013002H10,J013116O09,001-125-D03;Oryzabase=14475;Expression=AK119234;TENOR=Os06t0701100-02;KEGG=Os06t0701100-02
Chr06	irgsp1_rep	five_prime_UTR	29507179	29507313	.	-	.	Parent=Os06t0701100-02
Chr06	irgsp1_rep	five_prime_UTR	29506038	29506039	.	-	.	Parent=Os06t0701100-02
Chr06	irgsp1_rep	CDS	29505967	29506037	.	-	0	Parent=Os06t0701100-02
Chr06	irgsp1_rep	CDS	29505751	29505857	.	-	1	Parent=Os06t0701100-02
Chr06	irgsp1_rep	CDS	29505236	29505666	.	-	2	Parent=Os06t0701100-02
Chr06	irgsp1_rep	CDS	29504188	29504823	.	-	0	Parent=Os06t0701100-02
Chr06	irgsp1_rep	three_prime_UTR	29503817	29504187	.	-	.	Parent=Os06t0701100-02
Chr06	irgsp1_rep	mRNA	29503895	29505997	.	-	.	ID=Os06t0701100-03;Name=Os06t0701100-03;Locus_id=Os06g0701100;CGSNL Gene Symbol=EIF4A1;CGSNL Gene Name=EUKARYOTIC INITIATION FACTOR 4A-1;Oryzabase Gene Symbol Synonym(s)=eIF-4a%2C EIF4A%2C eIF4A1%2C elF-4A%2C eIF4A-1%2C OsRH4;Oryzabase Gene Name Synonym(s)=EUKARYOTIC INITIATION FACTOR 4A%2C eukaryotic initiation factor 4A-1%2C initiation factor eIF-4A%2C initiation factor eIF-4AII%2C RNA helicase 4;Note=Similar to cDNA clone:001-114-H08%2C full insert sequence.;Transcript_evidence=AK061696 (DDBJ%2C Best hit);ORF_evidence=B7EPR0 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=RNA helicase%2C ATP-dependent%2C DEAD-box%2C conserved site (IPR000629),Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=001-037-C12;Oryzabase=14475;Expression=AK061696;TENOR=Os06t0701100-03;KEGG=Os06t0701100-03
Chr06	irgsp1_rep	five_prime_UTR	29505996	29505997	.	-	.	Parent=Os06t0701100-03
Chr06	irgsp1_rep	CDS	29505967	29505995	.	-	0	Parent=Os06t0701100-03
Chr06	irgsp1_rep	CDS	29505751	29505857	.	-	1	Parent=Os06t0701100-03
Chr06	irgsp1_rep	CDS	29505236	29505666	.	-	2	Parent=Os06t0701100-03
Chr06	irgsp1_rep	CDS	29504188	29504823	.	-	0	Parent=Os06t0701100-03
Chr06	irgsp1_rep	three_prime_UTR	29503895	29504187	.	-	.	Parent=Os06t0701100-03
Chr06	irgsp1_rep	mRNA	29508897	29515165	.	-	.	ID=Os06t0701200-01;Name=Os06t0701200-01;Locus_id=Os06g0701200;Note=UTP--glucose-1-phosphate uridylyltransferase family protein.;Transcript_evidence=AK064009 (DDBJ%2C Best hit);ORF_evidence=Q5Z8Y4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=UTP--glucose-1-phosphate uridylyltransferase (IPR002618);NIAS_FLcDNA=001-124-G10;Expression=AK064009;TENOR=Os06t0701200-01;KEGG=Os06t0701200-01 (EC:2.7.7.64)
Chr06	irgsp1_rep	five_prime_UTR	29515055	29515165	.	-	.	Parent=Os06t0701200-01
Chr06	irgsp1_rep	CDS	29514938	29515054	.	-	0	Parent=Os06t0701200-01
Chr06	irgsp1_rep	CDS	29514406	29514510	.	-	0	Parent=Os06t0701200-01
Chr06	irgsp1_rep	CDS	29514017	29514133	.	-	0	Parent=Os06t0701200-01
Chr06	irgsp1_rep	CDS	29513658	29513798	.	-	0	Parent=Os06t0701200-01
Chr06	irgsp1_rep	CDS	29512938	29513037	.	-	0	Parent=Os06t0701200-01
Chr06	irgsp1_rep	CDS	29512516	29512643	.	-	2	Parent=Os06t0701200-01
Chr06	irgsp1_rep	CDS	29512333	29512404	.	-	0	Parent=Os06t0701200-01
Chr06	irgsp1_rep	CDS	29512158	29512222	.	-	0	Parent=Os06t0701200-01
Chr06	irgsp1_rep	CDS	29511948	29512008	.	-	1	Parent=Os06t0701200-01
Chr06	irgsp1_rep	CDS	29511710	29511827	.	-	0	Parent=Os06t0701200-01
Chr06	irgsp1_rep	CDS	29511376	29511500	.	-	2	Parent=Os06t0701200-01
Chr06	irgsp1_rep	CDS	29511071	29511147	.	-	0	Parent=Os06t0701200-01
Chr06	irgsp1_rep	CDS	29510424	29510529	.	-	1	Parent=Os06t0701200-01
Chr06	irgsp1_rep	CDS	29510271	29510330	.	-	0	Parent=Os06t0701200-01
Chr06	irgsp1_rep	CDS	29509782	29509862	.	-	0	Parent=Os06t0701200-01
Chr06	irgsp1_rep	CDS	29509460	29509699	.	-	0	Parent=Os06t0701200-01
Chr06	irgsp1_rep	CDS	29509206	29509343	.	-	0	Parent=Os06t0701200-01
Chr06	irgsp1_rep	three_prime_UTR	29508897	29509205	.	-	.	Parent=Os06t0701200-01
Chr06	irgsp1_rep	mRNA	29518560	29523982	.	-	.	ID=Os06t0701300-01;Name=Os06t0701300-01;Locus_id=Os06g0701300;Oryzabase Gene Symbol Synonym(s)=OsSBeL1%2C SBeL1%2C SBEL1;Oryzabase Gene Name Synonym(s)=Serine Beta-Lactamase 1%2C SERINE BETA-LACTAMASE 1;Note=Similar to ABC1 family protein.;Transcript_evidence=AK120169 (DDBJ%2C Best hit);ORF_evidence=XP_002874225.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Beta-lactamase-related (IPR001466),ABC-1 (IPR004147),Protein kinase-like domain (IPR011009),Beta-lactamase/transpeptidase-like (IPR012338);NIAS_FLcDNA=J013031N20;Oryzabase=20032;Expression=AK120169;TENOR=Os06t0701300-01;KEGG=Os06t0701300-01
Chr06	irgsp1_rep	five_prime_UTR	29523798	29523982	.	-	.	Parent=Os06t0701300-01
Chr06	irgsp1_rep	five_prime_UTR	29523005	29523095	.	-	.	Parent=Os06t0701300-01
Chr06	irgsp1_rep	CDS	29522930	29523004	.	-	0	Parent=Os06t0701300-01
Chr06	irgsp1_rep	CDS	29522604	29522831	.	-	0	Parent=Os06t0701300-01
Chr06	irgsp1_rep	CDS	29522417	29522503	.	-	0	Parent=Os06t0701300-01
Chr06	irgsp1_rep	CDS	29522185	29522274	.	-	0	Parent=Os06t0701300-01
Chr06	irgsp1_rep	CDS	29521983	29522109	.	-	0	Parent=Os06t0701300-01
Chr06	irgsp1_rep	CDS	29521730	29521830	.	-	2	Parent=Os06t0701300-01
Chr06	irgsp1_rep	CDS	29521468	29521636	.	-	0	Parent=Os06t0701300-01
Chr06	irgsp1_rep	CDS	29521234	29521355	.	-	2	Parent=Os06t0701300-01
Chr06	irgsp1_rep	CDS	29520580	29520708	.	-	0	Parent=Os06t0701300-01
Chr06	irgsp1_rep	CDS	29520391	29520489	.	-	0	Parent=Os06t0701300-01
Chr06	irgsp1_rep	CDS	29520249	29520306	.	-	0	Parent=Os06t0701300-01
Chr06	irgsp1_rep	CDS	29520099	29520174	.	-	2	Parent=Os06t0701300-01
Chr06	irgsp1_rep	CDS	29519886	29520012	.	-	1	Parent=Os06t0701300-01
Chr06	irgsp1_rep	CDS	29519648	29519805	.	-	0	Parent=Os06t0701300-01
Chr06	irgsp1_rep	CDS	29518560	29518611	.	-	1	Parent=Os06t0701300-01
Chr06	irgsp1_rep	mRNA	29516287	29523982	.	-	.	ID=Os06t0701300-02;Name=Os06t0701300-02;Locus_id=Os06g0701300;Oryzabase Gene Symbol Synonym(s)=OsSBeL1%2C SBeL1%2C SBEL1;Oryzabase Gene Name Synonym(s)=Serine Beta-Lactamase 1%2C SERINE BETA-LACTAMASE 1;Note=Beta-lactamase family protein.;Transcript_evidence=AK065611 (DDBJ%2C Best hit);ORF_evidence=B9FQR1 (UniProt);GO=Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Beta-lactamase-related (IPR001466),ABC-1 (IPR004147),Protein kinase-like domain (IPR011009),Beta-lactamase/transpeptidase-like (IPR012338);NIAS_FLcDNA=J013029I23;Oryzabase=20032;Expression=AK065611;TENOR=Os06t0701300-02;KEGG=Os06t0701300-02
Chr06	irgsp1_rep	five_prime_UTR	29523798	29523982	.	-	.	Parent=Os06t0701300-02
Chr06	irgsp1_rep	five_prime_UTR	29523005	29523095	.	-	.	Parent=Os06t0701300-02
Chr06	irgsp1_rep	CDS	29522930	29523004	.	-	0	Parent=Os06t0701300-02
Chr06	irgsp1_rep	CDS	29522604	29522831	.	-	0	Parent=Os06t0701300-02
Chr06	irgsp1_rep	CDS	29522417	29522503	.	-	0	Parent=Os06t0701300-02
Chr06	irgsp1_rep	CDS	29522185	29522274	.	-	0	Parent=Os06t0701300-02
Chr06	irgsp1_rep	CDS	29521983	29522109	.	-	0	Parent=Os06t0701300-02
Chr06	irgsp1_rep	CDS	29521730	29521830	.	-	2	Parent=Os06t0701300-02
Chr06	irgsp1_rep	CDS	29521468	29521636	.	-	0	Parent=Os06t0701300-02
Chr06	irgsp1_rep	CDS	29521234	29521355	.	-	2	Parent=Os06t0701300-02
Chr06	irgsp1_rep	CDS	29520580	29520708	.	-	0	Parent=Os06t0701300-02
Chr06	irgsp1_rep	CDS	29520391	29520489	.	-	0	Parent=Os06t0701300-02
Chr06	irgsp1_rep	CDS	29520249	29520306	.	-	0	Parent=Os06t0701300-02
Chr06	irgsp1_rep	CDS	29520099	29520174	.	-	2	Parent=Os06t0701300-02
Chr06	irgsp1_rep	CDS	29519886	29520012	.	-	1	Parent=Os06t0701300-02
Chr06	irgsp1_rep	CDS	29519648	29519805	.	-	0	Parent=Os06t0701300-02
Chr06	irgsp1_rep	CDS	29518539	29518611	.	-	1	Parent=Os06t0701300-02
Chr06	irgsp1_rep	CDS	29518427	29518455	.	-	0	Parent=Os06t0701300-02
Chr06	irgsp1_rep	CDS	29517070	29517220	.	-	1	Parent=Os06t0701300-02
Chr06	irgsp1_rep	three_prime_UTR	29516287	29517069	.	-	.	Parent=Os06t0701300-02
Chr06	irgsp1_rep	mRNA	29521985	29523981	.	-	.	ID=Os06t0701300-03;Name=Os06t0701300-03;Locus_id=Os06g0701300;Oryzabase Gene Symbol Synonym(s)=OsSBeL1%2C SBeL1%2C SBEL1;Oryzabase Gene Name Synonym(s)=Serine Beta-Lactamase 1%2C SERINE BETA-LACTAMASE 1;Note=Similar to ABC1 family protein.;Transcript_evidence=AK122000 (DDBJ%2C Best hit);ORF_evidence=NP_568458.1 (RefSeq);InterPro=ABC-1 (IPR004147);NIAS_FLcDNA=J033110I09;Oryzabase=20032;TENOR=Os06t0701300-03
Chr06	irgsp1_rep	five_prime_UTR	29523798	29523981	.	-	.	Parent=Os06t0701300-03
Chr06	irgsp1_rep	five_prime_UTR	29523005	29523095	.	-	.	Parent=Os06t0701300-03
Chr06	irgsp1_rep	CDS	29522930	29523004	.	-	0	Parent=Os06t0701300-03
Chr06	irgsp1_rep	CDS	29522604	29522831	.	-	0	Parent=Os06t0701300-03
Chr06	irgsp1_rep	CDS	29522417	29522503	.	-	0	Parent=Os06t0701300-03
Chr06	irgsp1_rep	CDS	29522185	29522274	.	-	0	Parent=Os06t0701300-03
Chr06	irgsp1_rep	CDS	29521985	29522109	.	-	0	Parent=Os06t0701300-03
Chr06	irgsp1_rep	mRNA	29527397	29528953	.	-	.	ID=Os06t0701400-01;Name=Os06t0701400-01;Locus_id=Os06g0701400;Note=Similar to 60S acidic ribosomal protein P3 (P1/P2-like) (P3A).;Transcript_evidence=AK121229 (DDBJ%2C Best hit);ORF_evidence=NP_001105389.1 (RefSeq);GO=Biological Process: translational elongation (GO:0006414),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein 60S (IPR001813);NIAS_FLcDNA=J023091M16;Expression=AK121229;TENOR=Os06t0701400-01;KEGG=Os06t0701400-01
Chr06	irgsp1_rep	five_prime_UTR	29528886	29528953	.	-	.	Parent=Os06t0701400-01
Chr06	irgsp1_rep	CDS	29528688	29528885	.	-	0	Parent=Os06t0701400-01
Chr06	irgsp1_rep	CDS	29527611	29527772	.	-	0	Parent=Os06t0701400-01
Chr06	irgsp1_rep	three_prime_UTR	29527397	29527610	.	-	.	Parent=Os06t0701400-01
Chr06	irgsp1_rep	mRNA	29534805	29536553	.	-	.	ID=Os06t0701600-01;Name=Os06t0701600-01;Locus_id=Os06g0701600;RAP-DB Gene Symbol Synonym(s)=OsHKT2%3B4%2C OsHKT9;RAP-DB Gene Name Synonym(s)=HIGH-AFFINITY K<sup>+</sup> TRANSPORTER 9;CGSNL Gene Symbol=HKT9;CGSNL Gene Name=HIGH-AFFINITY K+ TRANSPORTER 9;Oryzabase Gene Symbol Synonym(s)=OsHKT9%2C OsHKT2%3B4;Note=Monovalent cation transporter%2C Na<sup>+</sup> and K<sup>+</sup> transport;Transcript_evidence=AJ491855;ORF_evidence=Q8L4K5;GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Molecular Function: cation transmembrane transporter activity (GO:0008324);InterPro=Cation transporter (IPR003445);Manual Curation=August 7%2C 2014;Literature_PMID=22773759,21610181;Oryzabase=9025;TENOR=Os06t0701600-00
Chr06	irgsp1_rep	five_prime_UTR	29536536	29536553	.	-	.	Parent=Os06t0701600-01
Chr06	irgsp1_rep	CDS	29535433	29536535	.	-	0	Parent=Os06t0701600-01
Chr06	irgsp1_rep	CDS	29535118	29535348	.	-	1	Parent=Os06t0701600-01
Chr06	irgsp1_rep	CDS	29534814	29535009	.	-	1	Parent=Os06t0701600-01
Chr06	irgsp1_rep	three_prime_UTR	29534805	29534813	.	-	.	Parent=Os06t0701600-01
Chr06	irgsp1_rep	mRNA	29538938	29541203	.	-	.	ID=Os06t0701700-01;Name=Os06t0701700-01;Locus_id=Os06g0701700;RAP-DB Gene Symbol Synonym(s)=HKT1%2C OsHKT1%2C OsHKT2%3B1%2C Ni (Nipponbare)-OsHKT1%2C Po (Pokkali)-HKT1%2C OsHKT1%3B1;RAP-DB Gene Name Synonym(s)=HIGH-AFFINITY K+ TRANSPORTER 1%2C High-affinity K+ Transporter 1;CGSNL Gene Symbol=HKT1;CGSNL Gene Name=HIGH-AFFINITY K+ TRANSPORTER 1;Oryzabase Gene Symbol Synonym(s)=OsHKT1%2C OsHKT2%3B1%2C HKT2%3B1%2C Ni (Nipponbare)-OsHKT1%2C Po (Pokkali)-HKT1%2C OsHKT1%3B1%2C HKT1%3B1;Oryzabase Gene Name Synonym(s)=High-affinity K+ Transporter 1;Note=Ion transporter %2C Na+/K+ symport;Transcript_evidence=AB061311 (DDBJ);ORF_evidence=Q0D9S3 (UniProt);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Molecular Function: cation transmembrane transporter activity (GO:0008324);InterPro=Cation transporter (IPR003445);Manual Curation=August 25%2C 2009;Literature_PMID=11489190,12795699,16809061,19482918;Oryzabase=8998;TENOR=Os06t0701700-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	29541164	29541203	.	-	.	Parent=Os06t0701700-01
Chr06	irgsp1_rep	CDS	29539998	29541163	.	-	0	Parent=Os06t0701700-01
Chr06	irgsp1_rep	CDS	29539663	29539884	.	-	1	Parent=Os06t0701700-01
Chr06	irgsp1_rep	CDS	29539166	29539370	.	-	1	Parent=Os06t0701700-01
Chr06	irgsp1_rep	three_prime_UTR	29538938	29539165	.	-	.	Parent=Os06t0701700-01
Chr06	irgsp1_rep	mRNA	29538992	29540164	.	-	.	ID=Os06t0701700-02;Name=Os06t0701700-02;Locus_id=Os06g0701700;CGSNL Gene Symbol=HKT1;CGSNL Gene Name=HIGH-AFFINITY K+ TRANSPORTER 1;Oryzabase Gene Symbol Synonym(s)=OsHKT1%2C OsHKT2%3B1%2C HKT2%3B1%2C Ni (Nipponbare)-OsHKT1%2C Po (Pokkali)-HKT1%2C OsHKT1%3B1%2C HKT1%3B1;Oryzabase Gene Name Synonym(s)=High-affinity K+ Transporter 1;Note=Similar to Cation transporter HKT1.;Transcript_evidence=AK105132 (DDBJ%2C Best hit);ORF_evidence=Q0D9S3 (UniProt);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Molecular Function: cation transmembrane transporter activity (GO:0008324);InterPro=Cation transporter (IPR003445);NIAS_FLcDNA=001-101-G04;Oryzabase=8998;Expression=AK105132;TENOR=Os06t0701700-02
Chr06	irgsp1_rep	CDS	29539998	29540164	.	-	0	Parent=Os06t0701700-02
Chr06	irgsp1_rep	CDS	29539663	29539884	.	-	1	Parent=Os06t0701700-02
Chr06	irgsp1_rep	CDS	29539166	29539370	.	-	1	Parent=Os06t0701700-02
Chr06	irgsp1_rep	three_prime_UTR	29538992	29539165	.	-	.	Parent=Os06t0701700-02
Chr06	irgsp1_rep	mRNA	29577788	29578513	.	+	.	ID=Os06t0701900-01;Name=Os06t0701900-01;Locus_id=Os06g0701900;RAP-DB Gene Symbol Synonym(s)=OsSAUR27;CGSNL Gene Symbol=SAUR27;CGSNL Gene Name=SMALL AUXIN-UP RNA 27;Oryzabase Gene Symbol Synonym(s)=OsSAUR27;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 27%2C AUXIN-INDUCED PROTEIN 10A5;Note=Auxin-responsive SAUR gene family member%2C Plant hormone signal transduction%2C Regulation of tiller development%2C Control of tiller number;Transcript_evidence=AK375274 (domesticated barley);ORF_evidence=Q5Z8X4;GO=Biological Process: response to auxin (GO:0009733);InterPro=Small auxin-up RNA (IPR003676);Manual Curation=October 21%2C 2020;Literature_PMID=33058400;Oryzabase=9152;TENOR=Os06t0701900-00
Chr06	irgsp1_rep	five_prime_UTR	29577788	29577973	.	+	.	Parent=Os06t0701900-01
Chr06	irgsp1_rep	CDS	29577974	29578378	.	+	0	Parent=Os06t0701900-01
Chr06	irgsp1_rep	three_prime_UTR	29578379	29578513	.	+	.	Parent=Os06t0701900-01
Chr06	irgsp1_rep	mRNA	29580155	29581194	.	-	.	ID=Os06t0702000-01;Name=Os06t0702000-01;Locus_id=Os06g0702000;CGSNL Gene Symbol=SAUR28;CGSNL Gene Name=SMALL AUXIN-UP RNA 28;Oryzabase Gene Symbol Synonym(s)=OsSAUR28;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 28;Note=Auxin responsive SAUR protein family protein.;Transcript_evidence=AK070950 (DDBJ%2C Best hit);ORF_evidence=A2YGQ2 (UniProt);InterPro=Auxin responsive SAUR protein (IPR003676);NIAS_FLcDNA=J023070H04;Oryzabase=9153;Expression=AK070950;TENOR=Os06t0702000-01;KEGG=Os06t0702000-01
Chr06	irgsp1_rep	five_prime_UTR	29580899	29581194	.	-	.	Parent=Os06t0702000-01
Chr06	irgsp1_rep	CDS	29580848	29580898	.	-	0	Parent=Os06t0702000-01
Chr06	irgsp1_rep	CDS	29580476	29580610	.	-	0	Parent=Os06t0702000-01
Chr06	irgsp1_rep	three_prime_UTR	29580155	29580475	.	-	.	Parent=Os06t0702000-01
Chr06	irgsp1_rep	mRNA	29593426	29595540	.	+	.	ID=Os06t0702100-00;Name=Os06t0702100-00;Locus_id=Os06g0702100;Note=Methyl-CpG DNA binding domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001058488.2 (RefSeq);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Methyl-CpG DNA binding (IPR001739),Zinc finger%2C CW-type (IPR011124),DNA-binding%2C integrase-type (IPR016177);TENOR=Os06t0702100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	29593426	29594021	.	+	0	Parent=Os06t0702100-00
Chr06	irgsp1_rep	CDS	29594493	29594546	.	+	1	Parent=Os06t0702100-00
Chr06	irgsp1_rep	CDS	29594720	29594871	.	+	1	Parent=Os06t0702100-00
Chr06	irgsp1_rep	CDS	29595263	29595540	.	+	2	Parent=Os06t0702100-00
Chr06	irgsp1_rep	mRNA	29596080	29598295	.	-	.	ID=Os06t0702200-01;Name=Os06t0702200-01;Locus_id=Os06g0702200;Note=Conserved hypothetical protein.;Transcript_evidence=AK110868 (DDBJ%2C Best hit);ORF_evidence=A3BF51 (UniProt);NIAS_FLcDNA=002-172-E03;Expression=AK110868;TENOR=Os06t0702200-01;KEGG=Os06t0702200-01
Chr06	irgsp1_rep	five_prime_UTR	29598110	29598295	.	-	.	Parent=Os06t0702200-01
Chr06	irgsp1_rep	five_prime_UTR	29597349	29597385	.	-	.	Parent=Os06t0702200-01
Chr06	irgsp1_rep	CDS	29596248	29597348	.	-	0	Parent=Os06t0702200-01
Chr06	irgsp1_rep	three_prime_UTR	29596080	29596247	.	-	.	Parent=Os06t0702200-01
Chr06	irgsp1_rep	mRNA	29620543	29622471	.	-	.	ID=Os06t0702400-01;Name=Os06t0702400-01;Locus_id=Os06g0702400;Note=Conserved hypothetical protein.;Transcript_evidence=AK120529 (DDBJ%2C Best hit);ORF_evidence=A3BF53 (UniProt);NIAS_FLcDNA=J013127G02;TENOR=Os06t0702400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	29622471	29622471	.	-	.	Parent=Os06t0702400-01
Chr06	irgsp1_rep	CDS	29622283	29622470	.	-	0	Parent=Os06t0702400-01
Chr06	irgsp1_rep	CDS	29621743	29621794	.	-	1	Parent=Os06t0702400-01
Chr06	irgsp1_rep	three_prime_UTR	29620543	29621742	.	-	.	Parent=Os06t0702400-01
Chr06	irgsp1_rep	mRNA	29626275	29634668	.	+	.	ID=Os06t0702500-01;Name=Os06t0702500-01;Locus_id=Os06g0702500;CGSNL Gene Symbol=-;CGSNL Gene Name=-;Oryzabase Gene Symbol Synonym(s)=OsARA1;Oryzabase Gene Name Synonym(s)=CAP1-related gene;Note=Ribosomal protein S5 domain 2-type fold domain containing protein.;Transcript_evidence=AK072069 (DDBJ%2C Best hit);ORF_evidence=NP_193348.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Biological Process: phosphorylation (GO:0016310),Cellular Component: cytoplasm (GO:0005737),Molecular Function: ATP binding (GO:0005524),Molecular Function: kinase activity (GO:0016301),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=GHMP kinase (IPR006204),Mevalonate/galactokinase (IPR006206),Galactokinase%2C glycosyltransferase (IPR012369),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Galactokinase galactose-binding domain (IPR019539),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=J013108L09;Oryzabase=11814;Expression=AK072069;TENOR=Os06t0702500-01;KEGG=Os06t0702500-01
Chr06	irgsp1_rep	five_prime_UTR	29626275	29626332	.	+	.	Parent=Os06t0702500-01
Chr06	irgsp1_rep	CDS	29626333	29626443	.	+	0	Parent=Os06t0702500-01
Chr06	irgsp1_rep	CDS	29626514	29626705	.	+	0	Parent=Os06t0702500-01
Chr06	irgsp1_rep	CDS	29626794	29626877	.	+	0	Parent=Os06t0702500-01
Chr06	irgsp1_rep	CDS	29627016	29627092	.	+	0	Parent=Os06t0702500-01
Chr06	irgsp1_rep	CDS	29627311	29627377	.	+	1	Parent=Os06t0702500-01
Chr06	irgsp1_rep	CDS	29627541	29627598	.	+	0	Parent=Os06t0702500-01
Chr06	irgsp1_rep	CDS	29627724	29627791	.	+	2	Parent=Os06t0702500-01
Chr06	irgsp1_rep	CDS	29627882	29627944	.	+	0	Parent=Os06t0702500-01
Chr06	irgsp1_rep	CDS	29628304	29628357	.	+	0	Parent=Os06t0702500-01
Chr06	irgsp1_rep	CDS	29628450	29628552	.	+	0	Parent=Os06t0702500-01
Chr06	irgsp1_rep	CDS	29628637	29628746	.	+	2	Parent=Os06t0702500-01
Chr06	irgsp1_rep	CDS	29628835	29628954	.	+	0	Parent=Os06t0702500-01
Chr06	irgsp1_rep	CDS	29629201	29629257	.	+	0	Parent=Os06t0702500-01
Chr06	irgsp1_rep	CDS	29629547	29629710	.	+	0	Parent=Os06t0702500-01
Chr06	irgsp1_rep	CDS	29629797	29629956	.	+	1	Parent=Os06t0702500-01
Chr06	irgsp1_rep	CDS	29630621	29630704	.	+	0	Parent=Os06t0702500-01
Chr06	irgsp1_rep	CDS	29630975	29631097	.	+	0	Parent=Os06t0702500-01
Chr06	irgsp1_rep	CDS	29631269	29631399	.	+	0	Parent=Os06t0702500-01
Chr06	irgsp1_rep	CDS	29631478	29631559	.	+	1	Parent=Os06t0702500-01
Chr06	irgsp1_rep	CDS	29631777	29631864	.	+	0	Parent=Os06t0702500-01
Chr06	irgsp1_rep	CDS	29632044	29632087	.	+	2	Parent=Os06t0702500-01
Chr06	irgsp1_rep	CDS	29632165	29632260	.	+	0	Parent=Os06t0702500-01
Chr06	irgsp1_rep	CDS	29632362	29632438	.	+	0	Parent=Os06t0702500-01
Chr06	irgsp1_rep	CDS	29632550	29632750	.	+	1	Parent=Os06t0702500-01
Chr06	irgsp1_rep	CDS	29632840	29633005	.	+	1	Parent=Os06t0702500-01
Chr06	irgsp1_rep	CDS	29633284	29633355	.	+	0	Parent=Os06t0702500-01
Chr06	irgsp1_rep	CDS	29633488	29633691	.	+	0	Parent=Os06t0702500-01
Chr06	irgsp1_rep	CDS	29633860	29633988	.	+	0	Parent=Os06t0702500-01
Chr06	irgsp1_rep	three_prime_UTR	29633989	29634216	.	+	.	Parent=Os06t0702500-01
Chr06	irgsp1_rep	three_prime_UTR	29634294	29634668	.	+	.	Parent=Os06t0702500-01
Chr06	irgsp1_rep	mRNA	29626277	29634291	.	+	.	ID=Os06t0702500-02;Name=Os06t0702500-02;Locus_id=Os06g0702500;CGSNL Gene Symbol=-;CGSNL Gene Name=-;Oryzabase Gene Symbol Synonym(s)=OsARA1;Oryzabase Gene Name Synonym(s)=CAP1-related gene;Note=Similar to predicted protein.;Transcript_evidence=AK067999 (DDBJ%2C Best hit);ORF_evidence=NP_193348.1 (RefSeq);NIAS_FLcDNA=J013129F06;Oryzabase=11814;Expression=AK067999;TENOR=Os06t0702500-02;KEGG=Os06t0702500-02
Chr06	irgsp1_rep	five_prime_UTR	29626277	29626332	.	+	.	Parent=Os06t0702500-02
Chr06	irgsp1_rep	CDS	29626333	29626443	.	+	0	Parent=Os06t0702500-02
Chr06	irgsp1_rep	CDS	29626514	29626705	.	+	0	Parent=Os06t0702500-02
Chr06	irgsp1_rep	CDS	29626794	29626877	.	+	0	Parent=Os06t0702500-02
Chr06	irgsp1_rep	CDS	29627016	29627092	.	+	0	Parent=Os06t0702500-02
Chr06	irgsp1_rep	CDS	29627311	29627377	.	+	1	Parent=Os06t0702500-02
Chr06	irgsp1_rep	CDS	29627541	29627723	.	+	0	Parent=Os06t0702500-02
Chr06	irgsp1_rep	three_prime_UTR	29627724	29627791	.	+	.	Parent=Os06t0702500-02
Chr06	irgsp1_rep	three_prime_UTR	29627882	29627944	.	+	.	Parent=Os06t0702500-02
Chr06	irgsp1_rep	three_prime_UTR	29628311	29628357	.	+	.	Parent=Os06t0702500-02
Chr06	irgsp1_rep	three_prime_UTR	29628450	29628552	.	+	.	Parent=Os06t0702500-02
Chr06	irgsp1_rep	three_prime_UTR	29628637	29628746	.	+	.	Parent=Os06t0702500-02
Chr06	irgsp1_rep	three_prime_UTR	29628844	29628954	.	+	.	Parent=Os06t0702500-02
Chr06	irgsp1_rep	three_prime_UTR	29629201	29629257	.	+	.	Parent=Os06t0702500-02
Chr06	irgsp1_rep	three_prime_UTR	29629547	29629710	.	+	.	Parent=Os06t0702500-02
Chr06	irgsp1_rep	three_prime_UTR	29629797	29629956	.	+	.	Parent=Os06t0702500-02
Chr06	irgsp1_rep	three_prime_UTR	29630621	29631097	.	+	.	Parent=Os06t0702500-02
Chr06	irgsp1_rep	three_prime_UTR	29631269	29631399	.	+	.	Parent=Os06t0702500-02
Chr06	irgsp1_rep	three_prime_UTR	29631478	29631559	.	+	.	Parent=Os06t0702500-02
Chr06	irgsp1_rep	three_prime_UTR	29631777	29631864	.	+	.	Parent=Os06t0702500-02
Chr06	irgsp1_rep	three_prime_UTR	29632044	29632087	.	+	.	Parent=Os06t0702500-02
Chr06	irgsp1_rep	three_prime_UTR	29632165	29632260	.	+	.	Parent=Os06t0702500-02
Chr06	irgsp1_rep	three_prime_UTR	29632362	29632438	.	+	.	Parent=Os06t0702500-02
Chr06	irgsp1_rep	three_prime_UTR	29632550	29632750	.	+	.	Parent=Os06t0702500-02
Chr06	irgsp1_rep	three_prime_UTR	29632840	29633005	.	+	.	Parent=Os06t0702500-02
Chr06	irgsp1_rep	three_prime_UTR	29633284	29633355	.	+	.	Parent=Os06t0702500-02
Chr06	irgsp1_rep	three_prime_UTR	29633488	29633691	.	+	.	Parent=Os06t0702500-02
Chr06	irgsp1_rep	three_prime_UTR	29633860	29634291	.	+	.	Parent=Os06t0702500-02
Chr06	irgsp1_rep	mRNA	29657101	29665060	.	+	.	ID=Os06t0702600-01;Name=Os06t0702600-01;Locus_id=Os06g0702600;RAP-DB Gene Symbol Synonym(s)=ARF7A%2C OsARF7a%2C OsARF19;RAP-DB Gene Name Synonym(s)=AUXIN RESPONSE FACTOR 7A%2C auxin response factor-7a%2C auxin response factor 7a%2C auxin response factor-19%2C auxin response factor 19;CGSNL Gene Symbol=ARF7A;CGSNL Gene Name=AUXIN RESPONSE FACTOR 7A;Oryzabase Gene Symbol Synonym(s)=OsARF7a%2C OsARF19%2C ARF19%2C OsARF7;Oryzabase Gene Name Synonym(s)=auxin response factor-7a%2C auxin response factor 7a%2C auxin response factor-19%2C auxin response factor 19;Note=Auxin response factor 19%2C Control of leaf angle;Transcript_evidence=AK103312;ORF_evidence=Q0D9R7-2;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Biological Process: response to hormone (GO:0009725),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515),Cellular Component: nucleus (GO:0005634);InterPro=DNA-binding pseudobarrel domain (IPR015300),B3 DNA binding domain (IPR003340),Auxin response factor (IPR010525),AUX/IAA domain (IPR033389),PB1 domain (IPR000270);NIAS_FLcDNA=J033125G19;Manual Curation=December 8%2C 2016;Literature_PMID=24995795;Oryzabase=10000;Expression=AK103312;TENOR=Os06t0702600-01;KEGG=Os06t0702600-01
Chr06	irgsp1_rep	five_prime_UTR	29657101	29657409	.	+	.	Parent=Os06t0702600-01
Chr06	irgsp1_rep	CDS	29657410	29657524	.	+	0	Parent=Os06t0702600-01
Chr06	irgsp1_rep	CDS	29658030	29658151	.	+	2	Parent=Os06t0702600-01
Chr06	irgsp1_rep	CDS	29659534	29659632	.	+	0	Parent=Os06t0702600-01
Chr06	irgsp1_rep	CDS	29659719	29659775	.	+	0	Parent=Os06t0702600-01
Chr06	irgsp1_rep	CDS	29659884	29660039	.	+	0	Parent=Os06t0702600-01
Chr06	irgsp1_rep	CDS	29660121	29660205	.	+	0	Parent=Os06t0702600-01
Chr06	irgsp1_rep	CDS	29660476	29660566	.	+	2	Parent=Os06t0702600-01
Chr06	irgsp1_rep	CDS	29660708	29660872	.	+	1	Parent=Os06t0702600-01
Chr06	irgsp1_rep	CDS	29660965	29661087	.	+	1	Parent=Os06t0702600-01
Chr06	irgsp1_rep	CDS	29661235	29661310	.	+	1	Parent=Os06t0702600-01
Chr06	irgsp1_rep	CDS	29661414	29661543	.	+	0	Parent=Os06t0702600-01
Chr06	irgsp1_rep	CDS	29661852	29662795	.	+	2	Parent=Os06t0702600-01
Chr06	irgsp1_rep	CDS	29663306	29663725	.	+	0	Parent=Os06t0702600-01
Chr06	irgsp1_rep	CDS	29664240	29664430	.	+	0	Parent=Os06t0702600-01
Chr06	irgsp1_rep	CDS	29664598	29664799	.	+	1	Parent=Os06t0702600-01
Chr06	irgsp1_rep	three_prime_UTR	29664800	29665060	.	+	.	Parent=Os06t0702600-01
Chr06	irgsp1_rep	mRNA	29665362	29667372	.	-	.	ID=Os06t0702700-01;Name=Os06t0702700-01;Locus_id=Os06g0702700;Note=Butirosin biosynthesis%2C BtrG-like domain containing protein.;Transcript_evidence=AK100260 (DDBJ%2C Best hit),AK107735 (DDBJ%2C Best hit);ORF_evidence=B4FVZ7 (UniProt);InterPro=AIG2-like (IPR009288),Butirosin biosynthesis%2C BtrG-like (IPR013024);NIAS_FLcDNA=J023063C04,002-132-G02;Expression=AK100260;TENOR=Os06t0702700-01;KEGG=Os06t0702700-01
Chr06	irgsp1_rep	five_prime_UTR	29667257	29667372	.	-	.	Parent=Os06t0702700-01
Chr06	irgsp1_rep	CDS	29667099	29667256	.	-	0	Parent=Os06t0702700-01
Chr06	irgsp1_rep	CDS	29666745	29666817	.	-	1	Parent=Os06t0702700-01
Chr06	irgsp1_rep	CDS	29666180	29666272	.	-	0	Parent=Os06t0702700-01
Chr06	irgsp1_rep	CDS	29665891	29665974	.	-	0	Parent=Os06t0702700-01
Chr06	irgsp1_rep	CDS	29665524	29665688	.	-	0	Parent=Os06t0702700-01
Chr06	irgsp1_rep	three_prime_UTR	29665362	29665523	.	-	.	Parent=Os06t0702700-01
Chr06	irgsp1_rep	mRNA	29670439	29673498	.	+	.	ID=Os06t0702800-01;Name=Os06t0702800-01;Locus_id=Os06g0702800;Note=Conserved hypothetical protein.;Transcript_evidence=AK073948 (DDBJ%2C Best hit);ORF_evidence=B8B259 (UniProt);NIAS_FLcDNA=J033072H04;Expression=AK073948;TENOR=Os06t0702800-01;KEGG=Os06t0702800-01
Chr06	irgsp1_rep	five_prime_UTR	29670439	29670625	.	+	.	Parent=Os06t0702800-01
Chr06	irgsp1_rep	five_prime_UTR	29670745	29670842	.	+	.	Parent=Os06t0702800-01
Chr06	irgsp1_rep	CDS	29670843	29670898	.	+	0	Parent=Os06t0702800-01
Chr06	irgsp1_rep	CDS	29671291	29671455	.	+	1	Parent=Os06t0702800-01
Chr06	irgsp1_rep	CDS	29672070	29672147	.	+	1	Parent=Os06t0702800-01
Chr06	irgsp1_rep	CDS	29672254	29672533	.	+	1	Parent=Os06t0702800-01
Chr06	irgsp1_rep	CDS	29672710	29673098	.	+	0	Parent=Os06t0702800-01
Chr06	irgsp1_rep	CDS	29673198	29673327	.	+	1	Parent=Os06t0702800-01
Chr06	irgsp1_rep	three_prime_UTR	29673328	29673498	.	+	.	Parent=Os06t0702800-01
Chr06	irgsp1_rep	mRNA	29675121	29678081	.	-	.	ID=Os06t0703000-01;Name=Os06t0703000-01;Locus_id=Os06g0703000;CGSNL Gene Symbol=RLCK217;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 217;Oryzabase Gene Symbol Synonym(s)=OsRLCK217;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 217;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK072944 (DDBJ%2C Best hit);ORF_evidence=NP_001150204.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023150L12;Oryzabase=18913;Expression=AK072944;TENOR=Os06t0703000-01;KEGG=Os06t0703000-01
Chr06	irgsp1_rep	five_prime_UTR	29677846	29678081	.	-	.	Parent=Os06t0703000-01
Chr06	irgsp1_rep	CDS	29677773	29677845	.	-	0	Parent=Os06t0703000-01
Chr06	irgsp1_rep	CDS	29676932	29677248	.	-	2	Parent=Os06t0703000-01
Chr06	irgsp1_rep	CDS	29676516	29676651	.	-	0	Parent=Os06t0703000-01
Chr06	irgsp1_rep	CDS	29676261	29676394	.	-	2	Parent=Os06t0703000-01
Chr06	irgsp1_rep	CDS	29675163	29675711	.	-	0	Parent=Os06t0703000-01
Chr06	irgsp1_rep	three_prime_UTR	29675121	29675162	.	-	.	Parent=Os06t0703000-01
Chr06	irgsp1_rep	mRNA	29679418	29682499	.	-	.	ID=Os06t0703200-01;Name=Os06t0703200-01;Locus_id=Os06g0703200;Note=Disease resistance protein domain containing protein.;Transcript_evidence=AK073053 (DDBJ%2C Best hit);ORF_evidence=A3BF59 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J033004E24;TENOR=Os06t0703200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	29679875	29682499	.	-	0	Parent=Os06t0703200-01
Chr06	irgsp1_rep	three_prime_UTR	29679836	29679874	.	-	.	Parent=Os06t0703200-01
Chr06	irgsp1_rep	three_prime_UTR	29679418	29679730	.	-	.	Parent=Os06t0703200-01
Chr06	irgsp1_rep	mRNA	29696560	29702347	.	+	.	ID=Os06t0703300-01;Name=Os06t0703300-01;Locus_id=Os06g0703300;Note=Hypothetical conserved gene.;Transcript_evidence=AK106736 (DDBJ%2C Best hit);ORF_evidence=Q5Z820 (UniProt);NIAS_FLcDNA=002-115-A05;Expression=AK106736;TENOR=Os06t0703300-01;KEGG=Os06t0703300-01
Chr06	irgsp1_rep	five_prime_UTR	29696560	29696737	.	+	.	Parent=Os06t0703300-01
Chr06	irgsp1_rep	CDS	29696738	29697106	.	+	0	Parent=Os06t0703300-01
Chr06	irgsp1_rep	CDS	29697238	29697523	.	+	0	Parent=Os06t0703300-01
Chr06	irgsp1_rep	CDS	29700909	29702191	.	+	2	Parent=Os06t0703300-01
Chr06	irgsp1_rep	three_prime_UTR	29702192	29702347	.	+	.	Parent=Os06t0703300-01
Chr06	irgsp1_rep	mRNA	29696580	29703207	.	+	.	ID=Os06t0703300-02;Name=Os06t0703300-02;Locus_id=Os06g0703300;Note=Protein of unknown function DUF594 family protein.;Transcript_evidence=AK105426 (DDBJ%2C Best hit),AK102730 (DDBJ%2C Best hit);ORF_evidence=B9FQS2 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);NIAS_FLcDNA=001-124-C11,J033105P14;TENOR=Os06t0703300-02
Chr06	irgsp1_rep	five_prime_UTR	29696580	29696737	.	+	.	Parent=Os06t0703300-02
Chr06	irgsp1_rep	CDS	29696738	29697106	.	+	0	Parent=Os06t0703300-02
Chr06	irgsp1_rep	CDS	29697238	29697523	.	+	0	Parent=Os06t0703300-02
Chr06	irgsp1_rep	CDS	29700909	29702182	.	+	2	Parent=Os06t0703300-02
Chr06	irgsp1_rep	CDS	29702400	29702906	.	+	0	Parent=Os06t0703300-02
Chr06	irgsp1_rep	three_prime_UTR	29702907	29703207	.	+	.	Parent=Os06t0703300-02
Chr06	irgsp1_rep	mRNA	29700925	29702215	.	-	.	ID=Os06t0703400-01;Name=Os06t0703400-01;Locus_id=Os06g0703400;Note=Hypothetical protein.;Transcript_evidence=AK107025 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-121-A05;Expression=AK107025;TENOR=Os06t0703400-01;KEGG=Os06t0703400-01
Chr06	irgsp1_rep	five_prime_UTR	29701726	29702215	.	-	.	Parent=Os06t0703400-01
Chr06	irgsp1_rep	CDS	29701135	29701725	.	-	0	Parent=Os06t0703400-01
Chr06	irgsp1_rep	three_prime_UTR	29700925	29701134	.	-	.	Parent=Os06t0703400-01
Chr06	irgsp1_rep	mRNA	29703558	29708687	.	-	.	ID=Os06t0703500-01;Name=Os06t0703500-01;Locus_id=Os06g0703500;CGSNL Gene Symbol=SPL12;CGSNL Gene Name=RICE SQUAMOSA PROMOTER-BINDING-LIKE 12;Oryzabase Gene Symbol Synonym(s)=OsSPL12%2C DLN176%2C OsDLN176;Oryzabase Gene Name Synonym(s)=Squamosa promoter-binding-like protein 12%2C SQUAMOSA Promoter-Binding Protein-Like 12a%2C DLN repressor 176%2C DLN motif protein 176;Note=Similar to SBP-domain protein 5 (Fragment).;Transcript_evidence=AK102136 (DDBJ%2C Best hit);ORF_evidence=Q5Z818 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Transcription factor%2C SBP-box (IPR004333);NIAS_FLcDNA=J033085H14;Oryzabase=6895;Expression=AK102136;TENOR=Os06t0703500-01;KEGG=Os06t0703500-01
Chr06	irgsp1_rep	five_prime_UTR	29708505	29708687	.	-	.	Parent=Os06t0703500-01
Chr06	irgsp1_rep	five_prime_UTR	29707865	29707903	.	-	.	Parent=Os06t0703500-01
Chr06	irgsp1_rep	five_prime_UTR	29707329	29707594	.	-	.	Parent=Os06t0703500-01
Chr06	irgsp1_rep	five_prime_UTR	29707061	29707113	.	-	.	Parent=Os06t0703500-01
Chr06	irgsp1_rep	CDS	29706384	29707060	.	-	0	Parent=Os06t0703500-01
Chr06	irgsp1_rep	CDS	29705999	29706135	.	-	1	Parent=Os06t0703500-01
Chr06	irgsp1_rep	CDS	29705354	29705623	.	-	2	Parent=Os06t0703500-01
Chr06	irgsp1_rep	CDS	29703831	29704174	.	-	2	Parent=Os06t0703500-01
Chr06	irgsp1_rep	three_prime_UTR	29703558	29703830	.	-	.	Parent=Os06t0703500-01
Chr06	irgsp1_rep	mRNA	29703626	29708260	.	-	.	ID=Os06t0703500-02;Name=Os06t0703500-02;Locus_id=Os06g0703500;CGSNL Gene Symbol=SPL12;CGSNL Gene Name=RICE SQUAMOSA PROMOTER-BINDING-LIKE 12;Oryzabase Gene Symbol Synonym(s)=OsSPL12%2C DLN176%2C OsDLN176;Oryzabase Gene Name Synonym(s)=Squamosa promoter-binding-like protein 12%2C SQUAMOSA Promoter-Binding Protein-Like 12a%2C DLN repressor 176%2C DLN motif protein 176;Note=Similar to SBP-domain protein 5 (Fragment).;Transcript_evidence=AK073179 (DDBJ%2C Best hit);ORF_evidence=Q5Z818 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Transcription factor%2C SBP-box (IPR004333);NIAS_FLcDNA=J033004F21;Oryzabase=6895;Expression=AK073179;TENOR=Os06t0703500-02;KEGG=Os06t0703500-02
Chr06	irgsp1_rep	five_prime_UTR	29708016	29708260	.	-	.	Parent=Os06t0703500-02
Chr06	irgsp1_rep	five_prime_UTR	29707329	29707903	.	-	.	Parent=Os06t0703500-02
Chr06	irgsp1_rep	five_prime_UTR	29707061	29707113	.	-	.	Parent=Os06t0703500-02
Chr06	irgsp1_rep	CDS	29706384	29707060	.	-	0	Parent=Os06t0703500-02
Chr06	irgsp1_rep	CDS	29705999	29706135	.	-	1	Parent=Os06t0703500-02
Chr06	irgsp1_rep	CDS	29705354	29705623	.	-	2	Parent=Os06t0703500-02
Chr06	irgsp1_rep	CDS	29703831	29704174	.	-	2	Parent=Os06t0703500-02
Chr06	irgsp1_rep	three_prime_UTR	29703626	29703830	.	-	.	Parent=Os06t0703500-02
Chr06	irgsp1_rep	mRNA	29703628	29707000	.	-	.	ID=Os06t0703500-03;Name=Os06t0703500-03;Locus_id=Os06g0703500;CGSNL Gene Symbol=SPL12;CGSNL Gene Name=RICE SQUAMOSA PROMOTER-BINDING-LIKE 12;Oryzabase Gene Symbol Synonym(s)=OsSPL12%2C DLN176%2C OsDLN176;Oryzabase Gene Name Synonym(s)=Squamosa promoter-binding-like protein 12%2C SQUAMOSA Promoter-Binding Protein-Like 12a%2C DLN repressor 176%2C DLN motif protein 176;Note=Similar to Squamosa promoter-binding-like protein 12.;Transcript_evidence=AK061641 (DDBJ%2C Best hit);ORF_evidence=Q5Z818 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Transcription factor%2C SBP-box (IPR004333);NIAS_FLcDNA=001-036-B03;Oryzabase=6895;Expression=AK061641;TENOR=Os06t0703500-03;KEGG=Os06t0703500-03
Chr06	irgsp1_rep	CDS	29706384	29707000	.	-	0	Parent=Os06t0703500-03
Chr06	irgsp1_rep	CDS	29705999	29706135	.	-	1	Parent=Os06t0703500-03
Chr06	irgsp1_rep	CDS	29705354	29705623	.	-	2	Parent=Os06t0703500-03
Chr06	irgsp1_rep	CDS	29703831	29704174	.	-	2	Parent=Os06t0703500-03
Chr06	irgsp1_rep	three_prime_UTR	29703628	29703830	.	-	.	Parent=Os06t0703500-03
Chr06	irgsp1_rep	mRNA	29703852	29704214	.	+	.	ID=Os06t0703550-00;Name=Os06t0703550-00;Locus_id=Os06g0703550;Note=Hypothetical protein.;Transcript_evidence=EU949434 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0703550-00
Chr06	irgsp1_rep	five_prime_UTR	29703852	29703872	.	+	.	Parent=Os06t0703550-00
Chr06	irgsp1_rep	CDS	29703873	29704097	.	+	0	Parent=Os06t0703550-00
Chr06	irgsp1_rep	three_prime_UTR	29704098	29704214	.	+	.	Parent=Os06t0703550-00
Chr06	irgsp1_rep	mRNA	29711342	29712615	.	-	.	ID=Os06t0703600-01;Name=Os06t0703600-01;Locus_id=Os06g0703600;Note=Similar to 26S proteasome non-ATPase regulatory subunit 14 (26S proteasome regulatory subunit rpn11).;Transcript_evidence=AK110999 (DDBJ%2C Best hit);ORF_evidence=B6TKH5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Mov34/MPN/PAD-1 (IPR000555);NIAS_FLcDNA=002-174-E09;Expression=AK110999;TENOR=Os06t0703600-01;KEGG=Os06t0703600-01
Chr06	irgsp1_rep	five_prime_UTR	29712466	29712615	.	-	.	Parent=Os06t0703600-01
Chr06	irgsp1_rep	CDS	29711539	29712465	.	-	0	Parent=Os06t0703600-01
Chr06	irgsp1_rep	three_prime_UTR	29711342	29711538	.	-	.	Parent=Os06t0703600-01
Chr06	irgsp1_rep	mRNA	29711579	29712715	.	+	.	ID=Os06t0703700-01;Name=Os06t0703700-01;Locus_id=Os06g0703700;Note=Hypothetical protein.;Transcript_evidence=AK112072 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-120-G01;TENOR=Os06t0703700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	29711579	29711580	.	+	.	Parent=Os06t0703700-01
Chr06	irgsp1_rep	CDS	29711581	29712546	.	+	0	Parent=Os06t0703700-01
Chr06	irgsp1_rep	three_prime_UTR	29712547	29712715	.	+	.	Parent=Os06t0703700-01
Chr06	irgsp1_rep	mRNA	29713469	29716973	.	+	.	ID=Os06t0703800-01;Name=Os06t0703800-01;Locus_id=Os06g0703800;Note=Activator of Hsp90 ATPase%2C N-terminal domain containing protein.;Transcript_evidence=AK066056 (DDBJ%2C Best hit);ORF_evidence=D2E9R5 (UniProt);GO=Cellular Component: cytoplasm (GO:0005737),Molecular Function: ATPase activator activity (GO:0001671),Molecular Function: chaperone binding (GO:0051087);InterPro=Activator of Hsp90 ATPase%2C N-terminal (IPR015310);NIAS_FLcDNA=J013052F01;Expression=AK066056;TENOR=Os06t0703800-01;KEGG=Os06t0703800-01
Chr06	irgsp1_rep	five_prime_UTR	29713469	29713515	.	+	.	Parent=Os06t0703800-01
Chr06	irgsp1_rep	CDS	29713516	29713680	.	+	0	Parent=Os06t0703800-01
Chr06	irgsp1_rep	CDS	29714522	29714575	.	+	0	Parent=Os06t0703800-01
Chr06	irgsp1_rep	CDS	29714682	29714762	.	+	0	Parent=Os06t0703800-01
Chr06	irgsp1_rep	CDS	29716068	29716137	.	+	0	Parent=Os06t0703800-01
Chr06	irgsp1_rep	CDS	29716222	29716310	.	+	2	Parent=Os06t0703800-01
Chr06	irgsp1_rep	CDS	29716477	29716611	.	+	0	Parent=Os06t0703800-01
Chr06	irgsp1_rep	three_prime_UTR	29716612	29716973	.	+	.	Parent=Os06t0703800-01
Chr06	irgsp1_rep	mRNA	29723508	29727074	.	+	.	ID=Os06t0703900-01;Name=Os06t0703900-01;Locus_id=Os06g0703900;RAP-DB Gene Symbol Synonym(s)=OsPHR4;RAP-DB Gene Name Synonym(s)=PHOSPHATE STARVATION RESPONSE 4;CGSNL Gene Symbol=PHR4;CGSNL Gene Name=PHOSPHATE STARVATION RESPONSE 4;Oryzabase Gene Symbol Synonym(s)=OsPHR4%2C Os-PHR4;Oryzabase Gene Name Synonym(s)=Phosphate Starvation Response4%2C PHOSPHATE RESPONSE4;Note=MYB-CC domain containing transcription factor%2C Positive regulation of Pi-starvation signaling and Pi-homeostasis;Transcript_evidence=AK067950;ORF_evidence=Q5Z811;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeodomain-like (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930),Myb domain%2C plants (IPR006447),MYB-CC type transcription factor%2C LHEQLE-containing domain (IPR025756);NIAS_FLcDNA=J013127L15;Manual Curation=December 2%2C 2016;Literature_PMID=27878661;Oryzabase=21574;Expression=AK067950;TENOR=Os06t0703900-01;KEGG=Os06t0703900-01
Chr06	irgsp1_rep	five_prime_UTR	29723508	29723720	.	+	.	Parent=Os06t0703900-01
Chr06	irgsp1_rep	five_prime_UTR	29724722	29724782	.	+	.	Parent=Os06t0703900-01
Chr06	irgsp1_rep	CDS	29724783	29725448	.	+	0	Parent=Os06t0703900-01
Chr06	irgsp1_rep	CDS	29725542	29725755	.	+	0	Parent=Os06t0703900-01
Chr06	irgsp1_rep	CDS	29725848	29725924	.	+	2	Parent=Os06t0703900-01
Chr06	irgsp1_rep	CDS	29726033	29726072	.	+	0	Parent=Os06t0703900-01
Chr06	irgsp1_rep	CDS	29726155	29726224	.	+	2	Parent=Os06t0703900-01
Chr06	irgsp1_rep	CDS	29726320	29726389	.	+	1	Parent=Os06t0703900-01
Chr06	irgsp1_rep	CDS	29726648	29726950	.	+	0	Parent=Os06t0703900-01
Chr06	irgsp1_rep	three_prime_UTR	29726951	29727074	.	+	.	Parent=Os06t0703900-01
Chr06	irgsp1_rep	mRNA	29723582	29727074	.	+	.	ID=Os06t0703900-02;Name=Os06t0703900-02;Locus_id=Os06g0703900;CGSNL Gene Symbol=PHR4;CGSNL Gene Name=PHOSPHATE STARVATION RESPONSE 4;Oryzabase Gene Symbol Synonym(s)=OsPHR4%2C Os-PHR4;Oryzabase Gene Name Synonym(s)=Phosphate Starvation Response4%2C PHOSPHATE RESPONSE4;Note=Homeodomain-like containing protein.;Transcript_evidence=AK060648 (DDBJ%2C Best hit);ORF_evidence=B8B262 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=001-027-G12;Oryzabase=21574;Expression=AK060648;TENOR=Os06t0703900-02;KEGG=Os06t0703900-02
Chr06	irgsp1_rep	five_prime_UTR	29723582	29723720	.	+	.	Parent=Os06t0703900-02
Chr06	irgsp1_rep	five_prime_UTR	29724722	29724782	.	+	.	Parent=Os06t0703900-02
Chr06	irgsp1_rep	CDS	29724783	29725448	.	+	0	Parent=Os06t0703900-02
Chr06	irgsp1_rep	CDS	29725542	29725755	.	+	0	Parent=Os06t0703900-02
Chr06	irgsp1_rep	CDS	29725848	29725924	.	+	2	Parent=Os06t0703900-02
Chr06	irgsp1_rep	CDS	29726033	29726072	.	+	0	Parent=Os06t0703900-02
Chr06	irgsp1_rep	CDS	29726155	29726224	.	+	2	Parent=Os06t0703900-02
Chr06	irgsp1_rep	CDS	29726320	29726389	.	+	1	Parent=Os06t0703900-02
Chr06	irgsp1_rep	CDS	29726648	29726950	.	+	0	Parent=Os06t0703900-02
Chr06	irgsp1_rep	three_prime_UTR	29726951	29727074	.	+	.	Parent=Os06t0703900-02
Chr06	irgsp1_rep	mRNA	29727335	29731920	.	+	.	ID=Os06t0704000-01;Name=Os06t0704000-01;Locus_id=Os06g0704000;Note=Protein of unknown function DUF659 domain containing protein.;Transcript_evidence=AK073579 (DDBJ%2C Best hit);ORF_evidence=B8B263 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Domain of unknown function DUF659 (IPR007021),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J033048H06;Expression=AK073579;TENOR=Os06t0704000-01;KEGG=Os06t0704000-01
Chr06	irgsp1_rep	five_prime_UTR	29727335	29727515	.	+	.	Parent=Os06t0704000-01
Chr06	irgsp1_rep	CDS	29727516	29727536	.	+	0	Parent=Os06t0704000-01
Chr06	irgsp1_rep	CDS	29728711	29728791	.	+	0	Parent=Os06t0704000-01
Chr06	irgsp1_rep	CDS	29729044	29730601	.	+	0	Parent=Os06t0704000-01
Chr06	irgsp1_rep	CDS	29731359	29731672	.	+	2	Parent=Os06t0704000-01
Chr06	irgsp1_rep	three_prime_UTR	29731673	29731920	.	+	.	Parent=Os06t0704000-01
Chr06	irgsp1_rep	mRNA	29733805	29737188	.	+	.	ID=Os06t0704100-01;Name=Os06t0704100-01;Locus_id=Os06g0704100;Note=Protein of unknown function DUF547 domain containing protein.;Transcript_evidence=AK103758 (DDBJ%2C Best hit);ORF_evidence=E4MVN4 (UniProt);InterPro=Domain of unknown function DUF547 (IPR006869);NIAS_FLcDNA=J033143F04;Expression=AK103758;TENOR=Os06t0704100-01;KEGG=Os06t0704100-01
Chr06	irgsp1_rep	five_prime_UTR	29733805	29733955	.	+	.	Parent=Os06t0704100-01
Chr06	irgsp1_rep	CDS	29733956	29734060	.	+	0	Parent=Os06t0704100-01
Chr06	irgsp1_rep	CDS	29734150	29734263	.	+	0	Parent=Os06t0704100-01
Chr06	irgsp1_rep	CDS	29734349	29734561	.	+	0	Parent=Os06t0704100-01
Chr06	irgsp1_rep	CDS	29734868	29735358	.	+	0	Parent=Os06t0704100-01
Chr06	irgsp1_rep	CDS	29735554	29735653	.	+	1	Parent=Os06t0704100-01
Chr06	irgsp1_rep	CDS	29735736	29735795	.	+	0	Parent=Os06t0704100-01
Chr06	irgsp1_rep	CDS	29735956	29736048	.	+	0	Parent=Os06t0704100-01
Chr06	irgsp1_rep	CDS	29736150	29736269	.	+	0	Parent=Os06t0704100-01
Chr06	irgsp1_rep	CDS	29736385	29736705	.	+	0	Parent=Os06t0704100-01
Chr06	irgsp1_rep	three_prime_UTR	29736706	29736743	.	+	.	Parent=Os06t0704100-01
Chr06	irgsp1_rep	three_prime_UTR	29736856	29737188	.	+	.	Parent=Os06t0704100-01
Chr06	irgsp1_rep	mRNA	29737266	29738301	.	-	.	ID=Os06t0704200-01;Name=Os06t0704200-01;Locus_id=Os06g0704200;Note=Conserved hypothetical protein.;Transcript_evidence=AK241846 (DDBJ%2C Best hit);ORF_evidence=Q5Z808 (UniProt);NIAS_FLcDNA=J065214I09;TENOR=Os06t0704200-01;KEGG=Os06t0704200-01
Chr06	irgsp1_rep	CDS	29738184	29738301	.	-	0	Parent=Os06t0704200-01
Chr06	irgsp1_rep	CDS	29737968	29738088	.	-	2	Parent=Os06t0704200-01
Chr06	irgsp1_rep	CDS	29737809	29737853	.	-	1	Parent=Os06t0704200-01
Chr06	irgsp1_rep	CDS	29737638	29737695	.	-	1	Parent=Os06t0704200-01
Chr06	irgsp1_rep	three_prime_UTR	29737610	29737637	.	-	.	Parent=Os06t0704200-01
Chr06	irgsp1_rep	three_prime_UTR	29737266	29737531	.	-	.	Parent=Os06t0704200-01
Chr06	irgsp1_rep	mRNA	29738880	29742499	.	+	.	ID=Os06t0704300-01;Name=Os06t0704300-01;Locus_id=Os06g0704300;RAP-DB Gene Symbol Synonym(s)=C3H46%2C OsC3H46%2C LIC%2C OsLIC;RAP-DB Gene Name Synonym(s)=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 46%2C Zinc finger CCCH domain-containing protein 46%2C LEAF and TILLER ANGLE INCREASED CONTROLLER;CGSNL Gene Symbol=LIC;CGSNL Gene Name=LEAF AND TILLER ANGLE INCREASED CONTROLLER;Oryzabase Gene Symbol Synonym(s)=OsC3H46%2C C3H46%2C OsLIC;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 46%2C LEAF and TILLER ANGLE INCREASED CONTROLLER;Note=CCCH-type zinc finger protein%2C Negative regulator of the brassinosteroid (BR) response%2C Control of rice architecture via BR signaling;Transcript_evidence=AK107008;ORF_evidence=Q5Z807;GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=002-120-E10;Manual Curation=November 19%2C 2015;Literature_PMID=22570626,18953406;Oryzabase=8612;Expression=AK107008;TENOR=Os06t0704300-01;KEGG=Os06t0704300-01
Chr06	irgsp1_rep	five_prime_UTR	29738880	29739097	.	+	.	Parent=Os06t0704300-01
Chr06	irgsp1_rep	CDS	29739098	29739141	.	+	0	Parent=Os06t0704300-01
Chr06	irgsp1_rep	CDS	29739259	29739493	.	+	1	Parent=Os06t0704300-01
Chr06	irgsp1_rep	CDS	29739596	29739684	.	+	0	Parent=Os06t0704300-01
Chr06	irgsp1_rep	CDS	29739771	29739869	.	+	1	Parent=Os06t0704300-01
Chr06	irgsp1_rep	CDS	29739966	29740059	.	+	1	Parent=Os06t0704300-01
Chr06	irgsp1_rep	CDS	29740198	29740415	.	+	0	Parent=Os06t0704300-01
Chr06	irgsp1_rep	CDS	29740762	29740868	.	+	1	Parent=Os06t0704300-01
Chr06	irgsp1_rep	CDS	29741199	29741373	.	+	2	Parent=Os06t0704300-01
Chr06	irgsp1_rep	CDS	29741497	29741560	.	+	1	Parent=Os06t0704300-01
Chr06	irgsp1_rep	CDS	29741929	29741976	.	+	0	Parent=Os06t0704300-01
Chr06	irgsp1_rep	three_prime_UTR	29741977	29742092	.	+	.	Parent=Os06t0704300-01
Chr06	irgsp1_rep	three_prime_UTR	29742177	29742499	.	+	.	Parent=Os06t0704300-01
Chr06	irgsp1_rep	mRNA	29744334	29749490	.	+	.	ID=Os06t0704400-01;Name=Os06t0704400-01;Locus_id=Os06g0704400;Note=Transposase%2C MuDR%2C plant domain containing protein.;Transcript_evidence=AK100489 (DDBJ%2C Best hit);ORF_evidence=B9FQS9 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Transposase%2C MuDR%2C plant (IPR004332),Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);NIAS_FLcDNA=J023098D08;Expression=AK100489;TENOR=Os06t0704400-01;KEGG=Os06t0704400-01
Chr06	irgsp1_rep	five_prime_UTR	29744334	29744461	.	+	.	Parent=Os06t0704400-01
Chr06	irgsp1_rep	five_prime_UTR	29746674	29746728	.	+	.	Parent=Os06t0704400-01
Chr06	irgsp1_rep	CDS	29746729	29747892	.	+	0	Parent=Os06t0704400-01
Chr06	irgsp1_rep	CDS	29747974	29749050	.	+	0	Parent=Os06t0704400-01
Chr06	irgsp1_rep	CDS	29749127	29749300	.	+	0	Parent=Os06t0704400-01
Chr06	irgsp1_rep	three_prime_UTR	29749301	29749490	.	+	.	Parent=Os06t0704400-01
Chr06	irgsp1_rep	mRNA	29744334	29750632	.	+	.	ID=Os06t0704400-02;Name=Os06t0704400-02;Locus_id=Os06g0704400;Note=Transposase%2C MuDR%2C plant domain containing protein.;Transcript_evidence=AK069477 (DDBJ%2C Best hit);ORF_evidence=B9FQS9 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Transposase%2C MuDR%2C plant (IPR004332),Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);NIAS_FLcDNA=J023019I22;Expression=AK069477;TENOR=Os06t0704400-02;KEGG=Os06t0704400-02
Chr06	irgsp1_rep	five_prime_UTR	29744334	29744461	.	+	.	Parent=Os06t0704400-02
Chr06	irgsp1_rep	five_prime_UTR	29746674	29746728	.	+	.	Parent=Os06t0704400-02
Chr06	irgsp1_rep	CDS	29746729	29747892	.	+	0	Parent=Os06t0704400-02
Chr06	irgsp1_rep	CDS	29747974	29749050	.	+	0	Parent=Os06t0704400-02
Chr06	irgsp1_rep	CDS	29749127	29749300	.	+	0	Parent=Os06t0704400-02
Chr06	irgsp1_rep	three_prime_UTR	29749301	29749615	.	+	.	Parent=Os06t0704400-02
Chr06	irgsp1_rep	three_prime_UTR	29749718	29749779	.	+	.	Parent=Os06t0704400-02
Chr06	irgsp1_rep	three_prime_UTR	29750379	29750632	.	+	.	Parent=Os06t0704400-02
Chr06	irgsp1_rep	mRNA	29748303	29749459	.	+	.	ID=Os06t0704400-03;Name=Os06t0704400-03;Locus_id=Os06g0704400;Note=Similar to cDNA clone:001-132-E04%2C full insert sequence.;Transcript_evidence=AK062169 (DDBJ%2C Best hit);ORF_evidence=B7F4U2 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527);NIAS_FLcDNA=001-046-C01;Expression=AK062169;TENOR=Os06t0704400-03;KEGG=Os06t0704400-03
Chr06	irgsp1_rep	five_prime_UTR	29748303	29748303	.	+	.	Parent=Os06t0704400-03
Chr06	irgsp1_rep	CDS	29748304	29749050	.	+	0	Parent=Os06t0704400-03
Chr06	irgsp1_rep	CDS	29749127	29749300	.	+	0	Parent=Os06t0704400-03
Chr06	irgsp1_rep	three_prime_UTR	29749301	29749459	.	+	.	Parent=Os06t0704400-03
Chr06	irgsp1_rep	mRNA	29754512	29755651	.	-	.	ID=Os06t0704450-00;Name=Os06t0704450-00;Locus_id=Os06g0704450;Note=Hypothetical protein.;Transcript_evidence=BT068200 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0704450-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	29755049	29755651	.	-	0	Parent=Os06t0704450-00
Chr06	irgsp1_rep	CDS	29754512	29754961	.	-	0	Parent=Os06t0704450-00
Chr06	irgsp1_rep	mRNA	29754932	29756377	.	+	.	ID=Os06t0704500-01;Name=Os06t0704500-01;Locus_id=Os06g0704500;Oryzabase Gene Name Synonym(s)=Extensin family protein;Note=Leucine-rich repeat%2C plant specific containing protein.;Transcript_evidence=AK105531 (DDBJ%2C Best hit);ORF_evidence=Q5Z8W0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=001-127-G10;Oryzabase=21946;Expression=AK105531;TENOR=Os06t0704500-01;KEGG=Os06t0704500-01
Chr06	irgsp1_rep	CDS	29754932	29756161	.	+	0	Parent=Os06t0704500-01
Chr06	irgsp1_rep	three_prime_UTR	29756162	29756377	.	+	.	Parent=Os06t0704500-01
Chr06	irgsp1_rep	mRNA	29757543	29761819	.	-	.	ID=Os06t0704600-01;Name=Os06t0704600-01;Locus_id=Os06g0704600;Oryzabase Gene Symbol Synonym(s)=ALAD%2C HEMB%2C OsALAD%2C OsHEMB;Oryzabase Gene Name Synonym(s)=5-aminolevulinate dehydrogenase%2C ALA dehydratase%2C porphobilinogen synthase;Note=Similar to Delta-aminolevulinic acid dehydratase (Fragment).;Transcript_evidence=AK101836 (DDBJ%2C Best hit);ORF_evidence=Q5Z8V9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: tetrapyrrole biosynthetic process (GO:0033014),Molecular Function: catalytic activity (GO:0003824),Molecular Function: porphobilinogen synthase activity (GO:0004655),Molecular Function: metal ion binding (GO:0046872);InterPro=Tetrapyrrole biosynthesis%2C porphobilinogen synthase (IPR001731),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J033069C18;Oryzabase=19968;TENOR=Os06t0704600-01
Chr06	irgsp1_rep	five_prime_UTR	29761666	29761819	.	-	.	Parent=Os06t0704600-01
Chr06	irgsp1_rep	five_prime_UTR	29761412	29761418	.	-	.	Parent=Os06t0704600-01
Chr06	irgsp1_rep	CDS	29761121	29761411	.	-	0	Parent=Os06t0704600-01
Chr06	irgsp1_rep	CDS	29760915	29761026	.	-	0	Parent=Os06t0704600-01
Chr06	irgsp1_rep	CDS	29760756	29760829	.	-	2	Parent=Os06t0704600-01
Chr06	irgsp1_rep	CDS	29760500	29760568	.	-	0	Parent=Os06t0704600-01
Chr06	irgsp1_rep	CDS	29760336	29760419	.	-	0	Parent=Os06t0704600-01
Chr06	irgsp1_rep	CDS	29760165	29760234	.	-	0	Parent=Os06t0704600-01
Chr06	irgsp1_rep	CDS	29759442	29759497	.	-	2	Parent=Os06t0704600-01
Chr06	irgsp1_rep	CDS	29759217	29759338	.	-	0	Parent=Os06t0704600-01
Chr06	irgsp1_rep	CDS	29759042	29759113	.	-	1	Parent=Os06t0704600-01
Chr06	irgsp1_rep	CDS	29758869	29758950	.	-	1	Parent=Os06t0704600-01
Chr06	irgsp1_rep	CDS	29758703	29758780	.	-	0	Parent=Os06t0704600-01
Chr06	irgsp1_rep	CDS	29757785	29757955	.	-	0	Parent=Os06t0704600-01
Chr06	irgsp1_rep	three_prime_UTR	29757543	29757784	.	-	.	Parent=Os06t0704600-01
Chr06	irgsp1_rep	mRNA	29757543	29761724	.	-	.	ID=Os06t0704600-02;Name=Os06t0704600-02;Locus_id=Os06g0704600;Oryzabase Gene Symbol Synonym(s)=ALAD%2C HEMB%2C OsALAD%2C OsHEMB;Oryzabase Gene Name Synonym(s)=5-aminolevulinate dehydrogenase%2C ALA dehydratase%2C porphobilinogen synthase;Note=Similar to Delta-aminolevulinic acid dehydratase (Fragment).;Transcript_evidence=AK065784 (DDBJ%2C Best hit),AK119551 (DDBJ%2C Best hit);ORF_evidence=Q5Z8V9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: tetrapyrrole biosynthetic process (GO:0033014),Molecular Function: catalytic activity (GO:0003824),Molecular Function: porphobilinogen synthase activity (GO:0004655),Molecular Function: metal ion binding (GO:0046872);InterPro=Tetrapyrrole biosynthesis%2C porphobilinogen synthase (IPR001731),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J013042O12,001-207-E09;Oryzabase=19968;TENOR=Os06t0704600-02
Chr06	irgsp1_rep	five_prime_UTR	29761666	29761724	.	-	.	Parent=Os06t0704600-02
Chr06	irgsp1_rep	five_prime_UTR	29761412	29761418	.	-	.	Parent=Os06t0704600-02
Chr06	irgsp1_rep	CDS	29761121	29761411	.	-	0	Parent=Os06t0704600-02
Chr06	irgsp1_rep	CDS	29760915	29761026	.	-	0	Parent=Os06t0704600-02
Chr06	irgsp1_rep	CDS	29760756	29760829	.	-	2	Parent=Os06t0704600-02
Chr06	irgsp1_rep	CDS	29760500	29760568	.	-	0	Parent=Os06t0704600-02
Chr06	irgsp1_rep	CDS	29760336	29760419	.	-	0	Parent=Os06t0704600-02
Chr06	irgsp1_rep	CDS	29760165	29760234	.	-	0	Parent=Os06t0704600-02
Chr06	irgsp1_rep	CDS	29759442	29759497	.	-	2	Parent=Os06t0704600-02
Chr06	irgsp1_rep	CDS	29759217	29759338	.	-	0	Parent=Os06t0704600-02
Chr06	irgsp1_rep	CDS	29759042	29759113	.	-	1	Parent=Os06t0704600-02
Chr06	irgsp1_rep	CDS	29758869	29758950	.	-	1	Parent=Os06t0704600-02
Chr06	irgsp1_rep	CDS	29758703	29758780	.	-	0	Parent=Os06t0704600-02
Chr06	irgsp1_rep	CDS	29757785	29757955	.	-	0	Parent=Os06t0704600-02
Chr06	irgsp1_rep	three_prime_UTR	29757543	29757784	.	-	.	Parent=Os06t0704600-02
Chr06	irgsp1_rep	mRNA	29762530	29766745	.	-	.	ID=Os06t0704700-01;Name=Os06t0704700-01;Locus_id=Os06g0704700;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK120907 (DDBJ%2C Best hit);ORF_evidence=NP_173116.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NmrA-like (IPR008030),Galactose-binding domain-like (IPR008979),NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (IPR013857),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023031L08;Expression=AK120907;TENOR=Os06t0704700-01;KEGG=Os06t0704700-01
Chr06	irgsp1_rep	five_prime_UTR	29766697	29766745	.	-	.	Parent=Os06t0704700-01
Chr06	irgsp1_rep	CDS	29765974	29766696	.	-	0	Parent=Os06t0704700-01
Chr06	irgsp1_rep	CDS	29765190	29765402	.	-	0	Parent=Os06t0704700-01
Chr06	irgsp1_rep	CDS	29764874	29765078	.	-	0	Parent=Os06t0704700-01
Chr06	irgsp1_rep	CDS	29764679	29764754	.	-	2	Parent=Os06t0704700-01
Chr06	irgsp1_rep	CDS	29764435	29764570	.	-	1	Parent=Os06t0704700-01
Chr06	irgsp1_rep	CDS	29764219	29764323	.	-	0	Parent=Os06t0704700-01
Chr06	irgsp1_rep	CDS	29764037	29764114	.	-	0	Parent=Os06t0704700-01
Chr06	irgsp1_rep	CDS	29763651	29763740	.	-	0	Parent=Os06t0704700-01
Chr06	irgsp1_rep	CDS	29763498	29763563	.	-	0	Parent=Os06t0704700-01
Chr06	irgsp1_rep	CDS	29763205	29763261	.	-	0	Parent=Os06t0704700-01
Chr06	irgsp1_rep	CDS	29763039	29763116	.	-	0	Parent=Os06t0704700-01
Chr06	irgsp1_rep	CDS	29762912	29762959	.	-	0	Parent=Os06t0704700-01
Chr06	irgsp1_rep	CDS	29762729	29762800	.	-	0	Parent=Os06t0704700-01
Chr06	irgsp1_rep	three_prime_UTR	29762530	29762728	.	-	.	Parent=Os06t0704700-01
Chr06	irgsp1_rep	mRNA	29768236	29780664	.	-	.	ID=Os06t0704800-00;Name=Os06t0704800-00;Locus_id=Os06g0704800;CGSNL Gene Symbol=HAC704;CGSNL Gene Name=HISTONE ACETYLTRANSFERASE HAC704;Oryzabase Gene Symbol Synonym(s)=OsHAC704%2C OsKIX_4%2C OsHAC12;Oryzabase Gene Name Synonym(s)=Histone acetyltransferase HAC704%2C KIX domain protein 4;Note=Probable histone acetyltransferase HAC-like 2.;Transcript_evidence=Q5Z8V7 (UniProt);ORF_evidence=Q5Z8V7 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: transcription cofactor activity (GO:0003712),Molecular Function: histone acetyltransferase activity (GO:0004402),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C TAZ-type (IPR000197),Zinc finger%2C ZZ-type (IPR000433),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Histone H3-K56 acetyltransferase%2C RTT109 (IPR013178);Oryzabase=11169;TENOR=Os06t0704800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	29780495	29780664	.	-	0	Parent=Os06t0704800-00
Chr06	irgsp1_rep	CDS	29780248	29780359	.	-	1	Parent=Os06t0704800-00
Chr06	irgsp1_rep	CDS	29777802	29778009	.	-	0	Parent=Os06t0704800-00
Chr06	irgsp1_rep	CDS	29777156	29777665	.	-	2	Parent=Os06t0704800-00
Chr06	irgsp1_rep	CDS	29773937	29775621	.	-	2	Parent=Os06t0704800-00
Chr06	irgsp1_rep	CDS	29772822	29773100	.	-	0	Parent=Os06t0704800-00
Chr06	irgsp1_rep	CDS	29772354	29772482	.	-	0	Parent=Os06t0704800-00
Chr06	irgsp1_rep	CDS	29772007	29772207	.	-	0	Parent=Os06t0704800-00
Chr06	irgsp1_rep	CDS	29771711	29771853	.	-	0	Parent=Os06t0704800-00
Chr06	irgsp1_rep	CDS	29771163	29771472	.	-	1	Parent=Os06t0704800-00
Chr06	irgsp1_rep	CDS	29770892	29771031	.	-	0	Parent=Os06t0704800-00
Chr06	irgsp1_rep	CDS	29769671	29769749	.	-	1	Parent=Os06t0704800-00
Chr06	irgsp1_rep	CDS	29769331	29769572	.	-	0	Parent=Os06t0704800-00
Chr06	irgsp1_rep	CDS	29768236	29768347	.	-	1	Parent=Os06t0704800-00
Chr06	irgsp1_rep	mRNA	29782084	29784931	.	+	.	ID=Os06t0704900-01;Name=Os06t0704900-01;Locus_id=Os06g0704900;Note=Similar to Cell division-like protein.;Transcript_evidence=AK103054 (DDBJ%2C Best hit);ORF_evidence=NP_001152207.1 (RefSeq);GO=Biological Process: RNA methylation (GO:0001510),Biological Process: methylation (GO:0032259),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Ribosomal RNA methyltransferase RrmJ/FtsJ (IPR002877),Ribosomal RNA large subunit methyltransferase E (IPR015507);NIAS_FLcDNA=J033117I21;Expression=AK103054;TENOR=Os06t0704900-01;KEGG=Os06t0704900-01 (EC:2.1.1.-)
Chr06	irgsp1_rep	five_prime_UTR	29782084	29782220	.	+	.	Parent=Os06t0704900-01
Chr06	irgsp1_rep	CDS	29782221	29782247	.	+	0	Parent=Os06t0704900-01
Chr06	irgsp1_rep	CDS	29782364	29782457	.	+	0	Parent=Os06t0704900-01
Chr06	irgsp1_rep	CDS	29782564	29782613	.	+	2	Parent=Os06t0704900-01
Chr06	irgsp1_rep	CDS	29782699	29782748	.	+	0	Parent=Os06t0704900-01
Chr06	irgsp1_rep	CDS	29782846	29782954	.	+	1	Parent=Os06t0704900-01
Chr06	irgsp1_rep	CDS	29783036	29783096	.	+	0	Parent=Os06t0704900-01
Chr06	irgsp1_rep	CDS	29783192	29783244	.	+	2	Parent=Os06t0704900-01
Chr06	irgsp1_rep	CDS	29783530	29783622	.	+	0	Parent=Os06t0704900-01
Chr06	irgsp1_rep	CDS	29784004	29784067	.	+	0	Parent=Os06t0704900-01
Chr06	irgsp1_rep	CDS	29784302	29784409	.	+	2	Parent=Os06t0704900-01
Chr06	irgsp1_rep	CDS	29784497	29784741	.	+	2	Parent=Os06t0704900-01
Chr06	irgsp1_rep	three_prime_UTR	29784742	29784931	.	+	.	Parent=Os06t0704900-01
Chr06	irgsp1_rep	mRNA	29786520	29788667	.	+	.	ID=Os06t0705000-01;Name=Os06t0705000-01;Locus_id=Os06g0705000;CGSNL Gene Symbol=GMT1;CGSNL Gene Name=GIPC MANNOSYL-TRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=OsGMT1;Oryzabase Gene Name Synonym(s)=GIPC MANNOSYL-TRANSFERASE1;Note=Similar to predicted protein.;Transcript_evidence=AK242204 (DDBJ%2C Best hit);ORF_evidence=XP_002967921.1 (RefSeq);GO=Cellular Component: intrinsic to endoplasmic reticulum membrane (GO:0031227),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=EXTL2%2C alpha-1%2C4-N-acetylhexosaminyltransferase (IPR015338);NIAS_FLcDNA=J075169H23;Oryzabase=22423;TENOR=Os06t0705000-01;KEGG=Os06t0705000-01 (EC:2.4.1.223%2C EC:2.4.1.224)
Chr06	irgsp1_rep	five_prime_UTR	29786520	29786576	.	+	.	Parent=Os06t0705000-01
Chr06	irgsp1_rep	CDS	29786577	29786809	.	+	0	Parent=Os06t0705000-01
Chr06	irgsp1_rep	CDS	29786893	29787295	.	+	1	Parent=Os06t0705000-01
Chr06	irgsp1_rep	CDS	29787534	29787697	.	+	0	Parent=Os06t0705000-01
Chr06	irgsp1_rep	CDS	29787844	29787914	.	+	1	Parent=Os06t0705000-01
Chr06	irgsp1_rep	CDS	29788300	29788460	.	+	2	Parent=Os06t0705000-01
Chr06	irgsp1_rep	three_prime_UTR	29788461	29788667	.	+	.	Parent=Os06t0705000-01
Chr06	irgsp1_rep	mRNA	29789098	29790616	.	+	.	ID=Os06t0705100-01;Name=Os06t0705100-01;Locus_id=Os06g0705100;Note=Similar to Thylakoid lumenal 13.3 kDa protein (P16.5) (Fragment).;Transcript_evidence=AK119552 (DDBJ%2C Best hit),AK120468 (DDBJ%2C Best hit);ORF_evidence=B6SU36 (UniProt);NIAS_FLcDNA=001-207-H01,J013109D14;TENOR=Os06t0705100-01
Chr06	irgsp1_rep	five_prime_UTR	29789098	29789245	.	+	.	Parent=Os06t0705100-01
Chr06	irgsp1_rep	CDS	29789246	29789642	.	+	0	Parent=Os06t0705100-01
Chr06	irgsp1_rep	CDS	29789754	29789893	.	+	2	Parent=Os06t0705100-01
Chr06	irgsp1_rep	CDS	29790005	29790077	.	+	0	Parent=Os06t0705100-01
Chr06	irgsp1_rep	CDS	29790220	29790329	.	+	2	Parent=Os06t0705100-01
Chr06	irgsp1_rep	three_prime_UTR	29790330	29790616	.	+	.	Parent=Os06t0705100-01
Chr06	irgsp1_rep	mRNA	29789196	29790558	.	+	.	ID=Os06t0705100-02;Name=Os06t0705100-02;Locus_id=Os06g0705100;Note=Similar to Thylakoid lumenal 13.3 kDa protein (P16.5) (Fragment).;Transcript_evidence=AK060157 (DDBJ%2C Best hit);ORF_evidence=B6SU36 (UniProt);NIAS_FLcDNA=006-310-G02;Expression=AK060157;TENOR=Os06t0705100-02;KEGG=Os06t0705100-02
Chr06	irgsp1_rep	five_prime_UTR	29789196	29789245	.	+	.	Parent=Os06t0705100-02
Chr06	irgsp1_rep	CDS	29789246	29789642	.	+	0	Parent=Os06t0705100-02
Chr06	irgsp1_rep	CDS	29789754	29789893	.	+	2	Parent=Os06t0705100-02
Chr06	irgsp1_rep	CDS	29790005	29790077	.	+	0	Parent=Os06t0705100-02
Chr06	irgsp1_rep	CDS	29790220	29790329	.	+	2	Parent=Os06t0705100-02
Chr06	irgsp1_rep	three_prime_UTR	29790330	29790558	.	+	.	Parent=Os06t0705100-02
Chr06	irgsp1_rep	mRNA	29789232	29790631	.	+	.	ID=Os06t0705100-03;Name=Os06t0705100-03;Locus_id=Os06g0705100;Note=Similar to Thylakoid lumenal 13.3 kDa protein (P16.5) (Fragment).;Transcript_evidence=AK060969 (DDBJ%2C Best hit);ORF_evidence=B6SU36 (UniProt);NIAS_FLcDNA=006-202-C07;Expression=AK060969;TENOR=Os06t0705100-03;KEGG=Os06t0705100-03
Chr06	irgsp1_rep	five_prime_UTR	29789232	29789245	.	+	.	Parent=Os06t0705100-03
Chr06	irgsp1_rep	CDS	29789246	29789642	.	+	0	Parent=Os06t0705100-03
Chr06	irgsp1_rep	CDS	29789754	29789893	.	+	2	Parent=Os06t0705100-03
Chr06	irgsp1_rep	CDS	29790005	29790077	.	+	0	Parent=Os06t0705100-03
Chr06	irgsp1_rep	CDS	29790220	29790329	.	+	2	Parent=Os06t0705100-03
Chr06	irgsp1_rep	three_prime_UTR	29790330	29790631	.	+	.	Parent=Os06t0705100-03
Chr06	irgsp1_rep	mRNA	29791163	29795253	.	-	.	ID=Os06t0705200-00;Name=Os06t0705200-00;Locus_id=Os06g0705200;CGSNL Gene Symbol=WAK64;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 64;Oryzabase Gene Symbol Synonym(s)=OsWAK64;Note=Hypothetical conserved gene.;Transcript_evidence=EU953189 (DDBJ);ORF_evidence=Q5Z8V2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=EGF-type aspartate/asparagine hydroxylation site (IPR000152),Protein kinase%2C catalytic domain (IPR000719),Epidermal growth factor-like%2C type 3 (IPR000742),Serine-threonine/tyrosine-protein kinase (IPR001245),EGF-like calcium-binding (IPR001881),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),EGF-like calcium-binding%2C conserved site (IPR018097);Oryzabase=6954;TENOR=Os06t0705200-00;KEGG=Os06t0705200-00
Chr06	irgsp1_rep	CDS	29794377	29795253	.	-	0	Parent=Os06t0705200-00
Chr06	irgsp1_rep	CDS	29793315	29793497	.	-	2	Parent=Os06t0705200-00
Chr06	irgsp1_rep	CDS	29791163	29792325	.	-	2	Parent=Os06t0705200-00
Chr06	irgsp1_rep	mRNA	29791592	29795227	.	+	.	ID=Os06t0705250-00;Name=Os06t0705250-00;Locus_id=Os06g0705250;Note=Hypothetical gene.;Transcript_evidence=EU955465 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0705250-00
Chr06	irgsp1_rep	five_prime_UTR	29791592	29792288	.	+	.	Parent=Os06t0705250-00
Chr06	irgsp1_rep	CDS	29792289	29792336	.	+	0	Parent=Os06t0705250-00
Chr06	irgsp1_rep	CDS	29793335	29793470	.	+	0	Parent=Os06t0705250-00
Chr06	irgsp1_rep	CDS	29794346	29795227	.	+	2	Parent=Os06t0705250-00
Chr06	irgsp1_rep	mRNA	29798173	29804316	.	-	.	ID=Os06t0705300-01;Name=Os06t0705300-01;Locus_id=Os06g0705300;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK121711 (DDBJ%2C Best hit);ORF_evidence=B9FQT6 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J033076O20;TENOR=Os06t0705300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	29804245	29804316	.	-	.	Parent=Os06t0705300-01
Chr06	irgsp1_rep	five_prime_UTR	29803857	29804107	.	-	.	Parent=Os06t0705300-01
Chr06	irgsp1_rep	CDS	29802051	29803856	.	-	0	Parent=Os06t0705300-01
Chr06	irgsp1_rep	three_prime_UTR	29801772	29802050	.	-	.	Parent=Os06t0705300-01
Chr06	irgsp1_rep	three_prime_UTR	29800975	29801675	.	-	.	Parent=Os06t0705300-01
Chr06	irgsp1_rep	three_prime_UTR	29800821	29800898	.	-	.	Parent=Os06t0705300-01
Chr06	irgsp1_rep	three_prime_UTR	29799636	29800368	.	-	.	Parent=Os06t0705300-01
Chr06	irgsp1_rep	three_prime_UTR	29798814	29799281	.	-	.	Parent=Os06t0705300-01
Chr06	irgsp1_rep	three_prime_UTR	29798628	29798711	.	-	.	Parent=Os06t0705300-01
Chr06	irgsp1_rep	three_prime_UTR	29798173	29798467	.	-	.	Parent=Os06t0705300-01
Chr06	irgsp1_rep	mRNA	29798173	29801153	.	-	.	ID=Os06t0705300-02;Name=Os06t0705300-02;Locus_id=Os06g0705300;Note=Similar to plant-specific domain TIGR01589 family protein.;Transcript_evidence=AK064803 (DDBJ%2C Best hit);ORF_evidence=NP_001149236.1 (RefSeq);InterPro=Conserved hypothetical protein CHP01589%2C plant (IPR006476);NIAS_FLcDNA=J013000D12;Expression=AK064803;TENOR=Os06t0705300-02;KEGG=Os06t0705300-02
Chr06	irgsp1_rep	five_prime_UTR	29800975	29801153	.	-	.	Parent=Os06t0705300-02
Chr06	irgsp1_rep	five_prime_UTR	29800845	29800898	.	-	.	Parent=Os06t0705300-02
Chr06	irgsp1_rep	CDS	29800821	29800844	.	-	0	Parent=Os06t0705300-02
Chr06	irgsp1_rep	CDS	29800263	29800368	.	-	0	Parent=Os06t0705300-02
Chr06	irgsp1_rep	CDS	29799636	29799818	.	-	2	Parent=Os06t0705300-02
Chr06	irgsp1_rep	CDS	29798814	29799281	.	-	2	Parent=Os06t0705300-02
Chr06	irgsp1_rep	CDS	29798628	29798711	.	-	2	Parent=Os06t0705300-02
Chr06	irgsp1_rep	CDS	29798463	29798467	.	-	2	Parent=Os06t0705300-02
Chr06	irgsp1_rep	three_prime_UTR	29798173	29798462	.	-	.	Parent=Os06t0705300-02
Chr06	irgsp1_rep	mRNA	29804661	29807002	.	-	.	ID=Os06t0705350-00;Name=Os06t0705350-00;Locus_id=Os06g0705350;Note=Similar to pentatricopeptide (PPR) repeat-containing protein.;Transcript_evidence=BT055332 (DDBJ);ORF_evidence=NP_199702.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os06t0705350-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	29804693	29807002	.	-	0	Parent=Os06t0705350-00
Chr06	irgsp1_rep	three_prime_UTR	29804661	29804692	.	-	.	Parent=Os06t0705350-00
Chr06	irgsp1_rep	mRNA	29807821	29808392	.	+	.	ID=Os06t0705400-01;Name=Os06t0705400-01;Locus_id=Os06g0705400;Oryzabase Gene Symbol Synonym(s)=OsLTP2.6%2C OsLtpII.6;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein 2.6%2C lipid transfer protein 2.6%2C type 2 non-specific lipid transfer protein 6;Note=Hypothetical conserved gene.;Transcript_evidence=AK062493 (DDBJ%2C Best hit);ORF_evidence=C0KHK5 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770);NIAS_FLcDNA=001-103-H09;Oryzabase=13534;Expression=AK062493;TENOR=Os06t0705400-01;KEGG=Os06t0705400-01
Chr06	irgsp1_rep	five_prime_UTR	29807821	29807924	.	+	.	Parent=Os06t0705400-01
Chr06	irgsp1_rep	CDS	29807925	29807975	.	+	0	Parent=Os06t0705400-01
Chr06	irgsp1_rep	CDS	29808111	29808209	.	+	0	Parent=Os06t0705400-01
Chr06	irgsp1_rep	three_prime_UTR	29808210	29808392	.	+	.	Parent=Os06t0705400-01
Chr06	irgsp1_rep	mRNA	29807824	29808449	.	+	.	ID=Os06t0705400-02;Name=Os06t0705400-02;Locus_id=Os06g0705400;Oryzabase Gene Symbol Synonym(s)=OsLTP2.6%2C OsLtpII.6;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein 2.6%2C lipid transfer protein 2.6%2C type 2 non-specific lipid transfer protein 6;Note=Similar to Nonspecific lipid-transfer protein 2P (LTP2P) (Lipid transfer protein 2 isoform 2) (LTP2-2) (7 kDa lipid transfer protein 2).;Transcript_evidence=AK062667 (DDBJ%2C Best hit);ORF_evidence=NP_001149680.1 (RefSeq);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=001-105-F12;Oryzabase=13534;Expression=AK062667;TENOR=Os06t0705400-02;KEGG=Os06t0705400-02
Chr06	irgsp1_rep	five_prime_UTR	29807824	29807924	.	+	.	Parent=Os06t0705400-02
Chr06	irgsp1_rep	CDS	29807925	29808209	.	+	0	Parent=Os06t0705400-02
Chr06	irgsp1_rep	three_prime_UTR	29808210	29808449	.	+	.	Parent=Os06t0705400-02
Chr06	irgsp1_rep	mRNA	29808539	29811842	.	-	.	ID=Os06t0705500-01;Name=Os06t0705500-01;Locus_id=Os06g0705500;Note=Ataxin-2%2C C-terminal domain containing protein.;Transcript_evidence=AK060142 (DDBJ%2C Best hit);ORF_evidence=B8B276 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin system component Cue (IPR003892),Ataxin-2%2C C-terminal (IPR009818);NIAS_FLcDNA=006-309-H01;Expression=AK060142;TENOR=Os06t0705500-01;KEGG=Os06t0705500-01
Chr06	irgsp1_rep	five_prime_UTR	29811710	29811842	.	-	.	Parent=Os06t0705500-01
Chr06	irgsp1_rep	five_prime_UTR	29809876	29809929	.	-	.	Parent=Os06t0705500-01
Chr06	irgsp1_rep	CDS	29809782	29809875	.	-	0	Parent=Os06t0705500-01
Chr06	irgsp1_rep	CDS	29809431	29809705	.	-	2	Parent=Os06t0705500-01
Chr06	irgsp1_rep	CDS	29809046	29809183	.	-	0	Parent=Os06t0705500-01
Chr06	irgsp1_rep	CDS	29808859	29808906	.	-	0	Parent=Os06t0705500-01
Chr06	irgsp1_rep	three_prime_UTR	29808539	29808858	.	-	.	Parent=Os06t0705500-01
Chr06	irgsp1_rep	mRNA	29814603	29816743	.	+	.	ID=Os06t0705600-00;Name=Os06t0705600-00;Locus_id=Os06g0705600;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Oligopeptide transporter domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001058518.2 (RefSeq);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);Oryzabase=23670;TENOR=Os06t0705600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	29814603	29814653	.	+	0	Parent=Os06t0705600-00
Chr06	irgsp1_rep	CDS	29814792	29814891	.	+	0	Parent=Os06t0705600-00
Chr06	irgsp1_rep	CDS	29815006	29815227	.	+	2	Parent=Os06t0705600-00
Chr06	irgsp1_rep	CDS	29815324	29815427	.	+	2	Parent=Os06t0705600-00
Chr06	irgsp1_rep	CDS	29815496	29815872	.	+	0	Parent=Os06t0705600-00
Chr06	irgsp1_rep	CDS	29815954	29816743	.	+	1	Parent=Os06t0705600-00
Chr06	irgsp1_rep	mRNA	29815928	29816719	.	-	.	ID=Os06t0705651-00;Name=Os06t0705651-00;Locus_id=Os06g0705651;Note=Hypothetical protein.;Transcript_evidence=EU955776 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0705651-00
Chr06	irgsp1_rep	CDS	29816054	29816719	.	-	0	Parent=Os06t0705651-00
Chr06	irgsp1_rep	three_prime_UTR	29815928	29816053	.	-	.	Parent=Os06t0705651-00
Chr06	irgsp1_rep	mRNA	29824393	29826498	.	+	.	ID=Os06t0705700-01;Name=Os06t0705700-01;Locus_id=Os06g0705700;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=TGF-beta receptor%2C type I/II extracellular region family protein.;Transcript_evidence=AK119527 (DDBJ%2C Best hit);ORF_evidence=A2YGT5 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=001-203-B05;Oryzabase=23671;Expression=AK119527;TENOR=Os06t0705700-01;KEGG=Os06t0705700-01
Chr06	irgsp1_rep	five_prime_UTR	29824393	29824438	.	+	.	Parent=Os06t0705700-01
Chr06	irgsp1_rep	CDS	29824439	29824489	.	+	0	Parent=Os06t0705700-01
Chr06	irgsp1_rep	CDS	29824629	29824728	.	+	0	Parent=Os06t0705700-01
Chr06	irgsp1_rep	CDS	29824840	29825057	.	+	2	Parent=Os06t0705700-01
Chr06	irgsp1_rep	CDS	29825152	29826492	.	+	0	Parent=Os06t0705700-01
Chr06	irgsp1_rep	three_prime_UTR	29826493	29826498	.	+	.	Parent=Os06t0705700-01
Chr06	irgsp1_rep	mRNA	29824636	29826498	.	-	.	ID=Os06t0705901-00;Name=Os06t0705901-00;Locus_id=Os06g0705901;Note=Hypothetical protein.;Transcript_evidence=tplb0058e01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0705901-00
Chr06	irgsp1_rep	CDS	29825974	29826498	.	-	0	Parent=Os06t0705901-00
Chr06	irgsp1_rep	three_prime_UTR	29825213	29825973	.	-	.	Parent=Os06t0705901-00
Chr06	irgsp1_rep	three_prime_UTR	29824844	29825130	.	-	.	Parent=Os06t0705901-00
Chr06	irgsp1_rep	three_prime_UTR	29824636	29824733	.	-	.	Parent=Os06t0705901-00
Chr06	irgsp1_rep	mRNA	29830220	29831075	.	-	.	ID=Os06t0706000-01;Name=Os06t0706000-01;Locus_id=Os06g0706000;Note=Hypothetical protein.;Transcript_evidence=AK070685 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023059M14;Expression=AK070685;TENOR=Os06t0706000-01;KEGG=Os06t0706000-01
Chr06	irgsp1_rep	five_prime_UTR	29830785	29831075	.	-	.	Parent=Os06t0706000-01
Chr06	irgsp1_rep	CDS	29830470	29830784	.	-	0	Parent=Os06t0706000-01
Chr06	irgsp1_rep	three_prime_UTR	29830220	29830469	.	-	.	Parent=Os06t0706000-01
Chr06	irgsp1_rep	mRNA	29828537	29831137	.	+	.	ID=Os06t0706100-00;Name=Os06t0706100-00;Locus_id=Os06g0706100;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Similar to Peptide transporter PTR2.;Transcript_evidence=AK334364 (DDBJ);ORF_evidence=B6TVK5 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);Oryzabase=23672;TENOR=Os06t0706100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	29828537	29828729	.	+	0	Parent=Os06t0706100-00
Chr06	irgsp1_rep	CDS	29828825	29829042	.	+	2	Parent=Os06t0706100-00
Chr06	irgsp1_rep	CDS	29829466	29830010	.	+	0	Parent=Os06t0706100-00
Chr06	irgsp1_rep	CDS	29830329	29831124	.	+	1	Parent=Os06t0706100-00
Chr06	irgsp1_rep	three_prime_UTR	29831125	29831137	.	+	.	Parent=Os06t0706100-00
Chr06	irgsp1_rep	mRNA	29838314	29841264	.	+	.	ID=Os06t0706400-01;Name=Os06t0706400-01;Locus_id=Os06g0706400;RAP-DB Gene Symbol Synonym(s)=OsPTR9;RAP-DB Gene Name Synonym(s)=PTR/NRT1 homologue;CGSNL Gene Symbol=PTR9;CGSNL Gene Name=PROTEIN TRANSPORTER 9;Oryzabase Gene Symbol Synonym(s)=OsPTR9 OsNPF8.20%2C NPF8.20;Oryzabase Gene Name Synonym(s)=NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 8.20;Note=PTR/NRT1 (peptide transporter/nitrate transporter 1) family protein%2C Nitrogen utilization efficiency%2C growth and grain yield;Transcript_evidence=AK064899;ORF_evidence=Q5Z8U4;GO=Biological Process: transport (GO:0006810),Molecular Function: transporter activity (GO:0005215),Cellular Component: membrane (GO:0016020);InterPro=Proton-dependent oligopeptide transporter family (IPR000109),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J013000L13;Manual Curation=February 25%2C 2016;Literature_PMID=23231455;Oryzabase=21915;Expression=AK064899;TENOR=Os06t0706400-01;KEGG=Os06t0706400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	29838314	29838416	.	+	.	Parent=Os06t0706400-01
Chr06	irgsp1_rep	five_prime_UTR	29838621	29838720	.	+	.	Parent=Os06t0706400-01
Chr06	irgsp1_rep	five_prime_UTR	29838950	29839670	.	+	.	Parent=Os06t0706400-01
Chr06	irgsp1_rep	CDS	29839671	29840206	.	+	0	Parent=Os06t0706400-01
Chr06	irgsp1_rep	CDS	29840297	29841026	.	+	1	Parent=Os06t0706400-01
Chr06	irgsp1_rep	three_prime_UTR	29841027	29841264	.	+	.	Parent=Os06t0706400-01
Chr06	irgsp1_rep	mRNA	29841396	29841692	.	+	.	ID=Os06t0706500-00;Name=Os06t0706500-00;Locus_id=Os06g0706500;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5Z8U3 (UniProt);TENOR=Os06t0706500-00;KEGG=Os06t0706500-00
Chr06	irgsp1_rep	CDS	29841396	29841692	.	+	0	Parent=Os06t0706500-00
Chr06	irgsp1_rep	mRNA	29850302	29851762	.	-	.	ID=Os06t0706600-00;Name=Os06t0706600-00;Locus_id=Os06g0706600;CGSNL Gene Symbol=WAK65;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 65;Oryzabase Gene Symbol Synonym(s)=OsWAK65;Note=Similar to wall-associated kinase 3.;Transcript_evidence=AK376665 (DDBJ);ORF_evidence=Q01J49 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=6955;TENOR=Os06t0706600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	29851064	29851762	.	-	0	Parent=Os06t0706600-00
Chr06	irgsp1_rep	CDS	29850302	29850760	.	-	0	Parent=Os06t0706600-00
Chr06	irgsp1_rep	mRNA	29871368	29871718	.	-	.	ID=Os06t0706700-00;Name=Os06t0706700-00;Locus_id=Os06g0706700;Note=Similar to PsAD1.;Transcript_evidence=EU965944 (DDBJ);ORF_evidence=Q9LRI5 (UniProt);TENOR=Os06t0706700-00;KEGG=Os06t0706700-00
Chr06	irgsp1_rep	CDS	29871368	29871718	.	-	0	Parent=Os06t0706700-00
Chr06	irgsp1_rep	mRNA	29872524	29873858	.	+	.	ID=Os06t0706850-00;Name=Os06t0706850-00;Locus_id=Os06g0706850;Note=Similar to Glycosyltransferase.;Transcript_evidence=tplb0046e07 (Wheat FLcDNA);ORF_evidence=B6UFI8 (UniProt);TENOR=Os06t0706850-00
Chr06	irgsp1_rep	CDS	29872524	29873858	.	+	0	Parent=Os06t0706850-00
Chr06	irgsp1_rep	mRNA	29872495	29874474	.	-	.	ID=Os06t0707000-01;Name=Os06t0707000-01;Locus_id=Os06g0707000;RAP-DB Gene Symbol Synonym(s)=XYXT1;RAP-DB Gene Name Synonym(s)=xylan xylosyltransferase1;CGSNL Gene Symbol=XYXT1;CGSNL Gene Name=XYLAN XYLOSYLTRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=OsXYXT1;Oryzabase Gene Name Synonym(s)=xylan xylosyltransferase1;Note=GT61 glycosyltransferase%2C Beta-1%2C2-xylosyltransferase%2C Xylan xylosyltransferase%2C Xylan biosynthesis;Transcript_evidence=MG763173;ORF_evidence=Q5Z8T8;GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyltransferase 61 (IPR007657);Manual Curation=March 10%2C 2020;Literature_PMID=29325159;Oryzabase=15267;TENOR=Os06t0707000-00;Subcellular location=Golgi apparatus (GO:0005794)
Chr06	irgsp1_rep	five_prime_UTR	29874425	29874474	.	-	.	Parent=Os06t0707000-01
Chr06	irgsp1_rep	CDS	29874289	29874424	.	-	0	Parent=Os06t0707000-01
Chr06	irgsp1_rep	CDS	29873903	29873959	.	-	2	Parent=Os06t0707000-01
Chr06	irgsp1_rep	CDS	29872566	29873770	.	-	2	Parent=Os06t0707000-01
Chr06	irgsp1_rep	three_prime_UTR	29872495	29872565	.	-	.	Parent=Os06t0707000-01
Chr06	irgsp1_rep	mRNA	29877099	29884562	.	+	.	ID=Os06t0707100-01;Name=Os06t0707100-01;Locus_id=Os06g0707100;Note=Multi antimicrobial extrusion protein MatE family protein.;Transcript_evidence=AK066647 (DDBJ%2C Best hit);ORF_evidence=NP_200058.1 (RefSeq);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);NIAS_FLcDNA=J013074A05;Expression=AK066647;TENOR=Os06t0707100-01;KEGG=Os06t0707100-01
Chr06	irgsp1_rep	five_prime_UTR	29877099	29877148	.	+	.	Parent=Os06t0707100-01
Chr06	irgsp1_rep	CDS	29877149	29877403	.	+	0	Parent=Os06t0707100-01
Chr06	irgsp1_rep	CDS	29877804	29878354	.	+	0	Parent=Os06t0707100-01
Chr06	irgsp1_rep	CDS	29878486	29878572	.	+	1	Parent=Os06t0707100-01
Chr06	irgsp1_rep	CDS	29878811	29878867	.	+	1	Parent=Os06t0707100-01
Chr06	irgsp1_rep	CDS	29878970	29879208	.	+	1	Parent=Os06t0707100-01
Chr06	irgsp1_rep	CDS	29880091	29880209	.	+	2	Parent=Os06t0707100-01
Chr06	irgsp1_rep	CDS	29880298	29880384	.	+	0	Parent=Os06t0707100-01
Chr06	irgsp1_rep	CDS	29881412	29881468	.	+	0	Parent=Os06t0707100-01
Chr06	irgsp1_rep	three_prime_UTR	29881469	29881545	.	+	.	Parent=Os06t0707100-01
Chr06	irgsp1_rep	three_prime_UTR	29881637	29881695	.	+	.	Parent=Os06t0707100-01
Chr06	irgsp1_rep	three_prime_UTR	29882676	29884137	.	+	.	Parent=Os06t0707100-01
Chr06	irgsp1_rep	three_prime_UTR	29884390	29884562	.	+	.	Parent=Os06t0707100-01
Chr06	irgsp1_rep	mRNA	29884564	29886303	.	-	.	ID=Os06t0707200-01;Name=Os06t0707200-01;Locus_id=Os06g0707200;Note=Glycosyltransferase AER61%2C uncharacterized domain containing protein.;Transcript_evidence=AK059411 (DDBJ%2C Best hit),AK071568 (DDBJ%2C Best hit);ORF_evidence=NP_001151219.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyltransferase AER61%2C uncharacterised (IPR007657);NIAS_FLcDNA=001-027-C09,J023103D13;Oryzabase=15268;Expression=AK059411;TENOR=Os06t0707200-01;KEGG=Os06t0707200-01
Chr06	irgsp1_rep	five_prime_UTR	29886220	29886303	.	-	.	Parent=Os06t0707200-01
Chr06	irgsp1_rep	CDS	29886087	29886219	.	-	0	Parent=Os06t0707200-01
Chr06	irgsp1_rep	CDS	29884716	29885965	.	-	2	Parent=Os06t0707200-01
Chr06	irgsp1_rep	three_prime_UTR	29884564	29884715	.	-	.	Parent=Os06t0707200-01
Chr06	irgsp1_rep	mRNA	29886368	29886673	.	+	.	ID=Os06t0707250-00;Name=Os06t0707250-00;Locus_id=Os06g0707250;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os06t0707250-00;KEGG=Os06t0707250-00
Chr06	irgsp1_rep	CDS	29886368	29886673	.	+	0	Parent=Os06t0707250-00
Chr06	irgsp1_rep	mRNA	29891030	29892905	.	-	.	ID=Os06t0707300-02;Name=Os06t0707300-02;Locus_id=Os06g0707300;Oryzabase Gene Symbol Synonym(s)=OsFbox326%2C Os_F0327;Oryzabase Gene Name Synonym(s)=F-box protein 326;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK101481 (DDBJ%2C Best hit),AK063291 (DDBJ%2C Best hit);ORF_evidence=A2YGU4 (UniProt);NIAS_FLcDNA=J033041C08,001-113-E03;Oryzabase=17102;Expression=AK101481;TENOR=Os06t0707300-02;KEGG=Os06t0707300-02
Chr06	irgsp1_rep	five_prime_UTR	29892814	29892905	.	-	.	Parent=Os06t0707300-02
Chr06	irgsp1_rep	CDS	29891395	29892813	.	-	0	Parent=Os06t0707300-02
Chr06	irgsp1_rep	three_prime_UTR	29891030	29891394	.	-	.	Parent=Os06t0707300-02
Chr06	irgsp1_rep	mRNA	29897280	29899109	.	-	.	ID=Os06t0707350-00;Name=Os06t0707350-00;Locus_id=Os06g0707350;Note=Similar to NBS-LRR disease resistance protein homologue.;Transcript_evidence=AK355483 (DDBJ);ORF_evidence=Q84KC8 (UniProt);TENOR=Os06t0707350-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	29897280	29899109	.	-	0	Parent=Os06t0707350-00
Chr06	irgsp1_rep	mRNA	29905262	29908144	.	-	.	ID=Os06t0707400-01;Name=Os06t0707400-01;Locus_id=Os06g0707400;Note=Conserved hypothetical protein.;Transcript_evidence=AK066341 (DDBJ%2C Best hit);ORF_evidence=B8A944 (UniProt);NIAS_FLcDNA=J013063P11;TENOR=Os06t0707400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	29907589	29908144	.	-	.	Parent=Os06t0707400-01
Chr06	irgsp1_rep	five_prime_UTR	29907315	29907505	.	-	.	Parent=Os06t0707400-01
Chr06	irgsp1_rep	CDS	29906831	29907314	.	-	0	Parent=Os06t0707400-01
Chr06	irgsp1_rep	CDS	29906305	29906723	.	-	2	Parent=Os06t0707400-01
Chr06	irgsp1_rep	three_prime_UTR	29905262	29906304	.	-	.	Parent=Os06t0707400-01
Chr06	irgsp1_rep	mRNA	29905262	29907393	.	-	.	ID=Os06t0707400-02;Name=Os06t0707400-02;Locus_id=Os06g0707400;Note=Similar to NBS-LRR disease resistance protein homologue.;Transcript_evidence=AK067727 (DDBJ%2C Best hit);ORF_evidence=Q84KC2 (UniProt);NIAS_FLcDNA=J013118E14;TENOR=Os06t0707400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	29907315	29907393	.	-	.	Parent=Os06t0707400-02
Chr06	irgsp1_rep	CDS	29906831	29907314	.	-	0	Parent=Os06t0707400-02
Chr06	irgsp1_rep	CDS	29906305	29906723	.	-	2	Parent=Os06t0707400-02
Chr06	irgsp1_rep	three_prime_UTR	29905262	29906304	.	-	.	Parent=Os06t0707400-02
Chr06	irgsp1_rep	mRNA	29921667	29924540	.	-	.	ID=Os06t0707700-01;Name=Os06t0707700-01;Locus_id=Os06g0707700;Note=NB-ARC domain containing protein.;Transcript_evidence=AK100720 (DDBJ%2C Best hit);ORF_evidence=Q84KC8 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J023116F01;TENOR=Os06t0707700-01
Chr06	irgsp1_rep	five_prime_UTR	29923706	29924540	.	-	.	Parent=Os06t0707700-01
Chr06	irgsp1_rep	CDS	29921667	29923705	.	-	0	Parent=Os06t0707700-01
Chr06	irgsp1_rep	mRNA	29927274	29931821	.	-	.	ID=Os06t0707733-00;Name=Os06t0707733-00;Locus_id=Os06g0707733;Note=Disease resistance protein domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2YGU6 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os06t0707733-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	29931338	29931821	.	-	0	Parent=Os06t0707733-00
Chr06	irgsp1_rep	CDS	29927274	29931226	.	-	2	Parent=Os06t0707733-00
Chr06	irgsp1_rep	mRNA	29947252	29948044	.	-	.	ID=Os06t0707800-01;Name=Os06t0707800-01;Locus_id=Os06g0707800;Note=Non-protein coding transcript.;Transcript_evidence=AK111291 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-181-A05;TENOR=Os06t0707800-01
Chr06	irgsp1_rep	exon	29947252	29948044	.	-	.	Parent=Os06t0707800-01
Chr06	irgsp1_rep	mRNA	29939759	29948040	.	-	.	ID=Os06t0707800-02;Name=Os06t0707800-02;Locus_id=Os06g0707800;Note=Similar to H0215A08.3 protein.;Transcript_evidence=AK100253 (DDBJ%2C Best hit);ORF_evidence=Q01N39 (UniProt);NIAS_FLcDNA=J023061C20;Expression=AK100253;TENOR=Os06t0707800-02;KEGG=Os06t0707800-02
Chr06	irgsp1_rep	five_prime_UTR	29947841	29948040	.	-	.	Parent=Os06t0707800-02
Chr06	irgsp1_rep	five_prime_UTR	29941144	29942317	.	-	.	Parent=Os06t0707800-02
Chr06	irgsp1_rep	five_prime_UTR	29940917	29941030	.	-	.	Parent=Os06t0707800-02
Chr06	irgsp1_rep	five_prime_UTR	29940809	29940821	.	-	.	Parent=Os06t0707800-02
Chr06	irgsp1_rep	CDS	29940371	29940808	.	-	0	Parent=Os06t0707800-02
Chr06	irgsp1_rep	three_prime_UTR	29939759	29940370	.	-	.	Parent=Os06t0707800-02
Chr06	irgsp1_rep	mRNA	29939759	29945659	.	-	.	ID=Os06t0707800-03;Name=Os06t0707800-03;Locus_id=Os06g0707800;Note=Disease resistance protein domain containing protein.;Transcript_evidence=AK099567 (DDBJ%2C Best hit);ORF_evidence=Q5Z9J2 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013034N02;TENOR=Os06t0707800-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	29945555	29945659	.	-	.	Parent=Os06t0707800-03
Chr06	irgsp1_rep	CDS	29943115	29945554	.	-	0	Parent=Os06t0707800-03
Chr06	irgsp1_rep	CDS	29941741	29941796	.	-	2	Parent=Os06t0707800-03
Chr06	irgsp1_rep	three_prime_UTR	29941144	29941740	.	-	.	Parent=Os06t0707800-03
Chr06	irgsp1_rep	three_prime_UTR	29940917	29941030	.	-	.	Parent=Os06t0707800-03
Chr06	irgsp1_rep	three_prime_UTR	29940680	29940821	.	-	.	Parent=Os06t0707800-03
Chr06	irgsp1_rep	three_prime_UTR	29939759	29940319	.	-	.	Parent=Os06t0707800-03
Chr06	irgsp1_rep	mRNA	29943167	29945620	.	-	.	ID=Os06t0707800-04;Name=Os06t0707800-04;Locus_id=Os06g0707800;Note=Similar to OSIGBa0148A10.13 protein.;Transcript_evidence=AK102129 (DDBJ%2C Best hit);ORF_evidence=Q5Z9J2 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J033085A01;Expression=AK102129;TENOR=Os06t0707800-04;KEGG=Os06t0707800-04
Chr06	irgsp1_rep	five_prime_UTR	29945555	29945620	.	-	.	Parent=Os06t0707800-04
Chr06	irgsp1_rep	CDS	29943167	29945554	.	-	0	Parent=Os06t0707800-04
Chr06	irgsp1_rep	mRNA	29949898	29954818	.	+	.	ID=Os06t0708000-01;Name=Os06t0708000-01;Locus_id=Os06g0708000;RAP-DB Gene Symbol Synonym(s)=BWMK1%2C OsBWMK1%2C MPK12%2C MAPK1%2C OsMAPK1%2C OsMPK12%2C OsMPK17-1%2C OsBWMK1L;RAP-DB Gene Name Synonym(s)=BLAST- AND WOUND- INDUCIBLE MAPK GENE 1%2C blast- and wound- inducible MAPK gene-1%2C Blast- and wound-induced MAP kinase 1%2C Mitogen-activated protein kinase 12%2C MAP kinase 12%2C MAP kinase 1%2C MAP kinase 17;CGSNL Gene Symbol=BWMK1;CGSNL Gene Name=BLAST- AND WOUND- INDUCIBLE MAPK GENE 1;Oryzabase Gene Symbol Synonym(s)=OsBWMK1%2C MPK12%2C MAPK1%2C OsMAPK1%2C OsMPK12%2C OsMPK17-1%2C OsBWMK1L%2C OsBWMK1M%2C OsBWMK1S;Oryzabase Gene Name Synonym(s)=blast- and wound- inducible MAPK gene-1%2C Blast- and wound-induced MAP kinase 1%2C Mitogen-activated protein kinase 12%2C MAP kinase 12%2C MAP kinase 1%2C MAP kinase 17;Note=Mitogen-activated protein kinase;Transcript_evidence=AK066531;ORF_evidence=Q5Z9J0;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: MAP kinase activity (GO:0004707),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine/threonine/dual specificity protein kinase%2C catalytic  domain (IPR002290),Protein kinase%2C ATP binding site (IPR017441),Mitogen-activated protein (MAP) kinase%2C conserved site (IPR003527);NIAS_FLcDNA=J013074K13;Manual Curation=October 10%2C 2015;Literature_PMID=12913152,10624015,17586462;Oryzabase=6000;Expression=AK066531;TENOR=Os06t0708000-01;KEGG=Os06t0708000-01
Chr06	irgsp1_rep	five_prime_UTR	29949898	29950140	.	+	.	Parent=Os06t0708000-01
Chr06	irgsp1_rep	CDS	29950141	29950350	.	+	0	Parent=Os06t0708000-01
Chr06	irgsp1_rep	CDS	29951252	29951660	.	+	0	Parent=Os06t0708000-01
Chr06	irgsp1_rep	CDS	29951794	29951921	.	+	2	Parent=Os06t0708000-01
Chr06	irgsp1_rep	CDS	29951995	29952054	.	+	0	Parent=Os06t0708000-01
Chr06	irgsp1_rep	CDS	29952402	29952551	.	+	0	Parent=Os06t0708000-01
Chr06	irgsp1_rep	CDS	29952672	29952827	.	+	0	Parent=Os06t0708000-01
Chr06	irgsp1_rep	CDS	29952946	29953083	.	+	0	Parent=Os06t0708000-01
Chr06	irgsp1_rep	CDS	29953171	29953244	.	+	0	Parent=Os06t0708000-01
Chr06	irgsp1_rep	CDS	29953653	29953754	.	+	1	Parent=Os06t0708000-01
Chr06	irgsp1_rep	CDS	29953852	29954092	.	+	1	Parent=Os06t0708000-01
Chr06	irgsp1_rep	CDS	29954279	29954353	.	+	0	Parent=Os06t0708000-01
Chr06	irgsp1_rep	three_prime_UTR	29954354	29954818	.	+	.	Parent=Os06t0708000-01
Chr06	irgsp1_rep	mRNA	29950569	29954873	.	+	.	ID=Os06t0708000-02;Name=Os06t0708000-02;Locus_id=Os06g0708000;RAP-DB Gene Symbol Synonym(s)=BWMK1%2C OsBWMK1S;RAP-DB Gene Name Synonym(s)=BLAST- AND WOUND- INDUCIBLE MAPK GENE 1;CGSNL Gene Symbol=BWMK1;CGSNL Gene Name=BLAST- AND WOUND- INDUCIBLE MAPK GENE 1;Oryzabase Gene Symbol Synonym(s)=OsBWMK1%2C MPK12%2C MAPK1%2C OsMAPK1%2C OsMPK12%2C OsMPK17-1%2C OsBWMK1L%2C OsBWMK1M%2C OsBWMK1S;Oryzabase Gene Name Synonym(s)=blast- and wound- inducible MAPK gene-1%2C Blast- and wound-induced MAP kinase 1%2C Mitogen-activated protein kinase 12%2C MAP kinase 12%2C MAP kinase 1%2C MAP kinase 17;Note=Mitogen-activated protein kinase%2C Defense response;Transcript_evidence=AK067925,AF177392;ORF_evidence=Q5Z9J0-2;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: MAP kinase activity (GO:0004707),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine/threonine/dual specificity protein kinase%2C catalytic  domain (IPR002290),Protein kinase%2C ATP binding site (IPR017441),Mitogen-activated protein (MAP) kinase%2C conserved site (IPR003527);NIAS_FLcDNA=J013121F14;Manual Curation=October 10%2C 2015;Literature_PMID=17586462;Oryzabase=6000;Expression=AK067925;TENOR=Os06t0708000-02;KEGG=Os06t0708000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	29950569	29951263	.	+	.	Parent=Os06t0708000-02
Chr06	irgsp1_rep	CDS	29951264	29951660	.	+	0	Parent=Os06t0708000-02
Chr06	irgsp1_rep	CDS	29951794	29951921	.	+	2	Parent=Os06t0708000-02
Chr06	irgsp1_rep	CDS	29951995	29952054	.	+	0	Parent=Os06t0708000-02
Chr06	irgsp1_rep	CDS	29952402	29952551	.	+	0	Parent=Os06t0708000-02
Chr06	irgsp1_rep	CDS	29952672	29952827	.	+	0	Parent=Os06t0708000-02
Chr06	irgsp1_rep	CDS	29952946	29953083	.	+	0	Parent=Os06t0708000-02
Chr06	irgsp1_rep	CDS	29953171	29953244	.	+	0	Parent=Os06t0708000-02
Chr06	irgsp1_rep	CDS	29953653	29953754	.	+	1	Parent=Os06t0708000-02
Chr06	irgsp1_rep	CDS	29953852	29954092	.	+	1	Parent=Os06t0708000-02
Chr06	irgsp1_rep	CDS	29954279	29954353	.	+	0	Parent=Os06t0708000-02
Chr06	irgsp1_rep	three_prime_UTR	29954354	29954873	.	+	.	Parent=Os06t0708000-02
Chr06	irgsp1_rep	mRNA	29950247	29954731	.	+	.	ID=Os06t0708000-03;Name=Os06t0708000-03;Locus_id=Os06g0708000;RAP-DB Gene Symbol Synonym(s)=BWMK1%2C OsBWMK1%2C MPK12%2C MAPK1%2C OsMAPK1%2C OsMPK12%2C OsMPK17-1%2C OsBWMK1L%2C OsBWMK1M%2C OsBWMK1S;RAP-DB Gene Name Synonym(s)=BLAST- AND WOUND- INDUCIBLE MAPK GENE 1%2C blast- and wound- inducible MAPK gene-1%2C Blast- and wound-induced MAP kinase 1%2C Mitogen-activated protein kinase 12%2C MAP kinase 12%2C MAP kinase 1%2C MAP kinase 17;CGSNL Gene Symbol=BWMK1;CGSNL Gene Name=BLAST- AND WOUND- INDUCIBLE MAPK GENE 1;Oryzabase Gene Symbol Synonym(s)=OsBWMK1%2C MPK12%2C MAPK1%2C OsMAPK1%2C OsMPK12%2C OsMPK17-1%2C OsBWMK1L%2C OsBWMK1M%2C OsBWMK1S;Oryzabase Gene Name Synonym(s)=blast- and wound- inducible MAPK gene-1%2C Blast- and wound-induced MAP kinase 1%2C Mitogen-activated protein kinase 12%2C MAP kinase 12%2C MAP kinase 1%2C MAP kinase 17;Note=MAP kinase%2C Plant defense and wounding signaling;Transcript_evidence=AF194415;ORF_evidence=Q5Z9J0-2;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: MAP kinase activity (GO:0004707),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine/threonine/dual specificity protein kinase%2C catalytic  domain (IPR002290),Protein kinase%2C ATP binding site (IPR017441),Mitogen-activated protein (MAP) kinase%2C conserved site (IPR003527);Manual Curation=December 17%2C 2009;Literature_PMID=12913152,10624015,12913152,17586462,16673940;Oryzabase=6000;TENOR=Os06t0708000-03;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	29950247	29950350	.	+	.	Parent=Os06t0708000-03
Chr06	irgsp1_rep	five_prime_UTR	29951252	29951263	.	+	.	Parent=Os06t0708000-03
Chr06	irgsp1_rep	CDS	29951264	29951660	.	+	0	Parent=Os06t0708000-03
Chr06	irgsp1_rep	CDS	29951794	29951921	.	+	2	Parent=Os06t0708000-03
Chr06	irgsp1_rep	CDS	29951995	29952054	.	+	0	Parent=Os06t0708000-03
Chr06	irgsp1_rep	CDS	29952402	29952551	.	+	0	Parent=Os06t0708000-03
Chr06	irgsp1_rep	CDS	29952672	29952827	.	+	0	Parent=Os06t0708000-03
Chr06	irgsp1_rep	CDS	29952946	29953083	.	+	0	Parent=Os06t0708000-03
Chr06	irgsp1_rep	CDS	29953171	29953244	.	+	0	Parent=Os06t0708000-03
Chr06	irgsp1_rep	CDS	29953653	29953754	.	+	1	Parent=Os06t0708000-03
Chr06	irgsp1_rep	CDS	29953852	29954092	.	+	1	Parent=Os06t0708000-03
Chr06	irgsp1_rep	CDS	29954279	29954353	.	+	0	Parent=Os06t0708000-03
Chr06	irgsp1_rep	three_prime_UTR	29954354	29954731	.	+	.	Parent=Os06t0708000-03
Chr06	irgsp1_rep	mRNA	29951040	29954731	.	+	.	ID=Os06t0708000-04;Name=Os06t0708000-04;Locus_id=Os06g0708000;RAP-DB Gene Symbol Synonym(s)=BWMK1%2C OsBWMK1M;RAP-DB Gene Name Synonym(s)=BLAST- AND WOUND- INDUCIBLE MAPK GENE 1;CGSNL Gene Symbol=BWMK1;CGSNL Gene Name=BLAST- AND WOUND- INDUCIBLE MAPK GENE 1;Oryzabase Gene Symbol Synonym(s)=OsBWMK1%2C MPK12%2C MAPK1%2C OsMAPK1%2C OsMPK12%2C OsMPK17-1%2C OsBWMK1L%2C OsBWMK1M%2C OsBWMK1S;Oryzabase Gene Name Synonym(s)=blast- and wound- inducible MAPK gene-1%2C Blast- and wound-induced MAP kinase 1%2C Mitogen-activated protein kinase 12%2C MAP kinase 12%2C MAP kinase 1%2C MAP kinase 17;Note=Mitogen-activated protein kinase%2C Defense response;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: MAP kinase activity (GO:0004707),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine/threonine/dual specificity protein kinase%2C catalytic  domain (IPR002290),Protein kinase%2C ATP binding site (IPR017441),Mitogen-activated protein (MAP) kinase%2C conserved site (IPR003527);Manual Curation=October 10%2C 2015;Literature_PMID=17586462;Oryzabase=6000
Chr06	irgsp1_rep	CDS	29951040	29951042	.	+	0	Parent=Os06t0708000-04
Chr06	irgsp1_rep	CDS	29951252	29951660	.	+	0	Parent=Os06t0708000-04
Chr06	irgsp1_rep	CDS	29951794	29951921	.	+	2	Parent=Os06t0708000-04
Chr06	irgsp1_rep	CDS	29951995	29952054	.	+	0	Parent=Os06t0708000-04
Chr06	irgsp1_rep	CDS	29952402	29952551	.	+	0	Parent=Os06t0708000-04
Chr06	irgsp1_rep	CDS	29952672	29952827	.	+	0	Parent=Os06t0708000-04
Chr06	irgsp1_rep	CDS	29952946	29953083	.	+	0	Parent=Os06t0708000-04
Chr06	irgsp1_rep	CDS	29953171	29953244	.	+	0	Parent=Os06t0708000-04
Chr06	irgsp1_rep	CDS	29953653	29953754	.	+	1	Parent=Os06t0708000-04
Chr06	irgsp1_rep	CDS	29953852	29954092	.	+	1	Parent=Os06t0708000-04
Chr06	irgsp1_rep	CDS	29954279	29954353	.	+	0	Parent=Os06t0708000-04
Chr06	irgsp1_rep	three_prime_UTR	29954354	29954731	.	+	.	Parent=Os06t0708000-04
Chr06	irgsp1_rep	mRNA	29949950	29950355	.	-	.	ID=Os06t0708050-00;Name=Os06t0708050-00;Locus_id=Os06g0708050;Note=Hypothetical gene.;Transcript_evidence=EU949346 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0708050-00;KEGG=Os06t0708050-00
Chr06	irgsp1_rep	five_prime_UTR	29950302	29950355	.	-	.	Parent=Os06t0708050-00
Chr06	irgsp1_rep	CDS	29949966	29950301	.	-	0	Parent=Os06t0708050-00
Chr06	irgsp1_rep	three_prime_UTR	29949950	29949965	.	-	.	Parent=Os06t0708050-00
Chr06	irgsp1_rep	mRNA	29951260	29953086	.	-	.	ID=Os06t0708075-00;Name=Os06t0708075-00;Locus_id=Os06g0708075;Note=Non-protein coding transcript.;Transcript_evidence=tplb0059e09 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os06t0708075-00
Chr06	irgsp1_rep	exon	29952944	29953086	.	-	.	Parent=Os06t0708075-00
Chr06	irgsp1_rep	exon	29952641	29952825	.	-	.	Parent=Os06t0708075-00
Chr06	irgsp1_rep	exon	29952382	29952525	.	-	.	Parent=Os06t0708075-00
Chr06	irgsp1_rep	exon	29951792	29951960	.	-	.	Parent=Os06t0708075-00
Chr06	irgsp1_rep	exon	29951260	29951665	.	-	.	Parent=Os06t0708075-00
Chr06	irgsp1_rep	mRNA	29955726	29960777	.	-	.	ID=Os06t0708100-01;Name=Os06t0708100-01;Locus_id=Os06g0708100;Note=Carboxylesterase%2C type B family protein.;Transcript_evidence=AK102365 (DDBJ%2C Best hit);ORF_evidence=B6UAH8 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=J033091K01;Expression=AK102365;TENOR=Os06t0708100-01;KEGG=Os06t0708100-01
Chr06	irgsp1_rep	five_prime_UTR	29960562	29960777	.	-	.	Parent=Os06t0708100-01
Chr06	irgsp1_rep	CDS	29960293	29960561	.	-	0	Parent=Os06t0708100-01
Chr06	irgsp1_rep	CDS	29959964	29960040	.	-	1	Parent=Os06t0708100-01
Chr06	irgsp1_rep	CDS	29959571	29959640	.	-	2	Parent=Os06t0708100-01
Chr06	irgsp1_rep	CDS	29959370	29959450	.	-	1	Parent=Os06t0708100-01
Chr06	irgsp1_rep	CDS	29959165	29959239	.	-	1	Parent=Os06t0708100-01
Chr06	irgsp1_rep	CDS	29958978	29959079	.	-	1	Parent=Os06t0708100-01
Chr06	irgsp1_rep	CDS	29958490	29958630	.	-	1	Parent=Os06t0708100-01
Chr06	irgsp1_rep	CDS	29957995	29958060	.	-	1	Parent=Os06t0708100-01
Chr06	irgsp1_rep	CDS	29957700	29957843	.	-	1	Parent=Os06t0708100-01
Chr06	irgsp1_rep	CDS	29956894	29956984	.	-	1	Parent=Os06t0708100-01
Chr06	irgsp1_rep	CDS	29956274	29956435	.	-	0	Parent=Os06t0708100-01
Chr06	irgsp1_rep	three_prime_UTR	29955726	29956273	.	-	.	Parent=Os06t0708100-01
Chr06	irgsp1_rep	mRNA	29955438	29960776	.	-	.	ID=Os06t0708100-02;Name=Os06t0708100-02;Locus_id=Os06g0708100;Note=Similar to Carboxylesterase-like protein.;Transcript_evidence=AK066901 (DDBJ%2C Best hit);ORF_evidence=A2YGU8 (UniProt);NIAS_FLcDNA=J013092G03;Expression=AK066901;TENOR=Os06t0708100-02;KEGG=Os06t0708100-02
Chr06	irgsp1_rep	five_prime_UTR	29960562	29960776	.	-	.	Parent=Os06t0708100-02
Chr06	irgsp1_rep	CDS	29960293	29960561	.	-	0	Parent=Os06t0708100-02
Chr06	irgsp1_rep	CDS	29959964	29960040	.	-	1	Parent=Os06t0708100-02
Chr06	irgsp1_rep	CDS	29959571	29959640	.	-	2	Parent=Os06t0708100-02
Chr06	irgsp1_rep	CDS	29959370	29959450	.	-	1	Parent=Os06t0708100-02
Chr06	irgsp1_rep	CDS	29959165	29959239	.	-	1	Parent=Os06t0708100-02
Chr06	irgsp1_rep	CDS	29958887	29959079	.	-	1	Parent=Os06t0708100-02
Chr06	irgsp1_rep	three_prime_UTR	29957995	29958886	.	-	.	Parent=Os06t0708100-02
Chr06	irgsp1_rep	three_prime_UTR	29957700	29957843	.	-	.	Parent=Os06t0708100-02
Chr06	irgsp1_rep	three_prime_UTR	29956894	29956984	.	-	.	Parent=Os06t0708100-02
Chr06	irgsp1_rep	three_prime_UTR	29955438	29956435	.	-	.	Parent=Os06t0708100-02
Chr06	irgsp1_rep	mRNA	29961054	29967478	.	+	.	ID=Os06t0708200-01;Name=Os06t0708200-01;Locus_id=Os06g0708200;CGSNL Gene Symbol=MTOPVIB;Oryzabase Gene Symbol Synonym(s)=OsMTOPVIB;Oryzabase Gene Name Synonym(s)=meiotic DNA topoisomerase VIB subunit%2C DNA Topoisomerase VI-B Subunit;Note=a member of the TopoVIB-like protein family%2C Promotion of meiotic DNA double-strand break (DSB) formation;Transcript_evidence=AK103849 (DDBJ%2C Best hit);ORF_evidence=B9FQU2 (UniProt);NIAS_FLcDNA=J033148K23;Manual Curation=July 29%2C 2019;Literature_PMID=27456761;Oryzabase=21365;TENOR=Os06t0708200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	29961054	29961054	.	+	.	Parent=Os06t0708200-01
Chr06	irgsp1_rep	CDS	29961055	29961325	.	+	0	Parent=Os06t0708200-01
Chr06	irgsp1_rep	CDS	29961574	29961657	.	+	2	Parent=Os06t0708200-01
Chr06	irgsp1_rep	CDS	29962057	29962083	.	+	2	Parent=Os06t0708200-01
Chr06	irgsp1_rep	CDS	29962780	29962888	.	+	2	Parent=Os06t0708200-01
Chr06	irgsp1_rep	CDS	29962968	29963052	.	+	1	Parent=Os06t0708200-01
Chr06	irgsp1_rep	CDS	29963315	29963425	.	+	0	Parent=Os06t0708200-01
Chr06	irgsp1_rep	three_prime_UTR	29963426	29964506	.	+	.	Parent=Os06t0708200-01
Chr06	irgsp1_rep	three_prime_UTR	29965706	29965899	.	+	.	Parent=Os06t0708200-01
Chr06	irgsp1_rep	three_prime_UTR	29966028	29966151	.	+	.	Parent=Os06t0708200-01
Chr06	irgsp1_rep	three_prime_UTR	29966996	29967478	.	+	.	Parent=Os06t0708200-01
Chr06	irgsp1_rep	mRNA	29963017	29967478	.	+	.	ID=Os06t0708200-02;Name=Os06t0708200-02;Locus_id=Os06g0708200;CGSNL Gene Symbol=MTOPVIB;Oryzabase Gene Symbol Synonym(s)=OsMTOPVIB;Oryzabase Gene Name Synonym(s)=meiotic DNA topoisomerase VIB subunit%2C DNA Topoisomerase VI-B Subunit;Note=Hypothetical conserved gene.;Transcript_evidence=AK068246 (DDBJ%2C Best hit);ORF_evidence=B9FQU2 (UniProt);NIAS_FLcDNA=J013140L18;Oryzabase=21365;Expression=AK068246;TENOR=Os06t0708200-02;KEGG=Os06t0708200-02
Chr06	irgsp1_rep	five_prime_UTR	29963017	29964273	.	+	.	Parent=Os06t0708200-02
Chr06	irgsp1_rep	CDS	29964274	29964510	.	+	0	Parent=Os06t0708200-02
Chr06	irgsp1_rep	three_prime_UTR	29964511	29965899	.	+	.	Parent=Os06t0708200-02
Chr06	irgsp1_rep	three_prime_UTR	29966028	29966151	.	+	.	Parent=Os06t0708200-02
Chr06	irgsp1_rep	three_prime_UTR	29966996	29967478	.	+	.	Parent=Os06t0708200-02
Chr06	irgsp1_rep	mRNA	29961225	29967295	.	+	.	ID=Os06t0708200-03;Name=Os06t0708200-03;Locus_id=Os06g0708200;RAP-DB Gene Symbol Synonym(s)=OsMTOPVIB;RAP-DB Gene Name Synonym(s)=DNA Topoisomerase VI-B Subunit;CGSNL Gene Symbol=MTOPVIB;Oryzabase Gene Symbol Synonym(s)=OsMTOPVIB;Oryzabase Gene Name Synonym(s)=meiotic DNA topoisomerase VIB subunit%2C DNA Topoisomerase VI-B Subunit;Note=DNA Topoisomerase VI-B Subunit%2C Meiotic bipolar spindle assembly%2C Promotion of meiotic DNA double-strand break (DSB) formation;Transcript_evidence=XP_015643072,Inferred from literature;ORF_evidence=XP_015643072 (GenBank);Manual Curation=July 29%2C 2019;Literature_PMID=31341087,27477684,27456761;Oryzabase=21365
Chr06	irgsp1_rep	CDS	29961225	29961296	.	+	0	Parent=Os06t0708200-03
Chr06	irgsp1_rep	CDS	29961388	29961499	.	+	0	Parent=Os06t0708200-03
Chr06	irgsp1_rep	CDS	29961574	29961657	.	+	2	Parent=Os06t0708200-03
Chr06	irgsp1_rep	CDS	29962057	29962083	.	+	2	Parent=Os06t0708200-03
Chr06	irgsp1_rep	CDS	29962780	29962891	.	+	2	Parent=Os06t0708200-03
Chr06	irgsp1_rep	CDS	29962971	29963052	.	+	1	Parent=Os06t0708200-03
Chr06	irgsp1_rep	CDS	29963315	29963335	.	+	0	Parent=Os06t0708200-03
Chr06	irgsp1_rep	CDS	29964313	29964506	.	+	0	Parent=Os06t0708200-03
Chr06	irgsp1_rep	CDS	29965320	29965461	.	+	1	Parent=Os06t0708200-03
Chr06	irgsp1_rep	CDS	29965706	29965899	.	+	0	Parent=Os06t0708200-03
Chr06	irgsp1_rep	CDS	29966028	29966151	.	+	1	Parent=Os06t0708200-03
Chr06	irgsp1_rep	CDS	29966996	29967295	.	+	0	Parent=Os06t0708200-03
Chr06	irgsp1_rep	mRNA	29967994	29970514	.	+	.	ID=Os06t0708300-01;Name=Os06t0708300-01;Locus_id=Os06g0708300;Note=Similar to RER1A protein.;Transcript_evidence=AK243324 (DDBJ%2C Best hit);ORF_evidence=NP_001151498.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Retrieval of early ER protein Rer1 (IPR004932);NIAS_FLcDNA=J100057H05;TENOR=Os06t0708300-01;KEGG=Os06t0708300-01
Chr06	irgsp1_rep	five_prime_UTR	29967994	29968154	.	+	.	Parent=Os06t0708300-01
Chr06	irgsp1_rep	CDS	29968155	29968507	.	+	0	Parent=Os06t0708300-01
Chr06	irgsp1_rep	CDS	29969285	29969465	.	+	1	Parent=Os06t0708300-01
Chr06	irgsp1_rep	CDS	29970023	29970070	.	+	0	Parent=Os06t0708300-01
Chr06	irgsp1_rep	three_prime_UTR	29970071	29970514	.	+	.	Parent=Os06t0708300-01
Chr06	irgsp1_rep	mRNA	29971111	29972973	.	+	.	ID=Os06t0708400-01;Name=Os06t0708400-01;Locus_id=Os06g0708400;RAP-DB Gene Symbol Synonym(s)=CYP19-4%2C OsCYP19-4%2C OsCYP-16%2C OsCYP19-3;RAP-DB Gene Name Synonym(s)=CYCLOPHILIN 19-4%2C cyclophilin 19-4%2C cyclophilin 16;CGSNL Gene Symbol=CYP19-4;CGSNL Gene Name=CYCLOPHILIN 19-4;Oryzabase Gene Symbol Synonym(s)=OsCYP19-4%2C OsCYP-16%2C OsCYP19-3%2C OsCYP19-4.1%2C OsCYP19-4.2%2C OsCYP19-4.3%2C OsCYP19-4.4%2C OsCYP19-4.5%2C OsCYP19-4.6%2C OsCYP19-4.7%2C OsCYP19-4.8;Oryzabase Gene Name Synonym(s)=cyclophilin 19-4%2C cyclophilin 16;Note=Cyclophilin%2C Cold tolerance;Transcript_evidence=Inferred from literature;ORF_evidence=Q5Z9I0;GO=Biological Process: protein peptidyl-prolyl isomerization (GO:0000413),Biological Process: protein folding (GO:0006457),Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);InterPro=Cyclophilin-type peptidyl-prolyl cis-trans isomerase (IPR024936),Cyclophilin-like domain (IPR029000),Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain (IPR002130),Cyclophilin-type peptidyl-prolyl cis-trans isomerase%2C conserved site (IPR020892);Manual Curation=November 9%2C 2015;Literature_PMID=26453745,21087465;Oryzabase=10059;TENOR=Os06t0708400-00
Chr06	irgsp1_rep	CDS	29971111	29971191	.	+	0	Parent=Os06t0708400-01
Chr06	irgsp1_rep	CDS	29971394	29971472	.	+	0	Parent=Os06t0708400-01
Chr06	irgsp1_rep	CDS	29971668	29971715	.	+	2	Parent=Os06t0708400-01
Chr06	irgsp1_rep	CDS	29971809	29971832	.	+	2	Parent=Os06t0708400-01
Chr06	irgsp1_rep	CDS	29972334	29972516	.	+	2	Parent=Os06t0708400-01
Chr06	irgsp1_rep	CDS	29972631	29972706	.	+	2	Parent=Os06t0708400-01
Chr06	irgsp1_rep	CDS	29972838	29972973	.	+	1	Parent=Os06t0708400-01
Chr06	irgsp1_rep	mRNA	29973898	29976258	.	+	.	ID=Os06t0708500-01;Name=Os06t0708500-01;Locus_id=Os06g0708500;CGSNL Gene Symbol=CYP20-1;CGSNL Gene Name=CYCLOPHILIN 20-1;Oryzabase Gene Symbol Synonym(s)=OsCYP20-1%2C OsCYP-17%2C OsCYP20-1a%2C OsCYP20-1b;Oryzabase Gene Name Synonym(s)=cyclophilin 20-1%2C cyclophilin 17;Note=Similar to Peptidyl-prolyl cis-trans isomerase.;Transcript_evidence=AK060865 (DDBJ%2C Best hit);ORF_evidence=A2YGV2 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);InterPro=Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type (IPR002130),Cyclophilin-like (IPR015891),Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type%2C conserved site (IPR020892);NIAS_FLcDNA=001-034-G11;Oryzabase=10060;Expression=AK060865;TENOR=Os06t0708500-01;KEGG=Os06t0708500-01 (EC:5.2.1.8)
Chr06	irgsp1_rep	five_prime_UTR	29973898	29973985	.	+	.	Parent=Os06t0708500-01
Chr06	irgsp1_rep	CDS	29973986	29974114	.	+	0	Parent=Os06t0708500-01
Chr06	irgsp1_rep	CDS	29974349	29974427	.	+	0	Parent=Os06t0708500-01
Chr06	irgsp1_rep	CDS	29974824	29974871	.	+	2	Parent=Os06t0708500-01
Chr06	irgsp1_rep	CDS	29974965	29974988	.	+	2	Parent=Os06t0708500-01
Chr06	irgsp1_rep	CDS	29975455	29975637	.	+	2	Parent=Os06t0708500-01
Chr06	irgsp1_rep	CDS	29975746	29975821	.	+	2	Parent=Os06t0708500-01
Chr06	irgsp1_rep	CDS	29975921	29976059	.	+	1	Parent=Os06t0708500-01
Chr06	irgsp1_rep	three_prime_UTR	29976060	29976258	.	+	.	Parent=Os06t0708500-01
Chr06	irgsp1_rep	mRNA	29973899	29976322	.	+	.	ID=Os06t0708500-02;Name=Os06t0708500-02;Locus_id=Os06g0708500;CGSNL Gene Symbol=CYP20-1;CGSNL Gene Name=CYCLOPHILIN 20-1;Oryzabase Gene Symbol Synonym(s)=OsCYP20-1%2C OsCYP-17%2C OsCYP20-1a%2C OsCYP20-1b;Oryzabase Gene Name Synonym(s)=cyclophilin 20-1%2C cyclophilin 17;Note=Similar to Peptidyl-prolyl cis-trans isomerase.;Transcript_evidence=AK072490 (DDBJ%2C Best hit);ORF_evidence=A2YGV2 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);InterPro=Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type (IPR002130),Cyclophilin-like (IPR015891),Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type%2C conserved site (IPR020892);NIAS_FLcDNA=J023128K16;Oryzabase=10060;TENOR=Os06t0708500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	29973899	29973985	.	+	.	Parent=Os06t0708500-02
Chr06	irgsp1_rep	CDS	29973986	29974099	.	+	0	Parent=Os06t0708500-02
Chr06	irgsp1_rep	CDS	29974349	29974427	.	+	0	Parent=Os06t0708500-02
Chr06	irgsp1_rep	CDS	29974824	29974871	.	+	2	Parent=Os06t0708500-02
Chr06	irgsp1_rep	CDS	29974965	29974988	.	+	2	Parent=Os06t0708500-02
Chr06	irgsp1_rep	CDS	29975455	29975637	.	+	2	Parent=Os06t0708500-02
Chr06	irgsp1_rep	CDS	29975746	29975821	.	+	2	Parent=Os06t0708500-02
Chr06	irgsp1_rep	CDS	29975921	29976059	.	+	1	Parent=Os06t0708500-02
Chr06	irgsp1_rep	three_prime_UTR	29976060	29976322	.	+	.	Parent=Os06t0708500-02
Chr06	irgsp1_rep	mRNA	29976876	29977647	.	+	.	ID=Os06t0708600-01;Name=Os06t0708600-01;Locus_id=Os06g0708600;Note=Zinc finger%2C C2H2-like domain containing protein.;Transcript_evidence=AK100915 (DDBJ%2C Best hit);ORF_evidence=E4MXX2 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J023133D21;Expression=AK100915;TENOR=Os06t0708600-01;KEGG=Os06t0708600-01
Chr06	irgsp1_rep	five_prime_UTR	29976876	29976983	.	+	.	Parent=Os06t0708600-01
Chr06	irgsp1_rep	CDS	29976984	29977328	.	+	0	Parent=Os06t0708600-01
Chr06	irgsp1_rep	three_prime_UTR	29977329	29977647	.	+	.	Parent=Os06t0708600-01
Chr06	irgsp1_rep	mRNA	29978862	29981991	.	-	.	ID=Os06t0708700-01;Name=Os06t0708700-01;Locus_id=Os06g0708700;Note=Similar to Nodulin-like protein.;Transcript_evidence=AK067151 (DDBJ%2C Best hit);ORF_evidence=B6SKJ2 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=J013098O11;Expression=AK067151;TENOR=Os06t0708700-01;KEGG=Os06t0708700-01
Chr06	irgsp1_rep	five_prime_UTR	29981836	29981991	.	-	.	Parent=Os06t0708700-01
Chr06	irgsp1_rep	CDS	29981501	29981835	.	-	0	Parent=Os06t0708700-01
Chr06	irgsp1_rep	CDS	29981312	29981428	.	-	1	Parent=Os06t0708700-01
Chr06	irgsp1_rep	CDS	29980911	29981217	.	-	1	Parent=Os06t0708700-01
Chr06	irgsp1_rep	CDS	29980635	29980790	.	-	0	Parent=Os06t0708700-01
Chr06	irgsp1_rep	CDS	29980361	29980512	.	-	0	Parent=Os06t0708700-01
Chr06	irgsp1_rep	CDS	29979781	29979955	.	-	1	Parent=Os06t0708700-01
Chr06	irgsp1_rep	three_prime_UTR	29978862	29979780	.	-	.	Parent=Os06t0708700-01
Chr06	irgsp1_rep	mRNA	29978898	29981930	.	-	.	ID=Os06t0708700-02;Name=Os06t0708700-02;Locus_id=Os06g0708700;Note=Similar to Nodulin-like protein.;Transcript_evidence=AK120104 (DDBJ%2C Best hit);ORF_evidence=B6SKJ2 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=J013022P08;Expression=AK120104;TENOR=Os06t0708700-02;KEGG=Os06t0708700-02
Chr06	irgsp1_rep	five_prime_UTR	29981836	29981930	.	-	.	Parent=Os06t0708700-02
Chr06	irgsp1_rep	CDS	29981501	29981835	.	-	0	Parent=Os06t0708700-02
Chr06	irgsp1_rep	CDS	29981312	29981428	.	-	1	Parent=Os06t0708700-02
Chr06	irgsp1_rep	CDS	29980911	29981217	.	-	1	Parent=Os06t0708700-02
Chr06	irgsp1_rep	CDS	29980635	29980790	.	-	0	Parent=Os06t0708700-02
Chr06	irgsp1_rep	CDS	29980361	29980512	.	-	0	Parent=Os06t0708700-02
Chr06	irgsp1_rep	CDS	29979781	29979955	.	-	1	Parent=Os06t0708700-02
Chr06	irgsp1_rep	three_prime_UTR	29979459	29979780	.	-	.	Parent=Os06t0708700-02
Chr06	irgsp1_rep	three_prime_UTR	29978898	29979205	.	-	.	Parent=Os06t0708700-02
Chr06	irgsp1_rep	mRNA	29978814	29980612	.	-	.	ID=Os06t0708700-03;Name=Os06t0708700-03;Locus_id=Os06g0708700;Note=Similar to nodulin-like protein.;Transcript_evidence=AK071974 (DDBJ%2C Best hit);ORF_evidence=B6SKJ2 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=J013077M09;Expression=AK071974;TENOR=Os06t0708700-03;KEGG=Os06t0708700-03
Chr06	irgsp1_rep	five_prime_UTR	29980549	29980612	.	-	.	Parent=Os06t0708700-03
Chr06	irgsp1_rep	CDS	29980213	29980548	.	-	0	Parent=Os06t0708700-03
Chr06	irgsp1_rep	three_prime_UTR	29978814	29980212	.	-	.	Parent=Os06t0708700-03
Chr06	irgsp1_rep	mRNA	29987774	29989156	.	-	.	ID=Os06t0708832-00;Name=Os06t0708832-00;Locus_id=Os06g0708832;Note=Similar to arogenate dehydrogenase.;Transcript_evidence=AK355541 (DDBJ);ORF_evidence=NP_001147429.1 (RefSeq);GO=Biological Process: tyrosine biosynthetic process (GO:0006571),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: prephenate dehydrogenase (NADP+) activity (GO:0004665),Molecular Function: prephenate dehydrogenase activity (GO:0008977);InterPro=Prephenate dehydrogenase (IPR003099),Arogenate/prephenate dehydrogenase (IPR012070),NAD(P)-binding domain (IPR016040);TENOR=Os06t0708832-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	29989102	29989156	.	-	.	Parent=Os06t0708832-00
Chr06	irgsp1_rep	CDS	29988040	29989101	.	-	0	Parent=Os06t0708832-00
Chr06	irgsp1_rep	three_prime_UTR	29987774	29988039	.	-	.	Parent=Os06t0708832-00
Chr06	irgsp1_rep	mRNA	29990050	29994451	.	-	.	ID=Os06t0708900-01;Name=Os06t0708900-01;Locus_id=Os06g0708900;Note=Similar to zinc knuckle (CCHC-type) family protein.;Transcript_evidence=AK100402 (DDBJ%2C Best hit);ORF_evidence=NP_193654.2 (RefSeq);InterPro=CBF1-interacting co-repressor CIR%2C N-terminal (IPR019339);NIAS_FLcDNA=J023086O10;Expression=AK100402;TENOR=Os06t0708900-01;KEGG=Os06t0708900-01
Chr06	irgsp1_rep	five_prime_UTR	29994363	29994451	.	-	.	Parent=Os06t0708900-01
Chr06	irgsp1_rep	CDS	29994078	29994362	.	-	0	Parent=Os06t0708900-01
Chr06	irgsp1_rep	CDS	29993332	29993425	.	-	0	Parent=Os06t0708900-01
Chr06	irgsp1_rep	CDS	29993091	29993197	.	-	2	Parent=Os06t0708900-01
Chr06	irgsp1_rep	three_prime_UTR	29993078	29993090	.	-	.	Parent=Os06t0708900-01
Chr06	irgsp1_rep	three_prime_UTR	29991918	29992119	.	-	.	Parent=Os06t0708900-01
Chr06	irgsp1_rep	three_prime_UTR	29991405	29991519	.	-	.	Parent=Os06t0708900-01
Chr06	irgsp1_rep	three_prime_UTR	29990050	29991287	.	-	.	Parent=Os06t0708900-01
Chr06	irgsp1_rep	mRNA	29994592	29996120	.	+	.	ID=Os06t0709000-01;Name=Os06t0709000-01;Locus_id=Os06g0709000;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK068653 (DDBJ%2C Best hit);ORF_evidence=NP_001147429.1 (RefSeq);GO=Biological Process: tyrosine biosynthetic process (GO:0006571),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: prephenate dehydrogenase (NADP+) activity (GO:0004665),Molecular Function: prephenate dehydrogenase activity (GO:0008977);InterPro=Prephenate dehydrogenase (IPR003099),Arogenate/prephenate dehydrogenase (IPR012070),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013159D01;Expression=AK068653;TENOR=Os06t0709000-01;KEGG=Os06t0709000-01
Chr06	irgsp1_rep	five_prime_UTR	29994592	29994668	.	+	.	Parent=Os06t0709000-01
Chr06	irgsp1_rep	CDS	29994669	29995823	.	+	0	Parent=Os06t0709000-01
Chr06	irgsp1_rep	three_prime_UTR	29995824	29996120	.	+	.	Parent=Os06t0709000-01
Chr06	irgsp1_rep	mRNA	29996311	29999057	.	+	.	ID=Os06t0709100-01;Name=Os06t0709100-01;Locus_id=Os06g0709100;Oryzabase Gene Symbol Synonym(s)=OsFbox327%2C Os_F0126;Oryzabase Gene Name Synonym(s)=F-box protein 327;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK059732 (DDBJ%2C Best hit),AK103683 (DDBJ%2C Best hit);ORF_evidence=B6TRX2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=006-201-G12,J033136F06;Oryzabase=17103;TENOR=Os06t0709100-01
Chr06	irgsp1_rep	five_prime_UTR	29996311	29996382	.	+	.	Parent=Os06t0709100-01
Chr06	irgsp1_rep	CDS	29996383	29996577	.	+	0	Parent=Os06t0709100-01
Chr06	irgsp1_rep	CDS	29996655	29996968	.	+	0	Parent=Os06t0709100-01
Chr06	irgsp1_rep	CDS	29997065	29997137	.	+	1	Parent=Os06t0709100-01
Chr06	irgsp1_rep	CDS	29997418	29997528	.	+	0	Parent=Os06t0709100-01
Chr06	irgsp1_rep	CDS	29997626	29997800	.	+	0	Parent=Os06t0709100-01
Chr06	irgsp1_rep	CDS	29997893	29998020	.	+	2	Parent=Os06t0709100-01
Chr06	irgsp1_rep	CDS	29998211	29998271	.	+	0	Parent=Os06t0709100-01
Chr06	irgsp1_rep	CDS	29998794	29998864	.	+	2	Parent=Os06t0709100-01
Chr06	irgsp1_rep	three_prime_UTR	29998865	29999057	.	+	.	Parent=Os06t0709100-01
Chr06	irgsp1_rep	mRNA	29996437	29999221	.	+	.	ID=Os06t0709100-02;Name=Os06t0709100-02;Locus_id=Os06g0709100;Oryzabase Gene Symbol Synonym(s)=OsFbox327%2C Os_F0126;Oryzabase Gene Name Synonym(s)=F-box protein 327;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK070881 (DDBJ%2C Best hit);ORF_evidence=B6TRX2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023065H01;Oryzabase=17103;Expression=AK070881;TENOR=Os06t0709100-02;KEGG=Os06t0709100-02
Chr06	irgsp1_rep	CDS	29996437	29996577	.	+	0	Parent=Os06t0709100-02
Chr06	irgsp1_rep	CDS	29996655	29996968	.	+	0	Parent=Os06t0709100-02
Chr06	irgsp1_rep	CDS	29997065	29997137	.	+	1	Parent=Os06t0709100-02
Chr06	irgsp1_rep	CDS	29997418	29997528	.	+	0	Parent=Os06t0709100-02
Chr06	irgsp1_rep	CDS	29997626	29997800	.	+	0	Parent=Os06t0709100-02
Chr06	irgsp1_rep	CDS	29997893	29998020	.	+	2	Parent=Os06t0709100-02
Chr06	irgsp1_rep	CDS	29998211	29998271	.	+	0	Parent=Os06t0709100-02
Chr06	irgsp1_rep	CDS	29998794	29998864	.	+	2	Parent=Os06t0709100-02
Chr06	irgsp1_rep	three_prime_UTR	29998865	29999221	.	+	.	Parent=Os06t0709100-02
Chr06	irgsp1_rep	mRNA	30007708	30010500	.	-	.	ID=Os06t0709400-01;Name=Os06t0709400-01;Locus_id=Os06g0709400;Note=Conserved hypothetical protein.;Transcript_evidence=AK108588 (DDBJ%2C Best hit);ORF_evidence=A3CGK2 (UniProt);NIAS_FLcDNA=002-146-C05;TENOR=Os06t0709400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	30010499	30010500	.	-	.	Parent=Os06t0709400-01
Chr06	irgsp1_rep	CDS	30009704	30010498	.	-	0	Parent=Os06t0709400-01
Chr06	irgsp1_rep	three_prime_UTR	30009139	30009703	.	-	.	Parent=Os06t0709400-01
Chr06	irgsp1_rep	three_prime_UTR	30007708	30007767	.	-	.	Parent=Os06t0709400-01
Chr06	irgsp1_rep	mRNA	30033145	30033722	.	-	.	ID=Os06t0710001-00;Name=Os06t0710001-00;Locus_id=Os06g0710001;Oryzabase Gene Symbol Synonym(s)=OsCEP7%2C CEP7%2C OsCEP7.1%2C CEP7.1;Oryzabase Gene Name Synonym(s)=C-TERMINALLY ENCODED PEPTIDE 7;Note=Hypothetical conserved gene.;Transcript_evidence=AK249657 (DDBJ);ORF_evidence=Q5Z9G7 (UniProt);Oryzabase=18603;TENOR=Os06t0710001-00;KEGG=Os06t0710001-00
Chr06	irgsp1_rep	five_prime_UTR	30033722	30033722	.	-	.	Parent=Os06t0710001-00
Chr06	irgsp1_rep	CDS	30033491	30033721	.	-	0	Parent=Os06t0710001-00
Chr06	irgsp1_rep	three_prime_UTR	30033145	30033490	.	-	.	Parent=Os06t0710001-00
Chr06	irgsp1_rep	mRNA	30036069	30037729	.	-	.	ID=Os06t0710300-01;Name=Os06t0710300-01;Locus_id=Os06g0710300;Note=Uncharacterised conserved protein UCP022348 domain containing protein.;Transcript_evidence=AK121344 (DDBJ%2C Best hit);ORF_evidence=B6U4B2 (UniProt);InterPro=Uncharacterised protein family UPF0114 (IPR005134),Uncharacterised protein family UPF0114%2C plant (IPR016804);NIAS_FLcDNA=J023121B11;Expression=AK121344;TENOR=Os06t0710300-01;KEGG=Os06t0710300-01
Chr06	irgsp1_rep	five_prime_UTR	30037424	30037729	.	-	.	Parent=Os06t0710300-01
Chr06	irgsp1_rep	CDS	30037070	30037423	.	-	0	Parent=Os06t0710300-01
Chr06	irgsp1_rep	CDS	30036916	30037000	.	-	0	Parent=Os06t0710300-01
Chr06	irgsp1_rep	CDS	30036569	30036696	.	-	2	Parent=Os06t0710300-01
Chr06	irgsp1_rep	CDS	30036277	30036483	.	-	0	Parent=Os06t0710300-01
Chr06	irgsp1_rep	three_prime_UTR	30036069	30036276	.	-	.	Parent=Os06t0710300-01
Chr06	irgsp1_rep	mRNA	30036322	30037002	.	+	.	ID=Os06t0710401-00;Name=Os06t0710401-00;Locus_id=Os06g0710401;Note=Non-protein coding transcript.;Transcript_evidence=AK330826 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0710401-00
Chr06	irgsp1_rep	exon	30036322	30036501	.	+	.	Parent=Os06t0710401-00
Chr06	irgsp1_rep	exon	30036585	30036677	.	+	.	Parent=Os06t0710401-00
Chr06	irgsp1_rep	exon	30036899	30037002	.	+	.	Parent=Os06t0710401-00
Chr06	irgsp1_rep	mRNA	30038570	30039576	.	-	.	ID=Os06t0710500-01;Name=Os06t0710500-01;Locus_id=Os06g0710500;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK062418 (DDBJ%2C Best hit);ORF_evidence=B8B2G5 (UniProt);NIAS_FLcDNA=001-102-F09;Expression=AK062418;TENOR=Os06t0710500-01;KEGG=Os06t0710500-01
Chr06	irgsp1_rep	five_prime_UTR	30039501	30039576	.	-	.	Parent=Os06t0710500-01
Chr06	irgsp1_rep	CDS	30038748	30039500	.	-	0	Parent=Os06t0710500-01
Chr06	irgsp1_rep	three_prime_UTR	30038570	30038747	.	-	.	Parent=Os06t0710500-01
Chr06	irgsp1_rep	mRNA	30051761	30053353	.	-	.	ID=Os06t0710700-01;Name=Os06t0710700-01;Locus_id=Os06g0710700;Note=Similar to Benzoyl coenzyme A: benzyl alcohol benzoyl transferase (Benzoyl- CoA:benzyl alcohol/phenylethanol benzoyltransferase).;Transcript_evidence=AK318526 (DDBJ%2C Best hit);ORF_evidence=NP_001152518.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J065121D20;TENOR=Os06t0710700-01;KEGG=Os06t0710700-01
Chr06	irgsp1_rep	five_prime_UTR	30053281	30053353	.	-	.	Parent=Os06t0710700-01
Chr06	irgsp1_rep	CDS	30051928	30053280	.	-	0	Parent=Os06t0710700-01
Chr06	irgsp1_rep	three_prime_UTR	30051761	30051927	.	-	.	Parent=Os06t0710700-01
Chr06	irgsp1_rep	mRNA	30059823	30062859	.	+	.	ID=Os06t0710800-01;Name=Os06t0710800-01;Locus_id=Os06g0710800;RAP-DB Gene Symbol Synonym(s)=OsSLC1;RAP-DB Gene Name Synonym(s)=seedling-lethal chlorosis 1;Note=Pentatricopeptide repeat (PPR) protein%2C Intron splicing%2C Early chloroplast development;Transcript_evidence=AK063542;ORF_evidence=Q5Z9G2;GO=Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical domain superfamily (IPR011990),Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=001-117-C11;Manual Curation=April 20%2C 2020;Literature_PMID=32297039;Expression=AK063542;TENOR=Os06t0710800-01;KEGG=Os06t0710800-01;Subcellular location=chloroplast (GO:0009507)
Chr06	irgsp1_rep	CDS	30059823	30060959	.	+	0	Parent=Os06t0710800-01
Chr06	irgsp1_rep	CDS	30061533	30061685	.	+	0	Parent=Os06t0710800-01
Chr06	irgsp1_rep	CDS	30061805	30061874	.	+	0	Parent=Os06t0710800-01
Chr06	irgsp1_rep	CDS	30062161	30062279	.	+	2	Parent=Os06t0710800-01
Chr06	irgsp1_rep	three_prime_UTR	30062280	30062859	.	+	.	Parent=Os06t0710800-01
Chr06	irgsp1_rep	mRNA	30063329	30063659	.	-	.	ID=Os06t0710850-00;Name=Os06t0710850-00;Locus_id=Os06g0710850;Note=Non-protein coding transcript.;Transcript_evidence=EU950496 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0710850-00
Chr06	irgsp1_rep	exon	30063531	30063659	.	-	.	Parent=Os06t0710850-00
Chr06	irgsp1_rep	exon	30063329	30063441	.	-	.	Parent=Os06t0710850-00
Chr06	irgsp1_rep	mRNA	30064110	30065313	.	-	.	ID=Os06t0710900-01;Name=Os06t0710900-01;Locus_id=Os06g0710900;Note=Conserved hypothetical protein.;Transcript_evidence=AK073326 (DDBJ%2C Best hit);ORF_evidence=A2YGW4 (UniProt);NIAS_FLcDNA=J033028E03;Expression=AK073326;TENOR=Os06t0710900-01;KEGG=Os06t0710900-01
Chr06	irgsp1_rep	five_prime_UTR	30065217	30065313	.	-	.	Parent=Os06t0710900-01
Chr06	irgsp1_rep	CDS	30064341	30065216	.	-	0	Parent=Os06t0710900-01
Chr06	irgsp1_rep	three_prime_UTR	30064110	30064340	.	-	.	Parent=Os06t0710900-01
Chr06	irgsp1_rep	mRNA	30066045	30066843	.	-	.	ID=Os06t0711000-01;Name=Os06t0711000-01;Locus_id=Os06g0711000;Note=Conserved hypothetical protein.;Transcript_evidence=AK063185 (DDBJ%2C Best hit);ORF_evidence=B8B2G6 (UniProt);NIAS_FLcDNA=001-112-B03;Expression=AK063185;TENOR=Os06t0711000-01;KEGG=Os06t0711000-01
Chr06	irgsp1_rep	five_prime_UTR	30066792	30066843	.	-	.	Parent=Os06t0711000-01
Chr06	irgsp1_rep	CDS	30066165	30066791	.	-	0	Parent=Os06t0711000-01
Chr06	irgsp1_rep	three_prime_UTR	30066045	30066164	.	-	.	Parent=Os06t0711000-01
Chr06	irgsp1_rep	mRNA	30069689	30072870	.	+	.	ID=Os06t0711100-01;Name=Os06t0711100-01;Locus_id=Os06g0711100;Note=Conserved hypothetical protein.;Transcript_evidence=AK069893 (DDBJ%2C Best hit);ORF_evidence=B8B2G7 (UniProt);NIAS_FLcDNA=J023039F13;Expression=AK069893;TENOR=Os06t0711100-01;KEGG=Os06t0711100-01
Chr06	irgsp1_rep	five_prime_UTR	30069689	30069978	.	+	.	Parent=Os06t0711100-01
Chr06	irgsp1_rep	CDS	30069979	30070276	.	+	0	Parent=Os06t0711100-01
Chr06	irgsp1_rep	CDS	30070371	30070556	.	+	2	Parent=Os06t0711100-01
Chr06	irgsp1_rep	CDS	30070669	30070824	.	+	2	Parent=Os06t0711100-01
Chr06	irgsp1_rep	CDS	30071458	30071595	.	+	2	Parent=Os06t0711100-01
Chr06	irgsp1_rep	CDS	30071690	30071814	.	+	2	Parent=Os06t0711100-01
Chr06	irgsp1_rep	three_prime_UTR	30071815	30071819	.	+	.	Parent=Os06t0711100-01
Chr06	irgsp1_rep	three_prime_UTR	30072544	30072870	.	+	.	Parent=Os06t0711100-01
Chr06	irgsp1_rep	mRNA	30069731	30073756	.	+	.	ID=Os06t0711100-02;Name=Os06t0711100-02;Locus_id=Os06g0711100;Note=Conserved hypothetical protein.;Transcript_evidence=AK100379 (DDBJ%2C Best hit);ORF_evidence=B8B2G7 (UniProt);NIAS_FLcDNA=J023085C01;Expression=AK100379;TENOR=Os06t0711100-02;KEGG=Os06t0711100-02
Chr06	irgsp1_rep	five_prime_UTR	30069731	30069978	.	+	.	Parent=Os06t0711100-02
Chr06	irgsp1_rep	CDS	30069979	30070276	.	+	0	Parent=Os06t0711100-02
Chr06	irgsp1_rep	CDS	30070371	30070556	.	+	2	Parent=Os06t0711100-02
Chr06	irgsp1_rep	CDS	30070669	30070824	.	+	2	Parent=Os06t0711100-02
Chr06	irgsp1_rep	CDS	30071458	30071595	.	+	2	Parent=Os06t0711100-02
Chr06	irgsp1_rep	CDS	30071690	30071814	.	+	2	Parent=Os06t0711100-02
Chr06	irgsp1_rep	three_prime_UTR	30071815	30071819	.	+	.	Parent=Os06t0711100-02
Chr06	irgsp1_rep	three_prime_UTR	30072544	30073756	.	+	.	Parent=Os06t0711100-02
Chr06	irgsp1_rep	mRNA	30074600	30075498	.	+	.	ID=Os06t0711200-01;Name=Os06t0711200-01;Locus_id=Os06g0711200;Note=Conserved hypothetical protein.;Transcript_evidence=AK108753 (DDBJ%2C Best hit);ORF_evidence=A2YGW6 (UniProt);NIAS_FLcDNA=002-150-F09;Expression=AK108753;TENOR=Os06t0711200-01;KEGG=Os06t0711200-01
Chr06	irgsp1_rep	five_prime_UTR	30074600	30074689	.	+	.	Parent=Os06t0711200-01
Chr06	irgsp1_rep	CDS	30074690	30074921	.	+	0	Parent=Os06t0711200-01
Chr06	irgsp1_rep	CDS	30075104	30075387	.	+	2	Parent=Os06t0711200-01
Chr06	irgsp1_rep	three_prime_UTR	30075388	30075498	.	+	.	Parent=Os06t0711200-01
Chr06	irgsp1_rep	mRNA	30087165	30089572	.	+	.	ID=Os06t0711600-01;Name=Os06t0711600-01;Locus_id=Os06g0711600;RAP-DB Gene Symbol Synonym(s)=OsSYF2;RAP-DB Gene Name Synonym(s)=Synthetic lethal with cdc forty 2;Note=Pre-mRNA splicing factor%2C Accessory spliceosome protein%2C Regulation of grain length and panicle architecture;Transcript_evidence=AK064384;ORF_evidence=Q5Z7Y7;InterPro=mRNA splicing factor SYF2 (IPR013260);NIAS_FLcDNA=002-108-E04;Manual Curation=September 23%2C 2020;Literature_PMID=32910367;Expression=AK064384;TENOR=Os06t0711600-01;KEGG=Os06t0711600-01;Subcellular location=nucleus (GO:0005634)
Chr06	irgsp1_rep	five_prime_UTR	30087165	30087224	.	+	.	Parent=Os06t0711600-01
Chr06	irgsp1_rep	CDS	30087225	30087465	.	+	0	Parent=Os06t0711600-01
Chr06	irgsp1_rep	CDS	30087647	30087822	.	+	2	Parent=Os06t0711600-01
Chr06	irgsp1_rep	CDS	30087912	30088152	.	+	0	Parent=Os06t0711600-01
Chr06	irgsp1_rep	CDS	30088850	30088986	.	+	2	Parent=Os06t0711600-01
Chr06	irgsp1_rep	CDS	30089075	30089302	.	+	0	Parent=Os06t0711600-01
Chr06	irgsp1_rep	three_prime_UTR	30089303	30089572	.	+	.	Parent=Os06t0711600-01
Chr06	irgsp1_rep	mRNA	30087193	30089558	.	+	.	ID=Os06t0711600-02;Name=Os06t0711600-02;Locus_id=Os06g0711600;Note=mRNA splicing factor SYF2 family protein.;Transcript_evidence=AK102831 (DDBJ%2C Best hit);ORF_evidence=A6N0B8 (UniProt);InterPro=mRNA splicing factor SYF2 (IPR013260);NIAS_FLcDNA=J033109G07;Expression=AK102831;TENOR=Os06t0711600-02;KEGG=Os06t0711600-02
Chr06	irgsp1_rep	five_prime_UTR	30087193	30087224	.	+	.	Parent=Os06t0711600-02
Chr06	irgsp1_rep	CDS	30087225	30087465	.	+	0	Parent=Os06t0711600-02
Chr06	irgsp1_rep	CDS	30087647	30087822	.	+	2	Parent=Os06t0711600-02
Chr06	irgsp1_rep	CDS	30087912	30088152	.	+	0	Parent=Os06t0711600-02
Chr06	irgsp1_rep	CDS	30088850	30088986	.	+	2	Parent=Os06t0711600-02
Chr06	irgsp1_rep	CDS	30089075	30089302	.	+	0	Parent=Os06t0711600-02
Chr06	irgsp1_rep	three_prime_UTR	30089303	30089558	.	+	.	Parent=Os06t0711600-02
Chr06	irgsp1_rep	mRNA	30092166	30093523	.	-	.	ID=Os06t0711700-00;Name=Os06t0711700-00;Locus_id=Os06g0711700;Note=Kelch-type beta propeller domain containing protein.;Transcript_evidence=EU956453 (DDBJ);ORF_evidence=NP_001058552.2 (RefSeq);InterPro=Galactose oxidase%2C beta-propeller (IPR015916);TENOR=Os06t0711700-00;KEGG=Os06t0711700-00
Chr06	irgsp1_rep	five_prime_UTR	30093480	30093523	.	-	.	Parent=Os06t0711700-00
Chr06	irgsp1_rep	CDS	30092166	30093479	.	-	0	Parent=Os06t0711700-00
Chr06	irgsp1_rep	mRNA	30105940	30106833	.	-	.	ID=Os06t0711800-01;Name=Os06t0711800-01;Locus_id=Os06g0711800;Note=Pectinesterase inhibitor domain containing protein.;Transcript_evidence=AK069642 (DDBJ%2C Best hit);ORF_evidence=NP_001167668.1 (RefSeq);GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);NIAS_FLcDNA=J023026F11;Expression=AK069642;TENOR=Os06t0711800-01;KEGG=Os06t0711800-01
Chr06	irgsp1_rep	five_prime_UTR	30106755	30106833	.	-	.	Parent=Os06t0711800-01
Chr06	irgsp1_rep	CDS	30106152	30106754	.	-	0	Parent=Os06t0711800-01
Chr06	irgsp1_rep	three_prime_UTR	30105940	30106151	.	-	.	Parent=Os06t0711800-01
Chr06	irgsp1_rep	mRNA	30113940	30115488	.	+	.	ID=Os06t0711900-01;Name=Os06t0711900-01;Locus_id=Os06g0711900;Oryzabase Gene Symbol Synonym(s)=OsLTPG24%2C OsLTPg24%2C OsLtpVIII.1%2C LTPG24%2C LTPg24%2C LtpVIII.1;Oryzabase Gene Name Synonym(s)=GPI-anchored non-specific lipid transfer protein 24%2C type G nsLTP 24%2C type G non-specific lipid transfer protein 24;Note=Bifunctional inhibitor/plant lipid transfer protein/seed storage domain containing protein.;Transcript_evidence=AK105838 (DDBJ%2C Best hit);ORF_evidence=A2YGX0 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=001-203-F04;Oryzabase=13508;Expression=AK105838;TENOR=Os06t0711900-01;KEGG=Os06t0711900-01
Chr06	irgsp1_rep	five_prime_UTR	30113940	30114030	.	+	.	Parent=Os06t0711900-01
Chr06	irgsp1_rep	CDS	30114031	30114516	.	+	0	Parent=Os06t0711900-01
Chr06	irgsp1_rep	three_prime_UTR	30114517	30115488	.	+	.	Parent=Os06t0711900-01
Chr06	irgsp1_rep	mRNA	30117755	30118750	.	+	.	ID=Os06t0712200-01;Name=Os06t0712200-01;Locus_id=Os06g0712200;Note=NUDIX domain containing protein.;Transcript_evidence=AK061313 (DDBJ%2C Best hit);ORF_evidence=A2YGX1 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=NUDIX hydrolase domain (IPR000086),NUDIX hydrolase domain-like (IPR015797);NIAS_FLcDNA=006-302-C10;Expression=AK061313;TENOR=Os06t0712200-01;KEGG=Os06t0712200-01
Chr06	irgsp1_rep	five_prime_UTR	30117755	30117821	.	+	.	Parent=Os06t0712200-01
Chr06	irgsp1_rep	CDS	30117822	30118547	.	+	0	Parent=Os06t0712200-01
Chr06	irgsp1_rep	three_prime_UTR	30118548	30118750	.	+	.	Parent=Os06t0712200-01
Chr06	irgsp1_rep	mRNA	30122730	30123737	.	-	.	ID=Os06t0712250-00;Name=Os06t0712250-00;Locus_id=Os06g0712250;Note=Hypothetical conserved gene.;Transcript_evidence=CT832454 (DDBJ%2C Best hit);ORF_evidence=NP_001144189.1 (RefSeq);TENOR=Os06t0712250-00;KEGG=Os06t0712250-00
Chr06	irgsp1_rep	five_prime_UTR	30123388	30123737	.	-	.	Parent=Os06t0712250-00
Chr06	irgsp1_rep	CDS	30122845	30123387	.	-	0	Parent=Os06t0712250-00
Chr06	irgsp1_rep	three_prime_UTR	30122730	30122844	.	-	.	Parent=Os06t0712250-00
Chr06	irgsp1_rep	mRNA	30122866	30127794	.	+	.	ID=Os06t0712300-01;Name=Os06t0712300-01;Locus_id=Os06g0712300;Note=EF-Hand type domain containing protein.;Transcript_evidence=AK070744 (DDBJ%2C Best hit);ORF_evidence=E6NU22 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Phospholipid/glycerol acyltransferase (IPR002123),EF-hand-like domain (IPR011992),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J023063J22;Expression=AK070744;TENOR=Os06t0712300-01;KEGG=Os06t0712300-01
Chr06	irgsp1_rep	five_prime_UTR	30122866	30122908	.	+	.	Parent=Os06t0712300-01
Chr06	irgsp1_rep	CDS	30122909	30123402	.	+	0	Parent=Os06t0712300-01
Chr06	irgsp1_rep	CDS	30124627	30124807	.	+	1	Parent=Os06t0712300-01
Chr06	irgsp1_rep	CDS	30124907	30124966	.	+	0	Parent=Os06t0712300-01
Chr06	irgsp1_rep	CDS	30125387	30125550	.	+	0	Parent=Os06t0712300-01
Chr06	irgsp1_rep	CDS	30125624	30125687	.	+	1	Parent=Os06t0712300-01
Chr06	irgsp1_rep	CDS	30125790	30125858	.	+	0	Parent=Os06t0712300-01
Chr06	irgsp1_rep	CDS	30125961	30126056	.	+	0	Parent=Os06t0712300-01
Chr06	irgsp1_rep	CDS	30126246	30126290	.	+	0	Parent=Os06t0712300-01
Chr06	irgsp1_rep	CDS	30126666	30126736	.	+	0	Parent=Os06t0712300-01
Chr06	irgsp1_rep	CDS	30126897	30126963	.	+	1	Parent=Os06t0712300-01
Chr06	irgsp1_rep	CDS	30127051	30127101	.	+	0	Parent=Os06t0712300-01
Chr06	irgsp1_rep	CDS	30127177	30127338	.	+	0	Parent=Os06t0712300-01
Chr06	irgsp1_rep	CDS	30127441	30127587	.	+	0	Parent=Os06t0712300-01
Chr06	irgsp1_rep	three_prime_UTR	30127588	30127794	.	+	.	Parent=Os06t0712300-01
Chr06	irgsp1_rep	mRNA	30127199	30127914	.	+	.	ID=Os06t0712300-02;Name=Os06t0712300-02;Locus_id=Os06g0712300;Note=Hypothetical conserved gene.;Transcript_evidence=AK058857 (DDBJ%2C Best hit);ORF_evidence=B9FQV0 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand-like domain (IPR011992),EF-HAND 2 (IPR018249);NIAS_FLcDNA=001-005-C10;Expression=AK058857;TENOR=Os06t0712300-02;KEGG=Os06t0712300-02
Chr06	irgsp1_rep	five_prime_UTR	30127199	30127200	.	+	.	Parent=Os06t0712300-02
Chr06	irgsp1_rep	CDS	30127201	30127338	.	+	0	Parent=Os06t0712300-02
Chr06	irgsp1_rep	CDS	30127441	30127587	.	+	0	Parent=Os06t0712300-02
Chr06	irgsp1_rep	three_prime_UTR	30127588	30127914	.	+	.	Parent=Os06t0712300-02
Chr06	irgsp1_rep	mRNA	30128199	30134097	.	-	.	ID=Os06t0712400-01;Name=Os06t0712400-01;Locus_id=Os06g0712400;Note=Protein of unknown function DUF544 family protein.;Transcript_evidence=AK067573 (DDBJ%2C Best hit);ORF_evidence=B8B2H1 (UniProt);InterPro=Ubiquitin interacting motif (IPR003903),Protein of unknown function DUF544 (IPR007518);NIAS_FLcDNA=J013108E08;Expression=AK067573;TENOR=Os06t0712400-01;KEGG=Os06t0712400-01
Chr06	irgsp1_rep	five_prime_UTR	30133896	30134097	.	-	.	Parent=Os06t0712400-01
Chr06	irgsp1_rep	CDS	30133685	30133895	.	-	0	Parent=Os06t0712400-01
Chr06	irgsp1_rep	CDS	30133469	30133587	.	-	2	Parent=Os06t0712400-01
Chr06	irgsp1_rep	CDS	30133280	30133386	.	-	0	Parent=Os06t0712400-01
Chr06	irgsp1_rep	CDS	30133103	30133190	.	-	1	Parent=Os06t0712400-01
Chr06	irgsp1_rep	CDS	30131012	30132065	.	-	0	Parent=Os06t0712400-01
Chr06	irgsp1_rep	CDS	30130842	30130896	.	-	2	Parent=Os06t0712400-01
Chr06	irgsp1_rep	CDS	30130672	30130753	.	-	1	Parent=Os06t0712400-01
Chr06	irgsp1_rep	CDS	30130509	30130589	.	-	0	Parent=Os06t0712400-01
Chr06	irgsp1_rep	CDS	30130318	30130422	.	-	0	Parent=Os06t0712400-01
Chr06	irgsp1_rep	CDS	30130187	30130236	.	-	0	Parent=Os06t0712400-01
Chr06	irgsp1_rep	CDS	30129235	30129412	.	-	1	Parent=Os06t0712400-01
Chr06	irgsp1_rep	CDS	30128483	30128539	.	-	0	Parent=Os06t0712400-01
Chr06	irgsp1_rep	three_prime_UTR	30128199	30128482	.	-	.	Parent=Os06t0712400-01
Chr06	irgsp1_rep	mRNA	30128243	30131241	.	-	.	ID=Os06t0712400-02;Name=Os06t0712400-02;Locus_id=Os06g0712400;Note=Similar to predicted protein.;Transcript_evidence=AK104913 (DDBJ%2C Best hit);ORF_evidence=B9FQV1 (UniProt);InterPro=Protein of unknown function DUF544 (IPR007518);NIAS_FLcDNA=001-047-C07;Expression=AK104913;TENOR=Os06t0712400-02;KEGG=Os06t0712400-02
Chr06	irgsp1_rep	five_prime_UTR	30131241	30131241	.	-	.	Parent=Os06t0712400-02
Chr06	irgsp1_rep	CDS	30131012	30131240	.	-	0	Parent=Os06t0712400-02
Chr06	irgsp1_rep	CDS	30130842	30130896	.	-	2	Parent=Os06t0712400-02
Chr06	irgsp1_rep	CDS	30130672	30130753	.	-	1	Parent=Os06t0712400-02
Chr06	irgsp1_rep	CDS	30130509	30130589	.	-	0	Parent=Os06t0712400-02
Chr06	irgsp1_rep	CDS	30130318	30130422	.	-	0	Parent=Os06t0712400-02
Chr06	irgsp1_rep	CDS	30130187	30130236	.	-	0	Parent=Os06t0712400-02
Chr06	irgsp1_rep	CDS	30129235	30129412	.	-	1	Parent=Os06t0712400-02
Chr06	irgsp1_rep	CDS	30128483	30128539	.	-	0	Parent=Os06t0712400-02
Chr06	irgsp1_rep	three_prime_UTR	30128243	30128482	.	-	.	Parent=Os06t0712400-02
Chr06	irgsp1_rep	mRNA	30136547	30141157	.	+	.	ID=Os06t0712500-01;Name=Os06t0712500-01;Locus_id=Os06g0712500;CGSNL Gene Symbol=GAUT3;CGSNL Gene Name=GALACTURONOSYLTRANSFERASE 3;Oryzabase Gene Symbol Synonym(s)=OsGAUT3;Oryzabase Gene Name Synonym(s)=galacturonosyltransferase 3;Note=Similar to Glycosyltransferase QUASIMODO1 (EC 2.4.1.-).;Transcript_evidence=AK068531 (DDBJ%2C Best hit);ORF_evidence=E6NU27 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 8 (IPR002495);NIAS_FLcDNA=J013155D09;Oryzabase=23265;Expression=AK068531;TENOR=Os06t0712500-01;KEGG=Os06t0712500-01
Chr06	irgsp1_rep	five_prime_UTR	30136547	30136702	.	+	.	Parent=Os06t0712500-01
Chr06	irgsp1_rep	five_prime_UTR	30136816	30136858	.	+	.	Parent=Os06t0712500-01
Chr06	irgsp1_rep	CDS	30136859	30136931	.	+	0	Parent=Os06t0712500-01
Chr06	irgsp1_rep	CDS	30138322	30138353	.	+	2	Parent=Os06t0712500-01
Chr06	irgsp1_rep	CDS	30138439	30138499	.	+	0	Parent=Os06t0712500-01
Chr06	irgsp1_rep	CDS	30138596	30138639	.	+	2	Parent=Os06t0712500-01
Chr06	irgsp1_rep	CDS	30138817	30139151	.	+	0	Parent=Os06t0712500-01
Chr06	irgsp1_rep	CDS	30139230	30139587	.	+	1	Parent=Os06t0712500-01
Chr06	irgsp1_rep	CDS	30139685	30140043	.	+	0	Parent=Os06t0712500-01
Chr06	irgsp1_rep	CDS	30140123	30140204	.	+	1	Parent=Os06t0712500-01
Chr06	irgsp1_rep	three_prime_UTR	30140205	30140272	.	+	.	Parent=Os06t0712500-01
Chr06	irgsp1_rep	three_prime_UTR	30140565	30141157	.	+	.	Parent=Os06t0712500-01
Chr06	irgsp1_rep	mRNA	30139262	30140830	.	-	.	ID=Os06t0712550-00;Name=Os06t0712550-00;Locus_id=Os06g0712550;Note=Hypothetical protein.;Transcript_evidence=tplb0056b02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0712550-00
Chr06	irgsp1_rep	five_prime_UTR	30140683	30140830	.	-	.	Parent=Os06t0712550-00
Chr06	irgsp1_rep	CDS	30140534	30140682	.	-	0	Parent=Os06t0712550-00
Chr06	irgsp1_rep	CDS	30140144	30140243	.	-	1	Parent=Os06t0712550-00
Chr06	irgsp1_rep	three_prime_UTR	30139663	30140143	.	-	.	Parent=Os06t0712550-00
Chr06	irgsp1_rep	three_prime_UTR	30139262	30139565	.	-	.	Parent=Os06t0712550-00
Chr06	irgsp1_rep	mRNA	30161499	30162653	.	+	.	ID=Os06t0712600-00;Name=Os06t0712600-00;Locus_id=Os06g0712600;Note=Similar to SHI.;Transcript_evidence=EU959412 (DDBJ);ORF_evidence=NP_001150905.1 (RefSeq);InterPro=Zinc finger%2C lateral root primordium type 1 (IPR006510),Lateral Root Primordium type 1%2C C-terminal (IPR006511),Protein of unknown function DUF702 (IPR007818);TENOR=Os06t0712600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	30161499	30162653	.	+	0	Parent=Os06t0712600-00
Chr06	irgsp1_rep	mRNA	30173627	30177996	.	-	.	ID=Os06t0712700-01;Name=Os06t0712700-01;Locus_id=Os06g0712700;RAP-DB Gene Symbol Synonym(s)=SPW1%2C spw1%2C MADS16%2C OsMADS16;RAP-DB Gene Name Synonym(s)=SUPERWOMAN 1%2C SUPERWOMAN1/OsMADS16%2C SUPERWOMAN1%2C superwoman-1%2C MADS-box transcription factor 16%2C Protein SUPERWOMAN1%2C Protein APETALA3-like;CGSNL Gene Symbol=SPW1;CGSNL Gene Name=SUPERWOMAN 1;Oryzabase Gene Symbol Synonym(s)=SPW1%2C spw1%2C MADS16%2C OsMADS16;Oryzabase Gene Name Synonym(s)=SUPERWOMAN1/OsMADS16%2C SUPERWOMAN1%2C superwoman-1%2C MADS-box transcription factor 16%2C Protein SUPERWOMAN1%2C Protein APETALA3-like;Note=Transcription factor%2C Development of lodicules and stamens;Transcript_evidence=AF424549 (YT-124),AB003323 (Nipponbare);ORF_evidence=Q944S9;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein dimerization activity (GO:0046983),Cellular Component: nucleus (GO:0005634);InterPro=Transcription factor%2C MADS-box (IPR002100),Transcription factor%2C K-box (IPR002487);Manual Curation=February 6%2C 2015;Literature_PMID=12506001,12905025;Oryzabase=2125;TENOR=Os06t0712700-01
Chr06	irgsp1_rep	five_prime_UTR	30177783	30177996	.	-	.	Parent=Os06t0712700-01
Chr06	irgsp1_rep	CDS	30177595	30177782	.	-	0	Parent=Os06t0712700-01
Chr06	irgsp1_rep	CDS	30177427	30177493	.	-	1	Parent=Os06t0712700-01
Chr06	irgsp1_rep	CDS	30177159	30177222	.	-	0	Parent=Os06t0712700-01
Chr06	irgsp1_rep	CDS	30176892	30176989	.	-	2	Parent=Os06t0712700-01
Chr06	irgsp1_rep	CDS	30176402	30176443	.	-	0	Parent=Os06t0712700-01
Chr06	irgsp1_rep	CDS	30174239	30174283	.	-	0	Parent=Os06t0712700-01
Chr06	irgsp1_rep	CDS	30173945	30174115	.	-	0	Parent=Os06t0712700-01
Chr06	irgsp1_rep	three_prime_UTR	30173627	30173944	.	-	.	Parent=Os06t0712700-01
Chr06	irgsp1_rep	mRNA	30183259	30186911	.	+	.	ID=Os06t0712800-01;Name=Os06t0712800-01;Locus_id=Os06g0712800;Oryzabase Gene Symbol Synonym(s)=OsSTA181%2C STA181%2C OsPMT16%2C PMT16;Oryzabase Gene Name Synonym(s)=pectin methyltransferase 16;Note=Similar to Ankyrin-like protein.;Transcript_evidence=AK121236 (DDBJ%2C Best hit);ORF_evidence=NP_190676.1 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Protein of unknown function DUF248%2C methyltransferase putative (IPR004159);NIAS_FLcDNA=J023094P08;Oryzabase=19464;Expression=AK121236;TENOR=Os06t0712800-01;KEGG=Os06t0712800-01
Chr06	irgsp1_rep	five_prime_UTR	30183259	30183937	.	+	.	Parent=Os06t0712800-01
Chr06	irgsp1_rep	five_prime_UTR	30184035	30184125	.	+	.	Parent=Os06t0712800-01
Chr06	irgsp1_rep	CDS	30184126	30184683	.	+	0	Parent=Os06t0712800-01
Chr06	irgsp1_rep	CDS	30184773	30185395	.	+	0	Parent=Os06t0712800-01
Chr06	irgsp1_rep	CDS	30186563	30186725	.	+	1	Parent=Os06t0712800-01
Chr06	irgsp1_rep	three_prime_UTR	30186726	30186911	.	+	.	Parent=Os06t0712800-01
Chr06	irgsp1_rep	mRNA	30183274	30186939	.	+	.	ID=Os06t0712800-02;Name=Os06t0712800-02;Locus_id=Os06g0712800;RAP-DB Gene Symbol Synonym(s)=OsPMT16;RAP-DB Gene Name Synonym(s)=pectin methyltransferase 16;Oryzabase Gene Symbol Synonym(s)=OsSTA181%2C STA181%2C OsPMT16%2C PMT16;Oryzabase Gene Name Synonym(s)=pectin methyltransferase 16;Note=Putative pectin methyltransferase%2C Pistil development during reproductive growth;Transcript_evidence=Inferred from literature;ORF_evidence=A2YGX8 (indica);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=S-adenosyl-L-methionine-dependent methyltransferase (IPR029063),Putative S-adenosyl-L-methionine-dependent methyltransferase (IPR004159);Manual Curation=May 20%2C 2020;Literature_PMID=32425965;Oryzabase=19464
Chr06	irgsp1_rep	CDS	30183274	30184683	.	+	0	Parent=Os06t0712800-02
Chr06	irgsp1_rep	CDS	30184773	30185752	.	+	0	Parent=Os06t0712800-02
Chr06	irgsp1_rep	CDS	30186057	30186251	.	+	1	Parent=Os06t0712800-02
Chr06	irgsp1_rep	CDS	30186361	30186577	.	+	1	Parent=Os06t0712800-02
Chr06	irgsp1_rep	three_prime_UTR	30186578	30186939	.	+	.	Parent=Os06t0712800-02
Chr06	irgsp1_rep	mRNA	30187150	30189238	.	-	.	ID=Os06t0712900-01;Name=Os06t0712900-01;Locus_id=Os06g0712900;Note=tRNA-dihydrouridine synthase domain containing protein.;Transcript_evidence=AK106648 (DDBJ%2C Best hit);ORF_evidence=NP_201523.1 (RefSeq);GO=Biological Process: tRNA processing (GO:0008033),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: tRNA dihydrouridine synthase activity (GO:0017150),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=tRNA-dihydrouridine synthase (IPR001269),Aldolase-type TIM barrel (IPR013785),tRNA-dihydrouridine synthase%2C conserved site (IPR018517);NIAS_FLcDNA=002-113-F05;Expression=AK106648;TENOR=Os06t0712900-01;KEGG=Os06t0712900-01 (EC:1.-.-.-)
Chr06	irgsp1_rep	five_prime_UTR	30189222	30189238	.	-	.	Parent=Os06t0712900-01
Chr06	irgsp1_rep	CDS	30188805	30189221	.	-	0	Parent=Os06t0712900-01
Chr06	irgsp1_rep	CDS	30188353	30188459	.	-	0	Parent=Os06t0712900-01
Chr06	irgsp1_rep	CDS	30187412	30188153	.	-	1	Parent=Os06t0712900-01
Chr06	irgsp1_rep	three_prime_UTR	30187150	30187411	.	-	.	Parent=Os06t0712900-01
Chr06	irgsp1_rep	mRNA	30196103	30197569	.	+	.	ID=Os06t0713000-01;Name=Os06t0713000-01;Locus_id=Os06g0713000;Oryzabase Gene Symbol Synonym(s)=OsBBX22%2C BBX22;Oryzabase Gene Name Synonym(s)=B-box-containing protein 22;Note=Zinc finger%2C B-box domain containing protein.;Transcript_evidence=AK105957 (DDBJ%2C Best hit);ORF_evidence=NP_001150747.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C B-box (IPR000315);NIAS_FLcDNA=001-205-D08;Oryzabase=11652;Expression=AK105957;TENOR=Os06t0713000-01;KEGG=Os06t0713000-01
Chr06	irgsp1_rep	five_prime_UTR	30196103	30196282	.	+	.	Parent=Os06t0713000-01
Chr06	irgsp1_rep	CDS	30196283	30196894	.	+	0	Parent=Os06t0713000-01
Chr06	irgsp1_rep	CDS	30196982	30197296	.	+	0	Parent=Os06t0713000-01
Chr06	irgsp1_rep	three_prime_UTR	30197297	30197569	.	+	.	Parent=Os06t0713000-01
Chr06	irgsp1_rep	mRNA	30203062	30207064	.	-	.	ID=Os06t0713100-01;Name=Os06t0713100-01;Locus_id=Os06g0713100;Note=Protein of unknown function DUF1640 family protein.;Transcript_evidence=AK072606 (DDBJ%2C Best hit);ORF_evidence=B6UC57 (UniProt);InterPro=Protein of unknown function DUF1640 (IPR024461);NIAS_FLcDNA=J023132D01;Expression=AK072606;TENOR=Os06t0713100-01;KEGG=Os06t0713100-01
Chr06	irgsp1_rep	five_prime_UTR	30206888	30207064	.	-	.	Parent=Os06t0713100-01
Chr06	irgsp1_rep	CDS	30206729	30206887	.	-	0	Parent=Os06t0713100-01
Chr06	irgsp1_rep	CDS	30206371	30206502	.	-	0	Parent=Os06t0713100-01
Chr06	irgsp1_rep	CDS	30206227	30206286	.	-	0	Parent=Os06t0713100-01
Chr06	irgsp1_rep	CDS	30204496	30204572	.	-	0	Parent=Os06t0713100-01
Chr06	irgsp1_rep	CDS	30204349	30204405	.	-	1	Parent=Os06t0713100-01
Chr06	irgsp1_rep	CDS	30203523	30203589	.	-	1	Parent=Os06t0713100-01
Chr06	irgsp1_rep	CDS	30203318	30203437	.	-	0	Parent=Os06t0713100-01
Chr06	irgsp1_rep	three_prime_UTR	30203062	30203317	.	-	.	Parent=Os06t0713100-01
Chr06	irgsp1_rep	mRNA	30203316	30206789	.	+	.	ID=Os06t0713201-00;Name=Os06t0713201-00;Locus_id=Os06g0713201;Note=Non-protein coding transcript.;Transcript_evidence=BT087005 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0713201-00
Chr06	irgsp1_rep	exon	30203316	30203600	.	+	.	Parent=Os06t0713201-00
Chr06	irgsp1_rep	exon	30204360	30204407	.	+	.	Parent=Os06t0713201-00
Chr06	irgsp1_rep	exon	30204501	30204566	.	+	.	Parent=Os06t0713201-00
Chr06	irgsp1_rep	exon	30206220	30206283	.	+	.	Parent=Os06t0713201-00
Chr06	irgsp1_rep	exon	30206369	30206498	.	+	.	Parent=Os06t0713201-00
Chr06	irgsp1_rep	exon	30206725	30206789	.	+	.	Parent=Os06t0713201-00
Chr06	irgsp1_rep	mRNA	30221501	30223860	.	+	.	ID=Os06t0713300-01;Name=Os06t0713300-01;Locus_id=Os06g0713300;Note=Conserved hypothetical protein.;Transcript_evidence=AK106687 (DDBJ%2C Best hit);ORF_evidence=A3BFC6 (UniProt);NIAS_FLcDNA=002-114-C03;TENOR=Os06t0713300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	30221501	30221611	.	+	.	Parent=Os06t0713300-01
Chr06	irgsp1_rep	CDS	30221612	30222655	.	+	0	Parent=Os06t0713300-01
Chr06	irgsp1_rep	three_prime_UTR	30222656	30222774	.	+	.	Parent=Os06t0713300-01
Chr06	irgsp1_rep	three_prime_UTR	30223040	30223264	.	+	.	Parent=Os06t0713300-01
Chr06	irgsp1_rep	three_prime_UTR	30223346	30223471	.	+	.	Parent=Os06t0713300-01
Chr06	irgsp1_rep	three_prime_UTR	30223623	30223860	.	+	.	Parent=Os06t0713300-01
Chr06	irgsp1_rep	mRNA	30225297	30230658	.	-	.	ID=Os06t0713400-01;Name=Os06t0713400-01;Locus_id=Os06g0713400;Oryzabase Gene Symbol Synonym(s)=OsFbox328%2C Os_F0254;Oryzabase Gene Name Synonym(s)=F-box protein 328;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK100628 (DDBJ%2C Best hit);ORF_evidence=B9FQV7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023108P04;Oryzabase=17104;Expression=AK100628;TENOR=Os06t0713400-01;KEGG=Os06t0713400-01
Chr06	irgsp1_rep	five_prime_UTR	30230184	30230658	.	-	.	Parent=Os06t0713400-01
Chr06	irgsp1_rep	CDS	30230007	30230183	.	-	0	Parent=Os06t0713400-01
Chr06	irgsp1_rep	CDS	30226094	30226987	.	-	0	Parent=Os06t0713400-01
Chr06	irgsp1_rep	CDS	30225852	30226013	.	-	0	Parent=Os06t0713400-01
Chr06	irgsp1_rep	CDS	30225433	30225744	.	-	0	Parent=Os06t0713400-01
Chr06	irgsp1_rep	three_prime_UTR	30225297	30225432	.	-	.	Parent=Os06t0713400-01
Chr06	irgsp1_rep	mRNA	30225449	30226988	.	+	.	ID=Os06t0713600-00;Name=Os06t0713600-00;Locus_id=Os06g0713600;Note=Non-protein coding transcript.;Transcript_evidence=tplb0032e04 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os06t0713600-00
Chr06	irgsp1_rep	exon	30225449	30225687	.	+	.	Parent=Os06t0713600-00
Chr06	irgsp1_rep	exon	30225809	30226118	.	+	.	Parent=Os06t0713600-00
Chr06	irgsp1_rep	exon	30226217	30226988	.	+	.	Parent=Os06t0713600-00
Chr06	irgsp1_rep	mRNA	30262971	30266841	.	+	.	ID=Os06t0713800-01;Name=Os06t0713800-01;Locus_id=Os06g0713800;CGSNL Gene Symbol=AMY2A;CGSNL Gene Name=ALPHA-AMYLASE 2A;Oryzabase Gene Symbol Synonym(s)=Amy2A*(RAmy2A)%2C AMY1.5%2C AMYC2%2C RAmy2A%2C Amy4%2C Amy2A;Oryzabase Gene Name Synonym(s)=Alpha-amylase2A%2C Alpha-amylase isozyme 2A%2C Alpha-amylase isozyme C2%2C Alpha-amylase-2A%2C Amylase-4;Note=Alpha-amylase isozyme 2A precursor (EC 3.2.1.1) (1%2C4-alpha-D-glucan glucanohydrolase).;Transcript_evidence=AK059671 (DDBJ%2C Best hit),AK101018 (DDBJ%2C Best hit);ORF_evidence=Q0D9J1 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: alpha-amylase activity (GO:0004556),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 13 (IPR006046),Glycosyl hydrolase%2C family 13%2C catalytic domain (IPR006047),Glycosyl hydrolase%2C family 13%2C subfamily%2C catalytic domain (IPR006589),Alpha-amylase%2C C-terminal beta-sheet (IPR012850),Alpha-amylase%2C plant (IPR013775),Glycosyl hydrolase%2C family 13%2C all-beta (IPR013780),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Alpha amylase (IPR015902),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-031-F08,J023149I23;Oryzabase=689;TENOR=Os06t0713800-01
Chr06	irgsp1_rep	five_prime_UTR	30262971	30263087	.	+	.	Parent=Os06t0713800-01
Chr06	irgsp1_rep	CDS	30263088	30263168	.	+	0	Parent=Os06t0713800-01
Chr06	irgsp1_rep	CDS	30263250	30263382	.	+	0	Parent=Os06t0713800-01
Chr06	irgsp1_rep	CDS	30264912	30265732	.	+	2	Parent=Os06t0713800-01
Chr06	irgsp1_rep	CDS	30266276	30266578	.	+	0	Parent=Os06t0713800-01
Chr06	irgsp1_rep	three_prime_UTR	30266579	30266841	.	+	.	Parent=Os06t0713800-01
Chr06	irgsp1_rep	mRNA	30269978	30272787	.	-	.	ID=Os06t0713900-01;Name=Os06t0713900-01;Locus_id=Os06g0713900;Note=Hypothetical conserved gene.;Transcript_evidence=AK242112 (DDBJ%2C Best hit);ORF_evidence=A2YGY3 (UniProt);NIAS_FLcDNA=J075146C02;TENOR=Os06t0713900-01;KEGG=Os06t0713900-01
Chr06	irgsp1_rep	five_prime_UTR	30272682	30272787	.	-	.	Parent=Os06t0713900-01
Chr06	irgsp1_rep	CDS	30272477	30272681	.	-	0	Parent=Os06t0713900-01
Chr06	irgsp1_rep	CDS	30271720	30271889	.	-	2	Parent=Os06t0713900-01
Chr06	irgsp1_rep	CDS	30271284	30271341	.	-	0	Parent=Os06t0713900-01
Chr06	irgsp1_rep	CDS	30270518	30270572	.	-	2	Parent=Os06t0713900-01
Chr06	irgsp1_rep	CDS	30270306	30270426	.	-	1	Parent=Os06t0713900-01
Chr06	irgsp1_rep	three_prime_UTR	30269978	30270305	.	-	.	Parent=Os06t0713900-01
Chr06	irgsp1_rep	mRNA	30274475	30279002	.	-	.	ID=Os06t0714000-01;Name=Os06t0714000-01;Locus_id=Os06g0714000;Note=Uncharacterised protein family UPF0183 domain containing protein.;Transcript_evidence=AK069538 (DDBJ%2C Best hit);ORF_evidence=XP_002439019.1 (RefSeq);InterPro=Uncharacterised protein family UPF0183 (IPR005373);NIAS_FLcDNA=J023020A02;TENOR=Os06t0714000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	30278891	30279002	.	-	.	Parent=Os06t0714000-01
Chr06	irgsp1_rep	CDS	30278689	30278890	.	-	0	Parent=Os06t0714000-01
Chr06	irgsp1_rep	CDS	30278408	30278490	.	-	2	Parent=Os06t0714000-01
Chr06	irgsp1_rep	CDS	30278245	30278319	.	-	0	Parent=Os06t0714000-01
Chr06	irgsp1_rep	CDS	30277821	30277888	.	-	0	Parent=Os06t0714000-01
Chr06	irgsp1_rep	CDS	30277586	30277691	.	-	1	Parent=Os06t0714000-01
Chr06	irgsp1_rep	CDS	30277419	30277479	.	-	0	Parent=Os06t0714000-01
Chr06	irgsp1_rep	CDS	30277138	30277307	.	-	2	Parent=Os06t0714000-01
Chr06	irgsp1_rep	CDS	30276860	30276922	.	-	0	Parent=Os06t0714000-01
Chr06	irgsp1_rep	CDS	30276708	30276755	.	-	0	Parent=Os06t0714000-01
Chr06	irgsp1_rep	CDS	30276008	30276121	.	-	0	Parent=Os06t0714000-01
Chr06	irgsp1_rep	CDS	30275802	30275901	.	-	0	Parent=Os06t0714000-01
Chr06	irgsp1_rep	CDS	30275652	30275725	.	-	2	Parent=Os06t0714000-01
Chr06	irgsp1_rep	CDS	30275118	30275222	.	-	0	Parent=Os06t0714000-01
Chr06	irgsp1_rep	CDS	30274968	30275015	.	-	0	Parent=Os06t0714000-01
Chr06	irgsp1_rep	three_prime_UTR	30274789	30274967	.	-	.	Parent=Os06t0714000-01
Chr06	irgsp1_rep	three_prime_UTR	30274475	30274707	.	-	.	Parent=Os06t0714000-01
Chr06	irgsp1_rep	mRNA	30279463	30281741	.	-	.	ID=Os06t0714100-01;Name=Os06t0714100-01;Locus_id=Os06g0714100;Note=Complex 1 LYR protein family protein.;Transcript_evidence=AK121079 (DDBJ%2C Best hit);ORF_evidence=NP_001148390.1 (RefSeq);NIAS_FLcDNA=J023062M13;Expression=AK121079;TENOR=Os06t0714100-01;KEGG=Os06t0714100-01 (EC:1.6.5.3%2C EC:1.6.99.3)
Chr06	irgsp1_rep	five_prime_UTR	30281674	30281741	.	-	.	Parent=Os06t0714100-01
Chr06	irgsp1_rep	CDS	30281548	30281673	.	-	0	Parent=Os06t0714100-01
Chr06	irgsp1_rep	CDS	30281418	30281459	.	-	0	Parent=Os06t0714100-01
Chr06	irgsp1_rep	CDS	30281210	30281291	.	-	0	Parent=Os06t0714100-01
Chr06	irgsp1_rep	CDS	30280453	30280508	.	-	2	Parent=Os06t0714100-01
Chr06	irgsp1_rep	CDS	30279725	30279760	.	-	0	Parent=Os06t0714100-01
Chr06	irgsp1_rep	three_prime_UTR	30279463	30279724	.	-	.	Parent=Os06t0714100-01
Chr06	irgsp1_rep	mRNA	30301723	30308397	.	+	.	ID=Os06t0714200-01;Name=Os06t0714200-01;Locus_id=Os06g0714200;Oryzabase Gene Symbol Synonym(s)=CAMK;Note=Similar to calcium dependent protein kinase1.;Transcript_evidence=AK243187 (DDBJ%2C Best hit);ORF_evidence=NP_001105740.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),EF-hand-like domain (IPR011992),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J100039E11;Oryzabase=18468;TENOR=Os06t0714200-01;KEGG=Os06t0714200-01 (EC:2.7.11.17)
Chr06	irgsp1_rep	five_prime_UTR	30301723	30301928	.	+	.	Parent=Os06t0714200-01
Chr06	irgsp1_rep	CDS	30301929	30302558	.	+	0	Parent=Os06t0714200-01
Chr06	irgsp1_rep	CDS	30304482	30304612	.	+	0	Parent=Os06t0714200-01
Chr06	irgsp1_rep	CDS	30304888	30304929	.	+	1	Parent=Os06t0714200-01
Chr06	irgsp1_rep	CDS	30305027	30305135	.	+	1	Parent=Os06t0714200-01
Chr06	irgsp1_rep	CDS	30305264	30305342	.	+	0	Parent=Os06t0714200-01
Chr06	irgsp1_rep	CDS	30305675	30305971	.	+	2	Parent=Os06t0714200-01
Chr06	irgsp1_rep	CDS	30306081	30306190	.	+	2	Parent=Os06t0714200-01
Chr06	irgsp1_rep	CDS	30306867	30306971	.	+	0	Parent=Os06t0714200-01
Chr06	irgsp1_rep	CDS	30307102	30307164	.	+	0	Parent=Os06t0714200-01
Chr06	irgsp1_rep	CDS	30307667	30307834	.	+	0	Parent=Os06t0714200-01
Chr06	irgsp1_rep	CDS	30308012	30308149	.	+	0	Parent=Os06t0714200-01
Chr06	irgsp1_rep	three_prime_UTR	30308150	30308397	.	+	.	Parent=Os06t0714200-01
Chr06	irgsp1_rep	mRNA	30314770	30315668	.	-	.	ID=Os06t0714300-01;Name=Os06t0714300-01;Locus_id=Os06g0714300;CGSNL Gene Symbol=SAUR29;CGSNL Gene Name=SMALL AUXIN-UP RNA 29;Oryzabase Gene Symbol Synonym(s)=OsSAUR29;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 29;Note=Auxin responsive SAUR protein family protein.;Transcript_evidence=AK107043 (DDBJ%2C Best hit);ORF_evidence=XP_002318465.1 (RefSeq);InterPro=Auxin responsive SAUR protein (IPR003676);NIAS_FLcDNA=002-121-C06;Oryzabase=9154;Expression=AK107043;TENOR=Os06t0714300-01;KEGG=Os06t0714300-01
Chr06	irgsp1_rep	five_prime_UTR	30315493	30315668	.	-	.	Parent=Os06t0714300-01
Chr06	irgsp1_rep	CDS	30315067	30315492	.	-	0	Parent=Os06t0714300-01
Chr06	irgsp1_rep	three_prime_UTR	30314770	30315066	.	-	.	Parent=Os06t0714300-01
Chr06	irgsp1_rep	mRNA	30314952	30315704	.	+	.	ID=Os06t0714366-00;Name=Os06t0714366-00;Locus_id=Os06g0714366;Note=Hypothetical protein.;Transcript_evidence=EU977023 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0714366-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	30314952	30315162	.	+	.	Parent=Os06t0714366-00
Chr06	irgsp1_rep	CDS	30315163	30315462	.	+	0	Parent=Os06t0714366-00
Chr06	irgsp1_rep	three_prime_UTR	30315463	30315704	.	+	.	Parent=Os06t0714366-00
Chr06	irgsp1_rep	mRNA	30324671	30326113	.	-	.	ID=Os06t0714400-01;Name=Os06t0714400-01;Locus_id=Os06g0714400;Note=Conserved hypothetical protein.;Transcript_evidence=AK108610 (DDBJ%2C Best hit);ORF_evidence=Q5NAL1 (UniProt);NIAS_FLcDNA=002-147-A07;Expression=AK108610;TENOR=Os06t0714400-01;KEGG=Os06t0714400-01
Chr06	irgsp1_rep	five_prime_UTR	30326082	30326113	.	-	.	Parent=Os06t0714400-01
Chr06	irgsp1_rep	CDS	30325830	30326081	.	-	0	Parent=Os06t0714400-01
Chr06	irgsp1_rep	three_prime_UTR	30324671	30325829	.	-	.	Parent=Os06t0714400-01
Chr06	irgsp1_rep	mRNA	30326450	30327594	.	-	.	ID=Os06t0714432-00;Name=Os06t0714432-00;Locus_id=Os06g0714432;Note=Non-protein coding transcript.;Transcript_evidence=CT836310 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os06t0714432-00
Chr06	irgsp1_rep	exon	30326450	30327594	.	-	.	Parent=Os06t0714432-00
Chr06	irgsp1_rep	mRNA	30332480	30336108	.	+	.	ID=Os06t0714500-01;Name=Os06t0714500-01;Locus_id=Os06g0714500;Note=ATPase%2C AAA-type%2C core domain containing protein.;Transcript_evidence=AK100047 (DDBJ%2C Best hit),AK119628 (DDBJ%2C Best hit);ORF_evidence=NP_001150200.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);NIAS_FLcDNA=J013154C19,002-128-A01;TENOR=Os06t0714500-01
Chr06	irgsp1_rep	five_prime_UTR	30332480	30332644	.	+	.	Parent=Os06t0714500-01
Chr06	irgsp1_rep	CDS	30332645	30332842	.	+	0	Parent=Os06t0714500-01
Chr06	irgsp1_rep	CDS	30332931	30333231	.	+	0	Parent=Os06t0714500-01
Chr06	irgsp1_rep	CDS	30333322	30333480	.	+	2	Parent=Os06t0714500-01
Chr06	irgsp1_rep	CDS	30334817	30335112	.	+	2	Parent=Os06t0714500-01
Chr06	irgsp1_rep	CDS	30335435	30335662	.	+	0	Parent=Os06t0714500-01
Chr06	irgsp1_rep	three_prime_UTR	30335663	30336108	.	+	.	Parent=Os06t0714500-01
Chr06	irgsp1_rep	mRNA	30336056	30337006	.	-	.	ID=Os06t0714600-01;Name=Os06t0714600-01;Locus_id=Os06g0714600;RAP-DB Gene Symbol Synonym(s)=OsPRA2;Oryzabase Gene Symbol Synonym(s)=OsRab11F1%2C OsPRA2%2C PRA2%2C OsPra2;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab11F1;Note=Small G protein%2C Negative regulation of brassinosteroid signaling;Transcript_evidence=AK318603;ORF_evidence=Q5Z9Q7;GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),P-loop containing nucleoside triphosphate hydrolase (IPR027417),Small GTP-binding protein domain (IPR005225);NIAS_FLcDNA=J100071C15;Manual Curation=June 26%2C 2017;Literature_PMID=27375203;Oryzabase=11106;TENOR=Os06t0714600-01;KEGG=Os06t0714600-01;Subcellular location=plasma membrane (GO:0005886)
Chr06	irgsp1_rep	five_prime_UTR	30336937	30337006	.	-	.	Parent=Os06t0714600-01
Chr06	irgsp1_rep	CDS	30336259	30336936	.	-	0	Parent=Os06t0714600-01
Chr06	irgsp1_rep	three_prime_UTR	30336056	30336258	.	-	.	Parent=Os06t0714600-01
Chr06	irgsp1_rep	mRNA	30338563	30339245	.	-	.	ID=Os06t0714700-00;Name=Os06t0714700-00;Locus_id=Os06g0714700;Note=Conserved hypothetical protein.;Transcript_evidence=CU406678 (DDBJ%2C Best hit);ORF_evidence=NP_001058577.1 (RefSeq);TENOR=Os06t0714700-00;KEGG=Os06t0714700-00
Chr06	irgsp1_rep	five_prime_UTR	30339209	30339245	.	-	.	Parent=Os06t0714700-00
Chr06	irgsp1_rep	CDS	30338690	30339208	.	-	0	Parent=Os06t0714700-00
Chr06	irgsp1_rep	three_prime_UTR	30338563	30338689	.	-	.	Parent=Os06t0714700-00
Chr06	irgsp1_rep	mRNA	30340446	30341491	.	+	.	ID=Os06t0714800-01;Name=Os06t0714800-01;Locus_id=Os06g0714800;Note=Protein of unknown function DUF581 family protein.;Transcript_evidence=AK059793 (DDBJ%2C Best hit),AK071528 (DDBJ%2C Best hit);ORF_evidence=Q5Z9Q5 (UniProt);InterPro=Protein of unknown function DUF581 (IPR007650);NIAS_FLcDNA=006-204-E07,J023102E22;TENOR=Os06t0714800-01
Chr06	irgsp1_rep	five_prime_UTR	30340446	30340647	.	+	.	Parent=Os06t0714800-01
Chr06	irgsp1_rep	CDS	30340648	30340841	.	+	0	Parent=Os06t0714800-01
Chr06	irgsp1_rep	CDS	30340950	30341166	.	+	1	Parent=Os06t0714800-01
Chr06	irgsp1_rep	three_prime_UTR	30341167	30341491	.	+	.	Parent=Os06t0714800-01
Chr06	irgsp1_rep	mRNA	30346860	30350034	.	-	.	ID=Os06t0714900-01;Name=Os06t0714900-01;Locus_id=Os06g0714900;CGSNL Gene Symbol=RLCK218;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 218;Oryzabase Gene Symbol Synonym(s)=OsRLCK218;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 218;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK105337 (DDBJ%2C Best hit);ORF_evidence=NP_001147668.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-118-F01;Oryzabase=18914;TENOR=Os06t0714900-01
Chr06	irgsp1_rep	five_prime_UTR	30349556	30350034	.	-	.	Parent=Os06t0714900-01
Chr06	irgsp1_rep	CDS	30349214	30349555	.	-	0	Parent=Os06t0714900-01
Chr06	irgsp1_rep	CDS	30348139	30348402	.	-	0	Parent=Os06t0714900-01
Chr06	irgsp1_rep	CDS	30347514	30347636	.	-	0	Parent=Os06t0714900-01
Chr06	irgsp1_rep	CDS	30346999	30347415	.	-	0	Parent=Os06t0714900-01
Chr06	irgsp1_rep	three_prime_UTR	30346860	30346998	.	-	.	Parent=Os06t0714900-01
Chr06	irgsp1_rep	mRNA	30346864	30349960	.	-	.	ID=Os06t0714900-02;Name=Os06t0714900-02;Locus_id=Os06g0714900;CGSNL Gene Symbol=RLCK218;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 218;Oryzabase Gene Symbol Synonym(s)=OsRLCK218;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 218;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK071975 (DDBJ%2C Best hit);ORF_evidence=NP_001147668.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013087L17;Oryzabase=18914;TENOR=Os06t0714900-02
Chr06	irgsp1_rep	five_prime_UTR	30349556	30349960	.	-	.	Parent=Os06t0714900-02
Chr06	irgsp1_rep	CDS	30349214	30349555	.	-	0	Parent=Os06t0714900-02
Chr06	irgsp1_rep	CDS	30348139	30348402	.	-	0	Parent=Os06t0714900-02
Chr06	irgsp1_rep	CDS	30347514	30347636	.	-	0	Parent=Os06t0714900-02
Chr06	irgsp1_rep	CDS	30346999	30347415	.	-	0	Parent=Os06t0714900-02
Chr06	irgsp1_rep	three_prime_UTR	30346864	30346998	.	-	.	Parent=Os06t0714900-02
Chr06	irgsp1_rep	mRNA	30346998	30347422	.	+	.	ID=Os06t0714950-00;Name=Os06t0714950-00;Locus_id=Os06g0714950;Note=Hypothetical gene.;Transcript_evidence=EU943065 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0714950-00
Chr06	irgsp1_rep	five_prime_UTR	30346998	30346998	.	+	.	Parent=Os06t0714950-00
Chr06	irgsp1_rep	CDS	30346999	30347422	.	+	0	Parent=Os06t0714950-00
Chr06	irgsp1_rep	mRNA	30348735	30350422	.	+	.	ID=Os06t0714951-00;Name=Os06t0714951-00;Locus_id=Os06g0714951;Note=Hypothetical gene.;Transcript_evidence=CT832209 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os06t0714951-00;KEGG=Os06t0714951-00
Chr06	irgsp1_rep	five_prime_UTR	30348735	30349690	.	+	.	Parent=Os06t0714951-00
Chr06	irgsp1_rep	five_prime_UTR	30349836	30349928	.	+	.	Parent=Os06t0714951-00
Chr06	irgsp1_rep	CDS	30349929	30349968	.	+	0	Parent=Os06t0714951-00
Chr06	irgsp1_rep	CDS	30349975	30350204	.	+	2	Parent=Os06t0714951-00
Chr06	irgsp1_rep	three_prime_UTR	30350205	30350422	.	+	.	Parent=Os06t0714951-00
Chr06	irgsp1_rep	mRNA	30352994	30357038	.	+	.	ID=Os06t0715000-01;Name=Os06t0715000-01;Locus_id=Os06g0715000;Note=UV radiation resistance protein/autophagy-related protein 14 domain containing protein.;Transcript_evidence=AK107114 (DDBJ%2C Best hit);ORF_evidence=B8B2I0 (UniProt);GO=Biological Process: positive regulation of autophagy (GO:0010508);InterPro=UV radiation resistance protein/autophagy-related protein 14 (IPR018791);NIAS_FLcDNA=002-124-A09;Expression=AK107114;TENOR=Os06t0715000-01;KEGG=Os06t0715000-01
Chr06	irgsp1_rep	five_prime_UTR	30352994	30353174	.	+	.	Parent=Os06t0715000-01
Chr06	irgsp1_rep	CDS	30353175	30353435	.	+	0	Parent=Os06t0715000-01
Chr06	irgsp1_rep	CDS	30353813	30354019	.	+	0	Parent=Os06t0715000-01
Chr06	irgsp1_rep	CDS	30354407	30354593	.	+	0	Parent=Os06t0715000-01
Chr06	irgsp1_rep	CDS	30355357	30355517	.	+	2	Parent=Os06t0715000-01
Chr06	irgsp1_rep	CDS	30355795	30356025	.	+	0	Parent=Os06t0715000-01
Chr06	irgsp1_rep	CDS	30356682	30356798	.	+	0	Parent=Os06t0715000-01
Chr06	irgsp1_rep	three_prime_UTR	30356799	30357038	.	+	.	Parent=Os06t0715000-01
Chr06	irgsp1_rep	mRNA	30357701	30361198	.	-	.	ID=Os06t0715100-01;Name=Os06t0715100-01;Locus_id=Os06g0715100;CGSNL Gene Symbol=NPSN11;CGSNL Gene Name=NOVEL PLANT SNARE 11;Oryzabase Gene Symbol Synonym(s)=OsNPSN11%2C OryzaNPSN11;Oryzabase Gene Name Synonym(s)=SNARE 11;Note=Similar to Novel plant SNARE 11 (AtNPSN11).;Transcript_evidence=AK068956 (DDBJ%2C Best hit);ORF_evidence=B6TAD9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Target SNARE coiled-coil domain (IPR000727);NIAS_FLcDNA=J023002D18;Oryzabase=7302;Expression=AK068956;TENOR=Os06t0715100-01;KEGG=Os06t0715100-01
Chr06	irgsp1_rep	five_prime_UTR	30360904	30361198	.	-	.	Parent=Os06t0715100-01
Chr06	irgsp1_rep	CDS	30360830	30360903	.	-	0	Parent=Os06t0715100-01
Chr06	irgsp1_rep	CDS	30360449	30360541	.	-	1	Parent=Os06t0715100-01
Chr06	irgsp1_rep	CDS	30360069	30360162	.	-	1	Parent=Os06t0715100-01
Chr06	irgsp1_rep	CDS	30359935	30359972	.	-	0	Parent=Os06t0715100-01
Chr06	irgsp1_rep	CDS	30359669	30359757	.	-	1	Parent=Os06t0715100-01
Chr06	irgsp1_rep	CDS	30359438	30359517	.	-	2	Parent=Os06t0715100-01
Chr06	irgsp1_rep	CDS	30358990	30359046	.	-	0	Parent=Os06t0715100-01
Chr06	irgsp1_rep	CDS	30358815	30358899	.	-	0	Parent=Os06t0715100-01
Chr06	irgsp1_rep	CDS	30358708	30358718	.	-	2	Parent=Os06t0715100-01
Chr06	irgsp1_rep	three_prime_UTR	30358644	30358707	.	-	.	Parent=Os06t0715100-01
Chr06	irgsp1_rep	three_prime_UTR	30357701	30358077	.	-	.	Parent=Os06t0715100-01
Chr06	irgsp1_rep	mRNA	30357731	30361171	.	-	.	ID=Os06t0715100-02;Name=Os06t0715100-02;Locus_id=Os06g0715100;CGSNL Gene Symbol=NPSN11;CGSNL Gene Name=NOVEL PLANT SNARE 11;Oryzabase Gene Symbol Synonym(s)=OsNPSN11%2C OryzaNPSN11;Oryzabase Gene Name Synonym(s)=SNARE 11;Note=Similar to Novel plant SNARE 11.;Transcript_evidence=AK058743 (DDBJ%2C Best hit);ORF_evidence=B6TAD9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Target SNARE coiled-coil domain (IPR000727),Sec20 (IPR005606);NIAS_FLcDNA=001-019-G10;Oryzabase=7302;Expression=AK058743;TENOR=Os06t0715100-02;KEGG=Os06t0715100-02
Chr06	irgsp1_rep	five_prime_UTR	30360904	30361171	.	-	.	Parent=Os06t0715100-02
Chr06	irgsp1_rep	CDS	30360830	30360903	.	-	0	Parent=Os06t0715100-02
Chr06	irgsp1_rep	CDS	30360449	30360541	.	-	1	Parent=Os06t0715100-02
Chr06	irgsp1_rep	CDS	30360069	30360162	.	-	1	Parent=Os06t0715100-02
Chr06	irgsp1_rep	CDS	30359935	30359972	.	-	0	Parent=Os06t0715100-02
Chr06	irgsp1_rep	CDS	30359669	30359757	.	-	1	Parent=Os06t0715100-02
Chr06	irgsp1_rep	CDS	30359438	30359517	.	-	2	Parent=Os06t0715100-02
Chr06	irgsp1_rep	CDS	30358990	30359046	.	-	0	Parent=Os06t0715100-02
Chr06	irgsp1_rep	CDS	30358807	30358899	.	-	0	Parent=Os06t0715100-02
Chr06	irgsp1_rep	CDS	30358644	30358718	.	-	0	Parent=Os06t0715100-02
Chr06	irgsp1_rep	CDS	30357985	30358077	.	-	0	Parent=Os06t0715100-02
Chr06	irgsp1_rep	three_prime_UTR	30357731	30357984	.	-	.	Parent=Os06t0715100-02
Chr06	irgsp1_rep	mRNA	30362750	30363592	.	+	.	ID=Os06t0715200-01;Name=Os06t0715200-01;Locus_id=Os06g0715200;Note=Conserved hypothetical protein.;Transcript_evidence=AK066293 (DDBJ%2C Best hit);ORF_evidence=A2YGZ6 (UniProt);NIAS_FLcDNA=J013063D09;Expression=AK066293;TENOR=Os06t0715200-01;KEGG=Os06t0715200-01
Chr06	irgsp1_rep	five_prime_UTR	30362750	30362784	.	+	.	Parent=Os06t0715200-01
Chr06	irgsp1_rep	CDS	30362785	30363366	.	+	0	Parent=Os06t0715200-01
Chr06	irgsp1_rep	three_prime_UTR	30363367	30363592	.	+	.	Parent=Os06t0715200-01
Chr06	irgsp1_rep	mRNA	30364054	30366662	.	-	.	ID=Os06t0715300-01;Name=Os06t0715300-01;Locus_id=Os06g0715300;CGSNL Gene Symbol=GH9B6;CGSNL Gene Name=GLYCOSIDE HYDROLASE 9B6;Oryzabase Gene Symbol Synonym(s)=OsGH9B6;Oryzabase Gene Name Synonym(s)=glycoside hydrolase OsGH9B6%2C glycoside hydrolase 9B6;Note=Similar to CEL5%3DCELLULASE 5 (Fragment).;Transcript_evidence=AK121369 (DDBJ%2C Best hit);ORF_evidence=E7CQZ8 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 9 (IPR001701),Six-hairpin glycosidase-like (IPR008928),Six-hairpin glycosidase (IPR012341),Glycoside hydrolase%2C family 9%2C active site (IPR018221);NIAS_FLcDNA=J023125K15;Oryzabase=11706;Expression=AK121369;TENOR=Os06t0715300-01;KEGG=Os06t0715300-01
Chr06	irgsp1_rep	five_prime_UTR	30366357	30366662	.	-	.	Parent=Os06t0715300-01
Chr06	irgsp1_rep	CDS	30366161	30366356	.	-	0	Parent=Os06t0715300-01
Chr06	irgsp1_rep	CDS	30365797	30366080	.	-	2	Parent=Os06t0715300-01
Chr06	irgsp1_rep	CDS	30365281	30365715	.	-	0	Parent=Os06t0715300-01
Chr06	irgsp1_rep	CDS	30365021	30365165	.	-	0	Parent=Os06t0715300-01
Chr06	irgsp1_rep	CDS	30364733	30364899	.	-	2	Parent=Os06t0715300-01
Chr06	irgsp1_rep	CDS	30364257	30364586	.	-	0	Parent=Os06t0715300-01
Chr06	irgsp1_rep	three_prime_UTR	30364054	30364256	.	-	.	Parent=Os06t0715300-01
Chr06	irgsp1_rep	mRNA	30364299	30366064	.	+	.	ID=Os06t0715350-00;Name=Os06t0715350-00;Locus_id=Os06g0715350;Note=Hypothetical protein.;Transcript_evidence=tplb0042g22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0715350-00
Chr06	irgsp1_rep	five_prime_UTR	30364299	30364705	.	+	.	Parent=Os06t0715350-00
Chr06	irgsp1_rep	CDS	30364706	30364866	.	+	0	Parent=Os06t0715350-00
Chr06	irgsp1_rep	CDS	30365253	30365691	.	+	1	Parent=Os06t0715350-00
Chr06	irgsp1_rep	CDS	30365770	30366064	.	+	0	Parent=Os06t0715350-00
Chr06	irgsp1_rep	mRNA	30367351	30370711	.	+	.	ID=Os06t0715400-01;Name=Os06t0715400-01;Locus_id=Os06g0715400;Note=t-snare domain containing protein.;Transcript_evidence=AK071262 (DDBJ%2C Best hit),AK073963 (DDBJ%2C Best hit);ORF_evidence=A2YGZ8 (UniProt);NIAS_FLcDNA=J023085J06,J033073I09;TENOR=Os06t0715400-01
Chr06	irgsp1_rep	five_prime_UTR	30367351	30367513	.	+	.	Parent=Os06t0715400-01
Chr06	irgsp1_rep	five_prime_UTR	30367658	30367663	.	+	.	Parent=Os06t0715400-01
Chr06	irgsp1_rep	CDS	30367664	30368511	.	+	0	Parent=Os06t0715400-01
Chr06	irgsp1_rep	CDS	30369981	30370152	.	+	1	Parent=Os06t0715400-01
Chr06	irgsp1_rep	three_prime_UTR	30370153	30370711	.	+	.	Parent=Os06t0715400-01
Chr06	irgsp1_rep	mRNA	30371037	30374533	.	+	.	ID=Os06t0715500-01;Name=Os06t0715500-01;Locus_id=Os06g0715500;Note=Similar to Translocon-associated protein alpha subunit precursor (TRAP-alpha) (Signal sequence receptor alpha subunit) (SSR-alpha).;Transcript_evidence=AK100782 (DDBJ%2C Best hit);ORF_evidence=B6U444 (UniProt);GO=Cellular Component: endoplasmic reticulum (GO:0005783);InterPro=Translocon-associated protein (TRAP)%2C alpha subunit (IPR005595);NIAS_FLcDNA=J023120J15;Expression=AK100782;TENOR=Os06t0715500-01;KEGG=Os06t0715500-01
Chr06	irgsp1_rep	five_prime_UTR	30371037	30371156	.	+	.	Parent=Os06t0715500-01
Chr06	irgsp1_rep	CDS	30371157	30371229	.	+	0	Parent=Os06t0715500-01
Chr06	irgsp1_rep	CDS	30371920	30372081	.	+	2	Parent=Os06t0715500-01
Chr06	irgsp1_rep	CDS	30372367	30372417	.	+	2	Parent=Os06t0715500-01
Chr06	irgsp1_rep	CDS	30373090	30373178	.	+	2	Parent=Os06t0715500-01
Chr06	irgsp1_rep	CDS	30373533	30373610	.	+	0	Parent=Os06t0715500-01
Chr06	irgsp1_rep	CDS	30373712	30373915	.	+	0	Parent=Os06t0715500-01
Chr06	irgsp1_rep	CDS	30374002	30374073	.	+	0	Parent=Os06t0715500-01
Chr06	irgsp1_rep	CDS	30374163	30374207	.	+	0	Parent=Os06t0715500-01
Chr06	irgsp1_rep	three_prime_UTR	30374208	30374533	.	+	.	Parent=Os06t0715500-01
Chr06	irgsp1_rep	mRNA	30371059	30374407	.	+	.	ID=Os06t0715500-02;Name=Os06t0715500-02;Locus_id=Os06g0715500;Note=Similar to Translocon-associated protein alpha subunit precursor (TRAP-alpha) (Signal sequence receptor alpha subunit) (SSR-alpha).;Transcript_evidence=AK060137 (DDBJ%2C Best hit);ORF_evidence=B6U444 (UniProt);GO=Cellular Component: endoplasmic reticulum (GO:0005783);InterPro=Translocon-associated protein (TRAP)%2C alpha subunit (IPR005595);NIAS_FLcDNA=006-309-E05;Expression=AK060137;TENOR=Os06t0715500-02;KEGG=Os06t0715500-02
Chr06	irgsp1_rep	five_prime_UTR	30371059	30371156	.	+	.	Parent=Os06t0715500-02
Chr06	irgsp1_rep	CDS	30371157	30371229	.	+	0	Parent=Os06t0715500-02
Chr06	irgsp1_rep	CDS	30371920	30372081	.	+	2	Parent=Os06t0715500-02
Chr06	irgsp1_rep	CDS	30372367	30372417	.	+	2	Parent=Os06t0715500-02
Chr06	irgsp1_rep	CDS	30373090	30373178	.	+	2	Parent=Os06t0715500-02
Chr06	irgsp1_rep	CDS	30373533	30373610	.	+	0	Parent=Os06t0715500-02
Chr06	irgsp1_rep	CDS	30373712	30373915	.	+	0	Parent=Os06t0715500-02
Chr06	irgsp1_rep	CDS	30374002	30374073	.	+	0	Parent=Os06t0715500-02
Chr06	irgsp1_rep	CDS	30374163	30374207	.	+	0	Parent=Os06t0715500-02
Chr06	irgsp1_rep	three_prime_UTR	30374208	30374407	.	+	.	Parent=Os06t0715500-02
Chr06	irgsp1_rep	mRNA	30371093	30374533	.	+	.	ID=Os06t0715500-03;Name=Os06t0715500-03;Locus_id=Os06g0715500;Note=Similar to Translocon-associated protein alpha subunit precursor (TRAP-alpha) (Signal sequence receptor alpha subunit) (SSR-alpha).;Transcript_evidence=AK059749 (DDBJ%2C Best hit);ORF_evidence=B6U444 (UniProt);GO=Cellular Component: endoplasmic reticulum (GO:0005783);InterPro=Translocon-associated protein (TRAP)%2C alpha subunit (IPR005595);NIAS_FLcDNA=006-203-A09;Expression=AK059749;TENOR=Os06t0715500-03;KEGG=Os06t0715500-03
Chr06	irgsp1_rep	five_prime_UTR	30371093	30371156	.	+	.	Parent=Os06t0715500-03
Chr06	irgsp1_rep	CDS	30371157	30371229	.	+	0	Parent=Os06t0715500-03
Chr06	irgsp1_rep	CDS	30371920	30372081	.	+	2	Parent=Os06t0715500-03
Chr06	irgsp1_rep	CDS	30372367	30372417	.	+	2	Parent=Os06t0715500-03
Chr06	irgsp1_rep	CDS	30373090	30373178	.	+	2	Parent=Os06t0715500-03
Chr06	irgsp1_rep	CDS	30373533	30373610	.	+	0	Parent=Os06t0715500-03
Chr06	irgsp1_rep	CDS	30373712	30373915	.	+	0	Parent=Os06t0715500-03
Chr06	irgsp1_rep	CDS	30374002	30374073	.	+	0	Parent=Os06t0715500-03
Chr06	irgsp1_rep	CDS	30374163	30374207	.	+	0	Parent=Os06t0715500-03
Chr06	irgsp1_rep	three_prime_UTR	30374208	30374533	.	+	.	Parent=Os06t0715500-03
Chr06	irgsp1_rep	mRNA	30371126	30374329	.	-	.	ID=Os06t0715550-00;Name=Os06t0715550-00;Locus_id=Os06g0715550;Note=Non-protein coding transcript.;Transcript_evidence=BT016857 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0715550-00
Chr06	irgsp1_rep	exon	30374179	30374329	.	-	.	Parent=Os06t0715550-00
Chr06	irgsp1_rep	exon	30373998	30374086	.	-	.	Parent=Os06t0715550-00
Chr06	irgsp1_rep	exon	30373705	30373911	.	-	.	Parent=Os06t0715550-00
Chr06	irgsp1_rep	exon	30373530	30373603	.	-	.	Parent=Os06t0715550-00
Chr06	irgsp1_rep	exon	30373100	30373175	.	-	.	Parent=Os06t0715550-00
Chr06	irgsp1_rep	exon	30372367	30372427	.	-	.	Parent=Os06t0715550-00
Chr06	irgsp1_rep	exon	30371909	30372081	.	-	.	Parent=Os06t0715550-00
Chr06	irgsp1_rep	exon	30371126	30371219	.	-	.	Parent=Os06t0715550-00
Chr06	irgsp1_rep	mRNA	30376354	30381348	.	-	.	ID=Os06t0715600-01;Name=Os06t0715600-01;Locus_id=Os06g0715600;Note=Brain and reproductive organ-expressed family protein.;Transcript_evidence=AK102724 (DDBJ%2C Best hit);ORF_evidence=NP_001149020.1 (RefSeq);InterPro=Brain/reproductive organ-expressed protein (IPR010358);NIAS_FLcDNA=J033105L03;TENOR=Os06t0715600-01
Chr06	irgsp1_rep	five_prime_UTR	30381237	30381348	.	-	.	Parent=Os06t0715600-01
Chr06	irgsp1_rep	CDS	30381123	30381236	.	-	0	Parent=Os06t0715600-01
Chr06	irgsp1_rep	CDS	30380964	30381051	.	-	0	Parent=Os06t0715600-01
Chr06	irgsp1_rep	CDS	30380715	30380895	.	-	2	Parent=Os06t0715600-01
Chr06	irgsp1_rep	CDS	30380368	30380458	.	-	1	Parent=Os06t0715600-01
Chr06	irgsp1_rep	CDS	30380070	30380105	.	-	0	Parent=Os06t0715600-01
Chr06	irgsp1_rep	CDS	30379890	30379988	.	-	0	Parent=Os06t0715600-01
Chr06	irgsp1_rep	CDS	30378721	30378851	.	-	0	Parent=Os06t0715600-01
Chr06	irgsp1_rep	CDS	30378505	30378553	.	-	1	Parent=Os06t0715600-01
Chr06	irgsp1_rep	CDS	30377967	30378056	.	-	0	Parent=Os06t0715600-01
Chr06	irgsp1_rep	CDS	30377839	30377892	.	-	0	Parent=Os06t0715600-01
Chr06	irgsp1_rep	CDS	30377584	30377649	.	-	0	Parent=Os06t0715600-01
Chr06	irgsp1_rep	CDS	30377010	30377107	.	-	0	Parent=Os06t0715600-01
Chr06	irgsp1_rep	CDS	30376861	30376930	.	-	1	Parent=Os06t0715600-01
Chr06	irgsp1_rep	three_prime_UTR	30376853	30376860	.	-	.	Parent=Os06t0715600-01
Chr06	irgsp1_rep	three_prime_UTR	30376354	30376749	.	-	.	Parent=Os06t0715600-01
Chr06	irgsp1_rep	mRNA	30376361	30381303	.	-	.	ID=Os06t0715600-02;Name=Os06t0715600-02;Locus_id=Os06g0715600;Note=Brain and reproductive organ-expressed family protein.;Transcript_evidence=AK059304 (DDBJ%2C Best hit);ORF_evidence=NP_001149020.1 (RefSeq);InterPro=Brain/reproductive organ-expressed protein (IPR010358);NIAS_FLcDNA=001-025-F11;TENOR=Os06t0715600-02
Chr06	irgsp1_rep	five_prime_UTR	30381237	30381303	.	-	.	Parent=Os06t0715600-02
Chr06	irgsp1_rep	CDS	30381123	30381236	.	-	0	Parent=Os06t0715600-02
Chr06	irgsp1_rep	CDS	30380964	30381051	.	-	0	Parent=Os06t0715600-02
Chr06	irgsp1_rep	CDS	30380715	30380895	.	-	2	Parent=Os06t0715600-02
Chr06	irgsp1_rep	CDS	30380368	30380458	.	-	1	Parent=Os06t0715600-02
Chr06	irgsp1_rep	CDS	30380070	30380105	.	-	0	Parent=Os06t0715600-02
Chr06	irgsp1_rep	CDS	30379890	30379988	.	-	0	Parent=Os06t0715600-02
Chr06	irgsp1_rep	CDS	30378721	30378851	.	-	0	Parent=Os06t0715600-02
Chr06	irgsp1_rep	CDS	30378505	30378553	.	-	1	Parent=Os06t0715600-02
Chr06	irgsp1_rep	CDS	30377967	30378056	.	-	0	Parent=Os06t0715600-02
Chr06	irgsp1_rep	CDS	30377839	30377892	.	-	0	Parent=Os06t0715600-02
Chr06	irgsp1_rep	CDS	30377584	30377649	.	-	0	Parent=Os06t0715600-02
Chr06	irgsp1_rep	CDS	30377010	30377107	.	-	0	Parent=Os06t0715600-02
Chr06	irgsp1_rep	CDS	30376861	30376930	.	-	1	Parent=Os06t0715600-02
Chr06	irgsp1_rep	three_prime_UTR	30376853	30376860	.	-	.	Parent=Os06t0715600-02
Chr06	irgsp1_rep	three_prime_UTR	30376361	30376749	.	-	.	Parent=Os06t0715600-02
Chr06	irgsp1_rep	mRNA	30383070	30386691	.	+	.	ID=Os06t0715650-00;Name=Os06t0715650-00;Locus_id=Os06g0715650;Note=Non-protein coding transcript.;Transcript_evidence=tplb0026d01 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os06t0715650-00
Chr06	irgsp1_rep	exon	30383070	30383475	.	+	.	Parent=Os06t0715650-00
Chr06	irgsp1_rep	exon	30384352	30384477	.	+	.	Parent=Os06t0715650-00
Chr06	irgsp1_rep	exon	30384565	30384665	.	+	.	Parent=Os06t0715650-00
Chr06	irgsp1_rep	exon	30384890	30385034	.	+	.	Parent=Os06t0715650-00
Chr06	irgsp1_rep	exon	30385111	30385211	.	+	.	Parent=Os06t0715650-00
Chr06	irgsp1_rep	exon	30385310	30385481	.	+	.	Parent=Os06t0715650-00
Chr06	irgsp1_rep	exon	30385587	30385710	.	+	.	Parent=Os06t0715650-00
Chr06	irgsp1_rep	exon	30386534	30386691	.	+	.	Parent=Os06t0715650-00
Chr06	irgsp1_rep	mRNA	30383141	30386890	.	-	.	ID=Os06t0715700-01;Name=Os06t0715700-01;Locus_id=Os06g0715700;Note=Protein of unknown function DUF803 family protein.;Transcript_evidence=AK121440 (DDBJ%2C Best hit);ORF_evidence=B6TRR3 (UniProt);InterPro=Protein of unknown function DUF803 (IPR008521);NIAS_FLcDNA=J023140L10;Expression=AK121440;TENOR=Os06t0715700-01;KEGG=Os06t0715700-01
Chr06	irgsp1_rep	five_prime_UTR	30386679	30386890	.	-	.	Parent=Os06t0715700-01
Chr06	irgsp1_rep	CDS	30386555	30386678	.	-	0	Parent=Os06t0715700-01
Chr06	irgsp1_rep	CDS	30385759	30385815	.	-	2	Parent=Os06t0715700-01
Chr06	irgsp1_rep	CDS	30385584	30385674	.	-	2	Parent=Os06t0715700-01
Chr06	irgsp1_rep	CDS	30385318	30385478	.	-	1	Parent=Os06t0715700-01
Chr06	irgsp1_rep	CDS	30385094	30385221	.	-	2	Parent=Os06t0715700-01
Chr06	irgsp1_rep	CDS	30384881	30385018	.	-	0	Parent=Os06t0715700-01
Chr06	irgsp1_rep	CDS	30384566	30384658	.	-	0	Parent=Os06t0715700-01
Chr06	irgsp1_rep	CDS	30384361	30384478	.	-	0	Parent=Os06t0715700-01
Chr06	irgsp1_rep	CDS	30383359	30383483	.	-	2	Parent=Os06t0715700-01
Chr06	irgsp1_rep	three_prime_UTR	30383141	30383358	.	-	.	Parent=Os06t0715700-01
Chr06	irgsp1_rep	mRNA	30408686	30414524	.	+	.	ID=Os06t0716000-01;Name=Os06t0716000-01;Locus_id=Os06g0716000;CGSNL Gene Symbol=DUF668-10;CGSNL Gene Name=DUF668 FAMILY MEMBER 10;Oryzabase Gene Symbol Synonym(s)=OsDUF668-10;Oryzabase Gene Name Synonym(s)=DUF668 family member 10;Note=Protein of unknown function DUF668 family protein.;Transcript_evidence=AK067426 (DDBJ%2C Best hit);ORF_evidence=B9FQX1 (UniProt);InterPro=Protein of unknown function DUF668 (IPR007700),Protein of unknown function DUF3475 (IPR021864);NIAS_FLcDNA=J013107M14;Oryzabase=23486;Expression=AK067426;TENOR=Os06t0716000-01;KEGG=Os06t0716000-01
Chr06	irgsp1_rep	five_prime_UTR	30408686	30408893	.	+	.	Parent=Os06t0716000-01
Chr06	irgsp1_rep	CDS	30408894	30409055	.	+	0	Parent=Os06t0716000-01
Chr06	irgsp1_rep	CDS	30410720	30411033	.	+	0	Parent=Os06t0716000-01
Chr06	irgsp1_rep	CDS	30411128	30411220	.	+	1	Parent=Os06t0716000-01
Chr06	irgsp1_rep	CDS	30411325	30411415	.	+	1	Parent=Os06t0716000-01
Chr06	irgsp1_rep	CDS	30411692	30411785	.	+	0	Parent=Os06t0716000-01
Chr06	irgsp1_rep	CDS	30412062	30412156	.	+	2	Parent=Os06t0716000-01
Chr06	irgsp1_rep	CDS	30412333	30412402	.	+	0	Parent=Os06t0716000-01
Chr06	irgsp1_rep	CDS	30412483	30412592	.	+	2	Parent=Os06t0716000-01
Chr06	irgsp1_rep	CDS	30413046	30413162	.	+	0	Parent=Os06t0716000-01
Chr06	irgsp1_rep	CDS	30413467	30413543	.	+	0	Parent=Os06t0716000-01
Chr06	irgsp1_rep	CDS	30413639	30413683	.	+	1	Parent=Os06t0716000-01
Chr06	irgsp1_rep	CDS	30413808	30414333	.	+	1	Parent=Os06t0716000-01
Chr06	irgsp1_rep	three_prime_UTR	30414334	30414524	.	+	.	Parent=Os06t0716000-01
Chr06	irgsp1_rep	mRNA	30412482	30414511	.	+	.	ID=Os06t0716000-02;Name=Os06t0716000-02;Locus_id=Os06g0716000;CGSNL Gene Symbol=DUF668-10;CGSNL Gene Name=DUF668 FAMILY MEMBER 10;Oryzabase Gene Symbol Synonym(s)=OsDUF668-10;Oryzabase Gene Name Synonym(s)=DUF668 family member 10;Note=Hypothetical conserved gene.;Transcript_evidence=AK061844 (DDBJ%2C Best hit);ORF_evidence=B9FQX1 (UniProt);InterPro=Protein of unknown function DUF668 (IPR007700);NIAS_FLcDNA=001-040-E12;Oryzabase=23486;Expression=AK061844;TENOR=Os06t0716000-02;KEGG=Os06t0716000-02
Chr06	irgsp1_rep	CDS	30412482	30412592	.	+	0	Parent=Os06t0716000-02
Chr06	irgsp1_rep	CDS	30413046	30413162	.	+	0	Parent=Os06t0716000-02
Chr06	irgsp1_rep	CDS	30413467	30413543	.	+	0	Parent=Os06t0716000-02
Chr06	irgsp1_rep	CDS	30413639	30413683	.	+	1	Parent=Os06t0716000-02
Chr06	irgsp1_rep	CDS	30413808	30414333	.	+	1	Parent=Os06t0716000-02
Chr06	irgsp1_rep	three_prime_UTR	30414334	30414511	.	+	.	Parent=Os06t0716000-02
Chr06	irgsp1_rep	mRNA	30413757	30414333	.	-	.	ID=Os06t0716050-00;Name=Os06t0716050-00;Locus_id=Os06g0716050;Note=Hypothetical gene.;Transcript_evidence=EU948676 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0716050-00;KEGG=Os06t0716050-00
Chr06	irgsp1_rep	five_prime_UTR	30414326	30414333	.	-	.	Parent=Os06t0716050-00
Chr06	irgsp1_rep	CDS	30414110	30414325	.	-	0	Parent=Os06t0716050-00
Chr06	irgsp1_rep	three_prime_UTR	30413757	30414109	.	-	.	Parent=Os06t0716050-00
Chr06	irgsp1_rep	mRNA	30417661	30418845	.	+	.	ID=Os06t0716100-01;Name=Os06t0716100-01;Locus_id=Os06g0716100;Note=Similar to Chaperone protein dnaJ.;Transcript_evidence=AK071515 (DDBJ%2C Best hit),AK068387 (DDBJ%2C Best hit);ORF_evidence=NP_001147752.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=J023099H07,J013145J01;Expression=AK071515;TENOR=Os06t0716100-01;KEGG=Os06t0716100-01
Chr06	irgsp1_rep	five_prime_UTR	30417661	30417735	.	+	.	Parent=Os06t0716100-01
Chr06	irgsp1_rep	CDS	30417736	30418137	.	+	0	Parent=Os06t0716100-01
Chr06	irgsp1_rep	three_prime_UTR	30418138	30418845	.	+	.	Parent=Os06t0716100-01
Chr06	irgsp1_rep	mRNA	30420082	30422542	.	+	.	ID=Os06t0716200-01;Name=Os06t0716200-01;Locus_id=Os06g0716200;Note=Thaumatin%2C pathogenesis-related family protein.;Transcript_evidence=AK243584 (DDBJ%2C Best hit);ORF_evidence=B6TRQ1 (UniProt);InterPro=Thaumatin%2C pathogenesis-related (IPR001938),Thaumatin%2C conserved site (IPR017949);NIAS_FLcDNA=J100082O07;TENOR=Os06t0716200-01;KEGG=Os06t0716200-01
Chr06	irgsp1_rep	five_prime_UTR	30420082	30420083	.	+	.	Parent=Os06t0716200-01
Chr06	irgsp1_rep	CDS	30420084	30420132	.	+	0	Parent=Os06t0716200-01
Chr06	irgsp1_rep	CDS	30420334	30421078	.	+	2	Parent=Os06t0716200-01
Chr06	irgsp1_rep	CDS	30422200	30422356	.	+	1	Parent=Os06t0716200-01
Chr06	irgsp1_rep	three_prime_UTR	30422357	30422542	.	+	.	Parent=Os06t0716200-01
Chr06	irgsp1_rep	mRNA	30420333	30421077	.	-	.	ID=Os06t0716401-00;Name=Os06t0716401-00;Locus_id=Os06g0716401;Note=Hypothetical gene.;Transcript_evidence=EU967040 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0716401-00;KEGG=Os06t0716401-00
Chr06	irgsp1_rep	five_prime_UTR	30421077	30421077	.	-	.	Parent=Os06t0716401-00
Chr06	irgsp1_rep	CDS	30420333	30421076	.	-	0	Parent=Os06t0716401-00
Chr06	irgsp1_rep	mRNA	30422607	30437970	.	-	.	ID=Os06t0716467-00;Name=Os06t0716467-00;Locus_id=Os06g0716467;Oryzabase Gene Symbol Synonym(s)=Os_F0344;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0010l18 (Wheat FLcDNA);ORF_evidence=B8B2I6 (UniProt);Oryzabase=17450;TENOR=Os06t0716467-00
Chr06	irgsp1_rep	five_prime_UTR	30437857	30437970	.	-	.	Parent=Os06t0716467-00
Chr06	irgsp1_rep	five_prime_UTR	30435550	30435802	.	-	.	Parent=Os06t0716467-00
Chr06	irgsp1_rep	CDS	30434950	30435549	.	-	0	Parent=Os06t0716467-00
Chr06	irgsp1_rep	CDS	30423374	30423523	.	-	0	Parent=Os06t0716467-00
Chr06	irgsp1_rep	CDS	30422607	30422948	.	-	0	Parent=Os06t0716467-00
Chr06	irgsp1_rep	mRNA	30422656	30435803	.	+	.	ID=Os06t0716533-00;Name=Os06t0716533-00;Locus_id=Os06g0716533;Note=Non-protein coding transcript.;Transcript_evidence=tplb0032e04 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os06t0716533-00
Chr06	irgsp1_rep	exon	30422656	30422888	.	+	.	Parent=Os06t0716533-00
Chr06	irgsp1_rep	exon	30423335	30423571	.	+	.	Parent=Os06t0716533-00
Chr06	irgsp1_rep	exon	30434987	30435803	.	+	.	Parent=Os06t0716533-00
Chr06	irgsp1_rep	mRNA	30439245	30441564	.	+	.	ID=Os06t0716600-00;Name=Os06t0716600-00;Locus_id=Os06g0716600;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8SB40 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L5 (IPR002132),Ribosomal protein L5 domain (IPR022803);TENOR=Os06t0716600-00;KEGG=Os06t0716600-00
Chr06	irgsp1_rep	CDS	30439245	30439722	.	+	0	Parent=Os06t0716600-00
Chr06	irgsp1_rep	CDS	30440170	30440306	.	+	2	Parent=Os06t0716600-00
Chr06	irgsp1_rep	CDS	30440396	30441181	.	+	0	Parent=Os06t0716600-00
Chr06	irgsp1_rep	CDS	30441424	30441564	.	+	0	Parent=Os06t0716600-00
Chr06	irgsp1_rep	mRNA	30446479	30450437	.	-	.	ID=Os06t0716700-01;Name=Os06t0716700-01;Locus_id=Os06g0716700;CGSNL Gene Symbol=HSP90;CGSNL Gene Name=RICE 90KDA HEAT SHOCK PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsHsp90%2C rHSP90%2C OsHSP90%2C GRP94%2C OsGRP94;Oryzabase Gene Name Synonym(s)=rice 90kDa heat shock protein%2C heat shock protein90%2C heat shock protein 90%2C glucose-regulated protein 94%2C endoplasmin;Note=Similar to Heat shock protein 90.;Transcript_evidence=AK063385 (DDBJ%2C Best hit);ORF_evidence=Q9MB32 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: response to stress (GO:0006950),Molecular Function: ATP binding (GO:0005524),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein Hsp90 (IPR001404),ATPase-like%2C ATP-binding domain (IPR003594),Heat shock protein Hsp90%2C conserved site (IPR019805),Ribosomal protein S5 domain 2-type fold (IPR020568),Heat shock protein Hsp90%2C N-terminal (IPR020575);NIAS_FLcDNA=001-114-G08;Oryzabase=11519;TENOR=Os06t0716700-01
Chr06	irgsp1_rep	five_prime_UTR	30450362	30450437	.	-	.	Parent=Os06t0716700-01
Chr06	irgsp1_rep	CDS	30450292	30450361	.	-	0	Parent=Os06t0716700-01
Chr06	irgsp1_rep	CDS	30449470	30449590	.	-	2	Parent=Os06t0716700-01
Chr06	irgsp1_rep	CDS	30449231	30449384	.	-	1	Parent=Os06t0716700-01
Chr06	irgsp1_rep	CDS	30448605	30448685	.	-	0	Parent=Os06t0716700-01
Chr06	irgsp1_rep	CDS	30448402	30448513	.	-	0	Parent=Os06t0716700-01
Chr06	irgsp1_rep	CDS	30448128	30448254	.	-	2	Parent=Os06t0716700-01
Chr06	irgsp1_rep	CDS	30447875	30448013	.	-	1	Parent=Os06t0716700-01
Chr06	irgsp1_rep	CDS	30447313	30447439	.	-	0	Parent=Os06t0716700-01
Chr06	irgsp1_rep	CDS	30447043	30447224	.	-	2	Parent=Os06t0716700-01
Chr06	irgsp1_rep	CDS	30446727	30446942	.	-	0	Parent=Os06t0716700-01
Chr06	irgsp1_rep	CDS	30446479	30446644	.	-	0	Parent=Os06t0716700-01
Chr06	irgsp1_rep	mRNA	30444504	30450435	.	-	.	ID=Os06t0716700-02;Name=Os06t0716700-02;Locus_id=Os06g0716700;RAP-DB Gene Symbol Synonym(s)=GRP94%2C OsGrp94;RAP-DB Gene Name Synonym(s)=glucose-regulated protein 94;CGSNL Gene Symbol=HSP90;CGSNL Gene Name=RICE 90KDA HEAT SHOCK PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsHsp90%2C rHSP90%2C OsHSP90%2C GRP94%2C OsGRP94;Oryzabase Gene Name Synonym(s)=rice 90kDa heat shock protein%2C heat shock protein90%2C heat shock protein 90%2C glucose-regulated protein 94%2C endoplasmin;Note=Heat shock protein;Transcript_evidence=AK102478;ORF_evidence=Q5Z9N8;GO=Biological Process: protein folding (GO:0006457),Biological Process: response to stress (GO:0006950),Molecular Function: ATP binding (GO:0005524),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Histidine kinase/HSP90-like ATPase superfamily (IPR036890),Ribosomal protein S5 domain 2-type fold (IPR020568),HSP90%2C C-terminal domain (IPR037196),Heat shock protein Hsp90 family (IPR001404),Histidine kinase/HSP90-like ATPase (IPR003594),Heat shock protein Hsp90%2C N-terminal (IPR020575),Heat shock protein Hsp90%2C conserved site (IPR019805);NIAS_FLcDNA=J033094I10;Manual Curation=April 26%2C 2018;Literature_PMID=27538481;Oryzabase=11519;Expression=AK102478;TENOR=Os06t0716700-02;Subcellular location=endoplasmic reticulum (GO:0005783)
Chr06	irgsp1_rep	five_prime_UTR	30450362	30450435	.	-	.	Parent=Os06t0716700-02
Chr06	irgsp1_rep	CDS	30450292	30450361	.	-	0	Parent=Os06t0716700-02
Chr06	irgsp1_rep	CDS	30449470	30449590	.	-	2	Parent=Os06t0716700-02
Chr06	irgsp1_rep	CDS	30449231	30449384	.	-	1	Parent=Os06t0716700-02
Chr06	irgsp1_rep	CDS	30448605	30448685	.	-	0	Parent=Os06t0716700-02
Chr06	irgsp1_rep	CDS	30448402	30448513	.	-	0	Parent=Os06t0716700-02
Chr06	irgsp1_rep	CDS	30448128	30448254	.	-	2	Parent=Os06t0716700-02
Chr06	irgsp1_rep	CDS	30447875	30448013	.	-	1	Parent=Os06t0716700-02
Chr06	irgsp1_rep	CDS	30447313	30447439	.	-	0	Parent=Os06t0716700-02
Chr06	irgsp1_rep	CDS	30447043	30447224	.	-	2	Parent=Os06t0716700-02
Chr06	irgsp1_rep	CDS	30446727	30446942	.	-	0	Parent=Os06t0716700-02
Chr06	irgsp1_rep	CDS	30446479	30446644	.	-	0	Parent=Os06t0716700-02
Chr06	irgsp1_rep	CDS	30446264	30446402	.	-	2	Parent=Os06t0716700-02
Chr06	irgsp1_rep	CDS	30446031	30446181	.	-	1	Parent=Os06t0716700-02
Chr06	irgsp1_rep	CDS	30445048	30445452	.	-	0	Parent=Os06t0716700-02
Chr06	irgsp1_rep	CDS	30444693	30444941	.	-	0	Parent=Os06t0716700-02
Chr06	irgsp1_rep	three_prime_UTR	30444504	30444692	.	-	.	Parent=Os06t0716700-02
Chr06	irgsp1_rep	mRNA	30444508	30448194	.	-	.	ID=Os06t0716700-03;Name=Os06t0716700-03;Locus_id=Os06g0716700;CGSNL Gene Symbol=HSP90;CGSNL Gene Name=RICE 90KDA HEAT SHOCK PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsHsp90%2C rHSP90%2C OsHSP90%2C GRP94%2C OsGRP94;Oryzabase Gene Name Synonym(s)=rice 90kDa heat shock protein%2C heat shock protein90%2C heat shock protein 90%2C glucose-regulated protein 94%2C endoplasmin;Note=Similar to Heat shock protein 90.;Transcript_evidence=AK062023 (DDBJ%2C Best hit);ORF_evidence=Q9MB32 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: response to stress (GO:0006950),Molecular Function: ATP binding (GO:0005524),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein Hsp90 (IPR001404),ATPase-like%2C ATP-binding domain (IPR003594),Ribosomal protein S5 domain 2-type fold (IPR020568),Heat shock protein Hsp90%2C N-terminal (IPR020575);NIAS_FLcDNA=001-043-G02;Oryzabase=11519;Expression=AK062023;TENOR=Os06t0716700-03;KEGG=Os06t0716700-03
Chr06	irgsp1_rep	five_prime_UTR	30448193	30448194	.	-	.	Parent=Os06t0716700-03
Chr06	irgsp1_rep	CDS	30448128	30448192	.	-	0	Parent=Os06t0716700-03
Chr06	irgsp1_rep	CDS	30447875	30448013	.	-	1	Parent=Os06t0716700-03
Chr06	irgsp1_rep	CDS	30447313	30447439	.	-	0	Parent=Os06t0716700-03
Chr06	irgsp1_rep	CDS	30447043	30447224	.	-	2	Parent=Os06t0716700-03
Chr06	irgsp1_rep	CDS	30446727	30446942	.	-	0	Parent=Os06t0716700-03
Chr06	irgsp1_rep	CDS	30446479	30446644	.	-	0	Parent=Os06t0716700-03
Chr06	irgsp1_rep	CDS	30446264	30446402	.	-	2	Parent=Os06t0716700-03
Chr06	irgsp1_rep	CDS	30446031	30446181	.	-	1	Parent=Os06t0716700-03
Chr06	irgsp1_rep	CDS	30445048	30445452	.	-	0	Parent=Os06t0716700-03
Chr06	irgsp1_rep	CDS	30444693	30444941	.	-	0	Parent=Os06t0716700-03
Chr06	irgsp1_rep	three_prime_UTR	30444508	30444692	.	-	.	Parent=Os06t0716700-03
Chr06	irgsp1_rep	mRNA	30444683	30445273	.	+	.	ID=Os06t0716750-00;Name=Os06t0716750-00;Locus_id=Os06g0716750;Note=Hypothetical gene.;Transcript_evidence=BT016887 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0716750-00;KEGG=Os06t0716750-00
Chr06	irgsp1_rep	five_prime_UTR	30444683	30444843	.	+	.	Parent=Os06t0716750-00
Chr06	irgsp1_rep	CDS	30444844	30444941	.	+	0	Parent=Os06t0716750-00
Chr06	irgsp1_rep	CDS	30445048	30445273	.	+	1	Parent=Os06t0716750-00
Chr06	irgsp1_rep	mRNA	30452461	30456214	.	-	.	ID=Os06t0716800-01;Name=Os06t0716800-01;Locus_id=Os06g0716800;CGSNL Gene Symbol=BZIP53;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 53;Oryzabase Gene Symbol Synonym(s)=OsbZIP53%2C APIP5;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 53%2C AvrPiz-t Interacting Protein 5;Note=Basic leucine zipper domain containing protein.;Transcript_evidence=AK071639 (DDBJ%2C Best hit);ORF_evidence=B6T7L6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),Basic leucine zipper (IPR011700);NIAS_FLcDNA=J023099K10;Oryzabase=10136;TENOR=Os06t0716800-01
Chr06	irgsp1_rep	five_prime_UTR	30455941	30456214	.	-	.	Parent=Os06t0716800-01
Chr06	irgsp1_rep	five_prime_UTR	30455721	30455751	.	-	.	Parent=Os06t0716800-01
Chr06	irgsp1_rep	CDS	30454902	30455720	.	-	0	Parent=Os06t0716800-01
Chr06	irgsp1_rep	three_prime_UTR	30454900	30454901	.	-	.	Parent=Os06t0716800-01
Chr06	irgsp1_rep	three_prime_UTR	30452461	30452854	.	-	.	Parent=Os06t0716800-01
Chr06	irgsp1_rep	mRNA	30452481	30456149	.	-	.	ID=Os06t0716800-02;Name=Os06t0716800-02;Locus_id=Os06g0716800;CGSNL Gene Symbol=BZIP53;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 53;Oryzabase Gene Symbol Synonym(s)=OsbZIP53%2C APIP5;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 53%2C AvrPiz-t Interacting Protein 5;Note=Basic leucine zipper domain containing protein.;Transcript_evidence=AK103968 (DDBJ%2C Best hit);ORF_evidence=B6T7L6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),Basic leucine zipper (IPR011700);NIAS_FLcDNA=001-016-A09;Oryzabase=10136;TENOR=Os06t0716800-02
Chr06	irgsp1_rep	five_prime_UTR	30455941	30456149	.	-	.	Parent=Os06t0716800-02
Chr06	irgsp1_rep	five_prime_UTR	30455721	30455751	.	-	.	Parent=Os06t0716800-02
Chr06	irgsp1_rep	CDS	30454902	30455720	.	-	0	Parent=Os06t0716800-02
Chr06	irgsp1_rep	three_prime_UTR	30454900	30454901	.	-	.	Parent=Os06t0716800-02
Chr06	irgsp1_rep	three_prime_UTR	30452481	30452854	.	-	.	Parent=Os06t0716800-02
Chr06	irgsp1_rep	mRNA	30465020	30468087	.	-	.	ID=Os06t0717100-01;Name=Os06t0717100-01;Locus_id=Os06g0717100;Note=Senescence-associated family protein.;Transcript_evidence=AK071437 (DDBJ%2C Best hit);ORF_evidence=B5TV63 (UniProt);InterPro=Senescence/spartin-associated (IPR009686);NIAS_FLcDNA=J023095M01;Expression=AK071437;TENOR=Os06t0717100-01;KEGG=Os06t0717100-01
Chr06	irgsp1_rep	five_prime_UTR	30467951	30468087	.	-	.	Parent=Os06t0717100-01
Chr06	irgsp1_rep	CDS	30467133	30467950	.	-	0	Parent=Os06t0717100-01
Chr06	irgsp1_rep	CDS	30466526	30466692	.	-	1	Parent=Os06t0717100-01
Chr06	irgsp1_rep	CDS	30465654	30465738	.	-	2	Parent=Os06t0717100-01
Chr06	irgsp1_rep	CDS	30465268	30465457	.	-	1	Parent=Os06t0717100-01
Chr06	irgsp1_rep	three_prime_UTR	30465020	30465267	.	-	.	Parent=Os06t0717100-01
Chr06	irgsp1_rep	mRNA	30470105	30474472	.	-	.	ID=Os06t0717200-01;Name=Os06t0717200-01;Locus_id=Os06g0717200;CGSNL Gene Symbol=FON1;CGSNL Gene Name=FLORAL ORGAN NUMBER 1;Oryzabase Gene Symbol Synonym(s)=OsFON1%2C fon1%2C OsRLCK219%2C RLCK219;Oryzabase Gene Name Synonym(s)=floral organ number1%2C floral organ number 1%2C floral organ number-1%2C CLV1 orthologue%2C Receptor-like Cytoplasmic Kinase 219;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK111824 (DDBJ%2C Best hit);ORF_evidence=Q8SB35 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023050A06;Oryzabase=111;Expression=AK111824;TENOR=Os06t0717200-01;KEGG=Os06t0717200-01
Chr06	irgsp1_rep	five_prime_UTR	30474460	30474472	.	-	.	Parent=Os06t0717200-01
Chr06	irgsp1_rep	CDS	30471840	30474459	.	-	0	Parent=Os06t0717200-01
Chr06	irgsp1_rep	CDS	30470275	30470639	.	-	2	Parent=Os06t0717200-01
Chr06	irgsp1_rep	three_prime_UTR	30470105	30470274	.	-	.	Parent=Os06t0717200-01
Chr06	irgsp1_rep	mRNA	30479289	30480541	.	+	.	ID=Os06t0717300-00;Name=Os06t0717300-00;Locus_id=Os06g0717300;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001174997.1 (RefSeq);TENOR=Os06t0717300-00;KEGG=Os06t0717300-00
Chr06	irgsp1_rep	CDS	30479289	30479318	.	+	0	Parent=Os06t0717300-00
Chr06	irgsp1_rep	CDS	30480254	30480541	.	+	0	Parent=Os06t0717300-00
Chr06	irgsp1_rep	mRNA	30480738	30485250	.	-	.	ID=Os06t0717400-01;Name=Os06t0717400-01;Locus_id=Os06g0717400;Note=Pseudouridine synthase domain containing protein.;Transcript_evidence=AK072887 (DDBJ%2C Best hit);ORF_evidence=B6TXP4 (UniProt);GO=Biological Process: pseudouridine synthesis (GO:0001522),Biological Process: RNA modification (GO:0009451),Molecular Function: RNA binding (GO:0003723),Molecular Function: pseudouridine synthase activity (GO:0009982);InterPro=RNA-binding S4 (IPR002942),Pseudouridine synthase%2C RsuA and RluB/C/D/E/F (IPR006145),Pseudouridine synthase%2C RluC/RluD%2C conserved site (IPR006224),Pseudouridine synthase%2C catalytic domain (IPR020103);NIAS_FLcDNA=J023148F05;Expression=AK072887;TENOR=Os06t0717400-01;KEGG=Os06t0717400-01 (EC:5.4.99.12)
Chr06	irgsp1_rep	five_prime_UTR	30485231	30485250	.	-	.	Parent=Os06t0717400-01
Chr06	irgsp1_rep	CDS	30484901	30485230	.	-	0	Parent=Os06t0717400-01
Chr06	irgsp1_rep	CDS	30483999	30484142	.	-	0	Parent=Os06t0717400-01
Chr06	irgsp1_rep	CDS	30483051	30483314	.	-	0	Parent=Os06t0717400-01
Chr06	irgsp1_rep	CDS	30482692	30482891	.	-	0	Parent=Os06t0717400-01
Chr06	irgsp1_rep	CDS	30482052	30482130	.	-	1	Parent=Os06t0717400-01
Chr06	irgsp1_rep	CDS	30481595	30481770	.	-	0	Parent=Os06t0717400-01
Chr06	irgsp1_rep	CDS	30481378	30481522	.	-	1	Parent=Os06t0717400-01
Chr06	irgsp1_rep	three_prime_UTR	30480738	30481377	.	-	.	Parent=Os06t0717400-01
Chr06	irgsp1_rep	mRNA	30492969	30496144	.	+	.	ID=Os06t0717600-01;Name=Os06t0717600-01;Locus_id=Os06g0717600;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK067113 (DDBJ%2C Best hit);ORF_evidence=NP_001151289.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J013096G12;Expression=AK067113;TENOR=Os06t0717600-01;KEGG=Os06t0717600-01 (EC:6.3.2.19)
Chr06	irgsp1_rep	five_prime_UTR	30492969	30493209	.	+	.	Parent=Os06t0717600-01
Chr06	irgsp1_rep	CDS	30493210	30493351	.	+	0	Parent=Os06t0717600-01
Chr06	irgsp1_rep	CDS	30494274	30494452	.	+	2	Parent=Os06t0717600-01
Chr06	irgsp1_rep	CDS	30495040	30495123	.	+	0	Parent=Os06t0717600-01
Chr06	irgsp1_rep	CDS	30495239	30495409	.	+	0	Parent=Os06t0717600-01
Chr06	irgsp1_rep	CDS	30495647	30495769	.	+	0	Parent=Os06t0717600-01
Chr06	irgsp1_rep	three_prime_UTR	30495770	30496144	.	+	.	Parent=Os06t0717600-01
Chr06	irgsp1_rep	mRNA	30493074	30496136	.	+	.	ID=Os06t0717600-02;Name=Os06t0717600-02;Locus_id=Os06g0717600;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK061850 (DDBJ%2C Best hit);ORF_evidence=NP_001151289.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=001-040-F07;Expression=AK061850;TENOR=Os06t0717600-02;KEGG=Os06t0717600-02 (EC:6.3.2.19)
Chr06	irgsp1_rep	five_prime_UTR	30493074	30493209	.	+	.	Parent=Os06t0717600-02
Chr06	irgsp1_rep	CDS	30493210	30493351	.	+	0	Parent=Os06t0717600-02
Chr06	irgsp1_rep	CDS	30494274	30494452	.	+	2	Parent=Os06t0717600-02
Chr06	irgsp1_rep	CDS	30495040	30495123	.	+	0	Parent=Os06t0717600-02
Chr06	irgsp1_rep	CDS	30495239	30495409	.	+	0	Parent=Os06t0717600-02
Chr06	irgsp1_rep	CDS	30495647	30495769	.	+	0	Parent=Os06t0717600-02
Chr06	irgsp1_rep	three_prime_UTR	30495770	30496136	.	+	.	Parent=Os06t0717600-02
Chr06	irgsp1_rep	mRNA	30494185	30496354	.	-	.	ID=Os06t0717700-01;Name=Os06t0717700-01;Locus_id=Os06g0717700;Note=Conserved hypothetical protein.;Transcript_evidence=AK111417 (DDBJ%2C Best hit);ORF_evidence=C0PLE0 (UniProt);NIAS_FLcDNA=002-182-G04;Expression=AK111417;TENOR=Os06t0717700-01;KEGG=Os06t0717700-01
Chr06	irgsp1_rep	five_prime_UTR	30495907	30496354	.	-	.	Parent=Os06t0717700-01
Chr06	irgsp1_rep	CDS	30495559	30495906	.	-	0	Parent=Os06t0717700-01
Chr06	irgsp1_rep	three_prime_UTR	30494185	30495558	.	-	.	Parent=Os06t0717700-01
Chr06	irgsp1_rep	mRNA	30496480	30501195	.	-	.	ID=Os06t0717800-01;Name=Os06t0717800-01;Locus_id=Os06g0717800;Oryzabase Gene Symbol Synonym(s)=OsPP2C60%2C PP2C60%2C OsPP92;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C60%2C protein phosphatase 2C 60%2C protein phosphatase 92;Note=Similar to Protein phosphatase 2C-like protein.;Transcript_evidence=AK121514 (DDBJ%2C Best hit);ORF_evidence=B6SYG9 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J033025D16;Oryzabase=17933;Expression=AK121514;TENOR=Os06t0717800-01;KEGG=Os06t0717800-01 (EC:3.1.3.43)
Chr06	irgsp1_rep	five_prime_UTR	30500996	30501195	.	-	.	Parent=Os06t0717800-01
Chr06	irgsp1_rep	five_prime_UTR	30500777	30500896	.	-	.	Parent=Os06t0717800-01
Chr06	irgsp1_rep	five_prime_UTR	30499668	30499768	.	-	.	Parent=Os06t0717800-01
Chr06	irgsp1_rep	CDS	30499349	30499667	.	-	0	Parent=Os06t0717800-01
Chr06	irgsp1_rep	CDS	30498876	30499243	.	-	2	Parent=Os06t0717800-01
Chr06	irgsp1_rep	CDS	30497973	30498209	.	-	0	Parent=Os06t0717800-01
Chr06	irgsp1_rep	CDS	30497054	30497308	.	-	0	Parent=Os06t0717800-01
Chr06	irgsp1_rep	three_prime_UTR	30496480	30497053	.	-	.	Parent=Os06t0717800-01
Chr06	irgsp1_rep	mRNA	30496707	30500912	.	-	.	ID=Os06t0717800-02;Name=Os06t0717800-02;Locus_id=Os06g0717800;Oryzabase Gene Symbol Synonym(s)=OsPP2C60%2C PP2C60%2C OsPP92;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C60%2C protein phosphatase 2C 60%2C protein phosphatase 92;Note=Similar to Protein phosphatase 2C-like protein.;Transcript_evidence=AK064885 (DDBJ%2C Best hit);ORF_evidence=B6SYG9 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J013000K09;Oryzabase=17933;Expression=AK064885;TENOR=Os06t0717800-02;KEGG=Os06t0717800-02 (EC:3.1.3.43)
Chr06	irgsp1_rep	five_prime_UTR	30500777	30500912	.	-	.	Parent=Os06t0717800-02
Chr06	irgsp1_rep	five_prime_UTR	30499668	30499768	.	-	.	Parent=Os06t0717800-02
Chr06	irgsp1_rep	CDS	30499349	30499667	.	-	0	Parent=Os06t0717800-02
Chr06	irgsp1_rep	CDS	30498876	30499243	.	-	2	Parent=Os06t0717800-02
Chr06	irgsp1_rep	CDS	30497973	30498209	.	-	0	Parent=Os06t0717800-02
Chr06	irgsp1_rep	CDS	30497054	30497308	.	-	0	Parent=Os06t0717800-02
Chr06	irgsp1_rep	three_prime_UTR	30496707	30497053	.	-	.	Parent=Os06t0717800-02
Chr06	irgsp1_rep	mRNA	30496596	30499527	.	-	.	ID=Os06t0717800-03;Name=Os06t0717800-03;Locus_id=Os06g0717800;Oryzabase Gene Symbol Synonym(s)=OsPP2C60%2C PP2C60%2C OsPP92;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C60%2C protein phosphatase 2C 60%2C protein phosphatase 92;Note=Similar to Protein phosphatase 2C.;Transcript_evidence=AK062157 (DDBJ%2C Best hit);ORF_evidence=B6SYG9 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=001-046-A04;Oryzabase=17933;Expression=AK062157;TENOR=Os06t0717800-03;KEGG=Os06t0717800-03 (EC:3.1.3.43)
Chr06	irgsp1_rep	five_prime_UTR	30499527	30499527	.	-	.	Parent=Os06t0717800-03
Chr06	irgsp1_rep	CDS	30499349	30499526	.	-	0	Parent=Os06t0717800-03
Chr06	irgsp1_rep	CDS	30498876	30499243	.	-	2	Parent=Os06t0717800-03
Chr06	irgsp1_rep	CDS	30497973	30498209	.	-	0	Parent=Os06t0717800-03
Chr06	irgsp1_rep	CDS	30497054	30497308	.	-	0	Parent=Os06t0717800-03
Chr06	irgsp1_rep	three_prime_UTR	30496596	30497053	.	-	.	Parent=Os06t0717800-03
Chr06	irgsp1_rep	mRNA	30497073	30497341	.	+	.	ID=Os06t0717850-00;Name=Os06t0717850-00;Locus_id=Os06g0717850;Note=Non-protein coding transcript.;Transcript_evidence=EU943254 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0717850-00
Chr06	irgsp1_rep	exon	30497073	30497341	.	+	.	Parent=Os06t0717850-00
Chr06	irgsp1_rep	mRNA	30509418	30512316	.	+	.	ID=Os06t0717900-01;Name=Os06t0717900-01;Locus_id=Os06g0717900;Note=Peptidase A1 domain containing protein.;Transcript_evidence=AK069070 (DDBJ%2C Best hit);ORF_evidence=NP_001147826.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J023007C05;Expression=AK069070;TENOR=Os06t0717900-01;KEGG=Os06t0717900-01
Chr06	irgsp1_rep	five_prime_UTR	30509418	30509466	.	+	.	Parent=Os06t0717900-01
Chr06	irgsp1_rep	CDS	30509467	30509489	.	+	0	Parent=Os06t0717900-01
Chr06	irgsp1_rep	CDS	30510308	30510484	.	+	1	Parent=Os06t0717900-01
Chr06	irgsp1_rep	CDS	30510566	30510701	.	+	1	Parent=Os06t0717900-01
Chr06	irgsp1_rep	CDS	30511009	30511097	.	+	0	Parent=Os06t0717900-01
Chr06	irgsp1_rep	CDS	30511200	30511314	.	+	1	Parent=Os06t0717900-01
Chr06	irgsp1_rep	CDS	30511466	30511529	.	+	0	Parent=Os06t0717900-01
Chr06	irgsp1_rep	CDS	30511612	30511683	.	+	2	Parent=Os06t0717900-01
Chr06	irgsp1_rep	CDS	30511807	30512054	.	+	2	Parent=Os06t0717900-01
Chr06	irgsp1_rep	three_prime_UTR	30512055	30512316	.	+	.	Parent=Os06t0717900-01
Chr06	irgsp1_rep	mRNA	30509418	30512236	.	+	.	ID=Os06t0717900-02;Name=Os06t0717900-02;Locus_id=Os06g0717900;Note=Similar to aspartic-type endopeptidase/ pepsin A.;Transcript_evidence=AK121147 (DDBJ%2C Best hit);ORF_evidence=NP_001147826.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J023078D21;Expression=AK121147;TENOR=Os06t0717900-02;KEGG=Os06t0717900-02
Chr06	irgsp1_rep	five_prime_UTR	30509418	30509466	.	+	.	Parent=Os06t0717900-02
Chr06	irgsp1_rep	CDS	30509467	30509774	.	+	0	Parent=Os06t0717900-02
Chr06	irgsp1_rep	CDS	30509861	30510484	.	+	1	Parent=Os06t0717900-02
Chr06	irgsp1_rep	CDS	30510566	30510701	.	+	1	Parent=Os06t0717900-02
Chr06	irgsp1_rep	CDS	30511009	30511097	.	+	0	Parent=Os06t0717900-02
Chr06	irgsp1_rep	CDS	30511200	30511314	.	+	1	Parent=Os06t0717900-02
Chr06	irgsp1_rep	CDS	30511466	30511529	.	+	0	Parent=Os06t0717900-02
Chr06	irgsp1_rep	CDS	30511612	30511683	.	+	2	Parent=Os06t0717900-02
Chr06	irgsp1_rep	CDS	30511807	30512054	.	+	2	Parent=Os06t0717900-02
Chr06	irgsp1_rep	three_prime_UTR	30512055	30512236	.	+	.	Parent=Os06t0717900-02
Chr06	irgsp1_rep	mRNA	30509421	30512230	.	-	.	ID=Os06t0718000-00;Name=Os06t0718000-00;Locus_id=Os06g0718000;Note=Hypothetical protein.;Transcript_evidence=tplb0042c03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0718000-00
Chr06	irgsp1_rep	five_prime_UTR	30512137	30512230	.	-	.	Parent=Os06t0718000-00
Chr06	irgsp1_rep	CDS	30511812	30512136	.	-	0	Parent=Os06t0718000-00
Chr06	irgsp1_rep	CDS	30511612	30511681	.	-	2	Parent=Os06t0718000-00
Chr06	irgsp1_rep	CDS	30511454	30511529	.	-	1	Parent=Os06t0718000-00
Chr06	irgsp1_rep	CDS	30511212	30511294	.	-	0	Parent=Os06t0718000-00
Chr06	irgsp1_rep	CDS	30511043	30511088	.	-	1	Parent=Os06t0718000-00
Chr06	irgsp1_rep	three_prime_UTR	30511015	30511042	.	-	.	Parent=Os06t0718000-00
Chr06	irgsp1_rep	three_prime_UTR	30510590	30510709	.	-	.	Parent=Os06t0718000-00
Chr06	irgsp1_rep	three_prime_UTR	30509871	30510503	.	-	.	Parent=Os06t0718000-00
Chr06	irgsp1_rep	three_prime_UTR	30509421	30509784	.	-	.	Parent=Os06t0718000-00
Chr06	irgsp1_rep	mRNA	30520195	30521345	.	+	.	ID=Os06t0718100-01;Name=Os06t0718100-01;Locus_id=Os06g0718100;CGSNL Gene Symbol=EXPA29;CGSNL Gene Name=ALPHA-EXPANSIN 29;Oryzabase Gene Symbol Synonym(s)=OsEXPA29;Note=Similar to Alpha-expansin precursor.;Transcript_evidence=AK070133 (DDBJ%2C Best hit);ORF_evidence=Q4PR39 (UniProt);GO=Biological Process: plant-type cell wall organization (GO:0009664),Cellular Component: extracellular region (GO:0005576);InterPro=Expansin (IPR002963),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);NIAS_FLcDNA=J023046O16;Oryzabase=9396;Expression=AK070133;TENOR=Os06t0718100-01;KEGG=Os06t0718100-01
Chr06	irgsp1_rep	five_prime_UTR	30520195	30520264	.	+	.	Parent=Os06t0718100-01
Chr06	irgsp1_rep	CDS	30520265	30520418	.	+	0	Parent=Os06t0718100-01
Chr06	irgsp1_rep	CDS	30520504	30521141	.	+	2	Parent=Os06t0718100-01
Chr06	irgsp1_rep	three_prime_UTR	30521142	30521345	.	+	.	Parent=Os06t0718100-01
Chr06	irgsp1_rep	mRNA	30521743	30524025	.	-	.	ID=Os06t0718300-00;Name=Os06t0718300-00;Locus_id=Os06g0718300;Note=Putative UPF0496 protein 2.;Transcript_evidence=AK365670 (DDBJ);ORF_evidence=Q5YLY9 (UniProt);InterPro=Protein of unknown function DUF677 (IPR007749);TENOR=Os06t0718300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	30523977	30524025	.	-	.	Parent=Os06t0718300-00
Chr06	irgsp1_rep	five_prime_UTR	30523035	30523040	.	-	.	Parent=Os06t0718300-00
Chr06	irgsp1_rep	CDS	30521808	30523034	.	-	0	Parent=Os06t0718300-00
Chr06	irgsp1_rep	three_prime_UTR	30521743	30521807	.	-	.	Parent=Os06t0718300-00
Chr06	irgsp1_rep	mRNA	30528045	30529070	.	+	.	ID=Os06t0718400-00;Name=Os06t0718400-00;Locus_id=Os06g0718400;CGSNL Gene Symbol=UCL18;CGSNL Gene Name=UCLACYANIN-LIKE PROTEIN 18;Oryzabase Gene Symbol Synonym(s)=OsUCL18;Oryzabase Gene Name Synonym(s)=uclacyanin-like protein 18;Note=Hypothetical conserved gene.;Transcript_evidence=CT836320 (DDBJ%2C Best hit);ORF_evidence=Q8SB26 (UniProt);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Blue (type 1) copper domain (IPR000923),Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);Oryzabase=9767;TENOR=Os06t0718400-00;KEGG=Os06t0718400-00
Chr06	irgsp1_rep	five_prime_UTR	30528045	30528095	.	+	.	Parent=Os06t0718400-00
Chr06	irgsp1_rep	CDS	30528096	30528261	.	+	0	Parent=Os06t0718400-00
Chr06	irgsp1_rep	CDS	30528349	30528731	.	+	2	Parent=Os06t0718400-00
Chr06	irgsp1_rep	three_prime_UTR	30528732	30529070	.	+	.	Parent=Os06t0718400-00
Chr06	irgsp1_rep	mRNA	30563598	30567200	.	+	.	ID=Os06t0719500-00;Name=Os06t0719500-00;Locus_id=Os06g0719500;CGSNL Gene Symbol=BZIP54;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 54;Oryzabase Gene Symbol Synonym(s)=OsbZIP54%2C OsFD6;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 54%2C FD Transcription Factor 6;Note=Hypothetical conserved gene.;Transcript_evidence=CT834745 (DDBJ%2C Best hit);ORF_evidence=Q5Z4H6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);Oryzabase=10137;TENOR=Os06t0719500-00;KEGG=Os06t0719500-00
Chr06	irgsp1_rep	five_prime_UTR	30563598	30563935	.	+	.	Parent=Os06t0719500-00
Chr06	irgsp1_rep	CDS	30563936	30564481	.	+	0	Parent=Os06t0719500-00
Chr06	irgsp1_rep	CDS	30566497	30566574	.	+	0	Parent=Os06t0719500-00
Chr06	irgsp1_rep	CDS	30566832	30566906	.	+	0	Parent=Os06t0719500-00
Chr06	irgsp1_rep	three_prime_UTR	30566907	30567200	.	+	.	Parent=Os06t0719500-00
Chr06	irgsp1_rep	mRNA	30568538	30571091	.	-	.	ID=Os06t0719600-01;Name=Os06t0719600-01;Locus_id=Os06g0719600;Note=Domain of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK099272 (DDBJ%2C Best hit);ORF_evidence=Q8SB18 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=J023022L10;Expression=AK099272;TENOR=Os06t0719600-01;KEGG=Os06t0719600-01
Chr06	irgsp1_rep	five_prime_UTR	30571042	30571091	.	-	.	Parent=Os06t0719600-01
Chr06	irgsp1_rep	CDS	30569622	30571041	.	-	0	Parent=Os06t0719600-01
Chr06	irgsp1_rep	CDS	30568879	30568925	.	-	2	Parent=Os06t0719600-01
Chr06	irgsp1_rep	three_prime_UTR	30568538	30568878	.	-	.	Parent=Os06t0719600-01
Chr06	irgsp1_rep	mRNA	30577262	30578773	.	+	.	ID=Os06t0719900-00;Name=Os06t0719900-00;Locus_id=Os06g0719900;Note=Similar to endo/excinuclease amino terminal domain-containing protein.;Transcript_evidence=CT834222 (DDBJ%2C Best hit);ORF_evidence=XP_002881103.1 (RefSeq);TENOR=Os06t0719900-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	30577262	30577871	.	+	.	Parent=Os06t0719900-00
Chr06	irgsp1_rep	five_prime_UTR	30577964	30578010	.	+	.	Parent=Os06t0719900-00
Chr06	irgsp1_rep	CDS	30578011	30578137	.	+	0	Parent=Os06t0719900-00
Chr06	irgsp1_rep	CDS	30578373	30578410	.	+	2	Parent=Os06t0719900-00
Chr06	irgsp1_rep	three_prime_UTR	30578411	30578773	.	+	.	Parent=Os06t0719900-00
Chr06	irgsp1_rep	mRNA	30589192	30597178	.	+	.	ID=Os06t0720000-01;Name=Os06t0720000-01;Locus_id=Os06g0720000;Note=Conserved hypothetical protein.;Transcript_evidence=AK068825 (DDBJ%2C Best hit);ORF_evidence=Q53M62 (UniProt);NIAS_FLcDNA=J013162H04;TENOR=Os06t0720000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	30589192	30589671	.	+	.	Parent=Os06t0720000-01
Chr06	irgsp1_rep	five_prime_UTR	30589766	30589984	.	+	.	Parent=Os06t0720000-01
Chr06	irgsp1_rep	five_prime_UTR	30590399	30590481	.	+	.	Parent=Os06t0720000-01
Chr06	irgsp1_rep	CDS	30590482	30590500	.	+	0	Parent=Os06t0720000-01
Chr06	irgsp1_rep	CDS	30591203	30591327	.	+	2	Parent=Os06t0720000-01
Chr06	irgsp1_rep	CDS	30591440	30591582	.	+	0	Parent=Os06t0720000-01
Chr06	irgsp1_rep	CDS	30591653	30591701	.	+	1	Parent=Os06t0720000-01
Chr06	irgsp1_rep	three_prime_UTR	30591702	30591717	.	+	.	Parent=Os06t0720000-01
Chr06	irgsp1_rep	three_prime_UTR	30591798	30593392	.	+	.	Parent=Os06t0720000-01
Chr06	irgsp1_rep	three_prime_UTR	30596212	30596466	.	+	.	Parent=Os06t0720000-01
Chr06	irgsp1_rep	three_prime_UTR	30596845	30597178	.	+	.	Parent=Os06t0720000-01
Chr06	irgsp1_rep	mRNA	30589192	30592786	.	+	.	ID=Os06t0720000-02;Name=Os06t0720000-02;Locus_id=Os06g0720000;Note=Conserved hypothetical protein.;Transcript_evidence=AK103594 (DDBJ%2C Best hit);ORF_evidence=Q53M62 (UniProt);NIAS_FLcDNA=J033133D14;TENOR=Os06t0720000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	30589192	30589671	.	+	.	Parent=Os06t0720000-02
Chr06	irgsp1_rep	five_prime_UTR	30589766	30589857	.	+	.	Parent=Os06t0720000-02
Chr06	irgsp1_rep	CDS	30589858	30589984	.	+	0	Parent=Os06t0720000-02
Chr06	irgsp1_rep	CDS	30591203	30591327	.	+	2	Parent=Os06t0720000-02
Chr06	irgsp1_rep	CDS	30591440	30591582	.	+	0	Parent=Os06t0720000-02
Chr06	irgsp1_rep	CDS	30591653	30591701	.	+	1	Parent=Os06t0720000-02
Chr06	irgsp1_rep	three_prime_UTR	30591702	30591717	.	+	.	Parent=Os06t0720000-02
Chr06	irgsp1_rep	three_prime_UTR	30591798	30592786	.	+	.	Parent=Os06t0720000-02
Chr06	irgsp1_rep	mRNA	30589222	30592707	.	+	.	ID=Os06t0720000-03;Name=Os06t0720000-03;Locus_id=Os06g0720000;Note=Similar to H0124E07.1 protein.;Transcript_evidence=AK105741 (DDBJ%2C Best hit);ORF_evidence=Q25AH2 (UniProt);NIAS_FLcDNA=001-202-A08;TENOR=Os06t0720000-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	30589222	30589671	.	+	.	Parent=Os06t0720000-03
Chr06	irgsp1_rep	five_prime_UTR	30589766	30589857	.	+	.	Parent=Os06t0720000-03
Chr06	irgsp1_rep	CDS	30589858	30589984	.	+	0	Parent=Os06t0720000-03
Chr06	irgsp1_rep	CDS	30591203	30591327	.	+	2	Parent=Os06t0720000-03
Chr06	irgsp1_rep	CDS	30591396	30591455	.	+	0	Parent=Os06t0720000-03
Chr06	irgsp1_rep	three_prime_UTR	30591456	30591582	.	+	.	Parent=Os06t0720000-03
Chr06	irgsp1_rep	three_prime_UTR	30591653	30591717	.	+	.	Parent=Os06t0720000-03
Chr06	irgsp1_rep	three_prime_UTR	30591798	30592707	.	+	.	Parent=Os06t0720000-03
Chr06	irgsp1_rep	mRNA	30577264	30583136	.	-	.	ID=Os06t0720100-00;Name=Os06t0720100-00;Locus_id=Os06g0720100;Note=Hypothetical gene.;Transcript_evidence=AK242749 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;TENOR=Os06t0720100-00;KEGG=Os06t0720100-00
Chr06	irgsp1_rep	five_prime_UTR	30582258	30583136	.	-	.	Parent=Os06t0720100-00
Chr06	irgsp1_rep	CDS	30582176	30582257	.	-	0	Parent=Os06t0720100-00
Chr06	irgsp1_rep	CDS	30581843	30582074	.	-	2	Parent=Os06t0720100-00
Chr06	irgsp1_rep	CDS	30581741	30581828	.	-	1	Parent=Os06t0720100-00
Chr06	irgsp1_rep	CDS	30581599	30581625	.	-	0	Parent=Os06t0720100-00
Chr06	irgsp1_rep	three_prime_UTR	30581492	30581598	.	-	.	Parent=Os06t0720100-00
Chr06	irgsp1_rep	three_prime_UTR	30581066	30581396	.	-	.	Parent=Os06t0720100-00
Chr06	irgsp1_rep	three_prime_UTR	30580783	30580969	.	-	.	Parent=Os06t0720100-00
Chr06	irgsp1_rep	three_prime_UTR	30580426	30580690	.	-	.	Parent=Os06t0720100-00
Chr06	irgsp1_rep	three_prime_UTR	30580181	30580336	.	-	.	Parent=Os06t0720100-00
Chr06	irgsp1_rep	three_prime_UTR	30577964	30580017	.	-	.	Parent=Os06t0720100-00
Chr06	irgsp1_rep	three_prime_UTR	30577264	30577871	.	-	.	Parent=Os06t0720100-00
Chr06	irgsp1_rep	mRNA	30592631	30594142	.	-	.	ID=Os06t0720301-00;Name=Os06t0720301-00;Locus_id=Os06g0720301;Note=Similar to endo/excinuclease amino terminal domain-containing protein.;Transcript_evidence=CT834222 (DDBJ%2C Secondary hit);ORF_evidence=XP_002881103.1 (RefSeq);TENOR=Os06t0720301-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	30593533	30594142	.	-	.	Parent=Os06t0720301-00
Chr06	irgsp1_rep	five_prime_UTR	30593394	30593440	.	-	.	Parent=Os06t0720301-00
Chr06	irgsp1_rep	CDS	30593267	30593393	.	-	0	Parent=Os06t0720301-00
Chr06	irgsp1_rep	CDS	30592994	30593031	.	-	2	Parent=Os06t0720301-00
Chr06	irgsp1_rep	three_prime_UTR	30592631	30592993	.	-	.	Parent=Os06t0720301-00
Chr06	irgsp1_rep	mRNA	30600230	30602790	.	+	.	ID=Os06t0720400-01;Name=Os06t0720400-01;Locus_id=Os06g0720400;Note=Hypothetical conserved gene.;Transcript_evidence=AK104784 (DDBJ%2C Best hit),AK060956 (DDBJ%2C Best hit),AK099620 (DDBJ%2C Best hit);ORF_evidence=NP_001058607.1 (RefSeq);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=001-039-D05,006-201-G10,J013053D15;Expression=AK060956;TENOR=Os06t0720400-01;KEGG=Os06t0720400-01
Chr06	irgsp1_rep	five_prime_UTR	30600230	30600283	.	+	.	Parent=Os06t0720400-01
Chr06	irgsp1_rep	CDS	30600284	30601703	.	+	0	Parent=Os06t0720400-01
Chr06	irgsp1_rep	CDS	30602400	30602446	.	+	2	Parent=Os06t0720400-01
Chr06	irgsp1_rep	three_prime_UTR	30602447	30602790	.	+	.	Parent=Os06t0720400-01
Chr06	irgsp1_rep	mRNA	30604216	30610503	.	-	.	ID=Os06t0720500-01;Name=Os06t0720500-01;Locus_id=Os06g0720500;Note=Similar to Class III homeodomain-leucine zipper protein.;Transcript_evidence=AK289228 (DDBJ%2C Best hit),AK243446 (DDBJ%2C Best hit);ORF_evidence=A2WLR5 (UniProt);InterPro=Lipid-binding START (IPR002913),START-like domain (IPR023393);NIAS_FLcDNA=J100068O07,J100068O07;TENOR=Os06t0720500-01;KEGG=Os06t0720500-01
Chr06	irgsp1_rep	five_prime_UTR	30609902	30610503	.	-	.	Parent=Os06t0720500-01
Chr06	irgsp1_rep	five_prime_UTR	30609636	30609809	.	-	.	Parent=Os06t0720500-01
Chr06	irgsp1_rep	five_prime_UTR	30609203	30609400	.	-	.	Parent=Os06t0720500-01
Chr06	irgsp1_rep	five_prime_UTR	30608819	30608927	.	-	.	Parent=Os06t0720500-01
Chr06	irgsp1_rep	five_prime_UTR	30608394	30608489	.	-	.	Parent=Os06t0720500-01
Chr06	irgsp1_rep	five_prime_UTR	30607940	30607978	.	-	.	Parent=Os06t0720500-01
Chr06	irgsp1_rep	CDS	30607893	30607939	.	-	0	Parent=Os06t0720500-01
Chr06	irgsp1_rep	CDS	30607722	30607812	.	-	1	Parent=Os06t0720500-01
Chr06	irgsp1_rep	CDS	30607437	30607592	.	-	0	Parent=Os06t0720500-01
Chr06	irgsp1_rep	CDS	30607273	30607347	.	-	0	Parent=Os06t0720500-01
Chr06	irgsp1_rep	CDS	30607083	30607169	.	-	0	Parent=Os06t0720500-01
Chr06	irgsp1_rep	CDS	30606979	30606990	.	-	0	Parent=Os06t0720500-01
Chr06	irgsp1_rep	three_prime_UTR	30606804	30606978	.	-	.	Parent=Os06t0720500-01
Chr06	irgsp1_rep	three_prime_UTR	30606551	30606707	.	-	.	Parent=Os06t0720500-01
Chr06	irgsp1_rep	three_prime_UTR	30606377	30606454	.	-	.	Parent=Os06t0720500-01
Chr06	irgsp1_rep	three_prime_UTR	30606148	30606281	.	-	.	Parent=Os06t0720500-01
Chr06	irgsp1_rep	three_prime_UTR	30605713	30606032	.	-	.	Parent=Os06t0720500-01
Chr06	irgsp1_rep	three_prime_UTR	30604216	30605611	.	-	.	Parent=Os06t0720500-01
Chr06	irgsp1_rep	mRNA	30604203	30610503	.	-	.	ID=Os06t0720500-02;Name=Os06t0720500-02;Locus_id=Os06g0720500;Note=Similar to CORONA.;Transcript_evidence=AK120098 (DDBJ%2C Best hit);ORF_evidence=A2WLR5 (UniProt);InterPro=Lipid-binding START (IPR002913),START-like domain (IPR023393);NIAS_FLcDNA=J013022E11;Expression=AK120098;TENOR=Os06t0720500-02;KEGG=Os06t0720500-02
Chr06	irgsp1_rep	five_prime_UTR	30609902	30610503	.	-	.	Parent=Os06t0720500-02
Chr06	irgsp1_rep	five_prime_UTR	30609636	30609809	.	-	.	Parent=Os06t0720500-02
Chr06	irgsp1_rep	five_prime_UTR	30609198	30609400	.	-	.	Parent=Os06t0720500-02
Chr06	irgsp1_rep	five_prime_UTR	30608819	30608927	.	-	.	Parent=Os06t0720500-02
Chr06	irgsp1_rep	five_prime_UTR	30607899	30608489	.	-	.	Parent=Os06t0720500-02
Chr06	irgsp1_rep	CDS	30607722	30607898	.	-	0	Parent=Os06t0720500-02
Chr06	irgsp1_rep	CDS	30607437	30607592	.	-	0	Parent=Os06t0720500-02
Chr06	irgsp1_rep	CDS	30607264	30607347	.	-	0	Parent=Os06t0720500-02
Chr06	irgsp1_rep	three_prime_UTR	30607083	30607263	.	-	.	Parent=Os06t0720500-02
Chr06	irgsp1_rep	three_prime_UTR	30606804	30606990	.	-	.	Parent=Os06t0720500-02
Chr06	irgsp1_rep	three_prime_UTR	30606377	30606707	.	-	.	Parent=Os06t0720500-02
Chr06	irgsp1_rep	three_prime_UTR	30606148	30606281	.	-	.	Parent=Os06t0720500-02
Chr06	irgsp1_rep	three_prime_UTR	30605713	30606032	.	-	.	Parent=Os06t0720500-02
Chr06	irgsp1_rep	three_prime_UTR	30604203	30605611	.	-	.	Parent=Os06t0720500-02
Chr06	irgsp1_rep	mRNA	30604118	30610503	.	-	.	ID=Os06t0720500-03;Name=Os06t0720500-03;Locus_id=Os06g0720500;Note=Similar to CORONA.;Transcript_evidence=AK288694 (DDBJ%2C Best hit);ORF_evidence=A2WLR5 (UniProt);InterPro=Lipid-binding START (IPR002913),START-like domain (IPR023393);NIAS_FLcDNA=J090060N02;TENOR=Os06t0720500-03;KEGG=Os06t0720500-03
Chr06	irgsp1_rep	five_prime_UTR	30609902	30610503	.	-	.	Parent=Os06t0720500-03
Chr06	irgsp1_rep	five_prime_UTR	30607899	30609809	.	-	.	Parent=Os06t0720500-03
Chr06	irgsp1_rep	CDS	30607722	30607898	.	-	0	Parent=Os06t0720500-03
Chr06	irgsp1_rep	CDS	30607437	30607592	.	-	0	Parent=Os06t0720500-03
Chr06	irgsp1_rep	CDS	30607264	30607347	.	-	0	Parent=Os06t0720500-03
Chr06	irgsp1_rep	three_prime_UTR	30607083	30607263	.	-	.	Parent=Os06t0720500-03
Chr06	irgsp1_rep	three_prime_UTR	30606804	30606990	.	-	.	Parent=Os06t0720500-03
Chr06	irgsp1_rep	three_prime_UTR	30606377	30606707	.	-	.	Parent=Os06t0720500-03
Chr06	irgsp1_rep	three_prime_UTR	30606148	30606281	.	-	.	Parent=Os06t0720500-03
Chr06	irgsp1_rep	three_prime_UTR	30604118	30606032	.	-	.	Parent=Os06t0720500-03
Chr06	irgsp1_rep	mRNA	30604158	30610509	.	+	.	ID=Os06t0720601-01;Name=Os06t0720601-01;Locus_id=Os06g0720601;Note=Hypothetical gene.;Transcript_evidence=AK242749 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090050H14;TENOR=Os06t0720601-01;KEGG=Os06t0720601-01
Chr06	irgsp1_rep	five_prime_UTR	30604158	30604541	.	+	.	Parent=Os06t0720601-01
Chr06	irgsp1_rep	five_prime_UTR	30604653	30605529	.	+	.	Parent=Os06t0720601-01
Chr06	irgsp1_rep	CDS	30605530	30605611	.	+	0	Parent=Os06t0720601-01
Chr06	irgsp1_rep	CDS	30605713	30606008	.	+	2	Parent=Os06t0720601-01
Chr06	irgsp1_rep	three_prime_UTR	30606009	30606032	.	+	.	Parent=Os06t0720601-01
Chr06	irgsp1_rep	three_prime_UTR	30606148	30606281	.	+	.	Parent=Os06t0720601-01
Chr06	irgsp1_rep	three_prime_UTR	30606377	30606707	.	+	.	Parent=Os06t0720601-01
Chr06	irgsp1_rep	three_prime_UTR	30606804	30606990	.	+	.	Parent=Os06t0720601-01
Chr06	irgsp1_rep	three_prime_UTR	30607083	30607347	.	+	.	Parent=Os06t0720601-01
Chr06	irgsp1_rep	three_prime_UTR	30607437	30607592	.	+	.	Parent=Os06t0720601-01
Chr06	irgsp1_rep	three_prime_UTR	30607756	30609809	.	+	.	Parent=Os06t0720601-01
Chr06	irgsp1_rep	three_prime_UTR	30609902	30610509	.	+	.	Parent=Os06t0720601-01
Chr06	irgsp1_rep	mRNA	30616681	30619258	.	+	.	ID=Os06t0720700-01;Name=Os06t0720700-01;Locus_id=Os06g0720700;Note=Domain of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK242809 (DDBJ%2C Best hit);ORF_evidence=NP_001058600.1 (RefSeq);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=J090060J22;TENOR=Os06t0720700-01;KEGG=Os06t0720700-01
Chr06	irgsp1_rep	five_prime_UTR	30616681	30616734	.	+	.	Parent=Os06t0720700-01
Chr06	irgsp1_rep	CDS	30616735	30618154	.	+	0	Parent=Os06t0720700-01
Chr06	irgsp1_rep	CDS	30618851	30618897	.	+	2	Parent=Os06t0720700-01
Chr06	irgsp1_rep	three_prime_UTR	30618898	30619258	.	+	.	Parent=Os06t0720700-01
Chr06	irgsp1_rep	mRNA	30620816	30624219	.	-	.	ID=Os06t0720900-01;Name=Os06t0720900-01;Locus_id=Os06g0720900;RAP-DB Gene Symbol Synonym(s)=BZIP55%2C OsbZIP55%2C OsFD2;RAP-DB Gene Name Synonym(s)=b-ZIP TRANSCRIPTION FACTOR 55%2C b-ZIP transcription factor 55%2C FD Transcription Factor 2;CGSNL Gene Symbol=BZIP55;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 55;Oryzabase Gene Symbol Synonym(s)=OsbZIP55%2C OsFD2;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 55%2C FD Transcription Factor 2;Note=Basic leucine zipper (bZIP)-containing transcription factor%2C Leaf development;Transcript_evidence=AK243144;ORF_evidence=Q5Z4G3;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Basic-leucine zipper domain (IPR004827);NIAS_FLcDNA=J100032B03;Manual Curation=December 4%2C 2014;Literature_PMID=23324168,18065552;Oryzabase=10138;TENOR=Os06t0720900-01;KEGG=Os06t0720900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	30624097	30624219	.	-	.	Parent=Os06t0720900-01
Chr06	irgsp1_rep	CDS	30623746	30624096	.	-	0	Parent=Os06t0720900-01
Chr06	irgsp1_rep	CDS	30621748	30621825	.	-	0	Parent=Os06t0720900-01
Chr06	irgsp1_rep	CDS	30621416	30621490	.	-	0	Parent=Os06t0720900-01
Chr06	irgsp1_rep	three_prime_UTR	30621414	30621415	.	-	.	Parent=Os06t0720900-01
Chr06	irgsp1_rep	three_prime_UTR	30620816	30621321	.	-	.	Parent=Os06t0720900-01
Chr06	irgsp1_rep	mRNA	30645085	30652384	.	-	.	ID=Os06t0721600-00;Name=Os06t0721600-00;Locus_id=Os06g0721600;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001058606.2 (RefSeq);InterPro=Protein of unknown function DUF544 (IPR007518),Nucleic acid-binding%2C OB-fold-like (IPR016027);TENOR=Os06t0721600-00;KEGG=Os06t0721600-00
Chr06	irgsp1_rep	CDS	30651787	30652384	.	-	0	Parent=Os06t0721600-00
Chr06	irgsp1_rep	CDS	30651602	30651711	.	-	2	Parent=Os06t0721600-00
Chr06	irgsp1_rep	CDS	30651447	30651523	.	-	0	Parent=Os06t0721600-00
Chr06	irgsp1_rep	CDS	30651277	30651370	.	-	1	Parent=Os06t0721600-00
Chr06	irgsp1_rep	CDS	30651013	30651136	.	-	0	Parent=Os06t0721600-00
Chr06	irgsp1_rep	CDS	30650859	30650913	.	-	2	Parent=Os06t0721600-00
Chr06	irgsp1_rep	CDS	30650703	30650784	.	-	1	Parent=Os06t0721600-00
Chr06	irgsp1_rep	CDS	30650541	30650618	.	-	0	Parent=Os06t0721600-00
Chr06	irgsp1_rep	CDS	30650315	30650455	.	-	0	Parent=Os06t0721600-00
Chr06	irgsp1_rep	CDS	30649806	30650035	.	-	0	Parent=Os06t0721600-00
Chr06	irgsp1_rep	CDS	30649584	30649727	.	-	1	Parent=Os06t0721600-00
Chr06	irgsp1_rep	CDS	30649404	30649517	.	-	1	Parent=Os06t0721600-00
Chr06	irgsp1_rep	CDS	30648457	30649312	.	-	1	Parent=Os06t0721600-00
Chr06	irgsp1_rep	CDS	30648139	30648302	.	-	0	Parent=Os06t0721600-00
Chr06	irgsp1_rep	CDS	30648006	30648053	.	-	1	Parent=Os06t0721600-00
Chr06	irgsp1_rep	CDS	30645951	30646016	.	-	1	Parent=Os06t0721600-00
Chr06	irgsp1_rep	CDS	30645847	30645878	.	-	1	Parent=Os06t0721600-00
Chr06	irgsp1_rep	CDS	30645696	30645756	.	-	2	Parent=Os06t0721600-00
Chr06	irgsp1_rep	CDS	30645529	30645606	.	-	1	Parent=Os06t0721600-00
Chr06	irgsp1_rep	CDS	30645085	30645127	.	-	1	Parent=Os06t0721600-00
Chr06	irgsp1_rep	mRNA	30658369	30659202	.	-	.	ID=Os06t0721800-01;Name=Os06t0721800-01;Locus_id=Os06g0721800;CGSNL Gene Symbol=UCL19;CGSNL Gene Name=UCLACYANIN-LIKE PROTEIN 19;Oryzabase Gene Symbol Synonym(s)=OsUCL19;Oryzabase Gene Name Synonym(s)=uclacyanin-like protein 19;Note=Cupredoxin domain containing protein.;Transcript_evidence=AK243644 (DDBJ%2C Best hit);ORF_evidence=A2YH12 (UniProt);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Blue (type 1) copper domain (IPR000923),Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);NIAS_FLcDNA=J100088D04;Oryzabase=9768;TENOR=Os06t0721800-01;KEGG=Os06t0721800-01
Chr06	irgsp1_rep	five_prime_UTR	30659168	30659202	.	-	.	Parent=Os06t0721800-01
Chr06	irgsp1_rep	CDS	30659002	30659167	.	-	0	Parent=Os06t0721800-01
Chr06	irgsp1_rep	CDS	30658580	30658914	.	-	2	Parent=Os06t0721800-01
Chr06	irgsp1_rep	three_prime_UTR	30658369	30658579	.	-	.	Parent=Os06t0721800-01
Chr06	irgsp1_rep	mRNA	30663229	30665284	.	+	.	ID=Os06t0721900-00;Name=Os06t0721900-00;Locus_id=Os06g0721900;Note=Conserved hypothetical protein.;Transcript_evidence=AK365670 (DDBJ);ORF_evidence=Q5YLY9 (UniProt);TENOR=Os06t0721900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	30663229	30663283	.	+	0	Parent=Os06t0721900-00
Chr06	irgsp1_rep	CDS	30664218	30664842	.	+	2	Parent=Os06t0721900-00
Chr06	irgsp1_rep	CDS	30665134	30665284	.	+	1	Parent=Os06t0721900-00
Chr06	irgsp1_rep	mRNA	30666875	30669437	.	+	.	ID=Os06t0722100-01;Name=Os06t0722100-01;Locus_id=Os06g0722100;Note=Hypothetical conserved gene.;Transcript_evidence=AK068839 (DDBJ%2C Best hit);ORF_evidence=NP_001058607.1 (RefSeq);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=J013158H08;Expression=AK068839;TENOR=Os06t0722100-01;KEGG=Os06t0722100-01
Chr06	irgsp1_rep	five_prime_UTR	30666875	30666930	.	+	.	Parent=Os06t0722100-01
Chr06	irgsp1_rep	CDS	30666931	30667877	.	+	0	Parent=Os06t0722100-01
Chr06	irgsp1_rep	CDS	30667957	30668119	.	+	1	Parent=Os06t0722100-01
Chr06	irgsp1_rep	three_prime_UTR	30668120	30668288	.	+	.	Parent=Os06t0722100-01
Chr06	irgsp1_rep	three_prime_UTR	30668334	30668350	.	+	.	Parent=Os06t0722100-01
Chr06	irgsp1_rep	three_prime_UTR	30669047	30669437	.	+	.	Parent=Os06t0722100-01
Chr06	irgsp1_rep	mRNA	30670804	30677155	.	+	.	ID=Os06t0722201-00;Name=Os06t0722201-00;Locus_id=Os06g0722201;Note=Hypothetical gene.;Transcript_evidence=AK242749 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;TENOR=Os06t0722201-00;KEGG=Os06t0722201-00
Chr06	irgsp1_rep	five_prime_UTR	30670804	30671187	.	+	.	Parent=Os06t0722201-00
Chr06	irgsp1_rep	five_prime_UTR	30671299	30672175	.	+	.	Parent=Os06t0722201-00
Chr06	irgsp1_rep	CDS	30672176	30672257	.	+	0	Parent=Os06t0722201-00
Chr06	irgsp1_rep	CDS	30672359	30672654	.	+	2	Parent=Os06t0722201-00
Chr06	irgsp1_rep	three_prime_UTR	30672655	30672678	.	+	.	Parent=Os06t0722201-00
Chr06	irgsp1_rep	three_prime_UTR	30672794	30672927	.	+	.	Parent=Os06t0722201-00
Chr06	irgsp1_rep	three_prime_UTR	30673023	30673353	.	+	.	Parent=Os06t0722201-00
Chr06	irgsp1_rep	three_prime_UTR	30673450	30673636	.	+	.	Parent=Os06t0722201-00
Chr06	irgsp1_rep	three_prime_UTR	30673729	30673993	.	+	.	Parent=Os06t0722201-00
Chr06	irgsp1_rep	three_prime_UTR	30674083	30674238	.	+	.	Parent=Os06t0722201-00
Chr06	irgsp1_rep	three_prime_UTR	30674402	30676455	.	+	.	Parent=Os06t0722201-00
Chr06	irgsp1_rep	three_prime_UTR	30676548	30677155	.	+	.	Parent=Os06t0722201-00
Chr06	irgsp1_rep	mRNA	30670862	30677149	.	-	.	ID=Os06t0722300-01;Name=Os06t0722300-01;Locus_id=Os06g0722300;Note=Similar to Class III homeodomain-leucine zipper protein.;Transcript_evidence=AK289228 (DDBJ%2C Best hit),AK243446 (DDBJ%2C Best hit);ORF_evidence=A2WLR5 (UniProt);InterPro=Lipid-binding START (IPR002913),START-like domain (IPR023393);NIAS_FLcDNA=J100068O07,J100068O07;TENOR=Os06t0722300-01;KEGG=Os06t0722300-01
Chr06	irgsp1_rep	five_prime_UTR	30676548	30677149	.	-	.	Parent=Os06t0722300-01
Chr06	irgsp1_rep	five_prime_UTR	30676282	30676455	.	-	.	Parent=Os06t0722300-01
Chr06	irgsp1_rep	five_prime_UTR	30675849	30676046	.	-	.	Parent=Os06t0722300-01
Chr06	irgsp1_rep	five_prime_UTR	30675465	30675573	.	-	.	Parent=Os06t0722300-01
Chr06	irgsp1_rep	five_prime_UTR	30675040	30675135	.	-	.	Parent=Os06t0722300-01
Chr06	irgsp1_rep	five_prime_UTR	30674586	30674624	.	-	.	Parent=Os06t0722300-01
Chr06	irgsp1_rep	CDS	30674539	30674585	.	-	0	Parent=Os06t0722300-01
Chr06	irgsp1_rep	CDS	30674368	30674458	.	-	1	Parent=Os06t0722300-01
Chr06	irgsp1_rep	CDS	30674083	30674238	.	-	0	Parent=Os06t0722300-01
Chr06	irgsp1_rep	CDS	30673919	30673993	.	-	0	Parent=Os06t0722300-01
Chr06	irgsp1_rep	CDS	30673729	30673815	.	-	0	Parent=Os06t0722300-01
Chr06	irgsp1_rep	CDS	30673625	30673636	.	-	0	Parent=Os06t0722300-01
Chr06	irgsp1_rep	three_prime_UTR	30673450	30673624	.	-	.	Parent=Os06t0722300-01
Chr06	irgsp1_rep	three_prime_UTR	30673197	30673353	.	-	.	Parent=Os06t0722300-01
Chr06	irgsp1_rep	three_prime_UTR	30673023	30673100	.	-	.	Parent=Os06t0722300-01
Chr06	irgsp1_rep	three_prime_UTR	30672794	30672927	.	-	.	Parent=Os06t0722300-01
Chr06	irgsp1_rep	three_prime_UTR	30672359	30672678	.	-	.	Parent=Os06t0722300-01
Chr06	irgsp1_rep	three_prime_UTR	30670862	30672257	.	-	.	Parent=Os06t0722300-01
Chr06	irgsp1_rep	mRNA	30670849	30677149	.	-	.	ID=Os06t0722300-02;Name=Os06t0722300-02;Locus_id=Os06g0722300;Note=Similar to CORONA.;Transcript_evidence=AK120098 (DDBJ%2C Best hit);ORF_evidence=A2WLR5 (UniProt);InterPro=Lipid-binding START (IPR002913),START-like domain (IPR023393);NIAS_FLcDNA=J013022E11;Expression=AK120098;TENOR=Os06t0722300-02;KEGG=Os06t0722300-02
Chr06	irgsp1_rep	five_prime_UTR	30676548	30677149	.	-	.	Parent=Os06t0722300-02
Chr06	irgsp1_rep	five_prime_UTR	30676282	30676455	.	-	.	Parent=Os06t0722300-02
Chr06	irgsp1_rep	five_prime_UTR	30675844	30676046	.	-	.	Parent=Os06t0722300-02
Chr06	irgsp1_rep	five_prime_UTR	30675465	30675573	.	-	.	Parent=Os06t0722300-02
Chr06	irgsp1_rep	five_prime_UTR	30674545	30675135	.	-	.	Parent=Os06t0722300-02
Chr06	irgsp1_rep	CDS	30674368	30674544	.	-	0	Parent=Os06t0722300-02
Chr06	irgsp1_rep	CDS	30674083	30674238	.	-	0	Parent=Os06t0722300-02
Chr06	irgsp1_rep	CDS	30673910	30673993	.	-	0	Parent=Os06t0722300-02
Chr06	irgsp1_rep	three_prime_UTR	30673729	30673909	.	-	.	Parent=Os06t0722300-02
Chr06	irgsp1_rep	three_prime_UTR	30673450	30673636	.	-	.	Parent=Os06t0722300-02
Chr06	irgsp1_rep	three_prime_UTR	30673023	30673353	.	-	.	Parent=Os06t0722300-02
Chr06	irgsp1_rep	three_prime_UTR	30672794	30672927	.	-	.	Parent=Os06t0722300-02
Chr06	irgsp1_rep	three_prime_UTR	30672359	30672678	.	-	.	Parent=Os06t0722300-02
Chr06	irgsp1_rep	three_prime_UTR	30670849	30672257	.	-	.	Parent=Os06t0722300-02
Chr06	irgsp1_rep	mRNA	30682362	30684922	.	+	.	ID=Os06t0722450-01;Name=Os06t0722450-01;Locus_id=Os06g0722450;Note=Hypothetical conserved gene.;Transcript_evidence=AK104784 (DDBJ%2C Best hit),AK060956 (DDBJ%2C Best hit),AK099620 (DDBJ%2C Best hit);ORF_evidence=NP_001058607.1 (RefSeq);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=001-039-D05,006-201-G10,J013053D15;TENOR=Os06t0722450-01
Chr06	irgsp1_rep	five_prime_UTR	30682362	30682415	.	+	.	Parent=Os06t0722450-01
Chr06	irgsp1_rep	CDS	30682416	30683835	.	+	0	Parent=Os06t0722450-01
Chr06	irgsp1_rep	CDS	30684532	30684578	.	+	2	Parent=Os06t0722450-01
Chr06	irgsp1_rep	three_prime_UTR	30684579	30684922	.	+	.	Parent=Os06t0722450-01
Chr06	irgsp1_rep	mRNA	30686289	30692640	.	+	.	ID=Os06t0722600-00;Name=Os06t0722600-00;Locus_id=Os06g0722600;Note=Hypothetical gene.;Transcript_evidence=AK242749 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;TENOR=Os06t0722600-00;KEGG=Os06t0722600-00
Chr06	irgsp1_rep	five_prime_UTR	30686289	30686672	.	+	.	Parent=Os06t0722600-00
Chr06	irgsp1_rep	five_prime_UTR	30686784	30687660	.	+	.	Parent=Os06t0722600-00
Chr06	irgsp1_rep	CDS	30687661	30687742	.	+	0	Parent=Os06t0722600-00
Chr06	irgsp1_rep	CDS	30687844	30688139	.	+	2	Parent=Os06t0722600-00
Chr06	irgsp1_rep	three_prime_UTR	30688140	30688163	.	+	.	Parent=Os06t0722600-00
Chr06	irgsp1_rep	three_prime_UTR	30688279	30688412	.	+	.	Parent=Os06t0722600-00
Chr06	irgsp1_rep	three_prime_UTR	30688508	30688838	.	+	.	Parent=Os06t0722600-00
Chr06	irgsp1_rep	three_prime_UTR	30688935	30689121	.	+	.	Parent=Os06t0722600-00
Chr06	irgsp1_rep	three_prime_UTR	30689214	30689478	.	+	.	Parent=Os06t0722600-00
Chr06	irgsp1_rep	three_prime_UTR	30689568	30689723	.	+	.	Parent=Os06t0722600-00
Chr06	irgsp1_rep	three_prime_UTR	30689887	30691940	.	+	.	Parent=Os06t0722600-00
Chr06	irgsp1_rep	three_prime_UTR	30692033	30692640	.	+	.	Parent=Os06t0722600-00
Chr06	irgsp1_rep	mRNA	30686347	30692634	.	-	.	ID=Os06t0722650-01;Name=Os06t0722650-01;Locus_id=Os06g0722650;Note=Similar to Class III homeodomain-leucine zipper protein.;Transcript_evidence=AK243446 (DDBJ%2C Best hit),AK289228 (DDBJ%2C Best hit);ORF_evidence=A2WLR5 (UniProt);InterPro=Lipid-binding START (IPR002913),START-like domain (IPR023393);NIAS_FLcDNA=J100068O07,J100068O07;TENOR=Os06t0722650-01;KEGG=Os06t0722650-01
Chr06	irgsp1_rep	five_prime_UTR	30692033	30692634	.	-	.	Parent=Os06t0722650-01
Chr06	irgsp1_rep	five_prime_UTR	30691767	30691940	.	-	.	Parent=Os06t0722650-01
Chr06	irgsp1_rep	five_prime_UTR	30691334	30691531	.	-	.	Parent=Os06t0722650-01
Chr06	irgsp1_rep	five_prime_UTR	30690950	30691058	.	-	.	Parent=Os06t0722650-01
Chr06	irgsp1_rep	five_prime_UTR	30690525	30690620	.	-	.	Parent=Os06t0722650-01
Chr06	irgsp1_rep	five_prime_UTR	30690071	30690109	.	-	.	Parent=Os06t0722650-01
Chr06	irgsp1_rep	CDS	30690024	30690070	.	-	0	Parent=Os06t0722650-01
Chr06	irgsp1_rep	CDS	30689853	30689943	.	-	1	Parent=Os06t0722650-01
Chr06	irgsp1_rep	CDS	30689568	30689723	.	-	0	Parent=Os06t0722650-01
Chr06	irgsp1_rep	CDS	30689404	30689478	.	-	0	Parent=Os06t0722650-01
Chr06	irgsp1_rep	CDS	30689214	30689300	.	-	0	Parent=Os06t0722650-01
Chr06	irgsp1_rep	CDS	30689110	30689121	.	-	0	Parent=Os06t0722650-01
Chr06	irgsp1_rep	three_prime_UTR	30688935	30689109	.	-	.	Parent=Os06t0722650-01
Chr06	irgsp1_rep	three_prime_UTR	30688682	30688838	.	-	.	Parent=Os06t0722650-01
Chr06	irgsp1_rep	three_prime_UTR	30688508	30688585	.	-	.	Parent=Os06t0722650-01
Chr06	irgsp1_rep	three_prime_UTR	30688279	30688412	.	-	.	Parent=Os06t0722650-01
Chr06	irgsp1_rep	three_prime_UTR	30687844	30688163	.	-	.	Parent=Os06t0722650-01
Chr06	irgsp1_rep	three_prime_UTR	30686347	30687742	.	-	.	Parent=Os06t0722650-01
Chr06	irgsp1_rep	mRNA	30686334	30692634	.	-	.	ID=Os06t0722650-02;Name=Os06t0722650-02;Locus_id=Os06g0722650;Note=Similar to CORONA.;Transcript_evidence=AK120098 (DDBJ%2C Best hit);ORF_evidence=A2WLR5 (UniProt);InterPro=Lipid-binding START (IPR002913),START-like domain (IPR023393);NIAS_FLcDNA=J013022E11;Expression=AK120098;TENOR=Os06t0722650-02;KEGG=Os06t0722650-02
Chr06	irgsp1_rep	five_prime_UTR	30692033	30692634	.	-	.	Parent=Os06t0722650-02
Chr06	irgsp1_rep	five_prime_UTR	30691767	30691940	.	-	.	Parent=Os06t0722650-02
Chr06	irgsp1_rep	five_prime_UTR	30691329	30691531	.	-	.	Parent=Os06t0722650-02
Chr06	irgsp1_rep	five_prime_UTR	30690950	30691058	.	-	.	Parent=Os06t0722650-02
Chr06	irgsp1_rep	five_prime_UTR	30690030	30690620	.	-	.	Parent=Os06t0722650-02
Chr06	irgsp1_rep	CDS	30689853	30690029	.	-	0	Parent=Os06t0722650-02
Chr06	irgsp1_rep	CDS	30689568	30689723	.	-	0	Parent=Os06t0722650-02
Chr06	irgsp1_rep	CDS	30689395	30689478	.	-	0	Parent=Os06t0722650-02
Chr06	irgsp1_rep	three_prime_UTR	30689214	30689394	.	-	.	Parent=Os06t0722650-02
Chr06	irgsp1_rep	three_prime_UTR	30688935	30689121	.	-	.	Parent=Os06t0722650-02
Chr06	irgsp1_rep	three_prime_UTR	30688508	30688838	.	-	.	Parent=Os06t0722650-02
Chr06	irgsp1_rep	three_prime_UTR	30688279	30688412	.	-	.	Parent=Os06t0722650-02
Chr06	irgsp1_rep	three_prime_UTR	30687844	30688163	.	-	.	Parent=Os06t0722650-02
Chr06	irgsp1_rep	three_prime_UTR	30686334	30687742	.	-	.	Parent=Os06t0722650-02
Chr06	irgsp1_rep	mRNA	30697865	30700425	.	+	.	ID=Os06t0722700-01;Name=Os06t0722700-01;Locus_id=Os06g0722700;Note=Hypothetical conserved gene.;Transcript_evidence=AK060956 (DDBJ%2C Best hit),AK099620 (DDBJ%2C Best hit),AK104784 (DDBJ%2C Best hit);ORF_evidence=NP_001058607.1 (RefSeq);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=006-201-G10,J013053D15,001-039-D05;Expression=AK060956;TENOR=Os06t0722700-01;KEGG=Os06t0722700-01
Chr06	irgsp1_rep	five_prime_UTR	30697865	30697918	.	+	.	Parent=Os06t0722700-01
Chr06	irgsp1_rep	CDS	30697919	30699338	.	+	0	Parent=Os06t0722700-01
Chr06	irgsp1_rep	CDS	30700035	30700081	.	+	2	Parent=Os06t0722700-01
Chr06	irgsp1_rep	three_prime_UTR	30700082	30700425	.	+	.	Parent=Os06t0722700-01
Chr06	irgsp1_rep	mRNA	30725255	30732556	.	-	.	ID=Os06t0723400-00;Name=Os06t0723400-00;Locus_id=Os06g0723400;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5YLZ3 (UniProt);InterPro=Protein of unknown function DUF544 (IPR007518),Nucleic acid-binding%2C OB-fold-like (IPR016027);TENOR=Os06t0723400-00;KEGG=Os06t0723400-00
Chr06	irgsp1_rep	CDS	30731959	30732556	.	-	0	Parent=Os06t0723400-00
Chr06	irgsp1_rep	CDS	30731774	30731883	.	-	2	Parent=Os06t0723400-00
Chr06	irgsp1_rep	CDS	30731619	30731695	.	-	0	Parent=Os06t0723400-00
Chr06	irgsp1_rep	CDS	30731449	30731542	.	-	1	Parent=Os06t0723400-00
Chr06	irgsp1_rep	CDS	30731185	30731308	.	-	0	Parent=Os06t0723400-00
Chr06	irgsp1_rep	CDS	30731031	30731085	.	-	2	Parent=Os06t0723400-00
Chr06	irgsp1_rep	CDS	30730873	30730954	.	-	1	Parent=Os06t0723400-00
Chr06	irgsp1_rep	CDS	30730711	30730788	.	-	0	Parent=Os06t0723400-00
Chr06	irgsp1_rep	CDS	30730485	30730625	.	-	0	Parent=Os06t0723400-00
Chr06	irgsp1_rep	CDS	30729976	30730205	.	-	0	Parent=Os06t0723400-00
Chr06	irgsp1_rep	CDS	30729754	30729897	.	-	1	Parent=Os06t0723400-00
Chr06	irgsp1_rep	CDS	30729574	30729687	.	-	1	Parent=Os06t0723400-00
Chr06	irgsp1_rep	CDS	30728627	30729482	.	-	1	Parent=Os06t0723400-00
Chr06	irgsp1_rep	CDS	30728309	30728472	.	-	0	Parent=Os06t0723400-00
Chr06	irgsp1_rep	CDS	30728176	30728223	.	-	1	Parent=Os06t0723400-00
Chr06	irgsp1_rep	CDS	30726121	30726186	.	-	1	Parent=Os06t0723400-00
Chr06	irgsp1_rep	CDS	30726017	30726048	.	-	1	Parent=Os06t0723400-00
Chr06	irgsp1_rep	CDS	30725866	30725926	.	-	2	Parent=Os06t0723400-00
Chr06	irgsp1_rep	CDS	30725699	30725776	.	-	1	Parent=Os06t0723400-00
Chr06	irgsp1_rep	CDS	30725255	30725297	.	-	1	Parent=Os06t0723400-00
Chr06	irgsp1_rep	mRNA	30747994	30750049	.	+	.	ID=Os06t0723650-00;Name=Os06t0723650-00;Locus_id=Os06g0723650;Note=Conserved hypothetical protein.;Transcript_evidence=AK365670 (DDBJ);ORF_evidence=Q5YLY9 (UniProt);TENOR=Os06t0723650-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	30747994	30748048	.	+	0	Parent=Os06t0723650-00
Chr06	irgsp1_rep	CDS	30748983	30749607	.	+	2	Parent=Os06t0723650-00
Chr06	irgsp1_rep	CDS	30749899	30750049	.	+	1	Parent=Os06t0723650-00
Chr06	irgsp1_rep	mRNA	30751183	30753743	.	+	.	ID=Os06t0723900-01;Name=Os06t0723900-01;Locus_id=Os06g0723900;Note=Hypothetical conserved gene.;Transcript_evidence=AK104784 (DDBJ%2C Best hit),AK060956 (DDBJ%2C Best hit),AK099620 (DDBJ%2C Best hit);ORF_evidence=NP_001058607.1 (RefSeq);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=001-039-D05,006-201-G10,J013053D15;TENOR=Os06t0723900-01
Chr06	irgsp1_rep	five_prime_UTR	30751183	30751236	.	+	.	Parent=Os06t0723900-01
Chr06	irgsp1_rep	CDS	30751237	30752656	.	+	0	Parent=Os06t0723900-01
Chr06	irgsp1_rep	CDS	30753353	30753399	.	+	2	Parent=Os06t0723900-01
Chr06	irgsp1_rep	three_prime_UTR	30753400	30753743	.	+	.	Parent=Os06t0723900-01
Chr06	irgsp1_rep	mRNA	30754645	30758412	.	-	.	ID=Os06t0724000-01;Name=Os06t0724000-01;Locus_id=Os06g0724000;CGSNL Gene Symbol=BZIP56;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 56;Oryzabase Gene Symbol Synonym(s)=OsbZIP56%2C OsFD5;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 56%2C FD Transcription Factor 5;Note=Basic-leucine zipper (bZIP) transcription factor domain containing protein.;Transcript_evidence=AK108991 (DDBJ%2C Best hit);ORF_evidence=Q5Z4H6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);NIAS_FLcDNA=002-153-G01;Oryzabase=10139;TENOR=Os06t0724000-01
Chr06	irgsp1_rep	five_prime_UTR	30758054	30758412	.	-	.	Parent=Os06t0724000-01
Chr06	irgsp1_rep	CDS	30757703	30758053	.	-	0	Parent=Os06t0724000-01
Chr06	irgsp1_rep	CDS	30755705	30755782	.	-	0	Parent=Os06t0724000-01
Chr06	irgsp1_rep	CDS	30755373	30755447	.	-	0	Parent=Os06t0724000-01
Chr06	irgsp1_rep	three_prime_UTR	30754645	30755372	.	-	.	Parent=Os06t0724000-01
Chr06	irgsp1_rep	mRNA	30757599	30758408	.	-	.	ID=Os06t0724000-02;Name=Os06t0724000-02;Locus_id=Os06g0724000;CGSNL Gene Symbol=BZIP56;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 56;Oryzabase Gene Symbol Synonym(s)=OsbZIP56%2C OsFD5;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 56%2C FD Transcription Factor 5;Note=Hypothetical conserved gene.;Transcript_evidence=AK289259 (DDBJ%2C Best hit);ORF_evidence=Q5Z4H6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=bZIP transcription factor%2C bZIP-1 (IPR011616);NIAS_FLcDNA=J100084H14;Oryzabase=10139;TENOR=Os06t0724000-02;KEGG=Os06t0724000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	30758054	30758408	.	-	.	Parent=Os06t0724000-02
Chr06	irgsp1_rep	CDS	30757601	30758053	.	-	0	Parent=Os06t0724000-02
Chr06	irgsp1_rep	three_prime_UTR	30757599	30757600	.	-	.	Parent=Os06t0724000-02
Chr06	irgsp1_rep	mRNA	30754774	30758176	.	-	.	ID=Os06t0724000-03;Name=Os06t0724000-03;Locus_id=Os06g0724000;RAP-DB Gene Symbol Synonym(s)=BZIP56%2C OsbZIP56%2C OsFD5;RAP-DB Gene Name Synonym(s)=b-ZIP TRANSCRIPTION FACTOR 56%2C b-ZIP transcription factor 56%2C FD Transcription Factor 5;CGSNL Gene Symbol=BZIP56;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 56;Oryzabase Gene Symbol Synonym(s)=OsbZIP56%2C OsFD5;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 56%2C FD Transcription Factor 5;Note=Basic leucine zipper (bZIP)-containing transcription factor;Transcript_evidence=AK243144;ORF_evidence=Q5Z4G3;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Basic-leucine zipper domain (IPR004827);Manual Curation=December 4%2C 2014;Literature_PMID=23324168,18065552;Oryzabase=10139
Chr06	irgsp1_rep	five_prime_UTR	30758054	30758176	.	-	.	Parent=Os06t0724000-03
Chr06	irgsp1_rep	CDS	30757703	30758053	.	-	0	Parent=Os06t0724000-03
Chr06	irgsp1_rep	CDS	30755705	30755782	.	-	0	Parent=Os06t0724000-03
Chr06	irgsp1_rep	CDS	30755373	30755447	.	-	0	Parent=Os06t0724000-03
Chr06	irgsp1_rep	three_prime_UTR	30754774	30755278	.	-	.	Parent=Os06t0724000-03
Chr06	irgsp1_rep	mRNA	30762490	30768122	.	+	.	ID=Os06t0724100-01;Name=Os06t0724100-01;Locus_id=Os06g0724100;Oryzabase Gene Symbol Synonym(s)=FREE1%2C OsFREE1;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK119624 (DDBJ%2C Best hit),AK060793 (DDBJ%2C Best hit);ORF_evidence=E6NTZ2 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C FYVE-type (IPR000306),Zinc finger%2C FYVE/PHD-type (IPR011011),Pleckstrin homology-type (IPR011993),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C FYVE-related (IPR017455);NIAS_FLcDNA=002-117-H09,001-033-E06;Oryzabase=23718;TENOR=Os06t0724100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	30762490	30762602	.	+	.	Parent=Os06t0724100-01
Chr06	irgsp1_rep	CDS	30762603	30763247	.	+	0	Parent=Os06t0724100-01
Chr06	irgsp1_rep	CDS	30764504	30764590	.	+	0	Parent=Os06t0724100-01
Chr06	irgsp1_rep	CDS	30764690	30764821	.	+	0	Parent=Os06t0724100-01
Chr06	irgsp1_rep	CDS	30764917	30765063	.	+	0	Parent=Os06t0724100-01
Chr06	irgsp1_rep	CDS	30766276	30766341	.	+	0	Parent=Os06t0724100-01
Chr06	irgsp1_rep	CDS	30766420	30766530	.	+	0	Parent=Os06t0724100-01
Chr06	irgsp1_rep	CDS	30767134	30767223	.	+	0	Parent=Os06t0724100-01
Chr06	irgsp1_rep	CDS	30767452	30767485	.	+	0	Parent=Os06t0724100-01
Chr06	irgsp1_rep	CDS	30767568	30767644	.	+	2	Parent=Os06t0724100-01
Chr06	irgsp1_rep	CDS	30767730	30767807	.	+	0	Parent=Os06t0724100-01
Chr06	irgsp1_rep	three_prime_UTR	30767808	30768122	.	+	.	Parent=Os06t0724100-01
Chr06	irgsp1_rep	mRNA	30762528	30768140	.	+	.	ID=Os06t0724100-02;Name=Os06t0724100-02;Locus_id=Os06g0724100;Oryzabase Gene Symbol Synonym(s)=FREE1%2C OsFREE1;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK066985 (DDBJ%2C Best hit);ORF_evidence=E6NTZ2 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C FYVE-type (IPR000306),Zinc finger%2C FYVE/PHD-type (IPR011011),Pleckstrin homology-type (IPR011993),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C FYVE-related (IPR017455);NIAS_FLcDNA=J013092E10;Oryzabase=23718;Expression=AK066985;TENOR=Os06t0724100-02;KEGG=Os06t0724100-02
Chr06	irgsp1_rep	five_prime_UTR	30762528	30762602	.	+	.	Parent=Os06t0724100-02
Chr06	irgsp1_rep	CDS	30762603	30763247	.	+	0	Parent=Os06t0724100-02
Chr06	irgsp1_rep	CDS	30764504	30764590	.	+	0	Parent=Os06t0724100-02
Chr06	irgsp1_rep	CDS	30764690	30764821	.	+	0	Parent=Os06t0724100-02
Chr06	irgsp1_rep	CDS	30764917	30765063	.	+	0	Parent=Os06t0724100-02
Chr06	irgsp1_rep	CDS	30766276	30766341	.	+	0	Parent=Os06t0724100-02
Chr06	irgsp1_rep	CDS	30766420	30766530	.	+	0	Parent=Os06t0724100-02
Chr06	irgsp1_rep	CDS	30767134	30767223	.	+	0	Parent=Os06t0724100-02
Chr06	irgsp1_rep	CDS	30767452	30767485	.	+	0	Parent=Os06t0724100-02
Chr06	irgsp1_rep	CDS	30767568	30767644	.	+	2	Parent=Os06t0724100-02
Chr06	irgsp1_rep	CDS	30767730	30767807	.	+	0	Parent=Os06t0724100-02
Chr06	irgsp1_rep	three_prime_UTR	30767808	30768140	.	+	.	Parent=Os06t0724100-02
Chr06	irgsp1_rep	mRNA	30768629	30770564	.	+	.	ID=Os06t0724200-01;Name=Os06t0724200-01;Locus_id=Os06g0724200;Note=Conserved hypothetical protein.;Transcript_evidence=AK318561 (DDBJ%2C Best hit);ORF_evidence=NP_001058610.2 (RefSeq);NIAS_FLcDNA=J075188E03;TENOR=Os06t0724200-01;KEGG=Os06t0724200-01
Chr06	irgsp1_rep	five_prime_UTR	30768629	30768630	.	+	.	Parent=Os06t0724200-01
Chr06	irgsp1_rep	CDS	30768631	30768768	.	+	0	Parent=Os06t0724200-01
Chr06	irgsp1_rep	CDS	30769342	30769794	.	+	0	Parent=Os06t0724200-01
Chr06	irgsp1_rep	CDS	30769872	30770456	.	+	0	Parent=Os06t0724200-01
Chr06	irgsp1_rep	three_prime_UTR	30770457	30770564	.	+	.	Parent=Os06t0724200-01
Chr06	irgsp1_rep	mRNA	30770728	30773813	.	-	.	ID=Os06t0724300-01;Name=Os06t0724300-01;Locus_id=Os06g0724300;Note=Protein of unknown function DUF616 family protein.;Transcript_evidence=AK121941 (DDBJ%2C Best hit),AK059191 (DDBJ%2C Best hit);ORF_evidence=E4MX43 (UniProt);InterPro=Protein of unknown function DUF616 (IPR006852);NIAS_FLcDNA=J033107E19,001-023-H04;TENOR=Os06t0724300-01
Chr06	irgsp1_rep	five_prime_UTR	30773712	30773813	.	-	.	Parent=Os06t0724300-01
Chr06	irgsp1_rep	CDS	30773693	30773711	.	-	0	Parent=Os06t0724300-01
Chr06	irgsp1_rep	CDS	30773443	30773601	.	-	2	Parent=Os06t0724300-01
Chr06	irgsp1_rep	CDS	30772919	30772990	.	-	2	Parent=Os06t0724300-01
Chr06	irgsp1_rep	CDS	30772647	30772835	.	-	2	Parent=Os06t0724300-01
Chr06	irgsp1_rep	CDS	30771767	30772181	.	-	2	Parent=Os06t0724300-01
Chr06	irgsp1_rep	CDS	30771494	30771678	.	-	1	Parent=Os06t0724300-01
Chr06	irgsp1_rep	CDS	30770994	30771361	.	-	2	Parent=Os06t0724300-01
Chr06	irgsp1_rep	three_prime_UTR	30770728	30770993	.	-	.	Parent=Os06t0724300-01
Chr06	irgsp1_rep	mRNA	30774201	30776615	.	-	.	ID=Os06t0724400-01;Name=Os06t0724400-01;Locus_id=Os06g0724400;Oryzabase Gene Symbol Synonym(s)=OsDNLZ1%2C DNLZ1;Oryzabase Gene Name Synonym(s)=DNL type zinc finger domain-containing protein 1;Note=Zinc finger%2C Zim17-type family protein.;Transcript_evidence=AK099961 (DDBJ%2C Best hit);ORF_evidence=B6TGI7 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C DNL-type (IPR007853),Mitochondrial import protein TIM15 (IPR024158);NIAS_FLcDNA=J013126G09;Oryzabase=19249;Expression=AK099961;TENOR=Os06t0724400-01;KEGG=Os06t0724400-01
Chr06	irgsp1_rep	five_prime_UTR	30776559	30776615	.	-	.	Parent=Os06t0724400-01
Chr06	irgsp1_rep	CDS	30776444	30776558	.	-	0	Parent=Os06t0724400-01
Chr06	irgsp1_rep	CDS	30776284	30776378	.	-	2	Parent=Os06t0724400-01
Chr06	irgsp1_rep	CDS	30775724	30775972	.	-	0	Parent=Os06t0724400-01
Chr06	irgsp1_rep	CDS	30774428	30774586	.	-	0	Parent=Os06t0724400-01
Chr06	irgsp1_rep	three_prime_UTR	30774201	30774427	.	-	.	Parent=Os06t0724400-01
Chr06	irgsp1_rep	mRNA	30776908	30779585	.	-	.	ID=Os06t0724500-01;Name=Os06t0724500-01;Locus_id=Os06g0724500;Oryzabase Gene Symbol Synonym(s)=OsWD40-135;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK068831 (DDBJ%2C Best hit);ORF_evidence=NP_001167678.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J013158G13;Oryzabase=10816;Expression=AK068831;TENOR=Os06t0724500-01;KEGG=Os06t0724500-01
Chr06	irgsp1_rep	five_prime_UTR	30779539	30779585	.	-	.	Parent=Os06t0724500-01
Chr06	irgsp1_rep	CDS	30779443	30779538	.	-	0	Parent=Os06t0724500-01
Chr06	irgsp1_rep	CDS	30778854	30779105	.	-	0	Parent=Os06t0724500-01
Chr06	irgsp1_rep	CDS	30778601	30778744	.	-	0	Parent=Os06t0724500-01
Chr06	irgsp1_rep	CDS	30777797	30778516	.	-	0	Parent=Os06t0724500-01
Chr06	irgsp1_rep	CDS	30777141	30777371	.	-	0	Parent=Os06t0724500-01
Chr06	irgsp1_rep	three_prime_UTR	30776908	30777140	.	-	.	Parent=Os06t0724500-01
Chr06	irgsp1_rep	mRNA	30779796	30784595	.	+	.	ID=Os06t0724600-01;Name=Os06t0724600-01;Locus_id=Os06g0724600;Note=Similar to Transformer-SR ribonucleoprotein (Fragment).;Transcript_evidence=AK073850 (DDBJ%2C Best hit);ORF_evidence=NP_001149397.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033073F11;Expression=AK073850;TENOR=Os06t0724600-01;KEGG=Os06t0724600-01
Chr06	irgsp1_rep	five_prime_UTR	30779796	30779923	.	+	.	Parent=Os06t0724600-01
Chr06	irgsp1_rep	CDS	30779924	30779926	.	+	0	Parent=Os06t0724600-01
Chr06	irgsp1_rep	CDS	30780018	30780040	.	+	0	Parent=Os06t0724600-01
Chr06	irgsp1_rep	CDS	30781831	30781971	.	+	1	Parent=Os06t0724600-01
Chr06	irgsp1_rep	CDS	30782229	30782331	.	+	1	Parent=Os06t0724600-01
Chr06	irgsp1_rep	CDS	30782411	30782560	.	+	0	Parent=Os06t0724600-01
Chr06	irgsp1_rep	CDS	30782658	30782732	.	+	0	Parent=Os06t0724600-01
Chr06	irgsp1_rep	three_prime_UTR	30782733	30782996	.	+	.	Parent=Os06t0724600-01
Chr06	irgsp1_rep	three_prime_UTR	30783085	30783130	.	+	.	Parent=Os06t0724600-01
Chr06	irgsp1_rep	three_prime_UTR	30783284	30784595	.	+	.	Parent=Os06t0724600-01
Chr06	irgsp1_rep	mRNA	30779796	30784198	.	+	.	ID=Os06t0724600-02;Name=Os06t0724600-02;Locus_id=Os06g0724600;Note=Similar to transformer-2 protein.;Transcript_evidence=AK103177 (DDBJ%2C Best hit);ORF_evidence=NP_001149397.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033121H17;Expression=AK103177;TENOR=Os06t0724600-02;KEGG=Os06t0724600-02
Chr06	irgsp1_rep	five_prime_UTR	30779796	30779923	.	+	.	Parent=Os06t0724600-02
Chr06	irgsp1_rep	CDS	30779924	30779926	.	+	0	Parent=Os06t0724600-02
Chr06	irgsp1_rep	CDS	30780018	30780040	.	+	0	Parent=Os06t0724600-02
Chr06	irgsp1_rep	CDS	30781831	30781971	.	+	1	Parent=Os06t0724600-02
Chr06	irgsp1_rep	CDS	30782229	30782331	.	+	1	Parent=Os06t0724600-02
Chr06	irgsp1_rep	CDS	30782411	30782560	.	+	0	Parent=Os06t0724600-02
Chr06	irgsp1_rep	CDS	30783085	30783130	.	+	0	Parent=Os06t0724600-02
Chr06	irgsp1_rep	CDS	30783284	30783639	.	+	2	Parent=Os06t0724600-02
Chr06	irgsp1_rep	three_prime_UTR	30783640	30784198	.	+	.	Parent=Os06t0724600-02
Chr06	irgsp1_rep	mRNA	30781829	30783642	.	-	.	ID=Os06t0724650-00;Name=Os06t0724650-00;Locus_id=Os06g0724650;Note=Hypothetical gene.;Transcript_evidence=BT016380 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0724650-00
Chr06	irgsp1_rep	five_prime_UTR	30783514	30783642	.	-	.	Parent=Os06t0724650-00
Chr06	irgsp1_rep	CDS	30783282	30783513	.	-	0	Parent=Os06t0724650-00
Chr06	irgsp1_rep	CDS	30783083	30783156	.	-	2	Parent=Os06t0724650-00
Chr06	irgsp1_rep	CDS	30782547	30782558	.	-	0	Parent=Os06t0724650-00
Chr06	irgsp1_rep	three_prime_UTR	30782416	30782546	.	-	.	Parent=Os06t0724650-00
Chr06	irgsp1_rep	three_prime_UTR	30782227	30782340	.	-	.	Parent=Os06t0724650-00
Chr06	irgsp1_rep	three_prime_UTR	30781829	30781969	.	-	.	Parent=Os06t0724650-00
Chr06	irgsp1_rep	mRNA	30797115	30806042	.	-	.	ID=Os06t0724700-01;Name=Os06t0724700-01;Locus_id=Os06g0724700;CGSNL Gene Symbol=ATR;CGSNL Gene Name=ATM-RAD3-RELATED PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsATR;Oryzabase Gene Name Synonym(s)=ATR homolog%2C ATM-rad3-related protein;Note=Phosphatidylinositol 3- and 4-kinase%2C catalytic domain containing protein.;Transcript_evidence=AK109634 (DDBJ%2C Best hit);ORF_evidence=A2YH41 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Phosphatidylinositol 3-/4-kinase%2C catalytic (IPR000403),PIK-related kinase%2C FATC (IPR003152),Protein kinase-like domain (IPR011009),Phosphatidylinositol 3/4-kinase%2C conserved site (IPR018936);NIAS_FLcDNA=002-138-D07;Oryzabase=20419;Expression=AK109634;TENOR=Os06t0724700-01;KEGG=Os06t0724700-01 (EC:2.7.11.1)
Chr06	irgsp1_rep	five_prime_UTR	30806042	30806042	.	-	.	Parent=Os06t0724700-01
Chr06	irgsp1_rep	CDS	30805589	30806041	.	-	0	Parent=Os06t0724700-01
Chr06	irgsp1_rep	CDS	30804644	30805264	.	-	0	Parent=Os06t0724700-01
Chr06	irgsp1_rep	CDS	30804348	30804542	.	-	0	Parent=Os06t0724700-01
Chr06	irgsp1_rep	CDS	30804085	30804252	.	-	0	Parent=Os06t0724700-01
Chr06	irgsp1_rep	three_prime_UTR	30804075	30804084	.	-	.	Parent=Os06t0724700-01
Chr06	irgsp1_rep	three_prime_UTR	30797115	30797622	.	-	.	Parent=Os06t0724700-01
Chr06	irgsp1_rep	mRNA	30799538	30801183	.	+	.	ID=Os06t0724800-01;Name=Os06t0724800-01;Locus_id=Os06g0724800;Oryzabase Gene Symbol Synonym(s)=OsbHLH155;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 155;Note=Basic helix-loop-helix dimerisation region bHLH domain containing protein.;Transcript_evidence=AK063523 (DDBJ%2C Best hit);ORF_evidence=B8B2K0 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=001-116-H12;Oryzabase=10933;Expression=AK063523;TENOR=Os06t0724800-01;KEGG=Os06t0724800-01
Chr06	irgsp1_rep	five_prime_UTR	30799538	30799677	.	+	.	Parent=Os06t0724800-01
Chr06	irgsp1_rep	CDS	30799678	30800319	.	+	0	Parent=Os06t0724800-01
Chr06	irgsp1_rep	three_prime_UTR	30800320	30800493	.	+	.	Parent=Os06t0724800-01
Chr06	irgsp1_rep	three_prime_UTR	30800566	30800736	.	+	.	Parent=Os06t0724800-01
Chr06	irgsp1_rep	three_prime_UTR	30800881	30801183	.	+	.	Parent=Os06t0724800-01
Chr06	irgsp1_rep	mRNA	30817440	30823353	.	+	.	ID=Os06t0724900-01;Name=Os06t0724900-01;Locus_id=Os06g0724900;RAP-DB Gene Symbol Synonym(s)=ILA1%2C ILA1%2C ila1;RAP-DB Gene Name Synonym(s)=INCREASED LEAF ANGLE 1%2C increased leaf angle1;CGSNL Gene Symbol=ILA1;CGSNL Gene Name=INCREASED LEAF ANGLE 1;Oryzabase Gene Symbol Synonym(s)=OsILA1%2C OsACTPK4%2C ACTPK4;Oryzabase Gene Name Synonym(s)=increased leaf angle1%2C ACT domain containing protein kinase 4;Note=Raf-Like MAPKKK%2C Mechanical tissue formation at the leaf lamina joint;Transcript_evidence=AK073747;ORF_evidence=Q5Z986;GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: metabolic process (GO:0008152),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: amino acid binding (GO:0016597),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=ACT domain (IPR002912),Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine-threonine/tyrosine-protein kinase catalytic domain (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J033068K18;Manual Curation=September 19%2C 2014;Literature_PMID=22207574;Oryzabase=10221;TENOR=Os06t0724900-01
Chr06	irgsp1_rep	five_prime_UTR	30817440	30817485	.	+	.	Parent=Os06t0724900-01
Chr06	irgsp1_rep	CDS	30817486	30817676	.	+	0	Parent=Os06t0724900-01
Chr06	irgsp1_rep	CDS	30818032	30818146	.	+	1	Parent=Os06t0724900-01
Chr06	irgsp1_rep	CDS	30818246	30818331	.	+	0	Parent=Os06t0724900-01
Chr06	irgsp1_rep	CDS	30818453	30818563	.	+	1	Parent=Os06t0724900-01
Chr06	irgsp1_rep	CDS	30819055	30819109	.	+	1	Parent=Os06t0724900-01
Chr06	irgsp1_rep	CDS	30819228	30819338	.	+	0	Parent=Os06t0724900-01
Chr06	irgsp1_rep	CDS	30820248	30820304	.	+	0	Parent=Os06t0724900-01
Chr06	irgsp1_rep	CDS	30820748	30820917	.	+	0	Parent=Os06t0724900-01
Chr06	irgsp1_rep	CDS	30821004	30821111	.	+	1	Parent=Os06t0724900-01
Chr06	irgsp1_rep	CDS	30821544	30821617	.	+	1	Parent=Os06t0724900-01
Chr06	irgsp1_rep	CDS	30821722	30821895	.	+	2	Parent=Os06t0724900-01
Chr06	irgsp1_rep	CDS	30822087	30822184	.	+	2	Parent=Os06t0724900-01
Chr06	irgsp1_rep	CDS	30822403	30822483	.	+	0	Parent=Os06t0724900-01
Chr06	irgsp1_rep	CDS	30822575	30822628	.	+	0	Parent=Os06t0724900-01
Chr06	irgsp1_rep	CDS	30822835	30822969	.	+	0	Parent=Os06t0724900-01
Chr06	irgsp1_rep	CDS	30823063	30823137	.	+	0	Parent=Os06t0724900-01
Chr06	irgsp1_rep	three_prime_UTR	30823138	30823353	.	+	.	Parent=Os06t0724900-01
Chr06	irgsp1_rep	mRNA	30823392	30825734	.	-	.	ID=Os06t0725000-01;Name=Os06t0725000-01;Locus_id=Os06g0725000;CGSNL Gene Symbol=STR9;CGSNL Gene Name=SULFURTRANSFERASE 9;Oryzabase Gene Symbol Synonym(s)=OsStr9;Oryzabase Gene Name Synonym(s)=Sulfurtransferase 9;Note=Similar to Senescence-associated protein DIN1.;Transcript_evidence=AK111790 (DDBJ%2C Best hit);ORF_evidence=B6U016 (UniProt);InterPro=Rhodanese-like (IPR001763);NIAS_FLcDNA=J023095D11;Oryzabase=12059;TENOR=Os06t0725000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	30825665	30825734	.	-	.	Parent=Os06t0725000-01
Chr06	irgsp1_rep	five_prime_UTR	30825471	30825596	.	-	.	Parent=Os06t0725000-01
Chr06	irgsp1_rep	CDS	30825310	30825470	.	-	0	Parent=Os06t0725000-01
Chr06	irgsp1_rep	CDS	30824982	30825055	.	-	1	Parent=Os06t0725000-01
Chr06	irgsp1_rep	CDS	30824066	30824136	.	-	2	Parent=Os06t0725000-01
Chr06	irgsp1_rep	CDS	30823926	30823979	.	-	0	Parent=Os06t0725000-01
Chr06	irgsp1_rep	CDS	30823760	30823834	.	-	0	Parent=Os06t0725000-01
Chr06	irgsp1_rep	three_prime_UTR	30823392	30823759	.	-	.	Parent=Os06t0725000-01
Chr06	irgsp1_rep	mRNA	30828273	30830398	.	-	.	ID=Os06t0725100-01;Name=Os06t0725100-01;Locus_id=Os06g0725100;CGSNL Gene Symbol=GELP89;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 89;Oryzabase Gene Symbol Synonym(s)=OsGELP89;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 89;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK110292 (DDBJ%2C Best hit);ORF_evidence=A2YH44 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=002-163-G01;Oryzabase=11039;Expression=AK110292;TENOR=Os06t0725100-01;KEGG=Os06t0725100-01
Chr06	irgsp1_rep	five_prime_UTR	30830224	30830398	.	-	.	Parent=Os06t0725100-01
Chr06	irgsp1_rep	CDS	30829938	30830223	.	-	0	Parent=Os06t0725100-01
Chr06	irgsp1_rep	CDS	30829709	30829839	.	-	2	Parent=Os06t0725100-01
Chr06	irgsp1_rep	CDS	30829358	30829609	.	-	0	Parent=Os06t0725100-01
Chr06	irgsp1_rep	CDS	30828541	30829017	.	-	0	Parent=Os06t0725100-01
Chr06	irgsp1_rep	three_prime_UTR	30828273	30828540	.	-	.	Parent=Os06t0725100-01
Chr06	irgsp1_rep	mRNA	30828644	30829855	.	+	.	ID=Os06t0725150-00;Name=Os06t0725150-00;Locus_id=Os06g0725150;Note=Hypothetical protein.;Transcript_evidence=EU943117 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0725150-00
Chr06	irgsp1_rep	five_prime_UTR	30828644	30828645	.	+	.	Parent=Os06t0725150-00
Chr06	irgsp1_rep	CDS	30828646	30829062	.	+	0	Parent=Os06t0725150-00
Chr06	irgsp1_rep	three_prime_UTR	30829063	30829096	.	+	.	Parent=Os06t0725150-00
Chr06	irgsp1_rep	three_prime_UTR	30829339	30829606	.	+	.	Parent=Os06t0725150-00
Chr06	irgsp1_rep	three_prime_UTR	30829698	30829855	.	+	.	Parent=Os06t0725150-00
Chr06	irgsp1_rep	mRNA	30838067	30839951	.	-	.	ID=Os06t0725200-01;Name=Os06t0725200-01;Locus_id=Os06g0725200;CGSNL Gene Symbol=GELP90;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 90;Oryzabase Gene Symbol Synonym(s)=OsGELP90;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 90;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK065261 (DDBJ%2C Best hit);ORF_evidence=B8B2K4 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=J013002J21;Oryzabase=11040;Expression=AK065261;TENOR=Os06t0725200-01;KEGG=Os06t0725200-01
Chr06	irgsp1_rep	five_prime_UTR	30839903	30839951	.	-	.	Parent=Os06t0725200-01
Chr06	irgsp1_rep	CDS	30839774	30839902	.	-	0	Parent=Os06t0725200-01
Chr06	irgsp1_rep	CDS	30839614	30839713	.	-	0	Parent=Os06t0725200-01
Chr06	irgsp1_rep	CDS	30839317	30839465	.	-	2	Parent=Os06t0725200-01
Chr06	irgsp1_rep	CDS	30838914	30839165	.	-	0	Parent=Os06t0725200-01
Chr06	irgsp1_rep	CDS	30838337	30838813	.	-	0	Parent=Os06t0725200-01
Chr06	irgsp1_rep	three_prime_UTR	30838067	30838336	.	-	.	Parent=Os06t0725200-01
Chr06	irgsp1_rep	mRNA	30838440	30839473	.	+	.	ID=Os06t0725250-00;Name=Os06t0725250-00;Locus_id=Os06g0725250;Note=Hypothetical protein.;Transcript_evidence=EU943117 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0725250-00
Chr06	irgsp1_rep	five_prime_UTR	30838440	30838868	.	+	.	Parent=Os06t0725250-00
Chr06	irgsp1_rep	CDS	30838869	30839162	.	+	0	Parent=Os06t0725250-00
Chr06	irgsp1_rep	CDS	30839305	30839473	.	+	0	Parent=Os06t0725250-00
Chr06	irgsp1_rep	mRNA	30846360	30847877	.	+	.	ID=Os06t0725300-01;Name=Os06t0725300-01;Locus_id=Os06g0725300;Note=Barwin-related endoglucanase domain containing protein.;Transcript_evidence=AK072728 (DDBJ%2C Best hit);ORF_evidence=Q5Z980 (UniProt);InterPro=Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);NIAS_FLcDNA=J023140D21;Expression=AK072728;TENOR=Os06t0725300-01;KEGG=Os06t0725300-01
Chr06	irgsp1_rep	five_prime_UTR	30846360	30846400	.	+	.	Parent=Os06t0725300-01
Chr06	irgsp1_rep	CDS	30846401	30846574	.	+	0	Parent=Os06t0725300-01
Chr06	irgsp1_rep	CDS	30846682	30846783	.	+	0	Parent=Os06t0725300-01
Chr06	irgsp1_rep	CDS	30846907	30847572	.	+	0	Parent=Os06t0725300-01
Chr06	irgsp1_rep	three_prime_UTR	30847573	30847877	.	+	.	Parent=Os06t0725300-01
Chr06	irgsp1_rep	mRNA	30846904	30847573	.	-	.	ID=Os06t0725350-00;Name=Os06t0725350-00;Locus_id=Os06g0725350;Note=Hypothetical gene.;Transcript_evidence=tplb0017d24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0725350-00;KEGG=Os06t0725350-00
Chr06	irgsp1_rep	five_prime_UTR	30847573	30847573	.	-	.	Parent=Os06t0725350-00
Chr06	irgsp1_rep	CDS	30847105	30847572	.	-	0	Parent=Os06t0725350-00
Chr06	irgsp1_rep	three_prime_UTR	30846904	30847104	.	-	.	Parent=Os06t0725350-00
Chr06	irgsp1_rep	mRNA	30848392	30850674	.	+	.	ID=Os06t0725400-01;Name=Os06t0725400-01;Locus_id=Os06g0725400;Note=Similar to BLE1 protein.;Transcript_evidence=AK241158 (DDBJ%2C Best hit);ORF_evidence=Q8S937 (UniProt);NIAS_FLcDNA=J065114J19;TENOR=Os06t0725400-01;KEGG=Os06t0725400-01
Chr06	irgsp1_rep	five_prime_UTR	30848392	30848410	.	+	.	Parent=Os06t0725400-01
Chr06	irgsp1_rep	CDS	30848411	30848502	.	+	0	Parent=Os06t0725400-01
Chr06	irgsp1_rep	CDS	30849344	30849389	.	+	1	Parent=Os06t0725400-01
Chr06	irgsp1_rep	CDS	30849466	30849528	.	+	0	Parent=Os06t0725400-01
Chr06	irgsp1_rep	CDS	30850244	30850264	.	+	0	Parent=Os06t0725400-01
Chr06	irgsp1_rep	three_prime_UTR	30850265	30850674	.	+	.	Parent=Os06t0725400-01
Chr06	irgsp1_rep	mRNA	30855251	30856121	.	+	.	ID=Os06t0725500-00;Name=Os06t0725500-00;Locus_id=Os06g0725500;Note=Protein of unknown function DUF241%2C plant family protein.;Transcript_evidence=EU952888 (DDBJ);ORF_evidence=NP_001058623.1 (RefSeq);InterPro=Protein of unknown function DUF241%2C plant (IPR004320);TENOR=Os06t0725500-00;KEGG=Os06t0725500-00
Chr06	irgsp1_rep	five_prime_UTR	30855251	30855269	.	+	.	Parent=Os06t0725500-00
Chr06	irgsp1_rep	CDS	30855270	30856121	.	+	0	Parent=Os06t0725500-00
Chr06	irgsp1_rep	mRNA	30855372	30859440	.	-	.	ID=Os06t0725550-00;Name=Os06t0725550-00;Locus_id=Os06g0725550;Note=Hypothetical protein.;Transcript_evidence=EU942482 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0725550-00
Chr06	irgsp1_rep	five_prime_UTR	30859370	30859440	.	-	.	Parent=Os06t0725550-00
Chr06	irgsp1_rep	CDS	30859064	30859369	.	-	0	Parent=Os06t0725550-00
Chr06	irgsp1_rep	CDS	30855372	30855863	.	-	0	Parent=Os06t0725550-00
Chr06	irgsp1_rep	mRNA	30866005	30866895	.	+	.	ID=Os06t0725700-00;Name=Os06t0725700-00;Locus_id=Os06g0725700;Note=Protein of unknown function DUF241%2C plant family protein.;Transcript_evidence=AK361424 (DDBJ);ORF_evidence=NP_001058624.1 (RefSeq);InterPro=Protein of unknown function DUF241%2C plant (IPR004320);TENOR=Os06t0725700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	30866005	30866012	.	+	.	Parent=Os06t0725700-00
Chr06	irgsp1_rep	CDS	30866013	30866879	.	+	0	Parent=Os06t0725700-00
Chr06	irgsp1_rep	three_prime_UTR	30866880	30866895	.	+	.	Parent=Os06t0725700-00
Chr06	irgsp1_rep	mRNA	30868979	30870033	.	+	.	ID=Os06t0725800-00;Name=Os06t0725800-00;Locus_id=Os06g0725800;Note=Hypothetical conserved gene.;Transcript_evidence=CT836272 (DDBJ%2C Best hit);ORF_evidence=Q5Z975 (UniProt);InterPro=Protein of unknown function DUF241%2C plant (IPR004320);TENOR=Os06t0725800-00;KEGG=Os06t0725800-00
Chr06	irgsp1_rep	five_prime_UTR	30868979	30868980	.	+	.	Parent=Os06t0725800-00
Chr06	irgsp1_rep	CDS	30868981	30869838	.	+	0	Parent=Os06t0725800-00
Chr06	irgsp1_rep	three_prime_UTR	30869839	30870033	.	+	.	Parent=Os06t0725800-00
Chr06	irgsp1_rep	mRNA	30870346	30877988	.	-	.	ID=Os06t0725900-01;Name=Os06t0725900-01;Locus_id=Os06g0725900;CGSNL Gene Symbol=FTSH1;Oryzabase Gene Symbol Synonym(s)=OsFtsH1%2C FtsH1;Note=Similar to Cell division protein ftsH homolog%2C chloroplast precursor (EC 3.4.24.-) (DS9).;Transcript_evidence=AK065019 (DDBJ%2C Best hit);ORF_evidence=Q5Z974 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: protein catabolic process (GO:0030163),Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=Peptidase M41 (IPR000642),ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960),Peptidase M41%2C FtsH (IPR005936);NIAS_FLcDNA=J013001F19;Oryzabase=21255;Expression=AK065019;TENOR=Os06t0725900-01;KEGG=Os06t0725900-01 (EC:3.4.24.-)
Chr06	irgsp1_rep	five_prime_UTR	30877954	30877988	.	-	.	Parent=Os06t0725900-01
Chr06	irgsp1_rep	CDS	30876718	30877953	.	-	0	Parent=Os06t0725900-01
Chr06	irgsp1_rep	CDS	30875766	30876012	.	-	0	Parent=Os06t0725900-01
Chr06	irgsp1_rep	CDS	30875488	30875671	.	-	2	Parent=Os06t0725900-01
Chr06	irgsp1_rep	CDS	30875227	30875398	.	-	1	Parent=Os06t0725900-01
Chr06	irgsp1_rep	CDS	30870625	30870846	.	-	0	Parent=Os06t0725900-01
Chr06	irgsp1_rep	three_prime_UTR	30870346	30870624	.	-	.	Parent=Os06t0725900-01
Chr06	irgsp1_rep	mRNA	30870453	30877047	.	-	.	ID=Os06t0725900-02;Name=Os06t0725900-02;Locus_id=Os06g0725900;CGSNL Gene Symbol=FTSH1;Oryzabase Gene Symbol Synonym(s)=OsFtsH1%2C FtsH1;Note=Similar to cDNA clone:J013001F19%2C full insert sequence.;Transcript_evidence=AK061771 (DDBJ%2C Best hit);ORF_evidence=B7EAD1 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: protein catabolic process (GO:0030163),Cellular Component: membrane (GO:0016020),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: ATP binding (GO:0005524);InterPro=Peptidase M41 (IPR000642),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960),Peptidase M41%2C FtsH (IPR005936);NIAS_FLcDNA=001-039-C10;Oryzabase=21255;Expression=AK061771;TENOR=Os06t0725900-02;KEGG=Os06t0725900-02 (EC:3.4.24.-)
Chr06	irgsp1_rep	CDS	30876718	30877047	.	-	0	Parent=Os06t0725900-02
Chr06	irgsp1_rep	CDS	30875766	30876012	.	-	0	Parent=Os06t0725900-02
Chr06	irgsp1_rep	CDS	30875488	30875671	.	-	2	Parent=Os06t0725900-02
Chr06	irgsp1_rep	CDS	30875227	30875398	.	-	1	Parent=Os06t0725900-02
Chr06	irgsp1_rep	CDS	30870625	30870846	.	-	0	Parent=Os06t0725900-02
Chr06	irgsp1_rep	three_prime_UTR	30870453	30870624	.	-	.	Parent=Os06t0725900-02
Chr06	irgsp1_rep	mRNA	30887215	30888383	.	+	.	ID=Os06t0726100-01;Name=Os06t0726100-01;Locus_id=Os06g0726100;RAP-DB Gene Symbol Synonym(s)=OsCHI11%2C Cht3;RAP-DB Gene Name Synonym(s)=Chitinase3%2C Pathogenesis related (PR)-3 chitinase 3;CGSNL Gene Symbol=CHT3;CGSNL Gene Name=CHITINASE 3;Oryzabase Gene Symbol Synonym(s)=Cht3*%2C Cht3%2C Cht-3%2C CH6%2C OsChia1c%2C CHI7%2C OsCHI11%2C CHI11;Oryzabase Gene Name Synonym(s)=Chitinase3%2C Basic endochitinase 1 precursor%2C Basic endochitinase 1%2C Chitinase 3%2C Pathogenesis related (PR)-3 chitinase 3%2C Class I chitinase c%2C Chitinase-3(class I)%2C CHITINASE7;Note=Pathogenesis related (PR)-3 chitinase 3%2C Resistance against sheath blight pathogen;Transcript_evidence=AK061280;ORF_evidence=P24626;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: chitin catabolic process (GO:0006032),Biological Process: cell wall macromolecule catabolic process (GO:0016998),Molecular Function: chitinase activity (GO:0004568),Molecular Function: chitin binding (GO:0008061);InterPro=Endochitinase-like superfamily (IPR036861),Lysozyme-like domain superfamily (IPR023346),Glycoside hydrolase%2C family 19 (IPR016283),Chitin-binding%2C type 1 (IPR001002),Glycoside hydrolase%2C family 19%2C catalytic (IPR000726),Chitin-binding%2C type 1%2C conserved site (IPR018371);NIAS_FLcDNA=006-212-F06;Manual Curation=July 20%2C 2020;Literature_PMID=26350069,16936841;Oryzabase=695;Expression=AK061280;TENOR=Os06t0726100-01;KEGG=Os06t0726100-01
Chr06	irgsp1_rep	five_prime_UTR	30887215	30887291	.	+	.	Parent=Os06t0726100-01
Chr06	irgsp1_rep	CDS	30887292	30888254	.	+	0	Parent=Os06t0726100-01
Chr06	irgsp1_rep	three_prime_UTR	30888255	30888383	.	+	.	Parent=Os06t0726100-01
Chr06	irgsp1_rep	mRNA	30890834	30892050	.	+	.	ID=Os06t0726200-02;Name=Os06t0726200-02;Locus_id=Os06g0726200;CGSNL Gene Symbol=CHT1;CGSNL Gene Name=CHITINASE 1;Oryzabase Gene Symbol Synonym(s)=Cht1*(Chi1)%2C Ch16%2C Cht1%2C CHT-1%2C CH16%2C RC24%2C OsChia1a%2C OsChia1%2C Chi1%2C Cht1*%2C Chi-1%2C Cht-1%2C Cht1%2C RCC1%2C OsCht-1;Oryzabase Gene Name Synonym(s)=Chitinase1%2C Chitinase 1%2C Pathogenesis related (PR)-3 chitinase 1%2C Class I chitinase a%2C Chitinase-1(class I);Note=Similar to Chitinase 1.;Transcript_evidence=AK061042 (DDBJ%2C Best hit),AK099339 (DDBJ%2C Best hit),AK104020 (DDBJ%2C Best hit),AK105798 (DDBJ%2C Best hit);ORF_evidence=Q42993 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: chitin catabolic process (GO:0006032),Biological Process: cell wall macromolecule catabolic process (GO:0016998),Molecular Function: chitinase activity (GO:0004568),Molecular Function: chitin binding (GO:0008061);InterPro=Glycoside hydrolase%2C family 19%2C catalytic (IPR000726),Chitin-binding%2C type 1 (IPR001002),Glycoside hydrolase%2C family 19 (IPR016283),Chitin-binding%2C type 1%2C conserved site (IPR018371),Lysozyme-like domain (IPR023346);NIAS_FLcDNA=006-205-D05,J033028I21,001-008-C04,001-203-A08;Oryzabase=694;TENOR=Os06t0726200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	30890834	30890888	.	+	.	Parent=Os06t0726200-02
Chr06	irgsp1_rep	CDS	30890889	30891860	.	+	0	Parent=Os06t0726200-02
Chr06	irgsp1_rep	three_prime_UTR	30891861	30892050	.	+	.	Parent=Os06t0726200-02
Chr06	irgsp1_rep	mRNA	30893359	30894592	.	-	.	ID=Os06t0726300-01;Name=Os06t0726300-01;Locus_id=Os06g0726300;RAP-DB Gene Symbol Synonym(s)=NAC95%2C ONAC095%2C ONAC95;RAP-DB Gene Name Synonym(s)=NAC DOMAIN-CONTAINING PROTEIN 95%2C NAC domain-containing protein 095%2C NAC domain-containing protein 95;CGSNL Gene Symbol=NAC95;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 95;Oryzabase Gene Symbol Synonym(s)=ONAC095%2C ONAC95;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 095%2C NAC domain-containing protein 95;Note=NAC transcription factor%2C Drought and cold stress tolerance;Transcript_evidence=XM_015788084;ORF_evidence=Q5Z7Q4;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=NAC domain (IPR003441);Manual Curation=September 23%2C 2016;Literature_PMID=27646344;Oryzabase=15859;TENOR=Os06t0726300-00
Chr06	irgsp1_rep	five_prime_UTR	30894524	30894592	.	-	.	Parent=Os06t0726300-01
Chr06	irgsp1_rep	CDS	30893645	30894523	.	-	0	Parent=Os06t0726300-01
Chr06	irgsp1_rep	three_prime_UTR	30893359	30893644	.	-	.	Parent=Os06t0726300-01
Chr06	irgsp1_rep	mRNA	30897378	30905803	.	-	.	ID=Os06t0726400-01;Name=Os06t0726400-01;Locus_id=Os06g0726400;RAP-DB Gene Symbol Synonym(s)=BEI%2C SBE1;RAP-DB Gene Name Synonym(s)=branching enzyme I%2C starch branching enzyme1;CGSNL Gene Symbol=SBE1;CGSNL Gene Name=STARCH BRANCHING ENZYME 1;Oryzabase Gene Symbol Synonym(s)=sbe1%2C Rbe1. Sbe1%2C sbe1*(QEI)%2C RBE1%2C BEI%2C SBE I%2C QEI%2C OsBEI%2C BE1;Oryzabase Gene Name Synonym(s)=starch branching enzyme1 (Q enzyme1)%2C starch branching enzyme1%2C Q enzyme1%2C starch branching enzyme 1%2C Q-enzyme 1%2C "1%2C 4-alpha-glucan branching enzyme%2C chloroplast precursor"%2C "1%2C 4-alpha-glucan branching enzyme%2C chloroplast"%2C "1%2C 4-alpha-glucan-branching enzyme%2C chloroplastic/amyloplastic"%2C Q-enzyme 1%2C starch branching enzyme 1%2C starch branching enzyme-1%2C branching enzyme-I%2C Q-Enzyme I%2C starch Branching enzyme isoform Type A%2C Branching enzyme isoform Type A%2C BE isoform type A%2C branching enzyme 1;Note=Starch branching enzyme;Transcript_evidence=AK119436;ORF_evidence=Q01401;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: glycogen biosynthetic process (GO:0005978),Molecular Function: catalytic activity (GO:0003824),Molecular Function: 1%2C4-alpha-glucan branching enzyme activity (GO:0003844),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Immunoglobulin E-set (IPR014756),Immunoglobulin-like fold (IPR013783),Glycoside hydrolase superfamily (IPR017853),Glycosyl hydrolase%2C all-beta (IPR013780),1%2C4-alpha-glucan-branching enzyme (IPR037439),Glycoside hydrolase%2C family 13%2C N-terminal (IPR004193),Glycosyl hydrolase%2C family 13%2C catalytic domain (IPR006047),Alpha-amylase/branching enzyme%2C C-terminal all beta (IPR006048);NIAS_FLcDNA=001-133-B02;Manual Curation=July 10%2C 2019;Literature_PMID=18997409;Oryzabase=730;Expression=AK119436;TENOR=Os06t0726400-01;KEGG=Os06t0726400-01 (EC:2.4.1.18)
Chr06	irgsp1_rep	five_prime_UTR	30905687	30905803	.	-	.	Parent=Os06t0726400-01
Chr06	irgsp1_rep	CDS	30905603	30905686	.	-	0	Parent=Os06t0726400-01
Chr06	irgsp1_rep	CDS	30905438	30905500	.	-	0	Parent=Os06t0726400-01
Chr06	irgsp1_rep	CDS	30903015	30903222	.	-	0	Parent=Os06t0726400-01
Chr06	irgsp1_rep	CDS	30902830	30902899	.	-	2	Parent=Os06t0726400-01
Chr06	irgsp1_rep	CDS	30902126	30902395	.	-	1	Parent=Os06t0726400-01
Chr06	irgsp1_rep	CDS	30901111	30902017	.	-	1	Parent=Os06t0726400-01
Chr06	irgsp1_rep	CDS	30900682	30900798	.	-	0	Parent=Os06t0726400-01
Chr06	irgsp1_rep	CDS	30900462	30900524	.	-	0	Parent=Os06t0726400-01
Chr06	irgsp1_rep	CDS	30899916	30900023	.	-	0	Parent=Os06t0726400-01
Chr06	irgsp1_rep	CDS	30899345	30899446	.	-	0	Parent=Os06t0726400-01
Chr06	irgsp1_rep	CDS	30899112	30899179	.	-	0	Parent=Os06t0726400-01
Chr06	irgsp1_rep	CDS	30898949	30899030	.	-	1	Parent=Os06t0726400-01
Chr06	irgsp1_rep	CDS	30898715	30898831	.	-	0	Parent=Os06t0726400-01
Chr06	irgsp1_rep	CDS	30898429	30898632	.	-	0	Parent=Os06t0726400-01
Chr06	irgsp1_rep	three_prime_UTR	30897968	30898428	.	-	.	Parent=Os06t0726400-01
Chr06	irgsp1_rep	three_prime_UTR	30897378	30897890	.	-	.	Parent=Os06t0726400-01
Chr06	irgsp1_rep	mRNA	30898124	30905538	.	-	.	ID=Os06t0726400-02;Name=Os06t0726400-02;Locus_id=Os06g0726400;CGSNL Gene Symbol=SBE1;CGSNL Gene Name=STARCH BRANCHING ENZYME 1;Oryzabase Gene Symbol Synonym(s)=sbe1%2C Rbe1. Sbe1%2C sbe1*(QEI)%2C RBE1%2C BEI%2C SBE I%2C QEI%2C OsBEI%2C BE1;Oryzabase Gene Name Synonym(s)=starch branching enzyme1 (Q enzyme1)%2C starch branching enzyme1%2C Q enzyme1%2C starch branching enzyme 1%2C Q-enzyme 1%2C "1%2C 4-alpha-glucan branching enzyme%2C chloroplast precursor"%2C "1%2C 4-alpha-glucan branching enzyme%2C chloroplast"%2C "1%2C 4-alpha-glucan-branching enzyme%2C chloroplastic/amyloplastic"%2C Q-enzyme 1%2C starch branching enzyme 1%2C starch branching enzyme-1%2C branching enzyme-I%2C Q-Enzyme I%2C starch Branching enzyme isoform Type A%2C Branching enzyme isoform Type A%2C BE isoform type A%2C branching enzyme 1;Note=Similar to 1%2C4-alpha-glucan-branching enzyme%2C chloroplastic/amyloplastic.;Transcript_evidence=AK065121 (DDBJ%2C Best hit);ORF_evidence=D0TZI4 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 13%2C N-terminal (IPR004193),Glycosyl hydrolase%2C family 13%2C catalytic domain (IPR006047),Alpha-amylase%2C C-terminal all beta (IPR006048),Glycosyl hydrolase%2C family 13%2C subfamily%2C catalytic domain (IPR006589),Glycosyl hydrolase%2C family 13%2C all-beta (IPR013780),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Immunoglobulin-like fold (IPR013783),Immunoglobulin E-set (IPR014756),Alpha amylase (IPR015902),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J013001O19;Oryzabase=730;Expression=AK065121;TENOR=Os06t0726400-02;KEGG=Os06t0726400-02 (EC:2.4.1.18)
Chr06	irgsp1_rep	five_prime_UTR	30905519	30905538	.	-	.	Parent=Os06t0726400-02
Chr06	irgsp1_rep	CDS	30905438	30905518	.	-	0	Parent=Os06t0726400-02
Chr06	irgsp1_rep	CDS	30903015	30903222	.	-	0	Parent=Os06t0726400-02
Chr06	irgsp1_rep	CDS	30902830	30902899	.	-	2	Parent=Os06t0726400-02
Chr06	irgsp1_rep	CDS	30902126	30902395	.	-	1	Parent=Os06t0726400-02
Chr06	irgsp1_rep	CDS	30901111	30902017	.	-	1	Parent=Os06t0726400-02
Chr06	irgsp1_rep	CDS	30900682	30900798	.	-	0	Parent=Os06t0726400-02
Chr06	irgsp1_rep	CDS	30900462	30900524	.	-	0	Parent=Os06t0726400-02
Chr06	irgsp1_rep	CDS	30899916	30900023	.	-	0	Parent=Os06t0726400-02
Chr06	irgsp1_rep	CDS	30899345	30899446	.	-	0	Parent=Os06t0726400-02
Chr06	irgsp1_rep	CDS	30899112	30899179	.	-	0	Parent=Os06t0726400-02
Chr06	irgsp1_rep	CDS	30898949	30899030	.	-	1	Parent=Os06t0726400-02
Chr06	irgsp1_rep	CDS	30898715	30898831	.	-	0	Parent=Os06t0726400-02
Chr06	irgsp1_rep	CDS	30898429	30898632	.	-	0	Parent=Os06t0726400-02
Chr06	irgsp1_rep	three_prime_UTR	30898124	30898428	.	-	.	Parent=Os06t0726400-02
Chr06	irgsp1_rep	mRNA	30904759	30905385	.	-	.	ID=Os06t0726400-03;Name=Os06t0726400-03;Locus_id=Os06g0726400;CGSNL Gene Symbol=SBE1;CGSNL Gene Name=STARCH BRANCHING ENZYME 1;Oryzabase Gene Symbol Synonym(s)=sbe1%2C Rbe1. Sbe1%2C sbe1*(QEI)%2C RBE1%2C BEI%2C SBE I%2C QEI%2C OsBEI%2C BE1;Oryzabase Gene Name Synonym(s)=starch branching enzyme1 (Q enzyme1)%2C starch branching enzyme1%2C Q enzyme1%2C starch branching enzyme 1%2C Q-enzyme 1%2C "1%2C 4-alpha-glucan branching enzyme%2C chloroplast precursor"%2C "1%2C 4-alpha-glucan branching enzyme%2C chloroplast"%2C "1%2C 4-alpha-glucan-branching enzyme%2C chloroplastic/amyloplastic"%2C Q-enzyme 1%2C starch branching enzyme 1%2C starch branching enzyme-1%2C branching enzyme-I%2C Q-Enzyme I%2C starch Branching enzyme isoform Type A%2C Branching enzyme isoform Type A%2C BE isoform type A%2C branching enzyme 1;Note=Hypothetical conserved gene.;Transcript_evidence=AK120332 (DDBJ%2C Best hit);ORF_evidence=A3BFK2 (UniProt);NIAS_FLcDNA=J013058O09;Oryzabase=730;TENOR=Os06t0726400-03;KEGG=Os06t0726400-03
Chr06	irgsp1_rep	five_prime_UTR	30905097	30905385	.	-	.	Parent=Os06t0726400-03
Chr06	irgsp1_rep	CDS	30904797	30905096	.	-	0	Parent=Os06t0726400-03
Chr06	irgsp1_rep	three_prime_UTR	30904759	30904796	.	-	.	Parent=Os06t0726400-03
Chr06	irgsp1_rep	mRNA	30898181	30905366	.	-	.	ID=Os06t0726400-04;Name=Os06t0726400-04;Locus_id=Os06g0726400;RAP-DB Gene Symbol Synonym(s)=BEI%2C SBE1;RAP-DB Gene Name Synonym(s)=branching enzyme I%2C starch branching enzyme1;CGSNL Gene Symbol=SBE1;CGSNL Gene Name=STARCH BRANCHING ENZYME 1;Oryzabase Gene Symbol Synonym(s)=sbe1%2C Rbe1. Sbe1%2C sbe1*(QEI)%2C RBE1%2C BEI%2C SBE I%2C QEI%2C OsBEI%2C BE1;Oryzabase Gene Name Synonym(s)=starch branching enzyme1 (Q enzyme1)%2C starch branching enzyme1%2C Q enzyme1%2C starch branching enzyme 1%2C Q-enzyme 1%2C "1%2C 4-alpha-glucan branching enzyme%2C chloroplast precursor"%2C "1%2C 4-alpha-glucan branching enzyme%2C chloroplast"%2C "1%2C 4-alpha-glucan-branching enzyme%2C chloroplastic/amyloplastic"%2C Q-enzyme 1%2C starch branching enzyme 1%2C starch branching enzyme-1%2C branching enzyme-I%2C Q-Enzyme I%2C starch Branching enzyme isoform Type A%2C Branching enzyme isoform Type A%2C BE isoform type A%2C branching enzyme 1;Note=Starch branching enzyme%2C Splicing variant;Transcript_evidence=AK068920;ORF_evidence=Q01401-2;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: glycogen biosynthetic process (GO:0005978),Molecular Function: catalytic activity (GO:0003824),Molecular Function: 1%2C4-alpha-glucan branching enzyme activity (GO:0003844),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Immunoglobulin E-set (IPR014756),Immunoglobulin-like fold (IPR013783),Glycoside hydrolase superfamily (IPR017853),Glycosyl hydrolase%2C all-beta (IPR013780),1%2C4-alpha-glucan-branching enzyme (IPR037439),Glycoside hydrolase%2C family 13%2C N-terminal (IPR004193),Glycosyl hydrolase%2C family 13%2C catalytic domain (IPR006047),Alpha-amylase/branching enzyme%2C C-terminal all beta (IPR006048);NIAS_FLcDNA=J013170H02;Manual Curation=July 10%2C 2019;Oryzabase=730;Expression=AK068920;TENOR=Os06t0726400-04;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	30904107	30905366	.	-	.	Parent=Os06t0726400-04
Chr06	irgsp1_rep	five_prime_UTR	30903175	30903222	.	-	.	Parent=Os06t0726400-04
Chr06	irgsp1_rep	CDS	30903015	30903174	.	-	0	Parent=Os06t0726400-04
Chr06	irgsp1_rep	CDS	30902830	30902899	.	-	2	Parent=Os06t0726400-04
Chr06	irgsp1_rep	CDS	30902126	30902395	.	-	1	Parent=Os06t0726400-04
Chr06	irgsp1_rep	CDS	30901111	30902017	.	-	1	Parent=Os06t0726400-04
Chr06	irgsp1_rep	CDS	30900682	30900798	.	-	0	Parent=Os06t0726400-04
Chr06	irgsp1_rep	CDS	30900462	30900524	.	-	0	Parent=Os06t0726400-04
Chr06	irgsp1_rep	CDS	30899916	30900023	.	-	0	Parent=Os06t0726400-04
Chr06	irgsp1_rep	CDS	30899345	30899446	.	-	0	Parent=Os06t0726400-04
Chr06	irgsp1_rep	CDS	30899112	30899179	.	-	0	Parent=Os06t0726400-04
Chr06	irgsp1_rep	CDS	30898949	30899030	.	-	1	Parent=Os06t0726400-04
Chr06	irgsp1_rep	CDS	30898715	30898831	.	-	0	Parent=Os06t0726400-04
Chr06	irgsp1_rep	CDS	30898429	30898632	.	-	0	Parent=Os06t0726400-04
Chr06	irgsp1_rep	three_prime_UTR	30898181	30898428	.	-	.	Parent=Os06t0726400-04
Chr06	irgsp1_rep	mRNA	30900676	30902017	.	+	.	ID=Os06t0726501-00;Name=Os06t0726501-00;Locus_id=Os06g0726501;Note=Non-protein coding transcript.;Transcript_evidence=tplb0001a06 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os06t0726501-00
Chr06	irgsp1_rep	exon	30900676	30900783	.	+	.	Parent=Os06t0726501-00
Chr06	irgsp1_rep	exon	30901094	30902017	.	+	.	Parent=Os06t0726501-00
Chr06	irgsp1_rep	mRNA	30910098	30913486	.	-	.	ID=Os06t0726600-01;Name=Os06t0726600-01;Locus_id=Os06g0726600;Oryzabase Gene Symbol Synonym(s)=OsMac1;Oryzabase Gene Name Synonym(s)=MAP-kinase activating protein 1;Note=Conserved hypothetical protein.;Transcript_evidence=AK058839 (DDBJ%2C Best hit);ORF_evidence=B8AN91 (UniProt);NIAS_FLcDNA=001-004-D09;Oryzabase=11546;TENOR=Os06t0726600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	30913238	30913486	.	-	.	Parent=Os06t0726600-01
Chr06	irgsp1_rep	CDS	30913212	30913237	.	-	0	Parent=Os06t0726600-01
Chr06	irgsp1_rep	CDS	30912803	30912926	.	-	1	Parent=Os06t0726600-01
Chr06	irgsp1_rep	CDS	30910190	30910300	.	-	0	Parent=Os06t0726600-01
Chr06	irgsp1_rep	three_prime_UTR	30910098	30910189	.	-	.	Parent=Os06t0726600-01
Chr06	irgsp1_rep	mRNA	30907699	30913463	.	-	.	ID=Os06t0726600-02;Name=Os06t0726600-02;Locus_id=Os06g0726600;Oryzabase Gene Symbol Synonym(s)=OsMac1;Oryzabase Gene Name Synonym(s)=MAP-kinase activating protein 1;Note=Protein of unknown function family protein.;Transcript_evidence=AK112103 (DDBJ%2C Best hit);ORF_evidence=Q01J99 (UniProt);InterPro=Protein of unknown function DUF300 (IPR005178);NIAS_FLcDNA=002-110-E04;Oryzabase=11546;Expression=AK112103;TENOR=Os06t0726600-02;KEGG=Os06t0726600-02
Chr06	irgsp1_rep	five_prime_UTR	30913212	30913463	.	-	.	Parent=Os06t0726600-02
Chr06	irgsp1_rep	five_prime_UTR	30912803	30912926	.	-	.	Parent=Os06t0726600-02
Chr06	irgsp1_rep	five_prime_UTR	30910098	30910300	.	-	.	Parent=Os06t0726600-02
Chr06	irgsp1_rep	CDS	30909948	30910097	.	-	0	Parent=Os06t0726600-02
Chr06	irgsp1_rep	CDS	30909787	30909843	.	-	0	Parent=Os06t0726600-02
Chr06	irgsp1_rep	CDS	30909574	30909682	.	-	0	Parent=Os06t0726600-02
Chr06	irgsp1_rep	CDS	30909309	30909493	.	-	2	Parent=Os06t0726600-02
Chr06	irgsp1_rep	CDS	30909133	30909221	.	-	0	Parent=Os06t0726600-02
Chr06	irgsp1_rep	CDS	30908259	30908520	.	-	1	Parent=Os06t0726600-02
Chr06	irgsp1_rep	CDS	30907883	30908134	.	-	0	Parent=Os06t0726600-02
Chr06	irgsp1_rep	CDS	30907699	30907791	.	-	0	Parent=Os06t0726600-02
Chr06	irgsp1_rep	mRNA	30907000	30913463	.	-	.	ID=Os06t0726600-03;Name=Os06t0726600-03;Locus_id=Os06g0726600;Oryzabase Gene Symbol Synonym(s)=OsMac1;Oryzabase Gene Name Synonym(s)=MAP-kinase activating protein 1;Note=Protein of unknown function DUF300 family protein.;Transcript_evidence=AK111844 (DDBJ%2C Best hit);ORF_evidence=Q01J99 (UniProt);InterPro=Protein of unknown function DUF300 (IPR005178);NIAS_FLcDNA=J023135N14;Oryzabase=11546;Expression=AK111844;TENOR=Os06t0726600-03;KEGG=Os06t0726600-03
Chr06	irgsp1_rep	five_prime_UTR	30913212	30913463	.	-	.	Parent=Os06t0726600-03
Chr06	irgsp1_rep	five_prime_UTR	30912803	30912872	.	-	.	Parent=Os06t0726600-03
Chr06	irgsp1_rep	five_prime_UTR	30910098	30910300	.	-	.	Parent=Os06t0726600-03
Chr06	irgsp1_rep	CDS	30909948	30910097	.	-	0	Parent=Os06t0726600-03
Chr06	irgsp1_rep	CDS	30909787	30909843	.	-	0	Parent=Os06t0726600-03
Chr06	irgsp1_rep	CDS	30909574	30909682	.	-	0	Parent=Os06t0726600-03
Chr06	irgsp1_rep	CDS	30909309	30909493	.	-	2	Parent=Os06t0726600-03
Chr06	irgsp1_rep	CDS	30909133	30909221	.	-	0	Parent=Os06t0726600-03
Chr06	irgsp1_rep	CDS	30908259	30908520	.	-	1	Parent=Os06t0726600-03
Chr06	irgsp1_rep	CDS	30907883	30908134	.	-	0	Parent=Os06t0726600-03
Chr06	irgsp1_rep	CDS	30907456	30907791	.	-	0	Parent=Os06t0726600-03
Chr06	irgsp1_rep	three_prime_UTR	30907000	30907455	.	-	.	Parent=Os06t0726600-03
Chr06	irgsp1_rep	mRNA	30915125	30918862	.	-	.	ID=Os06t0726800-01;Name=Os06t0726800-01;Locus_id=Os06g0726800;CGSNL Gene Symbol=CYCB2%3B2;CGSNL Gene Name=CYCLIN-B2-2;Oryzabase Gene Symbol Synonym(s)=cycB2%3B2 (%3DcycOs2)%2C cycB2%3B2%2C cycOs2%2C CycB2%3B2%2C CycOs2%2C CYCB2-2%2C CYCOS2%2C CycB2-Os2%2C CYCB2%2C CycB2%3Bos%3B2%2C OsCycB2%3B2%2C Orysa%3BCycB2%3B2%2C OsCYCOS2%2C Os%3BcycB2%3B2%2C CYCB2.2%2C OsCYCB2.2;Oryzabase Gene Name Synonym(s)=Cyclin-B2-2%2C G2/mitotic-specific cyclin-B2-2%2C B-type cyclin 2%3B2%2C cyclin Oryza sativa2;Note=G2/mitotic-specific cyclin 2 (B-like cyclin) (CycOs2).;Transcript_evidence=AK070518 (DDBJ%2C Best hit);ORF_evidence=Q0D9C7 (UniProt);GO=Biological Process: regulation of cyclin-dependent protein kinase activity (GO:0000079),Biological Process: regulation of cell cycle (GO:0051726),Cellular Component: nucleus (GO:0005634),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin%2C C-terminal (IPR004367),Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763),Cyclin A/B/D/E (IPR014400);NIAS_FLcDNA=J023055K12;Oryzabase=6028;Expression=AK070518;TENOR=Os06t0726800-01;KEGG=Os06t0726800-01
Chr06	irgsp1_rep	five_prime_UTR	30918712	30918862	.	-	.	Parent=Os06t0726800-01
Chr06	irgsp1_rep	five_prime_UTR	30917974	30917986	.	-	.	Parent=Os06t0726800-01
Chr06	irgsp1_rep	CDS	30917940	30917973	.	-	0	Parent=Os06t0726800-01
Chr06	irgsp1_rep	CDS	30917727	30917856	.	-	2	Parent=Os06t0726800-01
Chr06	irgsp1_rep	CDS	30917593	30917637	.	-	1	Parent=Os06t0726800-01
Chr06	irgsp1_rep	CDS	30917470	30917515	.	-	1	Parent=Os06t0726800-01
Chr06	irgsp1_rep	CDS	30916878	30917006	.	-	0	Parent=Os06t0726800-01
Chr06	irgsp1_rep	CDS	30916645	30916782	.	-	0	Parent=Os06t0726800-01
Chr06	irgsp1_rep	CDS	30916473	30916563	.	-	0	Parent=Os06t0726800-01
Chr06	irgsp1_rep	CDS	30916177	30916397	.	-	2	Parent=Os06t0726800-01
Chr06	irgsp1_rep	CDS	30915995	30916093	.	-	0	Parent=Os06t0726800-01
Chr06	irgsp1_rep	CDS	30915719	30915897	.	-	0	Parent=Os06t0726800-01
Chr06	irgsp1_rep	CDS	30915476	30915623	.	-	1	Parent=Os06t0726800-01
Chr06	irgsp1_rep	three_prime_UTR	30915125	30915475	.	-	.	Parent=Os06t0726800-01
Chr06	irgsp1_rep	mRNA	30924234	30926165	.	-	.	ID=Os06t0726850-00;Name=Os06t0726850-00;Locus_id=Os06g0726850;Note=Hypothetical protein.;Transcript_evidence=tplb0024f08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0726850-00
Chr06	irgsp1_rep	five_prime_UTR	30926082	30926165	.	-	.	Parent=Os06t0726850-00
Chr06	irgsp1_rep	CDS	30925138	30926081	.	-	0	Parent=Os06t0726850-00
Chr06	irgsp1_rep	CDS	30924496	30925054	.	-	1	Parent=Os06t0726850-00
Chr06	irgsp1_rep	three_prime_UTR	30924234	30924495	.	-	.	Parent=Os06t0726850-00
Chr06	irgsp1_rep	mRNA	30925122	30930159	.	+	.	ID=Os06t0726900-00;Name=Os06t0726900-00;Locus_id=Os06g0726900;Oryzabase Gene Symbol Synonym(s)=OsPUB13%2C OsSTA182;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 13%2C U-box protein 13;Note=Armadillo domain containing protein.;Transcript_evidence=AK364090 (DDBJ);ORF_evidence=NP_001058633.2 (RefSeq);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),U box domain (IPR003613),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);Oryzabase=17805;TENOR=Os06t0726900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	30925122	30925946	.	+	0	Parent=Os06t0726900-00
Chr06	irgsp1_rep	CDS	30929842	30930159	.	+	0	Parent=Os06t0726900-00
Chr06	irgsp1_rep	mRNA	30935754	30936612	.	-	.	ID=Os06t0727000-01;Name=Os06t0727000-01;Locus_id=Os06g0727000;CGSNL Gene Symbol=DLN177;CGSNL Gene Name=DLN REPRESSOR 177;Oryzabase Gene Symbol Synonym(s)=OsDLN177;Oryzabase Gene Name Synonym(s)=DLN repressor 177%2C DLN motif protein 177;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK108097 (DDBJ%2C Best hit);ORF_evidence=A2YH63 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880),Zinc finger%2C double-stranded RNA binding (IPR022755);NIAS_FLcDNA=002-139-A09;Oryzabase=23213;Expression=AK108097;TENOR=Os06t0727000-01;KEGG=Os06t0727000-01
Chr06	irgsp1_rep	five_prime_UTR	30936553	30936612	.	-	.	Parent=Os06t0727000-01
Chr06	irgsp1_rep	CDS	30935998	30936552	.	-	0	Parent=Os06t0727000-01
Chr06	irgsp1_rep	three_prime_UTR	30935754	30935997	.	-	.	Parent=Os06t0727000-01
Chr06	irgsp1_rep	mRNA	30944198	30948067	.	+	.	ID=Os06t0727200-01;Name=Os06t0727200-01;Locus_id=Os06g0727200;CGSNL Gene Symbol=CATB;CGSNL Gene Name=CATALASE B;Oryzabase Gene Symbol Synonym(s)=CatB%2C CAT-B%2C OsCatB%2C OsCATB%2C OsCAT1B%2C CAT1B%2C CAT2%2C OsCAT2;Oryzabase Gene Name Synonym(s)=Catalase B%2C Catalase isozyme B;Note=Catalase isozyme B (EC 1.11.1.6) (CAT-B).;Transcript_evidence=AK100019 (DDBJ%2C Best hit);ORF_evidence=Q0D9C4 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalase activity (GO:0004096),Molecular Function: heme binding (GO:0020037);InterPro=Catalase haem-binding site (IPR002226),Catalase-related immune responsive (IPR010582),Catalase%2C N-terminal (IPR011614),Catalase%2C mono-functional%2C haem-containing (IPR018028),Catalase domain (IPR020835),Catalase active site (IPR024708);NIAS_FLcDNA=J013145C05;Oryzabase=7111;Expression=AK100019;TENOR=Os06t0727200-01;KEGG=Os06t0727200-01 (EC:1.11.1.6)
Chr06	irgsp1_rep	five_prime_UTR	30944198	30944388	.	+	.	Parent=Os06t0727200-01
Chr06	irgsp1_rep	CDS	30944389	30944403	.	+	0	Parent=Os06t0727200-01
Chr06	irgsp1_rep	CDS	30944520	30944616	.	+	0	Parent=Os06t0727200-01
Chr06	irgsp1_rep	CDS	30945528	30945805	.	+	2	Parent=Os06t0727200-01
Chr06	irgsp1_rep	CDS	30946157	30946933	.	+	0	Parent=Os06t0727200-01
Chr06	irgsp1_rep	CDS	30947155	30947244	.	+	0	Parent=Os06t0727200-01
Chr06	irgsp1_rep	CDS	30947439	30947506	.	+	0	Parent=Os06t0727200-01
Chr06	irgsp1_rep	CDS	30947597	30947690	.	+	1	Parent=Os06t0727200-01
Chr06	irgsp1_rep	CDS	30947803	30947862	.	+	0	Parent=Os06t0727200-01
Chr06	irgsp1_rep	three_prime_UTR	30947863	30948067	.	+	.	Parent=Os06t0727200-01
Chr06	irgsp1_rep	mRNA	30944285	30948176	.	+	.	ID=Os06t0727200-02;Name=Os06t0727200-02;Locus_id=Os06g0727200;CGSNL Gene Symbol=CATB;CGSNL Gene Name=CATALASE B;Oryzabase Gene Symbol Synonym(s)=CatB%2C CAT-B%2C OsCatB%2C OsCATB%2C OsCAT1B%2C CAT1B%2C CAT2%2C OsCAT2;Oryzabase Gene Name Synonym(s)=Catalase B%2C Catalase isozyme B;Note=Catalase isozyme B (EC 1.11.1.6) (CAT-B).;Transcript_evidence=AK069446 (DDBJ%2C Best hit);ORF_evidence=Q0D9C4 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalase activity (GO:0004096),Molecular Function: heme binding (GO:0020037);InterPro=Catalase haem-binding site (IPR002226),Catalase-related immune responsive (IPR010582),Catalase%2C N-terminal (IPR011614),Catalase%2C mono-functional%2C haem-containing (IPR018028),Catalase domain (IPR020835),Catalase active site (IPR024708);NIAS_FLcDNA=J023019H14;Oryzabase=7111;Expression=AK069446;TENOR=Os06t0727200-02;KEGG=Os06t0727200-02 (EC:1.11.1.6)
Chr06	irgsp1_rep	five_prime_UTR	30944285	30944388	.	+	.	Parent=Os06t0727200-02
Chr06	irgsp1_rep	CDS	30944389	30944403	.	+	0	Parent=Os06t0727200-02
Chr06	irgsp1_rep	CDS	30944520	30944616	.	+	0	Parent=Os06t0727200-02
Chr06	irgsp1_rep	CDS	30945528	30945805	.	+	2	Parent=Os06t0727200-02
Chr06	irgsp1_rep	CDS	30946157	30946933	.	+	0	Parent=Os06t0727200-02
Chr06	irgsp1_rep	CDS	30947155	30947244	.	+	0	Parent=Os06t0727200-02
Chr06	irgsp1_rep	CDS	30947439	30947506	.	+	0	Parent=Os06t0727200-02
Chr06	irgsp1_rep	CDS	30947597	30947690	.	+	1	Parent=Os06t0727200-02
Chr06	irgsp1_rep	CDS	30947803	30947862	.	+	0	Parent=Os06t0727200-02
Chr06	irgsp1_rep	three_prime_UTR	30947863	30948176	.	+	.	Parent=Os06t0727200-02
Chr06	irgsp1_rep	mRNA	30948592	30950414	.	-	.	ID=Os06t0727300-00;Name=Os06t0727300-00;Locus_id=Os06g0727300;CGSNL Gene Symbol=GAUT5;CGSNL Gene Name=GALACTURONOSYLTRANSFERASE 5;Oryzabase Gene Symbol Synonym(s)=OsGAUT5;Oryzabase Gene Name Synonym(s)=galacturonosyltransferase 5;Note=Similar to glycosyltransferase%2C family GT8.;Transcript_evidence=BT033544 (DDBJ);ORF_evidence=XP_002328269.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 8 (IPR002495);Oryzabase=23267;TENOR=Os06t0727300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	30950152	30950414	.	-	0	Parent=Os06t0727300-00
Chr06	irgsp1_rep	CDS	30949052	30950024	.	-	1	Parent=Os06t0727300-00
Chr06	irgsp1_rep	CDS	30948619	30948897	.	-	0	Parent=Os06t0727300-00
Chr06	irgsp1_rep	three_prime_UTR	30948592	30948618	.	-	.	Parent=Os06t0727300-00
Chr06	irgsp1_rep	mRNA	30953101	30956664	.	-	.	ID=Os06t0727400-01;Name=Os06t0727400-01;Locus_id=Os06g0727400;CGSNL Gene Symbol=RLCK220;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 220;Oryzabase Gene Symbol Synonym(s)=OsRLCK220;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 220;Note=Similar to Protein kinase APK1A%2C chloroplast precursor (EC 2.7.1.-).;Transcript_evidence=AK069558 (DDBJ%2C Best hit);ORF_evidence=NP_001147720.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023021O21;Oryzabase=18915;Expression=AK069558;TENOR=Os06t0727400-01;KEGG=Os06t0727400-01
Chr06	irgsp1_rep	five_prime_UTR	30956444	30956664	.	-	.	Parent=Os06t0727400-01
Chr06	irgsp1_rep	CDS	30956359	30956443	.	-	0	Parent=Os06t0727400-01
Chr06	irgsp1_rep	CDS	30955370	30955719	.	-	2	Parent=Os06t0727400-01
Chr06	irgsp1_rep	CDS	30954693	30954828	.	-	0	Parent=Os06t0727400-01
Chr06	irgsp1_rep	CDS	30954145	30954287	.	-	2	Parent=Os06t0727400-01
Chr06	irgsp1_rep	CDS	30953915	30954038	.	-	0	Parent=Os06t0727400-01
Chr06	irgsp1_rep	CDS	30953397	30953803	.	-	2	Parent=Os06t0727400-01
Chr06	irgsp1_rep	three_prime_UTR	30953101	30953396	.	-	.	Parent=Os06t0727400-01
Chr06	irgsp1_rep	mRNA	30953213	30955721	.	+	.	ID=Os06t0727500-00;Name=Os06t0727500-00;Locus_id=Os06g0727500;Note=Hypothetical protein.;Transcript_evidence=tplb0023d22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0727500-00
Chr06	irgsp1_rep	five_prime_UTR	30953213	30955312	.	+	.	Parent=Os06t0727500-00
Chr06	irgsp1_rep	CDS	30955313	30955669	.	+	0	Parent=Os06t0727500-00
Chr06	irgsp1_rep	three_prime_UTR	30955670	30955721	.	+	.	Parent=Os06t0727500-00
Chr06	irgsp1_rep	mRNA	30957478	30962699	.	+	.	ID=Os06t0727600-00;Name=Os06t0727600-00;Locus_id=Os06g0727600;Note=Similar to Lysine ketoglutarate reductase trans-splicing related 1.;Transcript_evidence=ab initio prediction;ORF_evidence=B6TPP1 (UniProt);InterPro=Protein of unknown function DUF707 (IPR007877);TENOR=Os06t0727600-00
Chr06	irgsp1_rep	CDS	30957478	30957659	.	+	0	Parent=Os06t0727600-00
Chr06	irgsp1_rep	CDS	30961388	30961505	.	+	1	Parent=Os06t0727600-00
Chr06	irgsp1_rep	CDS	30961646	30961780	.	+	0	Parent=Os06t0727600-00
Chr06	irgsp1_rep	CDS	30961915	30961998	.	+	0	Parent=Os06t0727600-00
Chr06	irgsp1_rep	CDS	30962108	30962223	.	+	0	Parent=Os06t0727600-00
Chr06	irgsp1_rep	CDS	30962357	30962699	.	+	1	Parent=Os06t0727600-00
Chr06	irgsp1_rep	mRNA	30967319	30973486	.	+	.	ID=Os06t0727700-01;Name=Os06t0727700-01;Locus_id=Os06g0727700;Note=Protein of unknown function DUF707 family protein.;Transcript_evidence=AK110259 (DDBJ%2C Best hit);ORF_evidence=B8B2L8 (UniProt);InterPro=Protein of unknown function DUF707 (IPR007877);NIAS_FLcDNA=002-163-A12;Expression=AK110259;TENOR=Os06t0727700-01;KEGG=Os06t0727700-01
Chr06	irgsp1_rep	five_prime_UTR	30967319	30967487	.	+	.	Parent=Os06t0727700-01
Chr06	irgsp1_rep	CDS	30967488	30967580	.	+	0	Parent=Os06t0727700-01
Chr06	irgsp1_rep	CDS	30967776	30967919	.	+	0	Parent=Os06t0727700-01
Chr06	irgsp1_rep	CDS	30968171	30968296	.	+	0	Parent=Os06t0727700-01
Chr06	irgsp1_rep	CDS	30969859	30969942	.	+	0	Parent=Os06t0727700-01
Chr06	irgsp1_rep	CDS	30970023	30970138	.	+	0	Parent=Os06t0727700-01
Chr06	irgsp1_rep	CDS	30970253	30970549	.	+	1	Parent=Os06t0727700-01
Chr06	irgsp1_rep	CDS	30970677	30970731	.	+	1	Parent=Os06t0727700-01
Chr06	irgsp1_rep	CDS	30970873	30970947	.	+	0	Parent=Os06t0727700-01
Chr06	irgsp1_rep	CDS	30971053	30971085	.	+	0	Parent=Os06t0727700-01
Chr06	irgsp1_rep	CDS	30972852	30972959	.	+	0	Parent=Os06t0727700-01
Chr06	irgsp1_rep	three_prime_UTR	30972960	30973486	.	+	.	Parent=Os06t0727700-01
Chr06	irgsp1_rep	mRNA	30976066	30981070	.	+	.	ID=Os06t0727800-00;Name=Os06t0727800-00;Locus_id=Os06g0727800;Note=Similar to predicted protein.;Transcript_evidence=CT837916 (DDBJ%2C Best hit);ORF_evidence=B4FSQ8 (UniProt);InterPro=Protein of unknown function DUF707 (IPR007877);TENOR=Os06t0727800-00;KEGG=Os06t0727800-00
Chr06	irgsp1_rep	five_prime_UTR	30976066	30976221	.	+	.	Parent=Os06t0727800-00
Chr06	irgsp1_rep	five_prime_UTR	30977711	30977805	.	+	.	Parent=Os06t0727800-00
Chr06	irgsp1_rep	five_prime_UTR	30977898	30977909	.	+	.	Parent=Os06t0727800-00
Chr06	irgsp1_rep	CDS	30977910	30977999	.	+	0	Parent=Os06t0727800-00
Chr06	irgsp1_rep	CDS	30978113	30978241	.	+	0	Parent=Os06t0727800-00
Chr06	irgsp1_rep	CDS	30978317	30978421	.	+	0	Parent=Os06t0727800-00
Chr06	irgsp1_rep	CDS	30978527	30978607	.	+	0	Parent=Os06t0727800-00
Chr06	irgsp1_rep	CDS	30978786	30978901	.	+	0	Parent=Os06t0727800-00
Chr06	irgsp1_rep	CDS	30978984	30979085	.	+	1	Parent=Os06t0727800-00
Chr06	irgsp1_rep	CDS	30979199	30979318	.	+	1	Parent=Os06t0727800-00
Chr06	irgsp1_rep	CDS	30979438	30979488	.	+	1	Parent=Os06t0727800-00
Chr06	irgsp1_rep	CDS	30979579	30979642	.	+	1	Parent=Os06t0727800-00
Chr06	irgsp1_rep	CDS	30979744	30979800	.	+	0	Parent=Os06t0727800-00
Chr06	irgsp1_rep	CDS	30979902	30979976	.	+	0	Parent=Os06t0727800-00
Chr06	irgsp1_rep	CDS	30980088	30980120	.	+	0	Parent=Os06t0727800-00
Chr06	irgsp1_rep	CDS	30980588	30980695	.	+	0	Parent=Os06t0727800-00
Chr06	irgsp1_rep	three_prime_UTR	30980696	30981070	.	+	.	Parent=Os06t0727800-00
Chr06	irgsp1_rep	mRNA	30982225	30988361	.	+	.	ID=Os06t0727900-00;Name=Os06t0727900-00;Locus_id=Os06g0727900;Note=Domain of unknown function DUF23 domain containing protein.;Transcript_evidence=AK367647 (DDBJ);ORF_evidence=NP_001058639.2 (RefSeq);InterPro=Domain of unknown function DUF23 (IPR008166);TENOR=Os06t0727900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	30982225	30982646	.	+	0	Parent=Os06t0727900-00
Chr06	irgsp1_rep	CDS	30986765	30988361	.	+	1	Parent=Os06t0727900-00
Chr06	irgsp1_rep	mRNA	30982390	30988326	.	-	.	ID=Os06t0727950-00;Name=Os06t0727950-00;Locus_id=Os06g0727950;Note=Hypothetical protein.;Transcript_evidence=tplb0040b23 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0727950-00
Chr06	irgsp1_rep	five_prime_UTR	30987159	30988326	.	-	.	Parent=Os06t0727950-00
Chr06	irgsp1_rep	CDS	30986807	30987158	.	-	0	Parent=Os06t0727950-00
Chr06	irgsp1_rep	CDS	30982581	30982606	.	-	2	Parent=Os06t0727950-00
Chr06	irgsp1_rep	three_prime_UTR	30982390	30982580	.	-	.	Parent=Os06t0727950-00
Chr06	irgsp1_rep	mRNA	30993280	30995120	.	+	.	ID=Os06t0728000-01;Name=Os06t0728000-01;Locus_id=Os06g0728000;Oryzabase Gene Symbol Synonym(s)=HMGB1%2C OsHMGB1;Oryzabase Gene Name Synonym(s)=High mobility group protein B1%2C High mobility group subgroup B protein 1%2C high mobility group B1;Note=HMG1 protein (HMGB1).;Transcript_evidence=AK062226 (DDBJ%2C Best hit);ORF_evidence=Q9ZSU6 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=High mobility group%2C HMG1/HMG2 (IPR000910),High mobility group%2C superfamily (IPR009071);NIAS_FLcDNA=001-047-C12;Oryzabase=14525;Expression=AK062226;TENOR=Os06t0728000-01;KEGG=Os06t0728000-01
Chr06	irgsp1_rep	five_prime_UTR	30993280	30993417	.	+	.	Parent=Os06t0728000-01
Chr06	irgsp1_rep	five_prime_UTR	30993507	30993515	.	+	.	Parent=Os06t0728000-01
Chr06	irgsp1_rep	CDS	30993516	30993559	.	+	0	Parent=Os06t0728000-01
Chr06	irgsp1_rep	CDS	30993679	30993792	.	+	1	Parent=Os06t0728000-01
Chr06	irgsp1_rep	CDS	30993872	30993929	.	+	1	Parent=Os06t0728000-01
Chr06	irgsp1_rep	CDS	30994087	30994131	.	+	0	Parent=Os06t0728000-01
Chr06	irgsp1_rep	CDS	30994231	30994311	.	+	0	Parent=Os06t0728000-01
Chr06	irgsp1_rep	CDS	30994399	30994509	.	+	0	Parent=Os06t0728000-01
Chr06	irgsp1_rep	CDS	30994808	30994828	.	+	0	Parent=Os06t0728000-01
Chr06	irgsp1_rep	three_prime_UTR	30994829	30995120	.	+	.	Parent=Os06t0728000-01
Chr06	irgsp1_rep	mRNA	30993285	30995120	.	+	.	ID=Os06t0728000-02;Name=Os06t0728000-02;Locus_id=Os06g0728000;Oryzabase Gene Symbol Synonym(s)=HMGB1%2C OsHMGB1;Oryzabase Gene Name Synonym(s)=High mobility group protein B1%2C High mobility group subgroup B protein 1%2C high mobility group B1;Note=HMG1 protein (HMGB1).;Transcript_evidence=AK068898 (DDBJ%2C Best hit);ORF_evidence=Q9ZSU6 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=High mobility group%2C HMG1/HMG2 (IPR000910),High mobility group%2C superfamily (IPR009071);NIAS_FLcDNA=J013170E23;Oryzabase=14525;Expression=AK068898;TENOR=Os06t0728000-02;KEGG=Os06t0728000-02
Chr06	irgsp1_rep	five_prime_UTR	30993285	30993515	.	+	.	Parent=Os06t0728000-02
Chr06	irgsp1_rep	CDS	30993516	30993559	.	+	0	Parent=Os06t0728000-02
Chr06	irgsp1_rep	CDS	30993679	30993792	.	+	1	Parent=Os06t0728000-02
Chr06	irgsp1_rep	CDS	30993872	30993929	.	+	1	Parent=Os06t0728000-02
Chr06	irgsp1_rep	CDS	30994087	30994131	.	+	0	Parent=Os06t0728000-02
Chr06	irgsp1_rep	CDS	30994231	30994311	.	+	0	Parent=Os06t0728000-02
Chr06	irgsp1_rep	CDS	30994399	30994509	.	+	0	Parent=Os06t0728000-02
Chr06	irgsp1_rep	CDS	30994808	30994828	.	+	0	Parent=Os06t0728000-02
Chr06	irgsp1_rep	three_prime_UTR	30994829	30995120	.	+	.	Parent=Os06t0728000-02
Chr06	irgsp1_rep	mRNA	31000937	31003884	.	+	.	ID=Os06t0728200-00;Name=Os06t0728200-00;Locus_id=Os06g0728200;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001058641.2 (RefSeq);TENOR=Os06t0728200-00;KEGG=Os06t0728200-00
Chr06	irgsp1_rep	CDS	31000937	31001035	.	+	0	Parent=Os06t0728200-00
Chr06	irgsp1_rep	CDS	31001140	31002852	.	+	0	Parent=Os06t0728200-00
Chr06	irgsp1_rep	CDS	31002961	31003060	.	+	0	Parent=Os06t0728200-00
Chr06	irgsp1_rep	CDS	31003156	31003592	.	+	2	Parent=Os06t0728200-00
Chr06	irgsp1_rep	CDS	31003678	31003884	.	+	0	Parent=Os06t0728200-00
Chr06	irgsp1_rep	mRNA	31002866	31005488	.	-	.	ID=Os06t0728300-01;Name=Os06t0728300-01;Locus_id=Os06g0728300;Note=Hypothetical gene.;Transcript_evidence=AK100681 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023113K09;Expression=AK100681;TENOR=Os06t0728300-01;KEGG=Os06t0728300-01
Chr06	irgsp1_rep	five_prime_UTR	31005407	31005488	.	-	.	Parent=Os06t0728300-01
Chr06	irgsp1_rep	CDS	31005089	31005406	.	-	0	Parent=Os06t0728300-01
Chr06	irgsp1_rep	three_prime_UTR	31002866	31005088	.	-	.	Parent=Os06t0728300-01
Chr06	irgsp1_rep	mRNA	31001622	31005456	.	-	.	ID=Os06t0728300-02;Name=Os06t0728300-02;Locus_id=Os06g0728300;Note=Hypothetical protein.;Transcript_evidence=AK119303 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-130-F04;Expression=AK119303;TENOR=Os06t0728300-02;KEGG=Os06t0728300-02
Chr06	irgsp1_rep	five_prime_UTR	31005140	31005456	.	-	.	Parent=Os06t0728300-02
Chr06	irgsp1_rep	five_prime_UTR	31004069	31004158	.	-	.	Parent=Os06t0728300-02
Chr06	irgsp1_rep	five_prime_UTR	31002147	31003908	.	-	.	Parent=Os06t0728300-02
Chr06	irgsp1_rep	CDS	31001691	31002146	.	-	0	Parent=Os06t0728300-02
Chr06	irgsp1_rep	three_prime_UTR	31001622	31001690	.	-	.	Parent=Os06t0728300-02
Chr06	irgsp1_rep	mRNA	31008125	31009853	.	+	.	ID=Os06t0728500-01;Name=Os06t0728500-01;Locus_id=Os06g0728500;Note=Conserved hypothetical protein.;Transcript_evidence=AK073799 (DDBJ%2C Best hit),AK099928 (DDBJ%2C Best hit);ORF_evidence=B8B2Y3 (UniProt);NIAS_FLcDNA=J033068A13,J013118C12;TENOR=Os06t0728500-01
Chr06	irgsp1_rep	five_prime_UTR	31008125	31008188	.	+	.	Parent=Os06t0728500-01
Chr06	irgsp1_rep	five_prime_UTR	31008322	31008539	.	+	.	Parent=Os06t0728500-01
Chr06	irgsp1_rep	CDS	31008540	31009661	.	+	0	Parent=Os06t0728500-01
Chr06	irgsp1_rep	three_prime_UTR	31009662	31009853	.	+	.	Parent=Os06t0728500-01
Chr06	irgsp1_rep	mRNA	31015205	31016171	.	-	.	ID=Os06t0728550-01;Name=Os06t0728550-01;Locus_id=Os06g0728550;Note=Non-protein coding transcript.;Transcript_evidence=AK288242 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090013M17;TENOR=Os06t0728550-01
Chr06	irgsp1_rep	exon	31015205	31016171	.	-	.	Parent=Os06t0728550-01
Chr06	irgsp1_rep	mRNA	31013746	31021183	.	+	.	ID=Os06t0728600-00;Name=Os06t0728600-00;Locus_id=Os06g0728600;Note=EPS15 homology (EH) domain containing protein.;Transcript_evidence=AK376429 (DDBJ);ORF_evidence=NP_001058644.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515);InterPro=EPS15 homology (EH) (IPR000261),Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249);TENOR=Os06t0728600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	31013746	31013880	.	+	.	Parent=Os06t0728600-00
Chr06	irgsp1_rep	CDS	31013881	31014003	.	+	0	Parent=Os06t0728600-00
Chr06	irgsp1_rep	CDS	31014935	31016057	.	+	0	Parent=Os06t0728600-00
Chr06	irgsp1_rep	CDS	31016815	31017033	.	+	2	Parent=Os06t0728600-00
Chr06	irgsp1_rep	CDS	31017129	31017355	.	+	2	Parent=Os06t0728600-00
Chr06	irgsp1_rep	CDS	31017711	31017785	.	+	0	Parent=Os06t0728600-00
Chr06	irgsp1_rep	CDS	31018151	31018222	.	+	0	Parent=Os06t0728600-00
Chr06	irgsp1_rep	CDS	31018666	31018764	.	+	0	Parent=Os06t0728600-00
Chr06	irgsp1_rep	CDS	31018876	31018947	.	+	0	Parent=Os06t0728600-00
Chr06	irgsp1_rep	CDS	31019032	31019146	.	+	0	Parent=Os06t0728600-00
Chr06	irgsp1_rep	CDS	31019356	31019424	.	+	2	Parent=Os06t0728600-00
Chr06	irgsp1_rep	CDS	31019526	31019853	.	+	2	Parent=Os06t0728600-00
Chr06	irgsp1_rep	CDS	31020221	31020383	.	+	1	Parent=Os06t0728600-00
Chr06	irgsp1_rep	three_prime_UTR	31020384	31021183	.	+	.	Parent=Os06t0728600-00
Chr06	irgsp1_rep	mRNA	31025972	31028984	.	-	.	ID=Os06t0728700-01;Name=Os06t0728700-01;Locus_id=Os06g0728700;CGSNL Gene Symbol=EPR1;CGSNL Gene Name=EARLY PHYTOCHROME RESPONSIVE 1;Oryzabase Gene Symbol Synonym(s)=OsEPR1;Oryzabase Gene Name Synonym(s)=MYB transcription factor%2C OsLHY-like_Chr.6%2C EARLY PHYTOCHROME RESPONSIVE1%2C EARLY PHYTOCHROME RESPONSIVE 1;Note=Homeodomain-like containing protein.;Transcript_evidence=AK119632 (DDBJ%2C Best hit),AK111637 (DDBJ%2C Best hit);ORF_evidence=B5AEI9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=002-130-E11,J013123B09;Oryzabase=9685;Expression=AK119632;TENOR=Os06t0728700-01;KEGG=Os06t0728700-01
Chr06	irgsp1_rep	five_prime_UTR	31028713	31028984	.	-	.	Parent=Os06t0728700-01
Chr06	irgsp1_rep	CDS	31028689	31028712	.	-	0	Parent=Os06t0728700-01
Chr06	irgsp1_rep	CDS	31027975	31028112	.	-	0	Parent=Os06t0728700-01
Chr06	irgsp1_rep	CDS	31027727	31027838	.	-	0	Parent=Os06t0728700-01
Chr06	irgsp1_rep	CDS	31027561	31027622	.	-	2	Parent=Os06t0728700-01
Chr06	irgsp1_rep	CDS	31027020	31027385	.	-	0	Parent=Os06t0728700-01
Chr06	irgsp1_rep	CDS	31026274	31026927	.	-	0	Parent=Os06t0728700-01
Chr06	irgsp1_rep	three_prime_UTR	31025972	31026273	.	-	.	Parent=Os06t0728700-01
Chr06	irgsp1_rep	mRNA	31033456	31034904	.	-	.	ID=Os06t0728800-01;Name=Os06t0728800-01;Locus_id=Os06g0728800;CGSNL Gene Symbol=GSL6;CGSNL Gene Name=BETA-1%2C3-GLUCANASE ACTIVITY 6;Oryzabase Gene Symbol Synonym(s)=OsGSL6;Oryzabase Gene Name Synonym(s)=Oryza sativa callose synthase 6%2C callose synthase 6;Note=Similar to predicted protein.;Transcript_evidence=AK242486 (DDBJ%2C Best hit);ORF_evidence=C6GFB2 (UniProt);GO=Biological Process: 1%2C3-beta-D-glucan biosynthetic process (GO:0006075),Cellular Component: 1%2C3-beta-D-glucan synthase complex (GO:0000148),Cellular Component: membrane (GO:0016020),Molecular Function: 1%2C3-beta-D-glucan synthase activity (GO:0003843);InterPro=Glycosyl transferase%2C family 48 (IPR003440);NIAS_FLcDNA=J080306G22;Oryzabase=8541;TENOR=Os06t0728800-01;KEGG=Os06t0728800-01 (EC:2.4.1.-)
Chr06	irgsp1_rep	five_prime_UTR	31034904	31034904	.	-	.	Parent=Os06t0728800-01
Chr06	irgsp1_rep	CDS	31034559	31034903	.	-	0	Parent=Os06t0728800-01
Chr06	irgsp1_rep	CDS	31034422	31034472	.	-	0	Parent=Os06t0728800-01
Chr06	irgsp1_rep	CDS	31034088	31034273	.	-	0	Parent=Os06t0728800-01
Chr06	irgsp1_rep	CDS	31033741	31033989	.	-	0	Parent=Os06t0728800-01
Chr06	irgsp1_rep	three_prime_UTR	31033456	31033740	.	-	.	Parent=Os06t0728800-01
Chr06	irgsp1_rep	mRNA	31047398	31048514	.	-	.	ID=Os06t0728902-01;Name=Os06t0728902-01;Locus_id=Os06g0728902;CGSNL Gene Symbol=GSL6;CGSNL Gene Name=BETA-1%2C3-GLUCANASE ACTIVITY 6;Oryzabase Gene Symbol Synonym(s)=OsGSL6;Oryzabase Gene Name Synonym(s)=Oryza sativa callose synthase 6%2C callose synthase 6;Note=Similar to predicted protein.;Transcript_evidence=AK240761 (DDBJ%2C Best hit);ORF_evidence=NP_001154712.1 (RefSeq);InterPro=Protein of unknown function DUF605 (IPR006745),Vacuolar protein sorting-associate Vta1%2C N-terminal (IPR023175);NIAS_FLcDNA=J053046C07;Oryzabase=8541;TENOR=Os06t0728902-01
Chr06	irgsp1_rep	five_prime_UTR	31048462	31048514	.	-	.	Parent=Os06t0728902-01
Chr06	irgsp1_rep	CDS	31048233	31048461	.	-	0	Parent=Os06t0728902-01
Chr06	irgsp1_rep	CDS	31048031	31048131	.	-	2	Parent=Os06t0728902-01
Chr06	irgsp1_rep	CDS	31047760	31047884	.	-	0	Parent=Os06t0728902-01
Chr06	irgsp1_rep	CDS	31047557	31047650	.	-	1	Parent=Os06t0728902-01
Chr06	irgsp1_rep	CDS	31047398	31047425	.	-	0	Parent=Os06t0728902-01
Chr06	irgsp1_rep	mRNA	31051983	31055919	.	-	.	ID=Os06t0729000-01;Name=Os06t0729000-01;Locus_id=Os06g0729000;CGSNL Gene Symbol=PSY1;CGSNL Gene Name=PHYTOENE SYNTHASE 1;Oryzabase Gene Symbol Synonym(s)=PSY1%2C OsPSY1;Oryzabase Gene Name Synonym(s)=phytoene synthase 1%2C PSY1-like gene;Note=Phytoene synthase 1 (EC 2.5.1.32).;Transcript_evidence=AK070716 (DDBJ%2C Best hit);ORF_evidence=Q6KBZ6 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: transferase activity (GO:0016740),Molecular Function: transferase activity%2C transferring alkyl or aryl (other than methyl) groups (GO:0016765);InterPro=Squalene/phytoene synthase (IPR002060),Terpenoid synthase (IPR008949),Squalene/phytoene synthase%2C conserved site (IPR019845);NIAS_FLcDNA=J023057D05;Oryzabase=8086;Expression=AK070716;TENOR=Os06t0729000-01;KEGG=Os06t0729000-01 (EC:2.5.1.32)
Chr06	irgsp1_rep	five_prime_UTR	31055700	31055919	.	-	.	Parent=Os06t0729000-01
Chr06	irgsp1_rep	five_prime_UTR	31055357	31055411	.	-	.	Parent=Os06t0729000-01
Chr06	irgsp1_rep	CDS	31054921	31055356	.	-	0	Parent=Os06t0729000-01
Chr06	irgsp1_rep	CDS	31054761	31054811	.	-	2	Parent=Os06t0729000-01
Chr06	irgsp1_rep	CDS	31053760	31053932	.	-	2	Parent=Os06t0729000-01
Chr06	irgsp1_rep	CDS	31052927	31053162	.	-	0	Parent=Os06t0729000-01
Chr06	irgsp1_rep	CDS	31052630	31052822	.	-	1	Parent=Os06t0729000-01
Chr06	irgsp1_rep	CDS	31052343	31052516	.	-	0	Parent=Os06t0729000-01
Chr06	irgsp1_rep	three_prime_UTR	31051983	31052342	.	-	.	Parent=Os06t0729000-01
Chr06	irgsp1_rep	mRNA	31052037	31055915	.	-	.	ID=Os06t0729000-02;Name=Os06t0729000-02;Locus_id=Os06g0729000;CGSNL Gene Symbol=PSY1;CGSNL Gene Name=PHYTOENE SYNTHASE 1;Oryzabase Gene Symbol Synonym(s)=PSY1%2C OsPSY1;Oryzabase Gene Name Synonym(s)=phytoene synthase 1%2C PSY1-like gene;Note=Similar to Phytoene synthase.;Transcript_evidence=AK067762 (DDBJ%2C Best hit);ORF_evidence=Q6KBZ6 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: transferase activity (GO:0016740),Molecular Function: transferase activity%2C transferring alkyl or aryl (other than methyl) groups (GO:0016765);InterPro=Squalene/phytoene synthase (IPR002060),Terpenoid synthase (IPR008949),Squalene/phytoene synthase%2C conserved site (IPR019845);NIAS_FLcDNA=J013116E15;Oryzabase=8086;Expression=AK067762;TENOR=Os06t0729000-02;KEGG=Os06t0729000-02 (EC:2.5.1.32)
Chr06	irgsp1_rep	five_prime_UTR	31055700	31055915	.	-	.	Parent=Os06t0729000-02
Chr06	irgsp1_rep	five_prime_UTR	31055357	31055411	.	-	.	Parent=Os06t0729000-02
Chr06	irgsp1_rep	CDS	31055208	31055356	.	-	0	Parent=Os06t0729000-02
Chr06	irgsp1_rep	CDS	31052927	31053121	.	-	1	Parent=Os06t0729000-02
Chr06	irgsp1_rep	CDS	31052630	31052822	.	-	1	Parent=Os06t0729000-02
Chr06	irgsp1_rep	CDS	31052343	31052516	.	-	0	Parent=Os06t0729000-02
Chr06	irgsp1_rep	three_prime_UTR	31052037	31052342	.	-	.	Parent=Os06t0729000-02
Chr06	irgsp1_rep	mRNA	31052007	31053116	.	-	.	ID=Os06t0729000-03;Name=Os06t0729000-03;Locus_id=Os06g0729000;CGSNL Gene Symbol=PSY1;CGSNL Gene Name=PHYTOENE SYNTHASE 1;Oryzabase Gene Symbol Synonym(s)=PSY1%2C OsPSY1;Oryzabase Gene Name Synonym(s)=phytoene synthase 1%2C PSY1-like gene;Note=Similar to Phytoene synthase.;Transcript_evidence=AK059535 (DDBJ%2C Best hit);ORF_evidence=A2YH75 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: transferase activity (GO:0016740),Molecular Function: transferase activity%2C transferring alkyl or aryl (other than methyl) groups (GO:0016765);InterPro=Squalene/phytoene synthase (IPR002060),Terpenoid synthase (IPR008949),Squalene/phytoene synthase%2C conserved site (IPR019845);NIAS_FLcDNA=001-029-E01;Oryzabase=8086;Expression=AK059535;TENOR=Os06t0729000-03;KEGG=Os06t0729000-03 (EC:2.5.1.32)
Chr06	irgsp1_rep	five_prime_UTR	31053115	31053116	.	-	.	Parent=Os06t0729000-03
Chr06	irgsp1_rep	CDS	31052927	31053114	.	-	0	Parent=Os06t0729000-03
Chr06	irgsp1_rep	CDS	31052612	31052822	.	-	1	Parent=Os06t0729000-03
Chr06	irgsp1_rep	three_prime_UTR	31052007	31052611	.	-	.	Parent=Os06t0729000-03
Chr06	irgsp1_rep	mRNA	31052625	31055269	.	+	.	ID=Os06t0729150-00;Name=Os06t0729150-00;Locus_id=Os06g0729150;Note=Hypothetical protein.;Transcript_evidence=tplb0026f23 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0729150-00
Chr06	irgsp1_rep	five_prime_UTR	31052625	31052840	.	+	.	Parent=Os06t0729150-00
Chr06	irgsp1_rep	five_prime_UTR	31052947	31053150	.	+	.	Parent=Os06t0729150-00
Chr06	irgsp1_rep	five_prime_UTR	31053752	31053948	.	+	.	Parent=Os06t0729150-00
Chr06	irgsp1_rep	five_prime_UTR	31054883	31054966	.	+	.	Parent=Os06t0729150-00
Chr06	irgsp1_rep	CDS	31054967	31055269	.	+	0	Parent=Os06t0729150-00
Chr06	irgsp1_rep	mRNA	31069076	31077365	.	+	.	ID=Os06t0729300-01;Name=Os06t0729300-01;Locus_id=Os06g0729300;CGSNL Gene Symbol=AGO1D;CGSNL Gene Name=ARGONAUTE 1D;Oryzabase Gene Symbol Synonym(s)=OsAGO1d%2C AGO1d;Oryzabase Gene Name Synonym(s)=Protein argonaute 1D;Note=Similar to AGO1 homologous protein.;Transcript_evidence=AK122176 (DDBJ%2C Best hit),AK111500 (DDBJ%2C Best hit);ORF_evidence=Q5Z5B2 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515);InterPro=Argonaute/Dicer protein%2C PAZ (IPR003100),Stem cell self-renewal protein Piwi (IPR003165),Ribonuclease H-like (IPR012337),Domain of unknown function DUF1785 (IPR014811);NIAS_FLcDNA=J033148L17,J013000K24;Oryzabase=8271;Expression=AK122176;TENOR=Os06t0729300-01;KEGG=Os06t0729300-01
Chr06	irgsp1_rep	five_prime_UTR	31069076	31069291	.	+	.	Parent=Os06t0729300-01
Chr06	irgsp1_rep	five_prime_UTR	31070877	31070897	.	+	.	Parent=Os06t0729300-01
Chr06	irgsp1_rep	CDS	31070898	31071509	.	+	0	Parent=Os06t0729300-01
Chr06	irgsp1_rep	CDS	31071608	31071816	.	+	0	Parent=Os06t0729300-01
Chr06	irgsp1_rep	CDS	31071907	31072056	.	+	1	Parent=Os06t0729300-01
Chr06	irgsp1_rep	CDS	31072155	31072288	.	+	1	Parent=Os06t0729300-01
Chr06	irgsp1_rep	CDS	31072753	31072862	.	+	2	Parent=Os06t0729300-01
Chr06	irgsp1_rep	CDS	31073117	31073223	.	+	0	Parent=Os06t0729300-01
Chr06	irgsp1_rep	CDS	31073344	31073482	.	+	1	Parent=Os06t0729300-01
Chr06	irgsp1_rep	CDS	31073606	31073722	.	+	0	Parent=Os06t0729300-01
Chr06	irgsp1_rep	CDS	31073819	31073926	.	+	0	Parent=Os06t0729300-01
Chr06	irgsp1_rep	CDS	31074122	31074193	.	+	0	Parent=Os06t0729300-01
Chr06	irgsp1_rep	CDS	31074430	31074551	.	+	0	Parent=Os06t0729300-01
Chr06	irgsp1_rep	CDS	31074683	31074849	.	+	1	Parent=Os06t0729300-01
Chr06	irgsp1_rep	CDS	31074945	31075066	.	+	2	Parent=Os06t0729300-01
Chr06	irgsp1_rep	CDS	31075146	31075283	.	+	0	Parent=Os06t0729300-01
Chr06	irgsp1_rep	CDS	31075363	31075505	.	+	0	Parent=Os06t0729300-01
Chr06	irgsp1_rep	CDS	31075600	31075662	.	+	1	Parent=Os06t0729300-01
Chr06	irgsp1_rep	CDS	31076008	31076071	.	+	1	Parent=Os06t0729300-01
Chr06	irgsp1_rep	CDS	31076139	31076274	.	+	0	Parent=Os06t0729300-01
Chr06	irgsp1_rep	CDS	31076379	31076452	.	+	2	Parent=Os06t0729300-01
Chr06	irgsp1_rep	CDS	31076541	31076635	.	+	0	Parent=Os06t0729300-01
Chr06	irgsp1_rep	CDS	31076730	31076761	.	+	1	Parent=Os06t0729300-01
Chr06	irgsp1_rep	CDS	31076874	31077076	.	+	2	Parent=Os06t0729300-01
Chr06	irgsp1_rep	three_prime_UTR	31077077	31077365	.	+	.	Parent=Os06t0729300-01
Chr06	irgsp1_rep	mRNA	31075664	31077365	.	+	.	ID=Os06t0729300-02;Name=Os06t0729300-02;Locus_id=Os06g0729300;CGSNL Gene Symbol=AGO1D;CGSNL Gene Name=ARGONAUTE 1D;Oryzabase Gene Symbol Synonym(s)=OsAGO1d%2C AGO1d;Oryzabase Gene Name Synonym(s)=Protein argonaute 1D;Note=Similar to Protein argonaute 1D.;Transcript_evidence=AK111833 (DDBJ%2C Best hit);ORF_evidence=Q5Z5B2 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515);InterPro=Stem cell self-renewal protein Piwi (IPR003165),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J023128K18;Oryzabase=8271;TENOR=Os06t0729300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	31075664	31076114	.	+	.	Parent=Os06t0729300-02
Chr06	irgsp1_rep	CDS	31076115	31076274	.	+	0	Parent=Os06t0729300-02
Chr06	irgsp1_rep	CDS	31076379	31076452	.	+	2	Parent=Os06t0729300-02
Chr06	irgsp1_rep	CDS	31076541	31076635	.	+	0	Parent=Os06t0729300-02
Chr06	irgsp1_rep	CDS	31076730	31076761	.	+	1	Parent=Os06t0729300-02
Chr06	irgsp1_rep	CDS	31076874	31077076	.	+	2	Parent=Os06t0729300-02
Chr06	irgsp1_rep	three_prime_UTR	31077077	31077365	.	+	.	Parent=Os06t0729300-02
Chr06	irgsp1_rep	mRNA	31076001	31077075	.	-	.	ID=Os06t0729350-00;Name=Os06t0729350-00;Locus_id=Os06g0729350;Note=Non-protein coding transcript.;Transcript_evidence=BT016774 (DDBJ);ORF_evidence=NONE;TENOR=Os06t0729350-00
Chr06	irgsp1_rep	exon	31076854	31077075	.	-	.	Parent=Os06t0729350-00
Chr06	irgsp1_rep	exon	31076525	31076645	.	-	.	Parent=Os06t0729350-00
Chr06	irgsp1_rep	exon	31076393	31076441	.	-	.	Parent=Os06t0729350-00
Chr06	irgsp1_rep	exon	31076152	31076286	.	-	.	Parent=Os06t0729350-00
Chr06	irgsp1_rep	exon	31076001	31076084	.	-	.	Parent=Os06t0729350-00
Chr06	irgsp1_rep	mRNA	31082752	31083640	.	+	.	ID=Os06t0729400-01;Name=Os06t0729400-01;Locus_id=Os06g0729400;Note=Similar to Gibberellin-regulated protein 2 precursor.;Transcript_evidence=AK059502 (DDBJ%2C Best hit);ORF_evidence=NP_001152731.1 (RefSeq);InterPro=Gibberellin regulated protein (IPR003854);NIAS_FLcDNA=001-029-A05;Expression=AK059502;TENOR=Os06t0729400-01;KEGG=Os06t0729400-01
Chr06	irgsp1_rep	five_prime_UTR	31082752	31082826	.	+	.	Parent=Os06t0729400-01
Chr06	irgsp1_rep	CDS	31082827	31082985	.	+	0	Parent=Os06t0729400-01
Chr06	irgsp1_rep	CDS	31083082	31083136	.	+	0	Parent=Os06t0729400-01
Chr06	irgsp1_rep	CDS	31083221	31083408	.	+	2	Parent=Os06t0729400-01
Chr06	irgsp1_rep	three_prime_UTR	31083409	31083640	.	+	.	Parent=Os06t0729400-01
Chr06	irgsp1_rep	mRNA	31083609	31089544	.	-	.	ID=Os06t0729500-01;Name=Os06t0729500-01;Locus_id=Os06g0729500;Note=Protein of unknown function DUF789 domain containing protein.;Transcript_evidence=AK241088 (DDBJ%2C Best hit);ORF_evidence=B9FR06 (UniProt);InterPro=Protein of unknown function DUF789 (IPR008507);NIAS_FLcDNA=J065074E24;TENOR=Os06t0729500-01;KEGG=Os06t0729500-01
Chr06	irgsp1_rep	five_prime_UTR	31089456	31089544	.	-	.	Parent=Os06t0729500-01
Chr06	irgsp1_rep	five_prime_UTR	31088549	31088560	.	-	.	Parent=Os06t0729500-01
Chr06	irgsp1_rep	CDS	31088447	31088548	.	-	0	Parent=Os06t0729500-01
Chr06	irgsp1_rep	CDS	31088303	31088331	.	-	0	Parent=Os06t0729500-01
Chr06	irgsp1_rep	CDS	31084988	31087756	.	-	1	Parent=Os06t0729500-01
Chr06	irgsp1_rep	CDS	31084536	31084637	.	-	1	Parent=Os06t0729500-01
Chr06	irgsp1_rep	CDS	31084246	31084414	.	-	1	Parent=Os06t0729500-01
Chr06	irgsp1_rep	CDS	31083869	31084111	.	-	0	Parent=Os06t0729500-01
Chr06	irgsp1_rep	three_prime_UTR	31083609	31083868	.	-	.	Parent=Os06t0729500-01
Chr06	irgsp1_rep	mRNA	31090188	31093308	.	-	.	ID=Os06t0729650-00;Name=Os06t0729650-00;Locus_id=Os06g0729650;Note=Similar to Photosystem II stability/assembly factor HCF136%2C chloroplastic.;Transcript_evidence=FP096975 (DDBJ);ORF_evidence=B9FR06 (UniProt);InterPro=Twin-arginine translocation pathway%2C signal sequence (IPR006311),Photosystem II HCF136%2C stability/assembly factor (IPR016705);TENOR=Os06t0729650-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	31093278	31093308	.	-	.	Parent=Os06t0729650-00
Chr06	irgsp1_rep	CDS	31092974	31093277	.	-	0	Parent=Os06t0729650-00
Chr06	irgsp1_rep	CDS	31091966	31092201	.	-	2	Parent=Os06t0729650-00
Chr06	irgsp1_rep	CDS	31091743	31091873	.	-	0	Parent=Os06t0729650-00
Chr06	irgsp1_rep	CDS	31091247	31091379	.	-	1	Parent=Os06t0729650-00
Chr06	irgsp1_rep	CDS	31091022	31091144	.	-	0	Parent=Os06t0729650-00
Chr06	irgsp1_rep	CDS	31090829	31090903	.	-	0	Parent=Os06t0729650-00
Chr06	irgsp1_rep	CDS	31090631	31090746	.	-	0	Parent=Os06t0729650-00
Chr06	irgsp1_rep	CDS	31090440	31090506	.	-	1	Parent=Os06t0729650-00
Chr06	irgsp1_rep	three_prime_UTR	31090188	31090439	.	-	.	Parent=Os06t0729650-00
Chr06	irgsp1_rep	mRNA	31102199	31102435	.	+	.	ID=Os06t0729800-01;Name=Os06t0729800-01;Locus_id=Os06g0729800;CGSNL Gene Symbol=IPT10;CGSNL Gene Name=ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 10;Oryzabase Gene Symbol Synonym(s)=OsIPT10;Oryzabase Gene Name Synonym(s)=adenosine phosphate isopentenyltransferase 10%2C isopentenyltransferase 10;Note=Hypothetical gene.;Transcript_evidence=AK241958 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J075093D01;Oryzabase=9843;TENOR=Os06t0729800-01;KEGG=Os06t0729800-01
Chr06	irgsp1_rep	five_prime_UTR	31102199	31102199	.	+	.	Parent=Os06t0729800-01
Chr06	irgsp1_rep	CDS	31102200	31102412	.	+	0	Parent=Os06t0729800-01
Chr06	irgsp1_rep	three_prime_UTR	31102413	31102435	.	+	.	Parent=Os06t0729800-01
Chr06	irgsp1_rep	mRNA	31105533	31107415	.	+	.	ID=Os06t0729900-00;Name=Os06t0729900-00;Locus_id=Os06g0729900;Note=Similar to LysM domain containing protein.;Transcript_evidence=BT054103 (DDBJ);ORF_evidence=B6SSA9 (UniProt);TENOR=Os06t0729900-00;KEGG=Os06t0729900-00
Chr06	irgsp1_rep	five_prime_UTR	31105533	31105534	.	+	.	Parent=Os06t0729900-00
Chr06	irgsp1_rep	CDS	31105535	31105696	.	+	0	Parent=Os06t0729900-00
Chr06	irgsp1_rep	CDS	31106342	31106478	.	+	0	Parent=Os06t0729900-00
Chr06	irgsp1_rep	CDS	31106728	31107415	.	+	1	Parent=Os06t0729900-00
Chr06	irgsp1_rep	mRNA	31110777	31111388	.	+	.	ID=Os06t0730000-01;Name=Os06t0730000-01;Locus_id=Os06g0730000;CGSNL Gene Symbol=SCP38;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 38;Oryzabase Gene Symbol Synonym(s)=OsSCP38;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 38;Note=Similar to Serine carboxypeptidase II-like protein.;Transcript_evidence=AK242427 (DDBJ%2C Best hit);ORF_evidence=NP_001152245.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=J080088O13;Oryzabase=19218;TENOR=Os06t0730000-01;KEGG=Os06t0730000-01
Chr06	irgsp1_rep	CDS	31110777	31111244	.	+	0	Parent=Os06t0730000-01
Chr06	irgsp1_rep	three_prime_UTR	31111245	31111388	.	+	.	Parent=Os06t0730000-01
Chr06	irgsp1_rep	mRNA	31114762	31114993	.	+	.	ID=Os06t0730150-00;Name=Os06t0730150-00;Locus_id=Os06g0730150;Note=Hypothetical protein.;Transcript_evidence=AK372347 (DDBJ);ORF_evidence=GeneMark;TENOR=Os06t0730150-00
Chr06	irgsp1_rep	five_prime_UTR	31114762	31114762	.	+	.	Parent=Os06t0730150-00
Chr06	irgsp1_rep	CDS	31114763	31114993	.	+	0	Parent=Os06t0730150-00
Chr06	irgsp1_rep	mRNA	31118702	31120365	.	+	.	ID=Os06t0730200-01;Name=Os06t0730200-01;Locus_id=Os06g0730200;Note=Similar to ROOT HAIRLESS 1.;Transcript_evidence=AK066612 (DDBJ%2C Best hit);ORF_evidence=B6UAF0 (UniProt);NIAS_FLcDNA=J013071D21;TENOR=Os06t0730200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	five_prime_UTR	31118702	31118746	.	+	.	Parent=Os06t0730200-01
Chr06	irgsp1_rep	CDS	31118747	31119055	.	+	0	Parent=Os06t0730200-01
Chr06	irgsp1_rep	CDS	31119145	31119224	.	+	0	Parent=Os06t0730200-01
Chr06	irgsp1_rep	CDS	31119378	31119378	.	+	1	Parent=Os06t0730200-01
Chr06	irgsp1_rep	three_prime_UTR	31119379	31119467	.	+	.	Parent=Os06t0730200-01
Chr06	irgsp1_rep	three_prime_UTR	31119570	31119810	.	+	.	Parent=Os06t0730200-01
Chr06	irgsp1_rep	three_prime_UTR	31120027	31120105	.	+	.	Parent=Os06t0730200-01
Chr06	irgsp1_rep	three_prime_UTR	31120221	31120365	.	+	.	Parent=Os06t0730200-01
Chr06	irgsp1_rep	mRNA	31127430	31130681	.	+	.	ID=Os06t0730300-01;Name=Os06t0730300-01;Locus_id=Os06g0730300;Note=Protein of unknown function DUF829%2C eukaryotic family protein.;Transcript_evidence=AK099901 (DDBJ%2C Best hit);ORF_evidence=Q5Z419 (UniProt);InterPro=Protein of unknown function DUF829%2C TMEM53 (IPR008547);NIAS_FLcDNA=J013114F10;Expression=AK099901;TENOR=Os06t0730300-01;KEGG=Os06t0730300-01
Chr06	irgsp1_rep	five_prime_UTR	31127430	31127581	.	+	.	Parent=Os06t0730300-01
Chr06	irgsp1_rep	five_prime_UTR	31128108	31128200	.	+	.	Parent=Os06t0730300-01
Chr06	irgsp1_rep	five_prime_UTR	31128474	31128540	.	+	.	Parent=Os06t0730300-01
Chr06	irgsp1_rep	CDS	31128541	31129211	.	+	0	Parent=Os06t0730300-01
Chr06	irgsp1_rep	CDS	31129297	31129402	.	+	1	Parent=Os06t0730300-01
Chr06	irgsp1_rep	CDS	31129633	31129835	.	+	0	Parent=Os06t0730300-01
Chr06	irgsp1_rep	CDS	31130112	31130403	.	+	1	Parent=Os06t0730300-01
Chr06	irgsp1_rep	three_prime_UTR	31130404	31130681	.	+	.	Parent=Os06t0730300-01
Chr06	irgsp1_rep	mRNA	31133011	31135752	.	+	.	ID=Os06t0730500-01;Name=Os06t0730500-01;Locus_id=Os06g0730500;Note=Conserved hypothetical protein.;Transcript_evidence=AK101650 (DDBJ%2C Best hit);ORF_evidence=B8B2X5 (UniProt);NIAS_FLcDNA=J033056M19;Expression=AK101650;TENOR=Os06t0730500-01;KEGG=Os06t0730500-01
Chr06	irgsp1_rep	five_prime_UTR	31133011	31133223	.	+	.	Parent=Os06t0730500-01
Chr06	irgsp1_rep	five_prime_UTR	31134051	31134166	.	+	.	Parent=Os06t0730500-01
Chr06	irgsp1_rep	CDS	31134167	31134235	.	+	0	Parent=Os06t0730500-01
Chr06	irgsp1_rep	CDS	31134678	31134782	.	+	0	Parent=Os06t0730500-01
Chr06	irgsp1_rep	CDS	31134862	31134964	.	+	0	Parent=Os06t0730500-01
Chr06	irgsp1_rep	CDS	31135051	31135243	.	+	2	Parent=Os06t0730500-01
Chr06	irgsp1_rep	CDS	31135528	31135579	.	+	1	Parent=Os06t0730500-01
Chr06	irgsp1_rep	three_prime_UTR	31135580	31135752	.	+	.	Parent=Os06t0730500-01
Chr06	irgsp1_rep	mRNA	31136693	31145705	.	-	.	ID=Os06t0730600-01;Name=Os06t0730600-01;Locus_id=Os06g0730600;Oryzabase Gene Symbol Synonym(s)=OsPOP15%2C POP15;Oryzabase Gene Name Synonym(s)=Prolyl Oligopeptidase 15%2C PROLYL OLIGOPEPTIDASE 15;Note=Peptidase S9A%2C prolyl oligopeptidase family protein.;Transcript_evidence=AK070316 (DDBJ%2C Best hit);ORF_evidence=NP_001147906.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: serine-type peptidase activity (GO:0008236),Molecular Function: serine-type exopeptidase activity (GO:0070008);InterPro=Peptidase S9%2C prolyl oligopeptidase%2C catalytic domain (IPR001375),Peptidase S9A%2C prolyl oligopeptidase (IPR002470),Peptidase S9A/B/C%2C oligopeptidase%2C N-terminal beta-propeller (IPR004106),Peptidase S9A%2C oligopeptidase%2C N-terminal (IPR023302);NIAS_FLcDNA=J023052A16;Oryzabase=20023;Expression=AK070316;TENOR=Os06t0730600-01;KEGG=Os06t0730600-01 (EC:3.4.21.83)
Chr06	irgsp1_rep	CDS	31145426	31145705	.	-	0	Parent=Os06t0730600-01
Chr06	irgsp1_rep	CDS	31143419	31143699	.	-	2	Parent=Os06t0730600-01
Chr06	irgsp1_rep	CDS	31143140	31143334	.	-	0	Parent=Os06t0730600-01
Chr06	irgsp1_rep	CDS	31142152	31142498	.	-	0	Parent=Os06t0730600-01
Chr06	irgsp1_rep	CDS	31140778	31141069	.	-	1	Parent=Os06t0730600-01
Chr06	irgsp1_rep	CDS	31139191	31139349	.	-	0	Parent=Os06t0730600-01
Chr06	irgsp1_rep	CDS	31138315	31138680	.	-	0	Parent=Os06t0730600-01
Chr06	irgsp1_rep	CDS	31137678	31137743	.	-	0	Parent=Os06t0730600-01
Chr06	irgsp1_rep	CDS	31137363	31137411	.	-	0	Parent=Os06t0730600-01
Chr06	irgsp1_rep	CDS	31137159	31137282	.	-	2	Parent=Os06t0730600-01
Chr06	irgsp1_rep	CDS	31136990	31137071	.	-	1	Parent=Os06t0730600-01
Chr06	irgsp1_rep	three_prime_UTR	31136693	31136989	.	-	.	Parent=Os06t0730600-01
Chr06	irgsp1_rep	mRNA	31147957	31150545	.	+	.	ID=Os06t0730800-01;Name=Os06t0730800-01;Locus_id=Os06g0730800;Note=mRNA splicing factor%2C Cwf18 family protein.;Transcript_evidence=AK071566 (DDBJ%2C Best hit);ORF_evidence=B8B2X7 (UniProt);InterPro=mRNA splicing factor%2C Cwf18 (IPR013169);NIAS_FLcDNA=J023104M24;Expression=AK071566;TENOR=Os06t0730800-01;KEGG=Os06t0730800-01
Chr06	irgsp1_rep	five_prime_UTR	31147957	31148048	.	+	.	Parent=Os06t0730800-01
Chr06	irgsp1_rep	CDS	31148049	31148155	.	+	0	Parent=Os06t0730800-01
Chr06	irgsp1_rep	CDS	31149161	31149292	.	+	1	Parent=Os06t0730800-01
Chr06	irgsp1_rep	CDS	31149667	31149802	.	+	1	Parent=Os06t0730800-01
Chr06	irgsp1_rep	CDS	31149893	31150007	.	+	0	Parent=Os06t0730800-01
Chr06	irgsp1_rep	CDS	31150131	31150189	.	+	2	Parent=Os06t0730800-01
Chr06	irgsp1_rep	three_prime_UTR	31150190	31150545	.	+	.	Parent=Os06t0730800-01
Chr06	irgsp1_rep	mRNA	31151348	31156611	.	+	.	ID=Os06t0730900-01;Name=Os06t0730900-01;Locus_id=Os06g0730900;Note=Peptidase A22B%2C signal peptide peptidase domain containing protein.;Transcript_evidence=AK064963 (DDBJ%2C Best hit);ORF_evidence=XP_002887944.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Protease-associated domain%2C PA (IPR003137),Peptidase A22%2C presenilin signal peptide (IPR006639),Peptidase A22B%2C signal peptide peptidase (IPR007369);NIAS_FLcDNA=J013001A18;Expression=AK064963;TENOR=Os06t0730900-01;KEGG=Os06t0730900-01
Chr06	irgsp1_rep	five_prime_UTR	31151348	31151472	.	+	.	Parent=Os06t0730900-01
Chr06	irgsp1_rep	CDS	31151473	31151607	.	+	0	Parent=Os06t0730900-01
Chr06	irgsp1_rep	CDS	31152878	31153036	.	+	0	Parent=Os06t0730900-01
Chr06	irgsp1_rep	CDS	31153118	31153229	.	+	0	Parent=Os06t0730900-01
Chr06	irgsp1_rep	CDS	31153905	31154024	.	+	2	Parent=Os06t0730900-01
Chr06	irgsp1_rep	CDS	31154165	31154316	.	+	2	Parent=Os06t0730900-01
Chr06	irgsp1_rep	CDS	31154400	31154582	.	+	0	Parent=Os06t0730900-01
Chr06	irgsp1_rep	CDS	31154839	31154873	.	+	0	Parent=Os06t0730900-01
Chr06	irgsp1_rep	CDS	31154978	31155134	.	+	1	Parent=Os06t0730900-01
Chr06	irgsp1_rep	CDS	31155229	31155282	.	+	0	Parent=Os06t0730900-01
Chr06	irgsp1_rep	CDS	31155403	31155495	.	+	0	Parent=Os06t0730900-01
Chr06	irgsp1_rep	CDS	31155586	31155728	.	+	0	Parent=Os06t0730900-01
Chr06	irgsp1_rep	CDS	31155840	31155910	.	+	1	Parent=Os06t0730900-01
Chr06	irgsp1_rep	CDS	31156057	31156140	.	+	2	Parent=Os06t0730900-01
Chr06	irgsp1_rep	CDS	31156224	31156354	.	+	2	Parent=Os06t0730900-01
Chr06	irgsp1_rep	three_prime_UTR	31156355	31156611	.	+	.	Parent=Os06t0730900-01
Chr06	irgsp1_rep	mRNA	31151401	31156593	.	+	.	ID=Os06t0730900-02;Name=Os06t0730900-02;Locus_id=Os06g0730900;Note=Peptidase A22B%2C signal peptide peptidase domain containing protein.;Transcript_evidence=AK099361 (DDBJ%2C Best hit),AK065172 (DDBJ%2C Best hit);ORF_evidence=XP_002887944.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Protease-associated domain%2C PA (IPR003137),Peptidase A22%2C presenilin signal peptide (IPR006639),Peptidase A22B%2C signal peptide peptidase (IPR007369);NIAS_FLcDNA=J033048M07,J013002C21;TENOR=Os06t0730900-02
Chr06	irgsp1_rep	five_prime_UTR	31151401	31151472	.	+	.	Parent=Os06t0730900-02
Chr06	irgsp1_rep	CDS	31151473	31151607	.	+	0	Parent=Os06t0730900-02
Chr06	irgsp1_rep	CDS	31152878	31153036	.	+	0	Parent=Os06t0730900-02
Chr06	irgsp1_rep	CDS	31153118	31153229	.	+	0	Parent=Os06t0730900-02
Chr06	irgsp1_rep	CDS	31153905	31154024	.	+	2	Parent=Os06t0730900-02
Chr06	irgsp1_rep	CDS	31154165	31154316	.	+	2	Parent=Os06t0730900-02
Chr06	irgsp1_rep	CDS	31154400	31154582	.	+	0	Parent=Os06t0730900-02
Chr06	irgsp1_rep	CDS	31154839	31154873	.	+	0	Parent=Os06t0730900-02
Chr06	irgsp1_rep	CDS	31154978	31155134	.	+	1	Parent=Os06t0730900-02
Chr06	irgsp1_rep	CDS	31155229	31155282	.	+	0	Parent=Os06t0730900-02
Chr06	irgsp1_rep	CDS	31155403	31155495	.	+	0	Parent=Os06t0730900-02
Chr06	irgsp1_rep	CDS	31155586	31155728	.	+	0	Parent=Os06t0730900-02
Chr06	irgsp1_rep	CDS	31155840	31155910	.	+	1	Parent=Os06t0730900-02
Chr06	irgsp1_rep	CDS	31156057	31156140	.	+	2	Parent=Os06t0730900-02
Chr06	irgsp1_rep	CDS	31156224	31156354	.	+	2	Parent=Os06t0730900-02
Chr06	irgsp1_rep	three_prime_UTR	31156355	31156593	.	+	.	Parent=Os06t0730900-02
Chr06	irgsp1_rep	mRNA	31151451	31156611	.	+	.	ID=Os06t0730900-03;Name=Os06t0730900-03;Locus_id=Os06g0730900;Note=Peptidase A22B%2C signal peptide peptidase domain containing protein.;Transcript_evidence=AK062118 (DDBJ%2C Best hit);ORF_evidence=XP_002887944.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Protease-associated domain%2C PA (IPR003137),Peptidase A22%2C presenilin signal peptide (IPR006639),Peptidase A22B%2C signal peptide peptidase (IPR007369);NIAS_FLcDNA=001-045-C08;Expression=AK062118;TENOR=Os06t0730900-03;KEGG=Os06t0730900-03
Chr06	irgsp1_rep	five_prime_UTR	31151451	31151472	.	+	.	Parent=Os06t0730900-03
Chr06	irgsp1_rep	CDS	31151473	31151607	.	+	0	Parent=Os06t0730900-03
Chr06	irgsp1_rep	CDS	31152878	31153036	.	+	0	Parent=Os06t0730900-03
Chr06	irgsp1_rep	CDS	31153118	31153229	.	+	0	Parent=Os06t0730900-03
Chr06	irgsp1_rep	CDS	31153905	31154024	.	+	2	Parent=Os06t0730900-03
Chr06	irgsp1_rep	CDS	31154165	31154316	.	+	2	Parent=Os06t0730900-03
Chr06	irgsp1_rep	CDS	31154400	31154582	.	+	0	Parent=Os06t0730900-03
Chr06	irgsp1_rep	CDS	31154839	31154873	.	+	0	Parent=Os06t0730900-03
Chr06	irgsp1_rep	CDS	31154978	31155134	.	+	1	Parent=Os06t0730900-03
Chr06	irgsp1_rep	CDS	31155229	31155282	.	+	0	Parent=Os06t0730900-03
Chr06	irgsp1_rep	CDS	31155403	31155495	.	+	0	Parent=Os06t0730900-03
Chr06	irgsp1_rep	CDS	31155586	31155728	.	+	0	Parent=Os06t0730900-03
Chr06	irgsp1_rep	CDS	31155840	31155910	.	+	1	Parent=Os06t0730900-03
Chr06	irgsp1_rep	CDS	31156057	31156140	.	+	2	Parent=Os06t0730900-03
Chr06	irgsp1_rep	CDS	31156224	31156354	.	+	2	Parent=Os06t0730900-03
Chr06	irgsp1_rep	three_prime_UTR	31156355	31156611	.	+	.	Parent=Os06t0730900-03
Chr06	irgsp1_rep	mRNA	31151491	31156308	.	-	.	ID=Os06t0730950-00;Name=Os06t0730950-00;Locus_id=Os06g0730950;Note=Hypothetical protein.;Transcript_evidence=tplb0045c05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os06t0730950-00
Chr06	irgsp1_rep	five_prime_UTR	31156239	31156308	.	-	.	Parent=Os06t0730950-00
Chr06	irgsp1_rep	five_prime_UTR	31156051	31156152	.	-	.	Parent=Os06t0730950-00
Chr06	irgsp1_rep	five_prime_UTR	31155873	31155907	.	-	.	Parent=Os06t0730950-00
Chr06	irgsp1_rep	five_prime_UTR	31155584	31155761	.	-	.	Parent=Os06t0730950-00
Chr06	irgsp1_rep	five_prime_UTR	31155356	31155493	.	-	.	Parent=Os06t0730950-00
Chr06	irgsp1_rep	five_prime_UTR	31154956	31155131	.	-	.	Parent=Os06t0730950-00
Chr06	irgsp1_rep	five_prime_UTR	31154477	31154594	.	-	.	Parent=Os06t0730950-00
Chr06	irgsp1_rep	CDS	31154403	31154476	.	-	0	Parent=Os06t0730950-00
Chr06	irgsp1_rep	CDS	31154148	31154319	.	-	1	Parent=Os06t0730950-00
Chr06	irgsp1_rep	CDS	31153994	31154005	.	-	0	Parent=Os06t0730950-00
Chr06	irgsp1_rep	three_prime_UTR	31153874	31153993	.	-	.	Parent=Os06t0730950-00
Chr06	irgsp1_rep	three_prime_UTR	31153060	31153199	.	-	.	Parent=Os06t0730950-00
Chr06	irgsp1_rep	three_prime_UTR	31152877	31152983	.	-	.	Parent=Os06t0730950-00
Chr06	irgsp1_rep	three_prime_UTR	31151491	31151606	.	-	.	Parent=Os06t0730950-00
Chr06	irgsp1_rep	mRNA	31157329	31158069	.	+	.	ID=Os06t0731000-00;Name=Os06t0731000-00;Locus_id=Os06g0731000;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001175010.1 (RefSeq);TENOR=Os06t0731000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	31157329	31157602	.	+	0	Parent=Os06t0731000-00
Chr06	irgsp1_rep	CDS	31157822	31158069	.	+	2	Parent=Os06t0731000-00
Chr06	irgsp1_rep	mRNA	31162245	31167026	.	-	.	ID=Os06t0731100-00;Name=Os06t0731100-00;Locus_id=Os06g0731100;Note=Zinc finger%2C PHD-type domain containing protein.;Transcript_evidence=AK363285 (DDBJ);ORF_evidence=A2YH89 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-type%2C conserved site (IPR019786),Zinc finger%2C PHD-finger (IPR019787);TENOR=Os06t0731100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	31166876	31167026	.	-	0	Parent=Os06t0731100-00
Chr06	irgsp1_rep	CDS	31166220	31166434	.	-	2	Parent=Os06t0731100-00
Chr06	irgsp1_rep	three_prime_UTR	31166208	31166219	.	-	.	Parent=Os06t0731100-00
Chr06	irgsp1_rep	three_prime_UTR	31164835	31165177	.	-	.	Parent=Os06t0731100-00
Chr06	irgsp1_rep	three_prime_UTR	31164331	31164410	.	-	.	Parent=Os06t0731100-00
Chr06	irgsp1_rep	three_prime_UTR	31164181	31164248	.	-	.	Parent=Os06t0731100-00
Chr06	irgsp1_rep	three_prime_UTR	31164010	31164092	.	-	.	Parent=Os06t0731100-00
Chr06	irgsp1_rep	three_prime_UTR	31162245	31162391	.	-	.	Parent=Os06t0731100-00
Chr06	irgsp1_rep	mRNA	31169698	31174837	.	-	.	ID=Os06t0731200-01;Name=Os06t0731200-01;Locus_id=Os06g0731200;CGSNL Gene Symbol=ABCG16;CGSNL Gene Name=ABC TRANSPORTER G FAMILY MEMBER 16;Oryzabase Gene Symbol Synonym(s)=OsABCG16%2C OsABCG16_1%2C OsABCG16_2%2C OsSTA183;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 16;Note=Similar to ABC transporter-like protein.;Transcript_evidence=AK071489 (DDBJ%2C Best hit);ORF_evidence=XP_002303777.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=J023098E09;Oryzabase=11993;Expression=AK071489;TENOR=Os06t0731200-01;KEGG=Os06t0731200-01
Chr06	irgsp1_rep	five_prime_UTR	31174814	31174837	.	-	.	Parent=Os06t0731200-01
Chr06	irgsp1_rep	CDS	31174587	31174813	.	-	0	Parent=Os06t0731200-01
Chr06	irgsp1_rep	CDS	31174412	31174488	.	-	1	Parent=Os06t0731200-01
Chr06	irgsp1_rep	CDS	31173999	31174271	.	-	2	Parent=Os06t0731200-01
Chr06	irgsp1_rep	CDS	31173610	31173673	.	-	2	Parent=Os06t0731200-01
Chr06	irgsp1_rep	CDS	31173378	31173524	.	-	1	Parent=Os06t0731200-01
Chr06	irgsp1_rep	CDS	31173171	31173205	.	-	1	Parent=Os06t0731200-01
Chr06	irgsp1_rep	CDS	31172818	31172891	.	-	2	Parent=Os06t0731200-01
Chr06	irgsp1_rep	CDS	31171875	31172725	.	-	0	Parent=Os06t0731200-01
Chr06	irgsp1_rep	CDS	31171479	31171775	.	-	1	Parent=Os06t0731200-01
Chr06	irgsp1_rep	CDS	31170917	31171393	.	-	1	Parent=Os06t0731200-01
Chr06	irgsp1_rep	CDS	31170674	31170822	.	-	1	Parent=Os06t0731200-01
Chr06	irgsp1_rep	CDS	31170238	31170532	.	-	2	Parent=Os06t0731200-01
Chr06	irgsp1_rep	CDS	31170125	31170146	.	-	1	Parent=Os06t0731200-01
Chr06	irgsp1_rep	three_prime_UTR	31169698	31170124	.	-	.	Parent=Os06t0731200-01
Chr06	irgsp1_rep	mRNA	31179198	31179799	.	-	.	ID=Os06t0731300-00;Name=Os06t0731300-00;Locus_id=Os06g0731300;Note=Surface protein from Gram-positive cocci%2C anchor region domain containing protein.;Transcript_evidence=AK358759 (DDBJ);ORF_evidence=Q5Z408 (UniProt);GO=Cellular Component: cell surface (GO:0009986),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C cysteine-rich domain (IPR001305),Surface protein from Gram-positive cocci (IPR001899);TENOR=Os06t0731300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	31179417	31179799	.	-	0	Parent=Os06t0731300-00
Chr06	irgsp1_rep	CDS	31179203	31179317	.	-	1	Parent=Os06t0731300-00
Chr06	irgsp1_rep	three_prime_UTR	31179198	31179202	.	-	.	Parent=Os06t0731300-00
Chr06	irgsp1_rep	mRNA	31181670	31184726	.	+	.	ID=Os06t0731400-01;Name=Os06t0731400-01;Locus_id=Os06g0731400;Note=Hypothetical conserved gene.;Transcript_evidence=AK120175 (DDBJ%2C Best hit);ORF_evidence=B8B2Y0 (UniProt);NIAS_FLcDNA=J013033B05;Expression=AK120175;TENOR=Os06t0731400-01;KEGG=Os06t0731400-01
Chr06	irgsp1_rep	five_prime_UTR	31181670	31181757	.	+	.	Parent=Os06t0731400-01
Chr06	irgsp1_rep	CDS	31181758	31181939	.	+	0	Parent=Os06t0731400-01
Chr06	irgsp1_rep	CDS	31182038	31182212	.	+	1	Parent=Os06t0731400-01
Chr06	irgsp1_rep	three_prime_UTR	31182213	31182339	.	+	.	Parent=Os06t0731400-01
Chr06	irgsp1_rep	three_prime_UTR	31182415	31182519	.	+	.	Parent=Os06t0731400-01
Chr06	irgsp1_rep	three_prime_UTR	31182623	31182817	.	+	.	Parent=Os06t0731400-01
Chr06	irgsp1_rep	three_prime_UTR	31183908	31184726	.	+	.	Parent=Os06t0731400-01
Chr06	irgsp1_rep	mRNA	31181677	31184296	.	+	.	ID=Os06t0731400-02;Name=Os06t0731400-02;Locus_id=Os06g0731400;Note=Tetraspanin domain containing protein.;Transcript_evidence=AK065285 (DDBJ%2C Best hit),AK098979 (DDBJ%2C Best hit);ORF_evidence=B8B2Y0 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Tetraspanin (IPR018499);NIAS_FLcDNA=J013002M13,J013093C17;TENOR=Os06t0731400-02
Chr06	irgsp1_rep	five_prime_UTR	31181677	31181757	.	+	.	Parent=Os06t0731400-02
Chr06	irgsp1_rep	CDS	31181758	31181939	.	+	0	Parent=Os06t0731400-02
Chr06	irgsp1_rep	CDS	31182038	31182137	.	+	1	Parent=Os06t0731400-02
Chr06	irgsp1_rep	CDS	31182259	31182339	.	+	0	Parent=Os06t0731400-02
Chr06	irgsp1_rep	CDS	31182415	31182519	.	+	0	Parent=Os06t0731400-02
Chr06	irgsp1_rep	CDS	31182623	31182817	.	+	0	Parent=Os06t0731400-02
Chr06	irgsp1_rep	CDS	31183908	31183973	.	+	0	Parent=Os06t0731400-02
Chr06	irgsp1_rep	three_prime_UTR	31183974	31184296	.	+	.	Parent=Os06t0731400-02
Chr06	irgsp1_rep	mRNA	31184955	31185724	.	-	.	ID=Os06t0731500-01;Name=Os06t0731500-01;Locus_id=Os06g0731500;Oryzabase Gene Symbol Synonym(s)=JMJ708;Oryzabase Gene Name Synonym(s)=Jumonji 708;Note=Conserved hypothetical protein.;Transcript_evidence=AK062465 (DDBJ%2C Best hit);ORF_evidence=Q5Z405 (UniProt);NIAS_FLcDNA=001-103-E01;Oryzabase=15207;Expression=AK062465;TENOR=Os06t0731500-01;KEGG=Os06t0731500-01
Chr06	irgsp1_rep	five_prime_UTR	31185724	31185724	.	-	.	Parent=Os06t0731500-01
Chr06	irgsp1_rep	CDS	31185620	31185723	.	-	0	Parent=Os06t0731500-01
Chr06	irgsp1_rep	CDS	31185074	31185302	.	-	1	Parent=Os06t0731500-01
Chr06	irgsp1_rep	three_prime_UTR	31184955	31185073	.	-	.	Parent=Os06t0731500-01
Chr06	irgsp1_rep	mRNA	31188393	31197762	.	-	.	ID=Os06t0731600-00;Name=Os06t0731600-00;Locus_id=Os06g0731600;Note=ARID/BRIGHT DNA-binding domain domain containing protein.;Transcript_evidence=AK373567 (DDBJ);ORF_evidence=B8B2Y1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: intracellular (GO:0005622),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=ARID/BRIGHT DNA-binding domain (IPR001606),Zinc finger%2C PHD-type (IPR001965),Transcription factor jumonji/aspartyl beta-hydroxylase (IPR003347),Transcription factor jumonji%2C JmjN (IPR003349),Zinc finger%2C C5HC2-type (IPR004198),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Transcription factor jumonji (IPR013129),Lysine-specific demethylase-like domain (IPR013637),Zinc finger%2C PHD-type%2C conserved site (IPR019786),Zinc finger%2C PHD-finger (IPR019787);TENOR=Os06t0731600-00
Chr06	irgsp1_rep	CDS	31196297	31197762	.	-	0	Parent=Os06t0731600-00
Chr06	irgsp1_rep	CDS	31195271	31195328	.	-	1	Parent=Os06t0731600-00
Chr06	irgsp1_rep	CDS	31194609	31194731	.	-	0	Parent=Os06t0731600-00
Chr06	irgsp1_rep	CDS	31194324	31194381	.	-	0	Parent=Os06t0731600-00
Chr06	irgsp1_rep	CDS	31194113	31194249	.	-	2	Parent=Os06t0731600-00
Chr06	irgsp1_rep	CDS	31193258	31193416	.	-	0	Parent=Os06t0731600-00
Chr06	irgsp1_rep	CDS	31193088	31193174	.	-	0	Parent=Os06t0731600-00
Chr06	irgsp1_rep	CDS	31192713	31192883	.	-	0	Parent=Os06t0731600-00
Chr06	irgsp1_rep	CDS	31192281	31192433	.	-	0	Parent=Os06t0731600-00
Chr06	irgsp1_rep	CDS	31191997	31192188	.	-	0	Parent=Os06t0731600-00
Chr06	irgsp1_rep	CDS	31191839	31191904	.	-	0	Parent=Os06t0731600-00
Chr06	irgsp1_rep	CDS	31191556	31191651	.	-	0	Parent=Os06t0731600-00
Chr06	irgsp1_rep	CDS	31191314	31191400	.	-	0	Parent=Os06t0731600-00
Chr06	irgsp1_rep	CDS	31191066	31191182	.	-	0	Parent=Os06t0731600-00
Chr06	irgsp1_rep	CDS	31190784	31190995	.	-	0	Parent=Os06t0731600-00
Chr06	irgsp1_rep	CDS	31190667	31190694	.	-	1	Parent=Os06t0731600-00
Chr06	irgsp1_rep	three_prime_UTR	31190635	31190666	.	-	.	Parent=Os06t0731600-00
Chr06	irgsp1_rep	three_prime_UTR	31190120	31190178	.	-	.	Parent=Os06t0731600-00
Chr06	irgsp1_rep	three_prime_UTR	31189909	31190040	.	-	.	Parent=Os06t0731600-00
Chr06	irgsp1_rep	three_prime_UTR	31189677	31189833	.	-	.	Parent=Os06t0731600-00
Chr06	irgsp1_rep	three_prime_UTR	31189255	31189584	.	-	.	Parent=Os06t0731600-00
Chr06	irgsp1_rep	three_prime_UTR	31188554	31188740	.	-	.	Parent=Os06t0731600-00
Chr06	irgsp1_rep	three_prime_UTR	31188393	31188458	.	-	.	Parent=Os06t0731600-00
Chr06	irgsp1_rep	mRNA	31204042	31205929	.	-	.	ID=Os06t0731700-01;Name=Os06t0731700-01;Locus_id=Os06g0731700;Note=Similar to predicted protein.;Transcript_evidence=AK241390 (DDBJ%2C Best hit);ORF_evidence=Q5Z403 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J065157E16;TENOR=Os06t0731700-01;KEGG=Os06t0731700-01
Chr06	irgsp1_rep	five_prime_UTR	31205928	31205929	.	-	.	Parent=Os06t0731700-01
Chr06	irgsp1_rep	CDS	31205166	31205927	.	-	0	Parent=Os06t0731700-01
Chr06	irgsp1_rep	CDS	31204645	31204735	.	-	0	Parent=Os06t0731700-01
Chr06	irgsp1_rep	CDS	31204242	31204438	.	-	2	Parent=Os06t0731700-01
Chr06	irgsp1_rep	three_prime_UTR	31204042	31204241	.	-	.	Parent=Os06t0731700-01
Chr06	irgsp1_rep	mRNA	31208373	31209382	.	+	.	ID=Os06t0731750-00;Name=Os06t0731750-00;Locus_id=Os06g0731750;Note=Hypothetical gene.;Transcript_evidence=BT016392 (DDBJ);ORF_evidence=longestORF;TENOR=Os06t0731750-00;KEGG=Os06t0731750-00
Chr06	irgsp1_rep	five_prime_UTR	31208373	31208746	.	+	.	Parent=Os06t0731750-00
Chr06	irgsp1_rep	CDS	31208747	31208959	.	+	0	Parent=Os06t0731750-00
Chr06	irgsp1_rep	three_prime_UTR	31208960	31209153	.	+	.	Parent=Os06t0731750-00
Chr06	irgsp1_rep	three_prime_UTR	31209259	31209382	.	+	.	Parent=Os06t0731750-00
Chr06	irgsp1_rep	mRNA	31208435	31211392	.	-	.	ID=Os06t0731800-01;Name=Os06t0731800-01;Locus_id=Os06g0731800;Note=Clathrin light chain family protein.;Transcript_evidence=AK069288 (DDBJ%2C Best hit);ORF_evidence=Q259D4 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: clathrin coat of trans-Golgi network vesicle (GO:0030130),Cellular Component: clathrin coat of coated pit (GO:0030132),Molecular Function: structural molecule activity (GO:0005198);InterPro=Clathrin light chain (IPR000996);NIAS_FLcDNA=J023014P04;Expression=AK069288;TENOR=Os06t0731800-01;KEGG=Os06t0731800-01
Chr06	irgsp1_rep	five_prime_UTR	31211267	31211392	.	-	.	Parent=Os06t0731800-01
Chr06	irgsp1_rep	CDS	31210971	31211266	.	-	0	Parent=Os06t0731800-01
Chr06	irgsp1_rep	CDS	31209266	31209419	.	-	1	Parent=Os06t0731800-01
Chr06	irgsp1_rep	CDS	31208734	31209159	.	-	0	Parent=Os06t0731800-01
Chr06	irgsp1_rep	three_prime_UTR	31208435	31208733	.	-	.	Parent=Os06t0731800-01
Chr06	irgsp1_rep	mRNA	31212403	31217514	.	+	.	ID=Os06t0731900-01;Name=Os06t0731900-01;Locus_id=Os06g0731900;Note=Protein of unknown function DUF707 family protein.;Transcript_evidence=AK064258 (DDBJ%2C Best hit);ORF_evidence=B4FAK0 (UniProt);InterPro=Protein of unknown function DUF707 (IPR007877);NIAS_FLcDNA=002-105-D01;Expression=AK064258;TENOR=Os06t0731900-01;KEGG=Os06t0731900-01
Chr06	irgsp1_rep	five_prime_UTR	31212403	31212532	.	+	.	Parent=Os06t0731900-01
Chr06	irgsp1_rep	CDS	31212533	31212625	.	+	0	Parent=Os06t0731900-01
Chr06	irgsp1_rep	CDS	31212758	31212910	.	+	0	Parent=Os06t0731900-01
Chr06	irgsp1_rep	CDS	31213127	31213210	.	+	0	Parent=Os06t0731900-01
Chr06	irgsp1_rep	CDS	31213352	31213470	.	+	0	Parent=Os06t0731900-01
Chr06	irgsp1_rep	CDS	31213670	31213771	.	+	1	Parent=Os06t0731900-01
Chr06	irgsp1_rep	CDS	31214972	31215091	.	+	1	Parent=Os06t0731900-01
Chr06	irgsp1_rep	CDS	31215186	31215251	.	+	1	Parent=Os06t0731900-01
Chr06	irgsp1_rep	CDS	31215464	31215530	.	+	1	Parent=Os06t0731900-01
Chr06	irgsp1_rep	CDS	31215621	31215674	.	+	0	Parent=Os06t0731900-01
Chr06	irgsp1_rep	CDS	31216343	31216435	.	+	0	Parent=Os06t0731900-01
Chr06	irgsp1_rep	CDS	31216905	31216937	.	+	0	Parent=Os06t0731900-01
Chr06	irgsp1_rep	CDS	31217031	31217129	.	+	0	Parent=Os06t0731900-01
Chr06	irgsp1_rep	three_prime_UTR	31217130	31217514	.	+	.	Parent=Os06t0731900-01
Chr06	irgsp1_rep	mRNA	31212465	31217518	.	+	.	ID=Os06t0731900-02;Name=Os06t0731900-02;Locus_id=Os06g0731900;Note=Similar to Lysine ketoglutarate reductase trans-splicing related 1.;Transcript_evidence=AK073333 (DDBJ%2C Best hit);ORF_evidence=B4FAK0 (UniProt);InterPro=Protein of unknown function DUF707 (IPR007877);NIAS_FLcDNA=J033024G18;Expression=AK073333;TENOR=Os06t0731900-02;KEGG=Os06t0731900-02
Chr06	irgsp1_rep	five_prime_UTR	31212465	31212532	.	+	.	Parent=Os06t0731900-02
Chr06	irgsp1_rep	CDS	31212533	31212625	.	+	0	Parent=Os06t0731900-02
Chr06	irgsp1_rep	CDS	31212758	31212910	.	+	0	Parent=Os06t0731900-02
Chr06	irgsp1_rep	CDS	31213127	31213210	.	+	0	Parent=Os06t0731900-02
Chr06	irgsp1_rep	CDS	31213352	31213467	.	+	0	Parent=Os06t0731900-02
Chr06	irgsp1_rep	CDS	31213670	31213771	.	+	1	Parent=Os06t0731900-02
Chr06	irgsp1_rep	CDS	31214972	31215091	.	+	1	Parent=Os06t0731900-02
Chr06	irgsp1_rep	CDS	31215186	31215251	.	+	1	Parent=Os06t0731900-02
Chr06	irgsp1_rep	CDS	31215464	31215530	.	+	1	Parent=Os06t0731900-02
Chr06	irgsp1_rep	CDS	31215621	31215674	.	+	0	Parent=Os06t0731900-02
Chr06	irgsp1_rep	CDS	31216343	31216435	.	+	0	Parent=Os06t0731900-02
Chr06	irgsp1_rep	CDS	31216905	31216937	.	+	0	Parent=Os06t0731900-02
Chr06	irgsp1_rep	CDS	31217031	31217129	.	+	0	Parent=Os06t0731900-02
Chr06	irgsp1_rep	three_prime_UTR	31217130	31217518	.	+	.	Parent=Os06t0731900-02
Chr06	irgsp1_rep	mRNA	31217788	31219940	.	-	.	ID=Os06t0731950-01;Name=Os06t0731950-01;Locus_id=Os06g0731950;Note=Conserved hypothetical protein.;Transcript_evidence=AK241967 (DDBJ%2C Best hit);ORF_evidence=NP_001175012.1 (RefSeq);NIAS_FLcDNA=J075095H14;TENOR=Os06t0731950-01;KEGG=Os06t0731950-01
Chr06	irgsp1_rep	five_prime_UTR	31219898	31219940	.	-	.	Parent=Os06t0731950-01
Chr06	irgsp1_rep	CDS	31219806	31219897	.	-	0	Parent=Os06t0731950-01
Chr06	irgsp1_rep	CDS	31219383	31219468	.	-	1	Parent=Os06t0731950-01
Chr06	irgsp1_rep	CDS	31219163	31219311	.	-	2	Parent=Os06t0731950-01
Chr06	irgsp1_rep	three_prime_UTR	31219061	31219162	.	-	.	Parent=Os06t0731950-01
Chr06	irgsp1_rep	three_prime_UTR	31218505	31218887	.	-	.	Parent=Os06t0731950-01
Chr06	irgsp1_rep	three_prime_UTR	31217788	31218156	.	-	.	Parent=Os06t0731950-01
Chr06	irgsp1_rep	mRNA	31225756	31226653	.	-	.	ID=Os06t0732000-00;Name=Os06t0732000-00;Locus_id=Os06g0732000;CGSNL Gene Symbol=RPL29;CGSNL Gene Name=RIBOSOMAL PROTEIN L29;Oryzabase Gene Symbol Synonym(s)=OsRPL29;Oryzabase Gene Name Synonym(s)=ribosomal protein L29%2C ribosomal protein large subunit 29;Note=Similar to 60S ribosomal protein L35.;Transcript_evidence=FP092387 (DDBJ);ORF_evidence=NP_001148517.1 (RefSeq);Oryzabase=22201;TENOR=Os06t0732000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr06	irgsp1_rep	CDS	31226262	31226653	.	-	0	Parent=Os06t0732000-00
Chr06	irgsp1_rep	CDS	31226034	31226169	.	-	1	Parent=Os06t0732000-00
Chr06	irgsp1_rep	CDS	31225765	31225884	.	-	0	Parent=Os06t0732000-00
Chr06	irgsp1_rep	three_prime_UTR	31225756	31225764	.	-	.	Parent=Os06t0732000-00
Chr07	irgsp1_rep	mRNA	11648	12983	.	-	.	ID=Os07t0100200-01;Name=Os07t0100200-01;Locus_id=Os07g0100200;CGSNL Gene Symbol=PDX1.3A;CGSNL Gene Name=PYRIDOXINE BIOSYNTHESIS PROTEIN 1.3A;Oryzabase Gene Symbol Synonym(s)=OsPDX1.3a%2C OsPDX1.1%2C PDX1.1;Oryzabase Gene Name Synonym(s)=SOR/SNZ protein%2C pyridoxine synthase%2C PYRIDOXINE BIOSYNTHESIS PROTEIN1.3a%2C Pyridoxal phosphate synthase protein 1.1;Note=Similar to PDX1-like protein 4.;Transcript_evidence=AK073305 (DDBJ%2C Best hit),AK060986 (DDBJ%2C Best hit);ORF_evidence=B7E4V8 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: pyridoxal phosphate biosynthetic process (GO:0042823),Molecular Function: catalytic activity (GO:0003824);InterPro=Vitamin B6 biosynthesis protein (IPR001852),Ribulose-phosphate binding barrel (IPR011060),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J033024J11,006-203-B11;Oryzabase=18247;Expression=AK073305;TENOR=Os07t0100200-01;KEGG=Os07t0100200-01 (EC:4.-.-.-)
Chr07	irgsp1_rep	five_prime_UTR	12894	12983	.	-	.	Parent=Os07t0100200-01
Chr07	irgsp1_rep	CDS	11937	12893	.	-	0	Parent=Os07t0100200-01
Chr07	irgsp1_rep	three_prime_UTR	11648	11936	.	-	.	Parent=Os07t0100200-01
Chr07	irgsp1_rep	mRNA	17519	19474	.	+	.	ID=Os07t0100300-01;Name=Os07t0100300-01;Locus_id=Os07g0100300;CGSNL Gene Symbol=SQD2.1;CGSNL Gene Name=SULFOQUINOVOSYLDIACYLGLYCEROL SYNTHASE 2.1;Oryzabase Gene Symbol Synonym(s)=OsSQD2.1;Oryzabase Gene Name Synonym(s)=sulfoquinovosyl transferase-like protein 2.1%2C Sulfoquinovosyldiacylglycerol synthase 2.1;Note=Conserved hypothetical protein.;Transcript_evidence=AK109623 (DDBJ%2C Best hit);ORF_evidence=Q69LA5 (UniProt);NIAS_FLcDNA=002-138-A12;Oryzabase=21765;TENOR=Os07t0100300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	17519	17710	.	+	.	Parent=Os07t0100300-01
Chr07	irgsp1_rep	CDS	17711	18016	.	+	0	Parent=Os07t0100300-01
Chr07	irgsp1_rep	CDS	18107	18177	.	+	0	Parent=Os07t0100300-01
Chr07	irgsp1_rep	CDS	18269	18386	.	+	1	Parent=Os07t0100300-01
Chr07	irgsp1_rep	CDS	18462	18539	.	+	0	Parent=Os07t0100300-01
Chr07	irgsp1_rep	three_prime_UTR	18540	19474	.	+	.	Parent=Os07t0100300-01
Chr07	irgsp1_rep	mRNA	17520	21402	.	+	.	ID=Os07t0100300-02;Name=Os07t0100300-02;Locus_id=Os07g0100300;RAP-DB Gene Symbol Synonym(s)=SQD2.1;RAP-DB Gene Name Synonym(s)=Sulfoquinovosyltransferase 2.1;CGSNL Gene Symbol=SQD2.1;CGSNL Gene Name=SULFOQUINOVOSYLDIACYLGLYCEROL SYNTHASE 2.1;Oryzabase Gene Symbol Synonym(s)=OsSQD2.1;Oryzabase Gene Name Synonym(s)=sulfoquinovosyl transferase-like protein 2.1%2C Sulfoquinovosyldiacylglycerol synthase 2.1;Note=Sulfoquinovosyltransferase%2C Mediation of flavonoid glycosylation%2C Osmotic stress tolerance;Transcript_evidence=AK066040;ORF_evidence=Q69LA5;InterPro=Glycosyltransferase subfamily 4-like%2C N-terminal domain (IPR028098),Glycosyl transferase%2C family 1 (IPR001296);NIAS_FLcDNA=J013048L15;Manual Curation=February 10%2C 2020;Literature_PMID=30942482;Oryzabase=21765;TENOR=Os07t0100300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=chloroplast (GO:0009507), cytoplasm (GO:0005737)
Chr07	irgsp1_rep	five_prime_UTR	17520	17710	.	+	.	Parent=Os07t0100300-02
Chr07	irgsp1_rep	CDS	17711	18016	.	+	0	Parent=Os07t0100300-02
Chr07	irgsp1_rep	CDS	18107	18177	.	+	0	Parent=Os07t0100300-02
Chr07	irgsp1_rep	CDS	18269	18386	.	+	1	Parent=Os07t0100300-02
Chr07	irgsp1_rep	CDS	18462	18535	.	+	0	Parent=Os07t0100300-02
Chr07	irgsp1_rep	CDS	18929	18984	.	+	1	Parent=Os07t0100300-02
Chr07	irgsp1_rep	CDS	19064	19147	.	+	2	Parent=Os07t0100300-02
Chr07	irgsp1_rep	CDS	19259	19346	.	+	2	Parent=Os07t0100300-02
Chr07	irgsp1_rep	CDS	19511	19588	.	+	1	Parent=Os07t0100300-02
Chr07	irgsp1_rep	CDS	19873	19929	.	+	1	Parent=Os07t0100300-02
Chr07	irgsp1_rep	CDS	20396	20903	.	+	1	Parent=Os07t0100300-02
Chr07	irgsp1_rep	three_prime_UTR	20904	21402	.	+	.	Parent=Os07t0100300-02
Chr07	irgsp1_rep	mRNA	19064	21375	.	+	.	ID=Os07t0100300-03;Name=Os07t0100300-03;Locus_id=Os07g0100300;CGSNL Gene Symbol=SQD2.1;CGSNL Gene Name=SULFOQUINOVOSYLDIACYLGLYCEROL SYNTHASE 2.1;Oryzabase Gene Symbol Synonym(s)=OsSQD2.1;Oryzabase Gene Name Synonym(s)=sulfoquinovosyl transferase-like protein 2.1%2C Sulfoquinovosyldiacylglycerol synthase 2.1;Note=Similar to predicted protein.;Transcript_evidence=AK061192 (DDBJ%2C Best hit);ORF_evidence=NP_568085.2 (RefSeq);GO=Biological Process: biosynthetic process (GO:0009058);InterPro=Glycosyl transferase%2C family 1 (IPR001296);NIAS_FLcDNA=006-209-F08;Oryzabase=21765;Expression=AK061192;TENOR=Os07t0100300-03;KEGG=Os07t0100300-03 (EC:2.4.1.-)
Chr07	irgsp1_rep	five_prime_UTR	19064	19065	.	+	.	Parent=Os07t0100300-03
Chr07	irgsp1_rep	CDS	19066	19147	.	+	0	Parent=Os07t0100300-03
Chr07	irgsp1_rep	CDS	19259	19346	.	+	2	Parent=Os07t0100300-03
Chr07	irgsp1_rep	CDS	19511	19588	.	+	1	Parent=Os07t0100300-03
Chr07	irgsp1_rep	CDS	19873	19929	.	+	1	Parent=Os07t0100300-03
Chr07	irgsp1_rep	CDS	20396	20903	.	+	1	Parent=Os07t0100300-03
Chr07	irgsp1_rep	three_prime_UTR	20904	21375	.	+	.	Parent=Os07t0100300-03
Chr07	irgsp1_rep	mRNA	36140	42057	.	+	.	ID=Os07t0100500-01;Name=Os07t0100500-01;Locus_id=Os07g0100500;Note=Conserved hypothetical protein.;Transcript_evidence=AK067928 (DDBJ%2C Best hit);ORF_evidence=A3BFP6 (UniProt);NIAS_FLcDNA=J013128H10;TENOR=Os07t0100500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	36140	36299	.	+	.	Parent=Os07t0100500-01
Chr07	irgsp1_rep	CDS	36300	36533	.	+	0	Parent=Os07t0100500-01
Chr07	irgsp1_rep	CDS	36617	36732	.	+	0	Parent=Os07t0100500-01
Chr07	irgsp1_rep	CDS	38222	38225	.	+	1	Parent=Os07t0100500-01
Chr07	irgsp1_rep	three_prime_UTR	38226	38268	.	+	.	Parent=Os07t0100500-01
Chr07	irgsp1_rep	three_prime_UTR	40044	40287	.	+	.	Parent=Os07t0100500-01
Chr07	irgsp1_rep	three_prime_UTR	40451	41578	.	+	.	Parent=Os07t0100500-01
Chr07	irgsp1_rep	three_prime_UTR	41657	42057	.	+	.	Parent=Os07t0100500-01
Chr07	irgsp1_rep	mRNA	38203	42289	.	+	.	ID=Os07t0100500-02;Name=Os07t0100500-02;Locus_id=Os07g0100500;Note=Conserved hypothetical protein.;Transcript_evidence=AK066470 (DDBJ%2C Best hit);ORF_evidence=A3BFP6 (UniProt);NIAS_FLcDNA=J013066L17;Expression=AK066470;TENOR=Os07t0100500-02;KEGG=Os07t0100500-02
Chr07	irgsp1_rep	five_prime_UTR	38203	38268	.	+	.	Parent=Os07t0100500-02
Chr07	irgsp1_rep	five_prime_UTR	40044	40080	.	+	.	Parent=Os07t0100500-02
Chr07	irgsp1_rep	CDS	40081	40287	.	+	0	Parent=Os07t0100500-02
Chr07	irgsp1_rep	CDS	40451	41578	.	+	0	Parent=Os07t0100500-02
Chr07	irgsp1_rep	CDS	41657	41833	.	+	0	Parent=Os07t0100500-02
Chr07	irgsp1_rep	three_prime_UTR	41834	42289	.	+	.	Parent=Os07t0100500-02
Chr07	irgsp1_rep	mRNA	42657	44528	.	+	.	ID=Os07t0100600-01;Name=Os07t0100600-01;Locus_id=Os07g0100600;CGSNL Gene Symbol=PTR1;CGSNL Gene Name=PROTEIN TRANSPORTER 1;Oryzabase Gene Symbol Synonym(s)=OsPTR1%2C OsNPF8.2%2C NPF8.2;Oryzabase Gene Name Synonym(s)=NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 8.2;Note=Similar to Peptide transporter.;Transcript_evidence=AK100112 (DDBJ%2C Best hit),AK106932 (DDBJ%2C Best hit);ORF_evidence=O48542 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),PTR2 family proton/oligopeptide symporter%2C conserved site (IPR018456);NIAS_FLcDNA=J023006A18,002-119-C04;Oryzabase=8909;TENOR=Os07t0100600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	42657	42686	.	+	.	Parent=Os07t0100600-01
Chr07	irgsp1_rep	CDS	42687	44405	.	+	0	Parent=Os07t0100600-01
Chr07	irgsp1_rep	three_prime_UTR	44406	44528	.	+	.	Parent=Os07t0100600-01
Chr07	irgsp1_rep	mRNA	48787	53212	.	-	.	ID=Os07t0100800-01;Name=Os07t0100800-01;Locus_id=Os07g0100800;RAP-DB Gene Symbol Synonym(s)=OsProT3;RAP-DB Gene Name Synonym(s)=Proline transporter 3;Oryzabase Gene Symbol Synonym(s)=OsProT3%2C ProT3;Oryzabase Gene Name Synonym(s)=proline transporter 3;Note=Proline (Pro) and &gamma%3B-aminobutyric acid (GABA) transporter%2C Stress tolerance%2C Cadmium stress tolerance;Transcript_evidence=AK066298;ORF_evidence=Q69LA1;InterPro=Amino acid transporter%2C transmembrane domain (IPR013057);NIAS_FLcDNA=J013062C01;Manual Curation=November 12%2C 2019;Literature_PMID=31707526;Oryzabase=18514;Expression=AK066298;TENOR=Os07t0100800-01;KEGG=Os07t0100800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=plasma membrane (GO:0005886)
Chr07	irgsp1_rep	five_prime_UTR	53140	53212	.	-	.	Parent=Os07t0100800-01
Chr07	irgsp1_rep	CDS	53067	53139	.	-	0	Parent=Os07t0100800-01
Chr07	irgsp1_rep	CDS	50807	51031	.	-	2	Parent=Os07t0100800-01
Chr07	irgsp1_rep	CDS	50465	50559	.	-	2	Parent=Os07t0100800-01
Chr07	irgsp1_rep	CDS	50031	50220	.	-	0	Parent=Os07t0100800-01
Chr07	irgsp1_rep	CDS	49794	49918	.	-	2	Parent=Os07t0100800-01
Chr07	irgsp1_rep	CDS	49496	49711	.	-	0	Parent=Os07t0100800-01
Chr07	irgsp1_rep	CDS	48999	49379	.	-	0	Parent=Os07t0100800-01
Chr07	irgsp1_rep	three_prime_UTR	48787	48998	.	-	.	Parent=Os07t0100800-01
Chr07	irgsp1_rep	mRNA	56872	58217	.	-	.	ID=Os07t0100900-01;Name=Os07t0100900-01;Locus_id=Os07g0100900;Note=Legume lectin%2C beta domain containing protein.;Transcript_evidence=AK109492 (DDBJ%2C Best hit);ORF_evidence=A2YHA0 (UniProt);InterPro=Concanavalin A-like lectin/glucanase (IPR008985),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320);NIAS_FLcDNA=001-205-C11;Expression=AK109492;TENOR=Os07t0100900-01;KEGG=Os07t0100900-01
Chr07	irgsp1_rep	five_prime_UTR	58096	58217	.	-	.	Parent=Os07t0100900-01
Chr07	irgsp1_rep	CDS	57178	58095	.	-	0	Parent=Os07t0100900-01
Chr07	irgsp1_rep	three_prime_UTR	56872	57177	.	-	.	Parent=Os07t0100900-01
Chr07	irgsp1_rep	mRNA	58808	60650	.	-	.	ID=Os07t0101000-00;Name=Os07t0101000-00;Locus_id=Os07g0101000;CGSNL Gene Symbol=LAC16;CGSNL Gene Name=LACCASE 16;Oryzabase Gene Symbol Synonym(s)=OsLAC16;Oryzabase Gene Name Synonym(s)=laccase 16;Note=Cupredoxin domain containing protein.;Transcript_evidence=AK367576 (DDBJ);ORF_evidence=Q69L99 (UniProt);GO=Biological Process: lignin catabolic process (GO:0046274),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: apoplast (GO:0048046),Molecular Function: copper ion binding (GO:0005507),Molecular Function: laccase activity (GO:0008471),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Multicopper oxidase%2C type 1 (IPR001117),Multicopper oxidase%2C copper-binding site (IPR002355),Cupredoxin (IPR008972),Multicopper oxidase%2C type 2 (IPR011706),Multicopper oxidase%2C type 3 (IPR011707),Laccase (IPR017761);Oryzabase=21617;TENOR=Os07t0101000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	60537	60650	.	-	0	Parent=Os07t0101000-00
Chr07	irgsp1_rep	CDS	58820	60457	.	-	0	Parent=Os07t0101000-00
Chr07	irgsp1_rep	three_prime_UTR	58808	58819	.	-	.	Parent=Os07t0101000-00
Chr07	irgsp1_rep	mRNA	66915	67766	.	-	.	ID=Os07t0101101-01;Name=Os07t0101101-01;Locus_id=Os07g0101101;Note=Conserved hypothetical protein.;Transcript_evidence=AK243587 (DDBJ%2C Best hit);ORF_evidence=NP_001175015.1 (RefSeq);NIAS_FLcDNA=J100083B04;TENOR=Os07t0101101-01;KEGG=Os07t0101101-01
Chr07	irgsp1_rep	five_prime_UTR	67652	67766	.	-	.	Parent=Os07t0101101-01
Chr07	irgsp1_rep	CDS	67540	67651	.	-	0	Parent=Os07t0101101-01
Chr07	irgsp1_rep	CDS	67313	67452	.	-	2	Parent=Os07t0101101-01
Chr07	irgsp1_rep	three_prime_UTR	66915	67312	.	-	.	Parent=Os07t0101101-01
Chr07	irgsp1_rep	mRNA	72958	75621	.	+	.	ID=Os07t0101200-01;Name=Os07t0101200-01;Locus_id=Os07g0101200;Oryzabase Gene Symbol Synonym(s)=OsbHLH188%2C bHLH188;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 188;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK073590 (DDBJ%2C Best hit);ORF_evidence=B9FV32 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033048N09;Oryzabase=22858;Expression=AK073590;TENOR=Os07t0101200-01;KEGG=Os07t0101200-01
Chr07	irgsp1_rep	five_prime_UTR	72958	73152	.	+	.	Parent=Os07t0101200-01
Chr07	irgsp1_rep	CDS	73153	75369	.	+	0	Parent=Os07t0101200-01
Chr07	irgsp1_rep	three_prime_UTR	75370	75621	.	+	.	Parent=Os07t0101200-01
Chr07	irgsp1_rep	mRNA	76110	82431	.	+	.	ID=Os07t0101300-01;Name=Os07t0101300-01;Locus_id=Os07g0101300;Oryzabase Gene Symbol Synonym(s)=OsbHLH188%2C bHLH188;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 188;Note=Conserved hypothetical protein.;Transcript_evidence=AK068020 (DDBJ%2C Best hit);ORF_evidence=B9FV32 (UniProt);NIAS_FLcDNA=J013134B16;Oryzabase=22858;TENOR=Os07t0101300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	76110	77090	.	+	.	Parent=Os07t0101300-01
Chr07	irgsp1_rep	five_prime_UTR	78005	78131	.	+	.	Parent=Os07t0101300-01
Chr07	irgsp1_rep	five_prime_UTR	78297	78659	.	+	.	Parent=Os07t0101300-01
Chr07	irgsp1_rep	CDS	78660	78763	.	+	0	Parent=Os07t0101300-01
Chr07	irgsp1_rep	CDS	78916	79116	.	+	1	Parent=Os07t0101300-01
Chr07	irgsp1_rep	CDS	79463	79541	.	+	1	Parent=Os07t0101300-01
Chr07	irgsp1_rep	CDS	79603	79678	.	+	0	Parent=Os07t0101300-01
Chr07	irgsp1_rep	CDS	79788	79847	.	+	2	Parent=Os07t0101300-01
Chr07	irgsp1_rep	CDS	80087	80136	.	+	2	Parent=Os07t0101300-01
Chr07	irgsp1_rep	three_prime_UTR	80137	81271	.	+	.	Parent=Os07t0101300-01
Chr07	irgsp1_rep	three_prime_UTR	81407	81484	.	+	.	Parent=Os07t0101300-01
Chr07	irgsp1_rep	three_prime_UTR	81586	81688	.	+	.	Parent=Os07t0101300-01
Chr07	irgsp1_rep	three_prime_UTR	81775	81902	.	+	.	Parent=Os07t0101300-01
Chr07	irgsp1_rep	three_prime_UTR	82134	82431	.	+	.	Parent=Os07t0101300-01
Chr07	irgsp1_rep	mRNA	82413	85882	.	-	.	ID=Os07t0101400-01;Name=Os07t0101400-01;Locus_id=Os07g0101400;Oryzabase Gene Symbol Synonym(s)=OsMB9%2C MB9;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 9%2C MDC protein with a BTB domain 9%2C MDC protein having BTB domain 9;Note=Kelch related domain containing protein.;Transcript_evidence=AK069837 (DDBJ%2C Best hit);ORF_evidence=B4FZN5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);NIAS_FLcDNA=J023031F07;Oryzabase=21203;Expression=AK069837;TENOR=Os07t0101400-01;KEGG=Os07t0101400-01
Chr07	irgsp1_rep	five_prime_UTR	85645	85882	.	-	.	Parent=Os07t0101400-01
Chr07	irgsp1_rep	CDS	85280	85644	.	-	0	Parent=Os07t0101400-01
Chr07	irgsp1_rep	CDS	84841	85189	.	-	1	Parent=Os07t0101400-01
Chr07	irgsp1_rep	CDS	84345	84621	.	-	0	Parent=Os07t0101400-01
Chr07	irgsp1_rep	CDS	82696	82892	.	-	2	Parent=Os07t0101400-01
Chr07	irgsp1_rep	three_prime_UTR	82413	82695	.	-	.	Parent=Os07t0101400-01
Chr07	irgsp1_rep	mRNA	88419	90483	.	+	.	ID=Os07t0101500-01;Name=Os07t0101500-01;Locus_id=Os07g0101500;Oryzabase Gene Symbol Synonym(s)=OsGL1-8%2C GL1-8;Oryzabase Gene Name Synonym(s)=Glossy1-homologous gene 8;Note=Similar to Sterol 4-alpha-methyl-oxidase (Fragment).;Transcript_evidence=AK059667 (DDBJ%2C Best hit),AK071749 (DDBJ%2C Best hit);ORF_evidence=B6TCQ7 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Fatty acid hydroxylase (IPR006694);NIAS_FLcDNA=001-031-F03,J023112L07;Oryzabase=15282;Expression=AK059667;TENOR=Os07t0101500-01;KEGG=Os07t0101500-01 (EC:1.14.13.72)
Chr07	irgsp1_rep	five_prime_UTR	88419	88480	.	+	.	Parent=Os07t0101500-01
Chr07	irgsp1_rep	CDS	88481	88654	.	+	0	Parent=Os07t0101500-01
Chr07	irgsp1_rep	CDS	89162	89307	.	+	0	Parent=Os07t0101500-01
Chr07	irgsp1_rep	CDS	89417	89536	.	+	1	Parent=Os07t0101500-01
Chr07	irgsp1_rep	CDS	89625	89837	.	+	1	Parent=Os07t0101500-01
Chr07	irgsp1_rep	CDS	89934	90014	.	+	1	Parent=Os07t0101500-01
Chr07	irgsp1_rep	CDS	90134	90206	.	+	1	Parent=Os07t0101500-01
Chr07	irgsp1_rep	three_prime_UTR	90207	90483	.	+	.	Parent=Os07t0101500-01
Chr07	irgsp1_rep	mRNA	109286	110520	.	+	.	ID=Os07t0101800-00;Name=Os07t0101800-00;Locus_id=Os07g0101800;Note=Hypothetical conserved gene.;Transcript_evidence=CT836111 (DDBJ%2C Best hit);ORF_evidence=NP_001151975.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);TENOR=Os07t0101800-00;KEGG=Os07t0101800-00
Chr07	irgsp1_rep	five_prime_UTR	109286	109322	.	+	.	Parent=Os07t0101800-00
Chr07	irgsp1_rep	CDS	109323	109649	.	+	0	Parent=Os07t0101800-00
Chr07	irgsp1_rep	CDS	109665	110186	.	+	0	Parent=Os07t0101800-00
Chr07	irgsp1_rep	three_prime_UTR	110187	110520	.	+	.	Parent=Os07t0101800-00
Chr07	irgsp1_rep	mRNA	115444	117742	.	-	.	ID=Os07t0102000-01;Name=Os07t0102000-01;Locus_id=Os07g0102000;Note=Tetraacyldisaccharide 4'-kinase domain containing protein.;Transcript_evidence=AK070220 (DDBJ%2C Best hit);ORF_evidence=B9FV35 (UniProt);GO=Biological Process: lipid A biosynthetic process (GO:0009245),Molecular Function: ATP binding (GO:0005524),Molecular Function: tetraacyldisaccharide 4'-kinase activity (GO:0009029);InterPro=Tetraacyldisaccharide 4'-kinase (IPR003758);NIAS_FLcDNA=J023046L04;TENOR=Os07t0102000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	117739	117742	.	-	.	Parent=Os07t0102000-01
Chr07	irgsp1_rep	CDS	117412	117738	.	-	0	Parent=Os07t0102000-01
Chr07	irgsp1_rep	CDS	116930	117238	.	-	0	Parent=Os07t0102000-01
Chr07	irgsp1_rep	three_prime_UTR	115917	116929	.	-	.	Parent=Os07t0102000-01
Chr07	irgsp1_rep	three_prime_UTR	115444	115816	.	-	.	Parent=Os07t0102000-01
Chr07	irgsp1_rep	mRNA	122255	127928	.	+	.	ID=Os07t0102100-01;Name=Os07t0102100-01;Locus_id=Os07g0102100;CGSNL Gene Symbol=HAK22;CGSNL Gene Name=HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 22;Oryzabase Gene Symbol Synonym(s)=OsHAK22;Oryzabase Gene Name Synonym(s)=High-affinity Potassium(K+) Transporter 22%2C Potassium transporter 22;Note=Similar to Potassium transporter 22.;Transcript_evidence=AK066544 (DDBJ%2C Best hit);ORF_evidence=Q69L87 (UniProt);GO=Biological Process: potassium ion transmembrane transport (GO:0071805),Cellular Component: membrane (GO:0016020),Molecular Function: potassium ion transmembrane transporter activity (GO:0015079);InterPro=K+ potassium transporter (IPR003855);NIAS_FLcDNA=J013069I08;Oryzabase=8676;Expression=AK066544;TENOR=Os07t0102100-01;KEGG=Os07t0102100-01
Chr07	irgsp1_rep	five_prime_UTR	122255	122377	.	+	.	Parent=Os07t0102100-01
Chr07	irgsp1_rep	CDS	122378	123098	.	+	0	Parent=Os07t0102100-01
Chr07	irgsp1_rep	CDS	125621	126933	.	+	2	Parent=Os07t0102100-01
Chr07	irgsp1_rep	three_prime_UTR	126934	127928	.	+	.	Parent=Os07t0102100-01
Chr07	irgsp1_rep	mRNA	122292	127934	.	+	.	ID=Os07t0102100-02;Name=Os07t0102100-02;Locus_id=Os07g0102100;CGSNL Gene Symbol=HAK22;CGSNL Gene Name=HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 22;Oryzabase Gene Symbol Synonym(s)=OsHAK22;Oryzabase Gene Name Synonym(s)=High-affinity Potassium(K+) Transporter 22%2C Potassium transporter 22;Note=Similar to Potassium transporter 1 (OsHAK1). Splice isoform 2.;Transcript_evidence=AK099800 (DDBJ%2C Best hit);ORF_evidence=Q69L87 (UniProt);GO=Biological Process: potassium ion transmembrane transport (GO:0071805),Cellular Component: membrane (GO:0016020),Molecular Function: potassium ion transmembrane transporter activity (GO:0015079);InterPro=K+ potassium transporter (IPR003855);NIAS_FLcDNA=J013097P15;Oryzabase=8676;Expression=AK099800;TENOR=Os07t0102100-02;KEGG=Os07t0102100-02
Chr07	irgsp1_rep	five_prime_UTR	122292	122377	.	+	.	Parent=Os07t0102100-02
Chr07	irgsp1_rep	CDS	122378	123098	.	+	0	Parent=Os07t0102100-02
Chr07	irgsp1_rep	CDS	125616	127057	.	+	2	Parent=Os07t0102100-02
Chr07	irgsp1_rep	CDS	127268	127477	.	+	0	Parent=Os07t0102100-02
Chr07	irgsp1_rep	three_prime_UTR	127478	127934	.	+	.	Parent=Os07t0102100-02
Chr07	irgsp1_rep	mRNA	126296	127477	.	-	.	ID=Os07t0102150-00;Name=Os07t0102150-00;Locus_id=Os07g0102150;Note=Hypothetical protein.;Transcript_evidence=EU967027 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0102150-00
Chr07	irgsp1_rep	five_prime_UTR	127110	127477	.	-	.	Parent=Os07t0102150-00
Chr07	irgsp1_rep	CDS	127065	127109	.	-	0	Parent=Os07t0102150-00
Chr07	irgsp1_rep	CDS	126296	126871	.	-	0	Parent=Os07t0102150-00
Chr07	irgsp1_rep	mRNA	128713	131371	.	-	.	ID=Os07t0102200-01;Name=Os07t0102200-01;Locus_id=Os07g0102200;Oryzabase Gene Symbol Synonym(s)=OsSTA184;Note=Conserved hypothetical protein.;Transcript_evidence=AK121572 (DDBJ%2C Best hit);ORF_evidence=A3BFR0 (UniProt);NIAS_FLcDNA=J033035N11;Oryzabase=19465;Expression=AK121572;TENOR=Os07t0102200-01;KEGG=Os07t0102200-01
Chr07	irgsp1_rep	five_prime_UTR	131233	131371	.	-	.	Parent=Os07t0102200-01
Chr07	irgsp1_rep	CDS	131047	131232	.	-	0	Parent=Os07t0102200-01
Chr07	irgsp1_rep	CDS	130240	130365	.	-	0	Parent=Os07t0102200-01
Chr07	irgsp1_rep	CDS	128855	130156	.	-	0	Parent=Os07t0102200-01
Chr07	irgsp1_rep	three_prime_UTR	128713	128854	.	-	.	Parent=Os07t0102200-01
Chr07	irgsp1_rep	mRNA	134173	143578	.	-	.	ID=Os07t0102300-01;Name=Os07t0102300-01;Locus_id=Os07g0102300;RAP-DB Gene Symbol Synonym(s)=SRL1%2C CLD1;RAP-DB Gene Name Synonym(s)=SEMI-ROLLED LEAF 1%2C SEMI-ROLLED LEAF1%2C curled leaf and dwarf 1;CGSNL Gene Symbol=SRL1;CGSNL Gene Name=SEMI-ROLLED LEAF 1;Oryzabase Gene Symbol Synonym(s)=OsSRL1%2C CLD1/SRL1%2C CLD1%2C OsCLD1;Oryzabase Gene Name Synonym(s)=SEMI-ROLLED LEAF1%2C curled leaf and dwarf 1;Note=Glycophosphatidylinositol (GPI)-anchored membrane protein%2C Regulation of leaf rolling%2C Maintenance of cell wall formation%2C epidermal integrity and water homeostasis;Transcript_evidence=AK101907;ORF_evidence=Q0D977;NIAS_FLcDNA=J033071E12;Manual Curation=December 19%2C 2017;Literature_PMID=28960566,22715111;Oryzabase=20518;TENOR=Os07t0102300-01;KEGG=Os07t0102300-01
Chr07	irgsp1_rep	five_prime_UTR	143413	143578	.	-	.	Parent=Os07t0102300-01
Chr07	irgsp1_rep	CDS	143364	143412	.	-	0	Parent=Os07t0102300-01
Chr07	irgsp1_rep	CDS	143034	143198	.	-	2	Parent=Os07t0102300-01
Chr07	irgsp1_rep	CDS	142324	142908	.	-	2	Parent=Os07t0102300-01
Chr07	irgsp1_rep	CDS	141098	141343	.	-	2	Parent=Os07t0102300-01
Chr07	irgsp1_rep	CDS	140932	140943	.	-	2	Parent=Os07t0102300-01
Chr07	irgsp1_rep	CDS	135513	135656	.	-	2	Parent=Os07t0102300-01
Chr07	irgsp1_rep	CDS	134780	134824	.	-	2	Parent=Os07t0102300-01
Chr07	irgsp1_rep	CDS	134549	134628	.	-	2	Parent=Os07t0102300-01
Chr07	irgsp1_rep	three_prime_UTR	134173	134548	.	-	.	Parent=Os07t0102300-01
Chr07	irgsp1_rep	mRNA	147148	150184	.	-	.	ID=Os07t0102400-01;Name=Os07t0102400-01;Locus_id=Os07g0102400;Note=Protein of unknown function DUF1084 family protein.;Transcript_evidence=AK066373 (DDBJ%2C Best hit);ORF_evidence=NP_001149396.1 (RefSeq);InterPro=Domain of unknown function DUF1084 (IPR009457);NIAS_FLcDNA=J013062G10;Expression=AK066373;TENOR=Os07t0102400-01;KEGG=Os07t0102400-01
Chr07	irgsp1_rep	five_prime_UTR	150100	150184	.	-	.	Parent=Os07t0102400-01
Chr07	irgsp1_rep	CDS	149956	150099	.	-	0	Parent=Os07t0102400-01
Chr07	irgsp1_rep	CDS	149746	149836	.	-	0	Parent=Os07t0102400-01
Chr07	irgsp1_rep	CDS	149544	149596	.	-	2	Parent=Os07t0102400-01
Chr07	irgsp1_rep	CDS	149363	149457	.	-	0	Parent=Os07t0102400-01
Chr07	irgsp1_rep	CDS	149207	149276	.	-	1	Parent=Os07t0102400-01
Chr07	irgsp1_rep	CDS	148900	149018	.	-	0	Parent=Os07t0102400-01
Chr07	irgsp1_rep	CDS	148729	148792	.	-	1	Parent=Os07t0102400-01
Chr07	irgsp1_rep	CDS	147967	148020	.	-	0	Parent=Os07t0102400-01
Chr07	irgsp1_rep	CDS	147616	147693	.	-	0	Parent=Os07t0102400-01
Chr07	irgsp1_rep	CDS	147406	147498	.	-	0	Parent=Os07t0102400-01
Chr07	irgsp1_rep	three_prime_UTR	147148	147405	.	-	.	Parent=Os07t0102400-01
Chr07	irgsp1_rep	mRNA	154906	158601	.	-	.	ID=Os07t0102500-01;Name=Os07t0102500-01;Locus_id=Os07g0102500;Note=Lupus La protein family protein.;Transcript_evidence=AK100327 (DDBJ%2C Best hit),AK100796 (DDBJ%2C Best hit);ORF_evidence=B8B6I7 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Cellular Component: nucleus (GO:0005634),Cellular Component: ribonucleoprotein complex (GO:0030529),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723);InterPro=RNA recognition motif domain (IPR000504),Lupus La protein (IPR002344),RNA-binding protein Lupus La (IPR006630),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023079N22,J023121F13;Expression=AK100327;TENOR=Os07t0102500-01;KEGG=Os07t0102500-01
Chr07	irgsp1_rep	five_prime_UTR	158516	158601	.	-	.	Parent=Os07t0102500-01
Chr07	irgsp1_rep	CDS	158068	158515	.	-	0	Parent=Os07t0102500-01
Chr07	irgsp1_rep	CDS	157827	157921	.	-	2	Parent=Os07t0102500-01
Chr07	irgsp1_rep	CDS	157606	157677	.	-	0	Parent=Os07t0102500-01
Chr07	irgsp1_rep	CDS	157365	157444	.	-	0	Parent=Os07t0102500-01
Chr07	irgsp1_rep	CDS	157104	157185	.	-	1	Parent=Os07t0102500-01
Chr07	irgsp1_rep	CDS	155875	155922	.	-	0	Parent=Os07t0102500-01
Chr07	irgsp1_rep	CDS	155673	155741	.	-	0	Parent=Os07t0102500-01
Chr07	irgsp1_rep	CDS	155119	155541	.	-	0	Parent=Os07t0102500-01
Chr07	irgsp1_rep	three_prime_UTR	154906	155118	.	-	.	Parent=Os07t0102500-01
Chr07	irgsp1_rep	mRNA	182515	183243	.	-	.	ID=Os07t0103000-01;Name=Os07t0103000-01;Locus_id=Os07g0103000;Note=Similar to GRF zinc finger family protein%2C expressed.;Transcript_evidence=AK063123 (DDBJ%2C Best hit);ORF_evidence=Q7XDU8 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C GRF-type (IPR010666);NIAS_FLcDNA=001-111-E10;Expression=AK063123;TENOR=Os07t0103000-01;KEGG=Os07t0103000-01
Chr07	irgsp1_rep	CDS	183052	183243	.	-	0	Parent=Os07t0103000-01
Chr07	irgsp1_rep	CDS	182909	182941	.	-	0	Parent=Os07t0103000-01
Chr07	irgsp1_rep	three_prime_UTR	182515	182908	.	-	.	Parent=Os07t0103000-01
Chr07	irgsp1_rep	mRNA	191053	196429	.	+	.	ID=Os07t0103100-01;Name=Os07t0103100-01;Locus_id=Os07g0103100;Oryzabase Gene Symbol Synonym(s)=OsGLR3.6%2C GLR3.6%2C OsGLR3.4%2C GLR3.4;Oryzabase Gene Name Synonym(s)=Glutamate receptor homolog 3.6%2C GLUTAMATE RECEPTOR-LIKE 3.4;Note=Similar to Glutamate receptor 3.4 precursor (Ligand-gated ion channel 3.4) (AtGLR4). Splice isoform 2.;Transcript_evidence=AK122009 (DDBJ%2C Best hit);ORF_evidence=A2YHB3 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: G-protein coupled receptor protein signaling pathway (GO:0007186),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Cellular Component: outer membrane-bounded periplasmic space (GO:0030288),Molecular Function: GABA-B receptor activity (GO:0004965),Molecular Function: ionotropic glutamate receptor activity (GO:0004970),Molecular Function: transporter activity (GO:0005215),Molecular Function: extracellular-glutamate-gated ion channel activity (GO:0005234);InterPro=Ionotropic glutamate receptor (IPR001320),Extracellular solute-binding protein%2C family 3 (IPR001638),Extracellular ligand-binding receptor (IPR001828),GPCR%2C family 3%2C gamma-aminobutyric acid receptor%2C type B (IPR002455),Ionotropic glutamate receptor%2C plant (IPR017103);NIAS_FLcDNA=J033111F13;Oryzabase=15503;Expression=AK122009;TENOR=Os07t0103100-01;KEGG=Os07t0103100-01
Chr07	irgsp1_rep	five_prime_UTR	191053	191567	.	+	.	Parent=Os07t0103100-01
Chr07	irgsp1_rep	CDS	191568	191829	.	+	0	Parent=Os07t0103100-01
Chr07	irgsp1_rep	CDS	193475	195534	.	+	2	Parent=Os07t0103100-01
Chr07	irgsp1_rep	CDS	195620	196168	.	+	0	Parent=Os07t0103100-01
Chr07	irgsp1_rep	three_prime_UTR	196169	196429	.	+	.	Parent=Os07t0103100-01
Chr07	irgsp1_rep	mRNA	196515	199802	.	-	.	ID=Os07t0103200-01;Name=Os07t0103200-01;Locus_id=Os07g0103200;Note=Similar to DDRGK domain-containing protein 1.;Transcript_evidence=AK318605 (DDBJ%2C Best hit);ORF_evidence=Q8LH03 (UniProt);InterPro=DDRGK domain containing protein (IPR019153);NIAS_FLcDNA=J100077E13;TENOR=Os07t0103200-01;KEGG=Os07t0103200-01
Chr07	irgsp1_rep	five_prime_UTR	199779	199802	.	-	.	Parent=Os07t0103200-01
Chr07	irgsp1_rep	CDS	199653	199778	.	-	0	Parent=Os07t0103200-01
Chr07	irgsp1_rep	CDS	199471	199579	.	-	0	Parent=Os07t0103200-01
Chr07	irgsp1_rep	CDS	199295	199395	.	-	2	Parent=Os07t0103200-01
Chr07	irgsp1_rep	CDS	198762	198863	.	-	0	Parent=Os07t0103200-01
Chr07	irgsp1_rep	CDS	198519	198680	.	-	0	Parent=Os07t0103200-01
Chr07	irgsp1_rep	CDS	197985	198041	.	-	0	Parent=Os07t0103200-01
Chr07	irgsp1_rep	CDS	197242	197278	.	-	0	Parent=Os07t0103200-01
Chr07	irgsp1_rep	CDS	196879	197093	.	-	2	Parent=Os07t0103200-01
Chr07	irgsp1_rep	three_prime_UTR	196515	196878	.	-	.	Parent=Os07t0103200-01
Chr07	irgsp1_rep	mRNA	213778	219543	.	+	.	ID=Os07t0103500-01;Name=Os07t0103500-01;Locus_id=Os07g0103500;CGSNL Gene Symbol=GA2OX5;CGSNL Gene Name=GIBBERELLIN 2-OXIDASE 5;Oryzabase Gene Symbol Synonym(s)=OsGA2ox5%2C 2-ODD32%2C Os2-ODD32%2C 2ODD32%2C Os2ODD32;Oryzabase Gene Name Synonym(s)=GA 2-oxidase 5%2C 2-oxoglutarate-dependent dioxygenase 32;Note=2OG-Fe(II) oxygenase domain containing protein.;Transcript_evidence=AK106859 (DDBJ%2C Best hit);ORF_evidence=A2YHB5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=002-118-C01;Oryzabase=9081;Expression=AK106859;TENOR=Os07t0103500-01;KEGG=Os07t0103500-01
Chr07	irgsp1_rep	five_prime_UTR	213778	214121	.	+	.	Parent=Os07t0103500-01
Chr07	irgsp1_rep	five_prime_UTR	218159	218213	.	+	.	Parent=Os07t0103500-01
Chr07	irgsp1_rep	CDS	218214	219239	.	+	0	Parent=Os07t0103500-01
Chr07	irgsp1_rep	three_prime_UTR	219240	219543	.	+	.	Parent=Os07t0103500-01
Chr07	irgsp1_rep	mRNA	218176	219252	.	-	.	ID=Os07t0103600-01;Name=Os07t0103600-01;Locus_id=Os07g0103600;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK109056 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-154-E10;Expression=AK109056;TENOR=Os07t0103600-01;KEGG=Os07t0103600-01
Chr07	irgsp1_rep	five_prime_UTR	219141	219252	.	-	.	Parent=Os07t0103600-01
Chr07	irgsp1_rep	CDS	218211	219140	.	-	0	Parent=Os07t0103600-01
Chr07	irgsp1_rep	three_prime_UTR	218176	218210	.	-	.	Parent=Os07t0103600-01
Chr07	irgsp1_rep	mRNA	236594	237329	.	+	.	ID=Os07t0104100-01;Name=Os07t0104100-01;Locus_id=Os07g0104100;Oryzabase Gene Symbol Synonym(s)=prx97%2C Osprx97;Oryzabase Gene Name Synonym(s)=class III peroxidase 97;Note=Similar to Class III peroxidase 97.;Transcript_evidence=AK107894 (DDBJ%2C Best hit);ORF_evidence=Q5U1J6 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793);NIAS_FLcDNA=002-134-E12;Oryzabase=14620;TENOR=Os07t0104100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	236594	236594	.	+	.	Parent=Os07t0104100-01
Chr07	irgsp1_rep	CDS	236595	237104	.	+	0	Parent=Os07t0104100-01
Chr07	irgsp1_rep	three_prime_UTR	237105	237329	.	+	.	Parent=Os07t0104100-01
Chr07	irgsp1_rep	mRNA	240466	240945	.	+	.	ID=Os07t0104233-00;Name=Os07t0104233-00;Locus_id=Os07g0104233;Note=Similar to peroxidase 1.;Transcript_evidence=DQ531618 (DDBJ);ORF_evidence=NP_001146942.1 (RefSeq);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidase%2C active site (IPR019794);TENOR=Os07t0104233-00
Chr07	irgsp1_rep	CDS	240466	240552	.	+	0	Parent=Os07t0104233-00
Chr07	irgsp1_rep	CDS	240652	240945	.	+	0	Parent=Os07t0104233-00
Chr07	irgsp1_rep	mRNA	252925	253553	.	-	.	ID=Os07t0104366-00;Name=Os07t0104366-00;Locus_id=Os07g0104366;Note=Hypothetical protein.;Transcript_evidence=BT084813 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0104366-00
Chr07	irgsp1_rep	five_prime_UTR	253553	253553	.	-	.	Parent=Os07t0104366-00
Chr07	irgsp1_rep	CDS	252926	253552	.	-	0	Parent=Os07t0104366-00
Chr07	irgsp1_rep	three_prime_UTR	252925	252925	.	-	.	Parent=Os07t0104366-00
Chr07	irgsp1_rep	mRNA	259712	262742	.	+	.	ID=Os07t0104500-01;Name=Os07t0104500-01;Locus_id=Os07g0104500;Oryzabase Gene Symbol Synonym(s)=prx95%2C OsPRX95;Oryzabase Gene Name Synonym(s)=class III peroxidase 95;Note=Haem peroxidase%2C plant/fungal/bacterial family protein.;Transcript_evidence=AK108824 (DDBJ%2C Best hit);ORF_evidence=Q5U1F9 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793);NIAS_FLcDNA=002-151-F05;Oryzabase=14618;Expression=AK108824;TENOR=Os07t0104500-01;KEGG=Os07t0104500-01
Chr07	irgsp1_rep	five_prime_UTR	259712	259787	.	+	.	Parent=Os07t0104500-01
Chr07	irgsp1_rep	CDS	259788	260201	.	+	0	Parent=Os07t0104500-01
Chr07	irgsp1_rep	CDS	260297	260462	.	+	0	Parent=Os07t0104500-01
Chr07	irgsp1_rep	CDS	261938	262443	.	+	2	Parent=Os07t0104500-01
Chr07	irgsp1_rep	three_prime_UTR	262444	262742	.	+	.	Parent=Os07t0104500-01
Chr07	irgsp1_rep	mRNA	264528	270024	.	-	.	ID=Os07t0104750-00;Name=Os07t0104750-00;Locus_id=Os07g0104750;Note=Similar to H0502G05.13 protein.;Transcript_evidence=BT084813 (DDBJ);ORF_evidence=Q01JF3 (UniProt);InterPro=Domain of unknown function DUF591 (IPR007649);TENOR=Os07t0104750-00
Chr07	irgsp1_rep	CDS	269543	270024	.	-	0	Parent=Os07t0104750-00
Chr07	irgsp1_rep	CDS	264841	264868	.	-	1	Parent=Os07t0104750-00
Chr07	irgsp1_rep	three_prime_UTR	264528	264840	.	-	.	Parent=Os07t0104750-00
Chr07	irgsp1_rep	mRNA	291076	291795	.	+	.	ID=Os07t0105000-00;Name=Os07t0105000-00;Locus_id=Os07g0105000;CGSNL Gene Symbol=UCL20;CGSNL Gene Name=UCLACYANIN-LIKE PROTEIN 20;Oryzabase Gene Symbol Synonym(s)=OsUCL20;Oryzabase Gene Name Synonym(s)=uclacyanin-like protein 20;Note=Cupredoxin domain containing protein.;Transcript_evidence=AK358826 (DDBJ);ORF_evidence=NP_001147368.1 (RefSeq);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Blue (type 1) copper domain (IPR000923),Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);Oryzabase=9769;TENOR=Os07t0105000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	291076	291265	.	+	0	Parent=Os07t0105000-00
Chr07	irgsp1_rep	CDS	291378	291793	.	+	2	Parent=Os07t0105000-00
Chr07	irgsp1_rep	three_prime_UTR	291794	291795	.	+	.	Parent=Os07t0105000-00
Chr07	irgsp1_rep	mRNA	292708	294492	.	-	.	ID=Os07t0105100-00;Name=Os07t0105100-00;Locus_id=Os07g0105100;Note=Similar to DNA-directed RNA polymerases I%2C II%2C and III 7.3 kDa polypeptide.;Transcript_evidence=FP092198 (DDBJ);ORF_evidence=B6SPH6 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899);InterPro=RNA polymerase Rbp10 (IPR006591);TENOR=Os07t0105100-00
Chr07	irgsp1_rep	CDS	294420	294492	.	-	0	Parent=Os07t0105100-00
Chr07	irgsp1_rep	CDS	293867	293959	.	-	2	Parent=Os07t0105100-00
Chr07	irgsp1_rep	CDS	292876	292898	.	-	2	Parent=Os07t0105100-00
Chr07	irgsp1_rep	three_prime_UTR	292708	292875	.	-	.	Parent=Os07t0105100-00
Chr07	irgsp1_rep	mRNA	299704	301425	.	+	.	ID=Os07t0105200-01;Name=Os07t0105200-01;Locus_id=Os07g0105200;Note=Conserved hypothetical protein.;Transcript_evidence=AK107603 (DDBJ%2C Best hit);ORF_evidence=Q8L4Z3 (UniProt);NIAS_FLcDNA=002-131-B08;Oryzabase=17590;TENOR=Os07t0105200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	299704	299745	.	+	.	Parent=Os07t0105200-01
Chr07	irgsp1_rep	CDS	299746	300573	.	+	0	Parent=Os07t0105200-01
Chr07	irgsp1_rep	CDS	300668	300823	.	+	0	Parent=Os07t0105200-01
Chr07	irgsp1_rep	CDS	300973	301239	.	+	0	Parent=Os07t0105200-01
Chr07	irgsp1_rep	three_prime_UTR	301240	301425	.	+	.	Parent=Os07t0105200-01
Chr07	irgsp1_rep	mRNA	302625	303628	.	-	.	ID=Os07t0105300-01;Name=Os07t0105300-01;Locus_id=Os07g0105300;Note=Conserved hypothetical protein.;Transcript_evidence=AK109521 (DDBJ%2C Best hit);ORF_evidence=B8B6J4 (UniProt);NIAS_FLcDNA=002-114-G12;Expression=AK109521;TENOR=Os07t0105300-01;KEGG=Os07t0105300-01
Chr07	irgsp1_rep	five_prime_UTR	303367	303628	.	-	.	Parent=Os07t0105300-01
Chr07	irgsp1_rep	CDS	302881	303366	.	-	0	Parent=Os07t0105300-01
Chr07	irgsp1_rep	three_prime_UTR	302625	302880	.	-	.	Parent=Os07t0105300-01
Chr07	irgsp1_rep	mRNA	302259	303435	.	-	.	ID=Os07t0105300-02;Name=Os07t0105300-02;Locus_id=Os07g0105300;Note=Conserved hypothetical protein.;Transcript_evidence=AK107419 (DDBJ%2C Best hit);ORF_evidence=B8B6J4 (UniProt);NIAS_FLcDNA=002-127-F05;Expression=AK107419;TENOR=Os07t0105300-02;KEGG=Os07t0105300-02
Chr07	irgsp1_rep	five_prime_UTR	303367	303435	.	-	.	Parent=Os07t0105300-02
Chr07	irgsp1_rep	CDS	302881	303366	.	-	0	Parent=Os07t0105300-02
Chr07	irgsp1_rep	three_prime_UTR	302831	302880	.	-	.	Parent=Os07t0105300-02
Chr07	irgsp1_rep	three_prime_UTR	302259	302646	.	-	.	Parent=Os07t0105300-02
Chr07	irgsp1_rep	mRNA	306054	306968	.	+	.	ID=Os07t0105600-01;Name=Os07t0105600-01;Locus_id=Os07g0105600;Note=Photosystem II oxygen evolving complex protein PsbQ family protein.;Transcript_evidence=AK068377 (DDBJ%2C Best hit);ORF_evidence=B4FT19 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: oxygen evolving complex (GO:0009654),Cellular Component: extrinsic to membrane (GO:0019898),Molecular Function: calcium ion binding (GO:0005509);InterPro=Photosystem II PsbQ%2C oxygen evolving complex (IPR008797),PsbQ-like domain (IPR023222);NIAS_FLcDNA=J013148M09;Expression=AK068377;TENOR=Os07t0105600-01;KEGG=Os07t0105600-01
Chr07	irgsp1_rep	five_prime_UTR	306054	306082	.	+	.	Parent=Os07t0105600-01
Chr07	irgsp1_rep	CDS	306083	306350	.	+	0	Parent=Os07t0105600-01
Chr07	irgsp1_rep	CDS	306487	306887	.	+	2	Parent=Os07t0105600-01
Chr07	irgsp1_rep	three_prime_UTR	306888	306968	.	+	.	Parent=Os07t0105600-01
Chr07	irgsp1_rep	mRNA	307038	311943	.	-	.	ID=Os07t0105700-01;Name=Os07t0105700-01;Locus_id=Os07g0105700;RAP-DB Gene Symbol Synonym(s)=OsDLK;RAP-DB Gene Name Synonym(s)=Dual Localisation Kinesin%2C Dual Located Kinesin;CGSNL Gene Symbol=DLK;CGSNL Gene Name=DUAL LOCALISATION KINESIN;Oryzabase Gene Symbol Synonym(s)=OsDLK;Oryzabase Gene Name Synonym(s)=Dual Localisation Kinesin%2C Dual Localization Kinesin;Note=Class-XIV kinesin;Transcript_evidence=AK063949 (truncated),Inferred from literature;ORF_evidence=A3BFT0;GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524),Molecular Function: microtubule binding (GO:0008017);InterPro=Kinesin motor domain superfamily (IPR036961),P-loop containing nucleoside triphosphate hydrolase (IPR027417),Kinesin motor domain (IPR001752),Kinesin motor domain%2C conserved site (IPR019821);NIAS_FLcDNA=001-123-F03 (truncated);Manual Curation=March 23%2C 2018;Literature_PMID=29483672;Oryzabase=22270;TENOR=Os07t0105700-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=cell cortex (GO:0005938), nucleus (GO:0005634)
Chr07	irgsp1_rep	CDS	311716	311943	.	-	0	Parent=Os07t0105700-01
Chr07	irgsp1_rep	CDS	310832	310976	.	-	0	Parent=Os07t0105700-01
Chr07	irgsp1_rep	CDS	310643	310752	.	-	2	Parent=Os07t0105700-01
Chr07	irgsp1_rep	CDS	310443	310562	.	-	0	Parent=Os07t0105700-01
Chr07	irgsp1_rep	CDS	310140	310343	.	-	0	Parent=Os07t0105700-01
Chr07	irgsp1_rep	CDS	309823	310032	.	-	0	Parent=Os07t0105700-01
Chr07	irgsp1_rep	CDS	309675	309749	.	-	0	Parent=Os07t0105700-01
Chr07	irgsp1_rep	CDS	309448	309594	.	-	0	Parent=Os07t0105700-01
Chr07	irgsp1_rep	CDS	309255	309378	.	-	0	Parent=Os07t0105700-01
Chr07	irgsp1_rep	CDS	309043	309152	.	-	2	Parent=Os07t0105700-01
Chr07	irgsp1_rep	CDS	308754	308915	.	-	0	Parent=Os07t0105700-01
Chr07	irgsp1_rep	CDS	308457	308656	.	-	0	Parent=Os07t0105700-01
Chr07	irgsp1_rep	CDS	308030	308111	.	-	1	Parent=Os07t0105700-01
Chr07	irgsp1_rep	CDS	307845	307949	.	-	0	Parent=Os07t0105700-01
Chr07	irgsp1_rep	CDS	307645	307749	.	-	0	Parent=Os07t0105700-01
Chr07	irgsp1_rep	CDS	307384	307551	.	-	0	Parent=Os07t0105700-01
Chr07	irgsp1_rep	three_prime_UTR	307038	307383	.	-	.	Parent=Os07t0105700-01
Chr07	irgsp1_rep	mRNA	307382	312042	.	+	.	ID=Os07t0105750-00;Name=Os07t0105750-00;Locus_id=Os07g0105750;Note=Non-protein coding transcript.;Transcript_evidence=tplb0029c11 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os07t0105750-00
Chr07	irgsp1_rep	exon	307382	307555	.	+	.	Parent=Os07t0105750-00
Chr07	irgsp1_rep	exon	307651	307748	.	+	.	Parent=Os07t0105750-00
Chr07	irgsp1_rep	exon	307844	307940	.	+	.	Parent=Os07t0105750-00
Chr07	irgsp1_rep	exon	308019	308096	.	+	.	Parent=Os07t0105750-00
Chr07	irgsp1_rep	exon	308443	308655	.	+	.	Parent=Os07t0105750-00
Chr07	irgsp1_rep	exon	308753	308919	.	+	.	Parent=Os07t0105750-00
Chr07	irgsp1_rep	exon	309050	309133	.	+	.	Parent=Os07t0105750-00
Chr07	irgsp1_rep	exon	309240	309363	.	+	.	Parent=Os07t0105750-00
Chr07	irgsp1_rep	exon	309433	309577	.	+	.	Parent=Os07t0105750-00
Chr07	irgsp1_rep	exon	309660	309744	.	+	.	Parent=Os07t0105750-00
Chr07	irgsp1_rep	exon	309818	310049	.	+	.	Parent=Os07t0105750-00
Chr07	irgsp1_rep	exon	310155	310323	.	+	.	Parent=Os07t0105750-00
Chr07	irgsp1_rep	exon	310420	310579	.	+	.	Parent=Os07t0105750-00
Chr07	irgsp1_rep	exon	310654	310975	.	+	.	Parent=Os07t0105750-00
Chr07	irgsp1_rep	exon	311715	312042	.	+	.	Parent=Os07t0105750-00
Chr07	irgsp1_rep	mRNA	326737	329181	.	+	.	ID=Os07t0105800-00;Name=Os07t0105800-00;Locus_id=Os07g0105800;Note=Protein of unknown function DUF594 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001058700.1 (RefSeq);InterPro=Protein of unknown function DUF594 (IPR007658);TENOR=Os07t0105800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	326737	327714	.	+	0	Parent=Os07t0105800-00
Chr07	irgsp1_rep	CDS	327823	329181	.	+	0	Parent=Os07t0105800-00
Chr07	irgsp1_rep	mRNA	333276	334779	.	-	.	ID=Os07t0105900-01;Name=Os07t0105900-01;Locus_id=Os07g0105900;Note=NB-ARC domain containing protein.;Transcript_evidence=AK059175 (DDBJ%2C Best hit);ORF_evidence=A2YHC8 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);NIAS_FLcDNA=001-023-F05;Expression=AK059175;TENOR=Os07t0105900-01;KEGG=Os07t0105900-01
Chr07	irgsp1_rep	five_prime_UTR	334773	334779	.	-	.	Parent=Os07t0105900-01
Chr07	irgsp1_rep	CDS	333393	334772	.	-	0	Parent=Os07t0105900-01
Chr07	irgsp1_rep	three_prime_UTR	333276	333392	.	-	.	Parent=Os07t0105900-01
Chr07	irgsp1_rep	mRNA	335232	343705	.	-	.	ID=Os07t0106000-01;Name=Os07t0106000-01;Locus_id=Os07g0106000;Note=Metallophosphoesterase domain containing protein.;Transcript_evidence=AK073089 (DDBJ%2C Best hit);ORF_evidence=NP_194031.5 (RefSeq);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Metallophosphoesterase domain (IPR004843);NIAS_FLcDNA=J033024P06;Expression=AK073089;TENOR=Os07t0106000-01;KEGG=Os07t0106000-01
Chr07	irgsp1_rep	five_prime_UTR	343492	343705	.	-	.	Parent=Os07t0106000-01
Chr07	irgsp1_rep	five_prime_UTR	342623	342730	.	-	.	Parent=Os07t0106000-01
Chr07	irgsp1_rep	CDS	342321	342622	.	-	0	Parent=Os07t0106000-01
Chr07	irgsp1_rep	CDS	341950	342175	.	-	1	Parent=Os07t0106000-01
Chr07	irgsp1_rep	CDS	341604	341852	.	-	0	Parent=Os07t0106000-01
Chr07	irgsp1_rep	CDS	341397	341512	.	-	0	Parent=Os07t0106000-01
Chr07	irgsp1_rep	CDS	341158	341253	.	-	1	Parent=Os07t0106000-01
Chr07	irgsp1_rep	CDS	340734	340821	.	-	1	Parent=Os07t0106000-01
Chr07	irgsp1_rep	CDS	340246	340475	.	-	0	Parent=Os07t0106000-01
Chr07	irgsp1_rep	CDS	339334	339518	.	-	1	Parent=Os07t0106000-01
Chr07	irgsp1_rep	CDS	338973	339172	.	-	2	Parent=Os07t0106000-01
Chr07	irgsp1_rep	CDS	338245	338577	.	-	0	Parent=Os07t0106000-01
Chr07	irgsp1_rep	CDS	338030	338131	.	-	0	Parent=Os07t0106000-01
Chr07	irgsp1_rep	CDS	337239	337536	.	-	0	Parent=Os07t0106000-01
Chr07	irgsp1_rep	CDS	336220	336368	.	-	2	Parent=Os07t0106000-01
Chr07	irgsp1_rep	CDS	335852	336136	.	-	0	Parent=Os07t0106000-01
Chr07	irgsp1_rep	CDS	335497	335688	.	-	0	Parent=Os07t0106000-01
Chr07	irgsp1_rep	three_prime_UTR	335232	335496	.	-	.	Parent=Os07t0106000-01
Chr07	irgsp1_rep	mRNA	335232	339017	.	-	.	ID=Os07t0106000-02;Name=Os07t0106000-02;Locus_id=Os07g0106000;Note=Similar to predicted protein.;Transcript_evidence=AK064319 (DDBJ%2C Best hit);ORF_evidence=NP_194031.5 (RefSeq);NIAS_FLcDNA=002-107-D05;Expression=AK064319;TENOR=Os07t0106000-02;KEGG=Os07t0106000-02
Chr07	irgsp1_rep	CDS	338973	339017	.	-	0	Parent=Os07t0106000-02
Chr07	irgsp1_rep	CDS	338245	338577	.	-	0	Parent=Os07t0106000-02
Chr07	irgsp1_rep	CDS	338030	338131	.	-	0	Parent=Os07t0106000-02
Chr07	irgsp1_rep	CDS	337239	337536	.	-	0	Parent=Os07t0106000-02
Chr07	irgsp1_rep	CDS	336220	336368	.	-	2	Parent=Os07t0106000-02
Chr07	irgsp1_rep	CDS	335852	336136	.	-	0	Parent=Os07t0106000-02
Chr07	irgsp1_rep	CDS	335497	335688	.	-	0	Parent=Os07t0106000-02
Chr07	irgsp1_rep	three_prime_UTR	335232	335496	.	-	.	Parent=Os07t0106000-02
Chr07	irgsp1_rep	mRNA	343935	349227	.	+	.	ID=Os07t0106100-01;Name=Os07t0106100-01;Locus_id=Os07g0106100;Note=Leucine-rich repeat%2C SDS22 containing protein.;Transcript_evidence=AK067091 (DDBJ%2C Best hit);ORF_evidence=A6N1S6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=J013096G23;Expression=AK067091;TENOR=Os07t0106100-01;KEGG=Os07t0106100-01
Chr07	irgsp1_rep	five_prime_UTR	343935	344140	.	+	.	Parent=Os07t0106100-01
Chr07	irgsp1_rep	five_prime_UTR	345658	346003	.	+	.	Parent=Os07t0106100-01
Chr07	irgsp1_rep	CDS	346004	346060	.	+	0	Parent=Os07t0106100-01
Chr07	irgsp1_rep	CDS	346198	347716	.	+	0	Parent=Os07t0106100-01
Chr07	irgsp1_rep	CDS	347831	347977	.	+	2	Parent=Os07t0106100-01
Chr07	irgsp1_rep	CDS	348378	348940	.	+	2	Parent=Os07t0106100-01
Chr07	irgsp1_rep	three_prime_UTR	348941	349227	.	+	.	Parent=Os07t0106100-01
Chr07	irgsp1_rep	mRNA	349231	353686	.	-	.	ID=Os07t0106200-02;Name=Os07t0106200-02;Locus_id=Os07g0106200;CGSNL Gene Symbol=MST3;CGSNL Gene Name=MONOSACCHARIDE TRANSPORTER 3;Oryzabase Gene Symbol Synonym(s)=OsMST3;Oryzabase Gene Name Synonym(s)=monosaccharide transporter 3;Note=Similar to Hexose transporter.;Transcript_evidence=AK103047 (DDBJ%2C Best hit),AK061974 (DDBJ%2C Best hit);ORF_evidence=Q9FRT5 (UniProt);NIAS_FLcDNA=J033117G08,001-042-H12;Oryzabase=14508;Expression=AK103047;TENOR=Os07t0106200-02;KEGG=Os07t0106200-02
Chr07	irgsp1_rep	five_prime_UTR	353551	353686	.	-	.	Parent=Os07t0106200-02
Chr07	irgsp1_rep	CDS	353418	353550	.	-	0	Parent=Os07t0106200-02
Chr07	irgsp1_rep	CDS	352979	353301	.	-	2	Parent=Os07t0106200-02
Chr07	irgsp1_rep	CDS	349439	350539	.	-	0	Parent=Os07t0106200-02
Chr07	irgsp1_rep	three_prime_UTR	349231	349438	.	-	.	Parent=Os07t0106200-02
Chr07	irgsp1_rep	mRNA	349201	350594	.	-	.	ID=Os07t0106200-03;Name=Os07t0106200-03;Locus_id=Os07g0106200;CGSNL Gene Symbol=MST3;CGSNL Gene Name=MONOSACCHARIDE TRANSPORTER 3;Oryzabase Gene Symbol Synonym(s)=OsMST3;Oryzabase Gene Name Synonym(s)=monosaccharide transporter 3;Note=Similar to Monosaccharide transporter 3.;Transcript_evidence=AK099079 (DDBJ%2C Best hit);ORF_evidence=Q9FRT5 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J023001I07;Oryzabase=14508;Expression=AK099079;TENOR=Os07t0106200-03;KEGG=Os07t0106200-03
Chr07	irgsp1_rep	five_prime_UTR	350564	350594	.	-	.	Parent=Os07t0106200-03
Chr07	irgsp1_rep	CDS	349439	350563	.	-	0	Parent=Os07t0106200-03
Chr07	irgsp1_rep	three_prime_UTR	349201	349438	.	-	.	Parent=Os07t0106200-03
Chr07	irgsp1_rep	mRNA	373811	375671	.	+	.	ID=Os07t0106700-01;Name=Os07t0106700-01;Locus_id=Os07g0106700;Note=Similar to disease resistance response protein 206.;Transcript_evidence=AK060004 (DDBJ%2C Best hit),AK100221 (DDBJ%2C Best hit);ORF_evidence=NP_001152062.1 (RefSeq);InterPro=Plant disease resistance response protein (IPR004265);NIAS_FLcDNA=006-302-A08,J023047E19;Expression=AK060004;TENOR=Os07t0106700-01;KEGG=Os07t0106700-01
Chr07	irgsp1_rep	five_prime_UTR	373811	373880	.	+	.	Parent=Os07t0106700-01
Chr07	irgsp1_rep	CDS	373881	374468	.	+	0	Parent=Os07t0106700-01
Chr07	irgsp1_rep	three_prime_UTR	374469	374508	.	+	.	Parent=Os07t0106700-01
Chr07	irgsp1_rep	three_prime_UTR	375380	375671	.	+	.	Parent=Os07t0106700-01
Chr07	irgsp1_rep	mRNA	374373	383052	.	+	.	ID=Os07t0106700-02;Name=Os07t0106700-02;Locus_id=Os07g0106700;Note=Similar to Aminotransferase-like protein.;Transcript_evidence=AK068158 (DDBJ%2C Best hit);ORF_evidence=C8TEY3 (UniProt);NIAS_FLcDNA=J013135N15;Expression=AK068158;TENOR=Os07t0106700-02;KEGG=Os07t0106700-02
Chr07	irgsp1_rep	five_prime_UTR	374373	374508	.	+	.	Parent=Os07t0106700-02
Chr07	irgsp1_rep	five_prime_UTR	380409	380504	.	+	.	Parent=Os07t0106700-02
Chr07	irgsp1_rep	five_prime_UTR	381832	381886	.	+	.	Parent=Os07t0106700-02
Chr07	irgsp1_rep	CDS	381887	382012	.	+	0	Parent=Os07t0106700-02
Chr07	irgsp1_rep	CDS	382091	382264	.	+	0	Parent=Os07t0106700-02
Chr07	irgsp1_rep	three_prime_UTR	382265	383052	.	+	.	Parent=Os07t0106700-02
Chr07	irgsp1_rep	mRNA	383519	384235	.	+	.	ID=Os07t0106900-01;Name=Os07t0106900-01;Locus_id=Os07g0106900;Note=Plant disease resistance response protein family protein.;Transcript_evidence=AK108101 (DDBJ%2C Best hit);ORF_evidence=NP_001151705.1 (RefSeq);InterPro=Plant disease resistance response protein (IPR004265);NIAS_FLcDNA=002-139-B01;Expression=AK108101;TENOR=Os07t0106900-01;KEGG=Os07t0106900-01
Chr07	irgsp1_rep	five_prime_UTR	383519	383525	.	+	.	Parent=Os07t0106900-01
Chr07	irgsp1_rep	CDS	383526	384140	.	+	0	Parent=Os07t0106900-01
Chr07	irgsp1_rep	three_prime_UTR	384141	384235	.	+	.	Parent=Os07t0106900-01
Chr07	irgsp1_rep	mRNA	384232	385009	.	-	.	ID=Os07t0107000-01;Name=Os07t0107000-01;Locus_id=Os07g0107000;Note=Hypothetical protein.;Transcript_evidence=AK065027 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013001G12;Expression=AK065027;TENOR=Os07t0107000-01;KEGG=Os07t0107000-01
Chr07	irgsp1_rep	five_prime_UTR	384965	385009	.	-	.	Parent=Os07t0107000-01
Chr07	irgsp1_rep	CDS	384305	384964	.	-	0	Parent=Os07t0107000-01
Chr07	irgsp1_rep	three_prime_UTR	384232	384304	.	-	.	Parent=Os07t0107000-01
Chr07	irgsp1_rep	mRNA	384351	385171	.	+	.	ID=Os07t0107100-01;Name=Os07t0107100-01;Locus_id=Os07g0107100;Note=Plant disease resistance response protein family protein.;Transcript_evidence=AK062751 (DDBJ%2C Best hit);ORF_evidence=NP_001151705.1 (RefSeq);InterPro=Plant disease resistance response protein (IPR004265);NIAS_FLcDNA=001-106-G03;Expression=AK062751;TENOR=Os07t0107100-01;KEGG=Os07t0107100-01
Chr07	irgsp1_rep	five_prime_UTR	384351	384370	.	+	.	Parent=Os07t0107100-01
Chr07	irgsp1_rep	CDS	384371	385000	.	+	0	Parent=Os07t0107100-01
Chr07	irgsp1_rep	three_prime_UTR	385001	385171	.	+	.	Parent=Os07t0107100-01
Chr07	irgsp1_rep	mRNA	404540	405497	.	-	.	ID=Os07t0107300-01;Name=Os07t0107300-01;Locus_id=Os07g0107300;Note=Plant disease resistance response protein family protein.;Transcript_evidence=AK106062 (DDBJ%2C Best hit),AK119790 (DDBJ%2C Best hit);ORF_evidence=NP_001149580.1 (RefSeq);InterPro=Plant disease resistance response protein (IPR004265);NIAS_FLcDNA=001-206-G06,002-175-A02;Expression=AK106062;TENOR=Os07t0107300-01;KEGG=Os07t0107300-01
Chr07	irgsp1_rep	five_prime_UTR	405468	405497	.	-	.	Parent=Os07t0107300-01
Chr07	irgsp1_rep	CDS	404778	405467	.	-	0	Parent=Os07t0107300-01
Chr07	irgsp1_rep	three_prime_UTR	404540	404777	.	-	.	Parent=Os07t0107300-01
Chr07	irgsp1_rep	mRNA	404708	405708	.	+	.	ID=Os07t0107366-01;Name=Os07t0107366-01;Locus_id=Os07g0107366;Note=Hypothetical gene.;Transcript_evidence=AK109288 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-188-C06;Expression=AK109288;TENOR=Os07t0107366-01;KEGG=Os07t0107366-01
Chr07	irgsp1_rep	CDS	404708	404953	.	+	0	Parent=Os07t0107366-01
Chr07	irgsp1_rep	three_prime_UTR	404954	405708	.	+	.	Parent=Os07t0107366-01
Chr07	irgsp1_rep	mRNA	412918	413595	.	+	.	ID=Os07t0107583-00;Name=Os07t0107583-00;Locus_id=Os07g0107583;Note=Conserved hypothetical protein.;Transcript_evidence=AJ303111 (DDBJ);ORF_evidence=Q9FEX9 (UniProt);TENOR=Os07t0107583-00
Chr07	irgsp1_rep	CDS	412918	413595	.	+	0	Parent=Os07t0107583-00
Chr07	irgsp1_rep	mRNA	424972	428360	.	+	.	ID=Os07t0107800-01;Name=Os07t0107800-01;Locus_id=Os07g0107800;RAP-DB Gene Symbol Synonym(s)=OsPSKR3;RAP-DB Gene Name Synonym(s)=phytosulfokine receptor 3;CGSNL Gene Symbol=PSKR3;CGSNL Gene Name=PHYTOSULFOKINE RECEPTOR 3;Oryzabase Gene Symbol Synonym(s)=OsPSKR3;Oryzabase Gene Name Synonym(s)=phytosulfokine receptor 3;Note=Phytosulfokine (PSK) receptor-like protein;Transcript_evidence=AK121984;ORF_evidence=Q0D948;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=Leucine-rich repeat domain superfamily (IPR032675),Protein kinase-like domain superfamily (IPR011009),Leucine-rich repeat-containing N-terminal%2C plant-type (IPR013210),Protein kinase domain (IPR000719),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat (IPR001611),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J033108O10;Manual Curation=February 19%2C 2020;Literature_PMID=31388828;Oryzabase=23468;Expression=AK121984;TENOR=Os07t0107800-01;KEGG=Os07t0107800-01 (EC:2.7.1.37)
Chr07	irgsp1_rep	five_prime_UTR	424972	425021	.	+	.	Parent=Os07t0107800-01
Chr07	irgsp1_rep	CDS	425022	428129	.	+	0	Parent=Os07t0107800-01
Chr07	irgsp1_rep	three_prime_UTR	428130	428360	.	+	.	Parent=Os07t0107800-01
Chr07	irgsp1_rep	mRNA	426287	428523	.	+	.	ID=Os07t0107800-02;Name=Os07t0107800-02;Locus_id=Os07g0107800;CGSNL Gene Symbol=PSKR3;CGSNL Gene Name=PHYTOSULFOKINE RECEPTOR 3;Oryzabase Gene Symbol Synonym(s)=OsPSKR3;Oryzabase Gene Name Synonym(s)=phytosulfokine receptor 3;Note=Hypothetical conserved gene.;Transcript_evidence=AK064359 (DDBJ%2C Best hit);ORF_evidence=Q8H3W8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=002-108-B08;Oryzabase=23468;Expression=AK064359;TENOR=Os07t0107800-02;KEGG=Os07t0107800-02
Chr07	irgsp1_rep	five_prime_UTR	426287	426287	.	+	.	Parent=Os07t0107800-02
Chr07	irgsp1_rep	CDS	426288	428129	.	+	0	Parent=Os07t0107800-02
Chr07	irgsp1_rep	three_prime_UTR	428130	428523	.	+	.	Parent=Os07t0107800-02
Chr07	irgsp1_rep	mRNA	428798	431565	.	+	.	ID=Os07t0107900-01;Name=Os07t0107900-01;Locus_id=Os07g0107900;Note=Conserved hypothetical protein.;Transcript_evidence=AK073651 (DDBJ%2C Best hit);ORF_evidence=A2YHE0 (UniProt);NIAS_FLcDNA=J033048E09;Expression=AK073651;TENOR=Os07t0107900-01;KEGG=Os07t0107900-01
Chr07	irgsp1_rep	five_prime_UTR	428798	429296	.	+	.	Parent=Os07t0107900-01
Chr07	irgsp1_rep	CDS	429297	429332	.	+	0	Parent=Os07t0107900-01
Chr07	irgsp1_rep	CDS	429574	431127	.	+	0	Parent=Os07t0107900-01
Chr07	irgsp1_rep	CDS	431209	431274	.	+	0	Parent=Os07t0107900-01
Chr07	irgsp1_rep	three_prime_UTR	431275	431565	.	+	.	Parent=Os07t0107900-01
Chr07	irgsp1_rep	mRNA	429005	431607	.	+	.	ID=Os07t0107900-02;Name=Os07t0107900-02;Locus_id=Os07g0107900;Note=Conserved hypothetical protein.;Transcript_evidence=AK073520 (DDBJ%2C Best hit);ORF_evidence=A2YHE0 (UniProt);NIAS_FLcDNA=J033042E18;Expression=AK073520;TENOR=Os07t0107900-02;KEGG=Os07t0107900-02
Chr07	irgsp1_rep	five_prime_UTR	429005	429296	.	+	.	Parent=Os07t0107900-02
Chr07	irgsp1_rep	CDS	429297	429332	.	+	0	Parent=Os07t0107900-02
Chr07	irgsp1_rep	CDS	429574	431127	.	+	0	Parent=Os07t0107900-02
Chr07	irgsp1_rep	CDS	431209	431274	.	+	0	Parent=Os07t0107900-02
Chr07	irgsp1_rep	three_prime_UTR	431275	431607	.	+	.	Parent=Os07t0107900-02
Chr07	irgsp1_rep	mRNA	431999	437549	.	+	.	ID=Os07t0108000-01;Name=Os07t0108000-01;Locus_id=Os07g0108000;Note=Hypothetical conserved gene.;Transcript_evidence=AK241298 (DDBJ%2C Best hit);ORF_evidence=B9FV52 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J065139H23;TENOR=Os07t0108000-01;KEGG=Os07t0108000-01
Chr07	irgsp1_rep	five_prime_UTR	431999	432083	.	+	.	Parent=Os07t0108000-01
Chr07	irgsp1_rep	CDS	432084	432105	.	+	0	Parent=Os07t0108000-01
Chr07	irgsp1_rep	CDS	432176	432297	.	+	2	Parent=Os07t0108000-01
Chr07	irgsp1_rep	CDS	432380	432526	.	+	0	Parent=Os07t0108000-01
Chr07	irgsp1_rep	CDS	432622	432752	.	+	0	Parent=Os07t0108000-01
Chr07	irgsp1_rep	CDS	433557	433789	.	+	1	Parent=Os07t0108000-01
Chr07	irgsp1_rep	CDS	433934	434128	.	+	2	Parent=Os07t0108000-01
Chr07	irgsp1_rep	CDS	434481	434581	.	+	2	Parent=Os07t0108000-01
Chr07	irgsp1_rep	CDS	435030	435185	.	+	0	Parent=Os07t0108000-01
Chr07	irgsp1_rep	CDS	435679	435731	.	+	0	Parent=Os07t0108000-01
Chr07	irgsp1_rep	CDS	435818	435875	.	+	1	Parent=Os07t0108000-01
Chr07	irgsp1_rep	CDS	436162	436282	.	+	0	Parent=Os07t0108000-01
Chr07	irgsp1_rep	CDS	437010	437215	.	+	2	Parent=Os07t0108000-01
Chr07	irgsp1_rep	three_prime_UTR	437216	437549	.	+	.	Parent=Os07t0108000-01
Chr07	irgsp1_rep	mRNA	438289	439843	.	+	.	ID=Os07t0108100-01;Name=Os07t0108100-01;Locus_id=Os07g0108100;Note=Similar to OSIGBa0147O06.5 protein.;Transcript_evidence=AK240987 (DDBJ%2C Best hit);ORF_evidence=Q01LU0 (UniProt);InterPro=Proteinase inhibitor I29%2C cathepsin propeptide (IPR013201);NIAS_FLcDNA=J065050O05;TENOR=Os07t0108100-01;KEGG=Os07t0108100-01
Chr07	irgsp1_rep	five_prime_UTR	438289	438367	.	+	.	Parent=Os07t0108100-01
Chr07	irgsp1_rep	five_prime_UTR	438496	439066	.	+	.	Parent=Os07t0108100-01
Chr07	irgsp1_rep	CDS	439067	439660	.	+	0	Parent=Os07t0108100-01
Chr07	irgsp1_rep	three_prime_UTR	439661	439843	.	+	.	Parent=Os07t0108100-01
Chr07	irgsp1_rep	mRNA	440518	444836	.	-	.	ID=Os07t0108200-00;Name=Os07t0108200-00;Locus_id=Os07g0108200;Note=Similar to transparent testa 12 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001147516.1 (RefSeq);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);TENOR=Os07t0108200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	444552	444836	.	-	0	Parent=Os07t0108200-00
Chr07	irgsp1_rep	CDS	441664	442208	.	-	0	Parent=Os07t0108200-00
Chr07	irgsp1_rep	CDS	441480	441566	.	-	1	Parent=Os07t0108200-00
Chr07	irgsp1_rep	CDS	441320	441376	.	-	1	Parent=Os07t0108200-00
Chr07	irgsp1_rep	CDS	441003	441241	.	-	1	Parent=Os07t0108200-00
Chr07	irgsp1_rep	CDS	440767	440885	.	-	2	Parent=Os07t0108200-00
Chr07	irgsp1_rep	CDS	440518	440646	.	-	0	Parent=Os07t0108200-00
Chr07	irgsp1_rep	mRNA	446195	451249	.	-	.	ID=Os07t0108300-01;Name=Os07t0108300-01;Locus_id=Os07g0108300;Oryzabase Gene Symbol Synonym(s)=ALT-2;Oryzabase Gene Name Synonym(s)=Alanine transaminase 2;Note=Similar to Alanine aminotransferase.;Transcript_evidence=AK067732 (DDBJ%2C Best hit);ORF_evidence=Q84UX4 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Biological Process: 1-aminocyclopropane-1-carboxylate biosynthetic process (GO:0042218),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: 1-aminocyclopropane-1-carboxylate synthase activity (GO:0016847),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=1-aminocyclopropane-1-carboxylate synthase (IPR001176),Aminotransferase%2C class I/classII (IPR004839),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J013118J02;Oryzabase=11422;Expression=AK067732;TENOR=Os07t0108300-01;KEGG=Os07t0108300-01 (EC:2.6.1.2)
Chr07	irgsp1_rep	five_prime_UTR	451163	451249	.	-	.	Parent=Os07t0108300-01
Chr07	irgsp1_rep	CDS	450959	451162	.	-	0	Parent=Os07t0108300-01
Chr07	irgsp1_rep	CDS	450757	450874	.	-	0	Parent=Os07t0108300-01
Chr07	irgsp1_rep	CDS	450492	450573	.	-	2	Parent=Os07t0108300-01
Chr07	irgsp1_rep	CDS	450297	450384	.	-	1	Parent=Os07t0108300-01
Chr07	irgsp1_rep	CDS	450025	450183	.	-	0	Parent=Os07t0108300-01
Chr07	irgsp1_rep	CDS	449125	449298	.	-	0	Parent=Os07t0108300-01
Chr07	irgsp1_rep	CDS	448707	448838	.	-	0	Parent=Os07t0108300-01
Chr07	irgsp1_rep	CDS	448052	448117	.	-	0	Parent=Os07t0108300-01
Chr07	irgsp1_rep	CDS	447516	447580	.	-	0	Parent=Os07t0108300-01
Chr07	irgsp1_rep	CDS	447274	447365	.	-	1	Parent=Os07t0108300-01
Chr07	irgsp1_rep	CDS	447026	447182	.	-	2	Parent=Os07t0108300-01
Chr07	irgsp1_rep	CDS	446619	446739	.	-	1	Parent=Os07t0108300-01
Chr07	irgsp1_rep	three_prime_UTR	446195	446618	.	-	.	Parent=Os07t0108300-01
Chr07	irgsp1_rep	mRNA	446353	451019	.	-	.	ID=Os07t0108300-02;Name=Os07t0108300-02;Locus_id=Os07g0108300;Oryzabase Gene Symbol Synonym(s)=ALT-2;Oryzabase Gene Name Synonym(s)=Alanine transaminase 2;Note=Similar to Alanine aminotransferase.;Transcript_evidence=AK060835 (DDBJ%2C Best hit);ORF_evidence=Q84UX4 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Biological Process: 1-aminocyclopropane-1-carboxylate biosynthetic process (GO:0042218),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: 1-aminocyclopropane-1-carboxylate synthase activity (GO:0016847),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=1-aminocyclopropane-1-carboxylate synthase (IPR001176),Aminotransferase%2C class I/classII (IPR004839),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=001-034-C09;Oryzabase=11422;Expression=AK060835;TENOR=Os07t0108300-02;KEGG=Os07t0108300-02 (EC:2.6.1.2)
Chr07	irgsp1_rep	five_prime_UTR	451019	451019	.	-	.	Parent=Os07t0108300-02
Chr07	irgsp1_rep	CDS	450959	451018	.	-	0	Parent=Os07t0108300-02
Chr07	irgsp1_rep	CDS	450757	450874	.	-	0	Parent=Os07t0108300-02
Chr07	irgsp1_rep	CDS	450492	450573	.	-	2	Parent=Os07t0108300-02
Chr07	irgsp1_rep	CDS	450297	450384	.	-	1	Parent=Os07t0108300-02
Chr07	irgsp1_rep	CDS	450025	450183	.	-	0	Parent=Os07t0108300-02
Chr07	irgsp1_rep	CDS	449125	449298	.	-	0	Parent=Os07t0108300-02
Chr07	irgsp1_rep	CDS	448707	448838	.	-	0	Parent=Os07t0108300-02
Chr07	irgsp1_rep	CDS	448052	448117	.	-	0	Parent=Os07t0108300-02
Chr07	irgsp1_rep	CDS	447516	447580	.	-	0	Parent=Os07t0108300-02
Chr07	irgsp1_rep	CDS	447274	447365	.	-	1	Parent=Os07t0108300-02
Chr07	irgsp1_rep	CDS	447026	447182	.	-	2	Parent=Os07t0108300-02
Chr07	irgsp1_rep	CDS	446619	446739	.	-	1	Parent=Os07t0108300-02
Chr07	irgsp1_rep	three_prime_UTR	446353	446618	.	-	.	Parent=Os07t0108300-02
Chr07	irgsp1_rep	mRNA	450801	451136	.	+	.	ID=Os07t0108350-00;Name=Os07t0108350-00;Locus_id=Os07g0108350;Note=Hypothetical conserved gene.;Transcript_evidence=BT041313 (DDBJ);ORF_evidence=B4FW25 (UniProt);TENOR=Os07t0108350-00
Chr07	irgsp1_rep	CDS	450801	450871	.	+	0	Parent=Os07t0108350-00
Chr07	irgsp1_rep	CDS	450956	451121	.	+	1	Parent=Os07t0108350-00
Chr07	irgsp1_rep	three_prime_UTR	451122	451136	.	+	.	Parent=Os07t0108350-00
Chr07	irgsp1_rep	mRNA	451796	453710	.	-	.	ID=Os07t0108400-01;Name=Os07t0108400-01;Locus_id=Os07g0108400;Note=Similar to Pollen-specific C2 domain containing protein.;Transcript_evidence=AK059356 (DDBJ%2C Best hit);ORF_evidence=B2Z3Q5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=001-026-D06;Manual Curation=October 27%2C 2020;TENOR=Os07t0108400-01
Chr07	irgsp1_rep	five_prime_UTR	452825	453710	.	-	.	Parent=Os07t0108400-01
Chr07	irgsp1_rep	CDS	452714	452824	.	-	0	Parent=Os07t0108400-01
Chr07	irgsp1_rep	CDS	452501	452596	.	-	0	Parent=Os07t0108400-01
Chr07	irgsp1_rep	CDS	452093	452377	.	-	0	Parent=Os07t0108400-01
Chr07	irgsp1_rep	three_prime_UTR	451796	452092	.	-	.	Parent=Os07t0108400-01
Chr07	irgsp1_rep	mRNA	451750	453009	.	-	.	ID=Os07t0108400-02;Name=Os07t0108400-02;Locus_id=Os07g0108400;RAP-DB Gene Symbol Synonym(s)=OsSMCP1;Note=Small C2 domain protein%2C Tolerance to abiotic and biotic stresses;Transcript_evidence=AK099299;ORF_evidence=Q7XIV3;InterPro=C2 domain (IPR000008);NIAS_FLcDNA=J023134A16;Manual Curation=October 27%2C 2020;Literature_PMID=19653105;TENOR=Os07t0108400-02;Subcellular location=plastid (GO:0009536)
Chr07	irgsp1_rep	five_prime_UTR	452825	453009	.	-	.	Parent=Os07t0108400-02
Chr07	irgsp1_rep	CDS	452714	452824	.	-	0	Parent=Os07t0108400-02
Chr07	irgsp1_rep	CDS	452501	452596	.	-	0	Parent=Os07t0108400-02
Chr07	irgsp1_rep	CDS	452093	452377	.	-	0	Parent=Os07t0108400-02
Chr07	irgsp1_rep	three_prime_UTR	451750	452092	.	-	.	Parent=Os07t0108400-02
Chr07	irgsp1_rep	mRNA	457738	460218	.	-	.	ID=Os07t0108500-01;Name=Os07t0108500-01;Locus_id=Os07g0108500;Note=Similar to Pollen-specific C2 domain containing protein.;Transcript_evidence=AK071629 (DDBJ%2C Best hit);ORF_evidence=B2Z3Q0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),C2 membrane targeting protein (IPR018029),C2 region (IPR020477);NIAS_FLcDNA=J023106O03;TENOR=Os07t0108500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	460218	460218	.	-	.	Parent=Os07t0108500-01
Chr07	irgsp1_rep	CDS	460041	460217	.	-	0	Parent=Os07t0108500-01
Chr07	irgsp1_rep	CDS	459100	459195	.	-	0	Parent=Os07t0108500-01
Chr07	irgsp1_rep	CDS	458689	458962	.	-	0	Parent=Os07t0108500-01
Chr07	irgsp1_rep	CDS	458053	458057	.	-	2	Parent=Os07t0108500-01
Chr07	irgsp1_rep	three_prime_UTR	458019	458052	.	-	.	Parent=Os07t0108500-01
Chr07	irgsp1_rep	three_prime_UTR	457738	457901	.	-	.	Parent=Os07t0108500-01
Chr07	irgsp1_rep	mRNA	467286	468753	.	+	.	ID=Os07t0108800-01;Name=Os07t0108800-01;Locus_id=Os07g0108800;RAP-DB Gene Symbol Synonym(s)=TPKB%2C TPKb%2C OsTPKb;RAP-DB Gene Name Synonym(s)=TWO-PORE K+ CHANNEL B%2C two-pore K+ channel b;CGSNL Gene Symbol=TPKB;CGSNL Gene Name=TWO-PORE K+ CHANNEL B;Oryzabase Gene Symbol Synonym(s)=TPKb%2C OsTPKb;Oryzabase Gene Name Synonym(s)=two-pore K+ channel b;Note=Two-pore K+ channel family protein%2C K+ homeostasis%2C Osmotic and drought tolerance;Transcript_evidence=AK109604;ORF_evidence=Q8LIN5;GO=Biological Process: polysaccharide catabolic process (GO:0000272),Biological Process: potassium ion transmembrane transport (GO:0071805),Molecular Function: potassium channel activity (GO:0005267),Cellular Component: membrane (GO:0016020);InterPro=Two pore domain potassium channel (IPR003280),Potassium channel domain (IPR013099),Cellulosome enzyme%2C dockerin type I (IPR016134),EF-hand domain pair (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247);NIAS_FLcDNA=002-137-F01;Manual Curation=November 6%2C 2015;Literature_PMID=26474307,21224427;Oryzabase=9247;Expression=AK109604;TENOR=Os07t0108800-01;KEGG=Os07t0108800-01
Chr07	irgsp1_rep	five_prime_UTR	467286	467415	.	+	.	Parent=Os07t0108800-01
Chr07	irgsp1_rep	CDS	467416	468465	.	+	0	Parent=Os07t0108800-01
Chr07	irgsp1_rep	three_prime_UTR	468466	468753	.	+	.	Parent=Os07t0108800-01
Chr07	irgsp1_rep	mRNA	471352	477655	.	-	.	ID=Os07t0108900-01;Name=Os07t0108900-01;Locus_id=Os07g0108900;CGSNL Gene Symbol=RAP1A;CGSNL Gene Name=RICE APETALA 1A;Oryzabase Gene Symbol Synonym(s)=OsMADS15%2C FDRMADS3%2C RMADS215%2C MADS15%2C DEP;Oryzabase Gene Name Synonym(s)=MADS-box transcription factor 15%2C Protein APETALA1-like A%2C degenerative palea%2C MADS box gene15;Note=Similar to MADS-box transcription factor 15.;Transcript_evidence=AK072683 (DDBJ%2C Best hit);ORF_evidence=Q6Q9I2 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box (IPR002100);NIAS_FLcDNA=J023140K24;Oryzabase=8430;Expression=AK072683;TENOR=Os07t0108900-01;KEGG=Os07t0108900-01
Chr07	irgsp1_rep	five_prime_UTR	477475	477655	.	-	.	Parent=Os07t0108900-01
Chr07	irgsp1_rep	CDS	477290	477474	.	-	0	Parent=Os07t0108900-01
Chr07	irgsp1_rep	CDS	474765	474873	.	-	1	Parent=Os07t0108900-01
Chr07	irgsp1_rep	three_prime_UTR	473396	474764	.	-	.	Parent=Os07t0108900-01
Chr07	irgsp1_rep	three_prime_UTR	473147	473246	.	-	.	Parent=Os07t0108900-01
Chr07	irgsp1_rep	three_prime_UTR	472730	472771	.	-	.	Parent=Os07t0108900-01
Chr07	irgsp1_rep	three_prime_UTR	472552	472593	.	-	.	Parent=Os07t0108900-01
Chr07	irgsp1_rep	three_prime_UTR	471877	472040	.	-	.	Parent=Os07t0108900-01
Chr07	irgsp1_rep	three_prime_UTR	471352	471721	.	-	.	Parent=Os07t0108900-01
Chr07	irgsp1_rep	mRNA	471234	477598	.	-	.	ID=Os07t0108900-02;Name=Os07t0108900-02;Locus_id=Os07g0108900;RAP-DB Gene Symbol Synonym(s)=DEP%2C FDRMADS3%2C MADS15%2C OsMADS15%2C RAP1A%2C RMADS215;RAP-DB Gene Name Synonym(s)=Degenerative palea%2C MADS BOX GENE 15%2C MADS box gene15%2C MADS-box transcription factor 15%2C Protein APETALA1-like A%2C RICE APETALA 1A;CGSNL Gene Symbol=RAP1A;CGSNL Gene Name=RICE APETALA 1A;Oryzabase Gene Symbol Synonym(s)=OsMADS15%2C FDRMADS3%2C RMADS215%2C MADS15%2C DEP;Oryzabase Gene Name Synonym(s)=MADS-box transcription factor 15%2C Protein APETALA1-like A%2C degenerative palea%2C MADS box gene15;Note=APETALA1 (AP1)/ FRUITFULL (FUL)-like MADS box transcription factor%2C Specification of inflorescence meristem identity%2C sexual reproduction;Transcript_evidence=AB003325;ORF_evidence=Q6Q9I2;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein dimerization activity (GO:0046983),Cellular Component: nucleus (GO:0005634);InterPro=Transcription factor%2C MADS-box (IPR002100),Transcription factor%2C K-box (IPR002487);Manual Curation=September 5%2C 2014;Literature_PMID=10382970,20107517,22570445;Oryzabase=8430
Chr07	irgsp1_rep	five_prime_UTR	477475	477598	.	-	.	Parent=Os07t0108900-02
Chr07	irgsp1_rep	CDS	477290	477474	.	-	0	Parent=Os07t0108900-02
Chr07	irgsp1_rep	CDS	474795	474873	.	-	1	Parent=Os07t0108900-02
Chr07	irgsp1_rep	CDS	473396	473460	.	-	0	Parent=Os07t0108900-02
Chr07	irgsp1_rep	CDS	473147	473246	.	-	1	Parent=Os07t0108900-02
Chr07	irgsp1_rep	CDS	472730	472771	.	-	0	Parent=Os07t0108900-02
Chr07	irgsp1_rep	CDS	472552	472593	.	-	0	Parent=Os07t0108900-02
Chr07	irgsp1_rep	CDS	471877	472040	.	-	0	Parent=Os07t0108900-02
Chr07	irgsp1_rep	CDS	471595	471721	.	-	1	Parent=Os07t0108900-02
Chr07	irgsp1_rep	three_prime_UTR	471234	471594	.	-	.	Parent=Os07t0108900-02
Chr07	irgsp1_rep	mRNA	496582	498981	.	-	.	ID=Os07t0109100-00;Name=Os07t0109100-00;Locus_id=Os07g0109100;Note=Protein of unknown function DUF594 family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001058721.1 (RefSeq);InterPro=Protein of unknown function DUF594 (IPR007658);TENOR=Os07t0109100-00;KEGG=Os07t0109100-00
Chr07	irgsp1_rep	CDS	496582	498981	.	-	0	Parent=Os07t0109100-00
Chr07	irgsp1_rep	mRNA	509636	511283	.	+	.	ID=Os07t0109300-00;Name=Os07t0109300-00;Locus_id=Os07g0109300;Note=Similar to 36I5.7.;Transcript_evidence=AK330449 (DDBJ);ORF_evidence=Q8LPX2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=NLI interacting factor (IPR004274),HAD-like domain (IPR023214);TENOR=Os07t0109300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	509636	509820	.	+	0	Parent=Os07t0109300-00
Chr07	irgsp1_rep	CDS	509902	509971	.	+	1	Parent=Os07t0109300-00
Chr07	irgsp1_rep	CDS	510186	510371	.	+	0	Parent=Os07t0109300-00
Chr07	irgsp1_rep	CDS	510477	510537	.	+	0	Parent=Os07t0109300-00
Chr07	irgsp1_rep	CDS	510632	510798	.	+	2	Parent=Os07t0109300-00
Chr07	irgsp1_rep	three_prime_UTR	510799	511283	.	+	.	Parent=Os07t0109300-00
Chr07	irgsp1_rep	mRNA	515866	521916	.	+	.	ID=Os07t0109400-01;Name=Os07t0109400-01;Locus_id=Os07g0109400;RAP-DB Gene Symbol Synonym(s)=SLG7-L2;RAP-DB Gene Name Synonym(s)=SLG7-like2%2C Slender grain on Chromosome 7-like 2;Oryzabase Gene Name Synonym(s)=SLG7-like2;Note=SLG7-like protein%2C Regulation of grain shape;Transcript_evidence=AK070584;ORF_evidence=Q7XIU5;InterPro=DUF3741-associated sequence motif (IPR032795),Domain of unknown function DUF4378 (IPR025486);NIAS_FLcDNA=J023062J01;Manual Curation=October 8%2C 2020;Literature_PMID=26434724;Oryzabase=20435;Expression=AK070584;TENOR=Os07t0109400-01;KEGG=Os07t0109400-01
Chr07	irgsp1_rep	five_prime_UTR	515866	516246	.	+	.	Parent=Os07t0109400-01
Chr07	irgsp1_rep	CDS	516247	516397	.	+	0	Parent=Os07t0109400-01
Chr07	irgsp1_rep	CDS	517198	517265	.	+	2	Parent=Os07t0109400-01
Chr07	irgsp1_rep	CDS	517360	519456	.	+	0	Parent=Os07t0109400-01
Chr07	irgsp1_rep	CDS	519750	519900	.	+	0	Parent=Os07t0109400-01
Chr07	irgsp1_rep	CDS	520883	521685	.	+	2	Parent=Os07t0109400-01
Chr07	irgsp1_rep	three_prime_UTR	521686	521916	.	+	.	Parent=Os07t0109400-01
Chr07	irgsp1_rep	mRNA	523766	525765	.	-	.	ID=Os07t0109500-01;Name=Os07t0109500-01;Locus_id=Os07g0109500;CGSNL Gene Symbol=RPL13A;CGSNL Gene Name=RIBOSOMAL PROTEIN L13A;Oryzabase Gene Symbol Synonym(s)=OsRPL13a%2C RPL13a;Oryzabase Gene Name Synonym(s)=ribosomal protein L13a%2C ribosomal protein large subunit 13a;Note=Ribosomal protein L13 family protein.;Transcript_evidence=AK063806 (DDBJ%2C Best hit),AK103048 (DDBJ%2C Best hit);ORF_evidence=B6SJA0 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Cellular Component: large ribosomal subunit (GO:0015934),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L13%2C eukaryotic/archaeal (IPR005755),Ribosomal protein L13 (IPR005822),Ribosomal protein L13%2C conserved site (IPR023563),Ribosomal protein L13 domain (IPR023564);NIAS_FLcDNA=001-121-G03,J033117G12;Oryzabase=22194;TENOR=Os07t0109500-01
Chr07	irgsp1_rep	five_prime_UTR	525678	525765	.	-	.	Parent=Os07t0109500-01
Chr07	irgsp1_rep	CDS	525289	525677	.	-	0	Parent=Os07t0109500-01
Chr07	irgsp1_rep	CDS	525125	525212	.	-	1	Parent=Os07t0109500-01
Chr07	irgsp1_rep	CDS	523920	524063	.	-	0	Parent=Os07t0109500-01
Chr07	irgsp1_rep	three_prime_UTR	523766	523919	.	-	.	Parent=Os07t0109500-01
Chr07	irgsp1_rep	mRNA	528706	534338	.	-	.	ID=Os07t0109600-01;Name=Os07t0109600-01;Locus_id=Os07g0109600;Note=Leo1-like protein family protein.;Transcript_evidence=AK063942 (DDBJ%2C Best hit);ORF_evidence=XP_002318586.1 (RefSeq);InterPro=Leo1-like protein (IPR007149);NIAS_FLcDNA=001-123-E05;Expression=AK063942;TENOR=Os07t0109600-01;KEGG=Os07t0109600-01
Chr07	irgsp1_rep	five_prime_UTR	533940	534338	.	-	.	Parent=Os07t0109600-01
Chr07	irgsp1_rep	CDS	533700	533939	.	-	0	Parent=Os07t0109600-01
Chr07	irgsp1_rep	CDS	532770	533128	.	-	0	Parent=Os07t0109600-01
Chr07	irgsp1_rep	CDS	532192	532306	.	-	1	Parent=Os07t0109600-01
Chr07	irgsp1_rep	CDS	531536	531718	.	-	0	Parent=Os07t0109600-01
Chr07	irgsp1_rep	CDS	530879	531055	.	-	0	Parent=Os07t0109600-01
Chr07	irgsp1_rep	CDS	530376	530507	.	-	0	Parent=Os07t0109600-01
Chr07	irgsp1_rep	CDS	530086	530265	.	-	0	Parent=Os07t0109600-01
Chr07	irgsp1_rep	CDS	528706	528747	.	-	0	Parent=Os07t0109600-01
Chr07	irgsp1_rep	mRNA	536836	537792	.	-	.	ID=Os07t0109700-01;Name=Os07t0109700-01;Locus_id=Os07g0109700;Note=Conserved hypothetical protein.;Transcript_evidence=AK121031 (DDBJ%2C Best hit),AK121072 (DDBJ%2C Best hit);ORF_evidence=A2YHG1 (UniProt);NIAS_FLcDNA=J023050H23,J023061N13;Expression=AK121031;TENOR=Os07t0109700-01;KEGG=Os07t0109700-01
Chr07	irgsp1_rep	five_prime_UTR	537716	537792	.	-	.	Parent=Os07t0109700-01
Chr07	irgsp1_rep	CDS	537647	537715	.	-	0	Parent=Os07t0109700-01
Chr07	irgsp1_rep	CDS	537402	537547	.	-	0	Parent=Os07t0109700-01
Chr07	irgsp1_rep	CDS	537110	537272	.	-	1	Parent=Os07t0109700-01
Chr07	irgsp1_rep	three_prime_UTR	536836	537109	.	-	.	Parent=Os07t0109700-01
Chr07	irgsp1_rep	mRNA	538041	539687	.	+	.	ID=Os07t0109800-00;Name=Os07t0109800-00;Locus_id=Os07g0109800;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001058727.1 (RefSeq);TENOR=Os07t0109800-00
Chr07	irgsp1_rep	CDS	538041	538139	.	+	0	Parent=Os07t0109800-00
Chr07	irgsp1_rep	CDS	539307	539428	.	+	0	Parent=Os07t0109800-00
Chr07	irgsp1_rep	CDS	539525	539687	.	+	1	Parent=Os07t0109800-00
Chr07	irgsp1_rep	mRNA	548481	554208	.	+	.	ID=Os07t0110000-01;Name=Os07t0110000-01;Locus_id=Os07g0110000;Note=Conserved hypothetical protein.;Transcript_evidence=AK066728 (DDBJ%2C Best hit);ORF_evidence=B8B6V0 (UniProt);NIAS_FLcDNA=J013075E04;Expression=AK066728;TENOR=Os07t0110000-01;KEGG=Os07t0110000-01
Chr07	irgsp1_rep	five_prime_UTR	548481	548856	.	+	.	Parent=Os07t0110000-01
Chr07	irgsp1_rep	five_prime_UTR	548973	551673	.	+	.	Parent=Os07t0110000-01
Chr07	irgsp1_rep	CDS	551674	551700	.	+	0	Parent=Os07t0110000-01
Chr07	irgsp1_rep	CDS	553553	553632	.	+	0	Parent=Os07t0110000-01
Chr07	irgsp1_rep	CDS	553747	553927	.	+	1	Parent=Os07t0110000-01
Chr07	irgsp1_rep	three_prime_UTR	553928	554208	.	+	.	Parent=Os07t0110000-01
Chr07	irgsp1_rep	mRNA	551587	554121	.	+	.	ID=Os07t0110000-02;Name=Os07t0110000-02;Locus_id=Os07g0110000;Note=Hypothetical conserved gene.;Transcript_evidence=AK100382 (DDBJ%2C Best hit);ORF_evidence=B8B6V0 (UniProt);NIAS_FLcDNA=J023085F21;Expression=AK100382;TENOR=Os07t0110000-02;KEGG=Os07t0110000-02
Chr07	irgsp1_rep	five_prime_UTR	551587	553732	.	+	.	Parent=Os07t0110000-02
Chr07	irgsp1_rep	CDS	553733	553927	.	+	0	Parent=Os07t0110000-02
Chr07	irgsp1_rep	three_prime_UTR	553928	554121	.	+	.	Parent=Os07t0110000-02
Chr07	irgsp1_rep	mRNA	556107	558371	.	-	.	ID=Os07t0110100-01;Name=Os07t0110100-01;Locus_id=Os07g0110100;Note=Conserved hypothetical protein.;Transcript_evidence=AK071499 (DDBJ%2C Best hit);ORF_evidence=B8B6V1 (UniProt);NIAS_FLcDNA=J023092A02;Expression=AK071499;TENOR=Os07t0110100-01;KEGG=Os07t0110100-01
Chr07	irgsp1_rep	five_prime_UTR	558350	558371	.	-	.	Parent=Os07t0110100-01
Chr07	irgsp1_rep	CDS	558215	558349	.	-	0	Parent=Os07t0110100-01
Chr07	irgsp1_rep	CDS	556526	556605	.	-	0	Parent=Os07t0110100-01
Chr07	irgsp1_rep	CDS	556274	556430	.	-	1	Parent=Os07t0110100-01
Chr07	irgsp1_rep	three_prime_UTR	556107	556273	.	-	.	Parent=Os07t0110100-01
Chr07	irgsp1_rep	mRNA	559367	560890	.	-	.	ID=Os07t0110200-01;Name=Os07t0110200-01;Locus_id=Os07g0110200;Note=Similar to GTP-binding protein-related.;Transcript_evidence=AK064533 (DDBJ%2C Best hit);ORF_evidence=NP_175505.1 (RefSeq);InterPro=NOG%2C C-terminal (IPR012973);NIAS_FLcDNA=002-111-H06;TENOR=Os07t0110200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	559829	560890	.	-	0	Parent=Os07t0110200-01
Chr07	irgsp1_rep	three_prime_UTR	559792	559828	.	-	.	Parent=Os07t0110200-01
Chr07	irgsp1_rep	three_prime_UTR	559367	559692	.	-	.	Parent=Os07t0110200-01
Chr07	irgsp1_rep	mRNA	563346	566038	.	+	.	ID=Os07t0110300-01;Name=Os07t0110300-01;Locus_id=Os07g0110300;CGSNL Gene Symbol=ISC20;CGSNL Gene Name=IRON-SULFUR CLUSTER PROTEIN 20;Oryzabase Gene Symbol Synonym(s)=OsISC20;Oryzabase Gene Name Synonym(s)=Iron-sulfur cluster protein 20;Note=Similar to Adrenodoxin.;Transcript_evidence=AK073241 (DDBJ%2C Best hit);ORF_evidence=B6U5I8 (UniProt);GO=Molecular Function: electron carrier activity (GO:0009055),Molecular Function: iron-sulfur cluster binding (GO:0051536),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=Ferredoxin (IPR001041),Adrenodoxin (IPR001055),Beta-grasp fold%2C ferredoxin-type (IPR012675),Adrenodoxin%2C iron-sulphur binding site (IPR018298);NIAS_FLcDNA=J033003P09;Oryzabase=13432;Expression=AK073241;TENOR=Os07t0110300-01;KEGG=Os07t0110300-01
Chr07	irgsp1_rep	five_prime_UTR	563346	563430	.	+	.	Parent=Os07t0110300-01
Chr07	irgsp1_rep	five_prime_UTR	563540	563582	.	+	.	Parent=Os07t0110300-01
Chr07	irgsp1_rep	CDS	563583	563637	.	+	0	Parent=Os07t0110300-01
Chr07	irgsp1_rep	CDS	563887	563954	.	+	2	Parent=Os07t0110300-01
Chr07	irgsp1_rep	CDS	564354	564421	.	+	0	Parent=Os07t0110300-01
Chr07	irgsp1_rep	CDS	564661	564767	.	+	1	Parent=Os07t0110300-01
Chr07	irgsp1_rep	CDS	564978	565027	.	+	2	Parent=Os07t0110300-01
Chr07	irgsp1_rep	CDS	565120	565202	.	+	0	Parent=Os07t0110300-01
Chr07	irgsp1_rep	CDS	565705	565819	.	+	1	Parent=Os07t0110300-01
Chr07	irgsp1_rep	three_prime_UTR	565820	566038	.	+	.	Parent=Os07t0110300-01
Chr07	irgsp1_rep	mRNA	575571	582192	.	+	.	ID=Os07t0110400-01;Name=Os07t0110400-01;Locus_id=Os07g0110400;Note=Similar to EMB2773 (EMBRYO DEFECTIVE 2773)%3B binding / protein binding / zinc ion binding.;Transcript_evidence=AK067989 (DDBJ%2C Best hit);ORF_evidence=NP_197058.2 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013125L12;TENOR=Os07t0110400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	575571	575571	.	+	.	Parent=Os07t0110400-01
Chr07	irgsp1_rep	CDS	575572	575622	.	+	0	Parent=Os07t0110400-01
Chr07	irgsp1_rep	CDS	575712	575870	.	+	0	Parent=Os07t0110400-01
Chr07	irgsp1_rep	CDS	575956	576120	.	+	0	Parent=Os07t0110400-01
Chr07	irgsp1_rep	CDS	576732	577031	.	+	0	Parent=Os07t0110400-01
Chr07	irgsp1_rep	CDS	577107	577259	.	+	0	Parent=Os07t0110400-01
Chr07	irgsp1_rep	CDS	578019	578188	.	+	0	Parent=Os07t0110400-01
Chr07	irgsp1_rep	CDS	578738	578852	.	+	1	Parent=Os07t0110400-01
Chr07	irgsp1_rep	CDS	579462	579623	.	+	0	Parent=Os07t0110400-01
Chr07	irgsp1_rep	CDS	579789	579893	.	+	0	Parent=Os07t0110400-01
Chr07	irgsp1_rep	CDS	579969	580199	.	+	0	Parent=Os07t0110400-01
Chr07	irgsp1_rep	CDS	580277	580410	.	+	0	Parent=Os07t0110400-01
Chr07	irgsp1_rep	CDS	580484	580738	.	+	1	Parent=Os07t0110400-01
Chr07	irgsp1_rep	CDS	580822	581110	.	+	1	Parent=Os07t0110400-01
Chr07	irgsp1_rep	CDS	581214	581306	.	+	0	Parent=Os07t0110400-01
Chr07	irgsp1_rep	CDS	581395	581520	.	+	0	Parent=Os07t0110400-01
Chr07	irgsp1_rep	CDS	581646	581897	.	+	0	Parent=Os07t0110400-01
Chr07	irgsp1_rep	three_prime_UTR	581898	582192	.	+	.	Parent=Os07t0110400-01
Chr07	irgsp1_rep	mRNA	580112	582192	.	+	.	ID=Os07t0110400-02;Name=Os07t0110400-02;Locus_id=Os07g0110400;Note=Hypothetical conserved gene.;Transcript_evidence=AK058681 (DDBJ%2C Best hit);ORF_evidence=B8B6V3 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-type fold (IPR016024);NIAS_FLcDNA=001-019-A04;Expression=AK058681;TENOR=Os07t0110400-02;KEGG=Os07t0110400-02
Chr07	irgsp1_rep	five_prime_UTR	580112	580112	.	+	.	Parent=Os07t0110400-02
Chr07	irgsp1_rep	CDS	580113	580199	.	+	0	Parent=Os07t0110400-02
Chr07	irgsp1_rep	CDS	580277	580410	.	+	0	Parent=Os07t0110400-02
Chr07	irgsp1_rep	CDS	580484	580738	.	+	1	Parent=Os07t0110400-02
Chr07	irgsp1_rep	CDS	580822	581110	.	+	1	Parent=Os07t0110400-02
Chr07	irgsp1_rep	CDS	581214	581306	.	+	0	Parent=Os07t0110400-02
Chr07	irgsp1_rep	CDS	581395	581520	.	+	0	Parent=Os07t0110400-02
Chr07	irgsp1_rep	CDS	581646	581897	.	+	0	Parent=Os07t0110400-02
Chr07	irgsp1_rep	three_prime_UTR	581898	582192	.	+	.	Parent=Os07t0110400-02
Chr07	irgsp1_rep	mRNA	583534	586772	.	+	.	ID=Os07t0110500-01;Name=Os07t0110500-01;Locus_id=Os07g0110500;Note=Conserved hypothetical protein.;Transcript_evidence=AK240635 (DDBJ%2C Best hit);ORF_evidence=A2YHG6 (UniProt);NIAS_FLcDNA=J013039B09;TENOR=Os07t0110500-01;KEGG=Os07t0110500-01
Chr07	irgsp1_rep	five_prime_UTR	583534	583591	.	+	.	Parent=Os07t0110500-01
Chr07	irgsp1_rep	CDS	583592	583747	.	+	0	Parent=Os07t0110500-01
Chr07	irgsp1_rep	CDS	586226	586305	.	+	0	Parent=Os07t0110500-01
Chr07	irgsp1_rep	CDS	586384	586543	.	+	1	Parent=Os07t0110500-01
Chr07	irgsp1_rep	three_prime_UTR	586544	586772	.	+	.	Parent=Os07t0110500-01
Chr07	irgsp1_rep	mRNA	597035	598203	.	+	.	ID=Os07t0110650-00;Name=Os07t0110650-00;Locus_id=Os07g0110650;Note=Hypothetical gene.;Transcript_evidence=CT841759 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os07t0110650-00;KEGG=Os07t0110650-00
Chr07	irgsp1_rep	five_prime_UTR	597035	597035	.	+	.	Parent=Os07t0110650-00
Chr07	irgsp1_rep	CDS	597036	597584	.	+	0	Parent=Os07t0110650-00
Chr07	irgsp1_rep	three_prime_UTR	597585	598203	.	+	.	Parent=Os07t0110650-00
Chr07	irgsp1_rep	mRNA	604586	607425	.	-	.	ID=Os07t0110800-01;Name=Os07t0110800-01;Locus_id=Os07g0110800;Note=Conserved hypothetical protein.;Transcript_evidence=AK062792 (DDBJ%2C Best hit);ORF_evidence=B9FV63 (UniProt);NIAS_FLcDNA=001-107-C03;Expression=AK062792;TENOR=Os07t0110800-01;KEGG=Os07t0110800-01
Chr07	irgsp1_rep	five_prime_UTR	607416	607425	.	-	.	Parent=Os07t0110800-01
Chr07	irgsp1_rep	CDS	607308	607415	.	-	0	Parent=Os07t0110800-01
Chr07	irgsp1_rep	CDS	605100	605212	.	-	0	Parent=Os07t0110800-01
Chr07	irgsp1_rep	CDS	604880	605012	.	-	1	Parent=Os07t0110800-01
Chr07	irgsp1_rep	three_prime_UTR	604586	604879	.	-	.	Parent=Os07t0110800-01
Chr07	irgsp1_rep	mRNA	607685	608602	.	+	.	ID=Os07t0110900-01;Name=Os07t0110900-01;Locus_id=Os07g0110900;Note=Conserved hypothetical protein.;Transcript_evidence=AK058987 (DDBJ%2C Best hit);ORF_evidence=B9FV64 (UniProt);NIAS_FLcDNA=001-020-E10;Expression=AK058987;TENOR=Os07t0110900-01;KEGG=Os07t0110900-01
Chr07	irgsp1_rep	five_prime_UTR	607685	607790	.	+	.	Parent=Os07t0110900-01
Chr07	irgsp1_rep	CDS	607791	607928	.	+	0	Parent=Os07t0110900-01
Chr07	irgsp1_rep	CDS	608061	608203	.	+	0	Parent=Os07t0110900-01
Chr07	irgsp1_rep	CDS	608335	608488	.	+	1	Parent=Os07t0110900-01
Chr07	irgsp1_rep	three_prime_UTR	608489	608602	.	+	.	Parent=Os07t0110900-01
Chr07	irgsp1_rep	mRNA	614918	617568	.	+	.	ID=Os07t0111100-01;Name=Os07t0111100-01;Locus_id=Os07g0111100;Note=Conserved hypothetical protein.;Transcript_evidence=AK243374 (DDBJ%2C Best hit);ORF_evidence=NP_001175018.1 (RefSeq);NIAS_FLcDNA=J100062N12;TENOR=Os07t0111100-01;KEGG=Os07t0111100-01
Chr07	irgsp1_rep	five_prime_UTR	614918	615017	.	+	.	Parent=Os07t0111100-01
Chr07	irgsp1_rep	CDS	615018	615146	.	+	0	Parent=Os07t0111100-01
Chr07	irgsp1_rep	CDS	616976	617055	.	+	0	Parent=Os07t0111100-01
Chr07	irgsp1_rep	CDS	617160	617313	.	+	1	Parent=Os07t0111100-01
Chr07	irgsp1_rep	three_prime_UTR	617314	617568	.	+	.	Parent=Os07t0111100-01
Chr07	irgsp1_rep	mRNA	630682	634245	.	-	.	ID=Os07t0111400-01;Name=Os07t0111400-01;Locus_id=Os07g0111400;RAP-DB Gene Symbol Synonym(s)=OsWRKY29;RAP-DB Gene Name Synonym(s)=WRKY GENE 29;CGSNL Gene Symbol=WRKY29;CGSNL Gene Name=WRKY GENE 29;Oryzabase Gene Symbol Synonym(s)=OsWRKY29;Oryzabase Gene Name Synonym(s)=Rice WRKY gene29;Note=WRKY transcription factor%2C Repression of seed dormancy;Transcript_evidence=AY341858;ORF_evidence=Q8H5U1;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA-binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=WRKY domain superfamily (IPR036576),WRKY domain (IPR003657);Manual Curation=June 16%2C 2020;Literature_PMID=32536934,Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6541;Expression=AY341858;TENOR=Os07t0111400-00;KEGG=Os07t0111400-00;Subcellular location=nucleus (GO:0005634)
Chr07	irgsp1_rep	five_prime_UTR	634193	634245	.	-	.	Parent=Os07t0111400-01
Chr07	irgsp1_rep	CDS	633906	634192	.	-	0	Parent=Os07t0111400-01
Chr07	irgsp1_rep	CDS	632695	632838	.	-	1	Parent=Os07t0111400-01
Chr07	irgsp1_rep	CDS	630819	631260	.	-	1	Parent=Os07t0111400-01
Chr07	irgsp1_rep	three_prime_UTR	630682	630818	.	-	.	Parent=Os07t0111400-01
Chr07	irgsp1_rep	mRNA	658777	663168	.	+	.	ID=Os07t0111600-01;Name=Os07t0111600-01;Locus_id=Os07g0111600;CGSNL Gene Symbol=PAP9A;CGSNL Gene Name=PURPLE ACID PHOSPHATASE 9A;Oryzabase Gene Symbol Synonym(s)=OsPAP9a;Oryzabase Gene Name Synonym(s)=purple acid phosphatase 9a;Note=Similar to Purple acid phosphatase.;Transcript_evidence=AK100372 (DDBJ%2C Best hit);ORF_evidence=NP_001152437.1 (RefSeq);GO=Molecular Function: acid phosphatase activity (GO:0003993),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: metal ion binding (GO:0046872);InterPro=Metallophosphoesterase domain (IPR004843),Purple acid phosphatase-like%2C N-terminal (IPR008963),Purple acid phosphatase%2C N-terminal (IPR015914);NIAS_FLcDNA=J023084G21;Oryzabase=11380;Expression=AK100372;TENOR=Os07t0111600-01;KEGG=Os07t0111600-01
Chr07	irgsp1_rep	five_prime_UTR	658777	658845	.	+	.	Parent=Os07t0111600-01
Chr07	irgsp1_rep	CDS	658846	659538	.	+	0	Parent=Os07t0111600-01
Chr07	irgsp1_rep	CDS	661652	662920	.	+	0	Parent=Os07t0111600-01
Chr07	irgsp1_rep	three_prime_UTR	662921	663168	.	+	.	Parent=Os07t0111600-01
Chr07	irgsp1_rep	mRNA	661879	663143	.	+	.	ID=Os07t0111600-02;Name=Os07t0111600-02;Locus_id=Os07g0111600;CGSNL Gene Symbol=PAP9A;CGSNL Gene Name=PURPLE ACID PHOSPHATASE 9A;Oryzabase Gene Symbol Synonym(s)=OsPAP9a;Oryzabase Gene Name Synonym(s)=purple acid phosphatase 9a;Note=Similar to hydrolase/ protein serine/threonine phosphatase.;Transcript_evidence=AK062093 (DDBJ%2C Best hit);ORF_evidence=NP_001152437.1 (RefSeq);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Metallophosphoesterase domain (IPR004843);NIAS_FLcDNA=001-044-H05;Oryzabase=11380;Expression=AK062093;TENOR=Os07t0111600-02;KEGG=Os07t0111600-02
Chr07	irgsp1_rep	five_prime_UTR	661879	661879	.	+	.	Parent=Os07t0111600-02
Chr07	irgsp1_rep	CDS	661880	662920	.	+	0	Parent=Os07t0111600-02
Chr07	irgsp1_rep	three_prime_UTR	662921	663143	.	+	.	Parent=Os07t0111600-02
Chr07	irgsp1_rep	mRNA	661935	663081	.	+	.	ID=Os07t0111600-03;Name=Os07t0111600-03;Locus_id=Os07g0111600;CGSNL Gene Symbol=PAP9A;CGSNL Gene Name=PURPLE ACID PHOSPHATASE 9A;Oryzabase Gene Symbol Synonym(s)=OsPAP9a;Oryzabase Gene Name Synonym(s)=purple acid phosphatase 9a;Note=Similar to hydrolase/ protein serine/threonine phosphatase.;Transcript_evidence=AK073350 (DDBJ%2C Best hit);ORF_evidence=NP_001152437.1 (RefSeq);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Metallophosphoesterase domain (IPR004843);NIAS_FLcDNA=J033026J16;Oryzabase=11380;Expression=AK073350;TENOR=Os07t0111600-03;KEGG=Os07t0111600-03
Chr07	irgsp1_rep	five_prime_UTR	661935	661936	.	+	.	Parent=Os07t0111600-03
Chr07	irgsp1_rep	CDS	661937	662920	.	+	0	Parent=Os07t0111600-03
Chr07	irgsp1_rep	three_prime_UTR	662921	663081	.	+	.	Parent=Os07t0111600-03
Chr07	irgsp1_rep	mRNA	664618	666204	.	+	.	ID=Os07t0111700-01;Name=Os07t0111700-01;Locus_id=Os07g0111700;Note=Flavin monooxygenase FMO domain containing protein.;Transcript_evidence=AK072540 (DDBJ%2C Best hit);ORF_evidence=B9FV67 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: flavin-containing monooxygenase activity (GO:0004499),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=Flavin monooxygenase FMO (IPR000960),Flavin monooxygenase-like (IPR020946);NIAS_FLcDNA=J023132I08;TENOR=Os07t0111700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	664618	664618	.	+	.	Parent=Os07t0111700-01
Chr07	irgsp1_rep	CDS	664619	666022	.	+	0	Parent=Os07t0111700-01
Chr07	irgsp1_rep	three_prime_UTR	666023	666204	.	+	.	Parent=Os07t0111700-01
Chr07	irgsp1_rep	mRNA	664642	667101	.	+	.	ID=Os07t0111700-02;Name=Os07t0111700-02;Locus_id=Os07g0111700;Note=Similar to cDNA clone:J023132I08%2C full insert sequence.;Transcript_evidence=AK121613 (DDBJ%2C Best hit);ORF_evidence=B7EKX6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: flavin-containing monooxygenase activity (GO:0004499),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=Flavin monooxygenase FMO (IPR000960),Flavin monooxygenase-like (IPR020946);NIAS_FLcDNA=J033043J23;TENOR=Os07t0111700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	664642	664642	.	+	.	Parent=Os07t0111700-02
Chr07	irgsp1_rep	CDS	664643	666022	.	+	0	Parent=Os07t0111700-02
Chr07	irgsp1_rep	three_prime_UTR	666023	666053	.	+	.	Parent=Os07t0111700-02
Chr07	irgsp1_rep	three_prime_UTR	666549	667101	.	+	.	Parent=Os07t0111700-02
Chr07	irgsp1_rep	mRNA	664983	666204	.	+	.	ID=Os07t0111700-03;Name=Os07t0111700-03;Locus_id=Os07g0111700;Note=Similar to cDNA clone:J023132I08%2C full insert sequence.;Transcript_evidence=AK103996 (DDBJ%2C Best hit);ORF_evidence=B7EKX6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: flavin-containing monooxygenase activity (GO:0004499),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=Flavin monooxygenase FMO (IPR000960),Flavin monooxygenase-like (IPR020946);NIAS_FLcDNA=001-018-G03;Expression=AK103996;TENOR=Os07t0111700-03;KEGG=Os07t0111700-03
Chr07	irgsp1_rep	five_prime_UTR	664983	664984	.	+	.	Parent=Os07t0111700-03
Chr07	irgsp1_rep	CDS	664985	666022	.	+	0	Parent=Os07t0111700-03
Chr07	irgsp1_rep	three_prime_UTR	666023	666204	.	+	.	Parent=Os07t0111700-03
Chr07	irgsp1_rep	mRNA	668427	669380	.	+	.	ID=Os07t0111800-00;Name=Os07t0111800-00;Locus_id=Os07g0111800;Note=Conserved hypothetical protein.;Transcript_evidence=CT836050 (DDBJ%2C Best hit);ORF_evidence=Q8H5V9 (UniProt);TENOR=Os07t0111800-00
Chr07	irgsp1_rep	five_prime_UTR	668427	668510	.	+	.	Parent=Os07t0111800-00
Chr07	irgsp1_rep	five_prime_UTR	668550	668625	.	+	.	Parent=Os07t0111800-00
Chr07	irgsp1_rep	CDS	668626	669117	.	+	0	Parent=Os07t0111800-00
Chr07	irgsp1_rep	three_prime_UTR	669118	669380	.	+	.	Parent=Os07t0111800-00
Chr07	irgsp1_rep	mRNA	673173	674603	.	+	.	ID=Os07t0111900-00;Name=Os07t0111900-00;Locus_id=Os07g0111900;Note=Flavin-containing monooxygenase FMO family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B7EKX6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: flavin-containing monooxygenase activity (GO:0004499),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=Flavin monooxygenase FMO (IPR000960),Flavin monooxygenase-like (IPR020946);TENOR=Os07t0111900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	673173	674603	.	+	0	Parent=Os07t0111900-00
Chr07	irgsp1_rep	mRNA	677468	678907	.	+	.	ID=Os07t0112000-00;Name=Os07t0112000-00;Locus_id=Os07g0112000;Note=Dimethylaniline monooxygenase-like protein.;Transcript_evidence=AK355167 (DDBJ);ORF_evidence=B7EKX6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: flavin-containing monooxygenase activity (GO:0004499),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=Flavin monooxygenase FMO (IPR000960),Flavin monooxygenase-like (IPR020946);TENOR=Os07t0112000-00;KEGG=Os07t0112000-00
Chr07	irgsp1_rep	CDS	677468	678907	.	+	0	Parent=Os07t0112000-00
Chr07	irgsp1_rep	mRNA	685467	687222	.	+	.	ID=Os07t0112100-00;Name=Os07t0112100-00;Locus_id=Os07g0112100;Note=Similar to J023132I08%2C full insert sequence.;Transcript_evidence=BT042994 (DDBJ);ORF_evidence=B7EKX6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: intrinsic to endoplasmic reticulum membrane (GO:0031227),Molecular Function: flavin-containing monooxygenase activity (GO:0004499),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=Flavin monooxygenase FMO (IPR000960),Dimethylaniline monooxygenase%2C N-oxide-forming (IPR012143),Flavin monooxygenase-like (IPR020946);TENOR=Os07t0112100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	685467	685470	.	+	.	Parent=Os07t0112100-00
Chr07	irgsp1_rep	CDS	685471	686154	.	+	0	Parent=Os07t0112100-00
Chr07	irgsp1_rep	CDS	686271	686834	.	+	0	Parent=Os07t0112100-00
Chr07	irgsp1_rep	CDS	686938	687222	.	+	0	Parent=Os07t0112100-00
Chr07	irgsp1_rep	mRNA	689982	690619	.	-	.	ID=Os07t0112300-00;Name=Os07t0112300-00;Locus_id=Os07g0112300;Note=3'-5' exonuclease domain containing protein.;Transcript_evidence=FP099855 (DDBJ);ORF_evidence=B9FV68 (UniProt);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: 3'-5' exonuclease activity (GO:0008408);InterPro=3'-5' exonuclease (IPR002562),Ribonuclease H-like (IPR012337);TENOR=Os07t0112300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	690382	690619	.	-	.	Parent=Os07t0112300-00
Chr07	irgsp1_rep	CDS	690031	690381	.	-	0	Parent=Os07t0112300-00
Chr07	irgsp1_rep	three_prime_UTR	689982	690030	.	-	.	Parent=Os07t0112300-00
Chr07	irgsp1_rep	mRNA	690060	690567	.	+	.	ID=Os07t0112351-00;Name=Os07t0112351-00;Locus_id=Os07g0112351;Note=Hypothetical protein.;Transcript_evidence=BT019050 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0112351-00
Chr07	irgsp1_rep	five_prime_UTR	690060	690060	.	+	.	Parent=Os07t0112351-00
Chr07	irgsp1_rep	CDS	690061	690567	.	+	0	Parent=Os07t0112351-00
Chr07	irgsp1_rep	mRNA	693416	694906	.	-	.	ID=Os07t0112400-00;Name=Os07t0112400-00;Locus_id=Os07g0112400;Note=3&apos%3B-5&apos%3B exonuclease domain containing protein.;Transcript_evidence=FP099855 (DDBJ);ORF_evidence=NP_001058743.2 (RefSeq);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: 3'-5' exonuclease activity (GO:0008408);InterPro=3&apos%3B-5&apos%3B exonuclease (IPR002562),Ribonuclease H-like (IPR012337);TENOR=Os07t0112400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	693416	694906	.	-	0	Parent=Os07t0112400-00
Chr07	irgsp1_rep	mRNA	697413	698927	.	-	.	ID=Os07t0112600-01;Name=Os07t0112600-01;Locus_id=Os07g0112600;Note=Conserved hypothetical protein.;Transcript_evidence=AK109561 (DDBJ%2C Best hit);ORF_evidence=Q5Z5C8 (UniProt);NIAS_FLcDNA=002-127-E02;TENOR=Os07t0112600-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	697684	698927	.	-	.	Parent=Os07t0112600-01
Chr07	irgsp1_rep	CDS	697519	697683	.	-	0	Parent=Os07t0112600-01
Chr07	irgsp1_rep	three_prime_UTR	697413	697518	.	-	.	Parent=Os07t0112600-01
Chr07	irgsp1_rep	mRNA	699881	700826	.	-	.	ID=Os07t0112700-01;Name=Os07t0112700-01;Locus_id=Os07g0112700;CGSNL Gene Symbol=ENODL19;CGSNL Gene Name=EARLY NODULIN LIKE PROTEIN 19;Oryzabase Gene Symbol Synonym(s)=OsENODL19;Oryzabase Gene Name Synonym(s)=early nodulin-like protein 19;Note=Cupredoxin domain containing protein.;Transcript_evidence=AK073121 (DDBJ%2C Best hit);ORF_evidence=NP_001141893.1 (RefSeq);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);NIAS_FLcDNA=J033012A01;Oryzabase=9744;Expression=AK073121;TENOR=Os07t0112700-01;KEGG=Os07t0112700-01
Chr07	irgsp1_rep	five_prime_UTR	700718	700826	.	-	.	Parent=Os07t0112700-01
Chr07	irgsp1_rep	CDS	700549	700717	.	-	0	Parent=Os07t0112700-01
Chr07	irgsp1_rep	CDS	700093	700460	.	-	2	Parent=Os07t0112700-01
Chr07	irgsp1_rep	three_prime_UTR	699881	700092	.	-	.	Parent=Os07t0112700-01
Chr07	irgsp1_rep	mRNA	703009	705502	.	+	.	ID=Os07t0112800-01;Name=Os07t0112800-01;Locus_id=Os07g0112800;Note=Similar to Eukaryotic translation initiation factor 5A-4 (eIF-5A-4).;Transcript_evidence=AK058206 (DDBJ%2C Best hit);ORF_evidence=Q9ZSU2 (UniProt);GO=Biological Process: translational frameshifting (GO:0006452),Biological Process: peptidyl-lysine modification to hypusine (GO:0008612),Biological Process: positive regulation of translational elongation (GO:0045901),Biological Process: positive regulation of translational termination (GO:0045905),Molecular Function: RNA binding (GO:0003723),Molecular Function: translation elongation factor activity (GO:0003746),Molecular Function: ribosome binding (GO:0043022);InterPro=Translation elongation factor IF5A (IPR001884),KOW (IPR005824),Translation protein SH3-like (IPR008991),Nucleic acid-binding%2C OB-fold (IPR012340),Translation protein SH3-like%2C subgroup (IPR014722),Nucleic acid-binding%2C OB-fold-like (IPR016027),Translation elongation factor%2C IF5A%2C hypusine site (IPR019769),Translation elongation factor%2C IF5A C-terminal (IPR020189);NIAS_FLcDNA=001-010-A08;Expression=AK058206;TENOR=Os07t0112800-01;KEGG=Os07t0112800-01
Chr07	irgsp1_rep	five_prime_UTR	703009	703061	.	+	.	Parent=Os07t0112800-01
Chr07	irgsp1_rep	five_prime_UTR	703192	703222	.	+	.	Parent=Os07t0112800-01
Chr07	irgsp1_rep	CDS	703223	703348	.	+	0	Parent=Os07t0112800-01
Chr07	irgsp1_rep	CDS	704434	704556	.	+	0	Parent=Os07t0112800-01
Chr07	irgsp1_rep	CDS	704646	704702	.	+	0	Parent=Os07t0112800-01
Chr07	irgsp1_rep	CDS	704797	704871	.	+	0	Parent=Os07t0112800-01
Chr07	irgsp1_rep	CDS	705105	705212	.	+	0	Parent=Os07t0112800-01
Chr07	irgsp1_rep	three_prime_UTR	705213	705502	.	+	.	Parent=Os07t0112800-01
Chr07	irgsp1_rep	mRNA	708843	718771	.	+	.	ID=Os07t0113000-01;Name=Os07t0113000-01;Locus_id=Os07g0113000;Note=Domain of unknown function DUF223 domain containing protein.;Transcript_evidence=AK287861 (DDBJ%2C Best hit);ORF_evidence=NP_001175020.1 (RefSeq);InterPro=Domain of unknown function DUF223 (IPR003871),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=J065199A22;TENOR=Os07t0113000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	708843	708997	.	+	.	Parent=Os07t0113000-01
Chr07	irgsp1_rep	five_prime_UTR	709077	709085	.	+	.	Parent=Os07t0113000-01
Chr07	irgsp1_rep	CDS	709086	709153	.	+	0	Parent=Os07t0113000-01
Chr07	irgsp1_rep	CDS	709255	709316	.	+	1	Parent=Os07t0113000-01
Chr07	irgsp1_rep	CDS	715606	715760	.	+	2	Parent=Os07t0113000-01
Chr07	irgsp1_rep	CDS	715850	716123	.	+	0	Parent=Os07t0113000-01
Chr07	irgsp1_rep	CDS	716208	716314	.	+	2	Parent=Os07t0113000-01
Chr07	irgsp1_rep	three_prime_UTR	716315	716617	.	+	.	Parent=Os07t0113000-01
Chr07	irgsp1_rep	three_prime_UTR	716688	716766	.	+	.	Parent=Os07t0113000-01
Chr07	irgsp1_rep	three_prime_UTR	716856	717079	.	+	.	Parent=Os07t0113000-01
Chr07	irgsp1_rep	three_prime_UTR	717165	717319	.	+	.	Parent=Os07t0113000-01
Chr07	irgsp1_rep	three_prime_UTR	717398	717938	.	+	.	Parent=Os07t0113000-01
Chr07	irgsp1_rep	three_prime_UTR	718025	718104	.	+	.	Parent=Os07t0113000-01
Chr07	irgsp1_rep	three_prime_UTR	718185	718265	.	+	.	Parent=Os07t0113000-01
Chr07	irgsp1_rep	three_prime_UTR	718356	718771	.	+	.	Parent=Os07t0113000-01
Chr07	irgsp1_rep	mRNA	706967	719112	.	-	.	ID=Os07t0113100-00;Name=Os07t0113100-00;Locus_id=Os07g0113100;Note=Similar to X1 (Fragment).;Transcript_evidence=EU962781 (DDBJ);ORF_evidence=Q7FSP8 (UniProt);InterPro=Uncharacterised domain XH (IPR005379);TENOR=Os07t0113100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	718894	719112	.	-	0	Parent=Os07t0113100-00
Chr07	irgsp1_rep	CDS	706967	707245	.	-	0	Parent=Os07t0113100-00
Chr07	irgsp1_rep	mRNA	719584	720210	.	-	.	ID=Os07t0113101-00;Name=Os07t0113101-00;Locus_id=Os07g0113101;Note=Conserved hypothetical protein.;Transcript_evidence=BT034941 (DDBJ);ORF_evidence=Q8GRH9 (UniProt);TENOR=Os07t0113101-00
Chr07	irgsp1_rep	CDS	719800	720210	.	-	0	Parent=Os07t0113101-00
Chr07	irgsp1_rep	three_prime_UTR	719584	719799	.	-	.	Parent=Os07t0113101-00
Chr07	irgsp1_rep	mRNA	722913	726481	.	-	.	ID=Os07t0113200-01;Name=Os07t0113200-01;Locus_id=Os07g0113200;Note=Conserved hypothetical protein.;Transcript_evidence=AK108787 (DDBJ%2C Best hit);ORF_evidence=B8B6R6 (UniProt);NIAS_FLcDNA=002-151-B02;Expression=AK108787;TENOR=Os07t0113200-01;KEGG=Os07t0113200-01
Chr07	irgsp1_rep	five_prime_UTR	726435	726481	.	-	.	Parent=Os07t0113200-01
Chr07	irgsp1_rep	CDS	726333	726434	.	-	0	Parent=Os07t0113200-01
Chr07	irgsp1_rep	CDS	723550	723662	.	-	0	Parent=Os07t0113200-01
Chr07	irgsp1_rep	CDS	723326	723464	.	-	1	Parent=Os07t0113200-01
Chr07	irgsp1_rep	three_prime_UTR	722913	723325	.	-	.	Parent=Os07t0113200-01
Chr07	irgsp1_rep	mRNA	726627	727559	.	+	.	ID=Os07t0113300-00;Name=Os07t0113300-00;Locus_id=Os07g0113300;Note=Hypothetical conserved gene.;Transcript_evidence=CT836096 (DDBJ%2C Best hit);ORF_evidence=Q8GSA2 (UniProt);TENOR=Os07t0113300-00;KEGG=Os07t0113300-00
Chr07	irgsp1_rep	five_prime_UTR	726627	726676	.	+	.	Parent=Os07t0113300-00
Chr07	irgsp1_rep	CDS	726677	726775	.	+	0	Parent=Os07t0113300-00
Chr07	irgsp1_rep	CDS	726923	727044	.	+	0	Parent=Os07t0113300-00
Chr07	irgsp1_rep	CDS	727228	727369	.	+	1	Parent=Os07t0113300-00
Chr07	irgsp1_rep	three_prime_UTR	727370	727559	.	+	.	Parent=Os07t0113300-00
Chr07	irgsp1_rep	mRNA	742920	744853	.	+	.	ID=Os07t0113500-00;Name=Os07t0113500-00;Locus_id=Os07g0113500;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK334716 (DDBJ);ORF_evidence=B6SSC4 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os07t0113500-00;KEGG=Os07t0113500-00
Chr07	irgsp1_rep	five_prime_UTR	742920	742930	.	+	.	Parent=Os07t0113500-00
Chr07	irgsp1_rep	CDS	742931	744835	.	+	0	Parent=Os07t0113500-00
Chr07	irgsp1_rep	three_prime_UTR	744836	744853	.	+	.	Parent=Os07t0113500-00
Chr07	irgsp1_rep	mRNA	749501	753179	.	-	.	ID=Os07t0113600-00;Name=Os07t0113600-00;Locus_id=Os07g0113600;Oryzabase Gene Symbol Synonym(s)=OsFbox329%2C Os_F0529;Oryzabase Gene Name Synonym(s)=F-box protein 329;Note=Hypothetical conserved gene.;Transcript_evidence=AK248285 (DDBJ);ORF_evidence=Q8GRQ3 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);Oryzabase=17105;TENOR=Os07t0113600-00;KEGG=Os07t0113600-00
Chr07	irgsp1_rep	CDS	752082	753179	.	-	0	Parent=Os07t0113600-00
Chr07	irgsp1_rep	CDS	750646	750819	.	-	0	Parent=Os07t0113600-00
Chr07	irgsp1_rep	CDS	749571	749921	.	-	0	Parent=Os07t0113600-00
Chr07	irgsp1_rep	three_prime_UTR	749501	749570	.	-	.	Parent=Os07t0113600-00
Chr07	irgsp1_rep	mRNA	753673	763372	.	-	.	ID=Os07t0113700-01;Name=Os07t0113700-01;Locus_id=Os07g0113700;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK105098 (DDBJ%2C Best hit);ORF_evidence=B8B6R7 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide TPR-1 (IPR001440),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=001-100-C04;Expression=AK105098;TENOR=Os07t0113700-01;KEGG=Os07t0113700-01
Chr07	irgsp1_rep	five_prime_UTR	763281	763372	.	-	.	Parent=Os07t0113700-01
Chr07	irgsp1_rep	CDS	763165	763280	.	-	0	Parent=Os07t0113700-01
Chr07	irgsp1_rep	CDS	762956	763065	.	-	1	Parent=Os07t0113700-01
Chr07	irgsp1_rep	CDS	760916	761511	.	-	2	Parent=Os07t0113700-01
Chr07	irgsp1_rep	CDS	760618	760662	.	-	0	Parent=Os07t0113700-01
Chr07	irgsp1_rep	CDS	760434	760535	.	-	0	Parent=Os07t0113700-01
Chr07	irgsp1_rep	CDS	760276	760358	.	-	0	Parent=Os07t0113700-01
Chr07	irgsp1_rep	CDS	760111	760175	.	-	1	Parent=Os07t0113700-01
Chr07	irgsp1_rep	CDS	759874	759974	.	-	2	Parent=Os07t0113700-01
Chr07	irgsp1_rep	CDS	759414	759521	.	-	0	Parent=Os07t0113700-01
Chr07	irgsp1_rep	CDS	759188	759258	.	-	0	Parent=Os07t0113700-01
Chr07	irgsp1_rep	CDS	759037	759093	.	-	1	Parent=Os07t0113700-01
Chr07	irgsp1_rep	CDS	758257	758365	.	-	1	Parent=Os07t0113700-01
Chr07	irgsp1_rep	CDS	757978	758058	.	-	0	Parent=Os07t0113700-01
Chr07	irgsp1_rep	CDS	757319	757405	.	-	0	Parent=Os07t0113700-01
Chr07	irgsp1_rep	CDS	757036	757242	.	-	0	Parent=Os07t0113700-01
Chr07	irgsp1_rep	CDS	755949	756250	.	-	0	Parent=Os07t0113700-01
Chr07	irgsp1_rep	CDS	755742	755828	.	-	1	Parent=Os07t0113700-01
Chr07	irgsp1_rep	CDS	755535	755634	.	-	1	Parent=Os07t0113700-01
Chr07	irgsp1_rep	CDS	755019	755110	.	-	0	Parent=Os07t0113700-01
Chr07	irgsp1_rep	CDS	754844	754882	.	-	1	Parent=Os07t0113700-01
Chr07	irgsp1_rep	CDS	754674	754764	.	-	1	Parent=Os07t0113700-01
Chr07	irgsp1_rep	CDS	754311	754408	.	-	0	Parent=Os07t0113700-01
Chr07	irgsp1_rep	CDS	753935	754223	.	-	1	Parent=Os07t0113700-01
Chr07	irgsp1_rep	three_prime_UTR	753673	753934	.	-	.	Parent=Os07t0113700-01
Chr07	irgsp1_rep	mRNA	780384	781950	.	-	.	ID=Os07t0114000-01;Name=Os07t0114000-01;Locus_id=Os07g0114000;Oryzabase Gene Symbol Synonym(s)=OsPP2C61%2C PP2C61%2C OsPP93;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C61%2C protein phosphatase 2C 61%2C protein phosphatase 93;Note=Similar to Protein phosphatase 2C-like.;Transcript_evidence=AK102668 (DDBJ%2C Best hit);ORF_evidence=XP_002869186.1 (RefSeq);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J033101O03;Oryzabase=17934;Expression=AK102668;TENOR=Os07t0114000-01;KEGG=Os07t0114000-01
Chr07	irgsp1_rep	five_prime_UTR	781795	781950	.	-	.	Parent=Os07t0114000-01
Chr07	irgsp1_rep	CDS	781542	781794	.	-	0	Parent=Os07t0114000-01
Chr07	irgsp1_rep	CDS	780554	781434	.	-	2	Parent=Os07t0114000-01
Chr07	irgsp1_rep	three_prime_UTR	780384	780553	.	-	.	Parent=Os07t0114000-01
Chr07	irgsp1_rep	mRNA	797466	798941	.	+	.	ID=Os07t0114300-01;Name=Os07t0114300-01;Locus_id=Os07g0114300;Note=Protein of unknown function DUF1909 domain containing protein.;Transcript_evidence=AK062043 (DDBJ%2C Best hit);ORF_evidence=A2YHJ0 (UniProt);NIAS_FLcDNA=001-044-A07;Expression=AK062043;TENOR=Os07t0114300-01;KEGG=Os07t0114300-01
Chr07	irgsp1_rep	five_prime_UTR	797466	797571	.	+	.	Parent=Os07t0114300-01
Chr07	irgsp1_rep	CDS	797572	797644	.	+	0	Parent=Os07t0114300-01
Chr07	irgsp1_rep	CDS	797780	797820	.	+	2	Parent=Os07t0114300-01
Chr07	irgsp1_rep	CDS	798603	798722	.	+	0	Parent=Os07t0114300-01
Chr07	irgsp1_rep	three_prime_UTR	798723	798941	.	+	.	Parent=Os07t0114300-01
Chr07	irgsp1_rep	mRNA	799617	805177	.	-	.	ID=Os07t0114400-01;Name=Os07t0114400-01;Locus_id=Os07g0114400;Oryzabase Gene Symbol Synonym(s)=OsCKA2-2%2C CKA2-2;Oryzabase Gene Name Synonym(s)=casein kinase II-alpha%2C CK2alpha subunit 2;Note=Casein kinase II alpha subunit.;Transcript_evidence=AK070271 (DDBJ%2C Best hit);ORF_evidence=B6F122 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023047E06;Oryzabase=17743;Expression=AK070271;TENOR=Os07t0114400-01;KEGG=Os07t0114400-01 (EC:2.7.11.1)
Chr07	irgsp1_rep	five_prime_UTR	804963	805177	.	-	.	Parent=Os07t0114400-01
Chr07	irgsp1_rep	CDS	804877	804962	.	-	0	Parent=Os07t0114400-01
Chr07	irgsp1_rep	CDS	802499	802628	.	-	1	Parent=Os07t0114400-01
Chr07	irgsp1_rep	CDS	802144	802338	.	-	0	Parent=Os07t0114400-01
Chr07	irgsp1_rep	CDS	801622	801779	.	-	0	Parent=Os07t0114400-01
Chr07	irgsp1_rep	CDS	801143	801233	.	-	1	Parent=Os07t0114400-01
Chr07	irgsp1_rep	CDS	800957	801022	.	-	0	Parent=Os07t0114400-01
Chr07	irgsp1_rep	CDS	800434	800516	.	-	0	Parent=Os07t0114400-01
Chr07	irgsp1_rep	CDS	800282	800345	.	-	1	Parent=Os07t0114400-01
Chr07	irgsp1_rep	CDS	800118	800186	.	-	0	Parent=Os07t0114400-01
Chr07	irgsp1_rep	CDS	799883	799942	.	-	0	Parent=Os07t0114400-01
Chr07	irgsp1_rep	three_prime_UTR	799617	799882	.	-	.	Parent=Os07t0114400-01
Chr07	irgsp1_rep	mRNA	809697	812515	.	+	.	ID=Os07t0114500-01;Name=Os07t0114500-01;Locus_id=Os07g0114500;Note=Conserved hypothetical protein.;Transcript_evidence=AK064629 (DDBJ%2C Best hit);ORF_evidence=A2YHJ2 (UniProt);NIAS_FLcDNA=002-113-F12;Expression=AK064629;TENOR=Os07t0114500-01;KEGG=Os07t0114500-01
Chr07	irgsp1_rep	five_prime_UTR	809697	809757	.	+	.	Parent=Os07t0114500-01
Chr07	irgsp1_rep	CDS	809758	809886	.	+	0	Parent=Os07t0114500-01
Chr07	irgsp1_rep	CDS	811614	811865	.	+	0	Parent=Os07t0114500-01
Chr07	irgsp1_rep	CDS	812058	812155	.	+	0	Parent=Os07t0114500-01
Chr07	irgsp1_rep	CDS	812260	812359	.	+	1	Parent=Os07t0114500-01
Chr07	irgsp1_rep	three_prime_UTR	812360	812515	.	+	.	Parent=Os07t0114500-01
Chr07	irgsp1_rep	mRNA	813276	813966	.	-	.	ID=Os07t0114550-01;Name=Os07t0114550-01;Locus_id=Os07g0114550;Note=Conserved hypothetical protein.;Transcript_evidence=AK242648 (DDBJ%2C Best hit);ORF_evidence=NP_001175021.1 (RefSeq);NIAS_FLcDNA=J090025L18;TENOR=Os07t0114550-01;KEGG=Os07t0114550-01
Chr07	irgsp1_rep	five_prime_UTR	813575	813966	.	-	.	Parent=Os07t0114550-01
Chr07	irgsp1_rep	CDS	813302	813574	.	-	0	Parent=Os07t0114550-01
Chr07	irgsp1_rep	three_prime_UTR	813276	813301	.	-	.	Parent=Os07t0114550-01
Chr07	irgsp1_rep	mRNA	834313	835728	.	-	.	ID=Os07t0115200-01;Name=Os07t0115200-01;Locus_id=Os07g0115200;Oryzabase Gene Symbol Synonym(s)=OsSTA185;Note=Conserved hypothetical protein.;Transcript_evidence=AK111404 (DDBJ%2C Best hit);ORF_evidence=A2YHJ7 (UniProt);NIAS_FLcDNA=002-182-E06;Oryzabase=19466;Expression=AK111404;TENOR=Os07t0115200-01;KEGG=Os07t0115200-01
Chr07	irgsp1_rep	five_prime_UTR	835511	835728	.	-	.	Parent=Os07t0115200-01
Chr07	irgsp1_rep	CDS	834779	835510	.	-	0	Parent=Os07t0115200-01
Chr07	irgsp1_rep	three_prime_UTR	834313	834778	.	-	.	Parent=Os07t0115200-01
Chr07	irgsp1_rep	mRNA	838070	841318	.	+	.	ID=Os07t0115300-01;Name=Os07t0115300-01;Locus_id=Os07g0115300;Oryzabase Gene Symbol Synonym(s)=prx98;Oryzabase Gene Name Synonym(s)=class III peroxidase 98;Note=Similar to Peroxidase2 precursor (EC 1.11.1.7).;Transcript_evidence=AK061511 (DDBJ%2C Best hit);ORF_evidence=C9WF06 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=006-309-G05;Oryzabase=14621;Expression=AK061511;TENOR=Os07t0115300-01;KEGG=Os07t0115300-01 (EC:1.11.1.7)
Chr07	irgsp1_rep	five_prime_UTR	838070	838247	.	+	.	Parent=Os07t0115300-01
Chr07	irgsp1_rep	CDS	838248	838679	.	+	0	Parent=Os07t0115300-01
Chr07	irgsp1_rep	CDS	839071	839236	.	+	0	Parent=Os07t0115300-01
Chr07	irgsp1_rep	CDS	840494	840888	.	+	2	Parent=Os07t0115300-01
Chr07	irgsp1_rep	three_prime_UTR	840889	841318	.	+	.	Parent=Os07t0115300-01
Chr07	irgsp1_rep	mRNA	838279	840844	.	-	.	ID=Os07t0115350-00;Name=Os07t0115350-00;Locus_id=Os07g0115350;Note=Hypothetical protein.;Transcript_evidence=tplb0038a01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0115350-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	840530	840844	.	-	.	Parent=Os07t0115350-00
Chr07	irgsp1_rep	CDS	840487	840529	.	-	0	Parent=Os07t0115350-00
Chr07	irgsp1_rep	CDS	839089	839231	.	-	2	Parent=Os07t0115350-00
Chr07	irgsp1_rep	CDS	838279	838700	.	-	0	Parent=Os07t0115350-00
Chr07	irgsp1_rep	mRNA	848966	849761	.	+	.	ID=Os07t0115500-01;Name=Os07t0115500-01;Locus_id=Os07g0115500;Note=Hypothetical protein.;Transcript_evidence=AK108206 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=002-140-D05;TENOR=Os07t0115500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	848966	849137	.	+	0	Parent=Os07t0115500-01
Chr07	irgsp1_rep	CDS	849253	849449	.	+	2	Parent=Os07t0115500-01
Chr07	irgsp1_rep	three_prime_UTR	849450	849761	.	+	.	Parent=Os07t0115500-01
Chr07	irgsp1_rep	mRNA	852331	855022	.	+	.	ID=Os07t0115600-00;Name=Os07t0115600-00;Locus_id=Os07g0115600;Note=Protein of unknown function DUF566 domain containing protein.;Transcript_evidence=EU971592 (DDBJ);ORF_evidence=Q8H2N8 (UniProt);InterPro=Protein of unknown function DUF566 (IPR007573);TENOR=Os07t0115600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	852331	853368	.	+	0	Parent=Os07t0115600-00
Chr07	irgsp1_rep	CDS	853611	853730	.	+	0	Parent=Os07t0115600-00
Chr07	irgsp1_rep	CDS	854253	854369	.	+	0	Parent=Os07t0115600-00
Chr07	irgsp1_rep	CDS	854466	854555	.	+	0	Parent=Os07t0115600-00
Chr07	irgsp1_rep	CDS	854730	854837	.	+	0	Parent=Os07t0115600-00
Chr07	irgsp1_rep	CDS	854933	855022	.	+	0	Parent=Os07t0115600-00
Chr07	irgsp1_rep	mRNA	854250	854850	.	-	.	ID=Os07t0115650-00;Name=Os07t0115650-00;Locus_id=Os07g0115650;Note=Non-protein coding transcript.;Transcript_evidence=EU949981 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0115650-00
Chr07	irgsp1_rep	exon	854250	854850	.	-	.	Parent=Os07t0115650-00
Chr07	irgsp1_rep	mRNA	857727	859369	.	-	.	ID=Os07t0115700-00;Name=Os07t0115700-00;Locus_id=Os07g0115700;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A3BG01 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);TENOR=Os07t0115700-00;KEGG=Os07t0115700-00
Chr07	irgsp1_rep	CDS	858164	859369	.	-	0	Parent=Os07t0115700-00
Chr07	irgsp1_rep	CDS	857727	858125	.	-	0	Parent=Os07t0115700-00
Chr07	irgsp1_rep	mRNA	859413	859895	.	-	.	ID=Os07t0115720-00;Name=Os07t0115720-00;Locus_id=Os07g0115720;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3BG01 (UniProt);TENOR=Os07t0115720-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	859413	859895	.	-	0	Parent=Os07t0115720-00
Chr07	irgsp1_rep	mRNA	872665	874538	.	+	.	ID=Os07t0115800-00;Name=Os07t0115800-00;Locus_id=Os07g0115800;CGSNL Gene Symbol=MSL27;CGSNL Gene Name=MYB/SANT-LIKE 27;Oryzabase Gene Symbol Synonym(s)=OsMSL27;Oryzabase Gene Name Synonym(s)=Myb/SANT-LIKE 27;Note=Hypothetical conserved gene.;Transcript_evidence=AK106587 (DDBJ%2C Secondary hit);ORF_evidence=Q60DP5 (UniProt);InterPro=Myb/SANT-like domain (IPR024752);Oryzabase=22938;Expression=AK106587;TENOR=Os07t0115800-00;KEGG=Os07t0115800-00
Chr07	irgsp1_rep	five_prime_UTR	872665	872665	.	+	.	Parent=Os07t0115800-00
Chr07	irgsp1_rep	CDS	872666	872796	.	+	0	Parent=Os07t0115800-00
Chr07	irgsp1_rep	CDS	872993	873135	.	+	1	Parent=Os07t0115800-00
Chr07	irgsp1_rep	CDS	873236	873619	.	+	2	Parent=Os07t0115800-00
Chr07	irgsp1_rep	CDS	873714	874297	.	+	2	Parent=Os07t0115800-00
Chr07	irgsp1_rep	three_prime_UTR	874298	874538	.	+	.	Parent=Os07t0115800-00
Chr07	irgsp1_rep	mRNA	874545	875959	.	-	.	ID=Os07t0116050-00;Name=Os07t0116050-00;Locus_id=Os07g0116050;Note=Transposase%2C IS4-like domain containing protein.;Transcript_evidence=BT037367 (DDBJ);ORF_evidence=XP_002449014.1 (RefSeq);GO=Biological Process: transposition%2C DNA-mediated (GO:0006313),Molecular Function: DNA binding (GO:0003677),Molecular Function: transposase activity (GO:0004803);InterPro=Transposase%2C IS4-like (IPR002559);TENOR=Os07t0116050-00
Chr07	irgsp1_rep	CDS	875345	875959	.	-	0	Parent=Os07t0116050-00
Chr07	irgsp1_rep	CDS	874545	875246	.	-	0	Parent=Os07t0116050-00
Chr07	irgsp1_rep	mRNA	895314	897677	.	+	.	ID=Os07t0116300-01;Name=Os07t0116300-01;Locus_id=Os07g0116300;RAP-DB Gene Symbol Synonym(s)=OsSAC1;RAP-DB Gene Name Synonym(s)=sugar accumulation 1;CGSNL Gene Symbol=SAC1;CGSNL Gene Name=SUGAR ACCUMULATION 1;Oryzabase Gene Symbol Synonym(s)=OsSAC1;Oryzabase Gene Name Synonym(s)=sugar accumulation 1;Note=Endoplasmic reticulum protein%2C Regulation of sugar partitioning in carbon-demanding young leaves and developing leaf sheaths;Transcript_evidence=Inferred from literature;ORF_evidence=Q8H2N2;InterPro=Protein of unknown function DUF594 (IPR007658),Domain of unknown function DUF4220 (IPR025315);Manual Curation=June 14%2C 2019;Literature_PMID=29272542;Oryzabase=22816;TENOR=Os07t0116300-00;Subcellular location=endoplasmic reticulum (GO:0005783)
Chr07	irgsp1_rep	CDS	895314	897677	.	+	0	Parent=Os07t0116300-01
Chr07	irgsp1_rep	mRNA	909597	911056	.	-	.	ID=Os07t0116600-00;Name=Os07t0116600-00;Locus_id=Os07g0116600;Note=Similar to HLS1 (HOOKLESS 1)%3B N-acetyltransferase.;Transcript_evidence=AK355381 (DDBJ);ORF_evidence=NP_195474.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: N-acetyltransferase activity (GO:0008080);InterPro=GCN5-related N-acetyltransferase (GNAT) domain (IPR000182),Acyl-CoA N-acyltransferase (IPR016181);TENOR=Os07t0116600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	910886	911056	.	-	.	Parent=Os07t0116600-00
Chr07	irgsp1_rep	CDS	910685	910885	.	-	0	Parent=Os07t0116600-00
Chr07	irgsp1_rep	CDS	909600	910592	.	-	0	Parent=Os07t0116600-00
Chr07	irgsp1_rep	three_prime_UTR	909597	909599	.	-	.	Parent=Os07t0116600-00
Chr07	irgsp1_rep	mRNA	919575	921478	.	-	.	ID=Os07t0116800-00;Name=Os07t0116800-00;Locus_id=Os07g0116800;Note=Hypothetical conserved gene.;Transcript_evidence=CT836123 (DDBJ%2C Best hit);ORF_evidence=Q8H5K6 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os07t0116800-00;KEGG=Os07t0116800-00
Chr07	irgsp1_rep	five_prime_UTR	921437	921478	.	-	.	Parent=Os07t0116800-00
Chr07	irgsp1_rep	CDS	919901	921436	.	-	0	Parent=Os07t0116800-00
Chr07	irgsp1_rep	three_prime_UTR	919575	919900	.	-	.	Parent=Os07t0116800-00
Chr07	irgsp1_rep	mRNA	925097	928476	.	-	.	ID=Os07t0116900-01;Name=Os07t0116900-01;Locus_id=Os07g0116900;Note=Conserved hypothetical protein.;Transcript_evidence=AK065960 (DDBJ%2C Best hit);ORF_evidence=A3BG10 (UniProt);NIAS_FLcDNA=J013045M24;TENOR=Os07t0116900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	928056	928476	.	-	.	Parent=Os07t0116900-01
Chr07	irgsp1_rep	five_prime_UTR	926839	927824	.	-	.	Parent=Os07t0116900-01
Chr07	irgsp1_rep	CDS	926262	926838	.	-	0	Parent=Os07t0116900-01
Chr07	irgsp1_rep	CDS	926100	926152	.	-	2	Parent=Os07t0116900-01
Chr07	irgsp1_rep	three_prime_UTR	925097	926099	.	-	.	Parent=Os07t0116900-01
Chr07	irgsp1_rep	mRNA	928540	931304	.	-	.	ID=Os07t0117000-01;Name=Os07t0117000-01;Locus_id=Os07g0117000;Note=NB-ARC domain containing protein.;Transcript_evidence=AK069420 (DDBJ%2C Best hit);ORF_evidence=A3BG12 (UniProt);NIAS_FLcDNA=J023020C21;Expression=AK069420;TENOR=Os07t0117000-01;KEGG=Os07t0117000-01
Chr07	irgsp1_rep	five_prime_UTR	931290	931304	.	-	.	Parent=Os07t0117000-01
Chr07	irgsp1_rep	CDS	931050	931289	.	-	0	Parent=Os07t0117000-01
Chr07	irgsp1_rep	CDS	928691	930223	.	-	0	Parent=Os07t0117000-01
Chr07	irgsp1_rep	three_prime_UTR	928540	928690	.	-	.	Parent=Os07t0117000-01
Chr07	irgsp1_rep	mRNA	939612	941126	.	-	.	ID=Os07t0117200-00;Name=Os07t0117200-00;Locus_id=Os07g0117200;Note=NB-ARC domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8H5K1 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os07t0117200-00
Chr07	irgsp1_rep	CDS	939612	941126	.	-	0	Parent=Os07t0117200-00
Chr07	irgsp1_rep	mRNA	945207	946785	.	-	.	ID=Os07t0117300-00;Name=Os07t0117300-00;Locus_id=Os07g0117300;Note=NB-ARC domain containing protein.;Transcript_evidence=AK360769 (DDBJ);ORF_evidence=Q8H5K0 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os07t0117300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	946779	946785	.	-	.	Parent=Os07t0117300-00
Chr07	irgsp1_rep	CDS	945207	946778	.	-	0	Parent=Os07t0117300-00
Chr07	irgsp1_rep	mRNA	948072	949493	.	-	.	ID=Os07t0117350-00;Name=Os07t0117350-00;Locus_id=Os07g0117350;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FV87 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os07t0117350-00;KEGG=Os07t0117350-00
Chr07	irgsp1_rep	CDS	948072	949493	.	-	0	Parent=Os07t0117350-00
Chr07	irgsp1_rep	mRNA	950862	953818	.	-	.	ID=Os07t0117400-01;Name=Os07t0117400-01;Locus_id=Os07g0117400;Note=NB-ARC domain containing protein.;Transcript_evidence=AK070693 (DDBJ%2C Best hit);ORF_evidence=B8B6T0 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);NIAS_FLcDNA=J023056A16;Expression=AK070693;TENOR=Os07t0117400-01;KEGG=Os07t0117400-01
Chr07	irgsp1_rep	five_prime_UTR	953566	953818	.	-	.	Parent=Os07t0117400-01
Chr07	irgsp1_rep	five_prime_UTR	952755	952987	.	-	.	Parent=Os07t0117400-01
Chr07	irgsp1_rep	five_prime_UTR	952573	952658	.	-	.	Parent=Os07t0117400-01
Chr07	irgsp1_rep	CDS	951052	952572	.	-	0	Parent=Os07t0117400-01
Chr07	irgsp1_rep	three_prime_UTR	950862	951051	.	-	.	Parent=Os07t0117400-01
Chr07	irgsp1_rep	mRNA	956244	957230	.	-	.	ID=Os07t0117600-00;Name=Os07t0117600-00;Locus_id=Os07g0117600;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8H5J6 (UniProt);TENOR=Os07t0117600-00
Chr07	irgsp1_rep	CDS	956244	957230	.	-	0	Parent=Os07t0117600-00
Chr07	irgsp1_rep	mRNA	960090	962357	.	-	.	ID=Os07t0117800-00;Name=Os07t0117800-00;Locus_id=Os07g0117800;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001058762.2 (RefSeq);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os07t0117800-00;KEGG=Os07t0117800-00
Chr07	irgsp1_rep	CDS	961221	962357	.	-	0	Parent=Os07t0117800-00
Chr07	irgsp1_rep	CDS	960090	960260	.	-	0	Parent=Os07t0117800-00
Chr07	irgsp1_rep	mRNA	964856	966454	.	-	.	ID=Os07t0117900-00;Name=Os07t0117900-00;Locus_id=Os07g0117900;Note=NB-ARC domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8H5J4 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os07t0117900-00
Chr07	irgsp1_rep	CDS	964856	966454	.	-	0	Parent=Os07t0117900-00
Chr07	irgsp1_rep	mRNA	967261	968685	.	-	.	ID=Os07t0118000-00;Name=Os07t0118000-00;Locus_id=Os07g0118000;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FV91 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os07t0118000-00;KEGG=Os07t0118000-00
Chr07	irgsp1_rep	CDS	967261	968685	.	-	0	Parent=Os07t0118000-00
Chr07	irgsp1_rep	mRNA	972942	973370	.	+	.	ID=Os07t0118200-00;Name=Os07t0118200-00;Locus_id=Os07g0118200;Note=Protein of unknown function DUF538 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001058764.2 (RefSeq);InterPro=Protein of unknown function DUF538 (IPR007493);TENOR=Os07t0118200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	972942	973370	.	+	0	Parent=Os07t0118200-00
Chr07	irgsp1_rep	mRNA	976321	976749	.	+	.	ID=Os07t0118250-00;Name=Os07t0118250-00;Locus_id=Os07g0118250;Note=Protein of unknown function DUF538 family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001175024.1 (RefSeq);InterPro=Protein of unknown function DUF538 (IPR007493);TENOR=Os07t0118250-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	976321	976749	.	+	0	Parent=Os07t0118250-00
Chr07	irgsp1_rep	mRNA	978442	981781	.	+	.	ID=Os07t0118300-01;Name=Os07t0118300-01;Locus_id=Os07g0118300;Note=Similar to predicted protein.;Transcript_evidence=AK287846 (DDBJ%2C Best hit);ORF_evidence=A3BG22 (UniProt);InterPro=Golgi apparatus membrane protein TVP15 (IPR013714);NIAS_FLcDNA=J065194P05;Oryzabase=21637;TENOR=Os07t0118300-01;KEGG=Os07t0118300-01
Chr07	irgsp1_rep	five_prime_UTR	978442	978526	.	+	.	Parent=Os07t0118300-01
Chr07	irgsp1_rep	CDS	978527	978757	.	+	0	Parent=Os07t0118300-01
Chr07	irgsp1_rep	CDS	978842	978937	.	+	0	Parent=Os07t0118300-01
Chr07	irgsp1_rep	CDS	979479	979519	.	+	0	Parent=Os07t0118300-01
Chr07	irgsp1_rep	CDS	980550	980661	.	+	1	Parent=Os07t0118300-01
Chr07	irgsp1_rep	CDS	981100	981180	.	+	0	Parent=Os07t0118300-01
Chr07	irgsp1_rep	CDS	981502	981567	.	+	0	Parent=Os07t0118300-01
Chr07	irgsp1_rep	three_prime_UTR	981568	981781	.	+	.	Parent=Os07t0118300-01
Chr07	irgsp1_rep	mRNA	1006786	1009079	.	+	.	ID=Os07t0118800-01;Name=Os07t0118800-01;Locus_id=Os07g0118800;Oryzabase Gene Symbol Synonym(s)=OsFbox330%2C Os_F0521;Oryzabase Gene Name Synonym(s)=F-box protein 330;Note=Hypothetical conserved gene.;Transcript_evidence=AK110970 (DDBJ%2C Best hit);ORF_evidence=A3BG24 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-174-B10;Oryzabase=17106;Expression=AK110970;TENOR=Os07t0118800-01;KEGG=Os07t0118800-01
Chr07	irgsp1_rep	five_prime_UTR	1006786	1006817	.	+	.	Parent=Os07t0118800-01
Chr07	irgsp1_rep	CDS	1006818	1007852	.	+	0	Parent=Os07t0118800-01
Chr07	irgsp1_rep	CDS	1008645	1008923	.	+	0	Parent=Os07t0118800-01
Chr07	irgsp1_rep	three_prime_UTR	1008924	1009079	.	+	.	Parent=Os07t0118800-01
Chr07	irgsp1_rep	mRNA	1006844	1010136	.	+	.	ID=Os07t0118800-02;Name=Os07t0118800-02;Locus_id=Os07g0118800;Oryzabase Gene Symbol Synonym(s)=OsFbox330%2C Os_F0521;Oryzabase Gene Name Synonym(s)=F-box protein 330;Note=F-box domain%2C Skp2-like domain containing protein.;Transcript_evidence=AK099452 (DDBJ%2C Best hit);ORF_evidence=A3BG24 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013022I16;Oryzabase=17106;TENOR=Os07t0118800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	1006844	1006844	.	+	.	Parent=Os07t0118800-02
Chr07	irgsp1_rep	CDS	1006845	1007852	.	+	0	Parent=Os07t0118800-02
Chr07	irgsp1_rep	CDS	1008645	1008827	.	+	0	Parent=Os07t0118800-02
Chr07	irgsp1_rep	CDS	1009398	1009616	.	+	0	Parent=Os07t0118800-02
Chr07	irgsp1_rep	CDS	1009682	1009690	.	+	0	Parent=Os07t0118800-02
Chr07	irgsp1_rep	three_prime_UTR	1009691	1010136	.	+	.	Parent=Os07t0118800-02
Chr07	irgsp1_rep	mRNA	1011880	1014985	.	+	.	ID=Os07t0118900-01;Name=Os07t0118900-01;Locus_id=Os07g0118900;Oryzabase Gene Symbol Synonym(s)=OsFbox331%2C Os_F0273;Oryzabase Gene Name Synonym(s)=F-box protein 331;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK073134 (DDBJ%2C Best hit);ORF_evidence=B8B6T3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033023F16;Oryzabase=17107;Expression=AK073134;TENOR=Os07t0118900-01;KEGG=Os07t0118900-01
Chr07	irgsp1_rep	five_prime_UTR	1011880	1011925	.	+	.	Parent=Os07t0118900-01
Chr07	irgsp1_rep	CDS	1011926	1012948	.	+	0	Parent=Os07t0118900-01
Chr07	irgsp1_rep	CDS	1013722	1013910	.	+	0	Parent=Os07t0118900-01
Chr07	irgsp1_rep	CDS	1014504	1014848	.	+	0	Parent=Os07t0118900-01
Chr07	irgsp1_rep	three_prime_UTR	1014849	1014985	.	+	.	Parent=Os07t0118900-01
Chr07	irgsp1_rep	mRNA	1012774	1014985	.	+	.	ID=Os07t0118900-02;Name=Os07t0118900-02;Locus_id=Os07g0118900;Oryzabase Gene Symbol Synonym(s)=OsFbox331%2C Os_F0273;Oryzabase Gene Name Synonym(s)=F-box protein 331;Note=Hypothetical conserved gene.;Transcript_evidence=AK063837 (DDBJ%2C Best hit);ORF_evidence=B8B6T3 (UniProt);NIAS_FLcDNA=001-122-B09;Oryzabase=17107;Expression=AK063837;TENOR=Os07t0118900-02;KEGG=Os07t0118900-02
Chr07	irgsp1_rep	five_prime_UTR	1012774	1012774	.	+	.	Parent=Os07t0118900-02
Chr07	irgsp1_rep	CDS	1012775	1012948	.	+	0	Parent=Os07t0118900-02
Chr07	irgsp1_rep	CDS	1013722	1013910	.	+	0	Parent=Os07t0118900-02
Chr07	irgsp1_rep	CDS	1014504	1014848	.	+	0	Parent=Os07t0118900-02
Chr07	irgsp1_rep	three_prime_UTR	1014849	1014985	.	+	.	Parent=Os07t0118900-02
Chr07	irgsp1_rep	mRNA	1015354	1021607	.	-	.	ID=Os07t0119000-01;Name=Os07t0119000-01;Locus_id=Os07g0119000;CGSNL Gene Symbol=MAPKKK11;CGSNL Gene Name=MAPK KINASE KINASE 11;Oryzabase Gene Symbol Synonym(s)=OsMAPKKK11;Oryzabase Gene Name Synonym(s)=MAPK kinase kinase 11;Note=Similar to MAP3K gamma protein kinase (Fragment).;Transcript_evidence=AK069889 (DDBJ%2C Best hit);ORF_evidence=B6SVE4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023040N08;Oryzabase=21698;Expression=AK069889;TENOR=Os07t0119000-01;KEGG=Os07t0119000-01
Chr07	irgsp1_rep	five_prime_UTR	1021501	1021607	.	-	.	Parent=Os07t0119000-01
Chr07	irgsp1_rep	CDS	1020965	1021500	.	-	0	Parent=Os07t0119000-01
Chr07	irgsp1_rep	CDS	1019997	1020647	.	-	1	Parent=Os07t0119000-01
Chr07	irgsp1_rep	CDS	1019815	1019902	.	-	1	Parent=Os07t0119000-01
Chr07	irgsp1_rep	CDS	1019428	1019490	.	-	0	Parent=Os07t0119000-01
Chr07	irgsp1_rep	CDS	1019189	1019352	.	-	0	Parent=Os07t0119000-01
Chr07	irgsp1_rep	CDS	1018129	1018204	.	-	1	Parent=Os07t0119000-01
Chr07	irgsp1_rep	CDS	1017650	1017709	.	-	0	Parent=Os07t0119000-01
Chr07	irgsp1_rep	CDS	1016925	1017044	.	-	0	Parent=Os07t0119000-01
Chr07	irgsp1_rep	CDS	1016420	1016629	.	-	0	Parent=Os07t0119000-01
Chr07	irgsp1_rep	CDS	1016271	1016350	.	-	0	Parent=Os07t0119000-01
Chr07	irgsp1_rep	CDS	1015952	1016165	.	-	1	Parent=Os07t0119000-01
Chr07	irgsp1_rep	three_prime_UTR	1015354	1015951	.	-	.	Parent=Os07t0119000-01
Chr07	irgsp1_rep	mRNA	1023878	1026370	.	+	.	ID=Os07t0119100-00;Name=Os07t0119100-00;Locus_id=Os07g0119100;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A3BG27 (UniProt);TENOR=Os07t0119100-00
Chr07	irgsp1_rep	CDS	1023878	1024057	.	+	0	Parent=Os07t0119100-00
Chr07	irgsp1_rep	CDS	1025461	1025579	.	+	0	Parent=Os07t0119100-00
Chr07	irgsp1_rep	CDS	1025952	1026118	.	+	1	Parent=Os07t0119100-00
Chr07	irgsp1_rep	CDS	1026354	1026370	.	+	2	Parent=Os07t0119100-00
Chr07	irgsp1_rep	mRNA	1046046	1047972	.	+	.	ID=Os07t0119300-01;Name=Os07t0119300-01;Locus_id=Os07g0119300;Note=Homeodomain-related domain containing protein.;Transcript_evidence=AK070421 (DDBJ%2C Best hit);ORF_evidence=NP_001150001.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J023048M12;Expression=AK070421;TENOR=Os07t0119300-01;KEGG=Os07t0119300-01
Chr07	irgsp1_rep	five_prime_UTR	1046046	1046154	.	+	.	Parent=Os07t0119300-01
Chr07	irgsp1_rep	CDS	1046155	1046365	.	+	0	Parent=Os07t0119300-01
Chr07	irgsp1_rep	CDS	1046457	1046611	.	+	2	Parent=Os07t0119300-01
Chr07	irgsp1_rep	CDS	1046702	1047092	.	+	0	Parent=Os07t0119300-01
Chr07	irgsp1_rep	CDS	1047238	1047314	.	+	2	Parent=Os07t0119300-01
Chr07	irgsp1_rep	CDS	1047447	1047680	.	+	0	Parent=Os07t0119300-01
Chr07	irgsp1_rep	three_prime_UTR	1047681	1047972	.	+	.	Parent=Os07t0119300-01
Chr07	irgsp1_rep	mRNA	1055475	1058127	.	+	.	ID=Os07t0119400-01;Name=Os07t0119400-01;Locus_id=Os07g0119400;RAP-DB Gene Symbol Synonym(s)=OsAAO3;RAP-DB Gene Name Synonym(s)=ascorbate oxidase 3;CGSNL Gene Symbol=AAO3;CGSNL Gene Name=ASCORBATE OXIDASE 3;Oryzabase Gene Symbol Synonym(s)=OsAAO3;Oryzabase Gene Name Synonym(s)=ascorbate oxidase 3;Note=Ascorbate oxidase%2C Abiotic stress response;Transcript_evidence=AK102922;ORF_evidence=Q7XIF0;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: copper ion binding (GO:0005507),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Cupredoxin (IPR008972),Multicopper oxidase%2C type 3 (IPR011707),Ascorbate oxidase homologue%2C first cupredoxin domain (IPR034273),Multicopper oxidase%2C type 1 (IPR001117),Multicopper oxidase%2C type 2 (IPR011706);NIAS_FLcDNA=J033114C13;Manual Curation=November 30%2C 2017;Literature_PMID=28261251;Oryzabase=21628;Expression=AK102922;TENOR=Os07t0119400-01;KEGG=Os07t0119400-01
Chr07	irgsp1_rep	five_prime_UTR	1055475	1055494	.	+	.	Parent=Os07t0119400-01
Chr07	irgsp1_rep	CDS	1055495	1055644	.	+	0	Parent=Os07t0119400-01
Chr07	irgsp1_rep	CDS	1055767	1056971	.	+	0	Parent=Os07t0119400-01
Chr07	irgsp1_rep	CDS	1057102	1057180	.	+	1	Parent=Os07t0119400-01
Chr07	irgsp1_rep	CDS	1057619	1057822	.	+	0	Parent=Os07t0119400-01
Chr07	irgsp1_rep	three_prime_UTR	1057823	1058127	.	+	.	Parent=Os07t0119400-01
Chr07	irgsp1_rep	mRNA	1055540	1057811	.	-	.	ID=Os07t0119475-00;Name=Os07t0119475-00;Locus_id=Os07g0119475;Note=Hypothetical protein.;Transcript_evidence=tplb0021n10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0119475-00
Chr07	irgsp1_rep	five_prime_UTR	1057547	1057811	.	-	.	Parent=Os07t0119475-00
Chr07	irgsp1_rep	five_prime_UTR	1056943	1056976	.	-	.	Parent=Os07t0119475-00
Chr07	irgsp1_rep	CDS	1055759	1056942	.	-	0	Parent=Os07t0119475-00
Chr07	irgsp1_rep	CDS	1055616	1055631	.	-	1	Parent=Os07t0119475-00
Chr07	irgsp1_rep	three_prime_UTR	1055540	1055615	.	-	.	Parent=Os07t0119475-00
Chr07	irgsp1_rep	mRNA	1061348	1062408	.	-	.	ID=Os07t0119600-00;Name=Os07t0119600-00;Locus_id=Os07g0119600;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8LHY7 (UniProt);TENOR=Os07t0119600-00
Chr07	irgsp1_rep	CDS	1062283	1062408	.	-	0	Parent=Os07t0119600-00
Chr07	irgsp1_rep	CDS	1061951	1062069	.	-	0	Parent=Os07t0119600-00
Chr07	irgsp1_rep	CDS	1061348	1061576	.	-	1	Parent=Os07t0119600-00
Chr07	irgsp1_rep	mRNA	1067127	1067558	.	+	.	ID=Os07t0119800-00;Name=Os07t0119800-00;Locus_id=Os07g0119800;Note=Protein of unknown function DUF538 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001058773.1 (RefSeq);InterPro=Protein of unknown function DUF538 (IPR007493);TENOR=Os07t0119800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	1067127	1067558	.	+	0	Parent=Os07t0119800-00
Chr07	irgsp1_rep	mRNA	1076918	1077346	.	-	.	ID=Os07t0120000-00;Name=Os07t0120000-00;Locus_id=Os07g0120000;Note=Similar to predicted protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001058774.2 (RefSeq);InterPro=Protein of unknown function DUF538 (IPR007493);TENOR=Os07t0120000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	1076918	1077346	.	-	0	Parent=Os07t0120000-00
Chr07	irgsp1_rep	mRNA	1079633	1080575	.	-	.	ID=Os07t0120051-00;Name=Os07t0120051-00;Locus_id=Os07g0120051;Note=Similar to predicted protein.;Transcript_evidence=FP099222 (DDBJ);ORF_evidence=B9GA04 (UniProt);TENOR=Os07t0120051-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	1080493	1080575	.	-	.	Parent=Os07t0120051-00
Chr07	irgsp1_rep	CDS	1080416	1080492	.	-	0	Parent=Os07t0120051-00
Chr07	irgsp1_rep	CDS	1079633	1080323	.	-	1	Parent=Os07t0120051-00
Chr07	irgsp1_rep	mRNA	1081001	1081638	.	-	.	ID=Os07t0120100-01;Name=Os07t0120100-01;Locus_id=Os07g0120100;Note=Protein of unknown function DUF538 family protein.;Transcript_evidence=AK063034 (DDBJ%2C Best hit);ORF_evidence=B8B6T6 (UniProt);InterPro=Protein of unknown function DUF538 (IPR007493);NIAS_FLcDNA=001-110-C08;Expression=AK063034;TENOR=Os07t0120100-01;KEGG=Os07t0120100-01
Chr07	irgsp1_rep	five_prime_UTR	1081563	1081638	.	-	.	Parent=Os07t0120100-01
Chr07	irgsp1_rep	CDS	1081134	1081562	.	-	0	Parent=Os07t0120100-01
Chr07	irgsp1_rep	three_prime_UTR	1081001	1081133	.	-	.	Parent=Os07t0120100-01
Chr07	irgsp1_rep	mRNA	1082889	1084425	.	-	.	ID=Os07t0120200-00;Name=Os07t0120200-00;Locus_id=Os07g0120200;Oryzabase Gene Symbol Synonym(s)=OsFbox332%2C Os_F0267;Oryzabase Gene Name Synonym(s)=F-box protein 332;Note=F-box domain%2C Skp2-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8LHX9 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);Oryzabase=17108;TENOR=Os07t0120200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	1083354	1084425	.	-	0	Parent=Os07t0120200-00
Chr07	irgsp1_rep	CDS	1082889	1082941	.	-	2	Parent=Os07t0120200-00
Chr07	irgsp1_rep	mRNA	1085802	1086230	.	-	.	ID=Os07t0120300-00;Name=Os07t0120300-00;Locus_id=Os07g0120300;Note=Similar to predicted protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8LHX8 (UniProt);InterPro=Protein of unknown function DUF538 (IPR007493);TENOR=Os07t0120300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	1085802	1086230	.	-	0	Parent=Os07t0120300-00
Chr07	irgsp1_rep	mRNA	1087395	1089210	.	-	.	ID=Os07t0120400-01;Name=Os07t0120400-01;Locus_id=Os07g0120400;Oryzabase Gene Symbol Synonym(s)=OsFbox333%2C Os_F0159;Oryzabase Gene Name Synonym(s)=F-box protein 333;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK107254 (DDBJ%2C Best hit);ORF_evidence=A2YHN7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-125-G06;Oryzabase=17109;Expression=AK107254;TENOR=Os07t0120400-01;KEGG=Os07t0120400-01
Chr07	irgsp1_rep	five_prime_UTR	1089178	1089210	.	-	.	Parent=Os07t0120400-01
Chr07	irgsp1_rep	CDS	1088112	1089177	.	-	0	Parent=Os07t0120400-01
Chr07	irgsp1_rep	CDS	1087632	1087672	.	-	2	Parent=Os07t0120400-01
Chr07	irgsp1_rep	three_prime_UTR	1087395	1087631	.	-	.	Parent=Os07t0120400-01
Chr07	irgsp1_rep	mRNA	1089664	1090092	.	-	.	ID=Os07t0120500-00;Name=Os07t0120500-00;Locus_id=Os07g0120500;Oryzabase Gene Symbol Synonym(s)=OsEnS-91;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 91;Note=Similar to predicted protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001175026.1 (RefSeq);InterPro=Protein of unknown function DUF538 (IPR007493);Oryzabase=18401;TENOR=Os07t0120500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	1089664	1090092	.	-	0	Parent=Os07t0120500-00
Chr07	irgsp1_rep	mRNA	1095077	1095776	.	-	.	ID=Os07t0120650-01;Name=Os07t0120650-01;Locus_id=Os07g0120650;Note=Protein of unknown function DUF538 family protein.;Transcript_evidence=AK241724 (DDBJ%2C Best hit);ORF_evidence=NP_001175027.1 (RefSeq);InterPro=Protein of unknown function DUF538 (IPR007493);NIAS_FLcDNA=J065198L06;TENOR=Os07t0120650-01;KEGG=Os07t0120650-01
Chr07	irgsp1_rep	five_prime_UTR	1095685	1095776	.	-	.	Parent=Os07t0120650-01
Chr07	irgsp1_rep	CDS	1095256	1095684	.	-	0	Parent=Os07t0120650-01
Chr07	irgsp1_rep	three_prime_UTR	1095077	1095255	.	-	.	Parent=Os07t0120650-01
Chr07	irgsp1_rep	mRNA	1096381	1101697	.	-	.	ID=Os07t0120700-01;Name=Os07t0120700-01;Locus_id=Os07g0120700;Note=Conserved hypothetical protein.;Transcript_evidence=AK101981 (DDBJ%2C Best hit);ORF_evidence=Q7XIE7 (UniProt);NIAS_FLcDNA=J033077K20;Expression=AK101981;TENOR=Os07t0120700-01;KEGG=Os07t0120700-01
Chr07	irgsp1_rep	five_prime_UTR	1101549	1101697	.	-	.	Parent=Os07t0120700-01
Chr07	irgsp1_rep	CDS	1101432	1101548	.	-	0	Parent=Os07t0120700-01
Chr07	irgsp1_rep	CDS	1101265	1101348	.	-	0	Parent=Os07t0120700-01
Chr07	irgsp1_rep	CDS	1100804	1100905	.	-	0	Parent=Os07t0120700-01
Chr07	irgsp1_rep	CDS	1100014	1100100	.	-	0	Parent=Os07t0120700-01
Chr07	irgsp1_rep	CDS	1099298	1099924	.	-	0	Parent=Os07t0120700-01
Chr07	irgsp1_rep	CDS	1098650	1099117	.	-	0	Parent=Os07t0120700-01
Chr07	irgsp1_rep	CDS	1098143	1098204	.	-	0	Parent=Os07t0120700-01
Chr07	irgsp1_rep	CDS	1097953	1098052	.	-	1	Parent=Os07t0120700-01
Chr07	irgsp1_rep	CDS	1097391	1097470	.	-	0	Parent=Os07t0120700-01
Chr07	irgsp1_rep	CDS	1097014	1097304	.	-	1	Parent=Os07t0120700-01
Chr07	irgsp1_rep	CDS	1096839	1096875	.	-	1	Parent=Os07t0120700-01
Chr07	irgsp1_rep	three_prime_UTR	1096381	1096838	.	-	.	Parent=Os07t0120700-01
Chr07	irgsp1_rep	mRNA	1101854	1105389	.	+	.	ID=Os07t0120800-01;Name=Os07t0120800-01;Locus_id=Os07g0120800;Note=Protein of unknown function DUF1719%2C Oryza sativa family protein.;Transcript_evidence=AK103259 (DDBJ%2C Best hit);ORF_evidence=B9FV97 (UniProt);InterPro=Protein of unknown function DUF1719%2C Oryza sativa (IPR013181);NIAS_FLcDNA=J033124C09;Expression=AK103259;TENOR=Os07t0120800-01;KEGG=Os07t0120800-01
Chr07	irgsp1_rep	five_prime_UTR	1101854	1103704	.	+	.	Parent=Os07t0120800-01
Chr07	irgsp1_rep	CDS	1103705	1105180	.	+	0	Parent=Os07t0120800-01
Chr07	irgsp1_rep	three_prime_UTR	1105181	1105389	.	+	.	Parent=Os07t0120800-01
Chr07	irgsp1_rep	mRNA	1105853	1112293	.	+	.	ID=Os07t0120900-01;Name=Os07t0120900-01;Locus_id=Os07g0120900;Note=Protein of unknown function DUF1719%2C Oryza sativa family protein.;Transcript_evidence=AK073714 (DDBJ%2C Best hit);ORF_evidence=A2YHP4 (UniProt);InterPro=Protein of unknown function DUF1719%2C Oryza sativa (IPR013181);NIAS_FLcDNA=J033055I03;Expression=AK073714;TENOR=Os07t0120900-01;KEGG=Os07t0120900-01
Chr07	irgsp1_rep	five_prime_UTR	1105853	1106033	.	+	.	Parent=Os07t0120900-01
Chr07	irgsp1_rep	five_prime_UTR	1109129	1109258	.	+	.	Parent=Os07t0120900-01
Chr07	irgsp1_rep	five_prime_UTR	1109370	1109519	.	+	.	Parent=Os07t0120900-01
Chr07	irgsp1_rep	five_prime_UTR	1109638	1109711	.	+	.	Parent=Os07t0120900-01
Chr07	irgsp1_rep	five_prime_UTR	1110290	1110361	.	+	.	Parent=Os07t0120900-01
Chr07	irgsp1_rep	five_prime_UTR	1110490	1110498	.	+	.	Parent=Os07t0120900-01
Chr07	irgsp1_rep	CDS	1110499	1112022	.	+	0	Parent=Os07t0120900-01
Chr07	irgsp1_rep	three_prime_UTR	1112023	1112293	.	+	.	Parent=Os07t0120900-01
Chr07	irgsp1_rep	mRNA	1106840	1108803	.	+	.	ID=Os07t0121000-01;Name=Os07t0121000-01;Locus_id=Os07g0121000;Note=Protein of unknown function DUF1719%2C Oryza sativa family protein.;Transcript_evidence=AK072975 (DDBJ%2C Best hit);ORF_evidence=A2YHP3 (UniProt);InterPro=Protein of unknown function DUF1719%2C Oryza sativa (IPR013181);NIAS_FLcDNA=J023148M03;Expression=AK072975;TENOR=Os07t0121000-01;KEGG=Os07t0121000-01
Chr07	irgsp1_rep	five_prime_UTR	1106840	1107057	.	+	.	Parent=Os07t0121000-01
Chr07	irgsp1_rep	CDS	1107058	1108596	.	+	0	Parent=Os07t0121000-01
Chr07	irgsp1_rep	three_prime_UTR	1108597	1108803	.	+	.	Parent=Os07t0121000-01
Chr07	irgsp1_rep	mRNA	1113969	1116298	.	+	.	ID=Os07t0121100-01;Name=Os07t0121100-01;Locus_id=Os07g0121100;Note=Protein of unknown function DUF1719%2C Oryza sativa family protein.;Transcript_evidence=AK102706 (DDBJ%2C Best hit);ORF_evidence=B8B6T9 (UniProt);InterPro=Protein of unknown function DUF1719%2C Oryza sativa (IPR013181);NIAS_FLcDNA=J033104A05;Expression=AK102706;TENOR=Os07t0121100-01;KEGG=Os07t0121100-01
Chr07	irgsp1_rep	five_prime_UTR	1113969	1114336	.	+	.	Parent=Os07t0121100-01
Chr07	irgsp1_rep	CDS	1114337	1115869	.	+	0	Parent=Os07t0121100-01
Chr07	irgsp1_rep	three_prime_UTR	1115870	1116298	.	+	.	Parent=Os07t0121100-01
Chr07	irgsp1_rep	mRNA	1117768	1120936	.	-	.	ID=Os07t0121200-00;Name=Os07t0121200-00;Locus_id=Os07g0121200;Note=Similar to LRR receptor-like kinase.;Transcript_evidence=BT039865 (DDBJ);ORF_evidence=D0VMS4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os07t0121200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	1118251	1120936	.	-	0	Parent=Os07t0121200-00
Chr07	irgsp1_rep	CDS	1117786	1118153	.	-	2	Parent=Os07t0121200-00
Chr07	irgsp1_rep	three_prime_UTR	1117768	1117785	.	-	.	Parent=Os07t0121200-00
Chr07	irgsp1_rep	mRNA	1127345	1127912	.	-	.	ID=Os07t0121401-01;Name=Os07t0121401-01;Locus_id=Os07g0121401;Note=Hypothetical conserved gene.;Transcript_evidence=AK243421 (DDBJ%2C Best hit);ORF_evidence=Q259J5 (UniProt);NIAS_FLcDNA=J100066O17;TENOR=Os07t0121401-01;KEGG=Os07t0121401-01
Chr07	irgsp1_rep	five_prime_UTR	1127911	1127912	.	-	.	Parent=Os07t0121401-01
Chr07	irgsp1_rep	CDS	1127491	1127910	.	-	0	Parent=Os07t0121401-01
Chr07	irgsp1_rep	three_prime_UTR	1127345	1127490	.	-	.	Parent=Os07t0121401-01
Chr07	irgsp1_rep	mRNA	1127359	1127947	.	+	.	ID=Os07t0121500-00;Name=Os07t0121500-00;Locus_id=Os07g0121500;Note=Hypothetical conserved gene.;Transcript_evidence=AK289205 (DDBJ%2C Secondary hit);ORF_evidence=B8BM69 (UniProt);TENOR=Os07t0121500-00
Chr07	irgsp1_rep	five_prime_UTR	1127359	1127673	.	+	.	Parent=Os07t0121500-00
Chr07	irgsp1_rep	CDS	1127674	1127947	.	+	0	Parent=Os07t0121500-00
Chr07	irgsp1_rep	mRNA	1140062	1142002	.	-	.	ID=Os07t0121750-01;Name=Os07t0121750-01;Locus_id=Os07g0121750;Note=Conserved hypothetical protein.;Transcript_evidence=AK243088 (DDBJ%2C Best hit);ORF_evidence=NP_001175029.1 (RefSeq);NIAS_FLcDNA=J100022G12;TENOR=Os07t0121750-01;KEGG=Os07t0121750-01
Chr07	irgsp1_rep	five_prime_UTR	1141790	1142002	.	-	.	Parent=Os07t0121750-01
Chr07	irgsp1_rep	five_prime_UTR	1140874	1141717	.	-	.	Parent=Os07t0121750-01
Chr07	irgsp1_rep	CDS	1140439	1140873	.	-	0	Parent=Os07t0121750-01
Chr07	irgsp1_rep	three_prime_UTR	1140062	1140438	.	-	.	Parent=Os07t0121750-01
Chr07	irgsp1_rep	mRNA	1143552	1145530	.	+	.	ID=Os07t0121800-01;Name=Os07t0121800-01;Locus_id=Os07g0121800;Note=Protein of unknown function DUF1719%2C Oryza sativa domain containing protein.;Transcript_evidence=AK064136 (DDBJ%2C Best hit);ORF_evidence=B8B6U2 (UniProt);InterPro=Protein of unknown function DUF1719%2C Oryza sativa (IPR013181);NIAS_FLcDNA=002-102-G06;TENOR=Os07t0121800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	1143552	1143661	.	+	.	Parent=Os07t0121800-01
Chr07	irgsp1_rep	CDS	1143662	1143694	.	+	0	Parent=Os07t0121800-01
Chr07	irgsp1_rep	CDS	1143779	1145200	.	+	0	Parent=Os07t0121800-01
Chr07	irgsp1_rep	three_prime_UTR	1145201	1145530	.	+	.	Parent=Os07t0121800-01
Chr07	irgsp1_rep	mRNA	1150138	1152196	.	+	.	ID=Os07t0122000-01;Name=Os07t0122000-01;Locus_id=Os07g0122000;Note=Protein of unknown function DUF1719%2C Oryza sativa family protein.;Transcript_evidence=AK102508 (DDBJ%2C Best hit);ORF_evidence=B8B6U3 (UniProt);InterPro=Protein of unknown function DUF1719%2C Oryza sativa (IPR013181);NIAS_FLcDNA=J033095G03;Expression=AK102508;TENOR=Os07t0122000-01;KEGG=Os07t0122000-01
Chr07	irgsp1_rep	five_prime_UTR	1150138	1150366	.	+	.	Parent=Os07t0122000-01
Chr07	irgsp1_rep	five_prime_UTR	1150450	1150465	.	+	.	Parent=Os07t0122000-01
Chr07	irgsp1_rep	CDS	1150466	1151710	.	+	0	Parent=Os07t0122000-01
Chr07	irgsp1_rep	three_prime_UTR	1151711	1152196	.	+	.	Parent=Os07t0122000-01
Chr07	irgsp1_rep	mRNA	1153268	1155205	.	+	.	ID=Os07t0122100-01;Name=Os07t0122100-01;Locus_id=Os07g0122100;Note=Protein of unknown function DUF1719%2C Oryza sativa family protein.;Transcript_evidence=AK072846 (DDBJ%2C Best hit);ORF_evidence=Q7XIE3 (UniProt);InterPro=Protein of unknown function DUF1719%2C Oryza sativa (IPR013181);NIAS_FLcDNA=J023143D15;Expression=AK072846;TENOR=Os07t0122100-01;KEGG=Os07t0122100-01
Chr07	irgsp1_rep	five_prime_UTR	1153268	1153269	.	+	.	Parent=Os07t0122100-01
Chr07	irgsp1_rep	CDS	1153270	1154646	.	+	0	Parent=Os07t0122100-01
Chr07	irgsp1_rep	three_prime_UTR	1154647	1155205	.	+	.	Parent=Os07t0122100-01
Chr07	irgsp1_rep	mRNA	1156619	1159170	.	+	.	ID=Os07t0122200-01;Name=Os07t0122200-01;Locus_id=Os07g0122200;Note=Protein of unknown function DUF1719%2C Oryza sativa family protein.;Transcript_evidence=AK120172 (DDBJ%2C Best hit);ORF_evidence=B9FVA2 (UniProt);InterPro=Protein of unknown function DUF1719%2C Oryza sativa (IPR013181);NIAS_FLcDNA=J013032N21;Expression=AK120172;TENOR=Os07t0122200-01;KEGG=Os07t0122200-01
Chr07	irgsp1_rep	five_prime_UTR	1156619	1156767	.	+	.	Parent=Os07t0122200-01
Chr07	irgsp1_rep	five_prime_UTR	1156895	1156922	.	+	.	Parent=Os07t0122200-01
Chr07	irgsp1_rep	CDS	1156923	1158446	.	+	0	Parent=Os07t0122200-01
Chr07	irgsp1_rep	three_prime_UTR	1158447	1159170	.	+	.	Parent=Os07t0122200-01
Chr07	irgsp1_rep	mRNA	1159806	1162675	.	+	.	ID=Os07t0122300-01;Name=Os07t0122300-01;Locus_id=Os07g0122300;Note=Protein of unknown function DUF1719%2C Oryza sativa family protein.;Transcript_evidence=AK103212 (DDBJ%2C Best hit);ORF_evidence=A2YHQ1 (UniProt);InterPro=Protein of unknown function DUF1719%2C Oryza sativa (IPR013181);NIAS_FLcDNA=J033122M09;Expression=AK103212;TENOR=Os07t0122300-01;KEGG=Os07t0122300-01
Chr07	irgsp1_rep	five_prime_UTR	1159806	1160106	.	+	.	Parent=Os07t0122300-01
Chr07	irgsp1_rep	five_prime_UTR	1160790	1160820	.	+	.	Parent=Os07t0122300-01
Chr07	irgsp1_rep	CDS	1160821	1162362	.	+	0	Parent=Os07t0122300-01
Chr07	irgsp1_rep	three_prime_UTR	1162363	1162675	.	+	.	Parent=Os07t0122300-01
Chr07	irgsp1_rep	mRNA	1159845	1163369	.	+	.	ID=Os07t0122300-02;Name=Os07t0122300-02;Locus_id=Os07g0122300;Note=Protein of unknown function DUF1719%2C Oryza sativa family protein.;Transcript_evidence=AK119295 (DDBJ%2C Best hit);ORF_evidence=A2YHQ1 (UniProt);InterPro=Protein of unknown function DUF1719%2C Oryza sativa (IPR013181);NIAS_FLcDNA=001-130-E05;Expression=AK119295;TENOR=Os07t0122300-02;KEGG=Os07t0122300-02
Chr07	irgsp1_rep	five_prime_UTR	1159845	1160106	.	+	.	Parent=Os07t0122300-02
Chr07	irgsp1_rep	five_prime_UTR	1160790	1160820	.	+	.	Parent=Os07t0122300-02
Chr07	irgsp1_rep	CDS	1160821	1162362	.	+	0	Parent=Os07t0122300-02
Chr07	irgsp1_rep	three_prime_UTR	1162363	1163369	.	+	.	Parent=Os07t0122300-02
Chr07	irgsp1_rep	mRNA	1164617	1164862	.	+	.	ID=Os07t0122350-00;Name=Os07t0122350-00;Locus_id=Os07g0122350;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6Z4S7 (UniProt);TENOR=Os07t0122350-00;KEGG=Os07t0122350-00
Chr07	irgsp1_rep	CDS	1164617	1164862	.	+	0	Parent=Os07t0122350-00
Chr07	irgsp1_rep	mRNA	1165824	1169480	.	+	.	ID=Os07t0122400-01;Name=Os07t0122400-01;Locus_id=Os07g0122400;Note=Tetratricopeptide region domain containing protein.;Transcript_evidence=AK103581 (DDBJ%2C Best hit);ORF_evidence=B6SI86 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide%2C SHNi-TPR domain (IPR019544),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J033133A10;Expression=AK103581;TENOR=Os07t0122400-01;KEGG=Os07t0122400-01
Chr07	irgsp1_rep	five_prime_UTR	1165824	1165902	.	+	.	Parent=Os07t0122400-01
Chr07	irgsp1_rep	CDS	1165903	1166144	.	+	0	Parent=Os07t0122400-01
Chr07	irgsp1_rep	CDS	1166839	1167074	.	+	1	Parent=Os07t0122400-01
Chr07	irgsp1_rep	CDS	1167808	1168017	.	+	2	Parent=Os07t0122400-01
Chr07	irgsp1_rep	CDS	1168098	1168188	.	+	2	Parent=Os07t0122400-01
Chr07	irgsp1_rep	CDS	1168543	1168780	.	+	1	Parent=Os07t0122400-01
Chr07	irgsp1_rep	CDS	1168970	1169362	.	+	0	Parent=Os07t0122400-01
Chr07	irgsp1_rep	three_prime_UTR	1169363	1169480	.	+	.	Parent=Os07t0122400-01
Chr07	irgsp1_rep	mRNA	1180245	1182969	.	+	.	ID=Os07t0122900-01;Name=Os07t0122900-01;Locus_id=Os07g0122900;Oryzabase Gene Symbol Synonym(s)=OsFbox336%2C Os_F0293;Oryzabase Gene Name Synonym(s)=F-box protein 336;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK070767 (DDBJ%2C Best hit);ORF_evidence=A3BG56 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023069J11;Oryzabase=17112;Expression=AK070767;TENOR=Os07t0122900-01;KEGG=Os07t0122900-01
Chr07	irgsp1_rep	five_prime_UTR	1180245	1180291	.	+	.	Parent=Os07t0122900-01
Chr07	irgsp1_rep	CDS	1180292	1181452	.	+	0	Parent=Os07t0122900-01
Chr07	irgsp1_rep	three_prime_UTR	1181453	1182969	.	+	.	Parent=Os07t0122900-01
Chr07	irgsp1_rep	mRNA	1183280	1185666	.	-	.	ID=Os07t0123000-01;Name=Os07t0123000-01;Locus_id=Os07g0123000;Oryzabase Gene Symbol Synonym(s)=OsFbox337%2C Os_F0302;Oryzabase Gene Name Synonym(s)=F-box protein 337;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK070836 (DDBJ%2C Best hit);ORF_evidence=A2YHQ5 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023071O06;Oryzabase=17113;Expression=AK070836;TENOR=Os07t0123000-01;KEGG=Os07t0123000-01
Chr07	irgsp1_rep	five_prime_UTR	1185641	1185666	.	-	.	Parent=Os07t0123000-01
Chr07	irgsp1_rep	CDS	1184518	1185640	.	-	0	Parent=Os07t0123000-01
Chr07	irgsp1_rep	CDS	1183843	1183964	.	-	2	Parent=Os07t0123000-01
Chr07	irgsp1_rep	three_prime_UTR	1183280	1183842	.	-	.	Parent=Os07t0123000-01
Chr07	irgsp1_rep	mRNA	1194474	1195091	.	+	.	ID=Os07t0123100-00;Name=Os07t0123100-00;Locus_id=Os07g0123100;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6Z4S0 (UniProt);TENOR=Os07t0123100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	1194474	1195091	.	+	0	Parent=Os07t0123100-00
Chr07	irgsp1_rep	mRNA	1195118	1195594	.	+	.	ID=Os07t0123200-01;Name=Os07t0123200-01;Locus_id=Os07g0123200;Note=Non-protein coding transcript.;Transcript_evidence=AK059668 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-031-F05;TENOR=Os07t0123200-01
Chr07	irgsp1_rep	exon	1195118	1195594	.	+	.	Parent=Os07t0123200-01
Chr07	irgsp1_rep	mRNA	1199217	1201351	.	-	.	ID=Os07t0123300-01;Name=Os07t0123300-01;Locus_id=Os07g0123300;Note=Conserved hypothetical protein.;Transcript_evidence=AK108490 (DDBJ%2C Best hit);ORF_evidence=A3BG59 (UniProt);NIAS_FLcDNA=002-143-G01;Expression=AK108490;TENOR=Os07t0123300-01;KEGG=Os07t0123300-01
Chr07	irgsp1_rep	five_prime_UTR	1201259	1201351	.	-	.	Parent=Os07t0123300-01
Chr07	irgsp1_rep	CDS	1201244	1201258	.	-	0	Parent=Os07t0123300-01
Chr07	irgsp1_rep	CDS	1201022	1201093	.	-	0	Parent=Os07t0123300-01
Chr07	irgsp1_rep	CDS	1199403	1200059	.	-	0	Parent=Os07t0123300-01
Chr07	irgsp1_rep	three_prime_UTR	1199217	1199402	.	-	.	Parent=Os07t0123300-01
Chr07	irgsp1_rep	mRNA	1202315	1203025	.	-	.	ID=Os07t0123400-01;Name=Os07t0123400-01;Locus_id=Os07g0123400;Note=Similar to ternary complex factor MIP1.;Transcript_evidence=AK240929 (DDBJ%2C Best hit);ORF_evidence=NP_001152436.1 (RefSeq);NIAS_FLcDNA=J065040J09;TENOR=Os07t0123400-01;KEGG=Os07t0123400-01
Chr07	irgsp1_rep	five_prime_UTR	1202946	1203025	.	-	.	Parent=Os07t0123400-01
Chr07	irgsp1_rep	CDS	1202595	1202945	.	-	0	Parent=Os07t0123400-01
Chr07	irgsp1_rep	three_prime_UTR	1202315	1202594	.	-	.	Parent=Os07t0123400-01
Chr07	irgsp1_rep	mRNA	1202528	1203538	.	+	.	ID=Os07t0123450-01;Name=Os07t0123450-01;Locus_id=Os07g0123450;Note=Hypothetical protein.;Transcript_evidence=AK108214 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-140-E02;Expression=AK108214;TENOR=Os07t0123450-01;KEGG=Os07t0123450-01
Chr07	irgsp1_rep	five_prime_UTR	1202528	1202570	.	+	.	Parent=Os07t0123450-01
Chr07	irgsp1_rep	CDS	1202571	1202927	.	+	0	Parent=Os07t0123450-01
Chr07	irgsp1_rep	three_prime_UTR	1202928	1203538	.	+	.	Parent=Os07t0123450-01
Chr07	irgsp1_rep	mRNA	1213610	1217544	.	-	.	ID=Os07t0123500-01;Name=Os07t0123500-01;Locus_id=Os07g0123500;Note=BTB/POZ fold domain containing protein.;Transcript_evidence=AK241177 (DDBJ%2C Best hit);ORF_evidence=NP_001058798.2 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069);NIAS_FLcDNA=J065118J05;TENOR=Os07t0123500-01;KEGG=Os07t0123500-01
Chr07	irgsp1_rep	five_prime_UTR	1217382	1217544	.	-	.	Parent=Os07t0123500-01
Chr07	irgsp1_rep	five_prime_UTR	1216618	1216724	.	-	.	Parent=Os07t0123500-01
Chr07	irgsp1_rep	CDS	1215982	1216617	.	-	0	Parent=Os07t0123500-01
Chr07	irgsp1_rep	CDS	1213858	1214805	.	-	0	Parent=Os07t0123500-01
Chr07	irgsp1_rep	three_prime_UTR	1213610	1213857	.	-	.	Parent=Os07t0123500-01
Chr07	irgsp1_rep	mRNA	1213858	1216621	.	+	.	ID=Os07t0123533-00;Name=Os07t0123533-00;Locus_id=Os07g0123533;Note=Hypothetical protein.;Transcript_evidence=tplb0045o13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0123533-00
Chr07	irgsp1_rep	five_prime_UTR	1213858	1214221	.	+	.	Parent=Os07t0123533-00
Chr07	irgsp1_rep	CDS	1214222	1214479	.	+	0	Parent=Os07t0123533-00
Chr07	irgsp1_rep	three_prime_UTR	1214480	1214792	.	+	.	Parent=Os07t0123533-00
Chr07	irgsp1_rep	three_prime_UTR	1215967	1216621	.	+	.	Parent=Os07t0123533-00
Chr07	irgsp1_rep	mRNA	1220492	1220565	.	+	.	ID=Os07t0123566-00;Name=Os07t0123566-00;Locus_id=Os07g0123566;Note=Non-protein coding transcript.;Transcript_evidence=X06284 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0123566-00
Chr07	irgsp1_rep	exon	1220492	1220565	.	+	.	Parent=Os07t0123566-00
Chr07	irgsp1_rep	mRNA	1228519	1238226	.	+	.	ID=Os07t0123601-01;Name=Os07t0123601-01;Locus_id=Os07g0123601;Note=Hypothetical gene.;Transcript_evidence=AK240861 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065022O21;TENOR=Os07t0123601-01;KEGG=Os07t0123601-01
Chr07	irgsp1_rep	five_prime_UTR	1228519	1228781	.	+	.	Parent=Os07t0123601-01
Chr07	irgsp1_rep	CDS	1228782	1228999	.	+	0	Parent=Os07t0123601-01
Chr07	irgsp1_rep	CDS	1229358	1229423	.	+	1	Parent=Os07t0123601-01
Chr07	irgsp1_rep	CDS	1229519	1229549	.	+	1	Parent=Os07t0123601-01
Chr07	irgsp1_rep	three_prime_UTR	1229550	1229588	.	+	.	Parent=Os07t0123601-01
Chr07	irgsp1_rep	three_prime_UTR	1229877	1229953	.	+	.	Parent=Os07t0123601-01
Chr07	irgsp1_rep	three_prime_UTR	1230215	1230351	.	+	.	Parent=Os07t0123601-01
Chr07	irgsp1_rep	three_prime_UTR	1230558	1230635	.	+	.	Parent=Os07t0123601-01
Chr07	irgsp1_rep	three_prime_UTR	1231351	1231516	.	+	.	Parent=Os07t0123601-01
Chr07	irgsp1_rep	three_prime_UTR	1231870	1231956	.	+	.	Parent=Os07t0123601-01
Chr07	irgsp1_rep	three_prime_UTR	1232239	1232276	.	+	.	Parent=Os07t0123601-01
Chr07	irgsp1_rep	three_prime_UTR	1232426	1232464	.	+	.	Parent=Os07t0123601-01
Chr07	irgsp1_rep	three_prime_UTR	1232553	1232699	.	+	.	Parent=Os07t0123601-01
Chr07	irgsp1_rep	three_prime_UTR	1232899	1232958	.	+	.	Parent=Os07t0123601-01
Chr07	irgsp1_rep	three_prime_UTR	1233033	1233111	.	+	.	Parent=Os07t0123601-01
Chr07	irgsp1_rep	three_prime_UTR	1233429	1233517	.	+	.	Parent=Os07t0123601-01
Chr07	irgsp1_rep	three_prime_UTR	1233906	1233967	.	+	.	Parent=Os07t0123601-01
Chr07	irgsp1_rep	three_prime_UTR	1234238	1234427	.	+	.	Parent=Os07t0123601-01
Chr07	irgsp1_rep	three_prime_UTR	1234929	1235068	.	+	.	Parent=Os07t0123601-01
Chr07	irgsp1_rep	three_prime_UTR	1235331	1235391	.	+	.	Parent=Os07t0123601-01
Chr07	irgsp1_rep	three_prime_UTR	1235742	1235810	.	+	.	Parent=Os07t0123601-01
Chr07	irgsp1_rep	three_prime_UTR	1236258	1236361	.	+	.	Parent=Os07t0123601-01
Chr07	irgsp1_rep	three_prime_UTR	1236813	1237147	.	+	.	Parent=Os07t0123601-01
Chr07	irgsp1_rep	three_prime_UTR	1238086	1238226	.	+	.	Parent=Os07t0123601-01
Chr07	irgsp1_rep	mRNA	1228856	1238253	.	-	.	ID=Os07t0123700-00;Name=Os07t0123700-00;Locus_id=Os07g0123700;Oryzabase Gene Symbol Synonym(s)=OsWD40-136;Note=PUL domain containing protein.;Transcript_evidence=AK252328 (DDBJ);ORF_evidence=XP_002883155.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),PUL (IPR013535),PLAA family ubiquitin binding%2C PFU (IPR015155),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);Oryzabase=10817;TENOR=Os07t0123700-00;KEGG=Os07t0123700-00
Chr07	irgsp1_rep	CDS	1238086	1238253	.	-	0	Parent=Os07t0123700-00
Chr07	irgsp1_rep	CDS	1236813	1237147	.	-	0	Parent=Os07t0123700-00
Chr07	irgsp1_rep	CDS	1236258	1236361	.	-	1	Parent=Os07t0123700-00
Chr07	irgsp1_rep	CDS	1235742	1235810	.	-	2	Parent=Os07t0123700-00
Chr07	irgsp1_rep	CDS	1235331	1235391	.	-	2	Parent=Os07t0123700-00
Chr07	irgsp1_rep	CDS	1234929	1235068	.	-	1	Parent=Os07t0123700-00
Chr07	irgsp1_rep	CDS	1234238	1234427	.	-	2	Parent=Os07t0123700-00
Chr07	irgsp1_rep	CDS	1233906	1233967	.	-	1	Parent=Os07t0123700-00
Chr07	irgsp1_rep	CDS	1233429	1233517	.	-	2	Parent=Os07t0123700-00
Chr07	irgsp1_rep	CDS	1233033	1233111	.	-	0	Parent=Os07t0123700-00
Chr07	irgsp1_rep	CDS	1232899	1232958	.	-	2	Parent=Os07t0123700-00
Chr07	irgsp1_rep	CDS	1232553	1232699	.	-	2	Parent=Os07t0123700-00
Chr07	irgsp1_rep	CDS	1232422	1232464	.	-	2	Parent=Os07t0123700-00
Chr07	irgsp1_rep	CDS	1232239	1232272	.	-	1	Parent=Os07t0123700-00
Chr07	irgsp1_rep	CDS	1231870	1231956	.	-	0	Parent=Os07t0123700-00
Chr07	irgsp1_rep	CDS	1231351	1231516	.	-	0	Parent=Os07t0123700-00
Chr07	irgsp1_rep	CDS	1230558	1230635	.	-	2	Parent=Os07t0123700-00
Chr07	irgsp1_rep	CDS	1230215	1230351	.	-	2	Parent=Os07t0123700-00
Chr07	irgsp1_rep	CDS	1229877	1229953	.	-	0	Parent=Os07t0123700-00
Chr07	irgsp1_rep	CDS	1229519	1229588	.	-	1	Parent=Os07t0123700-00
Chr07	irgsp1_rep	CDS	1229358	1229423	.	-	0	Parent=Os07t0123700-00
Chr07	irgsp1_rep	CDS	1228871	1228999	.	-	0	Parent=Os07t0123700-00
Chr07	irgsp1_rep	three_prime_UTR	1228856	1228870	.	-	.	Parent=Os07t0123700-00
Chr07	irgsp1_rep	mRNA	1239804	1240626	.	-	.	ID=Os07t0123800-01;Name=Os07t0123800-01;Locus_id=Os07g0123800;Note=Uncharacterised conserved protein UCP031279 domain containing protein.;Transcript_evidence=AK109248 (DDBJ%2C Best hit);ORF_evidence=B9FVA7 (UniProt);InterPro=Uncharacterised conserved protein UCP031279 (IPR016972);NIAS_FLcDNA=002-156-H03;Expression=AK109248;TENOR=Os07t0123800-01;KEGG=Os07t0123800-01
Chr07	irgsp1_rep	five_prime_UTR	1240525	1240626	.	-	.	Parent=Os07t0123800-01
Chr07	irgsp1_rep	CDS	1240039	1240524	.	-	0	Parent=Os07t0123800-01
Chr07	irgsp1_rep	three_prime_UTR	1239804	1240038	.	-	.	Parent=Os07t0123800-01
Chr07	irgsp1_rep	mRNA	1245458	1246177	.	-	.	ID=Os07t0123900-01;Name=Os07t0123900-01;Locus_id=Os07g0123900;Note=Similar to cold shock protein-1.;Transcript_evidence=AK121537 (DDBJ%2C Best hit);ORF_evidence=NP_001149736.1 (RefSeq);NIAS_FLcDNA=J033031F04;Expression=AK121537;TENOR=Os07t0123900-01;KEGG=Os07t0123900-01
Chr07	irgsp1_rep	five_prime_UTR	1246112	1246177	.	-	.	Parent=Os07t0123900-01
Chr07	irgsp1_rep	CDS	1245704	1246111	.	-	0	Parent=Os07t0123900-01
Chr07	irgsp1_rep	three_prime_UTR	1245458	1245703	.	-	.	Parent=Os07t0123900-01
Chr07	irgsp1_rep	mRNA	1248874	1250251	.	+	.	ID=Os07t0124000-01;Name=Os07t0124000-01;Locus_id=Os07g0124000;Note=Similar to CF9.;Transcript_evidence=AK287703 (DDBJ%2C Best hit);ORF_evidence=NP_001149709.1 (RefSeq);NIAS_FLcDNA=J065131J11;TENOR=Os07t0124000-01;KEGG=Os07t0124000-01
Chr07	irgsp1_rep	CDS	1248874	1250067	.	+	0	Parent=Os07t0124000-01
Chr07	irgsp1_rep	three_prime_UTR	1250068	1250251	.	+	.	Parent=Os07t0124000-01
Chr07	irgsp1_rep	mRNA	1255047	1255744	.	-	.	ID=Os07t0124100-01;Name=Os07t0124100-01;Locus_id=Os07g0124100;CGSNL Gene Symbol=PSK4;CGSNL Gene Name=PHYTOSULFOKINE 4;Oryzabase Gene Symbol Synonym(s)=OsPSK4%2C Psk4;Oryzabase Gene Name Synonym(s)=phytosulfokine 4;Note=Similar to Phytosulfokines 4 precursor.;Transcript_evidence=AK063647 (DDBJ%2C Best hit);ORF_evidence=Q9AR88 (UniProt);GO=Biological Process: cell proliferation (GO:0008283),Cellular Component: extracellular region (GO:0005576),Molecular Function: growth factor activity (GO:0008083);InterPro=Phytosulfokine (IPR009438);NIAS_FLcDNA=001-118-H12;Oryzabase=14420;Expression=AK063647;TENOR=Os07t0124100-01;KEGG=Os07t0124100-01
Chr07	irgsp1_rep	five_prime_UTR	1255669	1255744	.	-	.	Parent=Os07t0124100-01
Chr07	irgsp1_rep	CDS	1255552	1255668	.	-	0	Parent=Os07t0124100-01
Chr07	irgsp1_rep	CDS	1255307	1255441	.	-	0	Parent=Os07t0124100-01
Chr07	irgsp1_rep	three_prime_UTR	1255047	1255306	.	-	.	Parent=Os07t0124100-01
Chr07	irgsp1_rep	mRNA	1267873	1268776	.	+	.	ID=Os07t0124300-00;Name=Os07t0124300-00;Locus_id=Os07g0124300;CGSNL Gene Symbol=BZIP57;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 57;Oryzabase Gene Symbol Synonym(s)=OsbZIP57;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 57;Note=Similar to bZIP transcription factor family protein.;Transcript_evidence=CU406121 (DDBJ%2C Best hit);ORF_evidence=Q7XIZ3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);Oryzabase=10140;TENOR=Os07t0124300-00;KEGG=Os07t0124300-00
Chr07	irgsp1_rep	five_prime_UTR	1267873	1267953	.	+	.	Parent=Os07t0124300-00
Chr07	irgsp1_rep	CDS	1267954	1268550	.	+	0	Parent=Os07t0124300-00
Chr07	irgsp1_rep	three_prime_UTR	1268551	1268776	.	+	.	Parent=Os07t0124300-00
Chr07	irgsp1_rep	mRNA	1269041	1269855	.	+	.	ID=Os07t0124400-01;Name=Os07t0124400-01;Locus_id=Os07g0124400;Note=Hypothetical conserved gene.;Transcript_evidence=AK111259 (DDBJ%2C Best hit);ORF_evidence=B9FVA8 (UniProt);NIAS_FLcDNA=002-180-E11;Expression=AK111259;TENOR=Os07t0124400-01;KEGG=Os07t0124400-01
Chr07	irgsp1_rep	five_prime_UTR	1269041	1269109	.	+	.	Parent=Os07t0124400-01
Chr07	irgsp1_rep	CDS	1269110	1269379	.	+	0	Parent=Os07t0124400-01
Chr07	irgsp1_rep	three_prime_UTR	1269380	1269855	.	+	.	Parent=Os07t0124400-01
Chr07	irgsp1_rep	mRNA	1274555	1278717	.	+	.	ID=Os07t0124500-01;Name=Os07t0124500-01;Locus_id=Os07g0124500;Oryzabase Gene Symbol Synonym(s)=eIF-3c%2C OseIF3c%2C EIF3C;Oryzabase Gene Name Synonym(s)="eukaryotic translation initiation factor 3%2C subunit c"%2C EUKARYOTIC INITIATION FACTOR 3C;Note=Similar to Eukaryotic translation initiation factor 3 subunit 8 (eIF3 p110) (eIF3c).;Transcript_evidence=AK070529 (DDBJ%2C Best hit),AK101000 (DDBJ%2C Best hit);ORF_evidence=Q1SL20 (UniProt);GO=Biological Process: translational initiation (GO:0006413),Cellular Component: eukaryotic translation initiation factor 3 complex (GO:0005852),Molecular Function: translation initiation factor activity (GO:0003743),Molecular Function: protein binding (GO:0005515);InterPro=Proteasome component (PCI) domain (IPR000717),Eukaryotic translation initiation factor 3 subunit 8%2C N-terminal (IPR008905),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=J023060K11,J023147D18;Oryzabase=21024;TENOR=Os07t0124500-01
Chr07	irgsp1_rep	five_prime_UTR	1274555	1274676	.	+	.	Parent=Os07t0124500-01
Chr07	irgsp1_rep	five_prime_UTR	1275137	1275176	.	+	.	Parent=Os07t0124500-01
Chr07	irgsp1_rep	CDS	1275177	1275200	.	+	0	Parent=Os07t0124500-01
Chr07	irgsp1_rep	CDS	1275335	1277161	.	+	0	Parent=Os07t0124500-01
Chr07	irgsp1_rep	CDS	1277519	1278478	.	+	0	Parent=Os07t0124500-01
Chr07	irgsp1_rep	three_prime_UTR	1278479	1278717	.	+	.	Parent=Os07t0124500-01
Chr07	irgsp1_rep	mRNA	1281407	1285040	.	+	.	ID=Os07t0124600-01;Name=Os07t0124600-01;Locus_id=Os07g0124600;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK073437 (DDBJ%2C Best hit);ORF_evidence=A2YHR7 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033042K24;Oryzabase=20198;Expression=AK073437;TENOR=Os07t0124600-01;KEGG=Os07t0124600-01
Chr07	irgsp1_rep	five_prime_UTR	1281407	1281478	.	+	.	Parent=Os07t0124600-01
Chr07	irgsp1_rep	CDS	1281479	1281754	.	+	0	Parent=Os07t0124600-01
Chr07	irgsp1_rep	CDS	1282232	1283089	.	+	0	Parent=Os07t0124600-01
Chr07	irgsp1_rep	three_prime_UTR	1283090	1283096	.	+	.	Parent=Os07t0124600-01
Chr07	irgsp1_rep	three_prime_UTR	1284802	1285040	.	+	.	Parent=Os07t0124600-01
Chr07	irgsp1_rep	mRNA	1298865	1299428	.	-	.	ID=Os07t0124650-00;Name=Os07t0124650-00;Locus_id=Os07g0124650;Note=Hypothetical gene.;Transcript_evidence=EU942577 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0124650-00;KEGG=Os07t0124650-00
Chr07	irgsp1_rep	CDS	1298892	1299428	.	-	0	Parent=Os07t0124650-00
Chr07	irgsp1_rep	three_prime_UTR	1298865	1298891	.	-	.	Parent=Os07t0124650-00
Chr07	irgsp1_rep	mRNA	1299598	1304299	.	+	.	ID=Os07t0124700-01;Name=Os07t0124700-01;Locus_id=Os07g0124700;CGSNL Gene Symbol=PLT8;CGSNL Gene Name=PLETHORA 8;Oryzabase Gene Symbol Synonym(s)=OsPLT8%2C CRL5%2C OsCRL5%2C AP2/EREBP141%2C AP2/EREBP#141;Oryzabase Gene Name Synonym(s)=Plethora 8%2C CROWN ROOTLESS5%2C APETALA2/ethylene-responsive element binding protein 141;Note=Similar to PLETHORA1.;Transcript_evidence=AK109848 (DDBJ%2C Best hit);ORF_evidence=Q84Z02 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=002-148-F05;Manual Curation=October 24%2C 2019;Oryzabase=10471;Expression=AK109848;TENOR=Os07t0124700-01;KEGG=Os07t0124700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	1299598	1299630	.	+	.	Parent=Os07t0124700-01
Chr07	irgsp1_rep	five_prime_UTR	1299781	1299789	.	+	.	Parent=Os07t0124700-01
Chr07	irgsp1_rep	five_prime_UTR	1299901	1299911	.	+	.	Parent=Os07t0124700-01
Chr07	irgsp1_rep	CDS	1299912	1299989	.	+	0	Parent=Os07t0124700-01
Chr07	irgsp1_rep	CDS	1300091	1300164	.	+	0	Parent=Os07t0124700-01
Chr07	irgsp1_rep	CDS	1301196	1301246	.	+	1	Parent=Os07t0124700-01
Chr07	irgsp1_rep	CDS	1301439	1301515	.	+	1	Parent=Os07t0124700-01
Chr07	irgsp1_rep	CDS	1303199	1303863	.	+	2	Parent=Os07t0124700-01
Chr07	irgsp1_rep	three_prime_UTR	1303864	1304299	.	+	.	Parent=Os07t0124700-01
Chr07	irgsp1_rep	mRNA	1298445	1303863	.	+	.	ID=Os07t0124700-02;Name=Os07t0124700-02;Locus_id=Os07g0124700;RAP-DB Gene Symbol Synonym(s)=CRL5;RAP-DB Gene Name Synonym(s)=CROWN ROOTLESS5;CGSNL Gene Symbol=PLT8;CGSNL Gene Name=PLETHORA 8;Oryzabase Gene Symbol Synonym(s)=OsPLT8%2C CRL5%2C OsCRL5%2C AP2/EREBP141%2C AP2/EREBP#141;Oryzabase Gene Name Synonym(s)=Plethora 8%2C CROWN ROOTLESS5%2C APETALA2/ethylene-responsive element binding protein 141;Note=AP2/ERF transcription factor%2C Regulation of crown root initiation;Transcript_evidence=Inferred from literature;ORF_evidence=Q84Z02;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-binding transcription factor activity (GO:0003700);InterPro=DNA-binding domain superfamily (IPR016177),AP2/ERF domain superfamily (IPR036955),AP2/ERF domain (IPR001471);Manual Curation=October 24%2C 2019;Literature_PMID=21481033;Oryzabase=10471
Chr07	irgsp1_rep	CDS	1298445	1298796	.	+	0	Parent=Os07t0124700-02
Chr07	irgsp1_rep	CDS	1298896	1299424	.	+	2	Parent=Os07t0124700-02
Chr07	irgsp1_rep	CDS	1299548	1299630	.	+	1	Parent=Os07t0124700-02
Chr07	irgsp1_rep	CDS	1299901	1299989	.	+	2	Parent=Os07t0124700-02
Chr07	irgsp1_rep	CDS	1300091	1300164	.	+	0	Parent=Os07t0124700-02
Chr07	irgsp1_rep	CDS	1301196	1301246	.	+	1	Parent=Os07t0124700-02
Chr07	irgsp1_rep	CDS	1301439	1301515	.	+	1	Parent=Os07t0124700-02
Chr07	irgsp1_rep	CDS	1303199	1303863	.	+	2	Parent=Os07t0124700-02
Chr07	irgsp1_rep	mRNA	1303190	1303790	.	-	.	ID=Os07t0124725-00;Name=Os07t0124725-00;Locus_id=Os07g0124725;Note=Hypothetical protein.;Transcript_evidence=EU949353 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0124725-00
Chr07	irgsp1_rep	five_prime_UTR	1303789	1303790	.	-	.	Parent=Os07t0124725-00
Chr07	irgsp1_rep	CDS	1303190	1303788	.	-	0	Parent=Os07t0124725-00
Chr07	irgsp1_rep	mRNA	1305328	1308048	.	-	.	ID=Os07t0124750-00;Name=Os07t0124750-00;Locus_id=Os07g0124750;CGSNL Gene Symbol=CSLC10;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE C10;Oryzabase Gene Symbol Synonym(s)=OsCslC10%2C OsCSLC10;Note=Similar to cDNA clone:J033097L05%2C full insert sequence.;Transcript_evidence=AK358114 (DDBJ);ORF_evidence=B7F7S0 (UniProt);InterPro=Glycosyl transferase%2C family 2 (IPR001173);Oryzabase=18107;TENOR=Os07t0124750-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	1306930	1308048	.	-	0	Parent=Os07t0124750-00
Chr07	irgsp1_rep	CDS	1306549	1306839	.	-	0	Parent=Os07t0124750-00
Chr07	irgsp1_rep	CDS	1306328	1306441	.	-	0	Parent=Os07t0124750-00
Chr07	irgsp1_rep	CDS	1305328	1305951	.	-	0	Parent=Os07t0124750-00
Chr07	irgsp1_rep	mRNA	1313767	1316444	.	-	.	ID=Os07t0124800-01;Name=Os07t0124800-01;Locus_id=Os07g0124800;Oryzabase Gene Symbol Synonym(s)=OsDjC57;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C57;Note=Similar to Chaperone protein dnaJ.;Transcript_evidence=AK068837 (DDBJ%2C Best hit);ORF_evidence=B6U0R7 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095);NIAS_FLcDNA=J013159A01;Oryzabase=12214;Expression=AK068837;TENOR=Os07t0124800-01;KEGG=Os07t0124800-01
Chr07	irgsp1_rep	five_prime_UTR	1316368	1316444	.	-	.	Parent=Os07t0124800-01
Chr07	irgsp1_rep	CDS	1316227	1316367	.	-	0	Parent=Os07t0124800-01
Chr07	irgsp1_rep	CDS	1316009	1316050	.	-	0	Parent=Os07t0124800-01
Chr07	irgsp1_rep	CDS	1315774	1315899	.	-	0	Parent=Os07t0124800-01
Chr07	irgsp1_rep	CDS	1315150	1315379	.	-	0	Parent=Os07t0124800-01
Chr07	irgsp1_rep	CDS	1314674	1314710	.	-	1	Parent=Os07t0124800-01
Chr07	irgsp1_rep	CDS	1314193	1314250	.	-	0	Parent=Os07t0124800-01
Chr07	irgsp1_rep	CDS	1314028	1314107	.	-	2	Parent=Os07t0124800-01
Chr07	irgsp1_rep	three_prime_UTR	1313767	1314027	.	-	.	Parent=Os07t0124800-01
Chr07	irgsp1_rep	mRNA	1319034	1319789	.	+	.	ID=Os07t0124900-01;Name=Os07t0124900-01;Locus_id=Os07g0124900;CGSNL Gene Symbol=PR1-71;CGSNL Gene Name=PATHOGENESIS-RELATED GENE 1-71;Oryzabase Gene Symbol Synonym(s)=OsPR1#071%2C OsPR1-71;Oryzabase Gene Name Synonym(s)=pathogenesis-related protein 1-71%2C PR protein 1-71;Note=Allergen V5/Tpx-1 related family protein.;Transcript_evidence=AK060057 (DDBJ%2C Best hit);ORF_evidence=D5KR57 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Allergen V5/Tpx-1-related (IPR001283),CAP domain (IPR014044),Allergen V5/Tpx-1-related%2C conserved site (IPR018244);NIAS_FLcDNA=006-305-E12;Oryzabase=13353;Expression=AK060057;TENOR=Os07t0124900-01;KEGG=Os07t0124900-01
Chr07	irgsp1_rep	five_prime_UTR	1319034	1319107	.	+	.	Parent=Os07t0124900-01
Chr07	irgsp1_rep	CDS	1319108	1319647	.	+	0	Parent=Os07t0124900-01
Chr07	irgsp1_rep	three_prime_UTR	1319648	1319789	.	+	.	Parent=Os07t0124900-01
Chr07	irgsp1_rep	mRNA	1322193	1323127	.	-	.	ID=Os07t0125000-02;Name=Os07t0125000-02;Locus_id=Os07g0125000;Oryzabase Gene Symbol Synonym(s)=OsPR1b%2C PR1b;Oryzabase Gene Name Synonym(s)=pathogenesis-related gene 1b;Note=Allergen V5/Tpx-1 related family protein.;Transcript_evidence=AK060005 (DDBJ%2C Best hit),AK104140 (DDBJ%2C Best hit);ORF_evidence=Q8LLU7 (UniProt);NIAS_FLcDNA=006-302-B02,006-205-C11;Oryzabase=18482;Expression=AK060005;TENOR=Os07t0125000-02;KEGG=Os07t0125000-02
Chr07	irgsp1_rep	five_prime_UTR	1323035	1323127	.	-	.	Parent=Os07t0125000-02
Chr07	irgsp1_rep	CDS	1322525	1323034	.	-	0	Parent=Os07t0125000-02
Chr07	irgsp1_rep	three_prime_UTR	1322193	1322524	.	-	.	Parent=Os07t0125000-02
Chr07	irgsp1_rep	mRNA	1335405	1336081	.	+	.	ID=Os07t0125201-00;Name=Os07t0125201-00;Locus_id=Os07g0125201;Oryzabase Gene Symbol Synonym(s)=PR1;Oryzabase Gene Name Synonym(s)=Pathogen response gene 1;Note=Allergen V5/Tpx-1 related family protein.;Transcript_evidence=DQ167191 (DDBJ);ORF_evidence=O04000 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Allergen V5/Tpx-1-related (IPR001283),CAP domain (IPR014044),Allergen V5/Tpx-1-related%2C conserved site (IPR018244);Oryzabase=22975;TENOR=Os07t0125201-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	1335405	1335923	.	+	0	Parent=Os07t0125201-00
Chr07	irgsp1_rep	three_prime_UTR	1335924	1336081	.	+	.	Parent=Os07t0125201-00
Chr07	irgsp1_rep	mRNA	1352187	1352942	.	+	.	ID=Os07t0125500-01;Name=Os07t0125500-01;Locus_id=Os07g0125500;Note=Allergen V5/Tpx-1 related family protein.;Transcript_evidence=AK060057 (DDBJ%2C Best hit);ORF_evidence=D5KR57 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Allergen V5/Tpx-1-related (IPR001283),CAP domain (IPR014044),Allergen V5/Tpx-1-related%2C conserved site (IPR018244);NIAS_FLcDNA=006-305-E12;Expression=AK060057;TENOR=Os07t0125500-01;KEGG=Os07t0125500-01
Chr07	irgsp1_rep	five_prime_UTR	1352187	1352260	.	+	.	Parent=Os07t0125500-01
Chr07	irgsp1_rep	CDS	1352261	1352800	.	+	0	Parent=Os07t0125500-01
Chr07	irgsp1_rep	three_prime_UTR	1352801	1352942	.	+	.	Parent=Os07t0125500-01
Chr07	irgsp1_rep	mRNA	1355346	1356280	.	-	.	ID=Os07t0125600-02;Name=Os07t0125600-02;Locus_id=Os07g0125600;Note=Allergen V5/Tpx-1 related family protein.;Transcript_evidence=AK060005 (DDBJ%2C Best hit),AK104140 (DDBJ%2C Best hit);ORF_evidence=Q8LLU7 (UniProt);NIAS_FLcDNA=006-302-B02,006-205-C11;Expression=AK060005;TENOR=Os07t0125600-02;KEGG=Os07t0125600-02
Chr07	irgsp1_rep	five_prime_UTR	1356188	1356280	.	-	.	Parent=Os07t0125600-02
Chr07	irgsp1_rep	CDS	1355678	1356187	.	-	0	Parent=Os07t0125600-02
Chr07	irgsp1_rep	three_prime_UTR	1355346	1355677	.	-	.	Parent=Os07t0125600-02
Chr07	irgsp1_rep	mRNA	1368558	1369234	.	+	.	ID=Os07t0126100-00;Name=Os07t0126100-00;Locus_id=Os07g0126100;Note=Allergen V5/Tpx-1 related family protein.;Transcript_evidence=DQ167191 (DDBJ);ORF_evidence=O04000 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Allergen V5/Tpx-1-related (IPR001283),CAP domain (IPR014044),Allergen V5/Tpx-1-related%2C conserved site (IPR018244);TENOR=Os07t0126100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	1368558	1369076	.	+	0	Parent=Os07t0126100-00
Chr07	irgsp1_rep	three_prime_UTR	1369077	1369234	.	+	.	Parent=Os07t0126100-00
Chr07	irgsp1_rep	mRNA	1385340	1386095	.	+	.	ID=Os07t0126301-01;Name=Os07t0126301-01;Locus_id=Os07g0126301;Note=Allergen V5/Tpx-1 related family protein.;Transcript_evidence=AK060057 (DDBJ%2C Best hit);ORF_evidence=D5KR57 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Allergen V5/Tpx-1-related (IPR001283),CAP domain (IPR014044),Allergen V5/Tpx-1-related%2C conserved site (IPR018244);NIAS_FLcDNA=006-305-E12;Expression=AK060057;TENOR=Os07t0126301-01;KEGG=Os07t0126301-01
Chr07	irgsp1_rep	five_prime_UTR	1385340	1385413	.	+	.	Parent=Os07t0126301-01
Chr07	irgsp1_rep	CDS	1385414	1385953	.	+	0	Parent=Os07t0126301-01
Chr07	irgsp1_rep	three_prime_UTR	1385954	1386095	.	+	.	Parent=Os07t0126301-01
Chr07	irgsp1_rep	mRNA	1388499	1389433	.	-	.	ID=Os07t0126401-02;Name=Os07t0126401-02;Locus_id=Os07g0126401;Note=Allergen V5/Tpx-1 related family protein.;Transcript_evidence=AK060005 (DDBJ%2C Best hit),AK104140 (DDBJ%2C Best hit);ORF_evidence=Q8LLU7 (UniProt);NIAS_FLcDNA=006-302-B02,006-205-C11;Expression=AK060005;TENOR=Os07t0126401-02;KEGG=Os07t0126401-02
Chr07	irgsp1_rep	five_prime_UTR	1389341	1389433	.	-	.	Parent=Os07t0126401-02
Chr07	irgsp1_rep	CDS	1388831	1389340	.	-	0	Parent=Os07t0126401-02
Chr07	irgsp1_rep	three_prime_UTR	1388499	1388830	.	-	.	Parent=Os07t0126401-02
Chr07	irgsp1_rep	mRNA	1401708	1402384	.	+	.	ID=Os07t0126500-00;Name=Os07t0126500-00;Locus_id=Os07g0126500;Note=Allergen V5/Tpx-1 related family protein.;Transcript_evidence=DQ167191 (DDBJ);ORF_evidence=O04000 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Allergen V5/Tpx-1-related (IPR001283),CAP domain (IPR014044),Allergen V5/Tpx-1-related%2C conserved site (IPR018244);TENOR=Os07t0126500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	1401708	1402226	.	+	0	Parent=Os07t0126500-00
Chr07	irgsp1_rep	three_prime_UTR	1402227	1402384	.	+	.	Parent=Os07t0126500-00
Chr07	irgsp1_rep	mRNA	1432684	1433404	.	+	.	ID=Os07t0127500-01;Name=Os07t0127500-01;Locus_id=Os07g0127500;CGSNL Gene Symbol=PR1-72;CGSNL Gene Name=PATHOGENESIS-RELATED GENE 1-72;Oryzabase Gene Symbol Synonym(s)=OsPR1#072%2C OsPR1-72%2C PR1L%2C OsPR1L;Oryzabase Gene Name Synonym(s)=pathogenesis-related protein 1-72%2C PR protein 1-72%2C PR1-like;Note=Similar to PR-1a pathogenesis related protein (Hv-1a) precursor.;Transcript_evidence=AK062949 (DDBJ%2C Best hit);ORF_evidence=C3UZE5 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Allergen V5/Tpx-1-related (IPR001283),CAP domain (IPR014044),Allergen V5/Tpx-1-related%2C conserved site (IPR018244);NIAS_FLcDNA=001-109-C06;Oryzabase=13354;Expression=AK062949;TENOR=Os07t0127500-01;KEGG=Os07t0127500-01
Chr07	irgsp1_rep	five_prime_UTR	1432684	1432753	.	+	.	Parent=Os07t0127500-01
Chr07	irgsp1_rep	CDS	1432754	1433272	.	+	0	Parent=Os07t0127500-01
Chr07	irgsp1_rep	three_prime_UTR	1433273	1433404	.	+	.	Parent=Os07t0127500-01
Chr07	irgsp1_rep	mRNA	1437292	1438147	.	+	.	ID=Os07t0127600-01;Name=Os07t0127600-01;Locus_id=Os07g0127600;CGSNL Gene Symbol=PR1-73;CGSNL Gene Name=PATHOGENESIS-RELATED GENE 1-73;Oryzabase Gene Symbol Synonym(s)=OsPR1#073%2C OsPR1-73;Oryzabase Gene Name Synonym(s)=pathogenesis-related protein 1-73%2C PR protein 1-73;Note=Allergen V5/Tpx-1 related family protein.;Transcript_evidence=AK063248 (DDBJ%2C Best hit);ORF_evidence=Q8LLU7 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Allergen V5/Tpx-1-related (IPR001283),Ves allergen (IPR002413),CAP domain (IPR014044),Allergen V5/Tpx-1-related%2C conserved site (IPR018244);NIAS_FLcDNA=001-112-H01;Oryzabase=13355;Expression=AK063248;TENOR=Os07t0127600-01;KEGG=Os07t0127600-01
Chr07	irgsp1_rep	five_prime_UTR	1437292	1437384	.	+	.	Parent=Os07t0127600-01
Chr07	irgsp1_rep	CDS	1437385	1437894	.	+	0	Parent=Os07t0127600-01
Chr07	irgsp1_rep	three_prime_UTR	1437895	1438147	.	+	.	Parent=Os07t0127600-01
Chr07	irgsp1_rep	mRNA	1444739	1445064	.	+	.	ID=Os07t0127700-01;Name=Os07t0127700-01;Locus_id=Os07g0127700;Oryzabase Gene Symbol Synonym(s)=PR1b;Oryzabase Gene Name Synonym(s)=pathogenesis-related protein;Note=Similar to Pathogenesis-related protein class 1.;Transcript_evidence=AK243400 (DDBJ%2C Best hit);ORF_evidence=Q9FE57 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Allergen V5/Tpx-1-related (IPR001283),CAP domain (IPR014044),Allergen V5/Tpx-1-related%2C conserved site (IPR018244);NIAS_FLcDNA=J100064K17;Oryzabase=19099;TENOR=Os07t0127700-01;KEGG=Os07t0127700-01
Chr07	irgsp1_rep	five_prime_UTR	1444739	1444740	.	+	.	Parent=Os07t0127700-01
Chr07	irgsp1_rep	CDS	1444741	1444896	.	+	0	Parent=Os07t0127700-01
Chr07	irgsp1_rep	three_prime_UTR	1444897	1445064	.	+	.	Parent=Os07t0127700-01
Chr07	irgsp1_rep	mRNA	1451917	1452565	.	+	.	ID=Os07t0127900-00;Name=Os07t0127900-00;Locus_id=Os07g0127900;Note=Similar to Pathogenisis-related protein 1.2.;Transcript_evidence=BT041183 (DDBJ);ORF_evidence=O82715 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Allergen V5/Tpx-1-related (IPR001283),CAP domain (IPR014044),Allergen V5/Tpx-1-related%2C conserved site (IPR018244);TENOR=Os07t0127900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	1451917	1452432	.	+	0	Parent=Os07t0127900-00
Chr07	irgsp1_rep	three_prime_UTR	1452433	1452565	.	+	.	Parent=Os07t0127900-00
Chr07	irgsp1_rep	mRNA	1500540	1501058	.	+	.	ID=Os07t0128800-00;Name=Os07t0128800-00;Locus_id=Os07g0128800;Note=Similar to PR1a protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A0N0C1 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Allergen V5/Tpx-1-related (IPR001283),CAP domain (IPR014044),Allergen V5/Tpx-1-related%2C conserved site (IPR018244);Oryzabase=23042;TENOR=Os07t0128800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	1500540	1501058	.	+	0	Parent=Os07t0128800-00
Chr07	irgsp1_rep	mRNA	1507790	1508244	.	+	.	ID=Os07t0129100-00;Name=Os07t0129100-00;Locus_id=Os07g0129100;Note=Conserved hypothetical protein.;Transcript_evidence=DQ245898 (DDBJ);ORF_evidence=NP_001175035.1 (RefSeq);TENOR=Os07t0129100-00
Chr07	irgsp1_rep	five_prime_UTR	1507790	1507980	.	+	.	Parent=Os07t0129100-00
Chr07	irgsp1_rep	CDS	1507981	1508244	.	+	0	Parent=Os07t0129100-00
Chr07	irgsp1_rep	mRNA	1512025	1512958	.	+	.	ID=Os07t0129200-01;Name=Os07t0129200-01;Locus_id=Os07g0129200;RAP-DB Gene Symbol Synonym(s)=PR1A%2C OsPR1a%2C OsPR-1a%2C PR1a%2C OsPR1#074%2C OsPR1-74%2C PR-1a%2C OsSCP%2C SCP;RAP-DB Gene Name Synonym(s)=PATHOGENESIS-RELATED GENE 1A%2C pathogenesis-related gene 1a%2C acidic PR protein 1%2C PR protein 1%2C acidic pathogenesis-related protein 1%2C pathogenesis-related 1a protein%2C Sperm Coating Protein;CGSNL Gene Symbol=PR1A;CGSNL Gene Name=PATHOGENESIS-RELATED GENE 1A;Oryzabase Gene Symbol Synonym(s)=OsPR1a%2C OsPR-1a%2C PR1a%2C OsPR1#074%2C OsPR1-74%2C PR-1a%2C OsSCP%2C SCP%2C OsPR1;Oryzabase Gene Name Synonym(s)=pathogenesis-related gene 1a%2C acidic PR protein 1%2C PR protein 1%2C acidic pathogenesis-related protein 1%2C pathogenesis-related 1a protein%2C Sperm Coating Protein;Note=Pathogenesis-related 1a protein%2C Regulation of abiotic stress responses;Transcript_evidence=Inferred from literature;ORF_evidence=Q6YSF8;GO=Cellular Component: extracellular region (GO:0005576);InterPro=Cysteine-rich  secretory protein%2C allergen V5/Tpx-1-related (IPR001283),Ves allergen (IPR002413),CAP domain (IPR014044),Allergen V5/Tpx-1-related%2C conserved site (IPR018244);NIAS_FLcDNA=J100089F17 (truncated);Manual Curation=November 25%2C 2016;Literature_PMID=27486471;Oryzabase=6274;TENOR=Os07t0129200-01;KEGG=Os07t0129200-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	1512025	1512138	.	+	.	Parent=Os07t0129200-01
Chr07	irgsp1_rep	CDS	1512139	1512645	.	+	0	Parent=Os07t0129200-01
Chr07	irgsp1_rep	three_prime_UTR	1512646	1512958	.	+	.	Parent=Os07t0129200-01
Chr07	irgsp1_rep	mRNA	1523654	1524512	.	+	.	ID=Os07t0129300-00;Name=Os07t0129300-00;Locus_id=Os07g0129300;Oryzabase Gene Symbol Synonym(s)=OsPR1%2C OsPR1a%2C PR1a%2C PR1;Oryzabase Gene Name Synonym(s)=PATHOGEN RESPONSE GENE 1%2C PATHOGENESIS-RELATED 1a;Note=Similar to PR1a protein.;Transcript_evidence=CT841995 (DDBJ%2C Best hit);ORF_evidence=Q8LLU7 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Allergen V5/Tpx-1-related (IPR001283),Ves allergen (IPR002413),CAP domain (IPR014044),Allergen V5/Tpx-1-related%2C conserved site (IPR018244);Oryzabase=12551;TENOR=Os07t0129300-00;KEGG=Os07t0129300-00
Chr07	irgsp1_rep	five_prime_UTR	1523654	1523741	.	+	.	Parent=Os07t0129300-00
Chr07	irgsp1_rep	CDS	1523742	1524239	.	+	0	Parent=Os07t0129300-00
Chr07	irgsp1_rep	three_prime_UTR	1524240	1524431	.	+	.	Parent=Os07t0129300-00
Chr07	irgsp1_rep	three_prime_UTR	1524440	1524512	.	+	.	Parent=Os07t0129300-00
Chr07	irgsp1_rep	mRNA	1566125	1572085	.	+	.	ID=Os07t0129700-01;Name=Os07t0129700-01;Locus_id=Os07g0129700;RAP-DB Gene Symbol Synonym(s)=OSH15%2C Oskn3;RAP-DB Gene Name Synonym(s)=HOMEOBOX 15%2C Oryza sativa homeobox 15;CGSNL Gene Symbol=OSH15;CGSNL Gene Name=HOMEOBOX 15;Oryzabase Gene Symbol Synonym(s)=OSH15%2C OsH15%2C OSKN3%2C Oskn3%2C HOS3%2C D6%2C d6%2C OSH15/Oskn3%2C HB253%2C H15%2C OsKNOX3%2C KNOX3;Oryzabase Gene Name Synonym(s)=Oryza sativa homeobox15%2C Rice KNOX gene-15%2C Homeobox protein knotted-1-like 12%2C Homeobox protein OSH15%2C Homeobox protein HOS3%2C Homeobox protein knotted-1-like 3%2C KNOX PROTEIN 3%2C Oryza sativa Homeobox 15;Note=KNOTTED-type homeodomain protein%2C KNOX protein%2C Shoot formation during embryogenesis%2C Control of seed shattering%2C Control of internode development%2C Repression of lignin biosynthesis;Transcript_evidence=AK111877,AB016071;ORF_evidence=O80416;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding (GO:0043565),Cellular Component: nucleus (GO:0005634);InterPro=KNOX1 (IPR005540),KNOX2 (IPR005541),ELK domain (IPR005539),Homeobox domain-like (IPR009057),Homeobox domain (IPR001356),Homeobox KN domain (IPR008422),Homeobox%2C conserved site (IPR017970);NIAS_FLcDNA=J033044D23;Manual Curation=May 16%2C 2017;Literature_PMID=28351912,10080693,9869405;Oryzabase=2975;Expression=AK111877;TENOR=Os07t0129700-01;KEGG=Os07t0129700-01
Chr07	irgsp1_rep	five_prime_UTR	1566125	1566253	.	+	.	Parent=Os07t0129700-01
Chr07	irgsp1_rep	CDS	1566254	1566592	.	+	0	Parent=Os07t0129700-01
Chr07	irgsp1_rep	CDS	1566702	1566812	.	+	0	Parent=Os07t0129700-01
Chr07	irgsp1_rep	CDS	1566962	1567118	.	+	0	Parent=Os07t0129700-01
Chr07	irgsp1_rep	CDS	1571215	1571468	.	+	2	Parent=Os07t0129700-01
Chr07	irgsp1_rep	CDS	1571611	1571817	.	+	0	Parent=Os07t0129700-01
Chr07	irgsp1_rep	three_prime_UTR	1571818	1572085	.	+	.	Parent=Os07t0129700-01
Chr07	irgsp1_rep	mRNA	1575296	1579565	.	-	.	ID=Os07t0129800-00;Name=Os07t0129800-00;Locus_id=Os07g0129800;Note=Similar to lectin-like receptor kinase 7.;Transcript_evidence=AK360292 (DDBJ);ORF_evidence=NP_001147473.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os07t0129800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	1578987	1579565	.	-	0	Parent=Os07t0129800-00
Chr07	irgsp1_rep	CDS	1575322	1577286	.	-	0	Parent=Os07t0129800-00
Chr07	irgsp1_rep	three_prime_UTR	1575296	1575321	.	-	.	Parent=Os07t0129800-00
Chr07	irgsp1_rep	mRNA	1583658	1585631	.	-	.	ID=Os07t0129900-00;Name=Os07t0129900-00;Locus_id=Os07g0129900;Note=Similar to lectin-like receptor kinase 7.;Transcript_evidence=tplb0022b01 (Wheat FLcDNA);ORF_evidence=NP_001147990.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os07t0129900-00;KEGG=Os07t0129900-00
Chr07	irgsp1_rep	CDS	1583658	1585631	.	-	0	Parent=Os07t0129900-00
Chr07	irgsp1_rep	mRNA	1588294	1589280	.	+	.	ID=Os07t0130000-00;Name=Os07t0130000-00;Locus_id=Os07g0130000;Note=F-box domain%2C Skp2-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q84ZI5 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);TENOR=Os07t0130000-00
Chr07	irgsp1_rep	CDS	1588294	1589280	.	+	0	Parent=Os07t0130000-00
Chr07	irgsp1_rep	mRNA	1590912	1593270	.	-	.	ID=Os07t0130100-01;Name=Os07t0130100-01;Locus_id=Os07g0130100;Oryzabase Gene Symbol Synonym(s)=RLK;Oryzabase Gene Name Synonym(s)=membrane-anchored receptor-like kinases;Note=Similar to Resistance protein candidate (Fragment).;Transcript_evidence=AK069990 (DDBJ%2C Best hit);ORF_evidence=A2YHU5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Legume lectin%2C beta chain%2C Mn/Ca-binding site (IPR019825);NIAS_FLcDNA=J023039H22;Oryzabase=22538;Expression=AK069990;TENOR=Os07t0130100-01;KEGG=Os07t0130100-01
Chr07	irgsp1_rep	five_prime_UTR	1593268	1593270	.	-	.	Parent=Os07t0130100-01
Chr07	irgsp1_rep	CDS	1591222	1593267	.	-	0	Parent=Os07t0130100-01
Chr07	irgsp1_rep	three_prime_UTR	1590912	1591221	.	-	.	Parent=Os07t0130100-01
Chr07	irgsp1_rep	mRNA	1595360	1597594	.	-	.	ID=Os07t0130200-01;Name=Os07t0130200-01;Locus_id=Os07g0130200;Note=Similar to Resistance protein candidate (Fragment).;Transcript_evidence=AK068307 (DDBJ%2C Best hit);ORF_evidence=NP_001147990.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013136I11;Expression=AK068307;TENOR=Os07t0130200-01;KEGG=Os07t0130200-01
Chr07	irgsp1_rep	five_prime_UTR	1597585	1597594	.	-	.	Parent=Os07t0130200-01
Chr07	irgsp1_rep	CDS	1595518	1597584	.	-	0	Parent=Os07t0130200-01
Chr07	irgsp1_rep	three_prime_UTR	1595360	1595517	.	-	.	Parent=Os07t0130200-01
Chr07	irgsp1_rep	mRNA	1603024	1605316	.	-	.	ID=Os07t0130400-01;Name=Os07t0130400-01;Locus_id=Os07g0130400;Note=Similar to Lectin-like receptor kinase 7%3B2.;Transcript_evidence=AK069319 (DDBJ%2C Best hit);ORF_evidence=NP_001147990.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Legume lectin%2C beta chain%2C Mn/Ca-binding site (IPR019825),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023018L01;Expression=AK069319;TENOR=Os07t0130400-01;KEGG=Os07t0130400-01
Chr07	irgsp1_rep	five_prime_UTR	1605315	1605316	.	-	.	Parent=Os07t0130400-01
Chr07	irgsp1_rep	CDS	1603230	1605314	.	-	0	Parent=Os07t0130400-01
Chr07	irgsp1_rep	three_prime_UTR	1603024	1603229	.	-	.	Parent=Os07t0130400-01
Chr07	irgsp1_rep	mRNA	1603273	1605258	.	+	.	ID=Os07t0130450-00;Name=Os07t0130450-00;Locus_id=Os07g0130450;Note=Hypothetical protein.;Transcript_evidence=EU956864 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0130450-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	1603273	1603363	.	+	.	Parent=Os07t0130450-00
Chr07	irgsp1_rep	five_prime_UTR	1603432	1604243	.	+	.	Parent=Os07t0130450-00
Chr07	irgsp1_rep	CDS	1604244	1604759	.	+	0	Parent=Os07t0130450-00
Chr07	irgsp1_rep	three_prime_UTR	1604760	1605258	.	+	.	Parent=Os07t0130450-00
Chr07	irgsp1_rep	mRNA	1606096	1617544	.	+	.	ID=Os07t0130500-01;Name=Os07t0130500-01;Locus_id=Os07g0130500;Note=Hypothetical protein.;Transcript_evidence=AK066229 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013058J02;TENOR=Os07t0130500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	1606096	1606136	.	+	.	Parent=Os07t0130500-01
Chr07	irgsp1_rep	five_prime_UTR	1606327	1606371	.	+	.	Parent=Os07t0130500-01
Chr07	irgsp1_rep	five_prime_UTR	1609814	1609859	.	+	.	Parent=Os07t0130500-01
Chr07	irgsp1_rep	five_prime_UTR	1612916	1613066	.	+	.	Parent=Os07t0130500-01
Chr07	irgsp1_rep	five_prime_UTR	1613167	1613312	.	+	.	Parent=Os07t0130500-01
Chr07	irgsp1_rep	five_prime_UTR	1613410	1613665	.	+	.	Parent=Os07t0130500-01
Chr07	irgsp1_rep	five_prime_UTR	1613760	1613859	.	+	.	Parent=Os07t0130500-01
Chr07	irgsp1_rep	five_prime_UTR	1613960	1614224	.	+	.	Parent=Os07t0130500-01
Chr07	irgsp1_rep	CDS	1614225	1614451	.	+	0	Parent=Os07t0130500-01
Chr07	irgsp1_rep	CDS	1614536	1614599	.	+	1	Parent=Os07t0130500-01
Chr07	irgsp1_rep	three_prime_UTR	1614600	1614657	.	+	.	Parent=Os07t0130500-01
Chr07	irgsp1_rep	three_prime_UTR	1617407	1617544	.	+	.	Parent=Os07t0130500-01
Chr07	irgsp1_rep	mRNA	1606097	1608996	.	+	.	ID=Os07t0130500-02;Name=Os07t0130500-02;Locus_id=Os07g0130500;Note=Hypothetical gene.;Transcript_evidence=AK066085 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013050A21;Expression=AK066085;TENOR=Os07t0130500-02;KEGG=Os07t0130500-02
Chr07	irgsp1_rep	five_prime_UTR	1606097	1606294	.	+	.	Parent=Os07t0130500-02
Chr07	irgsp1_rep	CDS	1606295	1606371	.	+	0	Parent=Os07t0130500-02
Chr07	irgsp1_rep	CDS	1606913	1607279	.	+	1	Parent=Os07t0130500-02
Chr07	irgsp1_rep	three_prime_UTR	1607280	1608996	.	+	.	Parent=Os07t0130500-02
Chr07	irgsp1_rep	mRNA	1606099	1616122	.	+	.	ID=Os07t0130500-03;Name=Os07t0130500-03;Locus_id=Os07g0130500;Note=Hypothetical protein.;Transcript_evidence=AK068045 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013135M14;TENOR=Os07t0130500-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	1606099	1606371	.	+	.	Parent=Os07t0130500-03
Chr07	irgsp1_rep	five_prime_UTR	1609814	1609859	.	+	.	Parent=Os07t0130500-03
Chr07	irgsp1_rep	five_prime_UTR	1612916	1613066	.	+	.	Parent=Os07t0130500-03
Chr07	irgsp1_rep	five_prime_UTR	1613167	1613312	.	+	.	Parent=Os07t0130500-03
Chr07	irgsp1_rep	five_prime_UTR	1613410	1613665	.	+	.	Parent=Os07t0130500-03
Chr07	irgsp1_rep	five_prime_UTR	1613752	1613859	.	+	.	Parent=Os07t0130500-03
Chr07	irgsp1_rep	five_prime_UTR	1613960	1614124	.	+	.	Parent=Os07t0130500-03
Chr07	irgsp1_rep	five_prime_UTR	1614225	1614451	.	+	.	Parent=Os07t0130500-03
Chr07	irgsp1_rep	five_prime_UTR	1614536	1614657	.	+	.	Parent=Os07t0130500-03
Chr07	irgsp1_rep	five_prime_UTR	1614959	1615432	.	+	.	Parent=Os07t0130500-03
Chr07	irgsp1_rep	CDS	1615433	1615849	.	+	0	Parent=Os07t0130500-03
Chr07	irgsp1_rep	three_prime_UTR	1615850	1616122	.	+	.	Parent=Os07t0130500-03
Chr07	irgsp1_rep	mRNA	1613795	1616066	.	-	.	ID=Os07t0130800-01;Name=Os07t0130800-01;Locus_id=Os07g0130800;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK067638 (DDBJ%2C Best hit),AK066399 (DDBJ%2C Best hit);ORF_evidence=Q84ZH6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013109O13,J013063L14;TENOR=Os07t0130800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	1616066	1616066	.	-	.	Parent=Os07t0130800-01
Chr07	irgsp1_rep	CDS	1613963	1616065	.	-	0	Parent=Os07t0130800-01
Chr07	irgsp1_rep	three_prime_UTR	1613795	1613962	.	-	.	Parent=Os07t0130800-01
Chr07	irgsp1_rep	mRNA	1626738	1628731	.	+	.	ID=Os07t0131001-00;Name=Os07t0131001-00;Locus_id=Os07g0131001;Note=Hypothetical protein.;Transcript_evidence=AK376570 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0131001-00
Chr07	irgsp1_rep	five_prime_UTR	1626738	1627132	.	+	.	Parent=Os07t0131001-00
Chr07	irgsp1_rep	CDS	1627133	1627360	.	+	0	Parent=Os07t0131001-00
Chr07	irgsp1_rep	three_prime_UTR	1627361	1628731	.	+	.	Parent=Os07t0131001-00
Chr07	irgsp1_rep	mRNA	1637689	1638417	.	+	.	ID=Os07t0131250-00;Name=Os07t0131250-00;Locus_id=Os07g0131250;Note=Similar to Hexose transporter HT2.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001148202.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);TENOR=Os07t0131250-00
Chr07	irgsp1_rep	CDS	1637689	1638417	.	+	0	Parent=Os07t0131250-00
Chr07	irgsp1_rep	mRNA	1640079	1643162	.	-	.	ID=Os07t0131375-00;Name=Os07t0131375-00;Locus_id=Os07g0131375;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK360292 (DDBJ);ORF_evidence=GeneMark;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os07t0131375-00
Chr07	irgsp1_rep	CDS	1642275	1643162	.	-	0	Parent=Os07t0131375-00
Chr07	irgsp1_rep	CDS	1640079	1640996	.	-	0	Parent=Os07t0131375-00
Chr07	irgsp1_rep	mRNA	1666092	1668002	.	-	.	ID=Os07t0131500-00;Name=Os07t0131500-00;Locus_id=Os07g0131500;Note=Similar to lectin-like receptor kinase 7.;Transcript_evidence=BT063298 (DDBJ);ORF_evidence=NP_001147473.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os07t0131500-00;KEGG=Os07t0131500-00
Chr07	irgsp1_rep	CDS	1666092	1668002	.	-	0	Parent=Os07t0131500-00
Chr07	irgsp1_rep	mRNA	1669310	1671321	.	+	.	ID=Os07t0131600-01;Name=Os07t0131600-01;Locus_id=Os07g0131600;Note=Similar to Monosaccharide transporter.;Transcript_evidence=AK068296 (DDBJ%2C Best hit);ORF_evidence=E7CWA9 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J013149H14;Expression=AK068296;TENOR=Os07t0131600-01;KEGG=Os07t0131600-01
Chr07	irgsp1_rep	five_prime_UTR	1669310	1669459	.	+	.	Parent=Os07t0131600-01
Chr07	irgsp1_rep	CDS	1669460	1669601	.	+	0	Parent=Os07t0131600-01
Chr07	irgsp1_rep	CDS	1669696	1671128	.	+	2	Parent=Os07t0131600-01
Chr07	irgsp1_rep	three_prime_UTR	1671129	1671321	.	+	.	Parent=Os07t0131600-01
Chr07	irgsp1_rep	mRNA	1669513	1671074	.	-	.	ID=Os07t0131725-00;Name=Os07t0131725-00;Locus_id=Os07g0131725;Note=Hypothetical protein.;Transcript_evidence=tplb0053a05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0131725-00
Chr07	irgsp1_rep	five_prime_UTR	1671045	1671074	.	-	.	Parent=Os07t0131725-00
Chr07	irgsp1_rep	CDS	1670664	1671044	.	-	0	Parent=Os07t0131725-00
Chr07	irgsp1_rep	three_prime_UTR	1669675	1670663	.	-	.	Parent=Os07t0131725-00
Chr07	irgsp1_rep	three_prime_UTR	1669513	1669581	.	-	.	Parent=Os07t0131725-00
Chr07	irgsp1_rep	mRNA	1678147	1681684	.	-	.	ID=Os07t0131850-01;Name=Os07t0131850-01;Locus_id=Os07g0131850;Note=Hypothetical gene.;Transcript_evidence=AK288175 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090004I12;TENOR=Os07t0131850-01;KEGG=Os07t0131850-01
Chr07	irgsp1_rep	five_prime_UTR	1680037	1681684	.	-	.	Parent=Os07t0131850-01
Chr07	irgsp1_rep	CDS	1679641	1680036	.	-	0	Parent=Os07t0131850-01
Chr07	irgsp1_rep	three_prime_UTR	1678147	1679640	.	-	.	Parent=Os07t0131850-01
Chr07	irgsp1_rep	mRNA	1686263	1686574	.	-	.	ID=Os07t0132001-00;Name=Os07t0132001-00;Locus_id=Os07g0132001;Note=Non-protein coding transcript.;Transcript_evidence=FP094256 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0132001-00
Chr07	irgsp1_rep	exon	1686263	1686574	.	-	.	Parent=Os07t0132001-00
Chr07	irgsp1_rep	mRNA	1699795	1701036	.	+	.	ID=Os07t0132300-01;Name=Os07t0132300-01;Locus_id=Os07g0132300;Note=Conserved hypothetical protein.;Transcript_evidence=AK241268 (DDBJ%2C Best hit);ORF_evidence=A2YHW0 (UniProt);NIAS_FLcDNA=J065132F16;TENOR=Os07t0132300-01;KEGG=Os07t0132300-01
Chr07	irgsp1_rep	five_prime_UTR	1699795	1700124	.	+	.	Parent=Os07t0132300-01
Chr07	irgsp1_rep	CDS	1700125	1700227	.	+	0	Parent=Os07t0132300-01
Chr07	irgsp1_rep	CDS	1700316	1700356	.	+	2	Parent=Os07t0132300-01
Chr07	irgsp1_rep	CDS	1700455	1700778	.	+	0	Parent=Os07t0132300-01
Chr07	irgsp1_rep	three_prime_UTR	1700779	1701036	.	+	.	Parent=Os07t0132300-01
Chr07	irgsp1_rep	mRNA	1701299	1701884	.	-	.	ID=Os07t0132400-01;Name=Os07t0132400-01;Locus_id=Os07g0132400;Note=Hypothetical gene.;Transcript_evidence=AK063154 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-111-H10;Expression=AK063154;TENOR=Os07t0132400-01;KEGG=Os07t0132400-01
Chr07	irgsp1_rep	five_prime_UTR	1701816	1701884	.	-	.	Parent=Os07t0132400-01
Chr07	irgsp1_rep	CDS	1701603	1701815	.	-	0	Parent=Os07t0132400-01
Chr07	irgsp1_rep	three_prime_UTR	1701299	1701602	.	-	.	Parent=Os07t0132400-01
Chr07	irgsp1_rep	mRNA	1713426	1714497	.	+	.	ID=Os07t0132500-01;Name=Os07t0132500-01;Locus_id=Os07g0132500;Note=Similar to Resistance protein candidate (Fragment).;Transcript_evidence=AK060877 (DDBJ%2C Best hit);ORF_evidence=Q00RI0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-035-A05;Expression=AK060877;TENOR=Os07t0132500-01;KEGG=Os07t0132500-01
Chr07	irgsp1_rep	five_prime_UTR	1713426	1713427	.	+	.	Parent=Os07t0132500-01
Chr07	irgsp1_rep	CDS	1713428	1714213	.	+	0	Parent=Os07t0132500-01
Chr07	irgsp1_rep	three_prime_UTR	1714214	1714497	.	+	.	Parent=Os07t0132500-01
Chr07	irgsp1_rep	mRNA	1715637	1716780	.	+	.	ID=Os07t0132600-00;Name=Os07t0132600-00;Locus_id=Os07g0132600;Note=Similar to OSIGBa0103O01.10 protein.;Transcript_evidence=EU948516 (DDBJ);ORF_evidence=A0B9Z0 (UniProt);InterPro=Protein of unknown function DUF642 (IPR006946);TENOR=Os07t0132600-00
Chr07	irgsp1_rep	five_prime_UTR	1715637	1715682	.	+	.	Parent=Os07t0132600-00
Chr07	irgsp1_rep	CDS	1715683	1716780	.	+	0	Parent=Os07t0132600-00
Chr07	irgsp1_rep	mRNA	1717343	1718517	.	-	.	ID=Os07t0132700-01;Name=Os07t0132700-01;Locus_id=Os07g0132700;Note=Hypothetical conserved gene.;Transcript_evidence=AK240829 (DDBJ%2C Best hit);ORF_evidence=Q6ZLM2 (UniProt);NIAS_FLcDNA=J065014C09;TENOR=Os07t0132700-01;KEGG=Os07t0132700-01
Chr07	irgsp1_rep	five_prime_UTR	1718383	1718517	.	-	.	Parent=Os07t0132700-01
Chr07	irgsp1_rep	CDS	1718062	1718382	.	-	0	Parent=Os07t0132700-01
Chr07	irgsp1_rep	CDS	1717800	1717982	.	-	0	Parent=Os07t0132700-01
Chr07	irgsp1_rep	three_prime_UTR	1717343	1717799	.	-	.	Parent=Os07t0132700-01
Chr07	irgsp1_rep	mRNA	1722347	1722812	.	-	.	ID=Os07t0132800-01;Name=Os07t0132800-01;Locus_id=Os07g0132800;Note=Hypothetical gene.;Transcript_evidence=AK240792 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065001D11;TENOR=Os07t0132800-01;KEGG=Os07t0132800-01
Chr07	irgsp1_rep	five_prime_UTR	1722811	1722812	.	-	.	Parent=Os07t0132800-01
Chr07	irgsp1_rep	CDS	1722481	1722810	.	-	0	Parent=Os07t0132800-01
Chr07	irgsp1_rep	three_prime_UTR	1722347	1722480	.	-	.	Parent=Os07t0132800-01
Chr07	irgsp1_rep	mRNA	1743475	1745736	.	+	.	ID=Os07t0133000-01;Name=Os07t0133000-01;Locus_id=Os07g0133000;Note=Similar to lectin-like receptor kinase 7.;Transcript_evidence=AK108625 (DDBJ%2C Best hit);ORF_evidence=NP_001147990.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Legume lectin%2C beta chain (IPR001220),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320);NIAS_FLcDNA=002-147-E02;TENOR=Os07t0133000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	1743475	1743551	.	+	.	Parent=Os07t0133000-01
Chr07	irgsp1_rep	CDS	1743552	1744709	.	+	0	Parent=Os07t0133000-01
Chr07	irgsp1_rep	three_prime_UTR	1744710	1745736	.	+	.	Parent=Os07t0133000-01
Chr07	irgsp1_rep	mRNA	1743576	1745612	.	-	.	ID=Os07t0133025-00;Name=Os07t0133025-00;Locus_id=Os07g0133025;Note=Hypothetical protein.;Transcript_evidence=EU956864 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0133025-00
Chr07	irgsp1_rep	five_prime_UTR	1745481	1745612	.	-	.	Parent=Os07t0133025-00
Chr07	irgsp1_rep	five_prime_UTR	1744173	1745420	.	-	.	Parent=Os07t0133025-00
Chr07	irgsp1_rep	CDS	1743579	1744172	.	-	0	Parent=Os07t0133025-00
Chr07	irgsp1_rep	three_prime_UTR	1743576	1743578	.	-	.	Parent=Os07t0133025-00
Chr07	irgsp1_rep	mRNA	1753791	1756075	.	+	.	ID=Os07t0133100-01;Name=Os07t0133100-01;Locus_id=Os07g0133100;Note=Concanavalin A-like lectin/glucanase%2C subgroup domain containing protein.;Transcript_evidence=AK243480 (DDBJ%2C Best hit);ORF_evidence=NP_001175043.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J100072N22;TENOR=Os07t0133100-01;KEGG=Os07t0133100-01
Chr07	irgsp1_rep	five_prime_UTR	1753791	1753856	.	+	.	Parent=Os07t0133100-01
Chr07	irgsp1_rep	CDS	1753857	1755896	.	+	0	Parent=Os07t0133100-01
Chr07	irgsp1_rep	three_prime_UTR	1755897	1756075	.	+	.	Parent=Os07t0133100-01
Chr07	irgsp1_rep	mRNA	1770644	1772559	.	-	.	ID=Os07t0133500-01;Name=Os07t0133500-01;Locus_id=Os07g0133500;Note=Protein of unknown function DUF1005 family protein.;Transcript_evidence=AK106244 (DDBJ%2C Best hit);ORF_evidence=A2YHW7 (UniProt);InterPro=Protein of unknown function DUF1005 (IPR010410);NIAS_FLcDNA=002-100-D03;Expression=AK106244;TENOR=Os07t0133500-01;KEGG=Os07t0133500-01
Chr07	irgsp1_rep	five_prime_UTR	1772490	1772559	.	-	.	Parent=Os07t0133500-01
Chr07	irgsp1_rep	CDS	1771819	1772489	.	-	0	Parent=Os07t0133500-01
Chr07	irgsp1_rep	CDS	1771018	1771735	.	-	1	Parent=Os07t0133500-01
Chr07	irgsp1_rep	three_prime_UTR	1770644	1771017	.	-	.	Parent=Os07t0133500-01
Chr07	irgsp1_rep	mRNA	1770882	1772490	.	+	.	ID=Os07t0133601-00;Name=Os07t0133601-00;Locus_id=Os07g0133601;Note=Hypothetical protein.;Transcript_evidence=tplb0021a06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0133601-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	1770882	1771357	.	+	.	Parent=Os07t0133601-00
Chr07	irgsp1_rep	CDS	1771358	1771742	.	+	0	Parent=Os07t0133601-00
Chr07	irgsp1_rep	CDS	1771825	1772490	.	+	2	Parent=Os07t0133601-00
Chr07	irgsp1_rep	mRNA	1777480	1780450	.	+	.	ID=Os07t0133700-01;Name=Os07t0133700-01;Locus_id=Os07g0133700;Oryzabase Gene Symbol Synonym(s)=OsFKBP19;Oryzabase Gene Name Synonym(s)=FK506 binding protein 19;Note=Similar to FK506 binding protein.;Transcript_evidence=AK240803 (DDBJ%2C Best hit);ORF_evidence=B4FK23 (UniProt);GO=Biological Process: protein folding (GO:0006457);InterPro=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type%2C domain (IPR001179),Peptidyl-prolyl cis-trans isomerase%2C FKBP-type (IPR023566);NIAS_FLcDNA=J065005A21;Oryzabase=10035;TENOR=Os07t0133700-01;KEGG=Os07t0133700-01
Chr07	irgsp1_rep	five_prime_UTR	1777480	1777530	.	+	.	Parent=Os07t0133700-01
Chr07	irgsp1_rep	CDS	1777531	1777651	.	+	0	Parent=Os07t0133700-01
Chr07	irgsp1_rep	CDS	1778307	1778405	.	+	2	Parent=Os07t0133700-01
Chr07	irgsp1_rep	CDS	1778526	1778611	.	+	2	Parent=Os07t0133700-01
Chr07	irgsp1_rep	CDS	1778719	1778769	.	+	0	Parent=Os07t0133700-01
Chr07	irgsp1_rep	CDS	1778914	1778994	.	+	0	Parent=Os07t0133700-01
Chr07	irgsp1_rep	CDS	1779147	1779191	.	+	0	Parent=Os07t0133700-01
Chr07	irgsp1_rep	CDS	1779426	1779481	.	+	0	Parent=Os07t0133700-01
Chr07	irgsp1_rep	CDS	1779592	1779667	.	+	1	Parent=Os07t0133700-01
Chr07	irgsp1_rep	CDS	1779756	1779854	.	+	0	Parent=Os07t0133700-01
Chr07	irgsp1_rep	three_prime_UTR	1779855	1779859	.	+	.	Parent=Os07t0133700-01
Chr07	irgsp1_rep	three_prime_UTR	1779968	1780450	.	+	.	Parent=Os07t0133700-01
Chr07	irgsp1_rep	mRNA	1788876	1794564	.	-	.	ID=Os07t0134000-02;Name=Os07t0134000-02;Locus_id=Os07g0134000;RAP-DB Gene Symbol Synonym(s)=OsAAP6%2C AAP6%2C OsAAP1%2C AAP1;RAP-DB Gene Name Synonym(s)=amino acid permease 6%2C amino acid permease 1%2C amino acid/auxin permease 1;CGSNL Gene Symbol=AAP6;CGSNL Gene Name=AMINO ACID PERMEASE 6;Oryzabase Gene Symbol Synonym(s)=OsAAP6%2C OsAAP1%2C AAP1;Oryzabase Gene Name Synonym(s)=amino acid permease 6%2C amino acid permease 1%2C amino acid/auxin permease 1;Note=Amino acid permease%2C Transport of amino acids;Transcript_evidence=AK120257,AK106110;ORF_evidence=Q6ZLK8;InterPro=Amino acid transporter%2C transmembrane domain (IPR013057);NIAS_FLcDNA=J013046A03, 001-207-D09;Manual Curation=September 3%2C 2015;Literature_PMID=25907566,23166615;Oryzabase=18486;Expression=AK120257;TENOR=Os07t0134000-02;KEGG=Os07t0134000-02
Chr07	irgsp1_rep	five_prime_UTR	1794473	1794564	.	-	.	Parent=Os07t0134000-02
Chr07	irgsp1_rep	CDS	1794352	1794472	.	-	0	Parent=Os07t0134000-02
Chr07	irgsp1_rep	CDS	1794000	1794233	.	-	2	Parent=Os07t0134000-02
Chr07	irgsp1_rep	CDS	1793804	1793897	.	-	2	Parent=Os07t0134000-02
Chr07	irgsp1_rep	CDS	1792087	1792301	.	-	1	Parent=Os07t0134000-02
Chr07	irgsp1_rep	CDS	1791467	1791609	.	-	2	Parent=Os07t0134000-02
Chr07	irgsp1_rep	CDS	1789188	1789844	.	-	0	Parent=Os07t0134000-02
Chr07	irgsp1_rep	three_prime_UTR	1788876	1789187	.	-	.	Parent=Os07t0134000-02
Chr07	irgsp1_rep	mRNA	1788844	1794319	.	-	.	ID=Os07t0134000-03;Name=Os07t0134000-03;Locus_id=Os07g0134000;CGSNL Gene Symbol=AAP6;CGSNL Gene Name=AMINO ACID PERMEASE 6;Oryzabase Gene Symbol Synonym(s)=OsAAP6%2C OsAAP1%2C AAP1;Oryzabase Gene Name Synonym(s)=amino acid permease 6%2C amino acid permease 1%2C amino acid/auxin permease 1;Note=Similar to Amino acid permease 6.;Transcript_evidence=AK103862 (DDBJ%2C Best hit);ORF_evidence=Q7Y076 (UniProt);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=J033149D13;Oryzabase=18486;Expression=AK103862;TENOR=Os07t0134000-03;KEGG=Os07t0134000-03
Chr07	irgsp1_rep	five_prime_UTR	1794274	1794319	.	-	.	Parent=Os07t0134000-03
Chr07	irgsp1_rep	CDS	1794000	1794273	.	-	0	Parent=Os07t0134000-03
Chr07	irgsp1_rep	CDS	1793804	1793897	.	-	2	Parent=Os07t0134000-03
Chr07	irgsp1_rep	CDS	1792087	1792301	.	-	1	Parent=Os07t0134000-03
Chr07	irgsp1_rep	CDS	1791467	1791609	.	-	2	Parent=Os07t0134000-03
Chr07	irgsp1_rep	CDS	1789188	1789844	.	-	0	Parent=Os07t0134000-03
Chr07	irgsp1_rep	three_prime_UTR	1788844	1789187	.	-	.	Parent=Os07t0134000-03
Chr07	irgsp1_rep	mRNA	1789051	1789764	.	-	.	ID=Os07t0134000-04;Name=Os07t0134000-04;Locus_id=Os07g0134000;CGSNL Gene Symbol=AAP6;CGSNL Gene Name=AMINO ACID PERMEASE 6;Oryzabase Gene Symbol Synonym(s)=OsAAP6%2C OsAAP1%2C AAP1;Oryzabase Gene Name Synonym(s)=amino acid permease 6%2C amino acid permease 1%2C amino acid/auxin permease 1;Note=Similar to Amino acid permease 6.;Transcript_evidence=AK058572 (DDBJ%2C Best hit);ORF_evidence=Q7Y076 (UniProt);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=001-017-E09;Oryzabase=18486;Expression=AK058572;TENOR=Os07t0134000-04;KEGG=Os07t0134000-04
Chr07	irgsp1_rep	five_prime_UTR	1789764	1789764	.	-	.	Parent=Os07t0134000-04
Chr07	irgsp1_rep	CDS	1789188	1789763	.	-	0	Parent=Os07t0134000-04
Chr07	irgsp1_rep	three_prime_UTR	1789051	1789187	.	-	.	Parent=Os07t0134000-04
Chr07	irgsp1_rep	mRNA	1789196	1794234	.	+	.	ID=Os07t0134101-00;Name=Os07t0134101-00;Locus_id=Os07g0134101;Note=Hypothetical protein.;Transcript_evidence=tplb0036o08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0134101-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	1789196	1789214	.	+	.	Parent=Os07t0134101-00
Chr07	irgsp1_rep	CDS	1789215	1789843	.	+	0	Parent=Os07t0134101-00
Chr07	irgsp1_rep	CDS	1791466	1791523	.	+	1	Parent=Os07t0134101-00
Chr07	irgsp1_rep	three_prime_UTR	1791524	1791587	.	+	.	Parent=Os07t0134101-00
Chr07	irgsp1_rep	three_prime_UTR	1792072	1792290	.	+	.	Parent=Os07t0134101-00
Chr07	irgsp1_rep	three_prime_UTR	1793793	1793864	.	+	.	Parent=Os07t0134101-00
Chr07	irgsp1_rep	three_prime_UTR	1793971	1794234	.	+	.	Parent=Os07t0134101-00
Chr07	irgsp1_rep	mRNA	1812461	1816106	.	-	.	ID=Os07t0134200-01;Name=Os07t0134200-01;Locus_id=Os07g0134200;CGSNL Gene Symbol=RLCK222;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 222;Oryzabase Gene Symbol Synonym(s)=OsRLCK222;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 222;Note=Receptor-like protein kinase 3.;Transcript_evidence=AK243601 (DDBJ%2C Best hit);ORF_evidence=Q9M6D8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J100084O15;Oryzabase=18917;TENOR=Os07t0134200-01;KEGG=Os07t0134200-01
Chr07	irgsp1_rep	five_prime_UTR	1816007	1816106	.	-	.	Parent=Os07t0134200-01
Chr07	irgsp1_rep	CDS	1813405	1816006	.	-	0	Parent=Os07t0134200-01
Chr07	irgsp1_rep	CDS	1812742	1813211	.	-	2	Parent=Os07t0134200-01
Chr07	irgsp1_rep	three_prime_UTR	1812461	1812741	.	-	.	Parent=Os07t0134200-01
Chr07	irgsp1_rep	mRNA	1832992	1835740	.	-	.	ID=Os07t0134400-01;Name=Os07t0134400-01;Locus_id=Os07g0134400;Note=Similar to bacterial transferase hexapeptide repeat-containing protein.;Transcript_evidence=AK073204 (DDBJ%2C Best hit);ORF_evidence=XP_002867858.1 (RefSeq);GO=Molecular Function: transferase activity (GO:0016740);InterPro=Bacterial transferase hexapeptide repeat (IPR001451),Trimeric LpxA-like (IPR011004),Hexapeptide transferase%2C conserved site (IPR018357);NIAS_FLcDNA=J033022O11;TENOR=Os07t0134400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	1835708	1835740	.	-	.	Parent=Os07t0134400-01
Chr07	irgsp1_rep	CDS	1835581	1835707	.	-	0	Parent=Os07t0134400-01
Chr07	irgsp1_rep	CDS	1835293	1835494	.	-	2	Parent=Os07t0134400-01
Chr07	irgsp1_rep	CDS	1835098	1835174	.	-	1	Parent=Os07t0134400-01
Chr07	irgsp1_rep	CDS	1834627	1834691	.	-	2	Parent=Os07t0134400-01
Chr07	irgsp1_rep	three_prime_UTR	1834001	1834626	.	-	.	Parent=Os07t0134400-01
Chr07	irgsp1_rep	three_prime_UTR	1833857	1833927	.	-	.	Parent=Os07t0134400-01
Chr07	irgsp1_rep	three_prime_UTR	1833702	1833768	.	-	.	Parent=Os07t0134400-01
Chr07	irgsp1_rep	three_prime_UTR	1833436	1833507	.	-	.	Parent=Os07t0134400-01
Chr07	irgsp1_rep	three_prime_UTR	1832992	1833350	.	-	.	Parent=Os07t0134400-01
Chr07	irgsp1_rep	mRNA	1844593	1848816	.	+	.	ID=Os07t0134500-01;Name=Os07t0134500-01;Locus_id=Os07g0134500;Note=Similar to hydrolase/ protein serine/threonine phosphatase.;Transcript_evidence=AK069557 (DDBJ%2C Best hit);ORF_evidence=NP_194031.5 (RefSeq);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Metallophosphoesterase domain (IPR004843);NIAS_FLcDNA=J023020H16;TENOR=Os07t0134500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	1844593	1844593	.	+	.	Parent=Os07t0134500-01
Chr07	irgsp1_rep	CDS	1844594	1844777	.	+	0	Parent=Os07t0134500-01
Chr07	irgsp1_rep	CDS	1844984	1845183	.	+	2	Parent=Os07t0134500-01
Chr07	irgsp1_rep	CDS	1845440	1845772	.	+	0	Parent=Os07t0134500-01
Chr07	irgsp1_rep	CDS	1845906	1846007	.	+	0	Parent=Os07t0134500-01
Chr07	irgsp1_rep	CDS	1846717	1847014	.	+	0	Parent=Os07t0134500-01
Chr07	irgsp1_rep	CDS	1847474	1847622	.	+	2	Parent=Os07t0134500-01
Chr07	irgsp1_rep	CDS	1847707	1847991	.	+	0	Parent=Os07t0134500-01
Chr07	irgsp1_rep	CDS	1848379	1848576	.	+	0	Parent=Os07t0134500-01
Chr07	irgsp1_rep	three_prime_UTR	1848577	1848816	.	+	.	Parent=Os07t0134500-01
Chr07	irgsp1_rep	mRNA	1851404	1856142	.	+	.	ID=Os07t0134600-01;Name=Os07t0134600-01;Locus_id=Os07g0134600;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK240859 (DDBJ%2C Best hit);ORF_evidence=B6SSJ5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J065022K23;TENOR=Os07t0134600-01;KEGG=Os07t0134600-01
Chr07	irgsp1_rep	five_prime_UTR	1851404	1851556	.	+	.	Parent=Os07t0134600-01
Chr07	irgsp1_rep	CDS	1851557	1853154	.	+	0	Parent=Os07t0134600-01
Chr07	irgsp1_rep	CDS	1854186	1854314	.	+	1	Parent=Os07t0134600-01
Chr07	irgsp1_rep	CDS	1855167	1855189	.	+	1	Parent=Os07t0134600-01
Chr07	irgsp1_rep	CDS	1855303	1855871	.	+	2	Parent=Os07t0134600-01
Chr07	irgsp1_rep	three_prime_UTR	1855872	1856142	.	+	.	Parent=Os07t0134600-01
Chr07	irgsp1_rep	mRNA	1852481	1856002	.	-	.	ID=Os07t0134650-00;Name=Os07t0134650-00;Locus_id=Os07g0134650;Note=Hypothetical protein.;Transcript_evidence=tplb0046o04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0134650-00
Chr07	irgsp1_rep	five_prime_UTR	1855296	1856002	.	-	.	Parent=Os07t0134650-00
Chr07	irgsp1_rep	five_prime_UTR	1854180	1854327	.	-	.	Parent=Os07t0134650-00
Chr07	irgsp1_rep	five_prime_UTR	1852955	1853148	.	-	.	Parent=Os07t0134650-00
Chr07	irgsp1_rep	CDS	1852670	1852954	.	-	0	Parent=Os07t0134650-00
Chr07	irgsp1_rep	three_prime_UTR	1852481	1852669	.	-	.	Parent=Os07t0134650-00
Chr07	irgsp1_rep	mRNA	1856642	1860562	.	+	.	ID=Os07t0134700-00;Name=Os07t0134700-00;Locus_id=Os07g0134700;Note=Mitochodrial transcription termination factor-related family protein.;Transcript_evidence=tplb0010e17 (Wheat FLcDNA);ORF_evidence=NP_001152167.1 (RefSeq);InterPro=Mitochodrial transcription termination factor-related (IPR003690);TENOR=Os07t0134700-00;KEGG=Os07t0134700-00
Chr07	irgsp1_rep	five_prime_UTR	1856642	1856678	.	+	.	Parent=Os07t0134700-00
Chr07	irgsp1_rep	CDS	1856679	1857247	.	+	0	Parent=Os07t0134700-00
Chr07	irgsp1_rep	CDS	1857969	1858374	.	+	1	Parent=Os07t0134700-00
Chr07	irgsp1_rep	CDS	1858828	1859043	.	+	0	Parent=Os07t0134700-00
Chr07	irgsp1_rep	CDS	1859289	1859396	.	+	0	Parent=Os07t0134700-00
Chr07	irgsp1_rep	CDS	1859933	1860207	.	+	0	Parent=Os07t0134700-00
Chr07	irgsp1_rep	CDS	1860310	1860562	.	+	1	Parent=Os07t0134700-00
Chr07	irgsp1_rep	mRNA	1860739	1866531	.	-	.	ID=Os07t0134800-01;Name=Os07t0134800-01;Locus_id=Os07g0134800;CGSNL Gene Symbol=SDH1;CGSNL Gene Name=SUCCINATE DEHYDROGENASE SUBUNIT 1;Oryzabase Gene Symbol Synonym(s)=sdh1%2C FP%2C sdh1-1;Oryzabase Gene Name Synonym(s)=SUCCINATE:UBIQUINONE OXIDOREDUCTASE%2C Succinate dehydrogenase (ubiquinone) flavoprotein subunit%2C Succinate dehydrogenase subunit 1%2C Succinate dehydrogenase (ubiquinone) flavoprotein%2C "Succinate dehydrogenase [ubiquinone] flavoprotein subunit%2C mitochondrial"%2C Flavoprotein subunit of complex II;Note=Similar to Succinate dehydrogenase [ubiquinone] flavoprotein subunit%2C mitochondrial (EC 1.3.5.1) (FP) (Flavoprotein subunit of complex II).;Transcript_evidence=AK072048 (DDBJ%2C Best hit),AK065901 (DDBJ%2C Best hit),AK099460 (DDBJ%2C Best hit);ORF_evidence=Q6ZDY8 (UniProt);GO=Biological Process: tricarboxylic acid cycle (GO:0006099),Biological Process: electron transport chain (GO:0022900),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-CH group of donors (GO:0016627),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Fumarate reductase/succinate dehydrogenase%2C FAD-binding site (IPR003952),Fumarate reductase/succinate dehydrogenase flavoprotein%2C N-terminal (IPR003953),Fumarate reductase/succinate dehydrogenase flavoprotein%2C C-terminal (IPR004112),Succinate dehydrogenase%2C flavoprotein subunit (IPR011281),Succinate dehydrogenase/fumarate reductase%2C flavoprotein subunit (IPR014006),Fumarate reductase/succinate dehydrogenase flavoprotein-like%2C C-terminal (IPR015939);NIAS_FLcDNA=J013112C13,J013048I16,J013023D02;Oryzabase=8747;Expression=AK072048;TENOR=Os07t0134800-01;KEGG=Os07t0134800-01 (EC:1.3.5.1)
Chr07	irgsp1_rep	five_prime_UTR	1866426	1866531	.	-	.	Parent=Os07t0134800-01
Chr07	irgsp1_rep	CDS	1866318	1866425	.	-	0	Parent=Os07t0134800-01
Chr07	irgsp1_rep	CDS	1865928	1866083	.	-	0	Parent=Os07t0134800-01
Chr07	irgsp1_rep	CDS	1864818	1864905	.	-	0	Parent=Os07t0134800-01
Chr07	irgsp1_rep	CDS	1864506	1864652	.	-	2	Parent=Os07t0134800-01
Chr07	irgsp1_rep	CDS	1864282	1864422	.	-	2	Parent=Os07t0134800-01
Chr07	irgsp1_rep	CDS	1863497	1863582	.	-	2	Parent=Os07t0134800-01
Chr07	irgsp1_rep	CDS	1863312	1863404	.	-	0	Parent=Os07t0134800-01
Chr07	irgsp1_rep	CDS	1863164	1863227	.	-	0	Parent=Os07t0134800-01
Chr07	irgsp1_rep	CDS	1862871	1863014	.	-	2	Parent=Os07t0134800-01
Chr07	irgsp1_rep	CDS	1862594	1862781	.	-	2	Parent=Os07t0134800-01
Chr07	irgsp1_rep	CDS	1862333	1862507	.	-	0	Parent=Os07t0134800-01
Chr07	irgsp1_rep	CDS	1862079	1862249	.	-	2	Parent=Os07t0134800-01
Chr07	irgsp1_rep	CDS	1861648	1861717	.	-	2	Parent=Os07t0134800-01
Chr07	irgsp1_rep	CDS	1861434	1861554	.	-	1	Parent=Os07t0134800-01
Chr07	irgsp1_rep	CDS	1861303	1861340	.	-	0	Parent=Os07t0134800-01
Chr07	irgsp1_rep	CDS	1860927	1861029	.	-	1	Parent=Os07t0134800-01
Chr07	irgsp1_rep	three_prime_UTR	1860739	1860926	.	-	.	Parent=Os07t0134800-01
Chr07	irgsp1_rep	mRNA	1860647	1863567	.	-	.	ID=Os07t0134800-04;Name=Os07t0134800-04;Locus_id=Os07g0134800;CGSNL Gene Symbol=SDH1;CGSNL Gene Name=SUCCINATE DEHYDROGENASE SUBUNIT 1;Oryzabase Gene Symbol Synonym(s)=sdh1%2C FP%2C sdh1-1;Oryzabase Gene Name Synonym(s)=SUCCINATE:UBIQUINONE OXIDOREDUCTASE%2C Succinate dehydrogenase (ubiquinone) flavoprotein subunit%2C Succinate dehydrogenase subunit 1%2C Succinate dehydrogenase (ubiquinone) flavoprotein%2C "Succinate dehydrogenase [ubiquinone] flavoprotein subunit%2C mitochondrial"%2C Flavoprotein subunit of complex II;Note=Similar to Succinate dehydrogenase.;Transcript_evidence=AK062102 (DDBJ%2C Best hit);ORF_evidence=Q6ZDY8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Fumarate reductase/succinate dehydrogenase flavoprotein%2C N-terminal (IPR003953),Fumarate reductase/succinate dehydrogenase flavoprotein%2C C-terminal (IPR004112),Fumarate reductase/succinate dehydrogenase flavoprotein-like%2C C-terminal (IPR015939);NIAS_FLcDNA=001-045-A10;Oryzabase=8747;Expression=AK062102;TENOR=Os07t0134800-04;KEGG=Os07t0134800-04 (EC:1.3.5.1)
Chr07	irgsp1_rep	five_prime_UTR	1863566	1863567	.	-	.	Parent=Os07t0134800-04
Chr07	irgsp1_rep	CDS	1863497	1863565	.	-	0	Parent=Os07t0134800-04
Chr07	irgsp1_rep	CDS	1863312	1863404	.	-	0	Parent=Os07t0134800-04
Chr07	irgsp1_rep	CDS	1863164	1863227	.	-	0	Parent=Os07t0134800-04
Chr07	irgsp1_rep	CDS	1862871	1863014	.	-	2	Parent=Os07t0134800-04
Chr07	irgsp1_rep	CDS	1862594	1862781	.	-	2	Parent=Os07t0134800-04
Chr07	irgsp1_rep	CDS	1862333	1862507	.	-	0	Parent=Os07t0134800-04
Chr07	irgsp1_rep	CDS	1862079	1862249	.	-	2	Parent=Os07t0134800-04
Chr07	irgsp1_rep	CDS	1861648	1861717	.	-	2	Parent=Os07t0134800-04
Chr07	irgsp1_rep	CDS	1861434	1861554	.	-	1	Parent=Os07t0134800-04
Chr07	irgsp1_rep	CDS	1861303	1861340	.	-	0	Parent=Os07t0134800-04
Chr07	irgsp1_rep	CDS	1860927	1861029	.	-	1	Parent=Os07t0134800-04
Chr07	irgsp1_rep	three_prime_UTR	1860647	1860926	.	-	.	Parent=Os07t0134800-04
Chr07	irgsp1_rep	mRNA	1860772	1862444	.	+	.	ID=Os07t0135550-00;Name=Os07t0135550-00;Locus_id=Os07g0135550;Note=Non-protein coding transcript.;Transcript_evidence=BT019039 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0135550-00
Chr07	irgsp1_rep	exon	1860772	1861031	.	+	.	Parent=Os07t0135550-00
Chr07	irgsp1_rep	exon	1861308	1861340	.	+	.	Parent=Os07t0135550-00
Chr07	irgsp1_rep	exon	1861434	1861556	.	+	.	Parent=Os07t0135550-00
Chr07	irgsp1_rep	exon	1861656	1861701	.	+	.	Parent=Os07t0135550-00
Chr07	irgsp1_rep	exon	1862057	1862256	.	+	.	Parent=Os07t0135550-00
Chr07	irgsp1_rep	exon	1862342	1862444	.	+	.	Parent=Os07t0135550-00
Chr07	irgsp1_rep	mRNA	1912083	1914175	.	+	.	ID=Os07t0136300-01;Name=Os07t0136300-01;Locus_id=Os07g0136300;Oryzabase Gene Name Synonym(s)=Conserved hypothetical protein;Note=Similar to cDNA%2C clone: J075163H13%2C full insert sequence.;Transcript_evidence=AK064609 (DDBJ%2C Best hit);ORF_evidence=B7F9C0 (UniProt);NIAS_FLcDNA=002-113-A12;Oryzabase=22032;Expression=AK064609;TENOR=Os07t0136300-01;KEGG=Os07t0136300-01
Chr07	irgsp1_rep	five_prime_UTR	1912083	1912191	.	+	.	Parent=Os07t0136300-01
Chr07	irgsp1_rep	CDS	1912192	1912299	.	+	0	Parent=Os07t0136300-01
Chr07	irgsp1_rep	CDS	1913761	1914000	.	+	0	Parent=Os07t0136300-01
Chr07	irgsp1_rep	three_prime_UTR	1914001	1914175	.	+	.	Parent=Os07t0136300-01
Chr07	irgsp1_rep	mRNA	1925715	1927041	.	+	.	ID=Os07t0136400-01;Name=Os07t0136400-01;Locus_id=Os07g0136400;Note=Conserved hypothetical protein.;Transcript_evidence=AK110793 (DDBJ%2C Best hit);ORF_evidence=B8B733 (UniProt);NIAS_FLcDNA=002-171-D03;TENOR=Os07t0136400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	1925715	1925820	.	+	.	Parent=Os07t0136400-01
Chr07	irgsp1_rep	CDS	1925821	1926090	.	+	0	Parent=Os07t0136400-01
Chr07	irgsp1_rep	three_prime_UTR	1926091	1927041	.	+	.	Parent=Os07t0136400-01
Chr07	irgsp1_rep	mRNA	1928640	1930430	.	-	.	ID=Os07t0136500-01;Name=Os07t0136500-01;Locus_id=Os07g0136500;Note=Hypothetical gene.;Transcript_evidence=AK242192 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J075163H13;TENOR=Os07t0136500-01;KEGG=Os07t0136500-01
Chr07	irgsp1_rep	five_prime_UTR	1930326	1930430	.	-	.	Parent=Os07t0136500-01
Chr07	irgsp1_rep	CDS	1930224	1930325	.	-	0	Parent=Os07t0136500-01
Chr07	irgsp1_rep	CDS	1928783	1929022	.	-	0	Parent=Os07t0136500-01
Chr07	irgsp1_rep	three_prime_UTR	1928640	1928782	.	-	.	Parent=Os07t0136500-01
Chr07	irgsp1_rep	mRNA	1944420	1960442	.	+	.	ID=Os07t0136800-01;Name=Os07t0136800-01;Locus_id=Os07g0136800;Note=Homeodomain-like containing protein.;Transcript_evidence=AK073763 (DDBJ%2C Best hit);ORF_evidence=A3BGG1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);NIAS_FLcDNA=J033068G07;Expression=AK073763;TENOR=Os07t0136800-01;KEGG=Os07t0136800-01
Chr07	irgsp1_rep	five_prime_UTR	1944420	1944822	.	+	.	Parent=Os07t0136800-01
Chr07	irgsp1_rep	five_prime_UTR	1947395	1947759	.	+	.	Parent=Os07t0136800-01
Chr07	irgsp1_rep	five_prime_UTR	1949611	1949704	.	+	.	Parent=Os07t0136800-01
Chr07	irgsp1_rep	five_prime_UTR	1949778	1949896	.	+	.	Parent=Os07t0136800-01
Chr07	irgsp1_rep	five_prime_UTR	1949985	1950099	.	+	.	Parent=Os07t0136800-01
Chr07	irgsp1_rep	five_prime_UTR	1950176	1950288	.	+	.	Parent=Os07t0136800-01
Chr07	irgsp1_rep	five_prime_UTR	1950526	1950617	.	+	.	Parent=Os07t0136800-01
Chr07	irgsp1_rep	five_prime_UTR	1951506	1951554	.	+	.	Parent=Os07t0136800-01
Chr07	irgsp1_rep	five_prime_UTR	1952154	1952391	.	+	.	Parent=Os07t0136800-01
Chr07	irgsp1_rep	five_prime_UTR	1953429	1953513	.	+	.	Parent=Os07t0136800-01
Chr07	irgsp1_rep	five_prime_UTR	1953647	1953816	.	+	.	Parent=Os07t0136800-01
Chr07	irgsp1_rep	five_prime_UTR	1954320	1954441	.	+	.	Parent=Os07t0136800-01
Chr07	irgsp1_rep	five_prime_UTR	1955303	1955385	.	+	.	Parent=Os07t0136800-01
Chr07	irgsp1_rep	five_prime_UTR	1956020	1956222	.	+	.	Parent=Os07t0136800-01
Chr07	irgsp1_rep	five_prime_UTR	1957903	1958009	.	+	.	Parent=Os07t0136800-01
Chr07	irgsp1_rep	five_prime_UTR	1958604	1958611	.	+	.	Parent=Os07t0136800-01
Chr07	irgsp1_rep	CDS	1958612	1958866	.	+	0	Parent=Os07t0136800-01
Chr07	irgsp1_rep	three_prime_UTR	1958867	1959471	.	+	.	Parent=Os07t0136800-01
Chr07	irgsp1_rep	three_prime_UTR	1959577	1959700	.	+	.	Parent=Os07t0136800-01
Chr07	irgsp1_rep	three_prime_UTR	1959809	1960001	.	+	.	Parent=Os07t0136800-01
Chr07	irgsp1_rep	three_prime_UTR	1960115	1960244	.	+	.	Parent=Os07t0136800-01
Chr07	irgsp1_rep	three_prime_UTR	1960341	1960442	.	+	.	Parent=Os07t0136800-01
Chr07	irgsp1_rep	mRNA	1944431	1959015	.	+	.	ID=Os07t0136800-02;Name=Os07t0136800-02;Locus_id=Os07g0136800;Note=Similar to CytoChrome P450 90D2.;Transcript_evidence=AK101929 (DDBJ%2C Best hit);ORF_evidence=Q94IW5 (UniProt);NIAS_FLcDNA=J033072F08;TENOR=Os07t0136800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	1944431	1944822	.	+	.	Parent=Os07t0136800-02
Chr07	irgsp1_rep	five_prime_UTR	1947395	1947759	.	+	.	Parent=Os07t0136800-02
Chr07	irgsp1_rep	five_prime_UTR	1948105	1948262	.	+	.	Parent=Os07t0136800-02
Chr07	irgsp1_rep	five_prime_UTR	1949778	1949896	.	+	.	Parent=Os07t0136800-02
Chr07	irgsp1_rep	five_prime_UTR	1949985	1950099	.	+	.	Parent=Os07t0136800-02
Chr07	irgsp1_rep	five_prime_UTR	1950176	1950288	.	+	.	Parent=Os07t0136800-02
Chr07	irgsp1_rep	five_prime_UTR	1950526	1950617	.	+	.	Parent=Os07t0136800-02
Chr07	irgsp1_rep	five_prime_UTR	1951506	1951554	.	+	.	Parent=Os07t0136800-02
Chr07	irgsp1_rep	five_prime_UTR	1952154	1952178	.	+	.	Parent=Os07t0136800-02
Chr07	irgsp1_rep	CDS	1952179	1952391	.	+	0	Parent=Os07t0136800-02
Chr07	irgsp1_rep	CDS	1953429	1953473	.	+	0	Parent=Os07t0136800-02
Chr07	irgsp1_rep	three_prime_UTR	1953474	1953513	.	+	.	Parent=Os07t0136800-02
Chr07	irgsp1_rep	three_prime_UTR	1953647	1953816	.	+	.	Parent=Os07t0136800-02
Chr07	irgsp1_rep	three_prime_UTR	1954320	1954441	.	+	.	Parent=Os07t0136800-02
Chr07	irgsp1_rep	three_prime_UTR	1955303	1955385	.	+	.	Parent=Os07t0136800-02
Chr07	irgsp1_rep	three_prime_UTR	1956020	1956222	.	+	.	Parent=Os07t0136800-02
Chr07	irgsp1_rep	three_prime_UTR	1958604	1959015	.	+	.	Parent=Os07t0136800-02
Chr07	irgsp1_rep	mRNA	1960658	1961098	.	+	.	ID=Os07t0136866-00;Name=Os07t0136866-00;Locus_id=Os07g0136866;Note=Similar to BRI1-KD interacting protein 133 (Fragment).;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001175048.1 (RefSeq);TENOR=Os07t0136866-00
Chr07	irgsp1_rep	CDS	1960658	1960771	.	+	0	Parent=Os07t0136866-00
Chr07	irgsp1_rep	CDS	1960985	1961098	.	+	0	Parent=Os07t0136866-00
Chr07	irgsp1_rep	mRNA	1962092	1966517	.	+	.	ID=Os07t0137000-01;Name=Os07t0137000-01;Locus_id=Os07g0137000;Note=Myb transcription factor domain containing protein.;Transcript_evidence=AK110988 (DDBJ%2C Best hit);ORF_evidence=NP_001058860.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),MYB-like (IPR017877);NIAS_FLcDNA=002-174-D07;Expression=AK110988;TENOR=Os07t0137000-01;KEGG=Os07t0137000-01
Chr07	irgsp1_rep	five_prime_UTR	1962092	1962459	.	+	.	Parent=Os07t0137000-01
Chr07	irgsp1_rep	five_prime_UTR	1962703	1962897	.	+	.	Parent=Os07t0137000-01
Chr07	irgsp1_rep	five_prime_UTR	1963453	1963653	.	+	.	Parent=Os07t0137000-01
Chr07	irgsp1_rep	CDS	1963654	1963658	.	+	0	Parent=Os07t0137000-01
Chr07	irgsp1_rep	CDS	1964186	1964344	.	+	1	Parent=Os07t0137000-01
Chr07	irgsp1_rep	CDS	1964423	1964480	.	+	1	Parent=Os07t0137000-01
Chr07	irgsp1_rep	three_prime_UTR	1964481	1964658	.	+	.	Parent=Os07t0137000-01
Chr07	irgsp1_rep	three_prime_UTR	1964771	1965396	.	+	.	Parent=Os07t0137000-01
Chr07	irgsp1_rep	three_prime_UTR	1965511	1965763	.	+	.	Parent=Os07t0137000-01
Chr07	irgsp1_rep	three_prime_UTR	1965840	1965973	.	+	.	Parent=Os07t0137000-01
Chr07	irgsp1_rep	three_prime_UTR	1966044	1966517	.	+	.	Parent=Os07t0137000-01
Chr07	irgsp1_rep	mRNA	1969774	1971942	.	+	.	ID=Os07t0137200-01;Name=Os07t0137200-01;Locus_id=Os07g0137200;Note=Conserved hypothetical protein.;Transcript_evidence=AK121012 (DDBJ%2C Best hit);ORF_evidence=B8B737 (UniProt);NIAS_FLcDNA=J023047D20;Expression=AK121012;TENOR=Os07t0137200-01;KEGG=Os07t0137200-01
Chr07	irgsp1_rep	five_prime_UTR	1969774	1969899	.	+	.	Parent=Os07t0137200-01
Chr07	irgsp1_rep	CDS	1969900	1969995	.	+	0	Parent=Os07t0137200-01
Chr07	irgsp1_rep	CDS	1971429	1971532	.	+	0	Parent=Os07t0137200-01
Chr07	irgsp1_rep	CDS	1971633	1971753	.	+	1	Parent=Os07t0137200-01
Chr07	irgsp1_rep	three_prime_UTR	1971754	1971942	.	+	.	Parent=Os07t0137200-01
Chr07	irgsp1_rep	mRNA	1978056	1981459	.	-	.	ID=Os07t0137500-01;Name=Os07t0137500-01;Locus_id=Os07g0137500;Note=Transposase%2C MuDR%2C plant domain containing protein.;Transcript_evidence=AK119401 (DDBJ%2C Best hit);ORF_evidence=Q7XWS4 (UniProt);InterPro=Transposase%2C MuDR%2C plant (IPR004332);NIAS_FLcDNA=001-132-E04;TENOR=Os07t0137500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	1980418	1981459	.	-	.	Parent=Os07t0137500-01
Chr07	irgsp1_rep	CDS	1979992	1980417	.	-	0	Parent=Os07t0137500-01
Chr07	irgsp1_rep	three_prime_UTR	1978602	1979991	.	-	.	Parent=Os07t0137500-01
Chr07	irgsp1_rep	three_prime_UTR	1978056	1978493	.	-	.	Parent=Os07t0137500-01
Chr07	irgsp1_rep	mRNA	1985492	1987785	.	+	.	ID=Os07t0137600-01;Name=Os07t0137600-01;Locus_id=Os07g0137600;Note=Conserved hypothetical protein.;Transcript_evidence=AK120248 (DDBJ%2C Best hit);ORF_evidence=B8B741 (UniProt);NIAS_FLcDNA=J013044N05;Expression=AK120248;TENOR=Os07t0137600-01;KEGG=Os07t0137600-01
Chr07	irgsp1_rep	five_prime_UTR	1985492	1985617	.	+	.	Parent=Os07t0137600-01
Chr07	irgsp1_rep	CDS	1985618	1985713	.	+	0	Parent=Os07t0137600-01
Chr07	irgsp1_rep	CDS	1987195	1987325	.	+	0	Parent=Os07t0137600-01
Chr07	irgsp1_rep	CDS	1987434	1987545	.	+	1	Parent=Os07t0137600-01
Chr07	irgsp1_rep	three_prime_UTR	1987546	1987785	.	+	.	Parent=Os07t0137600-01
Chr07	irgsp1_rep	mRNA	1992626	1994724	.	-	.	ID=Os07t0137800-00;Name=Os07t0137800-00;Locus_id=Os07g0137800;Oryzabase Gene Symbol Synonym(s)=OsSTA186;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=tplb0009a10 (Wheat FLcDNA);ORF_evidence=Q3LFP8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=19467;TENOR=Os07t0137800-00;KEGG=Os07t0137800-00
Chr07	irgsp1_rep	CDS	1994436	1994724	.	-	0	Parent=Os07t0137800-00
Chr07	irgsp1_rep	CDS	1993848	1994342	.	-	2	Parent=Os07t0137800-00
Chr07	irgsp1_rep	CDS	1993565	1993651	.	-	2	Parent=Os07t0137800-00
Chr07	irgsp1_rep	CDS	1993403	1993473	.	-	2	Parent=Os07t0137800-00
Chr07	irgsp1_rep	CDS	1992626	1993300	.	-	0	Parent=Os07t0137800-00
Chr07	irgsp1_rep	mRNA	1996747	2002765	.	+	.	ID=Os07t0137900-01;Name=Os07t0137900-01;Locus_id=Os07g0137900;Note=Similar to Grb10 interacting GYF protein 2.;Transcript_evidence=AK070328 (DDBJ%2C Best hit);ORF_evidence=Q6ZE11 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=GYF (IPR003169);NIAS_FLcDNA=J023049B19;Expression=AK070328;TENOR=Os07t0137900-01;KEGG=Os07t0137900-01
Chr07	irgsp1_rep	five_prime_UTR	1996747	1996830	.	+	.	Parent=Os07t0137900-01
Chr07	irgsp1_rep	CDS	1996831	1996918	.	+	0	Parent=Os07t0137900-01
Chr07	irgsp1_rep	CDS	1997932	1997999	.	+	2	Parent=Os07t0137900-01
Chr07	irgsp1_rep	CDS	1998165	1999094	.	+	0	Parent=Os07t0137900-01
Chr07	irgsp1_rep	CDS	1999182	1999263	.	+	0	Parent=Os07t0137900-01
Chr07	irgsp1_rep	CDS	1999392	1999457	.	+	2	Parent=Os07t0137900-01
Chr07	irgsp1_rep	CDS	2000508	2001152	.	+	2	Parent=Os07t0137900-01
Chr07	irgsp1_rep	CDS	2001270	2002765	.	+	2	Parent=Os07t0137900-01
Chr07	irgsp1_rep	mRNA	2002413	2005978	.	+	.	ID=Os07t0137900-02;Name=Os07t0137900-02;Locus_id=Os07g0137900;Note=Hypothetical conserved gene.;Transcript_evidence=AK072448 (DDBJ%2C Best hit);ORF_evidence=Q6ZE11 (UniProt);NIAS_FLcDNA=J023114G23;Expression=AK072448;TENOR=Os07t0137900-02;KEGG=Os07t0137900-02
Chr07	irgsp1_rep	five_prime_UTR	2002413	2002414	.	+	.	Parent=Os07t0137900-02
Chr07	irgsp1_rep	CDS	2002415	2004021	.	+	0	Parent=Os07t0137900-02
Chr07	irgsp1_rep	CDS	2004908	2005071	.	+	1	Parent=Os07t0137900-02
Chr07	irgsp1_rep	CDS	2005154	2005213	.	+	2	Parent=Os07t0137900-02
Chr07	irgsp1_rep	CDS	2005323	2005687	.	+	2	Parent=Os07t0137900-02
Chr07	irgsp1_rep	three_prime_UTR	2005688	2005978	.	+	.	Parent=Os07t0137900-02
Chr07	irgsp1_rep	mRNA	2007670	2012928	.	+	.	ID=Os07t0138100-01;Name=Os07t0138100-01;Locus_id=Os07g0138100;RAP-DB Gene Symbol Synonym(s)=OsSWAP70B;Oryzabase Gene Symbol Synonym(s)=OsSWAP70B%2C SWAP70B%2C SIP21;Oryzabase Gene Name Synonym(s)=SKIP interacting protein 21%2C SKIPa-interacting protein 21%2C SKIPa-interacting protein 21;Note=Rac/Rop guanine nucleotide exchange factor%2C Regulation of immune responses;Transcript_evidence=AK059496;ORF_evidence=Q6ZE09;InterPro=Pleckstrin homology-like domain (IPR011993),Pleckstrin homology domain (IPR001849);NIAS_FLcDNA=001-028-H09;Manual Curation=March 10%2C 2015;Literature_PMID=22142166;Oryzabase=10198;Expression=AK059496;TENOR=Os07t0138100-01;KEGG=Os07t0138100-01
Chr07	irgsp1_rep	five_prime_UTR	2007670	2007720	.	+	.	Parent=Os07t0138100-01
Chr07	irgsp1_rep	CDS	2007721	2007744	.	+	0	Parent=Os07t0138100-01
Chr07	irgsp1_rep	CDS	2007900	2008004	.	+	0	Parent=Os07t0138100-01
Chr07	irgsp1_rep	CDS	2008690	2008751	.	+	0	Parent=Os07t0138100-01
Chr07	irgsp1_rep	CDS	2008833	2008916	.	+	1	Parent=Os07t0138100-01
Chr07	irgsp1_rep	CDS	2009003	2009034	.	+	1	Parent=Os07t0138100-01
Chr07	irgsp1_rep	CDS	2009137	2009218	.	+	2	Parent=Os07t0138100-01
Chr07	irgsp1_rep	CDS	2010687	2010915	.	+	1	Parent=Os07t0138100-01
Chr07	irgsp1_rep	CDS	2011635	2011862	.	+	0	Parent=Os07t0138100-01
Chr07	irgsp1_rep	CDS	2012025	2012317	.	+	0	Parent=Os07t0138100-01
Chr07	irgsp1_rep	CDS	2012442	2012757	.	+	1	Parent=Os07t0138100-01
Chr07	irgsp1_rep	three_prime_UTR	2012758	2012928	.	+	.	Parent=Os07t0138100-01
Chr07	irgsp1_rep	mRNA	2007670	2012928	.	+	.	ID=Os07t0138100-02;Name=Os07t0138100-02;Locus_id=Os07g0138100;Oryzabase Gene Symbol Synonym(s)=OsSWAP70B%2C SWAP70B%2C SIP21;Oryzabase Gene Name Synonym(s)=SKIP interacting protein 21%2C SKIPa-interacting protein 21%2C SKIPa-interacting protein 21;Note=Similar to PH domain containing protein.;Transcript_evidence=AK067870 (DDBJ%2C Best hit);ORF_evidence=B6TX43 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Pleckstrin homology-type (IPR011993);NIAS_FLcDNA=J013126D19;Oryzabase=10198;TENOR=Os07t0138100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	2007670	2007720	.	+	.	Parent=Os07t0138100-02
Chr07	irgsp1_rep	CDS	2007721	2007744	.	+	0	Parent=Os07t0138100-02
Chr07	irgsp1_rep	CDS	2007900	2008004	.	+	0	Parent=Os07t0138100-02
Chr07	irgsp1_rep	CDS	2008690	2008751	.	+	0	Parent=Os07t0138100-02
Chr07	irgsp1_rep	CDS	2008833	2008916	.	+	1	Parent=Os07t0138100-02
Chr07	irgsp1_rep	CDS	2009003	2009051	.	+	1	Parent=Os07t0138100-02
Chr07	irgsp1_rep	three_prime_UTR	2009052	2009218	.	+	.	Parent=Os07t0138100-02
Chr07	irgsp1_rep	three_prime_UTR	2010687	2010915	.	+	.	Parent=Os07t0138100-02
Chr07	irgsp1_rep	three_prime_UTR	2011635	2011862	.	+	.	Parent=Os07t0138100-02
Chr07	irgsp1_rep	three_prime_UTR	2012025	2012317	.	+	.	Parent=Os07t0138100-02
Chr07	irgsp1_rep	three_prime_UTR	2012442	2012928	.	+	.	Parent=Os07t0138100-02
Chr07	irgsp1_rep	mRNA	2023158	2025061	.	+	.	ID=Os07t0138200-01;Name=Os07t0138200-01;Locus_id=Os07g0138200;RAP-DB Gene Symbol Synonym(s)=ONAC096;CGSNL Gene Symbol=NAC96;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 96;Oryzabase Gene Symbol Synonym(s)=NAC94%2C ONAC096%2C ONAC96%2C NAC4%2C OsNAC4;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 94%2C NAC domain-containing protein 096%2C NAC domain-containing protein 96;Note=NAC transcription factor%2C ABA-induced leaf senescence and tillering;Transcript_evidence=Inferred from literature;ORF_evidence=Q8GW08;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=NAC domain superfamily (IPR036093),NAC domain (IPR003441);Manual Curation=October 30%2C 2019;Literature_PMID=31652646;Oryzabase=11176;TENOR=Os07t0138200-00
Chr07	irgsp1_rep	CDS	2023158	2023389	.	+	0	Parent=Os07t0138200-01
Chr07	irgsp1_rep	CDS	2023764	2024083	.	+	2	Parent=Os07t0138200-01
Chr07	irgsp1_rep	CDS	2024582	2025061	.	+	0	Parent=Os07t0138200-01
Chr07	irgsp1_rep	mRNA	2035172	2036742	.	-	.	ID=Os07t0138400-01;Name=Os07t0138400-01;Locus_id=Os07g0138400;RAP-DB Gene Symbol Synonym(s)=C3H47%2C OsC3H47%2C OsCCCH-Zn-10;RAP-DB Gene Name Synonym(s)=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 47%2C Zinc finger CCCH domain-containing protein 47;CGSNL Gene Symbol=C3H47;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 47;Oryzabase Gene Symbol Synonym(s)=OsC3H47%2C OsCCCH-Zn-10;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 47;Note=CCCH-type zinc finger protein%2C Drought tolerance;Transcript_evidence=AK111433;ORF_evidence=Q8GW05;GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=002-182-H10;Manual Curation=June 8%2C 2015;Literature_PMID=26047696;Oryzabase=8613;TENOR=Os07t0138400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	2036711	2036742	.	-	.	Parent=Os07t0138400-01
Chr07	irgsp1_rep	CDS	2035544	2036710	.	-	0	Parent=Os07t0138400-01
Chr07	irgsp1_rep	three_prime_UTR	2035172	2035543	.	-	.	Parent=Os07t0138400-01
Chr07	irgsp1_rep	mRNA	2062181	2063847	.	-	.	ID=Os07t0139000-00;Name=Os07t0139000-00;Locus_id=Os07g0139000;CGSNL Gene Symbol=C3H48;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48;Oryzabase Gene Symbol Synonym(s)=OsC3H48;Oryzabase Gene Name Synonym(s)=Putative zinc finger CCCH domain-containing protein 48;Note=Putative zinc finger CCCH domain-containing protein 48.;Transcript_evidence=Q8GVZ8 (UniProt);ORF_evidence=Q8GVZ8 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);Oryzabase=8614;TENOR=Os07t0139000-00
Chr07	irgsp1_rep	CDS	2062567	2063847	.	-	0	Parent=Os07t0139000-00
Chr07	irgsp1_rep	CDS	2062181	2062390	.	-	0	Parent=Os07t0139000-00
Chr07	irgsp1_rep	mRNA	2067244	2068234	.	-	.	ID=Os07t0139300-01;Name=Os07t0139300-01;Locus_id=Os07g0139300;RAP-DB Gene Symbol Synonym(s)=G1%2C g1 (lng)%2C lng%2C g1%2C ELE;RAP-DB Gene Name Synonym(s)=LONG STERILE LEMMAS 1%2C long sterile lemmas1%2C long sterile lemmas 1%2C long sterile lemmas-1%2C elongated empty glume%2C long sterile lemma/glume1;CGSNL Gene Symbol=G1;CGSNL Gene Name=LONG STERILE LEMMAS 1;Oryzabase Gene Symbol Synonym(s)=g1 (lng)%2C lng%2C g1%2C ELE%2C OsG1%2C G1/ELE;Oryzabase Gene Name Synonym(s)=long sterile lemmas1%2C long sterile lemmas 1%2C long sterile lemmas-1%2C elongated empty glume%2C long sterile lemma/glume1;Note=ALOG domain-containing nuclear protein%2C Transcriptional regulation%2C Specification of sterile lemma identity;Transcript_evidence=AB512480,FJ502130;ORF_evidence=Q8GVZ6;InterPro=ALOG domain (IPR006936);Manual Curation=July 8%2C 2015;Literature_PMID=19901325,20227044;Oryzabase=811;TENOR=Os07t0139300-00
Chr07	irgsp1_rep	five_prime_UTR	2068175	2068234	.	-	.	Parent=Os07t0139300-01
Chr07	irgsp1_rep	CDS	2067344	2068174	.	-	0	Parent=Os07t0139300-01
Chr07	irgsp1_rep	three_prime_UTR	2067244	2067343	.	-	.	Parent=Os07t0139300-01
Chr07	irgsp1_rep	mRNA	2080061	2083382	.	+	.	ID=Os07t0139400-01;Name=Os07t0139400-01;Locus_id=Os07g0139400;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK065558 (DDBJ%2C Best hit);ORF_evidence=Q2LC83 (UniProt);GO=Biological Process: galactose metabolic process (GO:0006012),Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: UDP-glucose 4-epimerase activity (GO:0003978),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),UDP-glucose 4-epimerase (IPR005886),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013033B01;Expression=AK065558;TENOR=Os07t0139400-01;KEGG=Os07t0139400-01 (EC:5.1.3.5)
Chr07	irgsp1_rep	five_prime_UTR	2080061	2080257	.	+	.	Parent=Os07t0139400-01
Chr07	irgsp1_rep	five_prime_UTR	2080634	2080733	.	+	.	Parent=Os07t0139400-01
Chr07	irgsp1_rep	CDS	2080734	2080797	.	+	0	Parent=Os07t0139400-01
Chr07	irgsp1_rep	CDS	2081080	2081207	.	+	2	Parent=Os07t0139400-01
Chr07	irgsp1_rep	CDS	2081315	2081428	.	+	0	Parent=Os07t0139400-01
Chr07	irgsp1_rep	CDS	2081525	2081632	.	+	0	Parent=Os07t0139400-01
Chr07	irgsp1_rep	CDS	2081762	2081853	.	+	0	Parent=Os07t0139400-01
Chr07	irgsp1_rep	CDS	2081927	2082068	.	+	1	Parent=Os07t0139400-01
Chr07	irgsp1_rep	CDS	2082145	2082245	.	+	0	Parent=Os07t0139400-01
Chr07	irgsp1_rep	CDS	2082338	2082467	.	+	1	Parent=Os07t0139400-01
Chr07	irgsp1_rep	CDS	2082623	2082767	.	+	0	Parent=Os07t0139400-01
Chr07	irgsp1_rep	CDS	2082882	2083123	.	+	2	Parent=Os07t0139400-01
Chr07	irgsp1_rep	three_prime_UTR	2083124	2083382	.	+	.	Parent=Os07t0139400-01
Chr07	irgsp1_rep	mRNA	2080087	2083349	.	+	.	ID=Os07t0139400-02;Name=Os07t0139400-02;Locus_id=Os07g0139400;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK099140 (DDBJ%2C Best hit),AK099183 (DDBJ%2C Best hit);ORF_evidence=Q2LC83 (UniProt);GO=Biological Process: galactose metabolic process (GO:0006012),Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: UDP-glucose 4-epimerase activity (GO:0003978),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),UDP-glucose 4-epimerase (IPR005886),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023053D14,J023099C15;Expression=AK099140;TENOR=Os07t0139400-02;KEGG=Os07t0139400-02 (EC:5.1.3.5)
Chr07	irgsp1_rep	five_prime_UTR	2080087	2080257	.	+	.	Parent=Os07t0139400-02
Chr07	irgsp1_rep	five_prime_UTR	2080634	2080733	.	+	.	Parent=Os07t0139400-02
Chr07	irgsp1_rep	CDS	2080734	2080797	.	+	0	Parent=Os07t0139400-02
Chr07	irgsp1_rep	CDS	2081080	2081207	.	+	2	Parent=Os07t0139400-02
Chr07	irgsp1_rep	CDS	2081315	2081428	.	+	0	Parent=Os07t0139400-02
Chr07	irgsp1_rep	CDS	2081525	2081632	.	+	0	Parent=Os07t0139400-02
Chr07	irgsp1_rep	CDS	2081762	2081853	.	+	0	Parent=Os07t0139400-02
Chr07	irgsp1_rep	CDS	2081927	2082068	.	+	1	Parent=Os07t0139400-02
Chr07	irgsp1_rep	CDS	2082145	2082245	.	+	0	Parent=Os07t0139400-02
Chr07	irgsp1_rep	CDS	2082338	2082467	.	+	1	Parent=Os07t0139400-02
Chr07	irgsp1_rep	CDS	2082623	2082767	.	+	0	Parent=Os07t0139400-02
Chr07	irgsp1_rep	CDS	2082882	2083123	.	+	2	Parent=Os07t0139400-02
Chr07	irgsp1_rep	three_prime_UTR	2083124	2083349	.	+	.	Parent=Os07t0139400-02
Chr07	irgsp1_rep	mRNA	2081543	2083358	.	+	.	ID=Os07t0139400-03;Name=Os07t0139400-03;Locus_id=Os07g0139400;Note=Similar to UDP-D-xylose epimerase 1.;Transcript_evidence=AK059685 (DDBJ%2C Best hit);ORF_evidence=Q2LC83 (UniProt);GO=Biological Process: galactose metabolic process (GO:0006012),Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: UDP-glucose 4-epimerase activity (GO:0003978),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),UDP-glucose 4-epimerase (IPR005886),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-032-A06;Expression=AK059685;TENOR=Os07t0139400-03;KEGG=Os07t0139400-03 (EC:5.1.3.5)
Chr07	irgsp1_rep	CDS	2081543	2081632	.	+	0	Parent=Os07t0139400-03
Chr07	irgsp1_rep	CDS	2081762	2081853	.	+	0	Parent=Os07t0139400-03
Chr07	irgsp1_rep	CDS	2081927	2082068	.	+	1	Parent=Os07t0139400-03
Chr07	irgsp1_rep	CDS	2082145	2082245	.	+	0	Parent=Os07t0139400-03
Chr07	irgsp1_rep	CDS	2082338	2082467	.	+	1	Parent=Os07t0139400-03
Chr07	irgsp1_rep	CDS	2082623	2082767	.	+	0	Parent=Os07t0139400-03
Chr07	irgsp1_rep	CDS	2082882	2083123	.	+	2	Parent=Os07t0139400-03
Chr07	irgsp1_rep	three_prime_UTR	2083124	2083358	.	+	.	Parent=Os07t0139400-03
Chr07	irgsp1_rep	mRNA	2084109	2091650	.	-	.	ID=Os07t0139500-01;Name=Os07t0139500-01;Locus_id=Os07g0139500;Oryzabase Gene Symbol Synonym(s)=BIP133;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 133%2C BRI1-interacting protein 133%2C brassinosteroid receptor kinase-interacting protein 133;Note=Conserved hypothetical protein.;Transcript_evidence=AK065452 (DDBJ%2C Best hit);ORF_evidence=A2YI13 (UniProt);NIAS_FLcDNA=J013025M19;Oryzabase=13689;TENOR=Os07t0139500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	2091474	2091650	.	-	.	Parent=Os07t0139500-01
Chr07	irgsp1_rep	CDS	2091092	2091473	.	-	0	Parent=Os07t0139500-01
Chr07	irgsp1_rep	CDS	2090989	2090999	.	-	2	Parent=Os07t0139500-01
Chr07	irgsp1_rep	three_prime_UTR	2090939	2090988	.	-	.	Parent=Os07t0139500-01
Chr07	irgsp1_rep	three_prime_UTR	2090055	2090437	.	-	.	Parent=Os07t0139500-01
Chr07	irgsp1_rep	three_prime_UTR	2088699	2088898	.	-	.	Parent=Os07t0139500-01
Chr07	irgsp1_rep	three_prime_UTR	2088133	2088300	.	-	.	Parent=Os07t0139500-01
Chr07	irgsp1_rep	three_prime_UTR	2087689	2088000	.	-	.	Parent=Os07t0139500-01
Chr07	irgsp1_rep	three_prime_UTR	2087074	2087232	.	-	.	Parent=Os07t0139500-01
Chr07	irgsp1_rep	three_prime_UTR	2086836	2086988	.	-	.	Parent=Os07t0139500-01
Chr07	irgsp1_rep	three_prime_UTR	2086549	2086728	.	-	.	Parent=Os07t0139500-01
Chr07	irgsp1_rep	three_prime_UTR	2086269	2086439	.	-	.	Parent=Os07t0139500-01
Chr07	irgsp1_rep	three_prime_UTR	2085752	2086171	.	-	.	Parent=Os07t0139500-01
Chr07	irgsp1_rep	three_prime_UTR	2085502	2085639	.	-	.	Parent=Os07t0139500-01
Chr07	irgsp1_rep	three_prime_UTR	2085250	2085375	.	-	.	Parent=Os07t0139500-01
Chr07	irgsp1_rep	three_prime_UTR	2085042	2085174	.	-	.	Parent=Os07t0139500-01
Chr07	irgsp1_rep	three_prime_UTR	2084862	2084961	.	-	.	Parent=Os07t0139500-01
Chr07	irgsp1_rep	three_prime_UTR	2084109	2084474	.	-	.	Parent=Os07t0139500-01
Chr07	irgsp1_rep	mRNA	2092778	2093696	.	-	.	ID=Os07t0139600-01;Name=Os07t0139600-01;Locus_id=Os07g0139600;Note=Non-protein coding transcript.;Transcript_evidence=AK103216 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J033122N15;TENOR=Os07t0139600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	exon	2093600	2093696	.	-	.	Parent=Os07t0139600-01
Chr07	irgsp1_rep	exon	2092778	2093046	.	-	.	Parent=Os07t0139600-01
Chr07	irgsp1_rep	mRNA	2094418	2095167	.	+	.	ID=Os07t0139700-00;Name=Os07t0139700-00;Locus_id=Os07g0139700;Note=Similar to nucleosome/Chromatin assembly factor 104.;Transcript_evidence=EU976876 (DDBJ);ORF_evidence=B4FZY9 (UniProt);InterPro=Histone-binding protein RBBP4 (IPR022052);TENOR=Os07t0139700-00;KEGG=Os07t0139700-00
Chr07	irgsp1_rep	CDS	2094418	2095083	.	+	0	Parent=Os07t0139700-00
Chr07	irgsp1_rep	three_prime_UTR	2095084	2095167	.	+	.	Parent=Os07t0139700-00
Chr07	irgsp1_rep	mRNA	2100194	2100823	.	-	.	ID=Os07t0140232-00;Name=Os07t0140232-00;Locus_id=Os07g0140232;Note=Similar to Thaumatin-like protein 1.;Transcript_evidence=BT086406 (DDBJ);ORF_evidence=NP_177640.1 (RefSeq);InterPro=Thaumatin%2C pathogenesis-related (IPR001938);TENOR=Os07t0140232-00;KEGG=Os07t0140232-00
Chr07	irgsp1_rep	CDS	2100194	2100823	.	-	0	Parent=Os07t0140232-00
Chr07	irgsp1_rep	mRNA	2114746	2116598	.	-	.	ID=Os07t0140566-00;Name=Os07t0140566-00;Locus_id=Os07g0140566;Note=Similar to hydrolase/ protein serine/threonine phosphatase.;Transcript_evidence=tplb0052b08 (Wheat FLcDNA);ORF_evidence=NP_192917.2 (RefSeq);TENOR=Os07t0140566-00
Chr07	irgsp1_rep	five_prime_UTR	2116385	2116598	.	-	.	Parent=Os07t0140566-00
Chr07	irgsp1_rep	CDS	2116371	2116384	.	-	0	Parent=Os07t0140566-00
Chr07	irgsp1_rep	CDS	2116000	2116255	.	-	1	Parent=Os07t0140566-00
Chr07	irgsp1_rep	CDS	2115903	2115923	.	-	0	Parent=Os07t0140566-00
Chr07	irgsp1_rep	three_prime_UTR	2115522	2115902	.	-	.	Parent=Os07t0140566-00
Chr07	irgsp1_rep	three_prime_UTR	2115142	2115453	.	-	.	Parent=Os07t0140566-00
Chr07	irgsp1_rep	three_prime_UTR	2114746	2114941	.	-	.	Parent=Os07t0140566-00
Chr07	irgsp1_rep	mRNA	2117854	2118368	.	-	.	ID=Os07t0140633-00;Name=Os07t0140633-00;Locus_id=Os07g0140633;Note=Hypothetical gene.;Transcript_evidence=CT836129 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os07t0140633-00;KEGG=Os07t0140633-00
Chr07	irgsp1_rep	CDS	2118096	2118368	.	-	0	Parent=Os07t0140633-00
Chr07	irgsp1_rep	three_prime_UTR	2117854	2118095	.	-	.	Parent=Os07t0140633-00
Chr07	irgsp1_rep	mRNA	2128467	2130049	.	-	.	ID=Os07t0141100-01;Name=Os07t0141100-01;Locus_id=Os07g0141100;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK106343 (DDBJ%2C Best hit);ORF_evidence=A2YI18 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-101-G11;Expression=AK106343;TENOR=Os07t0141100-01;KEGG=Os07t0141100-01
Chr07	irgsp1_rep	five_prime_UTR	2130025	2130049	.	-	.	Parent=Os07t0141100-01
Chr07	irgsp1_rep	CDS	2129964	2130024	.	-	0	Parent=Os07t0141100-01
Chr07	irgsp1_rep	CDS	2128550	2129832	.	-	2	Parent=Os07t0141100-01
Chr07	irgsp1_rep	three_prime_UTR	2128467	2128549	.	-	.	Parent=Os07t0141100-01
Chr07	irgsp1_rep	mRNA	2136881	2138335	.	-	.	ID=Os07t0141400-01;Name=Os07t0141400-01;Locus_id=Os07g0141400;CGSNL Gene Symbol=PSBP;CGSNL Gene Name=PHOTOSYSTEM II SUBUNIT;Oryzabase Gene Symbol Synonym(s)=PsbP%2C OsPsbP%2C psbP;Oryzabase Gene Name Synonym(s)=PSII subunit PsbP%2C photosystem II subunit PsbP%2C Chloroplast 23 KD polypeptide of photosystem II%2C Oxygen-evolving enhancer protein 2;Note=Similar to 23 kDa polypeptide of photosystem II.;Transcript_evidence=AK065248 (DDBJ%2C Best hit);ORF_evidence=O65103 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: oxygen evolving complex (GO:0009654),Cellular Component: extrinsic to membrane (GO:0019898),Molecular Function: calcium ion binding (GO:0005509);InterPro=Photosystem II PsbP%2C oxygen evolving complex (IPR002683),Twin-arginine translocation pathway%2C signal sequence (IPR006311),Mog1/PsbP%2C alpha/beta/alpha sandwich (IPR016123),Mog1/PsbP/DUF1795%2C alpha/beta/alpha sandwich (IPR016124);NIAS_FLcDNA=J013002J02;Oryzabase=9595;Expression=AK065248;TENOR=Os07t0141400-01;KEGG=Os07t0141400-01
Chr07	irgsp1_rep	five_prime_UTR	2138230	2138335	.	-	.	Parent=Os07t0141400-01
Chr07	irgsp1_rep	CDS	2137777	2138229	.	-	0	Parent=Os07t0141400-01
Chr07	irgsp1_rep	CDS	2137626	2137676	.	-	0	Parent=Os07t0141400-01
Chr07	irgsp1_rep	CDS	2137119	2137379	.	-	0	Parent=Os07t0141400-01
Chr07	irgsp1_rep	three_prime_UTR	2136881	2137118	.	-	.	Parent=Os07t0141400-01
Chr07	irgsp1_rep	mRNA	2136871	2138294	.	-	.	ID=Os07t0141400-02;Name=Os07t0141400-02;Locus_id=Os07g0141400;CGSNL Gene Symbol=PSBP;CGSNL Gene Name=PHOTOSYSTEM II SUBUNIT;Oryzabase Gene Symbol Synonym(s)=PsbP%2C OsPsbP%2C psbP;Oryzabase Gene Name Synonym(s)=PSII subunit PsbP%2C photosystem II subunit PsbP%2C Chloroplast 23 KD polypeptide of photosystem II%2C Oxygen-evolving enhancer protein 2;Note=Similar to 23 kDa polypeptide of photosystem II.;Transcript_evidence=AK104722 (DDBJ%2C Best hit);ORF_evidence=O65103 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: oxygen evolving complex (GO:0009654),Cellular Component: extrinsic to membrane (GO:0019898),Molecular Function: calcium ion binding (GO:0005509);InterPro=Photosystem II PsbP%2C oxygen evolving complex (IPR002683),Twin-arginine translocation pathway%2C signal sequence (IPR006311),Mog1/PsbP%2C alpha/beta/alpha sandwich (IPR016123),Mog1/PsbP/DUF1795%2C alpha/beta/alpha sandwich (IPR016124);NIAS_FLcDNA=001-038-B02;Oryzabase=9595;TENOR=Os07t0141400-02
Chr07	irgsp1_rep	five_prime_UTR	2138230	2138294	.	-	.	Parent=Os07t0141400-02
Chr07	irgsp1_rep	CDS	2137777	2138229	.	-	0	Parent=Os07t0141400-02
Chr07	irgsp1_rep	CDS	2137626	2137676	.	-	0	Parent=Os07t0141400-02
Chr07	irgsp1_rep	CDS	2137119	2137379	.	-	0	Parent=Os07t0141400-02
Chr07	irgsp1_rep	three_prime_UTR	2136871	2137118	.	-	.	Parent=Os07t0141400-02
Chr07	irgsp1_rep	mRNA	2139644	2140459	.	-	.	ID=Os07t0141450-00;Name=Os07t0141450-00;Locus_id=Os07g0141450;Note=Conserved hypothetical protein.;Transcript_evidence=AK375155 (DDBJ);ORF_evidence=B8B758 (UniProt);TENOR=Os07t0141450-00
Chr07	irgsp1_rep	CDS	2139644	2140459	.	-	0	Parent=Os07t0141450-00
Chr07	irgsp1_rep	mRNA	2140736	2143984	.	-	.	ID=Os07t0141500-01;Name=Os07t0141500-01;Locus_id=Os07g0141500;Note=Zinc finger%2C SWIM-type domain containing protein.;Transcript_evidence=AK068893 (DDBJ%2C Best hit);ORF_evidence=B8B758 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);NIAS_FLcDNA=J023001G24;Expression=AK068893;TENOR=Os07t0141500-01;KEGG=Os07t0141500-01
Chr07	irgsp1_rep	five_prime_UTR	2143763	2143984	.	-	.	Parent=Os07t0141500-01
Chr07	irgsp1_rep	five_prime_UTR	2143066	2143205	.	-	.	Parent=Os07t0141500-01
Chr07	irgsp1_rep	five_prime_UTR	2142016	2142980	.	-	.	Parent=Os07t0141500-01
Chr07	irgsp1_rep	CDS	2140951	2142015	.	-	0	Parent=Os07t0141500-01
Chr07	irgsp1_rep	three_prime_UTR	2140736	2140950	.	-	.	Parent=Os07t0141500-01
Chr07	irgsp1_rep	mRNA	2144184	2151799	.	+	.	ID=Os07t0141600-01;Name=Os07t0141600-01;Locus_id=Os07g0141600;Note=Similar to Serologically defined breast cancer antigen NY-BR-99.;Transcript_evidence=AK103156 (DDBJ%2C Best hit);ORF_evidence=A2Q2G1 (UniProt);InterPro=Pre-mRNA processing ribonucleoprotein%2C snoRNA-binding domain (IPR002687),NOSIC (IPR012976),Prp31 C-terminal (IPR019175);NIAS_FLcDNA=J033121A14;Expression=AK103156;TENOR=Os07t0141600-01;KEGG=Os07t0141600-01
Chr07	irgsp1_rep	five_prime_UTR	2144184	2144257	.	+	.	Parent=Os07t0141600-01
Chr07	irgsp1_rep	five_prime_UTR	2144852	2144891	.	+	.	Parent=Os07t0141600-01
Chr07	irgsp1_rep	CDS	2144892	2144894	.	+	0	Parent=Os07t0141600-01
Chr07	irgsp1_rep	CDS	2145021	2145083	.	+	0	Parent=Os07t0141600-01
Chr07	irgsp1_rep	CDS	2145171	2145308	.	+	0	Parent=Os07t0141600-01
Chr07	irgsp1_rep	CDS	2145734	2146626	.	+	0	Parent=Os07t0141600-01
Chr07	irgsp1_rep	CDS	2146783	2146853	.	+	1	Parent=Os07t0141600-01
Chr07	irgsp1_rep	CDS	2146980	2147082	.	+	2	Parent=Os07t0141600-01
Chr07	irgsp1_rep	CDS	2147865	2147940	.	+	1	Parent=Os07t0141600-01
Chr07	irgsp1_rep	CDS	2148718	2148825	.	+	0	Parent=Os07t0141600-01
Chr07	irgsp1_rep	three_prime_UTR	2148826	2148876	.	+	.	Parent=Os07t0141600-01
Chr07	irgsp1_rep	three_prime_UTR	2149447	2151799	.	+	.	Parent=Os07t0141600-01
Chr07	irgsp1_rep	mRNA	2148712	2148906	.	-	.	ID=Os07t0141650-00;Name=Os07t0141650-00;Locus_id=Os07g0141650;Note=Non-protein coding transcript.;Transcript_evidence=BT016977 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0141650-00
Chr07	irgsp1_rep	exon	2148712	2148906	.	-	.	Parent=Os07t0141650-00
Chr07	irgsp1_rep	mRNA	2149575	2152124	.	-	.	ID=Os07t0141700-00;Name=Os07t0141700-00;Locus_id=Os07g0141700;Note=NB-ARC domain containing protein.;Transcript_evidence=AK369881 (DDBJ);ORF_evidence=NP_001058866.1 (RefSeq);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os07t0141700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	2149575	2152124	.	-	0	Parent=Os07t0141700-00
Chr07	irgsp1_rep	mRNA	2162644	2167146	.	-	.	ID=Os07t0141900-00;Name=Os07t0141900-00;Locus_id=Os07g0141900;Note=Similar to OSIGBa0148A10.13 protein.;Transcript_evidence=tplb0054c18 (Wheat FLcDNA);ORF_evidence=Q01K85 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182),ATPase%2C AAA+ type%2C core (IPR003593);TENOR=Os07t0141900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	2167123	2167146	.	-	.	Parent=Os07t0141900-00
Chr07	irgsp1_rep	CDS	2162644	2167122	.	-	0	Parent=Os07t0141900-00
Chr07	irgsp1_rep	mRNA	2170647	2172805	.	+	.	ID=Os07t0142000-01;Name=Os07t0142000-01;Locus_id=Os07g0142000;Note=Reticulon family protein.;Transcript_evidence=AK099414 (DDBJ%2C Best hit),AK059877 (DDBJ%2C Best hit);ORF_evidence=B6T4A9 (UniProt);GO=Cellular Component: endoplasmic reticulum (GO:0005783);InterPro=Reticulon (IPR003388);NIAS_FLcDNA=J013005I15,006-207-G01;Expression=AK099414;TENOR=Os07t0142000-01;KEGG=Os07t0142000-01
Chr07	irgsp1_rep	five_prime_UTR	2170647	2170781	.	+	.	Parent=Os07t0142000-01
Chr07	irgsp1_rep	five_prime_UTR	2171434	2171444	.	+	.	Parent=Os07t0142000-01
Chr07	irgsp1_rep	CDS	2171445	2171622	.	+	0	Parent=Os07t0142000-01
Chr07	irgsp1_rep	CDS	2171734	2171914	.	+	2	Parent=Os07t0142000-01
Chr07	irgsp1_rep	CDS	2171989	2172130	.	+	1	Parent=Os07t0142000-01
Chr07	irgsp1_rep	CDS	2172219	2172288	.	+	0	Parent=Os07t0142000-01
Chr07	irgsp1_rep	CDS	2172394	2172563	.	+	2	Parent=Os07t0142000-01
Chr07	irgsp1_rep	three_prime_UTR	2172564	2172805	.	+	.	Parent=Os07t0142000-01
Chr07	irgsp1_rep	mRNA	2171775	2172572	.	-	.	ID=Os07t0142050-00;Name=Os07t0142050-00;Locus_id=Os07g0142050;Note=Non-protein coding transcript.;Transcript_evidence=BT019310 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0142050-00
Chr07	irgsp1_rep	exon	2172331	2172572	.	-	.	Parent=Os07t0142050-00
Chr07	irgsp1_rep	exon	2171994	2172124	.	-	.	Parent=Os07t0142050-00
Chr07	irgsp1_rep	exon	2171775	2171923	.	-	.	Parent=Os07t0142050-00
Chr07	irgsp1_rep	mRNA	2175193	2175719	.	+	.	ID=Os07t0142100-00;Name=Os07t0142100-00;Locus_id=Os07g0142100;Note=Conserved hypothetical protein.;Transcript_evidence=CT836140 (DDBJ%2C Best hit);ORF_evidence=Q8H4K5 (UniProt);TENOR=Os07t0142100-00;KEGG=Os07t0142100-00
Chr07	irgsp1_rep	CDS	2175193	2175411	.	+	0	Parent=Os07t0142100-00
Chr07	irgsp1_rep	three_prime_UTR	2175412	2175719	.	+	.	Parent=Os07t0142100-00
Chr07	irgsp1_rep	mRNA	2176824	2177640	.	+	.	ID=Os07t0142200-01;Name=Os07t0142200-01;Locus_id=Os07g0142200;Oryzabase Gene Symbol Synonym(s)=gp1;Oryzabase Gene Name Synonym(s)=Glycoprotein 1%2C vegetative cell wall protein gp1 precursor;Note=Conserved hypothetical protein.;Transcript_evidence=AK108897 (DDBJ%2C Best hit);ORF_evidence=A3BGH3 (UniProt);NIAS_FLcDNA=002-152-F01;Oryzabase=10205;Expression=AK108897;TENOR=Os07t0142200-01;KEGG=Os07t0142200-01
Chr07	irgsp1_rep	five_prime_UTR	2176824	2176892	.	+	.	Parent=Os07t0142200-01
Chr07	irgsp1_rep	CDS	2176893	2177402	.	+	0	Parent=Os07t0142200-01
Chr07	irgsp1_rep	three_prime_UTR	2177403	2177640	.	+	.	Parent=Os07t0142200-01
Chr07	irgsp1_rep	mRNA	2179636	2180493	.	+	.	ID=Os07t0142300-01;Name=Os07t0142300-01;Locus_id=Os07g0142300;Note=Similar to Mucin-2.;Transcript_evidence=AK108823 (DDBJ%2C Best hit);ORF_evidence=B6SR31 (UniProt);NIAS_FLcDNA=002-151-F04;Expression=AK108823;TENOR=Os07t0142300-01;KEGG=Os07t0142300-01
Chr07	irgsp1_rep	five_prime_UTR	2179636	2179696	.	+	.	Parent=Os07t0142300-01
Chr07	irgsp1_rep	CDS	2179697	2180269	.	+	0	Parent=Os07t0142300-01
Chr07	irgsp1_rep	three_prime_UTR	2180270	2180493	.	+	.	Parent=Os07t0142300-01
Chr07	irgsp1_rep	mRNA	2181829	2182635	.	+	.	ID=Os07t0142500-00;Name=Os07t0142500-00;Locus_id=Os07g0142500;Note=Conserved hypothetical protein.;Transcript_evidence=CU405778 (DDBJ%2C Best hit);ORF_evidence=NP_001058871.1 (RefSeq);TENOR=Os07t0142500-00;KEGG=Os07t0142500-00
Chr07	irgsp1_rep	five_prime_UTR	2181829	2181897	.	+	.	Parent=Os07t0142500-00
Chr07	irgsp1_rep	CDS	2181898	2182404	.	+	0	Parent=Os07t0142500-00
Chr07	irgsp1_rep	three_prime_UTR	2182405	2182635	.	+	.	Parent=Os07t0142500-00
Chr07	irgsp1_rep	mRNA	2184250	2184996	.	+	.	ID=Os07t0142600-01;Name=Os07t0142600-01;Locus_id=Os07g0142600;Note=Similar to Vegetative cell wall protein gp1.;Transcript_evidence=AK062842 (DDBJ%2C Best hit);ORF_evidence=B6SY74 (UniProt);NIAS_FLcDNA=001-107-H06;Expression=AK062842;TENOR=Os07t0142600-01;KEGG=Os07t0142600-01
Chr07	irgsp1_rep	five_prime_UTR	2184250	2184345	.	+	.	Parent=Os07t0142600-01
Chr07	irgsp1_rep	CDS	2184346	2184801	.	+	0	Parent=Os07t0142600-01
Chr07	irgsp1_rep	three_prime_UTR	2184802	2184996	.	+	.	Parent=Os07t0142600-01
Chr07	irgsp1_rep	mRNA	2187512	2188973	.	-	.	ID=Os07t0142700-00;Name=Os07t0142700-00;Locus_id=Os07g0142700;Note=Transferase family protein.;Transcript_evidence=AK365069 (DDBJ);ORF_evidence=NP_001058873.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os07t0142700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	2188940	2188973	.	-	.	Parent=Os07t0142700-00
Chr07	irgsp1_rep	CDS	2187512	2188939	.	-	0	Parent=Os07t0142700-00
Chr07	irgsp1_rep	mRNA	2190971	2193208	.	-	.	ID=Os07t0142802-00;Name=Os07t0142802-00;Locus_id=Os07g0142802;Note=Hypothetical protein.;Transcript_evidence=tplb0022f07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0142802-00
Chr07	irgsp1_rep	five_prime_UTR	2193158	2193208	.	-	.	Parent=Os07t0142802-00
Chr07	irgsp1_rep	CDS	2192904	2193157	.	-	0	Parent=Os07t0142802-00
Chr07	irgsp1_rep	CDS	2192438	2192459	.	-	1	Parent=Os07t0142802-00
Chr07	irgsp1_rep	three_prime_UTR	2192269	2192437	.	-	.	Parent=Os07t0142802-00
Chr07	irgsp1_rep	three_prime_UTR	2190971	2191445	.	-	.	Parent=Os07t0142802-00
Chr07	irgsp1_rep	mRNA	2193809	2196930	.	+	.	ID=Os07t0142900-01;Name=Os07t0142900-01;Locus_id=Os07g0142900;Note=Aldo/keto reductase family protein.;Transcript_evidence=AK060737 (DDBJ%2C Best hit),AK064848 (DDBJ%2C Best hit);ORF_evidence=NP_001149144.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldo/keto reductase (IPR001395),Aldo/keto reductase%2C conserved site (IPR018170),NADP-dependent oxidoreductase domain (IPR023210);NIAS_FLcDNA=001-032-C07,J013000G23;TENOR=Os07t0142900-01
Chr07	irgsp1_rep	five_prime_UTR	2193809	2193857	.	+	.	Parent=Os07t0142900-01
Chr07	irgsp1_rep	CDS	2193858	2194104	.	+	0	Parent=Os07t0142900-01
Chr07	irgsp1_rep	CDS	2194804	2194895	.	+	2	Parent=Os07t0142900-01
Chr07	irgsp1_rep	CDS	2194991	2195028	.	+	0	Parent=Os07t0142900-01
Chr07	irgsp1_rep	CDS	2195137	2195298	.	+	1	Parent=Os07t0142900-01
Chr07	irgsp1_rep	CDS	2195388	2195410	.	+	1	Parent=Os07t0142900-01
Chr07	irgsp1_rep	CDS	2195521	2195592	.	+	2	Parent=Os07t0142900-01
Chr07	irgsp1_rep	CDS	2195706	2195873	.	+	2	Parent=Os07t0142900-01
Chr07	irgsp1_rep	CDS	2196166	2196248	.	+	2	Parent=Os07t0142900-01
Chr07	irgsp1_rep	CDS	2196381	2196443	.	+	0	Parent=Os07t0142900-01
Chr07	irgsp1_rep	CDS	2196583	2196765	.	+	0	Parent=Os07t0142900-01
Chr07	irgsp1_rep	three_prime_UTR	2196766	2196930	.	+	.	Parent=Os07t0142900-01
Chr07	irgsp1_rep	mRNA	2197573	2201392	.	+	.	ID=Os07t0143000-01;Name=Os07t0143000-01;Locus_id=Os07g0143000;CGSNL Gene Symbol=PLR1;CGSNL Gene Name=PYRIDOXAL REDUCTASE 1;Oryzabase Gene Symbol Synonym(s)=OsPLR1;Oryzabase Gene Name Synonym(s)=pyridoxal reductase 1;Note=Aldo/keto reductase family protein.;Transcript_evidence=AK067910 (DDBJ%2C Best hit);ORF_evidence=E9JVD8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldo/keto reductase (IPR001395),Aldo/keto reductase%2C conserved site (IPR018170),NADP-dependent oxidoreductase domain (IPR023210);NIAS_FLcDNA=J013124N22;Oryzabase=23101;Expression=AK067910;TENOR=Os07t0143000-01;KEGG=Os07t0143000-01
Chr07	irgsp1_rep	five_prime_UTR	2197573	2197738	.	+	.	Parent=Os07t0143000-01
Chr07	irgsp1_rep	CDS	2197739	2197985	.	+	0	Parent=Os07t0143000-01
Chr07	irgsp1_rep	CDS	2198990	2199081	.	+	2	Parent=Os07t0143000-01
Chr07	irgsp1_rep	CDS	2199175	2199212	.	+	0	Parent=Os07t0143000-01
Chr07	irgsp1_rep	CDS	2199296	2199457	.	+	1	Parent=Os07t0143000-01
Chr07	irgsp1_rep	CDS	2199543	2199565	.	+	1	Parent=Os07t0143000-01
Chr07	irgsp1_rep	CDS	2199874	2199945	.	+	2	Parent=Os07t0143000-01
Chr07	irgsp1_rep	CDS	2200051	2200218	.	+	2	Parent=Os07t0143000-01
Chr07	irgsp1_rep	CDS	2200429	2200511	.	+	2	Parent=Os07t0143000-01
Chr07	irgsp1_rep	CDS	2200623	2200685	.	+	0	Parent=Os07t0143000-01
Chr07	irgsp1_rep	CDS	2200967	2201152	.	+	0	Parent=Os07t0143000-01
Chr07	irgsp1_rep	three_prime_UTR	2201153	2201392	.	+	.	Parent=Os07t0143000-01
Chr07	irgsp1_rep	mRNA	2207362	2209018	.	+	.	ID=Os07t0143200-01;Name=Os07t0143200-01;Locus_id=Os07g0143200;RAP-DB Gene Symbol Synonym(s)=OsPIF14%2C OsPIF14&alpha%3B%2C OsPIF14a%2C OsPIL14%2C PIL14;RAP-DB Gene Name Synonym(s)=PhytoChrome Interacting Factor 3-Like 14%2C PhytoChrome-Interacting bHLH Factor 14%2C phytoChrome-interacting factor 14;CGSNL Gene Symbol=PIL14;Oryzabase Gene Symbol Synonym(s)=OsPIL14%2C OsbHLH104%2C OsPIF14%2C PIF14%2C OsPIF14alpha%2C OsPIF14beta;Oryzabase Gene Name Synonym(s)=PHYTOCHROME INTERACTING FACTOR-LIKE 14%2C PhytoChrome Interacting factor 3-Like 14%2C basic helix-loop-helix protein 104%2C phytoChrome-interacting factor 14;Note=PhytoChrome-interacting bHLH factor%2C Cross-talk between light and stress signaling;Transcript_evidence=JN400276;ORF_evidence=K4F270;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);Manual Curation=June 2%2C 2017;Literature_PMID=26732823;Oryzabase=14336;TENOR=Os07t0143200-00;KEGG=Os07t0143200-00
Chr07	irgsp1_rep	CDS	2207362	2208066	.	+	0	Parent=Os07t0143200-01
Chr07	irgsp1_rep	CDS	2208169	2208234	.	+	0	Parent=Os07t0143200-01
Chr07	irgsp1_rep	CDS	2208355	2208420	.	+	0	Parent=Os07t0143200-01
Chr07	irgsp1_rep	CDS	2208529	2208828	.	+	0	Parent=Os07t0143200-01
Chr07	irgsp1_rep	CDS	2208911	2209018	.	+	0	Parent=Os07t0143200-01
Chr07	irgsp1_rep	mRNA	2207362	2209018	.	+	.	ID=Os07t0143200-02;Name=Os07t0143200-02;Locus_id=Os07g0143200;RAP-DB Gene Symbol Synonym(s)=OsPIF14%2C OsPIF14&beta%3B%2C OsPIF14b%2C PIL14;CGSNL Gene Symbol=PIL14;Oryzabase Gene Symbol Synonym(s)=OsPIL14%2C OsbHLH104%2C OsPIF14%2C PIF14%2C OsPIF14alpha%2C OsPIF14beta;Oryzabase Gene Name Synonym(s)=PHYTOCHROME INTERACTING FACTOR-LIKE 14%2C PhytoChrome Interacting factor 3-Like 14%2C basic helix-loop-helix protein 104%2C phytoChrome-interacting factor 14;Note=Cold-induced alternative splicing variant of OsPIF14;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;Manual Curation=June 2%2C 2017;Literature_PMID=26732823;Oryzabase=14336
Chr07	irgsp1_rep	CDS	2207362	2208105	.	+	0	Parent=Os07t0143200-02
Chr07	irgsp1_rep	three_prime_UTR	2208106	2208234	.	+	.	Parent=Os07t0143200-02
Chr07	irgsp1_rep	three_prime_UTR	2208355	2208420	.	+	.	Parent=Os07t0143200-02
Chr07	irgsp1_rep	three_prime_UTR	2208529	2208828	.	+	.	Parent=Os07t0143200-02
Chr07	irgsp1_rep	three_prime_UTR	2208911	2209018	.	+	.	Parent=Os07t0143200-02
Chr07	irgsp1_rep	mRNA	2212152	2213086	.	-	.	ID=Os07t0143401-00;Name=Os07t0143401-00;Locus_id=Os07g0143401;Note=Hypothetical gene.;Transcript_evidence=CT836171 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os07t0143401-00;KEGG=Os07t0143401-00
Chr07	irgsp1_rep	five_prime_UTR	2212951	2213086	.	-	.	Parent=Os07t0143401-00
Chr07	irgsp1_rep	CDS	2212924	2212950	.	-	0	Parent=Os07t0143401-00
Chr07	irgsp1_rep	CDS	2212581	2212830	.	-	0	Parent=Os07t0143401-00
Chr07	irgsp1_rep	CDS	2212186	2212493	.	-	2	Parent=Os07t0143401-00
Chr07	irgsp1_rep	three_prime_UTR	2212152	2212185	.	-	.	Parent=Os07t0143401-00
Chr07	irgsp1_rep	mRNA	2215711	2217178	.	-	.	ID=Os07t0143500-01;Name=Os07t0143500-01;Locus_id=Os07g0143500;Note=Non-protein coding transcript.;Transcript_evidence=AK064714 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-118-D03;TENOR=Os07t0143500-01
Chr07	irgsp1_rep	exon	2215711	2217178	.	-	.	Parent=Os07t0143500-01
Chr07	irgsp1_rep	mRNA	2222974	2224906	.	-	.	ID=Os07t0143600-01;Name=Os07t0143600-01;Locus_id=Os07g0143600;Note=Hypothetical conserved gene.;Transcript_evidence=AK241402 (DDBJ%2C Best hit);ORF_evidence=Q8H5E1 (UniProt);NIAS_FLcDNA=J065159A02;TENOR=Os07t0143600-01;KEGG=Os07t0143600-01
Chr07	irgsp1_rep	five_prime_UTR	2224905	2224906	.	-	.	Parent=Os07t0143600-01
Chr07	irgsp1_rep	CDS	2224734	2224904	.	-	0	Parent=Os07t0143600-01
Chr07	irgsp1_rep	CDS	2224354	2224627	.	-	0	Parent=Os07t0143600-01
Chr07	irgsp1_rep	CDS	2223190	2223452	.	-	2	Parent=Os07t0143600-01
Chr07	irgsp1_rep	three_prime_UTR	2222974	2223189	.	-	.	Parent=Os07t0143600-01
Chr07	irgsp1_rep	mRNA	2225652	2231090	.	-	.	ID=Os07t0143700-01;Name=Os07t0143700-01;Locus_id=Os07g0143700;Oryzabase Gene Symbol Synonym(s)=OsRH53;Oryzabase Gene Name Synonym(s)=RNA helicase 53;Note=Similar to DEAD-Box RNA helicase-like protein.;Transcript_evidence=AK068871 (DDBJ%2C Best hit);ORF_evidence=NP_001147777.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=J013169B18;Oryzabase=19161;Expression=AK068871;TENOR=Os07t0143700-01;KEGG=Os07t0143700-01 (EC:3.6.4.13)
Chr07	irgsp1_rep	five_prime_UTR	2231089	2231090	.	-	.	Parent=Os07t0143700-01
Chr07	irgsp1_rep	CDS	2230759	2231088	.	-	0	Parent=Os07t0143700-01
Chr07	irgsp1_rep	CDS	2228071	2228198	.	-	0	Parent=Os07t0143700-01
Chr07	irgsp1_rep	CDS	2227571	2227979	.	-	1	Parent=Os07t0143700-01
Chr07	irgsp1_rep	CDS	2227020	2227142	.	-	0	Parent=Os07t0143700-01
Chr07	irgsp1_rep	three_prime_UTR	2226744	2227019	.	-	.	Parent=Os07t0143700-01
Chr07	irgsp1_rep	three_prime_UTR	2226468	2226629	.	-	.	Parent=Os07t0143700-01
Chr07	irgsp1_rep	three_prime_UTR	2225652	2226367	.	-	.	Parent=Os07t0143700-01
Chr07	irgsp1_rep	mRNA	2226468	2230876	.	+	.	ID=Os07t0143800-00;Name=Os07t0143800-00;Locus_id=Os07g0143800;Note=Hypothetical protein.;Transcript_evidence=BT086170 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0143800-00
Chr07	irgsp1_rep	five_prime_UTR	2226468	2226622	.	+	.	Parent=Os07t0143800-00
Chr07	irgsp1_rep	five_prime_UTR	2226735	2227000	.	+	.	Parent=Os07t0143800-00
Chr07	irgsp1_rep	five_prime_UTR	2227508	2227982	.	+	.	Parent=Os07t0143800-00
Chr07	irgsp1_rep	five_prime_UTR	2228074	2228103	.	+	.	Parent=Os07t0143800-00
Chr07	irgsp1_rep	CDS	2228104	2228198	.	+	0	Parent=Os07t0143800-00
Chr07	irgsp1_rep	CDS	2230759	2230876	.	+	1	Parent=Os07t0143800-00
Chr07	irgsp1_rep	mRNA	2231961	2234430	.	-	.	ID=Os07t0143900-01;Name=Os07t0143900-01;Locus_id=Os07g0143900;Note=Conserved hypothetical protein.;Transcript_evidence=AK064739 (DDBJ%2C Best hit);ORF_evidence=A2YI41 (UniProt);NIAS_FLcDNA=002-120-D04;Expression=AK064739;TENOR=Os07t0143900-01;KEGG=Os07t0143900-01
Chr07	irgsp1_rep	five_prime_UTR	2234143	2234430	.	-	.	Parent=Os07t0143900-01
Chr07	irgsp1_rep	CDS	2233367	2234142	.	-	0	Parent=Os07t0143900-01
Chr07	irgsp1_rep	CDS	2232204	2232498	.	-	1	Parent=Os07t0143900-01
Chr07	irgsp1_rep	three_prime_UTR	2231961	2232203	.	-	.	Parent=Os07t0143900-01
Chr07	irgsp1_rep	mRNA	2257336	2258974	.	+	.	ID=Os07t0144500-00;Name=Os07t0144500-00;Locus_id=Os07g0144500;Oryzabase Gene Symbol Synonym(s)=OspPLAIIIepsilon%2C pPLAIIIepsilon;Oryzabase Gene Name Synonym(s)=Patatin-related phospholipase A III epsilon;Note=Similar to Patatin-like phospholipase family protein%2C expressed.;Transcript_evidence=AK367891 (DDBJ);ORF_evidence=Q2QMB1 (UniProt);GO=Biological Process: metabolic process (GO:0008152);InterPro=Acyl transferase/acyl hydrolase/lysophospholipase (IPR016035);Oryzabase=19875;TENOR=Os07t0144500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	2257336	2258292	.	+	0	Parent=Os07t0144500-00
Chr07	irgsp1_rep	CDS	2258536	2258598	.	+	0	Parent=Os07t0144500-00
Chr07	irgsp1_rep	CDS	2258744	2258974	.	+	0	Parent=Os07t0144500-00
Chr07	irgsp1_rep	mRNA	2274921	2276505	.	+	.	ID=Os07t0144732-00;Name=Os07t0144732-00;Locus_id=Os07g0144732;Note=Conserved hypothetical protein.;Transcript_evidence=CT836058 (DDBJ%2C Best hit);ORF_evidence=B9FVG7 (UniProt);TENOR=Os07t0144732-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	2274921	2275059	.	+	.	Parent=Os07t0144732-00
Chr07	irgsp1_rep	five_prime_UTR	2275721	2275725	.	+	.	Parent=Os07t0144732-00
Chr07	irgsp1_rep	CDS	2275726	2275877	.	+	0	Parent=Os07t0144732-00
Chr07	irgsp1_rep	CDS	2276152	2276272	.	+	1	Parent=Os07t0144732-00
Chr07	irgsp1_rep	three_prime_UTR	2276273	2276505	.	+	.	Parent=Os07t0144732-00
Chr07	irgsp1_rep	mRNA	2287216	2287491	.	+	.	ID=Os07t0144900-01;Name=Os07t0144900-01;Locus_id=Os07g0144900;Oryzabase Gene Symbol Synonym(s)=OSK16;Oryzabase Gene Name Synonym(s)=S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 16%2C Oryza sativa SKP1-like gene 16;Note=Similar to ASK11 (ARABIDOPSIS SKP1-LIKE 11)%3B ubiquitin-protein ligase.;Transcript_evidence=AK242552 (DDBJ%2C Best hit);ORF_evidence=NP_567959.1 (RefSeq);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);InterPro=SKP1 component (IPR001232),BTB/POZ fold (IPR011333),SKP1 component%2C dimerisation (IPR016072);NIAS_FLcDNA=J080319E03;Oryzabase=18447;TENOR=Os07t0144900-01;KEGG=Os07t0144900-01
Chr07	irgsp1_rep	CDS	2287216	2287380	.	+	0	Parent=Os07t0144900-01
Chr07	irgsp1_rep	three_prime_UTR	2287381	2287491	.	+	.	Parent=Os07t0144900-01
Chr07	irgsp1_rep	mRNA	2306730	2307397	.	+	.	ID=Os07t0145250-01;Name=Os07t0145250-01;Locus_id=Os07g0145250;Note=Conserved hypothetical protein.;Transcript_evidence=AK242183 (DDBJ%2C Best hit);ORF_evidence=NP_001175054.1 (RefSeq);NIAS_FLcDNA=J075161C12;TENOR=Os07t0145250-01;KEGG=Os07t0145250-01
Chr07	irgsp1_rep	five_prime_UTR	2306730	2306866	.	+	.	Parent=Os07t0145250-01
Chr07	irgsp1_rep	CDS	2306867	2307193	.	+	0	Parent=Os07t0145250-01
Chr07	irgsp1_rep	three_prime_UTR	2307194	2307397	.	+	.	Parent=Os07t0145250-01
Chr07	irgsp1_rep	mRNA	2313447	2318963	.	-	.	ID=Os07t0145400-01;Name=Os07t0145400-01;Locus_id=Os07g0145400;CGSNL Gene Symbol=GHR1;CGSNL Gene Name=GUARD CELL HYDROGEN PEROXIDE-RESISTANT 1;Oryzabase Gene Symbol Synonym(s)=OsGHR1;Oryzabase Gene Name Synonym(s)=Guard cell Hydrogen peroxide-Resistant1;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK103262 (DDBJ%2C Best hit);ORF_evidence=B8B7A7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J033124E23;Oryzabase=23711;Expression=AK103262;TENOR=Os07t0145400-01;KEGG=Os07t0145400-01
Chr07	irgsp1_rep	five_prime_UTR	2318727	2318963	.	-	.	Parent=Os07t0145400-01
Chr07	irgsp1_rep	five_prime_UTR	2318128	2318344	.	-	.	Parent=Os07t0145400-01
Chr07	irgsp1_rep	CDS	2317062	2318127	.	-	0	Parent=Os07t0145400-01
Chr07	irgsp1_rep	CDS	2314563	2316110	.	-	2	Parent=Os07t0145400-01
Chr07	irgsp1_rep	CDS	2313828	2314411	.	-	2	Parent=Os07t0145400-01
Chr07	irgsp1_rep	three_prime_UTR	2313447	2313827	.	-	.	Parent=Os07t0145400-01
Chr07	irgsp1_rep	mRNA	2313831	2314848	.	+	.	ID=Os07t0145500-00;Name=Os07t0145500-00;Locus_id=Os07g0145500;Note=Hypothetical protein.;Transcript_evidence=BT017590 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0145500-00
Chr07	irgsp1_rep	five_prime_UTR	2313831	2313888	.	+	.	Parent=Os07t0145500-00
Chr07	irgsp1_rep	CDS	2313889	2314170	.	+	0	Parent=Os07t0145500-00
Chr07	irgsp1_rep	three_prime_UTR	2314171	2314472	.	+	.	Parent=Os07t0145500-00
Chr07	irgsp1_rep	three_prime_UTR	2314615	2314848	.	+	.	Parent=Os07t0145500-00
Chr07	irgsp1_rep	mRNA	2338784	2339182	.	-	.	ID=Os07t0145800-00;Name=Os07t0145800-00;Locus_id=Os07g0145800;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3BGJ4 (UniProt);TENOR=Os07t0145800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	2338784	2339182	.	-	0	Parent=Os07t0145800-00
Chr07	irgsp1_rep	mRNA	2369190	2370650	.	+	.	ID=Os07t0146300-01;Name=Os07t0146300-01;Locus_id=Os07g0146300;Note=Conserved hypothetical protein.;Transcript_evidence=AK242479 (DDBJ%2C Best hit);ORF_evidence=NP_001175055.1 (RefSeq);NIAS_FLcDNA=J080304J04;TENOR=Os07t0146300-01;KEGG=Os07t0146300-01
Chr07	irgsp1_rep	five_prime_UTR	2369190	2369255	.	+	.	Parent=Os07t0146300-01
Chr07	irgsp1_rep	CDS	2369256	2369351	.	+	0	Parent=Os07t0146300-01
Chr07	irgsp1_rep	CDS	2370132	2370178	.	+	0	Parent=Os07t0146300-01
Chr07	irgsp1_rep	CDS	2370309	2370441	.	+	1	Parent=Os07t0146300-01
Chr07	irgsp1_rep	three_prime_UTR	2370442	2370650	.	+	.	Parent=Os07t0146300-01
Chr07	irgsp1_rep	mRNA	2389707	2390872	.	+	.	ID=Os07t0146700-01;Name=Os07t0146700-01;Locus_id=Os07g0146700;Note=Hypothetical protein.;Transcript_evidence=AK063631 (DDBJ%2C Best hit),AK101150 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=001-118-F09,J033027C02;TENOR=Os07t0146700-01
Chr07	irgsp1_rep	five_prime_UTR	2389707	2389800	.	+	.	Parent=Os07t0146700-01
Chr07	irgsp1_rep	CDS	2389801	2389896	.	+	0	Parent=Os07t0146700-01
Chr07	irgsp1_rep	CDS	2390329	2390396	.	+	0	Parent=Os07t0146700-01
Chr07	irgsp1_rep	CDS	2390510	2390615	.	+	1	Parent=Os07t0146700-01
Chr07	irgsp1_rep	three_prime_UTR	2390616	2390872	.	+	.	Parent=Os07t0146700-01
Chr07	irgsp1_rep	mRNA	2400237	2400969	.	+	.	ID=Os07t0146800-01;Name=Os07t0146800-01;Locus_id=Os07g0146800;Note=Non-protein coding transcript.;Transcript_evidence=AK106695 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-114-D02;TENOR=Os07t0146800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	exon	2400237	2400419	.	+	.	Parent=Os07t0146800-01
Chr07	irgsp1_rep	exon	2400522	2400581	.	+	.	Parent=Os07t0146800-01
Chr07	irgsp1_rep	exon	2400676	2400969	.	+	.	Parent=Os07t0146800-01
Chr07	irgsp1_rep	mRNA	2454338	2455636	.	+	.	ID=Os07t0147500-01;Name=Os07t0147500-01;Locus_id=Os07g0147500;CGSNL Gene Symbol=PSBR;CGSNL Gene Name=PHOTOSYSTEM II SUBUNIT;Oryzabase Gene Symbol Synonym(s)=PsbR%2C OsPsbR1%2C PsbR1%2C OsPSBR;Oryzabase Gene Name Synonym(s)=PSII subunit PsbR%2C photosystem II subunit PsbR%2C PSII subunit PsbR1%2C photosystem II subunit PsbR1;Note=Similar to Photosystem II 10 kDa polypeptide%2C chloroplast precursor.;Transcript_evidence=AK062172 (DDBJ%2C Best hit),AK120691 (DDBJ%2C Best hit);ORF_evidence=Q40070 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: oxygen evolving complex (GO:0009654),Cellular Component: thylakoid membrane (GO:0042651);InterPro=Photosystem II PsbR (IPR006814);NIAS_FLcDNA=001-046-C07,J013169L11;Oryzabase=9596;Expression=AK062172;TENOR=Os07t0147500-01;KEGG=Os07t0147500-01
Chr07	irgsp1_rep	five_prime_UTR	2454338	2454403	.	+	.	Parent=Os07t0147500-01
Chr07	irgsp1_rep	CDS	2454404	2454557	.	+	0	Parent=Os07t0147500-01
Chr07	irgsp1_rep	CDS	2454784	2454842	.	+	2	Parent=Os07t0147500-01
Chr07	irgsp1_rep	CDS	2454929	2454984	.	+	0	Parent=Os07t0147500-01
Chr07	irgsp1_rep	CDS	2455228	2455280	.	+	1	Parent=Os07t0147500-01
Chr07	irgsp1_rep	CDS	2455405	2455496	.	+	2	Parent=Os07t0147500-01
Chr07	irgsp1_rep	three_prime_UTR	2455497	2455636	.	+	.	Parent=Os07t0147500-01
Chr07	irgsp1_rep	mRNA	2456969	2458136	.	+	.	ID=Os07t0147550-00;Name=Os07t0147550-00;Locus_id=Os07g0147550;Oryzabase Gene Symbol Synonym(s)=OsPsbR2%2C PsbR2;Oryzabase Gene Name Synonym(s)=PSII subunit PsbR2%2C photosystem II subunit PsbR2;Note=Similar to Photosystem II 10 kDa polypeptide%2C chloroplast.;Transcript_evidence=CT837962 (DDBJ%2C Best hit);ORF_evidence=Q40070 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: oxygen evolving complex (GO:0009654),Cellular Component: thylakoid membrane (GO:0042651);InterPro=Photosystem II PsbR (IPR006814);Oryzabase=21551;TENOR=Os07t0147550-00;KEGG=Os07t0147550-00
Chr07	irgsp1_rep	five_prime_UTR	2456969	2457017	.	+	.	Parent=Os07t0147550-00
Chr07	irgsp1_rep	CDS	2457018	2457174	.	+	0	Parent=Os07t0147550-00
Chr07	irgsp1_rep	CDS	2457399	2457457	.	+	2	Parent=Os07t0147550-00
Chr07	irgsp1_rep	CDS	2457546	2457601	.	+	0	Parent=Os07t0147550-00
Chr07	irgsp1_rep	CDS	2457701	2457753	.	+	1	Parent=Os07t0147550-00
Chr07	irgsp1_rep	CDS	2457873	2457967	.	+	2	Parent=Os07t0147550-00
Chr07	irgsp1_rep	three_prime_UTR	2457968	2458136	.	+	.	Parent=Os07t0147550-00
Chr07	irgsp1_rep	mRNA	2458295	2461953	.	-	.	ID=Os07t0147600-01;Name=Os07t0147600-01;Locus_id=Os07g0147600;Oryzabase Gene Symbol Synonym(s)=OsCrRLK1L15;Oryzabase Gene Name Synonym(s)=Catharanthus roseus receptor-like kinase1-like kinase 15;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK102834 (DDBJ%2C Best hit);ORF_evidence=Q01JV1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Malectin-like carbohydrate-binding domain (IPR024788);NIAS_FLcDNA=J033109J23;Oryzabase=18683;Expression=AK102834;TENOR=Os07t0147600-01;KEGG=Os07t0147600-01
Chr07	irgsp1_rep	five_prime_UTR	2461362	2461953	.	-	.	Parent=Os07t0147600-01
Chr07	irgsp1_rep	five_prime_UTR	2461098	2461203	.	-	.	Parent=Os07t0147600-01
Chr07	irgsp1_rep	CDS	2458548	2461097	.	-	0	Parent=Os07t0147600-01
Chr07	irgsp1_rep	three_prime_UTR	2458295	2458547	.	-	.	Parent=Os07t0147600-01
Chr07	irgsp1_rep	mRNA	2458274	2460303	.	-	.	ID=Os07t0147600-02;Name=Os07t0147600-02;Locus_id=Os07g0147600;Oryzabase Gene Symbol Synonym(s)=OsCrRLK1L15;Oryzabase Gene Name Synonym(s)=Catharanthus roseus receptor-like kinase1-like kinase 15;Note=Similar to predicted protein.;Transcript_evidence=AK105705 (DDBJ%2C Best hit);ORF_evidence=Q9SC72 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635),Malectin-like carbohydrate-binding domain (IPR024788);NIAS_FLcDNA=001-201-E02;Oryzabase=18683;Expression=AK105705;TENOR=Os07t0147600-02;KEGG=Os07t0147600-02
Chr07	irgsp1_rep	five_prime_UTR	2460303	2460303	.	-	.	Parent=Os07t0147600-02
Chr07	irgsp1_rep	CDS	2458548	2460302	.	-	0	Parent=Os07t0147600-02
Chr07	irgsp1_rep	three_prime_UTR	2458274	2458547	.	-	.	Parent=Os07t0147600-02
Chr07	irgsp1_rep	mRNA	2458276	2461541	.	-	.	ID=Os07t0147600-03;Name=Os07t0147600-03;Locus_id=Os07g0147600;Oryzabase Gene Symbol Synonym(s)=OsCrRLK1L15;Oryzabase Gene Name Synonym(s)=Catharanthus roseus receptor-like kinase1-like kinase 15;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK099551 (DDBJ%2C Best hit);ORF_evidence=Q01JV1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Malectin-like carbohydrate-binding domain (IPR024788);NIAS_FLcDNA=J013033H24;Oryzabase=18683;TENOR=Os07t0147600-03
Chr07	irgsp1_rep	five_prime_UTR	2461362	2461541	.	-	.	Parent=Os07t0147600-03
Chr07	irgsp1_rep	five_prime_UTR	2461098	2461203	.	-	.	Parent=Os07t0147600-03
Chr07	irgsp1_rep	CDS	2458548	2461097	.	-	0	Parent=Os07t0147600-03
Chr07	irgsp1_rep	three_prime_UTR	2458276	2458547	.	-	.	Parent=Os07t0147600-03
Chr07	irgsp1_rep	mRNA	2465582	2468069	.	+	.	ID=Os07t0147700-01;Name=Os07t0147700-01;Locus_id=Os07g0147700;Note=ATPase%2C BadF/BadG/BcrA/BcrD  type domain containing protein.;Transcript_evidence=AK242508 (DDBJ%2C Best hit);ORF_evidence=NP_001152135.1 (RefSeq);InterPro=ATPase%2C BadF/BadG/BcrA/BcrD type (IPR002731);NIAS_FLcDNA=J080310N23;TENOR=Os07t0147700-01;KEGG=Os07t0147700-01
Chr07	irgsp1_rep	five_prime_UTR	2465582	2465757	.	+	.	Parent=Os07t0147700-01
Chr07	irgsp1_rep	CDS	2465758	2465962	.	+	0	Parent=Os07t0147700-01
Chr07	irgsp1_rep	CDS	2466159	2466306	.	+	2	Parent=Os07t0147700-01
Chr07	irgsp1_rep	CDS	2466399	2466590	.	+	1	Parent=Os07t0147700-01
Chr07	irgsp1_rep	CDS	2466766	2466894	.	+	1	Parent=Os07t0147700-01
Chr07	irgsp1_rep	CDS	2467152	2467321	.	+	1	Parent=Os07t0147700-01
Chr07	irgsp1_rep	CDS	2467507	2467637	.	+	2	Parent=Os07t0147700-01
Chr07	irgsp1_rep	CDS	2467855	2467938	.	+	0	Parent=Os07t0147700-01
Chr07	irgsp1_rep	three_prime_UTR	2467939	2468069	.	+	.	Parent=Os07t0147700-01
Chr07	irgsp1_rep	mRNA	2469673	2472942	.	-	.	ID=Os07t0147800-00;Name=Os07t0147800-00;Locus_id=Os07g0147800;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6ZF68 (UniProt);TENOR=Os07t0147800-00;KEGG=Os07t0147800-00
Chr07	irgsp1_rep	CDS	2470970	2472942	.	-	0	Parent=Os07t0147800-00
Chr07	irgsp1_rep	CDS	2470541	2470667	.	-	1	Parent=Os07t0147800-00
Chr07	irgsp1_rep	CDS	2469991	2470092	.	-	0	Parent=Os07t0147800-00
Chr07	irgsp1_rep	CDS	2469673	2469756	.	-	0	Parent=Os07t0147800-00
Chr07	irgsp1_rep	mRNA	2476904	2480167	.	-	.	ID=Os07t0147900-01;Name=Os07t0147900-01;Locus_id=Os07g0147900;Oryzabase Gene Name Synonym(s)=precursor ferredoxin-NADP+ oxidoreductase%2C ferredoxin-NADP+ oxidoreductase;Note=Similar to Ferredoxin-NADP reductase precursor (Fragment).;Transcript_evidence=AK061177 (DDBJ%2C Best hit);ORF_evidence=A2YI62 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: thylakoid membrane (GO:0042651),Molecular Function: ferredoxin-NADP+ reductase activity (GO:0004324),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=Oxidoreductase FAD/NAD(P)-binding (IPR001433),Flavoprotein pyridine nucleotide cytoChrome reductase (IPR001709),Ferredoxin--NADP reductase (IPR012146),Ferredoxin Reductase (IPR015701),Ferredoxin reductase-type FAD-binding domain (IPR017927),Riboflavin synthase-like beta-barrel (IPR017938);NIAS_FLcDNA=006-209-C12;Oryzabase=15752;Expression=AK061177;TENOR=Os07t0147900-01;KEGG=Os07t0147900-01 (EC:1.18.1.2)
Chr07	irgsp1_rep	five_prime_UTR	2480059	2480167	.	-	.	Parent=Os07t0147900-01
Chr07	irgsp1_rep	CDS	2480035	2480058	.	-	0	Parent=Os07t0147900-01
Chr07	irgsp1_rep	CDS	2479895	2479951	.	-	0	Parent=Os07t0147900-01
Chr07	irgsp1_rep	CDS	2478791	2479126	.	-	0	Parent=Os07t0147900-01
Chr07	irgsp1_rep	CDS	2478140	2478359	.	-	0	Parent=Os07t0147900-01
Chr07	irgsp1_rep	CDS	2477530	2477770	.	-	2	Parent=Os07t0147900-01
Chr07	irgsp1_rep	CDS	2477077	2477335	.	-	1	Parent=Os07t0147900-01
Chr07	irgsp1_rep	three_prime_UTR	2476904	2477076	.	-	.	Parent=Os07t0147900-01
Chr07	irgsp1_rep	mRNA	2476843	2479127	.	-	.	ID=Os07t0147900-02;Name=Os07t0147900-02;Locus_id=Os07g0147900;Oryzabase Gene Name Synonym(s)=precursor ferredoxin-NADP+ oxidoreductase%2C ferredoxin-NADP+ oxidoreductase;Note=Similar to Ferredoxin--NADP reductase.;Transcript_evidence=AK072768 (DDBJ%2C Best hit);ORF_evidence=A2YI62 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Flavoprotein pyridine nucleotide cytoChrome reductase (IPR001709),Ferredoxin Reductase (IPR015701),Ferredoxin reductase-type FAD-binding domain (IPR017927),Riboflavin synthase-like beta-barrel (IPR017938);NIAS_FLcDNA=J023136M05;Oryzabase=15752;Expression=AK072768;TENOR=Os07t0147900-02;KEGG=Os07t0147900-02 (EC:1.18.1.2)
Chr07	irgsp1_rep	five_prime_UTR	2479127	2479127	.	-	.	Parent=Os07t0147900-02
Chr07	irgsp1_rep	CDS	2478791	2479126	.	-	0	Parent=Os07t0147900-02
Chr07	irgsp1_rep	CDS	2478111	2478359	.	-	0	Parent=Os07t0147900-02
Chr07	irgsp1_rep	three_prime_UTR	2477530	2478110	.	-	.	Parent=Os07t0147900-02
Chr07	irgsp1_rep	three_prime_UTR	2476843	2477335	.	-	.	Parent=Os07t0147900-02
Chr07	irgsp1_rep	mRNA	2488798	2490401	.	+	.	ID=Os07t0148200-01;Name=Os07t0148200-01;Locus_id=Os07g0148200;Note=Similar to Flavonol 3-O-glucosyltransferase (EC 2.4.1.91) (UDP-glucose flavonoid 3-O-glucosyltransferase) (Bronze-1) (Bz-McC allele).;Transcript_evidence=AK106312 (DDBJ%2C Best hit);ORF_evidence=Q19R32 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=002-101-D06;Expression=AK106312;TENOR=Os07t0148200-01;KEGG=Os07t0148200-01 (EC:2.4.1.91)
Chr07	irgsp1_rep	five_prime_UTR	2488798	2488853	.	+	.	Parent=Os07t0148200-01
Chr07	irgsp1_rep	CDS	2488854	2490287	.	+	0	Parent=Os07t0148200-01
Chr07	irgsp1_rep	three_prime_UTR	2490288	2490401	.	+	.	Parent=Os07t0148200-01
Chr07	irgsp1_rep	mRNA	2517283	2519073	.	-	.	ID=Os07t0148600-00;Name=Os07t0148600-00;Locus_id=Os07g0148600;Oryzabase Gene Name Synonym(s)=flavonol sulfotransferase;Note=Sulfotransferase family protein.;Transcript_evidence=AK251091 (DDBJ);ORF_evidence=Q2QU81 (UniProt);GO=Molecular Function: sulfotransferase activity (GO:0008146);InterPro=Sulfotransferase domain (IPR000863);Oryzabase=20298;TENOR=Os07t0148600-00;KEGG=Os07t0148600-00
Chr07	irgsp1_rep	CDS	2518508	2519073	.	-	0	Parent=Os07t0148600-00
Chr07	irgsp1_rep	CDS	2517314	2517839	.	-	1	Parent=Os07t0148600-00
Chr07	irgsp1_rep	three_prime_UTR	2517283	2517313	.	-	.	Parent=Os07t0148600-00
Chr07	irgsp1_rep	mRNA	2542557	2545656	.	+	.	ID=Os07t0148800-01;Name=Os07t0148800-01;Locus_id=Os07g0148800;Note=Conserved hypothetical protein.;Transcript_evidence=AK062246 (DDBJ%2C Best hit);ORF_evidence=Q69VA2 (UniProt);NIAS_FLcDNA=001-047-F05;Expression=AK062246;TENOR=Os07t0148800-01;KEGG=Os07t0148800-01
Chr07	irgsp1_rep	CDS	2542557	2542603	.	+	0	Parent=Os07t0148800-01
Chr07	irgsp1_rep	CDS	2542733	2542806	.	+	1	Parent=Os07t0148800-01
Chr07	irgsp1_rep	CDS	2542895	2543033	.	+	2	Parent=Os07t0148800-01
Chr07	irgsp1_rep	CDS	2543123	2543304	.	+	1	Parent=Os07t0148800-01
Chr07	irgsp1_rep	CDS	2543700	2543855	.	+	2	Parent=Os07t0148800-01
Chr07	irgsp1_rep	CDS	2544001	2544132	.	+	2	Parent=Os07t0148800-01
Chr07	irgsp1_rep	CDS	2544356	2544414	.	+	2	Parent=Os07t0148800-01
Chr07	irgsp1_rep	CDS	2544761	2544793	.	+	0	Parent=Os07t0148800-01
Chr07	irgsp1_rep	CDS	2544913	2545044	.	+	0	Parent=Os07t0148800-01
Chr07	irgsp1_rep	CDS	2545151	2545327	.	+	0	Parent=Os07t0148800-01
Chr07	irgsp1_rep	three_prime_UTR	2545328	2545656	.	+	.	Parent=Os07t0148800-01
Chr07	irgsp1_rep	mRNA	2546465	2547298	.	+	.	ID=Os07t0148900-01;Name=Os07t0148900-01;Locus_id=Os07g0148900;CGSNL Gene Symbol=PSAK;CGSNL Gene Name=PHOTOSYSTEM I SUBUNIT;Oryzabase Gene Symbol Synonym(s)=PsaK%2C OsPSAK;Oryzabase Gene Name Synonym(s)=PSI subunit PsaK%2C photosystem I subunit PsaK%2C PSI subunit X;Note=Photosystem I protein-like protein.;Transcript_evidence=AK058788 (DDBJ%2C Best hit);ORF_evidence=P36886 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem I (GO:0009522),Cellular Component: membrane (GO:0016020);InterPro=Photosystem I PsaG/PsaK protein (IPR000549),Photosystem I PsaG/PsaK%2C plant (IPR016370),Photosystem I PsaK%2C reaction centre%2C plant (IPR017493);NIAS_FLcDNA=001-002-E09;Oryzabase=9591;Expression=AK058788;TENOR=Os07t0148900-01;KEGG=Os07t0148900-01
Chr07	irgsp1_rep	five_prime_UTR	2546465	2546523	.	+	.	Parent=Os07t0148900-01
Chr07	irgsp1_rep	CDS	2546524	2546601	.	+	0	Parent=Os07t0148900-01
Chr07	irgsp1_rep	CDS	2546719	2546799	.	+	0	Parent=Os07t0148900-01
Chr07	irgsp1_rep	CDS	2546918	2547160	.	+	0	Parent=Os07t0148900-01
Chr07	irgsp1_rep	three_prime_UTR	2547161	2547298	.	+	.	Parent=Os07t0148900-01
Chr07	irgsp1_rep	mRNA	2569102	2570516	.	+	.	ID=Os07t0149250-01;Name=Os07t0149250-01;Locus_id=Os07g0149250;Note=Non-protein coding transcript.;Transcript_evidence=AK288927 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090082E19;TENOR=Os07t0149250-01
Chr07	irgsp1_rep	exon	2569102	2570516	.	+	.	Parent=Os07t0149250-01
Chr07	irgsp1_rep	mRNA	2569534	2570553	.	-	.	ID=Os07t0149300-00;Name=Os07t0149300-00;Locus_id=Os07g0149300;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8B7B4 (UniProt);TENOR=Os07t0149300-00;KEGG=Os07t0149300-00
Chr07	irgsp1_rep	CDS	2570458	2570553	.	-	0	Parent=Os07t0149300-00
Chr07	irgsp1_rep	CDS	2569794	2569858	.	-	0	Parent=Os07t0149300-00
Chr07	irgsp1_rep	CDS	2569534	2569654	.	-	1	Parent=Os07t0149300-00
Chr07	irgsp1_rep	mRNA	2595756	2599060	.	-	.	ID=Os07t0149900-01;Name=Os07t0149900-01;Locus_id=Os07g0149900;Note=X8 domain containing protein.;Transcript_evidence=AK109055 (DDBJ%2C Best hit);ORF_evidence=A2YI70 (UniProt);InterPro=X8 (IPR012946);NIAS_FLcDNA=002-154-E09;TENOR=Os07t0149900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	2598742	2599060	.	-	.	Parent=Os07t0149900-01
Chr07	irgsp1_rep	CDS	2598741	2598741	.	-	0	Parent=Os07t0149900-01
Chr07	irgsp1_rep	CDS	2596247	2596591	.	-	2	Parent=Os07t0149900-01
Chr07	irgsp1_rep	CDS	2596116	2596146	.	-	2	Parent=Os07t0149900-01
Chr07	irgsp1_rep	CDS	2595925	2596024	.	-	1	Parent=Os07t0149900-01
Chr07	irgsp1_rep	three_prime_UTR	2595756	2595924	.	-	.	Parent=Os07t0149900-01
Chr07	irgsp1_rep	mRNA	2601216	2606217	.	-	.	ID=Os07t0150100-01;Name=Os07t0150100-01;Locus_id=Os07g0150100;CGSNL Gene Symbol=ERD4;CGSNL Gene Name=EARLY RESPONSIVE TO DEHYDRATION 4;Oryzabase Gene Symbol Synonym(s)=OsOSCA3.1%2C OSCA3.1%2C OsIOSCA3.1%2C OsERD4%2C OsDDP7%2C DDP7%2C OsDDP7.1%2C OsDDP7.2;Oryzabase Gene Name Synonym(s)=Hyperosmolality-gated calcium-permeable channel 3.1%2C OSCA channels 3.1%2C Early Responsive to Dehydration 4%2C DUF221 Domain containing Protein 7;Note=Protein of unknown function DUF221 domain containing protein.;Transcript_evidence=AK098912 (DDBJ%2C Best hit),AK065241 (DDBJ%2C Best hit);ORF_evidence=NP_001108122.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Domain of unknown function DUF221 (IPR003864);NIAS_FLcDNA=J013002I07,J013002I09;Oryzabase=19658;Expression=AK098912;TENOR=Os07t0150100-01;KEGG=Os07t0150100-01
Chr07	irgsp1_rep	five_prime_UTR	2606046	2606217	.	-	.	Parent=Os07t0150100-01
Chr07	irgsp1_rep	CDS	2605772	2606045	.	-	0	Parent=Os07t0150100-01
Chr07	irgsp1_rep	CDS	2604626	2604789	.	-	2	Parent=Os07t0150100-01
Chr07	irgsp1_rep	CDS	2603529	2603804	.	-	0	Parent=Os07t0150100-01
Chr07	irgsp1_rep	CDS	2602556	2603400	.	-	0	Parent=Os07t0150100-01
Chr07	irgsp1_rep	CDS	2602193	2602448	.	-	1	Parent=Os07t0150100-01
Chr07	irgsp1_rep	CDS	2601583	2601963	.	-	0	Parent=Os07t0150100-01
Chr07	irgsp1_rep	three_prime_UTR	2601216	2601582	.	-	.	Parent=Os07t0150100-01
Chr07	irgsp1_rep	mRNA	2613935	2616323	.	+	.	ID=Os07t0150200-01;Name=Os07t0150200-01;Locus_id=Os07g0150200;Note=Similar to 40S ribosomal protein S12-1.;Transcript_evidence=AK121635 (DDBJ%2C Best hit),AK058680 (DDBJ%2C Best hit);ORF_evidence=B8B7B6 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S12e (IPR000530),Ribosomal protein L7Ae/L30e/S12e/Gadd45 (IPR004038);NIAS_FLcDNA=J033051C16,001-019-A01;TENOR=Os07t0150200-01
Chr07	irgsp1_rep	five_prime_UTR	2613935	2613990	.	+	.	Parent=Os07t0150200-01
Chr07	irgsp1_rep	five_prime_UTR	2614084	2614126	.	+	.	Parent=Os07t0150200-01
Chr07	irgsp1_rep	CDS	2614127	2614131	.	+	0	Parent=Os07t0150200-01
Chr07	irgsp1_rep	CDS	2614961	2615246	.	+	1	Parent=Os07t0150200-01
Chr07	irgsp1_rep	CDS	2615891	2615956	.	+	0	Parent=Os07t0150200-01
Chr07	irgsp1_rep	CDS	2616047	2616106	.	+	0	Parent=Os07t0150200-01
Chr07	irgsp1_rep	three_prime_UTR	2616107	2616323	.	+	.	Parent=Os07t0150200-01
Chr07	irgsp1_rep	mRNA	2634435	2640489	.	-	.	ID=Os07t0150500-01;Name=Os07t0150500-01;Locus_id=Os07g0150500;Note=Zinc finger%2C C3HC-like domain containing protein.;Transcript_evidence=AK073749 (DDBJ%2C Best hit);ORF_evidence=A2YI76 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C3HC-like (IPR012935);NIAS_FLcDNA=J033070M17;Expression=AK073749;TENOR=Os07t0150500-01;KEGG=Os07t0150500-01
Chr07	irgsp1_rep	five_prime_UTR	2640420	2640489	.	-	.	Parent=Os07t0150500-01
Chr07	irgsp1_rep	CDS	2640334	2640419	.	-	0	Parent=Os07t0150500-01
Chr07	irgsp1_rep	CDS	2639198	2639447	.	-	1	Parent=Os07t0150500-01
Chr07	irgsp1_rep	CDS	2638392	2638515	.	-	0	Parent=Os07t0150500-01
Chr07	irgsp1_rep	CDS	2637426	2637769	.	-	2	Parent=Os07t0150500-01
Chr07	irgsp1_rep	CDS	2635597	2637319	.	-	0	Parent=Os07t0150500-01
Chr07	irgsp1_rep	CDS	2635030	2635274	.	-	2	Parent=Os07t0150500-01
Chr07	irgsp1_rep	CDS	2634879	2634938	.	-	0	Parent=Os07t0150500-01
Chr07	irgsp1_rep	three_prime_UTR	2634848	2634878	.	-	.	Parent=Os07t0150500-01
Chr07	irgsp1_rep	three_prime_UTR	2634435	2634750	.	-	.	Parent=Os07t0150500-01
Chr07	irgsp1_rep	mRNA	2635874	2640419	.	+	.	ID=Os07t0150600-00;Name=Os07t0150600-00;Locus_id=Os07g0150600;Note=Non-protein coding transcript.;Transcript_evidence=BT085109 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0150600-00
Chr07	irgsp1_rep	exon	2635874	2637315	.	+	.	Parent=Os07t0150600-00
Chr07	irgsp1_rep	exon	2637420	2637739	.	+	.	Parent=Os07t0150600-00
Chr07	irgsp1_rep	exon	2638359	2638502	.	+	.	Parent=Os07t0150600-00
Chr07	irgsp1_rep	exon	2639189	2639449	.	+	.	Parent=Os07t0150600-00
Chr07	irgsp1_rep	exon	2640329	2640419	.	+	.	Parent=Os07t0150600-00
Chr07	irgsp1_rep	mRNA	2643540	2647773	.	-	.	ID=Os07t0150700-01;Name=Os07t0150700-01;Locus_id=Os07g0150700;RAP-DB Gene Symbol Synonym(s)=CIPK23%2C OsCIPK23%2C Os-CIPK23;RAP-DB Gene Name Synonym(s)=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 23%2C CBL-interacting protein kinase 23%2C CBL-Interacting Protein Kinase23;CGSNL Gene Symbol=CIPK23;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 23;Oryzabase Gene Symbol Synonym(s)=OsCIPK23%2C Os-CIPK23;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 23%2C CBL-Interacting Protein Kinase23;Note=Serine/threonine protein kinase%2C Pollination and drought stress responses%2C Reguration of potassium uptake by CBL1-CIPK23 complex;Transcript_evidence=AK069726;ORF_evidence=Q6ZLP5;GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine/threonine/dual specificity protein kinase%2C catalytic  domain (IPR002290),NAF/FISL domain (IPR018451),NAF domain (IPR004041),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J023030M13;Manual Curation=November 14%2C 2014;Literature_PMID=25096783,18804072,17535819;Oryzabase=7410;TENOR=Os07t0150700-01;KEGG=Os07t0150700-01 (EC:2.7.11.11)
Chr07	irgsp1_rep	five_prime_UTR	2647495	2647773	.	-	.	Parent=Os07t0150700-01
Chr07	irgsp1_rep	CDS	2647324	2647494	.	-	0	Parent=Os07t0150700-01
Chr07	irgsp1_rep	CDS	2646733	2646795	.	-	0	Parent=Os07t0150700-01
Chr07	irgsp1_rep	CDS	2646066	2646137	.	-	0	Parent=Os07t0150700-01
Chr07	irgsp1_rep	CDS	2645873	2645980	.	-	0	Parent=Os07t0150700-01
Chr07	irgsp1_rep	CDS	2645704	2645784	.	-	0	Parent=Os07t0150700-01
Chr07	irgsp1_rep	CDS	2645414	2645467	.	-	0	Parent=Os07t0150700-01
Chr07	irgsp1_rep	CDS	2645161	2645286	.	-	0	Parent=Os07t0150700-01
Chr07	irgsp1_rep	CDS	2644977	2645066	.	-	0	Parent=Os07t0150700-01
Chr07	irgsp1_rep	CDS	2644772	2644891	.	-	0	Parent=Os07t0150700-01
Chr07	irgsp1_rep	CDS	2644568	2644684	.	-	0	Parent=Os07t0150700-01
Chr07	irgsp1_rep	CDS	2644333	2644452	.	-	0	Parent=Os07t0150700-01
Chr07	irgsp1_rep	CDS	2644187	2644243	.	-	0	Parent=Os07t0150700-01
Chr07	irgsp1_rep	CDS	2643994	2644068	.	-	0	Parent=Os07t0150700-01
Chr07	irgsp1_rep	CDS	2643799	2643897	.	-	0	Parent=Os07t0150700-01
Chr07	irgsp1_rep	three_prime_UTR	2643540	2643798	.	-	.	Parent=Os07t0150700-01
Chr07	irgsp1_rep	mRNA	2663551	2664031	.	-	.	ID=Os07t0150901-01;Name=Os07t0150901-01;Locus_id=Os07g0150901;Note=Conserved hypothetical protein.;Transcript_evidence=AK241621 (DDBJ%2C Best hit);ORF_evidence=B9FVI6 (UniProt);NIAS_FLcDNA=J065186I02;TENOR=Os07t0150901-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	2663934	2664031	.	-	.	Parent=Os07t0150901-01
Chr07	irgsp1_rep	CDS	2663703	2663933	.	-	0	Parent=Os07t0150901-01
Chr07	irgsp1_rep	three_prime_UTR	2663551	2663702	.	-	.	Parent=Os07t0150901-01
Chr07	irgsp1_rep	mRNA	2678498	2679076	.	+	.	ID=Os07t0151100-01;Name=Os07t0151100-01;Locus_id=Os07g0151100;RAP-DB Gene Symbol Synonym(s)=GRX19%2C OsGRX19;RAP-DB Gene Name Synonym(s)=GLUTAREDOXIN 19%2C glutaredoxin 19;CGSNL Gene Symbol=MIL1 %2C GRX19;CGSNL Gene Name=MICROSPORELESS 1%2C GLUTAREDOXIN 19;Oryzabase Gene Symbol Synonym(s)=MIL1%2C mil1%2C OsGRX19;Oryzabase Gene Name Synonym(s)=MICROSPORELESS1%2C microsporeless1%2C glutaredoxin 19;Note=CC-type glutaredoxin%2C Panicle development;Transcript_evidence=Q7XIZ1;ORF_evidence=Q7XIZ1;GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin-like%2C plant II (IPR011905),Thioredoxin-like fold (IPR012336),Glutaredoxin (IPR002109);Manual Curation=September 16%2C 2014;Literature_PMID=21044985;Oryzabase=10372,13573;TENOR=Os07t0151100-00
Chr07	irgsp1_rep	CDS	2678498	2679076	.	+	0	Parent=Os07t0151100-01
Chr07	irgsp1_rep	mRNA	2678635	2679332	.	+	.	ID=Os07t0151100-02;Name=Os07t0151100-02;Locus_id=Os07g0151100;RAP-DB Gene Symbol Synonym(s)=MIL1%2C mil1;RAP-DB Gene Name Synonym(s)=MICROSPORELESS 1%2C MICROSPORELESS1%2C microsporeless1;CGSNL Gene Symbol=MIL1 %2C GRX19;CGSNL Gene Name=MICROSPORELESS 1%2C GLUTAREDOXIN 19;Oryzabase Gene Symbol Synonym(s)=MIL1%2C mil1%2C OsGRX19;Oryzabase Gene Name Synonym(s)=MICROSPORELESS1%2C microsporeless1%2C glutaredoxin 19;Note=Plant-specific CC-type glutaredoxin%2C Control of meiosis entry in microsporocytes;Transcript_evidence=JN417767 (japonica);ORF_evidence=H9MER5;GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin-like%2C plant II (IPR011905),Thioredoxin-like fold (IPR012336),Glutaredoxin (IPR002109),Glutaredoxin subgroup (IPR014025);Manual Curation=September 16%2C 2014;Literature_PMID=22319054;Oryzabase=10372,13573
Chr07	irgsp1_rep	five_prime_UTR	2678635	2678692	.	+	.	Parent=Os07t0151100-02
Chr07	irgsp1_rep	CDS	2678693	2679076	.	+	0	Parent=Os07t0151100-02
Chr07	irgsp1_rep	three_prime_UTR	2679077	2679332	.	+	.	Parent=Os07t0151100-02
Chr07	irgsp1_rep	mRNA	2686548	2689650	.	+	.	ID=Os07t0151200-00;Name=Os07t0151200-00;Locus_id=Os07g0151200;Note=Sugar/inositol transporter domain containing protein.;Transcript_evidence=BT068655 (DDBJ);ORF_evidence=XP_002893607.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);TENOR=Os07t0151200-00;KEGG=Os07t0151200-00
Chr07	irgsp1_rep	five_prime_UTR	2686548	2686554	.	+	.	Parent=Os07t0151200-00
Chr07	irgsp1_rep	CDS	2686555	2686687	.	+	0	Parent=Os07t0151200-00
Chr07	irgsp1_rep	CDS	2687183	2687253	.	+	2	Parent=Os07t0151200-00
Chr07	irgsp1_rep	CDS	2687360	2687803	.	+	0	Parent=Os07t0151200-00
Chr07	irgsp1_rep	CDS	2688508	2689650	.	+	0	Parent=Os07t0151200-00
Chr07	irgsp1_rep	mRNA	2688701	2689497	.	-	.	ID=Os07t0151250-00;Name=Os07t0151250-00;Locus_id=Os07g0151250;Note=Hypothetical protein.;Transcript_evidence=EU940776 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0151250-00
Chr07	irgsp1_rep	CDS	2689243	2689497	.	-	0	Parent=Os07t0151250-00
Chr07	irgsp1_rep	CDS	2688701	2689008	.	-	0	Parent=Os07t0151250-00
Chr07	irgsp1_rep	mRNA	2690661	2693089	.	+	.	ID=Os07t0151300-01;Name=Os07t0151300-01;Locus_id=Os07g0151300;Note=MAGE protein family protein.;Transcript_evidence=AK102057 (DDBJ%2C Best hit);ORF_evidence=B4FM01 (UniProt);InterPro=MAGE protein (IPR002190);NIAS_FLcDNA=J033082D03;Expression=AK102057;TENOR=Os07t0151300-01;KEGG=Os07t0151300-01
Chr07	irgsp1_rep	five_prime_UTR	2690661	2690916	.	+	.	Parent=Os07t0151300-01
Chr07	irgsp1_rep	CDS	2690917	2690964	.	+	0	Parent=Os07t0151300-01
Chr07	irgsp1_rep	CDS	2691087	2691336	.	+	0	Parent=Os07t0151300-01
Chr07	irgsp1_rep	CDS	2691411	2691563	.	+	2	Parent=Os07t0151300-01
Chr07	irgsp1_rep	CDS	2691648	2691753	.	+	2	Parent=Os07t0151300-01
Chr07	irgsp1_rep	CDS	2691836	2691950	.	+	1	Parent=Os07t0151300-01
Chr07	irgsp1_rep	CDS	2692604	2692639	.	+	0	Parent=Os07t0151300-01
Chr07	irgsp1_rep	three_prime_UTR	2692640	2692660	.	+	.	Parent=Os07t0151300-01
Chr07	irgsp1_rep	three_prime_UTR	2692773	2693089	.	+	.	Parent=Os07t0151300-01
Chr07	irgsp1_rep	mRNA	2715649	2717667	.	-	.	ID=Os07t0151650-01;Name=Os07t0151650-01;Locus_id=Os07g0151650;Note=Hypothetical gene.;Transcript_evidence=AK288164 (DDBJ%2C Best hit),AK288202 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090002E02,J090008J03;TENOR=Os07t0151650-01;KEGG=Os07t0151650-01
Chr07	irgsp1_rep	five_prime_UTR	2716288	2717667	.	-	.	Parent=Os07t0151650-01
Chr07	irgsp1_rep	CDS	2715982	2716287	.	-	0	Parent=Os07t0151650-01
Chr07	irgsp1_rep	three_prime_UTR	2715649	2715981	.	-	.	Parent=Os07t0151650-01
Chr07	irgsp1_rep	mRNA	2717555	2718371	.	+	.	ID=Os07t0151700-00;Name=Os07t0151700-00;Locus_id=Os07g0151700;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001175060.1 (RefSeq);TENOR=Os07t0151700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	2717555	2717634	.	+	0	Parent=Os07t0151700-00
Chr07	irgsp1_rep	CDS	2717797	2718194	.	+	1	Parent=Os07t0151700-00
Chr07	irgsp1_rep	CDS	2718283	2718371	.	+	2	Parent=Os07t0151700-00
Chr07	irgsp1_rep	mRNA	2721785	2723535	.	-	.	ID=Os07t0151800-01;Name=Os07t0151800-01;Locus_id=Os07g0151800;Note=Conserved hypothetical protein.;Transcript_evidence=AK105339 (DDBJ%2C Best hit);ORF_evidence=A2YI84 (UniProt);NIAS_FLcDNA=001-118-G04;Expression=AK105339;TENOR=Os07t0151800-01;KEGG=Os07t0151800-01
Chr07	irgsp1_rep	five_prime_UTR	2723460	2723535	.	-	.	Parent=Os07t0151800-01
Chr07	irgsp1_rep	CDS	2723364	2723459	.	-	0	Parent=Os07t0151800-01
Chr07	irgsp1_rep	CDS	2722322	2722419	.	-	0	Parent=Os07t0151800-01
Chr07	irgsp1_rep	CDS	2722024	2722216	.	-	1	Parent=Os07t0151800-01
Chr07	irgsp1_rep	three_prime_UTR	2721785	2722023	.	-	.	Parent=Os07t0151800-01
Chr07	irgsp1_rep	mRNA	2727975	2730142	.	-	.	ID=Os07t0151900-01;Name=Os07t0151900-01;Locus_id=Os07g0151900;Note=Conserved hypothetical protein.;Transcript_evidence=AK240814 (DDBJ%2C Best hit);ORF_evidence=NP_001175061.1 (RefSeq);NIAS_FLcDNA=J065008G19;TENOR=Os07t0151900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	2729975	2730142	.	-	.	Parent=Os07t0151900-01
Chr07	irgsp1_rep	five_prime_UTR	2728599	2728644	.	-	.	Parent=Os07t0151900-01
Chr07	irgsp1_rep	CDS	2728546	2728598	.	-	0	Parent=Os07t0151900-01
Chr07	irgsp1_rep	CDS	2728247	2728439	.	-	1	Parent=Os07t0151900-01
Chr07	irgsp1_rep	three_prime_UTR	2727975	2728246	.	-	.	Parent=Os07t0151900-01
Chr07	irgsp1_rep	mRNA	2751213	2756586	.	+	.	ID=Os07t0152000-01;Name=Os07t0152000-01;Locus_id=Os07g0152000;RAP-DB Gene Symbol Synonym(s)=OsTCP21%2C TCP21;RAP-DB Gene Name Synonym(s)=TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 21;CGSNL Gene Symbol=TCP21;CGSNL Gene Name=TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 21;Oryzabase Gene Symbol Synonym(s)=OsTCP21;Note=Transcription factor %2C Cold tolerance;Transcript_evidence=NM_001065440;ORF_evidence=Q0D8K4;InterPro=Transcription factor%2C TCP (IPR005333),Transcription factor TCP subgroup (IPR017887),CYC/TB1%2C R domain (IPR017888);Manual Curation=November 26%2C 2015;Literature_PMID=24667308;Oryzabase=12386;TENOR=Os07t0152000-00
Chr07	irgsp1_rep	five_prime_UTR	2751213	2751443	.	+	.	Parent=Os07t0152000-01
Chr07	irgsp1_rep	CDS	2751444	2752781	.	+	0	Parent=Os07t0152000-01
Chr07	irgsp1_rep	three_prime_UTR	2752782	2752828	.	+	.	Parent=Os07t0152000-01
Chr07	irgsp1_rep	three_prime_UTR	2756208	2756586	.	+	.	Parent=Os07t0152000-01
Chr07	irgsp1_rep	mRNA	2757219	2761900	.	+	.	ID=Os07t0152101-01;Name=Os07t0152101-01;Locus_id=Os07g0152101;Note=Hypothetical gene.;Transcript_evidence=AK289184 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100033H08;TENOR=Os07t0152101-01
Chr07	irgsp1_rep	five_prime_UTR	2757219	2757758	.	+	.	Parent=Os07t0152101-01
Chr07	irgsp1_rep	five_prime_UTR	2758133	2758523	.	+	.	Parent=Os07t0152101-01
Chr07	irgsp1_rep	five_prime_UTR	2758691	2760431	.	+	.	Parent=Os07t0152101-01
Chr07	irgsp1_rep	CDS	2760432	2761900	.	+	0	Parent=Os07t0152101-01
Chr07	irgsp1_rep	mRNA	2757336	2761925	.	-	.	ID=Os07t0152200-01;Name=Os07t0152200-01;Locus_id=Os07g0152200;Note=Similar to predicted protein.;Transcript_evidence=AK242765 (DDBJ%2C Best hit);ORF_evidence=A2YI88 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J090052O12;TENOR=Os07t0152200-01;KEGG=Os07t0152200-01
Chr07	irgsp1_rep	five_prime_UTR	2761632	2761925	.	-	.	Parent=Os07t0152200-01
Chr07	irgsp1_rep	CDS	2758691	2761631	.	-	0	Parent=Os07t0152200-01
Chr07	irgsp1_rep	CDS	2758135	2758523	.	-	2	Parent=Os07t0152200-01
Chr07	irgsp1_rep	three_prime_UTR	2757336	2758134	.	-	.	Parent=Os07t0152200-01
Chr07	irgsp1_rep	mRNA	2765292	2770654	.	+	.	ID=Os07t0152301-01;Name=Os07t0152301-01;Locus_id=Os07g0152301;Note=Similar to Calcineurin B-like protein.;Transcript_evidence=AK289123 (DDBJ%2C Best hit);ORF_evidence=C8TEU3 (UniProt);NIAS_FLcDNA=J090097L18;TENOR=Os07t0152301-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	2765292	2767293	.	+	.	Parent=Os07t0152301-01
Chr07	irgsp1_rep	CDS	2767294	2768145	.	+	0	Parent=Os07t0152301-01
Chr07	irgsp1_rep	three_prime_UTR	2768146	2770654	.	+	.	Parent=Os07t0152301-01
Chr07	irgsp1_rep	mRNA	2788416	2789090	.	+	.	ID=Os07t0152500-00;Name=Os07t0152500-00;Locus_id=Os07g0152500;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);InterPro=Ribonuclease H1%2C N-terminal (IPR011320);TENOR=Os07t0152500-00
Chr07	irgsp1_rep	five_prime_UTR	2788416	2788419	.	+	.	Parent=Os07t0152500-00
Chr07	irgsp1_rep	CDS	2788420	2788827	.	+	0	Parent=Os07t0152500-00
Chr07	irgsp1_rep	three_prime_UTR	2788828	2789090	.	+	.	Parent=Os07t0152500-00
Chr07	irgsp1_rep	mRNA	2791348	2792566	.	+	.	ID=Os07t0152700-00;Name=Os07t0152700-00;Locus_id=Os07g0152700;CGSNL Gene Symbol=GSTU45;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 45;Oryzabase Gene Symbol Synonym(s)=OsGSTU45;Note=Similar to Glutathione transferase.;Transcript_evidence=AK330265 (DDBJ);ORF_evidence=B9FVJ2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);Oryzabase=9562;TENOR=Os07t0152700-00;KEGG=Os07t0152700-00
Chr07	irgsp1_rep	CDS	2791348	2791728	.	+	0	Parent=Os07t0152700-00
Chr07	irgsp1_rep	CDS	2792220	2792432	.	+	0	Parent=Os07t0152700-00
Chr07	irgsp1_rep	three_prime_UTR	2792433	2792566	.	+	.	Parent=Os07t0152700-00
Chr07	irgsp1_rep	mRNA	2794136	2797283	.	+	.	ID=Os07t0152800-01;Name=Os07t0152800-01;Locus_id=Os07g0152800;Note=Similar to Glycine-rich protein.;Transcript_evidence=AK065458 (DDBJ%2C Best hit);ORF_evidence=B6TIW3 (UniProt);NIAS_FLcDNA=J013023D18;Expression=AK065458;TENOR=Os07t0152800-01;KEGG=Os07t0152800-01
Chr07	irgsp1_rep	five_prime_UTR	2794136	2794268	.	+	.	Parent=Os07t0152800-01
Chr07	irgsp1_rep	CDS	2794269	2794275	.	+	0	Parent=Os07t0152800-01
Chr07	irgsp1_rep	CDS	2795248	2795487	.	+	2	Parent=Os07t0152800-01
Chr07	irgsp1_rep	CDS	2795570	2795883	.	+	2	Parent=Os07t0152800-01
Chr07	irgsp1_rep	CDS	2796452	2796544	.	+	0	Parent=Os07t0152800-01
Chr07	irgsp1_rep	CDS	2796637	2796825	.	+	0	Parent=Os07t0152800-01
Chr07	irgsp1_rep	three_prime_UTR	2796826	2797283	.	+	.	Parent=Os07t0152800-01
Chr07	irgsp1_rep	mRNA	2797691	2801322	.	+	.	ID=Os07t0152900-01;Name=Os07t0152900-01;Locus_id=Os07g0152900;CGSNL Gene Symbol=GLO5;CGSNL Gene Name=GLYCOLATE OXIDASE 5;Oryzabase Gene Symbol Synonym(s)=GLO4%2C OsGLO4%2C OsGLO5;Oryzabase Gene Name Synonym(s)=Glycolate oxidase 4%2C Glycolate oxidase 5;Note=Similar to Glycolate oxidase (EC 1.1.3.15) (Fragment).;Transcript_evidence=AK120929 (DDBJ%2C Best hit);ORF_evidence=Q6YT73 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FMN-dependent dehydrogenase (IPR000262),FMN-dependent alpha-hydroxy acid dehydrogenase%2C active site (IPR008259),Alpha-hydroxy acid dehydrogenase%2C FMN-dependent (IPR012133),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J023036A14;Oryzabase=12475;Expression=AK120929;TENOR=Os07t0152900-01;KEGG=Os07t0152900-01 (EC:1.1.3.15)
Chr07	irgsp1_rep	five_prime_UTR	2797691	2798019	.	+	.	Parent=Os07t0152900-01
Chr07	irgsp1_rep	five_prime_UTR	2798288	2798322	.	+	.	Parent=Os07t0152900-01
Chr07	irgsp1_rep	CDS	2798323	2798462	.	+	0	Parent=Os07t0152900-01
Chr07	irgsp1_rep	CDS	2799028	2799152	.	+	1	Parent=Os07t0152900-01
Chr07	irgsp1_rep	CDS	2799358	2799404	.	+	2	Parent=Os07t0152900-01
Chr07	irgsp1_rep	CDS	2799520	2799597	.	+	0	Parent=Os07t0152900-01
Chr07	irgsp1_rep	CDS	2799686	2799810	.	+	0	Parent=Os07t0152900-01
Chr07	irgsp1_rep	CDS	2799964	2800030	.	+	1	Parent=Os07t0152900-01
Chr07	irgsp1_rep	CDS	2800114	2800176	.	+	0	Parent=Os07t0152900-01
Chr07	irgsp1_rep	CDS	2800336	2800405	.	+	0	Parent=Os07t0152900-01
Chr07	irgsp1_rep	CDS	2800490	2800590	.	+	2	Parent=Os07t0152900-01
Chr07	irgsp1_rep	CDS	2800685	2800789	.	+	0	Parent=Os07t0152900-01
Chr07	irgsp1_rep	CDS	2800871	2801059	.	+	0	Parent=Os07t0152900-01
Chr07	irgsp1_rep	three_prime_UTR	2801060	2801322	.	+	.	Parent=Os07t0152900-01
Chr07	irgsp1_rep	mRNA	2797941	2798781	.	+	.	ID=Os07t0152900-02;Name=Os07t0152900-02;Locus_id=Os07g0152900;CGSNL Gene Symbol=GLO5;CGSNL Gene Name=GLYCOLATE OXIDASE 5;Oryzabase Gene Symbol Synonym(s)=GLO4%2C OsGLO4%2C OsGLO5;Oryzabase Gene Name Synonym(s)=Glycolate oxidase 4%2C Glycolate oxidase 5;Note=Similar to Glycolate oxidase.;Transcript_evidence=AK062433 (DDBJ%2C Best hit);ORF_evidence=Q6YT73 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FMN-dependent dehydrogenase (IPR000262),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=001-102-H12;Oryzabase=12475;Expression=AK062433;TENOR=Os07t0152900-02;KEGG=Os07t0152900-02 (EC:1.1.3.15)
Chr07	irgsp1_rep	five_prime_UTR	2797941	2798019	.	+	.	Parent=Os07t0152900-02
Chr07	irgsp1_rep	five_prime_UTR	2798288	2798322	.	+	.	Parent=Os07t0152900-02
Chr07	irgsp1_rep	CDS	2798323	2798466	.	+	0	Parent=Os07t0152900-02
Chr07	irgsp1_rep	three_prime_UTR	2798467	2798781	.	+	.	Parent=Os07t0152900-02
Chr07	irgsp1_rep	mRNA	2797948	2801343	.	+	.	ID=Os07t0152900-03;Name=Os07t0152900-03;Locus_id=Os07g0152900;CGSNL Gene Symbol=GLO5;CGSNL Gene Name=GLYCOLATE OXIDASE 5;Oryzabase Gene Symbol Synonym(s)=GLO4%2C OsGLO4%2C OsGLO5;Oryzabase Gene Name Synonym(s)=Glycolate oxidase 4%2C Glycolate oxidase 5;Note=Similar to Glycolate oxidase (EC 1.1.3.15) (Fragment).;Transcript_evidence=AK062189 (DDBJ%2C Best hit);ORF_evidence=Q6YT73 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FMN-dependent dehydrogenase (IPR000262),FMN-dependent alpha-hydroxy acid dehydrogenase%2C active site (IPR008259),Alpha-hydroxy acid dehydrogenase%2C FMN-dependent (IPR012133),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=001-046-E08;Oryzabase=12475;Expression=AK062189;TENOR=Os07t0152900-03;KEGG=Os07t0152900-03 (EC:1.1.3.15)
Chr07	irgsp1_rep	five_prime_UTR	2797948	2798019	.	+	.	Parent=Os07t0152900-03
Chr07	irgsp1_rep	five_prime_UTR	2798288	2798322	.	+	.	Parent=Os07t0152900-03
Chr07	irgsp1_rep	CDS	2798323	2798462	.	+	0	Parent=Os07t0152900-03
Chr07	irgsp1_rep	CDS	2799028	2799152	.	+	1	Parent=Os07t0152900-03
Chr07	irgsp1_rep	CDS	2799358	2799404	.	+	2	Parent=Os07t0152900-03
Chr07	irgsp1_rep	CDS	2799520	2799597	.	+	0	Parent=Os07t0152900-03
Chr07	irgsp1_rep	CDS	2799686	2799810	.	+	0	Parent=Os07t0152900-03
Chr07	irgsp1_rep	CDS	2799964	2800030	.	+	1	Parent=Os07t0152900-03
Chr07	irgsp1_rep	CDS	2800114	2800176	.	+	0	Parent=Os07t0152900-03
Chr07	irgsp1_rep	CDS	2800336	2800405	.	+	0	Parent=Os07t0152900-03
Chr07	irgsp1_rep	CDS	2800490	2800590	.	+	2	Parent=Os07t0152900-03
Chr07	irgsp1_rep	CDS	2800685	2800789	.	+	0	Parent=Os07t0152900-03
Chr07	irgsp1_rep	CDS	2800871	2801059	.	+	0	Parent=Os07t0152900-03
Chr07	irgsp1_rep	three_prime_UTR	2801060	2801343	.	+	.	Parent=Os07t0152900-03
Chr07	irgsp1_rep	mRNA	2798257	2801322	.	+	.	ID=Os07t0152900-04;Name=Os07t0152900-04;Locus_id=Os07g0152900;CGSNL Gene Symbol=GLO5;CGSNL Gene Name=GLYCOLATE OXIDASE 5;Oryzabase Gene Symbol Synonym(s)=GLO4%2C OsGLO4%2C OsGLO5;Oryzabase Gene Name Synonym(s)=Glycolate oxidase 4%2C Glycolate oxidase 5;Note=Similar to Glycolate oxidase (EC 1.1.3.15) (Fragment).;Transcript_evidence=AK103933 (DDBJ%2C Best hit);ORF_evidence=Q6YT73 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FMN-dependent dehydrogenase (IPR000262),FMN-dependent alpha-hydroxy acid dehydrogenase%2C active site (IPR008259),Alpha-hydroxy acid dehydrogenase%2C FMN-dependent (IPR012133),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=001-013-E11;Oryzabase=12475;Expression=AK103933;TENOR=Os07t0152900-04;KEGG=Os07t0152900-04 (EC:1.1.3.15)
Chr07	irgsp1_rep	five_prime_UTR	2798257	2798322	.	+	.	Parent=Os07t0152900-04
Chr07	irgsp1_rep	CDS	2798323	2798462	.	+	0	Parent=Os07t0152900-04
Chr07	irgsp1_rep	CDS	2799028	2799152	.	+	1	Parent=Os07t0152900-04
Chr07	irgsp1_rep	CDS	2799358	2799404	.	+	2	Parent=Os07t0152900-04
Chr07	irgsp1_rep	CDS	2799520	2799597	.	+	0	Parent=Os07t0152900-04
Chr07	irgsp1_rep	CDS	2799686	2799810	.	+	0	Parent=Os07t0152900-04
Chr07	irgsp1_rep	CDS	2799964	2800030	.	+	1	Parent=Os07t0152900-04
Chr07	irgsp1_rep	CDS	2800114	2800176	.	+	0	Parent=Os07t0152900-04
Chr07	irgsp1_rep	CDS	2800336	2800405	.	+	0	Parent=Os07t0152900-04
Chr07	irgsp1_rep	CDS	2800490	2800590	.	+	2	Parent=Os07t0152900-04
Chr07	irgsp1_rep	CDS	2800685	2800789	.	+	0	Parent=Os07t0152900-04
Chr07	irgsp1_rep	CDS	2800871	2801059	.	+	0	Parent=Os07t0152900-04
Chr07	irgsp1_rep	three_prime_UTR	2801060	2801322	.	+	.	Parent=Os07t0152900-04
Chr07	irgsp1_rep	mRNA	2799025	2801038	.	-	.	ID=Os07t0152950-00;Name=Os07t0152950-00;Locus_id=Os07g0152950;Note=Hypothetical gene.;Transcript_evidence=BT066752 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0152950-00;KEGG=Os07t0152950-00
Chr07	irgsp1_rep	five_prime_UTR	2800820	2801038	.	-	.	Parent=Os07t0152950-00
Chr07	irgsp1_rep	CDS	2800574	2800819	.	-	0	Parent=Os07t0152950-00
Chr07	irgsp1_rep	three_prime_UTR	2800362	2800573	.	-	.	Parent=Os07t0152950-00
Chr07	irgsp1_rep	three_prime_UTR	2799286	2800249	.	-	.	Parent=Os07t0152950-00
Chr07	irgsp1_rep	three_prime_UTR	2799025	2799157	.	-	.	Parent=Os07t0152950-00
Chr07	irgsp1_rep	mRNA	2801928	2804209	.	-	.	ID=Os07t0153000-01;Name=Os07t0153000-01;Locus_id=Os07g0153000;RAP-DB Gene Symbol Synonym(s)=OsJAZ2%2C OsTIFY5;RAP-DB Gene Name Synonym(s)=Jasmonate ZIM-domain protein 2;CGSNL Gene Symbol=TIFY5;CGSNL Gene Name=TIFY GENE 5;Oryzabase Gene Symbol Synonym(s)=OsJAZ 2%2C OsJAZ2%2C JAZ2%2C OsTIFY5%2C OsSTA188;Oryzabase Gene Name Synonym(s)=Jasmonate ZIM-domain protein 2;Note=A member of the JASMONATE ZIM-domain (JAZ) family;Transcript_evidence=Inferred from literature;ORF_evidence=Q69NY7;InterPro=Tify domain (IPR010399),CO/COL/TOC1%2C conserved site (IPR018467);Manual Curation=July 8%2C 2020;Literature_PMID=19618278;Oryzabase=15072;TENOR=Os07t0153000-00
Chr07	irgsp1_rep	five_prime_UTR	2803979	2804209	.	-	.	Parent=Os07t0153000-01
Chr07	irgsp1_rep	CDS	2803793	2803978	.	-	0	Parent=Os07t0153000-01
Chr07	irgsp1_rep	CDS	2801928	2802299	.	-	0	Parent=Os07t0153000-01
Chr07	irgsp1_rep	mRNA	2806936	2815086	.	-	.	ID=Os07t0153150-01;Name=Os07t0153150-01;Locus_id=Os07g0153150;Note=Conserved hypothetical protein.;Transcript_evidence=AK318542 (DDBJ%2C Best hit);ORF_evidence=B9FJ66 (UniProt);NIAS_FLcDNA=J075088N21;Oryzabase=20003;TENOR=Os07t0153150-01
Chr07	irgsp1_rep	five_prime_UTR	2814709	2815086	.	-	.	Parent=Os07t0153150-01
Chr07	irgsp1_rep	five_prime_UTR	2814117	2814189	.	-	.	Parent=Os07t0153150-01
Chr07	irgsp1_rep	five_prime_UTR	2809869	2809938	.	-	.	Parent=Os07t0153150-01
Chr07	irgsp1_rep	CDS	2809606	2809868	.	-	0	Parent=Os07t0153150-01
Chr07	irgsp1_rep	CDS	2809121	2809341	.	-	1	Parent=Os07t0153150-01
Chr07	irgsp1_rep	CDS	2808933	2809036	.	-	2	Parent=Os07t0153150-01
Chr07	irgsp1_rep	three_prime_UTR	2808692	2808932	.	-	.	Parent=Os07t0153150-01
Chr07	irgsp1_rep	three_prime_UTR	2808487	2808615	.	-	.	Parent=Os07t0153150-01
Chr07	irgsp1_rep	three_prime_UTR	2808109	2808398	.	-	.	Parent=Os07t0153150-01
Chr07	irgsp1_rep	three_prime_UTR	2807952	2808029	.	-	.	Parent=Os07t0153150-01
Chr07	irgsp1_rep	three_prime_UTR	2807699	2807797	.	-	.	Parent=Os07t0153150-01
Chr07	irgsp1_rep	three_prime_UTR	2806936	2807461	.	-	.	Parent=Os07t0153150-01
Chr07	irgsp1_rep	mRNA	2806942	2809736	.	-	.	ID=Os07t0153150-02;Name=Os07t0153150-02;Locus_id=Os07g0153150;Note=Conserved hypothetical protein.;Transcript_evidence=AK241146 (DDBJ%2C Best hit);ORF_evidence=Q69NY6 (UniProt);NIAS_FLcDNA=J065112D19;Oryzabase=20003;TENOR=Os07t0153150-02
Chr07	irgsp1_rep	five_prime_UTR	2809606	2809736	.	-	.	Parent=Os07t0153150-02
Chr07	irgsp1_rep	five_prime_UTR	2809140	2809341	.	-	.	Parent=Os07t0153150-02
Chr07	irgsp1_rep	five_prime_UTR	2809004	2809037	.	-	.	Parent=Os07t0153150-02
Chr07	irgsp1_rep	CDS	2808692	2809003	.	-	0	Parent=Os07t0153150-02
Chr07	irgsp1_rep	CDS	2808487	2808615	.	-	0	Parent=Os07t0153150-02
Chr07	irgsp1_rep	CDS	2808064	2808414	.	-	0	Parent=Os07t0153150-02
Chr07	irgsp1_rep	three_prime_UTR	2807952	2808063	.	-	.	Parent=Os07t0153150-02
Chr07	irgsp1_rep	three_prime_UTR	2807699	2807797	.	-	.	Parent=Os07t0153150-02
Chr07	irgsp1_rep	three_prime_UTR	2806942	2807461	.	-	.	Parent=Os07t0153150-02
Chr07	irgsp1_rep	mRNA	2819047	2822940	.	-	.	ID=Os07t0153300-01;Name=Os07t0153300-01;Locus_id=Os07g0153300;Note=Protein of unknown function DUF1365 family protein.;Transcript_evidence=AK066146 (DDBJ%2C Best hit);ORF_evidence=B9FVJ7 (UniProt);InterPro=Protein of unknown function DUF1365 (IPR010775);NIAS_FLcDNA=J013056E09;Expression=AK066146;TENOR=Os07t0153300-01;KEGG=Os07t0153300-01
Chr07	irgsp1_rep	five_prime_UTR	2822913	2822940	.	-	.	Parent=Os07t0153300-01
Chr07	irgsp1_rep	CDS	2822837	2822912	.	-	0	Parent=Os07t0153300-01
Chr07	irgsp1_rep	CDS	2822614	2822683	.	-	2	Parent=Os07t0153300-01
Chr07	irgsp1_rep	CDS	2822003	2822120	.	-	1	Parent=Os07t0153300-01
Chr07	irgsp1_rep	CDS	2821822	2821914	.	-	0	Parent=Os07t0153300-01
Chr07	irgsp1_rep	CDS	2821270	2821542	.	-	0	Parent=Os07t0153300-01
Chr07	irgsp1_rep	three_prime_UTR	2819047	2821269	.	-	.	Parent=Os07t0153300-01
Chr07	irgsp1_rep	mRNA	2824369	2826637	.	-	.	ID=Os07t0153400-01;Name=Os07t0153400-01;Locus_id=Os07g0153400;Oryzabase Gene Symbol Synonym(s)=OsFbox340%2C Os_F0124;Oryzabase Gene Name Synonym(s)=F-box protein 340;Note=Kelch-type beta propeller domain containing protein.;Transcript_evidence=AK069618 (DDBJ%2C Best hit);ORF_evidence=XP_002893599.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Kelch repeat type 1 (IPR006652),Galactose oxidase%2C beta-propeller (IPR015916),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023025H16;Oryzabase=17116;Expression=AK069618;TENOR=Os07t0153400-01;KEGG=Os07t0153400-01
Chr07	irgsp1_rep	five_prime_UTR	2826455	2826637	.	-	.	Parent=Os07t0153400-01
Chr07	irgsp1_rep	five_prime_UTR	2825846	2825890	.	-	.	Parent=Os07t0153400-01
Chr07	irgsp1_rep	CDS	2824625	2825845	.	-	0	Parent=Os07t0153400-01
Chr07	irgsp1_rep	three_prime_UTR	2824369	2824624	.	-	.	Parent=Os07t0153400-01
Chr07	irgsp1_rep	mRNA	2839194	2840089	.	-	.	ID=Os07t0153600-01;Name=Os07t0153600-01;Locus_id=Os07g0153600;RAP-DB Gene Symbol Synonym(s)=PROG1%2C prog1;RAP-DB Gene Name Synonym(s)=PROSTRATE GROWTH 1%2C prostrate growth 1;CGSNL Gene Symbol=PROG1;CGSNL Gene Name=PROSTRATE GROWTH 1;Oryzabase Gene Symbol Synonym(s)=OsPROG1;Oryzabase Gene Name Synonym(s)=zinc-finger nuclear transcription factor PROG1;Note=Zinc-finger nuclear transcription factor%2C Control of prostrate growth%2C prog1 variants identified in O. sativa disrupt the prog1 function;Transcript_evidence=EU556723 (Teqing%2Cindica),FJ155665 (Oryza rufipogon);ORF_evidence=Q69NY0 (japonica),A2YI98 (indica),D9ZKN9 (Oryza rufipogon);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Zinc finger C2H2-type (IPR013087);Manual Curation=August 25%2C 2017;Literature_PMID=18820699;Oryzabase=8730;TENOR=Os07t0153600-00;KEGG=Os07t0153600-00;Subcellular location=nucleus (GO:0005634)
Chr07	irgsp1_rep	five_prime_UTR	2839980	2840089	.	-	.	Parent=Os07t0153600-01
Chr07	irgsp1_rep	CDS	2839476	2839979	.	-	0	Parent=Os07t0153600-01
Chr07	irgsp1_rep	three_prime_UTR	2839194	2839475	.	-	.	Parent=Os07t0153600-01
Chr07	irgsp1_rep	mRNA	2870686	2872829	.	+	.	ID=Os07t0154100-01;Name=Os07t0154100-01;Locus_id=Os07g0154100;CGSNL Gene Symbol=NCED3;CGSNL Gene Name=9-CIS-EPOXYCAROTENOID DIOXYGENASE 3;Oryzabase Gene Symbol Synonym(s)=OSNCED3%2C OsNCED-3%2C OsNCED3%2C OsNCED4%2C NCED4%2C OsNECD2;Oryzabase Gene Name Synonym(s)=9-cis-epoxycarotenoid dioxygenase 3;Note=Similar to Viviparous-14.;Transcript_evidence=AK119780 (DDBJ%2C Best hit);ORF_evidence=NP_001147781.1 (RefSeq);InterPro=Carotenoid oxygenase (IPR004294);NIAS_FLcDNA=002-173-D12;Oryzabase=7301;Expression=AK119780;TENOR=Os07t0154100-01;KEGG=Os07t0154100-01
Chr07	irgsp1_rep	five_prime_UTR	2870686	2870804	.	+	.	Parent=Os07t0154100-01
Chr07	irgsp1_rep	CDS	2870805	2872553	.	+	0	Parent=Os07t0154100-01
Chr07	irgsp1_rep	three_prime_UTR	2872554	2872829	.	+	.	Parent=Os07t0154100-01
Chr07	irgsp1_rep	mRNA	2871056	2872541	.	-	.	ID=Os07t0154201-00;Name=Os07t0154201-00;Locus_id=Os07g0154201;Note=Hypothetical gene.;Transcript_evidence=BT085311 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0154201-00
Chr07	irgsp1_rep	five_prime_UTR	2872214	2872541	.	-	.	Parent=Os07t0154201-00
Chr07	irgsp1_rep	five_prime_UTR	2871588	2872054	.	-	.	Parent=Os07t0154201-00
Chr07	irgsp1_rep	CDS	2871056	2871587	.	-	0	Parent=Os07t0154201-00
Chr07	irgsp1_rep	mRNA	2882267	2882849	.	+	.	ID=Os07t0154300-01;Name=Os07t0154300-01;Locus_id=Os07g0154300;Note=Conserved hypothetical protein.;Transcript_evidence=AK105386 (DDBJ%2C Best hit),AK122093 (DDBJ%2C Best hit);ORF_evidence=A2YIA2 (UniProt);NIAS_FLcDNA=001-121-H02,J033124K14;Expression=AK105386;TENOR=Os07t0154300-01;KEGG=Os07t0154300-01
Chr07	irgsp1_rep	five_prime_UTR	2882267	2882371	.	+	.	Parent=Os07t0154300-01
Chr07	irgsp1_rep	CDS	2882372	2882602	.	+	0	Parent=Os07t0154300-01
Chr07	irgsp1_rep	three_prime_UTR	2882603	2882849	.	+	.	Parent=Os07t0154300-01
Chr07	irgsp1_rep	mRNA	2885058	2892760	.	-	.	ID=Os07t0154400-01;Name=Os07t0154400-01;Locus_id=Os07g0154400;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=AK288457 (DDBJ%2C Best hit);ORF_evidence=B9FVJ8 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-type fold (IPR016024);NIAS_FLcDNA=J090035C01;TENOR=Os07t0154400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	2892648	2892760	.	-	.	Parent=Os07t0154400-01
Chr07	irgsp1_rep	CDS	2891901	2892647	.	-	0	Parent=Os07t0154400-01
Chr07	irgsp1_rep	CDS	2891557	2891811	.	-	0	Parent=Os07t0154400-01
Chr07	irgsp1_rep	CDS	2891252	2891464	.	-	0	Parent=Os07t0154400-01
Chr07	irgsp1_rep	CDS	2891021	2891152	.	-	0	Parent=Os07t0154400-01
Chr07	irgsp1_rep	CDS	2890273	2890402	.	-	0	Parent=Os07t0154400-01
Chr07	irgsp1_rep	CDS	2890150	2890196	.	-	2	Parent=Os07t0154400-01
Chr07	irgsp1_rep	CDS	2889968	2890069	.	-	0	Parent=Os07t0154400-01
Chr07	irgsp1_rep	CDS	2889747	2889854	.	-	0	Parent=Os07t0154400-01
Chr07	irgsp1_rep	CDS	2889089	2889231	.	-	0	Parent=Os07t0154400-01
Chr07	irgsp1_rep	CDS	2888839	2888933	.	-	1	Parent=Os07t0154400-01
Chr07	irgsp1_rep	CDS	2888643	2888724	.	-	2	Parent=Os07t0154400-01
Chr07	irgsp1_rep	CDS	2888494	2888545	.	-	1	Parent=Os07t0154400-01
Chr07	irgsp1_rep	CDS	2888337	2888417	.	-	0	Parent=Os07t0154400-01
Chr07	irgsp1_rep	CDS	2887670	2887765	.	-	0	Parent=Os07t0154400-01
Chr07	irgsp1_rep	CDS	2887481	2887584	.	-	0	Parent=Os07t0154400-01
Chr07	irgsp1_rep	CDS	2886633	2887089	.	-	1	Parent=Os07t0154400-01
Chr07	irgsp1_rep	CDS	2886446	2886481	.	-	0	Parent=Os07t0154400-01
Chr07	irgsp1_rep	CDS	2886159	2886366	.	-	0	Parent=Os07t0154400-01
Chr07	irgsp1_rep	CDS	2885903	2886032	.	-	2	Parent=Os07t0154400-01
Chr07	irgsp1_rep	CDS	2885354	2885378	.	-	1	Parent=Os07t0154400-01
Chr07	irgsp1_rep	three_prime_UTR	2885058	2885353	.	-	.	Parent=Os07t0154400-01
Chr07	irgsp1_rep	mRNA	2940398	2942804	.	-	.	ID=Os07t0154800-01;Name=Os07t0154800-01;Locus_id=Os07g0154800;Note=Conserved hypothetical protein.;Transcript_evidence=AK111389 (DDBJ%2C Best hit);ORF_evidence=B8B7D0 (UniProt);NIAS_FLcDNA=002-182-C03;Expression=AK111389;TENOR=Os07t0154800-01;KEGG=Os07t0154800-01
Chr07	irgsp1_rep	five_prime_UTR	2942733	2942804	.	-	.	Parent=Os07t0154800-01
Chr07	irgsp1_rep	five_prime_UTR	2942612	2942625	.	-	.	Parent=Os07t0154800-01
Chr07	irgsp1_rep	CDS	2942486	2942611	.	-	0	Parent=Os07t0154800-01
Chr07	irgsp1_rep	CDS	2940750	2940904	.	-	0	Parent=Os07t0154800-01
Chr07	irgsp1_rep	CDS	2940555	2940663	.	-	1	Parent=Os07t0154800-01
Chr07	irgsp1_rep	three_prime_UTR	2940398	2940554	.	-	.	Parent=Os07t0154800-01
Chr07	irgsp1_rep	mRNA	2943339	2943867	.	+	.	ID=Os07t0154900-01;Name=Os07t0154900-01;Locus_id=Os07g0154900;Note=Conserved hypothetical protein.;Transcript_evidence=AK062969 (DDBJ%2C Best hit);ORF_evidence=NP_001045425.1 (RefSeq);NIAS_FLcDNA=001-109-E02;TENOR=Os07t0154900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	2943339	2943339	.	+	.	Parent=Os07t0154900-01
Chr07	irgsp1_rep	CDS	2943340	2943552	.	+	0	Parent=Os07t0154900-01
Chr07	irgsp1_rep	three_prime_UTR	2943553	2943867	.	+	.	Parent=Os07t0154900-01
Chr07	irgsp1_rep	mRNA	2945227	2946683	.	+	.	ID=Os07t0155100-01;Name=Os07t0155100-01;Locus_id=Os07g0155100;Note=FAD dependent oxidoreductase family protein.;Transcript_evidence=AK105193 (DDBJ%2C Best hit);ORF_evidence=A0PFJ3 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FAD dependent oxidoreductase (IPR006076);NIAS_FLcDNA=001-107-D11;Expression=AK105193;TENOR=Os07t0155100-01;KEGG=Os07t0155100-01
Chr07	irgsp1_rep	five_prime_UTR	2945227	2945250	.	+	.	Parent=Os07t0155100-01
Chr07	irgsp1_rep	CDS	2945251	2946037	.	+	0	Parent=Os07t0155100-01
Chr07	irgsp1_rep	CDS	2946131	2946519	.	+	2	Parent=Os07t0155100-01
Chr07	irgsp1_rep	three_prime_UTR	2946520	2946683	.	+	.	Parent=Os07t0155100-01
Chr07	irgsp1_rep	mRNA	2946893	2949178	.	-	.	ID=Os07t0155200-01;Name=Os07t0155200-01;Locus_id=Os07g0155200;Note=Uncharacterised protein family UPF0090 domain containing protein.;Transcript_evidence=AK061006 (DDBJ%2C Best hit),AK104606 (DDBJ%2C Best hit);ORF_evidence=B8B7D2 (UniProt);InterPro=Ribosome maturation factor RimP (IPR003728);NIAS_FLcDNA=006-204-A05,006-309-B01;Expression=AK061006;TENOR=Os07t0155200-01;KEGG=Os07t0155200-01
Chr07	irgsp1_rep	five_prime_UTR	2949144	2949178	.	-	.	Parent=Os07t0155200-01
Chr07	irgsp1_rep	CDS	2948838	2949143	.	-	0	Parent=Os07t0155200-01
Chr07	irgsp1_rep	CDS	2948556	2948734	.	-	0	Parent=Os07t0155200-01
Chr07	irgsp1_rep	CDS	2947475	2947584	.	-	1	Parent=Os07t0155200-01
Chr07	irgsp1_rep	CDS	2947070	2947380	.	-	2	Parent=Os07t0155200-01
Chr07	irgsp1_rep	three_prime_UTR	2946893	2947069	.	-	.	Parent=Os07t0155200-01
Chr07	irgsp1_rep	mRNA	2984428	2990911	.	+	.	ID=Os07t0155600-01;Name=Os07t0155600-01;Locus_id=Os07g0155600;RAP-DB Gene Symbol Synonym(s)=EIN2%2C OsEIN2;RAP-DB Gene Name Synonym(s)=ETHYLENE-INSENSITIVE PROTEIN 2%2C Ethylene-insensitive protein 2;CGSNL Gene Symbol=EIN2;CGSNL Gene Name=ETHYLENE-INSENSITIVE PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsEIN2%2C MHZ7/OsEIN2%2C OsEIN2/MHZ7%2C MHZ7;Oryzabase Gene Name Synonym(s)=Ethylene-insensitive protein 2%2C maohuzi7%2C maohuzi 7;Note=Nramp ion-transporter family protein%2C Ethylene signaling pathway;Transcript_evidence=AY396568 (DDBJ);ORF_evidence=Q6TJY0 (UniProt),Q0D8I9 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Natural resistance-associated macrophage protein (IPR001046),Ethylene-insensitive 2 (IPR017187);Manual Curation=July 26%2C 2010;Literature_PMID=15047876;Oryzabase=3070;TENOR=Os07t0155600-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	2984428	2984747	.	+	.	Parent=Os07t0155600-01
Chr07	irgsp1_rep	CDS	2984748	2985023	.	+	0	Parent=Os07t0155600-01
Chr07	irgsp1_rep	CDS	2985566	2985652	.	+	0	Parent=Os07t0155600-01
Chr07	irgsp1_rep	CDS	2985774	2985887	.	+	0	Parent=Os07t0155600-01
Chr07	irgsp1_rep	CDS	2985986	2986198	.	+	0	Parent=Os07t0155600-01
Chr07	irgsp1_rep	CDS	2987064	2987240	.	+	0	Parent=Os07t0155600-01
Chr07	irgsp1_rep	CDS	2987359	2990016	.	+	0	Parent=Os07t0155600-01
Chr07	irgsp1_rep	CDS	2990159	2990479	.	+	0	Parent=Os07t0155600-01
Chr07	irgsp1_rep	three_prime_UTR	2990480	2990911	.	+	.	Parent=Os07t0155600-01
Chr07	irgsp1_rep	mRNA	3011373	3014163	.	+	.	ID=Os07t0156200-00;Name=Os07t0156200-00;Locus_id=Os07g0156200;Oryzabase Gene Symbol Synonym(s)=prx99;Oryzabase Gene Name Synonym(s)=class III peroxidase 99;Note=Haem peroxidase%2C plant/fungal/bacterial family protein.;Transcript_evidence=AK249509 (DDBJ);ORF_evidence=NP_001152255.1 (RefSeq);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);Oryzabase=14622;TENOR=Os07t0156200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	3011373	3011441	.	+	.	Parent=Os07t0156200-00
Chr07	irgsp1_rep	CDS	3011442	3011666	.	+	0	Parent=Os07t0156200-00
Chr07	irgsp1_rep	CDS	3013342	3014163	.	+	0	Parent=Os07t0156200-00
Chr07	irgsp1_rep	mRNA	3016440	3017585	.	+	.	ID=Os07t0156467-00;Name=Os07t0156467-00;Locus_id=Os07g0156467;Note=Similar to Class III peroxidase 7.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5U1T6 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);TENOR=Os07t0156467-00
Chr07	irgsp1_rep	CDS	3016440	3016655	.	+	0	Parent=Os07t0156467-00
Chr07	irgsp1_rep	CDS	3016836	3017585	.	+	0	Parent=Os07t0156467-00
Chr07	irgsp1_rep	mRNA	3022041	3024426	.	+	.	ID=Os07t0156732-01;Name=Os07t0156732-01;Locus_id=Os07g0156732;Oryzabase Gene Symbol Synonym(s)=OsEIN2.4%2C EIN2.4;Oryzabase Gene Name Synonym(s)=Ethylene-insensitive protein 2.4;Note=Similar to EIN2.;Transcript_evidence=AK111802 (DDBJ%2C Best hit);ORF_evidence=Q6TJY0 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Natural resistance-associated macrophage protein (IPR001046),Ethylene-insensitive 2 (IPR017187);NIAS_FLcDNA=J013072G02;Oryzabase=22548;Expression=AK111802;TENOR=Os07t0156732-01;KEGG=Os07t0156732-01
Chr07	irgsp1_rep	CDS	3022041	3023531	.	+	0	Parent=Os07t0156732-01
Chr07	irgsp1_rep	CDS	3023674	3023994	.	+	0	Parent=Os07t0156732-01
Chr07	irgsp1_rep	three_prime_UTR	3023995	3024426	.	+	.	Parent=Os07t0156732-01
Chr07	irgsp1_rep	mRNA	3059132	3059407	.	+	.	ID=Os07t0156910-00;Name=Os07t0156910-00;Locus_id=Os07g0156910;Note=Similar to peroxidase 1.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001152255.1 (RefSeq);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255);TENOR=Os07t0156910-00
Chr07	irgsp1_rep	CDS	3059132	3059407	.	+	0	Parent=Os07t0156910-00
Chr07	irgsp1_rep	mRNA	3061684	3062830	.	+	.	ID=Os07t0157000-00;Name=Os07t0157000-00;Locus_id=Os07g0157000;Oryzabase Gene Symbol Synonym(s)=prx7;Oryzabase Gene Name Synonym(s)=class III peroxidase 7;Note=Similar to Class III peroxidase 7.;Transcript_evidence=FP094284 (DDBJ);ORF_evidence=Q5U1T6 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);Oryzabase=14536;TENOR=Os07t0157000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	3061684	3061899	.	+	0	Parent=Os07t0157000-00
Chr07	irgsp1_rep	CDS	3062080	3062829	.	+	0	Parent=Os07t0157000-00
Chr07	irgsp1_rep	three_prime_UTR	3062830	3062830	.	+	.	Parent=Os07t0157000-00
Chr07	irgsp1_rep	mRNA	3067285	3069670	.	+	.	ID=Os07t0157401-01;Name=Os07t0157401-01;Locus_id=Os07g0157401;Oryzabase Gene Symbol Synonym(s)=OsEIN2.3%2C EIN2.3;Oryzabase Gene Name Synonym(s)=Ethylene-insensitive protein 2.3;Note=Similar to EIN2.;Transcript_evidence=AK111802 (DDBJ%2C Best hit);ORF_evidence=Q6TJY0 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Natural resistance-associated macrophage protein (IPR001046),Ethylene-insensitive 2 (IPR017187);NIAS_FLcDNA=J013072G02;Oryzabase=22547;Expression=AK111802;TENOR=Os07t0157401-01;KEGG=Os07t0157401-01
Chr07	irgsp1_rep	CDS	3067285	3068775	.	+	0	Parent=Os07t0157401-01
Chr07	irgsp1_rep	CDS	3068918	3069238	.	+	0	Parent=Os07t0157401-01
Chr07	irgsp1_rep	three_prime_UTR	3069239	3069670	.	+	.	Parent=Os07t0157401-01
Chr07	irgsp1_rep	mRNA	3090132	3104241	.	+	.	ID=Os07t0157600-00;Name=Os07t0157600-00;Locus_id=Os07g0157600;Note=Similar to peroxidase 1.;Transcript_evidence=AK252026 (DDBJ);ORF_evidence=NP_001152255.1 (RefSeq);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);TENOR=Os07t0157600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	3090132	3090291	.	+	.	Parent=Os07t0157600-00
Chr07	irgsp1_rep	CDS	3090292	3090363	.	+	0	Parent=Os07t0157600-00
Chr07	irgsp1_rep	CDS	3101671	3101727	.	+	0	Parent=Os07t0157600-00
Chr07	irgsp1_rep	CDS	3103420	3104241	.	+	0	Parent=Os07t0157600-00
Chr07	irgsp1_rep	mRNA	3105286	3109490	.	-	.	ID=Os07t0157700-01;Name=Os07t0157700-01;Locus_id=Os07g0157700;Note=Conserved hypothetical protein.;Transcript_evidence=AK069862 (DDBJ%2C Best hit);ORF_evidence=B8B7D5 (UniProt);NIAS_FLcDNA=J023039K07;TENOR=Os07t0157700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	3109332	3109490	.	-	.	Parent=Os07t0157700-01
Chr07	irgsp1_rep	five_prime_UTR	3109157	3109228	.	-	.	Parent=Os07t0157700-01
Chr07	irgsp1_rep	five_prime_UTR	3108953	3109054	.	-	.	Parent=Os07t0157700-01
Chr07	irgsp1_rep	five_prime_UTR	3108596	3108618	.	-	.	Parent=Os07t0157700-01
Chr07	irgsp1_rep	CDS	3108541	3108595	.	-	0	Parent=Os07t0157700-01
Chr07	irgsp1_rep	CDS	3107414	3107588	.	-	2	Parent=Os07t0157700-01
Chr07	irgsp1_rep	CDS	3107060	3107219	.	-	1	Parent=Os07t0157700-01
Chr07	irgsp1_rep	three_prime_UTR	3106444	3107059	.	-	.	Parent=Os07t0157700-01
Chr07	irgsp1_rep	three_prime_UTR	3105286	3105865	.	-	.	Parent=Os07t0157700-01
Chr07	irgsp1_rep	mRNA	3111642	3113960	.	+	.	ID=Os07t0157900-01;Name=Os07t0157900-01;Locus_id=Os07g0157900;Note=Deoxyribonuclease%2C TatD domain containing protein.;Transcript_evidence=AK067778 (DDBJ%2C Best hit);ORF_evidence=B6TDE6 (UniProt);GO=Molecular Function: endodeoxyribonuclease activity%2C producing 5'-phosphomonoesters (GO:0016888);InterPro=Deoxyribonuclease%2C TatD-related (IPR001130),Deoxyribonuclease%2C TatD (IPR015992);NIAS_FLcDNA=J013114E17;TENOR=Os07t0157900-01;KEGG=Os07t0157900-01 (EC:3.1.21.-)
Chr07	irgsp1_rep	five_prime_UTR	3111642	3111685	.	+	.	Parent=Os07t0157900-01
Chr07	irgsp1_rep	CDS	3111686	3111712	.	+	0	Parent=Os07t0157900-01
Chr07	irgsp1_rep	CDS	3111844	3111865	.	+	0	Parent=Os07t0157900-01
Chr07	irgsp1_rep	CDS	3111984	3112250	.	+	2	Parent=Os07t0157900-01
Chr07	irgsp1_rep	CDS	3112360	3112403	.	+	2	Parent=Os07t0157900-01
Chr07	irgsp1_rep	CDS	3112489	3112506	.	+	0	Parent=Os07t0157900-01
Chr07	irgsp1_rep	three_prime_UTR	3112507	3112587	.	+	.	Parent=Os07t0157900-01
Chr07	irgsp1_rep	three_prime_UTR	3113183	3113253	.	+	.	Parent=Os07t0157900-01
Chr07	irgsp1_rep	three_prime_UTR	3113327	3113437	.	+	.	Parent=Os07t0157900-01
Chr07	irgsp1_rep	three_prime_UTR	3113670	3113960	.	+	.	Parent=Os07t0157900-01
Chr07	irgsp1_rep	mRNA	3115457	3115869	.	+	.	ID=Os07t0158000-00;Name=Os07t0158000-00;Locus_id=Os07g0158000;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A3BGQ5 (UniProt);TENOR=Os07t0158000-00;KEGG=Os07t0158000-00
Chr07	irgsp1_rep	CDS	3115457	3115613	.	+	0	Parent=Os07t0158000-00
Chr07	irgsp1_rep	CDS	3115673	3115869	.	+	2	Parent=Os07t0158000-00
Chr07	irgsp1_rep	mRNA	3115347	3116009	.	-	.	ID=Os07t0158100-01;Name=Os07t0158100-01;Locus_id=Os07g0158100;Note=Hypothetical gene.;Transcript_evidence=AK108021 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-136-A03;Expression=AK108021;TENOR=Os07t0158100-01;KEGG=Os07t0158100-01
Chr07	irgsp1_rep	five_prime_UTR	3115612	3116009	.	-	.	Parent=Os07t0158100-01
Chr07	irgsp1_rep	CDS	3115381	3115611	.	-	0	Parent=Os07t0158100-01
Chr07	irgsp1_rep	three_prime_UTR	3115347	3115380	.	-	.	Parent=Os07t0158100-01
Chr07	irgsp1_rep	mRNA	3118819	3122484	.	+	.	ID=Os07t0158200-01;Name=Os07t0158200-01;Locus_id=Os07g0158200;Note=Deoxyribonuclease%2C TatD Mg-dependent domain containing protein.;Transcript_evidence=AK103591 (DDBJ%2C Best hit),AK103532 (DDBJ%2C Best hit);ORF_evidence=B6TDE6 (UniProt);GO=Molecular Function: endodeoxyribonuclease activity%2C producing 5'-phosphomonoesters (GO:0016888);InterPro=Deoxyribonuclease%2C TatD-related (IPR001130),Deoxyribonuclease%2C TatD Mg-dependent (IPR012278),Deoxyribonuclease%2C TatD (IPR015992),Deoxyribonuclease%2C TatD-related%2C conserved site (IPR018228);NIAS_FLcDNA=J033133D05,J033132A09;Expression=AK103532;TENOR=Os07t0158200-01;KEGG=Os07t0158200-01 (EC:3.1.21.-)
Chr07	irgsp1_rep	five_prime_UTR	3118819	3118906	.	+	.	Parent=Os07t0158200-01
Chr07	irgsp1_rep	CDS	3118907	3118933	.	+	0	Parent=Os07t0158200-01
Chr07	irgsp1_rep	CDS	3119069	3119090	.	+	0	Parent=Os07t0158200-01
Chr07	irgsp1_rep	CDS	3119209	3119309	.	+	2	Parent=Os07t0158200-01
Chr07	irgsp1_rep	CDS	3119433	3119490	.	+	0	Parent=Os07t0158200-01
Chr07	irgsp1_rep	CDS	3119600	3119643	.	+	2	Parent=Os07t0158200-01
Chr07	irgsp1_rep	CDS	3119747	3119827	.	+	0	Parent=Os07t0158200-01
Chr07	irgsp1_rep	CDS	3120530	3120600	.	+	0	Parent=Os07t0158200-01
Chr07	irgsp1_rep	CDS	3120675	3120785	.	+	1	Parent=Os07t0158200-01
Chr07	irgsp1_rep	CDS	3120997	3121079	.	+	1	Parent=Os07t0158200-01
Chr07	irgsp1_rep	CDS	3121337	3121553	.	+	2	Parent=Os07t0158200-01
Chr07	irgsp1_rep	CDS	3122017	3122100	.	+	1	Parent=Os07t0158200-01
Chr07	irgsp1_rep	CDS	3122271	3122346	.	+	1	Parent=Os07t0158200-01
Chr07	irgsp1_rep	three_prime_UTR	3122347	3122484	.	+	.	Parent=Os07t0158200-01
Chr07	irgsp1_rep	mRNA	3122638	3124603	.	-	.	ID=Os07t0158300-01;Name=Os07t0158300-01;Locus_id=Os07g0158300;Note=Similar to RNA binding protein.;Transcript_evidence=AK067376 (DDBJ%2C Best hit),AK099188 (DDBJ%2C Best hit),AK104773 (DDBJ%2C Best hit);ORF_evidence=O81989 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013106F16,J023110K07,001-039-B02;Expression=AK067376;TENOR=Os07t0158300-01;KEGG=Os07t0158300-01
Chr07	irgsp1_rep	five_prime_UTR	3124602	3124603	.	-	.	Parent=Os07t0158300-01
Chr07	irgsp1_rep	CDS	3124110	3124601	.	-	0	Parent=Os07t0158300-01
Chr07	irgsp1_rep	CDS	3123910	3124011	.	-	0	Parent=Os07t0158300-01
Chr07	irgsp1_rep	CDS	3123476	3123781	.	-	0	Parent=Os07t0158300-01
Chr07	irgsp1_rep	CDS	3122928	3123122	.	-	0	Parent=Os07t0158300-01
Chr07	irgsp1_rep	three_prime_UTR	3122638	3122927	.	-	.	Parent=Os07t0158300-01
Chr07	irgsp1_rep	mRNA	3124926	3125729	.	+	.	ID=Os07t0158400-00;Name=Os07t0158400-00;Locus_id=Os07g0158400;Note=Hypothetical conserved gene.;Transcript_evidence=EU966727 (DDBJ);ORF_evidence=Q9LMF3 (UniProt);InterPro=GCK (IPR012891);TENOR=Os07t0158400-00;KEGG=Os07t0158400-00
Chr07	irgsp1_rep	five_prime_UTR	3124926	3124943	.	+	.	Parent=Os07t0158400-00
Chr07	irgsp1_rep	CDS	3124944	3125522	.	+	0	Parent=Os07t0158400-00
Chr07	irgsp1_rep	three_prime_UTR	3125523	3125729	.	+	.	Parent=Os07t0158400-00
Chr07	irgsp1_rep	mRNA	3127749	3130514	.	-	.	ID=Os07t0158500-00;Name=Os07t0158500-00;Locus_id=Os07g0158500;CGSNL Gene Symbol=HAP2J;CGSNL Gene Name=HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX;Oryzabase Gene Symbol Synonym(s)=OsHAP2J%2C NF-YA%2C CBF-B%2C NF-YA5%2C OsNF-YA5%2C NFYA5;Oryzabase Gene Name Synonym(s)=NUCLEAR FACTOR-Y subunit A5%2C NUCLEAR FACTOR-Y subunit NF-YA5%2C NF-YA transcription factor 5%2C NF-YA subunit 5%2C NF-YA family 5;Note=Similar to HAP2 subunit of HAP complex.;Transcript_evidence=FP101566 (DDBJ);ORF_evidence=B0S4T5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Cellular Component: CCAAT-binding factor complex (GO:0016602),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=CCAAT-binding transcription factor%2C subunit B (IPR001289),CCAAT-binding factor%2C conserved site (IPR018362);Oryzabase=8482;TENOR=Os07t0158500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	3130094	3130514	.	-	0	Parent=Os07t0158500-00
Chr07	irgsp1_rep	CDS	3128920	3129038	.	-	2	Parent=Os07t0158500-00
Chr07	irgsp1_rep	CDS	3128751	3128819	.	-	0	Parent=Os07t0158500-00
Chr07	irgsp1_rep	CDS	3128432	3128575	.	-	0	Parent=Os07t0158500-00
Chr07	irgsp1_rep	CDS	3127907	3128293	.	-	0	Parent=Os07t0158500-00
Chr07	irgsp1_rep	three_prime_UTR	3127749	3127906	.	-	.	Parent=Os07t0158500-00
Chr07	irgsp1_rep	mRNA	3150258	3152643	.	-	.	ID=Os07t0158800-01;Name=Os07t0158800-01;Locus_id=Os07g0158800;Note=Protein of unknown function DUF266%2C plant family protein.;Transcript_evidence=AK106452 (DDBJ%2C Best hit);ORF_evidence=A2YIC2 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: acetylglucosaminyltransferase activity (GO:0008375);InterPro=Glycosyl transferase%2C family 14 (IPR003406);NIAS_FLcDNA=002-103-F02;Expression=AK106452;TENOR=Os07t0158800-01;KEGG=Os07t0158800-01
Chr07	irgsp1_rep	five_prime_UTR	3152489	3152643	.	-	.	Parent=Os07t0158800-01
Chr07	irgsp1_rep	CDS	3151409	3152488	.	-	0	Parent=Os07t0158800-01
Chr07	irgsp1_rep	three_prime_UTR	3151379	3151408	.	-	.	Parent=Os07t0158800-01
Chr07	irgsp1_rep	three_prime_UTR	3150258	3150644	.	-	.	Parent=Os07t0158800-01
Chr07	irgsp1_rep	mRNA	3153690	3157109	.	-	.	ID=Os07t0158900-01;Name=Os07t0158900-01;Locus_id=Os07g0158900;Oryzabase Gene Symbol Synonym(s)=OsFbox341%2C Fbox341%2C Os_F0215;Oryzabase Gene Name Synonym(s)=F-box protein 341;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK064980 (DDBJ%2C Best hit);ORF_evidence=A2YIC3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013001C06;Oryzabase=17117;Expression=AK064980;TENOR=Os07t0158900-01;KEGG=Os07t0158900-01
Chr07	irgsp1_rep	five_prime_UTR	3156729	3157109	.	-	.	Parent=Os07t0158900-01
Chr07	irgsp1_rep	five_prime_UTR	3156390	3156500	.	-	.	Parent=Os07t0158900-01
Chr07	irgsp1_rep	CDS	3156327	3156389	.	-	0	Parent=Os07t0158900-01
Chr07	irgsp1_rep	CDS	3155389	3156246	.	-	0	Parent=Os07t0158900-01
Chr07	irgsp1_rep	CDS	3155134	3155286	.	-	0	Parent=Os07t0158900-01
Chr07	irgsp1_rep	CDS	3153941	3154357	.	-	0	Parent=Os07t0158900-01
Chr07	irgsp1_rep	three_prime_UTR	3153690	3153940	.	-	.	Parent=Os07t0158900-01
Chr07	irgsp1_rep	mRNA	3153597	3155859	.	-	.	ID=Os07t0158900-02;Name=Os07t0158900-02;Locus_id=Os07g0158900;Oryzabase Gene Symbol Synonym(s)=OsFbox341%2C Fbox341%2C Os_F0215;Oryzabase Gene Name Synonym(s)=F-box protein 341;Note=Hypothetical conserved gene.;Transcript_evidence=AK060772 (DDBJ%2C Best hit);ORF_evidence=A3BGR3 (UniProt);NIAS_FLcDNA=001-033-B05;Oryzabase=17117;Expression=AK060772;TENOR=Os07t0158900-02;KEGG=Os07t0158900-02
Chr07	irgsp1_rep	CDS	3155389	3155859	.	-	0	Parent=Os07t0158900-02
Chr07	irgsp1_rep	CDS	3155134	3155286	.	-	0	Parent=Os07t0158900-02
Chr07	irgsp1_rep	CDS	3153941	3154357	.	-	0	Parent=Os07t0158900-02
Chr07	irgsp1_rep	three_prime_UTR	3153597	3153940	.	-	.	Parent=Os07t0158900-02
Chr07	irgsp1_rep	mRNA	3168032	3170244	.	+	.	ID=Os07t0159200-01;Name=Os07t0159200-01;Locus_id=Os07g0159200;Note=Conserved hypothetical protein.;Transcript_evidence=AK107811 (DDBJ%2C Best hit);ORF_evidence=NP_001175751.1 (RefSeq);NIAS_FLcDNA=002-133-F01;TENOR=Os07t0159200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	3168032	3168032	.	+	.	Parent=Os07t0159200-01
Chr07	irgsp1_rep	CDS	3168033	3168135	.	+	0	Parent=Os07t0159200-01
Chr07	irgsp1_rep	CDS	3169174	3169229	.	+	2	Parent=Os07t0159200-01
Chr07	irgsp1_rep	three_prime_UTR	3169230	3169292	.	+	.	Parent=Os07t0159200-01
Chr07	irgsp1_rep	three_prime_UTR	3169971	3170244	.	+	.	Parent=Os07t0159200-01
Chr07	irgsp1_rep	mRNA	3183342	3187245	.	-	.	ID=Os07t0159500-01;Name=Os07t0159500-01;Locus_id=Os07g0159500;Note=Conserved hypothetical protein.;Transcript_evidence=AK065419 (DDBJ%2C Best hit);ORF_evidence=B9FVK8 (UniProt);NIAS_FLcDNA=J013021B09;TENOR=Os07t0159500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	3187047	3187245	.	-	.	Parent=Os07t0159500-01
Chr07	irgsp1_rep	CDS	3186919	3187046	.	-	0	Parent=Os07t0159500-01
Chr07	irgsp1_rep	CDS	3185045	3185189	.	-	1	Parent=Os07t0159500-01
Chr07	irgsp1_rep	CDS	3184634	3184960	.	-	0	Parent=Os07t0159500-01
Chr07	irgsp1_rep	CDS	3183599	3184240	.	-	0	Parent=Os07t0159500-01
Chr07	irgsp1_rep	three_prime_UTR	3183342	3183598	.	-	.	Parent=Os07t0159500-01
Chr07	irgsp1_rep	mRNA	3184790	3187148	.	+	.	ID=Os07t0159550-01;Name=Os07t0159550-01;Locus_id=Os07g0159550;Note=Hypothetical gene.;Transcript_evidence=AK288669 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090058N18;TENOR=Os07t0159550-01;KEGG=Os07t0159550-01
Chr07	irgsp1_rep	five_prime_UTR	3184790	3186215	.	+	.	Parent=Os07t0159550-01
Chr07	irgsp1_rep	CDS	3186216	3186473	.	+	0	Parent=Os07t0159550-01
Chr07	irgsp1_rep	three_prime_UTR	3186474	3187148	.	+	.	Parent=Os07t0159550-01
Chr07	irgsp1_rep	mRNA	3188806	3189565	.	+	.	ID=Os07t0159600-00;Name=Os07t0159600-00;Locus_id=Os07g0159600;Note=Similar to RING-H2 finger protein ATL2I.;Transcript_evidence=CT837653 (DDBJ%2C Best hit);ORF_evidence=NP_001151304.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os07t0159600-00;KEGG=Os07t0159600-00
Chr07	irgsp1_rep	five_prime_UTR	3188806	3188835	.	+	.	Parent=Os07t0159600-00
Chr07	irgsp1_rep	CDS	3188836	3189384	.	+	0	Parent=Os07t0159600-00
Chr07	irgsp1_rep	three_prime_UTR	3189385	3189565	.	+	.	Parent=Os07t0159600-00
Chr07	irgsp1_rep	mRNA	3190314	3191901	.	-	.	ID=Os07t0159700-00;Name=Os07t0159700-00;Locus_id=Os07g0159700;CGSNL Gene Symbol=RLCK223;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 223;Oryzabase Gene Symbol Synonym(s)=OsRLCK223;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 223;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=BT061615 (DDBJ);ORF_evidence=Q7XIM8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18918;TENOR=Os07t0159700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	3191480	3191901	.	-	0	Parent=Os07t0159700-00
Chr07	irgsp1_rep	CDS	3191309	3191361	.	-	1	Parent=Os07t0159700-00
Chr07	irgsp1_rep	CDS	3191150	3191217	.	-	2	Parent=Os07t0159700-00
Chr07	irgsp1_rep	CDS	3190844	3190997	.	-	0	Parent=Os07t0159700-00
Chr07	irgsp1_rep	CDS	3190314	3190645	.	-	2	Parent=Os07t0159700-00
Chr07	irgsp1_rep	mRNA	3198843	3201735	.	+	.	ID=Os07t0159800-01;Name=Os07t0159800-01;Locus_id=Os07g0159800;Note=MD-2-related lipid-recognition domain containing protein.;Transcript_evidence=AK060475 (DDBJ%2C Best hit);ORF_evidence=B6TM82 (UniProt);InterPro=MD-2-related lipid-recognition (IPR003172),Immunoglobulin E-set (IPR014756);NIAS_FLcDNA=001-012-F03;Expression=AK060475;TENOR=Os07t0159800-01;KEGG=Os07t0159800-01
Chr07	irgsp1_rep	five_prime_UTR	3198843	3198872	.	+	.	Parent=Os07t0159800-01
Chr07	irgsp1_rep	CDS	3198873	3198963	.	+	0	Parent=Os07t0159800-01
Chr07	irgsp1_rep	CDS	3199089	3199190	.	+	2	Parent=Os07t0159800-01
Chr07	irgsp1_rep	CDS	3201156	3201313	.	+	2	Parent=Os07t0159800-01
Chr07	irgsp1_rep	CDS	3201456	3201563	.	+	0	Parent=Os07t0159800-01
Chr07	irgsp1_rep	three_prime_UTR	3201564	3201735	.	+	.	Parent=Os07t0159800-01
Chr07	irgsp1_rep	mRNA	3199137	3201809	.	+	.	ID=Os07t0159800-02;Name=Os07t0159800-02;Locus_id=Os07g0159800;Note=Similar to ML domain protein.;Transcript_evidence=AK059284 (DDBJ%2C Best hit);ORF_evidence=B6TM82 (UniProt);InterPro=MD-2-related lipid-recognition (IPR003172),Immunoglobulin E-set (IPR014756);NIAS_FLcDNA=001-025-D07;Expression=AK059284;TENOR=Os07t0159800-02;KEGG=Os07t0159800-02
Chr07	irgsp1_rep	five_prime_UTR	3199137	3199138	.	+	.	Parent=Os07t0159800-02
Chr07	irgsp1_rep	CDS	3199139	3199190	.	+	0	Parent=Os07t0159800-02
Chr07	irgsp1_rep	CDS	3201156	3201313	.	+	2	Parent=Os07t0159800-02
Chr07	irgsp1_rep	CDS	3201456	3201563	.	+	0	Parent=Os07t0159800-02
Chr07	irgsp1_rep	three_prime_UTR	3201564	3201809	.	+	.	Parent=Os07t0159800-02
Chr07	irgsp1_rep	mRNA	3203068	3204153	.	+	.	ID=Os07t0159900-01;Name=Os07t0159900-01;Locus_id=Os07g0159900;Oryzabase Gene Symbol Synonym(s)=OsGRL14;Oryzabase Gene Name Synonym(s)=GRX-like protein 14%2C glutaredoxin-like protein 14;Note=Thioredoxin fold domain containing protein.;Transcript_evidence=AK062586 (DDBJ%2C Best hit);ORF_evidence=A2YID0 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin (IPR002109),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=001-100-F04;Oryzabase=13604;Expression=AK062586;TENOR=Os07t0159900-01;KEGG=Os07t0159900-01
Chr07	irgsp1_rep	five_prime_UTR	3203068	3203185	.	+	.	Parent=Os07t0159900-01
Chr07	irgsp1_rep	CDS	3203186	3203956	.	+	0	Parent=Os07t0159900-01
Chr07	irgsp1_rep	three_prime_UTR	3203957	3204153	.	+	.	Parent=Os07t0159900-01
Chr07	irgsp1_rep	mRNA	3207022	3214064	.	+	.	ID=Os07t0160000-00;Name=Os07t0160000-00;Locus_id=Os07g0160000;CGSNL Gene Symbol=UBP4-2;CGSNL Gene Name=UBIQUITIN-SPECIFIC PROCESSING PROTEASE 4-2;Oryzabase Gene Symbol Synonym(s)=OsUBP4-2%2C OsUBP10%2C UBP10;Oryzabase Gene Name Synonym(s)=ubiquitin-specific processing protease 4-2%2C Ubiquitin-specific protease 10;Note=Similar to Ubiquitin carboxyl-terminal hydrolase.;Transcript_evidence=AK373562 (DDBJ);ORF_evidence=B9FVK9 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Molecular Function: ubiquitin thiolesterase activity (GO:0004221);InterPro=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (IPR001394),Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2%2C conserved site (IPR018200);Oryzabase=22877;TENOR=Os07t0160000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	3207022	3207121	.	+	.	Parent=Os07t0160000-00
Chr07	irgsp1_rep	CDS	3207122	3207234	.	+	0	Parent=Os07t0160000-00
Chr07	irgsp1_rep	CDS	3207320	3207550	.	+	1	Parent=Os07t0160000-00
Chr07	irgsp1_rep	CDS	3210364	3210490	.	+	1	Parent=Os07t0160000-00
Chr07	irgsp1_rep	CDS	3210577	3210636	.	+	0	Parent=Os07t0160000-00
Chr07	irgsp1_rep	CDS	3210716	3210808	.	+	0	Parent=Os07t0160000-00
Chr07	irgsp1_rep	CDS	3210921	3211217	.	+	0	Parent=Os07t0160000-00
Chr07	irgsp1_rep	CDS	3211298	3211609	.	+	0	Parent=Os07t0160000-00
Chr07	irgsp1_rep	CDS	3211705	3211962	.	+	0	Parent=Os07t0160000-00
Chr07	irgsp1_rep	CDS	3212075	3212223	.	+	0	Parent=Os07t0160000-00
Chr07	irgsp1_rep	CDS	3212318	3212950	.	+	1	Parent=Os07t0160000-00
Chr07	irgsp1_rep	CDS	3213215	3213488	.	+	1	Parent=Os07t0160000-00
Chr07	irgsp1_rep	CDS	3213584	3213694	.	+	0	Parent=Os07t0160000-00
Chr07	irgsp1_rep	three_prime_UTR	3213695	3214064	.	+	.	Parent=Os07t0160000-00
Chr07	irgsp1_rep	mRNA	3207062	3214083	.	-	.	ID=Os07t0160050-00;Name=Os07t0160050-00;Locus_id=Os07g0160050;Note=Hypothetical protein.;Transcript_evidence=tplb0053f14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0160050-00
Chr07	irgsp1_rep	five_prime_UTR	3213587	3214083	.	-	.	Parent=Os07t0160050-00
Chr07	irgsp1_rep	five_prime_UTR	3213214	3213488	.	-	.	Parent=Os07t0160050-00
Chr07	irgsp1_rep	five_prime_UTR	3212342	3212949	.	-	.	Parent=Os07t0160050-00
Chr07	irgsp1_rep	five_prime_UTR	3212084	3212249	.	-	.	Parent=Os07t0160050-00
Chr07	irgsp1_rep	five_prime_UTR	3211714	3211967	.	-	.	Parent=Os07t0160050-00
Chr07	irgsp1_rep	five_prime_UTR	3211294	3211616	.	-	.	Parent=Os07t0160050-00
Chr07	irgsp1_rep	five_prime_UTR	3210998	3211211	.	-	.	Parent=Os07t0160050-00
Chr07	irgsp1_rep	five_prime_UTR	3210678	3210841	.	-	.	Parent=Os07t0160050-00
Chr07	irgsp1_rep	five_prime_UTR	3210398	3210523	.	-	.	Parent=Os07t0160050-00
Chr07	irgsp1_rep	CDS	3210341	3210397	.	-	0	Parent=Os07t0160050-00
Chr07	irgsp1_rep	CDS	3207317	3207530	.	-	0	Parent=Os07t0160050-00
Chr07	irgsp1_rep	CDS	3207065	3207231	.	-	2	Parent=Os07t0160050-00
Chr07	irgsp1_rep	three_prime_UTR	3207062	3207064	.	-	.	Parent=Os07t0160050-00
Chr07	irgsp1_rep	mRNA	3219923	3224754	.	+	.	ID=Os07t0160100-01;Name=Os07t0160100-01;Locus_id=Os07g0160100;CGSNL Gene Symbol=YAB1;CGSNL Gene Name=YABBY1;Oryzabase Gene Symbol Synonym(s)=OsYAB1%2C FIL1%2C osFIL1;Oryzabase Gene Name Synonym(s)=YABBY1 gene%2C YABBY 1%2C OsYABBY1%2C Os YABBY1%2C FILAMENTOUS FLOWER 1%2C Protein YABBY 1%2C Protein FILAMENTOUS FLOWER 1%2C FIL homolog 1;Note=Similar to cDNA clone:J023038F18%2C full insert sequence.;Transcript_evidence=AK120952 (DDBJ%2C Best hit);ORF_evidence=D3U2G4 (UniProt);InterPro=YABBY protein (IPR006780);NIAS_FLcDNA=J023038N03;Oryzabase=6310;Expression=AK120952;TENOR=Os07t0160100-01;KEGG=Os07t0160100-01
Chr07	irgsp1_rep	five_prime_UTR	3219923	3221906	.	+	.	Parent=Os07t0160100-01
Chr07	irgsp1_rep	CDS	3221907	3222011	.	+	0	Parent=Os07t0160100-01
Chr07	irgsp1_rep	three_prime_UTR	3222012	3224754	.	+	.	Parent=Os07t0160100-01
Chr07	irgsp1_rep	mRNA	3221776	3229057	.	+	.	ID=Os07t0160100-02;Name=Os07t0160100-02;Locus_id=Os07g0160100;RAP-DB Gene Symbol Synonym(s)=YAB1%2C OsYAB1%2C FIL1%2C osFIL1;RAP-DB Gene Name Synonym(s)=YABBY1%2C YABBY1 gene%2C YABBY 1%2C OsYABBY1%2C %2C Os YABBY1%2C FILAMENTOUS FLOWER 1%2C Protein YABBY 1%2C Protein FILAMENTOUS FLOWER 1%2C FIL homolog 1;CGSNL Gene Symbol=YAB1;CGSNL Gene Name=YABBY1;Oryzabase Gene Symbol Synonym(s)=OsYAB1%2C FIL1%2C osFIL1;Oryzabase Gene Name Synonym(s)=YABBY1 gene%2C YABBY 1%2C OsYABBY1%2C Os YABBY1%2C FILAMENTOUS FLOWER 1%2C Protein YABBY 1%2C Protein FILAMENTOUS FLOWER 1%2C FIL homolog 1;Note=YABBY family transcription factor%2C Stamen and carpel development%2C Feedback regulation of gibberellin biosynthesis;Transcript_evidence=AF098752,AB274013,AK070045;ORF_evidence=Q7XIM7;GO=Biological Process: multicellular organismal development (GO:0007275);InterPro=YABBY protein (IPR006780),High mobility group box domain (IPR009071);NIAS_FLcDNA=J023038F18;Manual Curation=March 16%2C 2016;Literature_PMID=17369428,17216490,15604733;Oryzabase=6310;Expression=AK070045;TENOR=Os07t0160100-02;KEGG=Os07t0160100-02
Chr07	irgsp1_rep	five_prime_UTR	3221776	3221906	.	+	.	Parent=Os07t0160100-02
Chr07	irgsp1_rep	CDS	3221907	3221975	.	+	0	Parent=Os07t0160100-02
Chr07	irgsp1_rep	CDS	3224909	3225028	.	+	0	Parent=Os07t0160100-02
Chr07	irgsp1_rep	CDS	3225230	3225353	.	+	0	Parent=Os07t0160100-02
Chr07	irgsp1_rep	CDS	3225826	3225874	.	+	2	Parent=Os07t0160100-02
Chr07	irgsp1_rep	CDS	3227841	3227916	.	+	1	Parent=Os07t0160100-02
Chr07	irgsp1_rep	CDS	3228671	3228742	.	+	0	Parent=Os07t0160100-02
Chr07	irgsp1_rep	three_prime_UTR	3228743	3229057	.	+	.	Parent=Os07t0160100-02
Chr07	irgsp1_rep	mRNA	3221777	3229237	.	+	.	ID=Os07t0160100-03;Name=Os07t0160100-03;Locus_id=Os07g0160100;CGSNL Gene Symbol=YAB1;CGSNL Gene Name=YABBY1;Oryzabase Gene Symbol Synonym(s)=OsYAB1%2C FIL1%2C osFIL1;Oryzabase Gene Name Synonym(s)=YABBY1 gene%2C YABBY 1%2C OsYABBY1%2C Os YABBY1%2C FILAMENTOUS FLOWER 1%2C Protein YABBY 1%2C Protein FILAMENTOUS FLOWER 1%2C FIL homolog 1;Note=Similar to MADS-box transcription factor.;Transcript_evidence=AK100222 (DDBJ%2C Best hit);ORF_evidence=D3U2G4 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=High mobility group%2C HMG1/HMG2 (IPR000910),YABBY protein (IPR006780),High mobility group%2C superfamily (IPR009071);NIAS_FLcDNA=J023047G10;Oryzabase=6310;TENOR=Os07t0160100-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	3221777	3221975	.	+	.	Parent=Os07t0160100-03
Chr07	irgsp1_rep	five_prime_UTR	3224909	3225797	.	+	.	Parent=Os07t0160100-03
Chr07	irgsp1_rep	CDS	3225798	3225874	.	+	0	Parent=Os07t0160100-03
Chr07	irgsp1_rep	CDS	3227841	3227916	.	+	1	Parent=Os07t0160100-03
Chr07	irgsp1_rep	CDS	3228671	3228742	.	+	0	Parent=Os07t0160100-03
Chr07	irgsp1_rep	three_prime_UTR	3228743	3229237	.	+	.	Parent=Os07t0160100-03
Chr07	irgsp1_rep	mRNA	3241946	3244545	.	+	.	ID=Os07t0160300-01;Name=Os07t0160300-01;Locus_id=Os07g0160300;Note=Shikimate kinase domain containing protein.;Transcript_evidence=AK065685 (DDBJ%2C Best hit);ORF_evidence=A2YID4 (UniProt);GO=Molecular Function: shikimate kinase activity (GO:0004765),Molecular Function: ATP binding (GO:0005524);InterPro=Shikimate kinase (IPR000623);NIAS_FLcDNA=J013040D10;Expression=AK065685;TENOR=Os07t0160300-01;KEGG=Os07t0160300-01
Chr07	irgsp1_rep	five_prime_UTR	3241946	3242095	.	+	.	Parent=Os07t0160300-01
Chr07	irgsp1_rep	CDS	3242096	3242695	.	+	0	Parent=Os07t0160300-01
Chr07	irgsp1_rep	three_prime_UTR	3242696	3242743	.	+	.	Parent=Os07t0160300-01
Chr07	irgsp1_rep	three_prime_UTR	3243695	3243812	.	+	.	Parent=Os07t0160300-01
Chr07	irgsp1_rep	three_prime_UTR	3243913	3244066	.	+	.	Parent=Os07t0160300-01
Chr07	irgsp1_rep	three_prime_UTR	3244154	3244545	.	+	.	Parent=Os07t0160300-01
Chr07	irgsp1_rep	mRNA	3244803	3247308	.	-	.	ID=Os07t0160400-01;Name=Os07t0160400-01;Locus_id=Os07g0160400;CGSNL Gene Symbol=GLYI9;CGSNL Gene Name=GLYOXALASE I-9;Oryzabase Gene Symbol Synonym(s)=OsGLYI9%2C OsGLYI9.1%2C OsGLYI9.2;Oryzabase Gene Name Synonym(s)=glyoxalase I-9;Note=Glyoxalase/bleomycin resistance protein/dioxygenase domain containing protein.;Transcript_evidence=AK120286 (DDBJ%2C Best hit);ORF_evidence=B6TNF3 (UniProt);InterPro=Glyoxalase/fosfomycin resistance/dioxygenase (IPR004360);NIAS_FLcDNA=J013050B15;Oryzabase=9359;Expression=AK120286;TENOR=Os07t0160400-01;KEGG=Os07t0160400-01
Chr07	irgsp1_rep	five_prime_UTR	3247252	3247308	.	-	.	Parent=Os07t0160400-01
Chr07	irgsp1_rep	CDS	3247068	3247251	.	-	0	Parent=Os07t0160400-01
Chr07	irgsp1_rep	CDS	3246062	3246151	.	-	2	Parent=Os07t0160400-01
Chr07	irgsp1_rep	CDS	3245741	3245944	.	-	2	Parent=Os07t0160400-01
Chr07	irgsp1_rep	CDS	3245080	3245168	.	-	2	Parent=Os07t0160400-01
Chr07	irgsp1_rep	three_prime_UTR	3244803	3245079	.	-	.	Parent=Os07t0160400-01
Chr07	irgsp1_rep	mRNA	3252386	3255460	.	+	.	ID=Os07t0160500-01;Name=Os07t0160500-01;Locus_id=Os07g0160500;Oryzabase Gene Symbol Synonym(s)=OsFbox342%2C Os_F0418;Oryzabase Gene Name Synonym(s)=F-box protein 342;Note=F-box domain%2C Skp2-like domain containing protein.;Transcript_evidence=AK241756 (DDBJ%2C Best hit);ORF_evidence=A2YID8 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J065204D07;Oryzabase=17118;TENOR=Os07t0160500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	3252386	3252613	.	+	.	Parent=Os07t0160500-01
Chr07	irgsp1_rep	five_prime_UTR	3252713	3252812	.	+	.	Parent=Os07t0160500-01
Chr07	irgsp1_rep	five_prime_UTR	3253467	3253488	.	+	.	Parent=Os07t0160500-01
Chr07	irgsp1_rep	CDS	3253489	3253581	.	+	0	Parent=Os07t0160500-01
Chr07	irgsp1_rep	CDS	3253687	3254530	.	+	0	Parent=Os07t0160500-01
Chr07	irgsp1_rep	CDS	3254633	3254724	.	+	2	Parent=Os07t0160500-01
Chr07	irgsp1_rep	three_prime_UTR	3254725	3254785	.	+	.	Parent=Os07t0160500-01
Chr07	irgsp1_rep	three_prime_UTR	3254868	3255460	.	+	.	Parent=Os07t0160500-01
Chr07	irgsp1_rep	mRNA	3258325	3262106	.	+	.	ID=Os07t0160600-01;Name=Os07t0160600-01;Locus_id=Os07g0160600;CGSNL Gene Symbol=FLA16;CGSNL Gene Name=FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16;Oryzabase Gene Symbol Synonym(s)=OsFLA16;Oryzabase Gene Name Synonym(s)=fasciclin-like AGP 16%2C fasciclin-like arabinogalactan protein 16;Note=FAS1 domain domain containing protein.;Transcript_evidence=AK065047 (DDBJ%2C Best hit),AK098844 (DDBJ%2C Best hit);ORF_evidence=B6TRG3 (UniProt);InterPro=FAS1 domain (IPR000782);NIAS_FLcDNA=J013001I08,J013000B24;Oryzabase=11351;TENOR=Os07t0160600-01
Chr07	irgsp1_rep	five_prime_UTR	3258325	3258393	.	+	.	Parent=Os07t0160600-01
Chr07	irgsp1_rep	CDS	3258394	3259759	.	+	0	Parent=Os07t0160600-01
Chr07	irgsp1_rep	CDS	3261630	3261703	.	+	2	Parent=Os07t0160600-01
Chr07	irgsp1_rep	three_prime_UTR	3261704	3262106	.	+	.	Parent=Os07t0160600-01
Chr07	irgsp1_rep	mRNA	3258380	3261811	.	-	.	ID=Os07t0160800-00;Name=Os07t0160800-00;Locus_id=Os07g0160800;Note=Hypothetical protein.;Transcript_evidence=tplb0029f18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0160800-00
Chr07	irgsp1_rep	five_prime_UTR	3261628	3261811	.	-	.	Parent=Os07t0160800-00
Chr07	irgsp1_rep	five_prime_UTR	3259561	3259757	.	-	.	Parent=Os07t0160800-00
Chr07	irgsp1_rep	CDS	3258380	3259560	.	-	0	Parent=Os07t0160800-00
Chr07	irgsp1_rep	mRNA	3270392	3275905	.	-	.	ID=Os07t0161000-01;Name=Os07t0161000-01;Locus_id=Os07g0161000;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK065877 (DDBJ%2C Best hit);ORF_evidence=B8B7F4 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide TPR-1 (IPR001440),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734),Peptidyl-prolyl cis-trans isomerase%2C FKBP-type (IPR023566);NIAS_FLcDNA=J013050G10;Expression=AK065877;TENOR=Os07t0161000-01;KEGG=Os07t0161000-01
Chr07	irgsp1_rep	five_prime_UTR	3275680	3275905	.	-	.	Parent=Os07t0161000-01
Chr07	irgsp1_rep	CDS	3275596	3275679	.	-	0	Parent=Os07t0161000-01
Chr07	irgsp1_rep	CDS	3274541	3274771	.	-	0	Parent=Os07t0161000-01
Chr07	irgsp1_rep	CDS	3273836	3273892	.	-	0	Parent=Os07t0161000-01
Chr07	irgsp1_rep	CDS	3273623	3273751	.	-	0	Parent=Os07t0161000-01
Chr07	irgsp1_rep	CDS	3273133	3273210	.	-	0	Parent=Os07t0161000-01
Chr07	irgsp1_rep	CDS	3272975	3273045	.	-	0	Parent=Os07t0161000-01
Chr07	irgsp1_rep	CDS	3272499	3272551	.	-	1	Parent=Os07t0161000-01
Chr07	irgsp1_rep	CDS	3271492	3272141	.	-	2	Parent=Os07t0161000-01
Chr07	irgsp1_rep	CDS	3271250	3271393	.	-	0	Parent=Os07t0161000-01
Chr07	irgsp1_rep	CDS	3270774	3270920	.	-	0	Parent=Os07t0161000-01
Chr07	irgsp1_rep	three_prime_UTR	3270392	3270773	.	-	.	Parent=Os07t0161000-01
Chr07	irgsp1_rep	mRNA	3270410	3272019	.	-	.	ID=Os07t0161000-02;Name=Os07t0161000-02;Locus_id=Os07g0161000;Note=Hypothetical conserved gene.;Transcript_evidence=AK062039 (DDBJ%2C Best hit);ORF_evidence=B8B7F4 (UniProt);NIAS_FLcDNA=001-044-A01;Expression=AK062039;TENOR=Os07t0161000-02;KEGG=Os07t0161000-02
Chr07	irgsp1_rep	CDS	3271492	3272019	.	-	0	Parent=Os07t0161000-02
Chr07	irgsp1_rep	CDS	3271250	3271393	.	-	0	Parent=Os07t0161000-02
Chr07	irgsp1_rep	CDS	3270774	3270920	.	-	0	Parent=Os07t0161000-02
Chr07	irgsp1_rep	three_prime_UTR	3270410	3270773	.	-	.	Parent=Os07t0161000-02
Chr07	irgsp1_rep	mRNA	3285400	3287427	.	+	.	ID=Os07t0161500-00;Name=Os07t0161500-00;Locus_id=Os07g0161500;Oryzabase Gene Symbol Synonym(s)=OsFbox343%2C Os_F0141;Oryzabase Gene Name Synonym(s)=F-box protein 343;Note=Similar to OO_Ba0005L10-OO_Ba0081K17.27 protein.;Transcript_evidence=AK375692 (DDBJ);ORF_evidence=D0ABD8 (UniProt);InterPro=FBD (IPR013596);Oryzabase=17119;TENOR=Os07t0161500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	3285400	3286290	.	+	0	Parent=Os07t0161500-00
Chr07	irgsp1_rep	CDS	3286405	3286557	.	+	0	Parent=Os07t0161500-00
Chr07	irgsp1_rep	CDS	3287107	3287427	.	+	0	Parent=Os07t0161500-00
Chr07	irgsp1_rep	mRNA	3288480	3293291	.	-	.	ID=Os07t0161600-01;Name=Os07t0161600-01;Locus_id=Os07g0161600;RAP-DB Gene Symbol Synonym(s)=CDPK17%2C OsCPK17;RAP-DB Gene Name Synonym(s)=CALCIUM-DEPENDENT PROTEIN KINASE 17%2C calcium-dependent protein kinase 17;CGSNL Gene Symbol=CDPK17;CGSNL Gene Name=CALCIUM-DEPENDENT PROTEIN KINASE 17;Oryzabase Gene Symbol Synonym(s)=OsCDPK17%2C OsCPK17%2C CPK17%2C OsCPK17.1%2C OsCPK17.2%2C OsCPK17.3%2C OsCPK17.4%2C OsCPK17.5;Oryzabase Gene Name Synonym(s)=calcium-dependent protein kinase;Note=Calcium-dependent protein kinase%2C Cold stress response;Transcript_evidence=AK068414;ORF_evidence=Q7XIM0;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),EF-hand domain pair (IPR011992),EF-hand domain (IPR002048),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271),EF-Hand 1%2C calcium-binding site (IPR018247);NIAS_FLcDNA=J013153A17;Manual Curation=June 6%2C 2017;Literature_PMID=28102545,15695435;Oryzabase=8068;Expression=AK068414;TENOR=Os07t0161600-01;KEGG=Os07t0161600-01 (EC:2.7.11.17)
Chr07	irgsp1_rep	five_prime_UTR	3293104	3293291	.	-	.	Parent=Os07t0161600-01
Chr07	irgsp1_rep	CDS	3292323	3293103	.	-	0	Parent=Os07t0161600-01
Chr07	irgsp1_rep	CDS	3291503	3291646	.	-	2	Parent=Os07t0161600-01
Chr07	irgsp1_rep	CDS	3291242	3291394	.	-	2	Parent=Os07t0161600-01
Chr07	irgsp1_rep	CDS	3291055	3291170	.	-	2	Parent=Os07t0161600-01
Chr07	irgsp1_rep	CDS	3290801	3290968	.	-	0	Parent=Os07t0161600-01
Chr07	irgsp1_rep	CDS	3290193	3290417	.	-	0	Parent=Os07t0161600-01
Chr07	irgsp1_rep	CDS	3289980	3290099	.	-	0	Parent=Os07t0161600-01
Chr07	irgsp1_rep	three_prime_UTR	3289978	3289979	.	-	.	Parent=Os07t0161600-01
Chr07	irgsp1_rep	three_prime_UTR	3288480	3288971	.	-	.	Parent=Os07t0161600-01
Chr07	irgsp1_rep	mRNA	3290163	3293001	.	+	.	ID=Os07t0161650-00;Name=Os07t0161650-00;Locus_id=Os07g0161650;Note=Hypothetical protein.;Transcript_evidence=tplb0047b17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0161650-00
Chr07	irgsp1_rep	five_prime_UTR	3290163	3290423	.	+	.	Parent=Os07t0161650-00
Chr07	irgsp1_rep	five_prime_UTR	3290813	3290964	.	+	.	Parent=Os07t0161650-00
Chr07	irgsp1_rep	five_prime_UTR	3291051	3291168	.	+	.	Parent=Os07t0161650-00
Chr07	irgsp1_rep	five_prime_UTR	3291240	3291385	.	+	.	Parent=Os07t0161650-00
Chr07	irgsp1_rep	five_prime_UTR	3291492	3291653	.	+	.	Parent=Os07t0161650-00
Chr07	irgsp1_rep	five_prime_UTR	3292334	3292380	.	+	.	Parent=Os07t0161650-00
Chr07	irgsp1_rep	CDS	3292381	3293001	.	+	0	Parent=Os07t0161650-00
Chr07	irgsp1_rep	mRNA	3296830	3297367	.	+	.	ID=Os07t0161700-00;Name=Os07t0161700-00;Locus_id=Os07g0161700;Oryzabase Gene Symbol Synonym(s)=OsVQ26;Oryzabase Gene Name Synonym(s)=VQ motif-containing protein 26;Note=VQ domain containing protein.;Transcript_evidence=AK330511 (DDBJ);ORF_evidence=Q8H543 (UniProt);InterPro=VQ (IPR008889);Oryzabase=13642;TENOR=Os07t0161700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	3296830	3296839	.	+	.	Parent=Os07t0161700-00
Chr07	irgsp1_rep	CDS	3296840	3297367	.	+	0	Parent=Os07t0161700-00
Chr07	irgsp1_rep	mRNA	3316476	3318170	.	-	.	ID=Os07t0162100-00;Name=Os07t0162100-00;Locus_id=Os07g0162100;Note=3-oxo-5-alpha-steroid 4-dehydrogenase%2C C-terminal domain containing protein.;Transcript_evidence=FP094872 (DDBJ);ORF_evidence=NP_001147692.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Cellular Component: cytoplasm (GO:0005737),Cellular Component: integral to membrane (GO:0016021),Molecular Function: oxidoreductase activity%2C acting on the CH-CH group of donors (GO:0016627);InterPro=3-oxo-5-alpha-steroid 4-dehydrogenase%2C C-terminal (IPR001104);TENOR=Os07t0162100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	3317826	3318170	.	-	0	Parent=Os07t0162100-00
Chr07	irgsp1_rep	CDS	3316486	3316974	.	-	0	Parent=Os07t0162100-00
Chr07	irgsp1_rep	three_prime_UTR	3316476	3316485	.	-	.	Parent=Os07t0162100-00
Chr07	irgsp1_rep	mRNA	3321133	3322023	.	-	.	ID=Os07t0162200-00;Name=Os07t0162200-00;Locus_id=Os07g0162200;Note=Protein of unknown function DUF593 domain containing protein.;Transcript_evidence=tplb0058k18 (Wheat FLcDNA);ORF_evidence=Q8H538 (UniProt);InterPro=Protein of unknown function DUF593 (IPR007656);TENOR=Os07t0162200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	3321991	3322023	.	-	.	Parent=Os07t0162200-00
Chr07	irgsp1_rep	CDS	3321133	3321990	.	-	0	Parent=Os07t0162200-00
Chr07	irgsp1_rep	mRNA	3324859	3329936	.	+	.	ID=Os07t0162300-01;Name=Os07t0162300-01;Locus_id=Os07g0162300;Note=Similar to RIO kinase.;Transcript_evidence=AK066456 (DDBJ%2C Best hit);ORF_evidence=B9FVM0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=RIO kinase (IPR000687),Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase Rio1 (IPR017407),RIO-like kinase (IPR018934),RIO kinase%2C conserved site (IPR018935);NIAS_FLcDNA=J013061L22;Expression=AK066456;TENOR=Os07t0162300-01;KEGG=Os07t0162300-01 (EC:2.7.11.1)
Chr07	irgsp1_rep	five_prime_UTR	3324859	3325046	.	+	.	Parent=Os07t0162300-01
Chr07	irgsp1_rep	CDS	3325047	3325098	.	+	0	Parent=Os07t0162300-01
Chr07	irgsp1_rep	CDS	3325167	3325273	.	+	2	Parent=Os07t0162300-01
Chr07	irgsp1_rep	CDS	3325689	3325817	.	+	0	Parent=Os07t0162300-01
Chr07	irgsp1_rep	CDS	3326509	3326601	.	+	0	Parent=Os07t0162300-01
Chr07	irgsp1_rep	CDS	3326783	3326862	.	+	0	Parent=Os07t0162300-01
Chr07	irgsp1_rep	CDS	3327028	3327141	.	+	1	Parent=Os07t0162300-01
Chr07	irgsp1_rep	CDS	3327378	3327451	.	+	1	Parent=Os07t0162300-01
Chr07	irgsp1_rep	CDS	3327605	3327681	.	+	2	Parent=Os07t0162300-01
Chr07	irgsp1_rep	CDS	3328406	3328489	.	+	0	Parent=Os07t0162300-01
Chr07	irgsp1_rep	CDS	3328580	3328672	.	+	0	Parent=Os07t0162300-01
Chr07	irgsp1_rep	CDS	3328749	3328856	.	+	0	Parent=Os07t0162300-01
Chr07	irgsp1_rep	CDS	3328978	3329052	.	+	0	Parent=Os07t0162300-01
Chr07	irgsp1_rep	CDS	3329355	3329759	.	+	0	Parent=Os07t0162300-01
Chr07	irgsp1_rep	three_prime_UTR	3329760	3329936	.	+	.	Parent=Os07t0162300-01
Chr07	irgsp1_rep	mRNA	3332889	3334136	.	-	.	ID=Os07t0162400-01;Name=Os07t0162400-01;Locus_id=Os07g0162400;Oryzabase Gene Symbol Synonym(s)=OsCDAP1%2C GID1L2;Oryzabase Gene Name Synonym(s)=Cell death associated protein 1;Note=Alpha/beta hydrolase fold-3 domain containing protein.;Transcript_evidence=AK060082 (DDBJ%2C Best hit);ORF_evidence=A2YIF2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Lipase%2C GDXG%2C active site (IPR002168),Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=006-306-D11;Oryzabase=14743;Expression=AK060082;TENOR=Os07t0162400-01;KEGG=Os07t0162400-01
Chr07	irgsp1_rep	five_prime_UTR	3334076	3334136	.	-	.	Parent=Os07t0162400-01
Chr07	irgsp1_rep	CDS	3333092	3334075	.	-	0	Parent=Os07t0162400-01
Chr07	irgsp1_rep	three_prime_UTR	3332889	3333091	.	-	.	Parent=Os07t0162400-01
Chr07	irgsp1_rep	mRNA	3339394	3340629	.	+	.	ID=Os07t0162450-01;Name=Os07t0162450-01;Locus_id=Os07g0162450;Note=Protein of unknown function DUF3778 domain containing protein.;Transcript_evidence=AK240998 (DDBJ%2C Best hit);ORF_evidence=NP_001175064.1 (RefSeq);InterPro=Protein of unknown function DUF3778 (IPR022256);NIAS_FLcDNA=J065053B15;Oryzabase=22566;TENOR=Os07t0162450-01;KEGG=Os07t0162450-01
Chr07	irgsp1_rep	five_prime_UTR	3339394	3340162	.	+	.	Parent=Os07t0162450-01
Chr07	irgsp1_rep	CDS	3340163	3340612	.	+	0	Parent=Os07t0162450-01
Chr07	irgsp1_rep	three_prime_UTR	3340613	3340629	.	+	.	Parent=Os07t0162450-01
Chr07	irgsp1_rep	mRNA	3342219	3343596	.	-	.	ID=Os07t0162500-02;Name=Os07t0162500-02;Locus_id=Os07g0162500;Note=Alpha/beta hydrolase fold-3 domain containing protein.;Transcript_evidence=AK061530 (DDBJ%2C Best hit),AK106008 (DDBJ%2C Best hit),AK106142 (DDBJ%2C Best hit);ORF_evidence=B9FVM3 (UniProt);NIAS_FLcDNA=006-310-E02,001-206-A09,001-207-G10;Expression=AK061530;TENOR=Os07t0162500-02;KEGG=Os07t0162500-02
Chr07	irgsp1_rep	five_prime_UTR	3343522	3343596	.	-	.	Parent=Os07t0162500-02
Chr07	irgsp1_rep	CDS	3342535	3343521	.	-	0	Parent=Os07t0162500-02
Chr07	irgsp1_rep	three_prime_UTR	3342219	3342534	.	-	.	Parent=Os07t0162500-02
Chr07	irgsp1_rep	mRNA	3344780	3346551	.	-	.	ID=Os07t0162600-02;Name=Os07t0162600-02;Locus_id=Os07g0162600;Note=Alpha/beta hydrolase fold-3 domain containing protein.;Transcript_evidence=AK106274 (DDBJ%2C Best hit),AK105789 (DDBJ%2C Best hit);ORF_evidence=A3BGU3 (UniProt);NIAS_FLcDNA=002-100-G12,001-202-H03;Expression=AK106274;TENOR=Os07t0162600-02;KEGG=Os07t0162600-02
Chr07	irgsp1_rep	five_prime_UTR	3346522	3346551	.	-	.	Parent=Os07t0162600-02
Chr07	irgsp1_rep	CDS	3345514	3346521	.	-	0	Parent=Os07t0162600-02
Chr07	irgsp1_rep	three_prime_UTR	3344780	3345513	.	-	.	Parent=Os07t0162600-02
Chr07	irgsp1_rep	mRNA	3351308	3352672	.	-	.	ID=Os07t0162700-01;Name=Os07t0162700-01;Locus_id=Os07g0162700;Oryzabase Gene Symbol Synonym(s)=OsCDAP2;Oryzabase Gene Name Synonym(s)=Cell death associated protein 2;Note=Alpha/beta hydrolase fold-3 domain containing protein.;Transcript_evidence=AK110810 (DDBJ%2C Best hit);ORF_evidence=Q0ZPW1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=002-171-F04;Oryzabase=14744;Expression=AK110810;TENOR=Os07t0162700-01;KEGG=Os07t0162700-01
Chr07	irgsp1_rep	five_prime_UTR	3352610	3352672	.	-	.	Parent=Os07t0162700-01
Chr07	irgsp1_rep	CDS	3351554	3352609	.	-	0	Parent=Os07t0162700-01
Chr07	irgsp1_rep	three_prime_UTR	3351308	3351553	.	-	.	Parent=Os07t0162700-01
Chr07	irgsp1_rep	mRNA	3360001	3361559	.	-	.	ID=Os07t0162900-01;Name=Os07t0162900-01;Locus_id=Os07g0162900;Oryzabase Gene Symbol Synonym(s)=OsCDAP3;Oryzabase Gene Name Synonym(s)=Cell death associated protein 3;Note=Lipase%2C GDXG%2C active site domain containing protein.;Transcript_evidence=AK106266 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Lipase%2C GDXG%2C active site (IPR002168),Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=002-100-G01;Oryzabase=14745;TENOR=Os07t0162900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	3360360	3361559	.	-	0	Parent=Os07t0162900-01
Chr07	irgsp1_rep	three_prime_UTR	3360001	3360359	.	-	.	Parent=Os07t0162900-01
Chr07	irgsp1_rep	mRNA	3363008	3370018	.	-	.	ID=Os07t0163000-01;Name=Os07t0163000-01;Locus_id=Os07g0163000;CGSNL Gene Symbol=D-LDH;CGSNL Gene Name=D-LACTATE DEHYDROGENASE;Oryzabase Gene Symbol Synonym(s)=OsD-LDH%2C OsD-LDH1%2C D-LDH1;Oryzabase Gene Name Synonym(s)=D-lactate dehydrogenase%2C D-lactate dehydrogenase 1;Note=Similar to FAD linked oxidase family protein.;Transcript_evidence=AK067700 (DDBJ%2C Best hit);ORF_evidence=NP_568170.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=FAD linked oxidase%2C N-terminal (IPR006094),FAD-binding%2C type 2 (IPR016166),FAD-binding%2C type 2%2C subdomain 1 (IPR016167),FAD-linked oxidase%2C FAD-binding%2C subdomain 2 (IPR016168);NIAS_FLcDNA=J013118L17;Oryzabase=22233;TENOR=Os07t0163000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	3369988	3370018	.	-	.	Parent=Os07t0163000-01
Chr07	irgsp1_rep	CDS	3369752	3369987	.	-	0	Parent=Os07t0163000-01
Chr07	irgsp1_rep	CDS	3369571	3369664	.	-	1	Parent=Os07t0163000-01
Chr07	irgsp1_rep	CDS	3369382	3369482	.	-	0	Parent=Os07t0163000-01
Chr07	irgsp1_rep	CDS	3369193	3369241	.	-	1	Parent=Os07t0163000-01
Chr07	irgsp1_rep	CDS	3368595	3368687	.	-	0	Parent=Os07t0163000-01
Chr07	irgsp1_rep	CDS	3368181	3368296	.	-	0	Parent=Os07t0163000-01
Chr07	irgsp1_rep	CDS	3367814	3367873	.	-	1	Parent=Os07t0163000-01
Chr07	irgsp1_rep	CDS	3367647	3367653	.	-	1	Parent=Os07t0163000-01
Chr07	irgsp1_rep	three_prime_UTR	3367610	3367646	.	-	.	Parent=Os07t0163000-01
Chr07	irgsp1_rep	three_prime_UTR	3367470	3367531	.	-	.	Parent=Os07t0163000-01
Chr07	irgsp1_rep	three_prime_UTR	3367211	3367307	.	-	.	Parent=Os07t0163000-01
Chr07	irgsp1_rep	three_prime_UTR	3366631	3366705	.	-	.	Parent=Os07t0163000-01
Chr07	irgsp1_rep	three_prime_UTR	3366164	3366272	.	-	.	Parent=Os07t0163000-01
Chr07	irgsp1_rep	three_prime_UTR	3365436	3365545	.	-	.	Parent=Os07t0163000-01
Chr07	irgsp1_rep	three_prime_UTR	3364460	3365193	.	-	.	Parent=Os07t0163000-01
Chr07	irgsp1_rep	three_prime_UTR	3364114	3364244	.	-	.	Parent=Os07t0163000-01
Chr07	irgsp1_rep	three_prime_UTR	3363995	3364038	.	-	.	Parent=Os07t0163000-01
Chr07	irgsp1_rep	three_prime_UTR	3363008	3363611	.	-	.	Parent=Os07t0163000-01
Chr07	irgsp1_rep	mRNA	3363492	3369987	.	-	.	ID=Os07t0163000-02;Name=Os07t0163000-02;Locus_id=Os07g0163000;RAP-DB Gene Symbol Synonym(s)=OsD-LDH%2C D-LDH%2C OsD-LDH-FL;RAP-DB Gene Name Synonym(s)=D-lactate dehydrogenase;CGSNL Gene Symbol=D-LDH;CGSNL Gene Name=D-LACTATE DEHYDROGENASE;Oryzabase Gene Symbol Synonym(s)=OsD-LDH;Oryzabase Gene Name Synonym(s)=D-lactate dehydrogenase;Note=D-lactate dehydrogenase%2C Methylglyoxal metabolism;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: FAD binding (GO:0071949);InterPro=FAD-binding%2C type PCMH-like superfamily (IPR036318),FAD-linked oxidase-like%2C C-terminal (IPR016164),Vanillyl-alcohol oxidase%2C C-terminal subdomain 2 (IPR016171),FAD-binding domain%2C PCMH-type (IPR016166),FAD linked oxidase%2C N-terminal (IPR006094),FAD-linked oxidase%2C C-terminal (IPR004113);Manual Curation=October 24%2C 2018;Literature_PMID=29259615;Oryzabase=22233;Subcellular location=mitochondrion (GO:0005739)
Chr07	irgsp1_rep	CDS	3369752	3369987	.	-	0	Parent=Os07t0163000-02
Chr07	irgsp1_rep	CDS	3369571	3369664	.	-	1	Parent=Os07t0163000-02
Chr07	irgsp1_rep	CDS	3369382	3369482	.	-	0	Parent=Os07t0163000-02
Chr07	irgsp1_rep	CDS	3369193	3369241	.	-	1	Parent=Os07t0163000-02
Chr07	irgsp1_rep	CDS	3368595	3368687	.	-	0	Parent=Os07t0163000-02
Chr07	irgsp1_rep	CDS	3368182	3368296	.	-	0	Parent=Os07t0163000-02
Chr07	irgsp1_rep	CDS	3367814	3367874	.	-	2	Parent=Os07t0163000-02
Chr07	irgsp1_rep	CDS	3367610	3367646	.	-	1	Parent=Os07t0163000-02
Chr07	irgsp1_rep	CDS	3367470	3367531	.	-	0	Parent=Os07t0163000-02
Chr07	irgsp1_rep	CDS	3367211	3367307	.	-	1	Parent=Os07t0163000-02
Chr07	irgsp1_rep	CDS	3366631	3366705	.	-	0	Parent=Os07t0163000-02
Chr07	irgsp1_rep	CDS	3366164	3366272	.	-	0	Parent=Os07t0163000-02
Chr07	irgsp1_rep	CDS	3365436	3365545	.	-	2	Parent=Os07t0163000-02
Chr07	irgsp1_rep	CDS	3365131	3365193	.	-	0	Parent=Os07t0163000-02
Chr07	irgsp1_rep	CDS	3364460	3364539	.	-	0	Parent=Os07t0163000-02
Chr07	irgsp1_rep	CDS	3364114	3364244	.	-	1	Parent=Os07t0163000-02
Chr07	irgsp1_rep	CDS	3363995	3364038	.	-	2	Parent=Os07t0163000-02
Chr07	irgsp1_rep	CDS	3363492	3363611	.	-	0	Parent=Os07t0163000-02
Chr07	irgsp1_rep	mRNA	3363492	3369987	.	-	.	ID=Os07t0163000-03;Name=Os07t0163000-03;Locus_id=Os07g0163000;RAP-DB Gene Symbol Synonym(s)=OsD-LDH%2C D-LDH%2C OsD-LDH-Tr;RAP-DB Gene Name Synonym(s)=D-lactate dehydrogenase;CGSNL Gene Symbol=D-LDH;CGSNL Gene Name=D-LACTATE DEHYDROGENASE;Oryzabase Gene Symbol Synonym(s)=OsD-LDH%2C OsD-LDH1%2C D-LDH1;Oryzabase Gene Name Synonym(s)=D-lactate dehydrogenase%2C D-lactate dehydrogenase 1;Note=D-lactate dehydrogenase (truncated)%2C Splicing variant;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: FAD binding (GO:0071949);InterPro=FAD-binding%2C type PCMH-like superfamily (IPR036318),FAD-binding domain%2C PCMH-type (IPR016166),FAD linked oxidase%2C N-terminal (IPR006094);Manual Curation=October 24%2C 2018;Literature_PMID=29259615;Oryzabase=22233
Chr07	irgsp1_rep	CDS	3369752	3369987	.	-	0	Parent=Os07t0163000-03
Chr07	irgsp1_rep	CDS	3369571	3369664	.	-	1	Parent=Os07t0163000-03
Chr07	irgsp1_rep	CDS	3369382	3369482	.	-	0	Parent=Os07t0163000-03
Chr07	irgsp1_rep	CDS	3369193	3369241	.	-	1	Parent=Os07t0163000-03
Chr07	irgsp1_rep	CDS	3368595	3368687	.	-	0	Parent=Os07t0163000-03
Chr07	irgsp1_rep	CDS	3368181	3368296	.	-	0	Parent=Os07t0163000-03
Chr07	irgsp1_rep	CDS	3367814	3367873	.	-	1	Parent=Os07t0163000-03
Chr07	irgsp1_rep	CDS	3367647	3367653	.	-	1	Parent=Os07t0163000-03
Chr07	irgsp1_rep	three_prime_UTR	3367610	3367646	.	-	.	Parent=Os07t0163000-03
Chr07	irgsp1_rep	three_prime_UTR	3367470	3367531	.	-	.	Parent=Os07t0163000-03
Chr07	irgsp1_rep	three_prime_UTR	3367211	3367307	.	-	.	Parent=Os07t0163000-03
Chr07	irgsp1_rep	three_prime_UTR	3366631	3366705	.	-	.	Parent=Os07t0163000-03
Chr07	irgsp1_rep	three_prime_UTR	3366164	3366272	.	-	.	Parent=Os07t0163000-03
Chr07	irgsp1_rep	three_prime_UTR	3365436	3365545	.	-	.	Parent=Os07t0163000-03
Chr07	irgsp1_rep	three_prime_UTR	3365131	3365193	.	-	.	Parent=Os07t0163000-03
Chr07	irgsp1_rep	three_prime_UTR	3364460	3364539	.	-	.	Parent=Os07t0163000-03
Chr07	irgsp1_rep	three_prime_UTR	3364114	3364244	.	-	.	Parent=Os07t0163000-03
Chr07	irgsp1_rep	three_prime_UTR	3363995	3364038	.	-	.	Parent=Os07t0163000-03
Chr07	irgsp1_rep	three_prime_UTR	3363492	3363611	.	-	.	Parent=Os07t0163000-03
Chr07	irgsp1_rep	mRNA	3363492	3369984	.	+	.	ID=Os07t0163066-00;Name=Os07t0163066-00;Locus_id=Os07g0163066;Note=Hypothetical protein.;Transcript_evidence=tplb0048e10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0163066-00
Chr07	irgsp1_rep	five_prime_UTR	3363492	3363642	.	+	.	Parent=Os07t0163066-00
Chr07	irgsp1_rep	five_prime_UTR	3364101	3364252	.	+	.	Parent=Os07t0163066-00
Chr07	irgsp1_rep	five_prime_UTR	3364464	3364536	.	+	.	Parent=Os07t0163066-00
Chr07	irgsp1_rep	five_prime_UTR	3365128	3365177	.	+	.	Parent=Os07t0163066-00
Chr07	irgsp1_rep	five_prime_UTR	3365418	3365545	.	+	.	Parent=Os07t0163066-00
Chr07	irgsp1_rep	five_prime_UTR	3366164	3366275	.	+	.	Parent=Os07t0163066-00
Chr07	irgsp1_rep	five_prime_UTR	3366625	3366703	.	+	.	Parent=Os07t0163066-00
Chr07	irgsp1_rep	five_prime_UTR	3367209	3367303	.	+	.	Parent=Os07t0163066-00
Chr07	irgsp1_rep	five_prime_UTR	3367456	3367563	.	+	.	Parent=Os07t0163066-00
Chr07	irgsp1_rep	five_prime_UTR	3367808	3367872	.	+	.	Parent=Os07t0163066-00
Chr07	irgsp1_rep	five_prime_UTR	3368180	3368296	.	+	.	Parent=Os07t0163066-00
Chr07	irgsp1_rep	five_prime_UTR	3368595	3368689	.	+	.	Parent=Os07t0163066-00
Chr07	irgsp1_rep	five_prime_UTR	3369334	3369443	.	+	.	Parent=Os07t0163066-00
Chr07	irgsp1_rep	CDS	3369444	3369476	.	+	0	Parent=Os07t0163066-00
Chr07	irgsp1_rep	CDS	3369563	3369684	.	+	0	Parent=Os07t0163066-00
Chr07	irgsp1_rep	CDS	3369770	3369984	.	+	1	Parent=Os07t0163066-00
Chr07	irgsp1_rep	mRNA	3370206	3370264	.	+	.	ID=Os07t0163132-00;Name=Os07t0163132-00;Locus_id=Os07g0163132;Note=Non-protein coding transcript.;Transcript_evidence=X06284 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0163132-00
Chr07	irgsp1_rep	exon	3370206	3370264	.	+	.	Parent=Os07t0163132-00
Chr07	irgsp1_rep	mRNA	3372597	3374464	.	-	.	ID=Os07t0163200-00;Name=Os07t0163200-00;Locus_id=Os07g0163200;Oryzabase Gene Symbol Synonym(s)=OsFbox344%2C Os_F0183;Oryzabase Gene Name Synonym(s)=F-box protein 344;Note=FBD domain containing protein.;Transcript_evidence=AK375692 (DDBJ);ORF_evidence=Q8H3K2 (UniProt);InterPro=FBD (IPR013596);Oryzabase=17120;TENOR=Os07t0163200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	3373559	3374464	.	-	0	Parent=Os07t0163200-00
Chr07	irgsp1_rep	CDS	3373292	3373447	.	-	0	Parent=Os07t0163200-00
Chr07	irgsp1_rep	CDS	3372597	3373019	.	-	0	Parent=Os07t0163200-00
Chr07	irgsp1_rep	mRNA	3388224	3400176	.	+	.	ID=Os07t0163500-01;Name=Os07t0163500-01;Locus_id=Os07g0163500;RAP-DB Gene Symbol Synonym(s)=WP1%2C OsValRS2%2C ValRS2;RAP-DB Gene Name Synonym(s)=WHITE PANICLE 1%2C Val-tRNA Synthetase 2%2C WHITE PANICLE1%2C white panicle 1;CGSNL Gene Symbol=WP1;CGSNL Gene Name=WHITE PANICLE 1;Oryzabase Gene Symbol Synonym(s)=OsValRS2%2C ValRS2;Oryzabase Gene Name Synonym(s)=Val-tRNA Synthetase 2%2C WHITE PANICLE1%2C white panicle 1;Note=Val-tRNA synthetase%2C Regulation of chloroplast ribosome biogenesis%2C Early chloroplast development;Transcript_evidence=Inferred from literature;ORF_evidence=B8B7K0 (indica);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: valyl-tRNA aminoacylation (GO:0006438),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA editing activity (GO:0002161),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: valine-tRNA ligase activity (GO:0004832),Molecular Function: ATP binding (GO:0005524),Cellular Component: cytoplasm (GO:0005737);InterPro=Valine-tRNA ligase (IPR002303),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Aminoacyl-tRNA synthetase%2C class Ia (IPR002300),Valyl/Leucyl/Isoleucyl-tRNA synthetase%2C editing domain (IPR009008),Aminoacyl-tRNA synthetase%2C class 1a%2C anticodon-binding (IPR009080),Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase%2C anticodon-binding (IPR013155),tRNA-binding arm (IPR010978),Valyl-tRNA synthetase%2C  tRNA-binding arm (IPR019499),Aminoacyl-tRNA synthetase%2C class I%2C conserved site (IPR001412);Manual Curation=April 1%2C 2016;Literature_PMID=26839129;Oryzabase=20931;TENOR=Os07t0163500-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	3388224	3388341	.	+	0	Parent=Os07t0163500-01
Chr07	irgsp1_rep	CDS	3388427	3388514	.	+	2	Parent=Os07t0163500-01
Chr07	irgsp1_rep	CDS	3389514	3389640	.	+	1	Parent=Os07t0163500-01
Chr07	irgsp1_rep	CDS	3390196	3390279	.	+	0	Parent=Os07t0163500-01
Chr07	irgsp1_rep	CDS	3390398	3390492	.	+	0	Parent=Os07t0163500-01
Chr07	irgsp1_rep	CDS	3390911	3391002	.	+	1	Parent=Os07t0163500-01
Chr07	irgsp1_rep	CDS	3391174	3391227	.	+	2	Parent=Os07t0163500-01
Chr07	irgsp1_rep	CDS	3392069	3392121	.	+	2	Parent=Os07t0163500-01
Chr07	irgsp1_rep	CDS	3392320	3392387	.	+	0	Parent=Os07t0163500-01
Chr07	irgsp1_rep	CDS	3392625	3392700	.	+	1	Parent=Os07t0163500-01
Chr07	irgsp1_rep	CDS	3393007	3393090	.	+	0	Parent=Os07t0163500-01
Chr07	irgsp1_rep	CDS	3393641	3393789	.	+	0	Parent=Os07t0163500-01
Chr07	irgsp1_rep	CDS	3394223	3394340	.	+	1	Parent=Os07t0163500-01
Chr07	irgsp1_rep	CDS	3394431	3394547	.	+	0	Parent=Os07t0163500-01
Chr07	irgsp1_rep	CDS	3394798	3395018	.	+	0	Parent=Os07t0163500-01
Chr07	irgsp1_rep	CDS	3395444	3395533	.	+	1	Parent=Os07t0163500-01
Chr07	irgsp1_rep	CDS	3395680	3395791	.	+	1	Parent=Os07t0163500-01
Chr07	irgsp1_rep	CDS	3396242	3396352	.	+	0	Parent=Os07t0163500-01
Chr07	irgsp1_rep	CDS	3396427	3396564	.	+	0	Parent=Os07t0163500-01
Chr07	irgsp1_rep	CDS	3396656	3396706	.	+	0	Parent=Os07t0163500-01
Chr07	irgsp1_rep	CDS	3396786	3396898	.	+	0	Parent=Os07t0163500-01
Chr07	irgsp1_rep	CDS	3398430	3398577	.	+	1	Parent=Os07t0163500-01
Chr07	irgsp1_rep	CDS	3398674	3398778	.	+	0	Parent=Os07t0163500-01
Chr07	irgsp1_rep	CDS	3398865	3398966	.	+	0	Parent=Os07t0163500-01
Chr07	irgsp1_rep	CDS	3399343	3399415	.	+	0	Parent=Os07t0163500-01
Chr07	irgsp1_rep	CDS	3399495	3399661	.	+	2	Parent=Os07t0163500-01
Chr07	irgsp1_rep	CDS	3399754	3399876	.	+	0	Parent=Os07t0163500-01
Chr07	irgsp1_rep	three_prime_UTR	3399877	3400176	.	+	.	Parent=Os07t0163500-01
Chr07	irgsp1_rep	mRNA	3420545	3424487	.	+	.	ID=Os07t0163800-01;Name=Os07t0163800-01;Locus_id=Os07g0163800;Oryzabase Gene Symbol Synonym(s)=OsM5%2C M5%2C OsM5a%2C OsUBP5-2%2C UBP5-2%2C OsUBP13%2C UBP13;Oryzabase Gene Name Synonym(s)=single domain MDC protein 5%2C single MATH domain containing protein 5%2C ubiquitin-specific processing protease 5-2%2C Ubiquitin-specific protease 13;Note=Similar to predicted protein.;Transcript_evidence=AK241926 (DDBJ%2C Best hit);ORF_evidence=B0BLB2 (UniProt);NIAS_FLcDNA=J075076O05;Oryzabase=21186;TENOR=Os07t0163800-01;KEGG=Os07t0163800-01 (EC:3.1.2.15)
Chr07	irgsp1_rep	five_prime_UTR	3420545	3420545	.	+	.	Parent=Os07t0163800-01
Chr07	irgsp1_rep	CDS	3420546	3420722	.	+	0	Parent=Os07t0163800-01
Chr07	irgsp1_rep	CDS	3420819	3420920	.	+	0	Parent=Os07t0163800-01
Chr07	irgsp1_rep	CDS	3421008	3421079	.	+	0	Parent=Os07t0163800-01
Chr07	irgsp1_rep	CDS	3421198	3421263	.	+	0	Parent=Os07t0163800-01
Chr07	irgsp1_rep	CDS	3421350	3421415	.	+	0	Parent=Os07t0163800-01
Chr07	irgsp1_rep	CDS	3421524	3421607	.	+	0	Parent=Os07t0163800-01
Chr07	irgsp1_rep	CDS	3422486	3422602	.	+	0	Parent=Os07t0163800-01
Chr07	irgsp1_rep	CDS	3423601	3423675	.	+	0	Parent=Os07t0163800-01
Chr07	irgsp1_rep	CDS	3423760	3423843	.	+	0	Parent=Os07t0163800-01
Chr07	irgsp1_rep	CDS	3423986	3424027	.	+	0	Parent=Os07t0163800-01
Chr07	irgsp1_rep	three_prime_UTR	3424028	3424487	.	+	.	Parent=Os07t0163800-01
Chr07	irgsp1_rep	mRNA	3426467	3428467	.	-	.	ID=Os07t0163900-00;Name=Os07t0163900-00;Locus_id=Os07g0163900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=BT037557 (DDBJ);ORF_evidence=A2YIG2 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os07t0163900-00
Chr07	irgsp1_rep	CDS	3426512	3428467	.	-	0	Parent=Os07t0163900-00
Chr07	irgsp1_rep	three_prime_UTR	3426467	3426511	.	-	.	Parent=Os07t0163900-00
Chr07	irgsp1_rep	mRNA	3429482	3434732	.	-	.	ID=Os07t0164000-01;Name=Os07t0164000-01;Locus_id=Os07g0164000;RAP-DB Gene Symbol Synonym(s)=WAF1%2C waf1%2C waf1-1%2C waf1-2%2C HEN1;RAP-DB Gene Name Synonym(s)=WAVY LEAF 1%2C wavy leaf 1-1%2C wavy leaf 1-2%2C WAVY LEAF1%2C HUA ENHANCER 1;CGSNL Gene Symbol=WAF1;CGSNL Gene Name=WAVY LEAF 1;Oryzabase Gene Symbol Synonym(s)=waf1%2C waf1-1%2C waf1-2%2C HEN1;Oryzabase Gene Name Synonym(s)=wavy leaf 1-1%2C wavy leaf 1-2%2C WAVY LEAF1%2C HUA ENHANCER 1;Note=Small RNA methyltransferase%2C Small RNA stabilization%2C Regulation of shoot development;Transcript_evidence=AB583903 (Kinmaze%2C 5th intron is retained),AK111609;ORF_evidence=B9FVM9,Q0D8F3;GO=Biological Process: RNA methylation (GO:0001510),Molecular Function: O-methyltransferase activity (GO:0008171),Molecular Function: RNA methyltransferase activity (GO:0008173);InterPro=3'-RNA ribose 2'-O-methyltransferase%2C Hen1 (IPR026610),Double-stranded RNA-binding domain (IPR014720),S-adenosyl-L-methionine-dependent methyltransferase (IPR029063);NIAS_FLcDNA=J013102N10;Manual Curation=July 2%2C 2015;Literature_PMID=20805329;Oryzabase=6478;Expression=AK111609;TENOR=Os07t0164000-01;KEGG=Os07t0164000-01
Chr07	irgsp1_rep	five_prime_UTR	3434541	3434732	.	-	.	Parent=Os07t0164000-01
Chr07	irgsp1_rep	CDS	3434250	3434540	.	-	0	Parent=Os07t0164000-01
Chr07	irgsp1_rep	CDS	3433641	3433733	.	-	0	Parent=Os07t0164000-01
Chr07	irgsp1_rep	CDS	3432586	3433043	.	-	0	Parent=Os07t0164000-01
Chr07	irgsp1_rep	CDS	3432255	3432503	.	-	1	Parent=Os07t0164000-01
Chr07	irgsp1_rep	CDS	3431824	3432001	.	-	1	Parent=Os07t0164000-01
Chr07	irgsp1_rep	CDS	3431067	3431745	.	-	0	Parent=Os07t0164000-01
Chr07	irgsp1_rep	CDS	3430821	3430972	.	-	2	Parent=Os07t0164000-01
Chr07	irgsp1_rep	CDS	3430629	3430745	.	-	0	Parent=Os07t0164000-01
Chr07	irgsp1_rep	CDS	3430390	3430518	.	-	0	Parent=Os07t0164000-01
Chr07	irgsp1_rep	CDS	3429675	3430109	.	-	0	Parent=Os07t0164000-01
Chr07	irgsp1_rep	three_prime_UTR	3429482	3429674	.	-	.	Parent=Os07t0164000-01
Chr07	irgsp1_rep	mRNA	3436026	3444708	.	-	.	ID=Os07t0164100-01;Name=Os07t0164100-01;Locus_id=Os07g0164100;Oryzabase Gene Symbol Synonym(s)=HDA704;Oryzabase Gene Name Synonym(s)=histone deacetylase 704;Note=Histone deacetylase superfamily protein.;Transcript_evidence=AK111557 (DDBJ%2C Best hit);ORF_evidence=C1IC96 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Histone deacetylase superfamily (IPR000286),Zinc finger%2C RanBP2-type (IPR001876),Histone deacetylase domain (IPR023801);NIAS_FLcDNA=J013057F02;Oryzabase=19072;Expression=AK111557;TENOR=Os07t0164100-01;KEGG=Os07t0164100-01
Chr07	irgsp1_rep	five_prime_UTR	3444636	3444708	.	-	.	Parent=Os07t0164100-01
Chr07	irgsp1_rep	five_prime_UTR	3443839	3443856	.	-	.	Parent=Os07t0164100-01
Chr07	irgsp1_rep	CDS	3443338	3443838	.	-	0	Parent=Os07t0164100-01
Chr07	irgsp1_rep	CDS	3443123	3443213	.	-	0	Parent=Os07t0164100-01
Chr07	irgsp1_rep	CDS	3442898	3442956	.	-	2	Parent=Os07t0164100-01
Chr07	irgsp1_rep	CDS	3442286	3442361	.	-	0	Parent=Os07t0164100-01
Chr07	irgsp1_rep	CDS	3441638	3441702	.	-	2	Parent=Os07t0164100-01
Chr07	irgsp1_rep	CDS	3441465	3441520	.	-	0	Parent=Os07t0164100-01
Chr07	irgsp1_rep	CDS	3441160	3441283	.	-	1	Parent=Os07t0164100-01
Chr07	irgsp1_rep	CDS	3440907	3441032	.	-	0	Parent=Os07t0164100-01
Chr07	irgsp1_rep	CDS	3440722	3440772	.	-	0	Parent=Os07t0164100-01
Chr07	irgsp1_rep	CDS	3440515	3440583	.	-	0	Parent=Os07t0164100-01
Chr07	irgsp1_rep	CDS	3440168	3440276	.	-	0	Parent=Os07t0164100-01
Chr07	irgsp1_rep	CDS	3439243	3439322	.	-	2	Parent=Os07t0164100-01
Chr07	irgsp1_rep	CDS	3438519	3438601	.	-	0	Parent=Os07t0164100-01
Chr07	irgsp1_rep	CDS	3438187	3438232	.	-	1	Parent=Os07t0164100-01
Chr07	irgsp1_rep	CDS	3437522	3437690	.	-	0	Parent=Os07t0164100-01
Chr07	irgsp1_rep	CDS	3436267	3436433	.	-	2	Parent=Os07t0164100-01
Chr07	irgsp1_rep	three_prime_UTR	3436026	3436266	.	-	.	Parent=Os07t0164100-01
Chr07	irgsp1_rep	mRNA	3444963	3446865	.	+	.	ID=Os07t0164200-02;Name=Os07t0164200-02;Locus_id=Os07g0164200;Note=Similar to cDNA clone:001-026-G04%2C full insert sequence.;Transcript_evidence=AK107096 (DDBJ%2C Best hit);ORF_evidence=B7E3N0 (UniProt);InterPro=Protein of unknown function DUF3148 (IPR021495);NIAS_FLcDNA=002-121-H07;Expression=AK107096;TENOR=Os07t0164200-02;KEGG=Os07t0164200-02
Chr07	irgsp1_rep	five_prime_UTR	3444963	3444975	.	+	.	Parent=Os07t0164200-02
Chr07	irgsp1_rep	CDS	3444976	3445278	.	+	0	Parent=Os07t0164200-02
Chr07	irgsp1_rep	three_prime_UTR	3445279	3446865	.	+	.	Parent=Os07t0164200-02
Chr07	irgsp1_rep	mRNA	3446343	3450330	.	-	.	ID=Os07t0164300-01;Name=Os07t0164300-01;Locus_id=Os07g0164300;CGSNL Gene Symbol=SYP132;CGSNL Gene Name=SYNTAXIN OF PLANTS 132;Oryzabase Gene Symbol Synonym(s)=OsSYP132;Oryzabase Gene Name Synonym(s)=Syntaxin of Plants132;Note=Similar to syntaxin 132.;Transcript_evidence=AK099351 (DDBJ%2C Best hit),AK073327 (DDBJ%2C Best hit);ORF_evidence=NP_001149376.1 (RefSeq);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: membrane (GO:0016020),Molecular Function: SNAP receptor activity (GO:0005484),Molecular Function: protein binding (GO:0005515);InterPro=Target SNARE coiled-coil domain (IPR000727),Syntaxin%2C N-terminal (IPR006011),Syntaxin/epimorphin%2C conserved site (IPR006012),t-SNARE (IPR010989);NIAS_FLcDNA=J033030B17,J033030B18;Oryzabase=23009;TENOR=Os07t0164300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	3450231	3450330	.	-	.	Parent=Os07t0164300-01
Chr07	irgsp1_rep	CDS	3450213	3450230	.	-	0	Parent=Os07t0164300-01
Chr07	irgsp1_rep	CDS	3449104	3449205	.	-	0	Parent=Os07t0164300-01
Chr07	irgsp1_rep	CDS	3448938	3448994	.	-	0	Parent=Os07t0164300-01
Chr07	irgsp1_rep	CDS	3448726	3448774	.	-	0	Parent=Os07t0164300-01
Chr07	irgsp1_rep	CDS	3448535	3448623	.	-	2	Parent=Os07t0164300-01
Chr07	irgsp1_rep	CDS	3448114	3448187	.	-	0	Parent=Os07t0164300-01
Chr07	irgsp1_rep	CDS	3447975	3448017	.	-	1	Parent=Os07t0164300-01
Chr07	irgsp1_rep	CDS	3447473	3447559	.	-	0	Parent=Os07t0164300-01
Chr07	irgsp1_rep	CDS	3447250	3447327	.	-	0	Parent=Os07t0164300-01
Chr07	irgsp1_rep	CDS	3447048	3447128	.	-	0	Parent=Os07t0164300-01
Chr07	irgsp1_rep	CDS	3446875	3446940	.	-	0	Parent=Os07t0164300-01
Chr07	irgsp1_rep	CDS	3446604	3446771	.	-	0	Parent=Os07t0164300-01
Chr07	irgsp1_rep	three_prime_UTR	3446343	3446603	.	-	.	Parent=Os07t0164300-01
Chr07	irgsp1_rep	mRNA	3453921	3457164	.	+	.	ID=Os07t0164500-01;Name=Os07t0164500-01;Locus_id=Os07g0164500;Note=Similar to predicted protein.;Transcript_evidence=AK242864 (DDBJ%2C Best hit);ORF_evidence=XP_002868773.1 (RefSeq);GO=Cellular Component: endoplasmic reticulum membrane (GO:0005789),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=Glycosyl transferase%2C ALG6/ALG8 (IPR004856);NIAS_FLcDNA=J090074K15;TENOR=Os07t0164500-01;KEGG=Os07t0164500-01 (EC:2.4.1.-)
Chr07	irgsp1_rep	five_prime_UTR	3453921	3454211	.	+	.	Parent=Os07t0164500-01
Chr07	irgsp1_rep	CDS	3454212	3454606	.	+	0	Parent=Os07t0164500-01
Chr07	irgsp1_rep	CDS	3454915	3455110	.	+	1	Parent=Os07t0164500-01
Chr07	irgsp1_rep	CDS	3455207	3455314	.	+	0	Parent=Os07t0164500-01
Chr07	irgsp1_rep	CDS	3455938	3456099	.	+	0	Parent=Os07t0164500-01
Chr07	irgsp1_rep	CDS	3456275	3456527	.	+	0	Parent=Os07t0164500-01
Chr07	irgsp1_rep	CDS	3456615	3457054	.	+	2	Parent=Os07t0164500-01
Chr07	irgsp1_rep	three_prime_UTR	3457055	3457164	.	+	.	Parent=Os07t0164500-01
Chr07	irgsp1_rep	mRNA	3459870	3462736	.	+	.	ID=Os07t0164600-01;Name=Os07t0164600-01;Locus_id=Os07g0164600;Oryzabase Gene Symbol Synonym(s)=OsMED31a%2C MED31a%2C OsMed31_1%2C Med31_1;Oryzabase Gene Name Synonym(s)=Mediator complex protein OsMED31a%2C Mediator 31_1;Note=SOH1 family protein.;Transcript_evidence=AK107727 (DDBJ%2C Best hit);ORF_evidence=A6N0B3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: mediator complex (GO:0016592),Molecular Function: RNA polymerase II transcription cofactor activity (GO:0001104);InterPro=Mediator complex%2C subunit Med31 (IPR008831);NIAS_FLcDNA=002-132-F04;Oryzabase=18697;Expression=AK107727;TENOR=Os07t0164600-01;KEGG=Os07t0164600-01
Chr07	irgsp1_rep	five_prime_UTR	3459870	3460149	.	+	.	Parent=Os07t0164600-01
Chr07	irgsp1_rep	CDS	3460150	3460261	.	+	0	Parent=Os07t0164600-01
Chr07	irgsp1_rep	CDS	3460716	3460812	.	+	2	Parent=Os07t0164600-01
Chr07	irgsp1_rep	CDS	3460901	3460979	.	+	1	Parent=Os07t0164600-01
Chr07	irgsp1_rep	CDS	3461332	3461642	.	+	0	Parent=Os07t0164600-01
Chr07	irgsp1_rep	CDS	3462483	3462492	.	+	1	Parent=Os07t0164600-01
Chr07	irgsp1_rep	three_prime_UTR	3462493	3462736	.	+	.	Parent=Os07t0164600-01
Chr07	irgsp1_rep	mRNA	3465607	3469077	.	-	.	ID=Os07t0164700-01;Name=Os07t0164700-01;Locus_id=Os07g0164700;Note=Similar to Helicase-like protein [Oryza sativa (japonica cultivar-group)].;Transcript_evidence=AK064383 (DDBJ%2C Best hit);ORF_evidence=A3BGV9 (UniProt);NIAS_FLcDNA=002-108-E03;Expression=AK064383;TENOR=Os07t0164700-01;KEGG=Os07t0164700-01
Chr07	irgsp1_rep	five_prime_UTR	3468535	3469077	.	-	.	Parent=Os07t0164700-01
Chr07	irgsp1_rep	five_prime_UTR	3468037	3468096	.	-	.	Parent=Os07t0164700-01
Chr07	irgsp1_rep	five_prime_UTR	3467318	3467417	.	-	.	Parent=Os07t0164700-01
Chr07	irgsp1_rep	five_prime_UTR	3467209	3467226	.	-	.	Parent=Os07t0164700-01
Chr07	irgsp1_rep	CDS	3467163	3467208	.	-	0	Parent=Os07t0164700-01
Chr07	irgsp1_rep	CDS	3466907	3467071	.	-	2	Parent=Os07t0164700-01
Chr07	irgsp1_rep	CDS	3466543	3466812	.	-	2	Parent=Os07t0164700-01
Chr07	irgsp1_rep	CDS	3466345	3466427	.	-	2	Parent=Os07t0164700-01
Chr07	irgsp1_rep	CDS	3466185	3466253	.	-	0	Parent=Os07t0164700-01
Chr07	irgsp1_rep	three_prime_UTR	3465607	3466184	.	-	.	Parent=Os07t0164700-01
Chr07	irgsp1_rep	mRNA	3465226	3469053	.	-	.	ID=Os07t0164700-02;Name=Os07t0164700-02;Locus_id=Os07g0164700;Note=Similar to Helicase-like protein [Oryza sativa (japonica cultivar-group)].;Transcript_evidence=AK069302 (DDBJ%2C Best hit);ORF_evidence=A3BGV9 (UniProt);NIAS_FLcDNA=J023018E23;Expression=AK069302;TENOR=Os07t0164700-02;KEGG=Os07t0164700-02
Chr07	irgsp1_rep	five_prime_UTR	3468535	3469053	.	-	.	Parent=Os07t0164700-02
Chr07	irgsp1_rep	five_prime_UTR	3468037	3468096	.	-	.	Parent=Os07t0164700-02
Chr07	irgsp1_rep	five_prime_UTR	3467209	3467417	.	-	.	Parent=Os07t0164700-02
Chr07	irgsp1_rep	CDS	3467163	3467208	.	-	0	Parent=Os07t0164700-02
Chr07	irgsp1_rep	CDS	3466907	3467071	.	-	2	Parent=Os07t0164700-02
Chr07	irgsp1_rep	CDS	3466543	3466812	.	-	2	Parent=Os07t0164700-02
Chr07	irgsp1_rep	CDS	3466345	3466427	.	-	2	Parent=Os07t0164700-02
Chr07	irgsp1_rep	CDS	3466185	3466253	.	-	0	Parent=Os07t0164700-02
Chr07	irgsp1_rep	three_prime_UTR	3465699	3466184	.	-	.	Parent=Os07t0164700-02
Chr07	irgsp1_rep	three_prime_UTR	3465561	3465620	.	-	.	Parent=Os07t0164700-02
Chr07	irgsp1_rep	three_prime_UTR	3465226	3465480	.	-	.	Parent=Os07t0164700-02
Chr07	irgsp1_rep	mRNA	3469431	3471635	.	+	.	ID=Os07t0164800-01;Name=Os07t0164800-01;Locus_id=Os07g0164800;Note=Conserved hypothetical protein.;Transcript_evidence=AK070973 (DDBJ%2C Best hit);ORF_evidence=B8B7K7 (UniProt);NIAS_FLcDNA=J023072F12;Expression=AK070973;TENOR=Os07t0164800-01;KEGG=Os07t0164800-01
Chr07	irgsp1_rep	five_prime_UTR	3469431	3469614	.	+	.	Parent=Os07t0164800-01
Chr07	irgsp1_rep	five_prime_UTR	3470527	3470555	.	+	.	Parent=Os07t0164800-01
Chr07	irgsp1_rep	CDS	3470556	3471383	.	+	0	Parent=Os07t0164800-01
Chr07	irgsp1_rep	three_prime_UTR	3471384	3471635	.	+	.	Parent=Os07t0164800-01
Chr07	irgsp1_rep	mRNA	3471834	3476921	.	-	.	ID=Os07t0164900-01;Name=Os07t0164900-01;Locus_id=Os07g0164900;Oryzabase Gene Symbol Synonym(s)=OsAAO;Oryzabase Gene Name Synonym(s)=ABA Aldehyde Oxidase;Note=Similar to ABA aldehyde oxidase.;Transcript_evidence=AK122123 (DDBJ%2C Best hit);ORF_evidence=E5L4Q7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldehyde oxidase/xanthine dehydrogenase%2C molybdopterin binding (IPR008274);NIAS_FLcDNA=J033131J21;Oryzabase=13228;TENOR=Os07t0164900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	3476915	3476921	.	-	.	Parent=Os07t0164900-01
Chr07	irgsp1_rep	CDS	3476804	3476914	.	-	0	Parent=Os07t0164900-01
Chr07	irgsp1_rep	CDS	3475886	3476095	.	-	0	Parent=Os07t0164900-01
Chr07	irgsp1_rep	CDS	3475115	3475333	.	-	0	Parent=Os07t0164900-01
Chr07	irgsp1_rep	CDS	3473774	3474739	.	-	0	Parent=Os07t0164900-01
Chr07	irgsp1_rep	CDS	3473409	3473501	.	-	0	Parent=Os07t0164900-01
Chr07	irgsp1_rep	CDS	3473041	3473256	.	-	0	Parent=Os07t0164900-01
Chr07	irgsp1_rep	three_prime_UTR	3472690	3473040	.	-	.	Parent=Os07t0164900-01
Chr07	irgsp1_rep	three_prime_UTR	3471834	3472323	.	-	.	Parent=Os07t0164900-01
Chr07	irgsp1_rep	mRNA	3483093	3485872	.	+	.	ID=Os07t0165000-01;Name=Os07t0165000-01;Locus_id=Os07g0165000;Note=Similar to Prolyl-tRNA synthetase.;Transcript_evidence=AK106594 (DDBJ%2C Best hit);ORF_evidence=NP_001149927.1 (RefSeq);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: prolyl-tRNA aminoacylation (GO:0006433),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: proline-tRNA ligase activity (GO:0004827),Molecular Function: ATP binding (GO:0005524);InterPro=Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved domain (IPR002314),Anticodon-binding (IPR004154),Prolyl-tRNA synthetase%2C class IIa%2C archaeal-type (IPR004499),Aminoacyl-tRNA synthetase%2C class II (IPR006195),Prolyl-tRNA synthetase%2C class II%2C C-terminal (IPR016061),Prolyl-tRNA synthetase%2C class II (IPR017449);NIAS_FLcDNA=002-111-H09;Expression=AK106594;TENOR=Os07t0165000-01;KEGG=Os07t0165000-01 (EC:6.1.1.15)
Chr07	irgsp1_rep	five_prime_UTR	3483093	3483154	.	+	.	Parent=Os07t0165000-01
Chr07	irgsp1_rep	five_prime_UTR	3483304	3483313	.	+	.	Parent=Os07t0165000-01
Chr07	irgsp1_rep	CDS	3483314	3483400	.	+	0	Parent=Os07t0165000-01
Chr07	irgsp1_rep	CDS	3483475	3483588	.	+	0	Parent=Os07t0165000-01
Chr07	irgsp1_rep	CDS	3483698	3483904	.	+	0	Parent=Os07t0165000-01
Chr07	irgsp1_rep	CDS	3484139	3484276	.	+	0	Parent=Os07t0165000-01
Chr07	irgsp1_rep	CDS	3484539	3484700	.	+	0	Parent=Os07t0165000-01
Chr07	irgsp1_rep	CDS	3484787	3484986	.	+	0	Parent=Os07t0165000-01
Chr07	irgsp1_rep	CDS	3485319	3485402	.	+	1	Parent=Os07t0165000-01
Chr07	irgsp1_rep	CDS	3485492	3485633	.	+	1	Parent=Os07t0165000-01
Chr07	irgsp1_rep	three_prime_UTR	3485634	3485872	.	+	.	Parent=Os07t0165000-01
Chr07	irgsp1_rep	mRNA	3485972	3488626	.	-	.	ID=Os07t0165100-01;Name=Os07t0165100-01;Locus_id=Os07g0165100;Note=Similar to predicted protein.;Transcript_evidence=AK288413 (DDBJ%2C Best hit);ORF_evidence=NP_197299.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),Phosphoribosyltransferase C-terminal (IPR013583),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=J090031A14;TENOR=Os07t0165100-01;KEGG=Os07t0165100-01
Chr07	irgsp1_rep	five_prime_UTR	3488620	3488626	.	-	.	Parent=Os07t0165100-01
Chr07	irgsp1_rep	CDS	3486163	3488619	.	-	0	Parent=Os07t0165100-01
Chr07	irgsp1_rep	three_prime_UTR	3485972	3486162	.	-	.	Parent=Os07t0165100-01
Chr07	irgsp1_rep	mRNA	3494281	3499214	.	-	.	ID=Os07t0165200-01;Name=Os07t0165200-01;Locus_id=Os07g0165200;Oryzabase Gene Symbol Synonym(s)=OsSTA189;Note=Ankyrin domain containing protein.;Transcript_evidence=AK120764 (DDBJ%2C Best hit);ORF_evidence=Q2HVL8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Regulator of Chromosome condensation%2C RCC1 (IPR000408),Ankyrin repeat (IPR002110),Regulator of Chromosome condensation/beta-lactamase-inhibitor protein II (IPR009091),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J023007H22;Oryzabase=19469;TENOR=Os07t0165200-01
Chr07	irgsp1_rep	five_prime_UTR	3499085	3499214	.	-	.	Parent=Os07t0165200-01
Chr07	irgsp1_rep	five_prime_UTR	3497822	3498169	.	-	.	Parent=Os07t0165200-01
Chr07	irgsp1_rep	five_prime_UTR	3497716	3497739	.	-	.	Parent=Os07t0165200-01
Chr07	irgsp1_rep	CDS	3497446	3497715	.	-	0	Parent=Os07t0165200-01
Chr07	irgsp1_rep	CDS	3496831	3497008	.	-	0	Parent=Os07t0165200-01
Chr07	irgsp1_rep	CDS	3496481	3496703	.	-	2	Parent=Os07t0165200-01
Chr07	irgsp1_rep	CDS	3496124	3496266	.	-	1	Parent=Os07t0165200-01
Chr07	irgsp1_rep	CDS	3495733	3496022	.	-	2	Parent=Os07t0165200-01
Chr07	irgsp1_rep	CDS	3495428	3495640	.	-	0	Parent=Os07t0165200-01
Chr07	irgsp1_rep	CDS	3494863	3495348	.	-	0	Parent=Os07t0165200-01
Chr07	irgsp1_rep	CDS	3494281	3494740	.	-	0	Parent=Os07t0165200-01
Chr07	irgsp1_rep	mRNA	3505469	3508474	.	+	.	ID=Os07t0165300-00;Name=Os07t0165300-00;Locus_id=Os07g0165300;Note=Hypothetical conserved gene.;Transcript_evidence=CT836083 (DDBJ%2C Best hit);ORF_evidence=Q7F0Q0 (UniProt);TENOR=Os07t0165300-00;KEGG=Os07t0165300-00
Chr07	irgsp1_rep	five_prime_UTR	3505469	3505516	.	+	.	Parent=Os07t0165300-00
Chr07	irgsp1_rep	CDS	3505517	3505738	.	+	0	Parent=Os07t0165300-00
Chr07	irgsp1_rep	CDS	3506851	3506978	.	+	0	Parent=Os07t0165300-00
Chr07	irgsp1_rep	CDS	3508246	3508321	.	+	1	Parent=Os07t0165300-00
Chr07	irgsp1_rep	three_prime_UTR	3508322	3508474	.	+	.	Parent=Os07t0165300-00
Chr07	irgsp1_rep	mRNA	3533971	3534744	.	-	.	ID=Os07t0165650-01;Name=Os07t0165650-01;Locus_id=Os07g0165650;Note=Hypothetical gene.;Transcript_evidence=AK287553 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J065018O20;TENOR=Os07t0165650-01;KEGG=Os07t0165650-01
Chr07	irgsp1_rep	five_prime_UTR	3534579	3534744	.	-	.	Parent=Os07t0165650-01
Chr07	irgsp1_rep	CDS	3534336	3534578	.	-	0	Parent=Os07t0165650-01
Chr07	irgsp1_rep	three_prime_UTR	3533971	3534335	.	-	.	Parent=Os07t0165650-01
Chr07	irgsp1_rep	mRNA	3539543	3542189	.	-	.	ID=Os07t0165700-01;Name=Os07t0165700-01;Locus_id=Os07g0165700;Note=Conserved hypothetical protein.;Transcript_evidence=AK106262 (DDBJ%2C Best hit);ORF_evidence=B8B7L2 (UniProt);NIAS_FLcDNA=002-100-F08;Expression=AK106262;TENOR=Os07t0165700-01;KEGG=Os07t0165700-01
Chr07	irgsp1_rep	five_prime_UTR	3542105	3542189	.	-	.	Parent=Os07t0165700-01
Chr07	irgsp1_rep	CDS	3541613	3542104	.	-	0	Parent=Os07t0165700-01
Chr07	irgsp1_rep	CDS	3540855	3540959	.	-	0	Parent=Os07t0165700-01
Chr07	irgsp1_rep	CDS	3539974	3540326	.	-	0	Parent=Os07t0165700-01
Chr07	irgsp1_rep	CDS	3539887	3539890	.	-	1	Parent=Os07t0165700-01
Chr07	irgsp1_rep	three_prime_UTR	3539543	3539886	.	-	.	Parent=Os07t0165700-01
Chr07	irgsp1_rep	mRNA	3547492	3548592	.	+	.	ID=Os07t0165900-00;Name=Os07t0165900-00;Locus_id=Os07g0165900;CGSNL Gene Symbol=UCL21;CGSNL Gene Name=UCLACYANIN-LIKE PROTEIN 21;Oryzabase Gene Symbol Synonym(s)=OsUCL21;Oryzabase Gene Name Synonym(s)=uclacyanin-like protein 21;Note=Plastocyanin-like domain containing protein.;Transcript_evidence=EU952035 (DDBJ);ORF_evidence=Q7F0P9 (UniProt);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);Oryzabase=9770;TENOR=Os07t0165900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	3547492	3547500	.	+	.	Parent=Os07t0165900-00
Chr07	irgsp1_rep	CDS	3547501	3547669	.	+	0	Parent=Os07t0165900-00
Chr07	irgsp1_rep	CDS	3548255	3548592	.	+	2	Parent=Os07t0165900-00
Chr07	irgsp1_rep	mRNA	3561191	3569122	.	-	.	ID=Os07t0166100-01;Name=Os07t0166100-01;Locus_id=Os07g0166100;Note=Membrane attack complex component/perforin/complement C9 family protein.;Transcript_evidence=AK069169 (DDBJ%2C Best hit);ORF_evidence=Q1SKW8 (UniProt);InterPro=Membrane attack complex component/perforin (MACPF) domain (IPR020864);NIAS_FLcDNA=J023008O18;Expression=AK069169;TENOR=Os07t0166100-01;KEGG=Os07t0166100-01
Chr07	irgsp1_rep	five_prime_UTR	3568858	3569122	.	-	.	Parent=Os07t0166100-01
Chr07	irgsp1_rep	five_prime_UTR	3566486	3566608	.	-	.	Parent=Os07t0166100-01
Chr07	irgsp1_rep	CDS	3566222	3566485	.	-	0	Parent=Os07t0166100-01
Chr07	irgsp1_rep	CDS	3564972	3565210	.	-	0	Parent=Os07t0166100-01
Chr07	irgsp1_rep	CDS	3564399	3564600	.	-	1	Parent=Os07t0166100-01
Chr07	irgsp1_rep	CDS	3563728	3563796	.	-	0	Parent=Os07t0166100-01
Chr07	irgsp1_rep	CDS	3563468	3563654	.	-	0	Parent=Os07t0166100-01
Chr07	irgsp1_rep	CDS	3562532	3562698	.	-	2	Parent=Os07t0166100-01
Chr07	irgsp1_rep	CDS	3561403	3562101	.	-	0	Parent=Os07t0166100-01
Chr07	irgsp1_rep	three_prime_UTR	3561191	3561402	.	-	.	Parent=Os07t0166100-01
Chr07	irgsp1_rep	mRNA	3566767	3570883	.	-	.	ID=Os07t0166300-00;Name=Os07t0166300-00;Locus_id=Os07g0166300;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os07t0166300-00
Chr07	irgsp1_rep	CDS	3570722	3570883	.	-	0	Parent=Os07t0166300-00
Chr07	irgsp1_rep	CDS	3566955	3567024	.	-	0	Parent=Os07t0166300-00
Chr07	irgsp1_rep	CDS	3566767	3566795	.	-	2	Parent=Os07t0166300-00
Chr07	irgsp1_rep	mRNA	3573154	3573754	.	-	.	ID=Os07t0166500-00;Name=Os07t0166500-00;Locus_id=Os07g0166500;Note=Similar to OSJNba0093F12.13 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XNU5 (UniProt);TENOR=Os07t0166500-00
Chr07	irgsp1_rep	CDS	3573614	3573754	.	-	0	Parent=Os07t0166500-00
Chr07	irgsp1_rep	CDS	3573154	3573462	.	-	0	Parent=Os07t0166500-00
Chr07	irgsp1_rep	mRNA	3574979	3576767	.	+	.	ID=Os07t0166600-01;Name=Os07t0166600-01;Locus_id=Os07g0166600;Oryzabase Gene Name Synonym(s)=Sm gene%2C Sm family protein;Note=Conserved hypothetical protein.;Transcript_evidence=AK109573 (DDBJ%2C Best hit);ORF_evidence=B9FVP0 (UniProt);NIAS_FLcDNA=002-132-F03;Oryzabase=15652;Expression=AK109573;TENOR=Os07t0166600-01;KEGG=Os07t0166600-01
Chr07	irgsp1_rep	CDS	3574979	3575296	.	+	0	Parent=Os07t0166600-01
Chr07	irgsp1_rep	three_prime_UTR	3575297	3575304	.	+	.	Parent=Os07t0166600-01
Chr07	irgsp1_rep	three_prime_UTR	3576480	3576767	.	+	.	Parent=Os07t0166600-01
Chr07	irgsp1_rep	mRNA	3583172	3588346	.	+	.	ID=Os07t0166700-01;Name=Os07t0166700-01;Locus_id=Os07g0166700;Note=Similar to Transmembrane protein kinase.;Transcript_evidence=AK242686 (DDBJ%2C Best hit);ORF_evidence=Q7XBA0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J090033M17;TENOR=Os07t0166700-01;KEGG=Os07t0166700-01
Chr07	irgsp1_rep	five_prime_UTR	3583172	3583345	.	+	.	Parent=Os07t0166700-01
Chr07	irgsp1_rep	five_prime_UTR	3583467	3583970	.	+	.	Parent=Os07t0166700-01
Chr07	irgsp1_rep	CDS	3583971	3585354	.	+	0	Parent=Os07t0166700-01
Chr07	irgsp1_rep	CDS	3585881	3586014	.	+	2	Parent=Os07t0166700-01
Chr07	irgsp1_rep	CDS	3586426	3586666	.	+	0	Parent=Os07t0166700-01
Chr07	irgsp1_rep	CDS	3586760	3586968	.	+	2	Parent=Os07t0166700-01
Chr07	irgsp1_rep	CDS	3587082	3587113	.	+	0	Parent=Os07t0166700-01
Chr07	irgsp1_rep	CDS	3587211	3587322	.	+	1	Parent=Os07t0166700-01
Chr07	irgsp1_rep	CDS	3587457	3587738	.	+	0	Parent=Os07t0166700-01
Chr07	irgsp1_rep	three_prime_UTR	3587739	3587770	.	+	.	Parent=Os07t0166700-01
Chr07	irgsp1_rep	three_prime_UTR	3587917	3588346	.	+	.	Parent=Os07t0166700-01
Chr07	irgsp1_rep	mRNA	3589365	3593883	.	-	.	ID=Os07t0166800-01;Name=Os07t0166800-01;Locus_id=Os07g0166800;CGSNL Gene Symbol=UBC7;CGSNL Gene Name=UBIQUITIN-CONJUGATING ENZYME 7;Oryzabase Gene Symbol Synonym(s)=OsUBC7;Oryzabase Gene Name Synonym(s)=Ubiquitin-conjugating enzyme 7;Note=Rad6 (Ubiquitin carrier protein).;Transcript_evidence=AK121382 (DDBJ%2C Best hit);ORF_evidence=C5XAB9 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135),Ubiquitin-conjugating enzyme%2C active site (IPR023313);NIAS_FLcDNA=J023127H21;Oryzabase=19555;Expression=AK121382;TENOR=Os07t0166800-01;KEGG=Os07t0166800-01 (EC:6.3.2.19)
Chr07	irgsp1_rep	five_prime_UTR	3593730	3593883	.	-	.	Parent=Os07t0166800-01
Chr07	irgsp1_rep	CDS	3593605	3593729	.	-	0	Parent=Os07t0166800-01
Chr07	irgsp1_rep	CDS	3593370	3593395	.	-	1	Parent=Os07t0166800-01
Chr07	irgsp1_rep	CDS	3590628	3590717	.	-	2	Parent=Os07t0166800-01
Chr07	irgsp1_rep	CDS	3590420	3590508	.	-	2	Parent=Os07t0166800-01
Chr07	irgsp1_rep	CDS	3589646	3589774	.	-	0	Parent=Os07t0166800-01
Chr07	irgsp1_rep	three_prime_UTR	3589365	3589645	.	-	.	Parent=Os07t0166800-01
Chr07	irgsp1_rep	mRNA	3586107	3593838	.	-	.	ID=Os07t0166800-02;Name=Os07t0166800-02;Locus_id=Os07g0166800;CGSNL Gene Symbol=UBC7;CGSNL Gene Name=UBIQUITIN-CONJUGATING ENZYME 7;Oryzabase Gene Symbol Synonym(s)=OsUBC7;Oryzabase Gene Name Synonym(s)=Ubiquitin-conjugating enzyme 7;Note=Rad6 (Ubiquitin carrier protein).;Transcript_evidence=AK070524 (DDBJ%2C Best hit);ORF_evidence=C5XAB9 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135),Ubiquitin-conjugating enzyme%2C active site (IPR023313);NIAS_FLcDNA=J023055G02;Oryzabase=19555;Expression=AK070524;TENOR=Os07t0166800-02;KEGG=Os07t0166800-02 (EC:6.3.2.19)
Chr07	irgsp1_rep	five_prime_UTR	3593730	3593838	.	-	.	Parent=Os07t0166800-02
Chr07	irgsp1_rep	CDS	3593605	3593729	.	-	0	Parent=Os07t0166800-02
Chr07	irgsp1_rep	CDS	3593370	3593395	.	-	1	Parent=Os07t0166800-02
Chr07	irgsp1_rep	CDS	3590628	3590717	.	-	2	Parent=Os07t0166800-02
Chr07	irgsp1_rep	CDS	3590420	3590508	.	-	2	Parent=Os07t0166800-02
Chr07	irgsp1_rep	CDS	3589646	3589774	.	-	0	Parent=Os07t0166800-02
Chr07	irgsp1_rep	three_prime_UTR	3586107	3589645	.	-	.	Parent=Os07t0166800-02
Chr07	irgsp1_rep	mRNA	3589444	3593774	.	+	.	ID=Os07t0166850-00;Name=Os07t0166850-00;Locus_id=Os07g0166850;Note=Hypothetical gene.;Transcript_evidence=BT016345 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0166850-00;KEGG=Os07t0166850-00
Chr07	irgsp1_rep	five_prime_UTR	3589444	3589753	.	+	.	Parent=Os07t0166850-00
Chr07	irgsp1_rep	five_prime_UTR	3590396	3590435	.	+	.	Parent=Os07t0166850-00
Chr07	irgsp1_rep	CDS	3590436	3590506	.	+	0	Parent=Os07t0166850-00
Chr07	irgsp1_rep	CDS	3590625	3590713	.	+	1	Parent=Os07t0166850-00
Chr07	irgsp1_rep	CDS	3593573	3593757	.	+	2	Parent=Os07t0166850-00
Chr07	irgsp1_rep	three_prime_UTR	3593758	3593774	.	+	.	Parent=Os07t0166850-00
Chr07	irgsp1_rep	mRNA	3595696	3599675	.	+	.	ID=Os07t0167000-01;Name=Os07t0167000-01;Locus_id=Os07g0167000;CGSNL Gene Symbol=EIF3E;CGSNL Gene Name=EUKARYOTIC INITIATION FACTOR 3E;Oryzabase Gene Symbol Synonym(s)=eIF-3e%2C OseIF3e;Oryzabase Gene Name Synonym(s)="eukaryotic translation initiation factor 3%2C subunit e";Note=Similar to Eukaryotic initiation factor 3e.;Transcript_evidence=AK102119 (DDBJ%2C Best hit);ORF_evidence=A0MLU6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Proteasome component (PCI) domain (IPR000717),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Translation initiation factor 3%2C subunit 6%2C eukaryotic (IPR016650),Eukaryotic translation initiation factor 3 (eIF3)%2C subunit 6%2C N-terminal (IPR019010);NIAS_FLcDNA=J033084M22;Oryzabase=21027;Expression=AK102119;TENOR=Os07t0167000-01;KEGG=Os07t0167000-01
Chr07	irgsp1_rep	five_prime_UTR	3595696	3595827	.	+	.	Parent=Os07t0167000-01
Chr07	irgsp1_rep	CDS	3595828	3596118	.	+	0	Parent=Os07t0167000-01
Chr07	irgsp1_rep	CDS	3596633	3596860	.	+	0	Parent=Os07t0167000-01
Chr07	irgsp1_rep	CDS	3596964	3597085	.	+	0	Parent=Os07t0167000-01
Chr07	irgsp1_rep	CDS	3597595	3597814	.	+	1	Parent=Os07t0167000-01
Chr07	irgsp1_rep	CDS	3598282	3598424	.	+	0	Parent=Os07t0167000-01
Chr07	irgsp1_rep	CDS	3598852	3598989	.	+	1	Parent=Os07t0167000-01
Chr07	irgsp1_rep	CDS	3599123	3599228	.	+	1	Parent=Os07t0167000-01
Chr07	irgsp1_rep	three_prime_UTR	3599229	3599675	.	+	.	Parent=Os07t0167000-01
Chr07	irgsp1_rep	mRNA	3595807	3599706	.	+	.	ID=Os07t0167000-02;Name=Os07t0167000-02;Locus_id=Os07g0167000;CGSNL Gene Symbol=EIF3E;CGSNL Gene Name=EUKARYOTIC INITIATION FACTOR 3E;Oryzabase Gene Symbol Synonym(s)=eIF-3e%2C OseIF3e;Oryzabase Gene Name Synonym(s)="eukaryotic translation initiation factor 3%2C subunit e";Note=Similar to Eukaryotic initiation factor 3e.;Transcript_evidence=AK106535 (DDBJ%2C Best hit);ORF_evidence=A0MLU6 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Proteasome component (PCI) domain (IPR000717),Tetratricopeptide-like helical (IPR011990),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Translation initiation factor 3%2C subunit 6%2C eukaryotic (IPR016650),Eukaryotic translation initiation factor 3 (eIF3)%2C subunit 6%2C N-terminal (IPR019010);NIAS_FLcDNA=002-108-B06;Oryzabase=21027;TENOR=Os07t0167000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	3595807	3595827	.	+	.	Parent=Os07t0167000-02
Chr07	irgsp1_rep	CDS	3595828	3596030	.	+	0	Parent=Os07t0167000-02
Chr07	irgsp1_rep	CDS	3596085	3596118	.	+	1	Parent=Os07t0167000-02
Chr07	irgsp1_rep	CDS	3596633	3596860	.	+	0	Parent=Os07t0167000-02
Chr07	irgsp1_rep	CDS	3596964	3597085	.	+	0	Parent=Os07t0167000-02
Chr07	irgsp1_rep	CDS	3597595	3597814	.	+	1	Parent=Os07t0167000-02
Chr07	irgsp1_rep	CDS	3598282	3598424	.	+	0	Parent=Os07t0167000-02
Chr07	irgsp1_rep	CDS	3598852	3598989	.	+	1	Parent=Os07t0167000-02
Chr07	irgsp1_rep	CDS	3599123	3599228	.	+	1	Parent=Os07t0167000-02
Chr07	irgsp1_rep	three_prime_UTR	3599229	3599706	.	+	.	Parent=Os07t0167000-02
Chr07	irgsp1_rep	mRNA	3602446	3610749	.	+	.	ID=Os07t0167100-01;Name=Os07t0167100-01;Locus_id=Os07g0167100;Note=Similar to Yarrowia lipolytica Chromosome A of strain CLIB99 of Yarrowia lipolytica.;Transcript_evidence=AK063292 (DDBJ%2C Best hit);ORF_evidence=XP_002891808.1 (RefSeq);GO=Biological Process: nitrogen compound metabolic process (GO:0006807),Biological Process: NAD biosynthetic process (GO:0009435),Molecular Function: NAD+ synthase (glutamine-hydrolyzing) activity (GO:0003952),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds (GO:0016810);InterPro=Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (IPR003010),NAD synthase (IPR003694),Glutamine-dependent NAD(+) synthetase (IPR014445),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),NAD/GMP synthase (IPR022310);NIAS_FLcDNA=001-113-E04;Expression=AK063292;TENOR=Os07t0167100-01;KEGG=Os07t0167100-01 (EC:6.3.5.1)
Chr07	irgsp1_rep	five_prime_UTR	3602446	3602446	.	+	.	Parent=Os07t0167100-01
Chr07	irgsp1_rep	CDS	3602447	3602669	.	+	0	Parent=Os07t0167100-01
Chr07	irgsp1_rep	CDS	3603570	3603673	.	+	2	Parent=Os07t0167100-01
Chr07	irgsp1_rep	CDS	3604376	3604510	.	+	0	Parent=Os07t0167100-01
Chr07	irgsp1_rep	CDS	3605385	3605553	.	+	0	Parent=Os07t0167100-01
Chr07	irgsp1_rep	CDS	3605922	3606057	.	+	2	Parent=Os07t0167100-01
Chr07	irgsp1_rep	CDS	3607048	3607186	.	+	1	Parent=Os07t0167100-01
Chr07	irgsp1_rep	CDS	3608335	3608511	.	+	0	Parent=Os07t0167100-01
Chr07	irgsp1_rep	CDS	3608722	3608889	.	+	0	Parent=Os07t0167100-01
Chr07	irgsp1_rep	CDS	3609211	3609306	.	+	0	Parent=Os07t0167100-01
Chr07	irgsp1_rep	CDS	3610065	3610193	.	+	0	Parent=Os07t0167100-01
Chr07	irgsp1_rep	CDS	3610287	3610517	.	+	0	Parent=Os07t0167100-01
Chr07	irgsp1_rep	three_prime_UTR	3610518	3610749	.	+	.	Parent=Os07t0167100-01
Chr07	irgsp1_rep	mRNA	3610852	3614403	.	-	.	ID=Os07t0167200-01;Name=Os07t0167200-01;Locus_id=Os07g0167200;Oryzabase Gene Symbol Synonym(s)=OsMB10%2C MB10%2C OsMB10a%2C OsMB10b;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 10%2C MDC protein with a BTB domain 10%2C MDC protein having BTB domain 10;Note=Similar to Zinc finger POZ domain protein (Fragment).;Transcript_evidence=AK120608 (DDBJ%2C Best hit);ORF_evidence=B6TV51 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);NIAS_FLcDNA=J013151F13;Oryzabase=21204;Expression=AK120608;TENOR=Os07t0167200-01;KEGG=Os07t0167200-01
Chr07	irgsp1_rep	five_prime_UTR	3614307	3614403	.	-	.	Parent=Os07t0167200-01
Chr07	irgsp1_rep	CDS	3613864	3614306	.	-	0	Parent=Os07t0167200-01
Chr07	irgsp1_rep	CDS	3612494	3612866	.	-	1	Parent=Os07t0167200-01
Chr07	irgsp1_rep	CDS	3612130	3612403	.	-	0	Parent=Os07t0167200-01
Chr07	irgsp1_rep	CDS	3611142	3611326	.	-	2	Parent=Os07t0167200-01
Chr07	irgsp1_rep	three_prime_UTR	3610852	3611141	.	-	.	Parent=Os07t0167200-01
Chr07	irgsp1_rep	mRNA	3616170	3618158	.	+	.	ID=Os07t0167300-01;Name=Os07t0167300-01;Locus_id=Os07g0167300;Note=Conserved hypothetical protein.;Transcript_evidence=AK108281 (DDBJ%2C Best hit);ORF_evidence=B8B7L8 (UniProt);NIAS_FLcDNA=002-141-D01;Expression=AK108281;TENOR=Os07t0167300-01;KEGG=Os07t0167300-01
Chr07	irgsp1_rep	five_prime_UTR	3616170	3616449	.	+	.	Parent=Os07t0167300-01
Chr07	irgsp1_rep	five_prime_UTR	3616806	3616806	.	+	.	Parent=Os07t0167300-01
Chr07	irgsp1_rep	CDS	3616807	3616932	.	+	0	Parent=Os07t0167300-01
Chr07	irgsp1_rep	CDS	3617308	3617479	.	+	0	Parent=Os07t0167300-01
Chr07	irgsp1_rep	CDS	3617799	3617848	.	+	2	Parent=Os07t0167300-01
Chr07	irgsp1_rep	three_prime_UTR	3617849	3618158	.	+	.	Parent=Os07t0167300-01
Chr07	irgsp1_rep	mRNA	3620456	3630778	.	-	.	ID=Os07t0167500-01;Name=Os07t0167500-01;Locus_id=Os07g0167500;Note=Conserved hypothetical protein.;Transcript_evidence=AK061236 (DDBJ%2C Best hit);ORF_evidence=B9FVP5 (UniProt);NIAS_FLcDNA=006-211-B07;Expression=AK061236;TENOR=Os07t0167500-01;KEGG=Os07t0167500-01
Chr07	irgsp1_rep	five_prime_UTR	3630526	3630778	.	-	.	Parent=Os07t0167500-01
Chr07	irgsp1_rep	CDS	3630442	3630525	.	-	0	Parent=Os07t0167500-01
Chr07	irgsp1_rep	CDS	3630168	3630308	.	-	0	Parent=Os07t0167500-01
Chr07	irgsp1_rep	CDS	3629146	3629364	.	-	0	Parent=Os07t0167500-01
Chr07	irgsp1_rep	CDS	3621428	3621763	.	-	0	Parent=Os07t0167500-01
Chr07	irgsp1_rep	three_prime_UTR	3621399	3621427	.	-	.	Parent=Os07t0167500-01
Chr07	irgsp1_rep	three_prime_UTR	3620456	3620603	.	-	.	Parent=Os07t0167500-01
Chr07	irgsp1_rep	mRNA	3633980	3635156	.	+	.	ID=Os07t0167700-01;Name=Os07t0167700-01;Locus_id=Os07g0167700;Note=Conserved hypothetical protein.;Transcript_evidence=AK099436 (DDBJ%2C Best hit);ORF_evidence=B8B7M1 (UniProt);NIAS_FLcDNA=J013020B02;Expression=AK099436;TENOR=Os07t0167700-01;KEGG=Os07t0167700-01
Chr07	irgsp1_rep	five_prime_UTR	3633980	3634101	.	+	.	Parent=Os07t0167700-01
Chr07	irgsp1_rep	CDS	3634102	3634218	.	+	0	Parent=Os07t0167700-01
Chr07	irgsp1_rep	CDS	3634697	3634855	.	+	0	Parent=Os07t0167700-01
Chr07	irgsp1_rep	three_prime_UTR	3634856	3635156	.	+	.	Parent=Os07t0167700-01
Chr07	irgsp1_rep	mRNA	3645846	3656754	.	-	.	ID=Os07t0168000-01;Name=Os07t0168000-01;Locus_id=Os07g0168000;Note=Similar to Polyribonucleotide phophorylase (Fragment).;Transcript_evidence=AK065622 (DDBJ%2C Best hit);ORF_evidence=O24288 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Biological Process: mRNA catabolic process (GO:0006402),Molecular Function: 3'-5'-exoribonuclease activity (GO:0000175),Molecular Function: RNA binding (GO:0003723),Molecular Function: polyribonucleotide nucleotidyltransferase activity (GO:0004654);InterPro=Exoribonuclease%2C phosphorolytic domain 1 (IPR001247),Ribosomal protein S1%2C RNA-binding domain (IPR003029),K Homology (IPR004087),K Homology%2C type 1 (IPR004088),Polyribonucleotide nucleotidyltransferase (IPR012162),Nucleic acid-binding%2C OB-fold (IPR012340),Exoribonuclease%2C phosphorolytic domain 2 (IPR015847),Polynucleotide phosphorylase%2C phosphorolytic RNA-binding%2C bacterial/organelle-type (IPR015848),Nucleic acid-binding%2C OB-fold-like (IPR016027),K Homology%2C type 1%2C subgroup (IPR018111),Ribosomal protein S5 domain 2-type fold (IPR020568),RNA-binding domain%2C S1 (IPR022967);NIAS_FLcDNA=J013031K22;Expression=AK065622;TENOR=Os07t0168000-01;KEGG=Os07t0168000-01 (EC:2.7.7.8)
Chr07	irgsp1_rep	five_prime_UTR	3656693	3656754	.	-	.	Parent=Os07t0168000-01
Chr07	irgsp1_rep	CDS	3656393	3656692	.	-	0	Parent=Os07t0168000-01
Chr07	irgsp1_rep	CDS	3656003	3656071	.	-	0	Parent=Os07t0168000-01
Chr07	irgsp1_rep	CDS	3655259	3655365	.	-	0	Parent=Os07t0168000-01
Chr07	irgsp1_rep	CDS	3655123	3655165	.	-	1	Parent=Os07t0168000-01
Chr07	irgsp1_rep	CDS	3654960	3655043	.	-	0	Parent=Os07t0168000-01
Chr07	irgsp1_rep	CDS	3654770	3654834	.	-	0	Parent=Os07t0168000-01
Chr07	irgsp1_rep	CDS	3654516	3654672	.	-	1	Parent=Os07t0168000-01
Chr07	irgsp1_rep	CDS	3653321	3653377	.	-	0	Parent=Os07t0168000-01
Chr07	irgsp1_rep	CDS	3652669	3652782	.	-	0	Parent=Os07t0168000-01
Chr07	irgsp1_rep	CDS	3651700	3651960	.	-	0	Parent=Os07t0168000-01
Chr07	irgsp1_rep	CDS	3651418	3651492	.	-	0	Parent=Os07t0168000-01
Chr07	irgsp1_rep	CDS	3650586	3650699	.	-	0	Parent=Os07t0168000-01
Chr07	irgsp1_rep	CDS	3650015	3650107	.	-	0	Parent=Os07t0168000-01
Chr07	irgsp1_rep	CDS	3649110	3649288	.	-	0	Parent=Os07t0168000-01
Chr07	irgsp1_rep	CDS	3648542	3648725	.	-	1	Parent=Os07t0168000-01
Chr07	irgsp1_rep	CDS	3648387	3648434	.	-	0	Parent=Os07t0168000-01
Chr07	irgsp1_rep	CDS	3648186	3648258	.	-	0	Parent=Os07t0168000-01
Chr07	irgsp1_rep	CDS	3647527	3647600	.	-	2	Parent=Os07t0168000-01
Chr07	irgsp1_rep	CDS	3647325	3647432	.	-	0	Parent=Os07t0168000-01
Chr07	irgsp1_rep	CDS	3647164	3647258	.	-	0	Parent=Os07t0168000-01
Chr07	irgsp1_rep	CDS	3646997	3647060	.	-	1	Parent=Os07t0168000-01
Chr07	irgsp1_rep	CDS	3646739	3646792	.	-	0	Parent=Os07t0168000-01
Chr07	irgsp1_rep	CDS	3646617	3646658	.	-	0	Parent=Os07t0168000-01
Chr07	irgsp1_rep	CDS	3646177	3646425	.	-	0	Parent=Os07t0168000-01
Chr07	irgsp1_rep	three_prime_UTR	3645846	3646176	.	-	.	Parent=Os07t0168000-01
Chr07	irgsp1_rep	mRNA	3662374	3663407	.	+	.	ID=Os07t0168300-01;Name=Os07t0168300-01;Locus_id=Os07g0168300;CGSNL Gene Symbol=GSTU11;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 11;Oryzabase Gene Symbol Synonym(s)=OsGSTU11;Oryzabase Gene Name Synonym(s)=Bronze-2 protein;Note=Similar to Glutathione S-transferase GSTU6.;Transcript_evidence=AK061436 (DDBJ%2C Best hit),AK099137 (DDBJ%2C Best hit);ORF_evidence=A2YIJ4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=006-307-B03,J023052D08;Oryzabase=9529;TENOR=Os07t0168300-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	3662374	3662409	.	+	.	Parent=Os07t0168300-01
Chr07	irgsp1_rep	CDS	3662410	3663117	.	+	0	Parent=Os07t0168300-01
Chr07	irgsp1_rep	three_prime_UTR	3663118	3663407	.	+	.	Parent=Os07t0168300-01
Chr07	irgsp1_rep	mRNA	3668837	3672256	.	+	.	ID=Os07t0168600-01;Name=Os07t0168600-01;Locus_id=Os07g0168600;Oryzabase Gene Name Synonym(s)=glucanase;Note=Similar to 3-glucanase.;Transcript_evidence=AK068262 (DDBJ%2C Best hit);ORF_evidence=B6SXV6 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J013149M23;Oryzabase=18127;Expression=AK068262;TENOR=Os07t0168600-01;KEGG=Os07t0168600-01
Chr07	irgsp1_rep	five_prime_UTR	3668837	3669292	.	+	.	Parent=Os07t0168600-01
Chr07	irgsp1_rep	CDS	3669293	3669630	.	+	0	Parent=Os07t0168600-01
Chr07	irgsp1_rep	CDS	3670848	3671949	.	+	1	Parent=Os07t0168600-01
Chr07	irgsp1_rep	three_prime_UTR	3671950	3672256	.	+	.	Parent=Os07t0168600-01
Chr07	irgsp1_rep	mRNA	3668897	3672120	.	+	.	ID=Os07t0168600-02;Name=Os07t0168600-02;Locus_id=Os07g0168600;Oryzabase Gene Name Synonym(s)=glucanase;Note=Similar to 3-glucanase.;Transcript_evidence=AK105668 (DDBJ%2C Best hit);ORF_evidence=B6SXV6 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-200-H12;Oryzabase=18127;Expression=AK105668;TENOR=Os07t0168600-02;KEGG=Os07t0168600-02
Chr07	irgsp1_rep	five_prime_UTR	3668897	3669292	.	+	.	Parent=Os07t0168600-02
Chr07	irgsp1_rep	CDS	3669293	3669630	.	+	0	Parent=Os07t0168600-02
Chr07	irgsp1_rep	CDS	3670848	3671949	.	+	1	Parent=Os07t0168600-02
Chr07	irgsp1_rep	three_prime_UTR	3671950	3672120	.	+	.	Parent=Os07t0168600-02
Chr07	irgsp1_rep	mRNA	3672714	3674413	.	+	.	ID=Os07t0168700-01;Name=Os07t0168700-01;Locus_id=Os07g0168700;Note=Non-protein coding transcript.;Transcript_evidence=AK067067 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013093L19;TENOR=Os07t0168700-01
Chr07	irgsp1_rep	exon	3672714	3674413	.	+	.	Parent=Os07t0168700-01
Chr07	irgsp1_rep	mRNA	3675982	3678406	.	-	.	ID=Os07t0168800-01;Name=Os07t0168800-01;Locus_id=Os07g0168800;CGSNL Gene Symbol=ZFP177;CGSNL Gene Name=ZINC FINGER PROTEIN 177;Oryzabase Gene Symbol Synonym(s)=OsSAP9%2C SAP9%2C ZFP33;Oryzabase Gene Name Synonym(s)=Zinc finger A20 and AN1 domain-containing stress-associated protein 9%2C stress associated protein 9;Note=Zinc finger%2C AN1-type domain containing protein.;Transcript_evidence=AK121813 (DDBJ%2C Best hit);ORF_evidence=Q7Y1W9 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C AN1-type (IPR000058),Zinc finger%2C A20-type (IPR002653);NIAS_FLcDNA=J033098F24;Oryzabase=8371;Expression=AK121813;TENOR=Os07t0168800-01;KEGG=Os07t0168800-01
Chr07	irgsp1_rep	five_prime_UTR	3678263	3678406	.	-	.	Parent=Os07t0168800-01
Chr07	irgsp1_rep	five_prime_UTR	3676713	3676725	.	-	.	Parent=Os07t0168800-01
Chr07	irgsp1_rep	CDS	3676227	3676712	.	-	0	Parent=Os07t0168800-01
Chr07	irgsp1_rep	three_prime_UTR	3675982	3676226	.	-	.	Parent=Os07t0168800-01
Chr07	irgsp1_rep	mRNA	3677609	3678258	.	-	.	ID=Os07t0168900-01;Name=Os07t0168900-01;Locus_id=Os07g0168900;Note=Hypothetical gene.;Transcript_evidence=AK062924 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-108-H11;TENOR=Os07t0168900-01;KEGG=Os07t0168900-01
Chr07	irgsp1_rep	five_prime_UTR	3678258	3678258	.	-	.	Parent=Os07t0168900-01
Chr07	irgsp1_rep	CDS	3678045	3678257	.	-	0	Parent=Os07t0168900-01
Chr07	irgsp1_rep	three_prime_UTR	3677609	3678044	.	-	.	Parent=Os07t0168900-01
Chr07	irgsp1_rep	mRNA	3683525	3685666	.	-	.	ID=Os07t0169100-00;Name=Os07t0169100-00;Locus_id=Os07g0169100;CGSNL Gene Symbol=SAP18;CGSNL Gene Name=STRESS ASSOCIATED PROTEIN GENE 18;Oryzabase Gene Symbol Synonym(s)=OsSAP18;Oryzabase Gene Name Synonym(s)=stress-associated protein 18;Note=Zinc finger A20 domain-containing stress-associated protein 18.;Transcript_evidence=P0C282 (UniProt);ORF_evidence=P0C282 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C A20-type (IPR002653);Oryzabase=18192;TENOR=Os07t0169100-00
Chr07	irgsp1_rep	CDS	3685479	3685666	.	-	0	Parent=Os07t0169100-00
Chr07	irgsp1_rep	CDS	3684523	3684709	.	-	1	Parent=Os07t0169100-00
Chr07	irgsp1_rep	CDS	3683525	3683755	.	-	0	Parent=Os07t0169100-00
Chr07	irgsp1_rep	mRNA	3690095	3692444	.	+	.	ID=Os07t0169300-00;Name=Os07t0169300-00;Locus_id=Os07g0169300;CGSNL Gene Symbol=RLCK224;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 224;Oryzabase Gene Symbol Synonym(s)=OsRLCK224;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 224;Note=EGF-type aspartate/asparagine hydroxylation site domain containing protein.;Transcript_evidence=EU957721 (DDBJ);ORF_evidence=B9FVQ0 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515);InterPro=EGF-type aspartate/asparagine hydroxylation site (IPR000152),Epidermal growth factor-like%2C type 3 (IPR000742),EGF-like calcium-binding (IPR001881),EGF-like calcium-binding%2C conserved site (IPR018097);Oryzabase=18919;TENOR=Os07t0169300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	3690095	3690365	.	+	0	Parent=Os07t0169300-00
Chr07	irgsp1_rep	CDS	3691173	3691324	.	+	2	Parent=Os07t0169300-00
Chr07	irgsp1_rep	CDS	3691399	3691554	.	+	0	Parent=Os07t0169300-00
Chr07	irgsp1_rep	three_prime_UTR	3691555	3692444	.	+	.	Parent=Os07t0169300-00
Chr07	irgsp1_rep	mRNA	3698670	3699146	.	-	.	ID=Os07t0169500-00;Name=Os07t0169500-00;Locus_id=Os07g0169500;CGSNL Gene Symbol=SAP10;CGSNL Gene Name=STRESS ASSOCIATED PROTEIN GENE 10;Oryzabase Gene Symbol Synonym(s)=OsSAP10;Oryzabase Gene Name Synonym(s)=stress-associated protein 10;Note=Zinc finger A20 and AN1 domain-containing stress-associated protein 10.;Transcript_evidence=BT064668 (DDBJ);ORF_evidence=Q69LE0 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C AN1-type (IPR000058),Zinc finger%2C A20-type (IPR002653);Oryzabase=18186;TENOR=Os07t0169500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	3699129	3699146	.	-	.	Parent=Os07t0169500-00
Chr07	irgsp1_rep	CDS	3698670	3699128	.	-	0	Parent=Os07t0169500-00
Chr07	irgsp1_rep	mRNA	3699627	3701537	.	+	.	ID=Os07t0169600-01;Name=Os07t0169600-01;Locus_id=Os07g0169600;CGSNL Gene Symbol=2ODD7;CGSNL Gene Name=2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 7;Oryzabase Gene Symbol Synonym(s)=2-ODD7%2C Os2-ODD7%2C Os2ODD7;Oryzabase Gene Name Synonym(s)=2-oxoglutarate-dependent dioxygenase 7;Note=2OG-Fe(II) oxygenase domain containing protein.;Transcript_evidence=AK121818 (DDBJ%2C Best hit),AK060318 (DDBJ%2C Best hit);ORF_evidence=NP_001152182.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=J033099A15,001-007-F03;Oryzabase=22615;TENOR=Os07t0169600-01
Chr07	irgsp1_rep	five_prime_UTR	3699627	3699689	.	+	.	Parent=Os07t0169600-01
Chr07	irgsp1_rep	CDS	3699690	3699893	.	+	0	Parent=Os07t0169600-01
Chr07	irgsp1_rep	CDS	3699981	3700234	.	+	0	Parent=Os07t0169600-01
Chr07	irgsp1_rep	CDS	3700335	3700656	.	+	1	Parent=Os07t0169600-01
Chr07	irgsp1_rep	CDS	3701080	3701322	.	+	0	Parent=Os07t0169600-01
Chr07	irgsp1_rep	three_prime_UTR	3701323	3701537	.	+	.	Parent=Os07t0169600-01
Chr07	irgsp1_rep	mRNA	3702346	3704648	.	+	.	ID=Os07t0169700-01;Name=Os07t0169700-01;Locus_id=Os07g0169700;RAP-DB Gene Symbol Synonym(s)=GA20OX3%2C OsGA20ox3%2C ga20ox3;RAP-DB Gene Name Synonym(s)=GIBBERELLIN 20-OXIDASE 3%2C rice GA 20-oxidase3%2C GA 20-oxidase 3%2C gibberellin C-20 oxidase 3%2C Gibberellin-20 oxidase 3;CGSNL Gene Symbol=GA20OX3;CGSNL Gene Name=GIBBERELLIN 20-OXIDASE 3;Oryzabase Gene Symbol Synonym(s)=OsGA20ox3%2C ga20ox3;Oryzabase Gene Name Synonym(s)=rice GA 20-oxidase3%2C GA 20-oxidase 3%2C gibberellin C-20 oxidase 3%2C Gibberellin-20 oxidase 3;Note=GA 20-oxidase3%2C GA metabolism;Transcript_evidence=Inferred from literature;ORF_evidence=Q69LD8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Isopenicillin N synthase (IPR002283),Oxoglutarate/iron-dependent oxygenase (IPR005123);Manual Curation=May 18%2C 2009;Literature_PMID=15075394;Oryzabase=5112;TENOR=Os07t0169700-00
Chr07	irgsp1_rep	CDS	3702346	3702824	.	+	0	Parent=Os07t0169700-01
Chr07	irgsp1_rep	CDS	3704024	3704648	.	+	1	Parent=Os07t0169700-01
Chr07	irgsp1_rep	mRNA	3706807	3711327	.	-	.	ID=Os07t0169800-00;Name=Os07t0169800-00;Locus_id=Os07g0169800;Oryzabase Gene Symbol Synonym(s)=OsCAF1-10%2C OsCAF1C;Oryzabase Gene Name Synonym(s)=CCR4-associated factor 1-10%2C carbon catabolite repressor 4-associated factor 1-10%2C CCR4-associated factor 1C%2C carbon catabolite repressor 4-associated factor 1C;Note=Ribonuclease CAF1 domain containing protein.;Transcript_evidence=AK332128 (DDBJ);ORF_evidence=Q69LD7 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676);InterPro=Ribonuclease CAF1 (IPR006941),Ribonuclease H-like (IPR012337);Oryzabase=18269;TENOR=Os07t0169800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	3710704	3711327	.	-	0	Parent=Os07t0169800-00
Chr07	irgsp1_rep	CDS	3706807	3707685	.	-	0	Parent=Os07t0169800-00
Chr07	irgsp1_rep	mRNA	3711848	3712695	.	+	.	ID=Os07t0170000-00;Name=Os07t0170000-00;Locus_id=Os07g0170000;Note=Similar to Brn1-like protein.;Transcript_evidence=EU972358 (DDBJ);ORF_evidence=NP_193054.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);TENOR=Os07t0170000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	3711848	3711858	.	+	.	Parent=Os07t0170000-00
Chr07	irgsp1_rep	CDS	3711859	3712695	.	+	0	Parent=Os07t0170000-00
Chr07	irgsp1_rep	mRNA	3713183	3714162	.	+	.	ID=Os07t0170016-01;Name=Os07t0170016-01;Locus_id=Os07g0170016;Note=Hypothetical gene.;Transcript_evidence=AK289254 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100082E16;TENOR=Os07t0170016-01
Chr07	irgsp1_rep	five_prime_UTR	3713183	3713183	.	+	.	Parent=Os07t0170016-01
Chr07	irgsp1_rep	CDS	3713184	3714162	.	+	0	Parent=Os07t0170016-01
Chr07	irgsp1_rep	mRNA	3717076	3717589	.	-	.	ID=Os07t0170049-00;Name=Os07t0170049-00;Locus_id=Os07g0170049;Note=Conserved hypothetical protein.;Transcript_evidence=AK360980 (DDBJ);ORF_evidence=NP_001059986.2 (RefSeq);TENOR=Os07t0170049-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	3717554	3717589	.	-	.	Parent=Os07t0170049-00
Chr07	irgsp1_rep	CDS	3717432	3717553	.	-	0	Parent=Os07t0170049-00
Chr07	irgsp1_rep	CDS	3717185	3717380	.	-	1	Parent=Os07t0170049-00
Chr07	irgsp1_rep	three_prime_UTR	3717076	3717184	.	-	.	Parent=Os07t0170049-00
Chr07	irgsp1_rep	mRNA	3718709	3722651	.	-	.	ID=Os07t0170100-01;Name=Os07t0170100-01;Locus_id=Os07g0170100;Note=Similar to Branched chain alpha-keto acid dehydrogenase E1 beta subunit.;Transcript_evidence=AK105761 (DDBJ%2C Best hit);ORF_evidence=B6TX05 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Transketolase-like%2C pyrimidine-binding domain (IPR005475),Transketolase%2C C-terminal (IPR005476),Transketolase%2C C-terminal/Pyruvate-ferredoxin oxidoreductase%2C domain II (IPR009014),Transketolase-like%2C C-terminal (IPR015941);NIAS_FLcDNA=001-202-D07;TENOR=Os07t0170100-01
Chr07	irgsp1_rep	five_prime_UTR	3722549	3722651	.	-	.	Parent=Os07t0170100-01
Chr07	irgsp1_rep	CDS	3722343	3722548	.	-	0	Parent=Os07t0170100-01
Chr07	irgsp1_rep	CDS	3721710	3721821	.	-	1	Parent=Os07t0170100-01
Chr07	irgsp1_rep	CDS	3721527	3721562	.	-	0	Parent=Os07t0170100-01
Chr07	irgsp1_rep	CDS	3721322	3721381	.	-	0	Parent=Os07t0170100-01
Chr07	irgsp1_rep	CDS	3720932	3720989	.	-	0	Parent=Os07t0170100-01
Chr07	irgsp1_rep	CDS	3720755	3720852	.	-	2	Parent=Os07t0170100-01
Chr07	irgsp1_rep	CDS	3720359	3720448	.	-	0	Parent=Os07t0170100-01
Chr07	irgsp1_rep	CDS	3720137	3720205	.	-	0	Parent=Os07t0170100-01
Chr07	irgsp1_rep	CDS	3719972	3720058	.	-	0	Parent=Os07t0170100-01
Chr07	irgsp1_rep	CDS	3719336	3719431	.	-	0	Parent=Os07t0170100-01
Chr07	irgsp1_rep	CDS	3719181	3719258	.	-	0	Parent=Os07t0170100-01
Chr07	irgsp1_rep	CDS	3718993	3719079	.	-	0	Parent=Os07t0170100-01
Chr07	irgsp1_rep	CDS	3718876	3718911	.	-	0	Parent=Os07t0170100-01
Chr07	irgsp1_rep	three_prime_UTR	3718709	3718875	.	-	.	Parent=Os07t0170100-01
Chr07	irgsp1_rep	mRNA	3718724	3722592	.	-	.	ID=Os07t0170100-02;Name=Os07t0170100-02;Locus_id=Os07g0170100;Note=Similar to Branched chain alpha-keto acid dehydrogenase E1 beta subunit.;Transcript_evidence=AK102495 (DDBJ%2C Best hit);ORF_evidence=B6TX05 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Transketolase-like%2C pyrimidine-binding domain (IPR005475),Transketolase%2C C-terminal (IPR005476),Transketolase%2C C-terminal/Pyruvate-ferredoxin oxidoreductase%2C domain II (IPR009014),Transketolase-like%2C C-terminal (IPR015941);NIAS_FLcDNA=J033095A19;TENOR=Os07t0170100-02
Chr07	irgsp1_rep	five_prime_UTR	3722549	3722592	.	-	.	Parent=Os07t0170100-02
Chr07	irgsp1_rep	CDS	3722343	3722548	.	-	0	Parent=Os07t0170100-02
Chr07	irgsp1_rep	CDS	3721710	3721821	.	-	1	Parent=Os07t0170100-02
Chr07	irgsp1_rep	CDS	3721527	3721562	.	-	0	Parent=Os07t0170100-02
Chr07	irgsp1_rep	CDS	3721322	3721381	.	-	0	Parent=Os07t0170100-02
Chr07	irgsp1_rep	CDS	3720932	3720989	.	-	0	Parent=Os07t0170100-02
Chr07	irgsp1_rep	CDS	3720755	3720852	.	-	2	Parent=Os07t0170100-02
Chr07	irgsp1_rep	CDS	3720359	3720448	.	-	0	Parent=Os07t0170100-02
Chr07	irgsp1_rep	CDS	3720137	3720205	.	-	0	Parent=Os07t0170100-02
Chr07	irgsp1_rep	CDS	3719972	3720058	.	-	0	Parent=Os07t0170100-02
Chr07	irgsp1_rep	CDS	3719336	3719431	.	-	0	Parent=Os07t0170100-02
Chr07	irgsp1_rep	CDS	3719181	3719258	.	-	0	Parent=Os07t0170100-02
Chr07	irgsp1_rep	CDS	3718993	3719079	.	-	0	Parent=Os07t0170100-02
Chr07	irgsp1_rep	CDS	3718876	3718911	.	-	0	Parent=Os07t0170100-02
Chr07	irgsp1_rep	three_prime_UTR	3718724	3718875	.	-	.	Parent=Os07t0170100-02
Chr07	irgsp1_rep	mRNA	3725057	3726449	.	+	.	ID=Os07t0170200-00;Name=Os07t0170200-00;Locus_id=Os07g0170200;Note=Similar to predicted protein.;Transcript_evidence=CT836091 (DDBJ%2C Best hit);ORF_evidence=NP_179964.2 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: endonuclease activity (GO:0004519);InterPro=HNH endonuclease (IPR002711),HNH nuclease (IPR003615);TENOR=Os07t0170200-00;KEGG=Os07t0170200-00
Chr07	irgsp1_rep	CDS	3725057	3725107	.	+	0	Parent=Os07t0170200-00
Chr07	irgsp1_rep	CDS	3725251	3725325	.	+	0	Parent=Os07t0170200-00
Chr07	irgsp1_rep	CDS	3725486	3725577	.	+	0	Parent=Os07t0170200-00
Chr07	irgsp1_rep	CDS	3725762	3725843	.	+	1	Parent=Os07t0170200-00
Chr07	irgsp1_rep	CDS	3725986	3726069	.	+	0	Parent=Os07t0170200-00
Chr07	irgsp1_rep	CDS	3726174	3726293	.	+	0	Parent=Os07t0170200-00
Chr07	irgsp1_rep	three_prime_UTR	3726294	3726449	.	+	.	Parent=Os07t0170200-00
Chr07	irgsp1_rep	mRNA	3726683	3731161	.	-	.	ID=Os07t0170300-01;Name=Os07t0170300-01;Locus_id=Os07g0170300;Oryzabase Gene Name Synonym(s)=YT521-B domain protein;Note=YT521-B-like protein family protein.;Transcript_evidence=AK072392 (DDBJ%2C Best hit);ORF_evidence=B6U208 (UniProt);InterPro=YTH domain (IPR007275);NIAS_FLcDNA=J023075O16;Oryzabase=21061;Expression=AK072392;TENOR=Os07t0170300-01;KEGG=Os07t0170300-01
Chr07	irgsp1_rep	five_prime_UTR	3730988	3731161	.	-	.	Parent=Os07t0170300-01
Chr07	irgsp1_rep	five_prime_UTR	3730111	3730113	.	-	.	Parent=Os07t0170300-01
Chr07	irgsp1_rep	CDS	3729981	3730110	.	-	0	Parent=Os07t0170300-01
Chr07	irgsp1_rep	CDS	3729807	3729871	.	-	2	Parent=Os07t0170300-01
Chr07	irgsp1_rep	CDS	3729187	3729654	.	-	0	Parent=Os07t0170300-01
Chr07	irgsp1_rep	CDS	3728287	3728838	.	-	0	Parent=Os07t0170300-01
Chr07	irgsp1_rep	CDS	3727983	3728195	.	-	0	Parent=Os07t0170300-01
Chr07	irgsp1_rep	CDS	3727694	3727837	.	-	0	Parent=Os07t0170300-01
Chr07	irgsp1_rep	CDS	3727102	3727338	.	-	0	Parent=Os07t0170300-01
Chr07	irgsp1_rep	three_prime_UTR	3726683	3727101	.	-	.	Parent=Os07t0170300-01
Chr07	irgsp1_rep	mRNA	3727685	3728433	.	+	.	ID=Os07t0170400-00;Name=Os07t0170400-00;Locus_id=Os07g0170400;Note=Non-protein coding transcript.;Transcript_evidence=BT016473 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0170400-00
Chr07	irgsp1_rep	exon	3727685	3727839	.	+	.	Parent=Os07t0170400-00
Chr07	irgsp1_rep	exon	3727991	3728193	.	+	.	Parent=Os07t0170400-00
Chr07	irgsp1_rep	exon	3728285	3728433	.	+	.	Parent=Os07t0170400-00
Chr07	irgsp1_rep	mRNA	3734562	3735397	.	-	.	ID=Os07t0170500-01;Name=Os07t0170500-01;Locus_id=Os07g0170500;Note=Conserved hypothetical protein.;Transcript_evidence=AK240864 (DDBJ%2C Best hit);ORF_evidence=NP_001175070.1 (RefSeq);NIAS_FLcDNA=J065023G06;TENOR=Os07t0170500-01;KEGG=Os07t0170500-01
Chr07	irgsp1_rep	CDS	3735155	3735397	.	-	0	Parent=Os07t0170500-01
Chr07	irgsp1_rep	CDS	3734712	3734864	.	-	0	Parent=Os07t0170500-01
Chr07	irgsp1_rep	three_prime_UTR	3734562	3734711	.	-	.	Parent=Os07t0170500-01
Chr07	irgsp1_rep	mRNA	3745385	3749974	.	+	.	ID=Os07t0170800-01;Name=Os07t0170800-01;Locus_id=Os07g0170800;Oryzabase Gene Symbol Synonym(s)=OsFbox345%2C Os_F0495;Oryzabase Gene Name Synonym(s)=F-box protein 345;Note=Similar to F-box domain containing protein.;Transcript_evidence=AK105849 (DDBJ%2C Best hit);ORF_evidence=NP_001151302.1 (RefSeq);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=001-203-G07;Oryzabase=17121;TENOR=Os07t0170800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	3745385	3745385	.	+	.	Parent=Os07t0170800-01
Chr07	irgsp1_rep	CDS	3745386	3745610	.	+	0	Parent=Os07t0170800-01
Chr07	irgsp1_rep	CDS	3748134	3748238	.	+	0	Parent=Os07t0170800-01
Chr07	irgsp1_rep	CDS	3748588	3748644	.	+	0	Parent=Os07t0170800-01
Chr07	irgsp1_rep	CDS	3749382	3749711	.	+	0	Parent=Os07t0170800-01
Chr07	irgsp1_rep	three_prime_UTR	3749712	3749974	.	+	.	Parent=Os07t0170800-01
Chr07	irgsp1_rep	mRNA	3754392	3757854	.	+	.	ID=Os07t0170900-01;Name=Os07t0170900-01;Locus_id=Os07g0170900;Note=Conserved hypothetical protein.;Transcript_evidence=AK106442 (DDBJ%2C Best hit);ORF_evidence=A3BH03 (UniProt);NIAS_FLcDNA=002-103-D11;Expression=AK106442;TENOR=Os07t0170900-01;KEGG=Os07t0170900-01
Chr07	irgsp1_rep	five_prime_UTR	3754392	3754502	.	+	.	Parent=Os07t0170900-01
Chr07	irgsp1_rep	CDS	3754503	3755054	.	+	0	Parent=Os07t0170900-01
Chr07	irgsp1_rep	three_prime_UTR	3755055	3755936	.	+	.	Parent=Os07t0170900-01
Chr07	irgsp1_rep	three_prime_UTR	3756012	3756065	.	+	.	Parent=Os07t0170900-01
Chr07	irgsp1_rep	three_prime_UTR	3756153	3756251	.	+	.	Parent=Os07t0170900-01
Chr07	irgsp1_rep	three_prime_UTR	3757564	3757854	.	+	.	Parent=Os07t0170900-01
Chr07	irgsp1_rep	mRNA	3759965	3761966	.	+	.	ID=Os07t0171100-01;Name=Os07t0171100-01;Locus_id=Os07g0171100;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK066475 (DDBJ%2C Best hit);ORF_evidence=XP_002891836.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J013068C23;Expression=AK066475;TENOR=Os07t0171100-01;KEGG=Os07t0171100-01
Chr07	irgsp1_rep	five_prime_UTR	3759965	3760102	.	+	.	Parent=Os07t0171100-01
Chr07	irgsp1_rep	CDS	3760103	3760115	.	+	0	Parent=Os07t0171100-01
Chr07	irgsp1_rep	CDS	3760464	3760509	.	+	2	Parent=Os07t0171100-01
Chr07	irgsp1_rep	CDS	3760593	3760699	.	+	1	Parent=Os07t0171100-01
Chr07	irgsp1_rep	CDS	3760797	3760891	.	+	2	Parent=Os07t0171100-01
Chr07	irgsp1_rep	CDS	3761017	3761093	.	+	0	Parent=Os07t0171100-01
Chr07	irgsp1_rep	CDS	3761182	3761302	.	+	1	Parent=Os07t0171100-01
Chr07	irgsp1_rep	CDS	3761381	3761440	.	+	0	Parent=Os07t0171100-01
Chr07	irgsp1_rep	CDS	3761520	3761660	.	+	0	Parent=Os07t0171100-01
Chr07	irgsp1_rep	three_prime_UTR	3761661	3761966	.	+	.	Parent=Os07t0171100-01
Chr07	irgsp1_rep	mRNA	3760013	3761968	.	+	.	ID=Os07t0171100-02;Name=Os07t0171100-02;Locus_id=Os07g0171100;Note=Similar to predicted protein.;Transcript_evidence=AK062132 (DDBJ%2C Best hit);ORF_evidence=XP_002891836.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=PDZ/DHR/GLGF (IPR001478),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=001-045-E07;Expression=AK062132;TENOR=Os07t0171100-02;KEGG=Os07t0171100-02
Chr07	irgsp1_rep	five_prime_UTR	3760013	3760102	.	+	.	Parent=Os07t0171100-02
Chr07	irgsp1_rep	CDS	3760103	3760509	.	+	0	Parent=Os07t0171100-02
Chr07	irgsp1_rep	CDS	3760593	3760699	.	+	1	Parent=Os07t0171100-02
Chr07	irgsp1_rep	CDS	3760797	3760891	.	+	2	Parent=Os07t0171100-02
Chr07	irgsp1_rep	CDS	3761017	3761093	.	+	0	Parent=Os07t0171100-02
Chr07	irgsp1_rep	CDS	3761182	3761302	.	+	1	Parent=Os07t0171100-02
Chr07	irgsp1_rep	CDS	3761381	3761440	.	+	0	Parent=Os07t0171100-02
Chr07	irgsp1_rep	CDS	3761520	3761660	.	+	0	Parent=Os07t0171100-02
Chr07	irgsp1_rep	three_prime_UTR	3761661	3761968	.	+	.	Parent=Os07t0171100-02
Chr07	irgsp1_rep	mRNA	3762449	3766394	.	-	.	ID=Os07t0171200-01;Name=Os07t0171200-01;Locus_id=Os07g0171200;Oryzabase Gene Symbol Synonym(s)=GalT;Note=Similar to Galactose-1-phosphate uridyl transferase-like protein.;Transcript_evidence=AK071075 (DDBJ%2C Best hit);ORF_evidence=B6TFN9 (UniProt);GO=Biological Process: galactose metabolic process (GO:0006012),Molecular Function: catalytic activity (GO:0003824),Molecular Function: UDP-glucose:hexose-1-phosphate uridylyltransferase activity (GO:0008108),Molecular Function: zinc ion binding (GO:0008270);InterPro=Galactose-1-phosphate uridyl transferase%2C class I (IPR001937),Galactose-1-phosphate uridyl transferase%2C N-terminal (IPR005849),Histidine triad-like motif (IPR011146),Histidine triad motif (IPR011151);NIAS_FLcDNA=J023078I01;Oryzabase=13327;TENOR=Os07t0171200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	3766394	3766394	.	-	.	Parent=Os07t0171200-01
Chr07	irgsp1_rep	CDS	3766248	3766393	.	-	0	Parent=Os07t0171200-01
Chr07	irgsp1_rep	CDS	3765858	3766056	.	-	1	Parent=Os07t0171200-01
Chr07	irgsp1_rep	CDS	3763853	3764143	.	-	0	Parent=Os07t0171200-01
Chr07	irgsp1_rep	CDS	3762641	3762895	.	-	0	Parent=Os07t0171200-01
Chr07	irgsp1_rep	three_prime_UTR	3762449	3762640	.	-	.	Parent=Os07t0171200-01
Chr07	irgsp1_rep	mRNA	3773300	3779797	.	+	.	ID=Os07t0171300-01;Name=Os07t0171300-01;Locus_id=Os07g0171300;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK100663 (DDBJ%2C Best hit),AK066357 (DDBJ%2C Best hit);ORF_evidence=NP_001152463.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023112C11,J013062K19;TENOR=Os07t0171300-01
Chr07	irgsp1_rep	five_prime_UTR	3773300	3773558	.	+	.	Parent=Os07t0171300-01
Chr07	irgsp1_rep	five_prime_UTR	3774270	3774322	.	+	.	Parent=Os07t0171300-01
Chr07	irgsp1_rep	CDS	3774323	3774724	.	+	0	Parent=Os07t0171300-01
Chr07	irgsp1_rep	CDS	3775762	3775887	.	+	0	Parent=Os07t0171300-01
Chr07	irgsp1_rep	CDS	3775968	3776041	.	+	0	Parent=Os07t0171300-01
Chr07	irgsp1_rep	CDS	3776126	3776195	.	+	1	Parent=Os07t0171300-01
Chr07	irgsp1_rep	CDS	3776279	3776334	.	+	0	Parent=Os07t0171300-01
Chr07	irgsp1_rep	CDS	3776426	3776497	.	+	1	Parent=Os07t0171300-01
Chr07	irgsp1_rep	CDS	3776565	3776659	.	+	1	Parent=Os07t0171300-01
Chr07	irgsp1_rep	CDS	3776815	3776878	.	+	2	Parent=Os07t0171300-01
Chr07	irgsp1_rep	CDS	3776959	3777088	.	+	1	Parent=Os07t0171300-01
Chr07	irgsp1_rep	CDS	3777174	3777389	.	+	0	Parent=Os07t0171300-01
Chr07	irgsp1_rep	CDS	3777477	3777598	.	+	0	Parent=Os07t0171300-01
Chr07	irgsp1_rep	CDS	3778375	3778549	.	+	1	Parent=Os07t0171300-01
Chr07	irgsp1_rep	CDS	3778636	3778726	.	+	0	Parent=Os07t0171300-01
Chr07	irgsp1_rep	CDS	3778888	3779045	.	+	2	Parent=Os07t0171300-01
Chr07	irgsp1_rep	CDS	3779178	3779366	.	+	0	Parent=Os07t0171300-01
Chr07	irgsp1_rep	CDS	3779474	3779533	.	+	0	Parent=Os07t0171300-01
Chr07	irgsp1_rep	three_prime_UTR	3779534	3779797	.	+	.	Parent=Os07t0171300-01
Chr07	irgsp1_rep	mRNA	3775952	3778727	.	-	.	ID=Os07t0171350-00;Name=Os07t0171350-00;Locus_id=Os07g0171350;Note=Non-protein coding transcript.;Transcript_evidence=BT084747 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0171350-00
Chr07	irgsp1_rep	exon	3778616	3778727	.	-	.	Parent=Os07t0171350-00
Chr07	irgsp1_rep	exon	3778388	3778527	.	-	.	Parent=Os07t0171350-00
Chr07	irgsp1_rep	exon	3777459	3777615	.	-	.	Parent=Os07t0171350-00
Chr07	irgsp1_rep	exon	3777171	3777383	.	-	.	Parent=Os07t0171350-00
Chr07	irgsp1_rep	exon	3776965	3777085	.	-	.	Parent=Os07t0171350-00
Chr07	irgsp1_rep	exon	3776813	3776890	.	-	.	Parent=Os07t0171350-00
Chr07	irgsp1_rep	exon	3776568	3776664	.	-	.	Parent=Os07t0171350-00
Chr07	irgsp1_rep	exon	3776424	3776500	.	-	.	Parent=Os07t0171350-00
Chr07	irgsp1_rep	exon	3775952	3776161	.	-	.	Parent=Os07t0171350-00
Chr07	irgsp1_rep	mRNA	3797345	3800704	.	+	.	ID=Os07t0172200-01;Name=Os07t0172200-01;Locus_id=Os07g0172200;Note=Similar to ROOT HAIRLESS 1.;Transcript_evidence=AK103352 (DDBJ%2C Best hit);ORF_evidence=B6UAF0 (UniProt);NIAS_FLcDNA=J033126I17;Expression=AK103352;TENOR=Os07t0172200-01;KEGG=Os07t0172200-01
Chr07	irgsp1_rep	five_prime_UTR	3797345	3797365	.	+	.	Parent=Os07t0172200-01
Chr07	irgsp1_rep	CDS	3797366	3797674	.	+	0	Parent=Os07t0172200-01
Chr07	irgsp1_rep	CDS	3797766	3797876	.	+	0	Parent=Os07t0172200-01
Chr07	irgsp1_rep	CDS	3798021	3798107	.	+	0	Parent=Os07t0172200-01
Chr07	irgsp1_rep	CDS	3798207	3798439	.	+	0	Parent=Os07t0172200-01
Chr07	irgsp1_rep	CDS	3798656	3798734	.	+	1	Parent=Os07t0172200-01
Chr07	irgsp1_rep	CDS	3799021	3799164	.	+	0	Parent=Os07t0172200-01
Chr07	irgsp1_rep	CDS	3799377	3799416	.	+	0	Parent=Os07t0172200-01
Chr07	irgsp1_rep	CDS	3799515	3799615	.	+	2	Parent=Os07t0172200-01
Chr07	irgsp1_rep	three_prime_UTR	3799616	3800072	.	+	.	Parent=Os07t0172200-01
Chr07	irgsp1_rep	three_prime_UTR	3800168	3800209	.	+	.	Parent=Os07t0172200-01
Chr07	irgsp1_rep	three_prime_UTR	3800333	3800704	.	+	.	Parent=Os07t0172200-01
Chr07	irgsp1_rep	mRNA	3813983	3817318	.	-	.	ID=Os07t0172500-01;Name=Os07t0172500-01;Locus_id=Os07g0172500;Note=Similar to DNA-directed RNA polymerase II 13.6 kDa polypeptide (EC 2.7.7.6).;Transcript_evidence=AK068132 (DDBJ%2C Best hit),AK099622 (DDBJ%2C Best hit);ORF_evidence=B4FJS1 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899),Molecular Function: protein dimerization activity (GO:0046983);InterPro=DNA-directed RNA polymerase Rpb11%2C 13-16kDa subunit%2C conserved site (IPR008193),DNA-directed RNA polymerase%2C RBP11-like (IPR009025),DNA-directed RNA polymerase%2C dimerisation (IPR011261);NIAS_FLcDNA=J013131J17,J013053F13;Expression=AK068132;TENOR=Os07t0172500-01;KEGG=Os07t0172500-01 (EC:2.7.7.6)
Chr07	irgsp1_rep	five_prime_UTR	3817193	3817318	.	-	.	Parent=Os07t0172500-01
Chr07	irgsp1_rep	five_prime_UTR	3816939	3816991	.	-	.	Parent=Os07t0172500-01
Chr07	irgsp1_rep	CDS	3816886	3816938	.	-	0	Parent=Os07t0172500-01
Chr07	irgsp1_rep	CDS	3814992	3815081	.	-	1	Parent=Os07t0172500-01
Chr07	irgsp1_rep	CDS	3814828	3814906	.	-	1	Parent=Os07t0172500-01
Chr07	irgsp1_rep	CDS	3814652	3814747	.	-	0	Parent=Os07t0172500-01
Chr07	irgsp1_rep	CDS	3814253	3814297	.	-	0	Parent=Os07t0172500-01
Chr07	irgsp1_rep	three_prime_UTR	3813983	3814252	.	-	.	Parent=Os07t0172500-01
Chr07	irgsp1_rep	mRNA	3817978	3820720	.	-	.	ID=Os07t0172600-00;Name=Os07t0172600-00;Locus_id=Os07g0172600;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK369145 (DDBJ);ORF_evidence=NP_001058999.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os07t0172600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	3820719	3820720	.	-	.	Parent=Os07t0172600-00
Chr07	irgsp1_rep	CDS	3818100	3820718	.	-	0	Parent=Os07t0172600-00
Chr07	irgsp1_rep	three_prime_UTR	3817978	3818099	.	-	.	Parent=Os07t0172600-00
Chr07	irgsp1_rep	mRNA	3830318	3840267	.	+	.	ID=Os07t0172900-01;Name=Os07t0172900-01;Locus_id=Os07g0172900;Note=Similar to biopterin transport-related protein BT1.;Transcript_evidence=AK065471 (DDBJ%2C Best hit);ORF_evidence=NP_001151432.1 (RefSeq);InterPro=Biopterin transport-related protein BT1 (IPR004324),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J013006H14;TENOR=Os07t0172900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	3830318	3831346	.	+	.	Parent=Os07t0172900-01
Chr07	irgsp1_rep	five_prime_UTR	3832978	3832994	.	+	.	Parent=Os07t0172900-01
Chr07	irgsp1_rep	CDS	3832995	3833031	.	+	0	Parent=Os07t0172900-01
Chr07	irgsp1_rep	CDS	3836130	3836392	.	+	2	Parent=Os07t0172900-01
Chr07	irgsp1_rep	CDS	3836528	3836592	.	+	0	Parent=Os07t0172900-01
Chr07	irgsp1_rep	CDS	3836676	3836838	.	+	1	Parent=Os07t0172900-01
Chr07	irgsp1_rep	CDS	3837646	3837794	.	+	0	Parent=Os07t0172900-01
Chr07	irgsp1_rep	CDS	3837889	3838137	.	+	1	Parent=Os07t0172900-01
Chr07	irgsp1_rep	CDS	3838708	3838876	.	+	1	Parent=Os07t0172900-01
Chr07	irgsp1_rep	CDS	3838958	3839050	.	+	0	Parent=Os07t0172900-01
Chr07	irgsp1_rep	CDS	3839551	3839835	.	+	0	Parent=Os07t0172900-01
Chr07	irgsp1_rep	three_prime_UTR	3839836	3840267	.	+	.	Parent=Os07t0172900-01
Chr07	irgsp1_rep	mRNA	3830512	3833279	.	+	.	ID=Os07t0172900-02;Name=Os07t0172900-02;Locus_id=Os07g0172900;Note=Hypothetical conserved gene.;Transcript_evidence=AK067304 (DDBJ%2C Best hit);ORF_evidence=Q6ZA56 (UniProt);NIAS_FLcDNA=J013101M12;Expression=AK067304;TENOR=Os07t0172900-02;KEGG=Os07t0172900-02
Chr07	irgsp1_rep	five_prime_UTR	3830512	3830960	.	+	.	Parent=Os07t0172900-02
Chr07	irgsp1_rep	CDS	3830961	3831346	.	+	0	Parent=Os07t0172900-02
Chr07	irgsp1_rep	CDS	3832978	3833035	.	+	1	Parent=Os07t0172900-02
Chr07	irgsp1_rep	three_prime_UTR	3833036	3833279	.	+	.	Parent=Os07t0172900-02
Chr07	irgsp1_rep	mRNA	3843577	3844443	.	+	.	ID=Os07t0173100-00;Name=Os07t0173100-00;Locus_id=Os07g0173100;Note=HSP20-like chaperone domain containing protein.;Transcript_evidence=CT836094 (DDBJ%2C Best hit);ORF_evidence=NP_001059002.1 (RefSeq);TENOR=Os07t0173100-00;KEGG=Os07t0173100-00
Chr07	irgsp1_rep	five_prime_UTR	3843577	3843805	.	+	.	Parent=Os07t0173100-00
Chr07	irgsp1_rep	CDS	3843806	3844321	.	+	0	Parent=Os07t0173100-00
Chr07	irgsp1_rep	three_prime_UTR	3844322	3844443	.	+	.	Parent=Os07t0173100-00
Chr07	irgsp1_rep	mRNA	3847014	3850323	.	-	.	ID=Os07t0173200-02;Name=Os07t0173200-02;Locus_id=Os07g0173200;Note=Hypothetical conserved gene.;Transcript_evidence=AK065275 (DDBJ%2C Best hit),AK098856 (DDBJ%2C Best hit),AK098899 (DDBJ%2C Best hit);ORF_evidence=B8B7N5 (UniProt);NIAS_FLcDNA=J013002L11,J013000J22,J013002B06;TENOR=Os07t0173200-02
Chr07	irgsp1_rep	five_prime_UTR	3850232	3850323	.	-	.	Parent=Os07t0173200-02
Chr07	irgsp1_rep	CDS	3849367	3850231	.	-	0	Parent=Os07t0173200-02
Chr07	irgsp1_rep	CDS	3848161	3848339	.	-	2	Parent=Os07t0173200-02
Chr07	irgsp1_rep	CDS	3847398	3847958	.	-	0	Parent=Os07t0173200-02
Chr07	irgsp1_rep	three_prime_UTR	3847014	3847397	.	-	.	Parent=Os07t0173200-02
Chr07	irgsp1_rep	mRNA	3847014	3850319	.	-	.	ID=Os07t0173200-03;Name=Os07t0173200-03;Locus_id=Os07g0173200;Note=Frigida-like family protein.;Transcript_evidence=AK061624 (DDBJ%2C Best hit);ORF_evidence=Q6ZA59 (UniProt);InterPro=Frigida-like (IPR012474);NIAS_FLcDNA=001-034-C04;Expression=AK061624;TENOR=Os07t0173200-03;KEGG=Os07t0173200-03
Chr07	irgsp1_rep	five_prime_UTR	3850282	3850319	.	-	.	Parent=Os07t0173200-03
Chr07	irgsp1_rep	five_prime_UTR	3850232	3850249	.	-	.	Parent=Os07t0173200-03
Chr07	irgsp1_rep	CDS	3849367	3850231	.	-	0	Parent=Os07t0173200-03
Chr07	irgsp1_rep	CDS	3848161	3848339	.	-	2	Parent=Os07t0173200-03
Chr07	irgsp1_rep	CDS	3847766	3847958	.	-	0	Parent=Os07t0173200-03
Chr07	irgsp1_rep	CDS	3847532	3847656	.	-	2	Parent=Os07t0173200-03
Chr07	irgsp1_rep	three_prime_UTR	3847014	3847531	.	-	.	Parent=Os07t0173200-03
Chr07	irgsp1_rep	mRNA	3859755	3861542	.	+	.	ID=Os07t0173300-01;Name=Os07t0173300-01;Locus_id=Os07g0173300;Note=Conserved hypothetical protein.;Transcript_evidence=AK110935 (DDBJ%2C Best hit);ORF_evidence=A3BH18 (UniProt);NIAS_FLcDNA=002-173-G03;TENOR=Os07t0173300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	3859755	3859983	.	+	0	Parent=Os07t0173300-01
Chr07	irgsp1_rep	CDS	3860157	3860365	.	+	2	Parent=Os07t0173300-01
Chr07	irgsp1_rep	three_prime_UTR	3860366	3861542	.	+	.	Parent=Os07t0173300-01
Chr07	irgsp1_rep	mRNA	3864811	3868227	.	+	.	ID=Os07t0173400-01;Name=Os07t0173400-01;Locus_id=Os07g0173400;Note=Conserved hypothetical protein.;Transcript_evidence=AK107434 (DDBJ%2C Best hit);ORF_evidence=Q6ZA58 (UniProt);NIAS_FLcDNA=002-128-A10;Expression=AK107434;TENOR=Os07t0173400-01;KEGG=Os07t0173400-01
Chr07	irgsp1_rep	five_prime_UTR	3864811	3864812	.	+	.	Parent=Os07t0173400-01
Chr07	irgsp1_rep	CDS	3864813	3864914	.	+	0	Parent=Os07t0173400-01
Chr07	irgsp1_rep	CDS	3865756	3865963	.	+	0	Parent=Os07t0173400-01
Chr07	irgsp1_rep	CDS	3866072	3867270	.	+	2	Parent=Os07t0173400-01
Chr07	irgsp1_rep	three_prime_UTR	3867271	3867300	.	+	.	Parent=Os07t0173400-01
Chr07	irgsp1_rep	three_prime_UTR	3867876	3868227	.	+	.	Parent=Os07t0173400-01
Chr07	irgsp1_rep	mRNA	3872177	3875018	.	+	.	ID=Os07t0173501-00;Name=Os07t0173501-00;Locus_id=Os07g0173501;Note=Similar to 40S ribosomal protein S18.;Transcript_evidence=CT837772 (DDBJ%2C Best hit);ORF_evidence=NP_001151612.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S13 (IPR001892),Ribosomal protein S13-like%2C H2TH (IPR010979),Ribosomal protein S13%2C conserved site (IPR018269);TENOR=Os07t0173501-00;KEGG=Os07t0173501-00
Chr07	irgsp1_rep	five_prime_UTR	3872177	3872235	.	+	.	Parent=Os07t0173501-00
Chr07	irgsp1_rep	CDS	3872236	3872238	.	+	0	Parent=Os07t0173501-00
Chr07	irgsp1_rep	CDS	3872333	3872493	.	+	0	Parent=Os07t0173501-00
Chr07	irgsp1_rep	CDS	3873562	3873750	.	+	1	Parent=Os07t0173501-00
Chr07	irgsp1_rep	CDS	3874720	3874825	.	+	1	Parent=Os07t0173501-00
Chr07	irgsp1_rep	three_prime_UTR	3874826	3875018	.	+	.	Parent=Os07t0173501-00
Chr07	irgsp1_rep	mRNA	3880975	3881725	.	+	.	ID=Os07t0173601-00;Name=Os07t0173601-00;Locus_id=Os07g0173601;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8H589 (UniProt);TENOR=Os07t0173601-00;KEGG=Os07t0173601-00
Chr07	irgsp1_rep	CDS	3880975	3881073	.	+	0	Parent=Os07t0173601-00
Chr07	irgsp1_rep	CDS	3881273	3881725	.	+	0	Parent=Os07t0173601-00
Chr07	irgsp1_rep	mRNA	3883518	3885696	.	+	.	ID=Os07t0173700-00;Name=Os07t0173700-00;Locus_id=Os07g0173700;CGSNL Gene Symbol=RPS18A;CGSNL Gene Name=RIBOSOMAL PROTEIN S18A;Oryzabase Gene Symbol Synonym(s)=RPS18a%2C OsRPS18a;Oryzabase Gene Name Synonym(s)=ribosomal protein S18a%2C ribosomal protein small subunit 18a;Note=40S ribosomal protein S18.;Transcript_evidence=FP101812 (DDBJ);ORF_evidence=NP_001151612.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S13 (IPR001892),Ribosomal protein S13-like%2C H2TH (IPR010979),Ribosomal protein S13%2C conserved site (IPR018269);Oryzabase=22181;TENOR=Os07t0173700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	3883518	3883669	.	+	0	Parent=Os07t0173700-00
Chr07	irgsp1_rep	CDS	3884714	3884902	.	+	1	Parent=Os07t0173700-00
Chr07	irgsp1_rep	CDS	3885325	3885430	.	+	1	Parent=Os07t0173700-00
Chr07	irgsp1_rep	three_prime_UTR	3885431	3885440	.	+	.	Parent=Os07t0173700-00
Chr07	irgsp1_rep	three_prime_UTR	3885497	3885696	.	+	.	Parent=Os07t0173700-00
Chr07	irgsp1_rep	mRNA	3895074	3895682	.	-	.	ID=Os07t0173850-00;Name=Os07t0173850-00;Locus_id=Os07g0173850;Note=Hypothetical gene.;Transcript_evidence=CU406775 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os07t0173850-00;KEGG=Os07t0173850-00
Chr07	irgsp1_rep	five_prime_UTR	3895682	3895682	.	-	.	Parent=Os07t0173850-00
Chr07	irgsp1_rep	CDS	3895391	3895681	.	-	0	Parent=Os07t0173850-00
Chr07	irgsp1_rep	three_prime_UTR	3895074	3895390	.	-	.	Parent=Os07t0173850-00
Chr07	irgsp1_rep	mRNA	3898508	3900061	.	+	.	ID=Os07t0174200-00;Name=Os07t0174200-00;Locus_id=Os07g0174200;CGSNL Gene Symbol=RPS18B;CGSNL Gene Name=RIBOSOMAL PROTEIN S18B;Oryzabase Gene Symbol Synonym(s)=RPS18b;Oryzabase Gene Name Synonym(s)=ribosomal protein S18b;Note=Similar to 40S ribosomal protein S18.;Transcript_evidence=tplb0009n18 (Wheat FLcDNA);ORF_evidence=NP_001151612.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S13 (IPR001892),Ribosomal protein S13-like%2C H2TH (IPR010979),Ribosomal protein S13%2C conserved site (IPR018269);Oryzabase=22182;TENOR=Os07t0174200-00;KEGG=Os07t0174200-00
Chr07	irgsp1_rep	CDS	3898508	3898791	.	+	0	Parent=Os07t0174200-00
Chr07	irgsp1_rep	CDS	3899721	3899826	.	+	1	Parent=Os07t0174200-00
Chr07	irgsp1_rep	three_prime_UTR	3899827	3900061	.	+	.	Parent=Os07t0174200-00
Chr07	irgsp1_rep	mRNA	3910661	3911056	.	+	.	ID=Os07t0174400-00;Name=Os07t0174400-00;Locus_id=Os07g0174400;Oryzabase Gene Symbol Synonym(s)=OsLLA6%2C OsLTPG14%2C OsLTPg14%2C LLA6%2C LTPG14%2C LTPg14;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein-like AGP 6%2C non-specific lipid transfer protein-like arabinogalactan protein 6%2C GPI-anchored non-specific lipid transfer protein 14%2C type G nsLTP 14%2C type G non-specific lipid transfer protein 14;Note=Similar to Non-specific lipid-transfer protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2YIM6 (UniProt);GO=Biological Process: lipid transport (GO:0006869),Molecular Function: lipid binding (GO:0008289);InterPro=Plant lipid transfer protein/Par allergen (IPR000528),Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);Oryzabase=11333;TENOR=Os07t0174400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	3910661	3911056	.	+	0	Parent=Os07t0174400-00
Chr07	irgsp1_rep	mRNA	3919914	3920834	.	+	.	ID=Os07t0174700-00;Name=Os07t0174700-00;Locus_id=Os07g0174700;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001059008.2 (RefSeq);TENOR=Os07t0174700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	3919914	3920834	.	+	0	Parent=Os07t0174700-00
Chr07	irgsp1_rep	mRNA	3922851	3926312	.	-	.	ID=Os07t0174766-01;Name=Os07t0174766-01;Locus_id=Os07g0174766;Note=Hypothetical conserved gene.;Transcript_evidence=AK241687 (DDBJ%2C Best hit);ORF_evidence=B9F7S1 (UniProt);NIAS_FLcDNA=J065194H13;TENOR=Os07t0174766-01;KEGG=Os07t0174766-01
Chr07	irgsp1_rep	five_prime_UTR	3925978	3926312	.	-	.	Parent=Os07t0174766-01
Chr07	irgsp1_rep	CDS	3925898	3925977	.	-	0	Parent=Os07t0174766-01
Chr07	irgsp1_rep	CDS	3925583	3925651	.	-	1	Parent=Os07t0174766-01
Chr07	irgsp1_rep	CDS	3924978	3925008	.	-	1	Parent=Os07t0174766-01
Chr07	irgsp1_rep	three_prime_UTR	3924911	3924977	.	-	.	Parent=Os07t0174766-01
Chr07	irgsp1_rep	three_prime_UTR	3922851	3923368	.	-	.	Parent=Os07t0174766-01
Chr07	irgsp1_rep	mRNA	3947968	3949371	.	-	.	ID=Os07t0174900-00;Name=Os07t0174900-00;Locus_id=Os07g0174900;Oryzabase Gene Symbol Synonym(s)=OsLTPG16%2C OsLTPg16;Oryzabase Gene Name Synonym(s)=GPI-anchored non-specific lipid transfer protein 16%2C type G nsLTP 16%2C type G non-specific lipid transfer protein 16;Note=Plant lipid transfer protein and hydrophobic protein%2C helical domain containing protein.;Transcript_evidence=CT836047 (DDBJ%2C Best hit);ORF_evidence=A2YIM9 (UniProt);GO=Biological Process: lipid transport (GO:0006869),Molecular Function: lipid binding (GO:0008289);InterPro=Plant lipid transfer protein/Par allergen (IPR000528),Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);Oryzabase=13501;TENOR=Os07t0174900-00;KEGG=Os07t0174900-00
Chr07	irgsp1_rep	five_prime_UTR	3949269	3949371	.	-	.	Parent=Os07t0174900-00
Chr07	irgsp1_rep	CDS	3948941	3949268	.	-	0	Parent=Os07t0174900-00
Chr07	irgsp1_rep	CDS	3948145	3948332	.	-	2	Parent=Os07t0174900-00
Chr07	irgsp1_rep	three_prime_UTR	3947968	3948144	.	-	.	Parent=Os07t0174900-00
Chr07	irgsp1_rep	mRNA	3950662	3951180	.	+	.	ID=Os07t0175000-00;Name=Os07t0175000-00;Locus_id=Os07g0175000;Oryzabase Gene Symbol Synonym(s)=OsLTPG15%2C OsLTPg15;Oryzabase Gene Name Synonym(s)=GPI-anchored non-specific lipid transfer protein 15%2C type G nsLTP 15%2C type G non-specific lipid transfer protein 15;Note=Similar to lipid binding protein.;Transcript_evidence=EU972142 (DDBJ);ORF_evidence=A2YIN0 (UniProt);GO=Biological Process: lipid transport (GO:0006869),Molecular Function: lipid binding (GO:0008289);InterPro=Plant lipid transfer protein/Par allergen (IPR000528),Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);Oryzabase=13500;TENOR=Os07t0175000-00;KEGG=Os07t0175000-00
Chr07	irgsp1_rep	CDS	3950662	3951180	.	+	0	Parent=Os07t0175000-00
Chr07	irgsp1_rep	mRNA	3952983	3954879	.	-	.	ID=Os07t0175100-01;Name=Os07t0175100-01;Locus_id=Os07g0175100;Note=Homeodomain-like containing protein.;Transcript_evidence=AK064387 (DDBJ%2C Best hit),AK102660 (DDBJ%2C Best hit);ORF_evidence=Q8H572 (UniProt);GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Putative harbinger transposase-derived nuclease (IPR006912);NIAS_FLcDNA=002-108-E11,J033101I16;Expression=AK064387;TENOR=Os07t0175100-01;KEGG=Os07t0175100-01
Chr07	irgsp1_rep	CDS	3954600	3954879	.	-	0	Parent=Os07t0175100-01
Chr07	irgsp1_rep	CDS	3953471	3954501	.	-	2	Parent=Os07t0175100-01
Chr07	irgsp1_rep	three_prime_UTR	3952983	3953470	.	-	.	Parent=Os07t0175100-01
Chr07	irgsp1_rep	mRNA	3957209	3957722	.	+	.	ID=Os07t0175200-01;Name=Os07t0175200-01;Locus_id=Os07g0175200;Note=MTCP1 domain containing protein.;Transcript_evidence=AK058437 (DDBJ%2C Best hit);ORF_evidence=A2YIN2 (UniProt);InterPro=MTCP1 (IPR009069);NIAS_FLcDNA=001-015-F08;Expression=AK058437;TENOR=Os07t0175200-01;KEGG=Os07t0175200-01
Chr07	irgsp1_rep	five_prime_UTR	3957209	3957365	.	+	.	Parent=Os07t0175200-01
Chr07	irgsp1_rep	CDS	3957366	3957581	.	+	0	Parent=Os07t0175200-01
Chr07	irgsp1_rep	three_prime_UTR	3957582	3957722	.	+	.	Parent=Os07t0175200-01
Chr07	irgsp1_rep	mRNA	3957966	3960638	.	-	.	ID=Os07t0175300-01;Name=Os07t0175300-01;Locus_id=Os07g0175300;Note=Conserved hypothetical protein.;Transcript_evidence=AK065521 (DDBJ%2C Best hit);ORF_evidence=A2YIN3 (UniProt);NIAS_FLcDNA=J013030G02;Expression=AK065521;TENOR=Os07t0175300-01;KEGG=Os07t0175300-01
Chr07	irgsp1_rep	five_prime_UTR	3960146	3960638	.	-	.	Parent=Os07t0175300-01
Chr07	irgsp1_rep	CDS	3959528	3960145	.	-	0	Parent=Os07t0175300-01
Chr07	irgsp1_rep	three_prime_UTR	3957966	3959527	.	-	.	Parent=Os07t0175300-01
Chr07	irgsp1_rep	mRNA	3970345	3975458	.	-	.	ID=Os07t0175350-00;Name=Os07t0175350-00;Locus_id=Os07g0175350;Note=Hypothetical protein.;Transcript_evidence=tplb0022c02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0175350-00
Chr07	irgsp1_rep	five_prime_UTR	3975134	3975458	.	-	.	Parent=Os07t0175350-00
Chr07	irgsp1_rep	CDS	3974567	3975133	.	-	0	Parent=Os07t0175350-00
Chr07	irgsp1_rep	CDS	3974367	3974442	.	-	0	Parent=Os07t0175350-00
Chr07	irgsp1_rep	CDS	3974245	3974246	.	-	2	Parent=Os07t0175350-00
Chr07	irgsp1_rep	three_prime_UTR	3974055	3974244	.	-	.	Parent=Os07t0175350-00
Chr07	irgsp1_rep	three_prime_UTR	3973719	3973948	.	-	.	Parent=Os07t0175350-00
Chr07	irgsp1_rep	three_prime_UTR	3973397	3973505	.	-	.	Parent=Os07t0175350-00
Chr07	irgsp1_rep	three_prime_UTR	3973050	3973293	.	-	.	Parent=Os07t0175350-00
Chr07	irgsp1_rep	three_prime_UTR	3972320	3972683	.	-	.	Parent=Os07t0175350-00
Chr07	irgsp1_rep	three_prime_UTR	3970345	3970972	.	-	.	Parent=Os07t0175350-00
Chr07	irgsp1_rep	mRNA	3970364	3975298	.	+	.	ID=Os07t0175400-00;Name=Os07t0175400-00;Locus_id=Os07g0175400;Oryzabase Gene Symbol Synonym(s)=OsSTA191;Note=Hypothetical conserved gene.;Transcript_evidence=AK331548 (DDBJ);ORF_evidence=NP_001175074.1 (RefSeq);GO=Biological Process: ion transport (GO:0006811),Biological Process: potassium ion transport (GO:0006813),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: ion channel activity (GO:0005216),Molecular Function: voltage-gated potassium channel activity (GO:0005249);InterPro=Cyclic nucleotide-binding domain (IPR000595),Potassium channel%2C voltage-dependent%2C EAG/ELK/ERG (IPR003938),Ion transport (IPR005821),RmlC-like jelly roll fold (IPR014710),Cyclic nucleotide-binding-like (IPR018490);Oryzabase=19471;TENOR=Os07t0175400-00;KEGG=Os07t0175400-00
Chr07	irgsp1_rep	five_prime_UTR	3970364	3970389	.	+	.	Parent=Os07t0175400-00
Chr07	irgsp1_rep	CDS	3970390	3970967	.	+	0	Parent=Os07t0175400-00
Chr07	irgsp1_rep	CDS	3972195	3972252	.	+	1	Parent=Os07t0175400-00
Chr07	irgsp1_rep	CDS	3972366	3972683	.	+	0	Parent=Os07t0175400-00
Chr07	irgsp1_rep	CDS	3973049	3973294	.	+	0	Parent=Os07t0175400-00
Chr07	irgsp1_rep	CDS	3973398	3973518	.	+	0	Parent=Os07t0175400-00
Chr07	irgsp1_rep	CDS	3973760	3973945	.	+	2	Parent=Os07t0175400-00
Chr07	irgsp1_rep	CDS	3974612	3975240	.	+	2	Parent=Os07t0175400-00
Chr07	irgsp1_rep	three_prime_UTR	3975241	3975298	.	+	.	Parent=Os07t0175400-00
Chr07	irgsp1_rep	mRNA	3976534	3977701	.	+	.	ID=Os07t0175500-00;Name=Os07t0175500-00;Locus_id=Os07g0175500;Oryzabase Gene Symbol Synonym(s)=OsLTPG17%2C OsLTPg17;Oryzabase Gene Name Synonym(s)=GPI-anchored non-specific lipid transfer protein 17%2C type G nsLTP 17%2C type G non-specific lipid transfer protein 17;Note=Similar to lipid binding protein.;Transcript_evidence=CT836181 (DDBJ%2C Best hit);ORF_evidence=NP_001151017.1 (RefSeq);Oryzabase=13502;TENOR=Os07t0175500-00;KEGG=Os07t0175500-00
Chr07	irgsp1_rep	five_prime_UTR	3976534	3976535	.	+	.	Parent=Os07t0175500-00
Chr07	irgsp1_rep	CDS	3976536	3976656	.	+	0	Parent=Os07t0175500-00
Chr07	irgsp1_rep	CDS	3977057	3977122	.	+	2	Parent=Os07t0175500-00
Chr07	irgsp1_rep	CDS	3977257	3977432	.	+	2	Parent=Os07t0175500-00
Chr07	irgsp1_rep	three_prime_UTR	3977433	3977701	.	+	.	Parent=Os07t0175500-00
Chr07	irgsp1_rep	mRNA	3980211	3981196	.	+	.	ID=Os07t0175600-01;Name=Os07t0175600-01;Locus_id=Os07g0175600;Oryzabase Gene Symbol Synonym(s)=OsLTPG18%2C OsLTPg18;Oryzabase Gene Name Synonym(s)=GPI-anchored non-specific lipid transfer protein 18%2C type G nsLTP 18%2C type G non-specific lipid transfer protein 18;Note=Plant lipid transfer protein and hydrophobic protein%2C helical domain containing protein.;Transcript_evidence=AK104966 (DDBJ%2C Best hit),AK073569 (DDBJ%2C Best hit);ORF_evidence=A2YIN7 (UniProt);GO=Biological Process: lipid transport (GO:0006869),Molecular Function: lipid binding (GO:0008289);InterPro=Plant lipid transfer protein/Par allergen (IPR000528),Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=001-121-C08,J033042C03;Oryzabase=13503;TENOR=Os07t0175600-01
Chr07	irgsp1_rep	five_prime_UTR	3980211	3980304	.	+	.	Parent=Os07t0175600-01
Chr07	irgsp1_rep	CDS	3980305	3980644	.	+	0	Parent=Os07t0175600-01
Chr07	irgsp1_rep	CDS	3980745	3980917	.	+	2	Parent=Os07t0175600-01
Chr07	irgsp1_rep	three_prime_UTR	3980918	3981196	.	+	.	Parent=Os07t0175600-01
Chr07	irgsp1_rep	mRNA	3981420	3981858	.	-	.	ID=Os07t0175700-01;Name=Os07t0175700-01;Locus_id=Os07g0175700;Note=Non-protein coding transcript.;Transcript_evidence=AK062708 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-106-B11;TENOR=Os07t0175700-01
Chr07	irgsp1_rep	exon	3981420	3981858	.	-	.	Parent=Os07t0175700-01
Chr07	irgsp1_rep	mRNA	3982793	3986630	.	-	.	ID=Os07t0175750-00;Name=Os07t0175750-00;Locus_id=Os07g0175750;Note=Conserved hypothetical protein.;Transcript_evidence=EU973295 (DDBJ);ORF_evidence=NP_001173027.1 (RefSeq);TENOR=Os07t0175750-00
Chr07	irgsp1_rep	five_prime_UTR	3986541	3986630	.	-	.	Parent=Os07t0175750-00
Chr07	irgsp1_rep	CDS	3986397	3986540	.	-	0	Parent=Os07t0175750-00
Chr07	irgsp1_rep	three_prime_UTR	3986352	3986396	.	-	.	Parent=Os07t0175750-00
Chr07	irgsp1_rep	three_prime_UTR	3982793	3983150	.	-	.	Parent=Os07t0175750-00
Chr07	irgsp1_rep	mRNA	3989346	3989418	.	+	.	ID=Os07t0175801-00;Name=Os07t0175801-00;Locus_id=Os07g0175801;Note=Non-protein coding transcript.;Transcript_evidence=X02683 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0175801-00
Chr07	irgsp1_rep	exon	3989346	3989418	.	+	.	Parent=Os07t0175801-00
Chr07	irgsp1_rep	mRNA	3991680	3996800	.	-	.	ID=Os07t0175900-01;Name=Os07t0175900-01;Locus_id=Os07g0175900;Note=Similar to Inositol-1%2C 4%2C 5-trisphosphate 5-Phosphatase-like protein.;Transcript_evidence=AK067194 (DDBJ%2C Best hit);ORF_evidence=NP_001151627.1 (RefSeq);GO=Molecular Function: inositol or phosphatidylinositol phosphatase activity (GO:0004437);InterPro=Inositol polyphosphate-related phosphatase (IPR000300),Endonuclease/exonuclease/phosphatase (IPR005135);NIAS_FLcDNA=J013097N09;Expression=AK067194;TENOR=Os07t0175900-01;KEGG=Os07t0175900-01 (EC:3.1.3.36)
Chr07	irgsp1_rep	five_prime_UTR	3996185	3996800	.	-	.	Parent=Os07t0175900-01
Chr07	irgsp1_rep	CDS	3996155	3996184	.	-	0	Parent=Os07t0175900-01
Chr07	irgsp1_rep	CDS	3995886	3995976	.	-	0	Parent=Os07t0175900-01
Chr07	irgsp1_rep	CDS	3995173	3995259	.	-	2	Parent=Os07t0175900-01
Chr07	irgsp1_rep	CDS	3994871	3994961	.	-	2	Parent=Os07t0175900-01
Chr07	irgsp1_rep	CDS	3994557	3994661	.	-	1	Parent=Os07t0175900-01
Chr07	irgsp1_rep	CDS	3993971	3994471	.	-	1	Parent=Os07t0175900-01
Chr07	irgsp1_rep	CDS	3993687	3993822	.	-	1	Parent=Os07t0175900-01
Chr07	irgsp1_rep	CDS	3993380	3993573	.	-	0	Parent=Os07t0175900-01
Chr07	irgsp1_rep	CDS	3993180	3993288	.	-	1	Parent=Os07t0175900-01
Chr07	irgsp1_rep	CDS	3992860	3993008	.	-	0	Parent=Os07t0175900-01
Chr07	irgsp1_rep	CDS	3992533	3992752	.	-	1	Parent=Os07t0175900-01
Chr07	irgsp1_rep	three_prime_UTR	3992508	3992532	.	-	.	Parent=Os07t0175900-01
Chr07	irgsp1_rep	three_prime_UTR	3992334	3992398	.	-	.	Parent=Os07t0175900-01
Chr07	irgsp1_rep	three_prime_UTR	3992161	3992195	.	-	.	Parent=Os07t0175900-01
Chr07	irgsp1_rep	three_prime_UTR	3991680	3992071	.	-	.	Parent=Os07t0175900-01
Chr07	irgsp1_rep	mRNA	4020306	4027399	.	+	.	ID=Os07t0176200-01;Name=Os07t0176200-01;Locus_id=Os07g0176200;Note=Tesmin/TSO1-like%2C CXC domain containing protein.;Transcript_evidence=AK065897 (DDBJ%2C Best hit);ORF_evidence=B8B7N9 (UniProt);InterPro=Tesmin/TSO1-like%2C CXC (IPR005172);NIAS_FLcDNA=J013048O08;Expression=AK065897;TENOR=Os07t0176200-01;KEGG=Os07t0176200-01
Chr07	irgsp1_rep	five_prime_UTR	4020306	4020465	.	+	.	Parent=Os07t0176200-01
Chr07	irgsp1_rep	CDS	4020466	4020507	.	+	0	Parent=Os07t0176200-01
Chr07	irgsp1_rep	CDS	4023423	4023589	.	+	0	Parent=Os07t0176200-01
Chr07	irgsp1_rep	CDS	4023687	4024404	.	+	1	Parent=Os07t0176200-01
Chr07	irgsp1_rep	CDS	4024526	4024962	.	+	0	Parent=Os07t0176200-01
Chr07	irgsp1_rep	CDS	4025089	4025163	.	+	1	Parent=Os07t0176200-01
Chr07	irgsp1_rep	CDS	4025338	4025521	.	+	1	Parent=Os07t0176200-01
Chr07	irgsp1_rep	CDS	4025607	4025702	.	+	0	Parent=Os07t0176200-01
Chr07	irgsp1_rep	CDS	4025800	4025866	.	+	0	Parent=Os07t0176200-01
Chr07	irgsp1_rep	CDS	4026404	4026563	.	+	2	Parent=Os07t0176200-01
Chr07	irgsp1_rep	CDS	4026656	4027047	.	+	1	Parent=Os07t0176200-01
Chr07	irgsp1_rep	CDS	4027138	4027148	.	+	2	Parent=Os07t0176200-01
Chr07	irgsp1_rep	three_prime_UTR	4027149	4027399	.	+	.	Parent=Os07t0176200-01
Chr07	irgsp1_rep	mRNA	4024793	4027426	.	+	.	ID=Os07t0176200-02;Name=Os07t0176200-02;Locus_id=Os07g0176200;Note=Similar to Transcription factor CPP.;Transcript_evidence=AK062003 (DDBJ%2C Best hit);ORF_evidence=B3IX45 (UniProt);InterPro=Tesmin/TSO1-like%2C CXC (IPR005172);NIAS_FLcDNA=001-043-D07;Expression=AK062003;TENOR=Os07t0176200-02;KEGG=Os07t0176200-02
Chr07	irgsp1_rep	five_prime_UTR	4024793	4024825	.	+	.	Parent=Os07t0176200-02
Chr07	irgsp1_rep	CDS	4024826	4024962	.	+	0	Parent=Os07t0176200-02
Chr07	irgsp1_rep	CDS	4025089	4025163	.	+	1	Parent=Os07t0176200-02
Chr07	irgsp1_rep	CDS	4025338	4025521	.	+	1	Parent=Os07t0176200-02
Chr07	irgsp1_rep	CDS	4025607	4025702	.	+	0	Parent=Os07t0176200-02
Chr07	irgsp1_rep	CDS	4025800	4025866	.	+	0	Parent=Os07t0176200-02
Chr07	irgsp1_rep	CDS	4026404	4026563	.	+	2	Parent=Os07t0176200-02
Chr07	irgsp1_rep	CDS	4026656	4027047	.	+	1	Parent=Os07t0176200-02
Chr07	irgsp1_rep	CDS	4027138	4027148	.	+	2	Parent=Os07t0176200-02
Chr07	irgsp1_rep	three_prime_UTR	4027149	4027426	.	+	.	Parent=Os07t0176200-02
Chr07	irgsp1_rep	mRNA	4020600	4022499	.	+	.	ID=Os07t0176300-01;Name=Os07t0176300-01;Locus_id=Os07g0176300;Note=Conserved hypothetical protein.;Transcript_evidence=AK068207 (DDBJ%2C Best hit);ORF_evidence=A3A1W5 (UniProt);NIAS_FLcDNA=J013147L15;TENOR=Os07t0176300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	4020600	4021891	.	+	.	Parent=Os07t0176300-01
Chr07	irgsp1_rep	CDS	4021892	4022128	.	+	0	Parent=Os07t0176300-01
Chr07	irgsp1_rep	three_prime_UTR	4022129	4022499	.	+	.	Parent=Os07t0176300-01
Chr07	irgsp1_rep	mRNA	4029711	4030679	.	+	.	ID=Os07t0176400-00;Name=Os07t0176400-00;Locus_id=Os07g0176400;Note=Hypothetical protein.;Transcript_evidence=BT085651 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0176400-00;KEGG=Os07t0176400-00
Chr07	irgsp1_rep	five_prime_UTR	4029711	4029905	.	+	.	Parent=Os07t0176400-00
Chr07	irgsp1_rep	CDS	4029906	4030562	.	+	0	Parent=Os07t0176400-00
Chr07	irgsp1_rep	three_prime_UTR	4030563	4030679	.	+	.	Parent=Os07t0176400-00
Chr07	irgsp1_rep	mRNA	4023421	4027387	.	-	.	ID=Os07t0176401-00;Name=Os07t0176401-00;Locus_id=Os07g0176401;Note=Hypothetical protein.;Transcript_evidence=tplb0061g22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0176401-00
Chr07	irgsp1_rep	five_prime_UTR	4027135	4027387	.	-	.	Parent=Os07t0176401-00
Chr07	irgsp1_rep	five_prime_UTR	4026670	4027035	.	-	.	Parent=Os07t0176401-00
Chr07	irgsp1_rep	five_prime_UTR	4026340	4026578	.	-	.	Parent=Os07t0176401-00
Chr07	irgsp1_rep	five_prime_UTR	4025592	4025705	.	-	.	Parent=Os07t0176401-00
Chr07	irgsp1_rep	five_prime_UTR	4025388	4025501	.	-	.	Parent=Os07t0176401-00
Chr07	irgsp1_rep	CDS	4025342	4025387	.	-	0	Parent=Os07t0176401-00
Chr07	irgsp1_rep	CDS	4025073	4025170	.	-	2	Parent=Os07t0176401-00
Chr07	irgsp1_rep	CDS	4024848	4024949	.	-	0	Parent=Os07t0176401-00
Chr07	irgsp1_rep	three_prime_UTR	4024518	4024847	.	-	.	Parent=Os07t0176401-00
Chr07	irgsp1_rep	three_prime_UTR	4023684	4024397	.	-	.	Parent=Os07t0176401-00
Chr07	irgsp1_rep	three_prime_UTR	4023421	4023586	.	-	.	Parent=Os07t0176401-00
Chr07	irgsp1_rep	mRNA	4029361	4030853	.	-	.	ID=Os07t0176500-01;Name=Os07t0176500-01;Locus_id=Os07g0176500;Note=Leucine-rich repeat%2C plant specific containing protein.;Transcript_evidence=AK062887 (DDBJ%2C Best hit);ORF_evidence=A2YIP1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=001-108-D11;Expression=AK062887;TENOR=Os07t0176500-01;KEGG=Os07t0176500-01
Chr07	irgsp1_rep	five_prime_UTR	4030805	4030853	.	-	.	Parent=Os07t0176500-01
Chr07	irgsp1_rep	CDS	4029846	4030804	.	-	0	Parent=Os07t0176500-01
Chr07	irgsp1_rep	CDS	4029626	4029653	.	-	1	Parent=Os07t0176500-01
Chr07	irgsp1_rep	three_prime_UTR	4029361	4029625	.	-	.	Parent=Os07t0176500-01
Chr07	irgsp1_rep	mRNA	4049784	4054523	.	+	.	ID=Os07t0176600-01;Name=Os07t0176600-01;Locus_id=Os07g0176600;RAP-DB Gene Symbol Synonym(s)=OsNek3%2C OsSTA192;RAP-DB Gene Name Synonym(s)=NIMA-related kinase 3;Oryzabase Gene Symbol Synonym(s)=OsNek3%2C OsSTA192;Oryzabase Gene Name Synonym(s)=NIMA-related kinase 3;Note=Serine/threonine protein kinase%2C Never-in-mitosis A (NIMA)-related kinase%2C Pollen germination;Transcript_evidence=AK067073,AK066812;ORF_evidence=Q6ZEZ5;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine/threonine/dual specificity protein kinase%2C catalytic  domain (IPR002290),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J013093N14, J013086M12;Manual Curation=December 22%2C 2015;Literature_PMID=19224952;Oryzabase=9927;TENOR=Os07t0176600-01
Chr07	irgsp1_rep	five_prime_UTR	4049784	4049930	.	+	.	Parent=Os07t0176600-01
Chr07	irgsp1_rep	five_prime_UTR	4050488	4050519	.	+	.	Parent=Os07t0176600-01
Chr07	irgsp1_rep	CDS	4050520	4050605	.	+	0	Parent=Os07t0176600-01
Chr07	irgsp1_rep	CDS	4050719	4050785	.	+	1	Parent=Os07t0176600-01
Chr07	irgsp1_rep	CDS	4051272	4051337	.	+	0	Parent=Os07t0176600-01
Chr07	irgsp1_rep	CDS	4051476	4051522	.	+	0	Parent=Os07t0176600-01
Chr07	irgsp1_rep	CDS	4051605	4051650	.	+	1	Parent=Os07t0176600-01
Chr07	irgsp1_rep	CDS	4051753	4051833	.	+	0	Parent=Os07t0176600-01
Chr07	irgsp1_rep	CDS	4051953	4051995	.	+	0	Parent=Os07t0176600-01
Chr07	irgsp1_rep	CDS	4052106	4052155	.	+	2	Parent=Os07t0176600-01
Chr07	irgsp1_rep	CDS	4052240	4052321	.	+	0	Parent=Os07t0176600-01
Chr07	irgsp1_rep	CDS	4052386	4052435	.	+	2	Parent=Os07t0176600-01
Chr07	irgsp1_rep	CDS	4052535	4052608	.	+	0	Parent=Os07t0176600-01
Chr07	irgsp1_rep	CDS	4052718	4052769	.	+	1	Parent=Os07t0176600-01
Chr07	irgsp1_rep	CDS	4052882	4053307	.	+	0	Parent=Os07t0176600-01
Chr07	irgsp1_rep	CDS	4053664	4054251	.	+	0	Parent=Os07t0176600-01
Chr07	irgsp1_rep	three_prime_UTR	4054252	4054523	.	+	.	Parent=Os07t0176600-01
Chr07	irgsp1_rep	mRNA	4068004	4070134	.	-	.	ID=Os07t0176900-01;Name=Os07t0176900-01;Locus_id=Os07g0176900;Note=Similar to Ribose-5-phosphate isomerase precursor (EC 5.3.1.6).;Transcript_evidence=AK060861 (DDBJ%2C Best hit);ORF_evidence=Q8RU73 (UniProt);GO=Biological Process: pentose-phosphate shunt%2C non-oxidative branch (GO:0009052),Molecular Function: ribose-5-phosphate isomerase activity (GO:0004751);InterPro=Ribose 5-phosphate isomerase%2C type A (IPR004788),Ribose-5-phosphate isomerase%2C type A%2C subgroup (IPR020672);NIAS_FLcDNA=001-034-G01;Expression=AK060861;TENOR=Os07t0176900-01;KEGG=Os07t0176900-01 (EC:5.3.1.6)
Chr07	irgsp1_rep	five_prime_UTR	4070036	4070134	.	-	.	Parent=Os07t0176900-01
Chr07	irgsp1_rep	CDS	4069631	4070035	.	-	0	Parent=Os07t0176900-01
Chr07	irgsp1_rep	CDS	4068139	4068576	.	-	0	Parent=Os07t0176900-01
Chr07	irgsp1_rep	three_prime_UTR	4068004	4068138	.	-	.	Parent=Os07t0176900-01
Chr07	irgsp1_rep	mRNA	4068003	4070078	.	-	.	ID=Os07t0176900-02;Name=Os07t0176900-02;Locus_id=Os07g0176900;Note=Similar to ribose-5-phosphate isomerase.;Transcript_evidence=AK067117 (DDBJ%2C Best hit);ORF_evidence=Q8RU73 (UniProt);GO=Biological Process: pentose-phosphate shunt%2C non-oxidative branch (GO:0009052),Molecular Function: ribose-5-phosphate isomerase activity (GO:0004751);InterPro=Ribose 5-phosphate isomerase%2C type A (IPR004788),Ribose-5-phosphate isomerase%2C type A%2C subgroup (IPR020672);NIAS_FLcDNA=J013094G20;Expression=AK067117;TENOR=Os07t0176900-02;KEGG=Os07t0176900-02 (EC:5.3.1.6)
Chr07	irgsp1_rep	five_prime_UTR	4070077	4070078	.	-	.	Parent=Os07t0176900-02
Chr07	irgsp1_rep	CDS	4069970	4070076	.	-	0	Parent=Os07t0176900-02
Chr07	irgsp1_rep	CDS	4069631	4069901	.	-	1	Parent=Os07t0176900-02
Chr07	irgsp1_rep	CDS	4068139	4068576	.	-	0	Parent=Os07t0176900-02
Chr07	irgsp1_rep	three_prime_UTR	4068003	4068138	.	-	.	Parent=Os07t0176900-02
Chr07	irgsp1_rep	mRNA	4072468	4076141	.	+	.	ID=Os07t0176966-01;Name=Os07t0176966-01;Locus_id=Os07g0176966;Note=Hypothetical gene.;Transcript_evidence=AK289216 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100061P17;TENOR=Os07t0176966-01
Chr07	irgsp1_rep	five_prime_UTR	4072468	4073164	.	+	.	Parent=Os07t0176966-01
Chr07	irgsp1_rep	five_prime_UTR	4073938	4074007	.	+	.	Parent=Os07t0176966-01
Chr07	irgsp1_rep	five_prime_UTR	4074833	4075569	.	+	.	Parent=Os07t0176966-01
Chr07	irgsp1_rep	CDS	4075570	4076141	.	+	0	Parent=Os07t0176966-01
Chr07	irgsp1_rep	mRNA	4071947	4076070	.	-	.	ID=Os07t0177000-00;Name=Os07t0177000-00;Locus_id=Os07g0177000;Note=Protein of unknown function DUF295 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001175076.1 (RefSeq);InterPro=Protein of unknown function DUF295 (IPR005174);TENOR=Os07t0177000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	4075576	4076070	.	-	0	Parent=Os07t0177000-00
Chr07	irgsp1_rep	CDS	4075339	4075520	.	-	0	Parent=Os07t0177000-00
Chr07	irgsp1_rep	CDS	4074833	4075327	.	-	1	Parent=Os07t0177000-00
Chr07	irgsp1_rep	CDS	4073938	4074007	.	-	1	Parent=Os07t0177000-00
Chr07	irgsp1_rep	CDS	4071947	4072159	.	-	0	Parent=Os07t0177000-00
Chr07	irgsp1_rep	mRNA	4077504	4085522	.	+	.	ID=Os07t0177100-01;Name=Os07t0177100-01;Locus_id=Os07g0177100;Oryzabase Gene Symbol Synonym(s)=MMS19;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=AK070264 (DDBJ%2C Best hit);ORF_evidence=B9FVT4 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-type fold (IPR016024),Transcription protein MMS19%2C N-terminal (IPR024687);NIAS_FLcDNA=J023047J07;Oryzabase=21272;Expression=AK070264;TENOR=Os07t0177100-01;KEGG=Os07t0177100-01
Chr07	irgsp1_rep	five_prime_UTR	4077504	4077753	.	+	.	Parent=Os07t0177100-01
Chr07	irgsp1_rep	CDS	4077754	4077831	.	+	0	Parent=Os07t0177100-01
Chr07	irgsp1_rep	CDS	4078270	4078332	.	+	0	Parent=Os07t0177100-01
Chr07	irgsp1_rep	CDS	4078415	4078469	.	+	0	Parent=Os07t0177100-01
Chr07	irgsp1_rep	CDS	4078894	4078991	.	+	2	Parent=Os07t0177100-01
Chr07	irgsp1_rep	CDS	4080107	4080265	.	+	0	Parent=Os07t0177100-01
Chr07	irgsp1_rep	CDS	4080366	4080425	.	+	0	Parent=Os07t0177100-01
Chr07	irgsp1_rep	CDS	4081284	4081472	.	+	0	Parent=Os07t0177100-01
Chr07	irgsp1_rep	CDS	4081597	4081650	.	+	0	Parent=Os07t0177100-01
Chr07	irgsp1_rep	CDS	4081807	4081893	.	+	0	Parent=Os07t0177100-01
Chr07	irgsp1_rep	CDS	4081997	4082729	.	+	0	Parent=Os07t0177100-01
Chr07	irgsp1_rep	CDS	4083130	4083578	.	+	2	Parent=Os07t0177100-01
Chr07	irgsp1_rep	three_prime_UTR	4083579	4083660	.	+	.	Parent=Os07t0177100-01
Chr07	irgsp1_rep	three_prime_UTR	4083945	4084047	.	+	.	Parent=Os07t0177100-01
Chr07	irgsp1_rep	three_prime_UTR	4084190	4085052	.	+	.	Parent=Os07t0177100-01
Chr07	irgsp1_rep	three_prime_UTR	4085497	4085522	.	+	.	Parent=Os07t0177100-01
Chr07	irgsp1_rep	mRNA	4078946	4081893	.	+	.	ID=Os07t0177100-02;Name=Os07t0177100-02;Locus_id=Os07g0177100;Oryzabase Gene Symbol Synonym(s)=MMS19;Note=Conserved hypothetical protein.;Transcript_evidence=AK064551 (DDBJ%2C Best hit);ORF_evidence=B9FVT4 (UniProt);NIAS_FLcDNA=002-112-B12;Oryzabase=21272;TENOR=Os07t0177100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	4078946	4078946	.	+	.	Parent=Os07t0177100-02
Chr07	irgsp1_rep	CDS	4078947	4078991	.	+	0	Parent=Os07t0177100-02
Chr07	irgsp1_rep	CDS	4080107	4080265	.	+	0	Parent=Os07t0177100-02
Chr07	irgsp1_rep	CDS	4080366	4080437	.	+	0	Parent=Os07t0177100-02
Chr07	irgsp1_rep	three_prime_UTR	4080438	4081893	.	+	.	Parent=Os07t0177100-02
Chr07	irgsp1_rep	mRNA	4086746	4087286	.	+	.	ID=Os07t0177150-01;Name=Os07t0177150-01;Locus_id=Os07g0177150;Note=Non-protein coding transcript.;Transcript_evidence=AK288093 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J075187G21;TENOR=Os07t0177150-01
Chr07	irgsp1_rep	exon	4086746	4086818	.	+	.	Parent=Os07t0177150-01
Chr07	irgsp1_rep	exon	4086919	4087286	.	+	.	Parent=Os07t0177150-01
Chr07	irgsp1_rep	mRNA	4087454	4088971	.	-	.	ID=Os07t0177200-01;Name=Os07t0177200-01;Locus_id=Os07g0177200;Note=Similar to glutamate binding protein.;Transcript_evidence=AK070925 (DDBJ%2C Best hit);ORF_evidence=XP_002878509.1 (RefSeq);InterPro=Inhibitor of apoptosis-promoting Bax1-related (IPR006214);NIAS_FLcDNA=J023070O07;TENOR=Os07t0177200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	4088899	4088971	.	-	.	Parent=Os07t0177200-01
Chr07	irgsp1_rep	CDS	4088709	4088898	.	-	0	Parent=Os07t0177200-01
Chr07	irgsp1_rep	CDS	4088462	4088575	.	-	2	Parent=Os07t0177200-01
Chr07	irgsp1_rep	CDS	4088008	4088168	.	-	2	Parent=Os07t0177200-01
Chr07	irgsp1_rep	CDS	4087630	4087836	.	-	0	Parent=Os07t0177200-01
Chr07	irgsp1_rep	three_prime_UTR	4087454	4087629	.	-	.	Parent=Os07t0177200-01
Chr07	irgsp1_rep	mRNA	4089230	4092086	.	-	.	ID=Os07t0177300-01;Name=Os07t0177300-01;Locus_id=Os07g0177300;Note=Uncharacterised protein family UPF0005 domain containing protein.;Transcript_evidence=AK073781 (DDBJ%2C Best hit);ORF_evidence=B6T7B7 (UniProt);InterPro=Inhibitor of apoptosis-promoting Bax1-related (IPR006214);NIAS_FLcDNA=J033068H10;Expression=AK073781;TENOR=Os07t0177300-01;KEGG=Os07t0177300-01
Chr07	irgsp1_rep	five_prime_UTR	4091931	4092086	.	-	.	Parent=Os07t0177300-01
Chr07	irgsp1_rep	CDS	4091672	4091930	.	-	0	Parent=Os07t0177300-01
Chr07	irgsp1_rep	CDS	4091089	4091202	.	-	2	Parent=Os07t0177300-01
Chr07	irgsp1_rep	CDS	4089839	4089996	.	-	2	Parent=Os07t0177300-01
Chr07	irgsp1_rep	CDS	4089540	4089743	.	-	0	Parent=Os07t0177300-01
Chr07	irgsp1_rep	three_prime_UTR	4089230	4089539	.	-	.	Parent=Os07t0177300-01
Chr07	irgsp1_rep	mRNA	4118436	4123587	.	+	.	ID=Os07t0178100-01;Name=Os07t0178100-01;Locus_id=Os07g0178100;Oryzabase Gene Symbol Synonym(s)=OsETOL2;Oryzabase Gene Name Synonym(s)=ETHYLENE OVERPRODUCER 1-like gene 2;Note=Similar to ETO1-like protein 1 (Ethylene overproducer 1-like protein 1).;Transcript_evidence=AK099062 (DDBJ%2C Best hit),AK065742 (DDBJ%2C Best hit);ORF_evidence=B6SVJ8 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ fold (IPR011333),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J013153E21,J013042D06;Oryzabase=15664;Expression=AK099062;TENOR=Os07t0178100-01;KEGG=Os07t0178100-01
Chr07	irgsp1_rep	five_prime_UTR	4118436	4118901	.	+	.	Parent=Os07t0178100-01
Chr07	irgsp1_rep	CDS	4118902	4119026	.	+	0	Parent=Os07t0178100-01
Chr07	irgsp1_rep	CDS	4119154	4120866	.	+	1	Parent=Os07t0178100-01
Chr07	irgsp1_rep	CDS	4120969	4121260	.	+	1	Parent=Os07t0178100-01
Chr07	irgsp1_rep	CDS	4122175	4122484	.	+	0	Parent=Os07t0178100-01
Chr07	irgsp1_rep	CDS	4122889	4123109	.	+	2	Parent=Os07t0178100-01
Chr07	irgsp1_rep	three_prime_UTR	4123110	4123587	.	+	.	Parent=Os07t0178100-01
Chr07	irgsp1_rep	mRNA	4139160	4142436	.	+	.	ID=Os07t0178600-01;Name=Os07t0178600-01;Locus_id=Os07g0178600;CGSNL Gene Symbol=HSFA2B;CGSNL Gene Name=HEAT STRESS TRANSCRIPTION FACTOR A2B;Oryzabase Gene Symbol Synonym(s)=HSfA2b%2C OsHsfA2b%2C OsHsf-18%2C rHsf5%2C HS1%2C HSF18%2C OsHSF18%2C HSF5%2C OsHSF5;Oryzabase Gene Name Synonym(s)=Heat stress transcription factor A2b%2C Heat stress transcription factor A-2b%2C Heat stress transcription factor 18%2C Heat stress transcription factor 5;Note=Similar to Heat shock transcription factor 29 (Fragment).;Transcript_evidence=AK101824 (DDBJ%2C Best hit);ORF_evidence=A8Y7N1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Heat shock factor (HSF)-type%2C DNA-binding (IPR000232),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=J033067M16;Oryzabase=8549;Expression=AK101824;TENOR=Os07t0178600-01;KEGG=Os07t0178600-01
Chr07	irgsp1_rep	five_prime_UTR	4139160	4139659	.	+	.	Parent=Os07t0178600-01
Chr07	irgsp1_rep	CDS	4139660	4139992	.	+	0	Parent=Os07t0178600-01
Chr07	irgsp1_rep	CDS	4141316	4142101	.	+	0	Parent=Os07t0178600-01
Chr07	irgsp1_rep	three_prime_UTR	4142102	4142436	.	+	.	Parent=Os07t0178600-01
Chr07	irgsp1_rep	mRNA	4143416	4144441	.	+	.	ID=Os07t0178700-01;Name=Os07t0178700-01;Locus_id=Os07g0178700;Note=Similar to Low molecular mass early light-inducible protein HV90%2C chloroplast precursor (ELIP).;Transcript_evidence=AK288122 (DDBJ%2C Best hit);ORF_evidence=NP_001152927.1 (RefSeq);InterPro=Chlorophyll A-B binding protein (IPR022796),Chlorophyll a/b binding protein domain (IPR023329);NIAS_FLcDNA=J080071L03;TENOR=Os07t0178700-01;KEGG=Os07t0178700-01
Chr07	irgsp1_rep	five_prime_UTR	4143416	4143558	.	+	.	Parent=Os07t0178700-01
Chr07	irgsp1_rep	CDS	4143559	4143711	.	+	0	Parent=Os07t0178700-01
Chr07	irgsp1_rep	CDS	4143792	4144241	.	+	0	Parent=Os07t0178700-01
Chr07	irgsp1_rep	three_prime_UTR	4144242	4144441	.	+	.	Parent=Os07t0178700-01
Chr07	irgsp1_rep	mRNA	4145912	4146853	.	+	.	ID=Os07t0178800-01;Name=Os07t0178800-01;Locus_id=Os07g0178800;Note=Similar to Low molecular mass early light-inducible protein HV90%2C chloroplast precursor (ELIP).;Transcript_evidence=AK288088 (DDBJ%2C Best hit);ORF_evidence=NP_001152927.1 (RefSeq);InterPro=Chlorophyll A-B binding protein (IPR022796),Chlorophyll a/b binding protein domain (IPR023329);NIAS_FLcDNA=J075180H02;TENOR=Os07t0178800-01;KEGG=Os07t0178800-01
Chr07	irgsp1_rep	five_prime_UTR	4145912	4146008	.	+	.	Parent=Os07t0178800-01
Chr07	irgsp1_rep	CDS	4146009	4146143	.	+	0	Parent=Os07t0178800-01
Chr07	irgsp1_rep	CDS	4146239	4146682	.	+	0	Parent=Os07t0178800-01
Chr07	irgsp1_rep	three_prime_UTR	4146683	4146853	.	+	.	Parent=Os07t0178800-01
Chr07	irgsp1_rep	mRNA	4151000	4156036	.	-	.	ID=Os07t0178900-01;Name=Os07t0178900-01;Locus_id=Os07g0178900;Oryzabase Gene Symbol Synonym(s)=OsRuvBL1b%2C RuvBL1b%2C RUVBL1B;Oryzabase Gene Name Synonym(s)=RuvB-like protein 1b%2C RuvB-like 1b;Note=Similar to ATTIP49A/RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1)%3B protein binding.;Transcript_evidence=AK243443 (DDBJ%2C Best hit);ORF_evidence=NP_197625.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: DNA helicase activity (GO:0003678),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),TIP49%2C C-terminal (IPR010339),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=J100068H15;Oryzabase=22273;TENOR=Os07t0178900-01;KEGG=Os07t0178900-01
Chr07	irgsp1_rep	five_prime_UTR	4155868	4156036	.	-	.	Parent=Os07t0178900-01
Chr07	irgsp1_rep	CDS	4155787	4155867	.	-	0	Parent=Os07t0178900-01
Chr07	irgsp1_rep	CDS	4155452	4155640	.	-	0	Parent=Os07t0178900-01
Chr07	irgsp1_rep	CDS	4154274	4154405	.	-	0	Parent=Os07t0178900-01
Chr07	irgsp1_rep	CDS	4153961	4154110	.	-	0	Parent=Os07t0178900-01
Chr07	irgsp1_rep	CDS	4153501	4153656	.	-	0	Parent=Os07t0178900-01
Chr07	irgsp1_rep	CDS	4152727	4152861	.	-	0	Parent=Os07t0178900-01
Chr07	irgsp1_rep	CDS	4152551	4152616	.	-	0	Parent=Os07t0178900-01
Chr07	irgsp1_rep	CDS	4152220	4152326	.	-	0	Parent=Os07t0178900-01
Chr07	irgsp1_rep	CDS	4151989	4152088	.	-	1	Parent=Os07t0178900-01
Chr07	irgsp1_rep	CDS	4151820	4151911	.	-	0	Parent=Os07t0178900-01
Chr07	irgsp1_rep	CDS	4151531	4151600	.	-	1	Parent=Os07t0178900-01
Chr07	irgsp1_rep	CDS	4151289	4151378	.	-	0	Parent=Os07t0178900-01
Chr07	irgsp1_rep	three_prime_UTR	4151000	4151288	.	-	.	Parent=Os07t0178900-01
Chr07	irgsp1_rep	mRNA	4156181	4158543	.	-	.	ID=Os07t0178950-00;Name=Os07t0178950-00;Locus_id=Os07g0178950;Note=Hypothetical protein.;Transcript_evidence=tplb0047n14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0178950-00
Chr07	irgsp1_rep	five_prime_UTR	4157225	4158543	.	-	.	Parent=Os07t0178950-00
Chr07	irgsp1_rep	CDS	4156190	4157224	.	-	0	Parent=Os07t0178950-00
Chr07	irgsp1_rep	three_prime_UTR	4156181	4156189	.	-	.	Parent=Os07t0178950-00
Chr07	irgsp1_rep	mRNA	4156203	4159791	.	+	.	ID=Os07t0179000-01;Name=Os07t0179000-01;Locus_id=Os07g0179000;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK100008 (DDBJ%2C Best hit);ORF_evidence=A2YIR0 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J013136M08;Expression=AK100008;TENOR=Os07t0179000-01;KEGG=Os07t0179000-01
Chr07	irgsp1_rep	five_prime_UTR	4156203	4156234	.	+	.	Parent=Os07t0179000-01
Chr07	irgsp1_rep	CDS	4156235	4158418	.	+	0	Parent=Os07t0179000-01
Chr07	irgsp1_rep	three_prime_UTR	4158419	4159791	.	+	.	Parent=Os07t0179000-01
Chr07	irgsp1_rep	mRNA	4156226	4162216	.	+	.	ID=Os07t0179000-02;Name=Os07t0179000-02;Locus_id=Os07g0179000;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK119398 (DDBJ%2C Best hit);ORF_evidence=A2YIR0 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=001-132-D11;Expression=AK119398;TENOR=Os07t0179000-02;KEGG=Os07t0179000-02
Chr07	irgsp1_rep	five_prime_UTR	4156226	4156234	.	+	.	Parent=Os07t0179000-02
Chr07	irgsp1_rep	CDS	4156235	4158418	.	+	0	Parent=Os07t0179000-02
Chr07	irgsp1_rep	three_prime_UTR	4158419	4158447	.	+	.	Parent=Os07t0179000-02
Chr07	irgsp1_rep	three_prime_UTR	4159858	4159989	.	+	.	Parent=Os07t0179000-02
Chr07	irgsp1_rep	three_prime_UTR	4160085	4160213	.	+	.	Parent=Os07t0179000-02
Chr07	irgsp1_rep	three_prime_UTR	4161028	4161102	.	+	.	Parent=Os07t0179000-02
Chr07	irgsp1_rep	three_prime_UTR	4161952	4162216	.	+	.	Parent=Os07t0179000-02
Chr07	irgsp1_rep	mRNA	4156226	4158466	.	+	.	ID=Os07t0179000-03;Name=Os07t0179000-03;Locus_id=Os07g0179000;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK119505 (DDBJ%2C Best hit);ORF_evidence=A2YIR0 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=001-134-F04;Expression=AK119505;TENOR=Os07t0179000-03;KEGG=Os07t0179000-03
Chr07	irgsp1_rep	five_prime_UTR	4156226	4156234	.	+	.	Parent=Os07t0179000-03
Chr07	irgsp1_rep	CDS	4156235	4158418	.	+	0	Parent=Os07t0179000-03
Chr07	irgsp1_rep	three_prime_UTR	4158419	4158466	.	+	.	Parent=Os07t0179000-03
Chr07	irgsp1_rep	mRNA	4179287	4181396	.	+	.	ID=Os07t0179200-01;Name=Os07t0179200-01;Locus_id=Os07g0179200;CGSNL Gene Symbol=CYP63;CGSNL Gene Name=CYCLOPHILIN 63;Oryzabase Gene Symbol Synonym(s)=OsCYP63%2C OsCYP-18;Oryzabase Gene Name Synonym(s)=cyclophilin 63%2C cyclophilin 18;Note=Conserved hypothetical protein.;Transcript_evidence=AK059946 (DDBJ%2C Best hit);ORF_evidence=B9FVT7 (UniProt);NIAS_FLcDNA=006-210-G10;Oryzabase=10075;TENOR=Os07t0179200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	4179287	4179288	.	+	.	Parent=Os07t0179200-01
Chr07	irgsp1_rep	CDS	4179289	4179386	.	+	0	Parent=Os07t0179200-01
Chr07	irgsp1_rep	CDS	4179799	4180107	.	+	1	Parent=Os07t0179200-01
Chr07	irgsp1_rep	CDS	4180188	4180268	.	+	1	Parent=Os07t0179200-01
Chr07	irgsp1_rep	CDS	4180837	4181197	.	+	1	Parent=Os07t0179200-01
Chr07	irgsp1_rep	three_prime_UTR	4181198	4181396	.	+	.	Parent=Os07t0179200-01
Chr07	irgsp1_rep	mRNA	4182044	4184048	.	-	.	ID=Os07t0179300-00;Name=Os07t0179300-00;Locus_id=Os07g0179300;Oryzabase Gene Symbol Synonym(s)=OsVTE3;Oryzabase Gene Name Synonym(s)=VITAMIN E DEFICIENT 3;Note=Methyltransferase type 11 domain containing protein.;Transcript_evidence=DQ514526 (DDBJ%2C Best hit);ORF_evidence=B6TYV2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Methyltransferase type 11 (IPR013216);Oryzabase=18216;TENOR=Os07t0179300-00;KEGG=Os07t0179300-00
Chr07	irgsp1_rep	CDS	4183519	4184048	.	-	0	Parent=Os07t0179300-00
Chr07	irgsp1_rep	CDS	4182387	4182693	.	-	1	Parent=Os07t0179300-00
Chr07	irgsp1_rep	CDS	4182044	4182199	.	-	0	Parent=Os07t0179300-00
Chr07	irgsp1_rep	mRNA	4185365	4187968	.	-	.	ID=Os07t0179400-01;Name=Os07t0179400-01;Locus_id=Os07g0179400;Note=Dephospho-CoA kinase domain containing protein.;Transcript_evidence=AK073022 (DDBJ%2C Best hit);ORF_evidence=B6T8W5 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=Cytidylyltransferase (IPR004820),Cytidyltransferase-related (IPR004821),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J023149P22;Expression=AK073022;TENOR=Os07t0179400-01;KEGG=Os07t0179400-01
Chr07	irgsp1_rep	five_prime_UTR	4187668	4187968	.	-	.	Parent=Os07t0179400-01
Chr07	irgsp1_rep	CDS	4187524	4187667	.	-	0	Parent=Os07t0179400-01
Chr07	irgsp1_rep	CDS	4187324	4187395	.	-	0	Parent=Os07t0179400-01
Chr07	irgsp1_rep	CDS	4187168	4187227	.	-	0	Parent=Os07t0179400-01
Chr07	irgsp1_rep	CDS	4186400	4186494	.	-	0	Parent=Os07t0179400-01
Chr07	irgsp1_rep	CDS	4186093	4186162	.	-	1	Parent=Os07t0179400-01
Chr07	irgsp1_rep	CDS	4185866	4185988	.	-	0	Parent=Os07t0179400-01
Chr07	irgsp1_rep	three_prime_UTR	4185365	4185865	.	-	.	Parent=Os07t0179400-01
Chr07	irgsp1_rep	mRNA	4191047	4192262	.	-	.	ID=Os07t0179500-00;Name=Os07t0179500-00;Locus_id=Os07g0179500;Note=Hypothetical conserved gene.;Transcript_evidence=BT062498 (DDBJ);ORF_evidence=Q6ZLC3 (UniProt);InterPro=EMSY N-terminal (IPR005491);TENOR=Os07t0179500-00;KEGG=Os07t0179500-00
Chr07	irgsp1_rep	CDS	4191342	4192262	.	-	0	Parent=Os07t0179500-00
Chr07	irgsp1_rep	three_prime_UTR	4191047	4191341	.	-	.	Parent=Os07t0179500-00
Chr07	irgsp1_rep	mRNA	4199981	4200594	.	+	.	ID=Os07t0179700-00;Name=Os07t0179700-00;Locus_id=Os07g0179700;Note=Hypothetical conserved gene.;Transcript_evidence=DQ359159 (DDBJ%2C Best hit);ORF_evidence=NP_001175079.1 (RefSeq);InterPro=Glucoamylase%2C putatuve (IPR004314);TENOR=Os07t0179700-00
Chr07	irgsp1_rep	CDS	4199981	4200091	.	+	0	Parent=Os07t0179700-00
Chr07	irgsp1_rep	CDS	4200282	4200332	.	+	0	Parent=Os07t0179700-00
Chr07	irgsp1_rep	CDS	4200450	4200594	.	+	0	Parent=Os07t0179700-00
Chr07	irgsp1_rep	mRNA	4213482	4214137	.	+	.	ID=Os07t0180000-01;Name=Os07t0180000-01;Locus_id=Os07g0180000;Note=Hypothetical protein.;Transcript_evidence=AK119976 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-184-F01;TENOR=Os07t0180000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	4213482	4213811	.	+	.	Parent=Os07t0180000-01
Chr07	irgsp1_rep	CDS	4213812	4214030	.	+	0	Parent=Os07t0180000-01
Chr07	irgsp1_rep	three_prime_UTR	4214031	4214137	.	+	.	Parent=Os07t0180000-01
Chr07	irgsp1_rep	mRNA	4219935	4221821	.	+	.	ID=Os07t0180100-00;Name=Os07t0180100-00;Locus_id=Os07g0180100;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6ZLC8 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);TENOR=Os07t0180100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	4219935	4221821	.	+	0	Parent=Os07t0180100-00
Chr07	irgsp1_rep	mRNA	4226700	4230082	.	-	.	ID=Os07t0180300-01;Name=Os07t0180300-01;Locus_id=Os07g0180300;Note=Protein of unknown function DUF594 family protein.;Transcript_evidence=AK065026 (DDBJ%2C Best hit);ORF_evidence=A2YIR9 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);NIAS_FLcDNA=J013001G11;Expression=AK065026;TENOR=Os07t0180300-01;KEGG=Os07t0180300-01
Chr07	irgsp1_rep	five_prime_UTR	4229981	4230082	.	-	.	Parent=Os07t0180300-01
Chr07	irgsp1_rep	five_prime_UTR	4228997	4229016	.	-	.	Parent=Os07t0180300-01
Chr07	irgsp1_rep	CDS	4226993	4228996	.	-	0	Parent=Os07t0180300-01
Chr07	irgsp1_rep	three_prime_UTR	4226700	4226992	.	-	.	Parent=Os07t0180300-01
Chr07	irgsp1_rep	mRNA	4240044	4253407	.	+	.	ID=Os07t0180700-01;Name=Os07t0180700-01;Locus_id=Os07g0180700;CGSNL Gene Symbol=ZIFL3;CGSNL Gene Name=ZINC-INDUCED FACILITATOR-LIKE 3;Oryzabase Gene Symbol Synonym(s)=OsZIFL3;Oryzabase Gene Name Synonym(s)=zinc-induced facilitator-like 3;Note=Similar to Major facilitator superfamily antiporter.;Transcript_evidence=AK065334 (DDBJ%2C Best hit);ORF_evidence=B4FA49 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transmembrane transporter activity (GO:0022857);InterPro=General substrate transporter (IPR005828),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J013002H07;Oryzabase=9472;Expression=AK065334;TENOR=Os07t0180700-01;KEGG=Os07t0180700-01
Chr07	irgsp1_rep	five_prime_UTR	4240044	4240082	.	+	.	Parent=Os07t0180700-01
Chr07	irgsp1_rep	CDS	4240083	4240311	.	+	0	Parent=Os07t0180700-01
Chr07	irgsp1_rep	CDS	4241528	4241568	.	+	2	Parent=Os07t0180700-01
Chr07	irgsp1_rep	CDS	4248092	4248152	.	+	0	Parent=Os07t0180700-01
Chr07	irgsp1_rep	CDS	4248290	4248504	.	+	2	Parent=Os07t0180700-01
Chr07	irgsp1_rep	three_prime_UTR	4248505	4248578	.	+	.	Parent=Os07t0180700-01
Chr07	irgsp1_rep	three_prime_UTR	4248660	4248713	.	+	.	Parent=Os07t0180700-01
Chr07	irgsp1_rep	three_prime_UTR	4248808	4248865	.	+	.	Parent=Os07t0180700-01
Chr07	irgsp1_rep	three_prime_UTR	4248948	4248997	.	+	.	Parent=Os07t0180700-01
Chr07	irgsp1_rep	three_prime_UTR	4249103	4249178	.	+	.	Parent=Os07t0180700-01
Chr07	irgsp1_rep	three_prime_UTR	4249511	4249711	.	+	.	Parent=Os07t0180700-01
Chr07	irgsp1_rep	three_prime_UTR	4250262	4250349	.	+	.	Parent=Os07t0180700-01
Chr07	irgsp1_rep	three_prime_UTR	4250454	4250539	.	+	.	Parent=Os07t0180700-01
Chr07	irgsp1_rep	three_prime_UTR	4250621	4250728	.	+	.	Parent=Os07t0180700-01
Chr07	irgsp1_rep	three_prime_UTR	4251137	4251181	.	+	.	Parent=Os07t0180700-01
Chr07	irgsp1_rep	three_prime_UTR	4251269	4251357	.	+	.	Parent=Os07t0180700-01
Chr07	irgsp1_rep	three_prime_UTR	4251580	4253407	.	+	.	Parent=Os07t0180700-01
Chr07	irgsp1_rep	mRNA	4254293	4258677	.	-	.	ID=Os07t0180800-00;Name=Os07t0180800-00;Locus_id=Os07g0180800;Note=RNA recognition motif domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6ZLD1 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);TENOR=Os07t0180800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	4258453	4258677	.	-	0	Parent=Os07t0180800-00
Chr07	irgsp1_rep	CDS	4257796	4257885	.	-	0	Parent=Os07t0180800-00
Chr07	irgsp1_rep	CDS	4257467	4257700	.	-	0	Parent=Os07t0180800-00
Chr07	irgsp1_rep	CDS	4256377	4256598	.	-	0	Parent=Os07t0180800-00
Chr07	irgsp1_rep	CDS	4256194	4256299	.	-	0	Parent=Os07t0180800-00
Chr07	irgsp1_rep	CDS	4255134	4255198	.	-	2	Parent=Os07t0180800-00
Chr07	irgsp1_rep	CDS	4254985	4255061	.	-	0	Parent=Os07t0180800-00
Chr07	irgsp1_rep	CDS	4254805	4254884	.	-	1	Parent=Os07t0180800-00
Chr07	irgsp1_rep	CDS	4254675	4254715	.	-	2	Parent=Os07t0180800-00
Chr07	irgsp1_rep	CDS	4254442	4254508	.	-	0	Parent=Os07t0180800-00
Chr07	irgsp1_rep	CDS	4254293	4254321	.	-	2	Parent=Os07t0180800-00
Chr07	irgsp1_rep	mRNA	4263172	4265561	.	+	.	ID=Os07t0180900-01;Name=Os07t0180900-01;Locus_id=Os07g0180900;Note=Similar to 60S ribosomal protein L4.;Transcript_evidence=AK104504 (DDBJ%2C Best hit),AK060711 (DDBJ%2C Best hit),AK060963 (DDBJ%2C Best hit),AK104447 (DDBJ%2C Best hit),AK104629 (DDBJ%2C Best hit),AK288177 (DDBJ%2C Best hit);ORF_evidence=NP_001147047.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L4/L1e (IPR002136),Ribosomal protein L4/L1e%2C eukaryotic/archaeal%2C conserved site (IPR013000),Ribosomal protein L4 domain (IPR023574);NIAS_FLcDNA=006-302-F06,001-031-B02,006-202-A09,006-211-B12,006-310-C02,J090004M14;TENOR=Os07t0180900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	4263172	4263233	.	+	.	Parent=Os07t0180900-01
Chr07	irgsp1_rep	CDS	4263234	4264337	.	+	0	Parent=Os07t0180900-01
Chr07	irgsp1_rep	CDS	4265242	4265355	.	+	0	Parent=Os07t0180900-01
Chr07	irgsp1_rep	three_prime_UTR	4265356	4265561	.	+	.	Parent=Os07t0180900-01
Chr07	irgsp1_rep	mRNA	4266881	4271517	.	+	.	ID=Os07t0181000-01;Name=Os07t0181000-01;Locus_id=Os07g0181000;CGSNL Gene Symbol=PKPA1;CGSNL Gene Name=PYRUVATE KINASE P ALPHA 1;Oryzabase Gene Symbol Synonym(s)=OsPKpa1;Oryzabase Gene Name Synonym(s)=Pyruvate kinase palpha1%2C plastidic PK alpha 1;Note=Similar to Pyruvate kinase isozyme A%2C chloroplast precursor (EC 2.7.1.40).;Transcript_evidence=AK070512 (DDBJ%2C Best hit);ORF_evidence=B8B7Z2 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyruvate kinase activity (GO:0004743),Molecular Function: potassium ion binding (GO:0030955);InterPro=Pyruvate kinase (IPR001697),Pyruvate kinase-like%2C insert domain (IPR011037),Pyruvate kinase%2C barrel (IPR015793),Pyruvate kinase%2C alpha/beta (IPR015794),Pyruvate kinase%2C C-terminal (IPR015795),Pyruvate kinase%2C beta-barrel insert domain (IPR015806),Pyruvate/Phosphoenolpyruvate kinase (IPR015813),Pyruvate kinase%2C active site (IPR018209);NIAS_FLcDNA=J023055B17;Oryzabase=22596;Expression=AK070512;TENOR=Os07t0181000-01;KEGG=Os07t0181000-01 (EC:2.7.1.40)
Chr07	irgsp1_rep	five_prime_UTR	4266881	4266881	.	+	.	Parent=Os07t0181000-01
Chr07	irgsp1_rep	CDS	4266882	4267039	.	+	0	Parent=Os07t0181000-01
Chr07	irgsp1_rep	CDS	4267123	4267141	.	+	1	Parent=Os07t0181000-01
Chr07	irgsp1_rep	CDS	4267180	4267500	.	+	0	Parent=Os07t0181000-01
Chr07	irgsp1_rep	CDS	4268693	4268783	.	+	0	Parent=Os07t0181000-01
Chr07	irgsp1_rep	CDS	4268866	4269059	.	+	2	Parent=Os07t0181000-01
Chr07	irgsp1_rep	CDS	4269349	4269470	.	+	0	Parent=Os07t0181000-01
Chr07	irgsp1_rep	CDS	4270226	4270704	.	+	1	Parent=Os07t0181000-01
Chr07	irgsp1_rep	CDS	4270881	4271182	.	+	2	Parent=Os07t0181000-01
Chr07	irgsp1_rep	three_prime_UTR	4271183	4271517	.	+	.	Parent=Os07t0181000-01
Chr07	irgsp1_rep	mRNA	4266882	4271479	.	+	.	ID=Os07t0181000-02;Name=Os07t0181000-02;Locus_id=Os07g0181000;CGSNL Gene Symbol=PKPA1;CGSNL Gene Name=PYRUVATE KINASE P ALPHA 1;Oryzabase Gene Symbol Synonym(s)=OsPKpa1;Oryzabase Gene Name Synonym(s)=Pyruvate kinase palpha1%2C plastidic PK alpha 1;Note=Similar to Pyruvate kinase.;Transcript_evidence=AK066918 (DDBJ%2C Best hit);ORF_evidence=B8B7Z2 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyruvate kinase activity (GO:0004743),Molecular Function: potassium ion binding (GO:0030955);InterPro=Pyruvate kinase (IPR001697),Pyruvate kinase-like%2C insert domain (IPR011037),Pyruvate kinase%2C barrel (IPR015793),Pyruvate kinase%2C alpha/beta (IPR015794),Pyruvate kinase%2C C-terminal (IPR015795),Pyruvate kinase%2C beta-barrel insert domain (IPR015806),Pyruvate/Phosphoenolpyruvate kinase (IPR015813),Pyruvate kinase%2C active site (IPR018209);NIAS_FLcDNA=J013089N03;Oryzabase=22596;TENOR=Os07t0181000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	4266882	4266937	.	+	.	Parent=Os07t0181000-02
Chr07	irgsp1_rep	five_prime_UTR	4267418	4267431	.	+	.	Parent=Os07t0181000-02
Chr07	irgsp1_rep	CDS	4267432	4267500	.	+	0	Parent=Os07t0181000-02
Chr07	irgsp1_rep	CDS	4268693	4268783	.	+	0	Parent=Os07t0181000-02
Chr07	irgsp1_rep	CDS	4268866	4269059	.	+	2	Parent=Os07t0181000-02
Chr07	irgsp1_rep	CDS	4269349	4269470	.	+	0	Parent=Os07t0181000-02
Chr07	irgsp1_rep	CDS	4270226	4270704	.	+	1	Parent=Os07t0181000-02
Chr07	irgsp1_rep	CDS	4270881	4271182	.	+	2	Parent=Os07t0181000-02
Chr07	irgsp1_rep	three_prime_UTR	4271183	4271479	.	+	.	Parent=Os07t0181000-02
Chr07	irgsp1_rep	mRNA	4268929	4271471	.	+	.	ID=Os07t0181000-03;Name=Os07t0181000-03;Locus_id=Os07g0181000;CGSNL Gene Symbol=PKPA1;CGSNL Gene Name=PYRUVATE KINASE P ALPHA 1;Oryzabase Gene Symbol Synonym(s)=OsPKpa1;Oryzabase Gene Name Synonym(s)=Pyruvate kinase palpha1%2C plastidic PK alpha 1;Note=Similar to Pyruvate kinase.;Transcript_evidence=AK062119 (DDBJ%2C Best hit);ORF_evidence=B8B7Z2 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyruvate kinase activity (GO:0004743),Molecular Function: potassium ion binding (GO:0030955);InterPro=Pyruvate kinase (IPR001697),Pyruvate kinase%2C barrel (IPR015793),Pyruvate kinase%2C alpha/beta (IPR015794),Pyruvate kinase%2C C-terminal (IPR015795),Pyruvate/Phosphoenolpyruvate kinase (IPR015813),Pyruvate kinase%2C active site (IPR018209);NIAS_FLcDNA=001-045-C09;Oryzabase=22596;Expression=AK062119;TENOR=Os07t0181000-03;KEGG=Os07t0181000-03 (EC:2.7.1.40)
Chr07	irgsp1_rep	five_prime_UTR	4268929	4268930	.	+	.	Parent=Os07t0181000-03
Chr07	irgsp1_rep	CDS	4268931	4269059	.	+	0	Parent=Os07t0181000-03
Chr07	irgsp1_rep	CDS	4269349	4269470	.	+	0	Parent=Os07t0181000-03
Chr07	irgsp1_rep	CDS	4270226	4270704	.	+	1	Parent=Os07t0181000-03
Chr07	irgsp1_rep	CDS	4270881	4271182	.	+	2	Parent=Os07t0181000-03
Chr07	irgsp1_rep	three_prime_UTR	4271183	4271471	.	+	.	Parent=Os07t0181000-03
Chr07	irgsp1_rep	mRNA	4269378	4271413	.	+	.	ID=Os07t0181000-04;Name=Os07t0181000-04;Locus_id=Os07g0181000;CGSNL Gene Symbol=PKPA1;CGSNL Gene Name=PYRUVATE KINASE P ALPHA 1;Oryzabase Gene Symbol Synonym(s)=OsPKpa1;Oryzabase Gene Name Synonym(s)=Pyruvate kinase palpha1%2C plastidic PK alpha 1;Note=Similar to Pyruvate kinase.;Transcript_evidence=AK060932 (DDBJ%2C Best hit);ORF_evidence=B8B7Z2 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyruvate kinase activity (GO:0004743),Molecular Function: potassium ion binding (GO:0030955);InterPro=Pyruvate kinase (IPR001697),Pyruvate kinase%2C barrel (IPR015793),Pyruvate kinase%2C alpha/beta (IPR015794),Pyruvate kinase%2C C-terminal (IPR015795),Pyruvate/Phosphoenolpyruvate kinase (IPR015813),Pyruvate kinase%2C active site (IPR018209);NIAS_FLcDNA=006-201-B03;Oryzabase=22596;Expression=AK060932;TENOR=Os07t0181000-04;KEGG=Os07t0181000-04 (EC:2.7.1.40)
Chr07	irgsp1_rep	five_prime_UTR	4269378	4269378	.	+	.	Parent=Os07t0181000-04
Chr07	irgsp1_rep	CDS	4269379	4269470	.	+	0	Parent=Os07t0181000-04
Chr07	irgsp1_rep	CDS	4270226	4270704	.	+	1	Parent=Os07t0181000-04
Chr07	irgsp1_rep	CDS	4270881	4271182	.	+	2	Parent=Os07t0181000-04
Chr07	irgsp1_rep	three_prime_UTR	4271183	4271413	.	+	.	Parent=Os07t0181000-04
Chr07	irgsp1_rep	mRNA	4266882	4271518	.	+	.	ID=Os07t0181000-05;Name=Os07t0181000-05;Locus_id=Os07g0181000;RAP-DB Gene Symbol Synonym(s)=OsPKpa1%2C OsPKp&alpha%3B1%2C OsPK2;RAP-DB Gene Name Synonym(s)=Pyruvate kinase palpha1%2C Pyruvate kinase p&alpha%3B1;CGSNL Gene Symbol=PKPA1;CGSNL Gene Name=PYRUVATE KINASE P ALPHA 1;Oryzabase Gene Symbol Synonym(s)=OsPKpa1;Oryzabase Gene Name Synonym(s)=Pyruvate kinase palpha1%2C plastidic PK alpha 1;Note=Plastidic pyruvate kinase (EC 2.7.1.40)%2C Starch biosynthesis and amyloplast development in the rice endosperm;Transcript_evidence=Inferred from literature;ORF_evidence=A3BH68;GO=Biological Process: glycolytic process (GO:0006096),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyruvate kinase activity (GO:0004743),Molecular Function: potassium ion binding (GO:0030955);InterPro=Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily (IPR015813),Pyruvate kinase-like%2C insert domain superfamily (IPR011037),Pyruvate kinase%2C insert domain superfamily (IPR015806),Pyruvate kinase%2C C-terminal domain superfamily (IPR036918),Pyruvate kinase (IPR001697),Pyruvate kinase%2C barrel (IPR015793),Pyruvate kinase%2C C-terminal (IPR015795),Pyruvate kinase%2C active site (IPR018209);Manual Curation=October 20%2C 2018;Literature_PMID=29944211,29577566;Oryzabase=22596;Subcellular location=plastid (GO:0009536)
Chr07	irgsp1_rep	five_prime_UTR	4266882	4266951	.	+	.	Parent=Os07t0181000-05
Chr07	irgsp1_rep	CDS	4266952	4267500	.	+	0	Parent=Os07t0181000-05
Chr07	irgsp1_rep	CDS	4268693	4268783	.	+	0	Parent=Os07t0181000-05
Chr07	irgsp1_rep	CDS	4268866	4269059	.	+	2	Parent=Os07t0181000-05
Chr07	irgsp1_rep	CDS	4269349	4269470	.	+	0	Parent=Os07t0181000-05
Chr07	irgsp1_rep	CDS	4270226	4270704	.	+	1	Parent=Os07t0181000-05
Chr07	irgsp1_rep	CDS	4270881	4271182	.	+	2	Parent=Os07t0181000-05
Chr07	irgsp1_rep	three_prime_UTR	4271183	4271518	.	+	.	Parent=Os07t0181000-05
Chr07	irgsp1_rep	mRNA	4283646	4287282	.	+	.	ID=Os07t0181100-01;Name=Os07t0181100-01;Locus_id=Os07g0181100;Oryzabase Gene Symbol Synonym(s)=SLAC;Oryzabase Gene Name Synonym(s)=SLOW ANION CHANNEL;Note=C4-dicarboxylate transporter/malic acid transport protein family protein.;Transcript_evidence=AK109854 (DDBJ%2C Best hit);ORF_evidence=B6SWN8 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=C4-dicarboxylate transporter/malic acid transport protein (IPR004695);NIAS_FLcDNA=002-148-F12;Oryzabase=21762;Expression=AK109854;TENOR=Os07t0181100-01;KEGG=Os07t0181100-01
Chr07	irgsp1_rep	five_prime_UTR	4283646	4283749	.	+	.	Parent=Os07t0181100-01
Chr07	irgsp1_rep	five_prime_UTR	4284729	4284742	.	+	.	Parent=Os07t0181100-01
Chr07	irgsp1_rep	CDS	4284743	4284901	.	+	0	Parent=Os07t0181100-01
Chr07	irgsp1_rep	CDS	4285339	4285872	.	+	0	Parent=Os07t0181100-01
Chr07	irgsp1_rep	CDS	4285972	4287153	.	+	0	Parent=Os07t0181100-01
Chr07	irgsp1_rep	three_prime_UTR	4287154	4287282	.	+	.	Parent=Os07t0181100-01
Chr07	irgsp1_rep	mRNA	4288289	4288734	.	+	.	ID=Os07t0181200-00;Name=Os07t0181200-00;Locus_id=Os07g0181200;Note=Conserved hypothetical protein.;Transcript_evidence=BT085727 (DDBJ);ORF_evidence=Q6ZLB5 (UniProt);TENOR=Os07t0181200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	4288289	4288362	.	+	.	Parent=Os07t0181200-00
Chr07	irgsp1_rep	CDS	4288363	4288734	.	+	0	Parent=Os07t0181200-00
Chr07	irgsp1_rep	mRNA	4305620	4307513	.	+	.	ID=Os07t0181500-01;Name=Os07t0181500-01;Locus_id=Os07g0181500;Note=Protein of unknown function DUF506%2C plant family protein.;Transcript_evidence=AK072431 (DDBJ%2C Best hit);ORF_evidence=NP_001147475.1 (RefSeq);InterPro=Protein of unknown function DUF506%2C plant (IPR006502);NIAS_FLcDNA=J023093E18;Expression=AK072431;TENOR=Os07t0181500-01;KEGG=Os07t0181500-01
Chr07	irgsp1_rep	five_prime_UTR	4305620	4305826	.	+	.	Parent=Os07t0181500-01
Chr07	irgsp1_rep	CDS	4305827	4306225	.	+	0	Parent=Os07t0181500-01
Chr07	irgsp1_rep	CDS	4306303	4306545	.	+	0	Parent=Os07t0181500-01
Chr07	irgsp1_rep	three_prime_UTR	4306546	4307513	.	+	.	Parent=Os07t0181500-01
Chr07	irgsp1_rep	mRNA	4312794	4318815	.	+	.	ID=Os07t0181700-01;Name=Os07t0181700-01;Locus_id=Os07g0181700;Note=Guanylate-binding protein family protein.;Transcript_evidence=AK067956 (DDBJ%2C Best hit);ORF_evidence=NP_181418.2 (RefSeq);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Guanylate-binding protein%2C C-terminal (IPR003191),Guanylate-binding protein%2C N-terminal (IPR015894);NIAS_FLcDNA=J013127B03;Expression=AK067956;TENOR=Os07t0181700-01;KEGG=Os07t0181700-01
Chr07	irgsp1_rep	five_prime_UTR	4312794	4312981	.	+	.	Parent=Os07t0181700-01
Chr07	irgsp1_rep	CDS	4312982	4313085	.	+	0	Parent=Os07t0181700-01
Chr07	irgsp1_rep	CDS	4314013	4314115	.	+	1	Parent=Os07t0181700-01
Chr07	irgsp1_rep	CDS	4314245	4314314	.	+	0	Parent=Os07t0181700-01
Chr07	irgsp1_rep	CDS	4314400	4314438	.	+	2	Parent=Os07t0181700-01
Chr07	irgsp1_rep	CDS	4314532	4314649	.	+	2	Parent=Os07t0181700-01
Chr07	irgsp1_rep	CDS	4314742	4314799	.	+	1	Parent=Os07t0181700-01
Chr07	irgsp1_rep	CDS	4314879	4314943	.	+	0	Parent=Os07t0181700-01
Chr07	irgsp1_rep	CDS	4315046	4315052	.	+	1	Parent=Os07t0181700-01
Chr07	irgsp1_rep	CDS	4315129	4315189	.	+	0	Parent=Os07t0181700-01
Chr07	irgsp1_rep	CDS	4315568	4315627	.	+	2	Parent=Os07t0181700-01
Chr07	irgsp1_rep	CDS	4315746	4315765	.	+	2	Parent=Os07t0181700-01
Chr07	irgsp1_rep	CDS	4315853	4315918	.	+	0	Parent=Os07t0181700-01
Chr07	irgsp1_rep	CDS	4316124	4316291	.	+	0	Parent=Os07t0181700-01
Chr07	irgsp1_rep	CDS	4316388	4316645	.	+	0	Parent=Os07t0181700-01
Chr07	irgsp1_rep	CDS	4317137	4317349	.	+	0	Parent=Os07t0181700-01
Chr07	irgsp1_rep	CDS	4317951	4318219	.	+	0	Parent=Os07t0181700-01
Chr07	irgsp1_rep	CDS	4318306	4318450	.	+	1	Parent=Os07t0181700-01
Chr07	irgsp1_rep	three_prime_UTR	4318451	4318815	.	+	.	Parent=Os07t0181700-01
Chr07	irgsp1_rep	mRNA	4312921	4318452	.	-	.	ID=Os07t0181750-00;Name=Os07t0181750-00;Locus_id=Os07g0181750;Note=Hypothetical protein.;Transcript_evidence=tplb0055e12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0181750-00
Chr07	irgsp1_rep	five_prime_UTR	4318291	4318452	.	-	.	Parent=Os07t0181750-00
Chr07	irgsp1_rep	five_prime_UTR	4318100	4318208	.	-	.	Parent=Os07t0181750-00
Chr07	irgsp1_rep	CDS	4317930	4318099	.	-	0	Parent=Os07t0181750-00
Chr07	irgsp1_rep	CDS	4317261	4317327	.	-	1	Parent=Os07t0181750-00
Chr07	irgsp1_rep	three_prime_UTR	4317149	4317260	.	-	.	Parent=Os07t0181750-00
Chr07	irgsp1_rep	three_prime_UTR	4316377	4316651	.	-	.	Parent=Os07t0181750-00
Chr07	irgsp1_rep	three_prime_UTR	4316113	4316277	.	-	.	Parent=Os07t0181750-00
Chr07	irgsp1_rep	three_prime_UTR	4315814	4315908	.	-	.	Parent=Os07t0181750-00
Chr07	irgsp1_rep	three_prime_UTR	4315555	4315615	.	-	.	Parent=Os07t0181750-00
Chr07	irgsp1_rep	three_prime_UTR	4315112	4315185	.	-	.	Parent=Os07t0181750-00
Chr07	irgsp1_rep	three_prime_UTR	4314822	4314934	.	-	.	Parent=Os07t0181750-00
Chr07	irgsp1_rep	three_prime_UTR	4314511	4314657	.	-	.	Parent=Os07t0181750-00
Chr07	irgsp1_rep	three_prime_UTR	4314234	4314331	.	-	.	Parent=Os07t0181750-00
Chr07	irgsp1_rep	three_prime_UTR	4313997	4314104	.	-	.	Parent=Os07t0181750-00
Chr07	irgsp1_rep	three_prime_UTR	4312921	4313074	.	-	.	Parent=Os07t0181750-00
Chr07	irgsp1_rep	mRNA	4318811	4320328	.	-	.	ID=Os07t0181800-01;Name=Os07t0181800-01;Locus_id=Os07g0181800;Note=Protein of unknown function DUF2346 domain containing protein.;Transcript_evidence=AK121080 (DDBJ%2C Best hit);ORF_evidence=XP_002459435.1 (RefSeq);InterPro=Protein of unknown function DUF2346 (IPR018625);NIAS_FLcDNA=J023063D04;Expression=AK121080;TENOR=Os07t0181800-01;KEGG=Os07t0181800-01
Chr07	irgsp1_rep	five_prime_UTR	4320169	4320328	.	-	.	Parent=Os07t0181800-01
Chr07	irgsp1_rep	CDS	4320040	4320168	.	-	0	Parent=Os07t0181800-01
Chr07	irgsp1_rep	CDS	4319080	4319184	.	-	0	Parent=Os07t0181800-01
Chr07	irgsp1_rep	three_prime_UTR	4318811	4319079	.	-	.	Parent=Os07t0181800-01
Chr07	irgsp1_rep	mRNA	4322232	4326713	.	-	.	ID=Os07t0182000-01;Name=Os07t0182000-01;Locus_id=Os07g0182000;RAP-DB Gene Symbol Synonym(s)=RISBZ1%2C OsbZIP58%2C OsEnS-92;RAP-DB Gene Name Synonym(s)=BZIP ACTIVATOR 1%2C bZIP transcription factor 58%2C rice seed b-Zipper 1%2C endosperm-specific gene 92;CGSNL Gene Symbol=RISBZ1;CGSNL Gene Name=BZIP ACTIVATOR 1;Oryzabase Gene Symbol Synonym(s)=OsbZIP58%2C OsEnS-92%2C OsSMF1%2C SMF1%2C OsRISBZ1;Oryzabase Gene Name Synonym(s)=bZIP transcription factor 58%2C rice seed b-Zipper 1%2C endosperm-specific gene 92%2C seed maturation factor 1;Note=Basic leucine zipper transcriptional activator%2C Grain filling;Transcript_evidence=AB053472 (Genbank);ORF_evidence=Q9AR01 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616),Basic leucine-zipper%2C C-terminal (IPR020983);NIAS_FLcDNA=J075099M14;Manual Curation=September 28%2C 2009;Literature_PMID=11133985,19473328;Oryzabase=7467;Expression=AB053472;TENOR=Os07t0182000-01;KEGG=Os07t0182000-01
Chr07	irgsp1_rep	five_prime_UTR	4326471	4326713	.	-	.	Parent=Os07t0182000-01
Chr07	irgsp1_rep	CDS	4326048	4326470	.	-	0	Parent=Os07t0182000-01
Chr07	irgsp1_rep	CDS	4324661	4324754	.	-	0	Parent=Os07t0182000-01
Chr07	irgsp1_rep	CDS	4324292	4324499	.	-	2	Parent=Os07t0182000-01
Chr07	irgsp1_rep	CDS	4323600	4323675	.	-	1	Parent=Os07t0182000-01
Chr07	irgsp1_rep	CDS	4323385	4323510	.	-	0	Parent=Os07t0182000-01
Chr07	irgsp1_rep	CDS	4322461	4322844	.	-	0	Parent=Os07t0182000-01
Chr07	irgsp1_rep	three_prime_UTR	4322232	4322460	.	-	.	Parent=Os07t0182000-01
Chr07	irgsp1_rep	mRNA	4330503	4333642	.	-	.	ID=Os07t0182100-01;Name=Os07t0182100-01;Locus_id=Os07g0182100;Oryzabase Gene Symbol Synonym(s)=OsTSA%2C pOsTSA%2C TSbeta;Oryzabase Gene Name Synonym(s)=putative OsTSA%2C alpha-subunit of tryptophan synthase%2C tryptophan synthase alpha chain;Note=Similar to Tryptophan synthase alpha chain.;Transcript_evidence=AK104002 (DDBJ%2C Best hit),AK066734 (DDBJ%2C Best hit);ORF_evidence=NP_001123592.1 (RefSeq);GO=Biological Process: tryptophan metabolic process (GO:0006568),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: tryptophan synthase activity (GO:0004834);InterPro=Tryptophan synthase%2C alpha chain (IPR002028),Ribulose-phosphate binding barrel (IPR011060),Aldolase-type TIM barrel (IPR013785),Tryptophan synthase%2C alpha chain%2C active site (IPR018204);NIAS_FLcDNA=001-019-G11,J013078I01;Oryzabase=10017;TENOR=Os07t0182100-01
Chr07	irgsp1_rep	five_prime_UTR	4333565	4333642	.	-	.	Parent=Os07t0182100-01
Chr07	irgsp1_rep	CDS	4333325	4333564	.	-	0	Parent=Os07t0182100-01
Chr07	irgsp1_rep	CDS	4332546	4332692	.	-	0	Parent=Os07t0182100-01
Chr07	irgsp1_rep	CDS	4332264	4332438	.	-	0	Parent=Os07t0182100-01
Chr07	irgsp1_rep	CDS	4331798	4331874	.	-	2	Parent=Os07t0182100-01
Chr07	irgsp1_rep	CDS	4331400	4331477	.	-	0	Parent=Os07t0182100-01
Chr07	irgsp1_rep	CDS	4331076	4331153	.	-	0	Parent=Os07t0182100-01
Chr07	irgsp1_rep	CDS	4330920	4330979	.	-	0	Parent=Os07t0182100-01
Chr07	irgsp1_rep	CDS	4330691	4330825	.	-	0	Parent=Os07t0182100-01
Chr07	irgsp1_rep	three_prime_UTR	4330503	4330690	.	-	.	Parent=Os07t0182100-01
Chr07	irgsp1_rep	mRNA	4339902	4342192	.	+	.	ID=Os07t0182200-01;Name=Os07t0182200-01;Locus_id=Os07g0182200;Oryzabase Gene Symbol Synonym(s)=OsbHLH099;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 099;Note=Similar to PhytoChrome-interacting factor 3 (PhytoChrome-associated protein 3) (Basic helix-loop-helix protein 8) (bHLH8) (AtbHLH008).;Transcript_evidence=AK066623 (DDBJ%2C Best hit);ORF_evidence=B6U846 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J013073L03;Oryzabase=15384;Expression=AK066623;TENOR=Os07t0182200-01;KEGG=Os07t0182200-01
Chr07	irgsp1_rep	CDS	4339902	4339940	.	+	0	Parent=Os07t0182200-01
Chr07	irgsp1_rep	CDS	4340306	4340371	.	+	0	Parent=Os07t0182200-01
Chr07	irgsp1_rep	CDS	4340481	4340555	.	+	0	Parent=Os07t0182200-01
Chr07	irgsp1_rep	CDS	4341271	4341501	.	+	0	Parent=Os07t0182200-01
Chr07	irgsp1_rep	three_prime_UTR	4341502	4342192	.	+	.	Parent=Os07t0182200-01
Chr07	irgsp1_rep	mRNA	4355211	4356572	.	-	.	ID=Os07t0182400-01;Name=Os07t0182400-01;Locus_id=Os07g0182400;CGSNL Gene Symbol=IAA24;Oryzabase Gene Symbol Synonym(s)=OsIAA24;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 24%2C auxin response element-binding transcriptional factor 24;Note=AUX/IAA protein family protein.;Transcript_evidence=AK103483 (DDBJ%2C Best hit);ORF_evidence=Q6ZL57 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Aux/IAA-ARF-dimerisation (IPR011525);NIAS_FLcDNA=J033130J12;Oryzabase=10911;Expression=AK103483;TENOR=Os07t0182400-01;KEGG=Os07t0182400-01
Chr07	irgsp1_rep	five_prime_UTR	4356487	4356572	.	-	.	Parent=Os07t0182400-01
Chr07	irgsp1_rep	CDS	4356230	4356486	.	-	0	Parent=Os07t0182400-01
Chr07	irgsp1_rep	CDS	4355798	4356142	.	-	1	Parent=Os07t0182400-01
Chr07	irgsp1_rep	CDS	4355628	4355685	.	-	1	Parent=Os07t0182400-01
Chr07	irgsp1_rep	three_prime_UTR	4355211	4355627	.	-	.	Parent=Os07t0182400-01
Chr07	irgsp1_rep	mRNA	4375795	4377801	.	-	.	ID=Os07t0182601-00;Name=Os07t0182601-00;Locus_id=Os07g0182601;Note=Conserved hypothetical protein.;Transcript_evidence=AK374664 (DDBJ);ORF_evidence=B9FVX9 (UniProt);TENOR=Os07t0182601-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	4377751	4377801	.	-	.	Parent=Os07t0182601-00
Chr07	irgsp1_rep	CDS	4377136	4377750	.	-	0	Parent=Os07t0182601-00
Chr07	irgsp1_rep	three_prime_UTR	4377125	4377135	.	-	.	Parent=Os07t0182601-00
Chr07	irgsp1_rep	three_prime_UTR	4376570	4377040	.	-	.	Parent=Os07t0182601-00
Chr07	irgsp1_rep	three_prime_UTR	4375795	4376217	.	-	.	Parent=Os07t0182601-00
Chr07	irgsp1_rep	mRNA	4386065	4391658	.	+	.	ID=Os07t0182900-01;Name=Os07t0182900-01;Locus_id=Os07g0182900;RAP-DB Gene Symbol Synonym(s)=MET1B%2C OsMET1-2;RAP-DB Gene Name Synonym(s)=METHYLTRANSFERASE 1B%2C DNA methyltransferase 1-2;CGSNL Gene Symbol=MET1B;CGSNL Gene Name=METHYLTRANSFERASE 1B;Oryzabase Gene Symbol Synonym(s)=OsMET1b%2C OsMET1-2%2C MET1b%2C MET1;Oryzabase Gene Name Synonym(s)=DNA methyltransferase 1-2;Note=DNA methyltransferase%2C Maintenance of methylation%2C Gene silencing;Transcript_evidence=BK001405;ORF_evidence=B1Q3J6-2;GO=Biological Process: DNA methylation (GO:0006306),Biological Process: C-5 methylation of cytosine (GO:0090116),Molecular Function: DNA binding (GO:0003677),Molecular Function: Chromatin binding (GO:0003682),Molecular Function: DNA (cytosine-5-)-methyltransferase activity (GO:0003886),Molecular Function: methyltransferase activity (GO:0008168),Cellular Component: nucleus (GO:0005634);InterPro=C-5 cytosine methyltransferase (IPR001525),DNA (cytosine-5)-methyltransferase 1%2C eukaryote (IPR017198),DNA (cytosine-5)-methyltransferase 1%2C replication foci domain (IPR022702),Bromo adjacent homology (BAH) domain (IPR001025),S-adenosyl-L-methionine-dependent methyltransferase-like (IPR029063),DNA methylase%2C C-5 cytosine-specific%2C active site (IPR018117);Manual Curation=June 18%2C 2014;Literature_PMID=14513380;Oryzabase=8844;TENOR=Os07t0182900-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	4386065	4386097	.	+	0	Parent=Os07t0182900-01
Chr07	irgsp1_rep	CDS	4386183	4387546	.	+	0	Parent=Os07t0182900-01
Chr07	irgsp1_rep	CDS	4387667	4389149	.	+	1	Parent=Os07t0182900-01
Chr07	irgsp1_rep	CDS	4389268	4389432	.	+	0	Parent=Os07t0182900-01
Chr07	irgsp1_rep	CDS	4389517	4389711	.	+	0	Parent=Os07t0182900-01
Chr07	irgsp1_rep	CDS	4389802	4389915	.	+	0	Parent=Os07t0182900-01
Chr07	irgsp1_rep	CDS	4390003	4390149	.	+	0	Parent=Os07t0182900-01
Chr07	irgsp1_rep	CDS	4390265	4390462	.	+	0	Parent=Os07t0182900-01
Chr07	irgsp1_rep	CDS	4390558	4390836	.	+	0	Parent=Os07t0182900-01
Chr07	irgsp1_rep	CDS	4390932	4391093	.	+	0	Parent=Os07t0182900-01
Chr07	irgsp1_rep	CDS	4391192	4391410	.	+	0	Parent=Os07t0182900-01
Chr07	irgsp1_rep	CDS	4391524	4391658	.	+	0	Parent=Os07t0182900-01
Chr07	irgsp1_rep	mRNA	4380870	4391940	.	+	.	ID=Os07t0182900-02;Name=Os07t0182900-02;Locus_id=Os07g0182900;RAP-DB Gene Symbol Synonym(s)=MET1B%2C OsMET1b;RAP-DB Gene Name Synonym(s)=METHYLTRANSFERASE 1B%2C DNA methyltransferase 1-2;CGSNL Gene Symbol=MET1B;CGSNL Gene Name=METHYLTRANSFERASE 1B;Oryzabase Gene Symbol Synonym(s)=OsMET1b%2C OsMET1-2%2C MET1b%2C MET1;Oryzabase Gene Name Synonym(s)=DNA methyltransferase 1-2;Note=DNA methyltransferase%2C Maintenance of CpG methylation after DNA replication;Transcript_evidence=AB362511;ORF_evidence=B1Q3J6-1;GO=Biological Process: DNA methylation (GO:0006306),Biological Process: C-5 methylation of cytosine (GO:0090116),Molecular Function: DNA binding (GO:0003677),Molecular Function: Chromatin binding (GO:0003682),Molecular Function: DNA (cytosine-5-)-methyltransferase activity (GO:0003886),Molecular Function: methyltransferase activity (GO:0008168),Cellular Component: nucleus (GO:0005634);InterPro=C-5 cytosine methyltransferase (IPR001525),DNA (cytosine-5)-methyltransferase 1%2C eukaryote (IPR017198),DNA (cytosine-5)-methyltransferase 1%2C replication foci domain (IPR022702),Bromo adjacent homology (BAH) domain (IPR001025),S-adenosyl-L-methionine-dependent methyltransferase-like (IPR029063),DNA methylase%2C C-5 cytosine-specific%2C active site (IPR018117);Manual Curation=May 29%2C 2014;Literature_PMID=18281124;Oryzabase=8844
Chr07	irgsp1_rep	five_prime_UTR	4380870	4381277	.	+	.	Parent=Os07t0182900-02
Chr07	irgsp1_rep	five_prime_UTR	4382352	4382465	.	+	.	Parent=Os07t0182900-02
Chr07	irgsp1_rep	five_prime_UTR	4383435	4383440	.	+	.	Parent=Os07t0182900-02
Chr07	irgsp1_rep	CDS	4383441	4383474	.	+	0	Parent=Os07t0182900-02
Chr07	irgsp1_rep	CDS	4386088	4387546	.	+	2	Parent=Os07t0182900-02
Chr07	irgsp1_rep	CDS	4387667	4389149	.	+	1	Parent=Os07t0182900-02
Chr07	irgsp1_rep	CDS	4389268	4389432	.	+	0	Parent=Os07t0182900-02
Chr07	irgsp1_rep	CDS	4389517	4389712	.	+	0	Parent=Os07t0182900-02
Chr07	irgsp1_rep	CDS	4389803	4389914	.	+	2	Parent=Os07t0182900-02
Chr07	irgsp1_rep	CDS	4390002	4390149	.	+	1	Parent=Os07t0182900-02
Chr07	irgsp1_rep	CDS	4390265	4390462	.	+	0	Parent=Os07t0182900-02
Chr07	irgsp1_rep	CDS	4390558	4390836	.	+	0	Parent=Os07t0182900-02
Chr07	irgsp1_rep	CDS	4390932	4391093	.	+	0	Parent=Os07t0182900-02
Chr07	irgsp1_rep	CDS	4391192	4391410	.	+	0	Parent=Os07t0182900-02
Chr07	irgsp1_rep	CDS	4391524	4391658	.	+	0	Parent=Os07t0182900-02
Chr07	irgsp1_rep	three_prime_UTR	4391659	4391940	.	+	.	Parent=Os07t0182900-02
Chr07	irgsp1_rep	mRNA	4381947	4391940	.	+	.	ID=Os07t0182900-03;Name=Os07t0182900-03;Locus_id=Os07g0182900;RAP-DB Gene Symbol Synonym(s)=MET1B%2C OsMET1b;RAP-DB Gene Name Synonym(s)=METHYLTRANSFERASE 1B%2C DNA methyltransferase 1-2;CGSNL Gene Symbol=MET1B;CGSNL Gene Name=METHYLTRANSFERASE 1B;Oryzabase Gene Symbol Synonym(s)=OsMET1b%2C OsMET1-2%2C MET1b%2C MET1;Oryzabase Gene Name Synonym(s)=DNA methyltransferase 1-2;Note=DNA methyltransferase%2C Maintenance of CpG methylation after DNA replication;Transcript_evidence=AB362511;ORF_evidence=B1Q3J6-1;GO=Biological Process: DNA methylation (GO:0006306),Biological Process: C-5 methylation of cytosine (GO:0090116),Molecular Function: DNA binding (GO:0003677),Molecular Function: Chromatin binding (GO:0003682),Molecular Function: DNA (cytosine-5-)-methyltransferase activity (GO:0003886),Molecular Function: methyltransferase activity (GO:0008168),Cellular Component: nucleus (GO:0005634);InterPro=C-5 cytosine methyltransferase (IPR001525),DNA (cytosine-5)-methyltransferase 1%2C eukaryote (IPR017198),DNA (cytosine-5)-methyltransferase 1%2C replication foci domain (IPR022702),Bromo adjacent homology (BAH) domain (IPR001025),S-adenosyl-L-methionine-dependent methyltransferase-like (IPR029063),DNA methylase%2C C-5 cytosine-specific%2C active site (IPR018117);Manual Curation=June 3%2C 2014;Literature_PMID=18281124;Oryzabase=8844
Chr07	irgsp1_rep	five_prime_UTR	4381947	4382133	.	+	.	Parent=Os07t0182900-03
Chr07	irgsp1_rep	five_prime_UTR	4382352	4382465	.	+	.	Parent=Os07t0182900-03
Chr07	irgsp1_rep	five_prime_UTR	4383435	4383440	.	+	.	Parent=Os07t0182900-03
Chr07	irgsp1_rep	CDS	4383441	4383474	.	+	0	Parent=Os07t0182900-03
Chr07	irgsp1_rep	CDS	4386088	4387546	.	+	2	Parent=Os07t0182900-03
Chr07	irgsp1_rep	CDS	4387667	4389149	.	+	1	Parent=Os07t0182900-03
Chr07	irgsp1_rep	CDS	4389268	4389432	.	+	0	Parent=Os07t0182900-03
Chr07	irgsp1_rep	CDS	4389517	4389712	.	+	0	Parent=Os07t0182900-03
Chr07	irgsp1_rep	CDS	4389803	4389914	.	+	2	Parent=Os07t0182900-03
Chr07	irgsp1_rep	CDS	4390002	4390149	.	+	1	Parent=Os07t0182900-03
Chr07	irgsp1_rep	CDS	4390265	4390462	.	+	0	Parent=Os07t0182900-03
Chr07	irgsp1_rep	CDS	4390558	4390836	.	+	0	Parent=Os07t0182900-03
Chr07	irgsp1_rep	CDS	4390932	4391093	.	+	0	Parent=Os07t0182900-03
Chr07	irgsp1_rep	CDS	4391192	4391410	.	+	0	Parent=Os07t0182900-03
Chr07	irgsp1_rep	CDS	4391524	4391658	.	+	0	Parent=Os07t0182900-03
Chr07	irgsp1_rep	three_prime_UTR	4391659	4391940	.	+	.	Parent=Os07t0182900-03
Chr07	irgsp1_rep	mRNA	4382328	4391940	.	+	.	ID=Os07t0182900-04;Name=Os07t0182900-04;Locus_id=Os07g0182900;RAP-DB Gene Symbol Synonym(s)=MET1B%2C OsMET1b;RAP-DB Gene Name Synonym(s)=METHYLTRANSFERASE 1B%2C DNA methyltransferase 1-2;CGSNL Gene Symbol=MET1B;CGSNL Gene Name=METHYLTRANSFERASE 1B;Oryzabase Gene Symbol Synonym(s)=OsMET1b%2C OsMET1-2%2C MET1b%2C MET1;Oryzabase Gene Name Synonym(s)=DNA methyltransferase 1-2;Note=DNA methyltransferase%2C Maintenance of CpG methylation after DNA replication;Transcript_evidence=AB362511;ORF_evidence=B1Q3J6-1;GO=Biological Process: DNA methylation (GO:0006306),Biological Process: C-5 methylation of cytosine (GO:0090116),Molecular Function: DNA binding (GO:0003677),Molecular Function: Chromatin binding (GO:0003682),Molecular Function: DNA (cytosine-5-)-methyltransferase activity (GO:0003886),Molecular Function: methyltransferase activity (GO:0008168),Cellular Component: nucleus (GO:0005634);InterPro=C-5 cytosine methyltransferase (IPR001525),DNA (cytosine-5)-methyltransferase 1%2C eukaryote (IPR017198),DNA (cytosine-5)-methyltransferase 1%2C replication foci domain (IPR022702),Bromo adjacent homology (BAH) domain (IPR001025),S-adenosyl-L-methionine-dependent methyltransferase-like (IPR029063),DNA methylase%2C C-5 cytosine-specific%2C active site (IPR018117);Manual Curation=June 3%2C 2014;Literature_PMID=18281124;Oryzabase=8844
Chr07	irgsp1_rep	five_prime_UTR	4382328	4382465	.	+	.	Parent=Os07t0182900-04
Chr07	irgsp1_rep	five_prime_UTR	4383435	4383440	.	+	.	Parent=Os07t0182900-04
Chr07	irgsp1_rep	CDS	4383441	4383474	.	+	0	Parent=Os07t0182900-04
Chr07	irgsp1_rep	CDS	4386088	4387546	.	+	2	Parent=Os07t0182900-04
Chr07	irgsp1_rep	CDS	4387667	4389149	.	+	1	Parent=Os07t0182900-04
Chr07	irgsp1_rep	CDS	4389268	4389432	.	+	0	Parent=Os07t0182900-04
Chr07	irgsp1_rep	CDS	4389517	4389712	.	+	0	Parent=Os07t0182900-04
Chr07	irgsp1_rep	CDS	4389803	4389914	.	+	2	Parent=Os07t0182900-04
Chr07	irgsp1_rep	CDS	4390002	4390149	.	+	1	Parent=Os07t0182900-04
Chr07	irgsp1_rep	CDS	4390265	4390462	.	+	0	Parent=Os07t0182900-04
Chr07	irgsp1_rep	CDS	4390558	4390836	.	+	0	Parent=Os07t0182900-04
Chr07	irgsp1_rep	CDS	4390932	4391093	.	+	0	Parent=Os07t0182900-04
Chr07	irgsp1_rep	CDS	4391192	4391410	.	+	0	Parent=Os07t0182900-04
Chr07	irgsp1_rep	CDS	4391524	4391658	.	+	0	Parent=Os07t0182900-04
Chr07	irgsp1_rep	three_prime_UTR	4391659	4391940	.	+	.	Parent=Os07t0182900-04
Chr07	irgsp1_rep	mRNA	4382328	4391940	.	+	.	ID=Os07t0182900-05;Name=Os07t0182900-05;Locus_id=Os07g0182900;RAP-DB Gene Symbol Synonym(s)=MET1B%2C OsMET1b;RAP-DB Gene Name Synonym(s)=METHYLTRANSFERASE 1B%2C DNA methyltransferase 1-2;CGSNL Gene Symbol=MET1B;CGSNL Gene Name=METHYLTRANSFERASE 1B;Oryzabase Gene Symbol Synonym(s)=OsMET1b%2C OsMET1-2%2C MET1b%2C MET1;Oryzabase Gene Name Synonym(s)=DNA methyltransferase 1-2;Note=DNA methyltransferase%2C Maintenance of CpG methylation after DNA replication;Transcript_evidence=AB362511;ORF_evidence=B1Q3J6-3;GO=Biological Process: DNA methylation (GO:0006306),Biological Process: C-5 methylation of cytosine (GO:0090116),Molecular Function: DNA binding (GO:0003677),Molecular Function: Chromatin binding (GO:0003682),Molecular Function: DNA (cytosine-5-)-methyltransferase activity (GO:0003886),Molecular Function: methyltransferase activity (GO:0008168),Cellular Component: nucleus (GO:0005634);InterPro=C-5 cytosine methyltransferase (IPR001525),DNA (cytosine-5)-methyltransferase 1%2C eukaryote (IPR017198),DNA (cytosine-5)-methyltransferase 1%2C replication foci domain (IPR022702),Bromo adjacent homology (BAH) domain (IPR001025),S-adenosyl-L-methionine-dependent methyltransferase-like (IPR029063),DNA methylase%2C C-5 cytosine-specific%2C active site (IPR018117);Manual Curation=June 3%2C 2014;Literature_PMID=18281124;Oryzabase=8844
Chr07	irgsp1_rep	five_prime_UTR	4382328	4382465	.	+	.	Parent=Os07t0182900-05
Chr07	irgsp1_rep	five_prime_UTR	4386088	4386182	.	+	.	Parent=Os07t0182900-05
Chr07	irgsp1_rep	CDS	4386183	4387546	.	+	0	Parent=Os07t0182900-05
Chr07	irgsp1_rep	CDS	4387667	4389149	.	+	1	Parent=Os07t0182900-05
Chr07	irgsp1_rep	CDS	4389268	4389432	.	+	0	Parent=Os07t0182900-05
Chr07	irgsp1_rep	CDS	4389517	4389712	.	+	0	Parent=Os07t0182900-05
Chr07	irgsp1_rep	CDS	4389803	4389914	.	+	2	Parent=Os07t0182900-05
Chr07	irgsp1_rep	CDS	4390002	4390149	.	+	1	Parent=Os07t0182900-05
Chr07	irgsp1_rep	CDS	4390265	4390462	.	+	0	Parent=Os07t0182900-05
Chr07	irgsp1_rep	CDS	4390558	4390836	.	+	0	Parent=Os07t0182900-05
Chr07	irgsp1_rep	CDS	4390932	4391093	.	+	0	Parent=Os07t0182900-05
Chr07	irgsp1_rep	CDS	4391192	4391410	.	+	0	Parent=Os07t0182900-05
Chr07	irgsp1_rep	CDS	4391524	4391658	.	+	0	Parent=Os07t0182900-05
Chr07	irgsp1_rep	three_prime_UTR	4391659	4391940	.	+	.	Parent=Os07t0182900-05
Chr07	irgsp1_rep	mRNA	4386149	4391940	.	+	.	ID=Os07t0182900-06;Name=Os07t0182900-06;Locus_id=Os07g0182900;RAP-DB Gene Symbol Synonym(s)=MET1B%2C OsMET1b;RAP-DB Gene Name Synonym(s)=METHYLTRANSFERASE 1B%2C DNA methyltransferase 1-2;CGSNL Gene Symbol=MET1B;CGSNL Gene Name=METHYLTRANSFERASE 1B;Oryzabase Gene Symbol Synonym(s)=OsMET1b%2C OsMET1-2%2C MET1b%2C MET1;Oryzabase Gene Name Synonym(s)=DNA methyltransferase 1-2;Note=DNA methyltransferase%2C Maintenance of CpG methylation after DNA replication;Transcript_evidence=AB362511;ORF_evidence=B1Q3J6-3;GO=Biological Process: DNA methylation (GO:0006306),Biological Process: C-5 methylation of cytosine (GO:0090116),Molecular Function: DNA binding (GO:0003677),Molecular Function: Chromatin binding (GO:0003682),Molecular Function: DNA (cytosine-5-)-methyltransferase activity (GO:0003886),Molecular Function: methyltransferase activity (GO:0008168),Cellular Component: nucleus (GO:0005634);InterPro=C-5 cytosine methyltransferase (IPR001525),DNA (cytosine-5)-methyltransferase 1%2C eukaryote (IPR017198),DNA (cytosine-5)-methyltransferase 1%2C replication foci domain (IPR022702),Bromo adjacent homology (BAH) domain (IPR001025),S-adenosyl-L-methionine-dependent methyltransferase-like (IPR029063),DNA methylase%2C C-5 cytosine-specific%2C active site (IPR018117);Manual Curation=June 3%2C 2014;Literature_PMID=18281124;Oryzabase=8844
Chr07	irgsp1_rep	five_prime_UTR	4386149	4386182	.	+	.	Parent=Os07t0182900-06
Chr07	irgsp1_rep	CDS	4386183	4387546	.	+	0	Parent=Os07t0182900-06
Chr07	irgsp1_rep	CDS	4387667	4389149	.	+	1	Parent=Os07t0182900-06
Chr07	irgsp1_rep	CDS	4389268	4389432	.	+	0	Parent=Os07t0182900-06
Chr07	irgsp1_rep	CDS	4389517	4389712	.	+	0	Parent=Os07t0182900-06
Chr07	irgsp1_rep	CDS	4389803	4389914	.	+	2	Parent=Os07t0182900-06
Chr07	irgsp1_rep	CDS	4390002	4390149	.	+	1	Parent=Os07t0182900-06
Chr07	irgsp1_rep	CDS	4390265	4390462	.	+	0	Parent=Os07t0182900-06
Chr07	irgsp1_rep	CDS	4390558	4390836	.	+	0	Parent=Os07t0182900-06
Chr07	irgsp1_rep	CDS	4390932	4391093	.	+	0	Parent=Os07t0182900-06
Chr07	irgsp1_rep	CDS	4391192	4391410	.	+	0	Parent=Os07t0182900-06
Chr07	irgsp1_rep	CDS	4391524	4391658	.	+	0	Parent=Os07t0182900-06
Chr07	irgsp1_rep	three_prime_UTR	4391659	4391940	.	+	.	Parent=Os07t0182900-06
Chr07	irgsp1_rep	mRNA	4401187	4402039	.	-	.	ID=Os07t0183050-00;Name=Os07t0183050-00;Locus_id=Os07g0183050;Note=Conserved hypothetical protein.;Transcript_evidence=EU963459 (DDBJ);ORF_evidence=B9FVV1 (UniProt);TENOR=Os07t0183050-00
Chr07	irgsp1_rep	CDS	4401596	4402039	.	-	0	Parent=Os07t0183050-00
Chr07	irgsp1_rep	three_prime_UTR	4401187	4401595	.	-	.	Parent=Os07t0183050-00
Chr07	irgsp1_rep	mRNA	4402060	4403139	.	-	.	ID=Os07t0183100-00;Name=Os07t0183100-00;Locus_id=Os07g0183100;CGSNL Gene Symbol=ARF20;CGSNL Gene Name=AUXIN RESPONSE FACTOR 20;Oryzabase Gene Symbol Synonym(s)=OsARF20;Oryzabase Gene Name Synonym(s)=auxin response factor-20%2C auxin response factor 20;Note=Transcriptional factor B3 domain containing protein.;Transcript_evidence=BT067850 (DDBJ);ORF_evidence=B9FVV1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: response to hormone stimulus (GO:0009725),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),Auxin response factor (IPR010525),DNA-binding pseudobarrel domain (IPR015300);Oryzabase=10014;TENOR=Os07t0183100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	4403137	4403139	.	-	.	Parent=Os07t0183100-00
Chr07	irgsp1_rep	CDS	4402060	4403136	.	-	0	Parent=Os07t0183100-00
Chr07	irgsp1_rep	mRNA	4403712	4405484	.	+	.	ID=Os07t0183200-01;Name=Os07t0183200-01;Locus_id=Os07g0183200;Note=Transcriptional factor B3 family protein.;Transcript_evidence=AK064661 (DDBJ%2C Best hit);ORF_evidence=Q8H507 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=002-115-A08;Expression=AK064661;TENOR=Os07t0183200-01;KEGG=Os07t0183200-01
Chr07	irgsp1_rep	five_prime_UTR	4403712	4403784	.	+	.	Parent=Os07t0183200-01
Chr07	irgsp1_rep	CDS	4403785	4404786	.	+	0	Parent=Os07t0183200-01
Chr07	irgsp1_rep	CDS	4405012	4405233	.	+	0	Parent=Os07t0183200-01
Chr07	irgsp1_rep	three_prime_UTR	4405234	4405484	.	+	.	Parent=Os07t0183200-01
Chr07	irgsp1_rep	mRNA	4406706	4409656	.	+	.	ID=Os07t0183350-00;Name=Os07t0183350-00;Locus_id=Os07g0183350;Note=B3 domain-containing protein Os07g0183300/Os07g0183600.;Transcript_evidence=Q8H506 (UniProt);ORF_evidence=Q8H506 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: response to hormone stimulus (GO:0009725),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),Auxin response factor (IPR010525),DNA-binding pseudobarrel domain (IPR015300);TENOR=Os07t0183350-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	4406706	4407695	.	+	0	Parent=Os07t0183350-00
Chr07	irgsp1_rep	CDS	4407784	4407915	.	+	0	Parent=Os07t0183350-00
Chr07	irgsp1_rep	CDS	4408245	4409024	.	+	0	Parent=Os07t0183350-00
Chr07	irgsp1_rep	CDS	4409207	4409494	.	+	0	Parent=Os07t0183350-00
Chr07	irgsp1_rep	CDS	4409558	4409656	.	+	0	Parent=Os07t0183350-00
Chr07	irgsp1_rep	mRNA	4432593	4434430	.	+	.	ID=Os07t0183700-00;Name=Os07t0183700-00;Locus_id=Os07g0183700;Note=B3 domain-containing protein Os07g0183700.;Transcript_evidence=A3BH91 (UniProt);ORF_evidence=A3BH91 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: response to hormone stimulus (GO:0009725),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),Auxin response factor (IPR010525),DNA-binding pseudobarrel domain (IPR015300);TENOR=Os07t0183700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	4432593	4432858	.	+	0	Parent=Os07t0183700-00
Chr07	irgsp1_rep	CDS	4433122	4434430	.	+	1	Parent=Os07t0183700-00
Chr07	irgsp1_rep	mRNA	4457611	4459225	.	+	.	ID=Os07t0184200-01;Name=Os07t0184200-01;Locus_id=Os07g0184200;Note=Protein of unknown function DUF295 family protein.;Transcript_evidence=AK106871 (DDBJ%2C Best hit);ORF_evidence=A3BH93 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174);NIAS_FLcDNA=002-118-D08;Expression=AK106871;TENOR=Os07t0184200-01;KEGG=Os07t0184200-01
Chr07	irgsp1_rep	five_prime_UTR	4457611	4457711	.	+	.	Parent=Os07t0184200-01
Chr07	irgsp1_rep	CDS	4457712	4459088	.	+	0	Parent=Os07t0184200-01
Chr07	irgsp1_rep	three_prime_UTR	4459089	4459225	.	+	.	Parent=Os07t0184200-01
Chr07	irgsp1_rep	mRNA	4460555	4460829	.	-	.	ID=Os07t0184300-01;Name=Os07t0184300-01;Locus_id=Os07g0184300;Oryzabase Gene Symbol Synonym(s)=rig%2C RPS15%2C OsRPS15;Oryzabase Gene Name Synonym(s)=Rat insulinoma gene%2C rat insulinoma gene homolog%2C ribosomal protein S15%2C 40S ribosomal protein S15%2C ribosomal protein small subunit 15;Note=Non-protein coding transcript.;Transcript_evidence=AK059157 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-023-D01;Oryzabase=13762;TENOR=Os07t0184300-01
Chr07	irgsp1_rep	exon	4460555	4460829	.	-	.	Parent=Os07t0184300-01
Chr07	irgsp1_rep	mRNA	4467429	4468766	.	+	.	ID=Os07t0184500-01;Name=Os07t0184500-01;Locus_id=Os07g0184500;Note=Conserved hypothetical protein.;Transcript_evidence=AK242092 (DDBJ%2C Best hit);ORF_evidence=NP_001052468.1 (RefSeq);NIAS_FLcDNA=J075141B22;TENOR=Os07t0184500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	4467429	4467559	.	+	.	Parent=Os07t0184500-01
Chr07	irgsp1_rep	five_prime_UTR	4467854	4468047	.	+	.	Parent=Os07t0184500-01
Chr07	irgsp1_rep	five_prime_UTR	4468144	4468175	.	+	.	Parent=Os07t0184500-01
Chr07	irgsp1_rep	five_prime_UTR	4468347	4468349	.	+	.	Parent=Os07t0184500-01
Chr07	irgsp1_rep	CDS	4468350	4468410	.	+	0	Parent=Os07t0184500-01
Chr07	irgsp1_rep	CDS	4468516	4468661	.	+	2	Parent=Os07t0184500-01
Chr07	irgsp1_rep	three_prime_UTR	4468662	4468766	.	+	.	Parent=Os07t0184500-01
Chr07	irgsp1_rep	mRNA	4472355	4473004	.	+	.	ID=Os07t0184633-00;Name=Os07t0184633-00;Locus_id=Os07g0184633;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001175083.1 (RefSeq);TENOR=Os07t0184633-00;KEGG=Os07t0184633-00
Chr07	irgsp1_rep	CDS	4472355	4472414	.	+	0	Parent=Os07t0184633-00
Chr07	irgsp1_rep	CDS	4472593	4472729	.	+	0	Parent=Os07t0184633-00
Chr07	irgsp1_rep	CDS	4472872	4473004	.	+	1	Parent=Os07t0184633-00
Chr07	irgsp1_rep	mRNA	4483447	4484756	.	+	.	ID=Os07t0184800-01;Name=Os07t0184800-01;Locus_id=Os07g0184800;Note=Similar to Variant of histone H1.;Transcript_evidence=AK059544 (DDBJ%2C Best hit),AK099050 (DDBJ%2C Best hit),AK102642 (DDBJ%2C Best hit),AK106132 (DDBJ%2C Best hit);ORF_evidence=NP_001105088.1 (RefSeq);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H1/H5 (IPR005818),Histone H5 (IPR005819),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),AT hook%2C DNA-binding motif (IPR017956);NIAS_FLcDNA=001-029-F03,J013148D20,J033100F04,001-207-F12;TENOR=Os07t0184800-01
Chr07	irgsp1_rep	five_prime_UTR	4483447	4483556	.	+	.	Parent=Os07t0184800-01
Chr07	irgsp1_rep	CDS	4483557	4483799	.	+	0	Parent=Os07t0184800-01
Chr07	irgsp1_rep	CDS	4483933	4484526	.	+	0	Parent=Os07t0184800-01
Chr07	irgsp1_rep	three_prime_UTR	4484527	4484756	.	+	.	Parent=Os07t0184800-01
Chr07	irgsp1_rep	mRNA	4483879	4484607	.	-	.	ID=Os07t0184850-00;Name=Os07t0184850-00;Locus_id=Os07g0184850;Note=Similar to histone H1.;Transcript_evidence=EU961904 (DDBJ);ORF_evidence=NP_001105430.1 (RefSeq);TENOR=Os07t0184850-00
Chr07	irgsp1_rep	CDS	4483879	4484607	.	-	0	Parent=Os07t0184850-00
Chr07	irgsp1_rep	mRNA	4485257	4496249	.	+	.	ID=Os07t0184900-01;Name=Os07t0184900-01;Locus_id=Os07g0184900;RAP-DB Gene Symbol Synonym(s)=OsKu70%2C Ku70;RAP-DB Gene Name Synonym(s)=rice homolog of Ku70%2C Ku70 homolog;CGSNL Gene Symbol=KU70;Oryzabase Gene Symbol Synonym(s)=OsKu70%2C Ku70;Oryzabase Gene Name Synonym(s)=rice homolog of Ku70%2C Ku70 homolog;Note=ATP-dependent DNA helicase 2 subunit KU70%2C Maintenance of Chromosomal stability%2C Developmental growth%2C Telomere length regulation;Transcript_evidence=AK102066;ORF_evidence=Q7F1M0;GO=Biological Process: telomere maintenance (GO:0000723),Biological Process: double-strand break repair via nonhomologous end joining (GO:0006303),Molecular Function: DNA binding (GO:0003677),Molecular Function: damaged DNA binding (GO:0003684),Molecular Function: ATP-dependent DNA helicase activity (GO:0004003),Molecular Function: telomeric DNA binding (GO:0042162),Cellular Component: nucleus (GO:0005634),Cellular Component: Ku70:Ku80 complex (GO:0043564);InterPro=Ku70 (IPR006165),von Willebrand factor%2C type A (IPR002035),Ku70/Ku80%2C N-terminal alpha/beta (IPR005161),SPOC-like%2C C-terminal domain (IPR016194),Ku70/Ku80 beta-barrel domain (IPR006164),Ku70%2C bridge and pillars domain (IPR027388),Ku70/Ku80 C-terminal arm (IPR005160),SAP domain (IPR003034);NIAS_FLcDNA=J033082F01;Manual Curation=February 18%2C 2016;Literature_PMID=19923234;Oryzabase=11607;Expression=AK102066;TENOR=Os07t0184900-01;KEGG=Os07t0184900-01
Chr07	irgsp1_rep	five_prime_UTR	4485257	4485314	.	+	.	Parent=Os07t0184900-01
Chr07	irgsp1_rep	CDS	4485315	4485377	.	+	0	Parent=Os07t0184900-01
Chr07	irgsp1_rep	CDS	4485475	4485549	.	+	0	Parent=Os07t0184900-01
Chr07	irgsp1_rep	CDS	4485762	4485878	.	+	0	Parent=Os07t0184900-01
Chr07	irgsp1_rep	CDS	4486381	4486495	.	+	0	Parent=Os07t0184900-01
Chr07	irgsp1_rep	CDS	4487176	4487281	.	+	2	Parent=Os07t0184900-01
Chr07	irgsp1_rep	CDS	4487532	4487649	.	+	1	Parent=Os07t0184900-01
Chr07	irgsp1_rep	CDS	4487753	4487836	.	+	0	Parent=Os07t0184900-01
Chr07	irgsp1_rep	CDS	4487907	4487965	.	+	0	Parent=Os07t0184900-01
Chr07	irgsp1_rep	CDS	4488545	4488678	.	+	1	Parent=Os07t0184900-01
Chr07	irgsp1_rep	CDS	4488780	4488823	.	+	2	Parent=Os07t0184900-01
Chr07	irgsp1_rep	CDS	4488948	4489024	.	+	0	Parent=Os07t0184900-01
Chr07	irgsp1_rep	CDS	4489263	4489410	.	+	1	Parent=Os07t0184900-01
Chr07	irgsp1_rep	CDS	4490003	4490064	.	+	0	Parent=Os07t0184900-01
Chr07	irgsp1_rep	CDS	4493549	4493609	.	+	1	Parent=Os07t0184900-01
Chr07	irgsp1_rep	CDS	4494060	4494152	.	+	0	Parent=Os07t0184900-01
Chr07	irgsp1_rep	CDS	4494220	4494337	.	+	0	Parent=Os07t0184900-01
Chr07	irgsp1_rep	CDS	4494851	4494953	.	+	2	Parent=Os07t0184900-01
Chr07	irgsp1_rep	CDS	4495190	4495373	.	+	1	Parent=Os07t0184900-01
Chr07	irgsp1_rep	CDS	4495822	4495935	.	+	0	Parent=Os07t0184900-01
Chr07	irgsp1_rep	three_prime_UTR	4495936	4496249	.	+	.	Parent=Os07t0184900-01
Chr07	irgsp1_rep	mRNA	4485260	4490375	.	+	.	ID=Os07t0184900-02;Name=Os07t0184900-02;Locus_id=Os07g0184900;CGSNL Gene Symbol=KU70;Oryzabase Gene Symbol Synonym(s)=OsKu70%2C Ku70;Oryzabase Gene Name Synonym(s)=rice homolog of Ku70%2C Ku70 homolog;Note=Hypothetical conserved gene.;Transcript_evidence=AK102995 (DDBJ%2C Best hit);ORF_evidence=Q7F1M0 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Ku70/Ku80%2C N-terminal alpha/beta (IPR005161),Spen Paralogue and Orthologue SPOC%2C C-terminal-like (IPR016194);NIAS_FLcDNA=J033116E13;Oryzabase=11607;Expression=AK102995;TENOR=Os07t0184900-02;KEGG=Os07t0184900-02
Chr07	irgsp1_rep	five_prime_UTR	4485260	4485314	.	+	.	Parent=Os07t0184900-02
Chr07	irgsp1_rep	CDS	4485315	4485377	.	+	0	Parent=Os07t0184900-02
Chr07	irgsp1_rep	CDS	4485475	4485549	.	+	0	Parent=Os07t0184900-02
Chr07	irgsp1_rep	CDS	4485762	4485878	.	+	0	Parent=Os07t0184900-02
Chr07	irgsp1_rep	CDS	4486381	4486495	.	+	0	Parent=Os07t0184900-02
Chr07	irgsp1_rep	CDS	4487176	4487281	.	+	2	Parent=Os07t0184900-02
Chr07	irgsp1_rep	CDS	4487532	4487649	.	+	1	Parent=Os07t0184900-02
Chr07	irgsp1_rep	CDS	4487753	4487836	.	+	0	Parent=Os07t0184900-02
Chr07	irgsp1_rep	CDS	4487907	4487965	.	+	0	Parent=Os07t0184900-02
Chr07	irgsp1_rep	CDS	4488545	4488678	.	+	1	Parent=Os07t0184900-02
Chr07	irgsp1_rep	CDS	4488780	4488823	.	+	2	Parent=Os07t0184900-02
Chr07	irgsp1_rep	CDS	4488948	4489028	.	+	0	Parent=Os07t0184900-02
Chr07	irgsp1_rep	three_prime_UTR	4489029	4490375	.	+	.	Parent=Os07t0184900-02
Chr07	irgsp1_rep	mRNA	4486392	4498866	.	+	.	ID=Os07t0184900-03;Name=Os07t0184900-03;Locus_id=Os07g0184900;CGSNL Gene Symbol=KU70;Oryzabase Gene Symbol Synonym(s)=OsKu70%2C Ku70;Oryzabase Gene Name Synonym(s)=rice homolog of Ku70%2C Ku70 homolog;Note=Similar to Ku70 homolog.;Transcript_evidence=AK099980 (DDBJ%2C Best hit);ORF_evidence=Q7F1M0 (UniProt);InterPro=Ku70/Ku80%2C N-terminal alpha/beta (IPR005161);NIAS_FLcDNA=J013129E14;Oryzabase=11607;Expression=AK099980;TENOR=Os07t0184900-03;KEGG=Os07t0184900-03
Chr07	irgsp1_rep	five_prime_UTR	4486392	4486392	.	+	.	Parent=Os07t0184900-03
Chr07	irgsp1_rep	CDS	4486393	4486495	.	+	0	Parent=Os07t0184900-03
Chr07	irgsp1_rep	CDS	4487176	4487281	.	+	2	Parent=Os07t0184900-03
Chr07	irgsp1_rep	CDS	4487532	4487649	.	+	1	Parent=Os07t0184900-03
Chr07	irgsp1_rep	CDS	4487753	4487836	.	+	0	Parent=Os07t0184900-03
Chr07	irgsp1_rep	CDS	4487907	4487965	.	+	0	Parent=Os07t0184900-03
Chr07	irgsp1_rep	CDS	4488528	4488558	.	+	1	Parent=Os07t0184900-03
Chr07	irgsp1_rep	three_prime_UTR	4488559	4488678	.	+	.	Parent=Os07t0184900-03
Chr07	irgsp1_rep	three_prime_UTR	4488780	4488823	.	+	.	Parent=Os07t0184900-03
Chr07	irgsp1_rep	three_prime_UTR	4488948	4489024	.	+	.	Parent=Os07t0184900-03
Chr07	irgsp1_rep	three_prime_UTR	4489263	4489410	.	+	.	Parent=Os07t0184900-03
Chr07	irgsp1_rep	three_prime_UTR	4490003	4490064	.	+	.	Parent=Os07t0184900-03
Chr07	irgsp1_rep	three_prime_UTR	4493549	4493609	.	+	.	Parent=Os07t0184900-03
Chr07	irgsp1_rep	three_prime_UTR	4494060	4494152	.	+	.	Parent=Os07t0184900-03
Chr07	irgsp1_rep	three_prime_UTR	4494220	4494337	.	+	.	Parent=Os07t0184900-03
Chr07	irgsp1_rep	three_prime_UTR	4494851	4494953	.	+	.	Parent=Os07t0184900-03
Chr07	irgsp1_rep	three_prime_UTR	4495190	4495373	.	+	.	Parent=Os07t0184900-03
Chr07	irgsp1_rep	three_prime_UTR	4495822	4498866	.	+	.	Parent=Os07t0184900-03
Chr07	irgsp1_rep	mRNA	4490111	4491826	.	+	.	ID=Os07t0184900-04;Name=Os07t0184900-04;Locus_id=Os07g0184900;CGSNL Gene Symbol=KU70;Oryzabase Gene Symbol Synonym(s)=OsKu70%2C Ku70;Oryzabase Gene Name Synonym(s)=rice homolog of Ku70%2C Ku70 homolog;Note=Hypothetical conserved gene.;Transcript_evidence=AK064466 (DDBJ%2C Best hit);ORF_evidence=B8B7W2 (UniProt);NIAS_FLcDNA=002-110-G10;Oryzabase=11607;Expression=AK064466;TENOR=Os07t0184900-04;KEGG=Os07t0184900-04
Chr07	irgsp1_rep	five_prime_UTR	4490111	4490191	.	+	.	Parent=Os07t0184900-04
Chr07	irgsp1_rep	CDS	4490192	4490320	.	+	0	Parent=Os07t0184900-04
Chr07	irgsp1_rep	three_prime_UTR	4490321	4491826	.	+	.	Parent=Os07t0184900-04
Chr07	irgsp1_rep	mRNA	4490835	4491612	.	-	.	ID=Os07t0184950-00;Name=Os07t0184950-00;Locus_id=Os07g0184950;Note=Conserved hypothetical protein.;Transcript_evidence=CT831736 (DDBJ%2C Best hit);ORF_evidence=Q6ZGF9 (UniProt);TENOR=Os07t0184950-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	4491535	4491612	.	-	.	Parent=Os07t0184950-00
Chr07	irgsp1_rep	CDS	4491463	4491534	.	-	0	Parent=Os07t0184950-00
Chr07	irgsp1_rep	three_prime_UTR	4490835	4491462	.	-	.	Parent=Os07t0184950-00
Chr07	irgsp1_rep	mRNA	4499107	4501911	.	-	.	ID=Os07t0185000-01;Name=Os07t0185000-01;Locus_id=Os07g0185000;CGSNL Gene Symbol=WNK3;CGSNL Gene Name=WITH NO LYSINE KINASE 3;Oryzabase Gene Symbol Synonym(s)=OsWNK3;Oryzabase Gene Name Synonym(s)=With No Lysine kinase 3%2C WNK protein kinase 3%2C WNK kinase 3;Note=Similar to MAP kinase (Ser/Thr kinase).;Transcript_evidence=AK100930 (DDBJ%2C Best hit);ORF_evidence=Q0D847 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023135J22;Oryzabase=20438;Expression=AK100930;TENOR=Os07t0185000-01;KEGG=Os07t0185000-01 (EC:2.7.11.1)
Chr07	irgsp1_rep	five_prime_UTR	4501803	4501911	.	-	.	Parent=Os07t0185000-01
Chr07	irgsp1_rep	CDS	4501698	4501802	.	-	0	Parent=Os07t0185000-01
Chr07	irgsp1_rep	CDS	4501571	4501608	.	-	0	Parent=Os07t0185000-01
Chr07	irgsp1_rep	CDS	4500846	4501452	.	-	1	Parent=Os07t0185000-01
Chr07	irgsp1_rep	CDS	4500264	4500768	.	-	0	Parent=Os07t0185000-01
Chr07	irgsp1_rep	CDS	4499596	4500146	.	-	2	Parent=Os07t0185000-01
Chr07	irgsp1_rep	three_prime_UTR	4499107	4499595	.	-	.	Parent=Os07t0185000-01
Chr07	irgsp1_rep	mRNA	4499117	4501900	.	-	.	ID=Os07t0185000-02;Name=Os07t0185000-02;Locus_id=Os07g0185000;CGSNL Gene Symbol=WNK3;CGSNL Gene Name=WITH NO LYSINE KINASE 3;Oryzabase Gene Symbol Synonym(s)=OsWNK3;Oryzabase Gene Name Synonym(s)=With No Lysine kinase 3%2C WNK protein kinase 3%2C WNK kinase 3;Note=Similar to cDNA clone:J023135J22%2C full insert sequence.;Transcript_evidence=AK072273 (DDBJ%2C Best hit);ORF_evidence=B7ER38 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023004B14;Oryzabase=20438;Expression=AK072273;TENOR=Os07t0185000-02;KEGG=Os07t0185000-02 (EC:2.7.11.1)
Chr07	irgsp1_rep	five_prime_UTR	4501803	4501900	.	-	.	Parent=Os07t0185000-02
Chr07	irgsp1_rep	CDS	4501698	4501802	.	-	0	Parent=Os07t0185000-02
Chr07	irgsp1_rep	CDS	4501571	4501608	.	-	0	Parent=Os07t0185000-02
Chr07	irgsp1_rep	CDS	4500840	4501452	.	-	1	Parent=Os07t0185000-02
Chr07	irgsp1_rep	three_prime_UTR	4500264	4500839	.	-	.	Parent=Os07t0185000-02
Chr07	irgsp1_rep	three_prime_UTR	4499117	4500146	.	-	.	Parent=Os07t0185000-02
Chr07	irgsp1_rep	mRNA	4498946	4500163	.	-	.	ID=Os07t0185000-03;Name=Os07t0185000-03;Locus_id=Os07g0185000;CGSNL Gene Symbol=WNK3;CGSNL Gene Name=WITH NO LYSINE KINASE 3;Oryzabase Gene Symbol Synonym(s)=OsWNK3;Oryzabase Gene Name Synonym(s)=With No Lysine kinase 3%2C WNK protein kinase 3%2C WNK kinase 3;Note=Similar to cDNA clone:J023135J22%2C full insert sequence.;Transcript_evidence=AK060552 (DDBJ%2C Best hit);ORF_evidence=B7ER38 (UniProt);NIAS_FLcDNA=001-022-A06;Oryzabase=20438;Expression=AK060552;TENOR=Os07t0185000-03;KEGG=Os07t0185000-03
Chr07	irgsp1_rep	five_prime_UTR	4500157	4500163	.	-	.	Parent=Os07t0185000-03
Chr07	irgsp1_rep	CDS	4499596	4500156	.	-	0	Parent=Os07t0185000-03
Chr07	irgsp1_rep	three_prime_UTR	4498946	4499595	.	-	.	Parent=Os07t0185000-03
Chr07	irgsp1_rep	mRNA	4499384	4500796	.	+	.	ID=Os07t0185100-01;Name=Os07t0185100-01;Locus_id=Os07g0185100;Note=Hypothetical protein.;Transcript_evidence=AK119508 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-134-F07;TENOR=Os07t0185100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	4499384	4499635	.	+	.	Parent=Os07t0185100-01
Chr07	irgsp1_rep	CDS	4499636	4500301	.	+	0	Parent=Os07t0185100-01
Chr07	irgsp1_rep	three_prime_UTR	4500302	4500796	.	+	.	Parent=Os07t0185100-01
Chr07	irgsp1_rep	mRNA	4503371	4507682	.	-	.	ID=Os07t0185200-01;Name=Os07t0185200-01;Locus_id=Os07g0185200;Note=Similar to Membrane related protein-like.;Transcript_evidence=AK066157 (DDBJ%2C Best hit);ORF_evidence=Q7F1L8 (UniProt);InterPro=Lipid-binding START (IPR002913),START-like domain (IPR023393);NIAS_FLcDNA=J013059B01;Expression=AK066157;TENOR=Os07t0185200-01;KEGG=Os07t0185200-01
Chr07	irgsp1_rep	five_prime_UTR	4507591	4507682	.	-	.	Parent=Os07t0185200-01
Chr07	irgsp1_rep	CDS	4507469	4507590	.	-	0	Parent=Os07t0185200-01
Chr07	irgsp1_rep	CDS	4507205	4507327	.	-	1	Parent=Os07t0185200-01
Chr07	irgsp1_rep	CDS	4506040	4506199	.	-	1	Parent=Os07t0185200-01
Chr07	irgsp1_rep	CDS	4505517	4505693	.	-	0	Parent=Os07t0185200-01
Chr07	irgsp1_rep	CDS	4505341	4505424	.	-	0	Parent=Os07t0185200-01
Chr07	irgsp1_rep	CDS	4504310	4504391	.	-	0	Parent=Os07t0185200-01
Chr07	irgsp1_rep	CDS	4503740	4504179	.	-	2	Parent=Os07t0185200-01
Chr07	irgsp1_rep	three_prime_UTR	4503371	4503739	.	-	.	Parent=Os07t0185200-01
Chr07	irgsp1_rep	mRNA	4503371	4507031	.	-	.	ID=Os07t0185200-02;Name=Os07t0185200-02;Locus_id=Os07g0185200;Note=Similar to predicted protein.;Transcript_evidence=AK060743 (DDBJ%2C Best hit);ORF_evidence=NP_176653.1 (RefSeq);InterPro=Lipid-binding START (IPR002913),START-like domain (IPR023393);NIAS_FLcDNA=001-032-E03;Expression=AK060743;TENOR=Os07t0185200-02;KEGG=Os07t0185200-02
Chr07	irgsp1_rep	five_prime_UTR	4506250	4507031	.	-	.	Parent=Os07t0185200-02
Chr07	irgsp1_rep	CDS	4506040	4506249	.	-	0	Parent=Os07t0185200-02
Chr07	irgsp1_rep	CDS	4505517	4505693	.	-	0	Parent=Os07t0185200-02
Chr07	irgsp1_rep	CDS	4505341	4505424	.	-	0	Parent=Os07t0185200-02
Chr07	irgsp1_rep	CDS	4504310	4504391	.	-	0	Parent=Os07t0185200-02
Chr07	irgsp1_rep	CDS	4504050	4504179	.	-	2	Parent=Os07t0185200-02
Chr07	irgsp1_rep	CDS	4503733	4503742	.	-	1	Parent=Os07t0185200-02
Chr07	irgsp1_rep	three_prime_UTR	4503371	4503732	.	-	.	Parent=Os07t0185200-02
Chr07	irgsp1_rep	mRNA	4509152	4513785	.	-	.	ID=Os07t0185300-01;Name=Os07t0185300-01;Locus_id=Os07g0185300;Note=Protein of unknown function YGGT family protein.;Transcript_evidence=AK071133 (DDBJ%2C Best hit);ORF_evidence=NP_194528.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Uncharacterised protein family Ycf19 (IPR003425);NIAS_FLcDNA=J023076B10;Expression=AK071133;TENOR=Os07t0185300-01;KEGG=Os07t0185300-01
Chr07	irgsp1_rep	five_prime_UTR	4513682	4513785	.	-	.	Parent=Os07t0185300-01
Chr07	irgsp1_rep	CDS	4513154	4513681	.	-	0	Parent=Os07t0185300-01
Chr07	irgsp1_rep	three_prime_UTR	4513136	4513153	.	-	.	Parent=Os07t0185300-01
Chr07	irgsp1_rep	three_prime_UTR	4509152	4509595	.	-	.	Parent=Os07t0185300-01
Chr07	irgsp1_rep	mRNA	4532354	4536461	.	+	.	ID=Os07t0185432-00;Name=Os07t0185432-00;Locus_id=Os07g0185432;Oryzabase Gene Symbol Synonym(s)=OsBIP116b;Note=Similar to Seed specific protein Bn15D14A.;Transcript_evidence=ab initio prediction;ORF_evidence=B6TVC9 (UniProt);InterPro=Xklp2 targeting protein (IPR009675);Oryzabase=11416;TENOR=Os07t0185432-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	4532354	4532761	.	+	0	Parent=Os07t0185432-00
Chr07	irgsp1_rep	CDS	4533203	4533285	.	+	0	Parent=Os07t0185432-00
Chr07	irgsp1_rep	CDS	4533538	4533634	.	+	1	Parent=Os07t0185432-00
Chr07	irgsp1_rep	CDS	4533723	4533794	.	+	0	Parent=Os07t0185432-00
Chr07	irgsp1_rep	CDS	4535450	4535560	.	+	0	Parent=Os07t0185432-00
Chr07	irgsp1_rep	CDS	4536192	4536461	.	+	0	Parent=Os07t0185432-00
Chr07	irgsp1_rep	mRNA	4536493	4536780	.	+	.	ID=Os07t0185500-01;Name=Os07t0185500-01;Locus_id=Os07g0185500;Note=Non-protein coding transcript.;Transcript_evidence=AK058768 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-001-E11;TENOR=Os07t0185500-01
Chr07	irgsp1_rep	exon	4536493	4536780	.	+	.	Parent=Os07t0185500-01
Chr07	irgsp1_rep	mRNA	4544924	4552953	.	+	.	ID=Os07t0185700-01;Name=Os07t0185700-01;Locus_id=Os07g0185700;Note=Conserved hypothetical protein.;Transcript_evidence=AK070572 (DDBJ%2C Best hit);ORF_evidence=B8B7W7 (UniProt);NIAS_FLcDNA=J023055P17;Expression=AK070572;TENOR=Os07t0185700-01;KEGG=Os07t0185700-01
Chr07	irgsp1_rep	five_prime_UTR	4544924	4544946	.	+	.	Parent=Os07t0185700-01
Chr07	irgsp1_rep	CDS	4544947	4545125	.	+	0	Parent=Os07t0185700-01
Chr07	irgsp1_rep	CDS	4545686	4545722	.	+	1	Parent=Os07t0185700-01
Chr07	irgsp1_rep	CDS	4545918	4546021	.	+	0	Parent=Os07t0185700-01
Chr07	irgsp1_rep	CDS	4546360	4546555	.	+	1	Parent=Os07t0185700-01
Chr07	irgsp1_rep	CDS	4547410	4547476	.	+	0	Parent=Os07t0185700-01
Chr07	irgsp1_rep	CDS	4547697	4547800	.	+	2	Parent=Os07t0185700-01
Chr07	irgsp1_rep	CDS	4548144	4548183	.	+	0	Parent=Os07t0185700-01
Chr07	irgsp1_rep	CDS	4548864	4548918	.	+	2	Parent=Os07t0185700-01
Chr07	irgsp1_rep	CDS	4549874	4550005	.	+	1	Parent=Os07t0185700-01
Chr07	irgsp1_rep	CDS	4550392	4550461	.	+	1	Parent=Os07t0185700-01
Chr07	irgsp1_rep	CDS	4550877	4550934	.	+	0	Parent=Os07t0185700-01
Chr07	irgsp1_rep	CDS	4551021	4551076	.	+	2	Parent=Os07t0185700-01
Chr07	irgsp1_rep	CDS	4551163	4551318	.	+	0	Parent=Os07t0185700-01
Chr07	irgsp1_rep	CDS	4551437	4551548	.	+	0	Parent=Os07t0185700-01
Chr07	irgsp1_rep	CDS	4551630	4551771	.	+	2	Parent=Os07t0185700-01
Chr07	irgsp1_rep	CDS	4551989	4552064	.	+	1	Parent=Os07t0185700-01
Chr07	irgsp1_rep	CDS	4552154	4552249	.	+	0	Parent=Os07t0185700-01
Chr07	irgsp1_rep	CDS	4552357	4552485	.	+	0	Parent=Os07t0185700-01
Chr07	irgsp1_rep	three_prime_UTR	4552486	4552953	.	+	.	Parent=Os07t0185700-01
Chr07	irgsp1_rep	mRNA	4557242	4559678	.	+	.	ID=Os07t0185800-01;Name=Os07t0185800-01;Locus_id=Os07g0185800;Note=Similar to C-Myc binding protein (Associate of Myc 1) (AMY-1).;Transcript_evidence=AK063035 (DDBJ%2C Best hit);ORF_evidence=NP_001149560.1 (RefSeq);NIAS_FLcDNA=001-110-C09;Expression=AK063035;TENOR=Os07t0185800-01;KEGG=Os07t0185800-01
Chr07	irgsp1_rep	five_prime_UTR	4557242	4557350	.	+	.	Parent=Os07t0185800-01
Chr07	irgsp1_rep	CDS	4557351	4557353	.	+	0	Parent=Os07t0185800-01
Chr07	irgsp1_rep	CDS	4558021	4558093	.	+	0	Parent=Os07t0185800-01
Chr07	irgsp1_rep	CDS	4558189	4558237	.	+	2	Parent=Os07t0185800-01
Chr07	irgsp1_rep	CDS	4558321	4558444	.	+	1	Parent=Os07t0185800-01
Chr07	irgsp1_rep	CDS	4559168	4559218	.	+	0	Parent=Os07t0185800-01
Chr07	irgsp1_rep	three_prime_UTR	4559219	4559678	.	+	.	Parent=Os07t0185800-01
Chr07	irgsp1_rep	mRNA	4567730	4568349	.	-	.	ID=Os07t0185900-01;Name=Os07t0185900-01;Locus_id=Os07g0185900;Note=Conserved hypothetical protein.;Transcript_evidence=AK070315 (DDBJ%2C Best hit);ORF_evidence=A2YIW6 (UniProt);NIAS_FLcDNA=J023050P21;Expression=AK070315;TENOR=Os07t0185900-01;KEGG=Os07t0185900-01
Chr07	irgsp1_rep	five_prime_UTR	4568137	4568349	.	-	.	Parent=Os07t0185900-01
Chr07	irgsp1_rep	CDS	4567894	4568136	.	-	0	Parent=Os07t0185900-01
Chr07	irgsp1_rep	three_prime_UTR	4567730	4567893	.	-	.	Parent=Os07t0185900-01
Chr07	irgsp1_rep	mRNA	4574319	4576229	.	-	.	ID=Os07t0186000-02;Name=Os07t0186000-02;Locus_id=Os07g0186000;RAP-DB Gene Symbol Synonym(s)=TRXH%2C trxh%2C Trx-H%2C OsTRXh1%2C OsTrxh1%2C Os1%2C OsTrx23%2C RPP13-1;RAP-DB Gene Name Synonym(s)=THIOREDOXIN H-TYPE%2C Thioredoxin H-type%2C Phloem sap 13 kDa protein 1%2C phloem protein13-1%2C h-type thioredoxin 1%2C thioredoxin h1;CGSNL Gene Symbol=TRXH;CGSNL Gene Name=THIOREDOXIN H-TYPE;Oryzabase Gene Symbol Synonym(s)=trxh%2C Trx-H%2C OsTRXh1%2C TRXh1%2C OsTrxh1%2C Os1%2C OsTrx23%2C RPP13-1;Oryzabase Gene Name Synonym(s)=Thioredoxin H-type%2C Phloem sap 13 kDa protein 1%2C phloem protein13-1%2C h-type thioredoxin 1%2C thioredoxin h1;Note=H-type thioredoxin%2C Regulation of the apoplastic reactive oxygen species%2C Stress response;Transcript_evidence=D21836,AK121423,AK059196;ORF_evidence=Q0D840;GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Thioredoxin (IPR005746),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766),Thioredoxin%2C conserved site (IPR017937);NIAS_FLcDNA=J023133N23, 001-024-A03;Manual Curation=December 10%2C 2015;Literature_PMID=22010108,7766047;Oryzabase=6472;Expression=AK121423;TENOR=Os07t0186000-02;KEGG=Os07t0186000-02
Chr07	irgsp1_rep	five_prime_UTR	4576137	4576229	.	-	.	Parent=Os07t0186000-02
Chr07	irgsp1_rep	CDS	4576047	4576136	.	-	0	Parent=Os07t0186000-02
Chr07	irgsp1_rep	CDS	4574824	4574946	.	-	0	Parent=Os07t0186000-02
Chr07	irgsp1_rep	CDS	4574587	4574742	.	-	0	Parent=Os07t0186000-02
Chr07	irgsp1_rep	three_prime_UTR	4574319	4574586	.	-	.	Parent=Os07t0186000-02
Chr07	irgsp1_rep	mRNA	4592997	4595609	.	+	.	ID=Os07t0186150-00;Name=Os07t0186150-00;Locus_id=Os07g0186150;Note=Hypothetical protein.;Transcript_evidence=tplb0028c09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0186150-00
Chr07	irgsp1_rep	five_prime_UTR	4592997	4595200	.	+	.	Parent=Os07t0186150-00
Chr07	irgsp1_rep	CDS	4595201	4595593	.	+	0	Parent=Os07t0186150-00
Chr07	irgsp1_rep	three_prime_UTR	4595594	4595609	.	+	.	Parent=Os07t0186150-00
Chr07	irgsp1_rep	mRNA	4593094	4595607	.	-	.	ID=Os07t0186200-01;Name=Os07t0186200-01;Locus_id=Os07g0186200;RAP-DB Gene Symbol Synonym(s)=SIK2%2C OsSIK2%2C YK14;RAP-DB Gene Name Synonym(s)=STRESS INDUCED PROTEIN KINASE 2;CGSNL Gene Symbol=SIK2;CGSNL Gene Name=STRESS INDUCED PROTEIN KINASE 2;Oryzabase Gene Symbol Synonym(s)=OsSIK2%2C YK14;Note=S-domain recepter-like kinase%2C Abiotic stress tolerance;Transcript_evidence=NM_001065605,EF560751 (TP309);ORF_evidence=Q7XI25,A5JS87;GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=S-receptor-like serine/threonine-protein kinase (IPR024171),Bulb-type lectin domain (IPR001480),S-locus glycoprotein (IPR000858),Apple-like (IPR003609),PAN-2 domain (IPR013227),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);Manual Curation=January 10%2C 2014;Literature_PMID=24143807;Oryzabase=15027;TENOR=Os07t0186200-00
Chr07	irgsp1_rep	CDS	4593094	4595607	.	-	0	Parent=Os07t0186200-01
Chr07	irgsp1_rep	mRNA	4606698	4614551	.	+	.	ID=Os07t0186400-01;Name=Os07t0186400-01;Locus_id=Os07g0186400;RAP-DB Gene Symbol Synonym(s)=OsSHL1;RAP-DB Gene Name Synonym(s)=SHORT LIFE 1;CGSNL Gene Symbol=SHL1;CGSNL Gene Name=SHORT LIFE 1;Oryzabase Gene Symbol Synonym(s)=OsSHL1;Oryzabase Gene Name Synonym(s)=SHL homolog 1;Note=Homolog of Arabidopsis SHL (SHORT LIFE)%2C BAH (Bromo adjacent homology) domain-containing protein%2C Mediation of genome-wide transcriptional repression;Transcript_evidence=AK101850;ORF_evidence=Q7XI22;GO=Molecular Function: Chromatin binding (GO:0003682);InterPro=Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Bromo adjacent homology (BAH) domain (IPR001025),Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C PHD-finger (IPR019787),Zinc finger%2C PHD-type%2C conserved site (IPR019786);NIAS_FLcDNA=J033069K07;Manual Curation=June 12%2C 2019;Literature_PMID=30082786;Oryzabase=22669;TENOR=Os07t0186400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	4606698	4606799	.	+	.	Parent=Os07t0186400-01
Chr07	irgsp1_rep	CDS	4606800	4606872	.	+	0	Parent=Os07t0186400-01
Chr07	irgsp1_rep	CDS	4609160	4609508	.	+	2	Parent=Os07t0186400-01
Chr07	irgsp1_rep	CDS	4611765	4611833	.	+	1	Parent=Os07t0186400-01
Chr07	irgsp1_rep	CDS	4613435	4613570	.	+	1	Parent=Os07t0186400-01
Chr07	irgsp1_rep	CDS	4614128	4614157	.	+	0	Parent=Os07t0186400-01
Chr07	irgsp1_rep	three_prime_UTR	4614158	4614551	.	+	.	Parent=Os07t0186400-01
Chr07	irgsp1_rep	mRNA	4618666	4622754	.	+	.	ID=Os07t0186500-01;Name=Os07t0186500-01;Locus_id=Os07g0186500;Note=NB-ARC domain containing protein.;Transcript_evidence=AK122165 (DDBJ%2C Best hit);ORF_evidence=B8B7X3 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J033147L06;Oryzabase=14968;Expression=AK122165;TENOR=Os07t0186500-01;KEGG=Os07t0186500-01
Chr07	irgsp1_rep	five_prime_UTR	4618666	4618794	.	+	.	Parent=Os07t0186500-01
Chr07	irgsp1_rep	five_prime_UTR	4619774	4619842	.	+	.	Parent=Os07t0186500-01
Chr07	irgsp1_rep	CDS	4619843	4622563	.	+	0	Parent=Os07t0186500-01
Chr07	irgsp1_rep	three_prime_UTR	4622564	4622754	.	+	.	Parent=Os07t0186500-01
Chr07	irgsp1_rep	mRNA	4642474	4644600	.	+	.	ID=Os07t0187000-01;Name=Os07t0187000-01;Locus_id=Os07g0187000;Note=Conserved hypothetical protein.;Transcript_evidence=AK072456 (DDBJ%2C Best hit);ORF_evidence=B9FVW8 (UniProt);NIAS_FLcDNA=J023117O13;TENOR=Os07t0187000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	4642474	4643859	.	+	.	Parent=Os07t0187000-01
Chr07	irgsp1_rep	CDS	4643860	4644531	.	+	0	Parent=Os07t0187000-01
Chr07	irgsp1_rep	three_prime_UTR	4644532	4644600	.	+	.	Parent=Os07t0187000-01
Chr07	irgsp1_rep	mRNA	4646182	4646753	.	-	.	ID=Os07t0187001-01;Name=Os07t0187001-01;Locus_id=Os07g0187001;Note=Conserved hypothetical protein.;Transcript_evidence=AK242014 (DDBJ%2C Best hit);ORF_evidence=NP_001175084.1 (RefSeq);NIAS_FLcDNA=J075109F05;TENOR=Os07t0187001-01;KEGG=Os07t0187001-01
Chr07	irgsp1_rep	five_prime_UTR	4646518	4646753	.	-	.	Parent=Os07t0187001-01
Chr07	irgsp1_rep	CDS	4646248	4646517	.	-	0	Parent=Os07t0187001-01
Chr07	irgsp1_rep	three_prime_UTR	4646182	4646247	.	-	.	Parent=Os07t0187001-01
Chr07	irgsp1_rep	mRNA	4655617	4659184	.	+	.	ID=Os07t0187200-01;Name=Os07t0187200-01;Locus_id=Os07g0187200;CGSNL Gene Symbol=D-LDH2;CGSNL Gene Name=D-LACTATE DEHYDROGENASE 2;Oryzabase Gene Symbol Synonym(s)=OsD-LDH2;Oryzabase Gene Name Synonym(s)=D-lactate dehydrogenase 2;Note=FAD linked oxidase%2C N-terminal domain containing protein.;Transcript_evidence=AK065328 (DDBJ%2C Best hit);ORF_evidence=NP_974692.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=FAD linked oxidase%2C N-terminal (IPR006094),FAD-binding%2C type 2 (IPR016166),FAD-linked oxidase%2C FAD-binding%2C subdomain 2 (IPR016168);NIAS_FLcDNA=J013001D19;Oryzabase=23745;Expression=AK065328;TENOR=Os07t0187200-01;KEGG=Os07t0187200-01 (EC:1.1.2.4)
Chr07	irgsp1_rep	five_prime_UTR	4655617	4655617	.	+	.	Parent=Os07t0187200-01
Chr07	irgsp1_rep	CDS	4655618	4655837	.	+	0	Parent=Os07t0187200-01
Chr07	irgsp1_rep	CDS	4656175	4656275	.	+	2	Parent=Os07t0187200-01
Chr07	irgsp1_rep	three_prime_UTR	4656276	4658073	.	+	.	Parent=Os07t0187200-01
Chr07	irgsp1_rep	three_prime_UTR	4658172	4658759	.	+	.	Parent=Os07t0187200-01
Chr07	irgsp1_rep	three_prime_UTR	4658855	4659184	.	+	.	Parent=Os07t0187200-01
Chr07	irgsp1_rep	mRNA	4652793	4660423	.	+	.	ID=Os07t0187200-02;Name=Os07t0187200-02;Locus_id=Os07g0187200;RAP-DB Gene Symbol Synonym(s)=OsD-LDH2;RAP-DB Gene Name Synonym(s)=D-lactate dehydrogenase 2;CGSNL Gene Symbol=D-LDH2;CGSNL Gene Name=D-LACTATE DEHYDROGENASE 2;Oryzabase Gene Symbol Synonym(s)=OsD-LDH2;Oryzabase Gene Name Synonym(s)=D-lactate dehydrogenase 2;Note=D-lactate dehydrogenase%2C Multiple abiotic stress tolerance (Salinity%2C Oxidative%2C Drought%2C etc.);Transcript_evidence=Inferred from literature;ORF_evidence=Q7XI14;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: FAD binding (GO:0071949);InterPro=FAD-binding%2C type PCMH%2C subdomain 1 (IPR016167),FAD-binding%2C type PCMH-like superfamily (IPR036318),FAD-binding%2C type PCMH%2C subdomain 2 (IPR016169),FAD-linked oxidase-like%2C C-terminal (IPR016164),Vanillyl-alcohol oxidase%2C C-terminal subdomain 2 (IPR016171),FAD-binding domain%2C PCMH-type (IPR016166),FAD linked oxidase%2C N-terminal (IPR006094),FAD-linked oxidase%2C C-terminal (IPR004113);Manual Curation=August 3%2C 2020;Literature_PMID=32732944;Oryzabase=23745
Chr07	irgsp1_rep	five_prime_UTR	4652793	4652924	.	+	.	Parent=Os07t0187200-02
Chr07	irgsp1_rep	CDS	4652925	4653003	.	+	0	Parent=Os07t0187200-02
Chr07	irgsp1_rep	CDS	4653826	4654184	.	+	2	Parent=Os07t0187200-02
Chr07	irgsp1_rep	CDS	4654609	4654710	.	+	0	Parent=Os07t0187200-02
Chr07	irgsp1_rep	CDS	4655167	4655214	.	+	0	Parent=Os07t0187200-02
Chr07	irgsp1_rep	CDS	4655376	4655446	.	+	0	Parent=Os07t0187200-02
Chr07	irgsp1_rep	CDS	4655719	4655837	.	+	1	Parent=Os07t0187200-02
Chr07	irgsp1_rep	CDS	4656175	4656270	.	+	2	Parent=Os07t0187200-02
Chr07	irgsp1_rep	CDS	4656375	4656484	.	+	2	Parent=Os07t0187200-02
Chr07	irgsp1_rep	CDS	4656582	4656662	.	+	0	Parent=Os07t0187200-02
Chr07	irgsp1_rep	CDS	4656972	4657072	.	+	0	Parent=Os07t0187200-02
Chr07	irgsp1_rep	CDS	4657511	4657619	.	+	1	Parent=Os07t0187200-02
Chr07	irgsp1_rep	CDS	4657819	4657924	.	+	0	Parent=Os07t0187200-02
Chr07	irgsp1_rep	CDS	4657988	4658073	.	+	2	Parent=Os07t0187200-02
Chr07	irgsp1_rep	CDS	4658172	4658297	.	+	0	Parent=Os07t0187200-02
Chr07	irgsp1_rep	CDS	4658664	4658750	.	+	0	Parent=Os07t0187200-02
Chr07	irgsp1_rep	three_prime_UTR	4658751	4658759	.	+	.	Parent=Os07t0187200-02
Chr07	irgsp1_rep	three_prime_UTR	4658855	4660423	.	+	.	Parent=Os07t0187200-02
Chr07	irgsp1_rep	mRNA	4659521	4662743	.	-	.	ID=Os07t0187300-01;Name=Os07t0187300-01;Locus_id=Os07g0187300;Oryzabase Gene Symbol Synonym(s)=OsRZ2;Oryzabase Gene Name Synonym(s)=zinc finger-containing glycine-rich RNA-binding protein 2;Note=Similar to Glycine-rich RNA-binding protein 7 (Fragment).;Transcript_evidence=AK103069 (DDBJ%2C Best hit);ORF_evidence=A6N168 (UniProt);NIAS_FLcDNA=J033117P16;Oryzabase=13468;TENOR=Os07t0187300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	4662649	4662743	.	-	.	Parent=Os07t0187300-01
Chr07	irgsp1_rep	five_prime_UTR	4662375	4662537	.	-	.	Parent=Os07t0187300-01
Chr07	irgsp1_rep	five_prime_UTR	4660498	4660654	.	-	.	Parent=Os07t0187300-01
Chr07	irgsp1_rep	CDS	4659733	4660497	.	-	0	Parent=Os07t0187300-01
Chr07	irgsp1_rep	three_prime_UTR	4659521	4659732	.	-	.	Parent=Os07t0187300-01
Chr07	irgsp1_rep	mRNA	4659450	4660447	.	-	.	ID=Os07t0187300-02;Name=Os07t0187300-02;Locus_id=Os07g0187300;Oryzabase Gene Symbol Synonym(s)=OsRZ2;Oryzabase Gene Name Synonym(s)=zinc finger-containing glycine-rich RNA-binding protein 2;Note=Similar to Glycine-rich RNA-binding protein 7 (Fragment).;Transcript_evidence=AK059768 (DDBJ%2C Best hit);ORF_evidence=A6N168 (UniProt);NIAS_FLcDNA=006-203-H01;Oryzabase=13468;TENOR=Os07t0187300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	4660414	4660447	.	-	.	Parent=Os07t0187300-02
Chr07	irgsp1_rep	CDS	4659733	4660413	.	-	0	Parent=Os07t0187300-02
Chr07	irgsp1_rep	three_prime_UTR	4659450	4659732	.	-	.	Parent=Os07t0187300-02
Chr07	irgsp1_rep	mRNA	4663426	4667478	.	-	.	ID=Os07t0187400-00;Name=Os07t0187400-00;Locus_id=Os07g0187400;Note=ATPase%2C AAA-type%2C core domain containing protein.;Transcript_evidence=AK360937 (DDBJ);ORF_evidence=NP_566373.2 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959);TENOR=Os07t0187400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	4667234	4667478	.	-	.	Parent=Os07t0187400-00
Chr07	irgsp1_rep	CDS	4666796	4667233	.	-	0	Parent=Os07t0187400-00
Chr07	irgsp1_rep	CDS	4666375	4666589	.	-	0	Parent=Os07t0187400-00
Chr07	irgsp1_rep	CDS	4666059	4666209	.	-	1	Parent=Os07t0187400-00
Chr07	irgsp1_rep	CDS	4665745	4665936	.	-	0	Parent=Os07t0187400-00
Chr07	irgsp1_rep	CDS	4665437	4665599	.	-	0	Parent=Os07t0187400-00
Chr07	irgsp1_rep	CDS	4665005	4665303	.	-	2	Parent=Os07t0187400-00
Chr07	irgsp1_rep	CDS	4664345	4664521	.	-	0	Parent=Os07t0187400-00
Chr07	irgsp1_rep	CDS	4664090	4664254	.	-	0	Parent=Os07t0187400-00
Chr07	irgsp1_rep	CDS	4663626	4663925	.	-	0	Parent=Os07t0187400-00
Chr07	irgsp1_rep	three_prime_UTR	4663426	4663625	.	-	.	Parent=Os07t0187400-00
Chr07	irgsp1_rep	mRNA	4682480	4687646	.	+	.	ID=Os07t0187700-01;Name=Os07t0187700-01;Locus_id=Os07g0187700;RAP-DB Gene Symbol Synonym(s)=PHF1%2C OsPHF1%2C OsWD40-137%2C OsSEC12;RAP-DB Gene Name Synonym(s)=PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR 1%2C PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR1%2C SEC12 ortholog;CGSNL Gene Symbol=PHF1;CGSNL Gene Name=PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR 1;Oryzabase Gene Symbol Synonym(s)=OsPHF1%2C OsWD40-137%2C OsSEC12;Oryzabase Gene Name Synonym(s)=PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR1%2C SEC12 ortholog%2C Phosphate transporter facilitator 1;Note=WD40 protein%2C Regulation of the plasma membrane localization of phosphate transporters%2C Phosphate uptake and translocation;Transcript_evidence=AK111777;ORF_evidence=Q6Z4F3;GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat (IPR001680);NIAS_FLcDNA=J023077D02;Manual Curation=July 15%2C 2015;Literature_PMID=21753117,22429805,25724641;Oryzabase=9624;Expression=AK111777;TENOR=Os07t0187700-01;KEGG=Os07t0187700-01
Chr07	irgsp1_rep	five_prime_UTR	4682480	4682690	.	+	.	Parent=Os07t0187700-01
Chr07	irgsp1_rep	CDS	4682691	4682864	.	+	0	Parent=Os07t0187700-01
Chr07	irgsp1_rep	CDS	4682997	4683097	.	+	0	Parent=Os07t0187700-01
Chr07	irgsp1_rep	CDS	4683820	4683952	.	+	1	Parent=Os07t0187700-01
Chr07	irgsp1_rep	CDS	4684319	4684410	.	+	0	Parent=Os07t0187700-01
Chr07	irgsp1_rep	CDS	4684705	4684804	.	+	1	Parent=Os07t0187700-01
Chr07	irgsp1_rep	CDS	4684892	4684964	.	+	0	Parent=Os07t0187700-01
Chr07	irgsp1_rep	CDS	4685046	4685166	.	+	2	Parent=Os07t0187700-01
Chr07	irgsp1_rep	CDS	4685626	4685745	.	+	1	Parent=Os07t0187700-01
Chr07	irgsp1_rep	CDS	4686909	4686979	.	+	1	Parent=Os07t0187700-01
Chr07	irgsp1_rep	CDS	4687065	4687243	.	+	2	Parent=Os07t0187700-01
Chr07	irgsp1_rep	three_prime_UTR	4687244	4687646	.	+	.	Parent=Os07t0187700-01
Chr07	irgsp1_rep	mRNA	4697237	4699531	.	+	.	ID=Os07t0187900-01;Name=Os07t0187900-01;Locus_id=Os07g0187900;Note=Similar to nitrate and chloride transporter.;Transcript_evidence=AK062594 (DDBJ%2C Best hit);ORF_evidence=NP_001152028.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Nodulin-like (IPR010658),Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=001-101-A06;TENOR=Os07t0187900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	4697237	4697273	.	+	.	Parent=Os07t0187900-01
Chr07	irgsp1_rep	CDS	4697274	4699148	.	+	0	Parent=Os07t0187900-01
Chr07	irgsp1_rep	three_prime_UTR	4699149	4699531	.	+	.	Parent=Os07t0187900-01
Chr07	irgsp1_rep	mRNA	4702978	4712517	.	-	.	ID=Os07t0188000-01;Name=Os07t0188000-01;Locus_id=Os07g0188000;CGSNL Gene Symbol=AGO14;CGSNL Gene Name=ARGONAUTE 14;Oryzabase Gene Symbol Synonym(s)=OsAGO14;Oryzabase Gene Name Synonym(s)=Protein argonaute 14;Note=Similar to Argonaute 4 protein.;Transcript_evidence=AK100285 (DDBJ%2C Best hit);ORF_evidence=Q6Z4F1 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515);InterPro=Argonaute/Dicer protein%2C PAZ (IPR003100),Stem cell self-renewal protein Piwi (IPR003165),Ribonuclease H-like (IPR012337),Domain of unknown function DUF1785 (IPR014811);NIAS_FLcDNA=J023075D23;Oryzabase=8263;Expression=AK100285;TENOR=Os07t0188000-01;KEGG=Os07t0188000-01
Chr07	irgsp1_rep	five_prime_UTR	4712432	4712517	.	-	.	Parent=Os07t0188000-01
Chr07	irgsp1_rep	CDS	4711754	4712431	.	-	0	Parent=Os07t0188000-01
Chr07	irgsp1_rep	CDS	4709409	4709605	.	-	0	Parent=Os07t0188000-01
Chr07	irgsp1_rep	CDS	4708949	4709089	.	-	1	Parent=Os07t0188000-01
Chr07	irgsp1_rep	CDS	4708728	4708858	.	-	1	Parent=Os07t0188000-01
Chr07	irgsp1_rep	CDS	4708091	4708218	.	-	2	Parent=Os07t0188000-01
Chr07	irgsp1_rep	CDS	4707901	4708004	.	-	0	Parent=Os07t0188000-01
Chr07	irgsp1_rep	CDS	4707669	4707801	.	-	1	Parent=Os07t0188000-01
Chr07	irgsp1_rep	CDS	4707481	4707597	.	-	0	Parent=Os07t0188000-01
Chr07	irgsp1_rep	CDS	4706676	4706783	.	-	0	Parent=Os07t0188000-01
Chr07	irgsp1_rep	CDS	4706523	4706594	.	-	0	Parent=Os07t0188000-01
Chr07	irgsp1_rep	CDS	4706098	4706217	.	-	0	Parent=Os07t0188000-01
Chr07	irgsp1_rep	CDS	4705879	4706017	.	-	0	Parent=Os07t0188000-01
Chr07	irgsp1_rep	CDS	4705672	4705796	.	-	2	Parent=Os07t0188000-01
Chr07	irgsp1_rep	CDS	4705434	4705562	.	-	0	Parent=Os07t0188000-01
Chr07	irgsp1_rep	CDS	4705113	4705294	.	-	0	Parent=Os07t0188000-01
Chr07	irgsp1_rep	CDS	4704949	4705014	.	-	1	Parent=Os07t0188000-01
Chr07	irgsp1_rep	CDS	4704750	4704813	.	-	1	Parent=Os07t0188000-01
Chr07	irgsp1_rep	CDS	4704530	4704665	.	-	0	Parent=Os07t0188000-01
Chr07	irgsp1_rep	CDS	4704262	4704335	.	-	2	Parent=Os07t0188000-01
Chr07	irgsp1_rep	CDS	4704051	4704145	.	-	0	Parent=Os07t0188000-01
Chr07	irgsp1_rep	CDS	4703931	4703962	.	-	1	Parent=Os07t0188000-01
Chr07	irgsp1_rep	CDS	4703146	4703333	.	-	2	Parent=Os07t0188000-01
Chr07	irgsp1_rep	three_prime_UTR	4702978	4703145	.	-	.	Parent=Os07t0188000-01
Chr07	irgsp1_rep	mRNA	4703148	4704371	.	+	.	ID=Os07t0188050-00;Name=Os07t0188050-00;Locus_id=Os07g0188050;Note=Hypothetical protein.;Transcript_evidence=BT016774 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0188050-00
Chr07	irgsp1_rep	five_prime_UTR	4703148	4703300	.	+	.	Parent=Os07t0188050-00
Chr07	irgsp1_rep	CDS	4703301	4703356	.	+	0	Parent=Os07t0188050-00
Chr07	irgsp1_rep	CDS	4704043	4704144	.	+	1	Parent=Os07t0188050-00
Chr07	irgsp1_rep	CDS	4704261	4704371	.	+	1	Parent=Os07t0188050-00
Chr07	irgsp1_rep	mRNA	4719660	4722675	.	+	.	ID=Os07t0188233-01;Name=Os07t0188233-01;Locus_id=Os07g0188233;Note=Conserved hypothetical protein.;Transcript_evidence=AK288863 (DDBJ%2C Best hit);ORF_evidence=Q6Z4E9 (UniProt);NIAS_FLcDNA=J090077I20;TENOR=Os07t0188233-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	4719660	4721766	.	+	.	Parent=Os07t0188233-01
Chr07	irgsp1_rep	CDS	4721767	4721946	.	+	0	Parent=Os07t0188233-01
Chr07	irgsp1_rep	three_prime_UTR	4721947	4722675	.	+	.	Parent=Os07t0188233-01
Chr07	irgsp1_rep	mRNA	4725288	4725583	.	-	.	ID=Os07t0188249-00;Name=Os07t0188249-00;Locus_id=Os07g0188249;Note=Non-protein coding transcript.;Transcript_evidence=EU943792 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0188249-00
Chr07	irgsp1_rep	exon	4725288	4725583	.	-	.	Parent=Os07t0188249-00
Chr07	irgsp1_rep	mRNA	4725715	4726845	.	+	.	ID=Os07t0188266-00;Name=Os07t0188266-00;Locus_id=Os07g0188266;Oryzabase Gene Symbol Synonym(s)=OsFKBP16-4;Oryzabase Gene Name Synonym(s)=FK506 binding protein 16-4;Note=Spectrin repeat containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6Z4E8 (UniProt);InterPro=YbaK/aminoacyl-tRNA synthetase-associated domain (IPR007214);Oryzabase=10031;TENOR=Os07t0188266-00;KEGG=Os07t0188266-00
Chr07	irgsp1_rep	CDS	4725715	4726224	.	+	0	Parent=Os07t0188266-00
Chr07	irgsp1_rep	CDS	4726360	4726845	.	+	0	Parent=Os07t0188266-00
Chr07	irgsp1_rep	mRNA	4729466	4733459	.	+	.	ID=Os07t0188700-01;Name=Os07t0188700-01;Locus_id=Os07g0188700;Note=Similar to EXO.;Transcript_evidence=AK073755 (DDBJ%2C Best hit);ORF_evidence=Q5DMX2 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);NIAS_FLcDNA=J033066N03;Expression=AK073755;TENOR=Os07t0188700-01;KEGG=Os07t0188700-01 (EC:2.4.1.224%2C EC:2.4.1.225)
Chr07	irgsp1_rep	five_prime_UTR	4729466	4729705	.	+	.	Parent=Os07t0188700-01
Chr07	irgsp1_rep	CDS	4729706	4730269	.	+	0	Parent=Os07t0188700-01
Chr07	irgsp1_rep	CDS	4731444	4731667	.	+	0	Parent=Os07t0188700-01
Chr07	irgsp1_rep	CDS	4731809	4732157	.	+	1	Parent=Os07t0188700-01
Chr07	irgsp1_rep	CDS	4732496	4733179	.	+	0	Parent=Os07t0188700-01
Chr07	irgsp1_rep	three_prime_UTR	4733180	4733459	.	+	.	Parent=Os07t0188700-01
Chr07	irgsp1_rep	mRNA	4729469	4732383	.	+	.	ID=Os07t0188700-02;Name=Os07t0188700-02;Locus_id=Os07g0188700;Note=Similar to oxidoreductase.;Transcript_evidence=AK107609 (DDBJ%2C Best hit);ORF_evidence=NP_187419.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);NIAS_FLcDNA=002-131-C04;Expression=AK107609;TENOR=Os07t0188700-02;KEGG=Os07t0188700-02
Chr07	irgsp1_rep	five_prime_UTR	4729469	4729705	.	+	.	Parent=Os07t0188700-02
Chr07	irgsp1_rep	CDS	4729706	4730269	.	+	0	Parent=Os07t0188700-02
Chr07	irgsp1_rep	CDS	4731444	4731667	.	+	0	Parent=Os07t0188700-02
Chr07	irgsp1_rep	CDS	4731809	4732274	.	+	1	Parent=Os07t0188700-02
Chr07	irgsp1_rep	three_prime_UTR	4732275	4732383	.	+	.	Parent=Os07t0188700-02
Chr07	irgsp1_rep	mRNA	4729587	4733531	.	+	.	ID=Os07t0188700-03;Name=Os07t0188700-03;Locus_id=Os07g0188700;Note=Hypothetical conserved gene.;Transcript_evidence=AK063957 (DDBJ%2C Best hit);ORF_evidence=Q5DMX2 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);NIAS_FLcDNA=001-123-G02;Expression=AK063957;TENOR=Os07t0188700-03;KEGG=Os07t0188700-03
Chr07	irgsp1_rep	five_prime_UTR	4729587	4729705	.	+	.	Parent=Os07t0188700-03
Chr07	irgsp1_rep	CDS	4729706	4730269	.	+	0	Parent=Os07t0188700-03
Chr07	irgsp1_rep	CDS	4731444	4731571	.	+	0	Parent=Os07t0188700-03
Chr07	irgsp1_rep	CDS	4732873	4733179	.	+	1	Parent=Os07t0188700-03
Chr07	irgsp1_rep	three_prime_UTR	4733180	4733531	.	+	.	Parent=Os07t0188700-03
Chr07	irgsp1_rep	mRNA	4731806	4733152	.	-	.	ID=Os07t0188750-00;Name=Os07t0188750-00;Locus_id=Os07g0188750;Note=Hypothetical protein.;Transcript_evidence=tplb0040n23 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0188750-00
Chr07	irgsp1_rep	five_prime_UTR	4732882	4733152	.	-	.	Parent=Os07t0188750-00
Chr07	irgsp1_rep	CDS	4732522	4732881	.	-	0	Parent=Os07t0188750-00
Chr07	irgsp1_rep	three_prime_UTR	4732471	4732521	.	-	.	Parent=Os07t0188750-00
Chr07	irgsp1_rep	three_prime_UTR	4731806	4732139	.	-	.	Parent=Os07t0188750-00
Chr07	irgsp1_rep	mRNA	4734626	4741454	.	+	.	ID=Os07t0188800-01;Name=Os07t0188800-01;Locus_id=Os07g0188800;CGSNL Gene Symbol=ALDH6B2;CGSNL Gene Name=ALDEHYDE DEHYDROGENASE 6B2;Oryzabase Gene Symbol Synonym(s)=OsALDH6B2;Oryzabase Gene Name Synonym(s)=Aldehyde dehydrogenase 6B2%2C Methylmalonate-semialdehyde dehydrogenase;Note=Similar to Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27).;Transcript_evidence=AK121280 (DDBJ%2C Best hit);ORF_evidence=O49218 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: methylmalonate-semialdehyde dehydrogenase (acylating) activity (GO:0004491),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620);InterPro=Methylmalonate-semialdehyde dehydrogenase (IPR010061),Aldehyde dehydrogenase domain (IPR015590),Aldehyde dehydrogenase%2C conserved site (IPR016160),Aldehyde/histidinol dehydrogenase (IPR016161),Aldehyde dehydrogenase%2C N-terminal (IPR016162),Aldehyde dehydrogenase%2C C-terminal (IPR016163);NIAS_FLcDNA=J023108H13;Oryzabase=22115;Expression=AK121280;TENOR=Os07t0188800-01;KEGG=Os07t0188800-01 (EC:1.2.1.27)
Chr07	irgsp1_rep	five_prime_UTR	4734626	4734732	.	+	.	Parent=Os07t0188800-01
Chr07	irgsp1_rep	CDS	4734733	4734760	.	+	0	Parent=Os07t0188800-01
Chr07	irgsp1_rep	CDS	4734846	4734931	.	+	2	Parent=Os07t0188800-01
Chr07	irgsp1_rep	CDS	4735023	4735097	.	+	0	Parent=Os07t0188800-01
Chr07	irgsp1_rep	CDS	4735187	4735348	.	+	0	Parent=Os07t0188800-01
Chr07	irgsp1_rep	CDS	4735472	4735550	.	+	0	Parent=Os07t0188800-01
Chr07	irgsp1_rep	CDS	4735770	4735924	.	+	2	Parent=Os07t0188800-01
Chr07	irgsp1_rep	CDS	4736073	4736136	.	+	0	Parent=Os07t0188800-01
Chr07	irgsp1_rep	CDS	4736776	4736855	.	+	2	Parent=Os07t0188800-01
Chr07	irgsp1_rep	CDS	4737214	4737279	.	+	0	Parent=Os07t0188800-01
Chr07	irgsp1_rep	CDS	4737780	4737830	.	+	0	Parent=Os07t0188800-01
Chr07	irgsp1_rep	CDS	4737935	4738086	.	+	0	Parent=Os07t0188800-01
Chr07	irgsp1_rep	CDS	4738171	4738261	.	+	1	Parent=Os07t0188800-01
Chr07	irgsp1_rep	CDS	4739004	4739084	.	+	0	Parent=Os07t0188800-01
Chr07	irgsp1_rep	CDS	4739178	4739255	.	+	0	Parent=Os07t0188800-01
Chr07	irgsp1_rep	CDS	4740163	4740198	.	+	0	Parent=Os07t0188800-01
Chr07	irgsp1_rep	CDS	4740273	4740316	.	+	0	Parent=Os07t0188800-01
Chr07	irgsp1_rep	CDS	4740415	4740493	.	+	1	Parent=Os07t0188800-01
Chr07	irgsp1_rep	CDS	4740883	4740973	.	+	0	Parent=Os07t0188800-01
Chr07	irgsp1_rep	CDS	4741116	4741222	.	+	2	Parent=Os07t0188800-01
Chr07	irgsp1_rep	three_prime_UTR	4741223	4741454	.	+	.	Parent=Os07t0188800-01
Chr07	irgsp1_rep	mRNA	4736806	4741424	.	+	.	ID=Os07t0188800-02;Name=Os07t0188800-02;Locus_id=Os07g0188800;CGSNL Gene Symbol=ALDH6B2;CGSNL Gene Name=ALDEHYDE DEHYDROGENASE 6B2;Oryzabase Gene Symbol Synonym(s)=OsALDH6B2;Oryzabase Gene Name Synonym(s)=Aldehyde dehydrogenase 6B2%2C Methylmalonate-semialdehyde dehydrogenase;Note=Similar to Methylmalonate semi-aldehyde dehydrogenase.;Transcript_evidence=AK065917 (DDBJ%2C Best hit);ORF_evidence=O49218 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: methylmalonate-semialdehyde dehydrogenase (acylating) activity (GO:0004491),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620);InterPro=Methylmalonate-semialdehyde dehydrogenase (IPR010061),Aldehyde dehydrogenase domain (IPR015590),Aldehyde dehydrogenase%2C conserved site (IPR016160),Aldehyde/histidinol dehydrogenase (IPR016161),Aldehyde dehydrogenase%2C N-terminal (IPR016162),Aldehyde dehydrogenase%2C C-terminal (IPR016163);NIAS_FLcDNA=J013045P03;Oryzabase=22115;Expression=AK065917;TENOR=Os07t0188800-02;KEGG=Os07t0188800-02 (EC:1.2.1.27)
Chr07	irgsp1_rep	five_prime_UTR	4736806	4736807	.	+	.	Parent=Os07t0188800-02
Chr07	irgsp1_rep	CDS	4736808	4736855	.	+	0	Parent=Os07t0188800-02
Chr07	irgsp1_rep	CDS	4737214	4737279	.	+	0	Parent=Os07t0188800-02
Chr07	irgsp1_rep	CDS	4737780	4737830	.	+	0	Parent=Os07t0188800-02
Chr07	irgsp1_rep	CDS	4737935	4738086	.	+	0	Parent=Os07t0188800-02
Chr07	irgsp1_rep	CDS	4738171	4738261	.	+	1	Parent=Os07t0188800-02
Chr07	irgsp1_rep	CDS	4739004	4739084	.	+	0	Parent=Os07t0188800-02
Chr07	irgsp1_rep	CDS	4739178	4739255	.	+	0	Parent=Os07t0188800-02
Chr07	irgsp1_rep	CDS	4740163	4740198	.	+	0	Parent=Os07t0188800-02
Chr07	irgsp1_rep	CDS	4740273	4740316	.	+	0	Parent=Os07t0188800-02
Chr07	irgsp1_rep	CDS	4740415	4740493	.	+	1	Parent=Os07t0188800-02
Chr07	irgsp1_rep	CDS	4740883	4740973	.	+	0	Parent=Os07t0188800-02
Chr07	irgsp1_rep	CDS	4741116	4741222	.	+	2	Parent=Os07t0188800-02
Chr07	irgsp1_rep	three_prime_UTR	4741223	4741424	.	+	.	Parent=Os07t0188800-02
Chr07	irgsp1_rep	mRNA	4758553	4760320	.	-	.	ID=Os07t0189400-01;Name=Os07t0189400-01;Locus_id=Os07g0189400;Note=Conserved hypothetical protein.;Transcript_evidence=AK106788 (DDBJ%2C Best hit);ORF_evidence=B9FVX9 (UniProt);NIAS_FLcDNA=002-116-A03;Oryzabase=17451;TENOR=Os07t0189400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	4760319	4760320	.	-	.	Parent=Os07t0189400-01
Chr07	irgsp1_rep	CDS	4759530	4760318	.	-	0	Parent=Os07t0189400-01
Chr07	irgsp1_rep	three_prime_UTR	4758553	4759529	.	-	.	Parent=Os07t0189400-01
Chr07	irgsp1_rep	mRNA	4773059	4774386	.	+	.	ID=Os07t0189700-01;Name=Os07t0189700-01;Locus_id=Os07g0189700;Note=Similar to JHL07K02.7 protein.;Transcript_evidence=AK099833 (DDBJ%2C Best hit);ORF_evidence=E6NU07 (UniProt);NIAS_FLcDNA=J013106C07;Expression=AK099833;TENOR=Os07t0189700-01;KEGG=Os07t0189700-01
Chr07	irgsp1_rep	five_prime_UTR	4773059	4773109	.	+	.	Parent=Os07t0189700-01
Chr07	irgsp1_rep	CDS	4773110	4773560	.	+	0	Parent=Os07t0189700-01
Chr07	irgsp1_rep	CDS	4774021	4774247	.	+	2	Parent=Os07t0189700-01
Chr07	irgsp1_rep	three_prime_UTR	4774248	4774386	.	+	.	Parent=Os07t0189700-01
Chr07	irgsp1_rep	mRNA	4774734	4776611	.	-	.	ID=Os07t0189800-01;Name=Os07t0189800-01;Locus_id=Os07g0189800;Note=Similar to JHL07K02.7 protein.;Transcript_evidence=AK071758 (DDBJ%2C Best hit);ORF_evidence=E6NU07 (UniProt);NIAS_FLcDNA=J023112J01;Expression=AK071758;TENOR=Os07t0189800-01;KEGG=Os07t0189800-01
Chr07	irgsp1_rep	five_prime_UTR	4776540	4776611	.	-	.	Parent=Os07t0189800-01
Chr07	irgsp1_rep	CDS	4776062	4776539	.	-	0	Parent=Os07t0189800-01
Chr07	irgsp1_rep	CDS	4775259	4775461	.	-	2	Parent=Os07t0189800-01
Chr07	irgsp1_rep	three_prime_UTR	4774734	4775258	.	-	.	Parent=Os07t0189800-01
Chr07	irgsp1_rep	mRNA	4821207	4824665	.	+	.	ID=Os07t0190000-01;Name=Os07t0190000-01;Locus_id=Os07g0190000;CGSNL Gene Symbol=DXS3;CGSNL Gene Name=1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 3;Oryzabase Gene Symbol Synonym(s)=OsDXS%2C OsDXS3%2C dxs3%2C DXS2%2C OsDXS2;Oryzabase Gene Name Synonym(s)=1-Deoxy-D-xylulose 5-phosphate synthase 3%2C DXP synthase 3;Note=Similar to 1-deoxy-D-xylulose 5-phosphate synthase 2 precursor.;Transcript_evidence=AK100909 (DDBJ%2C Best hit);ORF_evidence=A4ZYX4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: terpenoid biosynthetic process (GO:0016114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: 1-deoxy-D-xylulose-5-phosphate synthase activity (GO:0008661),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C disulfide as acceptor (GO:0016624);InterPro=Dehydrogenase%2C E1 component (IPR001017),Transketolase%2C N-terminal (IPR005474),Transketolase-like%2C pyrimidine-binding domain (IPR005475),Transketolase%2C C-terminal (IPR005476),Deoxyxylulose-5-phosphate synthase (IPR005477),Transketolase%2C C-terminal/Pyruvate-ferredoxin oxidoreductase%2C domain II (IPR009014),Transketolase-like%2C C-terminal (IPR015941),Transketolase binding site (IPR020826);NIAS_FLcDNA=J023132G24;Oryzabase=14689;Expression=AK100909;TENOR=Os07t0190000-01;KEGG=Os07t0190000-01 (EC:2.2.1.7)
Chr07	irgsp1_rep	five_prime_UTR	4821207	4821393	.	+	.	Parent=Os07t0190000-01
Chr07	irgsp1_rep	CDS	4821394	4821471	.	+	0	Parent=Os07t0190000-01
Chr07	irgsp1_rep	CDS	4821574	4823205	.	+	0	Parent=Os07t0190000-01
Chr07	irgsp1_rep	CDS	4823315	4823599	.	+	0	Parent=Os07t0190000-01
Chr07	irgsp1_rep	CDS	4823979	4824125	.	+	0	Parent=Os07t0190000-01
Chr07	irgsp1_rep	three_prime_UTR	4824126	4824665	.	+	.	Parent=Os07t0190000-01
Chr07	irgsp1_rep	mRNA	4833925	4834809	.	+	.	ID=Os07t0190150-00;Name=Os07t0190150-00;Locus_id=Os07g0190150;Note=Similar to Adenylate isopentenyltransferase.;Transcript_evidence=AB239803 (DDBJ%2C Best hit);ORF_evidence=Q33CD3 (UniProt);GO=Biological Process: tRNA processing (GO:0008033),Molecular Function: ATP binding (GO:0005524);InterPro=tRNA isopentenyltransferase (IPR002627);TENOR=Os07t0190150-00;KEGG=Os07t0190150-00
Chr07	irgsp1_rep	CDS	4833925	4834632	.	+	0	Parent=Os07t0190150-00
Chr07	irgsp1_rep	three_prime_UTR	4834633	4834809	.	+	.	Parent=Os07t0190150-00
Chr07	irgsp1_rep	mRNA	4863214	4864110	.	+	.	ID=Os07t0190400-00;Name=Os07t0190400-00;Locus_id=Os07g0190400;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001059087.1 (RefSeq);TENOR=Os07t0190400-00;KEGG=Os07t0190400-00
Chr07	irgsp1_rep	CDS	4863214	4863331	.	+	0	Parent=Os07t0190400-00
Chr07	irgsp1_rep	CDS	4863509	4864110	.	+	2	Parent=Os07t0190400-00
Chr07	irgsp1_rep	mRNA	4868011	4877912	.	-	.	ID=Os07t0190600-01;Name=Os07t0190600-01;Locus_id=Os07g0190600;Note=Domain of unknown function DUF223 domain containing protein.;Transcript_evidence=AK070975 (DDBJ%2C Best hit);ORF_evidence=B9FVY4 (UniProt);InterPro=Domain of unknown function DUF223 (IPR003871),Nucleic acid-binding%2C OB-fold (IPR012340),Replication factor A%2C C-terminal (IPR013955),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=J023073F15;Oryzabase=20473;TENOR=Os07t0190600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	4877818	4877912	.	-	.	Parent=Os07t0190600-01
Chr07	irgsp1_rep	five_prime_UTR	4876938	4877022	.	-	.	Parent=Os07t0190600-01
Chr07	irgsp1_rep	five_prime_UTR	4876691	4876768	.	-	.	Parent=Os07t0190600-01
Chr07	irgsp1_rep	five_prime_UTR	4876551	4876604	.	-	.	Parent=Os07t0190600-01
Chr07	irgsp1_rep	five_prime_UTR	4876090	4876236	.	-	.	Parent=Os07t0190600-01
Chr07	irgsp1_rep	five_prime_UTR	4874836	4874946	.	-	.	Parent=Os07t0190600-01
Chr07	irgsp1_rep	five_prime_UTR	4873979	4874044	.	-	.	Parent=Os07t0190600-01
Chr07	irgsp1_rep	five_prime_UTR	4870873	4870878	.	-	.	Parent=Os07t0190600-01
Chr07	irgsp1_rep	CDS	4870729	4870872	.	-	0	Parent=Os07t0190600-01
Chr07	irgsp1_rep	CDS	4870360	4870636	.	-	0	Parent=Os07t0190600-01
Chr07	irgsp1_rep	CDS	4870162	4870258	.	-	2	Parent=Os07t0190600-01
Chr07	irgsp1_rep	CDS	4869945	4870078	.	-	1	Parent=Os07t0190600-01
Chr07	irgsp1_rep	CDS	4869766	4869847	.	-	2	Parent=Os07t0190600-01
Chr07	irgsp1_rep	CDS	4869551	4869680	.	-	1	Parent=Os07t0190600-01
Chr07	irgsp1_rep	CDS	4869310	4869467	.	-	0	Parent=Os07t0190600-01
Chr07	irgsp1_rep	CDS	4868692	4869225	.	-	1	Parent=Os07t0190600-01
Chr07	irgsp1_rep	CDS	4868474	4868542	.	-	1	Parent=Os07t0190600-01
Chr07	irgsp1_rep	CDS	4868357	4868366	.	-	1	Parent=Os07t0190600-01
Chr07	irgsp1_rep	three_prime_UTR	4868011	4868356	.	-	.	Parent=Os07t0190600-01
Chr07	irgsp1_rep	mRNA	4878345	4880263	.	-	.	ID=Os07t0190650-00;Name=Os07t0190650-00;Locus_id=Os07g0190650;Oryzabase Gene Symbol Synonym(s)=OsNRT1.5%2C NRT1.5;Oryzabase Gene Name Synonym(s)=nitrate transporter 1.5;Note=Similar to predicted protein.;Transcript_evidence=ab initio prediction;ORF_evidence=E0X1U8 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);Oryzabase=23759;TENOR=Os07t0190650-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	4879883	4880263	.	-	0	Parent=Os07t0190650-00
Chr07	irgsp1_rep	CDS	4878345	4879820	.	-	0	Parent=Os07t0190650-00
Chr07	irgsp1_rep	mRNA	4878496	4880469	.	+	.	ID=Os07t0190700-01;Name=Os07t0190700-01;Locus_id=Os07g0190700;Note=Hypothetical protein.;Transcript_evidence=AK111434 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-182-H11;Expression=AK111434;TENOR=Os07t0190700-01;KEGG=Os07t0190700-01
Chr07	irgsp1_rep	five_prime_UTR	4878496	4880021	.	+	.	Parent=Os07t0190700-01
Chr07	irgsp1_rep	CDS	4880022	4880324	.	+	0	Parent=Os07t0190700-01
Chr07	irgsp1_rep	three_prime_UTR	4880325	4880469	.	+	.	Parent=Os07t0190700-01
Chr07	irgsp1_rep	mRNA	4880571	4882104	.	-	.	ID=Os07t0190800-01;Name=Os07t0190800-01;Locus_id=Os07g0190800;CGSNL Gene Symbol=TRXH5;CGSNL Gene Name=THIOREDOXIN H-TYPE 5;Oryzabase Gene Symbol Synonym(s)=OsTRXh5%2C OsTrx24%2C Os4%2C OsTrxh4;Oryzabase Gene Name Synonym(s)=Thioredoxin H-type 5%2C H-type Thioredoxin 5%2C Thioredoxin 24%2C thioredoxin h4;Note=Similar to Thioredoxin h.;Transcript_evidence=AK241734 (DDBJ%2C Best hit);ORF_evidence=A2YJ11 (UniProt);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Thioredoxin (IPR005746),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766),Thioredoxin%2C conserved site (IPR017937);NIAS_FLcDNA=J065200H08;Oryzabase=9908;TENOR=Os07t0190800-01;KEGG=Os07t0190800-01
Chr07	irgsp1_rep	five_prime_UTR	4882064	4882104	.	-	.	Parent=Os07t0190800-01
Chr07	irgsp1_rep	CDS	4881929	4882063	.	-	0	Parent=Os07t0190800-01
Chr07	irgsp1_rep	CDS	4881548	4881670	.	-	0	Parent=Os07t0190800-01
Chr07	irgsp1_rep	CDS	4880833	4880991	.	-	0	Parent=Os07t0190800-01
Chr07	irgsp1_rep	three_prime_UTR	4880571	4880832	.	-	.	Parent=Os07t0190800-01
Chr07	irgsp1_rep	mRNA	4882878	4890086	.	-	.	ID=Os07t0190900-01;Name=Os07t0190900-01;Locus_id=Os07g0190900;CGSNL Gene Symbol=DLN178;CGSNL Gene Name=DLN REPRESSOR 178;Oryzabase Gene Symbol Synonym(s)=OsDLN178;Oryzabase Gene Name Synonym(s)=DLN repressor 178%2C DLN motif protein 178;Note=Forkhead-associated domain containing protein.;Transcript_evidence=AK073533 (DDBJ%2C Best hit);ORF_evidence=A3BHE5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Forkhead-associated (FHA) domain (IPR000253),SMAD/FHA domain (IPR008984);NIAS_FLcDNA=J033046D05;Oryzabase=23214;Expression=AK073533;TENOR=Os07t0190900-01;KEGG=Os07t0190900-01
Chr07	irgsp1_rep	five_prime_UTR	4889981	4890086	.	-	.	Parent=Os07t0190900-01
Chr07	irgsp1_rep	CDS	4889912	4889980	.	-	0	Parent=Os07t0190900-01
Chr07	irgsp1_rep	CDS	4886480	4888462	.	-	0	Parent=Os07t0190900-01
Chr07	irgsp1_rep	CDS	4886346	4886403	.	-	0	Parent=Os07t0190900-01
Chr07	irgsp1_rep	CDS	4886068	4886216	.	-	2	Parent=Os07t0190900-01
Chr07	irgsp1_rep	CDS	4885621	4885707	.	-	0	Parent=Os07t0190900-01
Chr07	irgsp1_rep	CDS	4883434	4883562	.	-	0	Parent=Os07t0190900-01
Chr07	irgsp1_rep	CDS	4883112	4883234	.	-	0	Parent=Os07t0190900-01
Chr07	irgsp1_rep	three_prime_UTR	4882878	4883111	.	-	.	Parent=Os07t0190900-01
Chr07	irgsp1_rep	mRNA	4882878	4888191	.	-	.	ID=Os07t0190900-02;Name=Os07t0190900-02;Locus_id=Os07g0190900;CGSNL Gene Symbol=DLN178;CGSNL Gene Name=DLN REPRESSOR 178;Oryzabase Gene Symbol Synonym(s)=OsDLN178;Oryzabase Gene Name Synonym(s)=DLN repressor 178%2C DLN motif protein 178;Note=Hypothetical conserved gene.;Transcript_evidence=AK067037 (DDBJ%2C Best hit);ORF_evidence=A3BHE5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Forkhead-associated (FHA) domain (IPR000253),SMAD/FHA domain (IPR008984);NIAS_FLcDNA=J013089B09;Oryzabase=23214;Expression=AK067037;TENOR=Os07t0190900-02;KEGG=Os07t0190900-02
Chr07	irgsp1_rep	five_prime_UTR	4888190	4888191	.	-	.	Parent=Os07t0190900-02
Chr07	irgsp1_rep	CDS	4886480	4888189	.	-	0	Parent=Os07t0190900-02
Chr07	irgsp1_rep	CDS	4886346	4886403	.	-	0	Parent=Os07t0190900-02
Chr07	irgsp1_rep	CDS	4886068	4886216	.	-	2	Parent=Os07t0190900-02
Chr07	irgsp1_rep	CDS	4885621	4885707	.	-	0	Parent=Os07t0190900-02
Chr07	irgsp1_rep	CDS	4883434	4883562	.	-	0	Parent=Os07t0190900-02
Chr07	irgsp1_rep	CDS	4883112	4883234	.	-	0	Parent=Os07t0190900-02
Chr07	irgsp1_rep	three_prime_UTR	4882878	4883111	.	-	.	Parent=Os07t0190900-02
Chr07	irgsp1_rep	mRNA	4890273	4893660	.	+	.	ID=Os07t0191000-01;Name=Os07t0191000-01;Locus_id=Os07g0191000;Note=Inositol monophosphatase family protein.;Transcript_evidence=AK071379 (DDBJ%2C Best hit),AK103440 (DDBJ%2C Best hit);ORF_evidence=NP_001147208.1 (RefSeq);GO=Molecular Function: histidinol-phosphatase activity (GO:0004401),Molecular Function: inositol or phosphatidylinositol phosphatase activity (GO:0004437);InterPro=Inositol monophosphatase (IPR000760),Histidinol-phosphate phosphatase%2C putative%2C inositol monophosphatase (IPR011809),Inositol monophosphatase%2C metal-binding site (IPR020583);NIAS_FLcDNA=J023095D21,J033129C22;TENOR=Os07t0191000-01
Chr07	irgsp1_rep	five_prime_UTR	4890273	4890467	.	+	.	Parent=Os07t0191000-01
Chr07	irgsp1_rep	five_prime_UTR	4890604	4890674	.	+	.	Parent=Os07t0191000-01
Chr07	irgsp1_rep	five_prime_UTR	4890775	4890848	.	+	.	Parent=Os07t0191000-01
Chr07	irgsp1_rep	CDS	4890849	4891182	.	+	0	Parent=Os07t0191000-01
Chr07	irgsp1_rep	CDS	4891296	4891374	.	+	2	Parent=Os07t0191000-01
Chr07	irgsp1_rep	CDS	4891477	4891571	.	+	1	Parent=Os07t0191000-01
Chr07	irgsp1_rep	CDS	4891650	4891699	.	+	2	Parent=Os07t0191000-01
Chr07	irgsp1_rep	CDS	4892064	4892188	.	+	0	Parent=Os07t0191000-01
Chr07	irgsp1_rep	CDS	4892551	4892617	.	+	1	Parent=Os07t0191000-01
Chr07	irgsp1_rep	CDS	4892719	4892808	.	+	0	Parent=Os07t0191000-01
Chr07	irgsp1_rep	CDS	4893129	4893240	.	+	0	Parent=Os07t0191000-01
Chr07	irgsp1_rep	CDS	4893445	4893515	.	+	2	Parent=Os07t0191000-01
Chr07	irgsp1_rep	three_prime_UTR	4893516	4893660	.	+	.	Parent=Os07t0191000-01
Chr07	irgsp1_rep	mRNA	4914656	4920788	.	+	.	ID=Os07t0191200-01;Name=Os07t0191200-01;Locus_id=Os07g0191200;RAP-DB Gene Symbol Synonym(s)=OsPMA2%2C OsA2;RAP-DB Gene Name Synonym(s)=PM H<sup>+</sup>-ATPase 2;CGSNL Gene Symbol=AHA2;CGSNL Gene Name=H+-ATPASE 2;Oryzabase Gene Symbol Synonym(s)=OSA2%2C OsA2%2C osAHA2%2C AHA2%2C OsPMA2;Oryzabase Gene Name Synonym(s)=plasma membrane H+-ATPase 2%2C PM H+-ATPase 2%2C plasma membrane H+ P-Type ATPase 2;Note=Plasma membrane proton pump ATPase (H<sup>+</sup>-ATPase)%2C Response to iron deficiency%2C Nitrogen uptake;Transcript_evidence=AK121402;ORF_evidence=Q8L6I2;GO=Biological Process: proton export across plasma membrane (GO:0120029),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: proton-exporting ATPase activity%2C phosphorylative mechanism (GO:0008553),Cellular Component: integral component of membrane (GO:0016021);InterPro=P-type ATPase%2C transmembrane domain superfamily (IPR023298),P-type ATPase%2C A domain superfamily (IPR008250),HAD-like superfamily (IPR036412),P-type ATPase%2C cytoplasmic domain N (IPR023299),HAD superfamily (IPR023214),P-type ATPase (IPR001757),P-type ATPase%2C subfamily IIIA (IPR006534),Cation-transporting P-type ATPase%2C N-terminal (IPR004014),P-type ATPase%2C phosphorylation site (IPR018303);NIAS_FLcDNA=J023131O20;Manual Curation=May 22%2C 2020;Literature_PMID=25711814,21421368;Oryzabase=11187;Expression=AK121402;TENOR=Os07t0191200-01;KEGG=Os07t0191200-01 (EC:3.6.3.6)
Chr07	irgsp1_rep	five_prime_UTR	4914656	4914784	.	+	.	Parent=Os07t0191200-01
Chr07	irgsp1_rep	CDS	4914785	4914838	.	+	0	Parent=Os07t0191200-01
Chr07	irgsp1_rep	CDS	4915427	4915546	.	+	0	Parent=Os07t0191200-01
Chr07	irgsp1_rep	CDS	4915668	4915766	.	+	0	Parent=Os07t0191200-01
Chr07	irgsp1_rep	CDS	4915886	4916023	.	+	0	Parent=Os07t0191200-01
Chr07	irgsp1_rep	CDS	4916116	4916250	.	+	0	Parent=Os07t0191200-01
Chr07	irgsp1_rep	CDS	4916349	4916526	.	+	0	Parent=Os07t0191200-01
Chr07	irgsp1_rep	CDS	4916616	4916824	.	+	2	Parent=Os07t0191200-01
Chr07	irgsp1_rep	CDS	4916909	4917028	.	+	0	Parent=Os07t0191200-01
Chr07	irgsp1_rep	CDS	4917120	4917239	.	+	0	Parent=Os07t0191200-01
Chr07	irgsp1_rep	CDS	4917325	4917447	.	+	0	Parent=Os07t0191200-01
Chr07	irgsp1_rep	CDS	4917556	4917660	.	+	0	Parent=Os07t0191200-01
Chr07	irgsp1_rep	CDS	4917744	4917888	.	+	0	Parent=Os07t0191200-01
Chr07	irgsp1_rep	CDS	4918185	4918349	.	+	2	Parent=Os07t0191200-01
Chr07	irgsp1_rep	CDS	4918469	4918707	.	+	2	Parent=Os07t0191200-01
Chr07	irgsp1_rep	CDS	4918787	4918819	.	+	0	Parent=Os07t0191200-01
Chr07	irgsp1_rep	CDS	4918930	4919011	.	+	0	Parent=Os07t0191200-01
Chr07	irgsp1_rep	CDS	4919162	4919322	.	+	2	Parent=Os07t0191200-01
Chr07	irgsp1_rep	CDS	4919414	4919599	.	+	0	Parent=Os07t0191200-01
Chr07	irgsp1_rep	CDS	4919725	4919907	.	+	0	Parent=Os07t0191200-01
Chr07	irgsp1_rep	CDS	4920014	4920195	.	+	0	Parent=Os07t0191200-01
Chr07	irgsp1_rep	CDS	4920309	4920405	.	+	1	Parent=Os07t0191200-01
Chr07	irgsp1_rep	three_prime_UTR	4920406	4920788	.	+	.	Parent=Os07t0191200-01
Chr07	irgsp1_rep	mRNA	4916143	4920650	.	+	.	ID=Os07t0191200-02;Name=Os07t0191200-02;Locus_id=Os07g0191200;CGSNL Gene Symbol=AHA2;CGSNL Gene Name=H+-ATPASE 2;Oryzabase Gene Symbol Synonym(s)=OSA2%2C OsA2%2C osAHA2%2C AHA2%2C OsPMA2;Oryzabase Gene Name Synonym(s)=plasma membrane H+-ATPase 2%2C PM H+-ATPase 2%2C plasma membrane H+ P-Type ATPase 2;Note=Similar to Plasma membrane H+-ATPase.;Transcript_evidence=AK072909 (DDBJ%2C Best hit);ORF_evidence=Q43002 (UniProt);GO=Biological Process: ATP catabolic process (GO:0006200),Biological Process: ATP biosynthetic process (GO:0006754),Biological Process: cation transport (GO:0006812),Biological Process: metabolic process (GO:0008152),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662),Molecular Function: ATPase activity (GO:0016887),Molecular Function: metal ion binding (GO:0046872);InterPro=ATPase%2C P-type%2C H+ transporting proton pump (IPR000695),ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),Haloacid dehalogenase-like hydrolase (IPR005834),ATPase%2C P-type%2C plasma-membrane proton-efflux (IPR006534),ATPase%2C P-type%2C ATPase-associated domain (IPR008250),ATPase%2C P-type phosphorylation site (IPR018303),HAD-like domain (IPR023214),ATPase%2C P-type%2C  transmembrane domain (IPR023298),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C  P-type%2C cytoplasmic transduction domain A (IPR023300);NIAS_FLcDNA=J023148A19;Oryzabase=11187;Expression=AK072909;TENOR=Os07t0191200-02;KEGG=Os07t0191200-02 (EC:3.6.3.6)
Chr07	irgsp1_rep	CDS	4916143	4916250	.	+	0	Parent=Os07t0191200-02
Chr07	irgsp1_rep	CDS	4916349	4916526	.	+	0	Parent=Os07t0191200-02
Chr07	irgsp1_rep	CDS	4916616	4916824	.	+	2	Parent=Os07t0191200-02
Chr07	irgsp1_rep	CDS	4916909	4917028	.	+	0	Parent=Os07t0191200-02
Chr07	irgsp1_rep	CDS	4917120	4917239	.	+	0	Parent=Os07t0191200-02
Chr07	irgsp1_rep	CDS	4917325	4917447	.	+	0	Parent=Os07t0191200-02
Chr07	irgsp1_rep	CDS	4917556	4917660	.	+	0	Parent=Os07t0191200-02
Chr07	irgsp1_rep	CDS	4917744	4917888	.	+	0	Parent=Os07t0191200-02
Chr07	irgsp1_rep	CDS	4918185	4918349	.	+	2	Parent=Os07t0191200-02
Chr07	irgsp1_rep	CDS	4918469	4918707	.	+	2	Parent=Os07t0191200-02
Chr07	irgsp1_rep	CDS	4918787	4918819	.	+	0	Parent=Os07t0191200-02
Chr07	irgsp1_rep	CDS	4918930	4919011	.	+	0	Parent=Os07t0191200-02
Chr07	irgsp1_rep	CDS	4919162	4919322	.	+	2	Parent=Os07t0191200-02
Chr07	irgsp1_rep	CDS	4919414	4919599	.	+	0	Parent=Os07t0191200-02
Chr07	irgsp1_rep	CDS	4919725	4919907	.	+	0	Parent=Os07t0191200-02
Chr07	irgsp1_rep	CDS	4920014	4920195	.	+	0	Parent=Os07t0191200-02
Chr07	irgsp1_rep	CDS	4920309	4920405	.	+	1	Parent=Os07t0191200-02
Chr07	irgsp1_rep	three_prime_UTR	4920406	4920650	.	+	.	Parent=Os07t0191200-02
Chr07	irgsp1_rep	mRNA	4915426	4920406	.	-	.	ID=Os07t0191250-00;Name=Os07t0191250-00;Locus_id=Os07g0191250;Note=Hypothetical protein.;Transcript_evidence=tplb0039e05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0191250-00
Chr07	irgsp1_rep	five_prime_UTR	4920307	4920406	.	-	.	Parent=Os07t0191250-00
Chr07	irgsp1_rep	five_prime_UTR	4920008	4920193	.	-	.	Parent=Os07t0191250-00
Chr07	irgsp1_rep	five_prime_UTR	4919722	4919895	.	-	.	Parent=Os07t0191250-00
Chr07	irgsp1_rep	five_prime_UTR	4919404	4919596	.	-	.	Parent=Os07t0191250-00
Chr07	irgsp1_rep	five_prime_UTR	4919146	4919315	.	-	.	Parent=Os07t0191250-00
Chr07	irgsp1_rep	five_prime_UTR	4918928	4919001	.	-	.	Parent=Os07t0191250-00
Chr07	irgsp1_rep	five_prime_UTR	4918467	4918748	.	-	.	Parent=Os07t0191250-00
Chr07	irgsp1_rep	five_prime_UTR	4918190	4918346	.	-	.	Parent=Os07t0191250-00
Chr07	irgsp1_rep	five_prime_UTR	4917742	4917895	.	-	.	Parent=Os07t0191250-00
Chr07	irgsp1_rep	five_prime_UTR	4917554	4917662	.	-	.	Parent=Os07t0191250-00
Chr07	irgsp1_rep	five_prime_UTR	4917309	4917450	.	-	.	Parent=Os07t0191250-00
Chr07	irgsp1_rep	five_prime_UTR	4917112	4917225	.	-	.	Parent=Os07t0191250-00
Chr07	irgsp1_rep	five_prime_UTR	4916920	4917019	.	-	.	Parent=Os07t0191250-00
Chr07	irgsp1_rep	five_prime_UTR	4916626	4916832	.	-	.	Parent=Os07t0191250-00
Chr07	irgsp1_rep	five_prime_UTR	4916346	4916533	.	-	.	Parent=Os07t0191250-00
Chr07	irgsp1_rep	five_prime_UTR	4916096	4916247	.	-	.	Parent=Os07t0191250-00
Chr07	irgsp1_rep	five_prime_UTR	4915999	4916005	.	-	.	Parent=Os07t0191250-00
Chr07	irgsp1_rep	CDS	4915885	4915998	.	-	0	Parent=Os07t0191250-00
Chr07	irgsp1_rep	CDS	4915666	4915765	.	-	0	Parent=Os07t0191250-00
Chr07	irgsp1_rep	CDS	4915426	4915544	.	-	2	Parent=Os07t0191250-00
Chr07	irgsp1_rep	mRNA	4925896	4930714	.	-	.	ID=Os07t0191301-00;Name=Os07t0191301-00;Locus_id=Os07g0191301;Note=Hypothetical conserved gene.;Transcript_evidence=CT837629 (DDBJ%2C Best hit);ORF_evidence=NP_001046717.1 (RefSeq);TENOR=Os07t0191301-00;KEGG=Os07t0191301-00
Chr07	irgsp1_rep	five_prime_UTR	4930673	4930714	.	-	.	Parent=Os07t0191301-00
Chr07	irgsp1_rep	CDS	4930624	4930672	.	-	0	Parent=Os07t0191301-00
Chr07	irgsp1_rep	CDS	4926727	4927024	.	-	2	Parent=Os07t0191301-00
Chr07	irgsp1_rep	CDS	4926522	4926543	.	-	1	Parent=Os07t0191301-00
Chr07	irgsp1_rep	three_prime_UTR	4926423	4926521	.	-	.	Parent=Os07t0191301-00
Chr07	irgsp1_rep	three_prime_UTR	4926176	4926328	.	-	.	Parent=Os07t0191301-00
Chr07	irgsp1_rep	three_prime_UTR	4925896	4926084	.	-	.	Parent=Os07t0191301-00
Chr07	irgsp1_rep	mRNA	4935821	4937587	.	-	.	ID=Os07t0191401-00;Name=Os07t0191401-00;Locus_id=Os07g0191401;Note=Hypothetical protein.;Transcript_evidence=tplb0021n11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0191401-00
Chr07	irgsp1_rep	five_prime_UTR	4936801	4937587	.	-	.	Parent=Os07t0191401-00
Chr07	irgsp1_rep	CDS	4935821	4936800	.	-	0	Parent=Os07t0191401-00
Chr07	irgsp1_rep	mRNA	4935899	4937910	.	+	.	ID=Os07t0191500-01;Name=Os07t0191500-01;Locus_id=Os07g0191500;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK099718 (DDBJ%2C Best hit);ORF_evidence=B6SPB1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013088A21;Expression=AK099718;TENOR=Os07t0191500-01;KEGG=Os07t0191500-01
Chr07	irgsp1_rep	five_prime_UTR	4935899	4935936	.	+	.	Parent=Os07t0191500-01
Chr07	irgsp1_rep	CDS	4935937	4937589	.	+	0	Parent=Os07t0191500-01
Chr07	irgsp1_rep	three_prime_UTR	4937590	4937910	.	+	.	Parent=Os07t0191500-01
Chr07	irgsp1_rep	mRNA	4940554	4942779	.	+	.	ID=Os07t0191600-01;Name=Os07t0191600-01;Locus_id=Os07g0191600;Oryzabase Gene Symbol Synonym(s)=STR2;Oryzabase Gene Name Synonym(s)=ABC transporter STR2%2C Medicago truncatula stunted arbuscule 2;Note=Protein of unknown function DUF569 domain containing protein.;Transcript_evidence=AK102563 (DDBJ%2C Best hit);ORF_evidence=B8B850 (UniProt);InterPro=Protein of unknown function DUF569 (IPR007679),Actin cross-linking (IPR008999);NIAS_FLcDNA=J033097K02;Oryzabase=14305;TENOR=Os07t0191600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	4940554	4940596	.	+	.	Parent=Os07t0191600-01
Chr07	irgsp1_rep	CDS	4940597	4941493	.	+	0	Parent=Os07t0191600-01
Chr07	irgsp1_rep	CDS	4941606	4941894	.	+	0	Parent=Os07t0191600-01
Chr07	irgsp1_rep	CDS	4942479	4942498	.	+	2	Parent=Os07t0191600-01
Chr07	irgsp1_rep	three_prime_UTR	4942499	4942779	.	+	.	Parent=Os07t0191600-01
Chr07	irgsp1_rep	mRNA	4940682	4944598	.	+	.	ID=Os07t0191600-02;Name=Os07t0191600-02;Locus_id=Os07g0191600;Oryzabase Gene Symbol Synonym(s)=STR2;Oryzabase Gene Name Synonym(s)=ABC transporter STR2%2C Medicago truncatula stunted arbuscule 2;Note=ABC transporter-like domain containing protein.;Transcript_evidence=AK119391 (DDBJ%2C Best hit);ORF_evidence=XP_002310338.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=001-132-C10;Oryzabase=14305;Expression=AK119391;TENOR=Os07t0191600-02;KEGG=Os07t0191600-02
Chr07	irgsp1_rep	five_prime_UTR	4940682	4941493	.	+	.	Parent=Os07t0191600-02
Chr07	irgsp1_rep	five_prime_UTR	4941606	4941894	.	+	.	Parent=Os07t0191600-02
Chr07	irgsp1_rep	five_prime_UTR	4942479	4943797	.	+	.	Parent=Os07t0191600-02
Chr07	irgsp1_rep	CDS	4943798	4944598	.	+	0	Parent=Os07t0191600-02
Chr07	irgsp1_rep	mRNA	4940718	4942690	.	+	.	ID=Os07t0191600-03;Name=Os07t0191600-03;Locus_id=Os07g0191600;Oryzabase Gene Symbol Synonym(s)=STR2;Oryzabase Gene Name Synonym(s)=ABC transporter STR2%2C Medicago truncatula stunted arbuscule 2;Note=Protein of unknown function DUF569 domain containing protein.;Transcript_evidence=AK071418 (DDBJ%2C Best hit);ORF_evidence=B8B850 (UniProt);InterPro=Protein of unknown function DUF569 (IPR007679),Actin cross-linking (IPR008999);NIAS_FLcDNA=J023092I11;Oryzabase=14305;TENOR=Os07t0191600-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	4940718	4940719	.	+	.	Parent=Os07t0191600-03
Chr07	irgsp1_rep	CDS	4940720	4941493	.	+	0	Parent=Os07t0191600-03
Chr07	irgsp1_rep	CDS	4941606	4941894	.	+	0	Parent=Os07t0191600-03
Chr07	irgsp1_rep	CDS	4942479	4942498	.	+	2	Parent=Os07t0191600-03
Chr07	irgsp1_rep	three_prime_UTR	4942499	4942690	.	+	.	Parent=Os07t0191600-03
Chr07	irgsp1_rep	mRNA	4943798	4946602	.	+	.	ID=Os07t0191600-04;Name=Os07t0191600-04;Locus_id=Os07g0191600;RAP-DB Gene Symbol Synonym(s)=STR2;RAP-DB Gene Name Synonym(s)=ABC transporter STR2%2C Medicago truncatula stunted arbuscule 2;Oryzabase Gene Symbol Synonym(s)=STR2;Oryzabase Gene Name Synonym(s)=ABC transporter STR2%2C Medicago truncatula stunted arbuscule 2;Note=Half-size ABC transporter%2C Mycorrhizal arbuscule formation;Transcript_evidence=JN608806;ORF_evidence=Q69S68;GO=Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Cellular Component: membrane (GO:0016020);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),ABC transporter-like (IPR003439),AAA+ ATPase domain (IPR003593),ABC-2 type transporter (IPR013525),ABC transporter%2C conserved site (IPR017871);Manual Curation=March 18%2C 2015;Literature_PMID=22077667;Oryzabase=14305
Chr07	irgsp1_rep	CDS	4943798	4945536	.	+	0	Parent=Os07t0191600-04
Chr07	irgsp1_rep	CDS	4946031	4946376	.	+	1	Parent=Os07t0191600-04
Chr07	irgsp1_rep	three_prime_UTR	4946377	4946602	.	+	.	Parent=Os07t0191600-04
Chr07	irgsp1_rep	mRNA	4941012	4946359	.	-	.	ID=Os07t0191625-00;Name=Os07t0191625-00;Locus_id=Os07g0191625;Note=Hypothetical protein.;Transcript_evidence=AK361241 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0191625-00
Chr07	irgsp1_rep	five_prime_UTR	4946021	4946359	.	-	.	Parent=Os07t0191625-00
Chr07	irgsp1_rep	five_prime_UTR	4944949	4945531	.	-	.	Parent=Os07t0191625-00
Chr07	irgsp1_rep	CDS	4944760	4944948	.	-	0	Parent=Os07t0191625-00
Chr07	irgsp1_rep	CDS	4943968	4944556	.	-	0	Parent=Os07t0191625-00
Chr07	irgsp1_rep	CDS	4941024	4941136	.	-	2	Parent=Os07t0191625-00
Chr07	irgsp1_rep	three_prime_UTR	4941012	4941023	.	-	.	Parent=Os07t0191625-00
Chr07	irgsp1_rep	mRNA	4947651	4948597	.	+	.	ID=Os07t0191650-00;Name=Os07t0191650-00;Locus_id=Os07g0191650;Note=Similar to F-box domain containing protein%2C expressed.;Transcript_evidence=CT836138 (DDBJ%2C Best hit);ORF_evidence=Q10BX1 (UniProt);TENOR=Os07t0191650-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	4947651	4947715	.	+	.	Parent=Os07t0191650-00
Chr07	irgsp1_rep	CDS	4947716	4947779	.	+	0	Parent=Os07t0191650-00
Chr07	irgsp1_rep	CDS	4947888	4948008	.	+	2	Parent=Os07t0191650-00
Chr07	irgsp1_rep	CDS	4948170	4948242	.	+	1	Parent=Os07t0191650-00
Chr07	irgsp1_rep	three_prime_UTR	4948243	4948597	.	+	.	Parent=Os07t0191650-00
Chr07	irgsp1_rep	mRNA	4949828	4963161	.	+	.	ID=Os07t0191700-01;Name=Os07t0191700-01;Locus_id=Os07g0191700;Note=Similar to AT.I.24-9 protein (Fragment).;Transcript_evidence=AK103768 (DDBJ%2C Best hit),AK066389 (DDBJ%2C Best hit);ORF_evidence=Q0WZC2 (UniProt);NIAS_FLcDNA=J033143I15,J013066C04;Expression=AK103768;TENOR=Os07t0191700-01;KEGG=Os07t0191700-01
Chr07	irgsp1_rep	five_prime_UTR	4949828	4949937	.	+	.	Parent=Os07t0191700-01
Chr07	irgsp1_rep	CDS	4949938	4950099	.	+	0	Parent=Os07t0191700-01
Chr07	irgsp1_rep	CDS	4950188	4950571	.	+	0	Parent=Os07t0191700-01
Chr07	irgsp1_rep	CDS	4951347	4951397	.	+	0	Parent=Os07t0191700-01
Chr07	irgsp1_rep	CDS	4951507	4951589	.	+	0	Parent=Os07t0191700-01
Chr07	irgsp1_rep	CDS	4951666	4951765	.	+	1	Parent=Os07t0191700-01
Chr07	irgsp1_rep	CDS	4952258	4952336	.	+	0	Parent=Os07t0191700-01
Chr07	irgsp1_rep	CDS	4952805	4952928	.	+	2	Parent=Os07t0191700-01
Chr07	irgsp1_rep	CDS	4953453	4953559	.	+	1	Parent=Os07t0191700-01
Chr07	irgsp1_rep	CDS	4953658	4953786	.	+	2	Parent=Os07t0191700-01
Chr07	irgsp1_rep	CDS	4954873	4954937	.	+	2	Parent=Os07t0191700-01
Chr07	irgsp1_rep	CDS	4955048	4955215	.	+	0	Parent=Os07t0191700-01
Chr07	irgsp1_rep	CDS	4955325	4955485	.	+	0	Parent=Os07t0191700-01
Chr07	irgsp1_rep	CDS	4955569	4955600	.	+	1	Parent=Os07t0191700-01
Chr07	irgsp1_rep	CDS	4955714	4955895	.	+	2	Parent=Os07t0191700-01
Chr07	irgsp1_rep	CDS	4956234	4956313	.	+	0	Parent=Os07t0191700-01
Chr07	irgsp1_rep	CDS	4956733	4956798	.	+	1	Parent=Os07t0191700-01
Chr07	irgsp1_rep	CDS	4956908	4957197	.	+	1	Parent=Os07t0191700-01
Chr07	irgsp1_rep	CDS	4958281	4958388	.	+	2	Parent=Os07t0191700-01
Chr07	irgsp1_rep	CDS	4959369	4959466	.	+	2	Parent=Os07t0191700-01
Chr07	irgsp1_rep	CDS	4959570	4959630	.	+	0	Parent=Os07t0191700-01
Chr07	irgsp1_rep	CDS	4960117	4960193	.	+	2	Parent=Os07t0191700-01
Chr07	irgsp1_rep	CDS	4960297	4960368	.	+	0	Parent=Os07t0191700-01
Chr07	irgsp1_rep	CDS	4960442	4960518	.	+	0	Parent=Os07t0191700-01
Chr07	irgsp1_rep	CDS	4960757	4960837	.	+	1	Parent=Os07t0191700-01
Chr07	irgsp1_rep	CDS	4961138	4961240	.	+	1	Parent=Os07t0191700-01
Chr07	irgsp1_rep	CDS	4962182	4962340	.	+	0	Parent=Os07t0191700-01
Chr07	irgsp1_rep	CDS	4962544	4962933	.	+	0	Parent=Os07t0191700-01
Chr07	irgsp1_rep	three_prime_UTR	4962934	4963161	.	+	.	Parent=Os07t0191700-01
Chr07	irgsp1_rep	mRNA	4952562	4956062	.	-	.	ID=Os07t0191801-01;Name=Os07t0191801-01;Locus_id=Os07g0191801;Note=Non-protein coding transcript.;Transcript_evidence=AK288998 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090088E15;TENOR=Os07t0191801-01
Chr07	irgsp1_rep	exon	4952562	4956062	.	-	.	Parent=Os07t0191801-01
Chr07	irgsp1_rep	mRNA	4967544	4969280	.	+	.	ID=Os07t0191900-01;Name=Os07t0191900-01;Locus_id=Os07g0191900;Note=Conserved hypothetical protein.;Transcript_evidence=AK107253 (DDBJ%2C Best hit);ORF_evidence=Q8LR81 (UniProt);NIAS_FLcDNA=002-125-G05;Expression=AK107253;TENOR=Os07t0191900-01;KEGG=Os07t0191900-01
Chr07	irgsp1_rep	five_prime_UTR	4967544	4967610	.	+	.	Parent=Os07t0191900-01
Chr07	irgsp1_rep	CDS	4967611	4968006	.	+	0	Parent=Os07t0191900-01
Chr07	irgsp1_rep	three_prime_UTR	4968007	4969280	.	+	.	Parent=Os07t0191900-01
Chr07	irgsp1_rep	mRNA	4969408	4971145	.	+	.	ID=Os07t0192000-01;Name=Os07t0192000-01;Locus_id=Os07g0192000;Note=ATPase%2C AAA-type%2C core domain containing protein.;Transcript_evidence=AK065505 (DDBJ%2C Best hit);ORF_evidence=B6SVY2 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);NIAS_FLcDNA=J013027N01;Expression=AK065505;TENOR=Os07t0192000-01;KEGG=Os07t0192000-01
Chr07	irgsp1_rep	five_prime_UTR	4969408	4969446	.	+	.	Parent=Os07t0192000-01
Chr07	irgsp1_rep	CDS	4969447	4970997	.	+	0	Parent=Os07t0192000-01
Chr07	irgsp1_rep	three_prime_UTR	4970998	4971145	.	+	.	Parent=Os07t0192000-01
Chr07	irgsp1_rep	mRNA	4978007	4981651	.	-	.	ID=Os07t0192300-01;Name=Os07t0192300-01;Locus_id=Os07g0192300;CGSNL Gene Symbol=NAL11;CGSNL Gene Name=NARROW LEAF 11;Oryzabase Gene Symbol Synonym(s)=OsDjC58%2C DjC58;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C58%2C narrow leaf 11;Note=Heat shock protein DnaJ%2C N-terminal domain containing protein.;Transcript_evidence=AK103333 (DDBJ%2C Best hit);ORF_evidence=NP_001146964.1 (RefSeq);GO=Molecular Function: heat shock protein binding (GO:0031072);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623);NIAS_FLcDNA=J033125O08;Oryzabase=12215;Expression=AK103333;TENOR=Os07t0192300-01;KEGG=Os07t0192300-01
Chr07	irgsp1_rep	five_prime_UTR	4980619	4981651	.	-	.	Parent=Os07t0192300-01
Chr07	irgsp1_rep	CDS	4980431	4980618	.	-	0	Parent=Os07t0192300-01
Chr07	irgsp1_rep	CDS	4978248	4978404	.	-	1	Parent=Os07t0192300-01
Chr07	irgsp1_rep	three_prime_UTR	4978007	4978247	.	-	.	Parent=Os07t0192300-01
Chr07	irgsp1_rep	mRNA	4986843	4987429	.	+	.	ID=Os07t0192400-01;Name=Os07t0192400-01;Locus_id=Os07g0192400;Note=Non-protein coding transcript.;Transcript_evidence=AK120724 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023002J20;TENOR=Os07t0192400-01
Chr07	irgsp1_rep	exon	4986843	4987429	.	+	.	Parent=Os07t0192400-01
Chr07	irgsp1_rep	mRNA	4999115	5000023	.	-	.	ID=Os07t0192550-00;Name=Os07t0192550-00;Locus_id=Os07g0192550;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001183155.1 (RefSeq);TENOR=Os07t0192550-00
Chr07	irgsp1_rep	CDS	4999739	5000023	.	-	0	Parent=Os07t0192550-00
Chr07	irgsp1_rep	CDS	4999115	4999444	.	-	0	Parent=Os07t0192550-00
Chr07	irgsp1_rep	mRNA	5003872	5005726	.	+	.	ID=Os07t0192700-01;Name=Os07t0192700-01;Locus_id=Os07g0192700;Note=ATPase%2C AAA-type%2C core domain containing protein.;Transcript_evidence=AK109791 (DDBJ%2C Best hit);ORF_evidence=A2YJ25 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);NIAS_FLcDNA=002-147-D09;Expression=AK109791;TENOR=Os07t0192700-01;KEGG=Os07t0192700-01
Chr07	irgsp1_rep	five_prime_UTR	5003872	5003916	.	+	.	Parent=Os07t0192700-01
Chr07	irgsp1_rep	CDS	5003917	5005518	.	+	0	Parent=Os07t0192700-01
Chr07	irgsp1_rep	three_prime_UTR	5005519	5005726	.	+	.	Parent=Os07t0192700-01
Chr07	irgsp1_rep	mRNA	5009488	5011125	.	-	.	ID=Os07t0192800-01;Name=Os07t0192800-01;Locus_id=Os07g0192800;CGSNL Gene Name=AAA-ATPASE 2;Oryzabase Gene Name Synonym(s)=OsAAA-ATPase2%2C OsAAA-ATPase 2%2C AAA-ATPase2;Note=Similar to ATPase 3.;Transcript_evidence=AK288139 (DDBJ%2C Best hit);ORF_evidence=NP_001148126.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);NIAS_FLcDNA=J080307E19;Oryzabase=23147;TENOR=Os07t0192800-01;KEGG=Os07t0192800-01
Chr07	irgsp1_rep	five_prime_UTR	5011090	5011125	.	-	.	Parent=Os07t0192800-01
Chr07	irgsp1_rep	CDS	5010088	5011089	.	-	0	Parent=Os07t0192800-01
Chr07	irgsp1_rep	CDS	5009590	5009949	.	-	0	Parent=Os07t0192800-01
Chr07	irgsp1_rep	three_prime_UTR	5009488	5009589	.	-	.	Parent=Os07t0192800-01
Chr07	irgsp1_rep	mRNA	5013790	5019921	.	+	.	ID=Os07t0192900-00;Name=Os07t0192900-00;Locus_id=Os07g0192900;Note=Hypothetical conserved gene.;Transcript_evidence=BT034507 (DDBJ);ORF_evidence=E4MW88 (UniProt);GO=Biological Process: RNA processing (GO:0006396);InterPro=WW domain binding protein 11 (IPR019007);TENOR=Os07t0192900-00;KEGG=Os07t0192900-00
Chr07	irgsp1_rep	five_prime_UTR	5013790	5013893	.	+	.	Parent=Os07t0192900-00
Chr07	irgsp1_rep	CDS	5013894	5013974	.	+	0	Parent=Os07t0192900-00
Chr07	irgsp1_rep	CDS	5015656	5015749	.	+	0	Parent=Os07t0192900-00
Chr07	irgsp1_rep	CDS	5016591	5016676	.	+	2	Parent=Os07t0192900-00
Chr07	irgsp1_rep	CDS	5017228	5017277	.	+	0	Parent=Os07t0192900-00
Chr07	irgsp1_rep	CDS	5017365	5017434	.	+	1	Parent=Os07t0192900-00
Chr07	irgsp1_rep	CDS	5017516	5017597	.	+	0	Parent=Os07t0192900-00
Chr07	irgsp1_rep	CDS	5017715	5018089	.	+	2	Parent=Os07t0192900-00
Chr07	irgsp1_rep	CDS	5018262	5018314	.	+	2	Parent=Os07t0192900-00
Chr07	irgsp1_rep	three_prime_UTR	5018315	5018789	.	+	.	Parent=Os07t0192900-00
Chr07	irgsp1_rep	three_prime_UTR	5019671	5019921	.	+	.	Parent=Os07t0192900-00
Chr07	irgsp1_rep	mRNA	5023650	5027745	.	+	.	ID=Os07t0193000-01;Name=Os07t0193000-01;Locus_id=Os07g0193000;Note=HIPL1 protein precursor.;Transcript_evidence=AK243500 (DDBJ%2C Best hit);ORF_evidence=C3TX91 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C quinone or similar compound as acceptor (GO:0016901),Molecular Function: quinone binding (GO:0048038);InterPro=Soluble quinoprotein glucose/sorbosone dehydrogenase (IPR011041),Six-bladed beta-propeller%2C TolB-like (IPR011042),Glucose/Sorbosone dehydrogenase (IPR012938);NIAS_FLcDNA=J100074H18;TENOR=Os07t0193000-01;KEGG=Os07t0193000-01
Chr07	irgsp1_rep	five_prime_UTR	5023650	5023689	.	+	.	Parent=Os07t0193000-01
Chr07	irgsp1_rep	CDS	5023690	5023798	.	+	0	Parent=Os07t0193000-01
Chr07	irgsp1_rep	CDS	5023884	5024041	.	+	2	Parent=Os07t0193000-01
Chr07	irgsp1_rep	CDS	5024124	5024915	.	+	0	Parent=Os07t0193000-01
Chr07	irgsp1_rep	CDS	5025392	5025608	.	+	0	Parent=Os07t0193000-01
Chr07	irgsp1_rep	CDS	5026128	5026297	.	+	2	Parent=Os07t0193000-01
Chr07	irgsp1_rep	CDS	5026834	5027478	.	+	0	Parent=Os07t0193000-01
Chr07	irgsp1_rep	three_prime_UTR	5027479	5027745	.	+	.	Parent=Os07t0193000-01
Chr07	irgsp1_rep	mRNA	5026840	5027482	.	-	.	ID=Os07t0193100-00;Name=Os07t0193100-00;Locus_id=Os07g0193100;Note=Non-protein coding transcript.;Transcript_evidence=EU949559 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0193100-00
Chr07	irgsp1_rep	exon	5027080	5027482	.	-	.	Parent=Os07t0193100-00
Chr07	irgsp1_rep	exon	5026840	5026979	.	-	.	Parent=Os07t0193100-00
Chr07	irgsp1_rep	mRNA	5030626	5033824	.	+	.	ID=Os07t0193200-00;Name=Os07t0193200-00;Locus_id=Os07g0193200;Note=Ankyrin repeat containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001059105.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);TENOR=Os07t0193200-00;KEGG=Os07t0193200-00
Chr07	irgsp1_rep	CDS	5030626	5030937	.	+	0	Parent=Os07t0193200-00
Chr07	irgsp1_rep	CDS	5031760	5032042	.	+	0	Parent=Os07t0193200-00
Chr07	irgsp1_rep	CDS	5032731	5033824	.	+	2	Parent=Os07t0193200-00
Chr07	irgsp1_rep	mRNA	5071071	5076929	.	-	.	ID=Os07t0193600-01;Name=Os07t0193600-01;Locus_id=Os07g0193600;Note=Similar to Aminoacyl-tRNA synthetase.;Transcript_evidence=AK070547 (DDBJ%2C Best hit);ORF_evidence=Q2PF39 (UniProt);NIAS_FLcDNA=J023058K15;Expression=AK070547;TENOR=Os07t0193600-01;KEGG=Os07t0193600-01
Chr07	irgsp1_rep	CDS	5076873	5076929	.	-	0	Parent=Os07t0193600-01
Chr07	irgsp1_rep	CDS	5076257	5076343	.	-	0	Parent=Os07t0193600-01
Chr07	irgsp1_rep	CDS	5076125	5076162	.	-	0	Parent=Os07t0193600-01
Chr07	irgsp1_rep	CDS	5075946	5076027	.	-	1	Parent=Os07t0193600-01
Chr07	irgsp1_rep	CDS	5074880	5074986	.	-	0	Parent=Os07t0193600-01
Chr07	irgsp1_rep	CDS	5074602	5074779	.	-	1	Parent=Os07t0193600-01
Chr07	irgsp1_rep	CDS	5073772	5073864	.	-	0	Parent=Os07t0193600-01
Chr07	irgsp1_rep	CDS	5073560	5073683	.	-	0	Parent=Os07t0193600-01
Chr07	irgsp1_rep	CDS	5072842	5072884	.	-	2	Parent=Os07t0193600-01
Chr07	irgsp1_rep	CDS	5072545	5072736	.	-	1	Parent=Os07t0193600-01
Chr07	irgsp1_rep	CDS	5071684	5072461	.	-	1	Parent=Os07t0193600-01
Chr07	irgsp1_rep	three_prime_UTR	5071071	5071683	.	-	.	Parent=Os07t0193600-01
Chr07	irgsp1_rep	mRNA	5071123	5071669	.	-	.	ID=Os07t0193600-02;Name=Os07t0193600-02;Locus_id=Os07g0193600;Note=Non-protein coding transcript.;Transcript_evidence=AK059129 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-022-G03;TENOR=Os07t0193600-02
Chr07	irgsp1_rep	exon	5071123	5071669	.	-	.	Parent=Os07t0193600-02
Chr07	irgsp1_rep	mRNA	5077088	5077494	.	+	.	ID=Os07t0193701-00;Name=Os07t0193701-00;Locus_id=Os07g0193701;Note=Hypothetical protein.;Transcript_evidence=BT086982 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0193701-00
Chr07	irgsp1_rep	five_prime_UTR	5077088	5077163	.	+	.	Parent=Os07t0193701-00
Chr07	irgsp1_rep	CDS	5077164	5077494	.	+	0	Parent=Os07t0193701-00
Chr07	irgsp1_rep	mRNA	5081853	5084921	.	-	.	ID=Os07t0193800-01;Name=Os07t0193800-01;Locus_id=Os07g0193800;Oryzabase Gene Symbol Synonym(s)=OsbHLH094%2C bHLH094%2C bHLH94;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 094;Note=Similar to BHLH transcription factor (Fragment).;Transcript_evidence=AK242645 (DDBJ%2C Best hit);ORF_evidence=F1DK89 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J090025G02;Oryzabase=15380;TENOR=Os07t0193800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	5083755	5084921	.	-	.	Parent=Os07t0193800-01
Chr07	irgsp1_rep	CDS	5083467	5083754	.	-	0	Parent=Os07t0193800-01
Chr07	irgsp1_rep	CDS	5083204	5083269	.	-	0	Parent=Os07t0193800-01
Chr07	irgsp1_rep	CDS	5083016	5083084	.	-	0	Parent=Os07t0193800-01
Chr07	irgsp1_rep	CDS	5082863	5082934	.	-	0	Parent=Os07t0193800-01
Chr07	irgsp1_rep	CDS	5082119	5082250	.	-	0	Parent=Os07t0193800-01
Chr07	irgsp1_rep	three_prime_UTR	5081853	5082118	.	-	.	Parent=Os07t0193800-01
Chr07	irgsp1_rep	mRNA	5095716	5099498	.	+	.	ID=Os07t0194000-01;Name=Os07t0194000-01;Locus_id=Os07g0194000;CGSNL Gene Symbol=VAMP722;CGSNL Gene Name=VESICLE-ASSOCIATED MEMBRANE PROTEIN 722;Oryzabase Gene Symbol Synonym(s)=OsVAMP722;Oryzabase Gene Name Synonym(s)=vesicle-associated membrane protein 722;Note=Similar to Vesicle-associated membrane protein 725 (AtVAMP725).;Transcript_evidence=AK060910 (DDBJ%2C Best hit),AK099182 (DDBJ%2C Best hit),AK104653 (DDBJ%2C Best hit);ORF_evidence=B4FQX6 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: integral to membrane (GO:0016021);InterPro=Synaptobrevin (IPR001388),Longin (IPR010908),Longin-like (IPR011012);NIAS_FLcDNA=001-035-F10,J023107K01,006-311-C02;Oryzabase=23045;TENOR=Os07t0194000-01
Chr07	irgsp1_rep	five_prime_UTR	5095716	5095870	.	+	.	Parent=Os07t0194000-01
Chr07	irgsp1_rep	CDS	5095871	5096060	.	+	0	Parent=Os07t0194000-01
Chr07	irgsp1_rep	CDS	5097344	5097485	.	+	2	Parent=Os07t0194000-01
Chr07	irgsp1_rep	CDS	5097575	5097695	.	+	1	Parent=Os07t0194000-01
Chr07	irgsp1_rep	CDS	5097799	5097861	.	+	0	Parent=Os07t0194000-01
Chr07	irgsp1_rep	CDS	5098962	5099108	.	+	0	Parent=Os07t0194000-01
Chr07	irgsp1_rep	three_prime_UTR	5099109	5099498	.	+	.	Parent=Os07t0194000-01
Chr07	irgsp1_rep	mRNA	5102510	5107297	.	+	.	ID=Os07t0194100-01;Name=Os07t0194100-01;Locus_id=Os07g0194100;Oryzabase Gene Symbol Synonym(s)=SnRK1B%2C OsSnRK1B;Note=Similar to OSK2 (Fragment).;Transcript_evidence=AK063365 (DDBJ%2C Best hit);ORF_evidence=B9FVZ8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Kinase-associated KA1 (IPR001772),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (IPR015940),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-114-D08;Oryzabase=23625;Expression=AK063365;TENOR=Os07t0194100-01;KEGG=Os07t0194100-01 (EC:2.7.11.11)
Chr07	irgsp1_rep	five_prime_UTR	5102510	5102533	.	+	.	Parent=Os07t0194100-01
Chr07	irgsp1_rep	CDS	5102534	5102754	.	+	0	Parent=Os07t0194100-01
Chr07	irgsp1_rep	CDS	5102886	5103081	.	+	1	Parent=Os07t0194100-01
Chr07	irgsp1_rep	CDS	5103392	5103574	.	+	0	Parent=Os07t0194100-01
Chr07	irgsp1_rep	CDS	5103835	5103966	.	+	0	Parent=Os07t0194100-01
Chr07	irgsp1_rep	CDS	5104663	5104847	.	+	0	Parent=Os07t0194100-01
Chr07	irgsp1_rep	CDS	5104956	5105046	.	+	1	Parent=Os07t0194100-01
Chr07	irgsp1_rep	CDS	5105406	5105510	.	+	0	Parent=Os07t0194100-01
Chr07	irgsp1_rep	CDS	5106183	5106593	.	+	0	Parent=Os07t0194100-01
Chr07	irgsp1_rep	CDS	5106980	5107099	.	+	0	Parent=Os07t0194100-01
Chr07	irgsp1_rep	three_prime_UTR	5107100	5107297	.	+	.	Parent=Os07t0194100-01
Chr07	irgsp1_rep	mRNA	5109201	5109767	.	-	.	ID=Os07t0194300-01;Name=Os07t0194300-01;Locus_id=Os07g0194300;Note=Hypothetical protein.;Transcript_evidence=AK062637 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=001-105-D04;TENOR=Os07t0194300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	5109766	5109767	.	-	.	Parent=Os07t0194300-01
Chr07	irgsp1_rep	CDS	5109504	5109765	.	-	0	Parent=Os07t0194300-01
Chr07	irgsp1_rep	CDS	5109370	5109443	.	-	2	Parent=Os07t0194300-01
Chr07	irgsp1_rep	three_prime_UTR	5109201	5109369	.	-	.	Parent=Os07t0194300-01
Chr07	irgsp1_rep	mRNA	5114256	5116344	.	+	.	ID=Os07t0194351-01;Name=Os07t0194351-01;Locus_id=Os07g0194351;Note=Non-protein coding transcript.;Transcript_evidence=AK067485 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013110A15;TENOR=Os07t0194351-01
Chr07	irgsp1_rep	exon	5114256	5116344	.	+	.	Parent=Os07t0194351-01
Chr07	irgsp1_rep	mRNA	5115242	5115514	.	-	.	ID=Os07t0194400-00;Name=Os07t0194400-00;Locus_id=Os07g0194400;Oryzabase Gene Symbol Synonym(s)=OsCLE701%2C CLE701;Oryzabase Gene Name Synonym(s)=CLV3/ESR-related 701;Note=Conserved hypothetical protein.;Transcript_evidence=AB332080 (DDBJ%2C Best hit);ORF_evidence=NP_001175091.1 (RefSeq);Oryzabase=14250;TENOR=Os07t0194400-00;KEGG=Os07t0194400-00
Chr07	irgsp1_rep	CDS	5115242	5115514	.	-	0	Parent=Os07t0194400-00
Chr07	irgsp1_rep	mRNA	5116681	5119153	.	-	.	ID=Os07t0194500-01;Name=Os07t0194500-01;Locus_id=Os07g0194500;Note=2OG-Fe(II) oxygenase domain containing protein.;Transcript_evidence=AK121816 (DDBJ%2C Best hit);ORF_evidence=XP_002324024.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706),Molecular Function: L-ascorbic acid binding (GO:0031418);InterPro=Metridin-like ShK toxin (IPR003582),Oxoglutarate/iron-dependent oxygenase (IPR005123),Prolyl 4-hydroxylase%2C alpha subunit (IPR006620);NIAS_FLcDNA=J033098K22;Expression=AK121816;TENOR=Os07t0194500-01;KEGG=Os07t0194500-01 (EC:1.14.11.2)
Chr07	irgsp1_rep	five_prime_UTR	5119095	5119153	.	-	.	Parent=Os07t0194500-01
Chr07	irgsp1_rep	CDS	5118843	5119094	.	-	0	Parent=Os07t0194500-01
Chr07	irgsp1_rep	CDS	5118652	5118756	.	-	0	Parent=Os07t0194500-01
Chr07	irgsp1_rep	CDS	5117635	5117692	.	-	0	Parent=Os07t0194500-01
Chr07	irgsp1_rep	CDS	5117355	5117530	.	-	2	Parent=Os07t0194500-01
Chr07	irgsp1_rep	CDS	5117208	5117268	.	-	0	Parent=Os07t0194500-01
Chr07	irgsp1_rep	CDS	5116787	5117094	.	-	2	Parent=Os07t0194500-01
Chr07	irgsp1_rep	three_prime_UTR	5116681	5116786	.	-	.	Parent=Os07t0194500-01
Chr07	irgsp1_rep	mRNA	5116786	5118903	.	+	.	ID=Os07t0194550-00;Name=Os07t0194550-00;Locus_id=Os07g0194550;Note=Non-protein coding transcript.;Transcript_evidence=BT084776 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0194550-00
Chr07	irgsp1_rep	exon	5116786	5117516	.	+	.	Parent=Os07t0194550-00
Chr07	irgsp1_rep	exon	5117621	5117770	.	+	.	Parent=Os07t0194550-00
Chr07	irgsp1_rep	exon	5118619	5118903	.	+	.	Parent=Os07t0194550-00
Chr07	irgsp1_rep	mRNA	5120683	5121013	.	+	.	ID=Os07t0194675-00;Name=Os07t0194675-00;Locus_id=Os07g0194675;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK362546 (DDBJ);ORF_evidence=GeneMark;InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083);TENOR=Os07t0194675-00
Chr07	irgsp1_rep	CDS	5120683	5121013	.	+	0	Parent=Os07t0194675-00
Chr07	irgsp1_rep	mRNA	5128629	5132968	.	-	.	ID=Os07t0194800-01;Name=Os07t0194800-01;Locus_id=Os07g0194800;Note=Similar to galactosyltransferase/ transferase%2C transferring hexosyl groups.;Transcript_evidence=AK064329 (DDBJ%2C Best hit);ORF_evidence=B6SJ23 (UniProt);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: sugar binding (GO:0005529),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Galectin%2C carbohydrate recognition domain (IPR001079),Glycosyl transferase%2C family 31 (IPR002659),Concanavalin A-like lectin/glucanase (IPR008985),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320);NIAS_FLcDNA=002-107-F09;Expression=AK064329;TENOR=Os07t0194800-01;KEGG=Os07t0194800-01
Chr07	irgsp1_rep	five_prime_UTR	5132967	5132968	.	-	.	Parent=Os07t0194800-01
Chr07	irgsp1_rep	CDS	5132875	5132966	.	-	0	Parent=Os07t0194800-01
Chr07	irgsp1_rep	CDS	5132083	5132342	.	-	1	Parent=Os07t0194800-01
Chr07	irgsp1_rep	CDS	5130962	5131194	.	-	2	Parent=Os07t0194800-01
Chr07	irgsp1_rep	CDS	5130570	5130857	.	-	0	Parent=Os07t0194800-01
Chr07	irgsp1_rep	CDS	5130363	5130491	.	-	0	Parent=Os07t0194800-01
Chr07	irgsp1_rep	CDS	5130065	5130238	.	-	0	Parent=Os07t0194800-01
Chr07	irgsp1_rep	CDS	5129357	5129464	.	-	0	Parent=Os07t0194800-01
Chr07	irgsp1_rep	CDS	5129066	5129275	.	-	0	Parent=Os07t0194800-01
Chr07	irgsp1_rep	three_prime_UTR	5128629	5129065	.	-	.	Parent=Os07t0194800-01
Chr07	irgsp1_rep	mRNA	5128652	5132968	.	-	.	ID=Os07t0194800-02;Name=Os07t0194800-02;Locus_id=Os07g0194800;Note=Similar to Galactosyltransferase/ transferase%2C transferring hexosyl groups.;Transcript_evidence=AK100100 (DDBJ%2C Best hit),AK101244 (DDBJ%2C Best hit);ORF_evidence=B6SJ23 (UniProt);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: sugar binding (GO:0005529),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Galectin%2C carbohydrate recognition domain (IPR001079),Glycosyl transferase%2C family 31 (IPR002659),Concanavalin A-like lectin/glucanase (IPR008985),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320);NIAS_FLcDNA=J023004E20,J033032A07;TENOR=Os07t0194800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	5132909	5132968	.	-	.	Parent=Os07t0194800-02
Chr07	irgsp1_rep	CDS	5132083	5132908	.	-	0	Parent=Os07t0194800-02
Chr07	irgsp1_rep	CDS	5130962	5131194	.	-	2	Parent=Os07t0194800-02
Chr07	irgsp1_rep	CDS	5130570	5130857	.	-	0	Parent=Os07t0194800-02
Chr07	irgsp1_rep	CDS	5130363	5130491	.	-	0	Parent=Os07t0194800-02
Chr07	irgsp1_rep	CDS	5130065	5130238	.	-	0	Parent=Os07t0194800-02
Chr07	irgsp1_rep	CDS	5129357	5129464	.	-	0	Parent=Os07t0194800-02
Chr07	irgsp1_rep	CDS	5129066	5129275	.	-	0	Parent=Os07t0194800-02
Chr07	irgsp1_rep	three_prime_UTR	5128652	5129065	.	-	.	Parent=Os07t0194800-02
Chr07	irgsp1_rep	mRNA	5133446	5136515	.	-	.	ID=Os07t0194950-01;Name=Os07t0194950-01;Locus_id=Os07g0194950;Note=Hypothetical gene.;Transcript_evidence=AK288822 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090073F24;TENOR=Os07t0194950-01;KEGG=Os07t0194950-01
Chr07	irgsp1_rep	five_prime_UTR	5136248	5136515	.	-	.	Parent=Os07t0194950-01
Chr07	irgsp1_rep	CDS	5135822	5136247	.	-	0	Parent=Os07t0194950-01
Chr07	irgsp1_rep	three_prime_UTR	5133446	5135821	.	-	.	Parent=Os07t0194950-01
Chr07	irgsp1_rep	mRNA	5145085	5148743	.	-	.	ID=Os07t0195100-01;Name=Os07t0195100-01;Locus_id=Os07g0195100;Oryzabase Gene Symbol Synonym(s)=OsRab8B1;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab8B1;Note=Similar to Ras-related protein ARA-3.;Transcript_evidence=AK111552 (DDBJ%2C Best hit);ORF_evidence=B6SPA7 (UniProt);GO=Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225);NIAS_FLcDNA=J013052A20;Oryzabase=11095;Expression=AK111552;TENOR=Os07t0195100-01;KEGG=Os07t0195100-01
Chr07	irgsp1_rep	five_prime_UTR	5148743	5148743	.	-	.	Parent=Os07t0195100-01
Chr07	irgsp1_rep	CDS	5148493	5148742	.	-	0	Parent=Os07t0195100-01
Chr07	irgsp1_rep	CDS	5146979	5147048	.	-	2	Parent=Os07t0195100-01
Chr07	irgsp1_rep	CDS	5146789	5146889	.	-	1	Parent=Os07t0195100-01
Chr07	irgsp1_rep	CDS	5146156	5146221	.	-	2	Parent=Os07t0195100-01
Chr07	irgsp1_rep	CDS	5145986	5146080	.	-	2	Parent=Os07t0195100-01
Chr07	irgsp1_rep	CDS	5145839	5145901	.	-	0	Parent=Os07t0195100-01
Chr07	irgsp1_rep	CDS	5145618	5145713	.	-	0	Parent=Os07t0195100-01
Chr07	irgsp1_rep	CDS	5145457	5145537	.	-	0	Parent=Os07t0195100-01
Chr07	irgsp1_rep	three_prime_UTR	5145085	5145456	.	-	.	Parent=Os07t0195100-01
Chr07	irgsp1_rep	mRNA	5145129	5148676	.	-	.	ID=Os07t0195100-02;Name=Os07t0195100-02;Locus_id=Os07g0195100;Oryzabase Gene Symbol Synonym(s)=OsRab8B1;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab8B1;Note=Similar to Ras-related protein ARA-3.;Transcript_evidence=AK104473 (DDBJ%2C Best hit),AK104346 (DDBJ%2C Best hit);ORF_evidence=B6SPA7 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: intracellular protein transport (GO:0006886),Biological Process: nucleocytoplasmic transport (GO:0006913),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Cellular Component: membrane (GO:0016020),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Ran GTPase (IPR002041),Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C Ras type (IPR020849);NIAS_FLcDNA=006-301-E03,001-034-F04;Oryzabase=11095;Expression=AK104473;TENOR=Os07t0195100-02;KEGG=Os07t0195100-02
Chr07	irgsp1_rep	CDS	5148493	5148676	.	-	0	Parent=Os07t0195100-02
Chr07	irgsp1_rep	CDS	5146979	5147048	.	-	2	Parent=Os07t0195100-02
Chr07	irgsp1_rep	CDS	5146789	5146889	.	-	1	Parent=Os07t0195100-02
Chr07	irgsp1_rep	CDS	5146156	5146221	.	-	2	Parent=Os07t0195100-02
Chr07	irgsp1_rep	CDS	5145986	5146080	.	-	2	Parent=Os07t0195100-02
Chr07	irgsp1_rep	CDS	5145839	5145901	.	-	0	Parent=Os07t0195100-02
Chr07	irgsp1_rep	CDS	5145618	5145713	.	-	0	Parent=Os07t0195100-02
Chr07	irgsp1_rep	CDS	5145457	5145537	.	-	0	Parent=Os07t0195100-02
Chr07	irgsp1_rep	three_prime_UTR	5145129	5145456	.	-	.	Parent=Os07t0195100-02
Chr07	irgsp1_rep	mRNA	5151366	5155561	.	-	.	ID=Os07t0195200-01;Name=Os07t0195200-01;Locus_id=Os07g0195200;Note=Similar to ZG10 (Fragment).;Transcript_evidence=AK120963 (DDBJ%2C Best hit);ORF_evidence=NP_201068.1 (RefSeq);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: sugar binding (GO:0005529),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Galectin%2C carbohydrate recognition domain (IPR001079),Glycosyl transferase%2C family 31 (IPR002659),Concanavalin A-like lectin/glucanase (IPR008985),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320);NIAS_FLcDNA=J023039P07;Expression=AK120963;TENOR=Os07t0195200-01;KEGG=Os07t0195200-01
Chr07	irgsp1_rep	five_prime_UTR	5155365	5155561	.	-	.	Parent=Os07t0195200-01
Chr07	irgsp1_rep	CDS	5154509	5155364	.	-	0	Parent=Os07t0195200-01
Chr07	irgsp1_rep	CDS	5154189	5154418	.	-	2	Parent=Os07t0195200-01
Chr07	irgsp1_rep	CDS	5153739	5154026	.	-	0	Parent=Os07t0195200-01
Chr07	irgsp1_rep	CDS	5153528	5153656	.	-	0	Parent=Os07t0195200-01
Chr07	irgsp1_rep	CDS	5153253	5153426	.	-	0	Parent=Os07t0195200-01
Chr07	irgsp1_rep	CDS	5152503	5152610	.	-	0	Parent=Os07t0195200-01
Chr07	irgsp1_rep	CDS	5151909	5152115	.	-	0	Parent=Os07t0195200-01
Chr07	irgsp1_rep	three_prime_UTR	5151366	5151908	.	-	.	Parent=Os07t0195200-01
Chr07	irgsp1_rep	mRNA	5165197	5166518	.	-	.	ID=Os07t0195300-00;Name=Os07t0195300-00;Locus_id=Os07g0195300;Oryzabase Gene Symbol Synonym(s)=OsFbox347%2C Os_F0072;Oryzabase Gene Name Synonym(s)=F-box protein 347;Note=Hypothetical conserved gene.;Transcript_evidence=BT060703 (DDBJ);ORF_evidence=NP_001175092.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated domain%2C type 3 (IPR013187),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17123;TENOR=Os07t0195300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	5166514	5166518	.	-	.	Parent=Os07t0195300-00
Chr07	irgsp1_rep	CDS	5165197	5166513	.	-	0	Parent=Os07t0195300-00
Chr07	irgsp1_rep	mRNA	5166692	5170944	.	+	.	ID=Os07t0195350-01;Name=Os07t0195350-01;Locus_id=Os07g0195350;Note=Similar to ESTs AU075609(C63344).;Transcript_evidence=AK288580 (DDBJ%2C Best hit);ORF_evidence=Q9SNJ2 (UniProt);NIAS_FLcDNA=J090049H04;TENOR=Os07t0195350-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	5166692	5170308	.	+	.	Parent=Os07t0195350-01
Chr07	irgsp1_rep	CDS	5170309	5170569	.	+	0	Parent=Os07t0195350-01
Chr07	irgsp1_rep	three_prime_UTR	5170570	5170944	.	+	.	Parent=Os07t0195350-01
Chr07	irgsp1_rep	mRNA	5179090	5182750	.	-	.	ID=Os07t0195400-01;Name=Os07t0195400-01;Locus_id=Os07g0195400;Oryzabase Gene Symbol Synonym(s)=AGM1;Note=Phosphoacetylglucosamine mutase domain containing protein.;Transcript_evidence=AK069901 (DDBJ%2C Best hit);ORF_evidence=A7L4B1 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: phosphoacetylglucosamine mutase activity (GO:0004610),Molecular Function: intramolecular transferase activity%2C phosphotransferases (GO:0016868);InterPro=Alpha-D-phosphohexomutase%2C C-terminal (IPR005843),Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain I (IPR005844),Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain II (IPR005845),Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain III (IPR005846),Alpha-D-phosphohexomutase%2C alpha/beta/alpha I/II/III (IPR016055),Alpha-D-phosphohexomutase%2C conserved site (IPR016066),Phosphoacetylglucosamine mutase (IPR016657);NIAS_FLcDNA=J023034C14;Oryzabase=19684;Expression=AK069901;TENOR=Os07t0195400-01;KEGG=Os07t0195400-01 (EC:5.4.2.3)
Chr07	irgsp1_rep	five_prime_UTR	5182684	5182750	.	-	.	Parent=Os07t0195400-01
Chr07	irgsp1_rep	CDS	5182339	5182683	.	-	0	Parent=Os07t0195400-01
Chr07	irgsp1_rep	CDS	5181131	5181250	.	-	0	Parent=Os07t0195400-01
Chr07	irgsp1_rep	CDS	5180894	5181036	.	-	0	Parent=Os07t0195400-01
Chr07	irgsp1_rep	CDS	5180560	5180808	.	-	1	Parent=Os07t0195400-01
Chr07	irgsp1_rep	CDS	5180064	5180479	.	-	1	Parent=Os07t0195400-01
Chr07	irgsp1_rep	CDS	5179778	5179953	.	-	2	Parent=Os07t0195400-01
Chr07	irgsp1_rep	CDS	5179578	5179674	.	-	0	Parent=Os07t0195400-01
Chr07	irgsp1_rep	CDS	5179332	5179474	.	-	2	Parent=Os07t0195400-01
Chr07	irgsp1_rep	three_prime_UTR	5179090	5179331	.	-	.	Parent=Os07t0195400-01
Chr07	irgsp1_rep	mRNA	5212559	5215354	.	-	.	ID=Os07t0196100-01;Name=Os07t0196100-01;Locus_id=Os07g0196100;Note=Conserved hypothetical protein.;Transcript_evidence=AK065675 (DDBJ%2C Best hit);ORF_evidence=A2YJ48 (UniProt);NIAS_FLcDNA=J013035F21;TENOR=Os07t0196100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	5214976	5215354	.	-	0	Parent=Os07t0196100-01
Chr07	irgsp1_rep	CDS	5214610	5214728	.	-	2	Parent=Os07t0196100-01
Chr07	irgsp1_rep	three_prime_UTR	5212559	5214609	.	-	.	Parent=Os07t0196100-01
Chr07	irgsp1_rep	mRNA	5216029	5217014	.	-	.	ID=Os07t0196200-01;Name=Os07t0196200-01;Locus_id=Os07g0196200;Note=Protein of unknown function DUF3252 domain containing protein.;Transcript_evidence=AK070765 (DDBJ%2C Best hit);ORF_evidence=A2YJ49 (UniProt);InterPro=Protein of unknown function DUF3252 (IPR021659);NIAS_FLcDNA=J023071P20;Expression=AK070765;TENOR=Os07t0196200-01;KEGG=Os07t0196200-01
Chr07	irgsp1_rep	five_prime_UTR	5216967	5217014	.	-	.	Parent=Os07t0196200-01
Chr07	irgsp1_rep	CDS	5216229	5216966	.	-	0	Parent=Os07t0196200-01
Chr07	irgsp1_rep	three_prime_UTR	5216029	5216228	.	-	.	Parent=Os07t0196200-01
Chr07	irgsp1_rep	mRNA	5219438	5226721	.	+	.	ID=Os07t0196300-01;Name=Os07t0196300-01;Locus_id=Os07g0196300;Oryzabase Gene Symbol Synonym(s)=OsFbox348%2C Os_F0035;Oryzabase Gene Name Synonym(s)=F-box protein 348;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK101511 (DDBJ%2C Best hit);ORF_evidence=A2YJ50 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033046A10;Oryzabase=17124;Expression=AK101511;TENOR=Os07t0196300-01;KEGG=Os07t0196300-01
Chr07	irgsp1_rep	five_prime_UTR	5219438	5219520	.	+	.	Parent=Os07t0196300-01
Chr07	irgsp1_rep	five_prime_UTR	5219626	5219649	.	+	.	Parent=Os07t0196300-01
Chr07	irgsp1_rep	CDS	5219650	5220864	.	+	0	Parent=Os07t0196300-01
Chr07	irgsp1_rep	three_prime_UTR	5220865	5220868	.	+	.	Parent=Os07t0196300-01
Chr07	irgsp1_rep	three_prime_UTR	5226364	5226721	.	+	.	Parent=Os07t0196300-01
Chr07	irgsp1_rep	mRNA	5237177	5239545	.	-	.	ID=Os07t0196700-00;Name=Os07t0196700-00;Locus_id=Os07g0196700;Note=Protein of unknown function DUF3615 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001059121.1 (RefSeq);InterPro=Protein of unknown function DUF3615 (IPR022059);TENOR=Os07t0196700-00
Chr07	irgsp1_rep	CDS	5238892	5239545	.	-	0	Parent=Os07t0196700-00
Chr07	irgsp1_rep	CDS	5238521	5238776	.	-	0	Parent=Os07t0196700-00
Chr07	irgsp1_rep	CDS	5237177	5237427	.	-	2	Parent=Os07t0196700-00
Chr07	irgsp1_rep	mRNA	5249181	5251071	.	+	.	ID=Os07t0196900-01;Name=Os07t0196900-01;Locus_id=Os07g0196900;Oryzabase Gene Symbol Synonym(s)=OsFbox349%2C Os_F0252;Oryzabase Gene Name Synonym(s)=F-box protein 349;Note=Conserved hypothetical protein.;Transcript_evidence=AK069093 (DDBJ%2C Best hit),AK073823 (DDBJ%2C Best hit);ORF_evidence=B9FW07 (UniProt);NIAS_FLcDNA=J023008B20,J033069J02;Oryzabase=17125;TENOR=Os07t0196900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	5249181	5249181	.	+	.	Parent=Os07t0196900-01
Chr07	irgsp1_rep	CDS	5249182	5249646	.	+	0	Parent=Os07t0196900-01
Chr07	irgsp1_rep	three_prime_UTR	5249647	5249650	.	+	.	Parent=Os07t0196900-01
Chr07	irgsp1_rep	three_prime_UTR	5250720	5251071	.	+	.	Parent=Os07t0196900-01
Chr07	irgsp1_rep	mRNA	5253172	5254221	.	-	.	ID=Os07t0197000-00;Name=Os07t0197000-00;Locus_id=Os07g0197000;Note=F-box associated interaction domain domain containing protein.;Transcript_evidence=AK333784 (DDBJ);ORF_evidence=NP_001059123.2 (RefSeq);InterPro=F-box associated interaction domain (IPR017451);TENOR=Os07t0197000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	5254135	5254221	.	-	.	Parent=Os07t0197000-00
Chr07	irgsp1_rep	CDS	5253325	5254134	.	-	0	Parent=Os07t0197000-00
Chr07	irgsp1_rep	three_prime_UTR	5253172	5253324	.	-	.	Parent=Os07t0197000-00
Chr07	irgsp1_rep	mRNA	5258355	5259764	.	+	.	ID=Os07t0197100-01;Name=Os07t0197100-01;Locus_id=Os07g0197100;CGSNL Gene Symbol=HXK4;CGSNL Gene Name=HEXOKINASE-4;Oryzabase Gene Symbol Synonym(s)=OsHXK4;Oryzabase Gene Name Synonym(s)=Hexokinase 4;Note=Similar to Hexokinase-4%2C chloroplastic.;Transcript_evidence=AK059853 (DDBJ%2C Best hit);ORF_evidence=Q6Z398 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Hexokinase (IPR001312),Hexokinase%2C C-terminal (IPR022673);NIAS_FLcDNA=006-206-G12;Oryzabase=9005;Expression=AK059853;TENOR=Os07t0197100-01;KEGG=Os07t0197100-01 (EC:2.7.1.1)
Chr07	irgsp1_rep	five_prime_UTR	5258355	5258355	.	+	.	Parent=Os07t0197100-01
Chr07	irgsp1_rep	CDS	5258356	5258445	.	+	0	Parent=Os07t0197100-01
Chr07	irgsp1_rep	CDS	5258703	5258833	.	+	0	Parent=Os07t0197100-01
Chr07	irgsp1_rep	CDS	5258905	5258986	.	+	1	Parent=Os07t0197100-01
Chr07	irgsp1_rep	CDS	5259085	5259438	.	+	0	Parent=Os07t0197100-01
Chr07	irgsp1_rep	three_prime_UTR	5259439	5259764	.	+	.	Parent=Os07t0197100-01
Chr07	irgsp1_rep	mRNA	5263397	5273423	.	-	.	ID=Os07t0197300-00;Name=Os07t0197300-00;Locus_id=Os07g0197300;Note=Disease resistance protein domain containing protein.;Transcript_evidence=tplb0042l08 (Wheat FLcDNA);ORF_evidence=Q6Z397 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os07t0197300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	5273420	5273423	.	-	.	Parent=Os07t0197300-00
Chr07	irgsp1_rep	CDS	5272533	5273419	.	-	0	Parent=Os07t0197300-00
Chr07	irgsp1_rep	CDS	5263409	5265371	.	-	1	Parent=Os07t0197300-00
Chr07	irgsp1_rep	three_prime_UTR	5263397	5263408	.	-	.	Parent=Os07t0197300-00
Chr07	irgsp1_rep	mRNA	5276964	5279196	.	+	.	ID=Os07t0197400-01;Name=Os07t0197400-01;Locus_id=Os07g0197400;Note=Hypothetical gene.;Transcript_evidence=AK100445 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023090F16;Expression=AK100445;TENOR=Os07t0197400-01;KEGG=Os07t0197400-01
Chr07	irgsp1_rep	five_prime_UTR	5276964	5277185	.	+	.	Parent=Os07t0197400-01
Chr07	irgsp1_rep	CDS	5277186	5277410	.	+	0	Parent=Os07t0197400-01
Chr07	irgsp1_rep	three_prime_UTR	5277411	5279196	.	+	.	Parent=Os07t0197400-01
Chr07	irgsp1_rep	mRNA	5281095	5293886	.	-	.	ID=Os07t0197500-00;Name=Os07t0197500-00;Locus_id=Os07g0197500;Note=Disease resistance protein domain containing protein.;Transcript_evidence=tplb0042l08 (Wheat FLcDNA);ORF_evidence=Q6Z392 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os07t0197500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	5292973	5293886	.	-	0	Parent=Os07t0197500-00
Chr07	irgsp1_rep	CDS	5281163	5283113	.	-	1	Parent=Os07t0197500-00
Chr07	irgsp1_rep	three_prime_UTR	5281095	5281162	.	-	.	Parent=Os07t0197500-00
Chr07	irgsp1_rep	mRNA	5313828	5318057	.	+	.	ID=Os07t0198300-01;Name=Os07t0198300-01;Locus_id=Os07g0198300;Oryzabase Gene Symbol Synonym(s)=OsLTPG19%2C OsLTPg19;Oryzabase Gene Name Synonym(s)=GPI-anchored non-specific lipid transfer protein 19%2C type G nsLTP 19%2C type G non-specific lipid transfer protein 19;Note=Bifunctional inhibitor/plant lipid transfer protein/seed storage domain containing protein.;Transcript_evidence=AK071830 (DDBJ%2C Best hit),AK060951 (DDBJ%2C Best hit);ORF_evidence=NP_001152188.1 (RefSeq);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=J023117F24,006-201-F08;Oryzabase=13504;Expression=AK071830;TENOR=Os07t0198300-01;KEGG=Os07t0198300-01
Chr07	irgsp1_rep	five_prime_UTR	5313828	5313867	.	+	.	Parent=Os07t0198300-01
Chr07	irgsp1_rep	CDS	5313868	5314225	.	+	0	Parent=Os07t0198300-01
Chr07	irgsp1_rep	CDS	5315668	5315766	.	+	2	Parent=Os07t0198300-01
Chr07	irgsp1_rep	CDS	5317695	5317861	.	+	2	Parent=Os07t0198300-01
Chr07	irgsp1_rep	three_prime_UTR	5317862	5318057	.	+	.	Parent=Os07t0198300-01
Chr07	irgsp1_rep	mRNA	5327888	5328442	.	-	.	ID=Os07t0198650-00;Name=Os07t0198650-00;Locus_id=Os07g0198650;Note=Similar to Dehydration-responsive element-binding protein 1I.;Transcript_evidence=EF028763 (DDBJ);ORF_evidence=Q0J3Y6 (UniProt);TENOR=Os07t0198650-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	5328110	5328442	.	-	0	Parent=Os07t0198650-00
Chr07	irgsp1_rep	three_prime_UTR	5327888	5328109	.	-	.	Parent=Os07t0198650-00
Chr07	irgsp1_rep	mRNA	5348937	5353611	.	-	.	ID=Os07t0199000-01;Name=Os07t0199000-01;Locus_id=Os07g0199000;Note=Similar to OSIGBa0126B18.3 protein.;Transcript_evidence=AK242778 (DDBJ%2C Best hit);ORF_evidence=Q01K15 (UniProt);NIAS_FLcDNA=J090054J19;TENOR=Os07t0199000-01;KEGG=Os07t0199000-01
Chr07	irgsp1_rep	five_prime_UTR	5353540	5353611	.	-	.	Parent=Os07t0199000-01
Chr07	irgsp1_rep	CDS	5353391	5353539	.	-	0	Parent=Os07t0199000-01
Chr07	irgsp1_rep	CDS	5352957	5353310	.	-	1	Parent=Os07t0199000-01
Chr07	irgsp1_rep	CDS	5352468	5352611	.	-	1	Parent=Os07t0199000-01
Chr07	irgsp1_rep	CDS	5352312	5352395	.	-	1	Parent=Os07t0199000-01
Chr07	irgsp1_rep	CDS	5352126	5352163	.	-	1	Parent=Os07t0199000-01
Chr07	irgsp1_rep	CDS	5351974	5352018	.	-	2	Parent=Os07t0199000-01
Chr07	irgsp1_rep	CDS	5351566	5351641	.	-	2	Parent=Os07t0199000-01
Chr07	irgsp1_rep	CDS	5350957	5351045	.	-	1	Parent=Os07t0199000-01
Chr07	irgsp1_rep	CDS	5350765	5350854	.	-	2	Parent=Os07t0199000-01
Chr07	irgsp1_rep	CDS	5349955	5350109	.	-	2	Parent=Os07t0199000-01
Chr07	irgsp1_rep	CDS	5349269	5349328	.	-	0	Parent=Os07t0199000-01
Chr07	irgsp1_rep	three_prime_UTR	5348937	5349268	.	-	.	Parent=Os07t0199000-01
Chr07	irgsp1_rep	mRNA	5365996	5366643	.	-	.	ID=Os07t0199350-00;Name=Os07t0199350-00;Locus_id=Os07g0199350;Note=Similar to HAT family dimerisation domain containing protein.;Transcript_evidence=CT836148 (DDBJ%2C Best hit);ORF_evidence=Q2R4E7 (UniProt);TENOR=Os07t0199350-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	5366183	5366643	.	-	.	Parent=Os07t0199350-00
Chr07	irgsp1_rep	CDS	5366060	5366182	.	-	0	Parent=Os07t0199350-00
Chr07	irgsp1_rep	three_prime_UTR	5365996	5366059	.	-	.	Parent=Os07t0199350-00
Chr07	irgsp1_rep	mRNA	5418770	5426572	.	-	.	ID=Os07t0200000-01;Name=Os07t0200000-01;Locus_id=Os07g0200000;Note=Vps51/Vps67 domain containing protein.;Transcript_evidence=AK102401 (DDBJ%2C Best hit);ORF_evidence=A2YJ70 (UniProt);InterPro=Vacuolar protein sorting-associated protein 51 (IPR014812),Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=J033092J15;Expression=AK102401;TENOR=Os07t0200000-01;KEGG=Os07t0200000-01
Chr07	irgsp1_rep	five_prime_UTR	5426300	5426572	.	-	.	Parent=Os07t0200000-01
Chr07	irgsp1_rep	CDS	5426072	5426299	.	-	0	Parent=Os07t0200000-01
Chr07	irgsp1_rep	CDS	5425131	5425228	.	-	0	Parent=Os07t0200000-01
Chr07	irgsp1_rep	CDS	5423663	5424704	.	-	1	Parent=Os07t0200000-01
Chr07	irgsp1_rep	CDS	5422161	5422673	.	-	0	Parent=Os07t0200000-01
Chr07	irgsp1_rep	CDS	5421456	5421644	.	-	0	Parent=Os07t0200000-01
Chr07	irgsp1_rep	CDS	5421249	5421382	.	-	0	Parent=Os07t0200000-01
Chr07	irgsp1_rep	CDS	5419094	5419256	.	-	1	Parent=Os07t0200000-01
Chr07	irgsp1_rep	three_prime_UTR	5418770	5419093	.	-	.	Parent=Os07t0200000-01
Chr07	irgsp1_rep	mRNA	5418768	5424207	.	-	.	ID=Os07t0200000-02;Name=Os07t0200000-02;Locus_id=Os07g0200000;Note=Similar to predicted protein.;Transcript_evidence=AK060217 (DDBJ%2C Best hit);ORF_evidence=A2YJ70 (UniProt);InterPro=Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=001-002-E03;Expression=AK060217;TENOR=Os07t0200000-02;KEGG=Os07t0200000-02
Chr07	irgsp1_rep	five_prime_UTR	5424206	5424207	.	-	.	Parent=Os07t0200000-02
Chr07	irgsp1_rep	CDS	5423663	5424205	.	-	0	Parent=Os07t0200000-02
Chr07	irgsp1_rep	CDS	5422161	5422673	.	-	0	Parent=Os07t0200000-02
Chr07	irgsp1_rep	CDS	5421456	5421644	.	-	0	Parent=Os07t0200000-02
Chr07	irgsp1_rep	CDS	5421249	5421382	.	-	0	Parent=Os07t0200000-02
Chr07	irgsp1_rep	CDS	5419094	5419256	.	-	1	Parent=Os07t0200000-02
Chr07	irgsp1_rep	three_prime_UTR	5418768	5419093	.	-	.	Parent=Os07t0200000-02
Chr07	irgsp1_rep	mRNA	5431481	5436147	.	+	.	ID=Os07t0200500-00;Name=Os07t0200500-00;Locus_id=Os07g0200500;Note=Similar to OSIGBa0126B18.3 protein.;Transcript_evidence=AK242778 (DDBJ%2C Secondary hit);ORF_evidence=Q01K15 (UniProt);TENOR=Os07t0200500-00;KEGG=Os07t0200500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	5431481	5431552	.	+	.	Parent=Os07t0200500-00
Chr07	irgsp1_rep	CDS	5431553	5431701	.	+	0	Parent=Os07t0200500-00
Chr07	irgsp1_rep	CDS	5431782	5432135	.	+	1	Parent=Os07t0200500-00
Chr07	irgsp1_rep	CDS	5432481	5432624	.	+	1	Parent=Os07t0200500-00
Chr07	irgsp1_rep	CDS	5432697	5432780	.	+	1	Parent=Os07t0200500-00
Chr07	irgsp1_rep	CDS	5432929	5432966	.	+	1	Parent=Os07t0200500-00
Chr07	irgsp1_rep	CDS	5433074	5433118	.	+	2	Parent=Os07t0200500-00
Chr07	irgsp1_rep	CDS	5433451	5433523	.	+	2	Parent=Os07t0200500-00
Chr07	irgsp1_rep	CDS	5434044	5434135	.	+	1	Parent=Os07t0200500-00
Chr07	irgsp1_rep	CDS	5434238	5434327	.	+	2	Parent=Os07t0200500-00
Chr07	irgsp1_rep	CDS	5434983	5435137	.	+	2	Parent=Os07t0200500-00
Chr07	irgsp1_rep	CDS	5435764	5435823	.	+	0	Parent=Os07t0200500-00
Chr07	irgsp1_rep	three_prime_UTR	5435824	5436147	.	+	.	Parent=Os07t0200500-00
Chr07	irgsp1_rep	mRNA	5440357	5445784	.	+	.	ID=Os07t0200700-01;Name=Os07t0200700-01;Locus_id=Os07g0200700;Note=Similar to Squalene synthase (EC 2.5.1.21).;Transcript_evidence=AK063341 (DDBJ%2C Best hit);ORF_evidence=NP_001104839.1 (RefSeq);GO=Biological Process: lipid biosynthetic process (GO:0008610),Biological Process: biosynthetic process (GO:0009058),Cellular Component: integral to membrane (GO:0016021),Molecular Function: farnesyl-diphosphate farnesyltransferase activity (GO:0004310),Molecular Function: transferase activity (GO:0016740),Molecular Function: transferase activity%2C transferring alkyl or aryl (other than methyl) groups (GO:0016765);InterPro=Squalene/phytoene synthase (IPR002060),Farnesyl-diphosphate farnesyltransferase (IPR006449),Terpenoid synthase (IPR008949),Squalene/phytoene synthase%2C conserved site (IPR019845);NIAS_FLcDNA=001-114-B01;Expression=AK063341;TENOR=Os07t0200700-01;KEGG=Os07t0200700-01 (EC:2.5.1.21)
Chr07	irgsp1_rep	five_prime_UTR	5440357	5440465	.	+	.	Parent=Os07t0200700-01
Chr07	irgsp1_rep	CDS	5440466	5440666	.	+	0	Parent=Os07t0200700-01
Chr07	irgsp1_rep	CDS	5440791	5440833	.	+	0	Parent=Os07t0200700-01
Chr07	irgsp1_rep	CDS	5441520	5441609	.	+	2	Parent=Os07t0200700-01
Chr07	irgsp1_rep	CDS	5441711	5441786	.	+	2	Parent=Os07t0200700-01
Chr07	irgsp1_rep	CDS	5442283	5442352	.	+	1	Parent=Os07t0200700-01
Chr07	irgsp1_rep	CDS	5443109	5443252	.	+	0	Parent=Os07t0200700-01
Chr07	irgsp1_rep	CDS	5443395	5443499	.	+	0	Parent=Os07t0200700-01
Chr07	irgsp1_rep	CDS	5443724	5443870	.	+	0	Parent=Os07t0200700-01
Chr07	irgsp1_rep	CDS	5444380	5444455	.	+	0	Parent=Os07t0200700-01
Chr07	irgsp1_rep	CDS	5444749	5444837	.	+	2	Parent=Os07t0200700-01
Chr07	irgsp1_rep	CDS	5445240	5445331	.	+	0	Parent=Os07t0200700-01
Chr07	irgsp1_rep	CDS	5445407	5445446	.	+	1	Parent=Os07t0200700-01
Chr07	irgsp1_rep	CDS	5445534	5445593	.	+	0	Parent=Os07t0200700-01
Chr07	irgsp1_rep	three_prime_UTR	5445594	5445784	.	+	.	Parent=Os07t0200700-01
Chr07	irgsp1_rep	mRNA	5446267	5446790	.	-	.	ID=Os07t0200801-00;Name=Os07t0200801-00;Locus_id=Os07g0200801;Note=Hypothetical conserved gene.;Transcript_evidence=BT068195 (DDBJ);ORF_evidence=A2YJ74 (UniProt);TENOR=Os07t0200801-00;KEGG=Os07t0200801-00
Chr07	irgsp1_rep	CDS	5446302	5446790	.	-	0	Parent=Os07t0200801-00
Chr07	irgsp1_rep	three_prime_UTR	5446267	5446301	.	-	.	Parent=Os07t0200801-00
Chr07	irgsp1_rep	mRNA	5449457	5450573	.	+	.	ID=Os07t0200900-01;Name=Os07t0200900-01;Locus_id=Os07g0200900;Note=Similar to Protein SHORT-ROOT 2.;Transcript_evidence=AK061082 (DDBJ%2C Best hit);ORF_evidence=Q75I13 (UniProt);NIAS_FLcDNA=006-206-F07;TENOR=Os07t0200900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	5449457	5450144	.	+	.	Parent=Os07t0200900-01
Chr07	irgsp1_rep	CDS	5450145	5450297	.	+	0	Parent=Os07t0200900-01
Chr07	irgsp1_rep	three_prime_UTR	5450298	5450573	.	+	.	Parent=Os07t0200900-01
Chr07	irgsp1_rep	mRNA	5452173	5459549	.	+	.	ID=Os07t0201100-01;Name=Os07t0201100-01;Locus_id=Os07g0201100;Note=Similar to Coatomer gamma subunit (Gamma-coat protein) (Gamma-COP).;Transcript_evidence=AK100095 (DDBJ%2C Best hit);ORF_evidence=B9FW22 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: Golgi-associated vesicle (GO:0005798),Cellular Component: membrane coat (GO:0030117),Cellular Component: COPI vesicle coat (GO:0030126),Molecular Function: structural molecule activity (GO:0005198),Molecular Function: binding (GO:0005488);InterPro=Clathrin/coatomer adaptor%2C adaptin-like%2C N-terminal (IPR002553),Coatomer/calthrin adaptor appendage%2C C-terminal subdomain (IPR009028),Armadillo-like helical (IPR011989),Coatomer%2C gamma subunit%2C appendage%2C Ig-like subdomain (IPR013040),Coatomer/clathrin adaptor appendage%2C Ig-like subdomain (IPR013041),Coatomer%2C gamma subunit %2C appendage (IPR014863),Clathrin alpha-adaptin/coatomer adaptor%2C appendage%2C C-terminal subdomain (IPR015873),Armadillo-type fold (IPR016024),Coatomer%2C gamma subunit (IPR017106);NIAS_FLcDNA=J023004B12;Expression=AK100095;TENOR=Os07t0201100-01;KEGG=Os07t0201100-01
Chr07	irgsp1_rep	five_prime_UTR	5452173	5452400	.	+	.	Parent=Os07t0201100-01
Chr07	irgsp1_rep	CDS	5452401	5452449	.	+	0	Parent=Os07t0201100-01
Chr07	irgsp1_rep	CDS	5452684	5452781	.	+	2	Parent=Os07t0201100-01
Chr07	irgsp1_rep	CDS	5452876	5452926	.	+	0	Parent=Os07t0201100-01
Chr07	irgsp1_rep	CDS	5453592	5453705	.	+	0	Parent=Os07t0201100-01
Chr07	irgsp1_rep	CDS	5453786	5453986	.	+	0	Parent=Os07t0201100-01
Chr07	irgsp1_rep	CDS	5454088	5454189	.	+	0	Parent=Os07t0201100-01
Chr07	irgsp1_rep	CDS	5454727	5454834	.	+	0	Parent=Os07t0201100-01
Chr07	irgsp1_rep	CDS	5454901	5455134	.	+	0	Parent=Os07t0201100-01
Chr07	irgsp1_rep	CDS	5456098	5456348	.	+	0	Parent=Os07t0201100-01
Chr07	irgsp1_rep	CDS	5456440	5456611	.	+	1	Parent=Os07t0201100-01
Chr07	irgsp1_rep	CDS	5457013	5457168	.	+	0	Parent=Os07t0201100-01
Chr07	irgsp1_rep	CDS	5457253	5457303	.	+	0	Parent=Os07t0201100-01
Chr07	irgsp1_rep	CDS	5457440	5457580	.	+	0	Parent=Os07t0201100-01
Chr07	irgsp1_rep	CDS	5457662	5457862	.	+	0	Parent=Os07t0201100-01
Chr07	irgsp1_rep	CDS	5457953	5458084	.	+	0	Parent=Os07t0201100-01
Chr07	irgsp1_rep	CDS	5458156	5458329	.	+	0	Parent=Os07t0201100-01
Chr07	irgsp1_rep	CDS	5458603	5458842	.	+	0	Parent=Os07t0201100-01
Chr07	irgsp1_rep	CDS	5459061	5459255	.	+	0	Parent=Os07t0201100-01
Chr07	irgsp1_rep	three_prime_UTR	5459256	5459549	.	+	.	Parent=Os07t0201100-01
Chr07	irgsp1_rep	mRNA	5463119	5464797	.	+	.	ID=Os07t0201300-00;Name=Os07t0201300-00;Locus_id=Os07g0201300;Note=UDP-glucuronosyl/UDP-glucosyltransferase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001175095.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os07t0201300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	5463119	5463574	.	+	0	Parent=Os07t0201300-00
Chr07	irgsp1_rep	CDS	5463742	5464137	.	+	0	Parent=Os07t0201300-00
Chr07	irgsp1_rep	CDS	5464579	5464797	.	+	0	Parent=Os07t0201300-00
Chr07	irgsp1_rep	mRNA	5481538	5482455	.	+	.	ID=Os07t0201500-00;Name=Os07t0201500-00;Locus_id=Os07g0201500;Note=UDP-glucuronosyl/UDP-glucosyltransferase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001059133.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os07t0201500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	5481538	5482455	.	+	0	Parent=Os07t0201500-00
Chr07	irgsp1_rep	mRNA	5490710	5492857	.	+	.	ID=Os07t0201800-00;Name=Os07t0201800-00;Locus_id=Os07g0201800;Note=UDP-glucuronosyl/UDP-glucosyltransferase domain containing protein.;Transcript_evidence=FP092475 (DDBJ);ORF_evidence=B9FW23 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os07t0201800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	5490710	5491191	.	+	0	Parent=Os07t0201800-00
Chr07	irgsp1_rep	CDS	5491948	5492857	.	+	1	Parent=Os07t0201800-00
Chr07	irgsp1_rep	mRNA	5497490	5498989	.	+	.	ID=Os07t0202000-00;Name=Os07t0202000-00;Locus_id=Os07g0202000;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=tplb0003d11 (Wheat FLcDNA);ORF_evidence=NP_001059134.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os07t0202000-00;KEGG=Os07t0202000-00
Chr07	irgsp1_rep	CDS	5497490	5498989	.	+	0	Parent=Os07t0202000-00
Chr07	irgsp1_rep	mRNA	5500383	5506489	.	-	.	ID=Os07t0202100-01;Name=Os07t0202100-01;Locus_id=Os07g0202100;Oryzabase Gene Symbol Synonym(s)=OsRH52B%2C RH52B%2C RBP-100;Oryzabase Gene Name Synonym(s)=RNA helices 52B%2C DEAD-box ATP-dependent RNA helices 52B%2C RNA-binding RBP-100;Note=Similar to ATP-dependent RNA helicase ded1.;Transcript_evidence=AK101736 (DDBJ%2C Best hit);ORF_evidence=Q6Z4K6 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=J033061I19;Oryzabase=19159;Expression=AK101736;TENOR=Os07t0202100-01;KEGG=Os07t0202100-01 (EC:3.6.4.13)
Chr07	irgsp1_rep	five_prime_UTR	5506210	5506489	.	-	.	Parent=Os07t0202100-01
Chr07	irgsp1_rep	five_prime_UTR	5505991	5506035	.	-	.	Parent=Os07t0202100-01
Chr07	irgsp1_rep	CDS	5505205	5505990	.	-	0	Parent=Os07t0202100-01
Chr07	irgsp1_rep	CDS	5505026	5505109	.	-	0	Parent=Os07t0202100-01
Chr07	irgsp1_rep	CDS	5503799	5504041	.	-	0	Parent=Os07t0202100-01
Chr07	irgsp1_rep	CDS	5502412	5502579	.	-	0	Parent=Os07t0202100-01
Chr07	irgsp1_rep	CDS	5502133	5502246	.	-	0	Parent=Os07t0202100-01
Chr07	irgsp1_rep	CDS	5500651	5501172	.	-	0	Parent=Os07t0202100-01
Chr07	irgsp1_rep	three_prime_UTR	5500383	5500650	.	-	.	Parent=Os07t0202100-01
Chr07	irgsp1_rep	mRNA	5500394	5503824	.	-	.	ID=Os07t0202100-02;Name=Os07t0202100-02;Locus_id=Os07g0202100;Oryzabase Gene Symbol Synonym(s)=OsRH52B%2C RH52B%2C RBP-100;Oryzabase Gene Name Synonym(s)=RNA helices 52B%2C DEAD-box ATP-dependent RNA helices 52B%2C RNA-binding RBP-100;Note=Similar to DEAD-box ATP-dependent RNA helicase 52B.;Transcript_evidence=AK059814 (DDBJ%2C Best hit);ORF_evidence=Q6Z4K6 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524);InterPro=Helicase%2C C-terminal (IPR001650);NIAS_FLcDNA=006-205-B10;Oryzabase=19159;Expression=AK059814;TENOR=Os07t0202100-02;KEGG=Os07t0202100-02 (EC:3.6.4.13)
Chr07	irgsp1_rep	five_prime_UTR	5503823	5503824	.	-	.	Parent=Os07t0202100-02
Chr07	irgsp1_rep	CDS	5503799	5503822	.	-	0	Parent=Os07t0202100-02
Chr07	irgsp1_rep	CDS	5502412	5502579	.	-	0	Parent=Os07t0202100-02
Chr07	irgsp1_rep	CDS	5502133	5502246	.	-	0	Parent=Os07t0202100-02
Chr07	irgsp1_rep	CDS	5500651	5501172	.	-	0	Parent=Os07t0202100-02
Chr07	irgsp1_rep	three_prime_UTR	5500394	5500650	.	-	.	Parent=Os07t0202100-02
Chr07	irgsp1_rep	mRNA	5508065	5510602	.	-	.	ID=Os07t0202300-01;Name=Os07t0202300-01;Locus_id=Os07g0202300;Note=Similar to Mitosis protein dim1.;Transcript_evidence=AK243394 (DDBJ%2C Best hit);ORF_evidence=B6T4C6 (UniProt);GO=Biological Process: mitosis (GO:0007067),Cellular Component: spliceosomal complex (GO:0005681);InterPro=mRNA splicing factor%2C thioredoxin-like U5 snRNP (IPR004123),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=J100064D20;TENOR=Os07t0202300-01;KEGG=Os07t0202300-01
Chr07	irgsp1_rep	five_prime_UTR	5510506	5510602	.	-	.	Parent=Os07t0202300-01
Chr07	irgsp1_rep	CDS	5510386	5510505	.	-	0	Parent=Os07t0202300-01
Chr07	irgsp1_rep	CDS	5508439	5508747	.	-	0	Parent=Os07t0202300-01
Chr07	irgsp1_rep	three_prime_UTR	5508065	5508438	.	-	.	Parent=Os07t0202300-01
Chr07	irgsp1_rep	mRNA	5507023	5507708	.	+	.	ID=Os07t0202400-01;Name=Os07t0202400-01;Locus_id=Os07g0202400;Note=Conserved hypothetical protein.;Transcript_evidence=AK063024 (DDBJ%2C Best hit);ORF_evidence=B8B880 (UniProt);NIAS_FLcDNA=001-110-B08;Expression=AK063024;TENOR=Os07t0202400-01;KEGG=Os07t0202400-01
Chr07	irgsp1_rep	five_prime_UTR	5507023	5507244	.	+	.	Parent=Os07t0202400-01
Chr07	irgsp1_rep	CDS	5507245	5507553	.	+	0	Parent=Os07t0202400-01
Chr07	irgsp1_rep	three_prime_UTR	5507554	5507708	.	+	.	Parent=Os07t0202400-01
Chr07	irgsp1_rep	mRNA	5521609	5526641	.	+	.	ID=Os07t0202900-01;Name=Os07t0202900-01;Locus_id=Os07g0202900;Note=Similar to mitochondrial 28S ribosomal protein S29-related.;Transcript_evidence=AK065624 (DDBJ%2C Best hit);ORF_evidence=NP_173131.1 (RefSeq);InterPro=Ribosomal protein S23/S29%2C mitochondrial (IPR019368);NIAS_FLcDNA=J013031M04;Expression=AK065624;TENOR=Os07t0202900-01;KEGG=Os07t0202900-01
Chr07	irgsp1_rep	CDS	5521609	5521802	.	+	0	Parent=Os07t0202900-01
Chr07	irgsp1_rep	CDS	5522597	5522760	.	+	1	Parent=Os07t0202900-01
Chr07	irgsp1_rep	CDS	5523127	5523332	.	+	2	Parent=Os07t0202900-01
Chr07	irgsp1_rep	CDS	5524793	5525047	.	+	0	Parent=Os07t0202900-01
Chr07	irgsp1_rep	CDS	5525137	5525223	.	+	0	Parent=Os07t0202900-01
Chr07	irgsp1_rep	CDS	5525664	5525836	.	+	0	Parent=Os07t0202900-01
Chr07	irgsp1_rep	CDS	5525982	5526090	.	+	1	Parent=Os07t0202900-01
Chr07	irgsp1_rep	three_prime_UTR	5526091	5526098	.	+	.	Parent=Os07t0202900-01
Chr07	irgsp1_rep	three_prime_UTR	5526239	5526641	.	+	.	Parent=Os07t0202900-01
Chr07	irgsp1_rep	mRNA	5546812	5548245	.	+	.	ID=Os07t0203275-00;Name=Os07t0203275-00;Locus_id=Os07g0203275;Note=Ribosomal protein S1%2C RNA-binding domain domain containing protein.;Transcript_evidence=AK373987 (DDBJ);ORF_evidence=B9FW29 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=Ribosomal protein S1%2C RNA-binding domain (IPR003029),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),RNA-binding domain%2C S1 (IPR022967);TENOR=Os07t0203275-00
Chr07	irgsp1_rep	CDS	5546812	5547016	.	+	0	Parent=Os07t0203275-00
Chr07	irgsp1_rep	CDS	5547182	5547247	.	+	2	Parent=Os07t0203275-00
Chr07	irgsp1_rep	CDS	5547580	5547686	.	+	2	Parent=Os07t0203275-00
Chr07	irgsp1_rep	CDS	5547758	5547838	.	+	0	Parent=Os07t0203275-00
Chr07	irgsp1_rep	CDS	5547912	5547986	.	+	0	Parent=Os07t0203275-00
Chr07	irgsp1_rep	CDS	5548072	5548245	.	+	0	Parent=Os07t0203275-00
Chr07	irgsp1_rep	mRNA	5552535	5557133	.	+	.	ID=Os07t0203300-01;Name=Os07t0203300-01;Locus_id=Os07g0203300;Note=Nucleic acid-binding%2C OB-fold domain containing protein.;Transcript_evidence=AK103882 (DDBJ%2C Best hit);ORF_evidence=Q7XB75 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Biological Process: mRNA processing (GO:0006397),Cellular Component: intracellular (GO:0005622),Cellular Component: nucleus (GO:0005634),Molecular Function: RNA binding (GO:0003723),Molecular Function: binding (GO:0005488);InterPro=Ribosomal protein S1%2C RNA-binding domain (IPR003029),RNA-processing protein%2C HAT helix (IPR003107),Suppressor of forked (IPR008847),Tetratricopeptide-like helical (IPR011990),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),RNA-binding domain%2C S1 (IPR022967);NIAS_FLcDNA=J033149P22;Expression=AK103882;TENOR=Os07t0203300-01;KEGG=Os07t0203300-01
Chr07	irgsp1_rep	CDS	5552535	5552926	.	+	0	Parent=Os07t0203300-01
Chr07	irgsp1_rep	CDS	5553275	5553335	.	+	1	Parent=Os07t0203300-01
Chr07	irgsp1_rep	CDS	5553722	5553867	.	+	0	Parent=Os07t0203300-01
Chr07	irgsp1_rep	CDS	5553952	5554135	.	+	1	Parent=Os07t0203300-01
Chr07	irgsp1_rep	CDS	5554211	5554307	.	+	0	Parent=Os07t0203300-01
Chr07	irgsp1_rep	CDS	5554449	5554779	.	+	2	Parent=Os07t0203300-01
Chr07	irgsp1_rep	CDS	5554871	5555047	.	+	1	Parent=Os07t0203300-01
Chr07	irgsp1_rep	CDS	5555419	5555515	.	+	1	Parent=Os07t0203300-01
Chr07	irgsp1_rep	CDS	5555590	5555745	.	+	0	Parent=Os07t0203300-01
Chr07	irgsp1_rep	CDS	5555810	5556046	.	+	0	Parent=Os07t0203300-01
Chr07	irgsp1_rep	CDS	5556119	5556202	.	+	0	Parent=Os07t0203300-01
Chr07	irgsp1_rep	CDS	5556639	5556746	.	+	0	Parent=Os07t0203300-01
Chr07	irgsp1_rep	three_prime_UTR	5556747	5557133	.	+	.	Parent=Os07t0203300-01
Chr07	irgsp1_rep	mRNA	5565331	5566233	.	-	.	ID=Os07t0203500-01;Name=Os07t0203500-01;Locus_id=Os07g0203500;Note=Conserved hypothetical protein.;Transcript_evidence=AK242509 (DDBJ%2C Best hit);ORF_evidence=NP_001175098.1 (RefSeq);NIAS_FLcDNA=J080310O09;TENOR=Os07t0203500-01;KEGG=Os07t0203500-01
Chr07	irgsp1_rep	five_prime_UTR	5566016	5566233	.	-	.	Parent=Os07t0203500-01
Chr07	irgsp1_rep	CDS	5565488	5566015	.	-	0	Parent=Os07t0203500-01
Chr07	irgsp1_rep	three_prime_UTR	5565331	5565487	.	-	.	Parent=Os07t0203500-01
Chr07	irgsp1_rep	mRNA	5567712	5580522	.	-	.	ID=Os07t0203700-01;Name=Os07t0203700-01;Locus_id=Os07g0203700;RAP-DB Gene Symbol Synonym(s)=SPL5%2C SF3b3;RAP-DB Gene Name Synonym(s)=spotted leaf 5%2C splicing factor 3b subunit 3;CGSNL Gene Symbol=SPL5;CGSNL Gene Name=SPOTTED LEAF 5;Oryzabase Gene Symbol Synonym(s)=spl5(bl6%2Cspl5-1)%2C bl6%2C spl5%2C SF3b3;Oryzabase Gene Name Synonym(s)=spotted leaf5%2C spotted leaf 5%2C spotted leaf-5%2C splicing factor 3b subunit 3;Note=Putative splicing factor 3b subunit 3 (SF3b3)%2C Regulation of cell death and resistance responses;Transcript_evidence=KC128660,AK064566 (truncated),AK100154 (truncated);ORF_evidence=Q7X971;GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515),Cellular Component: nucleus (GO:0005634);InterPro=WD40/YVTN repeat-like-containing domain superfamily (IPR015943),Cleavage/polyadenylation specificity factor%2C A subunit%2C C-terminal (IPR004871);NIAS_FLcDNA=002-112-D04 (truncated),J023018F09 (truncated);Manual Curation=July 21%2C 2020;Literature_PMID=24280096,DOI:10.1007/s11032-011-9677-4;Oryzabase=812;Expression=AK064566,AK100154;TENOR=Os07t0203700-01,Os07t0203800-01;KEGG=Os07t0203700-01,Os07t0203800-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	5580434	5580522	.	-	.	Parent=Os07t0203700-01
Chr07	irgsp1_rep	CDS	5580188	5580433	.	-	0	Parent=Os07t0203700-01
Chr07	irgsp1_rep	CDS	5579160	5579294	.	-	0	Parent=Os07t0203700-01
Chr07	irgsp1_rep	CDS	5578960	5579039	.	-	0	Parent=Os07t0203700-01
Chr07	irgsp1_rep	CDS	5578272	5578355	.	-	1	Parent=Os07t0203700-01
Chr07	irgsp1_rep	CDS	5577367	5577455	.	-	1	Parent=Os07t0203700-01
Chr07	irgsp1_rep	CDS	5577087	5577222	.	-	2	Parent=Os07t0203700-01
Chr07	irgsp1_rep	CDS	5575093	5576989	.	-	1	Parent=Os07t0203700-01
Chr07	irgsp1_rep	CDS	5572932	5573242	.	-	0	Parent=Os07t0203700-01
Chr07	irgsp1_rep	CDS	5572154	5572466	.	-	1	Parent=Os07t0203700-01
Chr07	irgsp1_rep	CDS	5571434	5571589	.	-	0	Parent=Os07t0203700-01
Chr07	irgsp1_rep	CDS	5571197	5571335	.	-	0	Parent=Os07t0203700-01
Chr07	irgsp1_rep	CDS	5570707	5570783	.	-	2	Parent=Os07t0203700-01
Chr07	irgsp1_rep	CDS	5568923	5569044	.	-	0	Parent=Os07t0203700-01
Chr07	irgsp1_rep	CDS	5568303	5568411	.	-	1	Parent=Os07t0203700-01
Chr07	irgsp1_rep	CDS	5568049	5568222	.	-	0	Parent=Os07t0203700-01
Chr07	irgsp1_rep	three_prime_UTR	5567712	5568048	.	-	.	Parent=Os07t0203700-01
Chr07	irgsp1_rep	mRNA	5582400	5584106	.	+	.	ID=Os07t0203900-00;Name=Os07t0203900-00;Locus_id=Os07g0203900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8B886 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);TENOR=Os07t0203900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	5582400	5584106	.	+	0	Parent=Os07t0203900-00
Chr07	irgsp1_rep	mRNA	5584553	5587357	.	+	.	ID=Os07t0203925-00;Name=Os07t0203925-00;Locus_id=Os07g0203925;Note=Similar to ATP binding protein.;Transcript_evidence=FP098574 (DDBJ);ORF_evidence=NP_001151569.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os07t0203925-00
Chr07	irgsp1_rep	five_prime_UTR	5584553	5584633	.	+	.	Parent=Os07t0203925-00
Chr07	irgsp1_rep	CDS	5584634	5584663	.	+	0	Parent=Os07t0203925-00
Chr07	irgsp1_rep	CDS	5584963	5585032	.	+	0	Parent=Os07t0203925-00
Chr07	irgsp1_rep	CDS	5585273	5585448	.	+	2	Parent=Os07t0203925-00
Chr07	irgsp1_rep	CDS	5585659	5585752	.	+	0	Parent=Os07t0203925-00
Chr07	irgsp1_rep	CDS	5586435	5586517	.	+	2	Parent=Os07t0203925-00
Chr07	irgsp1_rep	CDS	5586617	5586660	.	+	0	Parent=Os07t0203925-00
Chr07	irgsp1_rep	CDS	5586771	5586836	.	+	1	Parent=Os07t0203925-00
Chr07	irgsp1_rep	CDS	5587216	5587357	.	+	1	Parent=Os07t0203925-00
Chr07	irgsp1_rep	mRNA	5592562	5596381	.	-	.	ID=Os07t0203950-00;Name=Os07t0203950-00;Locus_id=Os07g0203950;Note=Non-protein coding transcript.;Transcript_evidence=CT836167 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os07t0203950-00
Chr07	irgsp1_rep	exon	5596294	5596381	.	-	.	Parent=Os07t0203950-00
Chr07	irgsp1_rep	exon	5595837	5595919	.	-	.	Parent=Os07t0203950-00
Chr07	irgsp1_rep	exon	5593123	5593189	.	-	.	Parent=Os07t0203950-00
Chr07	irgsp1_rep	exon	5592562	5592936	.	-	.	Parent=Os07t0203950-00
Chr07	irgsp1_rep	mRNA	5593910	5594841	.	+	.	ID=Os07t0204000-00;Name=Os07t0204000-00;Locus_id=Os07g0204000;CGSNL Gene Symbol=ERF5;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 5;Oryzabase Gene Symbol Synonym(s)=OsERF#005%2C OsERF005%2C OsERF5%2C AP2/EREBP#072%2C AP2/EREBP72;Oryzabase Gene Name Synonym(s)=ethylene response factor 5%2C APETALA2/ethylene-responsive element binding protein 72;Note=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding domain containing protein.;Transcript_evidence=AK368449 (DDBJ);ORF_evidence=Q7XB68 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);Oryzabase=10532;TENOR=Os07t0204000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	5593910	5594710	.	+	0	Parent=Os07t0204000-00
Chr07	irgsp1_rep	three_prime_UTR	5594711	5594841	.	+	.	Parent=Os07t0204000-00
Chr07	irgsp1_rep	mRNA	5598662	5600729	.	+	.	ID=Os07t0204100-01;Name=Os07t0204100-01;Locus_id=Os07g0204100;Note=Conserved hypothetical protein.;Transcript_evidence=AK318592 (DDBJ%2C Best hit);ORF_evidence=Q7XB67 (UniProt);NIAS_FLcDNA=J100051O10;TENOR=Os07t0204100-01;KEGG=Os07t0204100-01
Chr07	irgsp1_rep	five_prime_UTR	5598662	5598881	.	+	.	Parent=Os07t0204100-01
Chr07	irgsp1_rep	CDS	5598882	5599014	.	+	0	Parent=Os07t0204100-01
Chr07	irgsp1_rep	CDS	5599094	5599530	.	+	2	Parent=Os07t0204100-01
Chr07	irgsp1_rep	CDS	5600303	5600422	.	+	0	Parent=Os07t0204100-01
Chr07	irgsp1_rep	three_prime_UTR	5600423	5600729	.	+	.	Parent=Os07t0204100-01
Chr07	irgsp1_rep	mRNA	5598921	5599556	.	-	.	ID=Os07t0204250-00;Name=Os07t0204250-00;Locus_id=Os07g0204250;Note=Hypothetical protein.;Transcript_evidence=EU946574 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0204250-00
Chr07	irgsp1_rep	five_prime_UTR	5599549	5599556	.	-	.	Parent=Os07t0204250-00
Chr07	irgsp1_rep	CDS	5599027	5599548	.	-	0	Parent=Os07t0204250-00
Chr07	irgsp1_rep	three_prime_UTR	5598921	5599026	.	-	.	Parent=Os07t0204250-00
Chr07	irgsp1_rep	mRNA	5612134	5612909	.	+	.	ID=Os07t0204400-00;Name=Os07t0204400-00;Locus_id=Os07g0204400;Note=Conserved hypothetical protein.;Transcript_evidence=CT837972 (DDBJ%2C Best hit);ORF_evidence=NP_001059143.1 (RefSeq);TENOR=Os07t0204400-00;KEGG=Os07t0204400-00
Chr07	irgsp1_rep	five_prime_UTR	5612134	5612237	.	+	.	Parent=Os07t0204400-00
Chr07	irgsp1_rep	CDS	5612238	5612310	.	+	0	Parent=Os07t0204400-00
Chr07	irgsp1_rep	CDS	5612492	5612613	.	+	2	Parent=Os07t0204400-00
Chr07	irgsp1_rep	three_prime_UTR	5612614	5612909	.	+	.	Parent=Os07t0204400-00
Chr07	irgsp1_rep	mRNA	5613825	5623660	.	-	.	ID=Os07t0204500-01;Name=Os07t0204500-01;Locus_id=Os07g0204500;Note=Survival protein SurE family protein.;Transcript_evidence=AK058694 (DDBJ%2C Best hit);ORF_evidence=B9FW32 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Survival protein SurE-like phosphatase/nucleotidase (IPR002828);NIAS_FLcDNA=001-019-B07;TENOR=Os07t0204500-01
Chr07	irgsp1_rep	five_prime_UTR	5623624	5623660	.	-	.	Parent=Os07t0204500-01
Chr07	irgsp1_rep	CDS	5623469	5623623	.	-	0	Parent=Os07t0204500-01
Chr07	irgsp1_rep	CDS	5622358	5622452	.	-	1	Parent=Os07t0204500-01
Chr07	irgsp1_rep	CDS	5622178	5622249	.	-	2	Parent=Os07t0204500-01
Chr07	irgsp1_rep	CDS	5622013	5622052	.	-	2	Parent=Os07t0204500-01
Chr07	irgsp1_rep	CDS	5621568	5621645	.	-	1	Parent=Os07t0204500-01
Chr07	irgsp1_rep	CDS	5620594	5620747	.	-	1	Parent=Os07t0204500-01
Chr07	irgsp1_rep	CDS	5620335	5620505	.	-	0	Parent=Os07t0204500-01
Chr07	irgsp1_rep	CDS	5619835	5619903	.	-	0	Parent=Os07t0204500-01
Chr07	irgsp1_rep	CDS	5619649	5619728	.	-	0	Parent=Os07t0204500-01
Chr07	irgsp1_rep	CDS	5614069	5614072	.	-	1	Parent=Os07t0204500-01
Chr07	irgsp1_rep	three_prime_UTR	5613825	5614068	.	-	.	Parent=Os07t0204500-01
Chr07	irgsp1_rep	mRNA	5613844	5623624	.	-	.	ID=Os07t0204500-02;Name=Os07t0204500-02;Locus_id=Os07g0204500;Note=Survival protein SurE family protein.;Transcript_evidence=AK102805 (DDBJ%2C Best hit);ORF_evidence=B7E331 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Survival protein SurE-like phosphatase/nucleotidase (IPR002828);NIAS_FLcDNA=J033108H16;TENOR=Os07t0204500-02
Chr07	irgsp1_rep	five_prime_UTR	5623624	5623624	.	-	.	Parent=Os07t0204500-02
Chr07	irgsp1_rep	CDS	5623469	5623623	.	-	0	Parent=Os07t0204500-02
Chr07	irgsp1_rep	CDS	5622358	5622452	.	-	1	Parent=Os07t0204500-02
Chr07	irgsp1_rep	CDS	5622178	5622249	.	-	2	Parent=Os07t0204500-02
Chr07	irgsp1_rep	CDS	5622013	5622052	.	-	2	Parent=Os07t0204500-02
Chr07	irgsp1_rep	CDS	5621568	5621645	.	-	1	Parent=Os07t0204500-02
Chr07	irgsp1_rep	CDS	5620594	5620747	.	-	1	Parent=Os07t0204500-02
Chr07	irgsp1_rep	CDS	5620335	5620505	.	-	0	Parent=Os07t0204500-02
Chr07	irgsp1_rep	CDS	5619835	5619903	.	-	0	Parent=Os07t0204500-02
Chr07	irgsp1_rep	CDS	5619649	5619728	.	-	0	Parent=Os07t0204500-02
Chr07	irgsp1_rep	CDS	5614069	5614072	.	-	1	Parent=Os07t0204500-02
Chr07	irgsp1_rep	three_prime_UTR	5613844	5614068	.	-	.	Parent=Os07t0204500-02
Chr07	irgsp1_rep	mRNA	5640466	5642369	.	+	.	ID=Os07t0204800-01;Name=Os07t0204800-01;Locus_id=Os07g0204800;Note=Similar to Charged multivesicular body protein 2a.;Transcript_evidence=AK105480 (DDBJ%2C Best hit);ORF_evidence=B6TJP8 (UniProt);NIAS_FLcDNA=001-127-A12;Expression=AK105480;TENOR=Os07t0204800-01;KEGG=Os07t0204800-01
Chr07	irgsp1_rep	five_prime_UTR	5640466	5640677	.	+	.	Parent=Os07t0204800-01
Chr07	irgsp1_rep	CDS	5640678	5640919	.	+	0	Parent=Os07t0204800-01
Chr07	irgsp1_rep	CDS	5641346	5641400	.	+	1	Parent=Os07t0204800-01
Chr07	irgsp1_rep	CDS	5641543	5641646	.	+	0	Parent=Os07t0204800-01
Chr07	irgsp1_rep	CDS	5642089	5642143	.	+	1	Parent=Os07t0204800-01
Chr07	irgsp1_rep	three_prime_UTR	5642144	5642369	.	+	.	Parent=Os07t0204800-01
Chr07	irgsp1_rep	mRNA	5642340	5642747	.	+	.	ID=Os07t0204800-02;Name=Os07t0204800-02;Locus_id=Os07g0204800;Note=Non-protein coding transcript.;Transcript_evidence=AK059317 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-025-H04;TENOR=Os07t0204800-02
Chr07	irgsp1_rep	exon	5642340	5642747	.	+	.	Parent=Os07t0204800-02
Chr07	irgsp1_rep	mRNA	5645630	5651129	.	+	.	ID=Os07t0204900-01;Name=Os07t0204900-01;Locus_id=Os07g0204900;Note=Similar to Zeta-carotene desaturase (Fragment).;Transcript_evidence=AK065213 (DDBJ%2C Best hit);ORF_evidence=A9UKC6 (UniProt);GO=Biological Process: carotenoid biosynthetic process (GO:0016117),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: carotene 7%2C8-desaturase activity (GO:0016719);InterPro=Amine oxidase (IPR002937),Carotene 7%2C8-desaturase (IPR014103);NIAS_FLcDNA=J013002G03;Expression=AK065213;TENOR=Os07t0204900-01;KEGG=Os07t0204900-01 (EC:1.14.99.30)
Chr07	irgsp1_rep	five_prime_UTR	5645630	5645780	.	+	.	Parent=Os07t0204900-01
Chr07	irgsp1_rep	CDS	5645781	5645946	.	+	0	Parent=Os07t0204900-01
Chr07	irgsp1_rep	CDS	5646284	5646408	.	+	2	Parent=Os07t0204900-01
Chr07	irgsp1_rep	CDS	5646514	5646648	.	+	0	Parent=Os07t0204900-01
Chr07	irgsp1_rep	CDS	5646976	5647048	.	+	0	Parent=Os07t0204900-01
Chr07	irgsp1_rep	CDS	5647429	5647502	.	+	2	Parent=Os07t0204900-01
Chr07	irgsp1_rep	CDS	5648140	5648244	.	+	0	Parent=Os07t0204900-01
Chr07	irgsp1_rep	CDS	5648485	5648729	.	+	0	Parent=Os07t0204900-01
Chr07	irgsp1_rep	CDS	5648813	5648900	.	+	1	Parent=Os07t0204900-01
Chr07	irgsp1_rep	CDS	5649050	5649092	.	+	0	Parent=Os07t0204900-01
Chr07	irgsp1_rep	CDS	5649167	5649323	.	+	2	Parent=Os07t0204900-01
Chr07	irgsp1_rep	CDS	5649496	5649624	.	+	1	Parent=Os07t0204900-01
Chr07	irgsp1_rep	CDS	5649860	5649932	.	+	1	Parent=Os07t0204900-01
Chr07	irgsp1_rep	CDS	5650129	5650293	.	+	0	Parent=Os07t0204900-01
Chr07	irgsp1_rep	CDS	5650499	5650657	.	+	0	Parent=Os07t0204900-01
Chr07	irgsp1_rep	three_prime_UTR	5650658	5651129	.	+	.	Parent=Os07t0204900-01
Chr07	irgsp1_rep	mRNA	5646980	5650943	.	+	.	ID=Os07t0204900-02;Name=Os07t0204900-02;Locus_id=Os07g0204900;Note=Similar to Zeta-carotene desaturase.;Transcript_evidence=AK066223 (DDBJ%2C Best hit);ORF_evidence=B6UBK2 (UniProt);GO=Biological Process: carotenoid biosynthetic process (GO:0016117),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: carotene 7%2C8-desaturase activity (GO:0016719);InterPro=Amine oxidase (IPR002937),Carotene 7%2C8-desaturase (IPR014103);NIAS_FLcDNA=J013056I08;Expression=AK066223;TENOR=Os07t0204900-02;KEGG=Os07t0204900-02 (EC:1.14.99.30)
Chr07	irgsp1_rep	five_prime_UTR	5646980	5646981	.	+	.	Parent=Os07t0204900-02
Chr07	irgsp1_rep	CDS	5646982	5647048	.	+	0	Parent=Os07t0204900-02
Chr07	irgsp1_rep	CDS	5647429	5647502	.	+	2	Parent=Os07t0204900-02
Chr07	irgsp1_rep	CDS	5648140	5648244	.	+	0	Parent=Os07t0204900-02
Chr07	irgsp1_rep	CDS	5648485	5648729	.	+	0	Parent=Os07t0204900-02
Chr07	irgsp1_rep	CDS	5648813	5648900	.	+	1	Parent=Os07t0204900-02
Chr07	irgsp1_rep	CDS	5649050	5649092	.	+	0	Parent=Os07t0204900-02
Chr07	irgsp1_rep	CDS	5649167	5649323	.	+	2	Parent=Os07t0204900-02
Chr07	irgsp1_rep	CDS	5649496	5649624	.	+	1	Parent=Os07t0204900-02
Chr07	irgsp1_rep	CDS	5649860	5649932	.	+	1	Parent=Os07t0204900-02
Chr07	irgsp1_rep	CDS	5650129	5650293	.	+	0	Parent=Os07t0204900-02
Chr07	irgsp1_rep	CDS	5650499	5650657	.	+	0	Parent=Os07t0204900-02
Chr07	irgsp1_rep	three_prime_UTR	5650658	5650943	.	+	.	Parent=Os07t0204900-02
Chr07	irgsp1_rep	mRNA	5648492	5650901	.	+	.	ID=Os07t0204900-03;Name=Os07t0204900-03;Locus_id=Os07g0204900;Note=Similar to Zeta-carotene desaturase.;Transcript_evidence=AK062079 (DDBJ%2C Best hit);ORF_evidence=B6UBK2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Amine oxidase (IPR002937);NIAS_FLcDNA=001-044-F08;Expression=AK062079;TENOR=Os07t0204900-03;KEGG=Os07t0204900-03 (EC:1.14.99.30)
Chr07	irgsp1_rep	five_prime_UTR	5648492	5648493	.	+	.	Parent=Os07t0204900-03
Chr07	irgsp1_rep	CDS	5648494	5648729	.	+	0	Parent=Os07t0204900-03
Chr07	irgsp1_rep	CDS	5648813	5648900	.	+	1	Parent=Os07t0204900-03
Chr07	irgsp1_rep	CDS	5649050	5649092	.	+	0	Parent=Os07t0204900-03
Chr07	irgsp1_rep	CDS	5649167	5649323	.	+	2	Parent=Os07t0204900-03
Chr07	irgsp1_rep	CDS	5649496	5649624	.	+	1	Parent=Os07t0204900-03
Chr07	irgsp1_rep	CDS	5649860	5649932	.	+	1	Parent=Os07t0204900-03
Chr07	irgsp1_rep	CDS	5650129	5650293	.	+	0	Parent=Os07t0204900-03
Chr07	irgsp1_rep	CDS	5650499	5650657	.	+	0	Parent=Os07t0204900-03
Chr07	irgsp1_rep	three_prime_UTR	5650658	5650901	.	+	.	Parent=Os07t0204900-03
Chr07	irgsp1_rep	mRNA	5651977	5657134	.	+	.	ID=Os07t0205000-01;Name=Os07t0205000-01;Locus_id=Os07g0205000;Note=Similar to CytoChrome-C reductase 14 kDa subunit (EC 1.10.2.2) (Fragment).;Transcript_evidence=AK072032 (DDBJ%2C Best hit);ORF_evidence=B6TMP9 (UniProt);GO=Biological Process: mitochondrial electron transport%2C ubiquinol to cytoChrome c (GO:0006122),Molecular Function: ubiquinol-cytoChrome-c reductase activity (GO:0008121);InterPro=CytoChrome d ubiquinol oxidase%2C 14kDa subunit (IPR003197);NIAS_FLcDNA=J013105M20;Expression=AK072032;TENOR=Os07t0205000-01;KEGG=Os07t0205000-01 (EC:1.10.2.2)
Chr07	irgsp1_rep	five_prime_UTR	5651977	5652256	.	+	.	Parent=Os07t0205000-01
Chr07	irgsp1_rep	five_prime_UTR	5652369	5652499	.	+	.	Parent=Os07t0205000-01
Chr07	irgsp1_rep	five_prime_UTR	5652728	5652793	.	+	.	Parent=Os07t0205000-01
Chr07	irgsp1_rep	five_prime_UTR	5652936	5653018	.	+	.	Parent=Os07t0205000-01
Chr07	irgsp1_rep	five_prime_UTR	5653351	5653397	.	+	.	Parent=Os07t0205000-01
Chr07	irgsp1_rep	five_prime_UTR	5653584	5653662	.	+	.	Parent=Os07t0205000-01
Chr07	irgsp1_rep	five_prime_UTR	5653762	5653974	.	+	.	Parent=Os07t0205000-01
Chr07	irgsp1_rep	five_prime_UTR	5654050	5654110	.	+	.	Parent=Os07t0205000-01
Chr07	irgsp1_rep	five_prime_UTR	5654930	5654960	.	+	.	Parent=Os07t0205000-01
Chr07	irgsp1_rep	CDS	5654961	5655213	.	+	0	Parent=Os07t0205000-01
Chr07	irgsp1_rep	CDS	5655314	5655471	.	+	2	Parent=Os07t0205000-01
Chr07	irgsp1_rep	CDS	5656155	5656202	.	+	0	Parent=Os07t0205000-01
Chr07	irgsp1_rep	CDS	5656905	5656973	.	+	0	Parent=Os07t0205000-01
Chr07	irgsp1_rep	three_prime_UTR	5656974	5657134	.	+	.	Parent=Os07t0205000-01
Chr07	irgsp1_rep	mRNA	5655026	5657111	.	+	.	ID=Os07t0205000-02;Name=Os07t0205000-02;Locus_id=Os07g0205000;Note=Similar to Ubiquinol-cytoChrome c reductase complex 14 kDa protein.;Transcript_evidence=AK103963 (DDBJ%2C Best hit);ORF_evidence=B6TMP9 (UniProt);GO=Biological Process: mitochondrial electron transport%2C ubiquinol to cytoChrome c (GO:0006122),Molecular Function: ubiquinol-cytoChrome-c reductase activity (GO:0008121);InterPro=CytoChrome d ubiquinol oxidase%2C 14kDa subunit (IPR003197);NIAS_FLcDNA=001-015-F05;Expression=AK103963;TENOR=Os07t0205000-02;KEGG=Os07t0205000-02 (EC:1.10.2.2)
Chr07	irgsp1_rep	five_prime_UTR	5655026	5655116	.	+	.	Parent=Os07t0205000-02
Chr07	irgsp1_rep	CDS	5655117	5655213	.	+	0	Parent=Os07t0205000-02
Chr07	irgsp1_rep	CDS	5655314	5655471	.	+	2	Parent=Os07t0205000-02
Chr07	irgsp1_rep	CDS	5656155	5656202	.	+	0	Parent=Os07t0205000-02
Chr07	irgsp1_rep	CDS	5656905	5656973	.	+	0	Parent=Os07t0205000-02
Chr07	irgsp1_rep	three_prime_UTR	5656974	5657111	.	+	.	Parent=Os07t0205000-02
Chr07	irgsp1_rep	mRNA	5655059	5657245	.	+	.	ID=Os07t0205000-03;Name=Os07t0205000-03;Locus_id=Os07g0205000;Note=Similar to Ubiquinol-cytoChrome c reductase complex 14 kDa protein.;Transcript_evidence=AK121368 (DDBJ%2C Best hit);ORF_evidence=B6TMP9 (UniProt);GO=Biological Process: mitochondrial electron transport%2C ubiquinol to cytoChrome c (GO:0006122),Molecular Function: ubiquinol-cytoChrome-c reductase activity (GO:0008121);InterPro=CytoChrome d ubiquinol oxidase%2C 14kDa subunit (IPR003197);NIAS_FLcDNA=J023125I03;Expression=AK121368;TENOR=Os07t0205000-03;KEGG=Os07t0205000-03 (EC:1.10.2.2)
Chr07	irgsp1_rep	five_prime_UTR	5655059	5655116	.	+	.	Parent=Os07t0205000-03
Chr07	irgsp1_rep	CDS	5655117	5655213	.	+	0	Parent=Os07t0205000-03
Chr07	irgsp1_rep	CDS	5655314	5655471	.	+	2	Parent=Os07t0205000-03
Chr07	irgsp1_rep	CDS	5656155	5656202	.	+	0	Parent=Os07t0205000-03
Chr07	irgsp1_rep	CDS	5656905	5656973	.	+	0	Parent=Os07t0205000-03
Chr07	irgsp1_rep	three_prime_UTR	5656974	5657245	.	+	.	Parent=Os07t0205000-03
Chr07	irgsp1_rep	mRNA	5659654	5667026	.	+	.	ID=Os07t0205200-01;Name=Os07t0205200-01;Locus_id=Os07g0205200;Note=Hypothetical conserved gene.;Transcript_evidence=AK111572 (DDBJ%2C Best hit);ORF_evidence=NP_001183382.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634);InterPro=TFIID subunit%2C WD40-associated region (IPR007582);NIAS_FLcDNA=J013072E21;Expression=AK111572;TENOR=Os07t0205200-01;KEGG=Os07t0205200-01
Chr07	irgsp1_rep	five_prime_UTR	5659654	5659773	.	+	.	Parent=Os07t0205200-01
Chr07	irgsp1_rep	CDS	5659774	5659943	.	+	0	Parent=Os07t0205200-01
Chr07	irgsp1_rep	CDS	5660502	5660607	.	+	1	Parent=Os07t0205200-01
Chr07	irgsp1_rep	three_prime_UTR	5660608	5661182	.	+	.	Parent=Os07t0205200-01
Chr07	irgsp1_rep	three_prime_UTR	5661300	5661391	.	+	.	Parent=Os07t0205200-01
Chr07	irgsp1_rep	three_prime_UTR	5661519	5661575	.	+	.	Parent=Os07t0205200-01
Chr07	irgsp1_rep	three_prime_UTR	5661743	5661830	.	+	.	Parent=Os07t0205200-01
Chr07	irgsp1_rep	three_prime_UTR	5661947	5662056	.	+	.	Parent=Os07t0205200-01
Chr07	irgsp1_rep	three_prime_UTR	5662247	5662343	.	+	.	Parent=Os07t0205200-01
Chr07	irgsp1_rep	three_prime_UTR	5662729	5662882	.	+	.	Parent=Os07t0205200-01
Chr07	irgsp1_rep	three_prime_UTR	5664133	5664528	.	+	.	Parent=Os07t0205200-01
Chr07	irgsp1_rep	three_prime_UTR	5664878	5665042	.	+	.	Parent=Os07t0205200-01
Chr07	irgsp1_rep	three_prime_UTR	5665142	5665218	.	+	.	Parent=Os07t0205200-01
Chr07	irgsp1_rep	three_prime_UTR	5665497	5665613	.	+	.	Parent=Os07t0205200-01
Chr07	irgsp1_rep	three_prime_UTR	5665748	5666013	.	+	.	Parent=Os07t0205200-01
Chr07	irgsp1_rep	three_prime_UTR	5666982	5667026	.	+	.	Parent=Os07t0205200-01
Chr07	irgsp1_rep	mRNA	5661353	5667669	.	+	.	ID=Os07t0205200-02;Name=Os07t0205200-02;Locus_id=Os07g0205200;Note=Similar to TAF5 (TBP-ASSOCIATED FACTOR 5)%3B nucleotide binding / transcription regulator.;Transcript_evidence=AK111714 (DDBJ%2C Best hit);ORF_evidence=NP_197897.3 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634);InterPro=TFIID subunit%2C WD40-associated region (IPR007582);NIAS_FLcDNA=J023021I24;TENOR=Os07t0205200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	5661353	5661391	.	+	0	Parent=Os07t0205200-02
Chr07	irgsp1_rep	CDS	5661519	5661575	.	+	0	Parent=Os07t0205200-02
Chr07	irgsp1_rep	CDS	5661743	5661830	.	+	0	Parent=Os07t0205200-02
Chr07	irgsp1_rep	CDS	5661947	5662056	.	+	2	Parent=Os07t0205200-02
Chr07	irgsp1_rep	CDS	5662247	5662343	.	+	0	Parent=Os07t0205200-02
Chr07	irgsp1_rep	CDS	5662729	5662882	.	+	2	Parent=Os07t0205200-02
Chr07	irgsp1_rep	CDS	5664133	5664243	.	+	1	Parent=Os07t0205200-02
Chr07	irgsp1_rep	CDS	5664328	5664433	.	+	1	Parent=Os07t0205200-02
Chr07	irgsp1_rep	three_prime_UTR	5664434	5664528	.	+	.	Parent=Os07t0205200-02
Chr07	irgsp1_rep	three_prime_UTR	5664878	5665042	.	+	.	Parent=Os07t0205200-02
Chr07	irgsp1_rep	three_prime_UTR	5665142	5665218	.	+	.	Parent=Os07t0205200-02
Chr07	irgsp1_rep	three_prime_UTR	5665497	5665613	.	+	.	Parent=Os07t0205200-02
Chr07	irgsp1_rep	three_prime_UTR	5665748	5666013	.	+	.	Parent=Os07t0205200-02
Chr07	irgsp1_rep	three_prime_UTR	5666982	5667077	.	+	.	Parent=Os07t0205200-02
Chr07	irgsp1_rep	three_prime_UTR	5667156	5667231	.	+	.	Parent=Os07t0205200-02
Chr07	irgsp1_rep	three_prime_UTR	5667329	5667669	.	+	.	Parent=Os07t0205200-02
Chr07	irgsp1_rep	mRNA	5662263	5665021	.	-	.	ID=Os07t0205350-00;Name=Os07t0205350-00;Locus_id=Os07g0205350;Note=Non-protein coding transcript.;Transcript_evidence=BT086930 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0205350-00
Chr07	irgsp1_rep	exon	5664853	5665021	.	-	.	Parent=Os07t0205350-00
Chr07	irgsp1_rep	exon	5664116	5664322	.	-	.	Parent=Os07t0205350-00
Chr07	irgsp1_rep	exon	5662729	5662865	.	-	.	Parent=Os07t0205350-00
Chr07	irgsp1_rep	exon	5662263	5662353	.	-	.	Parent=Os07t0205350-00
Chr07	irgsp1_rep	mRNA	5682013	5685265	.	+	.	ID=Os07t0205500-01;Name=Os07t0205500-01;Locus_id=Os07g0205500;Note=Protein of unknown function DUF239%2C plant domain containing protein.;Transcript_evidence=AK103449 (DDBJ%2C Best hit);ORF_evidence=B6TV70 (UniProt);InterPro=Glucoamylase%2C putatuve (IPR004314);NIAS_FLcDNA=J033129H24;Expression=AK103449;TENOR=Os07t0205500-01;KEGG=Os07t0205500-01
Chr07	irgsp1_rep	five_prime_UTR	5682013	5682290	.	+	.	Parent=Os07t0205500-01
Chr07	irgsp1_rep	CDS	5682291	5682428	.	+	0	Parent=Os07t0205500-01
Chr07	irgsp1_rep	CDS	5683023	5683109	.	+	0	Parent=Os07t0205500-01
Chr07	irgsp1_rep	CDS	5683248	5683505	.	+	0	Parent=Os07t0205500-01
Chr07	irgsp1_rep	CDS	5683613	5683777	.	+	0	Parent=Os07t0205500-01
Chr07	irgsp1_rep	CDS	5683954	5684007	.	+	0	Parent=Os07t0205500-01
Chr07	irgsp1_rep	CDS	5684166	5684312	.	+	0	Parent=Os07t0205500-01
Chr07	irgsp1_rep	CDS	5684583	5684960	.	+	0	Parent=Os07t0205500-01
Chr07	irgsp1_rep	three_prime_UTR	5684961	5685265	.	+	.	Parent=Os07t0205500-01
Chr07	irgsp1_rep	mRNA	5682196	5685233	.	-	.	ID=Os07t0205600-00;Name=Os07t0205600-00;Locus_id=Os07g0205600;Note=Hypothetical protein.;Transcript_evidence=tplb0032e19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0205600-00
Chr07	irgsp1_rep	five_prime_UTR	5685047	5685233	.	-	.	Parent=Os07t0205600-00
Chr07	irgsp1_rep	CDS	5685040	5685046	.	-	0	Parent=Os07t0205600-00
Chr07	irgsp1_rep	CDS	5684581	5684977	.	-	2	Parent=Os07t0205600-00
Chr07	irgsp1_rep	CDS	5684293	5684305	.	-	1	Parent=Os07t0205600-00
Chr07	irgsp1_rep	three_prime_UTR	5684120	5684292	.	-	.	Parent=Os07t0205600-00
Chr07	irgsp1_rep	three_prime_UTR	5683610	5683780	.	-	.	Parent=Os07t0205600-00
Chr07	irgsp1_rep	three_prime_UTR	5683172	5683502	.	-	.	Parent=Os07t0205600-00
Chr07	irgsp1_rep	three_prime_UTR	5682196	5682443	.	-	.	Parent=Os07t0205600-00
Chr07	irgsp1_rep	mRNA	5691967	5699883	.	-	.	ID=Os07t0205700-01;Name=Os07t0205700-01;Locus_id=Os07g0205700;Note=Similar to Xaa-Pro dipeptidase (EC 3.4.-.-).;Transcript_evidence=AK120553 (DDBJ%2C Best hit);ORF_evidence=NP_187186.5 (RefSeq);GO=Biological Process: cellular process (GO:0009987),Molecular Function: hydrolase activity (GO:0016787);InterPro=Creatinase (IPR000587),Peptidase M24%2C structural domain (IPR000994);NIAS_FLcDNA=J013130G17;Expression=AK120553;TENOR=Os07t0205700-01;KEGG=Os07t0205700-01 (EC:3.4.11.9)
Chr07	irgsp1_rep	five_prime_UTR	5699819	5699883	.	-	.	Parent=Os07t0205700-01
Chr07	irgsp1_rep	CDS	5699477	5699818	.	-	0	Parent=Os07t0205700-01
Chr07	irgsp1_rep	CDS	5698899	5699024	.	-	0	Parent=Os07t0205700-01
Chr07	irgsp1_rep	CDS	5698687	5698806	.	-	0	Parent=Os07t0205700-01
Chr07	irgsp1_rep	CDS	5697871	5698146	.	-	0	Parent=Os07t0205700-01
Chr07	irgsp1_rep	CDS	5697263	5697435	.	-	0	Parent=Os07t0205700-01
Chr07	irgsp1_rep	CDS	5696301	5696576	.	-	1	Parent=Os07t0205700-01
Chr07	irgsp1_rep	CDS	5695311	5695462	.	-	1	Parent=Os07t0205700-01
Chr07	irgsp1_rep	CDS	5694139	5694329	.	-	2	Parent=Os07t0205700-01
Chr07	irgsp1_rep	CDS	5693871	5693979	.	-	0	Parent=Os07t0205700-01
Chr07	irgsp1_rep	CDS	5693623	5693777	.	-	2	Parent=Os07t0205700-01
Chr07	irgsp1_rep	CDS	5693412	5693504	.	-	0	Parent=Os07t0205700-01
Chr07	irgsp1_rep	CDS	5693077	5693157	.	-	0	Parent=Os07t0205700-01
Chr07	irgsp1_rep	CDS	5692434	5692496	.	-	0	Parent=Os07t0205700-01
Chr07	irgsp1_rep	three_prime_UTR	5691967	5692433	.	-	.	Parent=Os07t0205700-01
Chr07	irgsp1_rep	mRNA	5702786	5711287	.	-	.	ID=Os07t0205900-01;Name=Os07t0205900-01;Locus_id=Os07g0205900;Oryzabase Gene Name Synonym(s)=SRL2-like gene%2C semi-rolled leaf 2-like gene;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=AK070209 (DDBJ%2C Best hit);ORF_evidence=B8B899 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023044A22;Oryzabase=20949;Expression=AK070209;TENOR=Os07t0205900-01;KEGG=Os07t0205900-01
Chr07	irgsp1_rep	five_prime_UTR	5711138	5711287	.	-	.	Parent=Os07t0205900-01
Chr07	irgsp1_rep	five_prime_UTR	5710545	5710553	.	-	.	Parent=Os07t0205900-01
Chr07	irgsp1_rep	CDS	5710410	5710544	.	-	0	Parent=Os07t0205900-01
Chr07	irgsp1_rep	CDS	5710189	5710263	.	-	0	Parent=Os07t0205900-01
Chr07	irgsp1_rep	CDS	5709892	5710007	.	-	0	Parent=Os07t0205900-01
Chr07	irgsp1_rep	CDS	5709669	5709783	.	-	1	Parent=Os07t0205900-01
Chr07	irgsp1_rep	CDS	5709437	5709565	.	-	0	Parent=Os07t0205900-01
Chr07	irgsp1_rep	CDS	5708738	5708785	.	-	0	Parent=Os07t0205900-01
Chr07	irgsp1_rep	CDS	5708071	5708288	.	-	0	Parent=Os07t0205900-01
Chr07	irgsp1_rep	CDS	5707784	5707980	.	-	1	Parent=Os07t0205900-01
Chr07	irgsp1_rep	CDS	5707407	5707693	.	-	2	Parent=Os07t0205900-01
Chr07	irgsp1_rep	CDS	5707056	5707205	.	-	0	Parent=Os07t0205900-01
Chr07	irgsp1_rep	CDS	5706442	5706963	.	-	0	Parent=Os07t0205900-01
Chr07	irgsp1_rep	CDS	5706202	5706351	.	-	0	Parent=Os07t0205900-01
Chr07	irgsp1_rep	CDS	5705962	5706037	.	-	0	Parent=Os07t0205900-01
Chr07	irgsp1_rep	CDS	5705707	5705834	.	-	2	Parent=Os07t0205900-01
Chr07	irgsp1_rep	CDS	5704700	5704900	.	-	0	Parent=Os07t0205900-01
Chr07	irgsp1_rep	CDS	5704450	5704587	.	-	0	Parent=Os07t0205900-01
Chr07	irgsp1_rep	CDS	5704258	5704380	.	-	0	Parent=Os07t0205900-01
Chr07	irgsp1_rep	CDS	5703583	5703801	.	-	0	Parent=Os07t0205900-01
Chr07	irgsp1_rep	CDS	5703268	5703441	.	-	0	Parent=Os07t0205900-01
Chr07	irgsp1_rep	three_prime_UTR	5702786	5703267	.	-	.	Parent=Os07t0205900-01
Chr07	irgsp1_rep	mRNA	5706284	5710009	.	-	.	ID=Os07t0205900-02;Name=Os07t0205900-02;Locus_id=Os07g0205900;Oryzabase Gene Name Synonym(s)=SRL2-like gene%2C semi-rolled leaf 2-like gene;Note=Similar to predicted protein.;Transcript_evidence=AK069835 (DDBJ%2C Best hit);ORF_evidence=B8B899 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023031O05;Oryzabase=20949;TENOR=Os07t0205900-02
Chr07	irgsp1_rep	five_prime_UTR	5710008	5710009	.	-	.	Parent=Os07t0205900-02
Chr07	irgsp1_rep	CDS	5709892	5710007	.	-	0	Parent=Os07t0205900-02
Chr07	irgsp1_rep	CDS	5709669	5709783	.	-	1	Parent=Os07t0205900-02
Chr07	irgsp1_rep	CDS	5709437	5709565	.	-	0	Parent=Os07t0205900-02
Chr07	irgsp1_rep	CDS	5708738	5708785	.	-	0	Parent=Os07t0205900-02
Chr07	irgsp1_rep	CDS	5708071	5708288	.	-	0	Parent=Os07t0205900-02
Chr07	irgsp1_rep	CDS	5707784	5707980	.	-	1	Parent=Os07t0205900-02
Chr07	irgsp1_rep	CDS	5707407	5707693	.	-	2	Parent=Os07t0205900-02
Chr07	irgsp1_rep	CDS	5707056	5707205	.	-	0	Parent=Os07t0205900-02
Chr07	irgsp1_rep	CDS	5706442	5706963	.	-	0	Parent=Os07t0205900-02
Chr07	irgsp1_rep	CDS	5706284	5706351	.	-	0	Parent=Os07t0205900-02
Chr07	irgsp1_rep	mRNA	5725201	5726591	.	-	.	ID=Os07t0206300-00;Name=Os07t0206300-00;Locus_id=Os07g0206300;Note=Conserved hypothetical protein.;Transcript_evidence=CT836132 (DDBJ%2C Best hit);ORF_evidence=NP_001175100.1 (RefSeq);TENOR=Os07t0206300-00;KEGG=Os07t0206300-00
Chr07	irgsp1_rep	five_prime_UTR	5726516	5726591	.	-	.	Parent=Os07t0206300-00
Chr07	irgsp1_rep	CDS	5726246	5726515	.	-	0	Parent=Os07t0206300-00
Chr07	irgsp1_rep	three_prime_UTR	5726127	5726245	.	-	.	Parent=Os07t0206300-00
Chr07	irgsp1_rep	three_prime_UTR	5725201	5725402	.	-	.	Parent=Os07t0206300-00
Chr07	irgsp1_rep	mRNA	5736877	5737483	.	+	.	ID=Os07t0206400-01;Name=Os07t0206400-01;Locus_id=Os07g0206400;Oryzabase Gene Symbol Synonym(s)=RP6%2C Prol-18%2C OsEnS-93%2C pro13a.1%2C PROLM25;Oryzabase Gene Name Synonym(s)=prolamin%2C prolamin RP6%2C 13 kDa prolamin%2C endosperm-specific gene 93%2C Prolamin 25;Note=13 kDa prolamin precursor.;Transcript_evidence=AK242940 (DDBJ%2C Best hit);ORF_evidence=P17048 (UniProt);GO=Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Gliadin/LMW glutenin (IPR001954),Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Bifunctional trypsin/alpha-amylase inhibitor (IPR013771),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=J090087H18;Oryzabase=13761;TENOR=Os07t0206400-01;KEGG=Os07t0206400-01
Chr07	irgsp1_rep	five_prime_UTR	5736877	5736936	.	+	.	Parent=Os07t0206400-01
Chr07	irgsp1_rep	CDS	5736937	5737407	.	+	0	Parent=Os07t0206400-01
Chr07	irgsp1_rep	three_prime_UTR	5737408	5737483	.	+	.	Parent=Os07t0206400-01
Chr07	irgsp1_rep	mRNA	5741877	5742488	.	+	.	ID=Os07t0206500-00;Name=Os07t0206500-00;Locus_id=Os07g0206500;Oryzabase Gene Symbol Synonym(s)=Prol-19%2C OsEnS-94%2C RM1%2C pro13a.2%2C PROLM26;Oryzabase Gene Name Synonym(s)=16 kDa major rice prolamin%2C endosperm-specific gene 94%2C Prolamin 26;Note=13 kDa prolamin precursor.;Transcript_evidence=X60979 (DDBJ%2C Best hit);ORF_evidence=Q9SAY8 (UniProt);GO=Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Gliadin/LMW glutenin (IPR001954),Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Bifunctional trypsin/alpha-amylase inhibitor (IPR013771),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);Oryzabase=14426;Expression=X60979;TENOR=Os07t0206500-00;KEGG=Os07t0206500-00
Chr07	irgsp1_rep	five_prime_UTR	5741877	5741906	.	+	.	Parent=Os07t0206500-00
Chr07	irgsp1_rep	CDS	5741907	5742377	.	+	0	Parent=Os07t0206500-00
Chr07	irgsp1_rep	three_prime_UTR	5742378	5742488	.	+	.	Parent=Os07t0206500-00
Chr07	irgsp1_rep	mRNA	5747394	5749826	.	-	.	ID=Os07t0206600-01;Name=Os07t0206600-01;Locus_id=Os07g0206600;Note=Similar to Hexose transporter.;Transcript_evidence=AK119911 (DDBJ%2C Best hit);ORF_evidence=NP_001151401.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=002-183-C06;Expression=AK119911;TENOR=Os07t0206600-01;KEGG=Os07t0206600-01
Chr07	irgsp1_rep	five_prime_UTR	5749785	5749826	.	-	.	Parent=Os07t0206600-01
Chr07	irgsp1_rep	CDS	5748678	5749784	.	-	0	Parent=Os07t0206600-01
Chr07	irgsp1_rep	CDS	5747555	5747995	.	-	0	Parent=Os07t0206600-01
Chr07	irgsp1_rep	three_prime_UTR	5747394	5747554	.	-	.	Parent=Os07t0206600-01
Chr07	irgsp1_rep	mRNA	5747552	5749325	.	+	.	ID=Os07t0206650-00;Name=Os07t0206650-00;Locus_id=Os07g0206650;Note=Hypothetical gene.;Transcript_evidence=EU945989 (DDBJ);ORF_evidence=GeneMark;TENOR=Os07t0206650-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	5747552	5747552	.	+	.	Parent=Os07t0206650-00
Chr07	irgsp1_rep	CDS	5747553	5747903	.	+	0	Parent=Os07t0206650-00
Chr07	irgsp1_rep	three_prime_UTR	5747904	5748013	.	+	.	Parent=Os07t0206650-00
Chr07	irgsp1_rep	three_prime_UTR	5748607	5749325	.	+	.	Parent=Os07t0206650-00
Chr07	irgsp1_rep	mRNA	5750899	5756651	.	-	.	ID=Os07t0206700-01;Name=Os07t0206700-01;Locus_id=Os07g0206700;CGSNL Gene Symbol=SMT1-1;CGSNL Gene Name=STEROL METHYLTRANSFERASE 1-1;Oryzabase Gene Symbol Synonym(s)=Ossmt1-1%2C OsSMT1-1;Oryzabase Gene Name Synonym(s)=sterol methyltransferase 1-1%2C sterol-C24-methyltransferase 1-1;Note=Cycloartenol-C-24-methyltransferase 1 (EC 2.1.1.41) (24-sterol C- methyltransferase 1) (Sterol C-methyltransferase 1).;Transcript_evidence=AK072893 (DDBJ%2C Best hit);ORF_evidence=Q6ZIX2 (UniProt);GO=Biological Process: steroid biosynthetic process (GO:0006694),Biological Process: metabolic process (GO:0008152),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Methyltransferase type 11 (IPR013216),Sterol methyltransferase C-terminal (IPR013705);NIAS_FLcDNA=J023149L23;Oryzabase=13802;Expression=AK072893;TENOR=Os07t0206700-01;KEGG=Os07t0206700-01 (EC:2.1.1.41)
Chr07	irgsp1_rep	five_prime_UTR	5756576	5756651	.	-	.	Parent=Os07t0206700-01
Chr07	irgsp1_rep	five_prime_UTR	5756065	5756090	.	-	.	Parent=Os07t0206700-01
Chr07	irgsp1_rep	CDS	5755982	5756064	.	-	0	Parent=Os07t0206700-01
Chr07	irgsp1_rep	CDS	5754941	5755007	.	-	1	Parent=Os07t0206700-01
Chr07	irgsp1_rep	CDS	5754333	5754406	.	-	0	Parent=Os07t0206700-01
Chr07	irgsp1_rep	CDS	5754129	5754213	.	-	1	Parent=Os07t0206700-01
Chr07	irgsp1_rep	CDS	5753978	5754033	.	-	0	Parent=Os07t0206700-01
Chr07	irgsp1_rep	CDS	5753557	5753611	.	-	1	Parent=Os07t0206700-01
Chr07	irgsp1_rep	CDS	5753367	5753414	.	-	0	Parent=Os07t0206700-01
Chr07	irgsp1_rep	CDS	5753033	5753116	.	-	0	Parent=Os07t0206700-01
Chr07	irgsp1_rep	CDS	5752738	5752938	.	-	0	Parent=Os07t0206700-01
Chr07	irgsp1_rep	CDS	5752398	5752523	.	-	0	Parent=Os07t0206700-01
Chr07	irgsp1_rep	CDS	5751587	5751684	.	-	0	Parent=Os07t0206700-01
Chr07	irgsp1_rep	CDS	5751374	5751431	.	-	1	Parent=Os07t0206700-01
Chr07	irgsp1_rep	three_prime_UTR	5751353	5751373	.	-	.	Parent=Os07t0206700-01
Chr07	irgsp1_rep	three_prime_UTR	5750899	5751264	.	-	.	Parent=Os07t0206700-01
Chr07	irgsp1_rep	mRNA	5750998	5756651	.	-	.	ID=Os07t0206700-02;Name=Os07t0206700-02;Locus_id=Os07g0206700;CGSNL Gene Symbol=SMT1-1;CGSNL Gene Name=STEROL METHYLTRANSFERASE 1-1;Oryzabase Gene Symbol Synonym(s)=Ossmt1-1%2C OsSMT1-1;Oryzabase Gene Name Synonym(s)=sterol methyltransferase 1-1%2C sterol-C24-methyltransferase 1-1;Note=Similar to Cycloartenol-C-24-methyltransferase 1.;Transcript_evidence=AK100653 (DDBJ%2C Best hit);ORF_evidence=Q6ZIX2 (UniProt);GO=Biological Process: steroid biosynthetic process (GO:0006694),Biological Process: metabolic process (GO:0008152),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Methyltransferase type 11 (IPR013216),Sterol methyltransferase C-terminal (IPR013705);NIAS_FLcDNA=J023111D19;Oryzabase=13802;TENOR=Os07t0206700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	5755022	5756651	.	-	.	Parent=Os07t0206700-02
Chr07	irgsp1_rep	CDS	5754941	5755021	.	-	0	Parent=Os07t0206700-02
Chr07	irgsp1_rep	CDS	5754333	5754406	.	-	0	Parent=Os07t0206700-02
Chr07	irgsp1_rep	CDS	5754129	5754213	.	-	1	Parent=Os07t0206700-02
Chr07	irgsp1_rep	CDS	5753978	5754033	.	-	0	Parent=Os07t0206700-02
Chr07	irgsp1_rep	CDS	5753557	5753611	.	-	1	Parent=Os07t0206700-02
Chr07	irgsp1_rep	CDS	5753367	5753414	.	-	0	Parent=Os07t0206700-02
Chr07	irgsp1_rep	CDS	5753033	5753116	.	-	0	Parent=Os07t0206700-02
Chr07	irgsp1_rep	CDS	5752738	5752938	.	-	0	Parent=Os07t0206700-02
Chr07	irgsp1_rep	CDS	5752398	5752523	.	-	0	Parent=Os07t0206700-02
Chr07	irgsp1_rep	CDS	5751587	5751684	.	-	0	Parent=Os07t0206700-02
Chr07	irgsp1_rep	CDS	5751374	5751431	.	-	1	Parent=Os07t0206700-02
Chr07	irgsp1_rep	three_prime_UTR	5751353	5751373	.	-	.	Parent=Os07t0206700-02
Chr07	irgsp1_rep	three_prime_UTR	5750998	5751264	.	-	.	Parent=Os07t0206700-02
Chr07	irgsp1_rep	mRNA	5763808	5768526	.	+	.	ID=Os07t0206750-01;Name=Os07t0206750-01;Locus_id=Os07g0206750;Note=Hypothetical gene.;Transcript_evidence=AK288813 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090072G11;TENOR=Os07t0206750-01;KEGG=Os07t0206750-01
Chr07	irgsp1_rep	five_prime_UTR	5763808	5764245	.	+	.	Parent=Os07t0206750-01
Chr07	irgsp1_rep	five_prime_UTR	5764351	5767717	.	+	.	Parent=Os07t0206750-01
Chr07	irgsp1_rep	CDS	5767718	5768011	.	+	0	Parent=Os07t0206750-01
Chr07	irgsp1_rep	three_prime_UTR	5768012	5768526	.	+	.	Parent=Os07t0206750-01
Chr07	irgsp1_rep	mRNA	5763917	5768534	.	-	.	ID=Os07t0206800-00;Name=Os07t0206800-00;Locus_id=Os07g0206800;Note=Hypothetical conserved gene.;Transcript_evidence=CT836055 (DDBJ%2C Best hit);ORF_evidence=NP_001059155.1 (RefSeq);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);TENOR=Os07t0206800-00;KEGG=Os07t0206800-00
Chr07	irgsp1_rep	five_prime_UTR	5768491	5768534	.	-	.	Parent=Os07t0206800-00
Chr07	irgsp1_rep	CDS	5768338	5768490	.	-	0	Parent=Os07t0206800-00
Chr07	irgsp1_rep	CDS	5767786	5768328	.	-	0	Parent=Os07t0206800-00
Chr07	irgsp1_rep	CDS	5764352	5764420	.	-	0	Parent=Os07t0206800-00
Chr07	irgsp1_rep	three_prime_UTR	5764351	5764351	.	-	.	Parent=Os07t0206800-00
Chr07	irgsp1_rep	three_prime_UTR	5763917	5764245	.	-	.	Parent=Os07t0206800-00
Chr07	irgsp1_rep	mRNA	5770675	5771150	.	-	.	ID=Os07t0206850-00;Name=Os07t0206850-00;Locus_id=Os07g0206850;Note=Hypothetical gene.;Transcript_evidence=EU949280 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0206850-00
Chr07	irgsp1_rep	CDS	5770675	5771150	.	-	0	Parent=Os07t0206850-00
Chr07	irgsp1_rep	mRNA	5770888	5771447	.	+	.	ID=Os07t0206900-01;Name=Os07t0206900-01;Locus_id=Os07g0206900;Note=Protein of unknown function DUF642 domain containing protein.;Transcript_evidence=AK107761 (DDBJ%2C Best hit);ORF_evidence=B8B8I6 (UniProt);InterPro=Protein of unknown function DUF642 (IPR006946);NIAS_FLcDNA=002-133-A09;TENOR=Os07t0206900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	5770888	5770888	.	+	.	Parent=Os07t0206900-01
Chr07	irgsp1_rep	CDS	5770889	5771185	.	+	0	Parent=Os07t0206900-01
Chr07	irgsp1_rep	three_prime_UTR	5771186	5771447	.	+	.	Parent=Os07t0206900-01
Chr07	irgsp1_rep	mRNA	5773958	5777483	.	-	.	ID=Os07t0207100-01;Name=Os07t0207100-01;Locus_id=Os07g0207100;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK111823 (DDBJ%2C Best hit);ORF_evidence=Q6ZIW9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023048C13;Expression=AK111823;TENOR=Os07t0207100-01;KEGG=Os07t0207100-01
Chr07	irgsp1_rep	five_prime_UTR	5777426	5777483	.	-	.	Parent=Os07t0207100-01
Chr07	irgsp1_rep	CDS	5774887	5777425	.	-	0	Parent=Os07t0207100-01
Chr07	irgsp1_rep	CDS	5774462	5774787	.	-	2	Parent=Os07t0207100-01
Chr07	irgsp1_rep	three_prime_UTR	5773958	5774461	.	-	.	Parent=Os07t0207100-01
Chr07	irgsp1_rep	mRNA	5787338	5787867	.	-	.	ID=Os07t0207301-00;Name=Os07t0207301-00;Locus_id=Os07g0207301;Note=Hypothetical gene.;Transcript_evidence=BT087027 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0207301-00;KEGG=Os07t0207301-00
Chr07	irgsp1_rep	five_prime_UTR	5787866	5787867	.	-	.	Parent=Os07t0207301-00
Chr07	irgsp1_rep	CDS	5787338	5787865	.	-	0	Parent=Os07t0207301-00
Chr07	irgsp1_rep	mRNA	5787547	5789223	.	+	.	ID=Os07t0207400-01;Name=Os07t0207400-01;Locus_id=Os07g0207400;Note=Similar to RF12 protein (Fragment).;Transcript_evidence=AK063732 (DDBJ%2C Best hit);ORF_evidence=B6TNR8 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: small ribosomal subunit (GO:0015935),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S5 (IPR000851),Ribosomal protein S5%2C C-terminal (IPR005324),Ribosomal protein S5%2C eukaryotic/archaeal (IPR005711),Ribosomal protein S5%2C N-terminal (IPR013810),Double-stranded RNA-binding-like (IPR014720),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=001-120-E09;Expression=AK063732;TENOR=Os07t0207400-01;KEGG=Os07t0207400-01
Chr07	irgsp1_rep	five_prime_UTR	5787547	5787547	.	+	.	Parent=Os07t0207400-01
Chr07	irgsp1_rep	CDS	5787548	5787886	.	+	0	Parent=Os07t0207400-01
Chr07	irgsp1_rep	CDS	5788695	5788853	.	+	0	Parent=Os07t0207400-01
Chr07	irgsp1_rep	three_prime_UTR	5788854	5789223	.	+	.	Parent=Os07t0207400-01
Chr07	irgsp1_rep	mRNA	5806574	5811087	.	+	.	ID=Os07t0207700-01;Name=Os07t0207700-01;Locus_id=Os07g0207700;RAP-DB Gene Symbol Synonym(s)=SH-H%2C sh-h%2C OsCPL1;RAP-DB Gene Name Synonym(s)=SHATTERING-H%2C carboxy-terminal domain phosphatase-like 1;CGSNL Gene Symbol=SH-H;CGSNL Gene Name=SHATTERING-H;Oryzabase Gene Symbol Synonym(s)=sh-h%2C OsCPL1;Oryzabase Gene Name Synonym(s)=carboxy-terminal domain phosphatase-like 1;Note=Protein containing CTD phosphatase domain%2C Seed shattering;Transcript_evidence=GQ328745 (DDBJ);ORF_evidence=C7EYT0 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: phosphatase activity (GO:0016791);InterPro=NLI interacting factor (IPR004274),Dullard phosphatase domain%2C eukaryotic (IPR011948),HAD-like domain (IPR023214);Manual Curation=February 5%2C 2010;Literature_PMID=16582442,19807881;Oryzabase=8733;TENOR=Os07t0207700-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	5806574	5806727	.	+	0	Parent=Os07t0207700-01
Chr07	irgsp1_rep	CDS	5807502	5807626	.	+	2	Parent=Os07t0207700-01
Chr07	irgsp1_rep	CDS	5808016	5808112	.	+	0	Parent=Os07t0207700-01
Chr07	irgsp1_rep	CDS	5808796	5809269	.	+	2	Parent=Os07t0207700-01
Chr07	irgsp1_rep	CDS	5809865	5810202	.	+	2	Parent=Os07t0207700-01
Chr07	irgsp1_rep	CDS	5810887	5811087	.	+	0	Parent=Os07t0207700-01
Chr07	irgsp1_rep	mRNA	5805388	5810516	.	+	.	ID=Os07t0207700-02;Name=Os07t0207700-02;Locus_id=Os07g0207700;CGSNL Gene Symbol=SH-H;CGSNL Gene Name=SHATTERING-H;Oryzabase Gene Symbol Synonym(s)=sh-h%2C OsCPL1;Oryzabase Gene Name Synonym(s)=carboxy-terminal domain phosphatase-like 1;Note=Similar to CTD phosphatase-like protein.;Transcript_evidence=AK109769 (DDBJ%2C Best hit);ORF_evidence=C7EYT3 (UniProt);NIAS_FLcDNA=002-147-A05;Oryzabase=8733;Expression=AK109769;TENOR=Os07t0207700-02;KEGG=Os07t0207700-02
Chr07	irgsp1_rep	five_prime_UTR	5805388	5805513	.	+	.	Parent=Os07t0207700-02
Chr07	irgsp1_rep	five_prime_UTR	5805625	5805690	.	+	.	Parent=Os07t0207700-02
Chr07	irgsp1_rep	five_prime_UTR	5806462	5806573	.	+	.	Parent=Os07t0207700-02
Chr07	irgsp1_rep	CDS	5806574	5806727	.	+	0	Parent=Os07t0207700-02
Chr07	irgsp1_rep	CDS	5807502	5807626	.	+	2	Parent=Os07t0207700-02
Chr07	irgsp1_rep	CDS	5808019	5808112	.	+	0	Parent=Os07t0207700-02
Chr07	irgsp1_rep	CDS	5808796	5809253	.	+	2	Parent=Os07t0207700-02
Chr07	irgsp1_rep	CDS	5809865	5810140	.	+	0	Parent=Os07t0207700-02
Chr07	irgsp1_rep	three_prime_UTR	5810141	5810516	.	+	.	Parent=Os07t0207700-02
Chr07	irgsp1_rep	mRNA	5805378	5808270	.	+	.	ID=Os07t0207700-03;Name=Os07t0207700-03;Locus_id=Os07g0207700;CGSNL Gene Symbol=SH-H;CGSNL Gene Name=SHATTERING-H;Oryzabase Gene Symbol Synonym(s)=sh-h%2C OsCPL1;Oryzabase Gene Name Synonym(s)=carboxy-terminal domain phosphatase-like 1;Note=Similar to CTD phosphatase-like protein.;Transcript_evidence=AK119292 (DDBJ%2C Best hit);ORF_evidence=C7EYT4 (UniProt);NIAS_FLcDNA=001-130-D09;Oryzabase=8733;Expression=AK119292;TENOR=Os07t0207700-03
Chr07	irgsp1_rep	five_prime_UTR	5805378	5807988	.	+	.	Parent=Os07t0207700-03
Chr07	irgsp1_rep	CDS	5807989	5808186	.	+	0	Parent=Os07t0207700-03
Chr07	irgsp1_rep	three_prime_UTR	5808187	5808270	.	+	.	Parent=Os07t0207700-03
Chr07	irgsp1_rep	mRNA	5812564	5818510	.	-	.	ID=Os07t0207800-00;Name=Os07t0207800-00;Locus_id=Os07g0207800;Note=Similar to PGAZAT (POLYGALACTURONASE ABSCISSION ZONE A. THALIANA)%3B polygalacturonase.;Transcript_evidence=AK335451 (DDBJ);ORF_evidence=NP_850359.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);TENOR=Os07t0207800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	5817419	5818510	.	-	0	Parent=Os07t0207800-00
Chr07	irgsp1_rep	CDS	5812564	5813145	.	-	0	Parent=Os07t0207800-00
Chr07	irgsp1_rep	mRNA	5819764	5821777	.	-	.	ID=Os07t0208000-01;Name=Os07t0208000-01;Locus_id=Os07g0208000;Oryzabase Gene Name Synonym(s)=Ribosomal protein S24;Note=Similar to 40S ribosomal protein S15A.;Transcript_evidence=AK062943 (DDBJ%2C Best hit);ORF_evidence=A6N079 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S8 (IPR000630);NIAS_FLcDNA=001-109-B12;Oryzabase=17692;Expression=AK062943;TENOR=Os07t0208000-01;KEGG=Os07t0208000-01
Chr07	irgsp1_rep	five_prime_UTR	5821685	5821777	.	-	.	Parent=Os07t0208000-01
Chr07	irgsp1_rep	five_prime_UTR	5820672	5820676	.	-	.	Parent=Os07t0208000-01
Chr07	irgsp1_rep	CDS	5820539	5820671	.	-	0	Parent=Os07t0208000-01
Chr07	irgsp1_rep	CDS	5820257	5820417	.	-	2	Parent=Os07t0208000-01
Chr07	irgsp1_rep	CDS	5820016	5820114	.	-	0	Parent=Os07t0208000-01
Chr07	irgsp1_rep	three_prime_UTR	5819764	5820015	.	-	.	Parent=Os07t0208000-01
Chr07	irgsp1_rep	mRNA	5820020	5820677	.	+	.	ID=Os07t0208050-00;Name=Os07t0208050-00;Locus_id=Os07g0208050;Note=Non-protein coding transcript.;Transcript_evidence=BT016937 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0208050-00
Chr07	irgsp1_rep	exon	5820020	5820131	.	+	.	Parent=Os07t0208050-00
Chr07	irgsp1_rep	exon	5820272	5820412	.	+	.	Parent=Os07t0208050-00
Chr07	irgsp1_rep	exon	5820533	5820677	.	+	.	Parent=Os07t0208050-00
Chr07	irgsp1_rep	mRNA	5822759	5824346	.	+	.	ID=Os07t0208100-01;Name=Os07t0208100-01;Locus_id=Os07g0208100;Oryzabase Gene Symbol Synonym(s)=OsPGL16%2C PGL16;Oryzabase Gene Name Synonym(s)=Polygalacturonases-Like 16%2C PG-like 16;Note=Similar to Polygalacturonase A.;Transcript_evidence=AK119482 (DDBJ%2C Best hit);ORF_evidence=Q9M6S2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=001-134-C02;Oryzabase=22293;TENOR=Os07t0208100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	5822759	5823080	.	+	.	Parent=Os07t0208100-01
Chr07	irgsp1_rep	CDS	5823081	5823623	.	+	0	Parent=Os07t0208100-01
Chr07	irgsp1_rep	CDS	5823747	5824007	.	+	0	Parent=Os07t0208100-01
Chr07	irgsp1_rep	three_prime_UTR	5824008	5824113	.	+	.	Parent=Os07t0208100-01
Chr07	irgsp1_rep	three_prime_UTR	5824198	5824346	.	+	.	Parent=Os07t0208100-01
Chr07	irgsp1_rep	mRNA	5852783	5858718	.	-	.	ID=Os07t0208500-01;Name=Os07t0208500-01;Locus_id=Os07g0208500;CGSNL Gene Symbol=CESA8;CGSNL Gene Name=CELLULOSE SYNTHASE A8;Oryzabase Gene Symbol Synonym(s)=OsCesA8%2C OsCESA8%2C OS_CESA08%2C CesA8;Oryzabase Gene Name Synonym(s)=Cellulose synthase A catalytic subunit 8 [UDP-forming]%2C Cellulose synthase A catalytic subunit 8%2C CELLULOSE SYNTHASE8;Note=Similar to Cellulose synthase-4.;Transcript_evidence=AK072356 (DDBJ%2C Best hit);ORF_evidence=Q4U0Z7 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J023059I02;Oryzabase=9058;Expression=AK072356;TENOR=Os07t0208500-01;KEGG=Os07t0208500-01 (EC:2.4.1.12)
Chr07	irgsp1_rep	five_prime_UTR	5858377	5858718	.	-	.	Parent=Os07t0208500-01
Chr07	irgsp1_rep	five_prime_UTR	5858185	5858277	.	-	.	Parent=Os07t0208500-01
Chr07	irgsp1_rep	CDS	5858161	5858184	.	-	0	Parent=Os07t0208500-01
Chr07	irgsp1_rep	CDS	5857838	5858030	.	-	0	Parent=Os07t0208500-01
Chr07	irgsp1_rep	CDS	5857292	5857542	.	-	2	Parent=Os07t0208500-01
Chr07	irgsp1_rep	CDS	5857112	5857211	.	-	0	Parent=Os07t0208500-01
Chr07	irgsp1_rep	CDS	5856831	5857020	.	-	2	Parent=Os07t0208500-01
Chr07	irgsp1_rep	CDS	5856102	5856368	.	-	1	Parent=Os07t0208500-01
Chr07	irgsp1_rep	CDS	5855665	5856010	.	-	1	Parent=Os07t0208500-01
Chr07	irgsp1_rep	CDS	5855438	5855575	.	-	0	Parent=Os07t0208500-01
Chr07	irgsp1_rep	CDS	5855205	5855330	.	-	0	Parent=Os07t0208500-01
Chr07	irgsp1_rep	CDS	5854900	5855112	.	-	0	Parent=Os07t0208500-01
Chr07	irgsp1_rep	CDS	5854480	5854738	.	-	0	Parent=Os07t0208500-01
Chr07	irgsp1_rep	CDS	5854187	5854389	.	-	2	Parent=Os07t0208500-01
Chr07	irgsp1_rep	CDS	5853722	5854072	.	-	0	Parent=Os07t0208500-01
Chr07	irgsp1_rep	CDS	5853055	5853639	.	-	0	Parent=Os07t0208500-01
Chr07	irgsp1_rep	three_prime_UTR	5852783	5853054	.	-	.	Parent=Os07t0208500-01
Chr07	irgsp1_rep	mRNA	5852783	5854219	.	-	.	ID=Os07t0208500-02;Name=Os07t0208500-02;Locus_id=Os07g0208500;CGSNL Gene Symbol=CESA8;CGSNL Gene Name=CELLULOSE SYNTHASE A8;Oryzabase Gene Symbol Synonym(s)=OsCesA8%2C OsCESA8%2C OS_CESA08%2C CesA8;Oryzabase Gene Name Synonym(s)=Cellulose synthase A catalytic subunit 8 [UDP-forming]%2C Cellulose synthase A catalytic subunit 8%2C CELLULOSE SYNTHASE8;Note=Cellulose synthase domain containing protein.;Transcript_evidence=AK062007 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150);NIAS_FLcDNA=001-043-E01;Oryzabase=9058;TENOR=Os07t0208500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	5854187	5854219	.	-	.	Parent=Os07t0208500-02
Chr07	irgsp1_rep	five_prime_UTR	5854022	5854072	.	-	.	Parent=Os07t0208500-02
Chr07	irgsp1_rep	CDS	5853722	5854021	.	-	0	Parent=Os07t0208500-02
Chr07	irgsp1_rep	CDS	5853055	5853639	.	-	0	Parent=Os07t0208500-02
Chr07	irgsp1_rep	three_prime_UTR	5852783	5853054	.	-	.	Parent=Os07t0208500-02
Chr07	irgsp1_rep	mRNA	5853014	5853641	.	+	.	ID=Os07t0208533-00;Name=Os07t0208533-00;Locus_id=Os07g0208533;Note=Hypothetical gene.;Transcript_evidence=BT019277 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0208533-00;KEGG=Os07t0208533-00
Chr07	irgsp1_rep	five_prime_UTR	5853014	5853064	.	+	.	Parent=Os07t0208533-00
Chr07	irgsp1_rep	CDS	5853065	5853286	.	+	0	Parent=Os07t0208533-00
Chr07	irgsp1_rep	three_prime_UTR	5853287	5853641	.	+	.	Parent=Os07t0208533-00
Chr07	irgsp1_rep	mRNA	5855693	5857002	.	+	.	ID=Os07t0208566-00;Name=Os07t0208566-00;Locus_id=Os07g0208566;Note=Non-protein coding transcript.;Transcript_evidence=U48693 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0208566-00
Chr07	irgsp1_rep	exon	5855693	5856003	.	+	.	Parent=Os07t0208566-00
Chr07	irgsp1_rep	exon	5856094	5856356	.	+	.	Parent=Os07t0208566-00
Chr07	irgsp1_rep	exon	5856817	5857002	.	+	.	Parent=Os07t0208566-00
Chr07	irgsp1_rep	mRNA	5864737	5865808	.	+	.	ID=Os07t0208600-01;Name=Os07t0208600-01;Locus_id=Os07g0208600;CGSNL Gene Symbol=REM4.3;CGSNL Gene Name=REMORIN 4.3;Oryzabase Gene Symbol Synonym(s)=OsREM4.3;Oryzabase Gene Name Synonym(s)=Remorin 4.3%2C remorin group 4 member 3;Note=Remorin%2C C-terminal region domain containing protein.;Transcript_evidence=AK067003 (DDBJ%2C Best hit);ORF_evidence=NP_001152428.1 (RefSeq);InterPro=Remorin%2C C-terminal (IPR005516);NIAS_FLcDNA=J013094N02;Oryzabase=20274;Expression=AK067003;TENOR=Os07t0208600-01;KEGG=Os07t0208600-01
Chr07	irgsp1_rep	five_prime_UTR	5864737	5864829	.	+	.	Parent=Os07t0208600-01
Chr07	irgsp1_rep	CDS	5864830	5865420	.	+	0	Parent=Os07t0208600-01
Chr07	irgsp1_rep	CDS	5865512	5865709	.	+	0	Parent=Os07t0208600-01
Chr07	irgsp1_rep	three_prime_UTR	5865710	5865808	.	+	.	Parent=Os07t0208600-01
Chr07	irgsp1_rep	mRNA	5864739	5865707	.	-	.	ID=Os07t0208700-00;Name=Os07t0208700-00;Locus_id=Os07g0208700;Note=Hypothetical protein.;Transcript_evidence=AK361927 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0208700-00
Chr07	irgsp1_rep	five_prime_UTR	5865363	5865707	.	-	.	Parent=Os07t0208700-00
Chr07	irgsp1_rep	CDS	5864817	5865362	.	-	0	Parent=Os07t0208700-00
Chr07	irgsp1_rep	three_prime_UTR	5864739	5864816	.	-	.	Parent=Os07t0208700-00
Chr07	irgsp1_rep	mRNA	5876973	5879800	.	+	.	ID=Os07t0208801-00;Name=Os07t0208801-00;Locus_id=Os07g0208801;Note=Similar to predicted protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FW45 (UniProt);TENOR=Os07t0208801-00;KEGG=Os07t0208801-00
Chr07	irgsp1_rep	CDS	5876973	5877592	.	+	0	Parent=Os07t0208801-00
Chr07	irgsp1_rep	CDS	5878218	5878277	.	+	1	Parent=Os07t0208801-00
Chr07	irgsp1_rep	CDS	5878483	5878522	.	+	1	Parent=Os07t0208801-00
Chr07	irgsp1_rep	CDS	5878615	5878708	.	+	0	Parent=Os07t0208801-00
Chr07	irgsp1_rep	CDS	5879430	5879800	.	+	2	Parent=Os07t0208801-00
Chr07	irgsp1_rep	mRNA	5880098	5884353	.	+	.	ID=Os07t0208900-01;Name=Os07t0208900-01;Locus_id=Os07g0208900;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Similar to transporter-related.;Transcript_evidence=AK121714 (DDBJ%2C Best hit);ORF_evidence=NP_195397.1 (RefSeq);NIAS_FLcDNA=J033079D24;Oryzabase=23673;TENOR=Os07t0208900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	5880098	5880259	.	+	.	Parent=Os07t0208900-01
Chr07	irgsp1_rep	CDS	5880260	5880324	.	+	0	Parent=Os07t0208900-01
Chr07	irgsp1_rep	CDS	5881863	5881965	.	+	1	Parent=Os07t0208900-01
Chr07	irgsp1_rep	CDS	5882057	5882101	.	+	0	Parent=Os07t0208900-01
Chr07	irgsp1_rep	three_prime_UTR	5882102	5882486	.	+	.	Parent=Os07t0208900-01
Chr07	irgsp1_rep	three_prime_UTR	5883112	5883287	.	+	.	Parent=Os07t0208900-01
Chr07	irgsp1_rep	three_prime_UTR	5883374	5884353	.	+	.	Parent=Os07t0208900-01
Chr07	irgsp1_rep	mRNA	5882073	5884357	.	+	.	ID=Os07t0208900-02;Name=Os07t0208900-02;Locus_id=Os07g0208900;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Similar to transporter-related.;Transcript_evidence=AK058996 (DDBJ%2C Best hit);ORF_evidence=NP_195397.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=001-020-G03;Oryzabase=23673;TENOR=Os07t0208900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	5882073	5882073	.	+	.	Parent=Os07t0208900-02
Chr07	irgsp1_rep	CDS	5882074	5882486	.	+	0	Parent=Os07t0208900-02
Chr07	irgsp1_rep	CDS	5883112	5883287	.	+	1	Parent=Os07t0208900-02
Chr07	irgsp1_rep	CDS	5883374	5883972	.	+	2	Parent=Os07t0208900-02
Chr07	irgsp1_rep	three_prime_UTR	5883973	5884357	.	+	.	Parent=Os07t0208900-02
Chr07	irgsp1_rep	mRNA	5883104	5883410	.	-	.	ID=Os07t0208950-00;Name=Os07t0208950-00;Locus_id=Os07g0208950;Note=Non-protein coding transcript.;Transcript_evidence=EU949240 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0208950-00
Chr07	irgsp1_rep	exon	5883104	5883410	.	-	.	Parent=Os07t0208950-00
Chr07	irgsp1_rep	mRNA	5885350	5889810	.	+	.	ID=Os07t0209000-01;Name=Os07t0209000-01;Locus_id=Os07g0209000;RAP-DB Gene Symbol Synonym(s)=OsDGL1;RAP-DB Gene Name Synonym(s)=dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit%2C dolichyl-diphosphooligosaccharide-protein glycosyltransferase 1%2C Glycosyltransferase 48 kDa subunit precursor;Oryzabase Gene Symbol Synonym(s)=OsDGL1;Oryzabase Gene Name Synonym(s)=dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit%2C dolichyl-diphosphooligosaccharide-protein glycosyltransferase 1%2C Glycosyltransferase 48 kDa subunit precursor;Note=Dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48 kDa subunit precursor%2C N-glycosylation%2C Root development;Transcript_evidence=AK059111;ORF_evidence=Q6ZLK0;GO=Biological Process: protein N-linked glycosylation via asparagine (GO:0018279),Molecular Function: dolichyl-diphosphooligosaccharide-protein glycotransferase activity (GO:0004579),Cellular Component: endoplasmic reticulum membrane (GO:0005789);InterPro=Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit WBP1 (IPR005013);NIAS_FLcDNA=001-022-E02,J033003F07;Manual Curation=December 8%2C 2014;Literature_PMID=23220823;Oryzabase=14346;TENOR=Os07t0209000-01
Chr07	irgsp1_rep	five_prime_UTR	5885350	5885397	.	+	.	Parent=Os07t0209000-01
Chr07	irgsp1_rep	CDS	5885398	5885677	.	+	0	Parent=Os07t0209000-01
Chr07	irgsp1_rep	CDS	5886238	5886374	.	+	2	Parent=Os07t0209000-01
Chr07	irgsp1_rep	CDS	5886465	5886590	.	+	0	Parent=Os07t0209000-01
Chr07	irgsp1_rep	CDS	5887016	5887069	.	+	0	Parent=Os07t0209000-01
Chr07	irgsp1_rep	CDS	5887192	5887305	.	+	0	Parent=Os07t0209000-01
Chr07	irgsp1_rep	CDS	5887743	5887798	.	+	0	Parent=Os07t0209000-01
Chr07	irgsp1_rep	CDS	5887865	5887906	.	+	1	Parent=Os07t0209000-01
Chr07	irgsp1_rep	CDS	5888428	5888503	.	+	1	Parent=Os07t0209000-01
Chr07	irgsp1_rep	CDS	5888613	5888684	.	+	0	Parent=Os07t0209000-01
Chr07	irgsp1_rep	CDS	5888756	5888881	.	+	0	Parent=Os07t0209000-01
Chr07	irgsp1_rep	CDS	5888965	5889069	.	+	0	Parent=Os07t0209000-01
Chr07	irgsp1_rep	CDS	5889181	5889264	.	+	0	Parent=Os07t0209000-01
Chr07	irgsp1_rep	CDS	5889484	5889531	.	+	0	Parent=Os07t0209000-01
Chr07	irgsp1_rep	three_prime_UTR	5889532	5889810	.	+	.	Parent=Os07t0209000-01
Chr07	irgsp1_rep	mRNA	5889645	5889923	.	+	.	ID=Os07t0209000-02;Name=Os07t0209000-02;Locus_id=Os07g0209000;Oryzabase Gene Symbol Synonym(s)=OsDGL1;Oryzabase Gene Name Synonym(s)=dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit%2C dolichyl-diphosphooligosaccharide-protein glycosyltransferase 1%2C Glycosyltransferase 48 kDa subunit precursor;Note=Non-protein coding transcript.;Transcript_evidence=AK058399 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-015-B04;Oryzabase=14346;TENOR=Os07t0209000-02
Chr07	irgsp1_rep	exon	5889645	5889923	.	+	.	Parent=Os07t0209000-02
Chr07	irgsp1_rep	mRNA	5890575	5894128	.	-	.	ID=Os07t0209100-01;Name=Os07t0209100-01;Locus_id=Os07g0209100;Note=Similar to Seed imbibition protein (Fragment).;Transcript_evidence=AK120944 (DDBJ%2C Best hit);ORF_evidence=D2KZ11 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Raffinose synthase (IPR008811),Aldolase-type TIM barrel (IPR013785),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J023037N02;Oryzabase=15269;Expression=AK120944;TENOR=Os07t0209100-01;KEGG=Os07t0209100-01
Chr07	irgsp1_rep	five_prime_UTR	5893955	5894128	.	-	.	Parent=Os07t0209100-01
Chr07	irgsp1_rep	five_prime_UTR	5893809	5893863	.	-	.	Parent=Os07t0209100-01
Chr07	irgsp1_rep	CDS	5893618	5893808	.	-	0	Parent=Os07t0209100-01
Chr07	irgsp1_rep	CDS	5893253	5893509	.	-	1	Parent=Os07t0209100-01
Chr07	irgsp1_rep	CDS	5893033	5893123	.	-	2	Parent=Os07t0209100-01
Chr07	irgsp1_rep	CDS	5892858	5892906	.	-	1	Parent=Os07t0209100-01
Chr07	irgsp1_rep	CDS	5891854	5892741	.	-	0	Parent=Os07t0209100-01
Chr07	irgsp1_rep	CDS	5891569	5891771	.	-	0	Parent=Os07t0209100-01
Chr07	irgsp1_rep	CDS	5890881	5891493	.	-	1	Parent=Os07t0209100-01
Chr07	irgsp1_rep	three_prime_UTR	5890575	5890880	.	-	.	Parent=Os07t0209100-01
Chr07	irgsp1_rep	mRNA	5890901	5893832	.	+	.	ID=Os07t0209201-00;Name=Os07t0209201-00;Locus_id=Os07g0209201;Note=Hypothetical protein.;Transcript_evidence=tplb0060c15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0209201-00
Chr07	irgsp1_rep	five_prime_UTR	5890901	5891491	.	+	.	Parent=Os07t0209201-00
Chr07	irgsp1_rep	five_prime_UTR	5891567	5891762	.	+	.	Parent=Os07t0209201-00
Chr07	irgsp1_rep	five_prime_UTR	5891840	5891853	.	+	.	Parent=Os07t0209201-00
Chr07	irgsp1_rep	CDS	5891854	5892743	.	+	0	Parent=Os07t0209201-00
Chr07	irgsp1_rep	CDS	5892852	5892978	.	+	1	Parent=Os07t0209201-00
Chr07	irgsp1_rep	three_prime_UTR	5892979	5892984	.	+	.	Parent=Os07t0209201-00
Chr07	irgsp1_rep	three_prime_UTR	5893243	5893511	.	+	.	Parent=Os07t0209201-00
Chr07	irgsp1_rep	three_prime_UTR	5893620	5893832	.	+	.	Parent=Os07t0209201-00
Chr07	irgsp1_rep	mRNA	5930850	5935137	.	+	.	ID=Os07t0209401-00;Name=Os07t0209401-00;Locus_id=Os07g0209401;Note=Similar to DNA polymerase.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FUS4 (UniProt);TENOR=Os07t0209401-00;KEGG=Os07t0209401-00
Chr07	irgsp1_rep	CDS	5930850	5931154	.	+	0	Parent=Os07t0209401-00
Chr07	irgsp1_rep	CDS	5934749	5934843	.	+	1	Parent=Os07t0209401-00
Chr07	irgsp1_rep	CDS	5934863	5935137	.	+	2	Parent=Os07t0209401-00
Chr07	irgsp1_rep	mRNA	5935165	5939024	.	+	.	ID=Os07t0209500-01;Name=Os07t0209500-01;Locus_id=Os07g0209500;Note=Similar to DNA polymerase.;Transcript_evidence=AK108416 (DDBJ%2C Best hit);ORF_evidence=B9FUS4 (UniProt);NIAS_FLcDNA=002-142-H08;TENOR=Os07t0209500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	5935165	5935322	.	+	.	Parent=Os07t0209500-01
Chr07	irgsp1_rep	CDS	5935323	5935445	.	+	0	Parent=Os07t0209500-01
Chr07	irgsp1_rep	CDS	5937486	5937624	.	+	0	Parent=Os07t0209500-01
Chr07	irgsp1_rep	CDS	5938294	5938325	.	+	2	Parent=Os07t0209500-01
Chr07	irgsp1_rep	three_prime_UTR	5938326	5939024	.	+	.	Parent=Os07t0209500-01
Chr07	irgsp1_rep	mRNA	5940038	5943934	.	-	.	ID=Os07t0209600-00;Name=Os07t0209600-00;Locus_id=Os07g0209600;Note=Similar to Zinc finger transcription factor ZF1.;Transcript_evidence=BT087256 (DDBJ);ORF_evidence=Q9AXE9 (UniProt);TENOR=Os07t0209600-00;KEGG=Os07t0209600-00
Chr07	irgsp1_rep	CDS	5943399	5943934	.	-	0	Parent=Os07t0209600-00
Chr07	irgsp1_rep	CDS	5940053	5940407	.	-	1	Parent=Os07t0209600-00
Chr07	irgsp1_rep	three_prime_UTR	5940038	5940052	.	-	.	Parent=Os07t0209600-00
Chr07	irgsp1_rep	mRNA	5945271	5946050	.	+	.	ID=Os07t0209700-01;Name=Os07t0209700-01;Locus_id=Os07g0209700;Note=Protein of unknown function DUF1677%2C Oryza sativa domain containing protein.;Transcript_evidence=AK070654 (DDBJ%2C Best hit);ORF_evidence=A3BHQ5 (UniProt);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);NIAS_FLcDNA=J023057G20;TENOR=Os07t0209700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	5945271	5945957	.	+	0	Parent=Os07t0209700-01
Chr07	irgsp1_rep	three_prime_UTR	5945958	5946050	.	+	.	Parent=Os07t0209700-01
Chr07	irgsp1_rep	mRNA	5951532	5955708	.	+	.	ID=Os07t0209800-01;Name=Os07t0209800-01;Locus_id=Os07g0209800;CGSNL Gene Symbol=BZIP59;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 59;Oryzabase Gene Symbol Synonym(s)=OsbZIP59%2C BIP125;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 59%2C brassinosteroid receptor kinase (BRI1)-interacting protein 125%2C BRI1-interacting protein 125%2C brassinosteroid receptor kinase-interacting protein 125;Note=Similar to HALF-1.;Transcript_evidence=AK289179 (DDBJ%2C Best hit);ORF_evidence=Q761Y9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);NIAS_FLcDNA=J100028J17;Oryzabase=10141;TENOR=Os07t0209800-01;KEGG=Os07t0209800-01
Chr07	irgsp1_rep	CDS	5951532	5951705	.	+	0	Parent=Os07t0209800-01
Chr07	irgsp1_rep	CDS	5951810	5951920	.	+	0	Parent=Os07t0209800-01
Chr07	irgsp1_rep	CDS	5951999	5952150	.	+	0	Parent=Os07t0209800-01
Chr07	irgsp1_rep	CDS	5952251	5952308	.	+	1	Parent=Os07t0209800-01
Chr07	irgsp1_rep	CDS	5952416	5952464	.	+	0	Parent=Os07t0209800-01
Chr07	irgsp1_rep	CDS	5952562	5952806	.	+	2	Parent=Os07t0209800-01
Chr07	irgsp1_rep	CDS	5952977	5953054	.	+	0	Parent=Os07t0209800-01
Chr07	irgsp1_rep	CDS	5954926	5955051	.	+	0	Parent=Os07t0209800-01
Chr07	irgsp1_rep	CDS	5955157	5955330	.	+	0	Parent=Os07t0209800-01
Chr07	irgsp1_rep	three_prime_UTR	5955331	5955708	.	+	.	Parent=Os07t0209800-01
Chr07	irgsp1_rep	mRNA	5957210	5957259	.	+	.	ID=Os07t0209900-00;Name=Os07t0209900-00;Locus_id=Os07g0209900;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0209900-00
Chr07	irgsp1_rep	exon	5957210	5957259	.	+	.	Parent=Os07t0209900-00
Chr07	irgsp1_rep	mRNA	5972103	5976618	.	+	.	ID=Os07t0210000-01;Name=Os07t0210000-01;Locus_id=Os07g0210000;CGSNL Gene Symbol=EXO70FX10;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX10;Oryzabase Gene Symbol Synonym(s)=OsEXO70FX10%2C OsExo70FX10%2C OrysaFX10_Exo70;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein FX10;Note=Hypothetical conserved gene.;Transcript_evidence=AK066578 (DDBJ%2C Best hit);ORF_evidence=Q6Z5V6 (UniProt);GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exo70 exocyst complex subunit (IPR004140),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=J013068K15;Oryzabase=20352;Expression=AK066578;TENOR=Os07t0210000-01;KEGG=Os07t0210000-01
Chr07	irgsp1_rep	five_prime_UTR	5972103	5972136	.	+	.	Parent=Os07t0210000-01
Chr07	irgsp1_rep	CDS	5972137	5972407	.	+	0	Parent=Os07t0210000-01
Chr07	irgsp1_rep	CDS	5972934	5973055	.	+	2	Parent=Os07t0210000-01
Chr07	irgsp1_rep	CDS	5973259	5973368	.	+	0	Parent=Os07t0210000-01
Chr07	irgsp1_rep	CDS	5973493	5973597	.	+	1	Parent=Os07t0210000-01
Chr07	irgsp1_rep	CDS	5975004	5976498	.	+	1	Parent=Os07t0210000-01
Chr07	irgsp1_rep	three_prime_UTR	5976499	5976618	.	+	.	Parent=Os07t0210000-01
Chr07	irgsp1_rep	mRNA	5972139	5976618	.	+	.	ID=Os07t0210000-02;Name=Os07t0210000-02;Locus_id=Os07g0210000;CGSNL Gene Symbol=EXO70FX10;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX10;Oryzabase Gene Symbol Synonym(s)=OsEXO70FX10%2C OsExo70FX10%2C OrysaFX10_Exo70;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein FX10;Note=Exo70 exocyst complex subunit domain containing protein.;Transcript_evidence=AK068054 (DDBJ%2C Best hit);ORF_evidence=B9FW51 (UniProt);GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exo70 exocyst complex subunit (IPR004140),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=J013129O13;Oryzabase=20352;TENOR=Os07t0210000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	5972139	5972139	.	+	.	Parent=Os07t0210000-02
Chr07	irgsp1_rep	CDS	5972140	5972407	.	+	0	Parent=Os07t0210000-02
Chr07	irgsp1_rep	CDS	5972937	5973055	.	+	2	Parent=Os07t0210000-02
Chr07	irgsp1_rep	CDS	5973259	5973368	.	+	0	Parent=Os07t0210000-02
Chr07	irgsp1_rep	CDS	5973493	5973502	.	+	1	Parent=Os07t0210000-02
Chr07	irgsp1_rep	CDS	5973581	5973597	.	+	0	Parent=Os07t0210000-02
Chr07	irgsp1_rep	CDS	5975004	5976498	.	+	1	Parent=Os07t0210000-02
Chr07	irgsp1_rep	three_prime_UTR	5976499	5976618	.	+	.	Parent=Os07t0210000-02
Chr07	irgsp1_rep	mRNA	5976882	5979068	.	-	.	ID=Os07t0210100-01;Name=Os07t0210100-01;Locus_id=Os07g0210100;CGSNL Gene Symbol=EXO70X4;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN X4;Oryzabase Gene Symbol Synonym(s)=OsEXO70X4%2C OsExo70X4%2C OrysaX4_Exo70;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein X4;Note=Exo70 exocyst complex subunit domain containing protein.;Transcript_evidence=AK070643 (DDBJ%2C Best hit);ORF_evidence=A2YJD7 (UniProt);GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exo70 exocyst complex subunit (IPR004140),Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=J023063I17;Oryzabase=20370;TENOR=Os07t0210100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	5978182	5979068	.	-	.	Parent=Os07t0210100-01
Chr07	irgsp1_rep	CDS	5977138	5978181	.	-	0	Parent=Os07t0210100-01
Chr07	irgsp1_rep	three_prime_UTR	5976882	5977137	.	-	.	Parent=Os07t0210100-01
Chr07	irgsp1_rep	mRNA	6000383	6002257	.	-	.	ID=Os07t0210800-00;Name=Os07t0210800-00;Locus_id=Os07g0210800;CGSNL Gene Symbol=MSL28;CGSNL Gene Name=MYB/SANT-LIKE 28;Oryzabase Gene Symbol Synonym(s)=OsMSL28;Oryzabase Gene Name Synonym(s)=Myb/SANT-LIKE 28;Note=Hypothetical conserved gene.;Transcript_evidence=AK106587 (DDBJ%2C Secondary hit);ORF_evidence=Q60DP5 (UniProt);InterPro=Myb/SANT-like domain (IPR024752);Oryzabase=22939;Expression=AK106587;TENOR=Os07t0210800-00;KEGG=Os07t0210800-00
Chr07	irgsp1_rep	five_prime_UTR	6002257	6002257	.	-	.	Parent=Os07t0210800-00
Chr07	irgsp1_rep	CDS	6002126	6002256	.	-	0	Parent=Os07t0210800-00
Chr07	irgsp1_rep	CDS	6001786	6001928	.	-	1	Parent=Os07t0210800-00
Chr07	irgsp1_rep	CDS	6001302	6001685	.	-	2	Parent=Os07t0210800-00
Chr07	irgsp1_rep	CDS	6001005	6001207	.	-	2	Parent=Os07t0210800-00
Chr07	irgsp1_rep	three_prime_UTR	6000383	6001004	.	-	.	Parent=Os07t0210800-00
Chr07	irgsp1_rep	mRNA	6017683	6020652	.	-	.	ID=Os07t0211000-00;Name=Os07t0211000-00;Locus_id=Os07g0211000;CGSNL Gene Symbol=EXO70X3;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN X3;Oryzabase Gene Symbol Synonym(s)=OsEXO70X3%2C OsExo70X3%2C OrysaX3_Exo70;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein X3;Note=Hypothetical conserved gene.;Transcript_evidence=CT836085 (DDBJ%2C Best hit);ORF_evidence=Q6Z5U3 (UniProt);GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exo70 exocyst complex subunit (IPR004140),Cullin repeat-like-containing domain (IPR016159);Oryzabase=20369;TENOR=Os07t0211000-00;KEGG=Os07t0211000-00
Chr07	irgsp1_rep	five_prime_UTR	6020196	6020652	.	-	.	Parent=Os07t0211000-00
Chr07	irgsp1_rep	CDS	6018987	6020195	.	-	0	Parent=Os07t0211000-00
Chr07	irgsp1_rep	three_prime_UTR	6017683	6018986	.	-	.	Parent=Os07t0211000-00
Chr07	irgsp1_rep	mRNA	6035953	6037209	.	+	.	ID=Os07t0211101-00;Name=Os07t0211101-00;Locus_id=Os07g0211101;Oryzabase Gene Symbol Synonym(s)=OsMed5_2%2C Med5_2;Oryzabase Gene Name Synonym(s)=Mediator 5_2;Note=Hypothetical conserved gene.;Transcript_evidence=EU954441 (DDBJ);ORF_evidence=XP_002880343.1 (RefSeq);Oryzabase=20993;TENOR=Os07t0211101-00;KEGG=Os07t0211101-00
Chr07	irgsp1_rep	five_prime_UTR	6035953	6036076	.	+	.	Parent=Os07t0211101-00
Chr07	irgsp1_rep	CDS	6036077	6036351	.	+	0	Parent=Os07t0211101-00
Chr07	irgsp1_rep	CDS	6037007	6037121	.	+	1	Parent=Os07t0211101-00
Chr07	irgsp1_rep	three_prime_UTR	6037122	6037209	.	+	.	Parent=Os07t0211101-00
Chr07	irgsp1_rep	mRNA	6042977	6044306	.	+	.	ID=Os07t0211200-01;Name=Os07t0211200-01;Locus_id=Os07g0211200;Oryzabase Gene Symbol Synonym(s)=OsMed5_2%2C Med5_2;Oryzabase Gene Name Synonym(s)=Mediator 5_2;Note=Similar to REF4 (REDUCED EPIDERMAL FLUORESCENCE 4).;Transcript_evidence=AK059515 (DDBJ%2C Best hit);ORF_evidence=NP_566125.4 (RefSeq);NIAS_FLcDNA=001-029-B11;Oryzabase=20993;TENOR=Os07t0211200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	6042977	6042977	.	+	.	Parent=Os07t0211200-01
Chr07	irgsp1_rep	CDS	6042978	6044102	.	+	0	Parent=Os07t0211200-01
Chr07	irgsp1_rep	three_prime_UTR	6044103	6044306	.	+	.	Parent=Os07t0211200-01
Chr07	irgsp1_rep	mRNA	6052570	6060083	.	+	.	ID=Os07t0211400-01;Name=Os07t0211400-01;Locus_id=Os07g0211400;CGSNL Gene Symbol=OSKAPP;CGSNL Gene Name=KINASE-ASSOCIATED TYPE 2C PROTEIN PHOSPHATASE;Oryzabase Gene Symbol Synonym(s)=OsKAPP%2C OsPP94%2C DLN179%2C OsDLN179;Oryzabase Gene Name Synonym(s)=kinase-associated type 2C protein phosphatase%2C kinase-associated PP%2C kinase associated protein phosphatase%2C Protein phosphatase 94%2C DLN repressor 179%2C DLN motif protein 179;Note=Similar to Kinase associated protein phosphatase.;Transcript_evidence=AK242846 (DDBJ%2C Best hit);ORF_evidence=O81444 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722),Molecular Function: protein binding (GO:0005515);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Forkhead-associated (FHA) domain (IPR000253),Protein phosphatase 2C-like (IPR001932),SMAD/FHA domain (IPR008984),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J090071I10;Oryzabase=6187;TENOR=Os07t0211400-01;KEGG=Os07t0211400-01
Chr07	irgsp1_rep	five_prime_UTR	6052570	6052694	.	+	.	Parent=Os07t0211400-01
Chr07	irgsp1_rep	CDS	6052695	6052742	.	+	0	Parent=Os07t0211400-01
Chr07	irgsp1_rep	CDS	6053900	6054086	.	+	0	Parent=Os07t0211400-01
Chr07	irgsp1_rep	CDS	6054244	6054417	.	+	2	Parent=Os07t0211400-01
Chr07	irgsp1_rep	CDS	6054520	6054692	.	+	2	Parent=Os07t0211400-01
Chr07	irgsp1_rep	CDS	6055368	6055526	.	+	0	Parent=Os07t0211400-01
Chr07	irgsp1_rep	CDS	6056525	6056665	.	+	0	Parent=Os07t0211400-01
Chr07	irgsp1_rep	CDS	6056728	6056789	.	+	0	Parent=Os07t0211400-01
Chr07	irgsp1_rep	CDS	6056968	6057103	.	+	1	Parent=Os07t0211400-01
Chr07	irgsp1_rep	CDS	6058990	6059084	.	+	0	Parent=Os07t0211400-01
Chr07	irgsp1_rep	CDS	6059181	6059296	.	+	1	Parent=Os07t0211400-01
Chr07	irgsp1_rep	CDS	6059386	6059515	.	+	2	Parent=Os07t0211400-01
Chr07	irgsp1_rep	CDS	6059605	6059659	.	+	1	Parent=Os07t0211400-01
Chr07	irgsp1_rep	CDS	6059737	6059889	.	+	0	Parent=Os07t0211400-01
Chr07	irgsp1_rep	three_prime_UTR	6059890	6060083	.	+	.	Parent=Os07t0211400-01
Chr07	irgsp1_rep	mRNA	6062889	6069317	.	+	.	ID=Os07t0211500-01;Name=Os07t0211500-01;Locus_id=Os07g0211500;RAP-DB Gene Symbol Synonym(s)=Rc;RAP-DB Gene Name Synonym(s)=brown pericarp and seed coat;CGSNL Gene Symbol=RC;CGSNL Gene Name=BROWN PERICARP AND SEED COAT;Oryzabase Gene Symbol Synonym(s)=Rc%2C OsbHLH017%2C OsbHLH17%2C SD7-1%2C qSD7-1/qPC7%2C OsGL3C%2C GL3C;Oryzabase Gene Name Synonym(s)=Brown pericarp and seed coat%2C basic/helix-loop-helix 17%2C basic helix loop helix 17%2C GLABRA3C%2C GLABRA 3C;Note=Basic helix-loop-helix (bHLH) protein%2C Proanthocyanidin synthesis%2C Regulation of proanthocyanidin pigmentation%2C (Nipponbare: loss-of-function mutation of Rc);Transcript_evidence=DQ204736 (Jefferson);ORF_evidence=Inferred from literature;InterPro=Transcription factor MYC/MYB N-terminal (IPR025610);Manual Curation=June 22%2C 2018;Literature_PMID=17163879,16399804;Oryzabase=813;TENOR=Os07t0211500-00;KEGG=Os07t0211500-00
Chr07	irgsp1_rep	CDS	6062889	6062983	.	+	0	Parent=Os07t0211500-01
Chr07	irgsp1_rep	CDS	6063303	6063608	.	+	1	Parent=Os07t0211500-01
Chr07	irgsp1_rep	CDS	6066306	6066402	.	+	1	Parent=Os07t0211500-01
Chr07	irgsp1_rep	CDS	6066791	6066847	.	+	0	Parent=Os07t0211500-01
Chr07	irgsp1_rep	CDS	6067050	6067599	.	+	0	Parent=Os07t0211500-01
Chr07	irgsp1_rep	CDS	6067770	6068086	.	+	2	Parent=Os07t0211500-01
Chr07	irgsp1_rep	three_prime_UTR	6068087	6068183	.	+	.	Parent=Os07t0211500-01
Chr07	irgsp1_rep	three_prime_UTR	6068850	6069317	.	+	.	Parent=Os07t0211500-01
Chr07	irgsp1_rep	mRNA	6088484	6093428	.	-	.	ID=Os07t0211601-01;Name=Os07t0211601-01;Locus_id=Os07g0211601;Note=Hypothetical gene.;Transcript_evidence=AK288862 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090077G22;TENOR=Os07t0211601-01;KEGG=Os07t0211601-01
Chr07	irgsp1_rep	five_prime_UTR	6090429	6093428	.	-	.	Parent=Os07t0211601-01
Chr07	irgsp1_rep	CDS	6089946	6090428	.	-	0	Parent=Os07t0211601-01
Chr07	irgsp1_rep	three_prime_UTR	6088484	6089945	.	-	.	Parent=Os07t0211601-01
Chr07	irgsp1_rep	mRNA	6089992	6091035	.	+	.	ID=Os07t0211700-00;Name=Os07t0211700-00;Locus_id=Os07g0211700;CGSNL Gene Symbol=IPT5;CGSNL Gene Name=ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 5;Oryzabase Gene Symbol Synonym(s)=OsIPT5;Oryzabase Gene Name Synonym(s)=adenosine phosphate isopentenyltransferase 5%2C isopentenyltransferase 5;Note=Similar to isopentenyl transferase IPT4.;Transcript_evidence=AB239801 (DDBJ%2C Best hit);ORF_evidence=NP_001121195.1 (RefSeq);GO=Biological Process: tRNA processing (GO:0008033),Molecular Function: ATP binding (GO:0005524);InterPro=tRNA isopentenyltransferase (IPR002627);Oryzabase=6175;TENOR=Os07t0211700-00;KEGG=Os07t0211700-00
Chr07	irgsp1_rep	CDS	6089992	6091035	.	+	0	Parent=Os07t0211700-00
Chr07	irgsp1_rep	mRNA	6108059	6115481	.	-	.	ID=Os07t0211800-01;Name=Os07t0211800-01;Locus_id=Os07g0211800;Note=Protein of unknown function DUF1749 family protein.;Transcript_evidence=AK065959 (DDBJ%2C Best hit);ORF_evidence=B7EB72 (UniProt);InterPro=Protein of unknown function DUF1749 (IPR013744);NIAS_FLcDNA=J013045P18;Expression=AK065959;TENOR=Os07t0211800-01;KEGG=Os07t0211800-01
Chr07	irgsp1_rep	five_prime_UTR	6115392	6115481	.	-	.	Parent=Os07t0211800-01
Chr07	irgsp1_rep	CDS	6115131	6115391	.	-	0	Parent=Os07t0211800-01
Chr07	irgsp1_rep	CDS	6113380	6113456	.	-	0	Parent=Os07t0211800-01
Chr07	irgsp1_rep	CDS	6112594	6112699	.	-	1	Parent=Os07t0211800-01
Chr07	irgsp1_rep	CDS	6111979	6112071	.	-	0	Parent=Os07t0211800-01
Chr07	irgsp1_rep	CDS	6110826	6110891	.	-	0	Parent=Os07t0211800-01
Chr07	irgsp1_rep	CDS	6110478	6110623	.	-	0	Parent=Os07t0211800-01
Chr07	irgsp1_rep	CDS	6109539	6109647	.	-	1	Parent=Os07t0211800-01
Chr07	irgsp1_rep	CDS	6108592	6108656	.	-	0	Parent=Os07t0211800-01
Chr07	irgsp1_rep	CDS	6108360	6108507	.	-	1	Parent=Os07t0211800-01
Chr07	irgsp1_rep	three_prime_UTR	6108059	6108359	.	-	.	Parent=Os07t0211800-01
Chr07	irgsp1_rep	mRNA	6108138	6114732	.	-	.	ID=Os07t0211800-02;Name=Os07t0211800-02;Locus_id=Os07g0211800;Note=Similar to predicted protein.;Transcript_evidence=AK065682 (DDBJ%2C Best hit);ORF_evidence=B9FW57 (UniProt);InterPro=Protein of unknown function DUF1749 (IPR013744);NIAS_FLcDNA=J013035L06;Expression=AK065682;TENOR=Os07t0211800-02;KEGG=Os07t0211800-02
Chr07	irgsp1_rep	five_prime_UTR	6113505	6114732	.	-	.	Parent=Os07t0211800-02
Chr07	irgsp1_rep	CDS	6113380	6113504	.	-	0	Parent=Os07t0211800-02
Chr07	irgsp1_rep	CDS	6112594	6112699	.	-	1	Parent=Os07t0211800-02
Chr07	irgsp1_rep	CDS	6111979	6112071	.	-	0	Parent=Os07t0211800-02
Chr07	irgsp1_rep	CDS	6110826	6110891	.	-	0	Parent=Os07t0211800-02
Chr07	irgsp1_rep	CDS	6110478	6110623	.	-	0	Parent=Os07t0211800-02
Chr07	irgsp1_rep	CDS	6109539	6109647	.	-	1	Parent=Os07t0211800-02
Chr07	irgsp1_rep	CDS	6108592	6108656	.	-	0	Parent=Os07t0211800-02
Chr07	irgsp1_rep	CDS	6108360	6108507	.	-	1	Parent=Os07t0211800-02
Chr07	irgsp1_rep	three_prime_UTR	6108138	6108359	.	-	.	Parent=Os07t0211800-02
Chr07	irgsp1_rep	mRNA	6117890	6121772	.	-	.	ID=Os07t0211900-01;Name=Os07t0211900-01;Locus_id=Os07g0211900;Note=Protein of unknown function DUF632 domain containing protein.;Transcript_evidence=AK243281 (DDBJ%2C Best hit);ORF_evidence=Q8H4U8 (UniProt);InterPro=Domain of unknown function DUF632 (IPR006867),Domain of unknown function DUF630 (IPR006868);NIAS_FLcDNA=J100051E24;TENOR=Os07t0211900-01;KEGG=Os07t0211900-01
Chr07	irgsp1_rep	five_prime_UTR	6121650	6121772	.	-	.	Parent=Os07t0211900-01
Chr07	irgsp1_rep	CDS	6120626	6121649	.	-	0	Parent=Os07t0211900-01
Chr07	irgsp1_rep	CDS	6119664	6119839	.	-	2	Parent=Os07t0211900-01
Chr07	irgsp1_rep	CDS	6119015	6119238	.	-	0	Parent=Os07t0211900-01
Chr07	irgsp1_rep	CDS	6118105	6118894	.	-	1	Parent=Os07t0211900-01
Chr07	irgsp1_rep	three_prime_UTR	6117890	6118104	.	-	.	Parent=Os07t0211900-01
Chr07	irgsp1_rep	mRNA	6134016	6136740	.	+	.	ID=Os07t0212200-01;Name=Os07t0212200-01;Locus_id=Os07g0212200;Note=Similar to MRNA-binding protein (Fragment).;Transcript_evidence=AK071575 (DDBJ%2C Best hit),AK104057 (DDBJ%2C Best hit);ORF_evidence=Q7X998 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023102O13,001-024-E01;TENOR=Os07t0212200-01
Chr07	irgsp1_rep	five_prime_UTR	6134016	6134077	.	+	.	Parent=Os07t0212200-01
Chr07	irgsp1_rep	CDS	6134078	6134446	.	+	0	Parent=Os07t0212200-01
Chr07	irgsp1_rep	CDS	6134519	6134643	.	+	0	Parent=Os07t0212200-01
Chr07	irgsp1_rep	CDS	6134727	6134829	.	+	1	Parent=Os07t0212200-01
Chr07	irgsp1_rep	CDS	6134937	6135075	.	+	0	Parent=Os07t0212200-01
Chr07	irgsp1_rep	CDS	6135489	6135766	.	+	2	Parent=Os07t0212200-01
Chr07	irgsp1_rep	CDS	6136296	6136460	.	+	0	Parent=Os07t0212200-01
Chr07	irgsp1_rep	three_prime_UTR	6136461	6136740	.	+	.	Parent=Os07t0212200-01
Chr07	irgsp1_rep	mRNA	6137057	6141022	.	-	.	ID=Os07t0212300-01;Name=Os07t0212300-01;Locus_id=Os07g0212300;Note=Similar to Nudix hydrolase 16%2C mitochondrial precursor (EC 3.6.1.-) (AtNUDT16).;Transcript_evidence=AK107375 (DDBJ%2C Best hit);ORF_evidence=B6SQG1 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=NUDIX hydrolase domain (IPR000086),NUDIX hydrolase domain-like (IPR015797),NUDIX hydrolase%2C conserved site (IPR020084);NIAS_FLcDNA=002-127-B08;Expression=AK107375;TENOR=Os07t0212300-01;KEGG=Os07t0212300-01
Chr07	irgsp1_rep	five_prime_UTR	6140836	6141022	.	-	.	Parent=Os07t0212300-01
Chr07	irgsp1_rep	CDS	6140765	6140835	.	-	0	Parent=Os07t0212300-01
Chr07	irgsp1_rep	CDS	6139321	6139438	.	-	1	Parent=Os07t0212300-01
Chr07	irgsp1_rep	CDS	6138790	6138873	.	-	0	Parent=Os07t0212300-01
Chr07	irgsp1_rep	CDS	6137509	6137784	.	-	0	Parent=Os07t0212300-01
Chr07	irgsp1_rep	three_prime_UTR	6137057	6137508	.	-	.	Parent=Os07t0212300-01
Chr07	irgsp1_rep	mRNA	6146970	6152549	.	-	.	ID=Os07t0212400-01;Name=Os07t0212400-01;Locus_id=Os07g0212400;Note=Transposase%2C Ptta/En/Spm%2C plant domain containing protein.;Transcript_evidence=AK119367 (DDBJ%2C Best hit);ORF_evidence=B8AH06 (UniProt);InterPro=Transposase%2C Ptta/En/Spm%2C plant (IPR004252);NIAS_FLcDNA=001-131-H05;Expression=AK119367;TENOR=Os07t0212400-01;KEGG=Os07t0212400-01
Chr07	irgsp1_rep	five_prime_UTR	6151925	6152549	.	-	.	Parent=Os07t0212400-01
Chr07	irgsp1_rep	five_prime_UTR	6151602	6151603	.	-	.	Parent=Os07t0212400-01
Chr07	irgsp1_rep	CDS	6151340	6151601	.	-	0	Parent=Os07t0212400-01
Chr07	irgsp1_rep	CDS	6150965	6151233	.	-	2	Parent=Os07t0212400-01
Chr07	irgsp1_rep	CDS	6150665	6150868	.	-	0	Parent=Os07t0212400-01
Chr07	irgsp1_rep	CDS	6150463	6150555	.	-	0	Parent=Os07t0212400-01
Chr07	irgsp1_rep	CDS	6150274	6150369	.	-	0	Parent=Os07t0212400-01
Chr07	irgsp1_rep	CDS	6149846	6150190	.	-	0	Parent=Os07t0212400-01
Chr07	irgsp1_rep	CDS	6149687	6149755	.	-	0	Parent=Os07t0212400-01
Chr07	irgsp1_rep	CDS	6149511	6149594	.	-	0	Parent=Os07t0212400-01
Chr07	irgsp1_rep	CDS	6149358	6149423	.	-	0	Parent=Os07t0212400-01
Chr07	irgsp1_rep	CDS	6149078	6149143	.	-	0	Parent=Os07t0212400-01
Chr07	irgsp1_rep	CDS	6148879	6148944	.	-	0	Parent=Os07t0212400-01
Chr07	irgsp1_rep	CDS	6148716	6148781	.	-	0	Parent=Os07t0212400-01
Chr07	irgsp1_rep	CDS	6148551	6148598	.	-	0	Parent=Os07t0212400-01
Chr07	irgsp1_rep	CDS	6148410	6148472	.	-	0	Parent=Os07t0212400-01
Chr07	irgsp1_rep	CDS	6148259	6148324	.	-	0	Parent=Os07t0212400-01
Chr07	irgsp1_rep	CDS	6148037	6148096	.	-	0	Parent=Os07t0212400-01
Chr07	irgsp1_rep	CDS	6147862	6147927	.	-	0	Parent=Os07t0212400-01
Chr07	irgsp1_rep	CDS	6147645	6147692	.	-	0	Parent=Os07t0212400-01
Chr07	irgsp1_rep	CDS	6147215	6147235	.	-	0	Parent=Os07t0212400-01
Chr07	irgsp1_rep	three_prime_UTR	6146970	6147214	.	-	.	Parent=Os07t0212400-01
Chr07	irgsp1_rep	mRNA	6222175	6231669	.	-	.	ID=Os07t0213300-01;Name=Os07t0213300-01;Locus_id=Os07g0213300;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK120512 (DDBJ%2C Best hit);ORF_evidence=B9FW61 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013123O09;Expression=AK120512;TENOR=Os07t0213300-01;KEGG=Os07t0213300-01
Chr07	irgsp1_rep	five_prime_UTR	6230842	6231669	.	-	.	Parent=Os07t0213300-01
Chr07	irgsp1_rep	CDS	6230720	6230841	.	-	0	Parent=Os07t0213300-01
Chr07	irgsp1_rep	CDS	6230176	6230281	.	-	1	Parent=Os07t0213300-01
Chr07	irgsp1_rep	CDS	6228380	6229490	.	-	0	Parent=Os07t0213300-01
Chr07	irgsp1_rep	CDS	6228203	6228307	.	-	2	Parent=Os07t0213300-01
Chr07	irgsp1_rep	CDS	6227916	6228120	.	-	2	Parent=Os07t0213300-01
Chr07	irgsp1_rep	CDS	6227044	6227176	.	-	1	Parent=Os07t0213300-01
Chr07	irgsp1_rep	CDS	6226124	6226228	.	-	0	Parent=Os07t0213300-01
Chr07	irgsp1_rep	CDS	6225877	6225997	.	-	0	Parent=Os07t0213300-01
Chr07	irgsp1_rep	CDS	6225216	6225241	.	-	2	Parent=Os07t0213300-01
Chr07	irgsp1_rep	three_prime_UTR	6225088	6225215	.	-	.	Parent=Os07t0213300-01
Chr07	irgsp1_rep	three_prime_UTR	6222175	6223008	.	-	.	Parent=Os07t0213300-01
Chr07	irgsp1_rep	mRNA	6224889	6227944	.	-	.	ID=Os07t0213300-02;Name=Os07t0213300-02;Locus_id=Os07g0213300;Note=Similar to cDNA clone:J013123O09%2C full insert sequence.;Transcript_evidence=AK058616 (DDBJ%2C Best hit);ORF_evidence=B9FW61 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=001-018-B03;Expression=AK058616;TENOR=Os07t0213300-02;KEGG=Os07t0213300-02
Chr07	irgsp1_rep	CDS	6227916	6227944	.	-	0	Parent=Os07t0213300-02
Chr07	irgsp1_rep	CDS	6227044	6227176	.	-	1	Parent=Os07t0213300-02
Chr07	irgsp1_rep	CDS	6226124	6226228	.	-	0	Parent=Os07t0213300-02
Chr07	irgsp1_rep	CDS	6225877	6225997	.	-	0	Parent=Os07t0213300-02
Chr07	irgsp1_rep	CDS	6225216	6225241	.	-	2	Parent=Os07t0213300-02
Chr07	irgsp1_rep	three_prime_UTR	6224889	6225215	.	-	.	Parent=Os07t0213300-02
Chr07	irgsp1_rep	mRNA	6225877	6231558	.	+	.	ID=Os07t0213350-00;Name=Os07t0213350-00;Locus_id=Os07g0213350;Note=Non-protein coding transcript.;Transcript_evidence=tplb0045i19 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os07t0213350-00
Chr07	irgsp1_rep	exon	6225877	6226000	.	+	.	Parent=Os07t0213350-00
Chr07	irgsp1_rep	exon	6226117	6226219	.	+	.	Parent=Os07t0213350-00
Chr07	irgsp1_rep	exon	6227033	6227166	.	+	.	Parent=Os07t0213350-00
Chr07	irgsp1_rep	exon	6227907	6228148	.	+	.	Parent=Os07t0213350-00
Chr07	irgsp1_rep	exon	6228233	6228301	.	+	.	Parent=Os07t0213350-00
Chr07	irgsp1_rep	exon	6228371	6229479	.	+	.	Parent=Os07t0213350-00
Chr07	irgsp1_rep	exon	6230163	6230279	.	+	.	Parent=Os07t0213350-00
Chr07	irgsp1_rep	exon	6230718	6230898	.	+	.	Parent=Os07t0213350-00
Chr07	irgsp1_rep	exon	6231209	6231558	.	+	.	Parent=Os07t0213350-00
Chr07	irgsp1_rep	mRNA	6232648	6234546	.	+	.	ID=Os07t0213400-01;Name=Os07t0213400-01;Locus_id=Os07g0213400;Note=Conserved hypothetical protein.;Transcript_evidence=AK062273 (DDBJ%2C Best hit);ORF_evidence=B9FW62 (UniProt);NIAS_FLcDNA=001-100-A12;Expression=AK062273;TENOR=Os07t0213400-01;KEGG=Os07t0213400-01
Chr07	irgsp1_rep	five_prime_UTR	6232648	6232741	.	+	.	Parent=Os07t0213400-01
Chr07	irgsp1_rep	five_prime_UTR	6232864	6232953	.	+	.	Parent=Os07t0213400-01
Chr07	irgsp1_rep	CDS	6232954	6233152	.	+	0	Parent=Os07t0213400-01
Chr07	irgsp1_rep	CDS	6233571	6233811	.	+	2	Parent=Os07t0213400-01
Chr07	irgsp1_rep	CDS	6233911	6234271	.	+	1	Parent=Os07t0213400-01
Chr07	irgsp1_rep	three_prime_UTR	6234272	6234546	.	+	.	Parent=Os07t0213400-01
Chr07	irgsp1_rep	mRNA	6234898	6236824	.	-	.	ID=Os07t0213500-01;Name=Os07t0213500-01;Locus_id=Os07g0213500;Note=Hypothetical conserved gene.;Transcript_evidence=AK070126 (DDBJ%2C Best hit);ORF_evidence=B6SL19 (UniProt);NIAS_FLcDNA=J023047L06;Expression=AK070126;TENOR=Os07t0213500-01;KEGG=Os07t0213500-01
Chr07	irgsp1_rep	five_prime_UTR	6236593	6236824	.	-	.	Parent=Os07t0213500-01
Chr07	irgsp1_rep	five_prime_UTR	6236339	6236424	.	-	.	Parent=Os07t0213500-01
Chr07	irgsp1_rep	CDS	6236192	6236338	.	-	0	Parent=Os07t0213500-01
Chr07	irgsp1_rep	three_prime_UTR	6236154	6236191	.	-	.	Parent=Os07t0213500-01
Chr07	irgsp1_rep	three_prime_UTR	6234898	6235184	.	-	.	Parent=Os07t0213500-01
Chr07	irgsp1_rep	mRNA	6239015	6239615	.	-	.	ID=Os07t0213600-01;Name=Os07t0213600-01;Locus_id=Os07g0213600;Oryzabase Gene Symbol Synonym(s)=OsEnS-95;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 95;Note=Bifunctional inhibitor/plant lipid transfer protein/seed storage domain containing protein.;Transcript_evidence=AK107696 (DDBJ%2C Best hit);ORF_evidence=A2YJF5 (UniProt);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Bifunctional trypsin/alpha-amylase inhibitor (IPR013771),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=002-132-C06;Oryzabase=18402;Expression=AK107696;TENOR=Os07t0213600-01;KEGG=Os07t0213600-01
Chr07	irgsp1_rep	five_prime_UTR	6239574	6239615	.	-	.	Parent=Os07t0213600-01
Chr07	irgsp1_rep	CDS	6239109	6239573	.	-	0	Parent=Os07t0213600-01
Chr07	irgsp1_rep	three_prime_UTR	6239015	6239108	.	-	.	Parent=Os07t0213600-01
Chr07	irgsp1_rep	mRNA	6244163	6244880	.	-	.	ID=Os07t0213800-01;Name=Os07t0213800-01;Locus_id=Os07g0213800;Oryzabase Gene Symbol Synonym(s)=OsEnS-96;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 96;Note=Similar to Allergenic protein.;Transcript_evidence=AK107215 (DDBJ%2C Best hit);ORF_evidence=Q01882 (UniProt);GO=Biological Process: type I hypersensitivity (GO:0016068),Cellular Component: extracellular space (GO:0005615),Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Cereal allergen/alpha-amylase inhibitor%2C rice-type (IPR002411),Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Cereal seed allergen/trypsin and alpha-amylase inhibitor%2C conserved site (IPR006105),Cereal seed allergen/grain softness/trypsin and alpha-amylase inhibitor (IPR006106),Bifunctional trypsin/alpha-amylase inhibitor (IPR013771),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140),Alpha-amylase inhibitor/seed allergen (IPR016309);NIAS_FLcDNA=002-125-C09;Oryzabase=18403;Expression=AK107215;TENOR=Os07t0213800-01;KEGG=Os07t0213800-01
Chr07	irgsp1_rep	five_prime_UTR	6244754	6244880	.	-	.	Parent=Os07t0213800-01
Chr07	irgsp1_rep	CDS	6244271	6244753	.	-	0	Parent=Os07t0213800-01
Chr07	irgsp1_rep	three_prime_UTR	6244163	6244270	.	-	.	Parent=Os07t0213800-01
Chr07	irgsp1_rep	mRNA	6254882	6255558	.	-	.	ID=Os07t0214100-01;Name=Os07t0214100-01;Locus_id=Os07g0214100;Oryzabase Gene Symbol Synonym(s)=RA17%2C RAP%2C RAG1%2C OsEnS-97;Oryzabase Gene Name Synonym(s)=16-kDa rice allergen%2C 16 kDa albumin%2C endosperm-specific gene 97;Note=Seed allergenic protein RA17 precursor.;Transcript_evidence=AK242324 (DDBJ%2C Best hit);ORF_evidence=Q01883 (UniProt);GO=Biological Process: type I hypersensitivity (GO:0016068),Cellular Component: extracellular space (GO:0005615),Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Cereal allergen/alpha-amylase inhibitor%2C rice-type (IPR002411),Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Cereal seed allergen/trypsin and alpha-amylase inhibitor%2C conserved site (IPR006105),Cereal seed allergen/grain softness/trypsin and alpha-amylase inhibitor (IPR006106),Bifunctional trypsin/alpha-amylase inhibitor (IPR013771),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140),Alpha-amylase inhibitor/seed allergen (IPR016309);NIAS_FLcDNA=J075197J12;Oryzabase=9288;TENOR=Os07t0214100-01;KEGG=Os07t0214100-01
Chr07	irgsp1_rep	five_prime_UTR	6255520	6255558	.	-	.	Parent=Os07t0214100-01
Chr07	irgsp1_rep	CDS	6255028	6255519	.	-	0	Parent=Os07t0214100-01
Chr07	irgsp1_rep	three_prime_UTR	6254882	6255027	.	-	.	Parent=Os07t0214100-01
Chr07	irgsp1_rep	mRNA	6258917	6259662	.	-	.	ID=Os07t0214300-01;Name=Os07t0214300-01;Locus_id=Os07g0214300;RAP-DB Gene Symbol Synonym(s)=RAG2;Oryzabase Gene Symbol Synonym(s)=RAG2%2C RA14B%2C RA14%2C OsEnS-98;Oryzabase Gene Name Synonym(s)=rice allergen 14B%2C endosperm-specific gene 98;Note=16-kDa alpha-amylase/trypsin inhibitor%2C Seed storage protein%2C Allergen protein%2C Regulation of grain weight and seed quality;Transcript_evidence=AK107328;ORF_evidence=Q01882;GO=Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily (IPR036312),Cereal seed allergen/grain softness/trypsin and alpha-amylase inhibitor (IPR006106),Cereal allergen/alpha-amylase inhibitor%2C rice-type (IPR002411),Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain (IPR016140),Cereal seed allergen/trypsin and alpha-amylase inhibitor%2C conserved site (IPR006105);NIAS_FLcDNA=002-126-F01;Manual Curation=May 15%2C 2020;Literature_PMID=27775871,24085308;Oryzabase=14472;Expression=AK107328;TENOR=Os07t0214300-01;KEGG=Os07t0214300-01;Subcellular location=protein body (GO:0042735) [protein body II (PB-II)]
Chr07	irgsp1_rep	five_prime_UTR	6259614	6259662	.	-	.	Parent=Os07t0214300-01
Chr07	irgsp1_rep	CDS	6259113	6259613	.	-	0	Parent=Os07t0214300-01
Chr07	irgsp1_rep	three_prime_UTR	6258917	6259112	.	-	.	Parent=Os07t0214300-01
Chr07	irgsp1_rep	mRNA	6276107	6276753	.	-	.	ID=Os07t0214600-01;Name=Os07t0214600-01;Locus_id=Os07g0214600;Oryzabase Gene Symbol Synonym(s)=RA5B%2C OsEnS-99;Oryzabase Gene Name Synonym(s)=rice allergen 5B%2C endosperm-specific gene 99;Note=Similar to Seed allergenic protein RA17 precursor.;Transcript_evidence=AK242298 (DDBJ%2C Best hit);ORF_evidence=Q40654 (UniProt);GO=Biological Process: type I hypersensitivity (GO:0016068),Cellular Component: extracellular space (GO:0005615),Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Cereal allergen/alpha-amylase inhibitor%2C rice-type (IPR002411),Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Cereal seed allergen/trypsin and alpha-amylase inhibitor%2C conserved site (IPR006105),Cereal seed allergen/grain softness/trypsin and alpha-amylase inhibitor (IPR006106),Bifunctional trypsin/alpha-amylase inhibitor (IPR013771),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140),Alpha-amylase inhibitor/seed allergen (IPR016309);NIAS_FLcDNA=J075192H18;Oryzabase=15682;TENOR=Os07t0214600-01;KEGG=Os07t0214600-01
Chr07	irgsp1_rep	five_prime_UTR	6276705	6276753	.	-	.	Parent=Os07t0214600-01
Chr07	irgsp1_rep	CDS	6276231	6276704	.	-	0	Parent=Os07t0214600-01
Chr07	irgsp1_rep	three_prime_UTR	6276107	6276230	.	-	.	Parent=Os07t0214600-01
Chr07	irgsp1_rep	mRNA	6294479	6296305	.	-	.	ID=Os07t0214900-01;Name=Os07t0214900-01;Locus_id=Os07g0214900;RAP-DB Gene Symbol Synonym(s)=OsCHS2%2C OsCHS8;RAP-DB Gene Name Synonym(s)=chalcone synthase 2%2C chalcone synthase 8;Oryzabase Gene Symbol Synonym(s)=OsCHS2%2C CHS2%2C OsPKS08%2C OsPKS8%2C PKS08%2C PKS8%2C OsCHS8%2C CHS8;Oryzabase Gene Name Synonym(s)=chalcone synthase 2%2C polyketide synthase 8%2C Chalcone synthase 8;Note=Chalcone synthase%2C Sakuranetin biosynthesis under UV stress conditions;Transcript_evidence=FP093770 (Bamboo);ORF_evidence=Q8H4L3;GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Thiolase-like (IPR016039),Polyketide synthase%2C type III (IPR011141),Chalcone/stilbene synthase%2C N-terminal (IPR001099),Chalcone/stilbene synthase%2C C-terminal (IPR012328),Chalcone/stilbene synthase%2C active site (IPR018088);Manual Curation=June 1%2C 2020;Literature_PMID=32471084,18726614;Oryzabase=20382;TENOR=Os07t0214900-00
Chr07	irgsp1_rep	CDS	6296116	6296305	.	-	0	Parent=Os07t0214900-01
Chr07	irgsp1_rep	CDS	6294613	6295634	.	-	2	Parent=Os07t0214900-01
Chr07	irgsp1_rep	three_prime_UTR	6294479	6294612	.	-	.	Parent=Os07t0214900-01
Chr07	irgsp1_rep	mRNA	6294761	6295698	.	+	.	ID=Os07t0215050-00;Name=Os07t0215050-00;Locus_id=Os07g0215050;Note=Hypothetical protein.;Transcript_evidence=BT063109 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0215050-00
Chr07	irgsp1_rep	five_prime_UTR	6294761	6294762	.	+	.	Parent=Os07t0215050-00
Chr07	irgsp1_rep	CDS	6294763	6295365	.	+	0	Parent=Os07t0215050-00
Chr07	irgsp1_rep	three_prime_UTR	6295366	6295698	.	+	.	Parent=Os07t0215050-00
Chr07	irgsp1_rep	mRNA	6315737	6318057	.	-	.	ID=Os07t0215200-01;Name=Os07t0215200-01;Locus_id=Os07g0215200;Note=Conserved hypothetical protein.;Transcript_evidence=AK071649 (DDBJ%2C Best hit);ORF_evidence=B9FW67 (UniProt);NIAS_FLcDNA=J023107C10;TENOR=Os07t0215200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	6317480	6318057	.	-	.	Parent=Os07t0215200-01
Chr07	irgsp1_rep	CDS	6317244	6317479	.	-	0	Parent=Os07t0215200-01
Chr07	irgsp1_rep	CDS	6316802	6316957	.	-	1	Parent=Os07t0215200-01
Chr07	irgsp1_rep	CDS	6316498	6316596	.	-	1	Parent=Os07t0215200-01
Chr07	irgsp1_rep	CDS	6316306	6316417	.	-	1	Parent=Os07t0215200-01
Chr07	irgsp1_rep	CDS	6316153	6316161	.	-	0	Parent=Os07t0215200-01
Chr07	irgsp1_rep	three_prime_UTR	6316061	6316152	.	-	.	Parent=Os07t0215200-01
Chr07	irgsp1_rep	three_prime_UTR	6315737	6315975	.	-	.	Parent=Os07t0215200-01
Chr07	irgsp1_rep	mRNA	6336198	6336838	.	-	.	ID=Os07t0215500-01;Name=Os07t0215500-01;Locus_id=Os07g0215500;Oryzabase Gene Symbol Synonym(s)=RA16%2C OsEnS-100;Oryzabase Gene Name Synonym(s)=rice allergen 16%2C endosperm-specific gene 100;Note=Allergenic protein.;Transcript_evidence=AK242333 (DDBJ%2C Best hit);ORF_evidence=Q01881 (UniProt);GO=Biological Process: type I hypersensitivity (GO:0016068),Cellular Component: extracellular space (GO:0005615),Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Cereal allergen/alpha-amylase inhibitor%2C rice-type (IPR002411),Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Cereal seed allergen/trypsin and alpha-amylase inhibitor%2C conserved site (IPR006105),Cereal seed allergen/grain softness/trypsin and alpha-amylase inhibitor (IPR006106),Bifunctional trypsin/alpha-amylase inhibitor (IPR013771),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140),Alpha-amylase inhibitor/seed allergen (IPR016309);NIAS_FLcDNA=J075198N21;Oryzabase=15684;TENOR=Os07t0215500-01;KEGG=Os07t0215500-01
Chr07	irgsp1_rep	five_prime_UTR	6336800	6336838	.	-	.	Parent=Os07t0215500-01
Chr07	irgsp1_rep	CDS	6336317	6336799	.	-	0	Parent=Os07t0215500-01
Chr07	irgsp1_rep	three_prime_UTR	6336198	6336316	.	-	.	Parent=Os07t0215500-01
Chr07	irgsp1_rep	mRNA	6376133	6376887	.	-	.	ID=Os07t0216100-01;Name=Os07t0216100-01;Locus_id=Os07g0216100;Note=Hypothetical gene.;Transcript_evidence=AK107820 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-133-F12;Expression=AK107820;TENOR=Os07t0216100-01;KEGG=Os07t0216100-01
Chr07	irgsp1_rep	CDS	6376408	6376887	.	-	0	Parent=Os07t0216100-01
Chr07	irgsp1_rep	three_prime_UTR	6376133	6376407	.	-	.	Parent=Os07t0216100-01
Chr07	irgsp1_rep	mRNA	6416024	6416707	.	-	.	ID=Os07t0216600-01;Name=Os07t0216600-01;Locus_id=Os07g0216600;Oryzabase Gene Symbol Synonym(s)=LTPL163;Oryzabase Gene Name Synonym(s)=protease inhibitor/seed storage/LTP family protein 163;Note=Bifunctional trypsin/alpha-amylase inhibitor domain containing protein.;Transcript_evidence=AK107674 (DDBJ%2C Best hit);ORF_evidence=B8B8F6 (UniProt);GO=Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Cereal seed allergen/grain softness/trypsin and alpha-amylase inhibitor (IPR006106),Bifunctional trypsin/alpha-amylase inhibitor (IPR013771),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=002-131-H12;Oryzabase=22094;Expression=AK107674;TENOR=Os07t0216600-01;KEGG=Os07t0216600-01
Chr07	irgsp1_rep	five_prime_UTR	6416678	6416707	.	-	.	Parent=Os07t0216600-01
Chr07	irgsp1_rep	CDS	6416201	6416677	.	-	0	Parent=Os07t0216600-01
Chr07	irgsp1_rep	three_prime_UTR	6416024	6416200	.	-	.	Parent=Os07t0216600-01
Chr07	irgsp1_rep	mRNA	6432377	6433104	.	-	.	ID=Os07t0216700-01;Name=Os07t0216700-01;Locus_id=Os07g0216700;Note=Bifunctional trypsin/alpha-amylase inhibitor domain containing protein.;Transcript_evidence=AK107633 (DDBJ%2C Best hit);ORF_evidence=A2YJG7 (UniProt);GO=Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Cereal seed allergen/grain softness/trypsin and alpha-amylase inhibitor (IPR006106),Bifunctional trypsin/alpha-amylase inhibitor (IPR013771),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=002-131-E06;Expression=AK107633;TENOR=Os07t0216700-01;KEGG=Os07t0216700-01
Chr07	irgsp1_rep	five_prime_UTR	6433053	6433104	.	-	.	Parent=Os07t0216700-01
Chr07	irgsp1_rep	CDS	6432573	6433052	.	-	0	Parent=Os07t0216700-01
Chr07	irgsp1_rep	three_prime_UTR	6432377	6432572	.	-	.	Parent=Os07t0216700-01
Chr07	irgsp1_rep	mRNA	6494465	6501972	.	+	.	ID=Os07t0217600-01;Name=Os07t0217600-01;Locus_id=Os07g0217600;RAP-DB Gene Symbol Synonym(s)=CYP71Z2%2C Oscyp71Z2;RAP-DB Gene Name Synonym(s)=P-450 71Z2%2C CytoChrome P450 71Z2;CGSNL Gene Symbol=CYP71Z2;CGSNL Gene Name=P-450 71Z2;Oryzabase Gene Symbol Synonym(s)=Oscyp71Z2;Oryzabase Gene Name Synonym(s)=CytoChrome P450 71Z2;Note=CytoChromeP450 monooxygenase%2C Diterpenoid phytoalexin biosynthesis%2C Bacterial blight resistance;Transcript_evidence=AK065971;ORF_evidence=Q7X6T8;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J013050H07;Manual Curation=February 9%2C 2017;Literature_PMID=23602104;Oryzabase=12343;Expression=AK065971;TENOR=Os07t0217600-01;KEGG=Os07t0217600-01 (EC:1.14.14.1)
Chr07	irgsp1_rep	five_prime_UTR	6494465	6494481	.	+	.	Parent=Os07t0217600-01
Chr07	irgsp1_rep	CDS	6494482	6495411	.	+	0	Parent=Os07t0217600-01
Chr07	irgsp1_rep	CDS	6501109	6501732	.	+	0	Parent=Os07t0217600-01
Chr07	irgsp1_rep	three_prime_UTR	6501733	6501972	.	+	.	Parent=Os07t0217600-01
Chr07	irgsp1_rep	mRNA	6502506	6503819	.	+	.	ID=Os07t0217800-01;Name=Os07t0217800-01;Locus_id=Os07g0217800;Note=Conserved hypothetical protein.;Transcript_evidence=AK108654 (DDBJ%2C Best hit);ORF_evidence=B9FW71 (UniProt);NIAS_FLcDNA=002-148-D04;TENOR=Os07t0217800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	6502506	6502506	.	+	.	Parent=Os07t0217800-01
Chr07	irgsp1_rep	CDS	6502507	6502641	.	+	0	Parent=Os07t0217800-01
Chr07	irgsp1_rep	three_prime_UTR	6502642	6503819	.	+	.	Parent=Os07t0217800-01
Chr07	irgsp1_rep	mRNA	6516015	6522044	.	-	.	ID=Os07t0218200-00;Name=Os07t0218200-00;Locus_id=Os07g0218200;Oryzabase Gene Symbol Synonym(s)=TPS3%2C OsSTP3%2C OsTPS28%2C TPS28%2C OsTPS13;Oryzabase Gene Name Synonym(s)=TERPENE SYNTHASE3%2C terpene synthase 3%2C terpene synthase 28;Note=Similar to terpene synthase 7.;Transcript_evidence=DQ872159 (DDBJ%2C Best hit);ORF_evidence=Q5GJ59 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: lyase activity (GO:0016829);InterPro=Terpene synthase-like (IPR001906),Terpene synthase%2C metal-binding domain (IPR005630),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930),Terpenoid synthase (IPR008949);Oryzabase=15202;TENOR=Os07t0218200-00;KEGG=Os07t0218200-00
Chr07	irgsp1_rep	CDS	6521976	6522044	.	-	0	Parent=Os07t0218200-00
Chr07	irgsp1_rep	CDS	6519638	6519899	.	-	0	Parent=Os07t0218200-00
Chr07	irgsp1_rep	CDS	6518996	6519374	.	-	2	Parent=Os07t0218200-00
Chr07	irgsp1_rep	CDS	6518676	6518894	.	-	1	Parent=Os07t0218200-00
Chr07	irgsp1_rep	CDS	6518413	6518548	.	-	1	Parent=Os07t0218200-00
Chr07	irgsp1_rep	CDS	6517867	6518115	.	-	0	Parent=Os07t0218200-00
Chr07	irgsp1_rep	CDS	6516015	6516323	.	-	0	Parent=Os07t0218200-00
Chr07	irgsp1_rep	mRNA	6571285	6573172	.	-	.	ID=Os07t0218600-01;Name=Os07t0218600-01;Locus_id=Os07g0218600;Note=Hypothetical conserved gene.;Transcript_evidence=AK072811 (DDBJ%2C Best hit);ORF_evidence=Q53P37 (UniProt);NIAS_FLcDNA=J023143E03;Expression=AK072811;TENOR=Os07t0218600-01;KEGG=Os07t0218600-01
Chr07	irgsp1_rep	five_prime_UTR	6571669	6573172	.	-	.	Parent=Os07t0218600-01
Chr07	irgsp1_rep	CDS	6571531	6571668	.	-	0	Parent=Os07t0218600-01
Chr07	irgsp1_rep	three_prime_UTR	6571285	6571530	.	-	.	Parent=Os07t0218600-01
Chr07	irgsp1_rep	mRNA	6574224	6577179	.	+	.	ID=Os07t0218700-01;Name=Os07t0218700-01;Locus_id=Os07g0218700;Note=CytoChrome P450 family protein.;Transcript_evidence=AK108382 (DDBJ%2C Best hit);ORF_evidence=Q01LP1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=002-142-E08;Expression=AK108382;TENOR=Os07t0218700-01;KEGG=Os07t0218700-01
Chr07	irgsp1_rep	five_prime_UTR	6574224	6574281	.	+	.	Parent=Os07t0218700-01
Chr07	irgsp1_rep	CDS	6574282	6575217	.	+	0	Parent=Os07t0218700-01
Chr07	irgsp1_rep	CDS	6576387	6577010	.	+	0	Parent=Os07t0218700-01
Chr07	irgsp1_rep	three_prime_UTR	6577011	6577179	.	+	.	Parent=Os07t0218700-01
Chr07	irgsp1_rep	mRNA	6574371	6576987	.	-	.	ID=Os07t0218766-00;Name=Os07t0218766-00;Locus_id=Os07g0218766;Note=Hypothetical protein.;Transcript_evidence=tplb0041k22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0218766-00
Chr07	irgsp1_rep	five_prime_UTR	6576413	6576987	.	-	.	Parent=Os07t0218766-00
Chr07	irgsp1_rep	five_prime_UTR	6575055	6575236	.	-	.	Parent=Os07t0218766-00
Chr07	irgsp1_rep	CDS	6574371	6575054	.	-	0	Parent=Os07t0218766-00
Chr07	irgsp1_rep	mRNA	6599749	6602659	.	-	.	ID=Os07t0218832-00;Name=Os07t0218832-00;Locus_id=Os07g0218832;Note=Hypothetical protein.;Transcript_evidence=tplb0024g24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0218832-00
Chr07	irgsp1_rep	five_prime_UTR	6602090	6602659	.	-	.	Parent=Os07t0218832-00
Chr07	irgsp1_rep	five_prime_UTR	6600368	6600515	.	-	.	Parent=Os07t0218832-00
Chr07	irgsp1_rep	CDS	6599749	6600367	.	-	0	Parent=Os07t0218832-00
Chr07	irgsp1_rep	mRNA	6609124	6609750	.	-	.	ID=Os07t0219250-00;Name=Os07t0219250-00;Locus_id=Os07g0219250;Oryzabase Gene Symbol Synonym(s)=Prol-20%2C pro13b.1%2C PROLM19;Oryzabase Gene Name Synonym(s)=Prolamin 19;Note=Similar to cDNA%2C clone: J090058L24%2C full insert sequence.;Transcript_evidence=AK242306 (DDBJ%2C Secondary hit);ORF_evidence=B7F9P8 (UniProt);InterPro=Bifunctional trypsin/alpha-amylase inhibitor (IPR013771);Oryzabase=15152;TENOR=Os07t0219250-00;KEGG=Os07t0219250-00
Chr07	irgsp1_rep	five_prime_UTR	6609690	6609750	.	-	.	Parent=Os07t0219250-00
Chr07	irgsp1_rep	CDS	6609234	6609689	.	-	0	Parent=Os07t0219250-00
Chr07	irgsp1_rep	three_prime_UTR	6609124	6609233	.	-	.	Parent=Os07t0219250-00
Chr07	irgsp1_rep	mRNA	6611130	6611756	.	-	.	ID=Os07t0219300-01;Name=Os07t0219300-01;Locus_id=Os07g0219300;Oryzabase Gene Symbol Synonym(s)=Prol-21%2C pro13b.2%2C PROLM20;Oryzabase Gene Name Synonym(s)=13-kD prolamin%2C Prolamin 20;Note=Prolamin precursor (13 kDa prolamin).;Transcript_evidence=AK242799 (DDBJ%2C Best hit);ORF_evidence=Q42465 (UniProt);InterPro=Bifunctional trypsin/alpha-amylase inhibitor (IPR013771);NIAS_FLcDNA=J090058L24;Oryzabase=13716;TENOR=Os07t0219300-01;KEGG=Os07t0219300-01
Chr07	irgsp1_rep	five_prime_UTR	6611696	6611756	.	-	.	Parent=Os07t0219300-01
Chr07	irgsp1_rep	CDS	6611240	6611695	.	-	0	Parent=Os07t0219300-01
Chr07	irgsp1_rep	three_prime_UTR	6611130	6611239	.	-	.	Parent=Os07t0219300-01
Chr07	irgsp1_rep	mRNA	6613136	6613762	.	-	.	ID=Os07t0219400-01;Name=Os07t0219400-01;Locus_id=Os07g0219400;Oryzabase Gene Symbol Synonym(s)=Prol-22%2C pro13b.3%2C PROLM22;Oryzabase Gene Name Synonym(s)=prolamin 22;Note=Prolamin precursor.;Transcript_evidence=AK242306 (DDBJ%2C Best hit);ORF_evidence=Q43602 (UniProt);InterPro=Bifunctional trypsin/alpha-amylase inhibitor (IPR013771);NIAS_FLcDNA=J075193O21;Oryzabase=13731;TENOR=Os07t0219400-01;KEGG=Os07t0219400-01
Chr07	irgsp1_rep	five_prime_UTR	6613702	6613762	.	-	.	Parent=Os07t0219400-01
Chr07	irgsp1_rep	CDS	6613246	6613701	.	-	0	Parent=Os07t0219400-01
Chr07	irgsp1_rep	three_prime_UTR	6613136	6613245	.	-	.	Parent=Os07t0219400-01
Chr07	irgsp1_rep	mRNA	6620316	6620931	.	-	.	ID=Os07t0220000-01;Name=Os07t0220000-01;Locus_id=Os07g0220000;Oryzabase Gene Symbol Synonym(s)=pro13b.4;Note=Similar to Prolamin.;Transcript_evidence=AK242164 (DDBJ%2C Best hit);ORF_evidence=Q43602 (UniProt);InterPro=Bifunctional trypsin/alpha-amylase inhibitor (IPR013771);NIAS_FLcDNA=J075156I22;Oryzabase=19807;TENOR=Os07t0220000-01;KEGG=Os07t0220000-01
Chr07	irgsp1_rep	five_prime_UTR	6620871	6620931	.	-	.	Parent=Os07t0220000-01
Chr07	irgsp1_rep	CDS	6620415	6620870	.	-	0	Parent=Os07t0220000-01
Chr07	irgsp1_rep	three_prime_UTR	6620316	6620414	.	-	.	Parent=Os07t0220000-01
Chr07	irgsp1_rep	mRNA	6632645	6635326	.	+	.	ID=Os07t0220333-00;Name=Os07t0220333-00;Locus_id=Os07g0220333;Note=Hypothetical protein.;Transcript_evidence=tplb0024g24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0220333-00
Chr07	irgsp1_rep	five_prime_UTR	6632645	6633201	.	+	.	Parent=Os07t0220333-00
Chr07	irgsp1_rep	five_prime_UTR	6634489	6634633	.	+	.	Parent=Os07t0220333-00
Chr07	irgsp1_rep	CDS	6634634	6635326	.	+	0	Parent=Os07t0220333-00
Chr07	irgsp1_rep	mRNA	6650301	6650982	.	-	.	ID=Os07t0220466-00;Name=Os07t0220466-00;Locus_id=Os07g0220466;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);InterPro=Ribonuclease H1%2C N-terminal (IPR011320);TENOR=Os07t0220466-00
Chr07	irgsp1_rep	five_prime_UTR	6650979	6650982	.	-	.	Parent=Os07t0220466-00
Chr07	irgsp1_rep	CDS	6650301	6650978	.	-	0	Parent=Os07t0220466-00
Chr07	irgsp1_rep	mRNA	6661040	6663408	.	+	.	ID=Os07t0220600-01;Name=Os07t0220600-01;Locus_id=Os07g0220600;Note=Hypothetical conserved gene.;Transcript_evidence=AK102969 (DDBJ%2C Best hit);ORF_evidence=B9FW75 (UniProt);NIAS_FLcDNA=J033115J21;Expression=AK102969;TENOR=Os07t0220600-01;KEGG=Os07t0220600-01
Chr07	irgsp1_rep	five_prime_UTR	6661040	6661442	.	+	.	Parent=Os07t0220600-01
Chr07	irgsp1_rep	five_prime_UTR	6661587	6662998	.	+	.	Parent=Os07t0220600-01
Chr07	irgsp1_rep	CDS	6662999	6663032	.	+	0	Parent=Os07t0220600-01
Chr07	irgsp1_rep	CDS	6663121	6663260	.	+	2	Parent=Os07t0220600-01
Chr07	irgsp1_rep	three_prime_UTR	6663261	6663408	.	+	.	Parent=Os07t0220600-01
Chr07	irgsp1_rep	mRNA	6661048	6663308	.	+	.	ID=Os07t0220600-02;Name=Os07t0220600-02;Locus_id=Os07g0220600;Note=Hypothetical conserved gene.;Transcript_evidence=AK107466 (DDBJ%2C Best hit);ORF_evidence=B9FW75 (UniProt);NIAS_FLcDNA=002-129-A11;Expression=AK107466;TENOR=Os07t0220600-02;KEGG=Os07t0220600-02
Chr07	irgsp1_rep	five_prime_UTR	6661048	6661442	.	+	.	Parent=Os07t0220600-02
Chr07	irgsp1_rep	five_prime_UTR	6661587	6661708	.	+	.	Parent=Os07t0220600-02
Chr07	irgsp1_rep	five_prime_UTR	6661897	6662998	.	+	.	Parent=Os07t0220600-02
Chr07	irgsp1_rep	CDS	6662999	6663032	.	+	0	Parent=Os07t0220600-02
Chr07	irgsp1_rep	CDS	6663121	6663260	.	+	2	Parent=Os07t0220600-02
Chr07	irgsp1_rep	three_prime_UTR	6663261	6663308	.	+	.	Parent=Os07t0220600-02
Chr07	irgsp1_rep	mRNA	6695014	6698622	.	-	.	ID=Os07t0221300-01;Name=Os07t0221300-01;Locus_id=Os07g0221300;Note=Hypothetical conserved gene.;Transcript_evidence=AK242308 (DDBJ%2C Best hit);ORF_evidence=B9FW77 (UniProt);NIAS_FLcDNA=J075194B15;TENOR=Os07t0221300-01;KEGG=Os07t0221300-01
Chr07	irgsp1_rep	five_prime_UTR	6698384	6698622	.	-	.	Parent=Os07t0221300-01
Chr07	irgsp1_rep	five_prime_UTR	6697891	6697975	.	-	.	Parent=Os07t0221300-01
Chr07	irgsp1_rep	five_prime_UTR	6697683	6697767	.	-	.	Parent=Os07t0221300-01
Chr07	irgsp1_rep	five_prime_UTR	6696553	6697544	.	-	.	Parent=Os07t0221300-01
Chr07	irgsp1_rep	CDS	6696391	6696552	.	-	0	Parent=Os07t0221300-01
Chr07	irgsp1_rep	three_prime_UTR	6696335	6696390	.	-	.	Parent=Os07t0221300-01
Chr07	irgsp1_rep	three_prime_UTR	6695941	6695997	.	-	.	Parent=Os07t0221300-01
Chr07	irgsp1_rep	three_prime_UTR	6695014	6695268	.	-	.	Parent=Os07t0221300-01
Chr07	irgsp1_rep	mRNA	6745692	6746344	.	-	.	ID=Os07t0222000-01;Name=Os07t0222000-01;Locus_id=Os07g0222000;Oryzabase Gene Symbol Synonym(s)=OsEnS-101;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 101;Note=Similar to Alpha-amylase/trypsin inhibitor (RBI) (RATI).;Transcript_evidence=AK107870 (DDBJ%2C Best hit);ORF_evidence=A0MLU9 (UniProt);GO=Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Cereal seed allergen/trypsin and alpha-amylase inhibitor%2C conserved site (IPR006105),Cereal seed allergen/grain softness/trypsin and alpha-amylase inhibitor (IPR006106),Bifunctional trypsin/alpha-amylase inhibitor (IPR013771),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=002-134-C06;Oryzabase=18404;Expression=AK107870;TENOR=Os07t0222000-01;KEGG=Os07t0222000-01
Chr07	irgsp1_rep	five_prime_UTR	6746293	6746344	.	-	.	Parent=Os07t0222000-01
Chr07	irgsp1_rep	CDS	6745846	6746292	.	-	0	Parent=Os07t0222000-01
Chr07	irgsp1_rep	three_prime_UTR	6745692	6745845	.	-	.	Parent=Os07t0222000-01
Chr07	irgsp1_rep	mRNA	6748608	6753793	.	-	.	ID=Os07t0222200-01;Name=Os07t0222200-01;Locus_id=Os07g0222200;Note=Protein of unknown function DUF594 domain containing protein.;Transcript_evidence=AK107502 (DDBJ%2C Best hit);ORF_evidence=A0MLT9 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);NIAS_FLcDNA=002-129-E02;TENOR=Os07t0222200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	6753793	6753793	.	-	.	Parent=Os07t0222200-01
Chr07	irgsp1_rep	CDS	6752017	6753792	.	-	0	Parent=Os07t0222200-01
Chr07	irgsp1_rep	CDS	6748838	6749521	.	-	0	Parent=Os07t0222200-01
Chr07	irgsp1_rep	three_prime_UTR	6748608	6748837	.	-	.	Parent=Os07t0222200-01
Chr07	irgsp1_rep	mRNA	6763498	6767271	.	-	.	ID=Os07t0222300-01;Name=Os07t0222300-01;Locus_id=Os07g0222300;RAP-DB Gene Symbol Synonym(s)=EIF3E%2C eIF-3e%2C OseIF3e;RAP-DB Gene Name Synonym(s)=EUKARYOTIC INITIATION FACTOR 3E%2C eukaryotic translation initiation factor 3 subunit E;CGSNL Gene Symbol=EIF3E;CGSNL Gene Name=EUKARYOTIC INITIATION FACTOR 3E;Oryzabase Gene Symbol Synonym(s)=eIF-3e%2C OseIF3e;Oryzabase Gene Name Synonym(s)=Eukaryotic translation initiation factor 3 subunit e;Note=Eukaryotic translation initiation factor 3 subunit E%2C Organ growth and pollen development;Transcript_evidence=AK065461;ORF_evidence=Q8GVI0;GO=Molecular Function: translation initiation factor activity (GO:0003743),Molecular Function: protein binding (GO:0005515),Cellular Component: cytoplasm (GO:0005737),Cellular Component: eukaryotic translation initiation factor 3 complex (GO:0005852);InterPro=Eukaryotic translation initiation factor 3 subunit E (IPR016650),Eukaryotic translation initiation factor 3 subunit E%2C N-terminal (IPR019010),Tetratricopeptide-like helical domain (IPR011990),Proteasome component (PCI) domain (IPR000717),Winged helix-turn-helix DNA-binding domain (IPR011991);NIAS_FLcDNA=J013021F09;Manual Curation=October 7%2C 2016;Literature_PMID=27703462,23147221;Oryzabase=14360;Expression=AK065461;TENOR=Os07t0222300-01;KEGG=Os07t0222300-01
Chr07	irgsp1_rep	five_prime_UTR	6767200	6767271	.	-	.	Parent=Os07t0222300-01
Chr07	irgsp1_rep	CDS	6766837	6767199	.	-	0	Parent=Os07t0222300-01
Chr07	irgsp1_rep	CDS	6766161	6766388	.	-	0	Parent=Os07t0222300-01
Chr07	irgsp1_rep	CDS	6765931	6766052	.	-	0	Parent=Os07t0222300-01
Chr07	irgsp1_rep	CDS	6765232	6765451	.	-	1	Parent=Os07t0222300-01
Chr07	irgsp1_rep	CDS	6764634	6764776	.	-	0	Parent=Os07t0222300-01
Chr07	irgsp1_rep	CDS	6764108	6764245	.	-	1	Parent=Os07t0222300-01
Chr07	irgsp1_rep	CDS	6763867	6763972	.	-	1	Parent=Os07t0222300-01
Chr07	irgsp1_rep	three_prime_UTR	6763498	6763866	.	-	.	Parent=Os07t0222300-01
Chr07	irgsp1_rep	mRNA	6763626	6765347	.	-	.	ID=Os07t0222300-02;Name=Os07t0222300-02;Locus_id=Os07g0222300;CGSNL Gene Symbol=EIF3E;CGSNL Gene Name=EUKARYOTIC INITIATION FACTOR 3E;Oryzabase Gene Symbol Synonym(s)=eIF-3e%2C OseIF3e;Oryzabase Gene Name Synonym(s)=Eukaryotic translation initiation factor 3 subunit e;Note=Similar to Eukaryotic initiation factor 3e.;Transcript_evidence=AK062040 (DDBJ%2C Best hit);ORF_evidence=A0MLU6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Proteasome component (PCI) domain (IPR000717),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=001-044-A02;Oryzabase=14360;Expression=AK062040;TENOR=Os07t0222300-02;KEGG=Os07t0222300-02
Chr07	irgsp1_rep	five_prime_UTR	6765346	6765347	.	-	.	Parent=Os07t0222300-02
Chr07	irgsp1_rep	CDS	6765232	6765345	.	-	0	Parent=Os07t0222300-02
Chr07	irgsp1_rep	CDS	6764634	6764776	.	-	0	Parent=Os07t0222300-02
Chr07	irgsp1_rep	CDS	6764108	6764245	.	-	1	Parent=Os07t0222300-02
Chr07	irgsp1_rep	CDS	6763867	6763972	.	-	1	Parent=Os07t0222300-02
Chr07	irgsp1_rep	three_prime_UTR	6763626	6763866	.	-	.	Parent=Os07t0222300-02
Chr07	irgsp1_rep	mRNA	6790809	6796518	.	+	.	ID=Os07t0222700-01;Name=Os07t0222700-01;Locus_id=Os07g0222700;Note=Conserved hypothetical protein.;Transcript_evidence=AK102206 (DDBJ%2C Best hit);ORF_evidence=A3BHV9 (UniProt);NIAS_FLcDNA=J033087G15;TENOR=Os07t0222700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	6790809	6790871	.	+	.	Parent=Os07t0222700-01
Chr07	irgsp1_rep	CDS	6790872	6790918	.	+	0	Parent=Os07t0222700-01
Chr07	irgsp1_rep	CDS	6791293	6791836	.	+	1	Parent=Os07t0222700-01
Chr07	irgsp1_rep	CDS	6794998	6795003	.	+	0	Parent=Os07t0222700-01
Chr07	irgsp1_rep	three_prime_UTR	6795004	6796518	.	+	.	Parent=Os07t0222700-01
Chr07	irgsp1_rep	mRNA	6798982	6799745	.	+	.	ID=Os07t0222800-01;Name=Os07t0222800-01;Locus_id=Os07g0222800;Note=Acyl carrier protein-like protein.;Transcript_evidence=AK100823 (DDBJ%2C Best hit);ORF_evidence=A2YJI8 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Molecular Function: acyl carrier activity (GO:0000036),Molecular Function: phosphopantetheine binding (GO:0031177),Molecular Function: cofactor binding (GO:0048037);InterPro=Acyl carrier protein (ACP) (IPR003231),Phosphopantetheine attachment site (IPR006162),Phosphopantetheine-binding (IPR006163),Acyl carrier protein-like (IPR009081);NIAS_FLcDNA=J023122I22;Expression=AK100823;TENOR=Os07t0222800-01;KEGG=Os07t0222800-01 (EC:1.6.5.3%2C EC:1.6.99.3)
Chr07	irgsp1_rep	five_prime_UTR	6798982	6799063	.	+	.	Parent=Os07t0222800-01
Chr07	irgsp1_rep	CDS	6799064	6799282	.	+	0	Parent=Os07t0222800-01
Chr07	irgsp1_rep	CDS	6799359	6799535	.	+	0	Parent=Os07t0222800-01
Chr07	irgsp1_rep	three_prime_UTR	6799536	6799745	.	+	.	Parent=Os07t0222800-01
Chr07	irgsp1_rep	mRNA	6799009	6799745	.	+	.	ID=Os07t0222800-02;Name=Os07t0222800-02;Locus_id=Os07g0222800;Note=Acyl carrier protein-like protein.;Transcript_evidence=AK060442 (DDBJ%2C Best hit),AK103131 (DDBJ%2C Best hit);ORF_evidence=A2YJI8 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Molecular Function: acyl carrier activity (GO:0000036),Molecular Function: phosphopantetheine binding (GO:0031177),Molecular Function: cofactor binding (GO:0048037);InterPro=Acyl carrier protein (ACP) (IPR003231),Phosphopantetheine attachment site (IPR006162),Phosphopantetheine-binding (IPR006163),Acyl carrier protein-like (IPR009081);NIAS_FLcDNA=001-011-E04,J033120B22;TENOR=Os07t0222800-02
Chr07	irgsp1_rep	five_prime_UTR	6799009	6799063	.	+	.	Parent=Os07t0222800-02
Chr07	irgsp1_rep	CDS	6799064	6799282	.	+	0	Parent=Os07t0222800-02
Chr07	irgsp1_rep	CDS	6799359	6799535	.	+	0	Parent=Os07t0222800-02
Chr07	irgsp1_rep	three_prime_UTR	6799536	6799745	.	+	.	Parent=Os07t0222800-02
Chr07	irgsp1_rep	mRNA	6803395	6806607	.	+	.	ID=Os07t0222900-01;Name=Os07t0222900-01;Locus_id=Os07g0222900;Note=Similar to KHG/KDPG aldolase.;Transcript_evidence=AK241980 (DDBJ%2C Best hit);ORF_evidence=NP_001150487.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=KDPG/KHG aldolase (IPR000887),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J075097J20;TENOR=Os07t0222900-01;KEGG=Os07t0222900-01
Chr07	irgsp1_rep	five_prime_UTR	6803395	6803440	.	+	.	Parent=Os07t0222900-01
Chr07	irgsp1_rep	CDS	6803441	6803595	.	+	0	Parent=Os07t0222900-01
Chr07	irgsp1_rep	CDS	6803744	6803798	.	+	1	Parent=Os07t0222900-01
Chr07	irgsp1_rep	CDS	6804016	6804051	.	+	0	Parent=Os07t0222900-01
Chr07	irgsp1_rep	CDS	6804168	6804212	.	+	0	Parent=Os07t0222900-01
Chr07	irgsp1_rep	CDS	6804400	6804405	.	+	0	Parent=Os07t0222900-01
Chr07	irgsp1_rep	three_prime_UTR	6804406	6804428	.	+	.	Parent=Os07t0222900-01
Chr07	irgsp1_rep	three_prime_UTR	6804519	6804554	.	+	.	Parent=Os07t0222900-01
Chr07	irgsp1_rep	three_prime_UTR	6804639	6804722	.	+	.	Parent=Os07t0222900-01
Chr07	irgsp1_rep	three_prime_UTR	6805030	6805095	.	+	.	Parent=Os07t0222900-01
Chr07	irgsp1_rep	three_prime_UTR	6805175	6805213	.	+	.	Parent=Os07t0222900-01
Chr07	irgsp1_rep	three_prime_UTR	6805439	6805528	.	+	.	Parent=Os07t0222900-01
Chr07	irgsp1_rep	three_prime_UTR	6805781	6806607	.	+	.	Parent=Os07t0222900-01
Chr07	irgsp1_rep	mRNA	6803730	6806860	.	-	.	ID=Os07t0223001-01;Name=Os07t0223001-01;Locus_id=Os07g0223001;Note=Non-protein coding transcript.;Transcript_evidence=AK288353 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090024F22;TENOR=Os07t0223001-01
Chr07	irgsp1_rep	exon	6803730	6806860	.	-	.	Parent=Os07t0223001-01
Chr07	irgsp1_rep	mRNA	6809283	6812420	.	+	.	ID=Os07t0223100-01;Name=Os07t0223100-01;Locus_id=Os07g0223100;CGSNL Gene Symbol=ARFA1C;CGSNL Gene Name=ADP-RIBOSYLATION FACTOR A1C;Oryzabase Gene Symbol Synonym(s)=OsARFA1c%2C ARFA1c;Oryzabase Gene Name Synonym(s)=ADP-ribosylation factor A1c;Note=Similar to ADP-ribosylation factor 1.;Transcript_evidence=AK243518 (DDBJ%2C Best hit);ORF_evidence=NP_001147310.1 (RefSeq);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C SAR1-type (IPR006687),Small GTPase superfamily%2C ARF/SAR type (IPR006689),Small GTPase superfamily%2C ARF type (IPR024156);NIAS_FLcDNA=J100075G09;Oryzabase=21005;TENOR=Os07t0223100-01;KEGG=Os07t0223100-01
Chr07	irgsp1_rep	five_prime_UTR	6809283	6809363	.	+	.	Parent=Os07t0223100-01
Chr07	irgsp1_rep	five_prime_UTR	6809644	6809666	.	+	.	Parent=Os07t0223100-01
Chr07	irgsp1_rep	CDS	6809667	6809814	.	+	0	Parent=Os07t0223100-01
Chr07	irgsp1_rep	CDS	6810606	6810676	.	+	2	Parent=Os07t0223100-01
Chr07	irgsp1_rep	CDS	6810912	6811031	.	+	0	Parent=Os07t0223100-01
Chr07	irgsp1_rep	CDS	6811498	6811616	.	+	0	Parent=Os07t0223100-01
Chr07	irgsp1_rep	CDS	6811889	6811970	.	+	1	Parent=Os07t0223100-01
Chr07	irgsp1_rep	CDS	6812098	6812103	.	+	0	Parent=Os07t0223100-01
Chr07	irgsp1_rep	three_prime_UTR	6812104	6812420	.	+	.	Parent=Os07t0223100-01
Chr07	irgsp1_rep	mRNA	6822700	6825665	.	+	.	ID=Os07t0223400-01;Name=Os07t0223400-01;Locus_id=Os07g0223400;Oryzabase Gene Symbol Synonym(s)=OsARFA1d%2C ARFA1d;Oryzabase Gene Name Synonym(s)=ADP-ribosylation factor 1%2C ADP-ribosylation factor 4%2C ADP-ribosylation factor A1d;Note=Similar to ADP-ribosylation factor 1.;Transcript_evidence=AK242214 (DDBJ%2C Best hit);ORF_evidence=NP_001147310.1 (RefSeq);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C SAR1-type (IPR006687),Small GTPase superfamily%2C ARF/SAR type (IPR006689),Small GTPase superfamily%2C ARF type (IPR024156);NIAS_FLcDNA=J075171N24;Oryzabase=16684;TENOR=Os07t0223400-01;KEGG=Os07t0223400-01
Chr07	irgsp1_rep	five_prime_UTR	6822700	6822777	.	+	.	Parent=Os07t0223400-01
Chr07	irgsp1_rep	five_prime_UTR	6823009	6823038	.	+	.	Parent=Os07t0223400-01
Chr07	irgsp1_rep	CDS	6823039	6823186	.	+	0	Parent=Os07t0223400-01
Chr07	irgsp1_rep	CDS	6824304	6824374	.	+	2	Parent=Os07t0223400-01
Chr07	irgsp1_rep	CDS	6824580	6824699	.	+	0	Parent=Os07t0223400-01
Chr07	irgsp1_rep	CDS	6824887	6825005	.	+	0	Parent=Os07t0223400-01
Chr07	irgsp1_rep	CDS	6825221	6825302	.	+	1	Parent=Os07t0223400-01
Chr07	irgsp1_rep	CDS	6825436	6825441	.	+	0	Parent=Os07t0223400-01
Chr07	irgsp1_rep	three_prime_UTR	6825442	6825665	.	+	.	Parent=Os07t0223400-01
Chr07	irgsp1_rep	mRNA	6841477	6844677	.	+	.	ID=Os07t0223700-00;Name=Os07t0223700-00;Locus_id=Os07g0223700;Note=Similar to predicted protein.;Transcript_evidence=EU969712 (DDBJ);ORF_evidence=NP_001059208.2 (RefSeq);TENOR=Os07t0223700-00;KEGG=Os07t0223700-00
Chr07	irgsp1_rep	five_prime_UTR	6841477	6841498	.	+	.	Parent=Os07t0223700-00
Chr07	irgsp1_rep	CDS	6841499	6841627	.	+	0	Parent=Os07t0223700-00
Chr07	irgsp1_rep	CDS	6843019	6843212	.	+	0	Parent=Os07t0223700-00
Chr07	irgsp1_rep	CDS	6843767	6844085	.	+	1	Parent=Os07t0223700-00
Chr07	irgsp1_rep	CDS	6844390	6844677	.	+	0	Parent=Os07t0223700-00
Chr07	irgsp1_rep	mRNA	6843741	6844490	.	-	.	ID=Os07t0223733-00;Name=Os07t0223733-00;Locus_id=Os07g0223733;Note=Non-protein coding transcript.;Transcript_evidence=BT016899 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0223733-00
Chr07	irgsp1_rep	exon	6844376	6844490	.	-	.	Parent=Os07t0223733-00
Chr07	irgsp1_rep	exon	6843741	6844077	.	-	.	Parent=Os07t0223733-00
Chr07	irgsp1_rep	mRNA	6849842	6851728	.	-	.	ID=Os07t0223766-01;Name=Os07t0223766-01;Locus_id=Os07g0223766;Note=Hypothetical conserved gene.;Transcript_evidence=AK243405 (DDBJ%2C Best hit);ORF_evidence=B9FW84 (UniProt);NIAS_FLcDNA=J100065D18;TENOR=Os07t0223766-01;KEGG=Os07t0223766-01
Chr07	irgsp1_rep	five_prime_UTR	6851524	6851728	.	-	.	Parent=Os07t0223766-01
Chr07	irgsp1_rep	CDS	6851427	6851523	.	-	0	Parent=Os07t0223766-01
Chr07	irgsp1_rep	CDS	6851173	6851291	.	-	2	Parent=Os07t0223766-01
Chr07	irgsp1_rep	three_prime_UTR	6849842	6851172	.	-	.	Parent=Os07t0223766-01
Chr07	irgsp1_rep	mRNA	6865346	6866628	.	+	.	ID=Os07t0224000-00;Name=Os07t0224000-00;Locus_id=Os07g0224000;Note=Similar to 60S ribosomal protein L24.;Transcript_evidence=BT037610 (DDBJ);ORF_evidence=NP_001150133.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L24e-related (IPR000988),Ribosomal protein L24e domain (IPR023441),Ribosomal protein L24e%2C conserved site (IPR023442);TENOR=Os07t0224000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	6865346	6865720	.	+	0	Parent=Os07t0224000-00
Chr07	irgsp1_rep	CDS	6866000	6866148	.	+	0	Parent=Os07t0224000-00
Chr07	irgsp1_rep	CDS	6866481	6866628	.	+	1	Parent=Os07t0224000-00
Chr07	irgsp1_rep	mRNA	6865634	6866196	.	-	.	ID=Os07t0224066-00;Name=Os07t0224066-00;Locus_id=Os07g0224066;Note=Hypothetical conserved gene.;Transcript_evidence=BT065526 (DDBJ);ORF_evidence=C0HHH7 (UniProt);TENOR=Os07t0224066-00
Chr07	irgsp1_rep	CDS	6866005	6866196	.	-	0	Parent=Os07t0224066-00
Chr07	irgsp1_rep	three_prime_UTR	6865998	6866004	.	-	.	Parent=Os07t0224066-00
Chr07	irgsp1_rep	three_prime_UTR	6865634	6865718	.	-	.	Parent=Os07t0224066-00
Chr07	irgsp1_rep	mRNA	6880883	6884359	.	+	.	ID=Os07t0224132-01;Name=Os07t0224132-01;Locus_id=Os07g0224132;Note=Hypothetical gene.;Transcript_evidence=AK288950 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090083J18;TENOR=Os07t0224132-01;KEGG=Os07t0224132-01
Chr07	irgsp1_rep	five_prime_UTR	6880883	6883803	.	+	.	Parent=Os07t0224132-01
Chr07	irgsp1_rep	CDS	6883804	6884127	.	+	0	Parent=Os07t0224132-01
Chr07	irgsp1_rep	three_prime_UTR	6884128	6884359	.	+	.	Parent=Os07t0224132-01
Chr07	irgsp1_rep	mRNA	6917753	6921834	.	-	.	ID=Os07t0224550-01;Name=Os07t0224550-01;Locus_id=Os07g0224550;Note=Conserved hypothetical protein.;Transcript_evidence=AK288684 (DDBJ%2C Best hit);ORF_evidence=Q67VU8 (UniProt);NIAS_FLcDNA=J090059M06;TENOR=Os07t0224550-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	6919923	6921834	.	-	.	Parent=Os07t0224550-01
Chr07	irgsp1_rep	CDS	6919656	6919922	.	-	0	Parent=Os07t0224550-01
Chr07	irgsp1_rep	three_prime_UTR	6917753	6919655	.	-	.	Parent=Os07t0224550-01
Chr07	irgsp1_rep	mRNA	6934243	6935287	.	+	.	ID=Os07t0224701-01;Name=Os07t0224701-01;Locus_id=Os07g0224701;Note=Hypothetical gene.;Transcript_evidence=AK241785 (DDBJ%2C Best hit);ORF_evidence=NP_001175106.1 (RefSeq);NIAS_FLcDNA=J065207A12;TENOR=Os07t0224701-01;KEGG=Os07t0224701-01
Chr07	irgsp1_rep	five_prime_UTR	6934243	6934764	.	+	.	Parent=Os07t0224701-01
Chr07	irgsp1_rep	CDS	6934765	6935043	.	+	0	Parent=Os07t0224701-01
Chr07	irgsp1_rep	three_prime_UTR	6935044	6935287	.	+	.	Parent=Os07t0224701-01
Chr07	irgsp1_rep	mRNA	6949934	6951925	.	+	.	ID=Os07t0224900-02;Name=Os07t0224900-02;Locus_id=Os07g0224900;Oryzabase Gene Symbol Synonym(s)=OsWD40-138%2C OsSERL7;Oryzabase Gene Name Synonym(s)=SERK-like gene 7;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK111745 (DDBJ%2C Best hit),AK099214 (DDBJ%2C Best hit);ORF_evidence=NP_001150682.1 (RefSeq);GO=Biological Process: rRNA processing (GO:0006364),Cellular Component: nucleolus (GO:0005730),Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),U3 small nucleolar RNA-associated protein 15%2C C-terminal (IPR018983),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J023052H04,J013079F16;Oryzabase=10819;Expression=AK111745;TENOR=Os07t0224900-02;KEGG=Os07t0224900-02
Chr07	irgsp1_rep	five_prime_UTR	6949934	6950028	.	+	.	Parent=Os07t0224900-02
Chr07	irgsp1_rep	CDS	6950029	6951630	.	+	0	Parent=Os07t0224900-02
Chr07	irgsp1_rep	three_prime_UTR	6951631	6951925	.	+	.	Parent=Os07t0224900-02
Chr07	irgsp1_rep	mRNA	6949993	6951793	.	+	.	ID=Os07t0224900-03;Name=Os07t0224900-03;Locus_id=Os07g0224900;Oryzabase Gene Symbol Synonym(s)=OsWD40-138%2C OsSERL7;Oryzabase Gene Name Synonym(s)=SERK-like gene 7;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK111771 (DDBJ%2C Best hit);ORF_evidence=NP_001150682.1 (RefSeq);GO=Biological Process: rRNA processing (GO:0006364),Cellular Component: nucleolus (GO:0005730),Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),U3 small nucleolar RNA-associated protein 15%2C C-terminal (IPR018983),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J023074H04;Oryzabase=10819;Expression=AK111771;TENOR=Os07t0224900-03;KEGG=Os07t0224900-03
Chr07	irgsp1_rep	five_prime_UTR	6949993	6950028	.	+	.	Parent=Os07t0224900-03
Chr07	irgsp1_rep	CDS	6950029	6950252	.	+	0	Parent=Os07t0224900-03
Chr07	irgsp1_rep	CDS	6950493	6951630	.	+	1	Parent=Os07t0224900-03
Chr07	irgsp1_rep	three_prime_UTR	6951631	6951793	.	+	.	Parent=Os07t0224900-03
Chr07	irgsp1_rep	mRNA	6954563	6955906	.	-	.	ID=Os07t0225000-01;Name=Os07t0225000-01;Locus_id=Os07g0225000;Note=Conserved hypothetical protein.;Transcript_evidence=AK242579 (DDBJ%2C Best hit);ORF_evidence=NP_001175107.1 (RefSeq);NIAS_FLcDNA=J090009I07;TENOR=Os07t0225000-01;KEGG=Os07t0225000-01
Chr07	irgsp1_rep	five_prime_UTR	6955744	6955906	.	-	.	Parent=Os07t0225000-01
Chr07	irgsp1_rep	CDS	6955099	6955743	.	-	0	Parent=Os07t0225000-01
Chr07	irgsp1_rep	three_prime_UTR	6954563	6955098	.	-	.	Parent=Os07t0225000-01
Chr07	irgsp1_rep	mRNA	6954839	6957953	.	+	.	ID=Os07t0225100-01;Name=Os07t0225100-01;Locus_id=Os07g0225100;Note=Tryptophan/tyrosine permease domain containing protein.;Transcript_evidence=AK064193 (DDBJ%2C Best hit);ORF_evidence=B6TS04 (UniProt);InterPro=Tryptophan/tyrosine permease (IPR018227);NIAS_FLcDNA=002-104-D01;Expression=AK064193;TENOR=Os07t0225100-01;KEGG=Os07t0225100-01
Chr07	irgsp1_rep	five_prime_UTR	6954839	6954858	.	+	.	Parent=Os07t0225100-01
Chr07	irgsp1_rep	CDS	6954859	6955503	.	+	0	Parent=Os07t0225100-01
Chr07	irgsp1_rep	CDS	6955828	6956279	.	+	0	Parent=Os07t0225100-01
Chr07	irgsp1_rep	CDS	6957754	6957847	.	+	1	Parent=Os07t0225100-01
Chr07	irgsp1_rep	three_prime_UTR	6957848	6957953	.	+	.	Parent=Os07t0225100-01
Chr07	irgsp1_rep	mRNA	6968003	6969254	.	+	.	ID=Os07t0225300-01;Name=Os07t0225300-01;Locus_id=Os07g0225300;CGSNL Gene Symbol=NAC3;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsNAC3%2C NAC67%2C ONAC067%2C OnNAC3*%2C OsNAC3/ONAC067%2C DLN180%2C OsDLN180;Oryzabase Gene Name Synonym(s)=NAC 3%2C OsNAC gene-3%2C ONNAC GENE 3%2C NAC domain-containing protein 67%2C DLN repressor 180%2C DLN motif protein 180;Note=OsNAC3 protein.;Transcript_evidence=AK073667 (DDBJ%2C Best hit);ORF_evidence=Q7EZT1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=J033052E11;Oryzabase=2260;Expression=AK073667;TENOR=Os07t0225300-01;KEGG=Os07t0225300-01
Chr07	irgsp1_rep	five_prime_UTR	6968003	6968057	.	+	.	Parent=Os07t0225300-01
Chr07	irgsp1_rep	CDS	6968058	6968888	.	+	0	Parent=Os07t0225300-01
Chr07	irgsp1_rep	three_prime_UTR	6968889	6969254	.	+	.	Parent=Os07t0225300-01
Chr07	irgsp1_rep	mRNA	7053727	7054324	.	-	.	ID=Os07t0226200-01;Name=Os07t0226200-01;Locus_id=Os07g0226200;Note=Hypothetical protein.;Transcript_evidence=AK108016 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-135-H10;TENOR=Os07t0226200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	7054323	7054324	.	-	.	Parent=Os07t0226200-01
Chr07	irgsp1_rep	CDS	7053933	7054322	.	-	0	Parent=Os07t0226200-01
Chr07	irgsp1_rep	three_prime_UTR	7053727	7053932	.	-	.	Parent=Os07t0226200-01
Chr07	irgsp1_rep	mRNA	7071077	7074459	.	-	.	ID=Os07t0226601-01;Name=Os07t0226601-01;Locus_id=Os07g0226601;Note=Non-protein coding transcript.;Transcript_evidence=AK288352 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090024D08;TENOR=Os07t0226601-01
Chr07	irgsp1_rep	exon	7071077	7074459	.	-	.	Parent=Os07t0226601-01
Chr07	irgsp1_rep	mRNA	7106967	7110125	.	+	.	ID=Os07t0227200-01;Name=Os07t0227200-01;Locus_id=Os07g0227200;Note=Conserved hypothetical protein.;Transcript_evidence=AK071918 (DDBJ%2C Best hit);ORF_evidence=A3BHY1 (UniProt);NIAS_FLcDNA=J013072M12;TENOR=Os07t0227200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	7106967	7107174	.	+	.	Parent=Os07t0227200-01
Chr07	irgsp1_rep	CDS	7107175	7107690	.	+	0	Parent=Os07t0227200-01
Chr07	irgsp1_rep	three_prime_UTR	7107691	7110125	.	+	.	Parent=Os07t0227200-01
Chr07	irgsp1_rep	mRNA	7110702	7112739	.	-	.	ID=Os07t0227300-00;Name=Os07t0227300-00;Locus_id=Os07g0227300;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=BT066799 (DDBJ);ORF_evidence=Q8H2M1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Cellular Component: cell surface (GO:0009986),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Surface protein from Gram-positive cocci (IPR001899),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os07t0227300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	7110757	7112739	.	-	0	Parent=Os07t0227300-00
Chr07	irgsp1_rep	three_prime_UTR	7110702	7110756	.	-	.	Parent=Os07t0227300-00
Chr07	irgsp1_rep	mRNA	7120786	7126413	.	+	.	ID=Os07t0227400-01;Name=Os07t0227400-01;Locus_id=Os07g0227400;Note=Similar to RNA binding/signal transduction protein QkI-4.;Transcript_evidence=AK069634 (DDBJ%2C Best hit);ORF_evidence=NP_001150031.1 (RefSeq);GO=Molecular Function: RNA binding (GO:0003723);InterPro=K Homology (IPR004087),K Homology%2C type 1 (IPR004088),K Homology%2C type 1%2C subgroup (IPR018111);NIAS_FLcDNA=J023024E22;Expression=AK069634;TENOR=Os07t0227400-01;KEGG=Os07t0227400-01
Chr07	irgsp1_rep	five_prime_UTR	7120786	7120819	.	+	.	Parent=Os07t0227400-01
Chr07	irgsp1_rep	CDS	7120820	7120905	.	+	0	Parent=Os07t0227400-01
Chr07	irgsp1_rep	CDS	7121066	7121154	.	+	1	Parent=Os07t0227400-01
Chr07	irgsp1_rep	CDS	7122706	7122857	.	+	2	Parent=Os07t0227400-01
Chr07	irgsp1_rep	CDS	7123098	7123226	.	+	0	Parent=Os07t0227400-01
Chr07	irgsp1_rep	CDS	7123309	7123425	.	+	0	Parent=Os07t0227400-01
Chr07	irgsp1_rep	CDS	7124197	7124340	.	+	0	Parent=Os07t0227400-01
Chr07	irgsp1_rep	CDS	7125797	7125940	.	+	0	Parent=Os07t0227400-01
Chr07	irgsp1_rep	three_prime_UTR	7125941	7126413	.	+	.	Parent=Os07t0227400-01
Chr07	irgsp1_rep	mRNA	7139927	7140775	.	-	.	ID=Os07t0227600-00;Name=Os07t0227600-00;Locus_id=Os07g0227600;CGSNL Gene Symbol=ERF57;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 57;Oryzabase Gene Symbol Synonym(s)=OsERF#057%2C OsERF057%2C OsERF57%2C AP2/EREBP#145%2C AP2/EREBP145;Oryzabase Gene Name Synonym(s)=ethylene response factor 57%2C APETALA2/ethylene-responsive element binding protein 145;Note=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8H2L8 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);Oryzabase=10573;TENOR=Os07t0227600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	7139927	7140775	.	-	0	Parent=Os07t0227600-00
Chr07	irgsp1_rep	mRNA	7145549	7149736	.	+	.	ID=Os07t0227700-01;Name=Os07t0227700-01;Locus_id=Os07g0227700;Note=EGF-like region%2C conserved site domain containing protein.;Transcript_evidence=AK120258 (DDBJ%2C Best hit);ORF_evidence=XP_002868324.1 (RefSeq);NIAS_FLcDNA=J013046A20;Expression=AK120258;TENOR=Os07t0227700-01;KEGG=Os07t0227700-01
Chr07	irgsp1_rep	five_prime_UTR	7145549	7145650	.	+	.	Parent=Os07t0227700-01
Chr07	irgsp1_rep	CDS	7146472	7146743	.	+	0	Parent=Os07t0227700-01
Chr07	irgsp1_rep	CDS	7146987	7147638	.	+	1	Parent=Os07t0227700-01
Chr07	irgsp1_rep	CDS	7147730	7147929	.	+	0	Parent=Os07t0227700-01
Chr07	irgsp1_rep	CDS	7148017	7148261	.	+	1	Parent=Os07t0227700-01
Chr07	irgsp1_rep	CDS	7148403	7149541	.	+	2	Parent=Os07t0227700-01
Chr07	irgsp1_rep	three_prime_UTR	7149542	7149736	.	+	.	Parent=Os07t0227700-01
Chr07	irgsp1_rep	mRNA	7152849	7155428	.	+	.	ID=Os07t0227750-01;Name=Os07t0227750-01;Locus_id=Os07g0227750;Note=Hypothetical gene.;Transcript_evidence=AK242283 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J075189G01;TENOR=Os07t0227750-01;KEGG=Os07t0227750-01
Chr07	irgsp1_rep	five_prime_UTR	7152849	7153246	.	+	.	Parent=Os07t0227750-01
Chr07	irgsp1_rep	five_prime_UTR	7153429	7153539	.	+	.	Parent=Os07t0227750-01
Chr07	irgsp1_rep	five_prime_UTR	7153958	7154136	.	+	.	Parent=Os07t0227750-01
Chr07	irgsp1_rep	five_prime_UTR	7154323	7154477	.	+	.	Parent=Os07t0227750-01
Chr07	irgsp1_rep	CDS	7154478	7154720	.	+	0	Parent=Os07t0227750-01
Chr07	irgsp1_rep	three_prime_UTR	7154721	7155428	.	+	.	Parent=Os07t0227750-01
Chr07	irgsp1_rep	mRNA	7152964	7158005	.	-	.	ID=Os07t0227800-00;Name=Os07t0227800-00;Locus_id=Os07g0227800;Oryzabase Gene Name Synonym(s)=ABC1 family domain containing protein;Note=Similar to ubiquinone biosynthesis protein ubiB.;Transcript_evidence=EU966367 (DDBJ);ORF_evidence=B6TN02 (UniProt);GO=Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=ABC-1 (IPR004147),Protein kinase-like domain (IPR011009);Oryzabase=21867;TENOR=Os07t0227800-00;KEGG=Os07t0227800-00
Chr07	irgsp1_rep	CDS	7157798	7158005	.	-	0	Parent=Os07t0227800-00
Chr07	irgsp1_rep	CDS	7157527	7157643	.	-	2	Parent=Os07t0227800-00
Chr07	irgsp1_rep	CDS	7156975	7157117	.	-	2	Parent=Os07t0227800-00
Chr07	irgsp1_rep	CDS	7156555	7156668	.	-	0	Parent=Os07t0227800-00
Chr07	irgsp1_rep	CDS	7155975	7156163	.	-	0	Parent=Os07t0227800-00
Chr07	irgsp1_rep	CDS	7155739	7155894	.	-	0	Parent=Os07t0227800-00
Chr07	irgsp1_rep	CDS	7154535	7154800	.	-	0	Parent=Os07t0227800-00
Chr07	irgsp1_rep	CDS	7154323	7154420	.	-	1	Parent=Os07t0227800-00
Chr07	irgsp1_rep	CDS	7153958	7154136	.	-	2	Parent=Os07t0227800-00
Chr07	irgsp1_rep	CDS	7153429	7153539	.	-	0	Parent=Os07t0227800-00
Chr07	irgsp1_rep	CDS	7153067	7153246	.	-	0	Parent=Os07t0227800-00
Chr07	irgsp1_rep	three_prime_UTR	7152964	7153066	.	-	.	Parent=Os07t0227800-00
Chr07	irgsp1_rep	mRNA	7160704	7171403	.	-	.	ID=Os07t0228000-01;Name=Os07t0228000-01;Locus_id=Os07g0228000;Note=Hypothetical conserved gene.;Transcript_evidence=AK288388 (DDBJ%2C Best hit);ORF_evidence=Q8H2L2 (UniProt);NIAS_FLcDNA=J090027F05;TENOR=Os07t0228000-01;KEGG=Os07t0228000-01
Chr07	irgsp1_rep	five_prime_UTR	7170889	7171403	.	-	.	Parent=Os07t0228000-01
Chr07	irgsp1_rep	five_prime_UTR	7169941	7170043	.	-	.	Parent=Os07t0228000-01
Chr07	irgsp1_rep	five_prime_UTR	7169794	7169869	.	-	.	Parent=Os07t0228000-01
Chr07	irgsp1_rep	five_prime_UTR	7168939	7169062	.	-	.	Parent=Os07t0228000-01
Chr07	irgsp1_rep	five_prime_UTR	7168292	7168846	.	-	.	Parent=Os07t0228000-01
Chr07	irgsp1_rep	CDS	7162074	7162244	.	-	0	Parent=Os07t0228000-01
Chr07	irgsp1_rep	CDS	7161929	7161979	.	-	0	Parent=Os07t0228000-01
Chr07	irgsp1_rep	CDS	7160923	7161252	.	-	0	Parent=Os07t0228000-01
Chr07	irgsp1_rep	three_prime_UTR	7160704	7160922	.	-	.	Parent=Os07t0228000-01
Chr07	irgsp1_rep	mRNA	7168407	7171392	.	-	.	ID=Os07t0228000-02;Name=Os07t0228000-02;Locus_id=Os07g0228000;Note=Hypothetical conserved gene.;Transcript_evidence=AK067554 (DDBJ%2C Best hit);ORF_evidence=B8BL95 (UniProt);NIAS_FLcDNA=J013108L07;Expression=AK067554;TENOR=Os07t0228000-02;KEGG=Os07t0228000-02
Chr07	irgsp1_rep	five_prime_UTR	7170889	7171392	.	-	.	Parent=Os07t0228000-02
Chr07	irgsp1_rep	five_prime_UTR	7169941	7170043	.	-	.	Parent=Os07t0228000-02
Chr07	irgsp1_rep	five_prime_UTR	7168939	7169068	.	-	.	Parent=Os07t0228000-02
Chr07	irgsp1_rep	five_prime_UTR	7168703	7168846	.	-	.	Parent=Os07t0228000-02
Chr07	irgsp1_rep	CDS	7168478	7168702	.	-	0	Parent=Os07t0228000-02
Chr07	irgsp1_rep	three_prime_UTR	7168407	7168477	.	-	.	Parent=Os07t0228000-02
Chr07	irgsp1_rep	mRNA	7168396	7171392	.	-	.	ID=Os07t0228000-03;Name=Os07t0228000-03;Locus_id=Os07g0228000;Note=Hypothetical conserved gene.;Transcript_evidence=AK101346 (DDBJ%2C Best hit);ORF_evidence=B8BL95 (UniProt);NIAS_FLcDNA=J033034K22;TENOR=Os07t0228000-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	7170114	7171392	.	-	.	Parent=Os07t0228000-03
Chr07	irgsp1_rep	five_prime_UTR	7169941	7170043	.	-	.	Parent=Os07t0228000-03
Chr07	irgsp1_rep	five_prime_UTR	7169794	7169869	.	-	.	Parent=Os07t0228000-03
Chr07	irgsp1_rep	five_prime_UTR	7168703	7169068	.	-	.	Parent=Os07t0228000-03
Chr07	irgsp1_rep	CDS	7168478	7168702	.	-	0	Parent=Os07t0228000-03
Chr07	irgsp1_rep	three_prime_UTR	7168396	7168477	.	-	.	Parent=Os07t0228000-03
Chr07	irgsp1_rep	mRNA	7168407	7171374	.	-	.	ID=Os07t0228000-04;Name=Os07t0228000-04;Locus_id=Os07g0228000;Note=Hypothetical conserved gene.;Transcript_evidence=AK121291 (DDBJ%2C Best hit);ORF_evidence=B8BL95 (UniProt);NIAS_FLcDNA=J023109F03;TENOR=Os07t0228000-04;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	7168703	7171374	.	-	.	Parent=Os07t0228000-04
Chr07	irgsp1_rep	CDS	7168478	7168702	.	-	0	Parent=Os07t0228000-04
Chr07	irgsp1_rep	three_prime_UTR	7168407	7168477	.	-	.	Parent=Os07t0228000-04
Chr07	irgsp1_rep	mRNA	7164859	7165599	.	+	.	ID=Os07t0228300-00;Name=Os07t0228300-00;Locus_id=Os07g0228300;Note=Conserved hypothetical protein.;Transcript_evidence=CT837868 (DDBJ%2C Best hit);ORF_evidence=NP_001053187.1 (RefSeq);TENOR=Os07t0228300-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	7164859	7165133	.	+	.	Parent=Os07t0228300-00
Chr07	irgsp1_rep	CDS	7165134	7165433	.	+	0	Parent=Os07t0228300-00
Chr07	irgsp1_rep	three_prime_UTR	7165434	7165599	.	+	.	Parent=Os07t0228300-00
Chr07	irgsp1_rep	mRNA	7165550	7167725	.	-	.	ID=Os07t0228400-01;Name=Os07t0228400-01;Locus_id=Os07g0228400;Oryzabase Gene Symbol Synonym(s)=OsFbox352%2C Os_F0525;Oryzabase Gene Name Synonym(s)=F-box protein 352;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK106370 (DDBJ%2C Best hit);ORF_evidence=NP_001059221.1 (RefSeq);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-102-C08;Oryzabase=17128;TENOR=Os07t0228400-01;KEGG=Os07t0228400-01
Chr07	irgsp1_rep	five_prime_UTR	7167609	7167725	.	-	.	Parent=Os07t0228400-01
Chr07	irgsp1_rep	CDS	7166718	7167608	.	-	0	Parent=Os07t0228400-01
Chr07	irgsp1_rep	three_prime_UTR	7165550	7166717	.	-	.	Parent=Os07t0228400-01
Chr07	irgsp1_rep	mRNA	7166253	7167698	.	-	.	ID=Os07t0228400-02;Name=Os07t0228400-02;Locus_id=Os07g0228400;Oryzabase Gene Symbol Synonym(s)=OsFbox352%2C Os_F0525;Oryzabase Gene Name Synonym(s)=F-box protein 352;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK109909 (DDBJ%2C Best hit);ORF_evidence=NP_001059221.1 (RefSeq);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-149-G10;Oryzabase=17128;TENOR=Os07t0228400-02;KEGG=Os07t0228400-02
Chr07	irgsp1_rep	five_prime_UTR	7167609	7167698	.	-	.	Parent=Os07t0228400-02
Chr07	irgsp1_rep	CDS	7166718	7167608	.	-	0	Parent=Os07t0228400-02
Chr07	irgsp1_rep	three_prime_UTR	7166253	7166717	.	-	.	Parent=Os07t0228400-02
Chr07	irgsp1_rep	mRNA	7184023	7186977	.	-	.	ID=Os07t0228900-01;Name=Os07t0228900-01;Locus_id=Os07g0228900;Oryzabase Gene Symbol Synonym(s)=OsFbox353%2C Os_F0501;Oryzabase Gene Name Synonym(s)=F-box protein 353;Note=F-box domain%2C Skp2-like domain containing protein.;Transcript_evidence=AK072335 (DDBJ%2C Best hit);ORF_evidence=B9FW94 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023041E05;Oryzabase=17129;TENOR=Os07t0228900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	7186920	7186977	.	-	.	Parent=Os07t0228900-01
Chr07	irgsp1_rep	CDS	7186194	7186919	.	-	0	Parent=Os07t0228900-01
Chr07	irgsp1_rep	three_prime_UTR	7184023	7186193	.	-	.	Parent=Os07t0228900-01
Chr07	irgsp1_rep	mRNA	7198586	7201912	.	-	.	ID=Os07t0229100-01;Name=Os07t0229100-01;Locus_id=Os07g0229100;Oryzabase Gene Symbol Synonym(s)=OsFbox354%2C Os_F0275;Oryzabase Gene Name Synonym(s)=F-box protein 354;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK070112 (DDBJ%2C Best hit);ORF_evidence=B9FW95 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023041O17;Oryzabase=17130;Expression=AK070112;TENOR=Os07t0229100-01;KEGG=Os07t0229100-01
Chr07	irgsp1_rep	five_prime_UTR	7201799	7201912	.	-	.	Parent=Os07t0229100-01
Chr07	irgsp1_rep	CDS	7200578	7201798	.	-	0	Parent=Os07t0229100-01
Chr07	irgsp1_rep	CDS	7199816	7199992	.	-	0	Parent=Os07t0229100-01
Chr07	irgsp1_rep	CDS	7198875	7199192	.	-	0	Parent=Os07t0229100-01
Chr07	irgsp1_rep	three_prime_UTR	7198586	7198874	.	-	.	Parent=Os07t0229100-01
Chr07	irgsp1_rep	mRNA	7206630	7209537	.	-	.	ID=Os07t0229200-01;Name=Os07t0229200-01;Locus_id=Os07g0229200;Oryzabase Gene Symbol Synonym(s)=OsFbox355%2C Os_F0349;Oryzabase Gene Name Synonym(s)=F-box protein 355;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK058412 (DDBJ%2C Best hit);ORF_evidence=B9FW96 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=001-015-C11;Oryzabase=17131;Expression=AK058412;TENOR=Os07t0229200-01;KEGG=Os07t0229200-01
Chr07	irgsp1_rep	five_prime_UTR	7209486	7209537	.	-	.	Parent=Os07t0229200-01
Chr07	irgsp1_rep	CDS	7208547	7209485	.	-	0	Parent=Os07t0229200-01
Chr07	irgsp1_rep	CDS	7207874	7207981	.	-	0	Parent=Os07t0229200-01
Chr07	irgsp1_rep	three_prime_UTR	7207805	7207873	.	-	.	Parent=Os07t0229200-01
Chr07	irgsp1_rep	three_prime_UTR	7206630	7207169	.	-	.	Parent=Os07t0229200-01
Chr07	irgsp1_rep	mRNA	7224593	7228243	.	-	.	ID=Os07t0229700-01;Name=Os07t0229700-01;Locus_id=Os07g0229700;Oryzabase Gene Symbol Synonym(s)=OsTFIIS;Oryzabase Gene Name Synonym(s)=Transcription Elongation Factor II-S;Note=Similar to DNA-directed RNA polymerase I subunit 12 (EC 2.7.7.6) (Nuclear RNA polymerase I small specific subunit Rpa12) (Zinc ribbon domain containing protein 1).;Transcript_evidence=AK103353 (DDBJ%2C Best hit);ORF_evidence=NP_001149284.1 (RefSeq);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Biological Process: transcription elongation%2C DNA-dependent (GO:0006354),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: regulation of transcription from RNA polymerase II promoter (GO:0006357),Biological Process: regulation of transcription elongation%2C DNA-dependent (GO:0032784),Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: translation elongation factor activity (GO:0003746),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C TFIIS-type (IPR001222),Transcription elongation factor S-II%2C central domain (IPR003618),Transcription elongation factor%2C TFIIS (IPR006289),Transcription elongation factor%2C IIS (IPR016492),Transcription factor IIS%2C N-terminal (IPR017923);NIAS_FLcDNA=J033126I22;Oryzabase=15524;Expression=AK103353;TENOR=Os07t0229700-01;KEGG=Os07t0229700-01 (EC:2.7.7.6)
Chr07	irgsp1_rep	five_prime_UTR	7228125	7228243	.	-	.	Parent=Os07t0229700-01
Chr07	irgsp1_rep	CDS	7227927	7228124	.	-	0	Parent=Os07t0229700-01
Chr07	irgsp1_rep	CDS	7224860	7225801	.	-	0	Parent=Os07t0229700-01
Chr07	irgsp1_rep	three_prime_UTR	7224593	7224859	.	-	.	Parent=Os07t0229700-01
Chr07	irgsp1_rep	mRNA	7229170	7232294	.	-	.	ID=Os07t0229800-01;Name=Os07t0229800-01;Locus_id=Os07g0229800;Note=Similar to GLY1%3B glycerol-3-phosphate dehydrogenase (NAD+).;Transcript_evidence=AK065591 (DDBJ%2C Best hit);ORF_evidence=NP_565939.1 (RefSeq);GO=Biological Process: glycerol-3-phosphate metabolic process (GO:0006072),Biological Process: glycerol-3-phosphate catabolic process (GO:0046168),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: cytoplasm (GO:0005737),Cellular Component: glycerol-3-phosphate dehydrogenase complex (GO:0009331),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: glycerol-3-phosphate dehydrogenase [NAD+] activity (GO:0004367),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: NAD binding (GO:0051287);InterPro=Glycerol-3-phosphate dehydrogenase%2C NAD-dependent (IPR006168),Glycerol-3-phosphate dehydrogenase%2C NAD-dependent%2C N-terminal (IPR011128),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013027J04;TENOR=Os07t0229800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	7232287	7232294	.	-	.	Parent=Os07t0229800-01
Chr07	irgsp1_rep	CDS	7231823	7232286	.	-	0	Parent=Os07t0229800-01
Chr07	irgsp1_rep	CDS	7231587	7231692	.	-	1	Parent=Os07t0229800-01
Chr07	irgsp1_rep	CDS	7231457	7231492	.	-	0	Parent=Os07t0229800-01
Chr07	irgsp1_rep	three_prime_UTR	7231296	7231456	.	-	.	Parent=Os07t0229800-01
Chr07	irgsp1_rep	three_prime_UTR	7230980	7231067	.	-	.	Parent=Os07t0229800-01
Chr07	irgsp1_rep	three_prime_UTR	7230613	7230760	.	-	.	Parent=Os07t0229800-01
Chr07	irgsp1_rep	three_prime_UTR	7230370	7230519	.	-	.	Parent=Os07t0229800-01
Chr07	irgsp1_rep	three_prime_UTR	7230135	7230284	.	-	.	Parent=Os07t0229800-01
Chr07	irgsp1_rep	three_prime_UTR	7229170	7229521	.	-	.	Parent=Os07t0229800-01
Chr07	irgsp1_rep	mRNA	7233158	7235197	.	-	.	ID=Os07t0229900-01;Name=Os07t0229900-01;Locus_id=Os07g0229900;Oryzabase Gene Name Synonym(s)=40 S ribosomal protein S12E%2C Ribosomal protein S12;Note=Ribosomal protein S12e domain containing protein.;Transcript_evidence=AK059090 (DDBJ%2C Best hit),AK121720 (DDBJ%2C Best hit);ORF_evidence=B8B7B6 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S12e (IPR000530),Ribosomal protein L7Ae/L30e/S12e/Gadd45 (IPR004038);NIAS_FLcDNA=001-022-B10,J033080B09;Oryzabase=14096;Expression=AK059090;TENOR=Os07t0229900-01;KEGG=Os07t0229900-01
Chr07	irgsp1_rep	five_prime_UTR	7235133	7235197	.	-	.	Parent=Os07t0229900-01
Chr07	irgsp1_rep	five_prime_UTR	7234987	7235040	.	-	.	Parent=Os07t0229900-01
Chr07	irgsp1_rep	CDS	7234982	7234986	.	-	0	Parent=Os07t0229900-01
Chr07	irgsp1_rep	CDS	7233852	7234137	.	-	1	Parent=Os07t0229900-01
Chr07	irgsp1_rep	CDS	7233525	7233590	.	-	0	Parent=Os07t0229900-01
Chr07	irgsp1_rep	CDS	7233373	7233432	.	-	0	Parent=Os07t0229900-01
Chr07	irgsp1_rep	three_prime_UTR	7233158	7233372	.	-	.	Parent=Os07t0229900-01
Chr07	irgsp1_rep	mRNA	7233176	7235187	.	-	.	ID=Os07t0229900-02;Name=Os07t0229900-02;Locus_id=Os07g0229900;Oryzabase Gene Name Synonym(s)=40 S ribosomal protein S12E%2C Ribosomal protein S12;Note=Similar to 40S ribosomal protein S12.;Transcript_evidence=AK071026 (DDBJ%2C Best hit);ORF_evidence=B8B7B6 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S12e (IPR000530),Ribosomal protein L7Ae/L30e/S12e/Gadd45 (IPR004038);NIAS_FLcDNA=J023078K20;Oryzabase=14096;Expression=AK071026;TENOR=Os07t0229900-02;KEGG=Os07t0229900-02
Chr07	irgsp1_rep	five_prime_UTR	7234260	7235187	.	-	.	Parent=Os07t0229900-02
Chr07	irgsp1_rep	CDS	7233762	7234259	.	-	0	Parent=Os07t0229900-02
Chr07	irgsp1_rep	three_prime_UTR	7233176	7233761	.	-	.	Parent=Os07t0229900-02
Chr07	irgsp1_rep	mRNA	7256141	7257814	.	+	.	ID=Os07t0230400-01;Name=Os07t0230400-01;Locus_id=Os07g0230400;Note=Conserved hypothetical protein.;Transcript_evidence=AK243404 (DDBJ%2C Best hit);ORF_evidence=Q7EY37 (UniProt);NIAS_FLcDNA=J100065D04;TENOR=Os07t0230400-01;KEGG=Os07t0230400-01
Chr07	irgsp1_rep	five_prime_UTR	7256141	7256282	.	+	.	Parent=Os07t0230400-01
Chr07	irgsp1_rep	CDS	7256283	7256882	.	+	0	Parent=Os07t0230400-01
Chr07	irgsp1_rep	three_prime_UTR	7256883	7257814	.	+	.	Parent=Os07t0230400-01
Chr07	irgsp1_rep	mRNA	7258734	7260552	.	-	.	ID=Os07t0230500-00;Name=Os07t0230500-00;Locus_id=Os07g0230500;Note=Similar to endo/excinuclease amino terminal domain-containing protein.;Transcript_evidence=AK367093 (DDBJ);ORF_evidence=NP_180594.2 (RefSeq);GO=Biological Process: DNA repair (GO:0006281),Cellular Component: intracellular (GO:0005622),Molecular Function: nuclease activity (GO:0004518);InterPro=Excinuclease ABC%2C C subunit%2C N-terminal (IPR000305);TENOR=Os07t0230500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	7260182	7260552	.	-	0	Parent=Os07t0230500-00
Chr07	irgsp1_rep	CDS	7259933	7260071	.	-	1	Parent=Os07t0230500-00
Chr07	irgsp1_rep	CDS	7259654	7259787	.	-	0	Parent=Os07t0230500-00
Chr07	irgsp1_rep	CDS	7258734	7259538	.	-	1	Parent=Os07t0230500-00
Chr07	irgsp1_rep	mRNA	7268817	7269392	.	+	.	ID=Os07t0230600-00;Name=Os07t0230600-00;Locus_id=Os07g0230600;Note=Hypothetical conserved gene.;Transcript_evidence=EU973378 (DDBJ);ORF_evidence=NP_001175110.1 (RefSeq);TENOR=Os07t0230600-00;KEGG=Os07t0230600-00
Chr07	irgsp1_rep	CDS	7268817	7269392	.	+	0	Parent=Os07t0230600-00
Chr07	irgsp1_rep	mRNA	7273026	7274721	.	-	.	ID=Os07t0230700-01;Name=Os07t0230700-01;Locus_id=Os07g0230700;Note=Protein of unknown function DUF567 family protein.;Transcript_evidence=AK069953 (DDBJ%2C Best hit);ORF_evidence=A3BI01 (UniProt);InterPro=Tubby%2C C-terminal (IPR000007),Protein of unknown function DUF567 (IPR007612);NIAS_FLcDNA=J023037H24;Expression=AK069953;TENOR=Os07t0230700-01;KEGG=Os07t0230700-01
Chr07	irgsp1_rep	five_prime_UTR	7274656	7274721	.	-	.	Parent=Os07t0230700-01
Chr07	irgsp1_rep	CDS	7274383	7274655	.	-	0	Parent=Os07t0230700-01
Chr07	irgsp1_rep	CDS	7273515	7273745	.	-	0	Parent=Os07t0230700-01
Chr07	irgsp1_rep	CDS	7273285	7273425	.	-	0	Parent=Os07t0230700-01
Chr07	irgsp1_rep	three_prime_UTR	7273026	7273284	.	-	.	Parent=Os07t0230700-01
Chr07	irgsp1_rep	mRNA	7301837	7302479	.	+	.	ID=Os07t0231133-00;Name=Os07t0231133-00;Locus_id=Os07g0231133;Note=Conserved hypothetical protein.;Transcript_evidence=AK333893 (DDBJ);ORF_evidence=NP_001060232.2 (RefSeq);TENOR=Os07t0231133-00
Chr07	irgsp1_rep	five_prime_UTR	7301837	7301921	.	+	.	Parent=Os07t0231133-00
Chr07	irgsp1_rep	CDS	7301922	7302194	.	+	0	Parent=Os07t0231133-00
Chr07	irgsp1_rep	three_prime_UTR	7302195	7302479	.	+	.	Parent=Os07t0231133-00
Chr07	irgsp1_rep	mRNA	7310637	7313002	.	+	.	ID=Os07t0231400-01;Name=Os07t0231400-01;Locus_id=Os07g0231400;Oryzabase Gene Symbol Synonym(s)=OsANT1;Oryzabase Gene Name Synonym(s)=aromatic and neutral amino acid transporter 1;Note=Similar to aromatic and neutral amino acid transporter.;Transcript_evidence=AK105808 (DDBJ%2C Best hit);ORF_evidence=XP_002323359.1 (RefSeq);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=001-203-B09;Oryzabase=18515;TENOR=Os07t0231400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	7310637	7310638	.	+	.	Parent=Os07t0231400-01
Chr07	irgsp1_rep	CDS	7310639	7310686	.	+	0	Parent=Os07t0231400-01
Chr07	irgsp1_rep	CDS	7311445	7312089	.	+	0	Parent=Os07t0231400-01
Chr07	irgsp1_rep	CDS	7312359	7312751	.	+	0	Parent=Os07t0231400-01
Chr07	irgsp1_rep	three_prime_UTR	7312752	7313002	.	+	.	Parent=Os07t0231400-01
Chr07	irgsp1_rep	mRNA	7313552	7314685	.	+	.	ID=Os07t0231500-01;Name=Os07t0231500-01;Locus_id=Os07g0231500;Note=Cyclin-related 2 domain containing protein.;Transcript_evidence=AK109283 (DDBJ%2C Best hit);ORF_evidence=B7ERZ0 (UniProt);GO=Biological Process: regulation of cyclin-dependent protein kinase activity (GO:0000079),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin PHO80-like (IPR013922);NIAS_FLcDNA=002-188-B12;Expression=AK109283;TENOR=Os07t0231500-01;KEGG=Os07t0231500-01
Chr07	irgsp1_rep	five_prime_UTR	7313552	7313659	.	+	.	Parent=Os07t0231500-01
Chr07	irgsp1_rep	CDS	7313660	7314406	.	+	0	Parent=Os07t0231500-01
Chr07	irgsp1_rep	three_prime_UTR	7314407	7314685	.	+	.	Parent=Os07t0231500-01
Chr07	irgsp1_rep	mRNA	7317228	7317584	.	+	.	ID=Os07t0231700-00;Name=Os07t0231700-00;Locus_id=Os07g0231700;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001059235.2 (RefSeq);TENOR=Os07t0231700-00;KEGG=Os07t0231700-00
Chr07	irgsp1_rep	CDS	7317228	7317584	.	+	0	Parent=Os07t0231700-00
Chr07	irgsp1_rep	mRNA	7321536	7323450	.	+	.	ID=Os07t0231800-01;Name=Os07t0231800-01;Locus_id=Os07g0231800;Note=Conserved hypothetical protein.;Transcript_evidence=AK066676 (DDBJ%2C Best hit);ORF_evidence=A2X189 (UniProt);NIAS_FLcDNA=J013070B16;Expression=AK066676;TENOR=Os07t0231800-01;KEGG=Os07t0231800-01
Chr07	irgsp1_rep	five_prime_UTR	7321536	7321769	.	+	.	Parent=Os07t0231800-01
Chr07	irgsp1_rep	CDS	7321770	7322614	.	+	0	Parent=Os07t0231800-01
Chr07	irgsp1_rep	CDS	7322689	7323331	.	+	1	Parent=Os07t0231800-01
Chr07	irgsp1_rep	three_prime_UTR	7323332	7323450	.	+	.	Parent=Os07t0231800-01
Chr07	irgsp1_rep	mRNA	7321743	7323788	.	+	.	ID=Os07t0231800-02;Name=Os07t0231800-02;Locus_id=Os07g0231800;Note=Conserved hypothetical protein.;Transcript_evidence=AK119649 (DDBJ%2C Best hit);ORF_evidence=A2X189 (UniProt);NIAS_FLcDNA=002-130-G09;Expression=AK119649;TENOR=Os07t0231800-02;KEGG=Os07t0231800-02
Chr07	irgsp1_rep	five_prime_UTR	7321743	7321769	.	+	.	Parent=Os07t0231800-02
Chr07	irgsp1_rep	CDS	7321770	7322614	.	+	0	Parent=Os07t0231800-02
Chr07	irgsp1_rep	CDS	7322689	7323331	.	+	1	Parent=Os07t0231800-02
Chr07	irgsp1_rep	three_prime_UTR	7323332	7323788	.	+	.	Parent=Os07t0231800-02
Chr07	irgsp1_rep	mRNA	7324275	7329317	.	-	.	ID=Os07t0231900-01;Name=Os07t0231900-01;Locus_id=Os07g0231900;Note=PDZ/DHR/GLGF domain containing protein.;Transcript_evidence=AK105271 (DDBJ%2C Best hit);ORF_evidence=B9FWA3 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein binding (GO:0005515);InterPro=PDZ/DHR/GLGF (IPR001478),Peptidase cysteine/serine%2C trypsin-like (IPR009003);NIAS_FLcDNA=001-115-G02;Expression=AK105271;TENOR=Os07t0231900-01;KEGG=Os07t0231900-01
Chr07	irgsp1_rep	five_prime_UTR	7329184	7329317	.	-	.	Parent=Os07t0231900-01
Chr07	irgsp1_rep	CDS	7328802	7329183	.	-	0	Parent=Os07t0231900-01
Chr07	irgsp1_rep	CDS	7328212	7328346	.	-	2	Parent=Os07t0231900-01
Chr07	irgsp1_rep	CDS	7327991	7328127	.	-	2	Parent=Os07t0231900-01
Chr07	irgsp1_rep	CDS	7326561	7326836	.	-	0	Parent=Os07t0231900-01
Chr07	irgsp1_rep	CDS	7326353	7326483	.	-	0	Parent=Os07t0231900-01
Chr07	irgsp1_rep	CDS	7325513	7325627	.	-	1	Parent=Os07t0231900-01
Chr07	irgsp1_rep	CDS	7325355	7325444	.	-	0	Parent=Os07t0231900-01
Chr07	irgsp1_rep	CDS	7325217	7325288	.	-	0	Parent=Os07t0231900-01
Chr07	irgsp1_rep	CDS	7324846	7324923	.	-	0	Parent=Os07t0231900-01
Chr07	irgsp1_rep	CDS	7324667	7324696	.	-	0	Parent=Os07t0231900-01
Chr07	irgsp1_rep	three_prime_UTR	7324620	7324666	.	-	.	Parent=Os07t0231900-01
Chr07	irgsp1_rep	three_prime_UTR	7324275	7324506	.	-	.	Parent=Os07t0231900-01
Chr07	irgsp1_rep	mRNA	7332804	7334253	.	-	.	ID=Os07t0232100-00;Name=Os07t0232100-00;Locus_id=Os07g0232100;Note=Putative B3 domain-containing protein LOC_Os07g12820.;Transcript_evidence=Q84YL3 (UniProt);ORF_evidence=Q84YL3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);TENOR=Os07t0232100-00
Chr07	irgsp1_rep	CDS	7334197	7334253	.	-	0	Parent=Os07t0232100-00
Chr07	irgsp1_rep	CDS	7333750	7334116	.	-	0	Parent=Os07t0232100-00
Chr07	irgsp1_rep	CDS	7333330	7333491	.	-	2	Parent=Os07t0232100-00
Chr07	irgsp1_rep	CDS	7333053	7333137	.	-	2	Parent=Os07t0232100-00
Chr07	irgsp1_rep	CDS	7332804	7332936	.	-	1	Parent=Os07t0232100-00
Chr07	irgsp1_rep	mRNA	7347805	7351531	.	+	.	ID=Os07t0232200-01;Name=Os07t0232200-01;Locus_id=Os07g0232200;Note=Similar to Flavohemoprotein b5/b5R variant.;Transcript_evidence=AK103406 (DDBJ%2C Best hit);ORF_evidence=B6T383 (UniProt);GO=Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome b5 (IPR001199),CytoChrome b5%2C heme-binding site (IPR018506);NIAS_FLcDNA=J033128D10;Expression=AK103406;TENOR=Os07t0232200-01;KEGG=Os07t0232200-01
Chr07	irgsp1_rep	five_prime_UTR	7347805	7347915	.	+	.	Parent=Os07t0232200-01
Chr07	irgsp1_rep	five_prime_UTR	7348009	7348175	.	+	.	Parent=Os07t0232200-01
Chr07	irgsp1_rep	CDS	7348176	7348214	.	+	0	Parent=Os07t0232200-01
Chr07	irgsp1_rep	CDS	7349130	7349484	.	+	0	Parent=Os07t0232200-01
Chr07	irgsp1_rep	CDS	7350596	7350730	.	+	2	Parent=Os07t0232200-01
Chr07	irgsp1_rep	CDS	7350873	7350923	.	+	2	Parent=Os07t0232200-01
Chr07	irgsp1_rep	CDS	7351207	7351283	.	+	2	Parent=Os07t0232200-01
Chr07	irgsp1_rep	three_prime_UTR	7351284	7351531	.	+	.	Parent=Os07t0232200-01
Chr07	irgsp1_rep	mRNA	7355735	7356567	.	-	.	ID=Os07t0232300-01;Name=Os07t0232300-01;Locus_id=Os07g0232300;Note=Hypothetical protein.;Transcript_evidence=AK110877 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-172-G04;Expression=AK110877;TENOR=Os07t0232300-01;KEGG=Os07t0232300-01
Chr07	irgsp1_rep	five_prime_UTR	7356566	7356567	.	-	.	Parent=Os07t0232300-01
Chr07	irgsp1_rep	CDS	7355963	7356565	.	-	0	Parent=Os07t0232300-01
Chr07	irgsp1_rep	three_prime_UTR	7355735	7355962	.	-	.	Parent=Os07t0232300-01
Chr07	irgsp1_rep	mRNA	7368345	7370021	.	-	.	ID=Os07t0232450-00;Name=Os07t0232450-00;Locus_id=Os07g0232450;Note=Hypothetical protein.;Transcript_evidence=tplb0040j01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0232450-00
Chr07	irgsp1_rep	five_prime_UTR	7369794	7370021	.	-	.	Parent=Os07t0232450-00
Chr07	irgsp1_rep	CDS	7369792	7369793	.	-	0	Parent=Os07t0232450-00
Chr07	irgsp1_rep	CDS	7369478	7369611	.	-	1	Parent=Os07t0232450-00
Chr07	irgsp1_rep	CDS	7369033	7369286	.	-	2	Parent=Os07t0232450-00
Chr07	irgsp1_rep	CDS	7368913	7368945	.	-	0	Parent=Os07t0232450-00
Chr07	irgsp1_rep	three_prime_UTR	7368741	7368912	.	-	.	Parent=Os07t0232450-00
Chr07	irgsp1_rep	three_prime_UTR	7368345	7368483	.	-	.	Parent=Os07t0232450-00
Chr07	irgsp1_rep	mRNA	7379485	7382994	.	+	.	ID=Os07t0232600-01;Name=Os07t0232600-01;Locus_id=Os07g0232600;Note=Non-protein coding transcript.;Transcript_evidence=AK288255 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090015K18;TENOR=Os07t0232600-01
Chr07	irgsp1_rep	exon	7379485	7382994	.	+	.	Parent=Os07t0232600-01
Chr07	irgsp1_rep	mRNA	7394486	7397577	.	+	.	ID=Os07t0232800-00;Name=Os07t0232800-00;Locus_id=Os07g0232800;CGSNL Gene Symbol=ZIP8;CGSNL Gene Name=ZINC TRANSPORTER 8;Oryzabase Gene Symbol Synonym(s)=OsZIP8%2C OsZIP1;Oryzabase Gene Name Synonym(s)=zinc transporter 8%2C Zrt-Irt-like protein 8%2C Zinc-regulated transporter%2C Iron-regulated transporter-like protein 8%2C Zinc and Iron-regulated Protein 8;Note=Similar to Zinc transporter protein ZIP1.;Transcript_evidence=AY327038 (DDBJ%2C Best hit);ORF_evidence=A3BI11-2 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Biological Process: transmembrane transport (GO:0055085),Biological Process: zinc ion transmembrane transport (GO:0071577),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: zinc ion transmembrane transporter activity (GO:0005385),Molecular Function: metal ion transmembrane transporter activity (GO:0046873);InterPro=Zinc/iron permease (IPR003689),Zinc/iron permease%2C fungal/plant (IPR004698);Oryzabase=9989;Expression=AY327038;TENOR=Os07t0232800-00;KEGG=Os07t0232800-00
Chr07	irgsp1_rep	five_prime_UTR	7394486	7394523	.	+	.	Parent=Os07t0232800-00
Chr07	irgsp1_rep	CDS	7394524	7395015	.	+	0	Parent=Os07t0232800-00
Chr07	irgsp1_rep	CDS	7395115	7395240	.	+	0	Parent=Os07t0232800-00
Chr07	irgsp1_rep	CDS	7395917	7396066	.	+	0	Parent=Os07t0232800-00
Chr07	irgsp1_rep	CDS	7397140	7397445	.	+	0	Parent=Os07t0232800-00
Chr07	irgsp1_rep	three_prime_UTR	7397446	7397577	.	+	.	Parent=Os07t0232800-00
Chr07	irgsp1_rep	mRNA	7396993	7397516	.	-	.	ID=Os07t0232850-00;Name=Os07t0232850-00;Locus_id=Os07g0232850;Note=Non-protein coding transcript.;Transcript_evidence=CT836071 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os07t0232850-00
Chr07	irgsp1_rep	exon	7396993	7397516	.	-	.	Parent=Os07t0232850-00
Chr07	irgsp1_rep	mRNA	7405745	7409553	.	-	.	ID=Os07t0232900-01;Name=Os07t0232900-01;Locus_id=Os07g0232900;RAP-DB Gene Symbol Synonym(s)=HMA3%2C OsHMA3%2C OsHMA3a%2C OsHMA3n%2C osHMA3;RAP-DB Gene Name Synonym(s)=HEAVY METAL ATPASE 3%2C heavy metal ATPase 3%2C heavy metal transporter 3%2C heavy metal P-Type ATPase 3;CGSNL Gene Symbol=GCC7;CGSNL Gene Name=GRAIN CD CONCENTRATION ON CHROMOSOME 7;Oryzabase Gene Symbol Synonym(s)=HMA3%2C OsHMA3%2C OsHMA3a%2C OsHMA3n%2C osHMA3%2C OsHMP34%2C HMP34;Oryzabase Gene Name Synonym(s)=heavy metal ATPase 3%2C heavy metal transporter 3%2C heavy metal P-Type ATPase 3%2C heavy metal P1B-ATPase 3%2C grain Cd concentration on Chromosome 7%2C Heavy metal-associated protein 34;Note=Heavy metal-transporting P1B-ATPase%2C Root-to-shoot cadmium (Cd) translocation;Transcript_evidence=AB559519 (Genbank),AB557931 (Genbank);ORF_evidence=Q8H384 (UniProt);GO=Biological Process: ATP biosynthetic process (GO:0006754),Biological Process: cation transport (GO:0006812),Biological Process: metabolic process (GO:0008152),Biological Process: metal ion transport (GO:0030001),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides (GO:0016818),Molecular Function: metal ion binding (GO:0046872),Molecular Function: metal ion transmembrane transporter activity (GO:0046873);InterPro=ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),Haloacid dehalogenase-like hydrolase (IPR005834),Heavy metal-associated domain%2C HMA (IPR006121),ATPase%2C P-type%2C heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating (IPR006404),ATPase%2C P-type%2C heavy metal translocating (IPR006416),ATPase%2C P-type%2C ATPase-associated domain (IPR008250),ATPase%2C P-type phosphorylation site (IPR018303),HAD-like domain (IPR023214),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C  P-type%2C cytoplasmic transduction domain A (IPR023300);Manual Curation=January 6%2C 2011;Literature_PMID=20840506,20823253;Oryzabase=9428;TENOR=Os07t0232900-00
Chr07	irgsp1_rep	CDS	7409265	7409553	.	-	0	Parent=Os07t0232900-01
Chr07	irgsp1_rep	CDS	7408807	7409162	.	-	2	Parent=Os07t0232900-01
Chr07	irgsp1_rep	CDS	7408463	7408718	.	-	0	Parent=Os07t0232900-01
Chr07	irgsp1_rep	CDS	7408112	7408249	.	-	2	Parent=Os07t0232900-01
Chr07	irgsp1_rep	CDS	7407685	7408015	.	-	2	Parent=Os07t0232900-01
Chr07	irgsp1_rep	CDS	7407296	7407501	.	-	1	Parent=Os07t0232900-01
Chr07	irgsp1_rep	CDS	7405745	7407183	.	-	2	Parent=Os07t0232900-01
Chr07	irgsp1_rep	mRNA	7406775	7407143	.	+	.	ID=Os07t0232950-00;Name=Os07t0232950-00;Locus_id=Os07g0232950;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os07t0232950-00
Chr07	irgsp1_rep	CDS	7406775	7407143	.	+	0	Parent=Os07t0232950-00
Chr07	irgsp1_rep	mRNA	7407308	7408943	.	+	.	ID=Os07t0233000-00;Name=Os07t0233000-00;Locus_id=Os07g0233000;Note=Hypothetical gene.;Transcript_evidence=BT085432 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0233000-00;KEGG=Os07t0233000-00
Chr07	irgsp1_rep	five_prime_UTR	7407308	7407499	.	+	.	Parent=Os07t0233000-00
Chr07	irgsp1_rep	five_prime_UTR	7407683	7407741	.	+	.	Parent=Os07t0233000-00
Chr07	irgsp1_rep	CDS	7407742	7408012	.	+	0	Parent=Os07t0233000-00
Chr07	irgsp1_rep	CDS	7408109	7408122	.	+	2	Parent=Os07t0233000-00
Chr07	irgsp1_rep	three_prime_UTR	7408123	7408227	.	+	.	Parent=Os07t0233000-00
Chr07	irgsp1_rep	three_prime_UTR	7408437	7408734	.	+	.	Parent=Os07t0233000-00
Chr07	irgsp1_rep	three_prime_UTR	7408822	7408943	.	+	.	Parent=Os07t0233000-00
Chr07	irgsp1_rep	mRNA	7411223	7415421	.	+	.	ID=Os07t0233200-01;Name=Os07t0233200-01;Locus_id=Os07g0233200;Note=Hypothetical gene.;Transcript_evidence=AK288428 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090032O10;TENOR=Os07t0233200-01;KEGG=Os07t0233200-01
Chr07	irgsp1_rep	five_prime_UTR	7411223	7412901	.	+	.	Parent=Os07t0233200-01
Chr07	irgsp1_rep	CDS	7412902	7413459	.	+	0	Parent=Os07t0233200-01
Chr07	irgsp1_rep	three_prime_UTR	7413460	7415421	.	+	.	Parent=Os07t0233200-01
Chr07	irgsp1_rep	mRNA	7414575	7418059	.	-	.	ID=Os07t0233300-01;Name=Os07t0233300-01;Locus_id=Os07g0233300;Note=Similar to Nucleic acid binding protein-like.;Transcript_evidence=AK073637 (DDBJ%2C Best hit);ORF_evidence=NP_001150212.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-type%2C conserved site (IPR019786),Zinc finger%2C PHD-finger (IPR019787),Protein of unknown function DUF3594 (IPR021998);NIAS_FLcDNA=J033048B22;Expression=AK073637;TENOR=Os07t0233300-01;KEGG=Os07t0233300-01
Chr07	irgsp1_rep	five_prime_UTR	7417989	7418059	.	-	.	Parent=Os07t0233300-01
Chr07	irgsp1_rep	CDS	7417886	7417988	.	-	0	Parent=Os07t0233300-01
Chr07	irgsp1_rep	CDS	7417735	7417767	.	-	2	Parent=Os07t0233300-01
Chr07	irgsp1_rep	CDS	7417415	7417637	.	-	2	Parent=Os07t0233300-01
Chr07	irgsp1_rep	CDS	7415275	7415398	.	-	1	Parent=Os07t0233300-01
Chr07	irgsp1_rep	CDS	7414923	7415174	.	-	0	Parent=Os07t0233300-01
Chr07	irgsp1_rep	three_prime_UTR	7414575	7414922	.	-	.	Parent=Os07t0233300-01
Chr07	irgsp1_rep	mRNA	7415667	7418055	.	-	.	ID=Os07t0233300-02;Name=Os07t0233300-02;Locus_id=Os07g0233300;Note=Similar to PHD finger protein.;Transcript_evidence=AK111142 (DDBJ%2C Best hit);ORF_evidence=NP_001150212.1 (RefSeq);InterPro=Protein of unknown function DUF3594 (IPR021998);NIAS_FLcDNA=002-176-E03;Expression=AK111142;TENOR=Os07t0233300-02;KEGG=Os07t0233300-02
Chr07	irgsp1_rep	five_prime_UTR	7417989	7418055	.	-	.	Parent=Os07t0233300-02
Chr07	irgsp1_rep	CDS	7417886	7417988	.	-	0	Parent=Os07t0233300-02
Chr07	irgsp1_rep	CDS	7417735	7417767	.	-	2	Parent=Os07t0233300-02
Chr07	irgsp1_rep	CDS	7417415	7417637	.	-	2	Parent=Os07t0233300-02
Chr07	irgsp1_rep	CDS	7415757	7415919	.	-	1	Parent=Os07t0233300-02
Chr07	irgsp1_rep	three_prime_UTR	7415667	7415756	.	-	.	Parent=Os07t0233300-02
Chr07	irgsp1_rep	mRNA	7414575	7415165	.	-	.	ID=Os07t0233300-03;Name=Os07t0233300-03;Locus_id=Os07g0233300;Note=Similar to cDNA clone:J033048B22%2C full insert sequence.;Transcript_evidence=AK063803 (DDBJ%2C Best hit);ORF_evidence=B7EMG8 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-type%2C conserved site (IPR019786),Zinc finger%2C PHD-finger (IPR019787);NIAS_FLcDNA=001-121-F12;Expression=AK063803;TENOR=Os07t0233300-03;KEGG=Os07t0233300-03
Chr07	irgsp1_rep	CDS	7414923	7415165	.	-	0	Parent=Os07t0233300-03
Chr07	irgsp1_rep	three_prime_UTR	7414575	7414922	.	-	.	Parent=Os07t0233300-03
Chr07	irgsp1_rep	mRNA	7500690	7503900	.	-	.	ID=Os07t0235200-01;Name=Os07t0235200-01;Locus_id=Os07g0235200;Note=Protein of unknown function DUF296 domain containing protein.;Transcript_evidence=AK120395 (DDBJ%2C Best hit);ORF_evidence=NP_001151240.1 (RefSeq);InterPro=Domain of unknown function DUF296 (IPR005175),Predicted AT-hook DNA-binding (IPR014476);NIAS_FLcDNA=J013075G01;Expression=AK120395;TENOR=Os07t0235200-01;KEGG=Os07t0235200-01
Chr07	irgsp1_rep	five_prime_UTR	7502460	7503900	.	-	.	Parent=Os07t0235200-01
Chr07	irgsp1_rep	CDS	7501890	7502459	.	-	0	Parent=Os07t0235200-01
Chr07	irgsp1_rep	three_prime_UTR	7500690	7501889	.	-	.	Parent=Os07t0235200-01
Chr07	irgsp1_rep	mRNA	7541884	7542879	.	-	.	ID=Os07t0235700-01;Name=Os07t0235700-01;Locus_id=Os07g0235700;Note=Similar to cDNA clone:J023006M12%2C full insert sequence.;Transcript_evidence=AK106981 (DDBJ%2C Best hit);ORF_evidence=B7EFX2 (UniProt);NIAS_FLcDNA=002-119-H08;TENOR=Os07t0235700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	7542841	7542879	.	-	.	Parent=Os07t0235700-01
Chr07	irgsp1_rep	CDS	7542496	7542840	.	-	0	Parent=Os07t0235700-01
Chr07	irgsp1_rep	three_prime_UTR	7541884	7542495	.	-	.	Parent=Os07t0235700-01
Chr07	irgsp1_rep	mRNA	7545547	7549914	.	+	.	ID=Os07t0235800-01;Name=Os07t0235800-01;Locus_id=Os07g0235800;RAP-DB Gene Symbol Synonym(s)=SNB%2C AP2/EREBP73%2C OsSNB;RAP-DB Gene Name Synonym(s)=SUPERNUMERARY BRACT%2C APETALA2/ethylene-responsive element binding protein 73;CGSNL Gene Symbol=SNB;CGSNL Gene Name=SUPERNUMERARY BRACT GENE;Oryzabase Gene Symbol Synonym(s)=AP2/EREBP#073%2C AP2/EREBP73%2C AP2-3%2C SSH1%2C OsSSH1%2C OsSNB%2C DLN181%2C DLN181a%2C DLN181b%2C OsDLN181%2C OsDLN181a%2C OsDLN181b%2C SUI4%2C OsSUI4%2C SUI4/SNB;Oryzabase Gene Name Synonym(s)=Supernumerary Bract gene%2C Supernumerary Bract%2C SUPERNUMERARY BRACT%2C supernumerary bract%2C transcription factor%3B SNB%2C APETALA2/ethylene-responsive element binding protein 73%2C APETALA2-3%2C suppression of shattering1%2C DLN repressor 181%2C DLN motif protein 181%2C shortened uppermost internode 4;Note=AP2 domain containing transcription factor%2C Control of inflorescence architecture%2C Floral meristem establishment%2C Regulation of grain size;Transcript_evidence=DQ374663 (Dongjin),AK111874;ORF_evidence=Q8H443;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=DNA-binding domain (IPR016177),AP2/ERF domain (IPR001471);Manual Curation=July 29%2C 2019;Literature_PMID=31150378,22003982,17144896;Oryzabase=6443;TENOR=Os07t0235800-01
Chr07	irgsp1_rep	five_prime_UTR	7545547	7545752	.	+	.	Parent=Os07t0235800-01
Chr07	irgsp1_rep	CDS	7545753	7546171	.	+	0	Parent=Os07t0235800-01
Chr07	irgsp1_rep	CDS	7546274	7546299	.	+	1	Parent=Os07t0235800-01
Chr07	irgsp1_rep	CDS	7546420	7546450	.	+	2	Parent=Os07t0235800-01
Chr07	irgsp1_rep	CDS	7546534	7546621	.	+	1	Parent=Os07t0235800-01
Chr07	irgsp1_rep	CDS	7546733	7546878	.	+	0	Parent=Os07t0235800-01
Chr07	irgsp1_rep	CDS	7547485	7547529	.	+	1	Parent=Os07t0235800-01
Chr07	irgsp1_rep	CDS	7547620	7547723	.	+	1	Parent=Os07t0235800-01
Chr07	irgsp1_rep	CDS	7547820	7547956	.	+	2	Parent=Os07t0235800-01
Chr07	irgsp1_rep	CDS	7548397	7548498	.	+	0	Parent=Os07t0235800-01
Chr07	irgsp1_rep	CDS	7549219	7549431	.	+	0	Parent=Os07t0235800-01
Chr07	irgsp1_rep	three_prime_UTR	7549432	7549914	.	+	.	Parent=Os07t0235800-01
Chr07	irgsp1_rep	mRNA	7581082	7583491	.	-	.	ID=Os07t0236200-01;Name=Os07t0236200-01;Locus_id=Os07g0236200;Note=Hypothetical conserved gene.;Transcript_evidence=AK065983 (DDBJ%2C Best hit);ORF_evidence=B9FWB3 (UniProt);NIAS_FLcDNA=J013044K02;Expression=AK065983;TENOR=Os07t0236200-01;KEGG=Os07t0236200-01
Chr07	irgsp1_rep	five_prime_UTR	7583410	7583491	.	-	.	Parent=Os07t0236200-01
Chr07	irgsp1_rep	five_prime_UTR	7582858	7583047	.	-	.	Parent=Os07t0236200-01
Chr07	irgsp1_rep	five_prime_UTR	7582558	7582633	.	-	.	Parent=Os07t0236200-01
Chr07	irgsp1_rep	five_prime_UTR	7581374	7582256	.	-	.	Parent=Os07t0236200-01
Chr07	irgsp1_rep	CDS	7581176	7581373	.	-	0	Parent=Os07t0236200-01
Chr07	irgsp1_rep	three_prime_UTR	7581082	7581175	.	-	.	Parent=Os07t0236200-01
Chr07	irgsp1_rep	mRNA	7582826	7583587	.	+	.	ID=Os07t0236300-01;Name=Os07t0236300-01;Locus_id=Os07g0236300;Note=Hypothetical gene.;Transcript_evidence=AK109587 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-137-B06;Expression=AK109587;TENOR=Os07t0236300-01;KEGG=Os07t0236300-01
Chr07	irgsp1_rep	CDS	7582826	7583038	.	+	0	Parent=Os07t0236300-01
Chr07	irgsp1_rep	three_prime_UTR	7583039	7583587	.	+	.	Parent=Os07t0236300-01
Chr07	irgsp1_rep	mRNA	7604107	7605638	.	-	.	ID=Os07t0236700-01;Name=Os07t0236700-01;Locus_id=Os07g0236700;CGSNL Gene Symbol=DOF21;CGSNL Gene Name=DNA BINDING WITH ONE FINGER 21;Oryzabase Gene Symbol Synonym(s)=OsDof21%2C Dof21%2C OsDof-21%2C OsCDF2%2C CDF2;Oryzabase Gene Name Synonym(s)=Dof zinc factor 21%2C Dof transcription factor 21%2C CYCLING DOF FACTOR 2;Note=Zinc finger%2C Dof-type domain containing protein.;Transcript_evidence=AK068542 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C Dof-type (IPR003851);NIAS_FLcDNA=J013155H18;Oryzabase=8811;TENOR=Os07t0236700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	7605631	7605638	.	-	.	Parent=Os07t0236700-01
Chr07	irgsp1_rep	CDS	7604569	7605630	.	-	0	Parent=Os07t0236700-01
Chr07	irgsp1_rep	three_prime_UTR	7604107	7604568	.	-	.	Parent=Os07t0236700-01
Chr07	irgsp1_rep	mRNA	7621498	7626660	.	+	.	ID=Os07t0236800-01;Name=Os07t0236800-01;Locus_id=Os07g0236800;Note=Snf7 family protein.;Transcript_evidence=AK071087 (DDBJ%2C Best hit);ORF_evidence=B6TJP8 (UniProt);GO=Biological Process: protein transport (GO:0015031);InterPro=Snf7 (IPR005024);NIAS_FLcDNA=J023078G13;Expression=AK071087;TENOR=Os07t0236800-01;KEGG=Os07t0236800-01
Chr07	irgsp1_rep	five_prime_UTR	7621498	7621656	.	+	.	Parent=Os07t0236800-01
Chr07	irgsp1_rep	CDS	7621657	7621693	.	+	0	Parent=Os07t0236800-01
Chr07	irgsp1_rep	CDS	7623064	7623194	.	+	2	Parent=Os07t0236800-01
Chr07	irgsp1_rep	CDS	7624851	7624955	.	+	0	Parent=Os07t0236800-01
Chr07	irgsp1_rep	CDS	7625492	7625755	.	+	0	Parent=Os07t0236800-01
Chr07	irgsp1_rep	CDS	7626318	7626458	.	+	0	Parent=Os07t0236800-01
Chr07	irgsp1_rep	three_prime_UTR	7626459	7626660	.	+	.	Parent=Os07t0236800-01
Chr07	irgsp1_rep	mRNA	7627634	7634860	.	-	.	ID=Os07t0237100-00;Name=Os07t0237100-00;Locus_id=Os07g0237100;Note=RNA recognition motif domain domain containing protein.;Transcript_evidence=AK374902 (DDBJ);ORF_evidence=Q7XHQ6 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);TENOR=Os07t0237100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	7634561	7634860	.	-	0	Parent=Os07t0237100-00
Chr07	irgsp1_rep	CDS	7634276	7634464	.	-	0	Parent=Os07t0237100-00
Chr07	irgsp1_rep	CDS	7632634	7632732	.	-	0	Parent=Os07t0237100-00
Chr07	irgsp1_rep	CDS	7632364	7632548	.	-	0	Parent=Os07t0237100-00
Chr07	irgsp1_rep	CDS	7627634	7627883	.	-	1	Parent=Os07t0237100-00
Chr07	irgsp1_rep	mRNA	7636905	7637471	.	-	.	ID=Os07t0237200-00;Name=Os07t0237200-00;Locus_id=Os07g0237200;CGSNL Gene Symbol=RALF23;CGSNL Gene Name=RAPID ALKALIZATION FACTOR 23;Oryzabase Gene Symbol Synonym(s)=OsRALF-23%2C OsRALF23%2C RALF-23;Oryzabase Gene Name Synonym(s)=Rapid alkalization factor 23;Note=Hypothetical conserved gene.;Transcript_evidence=CT836061 (DDBJ%2C Best hit);ORF_evidence=B9FWB7 (UniProt);InterPro=Rapid ALkalinization Factor (IPR008801);Oryzabase=21126;TENOR=Os07t0237200-00;KEGG=Os07t0237200-00
Chr07	irgsp1_rep	five_prime_UTR	7637413	7637471	.	-	.	Parent=Os07t0237200-00
Chr07	irgsp1_rep	CDS	7637173	7637412	.	-	0	Parent=Os07t0237200-00
Chr07	irgsp1_rep	three_prime_UTR	7636905	7637172	.	-	.	Parent=Os07t0237200-00
Chr07	irgsp1_rep	mRNA	7666323	7667386	.	-	.	ID=Os07t0237700-01;Name=Os07t0237700-01;Locus_id=Os07g0237700;Note=Conserved hypothetical protein.;Transcript_evidence=AK062400 (DDBJ%2C Best hit);ORF_evidence=Q8LGY7 (UniProt);NIAS_FLcDNA=001-102-E01;Expression=AK062400;TENOR=Os07t0237700-01;KEGG=Os07t0237700-01
Chr07	irgsp1_rep	five_prime_UTR	7667324	7667386	.	-	.	Parent=Os07t0237700-01
Chr07	irgsp1_rep	CDS	7667306	7667323	.	-	0	Parent=Os07t0237700-01
Chr07	irgsp1_rep	CDS	7666634	7666837	.	-	0	Parent=Os07t0237700-01
Chr07	irgsp1_rep	three_prime_UTR	7666323	7666633	.	-	.	Parent=Os07t0237700-01
Chr07	irgsp1_rep	mRNA	7668386	7668700	.	-	.	ID=Os07t0237900-00;Name=Os07t0237900-00;Locus_id=Os07g0237900;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001059253.1 (RefSeq);TENOR=Os07t0237900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	7668386	7668700	.	-	0	Parent=Os07t0237900-00
Chr07	irgsp1_rep	mRNA	7708310	7708918	.	-	.	ID=Os07t0238500-01;Name=Os07t0238500-01;Locus_id=Os07g0238500;CGSNL Gene Symbol=RALF25;CGSNL Gene Name=RAPID ALKALIZATION FACTOR 25;Oryzabase Gene Symbol Synonym(s)=OsRALF-25%2C OsRALF25%2C RALF-25;Oryzabase Gene Name Synonym(s)=Rapid alkalization factor 25;Note=Rapid ALkalinization Factor domain containing protein.;Transcript_evidence=AK106977 (DDBJ%2C Best hit);ORF_evidence=A2YJR0 (UniProt);InterPro=Rapid ALkalinization Factor (IPR008801);NIAS_FLcDNA=002-119-H03;Oryzabase=21128;Expression=AK106977;TENOR=Os07t0238500-01;KEGG=Os07t0238500-01
Chr07	irgsp1_rep	five_prime_UTR	7708816	7708918	.	-	.	Parent=Os07t0238500-01
Chr07	irgsp1_rep	CDS	7708591	7708815	.	-	0	Parent=Os07t0238500-01
Chr07	irgsp1_rep	three_prime_UTR	7708310	7708590	.	-	.	Parent=Os07t0238500-01
Chr07	irgsp1_rep	mRNA	7710827	7711063	.	-	.	ID=Os07t0238600-00;Name=Os07t0238600-00;Locus_id=Os07g0238600;CGSNL Gene Symbol=RALF26;CGSNL Gene Name=RAPID ALKALIZATION FACTOR 26;Oryzabase Gene Symbol Synonym(s)=OsRALF-26%2C OsRALF26%2C RALF-26;Oryzabase Gene Name Synonym(s)=Rapid alkalization factor 26;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FWB9 (UniProt);InterPro=Rapid ALkalinization Factor (IPR008801);Oryzabase=21129;TENOR=Os07t0238600-00;KEGG=Os07t0238600-00
Chr07	irgsp1_rep	CDS	7710827	7711063	.	-	0	Parent=Os07t0238600-00
Chr07	irgsp1_rep	mRNA	7713453	7720559	.	+	.	ID=Os07t0238700-01;Name=Os07t0238700-01;Locus_id=Os07g0238700;Note=Similar to Glutamate dehydrogenase (EC 1.4.1.3) (GDH).;Transcript_evidence=AK101492 (DDBJ%2C Best hit);ORF_evidence=NP_175851.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: exonuclease activity (GO:0004527);InterPro=Putative 5-3 exonuclease (IPR004859);NIAS_FLcDNA=J033042P14;Expression=AK101492;TENOR=Os07t0238700-01;KEGG=Os07t0238700-01 (EC:1.4.1.3%2C EC:3.1.13.-)
Chr07	irgsp1_rep	five_prime_UTR	7713453	7713908	.	+	.	Parent=Os07t0238700-01
Chr07	irgsp1_rep	five_prime_UTR	7714267	7714351	.	+	.	Parent=Os07t0238700-01
Chr07	irgsp1_rep	five_prime_UTR	7714427	7714518	.	+	.	Parent=Os07t0238700-01
Chr07	irgsp1_rep	five_prime_UTR	7715654	7717780	.	+	.	Parent=Os07t0238700-01
Chr07	irgsp1_rep	CDS	7717781	7718108	.	+	0	Parent=Os07t0238700-01
Chr07	irgsp1_rep	CDS	7718260	7718390	.	+	2	Parent=Os07t0238700-01
Chr07	irgsp1_rep	CDS	7718574	7718663	.	+	0	Parent=Os07t0238700-01
Chr07	irgsp1_rep	three_prime_UTR	7718664	7718689	.	+	.	Parent=Os07t0238700-01
Chr07	irgsp1_rep	three_prime_UTR	7719046	7719093	.	+	.	Parent=Os07t0238700-01
Chr07	irgsp1_rep	three_prime_UTR	7719530	7719591	.	+	.	Parent=Os07t0238700-01
Chr07	irgsp1_rep	three_prime_UTR	7720268	7720559	.	+	.	Parent=Os07t0238700-01
Chr07	irgsp1_rep	mRNA	7717532	7720488	.	+	.	ID=Os07t0238700-02;Name=Os07t0238700-02;Locus_id=Os07g0238700;Note=Similar to Glutamate dehydrogenase (EC 1.4.1.3) (GDH).;Transcript_evidence=AK067680 (DDBJ%2C Best hit);ORF_evidence=NP_175851.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: exonuclease activity (GO:0004527);InterPro=Putative 5-3 exonuclease (IPR004859);NIAS_FLcDNA=J013114K24;Expression=AK067680;TENOR=Os07t0238700-02;KEGG=Os07t0238700-02 (EC:1.4.1.3%2C EC:3.1.13.-)
Chr07	irgsp1_rep	five_prime_UTR	7717532	7717780	.	+	.	Parent=Os07t0238700-02
Chr07	irgsp1_rep	CDS	7717781	7718108	.	+	0	Parent=Os07t0238700-02
Chr07	irgsp1_rep	CDS	7718260	7718390	.	+	2	Parent=Os07t0238700-02
Chr07	irgsp1_rep	CDS	7718574	7718663	.	+	0	Parent=Os07t0238700-02
Chr07	irgsp1_rep	three_prime_UTR	7718664	7718689	.	+	.	Parent=Os07t0238700-02
Chr07	irgsp1_rep	three_prime_UTR	7719046	7719093	.	+	.	Parent=Os07t0238700-02
Chr07	irgsp1_rep	three_prime_UTR	7719530	7720488	.	+	.	Parent=Os07t0238700-02
Chr07	irgsp1_rep	mRNA	7721180	7723813	.	+	.	ID=Os07t0238800-01;Name=Os07t0238800-01;Locus_id=Os07g0238800;Note=Protein of unknown function DUF1723 domain containing protein.;Transcript_evidence=AK106355 (DDBJ%2C Best hit);ORF_evidence=B8BKS4 (UniProt);InterPro=Aminotransferase-like%2C plant mobile domain (IPR019557);NIAS_FLcDNA=002-102-A05;Expression=AK106355;TENOR=Os07t0238800-01;KEGG=Os07t0238800-01
Chr07	irgsp1_rep	five_prime_UTR	7721180	7721587	.	+	.	Parent=Os07t0238800-01
Chr07	irgsp1_rep	CDS	7721588	7721665	.	+	0	Parent=Os07t0238800-01
Chr07	irgsp1_rep	CDS	7721765	7722608	.	+	0	Parent=Os07t0238800-01
Chr07	irgsp1_rep	CDS	7722701	7722762	.	+	2	Parent=Os07t0238800-01
Chr07	irgsp1_rep	three_prime_UTR	7722763	7723221	.	+	.	Parent=Os07t0238800-01
Chr07	irgsp1_rep	three_prime_UTR	7723306	7723813	.	+	.	Parent=Os07t0238800-01
Chr07	irgsp1_rep	mRNA	7729232	7731802	.	-	.	ID=Os07t0239000-00;Name=Os07t0239000-00;Locus_id=Os07g0239000;Note=Protein of unknown function DUF3615 domain containing protein.;Transcript_evidence=AK368776 (DDBJ);ORF_evidence=Q7XHQ0 (UniProt);InterPro=Protein of unknown function DUF3615 (IPR022059);TENOR=Os07t0239000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	7731628	7731802	.	-	0	Parent=Os07t0239000-00
Chr07	irgsp1_rep	CDS	7730806	7730870	.	-	2	Parent=Os07t0239000-00
Chr07	irgsp1_rep	CDS	7729766	7729930	.	-	0	Parent=Os07t0239000-00
Chr07	irgsp1_rep	CDS	7729268	7729393	.	-	0	Parent=Os07t0239000-00
Chr07	irgsp1_rep	three_prime_UTR	7729232	7729267	.	-	.	Parent=Os07t0239000-00
Chr07	irgsp1_rep	mRNA	7739116	7742079	.	-	.	ID=Os07t0239200-01;Name=Os07t0239200-01;Locus_id=Os07g0239200;Note=Conserved hypothetical protein.;Transcript_evidence=AK110962 (DDBJ%2C Best hit);ORF_evidence=A3BI43 (UniProt);NIAS_FLcDNA=002-174-B01;TENOR=Os07t0239200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	7742078	7742079	.	-	.	Parent=Os07t0239200-01
Chr07	irgsp1_rep	CDS	7741550	7742077	.	-	0	Parent=Os07t0239200-01
Chr07	irgsp1_rep	CDS	7740128	7740275	.	-	0	Parent=Os07t0239200-01
Chr07	irgsp1_rep	CDS	7739309	7740039	.	-	2	Parent=Os07t0239200-01
Chr07	irgsp1_rep	three_prime_UTR	7739116	7739308	.	-	.	Parent=Os07t0239200-01
Chr07	irgsp1_rep	mRNA	7742969	7746758	.	-	.	ID=Os07t0239400-01;Name=Os07t0239400-01;Locus_id=Os07g0239400;Oryzabase Gene Symbol Synonym(s)=OsRab8A3;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab8A3;Note=Similar to Ethylene-responsive small GTP-binding protein.;Transcript_evidence=AK068609 (DDBJ%2C Best hit);ORF_evidence=B4FB55 (UniProt);GO=Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225);NIAS_FLcDNA=J013156E05;Oryzabase=11093;Expression=AK068609;TENOR=Os07t0239400-01;KEGG=Os07t0239400-01
Chr07	irgsp1_rep	five_prime_UTR	7746492	7746758	.	-	.	Parent=Os07t0239400-01
Chr07	irgsp1_rep	CDS	7746419	7746491	.	-	0	Parent=Os07t0239400-01
Chr07	irgsp1_rep	CDS	7744709	7744781	.	-	2	Parent=Os07t0239400-01
Chr07	irgsp1_rep	CDS	7744505	7744605	.	-	1	Parent=Os07t0239400-01
Chr07	irgsp1_rep	CDS	7744348	7744413	.	-	2	Parent=Os07t0239400-01
Chr07	irgsp1_rep	CDS	7744170	7744267	.	-	2	Parent=Os07t0239400-01
Chr07	irgsp1_rep	CDS	7743747	7743809	.	-	0	Parent=Os07t0239400-01
Chr07	irgsp1_rep	CDS	7743539	7743631	.	-	0	Parent=Os07t0239400-01
Chr07	irgsp1_rep	CDS	7743380	7743460	.	-	0	Parent=Os07t0239400-01
Chr07	irgsp1_rep	three_prime_UTR	7742969	7743379	.	-	.	Parent=Os07t0239400-01
Chr07	irgsp1_rep	mRNA	7749266	7751735	.	-	.	ID=Os07t0239500-01;Name=Os07t0239500-01;Locus_id=Os07g0239500;Note=Conserved hypothetical protein.;Transcript_evidence=AK103880 (DDBJ%2C Best hit);ORF_evidence=B8B4T7 (UniProt);NIAS_FLcDNA=J033149N22;Expression=AK103880;TENOR=Os07t0239500-01;KEGG=Os07t0239500-01
Chr07	irgsp1_rep	five_prime_UTR	7751533	7751735	.	-	.	Parent=Os07t0239500-01
Chr07	irgsp1_rep	five_prime_UTR	7749702	7749712	.	-	.	Parent=Os07t0239500-01
Chr07	irgsp1_rep	CDS	7749537	7749701	.	-	0	Parent=Os07t0239500-01
Chr07	irgsp1_rep	three_prime_UTR	7749266	7749536	.	-	.	Parent=Os07t0239500-01
Chr07	irgsp1_rep	mRNA	7753947	7757879	.	-	.	ID=Os07t0239600-01;Name=Os07t0239600-01;Locus_id=Os07g0239600;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK103504 (DDBJ%2C Best hit);ORF_evidence=B9FWC4 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033131D01;Expression=AK103504;TENOR=Os07t0239600-01;KEGG=Os07t0239600-01
Chr07	irgsp1_rep	five_prime_UTR	7757709	7757879	.	-	.	Parent=Os07t0239600-01
Chr07	irgsp1_rep	CDS	7755546	7757708	.	-	0	Parent=Os07t0239600-01
Chr07	irgsp1_rep	three_prime_UTR	7755054	7755545	.	-	.	Parent=Os07t0239600-01
Chr07	irgsp1_rep	three_prime_UTR	7754434	7754966	.	-	.	Parent=Os07t0239600-01
Chr07	irgsp1_rep	three_prime_UTR	7753947	7754341	.	-	.	Parent=Os07t0239600-01
Chr07	irgsp1_rep	mRNA	7755542	7757904	.	+	.	ID=Os07t0239667-00;Name=Os07t0239667-00;Locus_id=Os07g0239667;Note=Hypothetical protein.;Transcript_evidence=tplb0021n11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0239667-00
Chr07	irgsp1_rep	five_prime_UTR	7755542	7756467	.	+	.	Parent=Os07t0239667-00
Chr07	irgsp1_rep	CDS	7756468	7756769	.	+	0	Parent=Os07t0239667-00
Chr07	irgsp1_rep	CDS	7757084	7757382	.	+	1	Parent=Os07t0239667-00
Chr07	irgsp1_rep	CDS	7757645	7757904	.	+	2	Parent=Os07t0239667-00
Chr07	irgsp1_rep	mRNA	7786781	7788818	.	+	.	ID=Os07t0240200-01;Name=Os07t0240200-01;Locus_id=Os07g0240200;Note=Similar to Beta-1%2C3 glucanase precursor (EC 3.2.1.39).;Transcript_evidence=AK068978 (DDBJ%2C Best hit);ORF_evidence=NP_001151227.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J023003K14;Oryzabase=22766;Expression=AK068978;TENOR=Os07t0240200-01;KEGG=Os07t0240200-01 (EC:3.2.1.39)
Chr07	irgsp1_rep	five_prime_UTR	7786781	7786816	.	+	.	Parent=Os07t0240200-01
Chr07	irgsp1_rep	CDS	7786817	7787863	.	+	0	Parent=Os07t0240200-01
Chr07	irgsp1_rep	CDS	7787936	7788172	.	+	0	Parent=Os07t0240200-01
Chr07	irgsp1_rep	CDS	7788299	7788385	.	+	0	Parent=Os07t0240200-01
Chr07	irgsp1_rep	CDS	7788629	7788763	.	+	0	Parent=Os07t0240200-01
Chr07	irgsp1_rep	three_prime_UTR	7788764	7788818	.	+	.	Parent=Os07t0240200-01
Chr07	irgsp1_rep	mRNA	7790213	7795023	.	+	.	ID=Os07t0240300-01;Name=Os07t0240300-01;Locus_id=Os07g0240300;Note=Similar to OSIGBa0153E02-OSIGBa0093I20.13 protein.;Transcript_evidence=AK072205 (DDBJ%2C Best hit),AK098977 (DDBJ%2C Best hit);ORF_evidence=Q01HR2 (UniProt);InterPro=Protein of unknown function DUF3411 (IPR021825);NIAS_FLcDNA=J013168D12,J013093D20;TENOR=Os07t0240300-01
Chr07	irgsp1_rep	five_prime_UTR	7790213	7790404	.	+	.	Parent=Os07t0240300-01
Chr07	irgsp1_rep	five_prime_UTR	7790487	7790506	.	+	.	Parent=Os07t0240300-01
Chr07	irgsp1_rep	CDS	7790507	7791109	.	+	0	Parent=Os07t0240300-01
Chr07	irgsp1_rep	CDS	7791212	7791310	.	+	0	Parent=Os07t0240300-01
Chr07	irgsp1_rep	CDS	7791407	7791627	.	+	0	Parent=Os07t0240300-01
Chr07	irgsp1_rep	CDS	7792163	7792232	.	+	1	Parent=Os07t0240300-01
Chr07	irgsp1_rep	CDS	7792337	7792416	.	+	0	Parent=Os07t0240300-01
Chr07	irgsp1_rep	CDS	7793217	7793281	.	+	1	Parent=Os07t0240300-01
Chr07	irgsp1_rep	CDS	7794320	7794513	.	+	2	Parent=Os07t0240300-01
Chr07	irgsp1_rep	three_prime_UTR	7794514	7794537	.	+	.	Parent=Os07t0240300-01
Chr07	irgsp1_rep	three_prime_UTR	7794713	7795023	.	+	.	Parent=Os07t0240300-01
Chr07	irgsp1_rep	mRNA	7796136	7796981	.	-	.	ID=Os07t0240400-01;Name=Os07t0240400-01;Locus_id=Os07g0240400;Note=Similar to MEE60 (maternal effect embryo arrest 60).;Transcript_evidence=AK062643 (DDBJ%2C Best hit);ORF_evidence=NP_196214.1 (RefSeq);NIAS_FLcDNA=001-105-D11;Expression=AK062643;TENOR=Os07t0240400-01;KEGG=Os07t0240400-01
Chr07	irgsp1_rep	five_prime_UTR	7796933	7796981	.	-	.	Parent=Os07t0240400-01
Chr07	irgsp1_rep	CDS	7796333	7796932	.	-	0	Parent=Os07t0240400-01
Chr07	irgsp1_rep	three_prime_UTR	7796136	7796332	.	-	.	Parent=Os07t0240400-01
Chr07	irgsp1_rep	mRNA	7815442	7832249	.	+	.	ID=Os07t0240600-01;Name=Os07t0240600-01;Locus_id=Os07g0240600;Oryzabase Gene Symbol Synonym(s)=OsEnS-102;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 102;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK107471 (DDBJ%2C Best hit);ORF_evidence=A2YJS4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=002-129-B04;Oryzabase=18405;Expression=AK107471;TENOR=Os07t0240600-01;KEGG=Os07t0240600-01 (EC:2.4.1.17)
Chr07	irgsp1_rep	five_prime_UTR	7815442	7815764	.	+	.	Parent=Os07t0240600-01
Chr07	irgsp1_rep	CDS	7815765	7816311	.	+	0	Parent=Os07t0240600-01
Chr07	irgsp1_rep	CDS	7831335	7832212	.	+	2	Parent=Os07t0240600-01
Chr07	irgsp1_rep	three_prime_UTR	7832213	7832249	.	+	.	Parent=Os07t0240600-01
Chr07	irgsp1_rep	mRNA	7839012	7840193	.	-	.	ID=Os07t0241050-00;Name=Os07t0241050-00;Locus_id=Os07g0241050;Note=Hypothetical protein.;Transcript_evidence=AK358998 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0241050-00
Chr07	irgsp1_rep	five_prime_UTR	7840192	7840193	.	-	.	Parent=Os07t0241050-00
Chr07	irgsp1_rep	CDS	7839688	7840191	.	-	0	Parent=Os07t0241050-00
Chr07	irgsp1_rep	three_prime_UTR	7839353	7839687	.	-	.	Parent=Os07t0241050-00
Chr07	irgsp1_rep	three_prime_UTR	7839012	7839281	.	-	.	Parent=Os07t0241050-00
Chr07	irgsp1_rep	mRNA	7900573	7902415	.	+	.	ID=Os07t0241500-01;Name=Os07t0241500-01;Locus_id=Os07g0241500;CGSNL Gene Symbol=UGT710C2;CGSNL Gene Name=UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 710C2;Oryzabase Gene Symbol Synonym(s)=OsUGT710C2;Oryzabase Gene Name Synonym(s)=UDP-glucose-dependent glycosyltransferase 710C2;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK107239 (DDBJ%2C Best hit);ORF_evidence=NP_001146547.2 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=002-125-F03;Oryzabase=21818;Expression=AK107239;TENOR=Os07t0241500-01;KEGG=Os07t0241500-01
Chr07	irgsp1_rep	five_prime_UTR	7900573	7900615	.	+	.	Parent=Os07t0241500-01
Chr07	irgsp1_rep	CDS	7900616	7901168	.	+	0	Parent=Os07t0241500-01
Chr07	irgsp1_rep	CDS	7901394	7902286	.	+	2	Parent=Os07t0241500-01
Chr07	irgsp1_rep	three_prime_UTR	7902287	7902415	.	+	.	Parent=Os07t0241500-01
Chr07	irgsp1_rep	mRNA	7903784	7904992	.	+	.	ID=Os07t0241600-00;Name=Os07t0241600-00;Locus_id=Os07g0241600;Note=UDP-glucuronosyl/UDP-glucosyltransferase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FWC7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os07t0241600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	7903784	7904329	.	+	0	Parent=Os07t0241600-00
Chr07	irgsp1_rep	CDS	7904750	7904992	.	+	0	Parent=Os07t0241600-00
Chr07	irgsp1_rep	mRNA	7905050	7909408	.	+	.	ID=Os07t0241700-00;Name=Os07t0241700-00;Locus_id=Os07g0241700;Note=Similar to Cytokinin-N-glucosyltransferase 1.;Transcript_evidence=ab initio prediction;ORF_evidence=B6STN8 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os07t0241700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	7905050	7905518	.	+	0	Parent=Os07t0241700-00
Chr07	irgsp1_rep	CDS	7908519	7909408	.	+	2	Parent=Os07t0241700-00
Chr07	irgsp1_rep	mRNA	7908497	7909288	.	-	.	ID=Os07t0241751-00;Name=Os07t0241751-00;Locus_id=Os07g0241751;Note=Hypothetical protein.;Transcript_evidence=EU972391 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0241751-00
Chr07	irgsp1_rep	five_prime_UTR	7908880	7909288	.	-	.	Parent=Os07t0241751-00
Chr07	irgsp1_rep	CDS	7908497	7908879	.	-	0	Parent=Os07t0241751-00
Chr07	irgsp1_rep	mRNA	7911954	7913687	.	+	.	ID=Os07t0241800-01;Name=Os07t0241800-01;Locus_id=Os07g0241800;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK064151 (DDBJ%2C Best hit);ORF_evidence=C4MF59 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=002-103-E05;Expression=AK064151;TENOR=Os07t0241800-01;KEGG=Os07t0241800-01
Chr07	irgsp1_rep	five_prime_UTR	7911954	7912029	.	+	.	Parent=Os07t0241800-01
Chr07	irgsp1_rep	CDS	7912030	7912526	.	+	0	Parent=Os07t0241800-01
Chr07	irgsp1_rep	CDS	7912620	7913499	.	+	1	Parent=Os07t0241800-01
Chr07	irgsp1_rep	three_prime_UTR	7913500	7913687	.	+	.	Parent=Os07t0241800-01
Chr07	irgsp1_rep	mRNA	7912285	7913416	.	-	.	ID=Os07t0241866-00;Name=Os07t0241866-00;Locus_id=Os07g0241866;Note=Hypothetical protein.;Transcript_evidence=AK358998 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0241866-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	7913013	7913416	.	-	.	Parent=Os07t0241866-00
Chr07	irgsp1_rep	CDS	7912585	7913012	.	-	0	Parent=Os07t0241866-00
Chr07	irgsp1_rep	CDS	7912285	7912497	.	-	1	Parent=Os07t0241866-00
Chr07	irgsp1_rep	mRNA	7919362	7921179	.	+	.	ID=Os07t0242000-01;Name=Os07t0242000-01;Locus_id=Os07g0242000;Oryzabase Gene Symbol Synonym(s)=Os_F0785%2C OsEnS-103;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 103;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK107347 (DDBJ%2C Best hit);ORF_evidence=B8B4Q1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810);NIAS_FLcDNA=002-126-G11;Oryzabase=17452;Expression=AK107347;TENOR=Os07t0242000-01;KEGG=Os07t0242000-01
Chr07	irgsp1_rep	five_prime_UTR	7919362	7919435	.	+	.	Parent=Os07t0242000-01
Chr07	irgsp1_rep	CDS	7919436	7920908	.	+	0	Parent=Os07t0242000-01
Chr07	irgsp1_rep	three_prime_UTR	7920909	7921179	.	+	.	Parent=Os07t0242000-01
Chr07	irgsp1_rep	mRNA	7923179	7923736	.	+	.	ID=Os07t0242050-01;Name=Os07t0242050-01;Locus_id=Os07g0242050;Note=Non-protein coding transcript.;Transcript_evidence=AK242361 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080030E24;TENOR=Os07t0242050-01
Chr07	irgsp1_rep	exon	7923179	7923736	.	+	.	Parent=Os07t0242050-01
Chr07	irgsp1_rep	mRNA	7938936	7941316	.	-	.	ID=Os07t0242400-01;Name=Os07t0242400-01;Locus_id=Os07g0242400;Oryzabase Gene Symbol Synonym(s)=OsFbox356%2C Os_F0118;Oryzabase Gene Name Synonym(s)=F-box protein 356;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK063340 (DDBJ%2C Best hit);ORF_evidence=B9FWC9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=001-114-A11;Oryzabase=17132;TENOR=Os07t0242400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	7941315	7941316	.	-	.	Parent=Os07t0242400-01
Chr07	irgsp1_rep	CDS	7941225	7941314	.	-	0	Parent=Os07t0242400-01
Chr07	irgsp1_rep	CDS	7939942	7941135	.	-	0	Parent=Os07t0242400-01
Chr07	irgsp1_rep	three_prime_UTR	7939938	7939941	.	-	.	Parent=Os07t0242400-01
Chr07	irgsp1_rep	three_prime_UTR	7938936	7939290	.	-	.	Parent=Os07t0242400-01
Chr07	irgsp1_rep	mRNA	7942756	7944900	.	+	.	ID=Os07t0242600-01;Name=Os07t0242600-01;Locus_id=Os07g0242600;Oryzabase Gene Symbol Synonym(s)=OsFbox357%2C Os_F0033;Oryzabase Gene Name Synonym(s)=F-box protein 357;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK065752 (DDBJ%2C Best hit);ORF_evidence=B8B4Q4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated domain%2C type 3 (IPR013187),Galactose oxidase%2C beta-propeller (IPR015916),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013037K22;Oryzabase=17133;Expression=AK065752;TENOR=Os07t0242600-01;KEGG=Os07t0242600-01
Chr07	irgsp1_rep	five_prime_UTR	7942756	7942936	.	+	.	Parent=Os07t0242600-01
Chr07	irgsp1_rep	five_prime_UTR	7943346	7943362	.	+	.	Parent=Os07t0242600-01
Chr07	irgsp1_rep	CDS	7943363	7944556	.	+	0	Parent=Os07t0242600-01
Chr07	irgsp1_rep	three_prime_UTR	7944557	7944900	.	+	.	Parent=Os07t0242600-01
Chr07	irgsp1_rep	mRNA	7950627	7952162	.	+	.	ID=Os07t0242700-00;Name=Os07t0242700-00;Locus_id=Os07g0242700;Oryzabase Gene Symbol Synonym(s)=OsFbox358%2C Os_F0098;Oryzabase Gene Name Synonym(s)=F-box protein 358;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=tplb0033b07 (Wheat FLcDNA);ORF_evidence=Q8GRV1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),FBD (IPR013596),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17134;TENOR=Os07t0242700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	7950627	7951469	.	+	0	Parent=Os07t0242700-00
Chr07	irgsp1_rep	CDS	7951557	7951733	.	+	0	Parent=Os07t0242700-00
Chr07	irgsp1_rep	CDS	7951836	7952162	.	+	0	Parent=Os07t0242700-00
Chr07	irgsp1_rep	mRNA	7966373	7967638	.	+	.	ID=Os07t0242900-00;Name=Os07t0242900-00;Locus_id=Os07g0242900;Oryzabase Gene Symbol Synonym(s)=OsFbox359%2C Os_F0431;Oryzabase Gene Name Synonym(s)=F-box protein 359;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8GRH6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17135;TENOR=Os07t0242900-00
Chr07	irgsp1_rep	CDS	7966373	7967638	.	+	0	Parent=Os07t0242900-00
Chr07	irgsp1_rep	mRNA	7968949	7970412	.	-	.	ID=Os07t0243000-00;Name=Os07t0243000-00;Locus_id=Os07g0243000;Note=Similar to UDP-glycosyltransferase UGT710F3.;Transcript_evidence=AK372349 (DDBJ);ORF_evidence=C4MF59 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os07t0243000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	7969911	7970412	.	-	0	Parent=Os07t0243000-00
Chr07	irgsp1_rep	CDS	7969356	7969831	.	-	2	Parent=Os07t0243000-00
Chr07	irgsp1_rep	three_prime_UTR	7968949	7969355	.	-	.	Parent=Os07t0243000-00
Chr07	irgsp1_rep	mRNA	7972937	7976113	.	-	.	ID=Os07t0243100-01;Name=Os07t0243100-01;Locus_id=Os07g0243100;Note=Similar to Mitochondrial import inner membrane translocase subunit Tim10.;Transcript_evidence=AK108213 (DDBJ%2C Best hit);ORF_evidence=B6U5I0 (UniProt);GO=Biological Process: protein targeting to mitochondrion (GO:0006626),Biological Process: protein import into mitochondrial inner membrane (GO:0045039),Cellular Component: mitochondrial intermembrane space protein transporter complex (GO:0042719);InterPro=Mitochondrial inner membrane translocase complex%2C Tim8/9/10/13-zinc finger-like (IPR004217);NIAS_FLcDNA=002-140-E01;Expression=AK108213;TENOR=Os07t0243100-01;KEGG=Os07t0243100-01
Chr07	irgsp1_rep	five_prime_UTR	7975917	7976113	.	-	.	Parent=Os07t0243100-01
Chr07	irgsp1_rep	five_prime_UTR	7975775	7975786	.	-	.	Parent=Os07t0243100-01
Chr07	irgsp1_rep	CDS	7975712	7975774	.	-	0	Parent=Os07t0243100-01
Chr07	irgsp1_rep	CDS	7974512	7974564	.	-	0	Parent=Os07t0243100-01
Chr07	irgsp1_rep	CDS	7974201	7974239	.	-	1	Parent=Os07t0243100-01
Chr07	irgsp1_rep	CDS	7973810	7973880	.	-	1	Parent=Os07t0243100-01
Chr07	irgsp1_rep	CDS	7973214	7973260	.	-	2	Parent=Os07t0243100-01
Chr07	irgsp1_rep	three_prime_UTR	7972937	7973213	.	-	.	Parent=Os07t0243100-01
Chr07	irgsp1_rep	mRNA	7982657	7983155	.	+	.	ID=Os07t0243150-01;Name=Os07t0243150-01;Locus_id=Os07g0243150;Note=Hypothetical conserved gene.;Transcript_evidence=AK242463 (DDBJ%2C Best hit);ORF_evidence=NP_001175115.1 (RefSeq);InterPro=Thylakoid soluble phosphoprotein TSP9 (IPR021584);NIAS_FLcDNA=J080301F24;TENOR=Os07t0243150-01;KEGG=Os07t0243150-01
Chr07	irgsp1_rep	five_prime_UTR	7982657	7982658	.	+	.	Parent=Os07t0243150-01
Chr07	irgsp1_rep	CDS	7982659	7982973	.	+	0	Parent=Os07t0243150-01
Chr07	irgsp1_rep	three_prime_UTR	7982974	7983155	.	+	.	Parent=Os07t0243150-01
Chr07	irgsp1_rep	mRNA	7983125	7989283	.	-	.	ID=Os07t0243200-01;Name=Os07t0243200-01;Locus_id=Os07g0243200;RAP-DB Gene Symbol Synonym(s)=AGPL4%2C OsAGPL4%2C APL4%2C OsAPL4%2C OsSTA193;RAP-DB Gene Name Synonym(s)=ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 4%2C sativa ADP-glucose pyrophosphorylase large subunit 4%2C ADP-glucose Pyrophosphorylase large subunit 4%2C AGPase large subunit 4%2C AGPase large unit 4;CGSNL Gene Symbol=AGPL4;CGSNL Gene Name=ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 4;Oryzabase Gene Symbol Synonym(s)=OsAGPL4%2C APL4%2C OsAPL4%2C OsSTA193;Oryzabase Gene Name Synonym(s)=sativa ADP-glucose pyrophosphorylase large subunit 4%2C ADP-glucose Pyrophosphorylase large subunit 4%2C AGPase large subunit 4%2C AGPase large unit 4;Note=Plastidic large subunit of ADP-glucose pyrophosphorylase (AGP)%2C Starch synthesis in rice pollen;Transcript_evidence=AK121036;ORF_evidence=Q0D7I3;GO=Biological Process: glycogen biosynthetic process (GO:0005978),Biological Process: biosynthetic process (GO:0009058),Molecular Function: glucose-1-phosphate adenylyltransferase activity (GO:0008878),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=Glucose-1-phosphate adenylyltransferase (IPR011831),Nucleotide-diphospho-sugar transferases (IPR029044),Nucleotidyl transferase domain (IPR005835),Trimeric LpxA-like (IPR011004),ADP-glucose pyrophosphorylase%2C conserved site (IPR005836);NIAS_FLcDNA=J023050O10;Manual Curation=September 14%2C 2016;Literature_PMID=27588462,17406793;Oryzabase=8254;Expression=AK121036;TENOR=Os07t0243200-01;KEGG=Os07t0243200-01 (EC:2.7.7.27)
Chr07	irgsp1_rep	five_prime_UTR	7989225	7989283	.	-	.	Parent=Os07t0243200-01
Chr07	irgsp1_rep	CDS	7989069	7989224	.	-	0	Parent=Os07t0243200-01
Chr07	irgsp1_rep	CDS	7988800	7988943	.	-	0	Parent=Os07t0243200-01
Chr07	irgsp1_rep	CDS	7988436	7988609	.	-	0	Parent=Os07t0243200-01
Chr07	irgsp1_rep	CDS	7988228	7988320	.	-	0	Parent=Os07t0243200-01
Chr07	irgsp1_rep	CDS	7988056	7988139	.	-	0	Parent=Os07t0243200-01
Chr07	irgsp1_rep	CDS	7987904	7987959	.	-	0	Parent=Os07t0243200-01
Chr07	irgsp1_rep	CDS	7987539	7987632	.	-	1	Parent=Os07t0243200-01
Chr07	irgsp1_rep	CDS	7987132	7987244	.	-	0	Parent=Os07t0243200-01
Chr07	irgsp1_rep	CDS	7986716	7986788	.	-	1	Parent=Os07t0243200-01
Chr07	irgsp1_rep	CDS	7986475	7986555	.	-	0	Parent=Os07t0243200-01
Chr07	irgsp1_rep	CDS	7986304	7986390	.	-	0	Parent=Os07t0243200-01
Chr07	irgsp1_rep	CDS	7986122	7986226	.	-	0	Parent=Os07t0243200-01
Chr07	irgsp1_rep	CDS	7985387	7985493	.	-	0	Parent=Os07t0243200-01
Chr07	irgsp1_rep	CDS	7985253	7985313	.	-	1	Parent=Os07t0243200-01
Chr07	irgsp1_rep	CDS	7984648	7984749	.	-	0	Parent=Os07t0243200-01
Chr07	irgsp1_rep	three_prime_UTR	7984622	7984647	.	-	.	Parent=Os07t0243200-01
Chr07	irgsp1_rep	three_prime_UTR	7983125	7983638	.	-	.	Parent=Os07t0243200-01
Chr07	irgsp1_rep	mRNA	8009180	8009857	.	-	.	ID=Os07t0243800-00;Name=Os07t0243800-00;Locus_id=Os07g0243800;Note=Similar to PR-1a pathogenesis related protein (Hv-1a).;Transcript_evidence=FP092693 (DDBJ);ORF_evidence=Q43489 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Allergen V5/Tpx-1-related (IPR001283),CAP domain (IPR014044),Allergen V5/Tpx-1-related%2C conserved site (IPR018244);TENOR=Os07t0243800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	8009327	8009857	.	-	0	Parent=Os07t0243800-00
Chr07	irgsp1_rep	three_prime_UTR	8009180	8009326	.	-	.	Parent=Os07t0243800-00
Chr07	irgsp1_rep	mRNA	8023965	8025746	.	+	.	ID=Os07t0244100-00;Name=Os07t0244100-00;Locus_id=Os07g0244100;Note=Similar to Pathogenesis-related protein PRB1-3.;Transcript_evidence=AK376031 (DDBJ);ORF_evidence=P35793 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Allergen V5/Tpx-1-related (IPR001283),CAP domain (IPR014044),Allergen V5/Tpx-1-related%2C conserved site (IPR018244);TENOR=Os07t0244100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	8023965	8024312	.	+	0	Parent=Os07t0244100-00
Chr07	irgsp1_rep	CDS	8025323	8025742	.	+	0	Parent=Os07t0244100-00
Chr07	irgsp1_rep	three_prime_UTR	8025743	8025746	.	+	.	Parent=Os07t0244100-00
Chr07	irgsp1_rep	mRNA	8032737	8034573	.	-	.	ID=Os07t0244200-01;Name=Os07t0244200-01;Locus_id=Os07g0244200;Note=Transferase family protein.;Transcript_evidence=AK109746 (DDBJ%2C Best hit);ORF_evidence=NP_001148135.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=002-146-F02;Expression=AK109746;TENOR=Os07t0244200-01;KEGG=Os07t0244200-01
Chr07	irgsp1_rep	five_prime_UTR	8034504	8034573	.	-	.	Parent=Os07t0244200-01
Chr07	irgsp1_rep	CDS	8034075	8034503	.	-	0	Parent=Os07t0244200-01
Chr07	irgsp1_rep	CDS	8033050	8033976	.	-	0	Parent=Os07t0244200-01
Chr07	irgsp1_rep	three_prime_UTR	8032737	8033049	.	-	.	Parent=Os07t0244200-01
Chr07	irgsp1_rep	mRNA	8033463	8034519	.	+	.	ID=Os07t0244250-00;Name=Os07t0244250-00;Locus_id=Os07g0244250;Note=Hypothetical gene.;Transcript_evidence=BT035701 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0244250-00;KEGG=Os07t0244250-00
Chr07	irgsp1_rep	five_prime_UTR	8033463	8033542	.	+	.	Parent=Os07t0244250-00
Chr07	irgsp1_rep	CDS	8033543	8034011	.	+	0	Parent=Os07t0244250-00
Chr07	irgsp1_rep	CDS	8034070	8034089	.	+	2	Parent=Os07t0244250-00
Chr07	irgsp1_rep	three_prime_UTR	8034090	8034519	.	+	.	Parent=Os07t0244250-00
Chr07	irgsp1_rep	mRNA	8037505	8042731	.	+	.	ID=Os07t0244300-01;Name=Os07t0244300-01;Locus_id=Os07g0244300;Note=Protein of unknown function DUF300 family protein.;Transcript_evidence=AK068368 (DDBJ%2C Best hit);ORF_evidence=Q9M9K7 (UniProt);InterPro=Protein of unknown function DUF300 (IPR005178);NIAS_FLcDNA=J013149E04;Expression=AK068368;TENOR=Os07t0244300-01;KEGG=Os07t0244300-01
Chr07	irgsp1_rep	five_prime_UTR	8037505	8037657	.	+	.	Parent=Os07t0244300-01
Chr07	irgsp1_rep	CDS	8037658	8037816	.	+	0	Parent=Os07t0244300-01
Chr07	irgsp1_rep	CDS	8038860	8038933	.	+	0	Parent=Os07t0244300-01
Chr07	irgsp1_rep	CDS	8040895	8041044	.	+	1	Parent=Os07t0244300-01
Chr07	irgsp1_rep	CDS	8041151	8041436	.	+	1	Parent=Os07t0244300-01
Chr07	irgsp1_rep	CDS	8041831	8042064	.	+	0	Parent=Os07t0244300-01
Chr07	irgsp1_rep	CDS	8042201	8042509	.	+	0	Parent=Os07t0244300-01
Chr07	irgsp1_rep	three_prime_UTR	8042510	8042731	.	+	.	Parent=Os07t0244300-01
Chr07	irgsp1_rep	mRNA	8038829	8042623	.	-	.	ID=Os07t0244350-00;Name=Os07t0244350-00;Locus_id=Os07g0244350;Note=Hypothetical protein.;Transcript_evidence=tplb0059f20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0244350-00
Chr07	irgsp1_rep	five_prime_UTR	8042219	8042623	.	-	.	Parent=Os07t0244350-00
Chr07	irgsp1_rep	CDS	8042198	8042218	.	-	0	Parent=Os07t0244350-00
Chr07	irgsp1_rep	CDS	8041829	8042061	.	-	0	Parent=Os07t0244350-00
Chr07	irgsp1_rep	CDS	8041423	8041429	.	-	1	Parent=Os07t0244350-00
Chr07	irgsp1_rep	three_prime_UTR	8041162	8041422	.	-	.	Parent=Os07t0244350-00
Chr07	irgsp1_rep	three_prime_UTR	8040902	8041056	.	-	.	Parent=Os07t0244350-00
Chr07	irgsp1_rep	three_prime_UTR	8038829	8038946	.	-	.	Parent=Os07t0244350-00
Chr07	irgsp1_rep	mRNA	8043562	8045191	.	-	.	ID=Os07t0244400-01;Name=Os07t0244400-01;Locus_id=Os07g0244400;Oryzabase Gene Symbol Synonym(s)=PPR;Oryzabase Gene Name Synonym(s)=Pentatricopeptide repeat (PPR) protein;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK106280 (DDBJ%2C Best hit);ORF_evidence=A2YJU9 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-100-H12;Oryzabase=22507;Expression=AK106280;TENOR=Os07t0244400-01;KEGG=Os07t0244400-01
Chr07	irgsp1_rep	five_prime_UTR	8045127	8045191	.	-	.	Parent=Os07t0244400-01
Chr07	irgsp1_rep	CDS	8043819	8045126	.	-	0	Parent=Os07t0244400-01
Chr07	irgsp1_rep	three_prime_UTR	8043562	8043818	.	-	.	Parent=Os07t0244400-01
Chr07	irgsp1_rep	mRNA	8055571	8060362	.	+	.	ID=Os07t0244600-00;Name=Os07t0244600-00;Locus_id=Os07g0244600;Note=Similar to Agmatine coumaroyltransferase.;Transcript_evidence=ab initio prediction;ORF_evidence=B6SJ46 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os07t0244600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	8055571	8055653	.	+	0	Parent=Os07t0244600-00
Chr07	irgsp1_rep	CDS	8059367	8060066	.	+	1	Parent=Os07t0244600-00
Chr07	irgsp1_rep	CDS	8060129	8060362	.	+	0	Parent=Os07t0244600-00
Chr07	irgsp1_rep	mRNA	8063799	8064413	.	+	.	ID=Os07t0244800-00;Name=Os07t0244800-00;Locus_id=Os07g0244800;Note=Similar to pectinesterase inhibitor domain containing protein.;Transcript_evidence=AK375354 (DDBJ);ORF_evidence=NP_001150252.1 (RefSeq);GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);TENOR=Os07t0244800-00;KEGG=Os07t0244800-00
Chr07	irgsp1_rep	CDS	8063799	8064413	.	+	0	Parent=Os07t0244800-00
Chr07	irgsp1_rep	mRNA	8064978	8066298	.	-	.	ID=Os07t0244900-01;Name=Os07t0244900-01;Locus_id=Os07g0244900;Note=Bifunctional inhibitor/plant lipid transfer protein/seed storage domain containing protein.;Transcript_evidence=AK287897 (DDBJ%2C Best hit);ORF_evidence=NP_001175116.1 (RefSeq);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=J065210F21;TENOR=Os07t0244900-01;KEGG=Os07t0244900-01
Chr07	irgsp1_rep	five_prime_UTR	8066221	8066298	.	-	.	Parent=Os07t0244900-01
Chr07	irgsp1_rep	CDS	8065866	8066220	.	-	0	Parent=Os07t0244900-01
Chr07	irgsp1_rep	CDS	8065476	8065550	.	-	2	Parent=Os07t0244900-01
Chr07	irgsp1_rep	CDS	8065207	8065289	.	-	2	Parent=Os07t0244900-01
Chr07	irgsp1_rep	three_prime_UTR	8064978	8065206	.	-	.	Parent=Os07t0244900-01
Chr07	irgsp1_rep	mRNA	8075642	8078140	.	+	.	ID=Os07t0245100-01;Name=Os07t0245100-01;Locus_id=Os07g0245100;Note=Similar to Cytosine deaminase (EC 3.5.4.1).;Transcript_evidence=AK100710 (DDBJ%2C Best hit);ORF_evidence=NP_001105963.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: hydrolase activity (GO:0016787);InterPro=CMP/dCMP deaminase%2C zinc-binding (IPR002125),APOBEC/CMP deaminase%2C zinc-binding (IPR016192),Cytidine deaminase-like (IPR016193);NIAS_FLcDNA=J023115F20;Expression=AK100710;TENOR=Os07t0245100-01;KEGG=Os07t0245100-01 (EC:3.5.4.1)
Chr07	irgsp1_rep	five_prime_UTR	8075642	8077014	.	+	.	Parent=Os07t0245100-01
Chr07	irgsp1_rep	CDS	8077015	8077090	.	+	0	Parent=Os07t0245100-01
Chr07	irgsp1_rep	CDS	8077233	8077423	.	+	2	Parent=Os07t0245100-01
Chr07	irgsp1_rep	CDS	8077575	8077679	.	+	0	Parent=Os07t0245100-01
Chr07	irgsp1_rep	CDS	8077767	8077955	.	+	0	Parent=Os07t0245100-01
Chr07	irgsp1_rep	three_prime_UTR	8077956	8078140	.	+	.	Parent=Os07t0245100-01
Chr07	irgsp1_rep	mRNA	8077633	8078200	.	+	.	ID=Os07t0245100-02;Name=Os07t0245100-02;Locus_id=Os07g0245100;Note=Similar to cDNA clone:J023115F20%2C full insert sequence.;Transcript_evidence=AK059133 (DDBJ%2C Best hit);ORF_evidence=NP_001105963.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Cytidine deaminase-like (IPR016193);NIAS_FLcDNA=001-022-H01;Expression=AK059133;TENOR=Os07t0245100-02;KEGG=Os07t0245100-02
Chr07	irgsp1_rep	five_prime_UTR	8077633	8077634	.	+	.	Parent=Os07t0245100-02
Chr07	irgsp1_rep	CDS	8077635	8077679	.	+	0	Parent=Os07t0245100-02
Chr07	irgsp1_rep	CDS	8077767	8077955	.	+	0	Parent=Os07t0245100-02
Chr07	irgsp1_rep	three_prime_UTR	8077956	8078200	.	+	.	Parent=Os07t0245100-02
Chr07	irgsp1_rep	mRNA	8078976	8082653	.	-	.	ID=Os07t0245200-01;Name=Os07t0245200-01;Locus_id=Os07g0245200;Oryzabase Gene Symbol Synonym(s)=OsPGL27%2C PGL27;Oryzabase Gene Name Synonym(s)=Polygalacturonases-Like 27%2C PG-like 27;Note=Similar to Polygalacturonase-like protein.;Transcript_evidence=AK102293 (DDBJ%2C Best hit);ORF_evidence=NP_001151479.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=J033089L01;Oryzabase=22304;Expression=AK102293;TENOR=Os07t0245200-01;KEGG=Os07t0245200-01
Chr07	irgsp1_rep	five_prime_UTR	8082509	8082653	.	-	.	Parent=Os07t0245200-01
Chr07	irgsp1_rep	five_prime_UTR	8082278	8082378	.	-	.	Parent=Os07t0245200-01
Chr07	irgsp1_rep	CDS	8082257	8082277	.	-	0	Parent=Os07t0245200-01
Chr07	irgsp1_rep	CDS	8081407	8081515	.	-	0	Parent=Os07t0245200-01
Chr07	irgsp1_rep	CDS	8081195	8081310	.	-	2	Parent=Os07t0245200-01
Chr07	irgsp1_rep	CDS	8080778	8080898	.	-	0	Parent=Os07t0245200-01
Chr07	irgsp1_rep	CDS	8080507	8080681	.	-	2	Parent=Os07t0245200-01
Chr07	irgsp1_rep	CDS	8080340	8080410	.	-	1	Parent=Os07t0245200-01
Chr07	irgsp1_rep	CDS	8079184	8079911	.	-	2	Parent=Os07t0245200-01
Chr07	irgsp1_rep	three_prime_UTR	8078976	8079183	.	-	.	Parent=Os07t0245200-01
Chr07	irgsp1_rep	mRNA	8129280	8134841	.	-	.	ID=Os07t0246001-00;Name=Os07t0246001-00;Locus_id=Os07g0246001;Note=Hypothetical conserved gene.;Transcript_evidence=AK287790 (DDBJ%2C Secondary hit);ORF_evidence=Q6ZLM9 (UniProt);TENOR=Os07t0246001-00
Chr07	irgsp1_rep	five_prime_UTR	8134515	8134841	.	-	.	Parent=Os07t0246001-00
Chr07	irgsp1_rep	five_prime_UTR	8133884	8133955	.	-	.	Parent=Os07t0246001-00
Chr07	irgsp1_rep	five_prime_UTR	8133814	8133854	.	-	.	Parent=Os07t0246001-00
Chr07	irgsp1_rep	five_prime_UTR	8132580	8133028	.	-	.	Parent=Os07t0246001-00
Chr07	irgsp1_rep	five_prime_UTR	8129741	8130139	.	-	.	Parent=Os07t0246001-00
Chr07	irgsp1_rep	CDS	8129280	8129740	.	-	0	Parent=Os07t0246001-00
Chr07	irgsp1_rep	mRNA	8136965	8141055	.	+	.	ID=Os07t0246200-01;Name=Os07t0246200-01;Locus_id=Os07g0246200;Oryzabase Gene Symbol Synonym(s)=CRO1%2C CRT;Oryzabase Gene Name Synonym(s)=calreticulin 1%2C calreticulin;Note=Similar to Calreticulin (Fragment).;Transcript_evidence=AK065341 (DDBJ%2C Best hit);ORF_evidence=B7EW55 (UniProt);GO=Biological Process: protein folding (GO:0006457),Cellular Component: endoplasmic reticulum (GO:0005783),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Calreticulin/calnexin (IPR001580),Concanavalin A-like lectin/glucanase (IPR008985),Calreticulin/calnexin%2C P (IPR009033),Calreticulin (IPR009169),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Calreticulin/calnexin%2C conserved site (IPR018124);NIAS_FLcDNA=J013000E04;Oryzabase=13849;Expression=AK065341;TENOR=Os07t0246200-01;KEGG=Os07t0246200-01
Chr07	irgsp1_rep	five_prime_UTR	8136965	8137040	.	+	.	Parent=Os07t0246200-01
Chr07	irgsp1_rep	CDS	8137041	8137155	.	+	0	Parent=Os07t0246200-01
Chr07	irgsp1_rep	CDS	8138195	8138302	.	+	2	Parent=Os07t0246200-01
Chr07	irgsp1_rep	CDS	8138377	8138569	.	+	2	Parent=Os07t0246200-01
Chr07	irgsp1_rep	CDS	8138655	8138913	.	+	1	Parent=Os07t0246200-01
Chr07	irgsp1_rep	CDS	8138995	8139051	.	+	0	Parent=Os07t0246200-01
Chr07	irgsp1_rep	CDS	8139277	8139324	.	+	0	Parent=Os07t0246200-01
Chr07	irgsp1_rep	CDS	8139415	8139501	.	+	0	Parent=Os07t0246200-01
Chr07	irgsp1_rep	CDS	8139587	8139644	.	+	0	Parent=Os07t0246200-01
Chr07	irgsp1_rep	CDS	8139735	8139802	.	+	2	Parent=Os07t0246200-01
Chr07	irgsp1_rep	CDS	8139910	8140005	.	+	0	Parent=Os07t0246200-01
Chr07	irgsp1_rep	CDS	8140088	8140135	.	+	0	Parent=Os07t0246200-01
Chr07	irgsp1_rep	CDS	8140502	8140540	.	+	0	Parent=Os07t0246200-01
Chr07	irgsp1_rep	CDS	8140626	8140712	.	+	0	Parent=Os07t0246200-01
Chr07	irgsp1_rep	CDS	8140811	8140822	.	+	0	Parent=Os07t0246200-01
Chr07	irgsp1_rep	three_prime_UTR	8140823	8141055	.	+	.	Parent=Os07t0246200-01
Chr07	irgsp1_rep	mRNA	8136992	8141053	.	+	.	ID=Os07t0246200-02;Name=Os07t0246200-02;Locus_id=Os07g0246200;Oryzabase Gene Symbol Synonym(s)=CRO1%2C CRT;Oryzabase Gene Name Synonym(s)=calreticulin 1%2C calreticulin;Note=Similar to Calreticulin (Fragment).;Transcript_evidence=AK099348 (DDBJ%2C Best hit),AK104826 (DDBJ%2C Best hit);ORF_evidence=B7EW55 (UniProt);GO=Biological Process: protein folding (GO:0006457),Cellular Component: endoplasmic reticulum (GO:0005783),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Calreticulin/calnexin (IPR001580),Concanavalin A-like lectin/glucanase (IPR008985),Calreticulin/calnexin%2C P (IPR009033),Calreticulin (IPR009169),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Calreticulin/calnexin%2C conserved site (IPR018124);NIAS_FLcDNA=J033025I16,001-041-F11;Oryzabase=13849;TENOR=Os07t0246200-02
Chr07	irgsp1_rep	five_prime_UTR	8136992	8137040	.	+	.	Parent=Os07t0246200-02
Chr07	irgsp1_rep	CDS	8137041	8137155	.	+	0	Parent=Os07t0246200-02
Chr07	irgsp1_rep	CDS	8138195	8138302	.	+	2	Parent=Os07t0246200-02
Chr07	irgsp1_rep	CDS	8138377	8138569	.	+	2	Parent=Os07t0246200-02
Chr07	irgsp1_rep	CDS	8138655	8138913	.	+	1	Parent=Os07t0246200-02
Chr07	irgsp1_rep	CDS	8138995	8139051	.	+	0	Parent=Os07t0246200-02
Chr07	irgsp1_rep	CDS	8139277	8139324	.	+	0	Parent=Os07t0246200-02
Chr07	irgsp1_rep	CDS	8139415	8139501	.	+	0	Parent=Os07t0246200-02
Chr07	irgsp1_rep	CDS	8139587	8139644	.	+	0	Parent=Os07t0246200-02
Chr07	irgsp1_rep	CDS	8139735	8139802	.	+	2	Parent=Os07t0246200-02
Chr07	irgsp1_rep	CDS	8139910	8140005	.	+	0	Parent=Os07t0246200-02
Chr07	irgsp1_rep	CDS	8140088	8140135	.	+	0	Parent=Os07t0246200-02
Chr07	irgsp1_rep	CDS	8140502	8140540	.	+	0	Parent=Os07t0246200-02
Chr07	irgsp1_rep	CDS	8140626	8140712	.	+	0	Parent=Os07t0246200-02
Chr07	irgsp1_rep	CDS	8140811	8140822	.	+	0	Parent=Os07t0246200-02
Chr07	irgsp1_rep	three_prime_UTR	8140823	8141053	.	+	.	Parent=Os07t0246200-02
Chr07	irgsp1_rep	mRNA	8136999	8141053	.	+	.	ID=Os07t0246200-03;Name=Os07t0246200-03;Locus_id=Os07g0246200;Oryzabase Gene Symbol Synonym(s)=CRO1%2C CRT;Oryzabase Gene Name Synonym(s)=calreticulin 1%2C calreticulin;Note=Similar to calreticulin2.;Transcript_evidence=AK104328 (DDBJ%2C Best hit);ORF_evidence=NP_001105712.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Cellular Component: endoplasmic reticulum (GO:0005783),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Calreticulin/calnexin (IPR001580),Concanavalin A-like lectin/glucanase (IPR008985),Calreticulin/calnexin%2C P (IPR009033),Calreticulin (IPR009169),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Calreticulin/calnexin%2C conserved site (IPR018124);NIAS_FLcDNA=001-028-H03;Oryzabase=13849;Expression=AK104328;TENOR=Os07t0246200-03;KEGG=Os07t0246200-03
Chr07	irgsp1_rep	five_prime_UTR	8136999	8137040	.	+	.	Parent=Os07t0246200-03
Chr07	irgsp1_rep	CDS	8137041	8137155	.	+	0	Parent=Os07t0246200-03
Chr07	irgsp1_rep	CDS	8138195	8138302	.	+	2	Parent=Os07t0246200-03
Chr07	irgsp1_rep	CDS	8138377	8138569	.	+	2	Parent=Os07t0246200-03
Chr07	irgsp1_rep	CDS	8138655	8138913	.	+	1	Parent=Os07t0246200-03
Chr07	irgsp1_rep	CDS	8138995	8139051	.	+	0	Parent=Os07t0246200-03
Chr07	irgsp1_rep	CDS	8139277	8139324	.	+	0	Parent=Os07t0246200-03
Chr07	irgsp1_rep	CDS	8139415	8139501	.	+	0	Parent=Os07t0246200-03
Chr07	irgsp1_rep	CDS	8139587	8139644	.	+	0	Parent=Os07t0246200-03
Chr07	irgsp1_rep	CDS	8139735	8139802	.	+	2	Parent=Os07t0246200-03
Chr07	irgsp1_rep	CDS	8139910	8140005	.	+	0	Parent=Os07t0246200-03
Chr07	irgsp1_rep	CDS	8140088	8140135	.	+	0	Parent=Os07t0246200-03
Chr07	irgsp1_rep	CDS	8140502	8140540	.	+	0	Parent=Os07t0246200-03
Chr07	irgsp1_rep	CDS	8140626	8140739	.	+	0	Parent=Os07t0246200-03
Chr07	irgsp1_rep	three_prime_UTR	8140740	8141053	.	+	.	Parent=Os07t0246200-03
Chr07	irgsp1_rep	mRNA	8143557	8145902	.	-	.	ID=Os07t0246300-01;Name=Os07t0246300-01;Locus_id=Os07g0246300;Oryzabase Gene Symbol Synonym(s)=OsWD40-139;Note=Conserved hypothetical protein.;Transcript_evidence=AK111786 (DDBJ%2C Best hit),AK104078 (DDBJ%2C Best hit);ORF_evidence=Q9AYG1 (UniProt);NIAS_FLcDNA=J023097O22,001-028-E03;Oryzabase=10820;TENOR=Os07t0246300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	8145901	8145902	.	-	.	Parent=Os07t0246300-01
Chr07	irgsp1_rep	CDS	8145783	8145900	.	-	0	Parent=Os07t0246300-01
Chr07	irgsp1_rep	CDS	8144833	8144849	.	-	2	Parent=Os07t0246300-01
Chr07	irgsp1_rep	three_prime_UTR	8143557	8144832	.	-	.	Parent=Os07t0246300-01
Chr07	irgsp1_rep	mRNA	8160562	8164965	.	-	.	ID=Os07t0246600-01;Name=Os07t0246600-01;Locus_id=Os07g0246600;Note=Hypothetical conserved gene.;Transcript_evidence=AK288563 (DDBJ%2C Best hit);ORF_evidence=B9FWE5 (UniProt);InterPro=Protein of unknown function DUF789 (IPR008507);NIAS_FLcDNA=J090047M09;TENOR=Os07t0246600-01;KEGG=Os07t0246600-01
Chr07	irgsp1_rep	five_prime_UTR	8164903	8164965	.	-	.	Parent=Os07t0246600-01
Chr07	irgsp1_rep	CDS	8164393	8164902	.	-	0	Parent=Os07t0246600-01
Chr07	irgsp1_rep	CDS	8163403	8163617	.	-	0	Parent=Os07t0246600-01
Chr07	irgsp1_rep	CDS	8162043	8162245	.	-	1	Parent=Os07t0246600-01
Chr07	irgsp1_rep	CDS	8161875	8161959	.	-	2	Parent=Os07t0246600-01
Chr07	irgsp1_rep	CDS	8161232	8161329	.	-	1	Parent=Os07t0246600-01
Chr07	irgsp1_rep	CDS	8160846	8161105	.	-	2	Parent=Os07t0246600-01
Chr07	irgsp1_rep	three_prime_UTR	8160562	8160845	.	-	.	Parent=Os07t0246600-01
Chr07	irgsp1_rep	mRNA	8191035	8192577	.	+	.	ID=Os07t0247000-02;Name=Os07t0247000-02;Locus_id=Os07g0247000;Oryzabase Gene Symbol Synonym(s)=AGP%2C OsAGP;Oryzabase Gene Name Synonym(s)=Arabinogalactan protein;Note=Pectinesterase inhibitor domain containing protein.;Transcript_evidence=AK072232 (DDBJ%2C Best hit),AK099091 (DDBJ%2C Best hit);ORF_evidence=B4FJ67 (UniProt);GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);NIAS_FLcDNA=J023001C01,J023015N01;Oryzabase=23021;Expression=AK072232;TENOR=Os07t0247000-02;KEGG=Os07t0247000-02
Chr07	irgsp1_rep	five_prime_UTR	8191035	8191112	.	+	.	Parent=Os07t0247000-02
Chr07	irgsp1_rep	CDS	8191113	8192198	.	+	0	Parent=Os07t0247000-02
Chr07	irgsp1_rep	three_prime_UTR	8192199	8192577	.	+	.	Parent=Os07t0247000-02
Chr07	irgsp1_rep	mRNA	8194024	8199881	.	+	.	ID=Os07t0247100-01;Name=Os07t0247100-01;Locus_id=Os07g0247100;RAP-DB Gene Symbol Synonym(s)=LLB%2C OsLLB%2C LCMT%2C OsMTS1%2C pls3;RAP-DB Gene Name Synonym(s)=LESION AND LAMINA BENDING%2C leucine carboxyl methyltransferase%2C Premature leaf senescence 3;CGSNL Gene Symbol=LLB;CGSNL Gene Name=LESION AND LAMINA BENDING;Oryzabase Gene Symbol Synonym(s)=OsLLB%2C LCMT%2C OsMTS1%2C MTS1%2C PLS3;Oryzabase Gene Name Synonym(s)=leucine carboxyl methyltransferase%2C Premature leaf senescence 3%2C O-methyltransferase 1;Note=Chloroplast-localised putative leucine carboxyl methyltransferase (LCMT)%2C O-methyltransferase%2C Regulation of jasmonate (JA)- and brassinosteroid (BR)-mediated growth and defence responses%2C Leaf senescence%2C heading date and grain production via melatonin biosynthesis;Transcript_evidence=AK068864;ORF_evidence=Q6YSY5;GO=Biological Process: methylation (GO:0032259),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Leucine carboxyl methyltransferase (IPR007213),S-adenosyl-L-methionine-dependent methyltransferase (IPR029063);NIAS_FLcDNA=J013170O10;Manual Curation=August 17%2C 2018;Literature_PMID=29901843,26864209;Oryzabase=21040;Expression=AK068864;TENOR=Os07t0247100-01;KEGG=Os07t0247100-01
Chr07	irgsp1_rep	five_prime_UTR	8194024	8194037	.	+	.	Parent=Os07t0247100-01
Chr07	irgsp1_rep	CDS	8194038	8194317	.	+	0	Parent=Os07t0247100-01
Chr07	irgsp1_rep	CDS	8194960	8195135	.	+	2	Parent=Os07t0247100-01
Chr07	irgsp1_rep	CDS	8195210	8195330	.	+	0	Parent=Os07t0247100-01
Chr07	irgsp1_rep	CDS	8196477	8196601	.	+	2	Parent=Os07t0247100-01
Chr07	irgsp1_rep	CDS	8198123	8198251	.	+	0	Parent=Os07t0247100-01
Chr07	irgsp1_rep	CDS	8198335	8198505	.	+	0	Parent=Os07t0247100-01
Chr07	irgsp1_rep	CDS	8199512	8199583	.	+	0	Parent=Os07t0247100-01
Chr07	irgsp1_rep	three_prime_UTR	8199584	8199881	.	+	.	Parent=Os07t0247100-01
Chr07	irgsp1_rep	mRNA	8202694	8202766	.	-	.	ID=Os07t0247201-00;Name=Os07t0247201-00;Locus_id=Os07g0247201;Note=Non-protein coding transcript.;Transcript_evidence=X06284 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0247201-00
Chr07	irgsp1_rep	exon	8202694	8202766	.	-	.	Parent=Os07t0247201-00
Chr07	irgsp1_rep	mRNA	8227001	8232024	.	+	.	ID=Os07t0248100-01;Name=Os07t0248100-01;Locus_id=Os07g0248100;Note=Hypothetical conserved gene.;Transcript_evidence=AK288597 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090051O20;TENOR=Os07t0248100-01;KEGG=Os07t0248100-01
Chr07	irgsp1_rep	five_prime_UTR	8227001	8230621	.	+	.	Parent=Os07t0248100-01
Chr07	irgsp1_rep	CDS	8230622	8231344	.	+	0	Parent=Os07t0248100-01
Chr07	irgsp1_rep	three_prime_UTR	8231345	8232024	.	+	.	Parent=Os07t0248100-01
Chr07	irgsp1_rep	mRNA	8238762	8239871	.	-	.	ID=Os07t0248150-00;Name=Os07t0248150-00;Locus_id=Os07g0248150;Note=Conserved hypothetical protein.;Transcript_evidence=BT034650 (DDBJ);ORF_evidence=Q6YSY0 (UniProt);TENOR=Os07t0248150-00
Chr07	irgsp1_rep	CDS	8238762	8239871	.	-	0	Parent=Os07t0248150-00
Chr07	irgsp1_rep	mRNA	8240430	8241373	.	+	.	ID=Os07t0248275-00;Name=Os07t0248275-00;Locus_id=Os07g0248275;Note=Conserved hypothetical protein.;Transcript_evidence=EU954997 (DDBJ);ORF_evidence=Q6YSX9 (UniProt);TENOR=Os07t0248275-00
Chr07	irgsp1_rep	CDS	8240430	8240604	.	+	0	Parent=Os07t0248275-00
Chr07	irgsp1_rep	CDS	8241125	8241243	.	+	2	Parent=Os07t0248275-00
Chr07	irgsp1_rep	three_prime_UTR	8241244	8241373	.	+	.	Parent=Os07t0248275-00
Chr07	irgsp1_rep	mRNA	8240431	8241373	.	-	.	ID=Os07t0248350-00;Name=Os07t0248350-00;Locus_id=Os07g0248350;Note=Similar to Tasselseed2-like short-chain dehydrogenase/reductase (Fragment).;Transcript_evidence=DQ245641 (DDBJ);ORF_evidence=Q2EFF9 (UniProt);TENOR=Os07t0248350-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	8241353	8241373	.	-	.	Parent=Os07t0248350-00
Chr07	irgsp1_rep	CDS	8241176	8241352	.	-	0	Parent=Os07t0248350-00
Chr07	irgsp1_rep	CDS	8240549	8240665	.	-	0	Parent=Os07t0248350-00
Chr07	irgsp1_rep	three_prime_UTR	8240431	8240548	.	-	.	Parent=Os07t0248350-00
Chr07	irgsp1_rep	mRNA	8248489	8258077	.	-	.	ID=Os07t0248550-00;Name=Os07t0248550-00;Locus_id=Os07g0248550;Note=Hypothetical protein.;Transcript_evidence=tplb0044f04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0248550-00
Chr07	irgsp1_rep	five_prime_UTR	8257163	8258077	.	-	.	Parent=Os07t0248550-00
Chr07	irgsp1_rep	five_prime_UTR	8249976	8250104	.	-	.	Parent=Os07t0248550-00
Chr07	irgsp1_rep	CDS	8249953	8249975	.	-	0	Parent=Os07t0248550-00
Chr07	irgsp1_rep	CDS	8248857	8249352	.	-	1	Parent=Os07t0248550-00
Chr07	irgsp1_rep	three_prime_UTR	8248489	8248856	.	-	.	Parent=Os07t0248550-00
Chr07	irgsp1_rep	mRNA	8257107	8258252	.	+	.	ID=Os07t0248600-00;Name=Os07t0248600-00;Locus_id=Os07g0248600;CGSNL Gene Symbol=RLCK225;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 225;Oryzabase Gene Symbol Synonym(s)=OsRLCK225;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 225;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=DQ013358 (DDBJ);ORF_evidence=Q7XGR2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18920;TENOR=Os07t0248600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	8257107	8258252	.	+	0	Parent=Os07t0248600-00
Chr07	irgsp1_rep	mRNA	8264833	8271642	.	-	.	ID=Os07t0248800-01;Name=Os07t0248800-01;Locus_id=Os07g0248800;Note=Similar to OSIGBa0140C02.4 protein.;Transcript_evidence=AK101732 (DDBJ%2C Best hit);ORF_evidence=Q01N12 (UniProt);InterPro=Protein of unknown function DUF2045 (IPR019141);NIAS_FLcDNA=J033061G11;TENOR=Os07t0248800-01;KEGG=Os07t0248800-01
Chr07	irgsp1_rep	five_prime_UTR	8271523	8271642	.	-	.	Parent=Os07t0248800-01
Chr07	irgsp1_rep	CDS	8271410	8271522	.	-	0	Parent=Os07t0248800-01
Chr07	irgsp1_rep	CDS	8270487	8270682	.	-	1	Parent=Os07t0248800-01
Chr07	irgsp1_rep	CDS	8270328	8270402	.	-	0	Parent=Os07t0248800-01
Chr07	irgsp1_rep	CDS	8269792	8269898	.	-	0	Parent=Os07t0248800-01
Chr07	irgsp1_rep	CDS	8269179	8269236	.	-	1	Parent=Os07t0248800-01
Chr07	irgsp1_rep	CDS	8268183	8268242	.	-	0	Parent=Os07t0248800-01
Chr07	irgsp1_rep	CDS	8268031	8268105	.	-	0	Parent=Os07t0248800-01
Chr07	irgsp1_rep	CDS	8267784	8267921	.	-	0	Parent=Os07t0248800-01
Chr07	irgsp1_rep	CDS	8266607	8266661	.	-	0	Parent=Os07t0248800-01
Chr07	irgsp1_rep	CDS	8266171	8266293	.	-	2	Parent=Os07t0248800-01
Chr07	irgsp1_rep	CDS	8265572	8265783	.	-	2	Parent=Os07t0248800-01
Chr07	irgsp1_rep	CDS	8265088	8265111	.	-	0	Parent=Os07t0248800-01
Chr07	irgsp1_rep	three_prime_UTR	8264833	8265087	.	-	.	Parent=Os07t0248800-01
Chr07	irgsp1_rep	mRNA	8264772	8271582	.	-	.	ID=Os07t0248800-02;Name=Os07t0248800-02;Locus_id=Os07g0248800;Note=Similar to OSIGBa0140C02.4 protein.;Transcript_evidence=AK288010 (DDBJ%2C Best hit);ORF_evidence=Q01N12 (UniProt);InterPro=Protein of unknown function DUF2045 (IPR019141);NIAS_FLcDNA=J075116F05;TENOR=Os07t0248800-02;KEGG=Os07t0248800-02
Chr07	irgsp1_rep	five_prime_UTR	8271523	8271582	.	-	.	Parent=Os07t0248800-02
Chr07	irgsp1_rep	CDS	8271410	8271522	.	-	0	Parent=Os07t0248800-02
Chr07	irgsp1_rep	CDS	8270487	8270682	.	-	1	Parent=Os07t0248800-02
Chr07	irgsp1_rep	CDS	8270328	8270402	.	-	0	Parent=Os07t0248800-02
Chr07	irgsp1_rep	CDS	8269792	8269898	.	-	0	Parent=Os07t0248800-02
Chr07	irgsp1_rep	CDS	8269179	8269236	.	-	1	Parent=Os07t0248800-02
Chr07	irgsp1_rep	CDS	8268183	8268242	.	-	0	Parent=Os07t0248800-02
Chr07	irgsp1_rep	CDS	8268031	8268105	.	-	0	Parent=Os07t0248800-02
Chr07	irgsp1_rep	CDS	8267784	8267921	.	-	0	Parent=Os07t0248800-02
Chr07	irgsp1_rep	CDS	8266607	8266661	.	-	0	Parent=Os07t0248800-02
Chr07	irgsp1_rep	CDS	8266171	8266293	.	-	2	Parent=Os07t0248800-02
Chr07	irgsp1_rep	CDS	8265572	8265783	.	-	2	Parent=Os07t0248800-02
Chr07	irgsp1_rep	CDS	8265088	8265111	.	-	0	Parent=Os07t0248800-02
Chr07	irgsp1_rep	three_prime_UTR	8264772	8265087	.	-	.	Parent=Os07t0248800-02
Chr07	irgsp1_rep	mRNA	8275770	8278961	.	-	.	ID=Os07t0248900-01;Name=Os07t0248900-01;Locus_id=Os07g0248900;Note=Transposase%2C MuDR%2C plant domain containing protein.;Transcript_evidence=AK066571 (DDBJ%2C Best hit),AK119603 (DDBJ%2C Best hit);ORF_evidence=B8B4S1 (UniProt);InterPro=Transposase%2C MuDR%2C plant (IPR004332);NIAS_FLcDNA=J013068K23,002-117-E09;Expression=AK066571;TENOR=Os07t0248900-01;KEGG=Os07t0248900-01
Chr07	irgsp1_rep	five_prime_UTR	8277634	8278961	.	-	.	Parent=Os07t0248900-01
Chr07	irgsp1_rep	CDS	8276527	8277633	.	-	0	Parent=Os07t0248900-01
Chr07	irgsp1_rep	three_prime_UTR	8275770	8276526	.	-	.	Parent=Os07t0248900-01
Chr07	irgsp1_rep	mRNA	8281778	8281838	.	+	.	ID=Os07t0249001-00;Name=Os07t0249001-00;Locus_id=Os07g0249001;Note=Non-protein coding transcript.;Transcript_evidence=X06283 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0249001-00
Chr07	irgsp1_rep	exon	8281778	8281838	.	+	.	Parent=Os07t0249001-00
Chr07	irgsp1_rep	mRNA	8281895	8286282	.	-	.	ID=Os07t0249100-01;Name=Os07t0249100-01;Locus_id=Os07g0249100;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK120414 (DDBJ%2C Best hit);ORF_evidence=A2YJW8 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013092H05;Expression=AK120414;TENOR=Os07t0249100-01;KEGG=Os07t0249100-01
Chr07	irgsp1_rep	five_prime_UTR	8286226	8286282	.	-	.	Parent=Os07t0249100-01
Chr07	irgsp1_rep	CDS	8283577	8286225	.	-	0	Parent=Os07t0249100-01
Chr07	irgsp1_rep	three_prime_UTR	8281895	8283576	.	-	.	Parent=Os07t0249100-01
Chr07	irgsp1_rep	mRNA	8281889	8286275	.	-	.	ID=Os07t0249100-02;Name=Os07t0249100-02;Locus_id=Os07g0249100;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK066742 (DDBJ%2C Best hit);ORF_evidence=XP_002461759.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013087A22;Expression=AK066742;TENOR=Os07t0249100-02;KEGG=Os07t0249100-02
Chr07	irgsp1_rep	five_prime_UTR	8286226	8286275	.	-	.	Parent=Os07t0249100-02
Chr07	irgsp1_rep	CDS	8283577	8286225	.	-	0	Parent=Os07t0249100-02
Chr07	irgsp1_rep	three_prime_UTR	8283227	8283576	.	-	.	Parent=Os07t0249100-02
Chr07	irgsp1_rep	three_prime_UTR	8281889	8282358	.	-	.	Parent=Os07t0249100-02
Chr07	irgsp1_rep	mRNA	8287896	8291153	.	+	.	ID=Os07t0249200-01;Name=Os07t0249200-01;Locus_id=Os07g0249200;CGSNL Gene Symbol=VAMP724;CGSNL Gene Name=VESICLE-ASSOCIATED MEMBRANE PROTEIN 724;Oryzabase Gene Symbol Synonym(s)=OsVAMP724;Oryzabase Gene Name Synonym(s)=vesicle-associated membrane protein 724;Note=Similar to Vesicle-associated membrane protein 724 (AtVAMP724) (SYBL1-like protein).;Transcript_evidence=AK059902 (DDBJ%2C Best hit);ORF_evidence=NP_001150264.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: integral to membrane (GO:0016021);InterPro=Synaptobrevin (IPR001388),Longin (IPR010908),Longin-like (IPR011012);NIAS_FLcDNA=006-208-G08;Oryzabase=23008;Expression=AK059902;TENOR=Os07t0249200-01;KEGG=Os07t0249200-01
Chr07	irgsp1_rep	five_prime_UTR	8287896	8288048	.	+	.	Parent=Os07t0249200-01
Chr07	irgsp1_rep	CDS	8288049	8288316	.	+	0	Parent=Os07t0249200-01
Chr07	irgsp1_rep	CDS	8289393	8289534	.	+	2	Parent=Os07t0249200-01
Chr07	irgsp1_rep	CDS	8289617	8289737	.	+	1	Parent=Os07t0249200-01
Chr07	irgsp1_rep	CDS	8290628	8290690	.	+	0	Parent=Os07t0249200-01
Chr07	irgsp1_rep	CDS	8290778	8290930	.	+	0	Parent=Os07t0249200-01
Chr07	irgsp1_rep	three_prime_UTR	8290931	8291153	.	+	.	Parent=Os07t0249200-01
Chr07	irgsp1_rep	mRNA	8287971	8291152	.	+	.	ID=Os07t0249200-02;Name=Os07t0249200-02;Locus_id=Os07g0249200;CGSNL Gene Symbol=VAMP724;CGSNL Gene Name=VESICLE-ASSOCIATED MEMBRANE PROTEIN 724;Oryzabase Gene Symbol Synonym(s)=OsVAMP724;Oryzabase Gene Name Synonym(s)=vesicle-associated membrane protein 724;Note=Similar to Vesicle-associated membrane protein 724 (AtVAMP724) (SYBL1-like protein).;Transcript_evidence=AK102619 (DDBJ%2C Best hit);ORF_evidence=NP_001150264.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: integral to membrane (GO:0016021);InterPro=Synaptobrevin (IPR001388),Longin (IPR010908),Longin-like (IPR011012);NIAS_FLcDNA=J033099G24;Oryzabase=23008;Expression=AK102619;TENOR=Os07t0249200-02;KEGG=Os07t0249200-02
Chr07	irgsp1_rep	five_prime_UTR	8287971	8288048	.	+	.	Parent=Os07t0249200-02
Chr07	irgsp1_rep	CDS	8288049	8288316	.	+	0	Parent=Os07t0249200-02
Chr07	irgsp1_rep	CDS	8289393	8289534	.	+	2	Parent=Os07t0249200-02
Chr07	irgsp1_rep	CDS	8289617	8289737	.	+	1	Parent=Os07t0249200-02
Chr07	irgsp1_rep	CDS	8290628	8290690	.	+	0	Parent=Os07t0249200-02
Chr07	irgsp1_rep	CDS	8290778	8290930	.	+	0	Parent=Os07t0249200-02
Chr07	irgsp1_rep	three_prime_UTR	8290931	8291152	.	+	.	Parent=Os07t0249200-02
Chr07	irgsp1_rep	mRNA	8316332	8321402	.	+	.	ID=Os07t0249600-01;Name=Os07t0249600-01;Locus_id=Os07g0249600;Note=Dcp1-like decapping family protein.;Transcript_evidence=AK067442 (DDBJ%2C Best hit);ORF_evidence=B6T785 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Dcp1-like decapping (IPR010334),Pleckstrin homology-type (IPR011993);NIAS_FLcDNA=J013100P19;Expression=AK067442;TENOR=Os07t0249600-01;KEGG=Os07t0249600-01
Chr07	irgsp1_rep	five_prime_UTR	8316332	8316549	.	+	.	Parent=Os07t0249600-01
Chr07	irgsp1_rep	CDS	8316550	8316726	.	+	0	Parent=Os07t0249600-01
Chr07	irgsp1_rep	CDS	8316832	8316872	.	+	0	Parent=Os07t0249600-01
Chr07	irgsp1_rep	CDS	8317915	8317964	.	+	1	Parent=Os07t0249600-01
Chr07	irgsp1_rep	CDS	8318346	8318490	.	+	2	Parent=Os07t0249600-01
Chr07	irgsp1_rep	CDS	8319414	8319470	.	+	1	Parent=Os07t0249600-01
Chr07	irgsp1_rep	CDS	8319985	8320105	.	+	1	Parent=Os07t0249600-01
Chr07	irgsp1_rep	CDS	8320280	8320789	.	+	0	Parent=Os07t0249600-01
Chr07	irgsp1_rep	CDS	8321086	8321133	.	+	0	Parent=Os07t0249600-01
Chr07	irgsp1_rep	three_prime_UTR	8321134	8321402	.	+	.	Parent=Os07t0249600-01
Chr07	irgsp1_rep	mRNA	8316361	8321395	.	+	.	ID=Os07t0249600-02;Name=Os07t0249600-02;Locus_id=Os07g0249600;Note=Dcp1-like decapping family protein.;Transcript_evidence=AK104695 (DDBJ%2C Best hit);ORF_evidence=B6T785 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Dcp1-like decapping (IPR010334),Pleckstrin homology-type (IPR011993);NIAS_FLcDNA=001-037-A01;Expression=AK104695;TENOR=Os07t0249600-02;KEGG=Os07t0249600-02
Chr07	irgsp1_rep	five_prime_UTR	8316361	8316549	.	+	.	Parent=Os07t0249600-02
Chr07	irgsp1_rep	CDS	8316550	8316726	.	+	0	Parent=Os07t0249600-02
Chr07	irgsp1_rep	CDS	8316832	8316872	.	+	0	Parent=Os07t0249600-02
Chr07	irgsp1_rep	CDS	8317915	8317964	.	+	1	Parent=Os07t0249600-02
Chr07	irgsp1_rep	CDS	8318346	8318490	.	+	2	Parent=Os07t0249600-02
Chr07	irgsp1_rep	CDS	8319414	8319470	.	+	1	Parent=Os07t0249600-02
Chr07	irgsp1_rep	CDS	8319985	8320105	.	+	1	Parent=Os07t0249600-02
Chr07	irgsp1_rep	CDS	8320280	8320789	.	+	0	Parent=Os07t0249600-02
Chr07	irgsp1_rep	CDS	8321086	8321133	.	+	0	Parent=Os07t0249600-02
Chr07	irgsp1_rep	three_prime_UTR	8321134	8321395	.	+	.	Parent=Os07t0249600-02
Chr07	irgsp1_rep	mRNA	8321651	8325048	.	-	.	ID=Os07t0249700-01;Name=Os07t0249700-01;Locus_id=Os07g0249700;CGSNL Gene Symbol=AH2;CGSNL Gene Name=AMIDOHYDROLASE 2;Oryzabase Gene Symbol Synonym(s)=OsILR1%2C ILR1%2C OsAH2;Oryzabase Gene Name Synonym(s)=IAA-LEUCINE RESISTANT1%2C IAA-LEUCINE RESISTANT 1%2C amidohydrolase 2;Note=Similar to IAA-amino acid hydrolase ILR1-like 7.;Transcript_evidence=AK243613 (DDBJ%2C Best hit);ORF_evidence=Q8H3C9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Peptidase M20 (IPR002933),Peptidase M20%2C dimerisation (IPR011650),Amidohydrolase (IPR017439);NIAS_FLcDNA=J100085L11;Oryzabase=19927,23117;TENOR=Os07t0249700-01;KEGG=Os07t0249700-01
Chr07	irgsp1_rep	five_prime_UTR	8325048	8325048	.	-	.	Parent=Os07t0249700-01
Chr07	irgsp1_rep	CDS	8324637	8325047	.	-	0	Parent=Os07t0249700-01
Chr07	irgsp1_rep	CDS	8323292	8323417	.	-	0	Parent=Os07t0249700-01
Chr07	irgsp1_rep	CDS	8322674	8322988	.	-	0	Parent=Os07t0249700-01
Chr07	irgsp1_rep	CDS	8322413	8322541	.	-	0	Parent=Os07t0249700-01
Chr07	irgsp1_rep	CDS	8321858	8322241	.	-	0	Parent=Os07t0249700-01
Chr07	irgsp1_rep	three_prime_UTR	8321651	8321857	.	-	.	Parent=Os07t0249700-01
Chr07	irgsp1_rep	mRNA	8326644	8329267	.	-	.	ID=Os07t0249800-01;Name=Os07t0249800-01;Locus_id=Os07g0249800;Oryzabase Gene Symbol Synonym(s)=OsILL8%2C ILL8%2C OsAH4%2C AH4;Oryzabase Gene Name Synonym(s)=amidohydrolase 4;Note=Similar to IAA-amino acid hydrolase ILR1-like 8.;Transcript_evidence=AK110647 (DDBJ%2C Best hit);ORF_evidence=Q8H3C8 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Peptidase M20 (IPR002933),Peptidase M20%2C dimerisation (IPR011650),Amidohydrolase (IPR017439);NIAS_FLcDNA=002-169-D08;Oryzabase=22551;TENOR=Os07t0249800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	8329244	8329267	.	-	0	Parent=Os07t0249800-01
Chr07	irgsp1_rep	CDS	8328128	8328442	.	-	0	Parent=Os07t0249800-01
Chr07	irgsp1_rep	CDS	8327808	8327936	.	-	0	Parent=Os07t0249800-01
Chr07	irgsp1_rep	CDS	8326854	8327237	.	-	0	Parent=Os07t0249800-01
Chr07	irgsp1_rep	three_prime_UTR	8326644	8326853	.	-	.	Parent=Os07t0249800-01
Chr07	irgsp1_rep	mRNA	8334409	8335722	.	-	.	ID=Os07t0249900-01;Name=Os07t0249900-01;Locus_id=Os07g0249900;CGSNL Gene Symbol=AH3;CGSNL Gene Name=AMIDOHYDROLASE 3;Oryzabase Gene Symbol Synonym(s)=OsAH3;Oryzabase Gene Name Synonym(s)=amidohydrolase 3;Note=Peptidase M20 family protein.;Transcript_evidence=AK110676 (DDBJ%2C Best hit);ORF_evidence=Q8H3C7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Peptidase M20 (IPR002933),Peptidase M20%2C dimerisation (IPR011650);NIAS_FLcDNA=002-169-G10;Oryzabase=23118;Expression=AK110676;TENOR=Os07t0249900-01;KEGG=Os07t0249900-01
Chr07	irgsp1_rep	five_prime_UTR	8335722	8335722	.	-	.	Parent=Os07t0249900-01
Chr07	irgsp1_rep	CDS	8335626	8335721	.	-	0	Parent=Os07t0249900-01
Chr07	irgsp1_rep	CDS	8334665	8335048	.	-	0	Parent=Os07t0249900-01
Chr07	irgsp1_rep	three_prime_UTR	8334409	8334664	.	-	.	Parent=Os07t0249900-01
Chr07	irgsp1_rep	mRNA	8347720	8349518	.	-	.	ID=Os07t0250100-00;Name=Os07t0250100-00;Locus_id=Os07g0250100;Note=Similar to cytokinin-O-glucosyltransferase 2.;Transcript_evidence=EU961625 (DDBJ);ORF_evidence=NP_001148991.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os07t0250100-00
Chr07	irgsp1_rep	CDS	8348472	8349518	.	-	0	Parent=Os07t0250100-00
Chr07	irgsp1_rep	CDS	8347720	8348208	.	-	0	Parent=Os07t0250100-00
Chr07	irgsp1_rep	mRNA	8352084	8354841	.	+	.	ID=Os07t0250300-01;Name=Os07t0250300-01;Locus_id=Os07g0250300;Note=Conserved hypothetical protein.;Transcript_evidence=AK072884 (DDBJ%2C Best hit);ORF_evidence=A2YJX7 (UniProt);NIAS_FLcDNA=J023149L07;Expression=AK072884;TENOR=Os07t0250300-01;KEGG=Os07t0250300-01
Chr07	irgsp1_rep	five_prime_UTR	8352084	8352394	.	+	.	Parent=Os07t0250300-01
Chr07	irgsp1_rep	CDS	8352395	8352553	.	+	0	Parent=Os07t0250300-01
Chr07	irgsp1_rep	CDS	8354442	8354606	.	+	0	Parent=Os07t0250300-01
Chr07	irgsp1_rep	three_prime_UTR	8354607	8354841	.	+	.	Parent=Os07t0250300-01
Chr07	irgsp1_rep	mRNA	8352142	8354841	.	+	.	ID=Os07t0250300-02;Name=Os07t0250300-02;Locus_id=Os07g0250300;Note=Hypothetical conserved gene.;Transcript_evidence=AK065043 (DDBJ%2C Best hit);ORF_evidence=A2YJX7 (UniProt);NIAS_FLcDNA=J013001H21;Expression=AK065043;TENOR=Os07t0250300-02;KEGG=Os07t0250300-02
Chr07	irgsp1_rep	five_prime_UTR	8352142	8352394	.	+	.	Parent=Os07t0250300-02
Chr07	irgsp1_rep	CDS	8352395	8352637	.	+	0	Parent=Os07t0250300-02
Chr07	irgsp1_rep	three_prime_UTR	8352638	8354841	.	+	.	Parent=Os07t0250300-02
Chr07	irgsp1_rep	mRNA	8352158	8354857	.	+	.	ID=Os07t0250300-03;Name=Os07t0250300-03;Locus_id=Os07g0250300;Note=Conserved hypothetical protein.;Transcript_evidence=AK098969 (DDBJ%2C Best hit);ORF_evidence=A2YJX7 (UniProt);NIAS_FLcDNA=J013075B02;Expression=AK098969;TENOR=Os07t0250300-03;KEGG=Os07t0250300-03
Chr07	irgsp1_rep	five_prime_UTR	8352158	8352394	.	+	.	Parent=Os07t0250300-03
Chr07	irgsp1_rep	CDS	8352395	8352553	.	+	0	Parent=Os07t0250300-03
Chr07	irgsp1_rep	CDS	8354442	8354606	.	+	0	Parent=Os07t0250300-03
Chr07	irgsp1_rep	three_prime_UTR	8354607	8354857	.	+	.	Parent=Os07t0250300-03
Chr07	irgsp1_rep	mRNA	8358588	8359205	.	-	.	ID=Os07t0250501-00;Name=Os07t0250501-00;Locus_id=Os07g0250501;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8GRI4 (UniProt);TENOR=Os07t0250501-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	8358588	8359205	.	-	0	Parent=Os07t0250501-00
Chr07	irgsp1_rep	mRNA	8382164	8383056	.	-	.	ID=Os07t0250900-01;Name=Os07t0250900-01;Locus_id=Os07g0250900;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK107935 (DDBJ%2C Best hit);ORF_evidence=A2YJY0 (UniProt);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=002-135-A06;Expression=AK107935;TENOR=Os07t0250900-01;KEGG=Os07t0250900-01
Chr07	irgsp1_rep	five_prime_UTR	8383020	8383056	.	-	.	Parent=Os07t0250900-01
Chr07	irgsp1_rep	CDS	8382336	8383019	.	-	0	Parent=Os07t0250900-01
Chr07	irgsp1_rep	three_prime_UTR	8382164	8382335	.	-	.	Parent=Os07t0250900-01
Chr07	irgsp1_rep	mRNA	8406702	8407084	.	-	.	ID=Os07t0251200-01;Name=Os07t0251200-01;Locus_id=Os07g0251200;Note=Conserved hypothetical protein.;Transcript_evidence=AK288078 (DDBJ%2C Best hit);ORF_evidence=NP_001059299.2 (RefSeq);NIAS_FLcDNA=J075164E22;TENOR=Os07t0251200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	8407084	8407084	.	-	.	Parent=Os07t0251200-01
Chr07	irgsp1_rep	CDS	8407027	8407083	.	-	0	Parent=Os07t0251200-01
Chr07	irgsp1_rep	three_prime_UTR	8406702	8407026	.	-	.	Parent=Os07t0251200-01
Chr07	irgsp1_rep	mRNA	8428311	8428643	.	-	.	ID=Os07t0251301-00;Name=Os07t0251301-00;Locus_id=Os07g0251301;Note=Similar to Ribosomal phosphoprotein P0.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001175120.1 (RefSeq);GO=Biological Process: translational elongation (GO:0006414),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein 60S (IPR001813);TENOR=Os07t0251301-00;KEGG=Os07t0251301-00
Chr07	irgsp1_rep	CDS	8428311	8428643	.	-	0	Parent=Os07t0251301-00
Chr07	irgsp1_rep	mRNA	8434885	8437233	.	-	.	ID=Os07t0251500-00;Name=Os07t0251500-00;Locus_id=Os07g0251500;Note=Similar to ferredoxin3.;Transcript_evidence=EU958223 (DDBJ);ORF_evidence=NP_001105346.1 (RefSeq);GO=Biological Process: electron transport chain (GO:0022900),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: iron-sulfur cluster binding (GO:0051536),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=Ferredoxin (IPR001041),2Fe-2S ferredoxin%2C iron-sulphur binding site (IPR006058),Ferredoxin [2Fe-2S]%2C plant (IPR010241),Beta-grasp fold%2C ferredoxin-type (IPR012675);TENOR=Os07t0251500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	8437145	8437233	.	-	.	Parent=Os07t0251500-00
Chr07	irgsp1_rep	five_prime_UTR	8435188	8435266	.	-	.	Parent=Os07t0251500-00
Chr07	irgsp1_rep	CDS	8434885	8435187	.	-	0	Parent=Os07t0251500-00
Chr07	irgsp1_rep	mRNA	8465826	8472252	.	+	.	ID=Os07t0251900-01;Name=Os07t0251900-01;Locus_id=Os07g0251900;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=AK066280 (DDBJ%2C Best hit);ORF_evidence=A2ZBY8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J013066D13;Expression=AK066280;TENOR=Os07t0251900-01;KEGG=Os07t0251900-01
Chr07	irgsp1_rep	five_prime_UTR	8465826	8465921	.	+	.	Parent=Os07t0251900-01
Chr07	irgsp1_rep	five_prime_UTR	8468208	8468427	.	+	.	Parent=Os07t0251900-01
Chr07	irgsp1_rep	CDS	8468428	8469885	.	+	0	Parent=Os07t0251900-01
Chr07	irgsp1_rep	three_prime_UTR	8469886	8472252	.	+	.	Parent=Os07t0251900-01
Chr07	irgsp1_rep	mRNA	8477420	8482663	.	+	.	ID=Os07t0252000-01;Name=Os07t0252000-01;Locus_id=Os07g0252000;Oryzabase Gene Symbol Synonym(s)=OsWD40-140;Note=WD40 repeat%2C region domain containing protein.;Transcript_evidence=AK109741 (DDBJ%2C Best hit);ORF_evidence=B8B4S9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=002-146-E02;Oryzabase=10821;Expression=AK109741;TENOR=Os07t0252000-01;KEGG=Os07t0252000-01
Chr07	irgsp1_rep	five_prime_UTR	8477420	8477620	.	+	.	Parent=Os07t0252000-01
Chr07	irgsp1_rep	CDS	8477621	8477812	.	+	0	Parent=Os07t0252000-01
Chr07	irgsp1_rep	CDS	8477903	8478049	.	+	0	Parent=Os07t0252000-01
Chr07	irgsp1_rep	CDS	8478170	8478388	.	+	0	Parent=Os07t0252000-01
Chr07	irgsp1_rep	CDS	8478541	8478605	.	+	0	Parent=Os07t0252000-01
Chr07	irgsp1_rep	CDS	8479181	8479246	.	+	1	Parent=Os07t0252000-01
Chr07	irgsp1_rep	CDS	8479398	8479475	.	+	1	Parent=Os07t0252000-01
Chr07	irgsp1_rep	CDS	8480381	8480443	.	+	1	Parent=Os07t0252000-01
Chr07	irgsp1_rep	CDS	8481557	8481626	.	+	1	Parent=Os07t0252000-01
Chr07	irgsp1_rep	CDS	8482003	8482086	.	+	0	Parent=Os07t0252000-01
Chr07	irgsp1_rep	CDS	8482313	8482390	.	+	0	Parent=Os07t0252000-01
Chr07	irgsp1_rep	three_prime_UTR	8482391	8482663	.	+	.	Parent=Os07t0252000-01
Chr07	irgsp1_rep	mRNA	8484527	8485591	.	-	.	ID=Os07t0252200-01;Name=Os07t0252200-01;Locus_id=Os07g0252200;Note=Hypothetical conserved gene.;Transcript_evidence=AK066170 (DDBJ%2C Best hit);ORF_evidence=A3BIA8 (UniProt);NIAS_FLcDNA=J013055C24;Expression=AK066170;TENOR=Os07t0252200-01;KEGG=Os07t0252200-01
Chr07	irgsp1_rep	five_prime_UTR	8485480	8485591	.	-	.	Parent=Os07t0252200-01
Chr07	irgsp1_rep	CDS	8485183	8485479	.	-	0	Parent=Os07t0252200-01
Chr07	irgsp1_rep	three_prime_UTR	8484527	8485182	.	-	.	Parent=Os07t0252200-01
Chr07	irgsp1_rep	mRNA	8484878	8485896	.	+	.	ID=Os07t0252300-01;Name=Os07t0252300-01;Locus_id=Os07g0252300;Note=Hypothetical gene.;Transcript_evidence=AK099505 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013028O17;Expression=AK099505;TENOR=Os07t0252300-01;KEGG=Os07t0252300-01
Chr07	irgsp1_rep	five_prime_UTR	8484878	8485453	.	+	.	Parent=Os07t0252300-01
Chr07	irgsp1_rep	CDS	8485454	8485669	.	+	0	Parent=Os07t0252300-01
Chr07	irgsp1_rep	three_prime_UTR	8485670	8485896	.	+	.	Parent=Os07t0252300-01
Chr07	irgsp1_rep	mRNA	8496288	8501641	.	+	.	ID=Os07t0252400-01;Name=Os07t0252400-01;Locus_id=Os07g0252400;CGSNL Gene Symbol=CESA6;CGSNL Gene Name=CELLULOSE SYNTHASE A6;Oryzabase Gene Symbol Synonym(s)=OsCesA6%2C OsCESA6%2C OS_CESA06;Oryzabase Gene Name Synonym(s)=Cellulose synthase A catalytic subunit 6 [UDP-forming]%2C Cellulose synthase A catalytic subunit 6;Note=Similar to Cellulose synthase-8.;Transcript_evidence=AK100914 (DDBJ%2C Best hit);ORF_evidence=Q4U0Z3 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Zinc finger%2C RING-type (IPR001841),Cellulose synthase (IPR005150),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J023133D04;Oryzabase=9057;Expression=AK100914;TENOR=Os07t0252400-01;KEGG=Os07t0252400-01 (EC:2.4.1.12)
Chr07	irgsp1_rep	five_prime_UTR	8496288	8496351	.	+	.	Parent=Os07t0252400-01
Chr07	irgsp1_rep	CDS	8496352	8496637	.	+	0	Parent=Os07t0252400-01
Chr07	irgsp1_rep	CDS	8496713	8496912	.	+	2	Parent=Os07t0252400-01
Chr07	irgsp1_rep	CDS	8497018	8497129	.	+	0	Parent=Os07t0252400-01
Chr07	irgsp1_rep	CDS	8497220	8497388	.	+	2	Parent=Os07t0252400-01
Chr07	irgsp1_rep	CDS	8498023	8498289	.	+	1	Parent=Os07t0252400-01
Chr07	irgsp1_rep	CDS	8498377	8498722	.	+	1	Parent=Os07t0252400-01
Chr07	irgsp1_rep	CDS	8498808	8498945	.	+	0	Parent=Os07t0252400-01
Chr07	irgsp1_rep	CDS	8499041	8499166	.	+	0	Parent=Os07t0252400-01
Chr07	irgsp1_rep	CDS	8499266	8499478	.	+	0	Parent=Os07t0252400-01
Chr07	irgsp1_rep	CDS	8499565	8499853	.	+	0	Parent=Os07t0252400-01
Chr07	irgsp1_rep	CDS	8499943	8500139	.	+	2	Parent=Os07t0252400-01
Chr07	irgsp1_rep	CDS	8500223	8500573	.	+	0	Parent=Os07t0252400-01
Chr07	irgsp1_rep	CDS	8500655	8501239	.	+	0	Parent=Os07t0252400-01
Chr07	irgsp1_rep	three_prime_UTR	8501240	8501641	.	+	.	Parent=Os07t0252400-01
Chr07	irgsp1_rep	mRNA	8500478	8501893	.	+	.	ID=Os07t0252400-02;Name=Os07t0252400-02;Locus_id=Os07g0252400;CGSNL Gene Symbol=CESA6;CGSNL Gene Name=CELLULOSE SYNTHASE A6;Oryzabase Gene Symbol Synonym(s)=OsCesA6%2C OsCESA6%2C OS_CESA06;Oryzabase Gene Name Synonym(s)=Cellulose synthase A catalytic subunit 6 [UDP-forming]%2C Cellulose synthase A catalytic subunit 6;Note=Similar to Cellulose synthase BoCesA7.;Transcript_evidence=AK059649 (DDBJ%2C Best hit);ORF_evidence=Q4U0Z3 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150);NIAS_FLcDNA=001-031-C05;Oryzabase=9057;Expression=AK059649;TENOR=Os07t0252400-02;KEGG=Os07t0252400-02 (EC:2.4.1.12)
Chr07	irgsp1_rep	CDS	8500478	8500573	.	+	0	Parent=Os07t0252400-02
Chr07	irgsp1_rep	CDS	8500655	8501239	.	+	0	Parent=Os07t0252400-02
Chr07	irgsp1_rep	three_prime_UTR	8501240	8501893	.	+	.	Parent=Os07t0252400-02
Chr07	irgsp1_rep	mRNA	8525617	8526466	.	+	.	ID=Os07t0252800-01;Name=Os07t0252800-01;Locus_id=Os07g0252800;Note=Conserved hypothetical protein.;Transcript_evidence=AK107878 (DDBJ%2C Best hit);ORF_evidence=A2YJZ1 (UniProt);NIAS_FLcDNA=002-134-D03;Expression=AK107878;TENOR=Os07t0252800-01;KEGG=Os07t0252800-01
Chr07	irgsp1_rep	five_prime_UTR	8525617	8525751	.	+	.	Parent=Os07t0252800-01
Chr07	irgsp1_rep	CDS	8525752	8525941	.	+	0	Parent=Os07t0252800-01
Chr07	irgsp1_rep	CDS	8526037	8526314	.	+	2	Parent=Os07t0252800-01
Chr07	irgsp1_rep	three_prime_UTR	8526315	8526466	.	+	.	Parent=Os07t0252800-01
Chr07	irgsp1_rep	mRNA	8529427	8532020	.	+	.	ID=Os07t0253000-01;Name=Os07t0253000-01;Locus_id=Os07g0253000;Note=Conserved hypothetical protein.;Transcript_evidence=AK065968 (DDBJ%2C Best hit);ORF_evidence=A2YJZ2 (UniProt);NIAS_FLcDNA=J013046D10;Expression=AK065968;TENOR=Os07t0253000-01;KEGG=Os07t0253000-01
Chr07	irgsp1_rep	five_prime_UTR	8529427	8529499	.	+	.	Parent=Os07t0253000-01
Chr07	irgsp1_rep	CDS	8529500	8529608	.	+	0	Parent=Os07t0253000-01
Chr07	irgsp1_rep	CDS	8531510	8531775	.	+	2	Parent=Os07t0253000-01
Chr07	irgsp1_rep	three_prime_UTR	8531776	8532020	.	+	.	Parent=Os07t0253000-01
Chr07	irgsp1_rep	mRNA	8535823	8543276	.	+	.	ID=Os07t0253100-01;Name=Os07t0253100-01;Locus_id=Os07g0253100;Note=Conserved hypothetical protein.;Transcript_evidence=AK069101 (DDBJ%2C Best hit);ORF_evidence=Q5JMT0 (UniProt);NIAS_FLcDNA=J023007B08;TENOR=Os07t0253100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	8535823	8535823	.	+	.	Parent=Os07t0253100-01
Chr07	irgsp1_rep	CDS	8535824	8536135	.	+	0	Parent=Os07t0253100-01
Chr07	irgsp1_rep	three_prime_UTR	8536136	8538077	.	+	.	Parent=Os07t0253100-01
Chr07	irgsp1_rep	three_prime_UTR	8542807	8542862	.	+	.	Parent=Os07t0253100-01
Chr07	irgsp1_rep	three_prime_UTR	8542986	8543276	.	+	.	Parent=Os07t0253100-01
Chr07	irgsp1_rep	mRNA	8704268	8706000	.	-	.	ID=Os07t0255200-01;Name=Os07t0255200-01;Locus_id=Os07g0255200;Note=Similar to Helicase-like protein [Oryza sativa (japonica cultivar-group)].;Transcript_evidence=AK062290 (DDBJ%2C Best hit);ORF_evidence=Q851V4 (UniProt);InterPro=DNA helicase PIF1%2C ATP-dependent (IPR010285);NIAS_FLcDNA=001-100-E06;Expression=AK062290;TENOR=Os07t0255200-01;KEGG=Os07t0255200-01
Chr07	irgsp1_rep	five_prime_UTR	8705479	8706000	.	-	.	Parent=Os07t0255200-01
Chr07	irgsp1_rep	five_prime_UTR	8705362	8705380	.	-	.	Parent=Os07t0255200-01
Chr07	irgsp1_rep	CDS	8704714	8705361	.	-	0	Parent=Os07t0255200-01
Chr07	irgsp1_rep	three_prime_UTR	8704268	8704713	.	-	.	Parent=Os07t0255200-01
Chr07	irgsp1_rep	mRNA	8709616	8710266	.	+	.	ID=Os07t0255300-01;Name=Os07t0255300-01;Locus_id=Os07g0255300;Note=Conserved hypothetical protein.;Transcript_evidence=AK242037 (DDBJ%2C Best hit);ORF_evidence=NP_001175122.1 (RefSeq);NIAS_FLcDNA=J075118F23;TENOR=Os07t0255300-01;KEGG=Os07t0255300-01
Chr07	irgsp1_rep	CDS	8709616	8710005	.	+	0	Parent=Os07t0255300-01
Chr07	irgsp1_rep	three_prime_UTR	8710006	8710266	.	+	.	Parent=Os07t0255300-01
Chr07	irgsp1_rep	mRNA	8783519	8785197	.	-	.	ID=Os07t0255900-00;Name=Os07t0255900-00;Locus_id=Os07g0255900;Oryzabase Gene Symbol Synonym(s)=OsTBL46%2C TBL46;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 46;Note=Domain of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q84Z44 (UniProt);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);Oryzabase=21501;TENOR=Os07t0255900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	8784965	8785197	.	-	0	Parent=Os07t0255900-00
Chr07	irgsp1_rep	CDS	8783519	8784653	.	-	1	Parent=Os07t0255900-00
Chr07	irgsp1_rep	mRNA	8807273	8811445	.	+	.	ID=Os07t0256200-01;Name=Os07t0256200-01;Locus_id=Os07g0256200;Note=RNA recognition motif%2C RNP-1 domain containing protein.;Transcript_evidence=AK072904 (DDBJ%2C Best hit);ORF_evidence=A3BIC6 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023148I23;Expression=AK072904;TENOR=Os07t0256200-01;KEGG=Os07t0256200-01
Chr07	irgsp1_rep	five_prime_UTR	8807273	8807428	.	+	.	Parent=Os07t0256200-01
Chr07	irgsp1_rep	CDS	8807429	8807574	.	+	0	Parent=Os07t0256200-01
Chr07	irgsp1_rep	CDS	8808576	8810832	.	+	1	Parent=Os07t0256200-01
Chr07	irgsp1_rep	CDS	8811033	8811206	.	+	0	Parent=Os07t0256200-01
Chr07	irgsp1_rep	three_prime_UTR	8811207	8811445	.	+	.	Parent=Os07t0256200-01
Chr07	irgsp1_rep	mRNA	8812366	8815314	.	-	.	ID=Os07t0256300-00;Name=Os07t0256300-00;Locus_id=Os07g0256300;Note=Conserved hypothetical protein.;Transcript_evidence=EU961484 (DDBJ);ORF_evidence=B8AES2 (UniProt);TENOR=Os07t0256300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	8815091	8815314	.	-	0	Parent=Os07t0256300-00
Chr07	irgsp1_rep	CDS	8814880	8814969	.	-	1	Parent=Os07t0256300-00
Chr07	irgsp1_rep	CDS	8813929	8813988	.	-	1	Parent=Os07t0256300-00
Chr07	irgsp1_rep	CDS	8813703	8813742	.	-	1	Parent=Os07t0256300-00
Chr07	irgsp1_rep	CDS	8813533	8813629	.	-	0	Parent=Os07t0256300-00
Chr07	irgsp1_rep	CDS	8812768	8812827	.	-	2	Parent=Os07t0256300-00
Chr07	irgsp1_rep	CDS	8812366	8812694	.	-	2	Parent=Os07t0256300-00
Chr07	irgsp1_rep	mRNA	8828926	8830964	.	+	.	ID=Os07t0256700-01;Name=Os07t0256700-01;Locus_id=Os07g0256700;Oryzabase Gene Symbol Synonym(s)=OsTBL47%2C TBL47;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 47;Note=Protein of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=AK063314 (DDBJ%2C Best hit);ORF_evidence=A2X6R8 (UniProt);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=001-113-G06;Oryzabase=21502;Expression=AK063314;TENOR=Os07t0256700-01;KEGG=Os07t0256700-01
Chr07	irgsp1_rep	five_prime_UTR	8828926	8828996	.	+	.	Parent=Os07t0256700-01
Chr07	irgsp1_rep	CDS	8828997	8829220	.	+	0	Parent=Os07t0256700-01
Chr07	irgsp1_rep	CDS	8829773	8830871	.	+	1	Parent=Os07t0256700-01
Chr07	irgsp1_rep	three_prime_UTR	8830872	8830964	.	+	.	Parent=Os07t0256700-01
Chr07	irgsp1_rep	mRNA	8845266	8857772	.	+	.	ID=Os07t0256866-00;Name=Os07t0256866-00;Locus_id=Os07g0256866;Note=Hypothetical gene.;Transcript_evidence=CT836065 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os07t0256866-00;KEGG=Os07t0256866-00
Chr07	irgsp1_rep	five_prime_UTR	8845266	8845267	.	+	.	Parent=Os07t0256866-00
Chr07	irgsp1_rep	CDS	8845268	8845549	.	+	0	Parent=Os07t0256866-00
Chr07	irgsp1_rep	three_prime_UTR	8845550	8845703	.	+	.	Parent=Os07t0256866-00
Chr07	irgsp1_rep	three_prime_UTR	8857294	8857772	.	+	.	Parent=Os07t0256866-00
Chr07	irgsp1_rep	mRNA	8871643	8878905	.	-	.	ID=Os07t0257200-01;Name=Os07t0257200-01;Locus_id=Os07g0257200;RAP-DB Gene Symbol Synonym(s)=NRAMP5%2C OsNRAMP5%2C OsNramp5;RAP-DB Gene Name Synonym(s)=NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 5%2C BACTERIOCIDE EFFECT 5;CGSNL Gene Symbol=LCD1;CGSNL Gene Name=LOW CADMIUM ACCUMULATION 1;Oryzabase Gene Symbol Synonym(s)=NRAMP5%2C OsNRAMP5%2C OsNramp5%2C OsLCD1;Oryzabase Gene Name Synonym(s)=BACTERIOCIDE EFFECT 5%2C NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 5%2C low cadmium accumulation 1;Note=Manganese and Cadmium transporter%2C Mn and Cd uptake;Transcript_evidence=AB698459 (Zhonghua11),AK070788;ORF_evidence=Q8H4H5,I7GYG6;GO=Biological Process: transport (GO:0006810),Molecular Function: transporter activity (GO:0005215),Cellular Component: membrane (GO:0016020);InterPro=NRAMP family (IPR001046);NIAS_FLcDNA=J023064O13;Manual Curation=September 5%2C 2014;Literature_PMID=22589467;Oryzabase=8329;TENOR=Os07t0257200-01;KEGG=Os07t0257200-01
Chr07	irgsp1_rep	five_prime_UTR	8878810	8878905	.	-	.	Parent=Os07t0257200-01
Chr07	irgsp1_rep	CDS	8878699	8878809	.	-	0	Parent=Os07t0257200-01
Chr07	irgsp1_rep	CDS	8878354	8878432	.	-	0	Parent=Os07t0257200-01
Chr07	irgsp1_rep	CDS	8878185	8878225	.	-	2	Parent=Os07t0257200-01
Chr07	irgsp1_rep	CDS	8877808	8877886	.	-	0	Parent=Os07t0257200-01
Chr07	irgsp1_rep	CDS	8877621	8877725	.	-	2	Parent=Os07t0257200-01
Chr07	irgsp1_rep	CDS	8876512	8876621	.	-	2	Parent=Os07t0257200-01
Chr07	irgsp1_rep	CDS	8876106	8876287	.	-	0	Parent=Os07t0257200-01
Chr07	irgsp1_rep	CDS	8875937	8876006	.	-	1	Parent=Os07t0257200-01
Chr07	irgsp1_rep	CDS	8875473	8875646	.	-	0	Parent=Os07t0257200-01
Chr07	irgsp1_rep	CDS	8875087	8875191	.	-	0	Parent=Os07t0257200-01
Chr07	irgsp1_rep	CDS	8873969	8874100	.	-	0	Parent=Os07t0257200-01
Chr07	irgsp1_rep	CDS	8873278	8873373	.	-	0	Parent=Os07t0257200-01
Chr07	irgsp1_rep	CDS	8871936	8872268	.	-	0	Parent=Os07t0257200-01
Chr07	irgsp1_rep	three_prime_UTR	8871643	8871935	.	-	.	Parent=Os07t0257200-01
Chr07	irgsp1_rep	mRNA	8872055	8875195	.	+	.	ID=Os07t0257400-00;Name=Os07t0257400-00;Locus_id=Os07g0257400;Note=Hypothetical protein.;Transcript_evidence=BT086902 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0257400-00
Chr07	irgsp1_rep	five_prime_UTR	8872055	8872055	.	+	.	Parent=Os07t0257400-00
Chr07	irgsp1_rep	CDS	8872056	8872268	.	+	0	Parent=Os07t0257400-00
Chr07	irgsp1_rep	CDS	8873278	8873472	.	+	0	Parent=Os07t0257400-00
Chr07	irgsp1_rep	three_prime_UTR	8873473	8873490	.	+	.	Parent=Os07t0257400-00
Chr07	irgsp1_rep	three_prime_UTR	8873974	8874099	.	+	.	Parent=Os07t0257400-00
Chr07	irgsp1_rep	three_prime_UTR	8875086	8875195	.	+	.	Parent=Os07t0257400-00
Chr07	irgsp1_rep	mRNA	8906263	8906953	.	+	.	ID=Os07t0257600-00;Name=Os07t0257600-00;Locus_id=Os07g0257600;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);TENOR=Os07t0257600-00
Chr07	irgsp1_rep	five_prime_UTR	8906263	8906618	.	+	.	Parent=Os07t0257600-00
Chr07	irgsp1_rep	CDS	8906619	8906912	.	+	0	Parent=Os07t0257600-00
Chr07	irgsp1_rep	three_prime_UTR	8906913	8906953	.	+	.	Parent=Os07t0257600-00
Chr07	irgsp1_rep	mRNA	8911249	8912002	.	-	.	ID=Os07t0257800-00;Name=Os07t0257800-00;Locus_id=Os07g0257800;Note=Conserved hypothetical protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q7XWB3 (UniProt);TENOR=Os07t0257800-00
Chr07	irgsp1_rep	CDS	8911685	8912002	.	-	0	Parent=Os07t0257800-00
Chr07	irgsp1_rep	three_prime_UTR	8911249	8911684	.	-	.	Parent=Os07t0257800-00
Chr07	irgsp1_rep	mRNA	8926134	8928872	.	+	.	ID=Os07t0258000-01;Name=Os07t0258000-01;Locus_id=Os07g0258000;Note=Domain of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK109782 (DDBJ%2C Best hit);ORF_evidence=B9FWG8 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=002-147-C06;Expression=AK109782;TENOR=Os07t0258000-01;KEGG=Os07t0258000-01
Chr07	irgsp1_rep	five_prime_UTR	8926134	8926159	.	+	.	Parent=Os07t0258000-01
Chr07	irgsp1_rep	CDS	8926160	8927146	.	+	0	Parent=Os07t0258000-01
Chr07	irgsp1_rep	three_prime_UTR	8927147	8927516	.	+	.	Parent=Os07t0258000-01
Chr07	irgsp1_rep	three_prime_UTR	8928526	8928872	.	+	.	Parent=Os07t0258000-01
Chr07	irgsp1_rep	mRNA	8930095	8931923	.	-	.	ID=Os07t0258100-01;Name=Os07t0258100-01;Locus_id=Os07g0258100;Note=Conserved hypothetical protein.;Transcript_evidence=AK064037 (DDBJ%2C Best hit);ORF_evidence=B9FWG9 (UniProt);NIAS_FLcDNA=001-125-C09;TENOR=Os07t0258100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	8931923	8931923	.	-	.	Parent=Os07t0258100-01
Chr07	irgsp1_rep	CDS	8931834	8931922	.	-	0	Parent=Os07t0258100-01
Chr07	irgsp1_rep	CDS	8930911	8931748	.	-	1	Parent=Os07t0258100-01
Chr07	irgsp1_rep	CDS	8930674	8930834	.	-	0	Parent=Os07t0258100-01
Chr07	irgsp1_rep	CDS	8930546	8930591	.	-	1	Parent=Os07t0258100-01
Chr07	irgsp1_rep	three_prime_UTR	8930519	8930545	.	-	.	Parent=Os07t0258100-01
Chr07	irgsp1_rep	three_prime_UTR	8930095	8930427	.	-	.	Parent=Os07t0258100-01
Chr07	irgsp1_rep	mRNA	8966025	8970856	.	+	.	ID=Os07t0258400-01;Name=Os07t0258400-01;Locus_id=Os07g0258400;CGSNL Gene Symbol=NRAMP1;CGSNL Gene Name=BACTERIOCIDE EFFECT 1;Oryzabase Gene Symbol Synonym(s)=OsNramp1%2C OsNRAMP1%2C OsNramp6;Oryzabase Gene Name Synonym(s)=homologues of mammalian Nramp1 gene;Note=OsNramp1 (Integral membrane protein).;Transcript_evidence=AK121534 (DDBJ%2C Best hit);ORF_evidence=Q0D7E4 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Natural resistance-associated macrophage protein (IPR001046);NIAS_FLcDNA=J033031A07;Oryzabase=6243;Expression=AK121534;TENOR=Os07t0258400-01;KEGG=Os07t0258400-01
Chr07	irgsp1_rep	five_prime_UTR	8966025	8966108	.	+	.	Parent=Os07t0258400-01
Chr07	irgsp1_rep	CDS	8966109	8966192	.	+	0	Parent=Os07t0258400-01
Chr07	irgsp1_rep	CDS	8967237	8967315	.	+	0	Parent=Os07t0258400-01
Chr07	irgsp1_rep	CDS	8967385	8967425	.	+	2	Parent=Os07t0258400-01
Chr07	irgsp1_rep	CDS	8967557	8967635	.	+	0	Parent=Os07t0258400-01
Chr07	irgsp1_rep	CDS	8967717	8967821	.	+	2	Parent=Os07t0258400-01
Chr07	irgsp1_rep	CDS	8968062	8968171	.	+	2	Parent=Os07t0258400-01
Chr07	irgsp1_rep	CDS	8968353	8968534	.	+	0	Parent=Os07t0258400-01
Chr07	irgsp1_rep	CDS	8968752	8968821	.	+	1	Parent=Os07t0258400-01
Chr07	irgsp1_rep	CDS	8968909	8969082	.	+	0	Parent=Os07t0258400-01
Chr07	irgsp1_rep	CDS	8969216	8969320	.	+	0	Parent=Os07t0258400-01
Chr07	irgsp1_rep	CDS	8969527	8969658	.	+	0	Parent=Os07t0258400-01
Chr07	irgsp1_rep	CDS	8969905	8970000	.	+	0	Parent=Os07t0258400-01
Chr07	irgsp1_rep	CDS	8970116	8970415	.	+	0	Parent=Os07t0258400-01
Chr07	irgsp1_rep	three_prime_UTR	8970416	8970856	.	+	.	Parent=Os07t0258400-01
Chr07	irgsp1_rep	mRNA	8968077	8970620	.	+	.	ID=Os07t0258400-02;Name=Os07t0258400-02;Locus_id=Os07g0258400;CGSNL Gene Symbol=NRAMP1;CGSNL Gene Name=BACTERIOCIDE EFFECT 1;Oryzabase Gene Symbol Synonym(s)=OsNramp1%2C OsNRAMP1%2C OsNramp6;Oryzabase Gene Name Synonym(s)=homologues of mammalian Nramp1 gene;Note=Similar to Metal transporter.;Transcript_evidence=AK103557 (DDBJ%2C Best hit);ORF_evidence=Q0D7E4 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Natural resistance-associated macrophage protein (IPR001046);NIAS_FLcDNA=J033132H19;Oryzabase=6243;Expression=AK103557;TENOR=Os07t0258400-02;KEGG=Os07t0258400-02
Chr07	irgsp1_rep	five_prime_UTR	8968077	8968078	.	+	.	Parent=Os07t0258400-02
Chr07	irgsp1_rep	CDS	8968079	8968171	.	+	0	Parent=Os07t0258400-02
Chr07	irgsp1_rep	CDS	8968353	8968534	.	+	0	Parent=Os07t0258400-02
Chr07	irgsp1_rep	CDS	8968752	8968821	.	+	1	Parent=Os07t0258400-02
Chr07	irgsp1_rep	CDS	8968909	8969082	.	+	0	Parent=Os07t0258400-02
Chr07	irgsp1_rep	CDS	8969216	8969320	.	+	0	Parent=Os07t0258400-02
Chr07	irgsp1_rep	CDS	8969527	8969658	.	+	0	Parent=Os07t0258400-02
Chr07	irgsp1_rep	CDS	8969905	8970000	.	+	0	Parent=Os07t0258400-02
Chr07	irgsp1_rep	CDS	8970116	8970415	.	+	0	Parent=Os07t0258400-02
Chr07	irgsp1_rep	three_prime_UTR	8970416	8970620	.	+	.	Parent=Os07t0258400-02
Chr07	irgsp1_rep	mRNA	8966032	8970880	.	+	.	ID=Os07t0258400-03;Name=Os07t0258400-03;Locus_id=Os07g0258400;RAP-DB Gene Symbol Synonym(s)=NRAMP1%2C OsNramp1%2C OsNRAMP1;RAP-DB Gene Name Synonym(s)=BACTERIOCIDE EFFECT 1%2C Oryza sativa natural resistance-associated macrophage protein 1%2C homologues of mammalian Nramp1 gene;CGSNL Gene Symbol=NRAMP1;CGSNL Gene Name=BACTERIOCIDE EFFECT 1;Oryzabase Gene Symbol Synonym(s)=OsNramp1%2C OsNRAMP1%2C OsNramp6;Oryzabase Gene Name Synonym(s)=homologues of mammalian Nramp1 gene;Note=Integral membrane protein%2C Metal ion transport;Transcript_evidence=L41217 (Genbank),S81697 (Genbank);ORF_evidence=Q41268 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Natural resistance-associated macrophage protein (IPR001046);Manual Curation=August 2%2C 2009;Literature_PMID=8616217,9154989;Oryzabase=6243
Chr07	irgsp1_rep	five_prime_UTR	8966032	8966108	.	+	.	Parent=Os07t0258400-03
Chr07	irgsp1_rep	CDS	8966109	8966192	.	+	0	Parent=Os07t0258400-03
Chr07	irgsp1_rep	CDS	8967237	8967315	.	+	0	Parent=Os07t0258400-03
Chr07	irgsp1_rep	CDS	8967385	8967425	.	+	2	Parent=Os07t0258400-03
Chr07	irgsp1_rep	CDS	8967557	8967635	.	+	0	Parent=Os07t0258400-03
Chr07	irgsp1_rep	CDS	8967717	8967821	.	+	2	Parent=Os07t0258400-03
Chr07	irgsp1_rep	CDS	8968062	8968171	.	+	2	Parent=Os07t0258400-03
Chr07	irgsp1_rep	CDS	8968353	8968534	.	+	0	Parent=Os07t0258400-03
Chr07	irgsp1_rep	CDS	8968752	8968821	.	+	1	Parent=Os07t0258400-03
Chr07	irgsp1_rep	CDS	8968909	8969082	.	+	0	Parent=Os07t0258400-03
Chr07	irgsp1_rep	CDS	8969216	8969320	.	+	0	Parent=Os07t0258400-03
Chr07	irgsp1_rep	CDS	8969527	8969658	.	+	0	Parent=Os07t0258400-03
Chr07	irgsp1_rep	CDS	8969905	8970000	.	+	0	Parent=Os07t0258400-03
Chr07	irgsp1_rep	CDS	8970116	8970415	.	+	0	Parent=Os07t0258400-03
Chr07	irgsp1_rep	three_prime_UTR	8970416	8970712	.	+	.	Parent=Os07t0258400-03
Chr07	irgsp1_rep	three_prime_UTR	8970827	8970880	.	+	.	Parent=Os07t0258400-03
Chr07	irgsp1_rep	mRNA	8969212	8970359	.	-	.	ID=Os07t0258501-00;Name=Os07t0258501-00;Locus_id=Os07g0258501;Note=Hypothetical protein.;Transcript_evidence=BT086902 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0258501-00
Chr07	irgsp1_rep	five_prime_UTR	8970110	8970359	.	-	.	Parent=Os07t0258501-00
Chr07	irgsp1_rep	five_prime_UTR	8969866	8969996	.	-	.	Parent=Os07t0258501-00
Chr07	irgsp1_rep	five_prime_UTR	8969712	8969750	.	-	.	Parent=Os07t0258501-00
Chr07	irgsp1_rep	CDS	8969501	8969711	.	-	0	Parent=Os07t0258501-00
Chr07	irgsp1_rep	CDS	8969212	8969294	.	-	2	Parent=Os07t0258501-00
Chr07	irgsp1_rep	mRNA	8989136	8992724	.	+	.	ID=Os07t0258700-01;Name=Os07t0258700-01;Locus_id=Os07g0258700;Note=BTB domain containing protein.;Transcript_evidence=AK068718 (DDBJ%2C Best hit),AK069407 (DDBJ%2C Best hit),AK106061 (DDBJ%2C Best hit);ORF_evidence=B4FQB1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069);NIAS_FLcDNA=J013166G07,J023015F07,001-206-G01;Expression=AK068718;TENOR=Os07t0258700-01;KEGG=Os07t0258700-01
Chr07	irgsp1_rep	five_prime_UTR	8989136	8989237	.	+	.	Parent=Os07t0258700-01
Chr07	irgsp1_rep	CDS	8989238	8989501	.	+	0	Parent=Os07t0258700-01
Chr07	irgsp1_rep	CDS	8992057	8992533	.	+	0	Parent=Os07t0258700-01
Chr07	irgsp1_rep	three_prime_UTR	8992534	8992724	.	+	.	Parent=Os07t0258700-01
Chr07	irgsp1_rep	mRNA	8993952	8997189	.	-	.	ID=Os07t0258800-00;Name=Os07t0258800-00;Locus_id=Os07g0258800;Note=Conserved hypothetical protein.;Transcript_evidence=BT039215 (DDBJ);ORF_evidence=NP_001175124.1 (RefSeq);TENOR=Os07t0258800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	8997189	8997189	.	-	.	Parent=Os07t0258800-00
Chr07	irgsp1_rep	CDS	8996876	8997188	.	-	0	Parent=Os07t0258800-00
Chr07	irgsp1_rep	CDS	8996720	8996788	.	-	2	Parent=Os07t0258800-00
Chr07	irgsp1_rep	CDS	8996572	8996615	.	-	2	Parent=Os07t0258800-00
Chr07	irgsp1_rep	three_prime_UTR	8996553	8996571	.	-	.	Parent=Os07t0258800-00
Chr07	irgsp1_rep	three_prime_UTR	8995966	8996037	.	-	.	Parent=Os07t0258800-00
Chr07	irgsp1_rep	three_prime_UTR	8995551	8995879	.	-	.	Parent=Os07t0258800-00
Chr07	irgsp1_rep	three_prime_UTR	8994483	8994615	.	-	.	Parent=Os07t0258800-00
Chr07	irgsp1_rep	three_prime_UTR	8993952	8994161	.	-	.	Parent=Os07t0258800-00
Chr07	irgsp1_rep	mRNA	9003789	9004362	.	-	.	ID=Os07t0259000-01;Name=Os07t0259000-01;Locus_id=Os07g0259000;Note=Conserved hypothetical protein.;Transcript_evidence=AK106951 (DDBJ%2C Best hit);ORF_evidence=B9FWH3 (UniProt);NIAS_FLcDNA=002-119-E04;Expression=AK106951;TENOR=Os07t0259000-01;KEGG=Os07t0259000-01
Chr07	irgsp1_rep	five_prime_UTR	9004238	9004362	.	-	.	Parent=Os07t0259000-01
Chr07	irgsp1_rep	CDS	9003992	9004237	.	-	0	Parent=Os07t0259000-01
Chr07	irgsp1_rep	three_prime_UTR	9003789	9003991	.	-	.	Parent=Os07t0259000-01
Chr07	irgsp1_rep	mRNA	9005204	9008484	.	-	.	ID=Os07t0259100-01;Name=Os07t0259100-01;Locus_id=Os07g0259100;RAP-DB Gene Symbol Synonym(s)=ETR4%2C PK3%2C OsPK3%2C OsETR4%2C OS-ETR4;RAP-DB Gene Name Synonym(s)=ETHYLENE RESPONSE 4%2C subfamily I ethylene receptor;CGSNL Gene Symbol=ETR4;CGSNL Gene Name=ETHYLENE RESPONSE 4;Oryzabase Gene Symbol Synonym(s)=PK3%2C OsPK3%2C OsETR4%2C OS-ETR4;Oryzabase Gene Name Synonym(s)=subfamily I ethylene receptor;Note=Ethylene receptor%2C Ethylene response;Transcript_evidence=AF497626 (Genbank),AK109593 (Genbank);ORF_evidence=Q71HN7 (UniProt),Q7F239 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: signal transduction (GO:0007165),Biological Process: ethylene mediated signaling pathway (GO:0009873),Cellular Component: endoplasmic reticulum membrane (GO:0005789),Cellular Component: membrane (GO:0016020),Molecular Function: two-component sensor activity (GO:0000155),Molecular Function: two-component response regulator activity (GO:0000156),Molecular Function: protein histidine kinase activity (GO:0004673),Molecular Function: protein binding (GO:0005515);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),GAF domain (IPR003018),Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain (IPR003661),CheY-like superfamily (IPR011006),Signal transduction histidine kinase%2C hybrid-type%2C ethylene sensor (IPR014525);NIAS_FLcDNA=002-137-C08;Manual Curation=June 1%2C 2009;Literature_PMID=19417056;Oryzabase=9017;Expression=AK109593;TENOR=Os07t0259100-01;KEGG=Os07t0259100-01
Chr07	irgsp1_rep	five_prime_UTR	9008471	9008484	.	-	.	Parent=Os07t0259100-01
Chr07	irgsp1_rep	CDS	9006674	9008470	.	-	0	Parent=Os07t0259100-01
Chr07	irgsp1_rep	CDS	9005532	9006068	.	-	0	Parent=Os07t0259100-01
Chr07	irgsp1_rep	three_prime_UTR	9005204	9005531	.	-	.	Parent=Os07t0259100-01
Chr07	irgsp1_rep	mRNA	9022181	9023849	.	+	.	ID=Os07t0259400-00;Name=Os07t0259400-00;Locus_id=Os07g0259400;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=EU972012 (DDBJ);ORF_evidence=NP_001059320.2 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os07t0259400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	9022181	9022283	.	+	.	Parent=Os07t0259400-00
Chr07	irgsp1_rep	CDS	9022284	9023849	.	+	0	Parent=Os07t0259400-00
Chr07	irgsp1_rep	mRNA	9022197	9023744	.	-	.	ID=Os07t0259450-00;Name=Os07t0259450-00;Locus_id=Os07g0259450;Note=Hypothetical protein.;Transcript_evidence=tplb0021n11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0259450-00
Chr07	irgsp1_rep	five_prime_UTR	9022850	9023744	.	-	.	Parent=Os07t0259450-00
Chr07	irgsp1_rep	CDS	9022728	9022849	.	-	0	Parent=Os07t0259450-00
Chr07	irgsp1_rep	CDS	9022197	9022584	.	-	1	Parent=Os07t0259450-00
Chr07	irgsp1_rep	mRNA	9036095	9039223	.	-	.	ID=Os07t0259700-01;Name=Os07t0259700-01;Locus_id=Os07g0259700;Note=Similar to PRLI-interacting factor G (Fragment).;Transcript_evidence=AK067947 (DDBJ%2C Best hit);ORF_evidence=A6MZD1 (UniProt);NIAS_FLcDNA=J013124I12;Expression=AK067947;TENOR=Os07t0259700-01;KEGG=Os07t0259700-01
Chr07	irgsp1_rep	five_prime_UTR	9039083	9039223	.	-	.	Parent=Os07t0259700-01
Chr07	irgsp1_rep	CDS	9038315	9039082	.	-	0	Parent=Os07t0259700-01
Chr07	irgsp1_rep	CDS	9036272	9037198	.	-	0	Parent=Os07t0259700-01
Chr07	irgsp1_rep	three_prime_UTR	9036095	9036271	.	-	.	Parent=Os07t0259700-01
Chr07	irgsp1_rep	mRNA	9075904	9077790	.	-	.	ID=Os07t0260000-00;Name=Os07t0260000-00;Locus_id=Os07g0260000;Oryzabase Gene Symbol Synonym(s)=PPR;Oryzabase Gene Name Synonym(s)=Pentatricopeptide repeat (PPR) protein;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK372160 (DDBJ);ORF_evidence=Q8LIP4 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);Oryzabase=22520;TENOR=Os07t0260000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	9077459	9077790	.	-	0	Parent=Os07t0260000-00
Chr07	irgsp1_rep	CDS	9075904	9077020	.	-	1	Parent=Os07t0260000-00
Chr07	irgsp1_rep	mRNA	9099097	9102892	.	+	.	ID=Os07t0260300-01;Name=Os07t0260300-01;Locus_id=Os07g0260300;Note=Thioredoxin fold domain containing protein.;Transcript_evidence=AK066852 (DDBJ%2C Best hit);ORF_evidence=B6U038 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: antioxidant activity (GO:0016209),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant (IPR000866),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=J013077B21;Expression=AK066852;TENOR=Os07t0260300-01;KEGG=Os07t0260300-01
Chr07	irgsp1_rep	five_prime_UTR	9099097	9099143	.	+	.	Parent=Os07t0260300-01
Chr07	irgsp1_rep	CDS	9099144	9099389	.	+	0	Parent=Os07t0260300-01
Chr07	irgsp1_rep	CDS	9099495	9099560	.	+	0	Parent=Os07t0260300-01
Chr07	irgsp1_rep	CDS	9100276	9100356	.	+	0	Parent=Os07t0260300-01
Chr07	irgsp1_rep	CDS	9100432	9100485	.	+	0	Parent=Os07t0260300-01
Chr07	irgsp1_rep	CDS	9101257	9101325	.	+	0	Parent=Os07t0260300-01
Chr07	irgsp1_rep	CDS	9101424	9101486	.	+	0	Parent=Os07t0260300-01
Chr07	irgsp1_rep	CDS	9102102	9102184	.	+	0	Parent=Os07t0260300-01
Chr07	irgsp1_rep	CDS	9102258	9102323	.	+	1	Parent=Os07t0260300-01
Chr07	irgsp1_rep	CDS	9102419	9102449	.	+	1	Parent=Os07t0260300-01
Chr07	irgsp1_rep	three_prime_UTR	9102450	9102892	.	+	.	Parent=Os07t0260300-01
Chr07	irgsp1_rep	mRNA	9105495	9112919	.	-	.	ID=Os07t0260400-01;Name=Os07t0260400-01;Locus_id=Os07g0260400;CGSNL Gene Symbol=PLDdelta3;CGSNL Gene Name=PHOSPHOLIPASE D delta 3;Oryzabase Gene Symbol Synonym(s)=OsPLDdelta3%2C OsPLDnu2;Oryzabase Gene Name Synonym(s)=phospholipase D nu 2;Note=Similar to Phospholipase D nu-2 (Fragment).;Transcript_evidence=AK070203 (DDBJ%2C Best hit);ORF_evidence=B8B515 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: phosphatidylcholine metabolic process (GO:0046470),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phospholipase D activity (GO:0004630),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),Phospholipase D/Transphosphatidylase (IPR001736),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),Phospholipase D%2C plant (IPR011402),Phospholipase D (IPR015679),C2 membrane targeting protein (IPR018029),Phospholipase D%2C C-terminal (IPR024632);NIAS_FLcDNA=J023042B21;Oryzabase=8699;Expression=AK070203;TENOR=Os07t0260400-01;KEGG=Os07t0260400-01
Chr07	irgsp1_rep	five_prime_UTR	9112869	9112919	.	-	.	Parent=Os07t0260400-01
Chr07	irgsp1_rep	five_prime_UTR	9112562	9112799	.	-	.	Parent=Os07t0260400-01
Chr07	irgsp1_rep	five_prime_UTR	9112321	9112444	.	-	.	Parent=Os07t0260400-01
Chr07	irgsp1_rep	CDS	9111400	9112320	.	-	0	Parent=Os07t0260400-01
Chr07	irgsp1_rep	CDS	9110775	9110891	.	-	0	Parent=Os07t0260400-01
Chr07	irgsp1_rep	CDS	9109341	9109535	.	-	0	Parent=Os07t0260400-01
Chr07	irgsp1_rep	CDS	9108670	9108930	.	-	0	Parent=Os07t0260400-01
Chr07	irgsp1_rep	CDS	9108502	9108570	.	-	0	Parent=Os07t0260400-01
Chr07	irgsp1_rep	CDS	9108206	9108353	.	-	0	Parent=Os07t0260400-01
Chr07	irgsp1_rep	CDS	9107705	9107853	.	-	2	Parent=Os07t0260400-01
Chr07	irgsp1_rep	CDS	9107393	9107557	.	-	0	Parent=Os07t0260400-01
Chr07	irgsp1_rep	CDS	9106940	9107138	.	-	0	Parent=Os07t0260400-01
Chr07	irgsp1_rep	CDS	9105843	9106135	.	-	2	Parent=Os07t0260400-01
Chr07	irgsp1_rep	three_prime_UTR	9105495	9105842	.	-	.	Parent=Os07t0260400-01
Chr07	irgsp1_rep	mRNA	9152377	9155030	.	-	.	ID=Os07t0261200-01;Name=Os07t0261200-01;Locus_id=Os07g0261200;RAP-DB Gene Symbol Synonym(s)=GHD7%2C Ghd2%2C Ghd7%2C OsCCT26%2C OsCMF8%2C OsI;RAP-DB Gene Name Synonym(s)=HEADING DATE 7%2C heading date 7%2C "Grain number%2C plant height%2C and heading date 7"%2C "GRAIN NUMBER%2C PLANT HEIGHT AND HEADING DATE 7"%2C  CCT domain-containing gene 26%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 26%2C CCT domain protein 26%2C CCT MOTIF FAMILY (CMF) gene 8;CGSNL Gene Symbol=GHD7;CGSNL Gene Name=HEADING DATE 7;Oryzabase Gene Symbol Synonym(s)=Ghd2%2C Ghd7%2C OsCCT26%2C OsCMF8%2C OsI%2C Ghd7/Hd4%2C Hd4%2C EH7-1/Hd4%2C Ghd7-0a%2C EH7-1%2C EH7/Ghd7%2C EH7%2C OsEH7;Oryzabase Gene Name Synonym(s)=heading date 7%2C "Grain number%2C plant height%2C and heading date7"%2C "GRAIN NUMBER%2C PLANT HEIGHT AND HEADING DATE 7"%2C CCT domain-containing gene 26%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 26%2C CCT domain protein 26%2C CCT MOTIF FAMILY (CMF) gene 8%2C Early heading 7;Note=CCT(CONSTANS%2C CONSTANS-LIKE%2C and TIMING OF CHLOROPHYLL A/B BINDING1)  domain protein%2C Heading date%2C Long-day repression%2C Regulator of growth%2C development%2C and stress-response;Transcript_evidence=EU286800 (Minghui 63);ORF_evidence=B2KYD3,G3GJX4;GO=Molecular Function: protein binding (GO:0005515);InterPro=CCT domain (IPR010402);Manual Curation=May 19%2C 2014;Literature_PMID=18454147,20543848,24390391;Oryzabase=8136;TENOR=Os07t0261200-00
Chr07	irgsp1_rep	five_prime_UTR	9154821	9155030	.	-	.	Parent=Os07t0261200-01
Chr07	irgsp1_rep	CDS	9154377	9154820	.	-	0	Parent=Os07t0261200-01
Chr07	irgsp1_rep	CDS	9152402	9152731	.	-	0	Parent=Os07t0261200-01
Chr07	irgsp1_rep	three_prime_UTR	9152377	9152401	.	-	.	Parent=Os07t0261200-01
Chr07	irgsp1_rep	mRNA	9207189	9207535	.	-	.	ID=Os07t0261732-00;Name=Os07t0261732-00;Locus_id=Os07g0261732;Note=Similar to 10A19I.4.;Transcript_evidence=BT034152 (DDBJ);ORF_evidence=Q9XHW2 (UniProt);TENOR=Os07t0261732-00
Chr07	irgsp1_rep	CDS	9207398	9207535	.	-	0	Parent=Os07t0261732-00
Chr07	irgsp1_rep	three_prime_UTR	9207189	9207397	.	-	.	Parent=Os07t0261732-00
Chr07	irgsp1_rep	mRNA	9221537	9227207	.	-	.	ID=Os07t0262200-02;Name=Os07t0262200-02;Locus_id=Os07g0262200;RAP-DB Gene Symbol Synonym(s)=NAL8;RAP-DB Gene Name Synonym(s)=narrow leaf 8;CGSNL Gene Symbol=NAL8;CGSNL Gene Name=NARROW LEAF 8;Oryzabase Gene Symbol Synonym(s)=OsNAL8;Oryzabase Gene Name Synonym(s)=narrow leaf 8;Note=Prohibitin complex 2&alpha%3B subunit%2C Regulation of leaf morphology and spikelet number%2C Regulation of mitochondria and chloroplasts stability%2C Regulation of photosynthetic efficiency and cell division;Transcript_evidence=AK071615,AK104133;ORF_evidence=Q7EYR6;GO=Cellular Component: membrane (GO:0016020);InterPro=Band 7/SPFH domain superfamily (IPR036013),Prohibitin (IPR000163),Band 7 domain (IPR001107);NIAS_FLcDNA=J023105D05,006-204-E01;Manual Curation=September 19%2C 2019;Literature_PMID=31510917;Oryzabase=23301;Expression=AK071615;TENOR=Os07t0262200-02;KEGG=Os07t0262200-02
Chr07	irgsp1_rep	five_prime_UTR	9227112	9227207	.	-	.	Parent=Os07t0262200-02
Chr07	irgsp1_rep	CDS	9226938	9227111	.	-	0	Parent=Os07t0262200-02
Chr07	irgsp1_rep	CDS	9223586	9223702	.	-	0	Parent=Os07t0262200-02
Chr07	irgsp1_rep	CDS	9222431	9222601	.	-	0	Parent=Os07t0262200-02
Chr07	irgsp1_rep	CDS	9222114	9222326	.	-	0	Parent=Os07t0262200-02
Chr07	irgsp1_rep	CDS	9221779	9221973	.	-	0	Parent=Os07t0262200-02
Chr07	irgsp1_rep	three_prime_UTR	9221537	9221778	.	-	.	Parent=Os07t0262200-02
Chr07	irgsp1_rep	mRNA	9239129	9242275	.	-	.	ID=Os07t0262300-00;Name=Os07t0262300-00;Locus_id=Os07g0262300;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0007p15 (Wheat FLcDNA);ORF_evidence=NP_001063061.1 (RefSeq);TENOR=Os07t0262300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	9241842	9242275	.	-	0	Parent=Os07t0262300-00
Chr07	irgsp1_rep	CDS	9239310	9239389	.	-	1	Parent=Os07t0262300-00
Chr07	irgsp1_rep	CDS	9239216	9239217	.	-	2	Parent=Os07t0262300-00
Chr07	irgsp1_rep	three_prime_UTR	9239129	9239215	.	-	.	Parent=Os07t0262300-00
Chr07	irgsp1_rep	mRNA	9252350	9254375	.	+	.	ID=Os07t0262600-00;Name=Os07t0262600-00;Locus_id=Os07g0262600;CGSNL Gene Symbol=RLCK226;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 226;Oryzabase Gene Symbol Synonym(s)=OsRLCK226;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 226;Note=Legume lectin%2C beta chain domain containing protein.;Transcript_evidence=AK361888 (DDBJ);ORF_evidence=GeneMark;GO=Molecular Function: binding (GO:0005488);InterPro=Legume lectin%2C beta chain (IPR001220),Concanavalin A-like lectin/glucanase (IPR008985),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320);Oryzabase=18921;TENOR=Os07t0262600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	9252350	9253174	.	+	0	Parent=Os07t0262600-00
Chr07	irgsp1_rep	three_prime_UTR	9253175	9254375	.	+	.	Parent=Os07t0262600-00
Chr07	irgsp1_rep	mRNA	9252390	9254389	.	-	.	ID=Os07t0262700-00;Name=Os07t0262700-00;Locus_id=Os07g0262700;Note=Hypothetical protein.;Transcript_evidence=tplb0031l02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0262700-00
Chr07	irgsp1_rep	five_prime_UTR	9254377	9254389	.	-	.	Parent=Os07t0262700-00
Chr07	irgsp1_rep	CDS	9253846	9254376	.	-	0	Parent=Os07t0262700-00
Chr07	irgsp1_rep	three_prime_UTR	9252390	9253845	.	-	.	Parent=Os07t0262700-00
Chr07	irgsp1_rep	mRNA	9260544	9262830	.	-	.	ID=Os07t0262800-01;Name=Os07t0262800-01;Locus_id=Os07g0262800;Note=Similar to Resistance protein candidate (Fragment).;Transcript_evidence=AK120208 (DDBJ%2C Best hit);ORF_evidence=B9FWI2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013038K24;Expression=AK120208;TENOR=Os07t0262800-01;KEGG=Os07t0262800-01
Chr07	irgsp1_rep	five_prime_UTR	9261531	9262830	.	-	.	Parent=Os07t0262800-01
Chr07	irgsp1_rep	CDS	9260733	9261530	.	-	0	Parent=Os07t0262800-01
Chr07	irgsp1_rep	three_prime_UTR	9260544	9260732	.	-	.	Parent=Os07t0262800-01
Chr07	irgsp1_rep	mRNA	9298577	9300441	.	+	.	ID=Os07t0263400-00;Name=Os07t0263400-00;Locus_id=Os07g0263400;Note=Similar to oxidoreductase family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=XP_002888861.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: cofactor binding (GO:0048037),Molecular Function: NAD binding (GO:0051287);InterPro=D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain (IPR006139),D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding (IPR006140),NAD(P)-binding domain (IPR016040);TENOR=Os07t0263400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	9298577	9298760	.	+	0	Parent=Os07t0263400-00
Chr07	irgsp1_rep	CDS	9298849	9298976	.	+	2	Parent=Os07t0263400-00
Chr07	irgsp1_rep	CDS	9299368	9299439	.	+	0	Parent=Os07t0263400-00
Chr07	irgsp1_rep	CDS	9299532	9299646	.	+	0	Parent=Os07t0263400-00
Chr07	irgsp1_rep	CDS	9299724	9299794	.	+	2	Parent=Os07t0263400-00
Chr07	irgsp1_rep	CDS	9299911	9299952	.	+	0	Parent=Os07t0263400-00
Chr07	irgsp1_rep	CDS	9300199	9300441	.	+	0	Parent=Os07t0263400-00
Chr07	irgsp1_rep	mRNA	9344631	9345581	.	+	.	ID=Os07t0264000-01;Name=Os07t0264000-01;Locus_id=Os07g0264000;Note=Conserved hypothetical protein.;Transcript_evidence=AK107969 (DDBJ%2C Best hit);ORF_evidence=Q5Z4N2 (UniProt);NIAS_FLcDNA=002-135-D05;Expression=AK107969;TENOR=Os07t0264000-01;KEGG=Os07t0264000-01
Chr07	irgsp1_rep	five_prime_UTR	9344631	9344632	.	+	.	Parent=Os07t0264000-01
Chr07	irgsp1_rep	CDS	9344633	9345160	.	+	0	Parent=Os07t0264000-01
Chr07	irgsp1_rep	three_prime_UTR	9345161	9345581	.	+	.	Parent=Os07t0264000-01
Chr07	irgsp1_rep	mRNA	9344672	9349361	.	+	.	ID=Os07t0264000-02;Name=Os07t0264000-02;Locus_id=Os07g0264000;Note=Conserved hypothetical protein.;Transcript_evidence=AK073038 (DDBJ%2C Best hit);ORF_evidence=B9FWF7 (UniProt);NIAS_FLcDNA=J033000B18;TENOR=Os07t0264000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	9344672	9345222	.	+	.	Parent=Os07t0264000-02
Chr07	irgsp1_rep	CDS	9345223	9345270	.	+	0	Parent=Os07t0264000-02
Chr07	irgsp1_rep	CDS	9345651	9345860	.	+	0	Parent=Os07t0264000-02
Chr07	irgsp1_rep	three_prime_UTR	9345861	9345872	.	+	.	Parent=Os07t0264000-02
Chr07	irgsp1_rep	three_prime_UTR	9345978	9346542	.	+	.	Parent=Os07t0264000-02
Chr07	irgsp1_rep	three_prime_UTR	9346639	9348119	.	+	.	Parent=Os07t0264000-02
Chr07	irgsp1_rep	three_prime_UTR	9349136	9349361	.	+	.	Parent=Os07t0264000-02
Chr07	irgsp1_rep	mRNA	9344681	9347547	.	+	.	ID=Os07t0264000-03;Name=Os07t0264000-03;Locus_id=Os07g0264000;Note=Conserved hypothetical protein.;Transcript_evidence=AK111419 (DDBJ%2C Best hit);ORF_evidence=B9FWF7 (UniProt);NIAS_FLcDNA=002-182-G07;Expression=AK111419;TENOR=Os07t0264000-03;KEGG=Os07t0264000-03
Chr07	irgsp1_rep	five_prime_UTR	9344681	9345222	.	+	.	Parent=Os07t0264000-03
Chr07	irgsp1_rep	CDS	9345223	9345270	.	+	0	Parent=Os07t0264000-03
Chr07	irgsp1_rep	CDS	9345651	9345860	.	+	0	Parent=Os07t0264000-03
Chr07	irgsp1_rep	three_prime_UTR	9345861	9345872	.	+	.	Parent=Os07t0264000-03
Chr07	irgsp1_rep	three_prime_UTR	9345978	9347547	.	+	.	Parent=Os07t0264000-03
Chr07	irgsp1_rep	mRNA	9344694	9349461	.	+	.	ID=Os07t0264000-04;Name=Os07t0264000-04;Locus_id=Os07g0264000;Note=Conserved hypothetical protein.;Transcript_evidence=AK072054 (DDBJ%2C Best hit);ORF_evidence=B9FWF7 (UniProt);NIAS_FLcDNA=J013112C01;Expression=AK072054;TENOR=Os07t0264000-04;KEGG=Os07t0264000-04
Chr07	irgsp1_rep	five_prime_UTR	9344694	9345222	.	+	.	Parent=Os07t0264000-04
Chr07	irgsp1_rep	CDS	9345223	9345270	.	+	0	Parent=Os07t0264000-04
Chr07	irgsp1_rep	CDS	9345651	9345860	.	+	0	Parent=Os07t0264000-04
Chr07	irgsp1_rep	three_prime_UTR	9345861	9345872	.	+	.	Parent=Os07t0264000-04
Chr07	irgsp1_rep	three_prime_UTR	9345978	9348119	.	+	.	Parent=Os07t0264000-04
Chr07	irgsp1_rep	three_prime_UTR	9349136	9349461	.	+	.	Parent=Os07t0264000-04
Chr07	irgsp1_rep	mRNA	9353167	9357704	.	+	.	ID=Os07t0264100-01;Name=Os07t0264100-01;Locus_id=Os07g0264100;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK065209 (DDBJ%2C Best hit),AK104560 (DDBJ%2C Best hit),AK104725 (DDBJ%2C Best hit);ORF_evidence=XP_002888861.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: cofactor binding (GO:0048037),Molecular Function: NAD binding (GO:0051287);InterPro=D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain (IPR006139),D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding (IPR006140),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013002F16,006-306-C01,001-038-B08;TENOR=Os07t0264100-01
Chr07	irgsp1_rep	five_prime_UTR	9353167	9353172	.	+	.	Parent=Os07t0264100-01
Chr07	irgsp1_rep	CDS	9353173	9353275	.	+	0	Parent=Os07t0264100-01
Chr07	irgsp1_rep	CDS	9354024	9354153	.	+	2	Parent=Os07t0264100-01
Chr07	irgsp1_rep	CDS	9354777	9354925	.	+	1	Parent=Os07t0264100-01
Chr07	irgsp1_rep	CDS	9355014	9355141	.	+	2	Parent=Os07t0264100-01
Chr07	irgsp1_rep	CDS	9355901	9355972	.	+	0	Parent=Os07t0264100-01
Chr07	irgsp1_rep	CDS	9356065	9356179	.	+	0	Parent=Os07t0264100-01
Chr07	irgsp1_rep	CDS	9356261	9356364	.	+	2	Parent=Os07t0264100-01
Chr07	irgsp1_rep	CDS	9356447	9356488	.	+	0	Parent=Os07t0264100-01
Chr07	irgsp1_rep	CDS	9356775	9356987	.	+	0	Parent=Os07t0264100-01
Chr07	irgsp1_rep	CDS	9357464	9357532	.	+	0	Parent=Os07t0264100-01
Chr07	irgsp1_rep	three_prime_UTR	9357533	9357704	.	+	.	Parent=Os07t0264100-01
Chr07	irgsp1_rep	mRNA	9395365	9397525	.	+	.	ID=Os07t0264800-01;Name=Os07t0264800-01;Locus_id=Os07g0264800;Note=Acyl-CoA N-acyltransferase domain containing protein.;Transcript_evidence=AK066403 (DDBJ%2C Best hit),AK104697 (DDBJ%2C Best hit);ORF_evidence=B6TUM7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: N-acetyltransferase activity (GO:0008080);InterPro=GCN5-related N-acetyltransferase (GNAT) domain (IPR000182),Acyl-CoA N-acyltransferase (IPR016181);NIAS_FLcDNA=J013062A11,001-037-B12;TENOR=Os07t0264800-01
Chr07	irgsp1_rep	five_prime_UTR	9395365	9395406	.	+	.	Parent=Os07t0264800-01
Chr07	irgsp1_rep	CDS	9395407	9395817	.	+	0	Parent=Os07t0264800-01
Chr07	irgsp1_rep	CDS	9395912	9395964	.	+	0	Parent=Os07t0264800-01
Chr07	irgsp1_rep	CDS	9396837	9397016	.	+	1	Parent=Os07t0264800-01
Chr07	irgsp1_rep	CDS	9397095	9397335	.	+	1	Parent=Os07t0264800-01
Chr07	irgsp1_rep	three_prime_UTR	9397336	9397525	.	+	.	Parent=Os07t0264800-01
Chr07	irgsp1_rep	mRNA	9399351	9403697	.	+	.	ID=Os07t0264900-01;Name=Os07t0264900-01;Locus_id=Os07g0264900;Note=Similar to FAD binding protein.;Transcript_evidence=AK071462 (DDBJ%2C Best hit);ORF_evidence=NP_001147378.1 (RefSeq);NIAS_FLcDNA=J023098M12;Expression=AK071462;TENOR=Os07t0264900-01;KEGG=Os07t0264900-01
Chr07	irgsp1_rep	five_prime_UTR	9399351	9399492	.	+	.	Parent=Os07t0264900-01
Chr07	irgsp1_rep	five_prime_UTR	9399616	9399715	.	+	.	Parent=Os07t0264900-01
Chr07	irgsp1_rep	five_prime_UTR	9400176	9400243	.	+	.	Parent=Os07t0264900-01
Chr07	irgsp1_rep	five_prime_UTR	9400332	9400361	.	+	.	Parent=Os07t0264900-01
Chr07	irgsp1_rep	five_prime_UTR	9401017	9401018	.	+	.	Parent=Os07t0264900-01
Chr07	irgsp1_rep	CDS	9401019	9401157	.	+	0	Parent=Os07t0264900-01
Chr07	irgsp1_rep	CDS	9402029	9402070	.	+	2	Parent=Os07t0264900-01
Chr07	irgsp1_rep	CDS	9402434	9402567	.	+	2	Parent=Os07t0264900-01
Chr07	irgsp1_rep	CDS	9403150	9403248	.	+	0	Parent=Os07t0264900-01
Chr07	irgsp1_rep	CDS	9403318	9403446	.	+	0	Parent=Os07t0264900-01
Chr07	irgsp1_rep	three_prime_UTR	9403447	9403697	.	+	.	Parent=Os07t0264900-01
Chr07	irgsp1_rep	mRNA	9405839	9407139	.	+	.	ID=Os07t0265100-01;Name=Os07t0265100-01;Locus_id=Os07g0265100;Oryzabase Gene Symbol Synonym(s)=UTR319;Oryzabase Gene Name Synonym(s)=UV Tolerant Rice 319;Note=Conserved hypothetical protein.;Transcript_evidence=AK111251 (DDBJ%2C Best hit);ORF_evidence=B8B4Z2 (UniProt);NIAS_FLcDNA=002-180-E01;Oryzabase=12277;Expression=AK111251;TENOR=Os07t0265100-01;KEGG=Os07t0265100-01
Chr07	irgsp1_rep	CDS	9405839	9405936	.	+	0	Parent=Os07t0265100-01
Chr07	irgsp1_rep	CDS	9406038	9406091	.	+	1	Parent=Os07t0265100-01
Chr07	irgsp1_rep	CDS	9406211	9406262	.	+	1	Parent=Os07t0265100-01
Chr07	irgsp1_rep	CDS	9406774	9406980	.	+	0	Parent=Os07t0265100-01
Chr07	irgsp1_rep	three_prime_UTR	9406981	9407139	.	+	.	Parent=Os07t0265100-01
Chr07	irgsp1_rep	mRNA	9460566	9467850	.	-	.	ID=Os07t0265600-01;Name=Os07t0265600-01;Locus_id=Os07g0265600;CGSNL Gene Symbol=AGO16;CGSNL Gene Name=ARGONAUTE 16;Oryzabase Gene Symbol Synonym(s)=OsAGO16%2C OsAGO6%2C ZP1;Oryzabase Gene Name Synonym(s)=Protein argonaute 16%2C Protein ZWILLE/PINHEAD-like 1;Note=Similar to Protein argonaute 16.;Transcript_evidence=AK101842 (DDBJ%2C Best hit);ORF_evidence=Q6YSJ5 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515);InterPro=Stem cell self-renewal protein Piwi (IPR003165),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J033069G22;Oryzabase=8265;Expression=AK101842;TENOR=Os07t0265600-01;KEGG=Os07t0265600-01
Chr07	irgsp1_rep	five_prime_UTR	9467849	9467850	.	-	.	Parent=Os07t0265600-01
Chr07	irgsp1_rep	CDS	9467807	9467848	.	-	0	Parent=Os07t0265600-01
Chr07	irgsp1_rep	CDS	9467565	9467702	.	-	0	Parent=Os07t0265600-01
Chr07	irgsp1_rep	CDS	9466126	9466256	.	-	0	Parent=Os07t0265600-01
Chr07	irgsp1_rep	CDS	9465891	9465956	.	-	1	Parent=Os07t0265600-01
Chr07	irgsp1_rep	CDS	9461819	9461882	.	-	1	Parent=Os07t0265600-01
Chr07	irgsp1_rep	CDS	9461630	9461741	.	-	0	Parent=Os07t0265600-01
Chr07	irgsp1_rep	CDS	9461466	9461539	.	-	2	Parent=Os07t0265600-01
Chr07	irgsp1_rep	CDS	9461248	9461342	.	-	0	Parent=Os07t0265600-01
Chr07	irgsp1_rep	CDS	9461112	9461143	.	-	1	Parent=Os07t0265600-01
Chr07	irgsp1_rep	CDS	9460844	9461019	.	-	2	Parent=Os07t0265600-01
Chr07	irgsp1_rep	three_prime_UTR	9460566	9460843	.	-	.	Parent=Os07t0265600-01
Chr07	irgsp1_rep	mRNA	9538087	9541917	.	-	.	ID=Os07t0267200-01;Name=Os07t0267200-01;Locus_id=Os07g0267200;Note=Conserved hypothetical protein.;Transcript_evidence=AK242258 (DDBJ%2C Best hit);ORF_evidence=NP_001173077.1 (RefSeq);NIAS_FLcDNA=J075183F14;TENOR=Os07t0267200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	9541901	9541917	.	-	.	Parent=Os07t0267200-01
Chr07	irgsp1_rep	CDS	9541478	9541900	.	-	0	Parent=Os07t0267200-01
Chr07	irgsp1_rep	three_prime_UTR	9541475	9541477	.	-	.	Parent=Os07t0267200-01
Chr07	irgsp1_rep	three_prime_UTR	9540210	9540300	.	-	.	Parent=Os07t0267200-01
Chr07	irgsp1_rep	three_prime_UTR	9538087	9539265	.	-	.	Parent=Os07t0267200-01
Chr07	irgsp1_rep	mRNA	9564958	9565455	.	+	.	ID=Os07t0267300-01;Name=Os07t0267300-01;Locus_id=Os07g0267300;Note=Hypothetical gene.;Transcript_evidence=AK120463 (DDBJ%2C Best hit),AK071612 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013107O16,J023104L09;Expression=AK120463;TENOR=Os07t0267300-01;KEGG=Os07t0267300-01
Chr07	irgsp1_rep	five_prime_UTR	9564958	9565212	.	+	.	Parent=Os07t0267300-01
Chr07	irgsp1_rep	CDS	9565213	9565455	.	+	0	Parent=Os07t0267300-01
Chr07	irgsp1_rep	mRNA	9568413	9573289	.	-	.	ID=Os07t0267400-01;Name=Os07t0267400-01;Locus_id=Os07g0267400;Note=Peptidase C48%2C SUMO/Sentrin/Ubl1 domain containing protein.;Transcript_evidence=AK102801 (DDBJ%2C Best hit);ORF_evidence=Q2QNV8 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase C48%2C SUMO/Sentrin/Ubl1 (IPR003653),Transposase%2C Ptta/En/Spm%2C plant (IPR004252);NIAS_FLcDNA=J033108F01;TENOR=Os07t0267400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	9573288	9573289	.	-	.	Parent=Os07t0267400-01
Chr07	irgsp1_rep	CDS	9572917	9573287	.	-	0	Parent=Os07t0267400-01
Chr07	irgsp1_rep	CDS	9571765	9571861	.	-	1	Parent=Os07t0267400-01
Chr07	irgsp1_rep	CDS	9569508	9571678	.	-	0	Parent=Os07t0267400-01
Chr07	irgsp1_rep	CDS	9569309	9569431	.	-	1	Parent=Os07t0267400-01
Chr07	irgsp1_rep	CDS	9568917	9569208	.	-	1	Parent=Os07t0267400-01
Chr07	irgsp1_rep	CDS	9568636	9568839	.	-	0	Parent=Os07t0267400-01
Chr07	irgsp1_rep	three_prime_UTR	9568413	9568635	.	-	.	Parent=Os07t0267400-01
Chr07	irgsp1_rep	mRNA	9570008	9571282	.	-	.	ID=Os07t0267400-02;Name=Os07t0267400-02;Locus_id=Os07g0267400;Note=Hypothetical conserved gene.;Transcript_evidence=AK058863 (DDBJ%2C Best hit);ORF_evidence=Q2R0G7 (UniProt);InterPro=Transposase%2C Ptta/En/Spm%2C plant (IPR004252);NIAS_FLcDNA=001-005-G11;Expression=AK058863;TENOR=Os07t0267400-02;KEGG=Os07t0267400-02
Chr07	irgsp1_rep	CDS	9570008	9571282	.	-	0	Parent=Os07t0267400-02
Chr07	irgsp1_rep	mRNA	9738258	9740472	.	-	.	ID=Os07t0268400-00;Name=Os07t0268400-00;Locus_id=Os07g0268400;Note=Non-protein coding transcript.;Transcript_evidence=tplb0052d04 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os07t0268400-00
Chr07	irgsp1_rep	exon	9739455	9740472	.	-	.	Parent=Os07t0268400-00
Chr07	irgsp1_rep	exon	9738258	9739368	.	-	.	Parent=Os07t0268400-00
Chr07	irgsp1_rep	mRNA	9738390	9740798	.	+	.	ID=Os07t0268800-01;Name=Os07t0268800-01;Locus_id=Os07g0268800;Note=Protein of unknown function DUF594 family protein.;Transcript_evidence=AK065175 (DDBJ%2C Best hit);ORF_evidence=B8BH30 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);NIAS_FLcDNA=J013002D03;Expression=AK065175;TENOR=Os07t0268800-01;KEGG=Os07t0268800-01
Chr07	irgsp1_rep	five_prime_UTR	9738390	9738403	.	+	.	Parent=Os07t0268800-01
Chr07	irgsp1_rep	CDS	9738404	9740599	.	+	0	Parent=Os07t0268800-01
Chr07	irgsp1_rep	three_prime_UTR	9740600	9740798	.	+	.	Parent=Os07t0268800-01
Chr07	irgsp1_rep	mRNA	9820628	9821346	.	+	.	ID=Os07t0269400-00;Name=Os07t0269400-00;Locus_id=Os07g0269400;Note=Protein of unknown function DUF594 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6Z5R9 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);TENOR=Os07t0269400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	9820628	9820714	.	+	0	Parent=Os07t0269400-00
Chr07	irgsp1_rep	CDS	9820834	9821346	.	+	0	Parent=Os07t0269400-00
Chr07	irgsp1_rep	mRNA	9824468	9831477	.	+	.	ID=Os07t0269450-00;Name=Os07t0269450-00;Locus_id=Os07g0269450;Note=Hypothetical protein.;Transcript_evidence=tplb0052d04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0269450-00
Chr07	irgsp1_rep	five_prime_UTR	9824468	9824511	.	+	.	Parent=Os07t0269450-00
Chr07	irgsp1_rep	CDS	9824512	9824726	.	+	0	Parent=Os07t0269450-00
Chr07	irgsp1_rep	CDS	9824989	9824998	.	+	1	Parent=Os07t0269450-00
Chr07	irgsp1_rep	three_prime_UTR	9824999	9825416	.	+	.	Parent=Os07t0269450-00
Chr07	irgsp1_rep	three_prime_UTR	9830053	9831477	.	+	.	Parent=Os07t0269450-00
Chr07	irgsp1_rep	mRNA	9858212	9860005	.	+	.	ID=Os07t0269800-00;Name=Os07t0269800-00;Locus_id=Os07g0269800;Oryzabase Gene Symbol Synonym(s)=OsFbox361%2C Os_F0171;Oryzabase Gene Name Synonym(s)=F-box protein 361;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001059342.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated domain%2C type 3 (IPR013187),F-box associated interaction domain (IPR017451),Fumarate lyase%2C conserved site (IPR020557),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17137;TENOR=Os07t0269800-00
Chr07	irgsp1_rep	CDS	9858212	9860005	.	+	0	Parent=Os07t0269800-00
Chr07	irgsp1_rep	mRNA	9963261	9965398	.	-	.	ID=Os07t0270301-00;Name=Os07t0270301-00;Locus_id=Os07g0270301;Note=Hypothetical protein.;Transcript_evidence=tplb0052d04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0270301-00
Chr07	irgsp1_rep	five_prime_UTR	9963912	9965398	.	-	.	Parent=Os07t0270301-00
Chr07	irgsp1_rep	CDS	9963684	9963911	.	-	0	Parent=Os07t0270301-00
Chr07	irgsp1_rep	three_prime_UTR	9963261	9963683	.	-	.	Parent=Os07t0270301-00
Chr07	irgsp1_rep	mRNA	9963285	9965579	.	+	.	ID=Os07t0270800-00;Name=Os07t0270800-00;Locus_id=Os07g0270800;Note=Protein of unknown function DUF594 domain containing protein.;Transcript_evidence=EU954024 (DDBJ);ORF_evidence=Q8LIL8 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);TENOR=Os07t0270800-00
Chr07	irgsp1_rep	CDS	9963285	9965579	.	+	0	Parent=Os07t0270800-00
Chr07	irgsp1_rep	mRNA	9972367	9976187	.	+	.	ID=Os07t0270900-01;Name=Os07t0270900-01;Locus_id=Os07g0270900;Note=Mak16 protein family protein.;Transcript_evidence=AK058966 (DDBJ%2C Best hit);ORF_evidence=B8B501 (UniProt);InterPro=Mak16 protein (IPR006958);NIAS_FLcDNA=001-020-C08;Expression=AK058966;TENOR=Os07t0270900-01;KEGG=Os07t0270900-01
Chr07	irgsp1_rep	five_prime_UTR	9972367	9972467	.	+	.	Parent=Os07t0270900-01
Chr07	irgsp1_rep	five_prime_UTR	9972569	9972615	.	+	.	Parent=Os07t0270900-01
Chr07	irgsp1_rep	CDS	9972616	9972674	.	+	0	Parent=Os07t0270900-01
Chr07	irgsp1_rep	CDS	9972767	9972876	.	+	1	Parent=Os07t0270900-01
Chr07	irgsp1_rep	CDS	9973474	9973592	.	+	2	Parent=Os07t0270900-01
Chr07	irgsp1_rep	CDS	9973676	9973773	.	+	0	Parent=Os07t0270900-01
Chr07	irgsp1_rep	CDS	9974677	9974764	.	+	1	Parent=Os07t0270900-01
Chr07	irgsp1_rep	CDS	9974836	9974970	.	+	0	Parent=Os07t0270900-01
Chr07	irgsp1_rep	CDS	9975054	9975156	.	+	0	Parent=Os07t0270900-01
Chr07	irgsp1_rep	CDS	9975349	9975461	.	+	2	Parent=Os07t0270900-01
Chr07	irgsp1_rep	CDS	9975664	9975711	.	+	0	Parent=Os07t0270900-01
Chr07	irgsp1_rep	three_prime_UTR	9975712	9976187	.	+	.	Parent=Os07t0270900-01
Chr07	irgsp1_rep	mRNA	9972367	9975929	.	+	.	ID=Os07t0270900-02;Name=Os07t0270900-02;Locus_id=Os07g0270900;Note=Mak16 protein family protein.;Transcript_evidence=AK068904 (DDBJ%2C Best hit);ORF_evidence=B8B501 (UniProt);InterPro=Mak16 protein (IPR006958);NIAS_FLcDNA=J013169N21;Expression=AK068904;TENOR=Os07t0270900-02;KEGG=Os07t0270900-02
Chr07	irgsp1_rep	five_prime_UTR	9972367	9972467	.	+	.	Parent=Os07t0270900-02
Chr07	irgsp1_rep	five_prime_UTR	9972572	9972615	.	+	.	Parent=Os07t0270900-02
Chr07	irgsp1_rep	CDS	9972616	9972674	.	+	0	Parent=Os07t0270900-02
Chr07	irgsp1_rep	CDS	9972767	9972876	.	+	1	Parent=Os07t0270900-02
Chr07	irgsp1_rep	CDS	9973474	9973592	.	+	2	Parent=Os07t0270900-02
Chr07	irgsp1_rep	CDS	9973676	9973773	.	+	0	Parent=Os07t0270900-02
Chr07	irgsp1_rep	CDS	9974677	9974764	.	+	1	Parent=Os07t0270900-02
Chr07	irgsp1_rep	CDS	9974836	9974970	.	+	0	Parent=Os07t0270900-02
Chr07	irgsp1_rep	CDS	9975054	9975156	.	+	0	Parent=Os07t0270900-02
Chr07	irgsp1_rep	CDS	9975349	9975461	.	+	2	Parent=Os07t0270900-02
Chr07	irgsp1_rep	CDS	9975664	9975711	.	+	0	Parent=Os07t0270900-02
Chr07	irgsp1_rep	three_prime_UTR	9975712	9975929	.	+	.	Parent=Os07t0270900-02
Chr07	irgsp1_rep	mRNA	9976525	9980344	.	-	.	ID=Os07t0270950-01;Name=Os07t0270950-01;Locus_id=Os07g0270950;Note=Similar to SETH2%3B transferase%2C transferring glycosyl groups.;Transcript_evidence=AK242219 (DDBJ%2C Best hit);ORF_evidence=NP_850658.1 (RefSeq);GO=Biological Process: GPI anchor biosynthetic process (GO:0006506),Biological Process: biosynthetic process (GO:0009058);InterPro=Glycosyl transferase%2C family 1 (IPR001296),PIGA%2C GPI anchor biosynthesis (IPR013234);NIAS_FLcDNA=J075173E02;TENOR=Os07t0270950-01;KEGG=Os07t0270950-01 (EC:2.4.1.198)
Chr07	irgsp1_rep	five_prime_UTR	9979967	9980344	.	-	.	Parent=Os07t0270950-01
Chr07	irgsp1_rep	CDS	9979923	9979966	.	-	0	Parent=Os07t0270950-01
Chr07	irgsp1_rep	CDS	9979694	9979835	.	-	1	Parent=Os07t0270950-01
Chr07	irgsp1_rep	CDS	9978813	9979385	.	-	0	Parent=Os07t0270950-01
Chr07	irgsp1_rep	CDS	9978424	9978578	.	-	0	Parent=Os07t0270950-01
Chr07	irgsp1_rep	CDS	9977669	9977759	.	-	1	Parent=Os07t0270950-01
Chr07	irgsp1_rep	CDS	9977451	9977567	.	-	0	Parent=Os07t0270950-01
Chr07	irgsp1_rep	CDS	9977179	9977282	.	-	0	Parent=Os07t0270950-01
Chr07	irgsp1_rep	CDS	9976978	9977068	.	-	1	Parent=Os07t0270950-01
Chr07	irgsp1_rep	CDS	9976807	9976905	.	-	0	Parent=Os07t0270950-01
Chr07	irgsp1_rep	three_prime_UTR	9976525	9976806	.	-	.	Parent=Os07t0270950-01
Chr07	irgsp1_rep	mRNA	9982698	9988539	.	-	.	ID=Os07t0271000-01;Name=Os07t0271000-01;Locus_id=Os07g0271000;Oryzabase Gene Name Synonym(s)=Rab GDP dissociation inhibitor alpha;Note=Similar to GDP dissociation inhibitor protein OsGDI1.;Transcript_evidence=AK069636 (DDBJ%2C Best hit);ORF_evidence=Q69EY5 (UniProt);GO=Biological Process: protein transport (GO:0015031),Molecular Function: Rab GDP-dissociation inhibitor activity (GO:0005093);InterPro=Rab GDI protein (IPR000806),GDP dissociation inhibitor (IPR018203);NIAS_FLcDNA=J023025M21;Oryzabase=16795;Expression=AK069636;TENOR=Os07t0271000-01;KEGG=Os07t0271000-01
Chr07	irgsp1_rep	five_prime_UTR	9988413	9988539	.	-	.	Parent=Os07t0271000-01
Chr07	irgsp1_rep	CDS	9988326	9988412	.	-	0	Parent=Os07t0271000-01
Chr07	irgsp1_rep	CDS	9987828	9987890	.	-	0	Parent=Os07t0271000-01
Chr07	irgsp1_rep	CDS	9987549	9987632	.	-	0	Parent=Os07t0271000-01
Chr07	irgsp1_rep	CDS	9987170	9987277	.	-	0	Parent=Os07t0271000-01
Chr07	irgsp1_rep	CDS	9986907	9987079	.	-	0	Parent=Os07t0271000-01
Chr07	irgsp1_rep	CDS	9986046	9986157	.	-	1	Parent=Os07t0271000-01
Chr07	irgsp1_rep	CDS	9985619	9985699	.	-	0	Parent=Os07t0271000-01
Chr07	irgsp1_rep	CDS	9985469	9985531	.	-	0	Parent=Os07t0271000-01
Chr07	irgsp1_rep	CDS	9984913	9985014	.	-	0	Parent=Os07t0271000-01
Chr07	irgsp1_rep	CDS	9984050	9984175	.	-	0	Parent=Os07t0271000-01
Chr07	irgsp1_rep	CDS	9983717	9983926	.	-	0	Parent=Os07t0271000-01
Chr07	irgsp1_rep	CDS	9983548	9983622	.	-	0	Parent=Os07t0271000-01
Chr07	irgsp1_rep	CDS	9983023	9983079	.	-	0	Parent=Os07t0271000-01
Chr07	irgsp1_rep	three_prime_UTR	9982698	9983022	.	-	.	Parent=Os07t0271000-01
Chr07	irgsp1_rep	mRNA	10018726	10020733	.	+	.	ID=Os07t0271500-01;Name=Os07t0271500-01;Locus_id=Os07g0271500;CGSNL Gene Symbol=PKS9;CGSNL Gene Name=POLYKETIDE SYNTHASE 9;Oryzabase Gene Symbol Synonym(s)=OsPKS09%2C PKS09%2C OsPKS9%2C OsCHS9%2C CHS9;Oryzabase Gene Name Synonym(s)=polyketide synthase 9%2C Chalcone synthase 9;Note=Similar to Chalcone synthase.;Transcript_evidence=AK109558 (DDBJ%2C Best hit);ORF_evidence=Q9SEM9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Chalcone/stilbene synthase%2C N-terminal (IPR001099),Polyketide synthase%2C type III (IPR011141),Chalcone/stilbene synthase%2C C-terminal (IPR012328),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);NIAS_FLcDNA=002-125-E09;Oryzabase=21558;Expression=AK109558;TENOR=Os07t0271500-01;KEGG=Os07t0271500-01
Chr07	irgsp1_rep	five_prime_UTR	10018726	10018812	.	+	.	Parent=Os07t0271500-01
Chr07	irgsp1_rep	CDS	10018813	10019020	.	+	0	Parent=Os07t0271500-01
Chr07	irgsp1_rep	CDS	10019434	10020434	.	+	2	Parent=Os07t0271500-01
Chr07	irgsp1_rep	three_prime_UTR	10020435	10020733	.	+	.	Parent=Os07t0271500-01
Chr07	irgsp1_rep	mRNA	10019431	10020346	.	-	.	ID=Os07t0271550-00;Name=Os07t0271550-00;Locus_id=Os07g0271550;Note=Hypothetical gene.;Transcript_evidence=EU966441 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0271550-00
Chr07	irgsp1_rep	five_prime_UTR	10020345	10020346	.	-	.	Parent=Os07t0271550-00
Chr07	irgsp1_rep	CDS	10019431	10020344	.	-	0	Parent=Os07t0271550-00
Chr07	irgsp1_rep	mRNA	10031346	10034702	.	-	.	ID=Os07t0271600-00;Name=Os07t0271600-00;Locus_id=Os07g0271600;Note=Similar to MAK16 protein-related.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_173742.1 (RefSeq);TENOR=Os07t0271600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	10034644	10034702	.	-	0	Parent=Os07t0271600-00
Chr07	irgsp1_rep	CDS	10034436	10034545	.	-	1	Parent=Os07t0271600-00
Chr07	irgsp1_rep	CDS	10032386	10032528	.	-	2	Parent=Os07t0271600-00
Chr07	irgsp1_rep	CDS	10032210	10032297	.	-	0	Parent=Os07t0271600-00
Chr07	irgsp1_rep	CDS	10031767	10031876	.	-	2	Parent=Os07t0271600-00
Chr07	irgsp1_rep	CDS	10031346	10031423	.	-	0	Parent=Os07t0271600-00
Chr07	irgsp1_rep	mRNA	10031950	10032019	.	-	.	ID=Os07t0271650-00;Name=Os07t0271650-00;Locus_id=Os07g0271650;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0271650-00
Chr07	irgsp1_rep	exon	10031950	10032019	.	-	.	Parent=Os07t0271650-00
Chr07	irgsp1_rep	mRNA	10036277	10041430	.	-	.	ID=Os07t0271700-00;Name=Os07t0271700-00;Locus_id=Os07g0271700;Note=Hypothetical conserved gene.;Transcript_evidence=tplb0001g08 (Wheat FLcDNA);ORF_evidence=Q6Z4K3 (UniProt);TENOR=Os07t0271700-00;KEGG=Os07t0271700-00
Chr07	irgsp1_rep	five_prime_UTR	10041343	10041430	.	-	.	Parent=Os07t0271700-00
Chr07	irgsp1_rep	CDS	10041271	10041342	.	-	0	Parent=Os07t0271700-00
Chr07	irgsp1_rep	CDS	10037354	10038175	.	-	0	Parent=Os07t0271700-00
Chr07	irgsp1_rep	three_prime_UTR	10037179	10037353	.	-	.	Parent=Os07t0271700-00
Chr07	irgsp1_rep	three_prime_UTR	10036277	10037096	.	-	.	Parent=Os07t0271700-00
Chr07	irgsp1_rep	mRNA	10057776	10059071	.	-	.	ID=Os07t0272300-01;Name=Os07t0272300-01;Locus_id=Os07g0272300;Note=Similar to Salt tolerance protein.;Transcript_evidence=AK120992 (DDBJ%2C Best hit);ORF_evidence=B6T887 (UniProt);GO=Biological Process: response to desiccation (GO:0009269);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864),Immunoglobulin-like fold (IPR013783),Water stress and hypersensitive response domain (IPR013990);NIAS_FLcDNA=J023043N15;Expression=AK120992;TENOR=Os07t0272300-01;KEGG=Os07t0272300-01
Chr07	irgsp1_rep	CDS	10058643	10059071	.	-	0	Parent=Os07t0272300-01
Chr07	irgsp1_rep	CDS	10058029	10058034	.	-	0	Parent=Os07t0272300-01
Chr07	irgsp1_rep	three_prime_UTR	10057776	10058028	.	-	.	Parent=Os07t0272300-01
Chr07	irgsp1_rep	mRNA	10064207	10068002	.	+	.	ID=Os07t0272400-01;Name=Os07t0272400-01;Locus_id=Os07g0272400;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK102876 (DDBJ%2C Best hit);ORF_evidence=NP_001150992.1 (RefSeq);GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C FYVE-type (IPR000306),Ysc84 actin-binding domain (IPR007461),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C FYVE-related (IPR017455);NIAS_FLcDNA=J033112D24;Expression=AK102876;TENOR=Os07t0272400-01;KEGG=Os07t0272400-01
Chr07	irgsp1_rep	five_prime_UTR	10064207	10064532	.	+	.	Parent=Os07t0272400-01
Chr07	irgsp1_rep	five_prime_UTR	10064858	10064880	.	+	.	Parent=Os07t0272400-01
Chr07	irgsp1_rep	CDS	10064881	10065792	.	+	0	Parent=Os07t0272400-01
Chr07	irgsp1_rep	CDS	10065917	10066117	.	+	0	Parent=Os07t0272400-01
Chr07	irgsp1_rep	CDS	10066639	10066834	.	+	0	Parent=Os07t0272400-01
Chr07	irgsp1_rep	CDS	10067540	10067724	.	+	2	Parent=Os07t0272400-01
Chr07	irgsp1_rep	three_prime_UTR	10067725	10068002	.	+	.	Parent=Os07t0272400-01
Chr07	irgsp1_rep	mRNA	10109609	10111426	.	+	.	ID=Os07t0272700-00;Name=Os07t0272700-00;Locus_id=Os07g0272700;CGSNL Gene Symbol=NAC101;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 101;Oryzabase Gene Symbol Synonym(s)=ONAC101;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 101;Note=No apical meristem (NAM) protein domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001175131.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);Oryzabase=15864;TENOR=Os07t0272700-00;KEGG=Os07t0272700-00
Chr07	irgsp1_rep	CDS	10109609	10111426	.	+	0	Parent=Os07t0272700-00
Chr07	irgsp1_rep	mRNA	10112215	10114162	.	-	.	ID=Os07t0272800-01;Name=Os07t0272800-01;Locus_id=Os07g0272800;Note=Hypothetical protein.;Transcript_evidence=AK107279 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-126-A10;Expression=AK107279;TENOR=Os07t0272800-01;KEGG=Os07t0272800-01
Chr07	irgsp1_rep	five_prime_UTR	10113933	10114162	.	-	.	Parent=Os07t0272800-01
Chr07	irgsp1_rep	five_prime_UTR	10113474	10113527	.	-	.	Parent=Os07t0272800-01
Chr07	irgsp1_rep	CDS	10113228	10113473	.	-	0	Parent=Os07t0272800-01
Chr07	irgsp1_rep	three_prime_UTR	10112215	10113227	.	-	.	Parent=Os07t0272800-01
Chr07	irgsp1_rep	mRNA	10115287	10116209	.	-	.	ID=Os07t0272900-01;Name=Os07t0272900-01;Locus_id=Os07g0272900;Note=Conserved hypothetical protein.;Transcript_evidence=AK067826 (DDBJ%2C Best hit);ORF_evidence=B8B505 (UniProt);NIAS_FLcDNA=J013120F12;TENOR=Os07t0272900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	10116208	10116209	.	-	.	Parent=Os07t0272900-01
Chr07	irgsp1_rep	CDS	10116013	10116207	.	-	0	Parent=Os07t0272900-01
Chr07	irgsp1_rep	CDS	10115609	10115983	.	-	0	Parent=Os07t0272900-01
Chr07	irgsp1_rep	three_prime_UTR	10115287	10115608	.	-	.	Parent=Os07t0272900-01
Chr07	irgsp1_rep	mRNA	10115543	10116399	.	+	.	ID=Os07t0273000-01;Name=Os07t0273000-01;Locus_id=Os07g0273000;Note=Conserved hypothetical protein.;Transcript_evidence=AK064606 (DDBJ%2C Best hit);ORF_evidence=Q8GVI1 (UniProt);NIAS_FLcDNA=002-113-A05;TENOR=Os07t0273000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	10115543	10115928	.	+	.	Parent=Os07t0273000-01
Chr07	irgsp1_rep	CDS	10115929	10116258	.	+	0	Parent=Os07t0273000-01
Chr07	irgsp1_rep	three_prime_UTR	10116259	10116399	.	+	.	Parent=Os07t0273000-01
Chr07	irgsp1_rep	mRNA	10127444	10127740	.	+	.	ID=Os07t0273150-00;Name=Os07t0273150-00;Locus_id=Os07g0273150;Note=Similar to ribosomal protein L22.;Transcript_evidence=DQ245870 (DDBJ);ORF_evidence=YP_874692.1 (RefSeq);TENOR=Os07t0273150-00
Chr07	irgsp1_rep	CDS	10127444	10127740	.	+	0	Parent=Os07t0273150-00
Chr07	irgsp1_rep	mRNA	10128299	10137995	.	-	.	ID=Os07t0273301-00;Name=Os07t0273301-00;Locus_id=Os07g0273301;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FWL0 (UniProt);InterPro=Chromatin assembly factor 1 subunit A (IPR022043);TENOR=Os07t0273301-00;KEGG=Os07t0273301-00
Chr07	irgsp1_rep	CDS	10137950	10137995	.	-	0	Parent=Os07t0273301-00
Chr07	irgsp1_rep	CDS	10134234	10134345	.	-	2	Parent=Os07t0273301-00
Chr07	irgsp1_rep	CDS	10132563	10132626	.	-	1	Parent=Os07t0273301-00
Chr07	irgsp1_rep	CDS	10132137	10132498	.	-	0	Parent=Os07t0273301-00
Chr07	irgsp1_rep	CDS	10131439	10131786	.	-	1	Parent=Os07t0273301-00
Chr07	irgsp1_rep	CDS	10131244	10131325	.	-	1	Parent=Os07t0273301-00
Chr07	irgsp1_rep	CDS	10131036	10131203	.	-	0	Parent=Os07t0273301-00
Chr07	irgsp1_rep	CDS	10129118	10129522	.	-	0	Parent=Os07t0273301-00
Chr07	irgsp1_rep	CDS	10128896	10129033	.	-	0	Parent=Os07t0273301-00
Chr07	irgsp1_rep	CDS	10128299	10128442	.	-	0	Parent=Os07t0273301-00
Chr07	irgsp1_rep	mRNA	10141443	10142241	.	-	.	ID=Os07t0273500-01;Name=Os07t0273500-01;Locus_id=Os07g0273500;Note=Non-protein coding transcript.;Transcript_evidence=AK063067 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-110-G08;TENOR=Os07t0273500-01
Chr07	irgsp1_rep	exon	10141443	10142241	.	-	.	Parent=Os07t0273500-01
Chr07	irgsp1_rep	mRNA	10142289	10145897	.	-	.	ID=Os07t0273600-01;Name=Os07t0273600-01;Locus_id=Os07g0273600;Note=Disease resistance protein domain containing protein.;Transcript_evidence=AK101463 (DDBJ%2C Best hit);ORF_evidence=B9FWL1 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J033040H02;TENOR=Os07t0273600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	10145897	10145897	.	-	.	Parent=Os07t0273600-01
Chr07	irgsp1_rep	CDS	10144586	10145896	.	-	0	Parent=Os07t0273600-01
Chr07	irgsp1_rep	three_prime_UTR	10142289	10144585	.	-	.	Parent=Os07t0273600-01
Chr07	irgsp1_rep	mRNA	10155459	10159775	.	-	.	ID=Os07t0273700-00;Name=Os07t0273700-00;Locus_id=Os07g0273700;CGSNL Gene Symbol=WRKY123;CGSNL Gene Name=WRKY GENE 123;Oryzabase Gene Symbol Synonym(s)=OsWRKY123%2C DLN183%2C OsDLN183;Oryzabase Gene Name Synonym(s)=DLN repressor 183%2C DLN motif protein 183;Note=Disease resistance protein domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001059355.2 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: defense response (GO:0006952),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),Leucine-rich repeat (IPR001611),NB-ARC (IPR002182),Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=9219;TENOR=Os07t0273700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	10158135	10159775	.	-	0	Parent=Os07t0273700-00
Chr07	irgsp1_rep	CDS	10155576	10157884	.	-	0	Parent=Os07t0273700-00
Chr07	irgsp1_rep	CDS	10155459	10155528	.	-	1	Parent=Os07t0273700-00
Chr07	irgsp1_rep	mRNA	10173157	10176751	.	+	.	ID=Os07t0273900-01;Name=Os07t0273900-01;Locus_id=Os07g0273900;Note=Disease resistance protein domain containing protein.;Transcript_evidence=AK065799 (DDBJ%2C Best hit);ORF_evidence=A3BIJ9 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013037E18;TENOR=Os07t0273900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	10173157	10173193	.	+	.	Parent=Os07t0273900-01
Chr07	irgsp1_rep	CDS	10173194	10175362	.	+	0	Parent=Os07t0273900-01
Chr07	irgsp1_rep	three_prime_UTR	10175363	10176751	.	+	.	Parent=Os07t0273900-01
Chr07	irgsp1_rep	mRNA	10205020	10208883	.	-	.	ID=Os07t0274100-01;Name=Os07t0274100-01;Locus_id=Os07g0274100;Note=Metallophosphoesterase domain containing protein.;Transcript_evidence=AK106993 (DDBJ%2C Best hit);ORF_evidence=XP_002461831.1 (RefSeq);NIAS_FLcDNA=002-120-B06;Expression=AK106993;TENOR=Os07t0274100-01;KEGG=Os07t0274100-01
Chr07	irgsp1_rep	five_prime_UTR	10208754	10208883	.	-	.	Parent=Os07t0274100-01
Chr07	irgsp1_rep	CDS	10208468	10208753	.	-	0	Parent=Os07t0274100-01
Chr07	irgsp1_rep	CDS	10207330	10207571	.	-	2	Parent=Os07t0274100-01
Chr07	irgsp1_rep	CDS	10205609	10207177	.	-	0	Parent=Os07t0274100-01
Chr07	irgsp1_rep	CDS	10205194	10205310	.	-	0	Parent=Os07t0274100-01
Chr07	irgsp1_rep	three_prime_UTR	10205020	10205193	.	-	.	Parent=Os07t0274100-01
Chr07	irgsp1_rep	mRNA	10180484	10208816	.	-	.	ID=Os07t0274100-02;Name=Os07t0274100-02;Locus_id=Os07g0274100;Note=Metallophosphoesterase domain containing protein.;Transcript_evidence=AK068832 (DDBJ%2C Best hit);ORF_evidence=XP_002461831.1 (RefSeq);NIAS_FLcDNA=J013161E16;Expression=AK068832;TENOR=Os07t0274100-02;KEGG=Os07t0274100-02
Chr07	irgsp1_rep	five_prime_UTR	10208754	10208816	.	-	.	Parent=Os07t0274100-02
Chr07	irgsp1_rep	CDS	10208468	10208753	.	-	0	Parent=Os07t0274100-02
Chr07	irgsp1_rep	CDS	10207330	10207571	.	-	2	Parent=Os07t0274100-02
Chr07	irgsp1_rep	CDS	10205609	10207177	.	-	0	Parent=Os07t0274100-02
Chr07	irgsp1_rep	CDS	10196573	10196689	.	-	0	Parent=Os07t0274100-02
Chr07	irgsp1_rep	three_prime_UTR	10196561	10196572	.	-	.	Parent=Os07t0274100-02
Chr07	irgsp1_rep	three_prime_UTR	10195816	10195965	.	-	.	Parent=Os07t0274100-02
Chr07	irgsp1_rep	three_prime_UTR	10181815	10182053	.	-	.	Parent=Os07t0274100-02
Chr07	irgsp1_rep	three_prime_UTR	10181614	10181742	.	-	.	Parent=Os07t0274100-02
Chr07	irgsp1_rep	three_prime_UTR	10181260	10181530	.	-	.	Parent=Os07t0274100-02
Chr07	irgsp1_rep	three_prime_UTR	10180484	10180727	.	-	.	Parent=Os07t0274100-02
Chr07	irgsp1_rep	mRNA	10218278	10220733	.	-	.	ID=Os07t0274300-00;Name=Os07t0274300-00;Locus_id=Os07g0274300;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FWL6 (UniProt);TENOR=Os07t0274300-00;KEGG=Os07t0274300-00
Chr07	irgsp1_rep	CDS	10220323	10220733	.	-	0	Parent=Os07t0274300-00
Chr07	irgsp1_rep	CDS	10220047	10220247	.	-	0	Parent=Os07t0274300-00
Chr07	irgsp1_rep	CDS	10219791	10219897	.	-	0	Parent=Os07t0274300-00
Chr07	irgsp1_rep	CDS	10218278	10218497	.	-	1	Parent=Os07t0274300-00
Chr07	irgsp1_rep	mRNA	10223522	10226142	.	+	.	ID=Os07t0274400-01;Name=Os07t0274400-01;Locus_id=Os07g0274400;Oryzabase Gene Name Synonym(s)=B12D-like protein;Note=B12D family protein.;Transcript_evidence=AK100692 (DDBJ%2C Best hit);ORF_evidence=Q9XHD5 (UniProt);InterPro=NADH-ubiquinone reductase complex 1 MLRQ subunit (IPR010530);NIAS_FLcDNA=J023114G05;Oryzabase=18121;Expression=AK100692;TENOR=Os07t0274400-01;KEGG=Os07t0274400-01
Chr07	irgsp1_rep	five_prime_UTR	10223522	10223565	.	+	.	Parent=Os07t0274400-01
Chr07	irgsp1_rep	CDS	10223566	10223592	.	+	0	Parent=Os07t0274400-01
Chr07	irgsp1_rep	CDS	10223976	10224064	.	+	0	Parent=Os07t0274400-01
Chr07	irgsp1_rep	CDS	10225718	10225871	.	+	1	Parent=Os07t0274400-01
Chr07	irgsp1_rep	three_prime_UTR	10225872	10226142	.	+	.	Parent=Os07t0274400-01
Chr07	irgsp1_rep	mRNA	10231836	10232644	.	+	.	ID=Os07t0274700-01;Name=Os07t0274700-01;Locus_id=Os07g0274700;Oryzabase Gene Name Synonym(s)=B12D-like protein;Note=HvB12D protein (B12Dg1 protein).;Transcript_evidence=AK243430 (DDBJ%2C Best hit);ORF_evidence=B6T2Z0 (UniProt);InterPro=NADH-ubiquinone reductase complex 1 MLRQ subunit (IPR010530);NIAS_FLcDNA=J100067M12;Oryzabase=18122;TENOR=Os07t0274700-01;KEGG=Os07t0274700-01
Chr07	irgsp1_rep	five_prime_UTR	10231836	10231926	.	+	.	Parent=Os07t0274700-01
Chr07	irgsp1_rep	CDS	10231927	10231980	.	+	0	Parent=Os07t0274700-01
Chr07	irgsp1_rep	CDS	10232134	10232222	.	+	0	Parent=Os07t0274700-01
Chr07	irgsp1_rep	CDS	10232349	10232502	.	+	1	Parent=Os07t0274700-01
Chr07	irgsp1_rep	three_prime_UTR	10232503	10232644	.	+	.	Parent=Os07t0274700-01
Chr07	irgsp1_rep	mRNA	10247753	10252401	.	+	.	ID=Os07t0274800-01;Name=Os07t0274800-01;Locus_id=Os07g0274800;CGSNL Gene Symbol=PP2A-B'GAMMA;CGSNL Gene Name=PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' GAMMA;Oryzabase Gene Symbol Synonym(s)=OsPP2A-B'gamma%2C OsB'gamma;Oryzabase Gene Name Synonym(s)=protein phosphatase 2A B'gamma subunit;Note=Similar to Protein phosphatase 2A B' regulatory subunit.;Transcript_evidence=AK068665 (DDBJ%2C Best hit);ORF_evidence=NP_001105904.1 (RefSeq);GO=Biological Process: signal transduction (GO:0007165),Cellular Component: protein phosphatase type 2A complex (GO:0000159),Molecular Function: binding (GO:0005488),Molecular Function: protein phosphatase type 2A regulator activity (GO:0008601);InterPro=Protein phosphatase 2A%2C regulatory B subunit%2C B56 (IPR002554),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013159O18;Oryzabase=23330;Expression=AK068665;TENOR=Os07t0274800-01;KEGG=Os07t0274800-01
Chr07	irgsp1_rep	five_prime_UTR	10247753	10248008	.	+	.	Parent=Os07t0274800-01
Chr07	irgsp1_rep	five_prime_UTR	10248373	10248593	.	+	.	Parent=Os07t0274800-01
Chr07	irgsp1_rep	CDS	10248594	10249787	.	+	0	Parent=Os07t0274800-01
Chr07	irgsp1_rep	CDS	10251622	10251981	.	+	0	Parent=Os07t0274800-01
Chr07	irgsp1_rep	three_prime_UTR	10251982	10251995	.	+	.	Parent=Os07t0274800-01
Chr07	irgsp1_rep	three_prime_UTR	10252101	10252401	.	+	.	Parent=Os07t0274800-01
Chr07	irgsp1_rep	mRNA	10247753	10252401	.	+	.	ID=Os07t0274800-02;Name=Os07t0274800-02;Locus_id=Os07g0274800;CGSNL Gene Symbol=PP2A-B'GAMMA;CGSNL Gene Name=PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' GAMMA;Oryzabase Gene Symbol Synonym(s)=OsPP2A-B'gamma%2C OsB'gamma;Oryzabase Gene Name Synonym(s)=protein phosphatase 2A B'gamma subunit;Note=Similar to Protein phosphatase 2A B' regulatory subunit.;Transcript_evidence=AK121258 (DDBJ%2C Best hit);ORF_evidence=NP_001105904.1 (RefSeq);GO=Biological Process: signal transduction (GO:0007165),Cellular Component: protein phosphatase type 2A complex (GO:0000159),Molecular Function: binding (GO:0005488),Molecular Function: protein phosphatase type 2A regulator activity (GO:0008601);InterPro=Protein phosphatase 2A%2C regulatory B subunit%2C B56 (IPR002554),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023103D01;Oryzabase=23330;Expression=AK121258;TENOR=Os07t0274800-02;KEGG=Os07t0274800-02
Chr07	irgsp1_rep	five_prime_UTR	10247753	10248044	.	+	.	Parent=Os07t0274800-02
Chr07	irgsp1_rep	five_prime_UTR	10248373	10248593	.	+	.	Parent=Os07t0274800-02
Chr07	irgsp1_rep	CDS	10248594	10249787	.	+	0	Parent=Os07t0274800-02
Chr07	irgsp1_rep	CDS	10251622	10251981	.	+	0	Parent=Os07t0274800-02
Chr07	irgsp1_rep	three_prime_UTR	10251982	10251995	.	+	.	Parent=Os07t0274800-02
Chr07	irgsp1_rep	three_prime_UTR	10252101	10252401	.	+	.	Parent=Os07t0274800-02
Chr07	irgsp1_rep	mRNA	10264253	10265311	.	+	.	ID=Os07t0275100-00;Name=Os07t0275100-00;Locus_id=Os07g0275100;Note=Similar to predicted protein.;Transcript_evidence=tplb0006b19 (Wheat FLcDNA);ORF_evidence=E5LBM4 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: oxygen evolving complex (GO:0009654),Cellular Component: extrinsic to membrane (GO:0019898),Molecular Function: calcium ion binding (GO:0005509);InterPro=Photosystem II PsbP%2C oxygen evolving complex (IPR002683),Mog1/PsbP%2C alpha/beta/alpha sandwich (IPR016123),Mog1/PsbP/DUF1795%2C alpha/beta/alpha sandwich (IPR016124);TENOR=Os07t0275100-00;KEGG=Os07t0275100-00
Chr07	irgsp1_rep	CDS	10264253	10264801	.	+	0	Parent=Os07t0275100-00
Chr07	irgsp1_rep	CDS	10264944	10265162	.	+	0	Parent=Os07t0275100-00
Chr07	irgsp1_rep	three_prime_UTR	10265163	10265311	.	+	.	Parent=Os07t0275100-00
Chr07	irgsp1_rep	mRNA	10265625	10265904	.	+	.	ID=Os07t0275201-00;Name=Os07t0275201-00;Locus_id=Os07g0275201;Note=Hypothetical conserved gene.;Transcript_evidence=BT017310 (DDBJ);ORF_evidence=A3BIK7 (UniProt);TENOR=Os07t0275201-00;KEGG=Os07t0275201-00
Chr07	irgsp1_rep	five_prime_UTR	10265625	10265749	.	+	.	Parent=Os07t0275201-00
Chr07	irgsp1_rep	CDS	10265750	10265878	.	+	0	Parent=Os07t0275201-00
Chr07	irgsp1_rep	three_prime_UTR	10265879	10265904	.	+	.	Parent=Os07t0275201-00
Chr07	irgsp1_rep	mRNA	10274229	10277895	.	+	.	ID=Os07t0275300-01;Name=Os07t0275300-01;Locus_id=Os07g0275300;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK067254 (DDBJ%2C Best hit);ORF_evidence=Q5K4G3 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J013099E09;Expression=AK067254;TENOR=Os07t0275300-01;KEGG=Os07t0275300-01
Chr07	irgsp1_rep	five_prime_UTR	10274229	10274388	.	+	.	Parent=Os07t0275300-01
Chr07	irgsp1_rep	CDS	10274389	10274477	.	+	0	Parent=Os07t0275300-01
Chr07	irgsp1_rep	CDS	10276418	10276580	.	+	1	Parent=Os07t0275300-01
Chr07	irgsp1_rep	CDS	10276839	10276905	.	+	0	Parent=Os07t0275300-01
Chr07	irgsp1_rep	CDS	10276987	10277218	.	+	2	Parent=Os07t0275300-01
Chr07	irgsp1_rep	CDS	10277501	10277711	.	+	1	Parent=Os07t0275300-01
Chr07	irgsp1_rep	three_prime_UTR	10277712	10277895	.	+	.	Parent=Os07t0275300-01
Chr07	irgsp1_rep	mRNA	10279543	10280143	.	-	.	ID=Os07t0275475-00;Name=Os07t0275475-00;Locus_id=Os07g0275475;Note=Hypothetical conserved gene.;Transcript_evidence=CU406208 (DDBJ%2C Best hit);ORF_evidence=GeneMark;TENOR=Os07t0275475-00;KEGG=Os07t0275475-00
Chr07	irgsp1_rep	five_prime_UTR	10279955	10280143	.	-	.	Parent=Os07t0275475-00
Chr07	irgsp1_rep	CDS	10279685	10279954	.	-	0	Parent=Os07t0275475-00
Chr07	irgsp1_rep	three_prime_UTR	10279543	10279684	.	-	.	Parent=Os07t0275475-00
Chr07	irgsp1_rep	mRNA	10288817	10292458	.	-	.	ID=Os07t0275801-00;Name=Os07t0275801-00;Locus_id=Os07g0275801;Note=Similar to Chloroplast photosystem II reaction center protein (Fragment).;Transcript_evidence=tplb0006b19 (Wheat FLcDNA);ORF_evidence=B3VV50 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: oxygen evolving complex (GO:0009654),Cellular Component: extrinsic to membrane (GO:0019898),Molecular Function: calcium ion binding (GO:0005509);InterPro=Photosystem II PsbP%2C oxygen evolving complex (IPR002683),Mog1/PsbP%2C alpha/beta/alpha sandwich (IPR016123),Mog1/PsbP/DUF1795%2C alpha/beta/alpha sandwich (IPR016124);TENOR=Os07t0275801-00;KEGG=Os07t0275801-00
Chr07	irgsp1_rep	five_prime_UTR	10292373	10292458	.	-	.	Parent=Os07t0275801-00
Chr07	irgsp1_rep	CDS	10292130	10292372	.	-	0	Parent=Os07t0275801-00
Chr07	irgsp1_rep	three_prime_UTR	10292117	10292129	.	-	.	Parent=Os07t0275801-00
Chr07	irgsp1_rep	three_prime_UTR	10288817	10288930	.	-	.	Parent=Os07t0275801-00
Chr07	irgsp1_rep	mRNA	10298541	10299495	.	-	.	ID=Os07t0275901-00;Name=Os07t0275901-00;Locus_id=Os07g0275901;Note=Similar to cDNA clone:J013056O11%2C full insert sequence.;Transcript_evidence=tplb0006b19 (Wheat FLcDNA);ORF_evidence=E5LBM4 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: oxygen evolving complex (GO:0009654),Cellular Component: extrinsic to membrane (GO:0019898),Molecular Function: calcium ion binding (GO:0005509);InterPro=Photosystem II PsbP%2C oxygen evolving complex (IPR002683);TENOR=Os07t0275901-00;KEGG=Os07t0275901-00
Chr07	irgsp1_rep	five_prime_UTR	10299333	10299495	.	-	.	Parent=Os07t0275901-00
Chr07	irgsp1_rep	CDS	10299102	10299332	.	-	0	Parent=Os07t0275901-00
Chr07	irgsp1_rep	three_prime_UTR	10298541	10298605	.	-	.	Parent=Os07t0275901-00
Chr07	irgsp1_rep	mRNA	10305762	10308372	.	-	.	ID=Os07t0276000-01;Name=Os07t0276000-01;Locus_id=Os07g0276000;Oryzabase Gene Symbol Synonym(s)=OsFbox362%2C Os_F0439;Oryzabase Gene Name Synonym(s)=F-box protein 362;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK069795 (DDBJ%2C Best hit);ORF_evidence=A2YK77 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023027F21;Oryzabase=17138;TENOR=Os07t0276000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	10308295	10308372	.	-	.	Parent=Os07t0276000-01
Chr07	irgsp1_rep	CDS	10307254	10308294	.	-	0	Parent=Os07t0276000-01
Chr07	irgsp1_rep	CDS	10306561	10306716	.	-	0	Parent=Os07t0276000-01
Chr07	irgsp1_rep	three_prime_UTR	10306560	10306560	.	-	.	Parent=Os07t0276000-01
Chr07	irgsp1_rep	three_prime_UTR	10305762	10306467	.	-	.	Parent=Os07t0276000-01
Chr07	irgsp1_rep	mRNA	10312102	10312750	.	+	.	ID=Os07t0276050-00;Name=Os07t0276050-00;Locus_id=Os07g0276050;Note=Hypothetical protein.;Transcript_evidence=CT836066 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os07t0276050-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	10312102	10312114	.	+	.	Parent=Os07t0276050-00
Chr07	irgsp1_rep	CDS	10312115	10312477	.	+	0	Parent=Os07t0276050-00
Chr07	irgsp1_rep	three_prime_UTR	10312478	10312750	.	+	.	Parent=Os07t0276050-00
Chr07	irgsp1_rep	mRNA	10353058	10354344	.	-	.	ID=Os07t0277000-00;Name=Os07t0277000-00;Locus_id=Os07g0277000;Note=FBD domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q69PU2 (UniProt);InterPro=FBD (IPR013596);TENOR=Os07t0277000-00
Chr07	irgsp1_rep	CDS	10354228	10354344	.	-	0	Parent=Os07t0277000-00
Chr07	irgsp1_rep	CDS	10353519	10353653	.	-	0	Parent=Os07t0277000-00
Chr07	irgsp1_rep	CDS	10353058	10353417	.	-	0	Parent=Os07t0277000-00
Chr07	irgsp1_rep	mRNA	10374377	10375097	.	-	.	ID=Os07t0277200-01;Name=Os07t0277200-01;Locus_id=Os07g0277200;Note=Conserved hypothetical protein.;Transcript_evidence=AK058657 (DDBJ%2C Best hit);ORF_evidence=B8B519 (UniProt);NIAS_FLcDNA=001-018-F09;Expression=AK058657;TENOR=Os07t0277200-01;KEGG=Os07t0277200-01
Chr07	irgsp1_rep	five_prime_UTR	10374762	10375097	.	-	.	Parent=Os07t0277200-01
Chr07	irgsp1_rep	CDS	10374441	10374761	.	-	0	Parent=Os07t0277200-01
Chr07	irgsp1_rep	three_prime_UTR	10374377	10374440	.	-	.	Parent=Os07t0277200-01
Chr07	irgsp1_rep	mRNA	10434611	10436013	.	+	.	ID=Os07t0277500-00;Name=Os07t0277500-00;Locus_id=Os07g0277500;Note=FBD domain containing protein.;Transcript_evidence=tplb0062k01 (Wheat FLcDNA);ORF_evidence=B9FWM5 (UniProt);InterPro=FBD (IPR013596);TENOR=Os07t0277500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	10434611	10434686	.	+	.	Parent=Os07t0277500-00
Chr07	irgsp1_rep	CDS	10434687	10435169	.	+	0	Parent=Os07t0277500-00
Chr07	irgsp1_rep	CDS	10435283	10435417	.	+	0	Parent=Os07t0277500-00
Chr07	irgsp1_rep	CDS	10435513	10435935	.	+	0	Parent=Os07t0277500-00
Chr07	irgsp1_rep	three_prime_UTR	10435936	10436013	.	+	.	Parent=Os07t0277500-00
Chr07	irgsp1_rep	mRNA	10440994	10444146	.	+	.	ID=Os07t0277600-01;Name=Os07t0277600-01;Locus_id=Os07g0277600;Note=Conserved hypothetical protein.;Transcript_evidence=AK067031 (DDBJ%2C Best hit),AK100626 (DDBJ%2C Best hit);ORF_evidence=B9ETQ0 (UniProt);NIAS_FLcDNA=J013091L18,J023108O04;TENOR=Os07t0277600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	10440994	10443497	.	+	.	Parent=Os07t0277600-01
Chr07	irgsp1_rep	five_prime_UTR	10443732	10443825	.	+	.	Parent=Os07t0277600-01
Chr07	irgsp1_rep	CDS	10443826	10443954	.	+	0	Parent=Os07t0277600-01
Chr07	irgsp1_rep	three_prime_UTR	10443955	10444146	.	+	.	Parent=Os07t0277600-01
Chr07	irgsp1_rep	mRNA	10441451	10444208	.	+	.	ID=Os07t0277600-02;Name=Os07t0277600-02;Locus_id=Os07g0277600;Note=Conserved hypothetical protein.;Transcript_evidence=AK101048 (DDBJ%2C Best hit);ORF_evidence=B9ETQ0 (UniProt);NIAS_FLcDNA=J033009H10;TENOR=Os07t0277600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	10441451	10442296	.	+	.	Parent=Os07t0277600-02
Chr07	irgsp1_rep	five_prime_UTR	10442386	10443497	.	+	.	Parent=Os07t0277600-02
Chr07	irgsp1_rep	five_prime_UTR	10443732	10443825	.	+	.	Parent=Os07t0277600-02
Chr07	irgsp1_rep	CDS	10443826	10443954	.	+	0	Parent=Os07t0277600-02
Chr07	irgsp1_rep	three_prime_UTR	10443955	10444208	.	+	.	Parent=Os07t0277600-02
Chr07	irgsp1_rep	mRNA	10498474	10502971	.	+	.	ID=Os07t0278400-00;Name=Os07t0278400-00;Locus_id=Os07g0278400;Note=Similar to Tryptophanyl-tRNA synthetase.;Transcript_evidence=BT066142 (DDBJ);ORF_evidence=B6T773 (UniProt);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: tryptophanyl-tRNA aminoacylation (GO:0006436),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: tryptophan-tRNA ligase activity (GO:0004830),Molecular Function: ATP binding (GO:0005524);InterPro=Aminoacyl-tRNA synthetase%2C class I%2C conserved site (IPR001412),Tryptophanyl-tRNA synthetase (IPR002306),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);TENOR=Os07t0278400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	10498474	10498589	.	+	0	Parent=Os07t0278400-00
Chr07	irgsp1_rep	CDS	10498913	10499101	.	+	1	Parent=Os07t0278400-00
Chr07	irgsp1_rep	CDS	10500731	10500749	.	+	1	Parent=Os07t0278400-00
Chr07	irgsp1_rep	three_prime_UTR	10500750	10500943	.	+	.	Parent=Os07t0278400-00
Chr07	irgsp1_rep	three_prime_UTR	10501598	10501690	.	+	.	Parent=Os07t0278400-00
Chr07	irgsp1_rep	three_prime_UTR	10501853	10501933	.	+	.	Parent=Os07t0278400-00
Chr07	irgsp1_rep	three_prime_UTR	10502048	10502119	.	+	.	Parent=Os07t0278400-00
Chr07	irgsp1_rep	three_prime_UTR	10502451	10502519	.	+	.	Parent=Os07t0278400-00
Chr07	irgsp1_rep	three_prime_UTR	10502607	10502717	.	+	.	Parent=Os07t0278400-00
Chr07	irgsp1_rep	three_prime_UTR	10502882	10502971	.	+	.	Parent=Os07t0278400-00
Chr07	irgsp1_rep	mRNA	10512941	10515421	.	+	.	ID=Os07t0278866-00;Name=Os07t0278866-00;Locus_id=Os07g0278866;Note=Similar to OsRAD23-like.;Transcript_evidence=CT836178 (DDBJ%2C Best hit);ORF_evidence=C8TF44 (UniProt);TENOR=Os07t0278866-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	10512941	10513395	.	+	.	Parent=Os07t0278866-00
Chr07	irgsp1_rep	five_prime_UTR	10513425	10513542	.	+	.	Parent=Os07t0278866-00
Chr07	irgsp1_rep	five_prime_UTR	10515073	10515322	.	+	.	Parent=Os07t0278866-00
Chr07	irgsp1_rep	CDS	10515323	10515409	.	+	0	Parent=Os07t0278866-00
Chr07	irgsp1_rep	three_prime_UTR	10515410	10515421	.	+	.	Parent=Os07t0278866-00
Chr07	irgsp1_rep	mRNA	10636445	10642943	.	+	.	ID=Os07t0280200-01;Name=Os07t0280200-01;Locus_id=Os07g0280200;Oryzabase Gene Symbol Synonym(s)=OsACS7%2C ACS7;Oryzabase Gene Name Synonym(s)=acyl-CoA synthetase 7;Note=AMP-dependent synthetase and ligase domain containing protein.;Transcript_evidence=AK108656 (DDBJ%2C Best hit);ORF_evidence=Q69RG7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873),AMP-binding%2C conserved site (IPR020845);NIAS_FLcDNA=002-148-E06;Oryzabase=15672;Expression=AK108656;TENOR=Os07t0280200-01;KEGG=Os07t0280200-01
Chr07	irgsp1_rep	five_prime_UTR	10636445	10636461	.	+	.	Parent=Os07t0280200-01
Chr07	irgsp1_rep	CDS	10636462	10637508	.	+	0	Parent=Os07t0280200-01
Chr07	irgsp1_rep	CDS	10641482	10641668	.	+	0	Parent=Os07t0280200-01
Chr07	irgsp1_rep	CDS	10642133	10642278	.	+	2	Parent=Os07t0280200-01
Chr07	irgsp1_rep	CDS	10642370	10642437	.	+	0	Parent=Os07t0280200-01
Chr07	irgsp1_rep	CDS	10642669	10642897	.	+	1	Parent=Os07t0280200-01
Chr07	irgsp1_rep	three_prime_UTR	10642898	10642943	.	+	.	Parent=Os07t0280200-01
Chr07	irgsp1_rep	mRNA	10636472	10642897	.	-	.	ID=Os07t0280600-00;Name=Os07t0280600-00;Locus_id=Os07g0280600;Note=Hypothetical protein.;Transcript_evidence=tplb0058f21 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0280600-00
Chr07	irgsp1_rep	five_prime_UTR	10642679	10642897	.	-	.	Parent=Os07t0280600-00
Chr07	irgsp1_rep	five_prime_UTR	10642374	10642446	.	-	.	Parent=Os07t0280600-00
Chr07	irgsp1_rep	five_prime_UTR	10642117	10642283	.	-	.	Parent=Os07t0280600-00
Chr07	irgsp1_rep	five_prime_UTR	10641481	10641653	.	-	.	Parent=Os07t0280600-00
Chr07	irgsp1_rep	CDS	10637136	10637507	.	-	0	Parent=Os07t0280600-00
Chr07	irgsp1_rep	three_prime_UTR	10636472	10637135	.	-	.	Parent=Os07t0280600-00
Chr07	irgsp1_rep	mRNA	10678739	10683090	.	-	.	ID=Os07t0281000-01;Name=Os07t0281000-01;Locus_id=Os07g0281000;CGSNL Gene Symbol=C3H49;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 49;Oryzabase Gene Symbol Synonym(s)=OsC3H49;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 49;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK111689 (DDBJ%2C Best hit);ORF_evidence=B7F5T3 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA recognition motif domain (IPR000504),Zinc finger%2C CCCH-type (IPR000571),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023003O14;Oryzabase=8615;Expression=AK111689;TENOR=Os07t0281000-01;KEGG=Os07t0281000-01
Chr07	irgsp1_rep	five_prime_UTR	10683019	10683090	.	-	.	Parent=Os07t0281000-01
Chr07	irgsp1_rep	CDS	10682914	10683018	.	-	0	Parent=Os07t0281000-01
Chr07	irgsp1_rep	CDS	10682096	10682365	.	-	0	Parent=Os07t0281000-01
Chr07	irgsp1_rep	CDS	10681446	10681669	.	-	0	Parent=Os07t0281000-01
Chr07	irgsp1_rep	CDS	10678866	10679727	.	-	1	Parent=Os07t0281000-01
Chr07	irgsp1_rep	three_prime_UTR	10678739	10678865	.	-	.	Parent=Os07t0281000-01
Chr07	irgsp1_rep	mRNA	10693276	10693859	.	-	.	ID=Os07t0281200-01;Name=Os07t0281200-01;Locus_id=Os07g0281200;Note=Conserved hypothetical protein.;Transcript_evidence=AK121421 (DDBJ%2C Best hit);ORF_evidence=A2YK88 (UniProt);NIAS_FLcDNA=J023133M08;Expression=AK121421;TENOR=Os07t0281200-01;KEGG=Os07t0281200-01
Chr07	irgsp1_rep	five_prime_UTR	10693857	10693859	.	-	.	Parent=Os07t0281200-01
Chr07	irgsp1_rep	CDS	10693506	10693856	.	-	0	Parent=Os07t0281200-01
Chr07	irgsp1_rep	three_prime_UTR	10693276	10693505	.	-	.	Parent=Os07t0281200-01
Chr07	irgsp1_rep	mRNA	10693488	10693974	.	+	.	ID=Os07t0281351-00;Name=Os07t0281351-00;Locus_id=Os07g0281351;Note=Hypothetical gene.;Transcript_evidence=EU949342 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0281351-00;KEGG=Os07t0281351-00
Chr07	irgsp1_rep	five_prime_UTR	10693488	10693536	.	+	.	Parent=Os07t0281351-00
Chr07	irgsp1_rep	CDS	10693537	10693932	.	+	0	Parent=Os07t0281351-00
Chr07	irgsp1_rep	three_prime_UTR	10693933	10693974	.	+	.	Parent=Os07t0281351-00
Chr07	irgsp1_rep	mRNA	10716325	10716844	.	-	.	ID=Os07t0281500-01;Name=Os07t0281500-01;Locus_id=Os07g0281500;Note=Non-protein coding transcript.;Transcript_evidence=AK111049 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-175-C05;TENOR=Os07t0281500-01
Chr07	irgsp1_rep	exon	10716325	10716844	.	-	.	Parent=Os07t0281500-01
Chr07	irgsp1_rep	mRNA	10724596	10727138	.	+	.	ID=Os07t0281700-01;Name=Os07t0281700-01;Locus_id=Os07g0281700;Oryzabase Gene Symbol Synonym(s)=AO%2C OsAO%2C AAO%2C OsAAO;Oryzabase Gene Name Synonym(s)=aldehyde oxidase%2C abscisic aldehyde oxidase;Note=Similar to Aldehyde oxidase-2.;Transcript_evidence=AK111275 (DDBJ%2C Best hit);ORF_evidence=O23888 (UniProt);InterPro=Beta-grasp fold%2C ferredoxin-type (IPR012675);NIAS_FLcDNA=002-180-G07;Oryzabase=20888;Expression=AK111275;TENOR=Os07t0281700-01;KEGG=Os07t0281700-01
Chr07	irgsp1_rep	five_prime_UTR	10724596	10724739	.	+	.	Parent=Os07t0281700-01
Chr07	irgsp1_rep	CDS	10724740	10724908	.	+	0	Parent=Os07t0281700-01
Chr07	irgsp1_rep	CDS	10726873	10726898	.	+	2	Parent=Os07t0281700-01
Chr07	irgsp1_rep	three_prime_UTR	10726899	10727138	.	+	.	Parent=Os07t0281700-01
Chr07	irgsp1_rep	mRNA	10735655	10738019	.	+	.	ID=Os07t0281800-01;Name=Os07t0281800-01;Locus_id=Os07g0281800;Oryzabase Gene Symbol Synonym(s)=AO%2C OsAO%2C AAO%2C OsAAO;Oryzabase Gene Name Synonym(s)=aldehyde oxidase%2C abscisic aldehyde oxidase;Note=Similar to Aldehyde oxidase-2.;Transcript_evidence=AK105707 (DDBJ%2C Best hit);ORF_evidence=O23888 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldehyde oxidase/xanthine dehydrogenase%2C molybdopterin binding (IPR008274);NIAS_FLcDNA=001-201-E04;Oryzabase=20888;TENOR=Os07t0281800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	10735655	10735656	.	+	.	Parent=Os07t0281800-01
Chr07	irgsp1_rep	CDS	10735657	10736187	.	+	0	Parent=Os07t0281800-01
Chr07	irgsp1_rep	CDS	10736418	10736513	.	+	0	Parent=Os07t0281800-01
Chr07	irgsp1_rep	CDS	10736615	10736713	.	+	0	Parent=Os07t0281800-01
Chr07	irgsp1_rep	CDS	10737192	10737381	.	+	0	Parent=Os07t0281800-01
Chr07	irgsp1_rep	CDS	10737466	10737698	.	+	2	Parent=Os07t0281800-01
Chr07	irgsp1_rep	three_prime_UTR	10737699	10738019	.	+	.	Parent=Os07t0281800-01
Chr07	irgsp1_rep	mRNA	10738168	10739547	.	-	.	ID=Os07t0281900-01;Name=Os07t0281900-01;Locus_id=Os07g0281900;Note=Conserved hypothetical protein.;Transcript_evidence=AK107372 (DDBJ%2C Best hit);ORF_evidence=Q7XQQ4 (UniProt);NIAS_FLcDNA=002-127-B05;TENOR=Os07t0281900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	10739546	10739547	.	-	.	Parent=Os07t0281900-01
Chr07	irgsp1_rep	CDS	10739165	10739545	.	-	0	Parent=Os07t0281900-01
Chr07	irgsp1_rep	three_prime_UTR	10738168	10739164	.	-	.	Parent=Os07t0281900-01
Chr07	irgsp1_rep	mRNA	10748746	10760846	.	+	.	ID=Os07t0282300-01;Name=Os07t0282300-01;Locus_id=Os07g0282300;Oryzabase Gene Symbol Synonym(s)=OsAAO3%2C AAO3;Oryzabase Gene Name Synonym(s)=aldehyde oxidase 3;Note=Similar to Aldehyde oxidase 1 homolog (Fragment).;Transcript_evidence=AK072847 (DDBJ%2C Best hit);ORF_evidence=O23888 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: metal ion binding (GO:0046872),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: iron-sulfur cluster binding (GO:0051536),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=Aldehyde oxidase/xanthine dehydrogenase%2C a/b hammerhead (IPR000674),Ferredoxin (IPR001041),Molybdopterin dehydrogenase%2C FAD-binding (IPR002346),[2Fe-2S]-binding (IPR002888),CO dehydrogenase flavoprotein%2C C-terminal (IPR005107),2Fe-2S ferredoxin%2C iron-sulphur binding site (IPR006058),Aldehyde oxidase/xanthine dehydrogenase%2C molybdopterin binding (IPR008274),Beta-grasp fold%2C ferredoxin-type (IPR012675),FAD-binding%2C type 2 (IPR016166),CO dehydrogenase flavoprotein-like%2C FAD-binding%2C subdomain 2 (IPR016169);NIAS_FLcDNA=J023142J16;Oryzabase=21721;Expression=AK072847;TENOR=Os07t0282300-01;KEGG=Os07t0282300-01
Chr07	irgsp1_rep	five_prime_UTR	10748746	10748893	.	+	.	Parent=Os07t0282300-01
Chr07	irgsp1_rep	CDS	10748894	10749071	.	+	0	Parent=Os07t0282300-01
Chr07	irgsp1_rep	CDS	10757400	10759052	.	+	2	Parent=Os07t0282300-01
Chr07	irgsp1_rep	CDS	10759169	10759431	.	+	2	Parent=Os07t0282300-01
Chr07	irgsp1_rep	CDS	10759588	10759797	.	+	0	Parent=Os07t0282300-01
Chr07	irgsp1_rep	CDS	10760348	10760578	.	+	0	Parent=Os07t0282300-01
Chr07	irgsp1_rep	three_prime_UTR	10760579	10760846	.	+	.	Parent=Os07t0282300-01
Chr07	irgsp1_rep	mRNA	10762643	10763602	.	+	.	ID=Os07t0282401-00;Name=Os07t0282401-00;Locus_id=Os07g0282401;Note=Similar to Aldehyde oxidase.;Transcript_evidence=ab initio prediction;ORF_evidence=O23887 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldehyde oxidase/xanthine dehydrogenase%2C molybdopterin binding (IPR008274);TENOR=Os07t0282401-00
Chr07	irgsp1_rep	CDS	10762643	10763602	.	+	0	Parent=Os07t0282401-00
Chr07	irgsp1_rep	mRNA	10765848	10767128	.	+	.	ID=Os07t0282500-01;Name=Os07t0282500-01;Locus_id=Os07g0282500;Note=Similar to Aldehyde oxidase 3 (EC 1.2.3.1) (AtAO-3) (AtAO4).;Transcript_evidence=AK058321 (DDBJ%2C Best hit);ORF_evidence=Q6Z351 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldehyde oxidase/xanthine dehydrogenase%2C molybdopterin binding (IPR008274);NIAS_FLcDNA=001-014-B01;Expression=AK058321;TENOR=Os07t0282500-01;KEGG=Os07t0282500-01 (EC:1.2.3.1%2C EC:1.2.3.14)
Chr07	irgsp1_rep	five_prime_UTR	10765848	10766250	.	+	.	Parent=Os07t0282500-01
Chr07	irgsp1_rep	CDS	10766251	10766481	.	+	0	Parent=Os07t0282500-01
Chr07	irgsp1_rep	CDS	10766576	10766626	.	+	0	Parent=Os07t0282500-01
Chr07	irgsp1_rep	three_prime_UTR	10766627	10767128	.	+	.	Parent=Os07t0282500-01
Chr07	irgsp1_rep	mRNA	10801797	10802470	.	+	.	ID=Os07t0282975-00;Name=Os07t0282975-00;Locus_id=Os07g0282975;Note=Non-protein coding transcript.;Transcript_evidence=BT054295 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0282975-00
Chr07	irgsp1_rep	exon	10801797	10802470	.	+	.	Parent=Os07t0282975-00
Chr07	irgsp1_rep	mRNA	10805327	10807392	.	-	.	ID=Os07t0283050-00;Name=Os07t0283050-00;Locus_id=Os07g0283050;Note=Concanavalin A-like lectin/glucanase%2C subgroup domain containing protein.;Transcript_evidence=BT041367 (DDBJ);ORF_evidence=NP_001147473.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os07t0283050-00;KEGG=Os07t0283050-00
Chr07	irgsp1_rep	CDS	10805383	10807392	.	-	0	Parent=Os07t0283050-00
Chr07	irgsp1_rep	three_prime_UTR	10805327	10805382	.	-	.	Parent=Os07t0283050-00
Chr07	irgsp1_rep	mRNA	10811145	10813161	.	-	.	ID=Os07t0283125-00;Name=Os07t0283125-00;Locus_id=Os07g0283125;Note=Similar to lectin-like receptor kinase 7.;Transcript_evidence=AK249356 (DDBJ);ORF_evidence=Q6YWI8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os07t0283125-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	10813159	10813161	.	-	.	Parent=Os07t0283125-00
Chr07	irgsp1_rep	CDS	10811149	10813158	.	-	0	Parent=Os07t0283125-00
Chr07	irgsp1_rep	three_prime_UTR	10811145	10811148	.	-	.	Parent=Os07t0283125-00
Chr07	irgsp1_rep	mRNA	10817332	10825104	.	-	.	ID=Os07t0283200-01;Name=Os07t0283200-01;Locus_id=Os07g0283200;Note=Similar to cDNA clone:002-113-H04%2C full insert sequence.;Transcript_evidence=AK067873 (DDBJ%2C Best hit);ORF_evidence=B7EZJ3 (UniProt);NIAS_FLcDNA=J013126L21;TENOR=Os07t0283200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	10824942	10825104	.	-	.	Parent=Os07t0283200-01
Chr07	irgsp1_rep	CDS	10824933	10824941	.	-	0	Parent=Os07t0283200-01
Chr07	irgsp1_rep	CDS	10824734	10824804	.	-	0	Parent=Os07t0283200-01
Chr07	irgsp1_rep	CDS	10823026	10823218	.	-	1	Parent=Os07t0283200-01
Chr07	irgsp1_rep	CDS	10822843	10822928	.	-	0	Parent=Os07t0283200-01
Chr07	irgsp1_rep	CDS	10822054	10822138	.	-	1	Parent=Os07t0283200-01
Chr07	irgsp1_rep	CDS	10820975	10821053	.	-	0	Parent=Os07t0283200-01
Chr07	irgsp1_rep	CDS	10820716	10820843	.	-	2	Parent=Os07t0283200-01
Chr07	irgsp1_rep	CDS	10819064	10819150	.	-	0	Parent=Os07t0283200-01
Chr07	irgsp1_rep	CDS	10818841	10818953	.	-	0	Parent=Os07t0283200-01
Chr07	irgsp1_rep	CDS	10818371	10818501	.	-	1	Parent=Os07t0283200-01
Chr07	irgsp1_rep	CDS	10818049	10818161	.	-	2	Parent=Os07t0283200-01
Chr07	irgsp1_rep	three_prime_UTR	10818034	10818048	.	-	.	Parent=Os07t0283200-01
Chr07	irgsp1_rep	three_prime_UTR	10817332	10817760	.	-	.	Parent=Os07t0283200-01
Chr07	irgsp1_rep	mRNA	10817759	10825082	.	-	.	ID=Os07t0283200-02;Name=Os07t0283200-02;Locus_id=Os07g0283200;Note=Conserved hypothetical protein.;Transcript_evidence=AK106663 (DDBJ%2C Best hit);ORF_evidence=B9FWN4 (UniProt);NIAS_FLcDNA=002-113-H04;Expression=AK106663;TENOR=Os07t0283200-02;KEGG=Os07t0283200-02
Chr07	irgsp1_rep	five_prime_UTR	10824817	10825082	.	-	.	Parent=Os07t0283200-02
Chr07	irgsp1_rep	CDS	10824734	10824816	.	-	0	Parent=Os07t0283200-02
Chr07	irgsp1_rep	CDS	10823026	10823218	.	-	1	Parent=Os07t0283200-02
Chr07	irgsp1_rep	CDS	10822843	10822928	.	-	0	Parent=Os07t0283200-02
Chr07	irgsp1_rep	CDS	10822054	10822138	.	-	1	Parent=Os07t0283200-02
Chr07	irgsp1_rep	CDS	10820975	10821053	.	-	0	Parent=Os07t0283200-02
Chr07	irgsp1_rep	CDS	10820716	10820843	.	-	2	Parent=Os07t0283200-02
Chr07	irgsp1_rep	CDS	10819064	10819150	.	-	0	Parent=Os07t0283200-02
Chr07	irgsp1_rep	CDS	10818841	10818953	.	-	0	Parent=Os07t0283200-02
Chr07	irgsp1_rep	CDS	10818371	10818501	.	-	1	Parent=Os07t0283200-02
Chr07	irgsp1_rep	CDS	10818049	10818161	.	-	2	Parent=Os07t0283200-02
Chr07	irgsp1_rep	three_prime_UTR	10817759	10818048	.	-	.	Parent=Os07t0283200-02
Chr07	irgsp1_rep	mRNA	10841308	10845737	.	-	.	ID=Os07t0283600-00;Name=Os07t0283600-00;Locus_id=Os07g0283600;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001175143.1 (RefSeq);TENOR=Os07t0283600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	10845546	10845737	.	-	0	Parent=Os07t0283600-00
Chr07	irgsp1_rep	CDS	10844801	10845283	.	-	0	Parent=Os07t0283600-00
Chr07	irgsp1_rep	CDS	10844578	10844718	.	-	0	Parent=Os07t0283600-00
Chr07	irgsp1_rep	CDS	10844162	10844500	.	-	0	Parent=Os07t0283600-00
Chr07	irgsp1_rep	CDS	10843778	10843967	.	-	0	Parent=Os07t0283600-00
Chr07	irgsp1_rep	CDS	10843257	10843727	.	-	2	Parent=Os07t0283600-00
Chr07	irgsp1_rep	CDS	10842862	10843160	.	-	2	Parent=Os07t0283600-00
Chr07	irgsp1_rep	CDS	10842535	10842621	.	-	0	Parent=Os07t0283600-00
Chr07	irgsp1_rep	CDS	10842078	10842184	.	-	0	Parent=Os07t0283600-00
Chr07	irgsp1_rep	CDS	10841308	10841422	.	-	1	Parent=Os07t0283600-00
Chr07	irgsp1_rep	mRNA	10924115	10924961	.	+	.	ID=Os07t0284700-00;Name=Os07t0284700-00;Locus_id=Os07g0284700;Note=Conserved hypothetical protein.;Transcript_evidence=EU970115 (DDBJ);ORF_evidence=Q8GVN0 (UniProt);TENOR=Os07t0284700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	10924115	10924957	.	+	0	Parent=Os07t0284700-00
Chr07	irgsp1_rep	three_prime_UTR	10924958	10924961	.	+	.	Parent=Os07t0284700-00
Chr07	irgsp1_rep	mRNA	10936014	10941697	.	-	.	ID=Os07t0284950-00;Name=Os07t0284950-00;Locus_id=Os07g0284950;Note=Conserved hypothetical protein.;Transcript_evidence=AK102912 (DDBJ%2C Secondary hit);ORF_evidence=NP_001050931.1 (RefSeq);TENOR=Os07t0284950-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	10941288	10941697	.	-	.	Parent=Os07t0284950-00
Chr07	irgsp1_rep	five_prime_UTR	10940631	10941220	.	-	.	Parent=Os07t0284950-00
Chr07	irgsp1_rep	five_prime_UTR	10939685	10940534	.	-	.	Parent=Os07t0284950-00
Chr07	irgsp1_rep	CDS	10939562	10939684	.	-	0	Parent=Os07t0284950-00
Chr07	irgsp1_rep	three_prime_UTR	10939497	10939561	.	-	.	Parent=Os07t0284950-00
Chr07	irgsp1_rep	three_prime_UTR	10938761	10938809	.	-	.	Parent=Os07t0284950-00
Chr07	irgsp1_rep	three_prime_UTR	10937010	10937607	.	-	.	Parent=Os07t0284950-00
Chr07	irgsp1_rep	three_prime_UTR	10936484	10936545	.	-	.	Parent=Os07t0284950-00
Chr07	irgsp1_rep	three_prime_UTR	10936014	10936327	.	-	.	Parent=Os07t0284950-00
Chr07	irgsp1_rep	mRNA	10954093	10955885	.	-	.	ID=Os07t0285200-01;Name=Os07t0285200-01;Locus_id=Os07g0285200;Oryzabase Gene Symbol Synonym(s)=OsFbox363%2C Os_F0353;Oryzabase Gene Name Synonym(s)=F-box protein 363;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK073171 (DDBJ%2C Best hit);ORF_evidence=A2YKA2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),FBD-like (IPR006566),Leucine-rich repeat 2 (IPR013101),FBD (IPR013596),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033022I08;Oryzabase=17139;Expression=AK073171;TENOR=Os07t0285200-01;KEGG=Os07t0285200-01
Chr07	irgsp1_rep	five_prime_UTR	10955841	10955885	.	-	.	Parent=Os07t0285200-01
Chr07	irgsp1_rep	CDS	10954917	10955840	.	-	0	Parent=Os07t0285200-01
Chr07	irgsp1_rep	CDS	10954696	10954830	.	-	0	Parent=Os07t0285200-01
Chr07	irgsp1_rep	CDS	10954247	10954603	.	-	0	Parent=Os07t0285200-01
Chr07	irgsp1_rep	three_prime_UTR	10954093	10954246	.	-	.	Parent=Os07t0285200-01
Chr07	irgsp1_rep	mRNA	10970226	10973167	.	-	.	ID=Os07t0285450-00;Name=Os07t0285450-00;Locus_id=Os07g0285450;Note=Conserved hypothetical protein.;Transcript_evidence=AK366691 (DDBJ);ORF_evidence=Q7EZ49 (UniProt);TENOR=Os07t0285450-00
Chr07	irgsp1_rep	CDS	10972364	10973167	.	-	0	Parent=Os07t0285450-00
Chr07	irgsp1_rep	CDS	10972128	10972262	.	-	0	Parent=Os07t0285450-00
Chr07	irgsp1_rep	CDS	10970461	10970505	.	-	0	Parent=Os07t0285450-00
Chr07	irgsp1_rep	three_prime_UTR	10970226	10970460	.	-	.	Parent=Os07t0285450-00
Chr07	irgsp1_rep	mRNA	10979123	10980878	.	-	.	ID=Os07t0285700-01;Name=Os07t0285700-01;Locus_id=Os07g0285700;Oryzabase Gene Symbol Synonym(s)=OsFbox364%2C Os_F0107;Oryzabase Gene Name Synonym(s)=F-box protein 364;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK108035 (DDBJ%2C Best hit);ORF_evidence=B8B571 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),FBD-like (IPR006566),FBD (IPR013596),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-137-C04;Oryzabase=17140;Expression=AK108035;TENOR=Os07t0285700-01;KEGG=Os07t0285700-01
Chr07	irgsp1_rep	five_prime_UTR	10980838	10980878	.	-	.	Parent=Os07t0285700-01
Chr07	irgsp1_rep	CDS	10979944	10980837	.	-	0	Parent=Os07t0285700-01
Chr07	irgsp1_rep	CDS	10979723	10979857	.	-	0	Parent=Os07t0285700-01
Chr07	irgsp1_rep	CDS	10979205	10979603	.	-	0	Parent=Os07t0285700-01
Chr07	irgsp1_rep	three_prime_UTR	10979123	10979204	.	-	.	Parent=Os07t0285700-01
Chr07	irgsp1_rep	mRNA	10984157	10985524	.	-	.	ID=Os07t0285800-00;Name=Os07t0285800-00;Locus_id=Os07g0285800;Note=Protein of unknown function DUF1719%2C Oryza sativa domain containing protein.;Transcript_evidence=AK335777 (DDBJ);ORF_evidence=Q7EZ47 (UniProt);InterPro=Protein of unknown function DUF1719%2C Oryza sativa (IPR013181);TENOR=Os07t0285800-00
Chr07	irgsp1_rep	CDS	10984157	10985524	.	-	0	Parent=Os07t0285800-00
Chr07	irgsp1_rep	mRNA	10988939	10994274	.	-	.	ID=Os07t0285900-00;Name=Os07t0285900-00;Locus_id=Os07g0285900;Oryzabase Gene Symbol Synonym(s)=OsFbox365%2C Os_F0205;Oryzabase Gene Name Synonym(s)=F-box protein 365;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=FP098775 (DDBJ);ORF_evidence=NP_001059384.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Armadillo-like helical (IPR011989),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17141;TENOR=Os07t0285900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	10993455	10994274	.	-	0	Parent=Os07t0285900-00
Chr07	irgsp1_rep	CDS	10988939	10989354	.	-	2	Parent=Os07t0285900-00
Chr07	irgsp1_rep	mRNA	10991914	10992578	.	+	.	ID=Os07t0286000-00;Name=Os07t0286000-00;Locus_id=Os07g0286000;Note=Hypothetical conserved gene.;Transcript_evidence=AK108629 (DDBJ%2C Secondary hit);ORF_evidence=Q69S99 (UniProt);Expression=AK108629;TENOR=Os07t0286000-00;KEGG=Os07t0286000-00
Chr07	irgsp1_rep	five_prime_UTR	10991914	10992120	.	+	.	Parent=Os07t0286000-00
Chr07	irgsp1_rep	CDS	10992121	10992273	.	+	0	Parent=Os07t0286000-00
Chr07	irgsp1_rep	CDS	10992315	10992422	.	+	0	Parent=Os07t0286000-00
Chr07	irgsp1_rep	three_prime_UTR	10992423	10992578	.	+	.	Parent=Os07t0286000-00
Chr07	irgsp1_rep	mRNA	11053694	11054339	.	-	.	ID=Os07t0286950-00;Name=Os07t0286950-00;Locus_id=Os07g0286950;Note=Similar to SULTR3%3B5 (SULFATE TRANSPORTER 3%3B5)%3B sulfate transmembrane transporter.;Transcript_evidence=EU951891 (DDBJ);ORF_evidence=NP_568377.1 (RefSeq);GO=Biological Process: sulfate transport (GO:0008272),Cellular Component: membrane (GO:0016020),Molecular Function: secondary active sulfate transmembrane transporter activity (GO:0008271);InterPro=Sulphate anion transporter%2C conserved site (IPR018045);TENOR=Os07t0286950-00
Chr07	irgsp1_rep	CDS	11053949	11054339	.	-	0	Parent=Os07t0286950-00
Chr07	irgsp1_rep	CDS	11053694	11053863	.	-	2	Parent=Os07t0286950-00
Chr07	irgsp1_rep	mRNA	11060327	11061780	.	+	.	ID=Os07t0287000-01;Name=Os07t0287000-01;Locus_id=Os07g0287000;Oryzabase Gene Symbol Synonym(s)=OsFbox367%2C Os_F0432;Oryzabase Gene Name Synonym(s)=F-box protein 367;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK108052 (DDBJ%2C Best hit);ORF_evidence=A2YKB3 (UniProt);InterPro=FBD-like (IPR006566),FBD (IPR013596),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-137-H04;Oryzabase=17143;Expression=AK108052;TENOR=Os07t0287000-01;KEGG=Os07t0287000-01
Chr07	irgsp1_rep	five_prime_UTR	11060327	11060327	.	+	.	Parent=Os07t0287000-01
Chr07	irgsp1_rep	CDS	11060328	11061308	.	+	0	Parent=Os07t0287000-01
Chr07	irgsp1_rep	CDS	11061395	11061757	.	+	0	Parent=Os07t0287000-01
Chr07	irgsp1_rep	three_prime_UTR	11061758	11061780	.	+	.	Parent=Os07t0287000-01
Chr07	irgsp1_rep	mRNA	11064783	11076991	.	+	.	ID=Os07t0287100-01;Name=Os07t0287100-01;Locus_id=Os07g0287100;Note=Conserved hypothetical protein.;Transcript_evidence=AK066004 (DDBJ%2C Best hit);ORF_evidence=B9FWP5 (UniProt);NIAS_FLcDNA=J013046P22;TENOR=Os07t0287100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	11064783	11064886	.	+	.	Parent=Os07t0287100-01
Chr07	irgsp1_rep	CDS	11064887	11064913	.	+	0	Parent=Os07t0287100-01
Chr07	irgsp1_rep	CDS	11065793	11065939	.	+	0	Parent=Os07t0287100-01
Chr07	irgsp1_rep	CDS	11066224	11066267	.	+	0	Parent=Os07t0287100-01
Chr07	irgsp1_rep	CDS	11066758	11066795	.	+	1	Parent=Os07t0287100-01
Chr07	irgsp1_rep	CDS	11067630	11067720	.	+	2	Parent=Os07t0287100-01
Chr07	irgsp1_rep	CDS	11068716	11068821	.	+	1	Parent=Os07t0287100-01
Chr07	irgsp1_rep	CDS	11068905	11068975	.	+	0	Parent=Os07t0287100-01
Chr07	irgsp1_rep	CDS	11069064	11069172	.	+	1	Parent=Os07t0287100-01
Chr07	irgsp1_rep	three_prime_UTR	11069173	11069452	.	+	.	Parent=Os07t0287100-01
Chr07	irgsp1_rep	three_prime_UTR	11070572	11070643	.	+	.	Parent=Os07t0287100-01
Chr07	irgsp1_rep	three_prime_UTR	11070746	11070847	.	+	.	Parent=Os07t0287100-01
Chr07	irgsp1_rep	three_prime_UTR	11070932	11071714	.	+	.	Parent=Os07t0287100-01
Chr07	irgsp1_rep	three_prime_UTR	11074171	11074287	.	+	.	Parent=Os07t0287100-01
Chr07	irgsp1_rep	three_prime_UTR	11074826	11074882	.	+	.	Parent=Os07t0287100-01
Chr07	irgsp1_rep	three_prime_UTR	11076639	11076991	.	+	.	Parent=Os07t0287100-01
Chr07	irgsp1_rep	mRNA	11090524	11091253	.	+	.	ID=Os07t0287400-01;Name=Os07t0287400-01;Locus_id=Os07g0287400;Oryzabase Gene Symbol Synonym(s)=OsLTPd3%2C OsLtpIV.3;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein d3%2C lipid transfer protein d3%2C type D non-specific lipid transfer protein 3;Note=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor domain containing protein.;Transcript_evidence=AK105204 (DDBJ%2C Best hit);ORF_evidence=NP_001146924.1 (RefSeq);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=001-108-F06;Oryzabase=13544;Expression=AK105204;TENOR=Os07t0287400-01;KEGG=Os07t0287400-01
Chr07	irgsp1_rep	five_prime_UTR	11090524	11090643	.	+	.	Parent=Os07t0287400-01
Chr07	irgsp1_rep	CDS	11090644	11090958	.	+	0	Parent=Os07t0287400-01
Chr07	irgsp1_rep	three_prime_UTR	11090959	11091253	.	+	.	Parent=Os07t0287400-01
Chr07	irgsp1_rep	mRNA	11110315	11111150	.	+	.	ID=Os07t0287800-01;Name=Os07t0287800-01;Locus_id=Os07g0287800;Note=Conserved hypothetical protein.;Transcript_evidence=AK108333 (DDBJ%2C Best hit);ORF_evidence=B9FWP6 (UniProt);NIAS_FLcDNA=002-142-A03;TENOR=Os07t0287800-01
Chr07	irgsp1_rep	five_prime_UTR	11110315	11110696	.	+	.	Parent=Os07t0287800-01
Chr07	irgsp1_rep	CDS	11110697	11111150	.	+	0	Parent=Os07t0287800-01
Chr07	irgsp1_rep	mRNA	11170896	11176660	.	+	.	ID=Os07t0288700-01;Name=Os07t0288700-01;Locus_id=Os07g0288700;CGSNL Gene Symbol=ABCG17;CGSNL Gene Name=ABC TRANSPORTER G FAMILY MEMBER 17;Oryzabase Gene Symbol Synonym(s)=OsABCG17;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 17;Note=Similar to white-brown-complex ABC transporter family.;Transcript_evidence=AK110787 (DDBJ%2C Best hit);ORF_evidence=XP_002336087.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=002-171-C08;Oryzabase=11994;Expression=AK110787;TENOR=Os07t0288700-01;KEGG=Os07t0288700-01
Chr07	irgsp1_rep	five_prime_UTR	11170896	11170915	.	+	.	Parent=Os07t0288700-01
Chr07	irgsp1_rep	CDS	11170916	11171447	.	+	0	Parent=Os07t0288700-01
Chr07	irgsp1_rep	CDS	11175858	11175937	.	+	2	Parent=Os07t0288700-01
Chr07	irgsp1_rep	CDS	11176024	11176500	.	+	0	Parent=Os07t0288700-01
Chr07	irgsp1_rep	three_prime_UTR	11176501	11176660	.	+	.	Parent=Os07t0288700-01
Chr07	irgsp1_rep	mRNA	11170898	11182966	.	+	.	ID=Os07t0288700-02;Name=Os07t0288700-02;Locus_id=Os07g0288700;CGSNL Gene Symbol=ABCG17;CGSNL Gene Name=ABC TRANSPORTER G FAMILY MEMBER 17;Oryzabase Gene Symbol Synonym(s)=OsABCG17;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 17;Note=ABC transporter-like domain containing protein.;Transcript_evidence=AK100175 (DDBJ%2C Best hit);ORF_evidence=XP_002306299.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC-2 type transporter (IPR013525),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=J023027L20;Oryzabase=11994;Expression=AK100175;TENOR=Os07t0288700-02;KEGG=Os07t0288700-02
Chr07	irgsp1_rep	five_prime_UTR	11170898	11170915	.	+	.	Parent=Os07t0288700-02
Chr07	irgsp1_rep	CDS	11170916	11171447	.	+	0	Parent=Os07t0288700-02
Chr07	irgsp1_rep	CDS	11175858	11175937	.	+	2	Parent=Os07t0288700-02
Chr07	irgsp1_rep	CDS	11176024	11176488	.	+	0	Parent=Os07t0288700-02
Chr07	irgsp1_rep	CDS	11181328	11181411	.	+	0	Parent=Os07t0288700-02
Chr07	irgsp1_rep	CDS	11181539	11181664	.	+	0	Parent=Os07t0288700-02
Chr07	irgsp1_rep	CDS	11181768	11181956	.	+	0	Parent=Os07t0288700-02
Chr07	irgsp1_rep	CDS	11182034	11182120	.	+	0	Parent=Os07t0288700-02
Chr07	irgsp1_rep	CDS	11182186	11182812	.	+	0	Parent=Os07t0288700-02
Chr07	irgsp1_rep	three_prime_UTR	11182813	11182966	.	+	.	Parent=Os07t0288700-02
Chr07	irgsp1_rep	mRNA	11170911	11182781	.	-	.	ID=Os07t0289050-00;Name=Os07t0289050-00;Locus_id=Os07g0289050;Note=Hypothetical protein.;Transcript_evidence=tplb0025k13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0289050-00
Chr07	irgsp1_rep	five_prime_UTR	11182202	11182781	.	-	.	Parent=Os07t0289050-00
Chr07	irgsp1_rep	five_prime_UTR	11182011	11182139	.	-	.	Parent=Os07t0289050-00
Chr07	irgsp1_rep	five_prime_UTR	11181768	11181934	.	-	.	Parent=Os07t0289050-00
Chr07	irgsp1_rep	five_prime_UTR	11181559	11181663	.	-	.	Parent=Os07t0289050-00
Chr07	irgsp1_rep	five_prime_UTR	11181308	11181431	.	-	.	Parent=Os07t0289050-00
Chr07	irgsp1_rep	five_prime_UTR	11176426	11176471	.	-	.	Parent=Os07t0289050-00
Chr07	irgsp1_rep	CDS	11176015	11176425	.	-	0	Parent=Os07t0289050-00
Chr07	irgsp1_rep	three_prime_UTR	11176010	11176014	.	-	.	Parent=Os07t0289050-00
Chr07	irgsp1_rep	three_prime_UTR	11175856	11175919	.	-	.	Parent=Os07t0289050-00
Chr07	irgsp1_rep	three_prime_UTR	11171285	11171444	.	-	.	Parent=Os07t0289050-00
Chr07	irgsp1_rep	three_prime_UTR	11170911	11171113	.	-	.	Parent=Os07t0289050-00
Chr07	irgsp1_rep	mRNA	11218098	11221304	.	+	.	ID=Os07t0289400-01;Name=Os07t0289400-01;Locus_id=Os07g0289400;Note=Conserved hypothetical protein.;Transcript_evidence=AK103773 (DDBJ%2C Best hit);ORF_evidence=NP_001046674.1 (RefSeq);NIAS_FLcDNA=J033143M03;TENOR=Os07t0289400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	11218098	11218098	.	+	.	Parent=Os07t0289400-01
Chr07	irgsp1_rep	CDS	11218099	11218311	.	+	0	Parent=Os07t0289400-01
Chr07	irgsp1_rep	three_prime_UTR	11218312	11218624	.	+	.	Parent=Os07t0289400-01
Chr07	irgsp1_rep	three_prime_UTR	11218719	11218845	.	+	.	Parent=Os07t0289400-01
Chr07	irgsp1_rep	three_prime_UTR	11220899	11221304	.	+	.	Parent=Os07t0289400-01
Chr07	irgsp1_rep	mRNA	11222033	11225287	.	-	.	ID=Os07t0289600-01;Name=Os07t0289600-01;Locus_id=Os07g0289600;Note=Conserved hypothetical protein.;Transcript_evidence=AK069087 (DDBJ%2C Best hit);ORF_evidence=NP_001066934.1 (RefSeq);NIAS_FLcDNA=J023009C13;TENOR=Os07t0289600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	11225021	11225287	.	-	.	Parent=Os07t0289600-01
Chr07	irgsp1_rep	CDS	11224844	11225020	.	-	0	Parent=Os07t0289600-01
Chr07	irgsp1_rep	three_prime_UTR	11224807	11224843	.	-	.	Parent=Os07t0289600-01
Chr07	irgsp1_rep	three_prime_UTR	11222033	11224012	.	-	.	Parent=Os07t0289600-01
Chr07	irgsp1_rep	mRNA	11226679	11227370	.	+	.	ID=Os07t0289800-01;Name=Os07t0289800-01;Locus_id=Os07g0289800;Note=Conserved hypothetical protein.;Transcript_evidence=AK242480 (DDBJ%2C Best hit);ORF_evidence=NP_001175144.1 (RefSeq);NIAS_FLcDNA=J080305A01;TENOR=Os07t0289800-01;KEGG=Os07t0289800-01
Chr07	irgsp1_rep	five_prime_UTR	11226679	11226887	.	+	.	Parent=Os07t0289800-01
Chr07	irgsp1_rep	CDS	11226888	11227295	.	+	0	Parent=Os07t0289800-01
Chr07	irgsp1_rep	three_prime_UTR	11227296	11227370	.	+	.	Parent=Os07t0289800-01
Chr07	irgsp1_rep	mRNA	11241360	11242082	.	+	.	ID=Os07t0290200-01;Name=Os07t0290200-01;Locus_id=Os07g0290200;Oryzabase Gene Symbol Synonym(s)=OsLTPd4%2C OsLtpIV.4;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein d4%2C lipid transfer protein d4%2C type D non-specific lipid transfer protein 4;Note=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor domain containing protein.;Transcript_evidence=AK062503 (DDBJ%2C Best hit);ORF_evidence=NP_001148038.1 (RefSeq);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=001-104-B03;Oryzabase=13545;Expression=AK062503;TENOR=Os07t0290200-01;KEGG=Os07t0290200-01
Chr07	irgsp1_rep	five_prime_UTR	11241360	11241443	.	+	.	Parent=Os07t0290200-01
Chr07	irgsp1_rep	CDS	11241444	11241758	.	+	0	Parent=Os07t0290200-01
Chr07	irgsp1_rep	three_prime_UTR	11241759	11242082	.	+	.	Parent=Os07t0290200-01
Chr07	irgsp1_rep	mRNA	11252021	11252469	.	+	.	ID=Os07t0290500-00;Name=Os07t0290500-00;Locus_id=Os07g0290500;Note=Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor domain containing protein.;Transcript_evidence=EU957442 (DDBJ);ORF_evidence=NP_001151008.1 (RefSeq);TENOR=Os07t0290500-00;KEGG=Os07t0290500-00
Chr07	irgsp1_rep	five_prime_UTR	11252021	11252116	.	+	.	Parent=Os07t0290500-00
Chr07	irgsp1_rep	CDS	11252117	11252323	.	+	0	Parent=Os07t0290500-00
Chr07	irgsp1_rep	three_prime_UTR	11252324	11252469	.	+	.	Parent=Os07t0290500-00
Chr07	irgsp1_rep	mRNA	11268929	11273490	.	+	.	ID=Os07t0290800-01;Name=Os07t0290800-01;Locus_id=Os07g0290800;Note=Tic22-like family protein.;Transcript_evidence=AK071498 (DDBJ%2C Best hit);ORF_evidence=A2YKC3 (UniProt);InterPro=Tic22-like (IPR007378);NIAS_FLcDNA=J023099F08;Expression=AK071498;TENOR=Os07t0290800-01;KEGG=Os07t0290800-01
Chr07	irgsp1_rep	five_prime_UTR	11268929	11268977	.	+	.	Parent=Os07t0290800-01
Chr07	irgsp1_rep	CDS	11268978	11269451	.	+	0	Parent=Os07t0290800-01
Chr07	irgsp1_rep	CDS	11270340	11270414	.	+	0	Parent=Os07t0290800-01
Chr07	irgsp1_rep	CDS	11270870	11270929	.	+	0	Parent=Os07t0290800-01
Chr07	irgsp1_rep	CDS	11272665	11272724	.	+	0	Parent=Os07t0290800-01
Chr07	irgsp1_rep	CDS	11272806	11272886	.	+	0	Parent=Os07t0290800-01
Chr07	irgsp1_rep	CDS	11272974	11273009	.	+	0	Parent=Os07t0290800-01
Chr07	irgsp1_rep	CDS	11273261	11273353	.	+	0	Parent=Os07t0290800-01
Chr07	irgsp1_rep	three_prime_UTR	11273354	11273490	.	+	.	Parent=Os07t0290800-01
Chr07	irgsp1_rep	mRNA	11280349	11285318	.	-	.	ID=Os07t0291100-01;Name=Os07t0291100-01;Locus_id=Os07g0291100;Note=Transport protein particle (TRAPP) component domain containing protein.;Transcript_evidence=AK063779 (DDBJ%2C Best hit);ORF_evidence=NP_001152926.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Transport protein particle (TRAPP) component (IPR007194),NO signalling/Golgi transport  ligand-binding domain (IPR024096);NIAS_FLcDNA=001-121-D05;Expression=AK063779;TENOR=Os07t0291100-01;KEGG=Os07t0291100-01
Chr07	irgsp1_rep	five_prime_UTR	11285215	11285318	.	-	.	Parent=Os07t0291100-01
Chr07	irgsp1_rep	CDS	11285063	11285214	.	-	0	Parent=Os07t0291100-01
Chr07	irgsp1_rep	CDS	11282139	11282256	.	-	1	Parent=Os07t0291100-01
Chr07	irgsp1_rep	CDS	11281836	11282064	.	-	0	Parent=Os07t0291100-01
Chr07	irgsp1_rep	CDS	11280655	11280683	.	-	2	Parent=Os07t0291100-01
Chr07	irgsp1_rep	three_prime_UTR	11280349	11280654	.	-	.	Parent=Os07t0291100-01
Chr07	irgsp1_rep	mRNA	11280388	11285307	.	-	.	ID=Os07t0291100-02;Name=Os07t0291100-02;Locus_id=Os07g0291100;Note=Similar to cDNA clone:J013066M10%2C full insert sequence.;Transcript_evidence=AK072735 (DDBJ%2C Best hit);ORF_evidence=NP_001152926.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Transport protein particle (TRAPP) component (IPR007194),NO signalling/Golgi transport  ligand-binding domain (IPR024096);NIAS_FLcDNA=J023141D23;Expression=AK072735;TENOR=Os07t0291100-02;KEGG=Os07t0291100-02
Chr07	irgsp1_rep	five_prime_UTR	11285063	11285307	.	-	.	Parent=Os07t0291100-02
Chr07	irgsp1_rep	five_prime_UTR	11282280	11282298	.	-	.	Parent=Os07t0291100-02
Chr07	irgsp1_rep	CDS	11282139	11282279	.	-	0	Parent=Os07t0291100-02
Chr07	irgsp1_rep	CDS	11281836	11282064	.	-	0	Parent=Os07t0291100-02
Chr07	irgsp1_rep	CDS	11280655	11280683	.	-	2	Parent=Os07t0291100-02
Chr07	irgsp1_rep	three_prime_UTR	11280388	11280654	.	-	.	Parent=Os07t0291100-02
Chr07	irgsp1_rep	mRNA	11288040	11292046	.	-	.	ID=Os07t0291200-01;Name=Os07t0291200-01;Locus_id=Os07g0291200;Note=B-cell receptor-associated 31-like domain containing protein.;Transcript_evidence=AK064969 (DDBJ%2C Best hit);ORF_evidence=B6U1I6 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Cellular Component: endoplasmic reticulum (GO:0005783),Cellular Component: integral to membrane (GO:0016021);InterPro=B-cell receptor-associated 31-like (IPR008417);NIAS_FLcDNA=J013001B09;Expression=AK064969;TENOR=Os07t0291200-01;KEGG=Os07t0291200-01
Chr07	irgsp1_rep	five_prime_UTR	11291548	11292046	.	-	.	Parent=Os07t0291200-01
Chr07	irgsp1_rep	CDS	11291125	11291547	.	-	0	Parent=Os07t0291200-01
Chr07	irgsp1_rep	three_prime_UTR	11288040	11291124	.	-	.	Parent=Os07t0291200-01
Chr07	irgsp1_rep	mRNA	11293774	11294244	.	+	.	ID=Os07t0291300-00;Name=Os07t0291300-00;Locus_id=Os07g0291300;Note=Glycosyl transferase%2C family 20 domain containing protein.;Transcript_evidence=BT085510 (DDBJ);ORF_evidence=GeneMark;GO=Biological Process: trehalose biosynthetic process (GO:0005992),Molecular Function: catalytic activity (GO:0003824);InterPro=Glycosyl transferase%2C family 20 (IPR001830);TENOR=Os07t0291300-00
Chr07	irgsp1_rep	five_prime_UTR	11293774	11293862	.	+	.	Parent=Os07t0291300-00
Chr07	irgsp1_rep	CDS	11293863	11294244	.	+	0	Parent=Os07t0291300-00
Chr07	irgsp1_rep	mRNA	11295181	11297365	.	+	.	ID=Os07t0291400-01;Name=Os07t0291400-01;Locus_id=Os07g0291400;Note=Conserved hypothetical protein.;Transcript_evidence=AK110971 (DDBJ%2C Best hit);ORF_evidence=Q6YUK4 (UniProt);NIAS_FLcDNA=002-174-B11;TENOR=Os07t0291400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	11295181	11295235	.	+	.	Parent=Os07t0291400-01
Chr07	irgsp1_rep	CDS	11295236	11295616	.	+	0	Parent=Os07t0291400-01
Chr07	irgsp1_rep	three_prime_UTR	11295617	11297365	.	+	.	Parent=Os07t0291400-01
Chr07	irgsp1_rep	mRNA	11317434	11318404	.	-	.	ID=Os07t0291750-00;Name=Os07t0291750-00;Locus_id=Os07g0291750;Note=Similar to CYP71B26%3B electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding.;Transcript_evidence=BT041209 (DDBJ);ORF_evidence=NP_189260.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);TENOR=Os07t0291750-00
Chr07	irgsp1_rep	five_prime_UTR	11318327	11318404	.	-	.	Parent=Os07t0291750-00
Chr07	irgsp1_rep	CDS	11317997	11318326	.	-	0	Parent=Os07t0291750-00
Chr07	irgsp1_rep	CDS	11317649	11317702	.	-	0	Parent=Os07t0291750-00
Chr07	irgsp1_rep	three_prime_UTR	11317434	11317648	.	-	.	Parent=Os07t0291750-00
Chr07	irgsp1_rep	mRNA	11340607	11341017	.	-	.	ID=Os07t0292100-00;Name=Os07t0292100-00;Locus_id=Os07g0292100;Note=Similar to CYP71B6 (CYTOCHROME P450 71B6)%3B electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_179995.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);TENOR=Os07t0292100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	11340607	11341017	.	-	0	Parent=Os07t0292100-00
Chr07	irgsp1_rep	mRNA	11359293	11362158	.	+	.	ID=Os07t0292800-01;Name=Os07t0292800-01;Locus_id=Os07g0292800;Note=Ribosomal protein L24e domain containing protein.;Transcript_evidence=AK073670 (DDBJ%2C Best hit);ORF_evidence=NP_001151450.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L24e-related (IPR000988),TRASH (IPR011017),Ribosomal protein L24e domain (IPR023441),Ribosomal protein L24e%2C conserved site (IPR023442);NIAS_FLcDNA=J033051L19;Expression=AK073670;TENOR=Os07t0292800-01;KEGG=Os07t0292800-01
Chr07	irgsp1_rep	five_prime_UTR	11359293	11359480	.	+	.	Parent=Os07t0292800-01
Chr07	irgsp1_rep	CDS	11359481	11359561	.	+	0	Parent=Os07t0292800-01
Chr07	irgsp1_rep	CDS	11361320	11361433	.	+	0	Parent=Os07t0292800-01
Chr07	irgsp1_rep	CDS	11361533	11361669	.	+	0	Parent=Os07t0292800-01
Chr07	irgsp1_rep	CDS	11361748	11361907	.	+	1	Parent=Os07t0292800-01
Chr07	irgsp1_rep	three_prime_UTR	11361908	11362158	.	+	.	Parent=Os07t0292800-01
Chr07	irgsp1_rep	mRNA	11383084	11388213	.	-	.	ID=Os07t0293000-00;Name=Os07t0293000-00;Locus_id=Os07g0293000;Note=Hypothetical conserved gene.;Transcript_evidence=CT836150 (DDBJ%2C Best hit);ORF_evidence=Q84ZF7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);TENOR=Os07t0293000-00;KEGG=Os07t0293000-00
Chr07	irgsp1_rep	five_prime_UTR	11388190	11388213	.	-	.	Parent=Os07t0293000-00
Chr07	irgsp1_rep	CDS	11387807	11388189	.	-	0	Parent=Os07t0293000-00
Chr07	irgsp1_rep	CDS	11383188	11383797	.	-	1	Parent=Os07t0293000-00
Chr07	irgsp1_rep	three_prime_UTR	11383084	11383187	.	-	.	Parent=Os07t0293000-00
Chr07	irgsp1_rep	mRNA	11432125	11435900	.	-	.	ID=Os07t0294100-00;Name=Os07t0294100-00;Locus_id=Os07g0294100;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R1W1 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os07t0294100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	11435083	11435900	.	-	0	Parent=Os07t0294100-00
Chr07	irgsp1_rep	CDS	11432441	11433632	.	-	1	Parent=Os07t0294100-00
Chr07	irgsp1_rep	CDS	11432265	11432327	.	-	0	Parent=Os07t0294100-00
Chr07	irgsp1_rep	CDS	11432125	11432175	.	-	0	Parent=Os07t0294100-00
Chr07	irgsp1_rep	mRNA	11451121	11451610	.	+	.	ID=Os07t0294300-01;Name=Os07t0294300-01;Locus_id=Os07g0294300;Note=Conserved hypothetical protein.;Transcript_evidence=AK241028 (DDBJ%2C Best hit);ORF_evidence=B8B585 (UniProt);NIAS_FLcDNA=J065057L16;TENOR=Os07t0294300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	11451121	11451403	.	+	.	Parent=Os07t0294300-01
Chr07	irgsp1_rep	CDS	11451404	11451589	.	+	0	Parent=Os07t0294300-01
Chr07	irgsp1_rep	three_prime_UTR	11451590	11451610	.	+	.	Parent=Os07t0294300-01
Chr07	irgsp1_rep	mRNA	11481243	11481896	.	+	.	ID=Os07t0294600-01;Name=Os07t0294600-01;Locus_id=Os07g0294600;Note=Protein prenyltransferase domain containing protein.;Transcript_evidence=AK108740 (DDBJ%2C Best hit);ORF_evidence=XP_002888839.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-150-E03;Expression=AK108740;TENOR=Os07t0294600-01;KEGG=Os07t0294600-01
Chr07	irgsp1_rep	five_prime_UTR	11481243	11481243	.	+	.	Parent=Os07t0294600-01
Chr07	irgsp1_rep	CDS	11481244	11481708	.	+	0	Parent=Os07t0294600-01
Chr07	irgsp1_rep	three_prime_UTR	11481709	11481896	.	+	.	Parent=Os07t0294600-01
Chr07	irgsp1_rep	mRNA	11484899	11485467	.	+	.	ID=Os07t0294650-01;Name=Os07t0294650-01;Locus_id=Os07g0294650;Note=Non-protein coding transcript.;Transcript_evidence=AK242530 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080315G16;TENOR=Os07t0294650-01
Chr07	irgsp1_rep	exon	11484899	11485467	.	+	.	Parent=Os07t0294650-01
Chr07	irgsp1_rep	mRNA	11485815	11487161	.	-	.	ID=Os07t0294700-01;Name=Os07t0294700-01;Locus_id=Os07g0294700;Note=Conserved hypothetical protein.;Transcript_evidence=AK110963 (DDBJ%2C Best hit);ORF_evidence=A2YKE4 (UniProt);NIAS_FLcDNA=002-174-B02;Expression=AK110963;TENOR=Os07t0294700-01;KEGG=Os07t0294700-01
Chr07	irgsp1_rep	five_prime_UTR	11486924	11487161	.	-	.	Parent=Os07t0294700-01
Chr07	irgsp1_rep	CDS	11486570	11486923	.	-	0	Parent=Os07t0294700-01
Chr07	irgsp1_rep	three_prime_UTR	11485815	11486569	.	-	.	Parent=Os07t0294700-01
Chr07	irgsp1_rep	mRNA	11496882	11505135	.	+	.	ID=Os07t0294800-01;Name=Os07t0294800-01;Locus_id=Os07g0294800;Note=Similar to regulatory protein.;Transcript_evidence=AK065831 (DDBJ%2C Best hit);ORF_evidence=NP_001150863.1 (RefSeq);InterPro=Nucleotide-diphospho-sugar transferase (IPR005069);NIAS_FLcDNA=J013037A06;Expression=AK065831;TENOR=Os07t0294800-01;KEGG=Os07t0294800-01
Chr07	irgsp1_rep	five_prime_UTR	11496882	11496947	.	+	.	Parent=Os07t0294800-01
Chr07	irgsp1_rep	CDS	11496948	11497292	.	+	0	Parent=Os07t0294800-01
Chr07	irgsp1_rep	CDS	11503019	11503408	.	+	0	Parent=Os07t0294800-01
Chr07	irgsp1_rep	CDS	11504367	11504852	.	+	0	Parent=Os07t0294800-01
Chr07	irgsp1_rep	three_prime_UTR	11504853	11505135	.	+	.	Parent=Os07t0294800-01
Chr07	irgsp1_rep	mRNA	11505780	11509628	.	-	.	ID=Os07t0295000-01;Name=Os07t0295000-01;Locus_id=Os07g0295000;Note=Mitochondrial carrier protein domain containing protein.;Transcript_evidence=AK071844 (DDBJ%2C Best hit),AK099295 (DDBJ%2C Best hit);ORF_evidence=B6TYC7 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial inner membrane (GO:0005743),Molecular Function: binding (GO:0005488);InterPro=Mitochondrial carrier protein (IPR002067),Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J023115D04,J023137D03;Expression=AK071844;TENOR=Os07t0295000-01;KEGG=Os07t0295000-01
Chr07	irgsp1_rep	five_prime_UTR	11509556	11509628	.	-	.	Parent=Os07t0295000-01
Chr07	irgsp1_rep	five_prime_UTR	11509336	11509401	.	-	.	Parent=Os07t0295000-01
Chr07	irgsp1_rep	CDS	11509284	11509335	.	-	0	Parent=Os07t0295000-01
Chr07	irgsp1_rep	CDS	11508932	11509014	.	-	2	Parent=Os07t0295000-01
Chr07	irgsp1_rep	CDS	11508574	11508650	.	-	0	Parent=Os07t0295000-01
Chr07	irgsp1_rep	CDS	11508157	11508247	.	-	1	Parent=Os07t0295000-01
Chr07	irgsp1_rep	CDS	11507970	11508023	.	-	0	Parent=Os07t0295000-01
Chr07	irgsp1_rep	CDS	11507800	11507895	.	-	0	Parent=Os07t0295000-01
Chr07	irgsp1_rep	CDS	11507622	11507711	.	-	0	Parent=Os07t0295000-01
Chr07	irgsp1_rep	CDS	11506951	11507002	.	-	0	Parent=Os07t0295000-01
Chr07	irgsp1_rep	CDS	11506540	11506601	.	-	2	Parent=Os07t0295000-01
Chr07	irgsp1_rep	CDS	11506375	11506455	.	-	0	Parent=Os07t0295000-01
Chr07	irgsp1_rep	CDS	11506076	11506192	.	-	0	Parent=Os07t0295000-01
Chr07	irgsp1_rep	three_prime_UTR	11505780	11506075	.	-	.	Parent=Os07t0295000-01
Chr07	irgsp1_rep	mRNA	11514045	11518129	.	-	.	ID=Os07t0295200-01;Name=Os07t0295200-01;Locus_id=Os07g0295200;Note=Protein of unknown function DUF167 family protein.;Transcript_evidence=AK059375 (DDBJ%2C Best hit),AK102836 (DDBJ%2C Best hit);ORF_evidence=B6UH37 (UniProt);InterPro=Protein of unknown function DUF167 (IPR003746);NIAS_FLcDNA=001-026-F06,J033109K02;Expression=AK059375;TENOR=Os07t0295200-01;KEGG=Os07t0295200-01
Chr07	irgsp1_rep	five_prime_UTR	11517954	11518129	.	-	.	Parent=Os07t0295200-01
Chr07	irgsp1_rep	CDS	11517839	11517953	.	-	0	Parent=Os07t0295200-01
Chr07	irgsp1_rep	CDS	11516138	11516252	.	-	2	Parent=Os07t0295200-01
Chr07	irgsp1_rep	CDS	11515081	11515234	.	-	1	Parent=Os07t0295200-01
Chr07	irgsp1_rep	CDS	11514889	11514985	.	-	0	Parent=Os07t0295200-01
Chr07	irgsp1_rep	CDS	11514620	11514708	.	-	2	Parent=Os07t0295200-01
Chr07	irgsp1_rep	CDS	11514393	11514461	.	-	0	Parent=Os07t0295200-01
Chr07	irgsp1_rep	CDS	11514250	11514309	.	-	0	Parent=Os07t0295200-01
Chr07	irgsp1_rep	three_prime_UTR	11514045	11514249	.	-	.	Parent=Os07t0295200-01
Chr07	irgsp1_rep	mRNA	11528001	11533587	.	+	.	ID=Os07t0295400-01;Name=Os07t0295400-01;Locus_id=Os07g0295400;Note=Conserved hypothetical protein.;Transcript_evidence=AK073103 (DDBJ%2C Best hit);ORF_evidence=B8B589 (UniProt);NIAS_FLcDNA=J033024G02;Expression=AK073103;TENOR=Os07t0295400-01;KEGG=Os07t0295400-01
Chr07	irgsp1_rep	five_prime_UTR	11528001	11528089	.	+	.	Parent=Os07t0295400-01
Chr07	irgsp1_rep	CDS	11528090	11528527	.	+	0	Parent=Os07t0295400-01
Chr07	irgsp1_rep	CDS	11528616	11528669	.	+	0	Parent=Os07t0295400-01
Chr07	irgsp1_rep	CDS	11528769	11528828	.	+	0	Parent=Os07t0295400-01
Chr07	irgsp1_rep	CDS	11528927	11529037	.	+	0	Parent=Os07t0295400-01
Chr07	irgsp1_rep	CDS	11532308	11532373	.	+	0	Parent=Os07t0295400-01
Chr07	irgsp1_rep	CDS	11532451	11532537	.	+	0	Parent=Os07t0295400-01
Chr07	irgsp1_rep	CDS	11532636	11532737	.	+	0	Parent=Os07t0295400-01
Chr07	irgsp1_rep	CDS	11532835	11532984	.	+	0	Parent=Os07t0295400-01
Chr07	irgsp1_rep	CDS	11533084	11533227	.	+	0	Parent=Os07t0295400-01
Chr07	irgsp1_rep	three_prime_UTR	11533228	11533587	.	+	.	Parent=Os07t0295400-01
Chr07	irgsp1_rep	mRNA	11528034	11533692	.	+	.	ID=Os07t0295400-02;Name=Os07t0295400-02;Locus_id=Os07g0295400;Note=Conserved hypothetical protein.;Transcript_evidence=AK060569 (DDBJ%2C Best hit);ORF_evidence=B8B589 (UniProt);NIAS_FLcDNA=001-023-C01;Expression=AK060569;TENOR=Os07t0295400-02;KEGG=Os07t0295400-02
Chr07	irgsp1_rep	five_prime_UTR	11528034	11528089	.	+	.	Parent=Os07t0295400-02
Chr07	irgsp1_rep	CDS	11528090	11528527	.	+	0	Parent=Os07t0295400-02
Chr07	irgsp1_rep	CDS	11528616	11528669	.	+	0	Parent=Os07t0295400-02
Chr07	irgsp1_rep	CDS	11528769	11528828	.	+	0	Parent=Os07t0295400-02
Chr07	irgsp1_rep	CDS	11528927	11529037	.	+	0	Parent=Os07t0295400-02
Chr07	irgsp1_rep	CDS	11532308	11532373	.	+	0	Parent=Os07t0295400-02
Chr07	irgsp1_rep	CDS	11532451	11532537	.	+	0	Parent=Os07t0295400-02
Chr07	irgsp1_rep	CDS	11532636	11532737	.	+	0	Parent=Os07t0295400-02
Chr07	irgsp1_rep	CDS	11532835	11532984	.	+	0	Parent=Os07t0295400-02
Chr07	irgsp1_rep	CDS	11533084	11533227	.	+	0	Parent=Os07t0295400-02
Chr07	irgsp1_rep	three_prime_UTR	11533228	11533692	.	+	.	Parent=Os07t0295400-02
Chr07	irgsp1_rep	mRNA	11535119	11544724	.	+	.	ID=Os07t0295601-00;Name=Os07t0295601-00;Locus_id=Os07g0295601;Note=Hypothetical conserved gene.;Transcript_evidence=CU406865 (DDBJ%2C Best hit);ORF_evidence=NP_001177065.1 (RefSeq);TENOR=Os07t0295601-00;KEGG=Os07t0295601-00
Chr07	irgsp1_rep	five_prime_UTR	11535119	11535431	.	+	.	Parent=Os07t0295601-00
Chr07	irgsp1_rep	five_prime_UTR	11542157	11542174	.	+	.	Parent=Os07t0295601-00
Chr07	irgsp1_rep	CDS	11542175	11542240	.	+	0	Parent=Os07t0295601-00
Chr07	irgsp1_rep	CDS	11542890	11542937	.	+	0	Parent=Os07t0295601-00
Chr07	irgsp1_rep	three_prime_UTR	11542938	11542975	.	+	.	Parent=Os07t0295601-00
Chr07	irgsp1_rep	three_prime_UTR	11544401	11544724	.	+	.	Parent=Os07t0295601-00
Chr07	irgsp1_rep	mRNA	11551204	11570246	.	-	.	ID=Os07t0295800-01;Name=Os07t0295800-01;Locus_id=Os07g0295800;Note=Similar to peptidase.;Transcript_evidence=AK241273 (DDBJ%2C Best hit);ORF_evidence=NP_176909.3 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: peptidase activity (GO:0008233);InterPro=Peptidase M28 (IPR007484);NIAS_FLcDNA=J065132N12;TENOR=Os07t0295800-01;KEGG=Os07t0295800-01
Chr07	irgsp1_rep	five_prime_UTR	11570153	11570246	.	-	.	Parent=Os07t0295800-01
Chr07	irgsp1_rep	CDS	11569907	11570152	.	-	0	Parent=Os07t0295800-01
Chr07	irgsp1_rep	CDS	11569731	11569816	.	-	0	Parent=Os07t0295800-01
Chr07	irgsp1_rep	CDS	11568612	11568713	.	-	1	Parent=Os07t0295800-01
Chr07	irgsp1_rep	CDS	11567596	11567702	.	-	1	Parent=Os07t0295800-01
Chr07	irgsp1_rep	CDS	11567401	11567501	.	-	2	Parent=Os07t0295800-01
Chr07	irgsp1_rep	CDS	11566757	11566844	.	-	0	Parent=Os07t0295800-01
Chr07	irgsp1_rep	CDS	11565654	11565742	.	-	2	Parent=Os07t0295800-01
Chr07	irgsp1_rep	CDS	11563088	11563227	.	-	0	Parent=Os07t0295800-01
Chr07	irgsp1_rep	CDS	11562842	11563004	.	-	1	Parent=Os07t0295800-01
Chr07	irgsp1_rep	CDS	11562567	11562702	.	-	0	Parent=Os07t0295800-01
Chr07	irgsp1_rep	CDS	11561247	11561343	.	-	2	Parent=Os07t0295800-01
Chr07	irgsp1_rep	CDS	11558135	11558213	.	-	1	Parent=Os07t0295800-01
Chr07	irgsp1_rep	CDS	11557804	11557863	.	-	0	Parent=Os07t0295800-01
Chr07	irgsp1_rep	CDS	11557381	11557499	.	-	0	Parent=Os07t0295800-01
Chr07	irgsp1_rep	CDS	11556396	11556520	.	-	1	Parent=Os07t0295800-01
Chr07	irgsp1_rep	CDS	11555901	11556122	.	-	2	Parent=Os07t0295800-01
Chr07	irgsp1_rep	CDS	11554926	11555086	.	-	2	Parent=Os07t0295800-01
Chr07	irgsp1_rep	CDS	11553258	11553415	.	-	0	Parent=Os07t0295800-01
Chr07	irgsp1_rep	CDS	11553077	11553159	.	-	1	Parent=Os07t0295800-01
Chr07	irgsp1_rep	CDS	11552906	11552991	.	-	2	Parent=Os07t0295800-01
Chr07	irgsp1_rep	CDS	11551353	11551496	.	-	0	Parent=Os07t0295800-01
Chr07	irgsp1_rep	three_prime_UTR	11551204	11551352	.	-	.	Parent=Os07t0295800-01
Chr07	irgsp1_rep	mRNA	11575105	11586354	.	+	.	ID=Os07t0296000-01;Name=Os07t0296000-01;Locus_id=Os07g0296000;Note=Conserved hypothetical protein.;Transcript_evidence=AK073416 (DDBJ%2C Best hit);ORF_evidence=B8B586 (UniProt);NIAS_FLcDNA=J033040D17;Oryzabase=20474;TENOR=Os07t0296000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	11575105	11575550	.	+	.	Parent=Os07t0296000-01
Chr07	irgsp1_rep	five_prime_UTR	11576651	11576737	.	+	.	Parent=Os07t0296000-01
Chr07	irgsp1_rep	five_prime_UTR	11583037	11585424	.	+	.	Parent=Os07t0296000-01
Chr07	irgsp1_rep	CDS	11585425	11585718	.	+	0	Parent=Os07t0296000-01
Chr07	irgsp1_rep	three_prime_UTR	11585719	11586354	.	+	.	Parent=Os07t0296000-01
Chr07	irgsp1_rep	mRNA	11575105	11580068	.	+	.	ID=Os07t0296000-02;Name=Os07t0296000-02;Locus_id=Os07g0296000;Note=Conserved hypothetical protein.;Transcript_evidence=AK121178 (DDBJ%2C Best hit);ORF_evidence=NP_001173737.1 (RefSeq);NIAS_FLcDNA=J023083G22;Oryzabase=20474;TENOR=Os07t0296000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	11575105	11575550	.	+	.	Parent=Os07t0296000-02
Chr07	irgsp1_rep	five_prime_UTR	11576651	11576976	.	+	.	Parent=Os07t0296000-02
Chr07	irgsp1_rep	CDS	11576977	11577309	.	+	0	Parent=Os07t0296000-02
Chr07	irgsp1_rep	three_prime_UTR	11577310	11580068	.	+	.	Parent=Os07t0296000-02
Chr07	irgsp1_rep	mRNA	11582603	11585928	.	-	.	ID=Os07t0296100-01;Name=Os07t0296100-01;Locus_id=Os07g0296100;Note=Conserved hypothetical protein.;Transcript_evidence=AK242822 (DDBJ%2C Best hit);ORF_evidence=NP_001059410.2 (RefSeq);NIAS_FLcDNA=J090064H24;TENOR=Os07t0296100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	11585616	11585928	.	-	.	Parent=Os07t0296100-01
Chr07	irgsp1_rep	CDS	11585336	11585615	.	-	0	Parent=Os07t0296100-01
Chr07	irgsp1_rep	CDS	11584903	11584937	.	-	2	Parent=Os07t0296100-01
Chr07	irgsp1_rep	three_prime_UTR	11584818	11584902	.	-	.	Parent=Os07t0296100-01
Chr07	irgsp1_rep	three_prime_UTR	11582603	11583196	.	-	.	Parent=Os07t0296100-01
Chr07	irgsp1_rep	mRNA	11592341	11596865	.	-	.	ID=Os07t0296200-01;Name=Os07t0296200-01;Locus_id=Os07g0296200;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK064362 (DDBJ%2C Best hit);ORF_evidence=NP_564565.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA recognition motif domain (IPR000504),Zinc finger%2C RanBP2-type (IPR001876),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=002-108-B11;Expression=AK064362;TENOR=Os07t0296200-01;KEGG=Os07t0296200-01
Chr07	irgsp1_rep	five_prime_UTR	11596753	11596865	.	-	.	Parent=Os07t0296200-01
Chr07	irgsp1_rep	five_prime_UTR	11596175	11596181	.	-	.	Parent=Os07t0296200-01
Chr07	irgsp1_rep	CDS	11596058	11596174	.	-	0	Parent=Os07t0296200-01
Chr07	irgsp1_rep	CDS	11595599	11595942	.	-	0	Parent=Os07t0296200-01
Chr07	irgsp1_rep	CDS	11595273	11595482	.	-	1	Parent=Os07t0296200-01
Chr07	irgsp1_rep	CDS	11594605	11594688	.	-	1	Parent=Os07t0296200-01
Chr07	irgsp1_rep	CDS	11593338	11593419	.	-	1	Parent=Os07t0296200-01
Chr07	irgsp1_rep	CDS	11593141	11593267	.	-	0	Parent=Os07t0296200-01
Chr07	irgsp1_rep	CDS	11592559	11592779	.	-	2	Parent=Os07t0296200-01
Chr07	irgsp1_rep	three_prime_UTR	11592341	11592558	.	-	.	Parent=Os07t0296200-01
Chr07	irgsp1_rep	mRNA	11592363	11596835	.	-	.	ID=Os07t0296200-02;Name=Os07t0296200-02;Locus_id=Os07g0296200;Note=Similar to predicted protein.;Transcript_evidence=AK103153 (DDBJ%2C Best hit);ORF_evidence=NP_564565.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033120O12;Expression=AK103153;TENOR=Os07t0296200-02;KEGG=Os07t0296200-02
Chr07	irgsp1_rep	five_prime_UTR	11596753	11596835	.	-	.	Parent=Os07t0296200-02
Chr07	irgsp1_rep	five_prime_UTR	11596175	11596181	.	-	.	Parent=Os07t0296200-02
Chr07	irgsp1_rep	CDS	11596041	11596174	.	-	0	Parent=Os07t0296200-02
Chr07	irgsp1_rep	CDS	11595825	11595942	.	-	1	Parent=Os07t0296200-02
Chr07	irgsp1_rep	three_prime_UTR	11595599	11595824	.	-	.	Parent=Os07t0296200-02
Chr07	irgsp1_rep	three_prime_UTR	11595273	11595482	.	-	.	Parent=Os07t0296200-02
Chr07	irgsp1_rep	three_prime_UTR	11594605	11594688	.	-	.	Parent=Os07t0296200-02
Chr07	irgsp1_rep	three_prime_UTR	11593338	11593419	.	-	.	Parent=Os07t0296200-02
Chr07	irgsp1_rep	three_prime_UTR	11593141	11593267	.	-	.	Parent=Os07t0296200-02
Chr07	irgsp1_rep	three_prime_UTR	11592363	11592779	.	-	.	Parent=Os07t0296200-02
Chr07	irgsp1_rep	mRNA	11615698	11616086	.	+	.	ID=Os07t0296800-00;Name=Os07t0296800-00;Locus_id=Os07g0296800;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001059412.1 (RefSeq);TENOR=Os07t0296800-00
Chr07	irgsp1_rep	CDS	11615698	11615828	.	+	0	Parent=Os07t0296800-00
Chr07	irgsp1_rep	CDS	11615912	11616086	.	+	1	Parent=Os07t0296800-00
Chr07	irgsp1_rep	mRNA	11619075	11620909	.	+	.	ID=Os07t0296900-01;Name=Os07t0296900-01;Locus_id=Os07g0296900;RAP-DB Gene Symbol Synonym(s)=MEG2;RAP-DB Gene Name Synonym(s)=Maternally Expressed Gene2;CGSNL Gene Symbol=MEG2;CGSNL Gene Name=MATERNALLY EXPRESSED GENE 2;Oryzabase Gene Symbol Synonym(s)=OsMEG2%2C MEG2%2C OsMEG2;Oryzabase Gene Name Synonym(s)=Maternally Expressed Gene2%2C Maternally Expressed Gene2;Note=Regulation of nutrient metabolism and endosperm development;Transcript_evidence=AK241908;ORF_evidence=Q6YSV5;NIAS_FLcDNA=J075050I18;Manual Curation=April 30%2C 2017;Literature_PMID=28295376;Oryzabase=22607,22611;TENOR=Os07t0296900-01;KEGG=Os07t0296900-01
Chr07	irgsp1_rep	five_prime_UTR	11619075	11619139	.	+	.	Parent=Os07t0296900-01
Chr07	irgsp1_rep	CDS	11619140	11619208	.	+	0	Parent=Os07t0296900-01
Chr07	irgsp1_rep	CDS	11619343	11619591	.	+	0	Parent=Os07t0296900-01
Chr07	irgsp1_rep	CDS	11619932	11619962	.	+	0	Parent=Os07t0296900-01
Chr07	irgsp1_rep	CDS	11620234	11620278	.	+	2	Parent=Os07t0296900-01
Chr07	irgsp1_rep	CDS	11620706	11620770	.	+	2	Parent=Os07t0296900-01
Chr07	irgsp1_rep	three_prime_UTR	11620771	11620909	.	+	.	Parent=Os07t0296900-01
Chr07	irgsp1_rep	mRNA	11627408	11628385	.	+	.	ID=Os07t0297100-01;Name=Os07t0297100-01;Locus_id=Os07g0297100;Oryzabase Gene Symbol Synonym(s)=OsM6%2C M6%2C OsM6a;Oryzabase Gene Name Synonym(s)=single domain MDC protein 6%2C single MATH domain containing protein 6;Note=MATH domain containing protein.;Transcript_evidence=AK071440 (DDBJ%2C Best hit);ORF_evidence=A2Y3V4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=MATH (IPR002083),TRAF-like (IPR008974),TRAF-type (IPR013322);NIAS_FLcDNA=J023091E23;Oryzabase=21187;Expression=AK071440;TENOR=Os07t0297100-01;KEGG=Os07t0297100-01
Chr07	irgsp1_rep	five_prime_UTR	11627408	11627497	.	+	.	Parent=Os07t0297100-01
Chr07	irgsp1_rep	CDS	11627498	11628166	.	+	0	Parent=Os07t0297100-01
Chr07	irgsp1_rep	three_prime_UTR	11628167	11628385	.	+	.	Parent=Os07t0297100-01
Chr07	irgsp1_rep	mRNA	11628743	11629835	.	-	.	ID=Os07t0297200-01;Name=Os07t0297200-01;Locus_id=Os07g0297200;Note=Hypothetical protein.;Transcript_evidence=AK242753 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090050L01;TENOR=Os07t0297200-01;KEGG=Os07t0297200-01
Chr07	irgsp1_rep	five_prime_UTR	11629785	11629835	.	-	.	Parent=Os07t0297200-01
Chr07	irgsp1_rep	CDS	11629464	11629784	.	-	0	Parent=Os07t0297200-01
Chr07	irgsp1_rep	three_prime_UTR	11628743	11629463	.	-	.	Parent=Os07t0297200-01
Chr07	irgsp1_rep	mRNA	11632185	11635933	.	-	.	ID=Os07t0297300-00;Name=Os07t0297300-00;Locus_id=Os07g0297300;Note=Similar to copper ion binding / methyltransferase.;Transcript_evidence=AK375478 (DDBJ);ORF_evidence=NP_176641.2 (RefSeq);GO=Biological Process: translation (GO:0006412),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Ribosomal protein Rsm22%2C bacterial-type (IPR015324);TENOR=Os07t0297300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	11635663	11635933	.	-	0	Parent=Os07t0297300-00
Chr07	irgsp1_rep	CDS	11635292	11635569	.	-	2	Parent=Os07t0297300-00
Chr07	irgsp1_rep	CDS	11635123	11635196	.	-	0	Parent=Os07t0297300-00
Chr07	irgsp1_rep	CDS	11634946	11635040	.	-	1	Parent=Os07t0297300-00
Chr07	irgsp1_rep	CDS	11634095	11634192	.	-	2	Parent=Os07t0297300-00
Chr07	irgsp1_rep	CDS	11633878	11633961	.	-	0	Parent=Os07t0297300-00
Chr07	irgsp1_rep	CDS	11633694	11633774	.	-	0	Parent=Os07t0297300-00
Chr07	irgsp1_rep	CDS	11633490	11633594	.	-	0	Parent=Os07t0297300-00
Chr07	irgsp1_rep	CDS	11633320	11633415	.	-	0	Parent=Os07t0297300-00
Chr07	irgsp1_rep	CDS	11632830	11632909	.	-	0	Parent=Os07t0297300-00
Chr07	irgsp1_rep	CDS	11632603	11632691	.	-	1	Parent=Os07t0297300-00
Chr07	irgsp1_rep	CDS	11632189	11632526	.	-	2	Parent=Os07t0297300-00
Chr07	irgsp1_rep	three_prime_UTR	11632185	11632188	.	-	.	Parent=Os07t0297300-00
Chr07	irgsp1_rep	mRNA	11632476	11635220	.	+	.	ID=Os07t0297325-00;Name=Os07t0297325-00;Locus_id=Os07g0297325;Note=Non-protein coding transcript.;Transcript_evidence=BT084765 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0297325-00
Chr07	irgsp1_rep	exon	11632476	11632520	.	+	.	Parent=Os07t0297325-00
Chr07	irgsp1_rep	exon	11632595	11632677	.	+	.	Parent=Os07t0297325-00
Chr07	irgsp1_rep	exon	11632816	11633249	.	+	.	Parent=Os07t0297325-00
Chr07	irgsp1_rep	exon	11633366	11633594	.	+	.	Parent=Os07t0297325-00
Chr07	irgsp1_rep	exon	11633694	11633772	.	+	.	Parent=Os07t0297325-00
Chr07	irgsp1_rep	exon	11633876	11633951	.	+	.	Parent=Os07t0297325-00
Chr07	irgsp1_rep	exon	11634088	11634177	.	+	.	Parent=Os07t0297325-00
Chr07	irgsp1_rep	exon	11634934	11635220	.	+	.	Parent=Os07t0297325-00
Chr07	irgsp1_rep	mRNA	11642552	11644280	.	+	.	ID=Os07t0297400-01;Name=Os07t0297400-01;Locus_id=Os07g0297400;Note=Conserved hypothetical protein.;Transcript_evidence=AK101219 (DDBJ%2C Best hit);ORF_evidence=B9F9Y7 (UniProt);NIAS_FLcDNA=J033031C14;TENOR=Os07t0297400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	11642552	11643881	.	+	.	Parent=Os07t0297400-01
Chr07	irgsp1_rep	CDS	11643882	11644259	.	+	0	Parent=Os07t0297400-01
Chr07	irgsp1_rep	three_prime_UTR	11644260	11644280	.	+	.	Parent=Os07t0297400-01
Chr07	irgsp1_rep	mRNA	11643354	11644280	.	+	.	ID=Os07t0297400-02;Name=Os07t0297400-02;Locus_id=Os07g0297400;Note=Conserved hypothetical protein.;Transcript_evidence=AK059367 (DDBJ%2C Best hit);ORF_evidence=B9F9Y7 (UniProt);NIAS_FLcDNA=001-026-E08;TENOR=Os07t0297400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	11643354	11643881	.	+	.	Parent=Os07t0297400-02
Chr07	irgsp1_rep	CDS	11643882	11644259	.	+	0	Parent=Os07t0297400-02
Chr07	irgsp1_rep	three_prime_UTR	11644260	11644280	.	+	.	Parent=Os07t0297400-02
Chr07	irgsp1_rep	mRNA	11645020	11645718	.	-	.	ID=Os07t0297500-00;Name=Os07t0297500-00;Locus_id=Os07g0297500;CGSNL Gene Symbol=ADF8;CGSNL Gene Name=ACTIN DEPOLYMERIZING FACTOR 8;Oryzabase Gene Symbol Synonym(s)=OsADF8%2C OsADF8a%2C OsADF8b;Oryzabase Gene Name Synonym(s)=actin depolymerizing factor 8;Note=Similar to 001-125-G01%2C full insert sequence.;Transcript_evidence=BT083913 (DDBJ);ORF_evidence=B7E9E6 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: actin binding (GO:0003779);InterPro=Actin-binding%2C cofilin/tropomyosin type (IPR002108);Oryzabase=12507;TENOR=Os07t0297500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	11645020	11645718	.	-	0	Parent=Os07t0297500-00
Chr07	irgsp1_rep	mRNA	11684748	11687264	.	-	.	ID=Os07t0298100-01;Name=Os07t0298100-01;Locus_id=Os07g0298100;Note=Conserved hypothetical protein.;Transcript_evidence=AK071774 (DDBJ%2C Best hit);ORF_evidence=B8B592 (UniProt);NIAS_FLcDNA=J023109C12;Expression=AK071774;TENOR=Os07t0298100-01;KEGG=Os07t0298100-01
Chr07	irgsp1_rep	five_prime_UTR	11687128	11687264	.	-	.	Parent=Os07t0298100-01
Chr07	irgsp1_rep	five_prime_UTR	11686876	11687028	.	-	.	Parent=Os07t0298100-01
Chr07	irgsp1_rep	five_prime_UTR	11686301	11686378	.	-	.	Parent=Os07t0298100-01
Chr07	irgsp1_rep	five_prime_UTR	11686218	11686224	.	-	.	Parent=Os07t0298100-01
Chr07	irgsp1_rep	CDS	11685580	11686217	.	-	0	Parent=Os07t0298100-01
Chr07	irgsp1_rep	CDS	11684917	11685178	.	-	1	Parent=Os07t0298100-01
Chr07	irgsp1_rep	three_prime_UTR	11684748	11684916	.	-	.	Parent=Os07t0298100-01
Chr07	irgsp1_rep	mRNA	11704682	11705223	.	+	.	ID=Os07t0298400-01;Name=Os07t0298400-01;Locus_id=Os07g0298400;Note=Similar to AT.I.24-6 protein (Fragment).;Transcript_evidence=AK241851 (DDBJ%2C Best hit);ORF_evidence=Q96310 (UniProt);InterPro=Protein of unknown function DUF3339 (IPR021775);NIAS_FLcDNA=J065215C20;TENOR=Os07t0298400-01;KEGG=Os07t0298400-01
Chr07	irgsp1_rep	five_prime_UTR	11704682	11704755	.	+	.	Parent=Os07t0298400-01
Chr07	irgsp1_rep	CDS	11704756	11704992	.	+	0	Parent=Os07t0298400-01
Chr07	irgsp1_rep	three_prime_UTR	11704993	11705223	.	+	.	Parent=Os07t0298400-01
Chr07	irgsp1_rep	mRNA	11722899	11727593	.	+	.	ID=Os07t0298700-01;Name=Os07t0298700-01;Locus_id=Os07g0298700;Note=Similar to OSIGBa0124C14.5 protein.;Transcript_evidence=AK106927 (DDBJ%2C Best hit);ORF_evidence=Q01N26 (UniProt);NIAS_FLcDNA=002-119-B11;TENOR=Os07t0298700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	11722899	11722986	.	+	.	Parent=Os07t0298700-01
Chr07	irgsp1_rep	CDS	11722987	11723012	.	+	0	Parent=Os07t0298700-01
Chr07	irgsp1_rep	CDS	11723235	11723319	.	+	1	Parent=Os07t0298700-01
Chr07	irgsp1_rep	CDS	11724196	11724250	.	+	0	Parent=Os07t0298700-01
Chr07	irgsp1_rep	CDS	11726137	11726543	.	+	2	Parent=Os07t0298700-01
Chr07	irgsp1_rep	three_prime_UTR	11726544	11727593	.	+	.	Parent=Os07t0298700-01
Chr07	irgsp1_rep	mRNA	11738725	11741008	.	-	.	ID=Os07t0298900-01;Name=Os07t0298900-01;Locus_id=Os07g0298900;Oryzabase Gene Symbol Synonym(s)=OsEnS-104%2C OsHMP35%2C HMP35;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 104%2C Heavy metal-associated protein 35;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK064565 (DDBJ%2C Best hit);ORF_evidence=B9F9Y9 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);NIAS_FLcDNA=002-112-D03;Oryzabase=18406;Expression=AK064565;TENOR=Os07t0298900-01;KEGG=Os07t0298900-01
Chr07	irgsp1_rep	five_prime_UTR	11740963	11741008	.	-	.	Parent=Os07t0298900-01
Chr07	irgsp1_rep	CDS	11740749	11740962	.	-	0	Parent=Os07t0298900-01
Chr07	irgsp1_rep	CDS	11740373	11740620	.	-	2	Parent=Os07t0298900-01
Chr07	irgsp1_rep	CDS	11739662	11739743	.	-	0	Parent=Os07t0298900-01
Chr07	irgsp1_rep	CDS	11738801	11739513	.	-	2	Parent=Os07t0298900-01
Chr07	irgsp1_rep	three_prime_UTR	11738725	11738800	.	-	.	Parent=Os07t0298900-01
Chr07	irgsp1_rep	mRNA	11780192	11786232	.	+	.	ID=Os07t0299600-01;Name=Os07t0299600-01;Locus_id=Os07g0299600;Note=Hypothetical conserved gene.;Transcript_evidence=AK243170 (DDBJ%2C Best hit);ORF_evidence=NP_001175150.1 (RefSeq);NIAS_FLcDNA=J100035I16;TENOR=Os07t0299600-01;KEGG=Os07t0299600-01
Chr07	irgsp1_rep	CDS	11780192	11780287	.	+	0	Parent=Os07t0299600-01
Chr07	irgsp1_rep	CDS	11785612	11785769	.	+	0	Parent=Os07t0299600-01
Chr07	irgsp1_rep	CDS	11785864	11785960	.	+	1	Parent=Os07t0299600-01
Chr07	irgsp1_rep	three_prime_UTR	11785961	11786232	.	+	.	Parent=Os07t0299600-01
Chr07	irgsp1_rep	mRNA	11783879	11784744	.	+	.	ID=Os07t0299701-00;Name=Os07t0299701-00;Locus_id=Os07g0299701;Note=Non-protein coding transcript.;Transcript_evidence=CT836126 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os07t0299701-00
Chr07	irgsp1_rep	exon	11783879	11784744	.	+	.	Parent=Os07t0299701-00
Chr07	irgsp1_rep	mRNA	11788919	11792494	.	-	.	ID=Os07t0299800-01;Name=Os07t0299800-01;Locus_id=Os07g0299800;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK287735 (DDBJ%2C Best hit);ORF_evidence=NP_001059421.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J065141O09;TENOR=Os07t0299800-01;KEGG=Os07t0299800-01
Chr07	irgsp1_rep	five_prime_UTR	11792405	11792494	.	-	.	Parent=Os07t0299800-01
Chr07	irgsp1_rep	CDS	11791427	11792404	.	-	0	Parent=Os07t0299800-01
Chr07	irgsp1_rep	CDS	11789208	11790251	.	-	0	Parent=Os07t0299800-01
Chr07	irgsp1_rep	three_prime_UTR	11788919	11789207	.	-	.	Parent=Os07t0299800-01
Chr07	irgsp1_rep	mRNA	11841906	11849150	.	-	.	ID=Os07t0300100-01;Name=Os07t0300100-01;Locus_id=Os07g0300100;Note=Hypothetical gene.;Transcript_evidence=AK288316 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090021E15;TENOR=Os07t0300100-01;KEGG=Os07t0300100-01
Chr07	irgsp1_rep	five_prime_UTR	11844490	11849150	.	-	.	Parent=Os07t0300100-01
Chr07	irgsp1_rep	CDS	11844049	11844489	.	-	0	Parent=Os07t0300100-01
Chr07	irgsp1_rep	three_prime_UTR	11841906	11844048	.	-	.	Parent=Os07t0300100-01
Chr07	irgsp1_rep	mRNA	11845814	11849019	.	+	.	ID=Os07t0300200-01;Name=Os07t0300200-01;Locus_id=Os07g0300200;Oryzabase Gene Symbol Synonym(s)=OsPILS5%2C PILS5;Oryzabase Gene Name Synonym(s)=PIN likes 5;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK120733 (DDBJ%2C Best hit);ORF_evidence=B8AKZ5 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J023003D10;Oryzabase=19847;Expression=AK120733;TENOR=Os07t0300200-01;KEGG=Os07t0300200-01
Chr07	irgsp1_rep	five_prime_UTR	11845814	11845861	.	+	.	Parent=Os07t0300200-01
Chr07	irgsp1_rep	CDS	11845862	11848903	.	+	0	Parent=Os07t0300200-01
Chr07	irgsp1_rep	three_prime_UTR	11848904	11849019	.	+	.	Parent=Os07t0300200-01
Chr07	irgsp1_rep	mRNA	11865550	11874237	.	-	.	ID=Os07t0300900-01;Name=Os07t0300900-01;Locus_id=Os07g0300900;Note=Similar to Aspartokinase.;Transcript_evidence=AK102162 (DDBJ%2C Best hit);ORF_evidence=B4FA80 (UniProt);GO=Biological Process: cellular amino acid biosynthetic process (GO:0008652),Molecular Function: aspartate kinase activity (GO:0004072);InterPro=Aspartate/glutamate/uridylate kinase (IPR001048),Aspartate kinase domain (IPR001341),Aspartate kinase%2C conserved site (IPR018042);NIAS_FLcDNA=J033086G22;Expression=AK102162;TENOR=Os07t0300900-01;KEGG=Os07t0300900-01 (EC:2.7.2.4)
Chr07	irgsp1_rep	five_prime_UTR	11874185	11874237	.	-	.	Parent=Os07t0300900-01
Chr07	irgsp1_rep	CDS	11873771	11874184	.	-	0	Parent=Os07t0300900-01
Chr07	irgsp1_rep	CDS	11873563	11873645	.	-	0	Parent=Os07t0300900-01
Chr07	irgsp1_rep	CDS	11873433	11873473	.	-	1	Parent=Os07t0300900-01
Chr07	irgsp1_rep	CDS	11868675	11868829	.	-	2	Parent=Os07t0300900-01
Chr07	irgsp1_rep	CDS	11868188	11868337	.	-	0	Parent=Os07t0300900-01
Chr07	irgsp1_rep	CDS	11867997	11868092	.	-	0	Parent=Os07t0300900-01
Chr07	irgsp1_rep	CDS	11867517	11867633	.	-	0	Parent=Os07t0300900-01
Chr07	irgsp1_rep	CDS	11867195	11867314	.	-	0	Parent=Os07t0300900-01
Chr07	irgsp1_rep	CDS	11867021	11867113	.	-	0	Parent=Os07t0300900-01
Chr07	irgsp1_rep	CDS	11866823	11866940	.	-	0	Parent=Os07t0300900-01
Chr07	irgsp1_rep	CDS	11866264	11866379	.	-	2	Parent=Os07t0300900-01
Chr07	irgsp1_rep	CDS	11866005	11866067	.	-	0	Parent=Os07t0300900-01
Chr07	irgsp1_rep	CDS	11865756	11865911	.	-	0	Parent=Os07t0300900-01
Chr07	irgsp1_rep	three_prime_UTR	11865550	11865755	.	-	.	Parent=Os07t0300900-01
Chr07	irgsp1_rep	mRNA	11865542	11874233	.	-	.	ID=Os07t0300900-02;Name=Os07t0300900-02;Locus_id=Os07g0300900;Note=Similar to Lysine-sensitive aspartate kinase.;Transcript_evidence=AK061941 (DDBJ%2C Best hit);ORF_evidence=B4FA80 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: cellular amino acid biosynthetic process (GO:0008652),Molecular Function: aspartate kinase activity (GO:0004072),Molecular Function: amino acid binding (GO:0016597);InterPro=Aspartate/glutamate/uridylate kinase (IPR001048),Aspartate kinase domain (IPR001341),Amino acid-binding ACT (IPR002912),Aspartate kinase%2C conserved site (IPR018042);NIAS_FLcDNA=001-042-D10;Expression=AK061941;TENOR=Os07t0300900-02;KEGG=Os07t0300900-02 (EC:2.7.2.4)
Chr07	irgsp1_rep	five_prime_UTR	11874185	11874233	.	-	.	Parent=Os07t0300900-02
Chr07	irgsp1_rep	CDS	11873771	11874184	.	-	0	Parent=Os07t0300900-02
Chr07	irgsp1_rep	CDS	11873563	11873645	.	-	0	Parent=Os07t0300900-02
Chr07	irgsp1_rep	CDS	11873433	11873473	.	-	1	Parent=Os07t0300900-02
Chr07	irgsp1_rep	CDS	11868675	11868829	.	-	2	Parent=Os07t0300900-02
Chr07	irgsp1_rep	CDS	11868188	11868337	.	-	0	Parent=Os07t0300900-02
Chr07	irgsp1_rep	CDS	11867997	11868092	.	-	0	Parent=Os07t0300900-02
Chr07	irgsp1_rep	CDS	11867517	11867633	.	-	0	Parent=Os07t0300900-02
Chr07	irgsp1_rep	CDS	11867195	11867314	.	-	0	Parent=Os07t0300900-02
Chr07	irgsp1_rep	CDS	11867021	11867113	.	-	0	Parent=Os07t0300900-02
Chr07	irgsp1_rep	CDS	11866818	11866940	.	-	0	Parent=Os07t0300900-02
Chr07	irgsp1_rep	CDS	11866264	11866380	.	-	0	Parent=Os07t0300900-02
Chr07	irgsp1_rep	CDS	11866005	11866067	.	-	0	Parent=Os07t0300900-02
Chr07	irgsp1_rep	CDS	11865756	11865911	.	-	0	Parent=Os07t0300900-02
Chr07	irgsp1_rep	three_prime_UTR	11865542	11865755	.	-	.	Parent=Os07t0300900-02
Chr07	irgsp1_rep	mRNA	11867242	11868341	.	+	.	ID=Os07t0301050-00;Name=Os07t0301050-00;Locus_id=Os07g0301050;Note=Non-protein coding transcript.;Transcript_evidence=BT068036 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0301050-00
Chr07	irgsp1_rep	exon	11867242	11867327	.	+	.	Parent=Os07t0301050-00
Chr07	irgsp1_rep	exon	11867533	11867630	.	+	.	Parent=Os07t0301050-00
Chr07	irgsp1_rep	exon	11868023	11868098	.	+	.	Parent=Os07t0301050-00
Chr07	irgsp1_rep	exon	11868197	11868341	.	+	.	Parent=Os07t0301050-00
Chr07	irgsp1_rep	mRNA	11887224	11894422	.	-	.	ID=Os07t0301200-01;Name=Os07t0301200-01;Locus_id=Os07g0301200;Oryzabase Gene Symbol Synonym(s)=OsRH5;Oryzabase Gene Name Synonym(s)=RNA helicase 5;Note=Similar to RNA helicase (Fragment).;Transcript_evidence=AK073463 (DDBJ%2C Best hit);ORF_evidence=C6G238 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=RNA helicase%2C ATP-dependent%2C DEAD-box%2C conserved site (IPR000629),Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=J033041I11;Oryzabase=16051;Expression=AK073463;TENOR=Os07t0301200-01;KEGG=Os07t0301200-01
Chr07	irgsp1_rep	five_prime_UTR	11894274	11894422	.	-	.	Parent=Os07t0301200-01
Chr07	irgsp1_rep	CDS	11893853	11894273	.	-	0	Parent=Os07t0301200-01
Chr07	irgsp1_rep	CDS	11893613	11893737	.	-	2	Parent=Os07t0301200-01
Chr07	irgsp1_rep	CDS	11892896	11893003	.	-	0	Parent=Os07t0301200-01
Chr07	irgsp1_rep	CDS	11892520	11892600	.	-	0	Parent=Os07t0301200-01
Chr07	irgsp1_rep	CDS	11890529	11890607	.	-	0	Parent=Os07t0301200-01
Chr07	irgsp1_rep	CDS	11889971	11890056	.	-	2	Parent=Os07t0301200-01
Chr07	irgsp1_rep	CDS	11889755	11889879	.	-	0	Parent=Os07t0301200-01
Chr07	irgsp1_rep	CDS	11889157	11889225	.	-	1	Parent=Os07t0301200-01
Chr07	irgsp1_rep	CDS	11888977	11889070	.	-	1	Parent=Os07t0301200-01
Chr07	irgsp1_rep	CDS	11888063	11888227	.	-	0	Parent=Os07t0301200-01
Chr07	irgsp1_rep	CDS	11887882	11887974	.	-	0	Parent=Os07t0301200-01
Chr07	irgsp1_rep	CDS	11887478	11887570	.	-	0	Parent=Os07t0301200-01
Chr07	irgsp1_rep	three_prime_UTR	11887224	11887477	.	-	.	Parent=Os07t0301200-01
Chr07	irgsp1_rep	mRNA	11887215	11891783	.	-	.	ID=Os07t0301200-02;Name=Os07t0301200-02;Locus_id=Os07g0301200;Oryzabase Gene Symbol Synonym(s)=OsRH5;Oryzabase Gene Name Synonym(s)=RNA helicase 5;Note=Similar to STRS1 (STRESS RESPONSE SUPPRESSOR 1)%3B ATP-dependent helicase.;Transcript_evidence=AK102570 (DDBJ%2C Best hit);ORF_evidence=C6G238 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=RNA helicase%2C ATP-dependent%2C DEAD-box%2C conserved site (IPR000629),Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J033097L21;Oryzabase=16051;Expression=AK102570;TENOR=Os07t0301200-02;KEGG=Os07t0301200-02 (EC:3.6.4.13)
Chr07	irgsp1_rep	five_prime_UTR	11890617	11891783	.	-	.	Parent=Os07t0301200-02
Chr07	irgsp1_rep	CDS	11890529	11890616	.	-	0	Parent=Os07t0301200-02
Chr07	irgsp1_rep	CDS	11889971	11890056	.	-	2	Parent=Os07t0301200-02
Chr07	irgsp1_rep	CDS	11889755	11889879	.	-	0	Parent=Os07t0301200-02
Chr07	irgsp1_rep	CDS	11889157	11889225	.	-	1	Parent=Os07t0301200-02
Chr07	irgsp1_rep	CDS	11888977	11889070	.	-	1	Parent=Os07t0301200-02
Chr07	irgsp1_rep	CDS	11888063	11888227	.	-	0	Parent=Os07t0301200-02
Chr07	irgsp1_rep	CDS	11887882	11887974	.	-	0	Parent=Os07t0301200-02
Chr07	irgsp1_rep	CDS	11887478	11887570	.	-	0	Parent=Os07t0301200-02
Chr07	irgsp1_rep	three_prime_UTR	11887215	11887477	.	-	.	Parent=Os07t0301200-02
Chr07	irgsp1_rep	mRNA	11909796	11913642	.	-	.	ID=Os07t0301500-00;Name=Os07t0301500-00;Locus_id=Os07g0301500;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK367740 (DDBJ);ORF_evidence=Q6YS27 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os07t0301500-00
Chr07	irgsp1_rep	five_prime_UTR	11913596	11913642	.	-	.	Parent=Os07t0301500-00
Chr07	irgsp1_rep	CDS	11913511	11913595	.	-	0	Parent=Os07t0301500-00
Chr07	irgsp1_rep	CDS	11913269	11913381	.	-	2	Parent=Os07t0301500-00
Chr07	irgsp1_rep	CDS	11912712	11912925	.	-	0	Parent=Os07t0301500-00
Chr07	irgsp1_rep	CDS	11912265	11912484	.	-	2	Parent=Os07t0301500-00
Chr07	irgsp1_rep	CDS	11911934	11912066	.	-	1	Parent=Os07t0301500-00
Chr07	irgsp1_rep	CDS	11909837	11910121	.	-	0	Parent=Os07t0301500-00
Chr07	irgsp1_rep	three_prime_UTR	11909796	11909836	.	-	.	Parent=Os07t0301500-00
Chr07	irgsp1_rep	mRNA	11948206	11949101	.	-	.	ID=Os07t0302100-00;Name=Os07t0302100-00;Locus_id=Os07g0302100;Note=S-locus glycoprotein domain containing protein.;Transcript_evidence=BT066529 (DDBJ);ORF_evidence=XP_002461866.1 (RefSeq);GO=Biological Process: recognition of pollen (GO:0048544);InterPro=S-locus glycoprotein (IPR000858),Apple-like (IPR003609),PAN-2 domain (IPR013227);TENOR=Os07t0302100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	11948208	11949101	.	-	0	Parent=Os07t0302100-00
Chr07	irgsp1_rep	three_prime_UTR	11948206	11948207	.	-	.	Parent=Os07t0302100-00
Chr07	irgsp1_rep	mRNA	12282819	12284449	.	+	.	ID=Os07t0403800-00;Name=Os07t0403800-00;Locus_id=Os07g0403800;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Similar to ligA.;Transcript_evidence=AK362653 (DDBJ);ORF_evidence=NP_001147815.1 (RefSeq);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109);Oryzabase=23674;TENOR=Os07t0403800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	12282819	12283181	.	+	0	Parent=Os07t0403800-00
Chr07	irgsp1_rep	three_prime_UTR	12283182	12283325	.	+	.	Parent=Os07t0403800-00
Chr07	irgsp1_rep	three_prime_UTR	12284118	12284449	.	+	.	Parent=Os07t0403800-00
Chr07	irgsp1_rep	mRNA	12313548	12325679	.	-	.	ID=Os07t0404300-01;Name=Os07t0404300-01;Locus_id=Os07g0404300;Note=Zinc finger%2C RanBP2-type domain containing protein.;Transcript_evidence=AK101785 (DDBJ%2C Best hit);ORF_evidence=B8B597 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RanBP2-type (IPR001876);NIAS_FLcDNA=J033065D06;Expression=AK101785;TENOR=Os07t0404300-01;KEGG=Os07t0404300-01
Chr07	irgsp1_rep	five_prime_UTR	12325406	12325679	.	-	.	Parent=Os07t0404300-01
Chr07	irgsp1_rep	CDS	12325143	12325405	.	-	0	Parent=Os07t0404300-01
Chr07	irgsp1_rep	CDS	12319652	12319769	.	-	1	Parent=Os07t0404300-01
Chr07	irgsp1_rep	CDS	12316539	12316891	.	-	0	Parent=Os07t0404300-01
Chr07	irgsp1_rep	CDS	12316356	12316454	.	-	1	Parent=Os07t0404300-01
Chr07	irgsp1_rep	CDS	12313901	12315011	.	-	1	Parent=Os07t0404300-01
Chr07	irgsp1_rep	three_prime_UTR	12313548	12313900	.	-	.	Parent=Os07t0404300-01
Chr07	irgsp1_rep	mRNA	12424084	12440298	.	-	.	ID=Os07t0404900-00;Name=Os07t0404900-00;Locus_id=Os07g0404900;Note=Hypothetical protein.;Transcript_evidence=tplb0056c01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0404900-00
Chr07	irgsp1_rep	five_prime_UTR	12439928	12440298	.	-	.	Parent=Os07t0404900-00
Chr07	irgsp1_rep	five_prime_UTR	12438916	12439768	.	-	.	Parent=Os07t0404900-00
Chr07	irgsp1_rep	five_prime_UTR	12438575	12438711	.	-	.	Parent=Os07t0404900-00
Chr07	irgsp1_rep	five_prime_UTR	12438428	12438494	.	-	.	Parent=Os07t0404900-00
Chr07	irgsp1_rep	five_prime_UTR	12432611	12432701	.	-	.	Parent=Os07t0404900-00
Chr07	irgsp1_rep	five_prime_UTR	12431583	12431691	.	-	.	Parent=Os07t0404900-00
Chr07	irgsp1_rep	five_prime_UTR	12431330	12431469	.	-	.	Parent=Os07t0404900-00
Chr07	irgsp1_rep	five_prime_UTR	12431074	12431149	.	-	.	Parent=Os07t0404900-00
Chr07	irgsp1_rep	five_prime_UTR	12430745	12430924	.	-	.	Parent=Os07t0404900-00
Chr07	irgsp1_rep	five_prime_UTR	12428967	12429076	.	-	.	Parent=Os07t0404900-00
Chr07	irgsp1_rep	five_prime_UTR	12426273	12426716	.	-	.	Parent=Os07t0404900-00
Chr07	irgsp1_rep	CDS	12426174	12426272	.	-	0	Parent=Os07t0404900-00
Chr07	irgsp1_rep	CDS	12424084	12424282	.	-	0	Parent=Os07t0404900-00
Chr07	irgsp1_rep	mRNA	12424105	12440476	.	+	.	ID=Os07t0405100-01;Name=Os07t0405100-01;Locus_id=Os07g0405100;Oryzabase Gene Symbol Synonym(s)=OsWD40-141;Note=Similar to F-box-like/WD-repeat protein ebi.;Transcript_evidence=AK111882 (DDBJ%2C Best hit);ORF_evidence=XP_002447490.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),LisH dimerisation motif (IPR006594),WD40 repeat-like-containing domain (IPR011046),LisH dimerisation motif%2C subgroup (IPR013720),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J033048J08;Oryzabase=10822;Expression=AK111882;TENOR=Os07t0405100-01;KEGG=Os07t0405100-01
Chr07	irgsp1_rep	five_prime_UTR	12424105	12424202	.	+	.	Parent=Os07t0405100-01
Chr07	irgsp1_rep	CDS	12424203	12424263	.	+	0	Parent=Os07t0405100-01
Chr07	irgsp1_rep	CDS	12426152	12426297	.	+	2	Parent=Os07t0405100-01
Chr07	irgsp1_rep	CDS	12426372	12426708	.	+	0	Parent=Os07t0405100-01
Chr07	irgsp1_rep	CDS	12428969	12429051	.	+	2	Parent=Os07t0405100-01
Chr07	irgsp1_rep	CDS	12429151	12429197	.	+	0	Parent=Os07t0405100-01
Chr07	irgsp1_rep	CDS	12430774	12430924	.	+	1	Parent=Os07t0405100-01
Chr07	irgsp1_rep	CDS	12431074	12431137	.	+	0	Parent=Os07t0405100-01
Chr07	irgsp1_rep	CDS	12431314	12431472	.	+	2	Parent=Os07t0405100-01
Chr07	irgsp1_rep	CDS	12431586	12431707	.	+	2	Parent=Os07t0405100-01
Chr07	irgsp1_rep	CDS	12432629	12432703	.	+	0	Parent=Os07t0405100-01
Chr07	irgsp1_rep	CDS	12438430	12438483	.	+	0	Parent=Os07t0405100-01
Chr07	irgsp1_rep	CDS	12438564	12438637	.	+	0	Parent=Os07t0405100-01
Chr07	irgsp1_rep	CDS	12439709	12439783	.	+	1	Parent=Os07t0405100-01
Chr07	irgsp1_rep	CDS	12439944	12440163	.	+	1	Parent=Os07t0405100-01
Chr07	irgsp1_rep	three_prime_UTR	12440164	12440476	.	+	.	Parent=Os07t0405100-01
Chr07	irgsp1_rep	mRNA	12445633	12449912	.	+	.	ID=Os07t0405700-01;Name=Os07t0405700-01;Locus_id=Os07g0405700;Note=Conserved hypothetical protein.;Transcript_evidence=AK241843 (DDBJ%2C Best hit);ORF_evidence=NP_001172356.1 (RefSeq);NIAS_FLcDNA=J065214E08;TENOR=Os07t0405700-01
Chr07	irgsp1_rep	five_prime_UTR	12445633	12445633	.	+	.	Parent=Os07t0405700-01
Chr07	irgsp1_rep	CDS	12445634	12446081	.	+	0	Parent=Os07t0405700-01
Chr07	irgsp1_rep	CDS	12446159	12446175	.	+	2	Parent=Os07t0405700-01
Chr07	irgsp1_rep	three_prime_UTR	12446176	12446271	.	+	.	Parent=Os07t0405700-01
Chr07	irgsp1_rep	three_prime_UTR	12448133	12448186	.	+	.	Parent=Os07t0405700-01
Chr07	irgsp1_rep	three_prime_UTR	12449726	12449912	.	+	.	Parent=Os07t0405700-01
Chr07	irgsp1_rep	mRNA	12545888	12550057	.	-	.	ID=Os07t0406300-01;Name=Os07t0406300-01;Locus_id=Os07g0406300;Oryzabase Gene Symbol Synonym(s)=OsG6PDH3%2C OsG6PDH2;Oryzabase Gene Name Synonym(s)=d-glucose 6-phosphate dehydrogenase 3%2C Glucose-6-phosphate dehydrogenase 2%2C plastidic G6PDH;Note=Similar to Glucose-6-phosphate 1-dehydrogenase.;Transcript_evidence=AK099891 (DDBJ%2C Best hit);ORF_evidence=Q7XAV7 (UniProt);GO=Biological Process: glucose metabolic process (GO:0006006),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: glucose-6-phosphate dehydrogenase activity (GO:0004345),Molecular Function: NADP binding (GO:0050661);InterPro=Glucose-6-phosphate dehydrogenase (IPR001282),NAD(P)-binding domain (IPR016040),Glucose-6-phosphate dehydrogenase%2C active site (IPR019796),Glucose-6-phosphate dehydrogenase%2C NAD-binding (IPR022674),Glucose-6-phosphate dehydrogenase%2C C-terminal (IPR022675);NIAS_FLcDNA=J013113A19;Oryzabase=14996;TENOR=Os07t0406300-01
Chr07	irgsp1_rep	five_prime_UTR	12549918	12550057	.	-	.	Parent=Os07t0406300-01
Chr07	irgsp1_rep	CDS	12549761	12549917	.	-	0	Parent=Os07t0406300-01
Chr07	irgsp1_rep	CDS	12548102	12548337	.	-	2	Parent=Os07t0406300-01
Chr07	irgsp1_rep	CDS	12547925	12548019	.	-	0	Parent=Os07t0406300-01
Chr07	irgsp1_rep	CDS	12547699	12547813	.	-	1	Parent=Os07t0406300-01
Chr07	irgsp1_rep	CDS	12546688	12546893	.	-	0	Parent=Os07t0406300-01
Chr07	irgsp1_rep	CDS	12546402	12546551	.	-	1	Parent=Os07t0406300-01
Chr07	irgsp1_rep	CDS	12546203	12546323	.	-	1	Parent=Os07t0406300-01
Chr07	irgsp1_rep	CDS	12545888	12545982	.	-	0	Parent=Os07t0406300-01
Chr07	irgsp1_rep	mRNA	12544349	12550054	.	-	.	ID=Os07t0406300-02;Name=Os07t0406300-02;Locus_id=Os07g0406300;Oryzabase Gene Symbol Synonym(s)=OsG6PDH3%2C OsG6PDH2;Oryzabase Gene Name Synonym(s)=d-glucose 6-phosphate dehydrogenase 3%2C Glucose-6-phosphate dehydrogenase 2%2C plastidic G6PDH;Note=Similar to Glucose-6-phosphate 1-dehydrogenase precursor (EC 1.1.1.49).;Transcript_evidence=AK064867 (DDBJ%2C Best hit);ORF_evidence=Q7XAV7 (UniProt);GO=Biological Process: glucose metabolic process (GO:0006006),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: glucose-6-phosphate dehydrogenase activity (GO:0004345),Molecular Function: NADP binding (GO:0050661);InterPro=Glucose-6-phosphate dehydrogenase (IPR001282),NAD(P)-binding domain (IPR016040),Glucose-6-phosphate dehydrogenase%2C active site (IPR019796),Glucose-6-phosphate dehydrogenase%2C NAD-binding (IPR022674),Glucose-6-phosphate dehydrogenase%2C C-terminal (IPR022675);NIAS_FLcDNA=J013000I19;Oryzabase=14996;Expression=AK064867;TENOR=Os07t0406300-02;KEGG=Os07t0406300-02 (EC:1.1.1.49)
Chr07	irgsp1_rep	five_prime_UTR	12549918	12550054	.	-	.	Parent=Os07t0406300-02
Chr07	irgsp1_rep	CDS	12549761	12549917	.	-	0	Parent=Os07t0406300-02
Chr07	irgsp1_rep	CDS	12548102	12548337	.	-	2	Parent=Os07t0406300-02
Chr07	irgsp1_rep	CDS	12547925	12548019	.	-	0	Parent=Os07t0406300-02
Chr07	irgsp1_rep	CDS	12547699	12547813	.	-	1	Parent=Os07t0406300-02
Chr07	irgsp1_rep	CDS	12546688	12546893	.	-	0	Parent=Os07t0406300-02
Chr07	irgsp1_rep	CDS	12546402	12546551	.	-	1	Parent=Os07t0406300-02
Chr07	irgsp1_rep	CDS	12546203	12546323	.	-	1	Parent=Os07t0406300-02
Chr07	irgsp1_rep	CDS	12545753	12545982	.	-	0	Parent=Os07t0406300-02
Chr07	irgsp1_rep	CDS	12545154	12545354	.	-	1	Parent=Os07t0406300-02
Chr07	irgsp1_rep	CDS	12544519	12544774	.	-	1	Parent=Os07t0406300-02
Chr07	irgsp1_rep	three_prime_UTR	12544349	12544518	.	-	.	Parent=Os07t0406300-02
Chr07	irgsp1_rep	mRNA	12544544	12550017	.	+	.	ID=Os07t0406350-00;Name=Os07t0406350-00;Locus_id=Os07g0406350;Note=Hypothetical protein.;Transcript_evidence=tplb0030j08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0406350-00
Chr07	irgsp1_rep	five_prime_UTR	12544544	12544785	.	+	.	Parent=Os07t0406350-00
Chr07	irgsp1_rep	five_prime_UTR	12545166	12545357	.	+	.	Parent=Os07t0406350-00
Chr07	irgsp1_rep	five_prime_UTR	12545756	12545979	.	+	.	Parent=Os07t0406350-00
Chr07	irgsp1_rep	five_prime_UTR	12546200	12546290	.	+	.	Parent=Os07t0406350-00
Chr07	irgsp1_rep	CDS	12546291	12546320	.	+	0	Parent=Os07t0406350-00
Chr07	irgsp1_rep	CDS	12546399	12546541	.	+	0	Parent=Os07t0406350-00
Chr07	irgsp1_rep	CDS	12546678	12546867	.	+	1	Parent=Os07t0406350-00
Chr07	irgsp1_rep	three_prime_UTR	12546868	12546904	.	+	.	Parent=Os07t0406350-00
Chr07	irgsp1_rep	three_prime_UTR	12547714	12547806	.	+	.	Parent=Os07t0406350-00
Chr07	irgsp1_rep	three_prime_UTR	12547917	12548011	.	+	.	Parent=Os07t0406350-00
Chr07	irgsp1_rep	three_prime_UTR	12548087	12548347	.	+	.	Parent=Os07t0406350-00
Chr07	irgsp1_rep	three_prime_UTR	12549770	12550017	.	+	.	Parent=Os07t0406350-00
Chr07	irgsp1_rep	mRNA	12565857	12570189	.	+	.	ID=Os07t0406600-01;Name=Os07t0406600-01;Locus_id=Os07g0406600;Note=DDHD domain containing protein.;Transcript_evidence=AK242970 (DDBJ%2C Best hit);ORF_evidence=NP_001060822.1 (RefSeq);GO=Molecular Function: metal ion binding (GO:0046872);InterPro=DDHD (IPR004177);NIAS_FLcDNA=J090091H08;Oryzabase=23054;TENOR=Os07t0406600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	12565857	12566066	.	+	.	Parent=Os07t0406600-01
Chr07	irgsp1_rep	five_prime_UTR	12566200	12566458	.	+	.	Parent=Os07t0406600-01
Chr07	irgsp1_rep	five_prime_UTR	12566543	12567212	.	+	.	Parent=Os07t0406600-01
Chr07	irgsp1_rep	five_prime_UTR	12567409	12567533	.	+	.	Parent=Os07t0406600-01
Chr07	irgsp1_rep	five_prime_UTR	12567740	12567898	.	+	.	Parent=Os07t0406600-01
Chr07	irgsp1_rep	five_prime_UTR	12568006	12568024	.	+	.	Parent=Os07t0406600-01
Chr07	irgsp1_rep	CDS	12568025	12568076	.	+	0	Parent=Os07t0406600-01
Chr07	irgsp1_rep	CDS	12568359	12568459	.	+	2	Parent=Os07t0406600-01
Chr07	irgsp1_rep	CDS	12569052	12569098	.	+	0	Parent=Os07t0406600-01
Chr07	irgsp1_rep	CDS	12569173	12569305	.	+	1	Parent=Os07t0406600-01
Chr07	irgsp1_rep	three_prime_UTR	12569306	12569469	.	+	.	Parent=Os07t0406600-01
Chr07	irgsp1_rep	three_prime_UTR	12569655	12570189	.	+	.	Parent=Os07t0406600-01
Chr07	irgsp1_rep	mRNA	12574580	12579665	.	-	.	ID=Os07t0406800-01;Name=Os07t0406800-01;Locus_id=Os07g0406800;Note=DNA primase%2C large subunit%2C eukaryotic domain containing protein.;Transcript_evidence=AK101812 (DDBJ%2C Best hit);ORF_evidence=NP_564893.2 (RefSeq);GO=Biological Process: DNA replication%2C synthesis of RNA primer (GO:0006269),Molecular Function: DNA primase activity (GO:0003896),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=DNA primase%2C large subunit%2C eukaryotic/archaeal (IPR007238),DNA primase%2C large subunit%2C eukaryotic (IPR016558);NIAS_FLcDNA=J033066O22;Expression=AK101812;TENOR=Os07t0406800-01;KEGG=Os07t0406800-01 (EC:2.7.7.-)
Chr07	irgsp1_rep	five_prime_UTR	12579576	12579665	.	-	.	Parent=Os07t0406800-01
Chr07	irgsp1_rep	CDS	12579419	12579575	.	-	0	Parent=Os07t0406800-01
Chr07	irgsp1_rep	CDS	12579241	12579302	.	-	2	Parent=Os07t0406800-01
Chr07	irgsp1_rep	CDS	12578923	12579026	.	-	0	Parent=Os07t0406800-01
Chr07	irgsp1_rep	CDS	12578709	12578790	.	-	1	Parent=Os07t0406800-01
Chr07	irgsp1_rep	CDS	12578572	12578631	.	-	0	Parent=Os07t0406800-01
Chr07	irgsp1_rep	CDS	12578428	12578482	.	-	0	Parent=Os07t0406800-01
Chr07	irgsp1_rep	CDS	12578289	12578308	.	-	2	Parent=Os07t0406800-01
Chr07	irgsp1_rep	CDS	12578101	12578184	.	-	0	Parent=Os07t0406800-01
Chr07	irgsp1_rep	CDS	12577947	12578011	.	-	0	Parent=Os07t0406800-01
Chr07	irgsp1_rep	CDS	12577644	12577692	.	-	1	Parent=Os07t0406800-01
Chr07	irgsp1_rep	CDS	12577514	12577561	.	-	0	Parent=Os07t0406800-01
Chr07	irgsp1_rep	CDS	12577303	12577392	.	-	0	Parent=Os07t0406800-01
Chr07	irgsp1_rep	CDS	12577168	12577227	.	-	0	Parent=Os07t0406800-01
Chr07	irgsp1_rep	CDS	12577010	12577069	.	-	0	Parent=Os07t0406800-01
Chr07	irgsp1_rep	CDS	12576674	12576748	.	-	0	Parent=Os07t0406800-01
Chr07	irgsp1_rep	CDS	12576512	12576597	.	-	0	Parent=Os07t0406800-01
Chr07	irgsp1_rep	CDS	12576188	12576281	.	-	1	Parent=Os07t0406800-01
Chr07	irgsp1_rep	CDS	12575997	12576104	.	-	0	Parent=Os07t0406800-01
Chr07	irgsp1_rep	CDS	12575874	12575906	.	-	0	Parent=Os07t0406800-01
Chr07	irgsp1_rep	three_prime_UTR	12575825	12575873	.	-	.	Parent=Os07t0406800-01
Chr07	irgsp1_rep	three_prime_UTR	12574580	12574989	.	-	.	Parent=Os07t0406800-01
Chr07	irgsp1_rep	mRNA	12575615	12579614	.	-	.	ID=Os07t0406800-02;Name=Os07t0406800-02;Locus_id=Os07g0406800;Note=Similar to predicted protein.;Transcript_evidence=AK064087 (DDBJ%2C Best hit);ORF_evidence=NP_564893.2 (RefSeq);GO=Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=DNA primase%2C large subunit%2C eukaryotic (IPR016558);NIAS_FLcDNA=002-100-C02;Expression=AK064087;TENOR=Os07t0406800-02;KEGG=Os07t0406800-02 (EC:2.7.7.-)
Chr07	irgsp1_rep	five_prime_UTR	12579576	12579614	.	-	.	Parent=Os07t0406800-02
Chr07	irgsp1_rep	CDS	12579419	12579575	.	-	0	Parent=Os07t0406800-02
Chr07	irgsp1_rep	CDS	12579241	12579302	.	-	2	Parent=Os07t0406800-02
Chr07	irgsp1_rep	CDS	12578965	12579026	.	-	0	Parent=Os07t0406800-02
Chr07	irgsp1_rep	CDS	12578106	12578124	.	-	1	Parent=Os07t0406800-02
Chr07	irgsp1_rep	three_prime_UTR	12578101	12578105	.	-	.	Parent=Os07t0406800-02
Chr07	irgsp1_rep	three_prime_UTR	12577947	12578011	.	-	.	Parent=Os07t0406800-02
Chr07	irgsp1_rep	three_prime_UTR	12577644	12577692	.	-	.	Parent=Os07t0406800-02
Chr07	irgsp1_rep	three_prime_UTR	12577514	12577561	.	-	.	Parent=Os07t0406800-02
Chr07	irgsp1_rep	three_prime_UTR	12577303	12577392	.	-	.	Parent=Os07t0406800-02
Chr07	irgsp1_rep	three_prime_UTR	12577168	12577227	.	-	.	Parent=Os07t0406800-02
Chr07	irgsp1_rep	three_prime_UTR	12577010	12577069	.	-	.	Parent=Os07t0406800-02
Chr07	irgsp1_rep	three_prime_UTR	12576674	12576748	.	-	.	Parent=Os07t0406800-02
Chr07	irgsp1_rep	three_prime_UTR	12576512	12576597	.	-	.	Parent=Os07t0406800-02
Chr07	irgsp1_rep	three_prime_UTR	12576188	12576281	.	-	.	Parent=Os07t0406800-02
Chr07	irgsp1_rep	three_prime_UTR	12575997	12576104	.	-	.	Parent=Os07t0406800-02
Chr07	irgsp1_rep	three_prime_UTR	12575615	12575906	.	-	.	Parent=Os07t0406800-02
Chr07	irgsp1_rep	mRNA	12622645	12623291	.	-	.	ID=Os07t0407300-00;Name=Os07t0407300-00;Locus_id=Os07g0407300;Note=Similar to nascent polypeptide-associated complex alpha subunit-like protein.;Transcript_evidence=EU956304 (DDBJ);ORF_evidence=NP_001147705.1 (RefSeq);InterPro=Nascent polypeptide-associated complex NAC (IPR002715);TENOR=Os07t0407300-00;KEGG=Os07t0407300-00
Chr07	irgsp1_rep	five_prime_UTR	12623223	12623291	.	-	.	Parent=Os07t0407300-00
Chr07	irgsp1_rep	CDS	12623036	12623222	.	-	0	Parent=Os07t0407300-00
Chr07	irgsp1_rep	CDS	12622645	12622826	.	-	2	Parent=Os07t0407300-00
Chr07	irgsp1_rep	mRNA	12625913	12629299	.	-	.	ID=Os07t0407350-01;Name=Os07t0407350-01;Locus_id=Os07g0407350;Note=Conserved hypothetical protein.;Transcript_evidence=AK241541 (DDBJ%2C Best hit);ORF_evidence=NP_001175155.1 (RefSeq);NIAS_FLcDNA=J065175J02;TENOR=Os07t0407350-01;KEGG=Os07t0407350-01
Chr07	irgsp1_rep	five_prime_UTR	12629067	12629299	.	-	.	Parent=Os07t0407350-01
Chr07	irgsp1_rep	CDS	12628748	12629066	.	-	0	Parent=Os07t0407350-01
Chr07	irgsp1_rep	CDS	12627540	12627571	.	-	2	Parent=Os07t0407350-01
Chr07	irgsp1_rep	three_prime_UTR	12627502	12627539	.	-	.	Parent=Os07t0407350-01
Chr07	irgsp1_rep	three_prime_UTR	12625913	12626154	.	-	.	Parent=Os07t0407350-01
Chr07	irgsp1_rep	mRNA	12652916	12656448	.	-	.	ID=Os07t0407700-01;Name=Os07t0407700-01;Locus_id=Os07g0407700;Note=Hypothetical conserved gene.;Transcript_evidence=AK070017 (DDBJ%2C Best hit);ORF_evidence=B9FWR8 (UniProt);NIAS_FLcDNA=J023039B11;Expression=AK070017;TENOR=Os07t0407700-01;KEGG=Os07t0407700-01
Chr07	irgsp1_rep	five_prime_UTR	12656312	12656448	.	-	.	Parent=Os07t0407700-01
Chr07	irgsp1_rep	CDS	12656157	12656311	.	-	0	Parent=Os07t0407700-01
Chr07	irgsp1_rep	CDS	12655985	12656048	.	-	1	Parent=Os07t0407700-01
Chr07	irgsp1_rep	CDS	12655070	12655126	.	-	0	Parent=Os07t0407700-01
Chr07	irgsp1_rep	three_prime_UTR	12654772	12655069	.	-	.	Parent=Os07t0407700-01
Chr07	irgsp1_rep	three_prime_UTR	12652916	12653217	.	-	.	Parent=Os07t0407700-01
Chr07	irgsp1_rep	mRNA	12652992	12656414	.	-	.	ID=Os07t0407700-02;Name=Os07t0407700-02;Locus_id=Os07g0407700;Note=Conserved hypothetical protein.;Transcript_evidence=AK061089 (DDBJ%2C Best hit);ORF_evidence=B9FWR8 (UniProt);NIAS_FLcDNA=006-206-G11;Expression=AK061089;TENOR=Os07t0407700-02;KEGG=Os07t0407700-02
Chr07	irgsp1_rep	five_prime_UTR	12656312	12656414	.	-	.	Parent=Os07t0407700-02
Chr07	irgsp1_rep	CDS	12656157	12656311	.	-	0	Parent=Os07t0407700-02
Chr07	irgsp1_rep	CDS	12655985	12656048	.	-	1	Parent=Os07t0407700-02
Chr07	irgsp1_rep	CDS	12655733	12655795	.	-	0	Parent=Os07t0407700-02
Chr07	irgsp1_rep	three_prime_UTR	12655709	12655732	.	-	.	Parent=Os07t0407700-02
Chr07	irgsp1_rep	three_prime_UTR	12654772	12655129	.	-	.	Parent=Os07t0407700-02
Chr07	irgsp1_rep	three_prime_UTR	12652992	12653217	.	-	.	Parent=Os07t0407700-02
Chr07	irgsp1_rep	mRNA	12652973	12656067	.	-	.	ID=Os07t0407700-03;Name=Os07t0407700-03;Locus_id=Os07g0407700;Note=Hypothetical conserved gene.;Transcript_evidence=AK100880 (DDBJ%2C Best hit);ORF_evidence=A3BIU9 (UniProt);NIAS_FLcDNA=J023127F23;Expression=AK100880;TENOR=Os07t0407700-03;KEGG=Os07t0407700-03
Chr07	irgsp1_rep	five_prime_UTR	12655709	12656067	.	-	.	Parent=Os07t0407700-03
Chr07	irgsp1_rep	five_prime_UTR	12654052	12655129	.	-	.	Parent=Os07t0407700-03
Chr07	irgsp1_rep	CDS	12653845	12654051	.	-	0	Parent=Os07t0407700-03
Chr07	irgsp1_rep	three_prime_UTR	12652973	12653844	.	-	.	Parent=Os07t0407700-03
Chr07	irgsp1_rep	mRNA	12653364	12655017	.	-	.	ID=Os07t0407700-04;Name=Os07t0407700-04;Locus_id=Os07g0407700;Note=Hypothetical conserved gene.;Transcript_evidence=AK059329 (DDBJ%2C Best hit);ORF_evidence=A3BIU9 (UniProt);NIAS_FLcDNA=001-026-A05;Expression=AK059329;TENOR=Os07t0407700-04;KEGG=Os07t0407700-04
Chr07	irgsp1_rep	five_prime_UTR	12654772	12655017	.	-	.	Parent=Os07t0407700-04
Chr07	irgsp1_rep	five_prime_UTR	12654052	12654354	.	-	.	Parent=Os07t0407700-04
Chr07	irgsp1_rep	CDS	12653845	12654051	.	-	0	Parent=Os07t0407700-04
Chr07	irgsp1_rep	three_prime_UTR	12653364	12653844	.	-	.	Parent=Os07t0407700-04
Chr07	irgsp1_rep	mRNA	12665274	12666368	.	+	.	ID=Os07t0407900-01;Name=Os07t0407900-01;Locus_id=Os07g0407900;Note=Protein of unknown function DUF679 family protein.;Transcript_evidence=AK108877 (DDBJ%2C Best hit);ORF_evidence=XP_002455931.1 (RefSeq);InterPro=Protein of unknown function DUF679 (IPR007770);NIAS_FLcDNA=002-152-D03;Expression=AK108877;TENOR=Os07t0407900-01;KEGG=Os07t0407900-01
Chr07	irgsp1_rep	five_prime_UTR	12665274	12665312	.	+	.	Parent=Os07t0407900-01
Chr07	irgsp1_rep	CDS	12665313	12666101	.	+	0	Parent=Os07t0407900-01
Chr07	irgsp1_rep	three_prime_UTR	12666102	12666368	.	+	.	Parent=Os07t0407900-01
Chr07	irgsp1_rep	mRNA	12676151	12684320	.	-	.	ID=Os07t0408100-01;Name=Os07t0408100-01;Locus_id=Os07g0408100;Oryzabase Gene Symbol Synonym(s)=OsWD40-142;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK111780 (DDBJ%2C Best hit);ORF_evidence=B9FWR9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J023085F17;Oryzabase=10823;Expression=AK111780;TENOR=Os07t0408100-01;KEGG=Os07t0408100-01
Chr07	irgsp1_rep	five_prime_UTR	12684250	12684320	.	-	.	Parent=Os07t0408100-01
Chr07	irgsp1_rep	CDS	12684040	12684249	.	-	0	Parent=Os07t0408100-01
Chr07	irgsp1_rep	CDS	12683835	12683948	.	-	0	Parent=Os07t0408100-01
Chr07	irgsp1_rep	CDS	12680256	12680383	.	-	0	Parent=Os07t0408100-01
Chr07	irgsp1_rep	CDS	12680045	12680183	.	-	1	Parent=Os07t0408100-01
Chr07	irgsp1_rep	CDS	12679730	12679929	.	-	0	Parent=Os07t0408100-01
Chr07	irgsp1_rep	CDS	12678844	12678971	.	-	1	Parent=Os07t0408100-01
Chr07	irgsp1_rep	CDS	12677073	12677266	.	-	2	Parent=Os07t0408100-01
Chr07	irgsp1_rep	CDS	12676817	12676972	.	-	0	Parent=Os07t0408100-01
Chr07	irgsp1_rep	three_prime_UTR	12676780	12676816	.	-	.	Parent=Os07t0408100-01
Chr07	irgsp1_rep	three_prime_UTR	12676151	12676515	.	-	.	Parent=Os07t0408100-01
Chr07	irgsp1_rep	mRNA	12679536	12684320	.	-	.	ID=Os07t0408100-02;Name=Os07t0408100-02;Locus_id=Os07g0408100;Oryzabase Gene Symbol Synonym(s)=OsWD40-142;Note=Similar to predicted protein.;Transcript_evidence=AK108466 (DDBJ%2C Best hit);ORF_evidence=Q7XAL8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=002-143-E01;Oryzabase=10823;Expression=AK108466;TENOR=Os07t0408100-02;KEGG=Os07t0408100-02
Chr07	irgsp1_rep	five_prime_UTR	12684250	12684320	.	-	.	Parent=Os07t0408100-02
Chr07	irgsp1_rep	CDS	12684040	12684249	.	-	0	Parent=Os07t0408100-02
Chr07	irgsp1_rep	CDS	12683835	12683948	.	-	0	Parent=Os07t0408100-02
Chr07	irgsp1_rep	CDS	12680256	12680383	.	-	0	Parent=Os07t0408100-02
Chr07	irgsp1_rep	CDS	12680045	12680183	.	-	1	Parent=Os07t0408100-02
Chr07	irgsp1_rep	CDS	12679678	12679929	.	-	0	Parent=Os07t0408100-02
Chr07	irgsp1_rep	three_prime_UTR	12679536	12679677	.	-	.	Parent=Os07t0408100-02
Chr07	irgsp1_rep	mRNA	12698823	12700637	.	-	.	ID=Os07t0408400-01;Name=Os07t0408400-01;Locus_id=Os07g0408400;Note=Conserved hypothetical protein.;Transcript_evidence=AK070659 (DDBJ%2C Best hit);ORF_evidence=Q69TD7 (UniProt);NIAS_FLcDNA=J023058A09;Expression=AK070659;TENOR=Os07t0408400-01;KEGG=Os07t0408400-01
Chr07	irgsp1_rep	five_prime_UTR	12700225	12700637	.	-	.	Parent=Os07t0408400-01
Chr07	irgsp1_rep	five_prime_UTR	12699827	12699893	.	-	.	Parent=Os07t0408400-01
Chr07	irgsp1_rep	five_prime_UTR	12699458	12699728	.	-	.	Parent=Os07t0408400-01
Chr07	irgsp1_rep	CDS	12699074	12699457	.	-	0	Parent=Os07t0408400-01
Chr07	irgsp1_rep	three_prime_UTR	12698823	12699073	.	-	.	Parent=Os07t0408400-01
Chr07	irgsp1_rep	mRNA	12705367	12708020	.	-	.	ID=Os07t0408500-01;Name=Os07t0408500-01;Locus_id=Os07g0408500;Note=Similar to Rac GTPase activating protein 3 (Fragment).;Transcript_evidence=AK103596 (DDBJ%2C Best hit);ORF_evidence=NP_001148681.1 (RefSeq);GO=Biological Process: signal transduction (GO:0007165),Cellular Component: intracellular (GO:0005622),Molecular Function: protein binding (GO:0005515);InterPro=PAK-box/P21-Rho-binding (IPR000095),Rho GTPase-activating protein domain (IPR000198),Rho GTPase activation protein (IPR008936);NIAS_FLcDNA=J033133E02;Expression=AK103596;TENOR=Os07t0408500-01;KEGG=Os07t0408500-01
Chr07	irgsp1_rep	five_prime_UTR	12707946	12708020	.	-	.	Parent=Os07t0408500-01
Chr07	irgsp1_rep	CDS	12707602	12707945	.	-	0	Parent=Os07t0408500-01
Chr07	irgsp1_rep	CDS	12707350	12707470	.	-	1	Parent=Os07t0408500-01
Chr07	irgsp1_rep	CDS	12707094	12707213	.	-	0	Parent=Os07t0408500-01
Chr07	irgsp1_rep	CDS	12706305	12706535	.	-	0	Parent=Os07t0408500-01
Chr07	irgsp1_rep	CDS	12705568	12706215	.	-	0	Parent=Os07t0408500-01
Chr07	irgsp1_rep	three_prime_UTR	12705367	12705567	.	-	.	Parent=Os07t0408500-01
Chr07	irgsp1_rep	mRNA	12716632	12722874	.	-	.	ID=Os07t0408700-02;Name=Os07t0408700-02;Locus_id=Os07g0408700;CGSNL Gene Symbol=SPDS1;CGSNL Gene Name=SPERMIDINE SYNTHASE 1;Oryzabase Gene Symbol Synonym(s)=OsSPDS1%2C OsSPDS%2C SPDS;Oryzabase Gene Name Synonym(s)=spermidine synthase 1%2C Spermidine synthase;Note=Similar to Spermidine synthase 2 (EC 2.5.1.16) (Putrescine aminopropyltransferase 2) (SPDSY 2).;Transcript_evidence=AK099606 (DDBJ%2C Best hit),AK060916 (DDBJ%2C Best hit);ORF_evidence=Q9SMB1 (UniProt);NIAS_FLcDNA=J013048E04,001-035-G07;Oryzabase=14654;Expression=AK099606;TENOR=Os07t0408700-02;KEGG=Os07t0408700-02 (EC:2.5.1.16)
Chr07	irgsp1_rep	five_prime_UTR	12722747	12722874	.	-	.	Parent=Os07t0408700-02
Chr07	irgsp1_rep	five_prime_UTR	12722586	12722593	.	-	.	Parent=Os07t0408700-02
Chr07	irgsp1_rep	CDS	12722456	12722585	.	-	0	Parent=Os07t0408700-02
Chr07	irgsp1_rep	CDS	12721400	12721476	.	-	2	Parent=Os07t0408700-02
Chr07	irgsp1_rep	CDS	12721189	12721311	.	-	0	Parent=Os07t0408700-02
Chr07	irgsp1_rep	CDS	12719723	12719827	.	-	0	Parent=Os07t0408700-02
Chr07	irgsp1_rep	CDS	12717685	12717757	.	-	0	Parent=Os07t0408700-02
Chr07	irgsp1_rep	CDS	12717498	12717569	.	-	2	Parent=Os07t0408700-02
Chr07	irgsp1_rep	CDS	12717222	12717417	.	-	2	Parent=Os07t0408700-02
Chr07	irgsp1_rep	CDS	12717016	12717145	.	-	1	Parent=Os07t0408700-02
Chr07	irgsp1_rep	CDS	12716869	12716934	.	-	0	Parent=Os07t0408700-02
Chr07	irgsp1_rep	three_prime_UTR	12716632	12716868	.	-	.	Parent=Os07t0408700-02
Chr07	irgsp1_rep	mRNA	12747743	12760653	.	+	.	ID=Os07t0409100-01;Name=Os07t0409100-01;Locus_id=Os07g0409100;CGSNL Gene Symbol=NTMC2T4.1;CGSNL Gene Name=N-TERMINAL-TM-C2 DOMAIN PROTEIN 4.1;Oryzabase Gene Symbol Synonym(s)=OsNTMC2T4.1;Oryzabase Gene Name Synonym(s)=N-terminal-TM-C2 domain protein 4.1%2C N-terminal trans- membrane and C2 domain protein 4.1%2C NTMC2 type 4.1 protein%2C NTMC2 family gene 4.1;Note=Similar to CLB1.;Transcript_evidence=AK060230 (DDBJ%2C Best hit);ORF_evidence=XP_002459742.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),C2 membrane targeting protein (IPR018029),C2 region (IPR020477);NIAS_FLcDNA=001-002-H02;Oryzabase=22127;Expression=AK060230;TENOR=Os07t0409100-01;KEGG=Os07t0409100-01
Chr07	irgsp1_rep	five_prime_UTR	12747743	12747882	.	+	.	Parent=Os07t0409100-01
Chr07	irgsp1_rep	CDS	12747883	12747987	.	+	0	Parent=Os07t0409100-01
Chr07	irgsp1_rep	CDS	12748130	12748231	.	+	0	Parent=Os07t0409100-01
Chr07	irgsp1_rep	CDS	12750054	12750104	.	+	0	Parent=Os07t0409100-01
Chr07	irgsp1_rep	CDS	12750932	12751052	.	+	0	Parent=Os07t0409100-01
Chr07	irgsp1_rep	CDS	12752338	12752456	.	+	2	Parent=Os07t0409100-01
Chr07	irgsp1_rep	CDS	12752554	12752652	.	+	0	Parent=Os07t0409100-01
Chr07	irgsp1_rep	CDS	12753263	12753343	.	+	0	Parent=Os07t0409100-01
Chr07	irgsp1_rep	CDS	12753424	12753506	.	+	0	Parent=Os07t0409100-01
Chr07	irgsp1_rep	CDS	12754756	12754981	.	+	1	Parent=Os07t0409100-01
Chr07	irgsp1_rep	CDS	12757851	12758018	.	+	0	Parent=Os07t0409100-01
Chr07	irgsp1_rep	CDS	12759987	12760379	.	+	0	Parent=Os07t0409100-01
Chr07	irgsp1_rep	three_prime_UTR	12760380	12760653	.	+	.	Parent=Os07t0409100-01
Chr07	irgsp1_rep	mRNA	12763740	12766733	.	+	.	ID=Os07t0409200-01;Name=Os07t0409200-01;Locus_id=Os07g0409200;Note=Carbohydrate kinase%2C FGGY domain containing protein.;Transcript_evidence=AK119912 (DDBJ%2C Best hit);ORF_evidence=B9FWS5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Carbohydrate kinase%2C FGGY (IPR000577);NIAS_FLcDNA=002-183-D01;TENOR=Os07t0409200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	12763740	12763740	.	+	.	Parent=Os07t0409200-01
Chr07	irgsp1_rep	CDS	12763741	12763983	.	+	0	Parent=Os07t0409200-01
Chr07	irgsp1_rep	CDS	12764911	12765043	.	+	0	Parent=Os07t0409200-01
Chr07	irgsp1_rep	CDS	12765174	12765262	.	+	2	Parent=Os07t0409200-01
Chr07	irgsp1_rep	CDS	12765358	12765741	.	+	0	Parent=Os07t0409200-01
Chr07	irgsp1_rep	three_prime_UTR	12765742	12766733	.	+	.	Parent=Os07t0409200-01
Chr07	irgsp1_rep	mRNA	12772243	12774286	.	-	.	ID=Os07t0409400-01;Name=Os07t0409400-01;Locus_id=Os07g0409400;Note=Mitochodrial transcription termination factor-related family protein.;Transcript_evidence=AK106929 (DDBJ%2C Best hit);ORF_evidence=NP_001147866.1 (RefSeq);InterPro=Mitochodrial transcription termination factor-related (IPR003690);NIAS_FLcDNA=002-119-C01;Expression=AK106929;TENOR=Os07t0409400-01;KEGG=Os07t0409400-01
Chr07	irgsp1_rep	five_prime_UTR	12774279	12774286	.	-	.	Parent=Os07t0409400-01
Chr07	irgsp1_rep	CDS	12772551	12774278	.	-	0	Parent=Os07t0409400-01
Chr07	irgsp1_rep	three_prime_UTR	12772243	12772550	.	-	.	Parent=Os07t0409400-01
Chr07	irgsp1_rep	mRNA	12777061	12777976	.	+	.	ID=Os07t0409500-01;Name=Os07t0409500-01;Locus_id=Os07g0409500;Oryzabase Gene Symbol Synonym(s)=OSK21;Oryzabase Gene Name Synonym(s)=S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 21%2C Oryza sativa SKP1-like gene 21%2C SKP1-like protein 1B;Note=BTB/POZ fold domain containing protein.;Transcript_evidence=AK102131 (DDBJ%2C Best hit);ORF_evidence=A2YKH6 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);InterPro=SKP1 component (IPR001232),BTB/POZ fold (IPR011333),SKP1 component%2C dimerisation (IPR016072),SKP1 component%2C POZ (IPR016073),E3 ubiquitin ligase%2C SCF complex%2C Skp subunit (IPR016897);NIAS_FLcDNA=J033085C17;Oryzabase=18289;Expression=AK102131;TENOR=Os07t0409500-01;KEGG=Os07t0409500-01
Chr07	irgsp1_rep	five_prime_UTR	12777061	12777154	.	+	.	Parent=Os07t0409500-01
Chr07	irgsp1_rep	CDS	12777155	12777727	.	+	0	Parent=Os07t0409500-01
Chr07	irgsp1_rep	three_prime_UTR	12777728	12777976	.	+	.	Parent=Os07t0409500-01
Chr07	irgsp1_rep	mRNA	12783973	12790373	.	-	.	ID=Os07t0409700-01;Name=Os07t0409700-01;Locus_id=Os07g0409700;Note=Mitochondrial import inner membrane translocase%2C subunit Tim44 family protein.;Transcript_evidence=AK072253 (DDBJ%2C Best hit),AK065714 (DDBJ%2C Best hit);ORF_evidence=NP_181151.3 (RefSeq);GO=Biological Process: intracellular protein transport (GO:0006886),Cellular Component: mitochondrial inner membrane presequence translocase complex (GO:0005744),Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450);InterPro=Membrane transporter%2C Tim44-related/Ribosomal protein L45 (IPR007379),Apolipoprotein/apolipophorin (IPR013326);NIAS_FLcDNA=J023006L22,J013040N20;Expression=AK072253;TENOR=Os07t0409700-01;KEGG=Os07t0409700-01
Chr07	irgsp1_rep	five_prime_UTR	12790215	12790373	.	-	.	Parent=Os07t0409700-01
Chr07	irgsp1_rep	CDS	12790152	12790214	.	-	0	Parent=Os07t0409700-01
Chr07	irgsp1_rep	CDS	12788680	12788786	.	-	0	Parent=Os07t0409700-01
Chr07	irgsp1_rep	CDS	12788134	12788208	.	-	1	Parent=Os07t0409700-01
Chr07	irgsp1_rep	CDS	12787917	12787992	.	-	1	Parent=Os07t0409700-01
Chr07	irgsp1_rep	CDS	12787765	12787809	.	-	0	Parent=Os07t0409700-01
Chr07	irgsp1_rep	CDS	12787256	12787666	.	-	0	Parent=Os07t0409700-01
Chr07	irgsp1_rep	CDS	12787106	12787174	.	-	0	Parent=Os07t0409700-01
Chr07	irgsp1_rep	CDS	12786954	12787018	.	-	0	Parent=Os07t0409700-01
Chr07	irgsp1_rep	CDS	12786516	12786584	.	-	1	Parent=Os07t0409700-01
Chr07	irgsp1_rep	CDS	12786362	12786434	.	-	1	Parent=Os07t0409700-01
Chr07	irgsp1_rep	CDS	12786031	12786135	.	-	0	Parent=Os07t0409700-01
Chr07	irgsp1_rep	CDS	12785715	12785786	.	-	0	Parent=Os07t0409700-01
Chr07	irgsp1_rep	CDS	12785563	12785625	.	-	0	Parent=Os07t0409700-01
Chr07	irgsp1_rep	CDS	12784807	12784941	.	-	0	Parent=Os07t0409700-01
Chr07	irgsp1_rep	three_prime_UTR	12783973	12784806	.	-	.	Parent=Os07t0409700-01
Chr07	irgsp1_rep	mRNA	12795040	12803562	.	-	.	ID=Os07t0409900-01;Name=Os07t0409900-01;Locus_id=Os07g0409900;RAP-DB Gene Symbol Synonym(s)=CDPK18%2C OsCDPK18%2C OsCPK18%2C CDPK5%2C OsCDPK5%2C CPK18;RAP-DB Gene Name Synonym(s)=CALCIUM-DEPENDENT PROTEIN KINASE 18%2C calcium-dependent protein kinase 18;CGSNL Gene Symbol=CDPK18;CGSNL Gene Name=CALCIUM-DEPENDENT PROTEIN KINASE 18;Oryzabase Gene Symbol Synonym(s)=OsCDPK18%2C OsCPK18%2C CDPK5%2C OsCDPK5%2C CPK18;Oryzabase Gene Name Synonym(s)=calcium-dependent protein kinase 18;Note=Plasma membrane-associated calcium-dependent protein kinase%2C Direct phosphorylation and activation of MAPK%2C Negative reguration of rice immunity;Transcript_evidence=AK121471;ORF_evidence=Q9SE24,Q0D715;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine/threonine/dual specificity protein kinase%2C catalytic  domain (IPR002290),EF-hand domain (IPR002048),EF-hand domain pair (IPR011992),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271),EF-Hand 1%2C calcium-binding site (IPR018247);NIAS_FLcDNA=J023148F12;Manual Curation=August 29%2C 2014;Literature_PMID=25035404;Oryzabase=8069;TENOR=Os07t0409900-01;KEGG=Os07t0409900-01 (EC:2.7.11.17)
Chr07	irgsp1_rep	five_prime_UTR	12803397	12803562	.	-	.	Parent=Os07t0409900-01
Chr07	irgsp1_rep	CDS	12803136	12803396	.	-	0	Parent=Os07t0409900-01
Chr07	irgsp1_rep	CDS	12802115	12802245	.	-	0	Parent=Os07t0409900-01
Chr07	irgsp1_rep	CDS	12801643	12801684	.	-	1	Parent=Os07t0409900-01
Chr07	irgsp1_rep	CDS	12801137	12801248	.	-	1	Parent=Os07t0409900-01
Chr07	irgsp1_rep	CDS	12800988	12801066	.	-	0	Parent=Os07t0409900-01
Chr07	irgsp1_rep	CDS	12800002	12800171	.	-	2	Parent=Os07t0409900-01
Chr07	irgsp1_rep	CDS	12798767	12798893	.	-	0	Parent=Os07t0409900-01
Chr07	irgsp1_rep	CDS	12797882	12797997	.	-	2	Parent=Os07t0409900-01
Chr07	irgsp1_rep	CDS	12797686	12797793	.	-	0	Parent=Os07t0409900-01
Chr07	irgsp1_rep	CDS	12796449	12796511	.	-	0	Parent=Os07t0409900-01
Chr07	irgsp1_rep	CDS	12795559	12795732	.	-	0	Parent=Os07t0409900-01
Chr07	irgsp1_rep	CDS	12795240	12795395	.	-	0	Parent=Os07t0409900-01
Chr07	irgsp1_rep	three_prime_UTR	12795040	12795239	.	-	.	Parent=Os07t0409900-01
Chr07	irgsp1_rep	mRNA	12795131	12803556	.	-	.	ID=Os07t0409900-02;Name=Os07t0409900-02;Locus_id=Os07g0409900;CGSNL Gene Symbol=CDPK18;CGSNL Gene Name=CALCIUM-DEPENDENT PROTEIN KINASE 18;Oryzabase Gene Symbol Synonym(s)=OsCDPK18%2C OsCPK18%2C CDPK5%2C OsCDPK5%2C CPK18;Oryzabase Gene Name Synonym(s)=calcium-dependent protein kinase 18;Note=Similar to Calcium-dependent protein kinase.;Transcript_evidence=AK064772 (DDBJ%2C Best hit);ORF_evidence=Q9SE24 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013000A18;Oryzabase=8069;TENOR=Os07t0409900-02;KEGG=Os07t0409900-02 (EC:2.7.11.-)
Chr07	irgsp1_rep	five_prime_UTR	12803397	12803556	.	-	.	Parent=Os07t0409900-02
Chr07	irgsp1_rep	CDS	12803136	12803396	.	-	0	Parent=Os07t0409900-02
Chr07	irgsp1_rep	CDS	12802111	12802245	.	-	0	Parent=Os07t0409900-02
Chr07	irgsp1_rep	three_prime_UTR	12801643	12802110	.	-	.	Parent=Os07t0409900-02
Chr07	irgsp1_rep	three_prime_UTR	12801137	12801248	.	-	.	Parent=Os07t0409900-02
Chr07	irgsp1_rep	three_prime_UTR	12800988	12801066	.	-	.	Parent=Os07t0409900-02
Chr07	irgsp1_rep	three_prime_UTR	12800002	12800171	.	-	.	Parent=Os07t0409900-02
Chr07	irgsp1_rep	three_prime_UTR	12798767	12798893	.	-	.	Parent=Os07t0409900-02
Chr07	irgsp1_rep	three_prime_UTR	12797882	12797997	.	-	.	Parent=Os07t0409900-02
Chr07	irgsp1_rep	three_prime_UTR	12795559	12797793	.	-	.	Parent=Os07t0409900-02
Chr07	irgsp1_rep	three_prime_UTR	12795131	12795395	.	-	.	Parent=Os07t0409900-02
Chr07	irgsp1_rep	mRNA	12811710	12819394	.	-	.	ID=Os07t0410100-01;Name=Os07t0410100-01;Locus_id=Os07g0410100;Note=Similar to Dihydrolipoamide S-acetyltransferase (EC 2.3.1.12).;Transcript_evidence=AK070846 (DDBJ%2C Best hit);ORF_evidence=NP_001150860.1 (RefSeq);GO=Biological Process: pyruvate metabolic process (GO:0006090),Biological Process: metabolic process (GO:0008152),Cellular Component: pyruvate dehydrogenase complex (GO:0045254),Molecular Function: dihydrolipoyllysine-residue acetyltransferase activity (GO:0004742),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Biotin/lipoyl attachment (IPR000089),2-oxoacid dehydrogenase acyltransferase%2C catalytic domain (IPR001078),2-oxo acid dehydrogenase%2C lipoyl-binding site (IPR003016),E3 binding (IPR004167),Dihydrolipoamide acetyltransferase%2C long form (IPR006257),Single hybrid motif (IPR011053),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J023068C09;Expression=AK070846;TENOR=Os07t0410100-01;KEGG=Os07t0410100-01 (EC:2.3.1.12)
Chr07	irgsp1_rep	five_prime_UTR	12819099	12819394	.	-	.	Parent=Os07t0410100-01
Chr07	irgsp1_rep	CDS	12819063	12819098	.	-	0	Parent=Os07t0410100-01
Chr07	irgsp1_rep	CDS	12818631	12818724	.	-	0	Parent=Os07t0410100-01
Chr07	irgsp1_rep	CDS	12817664	12817737	.	-	2	Parent=Os07t0410100-01
Chr07	irgsp1_rep	CDS	12817486	12817580	.	-	0	Parent=Os07t0410100-01
Chr07	irgsp1_rep	CDS	12817052	12817092	.	-	1	Parent=Os07t0410100-01
Chr07	irgsp1_rep	CDS	12816240	12816295	.	-	2	Parent=Os07t0410100-01
Chr07	irgsp1_rep	CDS	12815797	12815871	.	-	0	Parent=Os07t0410100-01
Chr07	irgsp1_rep	CDS	12815576	12815668	.	-	0	Parent=Os07t0410100-01
Chr07	irgsp1_rep	CDS	12815206	12815454	.	-	0	Parent=Os07t0410100-01
Chr07	irgsp1_rep	CDS	12815040	12815112	.	-	0	Parent=Os07t0410100-01
Chr07	irgsp1_rep	CDS	12813864	12813940	.	-	2	Parent=Os07t0410100-01
Chr07	irgsp1_rep	CDS	12813691	12813776	.	-	0	Parent=Os07t0410100-01
Chr07	irgsp1_rep	CDS	12813477	12813552	.	-	1	Parent=Os07t0410100-01
Chr07	irgsp1_rep	CDS	12813261	12813328	.	-	0	Parent=Os07t0410100-01
Chr07	irgsp1_rep	CDS	12813116	12813182	.	-	1	Parent=Os07t0410100-01
Chr07	irgsp1_rep	CDS	12812958	12813053	.	-	0	Parent=Os07t0410100-01
Chr07	irgsp1_rep	CDS	12812776	12812878	.	-	0	Parent=Os07t0410100-01
Chr07	irgsp1_rep	CDS	12812344	12812439	.	-	2	Parent=Os07t0410100-01
Chr07	irgsp1_rep	CDS	12812185	12812255	.	-	2	Parent=Os07t0410100-01
Chr07	irgsp1_rep	three_prime_UTR	12811710	12812184	.	-	.	Parent=Os07t0410100-01
Chr07	irgsp1_rep	mRNA	12826360	12827317	.	-	.	ID=Os07t0410300-01;Name=Os07t0410300-01;Locus_id=Os07g0410300;CGSNL Gene Symbol=ERF136;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 136;Oryzabase Gene Symbol Synonym(s)=OsERF#136%2C OsERF136%2C AP2/EREBP#106%2C AP2/EREBP106%2C AP2-106;Oryzabase Gene Name Synonym(s)=ethylene response factor 136%2C APETALA2/ethylene-responsive element binding protein 106;Note=Conserved hypothetical protein.;Transcript_evidence=AK108503 (DDBJ%2C Best hit);ORF_evidence=Q7EYP8 (UniProt);NIAS_FLcDNA=002-143-H07;Oryzabase=10629;TENOR=Os07t0410300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	12827214	12827317	.	-	.	Parent=Os07t0410300-01
Chr07	irgsp1_rep	CDS	12827056	12827213	.	-	0	Parent=Os07t0410300-01
Chr07	irgsp1_rep	CDS	12826555	12826996	.	-	1	Parent=Os07t0410300-01
Chr07	irgsp1_rep	three_prime_UTR	12826360	12826554	.	-	.	Parent=Os07t0410300-01
Chr07	irgsp1_rep	mRNA	12846933	12848424	.	-	.	ID=Os07t0410700-01;Name=Os07t0410700-01;Locus_id=Os07g0410700;CGSNL Gene Symbol=ERF86;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 86;Oryzabase Gene Symbol Synonym(s)=DERF2%2C OsDERF2%2C OsERF#086%2C OsERF086%2C OsERF86%2C AP2/EREBP#074%2C AP2/EREBP74%2C OsERF1;Oryzabase Gene Name Synonym(s)=drought-responsive ethylene response factor 2%2C drought-responsive ERF 2%2C ethylene response factor 86%2C ethylene response factor 1%2C APETALA2/ethylene-responsive element binding protein 74;Note=Similar to Ethylene-responsive element binding protein 1.;Transcript_evidence=AK062612 (DDBJ%2C Best hit);ORF_evidence=B8B5E9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=001-105-A10;Oryzabase=9688;Expression=AK062612;TENOR=Os07t0410700-01;KEGG=Os07t0410700-01
Chr07	irgsp1_rep	five_prime_UTR	12848354	12848424	.	-	.	Parent=Os07t0410700-01
Chr07	irgsp1_rep	CDS	12847634	12848353	.	-	0	Parent=Os07t0410700-01
Chr07	irgsp1_rep	three_prime_UTR	12846933	12847633	.	-	.	Parent=Os07t0410700-01
Chr07	irgsp1_rep	mRNA	12882111	12883584	.	+	.	ID=Os07t0411200-01;Name=Os07t0411200-01;Locus_id=Os07g0411200;Oryzabase Gene Symbol Synonym(s)=OsRFPH2-13;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPH2-13%2C RING-H2 protein 13;Note=Similar to Anaphase promoting complex subunit 11 (APC11) (Cyclosome subunit 11) (Hepatocellular carcinoma associated RING finger protein).;Transcript_evidence=AK241675 (DDBJ%2C Best hit);ORF_evidence=NP_001152943.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J065192I01;Oryzabase=11774;TENOR=Os07t0411200-01;KEGG=Os07t0411200-01
Chr07	irgsp1_rep	five_prime_UTR	12882111	12882441	.	+	.	Parent=Os07t0411200-01
Chr07	irgsp1_rep	five_prime_UTR	12883171	12883178	.	+	.	Parent=Os07t0411200-01
Chr07	irgsp1_rep	CDS	12883179	12883433	.	+	0	Parent=Os07t0411200-01
Chr07	irgsp1_rep	three_prime_UTR	12883434	12883584	.	+	.	Parent=Os07t0411200-01
Chr07	irgsp1_rep	mRNA	12882121	12883346	.	-	.	ID=Os07t0411250-00;Name=Os07t0411250-00;Locus_id=Os07g0411250;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2YKI3 (UniProt);TENOR=Os07t0411250-00
Chr07	irgsp1_rep	CDS	12883127	12883346	.	-	0	Parent=Os07t0411250-00
Chr07	irgsp1_rep	CDS	12882121	12882464	.	-	2	Parent=Os07t0411250-00
Chr07	irgsp1_rep	mRNA	12884746	12886091	.	-	.	ID=Os07t0411300-01;Name=Os07t0411300-01;Locus_id=Os07g0411300;RAP-DB Gene Symbol Synonym(s)=OsPKS2;RAP-DB Gene Name Synonym(s)=polyketide synthase 2;CGSNL Gene Symbol=PKS10;CGSNL Gene Name=POLYKETIDE SYNTHASE 10;Oryzabase Gene Symbol Synonym(s)=OsPKS10%2C OsPKS2%2C PKS2;Oryzabase Gene Name Synonym(s)=polyketide synthase 10%2C polyketide synthase 2;Note=Polyketide synthase%2C Pollen exine and Ubisch body patterning%2C Pollen wall formation;Transcript_evidence=ab initio prediction;ORF_evidence=Q8H305;GO=Biological Process: metabolic process (GO:0008152),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Thiolase-like (IPR016039),Polyketide synthase%2C type III (IPR011141),Chalcone/stilbene synthase%2C N-terminal (IPR001099),Chalcone/stilbene synthase%2C C-terminal (IPR012328);Manual Curation=February 15%2C 2018;Literature_PMID=29411094;Oryzabase=21559;TENOR=Os07t0411300-00;Subcellular location=endoplasmic reticulum (GO:0005783)
Chr07	irgsp1_rep	CDS	12885896	12886091	.	-	0	Parent=Os07t0411300-01
Chr07	irgsp1_rep	CDS	12884746	12885767	.	-	2	Parent=Os07t0411300-01
Chr07	irgsp1_rep	mRNA	12884929	12885728	.	+	.	ID=Os07t0411566-00;Name=Os07t0411566-00;Locus_id=Os07g0411566;Note=Hypothetical protein.;Transcript_evidence=EU966441 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0411566-00
Chr07	irgsp1_rep	CDS	12884929	12885728	.	+	0	Parent=Os07t0411566-00
Chr07	irgsp1_rep	mRNA	12916883	12924202	.	-	.	ID=Os07t0412100-01;Name=Os07t0412100-01;Locus_id=Os07g0412100;CGSNL Gene Symbol=GBSSII;CGSNL Gene Name=GRANULE BOUND STARCH SYNTHASE II;Oryzabase Gene Symbol Synonym(s)=GBSS2%2C OsGBSSII%2C OsGBSS2;Oryzabase Gene Name Synonym(s)=Granule-bound starch synthase Ib%2C Granule-bound starch synthase II;Note=Similar to Granule-bound starch synthase Ib%2C chloroplast precursor (EC 2.4.1.21) (Fragment).;Transcript_evidence=AK067654 (DDBJ%2C Best hit),AK102058 (DDBJ%2C Best hit);ORF_evidence=D0TZD9 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Biological Process: glucan biosynthetic process (GO:0009250),Molecular Function: starch synthase activity (GO:0009011);InterPro=Glycosyl transferase%2C family 1 (IPR001296),Glycogen/starch synthases%2C ADP-glucose type (IPR011835),Starch synthase%2C catalytic domain (IPR013534);NIAS_FLcDNA=J013116B03,J033082D07;Oryzabase=8901;Expression=AK067654;TENOR=Os07t0412100-01;KEGG=Os07t0412100-01 (EC:2.4.1.21)
Chr07	irgsp1_rep	five_prime_UTR	12924097	12924202	.	-	.	Parent=Os07t0412100-01
Chr07	irgsp1_rep	five_prime_UTR	12921127	12921136	.	-	.	Parent=Os07t0412100-01
Chr07	irgsp1_rep	CDS	12920794	12921126	.	-	0	Parent=Os07t0412100-01
Chr07	irgsp1_rep	CDS	12920396	12920476	.	-	0	Parent=Os07t0412100-01
Chr07	irgsp1_rep	CDS	12920200	12920298	.	-	0	Parent=Os07t0412100-01
Chr07	irgsp1_rep	CDS	12920012	12920101	.	-	0	Parent=Os07t0412100-01
Chr07	irgsp1_rep	CDS	12919516	12919579	.	-	0	Parent=Os07t0412100-01
Chr07	irgsp1_rep	CDS	12919330	12919430	.	-	2	Parent=Os07t0412100-01
Chr07	irgsp1_rep	CDS	12919089	12919198	.	-	0	Parent=Os07t0412100-01
Chr07	irgsp1_rep	CDS	12918753	12918999	.	-	1	Parent=Os07t0412100-01
Chr07	irgsp1_rep	CDS	12918509	12918685	.	-	0	Parent=Os07t0412100-01
Chr07	irgsp1_rep	CDS	12918236	12918427	.	-	0	Parent=Os07t0412100-01
Chr07	irgsp1_rep	CDS	12917901	12917987	.	-	0	Parent=Os07t0412100-01
Chr07	irgsp1_rep	CDS	12917686	12917814	.	-	0	Parent=Os07t0412100-01
Chr07	irgsp1_rep	CDS	12917178	12917294	.	-	0	Parent=Os07t0412100-01
Chr07	irgsp1_rep	three_prime_UTR	12916883	12917177	.	-	.	Parent=Os07t0412100-01
Chr07	irgsp1_rep	mRNA	12916973	12921186	.	-	.	ID=Os07t0412100-02;Name=Os07t0412100-02;Locus_id=Os07g0412100;RAP-DB Gene Symbol Synonym(s)=GBSSII%2C Granule-bound starch synthase Ib%2C Granule-bound starch synthase II;RAP-DB Gene Name Synonym(s)=GRANULE BOUND STARCH SYNTHASE II%2C Granule-bound starch synthase II;CGSNL Gene Symbol=GBSSII;CGSNL Gene Name=GRANULE BOUND STARCH SYNTHASE II;Oryzabase Gene Symbol Synonym(s)=GBSS2%2C OsGBSSII%2C OsGBSS2;Oryzabase Gene Name Synonym(s)=Granule-bound starch synthase Ib%2C Granule-bound starch synthase II;Note=Granule-bound starch synthase 2%2C Starch biosynthesis;Transcript_evidence=AY069940 (Oryza sativa);ORF_evidence=Q8VYU1,Q8GTK0;GO=Biological Process: biosynthetic process (GO:0009058),Biological Process: glucan biosynthetic process (GO:0009250),Molecular Function: starch synthase activity (GO:0009011);InterPro=Glycogen/starch synthase%2C ADP-glucose type (IPR011835),Starch synthase%2C catalytic domain (IPR013534),Glycosyl transferase%2C family 1 (IPR001296);Manual Curation=March 15%2C 2010;Literature_PMID=15232694,21595523;Oryzabase=8901;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	12921127	12921186	.	-	.	Parent=Os07t0412100-02
Chr07	irgsp1_rep	CDS	12920794	12921126	.	-	0	Parent=Os07t0412100-02
Chr07	irgsp1_rep	CDS	12920396	12920476	.	-	0	Parent=Os07t0412100-02
Chr07	irgsp1_rep	CDS	12920200	12920298	.	-	0	Parent=Os07t0412100-02
Chr07	irgsp1_rep	CDS	12920012	12920101	.	-	0	Parent=Os07t0412100-02
Chr07	irgsp1_rep	CDS	12919516	12919579	.	-	0	Parent=Os07t0412100-02
Chr07	irgsp1_rep	CDS	12919330	12919430	.	-	2	Parent=Os07t0412100-02
Chr07	irgsp1_rep	CDS	12919089	12919198	.	-	0	Parent=Os07t0412100-02
Chr07	irgsp1_rep	CDS	12918753	12918999	.	-	1	Parent=Os07t0412100-02
Chr07	irgsp1_rep	CDS	12918509	12918685	.	-	0	Parent=Os07t0412100-02
Chr07	irgsp1_rep	CDS	12918236	12918427	.	-	0	Parent=Os07t0412100-02
Chr07	irgsp1_rep	CDS	12917901	12917987	.	-	0	Parent=Os07t0412100-02
Chr07	irgsp1_rep	CDS	12917686	12917814	.	-	0	Parent=Os07t0412100-02
Chr07	irgsp1_rep	CDS	12917178	12917294	.	-	0	Parent=Os07t0412100-02
Chr07	irgsp1_rep	three_prime_UTR	12916973	12917177	.	-	.	Parent=Os07t0412100-02
Chr07	irgsp1_rep	mRNA	12926512	12930673	.	+	.	ID=Os07t0412400-01;Name=Os07t0412400-01;Locus_id=Os07g0412400;Note=Similar to Adenylate kinase isoenzyme 6 (EC 2.7.4.3) (ATP-AMP transphosphorylase 6).;Transcript_evidence=AK102184 (DDBJ%2C Best hit);ORF_evidence=B8B5F5 (UniProt);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleobase-containing compound kinase activity (GO:0019205);InterPro=Adenylate kinase (IPR000850);NIAS_FLcDNA=J033086M16;Expression=AK102184;TENOR=Os07t0412400-01;KEGG=Os07t0412400-01 (EC:2.7.4.3)
Chr07	irgsp1_rep	five_prime_UTR	12926512	12926524	.	+	.	Parent=Os07t0412400-01
Chr07	irgsp1_rep	CDS	12926525	12926731	.	+	0	Parent=Os07t0412400-01
Chr07	irgsp1_rep	CDS	12929914	12930059	.	+	0	Parent=Os07t0412400-01
Chr07	irgsp1_rep	CDS	12930146	12930335	.	+	1	Parent=Os07t0412400-01
Chr07	irgsp1_rep	three_prime_UTR	12930336	12930673	.	+	.	Parent=Os07t0412400-01
Chr07	irgsp1_rep	mRNA	12989631	12995232	.	-	.	ID=Os07t0413300-01;Name=Os07t0413300-01;Locus_id=Os07g0413300;Note=Protein of unknown function DUF1409 domain containing protein.;Transcript_evidence=AK111648 (DDBJ%2C Best hit);ORF_evidence=B7F4K4 (UniProt);InterPro=Domain of unknown function DUF1409 (IPR010811);NIAS_FLcDNA=J013131H13;TENOR=Os07t0413300-01
Chr07	irgsp1_rep	five_prime_UTR	12994784	12995232	.	-	.	Parent=Os07t0413300-01
Chr07	irgsp1_rep	five_prime_UTR	12994365	12994449	.	-	.	Parent=Os07t0413300-01
Chr07	irgsp1_rep	five_prime_UTR	12992610	12992709	.	-	.	Parent=Os07t0413300-01
Chr07	irgsp1_rep	five_prime_UTR	12992088	12992532	.	-	.	Parent=Os07t0413300-01
Chr07	irgsp1_rep	CDS	12992058	12992087	.	-	0	Parent=Os07t0413300-01
Chr07	irgsp1_rep	CDS	12991935	12991988	.	-	0	Parent=Os07t0413300-01
Chr07	irgsp1_rep	CDS	12991755	12991862	.	-	0	Parent=Os07t0413300-01
Chr07	irgsp1_rep	CDS	12991203	12991679	.	-	0	Parent=Os07t0413300-01
Chr07	irgsp1_rep	three_prime_UTR	12989631	12991202	.	-	.	Parent=Os07t0413300-01
Chr07	irgsp1_rep	mRNA	12991150	12995231	.	-	.	ID=Os07t0413300-02;Name=Os07t0413300-02;Locus_id=Os07g0413300;Note=Protein of unknown function DUF1409 domain containing protein.;Transcript_evidence=AK112113 (DDBJ%2C Best hit);ORF_evidence=C8TFB2 (UniProt);InterPro=Domain of unknown function DUF1409 (IPR010811);NIAS_FLcDNA=002-120-D12;TENOR=Os07t0413300-02
Chr07	irgsp1_rep	five_prime_UTR	12994784	12995231	.	-	.	Parent=Os07t0413300-02
Chr07	irgsp1_rep	five_prime_UTR	12994365	12994449	.	-	.	Parent=Os07t0413300-02
Chr07	irgsp1_rep	five_prime_UTR	12992610	12992709	.	-	.	Parent=Os07t0413300-02
Chr07	irgsp1_rep	five_prime_UTR	12992088	12992532	.	-	.	Parent=Os07t0413300-02
Chr07	irgsp1_rep	CDS	12992058	12992087	.	-	0	Parent=Os07t0413300-02
Chr07	irgsp1_rep	CDS	12991935	12991985	.	-	0	Parent=Os07t0413300-02
Chr07	irgsp1_rep	CDS	12991755	12991862	.	-	0	Parent=Os07t0413300-02
Chr07	irgsp1_rep	CDS	12991203	12991679	.	-	0	Parent=Os07t0413300-02
Chr07	irgsp1_rep	three_prime_UTR	12991150	12991202	.	-	.	Parent=Os07t0413300-02
Chr07	irgsp1_rep	mRNA	13026440	13037115	.	+	.	ID=Os07t0413700-01;Name=Os07t0413700-01;Locus_id=Os07g0413700;CGSNL Gene Symbol=PARP1;CGSNL Gene Name=POLY(ADP-RIBOSE) POLYMERASE 1;Oryzabase Gene Symbol Synonym(s)=OsPARP1%2C PARP;Oryzabase Gene Name Synonym(s)=poly(ADP-ribose) polymerase 1;Note=Similar to Poly(ADP)-ribose polymerase (EC 2.4.2.30).;Transcript_evidence=AK103479 (DDBJ%2C Best hit);ORF_evidence=Q7EYV7 (UniProt);GO=Biological Process: protein ADP-ribosylation (GO:0006471),Cellular Component: intracellular (GO:0005622),Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: NAD+ ADP-ribosyltransferase activity (GO:0003950),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: NAD binding (GO:0051287);InterPro=BRCT (IPR001357),Zinc finger%2C PARP-type (IPR001510),DNA-binding SAP (IPR003034),Poly(ADP-ribose) polymerase%2C regulatory domain (IPR004102),NAD+ ADP-ribosyltransferase (IPR008288),WGR domain (IPR008893),Poly(ADP-ribose) polymerase%2C catalytic domain (IPR012317),PADR1 (IPR012982);NIAS_FLcDNA=J033130E20;Oryzabase=21306;Expression=AK103479;TENOR=Os07t0413700-01;KEGG=Os07t0413700-01 (EC:2.4.2.30)
Chr07	irgsp1_rep	five_prime_UTR	13026440	13026522	.	+	.	Parent=Os07t0413700-01
Chr07	irgsp1_rep	CDS	13026523	13026666	.	+	0	Parent=Os07t0413700-01
Chr07	irgsp1_rep	CDS	13028088	13028137	.	+	0	Parent=Os07t0413700-01
Chr07	irgsp1_rep	CDS	13028263	13028449	.	+	1	Parent=Os07t0413700-01
Chr07	irgsp1_rep	CDS	13029457	13029622	.	+	0	Parent=Os07t0413700-01
Chr07	irgsp1_rep	CDS	13029701	13030004	.	+	2	Parent=Os07t0413700-01
Chr07	irgsp1_rep	CDS	13030734	13030929	.	+	1	Parent=Os07t0413700-01
Chr07	irgsp1_rep	CDS	13031043	13031201	.	+	0	Parent=Os07t0413700-01
Chr07	irgsp1_rep	CDS	13031890	13031950	.	+	0	Parent=Os07t0413700-01
Chr07	irgsp1_rep	CDS	13032483	13032546	.	+	2	Parent=Os07t0413700-01
Chr07	irgsp1_rep	CDS	13032678	13032933	.	+	1	Parent=Os07t0413700-01
Chr07	irgsp1_rep	CDS	13033590	13033829	.	+	0	Parent=Os07t0413700-01
Chr07	irgsp1_rep	CDS	13033923	13034035	.	+	0	Parent=Os07t0413700-01
Chr07	irgsp1_rep	CDS	13034126	13034202	.	+	1	Parent=Os07t0413700-01
Chr07	irgsp1_rep	CDS	13034289	13034452	.	+	2	Parent=Os07t0413700-01
Chr07	irgsp1_rep	CDS	13035144	13035332	.	+	0	Parent=Os07t0413700-01
Chr07	irgsp1_rep	CDS	13035467	13035578	.	+	0	Parent=Os07t0413700-01
Chr07	irgsp1_rep	CDS	13035937	13036019	.	+	2	Parent=Os07t0413700-01
Chr07	irgsp1_rep	CDS	13036113	13036250	.	+	0	Parent=Os07t0413700-01
Chr07	irgsp1_rep	CDS	13036521	13036703	.	+	0	Parent=Os07t0413700-01
Chr07	irgsp1_rep	CDS	13036795	13036842	.	+	0	Parent=Os07t0413700-01
Chr07	irgsp1_rep	three_prime_UTR	13036843	13037115	.	+	.	Parent=Os07t0413700-01
Chr07	irgsp1_rep	mRNA	13032497	13037153	.	+	.	ID=Os07t0413700-02;Name=Os07t0413700-02;Locus_id=Os07g0413700;CGSNL Gene Symbol=PARP1;CGSNL Gene Name=POLY(ADP-RIBOSE) POLYMERASE 1;Oryzabase Gene Symbol Synonym(s)=OsPARP1%2C PARP;Oryzabase Gene Name Synonym(s)=poly(ADP-ribose) polymerase 1;Note=Similar to Poly.;Transcript_evidence=AK106540 (DDBJ%2C Best hit);ORF_evidence=Q7EYV7 (UniProt);GO=Biological Process: protein ADP-ribosylation (GO:0006471),Cellular Component: intracellular (GO:0005622),Molecular Function: NAD+ ADP-ribosyltransferase activity (GO:0003950);InterPro=BRCT (IPR001357),Poly(ADP-ribose) polymerase%2C regulatory domain (IPR004102),WGR domain (IPR008893),Poly(ADP-ribose) polymerase%2C catalytic domain (IPR012317);NIAS_FLcDNA=002-108-D11;Oryzabase=21306;Expression=AK106540;TENOR=Os07t0413700-02;KEGG=Os07t0413700-02 (EC:2.4.2.30)
Chr07	irgsp1_rep	CDS	13032497	13032546	.	+	0	Parent=Os07t0413700-02
Chr07	irgsp1_rep	CDS	13032678	13032933	.	+	1	Parent=Os07t0413700-02
Chr07	irgsp1_rep	CDS	13033590	13033829	.	+	0	Parent=Os07t0413700-02
Chr07	irgsp1_rep	CDS	13033923	13034035	.	+	0	Parent=Os07t0413700-02
Chr07	irgsp1_rep	CDS	13034126	13034202	.	+	1	Parent=Os07t0413700-02
Chr07	irgsp1_rep	CDS	13034289	13034452	.	+	2	Parent=Os07t0413700-02
Chr07	irgsp1_rep	CDS	13035144	13035332	.	+	0	Parent=Os07t0413700-02
Chr07	irgsp1_rep	CDS	13035467	13035578	.	+	0	Parent=Os07t0413700-02
Chr07	irgsp1_rep	CDS	13035937	13036019	.	+	2	Parent=Os07t0413700-02
Chr07	irgsp1_rep	CDS	13036113	13036250	.	+	0	Parent=Os07t0413700-02
Chr07	irgsp1_rep	CDS	13036521	13036703	.	+	0	Parent=Os07t0413700-02
Chr07	irgsp1_rep	CDS	13036795	13036842	.	+	0	Parent=Os07t0413700-02
Chr07	irgsp1_rep	three_prime_UTR	13036843	13037153	.	+	.	Parent=Os07t0413700-02
Chr07	irgsp1_rep	mRNA	13037561	13038640	.	-	.	ID=Os07t0413800-01;Name=Os07t0413800-01;Locus_id=Os07g0413800;Note=Conserved hypothetical protein.;Transcript_evidence=AK104124 (DDBJ%2C Best hit),AK061478 (DDBJ%2C Best hit),AK120684 (DDBJ%2C Best hit);ORF_evidence=B9FWT3 (UniProt);NIAS_FLcDNA=006-203-D05,006-308-G06,J013164D19;Expression=AK104124;TENOR=Os07t0413800-01;KEGG=Os07t0413800-01
Chr07	irgsp1_rep	five_prime_UTR	13038516	13038640	.	-	.	Parent=Os07t0413800-01
Chr07	irgsp1_rep	CDS	13037658	13038515	.	-	0	Parent=Os07t0413800-01
Chr07	irgsp1_rep	three_prime_UTR	13037561	13037657	.	-	.	Parent=Os07t0413800-01
Chr07	irgsp1_rep	mRNA	13037553	13038506	.	-	.	ID=Os07t0413800-04;Name=Os07t0413800-04;Locus_id=Os07g0413800;Note=Similar to predicted protein.;Transcript_evidence=AK060411 (DDBJ%2C Best hit),AK104173 (DDBJ%2C Best hit);ORF_evidence=B9FWT3 (UniProt);NIAS_FLcDNA=001-010-E03,006-301-B12;Expression=AK060411;TENOR=Os07t0413800-04;KEGG=Os07t0413800-04
Chr07	irgsp1_rep	five_prime_UTR	13038486	13038506	.	-	.	Parent=Os07t0413800-04
Chr07	irgsp1_rep	CDS	13037658	13038485	.	-	0	Parent=Os07t0413800-04
Chr07	irgsp1_rep	three_prime_UTR	13037553	13037657	.	-	.	Parent=Os07t0413800-04
Chr07	irgsp1_rep	mRNA	13053764	13055292	.	+	.	ID=Os07t0414000-01;Name=Os07t0414000-01;Locus_id=Os07g0414000;Note=Transferase domain containing protein.;Transcript_evidence=AK060507 (DDBJ%2C Best hit);ORF_evidence=B9FWT5 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=001-019-A03;TENOR=Os07t0414000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	13053764	13053765	.	+	.	Parent=Os07t0414000-01
Chr07	irgsp1_rep	CDS	13053766	13055187	.	+	0	Parent=Os07t0414000-01
Chr07	irgsp1_rep	three_prime_UTR	13055188	13055292	.	+	.	Parent=Os07t0414000-01
Chr07	irgsp1_rep	mRNA	13057843	13068285	.	-	.	ID=Os07t0414200-01;Name=Os07t0414200-01;Locus_id=Os07g0414200;Note=Methyltransferase%2C METTL2%2C predicted domain containing protein.;Transcript_evidence=AK067835 (DDBJ%2C Best hit);ORF_evidence=F1DGA0 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Methyltransferase type 12 (IPR013217),Methyltransferase%2C METTL2%2C predicted (IPR017280);NIAS_FLcDNA=J013121M11;Expression=AK067835;TENOR=Os07t0414200-01;KEGG=Os07t0414200-01
Chr07	irgsp1_rep	five_prime_UTR	13068029	13068285	.	-	.	Parent=Os07t0414200-01
Chr07	irgsp1_rep	CDS	13067807	13068028	.	-	0	Parent=Os07t0414200-01
Chr07	irgsp1_rep	CDS	13066934	13067043	.	-	0	Parent=Os07t0414200-01
Chr07	irgsp1_rep	CDS	13065396	13065577	.	-	1	Parent=Os07t0414200-01
Chr07	irgsp1_rep	CDS	13065197	13065285	.	-	2	Parent=Os07t0414200-01
Chr07	irgsp1_rep	CDS	13064941	13065043	.	-	0	Parent=Os07t0414200-01
Chr07	irgsp1_rep	CDS	13064724	13064866	.	-	2	Parent=Os07t0414200-01
Chr07	irgsp1_rep	CDS	13058088	13058183	.	-	0	Parent=Os07t0414200-01
Chr07	irgsp1_rep	three_prime_UTR	13057843	13058087	.	-	.	Parent=Os07t0414200-01
Chr07	irgsp1_rep	mRNA	13072251	13073480	.	+	.	ID=Os07t0414700-00;Name=Os07t0414700-00;Locus_id=Os07g0414700;Note=Protein of unknown function DUF707 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8H359 (UniProt);InterPro=Protein of unknown function DUF707 (IPR007877);TENOR=Os07t0414700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	13072251	13072766	.	+	0	Parent=Os07t0414700-00
Chr07	irgsp1_rep	CDS	13072830	13073480	.	+	0	Parent=Os07t0414700-00
Chr07	irgsp1_rep	mRNA	13074446	13077622	.	-	.	ID=Os07t0414800-01;Name=Os07t0414800-01;Locus_id=Os07g0414800;Note=F-actin capping protein%2C alpha subunit family protein.;Transcript_evidence=AK108552 (DDBJ%2C Best hit);ORF_evidence=NP_001151489.1 (RefSeq);GO=Biological Process: actin cytoskeleton organization (GO:0030036),Cellular Component: F-actin capping protein complex (GO:0008290),Molecular Function: actin binding (GO:0003779);InterPro=WASH complex%2C F-actin capping protein%2C alpha subunit (IPR002189),F-actin capping protein%2C alpha subunit%2C conserved site (IPR017865);NIAS_FLcDNA=002-144-E06;Expression=AK108552;TENOR=Os07t0414800-01;KEGG=Os07t0414800-01
Chr07	irgsp1_rep	five_prime_UTR	13077621	13077622	.	-	.	Parent=Os07t0414800-01
Chr07	irgsp1_rep	CDS	13077576	13077620	.	-	0	Parent=Os07t0414800-01
Chr07	irgsp1_rep	CDS	13076765	13076829	.	-	0	Parent=Os07t0414800-01
Chr07	irgsp1_rep	CDS	13076508	13076669	.	-	1	Parent=Os07t0414800-01
Chr07	irgsp1_rep	CDS	13075991	13076069	.	-	1	Parent=Os07t0414800-01
Chr07	irgsp1_rep	CDS	13075824	13075901	.	-	0	Parent=Os07t0414800-01
Chr07	irgsp1_rep	CDS	13075014	13075088	.	-	0	Parent=Os07t0414800-01
Chr07	irgsp1_rep	CDS	13074898	13074933	.	-	0	Parent=Os07t0414800-01
Chr07	irgsp1_rep	CDS	13074669	13074776	.	-	0	Parent=Os07t0414800-01
Chr07	irgsp1_rep	three_prime_UTR	13074446	13074668	.	-	.	Parent=Os07t0414800-01
Chr07	irgsp1_rep	mRNA	13079421	13082692	.	+	.	ID=Os07t0414900-01;Name=Os07t0414900-01;Locus_id=Os07g0414900;Note=Similar to Transposable element Ac.;Transcript_evidence=AK099673 (DDBJ%2C Best hit);ORF_evidence=Q9SAP9 (UniProt);GO=Molecular Function: DNA binding (GO:0003677);InterPro=Zinc finger%2C BED-type predicted (IPR003656);NIAS_FLcDNA=J013069E13;TENOR=Os07t0414900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	13079421	13079464	.	+	.	Parent=Os07t0414900-01
Chr07	irgsp1_rep	five_prime_UTR	13079876	13081927	.	+	.	Parent=Os07t0414900-01
Chr07	irgsp1_rep	CDS	13081928	13082692	.	+	0	Parent=Os07t0414900-01
Chr07	irgsp1_rep	mRNA	13081471	13084590	.	+	.	ID=Os07t0414900-02;Name=Os07t0414900-02;Locus_id=Os07g0414900;Note=Similar to Transposase (Fragment).;Transcript_evidence=AK068756 (DDBJ%2C Best hit);ORF_evidence=P08770 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J013159B11;Expression=AK068756;TENOR=Os07t0414900-02;KEGG=Os07t0414900-02
Chr07	irgsp1_rep	five_prime_UTR	13081471	13081927	.	+	.	Parent=Os07t0414900-02
Chr07	irgsp1_rep	CDS	13081928	13082902	.	+	0	Parent=Os07t0414900-02
Chr07	irgsp1_rep	three_prime_UTR	13082903	13084062	.	+	.	Parent=Os07t0414900-02
Chr07	irgsp1_rep	three_prime_UTR	13084150	13084223	.	+	.	Parent=Os07t0414900-02
Chr07	irgsp1_rep	three_prime_UTR	13084322	13084590	.	+	.	Parent=Os07t0414900-02
Chr07	irgsp1_rep	mRNA	13098647	13103696	.	+	.	ID=Os07t0415200-01;Name=Os07t0415200-01;Locus_id=Os07g0415200;Note=Ribosomal protein L25/L23 domain containing protein.;Transcript_evidence=AK061243 (DDBJ%2C Best hit),AK101796 (DDBJ%2C Best hit),AK104106 (DDBJ%2C Best hit);ORF_evidence=B6T8M0 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Nucleotide-binding%2C alpha-beta plait (IPR012677),Ribosomal protein L23/L15e (IPR012678),Ribosomal protein L25/L23 (IPR013025);NIAS_FLcDNA=006-211-D04,J033066C05,006-202-D02;TENOR=Os07t0415200-01
Chr07	irgsp1_rep	five_prime_UTR	13098647	13098700	.	+	.	Parent=Os07t0415200-01
Chr07	irgsp1_rep	CDS	13098701	13099290	.	+	0	Parent=Os07t0415200-01
Chr07	irgsp1_rep	CDS	13103238	13103337	.	+	1	Parent=Os07t0415200-01
Chr07	irgsp1_rep	three_prime_UTR	13103338	13103696	.	+	.	Parent=Os07t0415200-01
Chr07	irgsp1_rep	mRNA	13152312	13152738	.	-	.	ID=Os07t0416100-01;Name=Os07t0416100-01;Locus_id=Os07g0416100;Note=Similar to WRKY transcription factor 53 (Transcription factor WRKY12).;Transcript_evidence=AK063097 (DDBJ%2C Best hit);ORF_evidence=Q6IEP8 (UniProt);NIAS_FLcDNA=001-111-C02;Expression=AK063097;TENOR=Os07t0416100-01;KEGG=Os07t0416100-01
Chr07	irgsp1_rep	five_prime_UTR	13152674	13152738	.	-	.	Parent=Os07t0416100-01
Chr07	irgsp1_rep	CDS	13152458	13152673	.	-	0	Parent=Os07t0416100-01
Chr07	irgsp1_rep	three_prime_UTR	13152312	13152457	.	-	.	Parent=Os07t0416100-01
Chr07	irgsp1_rep	mRNA	13177827	13178470	.	-	.	ID=Os07t0416600-00;Name=Os07t0416600-00;Locus_id=Os07g0416600;Note=Similar to OSIGBa0092G14.1 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01KY1 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=Male sterility%2C NAD-binding (IPR013120),NAD(P)-binding domain (IPR016040);TENOR=Os07t0416600-00;KEGG=Os07t0416600-00
Chr07	irgsp1_rep	CDS	13178392	13178470	.	-	0	Parent=Os07t0416600-00
Chr07	irgsp1_rep	CDS	13178190	13178293	.	-	2	Parent=Os07t0416600-00
Chr07	irgsp1_rep	CDS	13177827	13177907	.	-	0	Parent=Os07t0416600-00
Chr07	irgsp1_rep	mRNA	13180808	13182551	.	-	.	ID=Os07t0416700-00;Name=Os07t0416700-00;Locus_id=Os07g0416700;Oryzabase Gene Symbol Synonym(s)=OsFAD2-4;Oryzabase Gene Name Synonym(s)=fatty acid desaturase 2-4%2C microsomal delta-12 fatty acid desaturase2-4;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0022d10 (Wheat FLcDNA);ORF_evidence=A2YKL9 (UniProt);Oryzabase=16702;TENOR=Os07t0416700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	13181883	13182551	.	-	0	Parent=Os07t0416700-00
Chr07	irgsp1_rep	three_prime_UTR	13181726	13181882	.	-	.	Parent=Os07t0416700-00
Chr07	irgsp1_rep	three_prime_UTR	13180808	13181116	.	-	.	Parent=Os07t0416700-00
Chr07	irgsp1_rep	mRNA	13180853	13181851	.	+	.	ID=Os07t0416750-00;Name=Os07t0416750-00;Locus_id=Os07g0416750;Note=Non-protein coding transcript.;Transcript_evidence=BT016850 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0416750-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	exon	13180853	13181100	.	+	.	Parent=Os07t0416750-00
Chr07	irgsp1_rep	exon	13181750	13181851	.	+	.	Parent=Os07t0416750-00
Chr07	irgsp1_rep	mRNA	13201188	13202543	.	-	.	ID=Os07t0416900-01;Name=Os07t0416900-01;Locus_id=Os07g0416900;Oryzabase Gene Symbol Synonym(s)=OsFAD2-3%2C FAD2-3%2C OsaFAD2-2%2C FAD2-2;Oryzabase Gene Name Synonym(s)=fatty acid desaturase 2-3%2C microsomal delta-12 fatty acid desaturase2-3;Note=Similar to Omega-6 fatty acid desaturase%2C endoplasmic reticulum isozyme 2 (EC 1.14.19.-).;Transcript_evidence=AK070559 (DDBJ%2C Best hit);ORF_evidence=Q1T6Y2 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water (GO:0016717);InterPro=Fatty acid desaturase%2C type 1 (IPR005804),Protein of unknown function DUF3474 (IPR021863);NIAS_FLcDNA=J023060M02;Oryzabase=16701;Expression=AK070559;TENOR=Os07t0416900-01;KEGG=Os07t0416900-01 (EC:1.14.19.-)
Chr07	irgsp1_rep	five_prime_UTR	13202493	13202543	.	-	.	Parent=Os07t0416900-01
Chr07	irgsp1_rep	CDS	13201320	13202492	.	-	0	Parent=Os07t0416900-01
Chr07	irgsp1_rep	three_prime_UTR	13201188	13201319	.	-	.	Parent=Os07t0416900-01
Chr07	irgsp1_rep	mRNA	13223292	13224558	.	+	.	ID=Os07t0417200-01;Name=Os07t0417200-01;Locus_id=Os07g0417200;Oryzabase Gene Symbol Synonym(s)=OsFAD2-2%2C FAD2-2%2C OsaFAD2-3%2C FAD2-3;Oryzabase Gene Name Synonym(s)=fatty acid desaturase 2-2%2C microsomal delta-12 fatty acid desaturase2-2;Note=Similar to Delta 12 oleic acid desaturase FAD2.;Transcript_evidence=AK105371 (DDBJ%2C Best hit);ORF_evidence=Q1T6Y2 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water (GO:0016717);InterPro=Fatty acid desaturase%2C type 1 (IPR005804),Protein of unknown function DUF3474 (IPR021863);NIAS_FLcDNA=001-120-C08;Oryzabase=16700;Expression=AK105371;TENOR=Os07t0417200-01;KEGG=Os07t0417200-01 (EC:1.14.19.-)
Chr07	irgsp1_rep	CDS	13223292	13224440	.	+	0	Parent=Os07t0417200-01
Chr07	irgsp1_rep	three_prime_UTR	13224441	13224558	.	+	.	Parent=Os07t0417200-01
Chr07	irgsp1_rep	mRNA	13246577	13246891	.	+	.	ID=Os07t0417400-00;Name=Os07t0417400-00;Locus_id=Os07g0417400;Note=Similar to zinc finger (C2H2 type) family protein.;Transcript_evidence=AJ577365 (DDBJ);ORF_evidence=NP_199167.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880);TENOR=Os07t0417400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	13246577	13246579	.	+	.	Parent=Os07t0417400-00
Chr07	irgsp1_rep	CDS	13246580	13246891	.	+	0	Parent=Os07t0417400-00
Chr07	irgsp1_rep	mRNA	13256623	13258670	.	-	.	ID=Os07t0417600-01;Name=Os07t0417600-01;Locus_id=Os07g0417600;Note=Thaumatin%2C pathogenesis-related family protein.;Transcript_evidence=AK242887 (DDBJ%2C Best hit);ORF_evidence=O80327 (UniProt);InterPro=Thaumatin%2C pathogenesis-related (IPR001938);NIAS_FLcDNA=J090079J16;TENOR=Os07t0417600-01;KEGG=Os07t0417600-01
Chr07	irgsp1_rep	five_prime_UTR	13258625	13258670	.	-	.	Parent=Os07t0417600-01
Chr07	irgsp1_rep	CDS	13258558	13258624	.	-	0	Parent=Os07t0417600-01
Chr07	irgsp1_rep	CDS	13256719	13257401	.	-	2	Parent=Os07t0417600-01
Chr07	irgsp1_rep	three_prime_UTR	13256623	13256718	.	-	.	Parent=Os07t0417600-01
Chr07	irgsp1_rep	mRNA	13256723	13257402	.	+	.	ID=Os07t0417683-00;Name=Os07t0417683-00;Locus_id=Os07g0417683;Note=Hypothetical protein.;Transcript_evidence=EU967040 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0417683-00
Chr07	irgsp1_rep	five_prime_UTR	13256723	13256724	.	+	.	Parent=Os07t0417683-00
Chr07	irgsp1_rep	CDS	13256725	13257105	.	+	0	Parent=Os07t0417683-00
Chr07	irgsp1_rep	three_prime_UTR	13257106	13257402	.	+	.	Parent=Os07t0417683-00
Chr07	irgsp1_rep	mRNA	13272446	13275761	.	+	.	ID=Os07t0417766-01;Name=Os07t0417766-01;Locus_id=Os07g0417766;Note=Hypothetical conserved gene.;Transcript_evidence=AK288300 (DDBJ%2C Best hit);ORF_evidence=Q53MA0 (UniProt);NIAS_FLcDNA=J090020B14;TENOR=Os07t0417766-01;KEGG=Os07t0417766-01
Chr07	irgsp1_rep	five_prime_UTR	13272446	13275095	.	+	.	Parent=Os07t0417766-01
Chr07	irgsp1_rep	CDS	13275096	13275416	.	+	0	Parent=Os07t0417766-01
Chr07	irgsp1_rep	three_prime_UTR	13275417	13275761	.	+	.	Parent=Os07t0417766-01
Chr07	irgsp1_rep	mRNA	13275950	13283719	.	-	.	ID=Os07t0417800-01;Name=Os07t0417800-01;Locus_id=Os07g0417800;Note=Galactosyl transferase domain containing protein.;Transcript_evidence=AK120134 (DDBJ%2C Best hit);ORF_evidence=F2D0C6 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=Galactosyl transferase (IPR008630);NIAS_FLcDNA=J013027E07;TENOR=Os07t0417800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	13283665	13283719	.	-	.	Parent=Os07t0417800-01
Chr07	irgsp1_rep	CDS	13283167	13283664	.	-	0	Parent=Os07t0417800-01
Chr07	irgsp1_rep	CDS	13283023	13283055	.	-	0	Parent=Os07t0417800-01
Chr07	irgsp1_rep	CDS	13282749	13282839	.	-	0	Parent=Os07t0417800-01
Chr07	irgsp1_rep	CDS	13281796	13282056	.	-	2	Parent=Os07t0417800-01
Chr07	irgsp1_rep	CDS	13281168	13281268	.	-	2	Parent=Os07t0417800-01
Chr07	irgsp1_rep	three_prime_UTR	13280844	13281167	.	-	.	Parent=Os07t0417800-01
Chr07	irgsp1_rep	three_prime_UTR	13280576	13280636	.	-	.	Parent=Os07t0417800-01
Chr07	irgsp1_rep	three_prime_UTR	13280127	13280217	.	-	.	Parent=Os07t0417800-01
Chr07	irgsp1_rep	three_prime_UTR	13275950	13278418	.	-	.	Parent=Os07t0417800-01
Chr07	irgsp1_rep	mRNA	13288516	13293337	.	-	.	ID=Os07t0418000-01;Name=Os07t0418000-01;Locus_id=Os07g0418000;Note=Similar to predicted protein.;Transcript_evidence=AK105006 (DDBJ%2C Best hit),AK060294 (DDBJ%2C Best hit);ORF_evidence=B8ATY0 (UniProt);InterPro=HAD-like domain (IPR023214);NIAS_FLcDNA=001-006-D04,001-006-E03;Expression=AK105006;TENOR=Os07t0418000-01;KEGG=Os07t0418000-01
Chr07	irgsp1_rep	five_prime_UTR	13293247	13293337	.	-	.	Parent=Os07t0418000-01
Chr07	irgsp1_rep	CDS	13293166	13293246	.	-	0	Parent=Os07t0418000-01
Chr07	irgsp1_rep	CDS	13292995	13293075	.	-	0	Parent=Os07t0418000-01
Chr07	irgsp1_rep	CDS	13291304	13291393	.	-	0	Parent=Os07t0418000-01
Chr07	irgsp1_rep	CDS	13290995	13291161	.	-	0	Parent=Os07t0418000-01
Chr07	irgsp1_rep	CDS	13290226	13290295	.	-	1	Parent=Os07t0418000-01
Chr07	irgsp1_rep	CDS	13289719	13289936	.	-	0	Parent=Os07t0418000-01
Chr07	irgsp1_rep	CDS	13289179	13289356	.	-	1	Parent=Os07t0418000-01
Chr07	irgsp1_rep	three_prime_UTR	13288516	13289178	.	-	.	Parent=Os07t0418000-01
Chr07	irgsp1_rep	mRNA	13287972	13293333	.	-	.	ID=Os07t0418000-02;Name=Os07t0418000-02;Locus_id=Os07g0418000;Note=HAD-like domain domain containing protein.;Transcript_evidence=AK065942 (DDBJ%2C Best hit);ORF_evidence=B8ATY0 (UniProt);InterPro=HAD-like domain (IPR023214);NIAS_FLcDNA=J013047M02;Expression=AK065942;TENOR=Os07t0418000-02;KEGG=Os07t0418000-02
Chr07	irgsp1_rep	five_prime_UTR	13293247	13293333	.	-	.	Parent=Os07t0418000-02
Chr07	irgsp1_rep	CDS	13293166	13293246	.	-	0	Parent=Os07t0418000-02
Chr07	irgsp1_rep	CDS	13292995	13293075	.	-	0	Parent=Os07t0418000-02
Chr07	irgsp1_rep	CDS	13291304	13291393	.	-	0	Parent=Os07t0418000-02
Chr07	irgsp1_rep	CDS	13290995	13291161	.	-	0	Parent=Os07t0418000-02
Chr07	irgsp1_rep	CDS	13290226	13290295	.	-	1	Parent=Os07t0418000-02
Chr07	irgsp1_rep	CDS	13289857	13289936	.	-	0	Parent=Os07t0418000-02
Chr07	irgsp1_rep	CDS	13289719	13289781	.	-	1	Parent=Os07t0418000-02
Chr07	irgsp1_rep	CDS	13288292	13288368	.	-	1	Parent=Os07t0418000-02
Chr07	irgsp1_rep	CDS	13288110	13288210	.	-	2	Parent=Os07t0418000-02
Chr07	irgsp1_rep	three_prime_UTR	13287972	13288109	.	-	.	Parent=Os07t0418000-02
Chr07	irgsp1_rep	mRNA	13294063	13304105	.	+	.	ID=Os07t0418100-01;Name=Os07t0418100-01;Locus_id=Os07g0418100;Note=Nucleic acid-binding%2C OB-fold domain containing protein.;Transcript_evidence=AK287739 (DDBJ%2C Best hit);ORF_evidence=NP_001175163.1 (RefSeq);InterPro=Nucleic acid-binding%2C OB-fold (IPR012340),Replication factor A%2C C-terminal (IPR013955),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=J065145D02;TENOR=Os07t0418100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	13294063	13294094	.	+	.	Parent=Os07t0418100-01
Chr07	irgsp1_rep	five_prime_UTR	13294164	13294227	.	+	.	Parent=Os07t0418100-01
Chr07	irgsp1_rep	five_prime_UTR	13294315	13294443	.	+	.	Parent=Os07t0418100-01
Chr07	irgsp1_rep	five_prime_UTR	13301018	13301161	.	+	.	Parent=Os07t0418100-01
Chr07	irgsp1_rep	five_prime_UTR	13301241	13301514	.	+	.	Parent=Os07t0418100-01
Chr07	irgsp1_rep	five_prime_UTR	13301609	13301903	.	+	.	Parent=Os07t0418100-01
Chr07	irgsp1_rep	CDS	13301904	13302093	.	+	0	Parent=Os07t0418100-01
Chr07	irgsp1_rep	CDS	13302180	13302261	.	+	2	Parent=Os07t0418100-01
Chr07	irgsp1_rep	CDS	13302348	13302468	.	+	1	Parent=Os07t0418100-01
Chr07	irgsp1_rep	CDS	13302553	13302713	.	+	0	Parent=Os07t0418100-01
Chr07	irgsp1_rep	CDS	13302793	13303315	.	+	1	Parent=Os07t0418100-01
Chr07	irgsp1_rep	CDS	13303396	13303475	.	+	0	Parent=Os07t0418100-01
Chr07	irgsp1_rep	CDS	13303560	13303646	.	+	1	Parent=Os07t0418100-01
Chr07	irgsp1_rep	CDS	13303727	13303745	.	+	1	Parent=Os07t0418100-01
Chr07	irgsp1_rep	three_prime_UTR	13303746	13304105	.	+	.	Parent=Os07t0418100-01
Chr07	irgsp1_rep	mRNA	13294162	13304105	.	+	.	ID=Os07t0418100-02;Name=Os07t0418100-02;Locus_id=Os07g0418100;Note=Nucleic acid-binding%2C OB-fold domain containing protein.;Transcript_evidence=AK287637 (DDBJ%2C Best hit);ORF_evidence=NP_001175163.1 (RefSeq);InterPro=Nucleic acid-binding%2C OB-fold (IPR012340),Replication factor A%2C C-terminal (IPR013955),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=J065077F14;TENOR=Os07t0418100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	13294162	13294227	.	+	.	Parent=Os07t0418100-02
Chr07	irgsp1_rep	five_prime_UTR	13294315	13294443	.	+	.	Parent=Os07t0418100-02
Chr07	irgsp1_rep	five_prime_UTR	13301018	13301161	.	+	.	Parent=Os07t0418100-02
Chr07	irgsp1_rep	five_prime_UTR	13301241	13301514	.	+	.	Parent=Os07t0418100-02
Chr07	irgsp1_rep	five_prime_UTR	13301609	13301903	.	+	.	Parent=Os07t0418100-02
Chr07	irgsp1_rep	CDS	13301904	13302093	.	+	0	Parent=Os07t0418100-02
Chr07	irgsp1_rep	CDS	13302180	13302261	.	+	2	Parent=Os07t0418100-02
Chr07	irgsp1_rep	CDS	13302348	13302468	.	+	1	Parent=Os07t0418100-02
Chr07	irgsp1_rep	CDS	13302553	13302713	.	+	0	Parent=Os07t0418100-02
Chr07	irgsp1_rep	CDS	13302793	13303315	.	+	1	Parent=Os07t0418100-02
Chr07	irgsp1_rep	CDS	13303396	13303475	.	+	0	Parent=Os07t0418100-02
Chr07	irgsp1_rep	CDS	13303560	13303646	.	+	1	Parent=Os07t0418100-02
Chr07	irgsp1_rep	CDS	13303727	13303745	.	+	1	Parent=Os07t0418100-02
Chr07	irgsp1_rep	three_prime_UTR	13303746	13304105	.	+	.	Parent=Os07t0418100-02
Chr07	irgsp1_rep	mRNA	13309328	13311887	.	-	.	ID=Os07t0418150-01;Name=Os07t0418150-01;Locus_id=Os07g0418150;Note=Non-protein coding transcript.;Transcript_evidence=AK241208 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065122I06;TENOR=Os07t0418150-01
Chr07	irgsp1_rep	exon	13311708	13311887	.	-	.	Parent=Os07t0418150-01
Chr07	irgsp1_rep	exon	13311489	13311623	.	-	.	Parent=Os07t0418150-01
Chr07	irgsp1_rep	exon	13310996	13311116	.	-	.	Parent=Os07t0418150-01
Chr07	irgsp1_rep	exon	13310653	13310846	.	-	.	Parent=Os07t0418150-01
Chr07	irgsp1_rep	exon	13309328	13309792	.	-	.	Parent=Os07t0418150-01
Chr07	irgsp1_rep	mRNA	13313597	13316522	.	+	.	ID=Os07t0418200-01;Name=Os07t0418200-01;Locus_id=Os07g0418200;Note=Conserved hypothetical protein.;Transcript_evidence=AK062384 (DDBJ%2C Best hit);ORF_evidence=A3BIZ9 (UniProt);NIAS_FLcDNA=001-102-B12;TENOR=Os07t0418200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	13313597	13313598	.	+	.	Parent=Os07t0418200-01
Chr07	irgsp1_rep	CDS	13313599	13313723	.	+	0	Parent=Os07t0418200-01
Chr07	irgsp1_rep	CDS	13314572	13315211	.	+	1	Parent=Os07t0418200-01
Chr07	irgsp1_rep	CDS	13316186	13316302	.	+	0	Parent=Os07t0418200-01
Chr07	irgsp1_rep	three_prime_UTR	13316303	13316522	.	+	.	Parent=Os07t0418200-01
Chr07	irgsp1_rep	mRNA	13323931	13326229	.	+	.	ID=Os07t0418500-01;Name=Os07t0418500-01;Locus_id=Os07g0418500;CGSNL Gene Symbol=CYP709C9;CGSNL Gene Name=CYTOCHROME P450 709C9;Oryzabase Gene Symbol Synonym(s)=OsCYP709C9;Oryzabase Gene Name Synonym(s)=CytoChrome P450 709C9;Note=Similar to CytoChrome P450.;Transcript_evidence=AK072220 (DDBJ%2C Best hit);ORF_evidence=Q6T485 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J013166A09;Oryzabase=17787;Expression=AK072220;TENOR=Os07t0418500-01;KEGG=Os07t0418500-01
Chr07	irgsp1_rep	five_prime_UTR	13323931	13324041	.	+	.	Parent=Os07t0418500-01
Chr07	irgsp1_rep	CDS	13324042	13324324	.	+	0	Parent=Os07t0418500-01
Chr07	irgsp1_rep	CDS	13324692	13325163	.	+	2	Parent=Os07t0418500-01
Chr07	irgsp1_rep	CDS	13325259	13326063	.	+	1	Parent=Os07t0418500-01
Chr07	irgsp1_rep	three_prime_UTR	13326064	13326229	.	+	.	Parent=Os07t0418500-01
Chr07	irgsp1_rep	mRNA	13323931	13326242	.	+	.	ID=Os07t0418500-02;Name=Os07t0418500-02;Locus_id=Os07g0418500;CGSNL Gene Symbol=CYP709C9;CGSNL Gene Name=CYTOCHROME P450 709C9;Oryzabase Gene Symbol Synonym(s)=OsCYP709C9;Oryzabase Gene Name Synonym(s)=CytoChrome P450 709C9;Note=Similar to CytoChrome P450.;Transcript_evidence=AK119557 (DDBJ%2C Best hit);ORF_evidence=Q6T485 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: monooxygenase activity (GO:0004497),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group II (IPR002402);NIAS_FLcDNA=002-106-A06;Oryzabase=17787;Expression=AK119557;TENOR=Os07t0418500-02;KEGG=Os07t0418500-02
Chr07	irgsp1_rep	five_prime_UTR	13323931	13324041	.	+	.	Parent=Os07t0418500-02
Chr07	irgsp1_rep	CDS	13324042	13324324	.	+	0	Parent=Os07t0418500-02
Chr07	irgsp1_rep	CDS	13324692	13325179	.	+	2	Parent=Os07t0418500-02
Chr07	irgsp1_rep	three_prime_UTR	13325180	13326242	.	+	.	Parent=Os07t0418500-02
Chr07	irgsp1_rep	mRNA	13354235	13355291	.	-	.	ID=Os07t0418600-01;Name=Os07t0418600-01;Locus_id=Os07g0418600;RAP-DB Gene Symbol Synonym(s)=OsRePRP2.2;RAP-DB Gene Name Synonym(s)=REPETITIVE PROLINE-RICH PROTEIN 2.2;Oryzabase Gene Symbol Synonym(s)=OsRePRP2.2%2C RePRP2.2;Oryzabase Gene Name Synonym(s)=REPETITIVE PROLINE-RICH PROTEIN 2.2;Note=Proline-rich glycoprotein%2C ABA-dependent inhibition of root growth;Transcript_evidence=AK105956;ORF_evidence=Q8H5X2;NIAS_FLcDNA=001-205-D07;Manual Curation=May 20%2C 2014;Literature_PMID=23886623;Oryzabase=20517;TENOR=Os07t0418600-01
Chr07	irgsp1_rep	five_prime_UTR	13355225	13355291	.	-	.	Parent=Os07t0418600-01
Chr07	irgsp1_rep	CDS	13354481	13355224	.	-	0	Parent=Os07t0418600-01
Chr07	irgsp1_rep	three_prime_UTR	13354235	13354480	.	-	.	Parent=Os07t0418600-01
Chr07	irgsp1_rep	mRNA	13366416	13367503	.	+	.	ID=Os07t0418700-01;Name=Os07t0418700-01;Locus_id=Os07g0418700;RAP-DB Gene Symbol Synonym(s)=OsRePRP2.1;RAP-DB Gene Name Synonym(s)=REPETITIVE PROLINE-RICH PROTEIN 2.1;Oryzabase Gene Symbol Synonym(s)=OsRePRP2.1%2C RePRP2.1;Oryzabase Gene Name Synonym(s)=REPETITIVE PROLINE-RICH PROTEIN 2.1;Note=Proline-rich glycoprotein%2C ABA-dependent inhibition of root growth;Transcript_evidence=AK105945;ORF_evidence=Q8H5W8;NIAS_FLcDNA=001-205-C04;Manual Curation=May 20%2C 2014;Literature_PMID=23886623;Oryzabase=20516;TENOR=Os07t0418700-01
Chr07	irgsp1_rep	five_prime_UTR	13366416	13366482	.	+	.	Parent=Os07t0418700-01
Chr07	irgsp1_rep	CDS	13366483	13367226	.	+	0	Parent=Os07t0418700-01
Chr07	irgsp1_rep	three_prime_UTR	13367227	13367503	.	+	.	Parent=Os07t0418700-01
Chr07	irgsp1_rep	mRNA	13382831	13383316	.	-	.	ID=Os07t0419000-00;Name=Os07t0419000-00;Locus_id=Os07g0419000;Note=Similar to CytoChrome P450.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6T485 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: monooxygenase activity (GO:0004497),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group IV (IPR002403),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os07t0419000-00
Chr07	irgsp1_rep	CDS	13382831	13383316	.	-	0	Parent=Os07t0419000-00
Chr07	irgsp1_rep	mRNA	13383377	13383987	.	-	.	ID=Os07t0419100-00;Name=Os07t0419100-00;Locus_id=Os07g0419100;Note=CytoChrome P450 family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6T485 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);TENOR=Os07t0419100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	13383725	13383987	.	-	0	Parent=Os07t0419100-00
Chr07	irgsp1_rep	CDS	13383377	13383635	.	-	1	Parent=Os07t0419100-00
Chr07	irgsp1_rep	mRNA	13384934	13386043	.	+	.	ID=Os07t0419200-01;Name=Os07t0419200-01;Locus_id=Os07g0419200;Note=Similar to protein binding protein.;Transcript_evidence=AK061170 (DDBJ%2C Best hit);ORF_evidence=NP_001149339.1 (RefSeq);NIAS_FLcDNA=006-209-B05;TENOR=Os07t0419200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	13384934	13384934	.	+	.	Parent=Os07t0419200-01
Chr07	irgsp1_rep	CDS	13384935	13385891	.	+	0	Parent=Os07t0419200-01
Chr07	irgsp1_rep	three_prime_UTR	13385892	13386043	.	+	.	Parent=Os07t0419200-01
Chr07	irgsp1_rep	mRNA	13388826	13392088	.	+	.	ID=Os07t0419300-01;Name=Os07t0419300-01;Locus_id=Os07g0419300;Note=Similar to Thaumatin-like protein.;Transcript_evidence=AK069741 (DDBJ%2C Best hit);ORF_evidence=NP_001151120.1 (RefSeq);InterPro=Thaumatin%2C pathogenesis-related (IPR001938);NIAS_FLcDNA=J023026O22;Expression=AK069741;TENOR=Os07t0419300-01;KEGG=Os07t0419300-01
Chr07	irgsp1_rep	five_prime_UTR	13388826	13388859	.	+	.	Parent=Os07t0419300-01
Chr07	irgsp1_rep	CDS	13388860	13388929	.	+	0	Parent=Os07t0419300-01
Chr07	irgsp1_rep	CDS	13391142	13391902	.	+	2	Parent=Os07t0419300-01
Chr07	irgsp1_rep	three_prime_UTR	13391903	13392088	.	+	.	Parent=Os07t0419300-01
Chr07	irgsp1_rep	mRNA	13391139	13391894	.	-	.	ID=Os07t0419400-00;Name=Os07t0419400-00;Locus_id=Os07g0419400;Note=Non-protein coding transcript.;Transcript_evidence=EU967040 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0419400-00
Chr07	irgsp1_rep	exon	13391139	13391894	.	-	.	Parent=Os07t0419400-00
Chr07	irgsp1_rep	mRNA	13399139	13411985	.	+	.	ID=Os07t0419500-01;Name=Os07t0419500-01;Locus_id=Os07g0419500;Note=Similar to UDP-glucose:sterol glucosyltransferase.;Transcript_evidence=AK242062 (DDBJ%2C Best hit);ORF_evidence=O22678 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: metabolic process (GO:0008152),Biological Process: lipid glycosylation (GO:0030259),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213),Glycosyl transferase%2C family 28 (IPR004276);NIAS_FLcDNA=J075127D07;TENOR=Os07t0419500-01;KEGG=Os07t0419500-01 (EC:2.4.1.173)
Chr07	irgsp1_rep	five_prime_UTR	13399139	13399262	.	+	.	Parent=Os07t0419500-01
Chr07	irgsp1_rep	CDS	13399263	13399311	.	+	0	Parent=Os07t0419500-01
Chr07	irgsp1_rep	CDS	13400407	13400573	.	+	2	Parent=Os07t0419500-01
Chr07	irgsp1_rep	CDS	13402210	13402452	.	+	0	Parent=Os07t0419500-01
Chr07	irgsp1_rep	CDS	13405035	13405146	.	+	0	Parent=Os07t0419500-01
Chr07	irgsp1_rep	CDS	13405242	13405412	.	+	2	Parent=Os07t0419500-01
Chr07	irgsp1_rep	CDS	13405962	13406025	.	+	2	Parent=Os07t0419500-01
Chr07	irgsp1_rep	CDS	13406103	13406160	.	+	1	Parent=Os07t0419500-01
Chr07	irgsp1_rep	CDS	13406829	13407006	.	+	0	Parent=Os07t0419500-01
Chr07	irgsp1_rep	CDS	13407437	13407567	.	+	2	Parent=Os07t0419500-01
Chr07	irgsp1_rep	CDS	13409323	13409425	.	+	0	Parent=Os07t0419500-01
Chr07	irgsp1_rep	CDS	13409521	13409597	.	+	2	Parent=Os07t0419500-01
Chr07	irgsp1_rep	CDS	13410220	13410267	.	+	0	Parent=Os07t0419500-01
Chr07	irgsp1_rep	CDS	13410370	13410519	.	+	0	Parent=Os07t0419500-01
Chr07	irgsp1_rep	CDS	13411522	13411713	.	+	0	Parent=Os07t0419500-01
Chr07	irgsp1_rep	three_prime_UTR	13411714	13411985	.	+	.	Parent=Os07t0419500-01
Chr07	irgsp1_rep	mRNA	13436764	13440194	.	-	.	ID=Os07t0419800-01;Name=Os07t0419800-01;Locus_id=Os07g0419800;Oryzabase Gene Name Synonym(s)=DUF1644 family protein;Note=Hypothetical conserved gene.;Transcript_evidence=AK062104 (DDBJ%2C Best hit);ORF_evidence=A2YKM1 (UniProt);InterPro=Protein of unknown function DUF1644 (IPR012866);NIAS_FLcDNA=001-045-A12;Oryzabase=19989;Expression=AK062104;TENOR=Os07t0419800-01;KEGG=Os07t0419800-01
Chr07	irgsp1_rep	five_prime_UTR	13440013	13440194	.	-	.	Parent=Os07t0419800-01
Chr07	irgsp1_rep	five_prime_UTR	13438847	13438919	.	-	.	Parent=Os07t0419800-01
Chr07	irgsp1_rep	five_prime_UTR	13437972	13438050	.	-	.	Parent=Os07t0419800-01
Chr07	irgsp1_rep	CDS	13436964	13437971	.	-	0	Parent=Os07t0419800-01
Chr07	irgsp1_rep	three_prime_UTR	13436764	13436963	.	-	.	Parent=Os07t0419800-01
Chr07	irgsp1_rep	mRNA	13436748	13440194	.	-	.	ID=Os07t0419800-02;Name=Os07t0419800-02;Locus_id=Os07g0419800;Oryzabase Gene Name Synonym(s)=DUF1644 family protein;Note=Protein of unknown function DUF1644 family protein.;Transcript_evidence=AK066281 (DDBJ%2C Best hit);ORF_evidence=Q8LHI5 (UniProt);InterPro=Protein of unknown function DUF1644 (IPR012866);NIAS_FLcDNA=J013063L01;Oryzabase=19989;Expression=AK066281;TENOR=Os07t0419800-02;KEGG=Os07t0419800-02
Chr07	irgsp1_rep	five_prime_UTR	13440013	13440194	.	-	.	Parent=Os07t0419800-02
Chr07	irgsp1_rep	five_prime_UTR	13438897	13438919	.	-	.	Parent=Os07t0419800-02
Chr07	irgsp1_rep	CDS	13438847	13438896	.	-	0	Parent=Os07t0419800-02
Chr07	irgsp1_rep	CDS	13436964	13437711	.	-	1	Parent=Os07t0419800-02
Chr07	irgsp1_rep	three_prime_UTR	13436748	13436963	.	-	.	Parent=Os07t0419800-02
Chr07	irgsp1_rep	mRNA	13440910	13441424	.	-	.	ID=Os07t0419850-00;Name=Os07t0419850-00;Locus_id=Os07g0419850;Note=Non-protein coding transcript.;Transcript_evidence=BT087027 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0419850-00
Chr07	irgsp1_rep	exon	13440910	13441424	.	-	.	Parent=Os07t0419850-00
Chr07	irgsp1_rep	mRNA	13443292	13445654	.	+	.	ID=Os07t0420000-01;Name=Os07t0420000-01;Locus_id=Os07g0420000;Note=Conserved hypothetical protein.;Transcript_evidence=AK243123 (DDBJ%2C Best hit);ORF_evidence=B9FWW1 (UniProt);NIAS_FLcDNA=J100029A20;TENOR=Os07t0420000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	13443292	13443477	.	+	.	Parent=Os07t0420000-01
Chr07	irgsp1_rep	CDS	13443478	13443798	.	+	0	Parent=Os07t0420000-01
Chr07	irgsp1_rep	CDS	13444023	13444250	.	+	0	Parent=Os07t0420000-01
Chr07	irgsp1_rep	three_prime_UTR	13444251	13444894	.	+	.	Parent=Os07t0420000-01
Chr07	irgsp1_rep	three_prime_UTR	13445013	13445132	.	+	.	Parent=Os07t0420000-01
Chr07	irgsp1_rep	three_prime_UTR	13445243	13445291	.	+	.	Parent=Os07t0420000-01
Chr07	irgsp1_rep	three_prime_UTR	13445437	13445654	.	+	.	Parent=Os07t0420000-01
Chr07	irgsp1_rep	mRNA	13488360	13501017	.	+	.	ID=Os07t0420700-01;Name=Os07t0420700-01;Locus_id=Os07g0420700;Note=Similar to Alpha-glucosidase like protein.;Transcript_evidence=AK243062 (DDBJ%2C Best hit);ORF_evidence=B5U8Z0 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Glycoside hydrolase%2C family 31 (IPR000322),Glycoside hydrolase-type carbohydrate-binding (IPR011013),Aldolase-type TIM barrel (IPR013785),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J100014O03;TENOR=Os07t0420700-01;KEGG=Os07t0420700-01
Chr07	irgsp1_rep	five_prime_UTR	13488360	13488361	.	+	.	Parent=Os07t0420700-01
Chr07	irgsp1_rep	CDS	13488362	13488724	.	+	0	Parent=Os07t0420700-01
Chr07	irgsp1_rep	CDS	13489799	13489867	.	+	0	Parent=Os07t0420700-01
Chr07	irgsp1_rep	CDS	13489965	13490102	.	+	0	Parent=Os07t0420700-01
Chr07	irgsp1_rep	CDS	13490191	13490308	.	+	0	Parent=Os07t0420700-01
Chr07	irgsp1_rep	CDS	13490793	13490875	.	+	2	Parent=Os07t0420700-01
Chr07	irgsp1_rep	CDS	13491884	13491979	.	+	0	Parent=Os07t0420700-01
Chr07	irgsp1_rep	CDS	13492131	13492299	.	+	0	Parent=Os07t0420700-01
Chr07	irgsp1_rep	CDS	13492377	13492519	.	+	2	Parent=Os07t0420700-01
Chr07	irgsp1_rep	CDS	13492606	13492692	.	+	0	Parent=Os07t0420700-01
Chr07	irgsp1_rep	CDS	13492776	13492961	.	+	0	Parent=Os07t0420700-01
Chr07	irgsp1_rep	CDS	13493535	13493702	.	+	0	Parent=Os07t0420700-01
Chr07	irgsp1_rep	CDS	13494607	13494727	.	+	0	Parent=Os07t0420700-01
Chr07	irgsp1_rep	CDS	13495032	13495101	.	+	2	Parent=Os07t0420700-01
Chr07	irgsp1_rep	CDS	13495273	13495360	.	+	1	Parent=Os07t0420700-01
Chr07	irgsp1_rep	CDS	13495445	13495565	.	+	0	Parent=Os07t0420700-01
Chr07	irgsp1_rep	CDS	13496122	13496315	.	+	2	Parent=Os07t0420700-01
Chr07	irgsp1_rep	CDS	13496406	13496514	.	+	0	Parent=Os07t0420700-01
Chr07	irgsp1_rep	CDS	13496627	13496782	.	+	2	Parent=Os07t0420700-01
Chr07	irgsp1_rep	CDS	13497110	13497212	.	+	2	Parent=Os07t0420700-01
Chr07	irgsp1_rep	CDS	13497363	13497536	.	+	1	Parent=Os07t0420700-01
Chr07	irgsp1_rep	CDS	13500195	13500337	.	+	1	Parent=Os07t0420700-01
Chr07	irgsp1_rep	CDS	13500436	13500629	.	+	2	Parent=Os07t0420700-01
Chr07	irgsp1_rep	three_prime_UTR	13500630	13501017	.	+	.	Parent=Os07t0420700-01
Chr07	irgsp1_rep	mRNA	13513636	13515776	.	-	.	ID=Os07t0421000-01;Name=Os07t0421000-01;Locus_id=Os07g0421000;Oryzabase Gene Symbol Synonym(s)=OsFBX234%2C OsFbox369%2C Os_F0191;Oryzabase Gene Name Synonym(s)=F-box domain containing protein 234%2C F-box protein 369;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK071522 (DDBJ%2C Best hit);ORF_evidence=B8B5H2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023099N14;Oryzabase=11569;Expression=AK071522;TENOR=Os07t0421000-01;KEGG=Os07t0421000-01
Chr07	irgsp1_rep	five_prime_UTR	13515658	13515776	.	-	.	Parent=Os07t0421000-01
Chr07	irgsp1_rep	CDS	13514559	13515657	.	-	0	Parent=Os07t0421000-01
Chr07	irgsp1_rep	CDS	13513910	13513947	.	-	2	Parent=Os07t0421000-01
Chr07	irgsp1_rep	three_prime_UTR	13513636	13513909	.	-	.	Parent=Os07t0421000-01
Chr07	irgsp1_rep	mRNA	13525140	13530668	.	-	.	ID=Os07t0421200-01;Name=Os07t0421200-01;Locus_id=Os07g0421200;Note=Synaptojanin%2C N-terminal domain containing protein.;Transcript_evidence=AK068103 (DDBJ%2C Best hit);ORF_evidence=B8AJJ9 (UniProt);GO=Molecular Function: phosphoric ester hydrolase activity (GO:0042578);InterPro=Synaptojanin%2C N-terminal (IPR002013);NIAS_FLcDNA=J013129K12;TENOR=Os07t0421200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	13530148	13530668	.	-	.	Parent=Os07t0421200-01
Chr07	irgsp1_rep	five_prime_UTR	13530006	13530057	.	-	.	Parent=Os07t0421200-01
Chr07	irgsp1_rep	five_prime_UTR	13529880	13529920	.	-	.	Parent=Os07t0421200-01
Chr07	irgsp1_rep	five_prime_UTR	13529704	13529792	.	-	.	Parent=Os07t0421200-01
Chr07	irgsp1_rep	five_prime_UTR	13528913	13529064	.	-	.	Parent=Os07t0421200-01
Chr07	irgsp1_rep	five_prime_UTR	13528639	13528822	.	-	.	Parent=Os07t0421200-01
Chr07	irgsp1_rep	five_prime_UTR	13528182	13528272	.	-	.	Parent=Os07t0421200-01
Chr07	irgsp1_rep	CDS	13528051	13528181	.	-	0	Parent=Os07t0421200-01
Chr07	irgsp1_rep	CDS	13527589	13527660	.	-	1	Parent=Os07t0421200-01
Chr07	irgsp1_rep	CDS	13527470	13527503	.	-	1	Parent=Os07t0421200-01
Chr07	irgsp1_rep	three_prime_UTR	13527322	13527469	.	-	.	Parent=Os07t0421200-01
Chr07	irgsp1_rep	three_prime_UTR	13526901	13527243	.	-	.	Parent=Os07t0421200-01
Chr07	irgsp1_rep	three_prime_UTR	13526700	13526819	.	-	.	Parent=Os07t0421200-01
Chr07	irgsp1_rep	three_prime_UTR	13525579	13525790	.	-	.	Parent=Os07t0421200-01
Chr07	irgsp1_rep	three_prime_UTR	13525140	13525430	.	-	.	Parent=Os07t0421200-01
Chr07	irgsp1_rep	mRNA	13534771	13548698	.	+	.	ID=Os07t0421300-01;Name=Os07t0421300-01;Locus_id=Os07g0421300;Note=Similar to Alpha glucosidase-like protein.;Transcript_evidence=AK121014 (DDBJ%2C Best hit);ORF_evidence=B5U8Z0 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Glycoside hydrolase%2C family 31 (IPR000322),Glycoside hydrolase-type carbohydrate-binding (IPR011013),Aldolase-type TIM barrel (IPR013785),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J023048A03;Expression=AK121014;TENOR=Os07t0421300-01;KEGG=Os07t0421300-01
Chr07	irgsp1_rep	five_prime_UTR	13534771	13534827	.	+	.	Parent=Os07t0421300-01
Chr07	irgsp1_rep	CDS	13534828	13535043	.	+	0	Parent=Os07t0421300-01
Chr07	irgsp1_rep	CDS	13538899	13538967	.	+	0	Parent=Os07t0421300-01
Chr07	irgsp1_rep	CDS	13539041	13539178	.	+	0	Parent=Os07t0421300-01
Chr07	irgsp1_rep	CDS	13539264	13539381	.	+	0	Parent=Os07t0421300-01
Chr07	irgsp1_rep	CDS	13539844	13539926	.	+	2	Parent=Os07t0421300-01
Chr07	irgsp1_rep	CDS	13540500	13540592	.	+	0	Parent=Os07t0421300-01
Chr07	irgsp1_rep	CDS	13541380	13541548	.	+	0	Parent=Os07t0421300-01
Chr07	irgsp1_rep	CDS	13541635	13541777	.	+	2	Parent=Os07t0421300-01
Chr07	irgsp1_rep	CDS	13541865	13541951	.	+	0	Parent=Os07t0421300-01
Chr07	irgsp1_rep	CDS	13542027	13542212	.	+	0	Parent=Os07t0421300-01
Chr07	irgsp1_rep	CDS	13544197	13544364	.	+	0	Parent=Os07t0421300-01
Chr07	irgsp1_rep	CDS	13544778	13544898	.	+	0	Parent=Os07t0421300-01
Chr07	irgsp1_rep	CDS	13545651	13545720	.	+	2	Parent=Os07t0421300-01
Chr07	irgsp1_rep	CDS	13545968	13546055	.	+	1	Parent=Os07t0421300-01
Chr07	irgsp1_rep	CDS	13546144	13546264	.	+	0	Parent=Os07t0421300-01
Chr07	irgsp1_rep	CDS	13546543	13546736	.	+	2	Parent=Os07t0421300-01
Chr07	irgsp1_rep	CDS	13546818	13546926	.	+	0	Parent=Os07t0421300-01
Chr07	irgsp1_rep	CDS	13547067	13547222	.	+	2	Parent=Os07t0421300-01
Chr07	irgsp1_rep	CDS	13547437	13547536	.	+	2	Parent=Os07t0421300-01
Chr07	irgsp1_rep	CDS	13547694	13547867	.	+	1	Parent=Os07t0421300-01
Chr07	irgsp1_rep	CDS	13548128	13548273	.	+	1	Parent=Os07t0421300-01
Chr07	irgsp1_rep	CDS	13548375	13548568	.	+	2	Parent=Os07t0421300-01
Chr07	irgsp1_rep	three_prime_UTR	13548569	13548698	.	+	.	Parent=Os07t0421300-01
Chr07	irgsp1_rep	mRNA	13556183	13558261	.	+	.	ID=Os07t0421600-00;Name=Os07t0421600-00;Locus_id=Os07g0421600;Oryzabase Gene Symbol Synonym(s)=OsEnS-105;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 105;Note=Similar to transferase family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001148798.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);Oryzabase=18407;TENOR=Os07t0421600-00
Chr07	irgsp1_rep	CDS	13556183	13556638	.	+	0	Parent=Os07t0421600-00
Chr07	irgsp1_rep	CDS	13557308	13558261	.	+	0	Parent=Os07t0421600-00
Chr07	irgsp1_rep	mRNA	13567352	13567805	.	+	.	ID=Os07t0421800-01;Name=Os07t0421800-01;Locus_id=Os07g0421800;Note=Hypothetical conserved gene.;Transcript_evidence=AK288211 (DDBJ%2C Best hit);ORF_evidence=B9FWW8 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J090009K12;TENOR=Os07t0421800-01;KEGG=Os07t0421800-01
Chr07	irgsp1_rep	CDS	13567352	13567624	.	+	0	Parent=Os07t0421800-01
Chr07	irgsp1_rep	three_prime_UTR	13567625	13567805	.	+	.	Parent=Os07t0421800-01
Chr07	irgsp1_rep	mRNA	13589444	13592322	.	+	.	ID=Os07t0421866-00;Name=Os07t0421866-00;Locus_id=Os07g0421866;Note=Similar to tetratricopeptide repeat (TPR)-containing protein.;Transcript_evidence=BT039180 (DDBJ);ORF_evidence=NP_171639.3 (RefSeq);TENOR=Os07t0421866-00;KEGG=Os07t0421866-00
Chr07	irgsp1_rep	five_prime_UTR	13589444	13589490	.	+	.	Parent=Os07t0421866-00
Chr07	irgsp1_rep	CDS	13589491	13589551	.	+	0	Parent=Os07t0421866-00
Chr07	irgsp1_rep	CDS	13589660	13589721	.	+	2	Parent=Os07t0421866-00
Chr07	irgsp1_rep	CDS	13589997	13590089	.	+	0	Parent=Os07t0421866-00
Chr07	irgsp1_rep	CDS	13591156	13591228	.	+	0	Parent=Os07t0421866-00
Chr07	irgsp1_rep	CDS	13591455	13591844	.	+	2	Parent=Os07t0421866-00
Chr07	irgsp1_rep	CDS	13591916	13591983	.	+	2	Parent=Os07t0421866-00
Chr07	irgsp1_rep	CDS	13592101	13592322	.	+	0	Parent=Os07t0421866-00
Chr07	irgsp1_rep	mRNA	13596777	13598805	.	-	.	ID=Os07t0421932-00;Name=Os07t0421932-00;Locus_id=Os07g0421932;Note=Hypothetical gene.;Transcript_evidence=BT069793 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0421932-00;KEGG=Os07t0421932-00
Chr07	irgsp1_rep	five_prime_UTR	13598656	13598805	.	-	.	Parent=Os07t0421932-00
Chr07	irgsp1_rep	five_prime_UTR	13597533	13598042	.	-	.	Parent=Os07t0421932-00
Chr07	irgsp1_rep	five_prime_UTR	13597296	13597446	.	-	.	Parent=Os07t0421932-00
Chr07	irgsp1_rep	CDS	13597080	13597295	.	-	0	Parent=Os07t0421932-00
Chr07	irgsp1_rep	three_prime_UTR	13596995	13597079	.	-	.	Parent=Os07t0421932-00
Chr07	irgsp1_rep	three_prime_UTR	13596777	13596857	.	-	.	Parent=Os07t0421932-00
Chr07	irgsp1_rep	mRNA	13602730	13604607	.	+	.	ID=Os07t0422000-01;Name=Os07t0422000-01;Locus_id=Os07g0422000;Oryzabase Gene Symbol Synonym(s)=FLL2;Oryzabase Gene Name Synonym(s)=FLO2-LIKE2;Note=Similar to predicted protein.;Transcript_evidence=AK242040 (DDBJ%2C Best hit);ORF_evidence=NP_171639.3 (RefSeq);NIAS_FLcDNA=J075118O09;Oryzabase=19294;TENOR=Os07t0422000-01;KEGG=Os07t0422000-01
Chr07	irgsp1_rep	CDS	13602730	13602918	.	+	0	Parent=Os07t0422000-01
Chr07	irgsp1_rep	three_prime_UTR	13602919	13603065	.	+	.	Parent=Os07t0422000-01
Chr07	irgsp1_rep	three_prime_UTR	13603146	13603224	.	+	.	Parent=Os07t0422000-01
Chr07	irgsp1_rep	three_prime_UTR	13604314	13604607	.	+	.	Parent=Os07t0422000-01
Chr07	irgsp1_rep	mRNA	13607846	13608844	.	+	.	ID=Os07t0422100-01;Name=Os07t0422100-01;Locus_id=Os07g0422100;Oryzabase Gene Symbol Synonym(s)=OsPM19L2;Oryzabase Gene Name Synonym(s)=AWPM-19-like protein 2;Note=AWPM-19-like family protein.;Transcript_evidence=AK063592 (DDBJ%2C Best hit);ORF_evidence=Q9ZRF8 (UniProt);InterPro=AWPM-19-like (IPR008390);NIAS_FLcDNA=001-118-B01;Oryzabase=20288;Expression=AK063592;TENOR=Os07t0422100-01;KEGG=Os07t0422100-01
Chr07	irgsp1_rep	five_prime_UTR	13607846	13607915	.	+	.	Parent=Os07t0422100-01
Chr07	irgsp1_rep	CDS	13607916	13608042	.	+	0	Parent=Os07t0422100-01
Chr07	irgsp1_rep	CDS	13608138	13608532	.	+	2	Parent=Os07t0422100-01
Chr07	irgsp1_rep	three_prime_UTR	13608533	13608844	.	+	.	Parent=Os07t0422100-01
Chr07	irgsp1_rep	mRNA	13608001	13608532	.	-	.	ID=Os07t0422250-00;Name=Os07t0422250-00;Locus_id=Os07g0422250;Note=Hypothetical protein.;Transcript_evidence=EU951562 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0422250-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	13608391	13608532	.	-	.	Parent=Os07t0422250-00
Chr07	irgsp1_rep	CDS	13608163	13608390	.	-	0	Parent=Os07t0422250-00
Chr07	irgsp1_rep	three_prime_UTR	13608001	13608162	.	-	.	Parent=Os07t0422250-00
Chr07	irgsp1_rep	mRNA	13611075	13611539	.	-	.	ID=Os07t0422280-01;Name=Os07t0422280-01;Locus_id=Os07g0422280;RAP-DB Gene Symbol Synonym(s)=OsML2;RAP-DB Gene Name Synonym(s)=mesocotyl length 2;CGSNL Gene Symbol=ML2;CGSNL Gene Name=MESOCOTYL LENGTH 2;Oryzabase Gene Symbol Synonym(s)=OsML2;Oryzabase Gene Name Synonym(s)=mesocotyl length 2;Note=Deep-sowing tolerance;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;Manual Curation=March 22%2C 2019;Literature_PMID=29616055;Oryzabase=22413
Chr07	irgsp1_rep	CDS	13611075	13611539	.	-	0	Parent=Os07t0422280-01
Chr07	irgsp1_rep	mRNA	13640924	13642840	.	+	.	ID=Os07t0422700-00;Name=Os07t0422700-00;Locus_id=Os07g0422700;Note=Glucoamylase%2C putatuve domain containing protein.;Transcript_evidence=AK373862 (DDBJ);ORF_evidence=Q6Z3Q6 (UniProt);InterPro=Glucoamylase%2C putatuve (IPR004314);TENOR=Os07t0422700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	13640924	13641238	.	+	0	Parent=Os07t0422700-00
Chr07	irgsp1_rep	CDS	13641350	13641403	.	+	0	Parent=Os07t0422700-00
Chr07	irgsp1_rep	CDS	13641508	13641657	.	+	0	Parent=Os07t0422700-00
Chr07	irgsp1_rep	CDS	13642460	13642669	.	+	0	Parent=Os07t0422700-00
Chr07	irgsp1_rep	three_prime_UTR	13642670	13642840	.	+	.	Parent=Os07t0422700-00
Chr07	irgsp1_rep	mRNA	13654341	13655841	.	-	.	ID=Os07t0423000-01;Name=Os07t0423000-01;Locus_id=Os07g0423000;Note=Mitochodrial transcription termination factor-related family protein.;Transcript_evidence=AK109714 (DDBJ%2C Best hit);ORF_evidence=B6U9Q8 (UniProt);InterPro=Mitochodrial transcription termination factor-related (IPR003690);NIAS_FLcDNA=002-145-H07;Expression=AK109714;TENOR=Os07t0423000-01;KEGG=Os07t0423000-01
Chr07	irgsp1_rep	five_prime_UTR	13655754	13655841	.	-	.	Parent=Os07t0423000-01
Chr07	irgsp1_rep	CDS	13654527	13655753	.	-	0	Parent=Os07t0423000-01
Chr07	irgsp1_rep	three_prime_UTR	13654341	13654526	.	-	.	Parent=Os07t0423000-01
Chr07	irgsp1_rep	mRNA	13680465	13682047	.	-	.	ID=Os07t0423700-00;Name=Os07t0423700-00;Locus_id=Os07g0423700;Note=Peptidase A1 domain containing protein.;Transcript_evidence=AK374841 (DDBJ);ORF_evidence=NP_001042193.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);TENOR=Os07t0423700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	13681911	13682047	.	-	.	Parent=Os07t0423700-00
Chr07	irgsp1_rep	CDS	13681519	13681910	.	-	0	Parent=Os07t0423700-00
Chr07	irgsp1_rep	CDS	13680465	13681086	.	-	1	Parent=Os07t0423700-00
Chr07	irgsp1_rep	mRNA	13741553	13747205	.	-	.	ID=Os07t0424400-01;Name=Os07t0424400-01;Locus_id=Os07g0424400;CGSNL Gene Symbol=CESA3;CGSNL Gene Name=CELLULOSE SYNTHASE A3;Oryzabase Gene Symbol Synonym(s)=OsCesA3%2C OsCESA3%2C OS_CESA03;Oryzabase Gene Name Synonym(s)=Cellulose synthase A catalytic subunit 3 [UDP-forming]%2C Cellulose synthase A catalytic subunit 3;Note=Similar to Cellulose synthase-7.;Transcript_evidence=AK073561 (DDBJ%2C Best hit);ORF_evidence=B7F6W2 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Zinc finger%2C RING-type (IPR001841),Cellulose synthase (IPR005150),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J033042D15;Oryzabase=9055;TENOR=Os07t0424400-01
Chr07	irgsp1_rep	five_prime_UTR	13746871	13747205	.	-	.	Parent=Os07t0424400-01
Chr07	irgsp1_rep	CDS	13746790	13746870	.	-	0	Parent=Os07t0424400-01
Chr07	irgsp1_rep	CDS	13746496	13746692	.	-	0	Parent=Os07t0424400-01
Chr07	irgsp1_rep	CDS	13746178	13746388	.	-	1	Parent=Os07t0424400-01
Chr07	irgsp1_rep	CDS	13745984	13746086	.	-	0	Parent=Os07t0424400-01
Chr07	irgsp1_rep	CDS	13745727	13745901	.	-	2	Parent=Os07t0424400-01
Chr07	irgsp1_rep	CDS	13745111	13745377	.	-	1	Parent=Os07t0424400-01
Chr07	irgsp1_rep	CDS	13744688	13745033	.	-	1	Parent=Os07t0424400-01
Chr07	irgsp1_rep	CDS	13744470	13744607	.	-	0	Parent=Os07t0424400-01
Chr07	irgsp1_rep	CDS	13744228	13744353	.	-	0	Parent=Os07t0424400-01
Chr07	irgsp1_rep	CDS	13743911	13744123	.	-	0	Parent=Os07t0424400-01
Chr07	irgsp1_rep	CDS	13743533	13743824	.	-	0	Parent=Os07t0424400-01
Chr07	irgsp1_rep	CDS	13743244	13743440	.	-	2	Parent=Os07t0424400-01
Chr07	irgsp1_rep	CDS	13742812	13743162	.	-	0	Parent=Os07t0424400-01
Chr07	irgsp1_rep	CDS	13742141	13742725	.	-	0	Parent=Os07t0424400-01
Chr07	irgsp1_rep	three_prime_UTR	13741553	13742140	.	-	.	Parent=Os07t0424400-01
Chr07	irgsp1_rep	mRNA	13742837	13747126	.	-	.	ID=Os07t0424400-02;Name=Os07t0424400-02;Locus_id=Os07g0424400;CGSNL Gene Symbol=CESA3;CGSNL Gene Name=CELLULOSE SYNTHASE A3;Oryzabase Gene Symbol Synonym(s)=OsCesA3%2C OsCESA3%2C OS_CESA03;Oryzabase Gene Name Synonym(s)=Cellulose synthase A catalytic subunit 3 [UDP-forming]%2C Cellulose synthase A catalytic subunit 3;Note=Similar to cDNA clone:J023086F23%2C full insert sequence.;Transcript_evidence=AK120236 (DDBJ%2C Best hit);ORF_evidence=B7F6W2 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Zinc finger%2C RING-type (IPR001841),Cellulose synthase (IPR005150),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J013043M21;Oryzabase=9055;TENOR=Os07t0424400-02
Chr07	irgsp1_rep	five_prime_UTR	13746871	13747126	.	-	.	Parent=Os07t0424400-02
Chr07	irgsp1_rep	CDS	13746790	13746870	.	-	0	Parent=Os07t0424400-02
Chr07	irgsp1_rep	CDS	13746496	13746692	.	-	0	Parent=Os07t0424400-02
Chr07	irgsp1_rep	CDS	13746178	13746388	.	-	1	Parent=Os07t0424400-02
Chr07	irgsp1_rep	CDS	13745984	13746086	.	-	0	Parent=Os07t0424400-02
Chr07	irgsp1_rep	CDS	13745727	13745901	.	-	2	Parent=Os07t0424400-02
Chr07	irgsp1_rep	CDS	13745111	13745377	.	-	1	Parent=Os07t0424400-02
Chr07	irgsp1_rep	CDS	13744688	13745033	.	-	1	Parent=Os07t0424400-02
Chr07	irgsp1_rep	CDS	13744470	13744607	.	-	0	Parent=Os07t0424400-02
Chr07	irgsp1_rep	CDS	13744228	13744353	.	-	0	Parent=Os07t0424400-02
Chr07	irgsp1_rep	CDS	13743911	13744123	.	-	0	Parent=Os07t0424400-02
Chr07	irgsp1_rep	CDS	13743533	13743824	.	-	0	Parent=Os07t0424400-02
Chr07	irgsp1_rep	CDS	13743244	13743440	.	-	2	Parent=Os07t0424400-02
Chr07	irgsp1_rep	CDS	13742837	13743162	.	-	0	Parent=Os07t0424400-02
Chr07	irgsp1_rep	mRNA	13741551	13745632	.	-	.	ID=Os07t0424400-03;Name=Os07t0424400-03;Locus_id=Os07g0424400;CGSNL Gene Symbol=CESA3;CGSNL Gene Name=CELLULOSE SYNTHASE A3;Oryzabase Gene Symbol Synonym(s)=OsCesA3%2C OsCESA3%2C OS_CESA03;Oryzabase Gene Name Synonym(s)=Cellulose synthase A catalytic subunit 3 [UDP-forming]%2C Cellulose synthase A catalytic subunit 3;Note=Similar to cDNA clone:J023086F23%2C full insert sequence.;Transcript_evidence=AK067386 (DDBJ%2C Best hit);ORF_evidence=B7F6W2 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150);NIAS_FLcDNA=J013099F14;Oryzabase=9055;Expression=AK067386;TENOR=Os07t0424400-03;KEGG=Os07t0424400-03 (EC:2.4.1.12)
Chr07	irgsp1_rep	five_prime_UTR	13745518	13745632	.	-	.	Parent=Os07t0424400-03
Chr07	irgsp1_rep	five_prime_UTR	13745377	13745377	.	-	.	Parent=Os07t0424400-03
Chr07	irgsp1_rep	CDS	13745111	13745376	.	-	0	Parent=Os07t0424400-03
Chr07	irgsp1_rep	CDS	13744688	13745033	.	-	1	Parent=Os07t0424400-03
Chr07	irgsp1_rep	CDS	13744470	13744607	.	-	0	Parent=Os07t0424400-03
Chr07	irgsp1_rep	CDS	13744228	13744353	.	-	0	Parent=Os07t0424400-03
Chr07	irgsp1_rep	CDS	13743911	13744123	.	-	0	Parent=Os07t0424400-03
Chr07	irgsp1_rep	CDS	13743533	13743824	.	-	0	Parent=Os07t0424400-03
Chr07	irgsp1_rep	CDS	13743244	13743440	.	-	2	Parent=Os07t0424400-03
Chr07	irgsp1_rep	CDS	13742812	13743162	.	-	0	Parent=Os07t0424400-03
Chr07	irgsp1_rep	CDS	13742141	13742725	.	-	0	Parent=Os07t0424400-03
Chr07	irgsp1_rep	three_prime_UTR	13741551	13742140	.	-	.	Parent=Os07t0424400-03
Chr07	irgsp1_rep	mRNA	13741616	13743741	.	-	.	ID=Os07t0424400-04;Name=Os07t0424400-04;Locus_id=Os07g0424400;CGSNL Gene Symbol=CESA3;CGSNL Gene Name=CELLULOSE SYNTHASE A3;Oryzabase Gene Symbol Synonym(s)=OsCesA3%2C OsCESA3%2C OS_CESA03;Oryzabase Gene Name Synonym(s)=Cellulose synthase A catalytic subunit 3 [UDP-forming]%2C Cellulose synthase A catalytic subunit 3;Note=Similar to cDNA clone:J023086F23%2C full insert sequence.;Transcript_evidence=AK071976 (DDBJ%2C Best hit);ORF_evidence=B7F6W2 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150);NIAS_FLcDNA=J013085H01;Oryzabase=9055;Expression=AK071976;TENOR=Os07t0424400-04;KEGG=Os07t0424400-04 (EC:2.4.1.12)
Chr07	irgsp1_rep	five_prime_UTR	13743741	13743741	.	-	.	Parent=Os07t0424400-04
Chr07	irgsp1_rep	CDS	13743533	13743740	.	-	0	Parent=Os07t0424400-04
Chr07	irgsp1_rep	CDS	13743244	13743440	.	-	2	Parent=Os07t0424400-04
Chr07	irgsp1_rep	CDS	13742812	13743162	.	-	0	Parent=Os07t0424400-04
Chr07	irgsp1_rep	CDS	13742141	13742725	.	-	0	Parent=Os07t0424400-04
Chr07	irgsp1_rep	three_prime_UTR	13741616	13742140	.	-	.	Parent=Os07t0424400-04
Chr07	irgsp1_rep	mRNA	13741551	13743637	.	-	.	ID=Os07t0424400-05;Name=Os07t0424400-05;Locus_id=Os07g0424400;CGSNL Gene Symbol=CESA3;CGSNL Gene Name=CELLULOSE SYNTHASE A3;Oryzabase Gene Symbol Synonym(s)=OsCesA3%2C OsCESA3%2C OS_CESA03;Oryzabase Gene Name Synonym(s)=Cellulose synthase A catalytic subunit 3 [UDP-forming]%2C Cellulose synthase A catalytic subunit 3;Note=Similar to cDNA clone:J023086F23%2C full insert sequence.;Transcript_evidence=AK062154 (DDBJ%2C Best hit);ORF_evidence=B7F6W2 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150);NIAS_FLcDNA=001-045-H11;Oryzabase=9055;Expression=AK062154;TENOR=Os07t0424400-05;KEGG=Os07t0424400-05 (EC:2.4.1.12)
Chr07	irgsp1_rep	five_prime_UTR	13743636	13743637	.	-	.	Parent=Os07t0424400-05
Chr07	irgsp1_rep	CDS	13743533	13743635	.	-	0	Parent=Os07t0424400-05
Chr07	irgsp1_rep	CDS	13743244	13743440	.	-	2	Parent=Os07t0424400-05
Chr07	irgsp1_rep	CDS	13742812	13743162	.	-	0	Parent=Os07t0424400-05
Chr07	irgsp1_rep	CDS	13742141	13742725	.	-	0	Parent=Os07t0424400-05
Chr07	irgsp1_rep	three_prime_UTR	13741551	13742140	.	-	.	Parent=Os07t0424400-05
Chr07	irgsp1_rep	mRNA	13741553	13747126	.	-	.	ID=Os07t0424400-06;Name=Os07t0424400-06;Locus_id=Os07g0424400;CGSNL Gene Symbol=CESA3;CGSNL Gene Name=CELLULOSE SYNTHASE A3;Oryzabase Gene Symbol Synonym(s)=OsCesA3%2C OsCESA3%2C OS_CESA03;Oryzabase Gene Name Synonym(s)=Cellulose synthase A catalytic subunit 3 [UDP-forming]%2C Cellulose synthase A catalytic subunit 3;Note=Similar to Cellulose synthase-7.;Transcript_evidence=AK121193 (DDBJ%2C Best hit);ORF_evidence=NP_001104957.1 (RefSeq);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Zinc finger%2C RING-type (IPR001841),Cellulose synthase (IPR005150),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J023086F23;Oryzabase=9055;TENOR=Os07t0424400-06
Chr07	irgsp1_rep	five_prime_UTR	13746871	13747126	.	-	.	Parent=Os07t0424400-06
Chr07	irgsp1_rep	CDS	13746790	13746870	.	-	0	Parent=Os07t0424400-06
Chr07	irgsp1_rep	CDS	13746496	13746692	.	-	0	Parent=Os07t0424400-06
Chr07	irgsp1_rep	CDS	13746178	13746388	.	-	1	Parent=Os07t0424400-06
Chr07	irgsp1_rep	CDS	13745984	13746086	.	-	0	Parent=Os07t0424400-06
Chr07	irgsp1_rep	CDS	13745727	13745901	.	-	2	Parent=Os07t0424400-06
Chr07	irgsp1_rep	CDS	13745111	13745377	.	-	1	Parent=Os07t0424400-06
Chr07	irgsp1_rep	CDS	13744688	13745033	.	-	1	Parent=Os07t0424400-06
Chr07	irgsp1_rep	CDS	13744470	13744607	.	-	0	Parent=Os07t0424400-06
Chr07	irgsp1_rep	CDS	13744228	13744353	.	-	0	Parent=Os07t0424400-06
Chr07	irgsp1_rep	CDS	13743911	13744123	.	-	0	Parent=Os07t0424400-06
Chr07	irgsp1_rep	CDS	13743533	13743824	.	-	0	Parent=Os07t0424400-06
Chr07	irgsp1_rep	CDS	13743244	13743440	.	-	2	Parent=Os07t0424400-06
Chr07	irgsp1_rep	CDS	13742812	13743162	.	-	0	Parent=Os07t0424400-06
Chr07	irgsp1_rep	CDS	13742141	13742725	.	-	0	Parent=Os07t0424400-06
Chr07	irgsp1_rep	three_prime_UTR	13741553	13742140	.	-	.	Parent=Os07t0424400-06
Chr07	irgsp1_rep	mRNA	13776950	13778155	.	-	.	ID=Os07t0425000-01;Name=Os07t0425000-01;Locus_id=Os07g0425000;Note=Biopterin transport-related protein BT1 family protein.;Transcript_evidence=AK108531 (DDBJ%2C Best hit);ORF_evidence=NP_001151276.1 (RefSeq);InterPro=Biopterin transport-related protein BT1 (IPR004324),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=002-144-C03;Expression=AK108531;TENOR=Os07t0425000-01;KEGG=Os07t0425000-01
Chr07	irgsp1_rep	five_prime_UTR	13778154	13778155	.	-	.	Parent=Os07t0425000-01
Chr07	irgsp1_rep	CDS	13777176	13778153	.	-	0	Parent=Os07t0425000-01
Chr07	irgsp1_rep	three_prime_UTR	13776950	13777175	.	-	.	Parent=Os07t0425000-01
Chr07	irgsp1_rep	mRNA	14106592	14108414	.	+	.	ID=Os07t0429600-00;Name=Os07t0429600-00;Locus_id=Os07g0429600;Oryzabase Gene Name Synonym(s)=thionin like peptide;Note=Similar to Thionin-like peptide.;Transcript_evidence=AK243236 (DDBJ%2C Secondary hit);ORF_evidence=Q5BQ30 (UniProt);Oryzabase=19279;TENOR=Os07t0429600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	14106592	14106654	.	+	.	Parent=Os07t0429600-00
Chr07	irgsp1_rep	CDS	14106655	14106859	.	+	0	Parent=Os07t0429600-00
Chr07	irgsp1_rep	CDS	14107103	14107184	.	+	2	Parent=Os07t0429600-00
Chr07	irgsp1_rep	CDS	14108195	14108195	.	+	1	Parent=Os07t0429600-00
Chr07	irgsp1_rep	three_prime_UTR	14108196	14108414	.	+	.	Parent=Os07t0429600-00
Chr07	irgsp1_rep	mRNA	14118026	14118911	.	+	.	ID=Os07t0429700-01;Name=Os07t0429700-01;Locus_id=Os07g0429700;Oryzabase Gene Name Synonym(s)=thionin like peptide;Note=Similar to Thionin-like peptide.;Transcript_evidence=AK240977 (DDBJ%2C Best hit);ORF_evidence=Q5BQ30 (UniProt);NIAS_FLcDNA=J065048H23;Oryzabase=19280;TENOR=Os07t0429700-01;KEGG=Os07t0429700-01
Chr07	irgsp1_rep	five_prime_UTR	14118026	14118093	.	+	.	Parent=Os07t0429700-01
Chr07	irgsp1_rep	CDS	14118094	14118298	.	+	0	Parent=Os07t0429700-01
Chr07	irgsp1_rep	CDS	14118541	14118623	.	+	2	Parent=Os07t0429700-01
Chr07	irgsp1_rep	three_prime_UTR	14118624	14118911	.	+	.	Parent=Os07t0429700-01
Chr07	irgsp1_rep	mRNA	14178445	14179257	.	+	.	ID=Os07t0430501-00;Name=Os07t0430501-00;Locus_id=Os07g0430501;Note=Similar to Thionin-like peptide.;Transcript_evidence=AK243236 (DDBJ%2C Secondary hit);ORF_evidence=Q5BQ30 (UniProt);TENOR=Os07t0430501-00;KEGG=Os07t0430501-00
Chr07	irgsp1_rep	five_prime_UTR	14178445	14178618	.	+	.	Parent=Os07t0430501-00
Chr07	irgsp1_rep	CDS	14178619	14178712	.	+	0	Parent=Os07t0430501-00
Chr07	irgsp1_rep	CDS	14178956	14179038	.	+	2	Parent=Os07t0430501-00
Chr07	irgsp1_rep	three_prime_UTR	14179039	14179257	.	+	.	Parent=Os07t0430501-00
Chr07	irgsp1_rep	mRNA	14189740	14201825	.	+	.	ID=Os07t0431160-00;Name=Os07t0431160-00;Locus_id=Os07g0431160;Note=Similar to Thionin-like peptide.;Transcript_evidence=AK240977 (DDBJ%2C Secondary hit);ORF_evidence=Q5BQ30 (UniProt);TENOR=Os07t0431160-00;KEGG=Os07t0431160-00
Chr07	irgsp1_rep	five_prime_UTR	14189740	14189807	.	+	.	Parent=Os07t0431160-00
Chr07	irgsp1_rep	CDS	14189808	14189907	.	+	0	Parent=Os07t0431160-00
Chr07	irgsp1_rep	CDS	14201130	14201231	.	+	2	Parent=Os07t0431160-00
Chr07	irgsp1_rep	CDS	14201289	14201310	.	+	2	Parent=Os07t0431160-00
Chr07	irgsp1_rep	CDS	14201475	14201568	.	+	1	Parent=Os07t0431160-00
Chr07	irgsp1_rep	three_prime_UTR	14201569	14201825	.	+	.	Parent=Os07t0431160-00
Chr07	irgsp1_rep	mRNA	14292055	14293934	.	-	.	ID=Os07t0432100-00;Name=Os07t0432100-00;Locus_id=Os07g0432100;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001175167.1 (RefSeq);TENOR=Os07t0432100-00;KEGG=Os07t0432100-00
Chr07	irgsp1_rep	CDS	14293827	14293934	.	-	0	Parent=Os07t0432100-00
Chr07	irgsp1_rep	CDS	14292244	14292384	.	-	0	Parent=Os07t0432100-00
Chr07	irgsp1_rep	CDS	14292055	14292120	.	-	0	Parent=Os07t0432100-00
Chr07	irgsp1_rep	mRNA	14292161	14292961	.	+	.	ID=Os07t0432201-01;Name=Os07t0432201-01;Locus_id=Os07g0432201;Oryzabase Gene Name Synonym(s)=thionin like peptide;Note=Similar to Thionin-like peptide.;Transcript_evidence=AK243236 (DDBJ%2C Best hit);ORF_evidence=Q5BQ30 (UniProt);NIAS_FLcDNA=J100045I04;Oryzabase=19281;TENOR=Os07t0432201-01;KEGG=Os07t0432201-01
Chr07	irgsp1_rep	five_prime_UTR	14292161	14292223	.	+	.	Parent=Os07t0432201-01
Chr07	irgsp1_rep	CDS	14292224	14292428	.	+	0	Parent=Os07t0432201-01
Chr07	irgsp1_rep	CDS	14292660	14292742	.	+	2	Parent=Os07t0432201-01
Chr07	irgsp1_rep	three_prime_UTR	14292743	14292961	.	+	.	Parent=Os07t0432201-01
Chr07	irgsp1_rep	mRNA	14303299	14304162	.	+	.	ID=Os07t0432333-01;Name=Os07t0432333-01;Locus_id=Os07g0432333;Oryzabase Gene Name Synonym(s)=thionin like peptide;Note=Similar to Thionin-like peptide.;Transcript_evidence=AK289221 (DDBJ%2C Best hit),AK243039 (DDBJ%2C Best hit);ORF_evidence=Q5BQ30 (UniProt);NIAS_FLcDNA=J100067B06,J100007M12;Oryzabase=19282;TENOR=Os07t0432333-01;KEGG=Os07t0432333-01
Chr07	irgsp1_rep	five_prime_UTR	14303299	14303366	.	+	.	Parent=Os07t0432333-01
Chr07	irgsp1_rep	CDS	14303367	14303571	.	+	0	Parent=Os07t0432333-01
Chr07	irgsp1_rep	CDS	14303819	14303874	.	+	2	Parent=Os07t0432333-01
Chr07	irgsp1_rep	three_prime_UTR	14303875	14304162	.	+	.	Parent=Os07t0432333-01
Chr07	irgsp1_rep	mRNA	14318733	14319012	.	-	.	ID=Os07t0432566-00;Name=Os07t0432566-00;Locus_id=Os07g0432566;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FWX4 (UniProt);TENOR=Os07t0432566-00;KEGG=Os07t0432566-00
Chr07	irgsp1_rep	CDS	14318939	14319012	.	-	0	Parent=Os07t0432566-00
Chr07	irgsp1_rep	CDS	14318733	14318898	.	-	1	Parent=Os07t0432566-00
Chr07	irgsp1_rep	mRNA	14368433	14371039	.	-	.	ID=Os07t0432800-01;Name=Os07t0432800-01;Locus_id=Os07g0432800;Note=Similar to Typical P-type R2R3 Myb protein (Fragment).;Transcript_evidence=AK063456 (DDBJ%2C Best hit);ORF_evidence=Q8S3Y1 (UniProt);NIAS_FLcDNA=001-115-G07;TENOR=Os07t0432800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	14370998	14371039	.	-	.	Parent=Os07t0432800-01
Chr07	irgsp1_rep	CDS	14370611	14370997	.	-	0	Parent=Os07t0432800-01
Chr07	irgsp1_rep	three_prime_UTR	14370515	14370610	.	-	.	Parent=Os07t0432800-01
Chr07	irgsp1_rep	three_prime_UTR	14370295	14370424	.	-	.	Parent=Os07t0432800-01
Chr07	irgsp1_rep	three_prime_UTR	14370040	14370138	.	-	.	Parent=Os07t0432800-01
Chr07	irgsp1_rep	three_prime_UTR	14369895	14369910	.	-	.	Parent=Os07t0432800-01
Chr07	irgsp1_rep	three_prime_UTR	14368433	14369804	.	-	.	Parent=Os07t0432800-01
Chr07	irgsp1_rep	mRNA	14485762	14489280	.	+	.	ID=Os07t0434100-01;Name=Os07t0434100-01;Locus_id=Os07g0434100;Note=Hypothetical gene.;Transcript_evidence=AK070532 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023062M02;Expression=AK070532;TENOR=Os07t0434100-01;KEGG=Os07t0434100-01
Chr07	irgsp1_rep	five_prime_UTR	14485762	14486176	.	+	.	Parent=Os07t0434100-01
Chr07	irgsp1_rep	CDS	14486177	14486389	.	+	0	Parent=Os07t0434100-01
Chr07	irgsp1_rep	three_prime_UTR	14486390	14489280	.	+	.	Parent=Os07t0434100-01
Chr07	irgsp1_rep	mRNA	14491561	14492118	.	-	.	ID=Os07t0434125-00;Name=Os07t0434125-00;Locus_id=Os07g0434125;Note=Similar to Myb-like DNA-binding domain containing protein.;Transcript_evidence=AJ601378 (DDBJ);ORF_evidence=Q10MG5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);TENOR=Os07t0434125-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	14491561	14492118	.	-	0	Parent=Os07t0434125-00
Chr07	irgsp1_rep	mRNA	14491580	14492168	.	+	.	ID=Os07t0434183-00;Name=Os07t0434183-00;Locus_id=Os07g0434183;Note=Non-protein coding transcript.;Transcript_evidence=AK364776 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0434183-00
Chr07	irgsp1_rep	exon	14491580	14492168	.	+	.	Parent=Os07t0434183-00
Chr07	irgsp1_rep	mRNA	14502054	14502650	.	-	.	ID=Os07t0434300-00;Name=Os07t0434300-00;Locus_id=Os07g0434300;Note=Similar to Myb-like DNA-binding domain containing protein.;Transcript_evidence=AJ601378 (DDBJ);ORF_evidence=Q10MG5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),MYB-like (IPR017877),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);TENOR=Os07t0434300-00
Chr07	irgsp1_rep	CDS	14502054	14502650	.	-	0	Parent=Os07t0434300-00
Chr07	irgsp1_rep	mRNA	14506007	14510037	.	-	.	ID=Os07t0434500-01;Name=Os07t0434500-01;Locus_id=Os07g0434500;Oryzabase Gene Name Synonym(s)=DRD1 protein;Note=Similar to Chromatin remodeling complex subunit.;Transcript_evidence=AK241408 (DDBJ%2C Best hit);ORF_evidence=XP_002305447.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524);InterPro=SNF2-related (IPR000330),Helicase%2C C-terminal (IPR001650),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J065159I10;Oryzabase=21901;TENOR=Os07t0434500-01;KEGG=Os07t0434500-01
Chr07	irgsp1_rep	five_prime_UTR	14509975	14510037	.	-	.	Parent=Os07t0434500-01
Chr07	irgsp1_rep	CDS	14509888	14509974	.	-	0	Parent=Os07t0434500-01
Chr07	irgsp1_rep	CDS	14509387	14509557	.	-	0	Parent=Os07t0434500-01
Chr07	irgsp1_rep	CDS	14506522	14508278	.	-	0	Parent=Os07t0434500-01
Chr07	irgsp1_rep	CDS	14506435	14506438	.	-	1	Parent=Os07t0434500-01
Chr07	irgsp1_rep	three_prime_UTR	14506362	14506434	.	-	.	Parent=Os07t0434500-01
Chr07	irgsp1_rep	three_prime_UTR	14506007	14506245	.	-	.	Parent=Os07t0434500-01
Chr07	irgsp1_rep	mRNA	14520218	14524575	.	-	.	ID=Os07t0434700-01;Name=Os07t0434700-01;Locus_id=Os07g0434700;Note=Peptidase M24%2C methionine aminopeptidase family protein.;Transcript_evidence=AK068716 (DDBJ%2C Best hit);ORF_evidence=B4FNU5 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: cellular process (GO:0009987),Molecular Function: aminopeptidase activity (GO:0004177),Molecular Function: metalloexopeptidase activity (GO:0008235);InterPro=Peptidase M24%2C structural domain (IPR000994),Peptidase M24%2C methionine aminopeptidase (IPR001714);NIAS_FLcDNA=J013163C09;Expression=AK068716;TENOR=Os07t0434700-01;KEGG=Os07t0434700-01 (EC:3.4.11.18)
Chr07	irgsp1_rep	five_prime_UTR	14522553	14524575	.	-	.	Parent=Os07t0434700-01
Chr07	irgsp1_rep	five_prime_UTR	14522456	14522467	.	-	.	Parent=Os07t0434700-01
Chr07	irgsp1_rep	CDS	14522210	14522455	.	-	0	Parent=Os07t0434700-01
Chr07	irgsp1_rep	CDS	14521912	14522073	.	-	0	Parent=Os07t0434700-01
Chr07	irgsp1_rep	CDS	14521767	14521808	.	-	0	Parent=Os07t0434700-01
Chr07	irgsp1_rep	CDS	14521484	14521561	.	-	0	Parent=Os07t0434700-01
Chr07	irgsp1_rep	three_prime_UTR	14520878	14521483	.	-	.	Parent=Os07t0434700-01
Chr07	irgsp1_rep	three_prime_UTR	14520729	14520776	.	-	.	Parent=Os07t0434700-01
Chr07	irgsp1_rep	three_prime_UTR	14520218	14520660	.	-	.	Parent=Os07t0434700-01
Chr07	irgsp1_rep	mRNA	14520249	14522455	.	-	.	ID=Os07t0434700-02;Name=Os07t0434700-02;Locus_id=Os07g0434700;Note=Peptidase M24 family protein.;Transcript_evidence=AK059240 (DDBJ%2C Best hit);ORF_evidence=B9FWX9 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: cellular process (GO:0009987),Molecular Function: aminopeptidase activity (GO:0004177),Molecular Function: metalloexopeptidase activity (GO:0008235);InterPro=Peptidase M24%2C structural domain (IPR000994),Peptidase M24%2C methionine aminopeptidase (IPR001714);NIAS_FLcDNA=001-024-F07;Expression=AK059240;TENOR=Os07t0434700-02;KEGG=Os07t0434700-02 (EC:3.4.11.18)
Chr07	irgsp1_rep	five_prime_UTR	14522270	14522455	.	-	.	Parent=Os07t0434700-02
Chr07	irgsp1_rep	CDS	14522210	14522269	.	-	0	Parent=Os07t0434700-02
Chr07	irgsp1_rep	CDS	14521912	14522073	.	-	0	Parent=Os07t0434700-02
Chr07	irgsp1_rep	CDS	14521767	14521808	.	-	0	Parent=Os07t0434700-02
Chr07	irgsp1_rep	CDS	14521490	14521561	.	-	0	Parent=Os07t0434700-02
Chr07	irgsp1_rep	CDS	14521330	14521374	.	-	0	Parent=Os07t0434700-02
Chr07	irgsp1_rep	three_prime_UTR	14521329	14521329	.	-	.	Parent=Os07t0434700-02
Chr07	irgsp1_rep	three_prime_UTR	14520933	14520972	.	-	.	Parent=Os07t0434700-02
Chr07	irgsp1_rep	three_prime_UTR	14520725	14520746	.	-	.	Parent=Os07t0434700-02
Chr07	irgsp1_rep	three_prime_UTR	14520249	14520660	.	-	.	Parent=Os07t0434700-02
Chr07	irgsp1_rep	mRNA	14527450	14530522	.	-	.	ID=Os07t0435100-01;Name=Os07t0435100-01;Locus_id=Os07g0435100;CGSNL Gene Symbol=RPN12;CGSNL Gene Name=19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 12;Oryzabase Gene Symbol Synonym(s)=OsRpn12%2C Rpn12;Oryzabase Gene Name Synonym(s)=19S regulatory particle non-ATPase subunit 12%2C RP non-ATPase 12;Note=Similar to 26S proteasome subunit RPN12.;Transcript_evidence=AK061383 (DDBJ%2C Best hit),AK061408 (DDBJ%2C Best hit),AK101316 (DDBJ%2C Best hit);ORF_evidence=NP_001148851.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Cellular Component: proteasome regulatory particle (GO:0005838);InterPro=SAC3/GANP/Nin1/mts3/eIF-3 p25 (IPR005062),26S proteasome non-ATPase regulatory subunit Rpn12 (IPR006746);NIAS_FLcDNA=006-304-H08,006-306-A10,J033034D03;Oryzabase=20571;TENOR=Os07t0435100-01
Chr07	irgsp1_rep	five_prime_UTR	14530432	14530522	.	-	.	Parent=Os07t0435100-01
Chr07	irgsp1_rep	CDS	14530327	14530431	.	-	0	Parent=Os07t0435100-01
Chr07	irgsp1_rep	CDS	14529779	14529857	.	-	0	Parent=Os07t0435100-01
Chr07	irgsp1_rep	CDS	14528940	14529042	.	-	2	Parent=Os07t0435100-01
Chr07	irgsp1_rep	CDS	14528228	14528491	.	-	1	Parent=Os07t0435100-01
Chr07	irgsp1_rep	CDS	14528008	14528119	.	-	1	Parent=Os07t0435100-01
Chr07	irgsp1_rep	CDS	14527785	14527925	.	-	0	Parent=Os07t0435100-01
Chr07	irgsp1_rep	three_prime_UTR	14527450	14527784	.	-	.	Parent=Os07t0435100-01
Chr07	irgsp1_rep	mRNA	14533317	14534258	.	+	.	ID=Os07t0435300-01;Name=Os07t0435300-01;Locus_id=Os07g0435300;CGSNL Gene Symbol=PSAE;CGSNL Gene Name=PHOTOSYSTEM I SUBUNIT;Oryzabase Gene Symbol Synonym(s)=PsaE%2C OsPsaE;Oryzabase Gene Name Synonym(s)=PSI subunit PsaE%2C photosystem I subunit PsaE;Note=Photosystem I reaction center subunit IV%2C chloroplast precursor (PSI- E) (Photosystem I 10.8 kDa polypeptide).;Transcript_evidence=AK120598 (DDBJ%2C Best hit);ORF_evidence=P13194 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem I (GO:0009522),Cellular Component: photosystem I reaction center (GO:0009538);InterPro=Photosystem I PsaE%2C reaction centre subunit IV (IPR003375),Electron transport accessory protein-like domain (IPR008990);NIAS_FLcDNA=J013149C06;Oryzabase=9587;Expression=AK120598;TENOR=Os07t0435300-01;KEGG=Os07t0435300-01
Chr07	irgsp1_rep	five_prime_UTR	14533317	14533391	.	+	.	Parent=Os07t0435300-01
Chr07	irgsp1_rep	CDS	14533392	14533416	.	+	0	Parent=Os07t0435300-01
Chr07	irgsp1_rep	CDS	14533610	14533653	.	+	2	Parent=Os07t0435300-01
Chr07	irgsp1_rep	CDS	14533758	14533823	.	+	0	Parent=Os07t0435300-01
Chr07	irgsp1_rep	CDS	14533960	14534064	.	+	0	Parent=Os07t0435300-01
Chr07	irgsp1_rep	three_prime_UTR	14534065	14534258	.	+	.	Parent=Os07t0435300-01
Chr07	irgsp1_rep	mRNA	14534613	14541912	.	-	.	ID=Os07t0435400-01;Name=Os07t0435400-01;Locus_id=Os07g0435400;Oryzabase Gene Symbol Synonym(s)=OsWD40-143;Note=Similar to WD40.;Transcript_evidence=AK111603 (DDBJ%2C Best hit);ORF_evidence=Q5DMX4 (UniProt);GO=Biological Process: rRNA processing (GO:0006364),Cellular Component: nucleus (GO:0005634),Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),BOP1%2C N-terminal (IPR012953),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J013096A10;Oryzabase=10824;Expression=AK111603;TENOR=Os07t0435400-01;KEGG=Os07t0435400-01
Chr07	irgsp1_rep	five_prime_UTR	14541747	14541912	.	-	.	Parent=Os07t0435400-01
Chr07	irgsp1_rep	CDS	14541657	14541746	.	-	0	Parent=Os07t0435400-01
Chr07	irgsp1_rep	CDS	14541429	14541527	.	-	0	Parent=Os07t0435400-01
Chr07	irgsp1_rep	CDS	14541175	14541329	.	-	0	Parent=Os07t0435400-01
Chr07	irgsp1_rep	CDS	14540471	14540588	.	-	1	Parent=Os07t0435400-01
Chr07	irgsp1_rep	CDS	14539872	14539973	.	-	0	Parent=Os07t0435400-01
Chr07	irgsp1_rep	CDS	14539166	14539325	.	-	0	Parent=Os07t0435400-01
Chr07	irgsp1_rep	CDS	14538909	14539017	.	-	2	Parent=Os07t0435400-01
Chr07	irgsp1_rep	CDS	14538726	14538828	.	-	1	Parent=Os07t0435400-01
Chr07	irgsp1_rep	CDS	14538449	14538599	.	-	0	Parent=Os07t0435400-01
Chr07	irgsp1_rep	CDS	14538150	14538282	.	-	2	Parent=Os07t0435400-01
Chr07	irgsp1_rep	CDS	14537959	14538065	.	-	1	Parent=Os07t0435400-01
Chr07	irgsp1_rep	CDS	14537801	14537871	.	-	2	Parent=Os07t0435400-01
Chr07	irgsp1_rep	CDS	14537652	14537712	.	-	0	Parent=Os07t0435400-01
Chr07	irgsp1_rep	CDS	14536880	14537107	.	-	2	Parent=Os07t0435400-01
Chr07	irgsp1_rep	CDS	14536625	14536709	.	-	2	Parent=Os07t0435400-01
Chr07	irgsp1_rep	CDS	14535512	14535690	.	-	1	Parent=Os07t0435400-01
Chr07	irgsp1_rep	CDS	14535000	14535085	.	-	2	Parent=Os07t0435400-01
Chr07	irgsp1_rep	three_prime_UTR	14534613	14534999	.	-	.	Parent=Os07t0435400-01
Chr07	irgsp1_rep	mRNA	14534599	14535021	.	-	.	ID=Os07t0435400-02;Name=Os07t0435400-02;Locus_id=Os07g0435400;Oryzabase Gene Symbol Synonym(s)=OsWD40-143;Note=Non-protein coding transcript.;Transcript_evidence=AK112040 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-044-G08;Oryzabase=10824;TENOR=Os07t0435400-02
Chr07	irgsp1_rep	exon	14534599	14535021	.	-	.	Parent=Os07t0435400-02
Chr07	irgsp1_rep	mRNA	14553035	14553089	.	-	.	ID=Os07t0435850-00;Name=Os07t0435850-00;Locus_id=Os07g0435850;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0435850-00
Chr07	irgsp1_rep	exon	14553035	14553089	.	-	.	Parent=Os07t0435850-00
Chr07	irgsp1_rep	mRNA	14563261	14570004	.	+	.	ID=Os07t0435900-01;Name=Os07t0435900-01;Locus_id=Os07g0435900;Oryzabase Gene Symbol Synonym(s)=OsSET25%2C SDG726%2C OsSUVH2%2C DLN184%2C OsDLN184%2C HKMTs;Oryzabase Gene Name Synonym(s)=SET protein 25%2C SUVH Histone Methyltransferase 2%2C DLN repressor 184%2C DLN motif protein 184%2C Histone-lysine N-methyltransferase family member;Note=SET domain containing protein.;Transcript_evidence=AK067172 (DDBJ%2C Best hit);ORF_evidence=XP_002315593.1 (RefSeq);GO=Biological Process: histone lysine methylation (GO:0034968),Cellular Component: nucleus (GO:0005634),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: histone-lysine N-methyltransferase activity (GO:0018024),Molecular Function: histone binding (GO:0042393);InterPro=SET domain (IPR001214),SRA-YDG (IPR003105),Pre-SET domain (IPR007728);NIAS_FLcDNA=J013097K17;Oryzabase=13389;Expression=AK067172;TENOR=Os07t0435900-01;KEGG=Os07t0435900-01
Chr07	irgsp1_rep	five_prime_UTR	14563261	14563557	.	+	.	Parent=Os07t0435900-01
Chr07	irgsp1_rep	CDS	14563558	14565612	.	+	0	Parent=Os07t0435900-01
Chr07	irgsp1_rep	three_prime_UTR	14565613	14565725	.	+	.	Parent=Os07t0435900-01
Chr07	irgsp1_rep	three_prime_UTR	14569683	14570004	.	+	.	Parent=Os07t0435900-01
Chr07	irgsp1_rep	mRNA	14574609	14580312	.	-	.	ID=Os07t0436100-01;Name=Os07t0436100-01;Locus_id=Os07g0436100;Note=Similar to predicted protein.;Transcript_evidence=AK243522 (DDBJ%2C Best hit);ORF_evidence=NP_563716.3 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683),Protein of unknown function DUF3424 (IPR021832);NIAS_FLcDNA=J100075L13;TENOR=Os07t0436100-01;KEGG=Os07t0436100-01
Chr07	irgsp1_rep	five_prime_UTR	14580137	14580312	.	-	.	Parent=Os07t0436100-01
Chr07	irgsp1_rep	five_prime_UTR	14579983	14580047	.	-	.	Parent=Os07t0436100-01
Chr07	irgsp1_rep	CDS	14578348	14579982	.	-	0	Parent=Os07t0436100-01
Chr07	irgsp1_rep	CDS	14575078	14575413	.	-	0	Parent=Os07t0436100-01
Chr07	irgsp1_rep	three_prime_UTR	14574609	14575077	.	-	.	Parent=Os07t0436100-01
Chr07	irgsp1_rep	mRNA	14597677	14598857	.	-	.	ID=Os07t0436350-01;Name=Os07t0436350-01;Locus_id=Os07g0436350;Note=Hypothetical conserved gene.;Transcript_evidence=AK241013 (DDBJ%2C Best hit);ORF_evidence=Q7XHM4 (UniProt);NIAS_FLcDNA=J065053O17;TENOR=Os07t0436350-01;KEGG=Os07t0436350-01
Chr07	irgsp1_rep	five_prime_UTR	14598665	14598857	.	-	.	Parent=Os07t0436350-01
Chr07	irgsp1_rep	CDS	14598551	14598664	.	-	0	Parent=Os07t0436350-01
Chr07	irgsp1_rep	three_prime_UTR	14597677	14598550	.	-	.	Parent=Os07t0436350-01
Chr07	irgsp1_rep	mRNA	14606243	14607901	.	+	.	ID=Os07t0436600-00;Name=Os07t0436600-00;Locus_id=Os07g0436600;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK369439 (DDBJ);ORF_evidence=NP_001059506.1 (RefSeq);InterPro=Pentatricopeptide repeat (IPR002885);TENOR=Os07t0436600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	14606243	14606243	.	+	.	Parent=Os07t0436600-00
Chr07	irgsp1_rep	CDS	14606244	14607788	.	+	0	Parent=Os07t0436600-00
Chr07	irgsp1_rep	three_prime_UTR	14607789	14607901	.	+	.	Parent=Os07t0436600-00
Chr07	irgsp1_rep	mRNA	14609056	14617711	.	+	.	ID=Os07t0436700-01;Name=Os07t0436700-01;Locus_id=Os07g0436700;Note=Conserved hypothetical protein.;Transcript_evidence=AK119377 (DDBJ%2C Best hit);ORF_evidence=A2YKR4 (UniProt);NIAS_FLcDNA=001-132-A10;Expression=AK119377;TENOR=Os07t0436700-01;KEGG=Os07t0436700-01
Chr07	irgsp1_rep	five_prime_UTR	14609056	14609138	.	+	.	Parent=Os07t0436700-01
Chr07	irgsp1_rep	five_prime_UTR	14609904	14610200	.	+	.	Parent=Os07t0436700-01
Chr07	irgsp1_rep	CDS	14610201	14610503	.	+	0	Parent=Os07t0436700-01
Chr07	irgsp1_rep	three_prime_UTR	14610504	14610508	.	+	.	Parent=Os07t0436700-01
Chr07	irgsp1_rep	three_prime_UTR	14611592	14611832	.	+	.	Parent=Os07t0436700-01
Chr07	irgsp1_rep	three_prime_UTR	14613129	14613196	.	+	.	Parent=Os07t0436700-01
Chr07	irgsp1_rep	three_prime_UTR	14613747	14613850	.	+	.	Parent=Os07t0436700-01
Chr07	irgsp1_rep	three_prime_UTR	14614013	14614683	.	+	.	Parent=Os07t0436700-01
Chr07	irgsp1_rep	three_prime_UTR	14614805	14615700	.	+	.	Parent=Os07t0436700-01
Chr07	irgsp1_rep	three_prime_UTR	14617300	14617711	.	+	.	Parent=Os07t0436700-01
Chr07	irgsp1_rep	mRNA	14618258	14620518	.	-	.	ID=Os07t0437000-01;Name=Os07t0437000-01;Locus_id=Os07g0437000;RAP-DB Gene Symbol Synonym(s)=YUCCA6%2C OsYUCCA6%2C OsYUC6;RAP-DB Gene Name Synonym(s)=YUCCA-LIKE GENE 6%2C (YUCCA-like gene);CGSNL Gene Symbol=YUCCA6;CGSNL Gene Name=YUCCA-LIKE GENE 6;Oryzabase Gene Symbol Synonym(s)=OsYUCCA6%2C OsYUC6%2C YUC6;Oryzabase Gene Name Synonym(s)=(YUCCA-like gene);Note=Flavin monooxygenase-like enzyme %2C Auxin biosynthesis;Transcript_evidence=AP005783_BAC80117_41;ORF_evidence=Q7XHL8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Pyridine nucleotide-disulphide oxidoreductase%2C class-II (IPR000103),FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR013027);Manual Curation=July 1%2C 2010;Literature_PMID=17220367;Oryzabase=7443;TENOR=Os07t0437000-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	14620502	14620518	.	-	.	Parent=Os07t0437000-01
Chr07	irgsp1_rep	CDS	14619866	14620501	.	-	0	Parent=Os07t0437000-01
Chr07	irgsp1_rep	CDS	14619336	14619710	.	-	0	Parent=Os07t0437000-01
Chr07	irgsp1_rep	CDS	14618744	14618929	.	-	0	Parent=Os07t0437000-01
Chr07	irgsp1_rep	three_prime_UTR	14618258	14618743	.	-	.	Parent=Os07t0437000-01
Chr07	irgsp1_rep	mRNA	14619333	14619645	.	+	.	ID=Os07t0437250-00;Name=Os07t0437250-00;Locus_id=Os07g0437250;Note=Hypothetical protein.;Transcript_evidence=EU972174 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0437250-00
Chr07	irgsp1_rep	CDS	14619333	14619645	.	+	0	Parent=Os07t0437250-00
Chr07	irgsp1_rep	mRNA	14668015	14676605	.	+	.	ID=Os07t0437500-01;Name=Os07t0437500-01;Locus_id=Os07g0437500;RAP-DB Gene Symbol Synonym(s)=TDC2;RAP-DB Gene Name Synonym(s)=TRYPTOPHAN DECARBOXYLASE 2%2C Trp decarboxylase 2;CGSNL Gene Symbol=TDC2;CGSNL Gene Name=TRYPTOPHAN DECARBOXYLASE 2;Oryzabase Gene Symbol Synonym(s)=OsTDC2;Oryzabase Gene Name Synonym(s)=Trp decarboxylase 2;Note=Aromatic L-amino acid decarboxylase (AADC)%2C Serotonin biosynthesis;Transcript_evidence=AK103253 (Genbank);ORF_evidence=Q0D6V0 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: carboxylic acid metabolic process (GO:0019752),Molecular Function: catalytic activity (GO:0003824),Molecular Function: carboxy-lyase activity (GO:0016831),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent decarboxylase (IPR002129),Aromatic-L-amino-acid decarboxylase (IPR010977),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424),Pyridoxal-phosphate binding site (IPR021115);NIAS_FLcDNA=J033123O09;Manual Curation=July 28%2C 2009;Literature_PMID=17763868,19439571;Oryzabase=10294;Expression=AK103253;TENOR=Os07t0437500-01;KEGG=Os07t0437500-01 (EC:4.1.1.25%2C EC:4.1.1.28)
Chr07	irgsp1_rep	five_prime_UTR	14668015	14668124	.	+	.	Parent=Os07t0437500-01
Chr07	irgsp1_rep	CDS	14668125	14668126	.	+	0	Parent=Os07t0437500-01
Chr07	irgsp1_rep	CDS	14668272	14668416	.	+	1	Parent=Os07t0437500-01
Chr07	irgsp1_rep	CDS	14670995	14671070	.	+	0	Parent=Os07t0437500-01
Chr07	irgsp1_rep	CDS	14671251	14671481	.	+	2	Parent=Os07t0437500-01
Chr07	irgsp1_rep	CDS	14671973	14672136	.	+	2	Parent=Os07t0437500-01
Chr07	irgsp1_rep	CDS	14672374	14672514	.	+	0	Parent=Os07t0437500-01
Chr07	irgsp1_rep	CDS	14673211	14673270	.	+	0	Parent=Os07t0437500-01
Chr07	irgsp1_rep	CDS	14673937	14674101	.	+	0	Parent=Os07t0437500-01
Chr07	irgsp1_rep	CDS	14674255	14674311	.	+	0	Parent=Os07t0437500-01
Chr07	irgsp1_rep	CDS	14674663	14674727	.	+	0	Parent=Os07t0437500-01
Chr07	irgsp1_rep	CDS	14675814	14675937	.	+	1	Parent=Os07t0437500-01
Chr07	irgsp1_rep	CDS	14676048	14676185	.	+	0	Parent=Os07t0437500-01
Chr07	irgsp1_rep	CDS	14676284	14676409	.	+	0	Parent=Os07t0437500-01
Chr07	irgsp1_rep	three_prime_UTR	14676410	14676605	.	+	.	Parent=Os07t0437500-01
Chr07	irgsp1_rep	mRNA	14674266	14676707	.	+	.	ID=Os07t0437500-02;Name=Os07t0437500-02;Locus_id=Os07g0437500;CGSNL Gene Symbol=TDC2;CGSNL Gene Name=TRYPTOPHAN DECARBOXYLASE 2;Oryzabase Gene Symbol Synonym(s)=OsTDC2;Oryzabase Gene Name Synonym(s)=Trp decarboxylase 2;Note=Similar to Tryptophan decarboxylase.;Transcript_evidence=AK060367 (DDBJ%2C Best hit);ORF_evidence=C0LIF0 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: carboxylic acid metabolic process (GO:0019752),Molecular Function: catalytic activity (GO:0003824),Molecular Function: carboxy-lyase activity (GO:0016831),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent decarboxylase (IPR002129),Aromatic-L-amino-acid decarboxylase (IPR010977),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=001-009-A08;Oryzabase=10294;Expression=AK060367;TENOR=Os07t0437500-02;KEGG=Os07t0437500-02 (EC:4.1.1.28)
Chr07	irgsp1_rep	five_prime_UTR	14674266	14674266	.	+	.	Parent=Os07t0437500-02
Chr07	irgsp1_rep	CDS	14674267	14674311	.	+	0	Parent=Os07t0437500-02
Chr07	irgsp1_rep	CDS	14674663	14674727	.	+	0	Parent=Os07t0437500-02
Chr07	irgsp1_rep	CDS	14675814	14675937	.	+	1	Parent=Os07t0437500-02
Chr07	irgsp1_rep	CDS	14676048	14676185	.	+	0	Parent=Os07t0437500-02
Chr07	irgsp1_rep	CDS	14676284	14676409	.	+	0	Parent=Os07t0437500-02
Chr07	irgsp1_rep	three_prime_UTR	14676410	14676707	.	+	.	Parent=Os07t0437500-02
Chr07	irgsp1_rep	mRNA	14714988	14717844	.	-	.	ID=Os07t0438300-01;Name=Os07t0438300-01;Locus_id=Os07g0438300;Note=Similar to OSIGBa0153E02-OSIGBa0093I20.19 protein.;Transcript_evidence=AK106732 (DDBJ%2C Best hit);ORF_evidence=Q01HQ6 (UniProt);NIAS_FLcDNA=002-114-H11;TENOR=Os07t0438300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	14716980	14717844	.	-	.	Parent=Os07t0438300-01
Chr07	irgsp1_rep	five_prime_UTR	14716041	14716131	.	-	.	Parent=Os07t0438300-01
Chr07	irgsp1_rep	five_prime_UTR	14715675	14715948	.	-	.	Parent=Os07t0438300-01
Chr07	irgsp1_rep	five_prime_UTR	14715474	14715589	.	-	.	Parent=Os07t0438300-01
Chr07	irgsp1_rep	CDS	14715180	14715473	.	-	0	Parent=Os07t0438300-01
Chr07	irgsp1_rep	three_prime_UTR	14714988	14715179	.	-	.	Parent=Os07t0438300-01
Chr07	irgsp1_rep	mRNA	14723111	14727159	.	+	.	ID=Os07t0438500-01;Name=Os07t0438500-01;Locus_id=Os07g0438500;Note=Octicosapeptide/Phox/Bem1p domain containing protein.;Transcript_evidence=AK072144 (DDBJ%2C Best hit);ORF_evidence=C3SA69 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Phox/Bem1p (IPR000270);NIAS_FLcDNA=J013128O20;TENOR=Os07t0438500-01
Chr07	irgsp1_rep	five_prime_UTR	14723111	14723453	.	+	.	Parent=Os07t0438500-01
Chr07	irgsp1_rep	five_prime_UTR	14724417	14724572	.	+	.	Parent=Os07t0438500-01
Chr07	irgsp1_rep	CDS	14724573	14727159	.	+	0	Parent=Os07t0438500-01
Chr07	irgsp1_rep	mRNA	14730373	14731487	.	+	.	ID=Os07t0438550-01;Name=Os07t0438550-01;Locus_id=Os07g0438550;Note=Similar to salt-inducible protein kinase.;Transcript_evidence=AK241123 (DDBJ%2C Best hit);ORF_evidence=NP_001105276.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J065095E23;TENOR=Os07t0438550-01;KEGG=Os07t0438550-01
Chr07	irgsp1_rep	five_prime_UTR	14730373	14730374	.	+	.	Parent=Os07t0438550-01
Chr07	irgsp1_rep	CDS	14730375	14730420	.	+	0	Parent=Os07t0438550-01
Chr07	irgsp1_rep	CDS	14731072	14731253	.	+	2	Parent=Os07t0438550-01
Chr07	irgsp1_rep	three_prime_UTR	14731254	14731487	.	+	.	Parent=Os07t0438550-01
Chr07	irgsp1_rep	mRNA	14733235	14734901	.	+	.	ID=Os07t0438600-01;Name=Os07t0438600-01;Locus_id=Os07g0438600;Note=Proteinase inhibitor I9%2C subtilisin propeptide domain containing protein.;Transcript_evidence=AK102261 (DDBJ%2C Best hit);ORF_evidence=B8B5N6 (UniProt);GO=Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Proteinase inhibitor%2C propeptide (IPR009020),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500);NIAS_FLcDNA=J033088K11;Expression=AK102261;TENOR=Os07t0438600-01;KEGG=Os07t0438600-01
Chr07	irgsp1_rep	five_prime_UTR	14733235	14733324	.	+	.	Parent=Os07t0438600-01
Chr07	irgsp1_rep	CDS	14733325	14733515	.	+	0	Parent=Os07t0438600-01
Chr07	irgsp1_rep	CDS	14733690	14733787	.	+	1	Parent=Os07t0438600-01
Chr07	irgsp1_rep	CDS	14734492	14734556	.	+	2	Parent=Os07t0438600-01
Chr07	irgsp1_rep	three_prime_UTR	14734557	14734901	.	+	.	Parent=Os07t0438600-01
Chr07	irgsp1_rep	mRNA	14741197	14746212	.	+	.	ID=Os07t0438700-01;Name=Os07t0438700-01;Locus_id=Os07g0438700;Note=Hypothetical conserved gene.;Transcript_evidence=AK241427 (DDBJ%2C Best hit);ORF_evidence=B9FWZ0 (UniProt);InterPro=TLDc (IPR006571);NIAS_FLcDNA=J065161N01;TENOR=Os07t0438700-01;KEGG=Os07t0438700-01
Chr07	irgsp1_rep	five_prime_UTR	14741197	14741369	.	+	.	Parent=Os07t0438700-01
Chr07	irgsp1_rep	CDS	14741370	14741477	.	+	0	Parent=Os07t0438700-01
Chr07	irgsp1_rep	CDS	14742492	14742943	.	+	0	Parent=Os07t0438700-01
Chr07	irgsp1_rep	CDS	14743053	14743125	.	+	1	Parent=Os07t0438700-01
Chr07	irgsp1_rep	CDS	14743240	14743320	.	+	0	Parent=Os07t0438700-01
Chr07	irgsp1_rep	CDS	14743589	14743652	.	+	0	Parent=Os07t0438700-01
Chr07	irgsp1_rep	CDS	14744252	14744339	.	+	2	Parent=Os07t0438700-01
Chr07	irgsp1_rep	CDS	14744422	14744506	.	+	1	Parent=Os07t0438700-01
Chr07	irgsp1_rep	CDS	14745769	14745807	.	+	0	Parent=Os07t0438700-01
Chr07	irgsp1_rep	three_prime_UTR	14745808	14746212	.	+	.	Parent=Os07t0438700-01
Chr07	irgsp1_rep	mRNA	14753753	14759288	.	+	.	ID=Os07t0438800-01;Name=Os07t0438800-01;Locus_id=Os07g0438800;RAP-DB Gene Symbol Synonym(s)=PHR2%2C OsPHR2%2C Os-PHR2;RAP-DB Gene Name Synonym(s)=PHOSPHATE STARVATION RESPONSE 2%2C Phosphate Starvation Response2%2C PHOSPHATE RESPONSE2;CGSNL Gene Symbol=PHR2;CGSNL Gene Name=PHOSPHATE STARVATION RESPONSE 2;Oryzabase Gene Symbol Synonym(s)=OsPHR2%2C Os-PHR2;Oryzabase Gene Name Synonym(s)=Phosphate Starvation Response2%2C PHOSPHATE RESPONSE2%2C PHOSPHATE STARVATION RESPONSE REGULATOR 2;Note=MYB-CC family protein%2C Pi-starvation signaling;Transcript_evidence=AK100065 (Genbank),AK060412 (Genbank);ORF_evidence=Q6Z156 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=001-010-E04,J013160O05;Manual Curation=June 11%2C 2010;Literature_PMID=18263782,20149131;Oryzabase=9629;TENOR=Os07t0438800-01;KEGG=Os07t0438800-01
Chr07	irgsp1_rep	five_prime_UTR	14753753	14753856	.	+	.	Parent=Os07t0438800-01
Chr07	irgsp1_rep	five_prime_UTR	14754467	14754575	.	+	.	Parent=Os07t0438800-01
Chr07	irgsp1_rep	CDS	14754576	14755178	.	+	0	Parent=Os07t0438800-01
Chr07	irgsp1_rep	CDS	14756392	14756599	.	+	0	Parent=Os07t0438800-01
Chr07	irgsp1_rep	CDS	14756681	14756757	.	+	2	Parent=Os07t0438800-01
Chr07	irgsp1_rep	CDS	14756842	14756881	.	+	0	Parent=Os07t0438800-01
Chr07	irgsp1_rep	CDS	14756992	14757052	.	+	2	Parent=Os07t0438800-01
Chr07	irgsp1_rep	CDS	14757699	14757768	.	+	1	Parent=Os07t0438800-01
Chr07	irgsp1_rep	CDS	14758593	14758794	.	+	0	Parent=Os07t0438800-01
Chr07	irgsp1_rep	CDS	14758890	14758909	.	+	2	Parent=Os07t0438800-01
Chr07	irgsp1_rep	three_prime_UTR	14758910	14759288	.	+	.	Parent=Os07t0438800-01
Chr07	irgsp1_rep	mRNA	14753759	14757053	.	+	.	ID=Os07t0438800-02;Name=Os07t0438800-02;Locus_id=Os07g0438800;CGSNL Gene Symbol=PHR2;CGSNL Gene Name=PHOSPHATE STARVATION RESPONSE 2;Oryzabase Gene Symbol Synonym(s)=OsPHR2%2C Os-PHR2;Oryzabase Gene Name Synonym(s)=Phosphate Starvation Response2%2C PHOSPHATE RESPONSE2%2C PHOSPHATE STARVATION RESPONSE REGULATOR 2;Note=Similar to Phosphate starvation response regulator-like protein.;Transcript_evidence=AK103195 (DDBJ%2C Best hit);ORF_evidence=Q84P88 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J033121P15;Oryzabase=9629;TENOR=Os07t0438800-02;KEGG=Os07t0438800-02
Chr07	irgsp1_rep	five_prime_UTR	14753759	14753856	.	+	.	Parent=Os07t0438800-02
Chr07	irgsp1_rep	five_prime_UTR	14754467	14754575	.	+	.	Parent=Os07t0438800-02
Chr07	irgsp1_rep	CDS	14754576	14755178	.	+	0	Parent=Os07t0438800-02
Chr07	irgsp1_rep	CDS	14756392	14756599	.	+	0	Parent=Os07t0438800-02
Chr07	irgsp1_rep	CDS	14756681	14756757	.	+	2	Parent=Os07t0438800-02
Chr07	irgsp1_rep	CDS	14756842	14756881	.	+	0	Parent=Os07t0438800-02
Chr07	irgsp1_rep	CDS	14756992	14757053	.	+	2	Parent=Os07t0438800-02
Chr07	irgsp1_rep	mRNA	14764256	14767041	.	+	.	ID=Os07t0439000-01;Name=Os07t0439000-01;Locus_id=Os07g0439000;Note=Hypothetical conserved gene.;Transcript_evidence=AK106708 (DDBJ%2C Best hit);ORF_evidence=A3BJ80 (UniProt);NIAS_FLcDNA=002-114-F01;Expression=AK106708;TENOR=Os07t0439000-01;KEGG=Os07t0439000-01
Chr07	irgsp1_rep	five_prime_UTR	14764256	14766732	.	+	.	Parent=Os07t0439000-01
Chr07	irgsp1_rep	CDS	14766733	14766909	.	+	0	Parent=Os07t0439000-01
Chr07	irgsp1_rep	three_prime_UTR	14766910	14767041	.	+	.	Parent=Os07t0439000-01
Chr07	irgsp1_rep	mRNA	14774623	14779028	.	-	.	ID=Os07t0439100-01;Name=Os07t0439100-01;Locus_id=Os07g0439100;Note=KH%2C type 1 domain containing protein.;Transcript_evidence=AK110757 (DDBJ%2C Best hit);ORF_evidence=B9FWZ2 (UniProt);NIAS_FLcDNA=002-170-H02;Expression=AK110757;TENOR=Os07t0439100-01;KEGG=Os07t0439100-01
Chr07	irgsp1_rep	five_prime_UTR	14778948	14779028	.	-	.	Parent=Os07t0439100-01
Chr07	irgsp1_rep	CDS	14778861	14778947	.	-	0	Parent=Os07t0439100-01
Chr07	irgsp1_rep	CDS	14778405	14778551	.	-	0	Parent=Os07t0439100-01
Chr07	irgsp1_rep	CDS	14778264	14778335	.	-	0	Parent=Os07t0439100-01
Chr07	irgsp1_rep	CDS	14777159	14777331	.	-	0	Parent=Os07t0439100-01
Chr07	irgsp1_rep	CDS	14776121	14776208	.	-	1	Parent=Os07t0439100-01
Chr07	irgsp1_rep	CDS	14774948	14775082	.	-	0	Parent=Os07t0439100-01
Chr07	irgsp1_rep	three_prime_UTR	14774623	14774947	.	-	.	Parent=Os07t0439100-01
Chr07	irgsp1_rep	mRNA	14817883	14818361	.	-	.	ID=Os07t0439750-00;Name=Os07t0439750-00;Locus_id=Os07g0439750;Note=Hypothetical conserved gene.;Transcript_evidence=EU958332 (DDBJ);ORF_evidence=B9ETH5 (UniProt);TENOR=Os07t0439750-00;KEGG=Os07t0439750-00
Chr07	irgsp1_rep	five_prime_UTR	14818304	14818361	.	-	.	Parent=Os07t0439750-00
Chr07	irgsp1_rep	CDS	14817992	14818303	.	-	0	Parent=Os07t0439750-00
Chr07	irgsp1_rep	three_prime_UTR	14817883	14817991	.	-	.	Parent=Os07t0439750-00
Chr07	irgsp1_rep	mRNA	14824356	14825681	.	-	.	ID=Os07t0440100-00;Name=Os07t0440100-00;Locus_id=Os07g0440100;Note=Conserved hypothetical protein.;Transcript_evidence=AK358771 (DDBJ);ORF_evidence=NP_001059520.1 (RefSeq);TENOR=Os07t0440100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	14825625	14825681	.	-	.	Parent=Os07t0440100-00
Chr07	irgsp1_rep	CDS	14824356	14825624	.	-	0	Parent=Os07t0440100-00
Chr07	irgsp1_rep	mRNA	14862558	14864342	.	-	.	ID=Os07t0440700-01;Name=Os07t0440700-01;Locus_id=Os07g0440700;Note=Hypothetical conserved gene.;Transcript_evidence=AK108717 (DDBJ%2C Best hit);ORF_evidence=Q6H7Y9 (UniProt);NIAS_FLcDNA=002-150-B09;Expression=AK108717;TENOR=Os07t0440700-01;KEGG=Os07t0440700-01
Chr07	irgsp1_rep	five_prime_UTR	14864307	14864342	.	-	.	Parent=Os07t0440700-01
Chr07	irgsp1_rep	CDS	14864157	14864306	.	-	0	Parent=Os07t0440700-01
Chr07	irgsp1_rep	three_prime_UTR	14862558	14864156	.	-	.	Parent=Os07t0440700-01
Chr07	irgsp1_rep	mRNA	14868464	14872147	.	-	.	ID=Os07t0440900-01;Name=Os07t0440900-01;Locus_id=Os07g0440900;Note=Conserved hypothetical protein.;Transcript_evidence=AK070423 (DDBJ%2C Best hit);ORF_evidence=B9FWZ6 (UniProt);NIAS_FLcDNA=J023048O19;TENOR=Os07t0440900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	14871270	14872147	.	-	.	Parent=Os07t0440900-01
Chr07	irgsp1_rep	CDS	14870472	14871269	.	-	0	Parent=Os07t0440900-01
Chr07	irgsp1_rep	three_prime_UTR	14868464	14870471	.	-	.	Parent=Os07t0440900-01
Chr07	irgsp1_rep	mRNA	14916043	14920448	.	+	.	ID=Os07t0442000-01;Name=Os07t0442000-01;Locus_id=Os07g0442000;Oryzabase Gene Symbol Synonym(s)=OsFbox371%2C Os_F0357;Oryzabase Gene Name Synonym(s)=F-box protein 371;Note=Conserved hypothetical protein.;Transcript_evidence=AK068559 (DDBJ%2C Best hit);ORF_evidence=B9FWZ7 (UniProt);NIAS_FLcDNA=J013152M20;Oryzabase=17146;TENOR=Os07t0442000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	14916043	14916239	.	+	.	Parent=Os07t0442000-01
Chr07	irgsp1_rep	CDS	14916240	14916838	.	+	0	Parent=Os07t0442000-01
Chr07	irgsp1_rep	CDS	14918015	14918111	.	+	1	Parent=Os07t0442000-01
Chr07	irgsp1_rep	three_prime_UTR	14918112	14918172	.	+	.	Parent=Os07t0442000-01
Chr07	irgsp1_rep	three_prime_UTR	14918258	14919112	.	+	.	Parent=Os07t0442000-01
Chr07	irgsp1_rep	three_prime_UTR	14919213	14919371	.	+	.	Parent=Os07t0442000-01
Chr07	irgsp1_rep	three_prime_UTR	14919921	14920448	.	+	.	Parent=Os07t0442000-01
Chr07	irgsp1_rep	mRNA	14973713	14974977	.	-	.	ID=Os07t0442800-01;Name=Os07t0442800-01;Locus_id=Os07g0442800;Note=Conserved hypothetical protein.;Transcript_evidence=AK103470 (DDBJ%2C Best hit);ORF_evidence=NP_001052040.2 (RefSeq);NIAS_FLcDNA=J033130A10;TENOR=Os07t0442800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	14974757	14974977	.	-	.	Parent=Os07t0442800-01
Chr07	irgsp1_rep	CDS	14974205	14974756	.	-	0	Parent=Os07t0442800-01
Chr07	irgsp1_rep	three_prime_UTR	14973713	14974204	.	-	.	Parent=Os07t0442800-01
Chr07	irgsp1_rep	mRNA	14988874	14990789	.	+	.	ID=Os07t0442900-01;Name=Os07t0442900-01;Locus_id=Os07g0442900;Note=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup domain containing protein.;Transcript_evidence=AK073296 (DDBJ%2C Best hit);ORF_evidence=NP_001151672.1 (RefSeq);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup (IPR006459),Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);NIAS_FLcDNA=J033029H14;Expression=AK073296;TENOR=Os07t0442900-01;KEGG=Os07t0442900-01
Chr07	irgsp1_rep	five_prime_UTR	14988874	14988944	.	+	.	Parent=Os07t0442900-01
Chr07	irgsp1_rep	CDS	14988945	14989219	.	+	0	Parent=Os07t0442900-01
Chr07	irgsp1_rep	CDS	14989348	14989474	.	+	1	Parent=Os07t0442900-01
Chr07	irgsp1_rep	CDS	14990317	14990538	.	+	0	Parent=Os07t0442900-01
Chr07	irgsp1_rep	three_prime_UTR	14990539	14990789	.	+	.	Parent=Os07t0442900-01
Chr07	irgsp1_rep	mRNA	15033384	15037334	.	+	.	ID=Os07t0443500-00;Name=Os07t0443500-00;Locus_id=Os07g0443500;Oryzabase Gene Name Synonym(s)=MYB family transcription factor;Note=Molecular chaperone%2C heat shock protein%2C Hsp40%2C DnaJ domain containing protein.;Transcript_evidence=CT836143 (DDBJ%2C Best hit);ORF_evidence=NP_001148292.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),MYB-like (IPR017877);Oryzabase=23428;TENOR=Os07t0443500-00;KEGG=Os07t0443500-00
Chr07	irgsp1_rep	five_prime_UTR	15033384	15033531	.	+	.	Parent=Os07t0443500-00
Chr07	irgsp1_rep	CDS	15033532	15033801	.	+	0	Parent=Os07t0443500-00
Chr07	irgsp1_rep	three_prime_UTR	15033802	15033810	.	+	.	Parent=Os07t0443500-00
Chr07	irgsp1_rep	three_prime_UTR	15037000	15037334	.	+	.	Parent=Os07t0443500-00
Chr07	irgsp1_rep	mRNA	15048923	15057070	.	+	.	ID=Os07t0443700-00;Name=Os07t0443700-00;Locus_id=Os07g0443700;CGSNL Gene Symbol=RLCK227;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 227;Oryzabase Gene Symbol Synonym(s)=OsRLCK227;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 227;Note=Serine-threonine/tyrosine-protein kinase domain containing protein.;Transcript_evidence=AK355621 (DDBJ);ORF_evidence=Q6YT83 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009);Oryzabase=18922;TENOR=Os07t0443700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	15048923	15049068	.	+	.	Parent=Os07t0443700-00
Chr07	irgsp1_rep	five_prime_UTR	15054931	15055119	.	+	.	Parent=Os07t0443700-00
Chr07	irgsp1_rep	CDS	15055120	15055511	.	+	0	Parent=Os07t0443700-00
Chr07	irgsp1_rep	CDS	15056537	15056654	.	+	1	Parent=Os07t0443700-00
Chr07	irgsp1_rep	three_prime_UTR	15056655	15057070	.	+	.	Parent=Os07t0443700-00
Chr07	irgsp1_rep	mRNA	15069435	15077960	.	-	.	ID=Os07t0444000-01;Name=Os07t0444000-01;Locus_id=Os07g0444000;Note=Similar to Non-lysosomal glucosylceramidase.;Transcript_evidence=AK070141 (DDBJ%2C Best hit);ORF_evidence=B8B5P4 (UniProt);NIAS_FLcDNA=J023041G24;TENOR=Os07t0444000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	15077439	15077960	.	-	.	Parent=Os07t0444000-01
Chr07	irgsp1_rep	CDS	15077358	15077438	.	-	0	Parent=Os07t0444000-01
Chr07	irgsp1_rep	CDS	15076665	15076847	.	-	0	Parent=Os07t0444000-01
Chr07	irgsp1_rep	three_prime_UTR	15076544	15076664	.	-	.	Parent=Os07t0444000-01
Chr07	irgsp1_rep	three_prime_UTR	15076352	15076428	.	-	.	Parent=Os07t0444000-01
Chr07	irgsp1_rep	three_prime_UTR	15075172	15076266	.	-	.	Parent=Os07t0444000-01
Chr07	irgsp1_rep	three_prime_UTR	15074795	15074898	.	-	.	Parent=Os07t0444000-01
Chr07	irgsp1_rep	three_prime_UTR	15074321	15074374	.	-	.	Parent=Os07t0444000-01
Chr07	irgsp1_rep	three_prime_UTR	15074173	15074228	.	-	.	Parent=Os07t0444000-01
Chr07	irgsp1_rep	three_prime_UTR	15074039	15074078	.	-	.	Parent=Os07t0444000-01
Chr07	irgsp1_rep	three_prime_UTR	15073612	15073752	.	-	.	Parent=Os07t0444000-01
Chr07	irgsp1_rep	three_prime_UTR	15073276	15073460	.	-	.	Parent=Os07t0444000-01
Chr07	irgsp1_rep	three_prime_UTR	15072786	15072853	.	-	.	Parent=Os07t0444000-01
Chr07	irgsp1_rep	three_prime_UTR	15072286	15072570	.	-	.	Parent=Os07t0444000-01
Chr07	irgsp1_rep	three_prime_UTR	15070393	15071539	.	-	.	Parent=Os07t0444000-01
Chr07	irgsp1_rep	three_prime_UTR	15069435	15069921	.	-	.	Parent=Os07t0444000-01
Chr07	irgsp1_rep	mRNA	15069433	15071118	.	-	.	ID=Os07t0444000-02;Name=Os07t0444000-02;Locus_id=Os07g0444000;Note=Similar to predicted protein.;Transcript_evidence=AK105610 (DDBJ%2C Best hit);ORF_evidence=B9FX00 (UniProt);GO=Biological Process: sphingolipid metabolic process (GO:0006665),Cellular Component: integral to membrane (GO:0016021),Molecular Function: catalytic activity (GO:0003824),Molecular Function: glucosylceramidase activity (GO:0004348);InterPro=Glucosylceramidase (IPR006775),Six-hairpin glycosidase-like (IPR008928),Six-hairpin glycosidase (IPR012341);NIAS_FLcDNA=001-200-B04;Expression=AK105610;TENOR=Os07t0444000-02;KEGG=Os07t0444000-02
Chr07	irgsp1_rep	five_prime_UTR	15071118	15071118	.	-	.	Parent=Os07t0444000-02
Chr07	irgsp1_rep	CDS	15070393	15071117	.	-	0	Parent=Os07t0444000-02
Chr07	irgsp1_rep	CDS	15069663	15069921	.	-	1	Parent=Os07t0444000-02
Chr07	irgsp1_rep	three_prime_UTR	15069433	15069662	.	-	.	Parent=Os07t0444000-02
Chr07	irgsp1_rep	mRNA	15069646	15077431	.	+	.	ID=Os07t0444650-00;Name=Os07t0444650-00;Locus_id=Os07g0444650;Note=Hypothetical protein.;Transcript_evidence=tplb0036f09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0444650-00
Chr07	irgsp1_rep	five_prime_UTR	15069646	15069917	.	+	.	Parent=Os07t0444650-00
Chr07	irgsp1_rep	five_prime_UTR	15070386	15071120	.	+	.	Parent=Os07t0444650-00
Chr07	irgsp1_rep	CDS	15071121	15071381	.	+	0	Parent=Os07t0444650-00
Chr07	irgsp1_rep	three_prime_UTR	15071382	15071498	.	+	.	Parent=Os07t0444650-00
Chr07	irgsp1_rep	three_prime_UTR	15072276	15072343	.	+	.	Parent=Os07t0444650-00
Chr07	irgsp1_rep	three_prime_UTR	15072491	15072559	.	+	.	Parent=Os07t0444650-00
Chr07	irgsp1_rep	three_prime_UTR	15072770	15072844	.	+	.	Parent=Os07t0444650-00
Chr07	irgsp1_rep	three_prime_UTR	15073272	15073489	.	+	.	Parent=Os07t0444650-00
Chr07	irgsp1_rep	three_prime_UTR	15074156	15074233	.	+	.	Parent=Os07t0444650-00
Chr07	irgsp1_rep	three_prime_UTR	15074328	15074365	.	+	.	Parent=Os07t0444650-00
Chr07	irgsp1_rep	three_prime_UTR	15075165	15075271	.	+	.	Parent=Os07t0444650-00
Chr07	irgsp1_rep	three_prime_UTR	15075444	15075520	.	+	.	Parent=Os07t0444650-00
Chr07	irgsp1_rep	three_prime_UTR	15076163	15076277	.	+	.	Parent=Os07t0444650-00
Chr07	irgsp1_rep	three_prime_UTR	15076366	15076456	.	+	.	Parent=Os07t0444650-00
Chr07	irgsp1_rep	three_prime_UTR	15076672	15076841	.	+	.	Parent=Os07t0444650-00
Chr07	irgsp1_rep	three_prime_UTR	15077351	15077431	.	+	.	Parent=Os07t0444650-00
Chr07	irgsp1_rep	mRNA	15191912	15193680	.	-	.	ID=Os07t0445450-00;Name=Os07t0445450-00;Locus_id=Os07g0445450;Note=Hypothetical protein.;Transcript_evidence=tplb0061j05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0445450-00
Chr07	irgsp1_rep	five_prime_UTR	15193157	15193680	.	-	.	Parent=Os07t0445450-00
Chr07	irgsp1_rep	five_prime_UTR	15192680	15193097	.	-	.	Parent=Os07t0445450-00
Chr07	irgsp1_rep	CDS	15192380	15192679	.	-	0	Parent=Os07t0445450-00
Chr07	irgsp1_rep	three_prime_UTR	15191912	15192379	.	-	.	Parent=Os07t0445450-00
Chr07	irgsp1_rep	mRNA	15204094	15211471	.	-	.	ID=Os07t0445600-01;Name=Os07t0445600-01;Locus_id=Os07g0445600;Note=Conserved hypothetical protein.;Transcript_evidence=AK074000 (DDBJ%2C Best hit);ORF_evidence=B8B5P6 (UniProt);NIAS_FLcDNA=J033073D02;Expression=AK074000;TENOR=Os07t0445600-01;KEGG=Os07t0445600-01
Chr07	irgsp1_rep	five_prime_UTR	15210971	15211471	.	-	.	Parent=Os07t0445600-01
Chr07	irgsp1_rep	CDS	15210912	15210970	.	-	0	Parent=Os07t0445600-01
Chr07	irgsp1_rep	CDS	15210278	15210457	.	-	1	Parent=Os07t0445600-01
Chr07	irgsp1_rep	CDS	15210078	15210198	.	-	1	Parent=Os07t0445600-01
Chr07	irgsp1_rep	CDS	15209959	15209998	.	-	0	Parent=Os07t0445600-01
Chr07	irgsp1_rep	CDS	15209312	15209364	.	-	2	Parent=Os07t0445600-01
Chr07	irgsp1_rep	CDS	15209148	15209209	.	-	0	Parent=Os07t0445600-01
Chr07	irgsp1_rep	CDS	15208702	15208854	.	-	1	Parent=Os07t0445600-01
Chr07	irgsp1_rep	CDS	15207634	15207845	.	-	1	Parent=Os07t0445600-01
Chr07	irgsp1_rep	CDS	15205809	15207268	.	-	2	Parent=Os07t0445600-01
Chr07	irgsp1_rep	CDS	15204846	15204950	.	-	0	Parent=Os07t0445600-01
Chr07	irgsp1_rep	three_prime_UTR	15204798	15204845	.	-	.	Parent=Os07t0445600-01
Chr07	irgsp1_rep	three_prime_UTR	15204094	15204726	.	-	.	Parent=Os07t0445600-01
Chr07	irgsp1_rep	mRNA	15205607	15211446	.	-	.	ID=Os07t0445600-02;Name=Os07t0445600-02;Locus_id=Os07g0445600;Note=Conserved hypothetical protein.;Transcript_evidence=AK107130 (DDBJ%2C Best hit);ORF_evidence=B8B5P6 (UniProt);NIAS_FLcDNA=002-124-C04;TENOR=Os07t0445600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	15210912	15211446	.	-	.	Parent=Os07t0445600-02
Chr07	irgsp1_rep	five_prime_UTR	15210278	15210366	.	-	.	Parent=Os07t0445600-02
Chr07	irgsp1_rep	five_prime_UTR	15209959	15210198	.	-	.	Parent=Os07t0445600-02
Chr07	irgsp1_rep	five_prime_UTR	15209312	15209364	.	-	.	Parent=Os07t0445600-02
Chr07	irgsp1_rep	five_prime_UTR	15209148	15209209	.	-	.	Parent=Os07t0445600-02
Chr07	irgsp1_rep	five_prime_UTR	15208797	15208854	.	-	.	Parent=Os07t0445600-02
Chr07	irgsp1_rep	CDS	15208702	15208796	.	-	0	Parent=Os07t0445600-02
Chr07	irgsp1_rep	CDS	15207634	15207845	.	-	1	Parent=Os07t0445600-02
Chr07	irgsp1_rep	CDS	15205722	15207268	.	-	2	Parent=Os07t0445600-02
Chr07	irgsp1_rep	three_prime_UTR	15205607	15205721	.	-	.	Parent=Os07t0445600-02
Chr07	irgsp1_rep	mRNA	15221477	15223020	.	+	.	ID=Os07t0445800-00;Name=Os07t0445800-00;Locus_id=Os07g0445800;Note=Similar to Glycolipid transfer protein-like.;Transcript_evidence=tplb0002l20 (Wheat FLcDNA);ORF_evidence=Q6K1Q5 (UniProt);GO=Biological Process: glycolipid transport (GO:0046836),Cellular Component: cytoplasm (GO:0005737),Molecular Function: glycolipid transporter activity (GO:0017089),Molecular Function: glycolipid binding (GO:0051861);InterPro=Glycolipid transfer protein domain (IPR014830);TENOR=Os07t0445800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	15221477	15221480	.	+	.	Parent=Os07t0445800-00
Chr07	irgsp1_rep	CDS	15221481	15221598	.	+	0	Parent=Os07t0445800-00
Chr07	irgsp1_rep	CDS	15221686	15221741	.	+	2	Parent=Os07t0445800-00
Chr07	irgsp1_rep	CDS	15221928	15222058	.	+	0	Parent=Os07t0445800-00
Chr07	irgsp1_rep	CDS	15222146	15222281	.	+	1	Parent=Os07t0445800-00
Chr07	irgsp1_rep	CDS	15222751	15222882	.	+	0	Parent=Os07t0445800-00
Chr07	irgsp1_rep	CDS	15222975	15223010	.	+	0	Parent=Os07t0445800-00
Chr07	irgsp1_rep	three_prime_UTR	15223011	15223020	.	+	.	Parent=Os07t0445800-00
Chr07	irgsp1_rep	mRNA	15230974	15233283	.	+	.	ID=Os07t0446000-01;Name=Os07t0446000-01;Locus_id=Os07g0446000;Note=PAK-box/P21-Rho-binding domain containing protein.;Transcript_evidence=AK099317 (DDBJ%2C Best hit),AK072251 (DDBJ%2C Best hit);ORF_evidence=NP_001150843.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=PAK-box/P21-Rho-binding (IPR000095);NIAS_FLcDNA=J023144B01,J023004H21;TENOR=Os07t0446000-01
Chr07	irgsp1_rep	five_prime_UTR	15230974	15231180	.	+	.	Parent=Os07t0446000-01
Chr07	irgsp1_rep	five_prime_UTR	15231374	15231439	.	+	.	Parent=Os07t0446000-01
Chr07	irgsp1_rep	CDS	15231440	15231500	.	+	0	Parent=Os07t0446000-01
Chr07	irgsp1_rep	CDS	15231626	15231753	.	+	2	Parent=Os07t0446000-01
Chr07	irgsp1_rep	CDS	15232010	15232100	.	+	0	Parent=Os07t0446000-01
Chr07	irgsp1_rep	CDS	15232415	15232890	.	+	2	Parent=Os07t0446000-01
Chr07	irgsp1_rep	three_prime_UTR	15232891	15233283	.	+	.	Parent=Os07t0446000-01
Chr07	irgsp1_rep	mRNA	15232003	15232888	.	-	.	ID=Os07t0446050-00;Name=Os07t0446050-00;Locus_id=Os07g0446050;Note=Hypothetical gene.;Transcript_evidence=EU950203 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0446050-00;KEGG=Os07t0446050-00
Chr07	irgsp1_rep	five_prime_UTR	15232888	15232888	.	-	.	Parent=Os07t0446050-00
Chr07	irgsp1_rep	CDS	15232438	15232887	.	-	0	Parent=Os07t0446050-00
Chr07	irgsp1_rep	three_prime_UTR	15232383	15232437	.	-	.	Parent=Os07t0446050-00
Chr07	irgsp1_rep	three_prime_UTR	15232003	15232249	.	-	.	Parent=Os07t0446050-00
Chr07	irgsp1_rep	mRNA	15237188	15243001	.	-	.	ID=Os07t0446100-01;Name=Os07t0446100-01;Locus_id=Os07g0446100;Oryzabase Gene Symbol Synonym(s)=XBOS34;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK100927 (DDBJ%2C Best hit);ORF_evidence=B4F8Z4 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Ankyrin repeat (IPR002110),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J023134O07;Oryzabase=11148;Expression=AK100927;TENOR=Os07t0446100-01;KEGG=Os07t0446100-01
Chr07	irgsp1_rep	five_prime_UTR	15242515	15243001	.	-	.	Parent=Os07t0446100-01
Chr07	irgsp1_rep	CDS	15242413	15242514	.	-	0	Parent=Os07t0446100-01
Chr07	irgsp1_rep	CDS	15242189	15242303	.	-	0	Parent=Os07t0446100-01
Chr07	irgsp1_rep	CDS	15241046	15241126	.	-	2	Parent=Os07t0446100-01
Chr07	irgsp1_rep	CDS	15240874	15240962	.	-	2	Parent=Os07t0446100-01
Chr07	irgsp1_rep	CDS	15240691	15240782	.	-	0	Parent=Os07t0446100-01
Chr07	irgsp1_rep	CDS	15240469	15240550	.	-	1	Parent=Os07t0446100-01
Chr07	irgsp1_rep	CDS	15239621	15239723	.	-	0	Parent=Os07t0446100-01
Chr07	irgsp1_rep	CDS	15238572	15238657	.	-	2	Parent=Os07t0446100-01
Chr07	irgsp1_rep	CDS	15237473	15238264	.	-	0	Parent=Os07t0446100-01
Chr07	irgsp1_rep	three_prime_UTR	15237188	15237472	.	-	.	Parent=Os07t0446100-01
Chr07	irgsp1_rep	mRNA	15237199	15238330	.	-	.	ID=Os07t0446100-02;Name=Os07t0446100-02;Locus_id=Os07g0446100;Oryzabase Gene Symbol Synonym(s)=XBOS34;Note=Similar to Protein binding protein.;Transcript_evidence=AK059792 (DDBJ%2C Best hit);ORF_evidence=B4F8Z4 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=006-204-E05;Oryzabase=11148;TENOR=Os07t0446100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	15238256	15238330	.	-	.	Parent=Os07t0446100-02
Chr07	irgsp1_rep	CDS	15237473	15238255	.	-	0	Parent=Os07t0446100-02
Chr07	irgsp1_rep	three_prime_UTR	15237199	15237472	.	-	.	Parent=Os07t0446100-02
Chr07	irgsp1_rep	mRNA	15258017	15259460	.	+	.	ID=Os07t0446400-01;Name=Os07t0446400-01;Locus_id=Os07g0446400;Note=Non-protein coding transcript.;Transcript_evidence=AK119648 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-130-G08;TENOR=Os07t0446400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	exon	15258017	15259460	.	+	.	Parent=Os07t0446400-01
Chr07	irgsp1_rep	mRNA	15280459	15282788	.	-	.	ID=Os07t0446600-01;Name=Os07t0446600-01;Locus_id=Os07g0446600;Note=Similar to OSIGBa0102I15.5 protein.;Transcript_evidence=AK121016 (DDBJ%2C Best hit);ORF_evidence=Q01IW5 (UniProt);InterPro=Small subunit of serine palmitoyltransferase-like (IPR024512);NIAS_FLcDNA=J023048L02;Expression=AK121016;TENOR=Os07t0446600-01;KEGG=Os07t0446600-01
Chr07	irgsp1_rep	five_prime_UTR	15282674	15282788	.	-	.	Parent=Os07t0446600-01
Chr07	irgsp1_rep	CDS	15282371	15282673	.	-	0	Parent=Os07t0446600-01
Chr07	irgsp1_rep	three_prime_UTR	15280459	15282370	.	-	.	Parent=Os07t0446600-01
Chr07	irgsp1_rep	mRNA	15293180	15294805	.	+	.	ID=Os07t0446800-01;Name=Os07t0446800-01;Locus_id=Os07g0446800;RAP-DB Gene Symbol Synonym(s)=OsHXK1;RAP-DB Gene Name Synonym(s)=Hexokinase 1;CGSNL Gene Symbol=HXK1;CGSNL Gene Name=HEXOKINASE-1;Oryzabase Gene Symbol Synonym(s)=OsHXK1;Oryzabase Gene Name Synonym(s)=Hexokinase 1;Note=Hexokinase%2C Regulation of anther development;Transcript_evidence=DQ116383 (Jinmi);ORF_evidence=Q8LH82;GO=Biological Process: cellular glucose homeostasis (GO:0001678),Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hexokinase activity (GO:0004396),Molecular Function: ATP binding (GO:0005524),Molecular Function: glucose binding (GO:0005536),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Hexokinase (IPR001312),Hexokinase%2C N-terminal (IPR022672),Hexokinase%2C C-terminal (IPR022673);Manual Curation=April 9%2C 2019;Literature_PMID=30902896;Oryzabase=6750;TENOR=Os07t0446800-00;KEGG=Os07t0446800-00 (EC:2.7.1.1)
Chr07	irgsp1_rep	five_prime_UTR	15293180	15293214	.	+	.	Parent=Os07t0446800-01
Chr07	irgsp1_rep	CDS	15293215	15294711	.	+	0	Parent=Os07t0446800-01
Chr07	irgsp1_rep	three_prime_UTR	15294712	15294805	.	+	.	Parent=Os07t0446800-01
Chr07	irgsp1_rep	mRNA	15295358	15296221	.	-	.	ID=Os07t0446900-00;Name=Os07t0446900-00;Locus_id=Os07g0446900;Note=Similar to OSIGBa0102I15.5 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01IW5 (UniProt);InterPro=Small subunit of serine palmitoyltransferase-like (IPR024512);TENOR=Os07t0446900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	15296128	15296221	.	-	0	Parent=Os07t0446900-00
Chr07	irgsp1_rep	CDS	15295745	15295820	.	-	2	Parent=Os07t0446900-00
Chr07	irgsp1_rep	CDS	15295358	15295415	.	-	1	Parent=Os07t0446900-00
Chr07	irgsp1_rep	mRNA	15297784	15300052	.	-	.	ID=Os07t0447000-00;Name=Os07t0447000-00;Locus_id=Os07g0447000;Note=Protein of unknown function DUF594 domain containing protein.;Transcript_evidence=AK355561 (DDBJ);ORF_evidence=NP_001059540.1 (RefSeq);InterPro=Protein of unknown function DUF594 (IPR007658);TENOR=Os07t0447000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	15297878	15300052	.	-	0	Parent=Os07t0447000-00
Chr07	irgsp1_rep	three_prime_UTR	15297784	15297877	.	-	.	Parent=Os07t0447000-00
Chr07	irgsp1_rep	mRNA	15311507	15315649	.	-	.	ID=Os07t0447200-01;Name=Os07t0447200-01;Locus_id=Os07g0447200;Note=Similar to OSIGBa0102I15.5 protein.;Transcript_evidence=AK288459 (DDBJ%2C Best hit);ORF_evidence=Q01IW5 (UniProt);InterPro=Small subunit of serine palmitoyltransferase-like (IPR024512);NIAS_FLcDNA=J090035G07;TENOR=Os07t0447200-01;KEGG=Os07t0447200-01
Chr07	irgsp1_rep	five_prime_UTR	15311932	15315649	.	-	.	Parent=Os07t0447200-01
Chr07	irgsp1_rep	CDS	15311833	15311931	.	-	0	Parent=Os07t0447200-01
Chr07	irgsp1_rep	three_prime_UTR	15311507	15311832	.	-	.	Parent=Os07t0447200-01
Chr07	irgsp1_rep	mRNA	15339013	15351042	.	+	.	ID=Os07t0447800-01;Name=Os07t0447800-01;Locus_id=Os07g0447800;Note=Alpha-D-phosphohexomutase%2C alpha/beta/alpha I%2C II and III domain containing protein.;Transcript_evidence=AK064872 (DDBJ%2C Best hit);ORF_evidence=XP_002871771.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: intramolecular transferase activity%2C phosphotransferases (GO:0016868);InterPro=Alpha-D-phosphohexomutase superfamily (IPR005841),Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain I (IPR005844),Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain II (IPR005845),Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain III (IPR005846),Alpha-D-phosphohexomutase%2C alpha/beta/alpha I/II/III (IPR016055);NIAS_FLcDNA=J013000J06;Expression=AK064872;TENOR=Os07t0447800-01;KEGG=Os07t0447800-01
Chr07	irgsp1_rep	five_prime_UTR	15339013	15339119	.	+	.	Parent=Os07t0447800-01
Chr07	irgsp1_rep	CDS	15339120	15339126	.	+	0	Parent=Os07t0447800-01
Chr07	irgsp1_rep	CDS	15340726	15340792	.	+	2	Parent=Os07t0447800-01
Chr07	irgsp1_rep	CDS	15342093	15342276	.	+	1	Parent=Os07t0447800-01
Chr07	irgsp1_rep	CDS	15343351	15343403	.	+	0	Parent=Os07t0447800-01
Chr07	irgsp1_rep	CDS	15343697	15343785	.	+	1	Parent=Os07t0447800-01
Chr07	irgsp1_rep	CDS	15344849	15345085	.	+	2	Parent=Os07t0447800-01
Chr07	irgsp1_rep	CDS	15347202	15347266	.	+	2	Parent=Os07t0447800-01
Chr07	irgsp1_rep	CDS	15347353	15347413	.	+	0	Parent=Os07t0447800-01
Chr07	irgsp1_rep	CDS	15347484	15347601	.	+	2	Parent=Os07t0447800-01
Chr07	irgsp1_rep	CDS	15347672	15347753	.	+	1	Parent=Os07t0447800-01
Chr07	irgsp1_rep	CDS	15348714	15348786	.	+	0	Parent=Os07t0447800-01
Chr07	irgsp1_rep	CDS	15348855	15348916	.	+	2	Parent=Os07t0447800-01
Chr07	irgsp1_rep	CDS	15349014	15349109	.	+	0	Parent=Os07t0447800-01
Chr07	irgsp1_rep	CDS	15349524	15349678	.	+	0	Parent=Os07t0447800-01
Chr07	irgsp1_rep	CDS	15350285	15350381	.	+	1	Parent=Os07t0447800-01
Chr07	irgsp1_rep	CDS	15350505	15350582	.	+	0	Parent=Os07t0447800-01
Chr07	irgsp1_rep	CDS	15350664	15350771	.	+	0	Parent=Os07t0447800-01
Chr07	irgsp1_rep	three_prime_UTR	15350772	15351042	.	+	.	Parent=Os07t0447800-01
Chr07	irgsp1_rep	mRNA	15350517	15350814	.	-	.	ID=Os07t0447900-00;Name=Os07t0447900-00;Locus_id=Os07g0447900;Note=Non-protein coding transcript.;Transcript_evidence=BT016941 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0447900-00
Chr07	irgsp1_rep	exon	15350650	15350814	.	-	.	Parent=Os07t0447900-00
Chr07	irgsp1_rep	exon	15350517	15350570	.	-	.	Parent=Os07t0447900-00
Chr07	irgsp1_rep	mRNA	15358960	15360391	.	+	.	ID=Os07t0448100-01;Name=Os07t0448100-01;Locus_id=Os07g0448100;CGSNL Gene Symbol=PIP2%3B4;CGSNL Gene Name=PLASMA MEMBRANE INTRINSIC PROTEIN 2%3B4;Oryzabase Gene Symbol Synonym(s)=OsPIP2%3B4%2C PIP2.4%2C PIP2-4%2C OsPIP2-4;Oryzabase Gene Name Synonym(s)=Aquaporin PIP2.4%2C Aquaporin PIP2-4%2C Plasma membrane intrinsic protein 2-4;Note=Similar to Plasma membrane integral protein ZmPIP2-6.;Transcript_evidence=AK072632 (DDBJ%2C Best hit);ORF_evidence=Q8GRT8 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: water transport (GO:0006833),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Aquaporin (IPR012269),Major intrinsic protein%2C conserved site (IPR022357),Aquaporin-like (IPR023271);NIAS_FLcDNA=J023132K03;Oryzabase=8513;Expression=AK072632;TENOR=Os07t0448100-01;KEGG=Os07t0448100-01
Chr07	irgsp1_rep	five_prime_UTR	15358960	15359052	.	+	.	Parent=Os07t0448100-01
Chr07	irgsp1_rep	CDS	15359053	15359661	.	+	0	Parent=Os07t0448100-01
Chr07	irgsp1_rep	CDS	15359766	15359906	.	+	0	Parent=Os07t0448100-01
Chr07	irgsp1_rep	CDS	15360021	15360131	.	+	0	Parent=Os07t0448100-01
Chr07	irgsp1_rep	three_prime_UTR	15360132	15360391	.	+	.	Parent=Os07t0448100-01
Chr07	irgsp1_rep	mRNA	15359100	15360092	.	-	.	ID=Os07t0448150-00;Name=Os07t0448150-00;Locus_id=Os07g0448150;Note=Non-protein coding transcript.;Transcript_evidence=FP096444 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0448150-00
Chr07	irgsp1_rep	exon	15360017	15360092	.	-	.	Parent=Os07t0448150-00
Chr07	irgsp1_rep	exon	15359765	15359893	.	-	.	Parent=Os07t0448150-00
Chr07	irgsp1_rep	exon	15359100	15359660	.	-	.	Parent=Os07t0448150-00
Chr07	irgsp1_rep	mRNA	15369152	15370242	.	+	.	ID=Os07t0448200-00;Name=Os07t0448200-00;Locus_id=Os07g0448200;CGSNL Gene Symbol=PIP2%3B9;CGSNL Gene Name=PLASMA MEMBRANE INTRINSIC PROTEIN 2%3B9;Oryzabase Gene Symbol Synonym(s)=OsPIP2%3B9%2C PIP2.9%2C PIP2-9;Oryzabase Gene Name Synonym(s)=Probable aquaporin PIP2.9%2C Probable aquaporin PIP2-9%2C Plasma membrane intrinsic protein 2-9;Note=Similar to cDNA clone:J023132K03%2C full insert sequence.;Transcript_evidence=FP095152 (DDBJ);ORF_evidence=B7EL23 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: water transport (GO:0006833),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Aquaporin (IPR012269),Major intrinsic protein%2C conserved site (IPR022357),Aquaporin-like (IPR023271);Oryzabase=19066;TENOR=Os07t0448200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	15369152	15369733	.	+	0	Parent=Os07t0448200-00
Chr07	irgsp1_rep	CDS	15369817	15369957	.	+	0	Parent=Os07t0448200-00
Chr07	irgsp1_rep	CDS	15370057	15370167	.	+	0	Parent=Os07t0448200-00
Chr07	irgsp1_rep	three_prime_UTR	15370168	15370242	.	+	.	Parent=Os07t0448200-00
Chr07	irgsp1_rep	mRNA	15369182	15370133	.	-	.	ID=Os07t0448300-00;Name=Os07t0448300-00;Locus_id=Os07g0448300;Note=Hypothetical protein.;Transcript_evidence=FP096444 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0448300-00
Chr07	irgsp1_rep	five_prime_UTR	15370132	15370133	.	-	.	Parent=Os07t0448300-00
Chr07	irgsp1_rep	CDS	15370047	15370131	.	-	0	Parent=Os07t0448300-00
Chr07	irgsp1_rep	CDS	15369798	15369947	.	-	2	Parent=Os07t0448300-00
Chr07	irgsp1_rep	CDS	15369290	15369720	.	-	2	Parent=Os07t0448300-00
Chr07	irgsp1_rep	three_prime_UTR	15369182	15369289	.	-	.	Parent=Os07t0448300-00
Chr07	irgsp1_rep	mRNA	15376916	15378289	.	+	.	ID=Os07t0448400-01;Name=Os07t0448400-01;Locus_id=Os07g0448400;CGSNL Gene Symbol=PIP2%3B5;CGSNL Gene Name=PLASMA MEMBRANE INTRINSIC PROTEIN 2%3B5;Oryzabase Gene Symbol Synonym(s)=OsPIP2%3B5%2C PIP2-5;Oryzabase Gene Name Synonym(s)=Aquaporin PIP2-5%2C Plasma membrane intrinsic protein 2-5;Note=Similar to Aquaporin PIP2-5.;Transcript_evidence=AK107700 (DDBJ%2C Best hit);ORF_evidence=Q8GRI8 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Aquaporin-like (IPR023271);NIAS_FLcDNA=002-132-C10;Oryzabase=7310;TENOR=Os07t0448400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	15376916	15376916	.	+	.	Parent=Os07t0448400-01
Chr07	irgsp1_rep	CDS	15376917	15376987	.	+	0	Parent=Os07t0448400-01
Chr07	irgsp1_rep	CDS	15377517	15377601	.	+	1	Parent=Os07t0448400-01
Chr07	irgsp1_rep	CDS	15377697	15377837	.	+	0	Parent=Os07t0448400-01
Chr07	irgsp1_rep	CDS	15377970	15378080	.	+	0	Parent=Os07t0448400-01
Chr07	irgsp1_rep	three_prime_UTR	15378081	15378289	.	+	.	Parent=Os07t0448400-01
Chr07	irgsp1_rep	mRNA	15377040	15378085	.	-	.	ID=Os07t0448600-00;Name=Os07t0448600-00;Locus_id=Os07g0448600;Note=Hypothetical protein.;Transcript_evidence=FP096444 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0448600-00
Chr07	irgsp1_rep	five_prime_UTR	15377996	15378085	.	-	.	Parent=Os07t0448600-00
Chr07	irgsp1_rep	CDS	15377959	15377995	.	-	0	Parent=Os07t0448600-00
Chr07	irgsp1_rep	CDS	15377696	15377824	.	-	2	Parent=Os07t0448600-00
Chr07	irgsp1_rep	CDS	15377040	15377600	.	-	2	Parent=Os07t0448600-00
Chr07	irgsp1_rep	mRNA	15406442	15409748	.	+	.	ID=Os07t0448800-01;Name=Os07t0448800-01;Locus_id=Os07g0448800;RAP-DB Gene Symbol Synonym(s)=OsPIP2%3B1;RAP-DB Gene Name Synonym(s)=plasma membrane intrinsic protein 2%3B1;CGSNL Gene Symbol=PIP2A;CGSNL Gene Name=PLASMA MEMBRANE INTRINSIC PROTEIN 2A;Oryzabase Gene Symbol Synonym(s)=OsPIP2a%2C PIP2-1%2C PIP2a%2C PIP2.1%2C OsPIP2%3B1%2C PIP2%3B1%2C OsPIP2-1;Oryzabase Gene Name Synonym(s)=Probable aquaporin PIP2-1%2C Plasma membrane intrinsic protein 2-1%2C Plasma membrane intrinsic protein 2a;Note=Aquaporin%2C Plasma membrane intrinsic protein%2C Regulation of water transport and plant growth;Transcript_evidence=AK072519,AK103938,AK103970,AK119656;ORF_evidence=Q8H5N9;GO=Biological Process: transmembrane transport (GO:0055085),Molecular Function: channel activity (GO:0015267),Cellular Component: membrane (GO:0016020);InterPro=Aquaporin-like (IPR023271),Major intrinsic protein (IPR000425),Major intrinsic protein%2C conserved site (IPR022357);NIAS_FLcDNA=J023128K12,001-013-G03,001-016-B05,002-130-H04;Manual Curation=March 22%2C 2019;Literature_PMID=30889480;Oryzabase=6256;TENOR=Os07t0448800-01
Chr07	irgsp1_rep	five_prime_UTR	15406442	15406550	.	+	.	Parent=Os07t0448800-01
Chr07	irgsp1_rep	CDS	15406551	15407168	.	+	0	Parent=Os07t0448800-01
Chr07	irgsp1_rep	CDS	15409055	15409195	.	+	0	Parent=Os07t0448800-01
Chr07	irgsp1_rep	CDS	15409320	15409433	.	+	0	Parent=Os07t0448800-01
Chr07	irgsp1_rep	three_prime_UTR	15409434	15409748	.	+	.	Parent=Os07t0448800-01
Chr07	irgsp1_rep	mRNA	15409541	15409748	.	+	.	ID=Os07t0448800-02;Name=Os07t0448800-02;Locus_id=Os07g0448800;CGSNL Gene Symbol=PIP2A;CGSNL Gene Name=PLASMA MEMBRANE INTRINSIC PROTEIN 2A;Oryzabase Gene Symbol Synonym(s)=OsPIP2a%2C PIP2-1%2C PIP2a%2C PIP2.1%2C OsPIP2%3B1%2C PIP2%3B1%2C OsPIP2-1;Oryzabase Gene Name Synonym(s)=Probable aquaporin PIP2-1%2C Plasma membrane intrinsic protein 2-1%2C Plasma membrane intrinsic protein 2a;Note=Non-protein coding transcript.;Transcript_evidence=AK060712 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-031-C11;Oryzabase=6256;TENOR=Os07t0448800-02
Chr07	irgsp1_rep	exon	15409541	15409748	.	+	.	Parent=Os07t0448800-02
Chr07	irgsp1_rep	mRNA	15421991	15425210	.	-	.	ID=Os07t0449100-01;Name=Os07t0449100-01;Locus_id=Os07g0449100;Note=Similar to Light induced protein like.;Transcript_evidence=AK062392 (DDBJ%2C Best hit);ORF_evidence=B4FWA7 (UniProt);InterPro=Uncharacterised protein family UPF0041 (IPR005336);NIAS_FLcDNA=001-102-D01;Expression=AK062392;TENOR=Os07t0449100-01;KEGG=Os07t0449100-01
Chr07	irgsp1_rep	five_prime_UTR	15425055	15425210	.	-	.	Parent=Os07t0449100-01
Chr07	irgsp1_rep	five_prime_UTR	15423590	15423648	.	-	.	Parent=Os07t0449100-01
Chr07	irgsp1_rep	CDS	15423538	15423589	.	-	0	Parent=Os07t0449100-01
Chr07	irgsp1_rep	CDS	15423065	15423163	.	-	2	Parent=Os07t0449100-01
Chr07	irgsp1_rep	CDS	15422891	15422943	.	-	2	Parent=Os07t0449100-01
Chr07	irgsp1_rep	CDS	15422344	15422417	.	-	0	Parent=Os07t0449100-01
Chr07	irgsp1_rep	CDS	15422210	15422261	.	-	1	Parent=Os07t0449100-01
Chr07	irgsp1_rep	three_prime_UTR	15421991	15422209	.	-	.	Parent=Os07t0449100-01
Chr07	irgsp1_rep	mRNA	15440889	15442180	.	+	.	ID=Os07t0449700-01;Name=Os07t0449700-01;Locus_id=Os07g0449700;RAP-DB Gene Symbol Synonym(s)=RR7%2C rr7%2C OsRR7%2C Rra5%2C OsRRA5;RAP-DB Gene Name Synonym(s)=A-TYPE RESPONSE REGULATOR 7%2C A-TYPE response regulator 7%2C Type A response regulator 7%2C A-type RR 5;CGSNL Gene Symbol=RR7;CGSNL Gene Name=A-TYPE RESPONSE REGULATOR 7;Oryzabase Gene Symbol Synonym(s)=rr7%2C OsRR7%2C Rra5%2C OsRRA5;Oryzabase Gene Name Synonym(s)=A-TYPE response regulator 7%2C Type A response regulator 7%2C A-type RR 5%2C ARABIDOPSIS- RESPONSE-REGULATOR5;Note=A-type response regulator%2C Cytokinin signaling;Transcript_evidence=AB249657 (Genbank),BR000316 (Genbank);ORF_evidence=Q8H5N4 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: two-component response regulator activity (GO:0000156);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),CheY-like superfamily (IPR011006);Manual Curation=April 23%2C 2010;Literature_PMID=16919402,16472405,17293362;Oryzabase=8164;TENOR=Os07t0449700-01
Chr07	irgsp1_rep	CDS	15440889	15441237	.	+	0	Parent=Os07t0449700-01
Chr07	irgsp1_rep	CDS	15441405	15441439	.	+	2	Parent=Os07t0449700-01
Chr07	irgsp1_rep	CDS	15441527	15441604	.	+	0	Parent=Os07t0449700-01
Chr07	irgsp1_rep	CDS	15441907	15441977	.	+	0	Parent=Os07t0449700-01
Chr07	irgsp1_rep	CDS	15442093	15442180	.	+	1	Parent=Os07t0449700-01
Chr07	irgsp1_rep	mRNA	15448861	15451411	.	+	.	ID=Os07t0450000-01;Name=Os07t0450000-01;Locus_id=Os07g0450000;Oryzabase Gene Name Synonym(s)=Ribosomal protein L36a.e;Note=Similar to 60S ribosomal protein L44.;Transcript_evidence=AK121702 (DDBJ%2C Best hit);ORF_evidence=NP_001151192.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L44e (IPR000552),Ribosomal protein%2C zinc-binding domain (IPR011332);NIAS_FLcDNA=J033073H17;Oryzabase=17679;Expression=AK121702;TENOR=Os07t0450000-01;KEGG=Os07t0450000-01
Chr07	irgsp1_rep	five_prime_UTR	15448861	15448958	.	+	.	Parent=Os07t0450000-01
Chr07	irgsp1_rep	CDS	15448959	15448961	.	+	0	Parent=Os07t0450000-01
Chr07	irgsp1_rep	CDS	15450572	15450751	.	+	0	Parent=Os07t0450000-01
Chr07	irgsp1_rep	CDS	15450865	15450939	.	+	0	Parent=Os07t0450000-01
Chr07	irgsp1_rep	CDS	15451045	15451104	.	+	0	Parent=Os07t0450000-01
Chr07	irgsp1_rep	three_prime_UTR	15451105	15451411	.	+	.	Parent=Os07t0450000-01
Chr07	irgsp1_rep	mRNA	15448883	15451411	.	+	.	ID=Os07t0450000-02;Name=Os07t0450000-02;Locus_id=Os07g0450000;Oryzabase Gene Name Synonym(s)=Ribosomal protein L36a.e;Note=Similar to 60S ribosomal protein L44.;Transcript_evidence=AK063789 (DDBJ%2C Best hit);ORF_evidence=NP_001151192.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L44e (IPR000552),Ribosomal protein%2C zinc-binding domain (IPR011332);NIAS_FLcDNA=001-121-E03;Oryzabase=17679;Expression=AK063789;TENOR=Os07t0450000-02;KEGG=Os07t0450000-02
Chr07	irgsp1_rep	five_prime_UTR	15448883	15448958	.	+	.	Parent=Os07t0450000-02
Chr07	irgsp1_rep	CDS	15448959	15448961	.	+	0	Parent=Os07t0450000-02
Chr07	irgsp1_rep	CDS	15450572	15450751	.	+	0	Parent=Os07t0450000-02
Chr07	irgsp1_rep	CDS	15450865	15450939	.	+	0	Parent=Os07t0450000-02
Chr07	irgsp1_rep	CDS	15451045	15451104	.	+	0	Parent=Os07t0450000-02
Chr07	irgsp1_rep	three_prime_UTR	15451105	15451411	.	+	.	Parent=Os07t0450000-02
Chr07	irgsp1_rep	mRNA	15458182	15460126	.	-	.	ID=Os07t0450100-01;Name=Os07t0450100-01;Locus_id=Os07g0450100;Note=Hypothetical conserved gene.;Transcript_evidence=AK241149 (DDBJ%2C Best hit);ORF_evidence=B9FX11 (UniProt);NIAS_FLcDNA=J065112O07;TENOR=Os07t0450100-01;KEGG=Os07t0450100-01
Chr07	irgsp1_rep	five_prime_UTR	15460081	15460126	.	-	.	Parent=Os07t0450100-01
Chr07	irgsp1_rep	CDS	15459719	15460080	.	-	0	Parent=Os07t0450100-01
Chr07	irgsp1_rep	CDS	15459563	15459614	.	-	1	Parent=Os07t0450100-01
Chr07	irgsp1_rep	three_prime_UTR	15458182	15459562	.	-	.	Parent=Os07t0450100-01
Chr07	irgsp1_rep	mRNA	15542094	15545440	.	-	.	ID=Os07t0451101-00;Name=Os07t0451101-00;Locus_id=Os07g0451101;Note=Hypothetical conserved gene.;Transcript_evidence=CT833731 (DDBJ%2C Best hit);ORF_evidence=Q5VMZ9 (UniProt);TENOR=Os07t0451101-00;KEGG=Os07t0451101-00
Chr07	irgsp1_rep	five_prime_UTR	15545440	15545440	.	-	.	Parent=Os07t0451101-00
Chr07	irgsp1_rep	CDS	15545323	15545439	.	-	0	Parent=Os07t0451101-00
Chr07	irgsp1_rep	CDS	15544994	15545245	.	-	0	Parent=Os07t0451101-00
Chr07	irgsp1_rep	CDS	15544905	15544916	.	-	0	Parent=Os07t0451101-00
Chr07	irgsp1_rep	three_prime_UTR	15544806	15544904	.	-	.	Parent=Os07t0451101-00
Chr07	irgsp1_rep	three_prime_UTR	15543716	15543784	.	-	.	Parent=Os07t0451101-00
Chr07	irgsp1_rep	three_prime_UTR	15542094	15542319	.	-	.	Parent=Os07t0451101-00
Chr07	irgsp1_rep	mRNA	15560312	15561800	.	-	.	ID=Os07t0451201-00;Name=Os07t0451201-00;Locus_id=Os07g0451201;Note=Hypothetical protein.;Transcript_evidence=AK357549 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0451201-00
Chr07	irgsp1_rep	five_prime_UTR	15561800	15561800	.	-	.	Parent=Os07t0451201-00
Chr07	irgsp1_rep	CDS	15561176	15561799	.	-	0	Parent=Os07t0451201-00
Chr07	irgsp1_rep	three_prime_UTR	15560312	15561175	.	-	.	Parent=Os07t0451201-00
Chr07	irgsp1_rep	mRNA	15560341	15561945	.	+	.	ID=Os07t0451300-01;Name=Os07t0451300-01;Locus_id=Os07g0451300;Note=CytoChrome P450 family protein.;Transcript_evidence=AK111468 (DDBJ%2C Best hit);ORF_evidence=B8B5Q4 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=002-183-D12;Expression=AK111468;TENOR=Os07t0451300-01;KEGG=Os07t0451300-01
Chr07	irgsp1_rep	five_prime_UTR	15560341	15560350	.	+	.	Parent=Os07t0451300-01
Chr07	irgsp1_rep	CDS	15560351	15561883	.	+	0	Parent=Os07t0451300-01
Chr07	irgsp1_rep	three_prime_UTR	15561884	15561945	.	+	.	Parent=Os07t0451300-01
Chr07	irgsp1_rep	mRNA	15580083	15584254	.	+	.	ID=Os07t0452100-00;Name=Os07t0452100-00;Locus_id=Os07g0452100;Oryzabase Gene Symbol Synonym(s)=alpha-Gal II;Oryzabase Gene Name Synonym(s)=alpha-galactosidase II;Note=Similar to Alpha-galactosidase.;Transcript_evidence=BT033680 (DDBJ);ORF_evidence=B6TNN5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C clan GH-D (IPR000111),Glycoside hydrolase%2C family 27 (IPR002241),Glycosyl hydrolase%2C family 13%2C all-beta (IPR013780),Aldolase-type TIM barrel (IPR013785),Glycoside hydrolase%2C superfamily (IPR017853);Oryzabase=20531;TENOR=Os07t0452100-00;KEGG=Os07t0452100-00
Chr07	irgsp1_rep	CDS	15580083	15580252	.	+	0	Parent=Os07t0452100-00
Chr07	irgsp1_rep	CDS	15580388	15580446	.	+	1	Parent=Os07t0452100-00
Chr07	irgsp1_rep	CDS	15581386	15581442	.	+	2	Parent=Os07t0452100-00
Chr07	irgsp1_rep	CDS	15581552	15581584	.	+	2	Parent=Os07t0452100-00
Chr07	irgsp1_rep	CDS	15581742	15581847	.	+	2	Parent=Os07t0452100-00
Chr07	irgsp1_rep	CDS	15581941	15582016	.	+	1	Parent=Os07t0452100-00
Chr07	irgsp1_rep	CDS	15582225	15582283	.	+	0	Parent=Os07t0452100-00
Chr07	irgsp1_rep	CDS	15582382	15582447	.	+	1	Parent=Os07t0452100-00
Chr07	irgsp1_rep	CDS	15582951	15583034	.	+	1	Parent=Os07t0452100-00
Chr07	irgsp1_rep	CDS	15583187	15583251	.	+	1	Parent=Os07t0452100-00
Chr07	irgsp1_rep	CDS	15583337	15583419	.	+	2	Parent=Os07t0452100-00
Chr07	irgsp1_rep	CDS	15583528	15583618	.	+	0	Parent=Os07t0452100-00
Chr07	irgsp1_rep	CDS	15583721	15583773	.	+	2	Parent=Os07t0452100-00
Chr07	irgsp1_rep	CDS	15583864	15584007	.	+	0	Parent=Os07t0452100-00
Chr07	irgsp1_rep	CDS	15584141	15584254	.	+	0	Parent=Os07t0452100-00
Chr07	irgsp1_rep	mRNA	15595751	15600607	.	+	.	ID=Os07t0452400-01;Name=Os07t0452400-01;Locus_id=Os07g0452400;Note=3'-5' exonuclease domain containing protein.;Transcript_evidence=AK287638 (DDBJ%2C Best hit);ORF_evidence=NP_197822.1 (RefSeq);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: 3'-5' exonuclease activity (GO:0008408);InterPro=3&apos%3B-5&apos%3B exonuclease (IPR002562),Protein of unknown function DUF82 (IPR002782),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J065077M20;TENOR=Os07t0452400-01;KEGG=Os07t0452400-01
Chr07	irgsp1_rep	five_prime_UTR	15595751	15595794	.	+	.	Parent=Os07t0452400-01
Chr07	irgsp1_rep	CDS	15595795	15596253	.	+	0	Parent=Os07t0452400-01
Chr07	irgsp1_rep	CDS	15596475	15596606	.	+	0	Parent=Os07t0452400-01
Chr07	irgsp1_rep	CDS	15597345	15597468	.	+	0	Parent=Os07t0452400-01
Chr07	irgsp1_rep	CDS	15598631	15598944	.	+	2	Parent=Os07t0452400-01
Chr07	irgsp1_rep	CDS	15599117	15599193	.	+	0	Parent=Os07t0452400-01
Chr07	irgsp1_rep	CDS	15599295	15599430	.	+	1	Parent=Os07t0452400-01
Chr07	irgsp1_rep	CDS	15599931	15600134	.	+	0	Parent=Os07t0452400-01
Chr07	irgsp1_rep	CDS	15600209	15600268	.	+	0	Parent=Os07t0452400-01
Chr07	irgsp1_rep	three_prime_UTR	15600269	15600607	.	+	.	Parent=Os07t0452400-01
Chr07	irgsp1_rep	mRNA	15603579	15604564	.	-	.	ID=Os07t0452500-01;Name=Os07t0452500-01;Locus_id=Os07g0452500;Note=Similar to ORMDL family protein.;Transcript_evidence=AK109311 (DDBJ%2C Best hit);ORF_evidence=B6TIF4 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=ORMDL (IPR007203);NIAS_FLcDNA=002-188-F04;Expression=AK109311;TENOR=Os07t0452500-01;KEGG=Os07t0452500-01
Chr07	irgsp1_rep	five_prime_UTR	15604446	15604564	.	-	.	Parent=Os07t0452500-01
Chr07	irgsp1_rep	CDS	15604191	15604445	.	-	0	Parent=Os07t0452500-01
Chr07	irgsp1_rep	three_prime_UTR	15603579	15604190	.	-	.	Parent=Os07t0452500-01
Chr07	irgsp1_rep	mRNA	15602028	15604561	.	-	.	ID=Os07t0452500-02;Name=Os07t0452500-02;Locus_id=Os07g0452500;Note=ORMDL family protein.;Transcript_evidence=AK061880 (DDBJ%2C Best hit),AK099046 (DDBJ%2C Best hit);ORF_evidence=B6TNF5 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=ORMDL (IPR007203);NIAS_FLcDNA=001-041-E11,J013146B09;Expression=AK061880;TENOR=Os07t0452500-02;KEGG=Os07t0452500-02
Chr07	irgsp1_rep	five_prime_UTR	15604446	15604561	.	-	.	Parent=Os07t0452500-02
Chr07	irgsp1_rep	CDS	15604242	15604445	.	-	0	Parent=Os07t0452500-02
Chr07	irgsp1_rep	CDS	15603153	15603304	.	-	0	Parent=Os07t0452500-02
Chr07	irgsp1_rep	CDS	15602357	15602495	.	-	1	Parent=Os07t0452500-02
Chr07	irgsp1_rep	three_prime_UTR	15602028	15602356	.	-	.	Parent=Os07t0452500-02
Chr07	irgsp1_rep	mRNA	15614582	15616817	.	+	.	ID=Os07t0452600-00;Name=Os07t0452600-00;Locus_id=Os07g0452600;Note=Hypothetical conserved gene.;Transcript_evidence=BT061777 (DDBJ);ORF_evidence=B6TG31 (UniProt);TENOR=Os07t0452600-00;KEGG=Os07t0452600-00
Chr07	irgsp1_rep	CDS	15614582	15615061	.	+	0	Parent=Os07t0452600-00
Chr07	irgsp1_rep	CDS	15616074	15616169	.	+	0	Parent=Os07t0452600-00
Chr07	irgsp1_rep	CDS	15616242	15616290	.	+	0	Parent=Os07t0452600-00
Chr07	irgsp1_rep	CDS	15616689	15616780	.	+	2	Parent=Os07t0452600-00
Chr07	irgsp1_rep	three_prime_UTR	15616781	15616817	.	+	.	Parent=Os07t0452600-00
Chr07	irgsp1_rep	mRNA	15618430	15622542	.	-	.	ID=Os07t0452700-01;Name=Os07t0452700-01;Locus_id=Os07g0452700;Note=Hypothetical conserved gene.;Transcript_evidence=AK120064 (DDBJ%2C Best hit);ORF_evidence=B9FX15 (UniProt);NIAS_FLcDNA=J013002B02;TENOR=Os07t0452700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	15621836	15622542	.	-	.	Parent=Os07t0452700-01
Chr07	irgsp1_rep	five_prime_UTR	15619237	15621713	.	-	.	Parent=Os07t0452700-01
Chr07	irgsp1_rep	CDS	15619126	15619236	.	-	0	Parent=Os07t0452700-01
Chr07	irgsp1_rep	CDS	15618884	15618953	.	-	0	Parent=Os07t0452700-01
Chr07	irgsp1_rep	CDS	15618727	15618776	.	-	2	Parent=Os07t0452700-01
Chr07	irgsp1_rep	three_prime_UTR	15618430	15618726	.	-	.	Parent=Os07t0452700-01
Chr07	irgsp1_rep	mRNA	15618404	15621910	.	-	.	ID=Os07t0452700-02;Name=Os07t0452700-02;Locus_id=Os07g0452700;Note=Conserved hypothetical protein.;Transcript_evidence=AK101381 (DDBJ%2C Best hit);ORF_evidence=B9FX15 (UniProt);NIAS_FLcDNA=J033036E16;TENOR=Os07t0452700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	15621899	15621910	.	-	.	Parent=Os07t0452700-02
Chr07	irgsp1_rep	CDS	15621836	15621898	.	-	0	Parent=Os07t0452700-02
Chr07	irgsp1_rep	CDS	15621591	15621713	.	-	0	Parent=Os07t0452700-02
Chr07	irgsp1_rep	three_prime_UTR	15618884	15621590	.	-	.	Parent=Os07t0452700-02
Chr07	irgsp1_rep	three_prime_UTR	15618404	15618776	.	-	.	Parent=Os07t0452700-02
Chr07	irgsp1_rep	mRNA	15618595	15620084	.	-	.	ID=Os07t0452700-03;Name=Os07t0452700-03;Locus_id=Os07g0452700;Note=Hypothetical conserved gene.;Transcript_evidence=AK062129 (DDBJ%2C Best hit);ORF_evidence=B9FX15 (UniProt);NIAS_FLcDNA=001-045-E02;Expression=AK062129;TENOR=Os07t0452700-03;KEGG=Os07t0452700-03
Chr07	irgsp1_rep	five_prime_UTR	15619237	15620084	.	-	.	Parent=Os07t0452700-03
Chr07	irgsp1_rep	CDS	15619126	15619236	.	-	0	Parent=Os07t0452700-03
Chr07	irgsp1_rep	CDS	15618884	15618953	.	-	0	Parent=Os07t0452700-03
Chr07	irgsp1_rep	CDS	15618727	15618776	.	-	2	Parent=Os07t0452700-03
Chr07	irgsp1_rep	three_prime_UTR	15618595	15618726	.	-	.	Parent=Os07t0452700-03
Chr07	irgsp1_rep	mRNA	15623368	15626179	.	-	.	ID=Os07t0452801-01;Name=Os07t0452801-01;Locus_id=Os07g0452801;Note=Conserved hypothetical protein.;Transcript_evidence=AK242593 (DDBJ%2C Best hit);ORF_evidence=NP_001175181.1 (RefSeq);NIAS_FLcDNA=J090012G17;TENOR=Os07t0452801-01;KEGG=Os07t0452801-01
Chr07	irgsp1_rep	five_prime_UTR	15625593	15626179	.	-	.	Parent=Os07t0452801-01
Chr07	irgsp1_rep	five_prime_UTR	15625065	15625428	.	-	.	Parent=Os07t0452801-01
Chr07	irgsp1_rep	CDS	15624819	15625064	.	-	0	Parent=Os07t0452801-01
Chr07	irgsp1_rep	three_prime_UTR	15623368	15624818	.	-	.	Parent=Os07t0452801-01
Chr07	irgsp1_rep	mRNA	15634146	15637147	.	+	.	ID=Os07t0452950-01;Name=Os07t0452950-01;Locus_id=Os07g0452950;Note=Hypothetical conserved gene.;Transcript_evidence=AK287538 (DDBJ%2C Best hit);ORF_evidence=A2YKX1 (UniProt);NIAS_FLcDNA=J065007D13;TENOR=Os07t0452950-01;KEGG=Os07t0452950-01
Chr07	irgsp1_rep	five_prime_UTR	15634146	15634369	.	+	.	Parent=Os07t0452950-01
Chr07	irgsp1_rep	CDS	15634370	15634502	.	+	0	Parent=Os07t0452950-01
Chr07	irgsp1_rep	CDS	15636188	15636280	.	+	2	Parent=Os07t0452950-01
Chr07	irgsp1_rep	CDS	15636900	15636910	.	+	2	Parent=Os07t0452950-01
Chr07	irgsp1_rep	three_prime_UTR	15636911	15637147	.	+	.	Parent=Os07t0452950-01
Chr07	irgsp1_rep	mRNA	15649283	15652158	.	+	.	ID=Os07t0453132-01;Name=Os07t0453132-01;Locus_id=Os07g0453132;Note=Conserved hypothetical protein.;Transcript_evidence=AK241450 (DDBJ%2C Best hit);ORF_evidence=NP_001174322.1 (RefSeq);NIAS_FLcDNA=J065163I05;TENOR=Os07t0453132-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	15649283	15649389	.	+	.	Parent=Os07t0453132-01
Chr07	irgsp1_rep	CDS	15649390	15649509	.	+	0	Parent=Os07t0453132-01
Chr07	irgsp1_rep	three_prime_UTR	15649510	15649539	.	+	.	Parent=Os07t0453132-01
Chr07	irgsp1_rep	three_prime_UTR	15649615	15649724	.	+	.	Parent=Os07t0453132-01
Chr07	irgsp1_rep	three_prime_UTR	15650600	15650663	.	+	.	Parent=Os07t0453132-01
Chr07	irgsp1_rep	three_prime_UTR	15651889	15652158	.	+	.	Parent=Os07t0453132-01
Chr07	irgsp1_rep	mRNA	15721894	15723077	.	+	.	ID=Os07t0454100-01;Name=Os07t0454100-01;Locus_id=Os07g0454100;Note=Conserved hypothetical protein.;Transcript_evidence=AK060184 (DDBJ%2C Best hit);ORF_evidence=B9FX18 (UniProt);NIAS_FLcDNA=001-001-C08;TENOR=Os07t0454100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	15721894	15722115	.	+	0	Parent=Os07t0454100-01
Chr07	irgsp1_rep	CDS	15722193	15722255	.	+	0	Parent=Os07t0454100-01
Chr07	irgsp1_rep	CDS	15722332	15722391	.	+	0	Parent=Os07t0454100-01
Chr07	irgsp1_rep	CDS	15722478	15722554	.	+	0	Parent=Os07t0454100-01
Chr07	irgsp1_rep	CDS	15722645	15722780	.	+	1	Parent=Os07t0454100-01
Chr07	irgsp1_rep	three_prime_UTR	15722781	15723077	.	+	.	Parent=Os07t0454100-01
Chr07	irgsp1_rep	mRNA	15726287	15730079	.	+	.	ID=Os07t0454200-01;Name=Os07t0454200-01;Locus_id=Os07g0454200;Note=Similar to Hydroxyproline-rich glycoprotein gas29p precursor.;Transcript_evidence=AK066460 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013068O04;Expression=AK066460;TENOR=Os07t0454200-01;KEGG=Os07t0454200-01
Chr07	irgsp1_rep	five_prime_UTR	15726287	15728832	.	+	.	Parent=Os07t0454200-01
Chr07	irgsp1_rep	CDS	15728833	15729189	.	+	0	Parent=Os07t0454200-01
Chr07	irgsp1_rep	three_prime_UTR	15729190	15730079	.	+	.	Parent=Os07t0454200-01
Chr07	irgsp1_rep	mRNA	15726341	15728745	.	+	.	ID=Os07t0454200-02;Name=Os07t0454200-02;Locus_id=Os07g0454200;Note=Hypothetical protein.;Transcript_evidence=AK067783 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013119L12;TENOR=Os07t0454200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	15726341	15726829	.	+	.	Parent=Os07t0454200-02
Chr07	irgsp1_rep	CDS	15726830	15727147	.	+	0	Parent=Os07t0454200-02
Chr07	irgsp1_rep	three_prime_UTR	15727148	15727276	.	+	.	Parent=Os07t0454200-02
Chr07	irgsp1_rep	three_prime_UTR	15727974	15728745	.	+	.	Parent=Os07t0454200-02
Chr07	irgsp1_rep	mRNA	15732952	15745599	.	-	.	ID=Os07t0454400-01;Name=Os07t0454400-01;Locus_id=Os07g0454400;Note=Conserved hypothetical protein.;Transcript_evidence=AK120108 (DDBJ%2C Best hit);ORF_evidence=Q7EY41 (UniProt);NIAS_FLcDNA=J013023O16;TENOR=Os07t0454400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	15745598	15745599	.	-	.	Parent=Os07t0454400-01
Chr07	irgsp1_rep	CDS	15745437	15745597	.	-	0	Parent=Os07t0454400-01
Chr07	irgsp1_rep	CDS	15743717	15743843	.	-	1	Parent=Os07t0454400-01
Chr07	irgsp1_rep	CDS	15743518	15743578	.	-	0	Parent=Os07t0454400-01
Chr07	irgsp1_rep	CDS	15742376	15742461	.	-	2	Parent=Os07t0454400-01
Chr07	irgsp1_rep	three_prime_UTR	15742368	15742375	.	-	.	Parent=Os07t0454400-01
Chr07	irgsp1_rep	three_prime_UTR	15739961	15741714	.	-	.	Parent=Os07t0454400-01
Chr07	irgsp1_rep	three_prime_UTR	15739740	15739871	.	-	.	Parent=Os07t0454400-01
Chr07	irgsp1_rep	three_prime_UTR	15739540	15739606	.	-	.	Parent=Os07t0454400-01
Chr07	irgsp1_rep	three_prime_UTR	15739390	15739429	.	-	.	Parent=Os07t0454400-01
Chr07	irgsp1_rep	three_prime_UTR	15739129	15739201	.	-	.	Parent=Os07t0454400-01
Chr07	irgsp1_rep	three_prime_UTR	15738991	15739053	.	-	.	Parent=Os07t0454400-01
Chr07	irgsp1_rep	three_prime_UTR	15738400	15738477	.	-	.	Parent=Os07t0454400-01
Chr07	irgsp1_rep	three_prime_UTR	15737647	15737819	.	-	.	Parent=Os07t0454400-01
Chr07	irgsp1_rep	three_prime_UTR	15737438	15737484	.	-	.	Parent=Os07t0454400-01
Chr07	irgsp1_rep	three_prime_UTR	15737130	15737349	.	-	.	Parent=Os07t0454400-01
Chr07	irgsp1_rep	three_prime_UTR	15736700	15737060	.	-	.	Parent=Os07t0454400-01
Chr07	irgsp1_rep	three_prime_UTR	15736236	15736377	.	-	.	Parent=Os07t0454400-01
Chr07	irgsp1_rep	three_prime_UTR	15736035	15736143	.	-	.	Parent=Os07t0454400-01
Chr07	irgsp1_rep	three_prime_UTR	15735853	15735933	.	-	.	Parent=Os07t0454400-01
Chr07	irgsp1_rep	three_prime_UTR	15734879	15735229	.	-	.	Parent=Os07t0454400-01
Chr07	irgsp1_rep	three_prime_UTR	15734483	15734735	.	-	.	Parent=Os07t0454400-01
Chr07	irgsp1_rep	three_prime_UTR	15733827	15734069	.	-	.	Parent=Os07t0454400-01
Chr07	irgsp1_rep	three_prime_UTR	15733618	15733738	.	-	.	Parent=Os07t0454400-01
Chr07	irgsp1_rep	three_prime_UTR	15732952	15733227	.	-	.	Parent=Os07t0454400-01
Chr07	irgsp1_rep	mRNA	15753902	15755787	.	+	.	ID=Os07t0454700-01;Name=Os07t0454700-01;Locus_id=Os07g0454700;Note=Similar to Trafficking protein particle complex subunit 4 (Synbindin) (TRS23 homolog).;Transcript_evidence=AK058258 (DDBJ%2C Best hit);ORF_evidence=B6U8Z1 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888),Cellular Component: cis-Golgi network (GO:0005801);InterPro=Sybindin-like protein (IPR007233),Longin-like (IPR011012);NIAS_FLcDNA=001-012-E11;Expression=AK058258;TENOR=Os07t0454700-01;KEGG=Os07t0454700-01
Chr07	irgsp1_rep	five_prime_UTR	15753902	15753914	.	+	.	Parent=Os07t0454700-01
Chr07	irgsp1_rep	CDS	15753915	15753980	.	+	0	Parent=Os07t0454700-01
Chr07	irgsp1_rep	CDS	15754060	15754228	.	+	0	Parent=Os07t0454700-01
Chr07	irgsp1_rep	CDS	15755407	15755603	.	+	2	Parent=Os07t0454700-01
Chr07	irgsp1_rep	three_prime_UTR	15755604	15755787	.	+	.	Parent=Os07t0454700-01
Chr07	irgsp1_rep	mRNA	15769883	15787386	.	-	.	ID=Os07t0455100-01;Name=Os07t0455100-01;Locus_id=Os07g0455100;RAP-DB Gene Symbol Synonym(s)=S7;RAP-DB Gene Name Synonym(s)=HYBRID STERILITY 7%2C Hybrid sterility 7;CGSNL Gene Symbol=S7;CGSNL Gene Name=HYBRID STERILITY 7;Oryzabase Gene Symbol Synonym(s)=S7;Oryzabase Gene Name Synonym(s)=Hybrid sterility7%2C Hybrid sterility 7%2C Hybrid sterility-7;Note=Tetratricopeptide repeat domain containing protein%2C Control of Aus-japonica/indica hybrid female sterility;Transcript_evidence=Inferred from literature;ORF_evidence=A0A0P0X610;GO=Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical domain (IPR011990),Tetratricopeptide repeat-containing domain (IPR013026),Tetratricopeptide repeat (IPR019734);Manual Curation=June 21%2C 2017;Literature_PMID=27182946;Oryzabase=799;TENOR=Os07t0455100-00;Subcellular location=endoplasmic reticulum (GO:0005783), nucleus (GO:0005634)
Chr07	irgsp1_rep	five_prime_UTR	15787358	15787386	.	-	.	Parent=Os07t0455100-01
Chr07	irgsp1_rep	CDS	15786951	15787357	.	-	0	Parent=Os07t0455100-01
Chr07	irgsp1_rep	CDS	15784826	15784976	.	-	1	Parent=Os07t0455100-01
Chr07	irgsp1_rep	CDS	15783577	15783887	.	-	0	Parent=Os07t0455100-01
Chr07	irgsp1_rep	CDS	15782777	15782858	.	-	1	Parent=Os07t0455100-01
Chr07	irgsp1_rep	CDS	15781545	15781860	.	-	0	Parent=Os07t0455100-01
Chr07	irgsp1_rep	CDS	15779516	15779574	.	-	2	Parent=Os07t0455100-01
Chr07	irgsp1_rep	CDS	15779151	15779240	.	-	0	Parent=Os07t0455100-01
Chr07	irgsp1_rep	CDS	15776398	15776489	.	-	0	Parent=Os07t0455100-01
Chr07	irgsp1_rep	CDS	15776206	15776304	.	-	1	Parent=Os07t0455100-01
Chr07	irgsp1_rep	CDS	15776022	15776099	.	-	1	Parent=Os07t0455100-01
Chr07	irgsp1_rep	CDS	15775526	15775610	.	-	1	Parent=Os07t0455100-01
Chr07	irgsp1_rep	CDS	15775367	15775425	.	-	0	Parent=Os07t0455100-01
Chr07	irgsp1_rep	CDS	15775221	15775290	.	-	1	Parent=Os07t0455100-01
Chr07	irgsp1_rep	CDS	15774186	15774277	.	-	0	Parent=Os07t0455100-01
Chr07	irgsp1_rep	CDS	15773630	15773692	.	-	1	Parent=Os07t0455100-01
Chr07	irgsp1_rep	CDS	15773481	15773547	.	-	1	Parent=Os07t0455100-01
Chr07	irgsp1_rep	CDS	15772409	15772624	.	-	0	Parent=Os07t0455100-01
Chr07	irgsp1_rep	CDS	15772208	15772327	.	-	0	Parent=Os07t0455100-01
Chr07	irgsp1_rep	CDS	15770251	15770403	.	-	0	Parent=Os07t0455100-01
Chr07	irgsp1_rep	CDS	15769927	15770010	.	-	0	Parent=Os07t0455100-01
Chr07	irgsp1_rep	three_prime_UTR	15769883	15769926	.	-	.	Parent=Os07t0455100-01
Chr07	irgsp1_rep	mRNA	15852356	15854513	.	-	.	ID=Os07t0456033-00;Name=Os07t0456033-00;Locus_id=Os07g0456033;Note=Hypothetical gene.;Transcript_evidence=tplb0010d24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0456033-00;KEGG=Os07t0456033-00
Chr07	irgsp1_rep	five_prime_UTR	15853736	15854513	.	-	.	Parent=Os07t0456033-00
Chr07	irgsp1_rep	CDS	15852662	15853735	.	-	0	Parent=Os07t0456033-00
Chr07	irgsp1_rep	three_prime_UTR	15852356	15852661	.	-	.	Parent=Os07t0456033-00
Chr07	irgsp1_rep	mRNA	15868984	15874066	.	-	.	ID=Os07t0456400-01;Name=Os07t0456400-01;Locus_id=Os07g0456400;Note=LUC7 related family protein.;Transcript_evidence=AK063477 (DDBJ%2C Best hit);ORF_evidence=Q84LL9 (UniProt);InterPro=LUC7-related (IPR004882);NIAS_FLcDNA=001-116-B04;Expression=AK063477;TENOR=Os07t0456400-01;KEGG=Os07t0456400-01
Chr07	irgsp1_rep	five_prime_UTR	15873985	15874066	.	-	.	Parent=Os07t0456400-01
Chr07	irgsp1_rep	CDS	15873942	15873984	.	-	0	Parent=Os07t0456400-01
Chr07	irgsp1_rep	CDS	15873734	15873862	.	-	2	Parent=Os07t0456400-01
Chr07	irgsp1_rep	CDS	15873561	15873600	.	-	2	Parent=Os07t0456400-01
Chr07	irgsp1_rep	CDS	15871897	15871972	.	-	1	Parent=Os07t0456400-01
Chr07	irgsp1_rep	CDS	15871630	15871824	.	-	0	Parent=Os07t0456400-01
Chr07	irgsp1_rep	CDS	15871328	15871537	.	-	0	Parent=Os07t0456400-01
Chr07	irgsp1_rep	CDS	15870094	15870447	.	-	0	Parent=Os07t0456400-01
Chr07	irgsp1_rep	three_prime_UTR	15870056	15870093	.	-	.	Parent=Os07t0456400-01
Chr07	irgsp1_rep	three_prime_UTR	15868984	15869962	.	-	.	Parent=Os07t0456400-01
Chr07	irgsp1_rep	mRNA	15869806	15874066	.	-	.	ID=Os07t0456400-02;Name=Os07t0456400-02;Locus_id=Os07g0456400;Note=LUC7 related family protein.;Transcript_evidence=AK101282 (DDBJ%2C Best hit);ORF_evidence=Q84LL9 (UniProt);InterPro=LUC7-related (IPR004882);NIAS_FLcDNA=J033033D05;Expression=AK101282;TENOR=Os07t0456400-02;KEGG=Os07t0456400-02
Chr07	irgsp1_rep	five_prime_UTR	15873985	15874066	.	-	.	Parent=Os07t0456400-02
Chr07	irgsp1_rep	CDS	15873942	15873984	.	-	0	Parent=Os07t0456400-02
Chr07	irgsp1_rep	CDS	15873734	15873862	.	-	2	Parent=Os07t0456400-02
Chr07	irgsp1_rep	CDS	15873561	15873600	.	-	2	Parent=Os07t0456400-02
Chr07	irgsp1_rep	CDS	15871897	15871972	.	-	1	Parent=Os07t0456400-02
Chr07	irgsp1_rep	CDS	15871630	15871824	.	-	0	Parent=Os07t0456400-02
Chr07	irgsp1_rep	CDS	15871328	15871537	.	-	0	Parent=Os07t0456400-02
Chr07	irgsp1_rep	CDS	15870094	15870447	.	-	0	Parent=Os07t0456400-02
Chr07	irgsp1_rep	three_prime_UTR	15869806	15870093	.	-	.	Parent=Os07t0456400-02
Chr07	irgsp1_rep	mRNA	15869782	15871423	.	-	.	ID=Os07t0456400-03;Name=Os07t0456400-03;Locus_id=Os07g0456400;Note=Similar to predicted protein.;Transcript_evidence=AK059613 (DDBJ%2C Best hit);ORF_evidence=NP_001131813.1 (RefSeq);InterPro=LUC7-related (IPR004882);NIAS_FLcDNA=001-030-F11;Expression=AK059613;TENOR=Os07t0456400-03;KEGG=Os07t0456400-03
Chr07	irgsp1_rep	CDS	15871328	15871423	.	-	0	Parent=Os07t0456400-03
Chr07	irgsp1_rep	CDS	15870094	15870447	.	-	0	Parent=Os07t0456400-03
Chr07	irgsp1_rep	three_prime_UTR	15869782	15870093	.	-	.	Parent=Os07t0456400-03
Chr07	irgsp1_rep	mRNA	15875835	15881340	.	-	.	ID=Os07t0456500-01;Name=Os07t0456500-01;Locus_id=Os07g0456500;Note=Hypothetical conserved gene.;Transcript_evidence=AK242842 (DDBJ%2C Best hit);ORF_evidence=Q84YR9 (UniProt);InterPro=Cellular retinaldehyde-binding/triple function%2C C-terminal (IPR001251),Phosphatidylinositol transfer protein-like%2C N-terminal (IPR011074);NIAS_FLcDNA=J090070H08;TENOR=Os07t0456500-01;KEGG=Os07t0456500-01
Chr07	irgsp1_rep	five_prime_UTR	15880757	15881340	.	-	.	Parent=Os07t0456500-01
Chr07	irgsp1_rep	five_prime_UTR	15879895	15879943	.	-	.	Parent=Os07t0456500-01
Chr07	irgsp1_rep	CDS	15879716	15879894	.	-	0	Parent=Os07t0456500-01
Chr07	irgsp1_rep	CDS	15879442	15879541	.	-	1	Parent=Os07t0456500-01
Chr07	irgsp1_rep	CDS	15878998	15879264	.	-	0	Parent=Os07t0456500-01
Chr07	irgsp1_rep	CDS	15878483	15878650	.	-	0	Parent=Os07t0456500-01
Chr07	irgsp1_rep	three_prime_UTR	15877889	15878482	.	-	.	Parent=Os07t0456500-01
Chr07	irgsp1_rep	three_prime_UTR	15877746	15877795	.	-	.	Parent=Os07t0456500-01
Chr07	irgsp1_rep	three_prime_UTR	15877569	15877677	.	-	.	Parent=Os07t0456500-01
Chr07	irgsp1_rep	three_prime_UTR	15877387	15877464	.	-	.	Parent=Os07t0456500-01
Chr07	irgsp1_rep	three_prime_UTR	15876814	15876888	.	-	.	Parent=Os07t0456500-01
Chr07	irgsp1_rep	three_prime_UTR	15876477	15876585	.	-	.	Parent=Os07t0456500-01
Chr07	irgsp1_rep	three_prime_UTR	15876323	15876393	.	-	.	Parent=Os07t0456500-01
Chr07	irgsp1_rep	three_prime_UTR	15875835	15876229	.	-	.	Parent=Os07t0456500-01
Chr07	irgsp1_rep	mRNA	15884357	15890031	.	+	.	ID=Os07t0456700-01;Name=Os07t0456700-01;Locus_id=Os07g0456700;Note=Similar to (1%2C4)-beta-xylan endohydrolase (EC 3.2.1.8).;Transcript_evidence=AK100891 (DDBJ%2C Best hit);ORF_evidence=XP_002889787.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: hydrolase activity%2C acting on glycosyl bonds (GO:0016798),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 10 (IPR001000),Carbohydrate-binding%2C CenC-like (IPR003305),Galactose-binding domain-like (IPR008979),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J023130H08;Expression=AK100891;TENOR=Os07t0456700-01;KEGG=Os07t0456700-01 (EC:3.2.1.8)
Chr07	irgsp1_rep	five_prime_UTR	15884357	15884680	.	+	.	Parent=Os07t0456700-01
Chr07	irgsp1_rep	CDS	15884681	15884788	.	+	0	Parent=Os07t0456700-01
Chr07	irgsp1_rep	CDS	15885342	15885706	.	+	0	Parent=Os07t0456700-01
Chr07	irgsp1_rep	CDS	15885782	15885923	.	+	1	Parent=Os07t0456700-01
Chr07	irgsp1_rep	CDS	15886271	15886635	.	+	0	Parent=Os07t0456700-01
Chr07	irgsp1_rep	CDS	15886713	15886872	.	+	1	Parent=Os07t0456700-01
Chr07	irgsp1_rep	CDS	15887278	15887615	.	+	0	Parent=Os07t0456700-01
Chr07	irgsp1_rep	CDS	15887717	15887894	.	+	1	Parent=Os07t0456700-01
Chr07	irgsp1_rep	CDS	15888033	15888566	.	+	0	Parent=Os07t0456700-01
Chr07	irgsp1_rep	CDS	15888755	15889870	.	+	0	Parent=Os07t0456700-01
Chr07	irgsp1_rep	three_prime_UTR	15889871	15890031	.	+	.	Parent=Os07t0456700-01
Chr07	irgsp1_rep	mRNA	15888753	15889835	.	-	.	ID=Os07t0456800-00;Name=Os07t0456800-00;Locus_id=Os07g0456800;Note=Hypothetical protein.;Transcript_evidence=tplb0048l17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0456800-00
Chr07	irgsp1_rep	five_prime_UTR	15889577	15889835	.	-	.	Parent=Os07t0456800-00
Chr07	irgsp1_rep	CDS	15889352	15889576	.	-	0	Parent=Os07t0456800-00
Chr07	irgsp1_rep	three_prime_UTR	15888753	15889351	.	-	.	Parent=Os07t0456800-00
Chr07	irgsp1_rep	mRNA	15899431	15902146	.	-	.	ID=Os07t0456900-01;Name=Os07t0456900-01;Locus_id=Os07g0456900;CGSNL Gene Symbol=NAC65;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 65;Oryzabase Gene Symbol Synonym(s)=ONAC065%2C ONAC65;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 065%2C NAC domain-containing protein 65;Note=No apical meristem (NAM) protein domain containing protein.;Transcript_evidence=AK101301 (DDBJ%2C Best hit);ORF_evidence=B8B5R1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=J033033K06;Oryzabase=11493;Expression=AK101301;TENOR=Os07t0456900-01;KEGG=Os07t0456900-01
Chr07	irgsp1_rep	five_prime_UTR	15902053	15902146	.	-	.	Parent=Os07t0456900-01
Chr07	irgsp1_rep	CDS	15899722	15902052	.	-	0	Parent=Os07t0456900-01
Chr07	irgsp1_rep	three_prime_UTR	15899431	15899721	.	-	.	Parent=Os07t0456900-01
Chr07	irgsp1_rep	mRNA	15909491	15911685	.	-	.	ID=Os07t0457200-01;Name=Os07t0457200-01;Locus_id=Os07g0457200;Note=Hypothetical protein.;Transcript_evidence=AK106645 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-113-E10;TENOR=Os07t0457200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	15911684	15911685	.	-	.	Parent=Os07t0457200-01
Chr07	irgsp1_rep	CDS	15911422	15911683	.	-	0	Parent=Os07t0457200-01
Chr07	irgsp1_rep	CDS	15911059	15911147	.	-	2	Parent=Os07t0457200-01
Chr07	irgsp1_rep	three_prime_UTR	15909491	15911058	.	-	.	Parent=Os07t0457200-01
Chr07	irgsp1_rep	mRNA	15912872	15917767	.	+	.	ID=Os07t0457300-01;Name=Os07t0457300-01;Locus_id=Os07g0457300;Note=Protein of unknown function DUF1446 family protein.;Transcript_evidence=AK073856 (DDBJ%2C Best hit);ORF_evidence=Q9LQ79 (UniProt);InterPro=Protein of unknown function DUF1446 (IPR010839);NIAS_FLcDNA=J033075C10;Expression=AK073856;TENOR=Os07t0457300-01;KEGG=Os07t0457300-01
Chr07	irgsp1_rep	five_prime_UTR	15912872	15913045	.	+	.	Parent=Os07t0457300-01
Chr07	irgsp1_rep	five_prime_UTR	15913159	15913250	.	+	.	Parent=Os07t0457300-01
Chr07	irgsp1_rep	CDS	15913251	15913283	.	+	0	Parent=Os07t0457300-01
Chr07	irgsp1_rep	CDS	15913388	15913589	.	+	0	Parent=Os07t0457300-01
Chr07	irgsp1_rep	CDS	15913824	15913898	.	+	2	Parent=Os07t0457300-01
Chr07	irgsp1_rep	CDS	15913985	15914077	.	+	2	Parent=Os07t0457300-01
Chr07	irgsp1_rep	CDS	15914175	15914215	.	+	2	Parent=Os07t0457300-01
Chr07	irgsp1_rep	CDS	15914646	15914759	.	+	0	Parent=Os07t0457300-01
Chr07	irgsp1_rep	CDS	15915211	15915325	.	+	0	Parent=Os07t0457300-01
Chr07	irgsp1_rep	CDS	15915419	15915609	.	+	2	Parent=Os07t0457300-01
Chr07	irgsp1_rep	CDS	15915681	15915797	.	+	0	Parent=Os07t0457300-01
Chr07	irgsp1_rep	CDS	15916093	15916173	.	+	0	Parent=Os07t0457300-01
Chr07	irgsp1_rep	CDS	15916308	15916543	.	+	0	Parent=Os07t0457300-01
Chr07	irgsp1_rep	CDS	15916798	15916837	.	+	1	Parent=Os07t0457300-01
Chr07	irgsp1_rep	CDS	15916972	15917547	.	+	0	Parent=Os07t0457300-01
Chr07	irgsp1_rep	three_prime_UTR	15917548	15917767	.	+	.	Parent=Os07t0457300-01
Chr07	irgsp1_rep	mRNA	15918969	15922849	.	+	.	ID=Os07t0457400-01;Name=Os07t0457400-01;Locus_id=Os07g0457400;Note=Hypothetical conserved gene.;Transcript_evidence=AK241893 (DDBJ%2C Best hit);ORF_evidence=A3BJF3 (UniProt);NIAS_FLcDNA=J075007K13;TENOR=Os07t0457400-01;KEGG=Os07t0457400-01
Chr07	irgsp1_rep	five_prime_UTR	15918969	15919126	.	+	.	Parent=Os07t0457400-01
Chr07	irgsp1_rep	five_prime_UTR	15921192	15921370	.	+	.	Parent=Os07t0457400-01
Chr07	irgsp1_rep	five_prime_UTR	15921486	15921487	.	+	.	Parent=Os07t0457400-01
Chr07	irgsp1_rep	CDS	15921488	15922238	.	+	0	Parent=Os07t0457400-01
Chr07	irgsp1_rep	CDS	15922307	15922488	.	+	2	Parent=Os07t0457400-01
Chr07	irgsp1_rep	three_prime_UTR	15922489	15922849	.	+	.	Parent=Os07t0457400-01
Chr07	irgsp1_rep	mRNA	15920705	15925728	.	-	.	ID=Os07t0457500-01;Name=Os07t0457500-01;Locus_id=Os07g0457500;Note=Hypothetical protein.;Transcript_evidence=AK069961 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023039M23;Expression=AK069961;TENOR=Os07t0457500-01;KEGG=Os07t0457500-01
Chr07	irgsp1_rep	five_prime_UTR	15925365	15925728	.	-	.	Parent=Os07t0457500-01
Chr07	irgsp1_rep	five_prime_UTR	15922337	15922493	.	-	.	Parent=Os07t0457500-01
Chr07	irgsp1_rep	CDS	15922091	15922336	.	-	0	Parent=Os07t0457500-01
Chr07	irgsp1_rep	three_prime_UTR	15920705	15922090	.	-	.	Parent=Os07t0457500-01
Chr07	irgsp1_rep	mRNA	15925403	15926963	.	+	.	ID=Os07t0457550-00;Name=Os07t0457550-00;Locus_id=Os07g0457550;Note=Similar to CAAX amino terminal protease family protein.;Transcript_evidence=AK361273 (DDBJ);ORF_evidence=NP_001152337.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=CAAX amino terminal protease (IPR003675);TENOR=Os07t0457550-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	15925403	15925439	.	+	.	Parent=Os07t0457550-00
Chr07	irgsp1_rep	CDS	15925440	15925661	.	+	0	Parent=Os07t0457550-00
Chr07	irgsp1_rep	CDS	15926035	15926193	.	+	0	Parent=Os07t0457550-00
Chr07	irgsp1_rep	CDS	15926276	15926491	.	+	0	Parent=Os07t0457550-00
Chr07	irgsp1_rep	CDS	15926611	15926952	.	+	0	Parent=Os07t0457550-00
Chr07	irgsp1_rep	three_prime_UTR	15926953	15926963	.	+	.	Parent=Os07t0457550-00
Chr07	irgsp1_rep	mRNA	15928780	15931699	.	+	.	ID=Os07t0458025-00;Name=Os07t0458025-00;Locus_id=Os07g0458025;Note=Non-protein coding transcript.;Transcript_evidence=tplb0031m13 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os07t0458025-00
Chr07	irgsp1_rep	exon	15928780	15930698	.	+	.	Parent=Os07t0458025-00
Chr07	irgsp1_rep	exon	15930960	15931699	.	+	.	Parent=Os07t0458025-00
Chr07	irgsp1_rep	mRNA	15982511	15983945	.	+	.	ID=Os07t0458500-00;Name=Os07t0458500-00;Locus_id=Os07g0458500;Note=Hypothetical conserved gene.;Transcript_evidence=AK250315 (DDBJ);ORF_evidence=Q84YQ5 (UniProt);InterPro=Transmembrane protein 6/97 (IPR016964);TENOR=Os07t0458500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	15982511	15982834	.	+	0	Parent=Os07t0458500-00
Chr07	irgsp1_rep	CDS	15983753	15983926	.	+	0	Parent=Os07t0458500-00
Chr07	irgsp1_rep	three_prime_UTR	15983927	15983945	.	+	.	Parent=Os07t0458500-00
Chr07	irgsp1_rep	mRNA	15990914	15993925	.	+	.	ID=Os07t0458700-01;Name=Os07t0458700-01;Locus_id=Os07g0458700;Note=Transmembrane protein 97%2C predicted domain containing protein.;Transcript_evidence=AK112061 (DDBJ%2C Best hit);ORF_evidence=A2YKZ2 (UniProt);InterPro=Transmembrane protein 6/97 (IPR016964);NIAS_FLcDNA=001-112-G08;Expression=AK112061;TENOR=Os07t0458700-01;KEGG=Os07t0458700-01
Chr07	irgsp1_rep	five_prime_UTR	15990914	15990979	.	+	.	Parent=Os07t0458700-01
Chr07	irgsp1_rep	CDS	15990980	15991303	.	+	0	Parent=Os07t0458700-01
Chr07	irgsp1_rep	CDS	15993413	15993589	.	+	0	Parent=Os07t0458700-01
Chr07	irgsp1_rep	three_prime_UTR	15993590	15993925	.	+	.	Parent=Os07t0458700-01
Chr07	irgsp1_rep	mRNA	15998528	16003262	.	+	.	ID=Os07t0458800-01;Name=Os07t0458800-01;Locus_id=Os07g0458800;Note=Similar to Serine/threonine-protein kinase 19.;Transcript_evidence=AK111873 (DDBJ%2C Best hit);ORF_evidence=B6TW02 (UniProt);InterPro=Serine-threonine protein kinase 19 (IPR018865);NIAS_FLcDNA=J033045J20;TENOR=Os07t0458800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	15998528	15998633	.	+	.	Parent=Os07t0458800-01
Chr07	irgsp1_rep	five_prime_UTR	15998738	15998852	.	+	.	Parent=Os07t0458800-01
Chr07	irgsp1_rep	CDS	15998853	15998985	.	+	0	Parent=Os07t0458800-01
Chr07	irgsp1_rep	CDS	15999103	15999176	.	+	2	Parent=Os07t0458800-01
Chr07	irgsp1_rep	CDS	15999899	15999979	.	+	0	Parent=Os07t0458800-01
Chr07	irgsp1_rep	CDS	16000200	16000292	.	+	0	Parent=Os07t0458800-01
Chr07	irgsp1_rep	CDS	16001157	16001276	.	+	0	Parent=Os07t0458800-01
Chr07	irgsp1_rep	CDS	16001921	16001992	.	+	0	Parent=Os07t0458800-01
Chr07	irgsp1_rep	CDS	16002203	16002280	.	+	0	Parent=Os07t0458800-01
Chr07	irgsp1_rep	CDS	16003042	16003233	.	+	0	Parent=Os07t0458800-01
Chr07	irgsp1_rep	three_prime_UTR	16003234	16003262	.	+	.	Parent=Os07t0458800-01
Chr07	irgsp1_rep	mRNA	16009452	16010073	.	+	.	ID=Os07t0459000-01;Name=Os07t0459000-01;Locus_id=Os07g0459000;Note=Hypothetical protein.;Transcript_evidence=AK066176 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013056E23;TENOR=Os07t0459000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	16009452	16009727	.	+	0	Parent=Os07t0459000-01
Chr07	irgsp1_rep	three_prime_UTR	16009728	16010073	.	+	.	Parent=Os07t0459000-01
Chr07	irgsp1_rep	mRNA	16013078	16022639	.	-	.	ID=Os07t0459200-01;Name=Os07t0459200-01;Locus_id=Os07g0459200;Note=Similar to Possible kinase.;Transcript_evidence=AK102099 (DDBJ%2C Best hit);ORF_evidence=NP_001148089.1 (RefSeq);InterPro=ABC-1 (IPR004147);NIAS_FLcDNA=J033083L03;Expression=AK102099;TENOR=Os07t0459200-01;KEGG=Os07t0459200-01
Chr07	irgsp1_rep	five_prime_UTR	16022543	16022639	.	-	.	Parent=Os07t0459200-01
Chr07	irgsp1_rep	CDS	16022361	16022542	.	-	0	Parent=Os07t0459200-01
Chr07	irgsp1_rep	CDS	16020824	16021067	.	-	1	Parent=Os07t0459200-01
Chr07	irgsp1_rep	CDS	16020556	16020597	.	-	0	Parent=Os07t0459200-01
Chr07	irgsp1_rep	CDS	16020110	16020181	.	-	0	Parent=Os07t0459200-01
Chr07	irgsp1_rep	CDS	16019441	16019576	.	-	0	Parent=Os07t0459200-01
Chr07	irgsp1_rep	CDS	16019259	16019320	.	-	2	Parent=Os07t0459200-01
Chr07	irgsp1_rep	three_prime_UTR	16019155	16019258	.	-	.	Parent=Os07t0459200-01
Chr07	irgsp1_rep	three_prime_UTR	16018625	16018703	.	-	.	Parent=Os07t0459200-01
Chr07	irgsp1_rep	three_prime_UTR	16018222	16018391	.	-	.	Parent=Os07t0459200-01
Chr07	irgsp1_rep	three_prime_UTR	16017807	16017870	.	-	.	Parent=Os07t0459200-01
Chr07	irgsp1_rep	three_prime_UTR	16016211	16016360	.	-	.	Parent=Os07t0459200-01
Chr07	irgsp1_rep	three_prime_UTR	16015688	16015948	.	-	.	Parent=Os07t0459200-01
Chr07	irgsp1_rep	three_prime_UTR	16013891	16014166	.	-	.	Parent=Os07t0459200-01
Chr07	irgsp1_rep	three_prime_UTR	16013078	16013354	.	-	.	Parent=Os07t0459200-01
Chr07	irgsp1_rep	mRNA	16013083	16022629	.	-	.	ID=Os07t0459200-02;Name=Os07t0459200-02;Locus_id=Os07g0459200;Note=Similar to ubiquinone biosynthesis protein ubiB.;Transcript_evidence=AK066819 (DDBJ%2C Best hit);ORF_evidence=NP_001148089.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Aminoglycoside phosphotransferase (IPR002575),ABC-1 (IPR004147),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J013083M08;Expression=AK066819;TENOR=Os07t0459200-02;KEGG=Os07t0459200-02
Chr07	irgsp1_rep	five_prime_UTR	16022543	16022629	.	-	.	Parent=Os07t0459200-02
Chr07	irgsp1_rep	CDS	16022361	16022542	.	-	0	Parent=Os07t0459200-02
Chr07	irgsp1_rep	CDS	16020824	16021067	.	-	1	Parent=Os07t0459200-02
Chr07	irgsp1_rep	CDS	16020556	16020597	.	-	0	Parent=Os07t0459200-02
Chr07	irgsp1_rep	CDS	16020110	16020181	.	-	0	Parent=Os07t0459200-02
Chr07	irgsp1_rep	CDS	16019441	16019576	.	-	0	Parent=Os07t0459200-02
Chr07	irgsp1_rep	CDS	16019155	16019312	.	-	2	Parent=Os07t0459200-02
Chr07	irgsp1_rep	CDS	16018625	16018703	.	-	0	Parent=Os07t0459200-02
Chr07	irgsp1_rep	CDS	16018222	16018391	.	-	2	Parent=Os07t0459200-02
Chr07	irgsp1_rep	CDS	16017709	16017870	.	-	0	Parent=Os07t0459200-02
Chr07	irgsp1_rep	CDS	16016211	16016360	.	-	0	Parent=Os07t0459200-02
Chr07	irgsp1_rep	CDS	16015688	16015948	.	-	0	Parent=Os07t0459200-02
Chr07	irgsp1_rep	CDS	16013891	16014166	.	-	0	Parent=Os07t0459200-02
Chr07	irgsp1_rep	CDS	16013118	16013354	.	-	0	Parent=Os07t0459200-02
Chr07	irgsp1_rep	three_prime_UTR	16013083	16013117	.	-	.	Parent=Os07t0459200-02
Chr07	irgsp1_rep	mRNA	16029597	16033386	.	+	.	ID=Os07t0459400-01;Name=Os07t0459400-01;Locus_id=Os07g0459400;Note=Regulator of Chromosome condensation%2C RCC1 domain containing protein.;Transcript_evidence=AK101767 (DDBJ%2C Best hit);ORF_evidence=B9FX29 (UniProt);InterPro=Regulator of Chromosome condensation%2C RCC1 (IPR000408),Regulator of Chromosome condensation/beta-lactamase-inhibitor protein II (IPR009091);NIAS_FLcDNA=J033064G16;Oryzabase=17592;Expression=AK101767;TENOR=Os07t0459400-01;KEGG=Os07t0459400-01
Chr07	irgsp1_rep	five_prime_UTR	16029597	16029909	.	+	.	Parent=Os07t0459400-01
Chr07	irgsp1_rep	CDS	16029910	16030224	.	+	0	Parent=Os07t0459400-01
Chr07	irgsp1_rep	CDS	16031154	16031363	.	+	0	Parent=Os07t0459400-01
Chr07	irgsp1_rep	CDS	16031448	16031558	.	+	0	Parent=Os07t0459400-01
Chr07	irgsp1_rep	CDS	16031886	16032254	.	+	0	Parent=Os07t0459400-01
Chr07	irgsp1_rep	CDS	16032342	16032449	.	+	0	Parent=Os07t0459400-01
Chr07	irgsp1_rep	CDS	16032735	16033076	.	+	0	Parent=Os07t0459400-01
Chr07	irgsp1_rep	three_prime_UTR	16033077	16033386	.	+	.	Parent=Os07t0459400-01
Chr07	irgsp1_rep	mRNA	16036836	16038364	.	+	.	ID=Os07t0459500-00;Name=Os07t0459500-00;Locus_id=Os07g0459500;Note=F-box domain%2C Skp2-like domain containing protein.;Transcript_evidence=AK373184 (DDBJ);ORF_evidence=Q84YP6 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);TENOR=Os07t0459500-00
Chr07	irgsp1_rep	five_prime_UTR	16036836	16036840	.	+	.	Parent=Os07t0459500-00
Chr07	irgsp1_rep	CDS	16036841	16037686	.	+	0	Parent=Os07t0459500-00
Chr07	irgsp1_rep	CDS	16037775	16037924	.	+	0	Parent=Os07t0459500-00
Chr07	irgsp1_rep	three_prime_UTR	16037925	16037931	.	+	.	Parent=Os07t0459500-00
Chr07	irgsp1_rep	three_prime_UTR	16038036	16038364	.	+	.	Parent=Os07t0459500-00
Chr07	irgsp1_rep	mRNA	16192184	16193520	.	-	.	ID=Os07t0461500-00;Name=Os07t0461500-00;Locus_id=Os07g0461500;Oryzabase Gene Symbol Synonym(s)=OsSTA194;Note=Clathrin light chain family protein.;Transcript_evidence=AK356621 (DDBJ);ORF_evidence=Q259D4 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: clathrin coat of trans-Golgi network vesicle (GO:0030130),Cellular Component: clathrin coat of coated pit (GO:0030132),Molecular Function: structural molecule activity (GO:0005198);InterPro=Clathrin light chain (IPR000996);Oryzabase=19472;TENOR=Os07t0461500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	16193514	16193520	.	-	.	Parent=Os07t0461500-00
Chr07	irgsp1_rep	CDS	16193044	16193513	.	-	0	Parent=Os07t0461500-00
Chr07	irgsp1_rep	CDS	16192753	16192906	.	-	1	Parent=Os07t0461500-00
Chr07	irgsp1_rep	CDS	16192184	16192651	.	-	0	Parent=Os07t0461500-00
Chr07	irgsp1_rep	mRNA	16192329	16192869	.	+	.	ID=Os07t0461550-00;Name=Os07t0461550-00;Locus_id=Os07g0461550;Note=Hypothetical protein.;Transcript_evidence=BT016392 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0461550-00
Chr07	irgsp1_rep	five_prime_UTR	16192329	16192391	.	+	.	Parent=Os07t0461550-00
Chr07	irgsp1_rep	CDS	16192392	16192678	.	+	0	Parent=Os07t0461550-00
Chr07	irgsp1_rep	CDS	16192776	16192869	.	+	1	Parent=Os07t0461550-00
Chr07	irgsp1_rep	mRNA	16198758	16205951	.	-	.	ID=Os07t0461600-01;Name=Os07t0461600-01;Locus_id=Os07g0461600;Oryzabase Gene Name Synonym(s)=RING-finger protein;Note=Hypothetical conserved gene.;Transcript_evidence=AK067938 (DDBJ%2C Best hit);ORF_evidence=B9FX33 (UniProt);NIAS_FLcDNA=J013123L24;Oryzabase=15989;Expression=AK067938;TENOR=Os07t0461600-01;KEGG=Os07t0461600-01
Chr07	irgsp1_rep	five_prime_UTR	16205683	16205951	.	-	.	Parent=Os07t0461600-01
Chr07	irgsp1_rep	five_prime_UTR	16204095	16204541	.	-	.	Parent=Os07t0461600-01
Chr07	irgsp1_rep	CDS	16203747	16204094	.	-	0	Parent=Os07t0461600-01
Chr07	irgsp1_rep	CDS	16203428	16203565	.	-	0	Parent=Os07t0461600-01
Chr07	irgsp1_rep	CDS	16200907	16201019	.	-	0	Parent=Os07t0461600-01
Chr07	irgsp1_rep	CDS	16200764	16200832	.	-	1	Parent=Os07t0461600-01
Chr07	irgsp1_rep	CDS	16200187	16200304	.	-	1	Parent=Os07t0461600-01
Chr07	irgsp1_rep	CDS	16199192	16199352	.	-	0	Parent=Os07t0461600-01
Chr07	irgsp1_rep	CDS	16198970	16199114	.	-	1	Parent=Os07t0461600-01
Chr07	irgsp1_rep	three_prime_UTR	16198758	16198969	.	-	.	Parent=Os07t0461600-01
Chr07	irgsp1_rep	mRNA	16196317	16205951	.	-	.	ID=Os07t0461600-02;Name=Os07t0461600-02;Locus_id=Os07g0461600;Oryzabase Gene Name Synonym(s)=RING-finger protein;Note=Similar to TA7 protein (Fragment).;Transcript_evidence=AK065523 (DDBJ%2C Best hit);ORF_evidence=Q70KT5 (UniProt);NIAS_FLcDNA=J013027P12;Oryzabase=15989;Expression=AK065523;TENOR=Os07t0461600-02;KEGG=Os07t0461600-02
Chr07	irgsp1_rep	five_prime_UTR	16205683	16205951	.	-	.	Parent=Os07t0461600-02
Chr07	irgsp1_rep	five_prime_UTR	16203747	16204165	.	-	.	Parent=Os07t0461600-02
Chr07	irgsp1_rep	five_prime_UTR	16203428	16203565	.	-	.	Parent=Os07t0461600-02
Chr07	irgsp1_rep	five_prime_UTR	16200907	16201019	.	-	.	Parent=Os07t0461600-02
Chr07	irgsp1_rep	five_prime_UTR	16200764	16200832	.	-	.	Parent=Os07t0461600-02
Chr07	irgsp1_rep	five_prime_UTR	16200187	16200304	.	-	.	Parent=Os07t0461600-02
Chr07	irgsp1_rep	five_prime_UTR	16199192	16199352	.	-	.	Parent=Os07t0461600-02
Chr07	irgsp1_rep	five_prime_UTR	16198409	16199114	.	-	.	Parent=Os07t0461600-02
Chr07	irgsp1_rep	CDS	16196780	16198408	.	-	0	Parent=Os07t0461600-02
Chr07	irgsp1_rep	three_prime_UTR	16196317	16196779	.	-	.	Parent=Os07t0461600-02
Chr07	irgsp1_rep	mRNA	16196325	16199192	.	-	.	ID=Os07t0461600-03;Name=Os07t0461600-03;Locus_id=Os07g0461600;Oryzabase Gene Name Synonym(s)=RING-finger protein;Note=Similar to TA7 protein (Fragment).;Transcript_evidence=AK121366 (DDBJ%2C Best hit);ORF_evidence=Q70KT5 (UniProt);NIAS_FLcDNA=J023125F12;Oryzabase=15989;Expression=AK121366;TENOR=Os07t0461600-03;KEGG=Os07t0461600-03
Chr07	irgsp1_rep	five_prime_UTR	16198409	16199192	.	-	.	Parent=Os07t0461600-03
Chr07	irgsp1_rep	CDS	16196780	16198408	.	-	0	Parent=Os07t0461600-03
Chr07	irgsp1_rep	three_prime_UTR	16196325	16196779	.	-	.	Parent=Os07t0461600-03
Chr07	irgsp1_rep	mRNA	16207594	16208337	.	-	.	ID=Os07t0461800-01;Name=Os07t0461800-01;Locus_id=Os07g0461800;Note=Non-protein coding transcript.;Transcript_evidence=AK059451 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-028-B07;TENOR=Os07t0461800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	exon	16207594	16208337	.	-	.	Parent=Os07t0461800-01
Chr07	irgsp1_rep	mRNA	16209262	16210654	.	-	.	ID=Os07t0461900-01;Name=Os07t0461900-01;Locus_id=Os07g0461900;Note=Similar to Acetylornithine aminotransferase%2C mitochondrial precursor (EC 2.6.1.11) (ACOAT) (Acetylornithine transaminase) (AOTA).;Transcript_evidence=AK068200 (DDBJ%2C Best hit);ORF_evidence=O04866 (UniProt);GO=Biological Process: arginine metabolic process (GO:0006525),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transaminase activity (GO:0008483),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Acetylornithine/Succinylornithine aminotransferase (IPR004636),Aminotransferase class-III (IPR005814),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J013140N17;Expression=AK068200;TENOR=Os07t0461900-01;KEGG=Os07t0461900-01 (EC:2.6.1.11)
Chr07	irgsp1_rep	CDS	16210121	16210654	.	-	0	Parent=Os07t0461900-01
Chr07	irgsp1_rep	CDS	16209307	16209759	.	-	0	Parent=Os07t0461900-01
Chr07	irgsp1_rep	three_prime_UTR	16209262	16209306	.	-	.	Parent=Os07t0461900-01
Chr07	irgsp1_rep	mRNA	16210463	16210929	.	+	.	ID=Os07t0461950-00;Name=Os07t0461950-00;Locus_id=Os07g0461950;Note=Hypothetical protein.;Transcript_evidence=BT084770 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0461950-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	16210463	16210551	.	+	0	Parent=Os07t0461950-00
Chr07	irgsp1_rep	CDS	16210658	16210929	.	+	1	Parent=Os07t0461950-00
Chr07	irgsp1_rep	mRNA	16213607	16218080	.	-	.	ID=Os07t0462000-01;Name=Os07t0462000-01;Locus_id=Os07g0462000;RAP-DB Gene Symbol Synonym(s)=OsSG1;RAP-DB Gene Name Synonym(s)=stay-green 1;CGSNL Gene Symbol=SG1;CGSNL Gene Name=STAY-GREEN 1;Oryzabase Gene Symbol Synonym(s)=OsSG1%2C OsSG1-1%2C OsSG1-2%2C OsSG1-3%2C GSH1%2C OsGSH1;Oryzabase Gene Name Synonym(s)=stay-green 1;Note=Glutamate-cysteine ligase%2C Control of multiple chlorophyll-related traits%2C including chlorophyll content and strong stay-green phenotype;Transcript_evidence=AK242792 (truncated),Inferred from literature;ORF_evidence=Q6Z3A3;GO=Biological Process: glutathione biosynthetic process (GO:0006750),Biological Process: cellular modified amino acid biosynthetic process (GO:0042398),Molecular Function: catalytic activity (GO:0003824),Molecular Function: glutamate-cysteine ligase activity (GO:0004357);InterPro=Glutamine synthetase/guanido kinase%2C catalytic domain (IPR014746),Glutamate--cysteine ligase%2C GCS2 (IPR006336),Glutamate--cysteine ligase%2C bacteria and plant (IPR035434),Glutamate--cysteine ligase%2C plant-type (IPR011556);NIAS_FLcDNA=J090057P22 (truncated);Manual Curation=February 26%2C 2019;Literature_PMID=30796281;Oryzabase=22974;TENOR=Os07t0462000-01;KEGG=Os07t0462000-01 (EC:6.3.2.2);B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	16217977	16218080	.	-	.	Parent=Os07t0462000-01
Chr07	irgsp1_rep	five_prime_UTR	16217853	16217876	.	-	.	Parent=Os07t0462000-01
Chr07	irgsp1_rep	CDS	16217605	16217852	.	-	0	Parent=Os07t0462000-01
Chr07	irgsp1_rep	CDS	16216876	16217026	.	-	1	Parent=Os07t0462000-01
Chr07	irgsp1_rep	CDS	16216574	16216681	.	-	0	Parent=Os07t0462000-01
Chr07	irgsp1_rep	CDS	16216334	16216426	.	-	0	Parent=Os07t0462000-01
Chr07	irgsp1_rep	CDS	16216124	16216207	.	-	0	Parent=Os07t0462000-01
Chr07	irgsp1_rep	CDS	16215948	16216016	.	-	0	Parent=Os07t0462000-01
Chr07	irgsp1_rep	CDS	16215784	16215854	.	-	0	Parent=Os07t0462000-01
Chr07	irgsp1_rep	CDS	16215642	16215710	.	-	1	Parent=Os07t0462000-01
Chr07	irgsp1_rep	CDS	16215391	16215484	.	-	1	Parent=Os07t0462000-01
Chr07	irgsp1_rep	CDS	16215184	16215273	.	-	0	Parent=Os07t0462000-01
Chr07	irgsp1_rep	CDS	16215009	16215089	.	-	0	Parent=Os07t0462000-01
Chr07	irgsp1_rep	CDS	16214739	16214831	.	-	0	Parent=Os07t0462000-01
Chr07	irgsp1_rep	CDS	16214439	16214519	.	-	0	Parent=Os07t0462000-01
Chr07	irgsp1_rep	CDS	16214274	16214343	.	-	0	Parent=Os07t0462000-01
Chr07	irgsp1_rep	CDS	16214046	16214134	.	-	2	Parent=Os07t0462000-01
Chr07	irgsp1_rep	three_prime_UTR	16213607	16214045	.	-	.	Parent=Os07t0462000-01
Chr07	irgsp1_rep	mRNA	16220374	16221117	.	-	.	ID=Os07t0462132-00;Name=Os07t0462132-00;Locus_id=Os07g0462132;Note=Non-protein coding transcript.;Transcript_evidence=AK059451 (DDBJ%2C Secondary hit);ORF_evidence=NONE;TENOR=Os07t0462132-00
Chr07	irgsp1_rep	exon	16220374	16221117	.	-	.	Parent=Os07t0462132-00
Chr07	irgsp1_rep	mRNA	16226697	16230667	.	-	.	ID=Os07t0462200-01;Name=Os07t0462200-01;Locus_id=Os07g0462200;Note=Protein of unknown function DUF1218 family protein.;Transcript_evidence=AK059964 (DDBJ%2C Best hit);ORF_evidence=E6Y2R6 (UniProt);InterPro=Protein of unknown function DUF1218 (IPR009606);NIAS_FLcDNA=006-211-F08;Expression=AK059964;TENOR=Os07t0462200-01;KEGG=Os07t0462200-01
Chr07	irgsp1_rep	five_prime_UTR	16230552	16230667	.	-	.	Parent=Os07t0462200-01
Chr07	irgsp1_rep	CDS	16230460	16230551	.	-	0	Parent=Os07t0462200-01
Chr07	irgsp1_rep	CDS	16230155	16230358	.	-	1	Parent=Os07t0462200-01
Chr07	irgsp1_rep	CDS	16226931	16227192	.	-	1	Parent=Os07t0462200-01
Chr07	irgsp1_rep	three_prime_UTR	16226697	16226930	.	-	.	Parent=Os07t0462200-01
Chr07	irgsp1_rep	mRNA	16226931	16230210	.	+	.	ID=Os07t0462450-00;Name=Os07t0462450-00;Locus_id=Os07g0462450;Note=Non-protein coding transcript.;Transcript_evidence=BT086987 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0462450-00
Chr07	irgsp1_rep	exon	16226931	16227186	.	+	.	Parent=Os07t0462450-00
Chr07	irgsp1_rep	exon	16230141	16230210	.	+	.	Parent=Os07t0462450-00
Chr07	irgsp1_rep	mRNA	16259328	16262134	.	+	.	ID=Os07t0462500-00;Name=Os07t0462500-00;Locus_id=Os07g0462500;Note=C2 calcium-dependent membrane targeting domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FX35 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),C2 membrane targeting protein (IPR018029);TENOR=Os07t0462500-00
Chr07	irgsp1_rep	CDS	16259328	16259459	.	+	0	Parent=Os07t0462500-00
Chr07	irgsp1_rep	CDS	16261611	16261709	.	+	0	Parent=Os07t0462500-00
Chr07	irgsp1_rep	CDS	16261808	16262134	.	+	0	Parent=Os07t0462500-00
Chr07	irgsp1_rep	mRNA	16264745	16266497	.	+	.	ID=Os07t0462700-01;Name=Os07t0462700-01;Locus_id=Os07g0462700;Note=Thioesterase superfamily domain containing protein.;Transcript_evidence=AK073834 (DDBJ%2C Best hit),AK104968 (DDBJ%2C Best hit);ORF_evidence=NP_001152568.1 (RefSeq);InterPro=Thioesterase superfamily (IPR006683);NIAS_FLcDNA=J033068J20,001-121-E04;Expression=AK073834;TENOR=Os07t0462700-01;KEGG=Os07t0462700-01
Chr07	irgsp1_rep	five_prime_UTR	16264745	16264758	.	+	.	Parent=Os07t0462700-01
Chr07	irgsp1_rep	CDS	16264759	16264989	.	+	0	Parent=Os07t0462700-01
Chr07	irgsp1_rep	CDS	16265095	16265238	.	+	0	Parent=Os07t0462700-01
Chr07	irgsp1_rep	CDS	16266045	16266188	.	+	0	Parent=Os07t0462700-01
Chr07	irgsp1_rep	three_prime_UTR	16266189	16266497	.	+	.	Parent=Os07t0462700-01
Chr07	irgsp1_rep	mRNA	16272981	16274517	.	+	.	ID=Os07t0462800-00;Name=Os07t0462800-00;Locus_id=Os07g0462800;Note=O-methyltransferase%2C family 2 domain containing protein.;Transcript_evidence=AK251187 (DDBJ);ORF_evidence=A2YL13 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: O-methyltransferase activity (GO:0008171),Molecular Function: protein dimerization activity (GO:0046983);InterPro=O-methyltransferase%2C family 2 (IPR001077),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Plant methyltransferase dimerisation (IPR012967),O-methyltransferase%2C COMT%2C eukaryota (IPR016461);TENOR=Os07t0462800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	16272981	16273005	.	+	.	Parent=Os07t0462800-00
Chr07	irgsp1_rep	CDS	16273006	16273815	.	+	0	Parent=Os07t0462800-00
Chr07	irgsp1_rep	CDS	16274239	16274487	.	+	0	Parent=Os07t0462800-00
Chr07	irgsp1_rep	three_prime_UTR	16274488	16274517	.	+	.	Parent=Os07t0462800-00
Chr07	irgsp1_rep	mRNA	16290024	16293442	.	-	.	ID=Os07t0463100-01;Name=Os07t0463100-01;Locus_id=Os07g0463100;Note=RNA polymerase subunit%2C RPB6/omega domain containing protein.;Transcript_evidence=AK121807 (DDBJ%2C Best hit);ORF_evidence=B6TJG4 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Cellular Component: RNA polymerase complex (GO:0030880),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899);InterPro=RNA polymerase%2C subunit omega/K/RPABC2 (IPR006110),DNA-directed RNA polymerase%2C subunit K/RPABC2 (IPR006111),RNA polymerase subunit%2C RPB6/omega (IPR012293),DNA-directed RNA polymerase%2C 14-18kDa subunit%2C conserved site (IPR020708);NIAS_FLcDNA=J033097N04;Expression=AK121807;TENOR=Os07t0463100-01;KEGG=Os07t0463100-01
Chr07	irgsp1_rep	five_prime_UTR	16293329	16293442	.	-	.	Parent=Os07t0463100-01
Chr07	irgsp1_rep	CDS	16293294	16293328	.	-	0	Parent=Os07t0463100-01
Chr07	irgsp1_rep	CDS	16292190	16292223	.	-	1	Parent=Os07t0463100-01
Chr07	irgsp1_rep	CDS	16291936	16292105	.	-	0	Parent=Os07t0463100-01
Chr07	irgsp1_rep	CDS	16291791	16291842	.	-	1	Parent=Os07t0463100-01
Chr07	irgsp1_rep	CDS	16290401	16290468	.	-	0	Parent=Os07t0463100-01
Chr07	irgsp1_rep	CDS	16290238	16290307	.	-	1	Parent=Os07t0463100-01
Chr07	irgsp1_rep	three_prime_UTR	16290024	16290237	.	-	.	Parent=Os07t0463100-01
Chr07	irgsp1_rep	mRNA	16303025	16307421	.	+	.	ID=Os07t0463400-01;Name=Os07t0463400-01;Locus_id=Os07g0463400;Note=Similar to RES protein.;Transcript_evidence=AK067630 (DDBJ%2C Best hit);ORF_evidence=F1DJW2 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J013113E15;Expression=AK067630;TENOR=Os07t0463400-01;KEGG=Os07t0463400-01
Chr07	irgsp1_rep	five_prime_UTR	16303025	16303075	.	+	.	Parent=Os07t0463400-01
Chr07	irgsp1_rep	CDS	16303076	16303572	.	+	0	Parent=Os07t0463400-01
Chr07	irgsp1_rep	CDS	16304529	16304648	.	+	1	Parent=Os07t0463400-01
Chr07	irgsp1_rep	CDS	16304745	16304877	.	+	1	Parent=Os07t0463400-01
Chr07	irgsp1_rep	CDS	16305446	16305610	.	+	0	Parent=Os07t0463400-01
Chr07	irgsp1_rep	CDS	16306868	16307038	.	+	0	Parent=Os07t0463400-01
Chr07	irgsp1_rep	three_prime_UTR	16307039	16307421	.	+	.	Parent=Os07t0463400-01
Chr07	irgsp1_rep	mRNA	16307646	16309638	.	-	.	ID=Os07t0463500-00;Name=Os07t0463500-00;Locus_id=Os07g0463500;Note=Similar to thioesterase family protein.;Transcript_evidence=AK354998 (DDBJ);ORF_evidence=NP_001152568.1 (RefSeq);InterPro=Thioesterase superfamily (IPR006683);TENOR=Os07t0463500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	16309351	16309638	.	-	0	Parent=Os07t0463500-00
Chr07	irgsp1_rep	CDS	16309098	16309241	.	-	0	Parent=Os07t0463500-00
Chr07	irgsp1_rep	CDS	16307753	16307896	.	-	0	Parent=Os07t0463500-00
Chr07	irgsp1_rep	three_prime_UTR	16307646	16307752	.	-	.	Parent=Os07t0463500-00
Chr07	irgsp1_rep	mRNA	16315081	16318851	.	-	.	ID=Os07t0463600-00;Name=Os07t0463600-00;Locus_id=Os07g0463600;Note=O-methyltransferase%2C family 2 domain containing protein.;Transcript_evidence=AK330822 (DDBJ);ORF_evidence=GeneMark;GO=Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: O-methyltransferase activity (GO:0008171),Molecular Function: protein dimerization activity (GO:0046983);InterPro=O-methyltransferase%2C family 2 (IPR001077),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Plant methyltransferase dimerisation (IPR012967),O-methyltransferase%2C COMT%2C eukaryota (IPR016461);TENOR=Os07t0463600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	16318054	16318851	.	-	0	Parent=Os07t0463600-00
Chr07	irgsp1_rep	CDS	16315132	16315431	.	-	0	Parent=Os07t0463600-00
Chr07	irgsp1_rep	three_prime_UTR	16315081	16315131	.	-	.	Parent=Os07t0463600-00
Chr07	irgsp1_rep	mRNA	16323142	16326992	.	-	.	ID=Os07t0463800-00;Name=Os07t0463800-00;Locus_id=Os07g0463800;Note=Similar to Bowman-Birk type bran trypsin inhibitor.;Transcript_evidence=AK249661 (DDBJ);ORF_evidence=Q0JR25 (UniProt);TENOR=Os07t0463800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	16326633	16326992	.	-	0	Parent=Os07t0463800-00
Chr07	irgsp1_rep	CDS	16323142	16323702	.	-	0	Parent=Os07t0463800-00
Chr07	irgsp1_rep	mRNA	16329354	16331080	.	-	.	ID=Os07t0464001-01;Name=Os07t0464001-01;Locus_id=Os07g0464001;Note=Hypothetical gene.;Transcript_evidence=AK289077 (DDBJ%2C Best hit);ORF_evidence=Q9FP73 (UniProt);NIAS_FLcDNA=J090094O13;TENOR=Os07t0464001-01;KEGG=Os07t0464001-01
Chr07	irgsp1_rep	five_prime_UTR	16329877	16331080	.	-	.	Parent=Os07t0464001-01
Chr07	irgsp1_rep	CDS	16329640	16329876	.	-	0	Parent=Os07t0464001-01
Chr07	irgsp1_rep	three_prime_UTR	16329354	16329639	.	-	.	Parent=Os07t0464001-01
Chr07	irgsp1_rep	mRNA	16346965	16349480	.	-	.	ID=Os07t0464200-00;Name=Os07t0464200-00;Locus_id=Os07g0464200;Note=Similar to O-methyltransferase ZRP4.;Transcript_evidence=EU961745 (DDBJ);ORF_evidence=NP_001148593.1 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: O-methyltransferase activity (GO:0008171),Molecular Function: protein dimerization activity (GO:0046983);InterPro=O-methyltransferase%2C family 2 (IPR001077),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Plant methyltransferase dimerisation (IPR012967),O-methyltransferase%2C COMT%2C eukaryota (IPR016461);TENOR=Os07t0464200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	16349480	16349480	.	-	.	Parent=Os07t0464200-00
Chr07	irgsp1_rep	CDS	16348733	16349479	.	-	0	Parent=Os07t0464200-00
Chr07	irgsp1_rep	CDS	16347040	16347339	.	-	0	Parent=Os07t0464200-00
Chr07	irgsp1_rep	three_prime_UTR	16346965	16347039	.	-	.	Parent=Os07t0464200-00
Chr07	irgsp1_rep	mRNA	16375059	16387446	.	+	.	ID=Os07t0464600-01;Name=Os07t0464600-01;Locus_id=Os07g0464600;CGSNL Gene Symbol=ABCB26;CGSNL Gene Name=ABC TRANSPORTER B FAMILY MEMBER 26;Oryzabase Gene Symbol Synonym(s)=OsABCB26;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCB subgroup member 26;Note=ABC transporter-like domain containing protein.;Transcript_evidence=AK067140 (DDBJ%2C Best hit),AK069799 (DDBJ%2C Best hit);ORF_evidence=NP_194275.2 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);NIAS_FLcDNA=J013094I22,J023030H03;Oryzabase=11944;TENOR=Os07t0464600-01
Chr07	irgsp1_rep	five_prime_UTR	16375059	16375117	.	+	.	Parent=Os07t0464600-01
Chr07	irgsp1_rep	CDS	16375118	16375472	.	+	0	Parent=Os07t0464600-01
Chr07	irgsp1_rep	CDS	16375599	16375786	.	+	2	Parent=Os07t0464600-01
Chr07	irgsp1_rep	CDS	16376460	16376483	.	+	0	Parent=Os07t0464600-01
Chr07	irgsp1_rep	CDS	16377076	16377175	.	+	0	Parent=Os07t0464600-01
Chr07	irgsp1_rep	CDS	16377431	16377523	.	+	2	Parent=Os07t0464600-01
Chr07	irgsp1_rep	CDS	16378294	16378394	.	+	2	Parent=Os07t0464600-01
Chr07	irgsp1_rep	CDS	16378528	16378578	.	+	0	Parent=Os07t0464600-01
Chr07	irgsp1_rep	CDS	16380205	16380333	.	+	0	Parent=Os07t0464600-01
Chr07	irgsp1_rep	CDS	16381351	16381413	.	+	0	Parent=Os07t0464600-01
Chr07	irgsp1_rep	CDS	16381507	16381750	.	+	0	Parent=Os07t0464600-01
Chr07	irgsp1_rep	CDS	16383207	16383355	.	+	2	Parent=Os07t0464600-01
Chr07	irgsp1_rep	CDS	16383434	16383523	.	+	0	Parent=Os07t0464600-01
Chr07	irgsp1_rep	CDS	16383922	16384056	.	+	0	Parent=Os07t0464600-01
Chr07	irgsp1_rep	CDS	16384158	16384214	.	+	0	Parent=Os07t0464600-01
Chr07	irgsp1_rep	CDS	16384658	16384714	.	+	0	Parent=Os07t0464600-01
Chr07	irgsp1_rep	CDS	16386550	16386786	.	+	0	Parent=Os07t0464600-01
Chr07	irgsp1_rep	three_prime_UTR	16386787	16387446	.	+	.	Parent=Os07t0464600-01
Chr07	irgsp1_rep	mRNA	16395598	16398147	.	+	.	ID=Os07t0464700-00;Name=Os07t0464700-00;Locus_id=Os07g0464700;CGSNL Gene Symbol=CYP51H3;CGSNL Gene Name=P-450 51H3;Oryzabase Gene Symbol Synonym(s)=OsCYP51H3;Oryzabase Gene Name Synonym(s)=CytoChrome P450 51H3;Note=Hypothetical conserved gene.;Transcript_evidence=CT836057 (DDBJ%2C Best hit);ORF_evidence=A3BJI6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: monooxygenase activity (GO:0004497),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group IV (IPR002403);Oryzabase=17992;TENOR=Os07t0464700-00;KEGG=Os07t0464700-00 (EC:1.14.13.70)
Chr07	irgsp1_rep	five_prime_UTR	16395598	16395602	.	+	.	Parent=Os07t0464700-00
Chr07	irgsp1_rep	CDS	16395603	16395642	.	+	0	Parent=Os07t0464700-00
Chr07	irgsp1_rep	CDS	16396924	16397699	.	+	2	Parent=Os07t0464700-00
Chr07	irgsp1_rep	three_prime_UTR	16397700	16398147	.	+	.	Parent=Os07t0464700-00
Chr07	irgsp1_rep	mRNA	16426969	16429841	.	+	.	ID=Os07t0465100-01;Name=Os07t0465100-01;Locus_id=Os07g0465100;Note=Conserved hypothetical protein.;Transcript_evidence=AK066135 (DDBJ%2C Best hit);ORF_evidence=NP_001064864.1 (RefSeq);NIAS_FLcDNA=J013053F22;TENOR=Os07t0465100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	16426969	16427627	.	+	.	Parent=Os07t0465100-01
Chr07	irgsp1_rep	five_prime_UTR	16427891	16427905	.	+	.	Parent=Os07t0465100-01
Chr07	irgsp1_rep	CDS	16427906	16428079	.	+	0	Parent=Os07t0465100-01
Chr07	irgsp1_rep	three_prime_UTR	16428080	16428475	.	+	.	Parent=Os07t0465100-01
Chr07	irgsp1_rep	three_prime_UTR	16428561	16429841	.	+	.	Parent=Os07t0465100-01
Chr07	irgsp1_rep	mRNA	16503119	16504714	.	+	.	ID=Os07t0466000-00;Name=Os07t0466000-00;Locus_id=Os07g0466000;Note=Conserved hypothetical protein.;Transcript_evidence=AK371748 (DDBJ);ORF_evidence=Q84PS2 (UniProt);TENOR=Os07t0466000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	16503119	16503208	.	+	.	Parent=Os07t0466000-00
Chr07	irgsp1_rep	five_prime_UTR	16503539	16503541	.	+	.	Parent=Os07t0466000-00
Chr07	irgsp1_rep	CDS	16503542	16504537	.	+	0	Parent=Os07t0466000-00
Chr07	irgsp1_rep	CDS	16504616	16504714	.	+	0	Parent=Os07t0466000-00
Chr07	irgsp1_rep	mRNA	16512417	16518438	.	+	.	ID=Os07t0466200-01;Name=Os07t0466200-01;Locus_id=Os07g0466200;Note=Hypothetical conserved gene.;Transcript_evidence=AK102749 (DDBJ%2C Best hit);ORF_evidence=Q7EYM6 (UniProt);NIAS_FLcDNA=J033106K17;Expression=AK102749;TENOR=Os07t0466200-01;KEGG=Os07t0466200-01
Chr07	irgsp1_rep	five_prime_UTR	16512417	16512510	.	+	.	Parent=Os07t0466200-01
Chr07	irgsp1_rep	five_prime_UTR	16512607	16512675	.	+	.	Parent=Os07t0466200-01
Chr07	irgsp1_rep	five_prime_UTR	16512998	16513112	.	+	.	Parent=Os07t0466200-01
Chr07	irgsp1_rep	CDS	16513113	16513147	.	+	0	Parent=Os07t0466200-01
Chr07	irgsp1_rep	CDS	16513242	16513374	.	+	1	Parent=Os07t0466200-01
Chr07	irgsp1_rep	CDS	16513473	16513646	.	+	0	Parent=Os07t0466200-01
Chr07	irgsp1_rep	CDS	16513739	16513812	.	+	0	Parent=Os07t0466200-01
Chr07	irgsp1_rep	CDS	16514172	16514205	.	+	1	Parent=Os07t0466200-01
Chr07	irgsp1_rep	CDS	16514351	16514409	.	+	0	Parent=Os07t0466200-01
Chr07	irgsp1_rep	CDS	16514618	16514732	.	+	1	Parent=Os07t0466200-01
Chr07	irgsp1_rep	CDS	16514830	16514867	.	+	0	Parent=Os07t0466200-01
Chr07	irgsp1_rep	CDS	16514953	16515050	.	+	1	Parent=Os07t0466200-01
Chr07	irgsp1_rep	CDS	16515169	16515224	.	+	2	Parent=Os07t0466200-01
Chr07	irgsp1_rep	CDS	16515536	16515818	.	+	0	Parent=Os07t0466200-01
Chr07	irgsp1_rep	CDS	16516111	16516226	.	+	2	Parent=Os07t0466200-01
Chr07	irgsp1_rep	CDS	16516857	16516913	.	+	0	Parent=Os07t0466200-01
Chr07	irgsp1_rep	CDS	16517265	16517330	.	+	0	Parent=Os07t0466200-01
Chr07	irgsp1_rep	CDS	16517599	16517673	.	+	0	Parent=Os07t0466200-01
Chr07	irgsp1_rep	CDS	16518021	16518080	.	+	0	Parent=Os07t0466200-01
Chr07	irgsp1_rep	three_prime_UTR	16518081	16518438	.	+	.	Parent=Os07t0466200-01
Chr07	irgsp1_rep	mRNA	16512509	16521870	.	+	.	ID=Os07t0466200-02;Name=Os07t0466200-02;Locus_id=Os07g0466200;Note=Conserved hypothetical protein.;Transcript_evidence=AK100328 (DDBJ%2C Best hit);ORF_evidence=Q7EYM6 (UniProt);NIAS_FLcDNA=J023080A02;Expression=AK100328;TENOR=Os07t0466200-02;KEGG=Os07t0466200-02
Chr07	irgsp1_rep	five_prime_UTR	16512509	16512675	.	+	.	Parent=Os07t0466200-02
Chr07	irgsp1_rep	five_prime_UTR	16512998	16513112	.	+	.	Parent=Os07t0466200-02
Chr07	irgsp1_rep	CDS	16513113	16513147	.	+	0	Parent=Os07t0466200-02
Chr07	irgsp1_rep	CDS	16513242	16513374	.	+	1	Parent=Os07t0466200-02
Chr07	irgsp1_rep	CDS	16513473	16513646	.	+	0	Parent=Os07t0466200-02
Chr07	irgsp1_rep	CDS	16513739	16513812	.	+	0	Parent=Os07t0466200-02
Chr07	irgsp1_rep	CDS	16514172	16514205	.	+	1	Parent=Os07t0466200-02
Chr07	irgsp1_rep	CDS	16514351	16514409	.	+	0	Parent=Os07t0466200-02
Chr07	irgsp1_rep	CDS	16514618	16514732	.	+	1	Parent=Os07t0466200-02
Chr07	irgsp1_rep	CDS	16514830	16514867	.	+	0	Parent=Os07t0466200-02
Chr07	irgsp1_rep	CDS	16514953	16515050	.	+	1	Parent=Os07t0466200-02
Chr07	irgsp1_rep	CDS	16515169	16515224	.	+	2	Parent=Os07t0466200-02
Chr07	irgsp1_rep	CDS	16515536	16515818	.	+	0	Parent=Os07t0466200-02
Chr07	irgsp1_rep	CDS	16516111	16516226	.	+	2	Parent=Os07t0466200-02
Chr07	irgsp1_rep	CDS	16516857	16516913	.	+	0	Parent=Os07t0466200-02
Chr07	irgsp1_rep	CDS	16517265	16517330	.	+	0	Parent=Os07t0466200-02
Chr07	irgsp1_rep	CDS	16517599	16517715	.	+	0	Parent=Os07t0466200-02
Chr07	irgsp1_rep	three_prime_UTR	16517716	16520067	.	+	.	Parent=Os07t0466200-02
Chr07	irgsp1_rep	three_prime_UTR	16520267	16520383	.	+	.	Parent=Os07t0466200-02
Chr07	irgsp1_rep	three_prime_UTR	16521663	16521870	.	+	.	Parent=Os07t0466200-02
Chr07	irgsp1_rep	mRNA	16522454	16524005	.	-	.	ID=Os07t0466300-01;Name=Os07t0466300-01;Locus_id=Os07g0466300;CGSNL Gene Symbol=SLG;CGSNL Gene Name=SLENDER GLUME;Oryzabase Gene Symbol Synonym(s)=slg%2C Rurm1%2C Urm1;Oryzabase Gene Name Synonym(s)=slender glume%2C slender-glume%2C rice ubiquitin-related modifier-1%2C ubiquitin-related modifier-1;Note=Similar to Ubiquitin-related modifier 1 homolog.;Transcript_evidence=AK103374 (DDBJ%2C Best hit);ORF_evidence=NP_001143176.1 (RefSeq);NIAS_FLcDNA=J033127B09;Oryzabase=817;Expression=AK103374;TENOR=Os07t0466300-01;KEGG=Os07t0466300-01
Chr07	irgsp1_rep	five_prime_UTR	16524004	16524005	.	-	.	Parent=Os07t0466300-01
Chr07	irgsp1_rep	CDS	16523848	16524003	.	-	0	Parent=Os07t0466300-01
Chr07	irgsp1_rep	CDS	16523413	16523736	.	-	0	Parent=Os07t0466300-01
Chr07	irgsp1_rep	three_prime_UTR	16522454	16523412	.	-	.	Parent=Os07t0466300-01
Chr07	irgsp1_rep	mRNA	16528747	16531646	.	-	.	ID=Os07t0466500-00;Name=Os07t0466500-00;Locus_id=Os07g0466500;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=AK367583 (DDBJ);ORF_evidence=NP_001059589.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);TENOR=Os07t0466500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	16529610	16531646	.	-	0	Parent=Os07t0466500-00
Chr07	irgsp1_rep	three_prime_UTR	16529465	16529609	.	-	.	Parent=Os07t0466500-00
Chr07	irgsp1_rep	three_prime_UTR	16528747	16529385	.	-	.	Parent=Os07t0466500-00
Chr07	irgsp1_rep	mRNA	16600103	16601979	.	-	.	ID=Os07t0467200-01;Name=Os07t0467200-01;Locus_id=Os07g0467200;Oryzabase Gene Symbol Synonym(s)=OsCDGSH%2C CDGSH;Note=Similar to Clone ZZD536 mRNA sequence.;Transcript_evidence=AK070358 (DDBJ%2C Best hit);ORF_evidence=NP_001147357.1 (RefSeq);GO=Cellular Component: intracellular membrane-bounded organelle (GO:0043231),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=Iron sulphur-containing domain%2C CDGSH-type (IPR018967);NIAS_FLcDNA=J023052K14;Oryzabase=21954;Expression=AK070358;TENOR=Os07t0467200-01;KEGG=Os07t0467200-01
Chr07	irgsp1_rep	five_prime_UTR	16601916	16601979	.	-	.	Parent=Os07t0467200-01
Chr07	irgsp1_rep	CDS	16601686	16601915	.	-	0	Parent=Os07t0467200-01
Chr07	irgsp1_rep	CDS	16600271	16600370	.	-	1	Parent=Os07t0467200-01
Chr07	irgsp1_rep	three_prime_UTR	16600103	16600270	.	-	.	Parent=Os07t0467200-01
Chr07	irgsp1_rep	mRNA	16622696	16625277	.	+	.	ID=Os07t0467500-01;Name=Os07t0467500-01;Locus_id=Os07g0467500;CGSNL Gene Symbol=GRF11;CGSNL Gene Name=GROWTH-REGULATING FACTOR 11;Oryzabase Gene Symbol Synonym(s)=OsGRF11;Oryzabase Gene Name Synonym(s)=growth-regulating factor11;Note=WRC domain containing protein.;Transcript_evidence=AK066400 (DDBJ%2C Best hit);ORF_evidence=A5HEG9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides (GO:0016818);InterPro=WRC (IPR014977),Glutamine-Leucine-Glutamine%2C QLQ (IPR014978);NIAS_FLcDNA=J013062O07;Oryzabase=10285;Expression=AK066400;TENOR=Os07t0467500-01;KEGG=Os07t0467500-01
Chr07	irgsp1_rep	five_prime_UTR	16622696	16622779	.	+	.	Parent=Os07t0467500-01
Chr07	irgsp1_rep	CDS	16622780	16623047	.	+	0	Parent=Os07t0467500-01
Chr07	irgsp1_rep	CDS	16623889	16624113	.	+	2	Parent=Os07t0467500-01
Chr07	irgsp1_rep	CDS	16624439	16624755	.	+	2	Parent=Os07t0467500-01
Chr07	irgsp1_rep	three_prime_UTR	16624756	16625277	.	+	.	Parent=Os07t0467500-01
Chr07	irgsp1_rep	mRNA	16627621	16630910	.	-	.	ID=Os07t0467600-01;Name=Os07t0467600-01;Locus_id=Os07g0467600;Note=Similar to Plus agglutinin.;Transcript_evidence=AK065880 (DDBJ%2C Best hit);ORF_evidence=Q69RL4 (UniProt);InterPro=SNARE associated Golgi protein (IPR015414);NIAS_FLcDNA=J013047C23;Expression=AK065880;TENOR=Os07t0467600-01;KEGG=Os07t0467600-01
Chr07	irgsp1_rep	five_prime_UTR	16630621	16630910	.	-	.	Parent=Os07t0467600-01
Chr07	irgsp1_rep	CDS	16630384	16630620	.	-	0	Parent=Os07t0467600-01
Chr07	irgsp1_rep	CDS	16628534	16628770	.	-	0	Parent=Os07t0467600-01
Chr07	irgsp1_rep	CDS	16628227	16628444	.	-	0	Parent=Os07t0467600-01
Chr07	irgsp1_rep	CDS	16627943	16628117	.	-	1	Parent=Os07t0467600-01
Chr07	irgsp1_rep	three_prime_UTR	16627621	16627942	.	-	.	Parent=Os07t0467600-01
Chr07	irgsp1_rep	mRNA	16627621	16628640	.	-	.	ID=Os07t0467600-02;Name=Os07t0467600-02;Locus_id=Os07g0467600;Note=Similar to predicted protein.;Transcript_evidence=AK121562 (DDBJ%2C Best hit);ORF_evidence=Q2HSS2 (UniProt);InterPro=SNARE associated Golgi protein (IPR015414);NIAS_FLcDNA=J033034D11;Expression=AK121562;TENOR=Os07t0467600-02;KEGG=Os07t0467600-02
Chr07	irgsp1_rep	five_prime_UTR	16628639	16628640	.	-	.	Parent=Os07t0467600-02
Chr07	irgsp1_rep	CDS	16628534	16628638	.	-	0	Parent=Os07t0467600-02
Chr07	irgsp1_rep	CDS	16628227	16628444	.	-	0	Parent=Os07t0467600-02
Chr07	irgsp1_rep	CDS	16627943	16628117	.	-	1	Parent=Os07t0467600-02
Chr07	irgsp1_rep	three_prime_UTR	16627621	16627942	.	-	.	Parent=Os07t0467600-02
Chr07	irgsp1_rep	mRNA	16650494	16657191	.	+	.	ID=Os07t0467800-01;Name=Os07t0467800-01;Locus_id=Os07g0467800;Note=Similar to Transposon protein.;Transcript_evidence=AK072236 (DDBJ%2C Best hit);ORF_evidence=B4FUP6 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C DHHC-type%2C palmitoyltransferase (IPR001594);NIAS_FLcDNA=J023003N03;TENOR=Os07t0467800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	16650494	16650585	.	+	.	Parent=Os07t0467800-01
Chr07	irgsp1_rep	CDS	16650586	16650799	.	+	0	Parent=Os07t0467800-01
Chr07	irgsp1_rep	CDS	16652622	16652867	.	+	2	Parent=Os07t0467800-01
Chr07	irgsp1_rep	CDS	16654164	16654495	.	+	2	Parent=Os07t0467800-01
Chr07	irgsp1_rep	three_prime_UTR	16654496	16655458	.	+	.	Parent=Os07t0467800-01
Chr07	irgsp1_rep	three_prime_UTR	16655534	16655619	.	+	.	Parent=Os07t0467800-01
Chr07	irgsp1_rep	three_prime_UTR	16656723	16656788	.	+	.	Parent=Os07t0467800-01
Chr07	irgsp1_rep	three_prime_UTR	16656864	16657191	.	+	.	Parent=Os07t0467800-01
Chr07	irgsp1_rep	mRNA	16660195	16668065	.	-	.	ID=Os07t0467850-00;Name=Os07t0467850-00;Locus_id=Os07g0467850;Note=Hypothetical protein.;Transcript_evidence=tplb0036o16 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0467850-00
Chr07	irgsp1_rep	five_prime_UTR	16667900	16668065	.	-	.	Parent=Os07t0467850-00
Chr07	irgsp1_rep	five_prime_UTR	16667559	16667811	.	-	.	Parent=Os07t0467850-00
Chr07	irgsp1_rep	five_prime_UTR	16667423	16667481	.	-	.	Parent=Os07t0467850-00
Chr07	irgsp1_rep	five_prime_UTR	16666733	16666851	.	-	.	Parent=Os07t0467850-00
Chr07	irgsp1_rep	five_prime_UTR	16666111	16666226	.	-	.	Parent=Os07t0467850-00
Chr07	irgsp1_rep	five_prime_UTR	16665408	16665573	.	-	.	Parent=Os07t0467850-00
Chr07	irgsp1_rep	five_prime_UTR	16664117	16664293	.	-	.	Parent=Os07t0467850-00
Chr07	irgsp1_rep	five_prime_UTR	16663114	16663196	.	-	.	Parent=Os07t0467850-00
Chr07	irgsp1_rep	five_prime_UTR	16662285	16662490	.	-	.	Parent=Os07t0467850-00
Chr07	irgsp1_rep	five_prime_UTR	16661818	16661859	.	-	.	Parent=Os07t0467850-00
Chr07	irgsp1_rep	five_prime_UTR	16661038	16661081	.	-	.	Parent=Os07t0467850-00
Chr07	irgsp1_rep	CDS	16660945	16661037	.	-	0	Parent=Os07t0467850-00
Chr07	irgsp1_rep	CDS	16660659	16660854	.	-	0	Parent=Os07t0467850-00
Chr07	irgsp1_rep	CDS	16660464	16660571	.	-	2	Parent=Os07t0467850-00
Chr07	irgsp1_rep	CDS	16660251	16660375	.	-	2	Parent=Os07t0467850-00
Chr07	irgsp1_rep	three_prime_UTR	16660195	16660250	.	-	.	Parent=Os07t0467850-00
Chr07	irgsp1_rep	mRNA	16660287	16669984	.	+	.	ID=Os07t0467900-01;Name=Os07t0467900-01;Locus_id=Os07g0467900;Oryzabase Gene Name Synonym(s)=NAD(P)H-quinone oxidoreductase chain 2;Note=Similar to DNA primase.;Transcript_evidence=AK073933 (DDBJ%2C Best hit);ORF_evidence=NP_001154775.1 (RefSeq);GO=Biological Process: DNA replication (GO:0006260),Molecular Function: DNA primase activity (GO:0003896);InterPro=DNA primase%2C UL52/UL70 type%2C Herpesviridae (IPR004340);NIAS_FLcDNA=J033076F17;Oryzabase=12440;TENOR=Os07t0467900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	16660287	16660302	.	+	.	Parent=Os07t0467900-01
Chr07	irgsp1_rep	CDS	16660303	16660375	.	+	0	Parent=Os07t0467900-01
Chr07	irgsp1_rep	CDS	16660464	16660594	.	+	2	Parent=Os07t0467900-01
Chr07	irgsp1_rep	CDS	16660684	16660853	.	+	0	Parent=Os07t0467900-01
Chr07	irgsp1_rep	CDS	16660944	16661090	.	+	1	Parent=Os07t0467900-01
Chr07	irgsp1_rep	CDS	16661827	16661878	.	+	1	Parent=Os07t0467900-01
Chr07	irgsp1_rep	CDS	16662304	16662478	.	+	0	Parent=Os07t0467900-01
Chr07	irgsp1_rep	CDS	16663102	16663184	.	+	2	Parent=Os07t0467900-01
Chr07	irgsp1_rep	CDS	16664107	16664319	.	+	0	Parent=Os07t0467900-01
Chr07	irgsp1_rep	CDS	16665429	16665560	.	+	0	Parent=Os07t0467900-01
Chr07	irgsp1_rep	CDS	16666096	16666231	.	+	0	Parent=Os07t0467900-01
Chr07	irgsp1_rep	CDS	16666745	16666852	.	+	2	Parent=Os07t0467900-01
Chr07	irgsp1_rep	CDS	16667424	16667489	.	+	2	Parent=Os07t0467900-01
Chr07	irgsp1_rep	CDS	16667569	16667828	.	+	2	Parent=Os07t0467900-01
Chr07	irgsp1_rep	CDS	16667922	16668014	.	+	0	Parent=Os07t0467900-01
Chr07	irgsp1_rep	three_prime_UTR	16668015	16668026	.	+	.	Parent=Os07t0467900-01
Chr07	irgsp1_rep	three_prime_UTR	16668971	16669317	.	+	.	Parent=Os07t0467900-01
Chr07	irgsp1_rep	three_prime_UTR	16669602	16669984	.	+	.	Parent=Os07t0467900-01
Chr07	irgsp1_rep	mRNA	16674227	16675326	.	+	.	ID=Os07t0468100-01;Name=Os07t0468100-01;Locus_id=Os07g0468100;CGSNL Gene Symbol=GSTU46;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 46;Oryzabase Gene Symbol Synonym(s)=OsGSTU46;Note=Similar to Glutathione S-transferase GST 19 (EC 2.5.1.18).;Transcript_evidence=AK069604 (DDBJ%2C Best hit);ORF_evidence=Q9SES7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=J023025D08;Oryzabase=9563;Expression=AK069604;TENOR=Os07t0468100-01;KEGG=Os07t0468100-01 (EC:2.5.1.18)
Chr07	irgsp1_rep	five_prime_UTR	16674227	16674395	.	+	.	Parent=Os07t0468100-01
Chr07	irgsp1_rep	CDS	16674396	16675094	.	+	0	Parent=Os07t0468100-01
Chr07	irgsp1_rep	three_prime_UTR	16675095	16675326	.	+	.	Parent=Os07t0468100-01
Chr07	irgsp1_rep	mRNA	16674303	16675314	.	+	.	ID=Os07t0468100-02;Name=Os07t0468100-02;Locus_id=Os07g0468100;CGSNL Gene Symbol=GSTU46;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 46;Oryzabase Gene Symbol Synonym(s)=OsGSTU46;Note=Similar to Glutathione S-transferase GST 19 (EC 2.5.1.18).;Transcript_evidence=AK105890 (DDBJ%2C Best hit);ORF_evidence=B7EUJ2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=001-204-E06;Oryzabase=9563;Expression=AK105890;TENOR=Os07t0468100-02;KEGG=Os07t0468100-02 (EC:2.5.1.18)
Chr07	irgsp1_rep	five_prime_UTR	16674303	16674395	.	+	.	Parent=Os07t0468100-02
Chr07	irgsp1_rep	CDS	16674396	16675094	.	+	0	Parent=Os07t0468100-02
Chr07	irgsp1_rep	three_prime_UTR	16675095	16675314	.	+	.	Parent=Os07t0468100-02
Chr07	irgsp1_rep	mRNA	16723268	16726019	.	+	.	ID=Os07t0468500-01;Name=Os07t0468500-01;Locus_id=Os07g0468500;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=AK073028 (DDBJ%2C Best hit);ORF_evidence=B9FX46 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591);NIAS_FLcDNA=J023144H14;TENOR=Os07t0468500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	16723268	16723455	.	+	.	Parent=Os07t0468500-01
Chr07	irgsp1_rep	CDS	16723456	16724817	.	+	0	Parent=Os07t0468500-01
Chr07	irgsp1_rep	three_prime_UTR	16724818	16726019	.	+	.	Parent=Os07t0468500-01
Chr07	irgsp1_rep	mRNA	16734528	16735712	.	-	.	ID=Os07t0468900-01;Name=Os07t0468900-01;Locus_id=Os07g0468900;Note=Hypothetical gene.;Transcript_evidence=AK109042 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-154-D04;Expression=AK109042;TENOR=Os07t0468900-01;KEGG=Os07t0468900-01
Chr07	irgsp1_rep	five_prime_UTR	16735712	16735712	.	-	.	Parent=Os07t0468900-01
Chr07	irgsp1_rep	CDS	16735145	16735711	.	-	0	Parent=Os07t0468900-01
Chr07	irgsp1_rep	three_prime_UTR	16734528	16735144	.	-	.	Parent=Os07t0468900-01
Chr07	irgsp1_rep	mRNA	16732847	16735148	.	-	.	ID=Os07t0468900-02;Name=Os07t0468900-02;Locus_id=Os07g0468900;Note=Hypothetical conserved gene.;Transcript_evidence=AK062868 (DDBJ%2C Best hit);ORF_evidence=Q6K434 (UniProt);NIAS_FLcDNA=001-108-B12;Expression=AK062868;TENOR=Os07t0468900-02;KEGG=Os07t0468900-02
Chr07	irgsp1_rep	five_prime_UTR	16734899	16735148	.	-	.	Parent=Os07t0468900-02
Chr07	irgsp1_rep	five_prime_UTR	16733252	16733293	.	-	.	Parent=Os07t0468900-02
Chr07	irgsp1_rep	CDS	16733153	16733251	.	-	0	Parent=Os07t0468900-02
Chr07	irgsp1_rep	three_prime_UTR	16732847	16733152	.	-	.	Parent=Os07t0468900-02
Chr07	irgsp1_rep	mRNA	16743570	16745390	.	+	.	ID=Os07t0469100-01;Name=Os07t0469100-01;Locus_id=Os07g0469100;Note=Similar to Thylakoid membrane phosphoprotein 14 kDa%2C chloroplast precursor.;Transcript_evidence=AK120365 (DDBJ%2C Best hit);ORF_evidence=B6TLG2 (UniProt);NIAS_FLcDNA=J013068P10;Expression=AK120365;TENOR=Os07t0469100-01;KEGG=Os07t0469100-01
Chr07	irgsp1_rep	five_prime_UTR	16743570	16743644	.	+	.	Parent=Os07t0469100-01
Chr07	irgsp1_rep	CDS	16743645	16743753	.	+	0	Parent=Os07t0469100-01
Chr07	irgsp1_rep	CDS	16743836	16743930	.	+	2	Parent=Os07t0469100-01
Chr07	irgsp1_rep	CDS	16744074	16744160	.	+	0	Parent=Os07t0469100-01
Chr07	irgsp1_rep	CDS	16744266	16744328	.	+	0	Parent=Os07t0469100-01
Chr07	irgsp1_rep	CDS	16744438	16744475	.	+	0	Parent=Os07t0469100-01
Chr07	irgsp1_rep	CDS	16745102	16745162	.	+	1	Parent=Os07t0469100-01
Chr07	irgsp1_rep	three_prime_UTR	16745163	16745390	.	+	.	Parent=Os07t0469100-01
Chr07	irgsp1_rep	mRNA	16743595	16745394	.	+	.	ID=Os07t0469100-02;Name=Os07t0469100-02;Locus_id=Os07g0469100;Note=Similar to Thylakoid membrane phosphoprotein 14 kDa%2C chloroplast precursor.;Transcript_evidence=AK061626 (DDBJ%2C Best hit);ORF_evidence=B6TLG2 (UniProt);NIAS_FLcDNA=001-034-E09;Expression=AK061626;TENOR=Os07t0469100-02;KEGG=Os07t0469100-02
Chr07	irgsp1_rep	five_prime_UTR	16743595	16743644	.	+	.	Parent=Os07t0469100-02
Chr07	irgsp1_rep	CDS	16743645	16743753	.	+	0	Parent=Os07t0469100-02
Chr07	irgsp1_rep	CDS	16743836	16743930	.	+	2	Parent=Os07t0469100-02
Chr07	irgsp1_rep	CDS	16744074	16744160	.	+	0	Parent=Os07t0469100-02
Chr07	irgsp1_rep	CDS	16744266	16744328	.	+	0	Parent=Os07t0469100-02
Chr07	irgsp1_rep	CDS	16744438	16744475	.	+	0	Parent=Os07t0469100-02
Chr07	irgsp1_rep	CDS	16745102	16745162	.	+	1	Parent=Os07t0469100-02
Chr07	irgsp1_rep	three_prime_UTR	16745163	16745394	.	+	.	Parent=Os07t0469100-02
Chr07	irgsp1_rep	mRNA	16748942	16749655	.	+	.	ID=Os07t0469200-02;Name=Os07t0469200-02;Locus_id=Os07g0469200;Note=Similar to predicted protein.;Transcript_evidence=AK071662 (DDBJ%2C Best hit),AK100843 (DDBJ%2C Best hit);ORF_evidence=B9FX48 (UniProt);NIAS_FLcDNA=J023106O11,J023123G06;Expression=AK071662;TENOR=Os07t0469200-02;KEGG=Os07t0469200-02
Chr07	irgsp1_rep	five_prime_UTR	16748942	16749080	.	+	.	Parent=Os07t0469200-02
Chr07	irgsp1_rep	CDS	16749081	16749290	.	+	0	Parent=Os07t0469200-02
Chr07	irgsp1_rep	three_prime_UTR	16749291	16749655	.	+	.	Parent=Os07t0469200-02
Chr07	irgsp1_rep	mRNA	16769346	16769543	.	+	.	ID=Os07t0469600-01;Name=Os07t0469600-01;Locus_id=Os07g0469600;Note=Non-protein coding transcript.;Transcript_evidence=AK060723 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-031-G03;TENOR=Os07t0469600-01
Chr07	irgsp1_rep	exon	16769346	16769543	.	+	.	Parent=Os07t0469600-01
Chr07	irgsp1_rep	mRNA	16771757	16774798	.	+	.	ID=Os07t0469701-01;Name=Os07t0469701-01;Locus_id=Os07g0469701;Note=Similar to Transposon Dart DNA%2C complete sequence.;Transcript_evidence=AK289003 (DDBJ%2C Best hit);ORF_evidence=Q587Q6 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J090088N18;TENOR=Os07t0469701-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	16771757	16771758	.	+	.	Parent=Os07t0469701-01
Chr07	irgsp1_rep	CDS	16771759	16772151	.	+	0	Parent=Os07t0469701-01
Chr07	irgsp1_rep	three_prime_UTR	16772152	16774798	.	+	.	Parent=Os07t0469701-01
Chr07	irgsp1_rep	mRNA	16810993	16811432	.	+	.	ID=Os07t0470300-00;Name=Os07t0470300-00;Locus_id=Os07g0470300;Note=Similar to 60S acidic ribosomal protein P2A.;Transcript_evidence=EU970121 (DDBJ);ORF_evidence=A5X2V3 (UniProt);GO=Biological Process: translational elongation (GO:0006414),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein 60S (IPR001813);TENOR=Os07t0470300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	16810993	16811322	.	+	0	Parent=Os07t0470300-00
Chr07	irgsp1_rep	three_prime_UTR	16811323	16811432	.	+	.	Parent=Os07t0470300-00
Chr07	irgsp1_rep	mRNA	16815629	16816839	.	-	.	ID=Os07t0470400-02;Name=Os07t0470400-02;Locus_id=Os07g0470400;Note=Conserved hypothetical protein.;Transcript_evidence=AK108677 (DDBJ%2C Best hit),AK111137 (DDBJ%2C Best hit);ORF_evidence=A2YL46 (UniProt);NIAS_FLcDNA=002-149-A06,002-176-D10;Expression=AK108677;TENOR=Os07t0470400-02;KEGG=Os07t0470400-02
Chr07	irgsp1_rep	five_prime_UTR	16816799	16816839	.	-	.	Parent=Os07t0470400-02
Chr07	irgsp1_rep	CDS	16816508	16816798	.	-	0	Parent=Os07t0470400-02
Chr07	irgsp1_rep	three_prime_UTR	16815629	16816507	.	-	.	Parent=Os07t0470400-02
Chr07	irgsp1_rep	mRNA	16857192	16862625	.	+	.	ID=Os07t0470700-01;Name=Os07t0470700-01;Locus_id=Os07g0470700;Note=PAP fibrillin family protein.;Transcript_evidence=AK120675 (DDBJ%2C Best hit);ORF_evidence=XP_002891617.1 (RefSeq);GO=Cellular Component: chloroplast (GO:0009507),Molecular Function: structural molecule activity (GO:0005198);InterPro=Plastid lipid-associated protein/fibrillin conserved domain (IPR006843);NIAS_FLcDNA=J013161M19;Expression=AK120675;TENOR=Os07t0470700-01;KEGG=Os07t0470700-01
Chr07	irgsp1_rep	five_prime_UTR	16857192	16857230	.	+	.	Parent=Os07t0470700-01
Chr07	irgsp1_rep	CDS	16857231	16857498	.	+	0	Parent=Os07t0470700-01
Chr07	irgsp1_rep	CDS	16857578	16857633	.	+	2	Parent=Os07t0470700-01
Chr07	irgsp1_rep	CDS	16858236	16858310	.	+	0	Parent=Os07t0470700-01
Chr07	irgsp1_rep	CDS	16858443	16858562	.	+	0	Parent=Os07t0470700-01
Chr07	irgsp1_rep	CDS	16860150	16860341	.	+	0	Parent=Os07t0470700-01
Chr07	irgsp1_rep	CDS	16860573	16860656	.	+	0	Parent=Os07t0470700-01
Chr07	irgsp1_rep	CDS	16860746	16860835	.	+	0	Parent=Os07t0470700-01
Chr07	irgsp1_rep	CDS	16861411	16861464	.	+	0	Parent=Os07t0470700-01
Chr07	irgsp1_rep	CDS	16861585	16861664	.	+	0	Parent=Os07t0470700-01
Chr07	irgsp1_rep	CDS	16862102	16862212	.	+	1	Parent=Os07t0470700-01
Chr07	irgsp1_rep	CDS	16862286	16862364	.	+	1	Parent=Os07t0470700-01
Chr07	irgsp1_rep	three_prime_UTR	16862365	16862625	.	+	.	Parent=Os07t0470700-01
Chr07	irgsp1_rep	mRNA	16863015	16867157	.	-	.	ID=Os07t0470800-00;Name=Os07t0470800-00;Locus_id=Os07g0470800;Oryzabase Gene Symbol Synonym(s)=OsDjC59;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C59;Note=Hypothetical conserved gene.;Transcript_evidence=BT061371 (DDBJ);ORF_evidence=NP_001059604.2 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095);Oryzabase=12216;TENOR=Os07t0470800-00;KEGG=Os07t0470800-00
Chr07	irgsp1_rep	five_prime_UTR	16867123	16867157	.	-	.	Parent=Os07t0470800-00
Chr07	irgsp1_rep	CDS	16866988	16867122	.	-	0	Parent=Os07t0470800-00
Chr07	irgsp1_rep	CDS	16865840	16865932	.	-	0	Parent=Os07t0470800-00
Chr07	irgsp1_rep	CDS	16864523	16864658	.	-	0	Parent=Os07t0470800-00
Chr07	irgsp1_rep	CDS	16864046	16864316	.	-	2	Parent=Os07t0470800-00
Chr07	irgsp1_rep	CDS	16863841	16863895	.	-	1	Parent=Os07t0470800-00
Chr07	irgsp1_rep	CDS	16863279	16863353	.	-	0	Parent=Os07t0470800-00
Chr07	irgsp1_rep	three_prime_UTR	16863015	16863278	.	-	.	Parent=Os07t0470800-00
Chr07	irgsp1_rep	mRNA	16870468	16875323	.	+	.	ID=Os07t0471000-01;Name=Os07t0471000-01;Locus_id=Os07g0471000;RAP-DB Gene Symbol Synonym(s)=IRE1%2C OsIRE1%2C OsIre1;RAP-DB Gene Name Synonym(s)=INOSITOL REQUIRING 1%2C endoplasmic reticulum (ER) stress sensor IRE1;CGSNL Gene Symbol=IRE1;CGSNL Gene Name=INOSITOL REQUIRING 1;Oryzabase Gene Symbol Synonym(s)=IRE1%2C OsIRE1%2C OsIre1;Oryzabase Gene Name Synonym(s)=endoplasmic reticulum (ER) stress sensor IRE1;Note=Endoplasmic reticulum (ER) stress sensor%2C Transducer of ER stress%2C ER stress response;Transcript_evidence=AB031396,AK068617;ORF_evidence=Q9FS17,Q7XIT1;GO=Biological Process: mRNA processing (GO:0006397),Biological Process: protein phosphorylation (GO:0006468),Molecular Function: ribonuclease activity (GO:0004540),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine/threonine/dual specificity protein kinase%2C catalytic  domain (IPR002290),KEN domain (IPR010513),PUG domain (IPR006567),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J013155E19;Manual Curation=April 21%2C 2015;Literature_PMID=12040100,22050533,22199238;Oryzabase=10081;Expression=AK068617;TENOR=Os07t0471000-01;KEGG=Os07t0471000-01
Chr07	irgsp1_rep	five_prime_UTR	16870468	16870727	.	+	.	Parent=Os07t0471000-01
Chr07	irgsp1_rep	CDS	16870728	16871017	.	+	0	Parent=Os07t0471000-01
Chr07	irgsp1_rep	CDS	16871608	16871803	.	+	1	Parent=Os07t0471000-01
Chr07	irgsp1_rep	CDS	16871888	16873221	.	+	0	Parent=Os07t0471000-01
Chr07	irgsp1_rep	CDS	16873504	16873676	.	+	1	Parent=Os07t0471000-01
Chr07	irgsp1_rep	CDS	16873836	16874082	.	+	2	Parent=Os07t0471000-01
Chr07	irgsp1_rep	CDS	16874178	16874472	.	+	1	Parent=Os07t0471000-01
Chr07	irgsp1_rep	CDS	16874995	16875141	.	+	0	Parent=Os07t0471000-01
Chr07	irgsp1_rep	three_prime_UTR	16875142	16875323	.	+	.	Parent=Os07t0471000-01
Chr07	irgsp1_rep	mRNA	16883793	16887883	.	-	.	ID=Os07t0471050-01;Name=Os07t0471050-01;Locus_id=Os07g0471050;Note=Hypothetical gene.;Transcript_evidence=AK288834 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090074A09;TENOR=Os07t0471050-01;KEGG=Os07t0471050-01
Chr07	irgsp1_rep	five_prime_UTR	16887307	16887883	.	-	.	Parent=Os07t0471050-01
Chr07	irgsp1_rep	CDS	16886935	16887306	.	-	0	Parent=Os07t0471050-01
Chr07	irgsp1_rep	three_prime_UTR	16883793	16886934	.	-	.	Parent=Os07t0471050-01
Chr07	irgsp1_rep	mRNA	16886901	16890362	.	+	.	ID=Os07t0471100-01;Name=Os07t0471100-01;Locus_id=Os07g0471100;Oryzabase Gene Symbol Synonym(s)=OsSET26%2C SDG731;Oryzabase Gene Name Synonym(s)=SET protein 26;Note=SET domain containing protein.;Transcript_evidence=AK103840 (DDBJ%2C Best hit);ORF_evidence=B8B5Y2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=SET domain (IPR001214),Rubisco LS methyltransferase%2C substrate-binding domain (IPR015353);NIAS_FLcDNA=J033148I08;Oryzabase=13390;Expression=AK103840;TENOR=Os07t0471100-01;KEGG=Os07t0471100-01
Chr07	irgsp1_rep	five_prime_UTR	16886901	16887001	.	+	.	Parent=Os07t0471100-01
Chr07	irgsp1_rep	CDS	16887002	16887120	.	+	0	Parent=Os07t0471100-01
Chr07	irgsp1_rep	CDS	16887217	16887370	.	+	1	Parent=Os07t0471100-01
Chr07	irgsp1_rep	CDS	16888329	16888460	.	+	0	Parent=Os07t0471100-01
Chr07	irgsp1_rep	CDS	16888543	16888683	.	+	0	Parent=Os07t0471100-01
Chr07	irgsp1_rep	CDS	16889050	16889307	.	+	0	Parent=Os07t0471100-01
Chr07	irgsp1_rep	CDS	16889436	16890071	.	+	0	Parent=Os07t0471100-01
Chr07	irgsp1_rep	three_prime_UTR	16890072	16890362	.	+	.	Parent=Os07t0471100-01
Chr07	irgsp1_rep	mRNA	16893333	16895018	.	-	.	ID=Os07t0471200-01;Name=Os07t0471200-01;Locus_id=Os07g0471200;Note=Hypothetical protein.;Transcript_evidence=AK111455 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-183-C03;Expression=AK111455;TENOR=Os07t0471200-01;KEGG=Os07t0471200-01
Chr07	irgsp1_rep	five_prime_UTR	16894146	16895018	.	-	.	Parent=Os07t0471200-01
Chr07	irgsp1_rep	CDS	16893342	16894145	.	-	0	Parent=Os07t0471200-01
Chr07	irgsp1_rep	three_prime_UTR	16893333	16893341	.	-	.	Parent=Os07t0471200-01
Chr07	irgsp1_rep	mRNA	16893630	16900204	.	+	.	ID=Os07t0471300-01;Name=Os07t0471300-01;Locus_id=Os07g0471300;RAP-DB Gene Symbol Synonym(s)=AGO18;RAP-DB Gene Name Synonym(s)=Argonaute 18;CGSNL Gene Symbol=AGO18;CGSNL Gene Name=ARGONAUTE 18;Oryzabase Gene Symbol Synonym(s)=OsAGO18;Oryzabase Gene Name Synonym(s)=Protein argonaute 18%2C Argonaute18;Note=Argonaute (AGO) protein%2C Broad-spectrum virus resistance%2C Male gametophyte development;Transcript_evidence=AK069685 (truncated),Inferred from literature;ORF_evidence=Q69UP6;GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515);InterPro=PAZ domain superfamily (IPR036085),Ribonuclease H-like superfamily (IPR012337),Ribonuclease H superfamily (IPR036397),Protein argonaute%2C N-terminal (IPR032474),Argonaute%2C linker 1 domain (IPR014811),PAZ domain (IPR003100),Argonaute linker 2 domain (IPR032472),Protein argonaute%2C Mid domain (IPR032473),Piwi domain (IPR003165);NIAS_FLcDNA=J023030E13 (truncated);Manual Curation=March 12%2C 2020;Literature_PMID=32157461,18826656;Oryzabase=8267;TENOR=Os07t0471300-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	16893630	16894496	.	+	0	Parent=Os07t0471300-01
Chr07	irgsp1_rep	CDS	16894578	16894921	.	+	0	Parent=Os07t0471300-01
Chr07	irgsp1_rep	CDS	16895023	16895153	.	+	1	Parent=Os07t0471300-01
Chr07	irgsp1_rep	CDS	16895250	16895371	.	+	2	Parent=Os07t0471300-01
Chr07	irgsp1_rep	CDS	16895456	16895562	.	+	0	Parent=Os07t0471300-01
Chr07	irgsp1_rep	CDS	16895683	16895815	.	+	1	Parent=Os07t0471300-01
Chr07	irgsp1_rep	CDS	16895921	16896037	.	+	0	Parent=Os07t0471300-01
Chr07	irgsp1_rep	CDS	16896139	16896246	.	+	0	Parent=Os07t0471300-01
Chr07	irgsp1_rep	CDS	16896338	16896409	.	+	0	Parent=Os07t0471300-01
Chr07	irgsp1_rep	CDS	16897041	16897163	.	+	0	Parent=Os07t0471300-01
Chr07	irgsp1_rep	CDS	16897250	16897412	.	+	0	Parent=Os07t0471300-01
Chr07	irgsp1_rep	CDS	16897719	16897843	.	+	2	Parent=Os07t0471300-01
Chr07	irgsp1_rep	CDS	16897934	16898068	.	+	0	Parent=Os07t0471300-01
Chr07	irgsp1_rep	CDS	16898153	16898256	.	+	0	Parent=Os07t0471300-01
Chr07	irgsp1_rep	CDS	16898351	16898413	.	+	1	Parent=Os07t0471300-01
Chr07	irgsp1_rep	CDS	16898509	16898572	.	+	1	Parent=Os07t0471300-01
Chr07	irgsp1_rep	CDS	16898765	16898897	.	+	0	Parent=Os07t0471300-01
Chr07	irgsp1_rep	CDS	16898993	16899066	.	+	2	Parent=Os07t0471300-01
Chr07	irgsp1_rep	CDS	16899182	16899276	.	+	0	Parent=Os07t0471300-01
Chr07	irgsp1_rep	CDS	16899378	16899409	.	+	1	Parent=Os07t0471300-01
Chr07	irgsp1_rep	CDS	16899780	16899934	.	+	2	Parent=Os07t0471300-01
Chr07	irgsp1_rep	three_prime_UTR	16899935	16900204	.	+	.	Parent=Os07t0471300-01
Chr07	irgsp1_rep	mRNA	16930374	16933496	.	+	.	ID=Os07t0471683-01;Name=Os07t0471683-01;Locus_id=Os07g0471683;Note=Hypothetical conserved gene.;Transcript_evidence=AK289112 (DDBJ%2C Best hit);ORF_evidence=B8B5Y5 (UniProt);NIAS_FLcDNA=J090096P07;TENOR=Os07t0471683-01;KEGG=Os07t0471683-01
Chr07	irgsp1_rep	five_prime_UTR	16930374	16932244	.	+	.	Parent=Os07t0471683-01
Chr07	irgsp1_rep	CDS	16932245	16932655	.	+	0	Parent=Os07t0471683-01
Chr07	irgsp1_rep	three_prime_UTR	16932656	16933496	.	+	.	Parent=Os07t0471683-01
Chr07	irgsp1_rep	mRNA	16933763	16938607	.	+	.	ID=Os07t0471900-00;Name=Os07t0471900-00;Locus_id=Os07g0471900;Oryzabase Gene Symbol Synonym(s)=OsbHLH077;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 077;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001059610.2 (RefSeq);InterPro=Helix-loop-helix DNA-binding (IPR011598);Oryzabase=15364;TENOR=Os07t0471900-00;KEGG=Os07t0471900-00
Chr07	irgsp1_rep	CDS	16933763	16934596	.	+	0	Parent=Os07t0471900-00
Chr07	irgsp1_rep	CDS	16934913	16935041	.	+	0	Parent=Os07t0471900-00
Chr07	irgsp1_rep	CDS	16936258	16936329	.	+	0	Parent=Os07t0471900-00
Chr07	irgsp1_rep	CDS	16936738	16936803	.	+	0	Parent=Os07t0471900-00
Chr07	irgsp1_rep	CDS	16937998	16938036	.	+	0	Parent=Os07t0471900-00
Chr07	irgsp1_rep	CDS	16938437	16938607	.	+	0	Parent=Os07t0471900-00
Chr07	irgsp1_rep	mRNA	16944094	16946832	.	-	.	ID=Os07t0472100-00;Name=Os07t0472100-00;Locus_id=Os07g0472100;Note=Hypothetical conserved gene.;Transcript_evidence=BT066350 (DDBJ);ORF_evidence=Q8L4S1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os07t0472100-00;KEGG=Os07t0472100-00
Chr07	irgsp1_rep	CDS	16944094	16946832	.	-	0	Parent=Os07t0472100-00
Chr07	irgsp1_rep	mRNA	16950160	16954807	.	+	.	ID=Os07t0472200-01;Name=Os07t0472200-01;Locus_id=Os07g0472200;Oryzabase Gene Symbol Synonym(s)=OsLOL2;Note=Similar to Zinc-finger protein Lsd1.;Transcript_evidence=AK061509 (DDBJ%2C Best hit);ORF_evidence=Q69UP7 (UniProt);InterPro=Zinc finger%2C LSD1-type (IPR005735);NIAS_FLcDNA=006-309-F08;Oryzabase=19844;Expression=AK061509;TENOR=Os07t0472200-01;KEGG=Os07t0472200-01
Chr07	irgsp1_rep	five_prime_UTR	16950160	16950791	.	+	.	Parent=Os07t0472200-01
Chr07	irgsp1_rep	five_prime_UTR	16950884	16951061	.	+	.	Parent=Os07t0472200-01
Chr07	irgsp1_rep	five_prime_UTR	16951382	16951434	.	+	.	Parent=Os07t0472200-01
Chr07	irgsp1_rep	CDS	16951435	16951450	.	+	0	Parent=Os07t0472200-01
Chr07	irgsp1_rep	CDS	16951773	16951883	.	+	2	Parent=Os07t0472200-01
Chr07	irgsp1_rep	CDS	16954001	16954114	.	+	2	Parent=Os07t0472200-01
Chr07	irgsp1_rep	CDS	16954283	16954395	.	+	2	Parent=Os07t0472200-01
Chr07	irgsp1_rep	CDS	16954470	16954559	.	+	0	Parent=Os07t0472200-01
Chr07	irgsp1_rep	three_prime_UTR	16954560	16954807	.	+	.	Parent=Os07t0472200-01
Chr07	irgsp1_rep	mRNA	16955691	16960436	.	-	.	ID=Os07t0472300-01;Name=Os07t0472300-01;Locus_id=Os07g0472300;Note=Conserved hypothetical protein.;Transcript_evidence=AK070792 (DDBJ%2C Best hit);ORF_evidence=B9FX58 (UniProt);NIAS_FLcDNA=J023065F23;Expression=AK070792;TENOR=Os07t0472300-01;KEGG=Os07t0472300-01
Chr07	irgsp1_rep	five_prime_UTR	16960376	16960436	.	-	.	Parent=Os07t0472300-01
Chr07	irgsp1_rep	five_prime_UTR	16959573	16959615	.	-	.	Parent=Os07t0472300-01
Chr07	irgsp1_rep	CDS	16958003	16959572	.	-	0	Parent=Os07t0472300-01
Chr07	irgsp1_rep	CDS	16957782	16957904	.	-	2	Parent=Os07t0472300-01
Chr07	irgsp1_rep	CDS	16957446	16957697	.	-	2	Parent=Os07t0472300-01
Chr07	irgsp1_rep	CDS	16956199	16956266	.	-	2	Parent=Os07t0472300-01
Chr07	irgsp1_rep	three_prime_UTR	16955691	16956198	.	-	.	Parent=Os07t0472300-01
Chr07	irgsp1_rep	mRNA	16966933	16969895	.	+	.	ID=Os07t0472400-01;Name=Os07t0472400-01;Locus_id=Os07g0472400;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK105684 (DDBJ%2C Best hit);ORF_evidence=XP_002884066.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-201-B08;Expression=AK105684;TENOR=Os07t0472400-01;KEGG=Os07t0472400-01 (EC:2.7.11.1)
Chr07	irgsp1_rep	five_prime_UTR	16966933	16966933	.	+	.	Parent=Os07t0472400-01
Chr07	irgsp1_rep	CDS	16966934	16967275	.	+	0	Parent=Os07t0472400-01
Chr07	irgsp1_rep	CDS	16968245	16968292	.	+	0	Parent=Os07t0472400-01
Chr07	irgsp1_rep	CDS	16968374	16969615	.	+	0	Parent=Os07t0472400-01
Chr07	irgsp1_rep	three_prime_UTR	16969616	16969895	.	+	.	Parent=Os07t0472400-01
Chr07	irgsp1_rep	mRNA	16971981	16984817	.	+	.	ID=Os07t0472500-01;Name=Os07t0472500-01;Locus_id=Os07g0472500;Note=Similar to Myosin heavy chain-like protein (Fragment).;Transcript_evidence=AK066964 (DDBJ%2C Best hit);ORF_evidence=Q84VF9 (UniProt);GO=Biological Process: protein targeting to Golgi (GO:0000042),Molecular Function: protein binding (GO:0005515);InterPro=GRIP (IPR000237);NIAS_FLcDNA=J013092J24;Expression=AK066964;TENOR=Os07t0472500-01;KEGG=Os07t0472500-01
Chr07	irgsp1_rep	five_prime_UTR	16971981	16972191	.	+	.	Parent=Os07t0472500-01
Chr07	irgsp1_rep	CDS	16972192	16972657	.	+	0	Parent=Os07t0472500-01
Chr07	irgsp1_rep	CDS	16975189	16975304	.	+	2	Parent=Os07t0472500-01
Chr07	irgsp1_rep	CDS	16975618	16975787	.	+	0	Parent=Os07t0472500-01
Chr07	irgsp1_rep	CDS	16976088	16976181	.	+	1	Parent=Os07t0472500-01
Chr07	irgsp1_rep	CDS	16976950	16977036	.	+	0	Parent=Os07t0472500-01
Chr07	irgsp1_rep	CDS	16977108	16977188	.	+	0	Parent=Os07t0472500-01
Chr07	irgsp1_rep	CDS	16977379	16977504	.	+	0	Parent=Os07t0472500-01
Chr07	irgsp1_rep	CDS	16978120	16978228	.	+	0	Parent=Os07t0472500-01
Chr07	irgsp1_rep	CDS	16978302	16978381	.	+	2	Parent=Os07t0472500-01
Chr07	irgsp1_rep	CDS	16978980	16979108	.	+	0	Parent=Os07t0472500-01
Chr07	irgsp1_rep	CDS	16979184	16979284	.	+	0	Parent=Os07t0472500-01
Chr07	irgsp1_rep	CDS	16979654	16979787	.	+	1	Parent=Os07t0472500-01
Chr07	irgsp1_rep	CDS	16979886	16979983	.	+	2	Parent=Os07t0472500-01
Chr07	irgsp1_rep	CDS	16980067	16980186	.	+	0	Parent=Os07t0472500-01
Chr07	irgsp1_rep	CDS	16981509	16981536	.	+	0	Parent=Os07t0472500-01
Chr07	irgsp1_rep	CDS	16981645	16981697	.	+	2	Parent=Os07t0472500-01
Chr07	irgsp1_rep	CDS	16982025	16982096	.	+	0	Parent=Os07t0472500-01
Chr07	irgsp1_rep	CDS	16982184	16982231	.	+	0	Parent=Os07t0472500-01
Chr07	irgsp1_rep	CDS	16982507	16982612	.	+	0	Parent=Os07t0472500-01
Chr07	irgsp1_rep	CDS	16982689	16982747	.	+	2	Parent=Os07t0472500-01
Chr07	irgsp1_rep	CDS	16984503	16984613	.	+	0	Parent=Os07t0472500-01
Chr07	irgsp1_rep	three_prime_UTR	16984614	16984817	.	+	.	Parent=Os07t0472500-01
Chr07	irgsp1_rep	mRNA	17009778	17010266	.	-	.	ID=Os07t0472900-00;Name=Os07t0472900-00;Locus_id=Os07g0472900;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001059615.1 (RefSeq);TENOR=Os07t0472900-00;KEGG=Os07t0472900-00
Chr07	irgsp1_rep	CDS	17009778	17010266	.	-	0	Parent=Os07t0472900-00
Chr07	irgsp1_rep	mRNA	17089451	17091096	.	+	.	ID=Os07t0474300-01;Name=Os07t0474300-01;Locus_id=Os07g0474300;Note=Conserved hypothetical protein.;Transcript_evidence=AK108961 (DDBJ%2C Best hit);ORF_evidence=A2YL69 (UniProt);NIAS_FLcDNA=002-153-D03;Expression=AK108961;TENOR=Os07t0474300-01;KEGG=Os07t0474300-01
Chr07	irgsp1_rep	five_prime_UTR	17089451	17089516	.	+	.	Parent=Os07t0474300-01
Chr07	irgsp1_rep	five_prime_UTR	17089626	17089664	.	+	.	Parent=Os07t0474300-01
Chr07	irgsp1_rep	CDS	17089665	17089785	.	+	0	Parent=Os07t0474300-01
Chr07	irgsp1_rep	CDS	17090127	17090752	.	+	2	Parent=Os07t0474300-01
Chr07	irgsp1_rep	three_prime_UTR	17090753	17091096	.	+	.	Parent=Os07t0474300-01
Chr07	irgsp1_rep	mRNA	17116440	17120414	.	+	.	ID=Os07t0474600-01;Name=Os07t0474600-01;Locus_id=Os07g0474600;Note=Similar to Mycolic acid methyl transferase-like protein.;Transcript_evidence=AK111684 (DDBJ%2C Best hit);ORF_evidence=NP_001147782.1 (RefSeq);GO=Biological Process: lipid biosynthetic process (GO:0008610);InterPro=Mycolic acid cyclopropane synthase (IPR003333);NIAS_FLcDNA=J013169K10;Expression=AK111684;TENOR=Os07t0474600-01;KEGG=Os07t0474600-01 (EC:2.1.1.79)
Chr07	irgsp1_rep	five_prime_UTR	17116440	17116440	.	+	.	Parent=Os07t0474600-01
Chr07	irgsp1_rep	CDS	17116441	17116479	.	+	0	Parent=Os07t0474600-01
Chr07	irgsp1_rep	CDS	17116635	17116730	.	+	0	Parent=Os07t0474600-01
Chr07	irgsp1_rep	CDS	17116880	17116938	.	+	0	Parent=Os07t0474600-01
Chr07	irgsp1_rep	CDS	17117059	17117182	.	+	1	Parent=Os07t0474600-01
Chr07	irgsp1_rep	CDS	17117323	17117385	.	+	0	Parent=Os07t0474600-01
Chr07	irgsp1_rep	CDS	17117487	17117546	.	+	0	Parent=Os07t0474600-01
Chr07	irgsp1_rep	CDS	17117674	17117835	.	+	0	Parent=Os07t0474600-01
Chr07	irgsp1_rep	CDS	17118163	17118236	.	+	0	Parent=Os07t0474600-01
Chr07	irgsp1_rep	CDS	17118327	17118557	.	+	1	Parent=Os07t0474600-01
Chr07	irgsp1_rep	CDS	17119779	17119859	.	+	1	Parent=Os07t0474600-01
Chr07	irgsp1_rep	CDS	17120038	17120221	.	+	1	Parent=Os07t0474600-01
Chr07	irgsp1_rep	three_prime_UTR	17120222	17120414	.	+	.	Parent=Os07t0474600-01
Chr07	irgsp1_rep	mRNA	17126204	17129929	.	+	.	ID=Os07t0474700-01;Name=Os07t0474700-01;Locus_id=Os07g0474700;Note=Similar to cDNA%2C clone: J090064H24%2C full insert sequence.;Transcript_evidence=AK071906 (DDBJ%2C Best hit);ORF_evidence=B7F9Q7 (UniProt);NIAS_FLcDNA=J013066P19;TENOR=Os07t0474700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	17126204	17126540	.	+	.	Parent=Os07t0474700-01
Chr07	irgsp1_rep	CDS	17126541	17126787	.	+	0	Parent=Os07t0474700-01
Chr07	irgsp1_rep	CDS	17127243	17127277	.	+	2	Parent=Os07t0474700-01
Chr07	irgsp1_rep	three_prime_UTR	17127278	17129046	.	+	.	Parent=Os07t0474700-01
Chr07	irgsp1_rep	three_prime_UTR	17129254	17129929	.	+	.	Parent=Os07t0474700-01
Chr07	irgsp1_rep	mRNA	17136166	17144612	.	+	.	ID=Os07t0475000-01;Name=Os07t0475000-01;Locus_id=Os07g0475000;Note=Conserved hypothetical protein.;Transcript_evidence=AK068238 (DDBJ%2C Best hit);ORF_evidence=A3BJN7 (UniProt);NIAS_FLcDNA=J013149J12;Expression=AK068238;TENOR=Os07t0475000-01;KEGG=Os07t0475000-01
Chr07	irgsp1_rep	five_prime_UTR	17136166	17136167	.	+	.	Parent=Os07t0475000-01
Chr07	irgsp1_rep	CDS	17136168	17136666	.	+	0	Parent=Os07t0475000-01
Chr07	irgsp1_rep	CDS	17144251	17144492	.	+	2	Parent=Os07t0475000-01
Chr07	irgsp1_rep	three_prime_UTR	17144493	17144612	.	+	.	Parent=Os07t0475000-01
Chr07	irgsp1_rep	mRNA	17162250	17165698	.	-	.	ID=Os07t0475400-01;Name=Os07t0475400-01;Locus_id=Os07g0475400;Note=Similar to Expansin-like protein A (Fragment).;Transcript_evidence=AK102489 (DDBJ%2C Best hit);ORF_evidence=Q8H274 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);NIAS_FLcDNA=J033094N24;Expression=AK102489;TENOR=Os07t0475400-01;KEGG=Os07t0475400-01
Chr07	irgsp1_rep	five_prime_UTR	17165540	17165698	.	-	.	Parent=Os07t0475400-01
Chr07	irgsp1_rep	CDS	17165392	17165539	.	-	0	Parent=Os07t0475400-01
Chr07	irgsp1_rep	CDS	17165147	17165268	.	-	2	Parent=Os07t0475400-01
Chr07	irgsp1_rep	CDS	17164139	17164317	.	-	0	Parent=Os07t0475400-01
Chr07	irgsp1_rep	CDS	17163002	17163134	.	-	1	Parent=Os07t0475400-01
Chr07	irgsp1_rep	CDS	17162620	17162868	.	-	0	Parent=Os07t0475400-01
Chr07	irgsp1_rep	three_prime_UTR	17162250	17162619	.	-	.	Parent=Os07t0475400-01
Chr07	irgsp1_rep	mRNA	17186673	17187640	.	+	.	ID=Os07t0475700-01;Name=Os07t0475700-01;Locus_id=Os07g0475700;CGSNL Gene Symbol=SAUR30;CGSNL Gene Name=SMALL AUXIN-UP RNA 30;Oryzabase Gene Symbol Synonym(s)=OsSAUR30;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 30;Note=Auxin responsive SAUR protein family protein.;Transcript_evidence=AK060076 (DDBJ%2C Best hit);ORF_evidence=A2YL74 (UniProt);InterPro=Auxin responsive SAUR protein (IPR003676);NIAS_FLcDNA=006-306-B11;Oryzabase=9155;Expression=AK060076;TENOR=Os07t0475700-01;KEGG=Os07t0475700-01
Chr07	irgsp1_rep	five_prime_UTR	17186673	17186786	.	+	.	Parent=Os07t0475700-01
Chr07	irgsp1_rep	CDS	17186787	17187149	.	+	0	Parent=Os07t0475700-01
Chr07	irgsp1_rep	three_prime_UTR	17187150	17187640	.	+	.	Parent=Os07t0475700-01
Chr07	irgsp1_rep	mRNA	17195348	17196977	.	-	.	ID=Os07t0475800-01;Name=Os07t0475800-01;Locus_id=Os07g0475800;Note=Eukaryotic rRNA processing family protein.;Transcript_evidence=AK071007 (DDBJ%2C Best hit);ORF_evidence=NP_188905.1 (RefSeq);InterPro=Eukaryotic rRNA processing (IPR008610);NIAS_FLcDNA=J023075L15;Expression=AK071007;TENOR=Os07t0475800-01;KEGG=Os07t0475800-01
Chr07	irgsp1_rep	five_prime_UTR	17196846	17196977	.	-	.	Parent=Os07t0475800-01
Chr07	irgsp1_rep	five_prime_UTR	17196474	17196478	.	-	.	Parent=Os07t0475800-01
Chr07	irgsp1_rep	CDS	17195598	17196473	.	-	0	Parent=Os07t0475800-01
Chr07	irgsp1_rep	three_prime_UTR	17195348	17195597	.	-	.	Parent=Os07t0475800-01
Chr07	irgsp1_rep	mRNA	17198555	17208207	.	-	.	ID=Os07t0475900-01;Name=Os07t0475900-01;Locus_id=Os07g0475900;RAP-DB Gene Symbol Synonym(s)=OsACTPK2;CGSNL Gene Symbol=ACTPK2;CGSNL Gene Name=ACT DOMAIN CONTAINING PROTEIN KINASE 2;Oryzabase Gene Symbol Synonym(s)=OsACTPK2;Oryzabase Gene Name Synonym(s)=ACT domain containing protein kinase 2;Note=ACT domain containing protein kinase;Transcript_evidence=AK066198;ORF_evidence=Q0D6I5;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),ACT domain (IPR002912),Protein kinase domain (IPR000719),Serine-threonine/tyrosine-protein kinase%2C catalytic domain (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J013056N03;Manual Curation=October 15%2C 2020;Literature_PMID=29356222;Oryzabase=22316;TENOR=Os07t0475900-01
Chr07	irgsp1_rep	five_prime_UTR	17207791	17208207	.	-	.	Parent=Os07t0475900-01
Chr07	irgsp1_rep	CDS	17207755	17207790	.	-	0	Parent=Os07t0475900-01
Chr07	irgsp1_rep	CDS	17207013	17207113	.	-	0	Parent=Os07t0475900-01
Chr07	irgsp1_rep	CDS	17205751	17205805	.	-	1	Parent=Os07t0475900-01
Chr07	irgsp1_rep	CDS	17204244	17204354	.	-	0	Parent=Os07t0475900-01
Chr07	irgsp1_rep	CDS	17202884	17202931	.	-	0	Parent=Os07t0475900-01
Chr07	irgsp1_rep	CDS	17202272	17202447	.	-	0	Parent=Os07t0475900-01
Chr07	irgsp1_rep	CDS	17202094	17202201	.	-	1	Parent=Os07t0475900-01
Chr07	irgsp1_rep	CDS	17201329	17201402	.	-	1	Parent=Os07t0475900-01
Chr07	irgsp1_rep	CDS	17201018	17201190	.	-	2	Parent=Os07t0475900-01
Chr07	irgsp1_rep	CDS	17200439	17200534	.	-	0	Parent=Os07t0475900-01
Chr07	irgsp1_rep	CDS	17199492	17199572	.	-	0	Parent=Os07t0475900-01
Chr07	irgsp1_rep	CDS	17199341	17199394	.	-	0	Parent=Os07t0475900-01
Chr07	irgsp1_rep	CDS	17198960	17199091	.	-	0	Parent=Os07t0475900-01
Chr07	irgsp1_rep	CDS	17198795	17198866	.	-	0	Parent=Os07t0475900-01
Chr07	irgsp1_rep	three_prime_UTR	17198555	17198794	.	-	.	Parent=Os07t0475900-01
Chr07	irgsp1_rep	mRNA	17230234	17245273	.	-	.	ID=Os07t0476200-01;Name=Os07t0476200-01;Locus_id=Os07g0476200;Note=Tetratricopeptide TPR-1 domain containing protein.;Transcript_evidence=AK067379 (DDBJ%2C Best hit);ORF_evidence=B9FX65 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide TPR-1 (IPR001440),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J013102L05;TENOR=Os07t0476200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	17244931	17245273	.	-	.	Parent=Os07t0476200-01
Chr07	irgsp1_rep	CDS	17244790	17244930	.	-	0	Parent=Os07t0476200-01
Chr07	irgsp1_rep	CDS	17244112	17244178	.	-	0	Parent=Os07t0476200-01
Chr07	irgsp1_rep	CDS	17243785	17243976	.	-	2	Parent=Os07t0476200-01
Chr07	irgsp1_rep	CDS	17242501	17242601	.	-	2	Parent=Os07t0476200-01
Chr07	irgsp1_rep	CDS	17240707	17240793	.	-	0	Parent=Os07t0476200-01
Chr07	irgsp1_rep	CDS	17240504	17240620	.	-	0	Parent=Os07t0476200-01
Chr07	irgsp1_rep	CDS	17240358	17240421	.	-	0	Parent=Os07t0476200-01
Chr07	irgsp1_rep	CDS	17240066	17240280	.	-	2	Parent=Os07t0476200-01
Chr07	irgsp1_rep	CDS	17239850	17239934	.	-	0	Parent=Os07t0476200-01
Chr07	irgsp1_rep	CDS	17238578	17238678	.	-	2	Parent=Os07t0476200-01
Chr07	irgsp1_rep	CDS	17238406	17238498	.	-	0	Parent=Os07t0476200-01
Chr07	irgsp1_rep	CDS	17237053	17237121	.	-	0	Parent=Os07t0476200-01
Chr07	irgsp1_rep	CDS	17236801	17236851	.	-	0	Parent=Os07t0476200-01
Chr07	irgsp1_rep	three_prime_UTR	17236752	17236800	.	-	.	Parent=Os07t0476200-01
Chr07	irgsp1_rep	three_prime_UTR	17236416	17236673	.	-	.	Parent=Os07t0476200-01
Chr07	irgsp1_rep	three_prime_UTR	17235520	17235600	.	-	.	Parent=Os07t0476200-01
Chr07	irgsp1_rep	three_prime_UTR	17235289	17235450	.	-	.	Parent=Os07t0476200-01
Chr07	irgsp1_rep	three_prime_UTR	17234684	17234779	.	-	.	Parent=Os07t0476200-01
Chr07	irgsp1_rep	three_prime_UTR	17233773	17233874	.	-	.	Parent=Os07t0476200-01
Chr07	irgsp1_rep	three_prime_UTR	17233583	17233690	.	-	.	Parent=Os07t0476200-01
Chr07	irgsp1_rep	three_prime_UTR	17233265	17233489	.	-	.	Parent=Os07t0476200-01
Chr07	irgsp1_rep	three_prime_UTR	17232696	17232962	.	-	.	Parent=Os07t0476200-01
Chr07	irgsp1_rep	three_prime_UTR	17232540	17232611	.	-	.	Parent=Os07t0476200-01
Chr07	irgsp1_rep	three_prime_UTR	17231214	17231510	.	-	.	Parent=Os07t0476200-01
Chr07	irgsp1_rep	three_prime_UTR	17230234	17230948	.	-	.	Parent=Os07t0476200-01
Chr07	irgsp1_rep	mRNA	17230466	17245273	.	-	.	ID=Os07t0476200-02;Name=Os07t0476200-02;Locus_id=Os07g0476200;Note=Similar to PAF1 complex component.;Transcript_evidence=AK121737 (DDBJ%2C Best hit);ORF_evidence=XP_002326116.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide TPR-1 (IPR001440),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J033084J09;Expression=AK121737;TENOR=Os07t0476200-02;KEGG=Os07t0476200-02
Chr07	irgsp1_rep	five_prime_UTR	17244931	17245273	.	-	.	Parent=Os07t0476200-02
Chr07	irgsp1_rep	CDS	17244790	17244930	.	-	0	Parent=Os07t0476200-02
Chr07	irgsp1_rep	CDS	17244112	17244178	.	-	0	Parent=Os07t0476200-02
Chr07	irgsp1_rep	CDS	17243785	17243976	.	-	2	Parent=Os07t0476200-02
Chr07	irgsp1_rep	CDS	17242501	17242601	.	-	2	Parent=Os07t0476200-02
Chr07	irgsp1_rep	CDS	17240707	17240793	.	-	0	Parent=Os07t0476200-02
Chr07	irgsp1_rep	CDS	17240504	17240620	.	-	0	Parent=Os07t0476200-02
Chr07	irgsp1_rep	CDS	17240358	17240421	.	-	0	Parent=Os07t0476200-02
Chr07	irgsp1_rep	CDS	17240066	17240280	.	-	2	Parent=Os07t0476200-02
Chr07	irgsp1_rep	CDS	17239850	17239934	.	-	0	Parent=Os07t0476200-02
Chr07	irgsp1_rep	CDS	17238578	17238678	.	-	2	Parent=Os07t0476200-02
Chr07	irgsp1_rep	CDS	17238406	17238498	.	-	0	Parent=Os07t0476200-02
Chr07	irgsp1_rep	CDS	17237053	17237121	.	-	0	Parent=Os07t0476200-02
Chr07	irgsp1_rep	CDS	17236752	17236844	.	-	0	Parent=Os07t0476200-02
Chr07	irgsp1_rep	CDS	17236416	17236673	.	-	0	Parent=Os07t0476200-02
Chr07	irgsp1_rep	CDS	17235520	17235600	.	-	0	Parent=Os07t0476200-02
Chr07	irgsp1_rep	CDS	17235289	17235450	.	-	0	Parent=Os07t0476200-02
Chr07	irgsp1_rep	CDS	17234684	17234779	.	-	0	Parent=Os07t0476200-02
Chr07	irgsp1_rep	CDS	17233773	17233874	.	-	0	Parent=Os07t0476200-02
Chr07	irgsp1_rep	CDS	17233583	17233690	.	-	0	Parent=Os07t0476200-02
Chr07	irgsp1_rep	CDS	17233265	17233489	.	-	0	Parent=Os07t0476200-02
Chr07	irgsp1_rep	CDS	17232696	17232962	.	-	0	Parent=Os07t0476200-02
Chr07	irgsp1_rep	CDS	17232540	17232611	.	-	0	Parent=Os07t0476200-02
Chr07	irgsp1_rep	CDS	17231214	17231510	.	-	0	Parent=Os07t0476200-02
Chr07	irgsp1_rep	CDS	17230832	17230948	.	-	0	Parent=Os07t0476200-02
Chr07	irgsp1_rep	three_prime_UTR	17230466	17230831	.	-	.	Parent=Os07t0476200-02
Chr07	irgsp1_rep	mRNA	17230268	17233627	.	-	.	ID=Os07t0476200-03;Name=Os07t0476200-03;Locus_id=Os07g0476200;Note=Similar to PAF1 complex component.;Transcript_evidence=AK103823 (DDBJ%2C Best hit);ORF_evidence=XP_002326116.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026);NIAS_FLcDNA=J033147J02;Expression=AK103823;TENOR=Os07t0476200-03;KEGG=Os07t0476200-03
Chr07	irgsp1_rep	CDS	17233583	17233627	.	-	0	Parent=Os07t0476200-03
Chr07	irgsp1_rep	CDS	17233241	17233489	.	-	0	Parent=Os07t0476200-03
Chr07	irgsp1_rep	three_prime_UTR	17232696	17233240	.	-	.	Parent=Os07t0476200-03
Chr07	irgsp1_rep	three_prime_UTR	17232540	17232611	.	-	.	Parent=Os07t0476200-03
Chr07	irgsp1_rep	three_prime_UTR	17231214	17231510	.	-	.	Parent=Os07t0476200-03
Chr07	irgsp1_rep	three_prime_UTR	17230268	17230948	.	-	.	Parent=Os07t0476200-03
Chr07	irgsp1_rep	mRNA	17251265	17254046	.	-	.	ID=Os07t0476401-00;Name=Os07t0476401-00;Locus_id=Os07g0476401;Note=Similar to K-exchanger-like protein.;Transcript_evidence=AK364519 (DDBJ);ORF_evidence=NP_001148199.1 (RefSeq);TENOR=Os07t0476401-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	17253818	17254046	.	-	.	Parent=Os07t0476401-00
Chr07	irgsp1_rep	five_prime_UTR	17252793	17253016	.	-	.	Parent=Os07t0476401-00
Chr07	irgsp1_rep	five_prime_UTR	17251571	17251745	.	-	.	Parent=Os07t0476401-00
Chr07	irgsp1_rep	CDS	17251265	17251570	.	-	0	Parent=Os07t0476401-00
Chr07	irgsp1_rep	mRNA	17254973	17260556	.	-	.	ID=Os07t0476500-01;Name=Os07t0476500-01;Locus_id=Os07g0476500;RAP-DB Gene Symbol Synonym(s)=OsCYP21-4;RAP-DB Gene Name Synonym(s)=cyclophilin 21-4;CGSNL Gene Symbol=CYP21-4;CGSNL Gene Name=CYCLOPHILIN 21-4;Oryzabase Gene Symbol Synonym(s)=OsCYP21-4%2C OsCYP-19%2C OsCYP21-2a%2C OsCYP21-2b%2C OsCYP21-2c;Oryzabase Gene Name Synonym(s)=cyclophilin 21-4%2C cyclophilin 19;Note=Cyclophilin 21 protein%2C Oxidative stress tolerance%2C Regulation of peroxidase activity;Transcript_evidence=AK066346;ORF_evidence=Q7EYT3;GO=Biological Process: protein peptidyl-prolyl isomerization (GO:0000413),Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);InterPro=Cyclophilin-like domain superfamily (IPR029000),Cyclophilin-type peptidyl-prolyl cis-trans isomerase (IPR024936),Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain (IPR002130);NIAS_FLcDNA=J013061P09;Manual Curation=December 3%2C 2019;Literature_PMID=31786704,26483814;Oryzabase=10063;Expression=AK066346;TENOR=Os07t0476500-01;KEGG=Os07t0476500-01 (EC:5.2.1.8);Subcellular location=Golgi cis cisternae (GO:0000137), Golgi trans cisternae (GO:0000138)
Chr07	irgsp1_rep	five_prime_UTR	17260419	17260556	.	-	.	Parent=Os07t0476500-01
Chr07	irgsp1_rep	five_prime_UTR	17259661	17259712	.	-	.	Parent=Os07t0476500-01
Chr07	irgsp1_rep	CDS	17259509	17259660	.	-	0	Parent=Os07t0476500-01
Chr07	irgsp1_rep	CDS	17259353	17259392	.	-	1	Parent=Os07t0476500-01
Chr07	irgsp1_rep	CDS	17258812	17258862	.	-	0	Parent=Os07t0476500-01
Chr07	irgsp1_rep	CDS	17257910	17257995	.	-	0	Parent=Os07t0476500-01
Chr07	irgsp1_rep	CDS	17256016	17256153	.	-	1	Parent=Os07t0476500-01
Chr07	irgsp1_rep	CDS	17255764	17255911	.	-	1	Parent=Os07t0476500-01
Chr07	irgsp1_rep	CDS	17255290	17255382	.	-	0	Parent=Os07t0476500-01
Chr07	irgsp1_rep	three_prime_UTR	17254973	17255289	.	-	.	Parent=Os07t0476500-01
Chr07	irgsp1_rep	mRNA	17268782	17269949	.	+	.	ID=Os07t0476900-01;Name=Os07t0476900-01;Locus_id=Os07g0476900;Oryzabase Gene Symbol Synonym(s)=CDSP32;Oryzabase Gene Name Synonym(s)=Thioredoxin CDSP32%2C Trx CDSP32;Note=Thioredoxin domain 2 containing protein.;Transcript_evidence=AK066045 (DDBJ%2C Best hit);ORF_evidence=Q84NN4 (UniProt);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Thioredoxin (IPR005746),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766);NIAS_FLcDNA=J013049P20;Oryzabase=14055;Expression=AK066045;TENOR=Os07t0476900-01;KEGG=Os07t0476900-01
Chr07	irgsp1_rep	five_prime_UTR	17268782	17268890	.	+	.	Parent=Os07t0476900-01
Chr07	irgsp1_rep	CDS	17268891	17269796	.	+	0	Parent=Os07t0476900-01
Chr07	irgsp1_rep	three_prime_UTR	17269797	17269949	.	+	.	Parent=Os07t0476900-01
Chr07	irgsp1_rep	mRNA	17270903	17274278	.	-	.	ID=Os07t0477000-01;Name=Os07t0477000-01;Locus_id=Os07g0477000;Note=RNA polymerase Rpb7%2C N-terminal domain containing protein.;Transcript_evidence=AK059952 (DDBJ%2C Best hit);ORF_evidence=NP_001147612.1 (RefSeq);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899);InterPro=RNA polymerase Rpb7%2C N-terminal (IPR005576),RNA polymerase III%2C subunit Rpc25 (IPR013238),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=006-211-B10;Expression=AK059952;TENOR=Os07t0477000-01;KEGG=Os07t0477000-01 (EC:2.7.7.6)
Chr07	irgsp1_rep	five_prime_UTR	17274105	17274278	.	-	.	Parent=Os07t0477000-01
Chr07	irgsp1_rep	five_prime_UTR	17273548	17273554	.	-	.	Parent=Os07t0477000-01
Chr07	irgsp1_rep	CDS	17273437	17273547	.	-	0	Parent=Os07t0477000-01
Chr07	irgsp1_rep	CDS	17273210	17273305	.	-	0	Parent=Os07t0477000-01
Chr07	irgsp1_rep	CDS	17272696	17272783	.	-	0	Parent=Os07t0477000-01
Chr07	irgsp1_rep	CDS	17271941	17272004	.	-	2	Parent=Os07t0477000-01
Chr07	irgsp1_rep	CDS	17271445	17271514	.	-	1	Parent=Os07t0477000-01
Chr07	irgsp1_rep	CDS	17271269	17271358	.	-	0	Parent=Os07t0477000-01
Chr07	irgsp1_rep	CDS	17271094	17271183	.	-	0	Parent=Os07t0477000-01
Chr07	irgsp1_rep	three_prime_UTR	17270903	17271093	.	-	.	Parent=Os07t0477000-01
Chr07	irgsp1_rep	mRNA	17276190	17276684	.	-	.	ID=Os07t0477250-00;Name=Os07t0477250-00;Locus_id=Os07g0477250;Note=Similar to S-adenosylmethionine synthetase 2.;Transcript_evidence=ab initio prediction;ORF_evidence=P93438 (UniProt);GO=Biological Process: S-adenosylmethionine biosynthetic process (GO:0006556),Molecular Function: methionine adenosyltransferase activity (GO:0004478),Molecular Function: ATP binding (GO:0005524);InterPro=S-adenosylmethionine synthetase (IPR002133),S-adenosylmethionine synthetase%2C N-terminal (IPR022628),S-adenosylmethionine synthetase%2C central domain (IPR022629),S-adenosylmethionine synthetase%2C conserved site (IPR022631),S-adenosylmethionine synthetase superfamily (IPR022636);TENOR=Os07t0477250-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	17276190	17276684	.	-	0	Parent=Os07t0477250-00
Chr07	irgsp1_rep	mRNA	17277620	17283511	.	+	.	ID=Os07t0477500-01;Name=Os07t0477500-01;Locus_id=Os07g0477500;Note=Histone deacetylation protein Rxt3 domain containing protein.;Transcript_evidence=AK066181 (DDBJ%2C Best hit);ORF_evidence=B8B602 (UniProt);InterPro=Histone deacetylation protein Rxt3 (IPR013951);NIAS_FLcDNA=J013059C01;Expression=AK066181;TENOR=Os07t0477500-01;KEGG=Os07t0477500-01
Chr07	irgsp1_rep	five_prime_UTR	17277620	17277851	.	+	.	Parent=Os07t0477500-01
Chr07	irgsp1_rep	five_prime_UTR	17278963	17279050	.	+	.	Parent=Os07t0477500-01
Chr07	irgsp1_rep	CDS	17279051	17280357	.	+	0	Parent=Os07t0477500-01
Chr07	irgsp1_rep	CDS	17280489	17280496	.	+	1	Parent=Os07t0477500-01
Chr07	irgsp1_rep	CDS	17280892	17281067	.	+	2	Parent=Os07t0477500-01
Chr07	irgsp1_rep	CDS	17281401	17281461	.	+	0	Parent=Os07t0477500-01
Chr07	irgsp1_rep	CDS	17281534	17281632	.	+	2	Parent=Os07t0477500-01
Chr07	irgsp1_rep	CDS	17281734	17281828	.	+	2	Parent=Os07t0477500-01
Chr07	irgsp1_rep	CDS	17281990	17282103	.	+	0	Parent=Os07t0477500-01
Chr07	irgsp1_rep	CDS	17282247	17282314	.	+	0	Parent=Os07t0477500-01
Chr07	irgsp1_rep	CDS	17282513	17282623	.	+	1	Parent=Os07t0477500-01
Chr07	irgsp1_rep	CDS	17282735	17282969	.	+	1	Parent=Os07t0477500-01
Chr07	irgsp1_rep	CDS	17283065	17283175	.	+	0	Parent=Os07t0477500-01
Chr07	irgsp1_rep	three_prime_UTR	17283176	17283511	.	+	.	Parent=Os07t0477500-01
Chr07	irgsp1_rep	mRNA	17282102	17285379	.	-	.	ID=Os07t0477866-01;Name=Os07t0477866-01;Locus_id=Os07g0477866;Note=Hypothetical gene.;Transcript_evidence=AK288814 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090072H17;TENOR=Os07t0477866-01;KEGG=Os07t0477866-01
Chr07	irgsp1_rep	five_prime_UTR	17285379	17285379	.	-	.	Parent=Os07t0477866-01
Chr07	irgsp1_rep	CDS	17285040	17285378	.	-	0	Parent=Os07t0477866-01
Chr07	irgsp1_rep	three_prime_UTR	17284860	17285039	.	-	.	Parent=Os07t0477866-01
Chr07	irgsp1_rep	three_prime_UTR	17282659	17283701	.	-	.	Parent=Os07t0477866-01
Chr07	irgsp1_rep	three_prime_UTR	17282102	17282579	.	-	.	Parent=Os07t0477866-01
Chr07	irgsp1_rep	mRNA	17377536	17383707	.	+	.	ID=Os07t0478932-01;Name=Os07t0478932-01;Locus_id=Os07g0478932;Note=Hypothetical gene.;Transcript_evidence=AK288261 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090015P07;TENOR=Os07t0478932-01;KEGG=Os07t0478932-01
Chr07	irgsp1_rep	five_prime_UTR	17377536	17381072	.	+	.	Parent=Os07t0478932-01
Chr07	irgsp1_rep	CDS	17381073	17381480	.	+	0	Parent=Os07t0478932-01
Chr07	irgsp1_rep	three_prime_UTR	17381481	17383707	.	+	.	Parent=Os07t0478932-01
Chr07	irgsp1_rep	mRNA	17400026	17403033	.	+	.	ID=Os07t0479100-01;Name=Os07t0479100-01;Locus_id=Os07g0479100;Oryzabase Gene Symbol Synonym(s)=OsRFPH2-17;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPH2-17%2C RING-H2 protein 17;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK103576 (DDBJ%2C Best hit);ORF_evidence=NP_001150850.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J033132P09;Oryzabase=11778;Expression=AK103576;TENOR=Os07t0479100-01;KEGG=Os07t0479100-01
Chr07	irgsp1_rep	five_prime_UTR	17400026	17400094	.	+	.	Parent=Os07t0479100-01
Chr07	irgsp1_rep	CDS	17400095	17400272	.	+	0	Parent=Os07t0479100-01
Chr07	irgsp1_rep	CDS	17400925	17401103	.	+	2	Parent=Os07t0479100-01
Chr07	irgsp1_rep	CDS	17401439	17401522	.	+	0	Parent=Os07t0479100-01
Chr07	irgsp1_rep	CDS	17402419	17402583	.	+	0	Parent=Os07t0479100-01
Chr07	irgsp1_rep	CDS	17402674	17402817	.	+	0	Parent=Os07t0479100-01
Chr07	irgsp1_rep	three_prime_UTR	17402818	17403033	.	+	.	Parent=Os07t0479100-01
Chr07	irgsp1_rep	mRNA	17400717	17403054	.	+	.	ID=Os07t0479100-02;Name=Os07t0479100-02;Locus_id=Os07g0479100;Oryzabase Gene Symbol Synonym(s)=OsRFPH2-17;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPH2-17%2C RING-H2 protein 17;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK069812 (DDBJ%2C Best hit);ORF_evidence=NP_001150850.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J023031G24;Oryzabase=11778;Expression=AK069812;TENOR=Os07t0479100-02;KEGG=Os07t0479100-02
Chr07	irgsp1_rep	five_prime_UTR	17400717	17400884	.	+	.	Parent=Os07t0479100-02
Chr07	irgsp1_rep	CDS	17400885	17401103	.	+	0	Parent=Os07t0479100-02
Chr07	irgsp1_rep	CDS	17401439	17401522	.	+	0	Parent=Os07t0479100-02
Chr07	irgsp1_rep	CDS	17402419	17402583	.	+	0	Parent=Os07t0479100-02
Chr07	irgsp1_rep	CDS	17402674	17402817	.	+	0	Parent=Os07t0479100-02
Chr07	irgsp1_rep	three_prime_UTR	17402818	17403054	.	+	.	Parent=Os07t0479100-02
Chr07	irgsp1_rep	mRNA	17404341	17405033	.	-	.	ID=Os07t0479150-01;Name=Os07t0479150-01;Locus_id=Os07g0479150;Note=Hypothetical protein.;Transcript_evidence=AK108177 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-140-A07;TENOR=Os07t0479150-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	17405033	17405033	.	-	.	Parent=Os07t0479150-01
Chr07	irgsp1_rep	CDS	17404727	17405032	.	-	0	Parent=Os07t0479150-01
Chr07	irgsp1_rep	three_prime_UTR	17404341	17404726	.	-	.	Parent=Os07t0479150-01
Chr07	irgsp1_rep	mRNA	17404649	17409779	.	+	.	ID=Os07t0479200-01;Name=Os07t0479200-01;Locus_id=Os07g0479200;Note=Similar to SL15-like (Fragment).;Transcript_evidence=AK058326 (DDBJ%2C Best hit);ORF_evidence=B6TBT4 (UniProt);InterPro=Cystinosin/ERS1p repeat (IPR006603),Mannose-P-dolichol utilization defect 1 protein (IPR016817);NIAS_FLcDNA=001-014-B11;Expression=AK058326;TENOR=Os07t0479200-01;KEGG=Os07t0479200-01
Chr07	irgsp1_rep	five_prime_UTR	17404649	17404756	.	+	.	Parent=Os07t0479200-01
Chr07	irgsp1_rep	CDS	17404757	17404930	.	+	0	Parent=Os07t0479200-01
Chr07	irgsp1_rep	CDS	17407353	17407506	.	+	0	Parent=Os07t0479200-01
Chr07	irgsp1_rep	CDS	17407607	17407679	.	+	2	Parent=Os07t0479200-01
Chr07	irgsp1_rep	CDS	17407832	17407898	.	+	1	Parent=Os07t0479200-01
Chr07	irgsp1_rep	CDS	17407986	17408045	.	+	0	Parent=Os07t0479200-01
Chr07	irgsp1_rep	CDS	17408324	17408384	.	+	0	Parent=Os07t0479200-01
Chr07	irgsp1_rep	CDS	17408659	17408700	.	+	2	Parent=Os07t0479200-01
Chr07	irgsp1_rep	CDS	17409327	17409430	.	+	2	Parent=Os07t0479200-01
Chr07	irgsp1_rep	three_prime_UTR	17409431	17409779	.	+	.	Parent=Os07t0479200-01
Chr07	irgsp1_rep	mRNA	17410068	17413849	.	-	.	ID=Os07t0479300-01;Name=Os07t0479300-01;Locus_id=Os07g0479300;CGSNL Gene Symbol=CPD3L;CGSNL Gene Name=TYPE III-LIKE CARBOXYPEPTIDASE;Oryzabase Gene Symbol Synonym(s)=R-CPD3L%2C cbp31%2C OsSCP39%2C SCP39;Oryzabase Gene Name Synonym(s)=Type III-like carboxypeptidase%2C type III-like CPD%2C serine carboxypeptidase-like protein%2C Serine carboxypeptidase 39;Note=Peptidase S10%2C serine carboxypeptidase family protein.;Transcript_evidence=AK120117 (DDBJ%2C Best hit);ORF_evidence=P52712 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=J013025N03;Oryzabase=13758;Expression=AK120117;TENOR=Os07t0479300-01;KEGG=Os07t0479300-01 (EC:3.4.16.-)
Chr07	irgsp1_rep	five_prime_UTR	17413795	17413849	.	-	.	Parent=Os07t0479300-01
Chr07	irgsp1_rep	CDS	17413421	17413794	.	-	0	Parent=Os07t0479300-01
Chr07	irgsp1_rep	CDS	17413174	17413348	.	-	1	Parent=Os07t0479300-01
Chr07	irgsp1_rep	CDS	17412937	17413056	.	-	0	Parent=Os07t0479300-01
Chr07	irgsp1_rep	CDS	17412468	17412611	.	-	0	Parent=Os07t0479300-01
Chr07	irgsp1_rep	CDS	17412223	17412373	.	-	0	Parent=Os07t0479300-01
Chr07	irgsp1_rep	CDS	17411901	17411989	.	-	2	Parent=Os07t0479300-01
Chr07	irgsp1_rep	CDS	17411568	17411826	.	-	0	Parent=Os07t0479300-01
Chr07	irgsp1_rep	CDS	17410724	17410857	.	-	2	Parent=Os07t0479300-01
Chr07	irgsp1_rep	CDS	17410385	17410513	.	-	0	Parent=Os07t0479300-01
Chr07	irgsp1_rep	three_prime_UTR	17410068	17410384	.	-	.	Parent=Os07t0479300-01
Chr07	irgsp1_rep	mRNA	17410063	17410786	.	-	.	ID=Os07t0479300-02;Name=Os07t0479300-02;Locus_id=Os07g0479300;CGSNL Gene Symbol=CPD3L;CGSNL Gene Name=TYPE III-LIKE CARBOXYPEPTIDASE;Oryzabase Gene Symbol Synonym(s)=R-CPD3L%2C cbp31%2C OsSCP39%2C SCP39;Oryzabase Gene Name Synonym(s)=Type III-like carboxypeptidase%2C type III-like CPD%2C serine carboxypeptidase-like protein%2C Serine carboxypeptidase 39;Note=Similar to Serine carboxypeptidase-like.;Transcript_evidence=AK059488 (DDBJ%2C Best hit);ORF_evidence=P52712 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=001-028-G07;Oryzabase=13758;Expression=AK059488;TENOR=Os07t0479300-02;KEGG=Os07t0479300-02 (EC:3.4.16.-)
Chr07	irgsp1_rep	CDS	17410724	17410786	.	-	0	Parent=Os07t0479300-02
Chr07	irgsp1_rep	CDS	17410385	17410513	.	-	0	Parent=Os07t0479300-02
Chr07	irgsp1_rep	three_prime_UTR	17410063	17410384	.	-	.	Parent=Os07t0479300-02
Chr07	irgsp1_rep	mRNA	17410041	17410322	.	-	.	ID=Os07t0479300-03;Name=Os07t0479300-03;Locus_id=Os07g0479300;CGSNL Gene Symbol=CPD3L;CGSNL Gene Name=TYPE III-LIKE CARBOXYPEPTIDASE;Oryzabase Gene Symbol Synonym(s)=R-CPD3L%2C cbp31%2C OsSCP39%2C SCP39;Oryzabase Gene Name Synonym(s)=Type III-like carboxypeptidase%2C type III-like CPD%2C serine carboxypeptidase-like protein%2C Serine carboxypeptidase 39;Note=Non-protein coding transcript.;Transcript_evidence=AK058769 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-001-F11;Oryzabase=13758;TENOR=Os07t0479300-03
Chr07	irgsp1_rep	exon	17410041	17410322	.	-	.	Parent=Os07t0479300-03
Chr07	irgsp1_rep	mRNA	17413409	17413795	.	+	.	ID=Os07t0479350-00;Name=Os07t0479350-00;Locus_id=Os07g0479350;Note=Hypothetical gene.;Transcript_evidence=EU950691 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0479350-00;KEGG=Os07t0479350-00
Chr07	irgsp1_rep	five_prime_UTR	17413409	17413507	.	+	.	Parent=Os07t0479350-00
Chr07	irgsp1_rep	CDS	17413508	17413774	.	+	0	Parent=Os07t0479350-00
Chr07	irgsp1_rep	three_prime_UTR	17413775	17413795	.	+	.	Parent=Os07t0479350-00
Chr07	irgsp1_rep	mRNA	17424507	17425421	.	-	.	ID=Os07t0479400-01;Name=Os07t0479400-01;Locus_id=Os07g0479400;Note=Snf7 domain containing protein.;Transcript_evidence=AK111095 (DDBJ%2C Best hit);ORF_evidence=B4FP46 (UniProt);NIAS_FLcDNA=002-175-G07;Expression=AK111095;TENOR=Os07t0479400-01;KEGG=Os07t0479400-01
Chr07	irgsp1_rep	five_prime_UTR	17425337	17425421	.	-	.	Parent=Os07t0479400-01
Chr07	irgsp1_rep	CDS	17425225	17425336	.	-	0	Parent=Os07t0479400-01
Chr07	irgsp1_rep	CDS	17424745	17424854	.	-	2	Parent=Os07t0479400-01
Chr07	irgsp1_rep	three_prime_UTR	17424507	17424744	.	-	.	Parent=Os07t0479400-01
Chr07	irgsp1_rep	mRNA	17424965	17425431	.	+	.	ID=Os07t0479500-01;Name=Os07t0479500-01;Locus_id=Os07g0479500;Note=Hypothetical protein.;Transcript_evidence=AK109231 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-156-F03;Expression=AK109231;TENOR=Os07t0479500-01;KEGG=Os07t0479500-01
Chr07	irgsp1_rep	five_prime_UTR	17424965	17425050	.	+	.	Parent=Os07t0479500-01
Chr07	irgsp1_rep	CDS	17425051	17425362	.	+	0	Parent=Os07t0479500-01
Chr07	irgsp1_rep	three_prime_UTR	17425363	17425431	.	+	.	Parent=Os07t0479500-01
Chr07	irgsp1_rep	mRNA	17426566	17429414	.	-	.	ID=Os07t0479600-01;Name=Os07t0479600-01;Locus_id=Os07g0479600;Note=Conserved hypothetical protein.;Transcript_evidence=AK071565 (DDBJ%2C Best hit);ORF_evidence=NP_001145484.1 (RefSeq);NIAS_FLcDNA=J023101O16;Expression=AK071565;TENOR=Os07t0479600-01;KEGG=Os07t0479600-01
Chr07	irgsp1_rep	five_prime_UTR	17427893	17429414	.	-	.	Parent=Os07t0479600-01
Chr07	irgsp1_rep	CDS	17427888	17427892	.	-	0	Parent=Os07t0479600-01
Chr07	irgsp1_rep	CDS	17427442	17427677	.	-	1	Parent=Os07t0479600-01
Chr07	irgsp1_rep	CDS	17427254	17427341	.	-	2	Parent=Os07t0479600-01
Chr07	irgsp1_rep	CDS	17426859	17426925	.	-	1	Parent=Os07t0479600-01
Chr07	irgsp1_rep	CDS	17426725	17426778	.	-	0	Parent=Os07t0479600-01
Chr07	irgsp1_rep	three_prime_UTR	17426566	17426724	.	-	.	Parent=Os07t0479600-01
Chr07	irgsp1_rep	mRNA	17454862	17455552	.	-	.	ID=Os07t0480300-00;Name=Os07t0480300-00;Locus_id=Os07g0480300;Note=Hypothetical conserved gene.;Transcript_evidence=CT836147 (DDBJ%2C Best hit);ORF_evidence=Q8GVR8 (UniProt);TENOR=Os07t0480300-00;KEGG=Os07t0480300-00
Chr07	irgsp1_rep	CDS	17455271	17455552	.	-	0	Parent=Os07t0480300-00
Chr07	irgsp1_rep	three_prime_UTR	17454862	17455270	.	-	.	Parent=Os07t0480300-00
Chr07	irgsp1_rep	mRNA	17490699	17492940	.	+	.	ID=Os07t0480800-01;Name=Os07t0480800-01;Locus_id=Os07g0480800;CGSNL Gene Symbol=XTH21;CGSNL Gene Name=XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 21;Oryzabase Gene Symbol Synonym(s)=OsXTH21;Oryzabase Gene Name Synonym(s)=xyloglucan endotransglucosylase/hydrolase%2C xyloglucan endotransglucosylase 21;Note=Cellulase (EC 3.2.1.4).;Transcript_evidence=AK243098 (DDBJ%2C Best hit);ORF_evidence=B6U5W7 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: cellular glucan metabolic process (GO:0006073),Cellular Component: cell wall (GO:0005618),Cellular Component: apoplast (GO:0048046),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762);InterPro=Glycoside hydrolase%2C family 16 (IPR000757),Concanavalin A-like lectin/glucanase (IPR008985),Xyloglucan endo-transglycosylase%2C C-terminal (IPR010713),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Xyloglucan endotransglucosylase/hydrolase (IPR016455);NIAS_FLcDNA=J100024I07;Oryzabase=6502;TENOR=Os07t0480800-01;KEGG=Os07t0480800-01 (EC:2.4.1.207%2C EC:3.2.1.4)
Chr07	irgsp1_rep	five_prime_UTR	17490699	17490886	.	+	.	Parent=Os07t0480800-01
Chr07	irgsp1_rep	CDS	17490887	17491115	.	+	0	Parent=Os07t0480800-01
Chr07	irgsp1_rep	CDS	17491628	17491728	.	+	2	Parent=Os07t0480800-01
Chr07	irgsp1_rep	CDS	17491825	17492042	.	+	0	Parent=Os07t0480800-01
Chr07	irgsp1_rep	CDS	17492123	17492480	.	+	1	Parent=Os07t0480800-01
Chr07	irgsp1_rep	three_prime_UTR	17492481	17492940	.	+	.	Parent=Os07t0480800-01
Chr07	irgsp1_rep	mRNA	17496502	17498002	.	+	.	ID=Os07t0480900-01;Name=Os07t0480900-01;Locus_id=Os07g0480900;Oryzabase Gene Symbol Synonym(s)=OsEnS-106;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 106;Note=Similar to Cysteine protease (Fragment).;Transcript_evidence=AK063422 (DDBJ%2C Best hit);ORF_evidence=B4ESE5 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase%2C cysteine peptidase active site (IPR000169),Peptidase C1A%2C papain C-terminal (IPR000668),Peptidase C1A%2C papain (IPR013128),Proteinase inhibitor I29%2C cathepsin propeptide (IPR013201);NIAS_FLcDNA=001-115-C06;Oryzabase=18408;Expression=AK063422;TENOR=Os07t0480900-01;KEGG=Os07t0480900-01
Chr07	irgsp1_rep	five_prime_UTR	17496502	17496520	.	+	.	Parent=Os07t0480900-01
Chr07	irgsp1_rep	CDS	17496521	17497108	.	+	0	Parent=Os07t0480900-01
Chr07	irgsp1_rep	CDS	17497195	17497737	.	+	0	Parent=Os07t0480900-01
Chr07	irgsp1_rep	three_prime_UTR	17497738	17498002	.	+	.	Parent=Os07t0480900-01
Chr07	irgsp1_rep	mRNA	17498648	17508665	.	+	.	ID=Os07t0481000-01;Name=Os07t0481000-01;Locus_id=Os07g0481000;Note=Similar to Pollen-specific kinase partner protein.;Transcript_evidence=AK071382 (DDBJ%2C Best hit);ORF_evidence=NP_001151267.1 (RefSeq);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C MYND-type (IPR002893);NIAS_FLcDNA=J023091N20;Expression=AK071382;TENOR=Os07t0481000-01;KEGG=Os07t0481000-01
Chr07	irgsp1_rep	five_prime_UTR	17498648	17499079	.	+	.	Parent=Os07t0481000-01
Chr07	irgsp1_rep	five_prime_UTR	17499912	17499988	.	+	.	Parent=Os07t0481000-01
Chr07	irgsp1_rep	CDS	17499989	17500093	.	+	0	Parent=Os07t0481000-01
Chr07	irgsp1_rep	CDS	17500393	17500506	.	+	0	Parent=Os07t0481000-01
Chr07	irgsp1_rep	CDS	17500703	17500821	.	+	0	Parent=Os07t0481000-01
Chr07	irgsp1_rep	CDS	17501174	17501220	.	+	1	Parent=Os07t0481000-01
Chr07	irgsp1_rep	CDS	17501299	17501399	.	+	2	Parent=Os07t0481000-01
Chr07	irgsp1_rep	CDS	17502221	17502308	.	+	0	Parent=Os07t0481000-01
Chr07	irgsp1_rep	CDS	17503007	17503115	.	+	2	Parent=Os07t0481000-01
Chr07	irgsp1_rep	CDS	17503643	17503799	.	+	1	Parent=Os07t0481000-01
Chr07	irgsp1_rep	CDS	17504348	17504419	.	+	0	Parent=Os07t0481000-01
Chr07	irgsp1_rep	CDS	17504869	17504982	.	+	0	Parent=Os07t0481000-01
Chr07	irgsp1_rep	CDS	17505074	17505190	.	+	0	Parent=Os07t0481000-01
Chr07	irgsp1_rep	three_prime_UTR	17505191	17505590	.	+	.	Parent=Os07t0481000-01
Chr07	irgsp1_rep	three_prime_UTR	17506599	17508665	.	+	.	Parent=Os07t0481000-01
Chr07	irgsp1_rep	mRNA	17499971	17508735	.	+	.	ID=Os07t0481000-02;Name=Os07t0481000-02;Locus_id=Os07g0481000;Note=Similar to MYND finger family protein.;Transcript_evidence=AK101192 (DDBJ%2C Best hit);ORF_evidence=F2EKD7 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C MYND-type (IPR002893);NIAS_FLcDNA=J033030H11;Expression=AK101192;TENOR=Os07t0481000-02;KEGG=Os07t0481000-02
Chr07	irgsp1_rep	five_prime_UTR	17499971	17499988	.	+	.	Parent=Os07t0481000-02
Chr07	irgsp1_rep	CDS	17499989	17500093	.	+	0	Parent=Os07t0481000-02
Chr07	irgsp1_rep	CDS	17500393	17500506	.	+	0	Parent=Os07t0481000-02
Chr07	irgsp1_rep	CDS	17500703	17500821	.	+	0	Parent=Os07t0481000-02
Chr07	irgsp1_rep	CDS	17501174	17501220	.	+	1	Parent=Os07t0481000-02
Chr07	irgsp1_rep	CDS	17501299	17501399	.	+	2	Parent=Os07t0481000-02
Chr07	irgsp1_rep	CDS	17502221	17502308	.	+	0	Parent=Os07t0481000-02
Chr07	irgsp1_rep	CDS	17503007	17503115	.	+	2	Parent=Os07t0481000-02
Chr07	irgsp1_rep	CDS	17503643	17503799	.	+	1	Parent=Os07t0481000-02
Chr07	irgsp1_rep	CDS	17504348	17504419	.	+	0	Parent=Os07t0481000-02
Chr07	irgsp1_rep	CDS	17504869	17504982	.	+	0	Parent=Os07t0481000-02
Chr07	irgsp1_rep	CDS	17505074	17505079	.	+	0	Parent=Os07t0481000-02
Chr07	irgsp1_rep	CDS	17505167	17505190	.	+	0	Parent=Os07t0481000-02
Chr07	irgsp1_rep	three_prime_UTR	17505191	17505590	.	+	.	Parent=Os07t0481000-02
Chr07	irgsp1_rep	three_prime_UTR	17506599	17508735	.	+	.	Parent=Os07t0481000-02
Chr07	irgsp1_rep	mRNA	17504983	17508665	.	+	.	ID=Os07t0481000-03;Name=Os07t0481000-03;Locus_id=Os07g0481000;Note=Hypothetical gene.;Transcript_evidence=AK100752 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023118M12;Expression=AK100752;TENOR=Os07t0481000-03;KEGG=Os07t0481000-03
Chr07	irgsp1_rep	five_prime_UTR	17504983	17507790	.	+	.	Parent=Os07t0481000-03
Chr07	irgsp1_rep	CDS	17507791	17508216	.	+	0	Parent=Os07t0481000-03
Chr07	irgsp1_rep	three_prime_UTR	17508217	17508665	.	+	.	Parent=Os07t0481000-03
Chr07	irgsp1_rep	mRNA	17505856	17508311	.	-	.	ID=Os07t0481100-01;Name=Os07t0481100-01;Locus_id=Os07g0481100;CGSNL Gene Symbol=ROPGEF11/12;CGSNL Gene Name=ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 11/12;Oryzabase Gene Symbol Synonym(s)=Os RopGEF11%2C OsRopGEF11%2C RopGEF11%2C Os RopGEF12%2C OsRopGEF12%2C RopGEF12%2C OsRopGEF11/12;Oryzabase Gene Name Synonym(s)=GEF for ROP 11%2C guanine nucleotide exchange factor for Rop 11%2C Rop-specific GEF11%2C Rop-specific guanine nucleotide exchange factor 11%2C GEF for ROP 12%2C guanine nucleotide exchange factor for Rop 12%2C Rop-specific GEF12%2C Rop-specific guanine nucleotide exchange factor 12;Note=Rop nucleotide exchanger%2C PRONE domain containing protein.;Transcript_evidence=AK062302 (DDBJ%2C Best hit);ORF_evidence=B4F9P8 (UniProt);GO=Molecular Function: Rho guanyl-nucleotide exchange factor activity (GO:0005089);InterPro=Plant specific Rop nucleotide exchanger%2C PRONE (IPR005512);NIAS_FLcDNA=001-100-H09;Oryzabase=11452;Expression=AK062302;TENOR=Os07t0481100-01;KEGG=Os07t0481100-01
Chr07	irgsp1_rep	five_prime_UTR	17508229	17508311	.	-	.	Parent=Os07t0481100-01
Chr07	irgsp1_rep	CDS	17507973	17508228	.	-	0	Parent=Os07t0481100-01
Chr07	irgsp1_rep	CDS	17507777	17507893	.	-	2	Parent=Os07t0481100-01
Chr07	irgsp1_rep	CDS	17507530	17507684	.	-	2	Parent=Os07t0481100-01
Chr07	irgsp1_rep	CDS	17507363	17507437	.	-	0	Parent=Os07t0481100-01
Chr07	irgsp1_rep	CDS	17506998	17507270	.	-	0	Parent=Os07t0481100-01
Chr07	irgsp1_rep	CDS	17506569	17506904	.	-	0	Parent=Os07t0481100-01
Chr07	irgsp1_rep	CDS	17506104	17506274	.	-	0	Parent=Os07t0481100-01
Chr07	irgsp1_rep	three_prime_UTR	17505856	17506103	.	-	.	Parent=Os07t0481100-01
Chr07	irgsp1_rep	mRNA	17514082	17520717	.	+	.	ID=Os07t0481200-01;Name=Os07t0481200-01;Locus_id=Os07g0481200;Note=Similar to Calmodulin-binding heat-shock protein.;Transcript_evidence=AK061465 (DDBJ%2C Best hit);ORF_evidence=NP_001149987.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921);NIAS_FLcDNA=006-308-C03;Expression=AK061465;TENOR=Os07t0481200-01;KEGG=Os07t0481200-01
Chr07	irgsp1_rep	five_prime_UTR	17514082	17514082	.	+	.	Parent=Os07t0481200-01
Chr07	irgsp1_rep	CDS	17514083	17514361	.	+	0	Parent=Os07t0481200-01
Chr07	irgsp1_rep	CDS	17514773	17514831	.	+	0	Parent=Os07t0481200-01
Chr07	irgsp1_rep	CDS	17514915	17514993	.	+	1	Parent=Os07t0481200-01
Chr07	irgsp1_rep	three_prime_UTR	17514994	17515071	.	+	.	Parent=Os07t0481200-01
Chr07	irgsp1_rep	three_prime_UTR	17515311	17515446	.	+	.	Parent=Os07t0481200-01
Chr07	irgsp1_rep	three_prime_UTR	17520311	17520717	.	+	.	Parent=Os07t0481200-01
Chr07	irgsp1_rep	mRNA	17524037	17528680	.	+	.	ID=Os07t0481300-01;Name=Os07t0481300-01;Locus_id=Os07g0481300;Note=Hypothetical conserved gene.;Transcript_evidence=AK288310 (DDBJ%2C Best hit);ORF_evidence=Q8GVQ8 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J090020I01;TENOR=Os07t0481300-01;KEGG=Os07t0481300-01
Chr07	irgsp1_rep	five_prime_UTR	17524037	17524086	.	+	.	Parent=Os07t0481300-01
Chr07	irgsp1_rep	CDS	17524087	17524386	.	+	0	Parent=Os07t0481300-01
Chr07	irgsp1_rep	CDS	17525028	17528096	.	+	0	Parent=Os07t0481300-01
Chr07	irgsp1_rep	three_prime_UTR	17528097	17528680	.	+	.	Parent=Os07t0481300-01
Chr07	irgsp1_rep	mRNA	17529809	17534987	.	-	.	ID=Os07t0481400-01;Name=Os07t0481400-01;Locus_id=Os07g0481400;Note=NB-ARC domain containing protein.;Transcript_evidence=AK121542 (DDBJ%2C Best hit);ORF_evidence=B9FX78 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182),ATPase%2C AAA+ type%2C core (IPR003593);NIAS_FLcDNA=J033031P15;Oryzabase=14947;Expression=AK121542;TENOR=Os07t0481400-01;KEGG=Os07t0481400-01
Chr07	irgsp1_rep	five_prime_UTR	17534921	17534987	.	-	.	Parent=Os07t0481400-01
Chr07	irgsp1_rep	five_prime_UTR	17534733	17534804	.	-	.	Parent=Os07t0481400-01
Chr07	irgsp1_rep	five_prime_UTR	17534330	17534351	.	-	.	Parent=Os07t0481400-01
Chr07	irgsp1_rep	CDS	17534045	17534329	.	-	0	Parent=Os07t0481400-01
Chr07	irgsp1_rep	CDS	17529850	17532807	.	-	0	Parent=Os07t0481400-01
Chr07	irgsp1_rep	three_prime_UTR	17529809	17529849	.	-	.	Parent=Os07t0481400-01
Chr07	irgsp1_rep	mRNA	17619784	17620080	.	+	.	ID=Os07t0482433-00;Name=Os07t0482433-00;Locus_id=Os07g0482433;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FX80 (UniProt);TENOR=Os07t0482433-00
Chr07	irgsp1_rep	CDS	17619784	17620080	.	+	0	Parent=Os07t0482433-00
Chr07	irgsp1_rep	mRNA	17619937	17622639	.	-	.	ID=Os07t0482566-01;Name=Os07t0482566-01;Locus_id=Os07g0482566;Note=Hypothetical gene.;Transcript_evidence=AK288634 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090055J02;TENOR=Os07t0482566-01;KEGG=Os07t0482566-01
Chr07	irgsp1_rep	five_prime_UTR	17620381	17622639	.	-	.	Parent=Os07t0482566-01
Chr07	irgsp1_rep	CDS	17619946	17620380	.	-	0	Parent=Os07t0482566-01
Chr07	irgsp1_rep	three_prime_UTR	17619937	17619945	.	-	.	Parent=Os07t0482566-01
Chr07	irgsp1_rep	mRNA	17640572	17643408	.	+	.	ID=Os07t0482887-00;Name=Os07t0482887-00;Locus_id=Os07g0482887;Note=Hypothetical protein.;Transcript_evidence=tplb0036f19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0482887-00
Chr07	irgsp1_rep	five_prime_UTR	17640572	17640653	.	+	.	Parent=Os07t0482887-00
Chr07	irgsp1_rep	five_prime_UTR	17640775	17640927	.	+	.	Parent=Os07t0482887-00
Chr07	irgsp1_rep	five_prime_UTR	17641066	17641138	.	+	.	Parent=Os07t0482887-00
Chr07	irgsp1_rep	five_prime_UTR	17641238	17641316	.	+	.	Parent=Os07t0482887-00
Chr07	irgsp1_rep	five_prime_UTR	17641420	17641499	.	+	.	Parent=Os07t0482887-00
Chr07	irgsp1_rep	five_prime_UTR	17641896	17642138	.	+	.	Parent=Os07t0482887-00
Chr07	irgsp1_rep	five_prime_UTR	17642298	17642473	.	+	.	Parent=Os07t0482887-00
Chr07	irgsp1_rep	five_prime_UTR	17642650	17642693	.	+	.	Parent=Os07t0482887-00
Chr07	irgsp1_rep	CDS	17642694	17642921	.	+	0	Parent=Os07t0482887-00
Chr07	irgsp1_rep	three_prime_UTR	17642922	17642986	.	+	.	Parent=Os07t0482887-00
Chr07	irgsp1_rep	three_prime_UTR	17643169	17643408	.	+	.	Parent=Os07t0482887-00
Chr07	irgsp1_rep	mRNA	17640572	17643356	.	-	.	ID=Os07t0482900-00;Name=Os07t0482900-00;Locus_id=Os07g0482900;Note=Similar to CytoChrome P450.;Transcript_evidence=FP099672 (DDBJ);ORF_evidence=Q712G4 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);TENOR=Os07t0482900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	17643230	17643356	.	-	.	Parent=Os07t0482900-00
Chr07	irgsp1_rep	CDS	17643161	17643229	.	-	0	Parent=Os07t0482900-00
Chr07	irgsp1_rep	CDS	17642327	17642473	.	-	0	Parent=Os07t0482900-00
Chr07	irgsp1_rep	CDS	17641916	17642167	.	-	0	Parent=Os07t0482900-00
Chr07	irgsp1_rep	CDS	17641387	17641518	.	-	0	Parent=Os07t0482900-00
Chr07	irgsp1_rep	three_prime_UTR	17641243	17641386	.	-	.	Parent=Os07t0482900-00
Chr07	irgsp1_rep	three_prime_UTR	17641039	17641145	.	-	.	Parent=Os07t0482900-00
Chr07	irgsp1_rep	three_prime_UTR	17640775	17640902	.	-	.	Parent=Os07t0482900-00
Chr07	irgsp1_rep	three_prime_UTR	17640572	17640653	.	-	.	Parent=Os07t0482900-00
Chr07	irgsp1_rep	mRNA	17684051	17686264	.	+	.	ID=Os07t0483400-01;Name=Os07t0483400-01;Locus_id=Os07g0483400;Note=Protein of unknown function DUF2365 domain containing protein.;Transcript_evidence=AK108064 (DDBJ%2C Best hit);ORF_evidence=XP_002460699.1 (RefSeq);InterPro=Protein of unknown function DUF2365 (IPR019314);NIAS_FLcDNA=002-138-B06;Expression=AK108064;TENOR=Os07t0483400-01;KEGG=Os07t0483400-01
Chr07	irgsp1_rep	five_prime_UTR	17684051	17684130	.	+	.	Parent=Os07t0483400-01
Chr07	irgsp1_rep	CDS	17684131	17684340	.	+	0	Parent=Os07t0483400-01
Chr07	irgsp1_rep	CDS	17684518	17684584	.	+	0	Parent=Os07t0483400-01
Chr07	irgsp1_rep	CDS	17684954	17685002	.	+	2	Parent=Os07t0483400-01
Chr07	irgsp1_rep	CDS	17685240	17685284	.	+	1	Parent=Os07t0483400-01
Chr07	irgsp1_rep	CDS	17685424	17685490	.	+	1	Parent=Os07t0483400-01
Chr07	irgsp1_rep	three_prime_UTR	17685491	17685528	.	+	.	Parent=Os07t0483400-01
Chr07	irgsp1_rep	three_prime_UTR	17685948	17686264	.	+	.	Parent=Os07t0483400-01
Chr07	irgsp1_rep	mRNA	17687151	17692496	.	-	.	ID=Os07t0483500-01;Name=Os07t0483500-01;Locus_id=Os07g0483500;Note=Similar to Phosphoribosyltransferase (Fragment).;Transcript_evidence=AK122057 (DDBJ%2C Best hit);ORF_evidence=NP_192898.2 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),Phosphoribosyltransferase C-terminal (IPR013583),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=J033114M07;TENOR=Os07t0483500-01
Chr07	irgsp1_rep	five_prime_UTR	17692167	17692496	.	-	.	Parent=Os07t0483500-01
Chr07	irgsp1_rep	five_prime_UTR	17690368	17690412	.	-	.	Parent=Os07t0483500-01
Chr07	irgsp1_rep	CDS	17687332	17690367	.	-	0	Parent=Os07t0483500-01
Chr07	irgsp1_rep	three_prime_UTR	17687151	17687331	.	-	.	Parent=Os07t0483500-01
Chr07	irgsp1_rep	mRNA	17687192	17692430	.	-	.	ID=Os07t0483500-02;Name=Os07t0483500-02;Locus_id=Os07g0483500;Note=Similar to Phosphoribosyltransferase (Fragment).;Transcript_evidence=AK064915 (DDBJ%2C Best hit);ORF_evidence=NP_192898.2 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),Phosphoribosyltransferase C-terminal (IPR013583),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=J013000M15;Expression=AK064915;TENOR=Os07t0483500-02;KEGG=Os07t0483500-02
Chr07	irgsp1_rep	five_prime_UTR	17692167	17692430	.	-	.	Parent=Os07t0483500-02
Chr07	irgsp1_rep	five_prime_UTR	17690368	17690412	.	-	.	Parent=Os07t0483500-02
Chr07	irgsp1_rep	CDS	17687332	17690367	.	-	0	Parent=Os07t0483500-02
Chr07	irgsp1_rep	three_prime_UTR	17687192	17687331	.	-	.	Parent=Os07t0483500-02
Chr07	irgsp1_rep	mRNA	17687157	17692311	.	-	.	ID=Os07t0483500-03;Name=Os07t0483500-03;Locus_id=Os07g0483500;Note=Similar to Phosphoribosyltransferase (Fragment).;Transcript_evidence=AK067097 (DDBJ%2C Best hit);ORF_evidence=NP_192898.2 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),Phosphoribosyltransferase C-terminal (IPR013583),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=J013095C11;TENOR=Os07t0483500-03
Chr07	irgsp1_rep	five_prime_UTR	17692167	17692311	.	-	.	Parent=Os07t0483500-03
Chr07	irgsp1_rep	five_prime_UTR	17690368	17690412	.	-	.	Parent=Os07t0483500-03
Chr07	irgsp1_rep	CDS	17687332	17690367	.	-	0	Parent=Os07t0483500-03
Chr07	irgsp1_rep	three_prime_UTR	17687157	17687331	.	-	.	Parent=Os07t0483500-03
Chr07	irgsp1_rep	mRNA	17740777	17742290	.	+	.	ID=Os07t0484200-01;Name=Os07t0484200-01;Locus_id=Os07g0484200;CGSNL Gene Symbol=ADF9;CGSNL Gene Name=ACTIN DEPOLYMERIZING FACTOR 9;Oryzabase Gene Symbol Synonym(s)=OsADF9;Oryzabase Gene Name Synonym(s)=actin depolymerizing factor 9;Note=Similar to Actin-depolymerizing factor 1 (ADF 1) (ZmABP1) (ZmADF1).;Transcript_evidence=AK072662 (DDBJ%2C Best hit);ORF_evidence=Q8H2P8 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: actin binding (GO:0003779);InterPro=Actin-binding%2C cofilin/tropomyosin type (IPR002108);NIAS_FLcDNA=J023134C12;Oryzabase=12508;Expression=AK072662;TENOR=Os07t0484200-01;KEGG=Os07t0484200-01
Chr07	irgsp1_rep	five_prime_UTR	17740777	17740846	.	+	.	Parent=Os07t0484200-01
Chr07	irgsp1_rep	CDS	17740847	17740849	.	+	0	Parent=Os07t0484200-01
Chr07	irgsp1_rep	CDS	17741015	17741280	.	+	0	Parent=Os07t0484200-01
Chr07	irgsp1_rep	CDS	17741747	17741897	.	+	1	Parent=Os07t0484200-01
Chr07	irgsp1_rep	three_prime_UTR	17741898	17742290	.	+	.	Parent=Os07t0484200-01
Chr07	irgsp1_rep	mRNA	17744219	17755312	.	-	.	ID=Os07t0484300-01;Name=Os07t0484300-01;Locus_id=Os07g0484300;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK072721 (DDBJ%2C Best hit);ORF_evidence=NP_001151203.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Ubiquitin system component Cue (IPR003892),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J023134P18;Expression=AK072721;TENOR=Os07t0484300-01;KEGG=Os07t0484300-01
Chr07	irgsp1_rep	five_prime_UTR	17755111	17755312	.	-	.	Parent=Os07t0484300-01
Chr07	irgsp1_rep	CDS	17754880	17755110	.	-	0	Parent=Os07t0484300-01
Chr07	irgsp1_rep	CDS	17753412	17753489	.	-	0	Parent=Os07t0484300-01
Chr07	irgsp1_rep	CDS	17752481	17752567	.	-	0	Parent=Os07t0484300-01
Chr07	irgsp1_rep	CDS	17752282	17752403	.	-	0	Parent=Os07t0484300-01
Chr07	irgsp1_rep	CDS	17750634	17750730	.	-	1	Parent=Os07t0484300-01
Chr07	irgsp1_rep	CDS	17750308	17750413	.	-	0	Parent=Os07t0484300-01
Chr07	irgsp1_rep	CDS	17749596	17749753	.	-	2	Parent=Os07t0484300-01
Chr07	irgsp1_rep	CDS	17749370	17749507	.	-	0	Parent=Os07t0484300-01
Chr07	irgsp1_rep	CDS	17749217	17749284	.	-	0	Parent=Os07t0484300-01
Chr07	irgsp1_rep	CDS	17748328	17748534	.	-	1	Parent=Os07t0484300-01
Chr07	irgsp1_rep	CDS	17744665	17745025	.	-	1	Parent=Os07t0484300-01
Chr07	irgsp1_rep	CDS	17744518	17744577	.	-	0	Parent=Os07t0484300-01
Chr07	irgsp1_rep	three_prime_UTR	17744219	17744517	.	-	.	Parent=Os07t0484300-01
Chr07	irgsp1_rep	mRNA	17744242	17750389	.	-	.	ID=Os07t0484300-02;Name=Os07t0484300-02;Locus_id=Os07g0484300;Note=Similar to protein binding protein.;Transcript_evidence=AK060926 (DDBJ%2C Best hit);ORF_evidence=NP_001151203.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Ubiquitin system component Cue (IPR003892),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=001-035-H12;Expression=AK060926;TENOR=Os07t0484300-02;KEGG=Os07t0484300-02
Chr07	irgsp1_rep	CDS	17750308	17750389	.	-	0	Parent=Os07t0484300-02
Chr07	irgsp1_rep	CDS	17749596	17749753	.	-	2	Parent=Os07t0484300-02
Chr07	irgsp1_rep	CDS	17749370	17749507	.	-	0	Parent=Os07t0484300-02
Chr07	irgsp1_rep	CDS	17749217	17749284	.	-	0	Parent=Os07t0484300-02
Chr07	irgsp1_rep	CDS	17748328	17748534	.	-	1	Parent=Os07t0484300-02
Chr07	irgsp1_rep	CDS	17744665	17745025	.	-	1	Parent=Os07t0484300-02
Chr07	irgsp1_rep	CDS	17744518	17744577	.	-	0	Parent=Os07t0484300-02
Chr07	irgsp1_rep	three_prime_UTR	17744242	17744517	.	-	.	Parent=Os07t0484300-02
Chr07	irgsp1_rep	mRNA	17745390	17745861	.	+	.	ID=Os07t0484401-00;Name=Os07t0484401-00;Locus_id=Os07g0484401;Note=Hypothetical gene.;Transcript_evidence=CT836152 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os07t0484401-00;KEGG=Os07t0484401-00
Chr07	irgsp1_rep	five_prime_UTR	17745390	17745600	.	+	.	Parent=Os07t0484401-00
Chr07	irgsp1_rep	CDS	17745601	17745813	.	+	0	Parent=Os07t0484401-00
Chr07	irgsp1_rep	three_prime_UTR	17745814	17745861	.	+	.	Parent=Os07t0484401-00
Chr07	irgsp1_rep	mRNA	17767542	17771381	.	+	.	ID=Os07t0484500-01;Name=Os07t0484500-01;Locus_id=Os07g0484500;Note=Protein of unknown function DUF1395 family protein.;Transcript_evidence=AK064741 (DDBJ%2C Best hit);ORF_evidence=B8B624 (UniProt);InterPro=Protein of unknown function DUF1395 (IPR009829);NIAS_FLcDNA=002-120-D09;Expression=AK064741;TENOR=Os07t0484500-01;KEGG=Os07t0484500-01
Chr07	irgsp1_rep	five_prime_UTR	17767542	17767636	.	+	.	Parent=Os07t0484500-01
Chr07	irgsp1_rep	CDS	17767637	17767742	.	+	0	Parent=Os07t0484500-01
Chr07	irgsp1_rep	CDS	17767861	17767985	.	+	2	Parent=Os07t0484500-01
Chr07	irgsp1_rep	CDS	17768447	17768562	.	+	0	Parent=Os07t0484500-01
Chr07	irgsp1_rep	CDS	17768637	17768730	.	+	1	Parent=Os07t0484500-01
Chr07	irgsp1_rep	CDS	17768837	17768898	.	+	0	Parent=Os07t0484500-01
Chr07	irgsp1_rep	CDS	17769874	17769979	.	+	1	Parent=Os07t0484500-01
Chr07	irgsp1_rep	CDS	17770355	17770384	.	+	0	Parent=Os07t0484500-01
Chr07	irgsp1_rep	CDS	17770456	17770569	.	+	0	Parent=Os07t0484500-01
Chr07	irgsp1_rep	CDS	17771112	17771189	.	+	0	Parent=Os07t0484500-01
Chr07	irgsp1_rep	three_prime_UTR	17771190	17771381	.	+	.	Parent=Os07t0484500-01
Chr07	irgsp1_rep	mRNA	17773191	17776674	.	+	.	ID=Os07t0484600-01;Name=Os07t0484600-01;Locus_id=Os07g0484600;Note=Conserved hypothetical protein.;Transcript_evidence=AK105559 (DDBJ%2C Best hit);ORF_evidence=B8B625 (UniProt);NIAS_FLcDNA=001-128-B07;Expression=AK105559;TENOR=Os07t0484600-01;KEGG=Os07t0484600-01
Chr07	irgsp1_rep	five_prime_UTR	17773191	17773237	.	+	.	Parent=Os07t0484600-01
Chr07	irgsp1_rep	five_prime_UTR	17773342	17773458	.	+	.	Parent=Os07t0484600-01
Chr07	irgsp1_rep	five_prime_UTR	17773665	17774334	.	+	.	Parent=Os07t0484600-01
Chr07	irgsp1_rep	five_prime_UTR	17774456	17774526	.	+	.	Parent=Os07t0484600-01
Chr07	irgsp1_rep	CDS	17774527	17774556	.	+	0	Parent=Os07t0484600-01
Chr07	irgsp1_rep	CDS	17775789	17775894	.	+	0	Parent=Os07t0484600-01
Chr07	irgsp1_rep	CDS	17776196	17776285	.	+	2	Parent=Os07t0484600-01
Chr07	irgsp1_rep	CDS	17776404	17776435	.	+	2	Parent=Os07t0484600-01
Chr07	irgsp1_rep	three_prime_UTR	17776436	17776674	.	+	.	Parent=Os07t0484600-01
Chr07	irgsp1_rep	mRNA	17777576	17780338	.	+	.	ID=Os07t0484700-01;Name=Os07t0484700-01;Locus_id=Os07g0484700;Oryzabase Gene Name Synonym(s)=MYB transcription factor;Note=Myb transcription factor domain containing protein.;Transcript_evidence=AK066025 (DDBJ%2C Best hit);ORF_evidence=Q8S3Y1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J013044E03;Oryzabase=22761;Expression=AK066025;TENOR=Os07t0484700-01;KEGG=Os07t0484700-01
Chr07	irgsp1_rep	five_prime_UTR	17777576	17777681	.	+	.	Parent=Os07t0484700-01
Chr07	irgsp1_rep	CDS	17777682	17778042	.	+	0	Parent=Os07t0484700-01
Chr07	irgsp1_rep	CDS	17778133	17778262	.	+	2	Parent=Os07t0484700-01
Chr07	irgsp1_rep	CDS	17778419	17778431	.	+	1	Parent=Os07t0484700-01
Chr07	irgsp1_rep	three_prime_UTR	17778432	17778517	.	+	.	Parent=Os07t0484700-01
Chr07	irgsp1_rep	three_prime_UTR	17778709	17780338	.	+	.	Parent=Os07t0484700-01
Chr07	irgsp1_rep	mRNA	17787901	17801227	.	-	.	ID=Os07t0484800-01;Name=Os07t0484800-01;Locus_id=Os07g0484800;Note=Similar to Adenine phosphoribosyltransferase (EC 2.4.2.7)-like protein.;Transcript_evidence=AK108481 (DDBJ%2C Best hit);ORF_evidence=E9P1J8 (UniProt);GO=Biological Process: adenine salvage (GO:0006168),Biological Process: nucleoside metabolic process (GO:0009116),Cellular Component: cytoplasm (GO:0005737),Molecular Function: adenine phosphoribosyltransferase activity (GO:0003999);InterPro=Phosphoribosyltransferase (IPR000836),Adenine phosphoribosyl transferase (IPR005764);NIAS_FLcDNA=002-143-F04;Expression=AK108481;TENOR=Os07t0484800-01;KEGG=Os07t0484800-01 (EC:2.4.2.7)
Chr07	irgsp1_rep	five_prime_UTR	17801158	17801227	.	-	.	Parent=Os07t0484800-01
Chr07	irgsp1_rep	CDS	17801064	17801157	.	-	0	Parent=Os07t0484800-01
Chr07	irgsp1_rep	CDS	17799832	17799942	.	-	2	Parent=Os07t0484800-01
Chr07	irgsp1_rep	CDS	17795447	17795539	.	-	2	Parent=Os07t0484800-01
Chr07	irgsp1_rep	CDS	17792707	17792856	.	-	2	Parent=Os07t0484800-01
Chr07	irgsp1_rep	CDS	17791912	17791970	.	-	2	Parent=Os07t0484800-01
Chr07	irgsp1_rep	CDS	17788073	17788129	.	-	0	Parent=Os07t0484800-01
Chr07	irgsp1_rep	three_prime_UTR	17787901	17788072	.	-	.	Parent=Os07t0484800-01
Chr07	irgsp1_rep	mRNA	17805412	17805971	.	+	.	ID=Os07t0484900-01;Name=Os07t0484900-01;Locus_id=Os07g0484900;Note=Protein of unknown function DUF1210 family protein.;Transcript_evidence=AK060275 (DDBJ%2C Best hit);ORF_evidence=A6MZD0 (UniProt);NIAS_FLcDNA=001-005-G12;Expression=AK060275;TENOR=Os07t0484900-01;KEGG=Os07t0484900-01
Chr07	irgsp1_rep	five_prime_UTR	17805412	17805431	.	+	.	Parent=Os07t0484900-01
Chr07	irgsp1_rep	CDS	17805432	17805755	.	+	0	Parent=Os07t0484900-01
Chr07	irgsp1_rep	three_prime_UTR	17805756	17805971	.	+	.	Parent=Os07t0484900-01
Chr07	irgsp1_rep	mRNA	17816192	17820602	.	+	.	ID=Os07t0485000-01;Name=Os07t0485000-01;Locus_id=Os07g0485000;Note=Similar to Trehalose-6-phosphate phosphatase.;Transcript_evidence=AK070085 (DDBJ%2C Best hit);ORF_evidence=NP_199959.2 (RefSeq);GO=Biological Process: trehalose biosynthetic process (GO:0005992),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Trehalose-phosphatase (IPR003337),HAD-superfamily hydrolase%2C subfamily IIB (IPR006379),HAD-like domain (IPR023214);NIAS_FLcDNA=J023043K08;Expression=AK070085;TENOR=Os07t0485000-01;KEGG=Os07t0485000-01
Chr07	irgsp1_rep	five_prime_UTR	17816192	17818078	.	+	.	Parent=Os07t0485000-01
Chr07	irgsp1_rep	five_prime_UTR	17818186	17818329	.	+	.	Parent=Os07t0485000-01
Chr07	irgsp1_rep	CDS	17818330	17818533	.	+	0	Parent=Os07t0485000-01
Chr07	irgsp1_rep	CDS	17818627	17818767	.	+	0	Parent=Os07t0485000-01
Chr07	irgsp1_rep	CDS	17818856	17818927	.	+	0	Parent=Os07t0485000-01
Chr07	irgsp1_rep	CDS	17819039	17819167	.	+	0	Parent=Os07t0485000-01
Chr07	irgsp1_rep	CDS	17819284	17819340	.	+	0	Parent=Os07t0485000-01
Chr07	irgsp1_rep	CDS	17819410	17819511	.	+	0	Parent=Os07t0485000-01
Chr07	irgsp1_rep	CDS	17819618	17819695	.	+	0	Parent=Os07t0485000-01
Chr07	irgsp1_rep	CDS	17819765	17819905	.	+	0	Parent=Os07t0485000-01
Chr07	irgsp1_rep	CDS	17820072	17820164	.	+	0	Parent=Os07t0485000-01
Chr07	irgsp1_rep	CDS	17820267	17820329	.	+	0	Parent=Os07t0485000-01
Chr07	irgsp1_rep	three_prime_UTR	17820330	17820602	.	+	.	Parent=Os07t0485000-01
Chr07	irgsp1_rep	mRNA	17820616	17823684	.	-	.	ID=Os07t0485100-01;Name=Os07t0485100-01;Locus_id=Os07g0485100;Note=Similar to Beta-ureidopropionase (EC 3.5.1.6) (Beta-alanine synthase) (N- carbamoyl-beta-alanine amidohydrolase).;Transcript_evidence=AK060443 (DDBJ%2C Best hit);ORF_evidence=NP_001149822.1 (RefSeq);GO=Biological Process: nitrogen compound metabolic process (GO:0006807),Molecular Function: hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds (GO:0016810);InterPro=Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (IPR003010);NIAS_FLcDNA=001-011-E08;Expression=AK060443;TENOR=Os07t0485100-01;KEGG=Os07t0485100-01 (EC:3.5.1.6)
Chr07	irgsp1_rep	five_prime_UTR	17823625	17823684	.	-	.	Parent=Os07t0485100-01
Chr07	irgsp1_rep	CDS	17823496	17823624	.	-	0	Parent=Os07t0485100-01
Chr07	irgsp1_rep	CDS	17822685	17822792	.	-	0	Parent=Os07t0485100-01
Chr07	irgsp1_rep	CDS	17822201	17822389	.	-	0	Parent=Os07t0485100-01
Chr07	irgsp1_rep	CDS	17821694	17821921	.	-	0	Parent=Os07t0485100-01
Chr07	irgsp1_rep	CDS	17821394	17821618	.	-	0	Parent=Os07t0485100-01
Chr07	irgsp1_rep	CDS	17820882	17821244	.	-	0	Parent=Os07t0485100-01
Chr07	irgsp1_rep	three_prime_UTR	17820616	17820881	.	-	.	Parent=Os07t0485100-01
Chr07	irgsp1_rep	mRNA	17826563	17826623	.	-	.	ID=Os07t0485234-00;Name=Os07t0485234-00;Locus_id=Os07g0485234;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0485234-00
Chr07	irgsp1_rep	exon	17826563	17826623	.	-	.	Parent=Os07t0485234-00
Chr07	irgsp1_rep	mRNA	17832460	17833743	.	+	.	ID=Os07t0485366-00;Name=Os07t0485366-00;Locus_id=Os07g0485366;Note=Similar to OSIGBa0136O08-OSIGBa0153H12.1 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01HC3 (UniProt);TENOR=Os07t0485366-00;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	17832460	17833743	.	+	0	Parent=Os07t0485366-00
Chr07	irgsp1_rep	mRNA	17838560	17844966	.	+	.	ID=Os07t0485400-01;Name=Os07t0485400-01;Locus_id=Os07g0485400;Note=Similar to asparaginyl-tRNA synthetase.;Transcript_evidence=AK289232 (DDBJ%2C Best hit);ORF_evidence=F0W9H6 (UniProt);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: asparaginyl-tRNA aminoacylation (GO:0006421),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: asparagine-tRNA ligase activity (GO:0004816),Molecular Function: ATP binding (GO:0005524);InterPro=Aminoacyl-tRNA synthetase%2C class II (D/K/N) (IPR004364),Asparaginyl-tRNA synthetase%2C class IIb (IPR004522),Aminoacyl-tRNA synthetase%2C class II (D/K/N)-like (IPR018150);NIAS_FLcDNA=J100070F14;TENOR=Os07t0485400-01;KEGG=Os07t0485400-01 (EC:6.1.1.22)
Chr07	irgsp1_rep	five_prime_UTR	17838560	17838987	.	+	.	Parent=Os07t0485400-01
Chr07	irgsp1_rep	five_prime_UTR	17839990	17840303	.	+	.	Parent=Os07t0485400-01
Chr07	irgsp1_rep	CDS	17840304	17840447	.	+	0	Parent=Os07t0485400-01
Chr07	irgsp1_rep	CDS	17840961	17841068	.	+	0	Parent=Os07t0485400-01
Chr07	irgsp1_rep	CDS	17841663	17841800	.	+	0	Parent=Os07t0485400-01
Chr07	irgsp1_rep	CDS	17842442	17842519	.	+	0	Parent=Os07t0485400-01
Chr07	irgsp1_rep	CDS	17842720	17842797	.	+	0	Parent=Os07t0485400-01
Chr07	irgsp1_rep	CDS	17842897	17843010	.	+	0	Parent=Os07t0485400-01
Chr07	irgsp1_rep	three_prime_UTR	17843011	17843134	.	+	.	Parent=Os07t0485400-01
Chr07	irgsp1_rep	three_prime_UTR	17843299	17843382	.	+	.	Parent=Os07t0485400-01
Chr07	irgsp1_rep	three_prime_UTR	17843474	17843560	.	+	.	Parent=Os07t0485400-01
Chr07	irgsp1_rep	three_prime_UTR	17843943	17844038	.	+	.	Parent=Os07t0485400-01
Chr07	irgsp1_rep	three_prime_UTR	17844120	17844194	.	+	.	Parent=Os07t0485400-01
Chr07	irgsp1_rep	three_prime_UTR	17844341	17844467	.	+	.	Parent=Os07t0485400-01
Chr07	irgsp1_rep	three_prime_UTR	17844606	17844966	.	+	.	Parent=Os07t0485400-01
Chr07	irgsp1_rep	mRNA	17845825	17848717	.	-	.	ID=Os07t0485500-01;Name=Os07t0485500-01;Locus_id=Os07g0485500;CGSNL Gene Symbol=UMAMIT11;CGSNL Gene Name=USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 11;Oryzabase Gene Symbol Synonym(s)=OsUMAMIT11;Oryzabase Gene Name Synonym(s)=Usually Multiple Acids Move In and out Transporter 11;Note=Protein of unknown function DUF6%2C transmembrane domain containing protein.;Transcript_evidence=AK121068 (DDBJ%2C Best hit);ORF_evidence=Q2R1X7 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=J023061D24;Oryzabase=21379;Expression=AK121068;TENOR=Os07t0485500-01;KEGG=Os07t0485500-01
Chr07	irgsp1_rep	five_prime_UTR	17848614	17848717	.	-	.	Parent=Os07t0485500-01
Chr07	irgsp1_rep	CDS	17848270	17848613	.	-	0	Parent=Os07t0485500-01
Chr07	irgsp1_rep	CDS	17847287	17847812	.	-	1	Parent=Os07t0485500-01
Chr07	irgsp1_rep	CDS	17845980	17846261	.	-	0	Parent=Os07t0485500-01
Chr07	irgsp1_rep	three_prime_UTR	17845825	17845979	.	-	.	Parent=Os07t0485500-01
Chr07	irgsp1_rep	mRNA	17851215	17852160	.	-	.	ID=Os07t0485600-01;Name=Os07t0485600-01;Locus_id=Os07g0485600;Note=Conserved hypothetical protein.;Transcript_evidence=AK059106 (DDBJ%2C Best hit);ORF_evidence=B8B665 (UniProt);NIAS_FLcDNA=001-022-D07;TENOR=Os07t0485600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	17852160	17852160	.	-	.	Parent=Os07t0485600-01
Chr07	irgsp1_rep	CDS	17851928	17852159	.	-	0	Parent=Os07t0485600-01
Chr07	irgsp1_rep	CDS	17851612	17851760	.	-	2	Parent=Os07t0485600-01
Chr07	irgsp1_rep	three_prime_UTR	17851215	17851611	.	-	.	Parent=Os07t0485600-01
Chr07	irgsp1_rep	mRNA	17867052	17867971	.	+	.	ID=Os07t0485950-01;Name=Os07t0485950-01;Locus_id=Os07g0485950;Note=Non-protein coding transcript.;Transcript_evidence=AK242102 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J075143N17;TENOR=Os07t0485950-01
Chr07	irgsp1_rep	exon	17867052	17867971	.	+	.	Parent=Os07t0485950-01
Chr07	irgsp1_rep	mRNA	17870561	17880263	.	+	.	ID=Os07t0486000-01;Name=Os07t0486000-01;Locus_id=Os07g0486000;Oryzabase Gene Symbol Synonym(s)=OsMSH4%2C MSH4;Oryzabase Gene Name Synonym(s)=the rice homolog of MSH4%2C MutS-homolog 4;Note=Similar to MSH4.;Transcript_evidence=AK069343 (DDBJ%2C Best hit);ORF_evidence=NP_193469.2 (RefSeq);GO=Biological Process: mismatch repair (GO:0006298),Molecular Function: ATP binding (GO:0005524),Molecular Function: mismatched DNA binding (GO:0030983);InterPro=DNA mismatch repair protein MutS%2C core (IPR007696);NIAS_FLcDNA=J023011G11;Oryzabase=18595;Expression=AK069343;TENOR=Os07t0486000-01;KEGG=Os07t0486000-01
Chr07	irgsp1_rep	five_prime_UTR	17870561	17870624	.	+	.	Parent=Os07t0486000-01
Chr07	irgsp1_rep	CDS	17870625	17870705	.	+	0	Parent=Os07t0486000-01
Chr07	irgsp1_rep	CDS	17871899	17872102	.	+	0	Parent=Os07t0486000-01
Chr07	irgsp1_rep	CDS	17872190	17872225	.	+	0	Parent=Os07t0486000-01
Chr07	irgsp1_rep	CDS	17872323	17872435	.	+	0	Parent=Os07t0486000-01
Chr07	irgsp1_rep	CDS	17873025	17873070	.	+	1	Parent=Os07t0486000-01
Chr07	irgsp1_rep	CDS	17873320	17873366	.	+	0	Parent=Os07t0486000-01
Chr07	irgsp1_rep	CDS	17873506	17873613	.	+	1	Parent=Os07t0486000-01
Chr07	irgsp1_rep	CDS	17873829	17873943	.	+	1	Parent=Os07t0486000-01
Chr07	irgsp1_rep	three_prime_UTR	17873944	17874516	.	+	.	Parent=Os07t0486000-01
Chr07	irgsp1_rep	three_prime_UTR	17874638	17875452	.	+	.	Parent=Os07t0486000-01
Chr07	irgsp1_rep	three_prime_UTR	17875523	17875662	.	+	.	Parent=Os07t0486000-01
Chr07	irgsp1_rep	three_prime_UTR	17875750	17875800	.	+	.	Parent=Os07t0486000-01
Chr07	irgsp1_rep	three_prime_UTR	17876209	17876272	.	+	.	Parent=Os07t0486000-01
Chr07	irgsp1_rep	three_prime_UTR	17876799	17876942	.	+	.	Parent=Os07t0486000-01
Chr07	irgsp1_rep	three_prime_UTR	17877041	17877108	.	+	.	Parent=Os07t0486000-01
Chr07	irgsp1_rep	three_prime_UTR	17877223	17877281	.	+	.	Parent=Os07t0486000-01
Chr07	irgsp1_rep	three_prime_UTR	17877372	17877528	.	+	.	Parent=Os07t0486000-01
Chr07	irgsp1_rep	three_prime_UTR	17878372	17878613	.	+	.	Parent=Os07t0486000-01
Chr07	irgsp1_rep	three_prime_UTR	17879455	17879569	.	+	.	Parent=Os07t0486000-01
Chr07	irgsp1_rep	three_prime_UTR	17879654	17879776	.	+	.	Parent=Os07t0486000-01
Chr07	irgsp1_rep	three_prime_UTR	17879996	17880263	.	+	.	Parent=Os07t0486000-01
Chr07	irgsp1_rep	mRNA	17870561	17880163	.	+	.	ID=Os07t0486000-02;Name=Os07t0486000-02;Locus_id=Os07g0486000;RAP-DB Gene Symbol Synonym(s)=OsMSH4%2C MSH4;RAP-DB Gene Name Synonym(s)=the rice homolog of MSH4%2C MutS-homolog 4;Oryzabase Gene Symbol Synonym(s)=OsMSH4%2C MSH4;Oryzabase Gene Name Synonym(s)=the rice homolog of MSH4%2C MutS-homolog 4;Note=MutS protein%2C Gamete development in meiosis%2C Regulation of crossover formation;Transcript_evidence=Inferred from literature;ORF_evidence=B8B666 (indica);GO=Biological Process: mismatch repair (GO:0006298),Molecular Function: ATP binding (GO:0005524),Molecular Function: mismatched DNA binding (GO:0030983);InterPro=DNA mismatch repair MutS (IPR011184),DNA mismatch repair protein MutS%2C core (IPR007696),DNA mismatch repair protein MutS%2C clamp (IPR007861),P-loop containing nucleoside triphosphate hydrolase (IPR027417),DNA mismatch repair protein MutS%2C C-terminal (IPR000432);Manual Curation=February 10%2C 2016;Literature_PMID=26712826,25278554;Oryzabase=18595
Chr07	irgsp1_rep	five_prime_UTR	17870561	17870624	.	+	.	Parent=Os07t0486000-02
Chr07	irgsp1_rep	CDS	17870625	17870705	.	+	0	Parent=Os07t0486000-02
Chr07	irgsp1_rep	CDS	17871899	17872102	.	+	0	Parent=Os07t0486000-02
Chr07	irgsp1_rep	CDS	17872190	17872225	.	+	0	Parent=Os07t0486000-02
Chr07	irgsp1_rep	CDS	17872323	17872435	.	+	0	Parent=Os07t0486000-02
Chr07	irgsp1_rep	CDS	17873025	17873070	.	+	1	Parent=Os07t0486000-02
Chr07	irgsp1_rep	CDS	17873320	17873366	.	+	0	Parent=Os07t0486000-02
Chr07	irgsp1_rep	CDS	17873506	17873613	.	+	1	Parent=Os07t0486000-02
Chr07	irgsp1_rep	CDS	17873829	17873904	.	+	1	Parent=Os07t0486000-02
Chr07	irgsp1_rep	CDS	17874444	17874516	.	+	0	Parent=Os07t0486000-02
Chr07	irgsp1_rep	CDS	17874638	17874783	.	+	2	Parent=Os07t0486000-02
Chr07	irgsp1_rep	CDS	17874961	17875046	.	+	0	Parent=Os07t0486000-02
Chr07	irgsp1_rep	CDS	17875313	17875452	.	+	1	Parent=Os07t0486000-02
Chr07	irgsp1_rep	CDS	17875523	17875662	.	+	2	Parent=Os07t0486000-02
Chr07	irgsp1_rep	CDS	17875750	17875800	.	+	0	Parent=Os07t0486000-02
Chr07	irgsp1_rep	CDS	17876209	17876272	.	+	0	Parent=Os07t0486000-02
Chr07	irgsp1_rep	CDS	17876799	17876942	.	+	2	Parent=Os07t0486000-02
Chr07	irgsp1_rep	CDS	17877041	17877108	.	+	2	Parent=Os07t0486000-02
Chr07	irgsp1_rep	CDS	17877223	17877281	.	+	0	Parent=Os07t0486000-02
Chr07	irgsp1_rep	CDS	17877372	17877528	.	+	1	Parent=Os07t0486000-02
Chr07	irgsp1_rep	CDS	17878372	17878424	.	+	0	Parent=Os07t0486000-02
Chr07	irgsp1_rep	CDS	17878515	17878613	.	+	1	Parent=Os07t0486000-02
Chr07	irgsp1_rep	CDS	17879455	17879569	.	+	1	Parent=Os07t0486000-02
Chr07	irgsp1_rep	CDS	17879654	17879776	.	+	0	Parent=Os07t0486000-02
Chr07	irgsp1_rep	CDS	17879996	17880163	.	+	0	Parent=Os07t0486000-02
Chr07	irgsp1_rep	mRNA	17881175	17887798	.	-	.	ID=Os07t0486100-01;Name=Os07t0486100-01;Locus_id=Os07g0486100;Note=RFT1 domain containing protein.;Transcript_evidence=AK069694 (DDBJ%2C Best hit);ORF_evidence=B9FX98 (UniProt);GO=Biological Process: lipid transport (GO:0006869),Cellular Component: integral to membrane (GO:0016021),Molecular Function: lipid transporter activity (GO:0005319);InterPro=RFT1 (IPR007594);NIAS_FLcDNA=J023027L06;TENOR=Os07t0486100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	17887651	17887798	.	-	.	Parent=Os07t0486100-01
Chr07	irgsp1_rep	CDS	17887563	17887650	.	-	0	Parent=Os07t0486100-01
Chr07	irgsp1_rep	CDS	17887392	17887471	.	-	2	Parent=Os07t0486100-01
Chr07	irgsp1_rep	CDS	17886905	17886999	.	-	0	Parent=Os07t0486100-01
Chr07	irgsp1_rep	CDS	17885470	17885621	.	-	1	Parent=Os07t0486100-01
Chr07	irgsp1_rep	CDS	17884752	17884984	.	-	2	Parent=Os07t0486100-01
Chr07	irgsp1_rep	three_prime_UTR	17883644	17884751	.	-	.	Parent=Os07t0486100-01
Chr07	irgsp1_rep	three_prime_UTR	17883481	17883555	.	-	.	Parent=Os07t0486100-01
Chr07	irgsp1_rep	three_prime_UTR	17882916	17882987	.	-	.	Parent=Os07t0486100-01
Chr07	irgsp1_rep	three_prime_UTR	17882589	17882726	.	-	.	Parent=Os07t0486100-01
Chr07	irgsp1_rep	three_prime_UTR	17882100	17882255	.	-	.	Parent=Os07t0486100-01
Chr07	irgsp1_rep	three_prime_UTR	17881964	17882016	.	-	.	Parent=Os07t0486100-01
Chr07	irgsp1_rep	three_prime_UTR	17881711	17881883	.	-	.	Parent=Os07t0486100-01
Chr07	irgsp1_rep	three_prime_UTR	17881175	17881618	.	-	.	Parent=Os07t0486100-01
Chr07	irgsp1_rep	mRNA	17881210	17887542	.	-	.	ID=Os07t0486100-02;Name=Os07t0486100-02;Locus_id=Os07g0486100;Note=Similar to cDNA clone:J023027L06%2C full insert sequence.;Transcript_evidence=AK066795 (DDBJ%2C Best hit);ORF_evidence=B7EGQ7 (UniProt);GO=Biological Process: lipid transport (GO:0006869),Cellular Component: integral to membrane (GO:0016021),Molecular Function: lipid transporter activity (GO:0005319);InterPro=RFT1 (IPR007594);NIAS_FLcDNA=J013085C10;TENOR=Os07t0486100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	17887392	17887542	.	-	.	Parent=Os07t0486100-02
Chr07	irgsp1_rep	five_prime_UTR	17886918	17886999	.	-	.	Parent=Os07t0486100-02
Chr07	irgsp1_rep	CDS	17886905	17886917	.	-	0	Parent=Os07t0486100-02
Chr07	irgsp1_rep	CDS	17884830	17884984	.	-	2	Parent=Os07t0486100-02
Chr07	irgsp1_rep	CDS	17883915	17884033	.	-	0	Parent=Os07t0486100-02
Chr07	irgsp1_rep	CDS	17883644	17883807	.	-	1	Parent=Os07t0486100-02
Chr07	irgsp1_rep	CDS	17883419	17883555	.	-	2	Parent=Os07t0486100-02
Chr07	irgsp1_rep	three_prime_UTR	17882916	17883418	.	-	.	Parent=Os07t0486100-02
Chr07	irgsp1_rep	three_prime_UTR	17882589	17882726	.	-	.	Parent=Os07t0486100-02
Chr07	irgsp1_rep	three_prime_UTR	17882100	17882255	.	-	.	Parent=Os07t0486100-02
Chr07	irgsp1_rep	three_prime_UTR	17881964	17882016	.	-	.	Parent=Os07t0486100-02
Chr07	irgsp1_rep	three_prime_UTR	17881711	17881883	.	-	.	Parent=Os07t0486100-02
Chr07	irgsp1_rep	three_prime_UTR	17881210	17881618	.	-	.	Parent=Os07t0486100-02
Chr07	irgsp1_rep	mRNA	17881273	17887472	.	+	.	ID=Os07t0486200-00;Name=Os07t0486200-00;Locus_id=Os07g0486200;Note=Non-protein coding transcript.;Transcript_evidence=tplb0046c11 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os07t0486200-00
Chr07	irgsp1_rep	exon	17881273	17881620	.	+	.	Parent=Os07t0486200-00
Chr07	irgsp1_rep	exon	17881719	17881895	.	+	.	Parent=Os07t0486200-00
Chr07	irgsp1_rep	exon	17881974	17882251	.	+	.	Parent=Os07t0486200-00
Chr07	irgsp1_rep	exon	17882582	17882733	.	+	.	Parent=Os07t0486200-00
Chr07	irgsp1_rep	exon	17882923	17882984	.	+	.	Parent=Os07t0486200-00
Chr07	irgsp1_rep	exon	17883478	17883552	.	+	.	Parent=Os07t0486200-00
Chr07	irgsp1_rep	exon	17883641	17883745	.	+	.	Parent=Os07t0486200-00
Chr07	irgsp1_rep	exon	17883911	17884052	.	+	.	Parent=Os07t0486200-00
Chr07	irgsp1_rep	exon	17884391	17884800	.	+	.	Parent=Os07t0486200-00
Chr07	irgsp1_rep	exon	17884971	17885623	.	+	.	Parent=Os07t0486200-00
Chr07	irgsp1_rep	exon	17886912	17886986	.	+	.	Parent=Os07t0486200-00
Chr07	irgsp1_rep	exon	17887380	17887472	.	+	.	Parent=Os07t0486200-00
Chr07	irgsp1_rep	mRNA	17892259	17893087	.	-	.	ID=Os07t0486300-00;Name=Os07t0486300-00;Locus_id=Os07g0486300;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);InterPro=Ribonuclease H1%2C N-terminal (IPR011320);TENOR=Os07t0486300-00
Chr07	irgsp1_rep	five_prime_UTR	17893084	17893087	.	-	.	Parent=Os07t0486300-00
Chr07	irgsp1_rep	CDS	17892259	17893083	.	-	0	Parent=Os07t0486300-00
Chr07	irgsp1_rep	mRNA	17903050	17904771	.	+	.	ID=Os07t0486400-01;Name=Os07t0486400-01;Locus_id=Os07g0486400;Note=Conserved hypothetical protein.;Transcript_evidence=AK064409 (DDBJ%2C Best hit);ORF_evidence=B9FX99 (UniProt);NIAS_FLcDNA=002-110-A03;TENOR=Os07t0486400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	17903050	17903115	.	+	.	Parent=Os07t0486400-01
Chr07	irgsp1_rep	CDS	17903116	17903391	.	+	0	Parent=Os07t0486400-01
Chr07	irgsp1_rep	three_prime_UTR	17903392	17903680	.	+	.	Parent=Os07t0486400-01
Chr07	irgsp1_rep	three_prime_UTR	17903923	17904771	.	+	.	Parent=Os07t0486400-01
Chr07	irgsp1_rep	mRNA	17907341	17912113	.	+	.	ID=Os07t0486500-01;Name=Os07t0486500-01;Locus_id=Os07g0486500;Note=RhoGAP domain containing protein.;Transcript_evidence=AK063998 (DDBJ%2C Best hit);ORF_evidence=XP_002864736.1 (RefSeq);GO=Biological Process: signal transduction (GO:0007165),Cellular Component: intracellular (GO:0005622);InterPro=Rho GTPase-activating protein domain (IPR000198),Rho GTPase activation protein (IPR008936);NIAS_FLcDNA=001-124-F03;Expression=AK063998;TENOR=Os07t0486500-01;KEGG=Os07t0486500-01
Chr07	irgsp1_rep	five_prime_UTR	17907341	17907802	.	+	.	Parent=Os07t0486500-01
Chr07	irgsp1_rep	five_prime_UTR	17908345	17908365	.	+	.	Parent=Os07t0486500-01
Chr07	irgsp1_rep	CDS	17908366	17908426	.	+	0	Parent=Os07t0486500-01
Chr07	irgsp1_rep	CDS	17908941	17909185	.	+	2	Parent=Os07t0486500-01
Chr07	irgsp1_rep	CDS	17909706	17909768	.	+	0	Parent=Os07t0486500-01
Chr07	irgsp1_rep	CDS	17909855	17909873	.	+	0	Parent=Os07t0486500-01
Chr07	irgsp1_rep	CDS	17910126	17910224	.	+	2	Parent=Os07t0486500-01
Chr07	irgsp1_rep	CDS	17910304	17910381	.	+	2	Parent=Os07t0486500-01
Chr07	irgsp1_rep	CDS	17910470	17910714	.	+	2	Parent=Os07t0486500-01
Chr07	irgsp1_rep	CDS	17911375	17911531	.	+	0	Parent=Os07t0486500-01
Chr07	irgsp1_rep	CDS	17911740	17911882	.	+	2	Parent=Os07t0486500-01
Chr07	irgsp1_rep	three_prime_UTR	17911883	17912113	.	+	.	Parent=Os07t0486500-01
Chr07	irgsp1_rep	mRNA	17907577	17912298	.	+	.	ID=Os07t0486500-02;Name=Os07t0486500-02;Locus_id=Os07g0486500;Note=RhoGAP domain containing protein.;Transcript_evidence=AK068175 (DDBJ%2C Best hit);ORF_evidence=XP_002864736.1 (RefSeq);GO=Biological Process: signal transduction (GO:0007165),Cellular Component: intracellular (GO:0005622);InterPro=Rho GTPase-activating protein domain (IPR000198),Rho GTPase activation protein (IPR008936);NIAS_FLcDNA=J013130L24;Expression=AK068175;TENOR=Os07t0486500-02;KEGG=Os07t0486500-02
Chr07	irgsp1_rep	five_prime_UTR	17907577	17907802	.	+	.	Parent=Os07t0486500-02
Chr07	irgsp1_rep	five_prime_UTR	17908345	17908365	.	+	.	Parent=Os07t0486500-02
Chr07	irgsp1_rep	CDS	17908366	17908426	.	+	0	Parent=Os07t0486500-02
Chr07	irgsp1_rep	CDS	17908941	17909185	.	+	2	Parent=Os07t0486500-02
Chr07	irgsp1_rep	CDS	17909706	17909768	.	+	0	Parent=Os07t0486500-02
Chr07	irgsp1_rep	CDS	17909855	17909873	.	+	0	Parent=Os07t0486500-02
Chr07	irgsp1_rep	CDS	17910126	17910224	.	+	2	Parent=Os07t0486500-02
Chr07	irgsp1_rep	CDS	17910304	17910381	.	+	2	Parent=Os07t0486500-02
Chr07	irgsp1_rep	CDS	17910470	17910714	.	+	2	Parent=Os07t0486500-02
Chr07	irgsp1_rep	CDS	17911375	17911531	.	+	0	Parent=Os07t0486500-02
Chr07	irgsp1_rep	CDS	17911740	17911882	.	+	2	Parent=Os07t0486500-02
Chr07	irgsp1_rep	three_prime_UTR	17911883	17912298	.	+	.	Parent=Os07t0486500-02
Chr07	irgsp1_rep	mRNA	17945712	17947351	.	+	.	ID=Os07t0486700-00;Name=Os07t0486700-00;Locus_id=Os07g0486700;Note=Similar to cytokinin-O-glucosyltransferase 2.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001148991.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os07t0486700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	17945712	17947141	.	+	0	Parent=Os07t0486700-00
Chr07	irgsp1_rep	CDS	17947303	17947351	.	+	1	Parent=Os07t0486700-00
Chr07	irgsp1_rep	mRNA	17976464	17976534	.	-	.	ID=Os07t0487000-00;Name=Os07t0487000-00;Locus_id=Os07g0487000;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0487000-00
Chr07	irgsp1_rep	exon	17976464	17976534	.	-	.	Parent=Os07t0487000-00
Chr07	irgsp1_rep	mRNA	17981629	17981682	.	+	.	ID=Os07t0487099-00;Name=Os07t0487099-00;Locus_id=Os07g0487099;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0487099-00
Chr07	irgsp1_rep	exon	17981629	17981682	.	+	.	Parent=Os07t0487099-00
Chr07	irgsp1_rep	mRNA	17987904	17991963	.	+	.	ID=Os07t0487198-00;Name=Os07t0487198-00;Locus_id=Os07g0487198;Note=Hypothetical protein.;Transcript_evidence=tplb0040j01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0487198-00
Chr07	irgsp1_rep	five_prime_UTR	17987904	17988244	.	+	.	Parent=Os07t0487198-00
Chr07	irgsp1_rep	five_prime_UTR	17988515	17988653	.	+	.	Parent=Os07t0487198-00
Chr07	irgsp1_rep	five_prime_UTR	17989257	17989506	.	+	.	Parent=Os07t0487198-00
Chr07	irgsp1_rep	five_prime_UTR	17989596	17989802	.	+	.	Parent=Os07t0487198-00
Chr07	irgsp1_rep	five_prime_UTR	17989897	17990193	.	+	.	Parent=Os07t0487198-00
Chr07	irgsp1_rep	five_prime_UTR	17991131	17991246	.	+	.	Parent=Os07t0487198-00
Chr07	irgsp1_rep	CDS	17991247	17991462	.	+	0	Parent=Os07t0487198-00
Chr07	irgsp1_rep	three_prime_UTR	17991463	17991963	.	+	.	Parent=Os07t0487198-00
Chr07	irgsp1_rep	mRNA	17987936	17991989	.	-	.	ID=Os07t0487300-00;Name=Os07t0487300-00;Locus_id=Os07g0487300;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q84ZD7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Gnk2-homologous domain (IPR002902),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os07t0487300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	17991104	17991989	.	-	0	Parent=Os07t0487300-00
Chr07	irgsp1_rep	CDS	17989898	17990076	.	-	2	Parent=Os07t0487300-00
Chr07	irgsp1_rep	CDS	17989591	17989801	.	-	0	Parent=Os07t0487300-00
Chr07	irgsp1_rep	CDS	17989320	17989494	.	-	2	Parent=Os07t0487300-00
Chr07	irgsp1_rep	CDS	17988503	17988653	.	-	1	Parent=Os07t0487300-00
Chr07	irgsp1_rep	CDS	17987936	17988235	.	-	0	Parent=Os07t0487300-00
Chr07	irgsp1_rep	mRNA	18035585	18035655	.	-	.	ID=Os07t0487849-00;Name=Os07t0487849-00;Locus_id=Os07g0487849;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0487849-00
Chr07	irgsp1_rep	exon	18035585	18035655	.	-	.	Parent=Os07t0487849-00
Chr07	irgsp1_rep	mRNA	18040750	18040803	.	+	.	ID=Os07t0488032-00;Name=Os07t0488032-00;Locus_id=Os07g0488032;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0488032-00
Chr07	irgsp1_rep	exon	18040750	18040803	.	+	.	Parent=Os07t0488032-00
Chr07	irgsp1_rep	mRNA	18047025	18051084	.	+	.	ID=Os07t0488215-00;Name=Os07t0488215-00;Locus_id=Os07g0488215;Note=Hypothetical protein.;Transcript_evidence=tplb0040j01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0488215-00
Chr07	irgsp1_rep	five_prime_UTR	18047025	18047365	.	+	.	Parent=Os07t0488215-00
Chr07	irgsp1_rep	five_prime_UTR	18047636	18047774	.	+	.	Parent=Os07t0488215-00
Chr07	irgsp1_rep	five_prime_UTR	18048378	18048627	.	+	.	Parent=Os07t0488215-00
Chr07	irgsp1_rep	five_prime_UTR	18048717	18048923	.	+	.	Parent=Os07t0488215-00
Chr07	irgsp1_rep	five_prime_UTR	18049018	18049314	.	+	.	Parent=Os07t0488215-00
Chr07	irgsp1_rep	five_prime_UTR	18050252	18050367	.	+	.	Parent=Os07t0488215-00
Chr07	irgsp1_rep	CDS	18050368	18050583	.	+	0	Parent=Os07t0488215-00
Chr07	irgsp1_rep	three_prime_UTR	18050584	18051084	.	+	.	Parent=Os07t0488215-00
Chr07	irgsp1_rep	mRNA	18047057	18051110	.	-	.	ID=Os07t0488400-01;Name=Os07t0488400-01;Locus_id=Os07g0488400;RAP-DB Gene Symbol Synonym(s)=LIL1;RAP-DB Gene Name Synonym(s)=Light-Induced Lesion Mimic Mutant 1;CGSNL Gene Symbol=LIL1;CGSNL Gene Name=LIGHT-INDUCED LESION MIMIC MUTANT 1;Oryzabase Gene Name Synonym(s)=light-induced lesion mimic mutant 1;Note=Putative cysteine-rich receptor-like kinase (CRK)%2C Causal gene of light-induced lesion mimic mutant;Transcript_evidence=Inferred from literature;ORF_evidence=Q84ZD7;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),Gnk2-homologous domain (IPR002902),Protein kinase domain (IPR000719),Serine-threonine/tyrosine-protein kinase%2C catalytic domain (IPR001245),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);Manual Curation=January 15%2C 2018;Literature_PMID=29312386;Oryzabase=22262;TENOR=Os07t0488400-00
Chr07	irgsp1_rep	CDS	18050225	18051110	.	-	0	Parent=Os07t0488400-01
Chr07	irgsp1_rep	CDS	18049314	18049412	.	-	2	Parent=Os07t0488400-01
Chr07	irgsp1_rep	CDS	18049019	18049197	.	-	2	Parent=Os07t0488400-01
Chr07	irgsp1_rep	CDS	18048712	18048922	.	-	0	Parent=Os07t0488400-01
Chr07	irgsp1_rep	CDS	18048378	18048615	.	-	2	Parent=Os07t0488400-01
Chr07	irgsp1_rep	CDS	18047624	18047774	.	-	1	Parent=Os07t0488400-01
Chr07	irgsp1_rep	CDS	18047057	18047356	.	-	0	Parent=Os07t0488400-01
Chr07	irgsp1_rep	mRNA	18102558	18103713	.	-	.	ID=Os07t0489000-01;Name=Os07t0489000-01;Locus_id=Os07g0489000;Oryzabase Gene Symbol Synonym(s)=OsLTPG20%2C OsLTPg20;Oryzabase Gene Name Synonym(s)=GPI-anchored non-specific lipid transfer protein 20%2C type G nsLTP 20%2C type G non-specific lipid transfer protein 20;Note=Plant lipid transfer protein/Par allergen family protein.;Transcript_evidence=AK242242 (DDBJ%2C Best hit);ORF_evidence=A2YLE0 (UniProt);GO=Biological Process: lipid transport (GO:0006869),Molecular Function: lipid binding (GO:0008289);InterPro=Plant lipid transfer protein/Par allergen (IPR000528),Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=J075179O09;Oryzabase=13505;TENOR=Os07t0489000-01;KEGG=Os07t0489000-01
Chr07	irgsp1_rep	five_prime_UTR	18103613	18103713	.	-	.	Parent=Os07t0489000-01
Chr07	irgsp1_rep	CDS	18103219	18103612	.	-	0	Parent=Os07t0489000-01
Chr07	irgsp1_rep	CDS	18102743	18102861	.	-	2	Parent=Os07t0489000-01
Chr07	irgsp1_rep	three_prime_UTR	18102558	18102742	.	-	.	Parent=Os07t0489000-01
Chr07	irgsp1_rep	mRNA	18106225	18111251	.	+	.	ID=Os07t0489100-00;Name=Os07t0489100-00;Locus_id=Os07g0489100;Note=Similar to male sterility protein 2.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001151388.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=Male sterility%2C NAD-binding (IPR013120),NAD(P)-binding domain (IPR016040);TENOR=Os07t0489100-00
Chr07	irgsp1_rep	CDS	18106225	18106303	.	+	0	Parent=Os07t0489100-00
Chr07	irgsp1_rep	CDS	18106580	18106683	.	+	2	Parent=Os07t0489100-00
Chr07	irgsp1_rep	CDS	18107708	18107907	.	+	0	Parent=Os07t0489100-00
Chr07	irgsp1_rep	CDS	18108001	18108101	.	+	1	Parent=Os07t0489100-00
Chr07	irgsp1_rep	CDS	18108274	18108472	.	+	2	Parent=Os07t0489100-00
Chr07	irgsp1_rep	CDS	18108584	18108745	.	+	1	Parent=Os07t0489100-00
Chr07	irgsp1_rep	CDS	18108866	18108947	.	+	1	Parent=Os07t0489100-00
Chr07	irgsp1_rep	CDS	18111123	18111251	.	+	0	Parent=Os07t0489100-00
Chr07	irgsp1_rep	mRNA	18113479	18115173	.	-	.	ID=Os07t0489200-01;Name=Os07t0489200-01;Locus_id=Os07g0489200;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK241979 (DDBJ%2C Best hit);ORF_evidence=NP_001148991.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J075097E07;TENOR=Os07t0489200-01;KEGG=Os07t0489200-01
Chr07	irgsp1_rep	five_prime_UTR	18115161	18115173	.	-	.	Parent=Os07t0489200-01
Chr07	irgsp1_rep	CDS	18113712	18115160	.	-	0	Parent=Os07t0489200-01
Chr07	irgsp1_rep	three_prime_UTR	18113479	18113711	.	-	.	Parent=Os07t0489200-01
Chr07	irgsp1_rep	mRNA	18124677	18126388	.	-	.	ID=Os07t0489300-01;Name=Os07t0489300-01;Locus_id=Os07g0489300;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK060228 (DDBJ%2C Best hit);ORF_evidence=NP_001148991.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=001-002-G12;Expression=AK060228;TENOR=Os07t0489300-01;KEGG=Os07t0489300-01
Chr07	irgsp1_rep	five_prime_UTR	18126324	18126388	.	-	.	Parent=Os07t0489300-01
Chr07	irgsp1_rep	CDS	18126240	18126323	.	-	0	Parent=Os07t0489300-01
Chr07	irgsp1_rep	CDS	18124827	18126080	.	-	0	Parent=Os07t0489300-01
Chr07	irgsp1_rep	three_prime_UTR	18124677	18124826	.	-	.	Parent=Os07t0489300-01
Chr07	irgsp1_rep	mRNA	18134538	18135622	.	-	.	ID=Os07t0489500-00;Name=Os07t0489500-00;Locus_id=Os07g0489500;Note=Ubiquitin domain containing protein.;Transcript_evidence=EU955270 (DDBJ);ORF_evidence=Q7XYD4 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735),Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin (IPR000626),Ribosomal protein L40e (IPR001975),Ubiquitin conserved site (IPR019954),Ubiquitin supergroup (IPR019955),Ubiquitin subgroup (IPR019956);TENOR=Os07t0489500-00;KEGG=Os07t0489500-00
Chr07	irgsp1_rep	CDS	18135187	18135622	.	-	0	Parent=Os07t0489500-00
Chr07	irgsp1_rep	CDS	18134782	18134989	.	-	2	Parent=Os07t0489500-00
Chr07	irgsp1_rep	CDS	18134538	18134658	.	-	1	Parent=Os07t0489500-00
Chr07	irgsp1_rep	mRNA	18134588	18135304	.	+	.	ID=Os07t0489650-00;Name=Os07t0489650-00;Locus_id=Os07g0489650;Note=Hypothetical gene.;Transcript_evidence=BT018987 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0489650-00;KEGG=Os07t0489650-00
Chr07	irgsp1_rep	five_prime_UTR	18134588	18134588	.	+	.	Parent=Os07t0489650-00
Chr07	irgsp1_rep	CDS	18134589	18134651	.	+	0	Parent=Os07t0489650-00
Chr07	irgsp1_rep	CDS	18134775	18134985	.	+	0	Parent=Os07t0489650-00
Chr07	irgsp1_rep	CDS	18135183	18135304	.	+	2	Parent=Os07t0489650-00
Chr07	irgsp1_rep	mRNA	18149111	18150695	.	+	.	ID=Os07t0489800-01;Name=Os07t0489800-01;Locus_id=Os07g0489800;Oryzabase Gene Name Synonym(s)=Ferredoxin;Note=Beta-grasp fold%2C ferredoxin-type domain containing protein.;Transcript_evidence=AK068191 (DDBJ%2C Best hit);ORF_evidence=B4FVP6 (UniProt);GO=Molecular Function: electron carrier activity (GO:0009055),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=Ferredoxin (IPR001041),Beta-grasp fold%2C ferredoxin-type (IPR012675);NIAS_FLcDNA=J013135M05;Oryzabase=12443;Expression=AK068191;TENOR=Os07t0489800-01;KEGG=Os07t0489800-01
Chr07	irgsp1_rep	five_prime_UTR	18149111	18149171	.	+	.	Parent=Os07t0489800-01
Chr07	irgsp1_rep	CDS	18149172	18149459	.	+	0	Parent=Os07t0489800-01
Chr07	irgsp1_rep	CDS	18149573	18149683	.	+	0	Parent=Os07t0489800-01
Chr07	irgsp1_rep	CDS	18149786	18149842	.	+	0	Parent=Os07t0489800-01
Chr07	irgsp1_rep	CDS	18149928	18149990	.	+	0	Parent=Os07t0489800-01
Chr07	irgsp1_rep	CDS	18150115	18150177	.	+	0	Parent=Os07t0489800-01
Chr07	irgsp1_rep	CDS	18150414	18150464	.	+	0	Parent=Os07t0489800-01
Chr07	irgsp1_rep	three_prime_UTR	18150465	18150695	.	+	.	Parent=Os07t0489800-01
Chr07	irgsp1_rep	mRNA	18157770	18162394	.	+	.	ID=Os07t0489950-01;Name=Os07t0489950-01;Locus_id=Os07g0489950;Note=Similar to cytokinin-O-glucosyltransferase 2.;Transcript_evidence=AK289089 (DDBJ%2C Best hit);ORF_evidence=NP_001148991.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J090095N08;TENOR=Os07t0489950-01;KEGG=Os07t0489950-01
Chr07	irgsp1_rep	five_prime_UTR	18157770	18157770	.	+	.	Parent=Os07t0489950-01
Chr07	irgsp1_rep	CDS	18157771	18158775	.	+	0	Parent=Os07t0489950-01
Chr07	irgsp1_rep	three_prime_UTR	18158776	18162394	.	+	.	Parent=Os07t0489950-01
Chr07	irgsp1_rep	mRNA	18203445	18205154	.	+	.	ID=Os07t0490100-01;Name=Os07t0490100-01;Locus_id=Os07g0490100;Oryzabase Gene Symbol Synonym(s)=UGT709A4;Oryzabase Gene Name Synonym(s)=UDP-dependent glucosyltransferase 709A4;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK072018 (DDBJ%2C Best hit);ORF_evidence=NP_001148991.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J013106P09;Oryzabase=18349;Expression=AK072018;TENOR=Os07t0490100-01;KEGG=Os07t0490100-01
Chr07	irgsp1_rep	five_prime_UTR	18203445	18203548	.	+	.	Parent=Os07t0490100-01
Chr07	irgsp1_rep	CDS	18203549	18204991	.	+	0	Parent=Os07t0490100-01
Chr07	irgsp1_rep	three_prime_UTR	18204992	18205154	.	+	.	Parent=Os07t0490100-01
Chr07	irgsp1_rep	mRNA	18203475	18205157	.	+	.	ID=Os07t0490100-02;Name=Os07t0490100-02;Locus_id=Os07g0490100;Oryzabase Gene Symbol Synonym(s)=UGT709A4;Oryzabase Gene Name Synonym(s)=UDP-dependent glucosyltransferase 709A4;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK106006 (DDBJ%2C Best hit);ORF_evidence=NP_001148991.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=001-206-A06;Oryzabase=18349;Expression=AK106006;TENOR=Os07t0490100-02;KEGG=Os07t0490100-02
Chr07	irgsp1_rep	five_prime_UTR	18203475	18203548	.	+	.	Parent=Os07t0490100-02
Chr07	irgsp1_rep	CDS	18203549	18204991	.	+	0	Parent=Os07t0490100-02
Chr07	irgsp1_rep	three_prime_UTR	18204992	18205157	.	+	.	Parent=Os07t0490100-02
Chr07	irgsp1_rep	mRNA	18205280	18218108	.	-	.	ID=Os07t0490200-01;Name=Os07t0490200-01;Locus_id=Os07g0490200;RAP-DB Gene Symbol Synonym(s)=OsCBT;RAP-DB Gene Name Synonym(s)=CaM-binding transcription factor;Oryzabase Gene Symbol Synonym(s)=OsCBT%2C CBT%2C DLN185%2C OsDLN185;Oryzabase Gene Name Synonym(s)=CaM-binding transcription factor%2C DLN repressor 185%2C DLN motif protein 185;Note=Calmodulin (CaM)-binding transcription factor%2C Negative regulation of defense response;Transcript_evidence=AK070976;ORF_evidence=Q7XHR2;GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Immunoglobulin-like fold (IPR013783),Immunoglobulin E-set (IPR014756),Ankyrin repeat-containing domain superfamily (IPR036770),P-loop containing nucleoside triphosphate hydrolase (IPR027417),CG-1 DNA-binding domain (IPR005559),Ankyrin repeat-containing domain (IPR020683),Ankyrin repeat (IPR002110),IQ motif%2C EF-hand binding site (IPR000048);NIAS_FLcDNA=J023073E17;Manual Curation=October 27%2C 2020;Literature_PMID=19466605,16192280;Oryzabase=19598;Expression=AK070976;TENOR=Os07t0490200-01;KEGG=Os07t0490200-01;Subcellular location=nucleus (GO:0005634)
Chr07	irgsp1_rep	five_prime_UTR	18218060	18218108	.	-	.	Parent=Os07t0490200-01
Chr07	irgsp1_rep	CDS	18217993	18218059	.	-	0	Parent=Os07t0490200-01
Chr07	irgsp1_rep	CDS	18217231	18217356	.	-	2	Parent=Os07t0490200-01
Chr07	irgsp1_rep	CDS	18212055	18212170	.	-	2	Parent=Os07t0490200-01
Chr07	irgsp1_rep	CDS	18211880	18211968	.	-	0	Parent=Os07t0490200-01
Chr07	irgsp1_rep	CDS	18211077	18211122	.	-	1	Parent=Os07t0490200-01
Chr07	irgsp1_rep	CDS	18210197	18210365	.	-	0	Parent=Os07t0490200-01
Chr07	irgsp1_rep	CDS	18209896	18209991	.	-	2	Parent=Os07t0490200-01
Chr07	irgsp1_rep	CDS	18209738	18209820	.	-	2	Parent=Os07t0490200-01
Chr07	irgsp1_rep	CDS	18208813	18209193	.	-	0	Parent=Os07t0490200-01
Chr07	irgsp1_rep	CDS	18207465	18208156	.	-	0	Parent=Os07t0490200-01
Chr07	irgsp1_rep	CDS	18206506	18207061	.	-	1	Parent=Os07t0490200-01
Chr07	irgsp1_rep	CDS	18205947	18206264	.	-	0	Parent=Os07t0490200-01
Chr07	irgsp1_rep	CDS	18205620	18205664	.	-	0	Parent=Os07t0490200-01
Chr07	irgsp1_rep	three_prime_UTR	18205280	18205619	.	-	.	Parent=Os07t0490200-01
Chr07	irgsp1_rep	mRNA	18205312	18208091	.	-	.	ID=Os07t0490200-02;Name=Os07t0490200-02;Locus_id=Os07g0490200;Oryzabase Gene Symbol Synonym(s)=OsCBT%2C CBT%2C DLN185%2C OsDLN185;Oryzabase Gene Name Synonym(s)=CaM-binding transcription factor%2C DLN repressor 185%2C DLN motif protein 185;Note=Similar to CaM-binding transcription factor.;Transcript_evidence=AK061972 (DDBJ%2C Best hit);ORF_evidence=Q2WEL1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048),Ankyrin repeat (IPR002110),Immunoglobulin E-set (IPR014756),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=001-042-H08;Oryzabase=19598;Expression=AK061972;TENOR=Os07t0490200-02;KEGG=Os07t0490200-02
Chr07	irgsp1_rep	five_prime_UTR	18208091	18208091	.	-	.	Parent=Os07t0490200-02
Chr07	irgsp1_rep	CDS	18207465	18208090	.	-	0	Parent=Os07t0490200-02
Chr07	irgsp1_rep	CDS	18206506	18207061	.	-	1	Parent=Os07t0490200-02
Chr07	irgsp1_rep	CDS	18205947	18206264	.	-	0	Parent=Os07t0490200-02
Chr07	irgsp1_rep	CDS	18205620	18205664	.	-	0	Parent=Os07t0490200-02
Chr07	irgsp1_rep	three_prime_UTR	18205312	18205619	.	-	.	Parent=Os07t0490200-02
Chr07	irgsp1_rep	mRNA	18222621	18228387	.	-	.	ID=Os07t0490300-01;Name=Os07t0490300-01;Locus_id=Os07g0490300;Note=Similar to Preproacrosin.;Transcript_evidence=AK068288 (DDBJ%2C Best hit);ORF_evidence=NP_199935.2 (RefSeq);InterPro=Ubiquinol-cytoChrome c chaperone%2C CBP3 (IPR007129),Ubiquinol-cytoChrome c chaperone/UPF0174 (IPR021150);NIAS_FLcDNA=J013149P03;Expression=AK068288;TENOR=Os07t0490300-01;KEGG=Os07t0490300-01
Chr07	irgsp1_rep	five_prime_UTR	18228271	18228387	.	-	.	Parent=Os07t0490300-01
Chr07	irgsp1_rep	CDS	18228061	18228270	.	-	0	Parent=Os07t0490300-01
Chr07	irgsp1_rep	CDS	18226988	18227201	.	-	0	Parent=Os07t0490300-01
Chr07	irgsp1_rep	CDS	18225771	18225937	.	-	2	Parent=Os07t0490300-01
Chr07	irgsp1_rep	CDS	18224762	18224886	.	-	0	Parent=Os07t0490300-01
Chr07	irgsp1_rep	CDS	18223545	18223608	.	-	1	Parent=Os07t0490300-01
Chr07	irgsp1_rep	CDS	18223406	18223451	.	-	0	Parent=Os07t0490300-01
Chr07	irgsp1_rep	CDS	18223228	18223310	.	-	2	Parent=Os07t0490300-01
Chr07	irgsp1_rep	three_prime_UTR	18222621	18223227	.	-	.	Parent=Os07t0490300-01
Chr07	irgsp1_rep	mRNA	18228610	18232364	.	+	.	ID=Os07t0490400-01;Name=Os07t0490400-01;Locus_id=Os07g0490400;Oryzabase Gene Symbol Synonym(s)=OsFKBP20-2%2C FKBP20-2;Oryzabase Gene Name Synonym(s)=FK506 binding protein 20-2;Note=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type domain containing protein.;Transcript_evidence=AK067941 (DDBJ%2C Best hit);ORF_evidence=NP_001151655.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457);InterPro=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type%2C domain (IPR001179),Peptidyl-prolyl cis-trans isomerase%2C FKBP-type (IPR023566);NIAS_FLcDNA=J013121F22;Oryzabase=10038;Expression=AK067941;TENOR=Os07t0490400-01;KEGG=Os07t0490400-01
Chr07	irgsp1_rep	five_prime_UTR	18228610	18228682	.	+	.	Parent=Os07t0490400-01
Chr07	irgsp1_rep	CDS	18228683	18228737	.	+	0	Parent=Os07t0490400-01
Chr07	irgsp1_rep	CDS	18228838	18228913	.	+	2	Parent=Os07t0490400-01
Chr07	irgsp1_rep	CDS	18229045	18229274	.	+	1	Parent=Os07t0490400-01
Chr07	irgsp1_rep	CDS	18229647	18229756	.	+	2	Parent=Os07t0490400-01
Chr07	irgsp1_rep	CDS	18230132	18230237	.	+	0	Parent=Os07t0490400-01
Chr07	irgsp1_rep	CDS	18230415	18230494	.	+	2	Parent=Os07t0490400-01
Chr07	irgsp1_rep	CDS	18231916	18232035	.	+	0	Parent=Os07t0490400-01
Chr07	irgsp1_rep	three_prime_UTR	18232036	18232364	.	+	.	Parent=Os07t0490400-01
Chr07	irgsp1_rep	mRNA	18239538	18240067	.	-	.	ID=Os07t0490450-00;Name=Os07t0490450-00;Locus_id=Os07g0490450;Note=Hypothetical protein.;Transcript_evidence=AM939962 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0490450-00
Chr07	irgsp1_rep	five_prime_UTR	18239921	18240067	.	-	.	Parent=Os07t0490450-00
Chr07	irgsp1_rep	CDS	18239761	18239920	.	-	0	Parent=Os07t0490450-00
Chr07	irgsp1_rep	CDS	18239538	18239620	.	-	2	Parent=Os07t0490450-00
Chr07	irgsp1_rep	mRNA	18239866	18241394	.	+	.	ID=Os07t0490500-01;Name=Os07t0490500-01;Locus_id=Os07g0490500;Note=Xanthine/uracil/vitamin C permease family protein.;Transcript_evidence=AK059640 (DDBJ%2C Best hit),AK061151 (DDBJ%2C Best hit);ORF_evidence=XP_002866918.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Xanthine/uracil/vitamin C permease (IPR006043);NIAS_FLcDNA=001-031-B07,006-208-E11;Expression=AK059640;TENOR=Os07t0490500-01;KEGG=Os07t0490500-01
Chr07	irgsp1_rep	five_prime_UTR	18239866	18239867	.	+	.	Parent=Os07t0490500-01
Chr07	irgsp1_rep	CDS	18239868	18240068	.	+	0	Parent=Os07t0490500-01
Chr07	irgsp1_rep	CDS	18240189	18240423	.	+	0	Parent=Os07t0490500-01
Chr07	irgsp1_rep	CDS	18240503	18240783	.	+	2	Parent=Os07t0490500-01
Chr07	irgsp1_rep	CDS	18240915	18241136	.	+	0	Parent=Os07t0490500-01
Chr07	irgsp1_rep	three_prime_UTR	18241137	18241394	.	+	.	Parent=Os07t0490500-01
Chr07	irgsp1_rep	mRNA	18241609	18246904	.	-	.	ID=Os07t0490600-02;Name=Os07t0490600-02;Locus_id=Os07g0490600;Note=Similar to Type II membrane protein.;Transcript_evidence=AK101803 (DDBJ%2C Best hit),AK061330 (DDBJ%2C Best hit);ORF_evidence=A3BJW9 (UniProt);NIAS_FLcDNA=J033066J12,006-303-A05;Expression=AK101803;TENOR=Os07t0490600-02;KEGG=Os07t0490600-02
Chr07	irgsp1_rep	five_prime_UTR	18246772	18246904	.	-	.	Parent=Os07t0490600-02
Chr07	irgsp1_rep	CDS	18246757	18246771	.	-	0	Parent=Os07t0490600-02
Chr07	irgsp1_rep	CDS	18246556	18246607	.	-	0	Parent=Os07t0490600-02
Chr07	irgsp1_rep	CDS	18245193	18245311	.	-	2	Parent=Os07t0490600-02
Chr07	irgsp1_rep	CDS	18243711	18243951	.	-	0	Parent=Os07t0490600-02
Chr07	irgsp1_rep	CDS	18243558	18243625	.	-	2	Parent=Os07t0490600-02
Chr07	irgsp1_rep	CDS	18243396	18243468	.	-	0	Parent=Os07t0490600-02
Chr07	irgsp1_rep	CDS	18242700	18242812	.	-	2	Parent=Os07t0490600-02
Chr07	irgsp1_rep	CDS	18241800	18241952	.	-	0	Parent=Os07t0490600-02
Chr07	irgsp1_rep	three_prime_UTR	18241609	18241799	.	-	.	Parent=Os07t0490600-02
Chr07	irgsp1_rep	mRNA	18250777	18252633	.	+	.	ID=Os07t0490700-01;Name=Os07t0490700-01;Locus_id=Os07g0490700;Note=Snf7 family protein.;Transcript_evidence=AK108737 (DDBJ%2C Best hit);ORF_evidence=NP_001152667.1 (RefSeq);GO=Biological Process: protein transport (GO:0015031);InterPro=Snf7 (IPR005024);NIAS_FLcDNA=002-150-D10;Expression=AK108737;TENOR=Os07t0490700-01;KEGG=Os07t0490700-01
Chr07	irgsp1_rep	five_prime_UTR	18250777	18251032	.	+	.	Parent=Os07t0490700-01
Chr07	irgsp1_rep	CDS	18251033	18251095	.	+	0	Parent=Os07t0490700-01
Chr07	irgsp1_rep	CDS	18252136	18252366	.	+	0	Parent=Os07t0490700-01
Chr07	irgsp1_rep	three_prime_UTR	18252367	18252633	.	+	.	Parent=Os07t0490700-01
Chr07	irgsp1_rep	mRNA	18253700	18256000	.	-	.	ID=Os07t0490800-01;Name=Os07t0490800-01;Locus_id=Os07g0490800;Note=Similar to COP9 signalosome complex subunit 7 (CSN complex subunit 7) (FUSCA protein 5) (FUSCA5).;Transcript_evidence=AK058214 (DDBJ%2C Best hit);ORF_evidence=B4F8L1 (UniProt);NIAS_FLcDNA=001-010-D11;Expression=AK058214;TENOR=Os07t0490800-01;KEGG=Os07t0490800-01
Chr07	irgsp1_rep	CDS	18255956	18256000	.	-	0	Parent=Os07t0490800-01
Chr07	irgsp1_rep	CDS	18255703	18255747	.	-	0	Parent=Os07t0490800-01
Chr07	irgsp1_rep	CDS	18255543	18255613	.	-	0	Parent=Os07t0490800-01
Chr07	irgsp1_rep	CDS	18254782	18254914	.	-	1	Parent=Os07t0490800-01
Chr07	irgsp1_rep	CDS	18254416	18254487	.	-	0	Parent=Os07t0490800-01
Chr07	irgsp1_rep	three_prime_UTR	18254382	18254415	.	-	.	Parent=Os07t0490800-01
Chr07	irgsp1_rep	three_prime_UTR	18253700	18254009	.	-	.	Parent=Os07t0490800-01
Chr07	irgsp1_rep	mRNA	18311132	18311928	.	+	.	ID=Os07t0491500-01;Name=Os07t0491500-01;Locus_id=Os07g0491500;Note=Hypothetical conserved gene.;Transcript_evidence=AK241101 (DDBJ%2C Best hit);ORF_evidence=NP_001175208.1 (RefSeq);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J065078I06;TENOR=Os07t0491500-01;KEGG=Os07t0491500-01
Chr07	irgsp1_rep	five_prime_UTR	18311132	18311133	.	+	.	Parent=Os07t0491500-01
Chr07	irgsp1_rep	CDS	18311134	18311655	.	+	0	Parent=Os07t0491500-01
Chr07	irgsp1_rep	three_prime_UTR	18311656	18311928	.	+	.	Parent=Os07t0491500-01
Chr07	irgsp1_rep	mRNA	18321784	18324648	.	+	.	ID=Os07t0491600-01;Name=Os07t0491600-01;Locus_id=Os07g0491600;Note=Conserved hypothetical protein.;Transcript_evidence=AK059584 (DDBJ%2C Best hit);ORF_evidence=B9G4T6 (UniProt);NIAS_FLcDNA=001-030-B08;TENOR=Os07t0491600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	18321784	18321839	.	+	0	Parent=Os07t0491600-01
Chr07	irgsp1_rep	CDS	18322196	18322262	.	+	1	Parent=Os07t0491600-01
Chr07	irgsp1_rep	CDS	18322839	18322935	.	+	0	Parent=Os07t0491600-01
Chr07	irgsp1_rep	CDS	18323238	18323299	.	+	2	Parent=Os07t0491600-01
Chr07	irgsp1_rep	CDS	18323387	18323429	.	+	0	Parent=Os07t0491600-01
Chr07	irgsp1_rep	CDS	18323581	18323848	.	+	2	Parent=Os07t0491600-01
Chr07	irgsp1_rep	CDS	18324046	18324292	.	+	1	Parent=Os07t0491600-01
Chr07	irgsp1_rep	three_prime_UTR	18324293	18324648	.	+	.	Parent=Os07t0491600-01
Chr07	irgsp1_rep	mRNA	18328958	18330796	.	+	.	ID=Os07t0491800-01;Name=Os07t0491800-01;Locus_id=Os07g0491800;Note=Similar to taxane 13-alpha-hydroxylase.;Transcript_evidence=AK106952 (DDBJ%2C Best hit);ORF_evidence=NP_001148166.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: monooxygenase activity (GO:0004497),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C B-class (IPR002397),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=002-119-E05;TENOR=Os07t0491800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	18328958	18328959	.	+	.	Parent=Os07t0491800-01
Chr07	irgsp1_rep	CDS	18328960	18330510	.	+	0	Parent=Os07t0491800-01
Chr07	irgsp1_rep	three_prime_UTR	18330511	18330796	.	+	.	Parent=Os07t0491800-01
Chr07	irgsp1_rep	mRNA	18331928	18333468	.	-	.	ID=Os07t0491900-00;Name=Os07t0491900-00;Locus_id=Os07g0491900;Note=Similar to CTF2A (Fragment).;Transcript_evidence=AK368343 (DDBJ);ORF_evidence=Q9ZSN8 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Monooxygenase%2C FAD-binding (IPR002938),Aromatic-ring hydroxylase-like (IPR003042);TENOR=Os07t0491900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	18332973	18333468	.	-	0	Parent=Os07t0491900-00
Chr07	irgsp1_rep	CDS	18331928	18332475	.	-	2	Parent=Os07t0491900-00
Chr07	irgsp1_rep	mRNA	18334997	18337480	.	-	.	ID=Os07t0492000-01;Name=Os07t0492000-01;Locus_id=Os07g0492000;RAP-DB Gene Symbol Synonym(s)=OsNDPK1;RAP-DB Gene Name Synonym(s)=NUCLEOSIDE DIPHOSPHATE KINASE 1%2C Nucleoside diphosphate kinase 1;CGSNL Gene Name=NUCLEOSIDE DIPHOSPHATE KINASE 1;Oryzabase Gene Symbol Synonym(s)=OsNDPK1%2C NDK%2C rNDK%2C NDK1%2C NDKR%2C NDK-1;Oryzabase Gene Name Synonym(s)=nucleoside diphosphate kinase 1%2C Nucleoside diphosphate kinase%2C 16.8 kDa NDK%2C NDP kinase;Note=Nucleoside diphosphate kinase%2C Cell elongation process in coleoptile;Transcript_evidence=AK121796,D16292;ORF_evidence=Q07661;GO=Biological Process: nucleoside diphosphate phosphorylation (GO:0006165),Biological Process: GTP biosynthetic process (GO:0006183),Biological Process: UTP biosynthetic process (GO:0006228),Biological Process: CTP biosynthetic process (GO:0006241),Molecular Function: nucleoside diphosphate kinase activity (GO:0004550);InterPro=Nucleoside diphosphate kinase (IPR001564),Nucleoside diphosphate kinase-like domain (IPR034907),Nucleoside diphosphate kinase%2C active site (IPR023005);NIAS_FLcDNA=J033095O19;Manual Curation=May 24%2C 2017;Literature_PMID=21897044,10677437,8260630;Oryzabase=9876;Expression=AK121796;TENOR=Os07t0492000-01;KEGG=Os07t0492000-01 (EC:2.7.4.6);Subcellular location=cytosol (GO:0005829)
Chr07	irgsp1_rep	five_prime_UTR	18337363	18337480	.	-	.	Parent=Os07t0492000-01
Chr07	irgsp1_rep	CDS	18337312	18337362	.	-	0	Parent=Os07t0492000-01
Chr07	irgsp1_rep	CDS	18337065	18337113	.	-	0	Parent=Os07t0492000-01
Chr07	irgsp1_rep	CDS	18335853	18336084	.	-	2	Parent=Os07t0492000-01
Chr07	irgsp1_rep	CDS	18335294	18335411	.	-	1	Parent=Os07t0492000-01
Chr07	irgsp1_rep	three_prime_UTR	18334997	18335293	.	-	.	Parent=Os07t0492000-01
Chr07	irgsp1_rep	mRNA	18338217	18351636	.	-	.	ID=Os07t0492100-01;Name=Os07t0492100-01;Locus_id=Os07g0492100;Note=DNA helicase%2C UvrD/REP type domain containing protein.;Transcript_evidence=AK067461 (DDBJ%2C Best hit);ORF_evidence=D9IV51 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP-dependent DNA helicase activity (GO:0004003),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity (GO:0016787);InterPro=DNA helicase%2C UvrD/REP type (IPR000212),Helicase%2C superfamily 1%2C UvrD-related (IPR014016),DNA helicase%2C UvrD-like%2C C-terminal (IPR014017);NIAS_FLcDNA=J013102E06;Expression=AK067461;TENOR=Os07t0492100-01;KEGG=Os07t0492100-01
Chr07	irgsp1_rep	five_prime_UTR	18351573	18351636	.	-	.	Parent=Os07t0492100-01
Chr07	irgsp1_rep	CDS	18351183	18351572	.	-	0	Parent=Os07t0492100-01
Chr07	irgsp1_rep	CDS	18350622	18350795	.	-	0	Parent=Os07t0492100-01
Chr07	irgsp1_rep	CDS	18350117	18350266	.	-	0	Parent=Os07t0492100-01
Chr07	irgsp1_rep	CDS	18349708	18349932	.	-	0	Parent=Os07t0492100-01
Chr07	irgsp1_rep	CDS	18349083	18349124	.	-	0	Parent=Os07t0492100-01
Chr07	irgsp1_rep	CDS	18348823	18348986	.	-	0	Parent=Os07t0492100-01
Chr07	irgsp1_rep	CDS	18347966	18348152	.	-	1	Parent=Os07t0492100-01
Chr07	irgsp1_rep	CDS	18346799	18346855	.	-	0	Parent=Os07t0492100-01
Chr07	irgsp1_rep	CDS	18346611	18346716	.	-	0	Parent=Os07t0492100-01
Chr07	irgsp1_rep	CDS	18346393	18346526	.	-	2	Parent=Os07t0492100-01
Chr07	irgsp1_rep	CDS	18346201	18346275	.	-	0	Parent=Os07t0492100-01
Chr07	irgsp1_rep	CDS	18345964	18346089	.	-	0	Parent=Os07t0492100-01
Chr07	irgsp1_rep	CDS	18345760	18345888	.	-	0	Parent=Os07t0492100-01
Chr07	irgsp1_rep	CDS	18345603	18345686	.	-	0	Parent=Os07t0492100-01
Chr07	irgsp1_rep	CDS	18344399	18344515	.	-	0	Parent=Os07t0492100-01
Chr07	irgsp1_rep	CDS	18344214	18344314	.	-	0	Parent=Os07t0492100-01
Chr07	irgsp1_rep	CDS	18344004	18344070	.	-	1	Parent=Os07t0492100-01
Chr07	irgsp1_rep	CDS	18343388	18343438	.	-	0	Parent=Os07t0492100-01
Chr07	irgsp1_rep	CDS	18342786	18342863	.	-	0	Parent=Os07t0492100-01
Chr07	irgsp1_rep	CDS	18341642	18341845	.	-	0	Parent=Os07t0492100-01
Chr07	irgsp1_rep	CDS	18341513	18341551	.	-	0	Parent=Os07t0492100-01
Chr07	irgsp1_rep	CDS	18340959	18341030	.	-	0	Parent=Os07t0492100-01
Chr07	irgsp1_rep	CDS	18340800	18340886	.	-	0	Parent=Os07t0492100-01
Chr07	irgsp1_rep	CDS	18340668	18340724	.	-	0	Parent=Os07t0492100-01
Chr07	irgsp1_rep	CDS	18340275	18340435	.	-	0	Parent=Os07t0492100-01
Chr07	irgsp1_rep	CDS	18339992	18340085	.	-	1	Parent=Os07t0492100-01
Chr07	irgsp1_rep	CDS	18339658	18339708	.	-	0	Parent=Os07t0492100-01
Chr07	irgsp1_rep	CDS	18339384	18339446	.	-	0	Parent=Os07t0492100-01
Chr07	irgsp1_rep	CDS	18339201	18339261	.	-	0	Parent=Os07t0492100-01
Chr07	irgsp1_rep	CDS	18339016	18339077	.	-	2	Parent=Os07t0492100-01
Chr07	irgsp1_rep	CDS	18338711	18338800	.	-	0	Parent=Os07t0492100-01
Chr07	irgsp1_rep	three_prime_UTR	18338217	18338710	.	-	.	Parent=Os07t0492100-01
Chr07	irgsp1_rep	mRNA	18354973	18355659	.	+	.	ID=Os07t0492200-00;Name=Os07t0492200-00;Locus_id=Os07g0492200;Note=Similar to ribosomal protein L40%2C component of cytosolic 80S ribosome and 60S large subunit.;Transcript_evidence=FP097438 (DDBJ);ORF_evidence=XP_001700313.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin (IPR000626),Ubiquitin supergroup (IPR019955),Ubiquitin subgroup (IPR019956);TENOR=Os07t0492200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	18354973	18354999	.	+	.	Parent=Os07t0492200-00
Chr07	irgsp1_rep	CDS	18355000	18355099	.	+	0	Parent=Os07t0492200-00
Chr07	irgsp1_rep	CDS	18355479	18355639	.	+	2	Parent=Os07t0492200-00
Chr07	irgsp1_rep	three_prime_UTR	18355640	18355659	.	+	.	Parent=Os07t0492200-00
Chr07	irgsp1_rep	mRNA	18354998	18355662	.	-	.	ID=Os07t0492250-00;Name=Os07t0492250-00;Locus_id=Os07g0492250;Note=Hypothetical protein.;Transcript_evidence=BT016508 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0492250-00
Chr07	irgsp1_rep	five_prime_UTR	18355662	18355662	.	-	.	Parent=Os07t0492250-00
Chr07	irgsp1_rep	CDS	18355496	18355661	.	-	0	Parent=Os07t0492250-00
Chr07	irgsp1_rep	CDS	18354998	18355115	.	-	2	Parent=Os07t0492250-00
Chr07	irgsp1_rep	mRNA	18357751	18358722	.	-	.	ID=Os07t0492300-01;Name=Os07t0492300-01;Locus_id=Os07g0492300;Note=Hypothetical protein.;Transcript_evidence=AK108270 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-141-C02;Expression=AK108270;TENOR=Os07t0492300-01;KEGG=Os07t0492300-01
Chr07	irgsp1_rep	five_prime_UTR	18358210	18358722	.	-	.	Parent=Os07t0492300-01
Chr07	irgsp1_rep	CDS	18357862	18358209	.	-	0	Parent=Os07t0492300-01
Chr07	irgsp1_rep	three_prime_UTR	18357751	18357861	.	-	.	Parent=Os07t0492300-01
Chr07	irgsp1_rep	mRNA	18359905	18363910	.	-	.	ID=Os07t0492500-01;Name=Os07t0492500-01;Locus_id=Os07g0492500;Note=Conserved hypothetical protein.;Transcript_evidence=AK070002 (DDBJ%2C Best hit);ORF_evidence=B9FXB3 (UniProt);NIAS_FLcDNA=J023034C21;TENOR=Os07t0492500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	18363707	18363910	.	-	.	Parent=Os07t0492500-01
Chr07	irgsp1_rep	CDS	18363476	18363706	.	-	0	Parent=Os07t0492500-01
Chr07	irgsp1_rep	three_prime_UTR	18362019	18363475	.	-	.	Parent=Os07t0492500-01
Chr07	irgsp1_rep	three_prime_UTR	18360894	18361331	.	-	.	Parent=Os07t0492500-01
Chr07	irgsp1_rep	three_prime_UTR	18360543	18360801	.	-	.	Parent=Os07t0492500-01
Chr07	irgsp1_rep	three_prime_UTR	18360311	18360452	.	-	.	Parent=Os07t0492500-01
Chr07	irgsp1_rep	three_prime_UTR	18359905	18360233	.	-	.	Parent=Os07t0492500-01
Chr07	irgsp1_rep	mRNA	18394234	18399059	.	+	.	ID=Os07t0492966-00;Name=Os07t0492966-00;Locus_id=Os07g0492966;Note=Ankyrin repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8LHU0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);TENOR=Os07t0492966-00
Chr07	irgsp1_rep	CDS	18394234	18394585	.	+	0	Parent=Os07t0492966-00
Chr07	irgsp1_rep	CDS	18396888	18397537	.	+	2	Parent=Os07t0492966-00
Chr07	irgsp1_rep	CDS	18398340	18399059	.	+	0	Parent=Os07t0492966-00
Chr07	irgsp1_rep	mRNA	18409226	18410191	.	+	.	ID=Os07t0493033-00;Name=Os07t0493033-00;Locus_id=Os07g0493033;Note=Similar to UBiQuitin family member.;Transcript_evidence=AF475109 (DDBJ);ORF_evidence=NP_001150785.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L40e (IPR001975);TENOR=Os07t0493033-00
Chr07	irgsp1_rep	CDS	18409226	18409404	.	+	0	Parent=Os07t0493033-00
Chr07	irgsp1_rep	CDS	18410023	18410191	.	+	1	Parent=Os07t0493033-00
Chr07	irgsp1_rep	mRNA	18412069	18414214	.	+	.	ID=Os07t0493100-01;Name=Os07t0493100-01;Locus_id=Os07g0493100;Note=Hypothetical gene.;Transcript_evidence=AK068708 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J013160K24;Expression=AK068708;TENOR=Os07t0493100-01;KEGG=Os07t0493100-01
Chr07	irgsp1_rep	five_prime_UTR	18412069	18412349	.	+	.	Parent=Os07t0493100-01
Chr07	irgsp1_rep	CDS	18412350	18412601	.	+	0	Parent=Os07t0493100-01
Chr07	irgsp1_rep	three_prime_UTR	18412602	18412654	.	+	.	Parent=Os07t0493100-01
Chr07	irgsp1_rep	three_prime_UTR	18413114	18413180	.	+	.	Parent=Os07t0493100-01
Chr07	irgsp1_rep	three_prime_UTR	18413278	18413382	.	+	.	Parent=Os07t0493100-01
Chr07	irgsp1_rep	three_prime_UTR	18413490	18414214	.	+	.	Parent=Os07t0493100-01
Chr07	irgsp1_rep	mRNA	18416304	18420418	.	+	.	ID=Os07t0493200-01;Name=Os07t0493200-01;Locus_id=Os07g0493200;CGSNL Gene Symbol=WAK72;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 72;Oryzabase Gene Symbol Synonym(s)=OsWAK72%2C OsRLCK228%2C RLCK228;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 228;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK069794 (DDBJ%2C Best hit);ORF_evidence=Q84RT2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023030D14;Oryzabase=6962;TENOR=Os07t0493200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	18416304	18416672	.	+	.	Parent=Os07t0493200-01
Chr07	irgsp1_rep	five_prime_UTR	18416920	18417151	.	+	.	Parent=Os07t0493200-01
Chr07	irgsp1_rep	five_prime_UTR	18418201	18418211	.	+	.	Parent=Os07t0493200-01
Chr07	irgsp1_rep	CDS	18418212	18420173	.	+	0	Parent=Os07t0493200-01
Chr07	irgsp1_rep	three_prime_UTR	18420174	18420418	.	+	.	Parent=Os07t0493200-01
Chr07	irgsp1_rep	mRNA	18427885	18431430	.	+	.	ID=Os07t0493400-01;Name=Os07t0493400-01;Locus_id=Os07g0493400;Note=Similar to predicted protein.;Transcript_evidence=AK241048 (DDBJ%2C Best hit);ORF_evidence=XP_002872763.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Cellular Component: cytoplasm (GO:0005737),Cellular Component: integral to membrane (GO:0016021),Molecular Function: oxidoreductase activity%2C acting on the CH-CH group of donors (GO:0016627);InterPro=3-oxo-5-alpha-steroid 4-dehydrogenase%2C C-terminal (IPR001104);NIAS_FLcDNA=J065062C09;TENOR=Os07t0493400-01;KEGG=Os07t0493400-01 (EC:1.3.99.5)
Chr07	irgsp1_rep	five_prime_UTR	18427885	18427905	.	+	.	Parent=Os07t0493400-01
Chr07	irgsp1_rep	CDS	18427906	18428112	.	+	0	Parent=Os07t0493400-01
Chr07	irgsp1_rep	CDS	18428715	18429061	.	+	0	Parent=Os07t0493400-01
Chr07	irgsp1_rep	CDS	18429538	18429772	.	+	1	Parent=Os07t0493400-01
Chr07	irgsp1_rep	CDS	18430208	18430303	.	+	0	Parent=Os07t0493400-01
Chr07	irgsp1_rep	CDS	18430971	18431042	.	+	0	Parent=Os07t0493400-01
Chr07	irgsp1_rep	CDS	18431175	18431279	.	+	0	Parent=Os07t0493400-01
Chr07	irgsp1_rep	three_prime_UTR	18431280	18431430	.	+	.	Parent=Os07t0493400-01
Chr07	irgsp1_rep	mRNA	18428010	18429675	.	-	.	ID=Os07t0493601-00;Name=Os07t0493601-00;Locus_id=Os07g0493601;Note=Hypothetical gene.;Transcript_evidence=BT086913 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0493601-00;KEGG=Os07t0493601-00
Chr07	irgsp1_rep	five_prime_UTR	18429499	18429675	.	-	.	Parent=Os07t0493601-00
Chr07	irgsp1_rep	CDS	18429478	18429498	.	-	0	Parent=Os07t0493601-00
Chr07	irgsp1_rep	CDS	18428860	18429072	.	-	0	Parent=Os07t0493601-00
Chr07	irgsp1_rep	three_prime_UTR	18428723	18428859	.	-	.	Parent=Os07t0493601-00
Chr07	irgsp1_rep	three_prime_UTR	18428010	18428099	.	-	.	Parent=Os07t0493601-00
Chr07	irgsp1_rep	mRNA	18460423	18462456	.	+	.	ID=Os07t0493800-00;Name=Os07t0493800-00;Locus_id=Os07g0493800;CGSNL Gene Symbol=WAK71;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 71;Oryzabase Gene Symbol Synonym(s)=OsWAK71%2C OsRLCK229%2C RLCK229;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 229;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001059688.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Tyrosine-protein kinase%2C active site (IPR008266),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);Oryzabase=6961;TENOR=Os07t0493800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	18460423	18462456	.	+	0	Parent=Os07t0493800-00
Chr07	irgsp1_rep	mRNA	18464713	18466439	.	+	.	ID=Os07t0493850-01;Name=Os07t0493850-01;Locus_id=Os07g0493850;Note=Conserved hypothetical protein.;Transcript_evidence=AK242458 (DDBJ%2C Best hit);ORF_evidence=B8B6G6 (UniProt);NIAS_FLcDNA=J080097K10;TENOR=Os07t0493850-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	18464713	18464945	.	+	.	Parent=Os07t0493850-01
Chr07	irgsp1_rep	five_prime_UTR	18465106	18465255	.	+	.	Parent=Os07t0493850-01
Chr07	irgsp1_rep	five_prime_UTR	18466132	18466133	.	+	.	Parent=Os07t0493850-01
Chr07	irgsp1_rep	CDS	18466134	18466346	.	+	0	Parent=Os07t0493850-01
Chr07	irgsp1_rep	three_prime_UTR	18466347	18466439	.	+	.	Parent=Os07t0493850-01
Chr07	irgsp1_rep	mRNA	18479190	18481052	.	+	.	ID=Os07t0494300-00;Name=Os07t0494300-00;Locus_id=Os07g0494300;CGSNL Gene Symbol=WAK70;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 70;Oryzabase Gene Symbol Synonym(s)=OsWAK70%2C OsRLCK230%2C RLCK230;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 230;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q84RT2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=6960;TENOR=Os07t0494300-00
Chr07	irgsp1_rep	CDS	18479190	18481052	.	+	0	Parent=Os07t0494300-00
Chr07	irgsp1_rep	mRNA	18496789	18497820	.	-	.	ID=Os07t0494700-01;Name=Os07t0494700-01;Locus_id=Os07g0494700;Note=Hypothetical protein.;Transcript_evidence=AK064911 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013000M10;TENOR=Os07t0494700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	18497421	18497820	.	-	.	Parent=Os07t0494700-01
Chr07	irgsp1_rep	CDS	18496789	18497420	.	-	0	Parent=Os07t0494700-01
Chr07	irgsp1_rep	mRNA	18497999	18502813	.	+	.	ID=Os07t0494800-01;Name=Os07t0494800-01;Locus_id=Os07g0494800;CGSNL Gene Symbol=RLCK231;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 231;Oryzabase Gene Symbol Synonym(s)=OsRLCK231;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 231;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK318548 (DDBJ%2C Best hit);ORF_evidence=NP_001059688.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J075129H19;Oryzabase=18923;TENOR=Os07t0494800-01;KEGG=Os07t0494800-01
Chr07	irgsp1_rep	five_prime_UTR	18497999	18498363	.	+	.	Parent=Os07t0494800-01
Chr07	irgsp1_rep	five_prime_UTR	18500527	18500559	.	+	.	Parent=Os07t0494800-01
Chr07	irgsp1_rep	CDS	18500560	18501615	.	+	0	Parent=Os07t0494800-01
Chr07	irgsp1_rep	three_prime_UTR	18501616	18502813	.	+	.	Parent=Os07t0494800-01
Chr07	irgsp1_rep	mRNA	18503251	18504391	.	-	.	ID=Os07t0494900-01;Name=Os07t0494900-01;Locus_id=Os07g0494900;Note=Conserved hypothetical protein.;Transcript_evidence=AK059085 (DDBJ%2C Best hit);ORF_evidence=B9FXB8 (UniProt);NIAS_FLcDNA=001-022-B03;TENOR=Os07t0494900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	18504390	18504391	.	-	.	Parent=Os07t0494900-01
Chr07	irgsp1_rep	CDS	18504297	18504389	.	-	0	Parent=Os07t0494900-01
Chr07	irgsp1_rep	CDS	18504013	18504219	.	-	0	Parent=Os07t0494900-01
Chr07	irgsp1_rep	CDS	18503487	18503750	.	-	0	Parent=Os07t0494900-01
Chr07	irgsp1_rep	three_prime_UTR	18503251	18503486	.	-	.	Parent=Os07t0494900-01
Chr07	irgsp1_rep	mRNA	18509998	18515145	.	+	.	ID=Os07t0495000-01;Name=Os07t0495000-01;Locus_id=Os07g0495000;CGSNL Gene Symbol=UGlyAH;CGSNL Gene Name=UREIDOGLYCINE AMINOHYDROLASE;Oryzabase Gene Symbol Synonym(s)=OsUGlyAH;Oryzabase Gene Name Synonym(s)=Ureidoglycine aminohydrolase;Note=RmlC-like jelly roll fold domain containing protein.;Transcript_evidence=AK073883 (DDBJ%2C Best hit),AK060721 (DDBJ%2C Best hit),AK119204 (DDBJ%2C Best hit);ORF_evidence=XP_002870124.1 (RefSeq);InterPro=Cupin%2C RmlC-type (IPR011051),Cupin 2%2C conserved barrel (IPR013096),RmlC-like jelly roll fold (IPR014710);NIAS_FLcDNA=J033071H20,001-031-F10,001-041-D09;Oryzabase=20257;TENOR=Os07t0495000-01
Chr07	irgsp1_rep	five_prime_UTR	18509998	18510080	.	+	.	Parent=Os07t0495000-01
Chr07	irgsp1_rep	CDS	18510081	18510276	.	+	0	Parent=Os07t0495000-01
Chr07	irgsp1_rep	CDS	18510860	18510947	.	+	2	Parent=Os07t0495000-01
Chr07	irgsp1_rep	CDS	18511027	18511103	.	+	1	Parent=Os07t0495000-01
Chr07	irgsp1_rep	CDS	18511423	18511462	.	+	2	Parent=Os07t0495000-01
Chr07	irgsp1_rep	CDS	18511688	18511754	.	+	1	Parent=Os07t0495000-01
Chr07	irgsp1_rep	CDS	18512487	18512572	.	+	0	Parent=Os07t0495000-01
Chr07	irgsp1_rep	CDS	18512959	18513040	.	+	1	Parent=Os07t0495000-01
Chr07	irgsp1_rep	CDS	18513357	18513413	.	+	0	Parent=Os07t0495000-01
Chr07	irgsp1_rep	CDS	18513714	18513752	.	+	0	Parent=Os07t0495000-01
Chr07	irgsp1_rep	CDS	18513981	18514051	.	+	0	Parent=Os07t0495000-01
Chr07	irgsp1_rep	CDS	18514491	18514544	.	+	1	Parent=Os07t0495000-01
Chr07	irgsp1_rep	CDS	18514627	18514699	.	+	1	Parent=Os07t0495000-01
Chr07	irgsp1_rep	three_prime_UTR	18514700	18515145	.	+	.	Parent=Os07t0495000-01
Chr07	irgsp1_rep	mRNA	18519391	18523619	.	+	.	ID=Os07t0495100-01;Name=Os07t0495100-01;Locus_id=Os07g0495100;RAP-DB Gene Symbol Synonym(s)=CK2beta3;RAP-DB Gene Name Synonym(s)=casein kinase II beta-subunit 3%2C CK2 beta-subunit 3;CGSNL Gene Symbol=CK2BETA3;Oryzabase Gene Symbol Synonym(s)=CK2beta3%2C OsCK2beta3;Oryzabase Gene Name Synonym(s)=casein kinase II beta-subunit 3%2C CK2 beta-subunit 3;Note=Protein kinase beta subunit (regulatory subunit)%2C Regulation of phosphate transporters;Transcript_evidence=AK121850;ORF_evidence=Q84RS4;GO=Molecular Function: protein kinase regulator activity (GO:0019887),Cellular Component: protein kinase CK2 complex (GO:0005956);InterPro=Casein kinase II%2C regulatory subunit (IPR000704),Casein kinase II%2C regulatory subunit%2C alpha-helical (IPR016149),Casein kinase II%2C regulatory subunit%2C beta-sheet (IPR016150);NIAS_FLcDNA=J033101L24;Manual Curation=July 14%2C 2015;Literature_PMID=25724641;Oryzabase=19297;Expression=AK121850;TENOR=Os07t0495100-01;KEGG=Os07t0495100-01
Chr07	irgsp1_rep	five_prime_UTR	18519391	18519544	.	+	.	Parent=Os07t0495100-01
Chr07	irgsp1_rep	CDS	18519545	18519785	.	+	0	Parent=Os07t0495100-01
Chr07	irgsp1_rep	CDS	18521090	18521308	.	+	2	Parent=Os07t0495100-01
Chr07	irgsp1_rep	CDS	18522136	18522245	.	+	2	Parent=Os07t0495100-01
Chr07	irgsp1_rep	CDS	18522323	18522488	.	+	0	Parent=Os07t0495100-01
Chr07	irgsp1_rep	CDS	18522882	18523012	.	+	2	Parent=Os07t0495100-01
Chr07	irgsp1_rep	three_prime_UTR	18523013	18523619	.	+	.	Parent=Os07t0495100-01
Chr07	irgsp1_rep	mRNA	18528508	18531797	.	+	.	ID=Os07t0495150-00;Name=Os07t0495150-00;Locus_id=Os07g0495150;CGSNL Gene Symbol=RLCK232;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 232;Oryzabase Gene Symbol Synonym(s)=OsRLCK232%2C PTK9%2C OsPTK9;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 232%2C Protein Tyrosine Kinase 9;Note=Similar to Ser/thr protein kinase.;Transcript_evidence=BT038784 (DDBJ);ORF_evidence=A7UGD8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18924;TENOR=Os07t0495150-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	18528508	18528894	.	+	0	Parent=Os07t0495150-00
Chr07	irgsp1_rep	CDS	18529614	18529864	.	+	0	Parent=Os07t0495150-00
Chr07	irgsp1_rep	CDS	18530304	18530457	.	+	1	Parent=Os07t0495150-00
Chr07	irgsp1_rep	CDS	18531198	18531797	.	+	0	Parent=Os07t0495150-00
Chr07	irgsp1_rep	mRNA	18531190	18531750	.	-	.	ID=Os07t0495175-00;Name=Os07t0495175-00;Locus_id=Os07g0495175;Note=Hypothetical protein.;Transcript_evidence=FP092259 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0495175-00
Chr07	irgsp1_rep	five_prime_UTR	18531750	18531750	.	-	.	Parent=Os07t0495175-00
Chr07	irgsp1_rep	CDS	18531190	18531749	.	-	0	Parent=Os07t0495175-00
Chr07	irgsp1_rep	mRNA	18532547	18535080	.	-	.	ID=Os07t0495200-01;Name=Os07t0495200-01;Locus_id=Os07g0495200;Oryzabase Gene Symbol Synonym(s)=RMtATPd1;Oryzabase Gene Name Synonym(s)=mitochondrial ATP synthase d1;Note=Similar to ATP synthase delta' chain%2C mitochondrial precursor (EC 3.6.3.14).;Transcript_evidence=AK070990 (DDBJ%2C Best hit);ORF_evidence=NP_001147558.1 (RefSeq);GO=Biological Process: ATP synthesis coupled proton transport (GO:0015986),Cellular Component: proton-transporting ATP synthase complex%2C catalytic core F(1) (GO:0045261),Molecular Function: hydrogen ion transporting ATP synthase activity%2C rotational mechanism (GO:0046933),Molecular Function: proton-transporting ATPase activity%2C rotational mechanism (GO:0046961);InterPro=ATPase%2C F1 complex%2C delta/epsilon subunit (IPR001469),ATPase%2C F1 complex%2C delta/epsilon subunit%2C N-terminal (IPR020546);NIAS_FLcDNA=J023078O13;Oryzabase=14100;Expression=AK070990;TENOR=Os07t0495200-01;KEGG=Os07t0495200-01 (EC:3.6.3.14)
Chr07	irgsp1_rep	five_prime_UTR	18534997	18535080	.	-	.	Parent=Os07t0495200-01
Chr07	irgsp1_rep	CDS	18534724	18534996	.	-	0	Parent=Os07t0495200-01
Chr07	irgsp1_rep	CDS	18532778	18533122	.	-	0	Parent=Os07t0495200-01
Chr07	irgsp1_rep	three_prime_UTR	18532547	18532777	.	-	.	Parent=Os07t0495200-01
Chr07	irgsp1_rep	mRNA	18536376	18541354	.	+	.	ID=Os07t0495250-01;Name=Os07t0495250-01;Locus_id=Os07g0495250;Note=Hypothetical gene.;Transcript_evidence=AK287724 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065137L03;TENOR=Os07t0495250-01;KEGG=Os07t0495250-01
Chr07	irgsp1_rep	five_prime_UTR	18536376	18537247	.	+	.	Parent=Os07t0495250-01
Chr07	irgsp1_rep	five_prime_UTR	18537342	18537824	.	+	.	Parent=Os07t0495250-01
Chr07	irgsp1_rep	CDS	18537825	18538136	.	+	0	Parent=Os07t0495250-01
Chr07	irgsp1_rep	three_prime_UTR	18538137	18539956	.	+	.	Parent=Os07t0495250-01
Chr07	irgsp1_rep	three_prime_UTR	18540999	18541354	.	+	.	Parent=Os07t0495250-01
Chr07	irgsp1_rep	mRNA	18536473	18540406	.	-	.	ID=Os07t0495300-00;Name=Os07t0495300-00;Locus_id=Os07g0495300;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001059695.2 (RefSeq);InterPro=Pentatricopeptide repeat (IPR002885);TENOR=Os07t0495300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	18540320	18540406	.	-	0	Parent=Os07t0495300-00
Chr07	irgsp1_rep	CDS	18538340	18539956	.	-	0	Parent=Os07t0495300-00
Chr07	irgsp1_rep	CDS	18536473	18536502	.	-	0	Parent=Os07t0495300-00
Chr07	irgsp1_rep	mRNA	18540951	18541277	.	-	.	ID=Os07t0495400-00;Name=Os07t0495400-00;Locus_id=Os07g0495400;Note=ATP synthase delta' chain%2C mitochondrial precursor (EC 3.6.3.14).;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001147558.1 (RefSeq);TENOR=Os07t0495400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	18540951	18541277	.	-	0	Parent=Os07t0495400-00
Chr07	irgsp1_rep	mRNA	18555542	18565027	.	+	.	ID=Os07t0495900-01;Name=Os07t0495900-01;Locus_id=Os07g0495900;Note=Similar to low-level beta-amylase 1.;Transcript_evidence=AK067729 (DDBJ%2C Best hit);ORF_evidence=XP_002865151.1 (RefSeq);GO=Biological Process: nuclear-transcribed mRNA catabolic process%2C nonsense-mediated decay (GO:0000184),Cellular Component: cytoplasm (GO:0005737),Molecular Function: DNA binding (GO:0003677),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: hydrolase activity (GO:0016787);InterPro=Helicase/UvrB domain (IPR006935),DEAD-like helicase (IPR014001),RNA helicase UPF1%2C UPF2-interacting domain (IPR018999);NIAS_FLcDNA=J013117F21;TENOR=Os07t0495900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	18555542	18555542	.	+	.	Parent=Os07t0495900-01
Chr07	irgsp1_rep	CDS	18555543	18555683	.	+	0	Parent=Os07t0495900-01
Chr07	irgsp1_rep	CDS	18556588	18556839	.	+	0	Parent=Os07t0495900-01
Chr07	irgsp1_rep	CDS	18556946	18557116	.	+	0	Parent=Os07t0495900-01
Chr07	irgsp1_rep	CDS	18557272	18557322	.	+	0	Parent=Os07t0495900-01
Chr07	irgsp1_rep	CDS	18557447	18557539	.	+	0	Parent=Os07t0495900-01
Chr07	irgsp1_rep	CDS	18557704	18557799	.	+	0	Parent=Os07t0495900-01
Chr07	irgsp1_rep	CDS	18557897	18557947	.	+	0	Parent=Os07t0495900-01
Chr07	irgsp1_rep	CDS	18558031	18558149	.	+	0	Parent=Os07t0495900-01
Chr07	irgsp1_rep	CDS	18558488	18558596	.	+	1	Parent=Os07t0495900-01
Chr07	irgsp1_rep	CDS	18558970	18559092	.	+	0	Parent=Os07t0495900-01
Chr07	irgsp1_rep	CDS	18559169	18559240	.	+	0	Parent=Os07t0495900-01
Chr07	irgsp1_rep	CDS	18559542	18559613	.	+	0	Parent=Os07t0495900-01
Chr07	irgsp1_rep	CDS	18559704	18559770	.	+	0	Parent=Os07t0495900-01
Chr07	irgsp1_rep	CDS	18559839	18559981	.	+	2	Parent=Os07t0495900-01
Chr07	irgsp1_rep	CDS	18560073	18560144	.	+	0	Parent=Os07t0495900-01
Chr07	irgsp1_rep	CDS	18560211	18560339	.	+	0	Parent=Os07t0495900-01
Chr07	irgsp1_rep	CDS	18560896	18561051	.	+	0	Parent=Os07t0495900-01
Chr07	irgsp1_rep	CDS	18561158	18561271	.	+	0	Parent=Os07t0495900-01
Chr07	irgsp1_rep	CDS	18561370	18561468	.	+	0	Parent=Os07t0495900-01
Chr07	irgsp1_rep	CDS	18561553	18561630	.	+	0	Parent=Os07t0495900-01
Chr07	irgsp1_rep	CDS	18561981	18562115	.	+	0	Parent=Os07t0495900-01
Chr07	irgsp1_rep	CDS	18562660	18562734	.	+	0	Parent=Os07t0495900-01
Chr07	irgsp1_rep	CDS	18562826	18562940	.	+	0	Parent=Os07t0495900-01
Chr07	irgsp1_rep	CDS	18563037	18563407	.	+	2	Parent=Os07t0495900-01
Chr07	irgsp1_rep	CDS	18563482	18563544	.	+	0	Parent=Os07t0495900-01
Chr07	irgsp1_rep	CDS	18563628	18563699	.	+	0	Parent=Os07t0495900-01
Chr07	irgsp1_rep	CDS	18563864	18563992	.	+	0	Parent=Os07t0495900-01
Chr07	irgsp1_rep	CDS	18564091	18564207	.	+	0	Parent=Os07t0495900-01
Chr07	irgsp1_rep	CDS	18564289	18564369	.	+	0	Parent=Os07t0495900-01
Chr07	irgsp1_rep	three_prime_UTR	18564370	18565027	.	+	.	Parent=Os07t0495900-01
Chr07	irgsp1_rep	mRNA	18557071	18565198	.	+	.	ID=Os07t0495900-02;Name=Os07t0495900-02;Locus_id=Os07g0495900;Note=Similar to predicted protein.;Transcript_evidence=AK065813 (DDBJ%2C Best hit);ORF_evidence=XP_002865151.1 (RefSeq);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity (GO:0016787);InterPro=Helicase/UvrB domain (IPR006935),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J013042O08;Expression=AK065813;TENOR=Os07t0495900-02;KEGG=Os07t0495900-02
Chr07	irgsp1_rep	five_prime_UTR	18557071	18557071	.	+	.	Parent=Os07t0495900-02
Chr07	irgsp1_rep	CDS	18557072	18557116	.	+	0	Parent=Os07t0495900-02
Chr07	irgsp1_rep	CDS	18557272	18557322	.	+	0	Parent=Os07t0495900-02
Chr07	irgsp1_rep	CDS	18557447	18557539	.	+	0	Parent=Os07t0495900-02
Chr07	irgsp1_rep	CDS	18557704	18557799	.	+	0	Parent=Os07t0495900-02
Chr07	irgsp1_rep	CDS	18557897	18557947	.	+	0	Parent=Os07t0495900-02
Chr07	irgsp1_rep	CDS	18558031	18558149	.	+	0	Parent=Os07t0495900-02
Chr07	irgsp1_rep	CDS	18558488	18558596	.	+	1	Parent=Os07t0495900-02
Chr07	irgsp1_rep	CDS	18558970	18559092	.	+	0	Parent=Os07t0495900-02
Chr07	irgsp1_rep	CDS	18559169	18559240	.	+	0	Parent=Os07t0495900-02
Chr07	irgsp1_rep	CDS	18559542	18559613	.	+	0	Parent=Os07t0495900-02
Chr07	irgsp1_rep	CDS	18559704	18559770	.	+	0	Parent=Os07t0495900-02
Chr07	irgsp1_rep	CDS	18559839	18559981	.	+	2	Parent=Os07t0495900-02
Chr07	irgsp1_rep	CDS	18560073	18560144	.	+	0	Parent=Os07t0495900-02
Chr07	irgsp1_rep	CDS	18560211	18560339	.	+	0	Parent=Os07t0495900-02
Chr07	irgsp1_rep	CDS	18560896	18561051	.	+	0	Parent=Os07t0495900-02
Chr07	irgsp1_rep	CDS	18561158	18561271	.	+	0	Parent=Os07t0495900-02
Chr07	irgsp1_rep	CDS	18561370	18561468	.	+	0	Parent=Os07t0495900-02
Chr07	irgsp1_rep	CDS	18561553	18561630	.	+	0	Parent=Os07t0495900-02
Chr07	irgsp1_rep	CDS	18561981	18562115	.	+	0	Parent=Os07t0495900-02
Chr07	irgsp1_rep	CDS	18562660	18562734	.	+	0	Parent=Os07t0495900-02
Chr07	irgsp1_rep	CDS	18562826	18562940	.	+	0	Parent=Os07t0495900-02
Chr07	irgsp1_rep	CDS	18563037	18563407	.	+	2	Parent=Os07t0495900-02
Chr07	irgsp1_rep	CDS	18563482	18563544	.	+	0	Parent=Os07t0495900-02
Chr07	irgsp1_rep	CDS	18563628	18563699	.	+	0	Parent=Os07t0495900-02
Chr07	irgsp1_rep	CDS	18563864	18563992	.	+	0	Parent=Os07t0495900-02
Chr07	irgsp1_rep	CDS	18564091	18564207	.	+	0	Parent=Os07t0495900-02
Chr07	irgsp1_rep	CDS	18564289	18564369	.	+	0	Parent=Os07t0495900-02
Chr07	irgsp1_rep	three_prime_UTR	18564370	18565198	.	+	.	Parent=Os07t0495900-02
Chr07	irgsp1_rep	mRNA	18559543	18565200	.	+	.	ID=Os07t0495900-03;Name=Os07t0495900-03;Locus_id=Os07g0495900;Note=Similar to predicted protein.;Transcript_evidence=AK100573 (DDBJ%2C Best hit);ORF_evidence=XP_002865151.1 (RefSeq);NIAS_FLcDNA=J023105F12;Expression=AK100573;TENOR=Os07t0495900-03;KEGG=Os07t0495900-03
Chr07	irgsp1_rep	five_prime_UTR	18559543	18559544	.	+	.	Parent=Os07t0495900-03
Chr07	irgsp1_rep	CDS	18559545	18559613	.	+	0	Parent=Os07t0495900-03
Chr07	irgsp1_rep	CDS	18559704	18559770	.	+	0	Parent=Os07t0495900-03
Chr07	irgsp1_rep	CDS	18559839	18559981	.	+	2	Parent=Os07t0495900-03
Chr07	irgsp1_rep	CDS	18560073	18560144	.	+	0	Parent=Os07t0495900-03
Chr07	irgsp1_rep	CDS	18560211	18560339	.	+	0	Parent=Os07t0495900-03
Chr07	irgsp1_rep	CDS	18560896	18561051	.	+	0	Parent=Os07t0495900-03
Chr07	irgsp1_rep	CDS	18561158	18561271	.	+	0	Parent=Os07t0495900-03
Chr07	irgsp1_rep	CDS	18561370	18561468	.	+	0	Parent=Os07t0495900-03
Chr07	irgsp1_rep	CDS	18561553	18561630	.	+	0	Parent=Os07t0495900-03
Chr07	irgsp1_rep	CDS	18561981	18562115	.	+	0	Parent=Os07t0495900-03
Chr07	irgsp1_rep	CDS	18562660	18562734	.	+	0	Parent=Os07t0495900-03
Chr07	irgsp1_rep	CDS	18562826	18562940	.	+	0	Parent=Os07t0495900-03
Chr07	irgsp1_rep	CDS	18563037	18563407	.	+	2	Parent=Os07t0495900-03
Chr07	irgsp1_rep	CDS	18563482	18563544	.	+	0	Parent=Os07t0495900-03
Chr07	irgsp1_rep	CDS	18563628	18563699	.	+	0	Parent=Os07t0495900-03
Chr07	irgsp1_rep	CDS	18563864	18563992	.	+	0	Parent=Os07t0495900-03
Chr07	irgsp1_rep	CDS	18564091	18564207	.	+	0	Parent=Os07t0495900-03
Chr07	irgsp1_rep	CDS	18564289	18564369	.	+	0	Parent=Os07t0495900-03
Chr07	irgsp1_rep	three_prime_UTR	18564370	18565200	.	+	.	Parent=Os07t0495900-03
Chr07	irgsp1_rep	mRNA	18562658	18565210	.	+	.	ID=Os07t0495900-04;Name=Os07t0495900-04;Locus_id=Os07g0495900;Note=Similar to predicted protein.;Transcript_evidence=AK060293 (DDBJ%2C Best hit);ORF_evidence=NP_199512.2 (RefSeq);NIAS_FLcDNA=001-006-E02;Expression=AK060293;TENOR=Os07t0495900-04;KEGG=Os07t0495900-04
Chr07	irgsp1_rep	five_prime_UTR	18562658	18562659	.	+	.	Parent=Os07t0495900-04
Chr07	irgsp1_rep	CDS	18562660	18562734	.	+	0	Parent=Os07t0495900-04
Chr07	irgsp1_rep	CDS	18562826	18562940	.	+	0	Parent=Os07t0495900-04
Chr07	irgsp1_rep	CDS	18563037	18563407	.	+	2	Parent=Os07t0495900-04
Chr07	irgsp1_rep	CDS	18563628	18563699	.	+	0	Parent=Os07t0495900-04
Chr07	irgsp1_rep	CDS	18563864	18563992	.	+	0	Parent=Os07t0495900-04
Chr07	irgsp1_rep	CDS	18564091	18564207	.	+	0	Parent=Os07t0495900-04
Chr07	irgsp1_rep	CDS	18564289	18564369	.	+	0	Parent=Os07t0495900-04
Chr07	irgsp1_rep	three_prime_UTR	18564370	18565210	.	+	.	Parent=Os07t0495900-04
Chr07	irgsp1_rep	mRNA	18578895	18582768	.	-	.	ID=Os07t0496000-01;Name=Os07t0496000-01;Locus_id=Os07g0496000;Oryzabase Gene Symbol Synonym(s)=OsRab6A1%2C Rab6A1;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab6A1;Note=Similar to Nt-rab6 protein.;Transcript_evidence=AK111986 (DDBJ%2C Best hit);ORF_evidence=NP_001150271.1 (RefSeq);GO=Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225);NIAS_FLcDNA=001-025-G04;Oryzabase=11084;Expression=AK111986;TENOR=Os07t0496000-01;KEGG=Os07t0496000-01
Chr07	irgsp1_rep	five_prime_UTR	18582542	18582768	.	-	.	Parent=Os07t0496000-01
Chr07	irgsp1_rep	CDS	18582425	18582541	.	-	0	Parent=Os07t0496000-01
Chr07	irgsp1_rep	CDS	18581447	18581517	.	-	0	Parent=Os07t0496000-01
Chr07	irgsp1_rep	CDS	18581261	18581349	.	-	1	Parent=Os07t0496000-01
Chr07	irgsp1_rep	CDS	18580918	18581029	.	-	2	Parent=Os07t0496000-01
Chr07	irgsp1_rep	CDS	18579628	18579718	.	-	1	Parent=Os07t0496000-01
Chr07	irgsp1_rep	CDS	18579291	18579437	.	-	0	Parent=Os07t0496000-01
Chr07	irgsp1_rep	three_prime_UTR	18578895	18579290	.	-	.	Parent=Os07t0496000-01
Chr07	irgsp1_rep	mRNA	18587424	18596123	.	+	.	ID=Os07t0496200-01;Name=Os07t0496200-01;Locus_id=Os07g0496200;Note=Similar to NAD-dependent malic enzyme 62 kDa isoform%2C mitochondrial precursor (EC 1.1.1.39) (NAD-ME).;Transcript_evidence=AK065801 (DDBJ%2C Best hit);ORF_evidence=C0P758 (UniProt);GO=Biological Process: malate metabolic process (GO:0006108),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: malic enzyme activity (GO:0004470),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: malate dehydrogenase (oxaloacetate-decarboxylating) activity (GO:0016619),Molecular Function: metal ion binding (GO:0046872),Molecular Function: NAD binding (GO:0051287);InterPro=Malic oxidoreductase (IPR001891),Malic enzyme%2C N-terminal (IPR012301),Malic enzyme%2C NAD-binding (IPR012302),Malic enzyme%2C conserved site (IPR015884),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013036E18;Expression=AK065801;TENOR=Os07t0496200-01;KEGG=Os07t0496200-01 (EC:1.1.1.39%2C EC:1.1.1.40)
Chr07	irgsp1_rep	five_prime_UTR	18587424	18587649	.	+	.	Parent=Os07t0496200-01
Chr07	irgsp1_rep	CDS	18587650	18587817	.	+	0	Parent=Os07t0496200-01
Chr07	irgsp1_rep	CDS	18587928	18588024	.	+	0	Parent=Os07t0496200-01
Chr07	irgsp1_rep	CDS	18588747	18588865	.	+	2	Parent=Os07t0496200-01
Chr07	irgsp1_rep	CDS	18589100	18589267	.	+	0	Parent=Os07t0496200-01
Chr07	irgsp1_rep	CDS	18589471	18589599	.	+	0	Parent=Os07t0496200-01
Chr07	irgsp1_rep	CDS	18590192	18590252	.	+	0	Parent=Os07t0496200-01
Chr07	irgsp1_rep	CDS	18590507	18590610	.	+	2	Parent=Os07t0496200-01
Chr07	irgsp1_rep	CDS	18590716	18590799	.	+	0	Parent=Os07t0496200-01
Chr07	irgsp1_rep	CDS	18591483	18591589	.	+	0	Parent=Os07t0496200-01
Chr07	irgsp1_rep	CDS	18592085	18592196	.	+	1	Parent=Os07t0496200-01
Chr07	irgsp1_rep	CDS	18592779	18592892	.	+	0	Parent=Os07t0496200-01
Chr07	irgsp1_rep	CDS	18593346	18593411	.	+	0	Parent=Os07t0496200-01
Chr07	irgsp1_rep	CDS	18593816	18593888	.	+	0	Parent=Os07t0496200-01
Chr07	irgsp1_rep	CDS	18593975	18594061	.	+	2	Parent=Os07t0496200-01
Chr07	irgsp1_rep	CDS	18594289	18594343	.	+	2	Parent=Os07t0496200-01
Chr07	irgsp1_rep	CDS	18594448	18594519	.	+	1	Parent=Os07t0496200-01
Chr07	irgsp1_rep	CDS	18594618	18594680	.	+	1	Parent=Os07t0496200-01
Chr07	irgsp1_rep	CDS	18594756	18594870	.	+	1	Parent=Os07t0496200-01
Chr07	irgsp1_rep	CDS	18594956	18595030	.	+	0	Parent=Os07t0496200-01
Chr07	irgsp1_rep	three_prime_UTR	18595031	18596123	.	+	.	Parent=Os07t0496200-01
Chr07	irgsp1_rep	mRNA	18587516	18595142	.	+	.	ID=Os07t0496200-02;Name=Os07t0496200-02;Locus_id=Os07g0496200;Note=Similar to NAD-dependent malic enzyme 62 kDa isoform%2C mitochondrial precursor (EC 1.1.1.39) (NAD-ME).;Transcript_evidence=AK064866 (DDBJ%2C Best hit);ORF_evidence=C0P758 (UniProt);GO=Biological Process: malate metabolic process (GO:0006108),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: malic enzyme activity (GO:0004470),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: malate dehydrogenase (oxaloacetate-decarboxylating) activity (GO:0016619),Molecular Function: metal ion binding (GO:0046872),Molecular Function: NAD binding (GO:0051287);InterPro=Malic oxidoreductase (IPR001891),Malic enzyme%2C N-terminal (IPR012301),Malic enzyme%2C NAD-binding (IPR012302),Malic enzyme%2C conserved site (IPR015884),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013000I18;Expression=AK064866;TENOR=Os07t0496200-02;KEGG=Os07t0496200-02 (EC:1.1.1.39%2C EC:1.1.1.40)
Chr07	irgsp1_rep	five_prime_UTR	18587516	18587649	.	+	.	Parent=Os07t0496200-02
Chr07	irgsp1_rep	CDS	18587650	18587817	.	+	0	Parent=Os07t0496200-02
Chr07	irgsp1_rep	CDS	18587928	18588024	.	+	0	Parent=Os07t0496200-02
Chr07	irgsp1_rep	CDS	18588747	18588865	.	+	2	Parent=Os07t0496200-02
Chr07	irgsp1_rep	CDS	18589100	18589267	.	+	0	Parent=Os07t0496200-02
Chr07	irgsp1_rep	CDS	18589471	18589599	.	+	0	Parent=Os07t0496200-02
Chr07	irgsp1_rep	CDS	18590192	18590252	.	+	0	Parent=Os07t0496200-02
Chr07	irgsp1_rep	CDS	18590507	18590610	.	+	2	Parent=Os07t0496200-02
Chr07	irgsp1_rep	CDS	18590716	18590799	.	+	0	Parent=Os07t0496200-02
Chr07	irgsp1_rep	CDS	18591483	18591589	.	+	0	Parent=Os07t0496200-02
Chr07	irgsp1_rep	CDS	18592085	18592196	.	+	1	Parent=Os07t0496200-02
Chr07	irgsp1_rep	CDS	18592779	18592892	.	+	0	Parent=Os07t0496200-02
Chr07	irgsp1_rep	CDS	18593346	18593411	.	+	0	Parent=Os07t0496200-02
Chr07	irgsp1_rep	CDS	18593816	18593888	.	+	0	Parent=Os07t0496200-02
Chr07	irgsp1_rep	CDS	18593975	18594061	.	+	2	Parent=Os07t0496200-02
Chr07	irgsp1_rep	CDS	18594289	18594343	.	+	2	Parent=Os07t0496200-02
Chr07	irgsp1_rep	CDS	18594448	18594519	.	+	1	Parent=Os07t0496200-02
Chr07	irgsp1_rep	CDS	18594618	18594680	.	+	1	Parent=Os07t0496200-02
Chr07	irgsp1_rep	CDS	18594756	18594870	.	+	1	Parent=Os07t0496200-02
Chr07	irgsp1_rep	CDS	18594956	18595030	.	+	0	Parent=Os07t0496200-02
Chr07	irgsp1_rep	three_prime_UTR	18595031	18595142	.	+	.	Parent=Os07t0496200-02
Chr07	irgsp1_rep	mRNA	18589185	18595390	.	+	.	ID=Os07t0496200-03;Name=Os07t0496200-03;Locus_id=Os07g0496200;Note=Similar to Malic enzyme.;Transcript_evidence=AK061706 (DDBJ%2C Best hit);ORF_evidence=B8B6D4 (UniProt);GO=Biological Process: malate metabolic process (GO:0006108),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: malic enzyme activity (GO:0004470),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: malate dehydrogenase (oxaloacetate-decarboxylating) activity (GO:0016619),Molecular Function: metal ion binding (GO:0046872),Molecular Function: NAD binding (GO:0051287);InterPro=Malic oxidoreductase (IPR001891),Malic enzyme%2C N-terminal (IPR012301),Malic enzyme%2C NAD-binding (IPR012302),Malic enzyme%2C conserved site (IPR015884),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-037-E11;Expression=AK061706;TENOR=Os07t0496200-03;KEGG=Os07t0496200-03 (EC:1.1.1.40)
Chr07	irgsp1_rep	five_prime_UTR	18589185	18589186	.	+	.	Parent=Os07t0496200-03
Chr07	irgsp1_rep	CDS	18589187	18589267	.	+	0	Parent=Os07t0496200-03
Chr07	irgsp1_rep	CDS	18589471	18589599	.	+	0	Parent=Os07t0496200-03
Chr07	irgsp1_rep	CDS	18590192	18590252	.	+	0	Parent=Os07t0496200-03
Chr07	irgsp1_rep	CDS	18590507	18590610	.	+	2	Parent=Os07t0496200-03
Chr07	irgsp1_rep	CDS	18590716	18590799	.	+	0	Parent=Os07t0496200-03
Chr07	irgsp1_rep	CDS	18591483	18591589	.	+	0	Parent=Os07t0496200-03
Chr07	irgsp1_rep	CDS	18592085	18592196	.	+	1	Parent=Os07t0496200-03
Chr07	irgsp1_rep	CDS	18592779	18592892	.	+	0	Parent=Os07t0496200-03
Chr07	irgsp1_rep	CDS	18593346	18593411	.	+	0	Parent=Os07t0496200-03
Chr07	irgsp1_rep	CDS	18593816	18593888	.	+	0	Parent=Os07t0496200-03
Chr07	irgsp1_rep	CDS	18593975	18594061	.	+	2	Parent=Os07t0496200-03
Chr07	irgsp1_rep	CDS	18594289	18594343	.	+	2	Parent=Os07t0496200-03
Chr07	irgsp1_rep	CDS	18594448	18594519	.	+	1	Parent=Os07t0496200-03
Chr07	irgsp1_rep	CDS	18594618	18594680	.	+	1	Parent=Os07t0496200-03
Chr07	irgsp1_rep	CDS	18594756	18594870	.	+	1	Parent=Os07t0496200-03
Chr07	irgsp1_rep	CDS	18594956	18595030	.	+	0	Parent=Os07t0496200-03
Chr07	irgsp1_rep	three_prime_UTR	18595031	18595390	.	+	.	Parent=Os07t0496200-03
Chr07	irgsp1_rep	mRNA	18598157	18599606	.	+	.	ID=Os07t0496250-01;Name=Os07t0496250-01;Locus_id=Os07g0496250;Note=Similar to Expansin-like B1.;Transcript_evidence=AK240902 (DDBJ%2C Best hit);ORF_evidence=Q850K7 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);NIAS_FLcDNA=J065034J18;TENOR=Os07t0496250-01;KEGG=Os07t0496250-01
Chr07	irgsp1_rep	five_prime_UTR	18598157	18598215	.	+	.	Parent=Os07t0496250-01
Chr07	irgsp1_rep	CDS	18598216	18598351	.	+	0	Parent=Os07t0496250-01
Chr07	irgsp1_rep	CDS	18598504	18598610	.	+	2	Parent=Os07t0496250-01
Chr07	irgsp1_rep	CDS	18598693	18598874	.	+	0	Parent=Os07t0496250-01
Chr07	irgsp1_rep	CDS	18599046	18599178	.	+	1	Parent=Os07t0496250-01
Chr07	irgsp1_rep	CDS	18599287	18599499	.	+	0	Parent=Os07t0496250-01
Chr07	irgsp1_rep	three_prime_UTR	18599500	18599606	.	+	.	Parent=Os07t0496250-01
Chr07	irgsp1_rep	mRNA	18599778	18603406	.	-	.	ID=Os07t0496300-01;Name=Os07t0496300-01;Locus_id=Os07g0496300;Note=MULE transposase%2C conserved domain domain containing protein.;Transcript_evidence=AK119387 (DDBJ%2C Best hit);ORF_evidence=XP_002460729.1 (RefSeq);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=FAR1 DNA binding domain (IPR004330),Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);NIAS_FLcDNA=001-132-C03;Expression=AK119387;TENOR=Os07t0496300-01;KEGG=Os07t0496300-01
Chr07	irgsp1_rep	five_prime_UTR	18603394	18603406	.	-	.	Parent=Os07t0496300-01
Chr07	irgsp1_rep	CDS	18600843	18603393	.	-	0	Parent=Os07t0496300-01
Chr07	irgsp1_rep	CDS	18600751	18600767	.	-	2	Parent=Os07t0496300-01
Chr07	irgsp1_rep	three_prime_UTR	18600714	18600750	.	-	.	Parent=Os07t0496300-01
Chr07	irgsp1_rep	three_prime_UTR	18599778	18600023	.	-	.	Parent=Os07t0496300-01
Chr07	irgsp1_rep	mRNA	18600809	18603414	.	+	.	ID=Os07t0496401-00;Name=Os07t0496401-00;Locus_id=Os07g0496401;Note=Hypothetical protein.;Transcript_evidence=tplb0035k20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0496401-00
Chr07	irgsp1_rep	five_prime_UTR	18600809	18602694	.	+	.	Parent=Os07t0496401-00
Chr07	irgsp1_rep	CDS	18602695	18603408	.	+	0	Parent=Os07t0496401-00
Chr07	irgsp1_rep	three_prime_UTR	18603409	18603414	.	+	.	Parent=Os07t0496401-00
Chr07	irgsp1_rep	mRNA	18611376	18614400	.	-	.	ID=Os07t0496500-00;Name=Os07t0496500-00;Locus_id=Os07g0496500;Note=Hypothetical protein.;Transcript_evidence=tplb0058p02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0496500-00
Chr07	irgsp1_rep	five_prime_UTR	18613945	18614400	.	-	.	Parent=Os07t0496500-00
Chr07	irgsp1_rep	five_prime_UTR	18613754	18613825	.	-	.	Parent=Os07t0496500-00
Chr07	irgsp1_rep	five_prime_UTR	18611775	18613673	.	-	.	Parent=Os07t0496500-00
Chr07	irgsp1_rep	CDS	18611382	18611774	.	-	0	Parent=Os07t0496500-00
Chr07	irgsp1_rep	three_prime_UTR	18611376	18611381	.	-	.	Parent=Os07t0496500-00
Chr07	irgsp1_rep	mRNA	18613557	18614475	.	+	.	ID=Os07t0496600-00;Name=Os07t0496600-00;Locus_id=Os07g0496600;Note=Hypothetical conserved gene.;Transcript_evidence=CU861754 (DDBJ%2C Best hit);ORF_evidence=B9FXD0 (UniProt);TENOR=Os07t0496600-00;KEGG=Os07t0496600-00
Chr07	irgsp1_rep	CDS	18613557	18613673	.	+	0	Parent=Os07t0496600-00
Chr07	irgsp1_rep	CDS	18613754	18613825	.	+	0	Parent=Os07t0496600-00
Chr07	irgsp1_rep	CDS	18613945	18614034	.	+	0	Parent=Os07t0496600-00
Chr07	irgsp1_rep	three_prime_UTR	18614035	18614475	.	+	.	Parent=Os07t0496600-00
Chr07	irgsp1_rep	mRNA	18618291	18619651	.	+	.	ID=Os07t0496700-01;Name=Os07t0496700-01;Locus_id=Os07g0496700;Note=Phosphate-induced protein 1 conserved region family protein.;Transcript_evidence=AK064235 (DDBJ%2C Best hit);ORF_evidence=NP_001151052.1 (RefSeq);InterPro=Phosphate-induced protein 1 (IPR006766);NIAS_FLcDNA=002-104-H11;Expression=AK064235;TENOR=Os07t0496700-01;KEGG=Os07t0496700-01
Chr07	irgsp1_rep	five_prime_UTR	18618291	18618311	.	+	.	Parent=Os07t0496700-01
Chr07	irgsp1_rep	CDS	18618312	18619295	.	+	0	Parent=Os07t0496700-01
Chr07	irgsp1_rep	three_prime_UTR	18619296	18619651	.	+	.	Parent=Os07t0496700-01
Chr07	irgsp1_rep	mRNA	18621386	18624545	.	+	.	ID=Os07t0496900-01;Name=Os07t0496900-01;Locus_id=Os07g0496900;Note=Conserved hypothetical protein.;Transcript_evidence=AK072937 (DDBJ%2C Best hit);ORF_evidence=B9FXD2 (UniProt);NIAS_FLcDNA=J033000A03;TENOR=Os07t0496900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	18621386	18621631	.	+	.	Parent=Os07t0496900-01
Chr07	irgsp1_rep	CDS	18621632	18622805	.	+	0	Parent=Os07t0496900-01
Chr07	irgsp1_rep	CDS	18623604	18623937	.	+	2	Parent=Os07t0496900-01
Chr07	irgsp1_rep	CDS	18624262	18624277	.	+	1	Parent=Os07t0496900-01
Chr07	irgsp1_rep	three_prime_UTR	18624278	18624545	.	+	.	Parent=Os07t0496900-01
Chr07	irgsp1_rep	mRNA	18621391	18624545	.	+	.	ID=Os07t0496900-02;Name=Os07t0496900-02;Locus_id=Os07g0496900;Note=Conserved hypothetical protein.;Transcript_evidence=AK067389 (DDBJ%2C Best hit);ORF_evidence=B9FXD2 (UniProt);NIAS_FLcDNA=J013101J10;TENOR=Os07t0496900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	18621391	18621631	.	+	.	Parent=Os07t0496900-02
Chr07	irgsp1_rep	CDS	18621632	18622805	.	+	0	Parent=Os07t0496900-02
Chr07	irgsp1_rep	CDS	18623604	18623935	.	+	2	Parent=Os07t0496900-02
Chr07	irgsp1_rep	CDS	18624320	18624358	.	+	0	Parent=Os07t0496900-02
Chr07	irgsp1_rep	three_prime_UTR	18624359	18624545	.	+	.	Parent=Os07t0496900-02
Chr07	irgsp1_rep	mRNA	18625486	18639333	.	-	.	ID=Os07t0497100-01;Name=Os07t0497100-01;Locus_id=Os07g0497100;RAP-DB Gene Symbol Synonym(s)=CHR729%2C OsCHR4%2C CRL6;RAP-DB Gene Name Synonym(s)=CHD-related gene 729%2C Chromatin Remodeling 4%2C crown rootless6;CGSNL Gene Symbol=RFS;CGSNL Gene Name=ROLLED FINE STRIPED LEAF;Oryzabase Gene Symbol Synonym(s)=rfs%2C cul7%2C OsRFS%2C OsCHR729%2C CHR729%2C CHR4%2C OsCHR4%2C CRL6%2C OsCRL%2C OsCHR4/CHR729%2C PKR1;Oryzabase Gene Name Synonym(s)=rolled fine striped leaf%2C curl leaf-7%2C Rolled Fine Striped%2C CHD-related gene 729%2C Chromatin Remodeling 4%2C crown rootless6%2C crown rootless 6%2C PICKLE RELATED1;Note=Chromodomain%2C helicase/ATPase%2C and DNA-binding domain (CHD) protein%2C Chromatin-remodeling factor%2C Mi-2-like protein%2C Crown root development%2C Chloroplast development in adaxial mesophyll%2C Maintenance of H3K4me3;Transcript_evidence=Inferred from literature;ORF_evidence=B9FXD3;GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C PHD-finger (IPR019787),Chromo domain-like (IPR016197),Chromo/Chromo shadow domain (IPR000953),Chromo domain (IPR023780),P-loop containing nucleoside triphosphate hydrolase (IPR027417),Helicase superfamily 1/2%2C ATP-binding domain (IPR014001),SNF2-related%2C N-terminal domain (IPR000330),Helicase%2C C-terminal (IPR001650),Domain of unknown function DUF1087 (IPR009463),Homeodomain-like (IPR009057),Myb-like domain (IPR017877),Zinc finger%2C PHD-type%2C conserved site (IPR019786);Manual Curation=April 27%2C 2016;Literature_PMID=27108205,26285801,22644768;Oryzabase=816;TENOR=Os07t0497100-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	18638946	18639333	.	-	.	Parent=Os07t0497100-01
Chr07	irgsp1_rep	five_prime_UTR	18637884	18637903	.	-	.	Parent=Os07t0497100-01
Chr07	irgsp1_rep	CDS	18637662	18637883	.	-	0	Parent=Os07t0497100-01
Chr07	irgsp1_rep	CDS	18636880	18636981	.	-	0	Parent=Os07t0497100-01
Chr07	irgsp1_rep	CDS	18636137	18636778	.	-	0	Parent=Os07t0497100-01
Chr07	irgsp1_rep	CDS	18635129	18635200	.	-	0	Parent=Os07t0497100-01
Chr07	irgsp1_rep	CDS	18632252	18634951	.	-	0	Parent=Os07t0497100-01
Chr07	irgsp1_rep	CDS	18631758	18631912	.	-	0	Parent=Os07t0497100-01
Chr07	irgsp1_rep	CDS	18630923	18631037	.	-	1	Parent=Os07t0497100-01
Chr07	irgsp1_rep	CDS	18628883	18628950	.	-	0	Parent=Os07t0497100-01
Chr07	irgsp1_rep	CDS	18628170	18628764	.	-	1	Parent=Os07t0497100-01
Chr07	irgsp1_rep	CDS	18625785	18627893	.	-	0	Parent=Os07t0497100-01
Chr07	irgsp1_rep	three_prime_UTR	18625486	18625784	.	-	.	Parent=Os07t0497100-01
Chr07	irgsp1_rep	mRNA	18643020	18653431	.	+	.	ID=Os07t0497400-01;Name=Os07t0497400-01;Locus_id=Os07g0497400;Note=Transglutaminase-like domain containing protein.;Transcript_evidence=AK068275 (DDBJ%2C Best hit);ORF_evidence=Q7F0R1 (UniProt);GO=Biological Process: nucleotide-excision repair (GO:0006289),Cellular Component: nucleus (GO:0005634),Molecular Function: damaged DNA binding (GO:0003684);InterPro=Transglutaminase-like (IPR002931),Rad4/PNGase transglutaminase-like fold (IPR018325);NIAS_FLcDNA=J013139F24;Expression=AK068275;TENOR=Os07t0497400-01;KEGG=Os07t0497400-01 (EC:3.5.1.52)
Chr07	irgsp1_rep	five_prime_UTR	18643020	18643151	.	+	.	Parent=Os07t0497400-01
Chr07	irgsp1_rep	CDS	18643152	18643307	.	+	0	Parent=Os07t0497400-01
Chr07	irgsp1_rep	CDS	18643468	18643644	.	+	0	Parent=Os07t0497400-01
Chr07	irgsp1_rep	CDS	18645789	18645890	.	+	0	Parent=Os07t0497400-01
Chr07	irgsp1_rep	CDS	18645991	18646077	.	+	0	Parent=Os07t0497400-01
Chr07	irgsp1_rep	CDS	18646769	18646851	.	+	0	Parent=Os07t0497400-01
Chr07	irgsp1_rep	CDS	18647556	18647669	.	+	1	Parent=Os07t0497400-01
Chr07	irgsp1_rep	CDS	18648760	18648814	.	+	1	Parent=Os07t0497400-01
Chr07	irgsp1_rep	CDS	18648916	18649002	.	+	0	Parent=Os07t0497400-01
Chr07	irgsp1_rep	CDS	18649712	18649767	.	+	0	Parent=Os07t0497400-01
Chr07	irgsp1_rep	CDS	18649854	18649913	.	+	1	Parent=Os07t0497400-01
Chr07	irgsp1_rep	CDS	18650021	18650108	.	+	1	Parent=Os07t0497400-01
Chr07	irgsp1_rep	CDS	18650213	18650436	.	+	0	Parent=Os07t0497400-01
Chr07	irgsp1_rep	CDS	18650775	18650829	.	+	1	Parent=Os07t0497400-01
Chr07	irgsp1_rep	three_prime_UTR	18650830	18650950	.	+	.	Parent=Os07t0497400-01
Chr07	irgsp1_rep	three_prime_UTR	18651030	18651090	.	+	.	Parent=Os07t0497400-01
Chr07	irgsp1_rep	three_prime_UTR	18651880	18651982	.	+	.	Parent=Os07t0497400-01
Chr07	irgsp1_rep	three_prime_UTR	18652759	18652890	.	+	.	Parent=Os07t0497400-01
Chr07	irgsp1_rep	three_prime_UTR	18652972	18653431	.	+	.	Parent=Os07t0497400-01
Chr07	irgsp1_rep	mRNA	18651946	18653433	.	+	.	ID=Os07t0497400-02;Name=Os07t0497400-02;Locus_id=Os07g0497400;Note=Similar to ATPNG1 (ARABIDOPSIS THALIANA PEPTIDE-N-GLYCANASE 1)%3B catalytic/ peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase.;Transcript_evidence=AK104953 (DDBJ%2C Best hit);ORF_evidence=NP_199768.1 (RefSeq);GO=Biological Process: cell adhesion (GO:0007155);InterPro=Coagulation factor 5/8 C-terminal type domain (IPR000421);NIAS_FLcDNA=001-110-H06;Expression=AK104953;TENOR=Os07t0497400-02;KEGG=Os07t0497400-02 (EC:3.5.1.52)
Chr07	irgsp1_rep	five_prime_UTR	18651946	18651947	.	+	.	Parent=Os07t0497400-02
Chr07	irgsp1_rep	CDS	18651948	18651982	.	+	0	Parent=Os07t0497400-02
Chr07	irgsp1_rep	CDS	18652759	18652890	.	+	1	Parent=Os07t0497400-02
Chr07	irgsp1_rep	CDS	18652972	18653056	.	+	1	Parent=Os07t0497400-02
Chr07	irgsp1_rep	three_prime_UTR	18653057	18653433	.	+	.	Parent=Os07t0497400-02
Chr07	irgsp1_rep	mRNA	18658755	18660353	.	-	.	ID=Os07t0497500-00;Name=Os07t0497500-00;Locus_id=Os07g0497500;Note=Similar to MYB transcription factor.;Transcript_evidence=BT038744 (DDBJ);ORF_evidence=Q71KV1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);TENOR=Os07t0497500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	18660318	18660353	.	-	.	Parent=Os07t0497500-00
Chr07	irgsp1_rep	CDS	18660188	18660317	.	-	0	Parent=Os07t0497500-00
Chr07	irgsp1_rep	CDS	18659932	18660061	.	-	2	Parent=Os07t0497500-00
Chr07	irgsp1_rep	CDS	18658755	18659697	.	-	1	Parent=Os07t0497500-00
Chr07	irgsp1_rep	mRNA	18684413	18684912	.	-	.	ID=Os07t0498150-00;Name=Os07t0498150-00;Locus_id=Os07g0498150;Note=Non-protein coding transcript.;Transcript_evidence=EU948238 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0498150-00
Chr07	irgsp1_rep	exon	18684413	18684912	.	-	.	Parent=Os07t0498150-00
Chr07	irgsp1_rep	mRNA	18684478	18687752	.	+	.	ID=Os07t0498300-01;Name=Os07t0498300-01;Locus_id=Os07g0498300;Note=Conserved hypothetical protein.;Transcript_evidence=AK059124 (DDBJ%2C Best hit);ORF_evidence=B8B6E0 (UniProt);NIAS_FLcDNA=001-022-F09;Expression=AK059124;TENOR=Os07t0498300-01;KEGG=Os07t0498300-01
Chr07	irgsp1_rep	five_prime_UTR	18684478	18684581	.	+	.	Parent=Os07t0498300-01
Chr07	irgsp1_rep	CDS	18684582	18684672	.	+	0	Parent=Os07t0498300-01
Chr07	irgsp1_rep	CDS	18685069	18685206	.	+	2	Parent=Os07t0498300-01
Chr07	irgsp1_rep	CDS	18687545	18687561	.	+	2	Parent=Os07t0498300-01
Chr07	irgsp1_rep	three_prime_UTR	18687562	18687752	.	+	.	Parent=Os07t0498300-01
Chr07	irgsp1_rep	mRNA	18684522	18687752	.	+	.	ID=Os07t0498300-02;Name=Os07t0498300-02;Locus_id=Os07g0498300;Note=Similar to cDNA clone:001-022-F09%2C full insert sequence.;Transcript_evidence=AK119800 (DDBJ%2C Best hit);ORF_evidence=B7E3F3 (UniProt);NIAS_FLcDNA=002-175-H09;TENOR=Os07t0498300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	18684522	18684672	.	+	.	Parent=Os07t0498300-02
Chr07	irgsp1_rep	five_prime_UTR	18685069	18685134	.	+	.	Parent=Os07t0498300-02
Chr07	irgsp1_rep	CDS	18685135	18685206	.	+	0	Parent=Os07t0498300-02
Chr07	irgsp1_rep	CDS	18687545	18687694	.	+	0	Parent=Os07t0498300-02
Chr07	irgsp1_rep	three_prime_UTR	18687695	18687752	.	+	.	Parent=Os07t0498300-02
Chr07	irgsp1_rep	mRNA	18688392	18692308	.	-	.	ID=Os07t0498400-00;Name=Os07t0498400-00;Locus_id=Os07g0498400;Note=Leucine-rich repeat%2C typical subtype domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001059710.2 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);Oryzabase=19673;TENOR=Os07t0498400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	18688837	18692308	.	-	0	Parent=Os07t0498400-00
Chr07	irgsp1_rep	CDS	18688392	18688747	.	-	2	Parent=Os07t0498400-00
Chr07	irgsp1_rep	mRNA	18719252	18725654	.	-	.	ID=Os07t0498800-01;Name=Os07t0498800-01;Locus_id=Os07g0498800;Oryzabase Gene Symbol Synonym(s)=CRTintP;Oryzabase Gene Name Synonym(s)=CRT interacting protein%2C calreticulin interacting protein;Note=Similar to Calreticulin interacted protein.;Transcript_evidence=AK072589 (DDBJ%2C Best hit);ORF_evidence=Q84UT7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin (IPR000626),Ubiquitin conserved site (IPR019954),Ubiquitin supergroup (IPR019955),Ubiquitin subgroup (IPR019956);NIAS_FLcDNA=J023132F22;Oryzabase=14052;TENOR=Os07t0498800-01
Chr07	irgsp1_rep	five_prime_UTR	18725362	18725654	.	-	.	Parent=Os07t0498800-01
Chr07	irgsp1_rep	five_prime_UTR	18724785	18724785	.	-	.	Parent=Os07t0498800-01
Chr07	irgsp1_rep	CDS	18724656	18724784	.	-	0	Parent=Os07t0498800-01
Chr07	irgsp1_rep	CDS	18724361	18724478	.	-	0	Parent=Os07t0498800-01
Chr07	irgsp1_rep	CDS	18723701	18723799	.	-	2	Parent=Os07t0498800-01
Chr07	irgsp1_rep	CDS	18723116	18723156	.	-	2	Parent=Os07t0498800-01
Chr07	irgsp1_rep	CDS	18722945	18722995	.	-	0	Parent=Os07t0498800-01
Chr07	irgsp1_rep	CDS	18722778	18722846	.	-	0	Parent=Os07t0498800-01
Chr07	irgsp1_rep	CDS	18722554	18722700	.	-	0	Parent=Os07t0498800-01
Chr07	irgsp1_rep	CDS	18722409	18722478	.	-	0	Parent=Os07t0498800-01
Chr07	irgsp1_rep	CDS	18722183	18722331	.	-	2	Parent=Os07t0498800-01
Chr07	irgsp1_rep	CDS	18721059	18721223	.	-	0	Parent=Os07t0498800-01
Chr07	irgsp1_rep	CDS	18720905	18720976	.	-	0	Parent=Os07t0498800-01
Chr07	irgsp1_rep	CDS	18720707	18720821	.	-	0	Parent=Os07t0498800-01
Chr07	irgsp1_rep	CDS	18719571	18720134	.	-	2	Parent=Os07t0498800-01
Chr07	irgsp1_rep	CDS	18719252	18719473	.	-	2	Parent=Os07t0498800-01
Chr07	irgsp1_rep	mRNA	18717181	18725654	.	-	.	ID=Os07t0498800-02;Name=Os07t0498800-02;Locus_id=Os07g0498800;Oryzabase Gene Symbol Synonym(s)=CRTintP;Oryzabase Gene Name Synonym(s)=CRT interacting protein%2C calreticulin interacting protein;Note=Similar to Calreticulin interacted protein.;Transcript_evidence=AK065220 (DDBJ%2C Best hit);ORF_evidence=Q84UT7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin (IPR000626),Ubiquitin conserved site (IPR019954),Ubiquitin supergroup (IPR019955),Ubiquitin subgroup (IPR019956);NIAS_FLcDNA=J013002G13;Oryzabase=14052;Expression=AK065220;TENOR=Os07t0498800-02;KEGG=Os07t0498800-02
Chr07	irgsp1_rep	five_prime_UTR	18725362	18725654	.	-	.	Parent=Os07t0498800-02
Chr07	irgsp1_rep	five_prime_UTR	18724785	18724785	.	-	.	Parent=Os07t0498800-02
Chr07	irgsp1_rep	CDS	18724656	18724784	.	-	0	Parent=Os07t0498800-02
Chr07	irgsp1_rep	CDS	18724361	18724478	.	-	0	Parent=Os07t0498800-02
Chr07	irgsp1_rep	CDS	18723701	18723799	.	-	2	Parent=Os07t0498800-02
Chr07	irgsp1_rep	CDS	18723104	18723156	.	-	2	Parent=Os07t0498800-02
Chr07	irgsp1_rep	three_prime_UTR	18722945	18723103	.	-	.	Parent=Os07t0498800-02
Chr07	irgsp1_rep	three_prime_UTR	18722778	18722846	.	-	.	Parent=Os07t0498800-02
Chr07	irgsp1_rep	three_prime_UTR	18722554	18722700	.	-	.	Parent=Os07t0498800-02
Chr07	irgsp1_rep	three_prime_UTR	18722409	18722478	.	-	.	Parent=Os07t0498800-02
Chr07	irgsp1_rep	three_prime_UTR	18722183	18722331	.	-	.	Parent=Os07t0498800-02
Chr07	irgsp1_rep	three_prime_UTR	18721059	18721223	.	-	.	Parent=Os07t0498800-02
Chr07	irgsp1_rep	three_prime_UTR	18720905	18720976	.	-	.	Parent=Os07t0498800-02
Chr07	irgsp1_rep	three_prime_UTR	18720707	18720821	.	-	.	Parent=Os07t0498800-02
Chr07	irgsp1_rep	three_prime_UTR	18719571	18720134	.	-	.	Parent=Os07t0498800-02
Chr07	irgsp1_rep	three_prime_UTR	18719145	18719473	.	-	.	Parent=Os07t0498800-02
Chr07	irgsp1_rep	three_prime_UTR	18718272	18718874	.	-	.	Parent=Os07t0498800-02
Chr07	irgsp1_rep	three_prime_UTR	18717865	18718020	.	-	.	Parent=Os07t0498800-02
Chr07	irgsp1_rep	three_prime_UTR	18717181	18717543	.	-	.	Parent=Os07t0498800-02
Chr07	irgsp1_rep	mRNA	18727988	18733552	.	+	.	ID=Os07t0498900-01;Name=Os07t0498900-01;Locus_id=Os07g0498900;Oryzabase Gene Symbol Synonym(s)=OsTBL37%2C TBL37;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 37;Note=Protein of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=AK073263 (DDBJ%2C Best hit);ORF_evidence=A2YLK2 (UniProt);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=J033024K20;Oryzabase=21492;Expression=AK073263;TENOR=Os07t0498900-01;KEGG=Os07t0498900-01
Chr07	irgsp1_rep	five_prime_UTR	18727988	18728043	.	+	.	Parent=Os07t0498900-01
Chr07	irgsp1_rep	CDS	18728044	18728452	.	+	0	Parent=Os07t0498900-01
Chr07	irgsp1_rep	CDS	18728922	18729099	.	+	2	Parent=Os07t0498900-01
Chr07	irgsp1_rep	CDS	18729511	18729651	.	+	1	Parent=Os07t0498900-01
Chr07	irgsp1_rep	CDS	18731315	18731435	.	+	1	Parent=Os07t0498900-01
Chr07	irgsp1_rep	CDS	18732149	18732283	.	+	0	Parent=Os07t0498900-01
Chr07	irgsp1_rep	CDS	18732959	18733216	.	+	0	Parent=Os07t0498900-01
Chr07	irgsp1_rep	three_prime_UTR	18733217	18733552	.	+	.	Parent=Os07t0498900-01
Chr07	irgsp1_rep	mRNA	18761288	18762653	.	+	.	ID=Os07t0499300-01;Name=Os07t0499300-01;Locus_id=Os07g0499300;Note=Similar to predicted protein.;Transcript_evidence=AK061219 (DDBJ%2C Best hit);ORF_evidence=NP_196024.1 (RefSeq);NIAS_FLcDNA=006-210-E09;Expression=AK061219;TENOR=Os07t0499300-01;KEGG=Os07t0499300-01
Chr07	irgsp1_rep	CDS	18761288	18761893	.	+	0	Parent=Os07t0499300-01
Chr07	irgsp1_rep	three_prime_UTR	18761894	18762653	.	+	.	Parent=Os07t0499300-01
Chr07	irgsp1_rep	mRNA	18762005	18763654	.	+	.	ID=Os07t0499300-02;Name=Os07t0499300-02;Locus_id=Os07g0499300;Note=Conserved hypothetical protein.;Transcript_evidence=AK060056 (DDBJ%2C Best hit);ORF_evidence=B8B6E3 (UniProt);NIAS_FLcDNA=006-305-E08;Expression=AK060056;TENOR=Os07t0499300-02;KEGG=Os07t0499300-02
Chr07	irgsp1_rep	five_prime_UTR	18762005	18762387	.	+	.	Parent=Os07t0499300-02
Chr07	irgsp1_rep	CDS	18762388	18762429	.	+	0	Parent=Os07t0499300-02
Chr07	irgsp1_rep	CDS	18763217	18763417	.	+	0	Parent=Os07t0499300-02
Chr07	irgsp1_rep	three_prime_UTR	18763418	18763654	.	+	.	Parent=Os07t0499300-02
Chr07	irgsp1_rep	mRNA	18765673	18767140	.	+	.	ID=Os07t0499500-01;Name=Os07t0499500-01;Locus_id=Os07g0499500;Oryzabase Gene Symbol Synonym(s)=prx102;Oryzabase Gene Name Synonym(s)=class III peroxidase 102;Note=Similar to Peroxidase 7 precursor (EC 1.11.1.7) (Atperox P7) (ATP30).;Transcript_evidence=AK108797 (DDBJ%2C Best hit);ORF_evidence=Q5U1J1 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793);NIAS_FLcDNA=002-151-C03;Oryzabase=14624;Expression=AK108797;TENOR=Os07t0499500-01;KEGG=Os07t0499500-01 (EC:1.11.1.7)
Chr07	irgsp1_rep	five_prime_UTR	18765673	18765723	.	+	.	Parent=Os07t0499500-01
Chr07	irgsp1_rep	CDS	18765724	18766008	.	+	0	Parent=Os07t0499500-01
Chr07	irgsp1_rep	CDS	18766120	18766297	.	+	0	Parent=Os07t0499500-01
Chr07	irgsp1_rep	CDS	18766389	18766975	.	+	2	Parent=Os07t0499500-01
Chr07	irgsp1_rep	three_prime_UTR	18766976	18767140	.	+	.	Parent=Os07t0499500-01
Chr07	irgsp1_rep	mRNA	18765770	18766940	.	-	.	ID=Os07t0499650-00;Name=Os07t0499650-00;Locus_id=Os07g0499650;Note=Hypothetical protein.;Transcript_evidence=tplb0038a01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0499650-00
Chr07	irgsp1_rep	five_prime_UTR	18766940	18766940	.	-	.	Parent=Os07t0499650-00
Chr07	irgsp1_rep	CDS	18766403	18766939	.	-	0	Parent=Os07t0499650-00
Chr07	irgsp1_rep	CDS	18766214	18766309	.	-	0	Parent=Os07t0499650-00
Chr07	irgsp1_rep	three_prime_UTR	18766147	18766213	.	-	.	Parent=Os07t0499650-00
Chr07	irgsp1_rep	three_prime_UTR	18765770	18766048	.	-	.	Parent=Os07t0499650-00
Chr07	irgsp1_rep	mRNA	18800968	18806189	.	+	.	ID=Os07t0499800-01;Name=Os07t0499800-01;Locus_id=Os07g0499800;Oryzabase Gene Symbol Synonym(s)=OsRFP;Oryzabase Gene Name Synonym(s)=RING finger protein;Note=Ubiquitin-protein ligase E3 MDM2 domain containing protein.;Transcript_evidence=AK120716 (DDBJ%2C Best hit);ORF_evidence=Q69RQ6 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J023002C10;Oryzabase=21167;Expression=AK120716;TENOR=Os07t0499800-01;KEGG=Os07t0499800-01
Chr07	irgsp1_rep	five_prime_UTR	18800968	18801005	.	+	.	Parent=Os07t0499800-01
Chr07	irgsp1_rep	CDS	18801006	18801935	.	+	0	Parent=Os07t0499800-01
Chr07	irgsp1_rep	CDS	18803256	18803374	.	+	0	Parent=Os07t0499800-01
Chr07	irgsp1_rep	CDS	18803598	18804176	.	+	1	Parent=Os07t0499800-01
Chr07	irgsp1_rep	CDS	18804398	18804674	.	+	1	Parent=Os07t0499800-01
Chr07	irgsp1_rep	CDS	18804742	18804889	.	+	0	Parent=Os07t0499800-01
Chr07	irgsp1_rep	CDS	18805536	18805623	.	+	2	Parent=Os07t0499800-01
Chr07	irgsp1_rep	CDS	18805746	18805863	.	+	1	Parent=Os07t0499800-01
Chr07	irgsp1_rep	three_prime_UTR	18805864	18806189	.	+	.	Parent=Os07t0499800-01
Chr07	irgsp1_rep	mRNA	18812310	18813757	.	-	.	ID=Os07t0499900-01;Name=Os07t0499900-01;Locus_id=Os07g0499900;Oryzabase Gene Symbol Synonym(s)=OsFbox373%2C Os_F0163;Oryzabase Gene Name Synonym(s)=F-box protein 373;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK109745 (DDBJ%2C Best hit);ORF_evidence=A3BK22 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-146-F01;Oryzabase=17148;Expression=AK109745;TENOR=Os07t0499900-01;KEGG=Os07t0499900-01
Chr07	irgsp1_rep	five_prime_UTR	18813711	18813757	.	-	.	Parent=Os07t0499900-01
Chr07	irgsp1_rep	CDS	18812346	18813710	.	-	0	Parent=Os07t0499900-01
Chr07	irgsp1_rep	three_prime_UTR	18812310	18812345	.	-	.	Parent=Os07t0499900-01
Chr07	irgsp1_rep	mRNA	18840251	18842537	.	+	.	ID=Os07t0500300-01;Name=Os07t0500300-01;Locus_id=Os07g0500300;RAP-DB Gene Symbol Synonym(s)=OsGAP;RAP-DB Gene Name Synonym(s)=GTPase activating protein;Oryzabase Gene Symbol Synonym(s)=OsGAP%2C GAP;Oryzabase Gene Name Synonym(s)=GTPase activating protein;Note=C2-domain abscisic acid-related protein%2C CAR protein%2C Regulation of ABA signaling in seed germination;Transcript_evidence=AK120268,AK061939;ORF_evidence=Q69RN2;InterPro=C2 domain superfamily (IPR035892),C2 domain (IPR000008);NIAS_FLcDNA=J013047I20,001-042-D08;Manual Curation=September 26%2C 2019;Literature_PMID=31436865;Oryzabase=23334;TENOR=Os07t0500300-01;Subcellular location=cytoplasm (GO:0005737), nucleus (GO:0005634)
Chr07	irgsp1_rep	five_prime_UTR	18840251	18840310	.	+	.	Parent=Os07t0500300-01
Chr07	irgsp1_rep	CDS	18840311	18840448	.	+	0	Parent=Os07t0500300-01
Chr07	irgsp1_rep	CDS	18841627	18841722	.	+	0	Parent=Os07t0500300-01
Chr07	irgsp1_rep	CDS	18841880	18842167	.	+	0	Parent=Os07t0500300-01
Chr07	irgsp1_rep	three_prime_UTR	18842168	18842537	.	+	.	Parent=Os07t0500300-01
Chr07	irgsp1_rep	mRNA	18852472	18852930	.	-	.	ID=Os07t0500800-00;Name=Os07t0500800-00;Locus_id=Os07g0500800;CGSNL Gene Symbol=PKS11;CGSNL Gene Name=POLYKETIDE SYNTHASE 11;Oryzabase Gene Symbol Synonym(s)=OsPKS11%2C OsCHS11%2C CHS11;Oryzabase Gene Name Synonym(s)=polyketide synthase 11%2C Chalcone synthase 11;Note=Similar to Chalcone synthase.;Transcript_evidence=ab initio prediction;ORF_evidence=A7KTI3 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Chalcone/stilbene synthase%2C C-terminal (IPR012328),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);Oryzabase=21560;TENOR=Os07t0500800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	18852472	18852930	.	-	0	Parent=Os07t0500800-00
Chr07	irgsp1_rep	mRNA	18852588	18853503	.	+	.	ID=Os07t0500951-00;Name=Os07t0500951-00;Locus_id=Os07g0500951;Note=Hypothetical gene.;Transcript_evidence=EU966441 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0500951-00;KEGG=Os07t0500951-00
Chr07	irgsp1_rep	five_prime_UTR	18852588	18853008	.	+	.	Parent=Os07t0500951-00
Chr07	irgsp1_rep	CDS	18853009	18853497	.	+	0	Parent=Os07t0500951-00
Chr07	irgsp1_rep	three_prime_UTR	18853498	18853503	.	+	.	Parent=Os07t0500951-00
Chr07	irgsp1_rep	mRNA	18873790	18875926	.	-	.	ID=Os07t0501100-01;Name=Os07t0501100-01;Locus_id=Os07g0501100;Oryzabase Gene Symbol Synonym(s)=CHS%2C OsPKS12%2C PKS12%2C OsCHS12%2C CHS12;Oryzabase Gene Name Synonym(s)=Chalcone synthase%2C polyketide synthase 12%2C Chalcone synthase 12;Note=Similar to Chalcone synthase 2 (EC 2.3.1.74) (Naringenin-chalcone synthase 2).;Transcript_evidence=AK110924 (DDBJ%2C Best hit);ORF_evidence=A2ZEX7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Chalcone/stilbene synthase%2C N-terminal (IPR001099),Polyketide synthase%2C type III (IPR011141),Chalcone/stilbene synthase%2C C-terminal (IPR012328),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);NIAS_FLcDNA=002-173-D05;Oryzabase=16780;Expression=AK110924;TENOR=Os07t0501100-01;KEGG=Os07t0501100-01 (EC:2.3.1.74)
Chr07	irgsp1_rep	five_prime_UTR	18875762	18875926	.	-	.	Parent=Os07t0501100-01
Chr07	irgsp1_rep	CDS	18875539	18875761	.	-	0	Parent=Os07t0501100-01
Chr07	irgsp1_rep	CDS	18874133	18875127	.	-	2	Parent=Os07t0501100-01
Chr07	irgsp1_rep	three_prime_UTR	18873790	18874132	.	-	.	Parent=Os07t0501100-01
Chr07	irgsp1_rep	mRNA	18874249	18875144	.	+	.	ID=Os07t0501133-00;Name=Os07t0501133-00;Locus_id=Os07g0501133;Note=Hypothetical gene.;Transcript_evidence=EU966441 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0501133-00;KEGG=Os07t0501133-00
Chr07	irgsp1_rep	five_prime_UTR	18874249	18874249	.	+	.	Parent=Os07t0501133-00
Chr07	irgsp1_rep	CDS	18874250	18875038	.	+	0	Parent=Os07t0501133-00
Chr07	irgsp1_rep	three_prime_UTR	18875039	18875144	.	+	.	Parent=Os07t0501133-00
Chr07	irgsp1_rep	mRNA	18893442	18894788	.	+	.	ID=Os07t0501400-00;Name=Os07t0501400-00;Locus_id=Os07g0501400;Note=Hypothetical conserved gene.;Transcript_evidence=EU970751 (DDBJ);ORF_evidence=Q6ZIJ0 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Alpha/beta hydrolase fold-3 (IPR013094);TENOR=Os07t0501400-00;KEGG=Os07t0501400-00
Chr07	irgsp1_rep	CDS	18893442	18894788	.	+	0	Parent=Os07t0501400-00
Chr07	irgsp1_rep	mRNA	18901295	18906770	.	-	.	ID=Os07t0501600-00;Name=Os07t0501600-00;Locus_id=Os07g0501600;Note=Conserved hypothetical protein.;Transcript_evidence=EU968706 (DDBJ);ORF_evidence=Q6ZII8 (UniProt);TENOR=Os07t0501600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	18906520	18906770	.	-	0	Parent=Os07t0501600-00
Chr07	irgsp1_rep	CDS	18901354	18901462	.	-	1	Parent=Os07t0501600-00
Chr07	irgsp1_rep	three_prime_UTR	18901295	18901353	.	-	.	Parent=Os07t0501600-00
Chr07	irgsp1_rep	mRNA	18911787	18914891	.	+	.	ID=Os07t0501700-01;Name=Os07t0501700-01;Locus_id=Os07g0501700;Oryzabase Gene Symbol Synonym(s)=OsSTA196;Note=C2 calcium-dependent membrane targeting domain containing protein.;Transcript_evidence=AK070911 (DDBJ%2C Best hit);ORF_evidence=NP_001148249.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=J023068D10;Oryzabase=19474;Expression=AK070911;TENOR=Os07t0501700-01;KEGG=Os07t0501700-01
Chr07	irgsp1_rep	five_prime_UTR	18911787	18911984	.	+	.	Parent=Os07t0501700-01
Chr07	irgsp1_rep	CDS	18911985	18912101	.	+	0	Parent=Os07t0501700-01
Chr07	irgsp1_rep	CDS	18913439	18913534	.	+	0	Parent=Os07t0501700-01
Chr07	irgsp1_rep	CDS	18914339	18914626	.	+	0	Parent=Os07t0501700-01
Chr07	irgsp1_rep	three_prime_UTR	18914627	18914891	.	+	.	Parent=Os07t0501700-01
Chr07	irgsp1_rep	mRNA	18914954	18920460	.	-	.	ID=Os07t0501800-01;Name=Os07t0501800-01;Locus_id=Os07g0501800;Note=Similar to Receptor-like protein kinase.;Transcript_evidence=AK102299 (DDBJ%2C Best hit);ORF_evidence=NP_174156.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Malectin-like carbohydrate-binding domain (IPR024788);NIAS_FLcDNA=J033089L20;Expression=AK102299;TENOR=Os07t0501800-01;KEGG=Os07t0501800-01
Chr07	irgsp1_rep	five_prime_UTR	18920342	18920460	.	-	.	Parent=Os07t0501800-01
Chr07	irgsp1_rep	CDS	18920242	18920341	.	-	0	Parent=Os07t0501800-01
Chr07	irgsp1_rep	CDS	18918443	18919501	.	-	2	Parent=Os07t0501800-01
Chr07	irgsp1_rep	CDS	18917950	18918097	.	-	2	Parent=Os07t0501800-01
Chr07	irgsp1_rep	CDS	18917175	18917246	.	-	1	Parent=Os07t0501800-01
Chr07	irgsp1_rep	CDS	18916742	18916813	.	-	1	Parent=Os07t0501800-01
Chr07	irgsp1_rep	CDS	18916121	18916192	.	-	1	Parent=Os07t0501800-01
Chr07	irgsp1_rep	CDS	18915957	18916034	.	-	1	Parent=Os07t0501800-01
Chr07	irgsp1_rep	CDS	18915596	18915780	.	-	1	Parent=Os07t0501800-01
Chr07	irgsp1_rep	CDS	18915366	18915496	.	-	2	Parent=Os07t0501800-01
Chr07	irgsp1_rep	three_prime_UTR	18914954	18915365	.	-	.	Parent=Os07t0501800-01
Chr07	irgsp1_rep	mRNA	18925430	18931500	.	-	.	ID=Os07t0501900-01;Name=Os07t0501900-01;Locus_id=Os07g0501900;Note=Similar to predicted protein.;Transcript_evidence=AK120759 (DDBJ%2C Best hit);ORF_evidence=XP_002886295.1 (RefSeq);NIAS_FLcDNA=J023007F07;TENOR=Os07t0501900-01
Chr07	irgsp1_rep	five_prime_UTR	18931240	18931500	.	-	.	Parent=Os07t0501900-01
Chr07	irgsp1_rep	CDS	18931051	18931239	.	-	0	Parent=Os07t0501900-01
Chr07	irgsp1_rep	CDS	18930362	18930431	.	-	0	Parent=Os07t0501900-01
Chr07	irgsp1_rep	CDS	18929308	18929435	.	-	2	Parent=Os07t0501900-01
Chr07	irgsp1_rep	CDS	18928783	18928898	.	-	0	Parent=Os07t0501900-01
Chr07	irgsp1_rep	CDS	18928281	18928341	.	-	1	Parent=Os07t0501900-01
Chr07	irgsp1_rep	CDS	18928000	18928063	.	-	0	Parent=Os07t0501900-01
Chr07	irgsp1_rep	CDS	18927845	18927922	.	-	2	Parent=Os07t0501900-01
Chr07	irgsp1_rep	CDS	18927520	18927677	.	-	2	Parent=Os07t0501900-01
Chr07	irgsp1_rep	CDS	18927370	18927429	.	-	0	Parent=Os07t0501900-01
Chr07	irgsp1_rep	CDS	18927171	18927264	.	-	0	Parent=Os07t0501900-01
Chr07	irgsp1_rep	CDS	18926283	18926450	.	-	2	Parent=Os07t0501900-01
Chr07	irgsp1_rep	CDS	18925430	18925699	.	-	2	Parent=Os07t0501900-01
Chr07	irgsp1_rep	mRNA	18924529	18931468	.	-	.	ID=Os07t0501900-02;Name=Os07t0501900-02;Locus_id=Os07g0501900;Note=Similar to zinc finger family protein.;Transcript_evidence=AK120945 (DDBJ%2C Best hit);ORF_evidence=XP_002886295.1 (RefSeq);NIAS_FLcDNA=J023037N03;TENOR=Os07t0501900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	18931240	18931468	.	-	.	Parent=Os07t0501900-02
Chr07	irgsp1_rep	CDS	18931051	18931239	.	-	0	Parent=Os07t0501900-02
Chr07	irgsp1_rep	CDS	18930362	18930431	.	-	0	Parent=Os07t0501900-02
Chr07	irgsp1_rep	CDS	18929308	18929435	.	-	2	Parent=Os07t0501900-02
Chr07	irgsp1_rep	CDS	18928783	18928898	.	-	0	Parent=Os07t0501900-02
Chr07	irgsp1_rep	CDS	18928281	18928341	.	-	1	Parent=Os07t0501900-02
Chr07	irgsp1_rep	CDS	18928000	18928063	.	-	0	Parent=Os07t0501900-02
Chr07	irgsp1_rep	CDS	18927845	18927922	.	-	2	Parent=Os07t0501900-02
Chr07	irgsp1_rep	CDS	18927520	18927677	.	-	2	Parent=Os07t0501900-02
Chr07	irgsp1_rep	CDS	18927341	18927429	.	-	0	Parent=Os07t0501900-02
Chr07	irgsp1_rep	CDS	18927240	18927264	.	-	1	Parent=Os07t0501900-02
Chr07	irgsp1_rep	three_prime_UTR	18927171	18927239	.	-	.	Parent=Os07t0501900-02
Chr07	irgsp1_rep	three_prime_UTR	18926283	18926450	.	-	.	Parent=Os07t0501900-02
Chr07	irgsp1_rep	three_prime_UTR	18925371	18925699	.	-	.	Parent=Os07t0501900-02
Chr07	irgsp1_rep	three_prime_UTR	18925023	18925139	.	-	.	Parent=Os07t0501900-02
Chr07	irgsp1_rep	three_prime_UTR	18924784	18924940	.	-	.	Parent=Os07t0501900-02
Chr07	irgsp1_rep	three_prime_UTR	18924529	18924690	.	-	.	Parent=Os07t0501900-02
Chr07	irgsp1_rep	mRNA	18925430	18931132	.	-	.	ID=Os07t0501900-03;Name=Os07t0501900-03;Locus_id=Os07g0501900;Note=Similar to zinc finger family protein.;Transcript_evidence=AK067791 (DDBJ%2C Best hit);ORF_evidence=XP_002886295.1 (RefSeq);NIAS_FLcDNA=J013120P18;TENOR=Os07t0501900-03
Chr07	irgsp1_rep	five_prime_UTR	18931132	18931132	.	-	.	Parent=Os07t0501900-03
Chr07	irgsp1_rep	CDS	18931051	18931131	.	-	0	Parent=Os07t0501900-03
Chr07	irgsp1_rep	CDS	18930362	18930431	.	-	0	Parent=Os07t0501900-03
Chr07	irgsp1_rep	CDS	18929308	18929435	.	-	2	Parent=Os07t0501900-03
Chr07	irgsp1_rep	CDS	18928783	18928898	.	-	0	Parent=Os07t0501900-03
Chr07	irgsp1_rep	CDS	18928281	18928341	.	-	1	Parent=Os07t0501900-03
Chr07	irgsp1_rep	CDS	18928000	18928063	.	-	0	Parent=Os07t0501900-03
Chr07	irgsp1_rep	CDS	18927845	18927922	.	-	2	Parent=Os07t0501900-03
Chr07	irgsp1_rep	CDS	18927520	18927677	.	-	2	Parent=Os07t0501900-03
Chr07	irgsp1_rep	CDS	18927370	18927429	.	-	0	Parent=Os07t0501900-03
Chr07	irgsp1_rep	CDS	18927171	18927264	.	-	0	Parent=Os07t0501900-03
Chr07	irgsp1_rep	CDS	18926283	18926450	.	-	2	Parent=Os07t0501900-03
Chr07	irgsp1_rep	CDS	18925430	18925699	.	-	2	Parent=Os07t0501900-03
Chr07	irgsp1_rep	mRNA	18956816	18963021	.	-	.	ID=Os07t0502200-01;Name=Os07t0502200-01;Locus_id=Os07g0502200;Note=Multi antimicrobial extrusion protein MatE family protein.;Transcript_evidence=AK120682 (DDBJ%2C Best hit);ORF_evidence=NP_001147516.1 (RefSeq);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);NIAS_FLcDNA=J013163C05;Expression=AK120682;TENOR=Os07t0502200-01;KEGG=Os07t0502200-01
Chr07	irgsp1_rep	five_prime_UTR	18962927	18963021	.	-	.	Parent=Os07t0502200-01
Chr07	irgsp1_rep	CDS	18962654	18962926	.	-	0	Parent=Os07t0502200-01
Chr07	irgsp1_rep	CDS	18957916	18958460	.	-	0	Parent=Os07t0502200-01
Chr07	irgsp1_rep	CDS	18957730	18957816	.	-	1	Parent=Os07t0502200-01
Chr07	irgsp1_rep	CDS	18957591	18957647	.	-	1	Parent=Os07t0502200-01
Chr07	irgsp1_rep	CDS	18957126	18957483	.	-	1	Parent=Os07t0502200-01
Chr07	irgsp1_rep	CDS	18956894	18957022	.	-	0	Parent=Os07t0502200-01
Chr07	irgsp1_rep	three_prime_UTR	18956816	18956893	.	-	.	Parent=Os07t0502200-01
Chr07	irgsp1_rep	mRNA	18957916	18963016	.	+	.	ID=Os07t0502550-00;Name=Os07t0502550-00;Locus_id=Os07g0502550;Note=Hypothetical protein.;Transcript_evidence=tplb0057a08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0502550-00
Chr07	irgsp1_rep	five_prime_UTR	18957916	18957917	.	+	.	Parent=Os07t0502550-00
Chr07	irgsp1_rep	CDS	18957918	18958458	.	+	0	Parent=Os07t0502550-00
Chr07	irgsp1_rep	CDS	18962661	18963016	.	+	2	Parent=Os07t0502550-00
Chr07	irgsp1_rep	mRNA	19008024	19009668	.	-	.	ID=Os07t0502900-00;Name=Os07t0502900-00;Locus_id=Os07g0502900;CGSNL Gene Symbol=UGT707A4;CGSNL Gene Name=UDP-DEPENDENT GLYCOSYLTRANSFERASE 707A4;Oryzabase Gene Symbol Synonym(s)=OsUGT707A4;Oryzabase Gene Name Synonym(s)=UDP-dependent glycosyltransferase 707A4;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK353642 (DDBJ);ORF_evidence=NP_001148465.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);Oryzabase=22212;TENOR=Os07t0502900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	19008094	19009668	.	-	0	Parent=Os07t0502900-00
Chr07	irgsp1_rep	three_prime_UTR	19008024	19008093	.	-	.	Parent=Os07t0502900-00
Chr07	irgsp1_rep	mRNA	19037824	19039570	.	-	.	ID=Os07t0503200-01;Name=Os07t0503200-01;Locus_id=Os07g0503200;Note=Hypothetical protein.;Transcript_evidence=AK064324 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-107-F04;Expression=AK064324;TENOR=Os07t0503200-01;KEGG=Os07t0503200-01
Chr07	irgsp1_rep	five_prime_UTR	19039198	19039570	.	-	.	Parent=Os07t0503200-01
Chr07	irgsp1_rep	CDS	19038544	19039197	.	-	0	Parent=Os07t0503200-01
Chr07	irgsp1_rep	three_prime_UTR	19037824	19038543	.	-	.	Parent=Os07t0503200-01
Chr07	irgsp1_rep	mRNA	19037737	19039523	.	-	.	ID=Os07t0503200-02;Name=Os07t0503200-02;Locus_id=Os07g0503200;Note=Hypothetical protein.;Transcript_evidence=AK101518 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033046I03;Expression=AK101518;TENOR=Os07t0503200-02;KEGG=Os07t0503200-02
Chr07	irgsp1_rep	five_prime_UTR	19039198	19039523	.	-	.	Parent=Os07t0503200-02
Chr07	irgsp1_rep	CDS	19038544	19039197	.	-	0	Parent=Os07t0503200-02
Chr07	irgsp1_rep	three_prime_UTR	19037737	19038543	.	-	.	Parent=Os07t0503200-02
Chr07	irgsp1_rep	mRNA	19037829	19039466	.	-	.	ID=Os07t0503200-03;Name=Os07t0503200-03;Locus_id=Os07g0503200;Note=Hypothetical protein.;Transcript_evidence=AK099344 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033028A15;Expression=AK099344;TENOR=Os07t0503200-03;KEGG=Os07t0503200-03
Chr07	irgsp1_rep	five_prime_UTR	19039198	19039466	.	-	.	Parent=Os07t0503200-03
Chr07	irgsp1_rep	CDS	19038544	19039197	.	-	0	Parent=Os07t0503200-03
Chr07	irgsp1_rep	three_prime_UTR	19037829	19038543	.	-	.	Parent=Os07t0503200-03
Chr07	irgsp1_rep	mRNA	19037891	19039599	.	+	.	ID=Os07t0503300-01;Name=Os07t0503300-01;Locus_id=Os07g0503300;CGSNL Gene Symbol=UGT707A5;CGSNL Gene Name=UDP-DEPENDENT GLYCOSYLTRANSFERASE 707A5;Oryzabase Gene Symbol Synonym(s)=OsUGT707A5;Oryzabase Gene Name Synonym(s)=UDP-dependent glycosyltransferase 707A5%2C anthocyanidin 3-O-glucosyltransferase 2;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK105785 (DDBJ%2C Best hit);ORF_evidence=NP_001148465.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=001-202-G10;Oryzabase=22211;Expression=AK105785;TENOR=Os07t0503300-01;KEGG=Os07t0503300-01 (EC:2.4.1.17)
Chr07	irgsp1_rep	five_prime_UTR	19037891	19037953	.	+	.	Parent=Os07t0503300-01
Chr07	irgsp1_rep	CDS	19037954	19039444	.	+	0	Parent=Os07t0503300-01
Chr07	irgsp1_rep	three_prime_UTR	19039445	19039599	.	+	.	Parent=Os07t0503300-01
Chr07	irgsp1_rep	mRNA	19037921	19039606	.	+	.	ID=Os07t0503300-02;Name=Os07t0503300-02;Locus_id=Os07g0503300;CGSNL Gene Symbol=UGT707A5;CGSNL Gene Name=UDP-DEPENDENT GLYCOSYLTRANSFERASE 707A5;Oryzabase Gene Symbol Synonym(s)=OsUGT707A5;Oryzabase Gene Name Synonym(s)=UDP-dependent glycosyltransferase 707A5%2C anthocyanidin 3-O-glucosyltransferase 2;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK106005 (DDBJ%2C Best hit);ORF_evidence=NP_001148465.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=001-206-A05;Oryzabase=22211;Expression=AK106005;TENOR=Os07t0503300-02;KEGG=Os07t0503300-02 (EC:2.4.1.17)
Chr07	irgsp1_rep	five_prime_UTR	19037921	19037953	.	+	.	Parent=Os07t0503300-02
Chr07	irgsp1_rep	CDS	19037954	19039444	.	+	0	Parent=Os07t0503300-02
Chr07	irgsp1_rep	three_prime_UTR	19039445	19039606	.	+	.	Parent=Os07t0503300-02
Chr07	irgsp1_rep	mRNA	19045831	19047331	.	+	.	ID=Os07t0503500-01;Name=Os07t0503500-01;Locus_id=Os07g0503500;CGSNL Gene Symbol=UGT707A3;CGSNL Gene Name=UDP-DEPENDENT GLUCOSYLTRANSFERASE 707A3;Oryzabase Gene Symbol Synonym(s)=OsUGT707A3;Oryzabase Gene Name Synonym(s)=UDP-dependent glucosyltransferase 707A3%2C UDP-dependent glycosyltransferase 707A3;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK059016 (DDBJ%2C Best hit);ORF_evidence=NP_001148465.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=001-021-A10;Oryzabase=18348;Expression=AK059016;TENOR=Os07t0503500-01;KEGG=Os07t0503500-01
Chr07	irgsp1_rep	five_prime_UTR	19045831	19045874	.	+	.	Parent=Os07t0503500-01
Chr07	irgsp1_rep	CDS	19045875	19047299	.	+	0	Parent=Os07t0503500-01
Chr07	irgsp1_rep	three_prime_UTR	19047300	19047331	.	+	.	Parent=Os07t0503500-01
Chr07	irgsp1_rep	mRNA	19045911	19047937	.	+	.	ID=Os07t0503500-02;Name=Os07t0503500-02;Locus_id=Os07g0503500;CGSNL Gene Symbol=UGT707A3;CGSNL Gene Name=UDP-DEPENDENT GLUCOSYLTRANSFERASE 707A3;Oryzabase Gene Symbol Synonym(s)=OsUGT707A3;Oryzabase Gene Name Synonym(s)=UDP-dependent glucosyltransferase 707A3%2C UDP-dependent glycosyltransferase 707A3;Note=UDP-glucuronosyl/UDP-glucosyltransferase domain containing protein.;Transcript_evidence=AK067710 (DDBJ%2C Best hit);ORF_evidence=Q6Z478 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J013120G17;Oryzabase=18348;TENOR=Os07t0503500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	19045911	19047299	.	+	0	Parent=Os07t0503500-02
Chr07	irgsp1_rep	three_prime_UTR	19047300	19047937	.	+	.	Parent=Os07t0503500-02
Chr07	irgsp1_rep	mRNA	19047543	19047805	.	-	.	ID=Os07t0503600-00;Name=Os07t0503600-00;Locus_id=Os07g0503600;Note=Similar to anthocyanidin 5%2C3-O-glucosyltransferase.;Transcript_evidence=CT829549 (DDBJ%2C Best hit);ORF_evidence=NP_001148983.1 (RefSeq);TENOR=Os07t0503600-00
Chr07	irgsp1_rep	five_prime_UTR	19047721	19047805	.	-	.	Parent=Os07t0503600-00
Chr07	irgsp1_rep	CDS	19047543	19047720	.	-	0	Parent=Os07t0503600-00
Chr07	irgsp1_rep	mRNA	19053629	19055955	.	+	.	ID=Os07t0503700-00;Name=Os07t0503700-00;Locus_id=Os07g0503700;Note=Similar to Eukaryotic initiation factor 3e.;Transcript_evidence=ab initio prediction;ORF_evidence=A0MLU6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Proteasome component (PCI) domain (IPR000717),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Translation initiation factor 3%2C subunit 6%2C eukaryotic (IPR016650),Eukaryotic translation initiation factor 3 (eIF3)%2C subunit 6%2C N-terminal (IPR019010);TENOR=Os07t0503700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	19053629	19054006	.	+	0	Parent=Os07t0503700-00
Chr07	irgsp1_rep	CDS	19054118	19054345	.	+	0	Parent=Os07t0503700-00
Chr07	irgsp1_rep	CDS	19054464	19054585	.	+	0	Parent=Os07t0503700-00
Chr07	irgsp1_rep	CDS	19054801	19055020	.	+	1	Parent=Os07t0503700-00
Chr07	irgsp1_rep	CDS	19055150	19055277	.	+	0	Parent=Os07t0503700-00
Chr07	irgsp1_rep	CDS	19055602	19055739	.	+	1	Parent=Os07t0503700-00
Chr07	irgsp1_rep	CDS	19055874	19055955	.	+	1	Parent=Os07t0503700-00
Chr07	irgsp1_rep	mRNA	19060762	19062546	.	+	.	ID=Os07t0503900-01;Name=Os07t0503900-01;Locus_id=Os07g0503900;RAP-DB Gene Symbol Synonym(s)=OsUGT707A2;RAP-DB Gene Name Synonym(s)=flavone 5-O-glucosyltransferase%2C UDP-dependent glycosyltransferase 707A2;CGSNL Gene Symbol=UGT707A2;CGSNL Gene Name=UDP-DEPENDENT GLYCOSYLTRANSFERASE 707A2;Oryzabase Gene Symbol Synonym(s)=UGT%2C OsUGT707A2;Oryzabase Gene Name Synonym(s)=UDP-glucosyl transferase%2C flavone 5-O-glucosyltransferase%2C UDP-dependent glycosyltransferase 707A2;Note=Flavone 5-O-glucosyltransferase%2C UV-B tolerance;Transcript_evidence=AK105261;ORF_evidence=Q6Z473;GO=Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213),UDP-glycosyltransferase family%2C conserved site (IPR035595);NIAS_FLcDNA=001-115-A09;Manual Curation=January 8%2C 2020;Literature_PMID=29213047,24908251;Oryzabase=18248;Expression=AK105261;TENOR=Os07t0503900-01;KEGG=Os07t0503900-01
Chr07	irgsp1_rep	five_prime_UTR	19060762	19060828	.	+	.	Parent=Os07t0503900-01
Chr07	irgsp1_rep	CDS	19060829	19062301	.	+	0	Parent=Os07t0503900-01
Chr07	irgsp1_rep	three_prime_UTR	19062302	19062546	.	+	.	Parent=Os07t0503900-01
Chr07	irgsp1_rep	mRNA	19067905	19069374	.	+	.	ID=Os07t0504200-00;Name=Os07t0504200-00;Locus_id=Os07g0504200;Note=Hypothetical conserved gene.;Transcript_evidence=tplb0012e01 (Wheat FLcDNA);ORF_evidence=Q6Z470 (UniProt);GO=Biological Process: transcription initiation%2C DNA-dependent (GO:0006352),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: translational initiation (GO:0006413),Molecular Function: translation initiation factor activity (GO:0003743),Molecular Function: zinc ion binding (GO:0008270);InterPro=Transcription factor TFIIB (IPR000812),Zinc finger%2C TFIIB-type (IPR013137),Transcription factor TFIIB%2C cyclin-related (IPR013150),Cyclin-like (IPR013763);TENOR=Os07t0504200-00;KEGG=Os07t0504200-00
Chr07	irgsp1_rep	CDS	19067905	19069374	.	+	0	Parent=Os07t0504200-00
Chr07	irgsp1_rep	mRNA	19083600	19084688	.	+	.	ID=Os07t0504500-00;Name=Os07t0504500-00;Locus_id=Os07g0504500;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6Z467 (UniProt);GO=Biological Process: transcription initiation%2C DNA-dependent (GO:0006352),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: translational initiation (GO:0006413),Molecular Function: translation initiation factor activity (GO:0003743),Molecular Function: zinc ion binding (GO:0008270);InterPro=Transcription factor TFIIB (IPR000812),Transcription factor TFIIB%2C cyclin-related (IPR013150),Cyclin-like (IPR013763);TENOR=Os07t0504500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	19083600	19084688	.	+	0	Parent=Os07t0504500-00
Chr07	irgsp1_rep	mRNA	19085626	19086219	.	-	.	ID=Os07t0504601-01;Name=Os07t0504601-01;Locus_id=Os07g0504601;Note=Conserved hypothetical protein.;Transcript_evidence=AK241124 (DDBJ%2C Best hit);ORF_evidence=NP_001175216.1 (RefSeq);NIAS_FLcDNA=J065095H08;TENOR=Os07t0504601-01;KEGG=Os07t0504601-01
Chr07	irgsp1_rep	five_prime_UTR	19086184	19086219	.	-	.	Parent=Os07t0504601-01
Chr07	irgsp1_rep	CDS	19085925	19086183	.	-	0	Parent=Os07t0504601-01
Chr07	irgsp1_rep	CDS	19085774	19085787	.	-	2	Parent=Os07t0504601-01
Chr07	irgsp1_rep	three_prime_UTR	19085626	19085773	.	-	.	Parent=Os07t0504601-01
Chr07	irgsp1_rep	mRNA	19092583	19094057	.	-	.	ID=Os07t0505101-00;Name=Os07t0505101-00;Locus_id=Os07g0505101;Note=Non-protein coding transcript.;Transcript_evidence=CT833679 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os07t0505101-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	exon	19093893	19094057	.	-	.	Parent=Os07t0505101-00
Chr07	irgsp1_rep	exon	19092583	19092800	.	-	.	Parent=Os07t0505101-00
Chr07	irgsp1_rep	mRNA	19099679	19103337	.	-	.	ID=Os07t0505200-01;Name=Os07t0505200-01;Locus_id=Os07g0505200;RAP-DB Gene Symbol Synonym(s)=GLW7%2C SPL13%2C OsSPL13;RAP-DB Gene Name Synonym(s)=GRAIN LENGTH AND WIEIGHT ON CHROMOSOME 7%2C RICE SQUAMOSA PROMOTER-BINDING-LIKE 13%2C Squamosa promoter-binding-like protein 13;CGSNL Gene Symbol=GLW7;CGSNL Gene Name=GRAIN LENGTH AND WEIGHT ON CHROMOSOME 7;Oryzabase Gene Symbol Synonym(s)=OsSPL13%2C SPL13;Oryzabase Gene Name Synonym(s)=Squamosa promoter-binding-like protein 13%2C RICE SQUAMOSA PROMOTER-BINDING-LIKE 13%2C GRAIN LENGTH AND WIEIGHT ON CHROMOSOME 7;Note=Plant-specific transcription factor%2C Control of grain size;Transcript_evidence=KT899581 (Dongjing);ORF_evidence=Q6Z461;GO=Molecular Function: DNA binding (GO:0003677),Cellular Component: nucleus (GO:0005634);InterPro=Transcription factor%2C SBP-box (IPR004333);Manual Curation=January 26%2C 2018;Literature_PMID=26950093,16861571;Oryzabase=6896
Chr07	irgsp1_rep	five_prime_UTR	19103107	19103337	.	-	.	Parent=Os07t0505200-01
Chr07	irgsp1_rep	CDS	19102640	19103106	.	-	0	Parent=Os07t0505200-01
Chr07	irgsp1_rep	CDS	19100479	19100662	.	-	1	Parent=Os07t0505200-01
Chr07	irgsp1_rep	three_prime_UTR	19099679	19100478	.	-	.	Parent=Os07t0505200-01
Chr07	irgsp1_rep	mRNA	19099675	19103297	.	+	.	ID=Os07t0505300-01;Name=Os07t0505300-01;Locus_id=Os07g0505300;Note=Hypothetical gene.;Transcript_evidence=AK287717 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065135G12;TENOR=Os07t0505300-01;KEGG=Os07t0505300-01
Chr07	irgsp1_rep	five_prime_UTR	19099675	19100655	.	+	.	Parent=Os07t0505300-01
Chr07	irgsp1_rep	CDS	19100656	19100662	.	+	0	Parent=Os07t0505300-01
Chr07	irgsp1_rep	CDS	19102640	19102944	.	+	2	Parent=Os07t0505300-01
Chr07	irgsp1_rep	CDS	19103126	19103170	.	+	0	Parent=Os07t0505300-01
Chr07	irgsp1_rep	three_prime_UTR	19103171	19103297	.	+	.	Parent=Os07t0505300-01
Chr07	irgsp1_rep	mRNA	19161257	19165060	.	-	.	ID=Os07t0506000-01;Name=Os07t0506000-01;Locus_id=Os07g0506000;Note=Protein of unknown function DUF300 family protein.;Transcript_evidence=AK103102 (DDBJ%2C Best hit),AK068687 (DDBJ%2C Best hit);ORF_evidence=B6TKI4 (UniProt);InterPro=Protein of unknown function DUF300 (IPR005178);NIAS_FLcDNA=J033118N22,J013160E09;TENOR=Os07t0506000-01
Chr07	irgsp1_rep	five_prime_UTR	19164952	19165060	.	-	.	Parent=Os07t0506000-01
Chr07	irgsp1_rep	five_prime_UTR	19163886	19163890	.	-	.	Parent=Os07t0506000-01
Chr07	irgsp1_rep	CDS	19163598	19163885	.	-	0	Parent=Os07t0506000-01
Chr07	irgsp1_rep	CDS	19163396	19163518	.	-	0	Parent=Os07t0506000-01
Chr07	irgsp1_rep	CDS	19162436	19162726	.	-	0	Parent=Os07t0506000-01
Chr07	irgsp1_rep	CDS	19161528	19161731	.	-	0	Parent=Os07t0506000-01
Chr07	irgsp1_rep	three_prime_UTR	19161257	19161527	.	-	.	Parent=Os07t0506000-01
Chr07	irgsp1_rep	mRNA	19161257	19165036	.	-	.	ID=Os07t0506000-02;Name=Os07t0506000-02;Locus_id=Os07g0506000;Note=Protein of unknown function DUF300 family protein.;Transcript_evidence=AK104035 (DDBJ%2C Best hit);ORF_evidence=B6TKI4 (UniProt);InterPro=Protein of unknown function DUF300 (IPR005178);NIAS_FLcDNA=001-020-G11;TENOR=Os07t0506000-02
Chr07	irgsp1_rep	five_prime_UTR	19164952	19165036	.	-	.	Parent=Os07t0506000-02
Chr07	irgsp1_rep	five_prime_UTR	19163886	19163890	.	-	.	Parent=Os07t0506000-02
Chr07	irgsp1_rep	CDS	19163598	19163885	.	-	0	Parent=Os07t0506000-02
Chr07	irgsp1_rep	CDS	19163396	19163518	.	-	0	Parent=Os07t0506000-02
Chr07	irgsp1_rep	CDS	19162436	19162726	.	-	0	Parent=Os07t0506000-02
Chr07	irgsp1_rep	CDS	19161528	19161731	.	-	0	Parent=Os07t0506000-02
Chr07	irgsp1_rep	three_prime_UTR	19161257	19161527	.	-	.	Parent=Os07t0506000-02
Chr07	irgsp1_rep	mRNA	19223928	19230408	.	+	.	ID=Os07t0506600-01;Name=Os07t0506600-01;Locus_id=Os07g0506600;Note=Protein of unknown function DUF869%2C plant family protein.;Transcript_evidence=AK072171 (DDBJ%2C Best hit);ORF_evidence=B8B6F9 (UniProt);InterPro=Protein of unknown function DUF869%2C plant (IPR008587);NIAS_FLcDNA=J013135H18;Expression=AK072171;TENOR=Os07t0506600-01;KEGG=Os07t0506600-01
Chr07	irgsp1_rep	five_prime_UTR	19223928	19224062	.	+	.	Parent=Os07t0506600-01
Chr07	irgsp1_rep	five_prime_UTR	19224792	19224868	.	+	.	Parent=Os07t0506600-01
Chr07	irgsp1_rep	CDS	19224869	19224973	.	+	0	Parent=Os07t0506600-01
Chr07	irgsp1_rep	CDS	19226701	19226881	.	+	0	Parent=Os07t0506600-01
Chr07	irgsp1_rep	CDS	19227340	19227824	.	+	2	Parent=Os07t0506600-01
Chr07	irgsp1_rep	CDS	19228456	19229862	.	+	0	Parent=Os07t0506600-01
Chr07	irgsp1_rep	CDS	19229992	19230207	.	+	0	Parent=Os07t0506600-01
Chr07	irgsp1_rep	three_prime_UTR	19230208	19230408	.	+	.	Parent=Os07t0506600-01
Chr07	irgsp1_rep	mRNA	19228735	19230480	.	+	.	ID=Os07t0506600-02;Name=Os07t0506600-02;Locus_id=Os07g0506600;Note=Hypothetical conserved gene.;Transcript_evidence=AK071089 (DDBJ%2C Best hit);ORF_evidence=B8B6F9 (UniProt);InterPro=Protein of unknown function DUF869%2C plant (IPR008587);NIAS_FLcDNA=J023079F03;Expression=AK071089;TENOR=Os07t0506600-02;KEGG=Os07t0506600-02
Chr07	irgsp1_rep	CDS	19228735	19229862	.	+	0	Parent=Os07t0506600-02
Chr07	irgsp1_rep	CDS	19229992	19230207	.	+	0	Parent=Os07t0506600-02
Chr07	irgsp1_rep	three_prime_UTR	19230208	19230480	.	+	.	Parent=Os07t0506600-02
Chr07	irgsp1_rep	mRNA	19231649	19235993	.	-	.	ID=Os07t0506700-01;Name=Os07t0506700-01;Locus_id=Os07g0506700;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK073959 (DDBJ%2C Best hit);ORF_evidence=E5GBV4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Quinonprotein alcohol dehydrogenase-like (IPR011047),WD40/YVTN repeat-like-containing domain (IPR015943);NIAS_FLcDNA=J033071L22;Expression=AK073959;TENOR=Os07t0506700-01;KEGG=Os07t0506700-01
Chr07	irgsp1_rep	five_prime_UTR	19235927	19235993	.	-	.	Parent=Os07t0506700-01
Chr07	irgsp1_rep	CDS	19235845	19235926	.	-	0	Parent=Os07t0506700-01
Chr07	irgsp1_rep	CDS	19235614	19235729	.	-	2	Parent=Os07t0506700-01
Chr07	irgsp1_rep	CDS	19235491	19235520	.	-	0	Parent=Os07t0506700-01
Chr07	irgsp1_rep	CDS	19235258	19235403	.	-	0	Parent=Os07t0506700-01
Chr07	irgsp1_rep	CDS	19234921	19235097	.	-	1	Parent=Os07t0506700-01
Chr07	irgsp1_rep	CDS	19234713	19234776	.	-	1	Parent=Os07t0506700-01
Chr07	irgsp1_rep	CDS	19234490	19234597	.	-	0	Parent=Os07t0506700-01
Chr07	irgsp1_rep	CDS	19234014	19234178	.	-	0	Parent=Os07t0506700-01
Chr07	irgsp1_rep	three_prime_UTR	19233106	19234013	.	-	.	Parent=Os07t0506700-01
Chr07	irgsp1_rep	three_prime_UTR	19232894	19232949	.	-	.	Parent=Os07t0506700-01
Chr07	irgsp1_rep	three_prime_UTR	19232369	19232426	.	-	.	Parent=Os07t0506700-01
Chr07	irgsp1_rep	three_prime_UTR	19231649	19232095	.	-	.	Parent=Os07t0506700-01
Chr07	irgsp1_rep	mRNA	19243399	19247632	.	-	.	ID=Os07t0507000-01;Name=Os07t0507000-01;Locus_id=Os07g0507000;RAP-DB Gene Symbol Synonym(s)=OsPP95;RAP-DB Gene Name Synonym(s)=protein phosphatase 95;Oryzabase Gene Symbol Synonym(s)=OsPP2C62%2C PP2C62%2C OsPP95%2C PP95;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C62%2C protein phosphatase 2C 62%2C protein phosphatase 95%2C PROTEIN PHOSPHATASE95;Note=Protein phosphatases type-2C (PP2C) protein phosphatase%2C Regulation of phosphate homeostasis;Transcript_evidence=AK243539;ORF_evidence=Q0D673;GO=Molecular Function: catalytic activity (GO:0003824);InterPro=PPM-type phosphatase domain superfamily (IPR036457),PPM-type phosphatase domain (IPR001932);NIAS_FLcDNA=J100078G04;Manual Curation=January 14%2C 2020;Literature_PMID=31919298;Oryzabase=17935;TENOR=Os07t0507000-01;KEGG=Os07t0507000-01 (EC:3.1.3.16);Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737), endoplasmic reticulum (GO:0005783)
Chr07	irgsp1_rep	five_prime_UTR	19247457	19247632	.	-	.	Parent=Os07t0507000-01
Chr07	irgsp1_rep	CDS	19247418	19247456	.	-	0	Parent=Os07t0507000-01
Chr07	irgsp1_rep	CDS	19246220	19246471	.	-	0	Parent=Os07t0507000-01
Chr07	irgsp1_rep	CDS	19245222	19245507	.	-	0	Parent=Os07t0507000-01
Chr07	irgsp1_rep	CDS	19244637	19244791	.	-	2	Parent=Os07t0507000-01
Chr07	irgsp1_rep	CDS	19243565	19243705	.	-	0	Parent=Os07t0507000-01
Chr07	irgsp1_rep	three_prime_UTR	19243399	19243564	.	-	.	Parent=Os07t0507000-01
Chr07	irgsp1_rep	mRNA	19252935	19257984	.	-	.	ID=Os07t0507200-01;Name=Os07t0507200-01;Locus_id=Os07g0507200;Note=Cell cycle regulated microtubule associated protein domain containing protein.;Transcript_evidence=AK102722 (DDBJ%2C Best hit);ORF_evidence=B9FXF0 (UniProt);InterPro=Cell cycle regulated microtubule associated protein (IPR022021);NIAS_FLcDNA=J033105H15;TENOR=Os07t0507200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	19257893	19257984	.	-	.	Parent=Os07t0507200-01
Chr07	irgsp1_rep	CDS	19257721	19257892	.	-	0	Parent=Os07t0507200-01
Chr07	irgsp1_rep	CDS	19257531	19257616	.	-	2	Parent=Os07t0507200-01
Chr07	irgsp1_rep	CDS	19257369	19257427	.	-	0	Parent=Os07t0507200-01
Chr07	irgsp1_rep	CDS	19257228	19257264	.	-	1	Parent=Os07t0507200-01
Chr07	irgsp1_rep	CDS	19257070	19257131	.	-	0	Parent=Os07t0507200-01
Chr07	irgsp1_rep	CDS	19256899	19256984	.	-	1	Parent=Os07t0507200-01
Chr07	irgsp1_rep	CDS	19256595	19256811	.	-	2	Parent=Os07t0507200-01
Chr07	irgsp1_rep	CDS	19256404	19256512	.	-	1	Parent=Os07t0507200-01
Chr07	irgsp1_rep	CDS	19256189	19256308	.	-	0	Parent=Os07t0507200-01
Chr07	irgsp1_rep	CDS	19255960	19256055	.	-	0	Parent=Os07t0507200-01
Chr07	irgsp1_rep	CDS	19255542	19255718	.	-	0	Parent=Os07t0507200-01
Chr07	irgsp1_rep	CDS	19255391	19255453	.	-	0	Parent=Os07t0507200-01
Chr07	irgsp1_rep	CDS	19255156	19255305	.	-	0	Parent=Os07t0507200-01
Chr07	irgsp1_rep	three_prime_UTR	19255030	19255155	.	-	.	Parent=Os07t0507200-01
Chr07	irgsp1_rep	three_prime_UTR	19254863	19254941	.	-	.	Parent=Os07t0507200-01
Chr07	irgsp1_rep	three_prime_UTR	19254647	19254775	.	-	.	Parent=Os07t0507200-01
Chr07	irgsp1_rep	three_prime_UTR	19254480	19254566	.	-	.	Parent=Os07t0507200-01
Chr07	irgsp1_rep	three_prime_UTR	19254017	19254392	.	-	.	Parent=Os07t0507200-01
Chr07	irgsp1_rep	three_prime_UTR	19253820	19253928	.	-	.	Parent=Os07t0507200-01
Chr07	irgsp1_rep	three_prime_UTR	19253674	19253733	.	-	.	Parent=Os07t0507200-01
Chr07	irgsp1_rep	three_prime_UTR	19253480	19253574	.	-	.	Parent=Os07t0507200-01
Chr07	irgsp1_rep	three_prime_UTR	19252935	19253388	.	-	.	Parent=Os07t0507200-01
Chr07	irgsp1_rep	mRNA	19258741	19268283	.	-	.	ID=Os07t0507300-01;Name=Os07t0507300-01;Locus_id=Os07g0507300;Note=Similar to GCK-like kinase MIK.;Transcript_evidence=AK102538 (DDBJ%2C Best hit);ORF_evidence=NP_001105208.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033096J18;Expression=AK102538;TENOR=Os07t0507300-01;KEGG=Os07t0507300-01
Chr07	irgsp1_rep	five_prime_UTR	19268016	19268283	.	-	.	Parent=Os07t0507300-01
Chr07	irgsp1_rep	CDS	19267921	19268015	.	-	0	Parent=Os07t0507300-01
Chr07	irgsp1_rep	CDS	19265627	19265683	.	-	1	Parent=Os07t0507300-01
Chr07	irgsp1_rep	CDS	19265307	19265334	.	-	1	Parent=Os07t0507300-01
Chr07	irgsp1_rep	CDS	19265076	19265198	.	-	0	Parent=Os07t0507300-01
Chr07	irgsp1_rep	CDS	19264822	19264933	.	-	0	Parent=Os07t0507300-01
Chr07	irgsp1_rep	CDS	19263591	19263628	.	-	2	Parent=Os07t0507300-01
Chr07	irgsp1_rep	CDS	19263418	19263471	.	-	0	Parent=Os07t0507300-01
Chr07	irgsp1_rep	CDS	19262995	19263063	.	-	0	Parent=Os07t0507300-01
Chr07	irgsp1_rep	CDS	19262806	19262922	.	-	0	Parent=Os07t0507300-01
Chr07	irgsp1_rep	CDS	19262628	19262696	.	-	0	Parent=Os07t0507300-01
Chr07	irgsp1_rep	CDS	19261970	19262049	.	-	0	Parent=Os07t0507300-01
Chr07	irgsp1_rep	CDS	19261717	19261848	.	-	1	Parent=Os07t0507300-01
Chr07	irgsp1_rep	CDS	19261358	19261631	.	-	1	Parent=Os07t0507300-01
Chr07	irgsp1_rep	CDS	19261195	19261287	.	-	0	Parent=Os07t0507300-01
Chr07	irgsp1_rep	CDS	19260441	19260605	.	-	0	Parent=Os07t0507300-01
Chr07	irgsp1_rep	CDS	19260232	19260356	.	-	0	Parent=Os07t0507300-01
Chr07	irgsp1_rep	CDS	19260007	19260133	.	-	1	Parent=Os07t0507300-01
Chr07	irgsp1_rep	CDS	19259386	19259510	.	-	0	Parent=Os07t0507300-01
Chr07	irgsp1_rep	CDS	19259104	19259265	.	-	1	Parent=Os07t0507300-01
Chr07	irgsp1_rep	CDS	19258986	19259025	.	-	1	Parent=Os07t0507300-01
Chr07	irgsp1_rep	three_prime_UTR	19258741	19258985	.	-	.	Parent=Os07t0507300-01
Chr07	irgsp1_rep	mRNA	19258910	19268232	.	-	.	ID=Os07t0507300-02;Name=Os07t0507300-02;Locus_id=Os07g0507300;Note=Similar to GCK-like kinase MIK.;Transcript_evidence=AK106514 (DDBJ%2C Best hit);ORF_evidence=NP_001105208.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-107-A09;Expression=AK106514;TENOR=Os07t0507300-02;KEGG=Os07t0507300-02
Chr07	irgsp1_rep	five_prime_UTR	19268016	19268232	.	-	.	Parent=Os07t0507300-02
Chr07	irgsp1_rep	CDS	19267921	19268015	.	-	0	Parent=Os07t0507300-02
Chr07	irgsp1_rep	CDS	19265627	19265683	.	-	1	Parent=Os07t0507300-02
Chr07	irgsp1_rep	CDS	19265307	19265334	.	-	1	Parent=Os07t0507300-02
Chr07	irgsp1_rep	CDS	19265076	19265198	.	-	0	Parent=Os07t0507300-02
Chr07	irgsp1_rep	CDS	19264822	19264933	.	-	0	Parent=Os07t0507300-02
Chr07	irgsp1_rep	CDS	19263591	19263628	.	-	2	Parent=Os07t0507300-02
Chr07	irgsp1_rep	CDS	19263418	19263471	.	-	0	Parent=Os07t0507300-02
Chr07	irgsp1_rep	CDS	19262995	19263063	.	-	0	Parent=Os07t0507300-02
Chr07	irgsp1_rep	CDS	19262806	19262922	.	-	0	Parent=Os07t0507300-02
Chr07	irgsp1_rep	CDS	19262628	19262696	.	-	0	Parent=Os07t0507300-02
Chr07	irgsp1_rep	CDS	19261970	19262049	.	-	0	Parent=Os07t0507300-02
Chr07	irgsp1_rep	CDS	19261717	19261848	.	-	1	Parent=Os07t0507300-02
Chr07	irgsp1_rep	CDS	19261358	19261631	.	-	1	Parent=Os07t0507300-02
Chr07	irgsp1_rep	CDS	19261195	19261287	.	-	0	Parent=Os07t0507300-02
Chr07	irgsp1_rep	CDS	19260441	19260605	.	-	0	Parent=Os07t0507300-02
Chr07	irgsp1_rep	CDS	19260232	19260356	.	-	0	Parent=Os07t0507300-02
Chr07	irgsp1_rep	CDS	19260007	19260133	.	-	1	Parent=Os07t0507300-02
Chr07	irgsp1_rep	CDS	19259386	19259510	.	-	0	Parent=Os07t0507300-02
Chr07	irgsp1_rep	CDS	19259094	19259265	.	-	1	Parent=Os07t0507300-02
Chr07	irgsp1_rep	three_prime_UTR	19258910	19259093	.	-	.	Parent=Os07t0507300-02
Chr07	irgsp1_rep	mRNA	19271812	19276185	.	-	.	ID=Os07t0507500-01;Name=Os07t0507500-01;Locus_id=Os07g0507500;Note=Protein of unknown function DUF1723 domain containing protein.;Transcript_evidence=AK100690 (DDBJ%2C Best hit);ORF_evidence=B8B6G4 (UniProt);InterPro=Aminotransferase-like%2C plant mobile domain (IPR019557);NIAS_FLcDNA=J023114F23;Expression=AK100690;TENOR=Os07t0507500-01;KEGG=Os07t0507500-01
Chr07	irgsp1_rep	five_prime_UTR	19276078	19276185	.	-	.	Parent=Os07t0507500-01
Chr07	irgsp1_rep	CDS	19274812	19274856	.	-	0	Parent=Os07t0507500-01
Chr07	irgsp1_rep	CDS	19274043	19274696	.	-	0	Parent=Os07t0507500-01
Chr07	irgsp1_rep	CDS	19273572	19273733	.	-	0	Parent=Os07t0507500-01
Chr07	irgsp1_rep	CDS	19273061	19273447	.	-	0	Parent=Os07t0507500-01
Chr07	irgsp1_rep	CDS	19272040	19272561	.	-	0	Parent=Os07t0507500-01
Chr07	irgsp1_rep	three_prime_UTR	19271812	19272039	.	-	.	Parent=Os07t0507500-01
Chr07	irgsp1_rep	mRNA	19276524	19281520	.	-	.	ID=Os07t0507600-01;Name=Os07t0507600-01;Locus_id=Os07g0507600;Note=Protein of unknown function DUF1723 domain containing protein.;Transcript_evidence=AK103361 (DDBJ%2C Best hit);ORF_evidence=B9FXF2 (UniProt);InterPro=Aminotransferase-like%2C plant mobile domain (IPR019557);NIAS_FLcDNA=J033126N01;Expression=AK103361;TENOR=Os07t0507600-01;KEGG=Os07t0507600-01
Chr07	irgsp1_rep	five_prime_UTR	19281421	19281520	.	-	.	Parent=Os07t0507600-01
Chr07	irgsp1_rep	five_prime_UTR	19279036	19279040	.	-	.	Parent=Os07t0507600-01
Chr07	irgsp1_rep	CDS	19278952	19279035	.	-	0	Parent=Os07t0507600-01
Chr07	irgsp1_rep	CDS	19278221	19278874	.	-	0	Parent=Os07t0507600-01
Chr07	irgsp1_rep	CDS	19277974	19278136	.	-	0	Parent=Os07t0507600-01
Chr07	irgsp1_rep	CDS	19277509	19277885	.	-	2	Parent=Os07t0507600-01
Chr07	irgsp1_rep	CDS	19276843	19277424	.	-	0	Parent=Os07t0507600-01
Chr07	irgsp1_rep	three_prime_UTR	19276524	19276842	.	-	.	Parent=Os07t0507600-01
Chr07	irgsp1_rep	mRNA	19281750	19289756	.	+	.	ID=Os07t0507700-01;Name=Os07t0507700-01;Locus_id=Os07g0507700;Note=Bromodomain domain containing protein.;Transcript_evidence=AK102283 (DDBJ%2C Best hit);ORF_evidence=B9FXF3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Bromodomain (IPR001487);NIAS_FLcDNA=J033089G08;TENOR=Os07t0507700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	19281750	19281750	.	+	.	Parent=Os07t0507700-01
Chr07	irgsp1_rep	CDS	19281751	19282010	.	+	0	Parent=Os07t0507700-01
Chr07	irgsp1_rep	CDS	19285231	19285969	.	+	1	Parent=Os07t0507700-01
Chr07	irgsp1_rep	CDS	19286047	19286095	.	+	0	Parent=Os07t0507700-01
Chr07	irgsp1_rep	CDS	19286179	19286243	.	+	2	Parent=Os07t0507700-01
Chr07	irgsp1_rep	CDS	19286353	19286407	.	+	0	Parent=Os07t0507700-01
Chr07	irgsp1_rep	CDS	19286481	19286540	.	+	2	Parent=Os07t0507700-01
Chr07	irgsp1_rep	CDS	19287686	19287804	.	+	2	Parent=Os07t0507700-01
Chr07	irgsp1_rep	CDS	19287925	19287991	.	+	0	Parent=Os07t0507700-01
Chr07	irgsp1_rep	CDS	19288895	19289016	.	+	2	Parent=Os07t0507700-01
Chr07	irgsp1_rep	CDS	19289100	19289369	.	+	0	Parent=Os07t0507700-01
Chr07	irgsp1_rep	three_prime_UTR	19289370	19289756	.	+	.	Parent=Os07t0507700-01
Chr07	irgsp1_rep	mRNA	19289091	19289369	.	-	.	ID=Os07t0507850-00;Name=Os07t0507850-00;Locus_id=Os07g0507850;Note=Non-protein coding transcript.;Transcript_evidence=BT019062 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0507850-00
Chr07	irgsp1_rep	exon	19289091	19289369	.	-	.	Parent=Os07t0507850-00
Chr07	irgsp1_rep	mRNA	19290923	19299094	.	-	.	ID=Os07t0508000-01;Name=Os07t0508000-01;Locus_id=Os07g0508000;Note=Similar to ADR224Wp.;Transcript_evidence=AK073417 (DDBJ%2C Best hit);ORF_evidence=E4MWG4 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=Helicase%2C C-terminal (IPR001650),Helicase-associated domain (IPR007502),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),Domain of unknown function DUF1605 (IPR011709),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J033041J24;Expression=AK073417;TENOR=Os07t0508000-01;KEGG=Os07t0508000-01 (EC:3.6.4.13)
Chr07	irgsp1_rep	five_prime_UTR	19298947	19299094	.	-	.	Parent=Os07t0508000-01
Chr07	irgsp1_rep	CDS	19298941	19298946	.	-	0	Parent=Os07t0508000-01
Chr07	irgsp1_rep	CDS	19298726	19298846	.	-	0	Parent=Os07t0508000-01
Chr07	irgsp1_rep	CDS	19298286	19298501	.	-	2	Parent=Os07t0508000-01
Chr07	irgsp1_rep	CDS	19298136	19298206	.	-	2	Parent=Os07t0508000-01
Chr07	irgsp1_rep	CDS	19297758	19298022	.	-	0	Parent=Os07t0508000-01
Chr07	irgsp1_rep	CDS	19297487	19297666	.	-	2	Parent=Os07t0508000-01
Chr07	irgsp1_rep	CDS	19297262	19297392	.	-	2	Parent=Os07t0508000-01
Chr07	irgsp1_rep	CDS	19296365	19296462	.	-	0	Parent=Os07t0508000-01
Chr07	irgsp1_rep	CDS	19295906	19296011	.	-	1	Parent=Os07t0508000-01
Chr07	irgsp1_rep	CDS	19295137	19295314	.	-	0	Parent=Os07t0508000-01
Chr07	irgsp1_rep	CDS	19294292	19294521	.	-	2	Parent=Os07t0508000-01
Chr07	irgsp1_rep	CDS	19294032	19294211	.	-	0	Parent=Os07t0508000-01
Chr07	irgsp1_rep	CDS	19293434	19293682	.	-	0	Parent=Os07t0508000-01
Chr07	irgsp1_rep	CDS	19293084	19293145	.	-	0	Parent=Os07t0508000-01
Chr07	irgsp1_rep	CDS	19292837	19292989	.	-	1	Parent=Os07t0508000-01
Chr07	irgsp1_rep	CDS	19291152	19292748	.	-	1	Parent=Os07t0508000-01
Chr07	irgsp1_rep	three_prime_UTR	19290923	19291151	.	-	.	Parent=Os07t0508000-01
Chr07	irgsp1_rep	mRNA	19295570	19301273	.	+	.	ID=Os07t0508101-01;Name=Os07t0508101-01;Locus_id=Os07g0508101;Note=Conserved hypothetical protein.;Transcript_evidence=AK288907 (DDBJ%2C Best hit);ORF_evidence=Q8LIK2 (UniProt);NIAS_FLcDNA=J090081C13;TENOR=Os07t0508101-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	19295570	19301005	.	+	.	Parent=Os07t0508101-01
Chr07	irgsp1_rep	CDS	19301006	19301233	.	+	0	Parent=Os07t0508101-01
Chr07	irgsp1_rep	three_prime_UTR	19301234	19301273	.	+	.	Parent=Os07t0508101-01
Chr07	irgsp1_rep	mRNA	19304825	19309468	.	+	.	ID=Os07t0508200-01;Name=Os07t0508200-01;Locus_id=Os07g0508200;Oryzabase Gene Symbol Synonym(s)=SIP30;Oryzabase Gene Name Synonym(s)=SKIP interacting protein 30%2C SKIPa-interacting protein 30%2C SKIPa-interacting protein 30;Note=Similar to SKIP interacting protein 30 (Fragment).;Transcript_evidence=AK069914 (DDBJ%2C Best hit);ORF_evidence=B8Q8B6 (UniProt);NIAS_FLcDNA=J023039M07;Oryzabase=9962;Expression=AK069914;TENOR=Os07t0508200-01;KEGG=Os07t0508200-01
Chr07	irgsp1_rep	five_prime_UTR	19304825	19304892	.	+	.	Parent=Os07t0508200-01
Chr07	irgsp1_rep	CDS	19304893	19305390	.	+	0	Parent=Os07t0508200-01
Chr07	irgsp1_rep	CDS	19308013	19308245	.	+	0	Parent=Os07t0508200-01
Chr07	irgsp1_rep	CDS	19308632	19308786	.	+	1	Parent=Os07t0508200-01
Chr07	irgsp1_rep	CDS	19308999	19309075	.	+	2	Parent=Os07t0508200-01
Chr07	irgsp1_rep	CDS	19309151	19309258	.	+	0	Parent=Os07t0508200-01
Chr07	irgsp1_rep	three_prime_UTR	19309259	19309468	.	+	.	Parent=Os07t0508200-01
Chr07	irgsp1_rep	mRNA	19310107	19311340	.	+	.	ID=Os07t0508250-00;Name=Os07t0508250-00;Locus_id=Os07g0508250;Note=Hypothetical gene.;Transcript_evidence=BT018209 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0508250-00
Chr07	irgsp1_rep	five_prime_UTR	19310107	19310197	.	+	.	Parent=Os07t0508250-00
Chr07	irgsp1_rep	CDS	19310198	19310383	.	+	0	Parent=Os07t0508250-00
Chr07	irgsp1_rep	CDS	19310760	19310792	.	+	0	Parent=Os07t0508250-00
Chr07	irgsp1_rep	three_prime_UTR	19310793	19310822	.	+	.	Parent=Os07t0508250-00
Chr07	irgsp1_rep	three_prime_UTR	19310902	19311005	.	+	.	Parent=Os07t0508250-00
Chr07	irgsp1_rep	three_prime_UTR	19311085	19311144	.	+	.	Parent=Os07t0508250-00
Chr07	irgsp1_rep	three_prime_UTR	19311235	19311340	.	+	.	Parent=Os07t0508250-00
Chr07	irgsp1_rep	mRNA	19309976	19315478	.	-	.	ID=Os07t0508300-01;Name=Os07t0508300-01;Locus_id=Os07g0508300;Note=Similar to SH3 domain-containing protein 3.;Transcript_evidence=AK073874 (DDBJ%2C Best hit);ORF_evidence=B6T6P3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Neutrophil cytosol factor 2 p67phox (IPR000108),Src homology-3 domain (IPR001452),Variant SH3 (IPR011511);NIAS_FLcDNA=J033071B14;Expression=AK073874;TENOR=Os07t0508300-01;KEGG=Os07t0508300-01
Chr07	irgsp1_rep	five_prime_UTR	19315180	19315478	.	-	.	Parent=Os07t0508300-01
Chr07	irgsp1_rep	CDS	19315120	19315179	.	-	0	Parent=Os07t0508300-01
Chr07	irgsp1_rep	CDS	19314039	19314161	.	-	0	Parent=Os07t0508300-01
Chr07	irgsp1_rep	CDS	19313715	19313784	.	-	0	Parent=Os07t0508300-01
Chr07	irgsp1_rep	CDS	19312855	19313003	.	-	2	Parent=Os07t0508300-01
Chr07	irgsp1_rep	CDS	19311552	19311653	.	-	0	Parent=Os07t0508300-01
Chr07	irgsp1_rep	CDS	19311238	19311435	.	-	0	Parent=Os07t0508300-01
Chr07	irgsp1_rep	CDS	19311085	19311147	.	-	0	Parent=Os07t0508300-01
Chr07	irgsp1_rep	CDS	19310916	19311005	.	-	0	Parent=Os07t0508300-01
Chr07	irgsp1_rep	CDS	19310760	19310834	.	-	0	Parent=Os07t0508300-01
Chr07	irgsp1_rep	CDS	19310267	19310383	.	-	0	Parent=Os07t0508300-01
Chr07	irgsp1_rep	three_prime_UTR	19309976	19310266	.	-	.	Parent=Os07t0508300-01
Chr07	irgsp1_rep	mRNA	19309972	19311007	.	-	.	ID=Os07t0508300-02;Name=Os07t0508300-02;Locus_id=Os07g0508300;Note=Similar to clathrin binding protein.;Transcript_evidence=AK063908 (DDBJ%2C Best hit);ORF_evidence=NP_001150587.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Neutrophil cytosol factor 2 p67phox (IPR000108),Src homology-3 domain (IPR001452),Variant SH3 (IPR011511);NIAS_FLcDNA=001-123-A02;Expression=AK063908;TENOR=Os07t0508300-02;KEGG=Os07t0508300-02
Chr07	irgsp1_rep	five_prime_UTR	19311006	19311007	.	-	.	Parent=Os07t0508300-02
Chr07	irgsp1_rep	CDS	19310916	19311005	.	-	0	Parent=Os07t0508300-02
Chr07	irgsp1_rep	CDS	19310760	19310834	.	-	0	Parent=Os07t0508300-02
Chr07	irgsp1_rep	CDS	19310267	19310383	.	-	0	Parent=Os07t0508300-02
Chr07	irgsp1_rep	three_prime_UTR	19309972	19310266	.	-	.	Parent=Os07t0508300-02
Chr07	irgsp1_rep	mRNA	19325781	19331880	.	+	.	ID=Os07t0508500-01;Name=Os07t0508500-01;Locus_id=Os07g0508500;RAP-DB Gene Symbol Synonym(s)=BRK1;RAP-DB Gene Name Synonym(s)=Bub1-related kinase 1;Oryzabase Gene Symbol Synonym(s)=BRK1;Oryzabase Gene Name Synonym(s)=Bub1-related kinase 1;Note=Ser/Thr kinase%2C Generation of proper tension between homologous kinetochores;Transcript_evidence=JQ990990 (Zhongxian 3037);ORF_evidence=I6UFZ9;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Mitotic checkpoint serine/threonine protein kinase Bub1/Mitotic spindle checkpoint component Mad3 (IPR015661),Mad3/BUB1 homology region 1 (IPR013212),Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271);Manual Curation=June 19%2C 2014;Literature_PMID=23243128;Oryzabase=12255;TENOR=Os07t0508500-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	19325781	19325967	.	+	.	Parent=Os07t0508500-01
Chr07	irgsp1_rep	CDS	19325968	19326113	.	+	0	Parent=Os07t0508500-01
Chr07	irgsp1_rep	CDS	19326916	19327075	.	+	1	Parent=Os07t0508500-01
Chr07	irgsp1_rep	CDS	19327163	19327320	.	+	0	Parent=Os07t0508500-01
Chr07	irgsp1_rep	CDS	19327431	19327524	.	+	1	Parent=Os07t0508500-01
Chr07	irgsp1_rep	CDS	19328698	19328808	.	+	0	Parent=Os07t0508500-01
Chr07	irgsp1_rep	CDS	19328888	19328975	.	+	0	Parent=Os07t0508500-01
Chr07	irgsp1_rep	CDS	19329194	19329297	.	+	2	Parent=Os07t0508500-01
Chr07	irgsp1_rep	CDS	19329375	19329446	.	+	0	Parent=Os07t0508500-01
Chr07	irgsp1_rep	CDS	19329529	19329618	.	+	0	Parent=Os07t0508500-01
Chr07	irgsp1_rep	CDS	19329730	19329887	.	+	0	Parent=Os07t0508500-01
Chr07	irgsp1_rep	CDS	19330719	19330773	.	+	1	Parent=Os07t0508500-01
Chr07	irgsp1_rep	CDS	19330866	19331000	.	+	0	Parent=Os07t0508500-01
Chr07	irgsp1_rep	CDS	19331122	19331243	.	+	0	Parent=Os07t0508500-01
Chr07	irgsp1_rep	CDS	19331495	19331684	.	+	1	Parent=Os07t0508500-01
Chr07	irgsp1_rep	three_prime_UTR	19331685	19331880	.	+	.	Parent=Os07t0508500-01
Chr07	irgsp1_rep	mRNA	19363127	19363438	.	+	.	ID=Os07t0508700-00;Name=Os07t0508700-00;Locus_id=Os07g0508700;Note=Conserved hypothetical protein.;Transcript_evidence=GQ183538 (DDBJ%2C Best hit);ORF_evidence=NP_001059746.1 (RefSeq);TENOR=Os07t0508700-00
Chr07	irgsp1_rep	CDS	19363127	19363438	.	+	0	Parent=Os07t0508700-00
Chr07	irgsp1_rep	mRNA	19363561	19364738	.	+	.	ID=Os07t0508900-00;Name=Os07t0508900-00;Locus_id=Os07g0508900;CGSNL Gene Symbol=DOF22;CGSNL Gene Name=DNA BINDING WITH ONE FINGER 22;Oryzabase Gene Symbol Synonym(s)=OsDof22%2C Dof22%2C OsDof-22;Oryzabase Gene Name Synonym(s)=Dof zinc factor 22%2C Dof transcription factor 22;Note=Hypothetical conserved gene.;Transcript_evidence=CU405956 (DDBJ%2C Best hit);ORF_evidence=NP_001059746.1 (RefSeq);Oryzabase=8812;TENOR=Os07t0508900-00;KEGG=Os07t0508900-00
Chr07	irgsp1_rep	five_prime_UTR	19363561	19363561	.	+	.	Parent=Os07t0508900-00
Chr07	irgsp1_rep	CDS	19363562	19363684	.	+	0	Parent=Os07t0508900-00
Chr07	irgsp1_rep	three_prime_UTR	19363685	19364738	.	+	.	Parent=Os07t0508900-00
Chr07	irgsp1_rep	mRNA	19378880	19381731	.	-	.	ID=Os07t0509200-01;Name=Os07t0509200-01;Locus_id=Os07g0509200;CGSNL Gene Symbol=HAK14;CGSNL Gene Name=HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 14;Oryzabase Gene Symbol Synonym(s)=OsHAK14;Oryzabase Gene Name Synonym(s)=High-affinity Potassium(K+) Transporter 14%2C Probable potassium transporter 14;Note=Similar to Potassium transporter 7 (AtPOT7) (AtHAK7).;Transcript_evidence=AK106582 (DDBJ%2C Best hit);ORF_evidence=NP_568213.2 (RefSeq);GO=Biological Process: potassium ion transmembrane transport (GO:0071805),Cellular Component: membrane (GO:0016020),Molecular Function: potassium ion transmembrane transporter activity (GO:0015079);InterPro=K+ potassium transporter (IPR003855);NIAS_FLcDNA=002-111-E03;Oryzabase=8668;Expression=AK106582;TENOR=Os07t0509200-01;KEGG=Os07t0509200-01
Chr07	irgsp1_rep	five_prime_UTR	19381730	19381731	.	-	.	Parent=Os07t0509200-01
Chr07	irgsp1_rep	CDS	19381477	19381729	.	-	0	Parent=Os07t0509200-01
Chr07	irgsp1_rep	CDS	19380688	19381210	.	-	2	Parent=Os07t0509200-01
Chr07	irgsp1_rep	CDS	19379105	19379633	.	-	1	Parent=Os07t0509200-01
Chr07	irgsp1_rep	three_prime_UTR	19378880	19379104	.	-	.	Parent=Os07t0509200-01
Chr07	irgsp1_rep	mRNA	19380685	19381214	.	+	.	ID=Os07t0509300-00;Name=Os07t0509300-00;Locus_id=Os07g0509300;Note=Hypothetical protein.;Transcript_evidence=EU968841 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0509300-00
Chr07	irgsp1_rep	five_prime_UTR	19380685	19380996	.	+	.	Parent=Os07t0509300-00
Chr07	irgsp1_rep	CDS	19380997	19381214	.	+	0	Parent=Os07t0509300-00
Chr07	irgsp1_rep	mRNA	19403553	19405023	.	+	.	ID=Os07t0509600-01;Name=Os07t0509600-01;Locus_id=Os07g0509600;Note=Similar to ribosomal RNA adenine dimethylase family protein.;Transcript_evidence=AK110955 (DDBJ%2C Best hit);ORF_evidence=XP_002866759.1 (RefSeq);GO=Biological Process: rRNA modification (GO:0000154),Biological Process: rRNA processing (GO:0006364),Molecular Function: rRNA (adenine-N6%2CN6-)-dimethyltransferase activity (GO:0000179),Molecular Function: rRNA methyltransferase activity (GO:0008649),Molecular Function: rRNA (adenine) methyltransferase activity (GO:0016433);InterPro=Ribosomal RNA adenine methylase transferase (IPR001737),Ribosomal RNA adenine dimethylase (IPR011530),Ribosomal RNA adenine methylase transferase%2C conserved site (IPR020596),Ribosomal RNA adenine methylase transferase%2C N-terminal (IPR020598);NIAS_FLcDNA=002-174-A05;TENOR=Os07t0509600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	19403553	19403554	.	+	.	Parent=Os07t0509600-01
Chr07	irgsp1_rep	CDS	19403555	19403869	.	+	0	Parent=Os07t0509600-01
Chr07	irgsp1_rep	CDS	19403951	19404679	.	+	0	Parent=Os07t0509600-01
Chr07	irgsp1_rep	three_prime_UTR	19404680	19405023	.	+	.	Parent=Os07t0509600-01
Chr07	irgsp1_rep	mRNA	19405852	19407067	.	-	.	ID=Os07t0509700-01;Name=Os07t0509700-01;Locus_id=Os07g0509700;Note=Peptidase S16%2C lon N-terminal domain containing protein.;Transcript_evidence=AK241962 (DDBJ%2C Best hit),AK288060 (DDBJ%2C Best hit);ORF_evidence=NP_001147200.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: ATP-dependent peptidase activity (GO:0004176);InterPro=Peptidase S16%2C lon N-terminal (IPR003111),PUA-like domain (IPR015947);NIAS_FLcDNA=J075094E19,J075154C10;TENOR=Os07t0509700-01;KEGG=Os07t0509700-01
Chr07	irgsp1_rep	five_prime_UTR	19407000	19407067	.	-	.	Parent=Os07t0509700-01
Chr07	irgsp1_rep	CDS	19406124	19406999	.	-	0	Parent=Os07t0509700-01
Chr07	irgsp1_rep	three_prime_UTR	19405852	19406123	.	-	.	Parent=Os07t0509700-01
Chr07	irgsp1_rep	mRNA	19409979	19413299	.	-	.	ID=Os07t0509800-01;Name=Os07t0509800-01;Locus_id=Os07g0509800;Oryzabase Gene Symbol Synonym(s)=OsAPRL1;Oryzabase Gene Name Synonym(s)=adenosine 5'-phosphosulfate reductase-like protein 1;Note=Similar to adenosine 5'-phosphosulfate reductase 2.;Transcript_evidence=AK289238 (DDBJ%2C Best hit);ORF_evidence=NP_001105805.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Biological Process: sulfate reduction (GO:0019419),Biological Process: cell redox homeostasis (GO:0045454),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: oxidoreductase activity%2C acting on a sulfur group of donors%2C disulfide as acceptor (GO:0016671);InterPro=Phosphoadenosine phosphosulphate reductase (IPR002500),Thioredoxin-independent 5'-adenylylsulphate reductase (IPR004508),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J100074M03;Oryzabase=14066;TENOR=Os07t0509800-01;KEGG=Os07t0509800-01 (EC:1.8.4.9)
Chr07	irgsp1_rep	five_prime_UTR	19412900	19413299	.	-	.	Parent=Os07t0509800-01
Chr07	irgsp1_rep	CDS	19412520	19412899	.	-	0	Parent=Os07t0509800-01
Chr07	irgsp1_rep	CDS	19410289	19411342	.	-	1	Parent=Os07t0509800-01
Chr07	irgsp1_rep	three_prime_UTR	19409979	19410288	.	-	.	Parent=Os07t0509800-01
Chr07	irgsp1_rep	mRNA	19427927	19432234	.	+	.	ID=Os07t0510100-01;Name=Os07t0510100-01;Locus_id=Os07g0510100;Note=Similar to Methionine aminopeptidase-like protein.;Transcript_evidence=AK066776 (DDBJ%2C Best hit);ORF_evidence=B8B6P4 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: cellular process (GO:0009987),Molecular Function: aminopeptidase activity (GO:0004177),Molecular Function: metalloexopeptidase activity (GO:0008235);InterPro=Peptidase M24%2C structural domain (IPR000994),Peptidase M24%2C methionine aminopeptidase (IPR001714),Peptidase M24A%2C methionine aminopeptidase%2C subfamily 1 (IPR002467);NIAS_FLcDNA=J013075A01;Expression=AK066776;TENOR=Os07t0510100-01;KEGG=Os07t0510100-01 (EC:3.4.11.18)
Chr07	irgsp1_rep	five_prime_UTR	19427927	19427983	.	+	.	Parent=Os07t0510100-01
Chr07	irgsp1_rep	CDS	19427984	19428092	.	+	0	Parent=Os07t0510100-01
Chr07	irgsp1_rep	CDS	19428537	19428618	.	+	2	Parent=Os07t0510100-01
Chr07	irgsp1_rep	CDS	19428780	19429014	.	+	1	Parent=Os07t0510100-01
Chr07	irgsp1_rep	CDS	19429118	19429279	.	+	0	Parent=Os07t0510100-01
Chr07	irgsp1_rep	CDS	19429357	19429398	.	+	0	Parent=Os07t0510100-01
Chr07	irgsp1_rep	CDS	19429520	19429591	.	+	0	Parent=Os07t0510100-01
Chr07	irgsp1_rep	CDS	19429870	19429949	.	+	0	Parent=Os07t0510100-01
Chr07	irgsp1_rep	CDS	19430541	19430638	.	+	1	Parent=Os07t0510100-01
Chr07	irgsp1_rep	CDS	19431270	19431317	.	+	2	Parent=Os07t0510100-01
Chr07	irgsp1_rep	CDS	19431562	19431707	.	+	2	Parent=Os07t0510100-01
Chr07	irgsp1_rep	three_prime_UTR	19431708	19431821	.	+	.	Parent=Os07t0510100-01
Chr07	irgsp1_rep	three_prime_UTR	19431910	19432234	.	+	.	Parent=Os07t0510100-01
Chr07	irgsp1_rep	mRNA	19436998	19442748	.	+	.	ID=Os07t0510200-01;Name=Os07t0510200-01;Locus_id=Os07g0510200;Note=Glycoside hydrolase%2C family 17 protein.;Transcript_evidence=AK063956 (DDBJ%2C Best hit);ORF_evidence=NP_001152289.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-123-G01;Expression=AK063956;TENOR=Os07t0510200-01;KEGG=Os07t0510200-01
Chr07	irgsp1_rep	five_prime_UTR	19436998	19437053	.	+	.	Parent=Os07t0510200-01
Chr07	irgsp1_rep	CDS	19437054	19437138	.	+	0	Parent=Os07t0510200-01
Chr07	irgsp1_rep	CDS	19437386	19438708	.	+	2	Parent=Os07t0510200-01
Chr07	irgsp1_rep	CDS	19441959	19441986	.	+	2	Parent=Os07t0510200-01
Chr07	irgsp1_rep	CDS	19442437	19442623	.	+	1	Parent=Os07t0510200-01
Chr07	irgsp1_rep	three_prime_UTR	19442624	19442748	.	+	.	Parent=Os07t0510200-01
Chr07	irgsp1_rep	mRNA	19437029	19442716	.	+	.	ID=Os07t0510200-02;Name=Os07t0510200-02;Locus_id=Os07g0510200;Note=Glycoside hydrolase%2C family 17 protein.;Transcript_evidence=AK101250 (DDBJ%2C Best hit);ORF_evidence=NP_001152289.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J033032E23;Expression=AK101250;TENOR=Os07t0510200-02;KEGG=Os07t0510200-02
Chr07	irgsp1_rep	five_prime_UTR	19437029	19437053	.	+	.	Parent=Os07t0510200-02
Chr07	irgsp1_rep	CDS	19437054	19437138	.	+	0	Parent=Os07t0510200-02
Chr07	irgsp1_rep	CDS	19437386	19438708	.	+	2	Parent=Os07t0510200-02
Chr07	irgsp1_rep	CDS	19441959	19441986	.	+	2	Parent=Os07t0510200-02
Chr07	irgsp1_rep	CDS	19442437	19442623	.	+	1	Parent=Os07t0510200-02
Chr07	irgsp1_rep	three_prime_UTR	19442624	19442716	.	+	.	Parent=Os07t0510200-02
Chr07	irgsp1_rep	mRNA	19437047	19439329	.	+	.	ID=Os07t0510200-03;Name=Os07t0510200-03;Locus_id=Os07g0510200;Note=Similar to glucan endo-1%2C3-beta-glucosidase 3.;Transcript_evidence=AK069383 (DDBJ%2C Best hit);ORF_evidence=NP_001152289.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J023013E15;Expression=AK069383;TENOR=Os07t0510200-03;KEGG=Os07t0510200-03
Chr07	irgsp1_rep	five_prime_UTR	19437047	19437053	.	+	.	Parent=Os07t0510200-03
Chr07	irgsp1_rep	CDS	19437054	19437138	.	+	0	Parent=Os07t0510200-03
Chr07	irgsp1_rep	CDS	19437386	19438878	.	+	2	Parent=Os07t0510200-03
Chr07	irgsp1_rep	three_prime_UTR	19438879	19439329	.	+	.	Parent=Os07t0510200-03
Chr07	irgsp1_rep	mRNA	19444465	19444776	.	-	.	ID=Os07t0510300-00;Name=Os07t0510300-00;Locus_id=Os07g0510300;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001059753.1 (RefSeq);TENOR=Os07t0510300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	19444465	19444776	.	-	0	Parent=Os07t0510300-00
Chr07	irgsp1_rep	mRNA	19445216	19445510	.	-	.	ID=Os07t0510350-00;Name=Os07t0510350-00;Locus_id=Os07g0510350;Note=Similar to Endonuclease/exonuclease/phosphatase family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=E5GC61 (UniProt);TENOR=Os07t0510350-00
Chr07	irgsp1_rep	CDS	19445406	19445510	.	-	0	Parent=Os07t0510350-00
Chr07	irgsp1_rep	CDS	19445216	19445323	.	-	0	Parent=Os07t0510350-00
Chr07	irgsp1_rep	mRNA	19454526	19456170	.	-	.	ID=Os07t0510400-01;Name=Os07t0510400-01;Locus_id=Os07g0510400;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK119544 (DDBJ%2C Best hit),AK105912 (DDBJ%2C Best hit);ORF_evidence=NP_001148465.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=001-204-H01,001-204-G12;Expression=AK119544;TENOR=Os07t0510400-01;KEGG=Os07t0510400-01
Chr07	irgsp1_rep	five_prime_UTR	19456120	19456170	.	-	.	Parent=Os07t0510400-01
Chr07	irgsp1_rep	CDS	19454671	19456119	.	-	0	Parent=Os07t0510400-01
Chr07	irgsp1_rep	three_prime_UTR	19454526	19454670	.	-	.	Parent=Os07t0510400-01
Chr07	irgsp1_rep	mRNA	19454526	19456123	.	-	.	ID=Os07t0510400-02;Name=Os07t0510400-02;Locus_id=Os07g0510400;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK065987 (DDBJ%2C Best hit);ORF_evidence=NP_001148465.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J013044P16;TENOR=Os07t0510400-02
Chr07	irgsp1_rep	five_prime_UTR	19456120	19456123	.	-	.	Parent=Os07t0510400-02
Chr07	irgsp1_rep	CDS	19454671	19456119	.	-	0	Parent=Os07t0510400-02
Chr07	irgsp1_rep	three_prime_UTR	19454526	19454670	.	-	.	Parent=Os07t0510400-02
Chr07	irgsp1_rep	mRNA	19462349	19464260	.	-	.	ID=Os07t0510500-01;Name=Os07t0510500-01;Locus_id=Os07g0510500;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK068586 (DDBJ%2C Best hit);ORF_evidence=NP_001148465.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J013154E03;Expression=AK068586;TENOR=Os07t0510500-01;KEGG=Os07t0510500-01
Chr07	irgsp1_rep	five_prime_UTR	19464035	19464260	.	-	.	Parent=Os07t0510500-01
Chr07	irgsp1_rep	CDS	19462577	19464034	.	-	0	Parent=Os07t0510500-01
Chr07	irgsp1_rep	three_prime_UTR	19462349	19462576	.	-	.	Parent=Os07t0510500-01
Chr07	irgsp1_rep	mRNA	19462598	19464230	.	+	.	ID=Os07t0510600-01;Name=Os07t0510600-01;Locus_id=Os07g0510600;Note=Hypothetical protein.;Transcript_evidence=AK105478 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-127-A09;TENOR=Os07t0510600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	19462598	19464211	.	+	0	Parent=Os07t0510600-01
Chr07	irgsp1_rep	three_prime_UTR	19464212	19464230	.	+	.	Parent=Os07t0510600-01
Chr07	irgsp1_rep	mRNA	19473293	19474053	.	-	.	ID=Os07t0510800-02;Name=Os07t0510800-02;Locus_id=Os07g0510800;Note=Hypothetical conserved gene.;Transcript_evidence=AK063640 (DDBJ%2C Best hit);ORF_evidence=Q6Z4A4 (UniProt);NIAS_FLcDNA=001-118-G08;Expression=AK063640;TENOR=Os07t0510800-02;KEGG=Os07t0510800-02
Chr07	irgsp1_rep	five_prime_UTR	19473806	19474053	.	-	.	Parent=Os07t0510800-02
Chr07	irgsp1_rep	CDS	19473593	19473805	.	-	0	Parent=Os07t0510800-02
Chr07	irgsp1_rep	three_prime_UTR	19473293	19473592	.	-	.	Parent=Os07t0510800-02
Chr07	irgsp1_rep	mRNA	19491973	19492375	.	+	.	ID=Os07t0510833-00;Name=Os07t0510833-00;Locus_id=Os07g0510833;Note=Similar to L-ascorbate oxidase.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001152000.1 (RefSeq);GO=Molecular Function: copper ion binding (GO:0005507);InterPro=Cupredoxin (IPR008972),Multicopper oxidase%2C type 3 (IPR011707);TENOR=Os07t0510833-00
Chr07	irgsp1_rep	CDS	19491973	19492116	.	+	0	Parent=Os07t0510833-00
Chr07	irgsp1_rep	CDS	19492217	19492375	.	+	0	Parent=Os07t0510833-00
Chr07	irgsp1_rep	mRNA	19492215	19496444	.	-	.	ID=Os07t0510866-00;Name=Os07t0510866-00;Locus_id=Os07g0510866;Note=Hypothetical protein.;Transcript_evidence=BT086104 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0510866-00
Chr07	irgsp1_rep	CDS	19496166	19496444	.	-	0	Parent=Os07t0510866-00
Chr07	irgsp1_rep	three_prime_UTR	19495608	19496165	.	-	.	Parent=Os07t0510866-00
Chr07	irgsp1_rep	three_prime_UTR	19492215	19492335	.	-	.	Parent=Os07t0510866-00
Chr07	irgsp1_rep	mRNA	19495589	19498889	.	+	.	ID=Os07t0510900-01;Name=Os07t0510900-01;Locus_id=Os07g0510900;Note=Similar to L-ascorbate oxidase.;Transcript_evidence=AK241351 (DDBJ%2C Best hit);ORF_evidence=NP_001152000.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: copper ion binding (GO:0005507),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Multicopper oxidase%2C type 1 (IPR001117),Cupredoxin (IPR008972),Multicopper oxidase%2C type 2 (IPR011706),Multicopper oxidase%2C type 3 (IPR011707);NIAS_FLcDNA=J065148J21;TENOR=Os07t0510900-01;KEGG=Os07t0510900-01
Chr07	irgsp1_rep	CDS	19495589	19495867	.	+	0	Parent=Os07t0510900-01
Chr07	irgsp1_rep	CDS	19495977	19496083	.	+	0	Parent=Os07t0510900-01
Chr07	irgsp1_rep	CDS	19496255	19496596	.	+	1	Parent=Os07t0510900-01
Chr07	irgsp1_rep	CDS	19496905	19497279	.	+	1	Parent=Os07t0510900-01
Chr07	irgsp1_rep	CDS	19497378	19497456	.	+	1	Parent=Os07t0510900-01
Chr07	irgsp1_rep	CDS	19498324	19498536	.	+	0	Parent=Os07t0510900-01
Chr07	irgsp1_rep	three_prime_UTR	19498537	19498889	.	+	.	Parent=Os07t0510900-01
Chr07	irgsp1_rep	mRNA	19500833	19505155	.	+	.	ID=Os07t0511000-01;Name=Os07t0511000-01;Locus_id=Os07g0511000;Note=Conserved hypothetical protein.;Transcript_evidence=AK070461 (DDBJ%2C Best hit);ORF_evidence=B8B6P7 (UniProt);NIAS_FLcDNA=J023050A04;Expression=AK070461;TENOR=Os07t0511000-01;KEGG=Os07t0511000-01
Chr07	irgsp1_rep	five_prime_UTR	19500833	19500945	.	+	.	Parent=Os07t0511000-01
Chr07	irgsp1_rep	CDS	19500946	19501096	.	+	0	Parent=Os07t0511000-01
Chr07	irgsp1_rep	CDS	19501209	19501309	.	+	2	Parent=Os07t0511000-01
Chr07	irgsp1_rep	CDS	19501938	19502059	.	+	0	Parent=Os07t0511000-01
Chr07	irgsp1_rep	CDS	19502304	19502491	.	+	1	Parent=Os07t0511000-01
Chr07	irgsp1_rep	CDS	19502579	19502757	.	+	2	Parent=Os07t0511000-01
Chr07	irgsp1_rep	CDS	19502949	19503290	.	+	0	Parent=Os07t0511000-01
Chr07	irgsp1_rep	CDS	19503374	19503438	.	+	0	Parent=Os07t0511000-01
Chr07	irgsp1_rep	CDS	19503714	19503760	.	+	1	Parent=Os07t0511000-01
Chr07	irgsp1_rep	CDS	19503836	19503982	.	+	2	Parent=Os07t0511000-01
Chr07	irgsp1_rep	CDS	19504065	19504152	.	+	2	Parent=Os07t0511000-01
Chr07	irgsp1_rep	CDS	19504232	19504301	.	+	1	Parent=Os07t0511000-01
Chr07	irgsp1_rep	CDS	19504431	19504571	.	+	0	Parent=Os07t0511000-01
Chr07	irgsp1_rep	CDS	19504651	19505010	.	+	0	Parent=Os07t0511000-01
Chr07	irgsp1_rep	three_prime_UTR	19505011	19505155	.	+	.	Parent=Os07t0511000-01
Chr07	irgsp1_rep	mRNA	19515060	19516021	.	+	.	ID=Os07t0511100-00;Name=Os07t0511100-00;Locus_id=Os07g0511100;Note=Hypothetical protein.;Transcript_evidence=AK358771 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0511100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	19515060	19515061	.	+	.	Parent=Os07t0511100-00
Chr07	irgsp1_rep	CDS	19515062	19516021	.	+	0	Parent=Os07t0511100-00
Chr07	irgsp1_rep	mRNA	19529787	19530095	.	-	.	ID=Os07t0511201-00;Name=Os07t0511201-00;Locus_id=Os07g0511201;Note=Hypothetical protein.;Transcript_evidence=AY536124 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0511201-00
Chr07	irgsp1_rep	CDS	19529787	19530095	.	-	0	Parent=Os07t0511201-00
Chr07	irgsp1_rep	mRNA	19533397	19533696	.	-	.	ID=Os07t0511301-00;Name=Os07t0511301-00;Locus_id=Os07g0511301;Note=Hypothetical protein.;Transcript_evidence=AY536124 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0511301-00
Chr07	irgsp1_rep	five_prime_UTR	19533696	19533696	.	-	.	Parent=Os07t0511301-00
Chr07	irgsp1_rep	CDS	19533397	19533695	.	-	0	Parent=Os07t0511301-00
Chr07	irgsp1_rep	mRNA	19533865	19534577	.	+	.	ID=Os07t0511400-01;Name=Os07t0511400-01;Locus_id=Os07g0511400;Note=Hypothetical protein.;Transcript_evidence=AK108619 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-147-C05;Oryzabase=22561;TENOR=Os07t0511400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	19533865	19534278	.	+	0	Parent=Os07t0511400-01
Chr07	irgsp1_rep	three_prime_UTR	19534279	19534577	.	+	.	Parent=Os07t0511400-01
Chr07	irgsp1_rep	mRNA	19538543	19545779	.	+	.	ID=Os07t0511500-01;Name=Os07t0511500-01;Locus_id=Os07g0511500;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK066772 (DDBJ%2C Best hit);ORF_evidence=NP_172004.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: helicase activity (GO:0004386),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: zinc ion binding (GO:0008270);InterPro=SNF2-related (IPR000330),Helicase%2C C-terminal (IPR001650),Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),DEAD-like helicase (IPR014001),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J013084I15;Expression=AK066772;TENOR=Os07t0511500-01;KEGG=Os07t0511500-01
Chr07	irgsp1_rep	five_prime_UTR	19538543	19538796	.	+	.	Parent=Os07t0511500-01
Chr07	irgsp1_rep	CDS	19538797	19538821	.	+	0	Parent=Os07t0511500-01
Chr07	irgsp1_rep	CDS	19538902	19538907	.	+	2	Parent=Os07t0511500-01
Chr07	irgsp1_rep	CDS	19539589	19540046	.	+	2	Parent=Os07t0511500-01
Chr07	irgsp1_rep	CDS	19540933	19541055	.	+	0	Parent=Os07t0511500-01
Chr07	irgsp1_rep	CDS	19541132	19541205	.	+	0	Parent=Os07t0511500-01
Chr07	irgsp1_rep	CDS	19541465	19541525	.	+	1	Parent=Os07t0511500-01
Chr07	irgsp1_rep	CDS	19541617	19541763	.	+	0	Parent=Os07t0511500-01
Chr07	irgsp1_rep	CDS	19541864	19541949	.	+	0	Parent=Os07t0511500-01
Chr07	irgsp1_rep	CDS	19542374	19542443	.	+	1	Parent=Os07t0511500-01
Chr07	irgsp1_rep	CDS	19542605	19542733	.	+	0	Parent=Os07t0511500-01
Chr07	irgsp1_rep	CDS	19542833	19543060	.	+	0	Parent=Os07t0511500-01
Chr07	irgsp1_rep	CDS	19544327	19544431	.	+	0	Parent=Os07t0511500-01
Chr07	irgsp1_rep	CDS	19544516	19544668	.	+	0	Parent=Os07t0511500-01
Chr07	irgsp1_rep	CDS	19544794	19544882	.	+	0	Parent=Os07t0511500-01
Chr07	irgsp1_rep	CDS	19545262	19545342	.	+	1	Parent=Os07t0511500-01
Chr07	irgsp1_rep	CDS	19545458	19545530	.	+	1	Parent=Os07t0511500-01
Chr07	irgsp1_rep	three_prime_UTR	19545531	19545779	.	+	.	Parent=Os07t0511500-01
Chr07	irgsp1_rep	mRNA	19544575	19545805	.	+	.	ID=Os07t0511500-02;Name=Os07t0511500-02;Locus_id=Os07g0511500;Note=Similar to Chromatin remodeling complex subunit.;Transcript_evidence=AK119665 (DDBJ%2C Best hit);ORF_evidence=XP_002320469.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524);InterPro=Helicase%2C C-terminal (IPR001650);NIAS_FLcDNA=002-144-D03;Expression=AK119665;TENOR=Os07t0511500-02;KEGG=Os07t0511500-02
Chr07	irgsp1_rep	five_prime_UTR	19544575	19544575	.	+	.	Parent=Os07t0511500-02
Chr07	irgsp1_rep	CDS	19544576	19544668	.	+	0	Parent=Os07t0511500-02
Chr07	irgsp1_rep	CDS	19544794	19544882	.	+	0	Parent=Os07t0511500-02
Chr07	irgsp1_rep	CDS	19545262	19545342	.	+	1	Parent=Os07t0511500-02
Chr07	irgsp1_rep	CDS	19545458	19545530	.	+	1	Parent=Os07t0511500-02
Chr07	irgsp1_rep	three_prime_UTR	19545531	19545805	.	+	.	Parent=Os07t0511500-02
Chr07	irgsp1_rep	mRNA	19593342	19595214	.	+	.	ID=Os07t0511900-01;Name=Os07t0511900-01;Locus_id=Os07g0511900;Note=Conserved hypothetical protein.;Transcript_evidence=AK060218 (DDBJ%2C Best hit);ORF_evidence=B9FXG8 (UniProt);NIAS_FLcDNA=001-002-E04;TENOR=Os07t0511900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	19593342	19593343	.	+	.	Parent=Os07t0511900-01
Chr07	irgsp1_rep	CDS	19593344	19594582	.	+	0	Parent=Os07t0511900-01
Chr07	irgsp1_rep	three_prime_UTR	19594583	19595214	.	+	.	Parent=Os07t0511900-01
Chr07	irgsp1_rep	mRNA	19598507	19609045	.	-	.	ID=Os07t0512000-01;Name=Os07t0512000-01;Locus_id=Os07g0512000;Note=Prephenate dehydratase domain containing protein.;Transcript_evidence=AK108133 (DDBJ%2C Best hit);ORF_evidence=B8B6L5 (UniProt);GO=Biological Process: L-phenylalanine biosynthetic process (GO:0009094),Molecular Function: prephenate dehydratase activity (GO:0004664);InterPro=Prephenate dehydratase (IPR001086);NIAS_FLcDNA=002-139-D12;TENOR=Os07t0512000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	19609044	19609045	.	-	.	Parent=Os07t0512000-01
Chr07	irgsp1_rep	CDS	19608824	19609043	.	-	0	Parent=Os07t0512000-01
Chr07	irgsp1_rep	CDS	19600631	19600695	.	-	2	Parent=Os07t0512000-01
Chr07	irgsp1_rep	CDS	19600454	19600546	.	-	0	Parent=Os07t0512000-01
Chr07	irgsp1_rep	CDS	19600166	19600366	.	-	0	Parent=Os07t0512000-01
Chr07	irgsp1_rep	CDS	19599864	19599944	.	-	0	Parent=Os07t0512000-01
Chr07	irgsp1_rep	CDS	19599691	19599786	.	-	0	Parent=Os07t0512000-01
Chr07	irgsp1_rep	CDS	19599191	19599268	.	-	0	Parent=Os07t0512000-01
Chr07	irgsp1_rep	CDS	19598853	19598951	.	-	0	Parent=Os07t0512000-01
Chr07	irgsp1_rep	three_prime_UTR	19598786	19598852	.	-	.	Parent=Os07t0512000-01
Chr07	irgsp1_rep	three_prime_UTR	19598507	19598675	.	-	.	Parent=Os07t0512000-01
Chr07	irgsp1_rep	mRNA	19614348	19617474	.	-	.	ID=Os07t0512100-01;Name=Os07t0512100-01;Locus_id=Os07g0512100;Note=Similar to protein binding protein.;Transcript_evidence=AK288064 (DDBJ%2C Best hit);ORF_evidence=NP_001152281.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683),Protein of unknown function DUF3424 (IPR021832);NIAS_FLcDNA=J075155J06;TENOR=Os07t0512100-01;KEGG=Os07t0512100-01
Chr07	irgsp1_rep	five_prime_UTR	19617326	19617474	.	-	.	Parent=Os07t0512100-01
Chr07	irgsp1_rep	CDS	19615832	19617325	.	-	0	Parent=Os07t0512100-01
Chr07	irgsp1_rep	CDS	19614657	19615004	.	-	0	Parent=Os07t0512100-01
Chr07	irgsp1_rep	three_prime_UTR	19614348	19614656	.	-	.	Parent=Os07t0512100-01
Chr07	irgsp1_rep	mRNA	19614574	19617355	.	+	.	ID=Os07t0512150-00;Name=Os07t0512150-00;Locus_id=Os07g0512150;Note=Hypothetical protein.;Transcript_evidence=tplb0051b17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0512150-00
Chr07	irgsp1_rep	five_prime_UTR	19614574	19614981	.	+	.	Parent=Os07t0512150-00
Chr07	irgsp1_rep	five_prime_UTR	19615807	19615807	.	+	.	Parent=Os07t0512150-00
Chr07	irgsp1_rep	CDS	19615808	19616440	.	+	0	Parent=Os07t0512150-00
Chr07	irgsp1_rep	three_prime_UTR	19616441	19617355	.	+	.	Parent=Os07t0512150-00
Chr07	irgsp1_rep	mRNA	19625525	19628225	.	-	.	ID=Os07t0512200-01;Name=Os07t0512200-01;Locus_id=Os07g0512200;RAP-DB Gene Symbol Synonym(s)=OsATG8a;RAP-DB Gene Name Synonym(s)=autophagy 8a;CGSNL Gene Symbol=ATG8;CGSNL Gene Name=AUTOPHAGY ASSOCIATED GENE 8;Oryzabase Gene Symbol Synonym(s)=Atg8%2C OsAtg8%2C APG8%2C OsATG8a%2C Atg8a;Oryzabase Gene Name Synonym(s)=autophagy 8%2C autophagy 8a%2C AUTOPHAGY ASSOCIATED GENE 8A%2C OsAuTophaGy8a%2C AUTOPHAGY RELATED8a;Note=Core component of an autophagy gene%2C Nitrogen use efficiency and yield;Transcript_evidence=AK059939;ORF_evidence=Q69RC4;InterPro=Ubiquitin-like domain superfamily (IPR029071),Autophagy protein Atg8 ubiquitin-like (IPR004241);NIAS_FLcDNA=006-210-E03;Manual Curation=September 3%2C 2019;Literature_PMID=31134120;Oryzabase=9648;Expression=AK059939;TENOR=Os07t0512200-01;KEGG=Os07t0512200-01;Subcellular location=cytoplasm (GO:0005737)
Chr07	irgsp1_rep	five_prime_UTR	19628106	19628225	.	-	.	Parent=Os07t0512200-01
Chr07	irgsp1_rep	five_prime_UTR	19627913	19627919	.	-	.	Parent=Os07t0512200-01
Chr07	irgsp1_rep	CDS	19627876	19627912	.	-	0	Parent=Os07t0512200-01
Chr07	irgsp1_rep	CDS	19626830	19626885	.	-	2	Parent=Os07t0512200-01
Chr07	irgsp1_rep	CDS	19626688	19626740	.	-	0	Parent=Os07t0512200-01
Chr07	irgsp1_rep	CDS	19626169	19626287	.	-	1	Parent=Os07t0512200-01
Chr07	irgsp1_rep	CDS	19625989	19626083	.	-	2	Parent=Os07t0512200-01
Chr07	irgsp1_rep	three_prime_UTR	19625525	19625988	.	-	.	Parent=Os07t0512200-01
Chr07	irgsp1_rep	mRNA	19631206	19631682	.	-	.	ID=Os07t0512250-01;Name=Os07t0512250-01;Locus_id=Os07g0512250;RAP-DB Gene Symbol Synonym(s)=OsS40-16;RAP-DB Gene Name Synonym(s)=S40 protein 16;CGSNL Gene Symbol=S40-16;CGSNL Gene Name=S40 PROTEIN 16;Oryzabase Gene Symbol Synonym(s)=OsS40-16;Oryzabase Gene Name Synonym(s)=S40 protein 16;Note=A member of S40 gene family%2C Leaf senescence;Transcript_evidence=BT063972 (maize);ORF_evidence=Q84NW7;InterPro=Senescence regulator S40 (IPR007608);Manual Curation=November 12%2C 2019;Literature_PMID=31046677;Oryzabase=22086;TENOR=Os07t0512250-00;KEGG=Os07t0512250-00;Subcellular location=cytoplasm (GO:0005737)
Chr07	irgsp1_rep	CDS	19631206	19631682	.	-	0	Parent=Os07t0512250-01
Chr07	irgsp1_rep	mRNA	19656083	19657560	.	-	.	ID=Os07t0513000-01;Name=Os07t0513000-01;Locus_id=Os07g0513000;Oryzabase Gene Name Synonym(s)=ATP synthase g-chain%2C ATP synthase gamma chain%2C F-type ATPase gamma;Note=Similar to ATP synthase gamma chain%2C chloroplast (EC 3.6.1.34) (Fragment).;Transcript_evidence=AK064835 (DDBJ%2C Best hit);ORF_evidence=A2YLT1 (UniProt);GO=Biological Process: ATP synthesis coupled proton transport (GO:0015986),Cellular Component: proton-transporting ATP synthase complex%2C catalytic core F(1) (GO:0045261),Molecular Function: hydrogen ion transporting ATP synthase activity%2C rotational mechanism (GO:0046933),Molecular Function: proton-transporting ATPase activity%2C rotational mechanism (GO:0046961);InterPro=ATPase%2C F1 complex%2C gamma subunit (IPR000131),ATPase%2C F1 complex%2C gamma subunit conserved site (IPR023632),ATPase%2C F1 complex%2C gamma subunit domain (IPR023633);NIAS_FLcDNA=J013000F20;Oryzabase=12449;Expression=AK064835;TENOR=Os07t0513000-01;KEGG=Os07t0513000-01 (EC:3.6.1.34%2C EC:3.6.3.14)
Chr07	irgsp1_rep	five_prime_UTR	19657411	19657560	.	-	.	Parent=Os07t0513000-01
Chr07	irgsp1_rep	CDS	19656334	19657410	.	-	0	Parent=Os07t0513000-01
Chr07	irgsp1_rep	three_prime_UTR	19656083	19656333	.	-	.	Parent=Os07t0513000-01
Chr07	irgsp1_rep	mRNA	19655991	19657458	.	-	.	ID=Os07t0513000-02;Name=Os07t0513000-02;Locus_id=Os07g0513000;Oryzabase Gene Name Synonym(s)=ATP synthase g-chain%2C ATP synthase gamma chain%2C F-type ATPase gamma;Note=Similar to ATP synthase gamma chain%2C chloroplast (EC 3.6.1.34) (Fragment).;Transcript_evidence=AK072104 (DDBJ%2C Best hit);ORF_evidence=A2YLT1 (UniProt);GO=Biological Process: ATP synthesis coupled proton transport (GO:0015986),Cellular Component: proton-transporting ATP synthase complex%2C catalytic core F(1) (GO:0045261),Molecular Function: hydrogen ion transporting ATP synthase activity%2C rotational mechanism (GO:0046933),Molecular Function: proton-transporting ATPase activity%2C rotational mechanism (GO:0046961);InterPro=ATPase%2C F1 complex%2C gamma subunit (IPR000131),ATPase%2C F1 complex%2C gamma subunit conserved site (IPR023632),ATPase%2C F1 complex%2C gamma subunit domain (IPR023633);NIAS_FLcDNA=J013116B21;Oryzabase=12449;Expression=AK072104;TENOR=Os07t0513000-02;KEGG=Os07t0513000-02 (EC:3.6.1.34%2C EC:3.6.3.14)
Chr07	irgsp1_rep	five_prime_UTR	19657411	19657458	.	-	.	Parent=Os07t0513000-02
Chr07	irgsp1_rep	CDS	19656334	19657410	.	-	0	Parent=Os07t0513000-02
Chr07	irgsp1_rep	three_prime_UTR	19655991	19656333	.	-	.	Parent=Os07t0513000-02
Chr07	irgsp1_rep	mRNA	19658119	19668106	.	-	.	ID=Os07t0513100-01;Name=Os07t0513100-01;Locus_id=Os07g0513100;Note=Similar to RRP6-like protein 3.;Transcript_evidence=AK287487 (DDBJ%2C Best hit);ORF_evidence=NP_850189.5 (RefSeq);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Biological Process: cellular metabolic process (GO:0044237),Cellular Component: intracellular (GO:0005622),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: catalytic activity (GO:0003824),Molecular Function: 3'-5' exonuclease activity (GO:0008408);InterPro=Helicase/RNase D C-terminal%2C HRDC domain (IPR002121),3'-5' exonuclease (IPR002562),HRDC-like (IPR010997),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J043028D18;TENOR=Os07t0513100-01;KEGG=Os07t0513100-01
Chr07	irgsp1_rep	five_prime_UTR	19668085	19668106	.	-	.	Parent=Os07t0513100-01
Chr07	irgsp1_rep	CDS	19667766	19668084	.	-	0	Parent=Os07t0513100-01
Chr07	irgsp1_rep	CDS	19666622	19666863	.	-	2	Parent=Os07t0513100-01
Chr07	irgsp1_rep	CDS	19666443	19666541	.	-	0	Parent=Os07t0513100-01
Chr07	irgsp1_rep	CDS	19664675	19664758	.	-	0	Parent=Os07t0513100-01
Chr07	irgsp1_rep	CDS	19663808	19663894	.	-	0	Parent=Os07t0513100-01
Chr07	irgsp1_rep	CDS	19662660	19662780	.	-	0	Parent=Os07t0513100-01
Chr07	irgsp1_rep	CDS	19660803	19660981	.	-	2	Parent=Os07t0513100-01
Chr07	irgsp1_rep	CDS	19660689	19660727	.	-	0	Parent=Os07t0513100-01
Chr07	irgsp1_rep	CDS	19659949	19660457	.	-	0	Parent=Os07t0513100-01
Chr07	irgsp1_rep	CDS	19659365	19659863	.	-	1	Parent=Os07t0513100-01
Chr07	irgsp1_rep	CDS	19658526	19659208	.	-	0	Parent=Os07t0513100-01
Chr07	irgsp1_rep	CDS	19658222	19658324	.	-	1	Parent=Os07t0513100-01
Chr07	irgsp1_rep	three_prime_UTR	19658119	19658221	.	-	.	Parent=Os07t0513100-01
Chr07	irgsp1_rep	mRNA	19658521	19668078	.	+	.	ID=Os07t0513150-00;Name=Os07t0513150-00;Locus_id=Os07g0513150;Note=Hypothetical protein.;Transcript_evidence=tplb0046a06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0513150-00
Chr07	irgsp1_rep	five_prime_UTR	19658521	19658883	.	+	.	Parent=Os07t0513150-00
Chr07	irgsp1_rep	five_prime_UTR	19658936	19659193	.	+	.	Parent=Os07t0513150-00
Chr07	irgsp1_rep	five_prime_UTR	19659354	19659852	.	+	.	Parent=Os07t0513150-00
Chr07	irgsp1_rep	five_prime_UTR	19659941	19660467	.	+	.	Parent=Os07t0513150-00
Chr07	irgsp1_rep	five_prime_UTR	19660775	19660979	.	+	.	Parent=Os07t0513150-00
Chr07	irgsp1_rep	five_prime_UTR	19662653	19662780	.	+	.	Parent=Os07t0513150-00
Chr07	irgsp1_rep	five_prime_UTR	19663808	19663893	.	+	.	Parent=Os07t0513150-00
Chr07	irgsp1_rep	five_prime_UTR	19664674	19664769	.	+	.	Parent=Os07t0513150-00
Chr07	irgsp1_rep	five_prime_UTR	19666457	19666533	.	+	.	Parent=Os07t0513150-00
Chr07	irgsp1_rep	five_prime_UTR	19666618	19666839	.	+	.	Parent=Os07t0513150-00
Chr07	irgsp1_rep	CDS	19666840	19666865	.	+	0	Parent=Os07t0513150-00
Chr07	irgsp1_rep	CDS	19667772	19668078	.	+	1	Parent=Os07t0513150-00
Chr07	irgsp1_rep	mRNA	19668382	19683439	.	+	.	ID=Os07t0513200-01;Name=Os07t0513200-01;Locus_id=Os07g0513200;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK119451 (DDBJ%2C Best hit);ORF_evidence=B9FXH2 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-133-D09;Expression=AK119451;TENOR=Os07t0513200-01;KEGG=Os07t0513200-01
Chr07	irgsp1_rep	five_prime_UTR	19668382	19668477	.	+	.	Parent=Os07t0513200-01
Chr07	irgsp1_rep	CDS	19668478	19670742	.	+	0	Parent=Os07t0513200-01
Chr07	irgsp1_rep	three_prime_UTR	19670743	19670860	.	+	.	Parent=Os07t0513200-01
Chr07	irgsp1_rep	three_prime_UTR	19670963	19671055	.	+	.	Parent=Os07t0513200-01
Chr07	irgsp1_rep	three_prime_UTR	19671682	19671833	.	+	.	Parent=Os07t0513200-01
Chr07	irgsp1_rep	three_prime_UTR	19672047	19672181	.	+	.	Parent=Os07t0513200-01
Chr07	irgsp1_rep	three_prime_UTR	19672733	19672837	.	+	.	Parent=Os07t0513200-01
Chr07	irgsp1_rep	three_prime_UTR	19682653	19683439	.	+	.	Parent=Os07t0513200-01
Chr07	irgsp1_rep	mRNA	19668382	19673208	.	+	.	ID=Os07t0513200-02;Name=Os07t0513200-02;Locus_id=Os07g0513200;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK101410 (DDBJ%2C Best hit);ORF_evidence=B9FXH2 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033037I20;Expression=AK101410;TENOR=Os07t0513200-02;KEGG=Os07t0513200-02
Chr07	irgsp1_rep	five_prime_UTR	19668382	19668477	.	+	.	Parent=Os07t0513200-02
Chr07	irgsp1_rep	CDS	19668478	19670742	.	+	0	Parent=Os07t0513200-02
Chr07	irgsp1_rep	three_prime_UTR	19670743	19670860	.	+	.	Parent=Os07t0513200-02
Chr07	irgsp1_rep	three_prime_UTR	19670963	19671055	.	+	.	Parent=Os07t0513200-02
Chr07	irgsp1_rep	three_prime_UTR	19672047	19672181	.	+	.	Parent=Os07t0513200-02
Chr07	irgsp1_rep	three_prime_UTR	19672733	19673208	.	+	.	Parent=Os07t0513200-02
Chr07	irgsp1_rep	mRNA	19668383	19670520	.	+	.	ID=Os07t0513200-03;Name=Os07t0513200-03;Locus_id=Os07g0513200;Note=Hypothetical conserved gene.;Transcript_evidence=AK106227 (DDBJ%2C Best hit);ORF_evidence=B9FXH2 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-100-A09;Expression=AK106227;TENOR=Os07t0513200-03;KEGG=Os07t0513200-03
Chr07	irgsp1_rep	five_prime_UTR	19668383	19668477	.	+	.	Parent=Os07t0513200-03
Chr07	irgsp1_rep	CDS	19668478	19670520	.	+	0	Parent=Os07t0513200-03
Chr07	irgsp1_rep	mRNA	19683316	19684639	.	-	.	ID=Os07t0513400-01;Name=Os07t0513400-01;Locus_id=Os07g0513400;Oryzabase Gene Symbol Synonym(s)=OsSTA197;Note=Protein of unknown function DUF1677%2C Oryza sativa family protein.;Transcript_evidence=AK106433 (DDBJ%2C Best hit);ORF_evidence=Q84NV7 (UniProt);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);NIAS_FLcDNA=002-103-C10;Oryzabase=19475;Expression=AK106433;TENOR=Os07t0513400-01;KEGG=Os07t0513400-01
Chr07	irgsp1_rep	five_prime_UTR	19684633	19684639	.	-	.	Parent=Os07t0513400-01
Chr07	irgsp1_rep	CDS	19683454	19684632	.	-	0	Parent=Os07t0513400-01
Chr07	irgsp1_rep	three_prime_UTR	19683316	19683453	.	-	.	Parent=Os07t0513400-01
Chr07	irgsp1_rep	mRNA	19694000	19695205	.	+	.	ID=Os07t0513600-00;Name=Os07t0513600-00;Locus_id=Os07g0513600;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001059772.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Chaperone DnaJ%2C C-terminal (IPR002939),HSP40/DnaJ peptide-binding (IPR008971);TENOR=Os07t0513600-00;KEGG=Os07t0513600-00
Chr07	irgsp1_rep	CDS	19694000	19694380	.	+	0	Parent=Os07t0513600-00
Chr07	irgsp1_rep	CDS	19694476	19694633	.	+	0	Parent=Os07t0513600-00
Chr07	irgsp1_rep	CDS	19694773	19695205	.	+	1	Parent=Os07t0513600-00
Chr07	irgsp1_rep	mRNA	19737967	19742856	.	-	.	ID=Os07t0514400-00;Name=Os07t0514400-00;Locus_id=Os07g0514400;Note=Domain of unknown function DUF629 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001059773.2 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Domain of unknown function DUF629 (IPR006865),Tetratricopeptide-like helical (IPR011990);TENOR=Os07t0514400-00;KEGG=Os07t0514400-00
Chr07	irgsp1_rep	CDS	19741225	19742856	.	-	0	Parent=Os07t0514400-00
Chr07	irgsp1_rep	CDS	19740990	19741118	.	-	0	Parent=Os07t0514400-00
Chr07	irgsp1_rep	CDS	19740815	19740907	.	-	0	Parent=Os07t0514400-00
Chr07	irgsp1_rep	CDS	19740540	19740734	.	-	0	Parent=Os07t0514400-00
Chr07	irgsp1_rep	CDS	19739561	19739830	.	-	0	Parent=Os07t0514400-00
Chr07	irgsp1_rep	CDS	19739370	19739467	.	-	0	Parent=Os07t0514400-00
Chr07	irgsp1_rep	CDS	19738166	19738262	.	-	1	Parent=Os07t0514400-00
Chr07	irgsp1_rep	CDS	19737967	19738077	.	-	0	Parent=Os07t0514400-00
Chr07	irgsp1_rep	mRNA	19738256	19740785	.	+	.	ID=Os07t0514550-01;Name=Os07t0514550-01;Locus_id=Os07g0514550;Note=Hypothetical gene.;Transcript_evidence=AK288659 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090057K06;TENOR=Os07t0514550-01;KEGG=Os07t0514550-01
Chr07	irgsp1_rep	five_prime_UTR	19738256	19739618	.	+	.	Parent=Os07t0514550-01
Chr07	irgsp1_rep	CDS	19739619	19739834	.	+	0	Parent=Os07t0514550-01
Chr07	irgsp1_rep	three_prime_UTR	19739835	19740785	.	+	.	Parent=Os07t0514550-01
Chr07	irgsp1_rep	mRNA	19768343	19768860	.	+	.	ID=Os07t0515000-01;Name=Os07t0515000-01;Locus_id=Os07g0515000;Note=Similar to Met-10+ like family protein / kelch repeat-containing protein.;Transcript_evidence=AK242444 (DDBJ%2C Best hit);ORF_evidence=NP_567268.2 (RefSeq);NIAS_FLcDNA=J080094I01;TENOR=Os07t0515000-01;KEGG=Os07t0515000-01
Chr07	irgsp1_rep	five_prime_UTR	19768343	19768343	.	+	.	Parent=Os07t0515000-01
Chr07	irgsp1_rep	CDS	19768344	19768377	.	+	0	Parent=Os07t0515000-01
Chr07	irgsp1_rep	CDS	19768475	19768575	.	+	2	Parent=Os07t0515000-01
Chr07	irgsp1_rep	three_prime_UTR	19768576	19768860	.	+	.	Parent=Os07t0515000-01
Chr07	irgsp1_rep	mRNA	19769016	19774445	.	-	.	ID=Os07t0515100-01;Name=Os07t0515100-01;Locus_id=Os07g0515100;CGSNL Gene Symbol=CDPK19;CGSNL Gene Name=CALCIUM-DEPENDENT PROTEIN KINASE 19;Oryzabase Gene Symbol Synonym(s)=OsCDPK19%2C OsCPK19%2C OsCDPK2%2C CPK2%2C CDPK2;Oryzabase Gene Name Synonym(s)=calcium-dependent protein kinase%2C calcium-dependent protein kinase 2;Note=Calcium-dependent protein kinase%2C isoform 2 (EC 2.7.1.-) (CDPK 2).;Transcript_evidence=AK069341 (DDBJ%2C Best hit);ORF_evidence=P53683 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Calcium-binding EF-hand (IPR002048),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),EF-hand-like domain (IPR011992),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249),Tyrosine-protein kinase%2C catalytic domain (IPR020635),Calcium/calmodulin-dependent/calcium-dependent protein kinase (IPR020636);NIAS_FLcDNA=J023012L07;Oryzabase=8070;Expression=AK069341;TENOR=Os07t0515100-01;KEGG=Os07t0515100-01 (EC:2.7.11.17)
Chr07	irgsp1_rep	five_prime_UTR	19774042	19774445	.	-	.	Parent=Os07t0515100-01
Chr07	irgsp1_rep	five_prime_UTR	19773007	19773072	.	-	.	Parent=Os07t0515100-01
Chr07	irgsp1_rep	CDS	19772289	19773006	.	-	0	Parent=Os07t0515100-01
Chr07	irgsp1_rep	CDS	19770661	19770804	.	-	2	Parent=Os07t0515100-01
Chr07	irgsp1_rep	CDS	19770399	19770551	.	-	2	Parent=Os07t0515100-01
Chr07	irgsp1_rep	CDS	19770202	19770314	.	-	2	Parent=Os07t0515100-01
Chr07	irgsp1_rep	CDS	19769964	19770131	.	-	0	Parent=Os07t0515100-01
Chr07	irgsp1_rep	CDS	19769749	19769876	.	-	0	Parent=Os07t0515100-01
Chr07	irgsp1_rep	CDS	19769422	19769521	.	-	1	Parent=Os07t0515100-01
Chr07	irgsp1_rep	CDS	19769256	19769333	.	-	0	Parent=Os07t0515100-01
Chr07	irgsp1_rep	three_prime_UTR	19769016	19769255	.	-	.	Parent=Os07t0515100-01
Chr07	irgsp1_rep	mRNA	19769005	19773487	.	-	.	ID=Os07t0515100-02;Name=Os07t0515100-02;Locus_id=Os07g0515100;CGSNL Gene Symbol=CDPK19;CGSNL Gene Name=CALCIUM-DEPENDENT PROTEIN KINASE 19;Oryzabase Gene Symbol Synonym(s)=OsCDPK19%2C OsCPK19%2C OsCDPK2%2C CPK2%2C CDPK2;Oryzabase Gene Name Synonym(s)=calcium-dependent protein kinase%2C calcium-dependent protein kinase 2;Note=Calcium-dependent protein kinase%2C isoform 2 (EC 2.7.1.-) (CDPK 2).;Transcript_evidence=AK074028 (DDBJ%2C Best hit);ORF_evidence=P53683 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Calcium-binding EF-hand (IPR002048),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),EF-hand-like domain (IPR011992),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249),Tyrosine-protein kinase%2C catalytic domain (IPR020635),Calcium/calmodulin-dependent/calcium-dependent protein kinase (IPR020636);NIAS_FLcDNA=J033075G20;Oryzabase=8070;Expression=AK074028;TENOR=Os07t0515100-02;KEGG=Os07t0515100-02 (EC:2.7.11.17)
Chr07	irgsp1_rep	five_prime_UTR	19773364	19773487	.	-	.	Parent=Os07t0515100-02
Chr07	irgsp1_rep	five_prime_UTR	19773007	19773072	.	-	.	Parent=Os07t0515100-02
Chr07	irgsp1_rep	CDS	19772289	19773006	.	-	0	Parent=Os07t0515100-02
Chr07	irgsp1_rep	CDS	19770661	19770804	.	-	2	Parent=Os07t0515100-02
Chr07	irgsp1_rep	CDS	19770399	19770551	.	-	2	Parent=Os07t0515100-02
Chr07	irgsp1_rep	CDS	19770202	19770314	.	-	2	Parent=Os07t0515100-02
Chr07	irgsp1_rep	CDS	19769964	19770131	.	-	0	Parent=Os07t0515100-02
Chr07	irgsp1_rep	CDS	19769749	19769876	.	-	0	Parent=Os07t0515100-02
Chr07	irgsp1_rep	CDS	19769422	19769521	.	-	1	Parent=Os07t0515100-02
Chr07	irgsp1_rep	CDS	19769256	19769333	.	-	0	Parent=Os07t0515100-02
Chr07	irgsp1_rep	three_prime_UTR	19769005	19769255	.	-	.	Parent=Os07t0515100-02
Chr07	irgsp1_rep	mRNA	19769421	19772772	.	+	.	ID=Os07t0515150-00;Name=Os07t0515150-00;Locus_id=Os07g0515150;Note=Hypothetical protein.;Transcript_evidence=tplb0061j19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0515150-00
Chr07	irgsp1_rep	five_prime_UTR	19769421	19769512	.	+	.	Parent=Os07t0515150-00
Chr07	irgsp1_rep	five_prime_UTR	19769740	19769789	.	+	.	Parent=Os07t0515150-00
Chr07	irgsp1_rep	CDS	19769790	19769864	.	+	0	Parent=Os07t0515150-00
Chr07	irgsp1_rep	CDS	19769950	19770149	.	+	0	Parent=Os07t0515150-00
Chr07	irgsp1_rep	CDS	19770223	19770311	.	+	1	Parent=Os07t0515150-00
Chr07	irgsp1_rep	CDS	19770394	19770419	.	+	2	Parent=Os07t0515150-00
Chr07	irgsp1_rep	three_prime_UTR	19770420	19770553	.	+	.	Parent=Os07t0515150-00
Chr07	irgsp1_rep	three_prime_UTR	19770663	19770820	.	+	.	Parent=Os07t0515150-00
Chr07	irgsp1_rep	three_prime_UTR	19772309	19772772	.	+	.	Parent=Os07t0515150-00
Chr07	irgsp1_rep	mRNA	19779499	19782706	.	+	.	ID=Os07t0515200-01;Name=Os07t0515200-01;Locus_id=Os07g0515200;Note=Conserved hypothetical protein.;Transcript_evidence=AK110337 (DDBJ%2C Best hit);ORF_evidence=B8B6M2 (UniProt);NIAS_FLcDNA=002-164-F01;TENOR=Os07t0515200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	19779499	19780748	.	+	.	Parent=Os07t0515200-01
Chr07	irgsp1_rep	CDS	19780749	19782059	.	+	0	Parent=Os07t0515200-01
Chr07	irgsp1_rep	three_prime_UTR	19782150	19782706	.	+	.	Parent=Os07t0515200-01
Chr07	irgsp1_rep	mRNA	19827289	19833195	.	+	.	ID=Os07t0515700-01;Name=Os07t0515700-01;Locus_id=Os07g0515700;Note=Similar to cDNA%2C clone: J100054L12%2C full insert sequence.;Transcript_evidence=AK103117 (DDBJ%2C Best hit);ORF_evidence=B7FA83 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J033119G22;TENOR=Os07t0515700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	19827289	19827379	.	+	.	Parent=Os07t0515700-01
Chr07	irgsp1_rep	five_prime_UTR	19827464	19827653	.	+	.	Parent=Os07t0515700-01
Chr07	irgsp1_rep	CDS	19827654	19827689	.	+	0	Parent=Os07t0515700-01
Chr07	irgsp1_rep	CDS	19827803	19827877	.	+	0	Parent=Os07t0515700-01
Chr07	irgsp1_rep	CDS	19828526	19829023	.	+	0	Parent=Os07t0515700-01
Chr07	irgsp1_rep	CDS	19829477	19829842	.	+	0	Parent=Os07t0515700-01
Chr07	irgsp1_rep	CDS	19830215	19830306	.	+	0	Parent=Os07t0515700-01
Chr07	irgsp1_rep	CDS	19830405	19830451	.	+	1	Parent=Os07t0515700-01
Chr07	irgsp1_rep	CDS	19830532	19830593	.	+	2	Parent=Os07t0515700-01
Chr07	irgsp1_rep	CDS	19831750	19832061	.	+	0	Parent=Os07t0515700-01
Chr07	irgsp1_rep	three_prime_UTR	19832062	19832077	.	+	.	Parent=Os07t0515700-01
Chr07	irgsp1_rep	three_prime_UTR	19832933	19833195	.	+	.	Parent=Os07t0515700-01
Chr07	irgsp1_rep	mRNA	19840539	19846071	.	+	.	ID=Os07t0515900-00;Name=Os07t0515900-00;Locus_id=Os07g0515900;Note=Similar to cDNA%2C clone: J100054L12%2C full insert sequence.;Transcript_evidence=ab initio prediction;ORF_evidence=B7FA83 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);TENOR=Os07t0515900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	19840539	19840715	.	+	0	Parent=Os07t0515900-00
Chr07	irgsp1_rep	CDS	19840777	19840851	.	+	0	Parent=Os07t0515900-00
Chr07	irgsp1_rep	CDS	19841255	19841752	.	+	0	Parent=Os07t0515900-00
Chr07	irgsp1_rep	CDS	19842184	19842549	.	+	0	Parent=Os07t0515900-00
Chr07	irgsp1_rep	CDS	19845949	19846071	.	+	0	Parent=Os07t0515900-00
Chr07	irgsp1_rep	mRNA	19850984	19854472	.	+	.	ID=Os07t0516000-01;Name=Os07t0516000-01;Locus_id=Os07g0516000;Note=Neuraminidase domain containing protein.;Transcript_evidence=AK106685 (DDBJ%2C Best hit);ORF_evidence=NP_001078763.1 (RefSeq);InterPro=BNR repeat (IPR002860),Neuraminidase (IPR011040);NIAS_FLcDNA=002-114-C01;Expression=AK106685;TENOR=Os07t0516000-01;KEGG=Os07t0516000-01
Chr07	irgsp1_rep	five_prime_UTR	19850984	19851127	.	+	.	Parent=Os07t0516000-01
Chr07	irgsp1_rep	five_prime_UTR	19851863	19851928	.	+	.	Parent=Os07t0516000-01
Chr07	irgsp1_rep	CDS	19851929	19852122	.	+	0	Parent=Os07t0516000-01
Chr07	irgsp1_rep	CDS	19852198	19852399	.	+	1	Parent=Os07t0516000-01
Chr07	irgsp1_rep	CDS	19852481	19852567	.	+	0	Parent=Os07t0516000-01
Chr07	irgsp1_rep	CDS	19852652	19852779	.	+	0	Parent=Os07t0516000-01
Chr07	irgsp1_rep	CDS	19852911	19853005	.	+	1	Parent=Os07t0516000-01
Chr07	irgsp1_rep	CDS	19853219	19853298	.	+	2	Parent=Os07t0516000-01
Chr07	irgsp1_rep	CDS	19853394	19853619	.	+	0	Parent=Os07t0516000-01
Chr07	irgsp1_rep	CDS	19853839	19854062	.	+	2	Parent=Os07t0516000-01
Chr07	irgsp1_rep	CDS	19854172	19854210	.	+	0	Parent=Os07t0516000-01
Chr07	irgsp1_rep	three_prime_UTR	19854211	19854472	.	+	.	Parent=Os07t0516000-01
Chr07	irgsp1_rep	mRNA	19855404	19858195	.	+	.	ID=Os07t0516050-00;Name=Os07t0516050-00;Locus_id=Os07g0516050;Note=Similar to predicted protein.;Transcript_evidence=CT836059 (DDBJ%2C Best hit);ORF_evidence=NP_001078763.1 (RefSeq);InterPro=BNR repeat (IPR002860),Neuraminidase (IPR011040);TENOR=Os07t0516050-00;KEGG=Os07t0516050-00
Chr07	irgsp1_rep	five_prime_UTR	19855404	19855571	.	+	.	Parent=Os07t0516050-00
Chr07	irgsp1_rep	CDS	19855572	19855593	.	+	0	Parent=Os07t0516050-00
Chr07	irgsp1_rep	CDS	19856173	19856267	.	+	2	Parent=Os07t0516050-00
Chr07	irgsp1_rep	CDS	19856357	19856443	.	+	0	Parent=Os07t0516050-00
Chr07	irgsp1_rep	CDS	19856552	19856679	.	+	0	Parent=Os07t0516050-00
Chr07	irgsp1_rep	CDS	19856777	19856873	.	+	1	Parent=Os07t0516050-00
Chr07	irgsp1_rep	CDS	19856980	19857055	.	+	0	Parent=Os07t0516050-00
Chr07	irgsp1_rep	CDS	19857140	19857367	.	+	2	Parent=Os07t0516050-00
Chr07	irgsp1_rep	CDS	19857467	19857690	.	+	2	Parent=Os07t0516050-00
Chr07	irgsp1_rep	CDS	19857789	19857818	.	+	0	Parent=Os07t0516050-00
Chr07	irgsp1_rep	three_prime_UTR	19857819	19858195	.	+	.	Parent=Os07t0516050-00
Chr07	irgsp1_rep	mRNA	19859216	19860068	.	+	.	ID=Os07t0516100-00;Name=Os07t0516100-00;Locus_id=Os07g0516100;Oryzabase Gene Symbol Synonym(s)=OsPP2C63%2C PP2C63%2C OsPP96;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C63%2C protein phosphatase 2C 63%2C protein phosphatase 96;Note=Hypothetical conserved gene.;Transcript_evidence=tplb0011b20 (Wheat FLcDNA);ORF_evidence=A2YLU4 (UniProt);InterPro=Protein phosphatase 2C (IPR015655);Oryzabase=17936;TENOR=Os07t0516100-00;KEGG=Os07t0516100-00
Chr07	irgsp1_rep	five_prime_UTR	19859216	19859225	.	+	.	Parent=Os07t0516100-00
Chr07	irgsp1_rep	CDS	19859226	19859915	.	+	0	Parent=Os07t0516100-00
Chr07	irgsp1_rep	three_prime_UTR	19859916	19860068	.	+	.	Parent=Os07t0516100-00
Chr07	irgsp1_rep	mRNA	19861609	19864520	.	+	.	ID=Os07t0516200-01;Name=Os07t0516200-01;Locus_id=Os07g0516200;Note=Similar to Endoribonuclease%2C L-PSP family.;Transcript_evidence=AK061373 (DDBJ%2C Best hit);ORF_evidence=Q84UT6 (UniProt);InterPro=YjgF-like protein (IPR006056),Endoribonuclease L-PSP (IPR006175),Endoribonuclease L-PSP/chorismate mutase-like (IPR013813),YjgF-like protein%2C conserved site (IPR019897);NIAS_FLcDNA=006-304-F08;Expression=AK061373;TENOR=Os07t0516200-01;KEGG=Os07t0516200-01
Chr07	irgsp1_rep	five_prime_UTR	19861609	19861726	.	+	.	Parent=Os07t0516200-01
Chr07	irgsp1_rep	CDS	19861727	19861889	.	+	0	Parent=Os07t0516200-01
Chr07	irgsp1_rep	CDS	19862995	19863110	.	+	2	Parent=Os07t0516200-01
Chr07	irgsp1_rep	CDS	19863227	19863271	.	+	0	Parent=Os07t0516200-01
Chr07	irgsp1_rep	CDS	19863708	19863781	.	+	0	Parent=Os07t0516200-01
Chr07	irgsp1_rep	CDS	19863865	19863914	.	+	1	Parent=Os07t0516200-01
Chr07	irgsp1_rep	CDS	19864077	19864171	.	+	2	Parent=Os07t0516200-01
Chr07	irgsp1_rep	three_prime_UTR	19864172	19864520	.	+	.	Parent=Os07t0516200-01
Chr07	irgsp1_rep	mRNA	19862999	19864210	.	-	.	ID=Os07t0516250-00;Name=Os07t0516250-00;Locus_id=Os07g0516250;Note=Non-protein coding transcript.;Transcript_evidence=BT018946 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0516250-00
Chr07	irgsp1_rep	exon	19864023	19864210	.	-	.	Parent=Os07t0516250-00
Chr07	irgsp1_rep	exon	19863706	19863782	.	-	.	Parent=Os07t0516250-00
Chr07	irgsp1_rep	exon	19863215	19863263	.	-	.	Parent=Os07t0516250-00
Chr07	irgsp1_rep	exon	19862999	19863098	.	-	.	Parent=Os07t0516250-00
Chr07	irgsp1_rep	mRNA	19887349	19888283	.	-	.	ID=Os07t0516300-01;Name=Os07t0516300-01;Locus_id=Os07g0516300;RAP-DB Gene Symbol Synonym(s)=OsS40-15;RAP-DB Gene Name Synonym(s)=S40 protein 15;CGSNL Gene Symbol=S40-15;CGSNL Gene Name=S40 PROTEIN 15;Oryzabase Gene Symbol Synonym(s)=OsS40-15;Oryzabase Gene Name Synonym(s)=S40 protein 15;Note=A member of S40 gene family%2C Leaf senescence%2C Response to pathogen infection;Transcript_evidence=AK102726,AK069570;ORF_evidence=Q6Z2H5;InterPro=Senescence regulator S40 (IPR007608);NIAS_FLcDNA=J033105M03,J023025A03;Manual Curation=November 12%2C 2019;Literature_PMID=31046677;Oryzabase=22085;Expression=AK102726;TENOR=Os07t0516300-01;KEGG=Os07t0516300-01;Subcellular location=cytoplasm (GO:0005737) [several speckles]
Chr07	irgsp1_rep	five_prime_UTR	19888137	19888283	.	-	.	Parent=Os07t0516300-01
Chr07	irgsp1_rep	CDS	19887546	19888136	.	-	0	Parent=Os07t0516300-01
Chr07	irgsp1_rep	three_prime_UTR	19887349	19887545	.	-	.	Parent=Os07t0516300-01
Chr07	irgsp1_rep	mRNA	19899209	19899595	.	+	.	ID=Os07t0516400-00;Name=Os07t0516400-00;Locus_id=Os07g0516400;Note=Hypothetical conserved gene.;Transcript_evidence=DQ244334 (DDBJ);ORF_evidence=NP_001059783.2 (RefSeq);TENOR=Os07t0516400-00;KEGG=Os07t0516400-00
Chr07	irgsp1_rep	five_prime_UTR	19899209	19899209	.	+	.	Parent=Os07t0516400-00
Chr07	irgsp1_rep	CDS	19899210	19899551	.	+	0	Parent=Os07t0516400-00
Chr07	irgsp1_rep	three_prime_UTR	19899552	19899595	.	+	.	Parent=Os07t0516400-00
Chr07	irgsp1_rep	mRNA	19906325	19909624	.	-	.	ID=Os07t0516500-01;Name=Os07t0516500-01;Locus_id=Os07g0516500;Note=Conserved hypothetical protein.;Transcript_evidence=AK100232 (DDBJ%2C Best hit);ORF_evidence=B9F1Y0 (UniProt);NIAS_FLcDNA=J023050A19;Expression=AK100232;TENOR=Os07t0516500-01;KEGG=Os07t0516500-01
Chr07	irgsp1_rep	five_prime_UTR	19909229	19909624	.	-	.	Parent=Os07t0516500-01
Chr07	irgsp1_rep	five_prime_UTR	19908172	19908192	.	-	.	Parent=Os07t0516500-01
Chr07	irgsp1_rep	CDS	19907581	19908171	.	-	0	Parent=Os07t0516500-01
Chr07	irgsp1_rep	CDS	19907477	19907512	.	-	0	Parent=Os07t0516500-01
Chr07	irgsp1_rep	CDS	19907112	19907369	.	-	0	Parent=Os07t0516500-01
Chr07	irgsp1_rep	three_prime_UTR	19907107	19907111	.	-	.	Parent=Os07t0516500-01
Chr07	irgsp1_rep	three_prime_UTR	19906325	19906582	.	-	.	Parent=Os07t0516500-01
Chr07	irgsp1_rep	mRNA	19905031	19909624	.	-	.	ID=Os07t0516500-02;Name=Os07t0516500-02;Locus_id=Os07g0516500;Note=Conserved hypothetical protein.;Transcript_evidence=AK119429 (DDBJ%2C Best hit);ORF_evidence=B9F1Y0 (UniProt);NIAS_FLcDNA=001-133-A01;Expression=AK119429;TENOR=Os07t0516500-02;KEGG=Os07t0516500-02
Chr07	irgsp1_rep	five_prime_UTR	19908172	19909624	.	-	.	Parent=Os07t0516500-02
Chr07	irgsp1_rep	CDS	19907581	19908171	.	-	0	Parent=Os07t0516500-02
Chr07	irgsp1_rep	CDS	19907477	19907512	.	-	0	Parent=Os07t0516500-02
Chr07	irgsp1_rep	CDS	19907112	19907369	.	-	0	Parent=Os07t0516500-02
Chr07	irgsp1_rep	three_prime_UTR	19907107	19907111	.	-	.	Parent=Os07t0516500-02
Chr07	irgsp1_rep	three_prime_UTR	19905754	19906582	.	-	.	Parent=Os07t0516500-02
Chr07	irgsp1_rep	three_prime_UTR	19905031	19905561	.	-	.	Parent=Os07t0516500-02
Chr07	irgsp1_rep	mRNA	19906395	19909624	.	-	.	ID=Os07t0516500-03;Name=Os07t0516500-03;Locus_id=Os07g0516500;Note=Hypothetical conserved gene.;Transcript_evidence=AK288084 (DDBJ%2C Best hit);ORF_evidence=NP_001059784.1 (RefSeq);NIAS_FLcDNA=J075174I12;TENOR=Os07t0516500-03;KEGG=Os07t0516500-03
Chr07	irgsp1_rep	five_prime_UTR	19908172	19909624	.	-	.	Parent=Os07t0516500-03
Chr07	irgsp1_rep	CDS	19907575	19908171	.	-	0	Parent=Os07t0516500-03
Chr07	irgsp1_rep	three_prime_UTR	19907477	19907574	.	-	.	Parent=Os07t0516500-03
Chr07	irgsp1_rep	three_prime_UTR	19907107	19907369	.	-	.	Parent=Os07t0516500-03
Chr07	irgsp1_rep	three_prime_UTR	19906395	19906582	.	-	.	Parent=Os07t0516500-03
Chr07	irgsp1_rep	mRNA	19906323	19907780	.	-	.	ID=Os07t0516500-04;Name=Os07t0516500-04;Locus_id=Os07g0516500;Note=Hypothetical conserved gene.;Transcript_evidence=AK061672 (DDBJ%2C Best hit);ORF_evidence=B9F1Y0 (UniProt);NIAS_FLcDNA=001-036-G08;Expression=AK061672;TENOR=Os07t0516500-04;KEGG=Os07t0516500-04
Chr07	irgsp1_rep	five_prime_UTR	19907779	19907780	.	-	.	Parent=Os07t0516500-04
Chr07	irgsp1_rep	CDS	19907581	19907778	.	-	0	Parent=Os07t0516500-04
Chr07	irgsp1_rep	CDS	19907477	19907512	.	-	0	Parent=Os07t0516500-04
Chr07	irgsp1_rep	CDS	19907112	19907369	.	-	0	Parent=Os07t0516500-04
Chr07	irgsp1_rep	three_prime_UTR	19907107	19907111	.	-	.	Parent=Os07t0516500-04
Chr07	irgsp1_rep	three_prime_UTR	19906323	19906582	.	-	.	Parent=Os07t0516500-04
Chr07	irgsp1_rep	mRNA	19911366	19914456	.	+	.	ID=Os07t0516600-01;Name=Os07t0516600-01;Locus_id=Os07g0516600;Note=Multi antimicrobial extrusion protein MatE family protein.;Transcript_evidence=AK120864 (DDBJ%2C Best hit);ORF_evidence=NP_001147791.1 (RefSeq);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);NIAS_FLcDNA=J023025C14;Expression=AK120864;TENOR=Os07t0516600-01;KEGG=Os07t0516600-01
Chr07	irgsp1_rep	five_prime_UTR	19911366	19911495	.	+	.	Parent=Os07t0516600-01
Chr07	irgsp1_rep	CDS	19911496	19911771	.	+	0	Parent=Os07t0516600-01
Chr07	irgsp1_rep	CDS	19911874	19912505	.	+	0	Parent=Os07t0516600-01
Chr07	irgsp1_rep	CDS	19912580	19912636	.	+	1	Parent=Os07t0516600-01
Chr07	irgsp1_rep	CDS	19912738	19912976	.	+	1	Parent=Os07t0516600-01
Chr07	irgsp1_rep	CDS	19913482	19913600	.	+	2	Parent=Os07t0516600-01
Chr07	irgsp1_rep	CDS	19913719	19913805	.	+	0	Parent=Os07t0516600-01
Chr07	irgsp1_rep	CDS	19914140	19914211	.	+	0	Parent=Os07t0516600-01
Chr07	irgsp1_rep	three_prime_UTR	19914212	19914456	.	+	.	Parent=Os07t0516600-01
Chr07	irgsp1_rep	mRNA	19911518	19913807	.	-	.	ID=Os07t0516650-00;Name=Os07t0516650-00;Locus_id=Os07g0516650;Note=Hypothetical protein.;Transcript_evidence=tplb0045m16 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0516650-00
Chr07	irgsp1_rep	five_prime_UTR	19913684	19913807	.	-	.	Parent=Os07t0516650-00
Chr07	irgsp1_rep	five_prime_UTR	19913436	19913567	.	-	.	Parent=Os07t0516650-00
Chr07	irgsp1_rep	five_prime_UTR	19912797	19912927	.	-	.	Parent=Os07t0516650-00
Chr07	irgsp1_rep	CDS	19912662	19912796	.	-	0	Parent=Os07t0516650-00
Chr07	irgsp1_rep	CDS	19911853	19912494	.	-	0	Parent=Os07t0516650-00
Chr07	irgsp1_rep	CDS	19911696	19911752	.	-	0	Parent=Os07t0516650-00
Chr07	irgsp1_rep	three_prime_UTR	19911518	19911695	.	-	.	Parent=Os07t0516650-00
Chr07	irgsp1_rep	mRNA	19916969	19917631	.	+	.	ID=Os07t0516700-01;Name=Os07t0516700-01;Locus_id=Os07g0516700;Note=Conserved hypothetical protein.;Transcript_evidence=AK243106 (DDBJ%2C Best hit);ORF_evidence=NP_001175223.1 (RefSeq);NIAS_FLcDNA=J100026D14;TENOR=Os07t0516700-01;KEGG=Os07t0516700-01
Chr07	irgsp1_rep	five_prime_UTR	19916969	19917054	.	+	.	Parent=Os07t0516700-01
Chr07	irgsp1_rep	CDS	19917055	19917384	.	+	0	Parent=Os07t0516700-01
Chr07	irgsp1_rep	three_prime_UTR	19917385	19917631	.	+	.	Parent=Os07t0516700-01
Chr07	irgsp1_rep	mRNA	19920289	19921569	.	-	.	ID=Os07t0516801-00;Name=Os07t0516801-00;Locus_id=Os07g0516801;Note=Hypothetical gene.;Transcript_evidence=BT009008 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0516801-00
Chr07	irgsp1_rep	five_prime_UTR	19921504	19921569	.	-	.	Parent=Os07t0516801-00
Chr07	irgsp1_rep	five_prime_UTR	19920642	19920805	.	-	.	Parent=Os07t0516801-00
Chr07	irgsp1_rep	CDS	19920289	19920641	.	-	0	Parent=Os07t0516801-00
Chr07	irgsp1_rep	mRNA	19920232	19922644	.	+	.	ID=Os07t0516900-01;Name=Os07t0516900-01;Locus_id=Os07g0516900;Note=Similar to RNA Binding Protein 45.;Transcript_evidence=AK062798 (DDBJ%2C Best hit);ORF_evidence=Q7EZ58 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-107-C10;Expression=AK062798;TENOR=Os07t0516900-01;KEGG=Os07t0516900-01
Chr07	irgsp1_rep	five_prime_UTR	19920232	19920335	.	+	.	Parent=Os07t0516900-01
Chr07	irgsp1_rep	CDS	19920336	19920341	.	+	0	Parent=Os07t0516900-01
Chr07	irgsp1_rep	CDS	19920552	19920797	.	+	0	Parent=Os07t0516900-01
Chr07	irgsp1_rep	CDS	19921499	19921982	.	+	0	Parent=Os07t0516900-01
Chr07	irgsp1_rep	CDS	19922328	19922347	.	+	2	Parent=Os07t0516900-01
Chr07	irgsp1_rep	three_prime_UTR	19922348	19922644	.	+	.	Parent=Os07t0516900-01
Chr07	irgsp1_rep	mRNA	19921722	19924714	.	+	.	ID=Os07t0516900-02;Name=Os07t0516900-02;Locus_id=Os07g0516900;Note=Similar to RNA Binding Protein 45.;Transcript_evidence=AK061900 (DDBJ%2C Best hit);ORF_evidence=Q10HZ7 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-041-H03;Expression=AK061900;TENOR=Os07t0516900-02;KEGG=Os07t0516900-02
Chr07	irgsp1_rep	five_prime_UTR	19921722	19921723	.	+	.	Parent=Os07t0516900-02
Chr07	irgsp1_rep	CDS	19921724	19921982	.	+	0	Parent=Os07t0516900-02
Chr07	irgsp1_rep	CDS	19922328	19922347	.	+	2	Parent=Os07t0516900-02
Chr07	irgsp1_rep	three_prime_UTR	19922348	19922401	.	+	.	Parent=Os07t0516900-02
Chr07	irgsp1_rep	three_prime_UTR	19923411	19923463	.	+	.	Parent=Os07t0516900-02
Chr07	irgsp1_rep	three_prime_UTR	19923533	19923663	.	+	.	Parent=Os07t0516900-02
Chr07	irgsp1_rep	three_prime_UTR	19923759	19923855	.	+	.	Parent=Os07t0516900-02
Chr07	irgsp1_rep	three_prime_UTR	19923941	19924141	.	+	.	Parent=Os07t0516900-02
Chr07	irgsp1_rep	three_prime_UTR	19924380	19924714	.	+	.	Parent=Os07t0516900-02
Chr07	irgsp1_rep	mRNA	19922423	19924599	.	+	.	ID=Os07t0516900-03;Name=Os07t0516900-03;Locus_id=Os07g0516900;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK065559 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013031C16;Expression=AK065559;TENOR=Os07t0516900-03;KEGG=Os07t0516900-03
Chr07	irgsp1_rep	five_prime_UTR	19922423	19923367	.	+	.	Parent=Os07t0516900-03
Chr07	irgsp1_rep	CDS	19923368	19923463	.	+	0	Parent=Os07t0516900-03
Chr07	irgsp1_rep	CDS	19923533	19923663	.	+	0	Parent=Os07t0516900-03
Chr07	irgsp1_rep	CDS	19923759	19923855	.	+	1	Parent=Os07t0516900-03
Chr07	irgsp1_rep	CDS	19923941	19924141	.	+	0	Parent=Os07t0516900-03
Chr07	irgsp1_rep	CDS	19924380	19924382	.	+	0	Parent=Os07t0516900-03
Chr07	irgsp1_rep	three_prime_UTR	19924383	19924599	.	+	.	Parent=Os07t0516900-03
Chr07	irgsp1_rep	mRNA	19926106	19928534	.	-	.	ID=Os07t0517000-01;Name=Os07t0517000-01;Locus_id=Os07g0517000;Oryzabase Gene Symbol Synonym(s)=OsRH32;Oryzabase Gene Name Synonym(s)=RNA helicase 32;Note=DNA/RNA helicase%2C C-terminal domain containing protein.;Transcript_evidence=AK064167 (DDBJ%2C Best hit);ORF_evidence=B9FXI6 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524);InterPro=Helicase%2C C-terminal (IPR001650);NIAS_FLcDNA=002-103-H11;Oryzabase=19142;Expression=AK064167;TENOR=Os07t0517000-01;KEGG=Os07t0517000-01
Chr07	irgsp1_rep	five_prime_UTR	19928533	19928534	.	-	.	Parent=Os07t0517000-01
Chr07	irgsp1_rep	CDS	19928266	19928532	.	-	0	Parent=Os07t0517000-01
Chr07	irgsp1_rep	CDS	19928008	19928196	.	-	0	Parent=Os07t0517000-01
Chr07	irgsp1_rep	CDS	19927775	19927936	.	-	0	Parent=Os07t0517000-01
Chr07	irgsp1_rep	CDS	19927056	19927534	.	-	0	Parent=Os07t0517000-01
Chr07	irgsp1_rep	CDS	19926772	19926929	.	-	1	Parent=Os07t0517000-01
Chr07	irgsp1_rep	CDS	19926359	19926678	.	-	2	Parent=Os07t0517000-01
Chr07	irgsp1_rep	three_prime_UTR	19926106	19926358	.	-	.	Parent=Os07t0517000-01
Chr07	irgsp1_rep	mRNA	19935503	19936387	.	+	.	ID=Os07t0517100-01;Name=Os07t0517100-01;Locus_id=Os07g0517100;Note=Heat shock protein Hsp20 domain containing protein.;Transcript_evidence=AK071773 (DDBJ%2C Best hit);ORF_evidence=Q7EZ57 (UniProt);InterPro=Heat shock protein Hsp20 (IPR002068),HSP20-like chaperone (IPR008978);NIAS_FLcDNA=J023111H14;Expression=AK071773;TENOR=Os07t0517100-01;KEGG=Os07t0517100-01
Chr07	irgsp1_rep	five_prime_UTR	19935503	19935576	.	+	.	Parent=Os07t0517100-01
Chr07	irgsp1_rep	CDS	19935577	19935796	.	+	0	Parent=Os07t0517100-01
Chr07	irgsp1_rep	CDS	19935882	19936183	.	+	2	Parent=Os07t0517100-01
Chr07	irgsp1_rep	three_prime_UTR	19936184	19936387	.	+	.	Parent=Os07t0517100-01
Chr07	irgsp1_rep	mRNA	19935550	19936420	.	+	.	ID=Os07t0517100-02;Name=Os07t0517100-02;Locus_id=Os07g0517100;Note=Heat shock protein Hsp20 domain containing protein.;Transcript_evidence=AK099296 (DDBJ%2C Best hit);ORF_evidence=Q7EZ57 (UniProt);InterPro=Heat shock protein Hsp20 (IPR002068),HSP20-like chaperone (IPR008978);NIAS_FLcDNA=J023138P10;Expression=AK099296;TENOR=Os07t0517100-02;KEGG=Os07t0517100-02
Chr07	irgsp1_rep	five_prime_UTR	19935550	19935576	.	+	.	Parent=Os07t0517100-02
Chr07	irgsp1_rep	CDS	19935577	19935796	.	+	0	Parent=Os07t0517100-02
Chr07	irgsp1_rep	CDS	19935882	19936183	.	+	2	Parent=Os07t0517100-02
Chr07	irgsp1_rep	three_prime_UTR	19936184	19936420	.	+	.	Parent=Os07t0517100-02
Chr07	irgsp1_rep	mRNA	19935552	19936423	.	+	.	ID=Os07t0517100-03;Name=Os07t0517100-03;Locus_id=Os07g0517100;Note=Similar to 18.8 kDa class V heat shock protein.;Transcript_evidence=AK063798 (DDBJ%2C Best hit);ORF_evidence=Q7EZ57 (UniProt);NIAS_FLcDNA=001-121-F05;TENOR=Os07t0517100-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	19935552	19935576	.	+	.	Parent=Os07t0517100-03
Chr07	irgsp1_rep	CDS	19935577	19935855	.	+	0	Parent=Os07t0517100-03
Chr07	irgsp1_rep	three_prime_UTR	19935856	19936423	.	+	.	Parent=Os07t0517100-03
Chr07	irgsp1_rep	mRNA	19938751	19943127	.	+	.	ID=Os07t0517300-01;Name=Os07t0517300-01;Locus_id=Os07g0517300;Note=Protein of unknown function DUF1032 family protein.;Transcript_evidence=AK121812 (DDBJ%2C Best hit);ORF_evidence=B9FXI8 (UniProt);InterPro=Non-SMC condensin II complex%2C subunit H2-like (IPR009378);NIAS_FLcDNA=J033098C24;Expression=AK121812;TENOR=Os07t0517300-01;KEGG=Os07t0517300-01
Chr07	irgsp1_rep	CDS	19938751	19938823	.	+	0	Parent=Os07t0517300-01
Chr07	irgsp1_rep	CDS	19939133	19939232	.	+	2	Parent=Os07t0517300-01
Chr07	irgsp1_rep	CDS	19940259	19940359	.	+	1	Parent=Os07t0517300-01
Chr07	irgsp1_rep	CDS	19940438	19940574	.	+	2	Parent=Os07t0517300-01
Chr07	irgsp1_rep	CDS	19940661	19941147	.	+	0	Parent=Os07t0517300-01
Chr07	irgsp1_rep	CDS	19941261	19941415	.	+	2	Parent=Os07t0517300-01
Chr07	irgsp1_rep	CDS	19941509	19941679	.	+	0	Parent=Os07t0517300-01
Chr07	irgsp1_rep	CDS	19941760	19941849	.	+	0	Parent=Os07t0517300-01
Chr07	irgsp1_rep	CDS	19942108	19942206	.	+	0	Parent=Os07t0517300-01
Chr07	irgsp1_rep	CDS	19942290	19942451	.	+	0	Parent=Os07t0517300-01
Chr07	irgsp1_rep	CDS	19942519	19942845	.	+	0	Parent=Os07t0517300-01
Chr07	irgsp1_rep	three_prime_UTR	19942846	19943127	.	+	.	Parent=Os07t0517300-01
Chr07	irgsp1_rep	mRNA	19944044	19946473	.	-	.	ID=Os07t0517400-00;Name=Os07t0517400-00;Locus_id=Os07g0517400;Note=IQ motif%2C EF-hand binding site domain containing protein.;Transcript_evidence=EU946059 (DDBJ);ORF_evidence=Q84Z28 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);TENOR=Os07t0517400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	19945987	19946473	.	-	0	Parent=Os07t0517400-00
Chr07	irgsp1_rep	CDS	19945646	19945890	.	-	2	Parent=Os07t0517400-00
Chr07	irgsp1_rep	CDS	19945402	19945556	.	-	0	Parent=Os07t0517400-00
Chr07	irgsp1_rep	CDS	19945322	19945328	.	-	1	Parent=Os07t0517400-00
Chr07	irgsp1_rep	three_prime_UTR	19945089	19945321	.	-	.	Parent=Os07t0517400-00
Chr07	irgsp1_rep	three_prime_UTR	19944683	19944958	.	-	.	Parent=Os07t0517400-00
Chr07	irgsp1_rep	three_prime_UTR	19944247	19944402	.	-	.	Parent=Os07t0517400-00
Chr07	irgsp1_rep	three_prime_UTR	19944044	19944123	.	-	.	Parent=Os07t0517400-00
Chr07	irgsp1_rep	mRNA	19949019	19950654	.	+	.	ID=Os07t0517433-00;Name=Os07t0517433-00;Locus_id=Os07g0517433;Note=Hypothetical gene.;Transcript_evidence=BT085224 (DDBJ);ORF_evidence=GeneMark;TENOR=Os07t0517433-00;KEGG=Os07t0517433-00
Chr07	irgsp1_rep	five_prime_UTR	19949019	19949105	.	+	.	Parent=Os07t0517433-00
Chr07	irgsp1_rep	five_prime_UTR	19949258	19949347	.	+	.	Parent=Os07t0517433-00
Chr07	irgsp1_rep	five_prime_UTR	19949438	19949898	.	+	.	Parent=Os07t0517433-00
Chr07	irgsp1_rep	five_prime_UTR	19950401	19950429	.	+	.	Parent=Os07t0517433-00
Chr07	irgsp1_rep	CDS	19950430	19950654	.	+	0	Parent=Os07t0517433-00
Chr07	irgsp1_rep	mRNA	19957804	19958172	.	-	.	ID=Os07t0517467-00;Name=Os07t0517467-00;Locus_id=Os07g0517467;Note=Hypothetical protein.;Transcript_evidence=FP101809 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0517467-00
Chr07	irgsp1_rep	five_prime_UTR	19958172	19958172	.	-	.	Parent=Os07t0517467-00
Chr07	irgsp1_rep	CDS	19957804	19958171	.	-	0	Parent=Os07t0517467-00
Chr07	irgsp1_rep	mRNA	19962120	19963731	.	+	.	ID=Os07t0517600-00;Name=Os07t0517600-00;Locus_id=Os07g0517600;CGSNL Gene Name=AAA-ATPASE 6;Oryzabase Gene Name Synonym(s)=OsAAA-ATPase6%2C AAA-ATPase6;Note=Similar to mitochondrial protein.;Transcript_evidence=AK365918 (DDBJ);ORF_evidence=NP_001147824.1 (RefSeq);GO=Molecular Function: ATP binding (GO:0005524);InterPro=ATPase%2C AAA-type%2C core (IPR003959);Oryzabase=23513;TENOR=Os07t0517600-00;KEGG=Os07t0517600-00
Chr07	irgsp1_rep	CDS	19962120	19963184	.	+	0	Parent=Os07t0517600-00
Chr07	irgsp1_rep	CDS	19963284	19963658	.	+	0	Parent=Os07t0517600-00
Chr07	irgsp1_rep	three_prime_UTR	19963659	19963731	.	+	.	Parent=Os07t0517600-00
Chr07	irgsp1_rep	mRNA	19965669	19967017	.	+	.	ID=Os07t0517700-00;Name=Os07t0517700-00;Locus_id=Os07g0517700;Note=F-box domain%2C Skp2-like domain containing protein.;Transcript_evidence=AK368506 (DDBJ);ORF_evidence=Q84Z24 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);TENOR=Os07t0517700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	19965669	19967009	.	+	0	Parent=Os07t0517700-00
Chr07	irgsp1_rep	three_prime_UTR	19967010	19967017	.	+	.	Parent=Os07t0517700-00
Chr07	irgsp1_rep	mRNA	19971404	19972069	.	+	.	ID=Os07t0517800-00;Name=Os07t0517800-00;Locus_id=Os07g0517800;CGSNL Gene Name=AAA-ATPASE 3;Oryzabase Gene Name Synonym(s)=OsAAA-ATPase3%2C OsAAA-ATPase 3%2C AAA-ATPase3;Note=Similar to mitochondrial protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001148068.1 (RefSeq);GO=Molecular Function: ATP binding (GO:0005524);InterPro=ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);Oryzabase=23148;TENOR=Os07t0517800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	19971404	19971589	.	+	0	Parent=Os07t0517800-00
Chr07	irgsp1_rep	CDS	19971671	19972069	.	+	0	Parent=Os07t0517800-00
Chr07	irgsp1_rep	mRNA	19975985	19981363	.	-	.	ID=Os07t0517900-01;Name=Os07t0517900-01;Locus_id=Os07g0517900;Note=Similar to taxane 10-beta-hydroxylase.;Transcript_evidence=AK102289 (DDBJ%2C Best hit);ORF_evidence=NP_001148316.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);NIAS_FLcDNA=J033089K05;TENOR=Os07t0517900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	19981215	19981363	.	-	.	Parent=Os07t0517900-01
Chr07	irgsp1_rep	five_prime_UTR	19980612	19980637	.	-	.	Parent=Os07t0517900-01
Chr07	irgsp1_rep	CDS	19980581	19980611	.	-	0	Parent=Os07t0517900-01
Chr07	irgsp1_rep	CDS	19978936	19979327	.	-	2	Parent=Os07t0517900-01
Chr07	irgsp1_rep	CDS	19978370	19978808	.	-	0	Parent=Os07t0517900-01
Chr07	irgsp1_rep	CDS	19978096	19978283	.	-	2	Parent=Os07t0517900-01
Chr07	irgsp1_rep	CDS	19976200	19976274	.	-	0	Parent=Os07t0517900-01
Chr07	irgsp1_rep	three_prime_UTR	19975985	19976199	.	-	.	Parent=Os07t0517900-01
Chr07	irgsp1_rep	mRNA	19985763	19987668	.	+	.	ID=Os07t0518100-01;Name=Os07t0518100-01;Locus_id=Os07g0518100;Note=CytoChrome P450 family protein.;Transcript_evidence=AK105659 (DDBJ%2C Best hit);ORF_evidence=NP_001148166.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=001-200-G10;Expression=AK105659;TENOR=Os07t0518100-01;KEGG=Os07t0518100-01
Chr07	irgsp1_rep	five_prime_UTR	19985763	19985798	.	+	.	Parent=Os07t0518100-01
Chr07	irgsp1_rep	CDS	19985799	19986760	.	+	0	Parent=Os07t0518100-01
Chr07	irgsp1_rep	CDS	19986845	19987361	.	+	1	Parent=Os07t0518100-01
Chr07	irgsp1_rep	three_prime_UTR	19987362	19987668	.	+	.	Parent=Os07t0518100-01
Chr07	irgsp1_rep	mRNA	19988116	19989519	.	-	.	ID=Os07t0518200-01;Name=Os07t0518200-01;Locus_id=Os07g0518200;Note=Conserved hypothetical protein.;Transcript_evidence=AK108574 (DDBJ%2C Best hit);ORF_evidence=A2YLV8 (UniProt);NIAS_FLcDNA=002-145-F09;TENOR=Os07t0518200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	19989519	19989519	.	-	.	Parent=Os07t0518200-01
Chr07	irgsp1_rep	CDS	19988904	19989518	.	-	0	Parent=Os07t0518200-01
Chr07	irgsp1_rep	three_prime_UTR	19988116	19988903	.	-	.	Parent=Os07t0518200-01
Chr07	irgsp1_rep	mRNA	20012739	20015538	.	+	.	ID=Os07t0518500-01;Name=Os07t0518500-01;Locus_id=Os07g0518500;Note=Similar to taxane 10-beta-hydroxylase.;Transcript_evidence=AK065400 (DDBJ%2C Best hit);ORF_evidence=NP_001148316.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);NIAS_FLcDNA=J013020I02;Expression=AK065400;TENOR=Os07t0518500-01;KEGG=Os07t0518500-01
Chr07	irgsp1_rep	five_prime_UTR	20012739	20012784	.	+	.	Parent=Os07t0518500-01
Chr07	irgsp1_rep	CDS	20012785	20013285	.	+	0	Parent=Os07t0518500-01
Chr07	irgsp1_rep	three_prime_UTR	20013286	20014236	.	+	.	Parent=Os07t0518500-01
Chr07	irgsp1_rep	three_prime_UTR	20014332	20014519	.	+	.	Parent=Os07t0518500-01
Chr07	irgsp1_rep	three_prime_UTR	20014896	20015538	.	+	.	Parent=Os07t0518500-01
Chr07	irgsp1_rep	mRNA	20012766	20015490	.	+	.	ID=Os07t0518500-02;Name=Os07t0518500-02;Locus_id=Os07g0518500;Note=CytoChrome P450 family protein.;Transcript_evidence=AK099924 (DDBJ%2C Best hit);ORF_evidence=B7EAV7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J013116M09;Expression=AK099924;TENOR=Os07t0518500-02;KEGG=Os07t0518500-02
Chr07	irgsp1_rep	five_prime_UTR	20012766	20012784	.	+	.	Parent=Os07t0518500-02
Chr07	irgsp1_rep	CDS	20012785	20013279	.	+	0	Parent=Os07t0518500-02
Chr07	irgsp1_rep	CDS	20013789	20014236	.	+	0	Parent=Os07t0518500-02
Chr07	irgsp1_rep	CDS	20014332	20014519	.	+	2	Parent=Os07t0518500-02
Chr07	irgsp1_rep	CDS	20014896	20015216	.	+	0	Parent=Os07t0518500-02
Chr07	irgsp1_rep	three_prime_UTR	20015217	20015490	.	+	.	Parent=Os07t0518500-02
Chr07	irgsp1_rep	mRNA	20012766	20015432	.	+	.	ID=Os07t0518500-03;Name=Os07t0518500-03;Locus_id=Os07g0518500;Note=Similar to taxane 10-beta-hydroxylase.;Transcript_evidence=AK071984 (DDBJ%2C Best hit);ORF_evidence=NP_001148316.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);NIAS_FLcDNA=J013091E24;Expression=AK071984;TENOR=Os07t0518500-03;KEGG=Os07t0518500-03
Chr07	irgsp1_rep	five_prime_UTR	20012766	20012784	.	+	.	Parent=Os07t0518500-03
Chr07	irgsp1_rep	CDS	20012785	20013279	.	+	0	Parent=Os07t0518500-03
Chr07	irgsp1_rep	CDS	20013789	20014236	.	+	0	Parent=Os07t0518500-03
Chr07	irgsp1_rep	CDS	20014332	20014579	.	+	2	Parent=Os07t0518500-03
Chr07	irgsp1_rep	three_prime_UTR	20014580	20015432	.	+	.	Parent=Os07t0518500-03
Chr07	irgsp1_rep	mRNA	20013103	20015490	.	+	.	ID=Os07t0518500-04;Name=Os07t0518500-04;Locus_id=Os07g0518500;Note=Similar to cDNA clone:J013020I02%2C full insert sequence.;Transcript_evidence=AK061878 (DDBJ%2C Best hit);ORF_evidence=B7EAV7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=001-041-B03;Expression=AK061878;TENOR=Os07t0518500-04;KEGG=Os07t0518500-04
Chr07	irgsp1_rep	CDS	20013103	20013279	.	+	0	Parent=Os07t0518500-04
Chr07	irgsp1_rep	CDS	20013789	20014236	.	+	0	Parent=Os07t0518500-04
Chr07	irgsp1_rep	CDS	20014332	20014519	.	+	2	Parent=Os07t0518500-04
Chr07	irgsp1_rep	CDS	20014896	20015216	.	+	0	Parent=Os07t0518500-04
Chr07	irgsp1_rep	three_prime_UTR	20015217	20015490	.	+	.	Parent=Os07t0518500-04
Chr07	irgsp1_rep	mRNA	20045846	20049071	.	+	.	ID=Os07t0519100-01;Name=Os07t0519100-01;Locus_id=Os07g0519100;Note=Similar to taxane 10-beta-hydroxylase.;Transcript_evidence=AK241646 (DDBJ%2C Best hit);ORF_evidence=NP_001148316.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J065190D03;TENOR=Os07t0519100-01;KEGG=Os07t0519100-01
Chr07	irgsp1_rep	five_prime_UTR	20045846	20045882	.	+	.	Parent=Os07t0519100-01
Chr07	irgsp1_rep	CDS	20045883	20046377	.	+	0	Parent=Os07t0519100-01
Chr07	irgsp1_rep	CDS	20046505	20046943	.	+	0	Parent=Os07t0519100-01
Chr07	irgsp1_rep	CDS	20047036	20047223	.	+	2	Parent=Os07t0519100-01
Chr07	irgsp1_rep	CDS	20047385	20047702	.	+	0	Parent=Os07t0519100-01
Chr07	irgsp1_rep	three_prime_UTR	20047703	20049071	.	+	.	Parent=Os07t0519100-01
Chr07	irgsp1_rep	mRNA	20050247	20054019	.	+	.	ID=Os07t0519300-01;Name=Os07t0519300-01;Locus_id=Os07g0519300;Note=Similar to taxane 10-beta-hydroxylase.;Transcript_evidence=AK073618 (DDBJ%2C Best hit);ORF_evidence=NP_001148316.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);NIAS_FLcDNA=J033050F23;TENOR=Os07t0519300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	20050247	20050423	.	+	.	Parent=Os07t0519300-01
Chr07	irgsp1_rep	five_prime_UTR	20051041	20051121	.	+	.	Parent=Os07t0519300-01
Chr07	irgsp1_rep	CDS	20051122	20051134	.	+	0	Parent=Os07t0519300-01
Chr07	irgsp1_rep	CDS	20052158	20052549	.	+	2	Parent=Os07t0519300-01
Chr07	irgsp1_rep	CDS	20052658	20053096	.	+	0	Parent=Os07t0519300-01
Chr07	irgsp1_rep	CDS	20053196	20053383	.	+	2	Parent=Os07t0519300-01
Chr07	irgsp1_rep	CDS	20053523	20053843	.	+	0	Parent=Os07t0519300-01
Chr07	irgsp1_rep	three_prime_UTR	20053844	20054019	.	+	.	Parent=Os07t0519300-01
Chr07	irgsp1_rep	mRNA	20055601	20060099	.	-	.	ID=Os07t0519450-00;Name=Os07t0519450-00;Locus_id=Os07g0519450;Note=Similar to MYB transcription factor.;Transcript_evidence=BT042322 (DDBJ);ORF_evidence=B4FMQ3 (UniProt);TENOR=Os07t0519450-00
Chr07	irgsp1_rep	five_prime_UTR	20060036	20060099	.	-	.	Parent=Os07t0519450-00
Chr07	irgsp1_rep	CDS	20059825	20060035	.	-	0	Parent=Os07t0519450-00
Chr07	irgsp1_rep	CDS	20055601	20056148	.	-	2	Parent=Os07t0519450-00
Chr07	irgsp1_rep	mRNA	20063428	20065199	.	+	.	ID=Os07t0519600-00;Name=Os07t0519600-00;Locus_id=Os07g0519600;Note=Similar to taxane 10-beta-hydroxylase.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001148316.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os07t0519600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	20063428	20063910	.	+	0	Parent=Os07t0519600-00
Chr07	irgsp1_rep	CDS	20064016	20064454	.	+	0	Parent=Os07t0519600-00
Chr07	irgsp1_rep	CDS	20064553	20064740	.	+	2	Parent=Os07t0519600-00
Chr07	irgsp1_rep	CDS	20064894	20065199	.	+	0	Parent=Os07t0519600-00
Chr07	irgsp1_rep	mRNA	20067553	20067870	.	+	.	ID=Os07t0519725-00;Name=Os07t0519725-00;Locus_id=Os07g0519725;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FXJ5 (UniProt);TENOR=Os07t0519725-00
Chr07	irgsp1_rep	CDS	20067553	20067870	.	+	0	Parent=Os07t0519725-00
Chr07	irgsp1_rep	mRNA	20068421	20068896	.	+	.	ID=Os07t0519800-00;Name=Os07t0519800-00;Locus_id=Os07g0519800;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8H517 (UniProt);TENOR=Os07t0519800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	20068421	20068769	.	+	0	Parent=Os07t0519800-00
Chr07	irgsp1_rep	CDS	20068784	20068896	.	+	2	Parent=Os07t0519800-00
Chr07	irgsp1_rep	mRNA	20077825	20081243	.	+	.	ID=Os07t0520100-00;Name=Os07t0520100-00;Locus_id=Os07g0520100;Note=Similar to taxane 10-beta-hydroxylase.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001148316.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os07t0520100-00;KEGG=Os07t0520100-00
Chr07	irgsp1_rep	CDS	20077825	20078018	.	+	0	Parent=Os07t0520100-00
Chr07	irgsp1_rep	CDS	20079648	20080071	.	+	1	Parent=Os07t0520100-00
Chr07	irgsp1_rep	CDS	20080177	20080615	.	+	0	Parent=Os07t0520100-00
Chr07	irgsp1_rep	CDS	20080714	20080901	.	+	2	Parent=Os07t0520100-00
Chr07	irgsp1_rep	CDS	20081055	20081243	.	+	0	Parent=Os07t0520100-00
Chr07	irgsp1_rep	mRNA	20084700	20086509	.	-	.	ID=Os07t0520200-01;Name=Os07t0520200-01;Locus_id=Os07g0520200;Note=Hypothetical protein.;Transcript_evidence=AK106236 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-100-C04;Expression=AK106236;TENOR=Os07t0520200-01;KEGG=Os07t0520200-01
Chr07	irgsp1_rep	five_prime_UTR	20085945	20086509	.	-	.	Parent=Os07t0520200-01
Chr07	irgsp1_rep	CDS	20084949	20085944	.	-	0	Parent=Os07t0520200-01
Chr07	irgsp1_rep	three_prime_UTR	20084700	20084948	.	-	.	Parent=Os07t0520200-01
Chr07	irgsp1_rep	mRNA	20084939	20086610	.	+	.	ID=Os07t0520300-01;Name=Os07t0520300-01;Locus_id=Os07g0520300;Note=CytoChrome P450 family protein.;Transcript_evidence=AK109627 (DDBJ%2C Best hit);ORF_evidence=NP_001148166.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: monooxygenase activity (GO:0004497),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group IV (IPR002403),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=002-138-B12;Expression=AK109627;TENOR=Os07t0520300-01;KEGG=Os07t0520300-01
Chr07	irgsp1_rep	five_prime_UTR	20084939	20084963	.	+	.	Parent=Os07t0520300-01
Chr07	irgsp1_rep	CDS	20084964	20085925	.	+	0	Parent=Os07t0520300-01
Chr07	irgsp1_rep	CDS	20085998	20086532	.	+	1	Parent=Os07t0520300-01
Chr07	irgsp1_rep	three_prime_UTR	20086533	20086610	.	+	.	Parent=Os07t0520300-01
Chr07	irgsp1_rep	mRNA	20087170	20093360	.	-	.	ID=Os07t0520400-01;Name=Os07t0520400-01;Locus_id=Os07g0520400;Note=Similar to Potyviral helper component protease-interacting protein 2.;Transcript_evidence=AK241222 (DDBJ%2C Best hit);ORF_evidence=B8B6P1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J065124A13;TENOR=Os07t0520400-01;KEGG=Os07t0520400-01
Chr07	irgsp1_rep	five_prime_UTR	20093093	20093360	.	-	.	Parent=Os07t0520400-01
Chr07	irgsp1_rep	CDS	20092307	20093092	.	-	0	Parent=Os07t0520400-01
Chr07	irgsp1_rep	CDS	20091335	20091526	.	-	0	Parent=Os07t0520400-01
Chr07	irgsp1_rep	CDS	20091130	20091202	.	-	0	Parent=Os07t0520400-01
Chr07	irgsp1_rep	CDS	20090460	20091040	.	-	2	Parent=Os07t0520400-01
Chr07	irgsp1_rep	CDS	20088940	20089800	.	-	0	Parent=Os07t0520400-01
Chr07	irgsp1_rep	CDS	20087394	20087588	.	-	0	Parent=Os07t0520400-01
Chr07	irgsp1_rep	three_prime_UTR	20087170	20087393	.	-	.	Parent=Os07t0520400-01
Chr07	irgsp1_rep	mRNA	20106812	20109678	.	+	.	ID=Os07t0520600-01;Name=Os07t0520600-01;Locus_id=Os07g0520600;Note=Conserved hypothetical protein.;Transcript_evidence=AK072131 (DDBJ%2C Best hit);ORF_evidence=B8B6P2 (UniProt);NIAS_FLcDNA=J013125G18;TENOR=Os07t0520600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	20106812	20108947	.	+	.	Parent=Os07t0520600-01
Chr07	irgsp1_rep	CDS	20108948	20109520	.	+	0	Parent=Os07t0520600-01
Chr07	irgsp1_rep	three_prime_UTR	20109521	20109678	.	+	.	Parent=Os07t0520600-01
Chr07	irgsp1_rep	mRNA	20106875	20109705	.	+	.	ID=Os07t0520600-02;Name=Os07t0520600-02;Locus_id=Os07g0520600;Note=Conserved hypothetical protein.;Transcript_evidence=AK120609 (DDBJ%2C Best hit);ORF_evidence=B8B6P2 (UniProt);NIAS_FLcDNA=J013151G08;TENOR=Os07t0520600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	20106875	20108947	.	+	.	Parent=Os07t0520600-02
Chr07	irgsp1_rep	CDS	20108948	20109520	.	+	0	Parent=Os07t0520600-02
Chr07	irgsp1_rep	three_prime_UTR	20109521	20109705	.	+	.	Parent=Os07t0520600-02
Chr07	irgsp1_rep	mRNA	20113612	20115182	.	+	.	ID=Os07t0520800-01;Name=Os07t0520800-01;Locus_id=Os07g0520800;Note=Ankyrin repeat-containing domain domain containing protein.;Transcript_evidence=AK062845 (DDBJ%2C Best hit);ORF_evidence=A3BKF2 (UniProt);InterPro=Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=001-107-H09;TENOR=Os07t0520800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	20113612	20113612	.	+	.	Parent=Os07t0520800-01
Chr07	irgsp1_rep	CDS	20113613	20113852	.	+	0	Parent=Os07t0520800-01
Chr07	irgsp1_rep	CDS	20114596	20114853	.	+	0	Parent=Os07t0520800-01
Chr07	irgsp1_rep	three_prime_UTR	20114854	20115182	.	+	.	Parent=Os07t0520800-01
Chr07	irgsp1_rep	mRNA	20115611	20123094	.	-	.	ID=Os07t0520900-01;Name=Os07t0520900-01;Locus_id=Os07g0520900;Oryzabase Gene Symbol Synonym(s)=OspPLAI%2C pPLAI;Oryzabase Gene Name Synonym(s)=Patatin-related phospholipase A I;Note=Similar to galactolipase/ phospholipase.;Transcript_evidence=AK120277 (DDBJ%2C Best hit);ORF_evidence=NP_176378.4 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013049C19;Oryzabase=19871;TENOR=Os07t0520900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	20122965	20123094	.	-	.	Parent=Os07t0520900-01
Chr07	irgsp1_rep	CDS	20122350	20122964	.	-	0	Parent=Os07t0520900-01
Chr07	irgsp1_rep	CDS	20121578	20121725	.	-	0	Parent=Os07t0520900-01
Chr07	irgsp1_rep	CDS	20121340	20121418	.	-	2	Parent=Os07t0520900-01
Chr07	irgsp1_rep	CDS	20121094	20121247	.	-	1	Parent=Os07t0520900-01
Chr07	irgsp1_rep	CDS	20120790	20120999	.	-	0	Parent=Os07t0520900-01
Chr07	irgsp1_rep	CDS	20120426	20120680	.	-	0	Parent=Os07t0520900-01
Chr07	irgsp1_rep	three_prime_UTR	20120186	20120425	.	-	.	Parent=Os07t0520900-01
Chr07	irgsp1_rep	three_prime_UTR	20119819	20120079	.	-	.	Parent=Os07t0520900-01
Chr07	irgsp1_rep	three_prime_UTR	20119628	20119746	.	-	.	Parent=Os07t0520900-01
Chr07	irgsp1_rep	three_prime_UTR	20119387	20119543	.	-	.	Parent=Os07t0520900-01
Chr07	irgsp1_rep	three_prime_UTR	20118993	20119236	.	-	.	Parent=Os07t0520900-01
Chr07	irgsp1_rep	three_prime_UTR	20118725	20118861	.	-	.	Parent=Os07t0520900-01
Chr07	irgsp1_rep	three_prime_UTR	20117846	20117984	.	-	.	Parent=Os07t0520900-01
Chr07	irgsp1_rep	three_prime_UTR	20117512	20117718	.	-	.	Parent=Os07t0520900-01
Chr07	irgsp1_rep	three_prime_UTR	20116965	20117430	.	-	.	Parent=Os07t0520900-01
Chr07	irgsp1_rep	three_prime_UTR	20116652	20116868	.	-	.	Parent=Os07t0520900-01
Chr07	irgsp1_rep	three_prime_UTR	20116491	20116580	.	-	.	Parent=Os07t0520900-01
Chr07	irgsp1_rep	three_prime_UTR	20115611	20115970	.	-	.	Parent=Os07t0520900-01
Chr07	irgsp1_rep	mRNA	20115227	20123058	.	-	.	ID=Os07t0520900-02;Name=Os07t0520900-02;Locus_id=Os07g0520900;Oryzabase Gene Symbol Synonym(s)=OspPLAI%2C pPLAI;Oryzabase Gene Name Synonym(s)=Patatin-related phospholipase A I;Note=Similar to predicted protein.;Transcript_evidence=AK243066 (DDBJ%2C Best hit);ORF_evidence=NP_176378.4 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: metabolic process (GO:0008152),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),Patatin/Phospholipase A2-related (IPR002641),Leucine-rich repeat%2C typical subtype (IPR003591),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),Acyl transferase/acyl hydrolase/lysophospholipase (IPR016035);NIAS_FLcDNA=J100016E10;Oryzabase=19871;TENOR=Os07t0520900-02;KEGG=Os07t0520900-02
Chr07	irgsp1_rep	five_prime_UTR	20122965	20123058	.	-	.	Parent=Os07t0520900-02
Chr07	irgsp1_rep	CDS	20122350	20122964	.	-	0	Parent=Os07t0520900-02
Chr07	irgsp1_rep	CDS	20121578	20121725	.	-	0	Parent=Os07t0520900-02
Chr07	irgsp1_rep	CDS	20121340	20121418	.	-	2	Parent=Os07t0520900-02
Chr07	irgsp1_rep	CDS	20121094	20121247	.	-	1	Parent=Os07t0520900-02
Chr07	irgsp1_rep	CDS	20120790	20120999	.	-	0	Parent=Os07t0520900-02
Chr07	irgsp1_rep	CDS	20120434	20120680	.	-	0	Parent=Os07t0520900-02
Chr07	irgsp1_rep	CDS	20120186	20120347	.	-	2	Parent=Os07t0520900-02
Chr07	irgsp1_rep	CDS	20119819	20120079	.	-	2	Parent=Os07t0520900-02
Chr07	irgsp1_rep	CDS	20119628	20119746	.	-	2	Parent=Os07t0520900-02
Chr07	irgsp1_rep	CDS	20119387	20119548	.	-	0	Parent=Os07t0520900-02
Chr07	irgsp1_rep	CDS	20118993	20119236	.	-	0	Parent=Os07t0520900-02
Chr07	irgsp1_rep	CDS	20118725	20118861	.	-	2	Parent=Os07t0520900-02
Chr07	irgsp1_rep	CDS	20117846	20117984	.	-	0	Parent=Os07t0520900-02
Chr07	irgsp1_rep	CDS	20117512	20117718	.	-	2	Parent=Os07t0520900-02
Chr07	irgsp1_rep	CDS	20116965	20117430	.	-	2	Parent=Os07t0520900-02
Chr07	irgsp1_rep	CDS	20116652	20116868	.	-	1	Parent=Os07t0520900-02
Chr07	irgsp1_rep	CDS	20116467	20116580	.	-	0	Parent=Os07t0520900-02
Chr07	irgsp1_rep	three_prime_UTR	20116335	20116466	.	-	.	Parent=Os07t0520900-02
Chr07	irgsp1_rep	three_prime_UTR	20115227	20115970	.	-	.	Parent=Os07t0520900-02
Chr07	irgsp1_rep	mRNA	20127038	20128741	.	+	.	ID=Os07t0521000-01;Name=Os07t0521000-01;Locus_id=Os07g0521000;Oryzabase Gene Symbol Synonym(s)=sdh3%2C SDH3;Oryzabase Gene Name Synonym(s)=mitochondrial Complex II subunit SDH3%2C SUCCINATE DEHYDROGENASE SUBUNIT 3;Note=Succinate dehydrogenase subunit 3.;Transcript_evidence=AK058482 (DDBJ%2C Best hit);ORF_evidence=Q94FP1 (UniProt);GO=Molecular Function: oxidoreductase activity%2C acting on the CH-CH group of donors (GO:0016627);InterPro=Succinate dehydrogenase/Fumarate reductase%2C transmembrane subunit (IPR000701);NIAS_FLcDNA=001-016-D05;Oryzabase=20545;Expression=AK058482;TENOR=Os07t0521000-01;KEGG=Os07t0521000-01
Chr07	irgsp1_rep	five_prime_UTR	20127038	20127146	.	+	.	Parent=Os07t0521000-01
Chr07	irgsp1_rep	five_prime_UTR	20127882	20127883	.	+	.	Parent=Os07t0521000-01
Chr07	irgsp1_rep	CDS	20127884	20127947	.	+	0	Parent=Os07t0521000-01
Chr07	irgsp1_rep	CDS	20128322	20128647	.	+	2	Parent=Os07t0521000-01
Chr07	irgsp1_rep	three_prime_UTR	20128648	20128741	.	+	.	Parent=Os07t0521000-01
Chr07	irgsp1_rep	mRNA	20129648	20131993	.	-	.	ID=Os07t0521100-01;Name=Os07t0521100-01;Locus_id=Os07g0521100;Note=Leucine-rich repeat%2C typical subtype containing protein.;Transcript_evidence=AK110812 (DDBJ%2C Best hit);ORF_evidence=Q7F1B2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=002-171-F06;Expression=AK110812;TENOR=Os07t0521100-01;KEGG=Os07t0521100-01
Chr07	irgsp1_rep	five_prime_UTR	20131992	20131993	.	-	.	Parent=Os07t0521100-01
Chr07	irgsp1_rep	CDS	20130255	20131991	.	-	0	Parent=Os07t0521100-01
Chr07	irgsp1_rep	three_prime_UTR	20129917	20130254	.	-	.	Parent=Os07t0521100-01
Chr07	irgsp1_rep	three_prime_UTR	20129648	20129821	.	-	.	Parent=Os07t0521100-01
Chr07	irgsp1_rep	mRNA	20149389	20152787	.	-	.	ID=Os07t0521300-01;Name=Os07t0521300-01;Locus_id=Os07g0521300;Note=Conserved hypothetical protein.;Transcript_evidence=AK106593 (DDBJ%2C Best hit);ORF_evidence=Q7XIQ0 (UniProt);NIAS_FLcDNA=002-111-H05;Expression=AK106593;TENOR=Os07t0521300-01;KEGG=Os07t0521300-01
Chr07	irgsp1_rep	five_prime_UTR	20152787	20152787	.	-	.	Parent=Os07t0521300-01
Chr07	irgsp1_rep	CDS	20151439	20152786	.	-	0	Parent=Os07t0521300-01
Chr07	irgsp1_rep	CDS	20151251	20151351	.	-	2	Parent=Os07t0521300-01
Chr07	irgsp1_rep	three_prime_UTR	20151250	20151250	.	-	.	Parent=Os07t0521300-01
Chr07	irgsp1_rep	three_prime_UTR	20149389	20149815	.	-	.	Parent=Os07t0521300-01
Chr07	irgsp1_rep	mRNA	20157460	20162635	.	-	.	ID=Os07t0521400-01;Name=Os07t0521400-01;Locus_id=Os07g0521400;Note=Hypothetical protein.;Transcript_evidence=AK110873 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-172-F09;Expression=AK110873;TENOR=Os07t0521400-01;KEGG=Os07t0521400-01
Chr07	irgsp1_rep	five_prime_UTR	20162412	20162635	.	-	.	Parent=Os07t0521400-01
Chr07	irgsp1_rep	five_prime_UTR	20162210	20162340	.	-	.	Parent=Os07t0521400-01
Chr07	irgsp1_rep	five_prime_UTR	20158348	20158717	.	-	.	Parent=Os07t0521400-01
Chr07	irgsp1_rep	CDS	20157961	20158347	.	-	0	Parent=Os07t0521400-01
Chr07	irgsp1_rep	three_prime_UTR	20157460	20157960	.	-	.	Parent=Os07t0521400-01
Chr07	irgsp1_rep	mRNA	20157774	20160904	.	+	.	ID=Os07t0521500-01;Name=Os07t0521500-01;Locus_id=Os07g0521500;Note=NB-ARC domain containing protein.;Transcript_evidence=AK241631 (DDBJ%2C Best hit);ORF_evidence=NP_001059809.2 (RefSeq);GO=Biological Process: defense response (GO:0006952),Molecular Function: protein binding (GO:0005515),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),Leucine-rich repeat (IPR001611),NB-ARC (IPR002182);NIAS_FLcDNA=J065187O08;TENOR=Os07t0521500-01;KEGG=Os07t0521500-01
Chr07	irgsp1_rep	five_prime_UTR	20157774	20157910	.	+	.	Parent=Os07t0521500-01
Chr07	irgsp1_rep	CDS	20157911	20160508	.	+	0	Parent=Os07t0521500-01
Chr07	irgsp1_rep	three_prime_UTR	20160509	20160904	.	+	.	Parent=Os07t0521500-01
Chr07	irgsp1_rep	mRNA	20165716	20170161	.	-	.	ID=Os07t0521600-01;Name=Os07t0521600-01;Locus_id=Os07g0521600;Note=Similar to NBS-LRR protein (Fragment).;Transcript_evidence=AK120069 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013003D09;Expression=AK120069;TENOR=Os07t0521600-01;KEGG=Os07t0521600-01
Chr07	irgsp1_rep	five_prime_UTR	20170142	20170161	.	-	.	Parent=Os07t0521600-01
Chr07	irgsp1_rep	CDS	20165876	20170141	.	-	0	Parent=Os07t0521600-01
Chr07	irgsp1_rep	three_prime_UTR	20165716	20165875	.	-	.	Parent=Os07t0521600-01
Chr07	irgsp1_rep	mRNA	20164251	20168679	.	-	.	ID=Os07t0521600-02;Name=Os07t0521600-02;Locus_id=Os07g0521600;Note=Similar to NBS-LRR protein (Fragment).;Transcript_evidence=AK119347 (DDBJ%2C Best hit);ORF_evidence=Q84ZR6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=001-131-E05;Expression=AK119347;TENOR=Os07t0521600-02;KEGG=Os07t0521600-02
Chr07	irgsp1_rep	five_prime_UTR	20168678	20168679	.	-	.	Parent=Os07t0521600-02
Chr07	irgsp1_rep	CDS	20165876	20168677	.	-	0	Parent=Os07t0521600-02
Chr07	irgsp1_rep	three_prime_UTR	20165804	20165875	.	-	.	Parent=Os07t0521600-02
Chr07	irgsp1_rep	three_prime_UTR	20164251	20164674	.	-	.	Parent=Os07t0521600-02
Chr07	irgsp1_rep	mRNA	20173960	20177774	.	+	.	ID=Os07t0521800-01;Name=Os07t0521800-01;Locus_id=Os07g0521800;Note=NB-ARC domain containing protein.;Transcript_evidence=AK243333 (DDBJ%2C Best hit);ORF_evidence=NP_001059812.2 (RefSeq);GO=Biological Process: defense response (GO:0006952),Molecular Function: protein binding (GO:0005515),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),Leucine-rich repeat (IPR001611),NB-ARC (IPR002182);NIAS_FLcDNA=J100058N12;TENOR=Os07t0521800-01;KEGG=Os07t0521800-01
Chr07	irgsp1_rep	five_prime_UTR	20173960	20174057	.	+	.	Parent=Os07t0521800-01
Chr07	irgsp1_rep	CDS	20174058	20177168	.	+	0	Parent=Os07t0521800-01
Chr07	irgsp1_rep	three_prime_UTR	20177169	20177774	.	+	.	Parent=Os07t0521800-01
Chr07	irgsp1_rep	mRNA	20180050	20180868	.	-	.	ID=Os07t0521950-01;Name=Os07t0521950-01;Locus_id=Os07g0521950;Note=Non-protein coding transcript.;Transcript_evidence=AK240978 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065048J02;TENOR=Os07t0521950-01
Chr07	irgsp1_rep	exon	20180050	20180868	.	-	.	Parent=Os07t0521950-01
Chr07	irgsp1_rep	mRNA	20214297	20218689	.	+	.	ID=Os07t0522500-01;Name=Os07t0522500-01;Locus_id=Os07g0522500;CGSNL Gene Symbol=PDR5;CGSNL Gene Name=PLEIOTROPIC DRUG RESISTANCE 5;Oryzabase Gene Symbol Synonym(s)=ABCG43%2C OsABCG43%2C ABCG43/PDR5%2C OsPDR5;Oryzabase Gene Name Synonym(s)=ABC transporter G43%2C pleiotropic drug resistance 5%2C ABC transporter superfamily ABCG subgroup member 43;Note=Similar to PDR6 ABC transporter.;Transcript_evidence=AK105311 (DDBJ%2C Best hit);ORF_evidence=B9FXK4 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887);InterPro=ABC transporter-like (IPR003439),ABC-2 type transporter (IPR013525);NIAS_FLcDNA=001-117-C08;Oryzabase=9426;Expression=AK105311;TENOR=Os07t0522500-01;KEGG=Os07t0522500-01
Chr07	irgsp1_rep	five_prime_UTR	20214297	20214297	.	+	.	Parent=Os07t0522500-01
Chr07	irgsp1_rep	CDS	20214298	20214354	.	+	0	Parent=Os07t0522500-01
Chr07	irgsp1_rep	CDS	20214972	20215262	.	+	0	Parent=Os07t0522500-01
Chr07	irgsp1_rep	CDS	20215353	20215436	.	+	0	Parent=Os07t0522500-01
Chr07	irgsp1_rep	CDS	20216466	20216599	.	+	0	Parent=Os07t0522500-01
Chr07	irgsp1_rep	CDS	20216745	20216972	.	+	1	Parent=Os07t0522500-01
Chr07	irgsp1_rep	CDS	20217120	20217291	.	+	1	Parent=Os07t0522500-01
Chr07	irgsp1_rep	CDS	20217880	20218134	.	+	0	Parent=Os07t0522500-01
Chr07	irgsp1_rep	CDS	20218226	20218498	.	+	0	Parent=Os07t0522500-01
Chr07	irgsp1_rep	three_prime_UTR	20218499	20218689	.	+	.	Parent=Os07t0522500-01
Chr07	irgsp1_rep	mRNA	20221077	20223532	.	+	.	ID=Os07t0522600-01;Name=Os07t0522600-01;Locus_id=Os07g0522600;Oryzabase Gene Symbol Synonym(s)=OsGLR3.7%2C GLR3.7;Oryzabase Gene Name Synonym(s)=Glutamate receptor homolog 3.7%2C Glutamate receptor 3.4;Note=Similar to glutamate-gated kainate-type ion channel receptor subunit GluR5.;Transcript_evidence=AK103813 (DDBJ%2C Best hit);ORF_evidence=B9FXK5 (UniProt);GO=Biological Process: G-protein coupled receptor protein signaling pathway (GO:0007186),Cellular Component: integral to membrane (GO:0016021),Molecular Function: GABA-B receptor activity (GO:0004965);InterPro=Extracellular ligand-binding receptor (IPR001828),GPCR%2C family 3%2C gamma-aminobutyric acid receptor%2C type B (IPR002455);NIAS_FLcDNA=J033147C01;Oryzabase=15504;TENOR=Os07t0522600-01
Chr07	irgsp1_rep	five_prime_UTR	20221077	20221749	.	+	.	Parent=Os07t0522600-01
Chr07	irgsp1_rep	CDS	20221750	20222041	.	+	0	Parent=Os07t0522600-01
Chr07	irgsp1_rep	CDS	20222540	20223532	.	+	2	Parent=Os07t0522600-01
Chr07	irgsp1_rep	mRNA	20221099	20225924	.	+	.	ID=Os07t0522600-02;Name=Os07t0522600-02;Locus_id=Os07g0522600;Oryzabase Gene Symbol Synonym(s)=OsGLR3.7%2C GLR3.7;Oryzabase Gene Name Synonym(s)=Glutamate receptor homolog 3.7%2C Glutamate receptor 3.4;Note=Similar to Glutamate receptor 3.4 precursor (Ligand-gated ion channel 3.4) (AtGLR4). Splice isoform 2.;Transcript_evidence=AK067405 (DDBJ%2C Best hit);ORF_evidence=B9FXK5 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: G-protein coupled receptor protein signaling pathway (GO:0007186),Cellular Component: integral to membrane (GO:0016021),Cellular Component: outer membrane-bounded periplasmic space (GO:0030288),Molecular Function: GABA-B receptor activity (GO:0004965),Molecular Function: transporter activity (GO:0005215);InterPro=Extracellular solute-binding protein%2C family 3 (IPR001638),Extracellular ligand-binding receptor (IPR001828),GPCR%2C family 3%2C gamma-aminobutyric acid receptor%2C type B (IPR002455);NIAS_FLcDNA=J013106I10;Oryzabase=15504;Expression=AK067405;TENOR=Os07t0522600-02;KEGG=Os07t0522600-02
Chr07	irgsp1_rep	five_prime_UTR	20221099	20221300	.	+	.	Parent=Os07t0522600-02
Chr07	irgsp1_rep	five_prime_UTR	20221424	20221749	.	+	.	Parent=Os07t0522600-02
Chr07	irgsp1_rep	CDS	20221750	20222041	.	+	0	Parent=Os07t0522600-02
Chr07	irgsp1_rep	CDS	20222540	20223882	.	+	2	Parent=Os07t0522600-02
Chr07	irgsp1_rep	CDS	20223980	20224257	.	+	0	Parent=Os07t0522600-02
Chr07	irgsp1_rep	CDS	20224351	20224351	.	+	1	Parent=Os07t0522600-02
Chr07	irgsp1_rep	three_prime_UTR	20224352	20224400	.	+	.	Parent=Os07t0522600-02
Chr07	irgsp1_rep	three_prime_UTR	20224487	20224893	.	+	.	Parent=Os07t0522600-02
Chr07	irgsp1_rep	three_prime_UTR	20224980	20225924	.	+	.	Parent=Os07t0522600-02
Chr07	irgsp1_rep	mRNA	20250388	20252873	.	+	.	ID=Os07t0522900-01;Name=Os07t0522900-01;Locus_id=Os07g0522900;Note=Similar to SGP1 monomeric G-protein.;Transcript_evidence=AK071154 (DDBJ%2C Best hit);ORF_evidence=NP_001151110.1 (RefSeq);GO=Biological Process: small GTPase mediated signal transduction (GO:0007264),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806);NIAS_FLcDNA=J023076O15;Expression=AK071154;TENOR=Os07t0522900-01;KEGG=Os07t0522900-01
Chr07	irgsp1_rep	five_prime_UTR	20250388	20250388	.	+	.	Parent=Os07t0522900-01
Chr07	irgsp1_rep	CDS	20250389	20250509	.	+	0	Parent=Os07t0522900-01
Chr07	irgsp1_rep	CDS	20250651	20250747	.	+	2	Parent=Os07t0522900-01
Chr07	irgsp1_rep	CDS	20250863	20250902	.	+	1	Parent=Os07t0522900-01
Chr07	irgsp1_rep	CDS	20251227	20251310	.	+	0	Parent=Os07t0522900-01
Chr07	irgsp1_rep	CDS	20252545	20252709	.	+	0	Parent=Os07t0522900-01
Chr07	irgsp1_rep	three_prime_UTR	20252710	20252873	.	+	.	Parent=Os07t0522900-01
Chr07	irgsp1_rep	mRNA	20254706	20254967	.	-	.	ID=Os07t0523000-00;Name=Os07t0523000-00;Locus_id=Os07g0523000;Note=Hypothetical protein.;Transcript_evidence=EU947737 (DDBJ);ORF_evidence=GeneMark;TENOR=Os07t0523000-00
Chr07	irgsp1_rep	CDS	20254706	20254967	.	-	0	Parent=Os07t0523000-00
Chr07	irgsp1_rep	mRNA	20256757	20258545	.	+	.	ID=Os07t0523100-00;Name=Os07t0523100-00;Locus_id=Os07g0523100;Note=Similar to 60S ribosomal protein L44.;Transcript_evidence=AK251419 (DDBJ);ORF_evidence=NP_001151192.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L44e (IPR000552),Ribosomal protein%2C zinc-binding domain (IPR011332);TENOR=Os07t0523100-00
Chr07	irgsp1_rep	five_prime_UTR	20256757	20256889	.	+	.	Parent=Os07t0523100-00
Chr07	irgsp1_rep	CDS	20256890	20256892	.	+	0	Parent=Os07t0523100-00
Chr07	irgsp1_rep	CDS	20257731	20257910	.	+	0	Parent=Os07t0523100-00
Chr07	irgsp1_rep	CDS	20258108	20258182	.	+	0	Parent=Os07t0523100-00
Chr07	irgsp1_rep	CDS	20258275	20258334	.	+	0	Parent=Os07t0523100-00
Chr07	irgsp1_rep	three_prime_UTR	20258335	20258545	.	+	.	Parent=Os07t0523100-00
Chr07	irgsp1_rep	mRNA	20261175	20269470	.	+	.	ID=Os07t0523150-00;Name=Os07t0523150-00;Locus_id=Os07g0523150;Note=Similar to 60S ribosomal protein L44.;Transcript_evidence=CU406489 (DDBJ%2C Secondary hit);ORF_evidence=NP_001151192.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L44e (IPR000552),Ribosomal protein%2C zinc-binding domain (IPR011332);TENOR=Os07t0523150-00
Chr07	irgsp1_rep	five_prime_UTR	20261175	20261279	.	+	.	Parent=Os07t0523150-00
Chr07	irgsp1_rep	CDS	20261280	20261282	.	+	0	Parent=Os07t0523150-00
Chr07	irgsp1_rep	CDS	20262101	20262280	.	+	0	Parent=Os07t0523150-00
Chr07	irgsp1_rep	CDS	20262470	20262544	.	+	0	Parent=Os07t0523150-00
Chr07	irgsp1_rep	CDS	20262641	20262700	.	+	0	Parent=Os07t0523150-00
Chr07	irgsp1_rep	three_prime_UTR	20262701	20262794	.	+	.	Parent=Os07t0523150-00
Chr07	irgsp1_rep	three_prime_UTR	20269378	20269470	.	+	.	Parent=Os07t0523150-00
Chr07	irgsp1_rep	mRNA	20265635	20265892	.	-	.	ID=Os07t0523200-00;Name=Os07t0523200-00;Locus_id=Os07g0523200;Note=Hypothetical protein.;Transcript_evidence=EU947737 (DDBJ);ORF_evidence=GeneMark;TENOR=Os07t0523200-00
Chr07	irgsp1_rep	five_prime_UTR	20265846	20265892	.	-	.	Parent=Os07t0523200-00
Chr07	irgsp1_rep	CDS	20265635	20265845	.	-	0	Parent=Os07t0523200-00
Chr07	irgsp1_rep	mRNA	20274858	20275820	.	+	.	ID=Os07t0523300-01;Name=Os07t0523300-01;Locus_id=Os07g0523300;CGSNL Gene Symbol=RPL44;CGSNL Gene Name=RIBOSOMAL PROTEIN L44;Oryzabase Gene Symbol Synonym(s)=OsRPL44;Oryzabase Gene Name Synonym(s)=ribosomal protein  L44%2C ribosomal protein large subunit 44;Note=Similar to 60S ribosomal protein L44.;Transcript_evidence=AK058924 (DDBJ%2C Best hit);ORF_evidence=NP_001151192.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L44e (IPR000552),Ribosomal protein%2C zinc-binding domain (IPR011332);NIAS_FLcDNA=001-009-C01;Oryzabase=22208;Expression=AK058924;TENOR=Os07t0523300-01;KEGG=Os07t0523300-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	20274858	20274858	.	+	.	Parent=Os07t0523300-01
Chr07	irgsp1_rep	CDS	20274859	20275011	.	+	0	Parent=Os07t0523300-01
Chr07	irgsp1_rep	CDS	20275199	20275273	.	+	0	Parent=Os07t0523300-01
Chr07	irgsp1_rep	CDS	20275374	20275433	.	+	0	Parent=Os07t0523300-01
Chr07	irgsp1_rep	three_prime_UTR	20275434	20275820	.	+	.	Parent=Os07t0523300-01
Chr07	irgsp1_rep	mRNA	20275220	20275674	.	+	.	ID=Os07t0523300-02;Name=Os07t0523300-02;Locus_id=Os07g0523300;CGSNL Gene Symbol=RPL44;CGSNL Gene Name=RIBOSOMAL PROTEIN L44;Oryzabase Gene Symbol Synonym(s)=OsRPL44;Oryzabase Gene Name Synonym(s)=ribosomal protein  L44%2C ribosomal protein large subunit 44;Note=Similar to 60S ribosomal protein L44.;Transcript_evidence=AK058830 (DDBJ%2C Best hit);ORF_evidence=NP_001151192.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L44e (IPR000552);NIAS_FLcDNA=001-004-A07;Oryzabase=22208;Expression=AK058830;TENOR=Os07t0523300-02;KEGG=Os07t0523300-02;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	20275220	20275273	.	+	0	Parent=Os07t0523300-02
Chr07	irgsp1_rep	CDS	20275374	20275433	.	+	0	Parent=Os07t0523300-02
Chr07	irgsp1_rep	three_prime_UTR	20275434	20275674	.	+	.	Parent=Os07t0523300-02
Chr07	irgsp1_rep	mRNA	20275422	20275644	.	+	.	ID=Os07t0523300-03;Name=Os07t0523300-03;Locus_id=Os07g0523300;CGSNL Gene Symbol=RPL44;CGSNL Gene Name=RIBOSOMAL PROTEIN L44;Oryzabase Gene Symbol Synonym(s)=OsRPL44;Oryzabase Gene Name Synonym(s)=ribosomal protein  L44%2C ribosomal protein large subunit 44;Note=Non-protein coding transcript.;Transcript_evidence=AK060727 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-031-H03;Oryzabase=22208;TENOR=Os07t0523300-03
Chr07	irgsp1_rep	exon	20275422	20275644	.	+	.	Parent=Os07t0523300-03
Chr07	irgsp1_rep	mRNA	20277401	20279936	.	-	.	ID=Os07t0523400-01;Name=Os07t0523400-01;Locus_id=Os07g0523400;CGSNL Gene Symbol=GPT2-3;CGSNL Gene Name=GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2-3;Oryzabase Gene Symbol Synonym(s)=OsGPT2-3;Note=Glucose-6-phosphate/phosphate-translocator precursor.;Transcript_evidence=AK070124 (DDBJ%2C Best hit);ORF_evidence=NP_001147439.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=J023045C15;Oryzabase=8724;Expression=AK070124;TENOR=Os07t0523400-01;KEGG=Os07t0523400-01
Chr07	irgsp1_rep	five_prime_UTR	20279816	20279936	.	-	.	Parent=Os07t0523400-01
Chr07	irgsp1_rep	CDS	20279195	20279815	.	-	0	Parent=Os07t0523400-01
Chr07	irgsp1_rep	CDS	20278842	20279075	.	-	0	Parent=Os07t0523400-01
Chr07	irgsp1_rep	three_prime_UTR	20277764	20278841	.	-	.	Parent=Os07t0523400-01
Chr07	irgsp1_rep	three_prime_UTR	20277401	20277656	.	-	.	Parent=Os07t0523400-01
Chr07	irgsp1_rep	mRNA	20293437	20293891	.	+	.	ID=Os07t0523500-01;Name=Os07t0523500-01;Locus_id=Os07g0523500;Note=Similar to 60S ribosomal protein L44.;Transcript_evidence=AK058830 (DDBJ%2C Best hit);ORF_evidence=NP_001151192.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L44e (IPR000552);NIAS_FLcDNA=001-004-A07;Expression=AK058830;TENOR=Os07t0523500-01;KEGG=Os07t0523500-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	20293437	20293490	.	+	0	Parent=Os07t0523500-01
Chr07	irgsp1_rep	CDS	20293591	20293650	.	+	0	Parent=Os07t0523500-01
Chr07	irgsp1_rep	three_prime_UTR	20293651	20293891	.	+	.	Parent=Os07t0523500-01
Chr07	irgsp1_rep	mRNA	20293075	20294037	.	+	.	ID=Os07t0523500-02;Name=Os07t0523500-02;Locus_id=Os07g0523500;Note=Similar to 60S ribosomal protein L44.;Transcript_evidence=AK058924 (DDBJ%2C Best hit);ORF_evidence=NP_001151192.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L44e (IPR000552),Ribosomal protein%2C zinc-binding domain (IPR011332);NIAS_FLcDNA=001-009-C01;Expression=AK058924;TENOR=Os07t0523500-02;KEGG=Os07t0523500-02
Chr07	irgsp1_rep	five_prime_UTR	20293075	20293075	.	+	.	Parent=Os07t0523500-02
Chr07	irgsp1_rep	CDS	20293076	20293228	.	+	0	Parent=Os07t0523500-02
Chr07	irgsp1_rep	CDS	20293416	20293490	.	+	0	Parent=Os07t0523500-02
Chr07	irgsp1_rep	CDS	20293591	20293650	.	+	0	Parent=Os07t0523500-02
Chr07	irgsp1_rep	three_prime_UTR	20293651	20294037	.	+	.	Parent=Os07t0523500-02
Chr07	irgsp1_rep	mRNA	20293639	20293861	.	+	.	ID=Os07t0523500-03;Name=Os07t0523500-03;Locus_id=Os07g0523500;Note=Non-protein coding transcript.;Transcript_evidence=AK060727 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-031-H03;TENOR=Os07t0523500-03
Chr07	irgsp1_rep	exon	20293639	20293861	.	+	.	Parent=Os07t0523500-03
Chr07	irgsp1_rep	mRNA	20295616	20297566	.	-	.	ID=Os07t0523600-01;Name=Os07t0523600-01;Locus_id=Os07g0523600;CGSNL Gene Symbol=GPT2;CGSNL Gene Name=GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2;Oryzabase Gene Symbol Synonym(s)=OsGPT2;Oryzabase Gene Name Synonym(s)=Glc-6-phosphate translocator2%2C Glc-6-phosphate translocator 2%2C glucose-6-phosphate transporter;Note=Similar to Glucose-6-phosphate/phosphate-translocator precursor.;Transcript_evidence=AK059906 (DDBJ%2C Best hit);ORF_evidence=NP_001147439.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215);InterPro=Drug/metabolite transporter (IPR000620),Tpt phosphate/phosphoenolpyruvate translocator (IPR004696),Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=006-208-H08;Oryzabase=13329,23072;Expression=AK059906;TENOR=Os07t0523600-01;KEGG=Os07t0523600-01
Chr07	irgsp1_rep	five_prime_UTR	20297565	20297566	.	-	.	Parent=Os07t0523600-01
Chr07	irgsp1_rep	CDS	20297412	20297564	.	-	0	Parent=Os07t0523600-01
Chr07	irgsp1_rep	CDS	20297067	20297292	.	-	0	Parent=Os07t0523600-01
Chr07	irgsp1_rep	CDS	20296568	20296790	.	-	2	Parent=Os07t0523600-01
Chr07	irgsp1_rep	CDS	20295981	20296194	.	-	1	Parent=Os07t0523600-01
Chr07	irgsp1_rep	CDS	20295862	20295873	.	-	0	Parent=Os07t0523600-01
Chr07	irgsp1_rep	three_prime_UTR	20295616	20295861	.	-	.	Parent=Os07t0523600-01
Chr07	irgsp1_rep	mRNA	20311655	20312109	.	+	.	ID=Os07t0523700-01;Name=Os07t0523700-01;Locus_id=Os07g0523700;Note=Similar to 60S ribosomal protein L44.;Transcript_evidence=AK058830 (DDBJ%2C Best hit);ORF_evidence=NP_001151192.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L44e (IPR000552);NIAS_FLcDNA=001-004-A07;Expression=AK058830;TENOR=Os07t0523700-01;KEGG=Os07t0523700-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	20311655	20311708	.	+	0	Parent=Os07t0523700-01
Chr07	irgsp1_rep	CDS	20311809	20311868	.	+	0	Parent=Os07t0523700-01
Chr07	irgsp1_rep	three_prime_UTR	20311869	20312109	.	+	.	Parent=Os07t0523700-01
Chr07	irgsp1_rep	mRNA	20311293	20312255	.	+	.	ID=Os07t0523700-02;Name=Os07t0523700-02;Locus_id=Os07g0523700;Note=Similar to 60S ribosomal protein L44.;Transcript_evidence=AK058924 (DDBJ%2C Best hit);ORF_evidence=NP_001151192.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L44e (IPR000552),Ribosomal protein%2C zinc-binding domain (IPR011332);NIAS_FLcDNA=001-009-C01;Expression=AK058924;TENOR=Os07t0523700-02;KEGG=Os07t0523700-02
Chr07	irgsp1_rep	five_prime_UTR	20311293	20311293	.	+	.	Parent=Os07t0523700-02
Chr07	irgsp1_rep	CDS	20311294	20311446	.	+	0	Parent=Os07t0523700-02
Chr07	irgsp1_rep	CDS	20311634	20311708	.	+	0	Parent=Os07t0523700-02
Chr07	irgsp1_rep	CDS	20311809	20311868	.	+	0	Parent=Os07t0523700-02
Chr07	irgsp1_rep	three_prime_UTR	20311869	20312255	.	+	.	Parent=Os07t0523700-02
Chr07	irgsp1_rep	mRNA	20311857	20312079	.	+	.	ID=Os07t0523700-03;Name=Os07t0523700-03;Locus_id=Os07g0523700;Note=Non-protein coding transcript.;Transcript_evidence=AK060727 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-031-H03;TENOR=Os07t0523700-03
Chr07	irgsp1_rep	exon	20311857	20312079	.	+	.	Parent=Os07t0523700-03
Chr07	irgsp1_rep	mRNA	20313834	20315784	.	-	.	ID=Os07t0523965-01;Name=Os07t0523965-01;Locus_id=Os07g0523965;Note=Similar to Glucose-6-phosphate/phosphate-translocator precursor.;Transcript_evidence=AK059906 (DDBJ%2C Best hit);ORF_evidence=NP_001147439.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215);InterPro=Drug/metabolite transporter (IPR000620),Tpt phosphate/phosphoenolpyruvate translocator (IPR004696),Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=006-208-H08;Expression=AK059906;TENOR=Os07t0523965-01;KEGG=Os07t0523965-01
Chr07	irgsp1_rep	five_prime_UTR	20315783	20315784	.	-	.	Parent=Os07t0523965-01
Chr07	irgsp1_rep	CDS	20315630	20315782	.	-	0	Parent=Os07t0523965-01
Chr07	irgsp1_rep	CDS	20315285	20315510	.	-	0	Parent=Os07t0523965-01
Chr07	irgsp1_rep	CDS	20314786	20315008	.	-	2	Parent=Os07t0523965-01
Chr07	irgsp1_rep	CDS	20314199	20314412	.	-	1	Parent=Os07t0523965-01
Chr07	irgsp1_rep	CDS	20314080	20314091	.	-	0	Parent=Os07t0523965-01
Chr07	irgsp1_rep	three_prime_UTR	20313834	20314079	.	-	.	Parent=Os07t0523965-01
Chr07	irgsp1_rep	mRNA	20327925	20329007	.	+	.	ID=Os07t0524000-01;Name=Os07t0524000-01;Locus_id=Os07g0524000;Note=Conserved hypothetical protein.;Transcript_evidence=AK063026 (DDBJ%2C Best hit);ORF_evidence=A2YM01 (UniProt);NIAS_FLcDNA=001-110-B10;TENOR=Os07t0524000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	20327925	20327925	.	+	.	Parent=Os07t0524000-01
Chr07	irgsp1_rep	CDS	20327926	20328339	.	+	0	Parent=Os07t0524000-01
Chr07	irgsp1_rep	CDS	20328499	20328564	.	+	0	Parent=Os07t0524000-01
Chr07	irgsp1_rep	CDS	20328714	20328887	.	+	0	Parent=Os07t0524000-01
Chr07	irgsp1_rep	three_prime_UTR	20328888	20329007	.	+	.	Parent=Os07t0524000-01
Chr07	irgsp1_rep	mRNA	20341006	20347644	.	+	.	ID=Os07t0524100-01;Name=Os07t0524100-01;Locus_id=Os07g0524100;Oryzabase Gene Symbol Synonym(s)=PDIL5%3B4%2C PDIL5-4%2C PDIL 5-4%2C OsPDIL5-4;Oryzabase Gene Name Synonym(s)=PROTEIN DISULFIDE ISOMERASE-LIKE 5%3B4%2C PROTEIN DISULFIDE ISOMERASE-LIKE 5-4%2C PDI-like protein 5-4;Note=Thioredoxin domain 2 containing protein.;Transcript_evidence=AK099660 (DDBJ%2C Best hit);ORF_evidence=Q69SA9 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454);InterPro=Thioredoxin-like fold (IPR012336),Domain of unknown function DUF1692 (IPR012936),Thioredoxin domain (IPR013766);NIAS_FLcDNA=J013066I12;Oryzabase=11905;Expression=AK099660;TENOR=Os07t0524100-01;KEGG=Os07t0524100-01
Chr07	irgsp1_rep	five_prime_UTR	20341006	20341239	.	+	.	Parent=Os07t0524100-01
Chr07	irgsp1_rep	CDS	20341240	20341280	.	+	0	Parent=Os07t0524100-01
Chr07	irgsp1_rep	CDS	20341613	20341703	.	+	1	Parent=Os07t0524100-01
Chr07	irgsp1_rep	CDS	20342316	20342410	.	+	0	Parent=Os07t0524100-01
Chr07	irgsp1_rep	CDS	20343045	20343102	.	+	1	Parent=Os07t0524100-01
Chr07	irgsp1_rep	CDS	20343645	20343829	.	+	0	Parent=Os07t0524100-01
Chr07	irgsp1_rep	CDS	20344169	20344226	.	+	1	Parent=Os07t0524100-01
Chr07	irgsp1_rep	CDS	20344391	20344431	.	+	0	Parent=Os07t0524100-01
Chr07	irgsp1_rep	CDS	20344514	20344588	.	+	1	Parent=Os07t0524100-01
Chr07	irgsp1_rep	CDS	20345877	20345933	.	+	1	Parent=Os07t0524100-01
Chr07	irgsp1_rep	CDS	20346059	20346125	.	+	1	Parent=Os07t0524100-01
Chr07	irgsp1_rep	CDS	20346333	20346479	.	+	0	Parent=Os07t0524100-01
Chr07	irgsp1_rep	CDS	20346565	20346789	.	+	0	Parent=Os07t0524100-01
Chr07	irgsp1_rep	CDS	20346911	20347072	.	+	0	Parent=Os07t0524100-01
Chr07	irgsp1_rep	CDS	20347149	20347226	.	+	0	Parent=Os07t0524100-01
Chr07	irgsp1_rep	CDS	20347314	20347391	.	+	0	Parent=Os07t0524100-01
Chr07	irgsp1_rep	three_prime_UTR	20347392	20347644	.	+	.	Parent=Os07t0524100-01
Chr07	irgsp1_rep	mRNA	20348669	20349531	.	+	.	ID=Os07t0524200-01;Name=Os07t0524200-01;Locus_id=Os07g0524200;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK108285 (DDBJ%2C Best hit);ORF_evidence=NP_001151664.1 (RefSeq);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=002-141-D05;Expression=AK108285;TENOR=Os07t0524200-01;KEGG=Os07t0524200-01
Chr07	irgsp1_rep	five_prime_UTR	20348669	20348749	.	+	.	Parent=Os07t0524200-01
Chr07	irgsp1_rep	CDS	20348750	20349391	.	+	0	Parent=Os07t0524200-01
Chr07	irgsp1_rep	three_prime_UTR	20349392	20349531	.	+	.	Parent=Os07t0524200-01
Chr07	irgsp1_rep	mRNA	20350794	20351457	.	-	.	ID=Os07t0524300-01;Name=Os07t0524300-01;Locus_id=Os07g0524300;Note=Hypothetical gene.;Transcript_evidence=AK069594 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023024A01;Expression=AK069594;TENOR=Os07t0524300-01;KEGG=Os07t0524300-01
Chr07	irgsp1_rep	five_prime_UTR	20351456	20351457	.	-	.	Parent=Os07t0524300-01
Chr07	irgsp1_rep	CDS	20350964	20351455	.	-	0	Parent=Os07t0524300-01
Chr07	irgsp1_rep	three_prime_UTR	20350794	20350963	.	-	.	Parent=Os07t0524300-01
Chr07	irgsp1_rep	mRNA	20351018	20351590	.	+	.	ID=Os07t0524400-00;Name=Os07t0524400-00;Locus_id=Os07g0524400;Note=Similar to harpin-induced protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001150368.1 (RefSeq);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);TENOR=Os07t0524400-00
Chr07	irgsp1_rep	CDS	20351018	20351590	.	+	0	Parent=Os07t0524400-00
Chr07	irgsp1_rep	mRNA	20365632	20367832	.	-	.	ID=Os07t0524900-01;Name=Os07t0524900-01;Locus_id=Os07g0524900;Note=Protein of unknown function DUF6%2C transmembrane domain containing protein.;Transcript_evidence=AK071512 (DDBJ%2C Best hit);ORF_evidence=NP_001151548.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=J023098N15;Expression=AK071512;TENOR=Os07t0524900-01;KEGG=Os07t0524900-01
Chr07	irgsp1_rep	five_prime_UTR	20367763	20367832	.	-	.	Parent=Os07t0524900-01
Chr07	irgsp1_rep	CDS	20367587	20367762	.	-	0	Parent=Os07t0524900-01
Chr07	irgsp1_rep	CDS	20367421	20367486	.	-	1	Parent=Os07t0524900-01
Chr07	irgsp1_rep	CDS	20367206	20367322	.	-	1	Parent=Os07t0524900-01
Chr07	irgsp1_rep	CDS	20366861	20367110	.	-	1	Parent=Os07t0524900-01
Chr07	irgsp1_rep	CDS	20366628	20366786	.	-	0	Parent=Os07t0524900-01
Chr07	irgsp1_rep	CDS	20366364	20366515	.	-	0	Parent=Os07t0524900-01
Chr07	irgsp1_rep	CDS	20365968	20366139	.	-	1	Parent=Os07t0524900-01
Chr07	irgsp1_rep	three_prime_UTR	20365632	20365967	.	-	.	Parent=Os07t0524900-01
Chr07	irgsp1_rep	mRNA	20392485	20395761	.	-	.	ID=Os07t0525100-01;Name=Os07t0525100-01;Locus_id=Os07g0525100;RAP-DB Gene Symbol Synonym(s)=OsCLIP;RAP-DB Gene Name Synonym(s)=OsCOLE1-INTERACTING PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsCLIP%2C CLIP;Oryzabase Gene Name Synonym(s)=OsCOLE1-INTERACTING PROTEIN%2C COLE1-INTERACTING PROTEIN;Note=Putative integral membrane protein containing EamA-like transporter family domains%2C Regulation of intracellular auxin transport;Transcript_evidence=AK242035,KT935169;ORF_evidence=Q69SA2;GO=Molecular Function: transmembrane transporter activity (GO:0022857),Cellular Component: membrane (GO:0016020),Cellular Component: integral component of membrane (GO:0016021);InterPro=WAT1-related protein (IPR030184),EamA domain (IPR000620);NIAS_FLcDNA=J075117L09;Manual Curation=June 10%2C 2016;Literature_PMID=27265035;Oryzabase=21349;TENOR=Os07t0525100-01;KEGG=Os07t0525100-01
Chr07	irgsp1_rep	five_prime_UTR	20395693	20395761	.	-	.	Parent=Os07t0525100-01
Chr07	irgsp1_rep	CDS	20395514	20395692	.	-	0	Parent=Os07t0525100-01
Chr07	irgsp1_rep	CDS	20395356	20395418	.	-	1	Parent=Os07t0525100-01
Chr07	irgsp1_rep	CDS	20394713	20394829	.	-	1	Parent=Os07t0525100-01
Chr07	irgsp1_rep	CDS	20394237	20394495	.	-	1	Parent=Os07t0525100-01
Chr07	irgsp1_rep	CDS	20393685	20393840	.	-	0	Parent=Os07t0525100-01
Chr07	irgsp1_rep	CDS	20393426	20393577	.	-	0	Parent=Os07t0525100-01
Chr07	irgsp1_rep	CDS	20392779	20392947	.	-	1	Parent=Os07t0525100-01
Chr07	irgsp1_rep	three_prime_UTR	20392485	20392778	.	-	.	Parent=Os07t0525100-01
Chr07	irgsp1_rep	mRNA	20404388	20406131	.	-	.	ID=Os07t0525300-00;Name=Os07t0525300-00;Locus_id=Os07g0525300;Note=Similar to HAT family dimerisation domain containing protein.;Transcript_evidence=tplb0053n06 (Wheat FLcDNA);ORF_evidence=Q7XE06 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677);InterPro=Zinc finger%2C BED-type predicted (IPR003656),Ribonuclease H-like (IPR012337);TENOR=Os07t0525300-00
Chr07	irgsp1_rep	CDS	20405416	20406131	.	-	0	Parent=Os07t0525300-00
Chr07	irgsp1_rep	CDS	20404388	20405318	.	-	1	Parent=Os07t0525300-00
Chr07	irgsp1_rep	mRNA	20410554	20418589	.	+	.	ID=Os07t0525400-01;Name=Os07t0525400-01;Locus_id=Os07g0525400;Note=RabGAP/TBC domain containing protein.;Transcript_evidence=AK121393 (DDBJ%2C Best hit);ORF_evidence=NP_001148078.1 (RefSeq);GO=Biological Process: regulation of Rab GTPase activity (GO:0032313),Cellular Component: intracellular (GO:0005622),Molecular Function: Rab GTPase activator activity (GO:0005097);InterPro=Rab-GAP/TBC domain (IPR000195);NIAS_FLcDNA=J023129N03;Expression=AK121393;TENOR=Os07t0525400-01;KEGG=Os07t0525400-01
Chr07	irgsp1_rep	five_prime_UTR	20410554	20410886	.	+	.	Parent=Os07t0525400-01
Chr07	irgsp1_rep	CDS	20410887	20410991	.	+	0	Parent=Os07t0525400-01
Chr07	irgsp1_rep	CDS	20414318	20414413	.	+	0	Parent=Os07t0525400-01
Chr07	irgsp1_rep	CDS	20414545	20414648	.	+	0	Parent=Os07t0525400-01
Chr07	irgsp1_rep	CDS	20415808	20416067	.	+	1	Parent=Os07t0525400-01
Chr07	irgsp1_rep	CDS	20416155	20416277	.	+	2	Parent=Os07t0525400-01
Chr07	irgsp1_rep	CDS	20416358	20416446	.	+	2	Parent=Os07t0525400-01
Chr07	irgsp1_rep	CDS	20416595	20416700	.	+	0	Parent=Os07t0525400-01
Chr07	irgsp1_rep	CDS	20416790	20416887	.	+	2	Parent=Os07t0525400-01
Chr07	irgsp1_rep	CDS	20417296	20417565	.	+	0	Parent=Os07t0525400-01
Chr07	irgsp1_rep	CDS	20417889	20417972	.	+	0	Parent=Os07t0525400-01
Chr07	irgsp1_rep	CDS	20418158	20418178	.	+	0	Parent=Os07t0525400-01
Chr07	irgsp1_rep	three_prime_UTR	20418179	20418589	.	+	.	Parent=Os07t0525400-01
Chr07	irgsp1_rep	mRNA	20420230	20421166	.	+	.	ID=Os07t0525450-00;Name=Os07t0525450-00;Locus_id=Os07g0525450;Note=Hypothetical gene.;Transcript_evidence=EU966441 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0525450-00;KEGG=Os07t0525450-00
Chr07	irgsp1_rep	five_prime_UTR	20420230	20420722	.	+	.	Parent=Os07t0525450-00
Chr07	irgsp1_rep	CDS	20420723	20421133	.	+	0	Parent=Os07t0525450-00
Chr07	irgsp1_rep	three_prime_UTR	20421134	20421166	.	+	.	Parent=Os07t0525450-00
Chr07	irgsp1_rep	mRNA	20414544	20417971	.	-	.	ID=Os07t0525451-00;Name=Os07t0525451-00;Locus_id=Os07g0525451;Note=Non-protein coding transcript.;Transcript_evidence=tplb0038o07 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os07t0525451-00
Chr07	irgsp1_rep	exon	20417873	20417971	.	-	.	Parent=Os07t0525451-00
Chr07	irgsp1_rep	exon	20417286	20417547	.	-	.	Parent=Os07t0525451-00
Chr07	irgsp1_rep	exon	20416788	20416878	.	-	.	Parent=Os07t0525451-00
Chr07	irgsp1_rep	exon	20416594	20416698	.	-	.	Parent=Os07t0525451-00
Chr07	irgsp1_rep	exon	20416348	20416445	.	-	.	Parent=Os07t0525451-00
Chr07	irgsp1_rep	exon	20416158	20416269	.	-	.	Parent=Os07t0525451-00
Chr07	irgsp1_rep	exon	20415813	20416072	.	-	.	Parent=Os07t0525451-00
Chr07	irgsp1_rep	exon	20414544	20414651	.	-	.	Parent=Os07t0525451-00
Chr07	irgsp1_rep	mRNA	20420138	20421500	.	-	.	ID=Os07t0525500-00;Name=Os07t0525500-00;Locus_id=Os07g0525500;CGSNL Gene Symbol=PKS13;CGSNL Gene Name=POLYKETIDE SYNTHASE 13;Oryzabase Gene Symbol Synonym(s)=OsPKS13%2C OsCHS13%2C CHS13;Oryzabase Gene Name Synonym(s)=polyketide synthase 13%2C Chalcone synthase 13;Note=Similar to chalcone synthase 8.;Transcript_evidence=GU724610 (DDBJ);ORF_evidence=NP_001149157.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Chalcone/stilbene synthase%2C N-terminal (IPR001099),Polyketide synthase%2C type III (IPR011141),Chalcone/stilbene synthase%2C C-terminal (IPR012328),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);Oryzabase=21561;TENOR=Os07t0525500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	20421324	20421500	.	-	0	Parent=Os07t0525500-00
Chr07	irgsp1_rep	CDS	20420138	20421136	.	-	0	Parent=Os07t0525500-00
Chr07	irgsp1_rep	mRNA	20455512	20456848	.	-	.	ID=Os07t0525900-00;Name=Os07t0525900-00;Locus_id=Os07g0525900;CGSNL Gene Symbol=PKS14;CGSNL Gene Name=POLYKETIDE SYNTHASE 14;Oryzabase Gene Symbol Synonym(s)=OsPKS14%2C OsCHS14%2C CHS14;Oryzabase Gene Name Synonym(s)=polyketide synthase 14%2C Chalcone synthase 14;Note=Similar to Chalcone synthase.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8L6D2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Chalcone/stilbene synthase%2C N-terminal (IPR001099),Polyketide synthase%2C type III (IPR011141),Chalcone/stilbene synthase%2C C-terminal (IPR012328),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);Oryzabase=21562;TENOR=Os07t0525900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	20456653	20456848	.	-	0	Parent=Os07t0525900-00
Chr07	irgsp1_rep	CDS	20455512	20456512	.	-	2	Parent=Os07t0525900-00
Chr07	irgsp1_rep	mRNA	20455542	20456498	.	+	.	ID=Os07t0526150-00;Name=Os07t0526150-00;Locus_id=Os07g0526150;Note=Hypothetical protein.;Transcript_evidence=EU966441 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0526150-00
Chr07	irgsp1_rep	five_prime_UTR	20455542	20455554	.	+	.	Parent=Os07t0526150-00
Chr07	irgsp1_rep	CDS	20455555	20456498	.	+	0	Parent=Os07t0526150-00
Chr07	irgsp1_rep	mRNA	20504692	20506402	.	-	.	ID=Os07t0526400-01;Name=Os07t0526400-01;Locus_id=Os07g0526400;CGSNL Gene Symbol=PKS15;CGSNL Gene Name=POLYKETIDE SYNTHASE 15;Oryzabase Gene Symbol Synonym(s)=OsPKS15%2C OsCHS15%2C CHS15;Oryzabase Gene Name Synonym(s)=polyketide synthase 15%2C Chalcone synthase 15;Note=Polyketide synthase%2C type III domain containing protein.;Transcript_evidence=AK241194 (DDBJ%2C Best hit);ORF_evidence=Q2R3A1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Chalcone/stilbene synthase%2C N-terminal (IPR001099),Polyketide synthase%2C type III (IPR011141),Chalcone/stilbene synthase%2C C-terminal (IPR012328),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);NIAS_FLcDNA=J065121D09;Oryzabase=21563;TENOR=Os07t0526400-01;KEGG=Os07t0526400-01
Chr07	irgsp1_rep	five_prime_UTR	20506309	20506402	.	-	.	Parent=Os07t0526400-01
Chr07	irgsp1_rep	CDS	20506107	20506308	.	-	0	Parent=Os07t0526400-01
Chr07	irgsp1_rep	CDS	20505024	20506021	.	-	2	Parent=Os07t0526400-01
Chr07	irgsp1_rep	three_prime_UTR	20504692	20505023	.	-	.	Parent=Os07t0526400-01
Chr07	irgsp1_rep	mRNA	20523736	20525356	.	+	.	ID=Os07t0526600-01;Name=Os07t0526600-01;Locus_id=Os07g0526600;Note=Alpha/beta hydrolase fold-3 domain containing protein.;Transcript_evidence=AK109058 (DDBJ%2C Best hit);ORF_evidence=A2YM13 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=002-154-E12;Expression=AK109058;TENOR=Os07t0526600-01;KEGG=Os07t0526600-01
Chr07	irgsp1_rep	five_prime_UTR	20523736	20523738	.	+	.	Parent=Os07t0526600-01
Chr07	irgsp1_rep	CDS	20523739	20525121	.	+	0	Parent=Os07t0526600-01
Chr07	irgsp1_rep	three_prime_UTR	20525122	20525356	.	+	.	Parent=Os07t0526600-01
Chr07	irgsp1_rep	mRNA	20535857	20536812	.	+	.	ID=Os07t0526700-01;Name=Os07t0526700-01;Locus_id=Os07g0526700;Note=Conserved hypothetical protein.;Transcript_evidence=AK069124 (DDBJ%2C Best hit);ORF_evidence=NP_001059243.1 (RefSeq);NIAS_FLcDNA=J023006M12;Expression=AK069124;TENOR=Os07t0526700-01;KEGG=Os07t0526700-01
Chr07	irgsp1_rep	five_prime_UTR	20535857	20536222	.	+	.	Parent=Os07t0526700-01
Chr07	irgsp1_rep	CDS	20536223	20536435	.	+	0	Parent=Os07t0526700-01
Chr07	irgsp1_rep	three_prime_UTR	20536436	20536812	.	+	.	Parent=Os07t0526700-01
Chr07	irgsp1_rep	mRNA	20562555	20567659	.	+	.	ID=Os07t0527000-00;Name=Os07t0527000-00;Locus_id=Os07g0527000;Note=Similar to nodulin-like protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001151548.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);TENOR=Os07t0527000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	20562555	20562733	.	+	0	Parent=Os07t0527000-00
Chr07	irgsp1_rep	CDS	20562809	20562871	.	+	1	Parent=Os07t0527000-00
Chr07	irgsp1_rep	CDS	20564980	20565096	.	+	1	Parent=Os07t0527000-00
Chr07	irgsp1_rep	CDS	20565311	20565566	.	+	1	Parent=Os07t0527000-00
Chr07	irgsp1_rep	CDS	20565762	20565905	.	+	0	Parent=Os07t0527000-00
Chr07	irgsp1_rep	CDS	20566043	20566104	.	+	0	Parent=Os07t0527000-00
Chr07	irgsp1_rep	CDS	20566322	20566478	.	+	1	Parent=Os07t0527000-00
Chr07	irgsp1_rep	CDS	20567519	20567659	.	+	0	Parent=Os07t0527000-00
Chr07	irgsp1_rep	mRNA	20586172	20588166	.	+	.	ID=Os07t0527300-00;Name=Os07t0527300-00;Locus_id=Os07g0527300;Note=Similar to nodulin-like protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001151548.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);TENOR=Os07t0527300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	20586172	20586216	.	+	0	Parent=Os07t0527300-00
Chr07	irgsp1_rep	CDS	20586304	20586459	.	+	0	Parent=Os07t0527300-00
Chr07	irgsp1_rep	CDS	20586569	20586720	.	+	0	Parent=Os07t0527300-00
Chr07	irgsp1_rep	CDS	20588055	20588166	.	+	1	Parent=Os07t0527300-00
Chr07	irgsp1_rep	mRNA	20616003	20617963	.	-	.	ID=Os07t0527750-00;Name=Os07t0527750-00;Locus_id=Os07g0527750;Note=Hypothetical gene.;Transcript_evidence=BT086866 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0527750-00
Chr07	irgsp1_rep	five_prime_UTR	20617960	20617963	.	-	.	Parent=Os07t0527750-00
Chr07	irgsp1_rep	CDS	20617855	20617959	.	-	0	Parent=Os07t0527750-00
Chr07	irgsp1_rep	CDS	20616003	20616489	.	-	0	Parent=Os07t0527750-00
Chr07	irgsp1_rep	mRNA	20615767	20616576	.	+	.	ID=Os07t0527800-00;Name=Os07t0527800-00;Locus_id=Os07g0527800;Note=Ankyrin repeat domain containing protein.;Transcript_evidence=BT065146 (DDBJ);ORF_evidence=NP_001059835.2 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);TENOR=Os07t0527800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	20615767	20616576	.	+	0	Parent=Os07t0527800-00
Chr07	irgsp1_rep	mRNA	20625092	20626195	.	-	.	ID=Os07t0527900-00;Name=Os07t0527900-00;Locus_id=Os07g0527900;Note=Conserved hypothetical protein.;Transcript_evidence=AK371748 (DDBJ);ORF_evidence=NP_001059836.1 (RefSeq);TENOR=Os07t0527900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	20625368	20626195	.	-	0	Parent=Os07t0527900-00
Chr07	irgsp1_rep	three_prime_UTR	20625241	20625367	.	-	.	Parent=Os07t0527900-00
Chr07	irgsp1_rep	three_prime_UTR	20625092	20625171	.	-	.	Parent=Os07t0527900-00
Chr07	irgsp1_rep	mRNA	20635022	20635228	.	+	.	ID=Os07t0528051-00;Name=Os07t0528051-00;Locus_id=Os07g0528051;Note=Non-protein coding transcript.;Transcript_evidence=AK287742 (DDBJ%2C Secondary hit);ORF_evidence=NONE;TENOR=Os07t0528051-00
Chr07	irgsp1_rep	exon	20635022	20635228	.	+	.	Parent=Os07t0528051-00
Chr07	irgsp1_rep	mRNA	20640488	20647709	.	+	.	ID=Os07t0528200-00;Name=Os07t0528200-00;Locus_id=Os07g0528200;Note=Conserved hypothetical protein.;Transcript_evidence=AK371748 (DDBJ);ORF_evidence=A2YM24 (UniProt);TENOR=Os07t0528200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	20640488	20640592	.	+	.	Parent=Os07t0528200-00
Chr07	irgsp1_rep	CDS	20640593	20640624	.	+	0	Parent=Os07t0528200-00
Chr07	irgsp1_rep	CDS	20641467	20641781	.	+	1	Parent=Os07t0528200-00
Chr07	irgsp1_rep	CDS	20646979	20647018	.	+	1	Parent=Os07t0528200-00
Chr07	irgsp1_rep	three_prime_UTR	20647019	20647709	.	+	.	Parent=Os07t0528200-00
Chr07	irgsp1_rep	mRNA	20652201	20654046	.	+	.	ID=Os07t0528400-00;Name=Os07t0528400-00;Locus_id=Os07g0528400;Note=Conserved hypothetical protein.;Transcript_evidence=AK371748 (DDBJ);ORF_evidence=Q6Z6N3 (UniProt);TENOR=Os07t0528400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	20652201	20652246	.	+	.	Parent=Os07t0528400-00
Chr07	irgsp1_rep	CDS	20652247	20652353	.	+	0	Parent=Os07t0528400-00
Chr07	irgsp1_rep	CDS	20653035	20654046	.	+	1	Parent=Os07t0528400-00
Chr07	irgsp1_rep	mRNA	20690398	20690967	.	+	.	ID=Os07t0528900-00;Name=Os07t0528900-00;Locus_id=Os07g0528900;Note=Similar to SYP132.;Transcript_evidence=BT041829 (DDBJ);ORF_evidence=XP_002871307.1 (RefSeq);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: membrane (GO:0016020),Molecular Function: SNAP receptor activity (GO:0005484),Molecular Function: protein binding (GO:0005515);InterPro=Target SNARE coiled-coil domain (IPR000727),Syntaxin/epimorphin%2C conserved site (IPR006012),t-SNARE (IPR010989);TENOR=Os07t0528900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	20690398	20690505	.	+	0	Parent=Os07t0528900-00
Chr07	irgsp1_rep	CDS	20690624	20690689	.	+	0	Parent=Os07t0528900-00
Chr07	irgsp1_rep	CDS	20690806	20690967	.	+	0	Parent=Os07t0528900-00
Chr07	irgsp1_rep	mRNA	20691213	20693521	.	-	.	ID=Os07t0529000-01;Name=Os07t0529000-01;Locus_id=Os07g0529000;CGSNL Gene Symbol=ICL;CGSNL Gene Name=ISOCITRATE LYASE;Oryzabase Gene Symbol Synonym(s)=OsEnS-107%2C EnS-107%2C OsI85%2C I85%2C OsICL%2C Osl85%2C l43%2C Osl43%2C OsL85;Oryzabase Gene Name Synonym(s)=isocitrate lyase%2C endosperm-specific gene 107;Note=Similar to Isocitrate lyase (Fragment).;Transcript_evidence=AK103744 (DDBJ%2C Best hit),AK063353 (DDBJ%2C Best hit);ORF_evidence=A1YZC8 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: carboxylic acid metabolic process (GO:0019752),Molecular Function: catalytic activity (GO:0003824),Molecular Function: isocitrate lyase activity (GO:0004451);InterPro=Isocitrate lyase/phosphorylmutase (IPR000918),Isocitrate lyase (IPR006254),Pyruvate/Phosphoenolpyruvate kinase (IPR015813),Isocitrate lyase/phosphorylmutase%2C conserved site (IPR018523);NIAS_FLcDNA=J033138N10,001-114-C03;Oryzabase=11215;Expression=AK103744;TENOR=Os07t0529000-01;KEGG=Os07t0529000-01 (EC:4.1.3.1)
Chr07	irgsp1_rep	five_prime_UTR	20693447	20693521	.	-	.	Parent=Os07t0529000-01
Chr07	irgsp1_rep	CDS	20693417	20693446	.	-	0	Parent=Os07t0529000-01
Chr07	irgsp1_rep	CDS	20691732	20693335	.	-	0	Parent=Os07t0529000-01
Chr07	irgsp1_rep	CDS	20691510	20691594	.	-	1	Parent=Os07t0529000-01
Chr07	irgsp1_rep	three_prime_UTR	20691213	20691509	.	-	.	Parent=Os07t0529000-01
Chr07	irgsp1_rep	mRNA	20724581	20726069	.	+	.	ID=Os07t0529600-01;Name=Os07t0529600-01;Locus_id=Os07g0529600;RAP-DB Gene Symbol Synonym(s)=OsDR8%2C OsXNP;RAP-DB Gene Name Synonym(s)=defense-responsive gene 8%2C XopN<sub>KXO85</sub> binding protein;CGSNL Gene Symbol=DR8;CGSNL Gene Name=PATHOGEN-INDUCED DEFENSE-RESPONSIVE PROTEIN 8;Oryzabase Gene Symbol Synonym(s)=OsDR8%2C OsXNP%2C FOXRED1;Oryzabase Gene Name Synonym(s)=pathogen-induced defense-responsive protein 8%2C defenseresponsive gene 8%2C XopNKXO85 binding protein%2C FAD dependent oxidoreductase 1%2C FAD dependent oxidoreductase domain containing protein 1%2C Defence-response protein 8;Note=Thiamine synthase%2C Thiamine accumulation%2C Bacterial blight resistance%2C Blast resistance;Transcript_evidence=AK099918;ORF_evidence=Q7XXS4;GO=Biological Process: thiamine biosynthetic process (GO:0009228);InterPro=FAD/NAD(P)-binding domain superfamily (IPR036188),Thiazole biosynthetic enzyme Thi4 family (IPR002922),Thiamine thiazole synthase (IPR027495);NIAS_FLcDNA=J013116J24;Manual Curation=July 21%2C 2020;Literature_PMID=24019919,16514565;Oryzabase=6121;Expression=AK099918;TENOR=Os07t0529600-01;KEGG=Os07t0529600-01;Subcellular location=cytoplasm (GO:0005737)
Chr07	irgsp1_rep	five_prime_UTR	20724581	20724636	.	+	.	Parent=Os07t0529600-01
Chr07	irgsp1_rep	CDS	20724637	20725530	.	+	0	Parent=Os07t0529600-01
Chr07	irgsp1_rep	CDS	20725609	20725782	.	+	0	Parent=Os07t0529600-01
Chr07	irgsp1_rep	three_prime_UTR	20725783	20726069	.	+	.	Parent=Os07t0529600-01
Chr07	irgsp1_rep	mRNA	20724581	20726069	.	+	.	ID=Os07t0529600-02;Name=Os07t0529600-02;Locus_id=Os07g0529600;CGSNL Gene Symbol=DR8;CGSNL Gene Name=PATHOGEN-INDUCED DEFENSE-RESPONSIVE PROTEIN 8;Oryzabase Gene Symbol Synonym(s)=OsDR8%2C OsXNP%2C FOXRED1;Oryzabase Gene Name Synonym(s)=pathogen-induced defense-responsive protein 8%2C defenseresponsive gene 8%2C XopNKXO85 binding protein%2C FAD dependent oxidoreductase 1%2C FAD dependent oxidoreductase domain containing protein 1%2C Defence-response protein 8;Note=Similar to Pathogen-induced defense-responsive protein 8.;Transcript_evidence=AK064916 (DDBJ%2C Best hit);ORF_evidence=Q20IJ5 (UniProt);GO=Biological Process: thiamine biosynthetic process (GO:0009228);InterPro=Thiamine biosynthesis Thi4 protein (IPR002922);NIAS_FLcDNA=J013000M17;Oryzabase=6121;Expression=AK064916;TENOR=Os07t0529600-02;KEGG=Os07t0529600-02
Chr07	irgsp1_rep	five_prime_UTR	20724581	20724636	.	+	.	Parent=Os07t0529600-02
Chr07	irgsp1_rep	CDS	20724637	20725566	.	+	0	Parent=Os07t0529600-02
Chr07	irgsp1_rep	three_prime_UTR	20725567	20726069	.	+	.	Parent=Os07t0529600-02
Chr07	irgsp1_rep	mRNA	20729432	20731215	.	+	.	ID=Os07t0529700-01;Name=Os07t0529700-01;Locus_id=Os07g0529700;CGSNL Gene Symbol=XTH1;CGSNL Gene Name=XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 1;Oryzabase Gene Symbol Synonym(s)=OsXTH1;Oryzabase Gene Name Synonym(s)=xyloglucan endotransglucosylase/hydrolase%2C xyloglucan endotransglucosylase 1%2C xyloglucan endo-transglycosylase-like protein 1;Note=Similar to Xyloglucan endotransglucosylase/hydrolase 1.;Transcript_evidence=AK073731 (DDBJ%2C Best hit);ORF_evidence=C0IRG0 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 16 (IPR000757),Concanavalin A-like lectin/glucanase (IPR008985),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320);NIAS_FLcDNA=J033064P12;Oryzabase=6489;Expression=AK073731;TENOR=Os07t0529700-01;KEGG=Os07t0529700-01 (EC:2.4.1.207)
Chr07	irgsp1_rep	five_prime_UTR	20729432	20729525	.	+	.	Parent=Os07t0529700-01
Chr07	irgsp1_rep	CDS	20729526	20729736	.	+	0	Parent=Os07t0529700-01
Chr07	irgsp1_rep	CDS	20729815	20729933	.	+	2	Parent=Os07t0529700-01
Chr07	irgsp1_rep	three_prime_UTR	20729934	20731215	.	+	.	Parent=Os07t0529700-01
Chr07	irgsp1_rep	mRNA	20729434	20730256	.	+	.	ID=Os07t0529700-02;Name=Os07t0529700-02;Locus_id=Os07g0529700;CGSNL Gene Symbol=XTH1;CGSNL Gene Name=XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 1;Oryzabase Gene Symbol Synonym(s)=OsXTH1;Oryzabase Gene Name Synonym(s)=xyloglucan endotransglucosylase/hydrolase%2C xyloglucan endotransglucosylase 1%2C xyloglucan endo-transglycosylase-like protein 1;Note=Similar to Xyloglucan endo-transglycosylase-like protein.;Transcript_evidence=AK111340 (DDBJ%2C Best hit);ORF_evidence=C0IRG0 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 16 (IPR000757),Glycoside hydrolase%2C family 16%2C active site (IPR008263),Beta-glucanase (IPR008264),Concanavalin A-like lectin/glucanase (IPR008985),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320);NIAS_FLcDNA=002-181-F07;Oryzabase=6489;Expression=AK111340;TENOR=Os07t0529700-02;KEGG=Os07t0529700-02
Chr07	irgsp1_rep	five_prime_UTR	20729434	20729525	.	+	.	Parent=Os07t0529700-02
Chr07	irgsp1_rep	CDS	20729526	20729736	.	+	0	Parent=Os07t0529700-02
Chr07	irgsp1_rep	CDS	20729815	20729915	.	+	2	Parent=Os07t0529700-02
Chr07	irgsp1_rep	CDS	20730007	20730213	.	+	0	Parent=Os07t0529700-02
Chr07	irgsp1_rep	three_prime_UTR	20730214	20730256	.	+	.	Parent=Os07t0529700-02
Chr07	irgsp1_rep	mRNA	20733236	20735266	.	-	.	ID=Os07t0529800-01;Name=Os07t0529800-01;Locus_id=Os07g0529800;Oryzabase Gene Symbol Synonym(s)=GOS2%2C OseIF1%2C OsGOS2%2C SUI1%2C PtfS;Oryzabase Gene Name Synonym(s)=translation initiation factor eIF1%2C protein translation factor SUI1;Note=Protein translation factor SUI1 homolog (GOS2 protein).;Transcript_evidence=AK120697 (DDBJ%2C Best hit);ORF_evidence=Q71R35 (UniProt);GO=Biological Process: translational initiation (GO:0006413),Molecular Function: translation initiation factor activity (GO:0003743);InterPro=Translation initiation factor SUI1 (IPR001950),Eukaryotic translation initiation factor SUI1 (IPR005874);NIAS_FLcDNA=J013170I05;Oryzabase=13711;Expression=AK120697;TENOR=Os07t0529800-01;KEGG=Os07t0529800-01
Chr07	irgsp1_rep	five_prime_UTR	20735131	20735266	.	-	.	Parent=Os07t0529800-01
Chr07	irgsp1_rep	five_prime_UTR	20734092	20734129	.	-	.	Parent=Os07t0529800-01
Chr07	irgsp1_rep	CDS	20734055	20734091	.	-	0	Parent=Os07t0529800-01
Chr07	irgsp1_rep	CDS	20733758	20733969	.	-	2	Parent=Os07t0529800-01
Chr07	irgsp1_rep	CDS	20733613	20733666	.	-	0	Parent=Os07t0529800-01
Chr07	irgsp1_rep	CDS	20733462	20733506	.	-	0	Parent=Os07t0529800-01
Chr07	irgsp1_rep	three_prime_UTR	20733236	20733461	.	-	.	Parent=Os07t0529800-01
Chr07	irgsp1_rep	mRNA	20739506	20749456	.	-	.	ID=Os07t0530100-01;Name=Os07t0530100-01;Locus_id=Os07g0530100;Note=Tyrosyl-DNA phosphodiesterase family protein.;Transcript_evidence=AK069279 (DDBJ%2C Best hit);ORF_evidence=NP_197021.2 (RefSeq);GO=Biological Process: DNA repair (GO:0006281),Cellular Component: nucleus (GO:0005634),Molecular Function: protein binding (GO:0005515),Molecular Function: phosphoric diester hydrolase activity (GO:0008081);InterPro=SMAD/FHA domain (IPR008984),Tyrosyl-DNA phosphodiesterase (IPR010347);NIAS_FLcDNA=J023010I17;Expression=AK069279;TENOR=Os07t0530100-01;KEGG=Os07t0530100-01 (EC:3.1.4.-)
Chr07	irgsp1_rep	five_prime_UTR	20749360	20749456	.	-	.	Parent=Os07t0530100-01
Chr07	irgsp1_rep	CDS	20749342	20749359	.	-	0	Parent=Os07t0530100-01
Chr07	irgsp1_rep	CDS	20748893	20749084	.	-	0	Parent=Os07t0530100-01
Chr07	irgsp1_rep	CDS	20748515	20748787	.	-	0	Parent=Os07t0530100-01
Chr07	irgsp1_rep	CDS	20747266	20747484	.	-	0	Parent=Os07t0530100-01
Chr07	irgsp1_rep	CDS	20746705	20746765	.	-	0	Parent=Os07t0530100-01
Chr07	irgsp1_rep	CDS	20745710	20745786	.	-	2	Parent=Os07t0530100-01
Chr07	irgsp1_rep	CDS	20745375	20745632	.	-	0	Parent=Os07t0530100-01
Chr07	irgsp1_rep	CDS	20744588	20744677	.	-	0	Parent=Os07t0530100-01
Chr07	irgsp1_rep	CDS	20743713	20743847	.	-	0	Parent=Os07t0530100-01
Chr07	irgsp1_rep	CDS	20743070	20743219	.	-	0	Parent=Os07t0530100-01
Chr07	irgsp1_rep	CDS	20742670	20742773	.	-	0	Parent=Os07t0530100-01
Chr07	irgsp1_rep	CDS	20740551	20740604	.	-	1	Parent=Os07t0530100-01
Chr07	irgsp1_rep	CDS	20740369	20740459	.	-	1	Parent=Os07t0530100-01
Chr07	irgsp1_rep	CDS	20740156	20740233	.	-	0	Parent=Os07t0530100-01
Chr07	irgsp1_rep	CDS	20739928	20740069	.	-	0	Parent=Os07t0530100-01
Chr07	irgsp1_rep	CDS	20739770	20739843	.	-	2	Parent=Os07t0530100-01
Chr07	irgsp1_rep	three_prime_UTR	20739506	20739769	.	-	.	Parent=Os07t0530100-01
Chr07	irgsp1_rep	mRNA	20749676	20751726	.	+	.	ID=Os07t0530300-01;Name=Os07t0530300-01;Locus_id=Os07g0530300;Note=Protein of unknown function DUF1715%2C eukaryotic family protein.;Transcript_evidence=AK109327 (DDBJ%2C Best hit);ORF_evidence=B6TYC1 (UniProt);InterPro=Essential protein Yae1%2C N-terminal (IPR019191);NIAS_FLcDNA=002-188-H10;Expression=AK109327;TENOR=Os07t0530300-01;KEGG=Os07t0530300-01
Chr07	irgsp1_rep	five_prime_UTR	20749676	20749974	.	+	.	Parent=Os07t0530300-01
Chr07	irgsp1_rep	five_prime_UTR	20750983	20751071	.	+	.	Parent=Os07t0530300-01
Chr07	irgsp1_rep	CDS	20751072	20751506	.	+	0	Parent=Os07t0530300-01
Chr07	irgsp1_rep	three_prime_UTR	20751507	20751726	.	+	.	Parent=Os07t0530300-01
Chr07	irgsp1_rep	mRNA	20752266	20754511	.	-	.	ID=Os07t0530400-01;Name=Os07t0530400-01;Locus_id=Os07g0530400;Oryzabase Gene Symbol Synonym(s)=Os_F0782;Note=Ribosomal protein S14%2C conserved site domain containing protein.;Transcript_evidence=AK107269 (DDBJ%2C Best hit);ORF_evidence=A2YM32 (UniProt);NIAS_FLcDNA=002-125-H09;Oryzabase=17502;Expression=AK107269;TENOR=Os07t0530400-01;KEGG=Os07t0530400-01
Chr07	irgsp1_rep	five_prime_UTR	20754399	20754511	.	-	.	Parent=Os07t0530400-01
Chr07	irgsp1_rep	CDS	20754394	20754398	.	-	0	Parent=Os07t0530400-01
Chr07	irgsp1_rep	CDS	20752357	20753608	.	-	1	Parent=Os07t0530400-01
Chr07	irgsp1_rep	three_prime_UTR	20752266	20752356	.	-	.	Parent=Os07t0530400-01
Chr07	irgsp1_rep	mRNA	20764778	20769109	.	+	.	ID=Os07t0530600-01;Name=Os07t0530600-01;Locus_id=Os07g0530600;Note=Protein of unknown function DUF299 family protein.;Transcript_evidence=AK120747 (DDBJ%2C Best hit);ORF_evidence=B6UCI2 (UniProt);GO=Cellular Component: chloroplast (GO:0009507),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772),Molecular Function: phosphotransferase activity%2C phosphate group as acceptor (GO:0016776);InterPro=Protein of unknown function DUF299%2C phosphotransferase%2C predicted (IPR005177),Pyruvate Pi dikinase regulator (IPR017409);NIAS_FLcDNA=J023004N22;Expression=AK120747;TENOR=Os07t0530600-01;KEGG=Os07t0530600-01
Chr07	irgsp1_rep	five_prime_UTR	20764778	20764891	.	+	.	Parent=Os07t0530600-01
Chr07	irgsp1_rep	CDS	20764892	20765485	.	+	0	Parent=Os07t0530600-01
Chr07	irgsp1_rep	CDS	20766803	20767439	.	+	0	Parent=Os07t0530600-01
Chr07	irgsp1_rep	CDS	20767525	20767621	.	+	2	Parent=Os07t0530600-01
Chr07	irgsp1_rep	CDS	20768779	20768866	.	+	1	Parent=Os07t0530600-01
Chr07	irgsp1_rep	three_prime_UTR	20768867	20769109	.	+	.	Parent=Os07t0530600-01
Chr07	irgsp1_rep	mRNA	20769109	20772250	.	-	.	ID=Os07t0530700-01;Name=Os07t0530700-01;Locus_id=Os07g0530700;Note=Conserved hypothetical protein.;Transcript_evidence=AK099533 (DDBJ%2C Best hit);ORF_evidence=B8B6X1 (UniProt);NIAS_FLcDNA=J013031M18;Expression=AK099533;TENOR=Os07t0530700-01;KEGG=Os07t0530700-01
Chr07	irgsp1_rep	five_prime_UTR	20772135	20772250	.	-	.	Parent=Os07t0530700-01
Chr07	irgsp1_rep	CDS	20772108	20772134	.	-	0	Parent=Os07t0530700-01
Chr07	irgsp1_rep	CDS	20771794	20771949	.	-	0	Parent=Os07t0530700-01
Chr07	irgsp1_rep	CDS	20771571	20771640	.	-	0	Parent=Os07t0530700-01
Chr07	irgsp1_rep	CDS	20771100	20771289	.	-	2	Parent=Os07t0530700-01
Chr07	irgsp1_rep	CDS	20769489	20769585	.	-	1	Parent=Os07t0530700-01
Chr07	irgsp1_rep	three_prime_UTR	20769109	20769488	.	-	.	Parent=Os07t0530700-01
Chr07	irgsp1_rep	mRNA	20769105	20771529	.	-	.	ID=Os07t0530700-02;Name=Os07t0530700-02;Locus_id=Os07g0530700;Note=Conserved hypothetical protein.;Transcript_evidence=AK060014 (DDBJ%2C Best hit);ORF_evidence=B8B6X1 (UniProt);NIAS_FLcDNA=006-302-F04;TENOR=Os07t0530700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	20771312	20771529	.	-	.	Parent=Os07t0530700-02
Chr07	irgsp1_rep	CDS	20771100	20771311	.	-	0	Parent=Os07t0530700-02
Chr07	irgsp1_rep	CDS	20769489	20769585	.	-	1	Parent=Os07t0530700-02
Chr07	irgsp1_rep	three_prime_UTR	20769105	20769488	.	-	.	Parent=Os07t0530700-02
Chr07	irgsp1_rep	mRNA	20779574	20780176	.	-	.	ID=Os07t0530850-00;Name=Os07t0530850-00;Locus_id=Os07g0530850;Note=Non-protein coding transcript.;Transcript_evidence=CT836063 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os07t0530850-00
Chr07	irgsp1_rep	exon	20779574	20780176	.	-	.	Parent=Os07t0530850-00
Chr07	irgsp1_rep	mRNA	20789837	20790707	.	-	.	ID=Os07t0531200-01;Name=Os07t0531200-01;Locus_id=Os07g0531200;Note=Conserved hypothetical protein.;Transcript_evidence=AK111249 (DDBJ%2C Best hit);ORF_evidence=A2YM37 (UniProt);NIAS_FLcDNA=002-180-D10;Expression=AK111249;TENOR=Os07t0531200-01;KEGG=Os07t0531200-01
Chr07	irgsp1_rep	five_prime_UTR	20790576	20790707	.	-	.	Parent=Os07t0531200-01
Chr07	irgsp1_rep	CDS	20790147	20790575	.	-	0	Parent=Os07t0531200-01
Chr07	irgsp1_rep	three_prime_UTR	20789837	20790146	.	-	.	Parent=Os07t0531200-01
Chr07	irgsp1_rep	mRNA	20803306	20805360	.	+	.	ID=Os07t0531400-01;Name=Os07t0531400-01;Locus_id=Os07g0531400;Oryzabase Gene Symbol Synonym(s)=prx104;Oryzabase Gene Name Synonym(s)=class III peroxidase 104;Note=Similar to Peroxidase 27 precursor (EC 1.11.1.7) (Atperox P27) (PRXR7) (ATP12a).;Transcript_evidence=AK103641 (DDBJ%2C Best hit);ORF_evidence=A2YM38 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J033134M02;Oryzabase=14626;Expression=AK103641;TENOR=Os07t0531400-01;KEGG=Os07t0531400-01 (EC:1.11.1.7)
Chr07	irgsp1_rep	five_prime_UTR	20803306	20803392	.	+	.	Parent=Os07t0531400-01
Chr07	irgsp1_rep	CDS	20803393	20803626	.	+	0	Parent=Os07t0531400-01
Chr07	irgsp1_rep	CDS	20803966	20804157	.	+	0	Parent=Os07t0531400-01
Chr07	irgsp1_rep	CDS	20804269	20804449	.	+	0	Parent=Os07t0531400-01
Chr07	irgsp1_rep	CDS	20804833	20805245	.	+	2	Parent=Os07t0531400-01
Chr07	irgsp1_rep	three_prime_UTR	20805246	20805360	.	+	.	Parent=Os07t0531400-01
Chr07	irgsp1_rep	mRNA	20803897	20805360	.	+	.	ID=Os07t0531400-02;Name=Os07t0531400-02;Locus_id=Os07g0531400;Oryzabase Gene Symbol Synonym(s)=prx104;Oryzabase Gene Name Synonym(s)=class III peroxidase 104;Note=Plant peroxidase domain containing protein.;Transcript_evidence=AK071111 (DDBJ%2C Best hit);ORF_evidence=A2YM38 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793);NIAS_FLcDNA=J023078B01;Oryzabase=14626;TENOR=Os07t0531400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	20803897	20804028	.	+	.	Parent=Os07t0531400-02
Chr07	irgsp1_rep	CDS	20804029	20804157	.	+	0	Parent=Os07t0531400-02
Chr07	irgsp1_rep	CDS	20804269	20804449	.	+	0	Parent=Os07t0531400-02
Chr07	irgsp1_rep	CDS	20804833	20805245	.	+	2	Parent=Os07t0531400-02
Chr07	irgsp1_rep	three_prime_UTR	20805246	20805360	.	+	.	Parent=Os07t0531400-02
Chr07	irgsp1_rep	mRNA	20806655	20807495	.	+	.	ID=Os07t0531500-01;Name=Os07t0531500-01;Locus_id=Os07g0531500;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK241202 (DDBJ%2C Best hit);ORF_evidence=NP_001151684.1 (RefSeq);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=J065122B10;TENOR=Os07t0531500-01;KEGG=Os07t0531500-01
Chr07	irgsp1_rep	five_prime_UTR	20806655	20806778	.	+	.	Parent=Os07t0531500-01
Chr07	irgsp1_rep	CDS	20806779	20807381	.	+	0	Parent=Os07t0531500-01
Chr07	irgsp1_rep	three_prime_UTR	20807382	20807495	.	+	.	Parent=Os07t0531500-01
Chr07	irgsp1_rep	mRNA	20808096	20812480	.	-	.	ID=Os07t0531600-01;Name=Os07t0531600-01;Locus_id=Os07g0531600;Note=Phospholipid/glycerol acyltransferase domain containing protein.;Transcript_evidence=AK067845 (DDBJ%2C Best hit);ORF_evidence=B6T8D4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Phospholipid/glycerol acyltransferase (IPR002123);NIAS_FLcDNA=J013124G01;Expression=AK067845;TENOR=Os07t0531600-01;KEGG=Os07t0531600-01
Chr07	irgsp1_rep	five_prime_UTR	20812437	20812480	.	-	.	Parent=Os07t0531600-01
Chr07	irgsp1_rep	CDS	20812330	20812436	.	-	0	Parent=Os07t0531600-01
Chr07	irgsp1_rep	CDS	20812138	20812195	.	-	1	Parent=Os07t0531600-01
Chr07	irgsp1_rep	CDS	20811150	20811268	.	-	0	Parent=Os07t0531600-01
Chr07	irgsp1_rep	CDS	20810608	20810704	.	-	1	Parent=Os07t0531600-01
Chr07	irgsp1_rep	CDS	20810376	20810471	.	-	0	Parent=Os07t0531600-01
Chr07	irgsp1_rep	CDS	20809937	20810033	.	-	0	Parent=Os07t0531600-01
Chr07	irgsp1_rep	CDS	20809760	20809847	.	-	2	Parent=Os07t0531600-01
Chr07	irgsp1_rep	CDS	20809592	20809688	.	-	1	Parent=Os07t0531600-01
Chr07	irgsp1_rep	CDS	20808896	20808981	.	-	0	Parent=Os07t0531600-01
Chr07	irgsp1_rep	CDS	20808686	20808805	.	-	1	Parent=Os07t0531600-01
Chr07	irgsp1_rep	CDS	20808509	20808607	.	-	1	Parent=Os07t0531600-01
Chr07	irgsp1_rep	CDS	20808352	20808400	.	-	1	Parent=Os07t0531600-01
Chr07	irgsp1_rep	three_prime_UTR	20808096	20808351	.	-	.	Parent=Os07t0531600-01
Chr07	irgsp1_rep	mRNA	20812882	20817921	.	+	.	ID=Os07t0531700-01;Name=Os07t0531700-01;Locus_id=Os07g0531700;Note=NUC153 domain containing protein.;Transcript_evidence=AK071504 (DDBJ%2C Best hit);ORF_evidence=A3BKL2 (UniProt);GO=Cellular Component: nucleus (GO:0005634);InterPro=NUC153 (IPR012580);NIAS_FLcDNA=J023094A01;Expression=AK071504;TENOR=Os07t0531700-01;KEGG=Os07t0531700-01
Chr07	irgsp1_rep	five_prime_UTR	20812882	20813033	.	+	.	Parent=Os07t0531700-01
Chr07	irgsp1_rep	CDS	20813034	20813393	.	+	0	Parent=Os07t0531700-01
Chr07	irgsp1_rep	CDS	20814171	20814287	.	+	0	Parent=Os07t0531700-01
Chr07	irgsp1_rep	CDS	20815001	20815275	.	+	0	Parent=Os07t0531700-01
Chr07	irgsp1_rep	CDS	20815485	20815647	.	+	1	Parent=Os07t0531700-01
Chr07	irgsp1_rep	CDS	20815872	20816000	.	+	0	Parent=Os07t0531700-01
Chr07	irgsp1_rep	CDS	20816568	20817292	.	+	0	Parent=Os07t0531700-01
Chr07	irgsp1_rep	CDS	20817432	20817660	.	+	1	Parent=Os07t0531700-01
Chr07	irgsp1_rep	three_prime_UTR	20817661	20817921	.	+	.	Parent=Os07t0531700-01
Chr07	irgsp1_rep	mRNA	20818263	20818612	.	-	.	ID=Os07t0531800-01;Name=Os07t0531800-01;Locus_id=Os07g0531800;Note=Non-protein coding transcript.;Transcript_evidence=AK058864 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-005-H10;TENOR=Os07t0531800-01
Chr07	irgsp1_rep	exon	20818263	20818612	.	-	.	Parent=Os07t0531800-01
Chr07	irgsp1_rep	mRNA	20818884	20822105	.	-	.	ID=Os07t0531900-00;Name=Os07t0531900-00;Locus_id=Os07g0531900;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8GVN4 (UniProt);TENOR=Os07t0531900-00;KEGG=Os07t0531900-00
Chr07	irgsp1_rep	CDS	20818884	20822105	.	-	0	Parent=Os07t0531900-00
Chr07	irgsp1_rep	mRNA	20874271	20876692	.	+	.	ID=Os07t0532500-01;Name=Os07t0532500-01;Locus_id=Os07g0532500;Note=Ankyrin repeat containing protein.;Transcript_evidence=AK068052 (DDBJ%2C Best hit);ORF_evidence=A3BKL8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J013131J24;Expression=AK068052;TENOR=Os07t0532500-01;KEGG=Os07t0532500-01
Chr07	irgsp1_rep	five_prime_UTR	20874271	20874374	.	+	.	Parent=Os07t0532500-01
Chr07	irgsp1_rep	CDS	20874375	20875074	.	+	0	Parent=Os07t0532500-01
Chr07	irgsp1_rep	CDS	20875148	20875725	.	+	2	Parent=Os07t0532500-01
Chr07	irgsp1_rep	three_prime_UTR	20875726	20876692	.	+	.	Parent=Os07t0532500-01
Chr07	irgsp1_rep	mRNA	20875695	20876723	.	+	.	ID=Os07t0532500-02;Name=Os07t0532500-02;Locus_id=Os07g0532500;Note=Hypothetical conserved gene.;Transcript_evidence=AK060168 (DDBJ%2C Best hit);ORF_evidence=A3BKL8 (UniProt);NIAS_FLcDNA=006-311-E06;Expression=AK060168;TENOR=Os07t0532500-02;KEGG=Os07t0532500-02
Chr07	irgsp1_rep	CDS	20875695	20876597	.	+	0	Parent=Os07t0532500-02
Chr07	irgsp1_rep	three_prime_UTR	20876598	20876723	.	+	.	Parent=Os07t0532500-02
Chr07	irgsp1_rep	mRNA	20879115	20881107	.	+	.	ID=Os07t0532600-01;Name=Os07t0532600-01;Locus_id=Os07g0532600;Note=Hypothetical conserved gene.;Transcript_evidence=AK058960 (DDBJ%2C Best hit);ORF_evidence=B9FTE0 (UniProt);NIAS_FLcDNA=001-020-B11;Expression=AK058960;TENOR=Os07t0532600-01;KEGG=Os07t0532600-01
Chr07	irgsp1_rep	five_prime_UTR	20879115	20879546	.	+	.	Parent=Os07t0532600-01
Chr07	irgsp1_rep	five_prime_UTR	20879927	20879950	.	+	.	Parent=Os07t0532600-01
Chr07	irgsp1_rep	CDS	20879951	20879966	.	+	0	Parent=Os07t0532600-01
Chr07	irgsp1_rep	CDS	20880281	20880435	.	+	2	Parent=Os07t0532600-01
Chr07	irgsp1_rep	CDS	20880860	20880898	.	+	0	Parent=Os07t0532600-01
Chr07	irgsp1_rep	three_prime_UTR	20880899	20881107	.	+	.	Parent=Os07t0532600-01
Chr07	irgsp1_rep	mRNA	20884650	20885960	.	+	.	ID=Os07t0532800-00;Name=Os07t0532800-00;Locus_id=Os07g0532800;Note=Peptidase A1 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001059856.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);TENOR=Os07t0532800-00;KEGG=Os07t0532800-00
Chr07	irgsp1_rep	CDS	20884650	20885960	.	+	0	Parent=Os07t0532800-00
Chr07	irgsp1_rep	mRNA	20884733	20885751	.	-	.	ID=Os07t0532866-00;Name=Os07t0532866-00;Locus_id=Os07g0532866;Note=Hypothetical protein.;Transcript_evidence=EU943155 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0532866-00
Chr07	irgsp1_rep	five_prime_UTR	20885751	20885751	.	-	.	Parent=Os07t0532866-00
Chr07	irgsp1_rep	CDS	20885094	20885750	.	-	0	Parent=Os07t0532866-00
Chr07	irgsp1_rep	three_prime_UTR	20884733	20885093	.	-	.	Parent=Os07t0532866-00
Chr07	irgsp1_rep	mRNA	20900389	20901471	.	+	.	ID=Os07t0532932-00;Name=Os07t0532932-00;Locus_id=Os07g0532932;Note=Hypothetical protein.;Transcript_evidence=AK360759 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0532932-00
Chr07	irgsp1_rep	CDS	20900389	20901471	.	+	0	Parent=Os07t0532932-00
Chr07	irgsp1_rep	mRNA	20900389	20901744	.	-	.	ID=Os07t0533000-00;Name=Os07t0533000-00;Locus_id=Os07g0533000;Note=Peptidase A1 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q69IP6 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);TENOR=Os07t0533000-00
Chr07	irgsp1_rep	CDS	20900389	20901744	.	-	0	Parent=Os07t0533000-00
Chr07	irgsp1_rep	mRNA	20905305	20905499	.	+	.	ID=Os07t0533201-00;Name=Os07t0533201-00;Locus_id=Os07g0533201;CGSNL Gene Symbol=WOX9;CGSNL Gene Name=WUSCHEL-LIKE HOMEOBOX 9;Oryzabase Gene Symbol Synonym(s)=OsWOX9%2C DWL1;Oryzabase Gene Name Synonym(s)=WUSCHEL-related homeobox 9%2C DWT-LIKE 1;Note=Similar to WUSCHEL-related homeobox 7.;Transcript_evidence=AM234752 (DDBJ%2C Secondary hit);ORF_evidence=Q0JKK6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);Oryzabase=14194;TENOR=Os07t0533201-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	20905305	20905499	.	+	0	Parent=Os07t0533201-00
Chr07	irgsp1_rep	mRNA	20919296	20920819	.	-	.	ID=Os07t0533300-00;Name=Os07t0533300-00;Locus_id=Os07g0533300;Note=Peptidase A1 domain containing protein.;Transcript_evidence=AK372022 (DDBJ);ORF_evidence=Q69IR6 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);TENOR=Os07t0533300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	20919365	20920819	.	-	0	Parent=Os07t0533300-00
Chr07	irgsp1_rep	three_prime_UTR	20919296	20919364	.	-	.	Parent=Os07t0533300-00
Chr07	irgsp1_rep	mRNA	20926852	20928381	.	-	.	ID=Os07t0533600-01;Name=Os07t0533600-01;Locus_id=Os07g0533600;Note=Peptidase aspartic%2C catalytic domain containing protein.;Transcript_evidence=AK109794 (DDBJ%2C Best hit);ORF_evidence=A2YM56 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=002-147-E01;Expression=AK109794;TENOR=Os07t0533600-01;KEGG=Os07t0533600-01
Chr07	irgsp1_rep	five_prime_UTR	20928325	20928381	.	-	.	Parent=Os07t0533600-01
Chr07	irgsp1_rep	CDS	20926999	20928324	.	-	0	Parent=Os07t0533600-01
Chr07	irgsp1_rep	three_prime_UTR	20926852	20926998	.	-	.	Parent=Os07t0533600-01
Chr07	irgsp1_rep	mRNA	20931661	20933256	.	-	.	ID=Os07t0533800-01;Name=Os07t0533800-01;Locus_id=Os07g0533800;Note=Peptidase A1 domain containing protein.;Transcript_evidence=AK064277 (DDBJ%2C Best hit);ORF_evidence=NP_001150925.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=002-105-F07;Expression=AK064277;TENOR=Os07t0533800-01;KEGG=Os07t0533800-01
Chr07	irgsp1_rep	five_prime_UTR	20933228	20933256	.	-	.	Parent=Os07t0533800-01
Chr07	irgsp1_rep	CDS	20931851	20933227	.	-	0	Parent=Os07t0533800-01
Chr07	irgsp1_rep	three_prime_UTR	20931661	20931850	.	-	.	Parent=Os07t0533800-01
Chr07	irgsp1_rep	mRNA	20931851	20933692	.	+	.	ID=Os07t0533850-00;Name=Os07t0533850-00;Locus_id=Os07g0533850;Note=Hypothetical conserved gene.;Transcript_evidence=EU943155 (DDBJ);ORF_evidence=longestORF;GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);TENOR=Os07t0533850-00;KEGG=Os07t0533850-00
Chr07	irgsp1_rep	CDS	20931851	20933200	.	+	0	Parent=Os07t0533850-00
Chr07	irgsp1_rep	three_prime_UTR	20933201	20933692	.	+	.	Parent=Os07t0533850-00
Chr07	irgsp1_rep	mRNA	20936021	20936647	.	-	.	ID=Os07t0533900-00;Name=Os07t0533900-00;Locus_id=Os07g0533900;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8H5I0 (UniProt);TENOR=Os07t0533900-00
Chr07	irgsp1_rep	CDS	20936021	20936647	.	-	0	Parent=Os07t0533900-00
Chr07	irgsp1_rep	mRNA	20936091	20941652	.	+	.	ID=Os07t0534000-01;Name=Os07t0534000-01;Locus_id=Os07g0534000;Note=Similar to permeases of the major facilitator superfamily.;Transcript_evidence=AK063551 (DDBJ%2C Best hit);ORF_evidence=NP_001149917.1 (RefSeq);NIAS_FLcDNA=001-117-E02;TENOR=Os07t0534000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	20936091	20936595	.	+	.	Parent=Os07t0534000-01
Chr07	irgsp1_rep	five_prime_UTR	20937876	20937903	.	+	.	Parent=Os07t0534000-01
Chr07	irgsp1_rep	CDS	20937904	20937990	.	+	0	Parent=Os07t0534000-01
Chr07	irgsp1_rep	CDS	20939204	20939294	.	+	0	Parent=Os07t0534000-01
Chr07	irgsp1_rep	CDS	20940048	20940116	.	+	2	Parent=Os07t0534000-01
Chr07	irgsp1_rep	CDS	20940721	20940854	.	+	2	Parent=Os07t0534000-01
Chr07	irgsp1_rep	three_prime_UTR	20940855	20941652	.	+	.	Parent=Os07t0534000-01
Chr07	irgsp1_rep	mRNA	20942978	20945787	.	+	.	ID=Os07t0534100-00;Name=Os07t0534100-00;Locus_id=Os07g0534100;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XIS9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Gnk2-homologous domain (IPR002902),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os07t0534100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	20942978	20943729	.	+	0	Parent=Os07t0534100-00
Chr07	irgsp1_rep	CDS	20944707	20944917	.	+	1	Parent=Os07t0534100-00
Chr07	irgsp1_rep	CDS	20944970	20945015	.	+	0	Parent=Os07t0534100-00
Chr07	irgsp1_rep	CDS	20945298	20945535	.	+	2	Parent=Os07t0534100-00
Chr07	irgsp1_rep	CDS	20945625	20945787	.	+	1	Parent=Os07t0534100-00
Chr07	irgsp1_rep	mRNA	20944302	20947879	.	-	.	ID=Os07t0534200-01;Name=Os07t0534200-01;Locus_id=Os07g0534200;Note=Hypothetical protein.;Transcript_evidence=AK064206 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-104-E05;Expression=AK064206;TENOR=Os07t0534200-01;KEGG=Os07t0534200-01
Chr07	irgsp1_rep	five_prime_UTR	20947815	20947879	.	-	.	Parent=Os07t0534200-01
Chr07	irgsp1_rep	CDS	20947347	20947814	.	-	0	Parent=Os07t0534200-01
Chr07	irgsp1_rep	three_prime_UTR	20946910	20947346	.	-	.	Parent=Os07t0534200-01
Chr07	irgsp1_rep	three_prime_UTR	20946679	20946822	.	-	.	Parent=Os07t0534200-01
Chr07	irgsp1_rep	three_prime_UTR	20946064	20946175	.	-	.	Parent=Os07t0534200-01
Chr07	irgsp1_rep	three_prime_UTR	20944302	20944611	.	-	.	Parent=Os07t0534200-01
Chr07	irgsp1_rep	mRNA	20947140	20950364	.	+	.	ID=Os07t0534300-01;Name=Os07t0534300-01;Locus_id=Os07g0534300;Note=Hypothetical conserved gene.;Transcript_evidence=AK241373 (DDBJ%2C Best hit);ORF_evidence=B9FXM9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Gnk2-homologous domain (IPR002902),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J065154P14;TENOR=Os07t0534300-01;KEGG=Os07t0534300-01
Chr07	irgsp1_rep	five_prime_UTR	20947140	20947140	.	+	.	Parent=Os07t0534300-01
Chr07	irgsp1_rep	CDS	20947141	20947786	.	+	0	Parent=Os07t0534300-01
Chr07	irgsp1_rep	CDS	20948299	20948430	.	+	2	Parent=Os07t0534300-01
Chr07	irgsp1_rep	CDS	20948550	20948731	.	+	2	Parent=Os07t0534300-01
Chr07	irgsp1_rep	CDS	20949006	20949219	.	+	0	Parent=Os07t0534300-01
Chr07	irgsp1_rep	CDS	20949307	20949544	.	+	2	Parent=Os07t0534300-01
Chr07	irgsp1_rep	CDS	20949738	20949891	.	+	1	Parent=Os07t0534300-01
Chr07	irgsp1_rep	CDS	20950001	20950276	.	+	0	Parent=Os07t0534300-01
Chr07	irgsp1_rep	three_prime_UTR	20950277	20950364	.	+	.	Parent=Os07t0534300-01
Chr07	irgsp1_rep	mRNA	20948669	20961649	.	-	.	ID=Os07t0534350-00;Name=Os07t0534350-00;Locus_id=Os07g0534350;Note=Hypothetical protein.;Transcript_evidence=FP096127 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0534350-00
Chr07	irgsp1_rep	five_prime_UTR	20961474	20961649	.	-	.	Parent=Os07t0534350-00
Chr07	irgsp1_rep	five_prime_UTR	20961277	20961330	.	-	.	Parent=Os07t0534350-00
Chr07	irgsp1_rep	CDS	20960977	20961276	.	-	0	Parent=Os07t0534350-00
Chr07	irgsp1_rep	three_prime_UTR	20960633	20960976	.	-	.	Parent=Os07t0534350-00
Chr07	irgsp1_rep	three_prime_UTR	20948669	20948742	.	-	.	Parent=Os07t0534350-00
Chr07	irgsp1_rep	mRNA	20958343	20962746	.	-	.	ID=Os07t0534400-01;Name=Os07t0534400-01;Locus_id=Os07g0534400;Note=Hypothetical protein.;Transcript_evidence=AK073625 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033051C01;Expression=AK073625;TENOR=Os07t0534400-01;KEGG=Os07t0534400-01
Chr07	irgsp1_rep	five_prime_UTR	20962597	20962746	.	-	.	Parent=Os07t0534400-01
Chr07	irgsp1_rep	five_prime_UTR	20958998	20959570	.	-	.	Parent=Os07t0534400-01
Chr07	irgsp1_rep	CDS	20958644	20958997	.	-	0	Parent=Os07t0534400-01
Chr07	irgsp1_rep	three_prime_UTR	20958343	20958643	.	-	.	Parent=Os07t0534400-01
Chr07	irgsp1_rep	mRNA	20958635	20962268	.	+	.	ID=Os07t0534500-01;Name=Os07t0534500-01;Locus_id=Os07g0534500;CGSNL Gene Symbol=RLCK233;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 233;Oryzabase Gene Symbol Synonym(s)=OsRLCK233;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 233;Note=Gnk2-homologous domain domain containing protein.;Transcript_evidence=AK072564 (DDBJ%2C Best hit);ORF_evidence=B8B6X9 (UniProt);InterPro=Gnk2-homologous domain (IPR002902);NIAS_FLcDNA=J023134B04;Oryzabase=18925;TENOR=Os07t0534500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	20958635	20958646	.	+	.	Parent=Os07t0534500-01
Chr07	irgsp1_rep	CDS	20958647	20959430	.	+	0	Parent=Os07t0534500-01
Chr07	irgsp1_rep	CDS	20959987	20960088	.	+	2	Parent=Os07t0534500-01
Chr07	irgsp1_rep	CDS	20960333	20960403	.	+	2	Parent=Os07t0534500-01
Chr07	irgsp1_rep	three_prime_UTR	20960404	20960404	.	+	.	Parent=Os07t0534500-01
Chr07	irgsp1_rep	three_prime_UTR	20960696	20960909	.	+	.	Parent=Os07t0534500-01
Chr07	irgsp1_rep	three_prime_UTR	20960995	20961232	.	+	.	Parent=Os07t0534500-01
Chr07	irgsp1_rep	three_prime_UTR	20961484	20961637	.	+	.	Parent=Os07t0534500-01
Chr07	irgsp1_rep	three_prime_UTR	20961769	20962268	.	+	.	Parent=Os07t0534500-01
Chr07	irgsp1_rep	mRNA	20969976	20970886	.	-	.	ID=Os07t0534600-00;Name=Os07t0534600-00;Locus_id=Os07g0534600;Note=Hypothetical protein.;Transcript_evidence=EU959795 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0534600-00
Chr07	irgsp1_rep	CDS	20970050	20970886	.	-	0	Parent=Os07t0534600-00
Chr07	irgsp1_rep	three_prime_UTR	20969976	20970049	.	-	.	Parent=Os07t0534600-00
Chr07	irgsp1_rep	mRNA	20970019	20975946	.	+	.	ID=Os07t0534700-01;Name=Os07t0534700-01;Locus_id=Os07g0534700;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK060565 (DDBJ%2C Best hit);ORF_evidence=B8B6Y0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Gnk2-homologous domain (IPR002902),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=001-022-H08;Expression=AK060565;TENOR=Os07t0534700-01;KEGG=Os07t0534700-01
Chr07	irgsp1_rep	five_prime_UTR	20970019	20970094	.	+	.	Parent=Os07t0534700-01
Chr07	irgsp1_rep	CDS	20970095	20970923	.	+	0	Parent=Os07t0534700-01
Chr07	irgsp1_rep	CDS	20973951	20974061	.	+	2	Parent=Os07t0534700-01
Chr07	irgsp1_rep	CDS	20974167	20974342	.	+	2	Parent=Os07t0534700-01
Chr07	irgsp1_rep	CDS	20974480	20974690	.	+	0	Parent=Os07t0534700-01
Chr07	irgsp1_rep	CDS	20974819	20975056	.	+	2	Parent=Os07t0534700-01
Chr07	irgsp1_rep	CDS	20975192	20975342	.	+	1	Parent=Os07t0534700-01
Chr07	irgsp1_rep	CDS	20975457	20975765	.	+	0	Parent=Os07t0534700-01
Chr07	irgsp1_rep	three_prime_UTR	20975766	20975946	.	+	.	Parent=Os07t0534700-01
Chr07	irgsp1_rep	mRNA	20999329	21001148	.	+	.	ID=Os07t0535100-01;Name=Os07t0535100-01;Locus_id=Os07g0535100;Oryzabase Gene Symbol Synonym(s)=OsFbox375%2C Os_F0062;Oryzabase Gene Name Synonym(s)=F-box protein 375;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK100978 (DDBJ%2C Best hit);ORF_evidence=B9FXN2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023144E12;Oryzabase=17150;Expression=AK100978;TENOR=Os07t0535100-01;KEGG=Os07t0535100-01
Chr07	irgsp1_rep	five_prime_UTR	20999329	20999562	.	+	.	Parent=Os07t0535100-01
Chr07	irgsp1_rep	five_prime_UTR	20999750	20999779	.	+	.	Parent=Os07t0535100-01
Chr07	irgsp1_rep	CDS	20999780	21000913	.	+	0	Parent=Os07t0535100-01
Chr07	irgsp1_rep	three_prime_UTR	21000914	21001148	.	+	.	Parent=Os07t0535100-01
Chr07	irgsp1_rep	mRNA	21002829	21004717	.	+	.	ID=Os07t0535200-01;Name=Os07t0535200-01;Locus_id=Os07g0535200;Oryzabase Gene Symbol Synonym(s)=OsFbox376%2C Os_F0063;Oryzabase Gene Name Synonym(s)=F-box protein 376;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK101804 (DDBJ%2C Best hit),AK063926 (DDBJ%2C Best hit);ORF_evidence=B9FXN3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033066K01,001-123-C06;Oryzabase=17151;Expression=AK101804;TENOR=Os07t0535200-01;KEGG=Os07t0535200-01
Chr07	irgsp1_rep	five_prime_UTR	21002829	21003024	.	+	.	Parent=Os07t0535200-01
Chr07	irgsp1_rep	five_prime_UTR	21003207	21003236	.	+	.	Parent=Os07t0535200-01
Chr07	irgsp1_rep	CDS	21003237	21004370	.	+	0	Parent=Os07t0535200-01
Chr07	irgsp1_rep	three_prime_UTR	21004371	21004717	.	+	.	Parent=Os07t0535200-01
Chr07	irgsp1_rep	mRNA	21029521	21030450	.	+	.	ID=Os07t0535600-00;Name=Os07t0535600-00;Locus_id=Os07g0535600;Note=F-box associated interaction domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XIS2 (UniProt);InterPro=F-box associated interaction domain (IPR017451);TENOR=Os07t0535600-00
Chr07	irgsp1_rep	CDS	21029521	21030450	.	+	0	Parent=Os07t0535600-00
Chr07	irgsp1_rep	mRNA	21042015	21043392	.	+	.	ID=Os07t0535700-01;Name=Os07t0535700-01;Locus_id=Os07g0535700;Note=F-box associated type 1 domain containing protein.;Transcript_evidence=AK063410 (DDBJ%2C Best hit);ORF_evidence=B9FXN4 (UniProt);InterPro=F-box associated interaction domain (IPR017451);NIAS_FLcDNA=001-115-B02;Oryzabase=17453;Expression=AK063410;TENOR=Os07t0535700-01;KEGG=Os07t0535700-01
Chr07	irgsp1_rep	five_prime_UTR	21042015	21042015	.	+	.	Parent=Os07t0535700-01
Chr07	irgsp1_rep	CDS	21042016	21043023	.	+	0	Parent=Os07t0535700-01
Chr07	irgsp1_rep	three_prime_UTR	21043024	21043392	.	+	.	Parent=Os07t0535700-01
Chr07	irgsp1_rep	mRNA	21045118	21049397	.	+	.	ID=Os07t0535800-01;Name=Os07t0535800-01;Locus_id=Os07g0535800;Note=Similar to SRK15 protein (Fragment).;Transcript_evidence=AK110461 (DDBJ%2C Best hit);ORF_evidence=B9FXN5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Gnk2-homologous domain (IPR002902),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=002-166-F11;Expression=AK110461;TENOR=Os07t0535800-01;KEGG=Os07t0535800-01
Chr07	irgsp1_rep	five_prime_UTR	21045118	21045218	.	+	.	Parent=Os07t0535800-01
Chr07	irgsp1_rep	CDS	21045219	21046050	.	+	0	Parent=Os07t0535800-01
Chr07	irgsp1_rep	CDS	21046887	21046997	.	+	2	Parent=Os07t0535800-01
Chr07	irgsp1_rep	CDS	21047121	21047313	.	+	2	Parent=Os07t0535800-01
Chr07	irgsp1_rep	CDS	21047521	21047732	.	+	1	Parent=Os07t0535800-01
Chr07	irgsp1_rep	CDS	21048385	21048622	.	+	2	Parent=Os07t0535800-01
Chr07	irgsp1_rep	CDS	21049086	21049293	.	+	1	Parent=Os07t0535800-01
Chr07	irgsp1_rep	three_prime_UTR	21049294	21049397	.	+	.	Parent=Os07t0535800-01
Chr07	irgsp1_rep	mRNA	21045943	21047572	.	-	.	ID=Os07t0536101-01;Name=Os07t0536101-01;Locus_id=Os07g0536101;Note=Non-protein coding transcript.;Transcript_evidence=AK288715 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090062E01;TENOR=Os07t0536101-01
Chr07	irgsp1_rep	exon	21045943	21047572	.	-	.	Parent=Os07t0536101-01
Chr07	irgsp1_rep	mRNA	21054353	21073720	.	+	.	ID=Os07t0536300-00;Name=Os07t0536300-00;Locus_id=Os07g0536300;Note=Gnk2-homologous domain domain containing protein.;Transcript_evidence=tplb0062a17 (Wheat FLcDNA);ORF_evidence=Q84SI3 (UniProt);InterPro=Gnk2-homologous domain (IPR002902);TENOR=Os07t0536300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	21054353	21054692	.	+	0	Parent=Os07t0536300-00
Chr07	irgsp1_rep	CDS	21073368	21073720	.	+	2	Parent=Os07t0536300-00
Chr07	irgsp1_rep	mRNA	21074652	21075682	.	+	.	ID=Os07t0536400-00;Name=Os07t0536400-00;Locus_id=Os07g0536400;Note=Conserved hypothetical protein.;Transcript_evidence=AK109581 (DDBJ%2C Secondary hit);ORF_evidence=Q2RAP5 (UniProt);TENOR=Os07t0536400-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	21074652	21074977	.	+	.	Parent=Os07t0536400-00
Chr07	irgsp1_rep	five_prime_UTR	21075012	21075326	.	+	.	Parent=Os07t0536400-00
Chr07	irgsp1_rep	CDS	21075327	21075512	.	+	0	Parent=Os07t0536400-00
Chr07	irgsp1_rep	three_prime_UTR	21075513	21075682	.	+	.	Parent=Os07t0536400-00
Chr07	irgsp1_rep	mRNA	21086087	21088595	.	-	.	ID=Os07t0536800-00;Name=Os07t0536800-00;Locus_id=Os07g0536800;Note=Hypothetical conserved gene.;Transcript_evidence=AK109751 (DDBJ%2C Secondary hit);ORF_evidence=Q53NH3 (UniProt);Expression=AK109751;TENOR=Os07t0536800-00;KEGG=Os07t0536800-00
Chr07	irgsp1_rep	five_prime_UTR	21088591	21088595	.	-	.	Parent=Os07t0536800-00
Chr07	irgsp1_rep	CDS	21087700	21088590	.	-	0	Parent=Os07t0536800-00
Chr07	irgsp1_rep	three_prime_UTR	21087405	21087699	.	-	.	Parent=Os07t0536800-00
Chr07	irgsp1_rep	three_prime_UTR	21086087	21086730	.	-	.	Parent=Os07t0536800-00
Chr07	irgsp1_rep	mRNA	21104462	21105276	.	-	.	ID=Os07t0536966-00;Name=Os07t0536966-00;Locus_id=Os07g0536966;Note=Hypothetical protein.;Transcript_evidence=EU959795 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0536966-00
Chr07	irgsp1_rep	five_prime_UTR	21105276	21105276	.	-	.	Parent=Os07t0536966-00
Chr07	irgsp1_rep	CDS	21104595	21105275	.	-	0	Parent=Os07t0536966-00
Chr07	irgsp1_rep	three_prime_UTR	21104462	21104594	.	-	.	Parent=Os07t0536966-00
Chr07	irgsp1_rep	mRNA	21104509	21109991	.	+	.	ID=Os07t0537000-01;Name=Os07t0537000-01;Locus_id=Os07g0537000;Note=Similar to Receptor protein kinase.;Transcript_evidence=AK100849 (DDBJ%2C Best hit);ORF_evidence=XP_002462969.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Gnk2-homologous domain (IPR002902),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023123I07;Oryzabase=20219;Expression=AK100849;TENOR=Os07t0537000-01;KEGG=Os07t0537000-01
Chr07	irgsp1_rep	five_prime_UTR	21104509	21104519	.	+	.	Parent=Os07t0537000-01
Chr07	irgsp1_rep	CDS	21104520	21105390	.	+	0	Parent=Os07t0537000-01
Chr07	irgsp1_rep	CDS	21108008	21108133	.	+	2	Parent=Os07t0537000-01
Chr07	irgsp1_rep	CDS	21108306	21108436	.	+	2	Parent=Os07t0537000-01
Chr07	irgsp1_rep	CDS	21108518	21108728	.	+	0	Parent=Os07t0537000-01
Chr07	irgsp1_rep	CDS	21108816	21109053	.	+	2	Parent=Os07t0537000-01
Chr07	irgsp1_rep	CDS	21109136	21109286	.	+	1	Parent=Os07t0537000-01
Chr07	irgsp1_rep	CDS	21109389	21109673	.	+	0	Parent=Os07t0537000-01
Chr07	irgsp1_rep	three_prime_UTR	21109674	21109726	.	+	.	Parent=Os07t0537000-01
Chr07	irgsp1_rep	three_prime_UTR	21109791	21109991	.	+	.	Parent=Os07t0537000-01
Chr07	irgsp1_rep	mRNA	21108967	21109959	.	+	.	ID=Os07t0537000-02;Name=Os07t0537000-02;Locus_id=Os07g0537000;Note=Similar to receptor-like serine-threonine protein kinase.;Transcript_evidence=AK111109 (DDBJ%2C Best hit);ORF_evidence=NP_001147287.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=002-176-A05;Oryzabase=20219;Expression=AK111109;TENOR=Os07t0537000-02;KEGG=Os07t0537000-02 (EC:2.7.11.1)
Chr07	irgsp1_rep	five_prime_UTR	21108967	21108967	.	+	.	Parent=Os07t0537000-02
Chr07	irgsp1_rep	CDS	21108968	21109053	.	+	0	Parent=Os07t0537000-02
Chr07	irgsp1_rep	CDS	21109136	21109286	.	+	1	Parent=Os07t0537000-02
Chr07	irgsp1_rep	CDS	21109389	21109673	.	+	0	Parent=Os07t0537000-02
Chr07	irgsp1_rep	three_prime_UTR	21109674	21109809	.	+	.	Parent=Os07t0537000-02
Chr07	irgsp1_rep	three_prime_UTR	21109847	21109959	.	+	.	Parent=Os07t0537000-02
Chr07	irgsp1_rep	mRNA	21116379	21117754	.	+	.	ID=Os07t0537200-01;Name=Os07t0537200-01;Locus_id=Os07g0537200;CGSNL Gene Symbol=RLCK234;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 234;Oryzabase Gene Symbol Synonym(s)=OsRLCK234;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 234;Note=Protein of unknown function DUF26 domain containing protein.;Transcript_evidence=AK240780 (DDBJ%2C Best hit);ORF_evidence=NP_001147287.1 (RefSeq);InterPro=Gnk2-homologous domain (IPR002902);NIAS_FLcDNA=J053075H13;Oryzabase=18926;TENOR=Os07t0537200-01;KEGG=Os07t0537200-01
Chr07	irgsp1_rep	five_prime_UTR	21116379	21116380	.	+	.	Parent=Os07t0537200-01
Chr07	irgsp1_rep	CDS	21116381	21117256	.	+	0	Parent=Os07t0537200-01
Chr07	irgsp1_rep	three_prime_UTR	21117257	21117754	.	+	.	Parent=Os07t0537200-01
Chr07	irgsp1_rep	mRNA	21121293	21125258	.	-	.	ID=Os07t0537250-01;Name=Os07t0537250-01;Locus_id=Os07g0537250;Note=Hypothetical gene.;Transcript_evidence=AK240738 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J043034B12;TENOR=Os07t0537250-01
Chr07	irgsp1_rep	five_prime_UTR	21124619	21125258	.	-	.	Parent=Os07t0537250-01
Chr07	irgsp1_rep	five_prime_UTR	21124366	21124516	.	-	.	Parent=Os07t0537250-01
Chr07	irgsp1_rep	five_prime_UTR	21124051	21124288	.	-	.	Parent=Os07t0537250-01
Chr07	irgsp1_rep	five_prime_UTR	21123761	21123971	.	-	.	Parent=Os07t0537250-01
Chr07	irgsp1_rep	five_prime_UTR	21123546	21123679	.	-	.	Parent=Os07t0537250-01
Chr07	irgsp1_rep	five_prime_UTR	21123257	21123391	.	-	.	Parent=Os07t0537250-01
Chr07	irgsp1_rep	five_prime_UTR	21121541	21122148	.	-	.	Parent=Os07t0537250-01
Chr07	irgsp1_rep	CDS	21121293	21121540	.	-	0	Parent=Os07t0537250-01
Chr07	irgsp1_rep	mRNA	21121304	21122602	.	+	.	ID=Os07t0537300-00;Name=Os07t0537300-00;Locus_id=Os07g0537300;Oryzabase Gene Symbol Synonym(s)=AGP%2C OsAGP;Oryzabase Gene Name Synonym(s)=Arabinogalactan protein;Note=Similar to receptor-like serine-threonine protein kinase.;Transcript_evidence=CT836117 (DDBJ%2C Best hit);ORF_evidence=NP_001147287.1 (RefSeq);InterPro=Gnk2-homologous domain (IPR002902);Oryzabase=23025;TENOR=Os07t0537300-00;KEGG=Os07t0537300-00
Chr07	irgsp1_rep	five_prime_UTR	21121304	21121325	.	+	.	Parent=Os07t0537300-00
Chr07	irgsp1_rep	CDS	21121326	21122073	.	+	0	Parent=Os07t0537300-00
Chr07	irgsp1_rep	CDS	21122083	21122201	.	+	2	Parent=Os07t0537300-00
Chr07	irgsp1_rep	three_prime_UTR	21122202	21122602	.	+	.	Parent=Os07t0537300-00
Chr07	irgsp1_rep	mRNA	21131097	21132528	.	+	.	ID=Os07t0537400-01;Name=Os07t0537400-01;Locus_id=Os07g0537400;Note=Similar to receptor-like serine-threonine protein kinase.;Transcript_evidence=AK240947 (DDBJ%2C Best hit);ORF_evidence=NP_001147287.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J065043C16;TENOR=Os07t0537400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	21131097	21131143	.	+	.	Parent=Os07t0537400-01
Chr07	irgsp1_rep	CDS	21131144	21131434	.	+	0	Parent=Os07t0537400-01
Chr07	irgsp1_rep	three_prime_UTR	21131435	21131849	.	+	.	Parent=Os07t0537400-01
Chr07	irgsp1_rep	three_prime_UTR	21131925	21132073	.	+	.	Parent=Os07t0537400-01
Chr07	irgsp1_rep	three_prime_UTR	21132172	21132528	.	+	.	Parent=Os07t0537400-01
Chr07	irgsp1_rep	mRNA	21133305	21140628	.	-	.	ID=Os07t0537500-01;Name=Os07t0537500-01;Locus_id=Os07g0537500;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK111734 (DDBJ%2C Best hit);ORF_evidence=NP_001149752.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Gnk2-homologous domain (IPR002902),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023041L05;Expression=AK111734;TENOR=Os07t0537500-01;KEGG=Os07t0537500-01
Chr07	irgsp1_rep	five_prime_UTR	21140616	21140628	.	-	.	Parent=Os07t0537500-01
Chr07	irgsp1_rep	CDS	21139787	21140615	.	-	0	Parent=Os07t0537500-01
Chr07	irgsp1_rep	CDS	21134979	21135116	.	-	2	Parent=Os07t0537500-01
Chr07	irgsp1_rep	CDS	21134760	21134899	.	-	2	Parent=Os07t0537500-01
Chr07	irgsp1_rep	CDS	21134467	21134677	.	-	0	Parent=Os07t0537500-01
Chr07	irgsp1_rep	CDS	21134110	21134347	.	-	2	Parent=Os07t0537500-01
Chr07	irgsp1_rep	CDS	21133858	21134008	.	-	1	Parent=Os07t0537500-01
Chr07	irgsp1_rep	CDS	21133547	21133764	.	-	0	Parent=Os07t0537500-01
Chr07	irgsp1_rep	CDS	21133459	21133513	.	-	1	Parent=Os07t0537500-01
Chr07	irgsp1_rep	three_prime_UTR	21133305	21133458	.	-	.	Parent=Os07t0537500-01
Chr07	irgsp1_rep	mRNA	21139748	21140912	.	+	.	ID=Os07t0537550-00;Name=Os07t0537550-00;Locus_id=Os07g0537550;Note=Hypothetical gene.;Transcript_evidence=CT834520 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os07t0537550-00;KEGG=Os07t0537550-00
Chr07	irgsp1_rep	five_prime_UTR	21139748	21139850	.	+	.	Parent=Os07t0537550-00
Chr07	irgsp1_rep	CDS	21139851	21140627	.	+	0	Parent=Os07t0537550-00
Chr07	irgsp1_rep	three_prime_UTR	21140628	21140711	.	+	.	Parent=Os07t0537550-00
Chr07	irgsp1_rep	three_prime_UTR	21140718	21140912	.	+	.	Parent=Os07t0537550-00
Chr07	irgsp1_rep	mRNA	21140941	21144246	.	+	.	ID=Os07t0537600-01;Name=Os07t0537600-01;Locus_id=Os07g0537600;Note=Hypothetical conserved gene.;Transcript_evidence=AK240943 (DDBJ%2C Best hit);ORF_evidence=Q84SG8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Gnk2-homologous domain (IPR002902),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J065042G13;TENOR=Os07t0537600-01;KEGG=Os07t0537600-01
Chr07	irgsp1_rep	five_prime_UTR	21140941	21141020	.	+	.	Parent=Os07t0537600-01
Chr07	irgsp1_rep	CDS	21141021	21141861	.	+	0	Parent=Os07t0537600-01
Chr07	irgsp1_rep	CDS	21141981	21142103	.	+	2	Parent=Os07t0537600-01
Chr07	irgsp1_rep	CDS	21142202	21142323	.	+	2	Parent=Os07t0537600-01
Chr07	irgsp1_rep	CDS	21142396	21142606	.	+	0	Parent=Os07t0537600-01
Chr07	irgsp1_rep	CDS	21143009	21143249	.	+	2	Parent=Os07t0537600-01
Chr07	irgsp1_rep	CDS	21143325	21143478	.	+	1	Parent=Os07t0537600-01
Chr07	irgsp1_rep	CDS	21143758	21144099	.	+	0	Parent=Os07t0537600-01
Chr07	irgsp1_rep	three_prime_UTR	21144100	21144246	.	+	.	Parent=Os07t0537600-01
Chr07	irgsp1_rep	mRNA	21144789	21145980	.	-	.	ID=Os07t0537701-01;Name=Os07t0537701-01;Locus_id=Os07g0537701;Note=Conserved hypothetical protein.;Transcript_evidence=AK241602 (DDBJ%2C Best hit);ORF_evidence=NP_001175236.1 (RefSeq);NIAS_FLcDNA=J065183L02;TENOR=Os07t0537701-01;KEGG=Os07t0537701-01
Chr07	irgsp1_rep	five_prime_UTR	21145784	21145980	.	-	.	Parent=Os07t0537701-01
Chr07	irgsp1_rep	CDS	21145346	21145783	.	-	0	Parent=Os07t0537701-01
Chr07	irgsp1_rep	three_prime_UTR	21144789	21145345	.	-	.	Parent=Os07t0537701-01
Chr07	irgsp1_rep	mRNA	21146543	21149741	.	+	.	ID=Os07t0537900-01;Name=Os07t0537900-01;Locus_id=Os07g0537900;Note=Similar to SRK3 gene.;Transcript_evidence=AK103108 (DDBJ%2C Best hit);ORF_evidence=A2YM80 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Gnk2-homologous domain (IPR002902),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033118P18;Expression=AK103108;TENOR=Os07t0537900-01;KEGG=Os07t0537900-01
Chr07	irgsp1_rep	five_prime_UTR	21146543	21146602	.	+	.	Parent=Os07t0537900-01
Chr07	irgsp1_rep	CDS	21146603	21147033	.	+	0	Parent=Os07t0537900-01
Chr07	irgsp1_rep	CDS	21147119	21147543	.	+	1	Parent=Os07t0537900-01
Chr07	irgsp1_rep	CDS	21147655	21147780	.	+	2	Parent=Os07t0537900-01
Chr07	irgsp1_rep	CDS	21147856	21147977	.	+	2	Parent=Os07t0537900-01
Chr07	irgsp1_rep	CDS	21148075	21148285	.	+	0	Parent=Os07t0537900-01
Chr07	irgsp1_rep	CDS	21148617	21148854	.	+	2	Parent=Os07t0537900-01
Chr07	irgsp1_rep	CDS	21148930	21149077	.	+	1	Parent=Os07t0537900-01
Chr07	irgsp1_rep	CDS	21149219	21149554	.	+	0	Parent=Os07t0537900-01
Chr07	irgsp1_rep	three_prime_UTR	21149555	21149741	.	+	.	Parent=Os07t0537900-01
Chr07	irgsp1_rep	mRNA	21146569	21148941	.	+	.	ID=Os07t0537900-02;Name=Os07t0537900-02;Locus_id=Os07g0537900;Note=Hypothetical conserved gene.;Transcript_evidence=AK106627 (DDBJ%2C Best hit);ORF_evidence=Q7F1L4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Gnk2-homologous domain (IPR002902),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-113-C09;Expression=AK106627;TENOR=Os07t0537900-02;KEGG=Os07t0537900-02
Chr07	irgsp1_rep	five_prime_UTR	21146569	21146602	.	+	.	Parent=Os07t0537900-02
Chr07	irgsp1_rep	CDS	21146603	21147033	.	+	0	Parent=Os07t0537900-02
Chr07	irgsp1_rep	CDS	21147119	21147543	.	+	1	Parent=Os07t0537900-02
Chr07	irgsp1_rep	CDS	21147655	21147780	.	+	2	Parent=Os07t0537900-02
Chr07	irgsp1_rep	CDS	21147856	21147977	.	+	2	Parent=Os07t0537900-02
Chr07	irgsp1_rep	CDS	21148075	21148285	.	+	0	Parent=Os07t0537900-02
Chr07	irgsp1_rep	CDS	21148617	21148858	.	+	2	Parent=Os07t0537900-02
Chr07	irgsp1_rep	three_prime_UTR	21148859	21148941	.	+	.	Parent=Os07t0537900-02
Chr07	irgsp1_rep	mRNA	21150017	21152324	.	-	.	ID=Os07t0538000-01;Name=Os07t0538000-01;Locus_id=Os07g0538000;Note=Similar to hydrolase%2C hydrolyzing O-glycosyl compounds.;Transcript_evidence=AK102329 (DDBJ%2C Best hit);ORF_evidence=NP_001151472.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J033090M12;TENOR=Os07t0538000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	21152268	21152324	.	-	.	Parent=Os07t0538000-01
Chr07	irgsp1_rep	CDS	21152195	21152267	.	-	0	Parent=Os07t0538000-01
Chr07	irgsp1_rep	CDS	21150785	21152074	.	-	2	Parent=Os07t0538000-01
Chr07	irgsp1_rep	CDS	21150401	21150655	.	-	2	Parent=Os07t0538000-01
Chr07	irgsp1_rep	CDS	21150263	21150321	.	-	2	Parent=Os07t0538000-01
Chr07	irgsp1_rep	three_prime_UTR	21150017	21150262	.	-	.	Parent=Os07t0538000-01
Chr07	irgsp1_rep	mRNA	21155455	21158796	.	-	.	ID=Os07t0538200-01;Name=Os07t0538200-01;Locus_id=Os07g0538200;Oryzabase Gene Name Synonym(s)=Cysteine-rich receptor-like kinase;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK103518 (DDBJ%2C Best hit);ORF_evidence=NP_001149752.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Gnk2-homologous domain (IPR002902),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033131H17;Oryzabase=19083;TENOR=Os07t0538200-01
Chr07	irgsp1_rep	five_prime_UTR	21158654	21158796	.	-	.	Parent=Os07t0538200-01
Chr07	irgsp1_rep	CDS	21157699	21158653	.	-	0	Parent=Os07t0538200-01
Chr07	irgsp1_rep	CDS	21157116	21157244	.	-	2	Parent=Os07t0538200-01
Chr07	irgsp1_rep	CDS	21156882	21157021	.	-	2	Parent=Os07t0538200-01
Chr07	irgsp1_rep	CDS	21156587	21156797	.	-	0	Parent=Os07t0538200-01
Chr07	irgsp1_rep	CDS	21156226	21156463	.	-	2	Parent=Os07t0538200-01
Chr07	irgsp1_rep	CDS	21155981	21156134	.	-	1	Parent=Os07t0538200-01
Chr07	irgsp1_rep	CDS	21155594	21155866	.	-	0	Parent=Os07t0538200-01
Chr07	irgsp1_rep	three_prime_UTR	21155455	21155593	.	-	.	Parent=Os07t0538200-01
Chr07	irgsp1_rep	mRNA	21155455	21158666	.	-	.	ID=Os07t0538200-02;Name=Os07t0538200-02;Locus_id=Os07g0538200;Oryzabase Gene Name Synonym(s)=Cysteine-rich receptor-like kinase;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK102249 (DDBJ%2C Best hit);ORF_evidence=NP_001149752.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Gnk2-homologous domain (IPR002902),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033088G15;Oryzabase=19083;TENOR=Os07t0538200-02
Chr07	irgsp1_rep	five_prime_UTR	21158654	21158666	.	-	.	Parent=Os07t0538200-02
Chr07	irgsp1_rep	CDS	21157699	21158653	.	-	0	Parent=Os07t0538200-02
Chr07	irgsp1_rep	CDS	21157116	21157244	.	-	2	Parent=Os07t0538200-02
Chr07	irgsp1_rep	CDS	21156882	21157021	.	-	2	Parent=Os07t0538200-02
Chr07	irgsp1_rep	CDS	21156587	21156797	.	-	0	Parent=Os07t0538200-02
Chr07	irgsp1_rep	CDS	21156226	21156463	.	-	2	Parent=Os07t0538200-02
Chr07	irgsp1_rep	CDS	21155981	21156134	.	-	1	Parent=Os07t0538200-02
Chr07	irgsp1_rep	CDS	21155594	21155866	.	-	0	Parent=Os07t0538200-02
Chr07	irgsp1_rep	three_prime_UTR	21155455	21155593	.	-	.	Parent=Os07t0538200-02
Chr07	irgsp1_rep	mRNA	21155658	21158493	.	+	.	ID=Os07t0538250-00;Name=Os07t0538250-00;Locus_id=Os07g0538250;Note=Hypothetical protein.;Transcript_evidence=tplb0023l14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0538250-00
Chr07	irgsp1_rep	five_prime_UTR	21155658	21155882	.	+	.	Parent=Os07t0538250-00
Chr07	irgsp1_rep	five_prime_UTR	21155990	21156112	.	+	.	Parent=Os07t0538250-00
Chr07	irgsp1_rep	five_prime_UTR	21156209	21156451	.	+	.	Parent=Os07t0538250-00
Chr07	irgsp1_rep	five_prime_UTR	21156575	21156799	.	+	.	Parent=Os07t0538250-00
Chr07	irgsp1_rep	five_prime_UTR	21156879	21157007	.	+	.	Parent=Os07t0538250-00
Chr07	irgsp1_rep	five_prime_UTR	21157584	21157655	.	+	.	Parent=Os07t0538250-00
Chr07	irgsp1_rep	CDS	21157656	21158024	.	+	0	Parent=Os07t0538250-00
Chr07	irgsp1_rep	three_prime_UTR	21158025	21158493	.	+	.	Parent=Os07t0538250-00
Chr07	irgsp1_rep	mRNA	21160884	21163894	.	-	.	ID=Os07t0538300-01;Name=Os07t0538300-01;Locus_id=Os07g0538300;Note=Hypothetical conserved gene.;Transcript_evidence=AK241204 (DDBJ%2C Best hit);ORF_evidence=Q6YVV7 (UniProt);InterPro=Gnk2-homologous domain (IPR002902),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320);NIAS_FLcDNA=J065122E21;TENOR=Os07t0538300-01;KEGG=Os07t0538300-01
Chr07	irgsp1_rep	five_prime_UTR	21163848	21163894	.	-	.	Parent=Os07t0538300-01
Chr07	irgsp1_rep	CDS	21163423	21163847	.	-	0	Parent=Os07t0538300-01
Chr07	irgsp1_rep	CDS	21162935	21163353	.	-	1	Parent=Os07t0538300-01
Chr07	irgsp1_rep	CDS	21162725	21162850	.	-	2	Parent=Os07t0538300-01
Chr07	irgsp1_rep	CDS	21162515	21162645	.	-	2	Parent=Os07t0538300-01
Chr07	irgsp1_rep	three_prime_UTR	21162208	21162514	.	-	.	Parent=Os07t0538300-01
Chr07	irgsp1_rep	three_prime_UTR	21161768	21162005	.	-	.	Parent=Os07t0538300-01
Chr07	irgsp1_rep	three_prime_UTR	21161543	21161681	.	-	.	Parent=Os07t0538300-01
Chr07	irgsp1_rep	three_prime_UTR	21160884	21161437	.	-	.	Parent=Os07t0538300-01
Chr07	irgsp1_rep	mRNA	21167408	21167925	.	-	.	ID=Os07t0538350-00;Name=Os07t0538350-00;Locus_id=Os07g0538350;Note=Hypothetical protein.;Transcript_evidence=AK370832 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0538350-00
Chr07	irgsp1_rep	five_prime_UTR	21167924	21167925	.	-	.	Parent=Os07t0538350-00
Chr07	irgsp1_rep	CDS	21167408	21167923	.	-	0	Parent=Os07t0538350-00
Chr07	irgsp1_rep	mRNA	21168993	21170678	.	+	.	ID=Os07t0538400-01;Name=Os07t0538400-01;Locus_id=Os07g0538400;CGSNL Gene Symbol=RLCK235;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 235;Oryzabase Gene Symbol Synonym(s)=OsRLCK235;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 235;Note=Similar to Receptor-like protein kinase 4.;Transcript_evidence=AK112096 (DDBJ%2C Best hit);ORF_evidence=NP_001149752.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-107-H06;Oryzabase=18927;Expression=AK112096;TENOR=Os07t0538400-01;KEGG=Os07t0538400-01
Chr07	irgsp1_rep	five_prime_UTR	21168993	21168993	.	+	.	Parent=Os07t0538400-01
Chr07	irgsp1_rep	CDS	21168994	21169131	.	+	0	Parent=Os07t0538400-01
Chr07	irgsp1_rep	CDS	21169216	21169426	.	+	0	Parent=Os07t0538400-01
Chr07	irgsp1_rep	CDS	21169526	21169763	.	+	2	Parent=Os07t0538400-01
Chr07	irgsp1_rep	CDS	21169860	21170010	.	+	1	Parent=Os07t0538400-01
Chr07	irgsp1_rep	CDS	21170114	21170404	.	+	0	Parent=Os07t0538400-01
Chr07	irgsp1_rep	three_prime_UTR	21170405	21170678	.	+	.	Parent=Os07t0538400-01
Chr07	irgsp1_rep	mRNA	21175222	21178518	.	+	.	ID=Os07t0538700-01;Name=Os07t0538700-01;Locus_id=Os07g0538700;Note=Hypothetical conserved gene.;Transcript_evidence=AK243554 (DDBJ%2C Best hit);ORF_evidence=B8B6Z2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Gnk2-homologous domain (IPR002902),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J100079M10;TENOR=Os07t0538700-01;KEGG=Os07t0538700-01
Chr07	irgsp1_rep	five_prime_UTR	21175222	21175335	.	+	.	Parent=Os07t0538700-01
Chr07	irgsp1_rep	CDS	21175336	21175781	.	+	0	Parent=Os07t0538700-01
Chr07	irgsp1_rep	CDS	21175895	21176316	.	+	1	Parent=Os07t0538700-01
Chr07	irgsp1_rep	CDS	21176571	21176696	.	+	2	Parent=Os07t0538700-01
Chr07	irgsp1_rep	CDS	21176777	21176898	.	+	2	Parent=Os07t0538700-01
Chr07	irgsp1_rep	CDS	21176992	21177202	.	+	0	Parent=Os07t0538700-01
Chr07	irgsp1_rep	CDS	21177534	21177771	.	+	2	Parent=Os07t0538700-01
Chr07	irgsp1_rep	CDS	21177863	21178010	.	+	1	Parent=Os07t0538700-01
Chr07	irgsp1_rep	CDS	21178126	21178458	.	+	0	Parent=Os07t0538700-01
Chr07	irgsp1_rep	three_prime_UTR	21178459	21178518	.	+	.	Parent=Os07t0538700-01
Chr07	irgsp1_rep	mRNA	21223274	21225870	.	-	.	ID=Os07t0539100-01;Name=Os07t0539100-01;Locus_id=Os07g0539100;CGSNL Gene Symbol=GNS11;CGSNL Gene Name=BETA-1%2C3-GLUCANASE 11;Oryzabase Gene Symbol Synonym(s)=Gns11%2C OsGns11;Oryzabase Gene Name Synonym(s)=beta-1%2C 3-glucanase 11;Note=Glycoside hydrolase%2C family 17 protein.;Transcript_evidence=AK067173 (DDBJ%2C Best hit);ORF_evidence=NP_001151472.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J013097O21;Oryzabase=13929;Expression=AK067173;TENOR=Os07t0539100-01;KEGG=Os07t0539100-01
Chr07	irgsp1_rep	five_prime_UTR	21225749	21225870	.	-	.	Parent=Os07t0539100-01
Chr07	irgsp1_rep	five_prime_UTR	21225551	21225657	.	-	.	Parent=Os07t0539100-01
Chr07	irgsp1_rep	CDS	21225478	21225550	.	-	0	Parent=Os07t0539100-01
Chr07	irgsp1_rep	CDS	21224077	21225372	.	-	2	Parent=Os07t0539100-01
Chr07	irgsp1_rep	CDS	21223666	21223920	.	-	2	Parent=Os07t0539100-01
Chr07	irgsp1_rep	CDS	21223471	21223508	.	-	2	Parent=Os07t0539100-01
Chr07	irgsp1_rep	three_prime_UTR	21223274	21223470	.	-	.	Parent=Os07t0539100-01
Chr07	irgsp1_rep	mRNA	21223272	21225595	.	-	.	ID=Os07t0539100-02;Name=Os07t0539100-02;Locus_id=Os07g0539100;CGSNL Gene Symbol=GNS11;CGSNL Gene Name=BETA-1%2C3-GLUCANASE 11;Oryzabase Gene Symbol Synonym(s)=Gns11%2C OsGns11;Oryzabase Gene Name Synonym(s)=beta-1%2C 3-glucanase 11;Note=Glycoside hydrolase%2C family 17 protein.;Transcript_evidence=AK062569 (DDBJ%2C Best hit);ORF_evidence=NP_001151472.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-046-A08;Oryzabase=13929;Expression=AK062569;TENOR=Os07t0539100-02;KEGG=Os07t0539100-02
Chr07	irgsp1_rep	five_prime_UTR	21225551	21225595	.	-	.	Parent=Os07t0539100-02
Chr07	irgsp1_rep	CDS	21225478	21225550	.	-	0	Parent=Os07t0539100-02
Chr07	irgsp1_rep	CDS	21224077	21225372	.	-	2	Parent=Os07t0539100-02
Chr07	irgsp1_rep	CDS	21223666	21223920	.	-	2	Parent=Os07t0539100-02
Chr07	irgsp1_rep	CDS	21223471	21223508	.	-	2	Parent=Os07t0539100-02
Chr07	irgsp1_rep	three_prime_UTR	21223272	21223470	.	-	.	Parent=Os07t0539100-02
Chr07	irgsp1_rep	mRNA	21232124	21235788	.	-	.	ID=Os07t0539200-01;Name=Os07t0539200-01;Locus_id=Os07g0539200;Note=Conserved hypothetical protein.;Transcript_evidence=AK119381 (DDBJ%2C Best hit);ORF_evidence=A3BKQ8 (UniProt);NIAS_FLcDNA=001-132-B04;TENOR=Os07t0539200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	21234385	21235788	.	-	0	Parent=Os07t0539200-01
Chr07	irgsp1_rep	three_prime_UTR	21233117	21234384	.	-	.	Parent=Os07t0539200-01
Chr07	irgsp1_rep	three_prime_UTR	21232124	21232750	.	-	.	Parent=Os07t0539200-01
Chr07	irgsp1_rep	mRNA	21238284	21241263	.	-	.	ID=Os07t0539300-01;Name=Os07t0539300-01;Locus_id=Os07g0539300;CGSNL Gene Symbol=GNS13;CGSNL Gene Name=BETA-1%2C3-GLUCANASE 13;Oryzabase Gene Symbol Synonym(s)=Gns13%2C OsGns13;Oryzabase Gene Name Synonym(s)=beta-1%2C 3-glucanase 13;Note=Glycoside hydrolase%2C family 17 protein.;Transcript_evidence=AK066237 (DDBJ%2C Best hit);ORF_evidence=NP_001151472.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J013058G09;Oryzabase=13931;Expression=AK066237;TENOR=Os07t0539300-01;KEGG=Os07t0539300-01
Chr07	irgsp1_rep	five_prime_UTR	21240848	21241263	.	-	.	Parent=Os07t0539300-01
Chr07	irgsp1_rep	five_prime_UTR	21240483	21240578	.	-	.	Parent=Os07t0539300-01
Chr07	irgsp1_rep	CDS	21240407	21240482	.	-	0	Parent=Os07t0539300-01
Chr07	irgsp1_rep	CDS	21239024	21240325	.	-	2	Parent=Os07t0539300-01
Chr07	irgsp1_rep	CDS	21238657	21238911	.	-	2	Parent=Os07t0539300-01
Chr07	irgsp1_rep	CDS	21238418	21238518	.	-	2	Parent=Os07t0539300-01
Chr07	irgsp1_rep	three_prime_UTR	21238284	21238417	.	-	.	Parent=Os07t0539300-01
Chr07	irgsp1_rep	mRNA	21238304	21241013	.	-	.	ID=Os07t0539300-02;Name=Os07t0539300-02;Locus_id=Os07g0539300;CGSNL Gene Symbol=GNS13;CGSNL Gene Name=BETA-1%2C3-GLUCANASE 13;Oryzabase Gene Symbol Synonym(s)=Gns13%2C OsGns13;Oryzabase Gene Name Synonym(s)=beta-1%2C 3-glucanase 13;Note=Glycoside hydrolase%2C family 17 protein.;Transcript_evidence=AK067528 (DDBJ%2C Best hit);ORF_evidence=Q6YVU3 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J013107E22;Oryzabase=13931;Expression=AK067528;TENOR=Os07t0539300-02;KEGG=Os07t0539300-02
Chr07	irgsp1_rep	five_prime_UTR	21240848	21241013	.	-	.	Parent=Os07t0539300-02
Chr07	irgsp1_rep	five_prime_UTR	21240483	21240578	.	-	.	Parent=Os07t0539300-02
Chr07	irgsp1_rep	CDS	21240407	21240482	.	-	0	Parent=Os07t0539300-02
Chr07	irgsp1_rep	CDS	21239753	21240325	.	-	2	Parent=Os07t0539300-02
Chr07	irgsp1_rep	CDS	21238657	21238767	.	-	2	Parent=Os07t0539300-02
Chr07	irgsp1_rep	CDS	21238418	21238518	.	-	2	Parent=Os07t0539300-02
Chr07	irgsp1_rep	three_prime_UTR	21238304	21238417	.	-	.	Parent=Os07t0539300-02
Chr07	irgsp1_rep	mRNA	21238656	21239437	.	+	.	ID=Os07t0539350-00;Name=Os07t0539350-00;Locus_id=Os07g0539350;Note=Non-protein coding transcript.;Transcript_evidence=BT019229 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0539350-00
Chr07	irgsp1_rep	exon	21238656	21238894	.	+	.	Parent=Os07t0539350-00
Chr07	irgsp1_rep	exon	21239182	21239437	.	+	.	Parent=Os07t0539350-00
Chr07	irgsp1_rep	mRNA	21245036	21247034	.	-	.	ID=Os07t0539400-00;Name=Os07t0539400-00;Locus_id=Os07g0539400;CGSNL Gene Symbol=GNS12;CGSNL Gene Name=BETA-1%2C3-GLUCANASE 12;Oryzabase Gene Symbol Synonym(s)=Gns12%2C OsGns12;Oryzabase Gene Name Synonym(s)=beta-1%2C 3-glucanase 12;Note=Similar to hydrolase%2C hydrolyzing O-glycosyl compounds.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001151472.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);Oryzabase=13930;TENOR=Os07t0539400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	21245777	21247034	.	-	0	Parent=Os07t0539400-00
Chr07	irgsp1_rep	CDS	21245424	21245678	.	-	2	Parent=Os07t0539400-00
Chr07	irgsp1_rep	CDS	21245036	21245088	.	-	2	Parent=Os07t0539400-00
Chr07	irgsp1_rep	mRNA	21265863	21269388	.	+	.	ID=Os07t0539700-01;Name=Os07t0539700-01;Locus_id=Os07g0539700;Note=Hypothetical conserved gene.;Transcript_evidence=AK289170 (DDBJ%2C Best hit);ORF_evidence=B9FXQ0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Gnk2-homologous domain (IPR002902),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J100012E23;TENOR=Os07t0539700-01;KEGG=Os07t0539700-01
Chr07	irgsp1_rep	five_prime_UTR	21265863	21266041	.	+	.	Parent=Os07t0539700-01
Chr07	irgsp1_rep	CDS	21266042	21266490	.	+	0	Parent=Os07t0539700-01
Chr07	irgsp1_rep	CDS	21266585	21267015	.	+	1	Parent=Os07t0539700-01
Chr07	irgsp1_rep	CDS	21267337	21267462	.	+	2	Parent=Os07t0539700-01
Chr07	irgsp1_rep	CDS	21267541	21267662	.	+	2	Parent=Os07t0539700-01
Chr07	irgsp1_rep	CDS	21267756	21267966	.	+	0	Parent=Os07t0539700-01
Chr07	irgsp1_rep	CDS	21268346	21268583	.	+	2	Parent=Os07t0539700-01
Chr07	irgsp1_rep	CDS	21268680	21268827	.	+	1	Parent=Os07t0539700-01
Chr07	irgsp1_rep	CDS	21268979	21269311	.	+	0	Parent=Os07t0539700-01
Chr07	irgsp1_rep	three_prime_UTR	21269312	21269388	.	+	.	Parent=Os07t0539700-01
Chr07	irgsp1_rep	mRNA	21280322	21282626	.	-	.	ID=Os07t0539900-01;Name=Os07t0539900-01;Locus_id=Os07g0539900;Oryzabase Gene Name Synonym(s)=PR2/Beta-1%2C 3-glucanase%2C Glycosyl hydrolase 17 family protein;Note=Similar to Beta-1%2C3-glucanase-like protein.;Transcript_evidence=AK098943 (DDBJ%2C Best hit),AK071889 (DDBJ%2C Best hit);ORF_evidence=NP_001151472.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J013047P11,J013047P08;Oryzabase=19078;Expression=AK098943;TENOR=Os07t0539900-01;KEGG=Os07t0539900-01
Chr07	irgsp1_rep	five_prime_UTR	21282564	21282626	.	-	.	Parent=Os07t0539900-01
Chr07	irgsp1_rep	CDS	21281048	21282563	.	-	0	Parent=Os07t0539900-01
Chr07	irgsp1_rep	CDS	21280695	21280949	.	-	2	Parent=Os07t0539900-01
Chr07	irgsp1_rep	CDS	21280512	21280549	.	-	2	Parent=Os07t0539900-01
Chr07	irgsp1_rep	three_prime_UTR	21280322	21280511	.	-	.	Parent=Os07t0539900-01
Chr07	irgsp1_rep	mRNA	21291968	21292934	.	+	.	ID=Os07t0539950-01;Name=Os07t0539950-01;Locus_id=Os07g0539950;Note=Conserved hypothetical protein.;Transcript_evidence=AK241485 (DDBJ%2C Best hit);ORF_evidence=NP_001175239.1 (RefSeq);NIAS_FLcDNA=J065166J23;TENOR=Os07t0539950-01;KEGG=Os07t0539950-01
Chr07	irgsp1_rep	five_prime_UTR	21291968	21292479	.	+	.	Parent=Os07t0539950-01
Chr07	irgsp1_rep	CDS	21292480	21292722	.	+	0	Parent=Os07t0539950-01
Chr07	irgsp1_rep	three_prime_UTR	21292723	21292934	.	+	.	Parent=Os07t0539950-01
Chr07	irgsp1_rep	mRNA	21293128	21294251	.	-	.	ID=Os07t0540000-00;Name=Os07t0540000-00;Locus_id=Os07g0540000;Note=Similar to Wax synthase isoform 1.;Transcript_evidence=EU959294 (DDBJ);ORF_evidence=B6TS92 (UniProt);InterPro=Membrane bound O-acyl transferase%2C MBOAT (IPR004299),Wax synthase (IPR017088);TENOR=Os07t0540000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	21294193	21294251	.	-	.	Parent=Os07t0540000-00
Chr07	irgsp1_rep	CDS	21293128	21294192	.	-	0	Parent=Os07t0540000-00
Chr07	irgsp1_rep	mRNA	21295200	21299576	.	-	.	ID=Os07t0540100-01;Name=Os07t0540100-01;Locus_id=Os07g0540100;Oryzabase Gene Symbol Synonym(s)=AGP%2C OsAGP;Oryzabase Gene Name Synonym(s)=Arabinogalactan protein;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK101714 (DDBJ%2C Best hit);ORF_evidence=NP_001147287.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Gnk2-homologous domain (IPR002902),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J033060N20;Oryzabase=23026;Expression=AK101714;TENOR=Os07t0540100-01;KEGG=Os07t0540100-01
Chr07	irgsp1_rep	five_prime_UTR	21299493	21299576	.	-	.	Parent=Os07t0540100-01
Chr07	irgsp1_rep	CDS	21298625	21299492	.	-	0	Parent=Os07t0540100-01
Chr07	irgsp1_rep	CDS	21297018	21297158	.	-	2	Parent=Os07t0540100-01
Chr07	irgsp1_rep	CDS	21296793	21296923	.	-	2	Parent=Os07t0540100-01
Chr07	irgsp1_rep	CDS	21296496	21296706	.	-	0	Parent=Os07t0540100-01
Chr07	irgsp1_rep	CDS	21296165	21296402	.	-	2	Parent=Os07t0540100-01
Chr07	irgsp1_rep	CDS	21295915	21296065	.	-	1	Parent=Os07t0540100-01
Chr07	irgsp1_rep	CDS	21295462	21295812	.	-	0	Parent=Os07t0540100-01
Chr07	irgsp1_rep	three_prime_UTR	21295200	21295461	.	-	.	Parent=Os07t0540100-01
Chr07	irgsp1_rep	mRNA	21299633	21311307	.	-	.	ID=Os07t0540200-01;Name=Os07t0540200-01;Locus_id=Os07g0540200;Note=Similar to OSIGBa0116M22.12 protein.;Transcript_evidence=AK105928 (DDBJ%2C Best hit);ORF_evidence=Q01JY7 (UniProt);InterPro=FAM175 family (IPR023238);NIAS_FLcDNA=001-205-A11;Expression=AK105928;TENOR=Os07t0540200-01;KEGG=Os07t0540200-01
Chr07	irgsp1_rep	five_prime_UTR	21311282	21311307	.	-	.	Parent=Os07t0540200-01
Chr07	irgsp1_rep	CDS	21310451	21311281	.	-	0	Parent=Os07t0540200-01
Chr07	irgsp1_rep	CDS	21308693	21308740	.	-	0	Parent=Os07t0540200-01
Chr07	irgsp1_rep	three_prime_UTR	21308666	21308692	.	-	.	Parent=Os07t0540200-01
Chr07	irgsp1_rep	three_prime_UTR	21299633	21300040	.	-	.	Parent=Os07t0540200-01
Chr07	irgsp1_rep	mRNA	21315542	21316587	.	-	.	ID=Os07t0540366-01;Name=Os07t0540366-01;Locus_id=Os07g0540366;CGSNL Gene Symbol=DTC1;CGSNL Gene Name=DEFECTIVE TAPETUM CELL DEATH 1;Oryzabase Gene Name Synonym(s)=Defective Tapetum Cell Death 1;Note=Similar to kelch repeat-containing protein.;Transcript_evidence=AK242524 (DDBJ%2C Best hit);ORF_evidence=NP_001175240.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Kelch repeat type 1 (IPR006652),Galactose oxidase%2C beta-propeller (IPR015916);NIAS_FLcDNA=J080315B01;Oryzabase=21929;TENOR=Os07t0540366-01;KEGG=Os07t0540366-01
Chr07	irgsp1_rep	five_prime_UTR	21316587	21316587	.	-	.	Parent=Os07t0540366-01
Chr07	irgsp1_rep	CDS	21316398	21316586	.	-	0	Parent=Os07t0540366-01
Chr07	irgsp1_rep	CDS	21315813	21315902	.	-	0	Parent=Os07t0540366-01
Chr07	irgsp1_rep	three_prime_UTR	21315542	21315812	.	-	.	Parent=Os07t0540366-01
Chr07	irgsp1_rep	mRNA	21333060	21335665	.	-	.	ID=Os07t0540500-00;Name=Os07t0540500-00;Locus_id=Os07g0540500;CGSNL Gene Symbol=RLCK236;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 236;Oryzabase Gene Symbol Synonym(s)=OsRLCK236;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 236;Note=Similar to receptor-like protein kinase RK20-1.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001152742.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);Oryzabase=18928;TENOR=Os07t0540500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	21335540	21335665	.	-	0	Parent=Os07t0540500-00
Chr07	irgsp1_rep	CDS	21335267	21335422	.	-	0	Parent=Os07t0540500-00
Chr07	irgsp1_rep	CDS	21333299	21333449	.	-	0	Parent=Os07t0540500-00
Chr07	irgsp1_rep	CDS	21333060	21333190	.	-	2	Parent=Os07t0540500-00
Chr07	irgsp1_rep	mRNA	21345784	21346908	.	-	.	ID=Os07t0540600-00;Name=Os07t0540600-00;Locus_id=Os07g0540600;Note=Gnk2-homologous domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001059892.2 (RefSeq);InterPro=Gnk2-homologous domain (IPR002902);TENOR=Os07t0540600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	21345784	21346908	.	-	0	Parent=Os07t0540600-00
Chr07	irgsp1_rep	mRNA	21353515	21356534	.	+	.	ID=Os07t0540700-00;Name=Os07t0540700-00;Locus_id=Os07g0540700;Note=Hypothetical protein.;Transcript_evidence=tplb0040j01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0540700-00
Chr07	irgsp1_rep	five_prime_UTR	21353515	21353690	.	+	.	Parent=Os07t0540700-00
Chr07	irgsp1_rep	five_prime_UTR	21353793	21353959	.	+	.	Parent=Os07t0540700-00
Chr07	irgsp1_rep	five_prime_UTR	21354298	21354575	.	+	.	Parent=Os07t0540700-00
Chr07	irgsp1_rep	CDS	21354576	21354583	.	+	0	Parent=Os07t0540700-00
Chr07	irgsp1_rep	CDS	21355557	21356534	.	+	1	Parent=Os07t0540700-00
Chr07	irgsp1_rep	mRNA	21353729	21356652	.	-	.	ID=Os07t0540800-00;Name=Os07t0540800-00;Locus_id=Os07g0540800;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001059893.2 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Gnk2-homologous domain (IPR002902),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os07t0540800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	21355758	21356652	.	-	0	Parent=Os07t0540800-00
Chr07	irgsp1_rep	CDS	21354597	21354712	.	-	2	Parent=Os07t0540800-00
Chr07	irgsp1_rep	CDS	21354308	21354518	.	-	0	Parent=Os07t0540800-00
Chr07	irgsp1_rep	CDS	21353729	21353967	.	-	2	Parent=Os07t0540800-00
Chr07	irgsp1_rep	mRNA	21359653	21366555	.	+	.	ID=Os07t0541000-01;Name=Os07t0541000-01;Locus_id=Os07g0541000;Note=Similar to Receptor protein kinase.;Transcript_evidence=AK100722 (DDBJ%2C Best hit);ORF_evidence=NP_001147287.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Gnk2-homologous domain (IPR002902),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023116H24;Expression=AK100722;TENOR=Os07t0541000-01;KEGG=Os07t0541000-01
Chr07	irgsp1_rep	five_prime_UTR	21359653	21359709	.	+	.	Parent=Os07t0541000-01
Chr07	irgsp1_rep	CDS	21359710	21360613	.	+	0	Parent=Os07t0541000-01
Chr07	irgsp1_rep	CDS	21361331	21361468	.	+	2	Parent=Os07t0541000-01
Chr07	irgsp1_rep	CDS	21361996	21362126	.	+	2	Parent=Os07t0541000-01
Chr07	irgsp1_rep	CDS	21365109	21365319	.	+	0	Parent=Os07t0541000-01
Chr07	irgsp1_rep	CDS	21365449	21365686	.	+	2	Parent=Os07t0541000-01
Chr07	irgsp1_rep	CDS	21365765	21365915	.	+	1	Parent=Os07t0541000-01
Chr07	irgsp1_rep	CDS	21366031	21366393	.	+	0	Parent=Os07t0541000-01
Chr07	irgsp1_rep	three_prime_UTR	21366394	21366555	.	+	.	Parent=Os07t0541000-01
Chr07	irgsp1_rep	mRNA	21368384	21374650	.	-	.	ID=Os07t0541200-00;Name=Os07t0541200-00;Locus_id=Os07g0541200;Note=Similar to receptor-like serine-threonine protein kinase.;Transcript_evidence=BT055222 (DDBJ);ORF_evidence=NP_001147287.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Gnk2-homologous domain (IPR002902),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os07t0541200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	21373762	21374650	.	-	0	Parent=Os07t0541200-00
Chr07	irgsp1_rep	CDS	21370660	21370828	.	-	2	Parent=Os07t0541200-00
Chr07	irgsp1_rep	CDS	21370164	21370266	.	-	1	Parent=Os07t0541200-00
Chr07	irgsp1_rep	CDS	21369452	21369662	.	-	0	Parent=Os07t0541200-00
Chr07	irgsp1_rep	CDS	21369088	21369325	.	-	2	Parent=Os07t0541200-00
Chr07	irgsp1_rep	CDS	21368846	21368996	.	-	1	Parent=Os07t0541200-00
Chr07	irgsp1_rep	CDS	21368385	21368723	.	-	0	Parent=Os07t0541200-00
Chr07	irgsp1_rep	three_prime_UTR	21368384	21368384	.	-	.	Parent=Os07t0541200-00
Chr07	irgsp1_rep	mRNA	21378090	21381229	.	+	.	ID=Os07t0541400-01;Name=Os07t0541400-01;Locus_id=Os07g0541400;Note=Similar to Receptor protein kinase.;Transcript_evidence=AK111650 (DDBJ%2C Best hit);ORF_evidence=NP_001147287.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Gnk2-homologous domain (IPR002902),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J013130K01;Expression=AK111650;TENOR=Os07t0541400-01;KEGG=Os07t0541400-01
Chr07	irgsp1_rep	five_prime_UTR	21378090	21378128	.	+	.	Parent=Os07t0541400-01
Chr07	irgsp1_rep	CDS	21378129	21378993	.	+	0	Parent=Os07t0541400-01
Chr07	irgsp1_rep	CDS	21379185	21379325	.	+	2	Parent=Os07t0541400-01
Chr07	irgsp1_rep	CDS	21379572	21379702	.	+	2	Parent=Os07t0541400-01
Chr07	irgsp1_rep	CDS	21379779	21379989	.	+	0	Parent=Os07t0541400-01
Chr07	irgsp1_rep	CDS	21380111	21380348	.	+	2	Parent=Os07t0541400-01
Chr07	irgsp1_rep	CDS	21380432	21380582	.	+	1	Parent=Os07t0541400-01
Chr07	irgsp1_rep	CDS	21380668	21381018	.	+	0	Parent=Os07t0541400-01
Chr07	irgsp1_rep	three_prime_UTR	21381019	21381229	.	+	.	Parent=Os07t0541400-01
Chr07	irgsp1_rep	mRNA	21384789	21388269	.	-	.	ID=Os07t0541500-01;Name=Os07t0541500-01;Locus_id=Os07g0541500;Note=Similar to KI domain interacting kinase 1.;Transcript_evidence=AK111550 (DDBJ%2C Best hit);ORF_evidence=NP_001147287.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Gnk2-homologous domain (IPR002902),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013058C07;Expression=AK111550;TENOR=Os07t0541500-01;KEGG=Os07t0541500-01
Chr07	irgsp1_rep	five_prime_UTR	21388230	21388269	.	-	.	Parent=Os07t0541500-01
Chr07	irgsp1_rep	CDS	21387404	21388229	.	-	0	Parent=Os07t0541500-01
Chr07	irgsp1_rep	CDS	21387148	21387285	.	-	2	Parent=Os07t0541500-01
Chr07	irgsp1_rep	CDS	21386323	21386450	.	-	2	Parent=Os07t0541500-01
Chr07	irgsp1_rep	CDS	21386028	21386238	.	-	0	Parent=Os07t0541500-01
Chr07	irgsp1_rep	CDS	21385672	21385909	.	-	2	Parent=Os07t0541500-01
Chr07	irgsp1_rep	CDS	21385450	21385600	.	-	1	Parent=Os07t0541500-01
Chr07	irgsp1_rep	CDS	21385113	21385358	.	-	0	Parent=Os07t0541500-01
Chr07	irgsp1_rep	three_prime_UTR	21384789	21385112	.	-	.	Parent=Os07t0541500-01
Chr07	irgsp1_rep	mRNA	21392000	21393560	.	-	.	ID=Os07t0541600-01;Name=Os07t0541600-01;Locus_id=Os07g0541600;Note=Similar to cDNA clone:002-112-D06%2C full insert sequence.;Transcript_evidence=AK110523 (DDBJ%2C Best hit);ORF_evidence=B7E9R9 (UniProt);NIAS_FLcDNA=002-167-H06;TENOR=Os07t0541600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	21392471	21393560	.	-	.	Parent=Os07t0541600-01
Chr07	irgsp1_rep	CDS	21392469	21392470	.	-	0	Parent=Os07t0541600-01
Chr07	irgsp1_rep	CDS	21392000	21392371	.	-	1	Parent=Os07t0541600-01
Chr07	irgsp1_rep	mRNA	21391503	21393262	.	-	.	ID=Os07t0541600-02;Name=Os07t0541600-02;Locus_id=Os07g0541600;Note=Conserved hypothetical protein.;Transcript_evidence=AK064568 (DDBJ%2C Best hit);ORF_evidence=B9FXR0 (UniProt);NIAS_FLcDNA=002-112-D06;Expression=AK064568;TENOR=Os07t0541600-02;KEGG=Os07t0541600-02
Chr07	irgsp1_rep	five_prime_UTR	21392386	21393262	.	-	.	Parent=Os07t0541600-02
Chr07	irgsp1_rep	CDS	21391993	21392385	.	-	0	Parent=Os07t0541600-02
Chr07	irgsp1_rep	three_prime_UTR	21391503	21391992	.	-	.	Parent=Os07t0541600-02
Chr07	irgsp1_rep	mRNA	21395341	21396704	.	-	.	ID=Os07t0541700-01;Name=Os07t0541700-01;Locus_id=Os07g0541700;CGSNL Gene Symbol=RLCK237;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 237;Oryzabase Gene Symbol Synonym(s)=OsRLCK237;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 237;Note=Similar to receptor-like serine-threonine protein kinase.;Transcript_evidence=AK105128 (DDBJ%2C Best hit);ORF_evidence=NP_001147287.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-101-E07;Oryzabase=18929;TENOR=Os07t0541700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	21396703	21396704	.	-	.	Parent=Os07t0541700-01
Chr07	irgsp1_rep	CDS	21396651	21396702	.	-	0	Parent=Os07t0541700-01
Chr07	irgsp1_rep	CDS	21396295	21396532	.	-	2	Parent=Os07t0541700-01
Chr07	irgsp1_rep	CDS	21396197	21396197	.	-	1	Parent=Os07t0541700-01
Chr07	irgsp1_rep	three_prime_UTR	21396061	21396196	.	-	.	Parent=Os07t0541700-01
Chr07	irgsp1_rep	three_prime_UTR	21395341	21395777	.	-	.	Parent=Os07t0541700-01
Chr07	irgsp1_rep	mRNA	21407942	21411687	.	-	.	ID=Os07t0541800-01;Name=Os07t0541800-01;Locus_id=Os07g0541800;Note=Similar to KI domain interacting kinase 1.;Transcript_evidence=AK102941 (DDBJ%2C Best hit);ORF_evidence=B7FA79 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Gnk2-homologous domain (IPR002902),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J033114L08;Expression=AK102941;TENOR=Os07t0541800-01;KEGG=Os07t0541800-01
Chr07	irgsp1_rep	five_prime_UTR	21411660	21411687	.	-	.	Parent=Os07t0541800-01
Chr07	irgsp1_rep	CDS	21410813	21411659	.	-	0	Parent=Os07t0541800-01
Chr07	irgsp1_rep	CDS	21409963	21410100	.	-	2	Parent=Os07t0541800-01
Chr07	irgsp1_rep	CDS	21409727	21409854	.	-	2	Parent=Os07t0541800-01
Chr07	irgsp1_rep	CDS	21409238	21409445	.	-	0	Parent=Os07t0541800-01
Chr07	irgsp1_rep	CDS	21408919	21409156	.	-	2	Parent=Os07t0541800-01
Chr07	irgsp1_rep	CDS	21408673	21408826	.	-	1	Parent=Os07t0541800-01
Chr07	irgsp1_rep	CDS	21408073	21408351	.	-	0	Parent=Os07t0541800-01
Chr07	irgsp1_rep	three_prime_UTR	21407942	21408072	.	-	.	Parent=Os07t0541800-01
Chr07	irgsp1_rep	mRNA	21408731	21411623	.	+	.	ID=Os07t0541850-00;Name=Os07t0541850-00;Locus_id=Os07g0541850;Note=Hypothetical protein.;Transcript_evidence=tplb0040j01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0541850-00
Chr07	irgsp1_rep	five_prime_UTR	21408731	21408878	.	+	.	Parent=Os07t0541850-00
Chr07	irgsp1_rep	five_prime_UTR	21408970	21409174	.	+	.	Parent=Os07t0541850-00
Chr07	irgsp1_rep	five_prime_UTR	21409257	21409576	.	+	.	Parent=Os07t0541850-00
Chr07	irgsp1_rep	five_prime_UTR	21409953	21410021	.	+	.	Parent=Os07t0541850-00
Chr07	irgsp1_rep	CDS	21410022	21410080	.	+	0	Parent=Os07t0541850-00
Chr07	irgsp1_rep	CDS	21410822	21411623	.	+	1	Parent=Os07t0541850-00
Chr07	irgsp1_rep	mRNA	21414427	21419296	.	-	.	ID=Os07t0541900-01;Name=Os07t0541900-01;Locus_id=Os07g0541900;Note=Similar to KI domain interacting kinase 1.;Transcript_evidence=AK109699 (DDBJ%2C Best hit);ORF_evidence=B7FA79 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Gnk2-homologous domain (IPR002902),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=002-145-F04;Expression=AK109699;TENOR=Os07t0541900-01;KEGG=Os07t0541900-01
Chr07	irgsp1_rep	five_prime_UTR	21419234	21419296	.	-	.	Parent=Os07t0541900-01
Chr07	irgsp1_rep	CDS	21418399	21419233	.	-	0	Parent=Os07t0541900-01
Chr07	irgsp1_rep	CDS	21417687	21417824	.	-	2	Parent=Os07t0541900-01
Chr07	irgsp1_rep	CDS	21417463	21417590	.	-	2	Parent=Os07t0541900-01
Chr07	irgsp1_rep	CDS	21415563	21415770	.	-	0	Parent=Os07t0541900-01
Chr07	irgsp1_rep	CDS	21415229	21415466	.	-	2	Parent=Os07t0541900-01
Chr07	irgsp1_rep	CDS	21414992	21415142	.	-	1	Parent=Os07t0541900-01
Chr07	irgsp1_rep	CDS	21414578	21414853	.	-	0	Parent=Os07t0541900-01
Chr07	irgsp1_rep	three_prime_UTR	21414427	21414577	.	-	.	Parent=Os07t0541900-01
Chr07	irgsp1_rep	mRNA	21414629	21419315	.	+	.	ID=Os07t0542067-00;Name=Os07t0542067-00;Locus_id=Os07g0542067;Note=Hypothetical protein.;Transcript_evidence=tplb0023l14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0542067-00
Chr07	irgsp1_rep	five_prime_UTR	21414629	21414646	.	+	.	Parent=Os07t0542067-00
Chr07	irgsp1_rep	CDS	21414647	21414849	.	+	0	Parent=Os07t0542067-00
Chr07	irgsp1_rep	CDS	21414983	21415135	.	+	1	Parent=Os07t0542067-00
Chr07	irgsp1_rep	CDS	21415213	21415219	.	+	1	Parent=Os07t0542067-00
Chr07	irgsp1_rep	three_prime_UTR	21415220	21415448	.	+	.	Parent=Os07t0542067-00
Chr07	irgsp1_rep	three_prime_UTR	21415547	21415766	.	+	.	Parent=Os07t0542067-00
Chr07	irgsp1_rep	three_prime_UTR	21417458	21417751	.	+	.	Parent=Os07t0542067-00
Chr07	irgsp1_rep	three_prime_UTR	21418411	21419315	.	+	.	Parent=Os07t0542067-00
Chr07	irgsp1_rep	mRNA	21426394	21431357	.	+	.	ID=Os07t0542232-00;Name=Os07t0542232-00;Locus_id=Os07g0542232;Note=Hypothetical protein.;Transcript_evidence=tplb0023l14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0542232-00
Chr07	irgsp1_rep	five_prime_UTR	21426394	21426606	.	+	.	Parent=Os07t0542232-00
Chr07	irgsp1_rep	five_prime_UTR	21426745	21426937	.	+	.	Parent=Os07t0542232-00
Chr07	irgsp1_rep	five_prime_UTR	21427026	21427211	.	+	.	Parent=Os07t0542232-00
Chr07	irgsp1_rep	five_prime_UTR	21427308	21427525	.	+	.	Parent=Os07t0542232-00
Chr07	irgsp1_rep	five_prime_UTR	21428895	21429017	.	+	.	Parent=Os07t0542232-00
Chr07	irgsp1_rep	five_prime_UTR	21429112	21429274	.	+	.	Parent=Os07t0542232-00
Chr07	irgsp1_rep	CDS	21429275	21429288	.	+	0	Parent=Os07t0542232-00
Chr07	irgsp1_rep	CDS	21430610	21431357	.	+	1	Parent=Os07t0542232-00
Chr07	irgsp1_rep	mRNA	21434796	21437604	.	-	.	ID=Os07t0542400-01;Name=Os07t0542400-01;Locus_id=Os07g0542400;Note=Similar to Receptor protein kinase.;Transcript_evidence=AK111865 (DDBJ%2C Best hit);ORF_evidence=B7FA79 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Gnk2-homologous domain (IPR002902),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J033028F24;Expression=AK111865;TENOR=Os07t0542400-01;KEGG=Os07t0542400-01
Chr07	irgsp1_rep	five_prime_UTR	21437592	21437604	.	-	.	Parent=Os07t0542400-01
Chr07	irgsp1_rep	CDS	21436739	21437591	.	-	0	Parent=Os07t0542400-01
Chr07	irgsp1_rep	CDS	21436471	21436608	.	-	2	Parent=Os07t0542400-01
Chr07	irgsp1_rep	CDS	21436229	21436356	.	-	2	Parent=Os07t0542400-01
Chr07	irgsp1_rep	CDS	21435740	21435947	.	-	0	Parent=Os07t0542400-01
Chr07	irgsp1_rep	CDS	21435402	21435639	.	-	2	Parent=Os07t0542400-01
Chr07	irgsp1_rep	CDS	21435162	21435312	.	-	1	Parent=Os07t0542400-01
Chr07	irgsp1_rep	CDS	21434855	21435040	.	-	0	Parent=Os07t0542400-01
Chr07	irgsp1_rep	three_prime_UTR	21434796	21434854	.	-	.	Parent=Os07t0542400-01
Chr07	irgsp1_rep	mRNA	21434654	21436983	.	-	.	ID=Os07t0542400-02;Name=Os07t0542400-02;Locus_id=Os07g0542400;Note=Similar to receptor-like protein kinase RK20-1.;Transcript_evidence=AK111840 (DDBJ%2C Best hit);ORF_evidence=B7FA79 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Gnk2-homologous domain (IPR002902),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023139I03;Expression=AK111840;TENOR=Os07t0542400-02;KEGG=Os07t0542400-02
Chr07	irgsp1_rep	five_prime_UTR	21436983	21436983	.	-	.	Parent=Os07t0542400-02
Chr07	irgsp1_rep	CDS	21436739	21436982	.	-	0	Parent=Os07t0542400-02
Chr07	irgsp1_rep	CDS	21436471	21436608	.	-	2	Parent=Os07t0542400-02
Chr07	irgsp1_rep	CDS	21436229	21436356	.	-	2	Parent=Os07t0542400-02
Chr07	irgsp1_rep	CDS	21435740	21435947	.	-	0	Parent=Os07t0542400-02
Chr07	irgsp1_rep	CDS	21435402	21435639	.	-	2	Parent=Os07t0542400-02
Chr07	irgsp1_rep	CDS	21435162	21435312	.	-	1	Parent=Os07t0542400-02
Chr07	irgsp1_rep	CDS	21434855	21435040	.	-	0	Parent=Os07t0542400-02
Chr07	irgsp1_rep	three_prime_UTR	21434654	21434854	.	-	.	Parent=Os07t0542400-02
Chr07	irgsp1_rep	mRNA	21441037	21444823	.	-	.	ID=Os07t0542600-01;Name=Os07t0542600-01;Locus_id=Os07g0542600;Oryzabase Gene Name Synonym(s)=DUF26 kinase gene;Note=Similar to receptor-like protein kinase RK20-1.;Transcript_evidence=AK243295 (DDBJ%2C Best hit);ORF_evidence=NP_001152742.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Gnk2-homologous domain (IPR002902),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J100053G09;Oryzabase=22135;TENOR=Os07t0542600-01;KEGG=Os07t0542600-01
Chr07	irgsp1_rep	five_prime_UTR	21444791	21444823	.	-	.	Parent=Os07t0542600-01
Chr07	irgsp1_rep	CDS	21443993	21444790	.	-	0	Parent=Os07t0542600-01
Chr07	irgsp1_rep	CDS	21443852	21443885	.	-	0	Parent=Os07t0542600-01
Chr07	irgsp1_rep	CDS	21443625	21443752	.	-	2	Parent=Os07t0542600-01
Chr07	irgsp1_rep	CDS	21442101	21442308	.	-	0	Parent=Os07t0542600-01
Chr07	irgsp1_rep	CDS	21441781	21442018	.	-	2	Parent=Os07t0542600-01
Chr07	irgsp1_rep	CDS	21441544	21441700	.	-	1	Parent=Os07t0542600-01
Chr07	irgsp1_rep	CDS	21441185	21441457	.	-	0	Parent=Os07t0542600-01
Chr07	irgsp1_rep	three_prime_UTR	21441037	21441184	.	-	.	Parent=Os07t0542600-01
Chr07	irgsp1_rep	mRNA	21444829	21449098	.	+	.	ID=Os07t0542701-01;Name=Os07t0542701-01;Locus_id=Os07g0542701;Note=Conserved hypothetical protein.;Transcript_evidence=AK288883 (DDBJ%2C Best hit);ORF_evidence=Q6YV95 (UniProt);NIAS_FLcDNA=J090079H22;TENOR=Os07t0542701-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	21444829	21447412	.	+	.	Parent=Os07t0542701-01
Chr07	irgsp1_rep	CDS	21447413	21447625	.	+	0	Parent=Os07t0542701-01
Chr07	irgsp1_rep	three_prime_UTR	21447626	21449098	.	+	.	Parent=Os07t0542701-01
Chr07	irgsp1_rep	mRNA	21457006	21460283	.	+	.	ID=Os07t0542800-00;Name=Os07t0542800-00;Locus_id=Os07g0542800;Note=Similar to H0306B06.7 protein.;Transcript_evidence=AK335220 (DDBJ);ORF_evidence=Q01ID2 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Tetratricopeptide-like helical (IPR011990);TENOR=Os07t0542800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	21457006	21457332	.	+	0	Parent=Os07t0542800-00
Chr07	irgsp1_rep	CDS	21459870	21460283	.	+	0	Parent=Os07t0542800-00
Chr07	irgsp1_rep	mRNA	21465220	21466379	.	+	.	ID=Os07t0542900-00;Name=Os07t0542900-00;Locus_id=Os07g0542900;CGSNL Gene Symbol=UCL22;CGSNL Gene Name=UCLACYANIN-LIKE PROTEIN 22;Oryzabase Gene Symbol Synonym(s)=OsUCL22;Oryzabase Gene Name Synonym(s)=uclacyanin-like protein 22;Note=Similar to blue copper protein.;Transcript_evidence=FP101340 (DDBJ);ORF_evidence=NP_001149787.1 (RefSeq);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);Oryzabase=9771;TENOR=Os07t0542900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	21465220	21465220	.	+	.	Parent=Os07t0542900-00
Chr07	irgsp1_rep	CDS	21465221	21465389	.	+	0	Parent=Os07t0542900-00
Chr07	irgsp1_rep	CDS	21465700	21466127	.	+	2	Parent=Os07t0542900-00
Chr07	irgsp1_rep	three_prime_UTR	21466128	21466379	.	+	.	Parent=Os07t0542900-00
Chr07	irgsp1_rep	mRNA	21466858	21469857	.	-	.	ID=Os07t0543000-01;Name=Os07t0543000-01;Locus_id=Os07g0543000;CGSNL Gene Symbol=BHLH57;CGSNL Gene Name=BASIC HELIX-LOOP-HELIX PROTEIN 57;Oryzabase Gene Symbol Synonym(s)=OsbHLH057%2C bHLH057%2C OsbHLH57%2C bHLH57%2C OsPRI4%2C PRI4;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 057%2C POSITIVE REGULATOR OF IRON HOMEOSTASIS 4;Note=Similar to Helix-loop-helix-like protein (Fragment).;Transcript_evidence=AK058889 (DDBJ%2C Best hit);ORF_evidence=F1DJQ7 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=001-007-D03;Oryzabase=15347;Expression=AK058889;TENOR=Os07t0543000-01;KEGG=Os07t0543000-01
Chr07	irgsp1_rep	five_prime_UTR	21469756	21469857	.	-	.	Parent=Os07t0543000-01
Chr07	irgsp1_rep	CDS	21469562	21469755	.	-	0	Parent=Os07t0543000-01
Chr07	irgsp1_rep	CDS	21468014	21468073	.	-	1	Parent=Os07t0543000-01
Chr07	irgsp1_rep	CDS	21467853	21467930	.	-	1	Parent=Os07t0543000-01
Chr07	irgsp1_rep	CDS	21467595	21467757	.	-	1	Parent=Os07t0543000-01
Chr07	irgsp1_rep	CDS	21467101	21467376	.	-	0	Parent=Os07t0543000-01
Chr07	irgsp1_rep	three_prime_UTR	21466858	21467100	.	-	.	Parent=Os07t0543000-01
Chr07	irgsp1_rep	mRNA	21466866	21469857	.	-	.	ID=Os07t0543000-02;Name=Os07t0543000-02;Locus_id=Os07g0543000;CGSNL Gene Symbol=BHLH57;CGSNL Gene Name=BASIC HELIX-LOOP-HELIX PROTEIN 57;Oryzabase Gene Symbol Synonym(s)=OsbHLH057%2C bHLH057%2C OsbHLH57%2C bHLH57%2C OsPRI4%2C PRI4;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 057%2C POSITIVE REGULATOR OF IRON HOMEOSTASIS 4;Note=Similar to Helix-loop-helix-like protein (Fragment).;Transcript_evidence=AK068361 (DDBJ%2C Best hit);ORF_evidence=F1DJQ7 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J013146F13;Oryzabase=15347;Expression=AK068361;TENOR=Os07t0543000-02;KEGG=Os07t0543000-02
Chr07	irgsp1_rep	five_prime_UTR	21468142	21469857	.	-	.	Parent=Os07t0543000-02
Chr07	irgsp1_rep	CDS	21468014	21468141	.	-	0	Parent=Os07t0543000-02
Chr07	irgsp1_rep	CDS	21467853	21467930	.	-	1	Parent=Os07t0543000-02
Chr07	irgsp1_rep	CDS	21467595	21467757	.	-	1	Parent=Os07t0543000-02
Chr07	irgsp1_rep	CDS	21467101	21467376	.	-	0	Parent=Os07t0543000-02
Chr07	irgsp1_rep	three_prime_UTR	21466866	21467100	.	-	.	Parent=Os07t0543000-02
Chr07	irgsp1_rep	mRNA	21470797	21473327	.	+	.	ID=Os07t0543100-00;Name=Os07t0543100-00;Locus_id=Os07g0543100;CGSNL Gene Symbol=BMY1;CGSNL Gene Name=BETA-AMYLASE 1;Oryzabase Gene Name Synonym(s)=beta-amylase 1;Note=Similar to Beta-amylase (EC 3.2.1.2).;Transcript_evidence=BT063529 (DDBJ);ORF_evidence=B8B797 (UniProt);GO=Biological Process: polysaccharide catabolic process (GO:0000272),Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: beta-amylase activity (GO:0016161),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 14B%2C plant (IPR001371),Glycoside hydrolase%2C family 14 (IPR001554),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 14%2C conserved site (IPR018238);Oryzabase=21592;TENOR=Os07t0543100-00;KEGG=Os07t0543100-00 (EC:3.2.1.2)
Chr07	irgsp1_rep	CDS	21470797	21471270	.	+	0	Parent=Os07t0543100-00
Chr07	irgsp1_rep	CDS	21471354	21471434	.	+	0	Parent=Os07t0543100-00
Chr07	irgsp1_rep	CDS	21471520	21471921	.	+	0	Parent=Os07t0543100-00
Chr07	irgsp1_rep	CDS	21472036	21472200	.	+	0	Parent=Os07t0543100-00
Chr07	irgsp1_rep	CDS	21472308	21473039	.	+	0	Parent=Os07t0543100-00
Chr07	irgsp1_rep	CDS	21473121	21473327	.	+	0	Parent=Os07t0543100-00
Chr07	irgsp1_rep	mRNA	21505640	21506607	.	+	.	ID=Os07t0543300-00;Name=Os07t0543300-00;Locus_id=Os07g0543300;CGSNL Gene Symbol=BMY2;CGSNL Gene Name=BETA-AMYLASE 2;Oryzabase Gene Name Synonym(s)=beta-amylase 2;Note=Similar to Beta-amylase.;Transcript_evidence=CT836064 (DDBJ%2C Best hit);ORF_evidence=A2YMB7 (UniProt);GO=Biological Process: polysaccharide catabolic process (GO:0000272),Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: beta-amylase activity (GO:0016161),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 14B%2C plant (IPR001371),Glycoside hydrolase%2C family 14 (IPR001554),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);Oryzabase=21593;TENOR=Os07t0543300-00;KEGG=Os07t0543300-00
Chr07	irgsp1_rep	five_prime_UTR	21505640	21505640	.	+	.	Parent=Os07t0543300-00
Chr07	irgsp1_rep	CDS	21505641	21505751	.	+	0	Parent=Os07t0543300-00
Chr07	irgsp1_rep	CDS	21505879	21506118	.	+	0	Parent=Os07t0543300-00
Chr07	irgsp1_rep	CDS	21506219	21506356	.	+	0	Parent=Os07t0543300-00
Chr07	irgsp1_rep	three_prime_UTR	21506357	21506607	.	+	.	Parent=Os07t0543300-00
Chr07	irgsp1_rep	mRNA	21513062	21517031	.	+	.	ID=Os07t0543500-00;Name=Os07t0543500-00;Locus_id=Os07g0543500;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=tplb0004l24 (Wheat FLcDNA);ORF_evidence=NP_001059908.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-type fold (IPR016024);TENOR=Os07t0543500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	21513062	21513357	.	+	0	Parent=Os07t0543500-00
Chr07	irgsp1_rep	CDS	21514110	21516363	.	+	1	Parent=Os07t0543500-00
Chr07	irgsp1_rep	CDS	21516571	21517011	.	+	0	Parent=Os07t0543500-00
Chr07	irgsp1_rep	three_prime_UTR	21517012	21517031	.	+	.	Parent=Os07t0543500-00
Chr07	irgsp1_rep	mRNA	21518901	21519967	.	-	.	ID=Os07t0543600-00;Name=Os07t0543600-00;Locus_id=Os07g0543600;Oryzabase Gene Symbol Synonym(s)=OsSTRL8%2C STRL8;Oryzabase Gene Name Synonym(s)=STR-like 8;Note=Six-bladed beta-propeller%2C TolB-like domain containing protein.;Transcript_evidence=BT018847 (DDBJ);ORF_evidence=NP_001150769.1 (RefSeq);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: strictosidine synthase activity (GO:0016844);InterPro=Six-bladed beta-propeller%2C TolB-like (IPR011042),Strictosidine synthase%2C conserved region (IPR018119);Oryzabase=21794;TENOR=Os07t0543600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	21519954	21519967	.	-	.	Parent=Os07t0543600-00
Chr07	irgsp1_rep	CDS	21518901	21519953	.	-	0	Parent=Os07t0543600-00
Chr07	irgsp1_rep	mRNA	21520377	21522053	.	+	.	ID=Os07t0543700-01;Name=Os07t0543700-01;Locus_id=Os07g0543700;Note=Similar to Mov34/MPN/PAD-1 family protein.;Transcript_evidence=AK105710 (DDBJ%2C Best hit);ORF_evidence=Q53RR0 (UniProt);NIAS_FLcDNA=001-201-E09;TENOR=Os07t0543700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	21520377	21520561	.	+	.	Parent=Os07t0543700-01
Chr07	irgsp1_rep	five_prime_UTR	21521014	21521429	.	+	.	Parent=Os07t0543700-01
Chr07	irgsp1_rep	CDS	21521430	21521690	.	+	0	Parent=Os07t0543700-01
Chr07	irgsp1_rep	three_prime_UTR	21521691	21522053	.	+	.	Parent=Os07t0543700-01
Chr07	irgsp1_rep	mRNA	21524545	21528191	.	+	.	ID=Os07t0543800-01;Name=Os07t0543800-01;Locus_id=Os07g0543800;Note=Hypothetical conserved gene.;Transcript_evidence=AK240656 (DDBJ%2C Best hit);ORF_evidence=B9FXR9 (UniProt);NIAS_FLcDNA=J023135I04;TENOR=Os07t0543800-01;KEGG=Os07t0543800-01
Chr07	irgsp1_rep	five_prime_UTR	21524545	21524767	.	+	.	Parent=Os07t0543800-01
Chr07	irgsp1_rep	five_prime_UTR	21525677	21527608	.	+	.	Parent=Os07t0543800-01
Chr07	irgsp1_rep	CDS	21527609	21527992	.	+	0	Parent=Os07t0543800-01
Chr07	irgsp1_rep	three_prime_UTR	21527993	21528191	.	+	.	Parent=Os07t0543800-01
Chr07	irgsp1_rep	mRNA	21574446	21576033	.	+	.	ID=Os07t0544800-01;Name=Os07t0544800-01;Locus_id=Os07g0544800;CGSNL Gene Symbol=PSBQ;CGSNL Gene Name=PHOTOSYSTEM II SUBUNIT;Oryzabase Gene Symbol Synonym(s)=PsbQ%2C OsPsbQ%2C psbQ%2C PsbQ-1;Oryzabase Gene Name Synonym(s)=PSII subunit PsbQ%2C photosystem II subunit PsbQ;Note=Similar to Oxygen-evolving enhancer protein 3-2%2C chloroplast precursor (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit) (Ferredoxin-NADP reductase binding protein) (BP).;Transcript_evidence=AK069170 (DDBJ%2C Best hit),AK099127 (DDBJ%2C Best hit);ORF_evidence=P83646 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: oxygen evolving complex (GO:0009654),Cellular Component: extrinsic to membrane (GO:0019898),Molecular Function: calcium ion binding (GO:0005509);InterPro=Photosystem II PsbQ%2C oxygen evolving complex (IPR008797),PsbQ-like domain (IPR023222);NIAS_FLcDNA=J023004I02,J023045A04;Oryzabase=23346;TENOR=Os07t0544800-01
Chr07	irgsp1_rep	five_prime_UTR	21574446	21574503	.	+	.	Parent=Os07t0544800-01
Chr07	irgsp1_rep	CDS	21574504	21574762	.	+	0	Parent=Os07t0544800-01
Chr07	irgsp1_rep	CDS	21574986	21575281	.	+	2	Parent=Os07t0544800-01
Chr07	irgsp1_rep	CDS	21575686	21575784	.	+	0	Parent=Os07t0544800-01
Chr07	irgsp1_rep	three_prime_UTR	21575785	21576033	.	+	.	Parent=Os07t0544800-01
Chr07	irgsp1_rep	mRNA	21576235	21579330	.	-	.	ID=Os07t0544900-01;Name=Os07t0544900-01;Locus_id=Os07g0544900;CGSNL Gene Symbol=RPL28;CGSNL Gene Name=RIBOSOMAL PROTEIN L28;Oryzabase Gene Symbol Synonym(s)=OsRPL28;Oryzabase Gene Name Synonym(s)=ribosomal protein L28%2C ribosomal protein large subunit 28;Note=Ribosomal protein L28 family protein.;Transcript_evidence=AK070349 (DDBJ%2C Best hit);ORF_evidence=NP_001149701.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L28 (IPR001383);NIAS_FLcDNA=J023054G11;Oryzabase=22200;Expression=AK070349;TENOR=Os07t0544900-01;KEGG=Os07t0544900-01
Chr07	irgsp1_rep	five_prime_UTR	21579200	21579330	.	-	.	Parent=Os07t0544900-01
Chr07	irgsp1_rep	CDS	21579000	21579199	.	-	0	Parent=Os07t0544900-01
Chr07	irgsp1_rep	CDS	21577577	21577991	.	-	1	Parent=Os07t0544900-01
Chr07	irgsp1_rep	three_prime_UTR	21577550	21577576	.	-	.	Parent=Os07t0544900-01
Chr07	irgsp1_rep	three_prime_UTR	21576235	21576582	.	-	.	Parent=Os07t0544900-01
Chr07	irgsp1_rep	mRNA	21582777	21583838	.	-	.	ID=Os07t0545001-00;Name=Os07t0545001-00;Locus_id=Os07g0545001;Note=Hypothetical gene.;Transcript_evidence=CT828124 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os07t0545001-00
Chr07	irgsp1_rep	five_prime_UTR	21583045	21583838	.	-	.	Parent=Os07t0545001-00
Chr07	irgsp1_rep	CDS	21582777	21583044	.	-	0	Parent=Os07t0545001-00
Chr07	irgsp1_rep	mRNA	21582857	21583962	.	+	.	ID=Os07t0545100-01;Name=Os07t0545100-01;Locus_id=Os07g0545100;Note=Protein of unknown function DUF1218 family protein.;Transcript_evidence=AK105372 (DDBJ%2C Best hit);ORF_evidence=A2YMC4 (UniProt);InterPro=Protein of unknown function DUF1218 (IPR009606);NIAS_FLcDNA=001-120-D03;Expression=AK105372;TENOR=Os07t0545100-01;KEGG=Os07t0545100-01
Chr07	irgsp1_rep	five_prime_UTR	21582857	21582970	.	+	.	Parent=Os07t0545100-01
Chr07	irgsp1_rep	CDS	21582971	21583069	.	+	0	Parent=Os07t0545100-01
Chr07	irgsp1_rep	CDS	21583171	21583370	.	+	0	Parent=Os07t0545100-01
Chr07	irgsp1_rep	CDS	21583527	21583728	.	+	1	Parent=Os07t0545100-01
Chr07	irgsp1_rep	three_prime_UTR	21583729	21583962	.	+	.	Parent=Os07t0545100-01
Chr07	irgsp1_rep	mRNA	21589820	21590917	.	+	.	ID=Os07t0545300-01;Name=Os07t0545300-01;Locus_id=Os07g0545300;Note=Similar to Histone H2A.;Transcript_evidence=AK099888 (DDBJ%2C Best hit);ORF_evidence=B4G237 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H2A (IPR002119),Histone core (IPR007125),Histone-fold (IPR009072);NIAS_FLcDNA=J013112I10;TENOR=Os07t0545300-01;KEGG=Os07t0545300-01
Chr07	irgsp1_rep	five_prime_UTR	21589820	21589967	.	+	.	Parent=Os07t0545300-01
Chr07	irgsp1_rep	CDS	21589968	21590156	.	+	0	Parent=Os07t0545300-01
Chr07	irgsp1_rep	CDS	21590433	21590651	.	+	0	Parent=Os07t0545300-01
Chr07	irgsp1_rep	three_prime_UTR	21590652	21590917	.	+	.	Parent=Os07t0545300-01
Chr07	irgsp1_rep	mRNA	21592493	21593557	.	+	.	ID=Os07t0545400-01;Name=Os07t0545400-01;Locus_id=Os07g0545400;Oryzabase Gene Name Synonym(s)=CCAAT transcription factor%2C Histone H2A2;Note=Protein H2A.;Transcript_evidence=AK059228 (DDBJ%2C Best hit);ORF_evidence=C5XAT9 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H2A (IPR002119),Histone core (IPR007125),Histone-fold (IPR009072);NIAS_FLcDNA=001-024-D11;Oryzabase=16182;Expression=AK059228;TENOR=Os07t0545400-01;KEGG=Os07t0545400-01
Chr07	irgsp1_rep	five_prime_UTR	21592493	21592647	.	+	.	Parent=Os07t0545400-01
Chr07	irgsp1_rep	CDS	21592648	21592836	.	+	0	Parent=Os07t0545400-01
Chr07	irgsp1_rep	CDS	21593072	21593290	.	+	0	Parent=Os07t0545400-01
Chr07	irgsp1_rep	three_prime_UTR	21593291	21593557	.	+	.	Parent=Os07t0545400-01
Chr07	irgsp1_rep	mRNA	21593294	21593557	.	+	.	ID=Os07t0545400-02;Name=Os07t0545400-02;Locus_id=Os07g0545400;Oryzabase Gene Name Synonym(s)=CCAAT transcription factor%2C Histone H2A2;Note=Non-protein coding transcript.;Transcript_evidence=AK060704 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-030-G07;Oryzabase=16182;TENOR=Os07t0545400-02
Chr07	irgsp1_rep	exon	21593294	21593557	.	+	.	Parent=Os07t0545400-02
Chr07	irgsp1_rep	mRNA	21594798	21600723	.	-	.	ID=Os07t0545500-01;Name=Os07t0545500-01;Locus_id=Os07g0545500;Oryzabase Gene Symbol Synonym(s)=OsSTA198%2C STA198%2C OsFH11%2C FH11;Oryzabase Gene Name Synonym(s)=formin homology 11%2C forming family protein 11%2C FH2 protein 11%2C FH2 domain protein 11;Note=Similar to VMP4 protein.;Transcript_evidence=AK103512 (DDBJ%2C Best hit);ORF_evidence=Q0D5P3 (UniProt);GO=Biological Process: cellular component organization (GO:0016043),Biological Process: actin cytoskeleton organization (GO:0030036),Molecular Function: actin binding (GO:0003779);InterPro=Actin-binding FH2/DRF autoregulatory (IPR003104),Actin-binding FH2 (IPR015425);NIAS_FLcDNA=J033131F22;Oryzabase=19476;Expression=AK103512;TENOR=Os07t0545500-01;KEGG=Os07t0545500-01
Chr07	irgsp1_rep	five_prime_UTR	21599705	21600723	.	-	.	Parent=Os07t0545500-01
Chr07	irgsp1_rep	CDS	21599549	21599704	.	-	0	Parent=Os07t0545500-01
Chr07	irgsp1_rep	CDS	21597829	21598471	.	-	0	Parent=Os07t0545500-01
Chr07	irgsp1_rep	CDS	21597038	21597752	.	-	2	Parent=Os07t0545500-01
Chr07	irgsp1_rep	CDS	21596756	21596952	.	-	1	Parent=Os07t0545500-01
Chr07	irgsp1_rep	CDS	21596005	21596240	.	-	2	Parent=Os07t0545500-01
Chr07	irgsp1_rep	CDS	21594880	21595722	.	-	0	Parent=Os07t0545500-01
Chr07	irgsp1_rep	three_prime_UTR	21594798	21594879	.	-	.	Parent=Os07t0545500-01
Chr07	irgsp1_rep	mRNA	21595029	21600198	.	-	.	ID=Os07t0545500-02;Name=Os07t0545500-02;Locus_id=Os07g0545500;Oryzabase Gene Symbol Synonym(s)=OsSTA198%2C STA198%2C OsFH11%2C FH11;Oryzabase Gene Name Synonym(s)=formin homology 11%2C forming family protein 11%2C FH2 protein 11%2C FH2 domain protein 11;Note=Similar to cDNA clone:J033131F22%2C full insert sequence.;Transcript_evidence=AK069473 (DDBJ%2C Best hit);ORF_evidence=B7EUS5 (UniProt);GO=Biological Process: cellular component organization (GO:0016043),Biological Process: actin cytoskeleton organization (GO:0030036),Molecular Function: actin binding (GO:0003779);InterPro=Actin-binding FH2/DRF autoregulatory (IPR003104),Actin-binding FH2 (IPR015425);NIAS_FLcDNA=J023020E19;Oryzabase=19476;TENOR=Os07t0545500-02
Chr07	irgsp1_rep	five_prime_UTR	21599705	21600198	.	-	.	Parent=Os07t0545500-02
Chr07	irgsp1_rep	CDS	21599549	21599704	.	-	0	Parent=Os07t0545500-02
Chr07	irgsp1_rep	CDS	21597829	21598471	.	-	0	Parent=Os07t0545500-02
Chr07	irgsp1_rep	CDS	21597038	21597752	.	-	2	Parent=Os07t0545500-02
Chr07	irgsp1_rep	CDS	21596756	21596952	.	-	1	Parent=Os07t0545500-02
Chr07	irgsp1_rep	CDS	21596005	21596240	.	-	2	Parent=Os07t0545500-02
Chr07	irgsp1_rep	CDS	21595029	21595722	.	-	0	Parent=Os07t0545500-02
Chr07	irgsp1_rep	mRNA	21594999	21597402	.	+	.	ID=Os07t0545550-00;Name=Os07t0545550-00;Locus_id=Os07g0545550;Note=Non-protein coding transcript.;Transcript_evidence=EU957140 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0545550-00
Chr07	irgsp1_rep	exon	21594999	21595738	.	+	.	Parent=Os07t0545550-00
Chr07	irgsp1_rep	exon	21596037	21596213	.	+	.	Parent=Os07t0545550-00
Chr07	irgsp1_rep	exon	21597153	21597402	.	+	.	Parent=Os07t0545550-00
Chr07	irgsp1_rep	mRNA	21614976	21619678	.	+	.	ID=Os07t0545800-01;Name=Os07t0545800-01;Locus_id=Os07g0545800;CGSNL Gene Symbol=CIGR1;CGSNL Gene Name=CHITIN INDUSIBLE GIBBERELLIN RESPONSIVE GENE 1;Oryzabase Gene Symbol Synonym(s)=OsCIGR1%2C OsGRAS-34%2C OsGRAS34%2C GRAS-34%2C GRAS34;Oryzabase Gene Name Synonym(s)=Chitin-inducible gibberellin-responsive protein 1%2C Chitin-inducible GA-responsive protein%2C GRAS protein 34;Note=Similar to Chitin-inducible gibberellin-responsive protein.;Transcript_evidence=AK069266 (DDBJ%2C Best hit);ORF_evidence=Q69VG1 (UniProt);InterPro=Transcription factor GRAS (IPR005202);NIAS_FLcDNA=J023012G08;Oryzabase=6713;Expression=AK069266;TENOR=Os07t0545800-01;KEGG=Os07t0545800-01
Chr07	irgsp1_rep	five_prime_UTR	21614976	21615089	.	+	.	Parent=Os07t0545800-01
Chr07	irgsp1_rep	five_prime_UTR	21617632	21617662	.	+	.	Parent=Os07t0545800-01
Chr07	irgsp1_rep	CDS	21617663	21619378	.	+	0	Parent=Os07t0545800-01
Chr07	irgsp1_rep	three_prime_UTR	21619379	21619678	.	+	.	Parent=Os07t0545800-01
Chr07	irgsp1_rep	mRNA	21621442	21624414	.	+	.	ID=Os07t0545900-01;Name=Os07t0545900-01;Locus_id=Os07g0545900;Note=Similar to EMB1417.;Transcript_evidence=AK240778 (DDBJ%2C Best hit);ORF_evidence=NP_001149127.1 (RefSeq);NIAS_FLcDNA=J053074I19;TENOR=Os07t0545900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	21621442	21621507	.	+	.	Parent=Os07t0545900-01
Chr07	irgsp1_rep	CDS	21621508	21621626	.	+	0	Parent=Os07t0545900-01
Chr07	irgsp1_rep	CDS	21622874	21622964	.	+	1	Parent=Os07t0545900-01
Chr07	irgsp1_rep	CDS	21623170	21623313	.	+	0	Parent=Os07t0545900-01
Chr07	irgsp1_rep	CDS	21623428	21623673	.	+	0	Parent=Os07t0545900-01
Chr07	irgsp1_rep	three_prime_UTR	21623674	21624414	.	+	.	Parent=Os07t0545900-01
Chr07	irgsp1_rep	mRNA	21625619	21628785	.	+	.	ID=Os07t0546000-01;Name=Os07t0546000-01;Locus_id=Os07g0546000;RAP-DB Gene Symbol Synonym(s)=IPPI1%2C OsIPPI1;RAP-DB Gene Name Synonym(s)=isopentenyl diphosphate isomerase 1;CGSNL Gene Symbol=IPI;CGSNL Gene Name=ISOPENTENYL DIPHOSPHATE ISOMERASE;Oryzabase Gene Symbol Synonym(s)=OsIPI%2C ipi%2C OsIPPI1%2C IPPI1;Oryzabase Gene Name Synonym(s)=isopentenyl diphosphate isomerase%2C IPP isomerase%2C isopentenyl diphosphate isomerase 1;Note=Isopentenyl diphosphate isomerase%2C Isoprenoid biosynthesis;Transcript_evidence=AK065871,AK061800;ORF_evidence=Q8GVZ0;GO=Biological Process: isoprenoid biosynthetic process (GO:0008299),Molecular Function: isopentenyl-diphosphate delta-isomerase activity (GO:0004452),Molecular Function: hydrolase activity (GO:0016787);InterPro=NUDIX hydrolase-like domain superfamily (IPR015797),Isopentenyl-diphosphate delta-isomerase%2C type 1 (IPR011876),NUDIX hydrolase domain (IPR000086);NIAS_FLcDNA=J013044J20,001-039-H09;Manual Curation=November 6%2C 2019;Literature_PMID=3167906;Oryzabase=20176;TENOR=Os07t0546000-01;Subcellular location=mitochondrion (GO:0005739), peroxisome (GO:0005777), endoplasmic reticulum (GO:0005783)
Chr07	irgsp1_rep	five_prime_UTR	21625619	21625709	.	+	.	Parent=Os07t0546000-01
Chr07	irgsp1_rep	CDS	21625710	21625783	.	+	0	Parent=Os07t0546000-01
Chr07	irgsp1_rep	CDS	21627006	21627061	.	+	1	Parent=Os07t0546000-01
Chr07	irgsp1_rep	CDS	21627159	21627250	.	+	2	Parent=Os07t0546000-01
Chr07	irgsp1_rep	CDS	21627682	21627784	.	+	0	Parent=Os07t0546000-01
Chr07	irgsp1_rep	CDS	21627876	21628013	.	+	2	Parent=Os07t0546000-01
Chr07	irgsp1_rep	CDS	21628233	21628486	.	+	2	Parent=Os07t0546000-01
Chr07	irgsp1_rep	three_prime_UTR	21628487	21628785	.	+	.	Parent=Os07t0546000-01
Chr07	irgsp1_rep	mRNA	21627027	21628545	.	-	.	ID=Os07t0546050-00;Name=Os07t0546050-00;Locus_id=Os07g0546050;Note=Non-protein coding transcript.;Transcript_evidence=BT016337 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0546050-00
Chr07	irgsp1_rep	exon	21628233	21628545	.	-	.	Parent=Os07t0546050-00
Chr07	irgsp1_rep	exon	21627875	21628013	.	-	.	Parent=Os07t0546050-00
Chr07	irgsp1_rep	exon	21627674	21627783	.	-	.	Parent=Os07t0546050-00
Chr07	irgsp1_rep	exon	21627157	21627244	.	-	.	Parent=Os07t0546050-00
Chr07	irgsp1_rep	exon	21627027	21627059	.	-	.	Parent=Os07t0546050-00
Chr07	irgsp1_rep	mRNA	21629371	21633545	.	+	.	ID=Os07t0546100-01;Name=Os07t0546100-01;Locus_id=Os07g0546100;Note=Conserved hypothetical protein.;Transcript_evidence=AK100024 (DDBJ%2C Best hit);ORF_evidence=A2YMD1 (UniProt);NIAS_FLcDNA=J013146D04;Expression=AK100024;TENOR=Os07t0546100-01;KEGG=Os07t0546100-01
Chr07	irgsp1_rep	five_prime_UTR	21629371	21629526	.	+	.	Parent=Os07t0546100-01
Chr07	irgsp1_rep	CDS	21629527	21629621	.	+	0	Parent=Os07t0546100-01
Chr07	irgsp1_rep	CDS	21629719	21629767	.	+	1	Parent=Os07t0546100-01
Chr07	irgsp1_rep	CDS	21629819	21630481	.	+	0	Parent=Os07t0546100-01
Chr07	irgsp1_rep	CDS	21630713	21630906	.	+	0	Parent=Os07t0546100-01
Chr07	irgsp1_rep	CDS	21631833	21631869	.	+	1	Parent=Os07t0546100-01
Chr07	irgsp1_rep	CDS	21632000	21632064	.	+	0	Parent=Os07t0546100-01
Chr07	irgsp1_rep	CDS	21632611	21633103	.	+	1	Parent=Os07t0546100-01
Chr07	irgsp1_rep	three_prime_UTR	21633104	21633545	.	+	.	Parent=Os07t0546100-01
Chr07	irgsp1_rep	mRNA	21630259	21633485	.	+	.	ID=Os07t0546100-02;Name=Os07t0546100-02;Locus_id=Os07g0546100;Note=Hypothetical conserved gene.;Transcript_evidence=AK058282 (DDBJ%2C Best hit);ORF_evidence=A3BKV8 (UniProt);InterPro=Plant specific eukaryotic initiation factor 4B (IPR010433);NIAS_FLcDNA=001-013-D06;Expression=AK058282;TENOR=Os07t0546100-02;KEGG=Os07t0546100-02
Chr07	irgsp1_rep	five_prime_UTR	21630259	21630259	.	+	.	Parent=Os07t0546100-02
Chr07	irgsp1_rep	CDS	21630260	21630481	.	+	0	Parent=Os07t0546100-02
Chr07	irgsp1_rep	CDS	21630713	21630906	.	+	0	Parent=Os07t0546100-02
Chr07	irgsp1_rep	CDS	21631833	21631869	.	+	1	Parent=Os07t0546100-02
Chr07	irgsp1_rep	CDS	21632000	21632064	.	+	0	Parent=Os07t0546100-02
Chr07	irgsp1_rep	CDS	21632611	21633103	.	+	1	Parent=Os07t0546100-02
Chr07	irgsp1_rep	three_prime_UTR	21633104	21633485	.	+	.	Parent=Os07t0546100-02
Chr07	irgsp1_rep	mRNA	21629498	21633448	.	-	.	ID=Os07t0546150-00;Name=Os07t0546150-00;Locus_id=Os07g0546150;Note=Hypothetical protein.;Transcript_evidence=tplb0040e02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0546150-00
Chr07	irgsp1_rep	five_prime_UTR	21632593	21633448	.	-	.	Parent=Os07t0546150-00
Chr07	irgsp1_rep	five_prime_UTR	21631996	21632051	.	-	.	Parent=Os07t0546150-00
Chr07	irgsp1_rep	five_prime_UTR	21630711	21630940	.	-	.	Parent=Os07t0546150-00
Chr07	irgsp1_rep	five_prime_UTR	21630203	21630479	.	-	.	Parent=Os07t0546150-00
Chr07	irgsp1_rep	CDS	21629738	21630202	.	-	0	Parent=Os07t0546150-00
Chr07	irgsp1_rep	CDS	21629498	21629642	.	-	0	Parent=Os07t0546150-00
Chr07	irgsp1_rep	mRNA	21633805	21636606	.	-	.	ID=Os07t0546200-01;Name=Os07t0546200-01;Locus_id=Os07g0546200;Note=Conserved hypothetical protein.;Transcript_evidence=AK067303 (DDBJ%2C Best hit);ORF_evidence=B9FXS3 (UniProt);NIAS_FLcDNA=J013102C16;TENOR=Os07t0546200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	21636536	21636606	.	-	.	Parent=Os07t0546200-01
Chr07	irgsp1_rep	CDS	21636221	21636535	.	-	0	Parent=Os07t0546200-01
Chr07	irgsp1_rep	CDS	21633947	21634105	.	-	0	Parent=Os07t0546200-01
Chr07	irgsp1_rep	three_prime_UTR	21633805	21633946	.	-	.	Parent=Os07t0546200-01
Chr07	irgsp1_rep	mRNA	21654643	21657358	.	+	.	ID=Os07t0546400-01;Name=Os07t0546400-01;Locus_id=Os07g0546400;Note=NPH3 domain containing protein.;Transcript_evidence=AK069172 (DDBJ%2C Best hit);ORF_evidence=A3BKW1 (UniProt);GO=Biological Process: response to light stimulus (GO:0009416),Molecular Function: signal transducer activity (GO:0004871);InterPro=NPH3 (IPR004249);NIAS_FLcDNA=J023004J07;TENOR=Os07t0546400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	21654643	21654740	.	+	.	Parent=Os07t0546400-01
Chr07	irgsp1_rep	five_prime_UTR	21655083	21655084	.	+	.	Parent=Os07t0546400-01
Chr07	irgsp1_rep	CDS	21655085	21656242	.	+	0	Parent=Os07t0546400-01
Chr07	irgsp1_rep	CDS	21656608	21657099	.	+	0	Parent=Os07t0546400-01
Chr07	irgsp1_rep	three_prime_UTR	21657100	21657358	.	+	.	Parent=Os07t0546400-01
Chr07	irgsp1_rep	mRNA	21656594	21657063	.	-	.	ID=Os07t0546501-00;Name=Os07t0546501-00;Locus_id=Os07g0546501;Note=Hypothetical gene.;Transcript_evidence=EU947316 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0546501-00;KEGG=Os07t0546501-00
Chr07	irgsp1_rep	CDS	21656599	21657063	.	-	0	Parent=Os07t0546501-00
Chr07	irgsp1_rep	three_prime_UTR	21656594	21656598	.	-	.	Parent=Os07t0546501-00
Chr07	irgsp1_rep	mRNA	21668226	21671885	.	-	.	ID=Os07t0546600-01;Name=Os07t0546600-01;Locus_id=Os07g0546600;Note=Similar to Translation releasing factor RF-2.;Transcript_evidence=AK065606 (DDBJ%2C Best hit);ORF_evidence=NP_001152654.1 (RefSeq);GO=Biological Process: translational termination (GO:0006415),Cellular Component: cytoplasm (GO:0005737),Molecular Function: translation release factor activity (GO:0003747),Molecular Function: translation release factor activity%2C codon specific (GO:0016149);InterPro=Peptide chain release factor class I/class II (IPR000352),Peptide chain release factor 2 (IPR004374),Peptide chain release factor (IPR005139);NIAS_FLcDNA=J013034A05;Expression=AK065606;TENOR=Os07t0546600-01;KEGG=Os07t0546600-01
Chr07	irgsp1_rep	five_prime_UTR	21671765	21671885	.	-	.	Parent=Os07t0546600-01
Chr07	irgsp1_rep	CDS	21671593	21671764	.	-	0	Parent=Os07t0546600-01
Chr07	irgsp1_rep	CDS	21671249	21671326	.	-	2	Parent=Os07t0546600-01
Chr07	irgsp1_rep	CDS	21670915	21671135	.	-	2	Parent=Os07t0546600-01
Chr07	irgsp1_rep	CDS	21670248	21670451	.	-	0	Parent=Os07t0546600-01
Chr07	irgsp1_rep	CDS	21669518	21669733	.	-	0	Parent=Os07t0546600-01
Chr07	irgsp1_rep	CDS	21669216	21669402	.	-	0	Parent=Os07t0546600-01
Chr07	irgsp1_rep	CDS	21668470	21668774	.	-	2	Parent=Os07t0546600-01
Chr07	irgsp1_rep	three_prime_UTR	21668226	21668469	.	-	.	Parent=Os07t0546600-01
Chr07	irgsp1_rep	mRNA	21668470	21671876	.	+	.	ID=Os07t0546650-00;Name=Os07t0546650-00;Locus_id=Os07g0546650;Note=Non-protein coding transcript.;Transcript_evidence=tplb0033k12 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os07t0546650-00
Chr07	irgsp1_rep	exon	21668470	21668778	.	+	.	Parent=Os07t0546650-00
Chr07	irgsp1_rep	exon	21669220	21669402	.	+	.	Parent=Os07t0546650-00
Chr07	irgsp1_rep	exon	21669518	21669721	.	+	.	Parent=Os07t0546650-00
Chr07	irgsp1_rep	exon	21670237	21670434	.	+	.	Parent=Os07t0546650-00
Chr07	irgsp1_rep	exon	21670896	21671135	.	+	.	Parent=Os07t0546650-00
Chr07	irgsp1_rep	exon	21671249	21671330	.	+	.	Parent=Os07t0546650-00
Chr07	irgsp1_rep	exon	21671604	21671876	.	+	.	Parent=Os07t0546650-00
Chr07	irgsp1_rep	mRNA	21672642	21674132	.	-	.	ID=Os07t0546700-01;Name=Os07t0546700-01;Locus_id=Os07g0546700;Oryzabase Gene Name Synonym(s)=Ribosomal protein L38;Note=Similar to 60S ribosomal protein L38.;Transcript_evidence=AK058262 (DDBJ%2C Best hit);ORF_evidence=B6SIV4 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L38e (IPR002675);NIAS_FLcDNA=001-012-H07;Oryzabase=17681;Expression=AK058262;TENOR=Os07t0546700-01;KEGG=Os07t0546700-01
Chr07	irgsp1_rep	five_prime_UTR	21674077	21674132	.	-	.	Parent=Os07t0546700-01
Chr07	irgsp1_rep	CDS	21674074	21674076	.	-	0	Parent=Os07t0546700-01
Chr07	irgsp1_rep	CDS	21673762	21673945	.	-	0	Parent=Os07t0546700-01
Chr07	irgsp1_rep	CDS	21672866	21672888	.	-	2	Parent=Os07t0546700-01
Chr07	irgsp1_rep	three_prime_UTR	21672642	21672865	.	-	.	Parent=Os07t0546700-01
Chr07	irgsp1_rep	mRNA	21674780	21678262	.	-	.	ID=Os07t0546750-00;Name=Os07t0546750-00;Locus_id=Os07g0546750;Note=Hypothetical conserved gene.;Transcript_evidence=CT837822 (DDBJ%2C Best hit);ORF_evidence=Q8GVY1 (UniProt);GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Putative harbinger transposase-derived nuclease (IPR006912);TENOR=Os07t0546750-00;KEGG=Os07t0546750-00
Chr07	irgsp1_rep	five_prime_UTR	21678051	21678262	.	-	.	Parent=Os07t0546750-00
Chr07	irgsp1_rep	five_prime_UTR	21677876	21678042	.	-	.	Parent=Os07t0546750-00
Chr07	irgsp1_rep	five_prime_UTR	21677378	21677379	.	-	.	Parent=Os07t0546750-00
Chr07	irgsp1_rep	CDS	21676016	21677377	.	-	0	Parent=Os07t0546750-00
Chr07	irgsp1_rep	three_prime_UTR	21675997	21676015	.	-	.	Parent=Os07t0546750-00
Chr07	irgsp1_rep	three_prime_UTR	21675272	21675359	.	-	.	Parent=Os07t0546750-00
Chr07	irgsp1_rep	three_prime_UTR	21674780	21675250	.	-	.	Parent=Os07t0546750-00
Chr07	irgsp1_rep	mRNA	21693856	21694971	.	-	.	ID=Os07t0546800-00;Name=Os07t0546800-00;Locus_id=Os07g0546800;Oryzabase Gene Symbol Synonym(s)=OsFbox378%2C Os_F0217;Oryzabase Gene Name Synonym(s)=F-box protein 378;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=EU956201 (DDBJ);ORF_evidence=Q8GVY0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17153;TENOR=Os07t0546800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	21693856	21694971	.	-	0	Parent=Os07t0546800-00
Chr07	irgsp1_rep	mRNA	21701620	21702732	.	+	.	ID=Os07t0547100-00;Name=Os07t0547100-00;Locus_id=Os07g0547100;Oryzabase Gene Symbol Synonym(s)=OsFbox379%2C Os_F0261;Oryzabase Gene Name Synonym(s)=F-box protein 379;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=EU956201 (DDBJ);ORF_evidence=Q8GVX7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17154;TENOR=Os07t0547100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	21701620	21701925	.	+	0	Parent=Os07t0547100-00
Chr07	irgsp1_rep	CDS	21702217	21702732	.	+	0	Parent=Os07t0547100-00
Chr07	irgsp1_rep	mRNA	21729270	21735715	.	-	.	ID=Os07t0547700-00;Name=Os07t0547700-00;Locus_id=Os07g0547700;Oryzabase Gene Symbol Synonym(s)=OsFbox383%2C Os_F0702;Oryzabase Gene Name Synonym(s)=F-box protein 383;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8GVX0 (UniProt);Oryzabase=17158;TENOR=Os07t0547700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	21735566	21735715	.	-	0	Parent=Os07t0547700-00
Chr07	irgsp1_rep	CDS	21734069	21734262	.	-	0	Parent=Os07t0547700-00
Chr07	irgsp1_rep	CDS	21730937	21731864	.	-	1	Parent=Os07t0547700-00
Chr07	irgsp1_rep	CDS	21730100	21730264	.	-	0	Parent=Os07t0547700-00
Chr07	irgsp1_rep	CDS	21729270	21729569	.	-	0	Parent=Os07t0547700-00
Chr07	irgsp1_rep	mRNA	21747927	21751105	.	-	.	ID=Os07t0548100-00;Name=Os07t0548100-00;Locus_id=Os07g0548100;Oryzabase Gene Symbol Synonym(s)=OsFbox384%2C Os_F0579;Oryzabase Gene Name Synonym(s)=F-box protein 384;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A3BKX2 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);Oryzabase=17159;TENOR=Os07t0548100-00;KEGG=Os07t0548100-00
Chr07	irgsp1_rep	CDS	21749945	21751105	.	-	0	Parent=Os07t0548100-00
Chr07	irgsp1_rep	CDS	21748971	21749153	.	-	0	Parent=Os07t0548100-00
Chr07	irgsp1_rep	CDS	21747927	21748211	.	-	0	Parent=Os07t0548100-00
Chr07	irgsp1_rep	mRNA	21753822	21757186	.	+	.	ID=Os07t0548300-01;Name=Os07t0548300-01;Locus_id=Os07g0548300;Note=Hypothetical conserved gene.;Transcript_evidence=AK288753 (DDBJ%2C Best hit);ORF_evidence=NP_001059927.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J090065M09;TENOR=Os07t0548300-01;KEGG=Os07t0548300-01
Chr07	irgsp1_rep	five_prime_UTR	21753822	21753852	.	+	.	Parent=Os07t0548300-01
Chr07	irgsp1_rep	CDS	21753853	21755502	.	+	0	Parent=Os07t0548300-01
Chr07	irgsp1_rep	CDS	21755861	21756148	.	+	0	Parent=Os07t0548300-01
Chr07	irgsp1_rep	three_prime_UTR	21756149	21756213	.	+	.	Parent=Os07t0548300-01
Chr07	irgsp1_rep	three_prime_UTR	21756502	21756695	.	+	.	Parent=Os07t0548300-01
Chr07	irgsp1_rep	three_prime_UTR	21756792	21757186	.	+	.	Parent=Os07t0548300-01
Chr07	irgsp1_rep	mRNA	21760605	21764014	.	+	.	ID=Os07t0548500-01;Name=Os07t0548500-01;Locus_id=Os07g0548500;Note=Conserved hypothetical protein.;Transcript_evidence=AK109605 (DDBJ%2C Best hit);ORF_evidence=B8B776 (UniProt);NIAS_FLcDNA=002-137-F02;TENOR=Os07t0548500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	21760605	21760639	.	+	.	Parent=Os07t0548500-01
Chr07	irgsp1_rep	CDS	21760640	21761323	.	+	0	Parent=Os07t0548500-01
Chr07	irgsp1_rep	three_prime_UTR	21761324	21761865	.	+	.	Parent=Os07t0548500-01
Chr07	irgsp1_rep	three_prime_UTR	21762868	21763038	.	+	.	Parent=Os07t0548500-01
Chr07	irgsp1_rep	three_prime_UTR	21763459	21764014	.	+	.	Parent=Os07t0548500-01
Chr07	irgsp1_rep	mRNA	21783249	21786536	.	+	.	ID=Os07t0548800-01;Name=Os07t0548800-01;Locus_id=Os07g0548800;Note=Conserved hypothetical protein.;Transcript_evidence=AK120534 (DDBJ%2C Best hit);ORF_evidence=B8B778 (UniProt);NIAS_FLcDNA=J013128J17;TENOR=Os07t0548800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	21783249	21783250	.	+	.	Parent=Os07t0548800-01
Chr07	irgsp1_rep	CDS	21783251	21783924	.	+	0	Parent=Os07t0548800-01
Chr07	irgsp1_rep	CDS	21785668	21785992	.	+	1	Parent=Os07t0548800-01
Chr07	irgsp1_rep	three_prime_UTR	21785993	21786536	.	+	.	Parent=Os07t0548800-01
Chr07	irgsp1_rep	mRNA	21788575	21793862	.	-	.	ID=Os07t0548900-01;Name=Os07t0548900-01;Locus_id=Os07g0548900;Note=Hypothetical conserved gene.;Transcript_evidence=AK241960 (DDBJ%2C Best hit);ORF_evidence=B8B779 (UniProt);InterPro=Proteasome Inhibitor PI31 (IPR021625);NIAS_FLcDNA=J075093E01;TENOR=Os07t0548900-01;KEGG=Os07t0548900-01
Chr07	irgsp1_rep	five_prime_UTR	21793761	21793862	.	-	.	Parent=Os07t0548900-01
Chr07	irgsp1_rep	CDS	21793598	21793760	.	-	0	Parent=Os07t0548900-01
Chr07	irgsp1_rep	CDS	21792290	21792476	.	-	2	Parent=Os07t0548900-01
Chr07	irgsp1_rep	CDS	21791625	21791792	.	-	1	Parent=Os07t0548900-01
Chr07	irgsp1_rep	CDS	21791225	21791260	.	-	1	Parent=Os07t0548900-01
Chr07	irgsp1_rep	CDS	21789723	21789800	.	-	1	Parent=Os07t0548900-01
Chr07	irgsp1_rep	CDS	21789617	21789648	.	-	1	Parent=Os07t0548900-01
Chr07	irgsp1_rep	CDS	21789464	21789524	.	-	2	Parent=Os07t0548900-01
Chr07	irgsp1_rep	CDS	21789298	21789375	.	-	1	Parent=Os07t0548900-01
Chr07	irgsp1_rep	CDS	21788862	21788937	.	-	1	Parent=Os07t0548900-01
Chr07	irgsp1_rep	three_prime_UTR	21788575	21788861	.	-	.	Parent=Os07t0548900-01
Chr07	irgsp1_rep	mRNA	21798283	21798902	.	-	.	ID=Os07t0549100-01;Name=Os07t0549100-01;Locus_id=Os07g0549100;Note=Conserved hypothetical protein.;Transcript_evidence=AK107974 (DDBJ%2C Best hit);ORF_evidence=A2YMF3 (UniProt);NIAS_FLcDNA=002-135-D10;Expression=AK107974;TENOR=Os07t0549100-01;KEGG=Os07t0549100-01
Chr07	irgsp1_rep	five_prime_UTR	21798817	21798902	.	-	.	Parent=Os07t0549100-01
Chr07	irgsp1_rep	CDS	21798451	21798816	.	-	0	Parent=Os07t0549100-01
Chr07	irgsp1_rep	three_prime_UTR	21798283	21798450	.	-	.	Parent=Os07t0549100-01
Chr07	irgsp1_rep	mRNA	21802620	21804898	.	+	.	ID=Os07t0549150-00;Name=Os07t0549150-00;Locus_id=Os07g0549150;Note=Hypothetical gene.;Transcript_evidence=BT018916 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0549150-00
Chr07	irgsp1_rep	five_prime_UTR	21802620	21802871	.	+	.	Parent=Os07t0549150-00
Chr07	irgsp1_rep	five_prime_UTR	21802954	21803230	.	+	.	Parent=Os07t0549150-00
Chr07	irgsp1_rep	CDS	21803231	21803445	.	+	0	Parent=Os07t0549150-00
Chr07	irgsp1_rep	CDS	21804771	21804898	.	+	1	Parent=Os07t0549150-00
Chr07	irgsp1_rep	mRNA	21802731	21805279	.	-	.	ID=Os07t0549200-01;Name=Os07t0549200-01;Locus_id=Os07g0549200;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK109365 (DDBJ%2C Best hit);ORF_evidence=NP_190271.1 (RefSeq);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=006-206-H01;TENOR=Os07t0549200-01
Chr07	irgsp1_rep	five_prime_UTR	21805170	21805279	.	-	.	Parent=Os07t0549200-01
Chr07	irgsp1_rep	CDS	21804771	21805169	.	-	0	Parent=Os07t0549200-01
Chr07	irgsp1_rep	CDS	21803056	21803445	.	-	0	Parent=Os07t0549200-01
Chr07	irgsp1_rep	three_prime_UTR	21802731	21803055	.	-	.	Parent=Os07t0549200-01
Chr07	irgsp1_rep	mRNA	21802733	21805209	.	-	.	ID=Os07t0549200-02;Name=Os07t0549200-02;Locus_id=Os07g0549200;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK073657 (DDBJ%2C Best hit);ORF_evidence=NP_190271.1 (RefSeq);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J033051K19;TENOR=Os07t0549200-02
Chr07	irgsp1_rep	five_prime_UTR	21805170	21805209	.	-	.	Parent=Os07t0549200-02
Chr07	irgsp1_rep	CDS	21804771	21805169	.	-	0	Parent=Os07t0549200-02
Chr07	irgsp1_rep	CDS	21803056	21803445	.	-	0	Parent=Os07t0549200-02
Chr07	irgsp1_rep	three_prime_UTR	21802733	21803055	.	-	.	Parent=Os07t0549200-02
Chr07	irgsp1_rep	mRNA	21805799	21809536	.	-	.	ID=Os07t0549300-00;Name=Os07t0549300-00;Locus_id=Os07g0549300;Note=Conserved hypothetical protein.;Transcript_evidence=AK287859 (DDBJ%2C Secondary hit);ORF_evidence=NP_001176135.1 (RefSeq);TENOR=Os07t0549300-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	21809535	21809536	.	-	.	Parent=Os07t0549300-00
Chr07	irgsp1_rep	CDS	21809312	21809534	.	-	0	Parent=Os07t0549300-00
Chr07	irgsp1_rep	CDS	21808840	21808921	.	-	2	Parent=Os07t0549300-00
Chr07	irgsp1_rep	CDS	21808026	21808206	.	-	1	Parent=Os07t0549300-00
Chr07	irgsp1_rep	three_prime_UTR	21805799	21808025	.	-	.	Parent=Os07t0549300-00
Chr07	irgsp1_rep	mRNA	21814314	21816011	.	+	.	ID=Os07t0549600-01;Name=Os07t0549600-01;Locus_id=Os07g0549600;CGSNL Gene Symbol=UDT1;CGSNL Gene Name=UNDEVELOPED TAPETUM 1;Oryzabase Gene Symbol Synonym(s)=Udt1%2C bHLH164%2C OsUDT1%2C OsbHLH164;Oryzabase Gene Name Synonym(s)=Undeveloped tapetum-1%2C undeveloped Tapetum1%2C undeveloped Tapetum 1%2C undeveloped tapetum 1%2C UDT1 protein%2C basic helix-loop-helix protein 164;Note=Similar to Undeveloped tapetum 1.;Transcript_evidence=AK242516 (DDBJ%2C Best hit);ORF_evidence=Q58GE3 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J080312F02;Oryzabase=6474;TENOR=Os07t0549600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	21814314	21814404	.	+	.	Parent=Os07t0549600-01
Chr07	irgsp1_rep	CDS	21814405	21814510	.	+	0	Parent=Os07t0549600-01
Chr07	irgsp1_rep	CDS	21814735	21814907	.	+	2	Parent=Os07t0549600-01
Chr07	irgsp1_rep	CDS	21815429	21815605	.	+	0	Parent=Os07t0549600-01
Chr07	irgsp1_rep	CDS	21815744	21815821	.	+	0	Parent=Os07t0549600-01
Chr07	irgsp1_rep	three_prime_UTR	21815822	21816011	.	+	.	Parent=Os07t0549600-01
Chr07	irgsp1_rep	mRNA	21816593	21822322	.	+	.	ID=Os07t0549700-01;Name=Os07t0549700-01;Locus_id=Os07g0549700;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK067714 (DDBJ%2C Best hit),AK104331 (DDBJ%2C Best hit);ORF_evidence=B2BA44 (UniProt);GO=Biological Process: ATP hydrolysis coupled proton transport (GO:0015991),Cellular Component: vacuolar proton-transporting V-type ATPase%2C V1 domain (GO:0000221),Molecular Function: binding (GO:0005488),Molecular Function: proton-transporting ATPase activity%2C rotational mechanism (GO:0046961);InterPro=ATPase%2C V1 complex%2C subunit H (IPR004908),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013120K21,001-032-D11;TENOR=Os07t0549700-01
Chr07	irgsp1_rep	five_prime_UTR	21816593	21816682	.	+	.	Parent=Os07t0549700-01
Chr07	irgsp1_rep	five_prime_UTR	21816874	21816896	.	+	.	Parent=Os07t0549700-01
Chr07	irgsp1_rep	CDS	21816897	21816926	.	+	0	Parent=Os07t0549700-01
Chr07	irgsp1_rep	CDS	21818218	21818343	.	+	0	Parent=Os07t0549700-01
Chr07	irgsp1_rep	CDS	21818539	21818641	.	+	0	Parent=Os07t0549700-01
Chr07	irgsp1_rep	CDS	21818725	21818796	.	+	2	Parent=Os07t0549700-01
Chr07	irgsp1_rep	CDS	21819392	21819402	.	+	2	Parent=Os07t0549700-01
Chr07	irgsp1_rep	three_prime_UTR	21819403	21819457	.	+	.	Parent=Os07t0549700-01
Chr07	irgsp1_rep	three_prime_UTR	21819526	21819643	.	+	.	Parent=Os07t0549700-01
Chr07	irgsp1_rep	three_prime_UTR	21819745	21819906	.	+	.	Parent=Os07t0549700-01
Chr07	irgsp1_rep	three_prime_UTR	21820195	21820320	.	+	.	Parent=Os07t0549700-01
Chr07	irgsp1_rep	three_prime_UTR	21820410	21820535	.	+	.	Parent=Os07t0549700-01
Chr07	irgsp1_rep	three_prime_UTR	21821098	21821277	.	+	.	Parent=Os07t0549700-01
Chr07	irgsp1_rep	three_prime_UTR	21821783	21822322	.	+	.	Parent=Os07t0549700-01
Chr07	irgsp1_rep	mRNA	21823012	21825223	.	+	.	ID=Os07t0549800-01;Name=Os07t0549800-01;Locus_id=Os07g0549800;Note=Similar to RGP-3 (Fragment).;Transcript_evidence=AK120874 (DDBJ%2C Best hit);ORF_evidence=NP_001148723.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023026P08;Expression=AK120874;TENOR=Os07t0549800-01;KEGG=Os07t0549800-01
Chr07	irgsp1_rep	five_prime_UTR	21823012	21823147	.	+	.	Parent=Os07t0549800-01
Chr07	irgsp1_rep	CDS	21823148	21823268	.	+	0	Parent=Os07t0549800-01
Chr07	irgsp1_rep	CDS	21824470	21824538	.	+	2	Parent=Os07t0549800-01
Chr07	irgsp1_rep	CDS	21824626	21824732	.	+	2	Parent=Os07t0549800-01
Chr07	irgsp1_rep	CDS	21824889	21824993	.	+	0	Parent=Os07t0549800-01
Chr07	irgsp1_rep	three_prime_UTR	21824994	21825223	.	+	.	Parent=Os07t0549800-01
Chr07	irgsp1_rep	mRNA	21827202	21827703	.	+	.	ID=Os07t0549900-00;Name=Os07t0549900-00;Locus_id=Os07g0549900;Oryzabase Gene Symbol Synonym(s)=H4;Oryzabase Gene Name Synonym(s)=Histone H4;Note=Similar to Histone H4.;Transcript_evidence=EU961929 (DDBJ);ORF_evidence=XP_002310853.1 (RefSeq);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H4 (IPR001951),Histone core (IPR007125),Histone-fold (IPR009072),Histone H4%2C conserved site (IPR019809);Oryzabase=23746;TENOR=Os07t0549900-00;KEGG=Os07t0549900-00
Chr07	irgsp1_rep	five_prime_UTR	21827202	21827288	.	+	.	Parent=Os07t0549900-00
Chr07	irgsp1_rep	CDS	21827289	21827600	.	+	0	Parent=Os07t0549900-00
Chr07	irgsp1_rep	three_prime_UTR	21827601	21827703	.	+	.	Parent=Os07t0549900-00
Chr07	irgsp1_rep	mRNA	21846328	21851114	.	-	.	ID=Os07t0550500-01;Name=Os07t0550500-01;Locus_id=Os07g0550500;Note=Hypothetical conserved gene.;Transcript_evidence=AK287465 (DDBJ%2C Best hit);ORF_evidence=B8B784 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Serine-threonine/tyrosine-protein kinase (IPR001245),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Tyrosine-protein kinase%2C catalytic domain (IPR020635),S-locus%2C receptor kinase (IPR022126);NIAS_FLcDNA=J043021F08;TENOR=Os07t0550500-01;KEGG=Os07t0550500-01
Chr07	irgsp1_rep	five_prime_UTR	21851106	21851114	.	-	.	Parent=Os07t0550500-01
Chr07	irgsp1_rep	CDS	21849776	21851105	.	-	0	Parent=Os07t0550500-01
Chr07	irgsp1_rep	CDS	21848115	21848237	.	-	2	Parent=Os07t0550500-01
Chr07	irgsp1_rep	CDS	21847797	21848002	.	-	2	Parent=Os07t0550500-01
Chr07	irgsp1_rep	CDS	21847479	21847689	.	-	0	Parent=Os07t0550500-01
Chr07	irgsp1_rep	CDS	21847156	21847390	.	-	2	Parent=Os07t0550500-01
Chr07	irgsp1_rep	CDS	21846875	21847061	.	-	1	Parent=Os07t0550500-01
Chr07	irgsp1_rep	three_prime_UTR	21846328	21846874	.	-	.	Parent=Os07t0550500-01
Chr07	irgsp1_rep	mRNA	21854727	21856893	.	+	.	ID=Os07t0550600-01;Name=Os07t0550600-01;Locus_id=Os07g0550600;Note=Transferase family protein.;Transcript_evidence=AK109553 (DDBJ%2C Best hit);ORF_evidence=Q01IV4 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=002-124-C01;Expression=AK109553;TENOR=Os07t0550600-01;KEGG=Os07t0550600-01
Chr07	irgsp1_rep	five_prime_UTR	21854727	21854806	.	+	.	Parent=Os07t0550600-01
Chr07	irgsp1_rep	CDS	21854807	21855250	.	+	0	Parent=Os07t0550600-01
Chr07	irgsp1_rep	CDS	21855795	21856682	.	+	0	Parent=Os07t0550600-01
Chr07	irgsp1_rep	three_prime_UTR	21856683	21856893	.	+	.	Parent=Os07t0550600-01
Chr07	irgsp1_rep	mRNA	21854807	21856344	.	-	.	ID=Os07t0550750-00;Name=Os07t0550750-00;Locus_id=Os07g0550750;Note=Hypothetical protein.;Transcript_evidence=BT035701 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0550750-00
Chr07	irgsp1_rep	five_prime_UTR	21856229	21856344	.	-	.	Parent=Os07t0550750-00
Chr07	irgsp1_rep	CDS	21855749	21856228	.	-	0	Parent=Os07t0550750-00
Chr07	irgsp1_rep	CDS	21855178	21855240	.	-	0	Parent=Os07t0550750-00
Chr07	irgsp1_rep	three_prime_UTR	21854807	21855177	.	-	.	Parent=Os07t0550750-00
Chr07	irgsp1_rep	mRNA	21863109	21868527	.	-	.	ID=Os07t0550900-01;Name=Os07t0550900-01;Locus_id=Os07g0550900;Note=Similar to Receptor-like protein kinase 6.;Transcript_evidence=AK101616 (DDBJ%2C Best hit);ORF_evidence=NP_001105401.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Serine-threonine/tyrosine-protein kinase (IPR001245),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),S-receptor-like serine/threonine-protein kinase (IPR024171);NIAS_FLcDNA=J033052G09;Expression=AK101616;TENOR=Os07t0550900-01;KEGG=Os07t0550900-01
Chr07	irgsp1_rep	five_prime_UTR	21868362	21868527	.	-	.	Parent=Os07t0550900-01
Chr07	irgsp1_rep	CDS	21867389	21868361	.	-	0	Parent=Os07t0550900-01
Chr07	irgsp1_rep	CDS	21866844	21867215	.	-	2	Parent=Os07t0550900-01
Chr07	irgsp1_rep	CDS	21865275	21865385	.	-	2	Parent=Os07t0550900-01
Chr07	irgsp1_rep	CDS	21864915	21865138	.	-	2	Parent=Os07t0550900-01
Chr07	irgsp1_rep	CDS	21864590	21864800	.	-	0	Parent=Os07t0550900-01
Chr07	irgsp1_rep	CDS	21864239	21864476	.	-	2	Parent=Os07t0550900-01
Chr07	irgsp1_rep	CDS	21864002	21864152	.	-	1	Parent=Os07t0550900-01
Chr07	irgsp1_rep	CDS	21863581	21863898	.	-	0	Parent=Os07t0550900-01
Chr07	irgsp1_rep	three_prime_UTR	21863109	21863580	.	-	.	Parent=Os07t0550900-01
Chr07	irgsp1_rep	mRNA	21863581	21868290	.	+	.	ID=Os07t0551100-00;Name=Os07t0551100-00;Locus_id=Os07g0551100;Note=Hypothetical protein.;Transcript_evidence=tplb0048b10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0551100-00
Chr07	irgsp1_rep	five_prime_UTR	21863581	21863900	.	+	.	Parent=Os07t0551100-00
Chr07	irgsp1_rep	five_prime_UTR	21864006	21864154	.	+	.	Parent=Os07t0551100-00
Chr07	irgsp1_rep	five_prime_UTR	21864241	21864298	.	+	.	Parent=Os07t0551100-00
Chr07	irgsp1_rep	CDS	21864299	21864450	.	+	0	Parent=Os07t0551100-00
Chr07	irgsp1_rep	CDS	21864557	21864881	.	+	1	Parent=Os07t0551100-00
Chr07	irgsp1_rep	three_prime_UTR	21864882	21864908	.	+	.	Parent=Os07t0551100-00
Chr07	irgsp1_rep	three_prime_UTR	21865107	21865390	.	+	.	Parent=Os07t0551100-00
Chr07	irgsp1_rep	three_prime_UTR	21866926	21867186	.	+	.	Parent=Os07t0551100-00
Chr07	irgsp1_rep	three_prime_UTR	21867397	21868290	.	+	.	Parent=Os07t0551100-00
Chr07	irgsp1_rep	mRNA	21876891	21883372	.	-	.	ID=Os07t0551300-01;Name=Os07t0551300-01;Locus_id=Os07g0551300;Note=Similar to KI domain interacting kinase 1.;Transcript_evidence=AK102758 (DDBJ%2C Best hit);ORF_evidence=NP_001105401.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Epidermal growth factor-like%2C type 3 (IPR000742),S-locus glycoprotein (IPR000858),Serine-threonine/tyrosine-protein kinase (IPR001245),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033107C10;Expression=AK102758;TENOR=Os07t0551300-01;KEGG=Os07t0551300-01
Chr07	irgsp1_rep	five_prime_UTR	21883231	21883372	.	-	.	Parent=Os07t0551300-01
Chr07	irgsp1_rep	CDS	21882548	21883230	.	-	0	Parent=Os07t0551300-01
Chr07	irgsp1_rep	CDS	21880319	21880629	.	-	1	Parent=Os07t0551300-01
Chr07	irgsp1_rep	CDS	21879392	21879721	.	-	2	Parent=Os07t0551300-01
Chr07	irgsp1_rep	CDS	21879169	21879276	.	-	2	Parent=Os07t0551300-01
Chr07	irgsp1_rep	CDS	21878368	21878588	.	-	2	Parent=Os07t0551300-01
Chr07	irgsp1_rep	CDS	21878048	21878258	.	-	0	Parent=Os07t0551300-01
Chr07	irgsp1_rep	CDS	21877727	21877964	.	-	2	Parent=Os07t0551300-01
Chr07	irgsp1_rep	CDS	21877499	21877649	.	-	1	Parent=Os07t0551300-01
Chr07	irgsp1_rep	CDS	21877097	21877405	.	-	0	Parent=Os07t0551300-01
Chr07	irgsp1_rep	three_prime_UTR	21876891	21877096	.	-	.	Parent=Os07t0551300-01
Chr07	irgsp1_rep	mRNA	21894865	21898610	.	-	.	ID=Os07t0551400-01;Name=Os07t0551400-01;Locus_id=Os07g0551400;Oryzabase Gene Symbol Synonym(s)=OsUSP%2C USP;Oryzabase Gene Name Synonym(s)=universal stress protein domain containing protein;Note=Rossmann-like alpha/beta/alpha sandwich fold domain containing protein.;Transcript_evidence=AK109507 (DDBJ%2C Best hit);ORF_evidence=B6TWE1 (UniProt);GO=Biological Process: response to stress (GO:0006950);InterPro=Universal stress protein A (IPR006015),UspA (IPR006016),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=002-101-E04;Oryzabase=21865;Expression=AK109507;TENOR=Os07t0551400-01;KEGG=Os07t0551400-01
Chr07	irgsp1_rep	five_prime_UTR	21898509	21898610	.	-	.	Parent=Os07t0551400-01
Chr07	irgsp1_rep	CDS	21897710	21898508	.	-	0	Parent=Os07t0551400-01
Chr07	irgsp1_rep	CDS	21895973	21895980	.	-	2	Parent=Os07t0551400-01
Chr07	irgsp1_rep	three_prime_UTR	21895940	21895972	.	-	.	Parent=Os07t0551400-01
Chr07	irgsp1_rep	three_prime_UTR	21894865	21895273	.	-	.	Parent=Os07t0551400-01
Chr07	irgsp1_rep	mRNA	21897237	21898566	.	-	.	ID=Os07t0551400-02;Name=Os07t0551400-02;Locus_id=Os07g0551400;Oryzabase Gene Symbol Synonym(s)=OsUSP%2C USP;Oryzabase Gene Name Synonym(s)=universal stress protein domain containing protein;Note=Similar to USP family protein.;Transcript_evidence=AK060720 (DDBJ%2C Best hit);ORF_evidence=B6TWE1 (UniProt);GO=Biological Process: response to stress (GO:0006950);InterPro=Universal stress protein A (IPR006015),UspA (IPR006016),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=001-031-F04;Oryzabase=21865;Expression=AK060720;TENOR=Os07t0551400-02;KEGG=Os07t0551400-02
Chr07	irgsp1_rep	five_prime_UTR	21898509	21898566	.	-	.	Parent=Os07t0551400-02
Chr07	irgsp1_rep	CDS	21897702	21898508	.	-	0	Parent=Os07t0551400-02
Chr07	irgsp1_rep	three_prime_UTR	21897237	21897701	.	-	.	Parent=Os07t0551400-02
Chr07	irgsp1_rep	mRNA	21895028	21898511	.	+	.	ID=Os07t0551501-00;Name=Os07t0551501-00;Locus_id=Os07g0551501;Note=Hypothetical protein.;Transcript_evidence=BT016476 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0551501-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	21895028	21895290	.	+	.	Parent=Os07t0551501-00
Chr07	irgsp1_rep	five_prime_UTR	21897675	21897731	.	+	.	Parent=Os07t0551501-00
Chr07	irgsp1_rep	CDS	21897732	21898511	.	+	0	Parent=Os07t0551501-00
Chr07	irgsp1_rep	mRNA	21901505	21908493	.	-	.	ID=Os07t0551600-01;Name=Os07t0551600-01;Locus_id=Os07g0551600;CGSNL Gene Symbol=CSLF9;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE F9;Oryzabase Gene Symbol Synonym(s)=OsCslF9%2C OsCSLF9;Note=Similar to Cellulose synthase-like CslF9.;Transcript_evidence=AK242890 (DDBJ%2C Best hit);ORF_evidence=B1P2T7 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150);NIAS_FLcDNA=J090079L19;Oryzabase=18110;TENOR=Os07t0551600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	21908446	21908493	.	-	.	Parent=Os07t0551600-01
Chr07	irgsp1_rep	CDS	21908210	21908445	.	-	0	Parent=Os07t0551600-01
Chr07	irgsp1_rep	CDS	21904700	21905429	.	-	1	Parent=Os07t0551600-01
Chr07	irgsp1_rep	CDS	21903804	21903887	.	-	0	Parent=Os07t0551600-01
Chr07	irgsp1_rep	three_prime_UTR	21901505	21903803	.	-	.	Parent=Os07t0551600-01
Chr07	irgsp1_rep	mRNA	21901507	21905248	.	+	.	ID=Os07t0551650-01;Name=Os07t0551650-01;Locus_id=Os07g0551650;Note=Hypothetical gene.;Transcript_evidence=AK242725 (DDBJ%2C Best hit);ORF_evidence=NP_001061049.1 (RefSeq);NIAS_FLcDNA=J090045M06;Oryzabase=23058;TENOR=Os07t0551650-01;KEGG=Os07t0551650-01
Chr07	irgsp1_rep	five_prime_UTR	21901507	21901744	.	+	.	Parent=Os07t0551650-01
Chr07	irgsp1_rep	CDS	21901745	21903331	.	+	0	Parent=Os07t0551650-01
Chr07	irgsp1_rep	CDS	21904700	21905248	.	+	0	Parent=Os07t0551650-01
Chr07	irgsp1_rep	mRNA	21910226	21915284	.	-	.	ID=Os07t0551700-01;Name=Os07t0551700-01;Locus_id=Os07g0551700;CGSNL Gene Symbol=CSLF8;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE F8;Oryzabase Gene Symbol Synonym(s)=OsCslF8%2C OsCSLF8;Note=Similar to Cellulose synthase (Fragment).;Transcript_evidence=AK067424 (DDBJ%2C Best hit);ORF_evidence=B1P2T6 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150);NIAS_FLcDNA=J013107C16;Oryzabase=18109;Expression=AK067424;TENOR=Os07t0551700-01;KEGG=Os07t0551700-01
Chr07	irgsp1_rep	five_prime_UTR	21915123	21915284	.	-	.	Parent=Os07t0551700-01
Chr07	irgsp1_rep	CDS	21914845	21915122	.	-	0	Parent=Os07t0551700-01
Chr07	irgsp1_rep	CDS	21912179	21912917	.	-	1	Parent=Os07t0551700-01
Chr07	irgsp1_rep	CDS	21910387	21912030	.	-	0	Parent=Os07t0551700-01
Chr07	irgsp1_rep	three_prime_UTR	21910226	21910386	.	-	.	Parent=Os07t0551700-01
Chr07	irgsp1_rep	mRNA	21910483	21915075	.	+	.	ID=Os07t0551750-00;Name=Os07t0551750-00;Locus_id=Os07g0551750;Note=Hypothetical protein.;Transcript_evidence=tplb0046d16 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0551750-00
Chr07	irgsp1_rep	five_prime_UTR	21910483	21912018	.	+	.	Parent=Os07t0551750-00
Chr07	irgsp1_rep	five_prime_UTR	21912170	21912608	.	+	.	Parent=Os07t0551750-00
Chr07	irgsp1_rep	CDS	21912609	21912919	.	+	0	Parent=Os07t0551750-00
Chr07	irgsp1_rep	CDS	21914851	21914872	.	+	1	Parent=Os07t0551750-00
Chr07	irgsp1_rep	three_prime_UTR	21914873	21915075	.	+	.	Parent=Os07t0551750-00
Chr07	irgsp1_rep	mRNA	21952472	21952789	.	+	.	ID=Os07t0552400-00;Name=Os07t0552400-00;Locus_id=Os07g0552400;Note=Similar to Mixed-linked glucan synthase 2.;Transcript_evidence=ab initio prediction;ORF_evidence=Q84S11 (UniProt);TENOR=Os07t0552400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	21952472	21952789	.	+	0	Parent=Os07t0552400-00
Chr07	irgsp1_rep	mRNA	21970365	21973380	.	+	.	ID=Os07t0552800-01;Name=Os07t0552800-01;Locus_id=Os07g0552800;CGSNL Gene Symbol=CSLF2;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE F2;Oryzabase Gene Symbol Synonym(s)=OsCslF2%2C OsCSLF2;Note=Cellulose synthase family protein.;Transcript_evidence=AK100523 (DDBJ%2C Best hit);ORF_evidence=Q84S11 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150);NIAS_FLcDNA=J023100P04;Oryzabase=13902;Expression=AK100523;TENOR=Os07t0552800-01;KEGG=Os07t0552800-01
Chr07	irgsp1_rep	five_prime_UTR	21970365	21970420	.	+	.	Parent=Os07t0552800-01
Chr07	irgsp1_rep	CDS	21970421	21971431	.	+	0	Parent=Os07t0552800-01
Chr07	irgsp1_rep	CDS	21971523	21973181	.	+	0	Parent=Os07t0552800-01
Chr07	irgsp1_rep	three_prime_UTR	21973182	21973380	.	+	.	Parent=Os07t0552800-01
Chr07	irgsp1_rep	mRNA	21970842	21973361	.	+	.	ID=Os07t0552800-02;Name=Os07t0552800-02;Locus_id=Os07g0552800;CGSNL Gene Symbol=CSLF2;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE F2;Oryzabase Gene Symbol Synonym(s)=OsCslF2%2C OsCSLF2;Note=Similar to Mixed-linked glucan synthase 2.;Transcript_evidence=AK066835 (DDBJ%2C Best hit);ORF_evidence=Q84S11 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150);NIAS_FLcDNA=J013087I16;Oryzabase=13902;Expression=AK066835;TENOR=Os07t0552800-02;KEGG=Os07t0552800-02
Chr07	irgsp1_rep	five_prime_UTR	21970842	21970843	.	+	.	Parent=Os07t0552800-02
Chr07	irgsp1_rep	CDS	21970844	21971431	.	+	0	Parent=Os07t0552800-02
Chr07	irgsp1_rep	CDS	21971523	21973181	.	+	0	Parent=Os07t0552800-02
Chr07	irgsp1_rep	three_prime_UTR	21973182	21973361	.	+	.	Parent=Os07t0552800-02
Chr07	irgsp1_rep	mRNA	21989414	21991716	.	+	.	ID=Os07t0553000-00;Name=Os07t0553000-00;Locus_id=Os07g0553000;CGSNL Gene Symbol=CSLF1;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE F1;Oryzabase Gene Symbol Synonym(s)=OsCslF1%2C OsCSLF1;Note=Similar to Mixed-linked glucan synthase 2.;Transcript_evidence=AK066835 (DDBJ%2C Secondary hit);ORF_evidence=Q84S11 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150);Oryzabase=9068;TENOR=Os07t0553000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	21989414	21989415	.	+	.	Parent=Os07t0553000-00
Chr07	irgsp1_rep	CDS	21989416	21990003	.	+	0	Parent=Os07t0553000-00
Chr07	irgsp1_rep	CDS	21990095	21991716	.	+	0	Parent=Os07t0553000-00
Chr07	irgsp1_rep	mRNA	22015802	22019184	.	-	.	ID=Os07t0553400-01;Name=Os07t0553400-01;Locus_id=Os07g0553400;RAP-DB Gene Symbol Synonym(s)=OsCSLF3%2C CSLF3%2C OsCslF3;RAP-DB Gene Name Synonym(s)=cellulose synthase-like F3;CGSNL Gene Symbol=CSLF3;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE F3;Oryzabase Gene Symbol Synonym(s)=OsCslF3%2C OsCSLF3;Note=Cellulose synthase-like protein;Transcript_evidence=AF432504;ORF_evidence=Q6ZF85;GO=Biological Process: cellulose biosynthetic process (GO:0030244),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760),Cellular Component: membrane (GO:0016020);InterPro=Nucleotide-diphospho-sugar transferases (IPR029044),Cellulose synthase (IPR005150);Manual Curation=July 11%2C 2018;Literature_PMID=21167079,11842136;Oryzabase=13903
Chr07	irgsp1_rep	CDS	22018913	22019184	.	-	0	Parent=Os07t0553400-01
Chr07	irgsp1_rep	CDS	22017536	22018277	.	-	1	Parent=Os07t0553400-01
Chr07	irgsp1_rep	CDS	22015802	22017394	.	-	0	Parent=Os07t0553400-01
Chr07	irgsp1_rep	mRNA	22015761	22019154	.	+	.	ID=Os07t0553450-00;Name=Os07t0553450-00;Locus_id=Os07g0553450;Note=Hypothetical protein.;Transcript_evidence=tplb0046d16 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0553450-00
Chr07	irgsp1_rep	five_prime_UTR	22015761	22017382	.	+	.	Parent=Os07t0553450-00
Chr07	irgsp1_rep	five_prime_UTR	22017522	22018106	.	+	.	Parent=Os07t0553450-00
Chr07	irgsp1_rep	CDS	22018107	22018276	.	+	0	Parent=Os07t0553450-00
Chr07	irgsp1_rep	CDS	22018912	22019154	.	+	1	Parent=Os07t0553450-00
Chr07	irgsp1_rep	mRNA	22036311	22039899	.	+	.	ID=Os07t0553600-01;Name=Os07t0553600-01;Locus_id=Os07g0553600;Note=Hypothetical protein.;Transcript_evidence=AK121172 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023081I09;Expression=AK121172;TENOR=Os07t0553600-01;KEGG=Os07t0553600-01
Chr07	irgsp1_rep	five_prime_UTR	22036311	22037654	.	+	.	Parent=Os07t0553600-01
Chr07	irgsp1_rep	five_prime_UTR	22037820	22038000	.	+	.	Parent=Os07t0553600-01
Chr07	irgsp1_rep	CDS	22038001	22038456	.	+	0	Parent=Os07t0553600-01
Chr07	irgsp1_rep	three_prime_UTR	22038457	22039899	.	+	.	Parent=Os07t0553600-01
Chr07	irgsp1_rep	mRNA	22037470	22040184	.	+	.	ID=Os07t0553600-02;Name=Os07t0553600-02;Locus_id=Os07g0553600;Note=Hypothetical protein.;Transcript_evidence=AK064506 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-111-D12;Expression=AK064506;TENOR=Os07t0553600-02;KEGG=Os07t0553600-02
Chr07	irgsp1_rep	five_prime_UTR	22037470	22037654	.	+	.	Parent=Os07t0553600-02
Chr07	irgsp1_rep	five_prime_UTR	22037820	22038000	.	+	.	Parent=Os07t0553600-02
Chr07	irgsp1_rep	CDS	22038001	22038456	.	+	0	Parent=Os07t0553600-02
Chr07	irgsp1_rep	three_prime_UTR	22038457	22039844	.	+	.	Parent=Os07t0553600-02
Chr07	irgsp1_rep	three_prime_UTR	22039962	22040184	.	+	.	Parent=Os07t0553600-02
Chr07	irgsp1_rep	mRNA	22036962	22039724	.	-	.	ID=Os07t0553633-01;Name=Os07t0553633-01;Locus_id=Os07g0553633;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK240758 (DDBJ%2C Best hit);ORF_evidence=NP_001105655.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),S-receptor-like serine/threonine-protein kinase (IPR024171);NIAS_FLcDNA=J053043L20;TENOR=Os07t0553633-01;KEGG=Os07t0553633-01
Chr07	irgsp1_rep	five_prime_UTR	22039635	22039724	.	-	.	Parent=Os07t0553633-01
Chr07	irgsp1_rep	CDS	22037160	22039634	.	-	0	Parent=Os07t0553633-01
Chr07	irgsp1_rep	three_prime_UTR	22036962	22037159	.	-	.	Parent=Os07t0553633-01
Chr07	irgsp1_rep	mRNA	22046017	22048220	.	+	.	ID=Os07t0553700-01;Name=Os07t0553700-01;Locus_id=Os07g0553700;Note=Similar to Light induced protein like.;Transcript_evidence=AK061510 (DDBJ%2C Best hit);ORF_evidence=B6SM59 (UniProt);InterPro=Uncharacterised protein family UPF0041 (IPR005336);NIAS_FLcDNA=006-309-G01;Expression=AK061510;TENOR=Os07t0553700-01;KEGG=Os07t0553700-01
Chr07	irgsp1_rep	five_prime_UTR	22046017	22046123	.	+	.	Parent=Os07t0553700-01
Chr07	irgsp1_rep	five_prime_UTR	22046588	22046661	.	+	.	Parent=Os07t0553700-01
Chr07	irgsp1_rep	CDS	22046662	22046716	.	+	0	Parent=Os07t0553700-01
Chr07	irgsp1_rep	CDS	22047204	22047397	.	+	2	Parent=Os07t0553700-01
Chr07	irgsp1_rep	three_prime_UTR	22047398	22047809	.	+	.	Parent=Os07t0553700-01
Chr07	irgsp1_rep	three_prime_UTR	22047961	22048220	.	+	.	Parent=Os07t0553700-01
Chr07	irgsp1_rep	mRNA	22050977	22052034	.	+	.	ID=Os07t0553800-00;Name=Os07t0553800-00;Locus_id=Os07g0553800;Note=Conserved hypothetical protein.;Transcript_evidence=AK368241 (DDBJ);ORF_evidence=Q6ZF81 (UniProt);TENOR=Os07t0553800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	22050977	22052002	.	+	0	Parent=Os07t0553800-00
Chr07	irgsp1_rep	three_prime_UTR	22052003	22052034	.	+	.	Parent=Os07t0553800-00
Chr07	irgsp1_rep	mRNA	22056455	22059701	.	-	.	ID=Os07t0553900-01;Name=Os07t0553900-01;Locus_id=Os07g0553900;Note=Conserved hypothetical protein.;Transcript_evidence=AK070185 (DDBJ%2C Best hit);ORF_evidence=B9FXU9 (UniProt);NIAS_FLcDNA=J023045K20;TENOR=Os07t0553900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	22059694	22059701	.	-	.	Parent=Os07t0553900-01
Chr07	irgsp1_rep	CDS	22059364	22059693	.	-	0	Parent=Os07t0553900-01
Chr07	irgsp1_rep	CDS	22058537	22058707	.	-	0	Parent=Os07t0553900-01
Chr07	irgsp1_rep	three_prime_UTR	22057172	22058536	.	-	.	Parent=Os07t0553900-01
Chr07	irgsp1_rep	three_prime_UTR	22056455	22057074	.	-	.	Parent=Os07t0553900-01
Chr07	irgsp1_rep	mRNA	22064503	22067677	.	+	.	ID=Os07t0554100-00;Name=Os07t0554100-00;Locus_id=Os07g0554100;Oryzabase Gene Symbol Synonym(s)=OsFbox387%2C Os_F0534;Oryzabase Gene Name Synonym(s)=F-box protein 387;Note=Conserved hypothetical protein.;Transcript_evidence=EU967665 (DDBJ);ORF_evidence=Q6ZF78 (UniProt);Oryzabase=17162;TENOR=Os07t0554100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	22064503	22064631	.	+	.	Parent=Os07t0554100-00
Chr07	irgsp1_rep	CDS	22064632	22064733	.	+	0	Parent=Os07t0554100-00
Chr07	irgsp1_rep	CDS	22066511	22067677	.	+	0	Parent=Os07t0554100-00
Chr07	irgsp1_rep	mRNA	22066412	22067719	.	-	.	ID=Os07t0554150-00;Name=Os07t0554150-00;Locus_id=Os07g0554150;Note=Hypothetical protein.;Transcript_evidence=tplb0057h22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0554150-00
Chr07	irgsp1_rep	five_prime_UTR	22066969	22067719	.	-	.	Parent=Os07t0554150-00
Chr07	irgsp1_rep	CDS	22066412	22066968	.	-	0	Parent=Os07t0554150-00
Chr07	irgsp1_rep	mRNA	22073738	22079495	.	-	.	ID=Os07t0554200-00;Name=Os07t0554200-00;Locus_id=Os07g0554200;Oryzabase Gene Symbol Synonym(s)=OsFbox388%2C Os_F0605;Oryzabase Gene Name Synonym(s)=F-box protein 388;Note=F-box domain%2C Skp2-like domain containing protein.;Transcript_evidence=EU967665 (DDBJ);ORF_evidence=NP_001059953.1 (RefSeq);InterPro=F-box domain%2C Skp2-like (IPR022364);Oryzabase=17163;TENOR=Os07t0554200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	22079451	22079495	.	-	.	Parent=Os07t0554200-00
Chr07	irgsp1_rep	CDS	22079395	22079450	.	-	0	Parent=Os07t0554200-00
Chr07	irgsp1_rep	CDS	22073738	22074974	.	-	1	Parent=Os07t0554200-00
Chr07	irgsp1_rep	mRNA	22077208	22078130	.	-	.	ID=Os07t0554400-00;Name=Os07t0554400-00;Locus_id=Os07g0554400;Note=Conserved hypothetical protein.;Transcript_evidence=BT035451 (DDBJ);ORF_evidence=Q6ZF76 (UniProt);TENOR=Os07t0554400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	22078118	22078130	.	-	.	Parent=Os07t0554400-00
Chr07	irgsp1_rep	CDS	22077827	22078117	.	-	0	Parent=Os07t0554400-00
Chr07	irgsp1_rep	CDS	22077659	22077739	.	-	0	Parent=Os07t0554400-00
Chr07	irgsp1_rep	three_prime_UTR	22077208	22077658	.	-	.	Parent=Os07t0554400-00
Chr07	irgsp1_rep	mRNA	22082577	22083518	.	-	.	ID=Os07t0554450-00;Name=Os07t0554450-00;Locus_id=Os07g0554450;Note=Hypothetical protein.;Transcript_evidence=tplb0032n17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0554450-00
Chr07	irgsp1_rep	five_prime_UTR	22083199	22083518	.	-	.	Parent=Os07t0554450-00
Chr07	irgsp1_rep	CDS	22082935	22083198	.	-	0	Parent=Os07t0554450-00
Chr07	irgsp1_rep	three_prime_UTR	22082577	22082934	.	-	.	Parent=Os07t0554450-00
Chr07	irgsp1_rep	mRNA	22082602	22083848	.	+	.	ID=Os07t0554500-00;Name=Os07t0554500-00;Locus_id=Os07g0554500;Oryzabase Gene Symbol Synonym(s)=OsFbox389%2C Os_F0673;Oryzabase Gene Name Synonym(s)=F-box protein 389;Note=Similar to OSIGBa0107A02.1 protein.;Transcript_evidence=AK332566 (DDBJ);ORF_evidence=Q01MH5 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);Oryzabase=17164;TENOR=Os07t0554500-00
Chr07	irgsp1_rep	five_prime_UTR	22082602	22082603	.	+	.	Parent=Os07t0554500-00
Chr07	irgsp1_rep	CDS	22082604	22083848	.	+	0	Parent=Os07t0554500-00
Chr07	irgsp1_rep	mRNA	22088000	22090410	.	+	.	ID=Os07t0554600-01;Name=Os07t0554600-01;Locus_id=Os07g0554600;Oryzabase Gene Symbol Synonym(s)=OsFbox390%2C Os_F0759;Oryzabase Gene Name Synonym(s)=F-box protein 390;Note=F-box domain%2C Skp2-like domain containing protein.;Transcript_evidence=AK072955 (DDBJ%2C Best hit);ORF_evidence=B8B793 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023146I19;Oryzabase=17165;Expression=AK072955;TENOR=Os07t0554600-01;KEGG=Os07t0554600-01
Chr07	irgsp1_rep	five_prime_UTR	22088000	22088037	.	+	.	Parent=Os07t0554600-01
Chr07	irgsp1_rep	CDS	22088038	22088808	.	+	0	Parent=Os07t0554600-01
Chr07	irgsp1_rep	three_prime_UTR	22088809	22089258	.	+	.	Parent=Os07t0554600-01
Chr07	irgsp1_rep	three_prime_UTR	22090048	22090410	.	+	.	Parent=Os07t0554600-01
Chr07	irgsp1_rep	mRNA	22088053	22089287	.	-	.	ID=Os07t0554650-00;Name=Os07t0554650-00;Locus_id=Os07g0554650;Note=Hypothetical protein.;Transcript_evidence=tplb0057h22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0554650-00
Chr07	irgsp1_rep	five_prime_UTR	22088424	22089287	.	-	.	Parent=Os07t0554650-00
Chr07	irgsp1_rep	CDS	22088053	22088423	.	-	0	Parent=Os07t0554650-00
Chr07	irgsp1_rep	mRNA	22101893	22102840	.	-	.	ID=Os07t0554850-00;Name=Os07t0554850-00;Locus_id=Os07g0554850;Note=Hypothetical protein.;Transcript_evidence=tplb0053b10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0554850-00
Chr07	irgsp1_rep	five_prime_UTR	22102702	22102840	.	-	.	Parent=Os07t0554850-00
Chr07	irgsp1_rep	CDS	22102393	22102701	.	-	0	Parent=Os07t0554850-00
Chr07	irgsp1_rep	three_prime_UTR	22101893	22102392	.	-	.	Parent=Os07t0554850-00
Chr07	irgsp1_rep	mRNA	22101917	22105152	.	+	.	ID=Os07t0554900-01;Name=Os07t0554900-01;Locus_id=Os07g0554900;Oryzabase Gene Symbol Synonym(s)=OsFbox393%2C Os_F0462;Oryzabase Gene Name Synonym(s)=F-box protein 393;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK071294 (DDBJ%2C Best hit),AK069991 (DDBJ%2C Best hit);ORF_evidence=B9FXV3 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023084I19,J023038N21;Oryzabase=17168;TENOR=Os07t0554900-01
Chr07	irgsp1_rep	five_prime_UTR	22101917	22101940	.	+	.	Parent=Os07t0554900-01
Chr07	irgsp1_rep	CDS	22101941	22103227	.	+	0	Parent=Os07t0554900-01
Chr07	irgsp1_rep	three_prime_UTR	22103228	22103231	.	+	.	Parent=Os07t0554900-01
Chr07	irgsp1_rep	three_prime_UTR	22104456	22105152	.	+	.	Parent=Os07t0554900-01
Chr07	irgsp1_rep	mRNA	22107689	22110130	.	+	.	ID=Os07t0555000-01;Name=Os07t0555000-01;Locus_id=Os07g0555000;Oryzabase Gene Symbol Synonym(s)=OsFbox394%2C Os_F0722;Oryzabase Gene Name Synonym(s)=F-box protein 394;Note=F-box domain%2C Skp2-like domain containing protein.;Transcript_evidence=AK105566 (DDBJ%2C Best hit);ORF_evidence=A3BL18 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=001-128-C08;Oryzabase=17169;TENOR=Os07t0555000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	22107689	22107689	.	+	.	Parent=Os07t0555000-01
Chr07	irgsp1_rep	CDS	22107690	22108029	.	+	0	Parent=Os07t0555000-01
Chr07	irgsp1_rep	CDS	22108273	22109000	.	+	2	Parent=Os07t0555000-01
Chr07	irgsp1_rep	three_prime_UTR	22109001	22109004	.	+	.	Parent=Os07t0555000-01
Chr07	irgsp1_rep	three_prime_UTR	22109740	22110130	.	+	.	Parent=Os07t0555000-01
Chr07	irgsp1_rep	mRNA	22107715	22108709	.	-	.	ID=Os07t0555050-00;Name=Os07t0555050-00;Locus_id=Os07g0555050;Note=Hypothetical protein.;Transcript_evidence=tplb0053b10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0555050-00
Chr07	irgsp1_rep	five_prime_UTR	22108208	22108709	.	-	.	Parent=Os07t0555050-00
Chr07	irgsp1_rep	CDS	22107715	22108207	.	-	0	Parent=Os07t0555050-00
Chr07	irgsp1_rep	mRNA	22110826	22113674	.	+	.	ID=Os07t0555100-01;Name=Os07t0555100-01;Locus_id=Os07g0555100;Note=Conserved hypothetical protein.;Transcript_evidence=AK063333 (DDBJ%2C Best hit);ORF_evidence=A2YMJ2 (UniProt);NIAS_FLcDNA=001-114-A04;Expression=AK063333;TENOR=Os07t0555100-01;KEGG=Os07t0555100-01
Chr07	irgsp1_rep	five_prime_UTR	22110826	22110887	.	+	.	Parent=Os07t0555100-01
Chr07	irgsp1_rep	CDS	22110888	22112096	.	+	0	Parent=Os07t0555100-01
Chr07	irgsp1_rep	three_prime_UTR	22112097	22112100	.	+	.	Parent=Os07t0555100-01
Chr07	irgsp1_rep	three_prime_UTR	22113412	22113674	.	+	.	Parent=Os07t0555100-01
Chr07	irgsp1_rep	mRNA	22114961	22123061	.	+	.	ID=Os07t0555200-01;Name=Os07t0555200-01;Locus_id=Os07g0555200;RAP-DB Gene Symbol Synonym(s)=eIF4G%2C tsv1;RAP-DB Gene Name Synonym(s)=eukaryotic translation initiation factor 4 gamma;Oryzabase Gene Symbol Synonym(s)=eIF4Gtsv1%2C tsv1%2C eIF4G;Oryzabase Gene Name Synonym(s)=Rice tungro spherical virus (RTSV) resistance gene%2C RTSV resistance gene%2C eukaryotic translation initiation factor 4G;Note=Translation initiation factor 4G%2C Resistance  to Rice tungro spherical virus;Transcript_evidence=AK069301 (truncated),AK068744 (truncated),AK066706 (truncated),Inferred from literature;ORF_evidence=B9FXV5;GO=Molecular Function: RNA binding (GO:0003723),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo-type fold (IPR016024),MIF4G-like domain superfamily (IPR016021),MIF4G-like%2C type 3 (IPR003890),Initiation factor eIF-4 gamma%2C MA3 (IPR003891);NIAS_FLcDNA=J023014L06 (truncated),J013164M15 (truncated),J013074B22 (truncated);Manual Curation=May 13%2C 2020;Literature_PMID=29604159,19958136;Oryzabase=14278;TENOR=Os07t0555200-01,Os07t0555200-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	22114961	22115088	.	+	.	Parent=Os07t0555200-01
Chr07	irgsp1_rep	five_prime_UTR	22115245	22115291	.	+	.	Parent=Os07t0555200-01
Chr07	irgsp1_rep	CDS	22115292	22115446	.	+	0	Parent=Os07t0555200-01
Chr07	irgsp1_rep	CDS	22115563	22115741	.	+	1	Parent=Os07t0555200-01
Chr07	irgsp1_rep	CDS	22115852	22115995	.	+	2	Parent=Os07t0555200-01
Chr07	irgsp1_rep	CDS	22116088	22116152	.	+	2	Parent=Os07t0555200-01
Chr07	irgsp1_rep	CDS	22116261	22116320	.	+	0	Parent=Os07t0555200-01
Chr07	irgsp1_rep	CDS	22116612	22117958	.	+	0	Parent=Os07t0555200-01
Chr07	irgsp1_rep	CDS	22118042	22118186	.	+	0	Parent=Os07t0555200-01
Chr07	irgsp1_rep	CDS	22118267	22121021	.	+	2	Parent=Os07t0555200-01
Chr07	irgsp1_rep	CDS	22121838	22122032	.	+	1	Parent=Os07t0555200-01
Chr07	irgsp1_rep	CDS	22122119	22122452	.	+	1	Parent=Os07t0555200-01
Chr07	irgsp1_rep	three_prime_UTR	22122453	22122469	.	+	.	Parent=Os07t0555200-01
Chr07	irgsp1_rep	three_prime_UTR	22122587	22123061	.	+	.	Parent=Os07t0555200-01
Chr07	irgsp1_rep	mRNA	22119850	22122991	.	+	.	ID=Os07t0555200-03;Name=Os07t0555200-03;Locus_id=Os07g0555200;Oryzabase Gene Symbol Synonym(s)=eIF4Gtsv1%2C tsv1%2C eIF4G;Oryzabase Gene Name Synonym(s)=Rice tungro spherical virus (RTSV) resistance gene%2C RTSV resistance gene%2C eukaryotic translation initiation factor 4G;Note=Similar to predicted protein.;Transcript_evidence=AK100968 (DDBJ%2C Best hit);ORF_evidence=D4N2J6 (UniProt);GO=Biological Process: RNA metabolic process (GO:0016070),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=MIF4G-like%2C type 3 (IPR003890),Initiation factor eIF-4 gamma%2C MA3 (IPR003891),MIF4-like%2C type 1/2/3 (IPR016021),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023142N07;Oryzabase=14278;Expression=AK100968;TENOR=Os07t0555200-03;KEGG=Os07t0555200-03
Chr07	irgsp1_rep	CDS	22119850	22121021	.	+	0	Parent=Os07t0555200-03
Chr07	irgsp1_rep	CDS	22121838	22122032	.	+	1	Parent=Os07t0555200-03
Chr07	irgsp1_rep	CDS	22122119	22122452	.	+	1	Parent=Os07t0555200-03
Chr07	irgsp1_rep	three_prime_UTR	22122453	22122469	.	+	.	Parent=Os07t0555200-03
Chr07	irgsp1_rep	three_prime_UTR	22122587	22122991	.	+	.	Parent=Os07t0555200-03
Chr07	irgsp1_rep	mRNA	22125123	22129938	.	-	.	ID=Os07t0555250-00;Name=Os07t0555250-00;Locus_id=Os07g0555250;Note=Non-protein coding transcript.;Transcript_evidence=tplb0053b10 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os07t0555250-00
Chr07	irgsp1_rep	exon	22129368	22129938	.	-	.	Parent=Os07t0555250-00
Chr07	irgsp1_rep	exon	22125123	22125920	.	-	.	Parent=Os07t0555250-00
Chr07	irgsp1_rep	mRNA	22125218	22127923	.	+	.	ID=Os07t0555300-01;Name=Os07t0555300-01;Locus_id=Os07g0555300;Note=Conserved hypothetical protein.;Transcript_evidence=AK106624 (DDBJ%2C Best hit);ORF_evidence=A3BL22 (UniProt);NIAS_FLcDNA=002-113-B05;TENOR=Os07t0555300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	22125218	22126381	.	+	0	Parent=Os07t0555300-01
Chr07	irgsp1_rep	three_prime_UTR	22126382	22127923	.	+	.	Parent=Os07t0555300-01
Chr07	irgsp1_rep	mRNA	22125276	22126618	.	+	.	ID=Os07t0555300-02;Name=Os07t0555300-02;Locus_id=Os07g0555300;Note=Conserved hypothetical protein.;Transcript_evidence=AK071161 (DDBJ%2C Best hit);ORF_evidence=A3BL22 (UniProt);NIAS_FLcDNA=J023082J02;TENOR=Os07t0555300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	22125276	22125277	.	+	.	Parent=Os07t0555300-02
Chr07	irgsp1_rep	CDS	22125278	22126381	.	+	0	Parent=Os07t0555300-02
Chr07	irgsp1_rep	three_prime_UTR	22126382	22126618	.	+	.	Parent=Os07t0555300-02
Chr07	irgsp1_rep	mRNA	22128502	22130398	.	+	.	ID=Os07t0555400-01;Name=Os07t0555400-01;Locus_id=Os07g0555400;Note=Conserved hypothetical protein.;Transcript_evidence=AK070977 (DDBJ%2C Best hit);ORF_evidence=B8B7A3 (UniProt);NIAS_FLcDNA=J023072E20;TENOR=Os07t0555400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	22128502	22128775	.	+	.	Parent=Os07t0555400-01
Chr07	irgsp1_rep	CDS	22128776	22129426	.	+	0	Parent=Os07t0555400-01
Chr07	irgsp1_rep	three_prime_UTR	22129427	22130398	.	+	.	Parent=Os07t0555400-01
Chr07	irgsp1_rep	mRNA	22141246	22141737	.	+	.	ID=Os07t0555850-00;Name=Os07t0555850-00;Locus_id=Os07g0555850;Note=Non-protein coding transcript.;Transcript_evidence=EU949024 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0555850-00
Chr07	irgsp1_rep	exon	22141246	22141737	.	+	.	Parent=Os07t0555850-00
Chr07	irgsp1_rep	mRNA	22169522	22171723	.	-	.	ID=Os07t0556000-01;Name=Os07t0556000-01;Locus_id=Os07g0556000;CGSNL Gene Symbol=CYCD6%3B1;CGSNL Gene Name=CYCLIN-D6-1;Oryzabase Gene Symbol Synonym(s)=CycD6%3B1%2C CycD6%3Bos%3B1%2C Orysa%3BCycD6%3B1%2C Orysa%3BCYCD6%3B1%2C OsCYCD6%3B1;Oryzabase Gene Name Synonym(s)=D-type cyclin 6%3B1;Note=Cyclin D domain containing protein.;Transcript_evidence=AK121938 (DDBJ%2C Best hit);ORF_evidence=Q69S43 (UniProt);InterPro=Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763);NIAS_FLcDNA=J033107C14;Oryzabase=13272;Expression=AK121938;TENOR=Os07t0556000-01;KEGG=Os07t0556000-01
Chr07	irgsp1_rep	five_prime_UTR	22171576	22171723	.	-	.	Parent=Os07t0556000-01
Chr07	irgsp1_rep	CDS	22171381	22171575	.	-	0	Parent=Os07t0556000-01
Chr07	irgsp1_rep	CDS	22171178	22171270	.	-	0	Parent=Os07t0556000-01
Chr07	irgsp1_rep	CDS	22170986	22171087	.	-	0	Parent=Os07t0556000-01
Chr07	irgsp1_rep	CDS	22170663	22170870	.	-	0	Parent=Os07t0556000-01
Chr07	irgsp1_rep	CDS	22170442	22170572	.	-	2	Parent=Os07t0556000-01
Chr07	irgsp1_rep	CDS	22169851	22170084	.	-	0	Parent=Os07t0556000-01
Chr07	irgsp1_rep	three_prime_UTR	22169522	22169850	.	-	.	Parent=Os07t0556000-01
Chr07	irgsp1_rep	mRNA	22169531	22171669	.	+	.	ID=Os07t0556066-00;Name=Os07t0556066-00;Locus_id=Os07g0556066;Note=Hypothetical protein.;Transcript_evidence=tplb0041j07 (Wheat FLcDNA);ORF_evidence=GeneMark;TENOR=Os07t0556066-00
Chr07	irgsp1_rep	five_prime_UTR	22169531	22169893	.	+	.	Parent=Os07t0556066-00
Chr07	irgsp1_rep	CDS	22169894	22170097	.	+	0	Parent=Os07t0556066-00
Chr07	irgsp1_rep	CDS	22170150	22170158	.	+	0	Parent=Os07t0556066-00
Chr07	irgsp1_rep	three_prime_UTR	22170159	22170597	.	+	.	Parent=Os07t0556066-00
Chr07	irgsp1_rep	three_prime_UTR	22170685	22170870	.	+	.	Parent=Os07t0556066-00
Chr07	irgsp1_rep	three_prime_UTR	22170986	22171088	.	+	.	Parent=Os07t0556066-00
Chr07	irgsp1_rep	three_prime_UTR	22171179	22171258	.	+	.	Parent=Os07t0556066-00
Chr07	irgsp1_rep	three_prime_UTR	22171365	22171669	.	+	.	Parent=Os07t0556066-00
Chr07	irgsp1_rep	mRNA	22184407	22186890	.	+	.	ID=Os07t0556200-01;Name=Os07t0556200-01;Locus_id=Os07g0556200;Oryzabase Gene Symbol Synonym(s)=PetC%2C OsPETC;Oryzabase Gene Name Synonym(s)=Rieske Fe-S precursor protein;Note=Rieske [2Fe-2S] region domain containing protein.;Transcript_evidence=AK071634 (DDBJ%2C Best hit);ORF_evidence=A2YMJ8 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: membrane (GO:0016020),Cellular Component: thylakoid membrane (GO:0042651),Molecular Function: ubiquinol-cytoChrome-c reductase activity (GO:0008121),Molecular Function: plastoquinol-plastocyanin reductase activity (GO:0009496),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on diphenols and related substances as donors (GO:0016679),Molecular Function: electron transporter%2C transferring electrons within cytoChrome b6/f complex of photosystem II activity (GO:0045158),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=Rieske iron-sulphur protein%2C C-terminal (IPR005805),Rieske iron-sulphur protein (IPR014349),CytoChrome b6-f complex Fe-S subunit (IPR014909),Rieske [2Fe-2S] iron-sulphur domain (IPR017941),CytoChrome b6-f complex iron-sulfur subunit (IPR023960);NIAS_FLcDNA=J023100K03;Oryzabase=18701;Expression=AK071634;TENOR=Os07t0556200-01;KEGG=Os07t0556200-01 (EC:1.10.99.1)
Chr07	irgsp1_rep	five_prime_UTR	22184407	22184458	.	+	.	Parent=Os07t0556200-01
Chr07	irgsp1_rep	CDS	22184459	22184500	.	+	0	Parent=Os07t0556200-01
Chr07	irgsp1_rep	CDS	22185517	22185749	.	+	0	Parent=Os07t0556200-01
Chr07	irgsp1_rep	CDS	22185847	22185964	.	+	1	Parent=Os07t0556200-01
Chr07	irgsp1_rep	CDS	22186053	22186235	.	+	0	Parent=Os07t0556200-01
Chr07	irgsp1_rep	CDS	22186438	22186539	.	+	0	Parent=Os07t0556200-01
Chr07	irgsp1_rep	three_prime_UTR	22186540	22186890	.	+	.	Parent=Os07t0556200-01
Chr07	irgsp1_rep	mRNA	22187436	22189107	.	-	.	ID=Os07t0556300-01;Name=Os07t0556300-01;Locus_id=Os07g0556300;Note=Octicosapeptide/Phox/Bem1p domain containing protein.;Transcript_evidence=AK109557 (DDBJ%2C Best hit);ORF_evidence=B6TY49 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Phox/Bem1p (IPR000270);NIAS_FLcDNA=002-125-D08;Expression=AK109557;TENOR=Os07t0556300-01;KEGG=Os07t0556300-01
Chr07	irgsp1_rep	CDS	22188948	22189107	.	-	0	Parent=Os07t0556300-01
Chr07	irgsp1_rep	CDS	22187794	22188905	.	-	2	Parent=Os07t0556300-01
Chr07	irgsp1_rep	three_prime_UTR	22187436	22187793	.	-	.	Parent=Os07t0556300-01
Chr07	irgsp1_rep	mRNA	22197089	22203636	.	-	.	ID=Os07t0556500-01;Name=Os07t0556500-01;Locus_id=Os07g0556500;Note=Hypothetical conserved gene.;Transcript_evidence=AK287643 (DDBJ%2C Best hit);ORF_evidence=B8B7A5 (UniProt);NIAS_FLcDNA=J065079F22;TENOR=Os07t0556500-01;KEGG=Os07t0556500-01
Chr07	irgsp1_rep	five_prime_UTR	22203599	22203636	.	-	.	Parent=Os07t0556500-01
Chr07	irgsp1_rep	CDS	22203438	22203598	.	-	0	Parent=Os07t0556500-01
Chr07	irgsp1_rep	CDS	22203170	22203257	.	-	1	Parent=Os07t0556500-01
Chr07	irgsp1_rep	three_prime_UTR	22203000	22203169	.	-	.	Parent=Os07t0556500-01
Chr07	irgsp1_rep	three_prime_UTR	22198529	22198612	.	-	.	Parent=Os07t0556500-01
Chr07	irgsp1_rep	three_prime_UTR	22197686	22197994	.	-	.	Parent=Os07t0556500-01
Chr07	irgsp1_rep	three_prime_UTR	22197089	22197568	.	-	.	Parent=Os07t0556500-01
Chr07	irgsp1_rep	mRNA	22222300	22223336	.	-	.	ID=Os07t0556800-01;Name=Os07t0556800-01;Locus_id=Os07g0556800;RAP-DB Gene Symbol Synonym(s)=OSRIP18;RAP-DB Gene Name Synonym(s)=Ribosome-inactivating protein gene 18;Note=Ribosome-inactivating protein%2C Drought and salt tolerance;Transcript_evidence=AK107959;ORF_evidence=Q69S32;GO=Biological Process: negative regulation of translation (GO:0017148),Molecular Function: rRNA N-glycosylase activity (GO:0030598);InterPro=Ribosome-inactivating protein superfamily (IPR036041),Ribosome-inactivating protein%2C subdomain 1 (IPR016138),Ribosome-inactivating protein (IPR001574);NIAS_FLcDNA=002-135-C07;Manual Curation=August 27%2C 2020;Literature_PMID=22038450;Expression=AK107959;TENOR=Os07t0556800-01;KEGG=Os07t0556800-01
Chr07	irgsp1_rep	five_prime_UTR	22223281	22223336	.	-	.	Parent=Os07t0556800-01
Chr07	irgsp1_rep	CDS	22222384	22223280	.	-	0	Parent=Os07t0556800-01
Chr07	irgsp1_rep	three_prime_UTR	22222300	22222383	.	-	.	Parent=Os07t0556800-01
Chr07	irgsp1_rep	mRNA	22231027	22234551	.	-	.	ID=Os07t0557100-01;Name=Os07t0557100-01;Locus_id=Os07g0557100;Note=Delayed-early response protein/equilibrative nucleoside transporter family protein.;Transcript_evidence=AK102045 (DDBJ%2C Best hit),AK058524 (DDBJ%2C Best hit);ORF_evidence=NP_001151494.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: nucleoside transmembrane transporter activity (GO:0005337);InterPro=Delayed-early response protein/equilibrative nucleoside transporter (IPR002259);NIAS_FLcDNA=J033081M13,001-016-H11;Expression=AK102045;TENOR=Os07t0557100-01;KEGG=Os07t0557100-01
Chr07	irgsp1_rep	five_prime_UTR	22234441	22234551	.	-	.	Parent=Os07t0557100-01
Chr07	irgsp1_rep	five_prime_UTR	22233688	22233737	.	-	.	Parent=Os07t0557100-01
Chr07	irgsp1_rep	CDS	22233646	22233687	.	-	0	Parent=Os07t0557100-01
Chr07	irgsp1_rep	CDS	22233434	22233538	.	-	0	Parent=Os07t0557100-01
Chr07	irgsp1_rep	CDS	22232879	22233034	.	-	0	Parent=Os07t0557100-01
Chr07	irgsp1_rep	CDS	22232657	22232800	.	-	0	Parent=Os07t0557100-01
Chr07	irgsp1_rep	CDS	22232444	22232549	.	-	0	Parent=Os07t0557100-01
Chr07	irgsp1_rep	CDS	22232137	22232312	.	-	2	Parent=Os07t0557100-01
Chr07	irgsp1_rep	CDS	22231889	22232049	.	-	0	Parent=Os07t0557100-01
Chr07	irgsp1_rep	CDS	22231496	22231755	.	-	1	Parent=Os07t0557100-01
Chr07	irgsp1_rep	CDS	22231290	22231396	.	-	2	Parent=Os07t0557100-01
Chr07	irgsp1_rep	three_prime_UTR	22231027	22231289	.	-	.	Parent=Os07t0557100-01
Chr07	irgsp1_rep	mRNA	22236821	22240319	.	-	.	ID=Os07t0557200-01;Name=Os07t0557200-01;Locus_id=Os07g0557200;Note=Delayed-early response protein/equilibrative nucleoside transporter family protein.;Transcript_evidence=AK101098 (DDBJ%2C Best hit);ORF_evidence=XP_002325685.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: nucleoside transmembrane transporter activity (GO:0005337);InterPro=Delayed-early response protein/equilibrative nucleoside transporter (IPR002259);NIAS_FLcDNA=J033024P16;Expression=AK101098;TENOR=Os07t0557200-01;KEGG=Os07t0557200-01
Chr07	irgsp1_rep	five_prime_UTR	22240127	22240319	.	-	.	Parent=Os07t0557200-01
Chr07	irgsp1_rep	five_prime_UTR	22239920	22240022	.	-	.	Parent=Os07t0557200-01
Chr07	irgsp1_rep	five_prime_UTR	22239767	22239849	.	-	.	Parent=Os07t0557200-01
Chr07	irgsp1_rep	five_prime_UTR	22239069	22239694	.	-	.	Parent=Os07t0557200-01
Chr07	irgsp1_rep	CDS	22239027	22239068	.	-	0	Parent=Os07t0557200-01
Chr07	irgsp1_rep	CDS	22238831	22238935	.	-	0	Parent=Os07t0557200-01
Chr07	irgsp1_rep	CDS	22238565	22238720	.	-	0	Parent=Os07t0557200-01
Chr07	irgsp1_rep	CDS	22238336	22238479	.	-	0	Parent=Os07t0557200-01
Chr07	irgsp1_rep	CDS	22238141	22238246	.	-	0	Parent=Os07t0557200-01
Chr07	irgsp1_rep	CDS	22237887	22238062	.	-	2	Parent=Os07t0557200-01
Chr07	irgsp1_rep	CDS	22237637	22237797	.	-	0	Parent=Os07t0557200-01
Chr07	irgsp1_rep	CDS	22237285	22237543	.	-	1	Parent=Os07t0557200-01
Chr07	irgsp1_rep	CDS	22237054	22237161	.	-	0	Parent=Os07t0557200-01
Chr07	irgsp1_rep	three_prime_UTR	22236821	22237053	.	-	.	Parent=Os07t0557200-01
Chr07	irgsp1_rep	mRNA	22243925	22246490	.	-	.	ID=Os07t0557400-01;Name=Os07t0557400-01;Locus_id=Os07g0557400;Note=Delayed-early response protein/equilibrative nucleoside transporter family protein.;Transcript_evidence=AK065096 (DDBJ%2C Best hit);ORF_evidence=XP_002325685.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: nucleoside transmembrane transporter activity (GO:0005337);InterPro=Delayed-early response protein/equilibrative nucleoside transporter (IPR002259);NIAS_FLcDNA=J013001M14;Expression=AK065096;TENOR=Os07t0557400-01;KEGG=Os07t0557400-01
Chr07	irgsp1_rep	five_prime_UTR	22246371	22246490	.	-	.	Parent=Os07t0557400-01
Chr07	irgsp1_rep	CDS	22246338	22246370	.	-	0	Parent=Os07t0557400-01
Chr07	irgsp1_rep	CDS	22246062	22246124	.	-	0	Parent=Os07t0557400-01
Chr07	irgsp1_rep	CDS	22245853	22245957	.	-	0	Parent=Os07t0557400-01
Chr07	irgsp1_rep	CDS	22245603	22245758	.	-	0	Parent=Os07t0557400-01
Chr07	irgsp1_rep	CDS	22245376	22245519	.	-	0	Parent=Os07t0557400-01
Chr07	irgsp1_rep	CDS	22245144	22245249	.	-	0	Parent=Os07t0557400-01
Chr07	irgsp1_rep	CDS	22244824	22245002	.	-	2	Parent=Os07t0557400-01
Chr07	irgsp1_rep	CDS	22244700	22244744	.	-	0	Parent=Os07t0557400-01
Chr07	irgsp1_rep	three_prime_UTR	22244584	22244699	.	-	.	Parent=Os07t0557400-01
Chr07	irgsp1_rep	three_prime_UTR	22244231	22244489	.	-	.	Parent=Os07t0557400-01
Chr07	irgsp1_rep	three_prime_UTR	22243925	22244154	.	-	.	Parent=Os07t0557400-01
Chr07	irgsp1_rep	mRNA	22247657	22252832	.	+	.	ID=Os07t0557500-01;Name=Os07t0557500-01;Locus_id=Os07g0557500;Note=WRC domain containing protein.;Transcript_evidence=AK101830 (DDBJ%2C Best hit);ORF_evidence=B8B7J0 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),WRC (IPR014977);NIAS_FLcDNA=J033068I24;Expression=AK101830;TENOR=Os07t0557500-01;KEGG=Os07t0557500-01
Chr07	irgsp1_rep	five_prime_UTR	22247657	22247750	.	+	.	Parent=Os07t0557500-01
Chr07	irgsp1_rep	CDS	22247751	22249013	.	+	0	Parent=Os07t0557500-01
Chr07	irgsp1_rep	CDS	22249113	22249249	.	+	0	Parent=Os07t0557500-01
Chr07	irgsp1_rep	CDS	22251110	22251218	.	+	1	Parent=Os07t0557500-01
Chr07	irgsp1_rep	CDS	22251318	22251444	.	+	0	Parent=Os07t0557500-01
Chr07	irgsp1_rep	CDS	22251531	22251591	.	+	2	Parent=Os07t0557500-01
Chr07	irgsp1_rep	CDS	22252086	22252470	.	+	1	Parent=Os07t0557500-01
Chr07	irgsp1_rep	three_prime_UTR	22252471	22252832	.	+	.	Parent=Os07t0557500-01
Chr07	irgsp1_rep	mRNA	22248933	22252803	.	+	.	ID=Os07t0557500-02;Name=Os07t0557500-02;Locus_id=Os07g0557500;Note=Hypothetical conserved gene.;Transcript_evidence=AK067121 (DDBJ%2C Best hit);ORF_evidence=B8B7J0 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841);NIAS_FLcDNA=J013096J16;Expression=AK067121;TENOR=Os07t0557500-02;KEGG=Os07t0557500-02
Chr07	irgsp1_rep	CDS	22248933	22249013	.	+	0	Parent=Os07t0557500-02
Chr07	irgsp1_rep	CDS	22249113	22249249	.	+	0	Parent=Os07t0557500-02
Chr07	irgsp1_rep	CDS	22251110	22251218	.	+	1	Parent=Os07t0557500-02
Chr07	irgsp1_rep	CDS	22251318	22251444	.	+	0	Parent=Os07t0557500-02
Chr07	irgsp1_rep	CDS	22251531	22251591	.	+	2	Parent=Os07t0557500-02
Chr07	irgsp1_rep	CDS	22252086	22252470	.	+	1	Parent=Os07t0557500-02
Chr07	irgsp1_rep	three_prime_UTR	22252471	22252803	.	+	.	Parent=Os07t0557500-02
Chr07	irgsp1_rep	mRNA	22256277	22258489	.	+	.	ID=Os07t0557601-00;Name=Os07t0557601-00;Locus_id=Os07g0557601;Note=Hypothetical gene.;Transcript_evidence=EU972097 (DDBJ);ORF_evidence=longestORF;Oryzabase=22059;TENOR=Os07t0557601-00;KEGG=Os07t0557601-00
Chr07	irgsp1_rep	five_prime_UTR	22256277	22256277	.	+	.	Parent=Os07t0557601-00
Chr07	irgsp1_rep	CDS	22256278	22256671	.	+	0	Parent=Os07t0557601-00
Chr07	irgsp1_rep	CDS	22257802	22257857	.	+	2	Parent=Os07t0557601-00
Chr07	irgsp1_rep	three_prime_UTR	22257858	22258489	.	+	.	Parent=Os07t0557601-00
Chr07	irgsp1_rep	mRNA	22256278	22258542	.	-	.	ID=Os07t0557700-00;Name=Os07t0557700-00;Locus_id=Os07g0557700;Note=Conserved hypothetical protein.;Transcript_evidence=EU966119 (DDBJ);ORF_evidence=NP_001059970.1 (RefSeq);Oryzabase=22060;TENOR=Os07t0557700-00;KEGG=Os07t0557700-00
Chr07	irgsp1_rep	five_prime_UTR	22258454	22258542	.	-	.	Parent=Os07t0557700-00
Chr07	irgsp1_rep	CDS	22257818	22258453	.	-	0	Parent=Os07t0557700-00
Chr07	irgsp1_rep	CDS	22256278	22256649	.	-	0	Parent=Os07t0557700-00
Chr07	irgsp1_rep	mRNA	22268266	22273616	.	-	.	ID=Os07t0558000-01;Name=Os07t0558000-01;Locus_id=Os07g0558000;Note=ABC-1 domain containing protein.;Transcript_evidence=AK069272 (DDBJ%2C Best hit),AK101867 (DDBJ%2C Best hit);ORF_evidence=Q01JL8 (UniProt);GO=Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=ABC-1 (IPR004147),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J023012H13,J033070D21;Expression=AK069272;TENOR=Os07t0558000-01;KEGG=Os07t0558000-01
Chr07	irgsp1_rep	five_prime_UTR	22273303	22273616	.	-	.	Parent=Os07t0558000-01
Chr07	irgsp1_rep	CDS	22273274	22273302	.	-	0	Parent=Os07t0558000-01
Chr07	irgsp1_rep	CDS	22271372	22272686	.	-	1	Parent=Os07t0558000-01
Chr07	irgsp1_rep	CDS	22270890	22271159	.	-	0	Parent=Os07t0558000-01
Chr07	irgsp1_rep	CDS	22269630	22269785	.	-	0	Parent=Os07t0558000-01
Chr07	irgsp1_rep	CDS	22269267	22269368	.	-	0	Parent=Os07t0558000-01
Chr07	irgsp1_rep	three_prime_UTR	22269227	22269266	.	-	.	Parent=Os07t0558000-01
Chr07	irgsp1_rep	three_prime_UTR	22268266	22268599	.	-	.	Parent=Os07t0558000-01
Chr07	irgsp1_rep	mRNA	22293736	22295309	.	-	.	ID=Os07t0558100-00;Name=Os07t0558100-00;Locus_id=Os07g0558100;Oryzabase Gene Symbol Synonym(s)=OsMyb7;Oryzabase Gene Name Synonym(s)=myb transcription factor 7%2C transcription factor MYB7;Note=Similar to Myb-related transcription factor LBM1.;Transcript_evidence=Y11415 (DDBJ%2C Best hit);ORF_evidence=D9ZJ64 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);Oryzabase=10253;Expression=Y11415;TENOR=Os07t0558100-00;KEGG=Os07t0558100-00
Chr07	irgsp1_rep	five_prime_UTR	22295195	22295309	.	-	.	Parent=Os07t0558100-00
Chr07	irgsp1_rep	CDS	22295062	22295194	.	-	0	Parent=Os07t0558100-00
Chr07	irgsp1_rep	CDS	22294817	22294946	.	-	2	Parent=Os07t0558100-00
Chr07	irgsp1_rep	CDS	22293845	22294688	.	-	1	Parent=Os07t0558100-00
Chr07	irgsp1_rep	three_prime_UTR	22293736	22293844	.	-	.	Parent=Os07t0558100-00
Chr07	irgsp1_rep	mRNA	22294324	22294693	.	+	.	ID=Os07t0558150-00;Name=Os07t0558150-00;Locus_id=Os07g0558150;Note=Hypothetical protein.;Transcript_evidence=EU971393 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0558150-00
Chr07	irgsp1_rep	five_prime_UTR	22294324	22294324	.	+	.	Parent=Os07t0558150-00
Chr07	irgsp1_rep	CDS	22294325	22294684	.	+	0	Parent=Os07t0558150-00
Chr07	irgsp1_rep	three_prime_UTR	22294685	22294693	.	+	.	Parent=Os07t0558150-00
Chr07	irgsp1_rep	mRNA	22304492	22308676	.	-	.	ID=Os07t0558200-01;Name=Os07t0558200-01;Locus_id=Os07g0558200;Note=Inositol monophosphatase family protein.;Transcript_evidence=AK065243 (DDBJ%2C Best hit);ORF_evidence=XP_002872735.1 (RefSeq);GO=Molecular Function: inositol or phosphatidylinositol phosphatase activity (GO:0004437);InterPro=Inositol monophosphatase (IPR000760);NIAS_FLcDNA=J013002I13;Expression=AK065243;TENOR=Os07t0558200-01;KEGG=Os07t0558200-01
Chr07	irgsp1_rep	five_prime_UTR	22308619	22308676	.	-	.	Parent=Os07t0558200-01
Chr07	irgsp1_rep	CDS	22308509	22308618	.	-	0	Parent=Os07t0558200-01
Chr07	irgsp1_rep	CDS	22308271	22308403	.	-	1	Parent=Os07t0558200-01
Chr07	irgsp1_rep	CDS	22307036	22307138	.	-	0	Parent=Os07t0558200-01
Chr07	irgsp1_rep	CDS	22306712	22306947	.	-	2	Parent=Os07t0558200-01
Chr07	irgsp1_rep	CDS	22306562	22306621	.	-	0	Parent=Os07t0558200-01
Chr07	irgsp1_rep	CDS	22305426	22305808	.	-	0	Parent=Os07t0558200-01
Chr07	irgsp1_rep	CDS	22305004	22305079	.	-	1	Parent=Os07t0558200-01
Chr07	irgsp1_rep	CDS	22304858	22304908	.	-	0	Parent=Os07t0558200-01
Chr07	irgsp1_rep	CDS	22304602	22304745	.	-	0	Parent=Os07t0558200-01
Chr07	irgsp1_rep	three_prime_UTR	22304492	22304601	.	-	.	Parent=Os07t0558200-01
Chr07	irgsp1_rep	mRNA	22303860	22306949	.	-	.	ID=Os07t0558200-02;Name=Os07t0558200-02;Locus_id=Os07g0558200;Note=Similar to predicted protein.;Transcript_evidence=AK064484 (DDBJ%2C Best hit);ORF_evidence=XP_002872735.1 (RefSeq);GO=Molecular Function: inositol or phosphatidylinositol phosphatase activity (GO:0004437);InterPro=Inositol monophosphatase (IPR000760);NIAS_FLcDNA=002-111-B05;Expression=AK064484;TENOR=Os07t0558200-02;KEGG=Os07t0558200-02
Chr07	irgsp1_rep	five_prime_UTR	22306949	22306949	.	-	.	Parent=Os07t0558200-02
Chr07	irgsp1_rep	CDS	22306712	22306948	.	-	0	Parent=Os07t0558200-02
Chr07	irgsp1_rep	CDS	22306562	22306621	.	-	0	Parent=Os07t0558200-02
Chr07	irgsp1_rep	CDS	22305426	22305808	.	-	0	Parent=Os07t0558200-02
Chr07	irgsp1_rep	CDS	22305004	22305079	.	-	1	Parent=Os07t0558200-02
Chr07	irgsp1_rep	CDS	22304858	22304908	.	-	0	Parent=Os07t0558200-02
Chr07	irgsp1_rep	CDS	22304602	22304745	.	-	0	Parent=Os07t0558200-02
Chr07	irgsp1_rep	three_prime_UTR	22303860	22304601	.	-	.	Parent=Os07t0558200-02
Chr07	irgsp1_rep	mRNA	22304614	22305141	.	+	.	ID=Os07t0558250-00;Name=Os07t0558250-00;Locus_id=Os07g0558250;Note=Non-protein coding transcript.;Transcript_evidence=EU945291 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0558250-00
Chr07	irgsp1_rep	exon	22304614	22305141	.	+	.	Parent=Os07t0558250-00
Chr07	irgsp1_rep	mRNA	22309439	22313563	.	-	.	ID=Os07t0558300-01;Name=Os07t0558300-01;Locus_id=Os07g0558300;Note=Inositol monophosphatase family protein.;Transcript_evidence=AK120618 (DDBJ%2C Best hit);ORF_evidence=NP_192418.1 (RefSeq);GO=Molecular Function: inositol or phosphatidylinositol phosphatase activity (GO:0004437);InterPro=Inositol monophosphatase (IPR000760),Inositol monophosphatase%2C metal-binding site (IPR020583);NIAS_FLcDNA=J013152B16;Expression=AK120618;TENOR=Os07t0558300-01;KEGG=Os07t0558300-01
Chr07	irgsp1_rep	five_prime_UTR	22313519	22313563	.	-	.	Parent=Os07t0558300-01
Chr07	irgsp1_rep	CDS	22313403	22313518	.	-	0	Parent=Os07t0558300-01
Chr07	irgsp1_rep	CDS	22313165	22313306	.	-	1	Parent=Os07t0558300-01
Chr07	irgsp1_rep	CDS	22311973	22312075	.	-	0	Parent=Os07t0558300-01
Chr07	irgsp1_rep	CDS	22311652	22311884	.	-	2	Parent=Os07t0558300-01
Chr07	irgsp1_rep	CDS	22311503	22311562	.	-	0	Parent=Os07t0558300-01
Chr07	irgsp1_rep	CDS	22310409	22310791	.	-	0	Parent=Os07t0558300-01
Chr07	irgsp1_rep	CDS	22309996	22310071	.	-	1	Parent=Os07t0558300-01
Chr07	irgsp1_rep	CDS	22309852	22309902	.	-	0	Parent=Os07t0558300-01
Chr07	irgsp1_rep	CDS	22309612	22309752	.	-	0	Parent=Os07t0558300-01
Chr07	irgsp1_rep	three_prime_UTR	22309439	22309611	.	-	.	Parent=Os07t0558300-01
Chr07	irgsp1_rep	mRNA	22309627	22310150	.	+	.	ID=Os07t0558350-00;Name=Os07t0558350-00;Locus_id=Os07g0558350;Note=Non-protein coding transcript.;Transcript_evidence=EU945291 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0558350-00
Chr07	irgsp1_rep	exon	22309627	22310150	.	+	.	Parent=Os07t0558350-00
Chr07	irgsp1_rep	mRNA	22316343	22317935	.	-	.	ID=Os07t0558400-01;Name=Os07t0558400-01;Locus_id=Os07g0558400;Oryzabase Gene Symbol Synonym(s)=CP29%2C OsCP29%2C LHCB4%2C Lhcb4%2C OsLHCB4;Oryzabase Gene Name Synonym(s)=light-harvesting protein CP29%2C PSII inner antenna subunit CP29%2C PSII antenna CP29%2C Photosystem II Inner Antenna CP29%2C light-harvesting complex subunit b4;Note=Similar to Chlorophyll a/b-binding protein CP29 precursor.;Transcript_evidence=AK058293 (DDBJ%2C Best hit),AK098992 (DDBJ%2C Best hit),AK103924 (DDBJ%2C Best hit),AK104309 (DDBJ%2C Best hit),AK104619 (DDBJ%2C Best hit),AK119534 (DDBJ%2C Best hit);ORF_evidence=O65217 (UniProt);GO=Biological Process: photosynthesis%2C light harvesting (GO:0009765),Cellular Component: membrane (GO:0016020);InterPro=Chlorophyll A-B binding protein%2C plant (IPR001344),Chlorophyll A-B binding protein (IPR022796),Chlorophyll a/b binding protein domain (IPR023329);NIAS_FLcDNA=001-013-F01,J013098H13,001-013-C12,001-013-D03,006-309-F11,001-204-B02;Oryzabase=9603;Expression=AK058293;TENOR=Os07t0558400-01;KEGG=Os07t0558400-01
Chr07	irgsp1_rep	five_prime_UTR	22317876	22317935	.	-	.	Parent=Os07t0558400-01
Chr07	irgsp1_rep	CDS	22317369	22317875	.	-	0	Parent=Os07t0558400-01
Chr07	irgsp1_rep	CDS	22316631	22316996	.	-	0	Parent=Os07t0558400-01
Chr07	irgsp1_rep	three_prime_UTR	22316343	22316630	.	-	.	Parent=Os07t0558400-01
Chr07	irgsp1_rep	mRNA	22319163	22323151	.	-	.	ID=Os07t0558500-01;Name=Os07t0558500-01;Locus_id=Os07g0558500;CGSNL Gene Symbol=NYC4;CGSNL Gene Name=NON-YELLOW COLORING4;Oryzabase Gene Symbol Synonym(s)=OsNYC4%2C THF1%2C OsTHF1;Oryzabase Gene Name Synonym(s)=thylakoid formation1;Note=Inositol phosphatase-like protein.;Transcript_evidence=AK064914 (DDBJ%2C Best hit);ORF_evidence=Q84PB7 (UniProt);GO=Biological Process: thylakoid membrane organization (GO:0010027),Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523);InterPro=Photosystem II Psp29%2C biogenesis (IPR017499);NIAS_FLcDNA=J013000M13;Oryzabase=9924;Expression=AK064914;TENOR=Os07t0558500-01;KEGG=Os07t0558500-01
Chr07	irgsp1_rep	five_prime_UTR	22323055	22323151	.	-	.	Parent=Os07t0558500-01
Chr07	irgsp1_rep	CDS	22322889	22323054	.	-	0	Parent=Os07t0558500-01
Chr07	irgsp1_rep	CDS	22321641	22321911	.	-	2	Parent=Os07t0558500-01
Chr07	irgsp1_rep	CDS	22320981	22321197	.	-	1	Parent=Os07t0558500-01
Chr07	irgsp1_rep	CDS	22319740	22319855	.	-	0	Parent=Os07t0558500-01
Chr07	irgsp1_rep	CDS	22319353	22319446	.	-	1	Parent=Os07t0558500-01
Chr07	irgsp1_rep	three_prime_UTR	22319163	22319352	.	-	.	Parent=Os07t0558500-01
Chr07	irgsp1_rep	mRNA	22319039	22320843	.	-	.	ID=Os07t0558500-02;Name=Os07t0558500-02;Locus_id=Os07g0558500;CGSNL Gene Symbol=NYC4;CGSNL Gene Name=NON-YELLOW COLORING4;Oryzabase Gene Symbol Synonym(s)=OsNYC4%2C THF1%2C OsTHF1;Oryzabase Gene Name Synonym(s)=thylakoid formation1;Note=Similar to Protein THYLAKOID FORMATION1%2C chloroplastic.;Transcript_evidence=AK059695 (DDBJ%2C Best hit);ORF_evidence=Q84PB7 (UniProt);GO=Biological Process: thylakoid membrane organization (GO:0010027),Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523);InterPro=Photosystem II Psp29%2C biogenesis (IPR017499);NIAS_FLcDNA=001-032-B12;Oryzabase=9924;Expression=AK059695;TENOR=Os07t0558500-02;KEGG=Os07t0558500-02
Chr07	irgsp1_rep	five_prime_UTR	22319859	22320843	.	-	.	Parent=Os07t0558500-02
Chr07	irgsp1_rep	CDS	22319740	22319858	.	-	0	Parent=Os07t0558500-02
Chr07	irgsp1_rep	CDS	22319353	22319446	.	-	1	Parent=Os07t0558500-02
Chr07	irgsp1_rep	three_prime_UTR	22319039	22319352	.	-	.	Parent=Os07t0558500-02
Chr07	irgsp1_rep	mRNA	22333941	22338268	.	+	.	ID=Os07t0558800-01;Name=Os07t0558800-01;Locus_id=Os07g0558800;Note=PapD-like domain containing protein.;Transcript_evidence=AK100986 (DDBJ%2C Best hit);ORF_evidence=B6TP74 (UniProt);GO=Molecular Function: structural molecule activity (GO:0005198);InterPro=Major sperm protein (IPR000535),PapD-like (IPR008962);NIAS_FLcDNA=J023145E05;Expression=AK100986;TENOR=Os07t0558800-01;KEGG=Os07t0558800-01
Chr07	irgsp1_rep	five_prime_UTR	22333941	22333959	.	+	.	Parent=Os07t0558800-01
Chr07	irgsp1_rep	CDS	22333960	22334287	.	+	0	Parent=Os07t0558800-01
Chr07	irgsp1_rep	CDS	22335587	22335657	.	+	2	Parent=Os07t0558800-01
Chr07	irgsp1_rep	CDS	22335807	22335888	.	+	0	Parent=Os07t0558800-01
Chr07	irgsp1_rep	CDS	22335985	22336100	.	+	2	Parent=Os07t0558800-01
Chr07	irgsp1_rep	CDS	22337525	22337602	.	+	0	Parent=Os07t0558800-01
Chr07	irgsp1_rep	CDS	22337702	22337821	.	+	0	Parent=Os07t0558800-01
Chr07	irgsp1_rep	CDS	22337911	22337970	.	+	0	Parent=Os07t0558800-01
Chr07	irgsp1_rep	three_prime_UTR	22337971	22338268	.	+	.	Parent=Os07t0558800-01
Chr07	irgsp1_rep	mRNA	22339803	22340308	.	+	.	ID=Os07t0558900-00;Name=Os07t0558900-00;Locus_id=Os07g0558900;Note=Protein of unknown function wound-induced domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6Z406 (UniProt);InterPro=Protein of unknown function wound-induced (IPR022251);TENOR=Os07t0558900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	22339803	22339946	.	+	0	Parent=Os07t0558900-00
Chr07	irgsp1_rep	CDS	22340114	22340308	.	+	0	Parent=Os07t0558900-00
Chr07	irgsp1_rep	mRNA	22340365	22340788	.	+	.	ID=Os07t0559000-01;Name=Os07t0559000-01;Locus_id=Os07g0559000;Note=Non-protein coding transcript.;Transcript_evidence=AK063204 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-112-C11;TENOR=Os07t0559000-01
Chr07	irgsp1_rep	exon	22340365	22340788	.	+	.	Parent=Os07t0559000-01
Chr07	irgsp1_rep	mRNA	22343365	22343942	.	+	.	ID=Os07t0559100-01;Name=Os07t0559100-01;Locus_id=Os07g0559100;Note=Hypothetical conserved gene.;Transcript_evidence=AK287944 (DDBJ%2C Best hit);ORF_evidence=GeneMark;InterPro=Protein of unknown function wound-induced (IPR022251);NIAS_FLcDNA=J075022D04;TENOR=Os07t0559100-01;KEGG=Os07t0559100-01
Chr07	irgsp1_rep	five_prime_UTR	22343365	22343451	.	+	.	Parent=Os07t0559100-01
Chr07	irgsp1_rep	CDS	22343452	22343673	.	+	0	Parent=Os07t0559100-01
Chr07	irgsp1_rep	three_prime_UTR	22343674	22343942	.	+	.	Parent=Os07t0559100-01
Chr07	irgsp1_rep	mRNA	22346421	22348417	.	-	.	ID=Os07t0559400-00;Name=Os07t0559400-00;Locus_id=Os07g0559400;Note=Similar to uncharacterized secreted protein.;Transcript_evidence=CT836054 (DDBJ%2C Best hit);ORF_evidence=B6SQJ4 (UniProt);InterPro=Protein of unknown function DUF1223 (IPR010634),Thioredoxin-like fold (IPR012336);TENOR=Os07t0559400-00;KEGG=Os07t0559400-00
Chr07	irgsp1_rep	five_prime_UTR	22348104	22348417	.	-	.	Parent=Os07t0559400-00
Chr07	irgsp1_rep	CDS	22347642	22348103	.	-	0	Parent=Os07t0559400-00
Chr07	irgsp1_rep	CDS	22346671	22347030	.	-	0	Parent=Os07t0559400-00
Chr07	irgsp1_rep	three_prime_UTR	22346421	22346670	.	-	.	Parent=Os07t0559400-00
Chr07	irgsp1_rep	mRNA	22347903	22349716	.	+	.	ID=Os07t0559550-00;Name=Os07t0559550-00;Locus_id=Os07g0559550;Note=Hypothetical gene.;Transcript_evidence=EU948125 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0559550-00;KEGG=Os07t0559550-00
Chr07	irgsp1_rep	five_prime_UTR	22347903	22347904	.	+	.	Parent=Os07t0559550-00
Chr07	irgsp1_rep	CDS	22347905	22348103	.	+	0	Parent=Os07t0559550-00
Chr07	irgsp1_rep	CDS	22349494	22349549	.	+	2	Parent=Os07t0559550-00
Chr07	irgsp1_rep	three_prime_UTR	22349550	22349716	.	+	.	Parent=Os07t0559550-00
Chr07	irgsp1_rep	mRNA	22353362	22355669	.	-	.	ID=Os07t0559700-00;Name=Os07t0559700-00;Locus_id=Os07g0559700;CGSNL Gene Symbol=MST6;CGSNL Gene Name=MONOSACCHARIDE TRANSPORTER 6;Oryzabase Gene Symbol Synonym(s)=OsMST6;Oryzabase Gene Name Synonym(s)=monosaccharide transporter 6;Note=Similar to Monosaccharide transporter 3.;Transcript_evidence=AY342322 (DDBJ%2C Best hit);ORF_evidence=NP_001148007.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);Oryzabase=14693;Expression=AY342322;TENOR=Os07t0559700-00;KEGG=Os07t0559700-00
Chr07	irgsp1_rep	CDS	22355537	22355669	.	-	0	Parent=Os07t0559700-00
Chr07	irgsp1_rep	CDS	22354820	22355148	.	-	2	Parent=Os07t0559700-00
Chr07	irgsp1_rep	CDS	22353362	22354492	.	-	0	Parent=Os07t0559700-00
Chr07	irgsp1_rep	mRNA	22362652	22362924	.	-	.	ID=Os07t0560100-00;Name=Os07t0560100-00;Locus_id=Os07g0560100;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G3B5 (UniProt);TENOR=Os07t0560100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	22362652	22362924	.	-	0	Parent=Os07t0560100-00
Chr07	irgsp1_rep	mRNA	22368377	22368443	.	-	.	ID=Os07t0560200-00;Name=Os07t0560200-00;Locus_id=Os07g0560200;Note=Non-protein coding transcript.;Transcript_evidence=X06284 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0560200-00
Chr07	irgsp1_rep	exon	22368377	22368443	.	-	.	Parent=Os07t0560200-00
Chr07	irgsp1_rep	mRNA	22370280	22372480	.	-	.	ID=Os07t0560300-01;Name=Os07t0560300-01;Locus_id=Os07g0560300;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK101241 (DDBJ%2C Best hit);ORF_evidence=A2YML8 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033031P12;Expression=AK101241;TENOR=Os07t0560300-01;KEGG=Os07t0560300-01
Chr07	irgsp1_rep	five_prime_UTR	22372374	22372480	.	-	.	Parent=Os07t0560300-01
Chr07	irgsp1_rep	CDS	22370728	22372373	.	-	0	Parent=Os07t0560300-01
Chr07	irgsp1_rep	CDS	22370524	22370641	.	-	1	Parent=Os07t0560300-01
Chr07	irgsp1_rep	three_prime_UTR	22370280	22370523	.	-	.	Parent=Os07t0560300-01
Chr07	irgsp1_rep	mRNA	22374836	22376769	.	+	.	ID=Os07t0560400-01;Name=Os07t0560400-01;Locus_id=Os07g0560400;Note=Hypothetical protein.;Transcript_evidence=AK107443 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-128-B08;TENOR=Os07t0560400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	22374836	22374836	.	+	.	Parent=Os07t0560400-01
Chr07	irgsp1_rep	CDS	22374837	22375058	.	+	0	Parent=Os07t0560400-01
Chr07	irgsp1_rep	three_prime_UTR	22375059	22376769	.	+	.	Parent=Os07t0560400-01
Chr07	irgsp1_rep	mRNA	22386200	22386925	.	-	.	ID=Os07t0560700-01;Name=Os07t0560700-01;Locus_id=Os07g0560700;Note=Hypothetical conserved gene.;Transcript_evidence=AK105369 (DDBJ%2C Best hit);ORF_evidence=A2YML9 (UniProt);NIAS_FLcDNA=001-120-B08;TENOR=Os07t0560700-01;KEGG=Os07t0560700-01
Chr07	irgsp1_rep	CDS	22386347	22386925	.	-	0	Parent=Os07t0560700-01
Chr07	irgsp1_rep	three_prime_UTR	22386200	22386346	.	-	.	Parent=Os07t0560700-01
Chr07	irgsp1_rep	mRNA	22385352	22386696	.	-	.	ID=Os07t0560700-02;Name=Os07t0560700-02;Locus_id=Os07g0560700;Note=Hypothetical conserved gene.;Transcript_evidence=AK064081 (DDBJ%2C Best hit);ORF_evidence=A2YML9 (UniProt);NIAS_FLcDNA=002-100-B03;Expression=AK064081;TENOR=Os07t0560700-02;KEGG=Os07t0560700-02
Chr07	irgsp1_rep	five_prime_UTR	22386695	22386696	.	-	.	Parent=Os07t0560700-02
Chr07	irgsp1_rep	CDS	22386347	22386694	.	-	0	Parent=Os07t0560700-02
Chr07	irgsp1_rep	three_prime_UTR	22385352	22386346	.	-	.	Parent=Os07t0560700-02
Chr07	irgsp1_rep	mRNA	22402733	22406085	.	-	.	ID=Os07t0561101-01;Name=Os07t0561101-01;Locus_id=Os07g0561101;CGSNL Gene Symbol=HYPRP23;CGSNL Gene Name=HYBRID PROLINE-RICH PROTEIN 23;Oryzabase Gene Symbol Synonym(s)=OsHyPRP23%2C HyPRP23;Oryzabase Gene Name Synonym(s)=Hybrid Proline-Rich Protein 23;Note=Hypothetical conserved gene.;Transcript_evidence=AK288910 (DDBJ%2C Best hit);ORF_evidence=B9FXX1 (UniProt);GO=Biological Process: lipid transport (GO:0006869),Molecular Function: structural constituent of cell wall (GO:0005199);InterPro=Pistil-specific extensin-like protein (IPR003882),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=J090081G09;Oryzabase=23415;TENOR=Os07t0561101-01;KEGG=Os07t0561101-01
Chr07	irgsp1_rep	five_prime_UTR	22405210	22406085	.	-	.	Parent=Os07t0561101-01
Chr07	irgsp1_rep	CDS	22404280	22405209	.	-	0	Parent=Os07t0561101-01
Chr07	irgsp1_rep	three_prime_UTR	22402733	22404279	.	-	.	Parent=Os07t0561101-01
Chr07	irgsp1_rep	mRNA	22411227	22413069	.	-	.	ID=Os07t0561300-01;Name=Os07t0561300-01;Locus_id=Os07g0561300;Oryzabase Gene Symbol Synonym(s)=OsFbox396%2C Os_F0578%2C OsMsr9;Oryzabase Gene Name Synonym(s)=F-box protein 396;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK072982 (DDBJ%2C Best hit);ORF_evidence=A2YMM3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810);NIAS_FLcDNA=J023149I22;Oryzabase=17171;Expression=AK072982;TENOR=Os07t0561300-01;KEGG=Os07t0561300-01
Chr07	irgsp1_rep	five_prime_UTR	22412845	22413069	.	-	.	Parent=Os07t0561300-01
Chr07	irgsp1_rep	five_prime_UTR	22412286	22412379	.	-	.	Parent=Os07t0561300-01
Chr07	irgsp1_rep	CDS	22412061	22412285	.	-	0	Parent=Os07t0561300-01
Chr07	irgsp1_rep	CDS	22411871	22411945	.	-	0	Parent=Os07t0561300-01
Chr07	irgsp1_rep	CDS	22411546	22411752	.	-	0	Parent=Os07t0561300-01
Chr07	irgsp1_rep	three_prime_UTR	22411227	22411545	.	-	.	Parent=Os07t0561300-01
Chr07	irgsp1_rep	mRNA	22416201	22417146	.	+	.	ID=Os07t0561500-01;Name=Os07t0561500-01;Locus_id=Os07g0561500;Note=Short-chain dehydrogenase/reductase SDR domain containing protein.;Transcript_evidence=AK318579 (DDBJ%2C Best hit),AK288969 (DDBJ%2C Best hit);ORF_evidence=NP_187048.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);NIAS_FLcDNA=J090084P16,J090084P16;TENOR=Os07t0561500-01;KEGG=Os07t0561500-01 (EC:1.1.1.100)
Chr07	irgsp1_rep	five_prime_UTR	22416201	22416295	.	+	.	Parent=Os07t0561500-01
Chr07	irgsp1_rep	CDS	22416296	22417093	.	+	0	Parent=Os07t0561500-01
Chr07	irgsp1_rep	three_prime_UTR	22417094	22417146	.	+	.	Parent=Os07t0561500-01
Chr07	irgsp1_rep	mRNA	22427661	22428649	.	+	.	ID=Os07t0561800-01;Name=Os07t0561800-01;Locus_id=Os07g0561800;Note=Similar to carbohydrate transporter/ sugar porter.;Transcript_evidence=AK108426 (DDBJ%2C Best hit);ORF_evidence=NP_001147880.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transmembrane transporter activity (GO:0022857);InterPro=General substrate transporter (IPR005828),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=002-143-A07;TENOR=Os07t0561800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	22427661	22427661	.	+	.	Parent=Os07t0561800-01
Chr07	irgsp1_rep	CDS	22427662	22428525	.	+	0	Parent=Os07t0561800-01
Chr07	irgsp1_rep	three_prime_UTR	22428526	22428649	.	+	.	Parent=Os07t0561800-01
Chr07	irgsp1_rep	mRNA	22428263	22429638	.	+	.	ID=Os07t0561800-02;Name=Os07t0561800-02;Locus_id=Os07g0561800;Note=Similar to carbohydrate transporter/ sugar porter.;Transcript_evidence=AK111334 (DDBJ%2C Best hit);ORF_evidence=NP_001147880.1 (RefSeq);NIAS_FLcDNA=002-181-E11;Expression=AK111334;TENOR=Os07t0561800-02;KEGG=Os07t0561800-02
Chr07	irgsp1_rep	five_prime_UTR	22428263	22428264	.	+	.	Parent=Os07t0561800-02
Chr07	irgsp1_rep	CDS	22428265	22428525	.	+	0	Parent=Os07t0561800-02
Chr07	irgsp1_rep	three_prime_UTR	22428526	22429638	.	+	.	Parent=Os07t0561800-02
Chr07	irgsp1_rep	mRNA	22449175	22450044	.	-	.	ID=Os07t0562051-00;Name=Os07t0562051-00;Locus_id=Os07g0562051;Note=Similar to exostosin family protein.;Transcript_evidence=CT836043 (DDBJ%2C Best hit);ORF_evidence=XP_002867760.1 (RefSeq);TENOR=Os07t0562051-00
Chr07	irgsp1_rep	five_prime_UTR	22449857	22450044	.	-	.	Parent=Os07t0562051-00
Chr07	irgsp1_rep	CDS	22449491	22449856	.	-	0	Parent=Os07t0562051-00
Chr07	irgsp1_rep	three_prime_UTR	22449175	22449490	.	-	.	Parent=Os07t0562051-00
Chr07	irgsp1_rep	mRNA	22474561	22476365	.	+	.	ID=Os07t0562400-01;Name=Os07t0562400-01;Locus_id=Os07g0562400;Note=Major facilitator superfamily protein.;Transcript_evidence=AK072020 (DDBJ%2C Best hit);ORF_evidence=NP_001147880.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transmembrane transporter activity (GO:0022857);InterPro=General substrate transporter (IPR005828),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J013104C21;Expression=AK072020;TENOR=Os07t0562400-01;KEGG=Os07t0562400-01
Chr07	irgsp1_rep	five_prime_UTR	22474561	22474616	.	+	.	Parent=Os07t0562400-01
Chr07	irgsp1_rep	CDS	22474617	22476221	.	+	0	Parent=Os07t0562400-01
Chr07	irgsp1_rep	three_prime_UTR	22476222	22476365	.	+	.	Parent=Os07t0562400-01
Chr07	irgsp1_rep	mRNA	22487434	22488617	.	+	.	ID=Os07t0562700-01;Name=Os07t0562700-01;Locus_id=Os07g0562700;Oryzabase Gene Name Synonym(s)=Type III chlorophyll a/b-binding protein%2C PSII Cab type III;Note=Similar to Type III chlorophyll a/b-binding protein (Fragment).;Transcript_evidence=AK061512 (DDBJ%2C Best hit),AK068972 (DDBJ%2C Best hit),AK103926 (DDBJ%2C Best hit),AK103999 (DDBJ%2C Best hit),AK104224 (DDBJ%2C Best hit),AK104465 (DDBJ%2C Best hit),AK109399 (DDBJ%2C Best hit),AK119533 (DDBJ%2C Best hit),AK119545 (DDBJ%2C Best hit);ORF_evidence=B7SAW3 (UniProt);GO=Biological Process: photosynthesis%2C light harvesting (GO:0009765),Cellular Component: membrane (GO:0016020);InterPro=Chlorophyll A-B binding protein%2C plant (IPR001344),Chlorophyll A-B binding protein (IPR022796),Chlorophyll a/b binding protein domain (IPR023329);NIAS_FLcDNA=006-309-G12,J023001G03,001-013-D02,001-019-D10,006-306-E11,006-301-C07,006-301-C08,001-203-F03,001-206-G05;Oryzabase=9608;TENOR=Os07t0562700-01
Chr07	irgsp1_rep	five_prime_UTR	22487434	22487498	.	+	.	Parent=Os07t0562700-01
Chr07	irgsp1_rep	CDS	22487499	22487627	.	+	0	Parent=Os07t0562700-01
Chr07	irgsp1_rep	CDS	22487780	22488451	.	+	0	Parent=Os07t0562700-01
Chr07	irgsp1_rep	three_prime_UTR	22488452	22488617	.	+	.	Parent=Os07t0562700-01
Chr07	irgsp1_rep	mRNA	22487465	22488588	.	+	.	ID=Os07t0562700-02;Name=Os07t0562700-02;Locus_id=Os07g0562700;Oryzabase Gene Name Synonym(s)=Type III chlorophyll a/b-binding protein%2C PSII Cab type III;Note=Similar to Type III chlorophyll a/b-binding protein (Fragment).;Transcript_evidence=AK104495 (DDBJ%2C Best hit);ORF_evidence=B7SAW3 (UniProt);GO=Biological Process: photosynthesis%2C light harvesting (GO:0009765),Cellular Component: membrane (GO:0016020);InterPro=Chlorophyll A-B binding protein%2C plant (IPR001344),Chlorophyll A-B binding protein (IPR022796),Chlorophyll a/b binding protein domain (IPR023329);NIAS_FLcDNA=006-302-C03;Oryzabase=9608;Expression=AK104495;TENOR=Os07t0562700-02;KEGG=Os07t0562700-02
Chr07	irgsp1_rep	five_prime_UTR	22487465	22487498	.	+	.	Parent=Os07t0562700-02
Chr07	irgsp1_rep	CDS	22487499	22487627	.	+	0	Parent=Os07t0562700-02
Chr07	irgsp1_rep	CDS	22487780	22488451	.	+	0	Parent=Os07t0562700-02
Chr07	irgsp1_rep	three_prime_UTR	22488452	22488588	.	+	.	Parent=Os07t0562700-02
Chr07	irgsp1_rep	mRNA	22488827	22497724	.	-	.	ID=Os07t0562800-01;Name=Os07t0562800-01;Locus_id=Os07g0562800;Oryzabase Gene Symbol Synonym(s)=OsMyoVIIIA%2C OsMyoVIIIA-1%2C OsMyoVIIIA-2;Oryzabase Gene Name Synonym(s)=Myosin VIIIA%2C Myosin class VIII A;Note=Similar to Myosin heavy chain class VIII A2 protein.;Transcript_evidence=AK068466 (DDBJ%2C Best hit);ORF_evidence=Q6UAL4 (UniProt);GO=Cellular Component: myosin complex (GO:0016459),Molecular Function: motor activity (GO:0003774),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=IQ motif%2C EF-hand binding site (IPR000048),Myosin head%2C motor domain (IPR001609);NIAS_FLcDNA=J013155K02;Oryzabase=14048;Expression=AK068466;TENOR=Os07t0562800-01;KEGG=Os07t0562800-01
Chr07	irgsp1_rep	five_prime_UTR	22497694	22497724	.	-	.	Parent=Os07t0562800-01
Chr07	irgsp1_rep	CDS	22497145	22497693	.	-	0	Parent=Os07t0562800-01
Chr07	irgsp1_rep	CDS	22496491	22496592	.	-	0	Parent=Os07t0562800-01
Chr07	irgsp1_rep	CDS	22496265	22496408	.	-	0	Parent=Os07t0562800-01
Chr07	irgsp1_rep	CDS	22496039	22496189	.	-	0	Parent=Os07t0562800-01
Chr07	irgsp1_rep	CDS	22495935	22495962	.	-	2	Parent=Os07t0562800-01
Chr07	irgsp1_rep	CDS	22495666	22495831	.	-	1	Parent=Os07t0562800-01
Chr07	irgsp1_rep	CDS	22495505	22495568	.	-	0	Parent=Os07t0562800-01
Chr07	irgsp1_rep	CDS	22495378	22495391	.	-	2	Parent=Os07t0562800-01
Chr07	irgsp1_rep	CDS	22495212	22495296	.	-	0	Parent=Os07t0562800-01
Chr07	irgsp1_rep	CDS	22495001	22495104	.	-	2	Parent=Os07t0562800-01
Chr07	irgsp1_rep	CDS	22494769	22494907	.	-	0	Parent=Os07t0562800-01
Chr07	irgsp1_rep	CDS	22494452	22494570	.	-	2	Parent=Os07t0562800-01
Chr07	irgsp1_rep	CDS	22494204	22494356	.	-	0	Parent=Os07t0562800-01
Chr07	irgsp1_rep	CDS	22494032	22494121	.	-	0	Parent=Os07t0562800-01
Chr07	irgsp1_rep	CDS	22493360	22493437	.	-	0	Parent=Os07t0562800-01
Chr07	irgsp1_rep	CDS	22492578	22492736	.	-	0	Parent=Os07t0562800-01
Chr07	irgsp1_rep	CDS	22492223	22492423	.	-	0	Parent=Os07t0562800-01
Chr07	irgsp1_rep	CDS	22491802	22492007	.	-	0	Parent=Os07t0562800-01
Chr07	irgsp1_rep	CDS	22491560	22491695	.	-	1	Parent=Os07t0562800-01
Chr07	irgsp1_rep	CDS	22491332	22491461	.	-	0	Parent=Os07t0562800-01
Chr07	irgsp1_rep	CDS	22491020	22491166	.	-	2	Parent=Os07t0562800-01
Chr07	irgsp1_rep	CDS	22490807	22490928	.	-	2	Parent=Os07t0562800-01
Chr07	irgsp1_rep	CDS	22490263	22490469	.	-	0	Parent=Os07t0562800-01
Chr07	irgsp1_rep	CDS	22489271	22489735	.	-	0	Parent=Os07t0562800-01
Chr07	irgsp1_rep	three_prime_UTR	22488827	22489270	.	-	.	Parent=Os07t0562800-01
Chr07	irgsp1_rep	mRNA	22488833	22496082	.	-	.	ID=Os07t0562800-02;Name=Os07t0562800-02;Locus_id=Os07g0562800;Oryzabase Gene Symbol Synonym(s)=OsMyoVIIIA%2C OsMyoVIIIA-1%2C OsMyoVIIIA-2;Oryzabase Gene Name Synonym(s)=Myosin VIIIA%2C Myosin class VIII A;Note=Similar to Myosin heavy chain class VIII A2 protein.;Transcript_evidence=AK120271 (DDBJ%2C Best hit);ORF_evidence=Q6UAL4 (UniProt);GO=Cellular Component: myosin complex (GO:0016459),Molecular Function: motor activity (GO:0003774),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=IQ motif%2C EF-hand binding site (IPR000048),Myosin head%2C motor domain (IPR001609);NIAS_FLcDNA=J013047M22;Oryzabase=14048;Expression=AK120271;TENOR=Os07t0562800-02;KEGG=Os07t0562800-02
Chr07	irgsp1_rep	five_prime_UTR	22496082	22496082	.	-	.	Parent=Os07t0562800-02
Chr07	irgsp1_rep	CDS	22496039	22496081	.	-	0	Parent=Os07t0562800-02
Chr07	irgsp1_rep	CDS	22495935	22495962	.	-	2	Parent=Os07t0562800-02
Chr07	irgsp1_rep	CDS	22495666	22495831	.	-	1	Parent=Os07t0562800-02
Chr07	irgsp1_rep	CDS	22495505	22495568	.	-	0	Parent=Os07t0562800-02
Chr07	irgsp1_rep	CDS	22495378	22495391	.	-	2	Parent=Os07t0562800-02
Chr07	irgsp1_rep	CDS	22495212	22495296	.	-	0	Parent=Os07t0562800-02
Chr07	irgsp1_rep	CDS	22495001	22495104	.	-	2	Parent=Os07t0562800-02
Chr07	irgsp1_rep	CDS	22494769	22494907	.	-	0	Parent=Os07t0562800-02
Chr07	irgsp1_rep	CDS	22494452	22494570	.	-	2	Parent=Os07t0562800-02
Chr07	irgsp1_rep	CDS	22494204	22494356	.	-	0	Parent=Os07t0562800-02
Chr07	irgsp1_rep	CDS	22494032	22494121	.	-	0	Parent=Os07t0562800-02
Chr07	irgsp1_rep	CDS	22493360	22493437	.	-	0	Parent=Os07t0562800-02
Chr07	irgsp1_rep	CDS	22492578	22492736	.	-	0	Parent=Os07t0562800-02
Chr07	irgsp1_rep	CDS	22492223	22492423	.	-	0	Parent=Os07t0562800-02
Chr07	irgsp1_rep	CDS	22491802	22492007	.	-	0	Parent=Os07t0562800-02
Chr07	irgsp1_rep	CDS	22491560	22491695	.	-	1	Parent=Os07t0562800-02
Chr07	irgsp1_rep	CDS	22491332	22491461	.	-	0	Parent=Os07t0562800-02
Chr07	irgsp1_rep	CDS	22491020	22491166	.	-	2	Parent=Os07t0562800-02
Chr07	irgsp1_rep	CDS	22490807	22490928	.	-	2	Parent=Os07t0562800-02
Chr07	irgsp1_rep	CDS	22490263	22490469	.	-	0	Parent=Os07t0562800-02
Chr07	irgsp1_rep	CDS	22489271	22489735	.	-	0	Parent=Os07t0562800-02
Chr07	irgsp1_rep	three_prime_UTR	22488833	22489270	.	-	.	Parent=Os07t0562800-02
Chr07	irgsp1_rep	mRNA	22488828	22491597	.	-	.	ID=Os07t0562800-03;Name=Os07t0562800-03;Locus_id=Os07g0562800;Oryzabase Gene Symbol Synonym(s)=OsMyoVIIIA%2C OsMyoVIIIA-1%2C OsMyoVIIIA-2;Oryzabase Gene Name Synonym(s)=Myosin VIIIA%2C Myosin class VIII A;Note=Similar to Myosin heavy chain class VIII A2 protein.;Transcript_evidence=AK104858 (DDBJ%2C Best hit);ORF_evidence=Q6UAL4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);NIAS_FLcDNA=001-043-D03;Oryzabase=14048;Expression=AK104858;TENOR=Os07t0562800-03;KEGG=Os07t0562800-03
Chr07	irgsp1_rep	five_prime_UTR	22491596	22491597	.	-	.	Parent=Os07t0562800-03
Chr07	irgsp1_rep	CDS	22491560	22491595	.	-	0	Parent=Os07t0562800-03
Chr07	irgsp1_rep	CDS	22491332	22491461	.	-	0	Parent=Os07t0562800-03
Chr07	irgsp1_rep	CDS	22491020	22491166	.	-	2	Parent=Os07t0562800-03
Chr07	irgsp1_rep	CDS	22490807	22490928	.	-	2	Parent=Os07t0562800-03
Chr07	irgsp1_rep	CDS	22490263	22490469	.	-	0	Parent=Os07t0562800-03
Chr07	irgsp1_rep	CDS	22489271	22489735	.	-	0	Parent=Os07t0562800-03
Chr07	irgsp1_rep	three_prime_UTR	22488828	22489270	.	-	.	Parent=Os07t0562800-03
Chr07	irgsp1_rep	mRNA	22506550	22509112	.	+	.	ID=Os07t0562900-00;Name=Os07t0562900-00;Locus_id=Os07g0562900;Note=Hypothetical conserved gene.;Transcript_evidence=CT836099 (DDBJ%2C Best hit);ORF_evidence=B9FXX6 (UniProt);TENOR=Os07t0562900-00;KEGG=Os07t0562900-00
Chr07	irgsp1_rep	five_prime_UTR	22506550	22506586	.	+	.	Parent=Os07t0562900-00
Chr07	irgsp1_rep	CDS	22506587	22506698	.	+	0	Parent=Os07t0562900-00
Chr07	irgsp1_rep	CDS	22506783	22506846	.	+	2	Parent=Os07t0562900-00
Chr07	irgsp1_rep	CDS	22508768	22508927	.	+	1	Parent=Os07t0562900-00
Chr07	irgsp1_rep	three_prime_UTR	22508928	22509112	.	+	.	Parent=Os07t0562900-00
Chr07	irgsp1_rep	mRNA	22515343	22518319	.	-	.	ID=Os07t0562950-00;Name=Os07t0562950-00;Locus_id=Os07g0562950;Note=Non-protein coding transcript.;Transcript_evidence=BT066756 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0562950-00
Chr07	irgsp1_rep	exon	22518116	22518319	.	-	.	Parent=Os07t0562950-00
Chr07	irgsp1_rep	exon	22517774	22517884	.	-	.	Parent=Os07t0562950-00
Chr07	irgsp1_rep	exon	22517108	22517432	.	-	.	Parent=Os07t0562950-00
Chr07	irgsp1_rep	exon	22516569	22516637	.	-	.	Parent=Os07t0562950-00
Chr07	irgsp1_rep	exon	22516355	22516421	.	-	.	Parent=Os07t0562950-00
Chr07	irgsp1_rep	exon	22516126	22516220	.	-	.	Parent=Os07t0562950-00
Chr07	irgsp1_rep	exon	22515811	22515878	.	-	.	Parent=Os07t0562950-00
Chr07	irgsp1_rep	exon	22515563	22515668	.	-	.	Parent=Os07t0562950-00
Chr07	irgsp1_rep	exon	22515343	22515465	.	-	.	Parent=Os07t0562950-00
Chr07	irgsp1_rep	mRNA	22518146	22518738	.	+	.	ID=Os07t0563000-01;Name=Os07t0563000-01;Locus_id=Os07g0563000;Note=Similar to D-erythro-sphingosine kinase/ diacylglycerol kinase.;Transcript_evidence=AK288074 (DDBJ%2C Best hit);ORF_evidence=NP_001151262.1 (RefSeq);NIAS_FLcDNA=J075162C16;TENOR=Os07t0563000-01;KEGG=Os07t0563000-01
Chr07	irgsp1_rep	five_prime_UTR	22518146	22518147	.	+	.	Parent=Os07t0563000-01
Chr07	irgsp1_rep	CDS	22518148	22518315	.	+	0	Parent=Os07t0563000-01
Chr07	irgsp1_rep	three_prime_UTR	22518316	22518738	.	+	.	Parent=Os07t0563000-01
Chr07	irgsp1_rep	mRNA	22534900	22542783	.	+	.	ID=Os07t0563300-01;Name=Os07t0563300-01;Locus_id=Os07g0563300;RAP-DB Gene Symbol Synonym(s)=GD1;RAP-DB Gene Name Synonym(s)=GERMINATION DEFECTIVE 1%2C germination-defective1;CGSNL Gene Symbol=GD1;CGSNL Gene Name=GERMINATION DEFECTIVE 1;Oryzabase Gene Symbol Synonym(s)=OsVAL1%2C VAL1%2C DLN186%2C OsDLN186;Oryzabase Gene Name Synonym(s)=germination-defective1%2C DLN repressor 186%2C DLN motif protein 186;Note=B3 domain transcriptional repressor%2C Regulator of seed germination and seedling development;Transcript_evidence=Inferred from literature;ORF_evidence=Q0D5G4;GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C C2H2 (IPR007087),DNA-binding pseudobarrel domain (IPR015300),B3 DNA binding domain (IPR003340),Zinc finger%2C CW-type (IPR011124);Manual Curation=February 28%2C 2014;Literature_PMID=23581288;Oryzabase=20528;TENOR=Os07t0563300-00
Chr07	irgsp1_rep	five_prime_UTR	22534900	22535034	.	+	.	Parent=Os07t0563300-01
Chr07	irgsp1_rep	CDS	22535035	22535381	.	+	0	Parent=Os07t0563300-01
Chr07	irgsp1_rep	CDS	22535684	22535765	.	+	1	Parent=Os07t0563300-01
Chr07	irgsp1_rep	CDS	22535878	22535980	.	+	0	Parent=Os07t0563300-01
Chr07	irgsp1_rep	CDS	22536585	22537383	.	+	2	Parent=Os07t0563300-01
Chr07	irgsp1_rep	CDS	22537527	22537624	.	+	1	Parent=Os07t0563300-01
Chr07	irgsp1_rep	CDS	22538102	22538275	.	+	2	Parent=Os07t0563300-01
Chr07	irgsp1_rep	CDS	22538653	22538729	.	+	2	Parent=Os07t0563300-01
Chr07	irgsp1_rep	CDS	22539211	22539606	.	+	0	Parent=Os07t0563300-01
Chr07	irgsp1_rep	CDS	22539833	22539882	.	+	0	Parent=Os07t0563300-01
Chr07	irgsp1_rep	CDS	22540232	22540345	.	+	1	Parent=Os07t0563300-01
Chr07	irgsp1_rep	CDS	22540894	22540961	.	+	1	Parent=Os07t0563300-01
Chr07	irgsp1_rep	CDS	22541721	22542280	.	+	2	Parent=Os07t0563300-01
Chr07	irgsp1_rep	three_prime_UTR	22542281	22542783	.	+	.	Parent=Os07t0563300-01
Chr07	irgsp1_rep	mRNA	22543447	22544955	.	-	.	ID=Os07t0563400-01;Name=Os07t0563400-01;Locus_id=Os07g0563400;Note=Protein of unknown function DUF761%2C plant family protein.;Transcript_evidence=AK106307 (DDBJ%2C Best hit);ORF_evidence=NP_001151066.1 (RefSeq);InterPro=Protein of unknown function DUF761%2C plant (IPR008480);NIAS_FLcDNA=002-101-C11;Expression=AK106307;TENOR=Os07t0563400-01;KEGG=Os07t0563400-01
Chr07	irgsp1_rep	five_prime_UTR	22544830	22544955	.	-	.	Parent=Os07t0563400-01
Chr07	irgsp1_rep	CDS	22544226	22544829	.	-	0	Parent=Os07t0563400-01
Chr07	irgsp1_rep	CDS	22543737	22544134	.	-	2	Parent=Os07t0563400-01
Chr07	irgsp1_rep	three_prime_UTR	22543447	22543736	.	-	.	Parent=Os07t0563400-01
Chr07	irgsp1_rep	mRNA	22544636	22545103	.	+	.	ID=Os07t0563500-00;Name=Os07t0563500-00;Locus_id=Os07g0563500;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os07t0563500-00
Chr07	irgsp1_rep	CDS	22544636	22545103	.	+	0	Parent=Os07t0563500-00
Chr07	irgsp1_rep	mRNA	22560499	22564384	.	+	.	ID=Os07t0563600-01;Name=Os07t0563600-01;Locus_id=Os07g0563600;Note=FAR1 domain containing protein.;Transcript_evidence=AK067575 (DDBJ%2C Best hit);ORF_evidence=B9FXX9 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=FAR1 DNA binding domain (IPR004330),Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);NIAS_FLcDNA=J013110M05;Expression=AK067575;TENOR=Os07t0563600-01;KEGG=Os07t0563600-01
Chr07	irgsp1_rep	five_prime_UTR	22560499	22560728	.	+	.	Parent=Os07t0563600-01
Chr07	irgsp1_rep	five_prime_UTR	22561062	22561143	.	+	.	Parent=Os07t0563600-01
Chr07	irgsp1_rep	CDS	22561144	22561389	.	+	0	Parent=Os07t0563600-01
Chr07	irgsp1_rep	CDS	22561504	22563916	.	+	0	Parent=Os07t0563600-01
Chr07	irgsp1_rep	CDS	22564004	22564056	.	+	2	Parent=Os07t0563600-01
Chr07	irgsp1_rep	three_prime_UTR	22564057	22564384	.	+	.	Parent=Os07t0563600-01
Chr07	irgsp1_rep	mRNA	22565757	22571505	.	+	.	ID=Os07t0563700-01;Name=Os07t0563700-01;Locus_id=Os07g0563700;RAP-DB Gene Symbol Synonym(s)=CUR1;RAP-DB Gene Name Synonym(s)=CURLED LATER1;CGSNL Gene Symbol=CUR1;CGSNL Gene Name=CURLED LATER 1;Oryzabase Gene Symbol Synonym(s)=OsCUR1;Oryzabase Gene Name Synonym(s)=curled later1%2C largest subunit of Elongator complex;Note=Yeast ELP1-like protein%2C the largest subunit of Elongator%2C Leaf development%2C Meristem function;Transcript_evidence=AK121078;ORF_evidence=Q0D5G1;GO=Biological Process: tRNA wobble uridine modification (GO:0002098),Molecular Function: protein binding (GO:0005515),Cellular Component: Elongator holoenzyme complex (GO:0033588);InterPro=WD40/YVTN repeat-like-containing domain superfamily (IPR015943),Elongator complex protein 1 (IPR006849);NIAS_FLcDNA=J023062J19;Manual Curation=July 13%2C 2020;Literature_PMID=32652697;Oryzabase=23741;Expression=AK121078;TENOR=Os07t0563700-01;KEGG=Os07t0563700-01
Chr07	irgsp1_rep	five_prime_UTR	22565757	22565891	.	+	.	Parent=Os07t0563700-01
Chr07	irgsp1_rep	CDS	22565892	22566053	.	+	0	Parent=Os07t0563700-01
Chr07	irgsp1_rep	CDS	22566730	22567044	.	+	0	Parent=Os07t0563700-01
Chr07	irgsp1_rep	CDS	22567118	22570212	.	+	0	Parent=Os07t0563700-01
Chr07	irgsp1_rep	CDS	22570391	22570489	.	+	1	Parent=Os07t0563700-01
Chr07	irgsp1_rep	CDS	22570610	22570954	.	+	1	Parent=Os07t0563700-01
Chr07	irgsp1_rep	CDS	22571067	22571082	.	+	1	Parent=Os07t0563700-01
Chr07	irgsp1_rep	three_prime_UTR	22571083	22571505	.	+	.	Parent=Os07t0563700-01
Chr07	irgsp1_rep	mRNA	22573059	22577904	.	-	.	ID=Os07t0563800-01;Name=Os07t0563800-01;Locus_id=Os07g0563800;Note=Similar to ARF GAP-like zinc finger-containing protein ZIGA3.;Transcript_evidence=AK067240 (DDBJ%2C Best hit);ORF_evidence=B6TIN9 (UniProt);GO=Biological Process: regulation of ARF GTPase activity (GO:0032312),Molecular Function: ARF GTPase activator activity (GO:0008060),Molecular Function: zinc ion binding (GO:0008270);InterPro=Arf GTPase activating protein (IPR001164);NIAS_FLcDNA=J013096N21;TENOR=Os07t0563800-01
Chr07	irgsp1_rep	five_prime_UTR	22577630	22577904	.	-	.	Parent=Os07t0563800-01
Chr07	irgsp1_rep	CDS	22577579	22577629	.	-	0	Parent=Os07t0563800-01
Chr07	irgsp1_rep	CDS	22576945	22577003	.	-	0	Parent=Os07t0563800-01
Chr07	irgsp1_rep	CDS	22576391	22576481	.	-	1	Parent=Os07t0563800-01
Chr07	irgsp1_rep	CDS	22575500	22575554	.	-	0	Parent=Os07t0563800-01
Chr07	irgsp1_rep	CDS	22575307	22575397	.	-	2	Parent=Os07t0563800-01
Chr07	irgsp1_rep	CDS	22574564	22574759	.	-	1	Parent=Os07t0563800-01
Chr07	irgsp1_rep	CDS	22573725	22573953	.	-	0	Parent=Os07t0563800-01
Chr07	irgsp1_rep	CDS	22573387	22573565	.	-	2	Parent=Os07t0563800-01
Chr07	irgsp1_rep	CDS	22573059	22573281	.	-	0	Parent=Os07t0563800-01
Chr07	irgsp1_rep	mRNA	22572135	22577904	.	-	.	ID=Os07t0563800-02;Name=Os07t0563800-02;Locus_id=Os07g0563800;Note=Arf GTPase activating protein family protein.;Transcript_evidence=AK068892 (DDBJ%2C Best hit);ORF_evidence=B6TIN9 (UniProt);GO=Biological Process: regulation of ARF GTPase activity (GO:0032312),Molecular Function: ARF GTPase activator activity (GO:0008060),Molecular Function: zinc ion binding (GO:0008270);InterPro=Arf GTPase activating protein (IPR001164);NIAS_FLcDNA=J023001G22;Expression=AK068892;TENOR=Os07t0563800-02;KEGG=Os07t0563800-02
Chr07	irgsp1_rep	five_prime_UTR	22577630	22577904	.	-	.	Parent=Os07t0563800-02
Chr07	irgsp1_rep	CDS	22577579	22577629	.	-	0	Parent=Os07t0563800-02
Chr07	irgsp1_rep	CDS	22576945	22577003	.	-	0	Parent=Os07t0563800-02
Chr07	irgsp1_rep	CDS	22576391	22576481	.	-	1	Parent=Os07t0563800-02
Chr07	irgsp1_rep	CDS	22575500	22575554	.	-	0	Parent=Os07t0563800-02
Chr07	irgsp1_rep	CDS	22575307	22575397	.	-	2	Parent=Os07t0563800-02
Chr07	irgsp1_rep	CDS	22574564	22574759	.	-	1	Parent=Os07t0563800-02
Chr07	irgsp1_rep	CDS	22573725	22573953	.	-	0	Parent=Os07t0563800-02
Chr07	irgsp1_rep	CDS	22573387	22573565	.	-	2	Parent=Os07t0563800-02
Chr07	irgsp1_rep	CDS	22573012	22573281	.	-	0	Parent=Os07t0563800-02
Chr07	irgsp1_rep	CDS	22572879	22572934	.	-	0	Parent=Os07t0563800-02
Chr07	irgsp1_rep	CDS	22572585	22572738	.	-	1	Parent=Os07t0563800-02
Chr07	irgsp1_rep	three_prime_UTR	22572135	22572584	.	-	.	Parent=Os07t0563800-02
Chr07	irgsp1_rep	mRNA	22572317	22577671	.	-	.	ID=Os07t0563800-03;Name=Os07t0563800-03;Locus_id=Os07g0563800;Note=Arf GTPase activating protein family protein.;Transcript_evidence=AK067125 (DDBJ%2C Best hit);ORF_evidence=B6TIN9 (UniProt);GO=Biological Process: regulation of ARF GTPase activity (GO:0032312),Molecular Function: ARF GTPase activator activity (GO:0008060),Molecular Function: zinc ion binding (GO:0008270);InterPro=Arf GTPase activating protein (IPR001164);NIAS_FLcDNA=J013098J09;Expression=AK067125;TENOR=Os07t0563800-03;KEGG=Os07t0563800-03
Chr07	irgsp1_rep	five_prime_UTR	22577630	22577671	.	-	.	Parent=Os07t0563800-03
Chr07	irgsp1_rep	CDS	22577579	22577629	.	-	0	Parent=Os07t0563800-03
Chr07	irgsp1_rep	CDS	22576945	22577003	.	-	0	Parent=Os07t0563800-03
Chr07	irgsp1_rep	CDS	22576391	22576481	.	-	1	Parent=Os07t0563800-03
Chr07	irgsp1_rep	CDS	22575500	22575554	.	-	0	Parent=Os07t0563800-03
Chr07	irgsp1_rep	CDS	22575307	22575397	.	-	2	Parent=Os07t0563800-03
Chr07	irgsp1_rep	CDS	22574564	22574759	.	-	1	Parent=Os07t0563800-03
Chr07	irgsp1_rep	CDS	22573725	22573953	.	-	0	Parent=Os07t0563800-03
Chr07	irgsp1_rep	CDS	22573387	22573565	.	-	2	Parent=Os07t0563800-03
Chr07	irgsp1_rep	CDS	22573012	22573281	.	-	0	Parent=Os07t0563800-03
Chr07	irgsp1_rep	CDS	22572879	22572934	.	-	0	Parent=Os07t0563800-03
Chr07	irgsp1_rep	CDS	22572585	22572738	.	-	1	Parent=Os07t0563800-03
Chr07	irgsp1_rep	three_prime_UTR	22572317	22572584	.	-	.	Parent=Os07t0563800-03
Chr07	irgsp1_rep	mRNA	22572158	22575335	.	-	.	ID=Os07t0563800-04;Name=Os07t0563800-04;Locus_id=Os07g0563800;Note=Similar to ARF GAP-like zinc finger-containing protein ZIGA3.;Transcript_evidence=AK059690 (DDBJ%2C Best hit);ORF_evidence=B6TIN9 (UniProt);NIAS_FLcDNA=001-032-B02;Expression=AK059690;TENOR=Os07t0563800-04;KEGG=Os07t0563800-04
Chr07	irgsp1_rep	CDS	22575307	22575335	.	-	0	Parent=Os07t0563800-04
Chr07	irgsp1_rep	CDS	22574564	22574759	.	-	1	Parent=Os07t0563800-04
Chr07	irgsp1_rep	CDS	22573725	22573953	.	-	0	Parent=Os07t0563800-04
Chr07	irgsp1_rep	CDS	22573387	22573565	.	-	2	Parent=Os07t0563800-04
Chr07	irgsp1_rep	CDS	22573012	22573281	.	-	0	Parent=Os07t0563800-04
Chr07	irgsp1_rep	CDS	22572879	22572934	.	-	0	Parent=Os07t0563800-04
Chr07	irgsp1_rep	CDS	22572585	22572738	.	-	1	Parent=Os07t0563800-04
Chr07	irgsp1_rep	three_prime_UTR	22572158	22572584	.	-	.	Parent=Os07t0563800-04
Chr07	irgsp1_rep	mRNA	22590906	22594640	.	+	.	ID=Os07t0564000-01;Name=Os07t0564000-01;Locus_id=Os07g0564000;Note=Conserved hypothetical protein.;Transcript_evidence=AK069806 (DDBJ%2C Best hit);ORF_evidence=B8B7G5 (UniProt);NIAS_FLcDNA=J023030P11;Expression=AK069806;TENOR=Os07t0564000-01;KEGG=Os07t0564000-01
Chr07	irgsp1_rep	five_prime_UTR	22590906	22590930	.	+	.	Parent=Os07t0564000-01
Chr07	irgsp1_rep	CDS	22590931	22591035	.	+	0	Parent=Os07t0564000-01
Chr07	irgsp1_rep	CDS	22591456	22591620	.	+	0	Parent=Os07t0564000-01
Chr07	irgsp1_rep	CDS	22591948	22592139	.	+	0	Parent=Os07t0564000-01
Chr07	irgsp1_rep	CDS	22592693	22592771	.	+	0	Parent=Os07t0564000-01
Chr07	irgsp1_rep	CDS	22592862	22592986	.	+	2	Parent=Os07t0564000-01
Chr07	irgsp1_rep	CDS	22593154	22593235	.	+	0	Parent=Os07t0564000-01
Chr07	irgsp1_rep	CDS	22593449	22593510	.	+	2	Parent=Os07t0564000-01
Chr07	irgsp1_rep	CDS	22593941	22594357	.	+	0	Parent=Os07t0564000-01
Chr07	irgsp1_rep	three_prime_UTR	22594358	22594640	.	+	.	Parent=Os07t0564000-01
Chr07	irgsp1_rep	mRNA	22597656	22599343	.	+	.	ID=Os07t0564100-01;Name=Os07t0564100-01;Locus_id=Os07g0564100;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK107291 (DDBJ%2C Best hit);ORF_evidence=NP_001148465.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=002-126-B11;Expression=AK107291;TENOR=Os07t0564100-01;KEGG=Os07t0564100-01
Chr07	irgsp1_rep	five_prime_UTR	22597656	22597722	.	+	.	Parent=Os07t0564100-01
Chr07	irgsp1_rep	CDS	22597723	22599168	.	+	0	Parent=Os07t0564100-01
Chr07	irgsp1_rep	three_prime_UTR	22599169	22599343	.	+	.	Parent=Os07t0564100-01
Chr07	irgsp1_rep	mRNA	22597723	22599131	.	-	.	ID=Os07t0564150-00;Name=Os07t0564150-00;Locus_id=Os07g0564150;Note=Hypothetical gene.;Transcript_evidence=EU956579 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0564150-00
Chr07	irgsp1_rep	five_prime_UTR	22599130	22599131	.	-	.	Parent=Os07t0564150-00
Chr07	irgsp1_rep	CDS	22597723	22599129	.	-	0	Parent=Os07t0564150-00
Chr07	irgsp1_rep	mRNA	22601776	22602372	.	-	.	ID=Os07t0564200-01;Name=Os07t0564200-01;Locus_id=Os07g0564200;Note=Conserved hypothetical protein.;Transcript_evidence=AK072771 (DDBJ%2C Best hit);ORF_evidence=A2YMP3 (UniProt);NIAS_FLcDNA=J023140K04;Expression=AK072771;TENOR=Os07t0564200-01;KEGG=Os07t0564200-01
Chr07	irgsp1_rep	five_prime_UTR	22602296	22602372	.	-	.	Parent=Os07t0564200-01
Chr07	irgsp1_rep	CDS	22602065	22602295	.	-	0	Parent=Os07t0564200-01
Chr07	irgsp1_rep	three_prime_UTR	22601776	22602064	.	-	.	Parent=Os07t0564200-01
Chr07	irgsp1_rep	mRNA	22619086	22621247	.	+	.	ID=Os07t0564500-01;Name=Os07t0564500-01;Locus_id=Os07g0564500;Oryzabase Gene Name Synonym(s)=Pyridine nucleotide-disulphide oxidoreductase (NADH dehydrogenase-like);Note=Pyridine nucleotide-disulphide oxidoreductase%2C NAD-binding region domain containing protein.;Transcript_evidence=AK121213 (DDBJ%2C Best hit);ORF_evidence=NP_563783.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Pyridine nucleotide-disulphide oxidoreductase%2C NAD-binding domain (IPR001327),Pyridine nucleotide-disulphide oxidoreductase%2C FAD/NAD(P)-binding domain (IPR023753);NIAS_FLcDNA=J023089K20;Oryzabase=20458;Expression=AK121213;TENOR=Os07t0564500-01;KEGG=Os07t0564500-01 (EC:1.6.99.3)
Chr07	irgsp1_rep	five_prime_UTR	22619086	22619198	.	+	.	Parent=Os07t0564500-01
Chr07	irgsp1_rep	CDS	22619199	22620042	.	+	0	Parent=Os07t0564500-01
Chr07	irgsp1_rep	CDS	22620145	22620371	.	+	2	Parent=Os07t0564500-01
Chr07	irgsp1_rep	CDS	22620471	22621088	.	+	0	Parent=Os07t0564500-01
Chr07	irgsp1_rep	three_prime_UTR	22621089	22621247	.	+	.	Parent=Os07t0564500-01
Chr07	irgsp1_rep	mRNA	22624065	22625984	.	+	.	ID=Os07t0564533-00;Name=Os07t0564533-00;Locus_id=Os07g0564533;Note=Similar to HAT family dimerisation domain containing protein.;Transcript_evidence=AK288170 (DDBJ%2C Secondary hit);ORF_evidence=Q53RM1 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein dimerization activity (GO:0046983);InterPro=HAT dimerisation (IPR008906),Ribonuclease H-like (IPR012337);TENOR=Os07t0564533-00;KEGG=Os07t0564533-00
Chr07	irgsp1_rep	five_prime_UTR	22624065	22624066	.	+	.	Parent=Os07t0564533-00
Chr07	irgsp1_rep	CDS	22624067	22624669	.	+	0	Parent=Os07t0564533-00
Chr07	irgsp1_rep	three_prime_UTR	22624670	22625984	.	+	.	Parent=Os07t0564533-00
Chr07	irgsp1_rep	mRNA	22627181	22627603	.	+	.	ID=Os07t0564566-00;Name=Os07t0564566-00;Locus_id=Os07g0564566;Note=Non-protein coding transcript.;Transcript_evidence=CU406694 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os07t0564566-00
Chr07	irgsp1_rep	exon	22627181	22627603	.	+	.	Parent=Os07t0564566-00
Chr07	irgsp1_rep	mRNA	22627696	22632257	.	-	.	ID=Os07t0564600-01;Name=Os07t0564600-01;Locus_id=Os07g0564600;CGSNL Gene Symbol=SCAMP1;CGSNL Gene Name=SECRETORY CARRIER MEMBRANE PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=Scamp1%2C OsSCAMP1;Oryzabase Gene Name Synonym(s)=rice (Oryza sativa) homolog of animal SCAMP1%2C secretory carrier-associated membrane protein 1;Note=Similar to Secretory carrier membrane protein.;Transcript_evidence=AK102110 (DDBJ%2C Best hit);ORF_evidence=Q8H5X5 (UniProt);GO=Biological Process: protein transport (GO:0015031),Cellular Component: integral to membrane (GO:0016021);InterPro=SCAMP (IPR007273);NIAS_FLcDNA=J033084E14;Oryzabase=7475;Expression=AK102110;TENOR=Os07t0564600-01;KEGG=Os07t0564600-01
Chr07	irgsp1_rep	five_prime_UTR	22631958	22632257	.	-	.	Parent=Os07t0564600-01
Chr07	irgsp1_rep	CDS	22631901	22631957	.	-	0	Parent=Os07t0564600-01
Chr07	irgsp1_rep	CDS	22631493	22631555	.	-	0	Parent=Os07t0564600-01
Chr07	irgsp1_rep	CDS	22631257	22631364	.	-	0	Parent=Os07t0564600-01
Chr07	irgsp1_rep	CDS	22631068	22631130	.	-	0	Parent=Os07t0564600-01
Chr07	irgsp1_rep	CDS	22630722	22630755	.	-	0	Parent=Os07t0564600-01
Chr07	irgsp1_rep	CDS	22630015	22630137	.	-	2	Parent=Os07t0564600-01
Chr07	irgsp1_rep	CDS	22629535	22629597	.	-	2	Parent=Os07t0564600-01
Chr07	irgsp1_rep	CDS	22629352	22629445	.	-	2	Parent=Os07t0564600-01
Chr07	irgsp1_rep	CDS	22629229	22629274	.	-	1	Parent=Os07t0564600-01
Chr07	irgsp1_rep	CDS	22629071	22629138	.	-	0	Parent=Os07t0564600-01
Chr07	irgsp1_rep	CDS	22628557	22628605	.	-	1	Parent=Os07t0564600-01
Chr07	irgsp1_rep	CDS	22628335	22628400	.	-	0	Parent=Os07t0564600-01
Chr07	irgsp1_rep	CDS	22628051	22628137	.	-	0	Parent=Os07t0564600-01
Chr07	irgsp1_rep	three_prime_UTR	22627696	22628050	.	-	.	Parent=Os07t0564600-01
Chr07	irgsp1_rep	mRNA	22627874	22632043	.	-	.	ID=Os07t0564600-02;Name=Os07t0564600-02;Locus_id=Os07g0564600;CGSNL Gene Symbol=SCAMP1;CGSNL Gene Name=SECRETORY CARRIER MEMBRANE PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=Scamp1%2C OsSCAMP1;Oryzabase Gene Name Synonym(s)=rice (Oryza sativa) homolog of animal SCAMP1%2C secretory carrier-associated membrane protein 1;Note=Similar to Secretory carrier membrane protein.;Transcript_evidence=AK061125 (DDBJ%2C Best hit);ORF_evidence=Q8H5X5 (UniProt);GO=Biological Process: protein transport (GO:0015031),Cellular Component: integral to membrane (GO:0016021);InterPro=SCAMP (IPR007273);NIAS_FLcDNA=006-207-G10;Oryzabase=7475;Expression=AK061125;TENOR=Os07t0564600-02;KEGG=Os07t0564600-02
Chr07	irgsp1_rep	five_prime_UTR	22631958	22632043	.	-	.	Parent=Os07t0564600-02
Chr07	irgsp1_rep	CDS	22631901	22631957	.	-	0	Parent=Os07t0564600-02
Chr07	irgsp1_rep	CDS	22631493	22631555	.	-	0	Parent=Os07t0564600-02
Chr07	irgsp1_rep	CDS	22631257	22631364	.	-	0	Parent=Os07t0564600-02
Chr07	irgsp1_rep	CDS	22631068	22631130	.	-	0	Parent=Os07t0564600-02
Chr07	irgsp1_rep	CDS	22630722	22630755	.	-	0	Parent=Os07t0564600-02
Chr07	irgsp1_rep	CDS	22630015	22630137	.	-	2	Parent=Os07t0564600-02
Chr07	irgsp1_rep	CDS	22629535	22629597	.	-	2	Parent=Os07t0564600-02
Chr07	irgsp1_rep	CDS	22629352	22629445	.	-	2	Parent=Os07t0564600-02
Chr07	irgsp1_rep	CDS	22629229	22629274	.	-	1	Parent=Os07t0564600-02
Chr07	irgsp1_rep	CDS	22629071	22629138	.	-	0	Parent=Os07t0564600-02
Chr07	irgsp1_rep	CDS	22628557	22628605	.	-	1	Parent=Os07t0564600-02
Chr07	irgsp1_rep	CDS	22628335	22628400	.	-	0	Parent=Os07t0564600-02
Chr07	irgsp1_rep	CDS	22628051	22628137	.	-	0	Parent=Os07t0564600-02
Chr07	irgsp1_rep	three_prime_UTR	22627874	22628050	.	-	.	Parent=Os07t0564600-02
Chr07	irgsp1_rep	mRNA	22634760	22637290	.	-	.	ID=Os07t0564700-01;Name=Os07t0564700-01;Locus_id=Os07g0564700;Note=Similar to ATMIN7 (ARABIDOPSIS THALIANA HOPM INTERACTOR 7)%3B guanyl-nucleotide exchange factor/ protein binding.;Transcript_evidence=AK059018 (DDBJ%2C Best hit);ORF_evidence=NP_189916.4 (RefSeq);NIAS_FLcDNA=001-021-B01;TENOR=Os07t0564700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	22637290	22637290	.	-	.	Parent=Os07t0564700-01
Chr07	irgsp1_rep	CDS	22637121	22637289	.	-	0	Parent=Os07t0564700-01
Chr07	irgsp1_rep	CDS	22636856	22637019	.	-	2	Parent=Os07t0564700-01
Chr07	irgsp1_rep	CDS	22636146	22636262	.	-	0	Parent=Os07t0564700-01
Chr07	irgsp1_rep	CDS	22635920	22636056	.	-	0	Parent=Os07t0564700-01
Chr07	irgsp1_rep	CDS	22635559	22635847	.	-	1	Parent=Os07t0564700-01
Chr07	irgsp1_rep	CDS	22635352	22635447	.	-	0	Parent=Os07t0564700-01
Chr07	irgsp1_rep	CDS	22635204	22635266	.	-	0	Parent=Os07t0564700-01
Chr07	irgsp1_rep	three_prime_UTR	22634760	22635203	.	-	.	Parent=Os07t0564700-01
Chr07	irgsp1_rep	mRNA	22645162	22645899	.	-	.	ID=Os07t0564750-00;Name=Os07t0564750-00;Locus_id=Os07g0564750;Note=Conserved hypothetical protein.;Transcript_evidence=FP095875 (DDBJ);ORF_evidence=A2XXG5 (UniProt);TENOR=Os07t0564750-00
Chr07	irgsp1_rep	five_prime_UTR	22645820	22645899	.	-	.	Parent=Os07t0564750-00
Chr07	irgsp1_rep	CDS	22645543	22645819	.	-	0	Parent=Os07t0564750-00
Chr07	irgsp1_rep	CDS	22645162	22645409	.	-	2	Parent=Os07t0564750-00
Chr07	irgsp1_rep	mRNA	22648366	22654350	.	-	.	ID=Os07t0564800-01;Name=Os07t0564800-01;Locus_id=Os07g0564800;Note=Protein of unknown function DUF707 family protein.;Transcript_evidence=AK100860 (DDBJ%2C Best hit);ORF_evidence=Q8H767 (UniProt);InterPro=Protein of unknown function DUF707 (IPR007877);NIAS_FLcDNA=J023123N13;Expression=AK100860;TENOR=Os07t0564800-01;KEGG=Os07t0564800-01
Chr07	irgsp1_rep	five_prime_UTR	22654136	22654350	.	-	.	Parent=Os07t0564800-01
Chr07	irgsp1_rep	five_prime_UTR	22653398	22653497	.	-	.	Parent=Os07t0564800-01
Chr07	irgsp1_rep	five_prime_UTR	22653250	22653279	.	-	.	Parent=Os07t0564800-01
Chr07	irgsp1_rep	CDS	22653160	22653249	.	-	0	Parent=Os07t0564800-01
Chr07	irgsp1_rep	CDS	22653049	22653084	.	-	0	Parent=Os07t0564800-01
Chr07	irgsp1_rep	CDS	22652799	22652933	.	-	0	Parent=Os07t0564800-01
Chr07	irgsp1_rep	CDS	22652545	22652628	.	-	0	Parent=Os07t0564800-01
Chr07	irgsp1_rep	CDS	22652363	22652481	.	-	0	Parent=Os07t0564800-01
Chr07	irgsp1_rep	CDS	22652115	22652216	.	-	1	Parent=Os07t0564800-01
Chr07	irgsp1_rep	CDS	22651678	22651794	.	-	1	Parent=Os07t0564800-01
Chr07	irgsp1_rep	CDS	22651548	22651601	.	-	1	Parent=Os07t0564800-01
Chr07	irgsp1_rep	CDS	22651275	22651341	.	-	1	Parent=Os07t0564800-01
Chr07	irgsp1_rep	CDS	22650447	22650500	.	-	0	Parent=Os07t0564800-01
Chr07	irgsp1_rep	CDS	22649600	22649686	.	-	0	Parent=Os07t0564800-01
Chr07	irgsp1_rep	CDS	22649101	22649166	.	-	0	Parent=Os07t0564800-01
Chr07	irgsp1_rep	CDS	22648977	22649006	.	-	0	Parent=Os07t0564800-01
Chr07	irgsp1_rep	CDS	22648559	22648690	.	-	0	Parent=Os07t0564800-01
Chr07	irgsp1_rep	three_prime_UTR	22648366	22648558	.	-	.	Parent=Os07t0564800-01
Chr07	irgsp1_rep	mRNA	22652361	22653281	.	+	.	ID=Os07t0564901-00;Name=Os07t0564901-00;Locus_id=Os07g0564901;Note=Non-protein coding transcript.;Transcript_evidence=BT086289 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0564901-00
Chr07	irgsp1_rep	exon	22652361	22652495	.	+	.	Parent=Os07t0564901-00
Chr07	irgsp1_rep	exon	22652734	22652924	.	+	.	Parent=Os07t0564901-00
Chr07	irgsp1_rep	exon	22653105	22653281	.	+	.	Parent=Os07t0564901-00
Chr07	irgsp1_rep	mRNA	22654667	22656588	.	-	.	ID=Os07t0565000-01;Name=Os07t0565000-01;Locus_id=Os07g0565000;Note=Similar to 40S ribosomal protein S11.;Transcript_evidence=AK121056 (DDBJ%2C Best hit);ORF_evidence=NP_001105562.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S17 (IPR000266),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),Ribosomal protein S17%2C archaeal (IPR019978),Ribosomal protein S17%2C conserved site (IPR019979);NIAS_FLcDNA=J023056G18;Expression=AK121056;TENOR=Os07t0565000-01;KEGG=Os07t0565000-01
Chr07	irgsp1_rep	five_prime_UTR	22656463	22656588	.	-	.	Parent=Os07t0565000-01
Chr07	irgsp1_rep	CDS	22656451	22656462	.	-	0	Parent=Os07t0565000-01
Chr07	irgsp1_rep	CDS	22655902	22655942	.	-	0	Parent=Os07t0565000-01
Chr07	irgsp1_rep	CDS	22655714	22655814	.	-	1	Parent=Os07t0565000-01
Chr07	irgsp1_rep	CDS	22655236	22655381	.	-	2	Parent=Os07t0565000-01
Chr07	irgsp1_rep	CDS	22655086	22655174	.	-	0	Parent=Os07t0565000-01
Chr07	irgsp1_rep	CDS	22654844	22654940	.	-	1	Parent=Os07t0565000-01
Chr07	irgsp1_rep	three_prime_UTR	22654667	22654843	.	-	.	Parent=Os07t0565000-01
Chr07	irgsp1_rep	mRNA	22657270	22659266	.	-	.	ID=Os07t0565100-00;Name=Os07t0565100-00;Locus_id=Os07g0565100;Note=Similar to 40S ribosomal protein S11.;Transcript_evidence=CT833537 (DDBJ%2C Best hit);ORF_evidence=NP_001105562.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S17 (IPR000266),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),Ribosomal protein S17%2C archaeal (IPR019978),Ribosomal protein S17%2C conserved site (IPR019979);TENOR=Os07t0565100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	22659175	22659266	.	-	.	Parent=Os07t0565100-00
Chr07	irgsp1_rep	CDS	22659163	22659174	.	-	0	Parent=Os07t0565100-00
Chr07	irgsp1_rep	CDS	22658496	22658536	.	-	0	Parent=Os07t0565100-00
Chr07	irgsp1_rep	CDS	22658311	22658411	.	-	1	Parent=Os07t0565100-00
Chr07	irgsp1_rep	CDS	22657863	22658008	.	-	2	Parent=Os07t0565100-00
Chr07	irgsp1_rep	CDS	22657689	22657777	.	-	0	Parent=Os07t0565100-00
Chr07	irgsp1_rep	CDS	22657447	22657543	.	-	1	Parent=Os07t0565100-00
Chr07	irgsp1_rep	three_prime_UTR	22657270	22657446	.	-	.	Parent=Os07t0565100-00
Chr07	irgsp1_rep	mRNA	22659497	22663949	.	+	.	ID=Os07t0565200-01;Name=Os07t0565200-01;Locus_id=Os07g0565200;Note=Similar to Cell differentiation protein rcd1.;Transcript_evidence=AK106782 (DDBJ%2C Best hit);ORF_evidence=B6TRX0 (UniProt);InterPro=Cell differentiation%2C Rcd1-like (IPR007216);NIAS_FLcDNA=002-115-H08;TENOR=Os07t0565200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	22659497	22659728	.	+	.	Parent=Os07t0565200-01
Chr07	irgsp1_rep	five_prime_UTR	22659852	22659865	.	+	.	Parent=Os07t0565200-01
Chr07	irgsp1_rep	CDS	22659866	22660069	.	+	0	Parent=Os07t0565200-01
Chr07	irgsp1_rep	CDS	22660646	22660666	.	+	0	Parent=Os07t0565200-01
Chr07	irgsp1_rep	three_prime_UTR	22660667	22660789	.	+	.	Parent=Os07t0565200-01
Chr07	irgsp1_rep	three_prime_UTR	22661012	22661101	.	+	.	Parent=Os07t0565200-01
Chr07	irgsp1_rep	three_prime_UTR	22661730	22661836	.	+	.	Parent=Os07t0565200-01
Chr07	irgsp1_rep	three_prime_UTR	22662427	22662522	.	+	.	Parent=Os07t0565200-01
Chr07	irgsp1_rep	three_prime_UTR	22663122	22663312	.	+	.	Parent=Os07t0565200-01
Chr07	irgsp1_rep	three_prime_UTR	22663398	22663467	.	+	.	Parent=Os07t0565200-01
Chr07	irgsp1_rep	three_prime_UTR	22663571	22663949	.	+	.	Parent=Os07t0565200-01
Chr07	irgsp1_rep	mRNA	22666108	22670149	.	-	.	ID=Os07t0565300-01;Name=Os07t0565300-01;Locus_id=Os07g0565300;Note=Bromodomain containing protein.;Transcript_evidence=AK101955 (DDBJ%2C Best hit);ORF_evidence=A2YMP9 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Bromodomain (IPR001487),AT hook%2C DNA-binding motif (IPR017956);NIAS_FLcDNA=J033075K22;Expression=AK101955;TENOR=Os07t0565300-01;KEGG=Os07t0565300-01
Chr07	irgsp1_rep	five_prime_UTR	22670028	22670149	.	-	.	Parent=Os07t0565300-01
Chr07	irgsp1_rep	CDS	22669794	22670027	.	-	0	Parent=Os07t0565300-01
Chr07	irgsp1_rep	CDS	22669034	22669083	.	-	0	Parent=Os07t0565300-01
Chr07	irgsp1_rep	CDS	22667968	22668045	.	-	1	Parent=Os07t0565300-01
Chr07	irgsp1_rep	CDS	22667195	22667768	.	-	1	Parent=Os07t0565300-01
Chr07	irgsp1_rep	CDS	22666352	22666900	.	-	0	Parent=Os07t0565300-01
Chr07	irgsp1_rep	three_prime_UTR	22666108	22666351	.	-	.	Parent=Os07t0565300-01
Chr07	irgsp1_rep	mRNA	22666615	22669962	.	+	.	ID=Os07t0565350-00;Name=Os07t0565350-00;Locus_id=Os07g0565350;Note=Hypothetical protein.;Transcript_evidence=tplb0052b05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0565350-00
Chr07	irgsp1_rep	five_prime_UTR	22666615	22666906	.	+	.	Parent=Os07t0565350-00
Chr07	irgsp1_rep	five_prime_UTR	22667118	22667753	.	+	.	Parent=Os07t0565350-00
Chr07	irgsp1_rep	CDS	22667754	22667766	.	+	0	Parent=Os07t0565350-00
Chr07	irgsp1_rep	CDS	22667966	22668077	.	+	2	Parent=Os07t0565350-00
Chr07	irgsp1_rep	CDS	22669779	22669962	.	+	1	Parent=Os07t0565350-00
Chr07	irgsp1_rep	mRNA	22671598	22672521	.	-	.	ID=Os07t0565400-01;Name=Os07t0565400-01;Locus_id=Os07g0565400;Note=Similar to SRF8 (STRUBBELIG-RECEPTOR FAMILY 8).;Transcript_evidence=AK242465 (DDBJ%2C Best hit);ORF_evidence=NP_001119030.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J080301O04;TENOR=Os07t0565400-01;KEGG=Os07t0565400-01
Chr07	irgsp1_rep	CDS	22672454	22672521	.	-	0	Parent=Os07t0565400-01
Chr07	irgsp1_rep	CDS	22672191	22672347	.	-	1	Parent=Os07t0565400-01
Chr07	irgsp1_rep	CDS	22672035	22672121	.	-	0	Parent=Os07t0565400-01
Chr07	irgsp1_rep	three_prime_UTR	22671598	22672034	.	-	.	Parent=Os07t0565400-01
Chr07	irgsp1_rep	mRNA	22681039	22685957	.	-	.	ID=Os07t0565500-01;Name=Os07t0565500-01;Locus_id=Os07g0565500;Note=Conserved hypothetical protein.;Transcript_evidence=AK107834 (DDBJ%2C Best hit);ORF_evidence=F2DAZ7 (UniProt);NIAS_FLcDNA=002-133-H03;Oryzabase=22055;TENOR=Os07t0565500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	22685879	22685957	.	-	0	Parent=Os07t0565500-01
Chr07	irgsp1_rep	CDS	22685340	22685407	.	-	2	Parent=Os07t0565500-01
Chr07	irgsp1_rep	CDS	22681410	22681568	.	-	0	Parent=Os07t0565500-01
Chr07	irgsp1_rep	three_prime_UTR	22681039	22681409	.	-	.	Parent=Os07t0565500-01
Chr07	irgsp1_rep	mRNA	22688900	22693251	.	+	.	ID=Os07t0565600-01;Name=Os07t0565600-01;Locus_id=Os07g0565600;CGSNL Gene Symbol=CYP37;CGSNL Gene Name=CYCLOPHILIN 37;Oryzabase Gene Symbol Synonym(s)=OsCYP37%2C OsCYP37a%2C OsCYP37b;Oryzabase Gene Name Synonym(s)=cyclophilin 37;Note=Similar to predicted protein.;Transcript_evidence=AK107481 (DDBJ%2C Best hit);ORF_evidence=XP_002885091.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);InterPro=Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type (IPR002130),Cyclophilin-like (IPR015891);NIAS_FLcDNA=002-129-C02;Oryzabase=10068;Expression=AK107481;TENOR=Os07t0565600-01;KEGG=Os07t0565600-01
Chr07	irgsp1_rep	five_prime_UTR	22688900	22689082	.	+	.	Parent=Os07t0565600-01
Chr07	irgsp1_rep	CDS	22689083	22689526	.	+	0	Parent=Os07t0565600-01
Chr07	irgsp1_rep	CDS	22689615	22689704	.	+	0	Parent=Os07t0565600-01
Chr07	irgsp1_rep	CDS	22689850	22689945	.	+	0	Parent=Os07t0565600-01
Chr07	irgsp1_rep	CDS	22690064	22690171	.	+	0	Parent=Os07t0565600-01
Chr07	irgsp1_rep	CDS	22690274	22690323	.	+	0	Parent=Os07t0565600-01
Chr07	irgsp1_rep	CDS	22691535	22691637	.	+	1	Parent=Os07t0565600-01
Chr07	irgsp1_rep	CDS	22691823	22691876	.	+	0	Parent=Os07t0565600-01
Chr07	irgsp1_rep	CDS	22692121	22692276	.	+	0	Parent=Os07t0565600-01
Chr07	irgsp1_rep	CDS	22692494	22692616	.	+	0	Parent=Os07t0565600-01
Chr07	irgsp1_rep	CDS	22692842	22692891	.	+	0	Parent=Os07t0565600-01
Chr07	irgsp1_rep	CDS	22692993	22693116	.	+	1	Parent=Os07t0565600-01
Chr07	irgsp1_rep	three_prime_UTR	22693117	22693251	.	+	.	Parent=Os07t0565600-01
Chr07	irgsp1_rep	mRNA	22689012	22693282	.	+	.	ID=Os07t0565600-02;Name=Os07t0565600-02;Locus_id=Os07g0565600;CGSNL Gene Symbol=CYP37;CGSNL Gene Name=CYCLOPHILIN 37;Oryzabase Gene Symbol Synonym(s)=OsCYP37%2C OsCYP37a%2C OsCYP37b;Oryzabase Gene Name Synonym(s)=cyclophilin 37;Note=Similar to Peptidyl-prolyl cis-trans isomerase TLP38%2C chloroplast precursor (EC 5.2.1.8) (PPIase) (Rotamase) (Thylakoid lumen PPIase of 38 kDa) (p38).;Transcript_evidence=AK071983 (DDBJ%2C Best hit);ORF_evidence=XP_002885091.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);InterPro=Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type (IPR002130),Cyclophilin-like (IPR015891);NIAS_FLcDNA=J013089O03;Oryzabase=10068;Expression=AK071983;TENOR=Os07t0565600-02;KEGG=Os07t0565600-02 (EC:5.2.1.8)
Chr07	irgsp1_rep	five_prime_UTR	22689012	22689082	.	+	.	Parent=Os07t0565600-02
Chr07	irgsp1_rep	CDS	22689083	22689247	.	+	0	Parent=Os07t0565600-02
Chr07	irgsp1_rep	CDS	22689347	22689526	.	+	0	Parent=Os07t0565600-02
Chr07	irgsp1_rep	CDS	22689615	22689704	.	+	0	Parent=Os07t0565600-02
Chr07	irgsp1_rep	CDS	22689850	22689945	.	+	0	Parent=Os07t0565600-02
Chr07	irgsp1_rep	CDS	22690064	22690171	.	+	0	Parent=Os07t0565600-02
Chr07	irgsp1_rep	CDS	22690274	22690323	.	+	0	Parent=Os07t0565600-02
Chr07	irgsp1_rep	CDS	22691535	22691637	.	+	1	Parent=Os07t0565600-02
Chr07	irgsp1_rep	CDS	22691823	22691876	.	+	0	Parent=Os07t0565600-02
Chr07	irgsp1_rep	CDS	22692121	22692276	.	+	0	Parent=Os07t0565600-02
Chr07	irgsp1_rep	CDS	22692494	22692616	.	+	0	Parent=Os07t0565600-02
Chr07	irgsp1_rep	CDS	22692842	22692891	.	+	0	Parent=Os07t0565600-02
Chr07	irgsp1_rep	CDS	22692993	22693116	.	+	1	Parent=Os07t0565600-02
Chr07	irgsp1_rep	three_prime_UTR	22693117	22693282	.	+	.	Parent=Os07t0565600-02
Chr07	irgsp1_rep	mRNA	22693170	22694464	.	-	.	ID=Os07t0565700-01;Name=Os07t0565700-01;Locus_id=Os07g0565700;Note=Alpha/beta hydrolase family protein.;Transcript_evidence=AK112115 (DDBJ%2C Best hit);ORF_evidence=XP_002889847.1 (RefSeq);InterPro=Alpha/beta hydrolase fold-1 (IPR000073);NIAS_FLcDNA=001-206-E06;Expression=AK112115;TENOR=Os07t0565700-01;KEGG=Os07t0565700-01
Chr07	irgsp1_rep	five_prime_UTR	22694359	22694464	.	-	.	Parent=Os07t0565700-01
Chr07	irgsp1_rep	CDS	22693354	22694358	.	-	0	Parent=Os07t0565700-01
Chr07	irgsp1_rep	three_prime_UTR	22693170	22693353	.	-	.	Parent=Os07t0565700-01
Chr07	irgsp1_rep	mRNA	22693157	22694370	.	-	.	ID=Os07t0565700-02;Name=Os07t0565700-02;Locus_id=Os07g0565700;Note=Alpha/beta hydrolase family protein.;Transcript_evidence=AK111937 (DDBJ%2C Best hit);ORF_evidence=XP_002889847.1 (RefSeq);InterPro=Alpha/beta hydrolase fold-1 (IPR000073);NIAS_FLcDNA=001-001-E10;Expression=AK111937;TENOR=Os07t0565700-02;KEGG=Os07t0565700-02
Chr07	irgsp1_rep	five_prime_UTR	22694359	22694370	.	-	.	Parent=Os07t0565700-02
Chr07	irgsp1_rep	CDS	22693354	22694358	.	-	0	Parent=Os07t0565700-02
Chr07	irgsp1_rep	three_prime_UTR	22693157	22693353	.	-	.	Parent=Os07t0565700-02
Chr07	irgsp1_rep	mRNA	22696014	22696695	.	-	.	ID=Os07t0565800-01;Name=Os07t0565800-01;Locus_id=Os07g0565800;Note=Similar to LLA-115.;Transcript_evidence=AK062834 (DDBJ%2C Best hit);ORF_evidence=B2BA79 (UniProt);NIAS_FLcDNA=001-107-G10;Expression=AK062834;TENOR=Os07t0565800-01;KEGG=Os07t0565800-01
Chr07	irgsp1_rep	five_prime_UTR	22696603	22696695	.	-	.	Parent=Os07t0565800-01
Chr07	irgsp1_rep	CDS	22696249	22696602	.	-	0	Parent=Os07t0565800-01
Chr07	irgsp1_rep	three_prime_UTR	22696014	22696248	.	-	.	Parent=Os07t0565800-01
Chr07	irgsp1_rep	mRNA	22720629	22721233	.	-	.	ID=Os07t0566150-00;Name=Os07t0566150-00;Locus_id=Os07g0566150;Note=Hypothetical conserved gene.;Transcript_evidence=AK370483 (DDBJ);ORF_evidence=F2E2W1 (UniProt);TENOR=Os07t0566150-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	22721148	22721233	.	-	.	Parent=Os07t0566150-00
Chr07	irgsp1_rep	CDS	22720743	22721147	.	-	0	Parent=Os07t0566150-00
Chr07	irgsp1_rep	three_prime_UTR	22720629	22720742	.	-	.	Parent=Os07t0566150-00
Chr07	irgsp1_rep	mRNA	22726263	22731186	.	-	.	ID=Os07t0566200-01;Name=Os07t0566200-01;Locus_id=Os07g0566200;Oryzabase Gene Symbol Synonym(s)=OsPP2C64%2C PP2C64%2C OsPP97;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C64%2C protein phosphatase 2C 64%2C protein phosphatase 97;Note=Similar to catalytic/ protein phosphatase type 2C.;Transcript_evidence=AK069418 (DDBJ%2C Best hit);ORF_evidence=B6TT19 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J023020C19;Oryzabase=17937;Expression=AK069418;TENOR=Os07t0566200-01;KEGG=Os07t0566200-01
Chr07	irgsp1_rep	five_prime_UTR	22730840	22731186	.	-	.	Parent=Os07t0566200-01
Chr07	irgsp1_rep	CDS	22730618	22730839	.	-	0	Parent=Os07t0566200-01
Chr07	irgsp1_rep	CDS	22730244	22730507	.	-	0	Parent=Os07t0566200-01
Chr07	irgsp1_rep	CDS	22729991	22730111	.	-	0	Parent=Os07t0566200-01
Chr07	irgsp1_rep	CDS	22729682	22729905	.	-	2	Parent=Os07t0566200-01
Chr07	irgsp1_rep	CDS	22726706	22727158	.	-	0	Parent=Os07t0566200-01
Chr07	irgsp1_rep	three_prime_UTR	22726263	22726705	.	-	.	Parent=Os07t0566200-01
Chr07	irgsp1_rep	mRNA	22726709	22731088	.	-	.	ID=Os07t0566200-02;Name=Os07t0566200-02;Locus_id=Os07g0566200;Oryzabase Gene Symbol Synonym(s)=OsPP2C64%2C PP2C64%2C OsPP97;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C64%2C protein phosphatase 2C 64%2C protein phosphatase 97;Note=Similar to catalytic/ protein phosphatase type 2C.;Transcript_evidence=AK070426 (DDBJ%2C Best hit);ORF_evidence=B6TT19 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J023050K06;Oryzabase=17937;Expression=AK070426;TENOR=Os07t0566200-02;KEGG=Os07t0566200-02
Chr07	irgsp1_rep	five_prime_UTR	22730840	22731088	.	-	.	Parent=Os07t0566200-02
Chr07	irgsp1_rep	CDS	22730618	22730839	.	-	0	Parent=Os07t0566200-02
Chr07	irgsp1_rep	CDS	22730244	22730507	.	-	0	Parent=Os07t0566200-02
Chr07	irgsp1_rep	CDS	22729991	22730111	.	-	0	Parent=Os07t0566200-02
Chr07	irgsp1_rep	CDS	22729682	22729905	.	-	2	Parent=Os07t0566200-02
Chr07	irgsp1_rep	CDS	22726709	22727158	.	-	0	Parent=Os07t0566200-02
Chr07	irgsp1_rep	mRNA	22755417	22757552	.	-	.	ID=Os07t0566500-01;Name=Os07t0566500-01;Locus_id=Os07g0566500;RAP-DB Gene Symbol Synonym(s)=ONAC010;RAP-DB Gene Name Synonym(s)=NAC domain-containing protein 10;CGSNL Gene Symbol=NAC10;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 10;Oryzabase Gene Symbol Synonym(s)=ONAC010%2C ONAC10%2C OsSTA199;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 010%2C Grain Protein Content 2 homolog%2C GPC-B2 homolog%2C NAC domain-containing protein 10;Note=NAC transcription factor%2C Regulation of seed-storage protein content;Transcript_evidence=AK063406;ORF_evidence=Q8H4S4;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=NAC domain superfamily (IPR036093),NAC domain (IPR003441);NIAS_FLcDNA=001-115-A08;Manual Curation=April 28%2C 2020;Literature_PMID=30945674,22278768,15029955;Oryzabase=10355;Expression=AK063406;TENOR=Os07t0566500-01;KEGG=Os07t0566500-01
Chr07	irgsp1_rep	five_prime_UTR	22757473	22757552	.	-	.	Parent=Os07t0566500-01
Chr07	irgsp1_rep	CDS	22757247	22757472	.	-	0	Parent=Os07t0566500-01
Chr07	irgsp1_rep	CDS	22756674	22757011	.	-	2	Parent=Os07t0566500-01
Chr07	irgsp1_rep	CDS	22755876	22756589	.	-	0	Parent=Os07t0566500-01
Chr07	irgsp1_rep	three_prime_UTR	22755417	22755875	.	-	.	Parent=Os07t0566500-01
Chr07	irgsp1_rep	mRNA	22774149	22775187	.	-	.	ID=Os07t0566800-01;Name=Os07t0566800-01;Locus_id=Os07g0566800;Note=Toll-Interleukin receptor domain containing protein.;Transcript_evidence=AK108970 (DDBJ%2C Best hit);ORF_evidence=B9FXZ3 (UniProt);GO=Biological Process: signal transduction (GO:0007165),Cellular Component: intracellular (GO:0005622),Molecular Function: protein binding (GO:0005515);InterPro=Toll/interleukin-1 receptor homology (TIR) domain (IPR000157);NIAS_FLcDNA=002-153-D12;Expression=AK108970;TENOR=Os07t0566800-01;KEGG=Os07t0566800-01
Chr07	irgsp1_rep	five_prime_UTR	22774936	22775187	.	-	.	Parent=Os07t0566800-01
Chr07	irgsp1_rep	CDS	22774345	22774935	.	-	0	Parent=Os07t0566800-01
Chr07	irgsp1_rep	three_prime_UTR	22774149	22774344	.	-	.	Parent=Os07t0566800-01
Chr07	irgsp1_rep	mRNA	22779967	22784009	.	+	.	ID=Os07t0567000-00;Name=Os07t0567000-00;Locus_id=Os07g0567000;Note=Similar to Exostosin-like.;Transcript_evidence=ab initio prediction;ORF_evidence=B6SRZ8 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);TENOR=Os07t0567000-00;KEGG=Os07t0567000-00
Chr07	irgsp1_rep	CDS	22779967	22780917	.	+	0	Parent=Os07t0567000-00
Chr07	irgsp1_rep	CDS	22782676	22783041	.	+	0	Parent=Os07t0567000-00
Chr07	irgsp1_rep	CDS	22783420	22783543	.	+	0	Parent=Os07t0567000-00
Chr07	irgsp1_rep	CDS	22783900	22784009	.	+	2	Parent=Os07t0567000-00
Chr07	irgsp1_rep	mRNA	22780542	22780817	.	-	.	ID=Os07t0567025-00;Name=Os07t0567025-00;Locus_id=Os07g0567025;Note=Hypothetical protein.;Transcript_evidence=BT084467 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0567025-00
Chr07	irgsp1_rep	five_prime_UTR	22780816	22780817	.	-	.	Parent=Os07t0567025-00
Chr07	irgsp1_rep	CDS	22780542	22780815	.	-	0	Parent=Os07t0567025-00
Chr07	irgsp1_rep	mRNA	22783649	22783879	.	+	.	ID=Os07t0567050-00;Name=Os07t0567050-00;Locus_id=Os07g0567050;Note=Non-protein coding transcript.;Transcript_evidence=CT836135 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os07t0567050-00
Chr07	irgsp1_rep	exon	22783649	22783879	.	+	.	Parent=Os07t0567050-00
Chr07	irgsp1_rep	mRNA	22785161	22787418	.	+	.	ID=Os07t0567100-00;Name=Os07t0567100-00;Locus_id=Os07g0567100;CGSNL Gene Symbol=CYP51H9;CGSNL Gene Name=P-450 51H9;Oryzabase Gene Symbol Synonym(s)=OsCYP51H9;Oryzabase Gene Name Synonym(s)=CytoChrome P450 51H9;Note=Similar to CYP51G1.;Transcript_evidence=EU976345 (DDBJ);ORF_evidence=XP_002889887.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: monooxygenase activity (GO:0004497),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group IV (IPR002403),CytoChrome P450%2C conserved site (IPR017972);Oryzabase=17998;TENOR=Os07t0567100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	22785161	22785673	.	+	0	Parent=Os07t0567100-00
Chr07	irgsp1_rep	CDS	22786367	22787365	.	+	0	Parent=Os07t0567100-00
Chr07	irgsp1_rep	three_prime_UTR	22787366	22787418	.	+	.	Parent=Os07t0567100-00
Chr07	irgsp1_rep	mRNA	22791777	22798355	.	+	.	ID=Os07t0567250-00;Name=Os07t0567250-00;Locus_id=Os07g0567250;Note=Hypothetical protein.;Transcript_evidence=tplb0054h01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0567250-00
Chr07	irgsp1_rep	five_prime_UTR	22791777	22792267	.	+	.	Parent=Os07t0567250-00
Chr07	irgsp1_rep	five_prime_UTR	22793475	22793674	.	+	.	Parent=Os07t0567250-00
Chr07	irgsp1_rep	five_prime_UTR	22794479	22794617	.	+	.	Parent=Os07t0567250-00
Chr07	irgsp1_rep	five_prime_UTR	22795539	22795683	.	+	.	Parent=Os07t0567250-00
Chr07	irgsp1_rep	five_prime_UTR	22797160	22798010	.	+	.	Parent=Os07t0567250-00
Chr07	irgsp1_rep	CDS	22798011	22798355	.	+	0	Parent=Os07t0567250-00
Chr07	irgsp1_rep	mRNA	22791814	22798437	.	-	.	ID=Os07t0567300-01;Name=Os07t0567300-01;Locus_id=Os07g0567300;Note=Hypothetical conserved gene.;Transcript_evidence=AK288489 (DDBJ%2C Best hit);ORF_evidence=Q84SM4 (UniProt);GO=Cellular Component: Golgi stack (GO:0005795),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Glycosyltransferase%2C DXD sugar-binding motif (IPR007577),Alpha 1%2C4-glycosyltransferase domain (IPR007652);NIAS_FLcDNA=J090040I19;Oryzabase=15270;TENOR=Os07t0567300-01;KEGG=Os07t0567300-01
Chr07	irgsp1_rep	five_prime_UTR	22798346	22798437	.	-	.	Parent=Os07t0567300-01
Chr07	irgsp1_rep	CDS	22797168	22798345	.	-	0	Parent=Os07t0567300-01
Chr07	irgsp1_rep	CDS	22795538	22795687	.	-	1	Parent=Os07t0567300-01
Chr07	irgsp1_rep	CDS	22794479	22794616	.	-	1	Parent=Os07t0567300-01
Chr07	irgsp1_rep	CDS	22793480	22793674	.	-	1	Parent=Os07t0567300-01
Chr07	irgsp1_rep	CDS	22792085	22792271	.	-	1	Parent=Os07t0567300-01
Chr07	irgsp1_rep	three_prime_UTR	22791814	22792084	.	-	.	Parent=Os07t0567300-01
Chr07	irgsp1_rep	mRNA	22798854	22800192	.	-	.	ID=Os07t0567400-01;Name=Os07t0567400-01;Locus_id=Os07g0567400;Note=Similar to CytoChrome c6.;Transcript_evidence=AK068245 (DDBJ%2C Best hit);ORF_evidence=B6TIZ9 (UniProt);GO=Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome c domain (IPR009056);NIAS_FLcDNA=J013140D13;TENOR=Os07t0567400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	22800154	22800192	.	-	.	Parent=Os07t0567400-01
Chr07	irgsp1_rep	CDS	22799907	22800153	.	-	0	Parent=Os07t0567400-01
Chr07	irgsp1_rep	CDS	22799600	22799694	.	-	2	Parent=Os07t0567400-01
Chr07	irgsp1_rep	three_prime_UTR	22799500	22799599	.	-	.	Parent=Os07t0567400-01
Chr07	irgsp1_rep	three_prime_UTR	22799344	22799407	.	-	.	Parent=Os07t0567400-01
Chr07	irgsp1_rep	three_prime_UTR	22798854	22799253	.	-	.	Parent=Os07t0567400-01
Chr07	irgsp1_rep	mRNA	22802372	22802887	.	-	.	ID=Os07t0567500-00;Name=Os07t0567500-00;Locus_id=Os07g0567500;Note=Similar to predicted protein.;Transcript_evidence=AK373391 (DDBJ);ORF_evidence=Q84SM2 (UniProt);TENOR=Os07t0567500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	22802882	22802887	.	-	.	Parent=Os07t0567500-00
Chr07	irgsp1_rep	CDS	22802549	22802881	.	-	0	Parent=Os07t0567500-00
Chr07	irgsp1_rep	three_prime_UTR	22802372	22802548	.	-	.	Parent=Os07t0567500-00
Chr07	irgsp1_rep	mRNA	22807706	22809391	.	+	.	ID=Os07t0567700-01;Name=Os07t0567700-01;Locus_id=Os07g0567700;CGSNL Gene Symbol=GRAS35;CGSNL Gene Name=GRAS PROTEIN 35;Oryzabase Gene Symbol Synonym(s)=OsGRAS-35%2C OsGRAS35%2C GRAS-35;Oryzabase Gene Name Synonym(s)=GRAS protein 35;Note=Similar to SCARECROW.;Transcript_evidence=AK061242 (DDBJ%2C Best hit);ORF_evidence=Q6ULS4 (UniProt);InterPro=Transcription factor GRAS (IPR005202);NIAS_FLcDNA=006-211-D01;Oryzabase=22796;TENOR=Os07t0567700-01;KEGG=Os07t0567700-01
Chr07	irgsp1_rep	five_prime_UTR	22807706	22807983	.	+	.	Parent=Os07t0567700-01
Chr07	irgsp1_rep	CDS	22807984	22808106	.	+	0	Parent=Os07t0567700-01
Chr07	irgsp1_rep	CDS	22808561	22809148	.	+	0	Parent=Os07t0567700-01
Chr07	irgsp1_rep	three_prime_UTR	22809149	22809391	.	+	.	Parent=Os07t0567700-01
Chr07	irgsp1_rep	mRNA	22807717	22809297	.	+	.	ID=Os07t0567700-02;Name=Os07t0567700-02;Locus_id=Os07g0567700;CGSNL Gene Symbol=GRAS35;CGSNL Gene Name=GRAS PROTEIN 35;Oryzabase Gene Symbol Synonym(s)=OsGRAS-35%2C OsGRAS35%2C GRAS-35;Oryzabase Gene Name Synonym(s)=GRAS protein 35;Note=SCARECROW gene regulator-like protein.;Transcript_evidence=AK120140 (DDBJ%2C Best hit);ORF_evidence=B6SU23 (UniProt);InterPro=Transcription factor GRAS (IPR005202);NIAS_FLcDNA=J013027P17;Oryzabase=22796;Expression=AK120140;TENOR=Os07t0567700-02;KEGG=Os07t0567700-02
Chr07	irgsp1_rep	five_prime_UTR	22807717	22807774	.	+	.	Parent=Os07t0567700-02
Chr07	irgsp1_rep	CDS	22807775	22809148	.	+	0	Parent=Os07t0567700-02
Chr07	irgsp1_rep	three_prime_UTR	22809149	22809297	.	+	.	Parent=Os07t0567700-02
Chr07	irgsp1_rep	mRNA	22808980	22809379	.	+	.	ID=Os07t0567700-03;Name=Os07t0567700-03;Locus_id=Os07g0567700;CGSNL Gene Symbol=GRAS35;CGSNL Gene Name=GRAS PROTEIN 35;Oryzabase Gene Symbol Synonym(s)=OsGRAS-35%2C OsGRAS35%2C GRAS-35;Oryzabase Gene Name Synonym(s)=GRAS protein 35;Note=Similar to Scarecrow-like 23 (Fragment).;Transcript_evidence=AK059008 (DDBJ%2C Best hit);ORF_evidence=Q6ULS4 (UniProt);InterPro=Transcription factor GRAS (IPR005202);NIAS_FLcDNA=001-020-H08;Oryzabase=22796;Expression=AK059008;TENOR=Os07t0567700-03;KEGG=Os07t0567700-03
Chr07	irgsp1_rep	five_prime_UTR	22808980	22808980	.	+	.	Parent=Os07t0567700-03
Chr07	irgsp1_rep	CDS	22808981	22809148	.	+	0	Parent=Os07t0567700-03
Chr07	irgsp1_rep	three_prime_UTR	22809149	22809379	.	+	.	Parent=Os07t0567700-03
Chr07	irgsp1_rep	mRNA	22812068	22813186	.	-	.	ID=Os07t0567801-01;Name=Os07t0567801-01;Locus_id=Os07g0567801;Note=Conserved hypothetical protein.;Transcript_evidence=AK242924 (DDBJ%2C Best hit);ORF_evidence=NP_001172118.1 (RefSeq);NIAS_FLcDNA=J090085E04;TENOR=Os07t0567801-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	22813082	22813186	.	-	.	Parent=Os07t0567801-01
Chr07	irgsp1_rep	CDS	22812890	22813081	.	-	0	Parent=Os07t0567801-01
Chr07	irgsp1_rep	three_prime_UTR	22812068	22812889	.	-	.	Parent=Os07t0567801-01
Chr07	irgsp1_rep	mRNA	22815722	22816872	.	+	.	ID=Os07t0567900-00;Name=Os07t0567900-00;Locus_id=Os07g0567900;Note=Conserved hypothetical protein.;Transcript_evidence=FP097526 (DDBJ);ORF_evidence=B9FXZ7 (UniProt);TENOR=Os07t0567900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	22815722	22815924	.	+	0	Parent=Os07t0567900-00
Chr07	irgsp1_rep	CDS	22816786	22816831	.	+	1	Parent=Os07t0567900-00
Chr07	irgsp1_rep	three_prime_UTR	22816832	22816872	.	+	.	Parent=Os07t0567900-00
Chr07	irgsp1_rep	mRNA	22817202	22822175	.	-	.	ID=Os07t0568000-01;Name=Os07t0568000-01;Locus_id=Os07g0568000;Note=Apolipophorin III-like domain containing protein.;Transcript_evidence=AK072783 (DDBJ%2C Best hit);ORF_evidence=B8B7H7 (UniProt);InterPro=Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=J023140L20;Expression=AK072783;TENOR=Os07t0568000-01;KEGG=Os07t0568000-01
Chr07	irgsp1_rep	five_prime_UTR	22821937	22822175	.	-	.	Parent=Os07t0568000-01
Chr07	irgsp1_rep	CDS	22821832	22821936	.	-	0	Parent=Os07t0568000-01
Chr07	irgsp1_rep	CDS	22821244	22821338	.	-	0	Parent=Os07t0568000-01
Chr07	irgsp1_rep	CDS	22819898	22820936	.	-	1	Parent=Os07t0568000-01
Chr07	irgsp1_rep	CDS	22818817	22819335	.	-	0	Parent=Os07t0568000-01
Chr07	irgsp1_rep	CDS	22817861	22818049	.	-	0	Parent=Os07t0568000-01
Chr07	irgsp1_rep	CDS	22817656	22817792	.	-	0	Parent=Os07t0568000-01
Chr07	irgsp1_rep	CDS	22817312	22817549	.	-	1	Parent=Os07t0568000-01
Chr07	irgsp1_rep	three_prime_UTR	22817202	22817311	.	-	.	Parent=Os07t0568000-01
Chr07	irgsp1_rep	mRNA	22817195	22820293	.	-	.	ID=Os07t0568000-02;Name=Os07t0568000-02;Locus_id=Os07g0568000;Note=Similar to predicted protein.;Transcript_evidence=AK073639 (DDBJ%2C Best hit);ORF_evidence=B8B7H7 (UniProt);InterPro=Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=J033052N15;Expression=AK073639;TENOR=Os07t0568000-02;KEGG=Os07t0568000-02
Chr07	irgsp1_rep	CDS	22819898	22820293	.	-	0	Parent=Os07t0568000-02
Chr07	irgsp1_rep	CDS	22818817	22819335	.	-	0	Parent=Os07t0568000-02
Chr07	irgsp1_rep	CDS	22817861	22818049	.	-	0	Parent=Os07t0568000-02
Chr07	irgsp1_rep	CDS	22817656	22817792	.	-	0	Parent=Os07t0568000-02
Chr07	irgsp1_rep	CDS	22817312	22817549	.	-	1	Parent=Os07t0568000-02
Chr07	irgsp1_rep	three_prime_UTR	22817195	22817311	.	-	.	Parent=Os07t0568000-02
Chr07	irgsp1_rep	mRNA	22817211	22819236	.	-	.	ID=Os07t0568000-03;Name=Os07t0568000-03;Locus_id=Os07g0568000;Note=Similar to predicted protein.;Transcript_evidence=AK059238 (DDBJ%2C Best hit);ORF_evidence=B8B7H7 (UniProt);NIAS_FLcDNA=001-024-F03;Expression=AK059238;TENOR=Os07t0568000-03;KEGG=Os07t0568000-03
Chr07	irgsp1_rep	CDS	22818817	22819236	.	-	0	Parent=Os07t0568000-03
Chr07	irgsp1_rep	CDS	22817861	22818049	.	-	0	Parent=Os07t0568000-03
Chr07	irgsp1_rep	CDS	22817656	22817792	.	-	0	Parent=Os07t0568000-03
Chr07	irgsp1_rep	CDS	22817312	22817549	.	-	1	Parent=Os07t0568000-03
Chr07	irgsp1_rep	three_prime_UTR	22817211	22817311	.	-	.	Parent=Os07t0568000-03
Chr07	irgsp1_rep	mRNA	22817200	22822031	.	-	.	ID=Os07t0568000-04;Name=Os07t0568000-04;Locus_id=Os07g0568000;Note=Apolipophorin III-like domain containing protein.;Transcript_evidence=AK069485 (DDBJ%2C Best hit);ORF_evidence=B8B7H7 (UniProt);InterPro=Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=J023019N16;TENOR=Os07t0568000-04
Chr07	irgsp1_rep	five_prime_UTR	22821937	22822031	.	-	.	Parent=Os07t0568000-04
Chr07	irgsp1_rep	CDS	22821832	22821936	.	-	0	Parent=Os07t0568000-04
Chr07	irgsp1_rep	CDS	22821244	22821338	.	-	0	Parent=Os07t0568000-04
Chr07	irgsp1_rep	CDS	22819898	22820936	.	-	1	Parent=Os07t0568000-04
Chr07	irgsp1_rep	CDS	22818817	22819335	.	-	0	Parent=Os07t0568000-04
Chr07	irgsp1_rep	CDS	22817861	22818049	.	-	0	Parent=Os07t0568000-04
Chr07	irgsp1_rep	CDS	22817656	22817792	.	-	0	Parent=Os07t0568000-04
Chr07	irgsp1_rep	CDS	22817312	22817549	.	-	1	Parent=Os07t0568000-04
Chr07	irgsp1_rep	three_prime_UTR	22817200	22817311	.	-	.	Parent=Os07t0568000-04
Chr07	irgsp1_rep	mRNA	22826946	22831523	.	+	.	ID=Os07t0568100-01;Name=Os07t0568100-01;Locus_id=Os07g0568100;RAP-DB Gene Symbol Synonym(s)=SYMRK;RAP-DB Gene Name Synonym(s)=SYMBIOSIS LEU-RICH REPEAT RECEPTOR KINASE;CGSNL Gene Symbol=SYMRK;CGSNL Gene Name=SYMBIOSIS LEU-RICH REPEAT RECEPTOR KINASE;Oryzabase Gene Symbol Synonym(s)=OsSYMRK;Oryzabase Gene Name Synonym(s)=Symbiosis receptor kinase;Note=LRR protein kinase%2C Common symbiosis signaling (SYM) pathway;Transcript_evidence=AK099778 (Genbank);ORF_evidence=Q7F1I0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J013095J08;Manual Curation=June 5%2C 2009;Literature_PMID=19033527,18794914;Oryzabase=8215;Expression=AK099778;TENOR=Os07t0568100-01;KEGG=Os07t0568100-01
Chr07	irgsp1_rep	five_prime_UTR	22826946	22827256	.	+	.	Parent=Os07t0568100-01
Chr07	irgsp1_rep	CDS	22827257	22827356	.	+	0	Parent=Os07t0568100-01
Chr07	irgsp1_rep	CDS	22827448	22827601	.	+	2	Parent=Os07t0568100-01
Chr07	irgsp1_rep	CDS	22827773	22827844	.	+	1	Parent=Os07t0568100-01
Chr07	irgsp1_rep	CDS	22827932	22828003	.	+	1	Parent=Os07t0568100-01
Chr07	irgsp1_rep	CDS	22828178	22828246	.	+	1	Parent=Os07t0568100-01
Chr07	irgsp1_rep	CDS	22828333	22828505	.	+	1	Parent=Os07t0568100-01
Chr07	irgsp1_rep	CDS	22829036	22829256	.	+	2	Parent=Os07t0568100-01
Chr07	irgsp1_rep	CDS	22829566	22829692	.	+	0	Parent=Os07t0568100-01
Chr07	irgsp1_rep	CDS	22829763	22829831	.	+	2	Parent=Os07t0568100-01
Chr07	irgsp1_rep	CDS	22830011	22830200	.	+	2	Parent=Os07t0568100-01
Chr07	irgsp1_rep	CDS	22830368	22830500	.	+	1	Parent=Os07t0568100-01
Chr07	irgsp1_rep	CDS	22830670	22831020	.	+	0	Parent=Os07t0568100-01
Chr07	irgsp1_rep	three_prime_UTR	22831021	22831523	.	+	.	Parent=Os07t0568100-01
Chr07	irgsp1_rep	mRNA	22831863	22837235	.	-	.	ID=Os07t0568200-01;Name=Os07t0568200-01;Locus_id=Os07g0568200;CGSNL Gene Symbol=DLN187;CGSNL Gene Name=DLN REPRESSOR 187;Oryzabase Gene Symbol Synonym(s)=OsDLN187;Oryzabase Gene Name Synonym(s)=DLN repressor 187%2C DLN motif protein 187;Note=Homeodomain-related containing protein.;Transcript_evidence=AK102232 (DDBJ%2C Best hit);ORF_evidence=XP_002463045.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Homeodomain-like (IPR009057),SANT%2C eukarya (IPR017884);NIAS_FLcDNA=J033088A08;Oryzabase=23216;Expression=AK102232;TENOR=Os07t0568200-01;KEGG=Os07t0568200-01
Chr07	irgsp1_rep	five_prime_UTR	22836875	22837235	.	-	.	Parent=Os07t0568200-01
Chr07	irgsp1_rep	CDS	22835728	22835766	.	-	0	Parent=Os07t0568200-01
Chr07	irgsp1_rep	CDS	22834838	22835638	.	-	0	Parent=Os07t0568200-01
Chr07	irgsp1_rep	CDS	22832456	22834549	.	-	0	Parent=Os07t0568200-01
Chr07	irgsp1_rep	three_prime_UTR	22832441	22832455	.	-	.	Parent=Os07t0568200-01
Chr07	irgsp1_rep	three_prime_UTR	22831863	22832341	.	-	.	Parent=Os07t0568200-01
Chr07	irgsp1_rep	mRNA	22840986	22843936	.	+	.	ID=Os07t0568300-01;Name=Os07t0568300-01;Locus_id=Os07g0568300;CGSNL Gene Symbol=C3H50;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 50;Oryzabase Gene Symbol Synonym(s)=OsC3H50%2C OsTZF6%2C OsCCCH-Zn-6%2C DLN188%2C OsDLN188;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 50%2C Protein ZF%2C Tandem zinc finger protein 6%2C DLN repressor 188%2C DLN motif protein 188;Note=Similar to ZF protein (Fragment).;Transcript_evidence=AK067895 (DDBJ%2C Best hit);ORF_evidence=Q84SL2 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571),Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J013123G12;Oryzabase=8617;Expression=AK067895;TENOR=Os07t0568300-01;KEGG=Os07t0568300-01
Chr07	irgsp1_rep	five_prime_UTR	22840986	22841183	.	+	.	Parent=Os07t0568300-01
Chr07	irgsp1_rep	five_prime_UTR	22841462	22841511	.	+	.	Parent=Os07t0568300-01
Chr07	irgsp1_rep	CDS	22841512	22843485	.	+	0	Parent=Os07t0568300-01
Chr07	irgsp1_rep	three_prime_UTR	22843486	22843936	.	+	.	Parent=Os07t0568300-01
Chr07	irgsp1_rep	mRNA	22840986	22843871	.	+	.	ID=Os07t0568300-02;Name=Os07t0568300-02;Locus_id=Os07g0568300;CGSNL Gene Symbol=C3H50;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 50;Oryzabase Gene Symbol Synonym(s)=OsC3H50%2C OsTZF6%2C OsCCCH-Zn-6%2C DLN188%2C OsDLN188;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 50%2C Protein ZF%2C Tandem zinc finger protein 6%2C DLN repressor 188%2C DLN motif protein 188;Note=Similar to ZF protein (Fragment).;Transcript_evidence=AK067784 (DDBJ%2C Best hit);ORF_evidence=Q84SL2 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571),Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J013116A14;Oryzabase=8617;Expression=AK067784;TENOR=Os07t0568300-02;KEGG=Os07t0568300-02
Chr07	irgsp1_rep	five_prime_UTR	22840986	22841183	.	+	.	Parent=Os07t0568300-02
Chr07	irgsp1_rep	five_prime_UTR	22841474	22841511	.	+	.	Parent=Os07t0568300-02
Chr07	irgsp1_rep	CDS	22841512	22843485	.	+	0	Parent=Os07t0568300-02
Chr07	irgsp1_rep	three_prime_UTR	22843486	22843871	.	+	.	Parent=Os07t0568300-02
Chr07	irgsp1_rep	mRNA	22845061	22849787	.	-	.	ID=Os07t0568400-01;Name=Os07t0568400-01;Locus_id=Os07g0568400;Note=TB2/DP1 and HVA22 related protein family protein.;Transcript_evidence=AK241061 (DDBJ%2C Best hit);ORF_evidence=A2YMS5 (UniProt);InterPro=TB2/DP1/HVA22-related protein (IPR004345);NIAS_FLcDNA=J065065C05;TENOR=Os07t0568400-01;KEGG=Os07t0568400-01
Chr07	irgsp1_rep	five_prime_UTR	22849593	22849787	.	-	.	Parent=Os07t0568400-01
Chr07	irgsp1_rep	CDS	22849560	22849592	.	-	0	Parent=Os07t0568400-01
Chr07	irgsp1_rep	CDS	22848687	22848745	.	-	0	Parent=Os07t0568400-01
Chr07	irgsp1_rep	CDS	22848104	22848201	.	-	1	Parent=Os07t0568400-01
Chr07	irgsp1_rep	CDS	22847536	22847587	.	-	2	Parent=Os07t0568400-01
Chr07	irgsp1_rep	CDS	22846847	22846910	.	-	1	Parent=Os07t0568400-01
Chr07	irgsp1_rep	CDS	22846036	22846131	.	-	0	Parent=Os07t0568400-01
Chr07	irgsp1_rep	CDS	22845874	22845946	.	-	0	Parent=Os07t0568400-01
Chr07	irgsp1_rep	CDS	22845333	22845442	.	-	2	Parent=Os07t0568400-01
Chr07	irgsp1_rep	three_prime_UTR	22845061	22845332	.	-	.	Parent=Os07t0568400-01
Chr07	irgsp1_rep	mRNA	22851434	22853915	.	-	.	ID=Os07t0568500-01;Name=Os07t0568500-01;Locus_id=Os07g0568500;Note=Peptidase aspartic%2C active site domain containing protein.;Transcript_evidence=AK100091 (DDBJ%2C Best hit);ORF_evidence=B6SLR0 (UniProt);InterPro=Uncharacterised protein family Ycf60 (IPR019109);NIAS_FLcDNA=J023003J19;Expression=AK100091;TENOR=Os07t0568500-01;KEGG=Os07t0568500-01
Chr07	irgsp1_rep	five_prime_UTR	22853754	22853915	.	-	.	Parent=Os07t0568500-01
Chr07	irgsp1_rep	five_prime_UTR	22853503	22853569	.	-	.	Parent=Os07t0568500-01
Chr07	irgsp1_rep	CDS	22853325	22853502	.	-	0	Parent=Os07t0568500-01
Chr07	irgsp1_rep	CDS	22851634	22852274	.	-	2	Parent=Os07t0568500-01
Chr07	irgsp1_rep	three_prime_UTR	22851434	22851633	.	-	.	Parent=Os07t0568500-01
Chr07	irgsp1_rep	mRNA	22851357	22853892	.	-	.	ID=Os07t0568500-02;Name=Os07t0568500-02;Locus_id=Os07g0568500;Note=Peptidase aspartic%2C active site domain containing protein.;Transcript_evidence=AK109391 (DDBJ%2C Best hit);ORF_evidence=B6SLR0 (UniProt);InterPro=Uncharacterised protein family Ycf60 (IPR019109);NIAS_FLcDNA=006-211-H03;Expression=AK109391;TENOR=Os07t0568500-02;KEGG=Os07t0568500-02
Chr07	irgsp1_rep	five_prime_UTR	22853754	22853892	.	-	.	Parent=Os07t0568500-02
Chr07	irgsp1_rep	five_prime_UTR	22853503	22853540	.	-	.	Parent=Os07t0568500-02
Chr07	irgsp1_rep	CDS	22853325	22853502	.	-	0	Parent=Os07t0568500-02
Chr07	irgsp1_rep	CDS	22851634	22852274	.	-	2	Parent=Os07t0568500-02
Chr07	irgsp1_rep	three_prime_UTR	22851357	22851633	.	-	.	Parent=Os07t0568500-02
Chr07	irgsp1_rep	mRNA	22851426	22853835	.	-	.	ID=Os07t0568500-03;Name=Os07t0568500-03;Locus_id=Os07g0568500;Note=Peptidase aspartic%2C active site domain containing protein.;Transcript_evidence=AK059994 (DDBJ%2C Best hit);ORF_evidence=B6SLR0 (UniProt);InterPro=Uncharacterised protein family Ycf60 (IPR019109);NIAS_FLcDNA=006-301-E09;Expression=AK059994;TENOR=Os07t0568500-03;KEGG=Os07t0568500-03
Chr07	irgsp1_rep	five_prime_UTR	22853754	22853835	.	-	.	Parent=Os07t0568500-03
Chr07	irgsp1_rep	five_prime_UTR	22853503	22853540	.	-	.	Parent=Os07t0568500-03
Chr07	irgsp1_rep	CDS	22853325	22853502	.	-	0	Parent=Os07t0568500-03
Chr07	irgsp1_rep	CDS	22851634	22852274	.	-	2	Parent=Os07t0568500-03
Chr07	irgsp1_rep	three_prime_UTR	22851426	22851633	.	-	.	Parent=Os07t0568500-03
Chr07	irgsp1_rep	mRNA	22858595	22862573	.	-	.	ID=Os07t0568600-01;Name=Os07t0568600-01;Locus_id=Os07g0568600;CGSNL Gene Symbol=CDPK20;CGSNL Gene Name=CALCIUM-DEPENDENT PROTEIN KINASE 20;Oryzabase Gene Symbol Synonym(s)=OsCDPK20%2C OsCPK20;Oryzabase Gene Name Synonym(s)=calcium-dependent protein kinase;Note=Similar to Calcium-dependent protein kinase.;Transcript_evidence=AK068315 (DDBJ%2C Best hit);ORF_evidence=B6SKK9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Calcium-binding EF-hand (IPR002048),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),EF-hand-like domain (IPR011992),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J013149I06;Oryzabase=8071;Expression=AK068315;TENOR=Os07t0568600-01;KEGG=Os07t0568600-01 (EC:2.7.11.17)
Chr07	irgsp1_rep	five_prime_UTR	22862269	22862573	.	-	.	Parent=Os07t0568600-01
Chr07	irgsp1_rep	CDS	22861705	22862268	.	-	0	Parent=Os07t0568600-01
Chr07	irgsp1_rep	CDS	22861163	22861286	.	-	0	Parent=Os07t0568600-01
Chr07	irgsp1_rep	CDS	22860820	22860963	.	-	2	Parent=Os07t0568600-01
Chr07	irgsp1_rep	CDS	22860432	22860584	.	-	2	Parent=Os07t0568600-01
Chr07	irgsp1_rep	CDS	22860004	22860119	.	-	2	Parent=Os07t0568600-01
Chr07	irgsp1_rep	CDS	22859740	22859907	.	-	0	Parent=Os07t0568600-01
Chr07	irgsp1_rep	CDS	22859315	22859545	.	-	0	Parent=Os07t0568600-01
Chr07	irgsp1_rep	CDS	22858998	22859150	.	-	0	Parent=Os07t0568600-01
Chr07	irgsp1_rep	three_prime_UTR	22858595	22858997	.	-	.	Parent=Os07t0568600-01
Chr07	irgsp1_rep	mRNA	22858718	22861777	.	-	.	ID=Os07t0568600-02;Name=Os07t0568600-02;Locus_id=Os07g0568600;CGSNL Gene Symbol=CDPK20;CGSNL Gene Name=CALCIUM-DEPENDENT PROTEIN KINASE 20;Oryzabase Gene Symbol Synonym(s)=OsCDPK20%2C OsCPK20;Oryzabase Gene Name Synonym(s)=calcium-dependent protein kinase;Note=Similar to calcium-dependent protein kinase%2C isoform AK1.;Transcript_evidence=AK073000 (DDBJ%2C Best hit);ORF_evidence=B6SKK9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Calcium-binding EF-hand (IPR002048),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),EF-hand-like domain (IPR011992),Serine/threonine-protein kinase-like domain (IPR017442),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J023150P10;Oryzabase=8071;Expression=AK073000;TENOR=Os07t0568600-02;KEGG=Os07t0568600-02 (EC:2.7.11.17)
Chr07	irgsp1_rep	five_prime_UTR	22861777	22861777	.	-	.	Parent=Os07t0568600-02
Chr07	irgsp1_rep	CDS	22861705	22861776	.	-	0	Parent=Os07t0568600-02
Chr07	irgsp1_rep	CDS	22861163	22861286	.	-	0	Parent=Os07t0568600-02
Chr07	irgsp1_rep	CDS	22860820	22860963	.	-	2	Parent=Os07t0568600-02
Chr07	irgsp1_rep	CDS	22860432	22860584	.	-	2	Parent=Os07t0568600-02
Chr07	irgsp1_rep	CDS	22860004	22860119	.	-	2	Parent=Os07t0568600-02
Chr07	irgsp1_rep	CDS	22859740	22859907	.	-	0	Parent=Os07t0568600-02
Chr07	irgsp1_rep	CDS	22859315	22859545	.	-	0	Parent=Os07t0568600-02
Chr07	irgsp1_rep	CDS	22858998	22859150	.	-	0	Parent=Os07t0568600-02
Chr07	irgsp1_rep	three_prime_UTR	22858718	22858997	.	-	.	Parent=Os07t0568600-02
Chr07	irgsp1_rep	mRNA	22859316	22862037	.	+	.	ID=Os07t0568650-00;Name=Os07t0568650-00;Locus_id=Os07g0568650;Note=Hypothetical protein.;Transcript_evidence=tplb0061j19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0568650-00
Chr07	irgsp1_rep	five_prime_UTR	22859316	22859385	.	+	.	Parent=Os07t0568650-00
Chr07	irgsp1_rep	CDS	22859386	22859567	.	+	0	Parent=Os07t0568650-00
Chr07	irgsp1_rep	CDS	22859752	22859912	.	+	1	Parent=Os07t0568650-00
Chr07	irgsp1_rep	CDS	22860010	22860023	.	+	2	Parent=Os07t0568650-00
Chr07	irgsp1_rep	three_prime_UTR	22860024	22860140	.	+	.	Parent=Os07t0568650-00
Chr07	irgsp1_rep	three_prime_UTR	22860454	22860537	.	+	.	Parent=Os07t0568650-00
Chr07	irgsp1_rep	three_prime_UTR	22860772	22860957	.	+	.	Parent=Os07t0568650-00
Chr07	irgsp1_rep	three_prime_UTR	22861156	22861316	.	+	.	Parent=Os07t0568650-00
Chr07	irgsp1_rep	three_prime_UTR	22861738	22862037	.	+	.	Parent=Os07t0568650-00
Chr07	irgsp1_rep	mRNA	22874257	22875705	.	-	.	ID=Os07t0568700-02;Name=Os07t0568700-02;Locus_id=Os07g0568700;RAP-DB Gene Symbol Synonym(s)=FOR1%2C OsFOR1%2C Osfor1;RAP-DB Gene Name Synonym(s)=FLORAL ORGAN REGULATOR 1%2C rice floral organ regulator-1%2C Floral organ regulator 1;CGSNL Gene Symbol=FOR1;CGSNL Gene Name=FLORAL ORGAN REGULATOR 1;Oryzabase Gene Symbol Synonym(s)=OsFOR1%2C Osfor1%2C OsPGIP5%2C PGIP5;Oryzabase Gene Name Synonym(s)=rice floral organ regulator-1%2C Floral organ regulator 1%2C Polygalacturonase-inhibiting protein 5;Note=Polygalacturonase-inhibiting protein%2C Inhibitor of fungal polygalacturonase%2C Regulation of floral organ number;Transcript_evidence=AF466357 (Dongjin),AK101897,AK061685;ORF_evidence=Q8GT95;GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat domain%2C L domain-like (IPR032675),Leucine-rich repeat-containing N-terminal%2C plant-type (IPR013210),Leucine-rich repeat (IPR001611);NIAS_FLcDNA=J033070P18, 001-037-A10;Manual Curation=April 18%2C 2016;Literature_PMID=22362377,14750524;Oryzabase=6146;Expression=AK101897;TENOR=Os07t0568700-02;KEGG=Os07t0568700-02
Chr07	irgsp1_rep	five_prime_UTR	22875647	22875705	.	-	.	Parent=Os07t0568700-02
Chr07	irgsp1_rep	CDS	22874648	22875646	.	-	0	Parent=Os07t0568700-02
Chr07	irgsp1_rep	three_prime_UTR	22874257	22874647	.	-	.	Parent=Os07t0568700-02
Chr07	irgsp1_rep	mRNA	22878520	22879309	.	-	.	ID=Os07t0568800-01;Name=Os07t0568800-01;Locus_id=Os07g0568800;Note=Hypothetical protein.;Transcript_evidence=AK111260 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-180-E12;TENOR=Os07t0568800-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	22879253	22879309	.	-	.	Parent=Os07t0568800-01
Chr07	irgsp1_rep	CDS	22878662	22879252	.	-	0	Parent=Os07t0568800-01
Chr07	irgsp1_rep	three_prime_UTR	22878520	22878661	.	-	.	Parent=Os07t0568800-01
Chr07	irgsp1_rep	mRNA	22880417	22882065	.	-	.	ID=Os07t0568900-01;Name=Os07t0568900-01;Locus_id=Os07g0568900;Note=Conserved hypothetical protein.;Transcript_evidence=AK062660 (DDBJ%2C Best hit);ORF_evidence=B8B7I1 (UniProt);NIAS_FLcDNA=001-105-F04;Expression=AK062660;TENOR=Os07t0568900-01;KEGG=Os07t0568900-01
Chr07	irgsp1_rep	five_prime_UTR	22882035	22882065	.	-	.	Parent=Os07t0568900-01
Chr07	irgsp1_rep	CDS	22881758	22882034	.	-	0	Parent=Os07t0568900-01
Chr07	irgsp1_rep	CDS	22880592	22880818	.	-	2	Parent=Os07t0568900-01
Chr07	irgsp1_rep	three_prime_UTR	22880417	22880591	.	-	.	Parent=Os07t0568900-01
Chr07	irgsp1_rep	mRNA	22882250	22887066	.	+	.	ID=Os07t0569000-01;Name=Os07t0569000-01;Locus_id=Os07g0569000;Note=Conserved hypothetical protein.;Transcript_evidence=AK073915 (DDBJ%2C Best hit);ORF_evidence=B8B7I2 (UniProt);NIAS_FLcDNA=J033076M01;Expression=AK073915;TENOR=Os07t0569000-01;KEGG=Os07t0569000-01
Chr07	irgsp1_rep	five_prime_UTR	22882250	22882365	.	+	.	Parent=Os07t0569000-01
Chr07	irgsp1_rep	CDS	22882366	22882561	.	+	0	Parent=Os07t0569000-01
Chr07	irgsp1_rep	CDS	22883717	22884066	.	+	2	Parent=Os07t0569000-01
Chr07	irgsp1_rep	CDS	22884202	22886955	.	+	0	Parent=Os07t0569000-01
Chr07	irgsp1_rep	three_prime_UTR	22886956	22887066	.	+	.	Parent=Os07t0569000-01
Chr07	irgsp1_rep	mRNA	22889318	22890939	.	-	.	ID=Os07t0569100-01;Name=Os07t0569100-01;Locus_id=Os07g0569100;RAP-DB Gene Symbol Synonym(s)=REM4.1%2C OsREM4.1;RAP-DB Gene Name Synonym(s)=REMORIN 4.1%2C remorin%2C Remorin 4.1%2C remorin group 4 member 1;CGSNL Gene Symbol=REM4.1;CGSNL Gene Name=REMORIN 4.1;Oryzabase Gene Symbol Synonym(s)=OsREM4.1;Oryzabase Gene Name Synonym(s)=remorin%2C Remorin 4.1%2C remorin group 4 member 1;Note=Remorin protein%2C Coordination of interlink between abscisic acid (ABA) and brassinosteroid (BR) signaling;Transcript_evidence=AK120160,XM_015791500;ORF_evidence=Q7XII4;InterPro=Remorin%2C C-terminal (IPR005516);NIAS_FLcDNA=J013030P03;Manual Curation=July 25%2C 2016;Literature_PMID=27424498;Oryzabase=19996;Expression=AK120160;TENOR=Os07t0569100-01;KEGG=Os07t0569100-01
Chr07	irgsp1_rep	five_prime_UTR	22890793	22890939	.	-	.	Parent=Os07t0569100-01
Chr07	irgsp1_rep	CDS	22890034	22890792	.	-	0	Parent=Os07t0569100-01
Chr07	irgsp1_rep	CDS	22889746	22889937	.	-	0	Parent=Os07t0569100-01
Chr07	irgsp1_rep	three_prime_UTR	22889318	22889745	.	-	.	Parent=Os07t0569100-01
Chr07	irgsp1_rep	mRNA	22889485	22892139	.	+	.	ID=Os07t0569166-01;Name=Os07t0569166-01;Locus_id=Os07g0569166;Note=Conserved hypothetical protein.;Transcript_evidence=AK240724 (DDBJ%2C Best hit);ORF_evidence=NP_001175264.1 (RefSeq);NIAS_FLcDNA=J043027L06;TENOR=Os07t0569166-01;KEGG=Os07t0569166-01
Chr07	irgsp1_rep	five_prime_UTR	22889485	22890001	.	+	.	Parent=Os07t0569166-01
Chr07	irgsp1_rep	CDS	22890002	22890811	.	+	0	Parent=Os07t0569166-01
Chr07	irgsp1_rep	three_prime_UTR	22890812	22892139	.	+	.	Parent=Os07t0569166-01
Chr07	irgsp1_rep	mRNA	22920999	22922468	.	+	.	ID=Os07t0569500-01;Name=Os07t0569500-01;Locus_id=Os07g0569500;Note=Nicotinamide N-methyltransferase%2C putative domain containing protein.;Transcript_evidence=AK106380 (DDBJ%2C Best hit);ORF_evidence=F2DXV3 (UniProt);InterPro=Nicotinamide N-methyltransferase%2C putative (IPR019410);NIAS_FLcDNA=002-102-D10;Expression=AK106380;TENOR=Os07t0569500-01;KEGG=Os07t0569500-01
Chr07	irgsp1_rep	five_prime_UTR	22920999	22921026	.	+	.	Parent=Os07t0569500-01
Chr07	irgsp1_rep	CDS	22921027	22921827	.	+	0	Parent=Os07t0569500-01
Chr07	irgsp1_rep	three_prime_UTR	22921828	22922468	.	+	.	Parent=Os07t0569500-01
Chr07	irgsp1_rep	mRNA	22922745	22924814	.	-	.	ID=Os07t0569550-00;Name=Os07t0569550-00;Locus_id=Os07g0569550;Note=Similar to protein kinase.;Transcript_evidence=tplb0014p02 (Wheat FLcDNA);ORF_evidence=NP_001147903.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C alpha chain%2C conserved site (IPR000985),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Legume lectin%2C beta chain%2C Mn/Ca-binding site (IPR019825);TENOR=Os07t0569550-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	22922745	22924814	.	-	0	Parent=Os07t0569550-00
Chr07	irgsp1_rep	mRNA	22925654	22926972	.	-	.	ID=Os07t0569600-01;Name=Os07t0569600-01;Locus_id=Os07g0569600;Note=Chaperonin-like RbcX domain containing protein.;Transcript_evidence=AK067599 (DDBJ%2C Best hit);ORF_evidence=A3BLB7 (UniProt);InterPro=Chaperonin-like RbcX (IPR003435);NIAS_FLcDNA=J013109B01;Expression=AK067599;TENOR=Os07t0569600-01;KEGG=Os07t0569600-01
Chr07	irgsp1_rep	five_prime_UTR	22926912	22926972	.	-	.	Parent=Os07t0569600-01
Chr07	irgsp1_rep	CDS	22926672	22926911	.	-	0	Parent=Os07t0569600-01
Chr07	irgsp1_rep	CDS	22926413	22926504	.	-	0	Parent=Os07t0569600-01
Chr07	irgsp1_rep	CDS	22926213	22926270	.	-	1	Parent=Os07t0569600-01
Chr07	irgsp1_rep	CDS	22926043	22926108	.	-	0	Parent=Os07t0569600-01
Chr07	irgsp1_rep	CDS	22925829	22925954	.	-	0	Parent=Os07t0569600-01
Chr07	irgsp1_rep	three_prime_UTR	22925654	22925828	.	-	.	Parent=Os07t0569600-01
Chr07	irgsp1_rep	mRNA	22930745	22933283	.	+	.	ID=Os07t0569700-01;Name=Os07t0569700-01;Locus_id=Os07g0569700;RAP-DB Gene Symbol Synonym(s)=SAP16%2C OsSAP16;RAP-DB Gene Name Synonym(s)=STRESS ASSOCIATED PROTEIN GENE 16%2C C2H2 transcription factor%2C stress associated protein 16;CGSNL Gene Symbol=SAP16;CGSNL Gene Name=STRESS ASSOCIATED PROTEIN GENE 16;Oryzabase Gene Symbol Synonym(s)=OsSAP16;Oryzabase Gene Name Synonym(s)=C2H2 transcription factor%2C stress associated protein 16%2C stress-associated protein 16;Note=Zinc finger AN1 and C2H2 domain-containing stress-associated protein%2C Stress response%2C Regulation of the expression of stress-associated genes;Transcript_evidence=XM_015789406;ORF_evidence=Q0D5B9;GO=Molecular Function: zinc ion binding (GO:0008270),Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C AN1-type (IPR000058),Zinc finger%2C C2H2-like (IPR015880),Zinc finger%2C C2H2 (IPR007087);NIAS_FLcDNA=001-102-C06;Manual Curation=July 15%2C 2016;Literature_PMID=27303811,17033811;Oryzabase=16194;Expression=AK062388;TENOR=Os07t0569700-01;KEGG=Os07t0569700-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	22930745	22930926	.	+	.	Parent=Os07t0569700-01
Chr07	irgsp1_rep	CDS	22930927	22931025	.	+	0	Parent=Os07t0569700-01
Chr07	irgsp1_rep	CDS	22932198	22932971	.	+	0	Parent=Os07t0569700-01
Chr07	irgsp1_rep	three_prime_UTR	22932972	22933283	.	+	.	Parent=Os07t0569700-01
Chr07	irgsp1_rep	mRNA	22935622	22937578	.	+	.	ID=Os07t0569800-01;Name=Os07t0569800-01;Locus_id=Os07g0569800;Note=Similar to protein kinase.;Transcript_evidence=AK108637 (DDBJ%2C Best hit);ORF_evidence=NP_001147903.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Legume lectin%2C beta chain%2C Mn/Ca-binding site (IPR019825),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=002-147-H04;TENOR=Os07t0569800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	22935622	22935626	.	+	.	Parent=Os07t0569800-01
Chr07	irgsp1_rep	CDS	22935627	22937459	.	+	0	Parent=Os07t0569800-01
Chr07	irgsp1_rep	three_prime_UTR	22937460	22937578	.	+	.	Parent=Os07t0569800-01
Chr07	irgsp1_rep	mRNA	22939113	22954778	.	-	.	ID=Os07t0570100-01;Name=Os07t0570100-01;Locus_id=Os07g0570100;Note=Similar to predicted protein.;Transcript_evidence=AK242038 (DDBJ%2C Best hit);ORF_evidence=Q93YG9 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: catalytic activity (GO:0003824),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: metal ion binding (GO:0046872);InterPro=Peptidase M16%2C zinc-binding site (IPR001431),Peptidase M16%2C C-terminal (IPR007863),Peptidase M16%2C core (IPR011237),Metalloenzyme%2C LuxS/M16 peptidase-like%2C metal-binding (IPR011249),Peptidase M16%2C N-terminal (IPR011765);NIAS_FLcDNA=J075118I07;TENOR=Os07t0570100-01;KEGG=Os07t0570100-01 (EC:3.4.24.56)
Chr07	irgsp1_rep	five_prime_UTR	22954777	22954778	.	-	.	Parent=Os07t0570100-01
Chr07	irgsp1_rep	CDS	22954582	22954776	.	-	0	Parent=Os07t0570100-01
Chr07	irgsp1_rep	CDS	22954396	22954471	.	-	0	Parent=Os07t0570100-01
Chr07	irgsp1_rep	CDS	22952953	22953020	.	-	2	Parent=Os07t0570100-01
Chr07	irgsp1_rep	CDS	22951712	22951803	.	-	0	Parent=Os07t0570100-01
Chr07	irgsp1_rep	CDS	22951554	22951627	.	-	1	Parent=Os07t0570100-01
Chr07	irgsp1_rep	CDS	22951422	22951465	.	-	2	Parent=Os07t0570100-01
Chr07	irgsp1_rep	CDS	22950972	22951023	.	-	0	Parent=Os07t0570100-01
Chr07	irgsp1_rep	CDS	22949692	22949814	.	-	2	Parent=Os07t0570100-01
Chr07	irgsp1_rep	CDS	22949478	22949590	.	-	2	Parent=Os07t0570100-01
Chr07	irgsp1_rep	CDS	22949194	22949356	.	-	0	Parent=Os07t0570100-01
Chr07	irgsp1_rep	CDS	22947976	22948068	.	-	2	Parent=Os07t0570100-01
Chr07	irgsp1_rep	CDS	22947612	22947697	.	-	2	Parent=Os07t0570100-01
Chr07	irgsp1_rep	CDS	22946863	22946949	.	-	0	Parent=Os07t0570100-01
Chr07	irgsp1_rep	CDS	22945027	22945130	.	-	0	Parent=Os07t0570100-01
Chr07	irgsp1_rep	CDS	22944021	22944123	.	-	1	Parent=Os07t0570100-01
Chr07	irgsp1_rep	CDS	22943839	22943934	.	-	0	Parent=Os07t0570100-01
Chr07	irgsp1_rep	CDS	22943577	22943766	.	-	0	Parent=Os07t0570100-01
Chr07	irgsp1_rep	CDS	22943222	22943283	.	-	2	Parent=Os07t0570100-01
Chr07	irgsp1_rep	CDS	22941507	22941611	.	-	0	Parent=Os07t0570100-01
Chr07	irgsp1_rep	CDS	22940896	22941097	.	-	0	Parent=Os07t0570100-01
Chr07	irgsp1_rep	CDS	22940581	22940792	.	-	2	Parent=Os07t0570100-01
Chr07	irgsp1_rep	CDS	22940280	22940404	.	-	0	Parent=Os07t0570100-01
Chr07	irgsp1_rep	CDS	22940083	22940134	.	-	1	Parent=Os07t0570100-01
Chr07	irgsp1_rep	CDS	22939922	22940008	.	-	0	Parent=Os07t0570100-01
Chr07	irgsp1_rep	CDS	22939652	22939774	.	-	0	Parent=Os07t0570100-01
Chr07	irgsp1_rep	CDS	22939329	22939580	.	-	0	Parent=Os07t0570100-01
Chr07	irgsp1_rep	three_prime_UTR	22939113	22939328	.	-	.	Parent=Os07t0570100-01
Chr07	irgsp1_rep	mRNA	22955767	22972671	.	-	.	ID=Os07t0570300-01;Name=Os07t0570300-01;Locus_id=Os07g0570300;Note=Peptidase M16%2C core domain containing protein.;Transcript_evidence=AK100076 (DDBJ%2C Best hit);ORF_evidence=Q93YG9 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: catalytic activity (GO:0003824),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: metal ion binding (GO:0046872);InterPro=Peptidase M16%2C zinc-binding site (IPR001431),Peptidase M16%2C C-terminal (IPR007863),Peptidase M16%2C core (IPR011237),Metalloenzyme%2C LuxS/M16 peptidase-like%2C metal-binding (IPR011249),Peptidase M16%2C N-terminal (IPR011765);NIAS_FLcDNA=J023001F09;Expression=AK100076;TENOR=Os07t0570300-01;KEGG=Os07t0570300-01 (EC:3.4.24.56)
Chr07	irgsp1_rep	five_prime_UTR	22972532	22972671	.	-	.	Parent=Os07t0570300-01
Chr07	irgsp1_rep	CDS	22972346	22972531	.	-	0	Parent=Os07t0570300-01
Chr07	irgsp1_rep	CDS	22972151	22972226	.	-	0	Parent=Os07t0570300-01
Chr07	irgsp1_rep	CDS	22970145	22970212	.	-	2	Parent=Os07t0570300-01
Chr07	irgsp1_rep	CDS	22969404	22969495	.	-	0	Parent=Os07t0570300-01
Chr07	irgsp1_rep	CDS	22969246	22969319	.	-	1	Parent=Os07t0570300-01
Chr07	irgsp1_rep	CDS	22969118	22969161	.	-	2	Parent=Os07t0570300-01
Chr07	irgsp1_rep	CDS	22968052	22968103	.	-	0	Parent=Os07t0570300-01
Chr07	irgsp1_rep	CDS	22966568	22966690	.	-	2	Parent=Os07t0570300-01
Chr07	irgsp1_rep	CDS	22966365	22966477	.	-	2	Parent=Os07t0570300-01
Chr07	irgsp1_rep	CDS	22966090	22966252	.	-	0	Parent=Os07t0570300-01
Chr07	irgsp1_rep	CDS	22964989	22965081	.	-	2	Parent=Os07t0570300-01
Chr07	irgsp1_rep	CDS	22964817	22964902	.	-	2	Parent=Os07t0570300-01
Chr07	irgsp1_rep	CDS	22963818	22963904	.	-	0	Parent=Os07t0570300-01
Chr07	irgsp1_rep	CDS	22962696	22962799	.	-	0	Parent=Os07t0570300-01
Chr07	irgsp1_rep	CDS	22961648	22961750	.	-	1	Parent=Os07t0570300-01
Chr07	irgsp1_rep	CDS	22961466	22961561	.	-	0	Parent=Os07t0570300-01
Chr07	irgsp1_rep	CDS	22961204	22961393	.	-	0	Parent=Os07t0570300-01
Chr07	irgsp1_rep	CDS	22960843	22960904	.	-	2	Parent=Os07t0570300-01
Chr07	irgsp1_rep	CDS	22959784	22959888	.	-	0	Parent=Os07t0570300-01
Chr07	irgsp1_rep	CDS	22957569	22957770	.	-	0	Parent=Os07t0570300-01
Chr07	irgsp1_rep	CDS	22957055	22957263	.	-	2	Parent=Os07t0570300-01
Chr07	irgsp1_rep	CDS	22956776	22956900	.	-	0	Parent=Os07t0570300-01
Chr07	irgsp1_rep	CDS	22956596	22956647	.	-	1	Parent=Os07t0570300-01
Chr07	irgsp1_rep	CDS	22956434	22956520	.	-	0	Parent=Os07t0570300-01
Chr07	irgsp1_rep	CDS	22956183	22956305	.	-	0	Parent=Os07t0570300-01
Chr07	irgsp1_rep	CDS	22955858	22956109	.	-	0	Parent=Os07t0570300-01
Chr07	irgsp1_rep	three_prime_UTR	22955767	22955857	.	-	.	Parent=Os07t0570300-01
Chr07	irgsp1_rep	mRNA	22975406	22991120	.	-	.	ID=Os07t0570500-01;Name=Os07t0570500-01;Locus_id=Os07g0570500;Note=Similar to predicted protein.;Transcript_evidence=AK241780 (DDBJ%2C Best hit);ORF_evidence=Q93YG9 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: catalytic activity (GO:0003824),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: metal ion binding (GO:0046872);InterPro=Peptidase M16%2C zinc-binding site (IPR001431),Peptidase M16%2C C-terminal (IPR007863),Peptidase M16%2C core (IPR011237),Metalloenzyme%2C LuxS/M16 peptidase-like%2C metal-binding (IPR011249),Peptidase M16%2C N-terminal (IPR011765);NIAS_FLcDNA=J065206E10;TENOR=Os07t0570500-01;KEGG=Os07t0570500-01 (EC:3.4.24.56)
Chr07	irgsp1_rep	five_prime_UTR	22991082	22991120	.	-	.	Parent=Os07t0570500-01
Chr07	irgsp1_rep	CDS	22990902	22991081	.	-	0	Parent=Os07t0570500-01
Chr07	irgsp1_rep	CDS	22990725	22990800	.	-	0	Parent=Os07t0570500-01
Chr07	irgsp1_rep	CDS	22989173	22989240	.	-	2	Parent=Os07t0570500-01
Chr07	irgsp1_rep	CDS	22988234	22988325	.	-	0	Parent=Os07t0570500-01
Chr07	irgsp1_rep	CDS	22988077	22988150	.	-	1	Parent=Os07t0570500-01
Chr07	irgsp1_rep	CDS	22987944	22987987	.	-	2	Parent=Os07t0570500-01
Chr07	irgsp1_rep	CDS	22987732	22987783	.	-	0	Parent=Os07t0570500-01
Chr07	irgsp1_rep	CDS	22986200	22986322	.	-	2	Parent=Os07t0570500-01
Chr07	irgsp1_rep	CDS	22985981	22986093	.	-	2	Parent=Os07t0570500-01
Chr07	irgsp1_rep	CDS	22985701	22985863	.	-	0	Parent=Os07t0570500-01
Chr07	irgsp1_rep	CDS	22982870	22982962	.	-	2	Parent=Os07t0570500-01
Chr07	irgsp1_rep	CDS	22982700	22982785	.	-	2	Parent=Os07t0570500-01
Chr07	irgsp1_rep	CDS	22981836	22981922	.	-	0	Parent=Os07t0570500-01
Chr07	irgsp1_rep	CDS	22980598	22980701	.	-	0	Parent=Os07t0570500-01
Chr07	irgsp1_rep	CDS	22979782	22979884	.	-	1	Parent=Os07t0570500-01
Chr07	irgsp1_rep	CDS	22979596	22979691	.	-	0	Parent=Os07t0570500-01
Chr07	irgsp1_rep	CDS	22979334	22979523	.	-	0	Parent=Os07t0570500-01
Chr07	irgsp1_rep	CDS	22978932	22978993	.	-	2	Parent=Os07t0570500-01
Chr07	irgsp1_rep	CDS	22978105	22978209	.	-	0	Parent=Os07t0570500-01
Chr07	irgsp1_rep	CDS	22977785	22977986	.	-	0	Parent=Os07t0570500-01
Chr07	irgsp1_rep	CDS	22977303	22977511	.	-	2	Parent=Os07t0570500-01
Chr07	irgsp1_rep	CDS	22976518	22976642	.	-	0	Parent=Os07t0570500-01
Chr07	irgsp1_rep	CDS	22976359	22976410	.	-	1	Parent=Os07t0570500-01
Chr07	irgsp1_rep	CDS	22976200	22976286	.	-	0	Parent=Os07t0570500-01
Chr07	irgsp1_rep	CDS	22975988	22976110	.	-	0	Parent=Os07t0570500-01
Chr07	irgsp1_rep	CDS	22975666	22975917	.	-	0	Parent=Os07t0570500-01
Chr07	irgsp1_rep	three_prime_UTR	22975406	22975665	.	-	.	Parent=Os07t0570500-01
Chr07	irgsp1_rep	mRNA	22997026	22997412	.	-	.	ID=Os07t0570550-00;Name=Os07t0570550-00;Locus_id=Os07g0570550;Note=Cupredoxin domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B6TG00 (UniProt);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Blue (type 1) copper domain (IPR000923),Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);Oryzabase=22054;TENOR=Os07t0570550-00;KEGG=Os07t0570550-00
Chr07	irgsp1_rep	CDS	22997026	22997412	.	-	0	Parent=Os07t0570550-00
Chr07	irgsp1_rep	mRNA	22997061	23001698	.	+	.	ID=Os07t0570575-00;Name=Os07t0570575-00;Locus_id=Os07g0570575;Note=Hypothetical protein.;Transcript_evidence=BT019306 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0570575-00
Chr07	irgsp1_rep	five_prime_UTR	22997061	22997074	.	+	.	Parent=Os07t0570575-00
Chr07	irgsp1_rep	CDS	22997075	22997308	.	+	0	Parent=Os07t0570575-00
Chr07	irgsp1_rep	three_prime_UTR	22997309	22997442	.	+	.	Parent=Os07t0570575-00
Chr07	irgsp1_rep	three_prime_UTR	23001590	23001698	.	+	.	Parent=Os07t0570575-00
Chr07	irgsp1_rep	mRNA	23001340	23002063	.	-	.	ID=Os07t0570600-01;Name=Os07t0570600-01;Locus_id=Os07g0570600;Note=Cupredoxin domain containing protein.;Transcript_evidence=AK108722 (DDBJ%2C Best hit);ORF_evidence=B6TG00 (UniProt);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);NIAS_FLcDNA=002-150-C03;Expression=AK108722;TENOR=Os07t0570600-01;KEGG=Os07t0570600-01
Chr07	irgsp1_rep	five_prime_UTR	23001803	23002063	.	-	.	Parent=Os07t0570600-01
Chr07	irgsp1_rep	CDS	23001476	23001802	.	-	0	Parent=Os07t0570600-01
Chr07	irgsp1_rep	three_prime_UTR	23001340	23001475	.	-	.	Parent=Os07t0570600-01
Chr07	irgsp1_rep	mRNA	23003380	23008447	.	+	.	ID=Os07t0570700-01;Name=Os07t0570700-01;Locus_id=Os07g0570700;Note=Ribosome recycling factor family protein.;Transcript_evidence=AK065242 (DDBJ%2C Best hit);ORF_evidence=A2YMU2 (UniProt);GO=Biological Process: translation (GO:0006412);InterPro=Ribosome recycling factor (IPR002661),Ribosome recycling factor domain (IPR023584);NIAS_FLcDNA=J013002I12;Expression=AK065242;TENOR=Os07t0570700-01;KEGG=Os07t0570700-01
Chr07	irgsp1_rep	five_prime_UTR	23003380	23003476	.	+	.	Parent=Os07t0570700-01
Chr07	irgsp1_rep	CDS	23003477	23003564	.	+	0	Parent=Os07t0570700-01
Chr07	irgsp1_rep	CDS	23004583	23004695	.	+	2	Parent=Os07t0570700-01
Chr07	irgsp1_rep	CDS	23004781	23004849	.	+	0	Parent=Os07t0570700-01
Chr07	irgsp1_rep	CDS	23004940	23005035	.	+	0	Parent=Os07t0570700-01
Chr07	irgsp1_rep	CDS	23005375	23005472	.	+	0	Parent=Os07t0570700-01
Chr07	irgsp1_rep	CDS	23005557	23005668	.	+	1	Parent=Os07t0570700-01
Chr07	irgsp1_rep	CDS	23006478	23006519	.	+	0	Parent=Os07t0570700-01
Chr07	irgsp1_rep	CDS	23007546	23007602	.	+	0	Parent=Os07t0570700-01
Chr07	irgsp1_rep	CDS	23007695	23007745	.	+	0	Parent=Os07t0570700-01
Chr07	irgsp1_rep	CDS	23007863	23007919	.	+	0	Parent=Os07t0570700-01
Chr07	irgsp1_rep	CDS	23008101	23008118	.	+	0	Parent=Os07t0570700-01
Chr07	irgsp1_rep	three_prime_UTR	23008119	23008447	.	+	.	Parent=Os07t0570700-01
Chr07	irgsp1_rep	mRNA	23047033	23047670	.	-	.	ID=Os07t0571000-01;Name=Os07t0571000-01;Locus_id=Os07g0571000;Note=Hypothetical gene.;Transcript_evidence=AK108301 (DDBJ%2C Best hit),AK106724 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-141-F01,002-114-G11;TENOR=Os07t0571000-01;KEGG=Os07t0571000-01
Chr07	irgsp1_rep	five_prime_UTR	23047670	23047670	.	-	.	Parent=Os07t0571000-01
Chr07	irgsp1_rep	CDS	23047226	23047669	.	-	0	Parent=Os07t0571000-01
Chr07	irgsp1_rep	three_prime_UTR	23047033	23047225	.	-	.	Parent=Os07t0571000-01
Chr07	irgsp1_rep	mRNA	23051324	23055637	.	-	.	ID=Os07t0571100-01;Name=Os07t0571100-01;Locus_id=Os07g0571100;Note=Conserved hypothetical protein.;Transcript_evidence=AK119301 (DDBJ%2C Best hit);ORF_evidence=A3BLC4 (UniProt);NIAS_FLcDNA=001-130-F01;TENOR=Os07t0571100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	23055586	23055637	.	-	0	Parent=Os07t0571100-01
Chr07	irgsp1_rep	CDS	23055327	23055493	.	-	2	Parent=Os07t0571100-01
Chr07	irgsp1_rep	CDS	23054903	23055227	.	-	0	Parent=Os07t0571100-01
Chr07	irgsp1_rep	CDS	23054409	23054805	.	-	2	Parent=Os07t0571100-01
Chr07	irgsp1_rep	CDS	23054234	23054285	.	-	1	Parent=Os07t0571100-01
Chr07	irgsp1_rep	CDS	23053975	23054061	.	-	0	Parent=Os07t0571100-01
Chr07	irgsp1_rep	CDS	23053629	23053872	.	-	0	Parent=Os07t0571100-01
Chr07	irgsp1_rep	CDS	23053467	23053536	.	-	2	Parent=Os07t0571100-01
Chr07	irgsp1_rep	CDS	23053296	23053380	.	-	1	Parent=Os07t0571100-01
Chr07	irgsp1_rep	CDS	23052781	23053215	.	-	0	Parent=Os07t0571100-01
Chr07	irgsp1_rep	CDS	23051324	23052691	.	-	0	Parent=Os07t0571100-01
Chr07	irgsp1_rep	mRNA	23049463	23053977	.	-	.	ID=Os07t0571100-02;Name=Os07t0571100-02;Locus_id=Os07g0571100;Note=Hypothetical conserved gene.;Transcript_evidence=AK099771 (DDBJ%2C Best hit);ORF_evidence=A3BLC4 (UniProt);NIAS_FLcDNA=J013095D13;Expression=AK099771;TENOR=Os07t0571100-02;KEGG=Os07t0571100-02
Chr07	irgsp1_rep	five_prime_UTR	23053873	23053977	.	-	.	Parent=Os07t0571100-02
Chr07	irgsp1_rep	CDS	23053629	23053872	.	-	0	Parent=Os07t0571100-02
Chr07	irgsp1_rep	CDS	23053467	23053536	.	-	2	Parent=Os07t0571100-02
Chr07	irgsp1_rep	CDS	23053296	23053380	.	-	1	Parent=Os07t0571100-02
Chr07	irgsp1_rep	CDS	23052781	23053215	.	-	0	Parent=Os07t0571100-02
Chr07	irgsp1_rep	CDS	23050507	23052691	.	-	0	Parent=Os07t0571100-02
Chr07	irgsp1_rep	CDS	23050240	23050419	.	-	2	Parent=Os07t0571100-02
Chr07	irgsp1_rep	CDS	23050111	23050118	.	-	2	Parent=Os07t0571100-02
Chr07	irgsp1_rep	three_prime_UTR	23049463	23050110	.	-	.	Parent=Os07t0571100-02
Chr07	irgsp1_rep	mRNA	23049688	23051529	.	-	.	ID=Os07t0571100-03;Name=Os07t0571100-03;Locus_id=Os07g0571100;Note=Hypothetical conserved gene.;Transcript_evidence=AK067380 (DDBJ%2C Best hit);ORF_evidence=Q6YTV3 (UniProt);NIAS_FLcDNA=J013099N15;Expression=AK067380;TENOR=Os07t0571100-03;KEGG=Os07t0571100-03
Chr07	irgsp1_rep	five_prime_UTR	23051528	23051529	.	-	.	Parent=Os07t0571100-03
Chr07	irgsp1_rep	CDS	23050507	23051527	.	-	0	Parent=Os07t0571100-03
Chr07	irgsp1_rep	CDS	23050240	23050419	.	-	2	Parent=Os07t0571100-03
Chr07	irgsp1_rep	CDS	23050111	23050118	.	-	2	Parent=Os07t0571100-03
Chr07	irgsp1_rep	three_prime_UTR	23049688	23050110	.	-	.	Parent=Os07t0571100-03
Chr07	irgsp1_rep	mRNA	23055708	23056055	.	+	.	ID=Os07t0571200-00;Name=Os07t0571200-00;Locus_id=Os07g0571200;Note=Hypothetical protein.;Transcript_evidence=BT067768 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0571200-00
Chr07	irgsp1_rep	five_prime_UTR	23055708	23055751	.	+	.	Parent=Os07t0571200-00
Chr07	irgsp1_rep	CDS	23055752	23056055	.	+	0	Parent=Os07t0571200-00
Chr07	irgsp1_rep	mRNA	23058800	23059595	.	-	.	ID=Os07t0571300-01;Name=Os07t0571300-01;Locus_id=Os07g0571300;Note=Hypothetical protein.;Transcript_evidence=AK107499 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-129-D11;Expression=AK107499;TENOR=Os07t0571300-01;KEGG=Os07t0571300-01
Chr07	irgsp1_rep	five_prime_UTR	23059533	23059595	.	-	.	Parent=Os07t0571300-01
Chr07	irgsp1_rep	CDS	23059137	23059532	.	-	0	Parent=Os07t0571300-01
Chr07	irgsp1_rep	three_prime_UTR	23058800	23059136	.	-	.	Parent=Os07t0571300-01
Chr07	irgsp1_rep	mRNA	23070015	23074573	.	-	.	ID=Os07t0571500-00;Name=Os07t0571500-00;Locus_id=Os07g0571500;Note=Similar to Transmembrane protein 49.;Transcript_evidence=CT831667 (DDBJ%2C Best hit);ORF_evidence=B6TDW5 (UniProt);InterPro=SNARE associated Golgi protein (IPR015414);TENOR=Os07t0571500-00;KEGG=Os07t0571500-00
Chr07	irgsp1_rep	five_prime_UTR	23074506	23074573	.	-	.	Parent=Os07t0571500-00
Chr07	irgsp1_rep	five_prime_UTR	23074278	23074418	.	-	.	Parent=Os07t0571500-00
Chr07	irgsp1_rep	CDS	23074223	23074277	.	-	0	Parent=Os07t0571500-00
Chr07	irgsp1_rep	CDS	23073082	23073293	.	-	2	Parent=Os07t0571500-00
Chr07	irgsp1_rep	CDS	23072805	23072883	.	-	0	Parent=Os07t0571500-00
Chr07	irgsp1_rep	CDS	23072364	23072651	.	-	2	Parent=Os07t0571500-00
Chr07	irgsp1_rep	CDS	23071509	23071663	.	-	2	Parent=Os07t0571500-00
Chr07	irgsp1_rep	CDS	23071116	23071232	.	-	0	Parent=Os07t0571500-00
Chr07	irgsp1_rep	CDS	23070821	23071006	.	-	0	Parent=Os07t0571500-00
Chr07	irgsp1_rep	CDS	23070160	23070351	.	-	0	Parent=Os07t0571500-00
Chr07	irgsp1_rep	three_prime_UTR	23070015	23070159	.	-	.	Parent=Os07t0571500-00
Chr07	irgsp1_rep	mRNA	23076409	23078827	.	-	.	ID=Os07t0571600-00;Name=Os07t0571600-00;Locus_id=Os07g0571600;Note=Chalcone isomerase domain containing protein.;Transcript_evidence=CT837974 (DDBJ%2C Best hit);ORF_evidence=NP_001149585.1 (RefSeq);GO=Biological Process: flavonoid biosynthetic process (GO:0009813),Biological Process: cellular modified amino acid biosynthetic process (GO:0042398),Molecular Function: intramolecular lyase activity (GO:0016872),Molecular Function: chalcone isomerase activity (GO:0045430);InterPro=Chalcone isomerase%2C subgroup (IPR003466),Chalcone isomerase (IPR016087),Chalcone isomerase%2C 3-layer sandwich (IPR016088);TENOR=Os07t0571600-00;KEGG=Os07t0571600-00
Chr07	irgsp1_rep	five_prime_UTR	23078714	23078827	.	-	.	Parent=Os07t0571600-00
Chr07	irgsp1_rep	CDS	23078401	23078713	.	-	0	Parent=Os07t0571600-00
Chr07	irgsp1_rep	CDS	23078053	23078299	.	-	2	Parent=Os07t0571600-00
Chr07	irgsp1_rep	CDS	23077255	23077346	.	-	1	Parent=Os07t0571600-00
Chr07	irgsp1_rep	CDS	23076598	23076737	.	-	2	Parent=Os07t0571600-00
Chr07	irgsp1_rep	three_prime_UTR	23076409	23076597	.	-	.	Parent=Os07t0571600-00
Chr07	irgsp1_rep	mRNA	23081214	23085128	.	-	.	ID=Os07t0571700-01;Name=Os07t0571700-01;Locus_id=Os07g0571700;Note=Similar to Transporter-like protein.;Transcript_evidence=AK067178 (DDBJ%2C Best hit);ORF_evidence=NP_001151801.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857);InterPro=General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J013098E20;Expression=AK067178;TENOR=Os07t0571700-01;KEGG=Os07t0571700-01
Chr07	irgsp1_rep	five_prime_UTR	23085074	23085128	.	-	.	Parent=Os07t0571700-01
Chr07	irgsp1_rep	CDS	23084778	23085073	.	-	0	Parent=Os07t0571700-01
Chr07	irgsp1_rep	CDS	23083921	23084158	.	-	1	Parent=Os07t0571700-01
Chr07	irgsp1_rep	CDS	23083189	23083717	.	-	0	Parent=Os07t0571700-01
Chr07	irgsp1_rep	CDS	23082379	23082581	.	-	2	Parent=Os07t0571700-01
Chr07	irgsp1_rep	CDS	23081519	23081728	.	-	0	Parent=Os07t0571700-01
Chr07	irgsp1_rep	three_prime_UTR	23081214	23081518	.	-	.	Parent=Os07t0571700-01
Chr07	irgsp1_rep	mRNA	23086550	23087817	.	+	.	ID=Os07t0571800-01;Name=Os07t0571800-01;Locus_id=Os07g0571800;CGSNL Gene Symbol=YAB7;CGSNL Gene Name=YABBY7;Oryzabase Gene Symbol Synonym(s)=OsYAB7;Oryzabase Gene Name Synonym(s)=YABBY 7%2C OsYABBY7%2C Os YABBY7;Note=Similar to Protein YABBY 7.;Transcript_evidence=AK072618 (DDBJ%2C Best hit);ORF_evidence=A2PZN8 (UniProt);InterPro=YABBY protein (IPR006780);NIAS_FLcDNA=J023130N03;Oryzabase=10364;Expression=AK072618;TENOR=Os07t0571800-01;KEGG=Os07t0571800-01
Chr07	irgsp1_rep	five_prime_UTR	23086550	23086585	.	+	.	Parent=Os07t0571800-01
Chr07	irgsp1_rep	CDS	23086586	23086672	.	+	0	Parent=Os07t0571800-01
Chr07	irgsp1_rep	CDS	23086758	23086889	.	+	0	Parent=Os07t0571800-01
Chr07	irgsp1_rep	three_prime_UTR	23086890	23087485	.	+	.	Parent=Os07t0571800-01
Chr07	irgsp1_rep	three_prime_UTR	23087566	23087817	.	+	.	Parent=Os07t0571800-01
Chr07	irgsp1_rep	mRNA	23087933	23090782	.	-	.	ID=Os07t0571900-01;Name=Os07t0571900-01;Locus_id=Os07g0571900;Note=Prp18 domain containing protein.;Transcript_evidence=AK101604 (DDBJ%2C Best hit);ORF_evidence=B6T2W8 (UniProt);GO=Biological Process: RNA splicing (GO:0008380),Cellular Component: spliceosomal complex (GO:0005681);InterPro=Splicing factor motif (IPR003648),Prp18 (IPR004098),Pre-mRNA processing factor 4 (PRP4)-like (IPR014906);NIAS_FLcDNA=J033051L15;Expression=AK101604;TENOR=Os07t0571900-01;KEGG=Os07t0571900-01
Chr07	irgsp1_rep	five_prime_UTR	23090661	23090782	.	-	.	Parent=Os07t0571900-01
Chr07	irgsp1_rep	CDS	23089752	23090660	.	-	0	Parent=Os07t0571900-01
Chr07	irgsp1_rep	CDS	23088100	23088507	.	-	0	Parent=Os07t0571900-01
Chr07	irgsp1_rep	three_prime_UTR	23087933	23088099	.	-	.	Parent=Os07t0571900-01
Chr07	irgsp1_rep	mRNA	23091890	23094419	.	+	.	ID=Os07t0572000-01;Name=Os07t0572000-01;Locus_id=Os07g0572000;RAP-DB Gene Symbol Synonym(s)=OsWDR5b;Oryzabase Gene Symbol Synonym(s)=OsWD40-144%2C WD40-144%2C OsWDR5b%2C WDR5b;Note=WD40 protein;Transcript_evidence=AK111653;ORF_evidence=Q6YTU7;GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40/YVTN repeat-like-containing domain superfamily (IPR015943),WD40-repeat-containing domain superfamily (IPR036322),WD40-repeat-containing domain (IPR017986),WD40 repeat (IPR001680),G-protein beta WD-40 repeat (IPR020472),WD40 repeat%2C conserved site (IPR019775);NIAS_FLcDNA=J013133P16;Manual Curation=April 5%2C 2018;Literature_PMID=29440594;Oryzabase=10825;Expression=AK111653;TENOR=Os07t0572000-01;KEGG=Os07t0572000-01
Chr07	irgsp1_rep	five_prime_UTR	23091890	23091987	.	+	.	Parent=Os07t0572000-01
Chr07	irgsp1_rep	CDS	23091988	23092713	.	+	0	Parent=Os07t0572000-01
Chr07	irgsp1_rep	CDS	23093900	23094190	.	+	0	Parent=Os07t0572000-01
Chr07	irgsp1_rep	three_prime_UTR	23094191	23094419	.	+	.	Parent=Os07t0572000-01
Chr07	irgsp1_rep	mRNA	23095971	23096786	.	+	.	ID=Os07t0572050-00;Name=Os07t0572050-00;Locus_id=Os07g0572050;Note=Similar to Copper amine oxidase.;Transcript_evidence=ab initio prediction;ORF_evidence=B7ZYE7 (UniProt);GO=Biological Process: amine metabolic process (GO:0009308),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: copper ion binding (GO:0005507),Molecular Function: primary amine oxidase activity (GO:0008131),Molecular Function: quinone binding (GO:0048038);InterPro=Copper amine oxidase (IPR000269),Copper amine oxidase%2C N2-terminal (IPR015800),Copper amine oxidase%2C N2/N3-terminal (IPR015801),Copper amine oxidase%2C N3-terminal (IPR015802),Copper amine oxidase%2C N-terminal (IPR016182);TENOR=Os07t0572050-00;KEGG=Os07t0572050-00
Chr07	irgsp1_rep	CDS	23095971	23096786	.	+	0	Parent=Os07t0572050-00
Chr07	irgsp1_rep	mRNA	23096025	23099080	.	-	.	ID=Os07t0572075-00;Name=Os07t0572075-00;Locus_id=Os07g0572075;Note=Hypothetical protein.;Transcript_evidence=BT063833 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0572075-00
Chr07	irgsp1_rep	CDS	23098645	23099080	.	-	0	Parent=Os07t0572075-00
Chr07	irgsp1_rep	CDS	23096025	23096755	.	-	2	Parent=Os07t0572075-00
Chr07	irgsp1_rep	mRNA	23098564	23100449	.	+	.	ID=Os07t0572100-01;Name=Os07t0572100-01;Locus_id=Os07g0572100;Oryzabase Gene Symbol Synonym(s)=DAO;Oryzabase Gene Name Synonym(s)=Copper amine oxidase;Note=Similar to Amine oxidase like protein (EC 1.4.3.6) (Copper amine oxidase).;Transcript_evidence=AK099435 (DDBJ%2C Best hit);ORF_evidence=B7ZYE7 (UniProt);GO=Biological Process: amine metabolic process (GO:0009308),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: copper ion binding (GO:0005507),Molecular Function: primary amine oxidase activity (GO:0008131),Molecular Function: quinone binding (GO:0048038);InterPro=Copper amine oxidase (IPR000269),Copper amine oxidase%2C C-terminal (IPR015798);NIAS_FLcDNA=J013014O02;Oryzabase=11224;Expression=AK099435;TENOR=Os07t0572100-01;KEGG=Os07t0572100-01 (EC:1.4.3.6)
Chr07	irgsp1_rep	five_prime_UTR	23098564	23098657	.	+	.	Parent=Os07t0572100-01
Chr07	irgsp1_rep	CDS	23098658	23099098	.	+	0	Parent=Os07t0572100-01
Chr07	irgsp1_rep	CDS	23099200	23099313	.	+	0	Parent=Os07t0572100-01
Chr07	irgsp1_rep	CDS	23099386	23100171	.	+	0	Parent=Os07t0572100-01
Chr07	irgsp1_rep	three_prime_UTR	23100172	23100449	.	+	.	Parent=Os07t0572100-01
Chr07	irgsp1_rep	mRNA	23106363	23108161	.	+	.	ID=Os07t0572300-01;Name=Os07t0572300-01;Locus_id=Os07g0572300;Note=Protein of unknown function DUF868%2C plant family protein.;Transcript_evidence=AK074013 (DDBJ%2C Best hit);ORF_evidence=A2YMV3 (UniProt);InterPro=Protein of unknown function DUF868%2C plant (IPR008586);NIAS_FLcDNA=J033074P14;Expression=AK074013;TENOR=Os07t0572300-01;KEGG=Os07t0572300-01
Chr07	irgsp1_rep	five_prime_UTR	23106363	23106644	.	+	.	Parent=Os07t0572300-01
Chr07	irgsp1_rep	five_prime_UTR	23106742	23107019	.	+	.	Parent=Os07t0572300-01
Chr07	irgsp1_rep	CDS	23107020	23107874	.	+	0	Parent=Os07t0572300-01
Chr07	irgsp1_rep	three_prime_UTR	23107875	23108161	.	+	.	Parent=Os07t0572300-01
Chr07	irgsp1_rep	mRNA	23110169	23111254	.	+	.	ID=Os07t0572400-01;Name=Os07t0572400-01;Locus_id=Os07g0572400;Note=Conserved hypothetical protein.;Transcript_evidence=AK067317 (DDBJ%2C Best hit);ORF_evidence=B8B7T8 (UniProt);NIAS_FLcDNA=J013105D21;Expression=AK067317;TENOR=Os07t0572400-01;KEGG=Os07t0572400-01
Chr07	irgsp1_rep	five_prime_UTR	23110169	23110410	.	+	.	Parent=Os07t0572400-01
Chr07	irgsp1_rep	CDS	23110411	23110540	.	+	0	Parent=Os07t0572400-01
Chr07	irgsp1_rep	CDS	23110649	23110791	.	+	2	Parent=Os07t0572400-01
Chr07	irgsp1_rep	three_prime_UTR	23110792	23111254	.	+	.	Parent=Os07t0572400-01
Chr07	irgsp1_rep	mRNA	23112171	23113903	.	+	.	ID=Os07t0572500-01;Name=Os07t0572500-01;Locus_id=Os07g0572500;Note=Conserved hypothetical protein.;Transcript_evidence=AK108612 (DDBJ%2C Best hit);ORF_evidence=B8B7T9 (UniProt);NIAS_FLcDNA=002-147-A11;TENOR=Os07t0572500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	23112171	23112258	.	+	.	Parent=Os07t0572500-01
Chr07	irgsp1_rep	CDS	23112259	23112539	.	+	0	Parent=Os07t0572500-01
Chr07	irgsp1_rep	CDS	23112691	23112721	.	+	1	Parent=Os07t0572500-01
Chr07	irgsp1_rep	three_prime_UTR	23112722	23113903	.	+	.	Parent=Os07t0572500-01
Chr07	irgsp1_rep	mRNA	23115846	23119820	.	+	.	ID=Os07t0572600-01;Name=Os07t0572600-01;Locus_id=Os07g0572600;Note=Similar to F20D23.3 protein.;Transcript_evidence=AK109147 (DDBJ%2C Best hit),AK072023 (DDBJ%2C Best hit);ORF_evidence=Q9SHI5 (UniProt);InterPro=GDP-fucose protein O-fucosyltransferase (IPR019378);NIAS_FLcDNA=002-155-F05,J013105N08;TENOR=Os07t0572600-01
Chr07	irgsp1_rep	five_prime_UTR	23115846	23115896	.	+	.	Parent=Os07t0572600-01
Chr07	irgsp1_rep	CDS	23115897	23117143	.	+	0	Parent=Os07t0572600-01
Chr07	irgsp1_rep	CDS	23119047	23119296	.	+	1	Parent=Os07t0572600-01
Chr07	irgsp1_rep	CDS	23119387	23119563	.	+	0	Parent=Os07t0572600-01
Chr07	irgsp1_rep	three_prime_UTR	23119564	23119820	.	+	.	Parent=Os07t0572600-01
Chr07	irgsp1_rep	mRNA	23146051	23149345	.	+	.	ID=Os07t0572800-01;Name=Os07t0572800-01;Locus_id=Os07g0572800;RAP-DB Gene Symbol Synonym(s)=OsWNK1;RAP-DB Gene Name Synonym(s)=With No Lysine kinase 1%2C WNK kinase 1;CGSNL Gene Symbol=WNK1;CGSNL Gene Name=WITH NO LYSINE KINASE 1;Oryzabase Gene Symbol Synonym(s)=OsWNK1;Oryzabase Gene Name Synonym(s)=With No Lysine kinase 1%2C WNK protein kinase 1%2C WNK kinase 1;Note=WNK (With No Lysine) kinase%2C Ser/thr protein kinase family member%2C Abiotic stress tolerance%2C Internal circadian rhythm;Transcript_evidence=AK100426;ORF_evidence=Q0D598;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),Protein kinase domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J023088C06;Manual Curation=March 29%2C 2018;Literature_PMID=21178395;Oryzabase=20436;Expression=AK100426;TENOR=Os07t0572800-01;KEGG=Os07t0572800-01 (EC:2.7.11.1)
Chr07	irgsp1_rep	five_prime_UTR	23146051	23146138	.	+	.	Parent=Os07t0572800-01
Chr07	irgsp1_rep	CDS	23146139	23146222	.	+	0	Parent=Os07t0572800-01
Chr07	irgsp1_rep	CDS	23146315	23146352	.	+	0	Parent=Os07t0572800-01
Chr07	irgsp1_rep	CDS	23146440	23146667	.	+	1	Parent=Os07t0572800-01
Chr07	irgsp1_rep	CDS	23146886	23147106	.	+	1	Parent=Os07t0572800-01
Chr07	irgsp1_rep	CDS	23147219	23147376	.	+	2	Parent=Os07t0572800-01
Chr07	irgsp1_rep	CDS	23147486	23147918	.	+	0	Parent=Os07t0572800-01
Chr07	irgsp1_rep	CDS	23148021	23148973	.	+	2	Parent=Os07t0572800-01
Chr07	irgsp1_rep	three_prime_UTR	23148974	23149345	.	+	.	Parent=Os07t0572800-01
Chr07	irgsp1_rep	mRNA	23146605	23149165	.	+	.	ID=Os07t0572800-02;Name=Os07t0572800-02;Locus_id=Os07g0572800;CGSNL Gene Symbol=WNK1;CGSNL Gene Name=WITH NO LYSINE KINASE 1;Oryzabase Gene Symbol Synonym(s)=OsWNK1;Oryzabase Gene Name Synonym(s)=With No Lysine kinase 1%2C WNK protein kinase 1%2C WNK kinase 1;Note=Hypothetical conserved gene.;Transcript_evidence=AK060818 (DDBJ%2C Best hit);ORF_evidence=C0M0P2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-034-A05;Oryzabase=20436;Expression=AK060818;TENOR=Os07t0572800-02;KEGG=Os07t0572800-02 (EC:2.7.11.1)
Chr07	irgsp1_rep	five_prime_UTR	23146605	23146605	.	+	.	Parent=Os07t0572800-02
Chr07	irgsp1_rep	CDS	23146606	23146667	.	+	0	Parent=Os07t0572800-02
Chr07	irgsp1_rep	CDS	23146886	23147106	.	+	1	Parent=Os07t0572800-02
Chr07	irgsp1_rep	CDS	23147219	23147460	.	+	2	Parent=Os07t0572800-02
Chr07	irgsp1_rep	three_prime_UTR	23147461	23147918	.	+	.	Parent=Os07t0572800-02
Chr07	irgsp1_rep	three_prime_UTR	23148021	23149165	.	+	.	Parent=Os07t0572800-02
Chr07	irgsp1_rep	mRNA	23146159	23148178	.	-	.	ID=Os07t0572850-00;Name=Os07t0572850-00;Locus_id=Os07g0572850;Note=Non-protein coding transcript.;Transcript_evidence=tplb0061f07 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os07t0572850-00
Chr07	irgsp1_rep	exon	23147969	23148178	.	-	.	Parent=Os07t0572850-00
Chr07	irgsp1_rep	exon	23147510	23147805	.	-	.	Parent=Os07t0572850-00
Chr07	irgsp1_rep	exon	23147216	23147397	.	-	.	Parent=Os07t0572850-00
Chr07	irgsp1_rep	exon	23146879	23147105	.	-	.	Parent=Os07t0572850-00
Chr07	irgsp1_rep	exon	23146419	23146659	.	-	.	Parent=Os07t0572850-00
Chr07	irgsp1_rep	exon	23146159	23146237	.	-	.	Parent=Os07t0572850-00
Chr07	irgsp1_rep	mRNA	23153184	23154093	.	+	.	ID=Os07t0572900-01;Name=Os07t0572900-01;Locus_id=Os07g0572900;Oryzabase Gene Symbol Synonym(s)=RPS13%2C OsRPS13;Oryzabase Gene Name Synonym(s)=ribosomal protein S13%2C ribosomal protein small subunit 13;Note=Similar to 40S ribosomal protein S13.;Transcript_evidence=AK063015 (DDBJ%2C Best hit);ORF_evidence=B4FML8 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S15 (IPR000589),S15/NS1%2C RNA-binding (IPR009068),Ribosomal protein S13/S15%2C N-terminal (IPR012606);NIAS_FLcDNA=001-110-A09;Oryzabase=22177;Expression=AK063015;TENOR=Os07t0572900-01;KEGG=Os07t0572900-01
Chr07	irgsp1_rep	five_prime_UTR	23153184	23153268	.	+	.	Parent=Os07t0572900-01
Chr07	irgsp1_rep	CDS	23153269	23153724	.	+	0	Parent=Os07t0572900-01
Chr07	irgsp1_rep	three_prime_UTR	23153725	23154093	.	+	.	Parent=Os07t0572900-01
Chr07	irgsp1_rep	mRNA	23155123	23157341	.	+	.	ID=Os07t0573000-01;Name=Os07t0573000-01;Locus_id=Os07g0573000;Note=Conserved hypothetical protein.;Transcript_evidence=AK120026 (DDBJ%2C Best hit);ORF_evidence=A3BLD8 (UniProt);NIAS_FLcDNA=002-186-C10;Expression=AK120026;TENOR=Os07t0573000-01;KEGG=Os07t0573000-01
Chr07	irgsp1_rep	five_prime_UTR	23155123	23156611	.	+	.	Parent=Os07t0573000-01
Chr07	irgsp1_rep	CDS	23156612	23156971	.	+	0	Parent=Os07t0573000-01
Chr07	irgsp1_rep	three_prime_UTR	23156972	23157341	.	+	.	Parent=Os07t0573000-01
Chr07	irgsp1_rep	mRNA	23160404	23164551	.	+	.	ID=Os07t0573100-01;Name=Os07t0573100-01;Locus_id=Os07g0573100;Note=Similar to Adenylyl-sulfate kinase 1%2C chloroplast precursor (EC 2.7.1.25) (APS kinase) (Adenosine-5'phosphosulfate kinase) (ATP adenosine-5'- phosphosulfate 3'-phosphotransferase).;Transcript_evidence=AK071285 (DDBJ%2C Best hit);ORF_evidence=B8B7U1 (UniProt);GO=Biological Process: sulfate assimilation (GO:0000103),Molecular Function: ATP binding (GO:0005524),Molecular Function: kinase activity (GO:0016301),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Adenylylsulphate kinase%2C C-terminal (IPR002891);NIAS_FLcDNA=J023086D14;Expression=AK071285;TENOR=Os07t0573100-01;KEGG=Os07t0573100-01 (EC:2.7.1.25%2C EC:2.7.7.4)
Chr07	irgsp1_rep	five_prime_UTR	23160404	23160434	.	+	.	Parent=Os07t0573100-01
Chr07	irgsp1_rep	CDS	23160435	23160822	.	+	0	Parent=Os07t0573100-01
Chr07	irgsp1_rep	CDS	23161455	23161604	.	+	2	Parent=Os07t0573100-01
Chr07	irgsp1_rep	CDS	23162454	23162603	.	+	2	Parent=Os07t0573100-01
Chr07	irgsp1_rep	CDS	23162745	23162863	.	+	2	Parent=Os07t0573100-01
Chr07	irgsp1_rep	CDS	23162963	23163047	.	+	0	Parent=Os07t0573100-01
Chr07	irgsp1_rep	CDS	23163506	23163552	.	+	2	Parent=Os07t0573100-01
Chr07	irgsp1_rep	CDS	23164090	23164188	.	+	0	Parent=Os07t0573100-01
Chr07	irgsp1_rep	three_prime_UTR	23164189	23164551	.	+	.	Parent=Os07t0573100-01
Chr07	irgsp1_rep	mRNA	23165681	23166392	.	+	.	ID=Os07t0573200-00;Name=Os07t0573200-00;Locus_id=Os07g0573200;Note=Similar to Adenylyl-sulfate kinase.;Transcript_evidence=CT836177 (DDBJ%2C Best hit);ORF_evidence=B8B7U1 (UniProt);TENOR=Os07t0573200-00;KEGG=Os07t0573200-00
Chr07	irgsp1_rep	five_prime_UTR	23165681	23165831	.	+	.	Parent=Os07t0573200-00
Chr07	irgsp1_rep	CDS	23165832	23166224	.	+	0	Parent=Os07t0573200-00
Chr07	irgsp1_rep	three_prime_UTR	23166225	23166392	.	+	.	Parent=Os07t0573200-00
Chr07	irgsp1_rep	mRNA	23169765	23173649	.	+	.	ID=Os07t0573300-01;Name=Os07t0573300-01;Locus_id=Os07g0573300;Oryzabase Gene Name Synonym(s)=FYVE finger-containing phosphoinositide kinase;Note=FYVE finger-containing phosphoinositide kinase (EC 2.7.1.68) (1- phosphatidylinositol-4-phosphate 5-kinase) (PIP5K) (PtdIns(4)P-5- kinase) (PIKfyve) (p235). Splice isoform p235S.;Transcript_evidence=AK071682 (DDBJ%2C Best hit);ORF_evidence=Q6ZL20 (UniProt);GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C FYVE-type (IPR000306),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C FYVE-related (IPR017455);NIAS_FLcDNA=J023108G06;Oryzabase=21960;Expression=AK071682;TENOR=Os07t0573300-01;KEGG=Os07t0573300-01 (EC:2.7.1.68)
Chr07	irgsp1_rep	five_prime_UTR	23169765	23169921	.	+	.	Parent=Os07t0573300-01
Chr07	irgsp1_rep	CDS	23169922	23170668	.	+	0	Parent=Os07t0573300-01
Chr07	irgsp1_rep	CDS	23170806	23170892	.	+	0	Parent=Os07t0573300-01
Chr07	irgsp1_rep	CDS	23171003	23171134	.	+	0	Parent=Os07t0573300-01
Chr07	irgsp1_rep	CDS	23171714	23171848	.	+	0	Parent=Os07t0573300-01
Chr07	irgsp1_rep	CDS	23172223	23172288	.	+	0	Parent=Os07t0573300-01
Chr07	irgsp1_rep	CDS	23172376	23172486	.	+	0	Parent=Os07t0573300-01
Chr07	irgsp1_rep	CDS	23172816	23172908	.	+	0	Parent=Os07t0573300-01
Chr07	irgsp1_rep	CDS	23173134	23173238	.	+	0	Parent=Os07t0573300-01
Chr07	irgsp1_rep	CDS	23173331	23173408	.	+	0	Parent=Os07t0573300-01
Chr07	irgsp1_rep	three_prime_UTR	23173409	23173649	.	+	.	Parent=Os07t0573300-01
Chr07	irgsp1_rep	mRNA	23169768	23173649	.	+	.	ID=Os07t0573300-02;Name=Os07t0573300-02;Locus_id=Os07g0573300;Oryzabase Gene Name Synonym(s)=FYVE finger-containing phosphoinositide kinase;Note=Similar to FYVE finger-containing phosphoinositide kinase (EC 2.7.1.68) (1- phosphatidylinositol-4-phosphate 5-kinase) (PIP5K) (PtdIns(4)P-5- kinase) (PIKfyve) (p235).;Transcript_evidence=AK122181 (DDBJ%2C Best hit);ORF_evidence=NP_564103.1 (RefSeq);GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C FYVE-type (IPR000306),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C FYVE-related (IPR017455);NIAS_FLcDNA=J033149G04;Oryzabase=21960;Expression=AK122181;TENOR=Os07t0573300-02;KEGG=Os07t0573300-02 (EC:2.7.1.68)
Chr07	irgsp1_rep	CDS	23169768	23170108	.	+	0	Parent=Os07t0573300-02
Chr07	irgsp1_rep	CDS	23170524	23170668	.	+	1	Parent=Os07t0573300-02
Chr07	irgsp1_rep	CDS	23170806	23170892	.	+	0	Parent=Os07t0573300-02
Chr07	irgsp1_rep	CDS	23171003	23171134	.	+	0	Parent=Os07t0573300-02
Chr07	irgsp1_rep	CDS	23171714	23171848	.	+	0	Parent=Os07t0573300-02
Chr07	irgsp1_rep	CDS	23172223	23172288	.	+	0	Parent=Os07t0573300-02
Chr07	irgsp1_rep	CDS	23172376	23172486	.	+	0	Parent=Os07t0573300-02
Chr07	irgsp1_rep	CDS	23172816	23172908	.	+	0	Parent=Os07t0573300-02
Chr07	irgsp1_rep	CDS	23173134	23173238	.	+	0	Parent=Os07t0573300-02
Chr07	irgsp1_rep	CDS	23173331	23173408	.	+	0	Parent=Os07t0573300-02
Chr07	irgsp1_rep	three_prime_UTR	23173409	23173649	.	+	.	Parent=Os07t0573300-02
Chr07	irgsp1_rep	mRNA	23178224	23182028	.	+	.	ID=Os07t0573400-01;Name=Os07t0573400-01;Locus_id=Os07g0573400;Note=Protein of unknown function DUF239%2C plant domain containing protein.;Transcript_evidence=AK061739 (DDBJ%2C Best hit);ORF_evidence=NP_001152099.1 (RefSeq);InterPro=Glucoamylase%2C putatuve (IPR004314);NIAS_FLcDNA=001-038-E10;Expression=AK061739;TENOR=Os07t0573400-01;KEGG=Os07t0573400-01
Chr07	irgsp1_rep	five_prime_UTR	23178224	23178444	.	+	.	Parent=Os07t0573400-01
Chr07	irgsp1_rep	CDS	23178445	23178654	.	+	0	Parent=Os07t0573400-01
Chr07	irgsp1_rep	CDS	23179425	23179511	.	+	0	Parent=Os07t0573400-01
Chr07	irgsp1_rep	CDS	23179618	23179869	.	+	0	Parent=Os07t0573400-01
Chr07	irgsp1_rep	CDS	23179978	23180142	.	+	0	Parent=Os07t0573400-01
Chr07	irgsp1_rep	CDS	23180476	23180529	.	+	0	Parent=Os07t0573400-01
Chr07	irgsp1_rep	CDS	23180685	23180831	.	+	0	Parent=Os07t0573400-01
Chr07	irgsp1_rep	CDS	23181393	23181770	.	+	0	Parent=Os07t0573400-01
Chr07	irgsp1_rep	three_prime_UTR	23181771	23182028	.	+	.	Parent=Os07t0573400-01
Chr07	irgsp1_rep	mRNA	23178359	23182807	.	+	.	ID=Os07t0573400-02;Name=Os07t0573400-02;Locus_id=Os07g0573400;Note=Protein of unknown function DUF239%2C plant domain containing protein.;Transcript_evidence=AK102732 (DDBJ%2C Best hit),AK065116 (DDBJ%2C Best hit),AK119637 (DDBJ%2C Best hit),AK121705 (DDBJ%2C Best hit);ORF_evidence=NP_001152099.1 (RefSeq);InterPro=Glucoamylase%2C putatuve (IPR004314);NIAS_FLcDNA=J033106A21,J013001O09,002-130-F04,J033075B20;TENOR=Os07t0573400-02
Chr07	irgsp1_rep	five_prime_UTR	23178359	23178444	.	+	.	Parent=Os07t0573400-02
Chr07	irgsp1_rep	CDS	23178445	23178654	.	+	0	Parent=Os07t0573400-02
Chr07	irgsp1_rep	CDS	23179425	23179511	.	+	0	Parent=Os07t0573400-02
Chr07	irgsp1_rep	CDS	23179618	23179869	.	+	0	Parent=Os07t0573400-02
Chr07	irgsp1_rep	CDS	23179978	23180142	.	+	0	Parent=Os07t0573400-02
Chr07	irgsp1_rep	CDS	23180476	23180529	.	+	0	Parent=Os07t0573400-02
Chr07	irgsp1_rep	CDS	23180685	23180831	.	+	0	Parent=Os07t0573400-02
Chr07	irgsp1_rep	CDS	23181393	23181770	.	+	0	Parent=Os07t0573400-02
Chr07	irgsp1_rep	three_prime_UTR	23181771	23182807	.	+	.	Parent=Os07t0573400-02
Chr07	irgsp1_rep	mRNA	23178491	23182078	.	-	.	ID=Os07t0573450-00;Name=Os07t0573450-00;Locus_id=Os07g0573450;Note=Hypothetical protein.;Transcript_evidence=tplb0062i11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0573450-00
Chr07	irgsp1_rep	five_prime_UTR	23181391	23182078	.	-	.	Parent=Os07t0573450-00
Chr07	irgsp1_rep	five_prime_UTR	23180676	23180829	.	-	.	Parent=Os07t0573450-00
Chr07	irgsp1_rep	five_prime_UTR	23180472	23180522	.	-	.	Parent=Os07t0573450-00
Chr07	irgsp1_rep	five_prime_UTR	23179975	23180138	.	-	.	Parent=Os07t0573450-00
Chr07	irgsp1_rep	five_prime_UTR	23179670	23179866	.	-	.	Parent=Os07t0573450-00
Chr07	irgsp1_rep	CDS	23179611	23179669	.	-	0	Parent=Os07t0573450-00
Chr07	irgsp1_rep	CDS	23179440	23179503	.	-	1	Parent=Os07t0573450-00
Chr07	irgsp1_rep	CDS	23178565	23178669	.	-	0	Parent=Os07t0573450-00
Chr07	irgsp1_rep	three_prime_UTR	23178491	23178564	.	-	.	Parent=Os07t0573450-00
Chr07	irgsp1_rep	mRNA	23183963	23185208	.	+	.	ID=Os07t0573500-01;Name=Os07t0573500-01;Locus_id=Os07g0573500;Note=Hypothetical gene.;Transcript_evidence=AK106040 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-206-D12;Expression=AK106040;TENOR=Os07t0573500-01;KEGG=Os07t0573500-01
Chr07	irgsp1_rep	five_prime_UTR	23183963	23183963	.	+	.	Parent=Os07t0573500-01
Chr07	irgsp1_rep	CDS	23183964	23184198	.	+	0	Parent=Os07t0573500-01
Chr07	irgsp1_rep	CDS	23184302	23184306	.	+	2	Parent=Os07t0573500-01
Chr07	irgsp1_rep	three_prime_UTR	23184307	23185208	.	+	.	Parent=Os07t0573500-01
Chr07	irgsp1_rep	mRNA	23185313	23186925	.	-	.	ID=Os07t0573600-01;Name=Os07t0573600-01;Locus_id=Os07g0573600;Oryzabase Gene Symbol Synonym(s)=OsREX1-S;Oryzabase Gene Name Synonym(s)=required for excision 1-S;Note=Nucleotide excision repair%2C TFIIH%2C subunit TTDA domain containing protein.;Transcript_evidence=AK073925 (DDBJ%2C Best hit);ORF_evidence=NP_001148022.1 (RefSeq);GO=Biological Process: nucleotide-excision repair (GO:0006289),Molecular Function: DNA binding (GO:0003677);InterPro=Nucleotide excision repair%2C TFIIH%2C subunit TTDA (IPR009400);NIAS_FLcDNA=J033072E11;Oryzabase=15660;Expression=AK073925;TENOR=Os07t0573600-01;KEGG=Os07t0573600-01
Chr07	irgsp1_rep	five_prime_UTR	23186907	23186925	.	-	.	Parent=Os07t0573600-01
Chr07	irgsp1_rep	CDS	23186755	23186906	.	-	0	Parent=Os07t0573600-01
Chr07	irgsp1_rep	CDS	23185879	23185944	.	-	1	Parent=Os07t0573600-01
Chr07	irgsp1_rep	CDS	23185611	23185788	.	-	1	Parent=Os07t0573600-01
Chr07	irgsp1_rep	three_prime_UTR	23185313	23185610	.	-	.	Parent=Os07t0573600-01
Chr07	irgsp1_rep	mRNA	23187294	23192344	.	-	.	ID=Os07t0573700-01;Name=Os07t0573700-01;Locus_id=Os07g0573700;Note=Nucleotide-sugar transporter family protein.;Transcript_evidence=AK070473 (DDBJ%2C Best hit);ORF_evidence=NP_001149907.1 (RefSeq);GO=Biological Process: carbohydrate transport (GO:0008643),Biological Process: nucleotide-sugar transport (GO:0015780),Cellular Component: Golgi membrane (GO:0000139),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide-sugar transmembrane transporter activity (GO:0005338),Molecular Function: sugar:hydrogen symporter activity (GO:0005351);InterPro=UDP-galactose transporter (IPR004689),Nucleotide-sugar transporter (IPR007271),UDP/CMP-sugar transporter (IPR021189);NIAS_FLcDNA=J023052O11;Expression=AK070473;TENOR=Os07t0573700-01;KEGG=Os07t0573700-01
Chr07	irgsp1_rep	five_prime_UTR	23192150	23192344	.	-	.	Parent=Os07t0573700-01
Chr07	irgsp1_rep	CDS	23192123	23192149	.	-	0	Parent=Os07t0573700-01
Chr07	irgsp1_rep	CDS	23191119	23191182	.	-	0	Parent=Os07t0573700-01
Chr07	irgsp1_rep	CDS	23190970	23191033	.	-	2	Parent=Os07t0573700-01
Chr07	irgsp1_rep	CDS	23190775	23190886	.	-	1	Parent=Os07t0573700-01
Chr07	irgsp1_rep	CDS	23190581	23190660	.	-	0	Parent=Os07t0573700-01
Chr07	irgsp1_rep	CDS	23190414	23190489	.	-	1	Parent=Os07t0573700-01
Chr07	irgsp1_rep	CDS	23190217	23190317	.	-	0	Parent=Os07t0573700-01
Chr07	irgsp1_rep	CDS	23189674	23189745	.	-	1	Parent=Os07t0573700-01
Chr07	irgsp1_rep	CDS	23189523	23189571	.	-	1	Parent=Os07t0573700-01
Chr07	irgsp1_rep	CDS	23189378	23189419	.	-	0	Parent=Os07t0573700-01
Chr07	irgsp1_rep	CDS	23189159	23189280	.	-	0	Parent=Os07t0573700-01
Chr07	irgsp1_rep	CDS	23189007	23189066	.	-	1	Parent=Os07t0573700-01
Chr07	irgsp1_rep	CDS	23188871	23188919	.	-	1	Parent=Os07t0573700-01
Chr07	irgsp1_rep	CDS	23188000	23188094	.	-	0	Parent=Os07t0573700-01
Chr07	irgsp1_rep	CDS	23187854	23187911	.	-	1	Parent=Os07t0573700-01
Chr07	irgsp1_rep	three_prime_UTR	23187294	23187853	.	-	.	Parent=Os07t0573700-01
Chr07	irgsp1_rep	mRNA	23194354	23199780	.	-	.	ID=Os07t0573800-01;Name=Os07t0573800-01;Locus_id=Os07g0573800;Note=Similar to root border cell-specific protein.;Transcript_evidence=AK121296 (DDBJ%2C Best hit);ORF_evidence=NP_001147711.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: pyridoxamine-phosphate oxidase activity (GO:0004733),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FMN-binding split barrel-related (IPR009002),Pyridoxamine 5'-phosphate oxidase-like%2C FMN-binding domain (IPR011576),FMN-binding split barrel (IPR012349),Haem iron utilisation protein%2C pyridoxamine 5'-phosphate domain-type (IPR014599),Domain of unknown function DUF2470 (IPR019595);NIAS_FLcDNA=J023110F21;Expression=AK121296;TENOR=Os07t0573800-01;KEGG=Os07t0573800-01
Chr07	irgsp1_rep	five_prime_UTR	23197630	23199780	.	-	.	Parent=Os07t0573800-01
Chr07	irgsp1_rep	CDS	23197543	23197629	.	-	0	Parent=Os07t0573800-01
Chr07	irgsp1_rep	CDS	23197357	23197455	.	-	0	Parent=Os07t0573800-01
Chr07	irgsp1_rep	CDS	23196955	23197050	.	-	0	Parent=Os07t0573800-01
Chr07	irgsp1_rep	CDS	23196765	23196830	.	-	0	Parent=Os07t0573800-01
Chr07	irgsp1_rep	CDS	23196587	23196677	.	-	0	Parent=Os07t0573800-01
Chr07	irgsp1_rep	CDS	23196272	23196339	.	-	2	Parent=Os07t0573800-01
Chr07	irgsp1_rep	CDS	23196107	23196173	.	-	0	Parent=Os07t0573800-01
Chr07	irgsp1_rep	CDS	23195211	23195260	.	-	2	Parent=Os07t0573800-01
Chr07	irgsp1_rep	CDS	23194736	23194800	.	-	0	Parent=Os07t0573800-01
Chr07	irgsp1_rep	CDS	23194523	23194589	.	-	1	Parent=Os07t0573800-01
Chr07	irgsp1_rep	three_prime_UTR	23194354	23194522	.	-	.	Parent=Os07t0573800-01
Chr07	irgsp1_rep	mRNA	23194229	23199001	.	-	.	ID=Os07t0573800-02;Name=Os07t0573800-02;Locus_id=Os07g0573800;Note=FMN-binding split barrel domain containing protein.;Transcript_evidence=AK072835 (DDBJ%2C Best hit);ORF_evidence=NP_001147711.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: pyridoxamine-phosphate oxidase activity (GO:0004733),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FMN-binding split barrel-related (IPR009002),Pyridoxamine 5&apos%3B-phosphate oxidase-like%2C FMN-binding domain (IPR011576),FMN-binding split barrel (IPR012349),Haem iron utilisation protein%2C pyridoxamine 5&apos%3B-phosphate domain-type (IPR014599),Domain of unknown function DUF2470 (IPR019595);NIAS_FLcDNA=J023134F17;Expression=AK072835;TENOR=Os07t0573800-02;KEGG=Os07t0573800-02
Chr07	irgsp1_rep	five_prime_UTR	23198905	23199001	.	-	.	Parent=Os07t0573800-02
Chr07	irgsp1_rep	CDS	23198698	23198904	.	-	0	Parent=Os07t0573800-02
Chr07	irgsp1_rep	CDS	23198499	23198564	.	-	0	Parent=Os07t0573800-02
Chr07	irgsp1_rep	CDS	23197543	23197629	.	-	0	Parent=Os07t0573800-02
Chr07	irgsp1_rep	CDS	23197357	23197455	.	-	0	Parent=Os07t0573800-02
Chr07	irgsp1_rep	CDS	23196955	23197050	.	-	0	Parent=Os07t0573800-02
Chr07	irgsp1_rep	CDS	23196765	23196830	.	-	0	Parent=Os07t0573800-02
Chr07	irgsp1_rep	CDS	23196587	23196677	.	-	0	Parent=Os07t0573800-02
Chr07	irgsp1_rep	CDS	23196272	23196339	.	-	2	Parent=Os07t0573800-02
Chr07	irgsp1_rep	CDS	23196107	23196173	.	-	0	Parent=Os07t0573800-02
Chr07	irgsp1_rep	CDS	23195211	23195260	.	-	2	Parent=Os07t0573800-02
Chr07	irgsp1_rep	CDS	23194736	23194800	.	-	0	Parent=Os07t0573800-02
Chr07	irgsp1_rep	CDS	23194523	23194589	.	-	1	Parent=Os07t0573800-02
Chr07	irgsp1_rep	three_prime_UTR	23194229	23194522	.	-	.	Parent=Os07t0573800-02
Chr07	irgsp1_rep	mRNA	23194358	23198972	.	-	.	ID=Os07t0573800-03;Name=Os07t0573800-03;Locus_id=Os07g0573800;Note=FMN-binding split barrel domain containing protein.;Transcript_evidence=AK104154 (DDBJ%2C Best hit),AK104308 (DDBJ%2C Best hit);ORF_evidence=NP_001147711.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: pyridoxamine-phosphate oxidase activity (GO:0004733),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FMN-binding split barrel-related (IPR009002),Pyridoxamine 5&apos%3B-phosphate oxidase-like%2C FMN-binding domain (IPR011576),FMN-binding split barrel (IPR012349),Haem iron utilisation protein%2C pyridoxamine 5&apos%3B-phosphate domain-type (IPR014599),Domain of unknown function DUF2470 (IPR019595);NIAS_FLcDNA=006-210-B07,001-012-H04;Expression=AK104154;TENOR=Os07t0573800-03;KEGG=Os07t0573800-03
Chr07	irgsp1_rep	five_prime_UTR	23198905	23198972	.	-	.	Parent=Os07t0573800-03
Chr07	irgsp1_rep	CDS	23198698	23198904	.	-	0	Parent=Os07t0573800-03
Chr07	irgsp1_rep	CDS	23198499	23198564	.	-	0	Parent=Os07t0573800-03
Chr07	irgsp1_rep	CDS	23197543	23197629	.	-	0	Parent=Os07t0573800-03
Chr07	irgsp1_rep	CDS	23197357	23197455	.	-	0	Parent=Os07t0573800-03
Chr07	irgsp1_rep	CDS	23196955	23197050	.	-	0	Parent=Os07t0573800-03
Chr07	irgsp1_rep	CDS	23196765	23196830	.	-	0	Parent=Os07t0573800-03
Chr07	irgsp1_rep	CDS	23196587	23196677	.	-	0	Parent=Os07t0573800-03
Chr07	irgsp1_rep	CDS	23196272	23196339	.	-	2	Parent=Os07t0573800-03
Chr07	irgsp1_rep	CDS	23196107	23196173	.	-	0	Parent=Os07t0573800-03
Chr07	irgsp1_rep	CDS	23195211	23195260	.	-	2	Parent=Os07t0573800-03
Chr07	irgsp1_rep	CDS	23194736	23194800	.	-	0	Parent=Os07t0573800-03
Chr07	irgsp1_rep	CDS	23194523	23194589	.	-	1	Parent=Os07t0573800-03
Chr07	irgsp1_rep	three_prime_UTR	23194358	23194522	.	-	.	Parent=Os07t0573800-03
Chr07	irgsp1_rep	mRNA	23198266	23198907	.	-	.	ID=Os07t0573800-04;Name=Os07t0573800-04;Locus_id=Os07g0573800;Note=Hypothetical protein.;Transcript_evidence=AK107962 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-135-C10;TENOR=Os07t0573800-04;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	23198906	23198907	.	-	.	Parent=Os07t0573800-04
Chr07	irgsp1_rep	CDS	23198698	23198905	.	-	0	Parent=Os07t0573800-04
Chr07	irgsp1_rep	CDS	23198437	23198564	.	-	2	Parent=Os07t0573800-04
Chr07	irgsp1_rep	three_prime_UTR	23198266	23198436	.	-	.	Parent=Os07t0573800-04
Chr07	irgsp1_rep	mRNA	23202739	23203255	.	+	.	ID=Os07t0573900-00;Name=Os07t0573900-00;Locus_id=Os07g0573900;CGSNL Gene Symbol=AGP27;CGSNL Gene Name=ARABINOGALACTAN PROTEIN 27;Oryzabase Gene Symbol Synonym(s)=OsAGP27;Oryzabase Gene Name Synonym(s)=Arabinogalactan protein 27;Note=Hypothetical conserved gene.;Transcript_evidence=CT836098 (DDBJ%2C Best hit);ORF_evidence=NP_001060071.2 (RefSeq);Oryzabase=11320;TENOR=Os07t0573900-00;KEGG=Os07t0573900-00
Chr07	irgsp1_rep	CDS	23202739	23202999	.	+	0	Parent=Os07t0573900-00
Chr07	irgsp1_rep	three_prime_UTR	23203000	23203255	.	+	.	Parent=Os07t0573900-00
Chr07	irgsp1_rep	mRNA	23208713	23210830	.	-	.	ID=Os07t0574100-00;Name=Os07t0574100-00;Locus_id=Os07g0574100;Note=Similar to receptor-kinase isolog.;Transcript_evidence=BT083633 (DDBJ);ORF_evidence=NP_001151891.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os07t0574100-00;KEGG=Os07t0574100-00
Chr07	irgsp1_rep	five_prime_UTR	23210603	23210830	.	-	.	Parent=Os07t0574100-00
Chr07	irgsp1_rep	CDS	23209360	23210602	.	-	0	Parent=Os07t0574100-00
Chr07	irgsp1_rep	CDS	23208713	23209269	.	-	2	Parent=Os07t0574100-00
Chr07	irgsp1_rep	mRNA	23209009	23209629	.	+	.	ID=Os07t0574150-00;Name=Os07t0574150-00;Locus_id=Os07g0574150;Note=Hypothetical protein.;Transcript_evidence=EU951884 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0574150-00
Chr07	irgsp1_rep	five_prime_UTR	23209009	23209009	.	+	.	Parent=Os07t0574150-00
Chr07	irgsp1_rep	CDS	23209010	23209243	.	+	0	Parent=Os07t0574150-00
Chr07	irgsp1_rep	CDS	23209338	23209406	.	+	0	Parent=Os07t0574150-00
Chr07	irgsp1_rep	three_prime_UTR	23209407	23209629	.	+	.	Parent=Os07t0574150-00
Chr07	irgsp1_rep	mRNA	23213439	23214991	.	+	.	ID=Os07t0574200-00;Name=Os07t0574200-00;Locus_id=Os07g0574200;Note=Ubiquitin supergroup domain containing protein.;Transcript_evidence=EU972055 (DDBJ);ORF_evidence=Q6ZL10 (UniProt);InterPro=Ubiquitin supergroup (IPR019955),Small ubiquitin-related modifier%2C SUMO (IPR022617);TENOR=Os07t0574200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	23213439	23213882	.	+	0	Parent=Os07t0574200-00
Chr07	irgsp1_rep	CDS	23214659	23214991	.	+	0	Parent=Os07t0574200-00
Chr07	irgsp1_rep	mRNA	23217096	23220950	.	+	.	ID=Os07t0574400-01;Name=Os07t0574400-01;Locus_id=Os07g0574400;CGSNL Gene Symbol=SLL2;CGSNL Gene Name=SHALLOT-LIKE 2;Oryzabase Gene Symbol Synonym(s)=OsSLL2;Oryzabase Gene Name Synonym(s)=shallot-like 2;Note=Hypothetical gene.;Transcript_evidence=AK061367 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=006-304-D07;Oryzabase=22665;Expression=AK061367;TENOR=Os07t0574400-01;KEGG=Os07t0574400-01
Chr07	irgsp1_rep	five_prime_UTR	23217096	23217097	.	+	.	Parent=Os07t0574400-01
Chr07	irgsp1_rep	CDS	23217098	23217490	.	+	0	Parent=Os07t0574400-01
Chr07	irgsp1_rep	three_prime_UTR	23217491	23217640	.	+	.	Parent=Os07t0574400-01
Chr07	irgsp1_rep	three_prime_UTR	23217979	23218051	.	+	.	Parent=Os07t0574400-01
Chr07	irgsp1_rep	three_prime_UTR	23220515	23220950	.	+	.	Parent=Os07t0574400-01
Chr07	irgsp1_rep	mRNA	23227384	23227979	.	+	.	ID=Os07t0574500-01;Name=Os07t0574500-01;Locus_id=Os07g0574500;CGSNL Gene Symbol=SUMO3;CGSNL Gene Name=SMALL UBIQUITIN LIKE MODIFIER 3;Oryzabase Gene Symbol Synonym(s)=OsSUMO3;Oryzabase Gene Name Synonym(s)=Ubiquitin domain-containing protein%2C small ubiquitin like modifier 3%2C small ubiquitin like modifier protein 3%2C SUMO protein 3;Note=Ubiquitin domain containing protein.;Transcript_evidence=AK107923 (DDBJ%2C Best hit);ORF_evidence=B8YBH7 (UniProt);InterPro=Ubiquitin supergroup (IPR019955),Small ubiquitin-related modifier%2C SUMO (IPR022617);NIAS_FLcDNA=002-134-H06;Oryzabase=22029;Expression=AK107923;TENOR=Os07t0574500-01;KEGG=Os07t0574500-01
Chr07	irgsp1_rep	five_prime_UTR	23227384	23227446	.	+	.	Parent=Os07t0574500-01
Chr07	irgsp1_rep	CDS	23227447	23227779	.	+	0	Parent=Os07t0574500-01
Chr07	irgsp1_rep	three_prime_UTR	23227780	23227979	.	+	.	Parent=Os07t0574500-01
Chr07	irgsp1_rep	mRNA	23233744	23234358	.	+	.	ID=Os07t0574600-00;Name=Os07t0574600-00;Locus_id=Os07g0574600;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6ZL06 (UniProt);TENOR=Os07t0574600-00;KEGG=Os07t0574600-00
Chr07	irgsp1_rep	CDS	23233744	23234358	.	+	0	Parent=Os07t0574600-00
Chr07	irgsp1_rep	mRNA	23243797	23247107	.	+	.	ID=Os07t0574800-01;Name=Os07t0574800-01;Locus_id=Os07g0574800;CGSNL Gene Symbol=TUBA1;CGSNL Gene Name=TUBULIN ALPHA-1 CHAIN;Oryzabase Gene Symbol Synonym(s)=OsTubA1%2C TubA1%2C OS-TubA3%2C TubA3;Oryzabase Gene Name Synonym(s)=Tubulin alpha-1 chain%2C Tubulin alpha-1;Note=Tubulin alpha-1 chain.;Transcript_evidence=AK069140 (DDBJ%2C Best hit),AK104900 (DDBJ%2C Best hit);ORF_evidence=P28752 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: microtubule-based process (GO:0007017),Biological Process: microtubule-based movement (GO:0007018),Biological Process: protein polymerization (GO:0051258),Cellular Component: microtubule (GO:0005874),Cellular Component: protein complex (GO:0043234),Molecular Function: GTPase activity (GO:0003924),Molecular Function: structural molecule activity (GO:0005198),Molecular Function: GTP binding (GO:0005525);InterPro=Tubulin (IPR000217),Alpha tubulin (IPR002452),Tubulin/FtsZ%2C GTPase domain (IPR003008),Tubulin/FtsZ%2C C-terminal (IPR008280),Beta tubulin%2C autoregulation binding site (IPR013838),Tubulin%2C conserved site (IPR017975),Tubulin/FtsZ%2C 2-layer sandwich domain (IPR018316),Tubulin%2C C-terminal (IPR023123);NIAS_FLcDNA=J023006G21,001-046-C09;Oryzabase=6300;TENOR=Os07t0574800-01
Chr07	irgsp1_rep	five_prime_UTR	23243797	23243922	.	+	.	Parent=Os07t0574800-01
Chr07	irgsp1_rep	CDS	23243923	23244035	.	+	0	Parent=Os07t0574800-01
Chr07	irgsp1_rep	CDS	23244946	23245160	.	+	1	Parent=Os07t0574800-01
Chr07	irgsp1_rep	CDS	23245242	23245441	.	+	2	Parent=Os07t0574800-01
Chr07	irgsp1_rep	CDS	23245999	23246507	.	+	0	Parent=Os07t0574800-01
Chr07	irgsp1_rep	CDS	23246627	23246942	.	+	1	Parent=Os07t0574800-01
Chr07	irgsp1_rep	three_prime_UTR	23246943	23247107	.	+	.	Parent=Os07t0574800-01
Chr07	irgsp1_rep	mRNA	23243824	23247215	.	+	.	ID=Os07t0574800-02;Name=Os07t0574800-02;Locus_id=Os07g0574800;CGSNL Gene Symbol=TUBA1;CGSNL Gene Name=TUBULIN ALPHA-1 CHAIN;Oryzabase Gene Symbol Synonym(s)=OsTubA1%2C TubA1%2C OS-TubA3%2C TubA3;Oryzabase Gene Name Synonym(s)=Tubulin alpha-1 chain%2C Tubulin alpha-1;Note=Tubulin alpha-1 chain.;Transcript_evidence=AK067721 (DDBJ%2C Best hit);ORF_evidence=P28752 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: microtubule-based process (GO:0007017),Biological Process: microtubule-based movement (GO:0007018),Biological Process: protein polymerization (GO:0051258),Cellular Component: microtubule (GO:0005874),Cellular Component: protein complex (GO:0043234),Molecular Function: GTPase activity (GO:0003924),Molecular Function: structural molecule activity (GO:0005198),Molecular Function: GTP binding (GO:0005525);InterPro=Tubulin (IPR000217),Alpha tubulin (IPR002452),Tubulin/FtsZ%2C GTPase domain (IPR003008),Tubulin/FtsZ%2C C-terminal (IPR008280),Beta tubulin%2C autoregulation binding site (IPR013838),Tubulin%2C conserved site (IPR017975),Tubulin/FtsZ%2C 2-layer sandwich domain (IPR018316),Tubulin%2C C-terminal (IPR023123);NIAS_FLcDNA=J013119N24;Oryzabase=6300;Expression=AK067721;TENOR=Os07t0574800-02;KEGG=Os07t0574800-02
Chr07	irgsp1_rep	five_prime_UTR	23243824	23243922	.	+	.	Parent=Os07t0574800-02
Chr07	irgsp1_rep	CDS	23243923	23244035	.	+	0	Parent=Os07t0574800-02
Chr07	irgsp1_rep	CDS	23244946	23245160	.	+	1	Parent=Os07t0574800-02
Chr07	irgsp1_rep	CDS	23245242	23245441	.	+	2	Parent=Os07t0574800-02
Chr07	irgsp1_rep	CDS	23245999	23246507	.	+	0	Parent=Os07t0574800-02
Chr07	irgsp1_rep	CDS	23246627	23246942	.	+	1	Parent=Os07t0574800-02
Chr07	irgsp1_rep	three_prime_UTR	23246943	23247215	.	+	.	Parent=Os07t0574800-02
Chr07	irgsp1_rep	mRNA	23245050	23246186	.	-	.	ID=Os07t0574850-00;Name=Os07t0574850-00;Locus_id=Os07g0574850;Note=Non-protein coding transcript.;Transcript_evidence=EU941142 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0574850-00
Chr07	irgsp1_rep	exon	23246007	23246186	.	-	.	Parent=Os07t0574850-00
Chr07	irgsp1_rep	exon	23245239	23245447	.	-	.	Parent=Os07t0574850-00
Chr07	irgsp1_rep	exon	23245050	23245157	.	-	.	Parent=Os07t0574850-00
Chr07	irgsp1_rep	mRNA	23248080	23248647	.	-	.	ID=Os07t0574900-01;Name=Os07t0574900-01;Locus_id=Os07g0574900;Note=Similar to C3H transcription factor.;Transcript_evidence=AK111263 (DDBJ%2C Best hit);ORF_evidence=B7EQW0 (UniProt);NIAS_FLcDNA=002-180-F04;TENOR=Os07t0574900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	23248603	23248647	.	-	.	Parent=Os07t0574900-01
Chr07	irgsp1_rep	CDS	23248351	23248602	.	-	0	Parent=Os07t0574900-01
Chr07	irgsp1_rep	three_prime_UTR	23248080	23248350	.	-	.	Parent=Os07t0574900-01
Chr07	irgsp1_rep	mRNA	23251004	23252291	.	-	.	ID=Os07t0575000-00;Name=Os07t0575000-00;Locus_id=Os07g0575000;CGSNL Gene Symbol=ERF6;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 6;Oryzabase Gene Symbol Synonym(s)=OsERF#006%2C OsERF006%2C OsERF6%2C AP2/EREBP#075%2C AP2/EREBP75;Oryzabase Gene Name Synonym(s)=ethylene response factor 6%2C APETALA2/ethylene-responsive element binding protein 75;Note=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding domain containing protein.;Transcript_evidence=AK374106 (DDBJ);ORF_evidence=Q6ZL38 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);Oryzabase=10533;TENOR=Os07t0575000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	23252285	23252291	.	-	.	Parent=Os07t0575000-00
Chr07	irgsp1_rep	CDS	23251347	23252284	.	-	0	Parent=Os07t0575000-00
Chr07	irgsp1_rep	CDS	23251004	23251292	.	-	1	Parent=Os07t0575000-00
Chr07	irgsp1_rep	mRNA	23256517	23265421	.	-	.	ID=Os07t0575100-00;Name=Os07t0575100-00;Locus_id=Os07g0575100;Note=Similar to predicted protein.;Transcript_evidence=tplb0006k18 (Wheat FLcDNA);ORF_evidence=XP_002873965.1 (RefSeq);GO=Biological Process: intracellular protein transport (GO:0006886),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515),Molecular Function: protein transporter activity (GO:0008565);InterPro=HEAT (IPR000357),Importin-beta%2C N-terminal (IPR001494),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);TENOR=Os07t0575100-00;KEGG=Os07t0575100-00
Chr07	irgsp1_rep	five_prime_UTR	23265295	23265421	.	-	.	Parent=Os07t0575100-00
Chr07	irgsp1_rep	CDS	23264041	23265294	.	-	0	Parent=Os07t0575100-00
Chr07	irgsp1_rep	CDS	23263508	23263711	.	-	0	Parent=Os07t0575100-00
Chr07	irgsp1_rep	CDS	23262808	23262912	.	-	0	Parent=Os07t0575100-00
Chr07	irgsp1_rep	CDS	23262642	23262707	.	-	0	Parent=Os07t0575100-00
Chr07	irgsp1_rep	CDS	23262344	23262508	.	-	0	Parent=Os07t0575100-00
Chr07	irgsp1_rep	CDS	23262185	23262259	.	-	0	Parent=Os07t0575100-00
Chr07	irgsp1_rep	CDS	23261957	23262108	.	-	0	Parent=Os07t0575100-00
Chr07	irgsp1_rep	CDS	23261394	23261529	.	-	1	Parent=Os07t0575100-00
Chr07	irgsp1_rep	CDS	23261241	23261310	.	-	0	Parent=Os07t0575100-00
Chr07	irgsp1_rep	CDS	23261034	23261161	.	-	2	Parent=Os07t0575100-00
Chr07	irgsp1_rep	CDS	23260895	23260951	.	-	0	Parent=Os07t0575100-00
Chr07	irgsp1_rep	CDS	23259916	23260101	.	-	0	Parent=Os07t0575100-00
Chr07	irgsp1_rep	CDS	23259640	23259732	.	-	0	Parent=Os07t0575100-00
Chr07	irgsp1_rep	CDS	23258935	23259020	.	-	0	Parent=Os07t0575100-00
Chr07	irgsp1_rep	CDS	23258791	23258857	.	-	1	Parent=Os07t0575100-00
Chr07	irgsp1_rep	CDS	23258629	23258695	.	-	0	Parent=Os07t0575100-00
Chr07	irgsp1_rep	CDS	23258399	23258535	.	-	2	Parent=Os07t0575100-00
Chr07	irgsp1_rep	CDS	23257350	23257441	.	-	0	Parent=Os07t0575100-00
Chr07	irgsp1_rep	CDS	23257206	23257272	.	-	1	Parent=Os07t0575100-00
Chr07	irgsp1_rep	CDS	23256745	23256909	.	-	0	Parent=Os07t0575100-00
Chr07	irgsp1_rep	three_prime_UTR	23256517	23256744	.	-	.	Parent=Os07t0575100-00
Chr07	irgsp1_rep	mRNA	23272326	23272649	.	+	.	ID=Os07t0575366-00;Name=Os07t0575366-00;Locus_id=Os07g0575366;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6ZL35 (UniProt);TENOR=Os07t0575366-00
Chr07	irgsp1_rep	CDS	23272326	23272649	.	+	0	Parent=Os07t0575366-00
Chr07	irgsp1_rep	mRNA	23274457	23276634	.	-	.	ID=Os07t0575500-00;Name=Os07t0575500-00;Locus_id=Os07g0575500;Note=Similar to beta-hexosaminidase.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001147095.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: beta-N-acetylhexosaminidase activity (GO:0004563),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 20 (IPR001540),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Acetylhexosaminidase%2C subunit a/b (IPR015882),Glycoside hydrolase%2C family 20%2C catalytic core (IPR015883),Glycoside hydrolase%2C superfamily (IPR017853);TENOR=Os07t0575500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	23275743	23276634	.	-	0	Parent=Os07t0575500-00
Chr07	irgsp1_rep	CDS	23274457	23275400	.	-	2	Parent=Os07t0575500-00
Chr07	irgsp1_rep	mRNA	23274693	23276627	.	+	.	ID=Os07t0575550-00;Name=Os07t0575550-00;Locus_id=Os07g0575550;Note=Hypothetical protein.;Transcript_evidence=AK376451 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0575550-00
Chr07	irgsp1_rep	five_prime_UTR	23274693	23274693	.	+	.	Parent=Os07t0575550-00
Chr07	irgsp1_rep	CDS	23274694	23275404	.	+	0	Parent=Os07t0575550-00
Chr07	irgsp1_rep	three_prime_UTR	23275405	23275492	.	+	.	Parent=Os07t0575550-00
Chr07	irgsp1_rep	three_prime_UTR	23275728	23276627	.	+	.	Parent=Os07t0575550-00
Chr07	irgsp1_rep	mRNA	23279616	23281103	.	-	.	ID=Os07t0575600-01;Name=Os07t0575600-01;Locus_id=Os07g0575600;Note=Similar to Lectin receptor-type kinase.;Transcript_evidence=AK110940 (DDBJ%2C Best hit);ORF_evidence=B8XSN7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine-threonine/tyrosine-protein kinase (IPR001245),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Legume lectin%2C beta chain%2C Mn/Ca-binding site (IPR019825);NIAS_FLcDNA=002-173-G10;Expression=AK110940;TENOR=Os07t0575600-01;KEGG=Os07t0575600-01
Chr07	irgsp1_rep	five_prime_UTR	23280954	23281103	.	-	.	Parent=Os07t0575600-01
Chr07	irgsp1_rep	CDS	23279616	23280953	.	-	0	Parent=Os07t0575600-01
Chr07	irgsp1_rep	mRNA	23278788	23280964	.	-	.	ID=Os07t0575600-02;Name=Os07t0575600-02;Locus_id=Os07g0575600;Note=Similar to Lectin-like receptor kinase 7%3B2.;Transcript_evidence=AK101924 (DDBJ%2C Best hit);ORF_evidence=B8XSN7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Legume lectin%2C beta chain%2C Mn/Ca-binding site (IPR019825);NIAS_FLcDNA=J033071P06;Expression=AK101924;TENOR=Os07t0575600-02;KEGG=Os07t0575600-02
Chr07	irgsp1_rep	five_prime_UTR	23280954	23280964	.	-	.	Parent=Os07t0575600-02
Chr07	irgsp1_rep	CDS	23278860	23280953	.	-	0	Parent=Os07t0575600-02
Chr07	irgsp1_rep	three_prime_UTR	23278788	23278859	.	-	.	Parent=Os07t0575600-02
Chr07	irgsp1_rep	mRNA	23282761	23284948	.	-	.	ID=Os07t0575700-01;Name=Os07t0575700-01;Locus_id=Os07g0575700;Oryzabase Gene Symbol Synonym(s)=SIT3;Oryzabase Gene Name Synonym(s)=Salt Intolerance 3;Note=Similar to Lectin-like receptor kinase 7%3B2.;Transcript_evidence=AK105111 (DDBJ%2C Best hit);ORF_evidence=E7CWB5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-100-F11;Oryzabase=18337;Expression=AK105111;TENOR=Os07t0575700-01;KEGG=Os07t0575700-01
Chr07	irgsp1_rep	five_prime_UTR	23284893	23284948	.	-	.	Parent=Os07t0575700-01
Chr07	irgsp1_rep	CDS	23282877	23284892	.	-	0	Parent=Os07t0575700-01
Chr07	irgsp1_rep	three_prime_UTR	23282761	23282876	.	-	.	Parent=Os07t0575700-01
Chr07	irgsp1_rep	mRNA	23284615	23285046	.	+	.	ID=Os07t0575733-00;Name=Os07t0575733-00;Locus_id=Os07g0575733;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001053398.1 (RefSeq);TENOR=Os07t0575733-00
Chr07	irgsp1_rep	CDS	23284615	23285046	.	+	0	Parent=Os07t0575733-00
Chr07	irgsp1_rep	mRNA	23289173	23291356	.	-	.	ID=Os07t0575750-00;Name=Os07t0575750-00;Locus_id=Os07g0575750;Note=Similar to Lectin receptor-type kinase.;Transcript_evidence=AK362467 (DDBJ);ORF_evidence=B8XSN7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os07t0575750-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	23289278	23291356	.	-	0	Parent=Os07t0575750-00
Chr07	irgsp1_rep	three_prime_UTR	23289173	23289277	.	-	.	Parent=Os07t0575750-00
Chr07	irgsp1_rep	mRNA	23294530	23296803	.	+	.	ID=Os07t0575800-01;Name=Os07t0575800-01;Locus_id=Os07g0575800;CGSNL Gene Symbol=NHL2;CGSNL Gene Name=NYC3-LIKE 2;Note=Similar to hydrolase%2C alpha/beta fold family protein.;Transcript_evidence=AK060302 (DDBJ%2C Best hit);ORF_evidence=NP_568381.1 (RefSeq);NIAS_FLcDNA=001-006-H10;Oryzabase=8685;TENOR=Os07t0575800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	23294530	23294572	.	+	0	Parent=Os07t0575800-01
Chr07	irgsp1_rep	CDS	23295164	23295308	.	+	2	Parent=Os07t0575800-01
Chr07	irgsp1_rep	CDS	23295388	23295460	.	+	1	Parent=Os07t0575800-01
Chr07	irgsp1_rep	CDS	23295744	23295890	.	+	0	Parent=Os07t0575800-01
Chr07	irgsp1_rep	CDS	23295990	23296115	.	+	0	Parent=Os07t0575800-01
Chr07	irgsp1_rep	CDS	23296232	23296291	.	+	0	Parent=Os07t0575800-01
Chr07	irgsp1_rep	three_prime_UTR	23296292	23296415	.	+	.	Parent=Os07t0575800-01
Chr07	irgsp1_rep	three_prime_UTR	23296509	23296803	.	+	.	Parent=Os07t0575800-01
Chr07	irgsp1_rep	mRNA	23299573	23301820	.	+	.	ID=Os07t0575900-01;Name=Os07t0575900-01;Locus_id=Os07g0575900;Note=Protein of unknown function DUF946%2C plant family protein.;Transcript_evidence=AK105640 (DDBJ%2C Best hit);ORF_evidence=B9FY25 (UniProt);InterPro=Vacuolar protein sorting-associated protein 62 (IPR009291);NIAS_FLcDNA=001-200-E05;Expression=AK105640;TENOR=Os07t0575900-01;KEGG=Os07t0575900-01
Chr07	irgsp1_rep	five_prime_UTR	23299573	23300086	.	+	.	Parent=Os07t0575900-01
Chr07	irgsp1_rep	CDS	23300087	23301655	.	+	0	Parent=Os07t0575900-01
Chr07	irgsp1_rep	three_prime_UTR	23301656	23301820	.	+	.	Parent=Os07t0575900-01
Chr07	irgsp1_rep	mRNA	23302454	23309676	.	+	.	ID=Os07t0576000-01;Name=Os07t0576000-01;Locus_id=Os07g0576000;Note=UbiA prenyltransferase family protein.;Transcript_evidence=AK072012 (DDBJ%2C Best hit);ORF_evidence=B6T6U8 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021),Molecular Function: prenyltransferase activity (GO:0004659);InterPro=UbiA prenyltransferase family (IPR000537);NIAS_FLcDNA=J013100A22;Expression=AK072012;TENOR=Os07t0576000-01;KEGG=Os07t0576000-01
Chr07	irgsp1_rep	five_prime_UTR	23302454	23302618	.	+	.	Parent=Os07t0576000-01
Chr07	irgsp1_rep	CDS	23302619	23302807	.	+	0	Parent=Os07t0576000-01
Chr07	irgsp1_rep	CDS	23304032	23304153	.	+	0	Parent=Os07t0576000-01
Chr07	irgsp1_rep	CDS	23304233	23304379	.	+	1	Parent=Os07t0576000-01
Chr07	irgsp1_rep	CDS	23304511	23304736	.	+	1	Parent=Os07t0576000-01
Chr07	irgsp1_rep	CDS	23305342	23305415	.	+	0	Parent=Os07t0576000-01
Chr07	irgsp1_rep	CDS	23305589	23305681	.	+	1	Parent=Os07t0576000-01
Chr07	irgsp1_rep	CDS	23307012	23307129	.	+	1	Parent=Os07t0576000-01
Chr07	irgsp1_rep	CDS	23307919	23307981	.	+	0	Parent=Os07t0576000-01
Chr07	irgsp1_rep	CDS	23308353	23308385	.	+	0	Parent=Os07t0576000-01
Chr07	irgsp1_rep	CDS	23308904	23308978	.	+	0	Parent=Os07t0576000-01
Chr07	irgsp1_rep	three_prime_UTR	23308979	23308980	.	+	.	Parent=Os07t0576000-01
Chr07	irgsp1_rep	three_prime_UTR	23309128	23309676	.	+	.	Parent=Os07t0576000-01
Chr07	irgsp1_rep	mRNA	23302573	23309675	.	+	.	ID=Os07t0576000-02;Name=Os07t0576000-02;Locus_id=Os07g0576000;Note=Homogentisic acid geranylgeranyl transferase.;Transcript_evidence=AK102382 (DDBJ%2C Best hit);ORF_evidence=B6T6U8 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021),Molecular Function: prenyltransferase activity (GO:0004659);InterPro=UbiA prenyltransferase family (IPR000537);NIAS_FLcDNA=J033092C04;Expression=AK102382;TENOR=Os07t0576000-02;KEGG=Os07t0576000-02
Chr07	irgsp1_rep	CDS	23302573	23302807	.	+	0	Parent=Os07t0576000-02
Chr07	irgsp1_rep	CDS	23304032	23304155	.	+	2	Parent=Os07t0576000-02
Chr07	irgsp1_rep	CDS	23304233	23304379	.	+	1	Parent=Os07t0576000-02
Chr07	irgsp1_rep	CDS	23304511	23304736	.	+	1	Parent=Os07t0576000-02
Chr07	irgsp1_rep	CDS	23305342	23305415	.	+	0	Parent=Os07t0576000-02
Chr07	irgsp1_rep	CDS	23305589	23305681	.	+	1	Parent=Os07t0576000-02
Chr07	irgsp1_rep	CDS	23307012	23307129	.	+	1	Parent=Os07t0576000-02
Chr07	irgsp1_rep	CDS	23307919	23307981	.	+	0	Parent=Os07t0576000-02
Chr07	irgsp1_rep	CDS	23308353	23308385	.	+	0	Parent=Os07t0576000-02
Chr07	irgsp1_rep	CDS	23308904	23308978	.	+	0	Parent=Os07t0576000-02
Chr07	irgsp1_rep	three_prime_UTR	23308979	23308980	.	+	.	Parent=Os07t0576000-02
Chr07	irgsp1_rep	three_prime_UTR	23309128	23309675	.	+	.	Parent=Os07t0576000-02
Chr07	irgsp1_rep	mRNA	23308948	23309676	.	+	.	ID=Os07t0576000-03;Name=Os07t0576000-03;Locus_id=Os07g0576000;Note=Non-protein coding transcript.;Transcript_evidence=AK063129 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-111-F05;TENOR=Os07t0576000-03
Chr07	irgsp1_rep	exon	23308948	23308980	.	+	.	Parent=Os07t0576000-03
Chr07	irgsp1_rep	exon	23309128	23309676	.	+	.	Parent=Os07t0576000-03
Chr07	irgsp1_rep	mRNA	23314373	23319116	.	+	.	ID=Os07t0576100-00;Name=Os07t0576100-00;Locus_id=Os07g0576100;CGSNL Gene Symbol=GH3-10;CGSNL Gene Name=GH3-10;Oryzabase Gene Symbol Synonym(s)=OsGH3-10;Oryzabase Gene Name Synonym(s)=indole-3-acetic acid-amido synthetase GH3.10;Note=Similar to indole-3-acetic acid amido synthetase.;Transcript_evidence=FP098375 (DDBJ);ORF_evidence=NP_001146837.1 (RefSeq);InterPro=GH3 auxin-responsive promoter (IPR004993);Oryzabase=11628;TENOR=Os07t0576100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	23314373	23314481	.	+	.	Parent=Os07t0576100-00
Chr07	irgsp1_rep	CDS	23314482	23314933	.	+	0	Parent=Os07t0576100-00
Chr07	irgsp1_rep	CDS	23318111	23318597	.	+	1	Parent=Os07t0576100-00
Chr07	irgsp1_rep	three_prime_UTR	23318598	23319116	.	+	.	Parent=Os07t0576100-00
Chr07	irgsp1_rep	mRNA	23314534	23319116	.	-	.	ID=Os07t0576300-00;Name=Os07t0576300-00;Locus_id=Os07g0576300;Note=Hypothetical protein.;Transcript_evidence=tplb0045h20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0576300-00
Chr07	irgsp1_rep	five_prime_UTR	23318100	23319116	.	-	.	Parent=Os07t0576300-00
Chr07	irgsp1_rep	five_prime_UTR	23314871	23314924	.	-	.	Parent=Os07t0576300-00
Chr07	irgsp1_rep	CDS	23314534	23314870	.	-	0	Parent=Os07t0576300-00
Chr07	irgsp1_rep	mRNA	23325199	23327227	.	-	.	ID=Os07t0576500-01;Name=Os07t0576500-01;Locus_id=Os07g0576500;CGSNL Gene Symbol=GH3-9;CGSNL Gene Name=GH3-9;Oryzabase Gene Symbol Synonym(s)=OsGH3-9;Note=Similar to Auxin-responsive GH3-8 protein.;Transcript_evidence=AK106839 (DDBJ%2C Best hit);ORF_evidence=B1N696 (UniProt);InterPro=GH3 auxin-responsive promoter (IPR004993);NIAS_FLcDNA=002-116-H03;Oryzabase=11627;TENOR=Os07t0576500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	23327148	23327227	.	-	.	Parent=Os07t0576500-01
Chr07	irgsp1_rep	CDS	23326698	23327147	.	-	0	Parent=Os07t0576500-01
Chr07	irgsp1_rep	three_prime_UTR	23325199	23326697	.	-	.	Parent=Os07t0576500-01
Chr07	irgsp1_rep	mRNA	23325287	23330883	.	+	.	ID=Os07t0576550-00;Name=Os07t0576550-00;Locus_id=Os07g0576550;Note=Hypothetical protein.;Transcript_evidence=tplb0045h20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0576550-00
Chr07	irgsp1_rep	five_prime_UTR	23325287	23326642	.	+	.	Parent=Os07t0576550-00
Chr07	irgsp1_rep	CDS	23326643	23326675	.	+	0	Parent=Os07t0576550-00
Chr07	irgsp1_rep	CDS	23326753	23327069	.	+	0	Parent=Os07t0576550-00
Chr07	irgsp1_rep	CDS	23330808	23330883	.	+	1	Parent=Os07t0576550-00
Chr07	irgsp1_rep	mRNA	23328122	23329043	.	+	.	ID=Os07t0576600-00;Name=Os07t0576600-00;Locus_id=Os07g0576600;Note=Conserved hypothetical protein.;Transcript_evidence=BT064053 (DDBJ);ORF_evidence=B9FLH2 (UniProt);TENOR=Os07t0576600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	23328122	23328210	.	+	.	Parent=Os07t0576600-00
Chr07	irgsp1_rep	CDS	23328211	23328429	.	+	0	Parent=Os07t0576600-00
Chr07	irgsp1_rep	three_prime_UTR	23328430	23329043	.	+	.	Parent=Os07t0576600-00
Chr07	irgsp1_rep	mRNA	23344170	23348587	.	+	.	ID=Os07t0577300-01;Name=Os07t0577300-01;Locus_id=Os07g0577300;Note=Glycoside hydrolase%2C family 17 protein.;Transcript_evidence=AK242837 (DDBJ%2C Best hit);ORF_evidence=NP_001149308.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J090069K03;TENOR=Os07t0577300-01;KEGG=Os07t0577300-01
Chr07	irgsp1_rep	five_prime_UTR	23344170	23344630	.	+	.	Parent=Os07t0577300-01
Chr07	irgsp1_rep	five_prime_UTR	23345589	23345646	.	+	.	Parent=Os07t0577300-01
Chr07	irgsp1_rep	CDS	23345647	23345728	.	+	0	Parent=Os07t0577300-01
Chr07	irgsp1_rep	CDS	23345986	23347242	.	+	2	Parent=Os07t0577300-01
Chr07	irgsp1_rep	CDS	23348145	23348172	.	+	2	Parent=Os07t0577300-01
Chr07	irgsp1_rep	CDS	23348261	23348390	.	+	1	Parent=Os07t0577300-01
Chr07	irgsp1_rep	three_prime_UTR	23348391	23348587	.	+	.	Parent=Os07t0577300-01
Chr07	irgsp1_rep	mRNA	23345956	23348582	.	-	.	ID=Os07t0577350-00;Name=Os07t0577350-00;Locus_id=Os07g0577350;Note=Non-protein coding transcript.;Transcript_evidence=tplb0032h22 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os07t0577350-00
Chr07	irgsp1_rep	exon	23348231	23348582	.	-	.	Parent=Os07t0577350-00
Chr07	irgsp1_rep	exon	23345956	23347233	.	-	.	Parent=Os07t0577350-00
Chr07	irgsp1_rep	mRNA	23349441	23352488	.	+	.	ID=Os07t0577400-01;Name=Os07t0577400-01;Locus_id=Os07g0577400;Note=Similar to Constitutive photomorphogenesis protein 10.;Transcript_evidence=AK111080 (DDBJ%2C Best hit);ORF_evidence=NP_001147334.1 (RefSeq);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135);NIAS_FLcDNA=002-175-F03;Expression=AK111080;TENOR=Os07t0577400-01;KEGG=Os07t0577400-01 (EC:6.3.2.19)
Chr07	irgsp1_rep	five_prime_UTR	23349441	23349554	.	+	.	Parent=Os07t0577400-01
Chr07	irgsp1_rep	CDS	23349555	23349843	.	+	0	Parent=Os07t0577400-01
Chr07	irgsp1_rep	CDS	23350054	23350127	.	+	2	Parent=Os07t0577400-01
Chr07	irgsp1_rep	CDS	23351901	23352048	.	+	0	Parent=Os07t0577400-01
Chr07	irgsp1_rep	CDS	23352204	23352301	.	+	2	Parent=Os07t0577400-01
Chr07	irgsp1_rep	three_prime_UTR	23352302	23352488	.	+	.	Parent=Os07t0577400-01
Chr07	irgsp1_rep	mRNA	23353071	23354778	.	+	.	ID=Os07t0577500-01;Name=Os07t0577500-01;Locus_id=Os07g0577500;Note=Conserved hypothetical protein.;Transcript_evidence=AK100831 (DDBJ%2C Best hit);ORF_evidence=NP_001060089.1 (RefSeq);NIAS_FLcDNA=J023123D09;TENOR=Os07t0577500-01;KEGG=Os07t0577500-01
Chr07	irgsp1_rep	five_prime_UTR	23353071	23353147	.	+	.	Parent=Os07t0577500-01
Chr07	irgsp1_rep	CDS	23353148	23354209	.	+	0	Parent=Os07t0577500-01
Chr07	irgsp1_rep	three_prime_UTR	23354210	23354778	.	+	.	Parent=Os07t0577500-01
Chr07	irgsp1_rep	mRNA	23357777	23359366	.	+	.	ID=Os07t0577600-01;Name=Os07t0577600-01;Locus_id=Os07g0577600;Oryzabase Gene Symbol Synonym(s)=lhcA;Oryzabase Gene Name Synonym(s)=PSI type II chlorophyll a/b-binding protein;Note=Similar to Type II chlorophyll a/b binding protein from photosystem I precursor.;Transcript_evidence=AK119176 (DDBJ%2C Best hit),AK060987 (DDBJ%2C Best hit),AK103966 (DDBJ%2C Best hit),AK104016 (DDBJ%2C Best hit),AK104127 (DDBJ%2C Best hit),AK104177 (DDBJ%2C Best hit),AK104283 (DDBJ%2C Best hit),AK104608 (DDBJ%2C Best hit),AK104651 (DDBJ%2C Best hit);ORF_evidence=B6TKL9 (UniProt);GO=Biological Process: photosynthesis%2C light harvesting (GO:0009765),Cellular Component: membrane (GO:0016020);InterPro=Chlorophyll A-B binding protein%2C plant (IPR001344),Chlorophyll A-B binding protein (IPR022796),Chlorophyll a/b binding protein domain (IPR023329);NIAS_FLcDNA=001-037-F08,006-203-C01,001-015-H03,001-007-G05,006-203-E10,006-301-D02,001-006-H09,006-309-C01,006-311-B06;Oryzabase=9605;TENOR=Os07t0577600-01
Chr07	irgsp1_rep	five_prime_UTR	23357777	23357823	.	+	.	Parent=Os07t0577600-01
Chr07	irgsp1_rep	CDS	23357824	23358044	.	+	0	Parent=Os07t0577600-01
Chr07	irgsp1_rep	CDS	23358139	23358176	.	+	1	Parent=Os07t0577600-01
Chr07	irgsp1_rep	CDS	23358270	23358573	.	+	2	Parent=Os07t0577600-01
Chr07	irgsp1_rep	CDS	23358683	23358893	.	+	1	Parent=Os07t0577600-01
Chr07	irgsp1_rep	CDS	23359108	23359125	.	+	0	Parent=Os07t0577600-01
Chr07	irgsp1_rep	three_prime_UTR	23359126	23359366	.	+	.	Parent=Os07t0577600-01
Chr07	irgsp1_rep	mRNA	23357798	23359442	.	+	.	ID=Os07t0577600-02;Name=Os07t0577600-02;Locus_id=Os07g0577600;Oryzabase Gene Symbol Synonym(s)=lhcA;Oryzabase Gene Name Synonym(s)=PSI type II chlorophyll a/b-binding protein;Note=Similar to Chlorophyll a-b binding protein.;Transcript_evidence=AK070051 (DDBJ%2C Best hit);ORF_evidence=O22383 (UniProt);GO=Biological Process: photosynthesis%2C light harvesting (GO:0009765),Cellular Component: membrane (GO:0016020);InterPro=Chlorophyll A-B binding protein%2C plant (IPR001344);NIAS_FLcDNA=J023040A06;Oryzabase=9605;Expression=AK070051;TENOR=Os07t0577600-02;KEGG=Os07t0577600-02
Chr07	irgsp1_rep	five_prime_UTR	23357798	23357823	.	+	.	Parent=Os07t0577600-02
Chr07	irgsp1_rep	CDS	23357824	23358180	.	+	0	Parent=Os07t0577600-02
Chr07	irgsp1_rep	three_prime_UTR	23358181	23359442	.	+	.	Parent=Os07t0577600-02
Chr07	irgsp1_rep	mRNA	23361218	23365802	.	+	.	ID=Os07t0577700-01;Name=Os07t0577700-01;Locus_id=Os07g0577700;Oryzabase Gene Name Synonym(s)=Succinate:CoA ligase (GDP-forming) alpha chain;Note=Succinyl-CoA synthetase-like domain containing protein.;Transcript_evidence=AK243282 (DDBJ%2C Best hit);ORF_evidence=NP_001149702.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP citrate synthase activity (GO:0003878),Molecular Function: succinate-CoA ligase (ADP-forming) activity (GO:0004775),Molecular Function: binding (GO:0005488);InterPro=CoA-binding (IPR003781),Succinyl-CoA ligase%2C alpha subunit (IPR005810),ATP-citrate lyase/succinyl-CoA ligase (IPR005811),NAD(P)-binding domain (IPR016040),Succinyl-CoA synthetase-like (IPR016102),ATP-citrate lyase/succinyl-CoA ligase%2C active site (IPR017440);NIAS_FLcDNA=J100051I07;Oryzabase=17711;TENOR=Os07t0577700-01;KEGG=Os07t0577700-01 (EC:6.2.1.4%2C EC:6.2.1.5)
Chr07	irgsp1_rep	five_prime_UTR	23361218	23361278	.	+	.	Parent=Os07t0577700-01
Chr07	irgsp1_rep	CDS	23361279	23361485	.	+	0	Parent=Os07t0577700-01
Chr07	irgsp1_rep	CDS	23362853	23363062	.	+	0	Parent=Os07t0577700-01
Chr07	irgsp1_rep	CDS	23363494	23363664	.	+	0	Parent=Os07t0577700-01
Chr07	irgsp1_rep	CDS	23363742	23363865	.	+	0	Parent=Os07t0577700-01
Chr07	irgsp1_rep	CDS	23364332	23364393	.	+	2	Parent=Os07t0577700-01
Chr07	irgsp1_rep	CDS	23364764	23364845	.	+	0	Parent=Os07t0577700-01
Chr07	irgsp1_rep	CDS	23365449	23365588	.	+	2	Parent=Os07t0577700-01
Chr07	irgsp1_rep	three_prime_UTR	23365589	23365802	.	+	.	Parent=Os07t0577700-01
Chr07	irgsp1_rep	mRNA	23369647	23370145	.	+	.	ID=Os07t0577801-00;Name=Os07t0577801-00;Locus_id=Os07g0577801;Note=Conserved hypothetical protein.;Transcript_evidence=EU976684 (DDBJ);ORF_evidence=B9ETH5 (UniProt);TENOR=Os07t0577801-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	23369647	23369704	.	+	.	Parent=Os07t0577801-00
Chr07	irgsp1_rep	CDS	23369705	23370145	.	+	0	Parent=Os07t0577801-00
Chr07	irgsp1_rep	mRNA	23371551	23373885	.	-	.	ID=Os07t0577900-01;Name=Os07t0577900-01;Locus_id=Os07g0577900;Note=Target SNARE coiled-coil region domain containing protein.;Transcript_evidence=AK062833 (DDBJ%2C Best hit);ORF_evidence=B8B7R9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Target SNARE coiled-coil domain (IPR000727);NIAS_FLcDNA=001-107-G09;Expression=AK062833;TENOR=Os07t0577900-01;KEGG=Os07t0577900-01
Chr07	irgsp1_rep	five_prime_UTR	23373733	23373885	.	-	.	Parent=Os07t0577900-01
Chr07	irgsp1_rep	CDS	23373692	23373732	.	-	0	Parent=Os07t0577900-01
Chr07	irgsp1_rep	CDS	23373438	23373543	.	-	1	Parent=Os07t0577900-01
Chr07	irgsp1_rep	CDS	23372380	23372436	.	-	0	Parent=Os07t0577900-01
Chr07	irgsp1_rep	CDS	23371766	23371927	.	-	0	Parent=Os07t0577900-01
Chr07	irgsp1_rep	three_prime_UTR	23371551	23371765	.	-	.	Parent=Os07t0577900-01
Chr07	irgsp1_rep	mRNA	23376456	23378642	.	-	.	ID=Os07t0578050-00;Name=Os07t0578050-00;Locus_id=Os07g0578050;Note=Hypothetical gene.;Transcript_evidence=AK241529 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065171I21;TENOR=Os07t0578050-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	23378642	23378642	.	-	.	Parent=Os07t0578050-00
Chr07	irgsp1_rep	CDS	23378426	23378641	.	-	0	Parent=Os07t0578050-00
Chr07	irgsp1_rep	three_prime_UTR	23377813	23378425	.	-	.	Parent=Os07t0578050-00
Chr07	irgsp1_rep	three_prime_UTR	23376456	23376683	.	-	.	Parent=Os07t0578050-00
Chr07	irgsp1_rep	mRNA	23379977	23381044	.	+	.	ID=Os07t0578125-00;Name=Os07t0578125-00;Locus_id=Os07g0578125;Oryzabase Gene Symbol Synonym(s)=Os_F0741;Note=Protein of unknown function DUF295 domain containing protein.;Transcript_evidence=AK359095 (DDBJ);ORF_evidence=Q6ZL91 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174);Oryzabase=17503;TENOR=Os07t0578125-00
Chr07	irgsp1_rep	CDS	23379977	23381044	.	+	0	Parent=Os07t0578125-00
Chr07	irgsp1_rep	mRNA	23389398	23396906	.	+	.	ID=Os07t0578200-01;Name=Os07t0578200-01;Locus_id=Os07g0578200;Note=Major facilitator superfamily%2C general substrate transporter domain containing protein.;Transcript_evidence=AK070952 (DDBJ%2C Best hit);ORF_evidence=B8B7S1 (UniProt);InterPro=Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J023073D03;Expression=AK070952;TENOR=Os07t0578200-01;KEGG=Os07t0578200-01
Chr07	irgsp1_rep	five_prime_UTR	23389398	23389602	.	+	.	Parent=Os07t0578200-01
Chr07	irgsp1_rep	five_prime_UTR	23391080	23391109	.	+	.	Parent=Os07t0578200-01
Chr07	irgsp1_rep	CDS	23391110	23391276	.	+	0	Parent=Os07t0578200-01
Chr07	irgsp1_rep	CDS	23391894	23391963	.	+	1	Parent=Os07t0578200-01
Chr07	irgsp1_rep	CDS	23392134	23392330	.	+	0	Parent=Os07t0578200-01
Chr07	irgsp1_rep	CDS	23392422	23392497	.	+	1	Parent=Os07t0578200-01
Chr07	irgsp1_rep	CDS	23392585	23392659	.	+	0	Parent=Os07t0578200-01
Chr07	irgsp1_rep	CDS	23392740	23392819	.	+	0	Parent=Os07t0578200-01
Chr07	irgsp1_rep	CDS	23392936	23393062	.	+	1	Parent=Os07t0578200-01
Chr07	irgsp1_rep	CDS	23394187	23394246	.	+	0	Parent=Os07t0578200-01
Chr07	irgsp1_rep	CDS	23395505	23395555	.	+	0	Parent=Os07t0578200-01
Chr07	irgsp1_rep	CDS	23395627	23395785	.	+	0	Parent=Os07t0578200-01
Chr07	irgsp1_rep	CDS	23396107	23396239	.	+	0	Parent=Os07t0578200-01
Chr07	irgsp1_rep	CDS	23396336	23396505	.	+	2	Parent=Os07t0578200-01
Chr07	irgsp1_rep	three_prime_UTR	23396506	23396906	.	+	.	Parent=Os07t0578200-01
Chr07	irgsp1_rep	mRNA	23398209	23400653	.	+	.	ID=Os07t0578300-01;Name=Os07t0578300-01;Locus_id=Os07g0578300;Oryzabase Gene Symbol Synonym(s)=OsSub53%2C SUB53;Oryzabase Gene Name Synonym(s)=Subtilisin 53%2C SUBTILISIN 53;Note=Peptidase S8%2C subtilisin-related domain containing protein.;Transcript_evidence=AK107610 (DDBJ%2C Best hit);ORF_evidence=A2YMZ7 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C His-active site (IPR022398),Peptidase S8%2C subtilisin%2C  Asp-active site (IPR023827),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);NIAS_FLcDNA=002-131-C05;Oryzabase=20137;Expression=AK107610;TENOR=Os07t0578300-01;KEGG=Os07t0578300-01
Chr07	irgsp1_rep	five_prime_UTR	23398209	23398235	.	+	.	Parent=Os07t0578300-01
Chr07	irgsp1_rep	CDS	23398236	23400548	.	+	0	Parent=Os07t0578300-01
Chr07	irgsp1_rep	three_prime_UTR	23400549	23400653	.	+	.	Parent=Os07t0578300-01
Chr07	irgsp1_rep	mRNA	23400939	23401971	.	-	.	ID=Os07t0578333-01;Name=Os07t0578333-01;Locus_id=Os07g0578333;Note=Conserved hypothetical protein.;Transcript_evidence=AK242064 (DDBJ%2C Best hit);ORF_evidence=NP_001175271.1 (RefSeq);NIAS_FLcDNA=J075127O08;TENOR=Os07t0578333-01;KEGG=Os07t0578333-01
Chr07	irgsp1_rep	five_prime_UTR	23401504	23401971	.	-	.	Parent=Os07t0578333-01
Chr07	irgsp1_rep	CDS	23401473	23401503	.	-	0	Parent=Os07t0578333-01
Chr07	irgsp1_rep	CDS	23401005	23401198	.	-	2	Parent=Os07t0578333-01
Chr07	irgsp1_rep	three_prime_UTR	23400939	23401004	.	-	.	Parent=Os07t0578333-01
Chr07	irgsp1_rep	mRNA	23419018	23422450	.	+	.	ID=Os07t0578600-01;Name=Os07t0578600-01;Locus_id=Os07g0578600;Note=Similar to 5-formyltetrahydrofolate cycloligase (EC 6.3.3.2).;Transcript_evidence=AK067155 (DDBJ%2C Best hit);ORF_evidence=XP_002318620.1 (RefSeq);GO=Biological Process: folic acid-containing compound biosynthetic process (GO:0009396),Molecular Function: ATP binding (GO:0005524),Molecular Function: 5-formyltetrahydrofolate cyclo-ligase activity (GO:0030272);InterPro=5-formyltetrahydrofolate cyclo-ligase (IPR002698),5-formyltetrahydrofolate cyclo-ligase-like domain (IPR024185);NIAS_FLcDNA=J013097O11;Expression=AK067155;TENOR=Os07t0578600-01;KEGG=Os07t0578600-01 (EC:6.3.3.2)
Chr07	irgsp1_rep	five_prime_UTR	23419018	23419018	.	+	.	Parent=Os07t0578600-01
Chr07	irgsp1_rep	CDS	23419019	23419277	.	+	0	Parent=Os07t0578600-01
Chr07	irgsp1_rep	CDS	23419867	23420004	.	+	2	Parent=Os07t0578600-01
Chr07	irgsp1_rep	CDS	23420070	23420228	.	+	2	Parent=Os07t0578600-01
Chr07	irgsp1_rep	CDS	23420347	23420388	.	+	2	Parent=Os07t0578600-01
Chr07	irgsp1_rep	CDS	23420464	23420509	.	+	2	Parent=Os07t0578600-01
Chr07	irgsp1_rep	CDS	23421393	23421463	.	+	1	Parent=Os07t0578600-01
Chr07	irgsp1_rep	CDS	23422090	23422223	.	+	2	Parent=Os07t0578600-01
Chr07	irgsp1_rep	three_prime_UTR	23422224	23422450	.	+	.	Parent=Os07t0578600-01
Chr07	irgsp1_rep	mRNA	23419018	23422411	.	+	.	ID=Os07t0578600-02;Name=Os07t0578600-02;Locus_id=Os07g0578600;Note=Similar to 5-formyltetrahydrofolate cyclo-ligase.;Transcript_evidence=AK060488 (DDBJ%2C Best hit);ORF_evidence=XP_002318620.1 (RefSeq);GO=Biological Process: folic acid-containing compound biosynthetic process (GO:0009396),Molecular Function: ATP binding (GO:0005524),Molecular Function: 5-formyltetrahydrofolate cyclo-ligase activity (GO:0030272);InterPro=5-formyltetrahydrofolate cyclo-ligase (IPR002698),5-formyltetrahydrofolate cyclo-ligase-like domain (IPR024185);NIAS_FLcDNA=001-014-C07;Expression=AK060488;TENOR=Os07t0578600-02;KEGG=Os07t0578600-02 (EC:6.3.3.2)
Chr07	irgsp1_rep	five_prime_UTR	23419018	23419018	.	+	.	Parent=Os07t0578600-02
Chr07	irgsp1_rep	CDS	23419019	23419277	.	+	0	Parent=Os07t0578600-02
Chr07	irgsp1_rep	CDS	23419867	23420004	.	+	2	Parent=Os07t0578600-02
Chr07	irgsp1_rep	CDS	23420070	23420245	.	+	2	Parent=Os07t0578600-02
Chr07	irgsp1_rep	three_prime_UTR	23420347	23420388	.	+	.	Parent=Os07t0578600-02
Chr07	irgsp1_rep	three_prime_UTR	23420464	23420509	.	+	.	Parent=Os07t0578600-02
Chr07	irgsp1_rep	three_prime_UTR	23421393	23421463	.	+	.	Parent=Os07t0578600-02
Chr07	irgsp1_rep	three_prime_UTR	23422090	23422411	.	+	.	Parent=Os07t0578600-02
Chr07	irgsp1_rep	mRNA	23419051	23422448	.	+	.	ID=Os07t0578600-03;Name=Os07t0578600-03;Locus_id=Os07g0578600;Note=Similar to 5-formyltetrahydrofolate cyclo-ligase.;Transcript_evidence=AK106065 (DDBJ%2C Best hit);ORF_evidence=XP_002318620.1 (RefSeq);GO=Biological Process: folic acid-containing compound biosynthetic process (GO:0009396),Molecular Function: ATP binding (GO:0005524),Molecular Function: 5-formyltetrahydrofolate cyclo-ligase activity (GO:0030272);InterPro=5-formyltetrahydrofolate cyclo-ligase (IPR002698),5-formyltetrahydrofolate cyclo-ligase-like domain (IPR024185);NIAS_FLcDNA=001-206-G09;TENOR=Os07t0578600-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	23419051	23419168	.	+	.	Parent=Os07t0578600-03
Chr07	irgsp1_rep	CDS	23419169	23419277	.	+	0	Parent=Os07t0578600-03
Chr07	irgsp1_rep	CDS	23419867	23420004	.	+	2	Parent=Os07t0578600-03
Chr07	irgsp1_rep	CDS	23420070	23420228	.	+	2	Parent=Os07t0578600-03
Chr07	irgsp1_rep	CDS	23420347	23420388	.	+	2	Parent=Os07t0578600-03
Chr07	irgsp1_rep	CDS	23420464	23420509	.	+	2	Parent=Os07t0578600-03
Chr07	irgsp1_rep	CDS	23421393	23421463	.	+	1	Parent=Os07t0578600-03
Chr07	irgsp1_rep	CDS	23422090	23422223	.	+	2	Parent=Os07t0578600-03
Chr07	irgsp1_rep	three_prime_UTR	23422224	23422448	.	+	.	Parent=Os07t0578600-03
Chr07	irgsp1_rep	mRNA	23422877	23423905	.	-	.	ID=Os07t0578700-00;Name=Os07t0578700-00;Locus_id=Os07g0578700;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001175272.1 (RefSeq);TENOR=Os07t0578700-00;KEGG=Os07t0578700-00
Chr07	irgsp1_rep	CDS	23422877	23423905	.	-	0	Parent=Os07t0578700-00
Chr07	irgsp1_rep	mRNA	23425405	23427883	.	-	.	ID=Os07t0578800-00;Name=Os07t0578800-00;Locus_id=Os07g0578800;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001060096.2 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os07t0578800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	23426009	23427883	.	-	0	Parent=Os07t0578800-00
Chr07	irgsp1_rep	CDS	23425689	23425750	.	-	0	Parent=Os07t0578800-00
Chr07	irgsp1_rep	CDS	23425405	23425585	.	-	1	Parent=Os07t0578800-00
Chr07	irgsp1_rep	mRNA	23433375	23434851	.	+	.	ID=Os07t0579000-01;Name=Os07t0579000-01;Locus_id=Os07g0579000;Note=Conserved hypothetical protein.;Transcript_evidence=AK107683 (DDBJ%2C Best hit);ORF_evidence=B9FY35 (UniProt);NIAS_FLcDNA=002-132-A11;TENOR=Os07t0579000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	23433375	23433468	.	+	.	Parent=Os07t0579000-01
Chr07	irgsp1_rep	CDS	23433469	23433867	.	+	0	Parent=Os07t0579000-01
Chr07	irgsp1_rep	three_prime_UTR	23433868	23434851	.	+	.	Parent=Os07t0579000-01
Chr07	irgsp1_rep	mRNA	23436019	23436842	.	-	.	ID=Os07t0579050-01;Name=Os07t0579050-01;Locus_id=Os07g0579050;Note=Non-protein coding transcript.;Transcript_evidence=AK242495 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080307M01;TENOR=Os07t0579050-01
Chr07	irgsp1_rep	exon	23436758	23436842	.	-	.	Parent=Os07t0579050-01
Chr07	irgsp1_rep	exon	23436019	23436482	.	-	.	Parent=Os07t0579050-01
Chr07	irgsp1_rep	mRNA	23440709	23441712	.	-	.	ID=Os07t0579100-01;Name=Os07t0579100-01;Locus_id=Os07g0579100;Note=Conserved hypothetical protein.;Transcript_evidence=AK066662 (DDBJ%2C Best hit);ORF_evidence=A2YN04 (UniProt);NIAS_FLcDNA=J013071A17;Expression=AK066662;TENOR=Os07t0579100-01;KEGG=Os07t0579100-01
Chr07	irgsp1_rep	five_prime_UTR	23441546	23441712	.	-	.	Parent=Os07t0579100-01
Chr07	irgsp1_rep	CDS	23441371	23441545	.	-	0	Parent=Os07t0579100-01
Chr07	irgsp1_rep	CDS	23441204	23441284	.	-	2	Parent=Os07t0579100-01
Chr07	irgsp1_rep	CDS	23441095	23441111	.	-	2	Parent=Os07t0579100-01
Chr07	irgsp1_rep	three_prime_UTR	23440709	23441094	.	-	.	Parent=Os07t0579100-01
Chr07	irgsp1_rep	mRNA	23477296	23478315	.	-	.	ID=Os07t0580200-01;Name=Os07t0580200-01;Locus_id=Os07g0580200;Note=Conserved hypothetical protein.;Transcript_evidence=AK108520 (DDBJ%2C Best hit);ORF_evidence=Q7XI99 (UniProt);NIAS_FLcDNA=002-144-B03;Expression=AK108520;TENOR=Os07t0580200-01;KEGG=Os07t0580200-01
Chr07	irgsp1_rep	five_prime_UTR	23478144	23478315	.	-	.	Parent=Os07t0580200-01
Chr07	irgsp1_rep	CDS	23477969	23478143	.	-	0	Parent=Os07t0580200-01
Chr07	irgsp1_rep	CDS	23477576	23477844	.	-	2	Parent=Os07t0580200-01
Chr07	irgsp1_rep	three_prime_UTR	23477296	23477575	.	-	.	Parent=Os07t0580200-01
Chr07	irgsp1_rep	mRNA	23479734	23480747	.	-	.	ID=Os07t0580300-00;Name=Os07t0580300-00;Locus_id=Os07g0580300;Note=Hypothetical conserved gene.;Transcript_evidence=CT837805 (DDBJ%2C Best hit);ORF_evidence=Q7XI99 (UniProt);TENOR=Os07t0580300-00;KEGG=Os07t0580300-00
Chr07	irgsp1_rep	five_prime_UTR	23480625	23480747	.	-	.	Parent=Os07t0580300-00
Chr07	irgsp1_rep	CDS	23480459	23480624	.	-	0	Parent=Os07t0580300-00
Chr07	irgsp1_rep	CDS	23480253	23480336	.	-	2	Parent=Os07t0580300-00
Chr07	irgsp1_rep	CDS	23479897	23480141	.	-	2	Parent=Os07t0580300-00
Chr07	irgsp1_rep	three_prime_UTR	23479805	23479896	.	-	.	Parent=Os07t0580300-00
Chr07	irgsp1_rep	three_prime_UTR	23479734	23479783	.	-	.	Parent=Os07t0580300-00
Chr07	irgsp1_rep	mRNA	23483973	23485307	.	-	.	ID=Os07t0580500-01;Name=Os07t0580500-01;Locus_id=Os07g0580500;RAP-DB Gene Symbol Synonym(s)=BZR1%2C OsBZR1%2C Os BZR1;RAP-DB Gene Name Synonym(s)=BRASSINAZOLE RESISTANT 1%2C BRASSINAZOLE-RESISTANT1;CGSNL Gene Symbol=BZR1;CGSNL Gene Name=BRASSINAZOLE RESISTANT 1;Oryzabase Gene Symbol Synonym(s)=OsBZR1%2C Os BZR1;Oryzabase Gene Name Synonym(s)=BRASSINAZOLE-RESISTANT1;Note=Transcription factor%2C Brassinosteroid (BR)-regulated growth response%2C Feedback inhibition of BR biosynthesis;Transcript_evidence=AK106748;ORF_evidence=Q7XI96;InterPro=BES1/BZR1 plant transcription factor%2C N-terminal (IPR008540);NIAS_FLcDNA=002-115-C06;Manual Curation=February 23%2C 2016;Literature_PMID=17699623;Oryzabase=7160;TENOR=Os07t0580500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	23485248	23485307	.	-	.	Parent=Os07t0580500-01
Chr07	irgsp1_rep	CDS	23485020	23485247	.	-	0	Parent=Os07t0580500-01
Chr07	irgsp1_rep	CDS	23484222	23484890	.	-	0	Parent=Os07t0580500-01
Chr07	irgsp1_rep	three_prime_UTR	23483973	23484221	.	-	.	Parent=Os07t0580500-01
Chr07	irgsp1_rep	mRNA	23491677	23495033	.	-	.	ID=Os07t0580700-01;Name=Os07t0580700-01;Locus_id=Os07g0580700;Note=Integrin alpha chain%2C C-terminal cytoplasmic region%2C conserved site domain containing protein.;Transcript_evidence=AK119427 (DDBJ%2C Best hit);ORF_evidence=Q7XI95 (UniProt);InterPro=Protein of unknown function DUF2921 (IPR021319);NIAS_FLcDNA=001-132-H09;Expression=AK119427;TENOR=Os07t0580700-01;KEGG=Os07t0580700-01
Chr07	irgsp1_rep	five_prime_UTR	23494877	23495033	.	-	.	Parent=Os07t0580700-01
Chr07	irgsp1_rep	CDS	23491784	23494876	.	-	0	Parent=Os07t0580700-01
Chr07	irgsp1_rep	three_prime_UTR	23491677	23491783	.	-	.	Parent=Os07t0580700-01
Chr07	irgsp1_rep	mRNA	23497079	23497504	.	-	.	ID=Os07t0580733-00;Name=Os07t0580733-00;Locus_id=Os07g0580733;Note=Protein of unknown function DUF2921 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XI95 (UniProt);InterPro=Protein of unknown function DUF2921 (IPR021319);TENOR=Os07t0580733-00
Chr07	irgsp1_rep	CDS	23497079	23497504	.	-	0	Parent=Os07t0580733-00
Chr07	irgsp1_rep	mRNA	23497780	23500287	.	-	.	ID=Os07t0580766-00;Name=Os07t0580766-00;Locus_id=Os07g0580766;Note=Protein of unknown function DUF2921 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8B7S6 (UniProt);InterPro=Protein of unknown function DUF2921 (IPR021319);TENOR=Os07t0580766-00
Chr07	irgsp1_rep	CDS	23497780	23500287	.	-	0	Parent=Os07t0580766-00
Chr07	irgsp1_rep	mRNA	23502927	23504391	.	-	.	ID=Os07t0580800-01;Name=Os07t0580800-01;Locus_id=Os07g0580800;Note=Hypothetical protein.;Transcript_evidence=AK243347 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100060B01;TENOR=Os07t0580800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	23503784	23504391	.	-	.	Parent=Os07t0580800-01
Chr07	irgsp1_rep	CDS	23503343	23503783	.	-	0	Parent=Os07t0580800-01
Chr07	irgsp1_rep	three_prime_UTR	23502927	23503342	.	-	.	Parent=Os07t0580800-01
Chr07	irgsp1_rep	mRNA	23507442	23509287	.	-	.	ID=Os07t0580900-01;Name=Os07t0580900-01;Locus_id=Os07g0580900;CGSNL Gene Symbol=GGPPS1;CGSNL Gene Name=GERANYLGERANYL DIPHOSPHATE SYNTHASE 1;Oryzabase Gene Symbol Synonym(s)=OsGGPPS1;Oryzabase Gene Name Synonym(s)=geranylgeranyl diphosphate synthase 1%2C GGPP synthase 1;Note=Similar to GGDP synthase.;Transcript_evidence=AK120768 (DDBJ%2C Best hit);ORF_evidence=A9ZN20 (UniProt);GO=Biological Process: isoprenoid biosynthetic process (GO:0008299);InterPro=Polyprenyl synthetase (IPR000092),Terpenoid synthase (IPR008949),Polyprenyl synthetase-related (IPR017446);NIAS_FLcDNA=J023007O22;Oryzabase=11201;Expression=AK120768;TENOR=Os07t0580900-01;KEGG=Os07t0580900-01 (EC:2.5.1.1%2C EC:2.5.1.10)
Chr07	irgsp1_rep	five_prime_UTR	23509116	23509287	.	-	.	Parent=Os07t0580900-01
Chr07	irgsp1_rep	CDS	23508438	23509115	.	-	0	Parent=Os07t0580900-01
Chr07	irgsp1_rep	CDS	23507709	23508131	.	-	0	Parent=Os07t0580900-01
Chr07	irgsp1_rep	three_prime_UTR	23507442	23507708	.	-	.	Parent=Os07t0580900-01
Chr07	irgsp1_rep	mRNA	23506852	23509286	.	-	.	ID=Os07t0580900-02;Name=Os07t0580900-02;Locus_id=Os07g0580900;CGSNL Gene Symbol=GGPPS1;CGSNL Gene Name=GERANYLGERANYL DIPHOSPHATE SYNTHASE 1;Oryzabase Gene Symbol Synonym(s)=OsGGPPS1;Oryzabase Gene Name Synonym(s)=geranylgeranyl diphosphate synthase 1%2C GGPP synthase 1;Note=Similar to GGDP synthase.;Transcript_evidence=AK121529 (DDBJ%2C Best hit);ORF_evidence=A9ZN20 (UniProt);GO=Biological Process: isoprenoid biosynthetic process (GO:0008299);InterPro=Polyprenyl synthetase (IPR000092),Terpenoid synthase (IPR008949),Polyprenyl synthetase-related (IPR017446);NIAS_FLcDNA=J033030K23;Oryzabase=11201;Expression=AK121529;TENOR=Os07t0580900-02;KEGG=Os07t0580900-02 (EC:2.5.1.1%2C EC:2.5.1.10)
Chr07	irgsp1_rep	five_prime_UTR	23509116	23509286	.	-	.	Parent=Os07t0580900-02
Chr07	irgsp1_rep	CDS	23508438	23509115	.	-	0	Parent=Os07t0580900-02
Chr07	irgsp1_rep	CDS	23507709	23508131	.	-	0	Parent=Os07t0580900-02
Chr07	irgsp1_rep	three_prime_UTR	23507708	23507708	.	-	.	Parent=Os07t0580900-02
Chr07	irgsp1_rep	three_prime_UTR	23506852	23507352	.	-	.	Parent=Os07t0580900-02
Chr07	irgsp1_rep	mRNA	23511926	23515566	.	-	.	ID=Os07t0581000-01;Name=Os07t0581000-01;Locus_id=Os07g0581000;Note=Protein of unknown function DUF250 domain containing protein.;Transcript_evidence=AK102987 (DDBJ%2C Best hit);ORF_evidence=B6TCN0 (UniProt);InterPro=Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=J033116C12;Expression=AK102987;TENOR=Os07t0581000-01;KEGG=Os07t0581000-01
Chr07	irgsp1_rep	five_prime_UTR	23515172	23515566	.	-	.	Parent=Os07t0581000-01
Chr07	irgsp1_rep	CDS	23515042	23515171	.	-	0	Parent=Os07t0581000-01
Chr07	irgsp1_rep	CDS	23514709	23514893	.	-	2	Parent=Os07t0581000-01
Chr07	irgsp1_rep	CDS	23514407	23514607	.	-	0	Parent=Os07t0581000-01
Chr07	irgsp1_rep	CDS	23513031	23513192	.	-	0	Parent=Os07t0581000-01
Chr07	irgsp1_rep	CDS	23512203	23512562	.	-	0	Parent=Os07t0581000-01
Chr07	irgsp1_rep	three_prime_UTR	23511926	23512202	.	-	.	Parent=Os07t0581000-01
Chr07	irgsp1_rep	mRNA	23511911	23515317	.	-	.	ID=Os07t0581000-02;Name=Os07t0581000-02;Locus_id=Os07g0581000;Note=Protein of unknown function DUF250 domain containing protein.;Transcript_evidence=AK064035 (DDBJ%2C Best hit);ORF_evidence=B6TCN0 (UniProt);InterPro=Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=001-125-C07;TENOR=Os07t0581000-02
Chr07	irgsp1_rep	five_prime_UTR	23515172	23515317	.	-	.	Parent=Os07t0581000-02
Chr07	irgsp1_rep	CDS	23515042	23515171	.	-	0	Parent=Os07t0581000-02
Chr07	irgsp1_rep	CDS	23514709	23514893	.	-	2	Parent=Os07t0581000-02
Chr07	irgsp1_rep	CDS	23514407	23514607	.	-	0	Parent=Os07t0581000-02
Chr07	irgsp1_rep	CDS	23513031	23513192	.	-	0	Parent=Os07t0581000-02
Chr07	irgsp1_rep	CDS	23512203	23512562	.	-	0	Parent=Os07t0581000-02
Chr07	irgsp1_rep	three_prime_UTR	23511911	23512202	.	-	.	Parent=Os07t0581000-02
Chr07	irgsp1_rep	mRNA	23522446	23522964	.	+	.	ID=Os07t0581100-00;Name=Os07t0581100-00;Locus_id=Os07g0581100;Note=Similar to ruvB-like 2.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001148563.1 (RefSeq);GO=Molecular Function: DNA helicase activity (GO:0003678),Molecular Function: ATP binding (GO:0005524);InterPro=TIP49%2C C-terminal (IPR010339),Nucleic acid-binding%2C OB-fold-like (IPR016027);TENOR=Os07t0581100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	23522446	23522794	.	+	0	Parent=Os07t0581100-00
Chr07	irgsp1_rep	CDS	23522810	23522964	.	+	2	Parent=Os07t0581100-00
Chr07	irgsp1_rep	mRNA	23527285	23535459	.	+	.	ID=Os07t0581300-01;Name=Os07t0581300-01;Locus_id=Os07g0581300;Note=Conserved hypothetical protein.;Transcript_evidence=AK103439 (DDBJ%2C Best hit);ORF_evidence=B9FY40 (UniProt);NIAS_FLcDNA=J033129C21;Expression=AK103439;TENOR=Os07t0581300-01;KEGG=Os07t0581300-01
Chr07	irgsp1_rep	five_prime_UTR	23527285	23527417	.	+	.	Parent=Os07t0581300-01
Chr07	irgsp1_rep	CDS	23527418	23527451	.	+	0	Parent=Os07t0581300-01
Chr07	irgsp1_rep	CDS	23528314	23528528	.	+	2	Parent=Os07t0581300-01
Chr07	irgsp1_rep	CDS	23528758	23528894	.	+	0	Parent=Os07t0581300-01
Chr07	irgsp1_rep	CDS	23528985	23529095	.	+	1	Parent=Os07t0581300-01
Chr07	irgsp1_rep	CDS	23529185	23529286	.	+	1	Parent=Os07t0581300-01
Chr07	irgsp1_rep	CDS	23529959	23530067	.	+	1	Parent=Os07t0581300-01
Chr07	irgsp1_rep	CDS	23530147	23530347	.	+	0	Parent=Os07t0581300-01
Chr07	irgsp1_rep	CDS	23530565	23530733	.	+	0	Parent=Os07t0581300-01
Chr07	irgsp1_rep	CDS	23530815	23530896	.	+	2	Parent=Os07t0581300-01
Chr07	irgsp1_rep	CDS	23530974	23531067	.	+	1	Parent=Os07t0581300-01
Chr07	irgsp1_rep	CDS	23531745	23531841	.	+	0	Parent=Os07t0581300-01
Chr07	irgsp1_rep	CDS	23532184	23532277	.	+	2	Parent=Os07t0581300-01
Chr07	irgsp1_rep	CDS	23533037	23533109	.	+	1	Parent=Os07t0581300-01
Chr07	irgsp1_rep	CDS	23533777	23533950	.	+	0	Parent=Os07t0581300-01
Chr07	irgsp1_rep	CDS	23534105	23534227	.	+	0	Parent=Os07t0581300-01
Chr07	irgsp1_rep	CDS	23534975	23535136	.	+	0	Parent=Os07t0581300-01
Chr07	irgsp1_rep	three_prime_UTR	23535137	23535459	.	+	.	Parent=Os07t0581300-01
Chr07	irgsp1_rep	mRNA	23533790	23535268	.	+	.	ID=Os07t0581300-02;Name=Os07t0581300-02;Locus_id=Os07g0581300;Note=Similar to predicted protein.;Transcript_evidence=AK061656 (DDBJ%2C Best hit);ORF_evidence=XP_002460920.1 (RefSeq);NIAS_FLcDNA=001-036-D02;Expression=AK061656;TENOR=Os07t0581300-02;KEGG=Os07t0581300-02
Chr07	irgsp1_rep	five_prime_UTR	23533790	23533791	.	+	.	Parent=Os07t0581300-02
Chr07	irgsp1_rep	CDS	23533792	23533950	.	+	0	Parent=Os07t0581300-02
Chr07	irgsp1_rep	CDS	23534105	23534227	.	+	0	Parent=Os07t0581300-02
Chr07	irgsp1_rep	CDS	23534975	23535136	.	+	0	Parent=Os07t0581300-02
Chr07	irgsp1_rep	three_prime_UTR	23535137	23535268	.	+	.	Parent=Os07t0581300-02
Chr07	irgsp1_rep	mRNA	23541130	23543151	.	-	.	ID=Os07t0581333-00;Name=Os07t0581333-00;Locus_id=Os07g0581333;Note=Hypothetical protein.;Transcript_evidence=EU945312 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0581333-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	23542937	23543151	.	-	.	Parent=Os07t0581333-00
Chr07	irgsp1_rep	CDS	23542869	23542936	.	-	0	Parent=Os07t0581333-00
Chr07	irgsp1_rep	CDS	23542607	23542756	.	-	1	Parent=Os07t0581333-00
Chr07	irgsp1_rep	CDS	23541130	23541323	.	-	1	Parent=Os07t0581333-00
Chr07	irgsp1_rep	mRNA	23540795	23543383	.	+	.	ID=Os07t0581366-00;Name=Os07t0581366-00;Locus_id=Os07g0581366;CGSNL Gene Symbol=IDD5;CGSNL Gene Name=INDETERMINATE DOMAIN 5;Oryzabase Gene Symbol Synonym(s)=OsIDD5;Oryzabase Gene Name Synonym(s)=indeterminate domain 5;Note=Zinc finger%2C C2H2 domain containing protein.;Transcript_evidence=FP098399 (DDBJ);ORF_evidence=Q7XI88 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880);Oryzabase=13153;TENOR=Os07t0581366-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	23540795	23540867	.	+	.	Parent=Os07t0581366-00
Chr07	irgsp1_rep	CDS	23540868	23540988	.	+	0	Parent=Os07t0581366-00
Chr07	irgsp1_rep	CDS	23541134	23541536	.	+	2	Parent=Os07t0581366-00
Chr07	irgsp1_rep	CDS	23541636	23541976	.	+	1	Parent=Os07t0581366-00
Chr07	irgsp1_rep	CDS	23542200	23543239	.	+	2	Parent=Os07t0581366-00
Chr07	irgsp1_rep	three_prime_UTR	23543240	23543383	.	+	.	Parent=Os07t0581366-00
Chr07	irgsp1_rep	mRNA	23543442	23544075	.	+	.	ID=Os07t0581400-01;Name=Os07t0581400-01;Locus_id=Os07g0581400;Note=Hypothetical gene.;Transcript_evidence=AK063137 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-111-G04;TENOR=Os07t0581400-01
Chr07	irgsp1_rep	five_prime_UTR	23543442	23543812	.	+	.	Parent=Os07t0581400-01
Chr07	irgsp1_rep	CDS	23543813	23544075	.	+	0	Parent=Os07t0581400-01
Chr07	irgsp1_rep	mRNA	23547813	23548030	.	-	.	ID=Os07t0581550-00;Name=Os07t0581550-00;Locus_id=Os07g0581550;Note=Hypothetical protein.;Transcript_evidence=EU945738 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0581550-00
Chr07	irgsp1_rep	CDS	23547813	23548030	.	-	0	Parent=Os07t0581550-00
Chr07	irgsp1_rep	mRNA	23559527	23560862	.	+	.	ID=Os07t0581700-01;Name=Os07t0581700-01;Locus_id=Os07g0581700;RAP-DB Gene Symbol Synonym(s)=Oshox14;RAP-DB Gene Name Synonym(s)=homeobox gene 14;CGSNL Gene Symbol=HOX14;CGSNL Gene Name=HOMEOBOX GENE 14;Oryzabase Gene Symbol Synonym(s)=Oshox14%2C OsHox14;Oryzabase Gene Name Synonym(s)=rice homeobox gene 14%2C Homeobox-leucine zipper protein HOX14%2C Homeodomain transcription factor HOX14%2C HD-ZIP protein HOX14;Note=Homeodomain-leucine zipper (HD-Zip) transcription factor%2C Regulation of panicle development;Transcript_evidence=AK121889;ORF_evidence=Q7XI85;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox-like domain superfamily (IPR009057),Homeobox domain (IPR001356),Helix-turn-helix motif (IPR000047),Homeobox%2C conserved site (IPR017970);NIAS_FLcDNA=J033105B17;Manual Curation=September 21%2C 2018;Literature_PMID=30028850;Oryzabase=8450;Expression=AK121889;TENOR=Os07t0581700-01;KEGG=Os07t0581700-01;Subcellular location=nucleus (GO:0005634)
Chr07	irgsp1_rep	five_prime_UTR	23559527	23559726	.	+	.	Parent=Os07t0581700-01
Chr07	irgsp1_rep	CDS	23559727	23559805	.	+	0	Parent=Os07t0581700-01
Chr07	irgsp1_rep	CDS	23559923	23560272	.	+	2	Parent=Os07t0581700-01
Chr07	irgsp1_rep	CDS	23560361	23560654	.	+	0	Parent=Os07t0581700-01
Chr07	irgsp1_rep	three_prime_UTR	23560655	23560862	.	+	.	Parent=Os07t0581700-01
Chr07	irgsp1_rep	mRNA	23582270	23584330	.	+	.	ID=Os07t0582400-01;Name=Os07t0582400-01;Locus_id=Os07g0582400;Note=Similar to Proton myo-inositol cotransporter.;Transcript_evidence=AK059423 (DDBJ%2C Best hit),AK102676 (DDBJ%2C Best hit);ORF_evidence=B6TDG1 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=001-027-E03,J033102G08;TENOR=Os07t0582400-01
Chr07	irgsp1_rep	five_prime_UTR	23582270	23582346	.	+	.	Parent=Os07t0582400-01
Chr07	irgsp1_rep	CDS	23582347	23582458	.	+	0	Parent=Os07t0582400-01
Chr07	irgsp1_rep	CDS	23582558	23583978	.	+	2	Parent=Os07t0582400-01
Chr07	irgsp1_rep	three_prime_UTR	23583979	23584330	.	+	.	Parent=Os07t0582400-01
Chr07	irgsp1_rep	mRNA	23582354	23583907	.	-	.	ID=Os07t0582450-00;Name=Os07t0582450-00;Locus_id=Os07g0582450;Note=Hypothetical gene.;Transcript_evidence=AK368745 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0582450-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	23583333	23583907	.	-	.	Parent=Os07t0582450-00
Chr07	irgsp1_rep	CDS	23582946	23583332	.	-	0	Parent=Os07t0582450-00
Chr07	irgsp1_rep	three_prime_UTR	23582551	23582945	.	-	.	Parent=Os07t0582450-00
Chr07	irgsp1_rep	three_prime_UTR	23582354	23582453	.	-	.	Parent=Os07t0582450-00
Chr07	irgsp1_rep	mRNA	23584701	23586462	.	-	.	ID=Os07t0582500-01;Name=Os07t0582500-01;Locus_id=Os07g0582500;Note=Similar to Proton myo-inositol cotransporter.;Transcript_evidence=AK119464 (DDBJ%2C Best hit);ORF_evidence=B6TDG1 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=001-133-F04;TENOR=Os07t0582500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	23586360	23586462	.	-	0	Parent=Os07t0582500-01
Chr07	irgsp1_rep	CDS	23584797	23586217	.	-	2	Parent=Os07t0582500-01
Chr07	irgsp1_rep	three_prime_UTR	23584701	23584796	.	-	.	Parent=Os07t0582500-01
Chr07	irgsp1_rep	mRNA	23588908	23589242	.	+	.	ID=Os07t0582600-00;Name=Os07t0582600-00;Locus_id=Os07g0582600;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8B7T0 (UniProt);TENOR=Os07t0582600-00
Chr07	irgsp1_rep	CDS	23588908	23589080	.	+	0	Parent=Os07t0582600-00
Chr07	irgsp1_rep	CDS	23589140	23589242	.	+	1	Parent=Os07t0582600-00
Chr07	irgsp1_rep	mRNA	23596287	23598059	.	-	.	ID=Os07t0582700-01;Name=Os07t0582700-01;Locus_id=Os07g0582700;Note=Conserved hypothetical protein.;Transcript_evidence=AK110773 (DDBJ%2C Best hit);ORF_evidence=B9FY41 (UniProt);NIAS_FLcDNA=002-171-B03;TENOR=Os07t0582700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	23597752	23598059	.	-	.	Parent=Os07t0582700-01
Chr07	irgsp1_rep	CDS	23596819	23597751	.	-	0	Parent=Os07t0582700-01
Chr07	irgsp1_rep	three_prime_UTR	23596287	23596818	.	-	.	Parent=Os07t0582700-01
Chr07	irgsp1_rep	mRNA	23596732	23598309	.	+	.	ID=Os07t0582800-01;Name=Os07t0582800-01;Locus_id=Os07g0582800;Note=Hypothetical protein.;Transcript_evidence=AK069022 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023003P14;Expression=AK069022;TENOR=Os07t0582800-01;KEGG=Os07t0582800-01
Chr07	irgsp1_rep	five_prime_UTR	23596732	23597162	.	+	.	Parent=Os07t0582800-01
Chr07	irgsp1_rep	CDS	23597163	23597630	.	+	0	Parent=Os07t0582800-01
Chr07	irgsp1_rep	three_prime_UTR	23597631	23598309	.	+	.	Parent=Os07t0582800-01
Chr07	irgsp1_rep	mRNA	23598639	23600160	.	-	.	ID=Os07t0582850-00;Name=Os07t0582850-00;Locus_id=Os07g0582850;Note=General substrate transporter family protein.;Transcript_evidence=EU970485 (DDBJ);ORF_evidence=NP_001151375.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transmembrane transporter activity (GO:0022857);InterPro=General substrate transporter (IPR005828),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);TENOR=Os07t0582850-00;KEGG=Os07t0582850-00
Chr07	irgsp1_rep	five_prime_UTR	23600134	23600160	.	-	.	Parent=Os07t0582850-00
Chr07	irgsp1_rep	CDS	23600058	23600133	.	-	0	Parent=Os07t0582850-00
Chr07	irgsp1_rep	CDS	23598639	23599960	.	-	2	Parent=Os07t0582850-00
Chr07	irgsp1_rep	mRNA	23598769	23600319	.	+	.	ID=Os07t0582900-01;Name=Os07t0582900-01;Locus_id=Os07g0582900;Note=Conserved hypothetical protein.;Transcript_evidence=AK071660 (DDBJ%2C Best hit);ORF_evidence=B8B7T1 (UniProt);NIAS_FLcDNA=J023103C23;TENOR=Os07t0582900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	23598769	23598770	.	+	.	Parent=Os07t0582900-01
Chr07	irgsp1_rep	CDS	23598771	23599424	.	+	0	Parent=Os07t0582900-01
Chr07	irgsp1_rep	three_prime_UTR	23599425	23599789	.	+	.	Parent=Os07t0582900-01
Chr07	irgsp1_rep	three_prime_UTR	23599942	23600319	.	+	.	Parent=Os07t0582900-01
Chr07	irgsp1_rep	mRNA	23601302	23604108	.	-	.	ID=Os07t0583000-01;Name=Os07t0583000-01;Locus_id=Os07g0583000;Note=Ribosome associated membrane RAMP4 family protein.;Transcript_evidence=AK121047 (DDBJ%2C Best hit);ORF_evidence=B6SQT5 (UniProt);InterPro=Endoplasmic reticulum%2C stress-associated Ramp4 (IPR010580);NIAS_FLcDNA=J023055F01;Expression=AK121047;TENOR=Os07t0583000-01;KEGG=Os07t0583000-01
Chr07	irgsp1_rep	five_prime_UTR	23603981	23604108	.	-	.	Parent=Os07t0583000-01
Chr07	irgsp1_rep	CDS	23603978	23603980	.	-	0	Parent=Os07t0583000-01
Chr07	irgsp1_rep	CDS	23602272	23602425	.	-	0	Parent=Os07t0583000-01
Chr07	irgsp1_rep	CDS	23601494	23601540	.	-	2	Parent=Os07t0583000-01
Chr07	irgsp1_rep	three_prime_UTR	23601302	23601493	.	-	.	Parent=Os07t0583000-01
Chr07	irgsp1_rep	mRNA	23619689	23623165	.	+	.	ID=Os07t0583200-01;Name=Os07t0583200-01;Locus_id=Os07g0583200;Note=Mitochodrial transcription termination factor-related family protein.;Transcript_evidence=AK071674 (DDBJ%2C Best hit);ORF_evidence=NP_001152304.1 (RefSeq);InterPro=Mitochodrial transcription termination factor-related (IPR003690);NIAS_FLcDNA=J023107L13;Expression=AK071674;TENOR=Os07t0583200-01;KEGG=Os07t0583200-01
Chr07	irgsp1_rep	five_prime_UTR	23619689	23619718	.	+	.	Parent=Os07t0583200-01
Chr07	irgsp1_rep	CDS	23619719	23619982	.	+	0	Parent=Os07t0583200-01
Chr07	irgsp1_rep	CDS	23621032	23621104	.	+	0	Parent=Os07t0583200-01
Chr07	irgsp1_rep	CDS	23621170	23621321	.	+	2	Parent=Os07t0583200-01
Chr07	irgsp1_rep	CDS	23621414	23622103	.	+	0	Parent=Os07t0583200-01
Chr07	irgsp1_rep	CDS	23622222	23622554	.	+	0	Parent=Os07t0583200-01
Chr07	irgsp1_rep	three_prime_UTR	23622555	23622601	.	+	.	Parent=Os07t0583200-01
Chr07	irgsp1_rep	three_prime_UTR	23622697	23623165	.	+	.	Parent=Os07t0583200-01
Chr07	irgsp1_rep	mRNA	23624364	23627325	.	-	.	ID=Os07t0583300-00;Name=Os07t0583300-00;Locus_id=Os07g0583300;CGSNL Gene Symbol=C3H51;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 51;Oryzabase Gene Symbol Synonym(s)=OsC3H51;Oryzabase Gene Name Synonym(s)=Putative zinc finger CCCH domain-containing protein 51;Note=Putative zinc finger CCCH domain-containing protein 51.;Transcript_evidence=Q84ZT0 (UniProt);ORF_evidence=Q84ZT0 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA recognition motif domain (IPR000504),Zinc finger%2C CCCH-type (IPR000571),Nucleotide-binding%2C alpha-beta plait (IPR012677);Oryzabase=8618;TENOR=Os07t0583300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	23627219	23627325	.	-	0	Parent=Os07t0583300-00
Chr07	irgsp1_rep	CDS	23626149	23626889	.	-	1	Parent=Os07t0583300-00
Chr07	irgsp1_rep	CDS	23625874	23626050	.	-	1	Parent=Os07t0583300-00
Chr07	irgsp1_rep	CDS	23625607	23625780	.	-	1	Parent=Os07t0583300-00
Chr07	irgsp1_rep	CDS	23625162	23625299	.	-	1	Parent=Os07t0583300-00
Chr07	irgsp1_rep	CDS	23624693	23624775	.	-	1	Parent=Os07t0583300-00
Chr07	irgsp1_rep	CDS	23624517	23624583	.	-	2	Parent=Os07t0583300-00
Chr07	irgsp1_rep	CDS	23624364	23624403	.	-	1	Parent=Os07t0583300-00
Chr07	irgsp1_rep	mRNA	23636461	23641750	.	-	.	ID=Os07t0583500-00;Name=Os07t0583500-00;Locus_id=Os07g0583500;Note=RNA recognition motif domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001175275.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);TENOR=Os07t0583500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	23641694	23641750	.	-	0	Parent=Os07t0583500-00
Chr07	irgsp1_rep	CDS	23640898	23640996	.	-	0	Parent=Os07t0583500-00
Chr07	irgsp1_rep	CDS	23640450	23640749	.	-	0	Parent=Os07t0583500-00
Chr07	irgsp1_rep	CDS	23640142	23640359	.	-	0	Parent=Os07t0583500-00
Chr07	irgsp1_rep	CDS	23639826	23640014	.	-	1	Parent=Os07t0583500-00
Chr07	irgsp1_rep	CDS	23638509	23638814	.	-	1	Parent=Os07t0583500-00
Chr07	irgsp1_rep	CDS	23637085	23637164	.	-	1	Parent=Os07t0583500-00
Chr07	irgsp1_rep	CDS	23636844	23636960	.	-	2	Parent=Os07t0583500-00
Chr07	irgsp1_rep	CDS	23636461	23636519	.	-	2	Parent=Os07t0583500-00
Chr07	irgsp1_rep	mRNA	23650525	23654038	.	+	.	ID=Os07t0583600-01;Name=Os07t0583600-01;Locus_id=Os07g0583600;CGSNL Gene Symbol=CIGR2;CGSNL Gene Name=CHITIN INDUSIBLE GIBBERELLIN RESPONSIVE GENE 2;Oryzabase Gene Symbol Synonym(s)=OsCIGR2%2C OsGRAS-36%2C OsGRAS36%2C GRAS-36%2C GRAS36;Oryzabase Gene Name Synonym(s)=Chitin-inducible gibberellin-responsive protein 2%2C GA response modulator protein%2C GRAS protein 36;Note=Chitin-inducible gibberellin-responsive protein.;Transcript_evidence=AK122131 (DDBJ%2C Best hit);ORF_evidence=Q8GVE1 (UniProt);InterPro=Transcription factor GRAS (IPR005202);NIAS_FLcDNA=J033133B20;Oryzabase=6714;Expression=AK122131;TENOR=Os07t0583600-01;KEGG=Os07t0583600-01
Chr07	irgsp1_rep	five_prime_UTR	23650525	23650708	.	+	.	Parent=Os07t0583600-01
Chr07	irgsp1_rep	five_prime_UTR	23651952	23652125	.	+	.	Parent=Os07t0583600-01
Chr07	irgsp1_rep	CDS	23652126	23653760	.	+	0	Parent=Os07t0583600-01
Chr07	irgsp1_rep	three_prime_UTR	23653761	23654038	.	+	.	Parent=Os07t0583600-01
Chr07	irgsp1_rep	mRNA	23650573	23654038	.	+	.	ID=Os07t0583600-02;Name=Os07t0583600-02;Locus_id=Os07g0583600;CGSNL Gene Symbol=CIGR2;CGSNL Gene Name=CHITIN INDUSIBLE GIBBERELLIN RESPONSIVE GENE 2;Oryzabase Gene Symbol Synonym(s)=OsCIGR2%2C OsGRAS-36%2C OsGRAS36%2C GRAS-36%2C GRAS36;Oryzabase Gene Name Synonym(s)=Chitin-inducible gibberellin-responsive protein 2%2C GA response modulator protein%2C GRAS protein 36;Note=Chitin-inducible gibberellin-responsive protein.;Transcript_evidence=AK098890 (DDBJ%2C Best hit),AK073470 (DDBJ%2C Best hit);ORF_evidence=Q8GVE1 (UniProt);InterPro=Transcription factor GRAS (IPR005202);NIAS_FLcDNA=J013001M01,J033044I02;Oryzabase=6714;Expression=AK098890;TENOR=Os07t0583600-02;KEGG=Os07t0583600-02
Chr07	irgsp1_rep	five_prime_UTR	23650573	23650708	.	+	.	Parent=Os07t0583600-02
Chr07	irgsp1_rep	five_prime_UTR	23651952	23652125	.	+	.	Parent=Os07t0583600-02
Chr07	irgsp1_rep	CDS	23652126	23653760	.	+	0	Parent=Os07t0583600-02
Chr07	irgsp1_rep	three_prime_UTR	23653761	23654038	.	+	.	Parent=Os07t0583600-02
Chr07	irgsp1_rep	mRNA	23652729	23654071	.	+	.	ID=Os07t0583600-03;Name=Os07t0583600-03;Locus_id=Os07g0583600;CGSNL Gene Symbol=CIGR2;CGSNL Gene Name=CHITIN INDUSIBLE GIBBERELLIN RESPONSIVE GENE 2;Oryzabase Gene Symbol Synonym(s)=OsCIGR2%2C OsGRAS-36%2C OsGRAS36%2C GRAS-36%2C GRAS36;Oryzabase Gene Name Synonym(s)=Chitin-inducible gibberellin-responsive protein 2%2C GA response modulator protein%2C GRAS protein 36;Note=Similar to Chitin-inducible gibberellin-responsive protein 2.;Transcript_evidence=AK061928 (DDBJ%2C Best hit);ORF_evidence=Q8GVE1 (UniProt);InterPro=Transcription factor GRAS (IPR005202);NIAS_FLcDNA=001-042-C06;Oryzabase=6714;Expression=AK061928;TENOR=Os07t0583600-03;KEGG=Os07t0583600-03
Chr07	irgsp1_rep	CDS	23652729	23653760	.	+	0	Parent=Os07t0583600-03
Chr07	irgsp1_rep	three_prime_UTR	23653761	23654071	.	+	.	Parent=Os07t0583600-03
Chr07	irgsp1_rep	mRNA	23654137	23659609	.	-	.	ID=Os07t0583700-01;Name=Os07t0583700-01;Locus_id=Os07g0583700;CGSNL Gene Symbol=WRKY87;CGSNL Gene Name=WRKY GENE 87;Oryzabase Gene Symbol Synonym(s)=OsWRKY87%2C OsSUSIBA2-like;Oryzabase Gene Name Synonym(s)=Rice WRKY gene87%2C SUSABA2 Ortholog%2C Sugar signalling in barley 2-like;Note=WRKY transcription factor 78.;Transcript_evidence=AK070537 (DDBJ%2C Best hit);ORF_evidence=Q5HZ67 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);NIAS_FLcDNA=J023062H03;Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6593;Expression=AK070537;TENOR=Os07t0583700-01;KEGG=Os07t0583700-01
Chr07	irgsp1_rep	five_prime_UTR	23659565	23659609	.	-	.	Parent=Os07t0583700-01
Chr07	irgsp1_rep	CDS	23659319	23659564	.	-	0	Parent=Os07t0583700-01
Chr07	irgsp1_rep	CDS	23658085	23658258	.	-	0	Parent=Os07t0583700-01
Chr07	irgsp1_rep	CDS	23656538	23657081	.	-	0	Parent=Os07t0583700-01
Chr07	irgsp1_rep	CDS	23655771	23655936	.	-	2	Parent=Os07t0583700-01
Chr07	irgsp1_rep	CDS	23655526	23655684	.	-	1	Parent=Os07t0583700-01
Chr07	irgsp1_rep	CDS	23654562	23655129	.	-	1	Parent=Os07t0583700-01
Chr07	irgsp1_rep	three_prime_UTR	23654137	23654561	.	-	.	Parent=Os07t0583700-01
Chr07	irgsp1_rep	mRNA	23673059	23676367	.	+	.	ID=Os07t0584000-01;Name=Os07t0584000-01;Locus_id=Os07g0584000;Note=Similar to Yippee-like protein CG15309.;Transcript_evidence=AK073870 (DDBJ%2C Best hit);ORF_evidence=NP_001149192.1 (RefSeq);InterPro=Yippee-like protein (IPR004910);NIAS_FLcDNA=J033072I01;Expression=AK073870;TENOR=Os07t0584000-01;KEGG=Os07t0584000-01
Chr07	irgsp1_rep	five_prime_UTR	23673059	23673393	.	+	.	Parent=Os07t0584000-01
Chr07	irgsp1_rep	CDS	23673394	23673536	.	+	0	Parent=Os07t0584000-01
Chr07	irgsp1_rep	CDS	23674659	23674767	.	+	1	Parent=Os07t0584000-01
Chr07	irgsp1_rep	CDS	23676134	23676214	.	+	0	Parent=Os07t0584000-01
Chr07	irgsp1_rep	three_prime_UTR	23676215	23676367	.	+	.	Parent=Os07t0584000-01
Chr07	irgsp1_rep	mRNA	23677863	23679919	.	+	.	ID=Os07t0584100-01;Name=Os07t0584100-01;Locus_id=Os07g0584100;CGSNL Gene Symbol=WNK5;CGSNL Gene Name=WITH NO LYSINE KINASE 5;Oryzabase Gene Symbol Synonym(s)=OsWNK5;Oryzabase Gene Name Synonym(s)=With No Lysine kinase 5%2C WNK protein kinase 5%2C WNK kinase 5;Note=Similar to MAP kinase-like protein.;Transcript_evidence=AK072014 (DDBJ%2C Best hit),AK072176 (DDBJ%2C Best hit),AK105268 (DDBJ%2C Best hit);ORF_evidence=B6U4T7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013106D12,J013144N02,001-115-E02;Oryzabase=20440;TENOR=Os07t0584100-01
Chr07	irgsp1_rep	five_prime_UTR	23677863	23677939	.	+	.	Parent=Os07t0584100-01
Chr07	irgsp1_rep	CDS	23677940	23678533	.	+	0	Parent=Os07t0584100-01
Chr07	irgsp1_rep	CDS	23679161	23679550	.	+	0	Parent=Os07t0584100-01
Chr07	irgsp1_rep	three_prime_UTR	23679551	23679919	.	+	.	Parent=Os07t0584100-01
Chr07	irgsp1_rep	mRNA	23685409	23688256	.	+	.	ID=Os07t0584200-01;Name=Os07t0584200-01;Locus_id=Os07g0584200;Note=BTB/POZ fold domain containing protein.;Transcript_evidence=AK102803 (DDBJ%2C Best hit);ORF_evidence=Q7F261 (UniProt);GO=Biological Process: response to light stimulus (GO:0009416),Molecular Function: signal transducer activity (GO:0004871);InterPro=NPH3 (IPR004249),BTB/POZ fold (IPR011333);NIAS_FLcDNA=J033108G13;Expression=AK102803;TENOR=Os07t0584200-01;KEGG=Os07t0584200-01
Chr07	irgsp1_rep	five_prime_UTR	23685409	23685409	.	+	.	Parent=Os07t0584200-01
Chr07	irgsp1_rep	CDS	23685410	23685522	.	+	0	Parent=Os07t0584200-01
Chr07	irgsp1_rep	CDS	23685611	23685680	.	+	1	Parent=Os07t0584200-01
Chr07	irgsp1_rep	CDS	23685775	23686947	.	+	0	Parent=Os07t0584200-01
Chr07	irgsp1_rep	CDS	23687048	23687274	.	+	0	Parent=Os07t0584200-01
Chr07	irgsp1_rep	CDS	23687604	23687688	.	+	1	Parent=Os07t0584200-01
Chr07	irgsp1_rep	three_prime_UTR	23687689	23688256	.	+	.	Parent=Os07t0584200-01
Chr07	irgsp1_rep	mRNA	23685822	23687516	.	-	.	ID=Os07t0584283-00;Name=Os07t0584283-00;Locus_id=Os07g0584283;Note=Hypothetical protein.;Transcript_evidence=BT060652 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0584283-00
Chr07	irgsp1_rep	five_prime_UTR	23686768	23687516	.	-	.	Parent=Os07t0584283-00
Chr07	irgsp1_rep	CDS	23685822	23686767	.	-	0	Parent=Os07t0584283-00
Chr07	irgsp1_rep	mRNA	23693402	23695460	.	-	.	ID=Os07t0584366-00;Name=Os07t0584366-00;Locus_id=Os07g0584366;Note=Hypothetical gene.;Transcript_evidence=CT837517 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os07t0584366-00;KEGG=Os07t0584366-00
Chr07	irgsp1_rep	five_prime_UTR	23695460	23695460	.	-	.	Parent=Os07t0584366-00
Chr07	irgsp1_rep	CDS	23694975	23695459	.	-	0	Parent=Os07t0584366-00
Chr07	irgsp1_rep	CDS	23694714	23694717	.	-	1	Parent=Os07t0584366-00
Chr07	irgsp1_rep	three_prime_UTR	23694543	23694713	.	-	.	Parent=Os07t0584366-00
Chr07	irgsp1_rep	three_prime_UTR	23693402	23693687	.	-	.	Parent=Os07t0584366-00
Chr07	irgsp1_rep	mRNA	23704154	23708928	.	+	.	ID=Os07t0584500-01;Name=Os07t0584500-01;Locus_id=Os07g0584500;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK067725 (DDBJ%2C Best hit);ORF_evidence=B6TAS3 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013116G21;Expression=AK067725;TENOR=Os07t0584500-01;KEGG=Os07t0584500-01
Chr07	irgsp1_rep	five_prime_UTR	23704154	23704599	.	+	.	Parent=Os07t0584500-01
Chr07	irgsp1_rep	five_prime_UTR	23704958	23704982	.	+	.	Parent=Os07t0584500-01
Chr07	irgsp1_rep	CDS	23704983	23705204	.	+	0	Parent=Os07t0584500-01
Chr07	irgsp1_rep	CDS	23705343	23706525	.	+	0	Parent=Os07t0584500-01
Chr07	irgsp1_rep	CDS	23708337	23708350	.	+	2	Parent=Os07t0584500-01
Chr07	irgsp1_rep	three_prime_UTR	23708351	23708928	.	+	.	Parent=Os07t0584500-01
Chr07	irgsp1_rep	mRNA	23704931	23708852	.	+	.	ID=Os07t0584500-02;Name=Os07t0584500-02;Locus_id=Os07g0584500;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK121109 (DDBJ%2C Best hit);ORF_evidence=B6TAS3 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023072P12;Expression=AK121109;TENOR=Os07t0584500-02;KEGG=Os07t0584500-02
Chr07	irgsp1_rep	five_prime_UTR	23704931	23704982	.	+	.	Parent=Os07t0584500-02
Chr07	irgsp1_rep	CDS	23704983	23705204	.	+	0	Parent=Os07t0584500-02
Chr07	irgsp1_rep	CDS	23705343	23706525	.	+	0	Parent=Os07t0584500-02
Chr07	irgsp1_rep	CDS	23708337	23708350	.	+	2	Parent=Os07t0584500-02
Chr07	irgsp1_rep	three_prime_UTR	23708351	23708852	.	+	.	Parent=Os07t0584500-02
Chr07	irgsp1_rep	mRNA	23706154	23708855	.	-	.	ID=Os07t0584550-00;Name=Os07t0584550-00;Locus_id=Os07g0584550;Note=Non-protein coding transcript.;Transcript_evidence=BT016400 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0584550-00
Chr07	irgsp1_rep	exon	23708335	23708855	.	-	.	Parent=Os07t0584550-00
Chr07	irgsp1_rep	exon	23706154	23706523	.	-	.	Parent=Os07t0584550-00
Chr07	irgsp1_rep	mRNA	23715142	23715631	.	-	.	ID=Os07t0584750-00;Name=Os07t0584750-00;Locus_id=Os07g0584750;Note=Similar to OSIGBa0147H17.4 protein.;Transcript_evidence=AK332355 (DDBJ);ORF_evidence=Q01JW9 (UniProt);TENOR=Os07t0584750-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	23715613	23715631	.	-	.	Parent=Os07t0584750-00
Chr07	irgsp1_rep	CDS	23715142	23715612	.	-	0	Parent=Os07t0584750-00
Chr07	irgsp1_rep	mRNA	23721772	23724511	.	+	.	ID=Os07t0584900-01;Name=Os07t0584900-01;Locus_id=Os07g0584900;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK058404 (DDBJ%2C Best hit),AK059561 (DDBJ%2C Best hit);ORF_evidence=NP_001150691.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=001-015-B09,001-029-H02;Expression=AK058404;TENOR=Os07t0584900-01;KEGG=Os07t0584900-01
Chr07	irgsp1_rep	five_prime_UTR	23721772	23721912	.	+	.	Parent=Os07t0584900-01
Chr07	irgsp1_rep	CDS	23721913	23723223	.	+	0	Parent=Os07t0584900-01
Chr07	irgsp1_rep	CDS	23724255	23724347	.	+	0	Parent=Os07t0584900-01
Chr07	irgsp1_rep	three_prime_UTR	23724348	23724511	.	+	.	Parent=Os07t0584900-01
Chr07	irgsp1_rep	mRNA	23746485	23748665	.	+	.	ID=Os07t0585000-01;Name=Os07t0585000-01;Locus_id=Os07g0585000;Note=C2 calcium-dependent membrane targeting domain containing protein.;Transcript_evidence=AK071269 (DDBJ%2C Best hit);ORF_evidence=B6TYM4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973);NIAS_FLcDNA=J023088L08;Expression=AK071269;TENOR=Os07t0585000-01;KEGG=Os07t0585000-01
Chr07	irgsp1_rep	five_prime_UTR	23746485	23746610	.	+	.	Parent=Os07t0585000-01
Chr07	irgsp1_rep	five_prime_UTR	23747104	23747128	.	+	.	Parent=Os07t0585000-01
Chr07	irgsp1_rep	CDS	23747129	23748466	.	+	0	Parent=Os07t0585000-01
Chr07	irgsp1_rep	three_prime_UTR	23748467	23748665	.	+	.	Parent=Os07t0585000-01
Chr07	irgsp1_rep	mRNA	23753108	23760548	.	+	.	ID=Os07t0585100-01;Name=Os07t0585100-01;Locus_id=Os07g0585100;Note=Mo25-like domain containing protein.;Transcript_evidence=AK103268 (DDBJ%2C Best hit);ORF_evidence=NP_199565.4 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Mo25-like (IPR013878),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033124H02;Expression=AK103268;TENOR=Os07t0585100-01;KEGG=Os07t0585100-01
Chr07	irgsp1_rep	five_prime_UTR	23753108	23754241	.	+	.	Parent=Os07t0585100-01
Chr07	irgsp1_rep	CDS	23754242	23754367	.	+	0	Parent=Os07t0585100-01
Chr07	irgsp1_rep	CDS	23755289	23755450	.	+	0	Parent=Os07t0585100-01
Chr07	irgsp1_rep	CDS	23755563	23755681	.	+	0	Parent=Os07t0585100-01
Chr07	irgsp1_rep	CDS	23756708	23756782	.	+	1	Parent=Os07t0585100-01
Chr07	irgsp1_rep	CDS	23757967	23758060	.	+	1	Parent=Os07t0585100-01
Chr07	irgsp1_rep	CDS	23758436	23758495	.	+	0	Parent=Os07t0585100-01
Chr07	irgsp1_rep	CDS	23758663	23758731	.	+	0	Parent=Os07t0585100-01
Chr07	irgsp1_rep	CDS	23759037	23759135	.	+	0	Parent=Os07t0585100-01
Chr07	irgsp1_rep	CDS	23759781	23759825	.	+	0	Parent=Os07t0585100-01
Chr07	irgsp1_rep	CDS	23759919	23760021	.	+	0	Parent=Os07t0585100-01
Chr07	irgsp1_rep	CDS	23760245	23760303	.	+	2	Parent=Os07t0585100-01
Chr07	irgsp1_rep	three_prime_UTR	23760304	23760548	.	+	.	Parent=Os07t0585100-01
Chr07	irgsp1_rep	mRNA	23764832	23765807	.	-	.	ID=Os07t0585200-01;Name=Os07t0585200-01;Locus_id=Os07g0585200;CGSNL Gene Symbol=HYPRP24;CGSNL Gene Name=HYBRID PROLINE-RICH PROTEIN 24;Oryzabase Gene Symbol Synonym(s)=OsHyPRP24%2C HyPRP24;Oryzabase Gene Name Synonym(s)=Hybrid Proline-Rich Protein 24;Note=Bifunctional inhibitor/plant lipid transfer protein/seed storage domain containing protein.;Transcript_evidence=AK242443 (DDBJ%2C Best hit);ORF_evidence=A2YL71 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=J080094H03;Oryzabase=23416;TENOR=Os07t0585200-01;KEGG=Os07t0585200-01
Chr07	irgsp1_rep	five_prime_UTR	23765799	23765807	.	-	.	Parent=Os07t0585200-01
Chr07	irgsp1_rep	CDS	23765213	23765798	.	-	0	Parent=Os07t0585200-01
Chr07	irgsp1_rep	CDS	23765016	23765044	.	-	2	Parent=Os07t0585200-01
Chr07	irgsp1_rep	three_prime_UTR	23764832	23765015	.	-	.	Parent=Os07t0585200-01
Chr07	irgsp1_rep	mRNA	23768304	23770166	.	+	.	ID=Os07t0585300-01;Name=Os07t0585300-01;Locus_id=Os07g0585300;Note=Similar to H0815C01.6 protein.;Transcript_evidence=AK288889 (DDBJ%2C Best hit);ORF_evidence=Q01J90 (UniProt);NIAS_FLcDNA=J090080B10;TENOR=Os07t0585300-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	23768304	23769061	.	+	.	Parent=Os07t0585300-01
Chr07	irgsp1_rep	CDS	23769062	23769301	.	+	0	Parent=Os07t0585300-01
Chr07	irgsp1_rep	three_prime_UTR	23769302	23770166	.	+	.	Parent=Os07t0585300-01
Chr07	irgsp1_rep	mRNA	23782164	23783828	.	+	.	ID=Os07t0585500-01;Name=Os07t0585500-01;Locus_id=Os07g0585500;RAP-DB Gene Symbol Synonym(s)=OSPGYRP%2C OsPGYRP;RAP-DB Gene Name Synonym(s)="Rice proline-%2C glycine and tyrosine-rich protein";Note="Rice proline-%2C glycine and tyrosine-rich protein"%2C Vesicle trafficking%2C Cold tolerance;Transcript_evidence=AK070285;ORF_evidence=Q7F1U6;InterPro=Cysteine-rich transmembrane CYSTM domain (IPR028144);NIAS_FLcDNA=J023048B07;Manual Curation=October 29%2C 2020;Literature_PMID=19205894;TENOR=Os07t0585500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=vesicle (GO:0031982)
Chr07	irgsp1_rep	five_prime_UTR	23782164	23782221	.	+	.	Parent=Os07t0585500-01
Chr07	irgsp1_rep	CDS	23782222	23782270	.	+	0	Parent=Os07t0585500-01
Chr07	irgsp1_rep	CDS	23782412	23782586	.	+	2	Parent=Os07t0585500-01
Chr07	irgsp1_rep	CDS	23783508	23783553	.	+	1	Parent=Os07t0585500-01
Chr07	irgsp1_rep	three_prime_UTR	23783554	23783828	.	+	.	Parent=Os07t0585500-01
Chr07	irgsp1_rep	mRNA	23785032	23791079	.	-	.	ID=Os07t0585600-01;Name=Os07t0585600-01;Locus_id=Os07g0585600;Note=Similar to N-acetyl-glutamate synthase.;Transcript_evidence=AK240739 (DDBJ%2C Best hit);ORF_evidence=C4NFG1 (UniProt);GO=Biological Process: arginine biosynthetic process (GO:0006526),Biological Process: metabolic process (GO:0008152),Biological Process: cellular amino acid biosynthetic process (GO:0008652),Cellular Component: cytoplasm (GO:0005737),Molecular Function: acetyl-CoA:L-glutamate N-acetyltransferase activity (GO:0004042),Molecular Function: N-acetyltransferase activity (GO:0008080);InterPro=GCN5-related N-acetyltransferase (GNAT) domain (IPR000182),Aspartate/glutamate/uridylate kinase (IPR001048),Amino-acid N-acetyltransferase (ArgA) (IPR010167),Acyl-CoA N-acyltransferase (IPR016181);NIAS_FLcDNA=J043034E24;TENOR=Os07t0585600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	23790933	23791079	.	-	0	Parent=Os07t0585600-01
Chr07	irgsp1_rep	CDS	23790288	23790375	.	-	0	Parent=Os07t0585600-01
Chr07	irgsp1_rep	CDS	23789382	23789590	.	-	2	Parent=Os07t0585600-01
Chr07	irgsp1_rep	CDS	23788395	23788546	.	-	0	Parent=Os07t0585600-01
Chr07	irgsp1_rep	CDS	23787787	23788195	.	-	1	Parent=Os07t0585600-01
Chr07	irgsp1_rep	CDS	23787504	23787601	.	-	0	Parent=Os07t0585600-01
Chr07	irgsp1_rep	CDS	23787012	23787123	.	-	1	Parent=Os07t0585600-01
Chr07	irgsp1_rep	CDS	23786750	23786909	.	-	0	Parent=Os07t0585600-01
Chr07	irgsp1_rep	CDS	23785917	23785989	.	-	2	Parent=Os07t0585600-01
Chr07	irgsp1_rep	CDS	23785332	23785485	.	-	1	Parent=Os07t0585600-01
Chr07	irgsp1_rep	three_prime_UTR	23785032	23785331	.	-	.	Parent=Os07t0585600-01
Chr07	irgsp1_rep	mRNA	23796611	23797642	.	+	.	ID=Os07t0585700-01;Name=Os07t0585700-01;Locus_id=Os07g0585700;RAP-DB Gene Symbol Synonym(s)=SDR4%2C Sdr4%2C OsSdr4%2C OsSdr4-n%2C OsSdr4-k;RAP-DB Gene Name Synonym(s)=SEED DORMANCY 4;CGSNL Gene Symbol=SDR4;CGSNL Gene Name=SEED DORMANCY 4;Oryzabase Gene Symbol Synonym(s)=Sdr4%2C OsSdr4%2C OsSdr4-n%2C OsSdr4-k%2C OsSdr4L%2C Sdr4L;Oryzabase Gene Name Synonym(s)=Sdr4-like;Note=Zinc finger protein%2C Pre-harvest sprouting resistance;Transcript_evidence=AB510199 (DDBJ);ORF_evidence=Q8H5K8 (UniProt);Manual Curation=April 19%2C 2010;Literature_PMID=20220098;Oryzabase=8787;TENOR=Os07t0585700-01
Chr07	irgsp1_rep	CDS	23796611	23797642	.	+	0	Parent=Os07t0585700-01
Chr07	irgsp1_rep	mRNA	23798071	23802654	.	-	.	ID=Os07t0585800-01;Name=Os07t0585800-01;Locus_id=Os07g0585800;Note=Similar to NADH-ubiquinone oxidoreductase 18 kDa subunit (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-18KD) (CI-18KD) (Fragment).;Transcript_evidence=AK105064 (DDBJ%2C Best hit),AK066419 (DDBJ%2C Best hit);ORF_evidence=B6SRH1 (UniProt);GO=Biological Process: electron transport chain (GO:0022900),Cellular Component: mitochondrial inner membrane (GO:0005743),Molecular Function: oxidoreductase activity%2C acting on NADH or NADPH (GO:0016651);InterPro=NADH dehydrogenase ubiquinone Fe-S protein 4%2C mitochondrial (IPR006885);NIAS_FLcDNA=001-044-E08,J013066N17;TENOR=Os07t0585800-01
Chr07	irgsp1_rep	five_prime_UTR	23802546	23802654	.	-	.	Parent=Os07t0585800-01
Chr07	irgsp1_rep	CDS	23802375	23802545	.	-	0	Parent=Os07t0585800-01
Chr07	irgsp1_rep	CDS	23801011	23801099	.	-	0	Parent=Os07t0585800-01
Chr07	irgsp1_rep	CDS	23800428	23800557	.	-	1	Parent=Os07t0585800-01
Chr07	irgsp1_rep	CDS	23799724	23799753	.	-	0	Parent=Os07t0585800-01
Chr07	irgsp1_rep	CDS	23798329	23798388	.	-	0	Parent=Os07t0585800-01
Chr07	irgsp1_rep	three_prime_UTR	23798071	23798328	.	-	.	Parent=Os07t0585800-01
Chr07	irgsp1_rep	mRNA	23807453	23808545	.	+	.	ID=Os07t0585900-00;Name=Os07t0585900-00;Locus_id=Os07g0585900;Note=Hypothetical conserved gene.;Transcript_evidence=FP093392 (DDBJ);ORF_evidence=Q8GRW3 (UniProt);TENOR=Os07t0585900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	23807453	23807453	.	+	.	Parent=Os07t0585900-00
Chr07	irgsp1_rep	CDS	23807454	23808332	.	+	0	Parent=Os07t0585900-00
Chr07	irgsp1_rep	three_prime_UTR	23808333	23808545	.	+	.	Parent=Os07t0585900-00
Chr07	irgsp1_rep	mRNA	23808864	23812506	.	-	.	ID=Os07t0586000-01;Name=Os07t0586000-01;Locus_id=Os07g0586000;Note=Similar to ZCW7.;Transcript_evidence=AK069212 (DDBJ%2C Best hit);ORF_evidence=B6TC50 (UniProt);NIAS_FLcDNA=J023012B09;TENOR=Os07t0586000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	23812422	23812506	.	-	.	Parent=Os07t0586000-01
Chr07	irgsp1_rep	CDS	23811828	23812421	.	-	0	Parent=Os07t0586000-01
Chr07	irgsp1_rep	three_prime_UTR	23810724	23811827	.	-	.	Parent=Os07t0586000-01
Chr07	irgsp1_rep	three_prime_UTR	23809544	23809717	.	-	.	Parent=Os07t0586000-01
Chr07	irgsp1_rep	three_prime_UTR	23808864	23809242	.	-	.	Parent=Os07t0586000-01
Chr07	irgsp1_rep	mRNA	23814222	23816459	.	-	.	ID=Os07t0586100-01;Name=Os07t0586100-01;Locus_id=Os07g0586100;CGSNL Gene Symbol=GELP91;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 91;Oryzabase Gene Symbol Synonym(s)=OsGELP91;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 91;Note=Similar to Esterase precursor (EC 3.1.1.-) (Early nodule-specific protein homolog) (Latex allergen Hev b 13).;Transcript_evidence=AK071404 (DDBJ%2C Best hit);ORF_evidence=B6TMS8 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087),Esterase%2C SGNH hydrolase-type (IPR013830);NIAS_FLcDNA=J023092E11;Oryzabase=11041;Expression=AK071404;TENOR=Os07t0586100-01;KEGG=Os07t0586100-01
Chr07	irgsp1_rep	five_prime_UTR	23816400	23816459	.	-	.	Parent=Os07t0586100-01
Chr07	irgsp1_rep	CDS	23816111	23816399	.	-	0	Parent=Os07t0586100-01
Chr07	irgsp1_rep	CDS	23815814	23816026	.	-	2	Parent=Os07t0586100-01
Chr07	irgsp1_rep	CDS	23815543	23815712	.	-	2	Parent=Os07t0586100-01
Chr07	irgsp1_rep	CDS	23814747	23815017	.	-	0	Parent=Os07t0586100-01
Chr07	irgsp1_rep	CDS	23814382	23814656	.	-	2	Parent=Os07t0586100-01
Chr07	irgsp1_rep	three_prime_UTR	23814222	23814381	.	-	.	Parent=Os07t0586100-01
Chr07	irgsp1_rep	mRNA	23820394	23824129	.	-	.	ID=Os07t0586200-01;Name=Os07t0586200-01;Locus_id=Os07g0586200;CGSNL Gene Symbol=GELP92;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 92;Oryzabase Gene Symbol Synonym(s)=OsGELP92%2C OsGELP92a%2C OsGELP92b%2C OsGELP92c%2C AChE;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 92%2C acetylcholinesterase;Note=Similar to Esterase precursor (EC 3.1.1.-) (Early nodule-specific protein homolog) (Latex allergen Hev b 13).;Transcript_evidence=AK073754 (DDBJ%2C Best hit);ORF_evidence=B4FZ87 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=J033067M09;Oryzabase=11042;TENOR=Os07t0586200-01
Chr07	irgsp1_rep	five_prime_UTR	23823726	23824129	.	-	.	Parent=Os07t0586200-01
Chr07	irgsp1_rep	CDS	23823476	23823725	.	-	0	Parent=Os07t0586200-01
Chr07	irgsp1_rep	CDS	23821917	23822129	.	-	2	Parent=Os07t0586200-01
Chr07	irgsp1_rep	CDS	23821652	23821821	.	-	2	Parent=Os07t0586200-01
Chr07	irgsp1_rep	CDS	23820922	23821192	.	-	0	Parent=Os07t0586200-01
Chr07	irgsp1_rep	CDS	23820568	23820839	.	-	2	Parent=Os07t0586200-01
Chr07	irgsp1_rep	three_prime_UTR	23820394	23820567	.	-	.	Parent=Os07t0586200-01
Chr07	irgsp1_rep	mRNA	23820385	23822130	.	-	.	ID=Os07t0586200-02;Name=Os07t0586200-02;Locus_id=Os07g0586200;CGSNL Gene Symbol=GELP92;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 92;Oryzabase Gene Symbol Synonym(s)=OsGELP92%2C OsGELP92a%2C OsGELP92b%2C OsGELP92c%2C AChE;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 92%2C acetylcholinesterase;Note=Similar to Alpha-L-fucosidase 2.;Transcript_evidence=AK060131 (DDBJ%2C Best hit);ORF_evidence=B4FZ87 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=006-309-B10;Oryzabase=11042;Expression=AK060131;TENOR=Os07t0586200-02;KEGG=Os07t0586200-02
Chr07	irgsp1_rep	CDS	23821917	23822130	.	-	0	Parent=Os07t0586200-02
Chr07	irgsp1_rep	CDS	23821652	23821821	.	-	2	Parent=Os07t0586200-02
Chr07	irgsp1_rep	CDS	23820922	23821192	.	-	0	Parent=Os07t0586200-02
Chr07	irgsp1_rep	CDS	23820568	23820839	.	-	2	Parent=Os07t0586200-02
Chr07	irgsp1_rep	three_prime_UTR	23820385	23820567	.	-	.	Parent=Os07t0586200-02
Chr07	irgsp1_rep	mRNA	23820394	23823499	.	-	.	ID=Os07t0586200-03;Name=Os07t0586200-03;Locus_id=Os07g0586200;CGSNL Gene Symbol=GELP92;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 92;Oryzabase Gene Symbol Synonym(s)=OsGELP92%2C OsGELP92a%2C OsGELP92b%2C OsGELP92c%2C AChE;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 92%2C acetylcholinesterase;Note=Similar to Alpha-L-fucosidase 2.;Transcript_evidence=AK099293 (DDBJ%2C Best hit);ORF_evidence=B4FZ87 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=J023135D02;Oryzabase=11042;TENOR=Os07t0586200-03
Chr07	irgsp1_rep	five_prime_UTR	23823498	23823499	.	-	.	Parent=Os07t0586200-03
Chr07	irgsp1_rep	CDS	23823476	23823497	.	-	0	Parent=Os07t0586200-03
Chr07	irgsp1_rep	CDS	23821917	23822129	.	-	2	Parent=Os07t0586200-03
Chr07	irgsp1_rep	CDS	23821652	23821821	.	-	2	Parent=Os07t0586200-03
Chr07	irgsp1_rep	CDS	23820922	23821192	.	-	0	Parent=Os07t0586200-03
Chr07	irgsp1_rep	CDS	23820568	23820839	.	-	2	Parent=Os07t0586200-03
Chr07	irgsp1_rep	three_prime_UTR	23820394	23820567	.	-	.	Parent=Os07t0586200-03
Chr07	irgsp1_rep	mRNA	23823472	23824223	.	+	.	ID=Os07t0586266-00;Name=Os07t0586266-00;Locus_id=Os07g0586266;Note=Hypothetical protein.;Transcript_evidence=EU949155 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0586266-00
Chr07	irgsp1_rep	five_prime_UTR	23823472	23823522	.	+	.	Parent=Os07t0586266-00
Chr07	irgsp1_rep	CDS	23823523	23823684	.	+	0	Parent=Os07t0586266-00
Chr07	irgsp1_rep	CDS	23824112	23824223	.	+	0	Parent=Os07t0586266-00
Chr07	irgsp1_rep	mRNA	23833292	23840024	.	+	.	ID=Os07t0586500-01;Name=Os07t0586500-01;Locus_id=Os07g0586500;CGSNL Gene Symbol=SAE2;CGSNL Gene Name=SUMO-ACTIVATING ENZYME 2;Oryzabase Gene Symbol Synonym(s)=OsSAE2%2C OsSAE2.1%2C OsSAE2.2%2C OsSAE2.3;Oryzabase Gene Name Synonym(s)=SUMO-activating enzyme 2%2C E1 SUMO-activating enzyme 2%2C E1 enzyme SAE2;Note=Similar to predicted protein.;Transcript_evidence=AK072668 (DDBJ%2C Best hit);ORF_evidence=XP_002992493.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824);InterPro=UBA/THIF-type NAD/FAD binding fold (IPR000594),Molybdenum cofactor biosynthesis%2C MoeB (IPR009036),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023134N17;Oryzabase=22915;Expression=AK072668;TENOR=Os07t0586500-01;KEGG=Os07t0586500-01 (EC:6.3.2.19)
Chr07	irgsp1_rep	five_prime_UTR	23833292	23833520	.	+	.	Parent=Os07t0586500-01
Chr07	irgsp1_rep	CDS	23833521	23833568	.	+	0	Parent=Os07t0586500-01
Chr07	irgsp1_rep	CDS	23833682	23833771	.	+	0	Parent=Os07t0586500-01
Chr07	irgsp1_rep	CDS	23835160	23835243	.	+	0	Parent=Os07t0586500-01
Chr07	irgsp1_rep	CDS	23835372	23835599	.	+	0	Parent=Os07t0586500-01
Chr07	irgsp1_rep	three_prime_UTR	23835600	23836554	.	+	.	Parent=Os07t0586500-01
Chr07	irgsp1_rep	three_prime_UTR	23837389	23838141	.	+	.	Parent=Os07t0586500-01
Chr07	irgsp1_rep	three_prime_UTR	23838329	23838422	.	+	.	Parent=Os07t0586500-01
Chr07	irgsp1_rep	three_prime_UTR	23838511	23838693	.	+	.	Parent=Os07t0586500-01
Chr07	irgsp1_rep	three_prime_UTR	23838834	23838931	.	+	.	Parent=Os07t0586500-01
Chr07	irgsp1_rep	three_prime_UTR	23839411	23840024	.	+	.	Parent=Os07t0586500-01
Chr07	irgsp1_rep	mRNA	23833418	23840102	.	+	.	ID=Os07t0586500-02;Name=Os07t0586500-02;Locus_id=Os07g0586500;CGSNL Gene Symbol=SAE2;CGSNL Gene Name=SUMO-ACTIVATING ENZYME 2;Oryzabase Gene Symbol Synonym(s)=OsSAE2%2C OsSAE2.1%2C OsSAE2.2%2C OsSAE2.3;Oryzabase Gene Name Synonym(s)=SUMO-activating enzyme 2%2C E1 SUMO-activating enzyme 2%2C E1 enzyme SAE2;Note=Similar to SUMO activating enzyme 2.;Transcript_evidence=AK120683 (DDBJ%2C Best hit);ORF_evidence=NP_973506.1 (RefSeq);GO=Biological Process: protein modification process (GO:0006464),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524),Molecular Function: small protein activating enzyme activity (GO:0008641);InterPro=Ubiquitin-activating enzyme repeat (IPR000127),UBA/THIF-type NAD/FAD binding fold (IPR000594),Molybdenum cofactor biosynthesis%2C MoeB (IPR009036),NAD(P)-binding domain (IPR016040),Ubiquitin-activating enzyme (IPR019572),Ubiquitin-like 1 activating enzyme%2C catalytic cysteine domain (IPR023280);NIAS_FLcDNA=J013164A10;Oryzabase=22915;Expression=AK120683;TENOR=Os07t0586500-02;KEGG=Os07t0586500-02 (EC:6.3.2.19)
Chr07	irgsp1_rep	five_prime_UTR	23833418	23833520	.	+	.	Parent=Os07t0586500-02
Chr07	irgsp1_rep	CDS	23833521	23833568	.	+	0	Parent=Os07t0586500-02
Chr07	irgsp1_rep	CDS	23833682	23833771	.	+	0	Parent=Os07t0586500-02
Chr07	irgsp1_rep	CDS	23835160	23835243	.	+	0	Parent=Os07t0586500-02
Chr07	irgsp1_rep	CDS	23835372	23835590	.	+	0	Parent=Os07t0586500-02
Chr07	irgsp1_rep	CDS	23836453	23836554	.	+	0	Parent=Os07t0586500-02
Chr07	irgsp1_rep	CDS	23837389	23837832	.	+	0	Parent=Os07t0586500-02
Chr07	irgsp1_rep	CDS	23837912	23838145	.	+	0	Parent=Os07t0586500-02
Chr07	irgsp1_rep	three_prime_UTR	23838146	23838422	.	+	.	Parent=Os07t0586500-02
Chr07	irgsp1_rep	three_prime_UTR	23838511	23838693	.	+	.	Parent=Os07t0586500-02
Chr07	irgsp1_rep	three_prime_UTR	23838834	23838931	.	+	.	Parent=Os07t0586500-02
Chr07	irgsp1_rep	three_prime_UTR	23839411	23840102	.	+	.	Parent=Os07t0586500-02
Chr07	irgsp1_rep	mRNA	23833373	23840004	.	-	.	ID=Os07t0586550-00;Name=Os07t0586550-00;Locus_id=Os07g0586550;Note=Hypothetical protein.;Transcript_evidence=tplb0044i16 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0586550-00
Chr07	irgsp1_rep	five_prime_UTR	23839870	23840004	.	-	.	Parent=Os07t0586550-00
Chr07	irgsp1_rep	CDS	23839639	23839869	.	-	0	Parent=Os07t0586550-00
Chr07	irgsp1_rep	three_prime_UTR	23839415	23839638	.	-	.	Parent=Os07t0586550-00
Chr07	irgsp1_rep	three_prime_UTR	23838832	23838936	.	-	.	Parent=Os07t0586550-00
Chr07	irgsp1_rep	three_prime_UTR	23838499	23838696	.	-	.	Parent=Os07t0586550-00
Chr07	irgsp1_rep	three_prime_UTR	23838335	23838412	.	-	.	Parent=Os07t0586550-00
Chr07	irgsp1_rep	three_prime_UTR	23837910	23838145	.	-	.	Parent=Os07t0586550-00
Chr07	irgsp1_rep	three_prime_UTR	23837387	23837830	.	-	.	Parent=Os07t0586550-00
Chr07	irgsp1_rep	three_prime_UTR	23836450	23836549	.	-	.	Parent=Os07t0586550-00
Chr07	irgsp1_rep	three_prime_UTR	23835372	23835587	.	-	.	Parent=Os07t0586550-00
Chr07	irgsp1_rep	three_prime_UTR	23835160	23835243	.	-	.	Parent=Os07t0586550-00
Chr07	irgsp1_rep	three_prime_UTR	23833680	23833771	.	-	.	Parent=Os07t0586550-00
Chr07	irgsp1_rep	three_prime_UTR	23833373	23833566	.	-	.	Parent=Os07t0586550-00
Chr07	irgsp1_rep	mRNA	23840986	23841827	.	-	.	ID=Os07t0586600-01;Name=Os07t0586600-01;Locus_id=Os07g0586600;Note=Conserved hypothetical protein.;Transcript_evidence=AK287951 (DDBJ%2C Best hit);ORF_evidence=NP_001175279.1 (RefSeq);NIAS_FLcDNA=J075031D18;TENOR=Os07t0586600-01;KEGG=Os07t0586600-01
Chr07	irgsp1_rep	five_prime_UTR	23841765	23841827	.	-	.	Parent=Os07t0586600-01
Chr07	irgsp1_rep	CDS	23841186	23841764	.	-	0	Parent=Os07t0586600-01
Chr07	irgsp1_rep	three_prime_UTR	23840986	23841185	.	-	.	Parent=Os07t0586600-01
Chr07	irgsp1_rep	mRNA	23842574	23845455	.	-	.	ID=Os07t0586700-01;Name=Os07t0586700-01;Locus_id=Os07g0586700;Note=Similar to HRT transcription factor (Fragment).;Transcript_evidence=AK102792 (DDBJ%2C Best hit);ORF_evidence=F1DJZ9 (UniProt);NIAS_FLcDNA=J033107P15;Expression=AK102792;TENOR=Os07t0586700-01;KEGG=Os07t0586700-01
Chr07	irgsp1_rep	five_prime_UTR	23845373	23845455	.	-	.	Parent=Os07t0586700-01
Chr07	irgsp1_rep	CDS	23845283	23845372	.	-	0	Parent=Os07t0586700-01
Chr07	irgsp1_rep	CDS	23844735	23845109	.	-	0	Parent=Os07t0586700-01
Chr07	irgsp1_rep	CDS	23842785	23844188	.	-	0	Parent=Os07t0586700-01
Chr07	irgsp1_rep	three_prime_UTR	23842574	23842784	.	-	.	Parent=Os07t0586700-01
Chr07	irgsp1_rep	mRNA	23851371	23852411	.	-	.	ID=Os07t0586800-01;Name=Os07t0586800-01;Locus_id=Os07g0586800;Note=Similar to triacylglycerol lipase.;Transcript_evidence=AK287769 (DDBJ%2C Best hit);ORF_evidence=NP_001149039.1 (RefSeq);NIAS_FLcDNA=J065166D13;TENOR=Os07t0586800-01;KEGG=Os07t0586800-01
Chr07	irgsp1_rep	five_prime_UTR	23852347	23852411	.	-	.	Parent=Os07t0586800-01
Chr07	irgsp1_rep	CDS	23851585	23852346	.	-	0	Parent=Os07t0586800-01
Chr07	irgsp1_rep	three_prime_UTR	23851371	23851584	.	-	.	Parent=Os07t0586800-01
Chr07	irgsp1_rep	mRNA	23868417	23871087	.	+	.	ID=Os07t0586900-01;Name=Os07t0586900-01;Locus_id=Os07g0586900;RAP-DB Gene Symbol Synonym(s)=OsSHR1;RAP-DB Gene Name Synonym(s)=SHORTROOT1;CGSNL Gene Symbol=SHR1;CGSNL Gene Name=SHORT ROOT GENE 1;Oryzabase Gene Symbol Synonym(s)=OsSHR1%2C OsGRAS-38%2C OsGRAS38%2C GRAS-38%2C GRAS38%2C DLN189%2C OsDLN189;Oryzabase Gene Name Synonym(s)=rice SHORT  ROOT gene1%2C SHORT-ROOT 1%2C SHORTROOT1%2C SHORT-ROOT protein 1%2C GRAS protein 38%2C DLN repressor 189%2C DLN motif protein 189;Note=SHR transcription factor%2C Formation of root endodermis and leaf stomata%2C Regulation of the number of cortex cell layers in the root;Transcript_evidence=AK120959;ORF_evidence=Q8H2X8;InterPro=Transcription factor GRAS (IPR005202);NIAS_FLcDNA=J023039J21;Manual Curation=February 20%2C 2018;Literature_PMID=29127261,25352666,17446396,12974810;Oryzabase=3120;Expression=AK120959;TENOR=Os07t0586900-01;KEGG=Os07t0586900-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737) [stele cell]
Chr07	irgsp1_rep	five_prime_UTR	23868417	23868811	.	+	.	Parent=Os07t0586900-01
Chr07	irgsp1_rep	CDS	23868812	23870620	.	+	0	Parent=Os07t0586900-01
Chr07	irgsp1_rep	three_prime_UTR	23870621	23871087	.	+	.	Parent=Os07t0586900-01
Chr07	irgsp1_rep	mRNA	23884624	23887174	.	+	.	ID=Os07t0587000-01;Name=Os07t0587000-01;Locus_id=Os07g0587000;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK107187 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-124-H10;TENOR=Os07t0587000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	23884624	23885544	.	+	0	Parent=Os07t0587000-01
Chr07	irgsp1_rep	CDS	23886445	23886597	.	+	0	Parent=Os07t0587000-01
Chr07	irgsp1_rep	CDS	23886717	23886833	.	+	0	Parent=Os07t0587000-01
Chr07	irgsp1_rep	three_prime_UTR	23886834	23887174	.	+	.	Parent=Os07t0587000-01
Chr07	irgsp1_rep	mRNA	23888294	23891582	.	-	.	ID=Os07t0587100-01;Name=Os07t0587100-01;Locus_id=Os07g0587100;Note=Reticulon family protein.;Transcript_evidence=AK243436 (DDBJ%2C Best hit);ORF_evidence=NP_565102.1 (RefSeq);GO=Cellular Component: endoplasmic reticulum (GO:0005783);InterPro=Reticulon (IPR003388),Nucleotide-diphospho-sugar transferase (IPR005069);NIAS_FLcDNA=J100068C02;TENOR=Os07t0587100-01;KEGG=Os07t0587100-01
Chr07	irgsp1_rep	five_prime_UTR	23891511	23891582	.	-	.	Parent=Os07t0587100-01
Chr07	irgsp1_rep	CDS	23891319	23891510	.	-	0	Parent=Os07t0587100-01
Chr07	irgsp1_rep	CDS	23888420	23889508	.	-	0	Parent=Os07t0587100-01
Chr07	irgsp1_rep	three_prime_UTR	23888294	23888419	.	-	.	Parent=Os07t0587100-01
Chr07	irgsp1_rep	mRNA	23894231	23896552	.	-	.	ID=Os07t0587200-01;Name=Os07t0587200-01;Locus_id=Os07g0587200;Note=NPH3 domain containing protein.;Transcript_evidence=AK108192 (DDBJ%2C Best hit);ORF_evidence=B8B841 (UniProt);GO=Biological Process: response to light stimulus (GO:0009416),Molecular Function: signal transducer activity (GO:0004871);InterPro=NPH3 (IPR004249);NIAS_FLcDNA=002-140-C03;TENOR=Os07t0587200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	23896552	23896552	.	-	.	Parent=Os07t0587200-01
Chr07	irgsp1_rep	CDS	23896279	23896551	.	-	0	Parent=Os07t0587200-01
Chr07	irgsp1_rep	CDS	23894747	23895214	.	-	0	Parent=Os07t0587200-01
Chr07	irgsp1_rep	CDS	23894231	23894615	.	-	0	Parent=Os07t0587200-01
Chr07	irgsp1_rep	mRNA	23899073	23899642	.	-	.	ID=Os07t0587250-00;Name=Os07t0587250-00;Locus_id=Os07g0587250;Note=Hypothetical conserved gene.;Transcript_evidence=EU949232 (DDBJ);ORF_evidence=B9FY60 (UniProt);TENOR=Os07t0587250-00;KEGG=Os07t0587250-00
Chr07	irgsp1_rep	CDS	23899404	23899642	.	-	0	Parent=Os07t0587250-00
Chr07	irgsp1_rep	CDS	23899073	23899259	.	-	1	Parent=Os07t0587250-00
Chr07	irgsp1_rep	mRNA	23902874	23903531	.	-	.	ID=Os07t0587300-01;Name=Os07t0587300-01;Locus_id=Os07g0587300;Note=Hypothetical conserved gene.;Transcript_evidence=AK287835 (DDBJ%2C Best hit);ORF_evidence=NP_001175280.1 (RefSeq);NIAS_FLcDNA=J065190H03;TENOR=Os07t0587300-01;KEGG=Os07t0587300-01
Chr07	irgsp1_rep	five_prime_UTR	23903531	23903531	.	-	.	Parent=Os07t0587300-01
Chr07	irgsp1_rep	CDS	23903162	23903530	.	-	0	Parent=Os07t0587300-01
Chr07	irgsp1_rep	three_prime_UTR	23902874	23903161	.	-	.	Parent=Os07t0587300-01
Chr07	irgsp1_rep	mRNA	23904950	23908994	.	-	.	ID=Os07t0587400-01;Name=Os07t0587400-01;Locus_id=Os07g0587400;RAP-DB Gene Symbol Synonym(s)=ESP1%2C eRF1%2C ESP1/eRF1;RAP-DB Gene Name Synonym(s)=eukaryotic peptide chain release factor 1;CGSNL Gene Symbol=ESP1;CGSNL Gene Name=ENDOSPERM STORAGE PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=esp1(rsp1)%2C rsp1%2C esp1%2C OsESP1%2C ESP1/eRF1%2C eRF1%2C OseRF1;Oryzabase Gene Name Synonym(s)=endosperm storage protein1%2C endosperm storage protein 1%2C endosperm storage protein-1%2C eukaryotic peptide chain release factor 1;Note=Eukaryotic peptide chain release factor%2C Translation termination of cysteine-poor prolamines during seed development;Transcript_evidence=AK103740;ORF_evidence=Q6ZIQ1;GO=Biological Process: translational termination (GO:0006415),Molecular Function: translation release factor activity (GO:0003747),Cellular Component: cytoplasm (GO:0005737);InterPro=Peptide Chain Release Factor eRF1/aRF1%2C N-terminal (IPR024049),eRF1%2C domain 2 superfamily (IPR042226),50S ribosomal protein L30e-like (IPR029064),Peptide chain release factor eRF1/aRF1 (IPR004403),eRF1 domain 1/Pelota-like (IPR005140),eRF1 domain 2 (IPR005141),eRF1 domain 3 (IPR005142);NIAS_FLcDNA=J033138K20;Manual Curation=June 8%2C 2020;Literature_PMID=30824055;Oryzabase=819;Expression=AK103740;TENOR=Os07t0587400-01;KEGG=Os07t0587400-01
Chr07	irgsp1_rep	five_prime_UTR	23908887	23908994	.	-	.	Parent=Os07t0587400-01
Chr07	irgsp1_rep	five_prime_UTR	23906746	23906773	.	-	.	Parent=Os07t0587400-01
Chr07	irgsp1_rep	CDS	23905432	23906745	.	-	0	Parent=Os07t0587400-01
Chr07	irgsp1_rep	three_prime_UTR	23905332	23905431	.	-	.	Parent=Os07t0587400-01
Chr07	irgsp1_rep	three_prime_UTR	23904950	23905238	.	-	.	Parent=Os07t0587400-01
Chr07	irgsp1_rep	mRNA	23904950	23906228	.	-	.	ID=Os07t0587400-02;Name=Os07t0587400-02;Locus_id=Os07g0587400;CGSNL Gene Symbol=ESP1;CGSNL Gene Name=ENDOSPERM STORAGE PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=esp1(rsp1)%2C rsp1%2C esp1%2C OsESP1%2C ESP1/eRF1%2C eRF1%2C OseRF1;Oryzabase Gene Name Synonym(s)=endosperm storage protein1%2C endosperm storage protein 1%2C endosperm storage protein-1%2C eukaryotic peptide chain release factor 1;Note=Similar to eukaryotic peptide chain release factor subunit 1-1.;Transcript_evidence=AK065768 (DDBJ%2C Best hit);ORF_evidence=NP_001151538.1 (RefSeq);GO=Biological Process: translational termination (GO:0006415),Cellular Component: cytoplasm (GO:0005737),Molecular Function: translation release factor activity%2C codon specific (GO:0016149);InterPro=Peptide chain release factor eRF1/aRF1 (IPR004403),eRF1 domain 2 (IPR005141),eRF1 domain 3 (IPR005142);NIAS_FLcDNA=J013043M02;Oryzabase=819;Expression=AK065768;TENOR=Os07t0587400-02;KEGG=Os07t0587400-02
Chr07	irgsp1_rep	five_prime_UTR	23906227	23906228	.	-	.	Parent=Os07t0587400-02
Chr07	irgsp1_rep	CDS	23905432	23906226	.	-	0	Parent=Os07t0587400-02
Chr07	irgsp1_rep	three_prime_UTR	23905332	23905431	.	-	.	Parent=Os07t0587400-02
Chr07	irgsp1_rep	three_prime_UTR	23904950	23905238	.	-	.	Parent=Os07t0587400-02
Chr07	irgsp1_rep	mRNA	23905381	23906779	.	+	.	ID=Os07t0587450-00;Name=Os07t0587450-00;Locus_id=Os07g0587450;Note=Non-protein coding transcript.;Transcript_evidence=tplb0034d14 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os07t0587450-00
Chr07	irgsp1_rep	exon	23905381	23906779	.	+	.	Parent=Os07t0587450-00
Chr07	irgsp1_rep	mRNA	23911800	23913680	.	+	.	ID=Os07t0587500-01;Name=Os07t0587500-01;Locus_id=Os07g0587500;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK242730 (DDBJ%2C Best hit);ORF_evidence=NP_001148265.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J090047G12;TENOR=Os07t0587500-01;KEGG=Os07t0587500-01
Chr07	irgsp1_rep	five_prime_UTR	23911800	23911998	.	+	.	Parent=Os07t0587500-01
Chr07	irgsp1_rep	CDS	23911999	23913003	.	+	0	Parent=Os07t0587500-01
Chr07	irgsp1_rep	CDS	23913107	23913190	.	+	0	Parent=Os07t0587500-01
Chr07	irgsp1_rep	three_prime_UTR	23913191	23913680	.	+	.	Parent=Os07t0587500-01
Chr07	irgsp1_rep	mRNA	23925954	23931219	.	+	.	ID=Os07t0588000-01;Name=Os07t0588000-01;Locus_id=Os07g0588000;Note=Interferon-related developmental regulator domain containing protein.;Transcript_evidence=AK099482 (DDBJ%2C Best hit);ORF_evidence=B4FQN7 (UniProt);InterPro=Interferon-related developmental regulator%2C N-terminal (IPR007701);NIAS_FLcDNA=J013025G13;Expression=AK099482;TENOR=Os07t0588000-01;KEGG=Os07t0588000-01
Chr07	irgsp1_rep	five_prime_UTR	23925954	23926402	.	+	.	Parent=Os07t0588000-01
Chr07	irgsp1_rep	CDS	23926403	23926412	.	+	0	Parent=Os07t0588000-01
Chr07	irgsp1_rep	CDS	23926502	23926682	.	+	2	Parent=Os07t0588000-01
Chr07	irgsp1_rep	CDS	23927894	23927974	.	+	1	Parent=Os07t0588000-01
Chr07	irgsp1_rep	CDS	23928223	23928305	.	+	1	Parent=Os07t0588000-01
Chr07	irgsp1_rep	CDS	23928396	23928511	.	+	2	Parent=Os07t0588000-01
Chr07	irgsp1_rep	CDS	23928595	23928705	.	+	0	Parent=Os07t0588000-01
Chr07	irgsp1_rep	CDS	23928812	23928924	.	+	0	Parent=Os07t0588000-01
Chr07	irgsp1_rep	CDS	23929021	23929327	.	+	1	Parent=Os07t0588000-01
Chr07	irgsp1_rep	CDS	23929414	23929497	.	+	0	Parent=Os07t0588000-01
Chr07	irgsp1_rep	CDS	23929582	23929632	.	+	0	Parent=Os07t0588000-01
Chr07	irgsp1_rep	CDS	23929723	23929794	.	+	0	Parent=Os07t0588000-01
Chr07	irgsp1_rep	CDS	23930403	23930471	.	+	0	Parent=Os07t0588000-01
Chr07	irgsp1_rep	CDS	23930899	23930937	.	+	0	Parent=Os07t0588000-01
Chr07	irgsp1_rep	three_prime_UTR	23930938	23931219	.	+	.	Parent=Os07t0588000-01
Chr07	irgsp1_rep	mRNA	23933038	23935489	.	-	.	ID=Os07t0588100-00;Name=Os07t0588100-00;Locus_id=Os07g0588100;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=BT084276 (DDBJ);ORF_evidence=Q6ZIP5 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os07t0588100-00
Chr07	irgsp1_rep	CDS	23933063	23935489	.	-	0	Parent=Os07t0588100-00
Chr07	irgsp1_rep	three_prime_UTR	23933038	23933062	.	-	.	Parent=Os07t0588100-00
Chr07	irgsp1_rep	mRNA	23944541	23950428	.	+	.	ID=Os07t0588200-01;Name=Os07t0588200-01;Locus_id=Os07g0588200;Oryzabase Gene Symbol Synonym(s)=OsFH13%2C FH13;Oryzabase Gene Name Synonym(s)=formin homology 13%2C forming family protein 13%2C FH2 protein 13%2C FH2 domain protein 13;Note=Actin-binding FH2 domain containing protein.;Transcript_evidence=AK120511 (DDBJ%2C Best hit);ORF_evidence=Q0D519 (UniProt);GO=Biological Process: cellular component organization (GO:0016043),Biological Process: actin cytoskeleton organization (GO:0030036),Molecular Function: actin binding (GO:0003779);InterPro=Actin-binding FH2/DRF autoregulatory (IPR003104),Actin-binding FH2 (IPR015425);NIAS_FLcDNA=J013123L23;Oryzabase=21783;Expression=AK120511;TENOR=Os07t0588200-01;KEGG=Os07t0588200-01
Chr07	irgsp1_rep	five_prime_UTR	23944541	23944711	.	+	.	Parent=Os07t0588200-01
Chr07	irgsp1_rep	CDS	23944712	23945802	.	+	0	Parent=Os07t0588200-01
Chr07	irgsp1_rep	CDS	23945897	23946096	.	+	1	Parent=Os07t0588200-01
Chr07	irgsp1_rep	CDS	23948821	23949062	.	+	2	Parent=Os07t0588200-01
Chr07	irgsp1_rep	CDS	23949351	23950142	.	+	0	Parent=Os07t0588200-01
Chr07	irgsp1_rep	three_prime_UTR	23950143	23950428	.	+	.	Parent=Os07t0588200-01
Chr07	irgsp1_rep	mRNA	23949504	23950356	.	+	.	ID=Os07t0588200-02;Name=Os07t0588200-02;Locus_id=Os07g0588200;Oryzabase Gene Symbol Synonym(s)=OsFH13%2C FH13;Oryzabase Gene Name Synonym(s)=formin homology 13%2C forming family protein 13%2C FH2 protein 13%2C FH2 domain protein 13;Note=Similar to Formin-like protein 13.;Transcript_evidence=AK059131 (DDBJ%2C Best hit);ORF_evidence=Q0D519 (UniProt);InterPro=Actin-binding FH2 (IPR015425);NIAS_FLcDNA=001-022-G08;Oryzabase=21783;Expression=AK059131;TENOR=Os07t0588200-02;KEGG=Os07t0588200-02
Chr07	irgsp1_rep	CDS	23949504	23949866	.	+	0	Parent=Os07t0588200-02
Chr07	irgsp1_rep	CDS	23949930	23950142	.	+	0	Parent=Os07t0588200-02
Chr07	irgsp1_rep	three_prime_UTR	23950143	23950356	.	+	.	Parent=Os07t0588200-02
Chr07	irgsp1_rep	mRNA	23953405	23955773	.	+	.	ID=Os07t0588300-00;Name=Os07t0588300-00;Locus_id=Os07g0588300;Note=Hypothetical conserved gene.;Transcript_evidence=BT062538 (DDBJ);ORF_evidence=Q6ZIP2 (UniProt);InterPro=Protein of unknown function DUF936%2C plant (IPR010341);TENOR=Os07t0588300-00;KEGG=Os07t0588300-00
Chr07	irgsp1_rep	CDS	23953405	23954229	.	+	0	Parent=Os07t0588300-00
Chr07	irgsp1_rep	CDS	23954330	23954578	.	+	0	Parent=Os07t0588300-00
Chr07	irgsp1_rep	CDS	23954684	23954775	.	+	0	Parent=Os07t0588300-00
Chr07	irgsp1_rep	CDS	23954993	23955773	.	+	1	Parent=Os07t0588300-00
Chr07	irgsp1_rep	mRNA	23956804	23958405	.	-	.	ID=Os07t0588400-01;Name=Os07t0588400-01;Locus_id=Os07g0588400;RAP-DB Gene Symbol Synonym(s)=OsRSL6;RAP-DB Gene Name Synonym(s)=Root Hair Defective-Six Like 6;Oryzabase Gene Symbol Synonym(s)=OsbHLH128%2C bHLH128%2C OsRSL6%2C RSL6%2C DLN190%2C OsDLN190;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 128%2C ROOT HAIR DEFECTIVE-SIX LIKE 6%2C DLN repressor 190%2C DLN motif protein 190;Note=Root Hair Defective-Six Like (RSL) Class II family of transcription factor%2C Regulation of root hair development;Transcript_evidence=XM_015790741;ORF_evidence=A0A0P0X817;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Helix-loop-helix DNA-binding domain superfamily (IPR036638),Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);Manual Curation=September 2%2C 2019;Literature_PMID=30545904,27716929;Oryzabase=15406;TENOR=Os07t0588400-00;Subcellular location=nucleus (GO:0005634)
Chr07	irgsp1_rep	five_prime_UTR	23958317	23958405	.	-	.	Parent=Os07t0588400-01
Chr07	irgsp1_rep	CDS	23957864	23958316	.	-	0	Parent=Os07t0588400-01
Chr07	irgsp1_rep	CDS	23957564	23957767	.	-	0	Parent=Os07t0588400-01
Chr07	irgsp1_rep	CDS	23957412	23957477	.	-	0	Parent=Os07t0588400-01
Chr07	irgsp1_rep	CDS	23957230	23957295	.	-	0	Parent=Os07t0588400-01
Chr07	irgsp1_rep	CDS	23957016	23957114	.	-	0	Parent=Os07t0588400-01
Chr07	irgsp1_rep	three_prime_UTR	23956804	23957015	.	-	.	Parent=Os07t0588400-01
Chr07	irgsp1_rep	mRNA	23965804	23970059	.	+	.	ID=Os07t0588500-00;Name=Os07t0588500-00;Locus_id=Os07g0588500;Oryzabase Gene Symbol Synonym(s)=OsWD40-145;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=FP094417 (DDBJ);ORF_evidence=B6UH61 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);Oryzabase=10826;TENOR=Os07t0588500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	23965804	23965882	.	+	.	Parent=Os07t0588500-00
Chr07	irgsp1_rep	CDS	23965883	23966047	.	+	0	Parent=Os07t0588500-00
Chr07	irgsp1_rep	CDS	23966251	23966381	.	+	0	Parent=Os07t0588500-00
Chr07	irgsp1_rep	CDS	23966726	23966808	.	+	1	Parent=Os07t0588500-00
Chr07	irgsp1_rep	CDS	23967948	23968217	.	+	2	Parent=Os07t0588500-00
Chr07	irgsp1_rep	CDS	23969183	23969258	.	+	2	Parent=Os07t0588500-00
Chr07	irgsp1_rep	CDS	23969409	23969489	.	+	1	Parent=Os07t0588500-00
Chr07	irgsp1_rep	CDS	23969568	23969646	.	+	1	Parent=Os07t0588500-00
Chr07	irgsp1_rep	CDS	23969754	23969854	.	+	0	Parent=Os07t0588500-00
Chr07	irgsp1_rep	CDS	23969951	23970059	.	+	1	Parent=Os07t0588500-00
Chr07	irgsp1_rep	mRNA	23973340	23974261	.	+	.	ID=Os07t0588600-01;Name=Os07t0588600-01;Locus_id=Os07g0588600;CGSNL Gene Symbol=DLN191;CGSNL Gene Name=DLN REPRESSOR 191;Oryzabase Gene Symbol Synonym(s)=OsDLN191;Oryzabase Gene Name Synonym(s)=DLN repressor 191%2C DLN motif protein 191;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK108320 (DDBJ%2C Best hit);ORF_evidence=A2YN72 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=002-141-H01;Oryzabase=23217;Expression=AK108320;TENOR=Os07t0588600-01;KEGG=Os07t0588600-01
Chr07	irgsp1_rep	five_prime_UTR	23973340	23973457	.	+	.	Parent=Os07t0588600-01
Chr07	irgsp1_rep	CDS	23973458	23974120	.	+	0	Parent=Os07t0588600-01
Chr07	irgsp1_rep	three_prime_UTR	23974121	23974261	.	+	.	Parent=Os07t0588600-01
Chr07	irgsp1_rep	mRNA	23980540	23981251	.	+	.	ID=Os07t0588700-01;Name=Os07t0588700-01;Locus_id=Os07g0588700;RAP-DB Gene Symbol Synonym(s)=ZFP245;RAP-DB Gene Name Synonym(s)=zinc finger protein ZFP245;CGSNL Gene Symbol=ZFP245;CGSNL Gene Name=ZINC FINGER PROTEIN 245;Oryzabase Gene Symbol Synonym(s)=OsZFP245%2C DLN192%2C OsDLN192;Oryzabase Gene Name Synonym(s)=zinc finger protein ZFP245%2C DLN repressor 192%2C DLN motif protein 192;Note=C2H2-type zinc finger protein%2C Cold and drought tolerance;Transcript_evidence=AY395294;ORF_evidence=Q84Z14;GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Zinc finger C2H2 superfamily (IPR036236),Zinc finger C2H2-type (IPR013087);Manual Curation=October 16%2C 2020;Literature_PMID=19751706,16147864;Oryzabase=8645;Expression=AY395294;TENOR=Os07t0588700-00;KEGG=Os07t0588700-00;Subcellular location=nucleus (GO:0005634)
Chr07	irgsp1_rep	five_prime_UTR	23980540	23980556	.	+	.	Parent=Os07t0588700-01
Chr07	irgsp1_rep	CDS	23980557	23981237	.	+	0	Parent=Os07t0588700-01
Chr07	irgsp1_rep	three_prime_UTR	23981238	23981251	.	+	.	Parent=Os07t0588700-01
Chr07	irgsp1_rep	mRNA	23985373	23989943	.	+	.	ID=Os07t0588800-01;Name=Os07t0588800-01;Locus_id=Os07g0588800;Note=Protein of unknown function DUF2419 domain containing protein.;Transcript_evidence=AK103183 (DDBJ%2C Best hit);ORF_evidence=A2YN74 (UniProt);InterPro=Protein of unknown function DUF2419 (IPR019438);NIAS_FLcDNA=J033121K01;Expression=AK103183;TENOR=Os07t0588800-01;KEGG=Os07t0588800-01
Chr07	irgsp1_rep	five_prime_UTR	23985373	23985441	.	+	.	Parent=Os07t0588800-01
Chr07	irgsp1_rep	CDS	23985442	23985511	.	+	0	Parent=Os07t0588800-01
Chr07	irgsp1_rep	CDS	23985986	23986129	.	+	2	Parent=Os07t0588800-01
Chr07	irgsp1_rep	CDS	23986468	23986566	.	+	2	Parent=Os07t0588800-01
Chr07	irgsp1_rep	CDS	23987002	23987078	.	+	2	Parent=Os07t0588800-01
Chr07	irgsp1_rep	CDS	23987393	23987501	.	+	0	Parent=Os07t0588800-01
Chr07	irgsp1_rep	CDS	23988553	23988881	.	+	2	Parent=Os07t0588800-01
Chr07	irgsp1_rep	CDS	23989418	23989510	.	+	0	Parent=Os07t0588800-01
Chr07	irgsp1_rep	three_prime_UTR	23989511	23989943	.	+	.	Parent=Os07t0588800-01
Chr07	irgsp1_rep	mRNA	23985563	23989855	.	+	.	ID=Os07t0588800-02;Name=Os07t0588800-02;Locus_id=Os07g0588800;Note=Similar to predicted protein.;Transcript_evidence=AK070635 (DDBJ%2C Best hit);ORF_evidence=A2YN74 (UniProt);InterPro=Protein of unknown function DUF2419 (IPR019438);NIAS_FLcDNA=J023058H18;Expression=AK070635;TENOR=Os07t0588800-02;KEGG=Os07t0588800-02
Chr07	irgsp1_rep	five_prime_UTR	23985563	23985894	.	+	.	Parent=Os07t0588800-02
Chr07	irgsp1_rep	CDS	23985895	23986129	.	+	0	Parent=Os07t0588800-02
Chr07	irgsp1_rep	CDS	23986468	23986566	.	+	2	Parent=Os07t0588800-02
Chr07	irgsp1_rep	CDS	23987002	23987078	.	+	2	Parent=Os07t0588800-02
Chr07	irgsp1_rep	CDS	23987393	23987501	.	+	0	Parent=Os07t0588800-02
Chr07	irgsp1_rep	CDS	23988553	23988881	.	+	2	Parent=Os07t0588800-02
Chr07	irgsp1_rep	CDS	23989418	23989510	.	+	0	Parent=Os07t0588800-02
Chr07	irgsp1_rep	three_prime_UTR	23989511	23989855	.	+	.	Parent=Os07t0588800-02
Chr07	irgsp1_rep	mRNA	23991408	23992325	.	+	.	ID=Os07t0588900-01;Name=Os07t0588900-01;Locus_id=Os07g0588900;Note=Glycosyl transferase%2C family 43 protein.;Transcript_evidence=AK067186 (DDBJ%2C Best hit);ORF_evidence=Q7XHJ7 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity (GO:0015018);InterPro=Glycosyl transferase%2C family 43 (IPR005027);NIAS_FLcDNA=J013094J18;Expression=AK067186;TENOR=Os07t0588900-01;KEGG=Os07t0588900-01
Chr07	irgsp1_rep	five_prime_UTR	23991408	23991658	.	+	.	Parent=Os07t0588900-01
Chr07	irgsp1_rep	CDS	23991659	23992150	.	+	0	Parent=Os07t0588900-01
Chr07	irgsp1_rep	three_prime_UTR	23992151	23992325	.	+	.	Parent=Os07t0588900-01
Chr07	irgsp1_rep	mRNA	23996515	23997565	.	+	.	ID=Os07t0589000-01;Name=Os07t0589000-01;Locus_id=Os07g0589000;Note=Lateral organ boundaries%2C LOB domain containing protein.;Transcript_evidence=AK069813 (DDBJ%2C Best hit);ORF_evidence=NP_001152326.1 (RefSeq);InterPro=Lateral organ boundaries%2C LOB (IPR004883);NIAS_FLcDNA=J023030F23;Expression=AK069813;TENOR=Os07t0589000-01;KEGG=Os07t0589000-01
Chr07	irgsp1_rep	five_prime_UTR	23996515	23996558	.	+	.	Parent=Os07t0589000-01
Chr07	irgsp1_rep	CDS	23996559	23996742	.	+	0	Parent=Os07t0589000-01
Chr07	irgsp1_rep	CDS	23996833	23997329	.	+	2	Parent=Os07t0589000-01
Chr07	irgsp1_rep	three_prime_UTR	23997330	23997565	.	+	.	Parent=Os07t0589000-01
Chr07	irgsp1_rep	mRNA	24014183	24016352	.	+	.	ID=Os07t0589200-00;Name=Os07t0589200-00;Locus_id=Os07g0589200;CGSNL Gene Symbol=GRAS37;CGSNL Gene Name=GRAS PROTEIN 37;Oryzabase Gene Symbol Synonym(s)=OsGRAS-37%2C OsGRAS37%2C GRAS-37;Oryzabase Gene Name Synonym(s)=GRAS protein 37;Note=GRAS transcription factor domain containing protein.;Transcript_evidence=AK362740 (DDBJ);ORF_evidence=NP_001148176.1 (RefSeq);InterPro=Transcription factor GRAS (IPR005202);Oryzabase=22797;TENOR=Os07t0589200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	24014183	24014757	.	+	.	Parent=Os07t0589200-00
Chr07	irgsp1_rep	CDS	24014758	24016179	.	+	0	Parent=Os07t0589200-00
Chr07	irgsp1_rep	three_prime_UTR	24016180	24016352	.	+	.	Parent=Os07t0589200-00
Chr07	irgsp1_rep	mRNA	24020383	24025049	.	+	.	ID=Os07t0589400-01;Name=Os07t0589400-01;Locus_id=Os07g0589400;Oryzabase Gene Symbol Synonym(s)=OsWD40-146;Note=Similar to Set1 complex component swd2.;Transcript_evidence=AK072501 (DDBJ%2C Best hit),AK104617 (DDBJ%2C Best hit),AK104756 (DDBJ%2C Best hit);ORF_evidence=B4F8A5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J023127G15,006-309-F09,001-038-G05;Oryzabase=10827;TENOR=Os07t0589400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	24020383	24020654	.	+	.	Parent=Os07t0589400-01
Chr07	irgsp1_rep	five_prime_UTR	24020852	24020877	.	+	.	Parent=Os07t0589400-01
Chr07	irgsp1_rep	CDS	24020878	24020946	.	+	0	Parent=Os07t0589400-01
Chr07	irgsp1_rep	CDS	24022498	24022601	.	+	0	Parent=Os07t0589400-01
Chr07	irgsp1_rep	CDS	24023196	24023296	.	+	1	Parent=Os07t0589400-01
Chr07	irgsp1_rep	CDS	24023372	24023438	.	+	2	Parent=Os07t0589400-01
Chr07	irgsp1_rep	CDS	24023526	24023625	.	+	1	Parent=Os07t0589400-01
Chr07	irgsp1_rep	CDS	24024050	24024163	.	+	0	Parent=Os07t0589400-01
Chr07	irgsp1_rep	CDS	24024229	24024366	.	+	0	Parent=Os07t0589400-01
Chr07	irgsp1_rep	CDS	24024445	24024529	.	+	0	Parent=Os07t0589400-01
Chr07	irgsp1_rep	CDS	24024609	24024655	.	+	2	Parent=Os07t0589400-01
Chr07	irgsp1_rep	CDS	24024796	24024939	.	+	0	Parent=Os07t0589400-01
Chr07	irgsp1_rep	three_prime_UTR	24024940	24025049	.	+	.	Parent=Os07t0589400-01
Chr07	irgsp1_rep	mRNA	24024227	24025086	.	+	.	ID=Os07t0589400-02;Name=Os07t0589400-02;Locus_id=Os07g0589400;Oryzabase Gene Symbol Synonym(s)=OsWD40-146;Note=Similar to Set1 complex component swd2.;Transcript_evidence=AK058328 (DDBJ%2C Best hit);ORF_evidence=B4F8A5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=001-014-C01;Oryzabase=10827;TENOR=Os07t0589400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	24024227	24024365	.	+	.	Parent=Os07t0589400-02
Chr07	irgsp1_rep	CDS	24024366	24024366	.	+	0	Parent=Os07t0589400-02
Chr07	irgsp1_rep	CDS	24024449	24024529	.	+	2	Parent=Os07t0589400-02
Chr07	irgsp1_rep	CDS	24024609	24024655	.	+	2	Parent=Os07t0589400-02
Chr07	irgsp1_rep	CDS	24024796	24024939	.	+	0	Parent=Os07t0589400-02
Chr07	irgsp1_rep	three_prime_UTR	24024940	24025086	.	+	.	Parent=Os07t0589400-02
Chr07	irgsp1_rep	mRNA	24032921	24033240	.	+	.	ID=Os07t0589532-00;Name=Os07t0589532-00;Locus_id=Os07g0589532;Note=Non-protein coding transcript.;Transcript_evidence=CT836159 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os07t0589532-00
Chr07	irgsp1_rep	exon	24032921	24033240	.	+	.	Parent=Os07t0589532-00
Chr07	irgsp1_rep	mRNA	24034795	24035858	.	-	.	ID=Os07t0589600-00;Name=Os07t0589600-00;Locus_id=Os07g0589600;Note=Conserved hypothetical protein.;Transcript_evidence=AK375672 (DDBJ);ORF_evidence=Q7EZ23 (UniProt);TENOR=Os07t0589600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	24035824	24035858	.	-	.	Parent=Os07t0589600-00
Chr07	irgsp1_rep	CDS	24034942	24035823	.	-	0	Parent=Os07t0589600-00
Chr07	irgsp1_rep	three_prime_UTR	24034795	24034941	.	-	.	Parent=Os07t0589600-00
Chr07	irgsp1_rep	mRNA	24055001	24055763	.	-	.	ID=Os07t0590000-01;Name=Os07t0590000-01;Locus_id=Os07g0590000;Note=Hypothetical protein.;Transcript_evidence=AK111301 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-181-B04;Expression=AK111301;TENOR=Os07t0590000-01;KEGG=Os07t0590000-01
Chr07	irgsp1_rep	five_prime_UTR	24055538	24055763	.	-	.	Parent=Os07t0590000-01
Chr07	irgsp1_rep	CDS	24055172	24055537	.	-	0	Parent=Os07t0590000-01
Chr07	irgsp1_rep	three_prime_UTR	24055001	24055171	.	-	.	Parent=Os07t0590000-01
Chr07	irgsp1_rep	mRNA	24055052	24055945	.	+	.	ID=Os07t0590100-01;Name=Os07t0590100-01;Locus_id=Os07g0590100;CGSNL Gene Symbol=DLN193;CGSNL Gene Name=DLN REPRESSOR 193;Oryzabase Gene Symbol Synonym(s)=OsDLN193;Oryzabase Gene Name Synonym(s)=DLN repressor 193%2C DLN motif protein 193;Note=Zinc finger%2C C2H2 domain containing protein.;Transcript_evidence=AK120003 (DDBJ%2C Best hit);ORF_evidence=B8B810 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=002-184-H11;Oryzabase=23218;TENOR=Os07t0590100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	24055052	24055110	.	+	.	Parent=Os07t0590100-01
Chr07	irgsp1_rep	CDS	24055111	24055719	.	+	0	Parent=Os07t0590100-01
Chr07	irgsp1_rep	three_prime_UTR	24055720	24055945	.	+	.	Parent=Os07t0590100-01
Chr07	irgsp1_rep	mRNA	24066085	24067613	.	-	.	ID=Os07t0590500-00;Name=Os07t0590500-00;Locus_id=Os07g0590500;Note=Hypothetical conserved gene.;Transcript_evidence=EU968482 (DDBJ);ORF_evidence=Q01L34 (UniProt);GO=Cellular Component: extracellular space (GO:0005615);InterPro=Allergen Ole e 1%2C conserved site (IPR006040),Pollen Ole e 1 allergen/extensin (IPR006041);TENOR=Os07t0590500-00;KEGG=Os07t0590500-00
Chr07	irgsp1_rep	CDS	24067168	24067613	.	-	0	Parent=Os07t0590500-00
Chr07	irgsp1_rep	CDS	24066085	24066229	.	-	1	Parent=Os07t0590500-00
Chr07	irgsp1_rep	mRNA	24071176	24073668	.	+	.	ID=Os07t0590600-00;Name=Os07t0590600-00;Locus_id=Os07g0590600;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK359872 (DDBJ);ORF_evidence=NP_001060154.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os07t0590600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	24071176	24071180	.	+	.	Parent=Os07t0590600-00
Chr07	irgsp1_rep	CDS	24071181	24073535	.	+	0	Parent=Os07t0590600-00
Chr07	irgsp1_rep	three_prime_UTR	24073536	24073668	.	+	.	Parent=Os07t0590600-00
Chr07	irgsp1_rep	mRNA	24078257	24079597	.	-	.	ID=Os07t0590700-01;Name=Os07t0590700-01;Locus_id=Os07g0590700;CGSNL Gene Symbol=AGP13;CGSNL Gene Name=ARABINOGALACTAN PROTEIN 13;Oryzabase Gene Symbol Synonym(s)=OsAGP13;Oryzabase Gene Name Synonym(s)=Arabinogalactan protein 13;Note=Similar to transcriptional regulatory protein algP.;Transcript_evidence=AK062359 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=001-101-H03;Oryzabase=11306;Expression=AK062359;TENOR=Os07t0590700-01;KEGG=Os07t0590700-01
Chr07	irgsp1_rep	CDS	24079379	24079597	.	-	0	Parent=Os07t0590700-01
Chr07	irgsp1_rep	CDS	24078596	24078676	.	-	0	Parent=Os07t0590700-01
Chr07	irgsp1_rep	three_prime_UTR	24078257	24078595	.	-	.	Parent=Os07t0590700-01
Chr07	irgsp1_rep	mRNA	24087353	24089505	.	-	.	ID=Os07t0591100-01;Name=Os07t0591100-01;Locus_id=Os07g0591100;Note=Protein of unknown function DUF620 family protein.;Transcript_evidence=AK242156 (DDBJ%2C Best hit);ORF_evidence=Q9SFZ0 (UniProt);InterPro=Protein of unknown function DUF620 (IPR006873);NIAS_FLcDNA=J075155A07;TENOR=Os07t0591100-01;KEGG=Os07t0591100-01
Chr07	irgsp1_rep	five_prime_UTR	24089490	24089505	.	-	.	Parent=Os07t0591100-01
Chr07	irgsp1_rep	CDS	24088947	24089489	.	-	0	Parent=Os07t0591100-01
Chr07	irgsp1_rep	CDS	24088494	24088853	.	-	0	Parent=Os07t0591100-01
Chr07	irgsp1_rep	CDS	24087743	24088396	.	-	0	Parent=Os07t0591100-01
Chr07	irgsp1_rep	three_prime_UTR	24087353	24087742	.	-	.	Parent=Os07t0591100-01
Chr07	irgsp1_rep	mRNA	24087891	24088589	.	+	.	ID=Os07t0591202-00;Name=Os07t0591202-00;Locus_id=Os07g0591202;Note=Hypothetical gene.;Transcript_evidence=BT017174 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0591202-00
Chr07	irgsp1_rep	five_prime_UTR	24087891	24087892	.	+	.	Parent=Os07t0591202-00
Chr07	irgsp1_rep	CDS	24087893	24088403	.	+	0	Parent=Os07t0591202-00
Chr07	irgsp1_rep	CDS	24088500	24088589	.	+	2	Parent=Os07t0591202-00
Chr07	irgsp1_rep	mRNA	24097088	24099020	.	-	.	ID=Os07t0591300-00;Name=Os07t0591300-00;Locus_id=Os07g0591300;Oryzabase Gene Symbol Synonym(s)=Os_F0764;Note=Hypothetical conserved gene.;Transcript_evidence=tplb0012n15 (Wheat FLcDNA);ORF_evidence=NP_001060157.2 (RefSeq);Oryzabase=17518;TENOR=Os07t0591300-00;KEGG=Os07t0591300-00
Chr07	irgsp1_rep	five_prime_UTR	24098799	24099020	.	-	.	Parent=Os07t0591300-00
Chr07	irgsp1_rep	CDS	24098163	24098798	.	-	0	Parent=Os07t0591300-00
Chr07	irgsp1_rep	three_prime_UTR	24097830	24098162	.	-	.	Parent=Os07t0591300-00
Chr07	irgsp1_rep	three_prime_UTR	24097289	24097558	.	-	.	Parent=Os07t0591300-00
Chr07	irgsp1_rep	three_prime_UTR	24097088	24097196	.	-	.	Parent=Os07t0591300-00
Chr07	irgsp1_rep	mRNA	24097287	24098688	.	+	.	ID=Os07t0591350-00;Name=Os07t0591350-00;Locus_id=Os07g0591350;Note=Hypothetical protein.;Transcript_evidence=tplb0061a21 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0591350-00
Chr07	irgsp1_rep	five_prime_UTR	24097287	24097576	.	+	.	Parent=Os07t0591350-00
Chr07	irgsp1_rep	five_prime_UTR	24097846	24098201	.	+	.	Parent=Os07t0591350-00
Chr07	irgsp1_rep	CDS	24098202	24098663	.	+	0	Parent=Os07t0591350-00
Chr07	irgsp1_rep	three_prime_UTR	24098664	24098688	.	+	.	Parent=Os07t0591350-00
Chr07	irgsp1_rep	mRNA	24100489	24102219	.	+	.	ID=Os07t0591400-01;Name=Os07t0591400-01;Locus_id=Os07g0591400;Note=Conserved hypothetical protein.;Transcript_evidence=AK288685 (DDBJ%2C Best hit);ORF_evidence=Q6ZLG9 (UniProt);NIAS_FLcDNA=J090060A01;TENOR=Os07t0591400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	24100489	24101319	.	+	.	Parent=Os07t0591400-01
Chr07	irgsp1_rep	CDS	24101320	24101715	.	+	0	Parent=Os07t0591400-01
Chr07	irgsp1_rep	three_prime_UTR	24101716	24102219	.	+	.	Parent=Os07t0591400-01
Chr07	irgsp1_rep	mRNA	24115634	24116647	.	+	.	ID=Os07t0591700-01;Name=Os07t0591700-01;Locus_id=Os07g0591700;Note=Conserved hypothetical protein.;Transcript_evidence=AK105325 (DDBJ%2C Best hit);ORF_evidence=B8B811 (UniProt);NIAS_FLcDNA=001-117-H09;Expression=AK105325;TENOR=Os07t0591700-01;KEGG=Os07t0591700-01
Chr07	irgsp1_rep	five_prime_UTR	24115634	24115678	.	+	.	Parent=Os07t0591700-01
Chr07	irgsp1_rep	CDS	24115679	24115717	.	+	0	Parent=Os07t0591700-01
Chr07	irgsp1_rep	CDS	24115835	24116242	.	+	0	Parent=Os07t0591700-01
Chr07	irgsp1_rep	CDS	24116342	24116377	.	+	0	Parent=Os07t0591700-01
Chr07	irgsp1_rep	three_prime_UTR	24116378	24116647	.	+	.	Parent=Os07t0591700-01
Chr07	irgsp1_rep	mRNA	24118352	24120813	.	+	.	ID=Os07t0591800-01;Name=Os07t0591800-01;Locus_id=Os07g0591800;Note=Conserved hypothetical protein.;Transcript_evidence=AK106703 (DDBJ%2C Best hit);ORF_evidence=B9G7P7 (UniProt);NIAS_FLcDNA=002-114-E06;TENOR=Os07t0591800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	24118352	24118374	.	+	.	Parent=Os07t0591800-01
Chr07	irgsp1_rep	CDS	24118375	24118662	.	+	0	Parent=Os07t0591800-01
Chr07	irgsp1_rep	three_prime_UTR	24118663	24118725	.	+	.	Parent=Os07t0591800-01
Chr07	irgsp1_rep	three_prime_UTR	24118875	24119073	.	+	.	Parent=Os07t0591800-01
Chr07	irgsp1_rep	three_prime_UTR	24119356	24119574	.	+	.	Parent=Os07t0591800-01
Chr07	irgsp1_rep	three_prime_UTR	24119860	24120813	.	+	.	Parent=Os07t0591800-01
Chr07	irgsp1_rep	mRNA	24125333	24127487	.	+	.	ID=Os07t0592000-01;Name=Os07t0592000-01;Locus_id=Os07g0592000;RAP-DB Gene Symbol Synonym(s)=OsGASR9;RAP-DB Gene Name Synonym(s)=gibberellic acid-stimulated rice 9;CGSNL Gene Symbol=GASR9;CGSNL Gene Name=GIBBERELLIC ACID-STIMULATED RICE 9;Oryzabase Gene Symbol Synonym(s)=OsGASR9;Oryzabase Gene Name Synonym(s)=gibberellic acid-stimulated rice 9;Note=A member of gibberellic acid (GA)-stimulated transcript gene family%2C Regulation of grain size and yield;Transcript_evidence=AK107438;ORF_evidence=Q0D500;InterPro=Gibberellin regulated protein (IPR003854);NIAS_FLcDNA=002-128-B02;Manual Curation=July 17%2C 2019;Literature_PMID=31300138;Oryzabase=23131;Expression=AK107438;TENOR=Os07t0592000-01;KEGG=Os07t0592000-01;Subcellular location=plasma membrane (GO:0005886), cytoplasm (GO:0005737), nucleus (GO:0005634)
Chr07	irgsp1_rep	five_prime_UTR	24125333	24126350	.	+	.	Parent=Os07t0592000-01
Chr07	irgsp1_rep	CDS	24126351	24126438	.	+	0	Parent=Os07t0592000-01
Chr07	irgsp1_rep	CDS	24126540	24126760	.	+	2	Parent=Os07t0592000-01
Chr07	irgsp1_rep	three_prime_UTR	24126761	24127487	.	+	.	Parent=Os07t0592000-01
Chr07	irgsp1_rep	mRNA	24128367	24129622	.	+	.	ID=Os07t0592100-01;Name=Os07t0592100-01;Locus_id=Os07g0592100;Note=Similar to Oxidoreductase%2C short chain dehydrogenase/reductase family protein%2C expressed.;Transcript_evidence=AK107947 (DDBJ%2C Best hit);ORF_evidence=Q2QUJ9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Polyketide synthase/Fatty acid synthase%2C KR (IPR020842);NIAS_FLcDNA=002-135-B07;TENOR=Os07t0592100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	24128367	24128434	.	+	.	Parent=Os07t0592100-01
Chr07	irgsp1_rep	CDS	24128435	24128466	.	+	0	Parent=Os07t0592100-01
Chr07	irgsp1_rep	CDS	24128681	24129554	.	+	1	Parent=Os07t0592100-01
Chr07	irgsp1_rep	three_prime_UTR	24129555	24129622	.	+	.	Parent=Os07t0592100-01
Chr07	irgsp1_rep	mRNA	24129716	24137321	.	-	.	ID=Os07t0592200-02;Name=Os07t0592200-02;Locus_id=Os07g0592200;RAP-DB Gene Symbol Synonym(s)=OsAP65;RAP-DB Gene Name Synonym(s)=aspartic protease 65;Oryzabase Gene Symbol Synonym(s)=OsAP65;Oryzabase Gene Name Synonym(s)=aspartic protease 65;Note=Aspartic protease%2C Pollen germination and pollen tube growth;Transcript_evidence=AK099740;ORF_evidence=Q84RX6;GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Aspartic peptidase A1 family (IPR001461),Aspartic peptidase domain (IPR021109),Xylanase inhibitor%2C N-terminal (IPR032861),Peptidase family A1 domain (IPR033121),Xylanase inhibitor%2C C-terminal (IPR032799),Aspartic peptidase%2C active site (IPR001969);NIAS_FLcDNA=J013091C13;Manual Curation=December 9%2C 2016;Literature_PMID=23918968;Oryzabase=13344;Expression=AK099740;TENOR=Os07t0592200-02;KEGG=Os07t0592200-02
Chr07	irgsp1_rep	five_prime_UTR	24137278	24137321	.	-	.	Parent=Os07t0592200-02
Chr07	irgsp1_rep	CDS	24137012	24137277	.	-	0	Parent=Os07t0592200-02
Chr07	irgsp1_rep	CDS	24136760	24136880	.	-	1	Parent=Os07t0592200-02
Chr07	irgsp1_rep	CDS	24134903	24135330	.	-	0	Parent=Os07t0592200-02
Chr07	irgsp1_rep	CDS	24134623	24134779	.	-	1	Parent=Os07t0592200-02
Chr07	irgsp1_rep	CDS	24134180	24134262	.	-	0	Parent=Os07t0592200-02
Chr07	irgsp1_rep	CDS	24134003	24134099	.	-	1	Parent=Os07t0592200-02
Chr07	irgsp1_rep	CDS	24133811	24133883	.	-	0	Parent=Os07t0592200-02
Chr07	irgsp1_rep	CDS	24132639	24132815	.	-	2	Parent=Os07t0592200-02
Chr07	irgsp1_rep	CDS	24131202	24131323	.	-	2	Parent=Os07t0592200-02
Chr07	irgsp1_rep	CDS	24130932	24131033	.	-	0	Parent=Os07t0592200-02
Chr07	irgsp1_rep	CDS	24130749	24130846	.	-	0	Parent=Os07t0592200-02
Chr07	irgsp1_rep	CDS	24130086	24130257	.	-	1	Parent=Os07t0592200-02
Chr07	irgsp1_rep	three_prime_UTR	24129716	24130085	.	-	.	Parent=Os07t0592200-02
Chr07	irgsp1_rep	mRNA	24129717	24134715	.	-	.	ID=Os07t0592200-03;Name=Os07t0592200-03;Locus_id=Os07g0592200;Oryzabase Gene Symbol Synonym(s)=OsAP65;Oryzabase Gene Name Synonym(s)=aspartic protease 65;Note=Similar to predicted protein.;Transcript_evidence=AK061647 (DDBJ%2C Best hit);ORF_evidence=NP_199124.3 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=001-036-B11;Oryzabase=13344;Expression=AK061647;TENOR=Os07t0592200-03;KEGG=Os07t0592200-03
Chr07	irgsp1_rep	CDS	24134623	24134715	.	-	0	Parent=Os07t0592200-03
Chr07	irgsp1_rep	CDS	24134180	24134262	.	-	0	Parent=Os07t0592200-03
Chr07	irgsp1_rep	CDS	24134003	24134099	.	-	1	Parent=Os07t0592200-03
Chr07	irgsp1_rep	CDS	24133811	24133883	.	-	0	Parent=Os07t0592200-03
Chr07	irgsp1_rep	CDS	24132639	24132815	.	-	2	Parent=Os07t0592200-03
Chr07	irgsp1_rep	CDS	24131202	24131323	.	-	2	Parent=Os07t0592200-03
Chr07	irgsp1_rep	CDS	24130932	24131033	.	-	0	Parent=Os07t0592200-03
Chr07	irgsp1_rep	CDS	24130749	24130846	.	-	0	Parent=Os07t0592200-03
Chr07	irgsp1_rep	CDS	24130086	24130257	.	-	1	Parent=Os07t0592200-03
Chr07	irgsp1_rep	three_prime_UTR	24129717	24130085	.	-	.	Parent=Os07t0592200-03
Chr07	irgsp1_rep	mRNA	24137963	24142912	.	-	.	ID=Os07t0592300-01;Name=Os07t0592300-01;Locus_id=Os07g0592300;Note=Frigida-like family protein.;Transcript_evidence=AK065016 (DDBJ%2C Best hit);ORF_evidence=B9FY75 (UniProt);InterPro=Frigida-like (IPR012474);NIAS_FLcDNA=J013001F14;Expression=AK065016;TENOR=Os07t0592300-01;KEGG=Os07t0592300-01
Chr07	irgsp1_rep	five_prime_UTR	24142562	24142912	.	-	.	Parent=Os07t0592300-01
Chr07	irgsp1_rep	five_prime_UTR	24140655	24140672	.	-	.	Parent=Os07t0592300-01
Chr07	irgsp1_rep	CDS	24139586	24140654	.	-	0	Parent=Os07t0592300-01
Chr07	irgsp1_rep	CDS	24139233	24139402	.	-	2	Parent=Os07t0592300-01
Chr07	irgsp1_rep	CDS	24138213	24138800	.	-	0	Parent=Os07t0592300-01
Chr07	irgsp1_rep	three_prime_UTR	24137963	24138212	.	-	.	Parent=Os07t0592300-01
Chr07	irgsp1_rep	mRNA	24149718	24152074	.	-	.	ID=Os07t0592600-01;Name=Os07t0592600-01;Locus_id=Os07g0592600;RAP-DB Gene Symbol Synonym(s)=GH3-8%2C OsGH3-8%2C OsMGH3%2C OsGH3.8;RAP-DB Gene Name Synonym(s)=GH3-8%2C IAA-amino synthetase%2C OsMADS1 regulated GH3 domain-encoding gene;CGSNL Gene Symbol=GH3-8;CGSNL Gene Name=GH3-8;Oryzabase Gene Symbol Synonym(s)=OsGH3-8%2C OsMGH3%2C OsGH3.8%2C GH3.8%2C OsGH3-2;Note=Indole-3-acetic acid (IAA)-amido synthetase%2C Auxin signaling and defense signaling in a pathogen-nonspecific manner;Transcript_evidence=AK101193;ORF_evidence=Q0D4Z6;InterPro=GH3 auxin-responsive promoter (IPR004993);NIAS_FLcDNA=J033030I03;Manual Curation=February 19%2C 2010;Literature_PMID=15856348,18192436;Oryzabase=7349;Expression=AK101193;TENOR=Os07t0592600-01;KEGG=Os07t0592600-01
Chr07	irgsp1_rep	five_prime_UTR	24151917	24152074	.	-	.	Parent=Os07t0592600-01
Chr07	irgsp1_rep	CDS	24151474	24151916	.	-	0	Parent=Os07t0592600-01
Chr07	irgsp1_rep	CDS	24150005	24151379	.	-	1	Parent=Os07t0592600-01
Chr07	irgsp1_rep	three_prime_UTR	24149718	24150004	.	-	.	Parent=Os07t0592600-01
Chr07	irgsp1_rep	mRNA	24150033	24151872	.	+	.	ID=Os07t0592733-00;Name=Os07t0592733-00;Locus_id=Os07g0592733;Note=Hypothetical protein.;Transcript_evidence=tplb0045h20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0592733-00
Chr07	irgsp1_rep	five_prime_UTR	24150033	24150034	.	+	.	Parent=Os07t0592733-00
Chr07	irgsp1_rep	CDS	24150035	24150790	.	+	0	Parent=Os07t0592733-00
Chr07	irgsp1_rep	three_prime_UTR	24150791	24151360	.	+	.	Parent=Os07t0592733-00
Chr07	irgsp1_rep	three_prime_UTR	24151457	24151872	.	+	.	Parent=Os07t0592733-00
Chr07	irgsp1_rep	mRNA	24164226	24164995	.	+	.	ID=Os07t0593000-01;Name=Os07t0593000-01;Locus_id=Os07g0593000;RAP-DB Gene Symbol Synonym(s)=OsZFP7;CGSNL Gene Symbol=ZFP7;CGSNL Gene Name=ZINC FINGER PROTEIN 7;Oryzabase Gene Symbol Synonym(s)=OsZFP7;Oryzabase Gene Name Synonym(s)=zinc finger protein 7;Note=C2H2 transcription factor%2C Leaf development;Transcript_evidence=AK063147;ORF_evidence=Q84RX1;GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Zinc finger C2H2 superfamily (IPR036236),Zinc finger C2H2-type (IPR013087);NIAS_FLcDNA=001-111-H03;Manual Curation=February 13%2C 2018;Literature_PMID=29411384;Oryzabase=22324;Expression=AK063147;TENOR=Os07t0593000-01;KEGG=Os07t0593000-01;Subcellular location=nucleus (GO:0005634)
Chr07	irgsp1_rep	five_prime_UTR	24164226	24164293	.	+	.	Parent=Os07t0593000-01
Chr07	irgsp1_rep	CDS	24164294	24164860	.	+	0	Parent=Os07t0593000-01
Chr07	irgsp1_rep	three_prime_UTR	24164861	24164995	.	+	.	Parent=Os07t0593000-01
Chr07	irgsp1_rep	mRNA	24171318	24171566	.	-	.	ID=Os07t0593100-00;Name=Os07t0593100-00;Locus_id=Os07g0593100;Note=Conserved hypothetical protein.;Transcript_evidence=EU941049 (DDBJ);ORF_evidence=XP_002327722.1 (RefSeq);TENOR=Os07t0593100-00
Chr07	irgsp1_rep	five_prime_UTR	24171523	24171566	.	-	.	Parent=Os07t0593100-00
Chr07	irgsp1_rep	CDS	24171355	24171522	.	-	0	Parent=Os07t0593100-00
Chr07	irgsp1_rep	three_prime_UTR	24171318	24171354	.	-	.	Parent=Os07t0593100-00
Chr07	irgsp1_rep	mRNA	24172694	24174831	.	-	.	ID=Os07t0593200-01;Name=Os07t0593200-01;Locus_id=Os07g0593200;Note=Similar to predicted protein.;Transcript_evidence=AK063361 (DDBJ%2C Best hit);ORF_evidence=B8B820 (UniProt);NIAS_FLcDNA=001-114-D02;Expression=AK063361;TENOR=Os07t0593200-01;KEGG=Os07t0593200-01
Chr07	irgsp1_rep	five_prime_UTR	24174635	24174831	.	-	.	Parent=Os07t0593200-01
Chr07	irgsp1_rep	CDS	24174443	24174634	.	-	0	Parent=Os07t0593200-01
Chr07	irgsp1_rep	three_prime_UTR	24172694	24174442	.	-	.	Parent=Os07t0593200-01
Chr07	irgsp1_rep	mRNA	24173345	24174795	.	-	.	ID=Os07t0593200-02;Name=Os07t0593200-02;Locus_id=Os07g0593200;Note=Zinc finger%2C SWIM-type domain containing protein.;Transcript_evidence=AK121652 (DDBJ%2C Best hit);ORF_evidence=B8B820 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C SWIM-type (IPR007527);NIAS_FLcDNA=J033061B14;Expression=AK121652;TENOR=Os07t0593200-02;KEGG=Os07t0593200-02
Chr07	irgsp1_rep	five_prime_UTR	24174635	24174795	.	-	.	Parent=Os07t0593200-02
Chr07	irgsp1_rep	CDS	24174509	24174634	.	-	0	Parent=Os07t0593200-02
Chr07	irgsp1_rep	CDS	24174295	24174402	.	-	0	Parent=Os07t0593200-02
Chr07	irgsp1_rep	CDS	24173639	24173740	.	-	0	Parent=Os07t0593200-02
Chr07	irgsp1_rep	three_prime_UTR	24173345	24173638	.	-	.	Parent=Os07t0593200-02
Chr07	irgsp1_rep	mRNA	24177644	24178121	.	+	.	ID=Os07t0593332-00;Name=Os07t0593332-00;Locus_id=Os07g0593332;Note=Similar to MFP1 attachment factor 1.;Transcript_evidence=CT836049 (DDBJ%2C Best hit);ORF_evidence=NP_001060166.2 (RefSeq);TENOR=Os07t0593332-00;KEGG=Os07t0593332-00
Chr07	irgsp1_rep	five_prime_UTR	24177644	24177644	.	+	.	Parent=Os07t0593332-00
Chr07	irgsp1_rep	CDS	24177645	24177902	.	+	0	Parent=Os07t0593332-00
Chr07	irgsp1_rep	three_prime_UTR	24177903	24178121	.	+	.	Parent=Os07t0593332-00
Chr07	irgsp1_rep	mRNA	24181358	24183221	.	+	.	ID=Os07t0593400-00;Name=Os07t0593400-00;Locus_id=Os07g0593400;Note=Similar to golgi transport 1 protein B.;Transcript_evidence=CT841780 (DDBJ%2C Best hit);ORF_evidence=NP_001148539.1 (RefSeq);GO=Biological Process: vesicle-mediated transport (GO:0016192);InterPro=Vesicle transport protein%2C Got1/SFT2-like (IPR007305);TENOR=Os07t0593400-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	24181358	24181408	.	+	.	Parent=Os07t0593400-00
Chr07	irgsp1_rep	five_prime_UTR	24181944	24181999	.	+	.	Parent=Os07t0593400-00
Chr07	irgsp1_rep	CDS	24182000	24182035	.	+	0	Parent=Os07t0593400-00
Chr07	irgsp1_rep	CDS	24182130	24182210	.	+	0	Parent=Os07t0593400-00
Chr07	irgsp1_rep	CDS	24182315	24182412	.	+	0	Parent=Os07t0593400-00
Chr07	irgsp1_rep	CDS	24182552	24182633	.	+	1	Parent=Os07t0593400-00
Chr07	irgsp1_rep	CDS	24182735	24182773	.	+	0	Parent=Os07t0593400-00
Chr07	irgsp1_rep	three_prime_UTR	24182774	24183221	.	+	.	Parent=Os07t0593400-00
Chr07	irgsp1_rep	mRNA	24210991	24212732	.	+	.	ID=Os07t0594400-01;Name=Os07t0594400-01;Locus_id=Os07g0594400;Note=Hypothetical conserved gene.;Transcript_evidence=AK241874 (DDBJ%2C Best hit);ORF_evidence=Q84RW3 (UniProt);NIAS_FLcDNA=J065218E03;TENOR=Os07t0594400-01;KEGG=Os07t0594400-01
Chr07	irgsp1_rep	five_prime_UTR	24210991	24211020	.	+	.	Parent=Os07t0594400-01
Chr07	irgsp1_rep	CDS	24211021	24211063	.	+	0	Parent=Os07t0594400-01
Chr07	irgsp1_rep	CDS	24211569	24211600	.	+	2	Parent=Os07t0594400-01
Chr07	irgsp1_rep	CDS	24211715	24212046	.	+	0	Parent=Os07t0594400-01
Chr07	irgsp1_rep	CDS	24212133	24212214	.	+	1	Parent=Os07t0594400-01
Chr07	irgsp1_rep	CDS	24212306	24212344	.	+	0	Parent=Os07t0594400-01
Chr07	irgsp1_rep	three_prime_UTR	24212345	24212732	.	+	.	Parent=Os07t0594400-01
Chr07	irgsp1_rep	mRNA	24226536	24226999	.	-	.	ID=Os07t0594966-00;Name=Os07t0594966-00;Locus_id=Os07g0594966;Note=Similar to CytoChrome P450 family protein%2C expressed.;Transcript_evidence=BT039604 (DDBJ);ORF_evidence=Q53KW6 (UniProt);TENOR=Os07t0594966-00
Chr07	irgsp1_rep	CDS	24226547	24226999	.	-	0	Parent=Os07t0594966-00
Chr07	irgsp1_rep	three_prime_UTR	24226536	24226546	.	-	.	Parent=Os07t0594966-00
Chr07	irgsp1_rep	mRNA	24226624	24227003	.	+	.	ID=Os07t0595032-00;Name=Os07t0595032-00;Locus_id=Os07g0595032;Note=Hypothetical protein.;Transcript_evidence=EU955821 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0595032-00
Chr07	irgsp1_rep	five_prime_UTR	24226624	24226634	.	+	.	Parent=Os07t0595032-00
Chr07	irgsp1_rep	CDS	24226635	24227003	.	+	0	Parent=Os07t0595032-00
Chr07	irgsp1_rep	mRNA	24227275	24227577	.	-	.	ID=Os07t0595100-00;Name=Os07t0595100-00;Locus_id=Os07g0595100;Note=Similar to Dcp1-like decapping family protein.;Transcript_evidence=EU950594 (DDBJ);ORF_evidence=B4FT08 (UniProt);TENOR=Os07t0595100-00;KEGG=Os07t0595100-00
Chr07	irgsp1_rep	CDS	24227275	24227577	.	-	0	Parent=Os07t0595100-00
Chr07	irgsp1_rep	mRNA	24242250	24243369	.	-	.	ID=Os07t0595700-01;Name=Os07t0595700-01;Locus_id=Os07g0595700;Note=Hypothetical protein.;Transcript_evidence=AK108488 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=002-143-F11;Expression=AK108488;TENOR=Os07t0595700-01;KEGG=Os07t0595700-01
Chr07	irgsp1_rep	five_prime_UTR	24242960	24243369	.	-	.	Parent=Os07t0595700-01
Chr07	irgsp1_rep	CDS	24242288	24242959	.	-	0	Parent=Os07t0595700-01
Chr07	irgsp1_rep	three_prime_UTR	24242250	24242287	.	-	.	Parent=Os07t0595700-01
Chr07	irgsp1_rep	mRNA	24243603	24243837	.	-	.	ID=Os07t0595750-00;Name=Os07t0595750-00;Locus_id=Os07g0595750;Note=Similar to predicted protein.;Transcript_evidence=EU940750 (DDBJ);ORF_evidence=XP_002327722.1 (RefSeq);TENOR=Os07t0595750-00;KEGG=Os07t0595750-00
Chr07	irgsp1_rep	five_prime_UTR	24243780	24243837	.	-	.	Parent=Os07t0595750-00
Chr07	irgsp1_rep	CDS	24243603	24243779	.	-	0	Parent=Os07t0595750-00
Chr07	irgsp1_rep	mRNA	24244101	24247178	.	+	.	ID=Os07t0595800-01;Name=Os07t0595800-01;Locus_id=Os07g0595800;Note=Prefoldin domain containing protein.;Transcript_evidence=AK066349 (DDBJ%2C Best hit);ORF_evidence=NP_001151093.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Cellular Component: prefoldin complex (GO:0016272),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Prefoldin subunit (IPR004127),Prefoldin (IPR009053);NIAS_FLcDNA=J013062C05;Expression=AK066349;TENOR=Os07t0595800-01;KEGG=Os07t0595800-01
Chr07	irgsp1_rep	five_prime_UTR	24244101	24244254	.	+	.	Parent=Os07t0595800-01
Chr07	irgsp1_rep	CDS	24244255	24244394	.	+	0	Parent=Os07t0595800-01
Chr07	irgsp1_rep	CDS	24244518	24244619	.	+	1	Parent=Os07t0595800-01
Chr07	irgsp1_rep	CDS	24245208	24245315	.	+	1	Parent=Os07t0595800-01
Chr07	irgsp1_rep	CDS	24246792	24246846	.	+	1	Parent=Os07t0595800-01
Chr07	irgsp1_rep	CDS	24246940	24246984	.	+	0	Parent=Os07t0595800-01
Chr07	irgsp1_rep	three_prime_UTR	24246985	24247178	.	+	.	Parent=Os07t0595800-01
Chr07	irgsp1_rep	mRNA	24250134	24251465	.	+	.	ID=Os07t0595900-01;Name=Os07t0595900-01;Locus_id=Os07g0595900;Note=Hypothetical conserved gene.;Transcript_evidence=AK289071 (DDBJ%2C Best hit);ORF_evidence=Q84K17 (UniProt);NIAS_FLcDNA=J090094H01;TENOR=Os07t0595900-01;KEGG=Os07t0595900-01
Chr07	irgsp1_rep	CDS	24250134	24251054	.	+	0	Parent=Os07t0595900-01
Chr07	irgsp1_rep	three_prime_UTR	24251055	24251465	.	+	.	Parent=Os07t0595900-01
Chr07	irgsp1_rep	mRNA	24252923	24257885	.	-	.	ID=Os07t0596000-01;Name=Os07t0596000-01;Locus_id=Os07g0596000;Note=Zinc finger%2C DHHC-type domain containing protein.;Transcript_evidence=AK103165 (DDBJ%2C Best hit),AK065600 (DDBJ%2C Best hit);ORF_evidence=B6SXJ3 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C DHHC-type%2C palmitoyltransferase (IPR001594);NIAS_FLcDNA=J033121E03,J013030I07;Expression=AK103165;TENOR=Os07t0596000-01;KEGG=Os07t0596000-01
Chr07	irgsp1_rep	five_prime_UTR	24257655	24257885	.	-	.	Parent=Os07t0596000-01
Chr07	irgsp1_rep	CDS	24257613	24257654	.	-	0	Parent=Os07t0596000-01
Chr07	irgsp1_rep	CDS	24257393	24257506	.	-	0	Parent=Os07t0596000-01
Chr07	irgsp1_rep	CDS	24255710	24256093	.	-	0	Parent=Os07t0596000-01
Chr07	irgsp1_rep	CDS	24255550	24255618	.	-	0	Parent=Os07t0596000-01
Chr07	irgsp1_rep	CDS	24255394	24255465	.	-	0	Parent=Os07t0596000-01
Chr07	irgsp1_rep	CDS	24255111	24255176	.	-	0	Parent=Os07t0596000-01
Chr07	irgsp1_rep	three_prime_UTR	24255019	24255110	.	-	.	Parent=Os07t0596000-01
Chr07	irgsp1_rep	three_prime_UTR	24254821	24254901	.	-	.	Parent=Os07t0596000-01
Chr07	irgsp1_rep	three_prime_UTR	24254366	24254548	.	-	.	Parent=Os07t0596000-01
Chr07	irgsp1_rep	three_prime_UTR	24252923	24254002	.	-	.	Parent=Os07t0596000-01
Chr07	irgsp1_rep	mRNA	24262436	24263105	.	+	.	ID=Os07t0596200-01;Name=Os07t0596200-01;Locus_id=Os07g0596200;Note=Conserved hypothetical protein.;Transcript_evidence=AK107527 (DDBJ%2C Best hit);ORF_evidence=B8B831 (UniProt);NIAS_FLcDNA=002-129-G05;Expression=AK107527;TENOR=Os07t0596200-01;KEGG=Os07t0596200-01
Chr07	irgsp1_rep	five_prime_UTR	24262436	24262735	.	+	.	Parent=Os07t0596200-01
Chr07	irgsp1_rep	CDS	24262736	24262936	.	+	0	Parent=Os07t0596200-01
Chr07	irgsp1_rep	three_prime_UTR	24262937	24263105	.	+	.	Parent=Os07t0596200-01
Chr07	irgsp1_rep	mRNA	24266479	24273370	.	-	.	ID=Os07t0596300-01;Name=Os07t0596300-01;Locus_id=Os07g0596300;CGSNL Gene Symbol=BUI1;CGSNL Gene Name=BENT UPPERMOST INTERNODE 1;Oryzabase Gene Symbol Synonym(s)=BUI1%2C FH5%2C FH5/BUI1%2C RMD%2C OsFH5%2C FH5/RMD;Oryzabase Gene Name Synonym(s)=BENT UPPERMOST INTERNODE1%2C class II formin FH5%2C Rice Morphology Determinant%2C formin homology 5%2C Type II Formin FH5%2C forming family protein 5%2C FH2 protein 5%2C FH2 domain protein 5;Note=Actin-binding FH2 domain containing protein.;Transcript_evidence=AK120222 (DDBJ%2C Best hit);ORF_evidence=F1BVF5 (UniProt);GO=Biological Process: cellular component organization (GO:0016043),Biological Process: actin cytoskeleton organization (GO:0030036),Molecular Function: actin binding (GO:0003779);InterPro=Actin-binding FH2/DRF autoregulatory (IPR003104),Actin-binding FH2 (IPR015425);NIAS_FLcDNA=J013041H24;Oryzabase=9253;Expression=AK120222;TENOR=Os07t0596300-01;KEGG=Os07t0596300-01
Chr07	irgsp1_rep	five_prime_UTR	24273330	24273370	.	-	.	Parent=Os07t0596300-01
Chr07	irgsp1_rep	CDS	24272311	24273329	.	-	0	Parent=Os07t0596300-01
Chr07	irgsp1_rep	CDS	24271921	24272047	.	-	1	Parent=Os07t0596300-01
Chr07	irgsp1_rep	CDS	24271636	24271707	.	-	0	Parent=Os07t0596300-01
Chr07	irgsp1_rep	CDS	24271458	24271556	.	-	0	Parent=Os07t0596300-01
Chr07	irgsp1_rep	CDS	24271344	24271385	.	-	0	Parent=Os07t0596300-01
Chr07	irgsp1_rep	CDS	24270139	24270270	.	-	0	Parent=Os07t0596300-01
Chr07	irgsp1_rep	CDS	24269954	24270035	.	-	0	Parent=Os07t0596300-01
Chr07	irgsp1_rep	CDS	24269124	24269218	.	-	2	Parent=Os07t0596300-01
Chr07	irgsp1_rep	CDS	24268658	24268729	.	-	0	Parent=Os07t0596300-01
Chr07	irgsp1_rep	CDS	24268442	24268558	.	-	0	Parent=Os07t0596300-01
Chr07	irgsp1_rep	CDS	24267919	24267987	.	-	0	Parent=Os07t0596300-01
Chr07	irgsp1_rep	CDS	24267762	24267828	.	-	0	Parent=Os07t0596300-01
Chr07	irgsp1_rep	CDS	24267292	24267431	.	-	2	Parent=Os07t0596300-01
Chr07	irgsp1_rep	CDS	24267114	24267206	.	-	0	Parent=Os07t0596300-01
Chr07	irgsp1_rep	three_prime_UTR	24266953	24267113	.	-	.	Parent=Os07t0596300-01
Chr07	irgsp1_rep	three_prime_UTR	24266479	24266865	.	-	.	Parent=Os07t0596300-01
Chr07	irgsp1_rep	mRNA	24266479	24276820	.	-	.	ID=Os07t0596300-02;Name=Os07t0596300-02;Locus_id=Os07g0596300;RAP-DB Gene Symbol Synonym(s)=BUI1%2C FH5%2C FH5/BUI1%2C RMD%2C FH5/RMD;RAP-DB Gene Name Synonym(s)=BENT UPPERMOST INTERNODE 1%2C BENT UPPERMOST INTERNODE1%2C class II formin FH5%2C Rice Morphology Determinant;CGSNL Gene Symbol=BUI1;CGSNL Gene Name=BENT UPPERMOST INTERNODE 1;Oryzabase Gene Symbol Synonym(s)=BUI1%2C FH5%2C FH5/BUI1%2C RMD%2C OsFH5%2C FH5/RMD;Oryzabase Gene Name Synonym(s)=BENT UPPERMOST INTERNODE1%2C class II formin FH5%2C Rice Morphology Determinant%2C formin homology 5%2C Type II Formin FH5%2C forming family protein 5%2C FH2 protein 5%2C FH2 domain protein 5;Note=Class II formin%2C Type II formin%2C Actin organization%2C Morphogenesis;Transcript_evidence=HQ123580 (Zhejing 22);ORF_evidence=Q84ZL0,F1BVF5;GO=Biological Process: actin nucleation (GO:0045010),Molecular Function: protein binding (GO:0005515),Cellular Component: actin filament (GO:0005884);InterPro=Formin-like family%2C plant (IPR027643),Protein-tyrosine phosphatase-like (IPR029021),C2 domain (IPR000008),Tensin phosphatase%2C C2 domain (IPR014020),Formin%2C FH2 domain (IPR015425);Manual Curation=April 26%2C 2011;Literature_PMID=21307283,21307285;Oryzabase=9253
Chr07	irgsp1_rep	CDS	24276748	24276820	.	-	0	Parent=Os07t0596300-02
Chr07	irgsp1_rep	CDS	24275385	24276085	.	-	2	Parent=Os07t0596300-02
Chr07	irgsp1_rep	CDS	24275093	24275311	.	-	0	Parent=Os07t0596300-02
Chr07	irgsp1_rep	CDS	24272311	24274994	.	-	0	Parent=Os07t0596300-02
Chr07	irgsp1_rep	CDS	24271921	24272047	.	-	1	Parent=Os07t0596300-02
Chr07	irgsp1_rep	CDS	24271636	24271707	.	-	0	Parent=Os07t0596300-02
Chr07	irgsp1_rep	CDS	24271458	24271556	.	-	0	Parent=Os07t0596300-02
Chr07	irgsp1_rep	CDS	24271344	24271385	.	-	0	Parent=Os07t0596300-02
Chr07	irgsp1_rep	CDS	24270139	24270270	.	-	0	Parent=Os07t0596300-02
Chr07	irgsp1_rep	CDS	24269954	24270035	.	-	0	Parent=Os07t0596300-02
Chr07	irgsp1_rep	CDS	24269124	24269218	.	-	2	Parent=Os07t0596300-02
Chr07	irgsp1_rep	CDS	24268658	24268729	.	-	0	Parent=Os07t0596300-02
Chr07	irgsp1_rep	CDS	24268442	24268558	.	-	0	Parent=Os07t0596300-02
Chr07	irgsp1_rep	CDS	24267919	24267987	.	-	0	Parent=Os07t0596300-02
Chr07	irgsp1_rep	CDS	24267762	24267828	.	-	0	Parent=Os07t0596300-02
Chr07	irgsp1_rep	CDS	24267292	24267431	.	-	2	Parent=Os07t0596300-02
Chr07	irgsp1_rep	CDS	24267114	24267206	.	-	0	Parent=Os07t0596300-02
Chr07	irgsp1_rep	three_prime_UTR	24266953	24267113	.	-	.	Parent=Os07t0596300-02
Chr07	irgsp1_rep	three_prime_UTR	24266479	24266865	.	-	.	Parent=Os07t0596300-02
Chr07	irgsp1_rep	mRNA	24293054	24298862	.	-	.	ID=Os07t0596600-01;Name=Os07t0596600-01;Locus_id=Os07g0596600;Oryzabase Gene Symbol Synonym(s)=Orysa%3BCKL2;Oryzabase Gene Name Synonym(s)=CDK-LIKE 2%2C cyclin-dependent kinase-like 2;Note=Similar to IBS1 (IMPAIRED IN BABA-INDUCED STERILITY 1)%3B ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase.;Transcript_evidence=AK122094 (DDBJ%2C Best hit);ORF_evidence=NP_173302.2 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033125C04;Oryzabase=13301;TENOR=Os07t0596600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	24298740	24298862	.	-	.	Parent=Os07t0596600-01
Chr07	irgsp1_rep	five_prime_UTR	24297917	24298474	.	-	.	Parent=Os07t0596600-01
Chr07	irgsp1_rep	five_prime_UTR	24297276	24297834	.	-	.	Parent=Os07t0596600-01
Chr07	irgsp1_rep	CDS	24296991	24297275	.	-	0	Parent=Os07t0596600-01
Chr07	irgsp1_rep	CDS	24296570	24296887	.	-	0	Parent=Os07t0596600-01
Chr07	irgsp1_rep	CDS	24295869	24296096	.	-	0	Parent=Os07t0596600-01
Chr07	irgsp1_rep	CDS	24295210	24295307	.	-	0	Parent=Os07t0596600-01
Chr07	irgsp1_rep	CDS	24294886	24294991	.	-	1	Parent=Os07t0596600-01
Chr07	irgsp1_rep	CDS	24294220	24294762	.	-	0	Parent=Os07t0596600-01
Chr07	irgsp1_rep	CDS	24294007	24294139	.	-	0	Parent=Os07t0596600-01
Chr07	irgsp1_rep	CDS	24293349	24293359	.	-	2	Parent=Os07t0596600-01
Chr07	irgsp1_rep	three_prime_UTR	24293054	24293348	.	-	.	Parent=Os07t0596600-01
Chr07	irgsp1_rep	mRNA	24292810	24298862	.	-	.	ID=Os07t0596600-02;Name=Os07t0596600-02;Locus_id=Os07g0596600;Oryzabase Gene Symbol Synonym(s)=Orysa%3BCKL2;Oryzabase Gene Name Synonym(s)=CDK-LIKE 2%2C cyclin-dependent kinase-like 2;Note=Similar to Cdc2MsC protein.;Transcript_evidence=AK067238 (DDBJ%2C Best hit);ORF_evidence=B7EY69 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013096G09;Oryzabase=13301;Expression=AK067238;TENOR=Os07t0596600-02;KEGG=Os07t0596600-02
Chr07	irgsp1_rep	five_prime_UTR	24298740	24298862	.	-	.	Parent=Os07t0596600-02
Chr07	irgsp1_rep	five_prime_UTR	24298319	24298474	.	-	.	Parent=Os07t0596600-02
Chr07	irgsp1_rep	CDS	24297917	24298318	.	-	0	Parent=Os07t0596600-02
Chr07	irgsp1_rep	CDS	24296991	24297275	.	-	0	Parent=Os07t0596600-02
Chr07	irgsp1_rep	CDS	24296570	24296887	.	-	0	Parent=Os07t0596600-02
Chr07	irgsp1_rep	CDS	24295869	24296096	.	-	0	Parent=Os07t0596600-02
Chr07	irgsp1_rep	CDS	24295210	24295307	.	-	0	Parent=Os07t0596600-02
Chr07	irgsp1_rep	CDS	24294886	24294991	.	-	1	Parent=Os07t0596600-02
Chr07	irgsp1_rep	CDS	24294220	24294762	.	-	0	Parent=Os07t0596600-02
Chr07	irgsp1_rep	CDS	24294007	24294139	.	-	0	Parent=Os07t0596600-02
Chr07	irgsp1_rep	CDS	24293349	24293359	.	-	2	Parent=Os07t0596600-02
Chr07	irgsp1_rep	three_prime_UTR	24292810	24293348	.	-	.	Parent=Os07t0596600-02
Chr07	irgsp1_rep	mRNA	24292999	24297251	.	-	.	ID=Os07t0596600-03;Name=Os07t0596600-03;Locus_id=Os07g0596600;Oryzabase Gene Symbol Synonym(s)=Orysa%3BCKL2;Oryzabase Gene Name Synonym(s)=CDK-LIKE 2%2C cyclin-dependent kinase-like 2;Note=Similar to predicted protein.;Transcript_evidence=AK105621 (DDBJ%2C Best hit);ORF_evidence=NP_173302.2 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-200-C06;Oryzabase=13301;Expression=AK105621;TENOR=Os07t0596600-03;KEGG=Os07t0596600-03 (EC:2.7.11.22)
Chr07	irgsp1_rep	CDS	24296991	24297251	.	-	0	Parent=Os07t0596600-03
Chr07	irgsp1_rep	CDS	24296570	24296887	.	-	0	Parent=Os07t0596600-03
Chr07	irgsp1_rep	CDS	24295869	24296096	.	-	0	Parent=Os07t0596600-03
Chr07	irgsp1_rep	CDS	24295210	24295307	.	-	0	Parent=Os07t0596600-03
Chr07	irgsp1_rep	CDS	24294886	24294991	.	-	1	Parent=Os07t0596600-03
Chr07	irgsp1_rep	CDS	24294220	24294762	.	-	0	Parent=Os07t0596600-03
Chr07	irgsp1_rep	CDS	24294007	24294139	.	-	0	Parent=Os07t0596600-03
Chr07	irgsp1_rep	CDS	24293349	24293359	.	-	2	Parent=Os07t0596600-03
Chr07	irgsp1_rep	three_prime_UTR	24292999	24293348	.	-	.	Parent=Os07t0596600-03
Chr07	irgsp1_rep	mRNA	24295213	24298079	.	+	.	ID=Os07t0596700-00;Name=Os07t0596700-00;Locus_id=Os07g0596700;Note=Hypothetical protein.;Transcript_evidence=tplb0040h06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0596700-00
Chr07	irgsp1_rep	five_prime_UTR	24295213	24295309	.	+	.	Parent=Os07t0596700-00
Chr07	irgsp1_rep	five_prime_UTR	24295874	24296098	.	+	.	Parent=Os07t0596700-00
Chr07	irgsp1_rep	five_prime_UTR	24296575	24296919	.	+	.	Parent=Os07t0596700-00
Chr07	irgsp1_rep	five_prime_UTR	24297017	24297122	.	+	.	Parent=Os07t0596700-00
Chr07	irgsp1_rep	CDS	24297123	24297286	.	+	0	Parent=Os07t0596700-00
Chr07	irgsp1_rep	CDS	24297926	24298079	.	+	1	Parent=Os07t0596700-00
Chr07	irgsp1_rep	mRNA	24312094	24315383	.	-	.	ID=Os07t0596900-00;Name=Os07t0596900-00;Locus_id=Os07g0596900;CGSNL Gene Symbol=WRKY88;CGSNL Gene Name=WRKY GENE 88;Oryzabase Gene Symbol Synonym(s)=OsWRKY88;Note=Similar to SUSIBA2-like (WRKY transcription factor 80).;Transcript_evidence=AY341847 (DDBJ%2C Best hit);ORF_evidence=B3GAU8 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=9221;Expression=AY341847;TENOR=Os07t0596900-00;KEGG=Os07t0596900-00
Chr07	irgsp1_rep	five_prime_UTR	24315295	24315383	.	-	.	Parent=Os07t0596900-00
Chr07	irgsp1_rep	CDS	24315064	24315294	.	-	0	Parent=Os07t0596900-00
Chr07	irgsp1_rep	CDS	24313780	24314501	.	-	0	Parent=Os07t0596900-00
Chr07	irgsp1_rep	CDS	24313547	24313669	.	-	1	Parent=Os07t0596900-00
Chr07	irgsp1_rep	CDS	24312207	24312429	.	-	1	Parent=Os07t0596900-00
Chr07	irgsp1_rep	three_prime_UTR	24312094	24312206	.	-	.	Parent=Os07t0596900-00
Chr07	irgsp1_rep	mRNA	24315421	24317851	.	+	.	ID=Os07t0596950-01;Name=Os07t0596950-01;Locus_id=Os07g0596950;Note=Conserved hypothetical protein.;Transcript_evidence=AK288652 (DDBJ%2C Best hit);ORF_evidence=Q6ZEY1 (UniProt);NIAS_FLcDNA=J090056N01;TENOR=Os07t0596950-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	24315421	24316559	.	+	.	Parent=Os07t0596950-01
Chr07	irgsp1_rep	CDS	24316560	24316646	.	+	0	Parent=Os07t0596950-01
Chr07	irgsp1_rep	three_prime_UTR	24316647	24317851	.	+	.	Parent=Os07t0596950-01
Chr07	irgsp1_rep	mRNA	24317702	24320963	.	-	.	ID=Os07t0597000-01;Name=Os07t0597000-01;Locus_id=Os07g0597000;Note=Similar to Eukaryotic translation initiation factor 5A (eIF-5A).;Transcript_evidence=AK103429 (DDBJ%2C Best hit),AK062134 (DDBJ%2C Best hit);ORF_evidence=Q9ZSU2 (UniProt);GO=Biological Process: translational frameshifting (GO:0006452),Biological Process: peptidyl-lysine modification to hypusine (GO:0008612),Biological Process: positive regulation of translational elongation (GO:0045901),Biological Process: positive regulation of translational termination (GO:0045905),Molecular Function: RNA binding (GO:0003723),Molecular Function: translation elongation factor activity (GO:0003746),Molecular Function: ribosome binding (GO:0043022);InterPro=Translation elongation factor IF5A (IPR001884),KOW (IPR005824),Translation protein SH3-like (IPR008991),Nucleic acid-binding%2C OB-fold (IPR012340),Translation protein SH3-like%2C subgroup (IPR014722),Nucleic acid-binding%2C OB-fold-like (IPR016027),Translation elongation factor%2C IF5A%2C hypusine site (IPR019769),Translation elongation factor%2C IF5A C-terminal (IPR020189);NIAS_FLcDNA=J033128M07,001-045-E11;Expression=AK103429;TENOR=Os07t0597000-01;KEGG=Os07t0597000-01
Chr07	irgsp1_rep	five_prime_UTR	24320882	24320963	.	-	.	Parent=Os07t0597000-01
Chr07	irgsp1_rep	five_prime_UTR	24320720	24320737	.	-	.	Parent=Os07t0597000-01
Chr07	irgsp1_rep	CDS	24320594	24320719	.	-	0	Parent=Os07t0597000-01
Chr07	irgsp1_rep	CDS	24319483	24319605	.	-	0	Parent=Os07t0597000-01
Chr07	irgsp1_rep	CDS	24319289	24319345	.	-	0	Parent=Os07t0597000-01
Chr07	irgsp1_rep	CDS	24319122	24319196	.	-	0	Parent=Os07t0597000-01
Chr07	irgsp1_rep	CDS	24318114	24318215	.	-	0	Parent=Os07t0597000-01
Chr07	irgsp1_rep	three_prime_UTR	24317702	24318113	.	-	.	Parent=Os07t0597000-01
Chr07	irgsp1_rep	mRNA	24345031	24345728	.	-	.	ID=Os07t0597050-00;Name=Os07t0597050-00;Locus_id=Os07g0597050;Note=Hypothetical gene.;Transcript_evidence=BT016976 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0597050-00
Chr07	irgsp1_rep	five_prime_UTR	24345312	24345728	.	-	.	Parent=Os07t0597050-00
Chr07	irgsp1_rep	CDS	24345031	24345311	.	-	0	Parent=Os07t0597050-00
Chr07	irgsp1_rep	mRNA	24345060	24345963	.	+	.	ID=Os07t0597100-01;Name=Os07t0597100-01;Locus_id=Os07g0597100;Note=Similar to Saccharopine dehydrogenase.;Transcript_evidence=AK105587 (DDBJ%2C Best hit);ORF_evidence=B6T3D2 (UniProt);NIAS_FLcDNA=001-129-A03;TENOR=Os07t0597100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	24345060	24345060	.	+	.	Parent=Os07t0597100-01
Chr07	irgsp1_rep	CDS	24345061	24345717	.	+	0	Parent=Os07t0597100-01
Chr07	irgsp1_rep	three_prime_UTR	24345718	24345963	.	+	.	Parent=Os07t0597100-01
Chr07	irgsp1_rep	mRNA	24347899	24351836	.	-	.	ID=Os07t0597200-01;Name=Os07t0597200-01;Locus_id=Os07g0597200;Oryzabase Gene Name Synonym(s)=BRASSINOSTEROID INSENSITIVE1%2C BRASSINOSTEROID INSENSITIVE 1;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK120815 (DDBJ%2C Best hit);ORF_evidence=Q94H87 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023014N07;Oryzabase=21396;Expression=AK120815;TENOR=Os07t0597200-01;KEGG=Os07t0597200-01
Chr07	irgsp1_rep	five_prime_UTR	24351637	24351836	.	-	.	Parent=Os07t0597200-01
Chr07	irgsp1_rep	CDS	24351591	24351636	.	-	0	Parent=Os07t0597200-01
Chr07	irgsp1_rep	CDS	24348232	24351506	.	-	2	Parent=Os07t0597200-01
Chr07	irgsp1_rep	three_prime_UTR	24347899	24348231	.	-	.	Parent=Os07t0597200-01
Chr07	irgsp1_rep	mRNA	24347981	24351796	.	-	.	ID=Os07t0597200-02;Name=Os07t0597200-02;Locus_id=Os07g0597200;Oryzabase Gene Name Synonym(s)=BRASSINOSTEROID INSENSITIVE1%2C BRASSINOSTEROID INSENSITIVE 1;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK119897 (DDBJ%2C Best hit);ORF_evidence=Q94H87 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-180-C07;Oryzabase=21396;Expression=AK119897;TENOR=Os07t0597200-02;KEGG=Os07t0597200-02
Chr07	irgsp1_rep	five_prime_UTR	24351637	24351796	.	-	.	Parent=Os07t0597200-02
Chr07	irgsp1_rep	CDS	24351591	24351636	.	-	0	Parent=Os07t0597200-02
Chr07	irgsp1_rep	CDS	24348232	24351506	.	-	2	Parent=Os07t0597200-02
Chr07	irgsp1_rep	three_prime_UTR	24347981	24348231	.	-	.	Parent=Os07t0597200-02
Chr07	irgsp1_rep	mRNA	24355706	24356664	.	-	.	ID=Os07t0597400-01;Name=Os07t0597400-01;Locus_id=Os07g0597400;Note=Conserved hypothetical protein.;Transcript_evidence=AK243207 (DDBJ%2C Best hit);ORF_evidence=NP_001175285.1 (RefSeq);NIAS_FLcDNA=J100041L21;TENOR=Os07t0597400-01;KEGG=Os07t0597400-01
Chr07	irgsp1_rep	five_prime_UTR	24356243	24356664	.	-	.	Parent=Os07t0597400-01
Chr07	irgsp1_rep	CDS	24356003	24356242	.	-	0	Parent=Os07t0597400-01
Chr07	irgsp1_rep	CDS	24355748	24355891	.	-	0	Parent=Os07t0597400-01
Chr07	irgsp1_rep	three_prime_UTR	24355706	24355747	.	-	.	Parent=Os07t0597400-01
Chr07	irgsp1_rep	mRNA	24370734	24371467	.	+	.	ID=Os07t0597500-01;Name=Os07t0597500-01;Locus_id=Os07g0597500;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK241258 (DDBJ%2C Best hit);ORF_evidence=Q01HW1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: NAD binding (GO:0051287);InterPro=D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain (IPR006139),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J065130O18;TENOR=Os07t0597500-01;KEGG=Os07t0597500-01
Chr07	irgsp1_rep	five_prime_UTR	24370734	24370734	.	+	.	Parent=Os07t0597500-01
Chr07	irgsp1_rep	CDS	24370735	24371043	.	+	0	Parent=Os07t0597500-01
Chr07	irgsp1_rep	three_prime_UTR	24371044	24371136	.	+	.	Parent=Os07t0597500-01
Chr07	irgsp1_rep	three_prime_UTR	24371286	24371467	.	+	.	Parent=Os07t0597500-01
Chr07	irgsp1_rep	mRNA	24384408	24386588	.	+	.	ID=Os07t0598000-01;Name=Os07t0598000-01;Locus_id=Os07g0598000;Note=Similar to NADPH HC toxin reductase (Fragment).;Transcript_evidence=AK070781 (DDBJ%2C Best hit);ORF_evidence=B0FYX0 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023068M23;Expression=AK070781;TENOR=Os07t0598000-01;KEGG=Os07t0598000-01
Chr07	irgsp1_rep	five_prime_UTR	24384408	24384487	.	+	.	Parent=Os07t0598000-01
Chr07	irgsp1_rep	CDS	24384488	24384599	.	+	0	Parent=Os07t0598000-01
Chr07	irgsp1_rep	CDS	24384706	24384872	.	+	2	Parent=Os07t0598000-01
Chr07	irgsp1_rep	CDS	24384967	24385191	.	+	0	Parent=Os07t0598000-01
Chr07	irgsp1_rep	CDS	24385713	24386101	.	+	0	Parent=Os07t0598000-01
Chr07	irgsp1_rep	CDS	24386342	24386474	.	+	1	Parent=Os07t0598000-01
Chr07	irgsp1_rep	three_prime_UTR	24386475	24386588	.	+	.	Parent=Os07t0598000-01
Chr07	irgsp1_rep	mRNA	24384436	24386661	.	+	.	ID=Os07t0598000-02;Name=Os07t0598000-02;Locus_id=Os07g0598000;Note=Similar to NADPH HC toxin reductase (Fragment).;Transcript_evidence=AK106089 (DDBJ%2C Best hit);ORF_evidence=B0FYX0 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-207-B06;TENOR=Os07t0598000-02;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	24384436	24384487	.	+	.	Parent=Os07t0598000-02
Chr07	irgsp1_rep	CDS	24384488	24384599	.	+	0	Parent=Os07t0598000-02
Chr07	irgsp1_rep	CDS	24384706	24384872	.	+	2	Parent=Os07t0598000-02
Chr07	irgsp1_rep	CDS	24384967	24385191	.	+	0	Parent=Os07t0598000-02
Chr07	irgsp1_rep	CDS	24385713	24386101	.	+	0	Parent=Os07t0598000-02
Chr07	irgsp1_rep	CDS	24386342	24386474	.	+	1	Parent=Os07t0598000-02
Chr07	irgsp1_rep	three_prime_UTR	24386475	24386661	.	+	.	Parent=Os07t0598000-02
Chr07	irgsp1_rep	mRNA	24389154	24393592	.	+	.	ID=Os07t0598100-01;Name=Os07t0598100-01;Locus_id=Os07g0598100;Note=Similar to Hydroxyproline-rich glycoprotein DZ-HRGP precursor.;Transcript_evidence=AK068136 (DDBJ%2C Best hit);ORF_evidence=NP_197043.1 (RefSeq);GO=Biological Process: RNA processing (GO:0006396),Molecular Function: RNA binding (GO:0003723),Molecular Function: RNA methyltransferase activity (GO:0008173);InterPro=tRNA/rRNA methyltransferase%2C SpoU (IPR001537);NIAS_FLcDNA=J013134J21;Expression=AK068136;TENOR=Os07t0598100-01;KEGG=Os07t0598100-01
Chr07	irgsp1_rep	five_prime_UTR	24389154	24389325	.	+	.	Parent=Os07t0598100-01
Chr07	irgsp1_rep	CDS	24389326	24389879	.	+	0	Parent=Os07t0598100-01
Chr07	irgsp1_rep	CDS	24390547	24390685	.	+	1	Parent=Os07t0598100-01
Chr07	irgsp1_rep	CDS	24391214	24391275	.	+	0	Parent=Os07t0598100-01
Chr07	irgsp1_rep	CDS	24391720	24391858	.	+	1	Parent=Os07t0598100-01
Chr07	irgsp1_rep	CDS	24392272	24392409	.	+	0	Parent=Os07t0598100-01
Chr07	irgsp1_rep	three_prime_UTR	24392410	24392527	.	+	.	Parent=Os07t0598100-01
Chr07	irgsp1_rep	three_prime_UTR	24393189	24393592	.	+	.	Parent=Os07t0598100-01
Chr07	irgsp1_rep	mRNA	24396230	24400772	.	+	.	ID=Os07t0598200-01;Name=Os07t0598200-01;Locus_id=Os07g0598200;Oryzabase Gene Symbol Synonym(s)=Os_F0793;Note=Similar to Circadian clock coupling factor ZGT.;Transcript_evidence=AK066942 (DDBJ%2C Best hit);ORF_evidence=B4F853 (UniProt);NIAS_FLcDNA=J013088D22;Oryzabase=17519;Expression=AK066942;TENOR=Os07t0598200-01;KEGG=Os07t0598200-01
Chr07	irgsp1_rep	five_prime_UTR	24396230	24396474	.	+	.	Parent=Os07t0598200-01
Chr07	irgsp1_rep	five_prime_UTR	24396806	24396862	.	+	.	Parent=Os07t0598200-01
Chr07	irgsp1_rep	CDS	24396863	24397609	.	+	0	Parent=Os07t0598200-01
Chr07	irgsp1_rep	three_prime_UTR	24397610	24397629	.	+	.	Parent=Os07t0598200-01
Chr07	irgsp1_rep	three_prime_UTR	24400427	24400772	.	+	.	Parent=Os07t0598200-01
Chr07	irgsp1_rep	mRNA	24403350	24406814	.	+	.	ID=Os07t0598300-01;Name=Os07t0598300-01;Locus_id=Os07g0598300;Note=Hypothetical conserved gene.;Transcript_evidence=AK101648 (DDBJ%2C Best hit);ORF_evidence=Q6ZJE4 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP binding (GO:0005524);InterPro=SNF2-related (IPR000330),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J033056B13;Expression=AK101648;TENOR=Os07t0598300-01;KEGG=Os07t0598300-01 (EC:3.6.1.-)
Chr07	irgsp1_rep	five_prime_UTR	24403350	24403390	.	+	.	Parent=Os07t0598300-01
Chr07	irgsp1_rep	CDS	24403391	24403741	.	+	0	Parent=Os07t0598300-01
Chr07	irgsp1_rep	CDS	24404611	24404946	.	+	0	Parent=Os07t0598300-01
Chr07	irgsp1_rep	CDS	24405369	24405501	.	+	0	Parent=Os07t0598300-01
Chr07	irgsp1_rep	CDS	24406448	24406713	.	+	2	Parent=Os07t0598300-01
Chr07	irgsp1_rep	three_prime_UTR	24406714	24406814	.	+	.	Parent=Os07t0598300-01
Chr07	irgsp1_rep	mRNA	24403367	24415850	.	+	.	ID=Os07t0598300-02;Name=Os07t0598300-02;Locus_id=Os07g0598300;Note=Hypothetical conserved gene.;Transcript_evidence=AK122151 (DDBJ%2C Best hit);ORF_evidence=B9FY90 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: helicase activity (GO:0004386),Molecular Function: endonuclease activity (GO:0004519),Molecular Function: ATP binding (GO:0005524);InterPro=SNF2-related (IPR000330),Helicase%2C C-terminal (IPR001650),HNH endonuclease (IPR002711),HNH nuclease (IPR003615),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J033142K22;Expression=AK122151;TENOR=Os07t0598300-02;KEGG=Os07t0598300-02
Chr07	irgsp1_rep	five_prime_UTR	24403367	24403390	.	+	.	Parent=Os07t0598300-02
Chr07	irgsp1_rep	CDS	24403391	24403741	.	+	0	Parent=Os07t0598300-02
Chr07	irgsp1_rep	CDS	24404611	24404946	.	+	0	Parent=Os07t0598300-02
Chr07	irgsp1_rep	CDS	24405369	24405501	.	+	0	Parent=Os07t0598300-02
Chr07	irgsp1_rep	CDS	24406448	24406623	.	+	2	Parent=Os07t0598300-02
Chr07	irgsp1_rep	CDS	24406996	24407069	.	+	0	Parent=Os07t0598300-02
Chr07	irgsp1_rep	CDS	24407684	24407719	.	+	1	Parent=Os07t0598300-02
Chr07	irgsp1_rep	CDS	24407796	24407886	.	+	1	Parent=Os07t0598300-02
Chr07	irgsp1_rep	CDS	24408371	24408430	.	+	0	Parent=Os07t0598300-02
Chr07	irgsp1_rep	CDS	24408850	24409042	.	+	0	Parent=Os07t0598300-02
Chr07	irgsp1_rep	CDS	24409906	24410102	.	+	2	Parent=Os07t0598300-02
Chr07	irgsp1_rep	CDS	24411015	24411116	.	+	0	Parent=Os07t0598300-02
Chr07	irgsp1_rep	CDS	24411244	24411354	.	+	0	Parent=Os07t0598300-02
Chr07	irgsp1_rep	CDS	24411990	24412055	.	+	0	Parent=Os07t0598300-02
Chr07	irgsp1_rep	CDS	24412142	24412240	.	+	0	Parent=Os07t0598300-02
Chr07	irgsp1_rep	CDS	24412767	24412854	.	+	0	Parent=Os07t0598300-02
Chr07	irgsp1_rep	CDS	24412960	24413087	.	+	2	Parent=Os07t0598300-02
Chr07	irgsp1_rep	CDS	24413205	24413336	.	+	0	Parent=Os07t0598300-02
Chr07	irgsp1_rep	CDS	24413412	24413501	.	+	0	Parent=Os07t0598300-02
Chr07	irgsp1_rep	CDS	24413631	24413939	.	+	0	Parent=Os07t0598300-02
Chr07	irgsp1_rep	CDS	24414467	24414651	.	+	0	Parent=Os07t0598300-02
Chr07	irgsp1_rep	CDS	24414741	24414843	.	+	1	Parent=Os07t0598300-02
Chr07	irgsp1_rep	CDS	24414987	24415132	.	+	0	Parent=Os07t0598300-02
Chr07	irgsp1_rep	CDS	24415328	24415407	.	+	1	Parent=Os07t0598300-02
Chr07	irgsp1_rep	CDS	24415481	24415683	.	+	2	Parent=Os07t0598300-02
Chr07	irgsp1_rep	three_prime_UTR	24415684	24415850	.	+	.	Parent=Os07t0598300-02
Chr07	irgsp1_rep	mRNA	24403414	24416683	.	+	.	ID=Os07t0598300-03;Name=Os07t0598300-03;Locus_id=Os07g0598300;Note=DEAD-like helicase%2C N-terminal domain containing protein.;Transcript_evidence=AK073674 (DDBJ%2C Best hit);ORF_evidence=B9FY90 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: helicase activity (GO:0004386),Molecular Function: endonuclease activity (GO:0004519),Molecular Function: ATP binding (GO:0005524);InterPro=SNF2-related (IPR000330),Helicase%2C C-terminal (IPR001650),HNH endonuclease (IPR002711),HNH nuclease (IPR003615),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J033047B15;Expression=AK073674;TENOR=Os07t0598300-03;KEGG=Os07t0598300-03
Chr07	irgsp1_rep	five_prime_UTR	24403414	24403414	.	+	.	Parent=Os07t0598300-03
Chr07	irgsp1_rep	CDS	24403415	24403741	.	+	0	Parent=Os07t0598300-03
Chr07	irgsp1_rep	CDS	24404611	24404946	.	+	0	Parent=Os07t0598300-03
Chr07	irgsp1_rep	CDS	24405369	24405501	.	+	0	Parent=Os07t0598300-03
Chr07	irgsp1_rep	CDS	24406448	24406623	.	+	2	Parent=Os07t0598300-03
Chr07	irgsp1_rep	CDS	24406996	24407069	.	+	0	Parent=Os07t0598300-03
Chr07	irgsp1_rep	CDS	24407684	24407719	.	+	1	Parent=Os07t0598300-03
Chr07	irgsp1_rep	CDS	24407796	24407886	.	+	1	Parent=Os07t0598300-03
Chr07	irgsp1_rep	CDS	24408371	24408430	.	+	0	Parent=Os07t0598300-03
Chr07	irgsp1_rep	CDS	24408850	24409042	.	+	0	Parent=Os07t0598300-03
Chr07	irgsp1_rep	CDS	24409906	24410102	.	+	2	Parent=Os07t0598300-03
Chr07	irgsp1_rep	CDS	24411015	24411116	.	+	0	Parent=Os07t0598300-03
Chr07	irgsp1_rep	CDS	24411244	24411354	.	+	0	Parent=Os07t0598300-03
Chr07	irgsp1_rep	CDS	24411990	24412055	.	+	0	Parent=Os07t0598300-03
Chr07	irgsp1_rep	CDS	24412142	24412240	.	+	0	Parent=Os07t0598300-03
Chr07	irgsp1_rep	CDS	24412767	24412854	.	+	0	Parent=Os07t0598300-03
Chr07	irgsp1_rep	CDS	24412960	24413087	.	+	2	Parent=Os07t0598300-03
Chr07	irgsp1_rep	CDS	24413205	24413336	.	+	0	Parent=Os07t0598300-03
Chr07	irgsp1_rep	CDS	24413412	24413501	.	+	0	Parent=Os07t0598300-03
Chr07	irgsp1_rep	CDS	24413631	24413939	.	+	0	Parent=Os07t0598300-03
Chr07	irgsp1_rep	CDS	24414467	24414651	.	+	0	Parent=Os07t0598300-03
Chr07	irgsp1_rep	CDS	24414741	24414843	.	+	1	Parent=Os07t0598300-03
Chr07	irgsp1_rep	CDS	24414987	24415132	.	+	0	Parent=Os07t0598300-03
Chr07	irgsp1_rep	CDS	24415328	24415407	.	+	1	Parent=Os07t0598300-03
Chr07	irgsp1_rep	CDS	24415481	24415626	.	+	2	Parent=Os07t0598300-03
Chr07	irgsp1_rep	CDS	24416193	24416261	.	+	0	Parent=Os07t0598300-03
Chr07	irgsp1_rep	three_prime_UTR	24416262	24416683	.	+	.	Parent=Os07t0598300-03
Chr07	irgsp1_rep	mRNA	24417383	24419441	.	-	.	ID=Os07t0598400-01;Name=Os07t0598400-01;Locus_id=Os07g0598400;Note=Glycoside hydrolase family 79%2C N-terminal protein.;Transcript_evidence=AK072279 (DDBJ%2C Best hit);ORF_evidence=NP_851238.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C acting on glycosyl bonds (GO:0016798),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 79 (IPR005199),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J023018A16;Expression=AK072279;TENOR=Os07t0598400-01;KEGG=Os07t0598400-01
Chr07	irgsp1_rep	five_prime_UTR	24419399	24419441	.	-	.	Parent=Os07t0598400-01
Chr07	irgsp1_rep	CDS	24419165	24419398	.	-	0	Parent=Os07t0598400-01
Chr07	irgsp1_rep	CDS	24419018	24419054	.	-	0	Parent=Os07t0598400-01
Chr07	irgsp1_rep	CDS	24418758	24418941	.	-	2	Parent=Os07t0598400-01
Chr07	irgsp1_rep	CDS	24417532	24418666	.	-	1	Parent=Os07t0598400-01
Chr07	irgsp1_rep	three_prime_UTR	24417383	24417531	.	-	.	Parent=Os07t0598400-01
Chr07	irgsp1_rep	mRNA	24418124	24419320	.	+	.	ID=Os07t0598450-00;Name=Os07t0598450-00;Locus_id=Os07g0598450;Note=Hypothetical protein.;Transcript_evidence=BT085373 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0598450-00
Chr07	irgsp1_rep	five_prime_UTR	24418124	24418125	.	+	.	Parent=Os07t0598450-00
Chr07	irgsp1_rep	CDS	24418126	24418660	.	+	0	Parent=Os07t0598450-00
Chr07	irgsp1_rep	CDS	24418749	24418753	.	+	2	Parent=Os07t0598450-00
Chr07	irgsp1_rep	three_prime_UTR	24418754	24418933	.	+	.	Parent=Os07t0598450-00
Chr07	irgsp1_rep	three_prime_UTR	24419123	24419320	.	+	.	Parent=Os07t0598450-00
Chr07	irgsp1_rep	mRNA	24419887	24422315	.	-	.	ID=Os07t0598500-01;Name=Os07t0598500-01;Locus_id=Os07g0598500;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK073214 (DDBJ%2C Best hit);ORF_evidence=Q2HUF5 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033015N07;Expression=AK073214;TENOR=Os07t0598500-01;KEGG=Os07t0598500-01
Chr07	irgsp1_rep	five_prime_UTR	24422306	24422315	.	-	.	Parent=Os07t0598500-01
Chr07	irgsp1_rep	CDS	24421955	24422305	.	-	0	Parent=Os07t0598500-01
Chr07	irgsp1_rep	CDS	24420162	24421331	.	-	0	Parent=Os07t0598500-01
Chr07	irgsp1_rep	three_prime_UTR	24419887	24420161	.	-	.	Parent=Os07t0598500-01
Chr07	irgsp1_rep	mRNA	24429316	24432214	.	-	.	ID=Os07t0598700-00;Name=Os07t0598700-00;Locus_id=Os07g0598700;Note=Hypothetical conserved gene.;Transcript_evidence=BT036074 (DDBJ);ORF_evidence=NP_001060184.1 (RefSeq);TENOR=Os07t0598700-00;KEGG=Os07t0598700-00
Chr07	irgsp1_rep	CDS	24432041	24432214	.	-	0	Parent=Os07t0598700-00
Chr07	irgsp1_rep	CDS	24431126	24431228	.	-	0	Parent=Os07t0598700-00
Chr07	irgsp1_rep	CDS	24430430	24431031	.	-	2	Parent=Os07t0598700-00
Chr07	irgsp1_rep	CDS	24430068	24430235	.	-	0	Parent=Os07t0598700-00
Chr07	irgsp1_rep	CDS	24429753	24429863	.	-	0	Parent=Os07t0598700-00
Chr07	irgsp1_rep	CDS	24429439	24429630	.	-	0	Parent=Os07t0598700-00
Chr07	irgsp1_rep	three_prime_UTR	24429316	24429438	.	-	.	Parent=Os07t0598700-00
Chr07	irgsp1_rep	mRNA	24438591	24440475	.	+	.	ID=Os07t0598800-00;Name=Os07t0598800-00;Locus_id=Os07g0598800;CGSNL Gene Symbol=DLN194;CGSNL Gene Name=DLN REPRESSOR 194;Oryzabase Gene Symbol Synonym(s)=OsDLN194;Oryzabase Gene Name Synonym(s)=DLN repressor 194%2C DLN motif protein 194;Note=Hypothetical conserved gene.;Transcript_evidence=CT836133 (DDBJ%2C Best hit);ORF_evidence=Q8H5B0 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);Oryzabase=23219;TENOR=Os07t0598800-00;KEGG=Os07t0598800-00
Chr07	irgsp1_rep	five_prime_UTR	24438591	24438851	.	+	.	Parent=Os07t0598800-00
Chr07	irgsp1_rep	CDS	24438852	24439355	.	+	0	Parent=Os07t0598800-00
Chr07	irgsp1_rep	CDS	24439362	24440123	.	+	0	Parent=Os07t0598800-00
Chr07	irgsp1_rep	three_prime_UTR	24440124	24440475	.	+	.	Parent=Os07t0598800-00
Chr07	irgsp1_rep	mRNA	24446289	24451289	.	+	.	ID=Os07t0598900-01;Name=Os07t0598900-01;Locus_id=Os07g0598900;Note=Similar to T1K7.11 protein.;Transcript_evidence=AK102627 (DDBJ%2C Best hit);ORF_evidence=Q9FZD7 (UniProt);InterPro=Cobalamin (vitamin B12) biosynthesis CobW-like (IPR003495),Cobalamin (vitamin B12) biosynthesis CobW-like%2C C-terminal (IPR011629);NIAS_FLcDNA=J033099K03;TENOR=Os07t0598900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	24446289	24446344	.	+	.	Parent=Os07t0598900-01
Chr07	irgsp1_rep	CDS	24446345	24446488	.	+	0	Parent=Os07t0598900-01
Chr07	irgsp1_rep	CDS	24447262	24447479	.	+	0	Parent=Os07t0598900-01
Chr07	irgsp1_rep	CDS	24447920	24448034	.	+	1	Parent=Os07t0598900-01
Chr07	irgsp1_rep	CDS	24448185	24448274	.	+	0	Parent=Os07t0598900-01
Chr07	irgsp1_rep	CDS	24448437	24448595	.	+	0	Parent=Os07t0598900-01
Chr07	irgsp1_rep	CDS	24449042	24449161	.	+	0	Parent=Os07t0598900-01
Chr07	irgsp1_rep	CDS	24449753	24449863	.	+	0	Parent=Os07t0598900-01
Chr07	irgsp1_rep	CDS	24449950	24450031	.	+	0	Parent=Os07t0598900-01
Chr07	irgsp1_rep	CDS	24450111	24450166	.	+	2	Parent=Os07t0598900-01
Chr07	irgsp1_rep	three_prime_UTR	24450167	24450195	.	+	.	Parent=Os07t0598900-01
Chr07	irgsp1_rep	three_prime_UTR	24450934	24451289	.	+	.	Parent=Os07t0598900-01
Chr07	irgsp1_rep	mRNA	24446289	24451345	.	+	.	ID=Os07t0598900-02;Name=Os07t0598900-02;Locus_id=Os07g0598900;Note=Hypothetical conserved gene.;Transcript_evidence=AK106521 (DDBJ%2C Best hit);ORF_evidence=Q7XAM3 (UniProt);InterPro=Cobalamin (vitamin B12) biosynthesis CobW-like (IPR003495);NIAS_FLcDNA=002-107-C11;Expression=AK106521;TENOR=Os07t0598900-02;KEGG=Os07t0598900-02
Chr07	irgsp1_rep	five_prime_UTR	24446289	24446344	.	+	.	Parent=Os07t0598900-02
Chr07	irgsp1_rep	CDS	24446345	24446488	.	+	0	Parent=Os07t0598900-02
Chr07	irgsp1_rep	CDS	24447262	24447479	.	+	0	Parent=Os07t0598900-02
Chr07	irgsp1_rep	CDS	24447920	24448034	.	+	1	Parent=Os07t0598900-02
Chr07	irgsp1_rep	CDS	24448185	24448274	.	+	0	Parent=Os07t0598900-02
Chr07	irgsp1_rep	CDS	24448437	24448607	.	+	0	Parent=Os07t0598900-02
Chr07	irgsp1_rep	three_prime_UTR	24448608	24450031	.	+	.	Parent=Os07t0598900-02
Chr07	irgsp1_rep	three_prime_UTR	24450111	24450195	.	+	.	Parent=Os07t0598900-02
Chr07	irgsp1_rep	three_prime_UTR	24450934	24451345	.	+	.	Parent=Os07t0598900-02
Chr07	irgsp1_rep	mRNA	24451634	24455574	.	+	.	ID=Os07t0599000-01;Name=Os07t0599000-01;Locus_id=Os07g0599000;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK069667 (DDBJ%2C Best hit);ORF_evidence=XP_002893403.1 (RefSeq);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J023027N04;Expression=AK069667;TENOR=Os07t0599000-01;KEGG=Os07t0599000-01
Chr07	irgsp1_rep	five_prime_UTR	24451634	24451701	.	+	.	Parent=Os07t0599000-01
Chr07	irgsp1_rep	CDS	24451702	24452327	.	+	0	Parent=Os07t0599000-01
Chr07	irgsp1_rep	CDS	24452906	24453122	.	+	1	Parent=Os07t0599000-01
Chr07	irgsp1_rep	CDS	24453321	24453800	.	+	0	Parent=Os07t0599000-01
Chr07	irgsp1_rep	CDS	24454381	24454587	.	+	0	Parent=Os07t0599000-01
Chr07	irgsp1_rep	CDS	24454692	24454829	.	+	0	Parent=Os07t0599000-01
Chr07	irgsp1_rep	CDS	24454897	24455096	.	+	0	Parent=Os07t0599000-01
Chr07	irgsp1_rep	CDS	24455231	24455234	.	+	1	Parent=Os07t0599000-01
Chr07	irgsp1_rep	three_prime_UTR	24455235	24455574	.	+	.	Parent=Os07t0599000-01
Chr07	irgsp1_rep	mRNA	24456130	24459917	.	-	.	ID=Os07t0599100-00;Name=Os07t0599100-00;Locus_id=Os07g0599100;Note=Hypothetical conserved gene.;Transcript_evidence=tplb0011j14 (Wheat FLcDNA);ORF_evidence=C0LHV1 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);Oryzabase=14967;TENOR=Os07t0599100-00;KEGG=Os07t0599100-00
Chr07	irgsp1_rep	five_prime_UTR	24459911	24459917	.	-	.	Parent=Os07t0599100-00
Chr07	irgsp1_rep	CDS	24459489	24459910	.	-	0	Parent=Os07t0599100-00
Chr07	irgsp1_rep	CDS	24456130	24458653	.	-	1	Parent=Os07t0599100-00
Chr07	irgsp1_rep	mRNA	24457010	24459903	.	+	.	ID=Os07t0599150-00;Name=Os07t0599150-00;Locus_id=Os07g0599150;Note=Hypothetical protein.;Transcript_evidence=tplb0031m13 (Wheat FLcDNA);ORF_evidence=GeneMark;TENOR=Os07t0599150-00
Chr07	irgsp1_rep	five_prime_UTR	24457010	24458195	.	+	.	Parent=Os07t0599150-00
Chr07	irgsp1_rep	five_prime_UTR	24458256	24458557	.	+	.	Parent=Os07t0599150-00
Chr07	irgsp1_rep	five_prime_UTR	24459420	24459553	.	+	.	Parent=Os07t0599150-00
Chr07	irgsp1_rep	CDS	24459554	24459903	.	+	0	Parent=Os07t0599150-00
Chr07	irgsp1_rep	mRNA	24460862	24462436	.	-	.	ID=Os07t0599201-00;Name=Os07t0599201-00;Locus_id=Os07g0599201;Note=Hypothetical conserved gene.;Transcript_evidence=BT033877 (DDBJ);ORF_evidence=A3BLV8 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);TENOR=Os07t0599201-00;KEGG=Os07t0599201-00
Chr07	irgsp1_rep	CDS	24460892	24462436	.	-	0	Parent=Os07t0599201-00
Chr07	irgsp1_rep	three_prime_UTR	24460862	24460891	.	-	.	Parent=Os07t0599201-00
Chr07	irgsp1_rep	mRNA	24466706	24467385	.	-	.	ID=Os07t0599300-01;Name=Os07t0599300-01;Locus_id=Os07g0599300;Oryzabase Gene Symbol Synonym(s)=App1%2C OsApp1;Note=Hypothetical protein.;Transcript_evidence=AK107490 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=002-129-D01;Oryzabase=23613;Expression=AK107490;TENOR=Os07t0599300-01;KEGG=Os07t0599300-01
Chr07	irgsp1_rep	five_prime_UTR	24467309	24467385	.	-	.	Parent=Os07t0599300-01
Chr07	irgsp1_rep	CDS	24466850	24467308	.	-	0	Parent=Os07t0599300-01
Chr07	irgsp1_rep	three_prime_UTR	24466706	24466849	.	-	.	Parent=Os07t0599300-01
Chr07	irgsp1_rep	mRNA	24470110	24471114	.	-	.	ID=Os07t0599500-01;Name=Os07t0599500-01;Locus_id=Os07g0599500;Note=Hypothetical protein.;Transcript_evidence=AK068696 (DDBJ%2C Best hit),AK106010 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J013162L16,001-206-B01;Expression=AK068696;TENOR=Os07t0599500-01;KEGG=Os07t0599500-01
Chr07	irgsp1_rep	five_prime_UTR	24471042	24471114	.	-	.	Parent=Os07t0599500-01
Chr07	irgsp1_rep	CDS	24470415	24471041	.	-	0	Parent=Os07t0599500-01
Chr07	irgsp1_rep	three_prime_UTR	24470110	24470414	.	-	.	Parent=Os07t0599500-01
Chr07	irgsp1_rep	mRNA	24472509	24473579	.	-	.	ID=Os07t0599600-02;Name=Os07t0599600-02;Locus_id=Os07g0599600;Note=Hypothetical protein.;Transcript_evidence=AK105918 (DDBJ%2C Best hit),AK070771 (DDBJ%2C Best hit),AK106214 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=001-204-H12,J023069L14,001-208-G11;Expression=AK106214;TENOR=Os07t0599600-02;KEGG=Os07t0599600-02
Chr07	irgsp1_rep	five_prime_UTR	24473529	24473579	.	-	.	Parent=Os07t0599600-02
Chr07	irgsp1_rep	CDS	24472737	24473528	.	-	0	Parent=Os07t0599600-02
Chr07	irgsp1_rep	three_prime_UTR	24472509	24472736	.	-	.	Parent=Os07t0599600-02
Chr07	irgsp1_rep	mRNA	24477380	24478153	.	-	.	ID=Os07t0599700-01;Name=Os07t0599700-01;Locus_id=Os07g0599700;Note=Similar to Surface protein PspC.;Transcript_evidence=AK065663 (DDBJ%2C Best hit);ORF_evidence=A2YNE2 (UniProt);NIAS_FLcDNA=J013040D08;Expression=AK065663;TENOR=Os07t0599700-01;KEGG=Os07t0599700-01
Chr07	irgsp1_rep	five_prime_UTR	24478042	24478153	.	-	.	Parent=Os07t0599700-01
Chr07	irgsp1_rep	CDS	24477640	24478041	.	-	0	Parent=Os07t0599700-01
Chr07	irgsp1_rep	three_prime_UTR	24477380	24477639	.	-	.	Parent=Os07t0599700-01
Chr07	irgsp1_rep	mRNA	24481260	24481937	.	-	.	ID=Os07t0599900-01;Name=Os07t0599900-01;Locus_id=Os07g0599900;Note=Conserved hypothetical protein.;Transcript_evidence=AK062673 (DDBJ%2C Best hit);ORF_evidence=A3BLW3 (UniProt);NIAS_FLcDNA=001-105-G06;Expression=AK062673;TENOR=Os07t0599900-01;KEGG=Os07t0599900-01
Chr07	irgsp1_rep	five_prime_UTR	24481869	24481937	.	-	.	Parent=Os07t0599900-01
Chr07	irgsp1_rep	CDS	24481476	24481868	.	-	0	Parent=Os07t0599900-01
Chr07	irgsp1_rep	three_prime_UTR	24481260	24481475	.	-	.	Parent=Os07t0599900-01
Chr07	irgsp1_rep	mRNA	24483487	24484920	.	-	.	ID=Os07t0600000-01;Name=Os07t0600000-01;Locus_id=Os07g0600000;Note=Conserved hypothetical protein.;Transcript_evidence=AK105907 (DDBJ%2C Best hit);ORF_evidence=A3BLW3 (UniProt);NIAS_FLcDNA=001-204-G04;Expression=AK105907;TENOR=Os07t0600000-01;KEGG=Os07t0600000-01
Chr07	irgsp1_rep	five_prime_UTR	24484849	24484920	.	-	.	Parent=Os07t0600000-01
Chr07	irgsp1_rep	CDS	24483820	24484848	.	-	0	Parent=Os07t0600000-01
Chr07	irgsp1_rep	three_prime_UTR	24483487	24483819	.	-	.	Parent=Os07t0600000-01
Chr07	irgsp1_rep	mRNA	24487821	24488449	.	-	.	ID=Os07t0600200-01;Name=Os07t0600200-01;Locus_id=Os07g0600200;Note=Conserved hypothetical protein.;Transcript_evidence=AK105814 (DDBJ%2C Best hit),AK062681 (DDBJ%2C Best hit);ORF_evidence=A2YNE5 (UniProt);NIAS_FLcDNA=001-203-C08,001-105-H05;Expression=AK105814;TENOR=Os07t0600200-01;KEGG=Os07t0600200-01
Chr07	irgsp1_rep	five_prime_UTR	24488371	24488449	.	-	.	Parent=Os07t0600200-01
Chr07	irgsp1_rep	CDS	24488029	24488370	.	-	0	Parent=Os07t0600200-01
Chr07	irgsp1_rep	three_prime_UTR	24487821	24488028	.	-	.	Parent=Os07t0600200-01
Chr07	irgsp1_rep	mRNA	24490701	24492232	.	+	.	ID=Os07t0600300-00;Name=Os07t0600300-00;Locus_id=Os07g0600300;Note=Protein of unknown function DUF794%2C plant family protein.;Transcript_evidence=AK357136 (DDBJ);ORF_evidence=NP_568945.2 (RefSeq);InterPro=APO protein%2C plant (IPR008512),APO domain (IPR023342);TENOR=Os07t0600300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	24490701	24490975	.	+	.	Parent=Os07t0600300-00
Chr07	irgsp1_rep	CDS	24490976	24492232	.	+	0	Parent=Os07t0600300-00
Chr07	irgsp1_rep	mRNA	24493763	24497557	.	-	.	ID=Os07t0600400-01;Name=Os07t0600400-01;Locus_id=Os07g0600400;Oryzabase Gene Symbol Synonym(s)=OsWD40-147;Note=WD40/YVTN repeat-like domain containing protein.;Transcript_evidence=AK099418 (DDBJ%2C Best hit);ORF_evidence=NP_197059.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),NLE (IPR012972),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J013006J17;Oryzabase=10828;Expression=AK099418;TENOR=Os07t0600400-01;KEGG=Os07t0600400-01
Chr07	irgsp1_rep	five_prime_UTR	24497490	24497557	.	-	.	Parent=Os07t0600400-01
Chr07	irgsp1_rep	CDS	24497330	24497489	.	-	0	Parent=Os07t0600400-01
Chr07	irgsp1_rep	CDS	24497138	24497238	.	-	2	Parent=Os07t0600400-01
Chr07	irgsp1_rep	CDS	24496923	24497029	.	-	0	Parent=Os07t0600400-01
Chr07	irgsp1_rep	CDS	24496187	24496222	.	-	1	Parent=Os07t0600400-01
Chr07	irgsp1_rep	CDS	24495975	24496057	.	-	1	Parent=Os07t0600400-01
Chr07	irgsp1_rep	CDS	24495795	24495859	.	-	2	Parent=Os07t0600400-01
Chr07	irgsp1_rep	CDS	24495584	24495688	.	-	0	Parent=Os07t0600400-01
Chr07	irgsp1_rep	CDS	24495362	24495496	.	-	0	Parent=Os07t0600400-01
Chr07	irgsp1_rep	CDS	24494929	24495072	.	-	0	Parent=Os07t0600400-01
Chr07	irgsp1_rep	CDS	24494490	24494598	.	-	0	Parent=Os07t0600400-01
Chr07	irgsp1_rep	CDS	24494277	24494413	.	-	2	Parent=Os07t0600400-01
Chr07	irgsp1_rep	CDS	24494142	24494177	.	-	0	Parent=Os07t0600400-01
Chr07	irgsp1_rep	CDS	24493978	24494070	.	-	0	Parent=Os07t0600400-01
Chr07	irgsp1_rep	three_prime_UTR	24493763	24493977	.	-	.	Parent=Os07t0600400-01
Chr07	irgsp1_rep	mRNA	24505215	24508630	.	+	.	ID=Os07t0600700-01;Name=Os07t0600700-01;Locus_id=Os07g0600700;Note=X8 domain containing protein.;Transcript_evidence=AK111970 (DDBJ%2C Best hit);ORF_evidence=NP_001148400.1 (RefSeq);InterPro=X8 (IPR012946);NIAS_FLcDNA=006-302-C09;Expression=AK111970;TENOR=Os07t0600700-01;KEGG=Os07t0600700-01
Chr07	irgsp1_rep	five_prime_UTR	24505215	24505387	.	+	.	Parent=Os07t0600700-01
Chr07	irgsp1_rep	CDS	24505388	24505448	.	+	0	Parent=Os07t0600700-01
Chr07	irgsp1_rep	CDS	24506270	24506503	.	+	2	Parent=Os07t0600700-01
Chr07	irgsp1_rep	CDS	24507315	24507348	.	+	2	Parent=Os07t0600700-01
Chr07	irgsp1_rep	CDS	24507952	24508207	.	+	1	Parent=Os07t0600700-01
Chr07	irgsp1_rep	three_prime_UTR	24508208	24508630	.	+	.	Parent=Os07t0600700-01
Chr07	irgsp1_rep	mRNA	24505275	24508630	.	+	.	ID=Os07t0600700-02;Name=Os07t0600700-02;Locus_id=Os07g0600700;Note=X8 domain containing protein.;Transcript_evidence=AK111913 (DDBJ%2C Best hit),AK112017 (DDBJ%2C Best hit);ORF_evidence=NP_001148400.1 (RefSeq);InterPro=X8 (IPR012946);NIAS_FLcDNA=J033126J18,006-307-A05;TENOR=Os07t0600700-02
Chr07	irgsp1_rep	five_prime_UTR	24505275	24505387	.	+	.	Parent=Os07t0600700-02
Chr07	irgsp1_rep	CDS	24505388	24505448	.	+	0	Parent=Os07t0600700-02
Chr07	irgsp1_rep	CDS	24506270	24506503	.	+	2	Parent=Os07t0600700-02
Chr07	irgsp1_rep	CDS	24507315	24507348	.	+	2	Parent=Os07t0600700-02
Chr07	irgsp1_rep	CDS	24507952	24508207	.	+	1	Parent=Os07t0600700-02
Chr07	irgsp1_rep	three_prime_UTR	24508208	24508630	.	+	.	Parent=Os07t0600700-02
Chr07	irgsp1_rep	mRNA	24515344	24517707	.	-	.	ID=Os07t0601000-01;Name=Os07t0601000-01;Locus_id=Os07g0601000;Note=Similar to NADPH HC toxin reductase (Fragment).;Transcript_evidence=AK067272 (DDBJ%2C Best hit);ORF_evidence=B0FYX0 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013098D22;Expression=AK067272;TENOR=Os07t0601000-01;KEGG=Os07t0601000-01
Chr07	irgsp1_rep	five_prime_UTR	24517681	24517707	.	-	.	Parent=Os07t0601000-01
Chr07	irgsp1_rep	CDS	24517575	24517680	.	-	0	Parent=Os07t0601000-01
Chr07	irgsp1_rep	CDS	24517298	24517467	.	-	2	Parent=Os07t0601000-01
Chr07	irgsp1_rep	CDS	24516310	24516528	.	-	0	Parent=Os07t0601000-01
Chr07	irgsp1_rep	CDS	24515835	24516223	.	-	0	Parent=Os07t0601000-01
Chr07	irgsp1_rep	CDS	24515461	24515593	.	-	1	Parent=Os07t0601000-01
Chr07	irgsp1_rep	three_prime_UTR	24515344	24515460	.	-	.	Parent=Os07t0601000-01
Chr07	irgsp1_rep	mRNA	24517974	24527995	.	-	.	ID=Os07t0601100-01;Name=Os07t0601100-01;Locus_id=Os07g0601100;Oryzabase Gene Symbol Synonym(s)=DHFR;Oryzabase Gene Name Synonym(s)=dihydroflavonol 4-reductase;Note=Similar to NADPH HC toxin reductase (Fragment).;Transcript_evidence=AK062499 (DDBJ%2C Best hit);ORF_evidence=B0FYX0 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-104-A06;Oryzabase=16785;Expression=AK062499;TENOR=Os07t0601100-01;KEGG=Os07t0601100-01
Chr07	irgsp1_rep	five_prime_UTR	24527945	24527995	.	-	.	Parent=Os07t0601100-01
Chr07	irgsp1_rep	CDS	24527839	24527944	.	-	0	Parent=Os07t0601100-01
Chr07	irgsp1_rep	CDS	24527529	24527698	.	-	2	Parent=Os07t0601100-01
Chr07	irgsp1_rep	CDS	24519162	24519377	.	-	0	Parent=Os07t0601100-01
Chr07	irgsp1_rep	CDS	24518549	24518931	.	-	0	Parent=Os07t0601100-01
Chr07	irgsp1_rep	CDS	24518308	24518440	.	-	1	Parent=Os07t0601100-01
Chr07	irgsp1_rep	three_prime_UTR	24517974	24518307	.	-	.	Parent=Os07t0601100-01
Chr07	irgsp1_rep	mRNA	24555174	24556440	.	+	.	ID=Os07t0601600-00;Name=Os07t0601600-00;Locus_id=Os07g0601600;Oryzabase Gene Name Synonym(s)=NAD dependent epimerase/dehydratase;Note=Similar to VEP1 (VEIN PATTERNING 1)%3B binding / catalytic.;Transcript_evidence=BT038542 (DDBJ);ORF_evidence=D6N9X3 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NAD(P)-binding domain (IPR016040);Oryzabase=20297;TENOR=Os07t0601600-00;KEGG=Os07t0601600-00
Chr07	irgsp1_rep	CDS	24555174	24556406	.	+	0	Parent=Os07t0601600-00
Chr07	irgsp1_rep	three_prime_UTR	24556407	24556440	.	+	.	Parent=Os07t0601600-00
Chr07	irgsp1_rep	mRNA	24559575	24563938	.	-	.	ID=Os07t0601900-01;Name=Os07t0601900-01;Locus_id=Os07g0601900;Note=Similar to NADPH HC toxin reductase (Fragment).;Transcript_evidence=AK105572 (DDBJ%2C Best hit);ORF_evidence=B9FYA2 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-128-D03;Expression=AK105572;TENOR=Os07t0601900-01;KEGG=Os07t0601900-01
Chr07	irgsp1_rep	five_prime_UTR	24563897	24563938	.	-	.	Parent=Os07t0601900-01
Chr07	irgsp1_rep	CDS	24563776	24563896	.	-	0	Parent=Os07t0601900-01
Chr07	irgsp1_rep	CDS	24561547	24561716	.	-	2	Parent=Os07t0601900-01
Chr07	irgsp1_rep	CDS	24560566	24560949	.	-	0	Parent=Os07t0601900-01
Chr07	irgsp1_rep	three_prime_UTR	24559575	24560565	.	-	.	Parent=Os07t0601900-01
Chr07	irgsp1_rep	mRNA	24567545	24570285	.	-	.	ID=Os07t0602000-01;Name=Os07t0602000-01;Locus_id=Os07g0602000;Oryzabase Gene Symbol Synonym(s)=DHFR;Oryzabase Gene Name Synonym(s)=dihydroflavonol 4-reductase;Note=Similar to NADPH HC toxin reductase (Fragment).;Transcript_evidence=AK071832 (DDBJ%2C Best hit);ORF_evidence=B0FYX0 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023121D11;Oryzabase=16786;Expression=AK071832;TENOR=Os07t0602000-01;KEGG=Os07t0602000-01
Chr07	irgsp1_rep	five_prime_UTR	24570210	24570285	.	-	.	Parent=Os07t0602000-01
Chr07	irgsp1_rep	CDS	24570095	24570209	.	-	0	Parent=Os07t0602000-01
Chr07	irgsp1_rep	CDS	24569825	24569994	.	-	2	Parent=Os07t0602000-01
Chr07	irgsp1_rep	CDS	24569217	24569429	.	-	0	Parent=Os07t0602000-01
Chr07	irgsp1_rep	CDS	24568075	24568466	.	-	0	Parent=Os07t0602000-01
Chr07	irgsp1_rep	CDS	24567676	24567808	.	-	1	Parent=Os07t0602000-01
Chr07	irgsp1_rep	three_prime_UTR	24567545	24567675	.	-	.	Parent=Os07t0602000-01
Chr07	irgsp1_rep	mRNA	24575162	24578091	.	-	.	ID=Os07t0602050-00;Name=Os07t0602050-00;Locus_id=Os07g0602050;Note=NAD(P)-binding domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8B8D4 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NAD(P)-binding domain (IPR016040);TENOR=Os07t0602050-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	24577912	24578091	.	-	0	Parent=Os07t0602050-00
Chr07	irgsp1_rep	CDS	24577371	24577694	.	-	0	Parent=Os07t0602050-00
Chr07	irgsp1_rep	CDS	24576039	24576257	.	-	0	Parent=Os07t0602050-00
Chr07	irgsp1_rep	CDS	24575394	24575581	.	-	0	Parent=Os07t0602050-00
Chr07	irgsp1_rep	CDS	24575162	24575294	.	-	1	Parent=Os07t0602050-00
Chr07	irgsp1_rep	mRNA	24580091	24580806	.	-	.	ID=Os07t0602100-01;Name=Os07t0602100-01;Locus_id=Os07g0602100;Note=Conserved hypothetical protein.;Transcript_evidence=AK062687 (DDBJ%2C Best hit);ORF_evidence=B9FYA3 (UniProt);NIAS_FLcDNA=001-105-H11;Oryzabase=22058;TENOR=Os07t0602100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	24580637	24580806	.	-	0	Parent=Os07t0602100-01
Chr07	irgsp1_rep	CDS	24580522	24580531	.	-	1	Parent=Os07t0602100-01
Chr07	irgsp1_rep	three_prime_UTR	24580091	24580521	.	-	.	Parent=Os07t0602100-01
Chr07	irgsp1_rep	mRNA	24592035	24598353	.	+	.	ID=Os07t0602200-01;Name=Os07t0602200-01;Locus_id=Os07g0602200;Note=Similar to HDA1.;Transcript_evidence=AK111892 (DDBJ%2C Best hit);ORF_evidence=B6SH90 (UniProt);InterPro=Histone deacetylase superfamily (IPR000286),Histone deacetylase domain (IPR023801);NIAS_FLcDNA=J033079C01;Expression=AK111892;TENOR=Os07t0602200-01;KEGG=Os07t0602200-01 (EC:3.5.1.98)
Chr07	irgsp1_rep	five_prime_UTR	24592035	24592101	.	+	.	Parent=Os07t0602200-01
Chr07	irgsp1_rep	CDS	24592102	24592262	.	+	0	Parent=Os07t0602200-01
Chr07	irgsp1_rep	CDS	24592809	24593010	.	+	1	Parent=Os07t0602200-01
Chr07	irgsp1_rep	CDS	24593109	24593255	.	+	0	Parent=Os07t0602200-01
Chr07	irgsp1_rep	CDS	24593412	24593524	.	+	0	Parent=Os07t0602200-01
Chr07	irgsp1_rep	CDS	24594160	24594371	.	+	1	Parent=Os07t0602200-01
Chr07	irgsp1_rep	CDS	24594774	24594838	.	+	2	Parent=Os07t0602200-01
Chr07	irgsp1_rep	CDS	24595161	24595331	.	+	0	Parent=Os07t0602200-01
Chr07	irgsp1_rep	CDS	24595418	24595507	.	+	0	Parent=Os07t0602200-01
Chr07	irgsp1_rep	CDS	24596123	24596467	.	+	0	Parent=Os07t0602200-01
Chr07	irgsp1_rep	CDS	24596560	24596753	.	+	0	Parent=Os07t0602200-01
Chr07	irgsp1_rep	CDS	24596872	24597028	.	+	1	Parent=Os07t0602200-01
Chr07	irgsp1_rep	CDS	24597526	24597590	.	+	0	Parent=Os07t0602200-01
Chr07	irgsp1_rep	CDS	24597746	24597911	.	+	1	Parent=Os07t0602200-01
Chr07	irgsp1_rep	three_prime_UTR	24597912	24598353	.	+	.	Parent=Os07t0602200-01
Chr07	irgsp1_rep	mRNA	24611198	24614117	.	-	.	ID=Os07t0602600-01;Name=Os07t0602600-01;Locus_id=Os07g0602600;Note=Similar to RNA binding protein.;Transcript_evidence=AK065696 (DDBJ%2C Best hit);ORF_evidence=NP_001149776.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013035K23;Expression=AK065696;TENOR=Os07t0602600-01;KEGG=Os07t0602600-01
Chr07	irgsp1_rep	five_prime_UTR	24614000	24614117	.	-	.	Parent=Os07t0602600-01
Chr07	irgsp1_rep	five_prime_UTR	24613690	24613720	.	-	.	Parent=Os07t0602600-01
Chr07	irgsp1_rep	CDS	24613581	24613689	.	-	0	Parent=Os07t0602600-01
Chr07	irgsp1_rep	CDS	24613421	24613489	.	-	2	Parent=Os07t0602600-01
Chr07	irgsp1_rep	CDS	24613200	24613306	.	-	2	Parent=Os07t0602600-01
Chr07	irgsp1_rep	CDS	24611905	24612336	.	-	0	Parent=Os07t0602600-01
Chr07	irgsp1_rep	three_prime_UTR	24611198	24611904	.	-	.	Parent=Os07t0602600-01
Chr07	irgsp1_rep	mRNA	24621064	24624727	.	+	.	ID=Os07t0602700-01;Name=Os07t0602700-01;Locus_id=Os07g0602700;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK100000 (DDBJ%2C Best hit);ORF_evidence=Q9S7I6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013134N21;Oryzabase=19677;Expression=AK100000;TENOR=Os07t0602700-01;KEGG=Os07t0602700-01
Chr07	irgsp1_rep	five_prime_UTR	24621064	24621257	.	+	.	Parent=Os07t0602700-01
Chr07	irgsp1_rep	CDS	24621258	24624512	.	+	0	Parent=Os07t0602700-01
Chr07	irgsp1_rep	three_prime_UTR	24624513	24624727	.	+	.	Parent=Os07t0602700-01
Chr07	irgsp1_rep	mRNA	24628239	24629698	.	-	.	ID=Os07t0602800-00;Name=Os07t0602800-00;Locus_id=Os07g0602800;Note=Similar to glycerophosphoryl diester phosphodiesterase.;Transcript_evidence=BT038644 (DDBJ);ORF_evidence=B6TLZ9 (UniProt);GO=Biological Process: glycerol metabolic process (GO:0006071),Biological Process: lipid metabolic process (GO:0006629),Molecular Function: phosphoric diester hydrolase activity (GO:0008081),Molecular Function: glycerophosphodiester phosphodiesterase activity (GO:0008889);InterPro=Glycerophosphoryl diester phosphodiesterase (IPR004129),PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain (IPR017946);TENOR=Os07t0602800-00;KEGG=Os07t0602800-00
Chr07	irgsp1_rep	five_prime_UTR	24629670	24629698	.	-	.	Parent=Os07t0602800-00
Chr07	irgsp1_rep	CDS	24629291	24629669	.	-	0	Parent=Os07t0602800-00
Chr07	irgsp1_rep	CDS	24628627	24629198	.	-	2	Parent=Os07t0602800-00
Chr07	irgsp1_rep	CDS	24628262	24628432	.	-	0	Parent=Os07t0602800-00
Chr07	irgsp1_rep	three_prime_UTR	24628239	24628261	.	-	.	Parent=Os07t0602800-00
Chr07	irgsp1_rep	mRNA	24633587	24636319	.	-	.	ID=Os07t0602900-01;Name=Os07t0602900-01;Locus_id=Os07g0602900;Note=Protein of unknown function DUF1675 domain containing protein.;Transcript_evidence=AK240661 (DDBJ%2C Best hit);ORF_evidence=B1B5D3 (UniProt);InterPro=Protein of unknown function DUF1675 (IPR012463);NIAS_FLcDNA=J023149E23;TENOR=Os07t0602900-01;KEGG=Os07t0602900-01
Chr07	irgsp1_rep	five_prime_UTR	24635855	24636319	.	-	.	Parent=Os07t0602900-01
Chr07	irgsp1_rep	CDS	24635329	24635854	.	-	0	Parent=Os07t0602900-01
Chr07	irgsp1_rep	CDS	24633874	24634307	.	-	2	Parent=Os07t0602900-01
Chr07	irgsp1_rep	three_prime_UTR	24633587	24633873	.	-	.	Parent=Os07t0602900-01
Chr07	irgsp1_rep	mRNA	24633644	24635655	.	-	.	ID=Os07t0602900-02;Name=Os07t0602900-02;Locus_id=Os07g0602900;Note=Similar to UPF0737 protein 1.;Transcript_evidence=AK288709 (DDBJ%2C Best hit);ORF_evidence=B1B5D3 (UniProt);InterPro=Protein of unknown function DUF1675 (IPR012463);NIAS_FLcDNA=J090061M20;TENOR=Os07t0602900-02;KEGG=Os07t0602900-02
Chr07	irgsp1_rep	five_prime_UTR	24635654	24635655	.	-	.	Parent=Os07t0602900-02
Chr07	irgsp1_rep	CDS	24635329	24635653	.	-	0	Parent=Os07t0602900-02
Chr07	irgsp1_rep	CDS	24633874	24634307	.	-	2	Parent=Os07t0602900-02
Chr07	irgsp1_rep	three_prime_UTR	24633644	24633873	.	-	.	Parent=Os07t0602900-02
Chr07	irgsp1_rep	mRNA	24654907	24659846	.	-	.	ID=Os07t0603100-01;Name=Os07t0603100-01;Locus_id=Os07g0603100;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK101352 (DDBJ%2C Best hit);ORF_evidence=A2YNG6 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: intracellular (GO:0005622),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nuclear transport factor 2 (IPR002075),Nucleotide-binding%2C alpha-beta plait (IPR012677),Nuclear transport factor 2%2C Eukaryote (IPR018222);NIAS_FLcDNA=J033034P09;Expression=AK101352;TENOR=Os07t0603100-01;KEGG=Os07t0603100-01
Chr07	irgsp1_rep	five_prime_UTR	24659713	24659846	.	-	.	Parent=Os07t0603100-01
Chr07	irgsp1_rep	five_prime_UTR	24658870	24658871	.	-	.	Parent=Os07t0603100-01
Chr07	irgsp1_rep	CDS	24658822	24658869	.	-	0	Parent=Os07t0603100-01
Chr07	irgsp1_rep	CDS	24658589	24658726	.	-	0	Parent=Os07t0603100-01
Chr07	irgsp1_rep	CDS	24657361	24657709	.	-	0	Parent=Os07t0603100-01
Chr07	irgsp1_rep	CDS	24657046	24657281	.	-	2	Parent=Os07t0603100-01
Chr07	irgsp1_rep	CDS	24656750	24656924	.	-	0	Parent=Os07t0603100-01
Chr07	irgsp1_rep	CDS	24656529	24656650	.	-	2	Parent=Os07t0603100-01
Chr07	irgsp1_rep	CDS	24656391	24656456	.	-	0	Parent=Os07t0603100-01
Chr07	irgsp1_rep	CDS	24656098	24656161	.	-	0	Parent=Os07t0603100-01
Chr07	irgsp1_rep	CDS	24655211	24655722	.	-	2	Parent=Os07t0603100-01
Chr07	irgsp1_rep	three_prime_UTR	24654907	24655210	.	-	.	Parent=Os07t0603100-01
Chr07	irgsp1_rep	mRNA	24655561	24657107	.	+	.	ID=Os07t0603150-00;Name=Os07t0603150-00;Locus_id=Os07g0603150;Note=Non-protein coding transcript.;Transcript_evidence=BT018236 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0603150-00
Chr07	irgsp1_rep	exon	24655561	24655706	.	+	.	Parent=Os07t0603150-00
Chr07	irgsp1_rep	exon	24656305	24656461	.	+	.	Parent=Os07t0603150-00
Chr07	irgsp1_rep	exon	24656538	24656669	.	+	.	Parent=Os07t0603150-00
Chr07	irgsp1_rep	exon	24656757	24656913	.	+	.	Parent=Os07t0603150-00
Chr07	irgsp1_rep	exon	24657037	24657107	.	+	.	Parent=Os07t0603150-00
Chr07	irgsp1_rep	mRNA	24660139	24662543	.	+	.	ID=Os07t0603200-01;Name=Os07t0603200-01;Locus_id=Os07g0603200;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK112078 (DDBJ%2C Best hit);ORF_evidence=B6U076 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=001-124-C09;Expression=AK112078;TENOR=Os07t0603200-01;KEGG=Os07t0603200-01
Chr07	irgsp1_rep	five_prime_UTR	24660139	24660223	.	+	.	Parent=Os07t0603200-01
Chr07	irgsp1_rep	five_prime_UTR	24660640	24660658	.	+	.	Parent=Os07t0603200-01
Chr07	irgsp1_rep	CDS	24660659	24662332	.	+	0	Parent=Os07t0603200-01
Chr07	irgsp1_rep	three_prime_UTR	24662333	24662543	.	+	.	Parent=Os07t0603200-01
Chr07	irgsp1_rep	mRNA	24664328	24669321	.	-	.	ID=Os07t0603300-01;Name=Os07t0603300-01;Locus_id=Os07g0603300;RAP-DB Gene Symbol Synonym(s)=GL7%2C GW7%2C qGW7%2C qGL7;RAP-DB Gene Name Synonym(s)=Grain Length on Chromosome 7%2C grain width QTL on Chromosome 7;Oryzabase Gene Symbol Synonym(s)=GL7%2C GW7%2C qGW7%2C qGL7%2C SLG7%2C GL7/GW7/SLG7%2C qPY7;Oryzabase Gene Name Synonym(s)=Grain Length on Chromosome 7%2C grain width QTL on Chromosome 7%2C Slender grain on Chromosome 7;Note=TON1 RECRUIT MOTIF (TRM)-containing protein%2C Regulation of grain size and shape;Transcript_evidence=KP899557,AK066770;ORF_evidence=Q6YW00;InterPro=Domain of unknown function DUF4378 (IPR025486);NIAS_FLcDNA=J013088M15;Manual Curation=October 21%2C 2015;Literature_PMID=26147619,26147620;Oryzabase=19915;TENOR=Os07t0603300-01
Chr07	irgsp1_rep	five_prime_UTR	24669131	24669321	.	-	.	Parent=Os07t0603300-01
Chr07	irgsp1_rep	CDS	24668950	24669130	.	-	0	Parent=Os07t0603300-01
Chr07	irgsp1_rep	CDS	24667833	24667900	.	-	2	Parent=Os07t0603300-01
Chr07	irgsp1_rep	CDS	24666021	24667700	.	-	0	Parent=Os07t0603300-01
Chr07	irgsp1_rep	CDS	24665803	24665920	.	-	0	Parent=Os07t0603300-01
Chr07	irgsp1_rep	CDS	24664442	24665217	.	-	2	Parent=Os07t0603300-01
Chr07	irgsp1_rep	three_prime_UTR	24664328	24664441	.	-	.	Parent=Os07t0603300-01
Chr07	irgsp1_rep	mRNA	24686195	24687733	.	-	.	ID=Os07t0603500-00;Name=Os07t0603500-00;Locus_id=Os07g0603500;Note=Peptidase A1 domain containing protein.;Transcript_evidence=AK374841 (DDBJ);ORF_evidence=A2YNG9 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);TENOR=Os07t0603500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	24687330	24687733	.	-	.	Parent=Os07t0603500-00
Chr07	irgsp1_rep	five_prime_UTR	24687125	24687127	.	-	.	Parent=Os07t0603500-00
Chr07	irgsp1_rep	CDS	24686195	24687124	.	-	0	Parent=Os07t0603500-00
Chr07	irgsp1_rep	mRNA	24699857	24703643	.	+	.	ID=Os07t0603600-01;Name=Os07t0603600-01;Locus_id=Os07g0603600;Note=Similar to esterase PIR7B.;Transcript_evidence=AK071549 (DDBJ%2C Best hit);ORF_evidence=NP_001147094.1 (RefSeq);NIAS_FLcDNA=J023105C06;TENOR=Os07t0603600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	24699857	24699857	.	+	.	Parent=Os07t0603600-01
Chr07	irgsp1_rep	CDS	24699858	24699896	.	+	0	Parent=Os07t0603600-01
Chr07	irgsp1_rep	CDS	24701570	24701806	.	+	0	Parent=Os07t0603600-01
Chr07	irgsp1_rep	CDS	24702607	24702750	.	+	0	Parent=Os07t0603600-01
Chr07	irgsp1_rep	CDS	24702876	24703007	.	+	0	Parent=Os07t0603600-01
Chr07	irgsp1_rep	CDS	24703104	24703391	.	+	0	Parent=Os07t0603600-01
Chr07	irgsp1_rep	three_prime_UTR	24703392	24703643	.	+	.	Parent=Os07t0603600-01
Chr07	irgsp1_rep	mRNA	24713778	24715813	.	+	.	ID=Os07t0603700-01;Name=Os07t0603700-01;Locus_id=Os07g0603700;RAP-DB Gene Symbol Synonym(s)=GE1%2C ge1%2C ge%2C CYP78A13%2C OsCYP78A13%2C GE%2C BG2;RAP-DB Gene Name Synonym(s)=GIANT EMBRYO 1%2C GIANT EMBRYO%2C giant embryo1%2C giant embryo 1%2C giant embryo%2C CytoChrome P450 78A13%2C big grain2;CGSNL Gene Symbol=GE1;CGSNL Gene Name=GIANT EMBRYO 1;Oryzabase Gene Symbol Synonym(s)=ge1%2C ge%2C CYP78A13%2C OsCYP78A13%2C GE%2C BG2%2C GES;Oryzabase Gene Name Synonym(s)=giant embryo1%2C giant embryo 1%2C giant embryo%2C big grain2%2C CytoChrome P450 78A13%2C GIANT EMBRYO%2C super-giant embryo;Note=CYP78A13 (CytoChrome P450)%2C Size control between embryo and endosperm;Transcript_evidence=AB780362 (Taichung 65);ORF_evidence=Q6YVW3;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);Manual Curation=February 27%2C 2014;Literature_PMID=23621326;Oryzabase=818;TENOR=Os07t0603700-01
Chr07	irgsp1_rep	five_prime_UTR	24713778	24713826	.	+	.	Parent=Os07t0603700-01
Chr07	irgsp1_rep	CDS	24713827	24714798	.	+	0	Parent=Os07t0603700-01
Chr07	irgsp1_rep	CDS	24714890	24715495	.	+	0	Parent=Os07t0603700-01
Chr07	irgsp1_rep	three_prime_UTR	24715496	24715813	.	+	.	Parent=Os07t0603700-01
Chr07	irgsp1_rep	mRNA	24714078	24715420	.	-	.	ID=Os07t0603750-00;Name=Os07t0603750-00;Locus_id=Os07g0603750;Note=Hypothetical protein.;Transcript_evidence=tplb0033d13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0603750-00
Chr07	irgsp1_rep	five_prime_UTR	24715419	24715420	.	-	.	Parent=Os07t0603750-00
Chr07	irgsp1_rep	CDS	24714910	24715418	.	-	0	Parent=Os07t0603750-00
Chr07	irgsp1_rep	CDS	24714659	24714818	.	-	1	Parent=Os07t0603750-00
Chr07	irgsp1_rep	three_prime_UTR	24714078	24714658	.	-	.	Parent=Os07t0603750-00
Chr07	irgsp1_rep	mRNA	24720195	24723752	.	+	.	ID=Os07t0603800-01;Name=Os07t0603800-01;Locus_id=Os07g0603800;RAP-DB Gene Symbol Synonym(s)=OsNPF7.1b%2C OsNPF7.1;CGSNL Gene Symbol=PTR4;CGSNL Gene Name=PROTEIN TRANSPORTER 4;Oryzabase Gene Symbol Synonym(s)=OsPTR4%2C OsNPF7.1%2C NPF7.1;Oryzabase Gene Name Synonym(s)=NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 7.1;Note=Nitrate transporter%2C Regulation of tiller number and grain yield;Transcript_evidence=AK101099;ORF_evidence=Q6YVW2;GO=Biological Process: transmembrane transport (GO:0055085),Molecular Function: transmembrane transporter activity (GO:0022857),Cellular Component: membrane (GO:0016020);InterPro=MFS transporter superfamily (IPR036259),Proton-dependent oligopeptide transporter family (IPR000109);NIAS_FLcDNA=J033025A03;Manual Curation=August 7%2C 2019;Literature_PMID=31128693;Oryzabase=8912;Expression=AK101099;TENOR=Os07t0603800-01;KEGG=Os07t0603800-01
Chr07	irgsp1_rep	five_prime_UTR	24720195	24720473	.	+	.	Parent=Os07t0603800-01
Chr07	irgsp1_rep	five_prime_UTR	24720571	24720623	.	+	.	Parent=Os07t0603800-01
Chr07	irgsp1_rep	CDS	24720624	24720671	.	+	0	Parent=Os07t0603800-01
Chr07	irgsp1_rep	CDS	24721170	24721275	.	+	0	Parent=Os07t0603800-01
Chr07	irgsp1_rep	CDS	24721448	24721665	.	+	2	Parent=Os07t0603800-01
Chr07	irgsp1_rep	CDS	24721796	24722346	.	+	0	Parent=Os07t0603800-01
Chr07	irgsp1_rep	CDS	24722711	24723521	.	+	1	Parent=Os07t0603800-01
Chr07	irgsp1_rep	three_prime_UTR	24723522	24723752	.	+	.	Parent=Os07t0603800-01
Chr07	irgsp1_rep	mRNA	24722290	24723886	.	+	.	ID=Os07t0603800-02;Name=Os07t0603800-02;Locus_id=Os07g0603800;CGSNL Gene Symbol=PTR4;CGSNL Gene Name=PROTEIN TRANSPORTER 4;Oryzabase Gene Symbol Synonym(s)=OsPTR4%2C OsNPF7.1%2C NPF7.1;Oryzabase Gene Name Synonym(s)=NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 7.1;Note=Similar to peptide transporter PTR2.;Transcript_evidence=AK061822 (DDBJ%2C Best hit);ORF_evidence=B6TII9 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109);NIAS_FLcDNA=001-040-B12;Oryzabase=8912;Expression=AK061822;TENOR=Os07t0603800-02;KEGG=Os07t0603800-02
Chr07	irgsp1_rep	five_prime_UTR	24722290	24722290	.	+	.	Parent=Os07t0603800-02
Chr07	irgsp1_rep	CDS	24722291	24722346	.	+	0	Parent=Os07t0603800-02
Chr07	irgsp1_rep	CDS	24722711	24723521	.	+	1	Parent=Os07t0603800-02
Chr07	irgsp1_rep	three_prime_UTR	24723522	24723886	.	+	.	Parent=Os07t0603800-02
Chr07	irgsp1_rep	mRNA	24720067	24723873	.	+	.	ID=Os07t0603800-03;Name=Os07t0603800-03;Locus_id=Os07g0603800;RAP-DB Gene Symbol Synonym(s)=OsNPF7.1a%2C OsNPF7.1;CGSNL Gene Symbol=PTR4;CGSNL Gene Name=PROTEIN TRANSPORTER 4;Oryzabase Gene Symbol Synonym(s)=OsPTR4%2C OsNPF7.1%2C NPF7.1;Oryzabase Gene Name Synonym(s)=NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 7.1;Note=Nitrate transporter%2C Regulation of tiller number and grain yield;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Biological Process: transmembrane transport (GO:0055085),Molecular Function: transmembrane transporter activity (GO:0022857),Cellular Component: membrane (GO:0016020);InterPro=MFS transporter superfamily (IPR036259),Proton-dependent oligopeptide transporter family (IPR000109);Manual Curation=August 7%2C 2019;Literature_PMID=31128693;Oryzabase=8912
Chr07	irgsp1_rep	five_prime_UTR	24720067	24720320	.	+	.	Parent=Os07t0603800-03
Chr07	irgsp1_rep	CDS	24720321	24720671	.	+	0	Parent=Os07t0603800-03
Chr07	irgsp1_rep	CDS	24721170	24721275	.	+	0	Parent=Os07t0603800-03
Chr07	irgsp1_rep	CDS	24721448	24721665	.	+	2	Parent=Os07t0603800-03
Chr07	irgsp1_rep	CDS	24721796	24722346	.	+	0	Parent=Os07t0603800-03
Chr07	irgsp1_rep	CDS	24722711	24723521	.	+	1	Parent=Os07t0603800-03
Chr07	irgsp1_rep	three_prime_UTR	24723522	24723873	.	+	.	Parent=Os07t0603800-03
Chr07	irgsp1_rep	mRNA	24724562	24728092	.	+	.	ID=Os07t0603900-01;Name=Os07t0603900-01;Locus_id=Os07g0603900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK063924 (DDBJ%2C Best hit);ORF_evidence=NP_200904.1 (RefSeq);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=001-123-C02;Expression=AK063924;TENOR=Os07t0603900-01;KEGG=Os07t0603900-01
Chr07	irgsp1_rep	five_prime_UTR	24724562	24724601	.	+	.	Parent=Os07t0603900-01
Chr07	irgsp1_rep	CDS	24724602	24726062	.	+	0	Parent=Os07t0603900-01
Chr07	irgsp1_rep	three_prime_UTR	24726063	24726074	.	+	.	Parent=Os07t0603900-01
Chr07	irgsp1_rep	three_prime_UTR	24727710	24728092	.	+	.	Parent=Os07t0603900-01
Chr07	irgsp1_rep	mRNA	24736930	24742044	.	+	.	ID=Os07t0604000-01;Name=Os07t0604000-01;Locus_id=Os07g0604000;Note=Similar to 6-phosphogluconolactonase-like protein.;Transcript_evidence=AK070405 (DDBJ%2C Best hit);ORF_evidence=B6U0H2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: pentose-phosphate shunt (GO:0006098),Molecular Function: 6-phosphogluconolactonase activity (GO:0017057);InterPro=6-phosphogluconolactonase%2C DevB-type (IPR005900),Glucosamine/galactosamine-6-phosphate isomerase (IPR006148);NIAS_FLcDNA=J023052F08;Expression=AK070405;TENOR=Os07t0604000-01;KEGG=Os07t0604000-01 (EC:3.1.1.31)
Chr07	irgsp1_rep	five_prime_UTR	24736930	24737077	.	+	.	Parent=Os07t0604000-01
Chr07	irgsp1_rep	five_prime_UTR	24739152	24739202	.	+	.	Parent=Os07t0604000-01
Chr07	irgsp1_rep	CDS	24739203	24739387	.	+	0	Parent=Os07t0604000-01
Chr07	irgsp1_rep	CDS	24739494	24739629	.	+	1	Parent=Os07t0604000-01
Chr07	irgsp1_rep	CDS	24741217	24741738	.	+	0	Parent=Os07t0604000-01
Chr07	irgsp1_rep	three_prime_UTR	24741739	24742044	.	+	.	Parent=Os07t0604000-01
Chr07	irgsp1_rep	mRNA	24739512	24742048	.	+	.	ID=Os07t0604000-02;Name=Os07t0604000-02;Locus_id=Os07g0604000;Note=Similar to 6-phosphogluconolactonase-like protein.;Transcript_evidence=AK059691 (DDBJ%2C Best hit);ORF_evidence=B7EHT5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: pentose-phosphate shunt (GO:0006098),Molecular Function: 6-phosphogluconolactonase activity (GO:0017057);InterPro=6-phosphogluconolactonase%2C DevB-type (IPR005900),Glucosamine/galactosamine-6-phosphate isomerase (IPR006148);NIAS_FLcDNA=001-032-B03;Expression=AK059691;TENOR=Os07t0604000-02;KEGG=Os07t0604000-02 (EC:3.1.1.31)
Chr07	irgsp1_rep	five_prime_UTR	24739512	24739512	.	+	.	Parent=Os07t0604000-02
Chr07	irgsp1_rep	CDS	24739513	24739629	.	+	0	Parent=Os07t0604000-02
Chr07	irgsp1_rep	CDS	24741217	24741738	.	+	0	Parent=Os07t0604000-02
Chr07	irgsp1_rep	three_prime_UTR	24741739	24742048	.	+	.	Parent=Os07t0604000-02
Chr07	irgsp1_rep	mRNA	24744516	24744957	.	+	.	ID=Os07t0604100-00;Name=Os07t0604100-00;Locus_id=Os07g0604100;Oryzabase Gene Symbol Synonym(s)=OsEnS-108%2C EnS-108%2C DEFL;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 108%2C DEFL family gene;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001175289.1 (RefSeq);Oryzabase=18409;TENOR=Os07t0604100-00;KEGG=Os07t0604100-00
Chr07	irgsp1_rep	CDS	24744516	24744609	.	+	0	Parent=Os07t0604100-00
Chr07	irgsp1_rep	CDS	24744764	24744957	.	+	2	Parent=Os07t0604100-00
Chr07	irgsp1_rep	mRNA	24751787	24755315	.	+	.	ID=Os07t0604300-01;Name=Os07t0604300-01;Locus_id=Os07g0604300;RAP-DB Gene Symbol Synonym(s)=OsBC1L6;RAP-DB Gene Name Synonym(s)=Brittle Culm 1-like 6;CGSNL Gene Symbol=BC1L6;CGSNL Gene Name=BRITTLE CULM-LIKE 6;Oryzabase Gene Symbol Synonym(s)=OsBC1L6%2C OsPCS8%2C PCS8;Oryzabase Gene Name Synonym(s)=BRITTLE CULM1-like 6%2C Brittle Culm 1-like 6%2C Phytochelatin synthase 8;Note=A member of the COBRA-like protein family%2C Modulation of &beta%3B-glucan synthesis during endosperm cell wall formation;Transcript_evidence=AK121884,AK101860;ORF_evidence=Q6Z4G8;GO=Biological Process: cellulose microfibril organization (GO:0010215),Biological Process: cell growth (GO:0016049),Cellular Component: anchored component of membrane (GO:0031225);InterPro=COBRA%2C plant (IPR006918);NIAS_FLcDNA=J033104P13,J033070A18;Manual Curation=May 27%2C 2019;Literature_PMID=31120929;Oryzabase=22987;TENOR=Os07t0604300-01;Subcellular location=plasma membrane (GO:0005886)
Chr07	irgsp1_rep	five_prime_UTR	24751787	24751934	.	+	.	Parent=Os07t0604300-01
Chr07	irgsp1_rep	CDS	24751935	24752013	.	+	0	Parent=Os07t0604300-01
Chr07	irgsp1_rep	CDS	24752892	24752971	.	+	2	Parent=Os07t0604300-01
Chr07	irgsp1_rep	CDS	24753607	24754063	.	+	0	Parent=Os07t0604300-01
Chr07	irgsp1_rep	CDS	24754221	24754374	.	+	2	Parent=Os07t0604300-01
Chr07	irgsp1_rep	CDS	24754458	24754735	.	+	1	Parent=Os07t0604300-01
Chr07	irgsp1_rep	CDS	24754805	24755097	.	+	2	Parent=Os07t0604300-01
Chr07	irgsp1_rep	three_prime_UTR	24755098	24755315	.	+	.	Parent=Os07t0604300-01
Chr07	irgsp1_rep	mRNA	24752889	24755200	.	-	.	ID=Os07t0604350-00;Name=Os07t0604350-00;Locus_id=Os07g0604350;Note=Non-protein coding transcript.;Transcript_evidence=tplb0046p06 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os07t0604350-00
Chr07	irgsp1_rep	exon	24754812	24755200	.	-	.	Parent=Os07t0604350-00
Chr07	irgsp1_rep	exon	24754455	24754742	.	-	.	Parent=Os07t0604350-00
Chr07	irgsp1_rep	exon	24754221	24754371	.	-	.	Parent=Os07t0604350-00
Chr07	irgsp1_rep	exon	24753620	24754063	.	-	.	Parent=Os07t0604350-00
Chr07	irgsp1_rep	exon	24752889	24752981	.	-	.	Parent=Os07t0604350-00
Chr07	irgsp1_rep	mRNA	24755706	24758207	.	-	.	ID=Os07t0604400-00;Name=Os07t0604400-00;Locus_id=Os07g0604400;CGSNL Gene Symbol=BC1L7;CGSNL Gene Name=BRITTLE CULM-LIKE 7;Oryzabase Gene Symbol Synonym(s)=OsBC1L7%2C OsPCS6%2C PCS6;Oryzabase Gene Name Synonym(s)=BRITTLE CULM1-like 7%2C Phytochelatin synthase 6;Note=Similar to COBRA-like protein 6.;Transcript_evidence=EF078702 (DDBJ);ORF_evidence=Q6Z4G7 (UniProt);InterPro=Glycosyl-phosphatidyl inositol-anchored%2C plant (IPR006918),COBRA-like (IPR017391);Oryzabase=22988;TENOR=Os07t0604400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	24758153	24758207	.	-	.	Parent=Os07t0604400-00
Chr07	irgsp1_rep	CDS	24758095	24758152	.	-	0	Parent=Os07t0604400-00
Chr07	irgsp1_rep	CDS	24757922	24758001	.	-	2	Parent=Os07t0604400-00
Chr07	irgsp1_rep	CDS	24757034	24757490	.	-	0	Parent=Os07t0604400-00
Chr07	irgsp1_rep	CDS	24756820	24756967	.	-	2	Parent=Os07t0604400-00
Chr07	irgsp1_rep	CDS	24756415	24756740	.	-	1	Parent=Os07t0604400-00
Chr07	irgsp1_rep	CDS	24755715	24756001	.	-	2	Parent=Os07t0604400-00
Chr07	irgsp1_rep	three_prime_UTR	24755706	24755714	.	-	.	Parent=Os07t0604400-00
Chr07	irgsp1_rep	mRNA	24755767	24757474	.	+	.	ID=Os07t0604433-00;Name=Os07t0604433-00;Locus_id=Os07g0604433;Note=Hypothetical protein.;Transcript_evidence=tplb0046p06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0604433-00
Chr07	irgsp1_rep	five_prime_UTR	24755767	24755768	.	+	.	Parent=Os07t0604433-00
Chr07	irgsp1_rep	CDS	24755769	24756001	.	+	0	Parent=Os07t0604433-00
Chr07	irgsp1_rep	CDS	24756415	24756661	.	+	1	Parent=Os07t0604433-00
Chr07	irgsp1_rep	CDS	24756773	24756956	.	+	0	Parent=Os07t0604433-00
Chr07	irgsp1_rep	CDS	24757025	24757113	.	+	2	Parent=Os07t0604433-00
Chr07	irgsp1_rep	three_prime_UTR	24757114	24757474	.	+	.	Parent=Os07t0604433-00
Chr07	irgsp1_rep	mRNA	24757921	24757999	.	+	.	ID=Os07t0604466-00;Name=Os07t0604466-00;Locus_id=Os07g0604466;Note=Non-protein coding transcript.;Transcript_evidence=BT084555 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0604466-00
Chr07	irgsp1_rep	exon	24757921	24757999	.	+	.	Parent=Os07t0604466-00
Chr07	irgsp1_rep	mRNA	24759625	24763548	.	-	.	ID=Os07t0604500-01;Name=Os07t0604500-01;Locus_id=Os07g0604500;Note=Similar to Mitochondrial import inner membrane translocase subunit Tim17.;Transcript_evidence=AK069085 (DDBJ%2C Best hit),AK064312 (DDBJ%2C Best hit);ORF_evidence=NP_001150396.1 (RefSeq);InterPro=Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 (IPR003397);NIAS_FLcDNA=J023009D04,002-107-C05;Expression=AK069085;TENOR=Os07t0604500-01;KEGG=Os07t0604500-01
Chr07	irgsp1_rep	five_prime_UTR	24763447	24763548	.	-	.	Parent=Os07t0604500-01
Chr07	irgsp1_rep	CDS	24762775	24763446	.	-	0	Parent=Os07t0604500-01
Chr07	irgsp1_rep	three_prime_UTR	24762767	24762774	.	-	.	Parent=Os07t0604500-01
Chr07	irgsp1_rep	three_prime_UTR	24759625	24760023	.	-	.	Parent=Os07t0604500-01
Chr07	irgsp1_rep	mRNA	24759669	24760842	.	-	.	ID=Os07t0604500-03;Name=Os07t0604500-03;Locus_id=Os07g0604500;Note=Hypothetical conserved gene.;Transcript_evidence=AK101034 (DDBJ%2C Best hit);ORF_evidence=B9FYB0 (UniProt);NIAS_FLcDNA=J023150O19;Expression=AK101034;TENOR=Os07t0604500-03;KEGG=Os07t0604500-03
Chr07	irgsp1_rep	five_prime_UTR	24760131	24760842	.	-	.	Parent=Os07t0604500-03
Chr07	irgsp1_rep	CDS	24759888	24760130	.	-	0	Parent=Os07t0604500-03
Chr07	irgsp1_rep	three_prime_UTR	24759669	24759887	.	-	.	Parent=Os07t0604500-03
Chr07	irgsp1_rep	mRNA	24761861	24762385	.	-	.	ID=Os07t0604550-00;Name=Os07t0604550-00;Locus_id=Os07g0604550;Note=Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FYB1 (UniProt);InterPro=Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 (IPR003397);TENOR=Os07t0604550-00
Chr07	irgsp1_rep	CDS	24761861	24762385	.	-	0	Parent=Os07t0604550-00
Chr07	irgsp1_rep	mRNA	24765682	24766713	.	+	.	ID=Os07t0604600-01;Name=Os07t0604600-01;Locus_id=Os07g0604600;Oryzabase Gene Name Synonym(s)=B12D-like protein;Note=Similar to B12D protein.;Transcript_evidence=AK062832 (DDBJ%2C Best hit);ORF_evidence=B6T0R2 (UniProt);InterPro=NADH-ubiquinone reductase complex 1 MLRQ subunit (IPR010530);NIAS_FLcDNA=001-107-G08;Oryzabase=18123;TENOR=Os07t0604600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	24765682	24765778	.	+	.	Parent=Os07t0604600-01
Chr07	irgsp1_rep	CDS	24765779	24765802	.	+	0	Parent=Os07t0604600-01
Chr07	irgsp1_rep	CDS	24765975	24766063	.	+	0	Parent=Os07t0604600-01
Chr07	irgsp1_rep	CDS	24766339	24766513	.	+	1	Parent=Os07t0604600-01
Chr07	irgsp1_rep	three_prime_UTR	24766514	24766713	.	+	.	Parent=Os07t0604600-01
Chr07	irgsp1_rep	mRNA	24768075	24769065	.	+	.	ID=Os07t0604700-01;Name=Os07t0604700-01;Locus_id=Os07g0604700;RAP-DB Gene Symbol Synonym(s)=OsB12D1;RAP-DB Gene Name Synonym(s)=B12D-like protein 1;Oryzabase Gene Symbol Synonym(s)=OsB12D1;Oryzabase Gene Name Synonym(s)=B12D-like protein 1;Note=B12D-like protein%2C Flooding tolerance during seed germination and early seedling growth;Transcript_evidence=AK241857;ORF_evidence=Q6Z4G4;InterPro=NADH-ubiquinone reductase complex 1 MLRQ subunit (IPR010530);NIAS_FLcDNA=J065216A09;Manual Curation=July 9%2C 2015;Literature_PMID=25089878;Oryzabase=18118;TENOR=Os07t0604700-01;KEGG=Os07t0604700-01
Chr07	irgsp1_rep	five_prime_UTR	24768075	24768205	.	+	.	Parent=Os07t0604700-01
Chr07	irgsp1_rep	CDS	24768206	24768229	.	+	0	Parent=Os07t0604700-01
Chr07	irgsp1_rep	CDS	24768614	24768877	.	+	0	Parent=Os07t0604700-01
Chr07	irgsp1_rep	three_prime_UTR	24768878	24769065	.	+	.	Parent=Os07t0604700-01
Chr07	irgsp1_rep	mRNA	24773276	24776519	.	+	.	ID=Os07t0604800-01;Name=Os07t0604800-01;Locus_id=Os07g0604800;RAP-DB Gene Symbol Synonym(s)=UAM3%2C OsUAM3;RAP-DB Gene Name Synonym(s)=UDP-ARABINOPYRANOSE MUTASE 3%2C UDP-Arabinopyranose Mutase 3;CGSNL Gene Symbol=UAM3;CGSNL Gene Name=UDP-ARABINOPYRANOSE MUTASE 3;Oryzabase Gene Symbol Synonym(s)=OsUAM3;Oryzabase Gene Name Synonym(s)=UDP-Arabinopyranose Mutase 3;Note=UDP-arabinopyranose mutase%2C Pollen wall morphogenesis;Transcript_evidence=AK061294;ORF_evidence=Q6Z4G3;GO=Biological Process: cellulose biosynthetic process (GO:0030244),Molecular Function: intramolecular transferase activity (GO:0016866);InterPro=Reversibly glycosylated polypeptide family (IPR004901),Nucleotide-diphospho-sugar transferases (IPR029044);NIAS_FLcDNA=006-301-D01;Manual Curation=February 27%2C 2015;Literature_PMID=25261533,17182701;Oryzabase=8828;Expression=AK061294;TENOR=Os07t0604800-01;KEGG=Os07t0604800-01 (EC:2.4.1.112)
Chr07	irgsp1_rep	five_prime_UTR	24773276	24773325	.	+	.	Parent=Os07t0604800-01
Chr07	irgsp1_rep	CDS	24773326	24773661	.	+	0	Parent=Os07t0604800-01
Chr07	irgsp1_rep	CDS	24775306	24775556	.	+	0	Parent=Os07t0604800-01
Chr07	irgsp1_rep	CDS	24775645	24775813	.	+	1	Parent=Os07t0604800-01
Chr07	irgsp1_rep	CDS	24775919	24776263	.	+	0	Parent=Os07t0604800-01
Chr07	irgsp1_rep	three_prime_UTR	24776264	24776519	.	+	.	Parent=Os07t0604800-01
Chr07	irgsp1_rep	mRNA	24777005	24777072	.	-	.	ID=Os07t0604900-00;Name=Os07t0604900-00;Locus_id=Os07g0604900;Note=Non-protein coding transcript.;Transcript_evidence=X06283 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0604900-00
Chr07	irgsp1_rep	exon	24777005	24777072	.	-	.	Parent=Os07t0604900-00
Chr07	irgsp1_rep	mRNA	24788476	24793679	.	+	.	ID=Os07t0605200-01;Name=Os07t0605200-01;Locus_id=Os07g0605200;RAP-DB Gene Symbol Synonym(s)=MADS18%2C OsMADS18%2C MADS2%2C OsMADS2%2C MADS28%2C OsMADS28%2C FDRMADS7%2C OsMADS18/28;RAP-DB Gene Name Synonym(s)=MADS BOX GENE 18%2C MADS box gene18%2C MADS-box transcription factor 18%2C MADS-box protein 2%2C MADS-box protein 28;CGSNL Gene Symbol=MADS18;CGSNL Gene Name=MADS BOX GENE 18;Oryzabase Gene Symbol Synonym(s)=OsMADS18%2C MADS2%2C OsMADS2%2C MADS28%2C OsMADS28%2C FDRMADS7%2C OsMADS18/28;Oryzabase Gene Name Synonym(s)=MADS box gene18%2C MADS-box transcription factor 18%2C MADS-box protein 2%2C MADS-box protein 28;Note=APETALA1 (AP1)/ FRUITFULL (FUL)-like MADS box transcription factor%2C Specification of inflorescence meristem identity;Transcript_evidence=AK064704;ORF_evidence=Q0D4T4;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein dimerization activity (GO:0046983),Cellular Component: nucleus (GO:0005634);InterPro=Transcription factor%2C MADS-box (IPR002100),Transcription factor%2C K-box (IPR002487);NIAS_FLcDNA=002-118-A02;Manual Curation=September 9%2C 2014;Literature_PMID=22570445,10444103;Oryzabase=3086;TENOR=Os07t0605200-01;KEGG=Os07t0605200-01
Chr07	irgsp1_rep	five_prime_UTR	24788476	24788564	.	+	.	Parent=Os07t0605200-01
Chr07	irgsp1_rep	CDS	24788565	24788749	.	+	0	Parent=Os07t0605200-01
Chr07	irgsp1_rep	CDS	24791477	24791555	.	+	1	Parent=Os07t0605200-01
Chr07	irgsp1_rep	CDS	24791650	24791714	.	+	0	Parent=Os07t0605200-01
Chr07	irgsp1_rep	CDS	24791794	24791893	.	+	1	Parent=Os07t0605200-01
Chr07	irgsp1_rep	CDS	24792009	24792050	.	+	0	Parent=Os07t0605200-01
Chr07	irgsp1_rep	CDS	24792642	24792680	.	+	0	Parent=Os07t0605200-01
Chr07	irgsp1_rep	CDS	24792777	24792910	.	+	0	Parent=Os07t0605200-01
Chr07	irgsp1_rep	CDS	24793325	24793430	.	+	1	Parent=Os07t0605200-01
Chr07	irgsp1_rep	three_prime_UTR	24793431	24793679	.	+	.	Parent=Os07t0605200-01
Chr07	irgsp1_rep	mRNA	24800417	24800765	.	+	.	ID=Os07t0605275-00;Name=Os07t0605275-00;Locus_id=Os07g0605275;Note=Hypothetical protein.;Transcript_evidence=AK357174 (DDBJ);ORF_evidence=GeneMark;TENOR=Os07t0605275-00
Chr07	irgsp1_rep	CDS	24800417	24800765	.	+	0	Parent=Os07t0605275-00
Chr07	irgsp1_rep	mRNA	24805571	24805912	.	+	.	ID=Os07t0605350-00;Name=Os07t0605350-00;Locus_id=Os07g0605350;Note=Similar to Protein EGG APPARATUS-1.;Transcript_evidence=EU976380 (DDBJ);ORF_evidence=Q5G8Z3 (UniProt);TENOR=Os07t0605350-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	24805571	24805912	.	+	0	Parent=Os07t0605350-00
Chr07	irgsp1_rep	mRNA	24809650	24810354	.	+	.	ID=Os07t0605400-01;Name=Os07t0605400-01;Locus_id=Os07g0605400;Note=Similar to EGG APPARATUS-1 protein (ZmEA1).;Transcript_evidence=AK068670 (DDBJ%2C Best hit);ORF_evidence=NP_001152610.1 (RefSeq);NIAS_FLcDNA=J013161J19;Expression=AK068670;TENOR=Os07t0605400-01;KEGG=Os07t0605400-01
Chr07	irgsp1_rep	five_prime_UTR	24809650	24809735	.	+	.	Parent=Os07t0605400-01
Chr07	irgsp1_rep	CDS	24809736	24810077	.	+	0	Parent=Os07t0605400-01
Chr07	irgsp1_rep	three_prime_UTR	24810078	24810354	.	+	.	Parent=Os07t0605400-01
Chr07	irgsp1_rep	mRNA	24809677	24810354	.	+	.	ID=Os07t0605400-02;Name=Os07t0605400-02;Locus_id=Os07g0605400;Note=Similar to EGG APPARATUS-1 protein (ZmEA1).;Transcript_evidence=AK103128 (DDBJ%2C Best hit);ORF_evidence=NP_001152610.1 (RefSeq);NIAS_FLcDNA=J033119N22;Expression=AK103128;TENOR=Os07t0605400-02;KEGG=Os07t0605400-02
Chr07	irgsp1_rep	five_prime_UTR	24809677	24809735	.	+	.	Parent=Os07t0605400-02
Chr07	irgsp1_rep	CDS	24809736	24810077	.	+	0	Parent=Os07t0605400-02
Chr07	irgsp1_rep	three_prime_UTR	24810078	24810354	.	+	.	Parent=Os07t0605400-02
Chr07	irgsp1_rep	mRNA	24814196	24815709	.	-	.	ID=Os07t0605600-00;Name=Os07t0605600-00;Locus_id=Os07g0605600;Note=Hypothetical conserved gene.;Transcript_evidence=AK109594 (DDBJ%2C Secondary hit);ORF_evidence=Q6Z4F4 (UniProt);Expression=AK109594;TENOR=Os07t0605600-00;KEGG=Os07t0605600-00
Chr07	irgsp1_rep	five_prime_UTR	24815606	24815709	.	-	.	Parent=Os07t0605600-00
Chr07	irgsp1_rep	CDS	24815519	24815605	.	-	0	Parent=Os07t0605600-00
Chr07	irgsp1_rep	CDS	24814483	24815502	.	-	0	Parent=Os07t0605600-00
Chr07	irgsp1_rep	three_prime_UTR	24814196	24814482	.	-	.	Parent=Os07t0605600-00
Chr07	irgsp1_rep	mRNA	24845115	24846476	.	+	.	ID=Os07t0605800-01;Name=Os07t0605800-01;Locus_id=Os07g0605800;Note=Similar to STF-1 (Fragment).;Transcript_evidence=AK105239 (DDBJ%2C Best hit);ORF_evidence=B6STJ6 (UniProt);GO=Molecular Function: sulfotransferase activity (GO:0008146);InterPro=Sulfotransferase domain (IPR000863);NIAS_FLcDNA=001-113-B04;Expression=AK105239;TENOR=Os07t0605800-01;KEGG=Os07t0605800-01
Chr07	irgsp1_rep	five_prime_UTR	24845115	24845167	.	+	.	Parent=Os07t0605800-01
Chr07	irgsp1_rep	CDS	24845168	24846199	.	+	0	Parent=Os07t0605800-01
Chr07	irgsp1_rep	three_prime_UTR	24846200	24846476	.	+	.	Parent=Os07t0605800-01
Chr07	irgsp1_rep	mRNA	24849688	24850036	.	-	.	ID=Os07t0605900-00;Name=Os07t0605900-00;Locus_id=Os07g0605900;Note=Similar to Protein EGG APPARATUS-1.;Transcript_evidence=FP101105 (DDBJ);ORF_evidence=Q5G8Z3 (UniProt);TENOR=Os07t0605900-00
Chr07	irgsp1_rep	CDS	24849722	24850036	.	-	0	Parent=Os07t0605900-00
Chr07	irgsp1_rep	three_prime_UTR	24849688	24849721	.	-	.	Parent=Os07t0605900-00
Chr07	irgsp1_rep	mRNA	24858159	24862379	.	+	.	ID=Os07t0606000-01;Name=Os07t0606000-01;Locus_id=Os07g0606000;Note=Conserved hypothetical protein.;Transcript_evidence=AK106894 (DDBJ%2C Best hit);ORF_evidence=Q5Z4Y4 (UniProt);NIAS_FLcDNA=002-118-G10;TENOR=Os07t0606000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	24858159	24858745	.	+	.	Parent=Os07t0606000-01
Chr07	irgsp1_rep	CDS	24858746	24859289	.	+	0	Parent=Os07t0606000-01
Chr07	irgsp1_rep	CDS	24860442	24860520	.	+	2	Parent=Os07t0606000-01
Chr07	irgsp1_rep	CDS	24861648	24861735	.	+	1	Parent=Os07t0606000-01
Chr07	irgsp1_rep	three_prime_UTR	24861736	24861787	.	+	.	Parent=Os07t0606000-01
Chr07	irgsp1_rep	three_prime_UTR	24861941	24862379	.	+	.	Parent=Os07t0606000-01
Chr07	irgsp1_rep	mRNA	24901922	24906903	.	-	.	ID=Os07t0606400-00;Name=Os07t0606400-00;Locus_id=Os07g0606400;Note=Sulfotransferase domain domain containing protein.;Transcript_evidence=AK372681 (DDBJ);ORF_evidence=Q69J25 (UniProt);GO=Molecular Function: sulfotransferase activity (GO:0008146);InterPro=Sulfotransferase domain (IPR000863);TENOR=Os07t0606400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	24906305	24906903	.	-	0	Parent=Os07t0606400-00
Chr07	irgsp1_rep	CDS	24901922	24902465	.	-	1	Parent=Os07t0606400-00
Chr07	irgsp1_rep	mRNA	24908544	24912218	.	+	.	ID=Os07t0606500-01;Name=Os07t0606500-01;Locus_id=Os07g0606500;Note=Hypothetical conserved gene.;Transcript_evidence=AK068811 (DDBJ%2C Best hit),AK121873 (DDBJ%2C Best hit);ORF_evidence=Q69J41 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J013159C05,J033104F04;TENOR=Os07t0606500-01
Chr07	irgsp1_rep	five_prime_UTR	24908544	24908631	.	+	.	Parent=Os07t0606500-01
Chr07	irgsp1_rep	CDS	24908632	24908790	.	+	0	Parent=Os07t0606500-01
Chr07	irgsp1_rep	CDS	24908991	24909554	.	+	0	Parent=Os07t0606500-01
Chr07	irgsp1_rep	CDS	24909737	24909805	.	+	0	Parent=Os07t0606500-01
Chr07	irgsp1_rep	CDS	24909884	24910006	.	+	0	Parent=Os07t0606500-01
Chr07	irgsp1_rep	CDS	24910087	24910236	.	+	0	Parent=Os07t0606500-01
Chr07	irgsp1_rep	CDS	24910313	24910444	.	+	0	Parent=Os07t0606500-01
Chr07	irgsp1_rep	CDS	24910536	24910615	.	+	0	Parent=Os07t0606500-01
Chr07	irgsp1_rep	CDS	24910752	24910846	.	+	1	Parent=Os07t0606500-01
Chr07	irgsp1_rep	CDS	24911127	24911194	.	+	2	Parent=Os07t0606500-01
Chr07	irgsp1_rep	CDS	24911429	24911571	.	+	0	Parent=Os07t0606500-01
Chr07	irgsp1_rep	CDS	24911692	24911755	.	+	1	Parent=Os07t0606500-01
Chr07	irgsp1_rep	three_prime_UTR	24911756	24912218	.	+	.	Parent=Os07t0606500-01
Chr07	irgsp1_rep	mRNA	24910350	24916533	.	+	.	ID=Os07t0606500-02;Name=Os07t0606500-02;Locus_id=Os07g0606500;Note=Similar to ATP-dependent RNA helicase%2C eIF-4A family.;Transcript_evidence=AK070274 (DDBJ%2C Best hit);ORF_evidence=B8B8B6 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J023047N15;Expression=AK070274;TENOR=Os07t0606500-02;KEGG=Os07t0606500-02
Chr07	irgsp1_rep	five_prime_UTR	24910350	24910351	.	+	.	Parent=Os07t0606500-02
Chr07	irgsp1_rep	CDS	24910352	24910444	.	+	0	Parent=Os07t0606500-02
Chr07	irgsp1_rep	CDS	24910536	24910615	.	+	0	Parent=Os07t0606500-02
Chr07	irgsp1_rep	CDS	24910752	24910846	.	+	1	Parent=Os07t0606500-02
Chr07	irgsp1_rep	CDS	24911127	24911221	.	+	2	Parent=Os07t0606500-02
Chr07	irgsp1_rep	three_prime_UTR	24911222	24912302	.	+	.	Parent=Os07t0606500-02
Chr07	irgsp1_rep	three_prime_UTR	24912406	24912481	.	+	.	Parent=Os07t0606500-02
Chr07	irgsp1_rep	three_prime_UTR	24913022	24913158	.	+	.	Parent=Os07t0606500-02
Chr07	irgsp1_rep	three_prime_UTR	24913250	24913399	.	+	.	Parent=Os07t0606500-02
Chr07	irgsp1_rep	three_prime_UTR	24913481	24913660	.	+	.	Parent=Os07t0606500-02
Chr07	irgsp1_rep	three_prime_UTR	24913739	24913855	.	+	.	Parent=Os07t0606500-02
Chr07	irgsp1_rep	three_prime_UTR	24914120	24914275	.	+	.	Parent=Os07t0606500-02
Chr07	irgsp1_rep	three_prime_UTR	24914789	24914959	.	+	.	Parent=Os07t0606500-02
Chr07	irgsp1_rep	three_prime_UTR	24915059	24915171	.	+	.	Parent=Os07t0606500-02
Chr07	irgsp1_rep	three_prime_UTR	24915249	24915372	.	+	.	Parent=Os07t0606500-02
Chr07	irgsp1_rep	three_prime_UTR	24915541	24915636	.	+	.	Parent=Os07t0606500-02
Chr07	irgsp1_rep	three_prime_UTR	24915719	24915781	.	+	.	Parent=Os07t0606500-02
Chr07	irgsp1_rep	three_prime_UTR	24915879	24916041	.	+	.	Parent=Os07t0606500-02
Chr07	irgsp1_rep	three_prime_UTR	24916178	24916533	.	+	.	Parent=Os07t0606500-02
Chr07	irgsp1_rep	mRNA	24921067	24921998	.	-	.	ID=Os07t0606600-01;Name=Os07t0606600-01;Locus_id=Os07g0606600;CGSNL Gene Symbol=HAP3F;CGSNL Gene Name=HAP3F SUBUNIT OF CCAAT-BOX BINDING COMPLEX;Oryzabase Gene Symbol Synonym(s)=OsHAP3F%2C NF-YB%2C CBF-A%2C NF-YB10%2C OsNF-YB10%2C NFYB10;Oryzabase Gene Name Synonym(s)=NUCLEAR FACTOR-Y subunit B10%2C NUCLEAR FACTOR-Y subunit NF-YB10%2C NF-YB subunit 10%2C NF-YB family 10;Note=Similar to Nuclear factor Y transcription factor subunit B homolog.;Transcript_evidence=AK112118 (DDBJ%2C Best hit),AK111621 (DDBJ%2C Best hit);ORF_evidence=NP_001147727.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: intracellular (GO:0005622),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Transcription factor%2C NFYB/HAP3%2C conserved site (IPR003956),Transcription factor%2C CBFA/NFYB%2C DNA topoisomerase (IPR003957),Transcription factor CBF/NF-Y/archaeal histone (IPR003958),Histone-fold (IPR009072);NIAS_FLcDNA=002-139-C11,J013109P12;Oryzabase=8485;Expression=AK112118;TENOR=Os07t0606600-01;KEGG=Os07t0606600-01
Chr07	irgsp1_rep	five_prime_UTR	24921924	24921998	.	-	.	Parent=Os07t0606600-01
Chr07	irgsp1_rep	CDS	24921249	24921923	.	-	0	Parent=Os07t0606600-01
Chr07	irgsp1_rep	three_prime_UTR	24921067	24921248	.	-	.	Parent=Os07t0606600-01
Chr07	irgsp1_rep	mRNA	24931816	24933033	.	+	.	ID=Os07t0606800-01;Name=Os07t0606800-01;Locus_id=Os07g0606800;Note=Alpha/beta hydrolase fold-3 domain containing protein.;Transcript_evidence=AK109579 (DDBJ%2C Best hit);ORF_evidence=B8B8B8 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Lipase%2C GDXG%2C active site (IPR002168),Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=002-137-A03;Expression=AK109579;TENOR=Os07t0606800-01;KEGG=Os07t0606800-01
Chr07	irgsp1_rep	five_prime_UTR	24931816	24931871	.	+	.	Parent=Os07t0606800-01
Chr07	irgsp1_rep	CDS	24931872	24932857	.	+	0	Parent=Os07t0606800-01
Chr07	irgsp1_rep	CDS	24932872	24932989	.	+	1	Parent=Os07t0606800-01
Chr07	irgsp1_rep	three_prime_UTR	24932990	24933033	.	+	.	Parent=Os07t0606800-01
Chr07	irgsp1_rep	mRNA	24934360	24937062	.	-	.	ID=Os07t0606900-01;Name=Os07t0606900-01;Locus_id=Os07g0606900;Note=Hypothetical conserved gene.;Transcript_evidence=AK242051 (DDBJ%2C Best hit);ORF_evidence=NP_001060232.2 (RefSeq);NIAS_FLcDNA=J075122G11;TENOR=Os07t0606900-01;KEGG=Os07t0606900-01
Chr07	irgsp1_rep	five_prime_UTR	24937062	24937062	.	-	.	Parent=Os07t0606900-01
Chr07	irgsp1_rep	CDS	24936863	24937061	.	-	0	Parent=Os07t0606900-01
Chr07	irgsp1_rep	CDS	24934654	24935486	.	-	2	Parent=Os07t0606900-01
Chr07	irgsp1_rep	three_prime_UTR	24934360	24934653	.	-	.	Parent=Os07t0606900-01
Chr07	irgsp1_rep	mRNA	24935299	24935919	.	+	.	ID=Os07t0607000-00;Name=Os07t0607000-00;Locus_id=Os07g0607000;Note=Non-protein coding transcript.;Transcript_evidence=AK361068 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0607000-00
Chr07	irgsp1_rep	exon	24935299	24935544	.	+	.	Parent=Os07t0607000-00
Chr07	irgsp1_rep	exon	24935705	24935919	.	+	.	Parent=Os07t0607000-00
Chr07	irgsp1_rep	mRNA	24953956	24954811	.	-	.	ID=Os07t0607200-01;Name=Os07t0607200-01;Locus_id=Os07g0607200;Note=Protein of unknown function DUF751 family protein.;Transcript_evidence=AK065746 (DDBJ%2C Best hit);ORF_evidence=A2YNJ6 (UniProt);InterPro=Uncharacterised protein family Ycf33 (IPR008470);NIAS_FLcDNA=J013040K22;Expression=AK065746;TENOR=Os07t0607200-01;KEGG=Os07t0607200-01
Chr07	irgsp1_rep	five_prime_UTR	24954709	24954811	.	-	.	Parent=Os07t0607200-01
Chr07	irgsp1_rep	CDS	24954118	24954708	.	-	0	Parent=Os07t0607200-01
Chr07	irgsp1_rep	three_prime_UTR	24953956	24954117	.	-	.	Parent=Os07t0607200-01
Chr07	irgsp1_rep	mRNA	24956209	24960645	.	+	.	ID=Os07t0607300-01;Name=Os07t0607300-01;Locus_id=Os07g0607300;Note=Hypothetical conserved gene.;Transcript_evidence=AK102747 (DDBJ%2C Best hit);ORF_evidence=A2YNJ7 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: RNA binding (GO:0003723);InterPro=Bromo adjacent homology (BAH) domain (IPR001025),Agenet (IPR008395),Tudor-like%2C plant (IPR014002);NIAS_FLcDNA=J033106K01;Expression=AK102747;TENOR=Os07t0607300-01;KEGG=Os07t0607300-01
Chr07	irgsp1_rep	five_prime_UTR	24956209	24956968	.	+	.	Parent=Os07t0607300-01
Chr07	irgsp1_rep	CDS	24956969	24957275	.	+	0	Parent=Os07t0607300-01
Chr07	irgsp1_rep	CDS	24957963	24958048	.	+	2	Parent=Os07t0607300-01
Chr07	irgsp1_rep	CDS	24958125	24958229	.	+	0	Parent=Os07t0607300-01
Chr07	irgsp1_rep	CDS	24958317	24959111	.	+	0	Parent=Os07t0607300-01
Chr07	irgsp1_rep	CDS	24959299	24959521	.	+	0	Parent=Os07t0607300-01
Chr07	irgsp1_rep	CDS	24959898	24960292	.	+	2	Parent=Os07t0607300-01
Chr07	irgsp1_rep	three_prime_UTR	24960293	24960645	.	+	.	Parent=Os07t0607300-01
Chr07	irgsp1_rep	mRNA	24956309	24960613	.	+	.	ID=Os07t0607300-02;Name=Os07t0607300-02;Locus_id=Os07g0607300;Note=Bromo adjacent region domain containing protein.;Transcript_evidence=AK069102 (DDBJ%2C Best hit);ORF_evidence=Q69J34 (UniProt);GO=Molecular Function: DNA binding (GO:0003677);InterPro=Bromo adjacent homology (BAH) domain (IPR001025);NIAS_FLcDNA=J023004N21;Expression=AK069102;TENOR=Os07t0607300-02;KEGG=Os07t0607300-02
Chr07	irgsp1_rep	five_prime_UTR	24956309	24956968	.	+	.	Parent=Os07t0607300-02
Chr07	irgsp1_rep	CDS	24956969	24957275	.	+	0	Parent=Os07t0607300-02
Chr07	irgsp1_rep	CDS	24957963	24958048	.	+	2	Parent=Os07t0607300-02
Chr07	irgsp1_rep	CDS	24958125	24958229	.	+	0	Parent=Os07t0607300-02
Chr07	irgsp1_rep	CDS	24958317	24958601	.	+	0	Parent=Os07t0607300-02
Chr07	irgsp1_rep	CDS	24958720	24958752	.	+	0	Parent=Os07t0607300-02
Chr07	irgsp1_rep	three_prime_UTR	24958753	24959111	.	+	.	Parent=Os07t0607300-02
Chr07	irgsp1_rep	three_prime_UTR	24959299	24959521	.	+	.	Parent=Os07t0607300-02
Chr07	irgsp1_rep	three_prime_UTR	24959898	24960613	.	+	.	Parent=Os07t0607300-02
Chr07	irgsp1_rep	mRNA	24961190	24964182	.	-	.	ID=Os07t0607400-01;Name=Os07t0607400-01;Locus_id=Os07g0607400;CGSNL Gene Symbol=PME20;CGSNL Gene Name=PECTIN METHYLESTERASE 20;Oryzabase Gene Symbol Synonym(s)=OsPME20%2C OsEnS-109;Oryzabase Gene Name Synonym(s)=pectin methylesterase 20%2C endosperm-specific gene 109;Note=Pectin lyase fold/virulence factor domain containing protein.;Transcript_evidence=AK106797 (DDBJ%2C Best hit);ORF_evidence=B9FYC2 (UniProt);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),Pectinesterase%2C active site (IPR018040);NIAS_FLcDNA=002-116-B06;Oryzabase=13184;Expression=AK106797;TENOR=Os07t0607400-01;KEGG=Os07t0607400-01
Chr07	irgsp1_rep	five_prime_UTR	24964113	24964182	.	-	.	Parent=Os07t0607400-01
Chr07	irgsp1_rep	CDS	24963775	24964112	.	-	0	Parent=Os07t0607400-01
Chr07	irgsp1_rep	CDS	24963429	24963618	.	-	1	Parent=Os07t0607400-01
Chr07	irgsp1_rep	CDS	24963122	24963328	.	-	0	Parent=Os07t0607400-01
Chr07	irgsp1_rep	CDS	24961875	24962114	.	-	0	Parent=Os07t0607400-01
Chr07	irgsp1_rep	three_prime_UTR	24961190	24961874	.	-	.	Parent=Os07t0607400-01
Chr07	irgsp1_rep	mRNA	24965966	24968299	.	-	.	ID=Os07t0607500-01;Name=Os07t0607500-01;Locus_id=Os07g0607500;Note=Protein of unknown function DUF1195 family protein.;Transcript_evidence=AK111068 (DDBJ%2C Best hit);ORF_evidence=A2YNJ9 (UniProt);InterPro=Protein of unknown function DUF1195 (IPR010608);NIAS_FLcDNA=002-175-E03;Expression=AK111068;TENOR=Os07t0607500-01;KEGG=Os07t0607500-01
Chr07	irgsp1_rep	five_prime_UTR	24968251	24968299	.	-	.	Parent=Os07t0607500-01
Chr07	irgsp1_rep	CDS	24967978	24968250	.	-	0	Parent=Os07t0607500-01
Chr07	irgsp1_rep	CDS	24967077	24967298	.	-	0	Parent=Os07t0607500-01
Chr07	irgsp1_rep	three_prime_UTR	24965966	24966125	.	-	.	Parent=Os07t0607500-01
Chr07	irgsp1_rep	mRNA	24973608	24976582	.	+	.	ID=Os07t0607700-01;Name=Os07t0607700-01;Locus_id=Os07g0607700;Note=Di-trans-poly-cis-decaprenylcistransferase family protein.;Transcript_evidence=AK069186 (DDBJ%2C Best hit);ORF_evidence=B6TD36 (UniProt);GO=Molecular Function: transferase activity%2C transferring alkyl or aryl (other than methyl) groups (GO:0016765);InterPro=Di-trans-poly-cis-decaprenylcistransferase-like (IPR001441),Di-trans-poly-cis-decaprenylcistransferase-like%2C conserved site (IPR018520);NIAS_FLcDNA=J023009G19;Expression=AK069186;TENOR=Os07t0607700-01;KEGG=Os07t0607700-01 (EC:2.5.1.-)
Chr07	irgsp1_rep	five_prime_UTR	24973608	24974045	.	+	.	Parent=Os07t0607700-01
Chr07	irgsp1_rep	five_prime_UTR	24975250	24975290	.	+	.	Parent=Os07t0607700-01
Chr07	irgsp1_rep	CDS	24975291	24975326	.	+	0	Parent=Os07t0607700-01
Chr07	irgsp1_rep	CDS	24975503	24976366	.	+	0	Parent=Os07t0607700-01
Chr07	irgsp1_rep	three_prime_UTR	24976367	24976582	.	+	.	Parent=Os07t0607700-01
Chr07	irgsp1_rep	mRNA	24984630	24988273	.	+	.	ID=Os07t0607800-01;Name=Os07t0607800-01;Locus_id=Os07g0607800;Note=Similar to leucine-rich repeat family protein.;Transcript_evidence=AK069010 (DDBJ%2C Best hit);ORF_evidence=NP_190638.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=J013170I18;Expression=AK069010;TENOR=Os07t0607800-01;KEGG=Os07t0607800-01
Chr07	irgsp1_rep	five_prime_UTR	24984630	24984721	.	+	.	Parent=Os07t0607800-01
Chr07	irgsp1_rep	CDS	24984722	24985894	.	+	0	Parent=Os07t0607800-01
Chr07	irgsp1_rep	CDS	24987757	24988014	.	+	0	Parent=Os07t0607800-01
Chr07	irgsp1_rep	three_prime_UTR	24988015	24988273	.	+	.	Parent=Os07t0607800-01
Chr07	irgsp1_rep	mRNA	24985709	24992835	.	+	.	ID=Os07t0607800-02;Name=Os07t0607800-02;Locus_id=Os07g0607800;Note=Protein of unknown function DUF2996 domain containing protein.;Transcript_evidence=AK071711 (DDBJ%2C Best hit);ORF_evidence=Q6YSF1 (UniProt);InterPro=Protein of unknown function DUF2996 (IPR021374);NIAS_FLcDNA=J023112M23;TENOR=Os07t0607800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	24985709	24985894	.	+	.	Parent=Os07t0607800-02
Chr07	irgsp1_rep	five_prime_UTR	24987757	24988107	.	+	.	Parent=Os07t0607800-02
Chr07	irgsp1_rep	five_prime_UTR	24990998	24991110	.	+	.	Parent=Os07t0607800-02
Chr07	irgsp1_rep	CDS	24991111	24991203	.	+	0	Parent=Os07t0607800-02
Chr07	irgsp1_rep	CDS	24991715	24991787	.	+	0	Parent=Os07t0607800-02
Chr07	irgsp1_rep	CDS	24992199	24992392	.	+	2	Parent=Os07t0607800-02
Chr07	irgsp1_rep	three_prime_UTR	24992393	24992835	.	+	.	Parent=Os07t0607800-02
Chr07	irgsp1_rep	mRNA	24993921	24996378	.	+	.	ID=Os07t0608100-01;Name=Os07t0608100-01;Locus_id=Os07g0608100;Note=Conserved hypothetical protein.;Transcript_evidence=AK068225 (DDBJ%2C Best hit);ORF_evidence=A2YNK3 (UniProt);NIAS_FLcDNA=J013145L10;Expression=AK068225;TENOR=Os07t0608100-01;KEGG=Os07t0608100-01
Chr07	irgsp1_rep	five_prime_UTR	24993921	24994005	.	+	.	Parent=Os07t0608100-01
Chr07	irgsp1_rep	CDS	24994006	24994294	.	+	0	Parent=Os07t0608100-01
Chr07	irgsp1_rep	CDS	24994380	24994457	.	+	2	Parent=Os07t0608100-01
Chr07	irgsp1_rep	CDS	24995534	24995709	.	+	2	Parent=Os07t0608100-01
Chr07	irgsp1_rep	CDS	24995878	24996072	.	+	0	Parent=Os07t0608100-01
Chr07	irgsp1_rep	three_prime_UTR	24996073	24996378	.	+	.	Parent=Os07t0608100-01
Chr07	irgsp1_rep	mRNA	24993955	24996378	.	+	.	ID=Os07t0608100-02;Name=Os07t0608100-02;Locus_id=Os07g0608100;Note=Conserved hypothetical protein.;Transcript_evidence=AK102811 (DDBJ%2C Best hit),AK109383 (DDBJ%2C Best hit);ORF_evidence=A2YNK3 (UniProt);NIAS_FLcDNA=J033108L06,006-210-F06;TENOR=Os07t0608100-02
Chr07	irgsp1_rep	five_prime_UTR	24993955	24994005	.	+	.	Parent=Os07t0608100-02
Chr07	irgsp1_rep	CDS	24994006	24994294	.	+	0	Parent=Os07t0608100-02
Chr07	irgsp1_rep	CDS	24994380	24994457	.	+	2	Parent=Os07t0608100-02
Chr07	irgsp1_rep	CDS	24995534	24995709	.	+	2	Parent=Os07t0608100-02
Chr07	irgsp1_rep	CDS	24995878	24996072	.	+	0	Parent=Os07t0608100-02
Chr07	irgsp1_rep	three_prime_UTR	24996073	24996378	.	+	.	Parent=Os07t0608100-02
Chr07	irgsp1_rep	mRNA	24996740	25001214	.	-	.	ID=Os07t0608200-01;Name=Os07t0608200-01;Locus_id=Os07g0608200;CGSNL Gene Symbol=HAP2G;CGSNL Gene Name=HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX;Oryzabase Gene Symbol Synonym(s)=OsHAP2G%2C NF-YA%2C CBF-B%2C NF-YA6%2C OsNF-YA6%2C NFYA6;Oryzabase Gene Name Synonym(s)=NUCLEAR FACTOR-Y subunit A6%2C NUCLEAR FACTOR-Y subunit NF-YA6%2C NF-YA transcription factor 6%2C NF-YA subunit 6%2C NF-YA family 6;Note=Similar to CCAAT-binding transcription factor subunit B (CBF-B) (NF-Y protein chain A) (NF-YA) (CAAT-box DNA binding protein subunit A). Splice isoform Short.;Transcript_evidence=AK101684 (DDBJ%2C Best hit);ORF_evidence=B6SPF1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Cellular Component: CCAAT-binding factor complex (GO:0016602),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=CCAAT-binding transcription factor%2C subunit B (IPR001289),CCAAT-binding factor%2C conserved site (IPR018362);NIAS_FLcDNA=J033058N01;Oryzabase=8479;Expression=AK101684;TENOR=Os07t0608200-01;KEGG=Os07t0608200-01
Chr07	irgsp1_rep	five_prime_UTR	25001085	25001214	.	-	.	Parent=Os07t0608200-01
Chr07	irgsp1_rep	five_prime_UTR	24999727	24999786	.	-	.	Parent=Os07t0608200-01
Chr07	irgsp1_rep	CDS	24999670	24999726	.	-	0	Parent=Os07t0608200-01
Chr07	irgsp1_rep	CDS	24999426	24999576	.	-	0	Parent=Os07t0608200-01
Chr07	irgsp1_rep	CDS	24998671	24998777	.	-	2	Parent=Os07t0608200-01
Chr07	irgsp1_rep	CDS	24998521	24998589	.	-	0	Parent=Os07t0608200-01
Chr07	irgsp1_rep	CDS	24997787	24997954	.	-	0	Parent=Os07t0608200-01
Chr07	irgsp1_rep	CDS	24997046	24997408	.	-	0	Parent=Os07t0608200-01
Chr07	irgsp1_rep	three_prime_UTR	24996740	24997045	.	-	.	Parent=Os07t0608200-01
Chr07	irgsp1_rep	mRNA	25007223	25012581	.	+	.	ID=Os07t0608300-01;Name=Os07t0608300-01;Locus_id=Os07g0608300;Oryzabase Gene Symbol Synonym(s)=OsPOP16%2C POP16;Oryzabase Gene Name Synonym(s)=Prolyl Oligopeptidase 16%2C PROLYL OLIGOPEPTIDASE 16;Note=Alpha/beta hydrolase fold-1 domain containing protein.;Transcript_evidence=AK073927 (DDBJ%2C Best hit);ORF_evidence=NP_568395.1 (RefSeq);NIAS_FLcDNA=J033071K15;Oryzabase=20024;Expression=AK073927;TENOR=Os07t0608300-01;KEGG=Os07t0608300-01
Chr07	irgsp1_rep	five_prime_UTR	25007223	25007370	.	+	.	Parent=Os07t0608300-01
Chr07	irgsp1_rep	CDS	25007371	25007606	.	+	0	Parent=Os07t0608300-01
Chr07	irgsp1_rep	CDS	25009107	25009144	.	+	1	Parent=Os07t0608300-01
Chr07	irgsp1_rep	CDS	25009246	25009324	.	+	2	Parent=Os07t0608300-01
Chr07	irgsp1_rep	CDS	25009463	25009517	.	+	1	Parent=Os07t0608300-01
Chr07	irgsp1_rep	CDS	25009595	25009711	.	+	0	Parent=Os07t0608300-01
Chr07	irgsp1_rep	CDS	25010722	25010886	.	+	0	Parent=Os07t0608300-01
Chr07	irgsp1_rep	CDS	25011283	25011538	.	+	0	Parent=Os07t0608300-01
Chr07	irgsp1_rep	CDS	25012063	25012079	.	+	2	Parent=Os07t0608300-01
Chr07	irgsp1_rep	three_prime_UTR	25012080	25012581	.	+	.	Parent=Os07t0608300-01
Chr07	irgsp1_rep	mRNA	25007262	25012581	.	+	.	ID=Os07t0608300-02;Name=Os07t0608300-02;Locus_id=Os07g0608300;Oryzabase Gene Symbol Synonym(s)=OsPOP16%2C POP16;Oryzabase Gene Name Synonym(s)=Prolyl Oligopeptidase 16%2C PROLYL OLIGOPEPTIDASE 16;Note=Alpha/beta hydrolase fold-1 domain containing protein.;Transcript_evidence=AK106096 (DDBJ%2C Best hit);ORF_evidence=NP_568395.1 (RefSeq);NIAS_FLcDNA=001-207-C01;Oryzabase=20024;Expression=AK106096;TENOR=Os07t0608300-02;KEGG=Os07t0608300-02
Chr07	irgsp1_rep	five_prime_UTR	25007262	25007370	.	+	.	Parent=Os07t0608300-02
Chr07	irgsp1_rep	CDS	25007371	25007606	.	+	0	Parent=Os07t0608300-02
Chr07	irgsp1_rep	CDS	25009107	25009144	.	+	1	Parent=Os07t0608300-02
Chr07	irgsp1_rep	CDS	25009246	25009324	.	+	2	Parent=Os07t0608300-02
Chr07	irgsp1_rep	CDS	25009463	25009517	.	+	1	Parent=Os07t0608300-02
Chr07	irgsp1_rep	CDS	25009595	25009711	.	+	0	Parent=Os07t0608300-02
Chr07	irgsp1_rep	CDS	25010722	25010886	.	+	0	Parent=Os07t0608300-02
Chr07	irgsp1_rep	CDS	25011283	25011538	.	+	0	Parent=Os07t0608300-02
Chr07	irgsp1_rep	CDS	25012063	25012079	.	+	2	Parent=Os07t0608300-02
Chr07	irgsp1_rep	three_prime_UTR	25012080	25012581	.	+	.	Parent=Os07t0608300-02
Chr07	irgsp1_rep	mRNA	25013549	25017774	.	+	.	ID=Os07t0608400-01;Name=Os07t0608400-01;Locus_id=Os07g0608400;Note=Similar to nucleic acid binding protein [Oryza sativa (japonica cultivar-group)].;Transcript_evidence=AK109447 (DDBJ%2C Best hit);ORF_evidence=D9ZIL5 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-type%2C conserved site (IPR019786),Zinc finger%2C PHD-finger (IPR019787),Protein of unknown function DUF3594 (IPR021998);NIAS_FLcDNA=001-104-H11;Expression=AK109447;TENOR=Os07t0608400-01;KEGG=Os07t0608400-01
Chr07	irgsp1_rep	five_prime_UTR	25013549	25013622	.	+	.	Parent=Os07t0608400-01
Chr07	irgsp1_rep	CDS	25013623	25013713	.	+	0	Parent=Os07t0608400-01
Chr07	irgsp1_rep	CDS	25013884	25013916	.	+	2	Parent=Os07t0608400-01
Chr07	irgsp1_rep	CDS	25015838	25016066	.	+	2	Parent=Os07t0608400-01
Chr07	irgsp1_rep	CDS	25016763	25016889	.	+	1	Parent=Os07t0608400-01
Chr07	irgsp1_rep	CDS	25017110	25017466	.	+	0	Parent=Os07t0608400-01
Chr07	irgsp1_rep	three_prime_UTR	25017467	25017774	.	+	.	Parent=Os07t0608400-01
Chr07	irgsp1_rep	mRNA	25018623	25019863	.	+	.	ID=Os07t0608450-01;Name=Os07t0608450-01;Locus_id=Os07g0608450;Note=Non-protein coding transcript.;Transcript_evidence=AK288746 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090064I03;TENOR=Os07t0608450-01
Chr07	irgsp1_rep	exon	25018623	25019863	.	+	.	Parent=Os07t0608450-01
Chr07	irgsp1_rep	mRNA	25019607	25021710	.	-	.	ID=Os07t0608500-01;Name=Os07t0608500-01;Locus_id=Os07g0608500;Oryzabase Gene Name Synonym(s)=Ribosomal protein S3;Note=Similar to Ribosomal protein S3 (Fragment).;Transcript_evidence=AK066905 (DDBJ%2C Best hit);ORF_evidence=B6TB97 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: small ribosomal subunit (GO:0015935),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S3%2C C-terminal (IPR001351),K Homology%2C type 2 (IPR004044),Ribosomal protein S3%2C eukaryotic/archaeal (IPR005703),K Homology%2C prokaryotic type (IPR009019),K homology domain-like%2C alpha/beta (IPR015946),Ribosomal protein S3%2C conserved site (IPR018280);NIAS_FLcDNA=J013092O21;Oryzabase=17696;Expression=AK066905;TENOR=Os07t0608500-01;KEGG=Os07t0608500-01
Chr07	irgsp1_rep	five_prime_UTR	25021631	25021710	.	-	.	Parent=Os07t0608500-01
Chr07	irgsp1_rep	CDS	25021595	25021630	.	-	0	Parent=Os07t0608500-01
Chr07	irgsp1_rep	CDS	25021351	25021498	.	-	0	Parent=Os07t0608500-01
Chr07	irgsp1_rep	CDS	25021076	25021247	.	-	2	Parent=Os07t0608500-01
Chr07	irgsp1_rep	CDS	25020219	25020273	.	-	1	Parent=Os07t0608500-01
Chr07	irgsp1_rep	CDS	25020001	25020132	.	-	0	Parent=Os07t0608500-01
Chr07	irgsp1_rep	CDS	25019749	25019907	.	-	0	Parent=Os07t0608500-01
Chr07	irgsp1_rep	three_prime_UTR	25019607	25019748	.	-	.	Parent=Os07t0608500-01
Chr07	irgsp1_rep	mRNA	25036622	25039078	.	-	.	ID=Os07t0608700-01;Name=Os07t0608700-01;Locus_id=Os07g0608700;Oryzabase Gene Name Synonym(s)=Sm gene%2C Sm family protein;Note=Similar to Small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G) (Sm-G) (SmG).;Transcript_evidence=AK120837 (DDBJ%2C Best hit);ORF_evidence=NP_001148720.1 (RefSeq);InterPro=Like-Sm ribonucleoprotein (LSM) domain (IPR001163),Like-Sm ribonucleoprotein (LSM) domain%2C eukaryotic/archaea-type (IPR006649),Like-Sm ribonucleoprotein (LSM)-related domain (IPR010920);NIAS_FLcDNA=J023020L02;Oryzabase=15653;Expression=AK120837;TENOR=Os07t0608700-01;KEGG=Os07t0608700-01
Chr07	irgsp1_rep	five_prime_UTR	25038955	25039078	.	-	.	Parent=Os07t0608700-01
Chr07	irgsp1_rep	CDS	25038920	25038954	.	-	0	Parent=Os07t0608700-01
Chr07	irgsp1_rep	CDS	25038789	25038811	.	-	1	Parent=Os07t0608700-01
Chr07	irgsp1_rep	CDS	25037275	25037396	.	-	2	Parent=Os07t0608700-01
Chr07	irgsp1_rep	CDS	25036905	25036928	.	-	0	Parent=Os07t0608700-01
Chr07	irgsp1_rep	three_prime_UTR	25036622	25036904	.	-	.	Parent=Os07t0608700-01
Chr07	irgsp1_rep	mRNA	25036657	25039074	.	-	.	ID=Os07t0608700-02;Name=Os07t0608700-02;Locus_id=Os07g0608700;Oryzabase Gene Name Synonym(s)=Sm gene%2C Sm family protein;Note=Similar to small nuclear ribonucleoprotein G.;Transcript_evidence=AK243024 (DDBJ%2C Best hit);ORF_evidence=NP_001148720.1 (RefSeq);InterPro=Like-Sm ribonucleoprotein (LSM) domain (IPR001163),Like-Sm ribonucleoprotein (LSM) domain%2C eukaryotic/archaea-type (IPR006649),Like-Sm ribonucleoprotein (LSM)-related domain (IPR010920);NIAS_FLcDNA=J100001P06;Oryzabase=15653;TENOR=Os07t0608700-02;KEGG=Os07t0608700-02
Chr07	irgsp1_rep	five_prime_UTR	25038955	25039074	.	-	.	Parent=Os07t0608700-02
Chr07	irgsp1_rep	CDS	25038920	25038954	.	-	0	Parent=Os07t0608700-02
Chr07	irgsp1_rep	CDS	25038789	25038811	.	-	1	Parent=Os07t0608700-02
Chr07	irgsp1_rep	CDS	25037275	25037396	.	-	2	Parent=Os07t0608700-02
Chr07	irgsp1_rep	CDS	25036874	25036936	.	-	0	Parent=Os07t0608700-02
Chr07	irgsp1_rep	three_prime_UTR	25036657	25036873	.	-	.	Parent=Os07t0608700-02
Chr07	irgsp1_rep	mRNA	25039237	25043732	.	+	.	ID=Os07t0608800-01;Name=Os07t0608800-01;Locus_id=Os07g0608800;Oryzabase Gene Symbol Synonym(s)=OsRFP;Oryzabase Gene Name Synonym(s)=RING finger protein;Note=Similar to Peroxisome assembly protein 10 (Peroxin-10) (AthPEX10) (Pex10p) (PER8).;Transcript_evidence=AK059637 (DDBJ%2C Best hit);ORF_evidence=B9U2H6 (UniProt);GO=Biological Process: peroxisome organization (GO:0007031),Cellular Component: peroxisomal membrane (GO:0005778),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Pex%2C N-terminal (IPR006845),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=001-031-A11;Oryzabase=21039;Expression=AK059637;TENOR=Os07t0608800-01;KEGG=Os07t0608800-01
Chr07	irgsp1_rep	five_prime_UTR	25039237	25039309	.	+	.	Parent=Os07t0608800-01
Chr07	irgsp1_rep	CDS	25039310	25039496	.	+	0	Parent=Os07t0608800-01
Chr07	irgsp1_rep	CDS	25039588	25039619	.	+	2	Parent=Os07t0608800-01
Chr07	irgsp1_rep	CDS	25040370	25040459	.	+	0	Parent=Os07t0608800-01
Chr07	irgsp1_rep	CDS	25041021	25041115	.	+	0	Parent=Os07t0608800-01
Chr07	irgsp1_rep	CDS	25041215	25041419	.	+	1	Parent=Os07t0608800-01
Chr07	irgsp1_rep	CDS	25041591	25041660	.	+	0	Parent=Os07t0608800-01
Chr07	irgsp1_rep	CDS	25042144	25042222	.	+	2	Parent=Os07t0608800-01
Chr07	irgsp1_rep	CDS	25042439	25042572	.	+	1	Parent=Os07t0608800-01
Chr07	irgsp1_rep	CDS	25042694	25042782	.	+	2	Parent=Os07t0608800-01
Chr07	irgsp1_rep	CDS	25043073	25043158	.	+	0	Parent=Os07t0608800-01
Chr07	irgsp1_rep	CDS	25043254	25043356	.	+	1	Parent=Os07t0608800-01
Chr07	irgsp1_rep	three_prime_UTR	25043357	25043732	.	+	.	Parent=Os07t0608800-01
Chr07	irgsp1_rep	mRNA	25045353	25048382	.	+	.	ID=Os07t0608900-01;Name=Os07t0608900-01;Locus_id=Os07g0608900;Note=Similar to cDNA clone:001-031-A11%2C full insert sequence (Fragment).;Transcript_evidence=AK068639 (DDBJ%2C Best hit);ORF_evidence=B7E3W3 (UniProt);NIAS_FLcDNA=J013155J08;TENOR=Os07t0608900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	25045353	25046085	.	+	.	Parent=Os07t0608900-01
Chr07	irgsp1_rep	CDS	25046086	25046171	.	+	0	Parent=Os07t0608900-01
Chr07	irgsp1_rep	CDS	25046887	25047091	.	+	1	Parent=Os07t0608900-01
Chr07	irgsp1_rep	CDS	25047707	25047772	.	+	0	Parent=Os07t0608900-01
Chr07	irgsp1_rep	three_prime_UTR	25047773	25047785	.	+	.	Parent=Os07t0608900-01
Chr07	irgsp1_rep	three_prime_UTR	25048145	25048382	.	+	.	Parent=Os07t0608900-01
Chr07	irgsp1_rep	mRNA	25049566	25050625	.	+	.	ID=Os07t0609000-01;Name=Os07t0609000-01;Locus_id=Os07g0609000;Note=Stress responsive alpha-beta barrel domain containing protein.;Transcript_evidence=AK104294 (DDBJ%2C Best hit),AK067330 (DDBJ%2C Best hit),AK104937 (DDBJ%2C Best hit),AK106125 (DDBJ%2C Best hit);ORF_evidence=Q94LL8 (UniProt);InterPro=Dimeric alpha-beta barrel (IPR011008),Stress responsive alpha-beta barrel (IPR013097);NIAS_FLcDNA=001-007-H07,J013101E17,001-106-B09,001-207-F03;TENOR=Os07t0609000-01
Chr07	irgsp1_rep	five_prime_UTR	25049566	25049568	.	+	.	Parent=Os07t0609000-01
Chr07	irgsp1_rep	CDS	25049569	25050354	.	+	0	Parent=Os07t0609000-01
Chr07	irgsp1_rep	three_prime_UTR	25050355	25050625	.	+	.	Parent=Os07t0609000-01
Chr07	irgsp1_rep	mRNA	25049629	25050645	.	+	.	ID=Os07t0609000-04;Name=Os07t0609000-04;Locus_id=Os07g0609000;Note=Dimeric alpha-beta barrel domain containing protein.;Transcript_evidence=AK104406 (DDBJ%2C Best hit);ORF_evidence=Q94LL8 (UniProt);InterPro=Dimeric alpha-beta barrel (IPR011008),Stress responsive alpha-beta barrel (IPR013097);NIAS_FLcDNA=006-203-D12;TENOR=Os07t0609000-04;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	25049629	25049661	.	+	.	Parent=Os07t0609000-04
Chr07	irgsp1_rep	CDS	25049662	25050354	.	+	0	Parent=Os07t0609000-04
Chr07	irgsp1_rep	three_prime_UTR	25050355	25050645	.	+	.	Parent=Os07t0609000-04
Chr07	irgsp1_rep	mRNA	25052480	25053268	.	+	.	ID=Os07t0609100-00;Name=Os07t0609100-00;Locus_id=Os07g0609100;Note=Hypothetical conserved gene.;Transcript_evidence=BT036984 (DDBJ);ORF_evidence=Q6YTX4 (UniProt);GO=Biological Process: intracellular signal transduction (GO:0035556);InterPro=Protein kinase C-like%2C phorbol ester/diacylglycerol binding (IPR002219);TENOR=Os07t0609100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	25052480	25052491	.	+	.	Parent=Os07t0609100-00
Chr07	irgsp1_rep	CDS	25052492	25053268	.	+	0	Parent=Os07t0609100-00
Chr07	irgsp1_rep	mRNA	25053924	25054454	.	+	.	ID=Os07t0609200-00;Name=Os07t0609200-00;Locus_id=Os07g0609200;Note=Non-protein coding transcript.;Transcript_evidence=tplb0001l19 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os07t0609200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	exon	25053924	25054454	.	+	.	Parent=Os07t0609200-00
Chr07	irgsp1_rep	mRNA	25059656	25061534	.	-	.	ID=Os07t0609550-01;Name=Os07t0609550-01;Locus_id=Os07g0609550;Note=Hypothetical conserved gene.;Transcript_evidence=AK241718 (DDBJ%2C Best hit);ORF_evidence=Q94LL9 (UniProt);NIAS_FLcDNA=J065197P21;TENOR=Os07t0609550-01;KEGG=Os07t0609550-01
Chr07	irgsp1_rep	five_prime_UTR	25061531	25061534	.	-	.	Parent=Os07t0609550-01
Chr07	irgsp1_rep	CDS	25061090	25061530	.	-	0	Parent=Os07t0609550-01
Chr07	irgsp1_rep	three_prime_UTR	25060948	25061089	.	-	.	Parent=Os07t0609550-01
Chr07	irgsp1_rep	three_prime_UTR	25060330	25060389	.	-	.	Parent=Os07t0609550-01
Chr07	irgsp1_rep	three_prime_UTR	25059656	25060215	.	-	.	Parent=Os07t0609550-01
Chr07	irgsp1_rep	mRNA	25100400	25104600	.	+	.	ID=Os07t0609766-01;Name=Os07t0609766-01;Locus_id=Os07g0609766;RAP-DB Gene Symbol Synonym(s)=OsLFR;RAP-DB Gene Name Synonym(s)=LEAF AND FLOWER-RELATED;Note=Ortholog of the Arabidopsis SWI/SNF Chromatin remodeling complex (CRC) component LFR%2C Armadillo repeat (ARM-repeat) family protein%2C Regulation of seed development%2C Early-stage of embryo and endosperm development;Transcript_evidence=Inferred from literature;ORF_evidence=Q6YTW6;InterPro=Armadillo-type fold (IPR016024),Armadillo-like helical (IPR011989),SWI/SNF-like complex subunit BAF250%2C C-terminal (IPR033388);Manual Curation=August 19%2C 2020;Literature_PMID=32808364;TENOR=Os07t0609766-00;Subcellular location=nucleus (GO:0005634)
Chr07	irgsp1_rep	five_prime_UTR	25100400	25100506	.	+	.	Parent=Os07t0609766-01
Chr07	irgsp1_rep	five_prime_UTR	25100631	25100646	.	+	.	Parent=Os07t0609766-01
Chr07	irgsp1_rep	CDS	25100647	25100842	.	+	0	Parent=Os07t0609766-01
Chr07	irgsp1_rep	CDS	25101456	25101625	.	+	2	Parent=Os07t0609766-01
Chr07	irgsp1_rep	CDS	25102477	25102610	.	+	0	Parent=Os07t0609766-01
Chr07	irgsp1_rep	CDS	25102702	25102949	.	+	1	Parent=Os07t0609766-01
Chr07	irgsp1_rep	CDS	25103379	25103484	.	+	2	Parent=Os07t0609766-01
Chr07	irgsp1_rep	CDS	25103572	25103710	.	+	1	Parent=Os07t0609766-01
Chr07	irgsp1_rep	CDS	25103838	25103965	.	+	0	Parent=Os07t0609766-01
Chr07	irgsp1_rep	CDS	25104052	25104313	.	+	1	Parent=Os07t0609766-01
Chr07	irgsp1_rep	three_prime_UTR	25104314	25104600	.	+	.	Parent=Os07t0609766-01
Chr07	irgsp1_rep	mRNA	25117766	25118480	.	+	.	ID=Os07t0610200-00;Name=Os07t0610200-00;Locus_id=Os07g0610200;Note=Similar to Protein binding protein.;Transcript_evidence=BT036984 (DDBJ);ORF_evidence=B6U5C9 (UniProt);GO=Biological Process: intracellular signal transduction (GO:0035556),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: protein-disulfide reductase activity (GO:0047134);InterPro=Protein kinase C-like%2C phorbol ester/diacylglycerol binding (IPR002219),C1-like (IPR011424);TENOR=Os07t0610200-00;KEGG=Os07t0610200-00
Chr07	irgsp1_rep	five_prime_UTR	25117766	25117766	.	+	.	Parent=Os07t0610200-00
Chr07	irgsp1_rep	CDS	25117767	25118480	.	+	0	Parent=Os07t0610200-00
Chr07	irgsp1_rep	mRNA	25119626	25120031	.	-	.	ID=Os07t0610400-00;Name=Os07t0610400-00;Locus_id=Os07g0610400;Note=Similar to prenylated Rab receptor 2.;Transcript_evidence=tplb0040f16 (Wheat FLcDNA);ORF_evidence=NP_001151354.1 (RefSeq);InterPro=Prenylated rab acceptor PRA1 (IPR004895);TENOR=Os07t0610400-00;KEGG=Os07t0610400-00
Chr07	irgsp1_rep	CDS	25119816	25120031	.	-	0	Parent=Os07t0610400-00
Chr07	irgsp1_rep	three_prime_UTR	25119626	25119815	.	-	.	Parent=Os07t0610400-00
Chr07	irgsp1_rep	mRNA	25156916	25157997	.	+	.	ID=Os07t0611200-00;Name=Os07t0611200-00;Locus_id=Os07g0611200;Note=Similar to Protein binding protein.;Transcript_evidence=BT036984 (DDBJ);ORF_evidence=B6U5C9 (UniProt);GO=Biological Process: intracellular signal transduction (GO:0035556),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: protein-disulfide reductase activity (GO:0047134);InterPro=Protein kinase C-like%2C phorbol ester/diacylglycerol binding (IPR002219),C1-like (IPR011424);TENOR=Os07t0611200-00;KEGG=Os07t0611200-00
Chr07	irgsp1_rep	five_prime_UTR	25156916	25156916	.	+	.	Parent=Os07t0611200-00
Chr07	irgsp1_rep	CDS	25156917	25157472	.	+	0	Parent=Os07t0611200-00
Chr07	irgsp1_rep	CDS	25157772	25157842	.	+	2	Parent=Os07t0611200-00
Chr07	irgsp1_rep	three_prime_UTR	25157843	25157997	.	+	.	Parent=Os07t0611200-00
Chr07	irgsp1_rep	mRNA	25167044	25167730	.	+	.	ID=Os07t0611400-00;Name=Os07t0611400-00;Locus_id=Os07g0611400;Note=Protein kinase C-like%2C phorbol ester/diacylglycerol binding domain containing protein.;Transcript_evidence=EU972444 (DDBJ);ORF_evidence=Q8H5Y7 (UniProt);GO=Biological Process: intracellular signal transduction (GO:0035556),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: protein-disulfide reductase activity (GO:0047134);InterPro=Protein kinase C-like%2C phorbol ester/diacylglycerol binding (IPR002219),C1-like (IPR011424);TENOR=Os07t0611400-00
Chr07	irgsp1_rep	CDS	25167044	25167730	.	+	0	Parent=Os07t0611400-00
Chr07	irgsp1_rep	mRNA	25187993	25188788	.	+	.	ID=Os07t0611500-00;Name=Os07t0611500-00;Locus_id=Os07g0611500;Note=C1-like domain containing protein.;Transcript_evidence=BT036984 (DDBJ);ORF_evidence=B6U5C9 (UniProt);GO=Biological Process: intracellular signal transduction (GO:0035556),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: protein-disulfide reductase activity (GO:0047134);InterPro=Protein kinase C-like%2C phorbol ester/diacylglycerol binding (IPR002219),C1-like (IPR011424);TENOR=Os07t0611500-00;KEGG=Os07t0611500-00
Chr07	irgsp1_rep	five_prime_UTR	25187993	25188001	.	+	.	Parent=Os07t0611500-00
Chr07	irgsp1_rep	CDS	25188002	25188781	.	+	0	Parent=Os07t0611500-00
Chr07	irgsp1_rep	three_prime_UTR	25188782	25188788	.	+	.	Parent=Os07t0611500-00
Chr07	irgsp1_rep	mRNA	25192316	25194915	.	+	.	ID=Os07t0611600-01;Name=Os07t0611600-01;Locus_id=Os07g0611600;Note=DNA-directed RNA polymerase III%2C subunit Rpc31 domain containing protein.;Transcript_evidence=AK102547 (DDBJ%2C Best hit);ORF_evidence=NP_001144128.1 (RefSeq);InterPro=DNA-directed RNA polymerase III%2C subunit Rpc31 (IPR024661);NIAS_FLcDNA=J033096O12;Expression=AK102547;TENOR=Os07t0611600-01;KEGG=Os07t0611600-01
Chr07	irgsp1_rep	five_prime_UTR	25192316	25192433	.	+	.	Parent=Os07t0611600-01
Chr07	irgsp1_rep	CDS	25192434	25192529	.	+	0	Parent=Os07t0611600-01
Chr07	irgsp1_rep	CDS	25192700	25192832	.	+	0	Parent=Os07t0611600-01
Chr07	irgsp1_rep	CDS	25193463	25193585	.	+	2	Parent=Os07t0611600-01
Chr07	irgsp1_rep	CDS	25193683	25193736	.	+	2	Parent=Os07t0611600-01
Chr07	irgsp1_rep	CDS	25193929	25193973	.	+	2	Parent=Os07t0611600-01
Chr07	irgsp1_rep	CDS	25194211	25194308	.	+	2	Parent=Os07t0611600-01
Chr07	irgsp1_rep	CDS	25194503	25194554	.	+	0	Parent=Os07t0611600-01
Chr07	irgsp1_rep	CDS	25194672	25194691	.	+	2	Parent=Os07t0611600-01
Chr07	irgsp1_rep	three_prime_UTR	25194692	25194915	.	+	.	Parent=Os07t0611600-01
Chr07	irgsp1_rep	mRNA	25193475	25194901	.	+	.	ID=Os07t0611600-02;Name=Os07t0611600-02;Locus_id=Os07g0611600;Note=Hypothetical conserved gene.;Transcript_evidence=AK059431 (DDBJ%2C Best hit);ORF_evidence=B8B8D8 (UniProt);InterPro=DNA-directed RNA polymerase III%2C subunit Rpc31 (IPR024661);NIAS_FLcDNA=001-027-F03;Expression=AK059431;TENOR=Os07t0611600-02;KEGG=Os07t0611600-02
Chr07	irgsp1_rep	five_prime_UTR	25193475	25193476	.	+	.	Parent=Os07t0611600-02
Chr07	irgsp1_rep	CDS	25193477	25193585	.	+	0	Parent=Os07t0611600-02
Chr07	irgsp1_rep	CDS	25193683	25193736	.	+	2	Parent=Os07t0611600-02
Chr07	irgsp1_rep	CDS	25193929	25193973	.	+	2	Parent=Os07t0611600-02
Chr07	irgsp1_rep	CDS	25194211	25194308	.	+	2	Parent=Os07t0611600-02
Chr07	irgsp1_rep	CDS	25194503	25194554	.	+	0	Parent=Os07t0611600-02
Chr07	irgsp1_rep	CDS	25194672	25194691	.	+	2	Parent=Os07t0611600-02
Chr07	irgsp1_rep	three_prime_UTR	25194692	25194901	.	+	.	Parent=Os07t0611600-02
Chr07	irgsp1_rep	mRNA	25195589	25208995	.	+	.	ID=Os07t0611700-01;Name=Os07t0611700-01;Locus_id=Os07g0611700;Note=Peptidase C1A%2C papain family protein.;Transcript_evidence=AK109158 (DDBJ%2C Best hit);ORF_evidence=B9FU69 (UniProt);InterPro=Proteinase inhibitor I29%2C cathepsin propeptide (IPR013201);NIAS_FLcDNA=002-155-G05;Expression=AK109158;TENOR=Os07t0611700-01;KEGG=Os07t0611700-01
Chr07	irgsp1_rep	five_prime_UTR	25195589	25195603	.	+	.	Parent=Os07t0611700-01
Chr07	irgsp1_rep	CDS	25195604	25195726	.	+	0	Parent=Os07t0611700-01
Chr07	irgsp1_rep	CDS	25195818	25195929	.	+	0	Parent=Os07t0611700-01
Chr07	irgsp1_rep	CDS	25208101	25208699	.	+	2	Parent=Os07t0611700-01
Chr07	irgsp1_rep	three_prime_UTR	25208700	25208995	.	+	.	Parent=Os07t0611700-01
Chr07	irgsp1_rep	mRNA	25209847	25210624	.	-	.	ID=Os07t0611950-00;Name=Os07t0611950-00;Locus_id=Os07g0611950;Note=Conserved hypothetical protein.;Transcript_evidence=EU946362 (DDBJ);ORF_evidence=Q8H5Y0 (UniProt);TENOR=Os07t0611950-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	25210568	25210624	.	-	.	Parent=Os07t0611950-00
Chr07	irgsp1_rep	five_prime_UTR	25210406	25210465	.	-	.	Parent=Os07t0611950-00
Chr07	irgsp1_rep	CDS	25210394	25210405	.	-	0	Parent=Os07t0611950-00
Chr07	irgsp1_rep	CDS	25209897	25209989	.	-	0	Parent=Os07t0611950-00
Chr07	irgsp1_rep	three_prime_UTR	25209847	25209896	.	-	.	Parent=Os07t0611950-00
Chr07	irgsp1_rep	mRNA	25211271	25212270	.	+	.	ID=Os07t0612200-00;Name=Os07t0612200-00;Locus_id=Os07g0612200;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A2YNM2 (UniProt);TENOR=Os07t0612200-00;KEGG=Os07t0612200-00
Chr07	irgsp1_rep	CDS	25211271	25211580	.	+	0	Parent=Os07t0612200-00
Chr07	irgsp1_rep	CDS	25211679	25211920	.	+	2	Parent=Os07t0612200-00
Chr07	irgsp1_rep	CDS	25211986	25212270	.	+	0	Parent=Os07t0612200-00
Chr07	irgsp1_rep	mRNA	25214544	25216620	.	-	.	ID=Os07t0612400-01;Name=Os07t0612400-01;Locus_id=Os07g0612400;Note=Alpha/beta hydrolase family protein.;Transcript_evidence=AK119994 (DDBJ%2C Best hit);ORF_evidence=B6TP84 (UniProt);InterPro=Alpha/beta hydrolase fold-1 (IPR000073);NIAS_FLcDNA=002-184-G10;Expression=AK119994;TENOR=Os07t0612400-01;KEGG=Os07t0612400-01
Chr07	irgsp1_rep	five_prime_UTR	25216589	25216620	.	-	.	Parent=Os07t0612400-01
Chr07	irgsp1_rep	CDS	25215944	25216588	.	-	0	Parent=Os07t0612400-01
Chr07	irgsp1_rep	CDS	25215095	25215190	.	-	0	Parent=Os07t0612400-01
Chr07	irgsp1_rep	CDS	25214931	25214998	.	-	0	Parent=Os07t0612400-01
Chr07	irgsp1_rep	CDS	25214648	25214777	.	-	1	Parent=Os07t0612400-01
Chr07	irgsp1_rep	three_prime_UTR	25214544	25214647	.	-	.	Parent=Os07t0612400-01
Chr07	irgsp1_rep	mRNA	25219509	25223053	.	-	.	ID=Os07t0612500-00;Name=Os07t0612500-00;Locus_id=Os07g0612500;Note=Transcription factor TAFII-31 domain containing protein.;Transcript_evidence=EU959481 (DDBJ);ORF_evidence=NP_001060252.2 (RefSeq);GO=Biological Process: transcription initiation%2C DNA-dependent (GO:0006352),Molecular Function: DNA binding (GO:0003677);InterPro=Transcription factor TAFII-31 (IPR003162),Histone-fold (IPR009072);TENOR=Os07t0612500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	25222739	25223053	.	-	0	Parent=Os07t0612500-00
Chr07	irgsp1_rep	CDS	25219509	25220471	.	-	0	Parent=Os07t0612500-00
Chr07	irgsp1_rep	mRNA	25225862	25226756	.	-	.	ID=Os07t0613000-01;Name=Os07t0613000-01;Locus_id=Os07g0613000;Note=RelA/SpoT protein domain containing protein.;Transcript_evidence=AK242420 (DDBJ%2C Best hit);ORF_evidence=NP_001060253.2 (RefSeq);GO=Biological Process: guanosine tetraphosphate metabolic process (GO:0015969);InterPro=RelA/SpoT protein (IPR004811),Beta-grasp fold%2C ferredoxin-type (IPR012675);NIAS_FLcDNA=J080083F11;TENOR=Os07t0613000-01;KEGG=Os07t0613000-01
Chr07	irgsp1_rep	five_prime_UTR	25226755	25226756	.	-	.	Parent=Os07t0613000-01
Chr07	irgsp1_rep	CDS	25226581	25226754	.	-	0	Parent=Os07t0613000-01
Chr07	irgsp1_rep	CDS	25226231	25226473	.	-	0	Parent=Os07t0613000-01
Chr07	irgsp1_rep	three_prime_UTR	25225862	25226230	.	-	.	Parent=Os07t0613000-01
Chr07	irgsp1_rep	mRNA	25236713	25237453	.	-	.	ID=Os07t0613200-00;Name=Os07t0613200-00;Locus_id=Os07g0613200;Oryzabase Gene Name Synonym(s)=Ribosomal protein L27a.e;Note=Similar to 60S ribosomal protein L27a-3.;Transcript_evidence=FP101099 (DDBJ);ORF_evidence=B6SK14 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L15%2C conserved site (IPR001196),Ribosomal protein L18e/L15P (IPR021131);Oryzabase=17672;TENOR=Os07t0613200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	25237396	25237453	.	-	.	Parent=Os07t0613200-00
Chr07	irgsp1_rep	CDS	25236955	25237395	.	-	0	Parent=Os07t0613200-00
Chr07	irgsp1_rep	three_prime_UTR	25236713	25236954	.	-	.	Parent=Os07t0613200-00
Chr07	irgsp1_rep	mRNA	25239766	25247922	.	+	.	ID=Os07t0613300-01;Name=Os07t0613300-01;Locus_id=Os07g0613300;Note=Similar to PAUSED.;Transcript_evidence=AK099895 (DDBJ%2C Best hit);ORF_evidence=Q7XAC4 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Exportin-1/Importin-beta-like (IPR013598),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013113L09;Expression=AK099895;TENOR=Os07t0613300-01;KEGG=Os07t0613300-01
Chr07	irgsp1_rep	five_prime_UTR	25239766	25239912	.	+	.	Parent=Os07t0613300-01
Chr07	irgsp1_rep	CDS	25239913	25241607	.	+	0	Parent=Os07t0613300-01
Chr07	irgsp1_rep	CDS	25241693	25241788	.	+	0	Parent=Os07t0613300-01
Chr07	irgsp1_rep	CDS	25241872	25241961	.	+	0	Parent=Os07t0613300-01
Chr07	irgsp1_rep	CDS	25242053	25242157	.	+	0	Parent=Os07t0613300-01
Chr07	irgsp1_rep	CDS	25242344	25242403	.	+	0	Parent=Os07t0613300-01
Chr07	irgsp1_rep	CDS	25242511	25242573	.	+	0	Parent=Os07t0613300-01
Chr07	irgsp1_rep	CDS	25242657	25242752	.	+	0	Parent=Os07t0613300-01
Chr07	irgsp1_rep	CDS	25243562	25243726	.	+	0	Parent=Os07t0613300-01
Chr07	irgsp1_rep	CDS	25244684	25244857	.	+	0	Parent=Os07t0613300-01
Chr07	irgsp1_rep	CDS	25244967	25245032	.	+	0	Parent=Os07t0613300-01
Chr07	irgsp1_rep	CDS	25245136	25245234	.	+	0	Parent=Os07t0613300-01
Chr07	irgsp1_rep	CDS	25246294	25246437	.	+	0	Parent=Os07t0613300-01
Chr07	irgsp1_rep	CDS	25246892	25246981	.	+	0	Parent=Os07t0613300-01
Chr07	irgsp1_rep	three_prime_UTR	25246982	25247047	.	+	.	Parent=Os07t0613300-01
Chr07	irgsp1_rep	three_prime_UTR	25247155	25247206	.	+	.	Parent=Os07t0613300-01
Chr07	irgsp1_rep	three_prime_UTR	25247550	25247922	.	+	.	Parent=Os07t0613300-01
Chr07	irgsp1_rep	mRNA	25239858	25247922	.	+	.	ID=Os07t0613300-02;Name=Os07t0613300-02;Locus_id=Os07g0613300;Note=Similar to PAUSED.;Transcript_evidence=AK067398 (DDBJ%2C Best hit),AK106898 (DDBJ%2C Best hit);ORF_evidence=A2YNM7 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Exportin-1/Importin-beta-like (IPR013598),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013106D10,002-118-H04;Expression=AK067398;TENOR=Os07t0613300-02;KEGG=Os07t0613300-02
Chr07	irgsp1_rep	five_prime_UTR	25239858	25239912	.	+	.	Parent=Os07t0613300-02
Chr07	irgsp1_rep	CDS	25239913	25241607	.	+	0	Parent=Os07t0613300-02
Chr07	irgsp1_rep	CDS	25241693	25241788	.	+	0	Parent=Os07t0613300-02
Chr07	irgsp1_rep	CDS	25241872	25241961	.	+	0	Parent=Os07t0613300-02
Chr07	irgsp1_rep	CDS	25242053	25242157	.	+	0	Parent=Os07t0613300-02
Chr07	irgsp1_rep	CDS	25242344	25242403	.	+	0	Parent=Os07t0613300-02
Chr07	irgsp1_rep	CDS	25242511	25242573	.	+	0	Parent=Os07t0613300-02
Chr07	irgsp1_rep	CDS	25242657	25242752	.	+	0	Parent=Os07t0613300-02
Chr07	irgsp1_rep	CDS	25243562	25243726	.	+	0	Parent=Os07t0613300-02
Chr07	irgsp1_rep	CDS	25244684	25244857	.	+	0	Parent=Os07t0613300-02
Chr07	irgsp1_rep	CDS	25244967	25245032	.	+	0	Parent=Os07t0613300-02
Chr07	irgsp1_rep	CDS	25245136	25245234	.	+	0	Parent=Os07t0613300-02
Chr07	irgsp1_rep	CDS	25246294	25246437	.	+	0	Parent=Os07t0613300-02
Chr07	irgsp1_rep	CDS	25246892	25246981	.	+	0	Parent=Os07t0613300-02
Chr07	irgsp1_rep	three_prime_UTR	25246982	25247047	.	+	.	Parent=Os07t0613300-02
Chr07	irgsp1_rep	three_prime_UTR	25247155	25247206	.	+	.	Parent=Os07t0613300-02
Chr07	irgsp1_rep	three_prime_UTR	25247550	25247922	.	+	.	Parent=Os07t0613300-02
Chr07	irgsp1_rep	mRNA	25242655	25247925	.	+	.	ID=Os07t0613300-03;Name=Os07t0613300-03;Locus_id=Os07g0613300;Note=Similar to predicted protein.;Transcript_evidence=AK059512 (DDBJ%2C Best hit);ORF_evidence=NP_001077813.1 (RefSeq);NIAS_FLcDNA=001-029-B06;Expression=AK059512;TENOR=Os07t0613300-03;KEGG=Os07t0613300-03
Chr07	irgsp1_rep	five_prime_UTR	25242655	25242656	.	+	.	Parent=Os07t0613300-03
Chr07	irgsp1_rep	CDS	25242657	25242752	.	+	0	Parent=Os07t0613300-03
Chr07	irgsp1_rep	CDS	25243562	25243726	.	+	0	Parent=Os07t0613300-03
Chr07	irgsp1_rep	CDS	25244684	25244857	.	+	0	Parent=Os07t0613300-03
Chr07	irgsp1_rep	CDS	25244967	25245032	.	+	0	Parent=Os07t0613300-03
Chr07	irgsp1_rep	CDS	25245136	25245234	.	+	0	Parent=Os07t0613300-03
Chr07	irgsp1_rep	CDS	25246294	25246437	.	+	0	Parent=Os07t0613300-03
Chr07	irgsp1_rep	CDS	25246892	25246981	.	+	0	Parent=Os07t0613300-03
Chr07	irgsp1_rep	three_prime_UTR	25246982	25247047	.	+	.	Parent=Os07t0613300-03
Chr07	irgsp1_rep	three_prime_UTR	25247155	25247206	.	+	.	Parent=Os07t0613300-03
Chr07	irgsp1_rep	three_prime_UTR	25247550	25247925	.	+	.	Parent=Os07t0613300-03
Chr07	irgsp1_rep	mRNA	25255066	25259961	.	+	.	ID=Os07t0613500-01;Name=Os07t0613500-01;Locus_id=Os07g0613500;CGSNL Gene Symbol=PTK10;CGSNL Gene Name=PROTEIN TYROSINE KINASE 10;Oryzabase Gene Symbol Synonym(s)=OsPTK10;Oryzabase Gene Name Synonym(s)=Protein Tyrosine Kinase 10;Note=Similar to Protein kinase APK1B%2C chloroplast precursor (EC 2.7.1.-).;Transcript_evidence=AK071281 (DDBJ%2C Best hit);ORF_evidence=C6ZRQ0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J023086E05;Oryzabase=23721;Expression=AK071281;TENOR=Os07t0613500-01;KEGG=Os07t0613500-01
Chr07	irgsp1_rep	five_prime_UTR	25255066	25255208	.	+	.	Parent=Os07t0613500-01
Chr07	irgsp1_rep	CDS	25255209	25255664	.	+	0	Parent=Os07t0613500-01
Chr07	irgsp1_rep	CDS	25256844	25256979	.	+	0	Parent=Os07t0613500-01
Chr07	irgsp1_rep	CDS	25258144	25258280	.	+	2	Parent=Os07t0613500-01
Chr07	irgsp1_rep	CDS	25259019	25259705	.	+	0	Parent=Os07t0613500-01
Chr07	irgsp1_rep	three_prime_UTR	25259706	25259961	.	+	.	Parent=Os07t0613500-01
Chr07	irgsp1_rep	mRNA	25260329	25260955	.	+	.	ID=Os07t0613600-01;Name=Os07t0613600-01;Locus_id=Os07g0613600;Note=Hypothetical conserved gene.;Transcript_evidence=AK107990 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=002-135-F07;Expression=AK107990;TENOR=Os07t0613600-01;KEGG=Os07t0613600-01
Chr07	irgsp1_rep	five_prime_UTR	25260329	25260353	.	+	.	Parent=Os07t0613600-01
Chr07	irgsp1_rep	CDS	25260354	25260578	.	+	0	Parent=Os07t0613600-01
Chr07	irgsp1_rep	three_prime_UTR	25260579	25260955	.	+	.	Parent=Os07t0613600-01
Chr07	irgsp1_rep	mRNA	25273385	25273944	.	-	.	ID=Os07t0613800-00;Name=Os07t0613800-00;Locus_id=Os07g0613800;Note=Protein of unknown function DUF1677%2C plant domain containing protein.;Transcript_evidence=AK333387 (DDBJ);ORF_evidence=GeneMark;InterPro=Protein of unknown function DUF1677%2C plant (IPR012876);TENOR=Os07t0613800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	25273385	25273944	.	-	0	Parent=Os07t0613800-00
Chr07	irgsp1_rep	mRNA	25273731	25274197	.	+	.	ID=Os07t0613833-00;Name=Os07t0613833-00;Locus_id=Os07g0613833;Note=Hypothetical gene.;Transcript_evidence=EU945655 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0613833-00;KEGG=Os07t0613833-00
Chr07	irgsp1_rep	five_prime_UTR	25273731	25273780	.	+	.	Parent=Os07t0613833-00
Chr07	irgsp1_rep	CDS	25273781	25274032	.	+	0	Parent=Os07t0613833-00
Chr07	irgsp1_rep	three_prime_UTR	25274033	25274197	.	+	.	Parent=Os07t0613833-00
Chr07	irgsp1_rep	mRNA	25275316	25284591	.	+	.	ID=Os07t0613866-00;Name=Os07t0613866-00;Locus_id=Os07g0613866;Note=Conserved hypothetical protein.;Transcript_evidence=EU951682 (DDBJ);ORF_evidence=XP_002327722.1 (RefSeq);TENOR=Os07t0613866-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	25275316	25275430	.	+	.	Parent=Os07t0613866-00
Chr07	irgsp1_rep	five_prime_UTR	25284409	25284444	.	+	.	Parent=Os07t0613866-00
Chr07	irgsp1_rep	CDS	25284445	25284567	.	+	0	Parent=Os07t0613866-00
Chr07	irgsp1_rep	three_prime_UTR	25284568	25284591	.	+	.	Parent=Os07t0613866-00
Chr07	irgsp1_rep	mRNA	25287541	25290032	.	+	.	ID=Os07t0614000-01;Name=Os07t0614000-01;Locus_id=Os07g0614000;Oryzabase Gene Symbol Synonym(s)=OsSTRL12%2C STRL12;Oryzabase Gene Name Synonym(s)=STR-like 12;Note=Six-bladed beta-propeller%2C TolB-like domain containing protein.;Transcript_evidence=AK069163 (DDBJ%2C Best hit);ORF_evidence=A2YNN2 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: strictosidine synthase activity (GO:0016844);InterPro=Six-bladed beta-propeller%2C TolB-like (IPR011042),Strictosidine synthase%2C conserved region (IPR018119);NIAS_FLcDNA=J023006C12;Oryzabase=21795;Expression=AK069163;TENOR=Os07t0614000-01;KEGG=Os07t0614000-01
Chr07	irgsp1_rep	five_prime_UTR	25287541	25287651	.	+	.	Parent=Os07t0614000-01
Chr07	irgsp1_rep	CDS	25287652	25287795	.	+	0	Parent=Os07t0614000-01
Chr07	irgsp1_rep	CDS	25287879	25288094	.	+	0	Parent=Os07t0614000-01
Chr07	irgsp1_rep	CDS	25288446	25288516	.	+	0	Parent=Os07t0614000-01
Chr07	irgsp1_rep	CDS	25288632	25288868	.	+	1	Parent=Os07t0614000-01
Chr07	irgsp1_rep	CDS	25289293	25289425	.	+	1	Parent=Os07t0614000-01
Chr07	irgsp1_rep	CDS	25289515	25289817	.	+	0	Parent=Os07t0614000-01
Chr07	irgsp1_rep	three_prime_UTR	25289818	25290032	.	+	.	Parent=Os07t0614000-01
Chr07	irgsp1_rep	mRNA	25287602	25290131	.	+	.	ID=Os07t0614000-02;Name=Os07t0614000-02;Locus_id=Os07g0614000;Oryzabase Gene Symbol Synonym(s)=OsSTRL12%2C STRL12;Oryzabase Gene Name Synonym(s)=STR-like 12;Note=Six-bladed beta-propeller%2C TolB-like domain containing protein.;Transcript_evidence=AK109489 (DDBJ%2C Best hit);ORF_evidence=A2YNN2 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: strictosidine synthase activity (GO:0016844);InterPro=Six-bladed beta-propeller%2C TolB-like (IPR011042),Strictosidine synthase%2C conserved region (IPR018119);NIAS_FLcDNA=001-204-A10;Oryzabase=21795;Expression=AK109489;TENOR=Os07t0614000-02;KEGG=Os07t0614000-02
Chr07	irgsp1_rep	five_prime_UTR	25287602	25287651	.	+	.	Parent=Os07t0614000-02
Chr07	irgsp1_rep	CDS	25287652	25287795	.	+	0	Parent=Os07t0614000-02
Chr07	irgsp1_rep	CDS	25287879	25288094	.	+	0	Parent=Os07t0614000-02
Chr07	irgsp1_rep	CDS	25288446	25288516	.	+	0	Parent=Os07t0614000-02
Chr07	irgsp1_rep	CDS	25288632	25288868	.	+	1	Parent=Os07t0614000-02
Chr07	irgsp1_rep	CDS	25289293	25289425	.	+	1	Parent=Os07t0614000-02
Chr07	irgsp1_rep	CDS	25289515	25289817	.	+	0	Parent=Os07t0614000-02
Chr07	irgsp1_rep	three_prime_UTR	25289818	25290131	.	+	.	Parent=Os07t0614000-02
Chr07	irgsp1_rep	mRNA	25289257	25293741	.	-	.	ID=Os07t0614100-01;Name=Os07t0614100-01;Locus_id=Os07g0614100;Oryzabase Gene Symbol Synonym(s)=OsPAA2%2C PAA2;Oryzabase Gene Name Synonym(s)=20S proteasome alpha2 subunit;Note=Alpha 1-2 subunit of 20S proteasome.;Transcript_evidence=AK102448 (DDBJ%2C Best hit),AK058885 (DDBJ%2C Best hit),AK069145 (DDBJ%2C Best hit);ORF_evidence=B9FU77 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603),Cellular Component: proteasome core complex (GO:0005839),Cellular Component: proteasome core complex%2C alpha-subunit complex (GO:0019773),Molecular Function: endopeptidase activity (GO:0004175),Molecular Function: threonine-type endopeptidase activity (GO:0004298);InterPro=Proteasome%2C alpha-subunit%2C conserved site (IPR000426),Proteasome%2C subunit alpha/beta (IPR001353),Proteasome A-type subunit (IPR023332);NIAS_FLcDNA=J033093O06,001-007-C05,J023007E07;Oryzabase=20181;Expression=AK102448;TENOR=Os07t0614100-01;KEGG=Os07t0614100-01 (EC:3.4.25.1)
Chr07	irgsp1_rep	five_prime_UTR	25293677	25293741	.	-	.	Parent=Os07t0614100-01
Chr07	irgsp1_rep	CDS	25293559	25293676	.	-	0	Parent=Os07t0614100-01
Chr07	irgsp1_rep	CDS	25293332	25293423	.	-	2	Parent=Os07t0614100-01
Chr07	irgsp1_rep	CDS	25293162	25293243	.	-	0	Parent=Os07t0614100-01
Chr07	irgsp1_rep	CDS	25292096	25292192	.	-	2	Parent=Os07t0614100-01
Chr07	irgsp1_rep	CDS	25291605	25291663	.	-	1	Parent=Os07t0614100-01
Chr07	irgsp1_rep	CDS	25291413	25291498	.	-	2	Parent=Os07t0614100-01
Chr07	irgsp1_rep	CDS	25291075	25291170	.	-	0	Parent=Os07t0614100-01
Chr07	irgsp1_rep	CDS	25290376	25290435	.	-	0	Parent=Os07t0614100-01
Chr07	irgsp1_rep	CDS	25290039	25290110	.	-	0	Parent=Os07t0614100-01
Chr07	irgsp1_rep	three_prime_UTR	25289257	25290038	.	-	.	Parent=Os07t0614100-01
Chr07	irgsp1_rep	mRNA	25298420	25305354	.	-	.	ID=Os07t0614250-00;Name=Os07t0614250-00;Locus_id=Os07g0614250;Note=Hypothetical protein.;Transcript_evidence=tplb0058a20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0614250-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	25305353	25305354	.	-	.	Parent=Os07t0614250-00
Chr07	irgsp1_rep	CDS	25305051	25305352	.	-	0	Parent=Os07t0614250-00
Chr07	irgsp1_rep	CDS	25304873	25304921	.	-	1	Parent=Os07t0614250-00
Chr07	irgsp1_rep	three_prime_UTR	25304816	25304872	.	-	.	Parent=Os07t0614250-00
Chr07	irgsp1_rep	three_prime_UTR	25303729	25303787	.	-	.	Parent=Os07t0614250-00
Chr07	irgsp1_rep	three_prime_UTR	25303436	25303594	.	-	.	Parent=Os07t0614250-00
Chr07	irgsp1_rep	three_prime_UTR	25302932	25303057	.	-	.	Parent=Os07t0614250-00
Chr07	irgsp1_rep	three_prime_UTR	25302320	25302394	.	-	.	Parent=Os07t0614250-00
Chr07	irgsp1_rep	three_prime_UTR	25301813	25301983	.	-	.	Parent=Os07t0614250-00
Chr07	irgsp1_rep	three_prime_UTR	25301445	25301719	.	-	.	Parent=Os07t0614250-00
Chr07	irgsp1_rep	three_prime_UTR	25300906	25300984	.	-	.	Parent=Os07t0614250-00
Chr07	irgsp1_rep	three_prime_UTR	25300557	25300668	.	-	.	Parent=Os07t0614250-00
Chr07	irgsp1_rep	three_prime_UTR	25300213	25300455	.	-	.	Parent=Os07t0614250-00
Chr07	irgsp1_rep	three_prime_UTR	25299994	25300111	.	-	.	Parent=Os07t0614250-00
Chr07	irgsp1_rep	three_prime_UTR	25298420	25298857	.	-	.	Parent=Os07t0614250-00
Chr07	irgsp1_rep	mRNA	25301682	25305675	.	+	.	ID=Os07t0614300-01;Name=Os07t0614300-01;Locus_id=Os07g0614300;Note=Similar to Von Willebrand factor type A domain containing protein%2C expressed.;Transcript_evidence=AK111336 (DDBJ%2C Best hit);ORF_evidence=Q10JU9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=von Willebrand factor%2C type A (IPR002035);NIAS_FLcDNA=002-181-F03;Expression=AK111336;TENOR=Os07t0614300-01;KEGG=Os07t0614300-01
Chr07	irgsp1_rep	five_prime_UTR	25301682	25301682	.	+	.	Parent=Os07t0614300-01
Chr07	irgsp1_rep	CDS	25301683	25301730	.	+	0	Parent=Os07t0614300-01
Chr07	irgsp1_rep	CDS	25301831	25301987	.	+	0	Parent=Os07t0614300-01
Chr07	irgsp1_rep	CDS	25302322	25302399	.	+	2	Parent=Os07t0614300-01
Chr07	irgsp1_rep	CDS	25302937	25303037	.	+	2	Parent=Os07t0614300-01
Chr07	irgsp1_rep	CDS	25303412	25303582	.	+	0	Parent=Os07t0614300-01
Chr07	irgsp1_rep	CDS	25303716	25303790	.	+	0	Parent=Os07t0614300-01
Chr07	irgsp1_rep	CDS	25304819	25304911	.	+	0	Parent=Os07t0614300-01
Chr07	irgsp1_rep	CDS	25305038	25305373	.	+	0	Parent=Os07t0614300-01
Chr07	irgsp1_rep	three_prime_UTR	25305374	25305675	.	+	.	Parent=Os07t0614300-01
Chr07	irgsp1_rep	mRNA	25309034	25311637	.	+	.	ID=Os07t0614400-01;Name=Os07t0614400-01;Locus_id=Os07g0614400;RAP-DB Gene Symbol Synonym(s)=qSOR1%2C DRL1;RAP-DB Gene Name Synonym(s)=quantitative trait locus for SOIL SURFACE ROOTING 1%2C DRO1-like 1;Note=Homolog of DRO1 (DEEPER ROOTING 1)%2C Control of root system architecture%2C Root gravitropic response;Transcript_evidence=AK103733;ORF_evidence=Q7XHP3;NIAS_FLcDNA=J033138F17;Manual Curation=August 25%2C 2020;Literature_PMID=32817523;Expression=AK103733;TENOR=Os07t0614400-01;KEGG=Os07t0614400-01;Subcellular location=plasma membrane (GO:0005886)
Chr07	irgsp1_rep	five_prime_UTR	25309034	25309354	.	+	.	Parent=Os07t0614400-01
Chr07	irgsp1_rep	CDS	25309355	25309360	.	+	0	Parent=Os07t0614400-01
Chr07	irgsp1_rep	CDS	25309460	25309547	.	+	0	Parent=Os07t0614400-01
Chr07	irgsp1_rep	CDS	25309722	25310308	.	+	2	Parent=Os07t0614400-01
Chr07	irgsp1_rep	CDS	25310752	25310938	.	+	0	Parent=Os07t0614400-01
Chr07	irgsp1_rep	CDS	25311111	25311130	.	+	2	Parent=Os07t0614400-01
Chr07	irgsp1_rep	three_prime_UTR	25311131	25311174	.	+	.	Parent=Os07t0614400-01
Chr07	irgsp1_rep	three_prime_UTR	25311263	25311637	.	+	.	Parent=Os07t0614400-01
Chr07	irgsp1_rep	mRNA	25313897	25316660	.	-	.	ID=Os07t0614500-01;Name=Os07t0614500-01;Locus_id=Os07g0614500;CGSNL Gene Symbol=EEF1B;CGSNL Gene Name=EUKARYOTIC ELONGATION FACTOR 1-BETA;Oryzabase Gene Symbol Synonym(s)=eEF-1beta%2C EF-1beta;Oryzabase Gene Name Synonym(s)=elongation factor 1 beta%2C elongation factor 1-beta;Note=Similar to Elongation factor 1 beta 2.;Transcript_evidence=AK061069 (DDBJ%2C Best hit),AK071736 (DDBJ%2C Best hit);ORF_evidence=NP_001149263.1 (RefSeq);GO=Biological Process: translational elongation (GO:0006414),Cellular Component: eukaryotic translation elongation factor 1 complex (GO:0005853),Molecular Function: translation elongation factor activity (GO:0003746);InterPro=Translation elongation factor EF1B%2C beta/delta chains%2C conserved site (IPR001326),Translation elongation factor EF1B%2C beta/delta subunit%2C guanine nucleotide exchange (IPR014038),Translation elongation factor EF1B/ribosomal protein S6 (IPR014717);NIAS_FLcDNA=006-206-C03,J023109L04;Oryzabase=14463;Expression=AK061069;TENOR=Os07t0614500-01;KEGG=Os07t0614500-01
Chr07	irgsp1_rep	five_prime_UTR	25316585	25316660	.	-	.	Parent=Os07t0614500-01
Chr07	irgsp1_rep	five_prime_UTR	25315788	25315818	.	-	.	Parent=Os07t0614500-01
Chr07	irgsp1_rep	CDS	25315702	25315787	.	-	0	Parent=Os07t0614500-01
Chr07	irgsp1_rep	CDS	25315497	25315613	.	-	1	Parent=Os07t0614500-01
Chr07	irgsp1_rep	CDS	25315335	25315419	.	-	1	Parent=Os07t0614500-01
Chr07	irgsp1_rep	CDS	25315053	25315176	.	-	0	Parent=Os07t0614500-01
Chr07	irgsp1_rep	CDS	25314779	25314892	.	-	2	Parent=Os07t0614500-01
Chr07	irgsp1_rep	CDS	25314520	25314681	.	-	2	Parent=Os07t0614500-01
Chr07	irgsp1_rep	CDS	25314125	25314126	.	-	2	Parent=Os07t0614500-01
Chr07	irgsp1_rep	three_prime_UTR	25313897	25314124	.	-	.	Parent=Os07t0614500-01
Chr07	irgsp1_rep	mRNA	25313903	25315178	.	-	.	ID=Os07t0614500-03;Name=Os07t0614500-03;Locus_id=Os07g0614500;CGSNL Gene Symbol=EEF1B;CGSNL Gene Name=EUKARYOTIC ELONGATION FACTOR 1-BETA;Oryzabase Gene Symbol Synonym(s)=eEF-1beta%2C EF-1beta;Oryzabase Gene Name Synonym(s)=elongation factor 1 beta%2C elongation factor 1-beta;Note=Similar to elongation factor 1-delta 1.;Transcript_evidence=AK059384 (DDBJ%2C Best hit);ORF_evidence=NP_001149263.1 (RefSeq);GO=Biological Process: translational elongation (GO:0006414),Cellular Component: eukaryotic translation elongation factor 1 complex (GO:0005853),Molecular Function: translation elongation factor activity (GO:0003746);InterPro=Translation elongation factor EF1B%2C beta/delta chains%2C conserved site (IPR001326),Translation elongation factor EF1B%2C beta/delta subunit%2C guanine nucleotide exchange (IPR014038),Translation elongation factor EF1B/ribosomal protein S6 (IPR014717);NIAS_FLcDNA=001-026-G07;Oryzabase=14463;Expression=AK059384;TENOR=Os07t0614500-03;KEGG=Os07t0614500-03
Chr07	irgsp1_rep	five_prime_UTR	25315177	25315178	.	-	.	Parent=Os07t0614500-03
Chr07	irgsp1_rep	CDS	25315053	25315176	.	-	0	Parent=Os07t0614500-03
Chr07	irgsp1_rep	CDS	25314779	25314892	.	-	2	Parent=Os07t0614500-03
Chr07	irgsp1_rep	CDS	25314520	25314681	.	-	2	Parent=Os07t0614500-03
Chr07	irgsp1_rep	CDS	25314125	25314126	.	-	2	Parent=Os07t0614500-03
Chr07	irgsp1_rep	three_prime_UTR	25313903	25314124	.	-	.	Parent=Os07t0614500-03
Chr07	irgsp1_rep	mRNA	25320455	25323447	.	+	.	ID=Os07t0614600-01;Name=Os07t0614600-01;Locus_id=Os07g0614600;Note=Transmembrane receptor%2C eukaryota domain containing protein.;Transcript_evidence=AK242993 (DDBJ%2C Best hit);ORF_evidence=Q8H399 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Transmembrane receptor%2C eukaryota (IPR009637);NIAS_FLcDNA=J090095G09;TENOR=Os07t0614600-01;KEGG=Os07t0614600-01
Chr07	irgsp1_rep	five_prime_UTR	25320455	25320546	.	+	.	Parent=Os07t0614600-01
Chr07	irgsp1_rep	CDS	25320547	25320749	.	+	0	Parent=Os07t0614600-01
Chr07	irgsp1_rep	CDS	25320855	25321815	.	+	1	Parent=Os07t0614600-01
Chr07	irgsp1_rep	CDS	25321915	25322010	.	+	0	Parent=Os07t0614600-01
Chr07	irgsp1_rep	CDS	25322734	25322870	.	+	0	Parent=Os07t0614600-01
Chr07	irgsp1_rep	CDS	25322974	25323181	.	+	1	Parent=Os07t0614600-01
Chr07	irgsp1_rep	three_prime_UTR	25323182	25323447	.	+	.	Parent=Os07t0614600-01
Chr07	irgsp1_rep	mRNA	25324037	25324340	.	-	.	ID=Os07t0614650-00;Name=Os07t0614650-00;Locus_id=Os07g0614650;Note=Similar to predicted protein.;Transcript_evidence=EU949494 (DDBJ);ORF_evidence=XP_002327722.1 (RefSeq);TENOR=Os07t0614650-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	25324176	25324340	.	-	0	Parent=Os07t0614650-00
Chr07	irgsp1_rep	three_prime_UTR	25324037	25324175	.	-	.	Parent=Os07t0614650-00
Chr07	irgsp1_rep	mRNA	25326762	25327995	.	-	.	ID=Os07t0614700-01;Name=Os07t0614700-01;Locus_id=Os07g0614700;CGSNL Gene Symbol=SPX6;CGSNL Gene Name=SPX DOMAIN PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsSPX6;Oryzabase Gene Name Synonym(s)=SPX (SYG/PHO81/XPR1) domain gene 6%2C SPX domain protein 6;Note=SPX%2C N-terminal domain containing protein.;Transcript_evidence=AK243609 (DDBJ%2C Best hit);ORF_evidence=Q8H398 (UniProt);InterPro=SPX%2C N-terminal (IPR004331);NIAS_FLcDNA=J100085G11;Oryzabase=11157;TENOR=Os07t0614700-01;KEGG=Os07t0614700-01
Chr07	irgsp1_rep	five_prime_UTR	25327792	25327995	.	-	.	Parent=Os07t0614700-01
Chr07	irgsp1_rep	CDS	25327387	25327791	.	-	0	Parent=Os07t0614700-01
Chr07	irgsp1_rep	three_prime_UTR	25326762	25327386	.	-	.	Parent=Os07t0614700-01
Chr07	irgsp1_rep	mRNA	25326762	25327907	.	-	.	ID=Os07t0614700-02;Name=Os07t0614700-02;Locus_id=Os07g0614700;RAP-DB Gene Symbol Synonym(s)=OsSPX6%2C SPX6;CGSNL Gene Symbol=SPX6;CGSNL Gene Name=SPX DOMAIN PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsSPX6;Oryzabase Gene Name Synonym(s)=SPX (SYG/PHO81/XPR1) domain gene 6%2C SPX domain protein 6;Note=SPX domain (SYG1%2C Pho81 and XPR1)-containing protein%2C Negative regulation of phosphate starvation signaling;Transcript_evidence=KF267998;ORF_evidence=Q8H398;InterPro=SPX domain (IPR004331);Manual Curation=April 19%2C 2018;Literature_PMID=29658119,24368504;Oryzabase=11157;Subcellular location=cytoplasm (GO:0005737), nucleus (GO:0005634)
Chr07	irgsp1_rep	five_prime_UTR	25327792	25327907	.	-	.	Parent=Os07t0614700-02
Chr07	irgsp1_rep	CDS	25327576	25327791	.	-	0	Parent=Os07t0614700-02
Chr07	irgsp1_rep	CDS	25327001	25327489	.	-	0	Parent=Os07t0614700-02
Chr07	irgsp1_rep	three_prime_UTR	25326762	25327000	.	-	.	Parent=Os07t0614700-02
Chr07	irgsp1_rep	mRNA	25326979	25327792	.	+	.	ID=Os07t0614850-00;Name=Os07t0614850-00;Locus_id=Os07g0614850;Note=Hypothetical gene.;Transcript_evidence=EU963876 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0614850-00
Chr07	irgsp1_rep	five_prime_UTR	25326979	25327007	.	+	.	Parent=Os07t0614850-00
Chr07	irgsp1_rep	CDS	25327008	25327370	.	+	0	Parent=Os07t0614850-00
Chr07	irgsp1_rep	three_prime_UTR	25327371	25327488	.	+	.	Parent=Os07t0614850-00
Chr07	irgsp1_rep	three_prime_UTR	25327575	25327792	.	+	.	Parent=Os07t0614850-00
Chr07	irgsp1_rep	mRNA	25335229	25338981	.	+	.	ID=Os07t0615000-01;Name=Os07t0615000-01;Locus_id=Os07g0615000;Oryzabase Gene Name Synonym(s)=mesocotyl length candidate gene%2C pentatricopeptide repeat-containing protein;Note=Similar to PPR repeat domain containing protein.;Transcript_evidence=AK064415 (DDBJ%2C Best hit);ORF_evidence=D8LAK9 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=002-110-A11;Oryzabase=20302;TENOR=Os07t0615000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	25335229	25336044	.	+	0	Parent=Os07t0615000-01
Chr07	irgsp1_rep	three_prime_UTR	25336045	25336314	.	+	.	Parent=Os07t0615000-01
Chr07	irgsp1_rep	three_prime_UTR	25336758	25336894	.	+	.	Parent=Os07t0615000-01
Chr07	irgsp1_rep	three_prime_UTR	25336999	25337073	.	+	.	Parent=Os07t0615000-01
Chr07	irgsp1_rep	three_prime_UTR	25337616	25337705	.	+	.	Parent=Os07t0615000-01
Chr07	irgsp1_rep	three_prime_UTR	25337809	25337864	.	+	.	Parent=Os07t0615000-01
Chr07	irgsp1_rep	three_prime_UTR	25338652	25338981	.	+	.	Parent=Os07t0615000-01
Chr07	irgsp1_rep	mRNA	25339187	25342482	.	+	.	ID=Os07t0615100-01;Name=Os07t0615100-01;Locus_id=Os07g0615100;Note=Non-protein coding transcript.;Transcript_evidence=AK100874 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023126D22;TENOR=Os07t0615100-01
Chr07	irgsp1_rep	exon	25339187	25341509	.	+	.	Parent=Os07t0615100-01
Chr07	irgsp1_rep	exon	25342092	25342482	.	+	.	Parent=Os07t0615100-01
Chr07	irgsp1_rep	mRNA	25348060	25350242	.	+	.	ID=Os07t0615200-01;Name=Os07t0615200-01;Locus_id=Os07g0615200;CGSNL Gene Symbol=TIFY10B;CGSNL Gene Name=TIFY GENE 10B;Oryzabase Gene Symbol Synonym(s)=OsJAZ6%2C OsJAZ 7%2C OsJAZ7%2C OsTIFY10B%2C JAZ6%2C JAZ7;Oryzabase Gene Name Synonym(s)=Jasmonate ZIM-domain protein 6%2C Jasmonate ZIM-domain protein 7.;Note=Tify domain containing protein.;Transcript_evidence=AK065604 (DDBJ%2C Best hit),AK068566 (DDBJ%2C Best hit);ORF_evidence=NP_001148852.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Tify (IPR010399),CO/COL/TOC1%2C conserved site (IPR018467);NIAS_FLcDNA=J013034F24,J013152B02;Oryzabase=9492;TENOR=Os07t0615200-01
Chr07	irgsp1_rep	five_prime_UTR	25348060	25348242	.	+	.	Parent=Os07t0615200-01
Chr07	irgsp1_rep	CDS	25348243	25348375	.	+	0	Parent=Os07t0615200-01
Chr07	irgsp1_rep	CDS	25348514	25348664	.	+	2	Parent=Os07t0615200-01
Chr07	irgsp1_rep	CDS	25349185	25349447	.	+	1	Parent=Os07t0615200-01
Chr07	irgsp1_rep	CDS	25349556	25349613	.	+	2	Parent=Os07t0615200-01
Chr07	irgsp1_rep	CDS	25349710	25349839	.	+	1	Parent=Os07t0615200-01
Chr07	irgsp1_rep	three_prime_UTR	25349840	25350242	.	+	.	Parent=Os07t0615200-01
Chr07	irgsp1_rep	mRNA	25357841	25362755	.	+	.	ID=Os07t0615400-01;Name=Os07t0615400-01;Locus_id=Os07g0615400;Note=Similar to Oligouridylate binding protein.;Transcript_evidence=AK119233 (DDBJ%2C Best hit),AK103536 (DDBJ%2C Best hit);ORF_evidence=Q2XPV3 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-114-E11,J033132B05;TENOR=Os07t0615400-01
Chr07	irgsp1_rep	five_prime_UTR	25357841	25357987	.	+	.	Parent=Os07t0615400-01
Chr07	irgsp1_rep	CDS	25357988	25358125	.	+	0	Parent=Os07t0615400-01
Chr07	irgsp1_rep	CDS	25359326	25359387	.	+	0	Parent=Os07t0615400-01
Chr07	irgsp1_rep	CDS	25359901	25360003	.	+	1	Parent=Os07t0615400-01
Chr07	irgsp1_rep	CDS	25360140	25360216	.	+	0	Parent=Os07t0615400-01
Chr07	irgsp1_rep	CDS	25360311	25360372	.	+	1	Parent=Os07t0615400-01
Chr07	irgsp1_rep	CDS	25360464	25360551	.	+	2	Parent=Os07t0615400-01
Chr07	irgsp1_rep	CDS	25360823	25360898	.	+	1	Parent=Os07t0615400-01
Chr07	irgsp1_rep	CDS	25360986	25361016	.	+	0	Parent=Os07t0615400-01
Chr07	irgsp1_rep	CDS	25361131	25361247	.	+	2	Parent=Os07t0615400-01
Chr07	irgsp1_rep	CDS	25361768	25361853	.	+	2	Parent=Os07t0615400-01
Chr07	irgsp1_rep	CDS	25361967	25362140	.	+	0	Parent=Os07t0615400-01
Chr07	irgsp1_rep	CDS	25362251	25362520	.	+	0	Parent=Os07t0615400-01
Chr07	irgsp1_rep	three_prime_UTR	25362521	25362755	.	+	.	Parent=Os07t0615400-01
Chr07	irgsp1_rep	mRNA	25359917	25362755	.	+	.	ID=Os07t0615400-02;Name=Os07t0615400-02;Locus_id=Os07g0615400;Note=Hypothetical conserved gene.;Transcript_evidence=AK059856 (DDBJ%2C Best hit);ORF_evidence=B8B8K2 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=006-207-A07;Expression=AK059856;TENOR=Os07t0615400-02;KEGG=Os07t0615400-02
Chr07	irgsp1_rep	CDS	25359917	25360003	.	+	0	Parent=Os07t0615400-02
Chr07	irgsp1_rep	CDS	25360140	25360216	.	+	0	Parent=Os07t0615400-02
Chr07	irgsp1_rep	CDS	25360311	25360372	.	+	1	Parent=Os07t0615400-02
Chr07	irgsp1_rep	CDS	25360464	25360551	.	+	2	Parent=Os07t0615400-02
Chr07	irgsp1_rep	CDS	25360823	25360907	.	+	1	Parent=Os07t0615400-02
Chr07	irgsp1_rep	three_prime_UTR	25360908	25361016	.	+	.	Parent=Os07t0615400-02
Chr07	irgsp1_rep	three_prime_UTR	25361131	25361247	.	+	.	Parent=Os07t0615400-02
Chr07	irgsp1_rep	three_prime_UTR	25361768	25361853	.	+	.	Parent=Os07t0615400-02
Chr07	irgsp1_rep	three_prime_UTR	25361967	25362140	.	+	.	Parent=Os07t0615400-02
Chr07	irgsp1_rep	three_prime_UTR	25362251	25362755	.	+	.	Parent=Os07t0615400-02
Chr07	irgsp1_rep	mRNA	25363573	25364560	.	-	.	ID=Os07t0615500-01;Name=Os07t0615500-01;Locus_id=Os07g0615500;Oryzabase Gene Symbol Synonym(s)=OsEnS-110;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 110;Note=Protein of unknown function DUF581 family protein.;Transcript_evidence=AK108210 (DDBJ%2C Best hit);ORF_evidence=A2YNP4 (UniProt);InterPro=Protein of unknown function DUF581 (IPR007650);NIAS_FLcDNA=002-140-D09;Oryzabase=18410;Expression=AK108210;TENOR=Os07t0615500-01;KEGG=Os07t0615500-01
Chr07	irgsp1_rep	five_prime_UTR	25364527	25364560	.	-	.	Parent=Os07t0615500-01
Chr07	irgsp1_rep	CDS	25364138	25364526	.	-	0	Parent=Os07t0615500-01
Chr07	irgsp1_rep	CDS	25363776	25363980	.	-	1	Parent=Os07t0615500-01
Chr07	irgsp1_rep	three_prime_UTR	25363573	25363775	.	-	.	Parent=Os07t0615500-01
Chr07	irgsp1_rep	mRNA	25369462	25371807	.	-	.	ID=Os07t0615800-00;Name=Os07t0615800-00;Locus_id=Os07g0615800;Note=DNA-directed RNA polymerase%2C M/15 kDa  subunit domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B6UEU6 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C TFIIS-type (IPR001222),DNA-directed RNA polymerase%2C M/15kDa subunit (IPR001529),DNA-directed RNA polymerase%2C subunit C11/M/9 (IPR012164);TENOR=Os07t0615800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	25371773	25371807	.	-	0	Parent=Os07t0615800-00
Chr07	irgsp1_rep	CDS	25371600	25371675	.	-	1	Parent=Os07t0615800-00
Chr07	irgsp1_rep	CDS	25369884	25370042	.	-	0	Parent=Os07t0615800-00
Chr07	irgsp1_rep	CDS	25369462	25369542	.	-	0	Parent=Os07t0615800-00
Chr07	irgsp1_rep	mRNA	25372046	25375591	.	+	.	ID=Os07t0615900-01;Name=Os07t0615900-01;Locus_id=Os07g0615900;RAP-DB Gene Symbol Synonym(s)=OsGATA23%2C OsGATA23a;RAP-DB Gene Name Synonym(s)=GATA transcription factor 23;CGSNL Gene Symbol=GATA23;CGSNL Gene Name=GATA TRANSCRIPTION FACTOR 23;Oryzabase Gene Symbol Synonym(s)=OsGATA23%2C OsGATA23a%2C OsGATA23b;Oryzabase Gene Name Synonym(s)=GATA transcription factor 23%2C GATA factor 23;Note=GATA transcription factor%2C Multi-stress responsive transcription factor%2C Response to salinity and drought;Transcript_evidence=AK073803;ORF_evidence=B7EMP8;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Zinc finger%2C NHR/GATA-type (IPR013088),Zinc finger%2C GATA-type (IPR000679),FAR1 DNA binding domain (IPR004330),MULE transposase domain (IPR018289),Zinc finger%2C SWIM-type (IPR007527),Zinc finger%2C PMZ-type (IPR006564);NIAS_FLcDNA=J033068D01;Manual Curation=April 23%2C 2019;Literature_PMID=29181013;Oryzabase=20502;Expression=AK073803;TENOR=Os07t0615900-01;KEGG=Os07t0615900-01
Chr07	irgsp1_rep	five_prime_UTR	25372046	25372233	.	+	.	Parent=Os07t0615900-01
Chr07	irgsp1_rep	CDS	25372234	25372424	.	+	0	Parent=Os07t0615900-01
Chr07	irgsp1_rep	CDS	25372666	25372768	.	+	1	Parent=Os07t0615900-01
Chr07	irgsp1_rep	CDS	25372974	25374736	.	+	0	Parent=Os07t0615900-01
Chr07	irgsp1_rep	CDS	25374913	25374968	.	+	1	Parent=Os07t0615900-01
Chr07	irgsp1_rep	CDS	25375291	25375406	.	+	2	Parent=Os07t0615900-01
Chr07	irgsp1_rep	three_prime_UTR	25375407	25375591	.	+	.	Parent=Os07t0615900-01
Chr07	irgsp1_rep	mRNA	25372078	25376126	.	+	.	ID=Os07t0615900-02;Name=Os07t0615900-02;Locus_id=Os07g0615900;RAP-DB Gene Symbol Synonym(s)=OsGATA23%2C OsGATA23b;RAP-DB Gene Name Synonym(s)=GATA transcription factor 23;CGSNL Gene Symbol=GATA23;CGSNL Gene Name=GATA TRANSCRIPTION FACTOR 23;Oryzabase Gene Symbol Synonym(s)=OsGATA23%2C OsGATA23a%2C OsGATA23b;Oryzabase Gene Name Synonym(s)=GATA transcription factor 23%2C GATA factor 23;Note=GATA transcription factor%2C Splice variant;Transcript_evidence=AK066317;ORF_evidence=Q0D4N7;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Zinc finger%2C NHR/GATA-type (IPR013088),Zinc finger%2C GATA-type (IPR000679),FAR1 DNA binding domain (IPR004330),MULE transposase domain (IPR018289),Zinc finger%2C SWIM-type (IPR007527),Zinc finger%2C PMZ-type (IPR006564);NIAS_FLcDNA=J013064I12;Manual Curation=April 23%2C 2019;Literature_PMID=29181013;Oryzabase=20502;Expression=AK066317;TENOR=Os07t0615900-02
Chr07	irgsp1_rep	five_prime_UTR	25372078	25372233	.	+	.	Parent=Os07t0615900-02
Chr07	irgsp1_rep	CDS	25372234	25372424	.	+	0	Parent=Os07t0615900-02
Chr07	irgsp1_rep	CDS	25372666	25372768	.	+	1	Parent=Os07t0615900-02
Chr07	irgsp1_rep	CDS	25372974	25374827	.	+	0	Parent=Os07t0615900-02
Chr07	irgsp1_rep	CDS	25374913	25374963	.	+	0	Parent=Os07t0615900-02
Chr07	irgsp1_rep	three_prime_UTR	25374964	25374968	.	+	.	Parent=Os07t0615900-02
Chr07	irgsp1_rep	three_prime_UTR	25375291	25376126	.	+	.	Parent=Os07t0615900-02
Chr07	irgsp1_rep	mRNA	25381698	25389532	.	+	.	ID=Os07t0616000-01;Name=Os07t0616000-01;Locus_id=Os07g0616000;RAP-DB Gene Symbol Synonym(s)=EP2%2C SRS1%2C DEP2%2C SRS1/DEP2;RAP-DB Gene Name Synonym(s)=ERECT PANICLE2%2C SMALL AND ROUND SEED 1%2C DENSE AND ERECT PANICLE 2;CGSNL Gene Symbol=EP2;CGSNL Gene Name=ERECT PANICLE 2;Oryzabase Gene Symbol Synonym(s)=ep2%2C EP2/DEP2/SRS1%2C SRS1/DEP2%2C DEP2%2C SRS1%2C CL7(t);Oryzabase Gene Name Synonym(s)=erect panical 2%2C Erect panicle2%2C erect panicle2-1%2C erect panicle2-2%2C dense and erect panicle 2%2C small and round seed 1%2C cleistogamy 7%2C cleistogamy gene on Chromosome 7;Note=Regulation of panicle erectness%2C panicle length and grain size;Transcript_evidence=AK120310,GQ449684 (Zhongxian 3037);ORF_evidence=Q0D4N6,B8B8K3 (indica);NIAS_FLcDNA=J013055F14;Manual Curation=September 6%2C 2017;Literature_PMID=21317545,19933874;Oryzabase=8741;Expression=AK120310;TENOR=Os07t0616000-01;KEGG=Os07t0616000-01
Chr07	irgsp1_rep	five_prime_UTR	25381698	25382027	.	+	.	Parent=Os07t0616000-01
Chr07	irgsp1_rep	CDS	25382028	25382086	.	+	0	Parent=Os07t0616000-01
Chr07	irgsp1_rep	CDS	25382169	25382348	.	+	1	Parent=Os07t0616000-01
Chr07	irgsp1_rep	CDS	25382452	25382554	.	+	1	Parent=Os07t0616000-01
Chr07	irgsp1_rep	CDS	25382675	25382699	.	+	0	Parent=Os07t0616000-01
Chr07	irgsp1_rep	CDS	25383167	25383194	.	+	2	Parent=Os07t0616000-01
Chr07	irgsp1_rep	CDS	25384183	25384335	.	+	1	Parent=Os07t0616000-01
Chr07	irgsp1_rep	CDS	25384919	25387001	.	+	1	Parent=Os07t0616000-01
Chr07	irgsp1_rep	CDS	25387246	25388563	.	+	0	Parent=Os07t0616000-01
Chr07	irgsp1_rep	CDS	25388836	25388919	.	+	2	Parent=Os07t0616000-01
Chr07	irgsp1_rep	CDS	25389061	25389125	.	+	2	Parent=Os07t0616000-01
Chr07	irgsp1_rep	three_prime_UTR	25389126	25389532	.	+	.	Parent=Os07t0616000-01
Chr07	irgsp1_rep	mRNA	25387677	25389441	.	+	.	ID=Os07t0616000-02;Name=Os07t0616000-02;Locus_id=Os07g0616000;CGSNL Gene Symbol=EP2;CGSNL Gene Name=ERECT PANICLE 2;Oryzabase Gene Symbol Synonym(s)=ep2%2C EP2/DEP2/SRS1%2C SRS1/DEP2%2C DEP2%2C SRS1%2C CL7(t);Oryzabase Gene Name Synonym(s)=erect panical 2%2C Erect panicle2%2C erect panicle2-1%2C erect panicle2-2%2C dense and erect panicle 2%2C small and round seed 1%2C cleistogamy 7%2C cleistogamy gene on Chromosome 7;Note=Hypothetical conserved gene.;Transcript_evidence=AK109921 (DDBJ%2C Best hit);ORF_evidence=B8B8K3 (UniProt);NIAS_FLcDNA=002-150-G01;Oryzabase=8741;Expression=AK109921;TENOR=Os07t0616000-02;KEGG=Os07t0616000-02
Chr07	irgsp1_rep	five_prime_UTR	25387677	25387677	.	+	.	Parent=Os07t0616000-02
Chr07	irgsp1_rep	CDS	25387678	25388563	.	+	0	Parent=Os07t0616000-02
Chr07	irgsp1_rep	CDS	25388836	25388919	.	+	2	Parent=Os07t0616000-02
Chr07	irgsp1_rep	CDS	25389061	25389125	.	+	2	Parent=Os07t0616000-02
Chr07	irgsp1_rep	three_prime_UTR	25389126	25389441	.	+	.	Parent=Os07t0616000-02
Chr07	irgsp1_rep	mRNA	25389683	25391554	.	+	.	ID=Os07t0616100-01;Name=Os07t0616100-01;Locus_id=Os07g0616100;Note=Conserved hypothetical protein.;Transcript_evidence=AK064501 (DDBJ%2C Best hit);ORF_evidence=Q5N7S3 (UniProt);NIAS_FLcDNA=002-111-D05;TENOR=Os07t0616100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	25389683	25391061	.	+	.	Parent=Os07t0616100-01
Chr07	irgsp1_rep	CDS	25391062	25391232	.	+	0	Parent=Os07t0616100-01
Chr07	irgsp1_rep	three_prime_UTR	25391233	25391554	.	+	.	Parent=Os07t0616100-01
Chr07	irgsp1_rep	mRNA	25393024	25398600	.	-	.	ID=Os07t0616200-01;Name=Os07t0616200-01;Locus_id=Os07g0616200;Note=Similar to Beta-ketoacyl-ACP synthase.;Transcript_evidence=AK067275 (DDBJ%2C Best hit);ORF_evidence=A3BT95 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: metabolic process (GO:0008152),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Beta-ketoacyl synthase (IPR000794),Beta-ketoacyl synthase%2C N-terminal (IPR014030),Beta-ketoacyl synthase%2C C-terminal (IPR014031),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039),3-oxoacyl-[acyl-carrier-protein] synthase 2 (IPR017568),Beta-ketoacyl synthase%2C active site (IPR018201);NIAS_FLcDNA=J013098L18;Expression=AK067275;TENOR=Os07t0616200-01;KEGG=Os07t0616200-01 (EC:2.3.1.179)
Chr07	irgsp1_rep	five_prime_UTR	25398292	25398600	.	-	.	Parent=Os07t0616200-01
Chr07	irgsp1_rep	CDS	25398075	25398291	.	-	0	Parent=Os07t0616200-01
Chr07	irgsp1_rep	CDS	25397010	25397212	.	-	2	Parent=Os07t0616200-01
Chr07	irgsp1_rep	CDS	25396721	25396924	.	-	0	Parent=Os07t0616200-01
Chr07	irgsp1_rep	CDS	25396501	25396611	.	-	0	Parent=Os07t0616200-01
Chr07	irgsp1_rep	CDS	25396323	25396418	.	-	0	Parent=Os07t0616200-01
Chr07	irgsp1_rep	CDS	25396200	25396245	.	-	0	Parent=Os07t0616200-01
Chr07	irgsp1_rep	CDS	25395990	25396069	.	-	2	Parent=Os07t0616200-01
Chr07	irgsp1_rep	CDS	25395686	25395754	.	-	0	Parent=Os07t0616200-01
Chr07	irgsp1_rep	CDS	25395474	25395558	.	-	0	Parent=Os07t0616200-01
Chr07	irgsp1_rep	CDS	25395227	25395381	.	-	2	Parent=Os07t0616200-01
Chr07	irgsp1_rep	CDS	25395074	25395154	.	-	0	Parent=Os07t0616200-01
Chr07	irgsp1_rep	CDS	25393937	25393996	.	-	0	Parent=Os07t0616200-01
Chr07	irgsp1_rep	CDS	25393550	25393666	.	-	0	Parent=Os07t0616200-01
Chr07	irgsp1_rep	three_prime_UTR	25393024	25393549	.	-	.	Parent=Os07t0616200-01
Chr07	irgsp1_rep	mRNA	25408400	25413093	.	+	.	ID=Os07t0616500-01;Name=Os07t0616500-01;Locus_id=Os07g0616500;CGSNL Gene Symbol=GLO4;CGSNL Gene Name=GLYCOLATE OXIDASE 4;Oryzabase Gene Symbol Synonym(s)=GLO5%2C OsGLO5%2C OsGLO4;Oryzabase Gene Name Synonym(s)=Glycolate oxidase 5%2C Glycolate oxidase 4;Note=Similar to (S)-2-hydroxy-acid oxidase%2C peroxisomal (EC 1.1.3.15) (Glycolate oxidase) (GOX) (Short chain alpha-hydroxy acid oxidase).;Transcript_evidence=AK071738 (DDBJ%2C Best hit);ORF_evidence=Q8H3I4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FMN-dependent dehydrogenase (IPR000262),FMN-dependent alpha-hydroxy acid dehydrogenase%2C active site (IPR008259),Alpha-hydroxy acid dehydrogenase%2C FMN-dependent (IPR012133),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J023110H08;Oryzabase=12476;Expression=AK071738;TENOR=Os07t0616500-01;KEGG=Os07t0616500-01 (EC:1.1.3.15)
Chr07	irgsp1_rep	five_prime_UTR	25408400	25408468	.	+	.	Parent=Os07t0616500-01
Chr07	irgsp1_rep	five_prime_UTR	25409665	25409666	.	+	.	Parent=Os07t0616500-01
Chr07	irgsp1_rep	CDS	25409667	25409812	.	+	0	Parent=Os07t0616500-01
Chr07	irgsp1_rep	CDS	25409999	25410123	.	+	1	Parent=Os07t0616500-01
Chr07	irgsp1_rep	CDS	25410230	25410276	.	+	2	Parent=Os07t0616500-01
Chr07	irgsp1_rep	CDS	25410372	25410449	.	+	0	Parent=Os07t0616500-01
Chr07	irgsp1_rep	CDS	25410529	25410653	.	+	0	Parent=Os07t0616500-01
Chr07	irgsp1_rep	CDS	25410892	25410952	.	+	1	Parent=Os07t0616500-01
Chr07	irgsp1_rep	CDS	25411303	25411365	.	+	0	Parent=Os07t0616500-01
Chr07	irgsp1_rep	CDS	25411842	25411911	.	+	0	Parent=Os07t0616500-01
Chr07	irgsp1_rep	CDS	25412320	25412525	.	+	2	Parent=Os07t0616500-01
Chr07	irgsp1_rep	CDS	25412654	25412833	.	+	0	Parent=Os07t0616500-01
Chr07	irgsp1_rep	three_prime_UTR	25412834	25413093	.	+	.	Parent=Os07t0616500-01
Chr07	irgsp1_rep	mRNA	25413432	25415684	.	-	.	ID=Os07t0616600-02;Name=Os07t0616600-02;Locus_id=Os07g0616600;Oryzabase Gene Symbol Synonym(s)=40SRPS%2C OsRbs5%2C Rbs5;Oryzabase Gene Name Synonym(s)=40S ribosomal protein;Note=Similar to 40S ribosomal protein SA (p40) (Laminin receptor homolog).;Transcript_evidence=AK102735 (DDBJ%2C Best hit),AK058308 (DDBJ%2C Best hit),AK103952 (DDBJ%2C Best hit),AK105968 (DDBJ%2C Best hit);ORF_evidence=B6SSF3 (UniProt);NIAS_FLcDNA=J033106C12,001-013-H07,001-014-F07,001-205-E10;Oryzabase=20412;Expression=AK102735;TENOR=Os07t0616600-02;KEGG=Os07t0616600-02
Chr07	irgsp1_rep	five_prime_UTR	25415590	25415684	.	-	.	Parent=Os07t0616600-02
Chr07	irgsp1_rep	CDS	25415445	25415589	.	-	0	Parent=Os07t0616600-02
Chr07	irgsp1_rep	CDS	25414614	25414876	.	-	2	Parent=Os07t0616600-02
Chr07	irgsp1_rep	CDS	25414328	25414525	.	-	0	Parent=Os07t0616600-02
Chr07	irgsp1_rep	CDS	25414034	25414238	.	-	0	Parent=Os07t0616600-02
Chr07	irgsp1_rep	CDS	25413760	25413866	.	-	2	Parent=Os07t0616600-02
Chr07	irgsp1_rep	three_prime_UTR	25413432	25413759	.	-	.	Parent=Os07t0616600-02
Chr07	irgsp1_rep	mRNA	25427751	25435536	.	-	.	ID=Os07t0616750-01;Name=Os07t0616750-01;Locus_id=Os07g0616750;Note=Hypothetical gene.;Transcript_evidence=AK288595 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J090051J16;TENOR=Os07t0616750-01;KEGG=Os07t0616750-01
Chr07	irgsp1_rep	CDS	25435338	25435536	.	-	0	Parent=Os07t0616750-01
Chr07	irgsp1_rep	CDS	25429425	25429471	.	-	2	Parent=Os07t0616750-01
Chr07	irgsp1_rep	CDS	25428400	25428432	.	-	0	Parent=Os07t0616750-01
Chr07	irgsp1_rep	three_prime_UTR	25427751	25428399	.	-	.	Parent=Os07t0616750-01
Chr07	irgsp1_rep	mRNA	25429639	25435132	.	+	.	ID=Os07t0616800-01;Name=Os07t0616800-01;Locus_id=Os07g0616800;RAP-DB Gene Symbol Synonym(s)=Sus3%2C OsSUS3%2C Apq1;RAP-DB Gene Name Synonym(s)=sucrose synthase 3%2C Appearance quality of brown rice 1;CGSNL Gene Symbol=RSUS3;CGSNL Gene Name=SUCROSE SYNTHASE 3;Oryzabase Gene Symbol Synonym(s)=RSus3(t)%2C SUS3%2C SS3%2C OsScS3%2C RSs3%2C RSus3%2C OsSUS3%2C RSS3%2C OsEnS-111;Oryzabase Gene Name Synonym(s)=Rice sucrose synthase-3(t)%2C Sucrose synthase 3%2C Sucrose-UDP glucosyltransferase 3%2C Sucrose synthase-3%2C rice SuSy gene 3%2C endosperm-specific gene 111;Note=Sucrose synthase%2C Regulation of cellulose and hemicelluloses biosyntheses;Transcript_evidence=AK100306;ORF_evidence=Q43009;GO=Biological Process: sucrose metabolic process (GO:0005985),Molecular Function: sucrose synthase activity (GO:0016157);InterPro=Sucrose synthase%2C plant/cyanobacteria (IPR012820),Sucrose synthase (IPR000368),Glycosyl transferase%2C family 1 (IPR001296);NIAS_FLcDNA=J023078G01;Manual Curation=August 15%2C 2018;Literature_PMID=30100800,28932262;Oryzabase=2200;Expression=AK100306;TENOR=Os07t0616800-01;KEGG=Os07t0616800-01 (EC:2.4.1.13)
Chr07	irgsp1_rep	five_prime_UTR	25429639	25429702	.	+	.	Parent=Os07t0616800-01
Chr07	irgsp1_rep	five_prime_UTR	25430571	25430597	.	+	.	Parent=Os07t0616800-01
Chr07	irgsp1_rep	CDS	25430598	25430707	.	+	0	Parent=Os07t0616800-01
Chr07	irgsp1_rep	CDS	25431253	25431382	.	+	1	Parent=Os07t0616800-01
Chr07	irgsp1_rep	CDS	25431478	25431629	.	+	0	Parent=Os07t0616800-01
Chr07	irgsp1_rep	CDS	25431715	25431907	.	+	1	Parent=Os07t0616800-01
Chr07	irgsp1_rep	CDS	25432085	25432203	.	+	0	Parent=Os07t0616800-01
Chr07	irgsp1_rep	CDS	25432291	25432507	.	+	1	Parent=Os07t0616800-01
Chr07	irgsp1_rep	CDS	25432618	25432713	.	+	0	Parent=Os07t0616800-01
Chr07	irgsp1_rep	CDS	25432829	25433002	.	+	0	Parent=Os07t0616800-01
Chr07	irgsp1_rep	CDS	25433110	25433226	.	+	0	Parent=Os07t0616800-01
Chr07	irgsp1_rep	CDS	25433322	25433488	.	+	0	Parent=Os07t0616800-01
Chr07	irgsp1_rep	CDS	25433567	25433791	.	+	1	Parent=Os07t0616800-01
Chr07	irgsp1_rep	CDS	25433879	25434197	.	+	1	Parent=Os07t0616800-01
Chr07	irgsp1_rep	CDS	25434283	25434527	.	+	0	Parent=Os07t0616800-01
Chr07	irgsp1_rep	CDS	25434622	25434760	.	+	1	Parent=Os07t0616800-01
Chr07	irgsp1_rep	CDS	25434857	25434904	.	+	0	Parent=Os07t0616800-01
Chr07	irgsp1_rep	three_prime_UTR	25434905	25435132	.	+	.	Parent=Os07t0616800-01
Chr07	irgsp1_rep	mRNA	25430588	25434974	.	-	.	ID=Os07t0616850-00;Name=Os07t0616850-00;Locus_id=Os07g0616850;Note=Hypothetical protein.;Transcript_evidence=tplb0054p19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0616850-00
Chr07	irgsp1_rep	five_prime_UTR	25434974	25434974	.	-	.	Parent=Os07t0616850-00
Chr07	irgsp1_rep	CDS	25434856	25434973	.	-	0	Parent=Os07t0616850-00
Chr07	irgsp1_rep	CDS	25434622	25434759	.	-	2	Parent=Os07t0616850-00
Chr07	irgsp1_rep	CDS	25434307	25434527	.	-	2	Parent=Os07t0616850-00
Chr07	irgsp1_rep	three_prime_UTR	25434280	25434306	.	-	.	Parent=Os07t0616850-00
Chr07	irgsp1_rep	three_prime_UTR	25433871	25434194	.	-	.	Parent=Os07t0616850-00
Chr07	irgsp1_rep	three_prime_UTR	25433576	25433781	.	-	.	Parent=Os07t0616850-00
Chr07	irgsp1_rep	three_prime_UTR	25433341	25433499	.	-	.	Parent=Os07t0616850-00
Chr07	irgsp1_rep	three_prime_UTR	25433120	25433242	.	-	.	Parent=Os07t0616850-00
Chr07	irgsp1_rep	three_prime_UTR	25432825	25433013	.	-	.	Parent=Os07t0616850-00
Chr07	irgsp1_rep	three_prime_UTR	25432627	25432707	.	-	.	Parent=Os07t0616850-00
Chr07	irgsp1_rep	three_prime_UTR	25432289	25432515	.	-	.	Parent=Os07t0616850-00
Chr07	irgsp1_rep	three_prime_UTR	25432084	25432201	.	-	.	Parent=Os07t0616850-00
Chr07	irgsp1_rep	three_prime_UTR	25431718	25431906	.	-	.	Parent=Os07t0616850-00
Chr07	irgsp1_rep	three_prime_UTR	25431475	25431633	.	-	.	Parent=Os07t0616850-00
Chr07	irgsp1_rep	three_prime_UTR	25431263	25431379	.	-	.	Parent=Os07t0616850-00
Chr07	irgsp1_rep	three_prime_UTR	25430588	25430714	.	-	.	Parent=Os07t0616850-00
Chr07	irgsp1_rep	mRNA	25435750	25439659	.	+	.	ID=Os07t0616900-01;Name=Os07t0616900-01;Locus_id=Os07g0616900;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK071047 (DDBJ%2C Best hit);ORF_evidence=NP_001148140.1 (RefSeq);GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C FYVE-type (IPR000306),Ysc84 actin-binding domain (IPR007461),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C FYVE-related (IPR017455);NIAS_FLcDNA=J023077A06;Expression=AK071047;TENOR=Os07t0616900-01;KEGG=Os07t0616900-01
Chr07	irgsp1_rep	five_prime_UTR	25435750	25435859	.	+	.	Parent=Os07t0616900-01
Chr07	irgsp1_rep	five_prime_UTR	25436493	25436538	.	+	.	Parent=Os07t0616900-01
Chr07	irgsp1_rep	CDS	25436539	25437345	.	+	0	Parent=Os07t0616900-01
Chr07	irgsp1_rep	CDS	25437430	25437630	.	+	0	Parent=Os07t0616900-01
Chr07	irgsp1_rep	CDS	25438273	25438468	.	+	0	Parent=Os07t0616900-01
Chr07	irgsp1_rep	CDS	25439163	25439347	.	+	2	Parent=Os07t0616900-01
Chr07	irgsp1_rep	three_prime_UTR	25439348	25439659	.	+	.	Parent=Os07t0616900-01
Chr07	irgsp1_rep	mRNA	25440932	25442669	.	-	.	ID=Os07t0617000-01;Name=Os07t0617000-01;Locus_id=Os07g0617000;CGSNL Gene Symbol=ERF65;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 65;Oryzabase Gene Symbol Synonym(s)=OsERF#065%2C OsERF065%2C OsERF65%2C AP2/EREBP#107%2C AP2/EREBP107;Oryzabase Gene Name Synonym(s)=ethylene response factor 65%2C APETALA2/ethylene-responsive element binding protein 107;Note=Similar to Ethylene response factor 2.;Transcript_evidence=AK061047 (DDBJ%2C Best hit);ORF_evidence=A2YNQ4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=006-205-F01;Oryzabase=10578;Expression=AK061047;TENOR=Os07t0617000-01;KEGG=Os07t0617000-01
Chr07	irgsp1_rep	five_prime_UTR	25442469	25442669	.	-	.	Parent=Os07t0617000-01
Chr07	irgsp1_rep	CDS	25442219	25442468	.	-	0	Parent=Os07t0617000-01
Chr07	irgsp1_rep	CDS	25441119	25441897	.	-	2	Parent=Os07t0617000-01
Chr07	irgsp1_rep	three_prime_UTR	25440932	25441118	.	-	.	Parent=Os07t0617000-01
Chr07	irgsp1_rep	mRNA	25440818	25442571	.	-	.	ID=Os07t0617000-02;Name=Os07t0617000-02;Locus_id=Os07g0617000;CGSNL Gene Symbol=ERF65;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 65;Oryzabase Gene Symbol Synonym(s)=OsERF#065%2C OsERF065%2C OsERF65%2C AP2/EREBP#107%2C AP2/EREBP107;Oryzabase Gene Name Synonym(s)=ethylene response factor 65%2C APETALA2/ethylene-responsive element binding protein 107;Note=Similar to Ethylene response factor 2.;Transcript_evidence=AK109360 (DDBJ%2C Best hit),AK067060 (DDBJ%2C Best hit);ORF_evidence=A2YNQ4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=006-206-B03,J013090P08;Oryzabase=10578;Expression=AK109360;TENOR=Os07t0617000-02;KEGG=Os07t0617000-02
Chr07	irgsp1_rep	five_prime_UTR	25442469	25442571	.	-	.	Parent=Os07t0617000-02
Chr07	irgsp1_rep	CDS	25442219	25442468	.	-	0	Parent=Os07t0617000-02
Chr07	irgsp1_rep	CDS	25441119	25441897	.	-	2	Parent=Os07t0617000-02
Chr07	irgsp1_rep	three_prime_UTR	25440818	25441118	.	-	.	Parent=Os07t0617000-02
Chr07	irgsp1_rep	mRNA	25446542	25447193	.	+	.	ID=Os07t0617100-01;Name=Os07t0617100-01;Locus_id=Os07g0617100;Note=Plant disease resistance response protein family protein.;Transcript_evidence=AK240805 (DDBJ%2C Best hit);ORF_evidence=B6U8G2 (UniProt);InterPro=Plant disease resistance response protein (IPR004265);NIAS_FLcDNA=J065006B13;TENOR=Os07t0617100-01;KEGG=Os07t0617100-01
Chr07	irgsp1_rep	five_prime_UTR	25446542	25446582	.	+	.	Parent=Os07t0617100-01
Chr07	irgsp1_rep	CDS	25446583	25447110	.	+	0	Parent=Os07t0617100-01
Chr07	irgsp1_rep	three_prime_UTR	25447111	25447193	.	+	.	Parent=Os07t0617100-01
Chr07	irgsp1_rep	mRNA	25469511	25470146	.	+	.	ID=Os07t0617500-00;Name=Os07t0617500-00;Locus_id=Os07g0617500;Note=Plant disease resistance response protein family protein.;Transcript_evidence=AK331736 (DDBJ);ORF_evidence=B6U8G2 (UniProt);InterPro=Plant disease resistance response protein (IPR004265);TENOR=Os07t0617500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	25469511	25469550	.	+	.	Parent=Os07t0617500-00
Chr07	irgsp1_rep	CDS	25469551	25470120	.	+	0	Parent=Os07t0617500-00
Chr07	irgsp1_rep	three_prime_UTR	25470121	25470146	.	+	.	Parent=Os07t0617500-00
Chr07	irgsp1_rep	mRNA	25477160	25481302	.	+	.	ID=Os07t0617600-01;Name=Os07t0617600-01;Locus_id=Os07g0617600;Note=Hypothetical conserved gene.;Transcript_evidence=AK289065 (DDBJ%2C Best hit);ORF_evidence=Q8GRJ6 (UniProt);NIAS_FLcDNA=J090093P18;TENOR=Os07t0617600-01;KEGG=Os07t0617600-01
Chr07	irgsp1_rep	five_prime_UTR	25477160	25480515	.	+	.	Parent=Os07t0617600-01
Chr07	irgsp1_rep	CDS	25480516	25480761	.	+	0	Parent=Os07t0617600-01
Chr07	irgsp1_rep	three_prime_UTR	25480762	25481302	.	+	.	Parent=Os07t0617600-01
Chr07	irgsp1_rep	mRNA	25488479	25489870	.	+	.	ID=Os07t0617700-01;Name=Os07t0617700-01;Locus_id=Os07g0617700;Oryzabase Gene Symbol Synonym(s)=OsFbox397%2C Os_F0108;Oryzabase Gene Name Synonym(s)=F-box protein 397;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK288676 (DDBJ%2C Best hit);ORF_evidence=NP_001151397.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Galactose oxidase/kelch%2C beta-propeller (IPR011043),Kelch-type beta propeller (IPR015915),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J090059E15;Oryzabase=17172;TENOR=Os07t0617700-01;KEGG=Os07t0617700-01
Chr07	irgsp1_rep	five_prime_UTR	25488479	25488512	.	+	.	Parent=Os07t0617700-01
Chr07	irgsp1_rep	CDS	25488513	25489733	.	+	0	Parent=Os07t0617700-01
Chr07	irgsp1_rep	three_prime_UTR	25489734	25489870	.	+	.	Parent=Os07t0617700-01
Chr07	irgsp1_rep	mRNA	25492989	25495303	.	-	.	ID=Os07t0617800-01;Name=Os07t0617800-01;Locus_id=Os07g0617800;CGSNL Gene Symbol=ALAAT3;CGSNL Gene Name=ALANINE AMINOTRANSFERASE 3;Oryzabase Gene Symbol Synonym(s)=OsAlaAT3%2C AlaAT3;Oryzabase Gene Name Synonym(s)=Alanine transaminase 3%2C alanine-aminotransferase3;Note=Similar to Alanine aminotransferase.;Transcript_evidence=AK060481 (DDBJ%2C Best hit);ORF_evidence=P34106 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Biological Process: 1-aminocyclopropane-1-carboxylate biosynthetic process (GO:0042218),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: 1-aminocyclopropane-1-carboxylate synthase activity (GO:0016847),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=1-aminocyclopropane-1-carboxylate synthase (IPR001176),Aminotransferase%2C class I/classII (IPR004839),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=001-012-G11;Oryzabase=20400;Expression=AK060481;TENOR=Os07t0617800-01;KEGG=Os07t0617800-01 (EC:2.6.1.2)
Chr07	irgsp1_rep	five_prime_UTR	25495302	25495303	.	-	.	Parent=Os07t0617800-01
Chr07	irgsp1_rep	CDS	25495197	25495301	.	-	0	Parent=Os07t0617800-01
Chr07	irgsp1_rep	CDS	25494796	25494933	.	-	0	Parent=Os07t0617800-01
Chr07	irgsp1_rep	CDS	25494526	25494600	.	-	0	Parent=Os07t0617800-01
Chr07	irgsp1_rep	CDS	25494284	25494404	.	-	0	Parent=Os07t0617800-01
Chr07	irgsp1_rep	CDS	25494057	25494211	.	-	2	Parent=Os07t0617800-01
Chr07	irgsp1_rep	CDS	25493908	25493982	.	-	0	Parent=Os07t0617800-01
Chr07	irgsp1_rep	CDS	25493448	25493651	.	-	0	Parent=Os07t0617800-01
Chr07	irgsp1_rep	CDS	25493214	25493330	.	-	0	Parent=Os07t0617800-01
Chr07	irgsp1_rep	three_prime_UTR	25492989	25493213	.	-	.	Parent=Os07t0617800-01
Chr07	irgsp1_rep	mRNA	25494794	25496985	.	+	.	ID=Os07t0617901-00;Name=Os07t0617901-00;Locus_id=Os07g0617901;Note=Non-protein coding transcript.;Transcript_evidence=BT084229 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0617901-00
Chr07	irgsp1_rep	exon	25494794	25494931	.	+	.	Parent=Os07t0617901-00
Chr07	irgsp1_rep	exon	25495195	25495305	.	+	.	Parent=Os07t0617901-00
Chr07	irgsp1_rep	exon	25495461	25495566	.	+	.	Parent=Os07t0617901-00
Chr07	irgsp1_rep	exon	25495640	25495739	.	+	.	Parent=Os07t0617901-00
Chr07	irgsp1_rep	exon	25496175	25496279	.	+	.	Parent=Os07t0617901-00
Chr07	irgsp1_rep	exon	25496392	25496435	.	+	.	Parent=Os07t0617901-00
Chr07	irgsp1_rep	exon	25496922	25496985	.	+	.	Parent=Os07t0617901-00
Chr07	irgsp1_rep	mRNA	25504356	25505462	.	-	.	ID=Os07t0618000-01;Name=Os07t0618000-01;Locus_id=Os07g0618000;Note=Conserved hypothetical protein.;Transcript_evidence=AK105179 (DDBJ%2C Best hit);ORF_evidence=B8B8K8 (UniProt);NIAS_FLcDNA=001-105-D08;Expression=AK105179;TENOR=Os07t0618000-01;KEGG=Os07t0618000-01
Chr07	irgsp1_rep	five_prime_UTR	25505342	25505462	.	-	.	Parent=Os07t0618000-01
Chr07	irgsp1_rep	CDS	25505275	25505341	.	-	0	Parent=Os07t0618000-01
Chr07	irgsp1_rep	CDS	25504535	25504710	.	-	2	Parent=Os07t0618000-01
Chr07	irgsp1_rep	three_prime_UTR	25504356	25504534	.	-	.	Parent=Os07t0618000-01
Chr07	irgsp1_rep	mRNA	25514029	25514702	.	-	.	ID=Os07t0618266-00;Name=Os07t0618266-00;Locus_id=Os07g0618266;Note=Hypothetical conserved gene.;Transcript_evidence=AK062794 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;Expression=AK062794;TENOR=Os07t0618266-00;KEGG=Os07t0618266-00
Chr07	irgsp1_rep	five_prime_UTR	25514652	25514702	.	-	.	Parent=Os07t0618266-00
Chr07	irgsp1_rep	CDS	25514313	25514651	.	-	0	Parent=Os07t0618266-00
Chr07	irgsp1_rep	three_prime_UTR	25514029	25514312	.	-	.	Parent=Os07t0618266-00
Chr07	irgsp1_rep	mRNA	25516454	25523153	.	+	.	ID=Os07t0618400-01;Name=Os07t0618400-01;Locus_id=Os07g0618400;Note=Similar to Leucine-rich repeat transmembrane protein kinase 1 (Fragment).;Transcript_evidence=AK111826 (DDBJ%2C Best hit);ORF_evidence=B7F414 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023061M23;Expression=AK111826;TENOR=Os07t0618400-01;KEGG=Os07t0618400-01
Chr07	irgsp1_rep	five_prime_UTR	25516454	25517019	.	+	.	Parent=Os07t0618400-01
Chr07	irgsp1_rep	CDS	25517020	25517137	.	+	0	Parent=Os07t0618400-01
Chr07	irgsp1_rep	CDS	25518668	25518800	.	+	2	Parent=Os07t0618400-01
Chr07	irgsp1_rep	CDS	25518887	25518958	.	+	1	Parent=Os07t0618400-01
Chr07	irgsp1_rep	CDS	25519056	25519124	.	+	1	Parent=Os07t0618400-01
Chr07	irgsp1_rep	CDS	25519209	25519280	.	+	1	Parent=Os07t0618400-01
Chr07	irgsp1_rep	CDS	25519372	25519440	.	+	1	Parent=Os07t0618400-01
Chr07	irgsp1_rep	CDS	25519564	25519635	.	+	1	Parent=Os07t0618400-01
Chr07	irgsp1_rep	CDS	25519735	25519800	.	+	1	Parent=Os07t0618400-01
Chr07	irgsp1_rep	CDS	25519879	25519944	.	+	1	Parent=Os07t0618400-01
Chr07	irgsp1_rep	CDS	25520032	25520366	.	+	1	Parent=Os07t0618400-01
Chr07	irgsp1_rep	CDS	25520511	25520794	.	+	2	Parent=Os07t0618400-01
Chr07	irgsp1_rep	CDS	25521376	25521647	.	+	0	Parent=Os07t0618400-01
Chr07	irgsp1_rep	CDS	25521732	25521867	.	+	1	Parent=Os07t0618400-01
Chr07	irgsp1_rep	CDS	25522205	25522335	.	+	0	Parent=Os07t0618400-01
Chr07	irgsp1_rep	CDS	25522470	25522626	.	+	1	Parent=Os07t0618400-01
Chr07	irgsp1_rep	CDS	25522765	25522911	.	+	0	Parent=Os07t0618400-01
Chr07	irgsp1_rep	three_prime_UTR	25522912	25523153	.	+	.	Parent=Os07t0618400-01
Chr07	irgsp1_rep	mRNA	25516759	25523182	.	+	.	ID=Os07t0618400-02;Name=Os07t0618400-02;Locus_id=Os07g0618400;Note=Similar to Leucine-rich repeat transmembrane protein kinase 1 (Fragment).;Transcript_evidence=AK111671 (DDBJ%2C Best hit);ORF_evidence=Q5GAP9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013154F15;Expression=AK111671;TENOR=Os07t0618400-02;KEGG=Os07t0618400-02
Chr07	irgsp1_rep	five_prime_UTR	25516759	25517019	.	+	.	Parent=Os07t0618400-02
Chr07	irgsp1_rep	CDS	25517020	25517137	.	+	0	Parent=Os07t0618400-02
Chr07	irgsp1_rep	CDS	25518668	25518800	.	+	2	Parent=Os07t0618400-02
Chr07	irgsp1_rep	CDS	25518887	25518958	.	+	1	Parent=Os07t0618400-02
Chr07	irgsp1_rep	CDS	25519056	25519124	.	+	1	Parent=Os07t0618400-02
Chr07	irgsp1_rep	CDS	25519209	25519280	.	+	1	Parent=Os07t0618400-02
Chr07	irgsp1_rep	CDS	25519372	25519440	.	+	1	Parent=Os07t0618400-02
Chr07	irgsp1_rep	CDS	25519564	25519635	.	+	1	Parent=Os07t0618400-02
Chr07	irgsp1_rep	CDS	25519735	25519800	.	+	1	Parent=Os07t0618400-02
Chr07	irgsp1_rep	CDS	25519879	25519944	.	+	1	Parent=Os07t0618400-02
Chr07	irgsp1_rep	CDS	25520032	25520366	.	+	1	Parent=Os07t0618400-02
Chr07	irgsp1_rep	CDS	25520511	25520794	.	+	2	Parent=Os07t0618400-02
Chr07	irgsp1_rep	CDS	25521376	25521647	.	+	0	Parent=Os07t0618400-02
Chr07	irgsp1_rep	CDS	25521732	25521867	.	+	1	Parent=Os07t0618400-02
Chr07	irgsp1_rep	CDS	25522205	25522335	.	+	0	Parent=Os07t0618400-02
Chr07	irgsp1_rep	CDS	25522470	25522626	.	+	1	Parent=Os07t0618400-02
Chr07	irgsp1_rep	CDS	25522765	25522911	.	+	0	Parent=Os07t0618400-02
Chr07	irgsp1_rep	three_prime_UTR	25522912	25523182	.	+	.	Parent=Os07t0618400-02
Chr07	irgsp1_rep	mRNA	25519737	25522901	.	-	.	ID=Os07t0618450-00;Name=Os07t0618450-00;Locus_id=Os07g0618450;Note=Non-protein coding transcript.;Transcript_evidence=tplb0033p23 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os07t0618450-00
Chr07	irgsp1_rep	exon	25522752	25522901	.	-	.	Parent=Os07t0618450-00
Chr07	irgsp1_rep	exon	25522462	25522614	.	-	.	Parent=Os07t0618450-00
Chr07	irgsp1_rep	exon	25522189	25522325	.	-	.	Parent=Os07t0618450-00
Chr07	irgsp1_rep	exon	25521740	25521850	.	-	.	Parent=Os07t0618450-00
Chr07	irgsp1_rep	exon	25521370	25521657	.	-	.	Parent=Os07t0618450-00
Chr07	irgsp1_rep	exon	25520586	25520797	.	-	.	Parent=Os07t0618450-00
Chr07	irgsp1_rep	exon	25520094	25520421	.	-	.	Parent=Os07t0618450-00
Chr07	irgsp1_rep	exon	25519874	25519976	.	-	.	Parent=Os07t0618450-00
Chr07	irgsp1_rep	exon	25519737	25519797	.	-	.	Parent=Os07t0618450-00
Chr07	irgsp1_rep	mRNA	25524491	25526932	.	+	.	ID=Os07t0618500-01;Name=Os07t0618500-01;Locus_id=Os07g0618500;Note=Similar to HPPK/DHPS.;Transcript_evidence=AK068210 (DDBJ%2C Best hit);ORF_evidence=A4UIY8 (UniProt);GO=Biological Process: folic acid-containing compound biosynthetic process (GO:0009396),Biological Process: pteridine-containing compound metabolic process (GO:0042558),Biological Process: cellular metabolic process (GO:0044237),Molecular Function: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity (GO:0003848),Molecular Function: dihydropteroate synthase activity (GO:0004156);InterPro=Pterin-binding (IPR000489),7%2C8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase%2C HPPK (IPR000550),Dihydropteroate synthase (IPR006390),Dihydropteroate synthase-like (IPR011005);NIAS_FLcDNA=J013147H17;Expression=AK068210;TENOR=Os07t0618500-01;KEGG=Os07t0618500-01
Chr07	irgsp1_rep	CDS	25524491	25524664	.	+	0	Parent=Os07t0618500-01
Chr07	irgsp1_rep	CDS	25524947	25525022	.	+	0	Parent=Os07t0618500-01
Chr07	irgsp1_rep	CDS	25525110	25526617	.	+	2	Parent=Os07t0618500-01
Chr07	irgsp1_rep	three_prime_UTR	25526618	25526932	.	+	.	Parent=Os07t0618500-01
Chr07	irgsp1_rep	mRNA	25524505	25530261	.	+	.	ID=Os07t0618500-02;Name=Os07t0618500-02;Locus_id=Os07g0618500;Note=Similar to Dihydropterin pyrophosphokinase /dihydropteroate synthase precursor (EC 2.5.1.15).;Transcript_evidence=AK068975 (DDBJ%2C Best hit);ORF_evidence=A4UIY8 (UniProt);GO=Biological Process: folic acid-containing compound biosynthetic process (GO:0009396),Biological Process: pteridine-containing compound metabolic process (GO:0042558),Biological Process: cellular metabolic process (GO:0044237),Molecular Function: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity (GO:0003848),Molecular Function: dihydropteroate synthase activity (GO:0004156);InterPro=Pterin-binding (IPR000489),7%2C8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase%2C HPPK (IPR000550),Dihydropteroate synthase (IPR006390),Dihydropteroate synthase-like (IPR011005);NIAS_FLcDNA=J013170L10;Expression=AK068975;TENOR=Os07t0618500-02;KEGG=Os07t0618500-02 (EC:2.5.1.15)
Chr07	irgsp1_rep	five_prime_UTR	25524505	25524664	.	+	.	Parent=Os07t0618500-02
Chr07	irgsp1_rep	five_prime_UTR	25524884	25524931	.	+	.	Parent=Os07t0618500-02
Chr07	irgsp1_rep	CDS	25524932	25525022	.	+	0	Parent=Os07t0618500-02
Chr07	irgsp1_rep	CDS	25525110	25526617	.	+	2	Parent=Os07t0618500-02
Chr07	irgsp1_rep	three_prime_UTR	25526618	25527543	.	+	.	Parent=Os07t0618500-02
Chr07	irgsp1_rep	three_prime_UTR	25527686	25527775	.	+	.	Parent=Os07t0618500-02
Chr07	irgsp1_rep	three_prime_UTR	25528199	25528292	.	+	.	Parent=Os07t0618500-02
Chr07	irgsp1_rep	three_prime_UTR	25528801	25528925	.	+	.	Parent=Os07t0618500-02
Chr07	irgsp1_rep	three_prime_UTR	25529907	25530261	.	+	.	Parent=Os07t0618500-02
Chr07	irgsp1_rep	mRNA	25530941	25534144	.	+	.	ID=Os07t0618600-01;Name=Os07t0618600-01;Locus_id=Os07g0618600;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK121137 (DDBJ%2C Best hit);ORF_evidence=NP_001147640.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C FYVE-type (IPR000306),Ankyrin repeat (IPR002110),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C FYVE-related (IPR017455),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J023077F04;Expression=AK121137;TENOR=Os07t0618600-01;KEGG=Os07t0618600-01
Chr07	irgsp1_rep	five_prime_UTR	25530941	25531121	.	+	.	Parent=Os07t0618600-01
Chr07	irgsp1_rep	CDS	25531122	25531205	.	+	0	Parent=Os07t0618600-01
Chr07	irgsp1_rep	CDS	25531356	25531412	.	+	0	Parent=Os07t0618600-01
Chr07	irgsp1_rep	CDS	25531553	25531620	.	+	0	Parent=Os07t0618600-01
Chr07	irgsp1_rep	CDS	25531767	25531971	.	+	1	Parent=Os07t0618600-01
Chr07	irgsp1_rep	CDS	25532042	25532166	.	+	0	Parent=Os07t0618600-01
Chr07	irgsp1_rep	CDS	25532445	25532520	.	+	1	Parent=Os07t0618600-01
Chr07	irgsp1_rep	CDS	25532645	25532704	.	+	0	Parent=Os07t0618600-01
Chr07	irgsp1_rep	CDS	25532766	25532816	.	+	0	Parent=Os07t0618600-01
Chr07	irgsp1_rep	CDS	25533243	25533321	.	+	0	Parent=Os07t0618600-01
Chr07	irgsp1_rep	CDS	25533763	25533851	.	+	2	Parent=Os07t0618600-01
Chr07	irgsp1_rep	three_prime_UTR	25533852	25534144	.	+	.	Parent=Os07t0618600-01
Chr07	irgsp1_rep	mRNA	25531184	25534055	.	+	.	ID=Os07t0618600-02;Name=Os07t0618600-02;Locus_id=Os07g0618600;Note=Similar to FYVE zinc finger family protein.;Transcript_evidence=AK062041 (DDBJ%2C Best hit);ORF_evidence=NP_001147640.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C FYVE-type (IPR000306),Ankyrin repeat (IPR002110),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C FYVE-related (IPR017455),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=001-044-A04;Expression=AK062041;TENOR=Os07t0618600-02;KEGG=Os07t0618600-02
Chr07	irgsp1_rep	five_prime_UTR	25531184	25531184	.	+	.	Parent=Os07t0618600-02
Chr07	irgsp1_rep	CDS	25531185	25531205	.	+	0	Parent=Os07t0618600-02
Chr07	irgsp1_rep	CDS	25531356	25531412	.	+	0	Parent=Os07t0618600-02
Chr07	irgsp1_rep	CDS	25531553	25531620	.	+	0	Parent=Os07t0618600-02
Chr07	irgsp1_rep	CDS	25531767	25531971	.	+	1	Parent=Os07t0618600-02
Chr07	irgsp1_rep	CDS	25532045	25532166	.	+	0	Parent=Os07t0618600-02
Chr07	irgsp1_rep	CDS	25532445	25532520	.	+	1	Parent=Os07t0618600-02
Chr07	irgsp1_rep	CDS	25532645	25532704	.	+	0	Parent=Os07t0618600-02
Chr07	irgsp1_rep	CDS	25532766	25532816	.	+	0	Parent=Os07t0618600-02
Chr07	irgsp1_rep	CDS	25533243	25533321	.	+	0	Parent=Os07t0618600-02
Chr07	irgsp1_rep	CDS	25533763	25533851	.	+	2	Parent=Os07t0618600-02
Chr07	irgsp1_rep	three_prime_UTR	25533852	25534055	.	+	.	Parent=Os07t0618600-02
Chr07	irgsp1_rep	mRNA	25535984	25539056	.	+	.	ID=Os07t0618700-01;Name=Os07t0618700-01;Locus_id=Os07g0618700;Note=Conserved hypothetical protein.;Transcript_evidence=AK066033 (DDBJ%2C Best hit);ORF_evidence=B9FU90 (UniProt);NIAS_FLcDNA=J013043D16;Expression=AK066033;TENOR=Os07t0618700-01;KEGG=Os07t0618700-01
Chr07	irgsp1_rep	five_prime_UTR	25535984	25536076	.	+	.	Parent=Os07t0618700-01
Chr07	irgsp1_rep	five_prime_UTR	25536172	25536211	.	+	.	Parent=Os07t0618700-01
Chr07	irgsp1_rep	CDS	25536212	25536265	.	+	0	Parent=Os07t0618700-01
Chr07	irgsp1_rep	CDS	25537528	25537725	.	+	0	Parent=Os07t0618700-01
Chr07	irgsp1_rep	CDS	25537822	25538044	.	+	0	Parent=Os07t0618700-01
Chr07	irgsp1_rep	CDS	25538429	25538574	.	+	2	Parent=Os07t0618700-01
Chr07	irgsp1_rep	three_prime_UTR	25538575	25539056	.	+	.	Parent=Os07t0618700-01
Chr07	irgsp1_rep	mRNA	25540492	25542689	.	+	.	ID=Os07t0618800-01;Name=Os07t0618800-01;Locus_id=Os07g0618800;CGSNL Gene Symbol=CML13;CGSNL Gene Name=CALMODULIN-LIKE PROTEIN 13;Oryzabase Gene Symbol Synonym(s)=OsCML13;Oryzabase Gene Name Synonym(s)=calmodulin-like protein 13;Note=Similar to caltractin.;Transcript_evidence=AK074019 (DDBJ%2C Best hit);ORF_evidence=NP_001150811.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J033074L14;Oryzabase=10499;TENOR=Os07t0618800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	25540492	25540493	.	+	.	Parent=Os07t0618800-01
Chr07	irgsp1_rep	CDS	25540494	25540616	.	+	0	Parent=Os07t0618800-01
Chr07	irgsp1_rep	CDS	25541165	25541285	.	+	0	Parent=Os07t0618800-01
Chr07	irgsp1_rep	CDS	25541375	25541411	.	+	2	Parent=Os07t0618800-01
Chr07	irgsp1_rep	CDS	25541504	25541531	.	+	1	Parent=Os07t0618800-01
Chr07	irgsp1_rep	CDS	25541755	25541907	.	+	0	Parent=Os07t0618800-01
Chr07	irgsp1_rep	CDS	25542246	25542348	.	+	0	Parent=Os07t0618800-01
Chr07	irgsp1_rep	CDS	25542448	25542512	.	+	2	Parent=Os07t0618800-01
Chr07	irgsp1_rep	three_prime_UTR	25542513	25542689	.	+	.	Parent=Os07t0618800-01
Chr07	irgsp1_rep	mRNA	25563426	25567841	.	+	.	ID=Os07t0619100-01;Name=Os07t0619100-01;Locus_id=Os07g0619100;Note=Protein of unknown function DUF827%2C plant family protein.;Transcript_evidence=AK102884 (DDBJ%2C Best hit);ORF_evidence=B9FU92 (UniProt);InterPro=Protein of unknown function DUF827%2C plant (IPR008545);NIAS_FLcDNA=J033112J09;Expression=AK102884;TENOR=Os07t0619100-01;KEGG=Os07t0619100-01
Chr07	irgsp1_rep	five_prime_UTR	25563426	25563655	.	+	.	Parent=Os07t0619100-01
Chr07	irgsp1_rep	five_prime_UTR	25564906	25564954	.	+	.	Parent=Os07t0619100-01
Chr07	irgsp1_rep	CDS	25564955	25565617	.	+	0	Parent=Os07t0619100-01
Chr07	irgsp1_rep	CDS	25565740	25567530	.	+	0	Parent=Os07t0619100-01
Chr07	irgsp1_rep	three_prime_UTR	25567531	25567841	.	+	.	Parent=Os07t0619100-01
Chr07	irgsp1_rep	mRNA	25569076	25572699	.	+	.	ID=Os07t0619200-01;Name=Os07t0619200-01;Locus_id=Os07g0619200;Note=EF hand domain containing protein.;Transcript_evidence=AK100302 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J023078A16;Expression=AK100302;TENOR=Os07t0619200-01;KEGG=Os07t0619200-01
Chr07	irgsp1_rep	five_prime_UTR	25569076	25569190	.	+	.	Parent=Os07t0619200-01
Chr07	irgsp1_rep	five_prime_UTR	25569277	25572065	.	+	.	Parent=Os07t0619200-01
Chr07	irgsp1_rep	CDS	25572066	25572377	.	+	0	Parent=Os07t0619200-01
Chr07	irgsp1_rep	three_prime_UTR	25572378	25572699	.	+	.	Parent=Os07t0619200-01
Chr07	irgsp1_rep	mRNA	25569408	25571773	.	+	.	ID=Os07t0619200-02;Name=Os07t0619200-02;Locus_id=Os07g0619200;Note=Hypothetical gene.;Transcript_evidence=AK072381 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023077I03;Expression=AK072381;TENOR=Os07t0619200-02;KEGG=Os07t0619200-02
Chr07	irgsp1_rep	five_prime_UTR	25569408	25570945	.	+	.	Parent=Os07t0619200-02
Chr07	irgsp1_rep	CDS	25570946	25571242	.	+	0	Parent=Os07t0619200-02
Chr07	irgsp1_rep	three_prime_UTR	25571243	25571773	.	+	.	Parent=Os07t0619200-02
Chr07	irgsp1_rep	mRNA	25572038	25572696	.	+	.	ID=Os07t0619200-04;Name=Os07t0619200-04;Locus_id=Os07g0619200;Note=Similar to EF hand family protein.;Transcript_evidence=AK120482 (DDBJ%2C Best hit),AK243055 (DDBJ%2C Best hit);ORF_evidence=NP_001152558.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J013112H02,J100013J17;TENOR=Os07t0619200-04;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	25572038	25572101	.	+	.	Parent=Os07t0619200-04
Chr07	irgsp1_rep	CDS	25572102	25572377	.	+	0	Parent=Os07t0619200-04
Chr07	irgsp1_rep	three_prime_UTR	25572378	25572696	.	+	.	Parent=Os07t0619200-04
Chr07	irgsp1_rep	mRNA	25585028	25585758	.	+	.	ID=Os07t0619400-01;Name=Os07t0619400-01;Locus_id=Os07g0619400;Note=EF-Hand type domain containing protein.;Transcript_evidence=AK062716 (DDBJ%2C Best hit);ORF_evidence=A2YNR9 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249);NIAS_FLcDNA=001-106-C08;Expression=AK062716;TENOR=Os07t0619400-01;KEGG=Os07t0619400-01
Chr07	irgsp1_rep	five_prime_UTR	25585028	25585110	.	+	.	Parent=Os07t0619400-01
Chr07	irgsp1_rep	CDS	25585111	25585575	.	+	0	Parent=Os07t0619400-01
Chr07	irgsp1_rep	three_prime_UTR	25585576	25585758	.	+	.	Parent=Os07t0619400-01
Chr07	irgsp1_rep	mRNA	25591228	25592770	.	+	.	ID=Os07t0619500-01;Name=Os07t0619500-01;Locus_id=Os07g0619500;Note=Protein of unknown function DUF1645 family protein.;Transcript_evidence=AK072031 (DDBJ%2C Best hit);ORF_evidence=NP_001151935.1 (RefSeq);InterPro=Protein of unknown function DUF1645 (IPR012442);NIAS_FLcDNA=J013104E22;Expression=AK072031;TENOR=Os07t0619500-01;KEGG=Os07t0619500-01
Chr07	irgsp1_rep	five_prime_UTR	25591228	25591552	.	+	.	Parent=Os07t0619500-01
Chr07	irgsp1_rep	CDS	25591553	25592542	.	+	0	Parent=Os07t0619500-01
Chr07	irgsp1_rep	three_prime_UTR	25592543	25592770	.	+	.	Parent=Os07t0619500-01
Chr07	irgsp1_rep	mRNA	25591344	25592810	.	+	.	ID=Os07t0619500-02;Name=Os07t0619500-02;Locus_id=Os07g0619500;Note=Protein of unknown function DUF1645 family protein.;Transcript_evidence=AK107576 (DDBJ%2C Best hit);ORF_evidence=NP_001151935.1 (RefSeq);InterPro=Protein of unknown function DUF1645 (IPR012442);NIAS_FLcDNA=002-130-D09;Expression=AK107576;TENOR=Os07t0619500-02;KEGG=Os07t0619500-02
Chr07	irgsp1_rep	five_prime_UTR	25591344	25591552	.	+	.	Parent=Os07t0619500-02
Chr07	irgsp1_rep	CDS	25591553	25592542	.	+	0	Parent=Os07t0619500-02
Chr07	irgsp1_rep	three_prime_UTR	25592543	25592810	.	+	.	Parent=Os07t0619500-02
Chr07	irgsp1_rep	mRNA	25601642	25606513	.	+	.	ID=Os07t0619600-01;Name=Os07t0619600-01;Locus_id=Os07g0619600;Note=Homeobox domain containing protein.;Transcript_evidence=AK064123 (DDBJ%2C Best hit);ORF_evidence=B9FU94 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);NIAS_FLcDNA=002-102-C10;TENOR=Os07t0619600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	25601642	25601921	.	+	.	Parent=Os07t0619600-01
Chr07	irgsp1_rep	CDS	25601922	25601939	.	+	0	Parent=Os07t0619600-01
Chr07	irgsp1_rep	CDS	25602732	25602822	.	+	0	Parent=Os07t0619600-01
Chr07	irgsp1_rep	CDS	25602910	25603096	.	+	2	Parent=Os07t0619600-01
Chr07	irgsp1_rep	CDS	25603189	25603288	.	+	1	Parent=Os07t0619600-01
Chr07	irgsp1_rep	three_prime_UTR	25603289	25603323	.	+	.	Parent=Os07t0619600-01
Chr07	irgsp1_rep	three_prime_UTR	25603771	25603823	.	+	.	Parent=Os07t0619600-01
Chr07	irgsp1_rep	three_prime_UTR	25604527	25604757	.	+	.	Parent=Os07t0619600-01
Chr07	irgsp1_rep	three_prime_UTR	25604867	25604929	.	+	.	Parent=Os07t0619600-01
Chr07	irgsp1_rep	three_prime_UTR	25605072	25605288	.	+	.	Parent=Os07t0619600-01
Chr07	irgsp1_rep	three_prime_UTR	25605370	25605470	.	+	.	Parent=Os07t0619600-01
Chr07	irgsp1_rep	three_prime_UTR	25606190	25606513	.	+	.	Parent=Os07t0619600-01
Chr07	irgsp1_rep	mRNA	25611983	25616341	.	-	.	ID=Os07t0619700-01;Name=Os07t0619700-01;Locus_id=Os07g0619700;Note=Hypothetical conserved gene.;Transcript_evidence=AK242617 (DDBJ%2C Best hit);ORF_evidence=Q8L414 (UniProt);NIAS_FLcDNA=J090017E08;TENOR=Os07t0619700-01;KEGG=Os07t0619700-01
Chr07	irgsp1_rep	five_prime_UTR	25616265	25616341	.	-	.	Parent=Os07t0619700-01
Chr07	irgsp1_rep	CDS	25615949	25616264	.	-	0	Parent=Os07t0619700-01
Chr07	irgsp1_rep	CDS	25615025	25615142	.	-	2	Parent=Os07t0619700-01
Chr07	irgsp1_rep	CDS	25614635	25614767	.	-	1	Parent=Os07t0619700-01
Chr07	irgsp1_rep	three_prime_UTR	25614553	25614634	.	-	.	Parent=Os07t0619700-01
Chr07	irgsp1_rep	three_prime_UTR	25614377	25614473	.	-	.	Parent=Os07t0619700-01
Chr07	irgsp1_rep	three_prime_UTR	25614158	25614256	.	-	.	Parent=Os07t0619700-01
Chr07	irgsp1_rep	three_prime_UTR	25613569	25613677	.	-	.	Parent=Os07t0619700-01
Chr07	irgsp1_rep	three_prime_UTR	25611983	25612956	.	-	.	Parent=Os07t0619700-01
Chr07	irgsp1_rep	mRNA	25617167	25622439	.	-	.	ID=Os07t0619800-01;Name=Os07t0619800-01;Locus_id=Os07g0619800;Note=Similar to CDPK-related protein kinase.;Transcript_evidence=AK121343 (DDBJ%2C Best hit);ORF_evidence=B6SHU9 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J023121A14;Expression=AK121343;TENOR=Os07t0619800-01;KEGG=Os07t0619800-01
Chr07	irgsp1_rep	five_prime_UTR	25622229	25622439	.	-	.	Parent=Os07t0619800-01
Chr07	irgsp1_rep	CDS	25621680	25622228	.	-	0	Parent=Os07t0619800-01
Chr07	irgsp1_rep	CDS	25619937	25619945	.	-	0	Parent=Os07t0619800-01
Chr07	irgsp1_rep	three_prime_UTR	25619904	25619936	.	-	.	Parent=Os07t0619800-01
Chr07	irgsp1_rep	three_prime_UTR	25619696	25619804	.	-	.	Parent=Os07t0619800-01
Chr07	irgsp1_rep	three_prime_UTR	25619304	25619382	.	-	.	Parent=Os07t0619800-01
Chr07	irgsp1_rep	three_prime_UTR	25618893	25619189	.	-	.	Parent=Os07t0619800-01
Chr07	irgsp1_rep	three_prime_UTR	25618705	25618817	.	-	.	Parent=Os07t0619800-01
Chr07	irgsp1_rep	three_prime_UTR	25618289	25618396	.	-	.	Parent=Os07t0619800-01
Chr07	irgsp1_rep	three_prime_UTR	25618145	25618207	.	-	.	Parent=Os07t0619800-01
Chr07	irgsp1_rep	three_prime_UTR	25617880	25618047	.	-	.	Parent=Os07t0619800-01
Chr07	irgsp1_rep	three_prime_UTR	25617167	25617776	.	-	.	Parent=Os07t0619800-01
Chr07	irgsp1_rep	mRNA	25617165	25621790	.	-	.	ID=Os07t0619800-02;Name=Os07t0619800-02;Locus_id=Os07g0619800;Note=Similar to CDPK-related protein kinase (EC 2.7.1.-) (PK421).;Transcript_evidence=AK067709 (DDBJ%2C Best hit);ORF_evidence=B6SHU9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),EF-hand-like domain (IPR011992),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013118F09;Expression=AK067709;TENOR=Os07t0619800-02;KEGG=Os07t0619800-02 (EC:2.7.11.17)
Chr07	irgsp1_rep	CDS	25621680	25621790	.	-	0	Parent=Os07t0619800-02
Chr07	irgsp1_rep	CDS	25620603	25620733	.	-	0	Parent=Os07t0619800-02
Chr07	irgsp1_rep	CDS	25619904	25619945	.	-	1	Parent=Os07t0619800-02
Chr07	irgsp1_rep	CDS	25619696	25619804	.	-	1	Parent=Os07t0619800-02
Chr07	irgsp1_rep	CDS	25619304	25619382	.	-	0	Parent=Os07t0619800-02
Chr07	irgsp1_rep	CDS	25618893	25619189	.	-	2	Parent=Os07t0619800-02
Chr07	irgsp1_rep	CDS	25618705	25618817	.	-	2	Parent=Os07t0619800-02
Chr07	irgsp1_rep	CDS	25618289	25618396	.	-	0	Parent=Os07t0619800-02
Chr07	irgsp1_rep	CDS	25618145	25618207	.	-	0	Parent=Os07t0619800-02
Chr07	irgsp1_rep	CDS	25617880	25618047	.	-	0	Parent=Os07t0619800-02
Chr07	irgsp1_rep	CDS	25617636	25617776	.	-	0	Parent=Os07t0619800-02
Chr07	irgsp1_rep	three_prime_UTR	25617165	25617635	.	-	.	Parent=Os07t0619800-02
Chr07	irgsp1_rep	mRNA	25617166	25619122	.	-	.	ID=Os07t0619800-03;Name=Os07t0619800-03;Locus_id=Os07g0619800;Note=Similar to CDPK-related protein kinase.;Transcript_evidence=AK119196 (DDBJ%2C Best hit);ORF_evidence=B6SHU9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),EF-hand-like domain (IPR011992),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-041-C09;Expression=AK119196;TENOR=Os07t0619800-03;KEGG=Os07t0619800-03 (EC:2.7.11.17)
Chr07	irgsp1_rep	five_prime_UTR	25619122	25619122	.	-	.	Parent=Os07t0619800-03
Chr07	irgsp1_rep	CDS	25618893	25619121	.	-	0	Parent=Os07t0619800-03
Chr07	irgsp1_rep	CDS	25618705	25618817	.	-	2	Parent=Os07t0619800-03
Chr07	irgsp1_rep	CDS	25618289	25618396	.	-	0	Parent=Os07t0619800-03
Chr07	irgsp1_rep	CDS	25618145	25618207	.	-	0	Parent=Os07t0619800-03
Chr07	irgsp1_rep	CDS	25617880	25618047	.	-	0	Parent=Os07t0619800-03
Chr07	irgsp1_rep	CDS	25617636	25617776	.	-	0	Parent=Os07t0619800-03
Chr07	irgsp1_rep	three_prime_UTR	25617166	25617635	.	-	.	Parent=Os07t0619800-03
Chr07	irgsp1_rep	mRNA	25636741	25639894	.	+	.	ID=Os07t0620200-01;Name=Os07t0620200-01;Locus_id=Os07g0620200;Note=Heat shock protein DnaJ%2C N-terminal domain containing protein.;Transcript_evidence=AK099859 (DDBJ%2C Best hit);ORF_evidence=Q5GAN9 (UniProt);GO=Molecular Function: heat shock protein binding (GO:0031072);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623);NIAS_FLcDNA=J013110N04;Expression=AK099859;TENOR=Os07t0620200-01;KEGG=Os07t0620200-01
Chr07	irgsp1_rep	five_prime_UTR	25636741	25636774	.	+	.	Parent=Os07t0620200-01
Chr07	irgsp1_rep	CDS	25636775	25637965	.	+	0	Parent=Os07t0620200-01
Chr07	irgsp1_rep	three_prime_UTR	25637966	25638353	.	+	.	Parent=Os07t0620200-01
Chr07	irgsp1_rep	three_prime_UTR	25639534	25639894	.	+	.	Parent=Os07t0620200-01
Chr07	irgsp1_rep	mRNA	25640851	25645803	.	+	.	ID=Os07t0620300-01;Name=Os07t0620300-01;Locus_id=Os07g0620300;Note=Clathrin adaptor%2C mu subunit domain containing protein.;Transcript_evidence=AK059588 (DDBJ%2C Best hit);ORF_evidence=XP_002869712.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: clathrin adaptor complex (GO:0030131),Molecular Function: protein binding (GO:0005515);InterPro=Clathrin adaptor%2C mu subunit (IPR001392),Clathrin adaptor%2C mu subunit%2C C-terminal (IPR008968),Longin-like (IPR011012),Clathrin adaptor%2C mu subunit%2C conserved site (IPR018240),AP complex%2C mu/sigma subunit (IPR022775);NIAS_FLcDNA=001-030-C04;Expression=AK059588;TENOR=Os07t0620300-01;KEGG=Os07t0620300-01
Chr07	irgsp1_rep	five_prime_UTR	25640851	25641024	.	+	.	Parent=Os07t0620300-01
Chr07	irgsp1_rep	CDS	25641025	25641082	.	+	0	Parent=Os07t0620300-01
Chr07	irgsp1_rep	CDS	25641226	25641320	.	+	2	Parent=Os07t0620300-01
Chr07	irgsp1_rep	CDS	25642006	25642209	.	+	0	Parent=Os07t0620300-01
Chr07	irgsp1_rep	CDS	25642423	25642539	.	+	0	Parent=Os07t0620300-01
Chr07	irgsp1_rep	CDS	25642664	25642792	.	+	0	Parent=Os07t0620300-01
Chr07	irgsp1_rep	CDS	25643171	25643297	.	+	0	Parent=Os07t0620300-01
Chr07	irgsp1_rep	CDS	25643754	25643857	.	+	2	Parent=Os07t0620300-01
Chr07	irgsp1_rep	CDS	25643949	25644053	.	+	0	Parent=Os07t0620300-01
Chr07	irgsp1_rep	CDS	25644147	25644241	.	+	0	Parent=Os07t0620300-01
Chr07	irgsp1_rep	CDS	25644354	25644439	.	+	1	Parent=Os07t0620300-01
Chr07	irgsp1_rep	CDS	25644547	25644609	.	+	2	Parent=Os07t0620300-01
Chr07	irgsp1_rep	CDS	25644697	25644770	.	+	2	Parent=Os07t0620300-01
Chr07	irgsp1_rep	CDS	25645449	25645547	.	+	0	Parent=Os07t0620300-01
Chr07	irgsp1_rep	three_prime_UTR	25645548	25645803	.	+	.	Parent=Os07t0620300-01
Chr07	irgsp1_rep	mRNA	25640877	25645805	.	+	.	ID=Os07t0620300-02;Name=Os07t0620300-02;Locus_id=Os07g0620300;Note=Clathrin adaptor%2C mu subunit domain containing protein.;Transcript_evidence=AK119518 (DDBJ%2C Best hit);ORF_evidence=XP_002869712.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: clathrin adaptor complex (GO:0030131),Molecular Function: protein binding (GO:0005515);InterPro=Clathrin adaptor%2C mu subunit (IPR001392),Clathrin adaptor%2C mu subunit%2C C-terminal (IPR008968),Longin-like (IPR011012),Clathrin adaptor%2C mu subunit%2C conserved site (IPR018240),AP complex%2C mu/sigma subunit (IPR022775);NIAS_FLcDNA=001-202-C09;Expression=AK119518;TENOR=Os07t0620300-02;KEGG=Os07t0620300-02
Chr07	irgsp1_rep	five_prime_UTR	25640877	25640928	.	+	.	Parent=Os07t0620300-02
Chr07	irgsp1_rep	five_prime_UTR	25640957	25641024	.	+	.	Parent=Os07t0620300-02
Chr07	irgsp1_rep	CDS	25641025	25641082	.	+	0	Parent=Os07t0620300-02
Chr07	irgsp1_rep	CDS	25641226	25641320	.	+	2	Parent=Os07t0620300-02
Chr07	irgsp1_rep	CDS	25642006	25642209	.	+	0	Parent=Os07t0620300-02
Chr07	irgsp1_rep	CDS	25642423	25642539	.	+	0	Parent=Os07t0620300-02
Chr07	irgsp1_rep	CDS	25642664	25642792	.	+	0	Parent=Os07t0620300-02
Chr07	irgsp1_rep	CDS	25643171	25643297	.	+	0	Parent=Os07t0620300-02
Chr07	irgsp1_rep	CDS	25643754	25643857	.	+	2	Parent=Os07t0620300-02
Chr07	irgsp1_rep	CDS	25643949	25644053	.	+	0	Parent=Os07t0620300-02
Chr07	irgsp1_rep	CDS	25644147	25644241	.	+	0	Parent=Os07t0620300-02
Chr07	irgsp1_rep	CDS	25644354	25644439	.	+	1	Parent=Os07t0620300-02
Chr07	irgsp1_rep	CDS	25644547	25644609	.	+	2	Parent=Os07t0620300-02
Chr07	irgsp1_rep	CDS	25644697	25644770	.	+	2	Parent=Os07t0620300-02
Chr07	irgsp1_rep	CDS	25645449	25645547	.	+	0	Parent=Os07t0620300-02
Chr07	irgsp1_rep	three_prime_UTR	25645548	25645805	.	+	.	Parent=Os07t0620300-02
Chr07	irgsp1_rep	mRNA	25640901	25645844	.	+	.	ID=Os07t0620300-03;Name=Os07t0620300-03;Locus_id=Os07g0620300;Note=Clathrin adaptor%2C mu subunit domain containing protein.;Transcript_evidence=AK099000 (DDBJ%2C Best hit),AK099150 (DDBJ%2C Best hit);ORF_evidence=XP_002869712.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: clathrin adaptor complex (GO:0030131),Molecular Function: protein binding (GO:0005515);InterPro=Clathrin adaptor%2C mu subunit (IPR001392),Clathrin adaptor%2C mu subunit%2C C-terminal (IPR008968),Longin-like (IPR011012),Clathrin adaptor%2C mu subunit%2C conserved site (IPR018240),AP complex%2C mu/sigma subunit (IPR022775);NIAS_FLcDNA=J013101H15,J023061O07;TENOR=Os07t0620300-03
Chr07	irgsp1_rep	five_prime_UTR	25640901	25641024	.	+	.	Parent=Os07t0620300-03
Chr07	irgsp1_rep	CDS	25641025	25641082	.	+	0	Parent=Os07t0620300-03
Chr07	irgsp1_rep	CDS	25641226	25641320	.	+	2	Parent=Os07t0620300-03
Chr07	irgsp1_rep	CDS	25642006	25642209	.	+	0	Parent=Os07t0620300-03
Chr07	irgsp1_rep	CDS	25642423	25642539	.	+	0	Parent=Os07t0620300-03
Chr07	irgsp1_rep	CDS	25642664	25642792	.	+	0	Parent=Os07t0620300-03
Chr07	irgsp1_rep	CDS	25643171	25643297	.	+	0	Parent=Os07t0620300-03
Chr07	irgsp1_rep	CDS	25643754	25643857	.	+	2	Parent=Os07t0620300-03
Chr07	irgsp1_rep	CDS	25643949	25644053	.	+	0	Parent=Os07t0620300-03
Chr07	irgsp1_rep	CDS	25644147	25644241	.	+	0	Parent=Os07t0620300-03
Chr07	irgsp1_rep	CDS	25644354	25644439	.	+	1	Parent=Os07t0620300-03
Chr07	irgsp1_rep	CDS	25644547	25644609	.	+	2	Parent=Os07t0620300-03
Chr07	irgsp1_rep	CDS	25644697	25644770	.	+	2	Parent=Os07t0620300-03
Chr07	irgsp1_rep	CDS	25645449	25645547	.	+	0	Parent=Os07t0620300-03
Chr07	irgsp1_rep	three_prime_UTR	25645548	25645844	.	+	.	Parent=Os07t0620300-03
Chr07	irgsp1_rep	mRNA	25645996	25649158	.	-	.	ID=Os07t0620400-01;Name=Os07t0620400-01;Locus_id=Os07g0620400;CGSNL Gene Symbol=GB1B;CGSNL Gene Name=GTP-BINDING PROTEIN 1B;Oryzabase Gene Symbol Synonym(s)=OsGB1b%2C GB1b;Oryzabase Gene Name Synonym(s)=GTP-binding protein 1b;Note=Similar to GTP-binding protein-like.;Transcript_evidence=AK099524 (DDBJ%2C Best hit);ORF_evidence=O65038 (UniProt);GO=Biological Process: small GTPase mediated signal transduction (GO:0007264),Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C ARF/SAR type (IPR006689),Small GTPase superfamily%2C ARF type (IPR024156);NIAS_FLcDNA=J013030K11;Oryzabase=21014;Expression=AK099524;TENOR=Os07t0620400-01;KEGG=Os07t0620400-01
Chr07	irgsp1_rep	five_prime_UTR	25649045	25649158	.	-	.	Parent=Os07t0620400-01
Chr07	irgsp1_rep	five_prime_UTR	25648380	25648439	.	-	.	Parent=Os07t0620400-01
Chr07	irgsp1_rep	CDS	25648287	25648379	.	-	0	Parent=Os07t0620400-01
Chr07	irgsp1_rep	CDS	25647795	25647935	.	-	0	Parent=Os07t0620400-01
Chr07	irgsp1_rep	CDS	25647537	25647645	.	-	0	Parent=Os07t0620400-01
Chr07	irgsp1_rep	CDS	25647327	25647388	.	-	2	Parent=Os07t0620400-01
Chr07	irgsp1_rep	CDS	25646706	25646809	.	-	0	Parent=Os07t0620400-01
Chr07	irgsp1_rep	CDS	25646368	25646470	.	-	1	Parent=Os07t0620400-01
Chr07	irgsp1_rep	three_prime_UTR	25645996	25646367	.	-	.	Parent=Os07t0620400-01
Chr07	irgsp1_rep	mRNA	25649962	25651481	.	+	.	ID=Os07t0620500-01;Name=Os07t0620500-01;Locus_id=Os07g0620500;Note=Oligosaccaryltransferase domain containing protein.;Transcript_evidence=AK241938 (DDBJ%2C Best hit);ORF_evidence=B8B8M1 (UniProt);InterPro=Oligosaccaryltransferase (IPR018943);NIAS_FLcDNA=J075085L14;TENOR=Os07t0620500-01;KEGG=Os07t0620500-01
Chr07	irgsp1_rep	five_prime_UTR	25649962	25651188	.	+	.	Parent=Os07t0620500-01
Chr07	irgsp1_rep	CDS	25651189	25651347	.	+	0	Parent=Os07t0620500-01
Chr07	irgsp1_rep	three_prime_UTR	25651348	25651481	.	+	.	Parent=Os07t0620500-01
Chr07	irgsp1_rep	mRNA	25652012	25653741	.	+	.	ID=Os07t0620600-01;Name=Os07t0620600-01;Locus_id=Os07g0620600;Note=Conserved hypothetical protein.;Transcript_evidence=AK070250 (DDBJ%2C Best hit);ORF_evidence=B9FU99 (UniProt);NIAS_FLcDNA=J023041I23;Expression=AK070250;TENOR=Os07t0620600-01;KEGG=Os07t0620600-01
Chr07	irgsp1_rep	five_prime_UTR	25652012	25652448	.	+	.	Parent=Os07t0620600-01
Chr07	irgsp1_rep	CDS	25652449	25653693	.	+	0	Parent=Os07t0620600-01
Chr07	irgsp1_rep	three_prime_UTR	25653694	25653741	.	+	.	Parent=Os07t0620600-01
Chr07	irgsp1_rep	mRNA	25654852	25657631	.	-	.	ID=Os07t0620700-01;Name=Os07t0620700-01;Locus_id=Os07g0620700;Note=Conserved hypothetical protein.;Transcript_evidence=AK102743 (DDBJ%2C Best hit);ORF_evidence=NP_001176966.1 (RefSeq);NIAS_FLcDNA=J033106H13;TENOR=Os07t0620700-01
Chr07	irgsp1_rep	five_prime_UTR	25656946	25657631	.	-	.	Parent=Os07t0620700-01
Chr07	irgsp1_rep	CDS	25656541	25656945	.	-	0	Parent=Os07t0620700-01
Chr07	irgsp1_rep	three_prime_UTR	25654852	25656540	.	-	.	Parent=Os07t0620700-01
Chr07	irgsp1_rep	mRNA	25662908	25665316	.	-	.	ID=Os07t0620800-01;Name=Os07t0620800-01;Locus_id=Os07g0620800;CGSNL Gene Symbol=CYCD2%3B1;CGSNL Gene Name=D-TYPE CYCLIN 2%3B1;Oryzabase Gene Symbol Synonym(s)=CycD2%3B1%2C CYCD2-1%2C Orysa%3BCycD2%3B1%2C Orysa%3BCYCD2%3B1%2C Orysa%3BCycD2%3B2;Oryzabase Gene Name Synonym(s)=Cyclin-D2-1%2C cyclinD2%3B1;Note=Cyclin%2C A/B/D/E domain containing protein.;Transcript_evidence=AK063671 (DDBJ%2C Best hit);ORF_evidence=Q8LHA8 (UniProt);GO=Biological Process: regulation of cyclin-dependent protein kinase activity (GO:0000079),Biological Process: regulation of cell cycle (GO:0051726),Cellular Component: nucleus (GO:0005634),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin%2C C-terminal (IPR004367),Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763),Cyclin A/B/D/E (IPR014400);NIAS_FLcDNA=001-119-D07;Oryzabase=12360;Expression=AK063671;TENOR=Os07t0620800-01;KEGG=Os07t0620800-01
Chr07	irgsp1_rep	five_prime_UTR	25665012	25665316	.	-	.	Parent=Os07t0620800-01
Chr07	irgsp1_rep	CDS	25664700	25665011	.	-	0	Parent=Os07t0620800-01
Chr07	irgsp1_rep	CDS	25664315	25664401	.	-	0	Parent=Os07t0620800-01
Chr07	irgsp1_rep	CDS	25664113	25664211	.	-	0	Parent=Os07t0620800-01
Chr07	irgsp1_rep	CDS	25663820	25664021	.	-	0	Parent=Os07t0620800-01
Chr07	irgsp1_rep	CDS	25663586	25663710	.	-	2	Parent=Os07t0620800-01
Chr07	irgsp1_rep	CDS	25663250	25663495	.	-	0	Parent=Os07t0620800-01
Chr07	irgsp1_rep	three_prime_UTR	25662908	25663249	.	-	.	Parent=Os07t0620800-01
Chr07	irgsp1_rep	mRNA	25663904	25664844	.	+	.	ID=Os07t0620950-00;Name=Os07t0620950-00;Locus_id=Os07g0620950;Note=Hypothetical protein.;Transcript_evidence=BT086899 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0620950-00
Chr07	irgsp1_rep	five_prime_UTR	25663904	25664092	.	+	.	Parent=Os07t0620950-00
Chr07	irgsp1_rep	five_prime_UTR	25664283	25664287	.	+	.	Parent=Os07t0620950-00
Chr07	irgsp1_rep	CDS	25664288	25664362	.	+	0	Parent=Os07t0620950-00
Chr07	irgsp1_rep	CDS	25664660	25664844	.	+	0	Parent=Os07t0620950-00
Chr07	irgsp1_rep	mRNA	25672201	25674075	.	+	.	ID=Os07t0621100-00;Name=Os07t0621100-00;Locus_id=Os07g0621100;Oryzabase Gene Symbol Synonym(s)=PPR;Oryzabase Gene Name Synonym(s)=Pentatricopeptide repeat (PPR) protein;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK375016 (DDBJ);ORF_evidence=NP_001060305.2 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);Oryzabase=22516;TENOR=Os07t0621100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	25672201	25674075	.	+	0	Parent=Os07t0621100-00
Chr07	irgsp1_rep	mRNA	25675078	25676524	.	-	.	ID=Os07t0621201-01;Name=Os07t0621201-01;Locus_id=Os07g0621201;Note=Conserved hypothetical protein.;Transcript_evidence=AK241365 (DDBJ%2C Best hit);ORF_evidence=NP_001175301.1 (RefSeq);NIAS_FLcDNA=J065152G13;TENOR=Os07t0621201-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	25676346	25676524	.	-	.	Parent=Os07t0621201-01
Chr07	irgsp1_rep	CDS	25675806	25676345	.	-	0	Parent=Os07t0621201-01
Chr07	irgsp1_rep	three_prime_UTR	25675078	25675805	.	-	.	Parent=Os07t0621201-01
Chr07	irgsp1_rep	mRNA	25675518	25676741	.	-	.	ID=Os07t0621201-02;Name=Os07t0621201-02;Locus_id=Os07g0621201;Note=Conserved hypothetical protein.;Transcript_evidence=AK287610 (DDBJ%2C Best hit);ORF_evidence=B9FUA1 (UniProt);NIAS_FLcDNA=J065058M04;TENOR=Os07t0621201-02
Chr07	irgsp1_rep	five_prime_UTR	25676477	25676741	.	-	.	Parent=Os07t0621201-02
Chr07	irgsp1_rep	CDS	25675907	25676476	.	-	0	Parent=Os07t0621201-02
Chr07	irgsp1_rep	three_prime_UTR	25675518	25675906	.	-	.	Parent=Os07t0621201-02
Chr07	irgsp1_rep	mRNA	25677791	25679802	.	+	.	ID=Os07t0621300-01;Name=Os07t0621300-01;Locus_id=Os07g0621300;Note=Similar to FIP1.;Transcript_evidence=AK071567 (DDBJ%2C Best hit);ORF_evidence=B6SJ51 (UniProt);InterPro=GRAM (IPR004182);NIAS_FLcDNA=J023100G12;TENOR=Os07t0621300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	25677791	25677830	.	+	.	Parent=Os07t0621300-01
Chr07	irgsp1_rep	CDS	25677831	25677949	.	+	0	Parent=Os07t0621300-01
Chr07	irgsp1_rep	CDS	25678024	25678100	.	+	1	Parent=Os07t0621300-01
Chr07	irgsp1_rep	CDS	25678221	25678322	.	+	2	Parent=Os07t0621300-01
Chr07	irgsp1_rep	CDS	25678653	25678927	.	+	2	Parent=Os07t0621300-01
Chr07	irgsp1_rep	CDS	25679362	25679568	.	+	0	Parent=Os07t0621300-01
Chr07	irgsp1_rep	three_prime_UTR	25679569	25679802	.	+	.	Parent=Os07t0621300-01
Chr07	irgsp1_rep	mRNA	25677852	25679803	.	+	.	ID=Os07t0621300-02;Name=Os07t0621300-02;Locus_id=Os07g0621300;Note=Similar to FIP1.;Transcript_evidence=AK059824 (DDBJ%2C Best hit);ORF_evidence=B6SJ51 (UniProt);InterPro=GRAM (IPR004182);NIAS_FLcDNA=006-205-E06;TENOR=Os07t0621300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	25677852	25677949	.	+	0	Parent=Os07t0621300-02
Chr07	irgsp1_rep	CDS	25678018	25678100	.	+	1	Parent=Os07t0621300-02
Chr07	irgsp1_rep	CDS	25678221	25678322	.	+	2	Parent=Os07t0621300-02
Chr07	irgsp1_rep	CDS	25678653	25678927	.	+	2	Parent=Os07t0621300-02
Chr07	irgsp1_rep	CDS	25679362	25679568	.	+	0	Parent=Os07t0621300-02
Chr07	irgsp1_rep	three_prime_UTR	25679569	25679803	.	+	.	Parent=Os07t0621300-02
Chr07	irgsp1_rep	mRNA	25680593	25682333	.	-	.	ID=Os07t0621400-01;Name=Os07t0621400-01;Locus_id=Os07g0621400;Note=Similar to cDNA clone:002-132-C09%2C full insert sequence.;Transcript_evidence=AK059724 (DDBJ%2C Best hit);ORF_evidence=B7F0I0 (UniProt);NIAS_FLcDNA=006-201-A12;TENOR=Os07t0621400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	25681721	25682333	.	-	.	Parent=Os07t0621400-01
Chr07	irgsp1_rep	CDS	25681608	25681720	.	-	0	Parent=Os07t0621400-01
Chr07	irgsp1_rep	CDS	25681263	25681275	.	-	1	Parent=Os07t0621400-01
Chr07	irgsp1_rep	three_prime_UTR	25681196	25681262	.	-	.	Parent=Os07t0621400-01
Chr07	irgsp1_rep	three_prime_UTR	25680593	25680868	.	-	.	Parent=Os07t0621400-01
Chr07	irgsp1_rep	mRNA	25683470	25688015	.	-	.	ID=Os07t0621500-01;Name=Os07t0621500-01;Locus_id=Os07g0621500;Note=Similar to predicted protein.;Transcript_evidence=AK242789 (DDBJ%2C Best hit);ORF_evidence=Q7XI36 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: zinc ion binding (GO:0008270);InterPro=Helicase%2C C-terminal (IPR001650),Zinc finger%2C RING-type (IPR001841),Zinc finger%2C C6HC-type (IPR002867),Zinc finger%2C C2H2 (IPR007087),Helicase-associated domain (IPR007502),Domain of unknown function DUF1605 (IPR011709),Nucleotide-binding%2C alpha-beta plait (IPR012677),Zinc finger%2C RING-type%2C conserved site (IPR017907);NIAS_FLcDNA=J090057B20;TENOR=Os07t0621500-01;KEGG=Os07t0621500-01
Chr07	irgsp1_rep	five_prime_UTR	25688014	25688015	.	-	.	Parent=Os07t0621500-01
Chr07	irgsp1_rep	CDS	25685364	25688013	.	-	0	Parent=Os07t0621500-01
Chr07	irgsp1_rep	CDS	25683515	25684728	.	-	2	Parent=Os07t0621500-01
Chr07	irgsp1_rep	three_prime_UTR	25683470	25683514	.	-	.	Parent=Os07t0621500-01
Chr07	irgsp1_rep	mRNA	25691906	25692138	.	-	.	ID=Os07t0621600-00;Name=Os07t0621600-00;Locus_id=Os07g0621600;Note=Non-protein coding transcript.;Transcript_evidence=CT836128 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os07t0621600-00
Chr07	irgsp1_rep	exon	25691906	25692138	.	-	.	Parent=Os07t0621600-00
Chr07	irgsp1_rep	mRNA	25696895	25704080	.	-	.	ID=Os07t0621800-01;Name=Os07t0621800-01;Locus_id=Os07g0621800;Note=Alcohol dehydrogenase superfamily%2C zinc-containing protein.;Transcript_evidence=AK071704 (DDBJ%2C Best hit);ORF_evidence=B6TD57 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),Alcohol dehydrogenase%2C zinc-type%2C conserved site (IPR002328),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023114G08;Expression=AK071704;TENOR=Os07t0621800-01;KEGG=Os07t0621800-01 (EC:1.1.1.1%2C EC:1.1.1.284)
Chr07	irgsp1_rep	five_prime_UTR	25704035	25704080	.	-	.	Parent=Os07t0621800-01
Chr07	irgsp1_rep	CDS	25703989	25704034	.	-	0	Parent=Os07t0621800-01
Chr07	irgsp1_rep	CDS	25703766	25703899	.	-	2	Parent=Os07t0621800-01
Chr07	irgsp1_rep	CDS	25703567	25703607	.	-	0	Parent=Os07t0621800-01
Chr07	irgsp1_rep	CDS	25699973	25700298	.	-	1	Parent=Os07t0621800-01
Chr07	irgsp1_rep	CDS	25699149	25699231	.	-	2	Parent=Os07t0621800-01
Chr07	irgsp1_rep	CDS	25698697	25698772	.	-	0	Parent=Os07t0621800-01
Chr07	irgsp1_rep	CDS	25698076	25698239	.	-	2	Parent=Os07t0621800-01
Chr07	irgsp1_rep	CDS	25697588	25697749	.	-	0	Parent=Os07t0621800-01
Chr07	irgsp1_rep	CDS	25697049	25697189	.	-	0	Parent=Os07t0621800-01
Chr07	irgsp1_rep	three_prime_UTR	25696895	25697048	.	-	.	Parent=Os07t0621800-01
Chr07	irgsp1_rep	mRNA	25717837	25722009	.	+	.	ID=Os07t0622000-01;Name=Os07t0622000-01;Locus_id=Os07g0622000;RAP-DB Gene Symbol Synonym(s)=SAPK2%2C OsSAPK2;RAP-DB Gene Name Synonym(s)=STRESS/ABA-ACTIVATED PROTEIN KINASE 2%2C stress/ABA-activated protein kinase 2%2C Stress-Activated Protein Kinase 2;CGSNL Gene Symbol=SAPK2;CGSNL Gene Name=STRESS/ABA-ACTIVATED PROTEIN KINASE 2;Oryzabase Gene Symbol Synonym(s)=OsSAPK2;Oryzabase Gene Name Synonym(s)=stress/ABA-activated protein kinase 2%2C Stress-Activated Protein Kinase 2;Note=Serine/threonine protein kinase%2C Hyperosmotic stress response%2C Abscisic acid (ABA)-dependent gene regulation;Transcript_evidence=AB125303,AK070965;ORF_evidence=Q0D4J7;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine/threonine/dual specificity protein kinase%2C catalytic  domain (IPR002290),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J023068H23;Manual Curation=December 14%2C 2015;Literature_PMID=15084714,22071266;Oryzabase=9810;TENOR=Os07t0622000-01
Chr07	irgsp1_rep	five_prime_UTR	25717837	25718059	.	+	.	Parent=Os07t0622000-01
Chr07	irgsp1_rep	CDS	25718060	25718179	.	+	0	Parent=Os07t0622000-01
Chr07	irgsp1_rep	CDS	25719256	25719330	.	+	0	Parent=Os07t0622000-01
Chr07	irgsp1_rep	CDS	25720493	25720594	.	+	0	Parent=Os07t0622000-01
Chr07	irgsp1_rep	CDS	25720677	25720730	.	+	0	Parent=Os07t0622000-01
Chr07	irgsp1_rep	CDS	25720816	25720908	.	+	0	Parent=Os07t0622000-01
Chr07	irgsp1_rep	CDS	25720991	25721083	.	+	0	Parent=Os07t0622000-01
Chr07	irgsp1_rep	CDS	25721166	25721270	.	+	0	Parent=Os07t0622000-01
Chr07	irgsp1_rep	CDS	25721382	25721480	.	+	0	Parent=Os07t0622000-01
Chr07	irgsp1_rep	CDS	25721561	25721839	.	+	0	Parent=Os07t0622000-01
Chr07	irgsp1_rep	three_prime_UTR	25721840	25722009	.	+	.	Parent=Os07t0622000-01
Chr07	irgsp1_rep	mRNA	25722884	25725402	.	+	.	ID=Os07t0622100-01;Name=Os07t0622100-01;Locus_id=Os07g0622100;Oryzabase Gene Name Synonym(s)=Ribosomal protein S6e;Note=Similar to Ribosomal protein s6 RPS6-2.;Transcript_evidence=AK069465 (DDBJ%2C Best hit);ORF_evidence=A2YNT9 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S6e (IPR001377),Ribosomal protein S6%2C eukaryotic (IPR014401),Ribosomal protein S6e%2C conserved site (IPR018282);NIAS_FLcDNA=J023022D14;Oryzabase=17701;Expression=AK069465;TENOR=Os07t0622100-01;KEGG=Os07t0622100-01
Chr07	irgsp1_rep	five_prime_UTR	25722884	25722973	.	+	.	Parent=Os07t0622100-01
Chr07	irgsp1_rep	CDS	25722974	25722979	.	+	0	Parent=Os07t0622100-01
Chr07	irgsp1_rep	CDS	25723100	25723164	.	+	0	Parent=Os07t0622100-01
Chr07	irgsp1_rep	CDS	25724123	25724180	.	+	1	Parent=Os07t0622100-01
Chr07	irgsp1_rep	CDS	25724263	25724371	.	+	0	Parent=Os07t0622100-01
Chr07	irgsp1_rep	CDS	25724452	25724724	.	+	2	Parent=Os07t0622100-01
Chr07	irgsp1_rep	CDS	25724928	25725169	.	+	2	Parent=Os07t0622100-01
Chr07	irgsp1_rep	three_prime_UTR	25725170	25725402	.	+	.	Parent=Os07t0622100-01
Chr07	irgsp1_rep	mRNA	25726437	25730027	.	-	.	ID=Os07t0622200-01;Name=Os07t0622200-01;Locus_id=Os07g0622200;RAP-DB Gene Symbol Synonym(s)=OsDAHP1%2C DAHP1%2C DAHPS%2C OsDAHPS2%2C DAHPS2;RAP-DB Gene Name Synonym(s)=phospho-2-dehydro-3-deoxyheptonate aldolase%2C 3-deoxy-D-arabinoheptulosonate 7-phosphate synthase%2C 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2;CGSNL Gene Symbol=DNRL1;CGSNL Gene Name=DYNAMIC NARROW-ROLLED LEAF 1;Oryzabase Gene Symbol Synonym(s)=OsDAHP1%2C DAHP1%2C DAHPS%2C OsDAHPS2%2C DAHPS2%2C OsDNRL1;Oryzabase Gene Name Synonym(s)=phospho-2-dehydro-3-deoxyheptonate aldolase%2C 3-deoxy-D-arabinoheptulosonate 7-phosphate synthase%2C 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2%2C Dynamic Narrow-Rolled Leaf 1%2C 3-deoxy-7-phosphoheptulonate synthase 1%2C Phospho-2-dehydro-3-deoxyheptonate aldolase 2;Note=3-Deoxy-D-arabino-heptulosonate 7-phosphate synthase%2C Chorismate biosynthesis;Transcript_evidence=AK105687,AK069968,AB122058 (Fujiminori%2C two 3bp insertion);ORF_evidence=Q75W16;GO=Biological Process: aromatic amino acid family biosynthetic process (GO:0009073),Molecular Function: 3-deoxy-7-phosphoheptulonate synthase activity (GO:0003849);InterPro=DAHP synthetase%2C class II (IPR002480);NIAS_FLcDNA=001-201-B12, J023038D13;Manual Curation=April 8%2C 2016;Literature_PMID=16496151;Oryzabase=15294;TENOR=Os07t0622200-01
Chr07	irgsp1_rep	five_prime_UTR	25729959	25730027	.	-	.	Parent=Os07t0622200-01
Chr07	irgsp1_rep	CDS	25729425	25729958	.	-	0	Parent=Os07t0622200-01
Chr07	irgsp1_rep	CDS	25729054	25729331	.	-	0	Parent=Os07t0622200-01
Chr07	irgsp1_rep	CDS	25727769	25728045	.	-	1	Parent=Os07t0622200-01
Chr07	irgsp1_rep	CDS	25727417	25727662	.	-	0	Parent=Os07t0622200-01
Chr07	irgsp1_rep	CDS	25726720	25726998	.	-	0	Parent=Os07t0622200-01
Chr07	irgsp1_rep	three_prime_UTR	25726437	25726719	.	-	.	Parent=Os07t0622200-01
Chr07	irgsp1_rep	mRNA	25726772	25729796	.	+	.	ID=Os07t0622250-00;Name=Os07t0622250-00;Locus_id=Os07g0622250;Note=Hypothetical protein.;Transcript_evidence=tplb0022g15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0622250-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	25726772	25727000	.	+	.	Parent=Os07t0622250-00
Chr07	irgsp1_rep	five_prime_UTR	25727420	25727676	.	+	.	Parent=Os07t0622250-00
Chr07	irgsp1_rep	five_prime_UTR	25727781	25728048	.	+	.	Parent=Os07t0622250-00
Chr07	irgsp1_rep	five_prime_UTR	25729057	25729328	.	+	.	Parent=Os07t0622250-00
Chr07	irgsp1_rep	five_prime_UTR	25729422	25729452	.	+	.	Parent=Os07t0622250-00
Chr07	irgsp1_rep	CDS	25729453	25729796	.	+	0	Parent=Os07t0622250-00
Chr07	irgsp1_rep	mRNA	25742767	25743805	.	-	.	ID=Os07t0622400-01;Name=Os07t0622400-01;Locus_id=Os07g0622400;Note=Hypothetical protein.;Transcript_evidence=AK108114 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-139-C03;TENOR=Os07t0622400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	25743804	25743805	.	-	.	Parent=Os07t0622400-01
Chr07	irgsp1_rep	CDS	25743288	25743803	.	-	0	Parent=Os07t0622400-01
Chr07	irgsp1_rep	three_prime_UTR	25742767	25743287	.	-	.	Parent=Os07t0622400-01
Chr07	irgsp1_rep	mRNA	25753347	25760619	.	-	.	ID=Os07t0622700-01;Name=Os07t0622700-01;Locus_id=Os07g0622700;Note=Alpha/beta hydrolase fold-1 domain containing protein.;Transcript_evidence=AK107120 (DDBJ%2C Best hit);ORF_evidence=B6SWJ5 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Alpha/beta hydrolase fold-1 (IPR000073),Epoxide hydrolase-like (IPR000639);NIAS_FLcDNA=002-124-B04;Expression=AK107120;TENOR=Os07t0622700-01;KEGG=Os07t0622700-01
Chr07	irgsp1_rep	five_prime_UTR	25760483	25760619	.	-	.	Parent=Os07t0622700-01
Chr07	irgsp1_rep	CDS	25759805	25760482	.	-	0	Parent=Os07t0622700-01
Chr07	irgsp1_rep	CDS	25754383	25754475	.	-	0	Parent=Os07t0622700-01
Chr07	irgsp1_rep	CDS	25754235	25754302	.	-	0	Parent=Os07t0622700-01
Chr07	irgsp1_rep	CDS	25753990	25754128	.	-	1	Parent=Os07t0622700-01
Chr07	irgsp1_rep	CDS	25753735	25753740	.	-	0	Parent=Os07t0622700-01
Chr07	irgsp1_rep	three_prime_UTR	25753347	25753734	.	-	.	Parent=Os07t0622700-01
Chr07	irgsp1_rep	mRNA	25761787	25765665	.	-	.	ID=Os07t0622900-01;Name=Os07t0622900-01;Locus_id=Os07g0622900;RAP-DB Gene Symbol Synonym(s)=DTM1;RAP-DB Gene Name Synonym(s)=DEFECTIVE TAPETUM AND MEIOCYTES 1;CGSNL Gene Symbol=DTM1;CGSNL Gene Name=DEFECTIVE TAPETUM AND MEIOCYTES 1;Oryzabase Gene Symbol Synonym(s)=OsDTM1;Note=Endoplasmic reticulum (ER) membrane protein%2C Early tapetum development and meiosis;Transcript_evidence=AK059960;ORF_evidence=Q7XI45;GO=Biological Process: signal peptide processing (GO:0006465),Molecular Function: peptidase activity (GO:0008233),Cellular Component: signal peptidase complex (GO:0005787),Cellular Component: integral component of membrane (GO:0016021);InterPro=Microsomal signal peptidase 12kDa subunit (IPR009542);NIAS_FLcDNA=006-211-F03;Manual Curation=March 12%2C 2015;Literature_PMID=22111585;Oryzabase=22578;Expression=AK059960
Chr07	irgsp1_rep	five_prime_UTR	25765413	25765665	.	-	.	Parent=Os07t0622900-01
Chr07	irgsp1_rep	CDS	25765162	25765412	.	-	0	Parent=Os07t0622900-01
Chr07	irgsp1_rep	CDS	25762197	25762284	.	-	1	Parent=Os07t0622900-01
Chr07	irgsp1_rep	three_prime_UTR	25761787	25762196	.	-	.	Parent=Os07t0622900-01
Chr07	irgsp1_rep	mRNA	25774523	25775231	.	-	.	ID=Os07t0623000-01;Name=Os07t0623000-01;Locus_id=Os07g0623000;Note=Protein of unknown function DUF343 family protein.;Transcript_evidence=AK063693 (DDBJ%2C Best hit);ORF_evidence=A2YNU3 (UniProt);InterPro=Uncharacterised protein family UPF0434/Trm112 (IPR005651);NIAS_FLcDNA=001-119-F11;Expression=AK063693;TENOR=Os07t0623000-01;KEGG=Os07t0623000-01
Chr07	irgsp1_rep	five_prime_UTR	25775119	25775231	.	-	.	Parent=Os07t0623000-01
Chr07	irgsp1_rep	CDS	25774717	25775118	.	-	0	Parent=Os07t0623000-01
Chr07	irgsp1_rep	three_prime_UTR	25774523	25774716	.	-	.	Parent=Os07t0623000-01
Chr07	irgsp1_rep	mRNA	25776199	25777874	.	-	.	ID=Os07t0623100-01;Name=Os07t0623100-01;Locus_id=Os07g0623100;Oryzabase Gene Name Synonym(s)=CaM-binding transcription factor homolog%2C OsCBT homolog%2C CBT homolog;Note=Similar to ER66 protein (Fragment).;Transcript_evidence=AK108461 (DDBJ%2C Best hit);ORF_evidence=Q10KD2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);NIAS_FLcDNA=002-143-D08;Oryzabase=19603;Expression=AK108461;TENOR=Os07t0623100-01;KEGG=Os07t0623100-01
Chr07	irgsp1_rep	five_prime_UTR	25777873	25777874	.	-	.	Parent=Os07t0623100-01
Chr07	irgsp1_rep	CDS	25777504	25777872	.	-	0	Parent=Os07t0623100-01
Chr07	irgsp1_rep	CDS	25776552	25776908	.	-	0	Parent=Os07t0623100-01
Chr07	irgsp1_rep	CDS	25776337	25776456	.	-	0	Parent=Os07t0623100-01
Chr07	irgsp1_rep	three_prime_UTR	25776199	25776336	.	-	.	Parent=Os07t0623100-01
Chr07	irgsp1_rep	mRNA	25790391	25792698	.	+	.	ID=Os07t0623200-01;Name=Os07t0623200-01;Locus_id=Os07g0623200;RAP-DB Gene Symbol Synonym(s)=OsHMA7;Oryzabase Gene Name Synonym(s)=Heavy metal ion transport%2C Heavy metal ion transporter;Note=Heavy metal transporter protein%2C Regulation of yield and grain Fe-Zn content;Transcript_evidence=AK069142;ORF_evidence=Q7XI43;GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain superfamily (IPR036163),Heavy metal-associated domain%2C HMA (IPR006121),Heavy-metal-associated%2C conserved site (IPR017969);NIAS_FLcDNA=J023008N22;Manual Curation=January 4%2C 2019;Literature_PMID=30348320;Oryzabase=12120;Expression=AK069142;TENOR=Os07t0623200-01;KEGG=Os07t0623200-01
Chr07	irgsp1_rep	five_prime_UTR	25790391	25790510	.	+	.	Parent=Os07t0623200-01
Chr07	irgsp1_rep	CDS	25790511	25790786	.	+	0	Parent=Os07t0623200-01
Chr07	irgsp1_rep	CDS	25790856	25790909	.	+	0	Parent=Os07t0623200-01
Chr07	irgsp1_rep	CDS	25791616	25791769	.	+	0	Parent=Os07t0623200-01
Chr07	irgsp1_rep	CDS	25792227	25792231	.	+	2	Parent=Os07t0623200-01
Chr07	irgsp1_rep	three_prime_UTR	25792232	25792698	.	+	.	Parent=Os07t0623200-01
Chr07	irgsp1_rep	mRNA	25790418	25792526	.	+	.	ID=Os07t0623200-02;Name=Os07t0623200-02;Locus_id=Os07g0623200;Oryzabase Gene Name Synonym(s)=Heavy metal ion transport%2C Heavy metal ion transporter;Note=ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter domain containing protein.;Transcript_evidence=AK058506 (DDBJ%2C Best hit);ORF_evidence=NP_001150997.1 (RefSeq);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121),Heavy-metal-associated%2C conserved site (IPR017969);NIAS_FLcDNA=001-016-G01;Oryzabase=12120;Expression=AK058506;TENOR=Os07t0623200-02;KEGG=Os07t0623200-02
Chr07	irgsp1_rep	five_prime_UTR	25790418	25790510	.	+	.	Parent=Os07t0623200-02
Chr07	irgsp1_rep	CDS	25790511	25790786	.	+	0	Parent=Os07t0623200-02
Chr07	irgsp1_rep	CDS	25790856	25790909	.	+	0	Parent=Os07t0623200-02
Chr07	irgsp1_rep	CDS	25791616	25791769	.	+	0	Parent=Os07t0623200-02
Chr07	irgsp1_rep	CDS	25792227	25792231	.	+	2	Parent=Os07t0623200-02
Chr07	irgsp1_rep	three_prime_UTR	25792232	25792526	.	+	.	Parent=Os07t0623200-02
Chr07	irgsp1_rep	mRNA	25790497	25792539	.	+	.	ID=Os07t0623200-03;Name=Os07t0623200-03;Locus_id=Os07g0623200;Oryzabase Gene Name Synonym(s)=Heavy metal ion transport%2C Heavy metal ion transporter;Note=ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter domain containing protein.;Transcript_evidence=AK103285 (DDBJ%2C Best hit);ORF_evidence=NP_001150997.1 (RefSeq);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121),Heavy-metal-associated%2C conserved site (IPR017969);NIAS_FLcDNA=J033124M20;Oryzabase=12120;Expression=AK103285;TENOR=Os07t0623200-03;KEGG=Os07t0623200-03
Chr07	irgsp1_rep	five_prime_UTR	25790497	25790510	.	+	.	Parent=Os07t0623200-03
Chr07	irgsp1_rep	CDS	25790511	25790786	.	+	0	Parent=Os07t0623200-03
Chr07	irgsp1_rep	CDS	25790856	25790909	.	+	0	Parent=Os07t0623200-03
Chr07	irgsp1_rep	CDS	25791616	25791769	.	+	0	Parent=Os07t0623200-03
Chr07	irgsp1_rep	CDS	25792227	25792231	.	+	2	Parent=Os07t0623200-03
Chr07	irgsp1_rep	three_prime_UTR	25792232	25792539	.	+	.	Parent=Os07t0623200-03
Chr07	irgsp1_rep	mRNA	25793520	25796646	.	+	.	ID=Os07t0623300-01;Name=Os07t0623300-01;Locus_id=Os07g0623300;CGSNL Gene Symbol=SC35B;Oryzabase Gene Symbol Synonym(s)=OsSC32%2C Os-SC32%2C SC32%2C OsSC35b%2C Os-SC35b;Oryzabase Gene Name Synonym(s)=SC subfamily protein 35b;Note=Similar to Splicing factor SC35.;Transcript_evidence=AK070292 (DDBJ%2C Best hit);ORF_evidence=NP_201225.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023050C05;Oryzabase=22739;Expression=AK070292;TENOR=Os07t0623300-01;KEGG=Os07t0623300-01
Chr07	irgsp1_rep	five_prime_UTR	25793520	25793630	.	+	.	Parent=Os07t0623300-01
Chr07	irgsp1_rep	CDS	25793631	25793706	.	+	0	Parent=Os07t0623300-01
Chr07	irgsp1_rep	CDS	25793815	25793893	.	+	2	Parent=Os07t0623300-01
Chr07	irgsp1_rep	CDS	25793993	25794072	.	+	1	Parent=Os07t0623300-01
Chr07	irgsp1_rep	CDS	25794168	25794234	.	+	2	Parent=Os07t0623300-01
Chr07	irgsp1_rep	CDS	25795128	25795199	.	+	1	Parent=Os07t0623300-01
Chr07	irgsp1_rep	CDS	25795651	25795803	.	+	1	Parent=Os07t0623300-01
Chr07	irgsp1_rep	CDS	25795889	25795972	.	+	1	Parent=Os07t0623300-01
Chr07	irgsp1_rep	CDS	25796054	25796270	.	+	1	Parent=Os07t0623300-01
Chr07	irgsp1_rep	three_prime_UTR	25796271	25796305	.	+	.	Parent=Os07t0623300-01
Chr07	irgsp1_rep	three_prime_UTR	25796391	25796646	.	+	.	Parent=Os07t0623300-01
Chr07	irgsp1_rep	mRNA	25797988	25800742	.	-	.	ID=Os07t0623400-00;Name=Os07t0623400-00;Locus_id=Os07g0623400;Note=Similar to transcription elongation factor SPT4.;Transcript_evidence=CT836149 (DDBJ%2C Best hit);ORF_evidence=NP_001150575.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: positive regulation of transcription elongation%2C DNA-dependent (GO:0032786),Cellular Component: nucleus (GO:0005634),Molecular Function: zinc ion binding (GO:0008270);InterPro=Transcription initiation Spt4 (IPR009287),Transcription initiation Spt4-like (IPR016046),Spt4/RpoE2 zinc finger (IPR022800);TENOR=Os07t0623400-00;KEGG=Os07t0623400-00
Chr07	irgsp1_rep	five_prime_UTR	25800716	25800742	.	-	.	Parent=Os07t0623400-00
Chr07	irgsp1_rep	CDS	25800581	25800715	.	-	0	Parent=Os07t0623400-00
Chr07	irgsp1_rep	CDS	25800192	25800283	.	-	0	Parent=Os07t0623400-00
Chr07	irgsp1_rep	CDS	25799564	25799619	.	-	1	Parent=Os07t0623400-00
Chr07	irgsp1_rep	CDS	25798344	25798405	.	-	2	Parent=Os07t0623400-00
Chr07	irgsp1_rep	CDS	25798198	25798248	.	-	0	Parent=Os07t0623400-00
Chr07	irgsp1_rep	three_prime_UTR	25797988	25798197	.	-	.	Parent=Os07t0623400-00
Chr07	irgsp1_rep	mRNA	25804590	25806647	.	+	.	ID=Os07t0623501-00;Name=Os07t0623501-00;Locus_id=Os07g0623501;Note=Hypothetical gene.;Transcript_evidence=BT068550 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0623501-00;KEGG=Os07t0623501-00
Chr07	irgsp1_rep	five_prime_UTR	25804590	25804669	.	+	.	Parent=Os07t0623501-00
Chr07	irgsp1_rep	CDS	25804670	25805038	.	+	0	Parent=Os07t0623501-00
Chr07	irgsp1_rep	three_prime_UTR	25805039	25805326	.	+	.	Parent=Os07t0623501-00
Chr07	irgsp1_rep	three_prime_UTR	25806500	25806647	.	+	.	Parent=Os07t0623501-00
Chr07	irgsp1_rep	mRNA	25804444	25807753	.	-	.	ID=Os07t0623600-01;Name=Os07t0623600-01;Locus_id=Os07g0623600;Note=Similar to mRNA%2C clone: RTFL01-43-H20.;Transcript_evidence=AK063642 (DDBJ%2C Best hit);ORF_evidence=E4MY59 (UniProt);NIAS_FLcDNA=001-118-G12;Expression=AK063642;TENOR=Os07t0623600-01;KEGG=Os07t0623600-01
Chr07	irgsp1_rep	five_prime_UTR	25807575	25807753	.	-	.	Parent=Os07t0623600-01
Chr07	irgsp1_rep	CDS	25807449	25807574	.	-	0	Parent=Os07t0623600-01
Chr07	irgsp1_rep	CDS	25807278	25807351	.	-	0	Parent=Os07t0623600-01
Chr07	irgsp1_rep	CDS	25806510	25806642	.	-	1	Parent=Os07t0623600-01
Chr07	irgsp1_rep	CDS	25805074	25805337	.	-	0	Parent=Os07t0623600-01
Chr07	irgsp1_rep	CDS	25804703	25804972	.	-	0	Parent=Os07t0623600-01
Chr07	irgsp1_rep	three_prime_UTR	25804444	25804702	.	-	.	Parent=Os07t0623600-01
Chr07	irgsp1_rep	mRNA	25839984	25842020	.	-	.	ID=Os07t0624100-00;Name=Os07t0624100-00;Locus_id=Os07g0624100;Note=Similar to cDNA clone:J033024N05%2C full insert sequence.;Transcript_evidence=AK059713 (DDBJ%2C Secondary hit);ORF_evidence=NP_001060325.2 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein dimerization activity (GO:0046983);InterPro=HAT dimerisation (IPR008906),Ribonuclease H-like (IPR012337);Expression=AK059713;TENOR=Os07t0624100-00;KEGG=Os07t0624100-00
Chr07	irgsp1_rep	five_prime_UTR	25842019	25842020	.	-	.	Parent=Os07t0624100-00
Chr07	irgsp1_rep	CDS	25841229	25842018	.	-	0	Parent=Os07t0624100-00
Chr07	irgsp1_rep	CDS	25841093	25841148	.	-	2	Parent=Os07t0624100-00
Chr07	irgsp1_rep	CDS	25840805	25840855	.	-	0	Parent=Os07t0624100-00
Chr07	irgsp1_rep	three_prime_UTR	25840775	25840804	.	-	.	Parent=Os07t0624100-00
Chr07	irgsp1_rep	three_prime_UTR	25839984	25840241	.	-	.	Parent=Os07t0624100-00
Chr07	irgsp1_rep	mRNA	25867212	25871232	.	+	.	ID=Os07t0624600-01;Name=Os07t0624600-01;Locus_id=Os07g0624600;CGSNL Gene Symbol=TPP3;CGSNL Gene Name=TREHALOSE-6-PHOSPHATE PHOSHPHATASE 3;Oryzabase Gene Symbol Synonym(s)=OsTPP3;Note=Similar to Trehalose-6-phosphate phosphatase.;Transcript_evidence=AK109902 (DDBJ%2C Best hit);ORF_evidence=NP_001105864.1 (RefSeq);GO=Biological Process: trehalose biosynthetic process (GO:0005992),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Trehalose-phosphatase (IPR003337),HAD-superfamily hydrolase%2C subfamily IIB (IPR006379),HAD-like domain (IPR023214);NIAS_FLcDNA=002-149-F10;Oryzabase=9978;Expression=AK109902;TENOR=Os07t0624600-01;KEGG=Os07t0624600-01
Chr07	irgsp1_rep	five_prime_UTR	25867212	25867349	.	+	.	Parent=Os07t0624600-01
Chr07	irgsp1_rep	CDS	25867350	25867586	.	+	0	Parent=Os07t0624600-01
Chr07	irgsp1_rep	CDS	25867727	25867867	.	+	0	Parent=Os07t0624600-01
Chr07	irgsp1_rep	CDS	25868045	25868116	.	+	0	Parent=Os07t0624600-01
Chr07	irgsp1_rep	CDS	25868602	25868715	.	+	0	Parent=Os07t0624600-01
Chr07	irgsp1_rep	CDS	25869011	25869064	.	+	0	Parent=Os07t0624600-01
Chr07	irgsp1_rep	CDS	25869224	25869325	.	+	0	Parent=Os07t0624600-01
Chr07	irgsp1_rep	CDS	25869410	25869487	.	+	0	Parent=Os07t0624600-01
Chr07	irgsp1_rep	CDS	25869693	25869762	.	+	0	Parent=Os07t0624600-01
Chr07	irgsp1_rep	CDS	25870157	25870227	.	+	2	Parent=Os07t0624600-01
Chr07	irgsp1_rep	CDS	25870344	25870436	.	+	0	Parent=Os07t0624600-01
Chr07	irgsp1_rep	CDS	25870886	25870954	.	+	0	Parent=Os07t0624600-01
Chr07	irgsp1_rep	three_prime_UTR	25870955	25871232	.	+	.	Parent=Os07t0624600-01
Chr07	irgsp1_rep	mRNA	25878568	25882402	.	-	.	ID=Os07t0624700-01;Name=Os07t0624700-01;Locus_id=Os07g0624700;Note=UMP/CMP kinase a (EC 2.7.1.48).;Transcript_evidence=AK072973 (DDBJ%2C Best hit);ORF_evidence=Q9SE48 (UniProt);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Biological Process: nucleotide phosphorylation (GO:0046939),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphotransferase activity%2C phosphate group as acceptor (GO:0016776),Molecular Function: nucleotide kinase activity (GO:0019201),Molecular Function: nucleobase-containing compound kinase activity (GO:0019205);InterPro=Adenylate kinase (IPR000850),UMP-CMP kinase (IPR006266);NIAS_FLcDNA=J023149K03;Expression=AK072973;TENOR=Os07t0624700-01;KEGG=Os07t0624700-01 (EC:2.7.1.48%2C EC:2.7.4.14)
Chr07	irgsp1_rep	five_prime_UTR	25882275	25882402	.	-	.	Parent=Os07t0624700-01
Chr07	irgsp1_rep	five_prime_UTR	25881395	25881419	.	-	.	Parent=Os07t0624700-01
Chr07	irgsp1_rep	CDS	25881359	25881394	.	-	0	Parent=Os07t0624700-01
Chr07	irgsp1_rep	CDS	25880865	25880919	.	-	0	Parent=Os07t0624700-01
Chr07	irgsp1_rep	CDS	25880640	25880757	.	-	2	Parent=Os07t0624700-01
Chr07	irgsp1_rep	CDS	25880375	25880531	.	-	1	Parent=Os07t0624700-01
Chr07	irgsp1_rep	CDS	25880135	25880215	.	-	0	Parent=Os07t0624700-01
Chr07	irgsp1_rep	CDS	25879946	25880053	.	-	0	Parent=Os07t0624700-01
Chr07	irgsp1_rep	CDS	25879751	25879819	.	-	0	Parent=Os07t0624700-01
Chr07	irgsp1_rep	CDS	25879539	25879547	.	-	0	Parent=Os07t0624700-01
Chr07	irgsp1_rep	three_prime_UTR	25879487	25879538	.	-	.	Parent=Os07t0624700-01
Chr07	irgsp1_rep	three_prime_UTR	25878568	25878777	.	-	.	Parent=Os07t0624700-01
Chr07	irgsp1_rep	mRNA	25884418	25885020	.	+	.	ID=Os07t0624900-00;Name=Os07t0624900-00;Locus_id=Os07g0624900;Oryzabase Gene Symbol Synonym(s)=OSK17;Oryzabase Gene Name Synonym(s)=S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 17%2C Oryza sativa SKP1-like gene 17;Note=SKP1.;Transcript_evidence=ab initio prediction;ORF_evidence=C3V9V9 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);InterPro=SKP1 component (IPR001232),BTB/POZ fold (IPR011333),SKP1 component%2C dimerisation (IPR016072),SKP1 component%2C POZ (IPR016073),E3 ubiquitin ligase%2C SCF complex%2C Skp subunit (IPR016897);Oryzabase=18448;TENOR=Os07t0624900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	25884418	25885020	.	+	0	Parent=Os07t0624900-00
Chr07	irgsp1_rep	mRNA	25904766	25905608	.	+	.	ID=Os07t0625400-01;Name=Os07t0625400-01;Locus_id=Os07g0625400;Oryzabase Gene Symbol Synonym(s)=OSK28;Oryzabase Gene Name Synonym(s)=S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 28%2C Oryza sativa SKP1-like gene 28;Note=SKP1 component domain containing protein.;Transcript_evidence=AK073278 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);InterPro=SKP1 component (IPR001232),BTB/POZ fold (IPR011333),SKP1 component%2C dimerisation (IPR016072),SKP1 component%2C POZ (IPR016073),E3 ubiquitin ligase%2C SCF complex%2C Skp subunit (IPR016897);NIAS_FLcDNA=J033025L08;Oryzabase=18290;TENOR=Os07t0625400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	25904766	25905383	.	+	0	Parent=Os07t0625400-01
Chr07	irgsp1_rep	three_prime_UTR	25905384	25905608	.	+	.	Parent=Os07t0625400-01
Chr07	irgsp1_rep	mRNA	25907654	25908496	.	+	.	ID=Os07t0625500-01;Name=Os07t0625500-01;Locus_id=Os07g0625500;Oryzabase Gene Symbol Synonym(s)=OSK22;Oryzabase Gene Name Synonym(s)=S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 22%2C Oryza sativa SKP1-like gene 22;Note=Similar to Fimbriata-associated protein (Fragment).;Transcript_evidence=AK064628 (DDBJ%2C Best hit);ORF_evidence=A2YNV7 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);InterPro=SKP1 component (IPR001232),BTB/POZ fold (IPR011333),SKP1 component%2C dimerisation (IPR016072),SKP1 component%2C POZ (IPR016073),E3 ubiquitin ligase%2C SCF complex%2C Skp subunit (IPR016897);NIAS_FLcDNA=002-113-F08;Oryzabase=18450;Expression=AK064628;TENOR=Os07t0625500-01;KEGG=Os07t0625500-01
Chr07	irgsp1_rep	five_prime_UTR	25907654	25907750	.	+	.	Parent=Os07t0625500-01
Chr07	irgsp1_rep	CDS	25907751	25908275	.	+	0	Parent=Os07t0625500-01
Chr07	irgsp1_rep	three_prime_UTR	25908276	25908496	.	+	.	Parent=Os07t0625500-01
Chr07	irgsp1_rep	mRNA	25914762	25915298	.	+	.	ID=Os07t0625600-00;Name=Os07t0625600-00;Locus_id=Os07g0625600;Oryzabase Gene Symbol Synonym(s)=OSK19;Oryzabase Gene Name Synonym(s)=S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 19%2C Oryza sativa SKP1-like gene 19;Note=Fimbriata-associated protein (Fragment).;Transcript_evidence=ab initio prediction;ORF_evidence=Q8LI45 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);InterPro=SKP1 component (IPR001232),BTB/POZ fold (IPR011333),SKP1 component%2C dimerisation (IPR016072),SKP1 component%2C POZ (IPR016073),E3 ubiquitin ligase%2C SCF complex%2C Skp subunit (IPR016897);Oryzabase=18288;TENOR=Os07t0625600-00;KEGG=Os07t0625600-00
Chr07	irgsp1_rep	CDS	25914762	25915298	.	+	0	Parent=Os07t0625600-00
Chr07	irgsp1_rep	mRNA	25920699	25922871	.	-	.	ID=Os07t0625800-01;Name=Os07t0625800-01;Locus_id=Os07g0625800;Oryzabase Gene Symbol Synonym(s)=OsLLA7%2C OsLTPG21%2C OsLTPg21%2C LLA7%2C LTPG21%2C LTPg21%2C OsHyPRP25%2C HyPRP25;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein-like AGP 7%2C non-specific lipid transfer protein-like arabinogalactan protein 7%2C GPI-anchored non-specific lipid transfer protein 21%2C type G nsLTP 21%2C type G non-specific lipid transfer protein 21%2C Hybrid Proline-Rich Protein 25;Note=Plant lipid transfer protein/Par allergen family protein.;Transcript_evidence=AK103419 (DDBJ%2C Best hit);ORF_evidence=A2YNW1 (UniProt);GO=Biological Process: lipid transport (GO:0006869),Molecular Function: lipid binding (GO:0008289);InterPro=Plant lipid transfer protein/Par allergen (IPR000528),Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=J033128J19;Oryzabase=11334;TENOR=Os07t0625800-01
Chr07	irgsp1_rep	five_prime_UTR	25922660	25922871	.	-	.	Parent=Os07t0625800-01
Chr07	irgsp1_rep	CDS	25922311	25922659	.	-	0	Parent=Os07t0625800-01
Chr07	irgsp1_rep	CDS	25921835	25921864	.	-	2	Parent=Os07t0625800-01
Chr07	irgsp1_rep	CDS	25920909	25921063	.	-	2	Parent=Os07t0625800-01
Chr07	irgsp1_rep	three_prime_UTR	25920699	25920908	.	-	.	Parent=Os07t0625800-01
Chr07	irgsp1_rep	mRNA	25920699	25922741	.	-	.	ID=Os07t0625800-02;Name=Os07t0625800-02;Locus_id=Os07g0625800;Oryzabase Gene Symbol Synonym(s)=OsLLA7%2C OsLTPG21%2C OsLTPg21%2C LLA7%2C LTPG21%2C LTPg21%2C OsHyPRP25%2C HyPRP25;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein-like AGP 7%2C non-specific lipid transfer protein-like arabinogalactan protein 7%2C GPI-anchored non-specific lipid transfer protein 21%2C type G nsLTP 21%2C type G non-specific lipid transfer protein 21%2C Hybrid Proline-Rich Protein 25;Note=Plant lipid transfer protein/Par allergen family protein.;Transcript_evidence=AK073694 (DDBJ%2C Best hit);ORF_evidence=A2YNW1 (UniProt);GO=Biological Process: lipid transport (GO:0006869),Molecular Function: lipid binding (GO:0008289);InterPro=Plant lipid transfer protein/Par allergen (IPR000528),Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=J033060N23;Oryzabase=11334;TENOR=Os07t0625800-02
Chr07	irgsp1_rep	five_prime_UTR	25922660	25922741	.	-	.	Parent=Os07t0625800-02
Chr07	irgsp1_rep	CDS	25922311	25922659	.	-	0	Parent=Os07t0625800-02
Chr07	irgsp1_rep	CDS	25921835	25921864	.	-	2	Parent=Os07t0625800-02
Chr07	irgsp1_rep	CDS	25920909	25921063	.	-	2	Parent=Os07t0625800-02
Chr07	irgsp1_rep	three_prime_UTR	25920699	25920908	.	-	.	Parent=Os07t0625800-02
Chr07	irgsp1_rep	mRNA	25930459	25931321	.	-	.	ID=Os07t0626100-01;Name=Os07t0626100-01;Locus_id=Os07g0626100;Note=Similar to 50S ribosomal protein L7/L12.;Transcript_evidence=AK062899 (DDBJ%2C Best hit);ORF_evidence=NP_001149831.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L7/L12%2C C-terminal (IPR013823),Ribosomal protein L7/L12%2C C-terminal/adaptor protein ClpS-like (IPR014719),Ribosomal protein L7/L12%2C chloroplast (IPR015608);NIAS_FLcDNA=001-108-F02;Expression=AK062899;TENOR=Os07t0626100-01;KEGG=Os07t0626100-01
Chr07	irgsp1_rep	five_prime_UTR	25931319	25931321	.	-	.	Parent=Os07t0626100-01
Chr07	irgsp1_rep	CDS	25930815	25931318	.	-	0	Parent=Os07t0626100-01
Chr07	irgsp1_rep	three_prime_UTR	25930459	25930814	.	-	.	Parent=Os07t0626100-01
Chr07	irgsp1_rep	mRNA	25931608	25936487	.	+	.	ID=Os07t0626200-01;Name=Os07t0626200-01;Locus_id=Os07g0626200;Note=DNA-binding SAP domain containing protein.;Transcript_evidence=AK069686 (DDBJ%2C Best hit);ORF_evidence=B9FUB8 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=DNA-binding SAP (IPR003034);NIAS_FLcDNA=J023033G21;Expression=AK069686;TENOR=Os07t0626200-01;KEGG=Os07t0626200-01
Chr07	irgsp1_rep	five_prime_UTR	25931608	25932045	.	+	.	Parent=Os07t0626200-01
Chr07	irgsp1_rep	five_prime_UTR	25932821	25932825	.	+	.	Parent=Os07t0626200-01
Chr07	irgsp1_rep	CDS	25932826	25933381	.	+	0	Parent=Os07t0626200-01
Chr07	irgsp1_rep	CDS	25933724	25934734	.	+	2	Parent=Os07t0626200-01
Chr07	irgsp1_rep	CDS	25935082	25935276	.	+	2	Parent=Os07t0626200-01
Chr07	irgsp1_rep	CDS	25935357	25935508	.	+	2	Parent=Os07t0626200-01
Chr07	irgsp1_rep	CDS	25935727	25936191	.	+	0	Parent=Os07t0626200-01
Chr07	irgsp1_rep	three_prime_UTR	25936192	25936487	.	+	.	Parent=Os07t0626200-01
Chr07	irgsp1_rep	mRNA	25933048	25936474	.	+	.	ID=Os07t0626200-02;Name=Os07t0626200-02;Locus_id=Os07g0626200;Note=Hypothetical conserved gene.;Transcript_evidence=AK063443 (DDBJ%2C Best hit);ORF_evidence=B9FUB8 (UniProt);NIAS_FLcDNA=001-115-F03;Expression=AK063443;TENOR=Os07t0626200-02;KEGG=Os07t0626200-02
Chr07	irgsp1_rep	CDS	25933048	25934734	.	+	0	Parent=Os07t0626200-02
Chr07	irgsp1_rep	CDS	25935082	25935299	.	+	2	Parent=Os07t0626200-02
Chr07	irgsp1_rep	three_prime_UTR	25935300	25935508	.	+	.	Parent=Os07t0626200-02
Chr07	irgsp1_rep	three_prime_UTR	25935727	25936474	.	+	.	Parent=Os07t0626200-02
Chr07	irgsp1_rep	mRNA	25936946	25940377	.	+	.	ID=Os07t0626300-01;Name=Os07t0626300-01;Locus_id=Os07g0626300;Note=UV radiation resistance protein/autophagy-related protein 14 domain containing protein.;Transcript_evidence=AK100052 (DDBJ%2C Best hit);ORF_evidence=B9FUB9 (UniProt);GO=Biological Process: positive regulation of autophagy (GO:0010508);InterPro=UV radiation resistance protein/autophagy-related protein 14 (IPR018791);NIAS_FLcDNA=J013157E21;Expression=AK100052;TENOR=Os07t0626300-01;KEGG=Os07t0626300-01
Chr07	irgsp1_rep	five_prime_UTR	25936946	25937086	.	+	.	Parent=Os07t0626300-01
Chr07	irgsp1_rep	CDS	25937087	25937190	.	+	0	Parent=Os07t0626300-01
Chr07	irgsp1_rep	CDS	25937303	25937390	.	+	1	Parent=Os07t0626300-01
Chr07	irgsp1_rep	CDS	25937686	25937785	.	+	0	Parent=Os07t0626300-01
Chr07	irgsp1_rep	CDS	25937868	25937941	.	+	2	Parent=Os07t0626300-01
Chr07	irgsp1_rep	CDS	25938036	25938104	.	+	0	Parent=Os07t0626300-01
Chr07	irgsp1_rep	CDS	25938227	25938304	.	+	0	Parent=Os07t0626300-01
Chr07	irgsp1_rep	CDS	25938526	25938650	.	+	0	Parent=Os07t0626300-01
Chr07	irgsp1_rep	CDS	25938748	25938820	.	+	1	Parent=Os07t0626300-01
Chr07	irgsp1_rep	CDS	25939088	25939146	.	+	0	Parent=Os07t0626300-01
Chr07	irgsp1_rep	CDS	25939230	25939607	.	+	1	Parent=Os07t0626300-01
Chr07	irgsp1_rep	CDS	25939714	25939816	.	+	1	Parent=Os07t0626300-01
Chr07	irgsp1_rep	CDS	25939917	25939964	.	+	0	Parent=Os07t0626300-01
Chr07	irgsp1_rep	three_prime_UTR	25939965	25940377	.	+	.	Parent=Os07t0626300-01
Chr07	irgsp1_rep	mRNA	25937684	25940365	.	+	.	ID=Os07t0626300-02;Name=Os07t0626300-02;Locus_id=Os07g0626300;Note=Similar to predicted protein.;Transcript_evidence=AK105003 (DDBJ%2C Best hit),AK060844 (DDBJ%2C Best hit);ORF_evidence=B9FUB9 (UniProt);GO=Biological Process: positive regulation of autophagy (GO:0010508);InterPro=UV radiation resistance protein/autophagy-related protein 14 (IPR018791);NIAS_FLcDNA=001-006-B01,001-034-D11;Expression=AK105003;TENOR=Os07t0626300-02;KEGG=Os07t0626300-02
Chr07	irgsp1_rep	five_prime_UTR	25937684	25937685	.	+	.	Parent=Os07t0626300-02
Chr07	irgsp1_rep	CDS	25937686	25937785	.	+	0	Parent=Os07t0626300-02
Chr07	irgsp1_rep	CDS	25937868	25937941	.	+	2	Parent=Os07t0626300-02
Chr07	irgsp1_rep	CDS	25938036	25938104	.	+	0	Parent=Os07t0626300-02
Chr07	irgsp1_rep	CDS	25938227	25938304	.	+	0	Parent=Os07t0626300-02
Chr07	irgsp1_rep	CDS	25938526	25938650	.	+	0	Parent=Os07t0626300-02
Chr07	irgsp1_rep	CDS	25938748	25938820	.	+	1	Parent=Os07t0626300-02
Chr07	irgsp1_rep	CDS	25939088	25939146	.	+	0	Parent=Os07t0626300-02
Chr07	irgsp1_rep	CDS	25939230	25939607	.	+	1	Parent=Os07t0626300-02
Chr07	irgsp1_rep	CDS	25939714	25939816	.	+	1	Parent=Os07t0626300-02
Chr07	irgsp1_rep	CDS	25939912	25940124	.	+	0	Parent=Os07t0626300-02
Chr07	irgsp1_rep	three_prime_UTR	25940125	25940365	.	+	.	Parent=Os07t0626300-02
Chr07	irgsp1_rep	mRNA	25940647	25943166	.	+	.	ID=Os07t0626400-01;Name=Os07t0626400-01;Locus_id=Os07g0626400;Oryzabase Gene Symbol Synonym(s)=OsDjC60;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C60%2C rice DJC65 homolog;Note=Similar to Chaperone protein dnaJ.;Transcript_evidence=AK100600 (DDBJ%2C Best hit);ORF_evidence=NP_565163.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=J023107C09;Oryzabase=12217;Expression=AK100600;TENOR=Os07t0626400-01;KEGG=Os07t0626400-01
Chr07	irgsp1_rep	five_prime_UTR	25940647	25940714	.	+	.	Parent=Os07t0626400-01
Chr07	irgsp1_rep	CDS	25940715	25940952	.	+	0	Parent=Os07t0626400-01
Chr07	irgsp1_rep	CDS	25941304	25941378	.	+	2	Parent=Os07t0626400-01
Chr07	irgsp1_rep	CDS	25941968	25942107	.	+	2	Parent=Os07t0626400-01
Chr07	irgsp1_rep	CDS	25942260	25942397	.	+	0	Parent=Os07t0626400-01
Chr07	irgsp1_rep	CDS	25942478	25942699	.	+	0	Parent=Os07t0626400-01
Chr07	irgsp1_rep	three_prime_UTR	25942700	25943166	.	+	.	Parent=Os07t0626400-01
Chr07	irgsp1_rep	mRNA	25945994	25947286	.	+	.	ID=Os07t0626466-00;Name=Os07t0626466-00;Locus_id=Os07g0626466;Note=Non-protein coding transcript.;Transcript_evidence=BT017590 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0626466-00
Chr07	irgsp1_rep	exon	25945994	25946708	.	+	.	Parent=Os07t0626466-00
Chr07	irgsp1_rep	exon	25946918	25947286	.	+	.	Parent=Os07t0626466-00
Chr07	irgsp1_rep	mRNA	25945981	25950562	.	-	.	ID=Os07t0626500-01;Name=Os07t0626500-01;Locus_id=Os07g0626500;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK103267 (DDBJ%2C Best hit);ORF_evidence=B9FUC1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033124G23;Expression=AK103267;TENOR=Os07t0626500-01;KEGG=Os07t0626500-01
Chr07	irgsp1_rep	five_prime_UTR	25950326	25950562	.	-	.	Parent=Os07t0626500-01
Chr07	irgsp1_rep	CDS	25949398	25950325	.	-	0	Parent=Os07t0626500-01
Chr07	irgsp1_rep	CDS	25946922	25948592	.	-	2	Parent=Os07t0626500-01
Chr07	irgsp1_rep	CDS	25946135	25946715	.	-	2	Parent=Os07t0626500-01
Chr07	irgsp1_rep	three_prime_UTR	25945981	25946134	.	-	.	Parent=Os07t0626500-01
Chr07	irgsp1_rep	mRNA	25945957	25946384	.	-	.	ID=Os07t0626500-02;Name=Os07t0626500-02;Locus_id=Os07g0626500;Note=Similar to predicted protein.;Transcript_evidence=AK059532 (DDBJ%2C Best hit);ORF_evidence=Q4AC13 (UniProt);NIAS_FLcDNA=001-029-D09;Expression=AK059532;TENOR=Os07t0626500-02;KEGG=Os07t0626500-02
Chr07	irgsp1_rep	five_prime_UTR	25946384	25946384	.	-	.	Parent=Os07t0626500-02
Chr07	irgsp1_rep	CDS	25946135	25946383	.	-	0	Parent=Os07t0626500-02
Chr07	irgsp1_rep	three_prime_UTR	25945957	25946134	.	-	.	Parent=Os07t0626500-02
Chr07	irgsp1_rep	mRNA	25958866	25963652	.	-	.	ID=Os07t0626600-01;Name=Os07t0626600-01;Locus_id=Os07g0626600;CGSNL Gene Symbol=HAM701;CGSNL Gene Name=HISTONE ACETYLTRANSFERASE HAM701;Oryzabase Gene Symbol Synonym(s)=OsHAM701%2C OsMOF%2C MOF;Oryzabase Gene Name Synonym(s)=Histone acetyltransferase HAM701%2C Males-absent-on-the-first;Note=Similar to Embryogenic callus protein-like.;Transcript_evidence=AK288055 (DDBJ%2C Best hit);ORF_evidence=NP_001105074.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Chromo domain/shadow (IPR000953),MOZ/SAS-like protein (IPR002717),Acyl-CoA N-acyltransferase (IPR016181),Chromo domain-like (IPR016197);NIAS_FLcDNA=J075152G12;Oryzabase=11174;TENOR=Os07t0626600-01;KEGG=Os07t0626600-01 (EC:2.3.1.48)
Chr07	irgsp1_rep	five_prime_UTR	25963644	25963652	.	-	.	Parent=Os07t0626600-01
Chr07	irgsp1_rep	CDS	25963325	25963643	.	-	0	Parent=Os07t0626600-01
Chr07	irgsp1_rep	CDS	25962874	25962962	.	-	2	Parent=Os07t0626600-01
Chr07	irgsp1_rep	CDS	25962634	25962693	.	-	0	Parent=Os07t0626600-01
Chr07	irgsp1_rep	CDS	25962211	25962423	.	-	0	Parent=Os07t0626600-01
Chr07	irgsp1_rep	CDS	25961464	25961532	.	-	0	Parent=Os07t0626600-01
Chr07	irgsp1_rep	CDS	25961106	25961267	.	-	0	Parent=Os07t0626600-01
Chr07	irgsp1_rep	CDS	25960853	25960946	.	-	0	Parent=Os07t0626600-01
Chr07	irgsp1_rep	CDS	25960605	25960747	.	-	2	Parent=Os07t0626600-01
Chr07	irgsp1_rep	CDS	25959055	25959258	.	-	0	Parent=Os07t0626600-01
Chr07	irgsp1_rep	three_prime_UTR	25958866	25959054	.	-	.	Parent=Os07t0626600-01
Chr07	irgsp1_rep	mRNA	25964660	25965948	.	+	.	ID=Os07t0626700-01;Name=Os07t0626700-01;Locus_id=Os07g0626700;Note=Similar to Peroxidase (EC 1.11.1.7).;Transcript_evidence=AK066653 (DDBJ%2C Best hit);ORF_evidence=Q5U1T3 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255);NIAS_FLcDNA=J013071P05;Expression=AK066653;TENOR=Os07t0626700-01;KEGG=Os07t0626700-01 (EC:1.11.1.7)
Chr07	irgsp1_rep	five_prime_UTR	25964660	25965438	.	+	.	Parent=Os07t0626700-01
Chr07	irgsp1_rep	CDS	25965439	25965819	.	+	0	Parent=Os07t0626700-01
Chr07	irgsp1_rep	three_prime_UTR	25965820	25965948	.	+	.	Parent=Os07t0626700-01
Chr07	irgsp1_rep	mRNA	25966100	25967412	.	-	.	ID=Os07t0626800-01;Name=Os07t0626800-01;Locus_id=Os07g0626800;Note=Amine oxidase domain containing protein.;Transcript_evidence=AK066185 (DDBJ%2C Best hit);ORF_evidence=XP_002884742.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Amine oxidase (IPR002937);NIAS_FLcDNA=J013056F23;Expression=AK066185;TENOR=Os07t0626800-01;KEGG=Os07t0626800-01
Chr07	irgsp1_rep	CDS	25966219	25967412	.	-	0	Parent=Os07t0626800-01
Chr07	irgsp1_rep	three_prime_UTR	25966100	25966218	.	-	.	Parent=Os07t0626800-01
Chr07	irgsp1_rep	mRNA	25977968	25979935	.	+	.	ID=Os07t0626900-01;Name=Os07t0626900-01;Locus_id=Os07g0626900;Oryzabase Gene Symbol Synonym(s)=OsRFPHC-6;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPHC-6%2C RING-HC protein 6;Note=Similar to RKP (Related to KPC1)%3B protein binding / zinc ion binding.;Transcript_evidence=AK063254 (DDBJ%2C Best hit);ORF_evidence=NP_850020.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=001-112-H07;Oryzabase=11790;TENOR=Os07t0626900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	25977968	25977968	.	+	.	Parent=Os07t0626900-01
Chr07	irgsp1_rep	CDS	25977969	25978058	.	+	0	Parent=Os07t0626900-01
Chr07	irgsp1_rep	CDS	25978390	25978589	.	+	0	Parent=Os07t0626900-01
Chr07	irgsp1_rep	CDS	25978874	25979078	.	+	1	Parent=Os07t0626900-01
Chr07	irgsp1_rep	CDS	25979198	25979524	.	+	0	Parent=Os07t0626900-01
Chr07	irgsp1_rep	three_prime_UTR	25979525	25979935	.	+	.	Parent=Os07t0626900-01
Chr07	irgsp1_rep	mRNA	25980423	25984853	.	+	.	ID=Os07t0627000-01;Name=Os07t0627000-01;Locus_id=Os07g0627000;RAP-DB Gene Symbol Synonym(s)=DPE1%2C OsDPE1;RAP-DB Gene Name Synonym(s)=disproportionating enzyme1;CGSNL Gene Symbol=DPE1;CGSNL Gene Name=DISPROPORTIONATING ENZYME 1;Oryzabase Gene Symbol Synonym(s)=OsDPE1%2C OsDpe1%2C Dpe1;Oryzabase Gene Name Synonym(s)=disproportionating enzyme 1;Note=Plastidial disproportionating enzyme1%2C alpha-1%2C4-D-glucanotransferase%2C Storage starch synthesis in rice endosperm;Transcript_evidence=AK318541,AB626975;ORF_evidence=Q8LI30;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: 4-alpha-glucanotransferase activity (GO:0004134);InterPro=Glycoside hydrolase%2C family 77 (IPR003385),Glycoside hydrolase superfamily (IPR017853),Glycoside hydrolase%2C catalytic domain (IPR013781);NIAS_FLcDNA=J075088C22;Manual Curation=December 17%2C 2015;Literature_PMID=26471894;Oryzabase=21327;TENOR=Os07t0627000-01;KEGG=Os07t0627000-01 (EC:2.4.1.25)
Chr07	irgsp1_rep	five_prime_UTR	25980423	25980505	.	+	.	Parent=Os07t0627000-01
Chr07	irgsp1_rep	CDS	25980506	25980913	.	+	0	Parent=Os07t0627000-01
Chr07	irgsp1_rep	CDS	25981447	25981509	.	+	0	Parent=Os07t0627000-01
Chr07	irgsp1_rep	CDS	25981585	25981673	.	+	0	Parent=Os07t0627000-01
Chr07	irgsp1_rep	CDS	25981757	25981817	.	+	1	Parent=Os07t0627000-01
Chr07	irgsp1_rep	CDS	25982003	25982078	.	+	0	Parent=Os07t0627000-01
Chr07	irgsp1_rep	CDS	25982450	25982589	.	+	2	Parent=Os07t0627000-01
Chr07	irgsp1_rep	CDS	25982679	25982837	.	+	0	Parent=Os07t0627000-01
Chr07	irgsp1_rep	CDS	25982931	25983007	.	+	0	Parent=Os07t0627000-01
Chr07	irgsp1_rep	CDS	25983095	25983234	.	+	1	Parent=Os07t0627000-01
Chr07	irgsp1_rep	CDS	25983332	25983363	.	+	2	Parent=Os07t0627000-01
Chr07	irgsp1_rep	CDS	25983457	25983531	.	+	0	Parent=Os07t0627000-01
Chr07	irgsp1_rep	CDS	25983848	25983920	.	+	0	Parent=Os07t0627000-01
Chr07	irgsp1_rep	CDS	25984036	25984124	.	+	2	Parent=Os07t0627000-01
Chr07	irgsp1_rep	CDS	25984235	25984279	.	+	0	Parent=Os07t0627000-01
Chr07	irgsp1_rep	CDS	25984361	25984513	.	+	0	Parent=Os07t0627000-01
Chr07	irgsp1_rep	CDS	25984603	25984707	.	+	0	Parent=Os07t0627000-01
Chr07	irgsp1_rep	three_prime_UTR	25984708	25984853	.	+	.	Parent=Os07t0627000-01
Chr07	irgsp1_rep	mRNA	25986046	25987423	.	+	.	ID=Os07t0627100-01;Name=Os07t0627100-01;Locus_id=Os07g0627100;Note=MULE transposase%2C conserved domain domain containing protein.;Transcript_evidence=AK119510 (DDBJ%2C Best hit);ORF_evidence=B9FUC4 (UniProt);InterPro=MULE transposase domain (IPR018289);NIAS_FLcDNA=001-134-F09;Expression=AK119510;TENOR=Os07t0627100-01;KEGG=Os07t0627100-01
Chr07	irgsp1_rep	five_prime_UTR	25986046	25986046	.	+	.	Parent=Os07t0627100-01
Chr07	irgsp1_rep	CDS	25986047	25986334	.	+	0	Parent=Os07t0627100-01
Chr07	irgsp1_rep	three_prime_UTR	25986335	25987423	.	+	.	Parent=Os07t0627100-01
Chr07	irgsp1_rep	mRNA	25998785	26003373	.	+	.	ID=Os07t0627300-01;Name=Os07t0627300-01;Locus_id=Os07g0627300;RAP-DB Gene Symbol Synonym(s)=OsFLP;RAP-DB Gene Name Synonym(s)=FOUR LIPS;CGSNL Gene Symbol=FLP;CGSNL Gene Name=FOUR LIPS;Oryzabase Gene Symbol Synonym(s)=OsFLP;Note=R2R3 MYB transcription factor%2C Regulation of the orientation of guard mother cell (GMC) symmetrical division;Transcript_evidence=AK063426;ORF_evidence=Q8LI26;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeobox-like domain superfamily (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930);NIAS_FLcDNA=001-115-D02;Manual Curation=March 5%2C 2020;Literature_PMID=30825332;Oryzabase=16308;Expression=AK063426;TENOR=Os07t0627300-01;KEGG=Os07t0627300-01
Chr07	irgsp1_rep	five_prime_UTR	25998785	25999023	.	+	.	Parent=Os07t0627300-01
Chr07	irgsp1_rep	CDS	25999024	25999131	.	+	0	Parent=Os07t0627300-01
Chr07	irgsp1_rep	CDS	25999991	26000037	.	+	0	Parent=Os07t0627300-01
Chr07	irgsp1_rep	CDS	26000131	26000187	.	+	1	Parent=Os07t0627300-01
Chr07	irgsp1_rep	CDS	26000312	26000384	.	+	1	Parent=Os07t0627300-01
Chr07	irgsp1_rep	CDS	26000990	26001045	.	+	0	Parent=Os07t0627300-01
Chr07	irgsp1_rep	CDS	26001139	26001318	.	+	1	Parent=Os07t0627300-01
Chr07	irgsp1_rep	CDS	26001393	26001586	.	+	1	Parent=Os07t0627300-01
Chr07	irgsp1_rep	CDS	26001675	26001814	.	+	2	Parent=Os07t0627300-01
Chr07	irgsp1_rep	CDS	26001904	26002046	.	+	0	Parent=Os07t0627300-01
Chr07	irgsp1_rep	CDS	26002129	26002277	.	+	1	Parent=Os07t0627300-01
Chr07	irgsp1_rep	CDS	26002364	26002728	.	+	2	Parent=Os07t0627300-01
Chr07	irgsp1_rep	CDS	26002844	26002948	.	+	0	Parent=Os07t0627300-01
Chr07	irgsp1_rep	three_prime_UTR	26002949	26003373	.	+	.	Parent=Os07t0627300-01
Chr07	irgsp1_rep	mRNA	26004628	26007621	.	+	.	ID=Os07t0627400-01;Name=Os07t0627400-01;Locus_id=Os07g0627400;Note=Conserved hypothetical protein.;Transcript_evidence=AK241323 (DDBJ%2C Best hit);ORF_evidence=NP_001060345.1 (RefSeq);NIAS_FLcDNA=J065142N02;TENOR=Os07t0627400-01;KEGG=Os07t0627400-01
Chr07	irgsp1_rep	five_prime_UTR	26004628	26004979	.	+	.	Parent=Os07t0627400-01
Chr07	irgsp1_rep	CDS	26004980	26005354	.	+	0	Parent=Os07t0627400-01
Chr07	irgsp1_rep	CDS	26006881	26007219	.	+	0	Parent=Os07t0627400-01
Chr07	irgsp1_rep	three_prime_UTR	26007220	26007621	.	+	.	Parent=Os07t0627400-01
Chr07	irgsp1_rep	mRNA	26009099	26009867	.	-	.	ID=Os07t0627500-00;Name=Os07t0627500-00;Locus_id=Os07g0627500;Note=Hypothetical conserved gene.;Transcript_evidence=CU406689 (DDBJ%2C Best hit);ORF_evidence=Q8LI24 (UniProt);TENOR=Os07t0627500-00;KEGG=Os07t0627500-00
Chr07	irgsp1_rep	five_prime_UTR	26009500	26009867	.	-	.	Parent=Os07t0627500-00
Chr07	irgsp1_rep	CDS	26009224	26009499	.	-	0	Parent=Os07t0627500-00
Chr07	irgsp1_rep	three_prime_UTR	26009099	26009223	.	-	.	Parent=Os07t0627500-00
Chr07	irgsp1_rep	mRNA	26013462	26013708	.	+	.	ID=Os07t0627600-00;Name=Os07t0627600-00;Locus_id=Os07g0627600;Note=Non-protein coding transcript.;Transcript_evidence=CT836137 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os07t0627600-00
Chr07	irgsp1_rep	exon	26013462	26013708	.	+	.	Parent=Os07t0627600-00
Chr07	irgsp1_rep	mRNA	26014914	26017793	.	-	.	ID=Os07t0627700-01;Name=Os07t0627700-01;Locus_id=Os07g0627700;Oryzabase Gene Symbol Synonym(s)=OsGL1-9;Oryzabase Gene Name Synonym(s)=Glossy1-homologous gene 9;Note=Fatty acid hydroxylase domain containing protein.;Transcript_evidence=AK070893 (DDBJ%2C Best hit);ORF_evidence=B4FWT9 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Fatty acid hydroxylase (IPR006694);NIAS_FLcDNA=J023072H19;Oryzabase=15283;Expression=AK070893;TENOR=Os07t0627700-01;KEGG=Os07t0627700-01
Chr07	irgsp1_rep	five_prime_UTR	26017427	26017793	.	-	.	Parent=Os07t0627700-01
Chr07	irgsp1_rep	CDS	26017187	26017426	.	-	0	Parent=Os07t0627700-01
Chr07	irgsp1_rep	CDS	26015362	26015898	.	-	0	Parent=Os07t0627700-01
Chr07	irgsp1_rep	three_prime_UTR	26014914	26015361	.	-	.	Parent=Os07t0627700-01
Chr07	irgsp1_rep	mRNA	26016057	26017771	.	-	.	ID=Os07t0627700-02;Name=Os07t0627700-02;Locus_id=Os07g0627700;Oryzabase Gene Symbol Synonym(s)=OsGL1-9;Oryzabase Gene Name Synonym(s)=Glossy1-homologous gene 9;Note=Similar to Protein SUR2.;Transcript_evidence=AK110696 (DDBJ%2C Best hit);ORF_evidence=B4FWT9 (UniProt);NIAS_FLcDNA=002-170-A11;Oryzabase=15283;Expression=AK110696;TENOR=Os07t0627700-02;KEGG=Os07t0627700-02
Chr07	irgsp1_rep	five_prime_UTR	26017427	26017771	.	-	.	Parent=Os07t0627700-02
Chr07	irgsp1_rep	CDS	26017187	26017426	.	-	0	Parent=Os07t0627700-02
Chr07	irgsp1_rep	CDS	26016267	26016356	.	-	0	Parent=Os07t0627700-02
Chr07	irgsp1_rep	three_prime_UTR	26016057	26016266	.	-	.	Parent=Os07t0627700-02
Chr07	irgsp1_rep	mRNA	26019596	26024727	.	-	.	ID=Os07t0627800-01;Name=Os07t0627800-01;Locus_id=Os07g0627800;Note=Similar to DRG-like OBG family GTpase fused to an RNA binding domain TGS domain%2C Fun11p.;Transcript_evidence=AK066361 (DDBJ%2C Best hit);ORF_evidence=NP_001149773.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=GTP-binding domain%2C HSR1-related (IPR002917),TGS (IPR004095),Small GTP-binding protein domain (IPR005225),GTP1/OBG (IPR006073),GTP1/OBG%2C conserved site (IPR006074),TGS-like (IPR012676);NIAS_FLcDNA=J013063L05;Expression=AK066361;TENOR=Os07t0627800-01;KEGG=Os07t0627800-01
Chr07	irgsp1_rep	five_prime_UTR	26024607	26024727	.	-	.	Parent=Os07t0627800-01
Chr07	irgsp1_rep	CDS	26024565	26024606	.	-	0	Parent=Os07t0627800-01
Chr07	irgsp1_rep	CDS	26023425	26023478	.	-	0	Parent=Os07t0627800-01
Chr07	irgsp1_rep	CDS	26022752	26022928	.	-	0	Parent=Os07t0627800-01
Chr07	irgsp1_rep	CDS	26022415	26022486	.	-	0	Parent=Os07t0627800-01
Chr07	irgsp1_rep	CDS	26022276	26022335	.	-	0	Parent=Os07t0627800-01
Chr07	irgsp1_rep	CDS	26021396	26021505	.	-	0	Parent=Os07t0627800-01
Chr07	irgsp1_rep	CDS	26020480	26020779	.	-	1	Parent=Os07t0627800-01
Chr07	irgsp1_rep	CDS	26020192	26020383	.	-	1	Parent=Os07t0627800-01
Chr07	irgsp1_rep	CDS	26020057	26020108	.	-	1	Parent=Os07t0627800-01
Chr07	irgsp1_rep	CDS	26019912	26019962	.	-	0	Parent=Os07t0627800-01
Chr07	irgsp1_rep	three_prime_UTR	26019596	26019911	.	-	.	Parent=Os07t0627800-01
Chr07	irgsp1_rep	mRNA	26024972	26025019	.	-	.	ID=Os07t0627900-00;Name=Os07t0627900-00;Locus_id=Os07g0627900;Note=Non-protein coding transcript.;Transcript_evidence=X02683 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0627900-00
Chr07	irgsp1_rep	exon	26024972	26025019	.	-	.	Parent=Os07t0627900-00
Chr07	irgsp1_rep	mRNA	26036373	26039287	.	+	.	ID=Os07t0628301-00;Name=Os07t0628301-00;Locus_id=Os07g0628301;Note=Hypothetical gene.;Transcript_evidence=BT016876 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0628301-00;KEGG=Os07t0628301-00
Chr07	irgsp1_rep	five_prime_UTR	26036373	26036447	.	+	.	Parent=Os07t0628301-00
Chr07	irgsp1_rep	CDS	26036448	26036647	.	+	0	Parent=Os07t0628301-00
Chr07	irgsp1_rep	CDS	26038260	26038338	.	+	1	Parent=Os07t0628301-00
Chr07	irgsp1_rep	three_prime_UTR	26038339	26038616	.	+	.	Parent=Os07t0628301-00
Chr07	irgsp1_rep	three_prime_UTR	26039176	26039287	.	+	.	Parent=Os07t0628301-00
Chr07	irgsp1_rep	mRNA	26036275	26039311	.	-	.	ID=Os07t0628400-00;Name=Os07t0628400-00;Locus_id=Os07g0628400;Oryzabase Gene Symbol Synonym(s)=RPS9%2C OsRPS9;Oryzabase Gene Name Synonym(s)=ribosomal protein S9%2C ribosomal protein small subunit 9;Note=Similar to 40S ribosomal protein S9.;Transcript_evidence=FP094734 (DDBJ);ORF_evidence=NP_001149705.1 (RefSeq);GO=Molecular Function: RNA binding (GO:0003723);InterPro=RNA-binding S4 (IPR002942),Ribosomal protein S4/S9 (IPR022801);Oryzabase=22173;TENOR=Os07t0628400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	26039082	26039311	.	-	.	Parent=Os07t0628400-00
Chr07	irgsp1_rep	five_prime_UTR	26038335	26038533	.	-	.	Parent=Os07t0628400-00
Chr07	irgsp1_rep	CDS	26038261	26038334	.	-	0	Parent=Os07t0628400-00
Chr07	irgsp1_rep	CDS	26036441	26036648	.	-	1	Parent=Os07t0628400-00
Chr07	irgsp1_rep	three_prime_UTR	26036275	26036440	.	-	.	Parent=Os07t0628400-00
Chr07	irgsp1_rep	mRNA	26039710	26042226	.	-	.	ID=Os07t0628500-01;Name=Os07t0628500-01;Locus_id=Os07g0628500;Oryzabase Gene Symbol Synonym(s)=OsbHLH1%2C OsbHLH062;Oryzabase Gene Name Synonym(s)=basic Helix-Loop-Helix protein 1%2C basic helix-loop-helix protein 062;Note=Basic helix-loop-helix dimerisation region bHLH domain containing protein.;Transcript_evidence=AK070963 (DDBJ%2C Best hit);ORF_evidence=NP_001149147.1 (RefSeq);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J023068N18;Oryzabase=14526;Expression=AK070963;TENOR=Os07t0628500-01;KEGG=Os07t0628500-01
Chr07	irgsp1_rep	five_prime_UTR	26041991	26042226	.	-	.	Parent=Os07t0628500-01
Chr07	irgsp1_rep	five_prime_UTR	26041901	26041912	.	-	.	Parent=Os07t0628500-01
Chr07	irgsp1_rep	CDS	26041833	26041900	.	-	0	Parent=Os07t0628500-01
Chr07	irgsp1_rep	CDS	26041189	26041307	.	-	1	Parent=Os07t0628500-01
Chr07	irgsp1_rep	CDS	26040606	26040733	.	-	2	Parent=Os07t0628500-01
Chr07	irgsp1_rep	CDS	26039880	26040362	.	-	0	Parent=Os07t0628500-01
Chr07	irgsp1_rep	three_prime_UTR	26039710	26039879	.	-	.	Parent=Os07t0628500-01
Chr07	irgsp1_rep	mRNA	26039699	26042149	.	-	.	ID=Os07t0628500-02;Name=Os07t0628500-02;Locus_id=Os07g0628500;Oryzabase Gene Symbol Synonym(s)=OsbHLH1%2C OsbHLH062;Oryzabase Gene Name Synonym(s)=basic Helix-Loop-Helix protein 1%2C basic helix-loop-helix protein 062;Note=Basic helix-loop-helix dimerisation region bHLH domain containing protein.;Transcript_evidence=AK059560 (DDBJ%2C Best hit);ORF_evidence=NP_001149147.1 (RefSeq);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=001-029-H01;Oryzabase=14526;TENOR=Os07t0628500-02
Chr07	irgsp1_rep	five_prime_UTR	26041991	26042149	.	-	.	Parent=Os07t0628500-02
Chr07	irgsp1_rep	five_prime_UTR	26041901	26041912	.	-	.	Parent=Os07t0628500-02
Chr07	irgsp1_rep	CDS	26041833	26041900	.	-	0	Parent=Os07t0628500-02
Chr07	irgsp1_rep	CDS	26041189	26041307	.	-	1	Parent=Os07t0628500-02
Chr07	irgsp1_rep	CDS	26040606	26040733	.	-	2	Parent=Os07t0628500-02
Chr07	irgsp1_rep	CDS	26039880	26040362	.	-	0	Parent=Os07t0628500-02
Chr07	irgsp1_rep	three_prime_UTR	26039699	26039879	.	-	.	Parent=Os07t0628500-02
Chr07	irgsp1_rep	mRNA	26044575	26047500	.	-	.	ID=Os07t0628600-00;Name=Os07t0628600-00;Locus_id=Os07g0628600;CGSNL Gene Symbol=ORC6;CGSNL Gene Name=ORIGIN RECOGNITION COMPLEX 6;Oryzabase Gene Symbol Synonym(s)=OsORC6;Note=Origin recognition complex subunit 6 family protein.;Transcript_evidence=FP100872 (DDBJ);ORF_evidence=NP_001151122.1 (RefSeq);GO=Biological Process: DNA replication (GO:0006260),Cellular Component: nuclear origin of replication recognition complex (GO:0005664),Molecular Function: DNA binding (GO:0003677);InterPro=Origin recognition complex%2C subunit 6 (IPR008721),Origin recognition complex%2C subunit 6%2C metazoa/plant (IPR020529);Oryzabase=9196;TENOR=Os07t0628600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	26047493	26047500	.	-	.	Parent=Os07t0628600-00
Chr07	irgsp1_rep	CDS	26047373	26047492	.	-	0	Parent=Os07t0628600-00
Chr07	irgsp1_rep	CDS	26047232	26047278	.	-	0	Parent=Os07t0628600-00
Chr07	irgsp1_rep	CDS	26047017	26047121	.	-	1	Parent=Os07t0628600-00
Chr07	irgsp1_rep	CDS	26046835	26046915	.	-	1	Parent=Os07t0628600-00
Chr07	irgsp1_rep	CDS	26046555	26046666	.	-	1	Parent=Os07t0628600-00
Chr07	irgsp1_rep	CDS	26046406	26046468	.	-	0	Parent=Os07t0628600-00
Chr07	irgsp1_rep	CDS	26046166	26046253	.	-	0	Parent=Os07t0628600-00
Chr07	irgsp1_rep	CDS	26045898	26045989	.	-	2	Parent=Os07t0628600-00
Chr07	irgsp1_rep	CDS	26045076	26045166	.	-	0	Parent=Os07t0628600-00
Chr07	irgsp1_rep	CDS	26044753	26044841	.	-	2	Parent=Os07t0628600-00
Chr07	irgsp1_rep	three_prime_UTR	26044575	26044752	.	-	.	Parent=Os07t0628600-00
Chr07	irgsp1_rep	mRNA	26052222	26055831	.	-	.	ID=Os07t0628700-01;Name=Os07t0628700-01;Locus_id=Os07g0628700;Note=Similar to Receptor protein kinase.;Transcript_evidence=AK111594 (DDBJ%2C Best hit);ORF_evidence=NP_001147287.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Gnk2-homologous domain (IPR002902),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013091C19;Expression=AK111594;TENOR=Os07t0628700-01;KEGG=Os07t0628700-01
Chr07	irgsp1_rep	five_prime_UTR	26055732	26055831	.	-	.	Parent=Os07t0628700-01
Chr07	irgsp1_rep	CDS	26054909	26055731	.	-	0	Parent=Os07t0628700-01
Chr07	irgsp1_rep	CDS	26054489	26054617	.	-	2	Parent=Os07t0628700-01
Chr07	irgsp1_rep	CDS	26053790	26053920	.	-	2	Parent=Os07t0628700-01
Chr07	irgsp1_rep	CDS	26053478	26053688	.	-	0	Parent=Os07t0628700-01
Chr07	irgsp1_rep	CDS	26053126	26053363	.	-	2	Parent=Os07t0628700-01
Chr07	irgsp1_rep	CDS	26052891	26053041	.	-	1	Parent=Os07t0628700-01
Chr07	irgsp1_rep	CDS	26052453	26052803	.	-	0	Parent=Os07t0628700-01
Chr07	irgsp1_rep	three_prime_UTR	26052222	26052452	.	-	.	Parent=Os07t0628700-01
Chr07	irgsp1_rep	mRNA	26059428	26062993	.	-	.	ID=Os07t0628900-01;Name=Os07t0628900-01;Locus_id=Os07g0628900;Note=Similar to KI domain interacting kinase 1.;Transcript_evidence=AK111564 (DDBJ%2C Best hit);ORF_evidence=NP_001147287.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Gnk2-homologous domain (IPR002902),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013073N09;Expression=AK111564;TENOR=Os07t0628900-01;KEGG=Os07t0628900-01
Chr07	irgsp1_rep	five_prime_UTR	26062907	26062993	.	-	.	Parent=Os07t0628900-01
Chr07	irgsp1_rep	CDS	26062120	26062906	.	-	0	Parent=Os07t0628900-01
Chr07	irgsp1_rep	CDS	26061475	26061603	.	-	2	Parent=Os07t0628900-01
Chr07	irgsp1_rep	CDS	26061211	26061335	.	-	2	Parent=Os07t0628900-01
Chr07	irgsp1_rep	CDS	26060873	26061083	.	-	0	Parent=Os07t0628900-01
Chr07	irgsp1_rep	CDS	26060555	26060792	.	-	2	Parent=Os07t0628900-01
Chr07	irgsp1_rep	CDS	26060271	26060421	.	-	1	Parent=Os07t0628900-01
Chr07	irgsp1_rep	CDS	26059739	26060041	.	-	0	Parent=Os07t0628900-01
Chr07	irgsp1_rep	three_prime_UTR	26059428	26059738	.	-	.	Parent=Os07t0628900-01
Chr07	irgsp1_rep	mRNA	26075493	26077145	.	-	.	ID=Os07t0629000-01;Name=Os07t0629000-01;Locus_id=Os07g0629000;Oryzabase Gene Symbol Synonym(s)=R2R3-MYB;Note=Similar to P-type R2R3 Myb protein (Fragment).;Transcript_evidence=AK101674 (DDBJ%2C Best hit);ORF_evidence=Q43598 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J033058E05;Oryzabase=16299;Expression=AK101674;TENOR=Os07t0629000-01;KEGG=Os07t0629000-01
Chr07	irgsp1_rep	five_prime_UTR	26077032	26077145	.	-	.	Parent=Os07t0629000-01
Chr07	irgsp1_rep	CDS	26076899	26077031	.	-	0	Parent=Os07t0629000-01
Chr07	irgsp1_rep	CDS	26076581	26076805	.	-	2	Parent=Os07t0629000-01
Chr07	irgsp1_rep	CDS	26075913	26076013	.	-	2	Parent=Os07t0629000-01
Chr07	irgsp1_rep	three_prime_UTR	26075493	26075912	.	-	.	Parent=Os07t0629000-01
Chr07	irgsp1_rep	mRNA	26098164	26099697	.	+	.	ID=Os07t0629300-00;Name=Os07t0629300-00;Locus_id=Os07g0629300;CGSNL Gene Symbol=RNS7;CGSNL Gene Name=RIBONUCLEASE 7;Oryzabase Gene Symbol Synonym(s)=OsRNS7;Oryzabase Gene Name Synonym(s)=RNase 7;Note=Similar to Ribonuclease (Fragment).;Transcript_evidence=GQ507488 (DDBJ%2C Best hit);ORF_evidence=C9EI09 (UniProt);GO=Molecular Function: RNA binding (GO:0003723),Molecular Function: ribonuclease T2 activity (GO:0033897);InterPro=Ribonuclease T2 (IPR001568),Ribonuclease T2%2C active site (IPR018188);Oryzabase=14749;TENOR=Os07t0629300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	26098164	26098234	.	+	.	Parent=Os07t0629300-00
Chr07	irgsp1_rep	CDS	26098235	26098252	.	+	0	Parent=Os07t0629300-00
Chr07	irgsp1_rep	CDS	26099312	26099697	.	+	0	Parent=Os07t0629300-00
Chr07	irgsp1_rep	mRNA	26102431	26104691	.	-	.	ID=Os07t0629500-01;Name=Os07t0629500-01;Locus_id=Os07g0629500;Note=Similar to cDNA clone:002-114-B06%2C full insert sequence.;Transcript_evidence=AK106630 (DDBJ%2C Best hit);ORF_evidence=B7EZJ6 (UniProt);NIAS_FLcDNA=002-113-D01;TENOR=Os07t0629500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	26104583	26104691	.	-	.	Parent=Os07t0629500-01
Chr07	irgsp1_rep	CDS	26104487	26104582	.	-	0	Parent=Os07t0629500-01
Chr07	irgsp1_rep	three_prime_UTR	26104259	26104486	.	-	.	Parent=Os07t0629500-01
Chr07	irgsp1_rep	three_prime_UTR	26102431	26104017	.	-	.	Parent=Os07t0629500-01
Chr07	irgsp1_rep	mRNA	26127624	26128255	.	+	.	ID=Os07t0629900-00;Name=Os07t0629900-00;Locus_id=Os07g0629900;CGSNL Gene Symbol=RNS8;CGSNL Gene Name=RIBONUCLEASE 8;Oryzabase Gene Symbol Synonym(s)=OsRNS8;Oryzabase Gene Name Synonym(s)=RNase 8;Note=Ribonuclease T2 domain containing protein.;Transcript_evidence=GQ507489 (DDBJ%2C Best hit);ORF_evidence=Q8H4E6 (UniProt);GO=Molecular Function: RNA binding (GO:0003723),Molecular Function: ribonuclease T2 activity (GO:0033897);InterPro=Ribonuclease T2 (IPR001568),Ribonuclease T2%2C active site (IPR018188);Oryzabase=14750;TENOR=Os07t0629900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	26127624	26128255	.	+	0	Parent=Os07t0629900-00
Chr07	irgsp1_rep	mRNA	26141469	26142921	.	+	.	ID=Os07t0630400-01;Name=Os07t0630400-01;Locus_id=Os07g0630400;CGSNL Gene Symbol=RNS1;CGSNL Gene Name=RIBONUCLEASE 1;Oryzabase Gene Symbol Synonym(s)=OsRNS1;Oryzabase Gene Name Synonym(s)=RNase 1;Note=Ribonuclease T2 family protein.;Transcript_evidence=AK060320 (DDBJ%2C Best hit),AK104512 (DDBJ%2C Best hit);ORF_evidence=O04392 (UniProt);GO=Molecular Function: RNA binding (GO:0003723),Molecular Function: ribonuclease T2 activity (GO:0033897);InterPro=Ribonuclease T2 (IPR001568),Ribonuclease T2%2C active site (IPR018188);NIAS_FLcDNA=001-007-F07,006-302-H11;Oryzabase=13012;TENOR=Os07t0630400-01
Chr07	irgsp1_rep	five_prime_UTR	26141469	26141526	.	+	.	Parent=Os07t0630400-01
Chr07	irgsp1_rep	CDS	26141527	26141619	.	+	0	Parent=Os07t0630400-01
Chr07	irgsp1_rep	CDS	26141976	26142653	.	+	0	Parent=Os07t0630400-01
Chr07	irgsp1_rep	three_prime_UTR	26142654	26142921	.	+	.	Parent=Os07t0630400-01
Chr07	irgsp1_rep	mRNA	26141971	26142671	.	-	.	ID=Os07t0630533-00;Name=Os07t0630533-00;Locus_id=Os07g0630533;Note=Non-protein coding transcript.;Transcript_evidence=BT019161 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0630533-00
Chr07	irgsp1_rep	exon	26142171	26142671	.	-	.	Parent=Os07t0630533-00
Chr07	irgsp1_rep	exon	26141971	26142070	.	-	.	Parent=Os07t0630533-00
Chr07	irgsp1_rep	mRNA	26153825	26156006	.	-	.	ID=Os07t0630800-01;Name=Os07t0630800-01;Locus_id=Os07g0630800;Note=Similar to Nodule-enhanced malate dehydrogenase.;Transcript_evidence=AK071297 (DDBJ%2C Best hit);ORF_evidence=O48906 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: malate metabolic process (GO:0006108),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: malate dehydrogenase activity (GO:0016615),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: L-malate dehydrogenase activity (GO:0030060);InterPro=Lactate/malate dehydrogenase%2C N-terminal (IPR001236),Malate dehydrogenase%2C active site (IPR001252),Malate dehydrogenase%2C type 1 (IPR010097),Lactate dehydrogenase/glycoside hydrolase%2C family 4%2C C-terminal (IPR015955),NAD(P)-binding domain (IPR016040),Lactate/malate dehydrogenase%2C C-terminal (IPR022383);NIAS_FLcDNA=J023084J02;Expression=AK071297;TENOR=Os07t0630800-01;KEGG=Os07t0630800-01 (EC:1.1.1.37)
Chr07	irgsp1_rep	five_prime_UTR	26155932	26156006	.	-	.	Parent=Os07t0630800-01
Chr07	irgsp1_rep	five_prime_UTR	26155348	26155357	.	-	.	Parent=Os07t0630800-01
Chr07	irgsp1_rep	CDS	26154133	26155347	.	-	0	Parent=Os07t0630800-01
Chr07	irgsp1_rep	three_prime_UTR	26153825	26154132	.	-	.	Parent=Os07t0630800-01
Chr07	irgsp1_rep	mRNA	26154069	26155973	.	-	.	ID=Os07t0630800-02;Name=Os07t0630800-02;Locus_id=Os07g0630800;Note=Similar to Nodule-enhanced malate dehydrogenase.;Transcript_evidence=AK106083 (DDBJ%2C Best hit);ORF_evidence=O48906 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: malate metabolic process (GO:0006108),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: malate dehydrogenase activity (GO:0016615),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: L-malate dehydrogenase activity (GO:0030060);InterPro=Lactate/malate dehydrogenase%2C N-terminal (IPR001236),Malate dehydrogenase%2C active site (IPR001252),Malate dehydrogenase%2C type 1 (IPR010097),Lactate dehydrogenase/glycoside hydrolase%2C family 4%2C C-terminal (IPR015955),NAD(P)-binding domain (IPR016040),Lactate/malate dehydrogenase%2C C-terminal (IPR022383);NIAS_FLcDNA=001-207-A10;Expression=AK106083;TENOR=Os07t0630800-02;KEGG=Os07t0630800-02 (EC:1.1.1.37)
Chr07	irgsp1_rep	five_prime_UTR	26155932	26155973	.	-	.	Parent=Os07t0630800-02
Chr07	irgsp1_rep	five_prime_UTR	26155348	26155357	.	-	.	Parent=Os07t0630800-02
Chr07	irgsp1_rep	CDS	26154133	26155347	.	-	0	Parent=Os07t0630800-02
Chr07	irgsp1_rep	three_prime_UTR	26154069	26154132	.	-	.	Parent=Os07t0630800-02
Chr07	irgsp1_rep	mRNA	26154069	26155901	.	-	.	ID=Os07t0630800-03;Name=Os07t0630800-03;Locus_id=Os07g0630800;Note=Similar to Nodule-enhanced malate dehydrogenase.;Transcript_evidence=AK068064 (DDBJ%2C Best hit);ORF_evidence=O48906 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: malate metabolic process (GO:0006108),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: malate dehydrogenase activity (GO:0016615),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: L-malate dehydrogenase activity (GO:0030060);InterPro=Lactate/malate dehydrogenase%2C N-terminal (IPR001236),Malate dehydrogenase%2C active site (IPR001252),Malate dehydrogenase%2C type 1 (IPR010097),Lactate dehydrogenase/glycoside hydrolase%2C family 4%2C C-terminal (IPR015955),NAD(P)-binding domain (IPR016040),Lactate/malate dehydrogenase%2C C-terminal (IPR022383);NIAS_FLcDNA=J013130E16;TENOR=Os07t0630800-03
Chr07	irgsp1_rep	five_prime_UTR	26155348	26155901	.	-	.	Parent=Os07t0630800-03
Chr07	irgsp1_rep	CDS	26154133	26155347	.	-	0	Parent=Os07t0630800-03
Chr07	irgsp1_rep	three_prime_UTR	26154069	26154132	.	-	.	Parent=Os07t0630800-03
Chr07	irgsp1_rep	mRNA	26154069	26155548	.	-	.	ID=Os07t0630800-04;Name=Os07t0630800-04;Locus_id=Os07g0630800;Note=Similar to Nodule-enhanced malate dehydrogenase.;Transcript_evidence=AK059570 (DDBJ%2C Best hit);ORF_evidence=O48906 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: malate metabolic process (GO:0006108),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: malate dehydrogenase activity (GO:0016615),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: L-malate dehydrogenase activity (GO:0030060);InterPro=Lactate/malate dehydrogenase%2C N-terminal (IPR001236),Malate dehydrogenase%2C active site (IPR001252),Malate dehydrogenase%2C type 1 (IPR010097),Lactate dehydrogenase/glycoside hydrolase%2C family 4%2C C-terminal (IPR015955),NAD(P)-binding domain (IPR016040),Lactate/malate dehydrogenase%2C C-terminal (IPR022383);NIAS_FLcDNA=001-030-A01;TENOR=Os07t0630800-04
Chr07	irgsp1_rep	five_prime_UTR	26155348	26155548	.	-	.	Parent=Os07t0630800-04
Chr07	irgsp1_rep	CDS	26154133	26155347	.	-	0	Parent=Os07t0630800-04
Chr07	irgsp1_rep	three_prime_UTR	26154069	26154132	.	-	.	Parent=Os07t0630800-04
Chr07	irgsp1_rep	mRNA	26158339	26163360	.	+	.	ID=Os07t0630900-01;Name=Os07t0630900-01;Locus_id=Os07g0630900;CGSNL Gene Symbol=CSLA7;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE A7;Oryzabase Gene Symbol Synonym(s)=OsCslA7%2C OsCSLA7;Note=Similar to cDNA clone:J013000F18%2C full insert sequence.;Transcript_evidence=AK122106 (DDBJ%2C Best hit);ORF_evidence=B7EA33 (UniProt);InterPro=Glycosyl transferase%2C family 2 (IPR001173);NIAS_FLcDNA=J033126E08;Oryzabase=13885;TENOR=Os07t0630900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	26158339	26158436	.	+	.	Parent=Os07t0630900-01
Chr07	irgsp1_rep	CDS	26158437	26158548	.	+	0	Parent=Os07t0630900-01
Chr07	irgsp1_rep	CDS	26158635	26159008	.	+	2	Parent=Os07t0630900-01
Chr07	irgsp1_rep	CDS	26159178	26159276	.	+	0	Parent=Os07t0630900-01
Chr07	irgsp1_rep	CDS	26161126	26161378	.	+	0	Parent=Os07t0630900-01
Chr07	irgsp1_rep	CDS	26161738	26161754	.	+	2	Parent=Os07t0630900-01
Chr07	irgsp1_rep	three_prime_UTR	26161755	26161858	.	+	.	Parent=Os07t0630900-01
Chr07	irgsp1_rep	three_prime_UTR	26161966	26162102	.	+	.	Parent=Os07t0630900-01
Chr07	irgsp1_rep	three_prime_UTR	26162194	26162307	.	+	.	Parent=Os07t0630900-01
Chr07	irgsp1_rep	three_prime_UTR	26162379	26162578	.	+	.	Parent=Os07t0630900-01
Chr07	irgsp1_rep	three_prime_UTR	26162674	26162865	.	+	.	Parent=Os07t0630900-01
Chr07	irgsp1_rep	three_prime_UTR	26162958	26163360	.	+	.	Parent=Os07t0630900-01
Chr07	irgsp1_rep	mRNA	26158409	26163357	.	+	.	ID=Os07t0630900-02;Name=Os07t0630900-02;Locus_id=Os07g0630900;CGSNL Gene Symbol=CSLA7;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE A7;Oryzabase Gene Symbol Synonym(s)=OsCslA7%2C OsCSLA7;Note=CSLA7 (Fragment).;Transcript_evidence=AK064833 (DDBJ%2C Best hit);ORF_evidence=B7F3Q6 (UniProt);InterPro=Glycosyl transferase%2C family 2 (IPR001173);NIAS_FLcDNA=J013000F18;Oryzabase=13885;Expression=AK064833;TENOR=Os07t0630900-02;KEGG=Os07t0630900-02
Chr07	irgsp1_rep	five_prime_UTR	26158409	26158436	.	+	.	Parent=Os07t0630900-02
Chr07	irgsp1_rep	CDS	26158437	26158548	.	+	0	Parent=Os07t0630900-02
Chr07	irgsp1_rep	CDS	26158635	26159008	.	+	2	Parent=Os07t0630900-02
Chr07	irgsp1_rep	CDS	26159178	26159276	.	+	0	Parent=Os07t0630900-02
Chr07	irgsp1_rep	CDS	26161126	26161378	.	+	0	Parent=Os07t0630900-02
Chr07	irgsp1_rep	CDS	26161748	26161858	.	+	2	Parent=Os07t0630900-02
Chr07	irgsp1_rep	CDS	26161966	26162102	.	+	2	Parent=Os07t0630900-02
Chr07	irgsp1_rep	CDS	26162194	26162307	.	+	0	Parent=Os07t0630900-02
Chr07	irgsp1_rep	CDS	26162379	26162578	.	+	0	Parent=Os07t0630900-02
Chr07	irgsp1_rep	CDS	26162674	26162865	.	+	1	Parent=Os07t0630900-02
Chr07	irgsp1_rep	CDS	26162958	26163123	.	+	1	Parent=Os07t0630900-02
Chr07	irgsp1_rep	three_prime_UTR	26163124	26163357	.	+	.	Parent=Os07t0630900-02
Chr07	irgsp1_rep	mRNA	26163695	26168069	.	-	.	ID=Os07t0631000-01;Name=Os07t0631000-01;Locus_id=Os07g0631000;Note=Defective in cullin neddylation domain containing protein.;Transcript_evidence=AK066723 (DDBJ%2C Best hit);ORF_evidence=D3U2G2 (UniProt);InterPro=Domain of unknown function DUF298 (IPR005176),Defective-in-cullin neddylation protein (IPR014764);NIAS_FLcDNA=J013088A01;Expression=AK066723;TENOR=Os07t0631000-01;KEGG=Os07t0631000-01
Chr07	irgsp1_rep	five_prime_UTR	26167912	26168069	.	-	.	Parent=Os07t0631000-01
Chr07	irgsp1_rep	CDS	26167827	26167911	.	-	0	Parent=Os07t0631000-01
Chr07	irgsp1_rep	CDS	26167097	26167181	.	-	2	Parent=Os07t0631000-01
Chr07	irgsp1_rep	CDS	26166727	26166775	.	-	1	Parent=Os07t0631000-01
Chr07	irgsp1_rep	CDS	26166567	26166642	.	-	0	Parent=Os07t0631000-01
Chr07	irgsp1_rep	CDS	26166382	26166464	.	-	2	Parent=Os07t0631000-01
Chr07	irgsp1_rep	CDS	26165509	26165605	.	-	0	Parent=Os07t0631000-01
Chr07	irgsp1_rep	CDS	26165335	26165380	.	-	2	Parent=Os07t0631000-01
Chr07	irgsp1_rep	CDS	26164409	26164476	.	-	1	Parent=Os07t0631000-01
Chr07	irgsp1_rep	CDS	26164016	26164332	.	-	2	Parent=Os07t0631000-01
Chr07	irgsp1_rep	three_prime_UTR	26163695	26164015	.	-	.	Parent=Os07t0631000-01
Chr07	irgsp1_rep	mRNA	26169956	26170336	.	-	.	ID=Os07t0631050-00;Name=Os07t0631050-00;Locus_id=Os07g0631050;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8LHP1 (UniProt);TENOR=Os07t0631050-00;KEGG=Os07t0631050-00
Chr07	irgsp1_rep	CDS	26169956	26170336	.	-	0	Parent=Os07t0631050-00
Chr07	irgsp1_rep	mRNA	26169958	26172456	.	+	.	ID=Os07t0631100-01;Name=Os07t0631100-01;Locus_id=Os07g0631100;Note=Protein of unknown function DUF701%2C zinc-binding putative family protein.;Transcript_evidence=AK120972 (DDBJ%2C Best hit);ORF_evidence=B6SX26 (UniProt);InterPro=Protein of unknown function DUF701%2C zinc-binding putative (IPR007808);NIAS_FLcDNA=J023041G12;Expression=AK120972;TENOR=Os07t0631100-01;KEGG=Os07t0631100-01
Chr07	irgsp1_rep	five_prime_UTR	26169958	26170134	.	+	.	Parent=Os07t0631100-01
Chr07	irgsp1_rep	five_prime_UTR	26171121	26171139	.	+	.	Parent=Os07t0631100-01
Chr07	irgsp1_rep	CDS	26171140	26171252	.	+	0	Parent=Os07t0631100-01
Chr07	irgsp1_rep	CDS	26171341	26171411	.	+	1	Parent=Os07t0631100-01
Chr07	irgsp1_rep	CDS	26171969	26171990	.	+	2	Parent=Os07t0631100-01
Chr07	irgsp1_rep	CDS	26172090	26172153	.	+	1	Parent=Os07t0631100-01
Chr07	irgsp1_rep	three_prime_UTR	26172154	26172456	.	+	.	Parent=Os07t0631100-01
Chr07	irgsp1_rep	mRNA	26169958	26172419	.	+	.	ID=Os07t0631100-02;Name=Os07t0631100-02;Locus_id=Os07g0631100;Note=Protein of unknown function DUF701%2C zinc-binding putative family protein.;Transcript_evidence=AK061633 (DDBJ%2C Best hit);ORF_evidence=B6SX26 (UniProt);InterPro=Protein of unknown function DUF701%2C zinc-binding putative (IPR007808);NIAS_FLcDNA=001-036-A04;Expression=AK061633;TENOR=Os07t0631100-02;KEGG=Os07t0631100-02
Chr07	irgsp1_rep	five_prime_UTR	26169958	26170134	.	+	.	Parent=Os07t0631100-02
Chr07	irgsp1_rep	five_prime_UTR	26171125	26171139	.	+	.	Parent=Os07t0631100-02
Chr07	irgsp1_rep	CDS	26171140	26171252	.	+	0	Parent=Os07t0631100-02
Chr07	irgsp1_rep	CDS	26171341	26171411	.	+	1	Parent=Os07t0631100-02
Chr07	irgsp1_rep	CDS	26171969	26171990	.	+	2	Parent=Os07t0631100-02
Chr07	irgsp1_rep	CDS	26172090	26172153	.	+	1	Parent=Os07t0631100-02
Chr07	irgsp1_rep	three_prime_UTR	26172154	26172419	.	+	.	Parent=Os07t0631100-02
Chr07	irgsp1_rep	mRNA	26173595	26174381	.	+	.	ID=Os07t0631200-01;Name=Os07t0631200-01;Locus_id=Os07g0631200;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK120260 (DDBJ%2C Best hit);ORF_evidence=NP_001151645.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J013046F21;Expression=AK120260;TENOR=Os07t0631200-01;KEGG=Os07t0631200-01 (EC:6.3.2.19)
Chr07	irgsp1_rep	five_prime_UTR	26173595	26173673	.	+	.	Parent=Os07t0631200-01
Chr07	irgsp1_rep	CDS	26173674	26174231	.	+	0	Parent=Os07t0631200-01
Chr07	irgsp1_rep	three_prime_UTR	26174232	26174381	.	+	.	Parent=Os07t0631200-01
Chr07	irgsp1_rep	mRNA	26188163	26189948	.	-	.	ID=Os07t0631300-01;Name=Os07t0631300-01;Locus_id=Os07g0631300;Note=Conserved hypothetical protein.;Transcript_evidence=AK063855 (DDBJ%2C Best hit);ORF_evidence=A2X2X4 (UniProt);NIAS_FLcDNA=001-122-D04;Expression=AK063855;TENOR=Os07t0631300-01;KEGG=Os07t0631300-01
Chr07	irgsp1_rep	five_prime_UTR	26189889	26189948	.	-	.	Parent=Os07t0631300-01
Chr07	irgsp1_rep	CDS	26189795	26189888	.	-	0	Parent=Os07t0631300-01
Chr07	irgsp1_rep	CDS	26189635	26189708	.	-	2	Parent=Os07t0631300-01
Chr07	irgsp1_rep	CDS	26188439	26188558	.	-	0	Parent=Os07t0631300-01
Chr07	irgsp1_rep	three_prime_UTR	26188163	26188438	.	-	.	Parent=Os07t0631300-01
Chr07	irgsp1_rep	mRNA	26192824	26194365	.	+	.	ID=Os07t0631500-01;Name=Os07t0631500-01;Locus_id=Os07g0631500;Note=Similar to Mov34/MPN/PAD-1 family protein.;Transcript_evidence=AK243300 (DDBJ%2C Best hit);ORF_evidence=Q53RR0 (UniProt);NIAS_FLcDNA=J100054D21;TENOR=Os07t0631500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	26192824	26194047	.	+	.	Parent=Os07t0631500-01
Chr07	irgsp1_rep	CDS	26194048	26194155	.	+	0	Parent=Os07t0631500-01
Chr07	irgsp1_rep	three_prime_UTR	26194156	26194365	.	+	.	Parent=Os07t0631500-01
Chr07	irgsp1_rep	mRNA	26208537	26209455	.	+	.	ID=Os07t0631700-01;Name=Os07t0631700-01;Locus_id=Os07g0631700;Note=EF-Hand type domain containing protein.;Transcript_evidence=AK105175 (DDBJ%2C Best hit);ORF_evidence=NP_001147544.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=001-104-H09;Expression=AK105175;TENOR=Os07t0631700-01;KEGG=Os07t0631700-01
Chr07	irgsp1_rep	five_prime_UTR	26208537	26208609	.	+	.	Parent=Os07t0631700-01
Chr07	irgsp1_rep	CDS	26208610	26209251	.	+	0	Parent=Os07t0631700-01
Chr07	irgsp1_rep	three_prime_UTR	26209252	26209455	.	+	.	Parent=Os07t0631700-01
Chr07	irgsp1_rep	mRNA	26211749	26213842	.	+	.	ID=Os07t0631900-01;Name=Os07t0631900-01;Locus_id=Os07g0631900;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK061072 (DDBJ%2C Best hit);ORF_evidence=A2YNZ1 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=006-206-D01;Expression=AK061072;TENOR=Os07t0631900-01;KEGG=Os07t0631900-01
Chr07	irgsp1_rep	five_prime_UTR	26211749	26211812	.	+	.	Parent=Os07t0631900-01
Chr07	irgsp1_rep	CDS	26211813	26212142	.	+	0	Parent=Os07t0631900-01
Chr07	irgsp1_rep	CDS	26212655	26212756	.	+	0	Parent=Os07t0631900-01
Chr07	irgsp1_rep	CDS	26213131	26213430	.	+	0	Parent=Os07t0631900-01
Chr07	irgsp1_rep	CDS	26213586	26213648	.	+	0	Parent=Os07t0631900-01
Chr07	irgsp1_rep	three_prime_UTR	26213649	26213842	.	+	.	Parent=Os07t0631900-01
Chr07	irgsp1_rep	mRNA	26213652	26213842	.	+	.	ID=Os07t0631900-02;Name=Os07t0631900-02;Locus_id=Os07g0631900;Note=Non-protein coding transcript.;Transcript_evidence=AK058579 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-017-F05;TENOR=Os07t0631900-02
Chr07	irgsp1_rep	exon	26213652	26213842	.	+	.	Parent=Os07t0631900-02
Chr07	irgsp1_rep	mRNA	26211825	26212748	.	-	.	ID=Os07t0631950-00;Name=Os07t0631950-00;Locus_id=Os07g0631950;Note=Hypothetical gene.;Transcript_evidence=BT087008 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0631950-00;KEGG=Os07t0631950-00
Chr07	irgsp1_rep	five_prime_UTR	26212747	26212748	.	-	.	Parent=Os07t0631950-00
Chr07	irgsp1_rep	CDS	26212667	26212746	.	-	0	Parent=Os07t0631950-00
Chr07	irgsp1_rep	CDS	26211933	26212152	.	-	1	Parent=Os07t0631950-00
Chr07	irgsp1_rep	three_prime_UTR	26211825	26211932	.	-	.	Parent=Os07t0631950-00
Chr07	irgsp1_rep	mRNA	26215095	26216256	.	+	.	ID=Os07t0632000-01;Name=Os07t0632000-01;Locus_id=Os07g0632000;Note=Similar to Xylanase inhibitor protein I precursor.;Transcript_evidence=AK111717 (DDBJ%2C Best hit);ORF_evidence=Q4W6G2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 18%2C catalytic domain (IPR001223),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J023022A01;Expression=AK111717;TENOR=Os07t0632000-01;KEGG=Os07t0632000-01
Chr07	irgsp1_rep	five_prime_UTR	26215095	26215141	.	+	.	Parent=Os07t0632000-01
Chr07	irgsp1_rep	CDS	26215142	26216092	.	+	0	Parent=Os07t0632000-01
Chr07	irgsp1_rep	three_prime_UTR	26216093	26216256	.	+	.	Parent=Os07t0632000-01
Chr07	irgsp1_rep	mRNA	26230671	26240841	.	+	.	ID=Os07t0632600-01;Name=Os07t0632600-01;Locus_id=Os07g0632600;Note=Heat shock protein DnaJ%2C N-terminal domain containing protein.;Transcript_evidence=AK102629 (DDBJ%2C Best hit);ORF_evidence=B9FUE5 (UniProt);GO=Molecular Function: heat shock protein binding (GO:0031072);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=J033099L01;Expression=AK102629;TENOR=Os07t0632600-01;KEGG=Os07t0632600-01
Chr07	irgsp1_rep	five_prime_UTR	26230671	26230952	.	+	.	Parent=Os07t0632600-01
Chr07	irgsp1_rep	five_prime_UTR	26232023	26232112	.	+	.	Parent=Os07t0632600-01
Chr07	irgsp1_rep	CDS	26232113	26232227	.	+	0	Parent=Os07t0632600-01
Chr07	irgsp1_rep	CDS	26232334	26232403	.	+	2	Parent=Os07t0632600-01
Chr07	irgsp1_rep	CDS	26233007	26233049	.	+	1	Parent=Os07t0632600-01
Chr07	irgsp1_rep	CDS	26233468	26233545	.	+	0	Parent=Os07t0632600-01
Chr07	irgsp1_rep	CDS	26233683	26233767	.	+	0	Parent=Os07t0632600-01
Chr07	irgsp1_rep	CDS	26233853	26233935	.	+	2	Parent=Os07t0632600-01
Chr07	irgsp1_rep	CDS	26234069	26234126	.	+	0	Parent=Os07t0632600-01
Chr07	irgsp1_rep	CDS	26234838	26234948	.	+	2	Parent=Os07t0632600-01
Chr07	irgsp1_rep	CDS	26235349	26235406	.	+	2	Parent=Os07t0632600-01
Chr07	irgsp1_rep	CDS	26235585	26235681	.	+	1	Parent=Os07t0632600-01
Chr07	irgsp1_rep	CDS	26236165	26236200	.	+	0	Parent=Os07t0632600-01
Chr07	irgsp1_rep	CDS	26236416	26236552	.	+	0	Parent=Os07t0632600-01
Chr07	irgsp1_rep	CDS	26237413	26237482	.	+	1	Parent=Os07t0632600-01
Chr07	irgsp1_rep	CDS	26237572	26237626	.	+	0	Parent=Os07t0632600-01
Chr07	irgsp1_rep	CDS	26237739	26237881	.	+	2	Parent=Os07t0632600-01
Chr07	irgsp1_rep	CDS	26237991	26238140	.	+	0	Parent=Os07t0632600-01
Chr07	irgsp1_rep	CDS	26238664	26238897	.	+	0	Parent=Os07t0632600-01
Chr07	irgsp1_rep	CDS	26239030	26239089	.	+	0	Parent=Os07t0632600-01
Chr07	irgsp1_rep	CDS	26239554	26239784	.	+	0	Parent=Os07t0632600-01
Chr07	irgsp1_rep	CDS	26240409	26240561	.	+	0	Parent=Os07t0632600-01
Chr07	irgsp1_rep	three_prime_UTR	26240562	26240841	.	+	.	Parent=Os07t0632600-01
Chr07	irgsp1_rep	mRNA	26238092	26240790	.	+	.	ID=Os07t0632600-02;Name=Os07t0632600-02;Locus_id=Os07g0632600;Note=Hypothetical conserved gene.;Transcript_evidence=AK058943 (DDBJ%2C Best hit);ORF_evidence=B9FUE5 (UniProt);NIAS_FLcDNA=001-009-H08;Expression=AK058943;TENOR=Os07t0632600-02;KEGG=Os07t0632600-02
Chr07	irgsp1_rep	five_prime_UTR	26238092	26238092	.	+	.	Parent=Os07t0632600-02
Chr07	irgsp1_rep	CDS	26238093	26238140	.	+	0	Parent=Os07t0632600-02
Chr07	irgsp1_rep	CDS	26238664	26238897	.	+	0	Parent=Os07t0632600-02
Chr07	irgsp1_rep	CDS	26239030	26239089	.	+	0	Parent=Os07t0632600-02
Chr07	irgsp1_rep	CDS	26239554	26239784	.	+	0	Parent=Os07t0632600-02
Chr07	irgsp1_rep	CDS	26240409	26240561	.	+	0	Parent=Os07t0632600-02
Chr07	irgsp1_rep	three_prime_UTR	26240562	26240790	.	+	.	Parent=Os07t0632600-02
Chr07	irgsp1_rep	mRNA	26242533	26245116	.	+	.	ID=Os07t0632700-01;Name=Os07t0632700-01;Locus_id=Os07g0632700;Note=emp24/gp25L/p24 family protein.;Transcript_evidence=AK060066 (DDBJ%2C Best hit);ORF_evidence=NP_001136966.2 (RefSeq);GO=Biological Process: transport (GO:0006810),Cellular Component: integral to membrane (GO:0016021);InterPro=GOLD (IPR009038);NIAS_FLcDNA=006-305-H05;Expression=AK060066;TENOR=Os07t0632700-01;KEGG=Os07t0632700-01
Chr07	irgsp1_rep	five_prime_UTR	26242533	26242613	.	+	.	Parent=Os07t0632700-01
Chr07	irgsp1_rep	CDS	26242614	26242874	.	+	0	Parent=Os07t0632700-01
Chr07	irgsp1_rep	CDS	26243007	26243216	.	+	0	Parent=Os07t0632700-01
Chr07	irgsp1_rep	CDS	26244596	26244672	.	+	0	Parent=Os07t0632700-01
Chr07	irgsp1_rep	CDS	26244776	26244920	.	+	1	Parent=Os07t0632700-01
Chr07	irgsp1_rep	three_prime_UTR	26244921	26245116	.	+	.	Parent=Os07t0632700-01
Chr07	irgsp1_rep	mRNA	26245519	26250364	.	-	.	ID=Os07t0632800-01;Name=Os07t0632800-01;Locus_id=Os07g0632800;Note=Similar to predicted protein.;Transcript_evidence=AK241519 (DDBJ%2C Best hit);ORF_evidence=XP_002890035.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Ankyrin repeat (IPR002110),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J065170E12;TENOR=Os07t0632800-01;KEGG=Os07t0632800-01
Chr07	irgsp1_rep	CDS	26250170	26250364	.	-	0	Parent=Os07t0632800-01
Chr07	irgsp1_rep	CDS	26249419	26249493	.	-	0	Parent=Os07t0632800-01
Chr07	irgsp1_rep	CDS	26248595	26248711	.	-	0	Parent=Os07t0632800-01
Chr07	irgsp1_rep	CDS	26247853	26247947	.	-	0	Parent=Os07t0632800-01
Chr07	irgsp1_rep	CDS	26247529	26247649	.	-	1	Parent=Os07t0632800-01
Chr07	irgsp1_rep	CDS	26247367	26247446	.	-	0	Parent=Os07t0632800-01
Chr07	irgsp1_rep	CDS	26246676	26246735	.	-	1	Parent=Os07t0632800-01
Chr07	irgsp1_rep	CDS	26246476	26246597	.	-	1	Parent=Os07t0632800-01
Chr07	irgsp1_rep	CDS	26246302	26246387	.	-	2	Parent=Os07t0632800-01
Chr07	irgsp1_rep	CDS	26246087	26246202	.	-	0	Parent=Os07t0632800-01
Chr07	irgsp1_rep	CDS	26245848	26245977	.	-	1	Parent=Os07t0632800-01
Chr07	irgsp1_rep	three_prime_UTR	26245519	26245847	.	-	.	Parent=Os07t0632800-01
Chr07	irgsp1_rep	mRNA	26256478	26259188	.	+	.	ID=Os07t0633000-01;Name=Os07t0633000-01;Locus_id=Os07g0633000;Note=Hypothetical conserved gene.;Transcript_evidence=AK287558 (DDBJ%2C Best hit);ORF_evidence=Q7XI51 (UniProt);InterPro=Protein of unknown function DUF1997 (IPR018971);NIAS_FLcDNA=J065022N22;TENOR=Os07t0633000-01;KEGG=Os07t0633000-01
Chr07	irgsp1_rep	five_prime_UTR	26256478	26256554	.	+	.	Parent=Os07t0633000-01
Chr07	irgsp1_rep	CDS	26256555	26256854	.	+	0	Parent=Os07t0633000-01
Chr07	irgsp1_rep	CDS	26256943	26257029	.	+	0	Parent=Os07t0633000-01
Chr07	irgsp1_rep	CDS	26257121	26257228	.	+	0	Parent=Os07t0633000-01
Chr07	irgsp1_rep	CDS	26257357	26257560	.	+	0	Parent=Os07t0633000-01
Chr07	irgsp1_rep	CDS	26258741	26258743	.	+	0	Parent=Os07t0633000-01
Chr07	irgsp1_rep	three_prime_UTR	26258744	26259188	.	+	.	Parent=Os07t0633000-01
Chr07	irgsp1_rep	mRNA	26259266	26263678	.	-	.	ID=Os07t0633100-01;Name=Os07t0633100-01;Locus_id=Os07g0633100;Note=Similar to Glucan endo-1%2C3-beta-glucosidase 4.;Transcript_evidence=AK071223 (DDBJ%2C Best hit);ORF_evidence=B6TL03 (UniProt);InterPro=X8 (IPR012946);NIAS_FLcDNA=J023085L24;TENOR=Os07t0633100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	26263344	26263678	.	-	.	Parent=Os07t0633100-01
Chr07	irgsp1_rep	CDS	26263320	26263343	.	-	0	Parent=Os07t0633100-01
Chr07	irgsp1_rep	CDS	26262009	26262105	.	-	0	Parent=Os07t0633100-01
Chr07	irgsp1_rep	CDS	26260895	26261233	.	-	2	Parent=Os07t0633100-01
Chr07	irgsp1_rep	CDS	26259800	26259827	.	-	2	Parent=Os07t0633100-01
Chr07	irgsp1_rep	CDS	26259476	26259698	.	-	1	Parent=Os07t0633100-01
Chr07	irgsp1_rep	three_prime_UTR	26259266	26259475	.	-	.	Parent=Os07t0633100-01
Chr07	irgsp1_rep	mRNA	26259297	26263068	.	-	.	ID=Os07t0633100-02;Name=Os07t0633100-02;Locus_id=Os07g0633100;Note=Similar to Glucan endo-1%2C3-beta-glucosidase 4.;Transcript_evidence=AK068234 (DDBJ%2C Best hit);ORF_evidence=B6TL03 (UniProt);InterPro=X8 (IPR012946);NIAS_FLcDNA=J013149L16;TENOR=Os07t0633100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	26262793	26263068	.	-	.	Parent=Os07t0633100-02
Chr07	irgsp1_rep	CDS	26262739	26262792	.	-	0	Parent=Os07t0633100-02
Chr07	irgsp1_rep	CDS	26262009	26262105	.	-	0	Parent=Os07t0633100-02
Chr07	irgsp1_rep	CDS	26260895	26261233	.	-	2	Parent=Os07t0633100-02
Chr07	irgsp1_rep	CDS	26259800	26259827	.	-	2	Parent=Os07t0633100-02
Chr07	irgsp1_rep	CDS	26259476	26259698	.	-	1	Parent=Os07t0633100-02
Chr07	irgsp1_rep	three_prime_UTR	26259297	26259475	.	-	.	Parent=Os07t0633100-02
Chr07	irgsp1_rep	mRNA	26259266	26263643	.	-	.	ID=Os07t0633100-03;Name=Os07t0633100-03;Locus_id=Os07g0633100;Note=Similar to Glucan endo-1%2C3-beta-glucosidase 4.;Transcript_evidence=AK104126 (DDBJ%2C Best hit),AK104543 (DDBJ%2C Best hit);ORF_evidence=B6TL03 (UniProt);InterPro=X8 (IPR012946);NIAS_FLcDNA=006-203-D10,006-305-B05;TENOR=Os07t0633100-03
Chr07	irgsp1_rep	five_prime_UTR	26263344	26263643	.	-	.	Parent=Os07t0633100-03
Chr07	irgsp1_rep	CDS	26263320	26263343	.	-	0	Parent=Os07t0633100-03
Chr07	irgsp1_rep	CDS	26262009	26262105	.	-	0	Parent=Os07t0633100-03
Chr07	irgsp1_rep	CDS	26260895	26261233	.	-	2	Parent=Os07t0633100-03
Chr07	irgsp1_rep	CDS	26259800	26259827	.	-	2	Parent=Os07t0633100-03
Chr07	irgsp1_rep	CDS	26259476	26259698	.	-	1	Parent=Os07t0633100-03
Chr07	irgsp1_rep	three_prime_UTR	26259266	26259475	.	-	.	Parent=Os07t0633100-03
Chr07	irgsp1_rep	mRNA	26259266	26263597	.	-	.	ID=Os07t0633100-04;Name=Os07t0633100-04;Locus_id=Os07g0633100;Note=Similar to Glucan endo-1%2C3-beta-glucosidase 4.;Transcript_evidence=AK109428 (DDBJ%2C Best hit);ORF_evidence=B6TL03 (UniProt);InterPro=X8 (IPR012946);NIAS_FLcDNA=006-307-E07;TENOR=Os07t0633100-04
Chr07	irgsp1_rep	five_prime_UTR	26263344	26263597	.	-	.	Parent=Os07t0633100-04
Chr07	irgsp1_rep	CDS	26263320	26263343	.	-	0	Parent=Os07t0633100-04
Chr07	irgsp1_rep	CDS	26262009	26262105	.	-	0	Parent=Os07t0633100-04
Chr07	irgsp1_rep	CDS	26260895	26261233	.	-	2	Parent=Os07t0633100-04
Chr07	irgsp1_rep	CDS	26259800	26259827	.	-	2	Parent=Os07t0633100-04
Chr07	irgsp1_rep	CDS	26259476	26259698	.	-	1	Parent=Os07t0633100-04
Chr07	irgsp1_rep	three_prime_UTR	26259266	26259475	.	-	.	Parent=Os07t0633100-04
Chr07	irgsp1_rep	mRNA	26259266	26263499	.	-	.	ID=Os07t0633100-05;Name=Os07t0633100-05;Locus_id=Os07g0633100;Note=Similar to Glucan endo-1%2C3-beta-glucosidase 4.;Transcript_evidence=AK061455 (DDBJ%2C Best hit);ORF_evidence=B6TL03 (UniProt);InterPro=X8 (IPR012946);NIAS_FLcDNA=006-307-H02;TENOR=Os07t0633100-05
Chr07	irgsp1_rep	five_prime_UTR	26263344	26263499	.	-	.	Parent=Os07t0633100-05
Chr07	irgsp1_rep	CDS	26263320	26263343	.	-	0	Parent=Os07t0633100-05
Chr07	irgsp1_rep	CDS	26262009	26262105	.	-	0	Parent=Os07t0633100-05
Chr07	irgsp1_rep	CDS	26260895	26261233	.	-	2	Parent=Os07t0633100-05
Chr07	irgsp1_rep	CDS	26259800	26259827	.	-	2	Parent=Os07t0633100-05
Chr07	irgsp1_rep	CDS	26259476	26259698	.	-	1	Parent=Os07t0633100-05
Chr07	irgsp1_rep	three_prime_UTR	26259266	26259475	.	-	.	Parent=Os07t0633100-05
Chr07	irgsp1_rep	mRNA	26265494	26268555	.	+	.	ID=Os07t0633200-01;Name=Os07t0633200-01;Locus_id=Os07g0633200;CGSNL Gene Symbol=SCL25;CGSNL Gene Name=SC35-LIKE PROTEIN 25;Oryzabase Gene Symbol Synonym(s)=Os-SCL25%2C OsSCL25;Oryzabase Gene Name Synonym(s)=SC35-like protein 25%2C SCL subfamily protein 25;Note=Similar to SC35-like splicing factor SCL30a%2C 30a kD.;Transcript_evidence=AK073451 (DDBJ%2C Best hit);ORF_evidence=B6U7F9 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033045C19;Oryzabase=22741;Expression=AK073451;TENOR=Os07t0633200-01;KEGG=Os07t0633200-01
Chr07	irgsp1_rep	five_prime_UTR	26265494	26265651	.	+	.	Parent=Os07t0633200-01
Chr07	irgsp1_rep	five_prime_UTR	26266301	26266306	.	+	.	Parent=Os07t0633200-01
Chr07	irgsp1_rep	CDS	26266307	26266455	.	+	0	Parent=Os07t0633200-01
Chr07	irgsp1_rep	CDS	26266982	26267059	.	+	1	Parent=Os07t0633200-01
Chr07	irgsp1_rep	CDS	26267791	26267955	.	+	1	Parent=Os07t0633200-01
Chr07	irgsp1_rep	CDS	26268033	26268134	.	+	1	Parent=Os07t0633200-01
Chr07	irgsp1_rep	CDS	26268241	26268388	.	+	1	Parent=Os07t0633200-01
Chr07	irgsp1_rep	three_prime_UTR	26268389	26268555	.	+	.	Parent=Os07t0633200-01
Chr07	irgsp1_rep	mRNA	26265545	26268672	.	+	.	ID=Os07t0633200-02;Name=Os07t0633200-02;Locus_id=Os07g0633200;CGSNL Gene Symbol=SCL25;CGSNL Gene Name=SC35-LIKE PROTEIN 25;Oryzabase Gene Symbol Synonym(s)=Os-SCL25%2C OsSCL25;Oryzabase Gene Name Synonym(s)=SC35-like protein 25%2C SCL subfamily protein 25;Note=Similar to SC35-like splicing factor SCL30a%2C 30a kD.;Transcript_evidence=AK061338 (DDBJ%2C Best hit);ORF_evidence=B6U7F9 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=006-303-C11;Oryzabase=22741;Expression=AK061338;TENOR=Os07t0633200-02;KEGG=Os07t0633200-02
Chr07	irgsp1_rep	five_prime_UTR	26265545	26265651	.	+	.	Parent=Os07t0633200-02
Chr07	irgsp1_rep	five_prime_UTR	26266301	26266306	.	+	.	Parent=Os07t0633200-02
Chr07	irgsp1_rep	CDS	26266307	26266455	.	+	0	Parent=Os07t0633200-02
Chr07	irgsp1_rep	CDS	26266982	26267059	.	+	1	Parent=Os07t0633200-02
Chr07	irgsp1_rep	CDS	26267791	26267955	.	+	1	Parent=Os07t0633200-02
Chr07	irgsp1_rep	CDS	26268033	26268134	.	+	1	Parent=Os07t0633200-02
Chr07	irgsp1_rep	CDS	26268241	26268388	.	+	1	Parent=Os07t0633200-02
Chr07	irgsp1_rep	three_prime_UTR	26268389	26268672	.	+	.	Parent=Os07t0633200-02
Chr07	irgsp1_rep	mRNA	26271203	26272514	.	+	.	ID=Os07t0633300-00;Name=Os07t0633300-00;Locus_id=Os07g0633300;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XI48 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);TENOR=Os07t0633300-00;KEGG=Os07t0633300-00
Chr07	irgsp1_rep	CDS	26271203	26271950	.	+	0	Parent=Os07t0633300-00
Chr07	irgsp1_rep	CDS	26272015	26272514	.	+	2	Parent=Os07t0633300-00
Chr07	irgsp1_rep	mRNA	26287974	26291065	.	+	.	ID=Os07t0633400-01;Name=Os07t0633400-01;Locus_id=Os07g0633400;Oryzabase Gene Name Synonym(s)=Calmodulin-binding protein;Note=IQ calmodulin-binding region domain containing protein.;Transcript_evidence=AK071894 (DDBJ%2C Best hit);ORF_evidence=NP_187969.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);NIAS_FLcDNA=J013059L02;Oryzabase=23427;Expression=AK071894;TENOR=Os07t0633400-01;KEGG=Os07t0633400-01
Chr07	irgsp1_rep	five_prime_UTR	26287974	26288084	.	+	.	Parent=Os07t0633400-01
Chr07	irgsp1_rep	five_prime_UTR	26288204	26288226	.	+	.	Parent=Os07t0633400-01
Chr07	irgsp1_rep	CDS	26288227	26288606	.	+	0	Parent=Os07t0633400-01
Chr07	irgsp1_rep	CDS	26288692	26288806	.	+	1	Parent=Os07t0633400-01
Chr07	irgsp1_rep	CDS	26288925	26288990	.	+	0	Parent=Os07t0633400-01
Chr07	irgsp1_rep	CDS	26289099	26289187	.	+	0	Parent=Os07t0633400-01
Chr07	irgsp1_rep	CDS	26289297	26289387	.	+	1	Parent=Os07t0633400-01
Chr07	irgsp1_rep	CDS	26289497	26289643	.	+	0	Parent=Os07t0633400-01
Chr07	irgsp1_rep	CDS	26289740	26289832	.	+	0	Parent=Os07t0633400-01
Chr07	irgsp1_rep	CDS	26289953	26290054	.	+	0	Parent=Os07t0633400-01
Chr07	irgsp1_rep	CDS	26290161	26290835	.	+	0	Parent=Os07t0633400-01
Chr07	irgsp1_rep	three_prime_UTR	26290836	26291065	.	+	.	Parent=Os07t0633400-01
Chr07	irgsp1_rep	mRNA	26289912	26290787	.	-	.	ID=Os07t0633450-00;Name=Os07t0633450-00;Locus_id=Os07g0633450;Note=Hypothetical gene.;Transcript_evidence=EU947431 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0633450-00
Chr07	irgsp1_rep	five_prime_UTR	26290340	26290787	.	-	.	Parent=Os07t0633450-00
Chr07	irgsp1_rep	CDS	26289912	26290339	.	-	0	Parent=Os07t0633450-00
Chr07	irgsp1_rep	mRNA	26292187	26296295	.	-	.	ID=Os07t0633500-01;Name=Os07t0633500-01;Locus_id=Os07g0633500;RAP-DB Gene Symbol Synonym(s)=OsRH36;RAP-DB Gene Name Synonym(s)=RNA helicase 36;Oryzabase Gene Symbol Synonym(s)=OsRH36;Oryzabase Gene Name Synonym(s)=RNA helicase 36;Note=DEAD-box protein%2C DEAD-box RNA helicase%2C rRNA biogenesis%2C Gametophyte development;Transcript_evidence=XM_015791802,Inferred from literature;ORF_evidence=Q8L4E9;GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: ATP binding (GO:0005524);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014),Helicase superfamily 1/2%2C ATP-binding domain (IPR014001),DEAD/DEAH box helicase domain (IPR011545),Helicase%2C C-terminal (IPR001650),ATP-dependent RNA helicase DEAD-box%2C conserved site (IPR000629);Manual Curation=November 2%2C 2020;Literature_PMID=20607362;Oryzabase=19146;TENOR=Os07t0633500-00;KEGG=Os07t0633500-00;Subcellular location=nucleus (GO:0005634),nucleolus (GO:0005730)
Chr07	irgsp1_rep	five_prime_UTR	26296156	26296295	.	-	.	Parent=Os07t0633500-01
Chr07	irgsp1_rep	CDS	26295484	26296155	.	-	0	Parent=Os07t0633500-01
Chr07	irgsp1_rep	CDS	26293940	26294262	.	-	0	Parent=Os07t0633500-01
Chr07	irgsp1_rep	CDS	26293405	26293608	.	-	1	Parent=Os07t0633500-01
Chr07	irgsp1_rep	CDS	26293216	26293300	.	-	1	Parent=Os07t0633500-01
Chr07	irgsp1_rep	CDS	26292717	26292815	.	-	0	Parent=Os07t0633500-01
Chr07	irgsp1_rep	CDS	26292465	26292587	.	-	0	Parent=Os07t0633500-01
Chr07	irgsp1_rep	three_prime_UTR	26292187	26292464	.	-	.	Parent=Os07t0633500-01
Chr07	irgsp1_rep	mRNA	26298359	26300541	.	-	.	ID=Os07t0633600-01;Name=Os07t0633600-01;Locus_id=Os07g0633600;Note=Similar to SUB1%3B calcium ion binding.;Transcript_evidence=AK067310 (DDBJ%2C Best hit);ORF_evidence=NP_192621.1 (RefSeq);NIAS_FLcDNA=J013102E11;Expression=AK067310;TENOR=Os07t0633600-01;KEGG=Os07t0633600-01
Chr07	irgsp1_rep	five_prime_UTR	26300443	26300541	.	-	.	Parent=Os07t0633600-01
Chr07	irgsp1_rep	CDS	26298685	26300442	.	-	0	Parent=Os07t0633600-01
Chr07	irgsp1_rep	three_prime_UTR	26298359	26298684	.	-	.	Parent=Os07t0633600-01
Chr07	irgsp1_rep	mRNA	26298446	26299049	.	-	.	ID=Os07t0633600-02;Name=Os07t0633600-02;Locus_id=Os07g0633600;Note=Similar to SUB1 (short under blue light 1).;Transcript_evidence=AK061698 (DDBJ%2C Best hit);ORF_evidence=NP_192621.1 (RefSeq);NIAS_FLcDNA=001-037-D04;Expression=AK061698;TENOR=Os07t0633600-02;KEGG=Os07t0633600-02
Chr07	irgsp1_rep	five_prime_UTR	26299048	26299049	.	-	.	Parent=Os07t0633600-02
Chr07	irgsp1_rep	CDS	26298685	26299047	.	-	0	Parent=Os07t0633600-02
Chr07	irgsp1_rep	three_prime_UTR	26298446	26298684	.	-	.	Parent=Os07t0633600-02
Chr07	irgsp1_rep	mRNA	26302466	26306042	.	+	.	ID=Os07t0633800-01;Name=Os07t0633800-01;Locus_id=Os07g0633800;Note=Similar to BNS (BONSAI).;Transcript_evidence=AK103878 (DDBJ%2C Best hit);ORF_evidence=NP_565057.1 (RefSeq);InterPro=Apc13p (IPR008401);NIAS_FLcDNA=J033149N11;Expression=AK103878;TENOR=Os07t0633800-01;KEGG=Os07t0633800-01
Chr07	irgsp1_rep	five_prime_UTR	26302466	26302546	.	+	.	Parent=Os07t0633800-01
Chr07	irgsp1_rep	CDS	26302547	26302640	.	+	0	Parent=Os07t0633800-01
Chr07	irgsp1_rep	CDS	26302728	26302790	.	+	2	Parent=Os07t0633800-01
Chr07	irgsp1_rep	CDS	26303307	26303368	.	+	2	Parent=Os07t0633800-01
Chr07	irgsp1_rep	three_prime_UTR	26303369	26303386	.	+	.	Parent=Os07t0633800-01
Chr07	irgsp1_rep	three_prime_UTR	26305748	26306042	.	+	.	Parent=Os07t0633800-01
Chr07	irgsp1_rep	mRNA	26309356	26311736	.	-	.	ID=Os07t0634000-00;Name=Os07t0634000-00;Locus_id=Os07g0634000;Oryzabase Gene Symbol Synonym(s)=OsEnS-112;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 112;Note=Similar to F5O11.19%2C related.;Transcript_evidence=BT083791 (DDBJ);ORF_evidence=Q2HSS2 (UniProt);InterPro=SNARE associated Golgi protein (IPR015414);Oryzabase=18411;TENOR=Os07t0634000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	26311056	26311736	.	-	0	Parent=Os07t0634000-00
Chr07	irgsp1_rep	CDS	26310130	26310366	.	-	0	Parent=Os07t0634000-00
Chr07	irgsp1_rep	CDS	26309774	26309994	.	-	0	Parent=Os07t0634000-00
Chr07	irgsp1_rep	CDS	26309356	26309623	.	-	1	Parent=Os07t0634000-00
Chr07	irgsp1_rep	mRNA	26313135	26315302	.	-	.	ID=Os07t0634100-00;Name=Os07t0634100-00;Locus_id=Os07g0634100;Oryzabase Gene Name Synonym(s)=Hypothetical conserved gene;Note=Conserved hypothetical protein.;Transcript_evidence=AK373277 (DDBJ);ORF_evidence=NP_001060378.1 (RefSeq);Oryzabase=22017;TENOR=Os07t0634100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	26315244	26315302	.	-	.	Parent=Os07t0634100-00
Chr07	irgsp1_rep	CDS	26315135	26315243	.	-	0	Parent=Os07t0634100-00
Chr07	irgsp1_rep	CDS	26314712	26314914	.	-	2	Parent=Os07t0634100-00
Chr07	irgsp1_rep	CDS	26314374	26314612	.	-	0	Parent=Os07t0634100-00
Chr07	irgsp1_rep	CDS	26313612	26314272	.	-	1	Parent=Os07t0634100-00
Chr07	irgsp1_rep	CDS	26313433	26313519	.	-	0	Parent=Os07t0634100-00
Chr07	irgsp1_rep	CDS	26313194	26313319	.	-	0	Parent=Os07t0634100-00
Chr07	irgsp1_rep	three_prime_UTR	26313135	26313193	.	-	.	Parent=Os07t0634100-00
Chr07	irgsp1_rep	mRNA	26321294	26324120	.	+	.	ID=Os07t0634200-01;Name=Os07t0634200-01;Locus_id=Os07g0634200;Oryzabase Gene Symbol Synonym(s)=OsRab11G1;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab11G1;Note=Similar to Rab GTP-binding protein Rab11a.;Transcript_evidence=AK102491 (DDBJ%2C Best hit);ORF_evidence=B4FEP4 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: intracellular protein transport (GO:0006886),Biological Process: nucleocytoplasmic transport (GO:0006913),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Cellular Component: membrane (GO:0016020),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Ran GTPase (IPR002041),Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C Ras type (IPR020849);NIAS_FLcDNA=J033094O19;Oryzabase=11108;Expression=AK102491;TENOR=Os07t0634200-01;KEGG=Os07t0634200-01
Chr07	irgsp1_rep	five_prime_UTR	26321294	26321552	.	+	.	Parent=Os07t0634200-01
Chr07	irgsp1_rep	five_prime_UTR	26322713	26322765	.	+	.	Parent=Os07t0634200-01
Chr07	irgsp1_rep	CDS	26322766	26323105	.	+	0	Parent=Os07t0634200-01
Chr07	irgsp1_rep	CDS	26323307	26323629	.	+	2	Parent=Os07t0634200-01
Chr07	irgsp1_rep	three_prime_UTR	26323630	26323634	.	+	.	Parent=Os07t0634200-01
Chr07	irgsp1_rep	three_prime_UTR	26323792	26324120	.	+	.	Parent=Os07t0634200-01
Chr07	irgsp1_rep	mRNA	26322801	26323511	.	-	.	ID=Os07t0634250-00;Name=Os07t0634250-00;Locus_id=Os07g0634250;Note=Non-protein coding transcript.;Transcript_evidence=BT084300 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0634250-00
Chr07	irgsp1_rep	exon	26323332	26323511	.	-	.	Parent=Os07t0634250-00
Chr07	irgsp1_rep	exon	26322801	26323123	.	-	.	Parent=Os07t0634250-00
Chr07	irgsp1_rep	mRNA	26325130	26326643	.	-	.	ID=Os07t0634300-01;Name=Os07t0634300-01;Locus_id=Os07g0634300;Note=Similar to Low temperature viability protein.;Transcript_evidence=AK109879 (DDBJ%2C Best hit);ORF_evidence=B6TGN3 (UniProt);NIAS_FLcDNA=002-149-C09;Expression=AK109879;TENOR=Os07t0634300-01;KEGG=Os07t0634300-01
Chr07	irgsp1_rep	five_prime_UTR	26326563	26326643	.	-	.	Parent=Os07t0634300-01
Chr07	irgsp1_rep	CDS	26326149	26326562	.	-	0	Parent=Os07t0634300-01
Chr07	irgsp1_rep	CDS	26325703	26326065	.	-	0	Parent=Os07t0634300-01
Chr07	irgsp1_rep	three_prime_UTR	26325130	26325702	.	-	.	Parent=Os07t0634300-01
Chr07	irgsp1_rep	mRNA	26327405	26329772	.	-	.	ID=Os07t0634400-01;Name=Os07t0634400-01;Locus_id=Os07g0634400;Note=HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 domain containing protein.;Transcript_evidence=AK243228 (DDBJ%2C Best hit);ORF_evidence=B6TQ05 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity (GO:0016787);InterPro=Haloacid dehalogenase-like hydrolase (IPR005834),HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 (IPR006402),Pyrimidine 5-nucleotidase (IPR010237),HAD-like domain (IPR023214);NIAS_FLcDNA=J100044F19;TENOR=Os07t0634400-01;KEGG=Os07t0634400-01
Chr07	irgsp1_rep	five_prime_UTR	26329734	26329772	.	-	.	Parent=Os07t0634400-01
Chr07	irgsp1_rep	five_prime_UTR	26328976	26328995	.	-	.	Parent=Os07t0634400-01
Chr07	irgsp1_rep	CDS	26328930	26328975	.	-	0	Parent=Os07t0634400-01
Chr07	irgsp1_rep	CDS	26328780	26328845	.	-	2	Parent=Os07t0634400-01
Chr07	irgsp1_rep	CDS	26328592	26328689	.	-	2	Parent=Os07t0634400-01
Chr07	irgsp1_rep	CDS	26328371	26328496	.	-	0	Parent=Os07t0634400-01
Chr07	irgsp1_rep	CDS	26327975	26328232	.	-	0	Parent=Os07t0634400-01
Chr07	irgsp1_rep	CDS	26327644	26327883	.	-	0	Parent=Os07t0634400-01
Chr07	irgsp1_rep	three_prime_UTR	26327405	26327643	.	-	.	Parent=Os07t0634400-01
Chr07	irgsp1_rep	mRNA	26340582	26344345	.	+	.	ID=Os07t0634600-01;Name=Os07t0634600-01;Locus_id=Os07g0634600;Note=Similar to Pectin acetylesterase (Fragment).;Transcript_evidence=AK065122 (DDBJ%2C Best hit);ORF_evidence=Q2HRU2 (UniProt);InterPro=Pectinacetylesterase (IPR004963);NIAS_FLcDNA=J013001O22;Expression=AK065122;TENOR=Os07t0634600-01;KEGG=Os07t0634600-01
Chr07	irgsp1_rep	five_prime_UTR	26340582	26340703	.	+	.	Parent=Os07t0634600-01
Chr07	irgsp1_rep	CDS	26340704	26340878	.	+	0	Parent=Os07t0634600-01
Chr07	irgsp1_rep	CDS	26341505	26341587	.	+	2	Parent=Os07t0634600-01
Chr07	irgsp1_rep	CDS	26341721	26341850	.	+	0	Parent=Os07t0634600-01
Chr07	irgsp1_rep	CDS	26341949	26342022	.	+	2	Parent=Os07t0634600-01
Chr07	irgsp1_rep	CDS	26342377	26342463	.	+	0	Parent=Os07t0634600-01
Chr07	irgsp1_rep	CDS	26342556	26342680	.	+	0	Parent=Os07t0634600-01
Chr07	irgsp1_rep	CDS	26342812	26342872	.	+	1	Parent=Os07t0634600-01
Chr07	irgsp1_rep	CDS	26343047	26343100	.	+	0	Parent=Os07t0634600-01
Chr07	irgsp1_rep	CDS	26343186	26343263	.	+	0	Parent=Os07t0634600-01
Chr07	irgsp1_rep	CDS	26343365	26343470	.	+	0	Parent=Os07t0634600-01
Chr07	irgsp1_rep	CDS	26343558	26343703	.	+	2	Parent=Os07t0634600-01
Chr07	irgsp1_rep	CDS	26343844	26343960	.	+	0	Parent=Os07t0634600-01
Chr07	irgsp1_rep	three_prime_UTR	26343961	26344345	.	+	.	Parent=Os07t0634600-01
Chr07	irgsp1_rep	mRNA	26342415	26344330	.	+	.	ID=Os07t0634600-02;Name=Os07t0634600-02;Locus_id=Os07g0634600;Note=Similar to predicted protein.;Transcript_evidence=AK060807 (DDBJ%2C Best hit);ORF_evidence=Q153F8 (UniProt);InterPro=Pectinacetylesterase (IPR004963);NIAS_FLcDNA=001-033-G03;Expression=AK060807;TENOR=Os07t0634600-02;KEGG=Os07t0634600-02
Chr07	irgsp1_rep	five_prime_UTR	26342415	26342415	.	+	.	Parent=Os07t0634600-02
Chr07	irgsp1_rep	CDS	26342416	26342463	.	+	0	Parent=Os07t0634600-02
Chr07	irgsp1_rep	CDS	26342556	26342680	.	+	0	Parent=Os07t0634600-02
Chr07	irgsp1_rep	CDS	26342812	26343028	.	+	1	Parent=Os07t0634600-02
Chr07	irgsp1_rep	three_prime_UTR	26343029	26343470	.	+	.	Parent=Os07t0634600-02
Chr07	irgsp1_rep	three_prime_UTR	26343558	26343703	.	+	.	Parent=Os07t0634600-02
Chr07	irgsp1_rep	three_prime_UTR	26343844	26344330	.	+	.	Parent=Os07t0634600-02
Chr07	irgsp1_rep	mRNA	26355834	26357843	.	+	.	ID=Os07t0634900-00;Name=Os07t0634900-00;Locus_id=Os07g0634900;Oryzabase Gene Symbol Synonym(s)=OsMYB86;Oryzabase Gene Name Synonym(s)=myb transcription factor 86%2C transcription factor MYB86;Note=Hypothetical conserved gene.;Transcript_evidence=CT836172 (DDBJ%2C Best hit);ORF_evidence=A3BMJ9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),MYB-like (IPR017877);Oryzabase=19907;TENOR=Os07t0634900-00;KEGG=Os07t0634900-00
Chr07	irgsp1_rep	five_prime_UTR	26355834	26355835	.	+	.	Parent=Os07t0634900-00
Chr07	irgsp1_rep	CDS	26355836	26356155	.	+	0	Parent=Os07t0634900-00
Chr07	irgsp1_rep	CDS	26356708	26357473	.	+	1	Parent=Os07t0634900-00
Chr07	irgsp1_rep	three_prime_UTR	26357474	26357843	.	+	.	Parent=Os07t0634900-00
Chr07	irgsp1_rep	mRNA	26367084	26369068	.	-	.	ID=Os07t0635150-01;Name=Os07t0635150-01;Locus_id=Os07g0635150;Note=Hypothetical gene.;Transcript_evidence=AK240694 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J043009A10;TENOR=Os07t0635150-01;KEGG=Os07t0635150-01
Chr07	irgsp1_rep	five_prime_UTR	26368803	26369068	.	-	.	Parent=Os07t0635150-01
Chr07	irgsp1_rep	CDS	26368119	26368802	.	-	0	Parent=Os07t0635150-01
Chr07	irgsp1_rep	three_prime_UTR	26367647	26368118	.	-	.	Parent=Os07t0635150-01
Chr07	irgsp1_rep	three_prime_UTR	26367084	26367526	.	-	.	Parent=Os07t0635150-01
Chr07	irgsp1_rep	mRNA	26367250	26368932	.	+	.	ID=Os07t0635200-00;Name=Os07t0635200-00;Locus_id=Os07g0635200;Note=CytoChrome P450%2C E-class%2C group I domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6T485 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os07t0635200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	26367250	26367526	.	+	0	Parent=Os07t0635200-00
Chr07	irgsp1_rep	CDS	26367647	26368932	.	+	2	Parent=Os07t0635200-00
Chr07	irgsp1_rep	mRNA	26375648	26377615	.	+	.	ID=Os07t0635300-01;Name=Os07t0635300-01;Locus_id=Os07g0635300;Note=Similar to CytoChrome P450.;Transcript_evidence=AK241385 (DDBJ%2C Best hit);ORF_evidence=Q6T485 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J065156D02;Oryzabase=22501;TENOR=Os07t0635300-01;KEGG=Os07t0635300-01
Chr07	irgsp1_rep	five_prime_UTR	26375648	26375841	.	+	.	Parent=Os07t0635300-01
Chr07	irgsp1_rep	CDS	26375842	26376028	.	+	0	Parent=Os07t0635300-01
Chr07	irgsp1_rep	CDS	26376124	26377412	.	+	2	Parent=Os07t0635300-01
Chr07	irgsp1_rep	three_prime_UTR	26377413	26377615	.	+	.	Parent=Os07t0635300-01
Chr07	irgsp1_rep	mRNA	26382584	26384642	.	+	.	ID=Os07t0635500-01;Name=Os07t0635500-01;Locus_id=Os07g0635500;CGSNL Gene Symbol=CYP709C5;CGSNL Gene Name=CYTOCHROME P450 709C5;Oryzabase Gene Symbol Synonym(s)=OsCYP709C5;Oryzabase Gene Name Synonym(s)=CytoChrome P450 709C5;Note=Similar to CytoChrome P450.;Transcript_evidence=AK121733 (DDBJ%2C Best hit),AK106081 (DDBJ%2C Best hit);ORF_evidence=Q6T485 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J033083C10,001-207-A08;Oryzabase=21842;TENOR=Os07t0635500-01
Chr07	irgsp1_rep	five_prime_UTR	26382584	26382758	.	+	.	Parent=Os07t0635500-01
Chr07	irgsp1_rep	CDS	26382759	26383035	.	+	0	Parent=Os07t0635500-01
Chr07	irgsp1_rep	CDS	26383182	26384458	.	+	2	Parent=Os07t0635500-01
Chr07	irgsp1_rep	three_prime_UTR	26384459	26384642	.	+	.	Parent=Os07t0635500-01
Chr07	irgsp1_rep	mRNA	26387847	26389928	.	+	.	ID=Os07t0635600-01;Name=Os07t0635600-01;Locus_id=Os07g0635600;Note=Hypothetical conserved gene.;Transcript_evidence=AK119502 (DDBJ%2C Best hit),AK242327 (DDBJ%2C Best hit);ORF_evidence=B8A9Q2 (UniProt);NIAS_FLcDNA=001-134-E10,J075197N21;Expression=AK119502;TENOR=Os07t0635600-01;KEGG=Os07t0635600-01
Chr07	irgsp1_rep	five_prime_UTR	26387847	26388183	.	+	.	Parent=Os07t0635600-01
Chr07	irgsp1_rep	CDS	26388184	26388384	.	+	0	Parent=Os07t0635600-01
Chr07	irgsp1_rep	three_prime_UTR	26388385	26389928	.	+	.	Parent=Os07t0635600-01
Chr07	irgsp1_rep	mRNA	26394225	26396629	.	+	.	ID=Os07t0635700-00;Name=Os07t0635700-00;Locus_id=Os07g0635700;Note=CytoChrome P450 family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6T485 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os07t0635700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	26394225	26394501	.	+	0	Parent=Os07t0635700-00
Chr07	irgsp1_rep	CDS	26394583	26394806	.	+	2	Parent=Os07t0635700-00
Chr07	irgsp1_rep	CDS	26394895	26395142	.	+	0	Parent=Os07t0635700-00
Chr07	irgsp1_rep	CDS	26395202	26395631	.	+	1	Parent=Os07t0635700-00
Chr07	irgsp1_rep	CDS	26396210	26396629	.	+	0	Parent=Os07t0635700-00
Chr07	irgsp1_rep	mRNA	26397495	26399612	.	+	.	ID=Os07t0635800-00;Name=Os07t0635800-00;Locus_id=Os07g0635800;Oryzabase Gene Symbol Synonym(s)=PPR;Oryzabase Gene Name Synonym(s)=Pentatricopeptide repeat (PPR) protein;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001060389.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);Oryzabase=22515;TENOR=Os07t0635800-00;KEGG=Os07t0635800-00
Chr07	irgsp1_rep	CDS	26397495	26399612	.	+	0	Parent=Os07t0635800-00
Chr07	irgsp1_rep	mRNA	26403675	26404722	.	+	.	ID=Os07t0635900-01;Name=Os07t0635900-01;Locus_id=Os07g0635900;Oryzabase Gene Symbol Synonym(s)=OsLti6a%2C Lti6a%2C OsLTI6A%2C OsRCI2-10;Oryzabase Gene Name Synonym(s)=low temperature-induced low molecular weight integral membrane protein LTI6a%2C low temperature induced gene 6a%2C rare cold-inducible 2-10;Note=Hydrophobic protein LTI6A (Low temperature-induced protein 6A).;Transcript_evidence=AK121089 (DDBJ%2C Best hit);ORF_evidence=A2YP22 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Proteolipid membrane potential modulator (IPR000612);NIAS_FLcDNA=J023065L15;Oryzabase=11369;Expression=AK121089;TENOR=Os07t0635900-01;KEGG=Os07t0635900-01
Chr07	irgsp1_rep	five_prime_UTR	26403675	26403799	.	+	.	Parent=Os07t0635900-01
Chr07	irgsp1_rep	CDS	26403800	26403886	.	+	0	Parent=Os07t0635900-01
Chr07	irgsp1_rep	CDS	26404002	26404085	.	+	0	Parent=Os07t0635900-01
Chr07	irgsp1_rep	three_prime_UTR	26404086	26404109	.	+	.	Parent=Os07t0635900-01
Chr07	irgsp1_rep	three_prime_UTR	26404409	26404722	.	+	.	Parent=Os07t0635900-01
Chr07	irgsp1_rep	mRNA	26406702	26408800	.	-	.	ID=Os07t0636000-01;Name=Os07t0636000-01;Locus_id=Os07g0636000;Note=Similar to H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-) (Nucleolar protein NAP57 homolog) (Nopp-140 associated protein of 57 kDa homolog) (AtNAP57).;Transcript_evidence=AK102460 (DDBJ%2C Best hit);ORF_evidence=NP_191274.1 (RefSeq);GO=Biological Process: pseudouridine synthesis (GO:0001522),Biological Process: RNA processing (GO:0006396),Biological Process: RNA modification (GO:0009451),Molecular Function: RNA binding (GO:0003723),Molecular Function: pseudouridine synthase activity (GO:0009982);InterPro=Pseudouridine synthase/archaeosine transglycosylase (IPR002478),Pseudouridine synthase II (IPR002501),Uncharacterised domain CHP00451 (IPR004521),Pseudouridine synthase-related (IPR004802),Dyskerin-like (IPR012960),PUA-like domain (IPR015947),Pseudouridine synthase%2C catalytic domain (IPR020103);NIAS_FLcDNA=J033094C11;Expression=AK102460;TENOR=Os07t0636000-01;KEGG=Os07t0636000-01 (EC:5.4.99.-)
Chr07	irgsp1_rep	five_prime_UTR	26408772	26408800	.	-	.	Parent=Os07t0636000-01
Chr07	irgsp1_rep	CDS	26406969	26408771	.	-	0	Parent=Os07t0636000-01
Chr07	irgsp1_rep	three_prime_UTR	26406702	26406968	.	-	.	Parent=Os07t0636000-01
Chr07	irgsp1_rep	mRNA	26412975	26414449	.	+	.	ID=Os07t0636100-01;Name=Os07t0636100-01;Locus_id=Os07g0636100;Note=Protein of unknown function DUF573 family protein.;Transcript_evidence=AK068356 (DDBJ%2C Best hit);ORF_evidence=Q7XIX8 (UniProt);InterPro=Protein of unknown function DUF573 (IPR007592);NIAS_FLcDNA=J013146D06;Expression=AK068356;TENOR=Os07t0636100-01;KEGG=Os07t0636100-01
Chr07	irgsp1_rep	five_prime_UTR	26412975	26412998	.	+	.	Parent=Os07t0636100-01
Chr07	irgsp1_rep	CDS	26412999	26413638	.	+	0	Parent=Os07t0636100-01
Chr07	irgsp1_rep	CDS	26413818	26413933	.	+	2	Parent=Os07t0636100-01
Chr07	irgsp1_rep	three_prime_UTR	26413934	26414449	.	+	.	Parent=Os07t0636100-01
Chr07	irgsp1_rep	mRNA	26416970	26429287	.	+	.	ID=Os07t0636200-01;Name=Os07t0636200-01;Locus_id=Os07g0636200;RAP-DB Gene Symbol Synonym(s)=CHR721;Note=Nuclear protein belonging to the SNF2 subfamily SMARCAL1%2C  Chromatin remodeler%2C Regulation of both male and female reproductive development;Transcript_evidence=AK069020;ORF_evidence=Q69WP6;GO=Molecular Function: ATP binding (GO:0005524);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),SNF2-like%2C N-terminal domain superfamily (IPR038718),HARP domain (IPR010003),Helicase superfamily 1/2%2C ATP-binding domain (IPR014001),SNF2-related%2C N-terminal domain (IPR000330),Helicase%2C C-terminal (IPR001650);NIAS_FLcDNA=J013169J18;Manual Curation=April 9%2C 2020;Literature_PMID=32266647;Expression=AK069020;TENOR=Os07t0636200-01;KEGG=Os07t0636200-01;Subcellular location=nucleus (GO:0005634)
Chr07	irgsp1_rep	five_prime_UTR	26416970	26416976	.	+	.	Parent=Os07t0636200-01
Chr07	irgsp1_rep	CDS	26416977	26417357	.	+	0	Parent=Os07t0636200-01
Chr07	irgsp1_rep	CDS	26419001	26419055	.	+	0	Parent=Os07t0636200-01
Chr07	irgsp1_rep	CDS	26419133	26419224	.	+	2	Parent=Os07t0636200-01
Chr07	irgsp1_rep	CDS	26419312	26419367	.	+	0	Parent=Os07t0636200-01
Chr07	irgsp1_rep	CDS	26419606	26419681	.	+	1	Parent=Os07t0636200-01
Chr07	irgsp1_rep	CDS	26420370	26420436	.	+	0	Parent=Os07t0636200-01
Chr07	irgsp1_rep	CDS	26420777	26420843	.	+	2	Parent=Os07t0636200-01
Chr07	irgsp1_rep	CDS	26421856	26421922	.	+	1	Parent=Os07t0636200-01
Chr07	irgsp1_rep	CDS	26422339	26422422	.	+	0	Parent=Os07t0636200-01
Chr07	irgsp1_rep	CDS	26422515	26422556	.	+	0	Parent=Os07t0636200-01
Chr07	irgsp1_rep	CDS	26423329	26423484	.	+	0	Parent=Os07t0636200-01
Chr07	irgsp1_rep	CDS	26424221	26424298	.	+	0	Parent=Os07t0636200-01
Chr07	irgsp1_rep	CDS	26424903	26424971	.	+	0	Parent=Os07t0636200-01
Chr07	irgsp1_rep	CDS	26425056	26425121	.	+	0	Parent=Os07t0636200-01
Chr07	irgsp1_rep	CDS	26425203	26425331	.	+	0	Parent=Os07t0636200-01
Chr07	irgsp1_rep	CDS	26425944	26426000	.	+	0	Parent=Os07t0636200-01
Chr07	irgsp1_rep	CDS	26426442	26426531	.	+	0	Parent=Os07t0636200-01
Chr07	irgsp1_rep	CDS	26426886	26426951	.	+	0	Parent=Os07t0636200-01
Chr07	irgsp1_rep	CDS	26427348	26427416	.	+	0	Parent=Os07t0636200-01
Chr07	irgsp1_rep	CDS	26427483	26427587	.	+	0	Parent=Os07t0636200-01
Chr07	irgsp1_rep	CDS	26427954	26428079	.	+	0	Parent=Os07t0636200-01
Chr07	irgsp1_rep	CDS	26428267	26428325	.	+	0	Parent=Os07t0636200-01
Chr07	irgsp1_rep	CDS	26428412	26428448	.	+	1	Parent=Os07t0636200-01
Chr07	irgsp1_rep	CDS	26428950	26429099	.	+	0	Parent=Os07t0636200-01
Chr07	irgsp1_rep	three_prime_UTR	26429100	26429287	.	+	.	Parent=Os07t0636200-01
Chr07	irgsp1_rep	mRNA	26422336	26429287	.	+	.	ID=Os07t0636200-02;Name=Os07t0636200-02;Locus_id=Os07g0636200;CGSNL Gene Symbol=CHR721;Oryzabase Gene Symbol Synonym(s)=OsCHR721%2C SMARCAL1%2C OsSMARCAL1;Note=Similar to Chromatin remodeling complex subunit.;Transcript_evidence=AK066811 (DDBJ%2C Best hit);ORF_evidence=XP_002315473.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524);InterPro=SNF2-related (IPR000330),Helicase%2C C-terminal (IPR001650),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J013088E08;Oryzabase=23583;Expression=AK066811;TENOR=Os07t0636200-02;KEGG=Os07t0636200-02
Chr07	irgsp1_rep	CDS	26422336	26422422	.	+	0	Parent=Os07t0636200-02
Chr07	irgsp1_rep	CDS	26422515	26422556	.	+	0	Parent=Os07t0636200-02
Chr07	irgsp1_rep	CDS	26423329	26423484	.	+	0	Parent=Os07t0636200-02
Chr07	irgsp1_rep	CDS	26424221	26424298	.	+	0	Parent=Os07t0636200-02
Chr07	irgsp1_rep	CDS	26424903	26424971	.	+	0	Parent=Os07t0636200-02
Chr07	irgsp1_rep	CDS	26425056	26425121	.	+	0	Parent=Os07t0636200-02
Chr07	irgsp1_rep	CDS	26425203	26425331	.	+	0	Parent=Os07t0636200-02
Chr07	irgsp1_rep	CDS	26425944	26426000	.	+	0	Parent=Os07t0636200-02
Chr07	irgsp1_rep	CDS	26426442	26426531	.	+	0	Parent=Os07t0636200-02
Chr07	irgsp1_rep	CDS	26426886	26426951	.	+	0	Parent=Os07t0636200-02
Chr07	irgsp1_rep	CDS	26427348	26427416	.	+	0	Parent=Os07t0636200-02
Chr07	irgsp1_rep	CDS	26427483	26427587	.	+	0	Parent=Os07t0636200-02
Chr07	irgsp1_rep	CDS	26427954	26428079	.	+	0	Parent=Os07t0636200-02
Chr07	irgsp1_rep	CDS	26428267	26428325	.	+	0	Parent=Os07t0636200-02
Chr07	irgsp1_rep	CDS	26428412	26428448	.	+	1	Parent=Os07t0636200-02
Chr07	irgsp1_rep	CDS	26428950	26429099	.	+	0	Parent=Os07t0636200-02
Chr07	irgsp1_rep	three_prime_UTR	26429100	26429287	.	+	.	Parent=Os07t0636200-02
Chr07	irgsp1_rep	mRNA	26424236	26429287	.	+	.	ID=Os07t0636200-03;Name=Os07t0636200-03;Locus_id=Os07g0636200;CGSNL Gene Symbol=CHR721;Oryzabase Gene Symbol Synonym(s)=OsCHR721%2C SMARCAL1%2C OsSMARCAL1;Note=Similar to Chromatin remodeling complex subunit.;Transcript_evidence=AK104850 (DDBJ%2C Best hit);ORF_evidence=XP_002315473.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524);InterPro=SNF2-related (IPR000330),Helicase%2C C-terminal (IPR001650);NIAS_FLcDNA=001-043-A07;Oryzabase=23583;Expression=AK104850;TENOR=Os07t0636200-03;KEGG=Os07t0636200-03
Chr07	irgsp1_rep	CDS	26424236	26424298	.	+	0	Parent=Os07t0636200-03
Chr07	irgsp1_rep	CDS	26424903	26424971	.	+	0	Parent=Os07t0636200-03
Chr07	irgsp1_rep	CDS	26425056	26425121	.	+	0	Parent=Os07t0636200-03
Chr07	irgsp1_rep	CDS	26425203	26425331	.	+	0	Parent=Os07t0636200-03
Chr07	irgsp1_rep	CDS	26425944	26426000	.	+	0	Parent=Os07t0636200-03
Chr07	irgsp1_rep	CDS	26426442	26426531	.	+	0	Parent=Os07t0636200-03
Chr07	irgsp1_rep	CDS	26426886	26426951	.	+	0	Parent=Os07t0636200-03
Chr07	irgsp1_rep	CDS	26427348	26427416	.	+	0	Parent=Os07t0636200-03
Chr07	irgsp1_rep	CDS	26427483	26427587	.	+	0	Parent=Os07t0636200-03
Chr07	irgsp1_rep	CDS	26427954	26428079	.	+	0	Parent=Os07t0636200-03
Chr07	irgsp1_rep	CDS	26428267	26428325	.	+	0	Parent=Os07t0636200-03
Chr07	irgsp1_rep	CDS	26428412	26428448	.	+	1	Parent=Os07t0636200-03
Chr07	irgsp1_rep	CDS	26428950	26429099	.	+	0	Parent=Os07t0636200-03
Chr07	irgsp1_rep	three_prime_UTR	26429100	26429287	.	+	.	Parent=Os07t0636200-03
Chr07	irgsp1_rep	mRNA	26432701	26435257	.	+	.	ID=Os07t0636400-01;Name=Os07t0636400-01;Locus_id=Os07g0636400;CGSNL Gene Symbol=RPL30E;CGSNL Gene Name=RIBOSOMAL PROTEIN L30E;Oryzabase Gene Symbol Synonym(s)=OsRPL30e%2C RPL30e;Oryzabase Gene Name Synonym(s)=ribosomal protein L30e%2C ribosomal protein large subunit 30e;Note=Similar to ribonuclease P.;Transcript_evidence=AK100630 (DDBJ%2C Best hit);ORF_evidence=NP_001152178.1 (RefSeq);InterPro=Ribosomal protein L7Ae/L30e/S12e/Gadd45 (IPR004038);NIAS_FLcDNA=J023109D15;Oryzabase=22202;Expression=AK100630;TENOR=Os07t0636400-01;KEGG=Os07t0636400-01
Chr07	irgsp1_rep	five_prime_UTR	26432701	26432864	.	+	.	Parent=Os07t0636400-01
Chr07	irgsp1_rep	five_prime_UTR	26433094	26433135	.	+	.	Parent=Os07t0636400-01
Chr07	irgsp1_rep	CDS	26433136	26433200	.	+	0	Parent=Os07t0636400-01
Chr07	irgsp1_rep	CDS	26433324	26433383	.	+	1	Parent=Os07t0636400-01
Chr07	irgsp1_rep	CDS	26433463	26433520	.	+	1	Parent=Os07t0636400-01
Chr07	irgsp1_rep	CDS	26433637	26433780	.	+	0	Parent=Os07t0636400-01
Chr07	irgsp1_rep	CDS	26434369	26434536	.	+	0	Parent=Os07t0636400-01
Chr07	irgsp1_rep	CDS	26434623	26434697	.	+	0	Parent=Os07t0636400-01
Chr07	irgsp1_rep	three_prime_UTR	26434698	26435257	.	+	.	Parent=Os07t0636400-01
Chr07	irgsp1_rep	mRNA	26456721	26457569	.	-	.	ID=Os07t0636800-01;Name=Os07t0636800-01;Locus_id=Os07g0636800;Note=Plant disease resistance response protein family protein.;Transcript_evidence=AK241035 (DDBJ%2C Best hit);ORF_evidence=B2WS85 (UniProt);InterPro=Plant disease resistance response protein (IPR004265);NIAS_FLcDNA=J065058P19;TENOR=Os07t0636800-01;KEGG=Os07t0636800-01
Chr07	irgsp1_rep	five_prime_UTR	26457550	26457569	.	-	.	Parent=Os07t0636800-01
Chr07	irgsp1_rep	CDS	26456941	26457549	.	-	0	Parent=Os07t0636800-01
Chr07	irgsp1_rep	three_prime_UTR	26456721	26456940	.	-	.	Parent=Os07t0636800-01
Chr07	irgsp1_rep	mRNA	26464176	26469970	.	-	.	ID=Os07t0636900-01;Name=Os07t0636900-01;Locus_id=Os07g0636900;Note=Asp/Glu racemase%2C active site domain containing protein.;Transcript_evidence=AK102097 (DDBJ%2C Best hit);ORF_evidence=A3BML6 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J033083H24;Expression=AK102097;TENOR=Os07t0636900-01;KEGG=Os07t0636900-01
Chr07	irgsp1_rep	five_prime_UTR	26469969	26469970	.	-	.	Parent=Os07t0636900-01
Chr07	irgsp1_rep	CDS	26468910	26469968	.	-	0	Parent=Os07t0636900-01
Chr07	irgsp1_rep	three_prime_UTR	26468835	26468909	.	-	.	Parent=Os07t0636900-01
Chr07	irgsp1_rep	three_prime_UTR	26465731	26466072	.	-	.	Parent=Os07t0636900-01
Chr07	irgsp1_rep	three_prime_UTR	26464176	26465617	.	-	.	Parent=Os07t0636900-01
Chr07	irgsp1_rep	mRNA	26464444	26468858	.	+	.	ID=Os07t0637000-01;Name=Os07t0637000-01;Locus_id=Os07g0637000;CGSNL Gene Symbol=CIPK21;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 21;Oryzabase Gene Symbol Synonym(s)=OsCIPK21;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 21;Note=Similar to CBL-interacting protein kinase 21.;Transcript_evidence=AK107137 (DDBJ%2C Best hit);ORF_evidence=Q0D4B2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),NAF domain (IPR004041),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),NAF/FISL domain (IPR018451),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=002-124-C11;Oryzabase=7408;TENOR=Os07t0637000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	26464444	26464578	.	+	.	Parent=Os07t0637000-01
Chr07	irgsp1_rep	CDS	26464579	26464728	.	+	0	Parent=Os07t0637000-01
Chr07	irgsp1_rep	CDS	26464808	26464870	.	+	0	Parent=Os07t0637000-01
Chr07	irgsp1_rep	CDS	26466203	26466274	.	+	0	Parent=Os07t0637000-01
Chr07	irgsp1_rep	CDS	26466378	26466485	.	+	0	Parent=Os07t0637000-01
Chr07	irgsp1_rep	CDS	26466603	26466683	.	+	0	Parent=Os07t0637000-01
Chr07	irgsp1_rep	CDS	26466756	26466809	.	+	0	Parent=Os07t0637000-01
Chr07	irgsp1_rep	CDS	26466906	26467031	.	+	0	Parent=Os07t0637000-01
Chr07	irgsp1_rep	CDS	26467118	26467327	.	+	0	Parent=Os07t0637000-01
Chr07	irgsp1_rep	CDS	26467441	26467542	.	+	0	Parent=Os07t0637000-01
Chr07	irgsp1_rep	CDS	26467820	26467936	.	+	0	Parent=Os07t0637000-01
Chr07	irgsp1_rep	CDS	26468040	26468111	.	+	0	Parent=Os07t0637000-01
Chr07	irgsp1_rep	CDS	26468225	26468299	.	+	0	Parent=Os07t0637000-01
Chr07	irgsp1_rep	CDS	26468446	26468550	.	+	0	Parent=Os07t0637000-01
Chr07	irgsp1_rep	three_prime_UTR	26468551	26468858	.	+	.	Parent=Os07t0637000-01
Chr07	irgsp1_rep	mRNA	26468884	26470717	.	+	.	ID=Os07t0637050-00;Name=Os07t0637050-00;Locus_id=Os07g0637050;Note=Hypothetical protein.;Transcript_evidence=tplb0021n11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0637050-00
Chr07	irgsp1_rep	five_prime_UTR	26468884	26470202	.	+	.	Parent=Os07t0637050-00
Chr07	irgsp1_rep	CDS	26470203	26470717	.	+	0	Parent=Os07t0637050-00
Chr07	irgsp1_rep	mRNA	26471576	26472347	.	+	.	ID=Os07t0637100-01;Name=Os07t0637100-01;Locus_id=Os07g0637100;Note=Molecular chaperone%2C heat shock protein%2C Hsp40%2C DnaJ domain containing protein.;Transcript_evidence=AK111132 (DDBJ%2C Best hit);ORF_evidence=B6SJN0 (UniProt);GO=Molecular Function: heat shock protein binding (GO:0031072);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623);NIAS_FLcDNA=002-176-D04;Expression=AK111132;TENOR=Os07t0637100-01;KEGG=Os07t0637100-01
Chr07	irgsp1_rep	five_prime_UTR	26471576	26471692	.	+	.	Parent=Os07t0637100-01
Chr07	irgsp1_rep	CDS	26471693	26471758	.	+	0	Parent=Os07t0637100-01
Chr07	irgsp1_rep	CDS	26471990	26472172	.	+	0	Parent=Os07t0637100-01
Chr07	irgsp1_rep	three_prime_UTR	26472173	26472347	.	+	.	Parent=Os07t0637100-01
Chr07	irgsp1_rep	mRNA	26472709	26473116	.	+	.	ID=Os07t0637150-01;Name=Os07t0637150-01;Locus_id=Os07g0637150;Note=Similar to DnaJ domain containing protein.;Transcript_evidence=AK240996 (DDBJ%2C Best hit);ORF_evidence=B6TF28 (UniProt);NIAS_FLcDNA=J065052N20;TENOR=Os07t0637150-01;KEGG=Os07t0637150-01
Chr07	irgsp1_rep	CDS	26472709	26472815	.	+	0	Parent=Os07t0637150-01
Chr07	irgsp1_rep	CDS	26472900	26472954	.	+	1	Parent=Os07t0637150-01
Chr07	irgsp1_rep	three_prime_UTR	26472955	26473116	.	+	.	Parent=Os07t0637150-01
Chr07	irgsp1_rep	mRNA	26474251	26478328	.	-	.	ID=Os07t0637200-01;Name=Os07t0637200-01;Locus_id=Os07g0637200;Note=Protein of unknown function DUF537 family protein.;Transcript_evidence=AK072575 (DDBJ%2C Best hit);ORF_evidence=A2YP33 (UniProt);GO=Cellular Component: peroxisome (GO:0005777);InterPro=Domain of unknown function DUF88 (IPR021139),Limkain-b1 (IPR024768);NIAS_FLcDNA=J023127O12;Expression=AK072575;TENOR=Os07t0637200-01;KEGG=Os07t0637200-01
Chr07	irgsp1_rep	five_prime_UTR	26478105	26478328	.	-	.	Parent=Os07t0637200-01
Chr07	irgsp1_rep	CDS	26477873	26478104	.	-	0	Parent=Os07t0637200-01
Chr07	irgsp1_rep	CDS	26475198	26476737	.	-	2	Parent=Os07t0637200-01
Chr07	irgsp1_rep	CDS	26474921	26475107	.	-	1	Parent=Os07t0637200-01
Chr07	irgsp1_rep	three_prime_UTR	26474251	26474920	.	-	.	Parent=Os07t0637200-01
Chr07	irgsp1_rep	mRNA	26474230	26475363	.	-	.	ID=Os07t0637200-02;Name=Os07t0637200-02;Locus_id=Os07g0637200;Note=Hypothetical conserved gene.;Transcript_evidence=AK062060 (DDBJ%2C Best hit);ORF_evidence=A2YP33 (UniProt);GO=Cellular Component: peroxisome (GO:0005777);InterPro=Limkain-b1 (IPR024768);NIAS_FLcDNA=001-044-C09;Expression=AK062060;TENOR=Os07t0637200-02;KEGG=Os07t0637200-02
Chr07	irgsp1_rep	five_prime_UTR	26475362	26475363	.	-	.	Parent=Os07t0637200-02
Chr07	irgsp1_rep	CDS	26475198	26475361	.	-	0	Parent=Os07t0637200-02
Chr07	irgsp1_rep	CDS	26474921	26475107	.	-	1	Parent=Os07t0637200-02
Chr07	irgsp1_rep	three_prime_UTR	26474230	26474920	.	-	.	Parent=Os07t0637200-02
Chr07	irgsp1_rep	mRNA	26481502	26485314	.	-	.	ID=Os07t0637300-01;Name=Os07t0637300-01;Locus_id=Os07g0637300;RAP-DB Gene Symbol Synonym(s)=PDK%2C OsHRK1;RAP-DB Gene Name Synonym(s)=pyruvate dehydrogenase kinase%2C OsHIRP1-regluated Kinase1;Oryzabase Gene Symbol Synonym(s)=OS-PYDK%2C Ospdhk%2C PDHK%2C PDK%2C OsPDK%2C Ospdhk2%2C pdhk2 OsHRK1%2C HRK1;Oryzabase Gene Name Synonym(s)=pyruvate dehydrogenase kinase%2C pyruvate dehydrogenase kinase 2%2C OsHIRP1-regluated Kinase1;Note=Pyruvate dehydrogenase kinase;Transcript_evidence=AK069157 (truncated),Inferred from literature;ORF_evidence=Q8H5R7;GO=Biological Process: phosphorylation (GO:0016310),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Alpha-ketoacid/pyruvate dehydrogenase kinase%2C N-terminal domain superfamily (IPR036784),Histidine kinase/HSP90-like ATPase superfamily (IPR036890),Branched-chain alpha-ketoacid dehydrogenase kinase/Pyruvate dehydrogenase kinase%2C N-terminal (IPR018955),Histidine kinase/HSP90-like ATPase (IPR003594),Histidine kinase domain (IPR005467),Signal transduction histidine kinase-related protein%2C C-terminal (IPR004358);NIAS_FLcDNA=J023007C01 (truncated);Manual Curation=April 24%2C 2020;Literature_PMID=31554292,30730020,DOI:10.2135/cropsci2011.07.0352;Oryzabase=15165;Expression=AK069157;TENOR=Os07t0637300-01;KEGG=Os07t0637300-01 (EC:2.7.11.2);B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=cytoplasm (GO:0005737) [strong punctate signals]
Chr07	irgsp1_rep	five_prime_UTR	26485172	26485314	.	-	.	Parent=Os07t0637300-01
Chr07	irgsp1_rep	CDS	26484935	26485171	.	-	0	Parent=Os07t0637300-01
Chr07	irgsp1_rep	CDS	26483865	26484126	.	-	0	Parent=Os07t0637300-01
Chr07	irgsp1_rep	CDS	26483476	26483656	.	-	2	Parent=Os07t0637300-01
Chr07	irgsp1_rep	CDS	26483092	26483239	.	-	1	Parent=Os07t0637300-01
Chr07	irgsp1_rep	CDS	26482154	26482358	.	-	0	Parent=Os07t0637300-01
Chr07	irgsp1_rep	CDS	26481836	26481894	.	-	2	Parent=Os07t0637300-01
Chr07	irgsp1_rep	three_prime_UTR	26481502	26481835	.	-	.	Parent=Os07t0637300-01
Chr07	irgsp1_rep	mRNA	26501465	26504227	.	+	.	ID=Os07t0637400-01;Name=Os07t0637400-01;Locus_id=Os07g0637400;CGSNL Gene Symbol=NPSN13;CGSNL Gene Name=NOVEL PLANT SNARE 13;Oryzabase Gene Symbol Synonym(s)=OsNPSN13%2C OryzaNPSN13;Oryzabase Gene Name Synonym(s)=SNARE 13;Note=Similar to Novel plant SNARE 12 (AtNPSN12).;Transcript_evidence=AK067595 (DDBJ%2C Best hit);ORF_evidence=Q5XQQ5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Target SNARE coiled-coil domain (IPR000727),Sec20 (IPR005606);NIAS_FLcDNA=J013108F08;Oryzabase=7304;Expression=AK067595;TENOR=Os07t0637400-01;KEGG=Os07t0637400-01
Chr07	irgsp1_rep	five_prime_UTR	26501465	26501588	.	+	.	Parent=Os07t0637400-01
Chr07	irgsp1_rep	CDS	26501589	26501665	.	+	0	Parent=Os07t0637400-01
Chr07	irgsp1_rep	CDS	26501882	26501974	.	+	1	Parent=Os07t0637400-01
Chr07	irgsp1_rep	CDS	26502214	26502307	.	+	1	Parent=Os07t0637400-01
Chr07	irgsp1_rep	CDS	26502402	26502439	.	+	0	Parent=Os07t0637400-01
Chr07	irgsp1_rep	CDS	26502579	26502670	.	+	1	Parent=Os07t0637400-01
Chr07	irgsp1_rep	CDS	26502759	26502838	.	+	2	Parent=Os07t0637400-01
Chr07	irgsp1_rep	CDS	26502912	26502968	.	+	0	Parent=Os07t0637400-01
Chr07	irgsp1_rep	CDS	26503085	26503177	.	+	0	Parent=Os07t0637400-01
Chr07	irgsp1_rep	CDS	26503346	26503420	.	+	0	Parent=Os07t0637400-01
Chr07	irgsp1_rep	CDS	26503847	26503948	.	+	0	Parent=Os07t0637400-01
Chr07	irgsp1_rep	three_prime_UTR	26503949	26504227	.	+	.	Parent=Os07t0637400-01
Chr07	irgsp1_rep	mRNA	26504430	26511490	.	-	.	ID=Os07t0637600-00;Name=Os07t0637600-00;Locus_id=Os07g0637600;Note=Similar to serine/threonine-protein kinase Haspin.;Transcript_evidence=BT066372 (DDBJ);ORF_evidence=NP_001149827.1 (RefSeq);TENOR=Os07t0637600-00
Chr07	irgsp1_rep	CDS	26511246	26511490	.	-	0	Parent=Os07t0637600-00
Chr07	irgsp1_rep	CDS	26511052	26511132	.	-	1	Parent=Os07t0637600-00
Chr07	irgsp1_rep	CDS	26509009	26509108	.	-	1	Parent=Os07t0637600-00
Chr07	irgsp1_rep	CDS	26508904	26508924	.	-	0	Parent=Os07t0637600-00
Chr07	irgsp1_rep	three_prime_UTR	26508409	26508903	.	-	.	Parent=Os07t0637600-00
Chr07	irgsp1_rep	three_prime_UTR	26508205	26508328	.	-	.	Parent=Os07t0637600-00
Chr07	irgsp1_rep	three_prime_UTR	26508012	26508127	.	-	.	Parent=Os07t0637600-00
Chr07	irgsp1_rep	three_prime_UTR	26507783	26507894	.	-	.	Parent=Os07t0637600-00
Chr07	irgsp1_rep	three_prime_UTR	26507588	26507680	.	-	.	Parent=Os07t0637600-00
Chr07	irgsp1_rep	three_prime_UTR	26507438	26507499	.	-	.	Parent=Os07t0637600-00
Chr07	irgsp1_rep	three_prime_UTR	26506915	26507062	.	-	.	Parent=Os07t0637600-00
Chr07	irgsp1_rep	three_prime_UTR	26505316	26505381	.	-	.	Parent=Os07t0637600-00
Chr07	irgsp1_rep	three_prime_UTR	26505185	26505237	.	-	.	Parent=Os07t0637600-00
Chr07	irgsp1_rep	three_prime_UTR	26504836	26504902	.	-	.	Parent=Os07t0637600-00
Chr07	irgsp1_rep	three_prime_UTR	26504430	26504735	.	-	.	Parent=Os07t0637600-00
Chr07	irgsp1_rep	mRNA	26516300	26517322	.	+	.	ID=Os07t0637700-00;Name=Os07t0637700-00;Locus_id=Os07g0637700;Note=Similar to Disease resistance-responsive family protein.;Transcript_evidence=CT837726 (DDBJ%2C Best hit);ORF_evidence=A2YP37 (UniProt);InterPro=Plant disease resistance response protein (IPR004265);TENOR=Os07t0637700-00;KEGG=Os07t0637700-00
Chr07	irgsp1_rep	five_prime_UTR	26516300	26516450	.	+	.	Parent=Os07t0637700-00
Chr07	irgsp1_rep	CDS	26516451	26517053	.	+	0	Parent=Os07t0637700-00
Chr07	irgsp1_rep	three_prime_UTR	26517054	26517322	.	+	.	Parent=Os07t0637700-00
Chr07	irgsp1_rep	mRNA	26527934	26530892	.	-	.	ID=Os07t0638000-01;Name=Os07t0638000-01;Locus_id=Os07g0638000;Note=Conserved hypothetical protein.;Transcript_evidence=AK060298 (DDBJ%2C Best hit);ORF_evidence=B9FUF9 (UniProt);NIAS_FLcDNA=001-006-F07;TENOR=Os07t0638000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	26530892	26530892	.	-	.	Parent=Os07t0638000-01
Chr07	irgsp1_rep	CDS	26530820	26530891	.	-	0	Parent=Os07t0638000-01
Chr07	irgsp1_rep	CDS	26530337	26530482	.	-	0	Parent=Os07t0638000-01
Chr07	irgsp1_rep	CDS	26530163	26530250	.	-	1	Parent=Os07t0638000-01
Chr07	irgsp1_rep	CDS	26530006	26530080	.	-	0	Parent=Os07t0638000-01
Chr07	irgsp1_rep	CDS	26529687	26529923	.	-	0	Parent=Os07t0638000-01
Chr07	irgsp1_rep	CDS	26529314	26529412	.	-	0	Parent=Os07t0638000-01
Chr07	irgsp1_rep	CDS	26529139	26529213	.	-	0	Parent=Os07t0638000-01
Chr07	irgsp1_rep	CDS	26528985	26529043	.	-	0	Parent=Os07t0638000-01
Chr07	irgsp1_rep	CDS	26528729	26528840	.	-	1	Parent=Os07t0638000-01
Chr07	irgsp1_rep	CDS	26528485	26528586	.	-	0	Parent=Os07t0638000-01
Chr07	irgsp1_rep	CDS	26528264	26528404	.	-	0	Parent=Os07t0638000-01
Chr07	irgsp1_rep	three_prime_UTR	26527934	26528263	.	-	.	Parent=Os07t0638000-01
Chr07	irgsp1_rep	mRNA	26542983	26545180	.	+	.	ID=Os07t0638100-01;Name=Os07t0638100-01;Locus_id=Os07g0638100;Note=Six-bladed beta-propeller%2C TolB-like domain containing protein.;Transcript_evidence=AK100429 (DDBJ%2C Best hit);ORF_evidence=NP_192096.1 (RefSeq);InterPro=Six-bladed beta-propeller%2C TolB-like (IPR011042),WD40-like Beta Propeller (IPR011659);NIAS_FLcDNA=J023088F04;Expression=AK100429;TENOR=Os07t0638100-01;KEGG=Os07t0638100-01
Chr07	irgsp1_rep	five_prime_UTR	26542983	26543025	.	+	.	Parent=Os07t0638100-01
Chr07	irgsp1_rep	CDS	26543026	26545005	.	+	0	Parent=Os07t0638100-01
Chr07	irgsp1_rep	three_prime_UTR	26545006	26545180	.	+	.	Parent=Os07t0638100-01
Chr07	irgsp1_rep	mRNA	26548836	26550044	.	+	.	ID=Os07t0638300-01;Name=Os07t0638300-01;Locus_id=Os07g0638300;CGSNL Gene Symbol=1CYSPRXA;CGSNL Gene Name=1-CYS PEROXIREDOXIN A;Oryzabase Gene Symbol Synonym(s)=Os1-CysPrxA%2C 1-CysPrxA;Oryzabase Gene Name Synonym(s)=1 Cys-peroxiredoxin;Note=Similar to 1-Cys peroxiredoxin.;Transcript_evidence=AK101401 (DDBJ%2C Best hit),AK102982 (DDBJ%2C Best hit);ORF_evidence=P0C5C8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: antioxidant activity (GO:0016209),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: peroxiredoxin activity (GO:0051920);InterPro=Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant (IPR000866),Thioredoxin-like fold (IPR012336),Peroxiredoxin%2C C-terminal (IPR019479);NIAS_FLcDNA=J033037F14,J033115O22;Oryzabase=21753;Expression=AK101401;TENOR=Os07t0638300-01;KEGG=Os07t0638300-01 (EC:1.11.1.15%2C EC:1.11.1.7%2C EC:3.1.1.-)
Chr07	irgsp1_rep	five_prime_UTR	26548836	26548930	.	+	.	Parent=Os07t0638300-01
Chr07	irgsp1_rep	CDS	26548931	26549048	.	+	0	Parent=Os07t0638300-01
Chr07	irgsp1_rep	CDS	26549161	26549309	.	+	2	Parent=Os07t0638300-01
Chr07	irgsp1_rep	CDS	26549409	26549804	.	+	0	Parent=Os07t0638300-01
Chr07	irgsp1_rep	three_prime_UTR	26549805	26550044	.	+	.	Parent=Os07t0638300-01
Chr07	irgsp1_rep	mRNA	26551676	26552939	.	+	.	ID=Os07t0638400-01;Name=Os07t0638400-01;Locus_id=Os07g0638400;CGSNL Gene Symbol=1CYSPRXB;CGSNL Gene Name=1-CYS PEROXIREDOXIN B;Oryzabase Gene Symbol Synonym(s)=Os1-Cys Prx B%2C 1-Cys Prx B%2C Os1-CysPrxB%2C 1-CysPrxB;Oryzabase Gene Name Synonym(s)=peroxiredoxin%2C 1 Cys-peroxiredoxin B;Note=Similar to 1-Cys peroxiredoxin.;Transcript_evidence=AK104089 (DDBJ%2C Best hit),AK073273 (DDBJ%2C Best hit);ORF_evidence=P0C5D0 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: antioxidant activity (GO:0016209),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: peroxiredoxin activity (GO:0051920);InterPro=Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant (IPR000866),Thioredoxin-like fold (IPR012336),Peroxiredoxin%2C C-terminal (IPR019479);NIAS_FLcDNA=001-030-D12,J033028A12;Oryzabase=19837;Expression=AK104089;TENOR=Os07t0638400-01;KEGG=Os07t0638400-01 (EC:1.11.1.15%2C EC:1.11.1.7%2C EC:3.1.1.-)
Chr07	irgsp1_rep	five_prime_UTR	26551676	26551780	.	+	.	Parent=Os07t0638400-01
Chr07	irgsp1_rep	CDS	26551781	26551898	.	+	0	Parent=Os07t0638400-01
Chr07	irgsp1_rep	CDS	26552002	26552150	.	+	2	Parent=Os07t0638400-01
Chr07	irgsp1_rep	CDS	26552265	26552660	.	+	0	Parent=Os07t0638400-01
Chr07	irgsp1_rep	three_prime_UTR	26552661	26552939	.	+	.	Parent=Os07t0638400-01
Chr07	irgsp1_rep	mRNA	26554538	26555577	.	+	.	ID=Os07t0638500-01;Name=Os07t0638500-01;Locus_id=Os07g0638500;Note=Similar to Dirigent-like protein (Fragment).;Transcript_evidence=AK108983 (DDBJ%2C Best hit);ORF_evidence=A2YP43 (UniProt);InterPro=Plant disease resistance response protein (IPR004265);NIAS_FLcDNA=002-153-F03;Expression=AK108983;TENOR=Os07t0638500-01;KEGG=Os07t0638500-01
Chr07	irgsp1_rep	five_prime_UTR	26554538	26554634	.	+	.	Parent=Os07t0638500-01
Chr07	irgsp1_rep	CDS	26554635	26555252	.	+	0	Parent=Os07t0638500-01
Chr07	irgsp1_rep	three_prime_UTR	26555253	26555577	.	+	.	Parent=Os07t0638500-01
Chr07	irgsp1_rep	mRNA	26557097	26563387	.	-	.	ID=Os07t0638600-00;Name=Os07t0638600-00;Locus_id=Os07g0638600;Oryzabase Gene Symbol Synonym(s)=prx105%2C OsPRX105%2C prx106;Oryzabase Gene Name Synonym(s)=class III peroxidase 105%2C class III peroxidase 106;Note=Similar to Class III peroxidase 44.;Transcript_evidence=BT061712 (DDBJ);ORF_evidence=Q5U1P9 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);Oryzabase=14627,14628;TENOR=Os07t0638600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	26562881	26563387	.	-	0	Parent=Os07t0638600-00
Chr07	irgsp1_rep	CDS	26561967	26562461	.	-	0	Parent=Os07t0638600-00
Chr07	irgsp1_rep	CDS	26557312	26557635	.	-	0	Parent=Os07t0638600-00
Chr07	irgsp1_rep	three_prime_UTR	26557097	26557311	.	-	.	Parent=Os07t0638600-00
Chr07	irgsp1_rep	mRNA	26557315	26562374	.	+	.	ID=Os07t0638801-00;Name=Os07t0638801-00;Locus_id=Os07g0638801;Note=Hypothetical protein.;Transcript_evidence=tplb0026b16 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0638801-00
Chr07	irgsp1_rep	CDS	26557315	26558254	.	+	0	Parent=Os07t0638801-00
Chr07	irgsp1_rep	CDS	26561893	26562374	.	+	2	Parent=Os07t0638801-00
Chr07	irgsp1_rep	mRNA	26603637	26604964	.	+	.	ID=Os07t0639000-01;Name=Os07t0639000-01;Locus_id=Os07g0639000;Oryzabase Gene Symbol Synonym(s)=prx107;Oryzabase Gene Name Synonym(s)=class III peroxidase 107;Note=Similar to Class III peroxidase 46.;Transcript_evidence=AK102122 (DDBJ%2C Best hit),AK073381 (DDBJ%2C Best hit);ORF_evidence=Q5U1P7 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J033084O03,J033028K07;Oryzabase=14629;TENOR=Os07t0639000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	26603637	26603668	.	+	.	Parent=Os07t0639000-01
Chr07	irgsp1_rep	CDS	26603669	26603890	.	+	0	Parent=Os07t0639000-01
Chr07	irgsp1_rep	CDS	26603989	26604750	.	+	0	Parent=Os07t0639000-01
Chr07	irgsp1_rep	three_prime_UTR	26604751	26604964	.	+	.	Parent=Os07t0639000-01
Chr07	irgsp1_rep	mRNA	26605740	26611398	.	-	.	ID=Os07t0639100-00;Name=Os07t0639100-00;Locus_id=Os07g0639100;Oryzabase Gene Symbol Synonym(s)=OsACS8;Oryzabase Gene Name Synonym(s)=acyl-CoA synthetase 8;Note=AMP-dependent synthetase/ligase domain containing protein.;Transcript_evidence=AK363916 (DDBJ);ORF_evidence=Q8GVF9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873),AMP-binding%2C conserved site (IPR020845);Oryzabase=15673;TENOR=Os07t0639100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	26610276	26611398	.	-	0	Parent=Os07t0639100-00
Chr07	irgsp1_rep	CDS	26606352	26606775	.	-	2	Parent=Os07t0639100-00
Chr07	irgsp1_rep	CDS	26606010	26606115	.	-	1	Parent=Os07t0639100-00
Chr07	irgsp1_rep	CDS	26605740	26605871	.	-	0	Parent=Os07t0639100-00
Chr07	irgsp1_rep	mRNA	26615493	26616795	.	+	.	ID=Os07t0639400-01;Name=Os07t0639400-01;Locus_id=Os07g0639400;Oryzabase Gene Symbol Synonym(s)=prx108;Oryzabase Gene Name Synonym(s)=class III peroxidase 108;Note=Similar to Peroxidase 1.;Transcript_evidence=AK110555 (DDBJ%2C Best hit);ORF_evidence=A3BMN4 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=002-168-C06;Oryzabase=14630;Expression=AK110555;TENOR=Os07t0639400-01;KEGG=Os07t0639400-01
Chr07	irgsp1_rep	five_prime_UTR	26615493	26615564	.	+	.	Parent=Os07t0639400-01
Chr07	irgsp1_rep	CDS	26615565	26616599	.	+	0	Parent=Os07t0639400-01
Chr07	irgsp1_rep	three_prime_UTR	26616600	26616795	.	+	.	Parent=Os07t0639400-01
Chr07	irgsp1_rep	mRNA	26617306	26618069	.	-	.	ID=Os07t0639500-00;Name=Os07t0639500-00;Locus_id=Os07g0639500;Note=Similar to Class III peroxidase 45.;Transcript_evidence=M73234 (DDBJ);ORF_evidence=Q5U1P8 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidase%2C active site (IPR019794);TENOR=Os07t0639500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	26618032	26618069	.	-	.	Parent=Os07t0639500-00
Chr07	irgsp1_rep	CDS	26617849	26618031	.	-	0	Parent=Os07t0639500-00
Chr07	irgsp1_rep	CDS	26617306	26617758	.	-	0	Parent=Os07t0639500-00
Chr07	irgsp1_rep	mRNA	26618661	26622023	.	-	.	ID=Os07t0639600-01;Name=Os07t0639600-01;Locus_id=Os07g0639600;Note=Peptidase C15%2C pyroglutamyl peptidase I family protein.;Transcript_evidence=AK067207 (DDBJ%2C Best hit);ORF_evidence=NP_001149461.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508);InterPro=Peptidase C15%2C pyroglutamyl peptidase I (IPR000816),Peptidase C15%2C pyroglutamyl peptidase I-like (IPR016125);NIAS_FLcDNA=J013096M06;Expression=AK067207;TENOR=Os07t0639600-01;KEGG=Os07t0639600-01
Chr07	irgsp1_rep	five_prime_UTR	26621764	26622023	.	-	.	Parent=Os07t0639600-01
Chr07	irgsp1_rep	five_prime_UTR	26620466	26620513	.	-	.	Parent=Os07t0639600-01
Chr07	irgsp1_rep	CDS	26620199	26620465	.	-	0	Parent=Os07t0639600-01
Chr07	irgsp1_rep	CDS	26619932	26620036	.	-	0	Parent=Os07t0639600-01
Chr07	irgsp1_rep	CDS	26619807	26619854	.	-	0	Parent=Os07t0639600-01
Chr07	irgsp1_rep	CDS	26618919	26619158	.	-	0	Parent=Os07t0639600-01
Chr07	irgsp1_rep	three_prime_UTR	26618661	26618918	.	-	.	Parent=Os07t0639600-01
Chr07	irgsp1_rep	mRNA	26628478	26631258	.	+	.	ID=Os07t0639800-01;Name=Os07t0639800-01;Locus_id=Os07g0639800;CGSNL Gene Symbol=EIF6;CGSNL Gene Name=EUKARYOTIC INITIATION FACTOR 6;Oryzabase Gene Symbol Synonym(s)=eIF-6%2C OseIF6;Oryzabase Gene Name Synonym(s)=Eukaryotic translation initiation factor 6;Note=Similar to Eukaryotic translation initiation factor 6 (Fragment).;Transcript_evidence=AK074012 (DDBJ%2C Best hit);ORF_evidence=B4FKD5 (UniProt);GO=Biological Process: mature ribosome assembly (GO:0042256),Molecular Function: ribosome binding (GO:0043022);InterPro=Translation initiation factor IF6 (IPR002769);NIAS_FLcDNA=J033074A21;Oryzabase=21440;Expression=AK074012;TENOR=Os07t0639800-01;KEGG=Os07t0639800-01
Chr07	irgsp1_rep	five_prime_UTR	26628478	26628580	.	+	.	Parent=Os07t0639800-01
Chr07	irgsp1_rep	five_prime_UTR	26628698	26628751	.	+	.	Parent=Os07t0639800-01
Chr07	irgsp1_rep	CDS	26628752	26628761	.	+	0	Parent=Os07t0639800-01
Chr07	irgsp1_rep	CDS	26629289	26629385	.	+	2	Parent=Os07t0639800-01
Chr07	irgsp1_rep	CDS	26629480	26629565	.	+	1	Parent=Os07t0639800-01
Chr07	irgsp1_rep	CDS	26629653	26629697	.	+	2	Parent=Os07t0639800-01
Chr07	irgsp1_rep	CDS	26630368	26630498	.	+	2	Parent=Os07t0639800-01
Chr07	irgsp1_rep	CDS	26630596	26630706	.	+	0	Parent=Os07t0639800-01
Chr07	irgsp1_rep	CDS	26630795	26631052	.	+	0	Parent=Os07t0639800-01
Chr07	irgsp1_rep	three_prime_UTR	26631053	26631258	.	+	.	Parent=Os07t0639800-01
Chr07	irgsp1_rep	mRNA	26628502	26631239	.	+	.	ID=Os07t0639800-02;Name=Os07t0639800-02;Locus_id=Os07g0639800;CGSNL Gene Symbol=EIF6;CGSNL Gene Name=EUKARYOTIC INITIATION FACTOR 6;Oryzabase Gene Symbol Synonym(s)=eIF-6%2C OseIF6;Oryzabase Gene Name Synonym(s)=Eukaryotic translation initiation factor 6;Note=Similar to Eukaryotic translation initiation factor 6 (Fragment).;Transcript_evidence=AK104592 (DDBJ%2C Best hit),AK104739 (DDBJ%2C Best hit);ORF_evidence=B4FKD5 (UniProt);GO=Biological Process: mature ribosome assembly (GO:0042256),Molecular Function: ribosome binding (GO:0043022);InterPro=Translation initiation factor IF6 (IPR002769);NIAS_FLcDNA=006-308-B01,001-038-D07;Oryzabase=21440;Expression=AK104592;TENOR=Os07t0639800-02;KEGG=Os07t0639800-02
Chr07	irgsp1_rep	five_prime_UTR	26628502	26628580	.	+	.	Parent=Os07t0639800-02
Chr07	irgsp1_rep	five_prime_UTR	26628698	26628751	.	+	.	Parent=Os07t0639800-02
Chr07	irgsp1_rep	CDS	26628752	26628761	.	+	0	Parent=Os07t0639800-02
Chr07	irgsp1_rep	CDS	26629289	26629385	.	+	2	Parent=Os07t0639800-02
Chr07	irgsp1_rep	CDS	26629480	26629565	.	+	1	Parent=Os07t0639800-02
Chr07	irgsp1_rep	CDS	26629653	26629697	.	+	2	Parent=Os07t0639800-02
Chr07	irgsp1_rep	CDS	26630368	26630498	.	+	2	Parent=Os07t0639800-02
Chr07	irgsp1_rep	CDS	26630596	26630706	.	+	0	Parent=Os07t0639800-02
Chr07	irgsp1_rep	CDS	26630795	26631052	.	+	0	Parent=Os07t0639800-02
Chr07	irgsp1_rep	three_prime_UTR	26631053	26631239	.	+	.	Parent=Os07t0639800-02
Chr07	irgsp1_rep	mRNA	26631395	26633619	.	-	.	ID=Os07t0639900-01;Name=Os07t0639900-01;Locus_id=Os07g0639900;Note=Thymidylate kinase-like protein.;Transcript_evidence=AK242510 (DDBJ%2C Best hit);ORF_evidence=B6TN98 (UniProt);GO=Biological Process: dTDP biosynthetic process (GO:0006233),Molecular Function: thymidylate kinase activity (GO:0004798),Molecular Function: ATP binding (GO:0005524);InterPro=Thymidylate kinase (IPR018094),Thymidylate kinase%2C conserved site (IPR018095);NIAS_FLcDNA=J080311G07;TENOR=Os07t0639900-01;KEGG=Os07t0639900-01 (EC:2.7.4.9)
Chr07	irgsp1_rep	five_prime_UTR	26633441	26633619	.	-	.	Parent=Os07t0639900-01
Chr07	irgsp1_rep	CDS	26633394	26633440	.	-	0	Parent=Os07t0639900-01
Chr07	irgsp1_rep	CDS	26632970	26633296	.	-	1	Parent=Os07t0639900-01
Chr07	irgsp1_rep	CDS	26632702	26632813	.	-	1	Parent=Os07t0639900-01
Chr07	irgsp1_rep	CDS	26632551	26632610	.	-	0	Parent=Os07t0639900-01
Chr07	irgsp1_rep	CDS	26631950	26632054	.	-	0	Parent=Os07t0639900-01
Chr07	irgsp1_rep	CDS	26631587	26631697	.	-	0	Parent=Os07t0639900-01
Chr07	irgsp1_rep	three_prime_UTR	26631395	26631586	.	-	.	Parent=Os07t0639900-01
Chr07	irgsp1_rep	mRNA	26633873	26637242	.	+	.	ID=Os07t0640000-01;Name=Os07t0640000-01;Locus_id=Os07g0640000;RAP-DB Gene Symbol Synonym(s)=OsPRMT3;RAP-DB Gene Name Synonym(s)=protein arginine methyltransferase 3;CGSNL Gene Symbol=PRMT3;CGSNL Gene Name=PROTEIN ARGININE METHYLTRANSFERASE 3;Oryzabase Gene Symbol Synonym(s)=OsPRMT3;Oryzabase Gene Name Synonym(s)=protein arginine methyltransferase 3;Note=Protein arginine methyltransferase;Transcript_evidence=AK105489 (truncated),Inferred from literature;ORF_evidence=A3BMN9;GO=Biological Process: protein methylation (GO:0006479),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Zinc finger C2H2 superfamily (IPR036236),S-adenosyl-L-methionine-dependent methyltransferase (IPR029063),Protein arginine N-methyltransferase (IPR025799),Zinc finger C2H2-type (IPR013087),ZN622/Rei1/Reh1%2C zinc finger C2H2-type (IPR041661),Methyltransferase domain 25 (IPR041698);NIAS_FLcDNA=001-127-B11 (truncated);Manual Curation=September 1%2C 2020;Literature_PMID=21853042;Oryzabase=9673;TENOR=Os07t0640000-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	26633873	26634190	.	+	0	Parent=Os07t0640000-01
Chr07	irgsp1_rep	CDS	26634394	26634894	.	+	0	Parent=Os07t0640000-01
Chr07	irgsp1_rep	CDS	26634991	26635088	.	+	0	Parent=Os07t0640000-01
Chr07	irgsp1_rep	CDS	26635480	26635558	.	+	1	Parent=Os07t0640000-01
Chr07	irgsp1_rep	CDS	26635645	26635905	.	+	0	Parent=Os07t0640000-01
Chr07	irgsp1_rep	CDS	26635989	26636156	.	+	0	Parent=Os07t0640000-01
Chr07	irgsp1_rep	CDS	26636380	26636817	.	+	0	Parent=Os07t0640000-01
Chr07	irgsp1_rep	three_prime_UTR	26636818	26637242	.	+	.	Parent=Os07t0640000-01
Chr07	irgsp1_rep	mRNA	26637549	26639817	.	+	.	ID=Os07t0640100-01;Name=Os07t0640100-01;Locus_id=Os07g0640100;Note=Complex 1 LYR protein family protein.;Transcript_evidence=AK059275 (DDBJ%2C Best hit),AK070897 (DDBJ%2C Best hit);ORF_evidence=B4FHZ4 (UniProt);NIAS_FLcDNA=001-025-C03,J023073H14;Expression=AK059275;TENOR=Os07t0640100-01;KEGG=Os07t0640100-01 (EC:1.6.5.3%2C EC:1.6.99.3)
Chr07	irgsp1_rep	five_prime_UTR	26637549	26637696	.	+	.	Parent=Os07t0640100-01
Chr07	irgsp1_rep	CDS	26637697	26637909	.	+	0	Parent=Os07t0640100-01
Chr07	irgsp1_rep	CDS	26639379	26639561	.	+	0	Parent=Os07t0640100-01
Chr07	irgsp1_rep	three_prime_UTR	26639562	26639817	.	+	.	Parent=Os07t0640100-01
Chr07	irgsp1_rep	mRNA	26640735	26645331	.	+	.	ID=Os07t0640200-01;Name=Os07t0640200-01;Locus_id=Os07g0640200;Note=Carbohydrate kinase%2C FGGY family protein.;Transcript_evidence=AK070161 (DDBJ%2C Best hit);ORF_evidence=NP_001149021.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Carbohydrate kinase%2C FGGY (IPR000577),Carbohydrate kinase%2C FGGY%2C N-terminal (IPR018484),Carbohydrate kinase%2C FGGY%2C C-terminal (IPR018485);NIAS_FLcDNA=J023045I10;Expression=AK070161;TENOR=Os07t0640200-01;KEGG=Os07t0640200-01 (EC:2.7.1.17)
Chr07	irgsp1_rep	five_prime_UTR	26640735	26641015	.	+	.	Parent=Os07t0640200-01
Chr07	irgsp1_rep	CDS	26641016	26641077	.	+	0	Parent=Os07t0640200-01
Chr07	irgsp1_rep	CDS	26642059	26642710	.	+	1	Parent=Os07t0640200-01
Chr07	irgsp1_rep	CDS	26642827	26642915	.	+	0	Parent=Os07t0640200-01
Chr07	irgsp1_rep	CDS	26643374	26643438	.	+	1	Parent=Os07t0640200-01
Chr07	irgsp1_rep	CDS	26643547	26643602	.	+	2	Parent=Os07t0640200-01
Chr07	irgsp1_rep	CDS	26643687	26643807	.	+	0	Parent=Os07t0640200-01
Chr07	irgsp1_rep	CDS	26643896	26643970	.	+	2	Parent=Os07t0640200-01
Chr07	irgsp1_rep	CDS	26644269	26644322	.	+	2	Parent=Os07t0640200-01
Chr07	irgsp1_rep	CDS	26644410	26644504	.	+	2	Parent=Os07t0640200-01
Chr07	irgsp1_rep	CDS	26644584	26644758	.	+	0	Parent=Os07t0640200-01
Chr07	irgsp1_rep	CDS	26644873	26645117	.	+	2	Parent=Os07t0640200-01
Chr07	irgsp1_rep	three_prime_UTR	26645118	26645331	.	+	.	Parent=Os07t0640200-01
Chr07	irgsp1_rep	mRNA	26646515	26647959	.	-	.	ID=Os07t0640300-00;Name=Os07t0640300-00;Locus_id=Os07g0640300;Note=Hypothetical conserved gene.;Transcript_evidence=CT836139 (DDBJ%2C Best hit);ORF_evidence=A3BMP2 (UniProt);TENOR=Os07t0640300-00;KEGG=Os07t0640300-00
Chr07	irgsp1_rep	five_prime_UTR	26647958	26647959	.	-	.	Parent=Os07t0640300-00
Chr07	irgsp1_rep	CDS	26647887	26647957	.	-	0	Parent=Os07t0640300-00
Chr07	irgsp1_rep	CDS	26647678	26647809	.	-	1	Parent=Os07t0640300-00
Chr07	irgsp1_rep	CDS	26647486	26647570	.	-	1	Parent=Os07t0640300-00
Chr07	irgsp1_rep	CDS	26646838	26646846	.	-	0	Parent=Os07t0640300-00
Chr07	irgsp1_rep	three_prime_UTR	26646515	26646837	.	-	.	Parent=Os07t0640300-00
Chr07	irgsp1_rep	mRNA	26661089	26661663	.	+	.	ID=Os07t0640401-00;Name=Os07t0640401-00;Locus_id=Os07g0640401;Note=Similar to Zinc finger CCHC domain-containing protein 10.;Transcript_evidence=AK358102 (DDBJ);ORF_evidence=B6TKA1 (UniProt);TENOR=Os07t0640401-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	26661089	26661143	.	+	.	Parent=Os07t0640401-00
Chr07	irgsp1_rep	CDS	26661144	26661341	.	+	0	Parent=Os07t0640401-00
Chr07	irgsp1_rep	three_prime_UTR	26661342	26661663	.	+	.	Parent=Os07t0640401-00
Chr07	irgsp1_rep	mRNA	26667948	26669931	.	+	.	ID=Os07t0640600-00;Name=Os07t0640600-00;Locus_id=Os07g0640600;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os07t0640600-00;KEGG=Os07t0640600-00
Chr07	irgsp1_rep	CDS	26667948	26668029	.	+	0	Parent=Os07t0640600-00
Chr07	irgsp1_rep	CDS	26668646	26668715	.	+	2	Parent=Os07t0640600-00
Chr07	irgsp1_rep	CDS	26669847	26669931	.	+	1	Parent=Os07t0640600-00
Chr07	irgsp1_rep	mRNA	26671601	26671987	.	+	.	ID=Os07t0640800-01;Name=Os07t0640800-01;Locus_id=Os07g0640800;Note=Non-protein coding transcript.;Transcript_evidence=AK107877 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-134-D02;TENOR=Os07t0640800-01
Chr07	irgsp1_rep	exon	26671601	26671987	.	+	.	Parent=Os07t0640800-01
Chr07	irgsp1_rep	mRNA	26673661	26676848	.	+	.	ID=Os07t0640900-01;Name=Os07t0640900-01;Locus_id=Os07g0640900;CGSNL Gene Symbol=HSFB4B;CGSNL Gene Name=HEAT STRESS TRANSCRIPTION FACTOR B4B;Oryzabase Gene Symbol Synonym(s)=HSFB4b%2C OsHSFB4b%2C OsHsf-19%2C OsHSF19%2C rHsf12%2C OsHSF12%2C HSF12%2C HSF19;Oryzabase Gene Name Synonym(s)=Heat stress transcription factor B4b%2C Heat stress transcription factor B-4b%2C Heat stress transcription factor 19%2C Heat stress transcription factor 12;Note=Similar to Isoform 2 of Heat stress transcription factor B-4b.;Transcript_evidence=AK102159 (DDBJ%2C Best hit);ORF_evidence=Q7XHZ0-2 (UniProt);NIAS_FLcDNA=J033086G01;Oryzabase=8565;Expression=AK102159;TENOR=Os07t0640900-01;KEGG=Os07t0640900-01
Chr07	irgsp1_rep	five_prime_UTR	26673661	26673757	.	+	.	Parent=Os07t0640900-01
Chr07	irgsp1_rep	CDS	26673758	26673809	.	+	0	Parent=Os07t0640900-01
Chr07	irgsp1_rep	CDS	26675811	26676355	.	+	2	Parent=Os07t0640900-01
Chr07	irgsp1_rep	three_prime_UTR	26676356	26676848	.	+	.	Parent=Os07t0640900-01
Chr07	irgsp1_rep	mRNA	26673663	26676853	.	+	.	ID=Os07t0640900-02;Name=Os07t0640900-02;Locus_id=Os07g0640900;CGSNL Gene Symbol=HSFB4B;CGSNL Gene Name=HEAT STRESS TRANSCRIPTION FACTOR B4B;Oryzabase Gene Symbol Synonym(s)=HSFB4b%2C OsHSFB4b%2C OsHsf-19%2C OsHSF19%2C rHsf12%2C OsHSF12%2C HSF12%2C HSF19;Oryzabase Gene Name Synonym(s)=Heat stress transcription factor B4b%2C Heat stress transcription factor B-4b%2C Heat stress transcription factor 19%2C Heat stress transcription factor 12;Note=Similar to Heat shock transcription factor 33 (Fragment).;Transcript_evidence=AK063952 (DDBJ%2C Best hit);ORF_evidence=Q7XHZ0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Heat shock factor (HSF)-type%2C DNA-binding (IPR000232),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=001-123-F07;Oryzabase=8565;Expression=AK063952;TENOR=Os07t0640900-02;KEGG=Os07t0640900-02
Chr07	irgsp1_rep	five_prime_UTR	26673663	26673757	.	+	.	Parent=Os07t0640900-02
Chr07	irgsp1_rep	CDS	26673758	26674036	.	+	0	Parent=Os07t0640900-02
Chr07	irgsp1_rep	CDS	26675702	26676355	.	+	0	Parent=Os07t0640900-02
Chr07	irgsp1_rep	three_prime_UTR	26676356	26676853	.	+	.	Parent=Os07t0640900-02
Chr07	irgsp1_rep	mRNA	26673769	26676848	.	+	.	ID=Os07t0640900-03;Name=Os07t0640900-03;Locus_id=Os07g0640900;CGSNL Gene Symbol=HSFB4B;CGSNL Gene Name=HEAT STRESS TRANSCRIPTION FACTOR B4B;Oryzabase Gene Symbol Synonym(s)=HSFB4b%2C OsHSFB4b%2C OsHsf-19%2C OsHSF19%2C rHsf12%2C OsHSF12%2C HSF12%2C HSF19;Oryzabase Gene Name Synonym(s)=Heat stress transcription factor B4b%2C Heat stress transcription factor B-4b%2C Heat stress transcription factor 19%2C Heat stress transcription factor 12;Note=Similar to cDNA clone:001-123-F07%2C full insert sequence.;Transcript_evidence=AK099354 (DDBJ%2C Best hit);ORF_evidence=B7E985 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Heat shock factor (HSF)-type%2C DNA-binding (IPR000232),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=J033042P04;Oryzabase=8565;Expression=AK099354;TENOR=Os07t0640900-03;KEGG=Os07t0640900-03
Chr07	irgsp1_rep	five_prime_UTR	26673769	26673769	.	+	.	Parent=Os07t0640900-03
Chr07	irgsp1_rep	CDS	26673770	26674036	.	+	0	Parent=Os07t0640900-03
Chr07	irgsp1_rep	CDS	26675702	26676355	.	+	0	Parent=Os07t0640900-03
Chr07	irgsp1_rep	three_prime_UTR	26676356	26676848	.	+	.	Parent=Os07t0640900-03
Chr07	irgsp1_rep	mRNA	26677080	26679935	.	-	.	ID=Os07t0641000-01;Name=Os07t0641000-01;Locus_id=Os07g0641000;Note=Conserved hypothetical protein.;Transcript_evidence=AK100810 (DDBJ%2C Best hit);ORF_evidence=B9F8K6 (UniProt);NIAS_FLcDNA=J023121O08;TENOR=Os07t0641000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	26679935	26679935	.	-	.	Parent=Os07t0641000-01
Chr07	irgsp1_rep	CDS	26679843	26679934	.	-	0	Parent=Os07t0641000-01
Chr07	irgsp1_rep	CDS	26679488	26679730	.	-	1	Parent=Os07t0641000-01
Chr07	irgsp1_rep	CDS	26679272	26679374	.	-	1	Parent=Os07t0641000-01
Chr07	irgsp1_rep	CDS	26678271	26678500	.	-	0	Parent=Os07t0641000-01
Chr07	irgsp1_rep	CDS	26677493	26677703	.	-	1	Parent=Os07t0641000-01
Chr07	irgsp1_rep	three_prime_UTR	26677080	26677492	.	-	.	Parent=Os07t0641000-01
Chr07	irgsp1_rep	mRNA	26683065	26684804	.	-	.	ID=Os07t0641200-01;Name=Os07t0641200-01;Locus_id=Os07g0641200;CGSNL Gene Symbol=CDPK30;CGSNL Gene Name=CALCIUM-DEPENDENT PROTEIN KINASE 30;Oryzabase Gene Symbol Synonym(s)=OsCDPK30%2C OsCPK30;Oryzabase Gene Name Synonym(s)=calcium-dependent protein kinase;Note=Similar to Calcium/calmodulin-dependent serine/threonine-protein kinase 1.;Transcript_evidence=AK242673 (DDBJ%2C Best hit);ORF_evidence=Q10KY3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),EF-hand-like domain (IPR011992),Serine/threonine-protein kinase-like domain (IPR017442),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J090030P08;Oryzabase=8081;TENOR=Os07t0641200-01;KEGG=Os07t0641200-01 (EC:2.7.11.17)
Chr07	irgsp1_rep	CDS	26684606	26684804	.	-	0	Parent=Os07t0641200-01
Chr07	irgsp1_rep	CDS	26684400	26684512	.	-	2	Parent=Os07t0641200-01
Chr07	irgsp1_rep	CDS	26684079	26684186	.	-	0	Parent=Os07t0641200-01
Chr07	irgsp1_rep	CDS	26683943	26684005	.	-	0	Parent=Os07t0641200-01
Chr07	irgsp1_rep	CDS	26683693	26683860	.	-	0	Parent=Os07t0641200-01
Chr07	irgsp1_rep	CDS	26683481	26683618	.	-	0	Parent=Os07t0641200-01
Chr07	irgsp1_rep	three_prime_UTR	26683065	26683480	.	-	.	Parent=Os07t0641200-01
Chr07	irgsp1_rep	mRNA	26700793	26705242	.	-	.	ID=Os07t0641600-02;Name=Os07t0641600-02;Locus_id=Os07g0641600;Note=SAM (and some other nucleotide) binding motif domain containing protein.;Transcript_evidence=AK068478 (DDBJ%2C Best hit),AK073802 (DDBJ%2C Best hit);ORF_evidence=B8B536 (UniProt);NIAS_FLcDNA=J013152N07,J033066O20;Expression=AK068478;TENOR=Os07t0641600-02;KEGG=Os07t0641600-02
Chr07	irgsp1_rep	five_prime_UTR	26705184	26705242	.	-	.	Parent=Os07t0641600-02
Chr07	irgsp1_rep	CDS	26705071	26705183	.	-	0	Parent=Os07t0641600-02
Chr07	irgsp1_rep	CDS	26704886	26704953	.	-	1	Parent=Os07t0641600-02
Chr07	irgsp1_rep	CDS	26703728	26703847	.	-	2	Parent=Os07t0641600-02
Chr07	irgsp1_rep	CDS	26703571	26703644	.	-	2	Parent=Os07t0641600-02
Chr07	irgsp1_rep	CDS	26703274	26703325	.	-	0	Parent=Os07t0641600-02
Chr07	irgsp1_rep	CDS	26703070	26703171	.	-	2	Parent=Os07t0641600-02
Chr07	irgsp1_rep	CDS	26702807	26702915	.	-	2	Parent=Os07t0641600-02
Chr07	irgsp1_rep	CDS	26701540	26701660	.	-	1	Parent=Os07t0641600-02
Chr07	irgsp1_rep	three_prime_UTR	26700793	26701539	.	-	.	Parent=Os07t0641600-02
Chr07	irgsp1_rep	mRNA	26705903	26707842	.	+	.	ID=Os07t0641700-01;Name=Os07t0641700-01;Locus_id=Os07g0641700;Note=Similar to 10 kDa chaperonin (Protein CPN10) (Protein groES).;Transcript_evidence=AK122129 (DDBJ%2C Best hit),AK119728 (DDBJ%2C Best hit);ORF_evidence=O24186 (UniProt);GO=Biological Process: protein folding (GO:0006457),Cellular Component: cytoplasm (GO:0005737);InterPro=GroES-like (IPR011032),Chaperonin Cpn10 (IPR020818);NIAS_FLcDNA=J033132M21,002-157-H07;Expression=AK122129;TENOR=Os07t0641700-01;KEGG=Os07t0641700-01
Chr07	irgsp1_rep	five_prime_UTR	26705903	26705976	.	+	.	Parent=Os07t0641700-01
Chr07	irgsp1_rep	CDS	26705977	26706081	.	+	0	Parent=Os07t0641700-01
Chr07	irgsp1_rep	CDS	26706594	26706736	.	+	0	Parent=Os07t0641700-01
Chr07	irgsp1_rep	CDS	26707593	26707641	.	+	1	Parent=Os07t0641700-01
Chr07	irgsp1_rep	three_prime_UTR	26707642	26707842	.	+	.	Parent=Os07t0641700-01
Chr07	irgsp1_rep	mRNA	26706634	26707842	.	+	.	ID=Os07t0641700-02;Name=Os07t0641700-02;Locus_id=Os07g0641700;Note=Similar to 10 kDa chaperonin.;Transcript_evidence=AK059154 (DDBJ%2C Best hit);ORF_evidence=O24186 (UniProt);GO=Biological Process: protein folding (GO:0006457),Cellular Component: cytoplasm (GO:0005737);InterPro=GroES-like (IPR011032),Chaperonin Cpn10 (IPR020818);NIAS_FLcDNA=001-023-C02;Expression=AK059154;TENOR=Os07t0641700-02;KEGG=Os07t0641700-02
Chr07	irgsp1_rep	five_prime_UTR	26706634	26706635	.	+	.	Parent=Os07t0641700-02
Chr07	irgsp1_rep	CDS	26706636	26706736	.	+	0	Parent=Os07t0641700-02
Chr07	irgsp1_rep	CDS	26707593	26707641	.	+	1	Parent=Os07t0641700-02
Chr07	irgsp1_rep	three_prime_UTR	26707642	26707842	.	+	.	Parent=Os07t0641700-02
Chr07	irgsp1_rep	mRNA	26708500	26711813	.	-	.	ID=Os07t0641800-01;Name=Os07t0641800-01;Locus_id=Os07g0641800;Note=Conserved hypothetical protein.;Transcript_evidence=AK120167 (DDBJ%2C Best hit);ORF_evidence=Q8GRJ4 (UniProt);NIAS_FLcDNA=J013031K21;Expression=AK120167;TENOR=Os07t0641800-01;KEGG=Os07t0641800-01
Chr07	irgsp1_rep	five_prime_UTR	26710658	26711813	.	-	.	Parent=Os07t0641800-01
Chr07	irgsp1_rep	five_prime_UTR	26709491	26710577	.	-	.	Parent=Os07t0641800-01
Chr07	irgsp1_rep	CDS	26709341	26709490	.	-	0	Parent=Os07t0641800-01
Chr07	irgsp1_rep	CDS	26708818	26708877	.	-	0	Parent=Os07t0641800-01
Chr07	irgsp1_rep	CDS	26708665	26708730	.	-	0	Parent=Os07t0641800-01
Chr07	irgsp1_rep	three_prime_UTR	26708500	26708664	.	-	.	Parent=Os07t0641800-01
Chr07	irgsp1_rep	mRNA	26719124	26727238	.	-	.	ID=Os07t0642100-01;Name=Os07t0642100-01;Locus_id=Os07g0642100;Note=Nucleic acid-binding%2C OB-fold domain containing protein.;Transcript_evidence=AK100505 (DDBJ%2C Best hit);ORF_evidence=Q5JMT3 (UniProt);InterPro=Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=J023099K15;TENOR=Os07t0642100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	26726932	26727238	.	-	.	Parent=Os07t0642100-01
Chr07	irgsp1_rep	five_prime_UTR	26726595	26726632	.	-	.	Parent=Os07t0642100-01
Chr07	irgsp1_rep	five_prime_UTR	26725344	26725434	.	-	.	Parent=Os07t0642100-01
Chr07	irgsp1_rep	five_prime_UTR	26725077	26725232	.	-	.	Parent=Os07t0642100-01
Chr07	irgsp1_rep	five_prime_UTR	26722204	26722210	.	-	.	Parent=Os07t0642100-01
Chr07	irgsp1_rep	CDS	26722060	26722203	.	-	0	Parent=Os07t0642100-01
Chr07	irgsp1_rep	CDS	26721856	26721969	.	-	0	Parent=Os07t0642100-01
Chr07	irgsp1_rep	three_prime_UTR	26721696	26721855	.	-	.	Parent=Os07t0642100-01
Chr07	irgsp1_rep	three_prime_UTR	26721503	26721605	.	-	.	Parent=Os07t0642100-01
Chr07	irgsp1_rep	three_prime_UTR	26721237	26721373	.	-	.	Parent=Os07t0642100-01
Chr07	irgsp1_rep	three_prime_UTR	26721074	26721152	.	-	.	Parent=Os07t0642100-01
Chr07	irgsp1_rep	three_prime_UTR	26720848	26720967	.	-	.	Parent=Os07t0642100-01
Chr07	irgsp1_rep	three_prime_UTR	26720612	26720766	.	-	.	Parent=Os07t0642100-01
Chr07	irgsp1_rep	three_prime_UTR	26720301	26720529	.	-	.	Parent=Os07t0642100-01
Chr07	irgsp1_rep	three_prime_UTR	26719950	26720206	.	-	.	Parent=Os07t0642100-01
Chr07	irgsp1_rep	three_prime_UTR	26719779	26719859	.	-	.	Parent=Os07t0642100-01
Chr07	irgsp1_rep	three_prime_UTR	26719632	26719711	.	-	.	Parent=Os07t0642100-01
Chr07	irgsp1_rep	three_prime_UTR	26719474	26719548	.	-	.	Parent=Os07t0642100-01
Chr07	irgsp1_rep	three_prime_UTR	26719124	26719377	.	-	.	Parent=Os07t0642100-01
Chr07	irgsp1_rep	mRNA	26727638	26729979	.	-	.	ID=Os07t0642200-01;Name=Os07t0642200-01;Locus_id=Os07g0642200;CGSNL Gene Symbol=GELP93;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 93;Oryzabase Gene Symbol Synonym(s)=OsGELP93;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 93;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK058442 (DDBJ%2C Best hit);ORF_evidence=A2YP70 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=001-015-G02;Oryzabase=11043;Expression=AK058442;TENOR=Os07t0642200-01;KEGG=Os07t0642200-01
Chr07	irgsp1_rep	five_prime_UTR	26729943	26729979	.	-	.	Parent=Os07t0642200-01
Chr07	irgsp1_rep	CDS	26729645	26729942	.	-	0	Parent=Os07t0642200-01
Chr07	irgsp1_rep	CDS	26729321	26729542	.	-	2	Parent=Os07t0642200-01
Chr07	irgsp1_rep	CDS	26727708	26728363	.	-	2	Parent=Os07t0642200-01
Chr07	irgsp1_rep	three_prime_UTR	26727638	26727707	.	-	.	Parent=Os07t0642200-01
Chr07	irgsp1_rep	mRNA	26731041	26733282	.	+	.	ID=Os07t0642300-01;Name=Os07t0642300-01;Locus_id=Os07g0642300;Note=TRAPP I complex%2C Bet3 domain containing protein.;Transcript_evidence=AK240664 (DDBJ%2C Best hit);ORF_evidence=B6T6G9 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Transport protein particle (TRAPP) component (IPR007194),TRAPP I complex%2C Bet3 (IPR016721),NO signalling/Golgi transport  ligand-binding domain (IPR024096);NIAS_FLcDNA=J033039I06;TENOR=Os07t0642300-01;KEGG=Os07t0642300-01
Chr07	irgsp1_rep	five_prime_UTR	26731041	26731136	.	+	.	Parent=Os07t0642300-01
Chr07	irgsp1_rep	CDS	26731137	26731196	.	+	0	Parent=Os07t0642300-01
Chr07	irgsp1_rep	CDS	26731292	26731389	.	+	0	Parent=Os07t0642300-01
Chr07	irgsp1_rep	CDS	26732149	26732248	.	+	1	Parent=Os07t0642300-01
Chr07	irgsp1_rep	CDS	26732421	26732603	.	+	0	Parent=Os07t0642300-01
Chr07	irgsp1_rep	CDS	26732927	26733049	.	+	0	Parent=Os07t0642300-01
Chr07	irgsp1_rep	three_prime_UTR	26733050	26733282	.	+	.	Parent=Os07t0642300-01
Chr07	irgsp1_rep	mRNA	26734659	26746290	.	+	.	ID=Os07t0642400-00;Name=Os07t0642400-00;Locus_id=Os07g0642400;Note=Similar to Chromatin remodeling complex subunit.;Transcript_evidence=ab initio prediction;ORF_evidence=XP_002308876.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: helicase activity (GO:0004386),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides (GO:0016818);InterPro=SNF2-related (IPR000330),Helicase%2C C-terminal (IPR001650),Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),DEAD-like helicase (IPR014001),HIP116%2C Rad5p N-terminal (IPR014905),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);TENOR=Os07t0642400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	26734659	26735999	.	+	0	Parent=Os07t0642400-00
Chr07	irgsp1_rep	CDS	26736180	26736492	.	+	0	Parent=Os07t0642400-00
Chr07	irgsp1_rep	CDS	26737441	26738093	.	+	2	Parent=Os07t0642400-00
Chr07	irgsp1_rep	CDS	26746198	26746290	.	+	0	Parent=Os07t0642400-00
Chr07	irgsp1_rep	mRNA	26754722	26757533	.	-	.	ID=Os07t0642600-01;Name=Os07t0642600-01;Locus_id=Os07g0642600;Note=Transcription elongation factor%2C TFIIS/CRSP70%2C N-terminal domain containing protein.;Transcript_evidence=AK121167 (DDBJ%2C Best hit);ORF_evidence=B8B542 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Transcription factor IIS%2C N-terminal (IPR017923);NIAS_FLcDNA=J023080K05;Expression=AK121167;TENOR=Os07t0642600-01;KEGG=Os07t0642600-01
Chr07	irgsp1_rep	five_prime_UTR	26757214	26757533	.	-	.	Parent=Os07t0642600-01
Chr07	irgsp1_rep	CDS	26756815	26757213	.	-	0	Parent=Os07t0642600-01
Chr07	irgsp1_rep	CDS	26756672	26756740	.	-	0	Parent=Os07t0642600-01
Chr07	irgsp1_rep	CDS	26756504	26756586	.	-	0	Parent=Os07t0642600-01
Chr07	irgsp1_rep	CDS	26756343	26756395	.	-	1	Parent=Os07t0642600-01
Chr07	irgsp1_rep	CDS	26756123	26756244	.	-	2	Parent=Os07t0642600-01
Chr07	irgsp1_rep	CDS	26755995	26756040	.	-	0	Parent=Os07t0642600-01
Chr07	irgsp1_rep	CDS	26755591	26755898	.	-	2	Parent=Os07t0642600-01
Chr07	irgsp1_rep	CDS	26755358	26755499	.	-	0	Parent=Os07t0642600-01
Chr07	irgsp1_rep	CDS	26755024	26755154	.	-	2	Parent=Os07t0642600-01
Chr07	irgsp1_rep	three_prime_UTR	26754722	26755023	.	-	.	Parent=Os07t0642600-01
Chr07	irgsp1_rep	mRNA	26768377	26774119	.	+	.	ID=Os07t0642800-01;Name=Os07t0642800-01;Locus_id=Os07g0642800;Note=Similar to plectin-related.;Transcript_evidence=AK073689 (DDBJ%2C Best hit);ORF_evidence=NP_850085.1 (RefSeq);NIAS_FLcDNA=J033059M22;Expression=AK073689;TENOR=Os07t0642800-01;KEGG=Os07t0642800-01
Chr07	irgsp1_rep	five_prime_UTR	26768377	26768557	.	+	.	Parent=Os07t0642800-01
Chr07	irgsp1_rep	five_prime_UTR	26769719	26769776	.	+	.	Parent=Os07t0642800-01
Chr07	irgsp1_rep	CDS	26769777	26770064	.	+	0	Parent=Os07t0642800-01
Chr07	irgsp1_rep	CDS	26770198	26770326	.	+	0	Parent=Os07t0642800-01
Chr07	irgsp1_rep	CDS	26770543	26770635	.	+	0	Parent=Os07t0642800-01
Chr07	irgsp1_rep	CDS	26771161	26771301	.	+	0	Parent=Os07t0642800-01
Chr07	irgsp1_rep	CDS	26771601	26771669	.	+	0	Parent=Os07t0642800-01
Chr07	irgsp1_rep	CDS	26771787	26771870	.	+	0	Parent=Os07t0642800-01
Chr07	irgsp1_rep	CDS	26772364	26772544	.	+	0	Parent=Os07t0642800-01
Chr07	irgsp1_rep	CDS	26772635	26772751	.	+	2	Parent=Os07t0642800-01
Chr07	irgsp1_rep	CDS	26772825	26772883	.	+	2	Parent=Os07t0642800-01
Chr07	irgsp1_rep	CDS	26773175	26773309	.	+	0	Parent=Os07t0642800-01
Chr07	irgsp1_rep	CDS	26773445	26773594	.	+	0	Parent=Os07t0642800-01
Chr07	irgsp1_rep	CDS	26773750	26773788	.	+	0	Parent=Os07t0642800-01
Chr07	irgsp1_rep	three_prime_UTR	26773789	26774119	.	+	.	Parent=Os07t0642800-01
Chr07	irgsp1_rep	mRNA	26775410	26778677	.	-	.	ID=Os07t0642900-01;Name=Os07t0642900-01;Locus_id=Os07g0642900;Note=Bacterial transferase hexapeptide repeat domain containing protein.;Transcript_evidence=AK060158 (DDBJ%2C Best hit);ORF_evidence=NP_175159.1 (RefSeq);GO=Molecular Function: transferase activity (GO:0016740);InterPro=Bacterial transferase hexapeptide repeat (IPR001451),Trimeric LpxA-like (IPR011004);NIAS_FLcDNA=006-310-G03;Expression=AK060158;TENOR=Os07t0642900-01;KEGG=Os07t0642900-01
Chr07	irgsp1_rep	five_prime_UTR	26778596	26778677	.	-	.	Parent=Os07t0642900-01
Chr07	irgsp1_rep	CDS	26778481	26778595	.	-	0	Parent=Os07t0642900-01
Chr07	irgsp1_rep	CDS	26777770	26777913	.	-	2	Parent=Os07t0642900-01
Chr07	irgsp1_rep	CDS	26776809	26776934	.	-	2	Parent=Os07t0642900-01
Chr07	irgsp1_rep	CDS	26776411	26776562	.	-	2	Parent=Os07t0642900-01
Chr07	irgsp1_rep	CDS	26775661	26775945	.	-	0	Parent=Os07t0642900-01
Chr07	irgsp1_rep	three_prime_UTR	26775410	26775660	.	-	.	Parent=Os07t0642900-01
Chr07	irgsp1_rep	mRNA	26780005	26781121	.	-	.	ID=Os07t0642950-00;Name=Os07t0642950-00;Locus_id=Os07g0642950;Note=Hypothetical gene.;Transcript_evidence=EU966483 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0642950-00;KEGG=Os07t0642950-00
Chr07	irgsp1_rep	five_prime_UTR	26781112	26781121	.	-	.	Parent=Os07t0642950-00
Chr07	irgsp1_rep	CDS	26780797	26781111	.	-	0	Parent=Os07t0642950-00
Chr07	irgsp1_rep	three_prime_UTR	26780005	26780796	.	-	.	Parent=Os07t0642950-00
Chr07	irgsp1_rep	mRNA	26780049	26781207	.	+	.	ID=Os07t0643000-01;Name=Os07t0643000-01;Locus_id=Os07g0643000;Note=Alpha/beta hydrolase fold-3 domain containing protein.;Transcript_evidence=AK287473 (DDBJ%2C Best hit);ORF_evidence=NP_001151174.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=J043022L14;TENOR=Os07t0643000-01;KEGG=Os07t0643000-01
Chr07	irgsp1_rep	five_prime_UTR	26780049	26780076	.	+	.	Parent=Os07t0643000-01
Chr07	irgsp1_rep	CDS	26780077	26781132	.	+	0	Parent=Os07t0643000-01
Chr07	irgsp1_rep	three_prime_UTR	26781133	26781207	.	+	.	Parent=Os07t0643000-01
Chr07	irgsp1_rep	mRNA	26782880	26784563	.	-	.	ID=Os07t0643100-01;Name=Os07t0643100-01;Locus_id=Os07g0643100;Note=Alpha/beta hydrolase fold-3 domain containing protein.;Transcript_evidence=AK109004 (DDBJ%2C Best hit);ORF_evidence=NP_001151174.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=002-153-H02;Expression=AK109004;TENOR=Os07t0643100-01;KEGG=Os07t0643100-01
Chr07	irgsp1_rep	five_prime_UTR	26784490	26784563	.	-	.	Parent=Os07t0643100-01
Chr07	irgsp1_rep	CDS	26783452	26784489	.	-	0	Parent=Os07t0643100-01
Chr07	irgsp1_rep	three_prime_UTR	26782880	26783451	.	-	.	Parent=Os07t0643100-01
Chr07	irgsp1_rep	mRNA	26790870	26792040	.	-	.	ID=Os07t0643400-01;Name=Os07t0643400-01;Locus_id=Os07g0643400;Note=Alpha/beta hydrolase fold-3 domain containing protein.;Transcript_evidence=AK109437 (DDBJ%2C Best hit),AK061012 (DDBJ%2C Best hit);ORF_evidence=A3BMQ5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=006-310-B02,006-204-B04;TENOR=Os07t0643400-01
Chr07	irgsp1_rep	five_prime_UTR	26792020	26792040	.	-	.	Parent=Os07t0643400-01
Chr07	irgsp1_rep	CDS	26790952	26792019	.	-	0	Parent=Os07t0643400-01
Chr07	irgsp1_rep	three_prime_UTR	26790870	26790951	.	-	.	Parent=Os07t0643400-01
Chr07	irgsp1_rep	mRNA	26790976	26792114	.	+	.	ID=Os07t0643500-01;Name=Os07t0643500-01;Locus_id=Os07g0643500;Note=Hypothetical protein.;Transcript_evidence=AK111373 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-182-A08;TENOR=Os07t0643500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	26790976	26792100	.	+	0	Parent=Os07t0643500-01
Chr07	irgsp1_rep	three_prime_UTR	26792101	26792114	.	+	.	Parent=Os07t0643500-01
Chr07	irgsp1_rep	mRNA	26796193	26797512	.	-	.	ID=Os07t0643700-01;Name=Os07t0643700-01;Locus_id=Os07g0643700;Note=Alpha/beta hydrolase fold-3 domain containing protein.;Transcript_evidence=AK109637 (DDBJ%2C Best hit);ORF_evidence=A3BMQ7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=002-138-E04;Expression=AK109637;TENOR=Os07t0643700-01;KEGG=Os07t0643700-01
Chr07	irgsp1_rep	five_prime_UTR	26797441	26797512	.	-	.	Parent=Os07t0643700-01
Chr07	irgsp1_rep	CDS	26796352	26797440	.	-	0	Parent=Os07t0643700-01
Chr07	irgsp1_rep	three_prime_UTR	26796193	26796351	.	-	.	Parent=Os07t0643700-01
Chr07	irgsp1_rep	mRNA	26802460	26803443	.	+	.	ID=Os07t0643800-01;Name=Os07t0643800-01;Locus_id=Os07g0643800;Note=Similar to Dirigent protein.;Transcript_evidence=AK103858 (DDBJ%2C Best hit);ORF_evidence=A3BMQ8 (UniProt);InterPro=Plant disease resistance response protein (IPR004265);NIAS_FLcDNA=J033148P14;Expression=AK103858;TENOR=Os07t0643800-01;KEGG=Os07t0643800-01
Chr07	irgsp1_rep	five_prime_UTR	26802460	26802481	.	+	.	Parent=Os07t0643800-01
Chr07	irgsp1_rep	CDS	26802482	26803126	.	+	0	Parent=Os07t0643800-01
Chr07	irgsp1_rep	three_prime_UTR	26803127	26803443	.	+	.	Parent=Os07t0643800-01
Chr07	irgsp1_rep	mRNA	26806424	26809048	.	-	.	ID=Os07t0644000-01;Name=Os07t0644000-01;Locus_id=Os07g0644000;Note=ATP12%2C ATPase F1F0-assembly protein domain containing protein.;Transcript_evidence=AK064653 (DDBJ%2C Best hit);ORF_evidence=B6TXI2 (UniProt);GO=Biological Process: proton-transporting ATP synthase complex assembly (GO:0043461);InterPro=ATP12%2C ATPase F1F0-assembly protein (IPR011419),ATPase assembly%2C ATP12%2C domain (IPR023335);NIAS_FLcDNA=002-114-F04;Expression=AK064653;TENOR=Os07t0644000-01;KEGG=Os07t0644000-01
Chr07	irgsp1_rep	CDS	26808644	26809048	.	-	0	Parent=Os07t0644000-01
Chr07	irgsp1_rep	CDS	26807271	26807445	.	-	0	Parent=Os07t0644000-01
Chr07	irgsp1_rep	CDS	26806834	26807111	.	-	2	Parent=Os07t0644000-01
Chr07	irgsp1_rep	CDS	26806650	26806757	.	-	0	Parent=Os07t0644000-01
Chr07	irgsp1_rep	three_prime_UTR	26806424	26806649	.	-	.	Parent=Os07t0644000-01
Chr07	irgsp1_rep	mRNA	26809800	26813252	.	+	.	ID=Os07t0644100-01;Name=Os07t0644100-01;Locus_id=Os07g0644100;CGSNL Gene Symbol=BZIP60;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 60;Oryzabase Gene Symbol Synonym(s)=OsbZIP60%2C bZIP60;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 60;Note=bZIP transcription factor%2C bZIP-1 domain containing protein.;Transcript_evidence=AK121898 (DDBJ%2C Best hit);ORF_evidence=B6U9M3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);NIAS_FLcDNA=J033105F09;Oryzabase=10080;Expression=AK121898;TENOR=Os07t0644100-01;KEGG=Os07t0644100-01
Chr07	irgsp1_rep	five_prime_UTR	26809800	26809917	.	+	.	Parent=Os07t0644100-01
Chr07	irgsp1_rep	CDS	26809918	26811163	.	+	0	Parent=Os07t0644100-01
Chr07	irgsp1_rep	CDS	26812647	26813107	.	+	2	Parent=Os07t0644100-01
Chr07	irgsp1_rep	three_prime_UTR	26813108	26813252	.	+	.	Parent=Os07t0644100-01
Chr07	irgsp1_rep	mRNA	26816098	26819115	.	+	.	ID=Os07t0644200-01;Name=Os07t0644200-01;Locus_id=Os07g0644200;Note=Similar to NodH (Fragment).;Transcript_evidence=AK066335 (DDBJ%2C Best hit);ORF_evidence=NP_190631.2 (RefSeq);GO=Molecular Function: sulfotransferase activity (GO:0008146);InterPro=Sulfotransferase domain (IPR000863);NIAS_FLcDNA=J013068F02;Expression=AK066335;TENOR=Os07t0644200-01;KEGG=Os07t0644200-01
Chr07	irgsp1_rep	five_prime_UTR	26816098	26816149	.	+	.	Parent=Os07t0644200-01
Chr07	irgsp1_rep	five_prime_UTR	26816753	26816851	.	+	.	Parent=Os07t0644200-01
Chr07	irgsp1_rep	CDS	26816852	26816854	.	+	0	Parent=Os07t0644200-01
Chr07	irgsp1_rep	CDS	26816930	26817168	.	+	0	Parent=Os07t0644200-01
Chr07	irgsp1_rep	CDS	26817269	26817527	.	+	1	Parent=Os07t0644200-01
Chr07	irgsp1_rep	CDS	26817939	26818118	.	+	0	Parent=Os07t0644200-01
Chr07	irgsp1_rep	CDS	26818517	26818672	.	+	0	Parent=Os07t0644200-01
Chr07	irgsp1_rep	CDS	26818754	26818930	.	+	0	Parent=Os07t0644200-01
Chr07	irgsp1_rep	three_prime_UTR	26818931	26819115	.	+	.	Parent=Os07t0644200-01
Chr07	irgsp1_rep	mRNA	26816193	26817051	.	+	.	ID=Os07t0644200-02;Name=Os07t0644200-02;Locus_id=Os07g0644200;Note=Hypothetical conserved gene.;Transcript_evidence=AK062884 (DDBJ%2C Best hit);ORF_evidence=NP_001131369.1 (RefSeq);NIAS_FLcDNA=001-108-D08;TENOR=Os07t0644200-02
Chr07	irgsp1_rep	five_prime_UTR	26816193	26816476	.	+	.	Parent=Os07t0644200-02
Chr07	irgsp1_rep	five_prime_UTR	26816753	26816851	.	+	.	Parent=Os07t0644200-02
Chr07	irgsp1_rep	CDS	26816852	26816854	.	+	0	Parent=Os07t0644200-02
Chr07	irgsp1_rep	CDS	26816930	26817051	.	+	0	Parent=Os07t0644200-02
Chr07	irgsp1_rep	mRNA	26819447	26824258	.	-	.	ID=Os07t0644300-02;Name=Os07t0644300-02;Locus_id=Os07g0644300;Oryzabase Gene Symbol Synonym(s)=XAB2;Note=Similar to XPA-binding protein 2 (Adapter protein ATH-55).;Transcript_evidence=AK066726 (DDBJ%2C Best hit),AK101483 (DDBJ%2C Best hit);ORF_evidence=NP_198226.1 (RefSeq);NIAS_FLcDNA=J013074K22,J033041F21;Oryzabase=21271;Expression=AK066726;TENOR=Os07t0644300-02;KEGG=Os07t0644300-02
Chr07	irgsp1_rep	five_prime_UTR	26824212	26824258	.	-	.	Parent=Os07t0644300-02
Chr07	irgsp1_rep	CDS	26823010	26824211	.	-	0	Parent=Os07t0644300-02
Chr07	irgsp1_rep	CDS	26822106	26822431	.	-	1	Parent=Os07t0644300-02
Chr07	irgsp1_rep	CDS	26821829	26822013	.	-	2	Parent=Os07t0644300-02
Chr07	irgsp1_rep	CDS	26821566	26821736	.	-	0	Parent=Os07t0644300-02
Chr07	irgsp1_rep	CDS	26820781	26820981	.	-	0	Parent=Os07t0644300-02
Chr07	irgsp1_rep	CDS	26820214	26820465	.	-	0	Parent=Os07t0644300-02
Chr07	irgsp1_rep	CDS	26819658	26820116	.	-	0	Parent=Os07t0644300-02
Chr07	irgsp1_rep	three_prime_UTR	26819447	26819657	.	-	.	Parent=Os07t0644300-02
Chr07	irgsp1_rep	mRNA	26819493	26824263	.	+	.	ID=Os07t0644400-00;Name=Os07t0644400-00;Locus_id=Os07g0644400;Note=Hypothetical protein.;Transcript_evidence=tplb0045j05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0644400-00
Chr07	irgsp1_rep	five_prime_UTR	26819493	26820116	.	+	.	Parent=Os07t0644400-00
Chr07	irgsp1_rep	five_prime_UTR	26820214	26820446	.	+	.	Parent=Os07t0644400-00
Chr07	irgsp1_rep	five_prime_UTR	26820761	26820971	.	+	.	Parent=Os07t0644400-00
Chr07	irgsp1_rep	five_prime_UTR	26821562	26821738	.	+	.	Parent=Os07t0644400-00
Chr07	irgsp1_rep	five_prime_UTR	26821835	26822013	.	+	.	Parent=Os07t0644400-00
Chr07	irgsp1_rep	five_prime_UTR	26822106	26822420	.	+	.	Parent=Os07t0644400-00
Chr07	irgsp1_rep	five_prime_UTR	26823000	26823029	.	+	.	Parent=Os07t0644400-00
Chr07	irgsp1_rep	CDS	26823030	26824263	.	+	0	Parent=Os07t0644400-00
Chr07	irgsp1_rep	mRNA	26844638	26850135	.	-	.	ID=Os07t0644550-00;Name=Os07t0644550-00;Locus_id=Os07g0644550;Note=Hypothetical protein.;Transcript_evidence=tplb0042c08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0644550-00
Chr07	irgsp1_rep	five_prime_UTR	26849666	26850135	.	-	.	Parent=Os07t0644550-00
Chr07	irgsp1_rep	five_prime_UTR	26849275	26849425	.	-	.	Parent=Os07t0644550-00
Chr07	irgsp1_rep	CDS	26849273	26849274	.	-	0	Parent=Os07t0644550-00
Chr07	irgsp1_rep	CDS	26848997	26849180	.	-	1	Parent=Os07t0644550-00
Chr07	irgsp1_rep	CDS	26848550	26848606	.	-	0	Parent=Os07t0644550-00
Chr07	irgsp1_rep	three_prime_UTR	26848449	26848549	.	-	.	Parent=Os07t0644550-00
Chr07	irgsp1_rep	three_prime_UTR	26847444	26848074	.	-	.	Parent=Os07t0644550-00
Chr07	irgsp1_rep	three_prime_UTR	26847085	26847284	.	-	.	Parent=Os07t0644550-00
Chr07	irgsp1_rep	three_prime_UTR	26844785	26845086	.	-	.	Parent=Os07t0644550-00
Chr07	irgsp1_rep	three_prime_UTR	26844638	26844727	.	-	.	Parent=Os07t0644550-00
Chr07	irgsp1_rep	mRNA	26844725	26850314	.	+	.	ID=Os07t0644600-01;Name=Os07t0644600-01;Locus_id=Os07g0644600;Note=CytoChrome P450 family protein.;Transcript_evidence=AK121053 (DDBJ%2C Best hit);ORF_evidence=NP_001153093.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J023055N06;Expression=AK121053;TENOR=Os07t0644600-01;KEGG=Os07t0644600-01
Chr07	irgsp1_rep	five_prime_UTR	26844725	26844793	.	+	.	Parent=Os07t0644600-01
Chr07	irgsp1_rep	CDS	26844794	26845070	.	+	0	Parent=Os07t0644600-01
Chr07	irgsp1_rep	CDS	26847087	26847286	.	+	2	Parent=Os07t0644600-01
Chr07	irgsp1_rep	CDS	26847446	26848087	.	+	0	Parent=Os07t0644600-01
Chr07	irgsp1_rep	CDS	26848468	26848618	.	+	0	Parent=Os07t0644600-01
Chr07	irgsp1_rep	CDS	26849014	26849163	.	+	2	Parent=Os07t0644600-01
Chr07	irgsp1_rep	CDS	26849255	26849427	.	+	2	Parent=Os07t0644600-01
Chr07	irgsp1_rep	CDS	26849668	26849775	.	+	0	Parent=Os07t0644600-01
Chr07	irgsp1_rep	three_prime_UTR	26849776	26850314	.	+	.	Parent=Os07t0644600-01
Chr07	irgsp1_rep	mRNA	26852741	26854622	.	+	.	ID=Os07t0644700-00;Name=Os07t0644700-00;Locus_id=Os07g0644700;Oryzabase Gene Symbol Synonym(s)=Os_F0606;Note=Hypothetical conserved gene.;Transcript_evidence=AK251738 (DDBJ);ORF_evidence=A2YP88 (UniProt);Oryzabase=17520;TENOR=Os07t0644700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	26852741	26852873	.	+	.	Parent=Os07t0644700-00
Chr07	irgsp1_rep	CDS	26852874	26853635	.	+	0	Parent=Os07t0644700-00
Chr07	irgsp1_rep	CDS	26853977	26854126	.	+	0	Parent=Os07t0644700-00
Chr07	irgsp1_rep	CDS	26854239	26854622	.	+	0	Parent=Os07t0644700-00
Chr07	irgsp1_rep	mRNA	26880078	26881843	.	+	.	ID=Os07t0644900-00;Name=Os07t0644900-00;Locus_id=Os07g0644900;Note=Conserved hypothetical protein.;Transcript_evidence=AK357045 (DDBJ);ORF_evidence=A2YP88 (UniProt);TENOR=Os07t0644900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	26880078	26880204	.	+	.	Parent=Os07t0644900-00
Chr07	irgsp1_rep	CDS	26880205	26880603	.	+	0	Parent=Os07t0644900-00
Chr07	irgsp1_rep	three_prime_UTR	26880604	26881093	.	+	.	Parent=Os07t0644900-00
Chr07	irgsp1_rep	three_prime_UTR	26881276	26881542	.	+	.	Parent=Os07t0644900-00
Chr07	irgsp1_rep	three_prime_UTR	26881655	26881843	.	+	.	Parent=Os07t0644900-00
Chr07	irgsp1_rep	mRNA	26882080	26883927	.	-	.	ID=Os07t0645000-01;Name=Os07t0645000-01;Locus_id=Os07g0645000;Note=Allergen V5/Tpx-1 related family protein.;Transcript_evidence=AK242254 (DDBJ%2C Best hit);ORF_evidence=NP_001060451.2 (RefSeq);NIAS_FLcDNA=J075182P04;TENOR=Os07t0645000-01;KEGG=Os07t0645000-01
Chr07	irgsp1_rep	five_prime_UTR	26883918	26883927	.	-	.	Parent=Os07t0645000-01
Chr07	irgsp1_rep	CDS	26883845	26883917	.	-	0	Parent=Os07t0645000-01
Chr07	irgsp1_rep	CDS	26882404	26882915	.	-	2	Parent=Os07t0645000-01
Chr07	irgsp1_rep	three_prime_UTR	26882080	26882403	.	-	.	Parent=Os07t0645000-01
Chr07	irgsp1_rep	mRNA	26882474	26882926	.	+	.	ID=Os07t0645050-00;Name=Os07t0645050-00;Locus_id=Os07g0645050;Note=Non-protein coding transcript.;Transcript_evidence=BT018245 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0645050-00
Chr07	irgsp1_rep	exon	26882474	26882926	.	+	.	Parent=Os07t0645050-00
Chr07	irgsp1_rep	mRNA	26886336	26891049	.	-	.	ID=Os07t0645100-01;Name=Os07t0645100-01;Locus_id=Os07g0645100;Note=Phosphatidylinositol 3- and 4-kinase%2C catalytic domain containing protein.;Transcript_evidence=AK106607 (DDBJ%2C Best hit);ORF_evidence=NP_179383.2 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Phosphatidylinositol 3-/4-kinase%2C catalytic (IPR000403),PIK-related kinase%2C FAT (IPR003151),PIK-related kinase%2C FATC (IPR003152),Protein kinase-like domain (IPR011009),Tetratricopeptide-like helical (IPR011990),PIK-related kinase (IPR014009);NIAS_FLcDNA=002-112-E09;Expression=AK106607;TENOR=Os07t0645100-01;KEGG=Os07t0645100-01
Chr07	irgsp1_rep	five_prime_UTR	26891048	26891049	.	-	.	Parent=Os07t0645100-01
Chr07	irgsp1_rep	CDS	26890865	26891047	.	-	0	Parent=Os07t0645100-01
Chr07	irgsp1_rep	CDS	26890502	26890792	.	-	0	Parent=Os07t0645100-01
Chr07	irgsp1_rep	CDS	26889942	26890406	.	-	0	Parent=Os07t0645100-01
Chr07	irgsp1_rep	CDS	26888865	26889296	.	-	0	Parent=Os07t0645100-01
Chr07	irgsp1_rep	CDS	26888420	26888698	.	-	0	Parent=Os07t0645100-01
Chr07	irgsp1_rep	CDS	26887910	26888312	.	-	0	Parent=Os07t0645100-01
Chr07	irgsp1_rep	CDS	26887684	26887832	.	-	2	Parent=Os07t0645100-01
Chr07	irgsp1_rep	CDS	26887317	26887523	.	-	0	Parent=Os07t0645100-01
Chr07	irgsp1_rep	CDS	26886556	26886675	.	-	0	Parent=Os07t0645100-01
Chr07	irgsp1_rep	three_prime_UTR	26886336	26886555	.	-	.	Parent=Os07t0645100-01
Chr07	irgsp1_rep	mRNA	26903009	26908544	.	-	.	ID=Os07t0645200-01;Name=Os07t0645200-01;Locus_id=Os07g0645200;Note=Similar to FAT domain-containing protein.;Transcript_evidence=AK069294 (DDBJ%2C Best hit);ORF_evidence=XP_002886137.1 (RefSeq);NIAS_FLcDNA=J023013H21;TENOR=Os07t0645200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	26908193	26908544	.	-	.	Parent=Os07t0645200-01
Chr07	irgsp1_rep	five_prime_UTR	26906700	26907427	.	-	.	Parent=Os07t0645200-01
Chr07	irgsp1_rep	five_prime_UTR	26906503	26906626	.	-	.	Parent=Os07t0645200-01
Chr07	irgsp1_rep	CDS	26906494	26906502	.	-	0	Parent=Os07t0645200-01
Chr07	irgsp1_rep	CDS	26906322	26906404	.	-	0	Parent=Os07t0645200-01
Chr07	irgsp1_rep	CDS	26905573	26905681	.	-	1	Parent=Os07t0645200-01
Chr07	irgsp1_rep	CDS	26905037	26905132	.	-	0	Parent=Os07t0645200-01
Chr07	irgsp1_rep	CDS	26904785	26904847	.	-	0	Parent=Os07t0645200-01
Chr07	irgsp1_rep	CDS	26904650	26904709	.	-	0	Parent=Os07t0645200-01
Chr07	irgsp1_rep	CDS	26904100	26904168	.	-	0	Parent=Os07t0645200-01
Chr07	irgsp1_rep	CDS	26903578	26903659	.	-	0	Parent=Os07t0645200-01
Chr07	irgsp1_rep	CDS	26903438	26903490	.	-	2	Parent=Os07t0645200-01
Chr07	irgsp1_rep	CDS	26903286	26903348	.	-	0	Parent=Os07t0645200-01
Chr07	irgsp1_rep	CDS	26903009	26903204	.	-	0	Parent=Os07t0645200-01
Chr07	irgsp1_rep	mRNA	26911529	26912445	.	+	.	ID=Os07t0645300-01;Name=Os07t0645300-01;Locus_id=Os07g0645300;Note=Protein of unknown function DUF679 family protein.;Transcript_evidence=AK108931 (DDBJ%2C Best hit);ORF_evidence=A2YP92 (UniProt);InterPro=Protein of unknown function DUF679 (IPR007770);NIAS_FLcDNA=002-153-A06;Expression=AK108931;TENOR=Os07t0645300-01;KEGG=Os07t0645300-01
Chr07	irgsp1_rep	five_prime_UTR	26911529	26911624	.	+	.	Parent=Os07t0645300-01
Chr07	irgsp1_rep	CDS	26911625	26912191	.	+	0	Parent=Os07t0645300-01
Chr07	irgsp1_rep	three_prime_UTR	26912192	26912445	.	+	.	Parent=Os07t0645300-01
Chr07	irgsp1_rep	mRNA	26913496	26917496	.	+	.	ID=Os07t0645400-01;Name=Os07t0645400-01;Locus_id=Os07g0645400;Oryzabase Gene Name Synonym(s)=NADH dehydrogenase (ubiquinone);Note=Similar to NADH dehydrogenase.;Transcript_evidence=AK100730 (DDBJ%2C Best hit),AK065185 (DDBJ%2C Best hit);ORF_evidence=NP_001148767.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: NADH dehydrogenase (ubiquinone) activity (GO:0008137),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity%2C acting on NADH or NADPH (GO:0016651),Molecular Function: NAD binding (GO:0051287),Molecular Function: 4 iron%2C 4 sulfur cluster binding (GO:0051539);InterPro=NADH:ubiquinone oxidoreductase%2C 51kDa subunit%2C conserved site (IPR001949),NADH ubiquinone oxidoreductase%2C F subunit (IPR011537),NADH:ubiquinone oxidoreductase%2C 51kDa subunit (IPR011538),Soluble ligand binding domain (IPR019554),NADH ubiquinone oxidoreductase%2C F subunit%2C iron sulphur binding (IPR019575);NIAS_FLcDNA=J023117I06,J013002D23;Oryzabase=17641;TENOR=Os07t0645400-01
Chr07	irgsp1_rep	five_prime_UTR	26913496	26913630	.	+	.	Parent=Os07t0645400-01
Chr07	irgsp1_rep	CDS	26913631	26913684	.	+	0	Parent=Os07t0645400-01
Chr07	irgsp1_rep	CDS	26915294	26916754	.	+	0	Parent=Os07t0645400-01
Chr07	irgsp1_rep	three_prime_UTR	26916755	26917496	.	+	.	Parent=Os07t0645400-01
Chr07	irgsp1_rep	mRNA	26915805	26916914	.	+	.	ID=Os07t0645400-02;Name=Os07t0645400-02;Locus_id=Os07g0645400;Oryzabase Gene Name Synonym(s)=NADH dehydrogenase (ubiquinone);Note=Similar to NADH-ubiquinone oxidoreductase 51 kDa subunit.;Transcript_evidence=AK119179 (DDBJ%2C Best hit);ORF_evidence=NP_001148767.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: NADH dehydrogenase (ubiquinone) activity (GO:0008137),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity%2C acting on NADH or NADPH (GO:0016651),Molecular Function: 4 iron%2C 4 sulfur cluster binding (GO:0051539);InterPro=NADH:ubiquinone oxidoreductase%2C 51kDa subunit%2C conserved site (IPR001949),NADH:ubiquinone oxidoreductase%2C 51kDa subunit (IPR011538),Soluble ligand binding domain (IPR019554),NADH ubiquinone oxidoreductase%2C F subunit%2C iron sulphur binding (IPR019575);NIAS_FLcDNA=001-037-G09;Oryzabase=17641;Expression=AK119179;TENOR=Os07t0645400-02;KEGG=Os07t0645400-02 (EC:1.6.5.3%2C EC:1.6.99.3)
Chr07	irgsp1_rep	five_prime_UTR	26915805	26915806	.	+	.	Parent=Os07t0645400-02
Chr07	irgsp1_rep	CDS	26915807	26916754	.	+	0	Parent=Os07t0645400-02
Chr07	irgsp1_rep	three_prime_UTR	26916755	26916914	.	+	.	Parent=Os07t0645400-02
Chr07	irgsp1_rep	mRNA	26918373	26923890	.	-	.	ID=Os07t0645500-00;Name=Os07t0645500-00;Locus_id=Os07g0645500;Note=Similar to predicted protein.;Transcript_evidence=BT063093 (DDBJ);ORF_evidence=NP_188790.2 (RefSeq);InterPro=Endonuclease/exonuclease/phosphatase (IPR005135);TENOR=Os07t0645500-00;KEGG=Os07t0645500-00
Chr07	irgsp1_rep	CDS	26923142	26923890	.	-	0	Parent=Os07t0645500-00
Chr07	irgsp1_rep	CDS	26919144	26919351	.	-	1	Parent=Os07t0645500-00
Chr07	irgsp1_rep	CDS	26918905	26919034	.	-	0	Parent=Os07t0645500-00
Chr07	irgsp1_rep	CDS	26918373	26918623	.	-	2	Parent=Os07t0645500-00
Chr07	irgsp1_rep	mRNA	26937567	26939404	.	+	.	ID=Os07t0645701-00;Name=Os07t0645701-00;Locus_id=Os07g0645701;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK335129 (DDBJ);ORF_evidence=Q7EYL2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);TENOR=Os07t0645701-00
Chr07	irgsp1_rep	five_prime_UTR	26937567	26937581	.	+	.	Parent=Os07t0645701-00
Chr07	irgsp1_rep	CDS	26937582	26938475	.	+	0	Parent=Os07t0645701-00
Chr07	irgsp1_rep	CDS	26938758	26938907	.	+	0	Parent=Os07t0645701-00
Chr07	irgsp1_rep	CDS	26939039	26939404	.	+	0	Parent=Os07t0645701-00
Chr07	irgsp1_rep	mRNA	26942081	26950371	.	-	.	ID=Os07t0645900-00;Name=Os07t0645900-00;Locus_id=Os07g0645900;Note=Protein of unknown function DUF1677%2C Oryza sativa domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001175312.1 (RefSeq);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);TENOR=Os07t0645900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	26949960	26950371	.	-	0	Parent=Os07t0645900-00
Chr07	irgsp1_rep	CDS	26949210	26949340	.	-	2	Parent=Os07t0645900-00
Chr07	irgsp1_rep	CDS	26942081	26942647	.	-	0	Parent=Os07t0645900-00
Chr07	irgsp1_rep	mRNA	26961910	26962724	.	+	.	ID=Os07t0646000-01;Name=Os07t0646000-01;Locus_id=Os07g0646000;Note=Conserved hypothetical protein.;Transcript_evidence=AK059345 (DDBJ%2C Best hit);ORF_evidence=B9FUI5 (UniProt);NIAS_FLcDNA=001-026-B10;TENOR=Os07t0646000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	26961910	26961911	.	+	.	Parent=Os07t0646000-01
Chr07	irgsp1_rep	CDS	26961912	26962475	.	+	0	Parent=Os07t0646000-01
Chr07	irgsp1_rep	three_prime_UTR	26962476	26962724	.	+	.	Parent=Os07t0646000-01
Chr07	irgsp1_rep	mRNA	26963443	26967055	.	-	.	ID=Os07t0646100-00;Name=Os07t0646100-00;Locus_id=Os07g0646100;Oryzabase Gene Symbol Synonym(s)=OsPP2C65%2C PP2C65%2C OsPP98;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C65%2C protein phosphatase 2C 65%2C protein phosphatase 98;Note=Similar to predicted protein.;Transcript_evidence=EU953454 (DDBJ);ORF_evidence=Q8H2T0 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);Oryzabase=17938;TENOR=Os07t0646100-00;KEGG=Os07t0646100-00
Chr07	irgsp1_rep	five_prime_UTR	26967051	26967055	.	-	.	Parent=Os07t0646100-00
Chr07	irgsp1_rep	CDS	26966139	26967050	.	-	0	Parent=Os07t0646100-00
Chr07	irgsp1_rep	CDS	26963801	26964013	.	-	0	Parent=Os07t0646100-00
Chr07	irgsp1_rep	three_prime_UTR	26963666	26963800	.	-	.	Parent=Os07t0646100-00
Chr07	irgsp1_rep	three_prime_UTR	26963443	26963591	.	-	.	Parent=Os07t0646100-00
Chr07	irgsp1_rep	mRNA	26972587	26974902	.	+	.	ID=Os07t0646200-00;Name=Os07t0646200-00;Locus_id=Os07g0646200;Note=Zinc finger%2C SWIM-type domain containing protein.;Transcript_evidence=tplb0045a16 (Wheat FLcDNA);ORF_evidence=NP_001175313.1 (RefSeq);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);Oryzabase=22531;TENOR=Os07t0646200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	26972587	26974899	.	+	0	Parent=Os07t0646200-00
Chr07	irgsp1_rep	three_prime_UTR	26974900	26974902	.	+	.	Parent=Os07t0646200-00
Chr07	irgsp1_rep	mRNA	26981889	26983876	.	-	.	ID=Os07t0646300-01;Name=Os07t0646300-01;Locus_id=Os07g0646300;Oryzabase Gene Symbol Synonym(s)=qHMS7 ORF1;Oryzabase Gene Name Synonym(s)=QTL for hybrid male sterility on Chromosome 7 ORF1;Note=Hypothetical conserved gene.;Transcript_evidence=AK063331 (DDBJ%2C Best hit);ORF_evidence=NP_001060464.1 (RefSeq);NIAS_FLcDNA=001-114-A02;Oryzabase=22484;Expression=AK063331;TENOR=Os07t0646300-01;KEGG=Os07t0646300-01
Chr07	irgsp1_rep	five_prime_UTR	26983843	26983876	.	-	.	Parent=Os07t0646300-01
Chr07	irgsp1_rep	CDS	26983664	26983842	.	-	0	Parent=Os07t0646300-01
Chr07	irgsp1_rep	CDS	26982711	26983254	.	-	1	Parent=Os07t0646300-01
Chr07	irgsp1_rep	three_prime_UTR	26981889	26982710	.	-	.	Parent=Os07t0646300-01
Chr07	irgsp1_rep	mRNA	26978363	26983862	.	-	.	ID=Os07t0646300-02;Name=Os07t0646300-02;Locus_id=Os07g0646300;Oryzabase Gene Symbol Synonym(s)=qHMS7 ORF1;Oryzabase Gene Name Synonym(s)=QTL for hybrid male sterility on Chromosome 7 ORF1;Note=Conserved hypothetical protein.;Transcript_evidence=AK066044 (DDBJ%2C Best hit);ORF_evidence=A3BMT7 (UniProt);NIAS_FLcDNA=J013048P13;Oryzabase=22484;Expression=AK066044;TENOR=Os07t0646300-02;KEGG=Os07t0646300-02
Chr07	irgsp1_rep	five_prime_UTR	26983843	26983862	.	-	.	Parent=Os07t0646300-02
Chr07	irgsp1_rep	CDS	26983664	26983842	.	-	0	Parent=Os07t0646300-02
Chr07	irgsp1_rep	CDS	26982827	26983254	.	-	1	Parent=Os07t0646300-02
Chr07	irgsp1_rep	CDS	26981526	26981764	.	-	2	Parent=Os07t0646300-02
Chr07	irgsp1_rep	CDS	26978746	26979309	.	-	0	Parent=Os07t0646300-02
Chr07	irgsp1_rep	three_prime_UTR	26978363	26978745	.	-	.	Parent=Os07t0646300-02
Chr07	irgsp1_rep	mRNA	26984185	26988333	.	+	.	ID=Os07t0646400-01;Name=Os07t0646400-01;Locus_id=Os07g0646400;Oryzabase Gene Symbol Synonym(s)=qHMS7 ORF2;Oryzabase Gene Name Synonym(s)=QTL for hybrid male sterility on Chromosome 7 ORF2;Note=Conserved hypothetical protein.;Transcript_evidence=AK119777 (DDBJ%2C Best hit);ORF_evidence=Q7EYL5 (UniProt);NIAS_FLcDNA=002-172-H11;Oryzabase=22482;TENOR=Os07t0646400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	26984185	26984751	.	+	.	Parent=Os07t0646400-01
Chr07	irgsp1_rep	CDS	26984752	26984886	.	+	0	Parent=Os07t0646400-01
Chr07	irgsp1_rep	CDS	26985835	26985981	.	+	0	Parent=Os07t0646400-01
Chr07	irgsp1_rep	three_prime_UTR	26985982	26986657	.	+	.	Parent=Os07t0646400-01
Chr07	irgsp1_rep	three_prime_UTR	26987284	26987418	.	+	.	Parent=Os07t0646400-01
Chr07	irgsp1_rep	three_prime_UTR	26987509	26988058	.	+	.	Parent=Os07t0646400-01
Chr07	irgsp1_rep	three_prime_UTR	26988138	26988206	.	+	.	Parent=Os07t0646400-01
Chr07	irgsp1_rep	three_prime_UTR	26988310	26988333	.	+	.	Parent=Os07t0646400-01
Chr07	irgsp1_rep	mRNA	26992364	26994742	.	+	.	ID=Os07t0646500-00;Name=Os07t0646500-00;Locus_id=Os07g0646500;Note=Zinc finger%2C SWIM-type domain containing protein.;Transcript_evidence=tplb0045a16 (Wheat FLcDNA);ORF_evidence=NP_001060463.1 (RefSeq);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);TENOR=Os07t0646500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	26992364	26994637	.	+	0	Parent=Os07t0646500-00
Chr07	irgsp1_rep	three_prime_UTR	26994638	26994742	.	+	.	Parent=Os07t0646500-00
Chr07	irgsp1_rep	mRNA	26995075	27000533	.	-	.	ID=Os07t0646600-01;Name=Os07t0646600-01;Locus_id=Os07g0646600;Oryzabase Gene Symbol Synonym(s)=qHMS7 ORF3;Oryzabase Gene Name Synonym(s)=QTL for hybrid male sterility on Chromosome 7 ORF3;Note=Conserved hypothetical protein.;Transcript_evidence=AK069929 (DDBJ%2C Best hit);ORF_evidence=A3BMT7 (UniProt);NIAS_FLcDNA=J023036O09;Oryzabase=22483;Expression=AK069929;TENOR=Os07t0646600-01;KEGG=Os07t0646600-01
Chr07	irgsp1_rep	five_prime_UTR	27000487	27000533	.	-	.	Parent=Os07t0646600-01
Chr07	irgsp1_rep	CDS	27000308	27000486	.	-	0	Parent=Os07t0646600-01
Chr07	irgsp1_rep	CDS	26999471	26999898	.	-	1	Parent=Os07t0646600-01
Chr07	irgsp1_rep	CDS	26998170	26998408	.	-	2	Parent=Os07t0646600-01
Chr07	irgsp1_rep	CDS	26995379	26995957	.	-	0	Parent=Os07t0646600-01
Chr07	irgsp1_rep	three_prime_UTR	26995075	26995378	.	-	.	Parent=Os07t0646600-01
Chr07	irgsp1_rep	mRNA	27002173	27004378	.	+	.	ID=Os07t0646700-00;Name=Os07t0646700-00;Locus_id=Os07g0646700;Note=Zinc finger%2C SWIM-type domain containing protein.;Transcript_evidence=tplb0045a16 (Wheat FLcDNA);ORF_evidence=B9FUI9 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);TENOR=Os07t0646700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	27002173	27004314	.	+	0	Parent=Os07t0646700-00
Chr07	irgsp1_rep	three_prime_UTR	27004315	27004378	.	+	.	Parent=Os07t0646700-00
Chr07	irgsp1_rep	mRNA	27006623	27008473	.	+	.	ID=Os07t0646800-01;Name=Os07t0646800-01;Locus_id=Os07g0646800;CGSNL Gene Symbol=GATL4;CGSNL Gene Name=GALACTURONOSYLTRANSFERASE-LIKE 4;Oryzabase Gene Symbol Synonym(s)=OsSTA200%2C OsGATL4;Oryzabase Gene Name Synonym(s)=galacturonosyltransferase-like 4;Note=Similar to Avr9/Cf-9 rapidly elicited protein 231.;Transcript_evidence=AK071716 (DDBJ%2C Best hit);ORF_evidence=XP_002311936.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 8 (IPR002495);NIAS_FLcDNA=J023110G08;Oryzabase=19477;Expression=AK071716;TENOR=Os07t0646800-01;KEGG=Os07t0646800-01
Chr07	irgsp1_rep	five_prime_UTR	27006623	27006772	.	+	.	Parent=Os07t0646800-01
Chr07	irgsp1_rep	CDS	27006773	27007906	.	+	0	Parent=Os07t0646800-01
Chr07	irgsp1_rep	three_prime_UTR	27007907	27008473	.	+	.	Parent=Os07t0646800-01
Chr07	irgsp1_rep	mRNA	27014194	27018827	.	+	.	ID=Os07t0647100-01;Name=Os07t0647100-01;Locus_id=Os07g0647100;Note=Mo25-like domain containing protein.;Transcript_evidence=AK065269 (DDBJ%2C Best hit);ORF_evidence=NP_001149546.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Mo25-like (IPR013878),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013002K24;Expression=AK065269;TENOR=Os07t0647100-01;KEGG=Os07t0647100-01
Chr07	irgsp1_rep	five_prime_UTR	27014194	27014455	.	+	.	Parent=Os07t0647100-01
Chr07	irgsp1_rep	CDS	27014456	27014566	.	+	0	Parent=Os07t0647100-01
Chr07	irgsp1_rep	CDS	27015490	27015654	.	+	0	Parent=Os07t0647100-01
Chr07	irgsp1_rep	CDS	27015733	27015851	.	+	0	Parent=Os07t0647100-01
Chr07	irgsp1_rep	CDS	27016139	27016213	.	+	1	Parent=Os07t0647100-01
Chr07	irgsp1_rep	CDS	27016643	27016736	.	+	1	Parent=Os07t0647100-01
Chr07	irgsp1_rep	CDS	27016819	27016878	.	+	0	Parent=Os07t0647100-01
Chr07	irgsp1_rep	CDS	27017054	27017119	.	+	0	Parent=Os07t0647100-01
Chr07	irgsp1_rep	CDS	27017202	27017300	.	+	0	Parent=Os07t0647100-01
Chr07	irgsp1_rep	CDS	27017872	27017916	.	+	0	Parent=Os07t0647100-01
Chr07	irgsp1_rep	CDS	27018353	27018455	.	+	0	Parent=Os07t0647100-01
Chr07	irgsp1_rep	CDS	27018613	27018689	.	+	2	Parent=Os07t0647100-01
Chr07	irgsp1_rep	three_prime_UTR	27018690	27018827	.	+	.	Parent=Os07t0647100-01
Chr07	irgsp1_rep	mRNA	27019245	27023518	.	-	.	ID=Os07t0647200-00;Name=Os07t0647200-00;Locus_id=Os07g0647200;CGSNL Gene Symbol=CYP734A5;CGSNL Gene Name=CYTOCHROME P450 HYDROXYLASE 734A5;Note=Similar to CytoChrome P450 CYP734A7.;Transcript_evidence=AB488668 (DDBJ%2C Best hit);ORF_evidence=B6U8A2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);Oryzabase=14297;TENOR=Os07t0647200-00;KEGG=Os07t0647200-00 (EC:1.14.14.1)
Chr07	irgsp1_rep	CDS	27023203	27023518	.	-	0	Parent=Os07t0647200-00
Chr07	irgsp1_rep	CDS	27020891	27021108	.	-	2	Parent=Os07t0647200-00
Chr07	irgsp1_rep	CDS	27020255	27020794	.	-	0	Parent=Os07t0647200-00
Chr07	irgsp1_rep	CDS	27019245	27019688	.	-	0	Parent=Os07t0647200-00
Chr07	irgsp1_rep	mRNA	27029418	27035264	.	-	.	ID=Os07t0647300-01;Name=Os07t0647300-01;Locus_id=Os07g0647300;Note=Conserved hypothetical protein.;Transcript_evidence=AK240709 (DDBJ%2C Best hit);ORF_evidence=B9FUJ1 (UniProt);NIAS_FLcDNA=J043021D21;TENOR=Os07t0647300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	27035094	27035264	.	-	.	Parent=Os07t0647300-01
Chr07	irgsp1_rep	CDS	27035008	27035093	.	-	0	Parent=Os07t0647300-01
Chr07	irgsp1_rep	CDS	27034860	27034921	.	-	1	Parent=Os07t0647300-01
Chr07	irgsp1_rep	CDS	27034712	27034785	.	-	2	Parent=Os07t0647300-01
Chr07	irgsp1_rep	CDS	27034444	27034620	.	-	0	Parent=Os07t0647300-01
Chr07	irgsp1_rep	three_prime_UTR	27033488	27034443	.	-	.	Parent=Os07t0647300-01
Chr07	irgsp1_rep	three_prime_UTR	27032785	27032877	.	-	.	Parent=Os07t0647300-01
Chr07	irgsp1_rep	three_prime_UTR	27031661	27031729	.	-	.	Parent=Os07t0647300-01
Chr07	irgsp1_rep	three_prime_UTR	27031472	27031573	.	-	.	Parent=Os07t0647300-01
Chr07	irgsp1_rep	three_prime_UTR	27031224	27031292	.	-	.	Parent=Os07t0647300-01
Chr07	irgsp1_rep	three_prime_UTR	27030525	27030581	.	-	.	Parent=Os07t0647300-01
Chr07	irgsp1_rep	three_prime_UTR	27029418	27029990	.	-	.	Parent=Os07t0647300-01
Chr07	irgsp1_rep	mRNA	27036995	27038656	.	+	.	ID=Os07t0647400-00;Name=Os07t0647400-00;Locus_id=Os07g0647400;Note=BSD domain containing protein.;Transcript_evidence=AK330651 (DDBJ);ORF_evidence=NP_001060469.1 (RefSeq);InterPro=BSD (IPR005607);TENOR=Os07t0647400-00;KEGG=Os07t0647400-00
Chr07	irgsp1_rep	CDS	27036995	27038377	.	+	0	Parent=Os07t0647400-00
Chr07	irgsp1_rep	three_prime_UTR	27038378	27038656	.	+	.	Parent=Os07t0647400-00
Chr07	irgsp1_rep	mRNA	27040011	27041822	.	+	.	ID=Os07t0647500-01;Name=Os07t0647500-01;Locus_id=Os07g0647500;Oryzabase Gene Name Synonym(s)=Par gene protein;Note=CytoChrome c oxidase%2C subunit VIIa domain containing protein.;Transcript_evidence=AK058954 (DDBJ%2C Best hit);ORF_evidence=B6T2C0 (UniProt);GO=Cellular Component: mitochondrial respiratory chain (GO:0005746),Molecular Function: cytoChrome-c oxidase activity (GO:0004129),Molecular Function: electron carrier activity (GO:0009055);InterPro=CytoChrome c oxidase%2C subunit VIIa (IPR003177);NIAS_FLcDNA=001-020-B01;Oryzabase=17645;Expression=AK058954;TENOR=Os07t0647500-01;KEGG=Os07t0647500-01
Chr07	irgsp1_rep	five_prime_UTR	27040011	27040101	.	+	.	Parent=Os07t0647500-01
Chr07	irgsp1_rep	five_prime_UTR	27041337	27041337	.	+	.	Parent=Os07t0647500-01
Chr07	irgsp1_rep	CDS	27041338	27041493	.	+	0	Parent=Os07t0647500-01
Chr07	irgsp1_rep	CDS	27041588	27041635	.	+	0	Parent=Os07t0647500-01
Chr07	irgsp1_rep	three_prime_UTR	27041636	27041822	.	+	.	Parent=Os07t0647500-01
Chr07	irgsp1_rep	mRNA	27041334	27041774	.	-	.	ID=Os07t0647550-00;Name=Os07t0647550-00;Locus_id=Os07g0647550;Note=Non-protein coding transcript.;Transcript_evidence=BT016940 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0647550-00
Chr07	irgsp1_rep	exon	27041588	27041774	.	-	.	Parent=Os07t0647550-00
Chr07	irgsp1_rep	exon	27041334	27041493	.	-	.	Parent=Os07t0647550-00
Chr07	irgsp1_rep	mRNA	27043501	27046097	.	-	.	ID=Os07t0647600-01;Name=Os07t0647600-01;Locus_id=Os07g0647600;Note=Myb/SANT-like domain domain containing protein.;Transcript_evidence=AK107302 (DDBJ%2C Best hit);ORF_evidence=B9FUJ3 (UniProt);InterPro=Myb/SANT-like domain (IPR024752);NIAS_FLcDNA=002-126-C10;Expression=AK107302;TENOR=Os07t0647600-01;KEGG=Os07t0647600-01
Chr07	irgsp1_rep	five_prime_UTR	27045992	27046097	.	-	.	Parent=Os07t0647600-01
Chr07	irgsp1_rep	five_prime_UTR	27045546	27045547	.	-	.	Parent=Os07t0647600-01
Chr07	irgsp1_rep	CDS	27045189	27045545	.	-	0	Parent=Os07t0647600-01
Chr07	irgsp1_rep	CDS	27045005	27045111	.	-	0	Parent=Os07t0647600-01
Chr07	irgsp1_rep	CDS	27044754	27044766	.	-	1	Parent=Os07t0647600-01
Chr07	irgsp1_rep	three_prime_UTR	27044313	27044753	.	-	.	Parent=Os07t0647600-01
Chr07	irgsp1_rep	three_prime_UTR	27043501	27043772	.	-	.	Parent=Os07t0647600-01
Chr07	irgsp1_rep	mRNA	27050796	27054786	.	-	.	ID=Os07t0647800-01;Name=Os07t0647800-01;Locus_id=Os07g0647800;Note=Similar to zinc finger family protein.;Transcript_evidence=AK102332 (DDBJ%2C Best hit);ORF_evidence=XP_002887932.1 (RefSeq);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=E3 Ubiquitin ligase (IPR022170);NIAS_FLcDNA=J033090N02;Expression=AK102332;TENOR=Os07t0647800-01;KEGG=Os07t0647800-01
Chr07	irgsp1_rep	five_prime_UTR	27054601	27054786	.	-	.	Parent=Os07t0647800-01
Chr07	irgsp1_rep	CDS	27054524	27054600	.	-	0	Parent=Os07t0647800-01
Chr07	irgsp1_rep	CDS	27054387	27054439	.	-	1	Parent=Os07t0647800-01
Chr07	irgsp1_rep	CDS	27053758	27053882	.	-	2	Parent=Os07t0647800-01
Chr07	irgsp1_rep	CDS	27053569	27053664	.	-	0	Parent=Os07t0647800-01
Chr07	irgsp1_rep	CDS	27052924	27053061	.	-	0	Parent=Os07t0647800-01
Chr07	irgsp1_rep	CDS	27052775	27052840	.	-	0	Parent=Os07t0647800-01
Chr07	irgsp1_rep	CDS	27052556	27052668	.	-	0	Parent=Os07t0647800-01
Chr07	irgsp1_rep	CDS	27052287	27052482	.	-	1	Parent=Os07t0647800-01
Chr07	irgsp1_rep	three_prime_UTR	27051925	27052286	.	-	.	Parent=Os07t0647800-01
Chr07	irgsp1_rep	three_prime_UTR	27051733	27051838	.	-	.	Parent=Os07t0647800-01
Chr07	irgsp1_rep	three_prime_UTR	27050796	27051393	.	-	.	Parent=Os07t0647800-01
Chr07	irgsp1_rep	mRNA	27050884	27052842	.	-	.	ID=Os07t0647800-02;Name=Os07t0647800-02;Locus_id=Os07g0647800;Note=Similar to zinc finger (C3HC4-type RING finger) family protein.;Transcript_evidence=AK111992 (DDBJ%2C Best hit);ORF_evidence=E4MXS5 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),E3 Ubiquitin ligase (IPR022170);NIAS_FLcDNA=001-033-B02;Expression=AK111992;TENOR=Os07t0647800-02;KEGG=Os07t0647800-02
Chr07	irgsp1_rep	five_prime_UTR	27052841	27052842	.	-	.	Parent=Os07t0647800-02
Chr07	irgsp1_rep	CDS	27052775	27052840	.	-	0	Parent=Os07t0647800-02
Chr07	irgsp1_rep	CDS	27052556	27052668	.	-	0	Parent=Os07t0647800-02
Chr07	irgsp1_rep	CDS	27052372	27052482	.	-	1	Parent=Os07t0647800-02
Chr07	irgsp1_rep	CDS	27051925	27051968	.	-	1	Parent=Os07t0647800-02
Chr07	irgsp1_rep	CDS	27051733	27051838	.	-	2	Parent=Os07t0647800-02
Chr07	irgsp1_rep	CDS	27051291	27051393	.	-	1	Parent=Os07t0647800-02
Chr07	irgsp1_rep	three_prime_UTR	27050884	27051290	.	-	.	Parent=Os07t0647800-02
Chr07	irgsp1_rep	mRNA	27055343	27059048	.	+	.	ID=Os07t0647900-01;Name=Os07t0647900-01;Locus_id=Os07g0647900;Oryzabase Gene Symbol Synonym(s)=OsRH57;Oryzabase Gene Name Synonym(s)=RNA helicase 57;Note=DEAD-like helicase%2C N-terminal domain containing protein.;Transcript_evidence=AK063527 (DDBJ%2C Best hit);ORF_evidence=Q84TG1 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=001-117-A08;Oryzabase=19162;Expression=AK063527;TENOR=Os07t0647900-01;KEGG=Os07t0647900-01
Chr07	irgsp1_rep	five_prime_UTR	27055343	27055421	.	+	.	Parent=Os07t0647900-01
Chr07	irgsp1_rep	CDS	27055422	27055638	.	+	0	Parent=Os07t0647900-01
Chr07	irgsp1_rep	CDS	27055724	27055863	.	+	2	Parent=Os07t0647900-01
Chr07	irgsp1_rep	CDS	27056038	27056129	.	+	0	Parent=Os07t0647900-01
Chr07	irgsp1_rep	CDS	27056260	27056356	.	+	1	Parent=Os07t0647900-01
Chr07	irgsp1_rep	CDS	27056451	27056531	.	+	0	Parent=Os07t0647900-01
Chr07	irgsp1_rep	CDS	27056611	27056843	.	+	0	Parent=Os07t0647900-01
Chr07	irgsp1_rep	CDS	27057456	27057650	.	+	1	Parent=Os07t0647900-01
Chr07	irgsp1_rep	CDS	27057729	27057819	.	+	1	Parent=Os07t0647900-01
Chr07	irgsp1_rep	CDS	27057904	27058026	.	+	0	Parent=Os07t0647900-01
Chr07	irgsp1_rep	CDS	27058122	27058272	.	+	0	Parent=Os07t0647900-01
Chr07	irgsp1_rep	CDS	27058640	27058842	.	+	2	Parent=Os07t0647900-01
Chr07	irgsp1_rep	three_prime_UTR	27058843	27059048	.	+	.	Parent=Os07t0647900-01
Chr07	irgsp1_rep	mRNA	27058971	27062284	.	-	.	ID=Os07t0648000-01;Name=Os07t0648000-01;Locus_id=Os07g0648000;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK111216 (DDBJ%2C Best hit);ORF_evidence=A3BMV3 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=002-179-B05;Expression=AK111216;TENOR=Os07t0648000-01;KEGG=Os07t0648000-01
Chr07	irgsp1_rep	five_prime_UTR	27062241	27062284	.	-	.	Parent=Os07t0648000-01
Chr07	irgsp1_rep	CDS	27060237	27062240	.	-	0	Parent=Os07t0648000-01
Chr07	irgsp1_rep	CDS	27059122	27059556	.	-	0	Parent=Os07t0648000-01
Chr07	irgsp1_rep	three_prime_UTR	27058971	27059121	.	-	.	Parent=Os07t0648000-01
Chr07	irgsp1_rep	mRNA	27062738	27069070	.	-	.	ID=Os07t0648100-01;Name=Os07t0648100-01;Locus_id=Os07g0648100;Note=Non-protein coding transcript.;Transcript_evidence=AK106019 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-206-B11;TENOR=Os07t0648100-01
Chr07	irgsp1_rep	exon	27069016	27069070	.	-	.	Parent=Os07t0648100-01
Chr07	irgsp1_rep	exon	27063478	27064082	.	-	.	Parent=Os07t0648100-01
Chr07	irgsp1_rep	exon	27062738	27063302	.	-	.	Parent=Os07t0648100-01
Chr07	irgsp1_rep	mRNA	27065563	27067402	.	+	.	ID=Os07t0648233-00;Name=Os07t0648233-00;Locus_id=Os07g0648233;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=AK360226 (DDBJ);ORF_evidence=B9FUJ6 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-type fold (IPR016024);TENOR=Os07t0648233-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	27065563	27066555	.	+	0	Parent=Os07t0648233-00
Chr07	irgsp1_rep	CDS	27066968	27067402	.	+	0	Parent=Os07t0648233-00
Chr07	irgsp1_rep	mRNA	27073219	27078777	.	+	.	ID=Os07t0648266-00;Name=Os07t0648266-00;Locus_id=Os07g0648266;Oryzabase Gene Symbol Synonym(s)=OsMed12_1%2C Med12_1;Oryzabase Gene Name Synonym(s)=Mediator 12_1;Note=Similar to 2-oxo acid dehydrogenase%2C lipoyl-binding site.;Transcript_evidence=BT061076 (DDBJ);ORF_evidence=Q2HTJ2 (UniProt);GO=Biological Process: regulation of transcription from RNA polymerase II promoter (GO:0006357),Cellular Component: mediator complex (GO:0016592),Molecular Function: RNA polymerase II transcription cofactor activity (GO:0001104);InterPro=Mediator complex%2C subunit Med12 (IPR019035);Oryzabase=20973;TENOR=Os07t0648266-00;KEGG=Os07t0648266-00
Chr07	irgsp1_rep	CDS	27073219	27073307	.	+	0	Parent=Os07t0648266-00
Chr07	irgsp1_rep	CDS	27073576	27073681	.	+	1	Parent=Os07t0648266-00
Chr07	irgsp1_rep	CDS	27073834	27073905	.	+	0	Parent=Os07t0648266-00
Chr07	irgsp1_rep	CDS	27074588	27074641	.	+	0	Parent=Os07t0648266-00
Chr07	irgsp1_rep	CDS	27074727	27074834	.	+	0	Parent=Os07t0648266-00
Chr07	irgsp1_rep	CDS	27075287	27075436	.	+	0	Parent=Os07t0648266-00
Chr07	irgsp1_rep	CDS	27075786	27076127	.	+	0	Parent=Os07t0648266-00
Chr07	irgsp1_rep	CDS	27076231	27078777	.	+	0	Parent=Os07t0648266-00
Chr07	irgsp1_rep	mRNA	27081022	27083477	.	+	.	ID=Os07t0648300-01;Name=Os07t0648300-01;Locus_id=Os07g0648300;Oryzabase Gene Symbol Synonym(s)=OsMed12_1%2C Med12_1;Oryzabase Gene Name Synonym(s)=Mediator 12_1;Note=Conserved hypothetical protein.;Transcript_evidence=AK061964 (DDBJ%2C Best hit);ORF_evidence=B9FUJ7 (UniProt);NIAS_FLcDNA=001-042-G09;Oryzabase=20973;TENOR=Os07t0648300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	27081022	27081023	.	+	.	Parent=Os07t0648300-01
Chr07	irgsp1_rep	CDS	27081024	27081763	.	+	0	Parent=Os07t0648300-01
Chr07	irgsp1_rep	CDS	27082113	27082431	.	+	1	Parent=Os07t0648300-01
Chr07	irgsp1_rep	CDS	27082560	27082997	.	+	0	Parent=Os07t0648300-01
Chr07	irgsp1_rep	three_prime_UTR	27082998	27083477	.	+	.	Parent=Os07t0648300-01
Chr07	irgsp1_rep	mRNA	27084840	27094263	.	+	.	ID=Os07t0648400-00;Name=Os07t0648400-00;Locus_id=Os07g0648400;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=tplb0004l24 (Wheat FLcDNA);ORF_evidence=Q7XIC5 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-type fold (IPR016024);TENOR=Os07t0648400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	27084840	27085114	.	+	0	Parent=Os07t0648400-00
Chr07	irgsp1_rep	CDS	27086553	27088318	.	+	1	Parent=Os07t0648400-00
Chr07	irgsp1_rep	CDS	27093387	27093511	.	+	2	Parent=Os07t0648400-00
Chr07	irgsp1_rep	three_prime_UTR	27093512	27093659	.	+	.	Parent=Os07t0648400-00
Chr07	irgsp1_rep	three_prime_UTR	27093793	27094263	.	+	.	Parent=Os07t0648400-00
Chr07	irgsp1_rep	mRNA	27105159	27105857	.	+	.	ID=Os07t0648566-01;Name=Os07t0648566-01;Locus_id=Os07g0648566;Note=Hypothetical gene.;Transcript_evidence=AK059417 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-027-D07;Expression=AK059417;TENOR=Os07t0648566-01;KEGG=Os07t0648566-01
Chr07	irgsp1_rep	five_prime_UTR	27105159	27105159	.	+	.	Parent=Os07t0648566-01
Chr07	irgsp1_rep	CDS	27105160	27105555	.	+	0	Parent=Os07t0648566-01
Chr07	irgsp1_rep	three_prime_UTR	27105556	27105857	.	+	.	Parent=Os07t0648566-01
Chr07	irgsp1_rep	mRNA	27105183	27105596	.	-	.	ID=Os07t0648700-00;Name=Os07t0648700-00;Locus_id=Os07g0648700;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001175315.1 (RefSeq);TENOR=Os07t0648700-00;KEGG=Os07t0648700-00
Chr07	irgsp1_rep	CDS	27105183	27105596	.	-	0	Parent=Os07t0648700-00
Chr07	irgsp1_rep	mRNA	27117447	27124908	.	+	.	ID=Os07t0648900-00;Name=Os07t0648900-00;Locus_id=Os07g0648900;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=tplb0004l24 (Wheat FLcDNA);ORF_evidence=Q7XIC3 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);TENOR=Os07t0648900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	27117447	27117697	.	+	0	Parent=Os07t0648900-00
Chr07	irgsp1_rep	CDS	27121669	27123811	.	+	1	Parent=Os07t0648900-00
Chr07	irgsp1_rep	CDS	27124390	27124845	.	+	0	Parent=Os07t0648900-00
Chr07	irgsp1_rep	three_prime_UTR	27124846	27124908	.	+	.	Parent=Os07t0648900-00
Chr07	irgsp1_rep	mRNA	27132411	27137858	.	+	.	ID=Os07t0649100-00;Name=Os07t0649100-00;Locus_id=Os07g0649100;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=tplb0004l24 (Wheat FLcDNA);ORF_evidence=Q7XIC1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);TENOR=Os07t0649100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	27132411	27132670	.	+	0	Parent=Os07t0649100-00
Chr07	irgsp1_rep	CDS	27134774	27136967	.	+	1	Parent=Os07t0649100-00
Chr07	irgsp1_rep	CDS	27137401	27137847	.	+	0	Parent=Os07t0649100-00
Chr07	irgsp1_rep	three_prime_UTR	27137848	27137858	.	+	.	Parent=Os07t0649100-00
Chr07	irgsp1_rep	mRNA	27140810	27145797	.	-	.	ID=Os07t0649200-01;Name=Os07t0649200-01;Locus_id=Os07g0649200;Note=Hypothetical protein.;Transcript_evidence=AK072510 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023130E20;Expression=AK072510;TENOR=Os07t0649200-01;KEGG=Os07t0649200-01
Chr07	irgsp1_rep	five_prime_UTR	27145680	27145797	.	-	.	Parent=Os07t0649200-01
Chr07	irgsp1_rep	five_prime_UTR	27145507	27145522	.	-	.	Parent=Os07t0649200-01
Chr07	irgsp1_rep	CDS	27145252	27145506	.	-	0	Parent=Os07t0649200-01
Chr07	irgsp1_rep	three_prime_UTR	27143876	27145251	.	-	.	Parent=Os07t0649200-01
Chr07	irgsp1_rep	three_prime_UTR	27143428	27143680	.	-	.	Parent=Os07t0649200-01
Chr07	irgsp1_rep	three_prime_UTR	27143192	27143358	.	-	.	Parent=Os07t0649200-01
Chr07	irgsp1_rep	three_prime_UTR	27140810	27141524	.	-	.	Parent=Os07t0649200-01
Chr07	irgsp1_rep	mRNA	27141246	27145190	.	+	.	ID=Os07t0649300-00;Name=Os07t0649300-00;Locus_id=Os07g0649300;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001060477.2 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);TENOR=Os07t0649300-00
Chr07	irgsp1_rep	CDS	27141246	27141520	.	+	0	Parent=Os07t0649300-00
Chr07	irgsp1_rep	CDS	27142112	27144311	.	+	1	Parent=Os07t0649300-00
Chr07	irgsp1_rep	CDS	27144741	27145190	.	+	0	Parent=Os07t0649300-00
Chr07	irgsp1_rep	mRNA	27149011	27150019	.	+	.	ID=Os07t0649400-01;Name=Os07t0649400-01;Locus_id=Os07g0649400;Note=Conserved hypothetical protein.;Transcript_evidence=AK063018 (DDBJ%2C Best hit);ORF_evidence=NP_001055541.1 (RefSeq);NIAS_FLcDNA=001-110-A12;TENOR=Os07t0649400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	27149011	27149545	.	+	.	Parent=Os07t0649400-01
Chr07	irgsp1_rep	CDS	27149546	27149671	.	+	0	Parent=Os07t0649400-01
Chr07	irgsp1_rep	three_prime_UTR	27149672	27150019	.	+	.	Parent=Os07t0649400-01
Chr07	irgsp1_rep	mRNA	27150266	27154326	.	+	.	ID=Os07t0649500-00;Name=Os07t0649500-00;Locus_id=Os07g0649500;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=tplb0004l24 (Wheat FLcDNA);ORF_evidence=NP_001060480.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);TENOR=Os07t0649500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	27150266	27150549	.	+	0	Parent=Os07t0649500-00
Chr07	irgsp1_rep	CDS	27151276	27153454	.	+	1	Parent=Os07t0649500-00
Chr07	irgsp1_rep	CDS	27153885	27154316	.	+	0	Parent=Os07t0649500-00
Chr07	irgsp1_rep	three_prime_UTR	27154317	27154326	.	+	.	Parent=Os07t0649500-00
Chr07	irgsp1_rep	mRNA	27155068	27157912	.	-	.	ID=Os07t0649600-00;Name=Os07t0649600-00;Locus_id=Os07g0649600;Note=Similar to OSIGBa0093K19.10 protein.;Transcript_evidence=tplb0024k15 (Wheat FLcDNA);ORF_evidence=Q01K98 (UniProt);TENOR=Os07t0649600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	27157747	27157912	.	-	.	Parent=Os07t0649600-00
Chr07	irgsp1_rep	CDS	27157668	27157746	.	-	0	Parent=Os07t0649600-00
Chr07	irgsp1_rep	CDS	27156408	27156644	.	-	2	Parent=Os07t0649600-00
Chr07	irgsp1_rep	CDS	27155068	27155615	.	-	2	Parent=Os07t0649600-00
Chr07	irgsp1_rep	mRNA	27165867	27166599	.	+	.	ID=Os07t0649800-00;Name=Os07t0649800-00;Locus_id=Os07g0649800;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A3BMW5 (UniProt);TENOR=Os07t0649800-00;KEGG=Os07t0649800-00
Chr07	irgsp1_rep	CDS	27165867	27165935	.	+	0	Parent=Os07t0649800-00
Chr07	irgsp1_rep	CDS	27166153	27166599	.	+	0	Parent=Os07t0649800-00
Chr07	irgsp1_rep	mRNA	27171289	27176212	.	-	.	ID=Os07t0650000-01;Name=Os07t0650000-01;Locus_id=Os07g0650000;Note=Hypothetical protein.;Transcript_evidence=AK102825 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033108P21;Expression=AK102825;TENOR=Os07t0650000-01;KEGG=Os07t0650000-01
Chr07	irgsp1_rep	five_prime_UTR	27176110	27176212	.	-	.	Parent=Os07t0650000-01
Chr07	irgsp1_rep	five_prime_UTR	27173086	27174794	.	-	.	Parent=Os07t0650000-01
Chr07	irgsp1_rep	CDS	27172723	27173085	.	-	0	Parent=Os07t0650000-01
Chr07	irgsp1_rep	three_prime_UTR	27172565	27172722	.	-	.	Parent=Os07t0650000-01
Chr07	irgsp1_rep	three_prime_UTR	27172094	27172478	.	-	.	Parent=Os07t0650000-01
Chr07	irgsp1_rep	three_prime_UTR	27171289	27171541	.	-	.	Parent=Os07t0650000-01
Chr07	irgsp1_rep	mRNA	27172211	27175529	.	+	.	ID=Os07t0650100-00;Name=Os07t0650100-00;Locus_id=Os07g0650100;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK360226 (DDBJ);ORF_evidence=A3BMW6 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);TENOR=Os07t0650100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	27172211	27174775	.	+	0	Parent=Os07t0650100-00
Chr07	irgsp1_rep	CDS	27175101	27175529	.	+	0	Parent=Os07t0650100-00
Chr07	irgsp1_rep	mRNA	27181556	27183933	.	+	.	ID=Os07t0650200-00;Name=Os07t0650200-00;Locus_id=Os07g0650200;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK360226 (DDBJ);ORF_evidence=B9FUK5 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);TENOR=Os07t0650200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	27181556	27183310	.	+	0	Parent=Os07t0650200-00
Chr07	irgsp1_rep	CDS	27183505	27183933	.	+	0	Parent=Os07t0650200-00
Chr07	irgsp1_rep	mRNA	27181754	27184662	.	-	.	ID=Os07t0650300-01;Name=Os07t0650300-01;Locus_id=Os07g0650300;Note=Hypothetical protein.;Transcript_evidence=AK106984 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-119-H11;Expression=AK106984;TENOR=Os07t0650300-01;KEGG=Os07t0650300-01
Chr07	irgsp1_rep	five_prime_UTR	27184506	27184662	.	-	.	Parent=Os07t0650300-01
Chr07	irgsp1_rep	five_prime_UTR	27183016	27183317	.	-	.	Parent=Os07t0650300-01
Chr07	irgsp1_rep	CDS	27182548	27183015	.	-	0	Parent=Os07t0650300-01
Chr07	irgsp1_rep	three_prime_UTR	27181754	27182547	.	-	.	Parent=Os07t0650300-01
Chr07	irgsp1_rep	mRNA	27185312	27189685	.	+	.	ID=Os07t0650375-00;Name=Os07t0650375-00;Locus_id=Os07g0650375;Note=Armadillo domain containing protein.;Transcript_evidence=tplb0004l24 (Wheat FLcDNA);ORF_evidence=Q7XIB6 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),Armadillo-type fold (IPR016024);TENOR=Os07t0650375-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	27185312	27185565	.	+	0	Parent=Os07t0650375-00
Chr07	irgsp1_rep	CDS	27186746	27188714	.	+	1	Parent=Os07t0650375-00
Chr07	irgsp1_rep	three_prime_UTR	27188715	27189007	.	+	.	Parent=Os07t0650375-00
Chr07	irgsp1_rep	three_prime_UTR	27189238	27189685	.	+	.	Parent=Os07t0650375-00
Chr07	irgsp1_rep	mRNA	27185941	27190989	.	-	.	ID=Os07t0650451-00;Name=Os07t0650451-00;Locus_id=Os07g0650451;Note=Hypothetical gene.;Transcript_evidence=AK121558 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;TENOR=Os07t0650451-00;KEGG=Os07t0650451-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	27190922	27190989	.	-	.	Parent=Os07t0650451-00
Chr07	irgsp1_rep	five_prime_UTR	27189489	27189657	.	-	.	Parent=Os07t0650451-00
Chr07	irgsp1_rep	five_prime_UTR	27188249	27188809	.	-	.	Parent=Os07t0650451-00
Chr07	irgsp1_rep	CDS	27187796	27188248	.	-	0	Parent=Os07t0650451-00
Chr07	irgsp1_rep	three_prime_UTR	27185941	27187795	.	-	.	Parent=Os07t0650451-00
Chr07	irgsp1_rep	mRNA	27197730	27200401	.	+	.	ID=Os07t0650600-02;Name=Os07t0650600-02;Locus_id=Os07g0650600;CGSNL Gene Symbol=BLE2;CGSNL Gene Name=BRASSINOLIDE ENHANCED GENE 2;Oryzabase Gene Symbol Synonym(s)=OsBLE2;Oryzabase Gene Name Synonym(s)=brassinolide (BL)-enhanced gene 2%2C BLE2 protein;Note=Similar to BLE2 protein.;Transcript_evidence=AK067435 (DDBJ%2C Best hit);ORF_evidence=Q8S936 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013104L16;Oryzabase=6091;TENOR=Os07t0650600-02
Chr07	irgsp1_rep	five_prime_UTR	27197730	27197777	.	+	.	Parent=Os07t0650600-02
Chr07	irgsp1_rep	CDS	27197778	27198058	.	+	0	Parent=Os07t0650600-02
Chr07	irgsp1_rep	CDS	27198369	27200401	.	+	1	Parent=Os07t0650600-02
Chr07	irgsp1_rep	mRNA	27200851	27201373	.	+	.	ID=Os07t0650600-03;Name=Os07t0650600-03;Locus_id=Os07g0650600;CGSNL Gene Symbol=BLE2;CGSNL Gene Name=BRASSINOLIDE ENHANCED GENE 2;Oryzabase Gene Symbol Synonym(s)=OsBLE2;Oryzabase Gene Name Synonym(s)=brassinolide (BL)-enhanced gene 2%2C BLE2 protein;Note=Hypothetical conserved gene.;Transcript_evidence=AK062101 (DDBJ%2C Best hit);ORF_evidence=A3BMW8 (UniProt);NIAS_FLcDNA=001-045-A08;Oryzabase=6091;Expression=AK062101;TENOR=Os07t0650600-03;KEGG=Os07t0650600-03
Chr07	irgsp1_rep	five_prime_UTR	27200851	27200852	.	+	.	Parent=Os07t0650600-03
Chr07	irgsp1_rep	CDS	27200853	27201167	.	+	0	Parent=Os07t0650600-03
Chr07	irgsp1_rep	three_prime_UTR	27201168	27201373	.	+	.	Parent=Os07t0650600-03
Chr07	irgsp1_rep	mRNA	27197715	27201395	.	+	.	ID=Os07t0650600-04;Name=Os07t0650600-04;Locus_id=Os07g0650600;CGSNL Gene Symbol=BLE2;CGSNL Gene Name=BRASSINOLIDE ENHANCED GENE 2;Oryzabase Gene Symbol Synonym(s)=OsBLE2;Oryzabase Gene Name Synonym(s)=brassinolide (BL)-enhanced gene 2%2C BLE2 protein;Note=BLE2 protein.;Transcript_evidence=AK067278 (DDBJ%2C Best hit),AK098888 (DDBJ%2C Best hit);ORF_evidence=Q8S936 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013098H22,J013001L03;Oryzabase=6091;TENOR=Os07t0650600-04
Chr07	irgsp1_rep	five_prime_UTR	27197715	27197777	.	+	.	Parent=Os07t0650600-04
Chr07	irgsp1_rep	CDS	27197778	27198058	.	+	0	Parent=Os07t0650600-04
Chr07	irgsp1_rep	CDS	27198369	27200508	.	+	1	Parent=Os07t0650600-04
Chr07	irgsp1_rep	CDS	27200721	27201167	.	+	0	Parent=Os07t0650600-04
Chr07	irgsp1_rep	three_prime_UTR	27201168	27201395	.	+	.	Parent=Os07t0650600-04
Chr07	irgsp1_rep	mRNA	27307929	27309527	.	+	.	ID=Os07t0651400-00;Name=Os07t0651400-00;Locus_id=Os07g0651400;Note=Similar to H0805A05.2 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01IG4 (UniProt);TENOR=Os07t0651400-00;KEGG=Os07t0651400-00
Chr07	irgsp1_rep	CDS	27307929	27308250	.	+	0	Parent=Os07t0651400-00
Chr07	irgsp1_rep	CDS	27308781	27308838	.	+	2	Parent=Os07t0651400-00
Chr07	irgsp1_rep	CDS	27309392	27309527	.	+	1	Parent=Os07t0651400-00
Chr07	irgsp1_rep	mRNA	27319435	27320868	.	+	.	ID=Os07t0651600-00;Name=Os07t0651600-00;Locus_id=Os07g0651600;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK360226 (DDBJ);ORF_evidence=B8B5C6 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);TENOR=Os07t0651600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	27319435	27320220	.	+	0	Parent=Os07t0651600-00
Chr07	irgsp1_rep	CDS	27320422	27320868	.	+	0	Parent=Os07t0651600-00
Chr07	irgsp1_rep	mRNA	27332178	27333500	.	+	.	ID=Os07t0651800-00;Name=Os07t0651800-00;Locus_id=Os07g0651800;Note=Armadillo domain containing protein.;Transcript_evidence=AK360226 (DDBJ);ORF_evidence=B9GAU0 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);TENOR=Os07t0651800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	27332178	27332369	.	+	.	Parent=Os07t0651800-00
Chr07	irgsp1_rep	CDS	27332370	27332873	.	+	0	Parent=Os07t0651800-00
Chr07	irgsp1_rep	CDS	27333084	27333500	.	+	0	Parent=Os07t0651800-00
Chr07	irgsp1_rep	mRNA	27234535	27234941	.	+	.	ID=Os07t0652900-00;Name=Os07t0652900-00;Locus_id=Os07g0652900;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os07t0652900-00;KEGG=Os07t0652900-00
Chr07	irgsp1_rep	CDS	27234535	27234599	.	+	0	Parent=Os07t0652900-00
Chr07	irgsp1_rep	CDS	27234722	27234941	.	+	1	Parent=Os07t0652900-00
Chr07	irgsp1_rep	mRNA	27421098	27422228	.	+	.	ID=Os07t0653000-00;Name=Os07t0653000-00;Locus_id=Os07g0653000;Note=Similar to BLE2 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8S936 (UniProt);TENOR=Os07t0653000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	27421098	27422228	.	+	0	Parent=Os07t0653000-00
Chr07	irgsp1_rep	mRNA	27422304	27423642	.	+	.	ID=Os07t0653050-00;Name=Os07t0653050-00;Locus_id=Os07g0653050;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FUK6 (UniProt);TENOR=Os07t0653050-00
Chr07	irgsp1_rep	CDS	27422304	27422523	.	+	0	Parent=Os07t0653050-00
Chr07	irgsp1_rep	CDS	27422577	27422677	.	+	2	Parent=Os07t0653050-00
Chr07	irgsp1_rep	CDS	27422922	27422981	.	+	0	Parent=Os07t0653050-00
Chr07	irgsp1_rep	CDS	27423196	27423642	.	+	0	Parent=Os07t0653050-00
Chr07	irgsp1_rep	mRNA	27424388	27426124	.	-	.	ID=Os07t0653100-01;Name=Os07t0653100-01;Locus_id=Os07g0653100;Note=Conserved hypothetical protein.;Transcript_evidence=AK241623 (DDBJ%2C Best hit);ORF_evidence=NP_001175319.1 (RefSeq);NIAS_FLcDNA=J065186P07;TENOR=Os07t0653100-01;KEGG=Os07t0653100-01
Chr07	irgsp1_rep	five_prime_UTR	27426072	27426124	.	-	.	Parent=Os07t0653100-01
Chr07	irgsp1_rep	CDS	27425989	27426071	.	-	0	Parent=Os07t0653100-01
Chr07	irgsp1_rep	CDS	27425686	27425818	.	-	1	Parent=Os07t0653100-01
Chr07	irgsp1_rep	three_prime_UTR	27424388	27425685	.	-	.	Parent=Os07t0653100-01
Chr07	irgsp1_rep	mRNA	27436796	27439326	.	-	.	ID=Os07t0653300-01;Name=Os07t0653300-01;Locus_id=Os07g0653300;Note=Hypothetical gene.;Transcript_evidence=AK063526 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-117-A05;Expression=AK063526;TENOR=Os07t0653300-01;KEGG=Os07t0653300-01
Chr07	irgsp1_rep	five_prime_UTR	27439326	27439326	.	-	.	Parent=Os07t0653300-01
Chr07	irgsp1_rep	CDS	27439174	27439325	.	-	0	Parent=Os07t0653300-01
Chr07	irgsp1_rep	CDS	27438929	27439032	.	-	1	Parent=Os07t0653300-01
Chr07	irgsp1_rep	CDS	27438727	27438743	.	-	2	Parent=Os07t0653300-01
Chr07	irgsp1_rep	three_prime_UTR	27438575	27438726	.	-	.	Parent=Os07t0653300-01
Chr07	irgsp1_rep	three_prime_UTR	27436796	27438487	.	-	.	Parent=Os07t0653300-01
Chr07	irgsp1_rep	mRNA	27467960	27472904	.	-	.	ID=Os07t0653800-01;Name=Os07t0653800-01;Locus_id=Os07g0653800;Note=Hypothetical protein.;Transcript_evidence=AK060607 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-025-C04;Expression=AK060607;TENOR=Os07t0653800-01;KEGG=Os07t0653800-01
Chr07	irgsp1_rep	five_prime_UTR	27472768	27472904	.	-	.	Parent=Os07t0653800-01
Chr07	irgsp1_rep	five_prime_UTR	27472034	27472131	.	-	.	Parent=Os07t0653800-01
Chr07	irgsp1_rep	five_prime_UTR	27469314	27471448	.	-	.	Parent=Os07t0653800-01
Chr07	irgsp1_rep	CDS	27469219	27469313	.	-	0	Parent=Os07t0653800-01
Chr07	irgsp1_rep	CDS	27468803	27469073	.	-	1	Parent=Os07t0653800-01
Chr07	irgsp1_rep	three_prime_UTR	27468701	27468802	.	-	.	Parent=Os07t0653800-01
Chr07	irgsp1_rep	three_prime_UTR	27467960	27468214	.	-	.	Parent=Os07t0653800-01
Chr07	irgsp1_rep	mRNA	27468808	27472349	.	+	.	ID=Os07t0653900-01;Name=Os07t0653900-01;Locus_id=Os07g0653900;Note=Hypothetical conserved gene.;Transcript_evidence=AK240723 (DDBJ%2C Best hit);ORF_evidence=B9FUL5 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J043027I23;TENOR=Os07t0653900-01;KEGG=Os07t0653900-01
Chr07	irgsp1_rep	five_prime_UTR	27468808	27468845	.	+	.	Parent=Os07t0653900-01
Chr07	irgsp1_rep	CDS	27468846	27469087	.	+	0	Parent=Os07t0653900-01
Chr07	irgsp1_rep	CDS	27469188	27471429	.	+	1	Parent=Os07t0653900-01
Chr07	irgsp1_rep	CDS	27471741	27472169	.	+	0	Parent=Os07t0653900-01
Chr07	irgsp1_rep	three_prime_UTR	27472170	27472349	.	+	.	Parent=Os07t0653900-01
Chr07	irgsp1_rep	mRNA	27474830	27479841	.	-	.	ID=Os07t0654100-01;Name=Os07t0654100-01;Locus_id=Os07g0654100;Note=Hypothetical protein.;Transcript_evidence=AK121558 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033033N04;Expression=AK121558;TENOR=Os07t0654100-01;KEGG=Os07t0654100-01
Chr07	irgsp1_rep	five_prime_UTR	27479681	27479841	.	-	.	Parent=Os07t0654100-01
Chr07	irgsp1_rep	five_prime_UTR	27478371	27478539	.	-	.	Parent=Os07t0654100-01
Chr07	irgsp1_rep	five_prime_UTR	27477153	27477690	.	-	.	Parent=Os07t0654100-01
Chr07	irgsp1_rep	CDS	27476823	27477152	.	-	0	Parent=Os07t0654100-01
Chr07	irgsp1_rep	three_prime_UTR	27474830	27476822	.	-	.	Parent=Os07t0654100-01
Chr07	irgsp1_rep	mRNA	27486411	27487921	.	-	.	ID=Os07t0654300-01;Name=Os07t0654300-01;Locus_id=Os07g0654300;Note=Conserved hypothetical protein.;Transcript_evidence=AK121908 (DDBJ%2C Best hit);ORF_evidence=Q6YU37 (UniProt);NIAS_FLcDNA=J033105O06;Expression=AK121908;TENOR=Os07t0654300-01;KEGG=Os07t0654300-01
Chr07	irgsp1_rep	five_prime_UTR	27487209	27487921	.	-	.	Parent=Os07t0654300-01
Chr07	irgsp1_rep	CDS	27486903	27487208	.	-	0	Parent=Os07t0654300-01
Chr07	irgsp1_rep	three_prime_UTR	27486411	27486902	.	-	.	Parent=Os07t0654300-01
Chr07	irgsp1_rep	mRNA	27490581	27491105	.	+	.	ID=Os07t0654450-00;Name=Os07t0654450-00;Locus_id=Os07g0654450;Note=Hypothetical conserved gene.;Transcript_evidence=AK062101 (DDBJ%2C Secondary hit);ORF_evidence=Q8H3E9 (UniProt);Expression=AK062101;TENOR=Os07t0654450-00;KEGG=Os07t0654450-00
Chr07	irgsp1_rep	five_prime_UTR	27490581	27490582	.	+	.	Parent=Os07t0654450-00
Chr07	irgsp1_rep	CDS	27490583	27490897	.	+	0	Parent=Os07t0654450-00
Chr07	irgsp1_rep	three_prime_UTR	27490898	27491105	.	+	.	Parent=Os07t0654450-00
Chr07	irgsp1_rep	mRNA	27488414	27491916	.	-	.	ID=Os07t0654500-01;Name=Os07t0654500-01;Locus_id=Os07g0654500;Note=Hypothetical protein.;Transcript_evidence=AK122088 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033123J12;TENOR=Os07t0654500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	27491762	27491916	.	-	.	Parent=Os07t0654500-01
Chr07	irgsp1_rep	five_prime_UTR	27490821	27490893	.	-	.	Parent=Os07t0654500-01
Chr07	irgsp1_rep	five_prime_UTR	27489603	27490004	.	-	.	Parent=Os07t0654500-01
Chr07	irgsp1_rep	five_prime_UTR	27488666	27489522	.	-	.	Parent=Os07t0654500-01
Chr07	irgsp1_rep	CDS	27488414	27488665	.	-	0	Parent=Os07t0654500-01
Chr07	irgsp1_rep	mRNA	27501837	27507177	.	+	.	ID=Os07t0654700-00;Name=Os07t0654700-00;Locus_id=Os07g0654700;Note=Similar to BLE2 protein.;Transcript_evidence=tplb0004l24 (Wheat FLcDNA);ORF_evidence=Q8S936 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);TENOR=Os07t0654700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	27501837	27502162	.	+	0	Parent=Os07t0654700-00
Chr07	irgsp1_rep	CDS	27504321	27506499	.	+	1	Parent=Os07t0654700-00
Chr07	irgsp1_rep	CDS	27506709	27507155	.	+	0	Parent=Os07t0654700-00
Chr07	irgsp1_rep	three_prime_UTR	27507156	27507177	.	+	.	Parent=Os07t0654700-00
Chr07	irgsp1_rep	mRNA	27504846	27508206	.	-	.	ID=Os07t0654800-01;Name=Os07t0654800-01;Locus_id=Os07g0654800;Note=Hypothetical gene.;Transcript_evidence=AK073136 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033023L17;Expression=AK073136;TENOR=Os07t0654800-01;KEGG=Os07t0654800-01
Chr07	irgsp1_rep	CDS	27508022	27508206	.	-	0	Parent=Os07t0654800-01
Chr07	irgsp1_rep	CDS	27506208	27506301	.	-	1	Parent=Os07t0654800-01
Chr07	irgsp1_rep	CDS	27505981	27506034	.	-	0	Parent=Os07t0654800-01
Chr07	irgsp1_rep	three_prime_UTR	27505897	27505980	.	-	.	Parent=Os07t0654800-01
Chr07	irgsp1_rep	three_prime_UTR	27504846	27505816	.	-	.	Parent=Os07t0654800-01
Chr07	irgsp1_rep	mRNA	27512362	27514309	.	+	.	ID=Os07t0654900-00;Name=Os07t0654900-00;Locus_id=Os07g0654900;Note=Similar to BLE2 protein.;Transcript_evidence=AK360226 (DDBJ);ORF_evidence=Q8S936 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);TENOR=Os07t0654900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	27512362	27513636	.	+	0	Parent=Os07t0654900-00
Chr07	irgsp1_rep	CDS	27513863	27514309	.	+	0	Parent=Os07t0654900-00
Chr07	irgsp1_rep	mRNA	27531947	27533378	.	+	.	ID=Os07t0655201-00;Name=Os07t0655201-00;Locus_id=Os07g0655201;Note=Similar to BLE2 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8S936 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);TENOR=Os07t0655201-00
Chr07	irgsp1_rep	CDS	27531947	27532615	.	+	0	Parent=Os07t0655201-00
Chr07	irgsp1_rep	CDS	27532932	27533378	.	+	0	Parent=Os07t0655201-00
Chr07	irgsp1_rep	mRNA	27545277	27550186	.	+	.	ID=Os07t0655300-01;Name=Os07t0655300-01;Locus_id=Os07g0655300;Oryzabase Gene Symbol Synonym(s)=OsMB11%2C MB11;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 11%2C MDC protein with a BTB domain 11%2C MDC protein having BTB domain 11;Note=Kelch related domain containing protein.;Transcript_evidence=AK073258 (DDBJ%2C Best hit);ORF_evidence=B6TPG4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);NIAS_FLcDNA=J033024L05;Oryzabase=21205;Expression=AK073258;TENOR=Os07t0655300-01;KEGG=Os07t0655300-01
Chr07	irgsp1_rep	five_prime_UTR	27545277	27545542	.	+	.	Parent=Os07t0655300-01
Chr07	irgsp1_rep	CDS	27545543	27546045	.	+	0	Parent=Os07t0655300-01
Chr07	irgsp1_rep	CDS	27547662	27548010	.	+	1	Parent=Os07t0655300-01
Chr07	irgsp1_rep	CDS	27548555	27548831	.	+	0	Parent=Os07t0655300-01
Chr07	irgsp1_rep	CDS	27549816	27549991	.	+	2	Parent=Os07t0655300-01
Chr07	irgsp1_rep	three_prime_UTR	27549992	27550186	.	+	.	Parent=Os07t0655300-01
Chr07	irgsp1_rep	mRNA	27550899	27555186	.	+	.	ID=Os07t0655400-01;Name=Os07t0655400-01;Locus_id=Os07g0655400;Oryzabase Gene Symbol Synonym(s)=OsRhmbd13%2C RHMBD13;Oryzabase Gene Name Synonym(s)=Rhomboid 13%2C RHOMBOID 13;Note=Protein of unknown function DUF1751%2C integral membrane%2C eukaryotic domain containing protein.;Transcript_evidence=AK102349 (DDBJ%2C Best hit);ORF_evidence=B6TIG9 (UniProt);InterPro=Protein of unknown function DUF1751%2C integral membrane%2C eukaryotic (IPR013861);NIAS_FLcDNA=J033091C24;Oryzabase=20069;Expression=AK102349;TENOR=Os07t0655400-01;KEGG=Os07t0655400-01
Chr07	irgsp1_rep	five_prime_UTR	27550899	27551130	.	+	.	Parent=Os07t0655400-01
Chr07	irgsp1_rep	CDS	27551131	27551178	.	+	0	Parent=Os07t0655400-01
Chr07	irgsp1_rep	CDS	27551670	27551794	.	+	0	Parent=Os07t0655400-01
Chr07	irgsp1_rep	CDS	27552402	27552462	.	+	1	Parent=Os07t0655400-01
Chr07	irgsp1_rep	CDS	27553315	27553481	.	+	0	Parent=Os07t0655400-01
Chr07	irgsp1_rep	CDS	27553567	27553678	.	+	1	Parent=Os07t0655400-01
Chr07	irgsp1_rep	CDS	27553768	27553970	.	+	0	Parent=Os07t0655400-01
Chr07	irgsp1_rep	CDS	27554053	27554187	.	+	1	Parent=Os07t0655400-01
Chr07	irgsp1_rep	CDS	27554686	27554785	.	+	1	Parent=Os07t0655400-01
Chr07	irgsp1_rep	three_prime_UTR	27554786	27555186	.	+	.	Parent=Os07t0655400-01
Chr07	irgsp1_rep	mRNA	27555873	27566776	.	+	.	ID=Os07t0655500-01;Name=Os07t0655500-01;Locus_id=Os07g0655500;Note=Regulation of nuclear pre-mRNA protein domain containing protein.;Transcript_evidence=AK121027 (DDBJ%2C Best hit);ORF_evidence=Q8H3E3 (UniProt);InterPro=PWWP (IPR000313),RNA polymerase II%2C large subunit%2C CTD (IPR006569),ENTH/VHS (IPR008942);NIAS_FLcDNA=J023050D20;Expression=AK121027;TENOR=Os07t0655500-01;KEGG=Os07t0655500-01
Chr07	irgsp1_rep	five_prime_UTR	27555873	27556125	.	+	.	Parent=Os07t0655500-01
Chr07	irgsp1_rep	CDS	27556126	27556251	.	+	0	Parent=Os07t0655500-01
Chr07	irgsp1_rep	CDS	27558250	27558326	.	+	0	Parent=Os07t0655500-01
Chr07	irgsp1_rep	CDS	27559156	27561102	.	+	1	Parent=Os07t0655500-01
Chr07	irgsp1_rep	CDS	27562058	27562526	.	+	1	Parent=Os07t0655500-01
Chr07	irgsp1_rep	CDS	27563078	27563186	.	+	0	Parent=Os07t0655500-01
Chr07	irgsp1_rep	CDS	27563266	27563376	.	+	2	Parent=Os07t0655500-01
Chr07	irgsp1_rep	CDS	27563476	27563659	.	+	2	Parent=Os07t0655500-01
Chr07	irgsp1_rep	CDS	27564326	27564788	.	+	1	Parent=Os07t0655500-01
Chr07	irgsp1_rep	CDS	27564875	27565517	.	+	0	Parent=Os07t0655500-01
Chr07	irgsp1_rep	CDS	27565686	27565853	.	+	2	Parent=Os07t0655500-01
Chr07	irgsp1_rep	CDS	27566032	27566078	.	+	2	Parent=Os07t0655500-01
Chr07	irgsp1_rep	three_prime_UTR	27566079	27566139	.	+	.	Parent=Os07t0655500-01
Chr07	irgsp1_rep	three_prime_UTR	27566251	27566304	.	+	.	Parent=Os07t0655500-01
Chr07	irgsp1_rep	three_prime_UTR	27566410	27566776	.	+	.	Parent=Os07t0655500-01
Chr07	irgsp1_rep	mRNA	27569369	27571494	.	+	.	ID=Os07t0655600-01;Name=Os07t0655600-01;Locus_id=Os07g0655600;CGSNL Gene Symbol=PME21;CGSNL Gene Name=PECTIN METHYLESTERASE 21;Oryzabase Gene Symbol Synonym(s)=OsPME21;Oryzabase Gene Name Synonym(s)=pectin methylesterase 21;Note=Pectin lyase fold/virulence factor domain containing protein.;Transcript_evidence=AK119935 (DDBJ%2C Best hit);ORF_evidence=Q8H3E2 (UniProt);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=002-184-A11;Oryzabase=13185;Expression=AK119935;TENOR=Os07t0655600-01;KEGG=Os07t0655600-01
Chr07	irgsp1_rep	five_prime_UTR	27569369	27569369	.	+	.	Parent=Os07t0655600-01
Chr07	irgsp1_rep	CDS	27569370	27569626	.	+	0	Parent=Os07t0655600-01
Chr07	irgsp1_rep	CDS	27569818	27570031	.	+	1	Parent=Os07t0655600-01
Chr07	irgsp1_rep	CDS	27570803	27570907	.	+	0	Parent=Os07t0655600-01
Chr07	irgsp1_rep	CDS	27571060	27571410	.	+	0	Parent=Os07t0655600-01
Chr07	irgsp1_rep	three_prime_UTR	27571411	27571494	.	+	.	Parent=Os07t0655600-01
Chr07	irgsp1_rep	mRNA	27577343	27578696	.	+	.	ID=Os07t0655800-00;Name=Os07t0655800-00;Locus_id=Os07g0655800;Oryzabase Gene Symbol Synonym(s)=OS-RP2%2C LTPL2%2C OsLTPL2;Oryzabase Gene Name Synonym(s)=LTP (lipid transfer protein) family protein LTPL2;Note=Similar to Aspartic acid-rich protein.;Transcript_evidence=CT836086 (DDBJ%2C Best hit);ORF_evidence=NP_001150311.1 (RefSeq);Oryzabase=15170;TENOR=Os07t0655800-00;KEGG=Os07t0655800-00
Chr07	irgsp1_rep	five_prime_UTR	27577343	27577390	.	+	.	Parent=Os07t0655800-00
Chr07	irgsp1_rep	CDS	27577391	27577449	.	+	0	Parent=Os07t0655800-00
Chr07	irgsp1_rep	CDS	27577858	27577938	.	+	1	Parent=Os07t0655800-00
Chr07	irgsp1_rep	CDS	27577948	27578077	.	+	1	Parent=Os07t0655800-00
Chr07	irgsp1_rep	CDS	27578093	27578290	.	+	0	Parent=Os07t0655800-00
Chr07	irgsp1_rep	three_prime_UTR	27578291	27578696	.	+	.	Parent=Os07t0655800-00
Chr07	irgsp1_rep	mRNA	27577914	27578073	.	-	.	ID=Os07t0655851-00;Name=Os07t0655851-00;Locus_id=Os07g0655851;Note=Non-protein coding transcript.;Transcript_evidence=DQ862834 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0655851-00
Chr07	irgsp1_rep	exon	27577914	27578073	.	-	.	Parent=Os07t0655851-00
Chr07	irgsp1_rep	mRNA	27579597	27584114	.	+	.	ID=Os07t0655900-01;Name=Os07t0655900-01;Locus_id=Os07g0655900;Note=SNARE associated Golgi protein domain containing protein.;Transcript_evidence=AK069576 (DDBJ%2C Best hit);ORF_evidence=A2YPG8 (UniProt);InterPro=SNARE associated Golgi protein (IPR015414);NIAS_FLcDNA=J023019J17;Expression=AK069576;TENOR=Os07t0655900-01;KEGG=Os07t0655900-01
Chr07	irgsp1_rep	five_prime_UTR	27579597	27579749	.	+	.	Parent=Os07t0655900-01
Chr07	irgsp1_rep	CDS	27579750	27579845	.	+	0	Parent=Os07t0655900-01
Chr07	irgsp1_rep	CDS	27580610	27580671	.	+	0	Parent=Os07t0655900-01
Chr07	irgsp1_rep	CDS	27581068	27581122	.	+	1	Parent=Os07t0655900-01
Chr07	irgsp1_rep	CDS	27581748	27581846	.	+	0	Parent=Os07t0655900-01
Chr07	irgsp1_rep	CDS	27581926	27582012	.	+	0	Parent=Os07t0655900-01
Chr07	irgsp1_rep	CDS	27582531	27582647	.	+	0	Parent=Os07t0655900-01
Chr07	irgsp1_rep	CDS	27583059	27583151	.	+	0	Parent=Os07t0655900-01
Chr07	irgsp1_rep	CDS	27583495	27583525	.	+	0	Parent=Os07t0655900-01
Chr07	irgsp1_rep	CDS	27583768	27583937	.	+	2	Parent=Os07t0655900-01
Chr07	irgsp1_rep	three_prime_UTR	27583938	27584114	.	+	.	Parent=Os07t0655900-01
Chr07	irgsp1_rep	mRNA	27582529	27584099	.	+	.	ID=Os07t0655900-02;Name=Os07t0655900-02;Locus_id=Os07g0655900;Note=Similar to predicted protein.;Transcript_evidence=AK058607 (DDBJ%2C Best hit);ORF_evidence=A2YPG8 (UniProt);InterPro=SNARE associated Golgi protein (IPR015414);NIAS_FLcDNA=001-018-A05;Expression=AK058607;TENOR=Os07t0655900-02;KEGG=Os07t0655900-02
Chr07	irgsp1_rep	five_prime_UTR	27582529	27582530	.	+	.	Parent=Os07t0655900-02
Chr07	irgsp1_rep	CDS	27582531	27582647	.	+	0	Parent=Os07t0655900-02
Chr07	irgsp1_rep	CDS	27583059	27583151	.	+	0	Parent=Os07t0655900-02
Chr07	irgsp1_rep	CDS	27583495	27583525	.	+	0	Parent=Os07t0655900-02
Chr07	irgsp1_rep	CDS	27583768	27583937	.	+	2	Parent=Os07t0655900-02
Chr07	irgsp1_rep	three_prime_UTR	27583938	27584099	.	+	.	Parent=Os07t0655900-02
Chr07	irgsp1_rep	mRNA	27585048	27587362	.	+	.	ID=Os07t0656000-00;Name=Os07t0656000-00;Locus_id=Os07g0656000;Oryzabase Gene Symbol Synonym(s)=OsTBL24%2C TBL24;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 24;Note=Domain of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8H3D7 (UniProt);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);Oryzabase=21479;TENOR=Os07t0656000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	27585048	27585472	.	+	0	Parent=Os07t0656000-00
Chr07	irgsp1_rep	CDS	27585568	27585987	.	+	1	Parent=Os07t0656000-00
Chr07	irgsp1_rep	CDS	27586763	27586921	.	+	1	Parent=Os07t0656000-00
Chr07	irgsp1_rep	CDS	27587041	27587362	.	+	1	Parent=Os07t0656000-00
Chr07	irgsp1_rep	mRNA	27585104	27585695	.	-	.	ID=Os07t0656050-00;Name=Os07t0656050-00;Locus_id=Os07g0656050;Note=Hypothetical protein.;Transcript_evidence=BT087858 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0656050-00
Chr07	irgsp1_rep	five_prime_UTR	27585459	27585695	.	-	.	Parent=Os07t0656050-00
Chr07	irgsp1_rep	CDS	27585104	27585458	.	-	0	Parent=Os07t0656050-00
Chr07	irgsp1_rep	mRNA	27590461	27594190	.	-	.	ID=Os07t0656100-01;Name=Os07t0656100-01;Locus_id=Os07g0656100;Note=Similar to predicted protein.;Transcript_evidence=AK242090 (DDBJ%2C Best hit);ORF_evidence=Q8H3D6 (UniProt);InterPro=Choline transporter-like (IPR007603);NIAS_FLcDNA=J075140O11;TENOR=Os07t0656100-01;KEGG=Os07t0656100-01
Chr07	irgsp1_rep	five_prime_UTR	27593989	27594190	.	-	.	Parent=Os07t0656100-01
Chr07	irgsp1_rep	CDS	27593965	27593988	.	-	0	Parent=Os07t0656100-01
Chr07	irgsp1_rep	CDS	27593608	27593862	.	-	0	Parent=Os07t0656100-01
Chr07	irgsp1_rep	CDS	27591744	27592658	.	-	0	Parent=Os07t0656100-01
Chr07	irgsp1_rep	CDS	27591417	27591653	.	-	0	Parent=Os07t0656100-01
Chr07	irgsp1_rep	CDS	27590974	27591156	.	-	0	Parent=Os07t0656100-01
Chr07	irgsp1_rep	three_prime_UTR	27590461	27590973	.	-	.	Parent=Os07t0656100-01
Chr07	irgsp1_rep	mRNA	27615673	27618594	.	+	.	ID=Os07t0656200-01;Name=Os07t0656200-01;Locus_id=Os07g0656200;CGSNL Gene Symbol=BGLU26;CGSNL Gene Name=BETA-GLUCOSIDASE 26;Oryzabase Gene Symbol Synonym(s)=Os7bglu26%2C Os7BGlu26;Oryzabase Gene Name Synonym(s)=beta-glucosidase 26;Note=Similar to Beta-glucosidase 26.;Transcript_evidence=AK068499 (DDBJ%2C Best hit);ORF_evidence=A3BMZ5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J013155M12;Oryzabase=12099;TENOR=Os07t0656200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	27615673	27615676	.	+	.	Parent=Os07t0656200-01
Chr07	irgsp1_rep	CDS	27615677	27615920	.	+	0	Parent=Os07t0656200-01
Chr07	irgsp1_rep	CDS	27616016	27616074	.	+	2	Parent=Os07t0656200-01
Chr07	irgsp1_rep	CDS	27616185	27616260	.	+	0	Parent=Os07t0656200-01
Chr07	irgsp1_rep	CDS	27616356	27616427	.	+	2	Parent=Os07t0656200-01
Chr07	irgsp1_rep	CDS	27616514	27616605	.	+	2	Parent=Os07t0656200-01
Chr07	irgsp1_rep	three_prime_UTR	27616606	27616941	.	+	.	Parent=Os07t0656200-01
Chr07	irgsp1_rep	three_prime_UTR	27617070	27617185	.	+	.	Parent=Os07t0656200-01
Chr07	irgsp1_rep	three_prime_UTR	27617363	27617580	.	+	.	Parent=Os07t0656200-01
Chr07	irgsp1_rep	three_prime_UTR	27617693	27617724	.	+	.	Parent=Os07t0656200-01
Chr07	irgsp1_rep	three_prime_UTR	27617842	27617944	.	+	.	Parent=Os07t0656200-01
Chr07	irgsp1_rep	three_prime_UTR	27618051	27618594	.	+	.	Parent=Os07t0656200-01
Chr07	irgsp1_rep	mRNA	27619014	27620570	.	-	.	ID=Os07t0656300-00;Name=Os07t0656300-00;Locus_id=Os07g0656300;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3BMZ6 (UniProt);TENOR=Os07t0656300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	27620425	27620570	.	-	0	Parent=Os07t0656300-00
Chr07	irgsp1_rep	CDS	27620177	27620327	.	-	1	Parent=Os07t0656300-00
Chr07	irgsp1_rep	CDS	27619761	27620098	.	-	0	Parent=Os07t0656300-00
Chr07	irgsp1_rep	CDS	27619527	27619596	.	-	1	Parent=Os07t0656300-00
Chr07	irgsp1_rep	CDS	27619014	27619025	.	-	0	Parent=Os07t0656300-00
Chr07	irgsp1_rep	mRNA	27620792	27623614	.	+	.	ID=Os07t0656400-01;Name=Os07t0656400-01;Locus_id=Os07g0656400;Note=Protein of unknown function DUF288 domain containing protein.;Transcript_evidence=AK287887 (DDBJ%2C Best hit);ORF_evidence=A2YPH3 (UniProt);InterPro=Protein of unknown function DUF288 (IPR005049);NIAS_FLcDNA=J065208H16;TENOR=Os07t0656400-01;KEGG=Os07t0656400-01
Chr07	irgsp1_rep	five_prime_UTR	27620792	27620976	.	+	.	Parent=Os07t0656400-01
Chr07	irgsp1_rep	CDS	27620977	27622565	.	+	0	Parent=Os07t0656400-01
Chr07	irgsp1_rep	CDS	27622733	27622859	.	+	1	Parent=Os07t0656400-01
Chr07	irgsp1_rep	CDS	27622941	27623417	.	+	0	Parent=Os07t0656400-01
Chr07	irgsp1_rep	three_prime_UTR	27623418	27623614	.	+	.	Parent=Os07t0656400-01
Chr07	irgsp1_rep	mRNA	27623979	27626667	.	-	.	ID=Os07t0656500-00;Name=Os07t0656500-00;Locus_id=Os07g0656500;Oryzabase Gene Symbol Synonym(s)=chlH;Oryzabase Gene Name Synonym(s)=Magnesium-chelatase subunit H;Note=Similar to Magnesium-chelatase subunit H family protein%2C expressed.;Transcript_evidence=AK249924 (DDBJ);ORF_evidence=Q10M50 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Biological Process: chlorophyll biosynthetic process (GO:0015995),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: magnesium chelatase activity (GO:0016851);InterPro=CobN/magnesium chelatase (IPR003672),Magnesium-chelatase%2C subunit H (IPR011771),NAD(P)-binding domain (IPR016040);Oryzabase=9610;TENOR=Os07t0656500-00;KEGG=Os07t0656500-00 (EC:6.6.1.1)
Chr07	irgsp1_rep	five_prime_UTR	27626362	27626667	.	-	.	Parent=Os07t0656500-00
Chr07	irgsp1_rep	CDS	27625054	27626361	.	-	0	Parent=Os07t0656500-00
Chr07	irgsp1_rep	CDS	27624185	27624955	.	-	0	Parent=Os07t0656500-00
Chr07	irgsp1_rep	three_prime_UTR	27623979	27624184	.	-	.	Parent=Os07t0656500-00
Chr07	irgsp1_rep	mRNA	27628327	27629951	.	+	.	ID=Os07t0656600-01;Name=Os07t0656600-01;Locus_id=Os07g0656600;Note=Uncharacterised conserved protein UCP022348 domain containing protein.;Transcript_evidence=AK060061 (DDBJ%2C Best hit);ORF_evidence=B6SKX4 (UniProt);InterPro=Uncharacterised protein family UPF0114 (IPR005134),Uncharacterised protein family UPF0114%2C plant (IPR016804);NIAS_FLcDNA=006-305-F12;Expression=AK060061;TENOR=Os07t0656600-01;KEGG=Os07t0656600-01
Chr07	irgsp1_rep	five_prime_UTR	27628327	27628390	.	+	.	Parent=Os07t0656600-01
Chr07	irgsp1_rep	CDS	27628391	27628669	.	+	0	Parent=Os07t0656600-01
Chr07	irgsp1_rep	CDS	27628782	27628847	.	+	0	Parent=Os07t0656600-01
Chr07	irgsp1_rep	CDS	27628941	27629040	.	+	0	Parent=Os07t0656600-01
Chr07	irgsp1_rep	CDS	27629223	27629362	.	+	2	Parent=Os07t0656600-01
Chr07	irgsp1_rep	CDS	27629528	27629743	.	+	0	Parent=Os07t0656600-01
Chr07	irgsp1_rep	three_prime_UTR	27629744	27629951	.	+	.	Parent=Os07t0656600-01
Chr07	irgsp1_rep	mRNA	27629206	27629686	.	-	.	ID=Os07t0656650-00;Name=Os07t0656650-00;Locus_id=Os07g0656650;Note=Non-protein coding transcript.;Transcript_evidence=AK330826 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0656650-00
Chr07	irgsp1_rep	exon	27629479	27629686	.	-	.	Parent=Os07t0656650-00
Chr07	irgsp1_rep	exon	27629206	27629297	.	-	.	Parent=Os07t0656650-00
Chr07	irgsp1_rep	mRNA	27630736	27633075	.	+	.	ID=Os07t0656700-01;Name=Os07t0656700-01;Locus_id=Os07g0656700;Note=Uncharacterised conserved protein UCP022348 domain containing protein.;Transcript_evidence=AK241488 (DDBJ%2C Best hit);ORF_evidence=B6SKX4 (UniProt);InterPro=Uncharacterised protein family UPF0114 (IPR005134),Uncharacterised protein family UPF0114%2C plant (IPR016804);NIAS_FLcDNA=J065166M23;TENOR=Os07t0656700-01;KEGG=Os07t0656700-01
Chr07	irgsp1_rep	five_prime_UTR	27630736	27630836	.	+	.	Parent=Os07t0656700-01
Chr07	irgsp1_rep	CDS	27630837	27631139	.	+	0	Parent=Os07t0656700-01
Chr07	irgsp1_rep	CDS	27631233	27631310	.	+	0	Parent=Os07t0656700-01
Chr07	irgsp1_rep	CDS	27631480	27631579	.	+	0	Parent=Os07t0656700-01
Chr07	irgsp1_rep	CDS	27632257	27632399	.	+	2	Parent=Os07t0656700-01
Chr07	irgsp1_rep	CDS	27632822	27633058	.	+	0	Parent=Os07t0656700-01
Chr07	irgsp1_rep	three_prime_UTR	27633059	27633075	.	+	.	Parent=Os07t0656700-01
Chr07	irgsp1_rep	mRNA	27635604	27638590	.	+	.	ID=Os07t0656800-01;Name=Os07t0656800-01;Locus_id=Os07g0656800;Note=Similar to catalytic/ methyltransferase.;Transcript_evidence=AK099536 (DDBJ%2C Best hit);ORF_evidence=NP_191650.2 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Cellular Component: cytoplasm (GO:0005737),Molecular Function: thiopurine S-methyltransferase activity (GO:0008119);InterPro=Thiopurine S-methyltransferase (IPR008854);NIAS_FLcDNA=J013032A06;Expression=AK099536;TENOR=Os07t0656800-01;KEGG=Os07t0656800-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	27635604	27635606	.	+	.	Parent=Os07t0656800-01
Chr07	irgsp1_rep	CDS	27635607	27635967	.	+	0	Parent=Os07t0656800-01
Chr07	irgsp1_rep	CDS	27637020	27637216	.	+	2	Parent=Os07t0656800-01
Chr07	irgsp1_rep	three_prime_UTR	27637217	27637669	.	+	.	Parent=Os07t0656800-01
Chr07	irgsp1_rep	three_prime_UTR	27637765	27637846	.	+	.	Parent=Os07t0656800-01
Chr07	irgsp1_rep	three_prime_UTR	27638091	27638590	.	+	.	Parent=Os07t0656800-01
Chr07	irgsp1_rep	mRNA	27639160	27643492	.	-	.	ID=Os07t0656900-00;Name=Os07t0656900-00;Locus_id=Os07g0656900;CGSNL Gene Symbol=SCP40;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 40;Oryzabase Gene Symbol Synonym(s)=OsSCP40;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 40;Note=Similar to Serine carboxypepsidase (Fragment).;Transcript_evidence=AY224473 (DDBJ%2C Best hit);ORF_evidence=NP_001147904.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);Oryzabase=19219;Expression=AY224473;TENOR=Os07t0656900-00;KEGG=Os07t0656900-00 (EC:3.4.16.6)
Chr07	irgsp1_rep	five_prime_UTR	27643492	27643492	.	-	.	Parent=Os07t0656900-00
Chr07	irgsp1_rep	CDS	27643203	27643491	.	-	0	Parent=Os07t0656900-00
Chr07	irgsp1_rep	CDS	27642805	27643094	.	-	2	Parent=Os07t0656900-00
Chr07	irgsp1_rep	CDS	27642065	27642325	.	-	0	Parent=Os07t0656900-00
Chr07	irgsp1_rep	CDS	27641419	27641537	.	-	0	Parent=Os07t0656900-00
Chr07	irgsp1_rep	CDS	27639825	27639917	.	-	1	Parent=Os07t0656900-00
Chr07	irgsp1_rep	CDS	27639565	27639670	.	-	1	Parent=Os07t0656900-00
Chr07	irgsp1_rep	CDS	27639160	27639336	.	-	0	Parent=Os07t0656900-00
Chr07	irgsp1_rep	mRNA	27653023	27654081	.	-	.	ID=Os07t0657100-01;Name=Os07t0657100-01;Locus_id=Os07g0657100;RAP-DB Gene Symbol Synonym(s)=GLYI10%2C OsGLYI10%2C OsEnS-113%2C OsGly I;RAP-DB Gene Name Synonym(s)=GLYOXALASE I-10%2C glyoxalase I-10%2C endosperm-specific gene 113;CGSNL Gene Symbol=GLYI10;CGSNL Gene Name=GLYOXALASE I-10;Oryzabase Gene Symbol Synonym(s)=OsGLYI10%2C OsEnS-113;Oryzabase Gene Name Synonym(s)=glyoxalase I-10%2C endosperm-specific gene 113;Note=Glyoxalase I%2C Abiotic stress tolerance;Transcript_evidence=AK108253;ORF_evidence=Q7EYX8;InterPro=Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (IPR029068),Glyoxalase/fosfomycin resistance/dioxygenase domain (IPR004360);NIAS_FLcDNA=002-141-A02;Manual Curation=September 29%2C 2016;Literature_PMID=27639962;Oryzabase=9360;Expression=AK108253;TENOR=Os07t0657100-01;KEGG=Os07t0657100-01
Chr07	irgsp1_rep	five_prime_UTR	27654058	27654081	.	-	.	Parent=Os07t0657100-01
Chr07	irgsp1_rep	CDS	27653795	27654057	.	-	0	Parent=Os07t0657100-01
Chr07	irgsp1_rep	CDS	27653591	27653702	.	-	1	Parent=Os07t0657100-01
Chr07	irgsp1_rep	CDS	27653184	27653438	.	-	0	Parent=Os07t0657100-01
Chr07	irgsp1_rep	three_prime_UTR	27653023	27653183	.	-	.	Parent=Os07t0657100-01
Chr07	irgsp1_rep	mRNA	27656036	27665836	.	+	.	ID=Os07t0657200-01;Name=Os07t0657200-01;Locus_id=Os07g0657200;Oryzabase Gene Symbol Synonym(s)=OsWD40-148;Note=WD40/YVTN repeat-like domain containing protein.;Transcript_evidence=AK072927 (DDBJ%2C Best hit);ORF_evidence=Q94LY4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),Steroid receptor RNA activator-protein/coat protein complex II%2C Sec31 (IPR009917),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J023143H22;Oryzabase=10829;Expression=AK072927;TENOR=Os07t0657200-01;KEGG=Os07t0657200-01
Chr07	irgsp1_rep	five_prime_UTR	27656036	27656176	.	+	.	Parent=Os07t0657200-01
Chr07	irgsp1_rep	CDS	27656177	27656496	.	+	0	Parent=Os07t0657200-01
Chr07	irgsp1_rep	CDS	27656574	27656631	.	+	1	Parent=Os07t0657200-01
Chr07	irgsp1_rep	CDS	27656709	27656831	.	+	0	Parent=Os07t0657200-01
Chr07	irgsp1_rep	CDS	27657475	27657571	.	+	0	Parent=Os07t0657200-01
Chr07	irgsp1_rep	CDS	27657674	27657710	.	+	2	Parent=Os07t0657200-01
Chr07	irgsp1_rep	CDS	27657823	27657928	.	+	1	Parent=Os07t0657200-01
Chr07	irgsp1_rep	CDS	27658126	27658183	.	+	0	Parent=Os07t0657200-01
Chr07	irgsp1_rep	CDS	27658284	27658381	.	+	2	Parent=Os07t0657200-01
Chr07	irgsp1_rep	CDS	27658490	27658609	.	+	0	Parent=Os07t0657200-01
Chr07	irgsp1_rep	CDS	27659201	27659246	.	+	0	Parent=Os07t0657200-01
Chr07	irgsp1_rep	CDS	27659915	27660040	.	+	2	Parent=Os07t0657200-01
Chr07	irgsp1_rep	CDS	27660119	27660248	.	+	2	Parent=Os07t0657200-01
Chr07	irgsp1_rep	CDS	27660326	27660842	.	+	1	Parent=Os07t0657200-01
Chr07	irgsp1_rep	CDS	27660940	27661032	.	+	0	Parent=Os07t0657200-01
Chr07	irgsp1_rep	CDS	27661680	27661865	.	+	0	Parent=Os07t0657200-01
Chr07	irgsp1_rep	CDS	27661943	27662153	.	+	0	Parent=Os07t0657200-01
Chr07	irgsp1_rep	CDS	27662857	27662966	.	+	2	Parent=Os07t0657200-01
Chr07	irgsp1_rep	CDS	27663097	27663243	.	+	0	Parent=Os07t0657200-01
Chr07	irgsp1_rep	CDS	27663693	27663815	.	+	0	Parent=Os07t0657200-01
Chr07	irgsp1_rep	CDS	27664024	27664378	.	+	0	Parent=Os07t0657200-01
Chr07	irgsp1_rep	CDS	27664655	27664884	.	+	2	Parent=Os07t0657200-01
Chr07	irgsp1_rep	CDS	27665364	27665456	.	+	0	Parent=Os07t0657200-01
Chr07	irgsp1_rep	three_prime_UTR	27665457	27665836	.	+	.	Parent=Os07t0657200-01
Chr07	irgsp1_rep	mRNA	27656100	27665871	.	+	.	ID=Os07t0657200-02;Name=Os07t0657200-02;Locus_id=Os07g0657200;Oryzabase Gene Symbol Synonym(s)=OsWD40-148;Note=WD40/YVTN repeat-like domain containing protein.;Transcript_evidence=AK100911 (DDBJ%2C Best hit);ORF_evidence=Q94LY4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),Steroid receptor RNA activator-protein/coat protein complex II%2C Sec31 (IPR009917),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J023132O04;Oryzabase=10829;Expression=AK100911;TENOR=Os07t0657200-02;KEGG=Os07t0657200-02
Chr07	irgsp1_rep	five_prime_UTR	27656100	27656176	.	+	.	Parent=Os07t0657200-02
Chr07	irgsp1_rep	CDS	27656177	27656496	.	+	0	Parent=Os07t0657200-02
Chr07	irgsp1_rep	CDS	27656574	27656631	.	+	1	Parent=Os07t0657200-02
Chr07	irgsp1_rep	CDS	27656709	27656831	.	+	0	Parent=Os07t0657200-02
Chr07	irgsp1_rep	CDS	27657475	27657571	.	+	0	Parent=Os07t0657200-02
Chr07	irgsp1_rep	CDS	27657674	27657710	.	+	2	Parent=Os07t0657200-02
Chr07	irgsp1_rep	CDS	27657823	27657928	.	+	1	Parent=Os07t0657200-02
Chr07	irgsp1_rep	CDS	27658126	27658183	.	+	0	Parent=Os07t0657200-02
Chr07	irgsp1_rep	CDS	27658284	27658381	.	+	2	Parent=Os07t0657200-02
Chr07	irgsp1_rep	CDS	27658490	27658609	.	+	0	Parent=Os07t0657200-02
Chr07	irgsp1_rep	CDS	27659201	27659246	.	+	0	Parent=Os07t0657200-02
Chr07	irgsp1_rep	CDS	27659915	27660040	.	+	2	Parent=Os07t0657200-02
Chr07	irgsp1_rep	CDS	27660119	27660248	.	+	2	Parent=Os07t0657200-02
Chr07	irgsp1_rep	CDS	27660326	27660842	.	+	1	Parent=Os07t0657200-02
Chr07	irgsp1_rep	CDS	27660940	27661032	.	+	0	Parent=Os07t0657200-02
Chr07	irgsp1_rep	CDS	27661680	27661865	.	+	0	Parent=Os07t0657200-02
Chr07	irgsp1_rep	CDS	27661943	27662153	.	+	0	Parent=Os07t0657200-02
Chr07	irgsp1_rep	CDS	27662857	27662966	.	+	2	Parent=Os07t0657200-02
Chr07	irgsp1_rep	CDS	27663097	27663243	.	+	0	Parent=Os07t0657200-02
Chr07	irgsp1_rep	CDS	27663693	27663815	.	+	0	Parent=Os07t0657200-02
Chr07	irgsp1_rep	CDS	27664024	27664378	.	+	0	Parent=Os07t0657200-02
Chr07	irgsp1_rep	CDS	27664655	27664884	.	+	2	Parent=Os07t0657200-02
Chr07	irgsp1_rep	CDS	27665364	27665456	.	+	0	Parent=Os07t0657200-02
Chr07	irgsp1_rep	three_prime_UTR	27665457	27665871	.	+	.	Parent=Os07t0657200-02
Chr07	irgsp1_rep	mRNA	27660551	27665841	.	+	.	ID=Os07t0657200-03;Name=Os07t0657200-03;Locus_id=Os07g0657200;Oryzabase Gene Symbol Synonym(s)=OsWD40-148;Note=Similar to Sec31p.;Transcript_evidence=AK100264 (DDBJ%2C Best hit);ORF_evidence=Q94LY4 (UniProt);InterPro=Steroid receptor RNA activator-protein/coat protein complex II%2C Sec31 (IPR009917);NIAS_FLcDNA=J023064J03;Oryzabase=10829;Expression=AK100264;TENOR=Os07t0657200-03;KEGG=Os07t0657200-03
Chr07	irgsp1_rep	five_prime_UTR	27660551	27660551	.	+	.	Parent=Os07t0657200-03
Chr07	irgsp1_rep	CDS	27660552	27660842	.	+	0	Parent=Os07t0657200-03
Chr07	irgsp1_rep	CDS	27660940	27661032	.	+	0	Parent=Os07t0657200-03
Chr07	irgsp1_rep	CDS	27661680	27661865	.	+	0	Parent=Os07t0657200-03
Chr07	irgsp1_rep	CDS	27661943	27662153	.	+	0	Parent=Os07t0657200-03
Chr07	irgsp1_rep	CDS	27662857	27662966	.	+	2	Parent=Os07t0657200-03
Chr07	irgsp1_rep	CDS	27663097	27663243	.	+	0	Parent=Os07t0657200-03
Chr07	irgsp1_rep	CDS	27663693	27663815	.	+	0	Parent=Os07t0657200-03
Chr07	irgsp1_rep	CDS	27664024	27664378	.	+	0	Parent=Os07t0657200-03
Chr07	irgsp1_rep	CDS	27664655	27664884	.	+	2	Parent=Os07t0657200-03
Chr07	irgsp1_rep	CDS	27665364	27665456	.	+	0	Parent=Os07t0657200-03
Chr07	irgsp1_rep	three_prime_UTR	27665457	27665841	.	+	.	Parent=Os07t0657200-03
Chr07	irgsp1_rep	mRNA	27660741	27665836	.	+	.	ID=Os07t0657200-04;Name=Os07t0657200-04;Locus_id=Os07g0657200;Oryzabase Gene Symbol Synonym(s)=OsWD40-148;Note=Similar to Sec31p.;Transcript_evidence=AK104043 (DDBJ%2C Best hit);ORF_evidence=Q94LY4 (UniProt);InterPro=Steroid receptor RNA activator-protein/coat protein complex II%2C Sec31 (IPR009917);NIAS_FLcDNA=001-022-C10;Oryzabase=10829;Expression=AK104043;TENOR=Os07t0657200-04;KEGG=Os07t0657200-04
Chr07	irgsp1_rep	CDS	27660741	27660842	.	+	0	Parent=Os07t0657200-04
Chr07	irgsp1_rep	CDS	27660940	27661032	.	+	0	Parent=Os07t0657200-04
Chr07	irgsp1_rep	CDS	27661680	27661865	.	+	0	Parent=Os07t0657200-04
Chr07	irgsp1_rep	CDS	27661943	27662153	.	+	0	Parent=Os07t0657200-04
Chr07	irgsp1_rep	CDS	27662857	27662966	.	+	2	Parent=Os07t0657200-04
Chr07	irgsp1_rep	CDS	27663097	27663243	.	+	0	Parent=Os07t0657200-04
Chr07	irgsp1_rep	CDS	27663693	27663815	.	+	0	Parent=Os07t0657200-04
Chr07	irgsp1_rep	CDS	27664024	27664378	.	+	0	Parent=Os07t0657200-04
Chr07	irgsp1_rep	CDS	27664655	27664884	.	+	2	Parent=Os07t0657200-04
Chr07	irgsp1_rep	CDS	27665364	27665456	.	+	0	Parent=Os07t0657200-04
Chr07	irgsp1_rep	three_prime_UTR	27665457	27665836	.	+	.	Parent=Os07t0657200-04
Chr07	irgsp1_rep	mRNA	27677096	27679217	.	-	.	ID=Os07t0657300-01;Name=Os07t0657300-01;Locus_id=Os07g0657300;Note=Hypothetical protein.;Transcript_evidence=AK072234 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023002M05;TENOR=Os07t0657300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	27679216	27679217	.	-	.	Parent=Os07t0657300-01
Chr07	irgsp1_rep	CDS	27677566	27679215	.	-	0	Parent=Os07t0657300-01
Chr07	irgsp1_rep	three_prime_UTR	27677096	27677565	.	-	.	Parent=Os07t0657300-01
Chr07	irgsp1_rep	mRNA	27677463	27679473	.	+	.	ID=Os07t0657400-01;Name=Os07t0657400-01;Locus_id=Os07g0657400;Note=Glycosyltransferase AER61%2C uncharacterized domain containing protein.;Transcript_evidence=AK288068 (DDBJ%2C Best hit);ORF_evidence=B6SY55 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyltransferase AER61%2C uncharacterised (IPR007657);NIAS_FLcDNA=J075158A19;Oryzabase=15271;TENOR=Os07t0657400-01;KEGG=Os07t0657400-01
Chr07	irgsp1_rep	five_prime_UTR	27677463	27677523	.	+	.	Parent=Os07t0657400-01
Chr07	irgsp1_rep	CDS	27677524	27679191	.	+	0	Parent=Os07t0657400-01
Chr07	irgsp1_rep	three_prime_UTR	27679192	27679473	.	+	.	Parent=Os07t0657400-01
Chr07	irgsp1_rep	mRNA	27684419	27686520	.	+	.	ID=Os07t0657500-01;Name=Os07t0657500-01;Locus_id=Os07g0657500;Note=Zinc finger%2C C2H2-like domain containing protein.;Transcript_evidence=AK102906 (DDBJ%2C Best hit);ORF_evidence=B6TR71 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J033113G11;Expression=AK102906;TENOR=Os07t0657500-01;KEGG=Os07t0657500-01
Chr07	irgsp1_rep	five_prime_UTR	27684419	27684628	.	+	.	Parent=Os07t0657500-01
Chr07	irgsp1_rep	five_prime_UTR	27684717	27685178	.	+	.	Parent=Os07t0657500-01
Chr07	irgsp1_rep	CDS	27685179	27685346	.	+	0	Parent=Os07t0657500-01
Chr07	irgsp1_rep	CDS	27685483	27685620	.	+	0	Parent=Os07t0657500-01
Chr07	irgsp1_rep	CDS	27685725	27685846	.	+	0	Parent=Os07t0657500-01
Chr07	irgsp1_rep	CDS	27686022	27686190	.	+	1	Parent=Os07t0657500-01
Chr07	irgsp1_rep	three_prime_UTR	27686191	27686520	.	+	.	Parent=Os07t0657500-01
Chr07	irgsp1_rep	mRNA	27684440	27686436	.	+	.	ID=Os07t0657500-02;Name=Os07t0657500-02;Locus_id=Os07g0657500;Note=Similar to XIAP associated factor-1.;Transcript_evidence=AK058476 (DDBJ%2C Best hit);ORF_evidence=B6TR71 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=001-016-C04;Expression=AK058476;TENOR=Os07t0657500-02;KEGG=Os07t0657500-02
Chr07	irgsp1_rep	five_prime_UTR	27684440	27684566	.	+	.	Parent=Os07t0657500-02
Chr07	irgsp1_rep	CDS	27684567	27684628	.	+	0	Parent=Os07t0657500-02
Chr07	irgsp1_rep	CDS	27685211	27685346	.	+	1	Parent=Os07t0657500-02
Chr07	irgsp1_rep	CDS	27685483	27685620	.	+	0	Parent=Os07t0657500-02
Chr07	irgsp1_rep	CDS	27685725	27685846	.	+	0	Parent=Os07t0657500-02
Chr07	irgsp1_rep	CDS	27686022	27686190	.	+	1	Parent=Os07t0657500-02
Chr07	irgsp1_rep	three_prime_UTR	27686191	27686436	.	+	.	Parent=Os07t0657500-02
Chr07	irgsp1_rep	mRNA	27686536	27688834	.	-	.	ID=Os07t0657600-01;Name=Os07t0657600-01;Locus_id=Os07g0657600;Note=Hypothetical conserved gene.;Transcript_evidence=AK240797 (DDBJ%2C Best hit);ORF_evidence=Q8GS57 (UniProt);GO=Biological Process: DNA repair (GO:0006281),Biological Process: base-excision repair (GO:0006284),Molecular Function: catalytic activity (GO:0003824);InterPro=HhH-GPD domain (IPR003265),DNA glycosylase (IPR011257);NIAS_FLcDNA=J065002E03;TENOR=Os07t0657600-01;KEGG=Os07t0657600-01
Chr07	irgsp1_rep	five_prime_UTR	27688834	27688834	.	-	.	Parent=Os07t0657600-01
Chr07	irgsp1_rep	CDS	27688537	27688833	.	-	0	Parent=Os07t0657600-01
Chr07	irgsp1_rep	CDS	27688286	27688449	.	-	0	Parent=Os07t0657600-01
Chr07	irgsp1_rep	CDS	27687180	27687849	.	-	1	Parent=Os07t0657600-01
Chr07	irgsp1_rep	CDS	27686997	27687088	.	-	0	Parent=Os07t0657600-01
Chr07	irgsp1_rep	CDS	27686808	27686919	.	-	1	Parent=Os07t0657600-01
Chr07	irgsp1_rep	three_prime_UTR	27686536	27686807	.	-	.	Parent=Os07t0657600-01
Chr07	irgsp1_rep	mRNA	27694704	27699162	.	+	.	ID=Os07t0657900-01;Name=Os07t0657900-01;Locus_id=Os07g0657900;CGSNL Gene Symbol=NTRC;CGSNL Gene Name=CHLOROPLAST NADPH THIOREDOXIN REDUCTASE;Oryzabase Gene Symbol Synonym(s)=OsNTRC%2C NtrC%2C OsGRL15;Oryzabase Gene Name Synonym(s)=NADPH thioredoxin reductase%2C GRX-like protein 15%2C glutaredoxin-like protein 15%2C chloroplastic type NTR%2C chloroplastic type NADPH-dependent thioredoxin reductase;Note=Similar to Thioredoxin reductase.;Transcript_evidence=AK068311 (DDBJ%2C Best hit);ORF_evidence=B8B5I4 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Pyridine nucleotide-disulphide oxidoreductase%2C class-II (IPR000103),Pyridine nucleotide-disulphide oxidoreductase%2C class-II%2C active site (IPR008255),FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR013027),Pyridine nucleotide-disulphide oxidoreductase%2C FAD/NAD(P)-binding domain (IPR023753);NIAS_FLcDNA=J013151L11;Oryzabase=7374;Expression=AK068311;TENOR=Os07t0657900-01;KEGG=Os07t0657900-01 (EC:1.8.1.9)
Chr07	irgsp1_rep	five_prime_UTR	27694704	27694704	.	+	.	Parent=Os07t0657900-01
Chr07	irgsp1_rep	CDS	27694705	27694867	.	+	0	Parent=Os07t0657900-01
Chr07	irgsp1_rep	CDS	27695012	27695225	.	+	2	Parent=Os07t0657900-01
Chr07	irgsp1_rep	CDS	27695317	27695422	.	+	1	Parent=Os07t0657900-01
Chr07	irgsp1_rep	CDS	27695854	27696119	.	+	0	Parent=Os07t0657900-01
Chr07	irgsp1_rep	CDS	27696757	27696802	.	+	1	Parent=Os07t0657900-01
Chr07	irgsp1_rep	three_prime_UTR	27696803	27697059	.	+	.	Parent=Os07t0657900-01
Chr07	irgsp1_rep	three_prime_UTR	27697295	27697402	.	+	.	Parent=Os07t0657900-01
Chr07	irgsp1_rep	three_prime_UTR	27697855	27697941	.	+	.	Parent=Os07t0657900-01
Chr07	irgsp1_rep	three_prime_UTR	27698027	27698131	.	+	.	Parent=Os07t0657900-01
Chr07	irgsp1_rep	three_prime_UTR	27698574	27698704	.	+	.	Parent=Os07t0657900-01
Chr07	irgsp1_rep	three_prime_UTR	27698828	27699162	.	+	.	Parent=Os07t0657900-01
Chr07	irgsp1_rep	mRNA	27694622	27699049	.	+	.	ID=Os07t0657900-02;Name=Os07t0657900-02;Locus_id=Os07g0657900;RAP-DB Gene Symbol Synonym(s)=NTRC%2C OsNTRC%2C NtrC%2C OsGRL15;RAP-DB Gene Name Synonym(s)=CHLOROPLAST NADPH THIOREDOXIN REDUCTASE%2C NADPH thioredoxin reductase%2C GRX-like protein 15%2C glutaredoxin-like protein 15%2C chloroplastic type NTR%2C chloroplastic type NADPH-dependent thioredoxin reductase;CGSNL Gene Symbol=NTRC;CGSNL Gene Name=CHLOROPLAST NADPH THIOREDOXIN REDUCTASE;Oryzabase Gene Symbol Synonym(s)=OsNTRC%2C NtrC%2C OsGRL15;Oryzabase Gene Name Synonym(s)=NADPH thioredoxin reductase%2C GRX-like protein 15%2C glutaredoxin-like protein 15%2C chloroplastic type NTR%2C chloroplastic type NADPH-dependent thioredoxin reductase;Note=NADPH thioredoxin reductase%2C Chloroplast detoxification;Transcript_evidence=AJ582621;ORF_evidence=Q70G58;GO=Biological Process: removal of superoxide radicals (GO:0019430),Biological Process: cell redox homeostasis (GO:0045454),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: thioredoxin-disulfide reductase activity (GO:0004791),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Cellular Component: cytoplasm (GO:0005737);InterPro=Pyridine nucleotide-disulphide oxidoreductase%2C class-II (IPR000103),Thioredoxin reductase (IPR005982),Pyridine nucleotide-disulphide oxidoreductase%2C FAD/NAD(P)-binding domain (IPR023753),Pyridine nucleotide-disulphide oxidoreductase%2C NAD-binding domain (IPR001327),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766),Pyridine nucleotide-disulphide oxidoreductase%2C class-II%2C active site (IPR008255);Manual Curation=May 12%2C 2015;Literature_PMID=15292215,16891402,19345687;Oryzabase=7374
Chr07	irgsp1_rep	five_prime_UTR	27694622	27694677	.	+	.	Parent=Os07t0657900-02
Chr07	irgsp1_rep	CDS	27694678	27694867	.	+	0	Parent=Os07t0657900-02
Chr07	irgsp1_rep	CDS	27695012	27695225	.	+	2	Parent=Os07t0657900-02
Chr07	irgsp1_rep	CDS	27695317	27695422	.	+	1	Parent=Os07t0657900-02
Chr07	irgsp1_rep	CDS	27695854	27696119	.	+	0	Parent=Os07t0657900-02
Chr07	irgsp1_rep	CDS	27696780	27697059	.	+	1	Parent=Os07t0657900-02
Chr07	irgsp1_rep	CDS	27697295	27697402	.	+	0	Parent=Os07t0657900-02
Chr07	irgsp1_rep	CDS	27697855	27697941	.	+	0	Parent=Os07t0657900-02
Chr07	irgsp1_rep	CDS	27698027	27698131	.	+	0	Parent=Os07t0657900-02
Chr07	irgsp1_rep	CDS	27698574	27698704	.	+	0	Parent=Os07t0657900-02
Chr07	irgsp1_rep	CDS	27698828	27698888	.	+	1	Parent=Os07t0657900-02
Chr07	irgsp1_rep	three_prime_UTR	27698889	27699049	.	+	.	Parent=Os07t0657900-02
Chr07	irgsp1_rep	mRNA	27696813	27697467	.	-	.	ID=Os07t0657950-00;Name=Os07t0657950-00;Locus_id=Os07g0657950;Note=Hypothetical gene.;Transcript_evidence=BT083822 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0657950-00;KEGG=Os07t0657950-00
Chr07	irgsp1_rep	five_prime_UTR	27697207	27697467	.	-	.	Parent=Os07t0657950-00
Chr07	irgsp1_rep	five_prime_UTR	27697070	27697117	.	-	.	Parent=Os07t0657950-00
Chr07	irgsp1_rep	CDS	27696836	27697069	.	-	0	Parent=Os07t0657950-00
Chr07	irgsp1_rep	three_prime_UTR	27696813	27696835	.	-	.	Parent=Os07t0657950-00
Chr07	irgsp1_rep	mRNA	27699817	27701266	.	+	.	ID=Os07t0658000-01;Name=Os07t0658000-01;Locus_id=Os07g0658000;Note=Conserved hypothetical protein.;Transcript_evidence=AK107954 (DDBJ%2C Best hit);ORF_evidence=A2YPI8 (UniProt);NIAS_FLcDNA=002-135-C02;Expression=AK107954;TENOR=Os07t0658000-01;KEGG=Os07t0658000-01
Chr07	irgsp1_rep	five_prime_UTR	27699817	27700023	.	+	.	Parent=Os07t0658000-01
Chr07	irgsp1_rep	CDS	27700024	27700270	.	+	0	Parent=Os07t0658000-01
Chr07	irgsp1_rep	CDS	27700643	27700675	.	+	2	Parent=Os07t0658000-01
Chr07	irgsp1_rep	CDS	27700808	27700953	.	+	2	Parent=Os07t0658000-01
Chr07	irgsp1_rep	three_prime_UTR	27700954	27701266	.	+	.	Parent=Os07t0658000-01
Chr07	irgsp1_rep	mRNA	27701512	27705035	.	-	.	ID=Os07t0658100-01;Name=Os07t0658100-01;Locus_id=Os07g0658100;Note=Conserved hypothetical protein.;Transcript_evidence=AK240793 (DDBJ%2C Best hit);ORF_evidence=Q8GRS3 (UniProt);NIAS_FLcDNA=J065001J02;TENOR=Os07t0658100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	27705035	27705035	.	-	.	Parent=Os07t0658100-01
Chr07	irgsp1_rep	CDS	27704685	27705034	.	-	0	Parent=Os07t0658100-01
Chr07	irgsp1_rep	CDS	27704151	27704184	.	-	1	Parent=Os07t0658100-01
Chr07	irgsp1_rep	CDS	27703789	27704016	.	-	0	Parent=Os07t0658100-01
Chr07	irgsp1_rep	CDS	27703300	27703389	.	-	0	Parent=Os07t0658100-01
Chr07	irgsp1_rep	CDS	27702890	27702955	.	-	0	Parent=Os07t0658100-01
Chr07	irgsp1_rep	CDS	27702719	27702813	.	-	0	Parent=Os07t0658100-01
Chr07	irgsp1_rep	CDS	27701963	27702010	.	-	1	Parent=Os07t0658100-01
Chr07	irgsp1_rep	CDS	27701772	27701886	.	-	1	Parent=Os07t0658100-01
Chr07	irgsp1_rep	three_prime_UTR	27701512	27701771	.	-	.	Parent=Os07t0658100-01
Chr07	irgsp1_rep	mRNA	27706359	27709933	.	-	.	ID=Os07t0658200-01;Name=Os07t0658200-01;Locus_id=Os07g0658200;Note=Similar to 30S ribosomal protein S9.;Transcript_evidence=AK100864 (DDBJ%2C Best hit);ORF_evidence=XP_002877645.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S9 (IPR000754),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Ribosomal protein S5 domain 2-type fold (IPR020568),Ribosomal protein S9%2C conserved site (IPR020574);NIAS_FLcDNA=J023123P07;Expression=AK100864;TENOR=Os07t0658200-01;KEGG=Os07t0658200-01
Chr07	irgsp1_rep	five_prime_UTR	27709792	27709933	.	-	.	Parent=Os07t0658200-01
Chr07	irgsp1_rep	five_prime_UTR	27709287	27709568	.	-	.	Parent=Os07t0658200-01
Chr07	irgsp1_rep	CDS	27709271	27709286	.	-	0	Parent=Os07t0658200-01
Chr07	irgsp1_rep	CDS	27708223	27708663	.	-	2	Parent=Os07t0658200-01
Chr07	irgsp1_rep	CDS	27707729	27707809	.	-	2	Parent=Os07t0658200-01
Chr07	irgsp1_rep	CDS	27707427	27707518	.	-	2	Parent=Os07t0658200-01
Chr07	irgsp1_rep	three_prime_UTR	27707424	27707426	.	-	.	Parent=Os07t0658200-01
Chr07	irgsp1_rep	three_prime_UTR	27706359	27706944	.	-	.	Parent=Os07t0658200-01
Chr07	irgsp1_rep	mRNA	27706443	27709933	.	-	.	ID=Os07t0658200-02;Name=Os07t0658200-02;Locus_id=Os07g0658200;Note=Similar to 30S ribosomal protein S9.;Transcript_evidence=AK100166 (DDBJ%2C Best hit);ORF_evidence=XP_002877645.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S9 (IPR000754),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Ribosomal protein S5 domain 2-type fold (IPR020568),Ribosomal protein S9%2C conserved site (IPR020574);NIAS_FLcDNA=J023022A05;Expression=AK100166;TENOR=Os07t0658200-02;KEGG=Os07t0658200-02
Chr07	irgsp1_rep	five_prime_UTR	27709905	27709933	.	-	.	Parent=Os07t0658200-02
Chr07	irgsp1_rep	CDS	27709271	27709904	.	-	0	Parent=Os07t0658200-02
Chr07	irgsp1_rep	CDS	27708223	27708663	.	-	2	Parent=Os07t0658200-02
Chr07	irgsp1_rep	CDS	27707729	27707809	.	-	2	Parent=Os07t0658200-02
Chr07	irgsp1_rep	CDS	27707427	27707518	.	-	2	Parent=Os07t0658200-02
Chr07	irgsp1_rep	three_prime_UTR	27707424	27707426	.	-	.	Parent=Os07t0658200-02
Chr07	irgsp1_rep	three_prime_UTR	27706443	27706944	.	-	.	Parent=Os07t0658200-02
Chr07	irgsp1_rep	mRNA	27713321	27722641	.	+	.	ID=Os07t0658300-01;Name=Os07t0658300-01;Locus_id=Os07g0658300;RAP-DB Gene Symbol Synonym(s)=SPIN6%2C Spin6;RAP-DB Gene Name Synonym(s)=SPL11-interacting Protein 6%2C SPL11-interacting protein6;Oryzabase Gene Symbol Synonym(s)=SPIN6%2C Spin6%2C SIP11;Oryzabase Gene Name Synonym(s)=SPL11-interacting Protein 6%2C SPL11-interacting protein6%2C SKIP interacting protein 11%2C SKIPa-interacting protein 11%2C SKIPa-interacting protein 11;Note=Rho GTPase-activating protein%2C Target of the E3 ligase SPL11%2C Negative regulation of programmed cell death and innate immunity;Transcript_evidence=AK103870;ORF_evidence=Q0D3Z0;GO=Biological Process: signal transduction (GO:0007165);InterPro=PH domain-like (IPR011993),Pleckstrin homology domain (IPR001849),Rho GTPase activation protein (IPR008936),Rho GTPase-activating protein domain (IPR000198),Ternary complex factor MIP1%2C leucine-zipper (IPR025757);NIAS_FLcDNA=J033149H24;Manual Curation=March 4%2C 2016;Literature_PMID=25658451;Oryzabase=20006;Expression=AK103870;TENOR=Os07t0658300-01;KEGG=Os07t0658300-01
Chr07	irgsp1_rep	five_prime_UTR	27713321	27713573	.	+	.	Parent=Os07t0658300-01
Chr07	irgsp1_rep	CDS	27713574	27713672	.	+	0	Parent=Os07t0658300-01
Chr07	irgsp1_rep	CDS	27714663	27714699	.	+	0	Parent=Os07t0658300-01
Chr07	irgsp1_rep	CDS	27714783	27714859	.	+	2	Parent=Os07t0658300-01
Chr07	irgsp1_rep	CDS	27715851	27715921	.	+	0	Parent=Os07t0658300-01
Chr07	irgsp1_rep	CDS	27716091	27716169	.	+	1	Parent=Os07t0658300-01
Chr07	irgsp1_rep	CDS	27716305	27716449	.	+	0	Parent=Os07t0658300-01
Chr07	irgsp1_rep	CDS	27716542	27716661	.	+	2	Parent=Os07t0658300-01
Chr07	irgsp1_rep	CDS	27716759	27716836	.	+	2	Parent=Os07t0658300-01
Chr07	irgsp1_rep	CDS	27716995	27717050	.	+	2	Parent=Os07t0658300-01
Chr07	irgsp1_rep	CDS	27717167	27717236	.	+	0	Parent=Os07t0658300-01
Chr07	irgsp1_rep	CDS	27717758	27717845	.	+	2	Parent=Os07t0658300-01
Chr07	irgsp1_rep	CDS	27718136	27718379	.	+	1	Parent=Os07t0658300-01
Chr07	irgsp1_rep	CDS	27718522	27718737	.	+	0	Parent=Os07t0658300-01
Chr07	irgsp1_rep	CDS	27719100	27719420	.	+	0	Parent=Os07t0658300-01
Chr07	irgsp1_rep	CDS	27719633	27719682	.	+	0	Parent=Os07t0658300-01
Chr07	irgsp1_rep	CDS	27720072	27720132	.	+	1	Parent=Os07t0658300-01
Chr07	irgsp1_rep	CDS	27720212	27720295	.	+	0	Parent=Os07t0658300-01
Chr07	irgsp1_rep	CDS	27720505	27720618	.	+	0	Parent=Os07t0658300-01
Chr07	irgsp1_rep	CDS	27720713	27720879	.	+	0	Parent=Os07t0658300-01
Chr07	irgsp1_rep	CDS	27721138	27721207	.	+	1	Parent=Os07t0658300-01
Chr07	irgsp1_rep	CDS	27721907	27722086	.	+	0	Parent=Os07t0658300-01
Chr07	irgsp1_rep	CDS	27722198	27722386	.	+	0	Parent=Os07t0658300-01
Chr07	irgsp1_rep	three_prime_UTR	27722387	27722641	.	+	.	Parent=Os07t0658300-01
Chr07	irgsp1_rep	mRNA	27717760	27721386	.	+	.	ID=Os07t0658300-02;Name=Os07t0658300-02;Locus_id=Os07g0658300;RAP-DB Gene Symbol Synonym(s)=Spin6.3%2C SPIN6.3;Oryzabase Gene Symbol Synonym(s)=SPIN6%2C Spin6%2C SIP11;Oryzabase Gene Name Synonym(s)=SPL11-interacting Protein 6%2C SPL11-interacting protein6%2C SKIP interacting protein 11%2C SKIPa-interacting protein 11%2C SKIPa-interacting protein 11;Note=Splicing isoform of SPIN6;Transcript_evidence=AK064580;ORF_evidence=Inferred from literature;GO=Biological Process: signal transduction (GO:0007165);InterPro=Rho GTPase activation protein (IPR008936),Rho GTPase-activating protein domain (IPR000198),Ternary complex factor MIP1%2C leucine-zipper (IPR025757);NIAS_FLcDNA=002-112-F01;Manual Curation=March 4%2C 2016;Literature_PMID=25658451;Oryzabase=20006;TENOR=Os07t0658300-02;KEGG=Os07t0658300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	27717760	27717789	.	+	.	Parent=Os07t0658300-02
Chr07	irgsp1_rep	CDS	27717790	27717845	.	+	0	Parent=Os07t0658300-02
Chr07	irgsp1_rep	CDS	27718136	27718379	.	+	1	Parent=Os07t0658300-02
Chr07	irgsp1_rep	CDS	27718522	27718737	.	+	0	Parent=Os07t0658300-02
Chr07	irgsp1_rep	CDS	27719100	27719420	.	+	0	Parent=Os07t0658300-02
Chr07	irgsp1_rep	CDS	27719633	27719682	.	+	0	Parent=Os07t0658300-02
Chr07	irgsp1_rep	CDS	27720072	27720132	.	+	1	Parent=Os07t0658300-02
Chr07	irgsp1_rep	CDS	27720212	27720295	.	+	0	Parent=Os07t0658300-02
Chr07	irgsp1_rep	CDS	27720505	27720618	.	+	0	Parent=Os07t0658300-02
Chr07	irgsp1_rep	CDS	27720713	27720879	.	+	0	Parent=Os07t0658300-02
Chr07	irgsp1_rep	CDS	27721138	27721216	.	+	1	Parent=Os07t0658300-02
Chr07	irgsp1_rep	three_prime_UTR	27721217	27721386	.	+	.	Parent=Os07t0658300-02
Chr07	irgsp1_rep	mRNA	27718522	27722659	.	+	.	ID=Os07t0658300-03;Name=Os07t0658300-03;Locus_id=Os07g0658300;RAP-DB Gene Symbol Synonym(s)=Spin6.2%2C SPIN6.2;Oryzabase Gene Symbol Synonym(s)=SPIN6%2C Spin6%2C SIP11;Oryzabase Gene Name Synonym(s)=SPL11-interacting Protein 6%2C SPL11-interacting protein6%2C SKIP interacting protein 11%2C SKIPa-interacting protein 11%2C SKIPa-interacting protein 11;Note=Splicing isoform of SPIN6;Transcript_evidence=AK058967;ORF_evidence=Inferred from literature;InterPro=Ternary complex factor MIP1%2C leucine-zipper (IPR025757);NIAS_FLcDNA=001-020-C09;Manual Curation=March 4%2C 2016;Literature_PMID=25658451;Oryzabase=20006;TENOR=Os07t0658300-03;KEGG=Os07t0658300-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	27718522	27718737	.	+	.	Parent=Os07t0658300-03
Chr07	irgsp1_rep	five_prime_UTR	27719100	27719249	.	+	.	Parent=Os07t0658300-03
Chr07	irgsp1_rep	CDS	27719250	27719420	.	+	0	Parent=Os07t0658300-03
Chr07	irgsp1_rep	CDS	27719633	27719682	.	+	0	Parent=Os07t0658300-03
Chr07	irgsp1_rep	CDS	27720072	27720132	.	+	1	Parent=Os07t0658300-03
Chr07	irgsp1_rep	CDS	27720212	27720295	.	+	0	Parent=Os07t0658300-03
Chr07	irgsp1_rep	CDS	27720505	27720618	.	+	0	Parent=Os07t0658300-03
Chr07	irgsp1_rep	CDS	27720713	27720879	.	+	0	Parent=Os07t0658300-03
Chr07	irgsp1_rep	CDS	27721138	27721207	.	+	1	Parent=Os07t0658300-03
Chr07	irgsp1_rep	CDS	27721904	27722086	.	+	0	Parent=Os07t0658300-03
Chr07	irgsp1_rep	CDS	27722198	27722386	.	+	0	Parent=Os07t0658300-03
Chr07	irgsp1_rep	three_prime_UTR	27722387	27722659	.	+	.	Parent=Os07t0658300-03
Chr07	irgsp1_rep	mRNA	27723089	27738212	.	-	.	ID=Os07t0658400-02;Name=Os07t0658400-02;Locus_id=Os07g0658400;RAP-DB Gene Symbol Synonym(s)=OsGLU%2C OsFd-GOGAT%2C Fd-GOGAT;RAP-DB Gene Name Synonym(s)=ferredoxin-glutamate synthase%2C ferredoxin-GOGAT%2C Ferredoxin-dependent Glu synthase%2C ferredoxin-dependent glutamate synthase;CGSNL Gene Symbol=ABC1;CGSNL Gene Name=ABNORMAL CYTOKININ RESPONSE 1;Oryzabase Gene Symbol Synonym(s)=OsABC1%2C SPL32%2C OsGLU%2C OsFd-GOGAT%2C Fd-GOGAT%2C ABC1/ OsFd-GOGAT;Oryzabase Gene Name Synonym(s)=ferredoxin-glutamate synthase%2C ferredoxin-GOGAT%2C Ferredoxin-dependent Glu synthase%2C ferredoxin-dependent glutamate synthase%2C spotted leaf 32;Note=Ferredoxin-dependent glutamate synthase%2C Leaf senescence and nitrogen remobilization;Transcript_evidence=AB024716;ORF_evidence=Q69RJ0;GO=Biological Process: glutamate biosynthetic process (GO:0006537),Biological Process: nitrogen compound metabolic process (GO:0006807),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: glutamate synthase activity (GO:0015930),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-NH2 group of donors (GO:0016638);InterPro=Nucleophile aminohydrolases%2C N-terminal (IPR029055),Glutamine amidotransferase type 2 domain (IPR017932),Aldolase-type TIM barrel (IPR013785),Glutamate synthase%2C central-N (IPR006982),Glutamate synthase domain (IPR002932),Glutamate synthase%2C alpha subunit%2C C-terminal (IPR002489);NIAS_FLcDNA=J023030A09 (truncated), J013132D11 (truncated);Manual Curation=January 11%2C 2017;Literature_PMID=28012016;Oryzabase=9313;Expression=AK068130;TENOR=Os07t0658400-02;KEGG=Os07t0658400-02 (EC:1.4.7.1);B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	27738129	27738212	.	-	.	Parent=Os07t0658400-02
Chr07	irgsp1_rep	CDS	27737880	27738128	.	-	0	Parent=Os07t0658400-02
Chr07	irgsp1_rep	CDS	27736831	27737143	.	-	0	Parent=Os07t0658400-02
Chr07	irgsp1_rep	CDS	27735866	27736308	.	-	2	Parent=Os07t0658400-02
Chr07	irgsp1_rep	CDS	27735616	27735747	.	-	0	Parent=Os07t0658400-02
Chr07	irgsp1_rep	CDS	27734986	27735084	.	-	0	Parent=Os07t0658400-02
Chr07	irgsp1_rep	CDS	27734803	27734873	.	-	0	Parent=Os07t0658400-02
Chr07	irgsp1_rep	CDS	27734189	27734285	.	-	1	Parent=Os07t0658400-02
Chr07	irgsp1_rep	CDS	27733182	27733274	.	-	0	Parent=Os07t0658400-02
Chr07	irgsp1_rep	CDS	27732943	27733088	.	-	0	Parent=Os07t0658400-02
Chr07	irgsp1_rep	CDS	27731892	27732051	.	-	1	Parent=Os07t0658400-02
Chr07	irgsp1_rep	CDS	27731551	27731661	.	-	0	Parent=Os07t0658400-02
Chr07	irgsp1_rep	CDS	27731251	27731466	.	-	0	Parent=Os07t0658400-02
Chr07	irgsp1_rep	CDS	27730309	27730466	.	-	0	Parent=Os07t0658400-02
Chr07	irgsp1_rep	CDS	27729838	27729967	.	-	1	Parent=Os07t0658400-02
Chr07	irgsp1_rep	CDS	27729551	27729609	.	-	0	Parent=Os07t0658400-02
Chr07	irgsp1_rep	CDS	27729340	27729445	.	-	1	Parent=Os07t0658400-02
Chr07	irgsp1_rep	CDS	27729036	27729132	.	-	0	Parent=Os07t0658400-02
Chr07	irgsp1_rep	CDS	27728299	27728414	.	-	2	Parent=Os07t0658400-02
Chr07	irgsp1_rep	CDS	27728008	27728205	.	-	0	Parent=Os07t0658400-02
Chr07	irgsp1_rep	CDS	27727791	27727901	.	-	0	Parent=Os07t0658400-02
Chr07	irgsp1_rep	CDS	27727179	27727418	.	-	0	Parent=Os07t0658400-02
Chr07	irgsp1_rep	CDS	27726861	27726959	.	-	0	Parent=Os07t0658400-02
Chr07	irgsp1_rep	CDS	27726160	27726255	.	-	0	Parent=Os07t0658400-02
Chr07	irgsp1_rep	CDS	27725887	27726084	.	-	0	Parent=Os07t0658400-02
Chr07	irgsp1_rep	CDS	27725702	27725776	.	-	0	Parent=Os07t0658400-02
Chr07	irgsp1_rep	CDS	27725449	27725577	.	-	0	Parent=Os07t0658400-02
Chr07	irgsp1_rep	CDS	27725267	27725365	.	-	0	Parent=Os07t0658400-02
Chr07	irgsp1_rep	CDS	27724921	27725063	.	-	0	Parent=Os07t0658400-02
Chr07	irgsp1_rep	CDS	27724746	27724839	.	-	1	Parent=Os07t0658400-02
Chr07	irgsp1_rep	CDS	27724419	27724657	.	-	0	Parent=Os07t0658400-02
Chr07	irgsp1_rep	CDS	27724262	27724340	.	-	1	Parent=Os07t0658400-02
Chr07	irgsp1_rep	CDS	27723811	27723894	.	-	0	Parent=Os07t0658400-02
Chr07	irgsp1_rep	CDS	27723560	27723727	.	-	0	Parent=Os07t0658400-02
Chr07	irgsp1_rep	three_prime_UTR	27723089	27723559	.	-	.	Parent=Os07t0658400-02
Chr07	irgsp1_rep	mRNA	27742675	27743998	.	+	.	ID=Os07t0658500-00;Name=Os07t0658500-00;Locus_id=Os07g0658500;Note=Hypothetical conserved gene.;Transcript_evidence=AK068568 (DDBJ%2C Secondary hit);ORF_evidence=NP_001175321.1 (RefSeq);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: polynucleotide adenylyltransferase activity (GO:0004652);InterPro=Poly(A) polymerase%2C central domain (IPR007012);Expression=AK068568;TENOR=Os07t0658500-00;KEGG=Os07t0658500-00
Chr07	irgsp1_rep	five_prime_UTR	27742675	27742760	.	+	.	Parent=Os07t0658500-00
Chr07	irgsp1_rep	CDS	27742761	27743218	.	+	0	Parent=Os07t0658500-00
Chr07	irgsp1_rep	CDS	27743225	27743810	.	+	1	Parent=Os07t0658500-00
Chr07	irgsp1_rep	three_prime_UTR	27743811	27743998	.	+	.	Parent=Os07t0658500-00
Chr07	irgsp1_rep	mRNA	27742427	27743741	.	-	.	ID=Os07t0658550-00;Name=Os07t0658550-00;Locus_id=Os07g0658550;Note=Conserved hypothetical protein.;Transcript_evidence=AK100220 (DDBJ%2C Secondary hit);ORF_evidence=Q6YVF6 (UniProt);TENOR=Os07t0658550-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	27743489	27743741	.	-	.	Parent=Os07t0658550-00
Chr07	irgsp1_rep	CDS	27743225	27743488	.	-	0	Parent=Os07t0658550-00
Chr07	irgsp1_rep	CDS	27742844	27743218	.	-	0	Parent=Os07t0658550-00
Chr07	irgsp1_rep	three_prime_UTR	27742427	27742843	.	-	.	Parent=Os07t0658550-00
Chr07	irgsp1_rep	mRNA	27746066	27747742	.	+	.	ID=Os07t0658600-00;Name=Os07t0658600-00;Locus_id=Os07g0658600;Note=Similar to Nucleoid DNA-binding-like protein.;Transcript_evidence=BT033478 (DDBJ);ORF_evidence=B6TDX6 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);TENOR=Os07t0658600-00;KEGG=Os07t0658600-00
Chr07	irgsp1_rep	five_prime_UTR	27746066	27746348	.	+	.	Parent=Os07t0658600-00
Chr07	irgsp1_rep	CDS	27746349	27747698	.	+	0	Parent=Os07t0658600-00
Chr07	irgsp1_rep	three_prime_UTR	27747699	27747742	.	+	.	Parent=Os07t0658600-00
Chr07	irgsp1_rep	mRNA	27752803	27757305	.	-	.	ID=Os07t0658700-01;Name=Os07t0658700-01;Locus_id=Os07g0658700;Note=Phosphatidylinositol-4-phosphate 5-kinase family protein.;Transcript_evidence=AK071875 (DDBJ%2C Best hit);ORF_evidence=B8B5I8 (UniProt);GO=Biological Process: phosphatidylinositol metabolic process (GO:0046488),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphatidylinositol phosphate kinase activity (GO:0016307),Molecular Function: 1-phosphatidylinositol-4-phosphate 5-kinase activity (GO:0016308);InterPro=Phosphatidylinositol-4-phosphate 5-kinase%2C core (IPR002498),MORN motif (IPR003409),Phosphatidylinositol-4-phosphate 5-kinase%2C core%2C subgroup (IPR016034),Phosphatidylinositol-4-phosphate 5-kinase%2C plant (IPR017163),Phosphatidylinositol-4-phosphate 5-kinase (IPR023610);NIAS_FLcDNA=J013038A02;Expression=AK071875;TENOR=Os07t0658700-01;KEGG=Os07t0658700-01 (EC:2.7.1.68)
Chr07	irgsp1_rep	five_prime_UTR	27757008	27757305	.	-	.	Parent=Os07t0658700-01
Chr07	irgsp1_rep	CDS	27755764	27757007	.	-	0	Parent=Os07t0658700-01
Chr07	irgsp1_rep	CDS	27755302	27755466	.	-	1	Parent=Os07t0658700-01
Chr07	irgsp1_rep	CDS	27755045	27755210	.	-	1	Parent=Os07t0658700-01
Chr07	irgsp1_rep	CDS	27754831	27754947	.	-	0	Parent=Os07t0658700-01
Chr07	irgsp1_rep	CDS	27754521	27754714	.	-	0	Parent=Os07t0658700-01
Chr07	irgsp1_rep	CDS	27754320	27754426	.	-	1	Parent=Os07t0658700-01
Chr07	irgsp1_rep	CDS	27754125	27754209	.	-	2	Parent=Os07t0658700-01
Chr07	irgsp1_rep	CDS	27753254	27753551	.	-	1	Parent=Os07t0658700-01
Chr07	irgsp1_rep	three_prime_UTR	27752803	27753253	.	-	.	Parent=Os07t0658700-01
Chr07	irgsp1_rep	mRNA	27776219	27776497	.	-	.	ID=Os07t0659100-01;Name=Os07t0659100-01;Locus_id=Os07g0659100;Note=Conserved hypothetical protein.;Transcript_evidence=AK242379 (DDBJ%2C Best hit);ORF_evidence=Q8GSH6 (UniProt);NIAS_FLcDNA=J080042E17;TENOR=Os07t0659100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	27776497	27776497	.	-	.	Parent=Os07t0659100-01
Chr07	irgsp1_rep	CDS	27776431	27776496	.	-	0	Parent=Os07t0659100-01
Chr07	irgsp1_rep	three_prime_UTR	27776219	27776430	.	-	.	Parent=Os07t0659100-01
Chr07	irgsp1_rep	mRNA	27781056	27781992	.	+	.	ID=Os07t0659300-01;Name=Os07t0659300-01;Locus_id=Os07g0659300;Note=Conserved hypothetical protein.;Transcript_evidence=AK069789 (DDBJ%2C Best hit);ORF_evidence=Q8GRN2 (UniProt);NIAS_FLcDNA=J023034O04;Expression=AK069789;TENOR=Os07t0659300-01;KEGG=Os07t0659300-01
Chr07	irgsp1_rep	five_prime_UTR	27781056	27781070	.	+	.	Parent=Os07t0659300-01
Chr07	irgsp1_rep	CDS	27781071	27781772	.	+	0	Parent=Os07t0659300-01
Chr07	irgsp1_rep	three_prime_UTR	27781773	27781992	.	+	.	Parent=Os07t0659300-01
Chr07	irgsp1_rep	mRNA	27783743	27786614	.	-	.	ID=Os07t0659400-00;Name=Os07t0659400-00;Locus_id=Os07g0659400;Note=Similar to rhythmically expressed protein.;Transcript_evidence=DQ103591 (DDBJ%2C Best hit);ORF_evidence=NP_001147144.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphoglycolate phosphatase activity (GO:0008967),Molecular Function: hydrolase activity (GO:0016787);InterPro=Haloacid dehalogenase/epoxide hydrolase (IPR005833),Haloacid dehalogenase-like hydrolase (IPR005834),HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 (IPR006402),HAD-superfamily hydrolase%2C subfamily IA%2C variant 1 (IPR006439),HAD-superfamily hydrolase%2C subfamily IA%2C REG-2-like (IPR011949),HAD-like domain (IPR023214);TENOR=Os07t0659400-00;KEGG=Os07t0659400-00
Chr07	irgsp1_rep	five_prime_UTR	27786613	27786614	.	-	.	Parent=Os07t0659400-00
Chr07	irgsp1_rep	CDS	27786454	27786612	.	-	0	Parent=Os07t0659400-00
Chr07	irgsp1_rep	CDS	27785847	27785953	.	-	0	Parent=Os07t0659400-00
Chr07	irgsp1_rep	CDS	27784572	27784680	.	-	1	Parent=Os07t0659400-00
Chr07	irgsp1_rep	CDS	27784325	27784486	.	-	0	Parent=Os07t0659400-00
Chr07	irgsp1_rep	CDS	27784050	27784223	.	-	0	Parent=Os07t0659400-00
Chr07	irgsp1_rep	CDS	27783848	27783877	.	-	0	Parent=Os07t0659400-00
Chr07	irgsp1_rep	three_prime_UTR	27783743	27783847	.	-	.	Parent=Os07t0659400-00
Chr07	irgsp1_rep	mRNA	27791121	27799497	.	-	.	ID=Os07t0659500-01;Name=Os07t0659500-01;Locus_id=Os07g0659500;Note=Non-SMC condensin subunit%2C XCAP-D2/Cnd1 family protein.;Transcript_evidence=AK073537 (DDBJ%2C Best hit);ORF_evidence=B9FUN8 (UniProt);GO=Biological Process: mitosis (GO:0007067),Biological Process: Chromosome condensation (GO:0030261),Cellular Component: nucleus (GO:0005634),Molecular Function: binding (GO:0005488);InterPro=Condensin complex%2C subunit 1 (IPR007673),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),Condensin complex%2C subunit 1%2C N-terminal (IPR024324);NIAS_FLcDNA=J033043H21;Expression=AK073537;TENOR=Os07t0659500-01;KEGG=Os07t0659500-01
Chr07	irgsp1_rep	five_prime_UTR	27799405	27799497	.	-	.	Parent=Os07t0659500-01
Chr07	irgsp1_rep	CDS	27799257	27799404	.	-	0	Parent=Os07t0659500-01
Chr07	irgsp1_rep	CDS	27797818	27798143	.	-	2	Parent=Os07t0659500-01
Chr07	irgsp1_rep	CDS	27797571	27797731	.	-	0	Parent=Os07t0659500-01
Chr07	irgsp1_rep	CDS	27796343	27797483	.	-	1	Parent=Os07t0659500-01
Chr07	irgsp1_rep	CDS	27796064	27796255	.	-	0	Parent=Os07t0659500-01
Chr07	irgsp1_rep	CDS	27794670	27795320	.	-	0	Parent=Os07t0659500-01
Chr07	irgsp1_rep	CDS	27794396	27794566	.	-	0	Parent=Os07t0659500-01
Chr07	irgsp1_rep	CDS	27794238	27794305	.	-	0	Parent=Os07t0659500-01
Chr07	irgsp1_rep	CDS	27793927	27794149	.	-	1	Parent=Os07t0659500-01
Chr07	irgsp1_rep	CDS	27793713	27793816	.	-	0	Parent=Os07t0659500-01
Chr07	irgsp1_rep	CDS	27793502	27793613	.	-	1	Parent=Os07t0659500-01
Chr07	irgsp1_rep	CDS	27793354	27793411	.	-	0	Parent=Os07t0659500-01
Chr07	irgsp1_rep	CDS	27792658	27792809	.	-	2	Parent=Os07t0659500-01
Chr07	irgsp1_rep	CDS	27792346	27792541	.	-	0	Parent=Os07t0659500-01
Chr07	irgsp1_rep	CDS	27791971	27792147	.	-	2	Parent=Os07t0659500-01
Chr07	irgsp1_rep	CDS	27791810	27791894	.	-	2	Parent=Os07t0659500-01
Chr07	irgsp1_rep	CDS	27791615	27791627	.	-	1	Parent=Os07t0659500-01
Chr07	irgsp1_rep	three_prime_UTR	27791121	27791614	.	-	.	Parent=Os07t0659500-01
Chr07	irgsp1_rep	mRNA	27800556	27802446	.	-	.	ID=Os07t0659600-01;Name=Os07t0659600-01;Locus_id=Os07g0659600;RAP-DB Gene Symbol Synonym(s)=OsANN3;RAP-DB Gene Name Synonym(s)=annexin 3;CGSNL Gene Symbol=ANN6;CGSNL Gene Name=ANNEXIN 6;Oryzabase Gene Symbol Synonym(s)=OsANN6;Oryzabase Gene Name Synonym(s)=Annexin 6;Note=Calcium-dependent lipid binding annexin%2C Positive regulation of ABA-dependent drought and osmotic stresses;Transcript_evidence=AK359556 (barley);ORF_evidence=A0A0P0X9P6;GO=Molecular Function: calcium ion binding (GO:0005509),Molecular Function: calcium-dependent phospholipid binding (GO:0005544);InterPro=Annexin superfamily (IPR037104),Annexin (IPR001464),Annexin repeat (IPR018502),Annexin repeat%2C conserved site (IPR018252);Manual Curation=May 22%2C 2019;Literature_PMID=31084874;Oryzabase=15469;TENOR=Os07t0659600-00;Subcellular location=plasma membrane (GO:0005886), cell periphery (GO:0071944)
Chr07	irgsp1_rep	five_prime_UTR	27802412	27802446	.	-	.	Parent=Os07t0659600-01
Chr07	irgsp1_rep	CDS	27802336	27802411	.	-	0	Parent=Os07t0659600-01
Chr07	irgsp1_rep	CDS	27801797	27801960	.	-	2	Parent=Os07t0659600-01
Chr07	irgsp1_rep	CDS	27801458	27801694	.	-	0	Parent=Os07t0659600-01
Chr07	irgsp1_rep	CDS	27801108	27801332	.	-	0	Parent=Os07t0659600-01
Chr07	irgsp1_rep	CDS	27800859	27800948	.	-	0	Parent=Os07t0659600-01
Chr07	irgsp1_rep	CDS	27800556	27800759	.	-	0	Parent=Os07t0659600-01
Chr07	irgsp1_rep	mRNA	27803524	27805837	.	+	.	ID=Os07t0659700-01;Name=Os07t0659700-01;Locus_id=Os07g0659700;Oryzabase Gene Symbol Synonym(s)=Os_F0300;Note=Similar to SKIP5-like protein.;Transcript_evidence=AK061060 (DDBJ%2C Best hit);ORF_evidence=Q940D2 (UniProt);InterPro=Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=006-206-A01;Oryzabase=17521;TENOR=Os07t0659700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	27803524	27803524	.	+	.	Parent=Os07t0659700-01
Chr07	irgsp1_rep	CDS	27803525	27803745	.	+	0	Parent=Os07t0659700-01
Chr07	irgsp1_rep	CDS	27804727	27804840	.	+	1	Parent=Os07t0659700-01
Chr07	irgsp1_rep	CDS	27804930	27805008	.	+	1	Parent=Os07t0659700-01
Chr07	irgsp1_rep	CDS	27805154	27805212	.	+	0	Parent=Os07t0659700-01
Chr07	irgsp1_rep	CDS	27805311	27805656	.	+	1	Parent=Os07t0659700-01
Chr07	irgsp1_rep	three_prime_UTR	27805657	27805837	.	+	.	Parent=Os07t0659700-01
Chr07	irgsp1_rep	mRNA	27807792	27811531	.	+	.	ID=Os07t0659800-01;Name=Os07t0659800-01;Locus_id=Os07g0659800;Note=Similar to Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven in absentia homolog 5). Splice isoform 2.;Transcript_evidence=AK107155 (DDBJ%2C Best hit);ORF_evidence=B6SRI2 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Biological Process: multicellular organismal development (GO:0007275),Biological Process: protein ubiquitination (GO:0016567),Cellular Component: nucleus (GO:0005634),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Seven-in-absentia protein%2C sina (IPR004162),TRAF-like (IPR008974),Zinc finger%2C SIAH-type (IPR013010),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),TRAF-type (IPR013322),Seven In Absentia Homolog-type (IPR013323),Seven-in-absentia protein%2C TRAF-like domain (IPR018121);NIAS_FLcDNA=002-124-E07;Oryzabase=17594;Expression=AK107155;TENOR=Os07t0659800-01;KEGG=Os07t0659800-01 (EC:6.3.2.19)
Chr07	irgsp1_rep	five_prime_UTR	27807792	27807920	.	+	.	Parent=Os07t0659800-01
Chr07	irgsp1_rep	five_prime_UTR	27809309	27809333	.	+	.	Parent=Os07t0659800-01
Chr07	irgsp1_rep	CDS	27809334	27809534	.	+	0	Parent=Os07t0659800-01
Chr07	irgsp1_rep	CDS	27809977	27810363	.	+	0	Parent=Os07t0659800-01
Chr07	irgsp1_rep	CDS	27810755	27811075	.	+	0	Parent=Os07t0659800-01
Chr07	irgsp1_rep	three_prime_UTR	27811076	27811531	.	+	.	Parent=Os07t0659800-01
Chr07	irgsp1_rep	mRNA	27814171	27815216	.	-	.	ID=Os07t0659900-01;Name=Os07t0659900-01;Locus_id=Os07g0659900;Oryzabase Gene Symbol Synonym(s)=OsGRL16;Oryzabase Gene Name Synonym(s)=GRX-like protein 16%2C glutaredoxin-like protein 16;Note=Thioredoxin fold domain containing protein.;Transcript_evidence=AK060696 (DDBJ%2C Best hit);ORF_evidence=NP_001150724.1 (RefSeq);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin (IPR002109),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=001-030-D09;Oryzabase=13606;Expression=AK060696;TENOR=Os07t0659900-01;KEGG=Os07t0659900-01
Chr07	irgsp1_rep	five_prime_UTR	27815093	27815216	.	-	.	Parent=Os07t0659900-01
Chr07	irgsp1_rep	CDS	27814457	27815092	.	-	0	Parent=Os07t0659900-01
Chr07	irgsp1_rep	three_prime_UTR	27814171	27814456	.	-	.	Parent=Os07t0659900-01
Chr07	irgsp1_rep	mRNA	27819750	27823763	.	+	.	ID=Os07t0660000-00;Name=Os07t0660000-00;Locus_id=Os07g0660000;Note=Similar to cDNA clone:J013120J20%2C full insert sequence.;Transcript_evidence=AK331987 (DDBJ);ORF_evidence=B7EDZ1 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001);TENOR=Os07t0660000-00;KEGG=Os07t0660000-00
Chr07	irgsp1_rep	five_prime_UTR	27819750	27819821	.	+	.	Parent=Os07t0660000-00
Chr07	irgsp1_rep	CDS	27819822	27819972	.	+	0	Parent=Os07t0660000-00
Chr07	irgsp1_rep	CDS	27820059	27820188	.	+	2	Parent=Os07t0660000-00
Chr07	irgsp1_rep	CDS	27820307	27820376	.	+	1	Parent=Os07t0660000-00
Chr07	irgsp1_rep	CDS	27820713	27820775	.	+	0	Parent=Os07t0660000-00
Chr07	irgsp1_rep	CDS	27821320	27821394	.	+	0	Parent=Os07t0660000-00
Chr07	irgsp1_rep	CDS	27821614	27821733	.	+	0	Parent=Os07t0660000-00
Chr07	irgsp1_rep	CDS	27822087	27822128	.	+	0	Parent=Os07t0660000-00
Chr07	irgsp1_rep	CDS	27822230	27822304	.	+	0	Parent=Os07t0660000-00
Chr07	irgsp1_rep	CDS	27822488	27822634	.	+	0	Parent=Os07t0660000-00
Chr07	irgsp1_rep	CDS	27822744	27822881	.	+	0	Parent=Os07t0660000-00
Chr07	irgsp1_rep	CDS	27823027	27823141	.	+	0	Parent=Os07t0660000-00
Chr07	irgsp1_rep	CDS	27823237	27823325	.	+	2	Parent=Os07t0660000-00
Chr07	irgsp1_rep	CDS	27823641	27823763	.	+	0	Parent=Os07t0660000-00
Chr07	irgsp1_rep	mRNA	27823831	27824495	.	-	.	ID=Os07t0660100-01;Name=Os07t0660100-01;Locus_id=Os07g0660100;Note=Similar to predicted protein.;Transcript_evidence=AK120788 (DDBJ%2C Best hit);ORF_evidence=XP_002274851.1 (RefSeq);NIAS_FLcDNA=J023011I05;Expression=AK120788;TENOR=Os07t0660100-01;KEGG=Os07t0660100-01
Chr07	irgsp1_rep	five_prime_UTR	27824151	27824495	.	-	.	Parent=Os07t0660100-01
Chr07	irgsp1_rep	CDS	27824013	27824150	.	-	0	Parent=Os07t0660100-01
Chr07	irgsp1_rep	three_prime_UTR	27823831	27824012	.	-	.	Parent=Os07t0660100-01
Chr07	irgsp1_rep	mRNA	27827217	27831979	.	-	.	ID=Os07t0660200-01;Name=Os07t0660200-01;Locus_id=Os07g0660200;Oryzabase Gene Symbol Synonym(s)=CHR705%2C Chr705%2C OsCHR705;Oryzabase Gene Name Synonym(s)=CHD-related gene 705;Note=Similar to Chromatin remodeling complex subunit.;Transcript_evidence=AK067331 (DDBJ%2C Best hit);ORF_evidence=XP_002313369.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524);InterPro=Helicase%2C C-terminal (IPR001650);NIAS_FLcDNA=J013099F15;Oryzabase=10415;TENOR=Os07t0660200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	27831899	27831979	.	-	0	Parent=Os07t0660200-01
Chr07	irgsp1_rep	CDS	27831115	27831357	.	-	0	Parent=Os07t0660200-01
Chr07	irgsp1_rep	CDS	27830904	27831014	.	-	0	Parent=Os07t0660200-01
Chr07	irgsp1_rep	CDS	27830730	27830819	.	-	0	Parent=Os07t0660200-01
Chr07	irgsp1_rep	CDS	27830126	27830309	.	-	0	Parent=Os07t0660200-01
Chr07	irgsp1_rep	CDS	27829948	27830027	.	-	2	Parent=Os07t0660200-01
Chr07	irgsp1_rep	CDS	27829572	27829811	.	-	0	Parent=Os07t0660200-01
Chr07	irgsp1_rep	CDS	27829032	27829184	.	-	0	Parent=Os07t0660200-01
Chr07	irgsp1_rep	CDS	27828770	27828947	.	-	0	Parent=Os07t0660200-01
Chr07	irgsp1_rep	CDS	27828508	27828689	.	-	2	Parent=Os07t0660200-01
Chr07	irgsp1_rep	CDS	27827217	27827567	.	-	0	Parent=Os07t0660200-01
Chr07	irgsp1_rep	mRNA	27825945	27829618	.	-	.	ID=Os07t0660200-02;Name=Os07t0660200-02;Locus_id=Os07g0660200;Oryzabase Gene Symbol Synonym(s)=CHR705%2C Chr705%2C OsCHR705;Oryzabase Gene Name Synonym(s)=CHD-related gene 705;Note=Hypothetical conserved gene.;Transcript_evidence=AK063537 (DDBJ%2C Best hit);ORF_evidence=B9FUP1 (UniProt);NIAS_FLcDNA=001-117-C02;Oryzabase=10415;Expression=AK063537;TENOR=Os07t0660200-02;KEGG=Os07t0660200-02 (EC:3.6.1.-)
Chr07	irgsp1_rep	five_prime_UTR	27829617	27829618	.	-	.	Parent=Os07t0660200-02
Chr07	irgsp1_rep	CDS	27829572	27829616	.	-	0	Parent=Os07t0660200-02
Chr07	irgsp1_rep	CDS	27829032	27829184	.	-	0	Parent=Os07t0660200-02
Chr07	irgsp1_rep	CDS	27828770	27828947	.	-	0	Parent=Os07t0660200-02
Chr07	irgsp1_rep	CDS	27828508	27828689	.	-	2	Parent=Os07t0660200-02
Chr07	irgsp1_rep	CDS	27827220	27827567	.	-	0	Parent=Os07t0660200-02
Chr07	irgsp1_rep	CDS	27827050	27827140	.	-	0	Parent=Os07t0660200-02
Chr07	irgsp1_rep	CDS	27826394	27826881	.	-	2	Parent=Os07t0660200-02
Chr07	irgsp1_rep	three_prime_UTR	27825945	27826393	.	-	.	Parent=Os07t0660200-02
Chr07	irgsp1_rep	mRNA	27841389	27845407	.	-	.	ID=Os07t0660400-01;Name=Os07t0660400-01;Locus_id=Os07g0660400;Note=Similar to pseudouridine synthase family protein.;Transcript_evidence=AK065105 (DDBJ%2C Best hit);ORF_evidence=XP_002867828.1 (RefSeq);NIAS_FLcDNA=J013001N13;TENOR=Os07t0660400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	27845327	27845407	.	-	.	Parent=Os07t0660400-01
Chr07	irgsp1_rep	CDS	27845118	27845326	.	-	0	Parent=Os07t0660400-01
Chr07	irgsp1_rep	CDS	27844905	27845033	.	-	1	Parent=Os07t0660400-01
Chr07	irgsp1_rep	CDS	27844718	27844796	.	-	1	Parent=Os07t0660400-01
Chr07	irgsp1_rep	three_prime_UTR	27844553	27844717	.	-	.	Parent=Os07t0660400-01
Chr07	irgsp1_rep	three_prime_UTR	27844310	27844391	.	-	.	Parent=Os07t0660400-01
Chr07	irgsp1_rep	three_prime_UTR	27843780	27843895	.	-	.	Parent=Os07t0660400-01
Chr07	irgsp1_rep	three_prime_UTR	27843642	27843696	.	-	.	Parent=Os07t0660400-01
Chr07	irgsp1_rep	three_prime_UTR	27843447	27843558	.	-	.	Parent=Os07t0660400-01
Chr07	irgsp1_rep	three_prime_UTR	27842704	27842873	.	-	.	Parent=Os07t0660400-01
Chr07	irgsp1_rep	three_prime_UTR	27841389	27842198	.	-	.	Parent=Os07t0660400-01
Chr07	irgsp1_rep	mRNA	27841885	27845349	.	+	.	ID=Os07t0660433-00;Name=Os07t0660433-00;Locus_id=Os07g0660433;Note=Hypothetical protein.;Transcript_evidence=tplb0046d01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0660433-00
Chr07	irgsp1_rep	five_prime_UTR	27841885	27842194	.	+	.	Parent=Os07t0660433-00
Chr07	irgsp1_rep	five_prime_UTR	27842696	27842873	.	+	.	Parent=Os07t0660433-00
Chr07	irgsp1_rep	five_prime_UTR	27843447	27843551	.	+	.	Parent=Os07t0660433-00
Chr07	irgsp1_rep	five_prime_UTR	27843634	27843696	.	+	.	Parent=Os07t0660433-00
Chr07	irgsp1_rep	five_prime_UTR	27843780	27843881	.	+	.	Parent=Os07t0660433-00
Chr07	irgsp1_rep	five_prime_UTR	27844295	27844397	.	+	.	Parent=Os07t0660433-00
Chr07	irgsp1_rep	five_prime_UTR	27844557	27844569	.	+	.	Parent=Os07t0660433-00
Chr07	irgsp1_rep	CDS	27844570	27844803	.	+	0	Parent=Os07t0660433-00
Chr07	irgsp1_rep	CDS	27844907	27844924	.	+	0	Parent=Os07t0660433-00
Chr07	irgsp1_rep	three_prime_UTR	27844925	27845349	.	+	.	Parent=Os07t0660433-00
Chr07	irgsp1_rep	mRNA	27846309	27847727	.	+	.	ID=Os07t0660466-00;Name=Os07t0660466-00;Locus_id=Os07g0660466;Note=Hypothetical protein.;Transcript_evidence=AK356492 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0660466-00
Chr07	irgsp1_rep	CDS	27846309	27847727	.	+	0	Parent=Os07t0660466-00
Chr07	irgsp1_rep	mRNA	27846318	27847754	.	-	.	ID=Os07t0660500-00;Name=Os07t0660500-00;Locus_id=Os07g0660500;Note=Similar to Cis-zeatin O-glucosyltransferase 1 (EC 2.4.1.215) (cisZOG1).;Transcript_evidence=ab initio prediction;ORF_evidence=Q01IP0 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os07t0660500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	27846318	27847754	.	-	0	Parent=Os07t0660500-00
Chr07	irgsp1_rep	mRNA	27850797	27855081	.	+	.	ID=Os07t0660700-01;Name=Os07t0660700-01;Locus_id=Os07g0660700;Oryzabase Gene Symbol Synonym(s)=OsWD40-149;Note=WD repeat protein 55 domain containing protein.;Transcript_evidence=AK119617 (DDBJ%2C Best hit);ORF_evidence=NP_565782.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD repeat protein 55 (IPR017422),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=002-117-G09;Oryzabase=10830;Expression=AK119617;TENOR=Os07t0660700-01;KEGG=Os07t0660700-01
Chr07	irgsp1_rep	five_prime_UTR	27850797	27850893	.	+	.	Parent=Os07t0660700-01
Chr07	irgsp1_rep	CDS	27850894	27850988	.	+	0	Parent=Os07t0660700-01
Chr07	irgsp1_rep	CDS	27851098	27851130	.	+	1	Parent=Os07t0660700-01
Chr07	irgsp1_rep	CDS	27851714	27851778	.	+	1	Parent=Os07t0660700-01
Chr07	irgsp1_rep	CDS	27851985	27852072	.	+	2	Parent=Os07t0660700-01
Chr07	irgsp1_rep	CDS	27852158	27852230	.	+	1	Parent=Os07t0660700-01
Chr07	irgsp1_rep	CDS	27852554	27852660	.	+	0	Parent=Os07t0660700-01
Chr07	irgsp1_rep	CDS	27853174	27853216	.	+	1	Parent=Os07t0660700-01
Chr07	irgsp1_rep	CDS	27853339	27853395	.	+	0	Parent=Os07t0660700-01
Chr07	irgsp1_rep	CDS	27853484	27853560	.	+	0	Parent=Os07t0660700-01
Chr07	irgsp1_rep	CDS	27853800	27853845	.	+	1	Parent=Os07t0660700-01
Chr07	irgsp1_rep	CDS	27853943	27853989	.	+	0	Parent=Os07t0660700-01
Chr07	irgsp1_rep	CDS	27854077	27854150	.	+	1	Parent=Os07t0660700-01
Chr07	irgsp1_rep	CDS	27854235	27854290	.	+	2	Parent=Os07t0660700-01
Chr07	irgsp1_rep	CDS	27854464	27854590	.	+	0	Parent=Os07t0660700-01
Chr07	irgsp1_rep	CDS	27854712	27854785	.	+	2	Parent=Os07t0660700-01
Chr07	irgsp1_rep	three_prime_UTR	27854786	27855081	.	+	.	Parent=Os07t0660700-01
Chr07	irgsp1_rep	mRNA	27865026	27868232	.	+	.	ID=Os07t0661000-01;Name=Os07t0661000-01;Locus_id=Os07g0661000;Note=Adenosine/AMP deaminase domain containing protein.;Transcript_evidence=AK072514 (DDBJ%2C Best hit);ORF_evidence=B6TRX4 (UniProt);GO=Biological Process: purine ribonucleoside monophosphate biosynthetic process (GO:0009168),Molecular Function: deaminase activity (GO:0019239);InterPro=Adenosine/AMP deaminase (IPR001365);NIAS_FLcDNA=J023133M21;Expression=AK072514;TENOR=Os07t0661000-01;KEGG=Os07t0661000-01 (EC:3.5.4.4)
Chr07	irgsp1_rep	five_prime_UTR	27865026	27865088	.	+	.	Parent=Os07t0661000-01
Chr07	irgsp1_rep	CDS	27865089	27865192	.	+	0	Parent=Os07t0661000-01
Chr07	irgsp1_rep	CDS	27866072	27866142	.	+	1	Parent=Os07t0661000-01
Chr07	irgsp1_rep	CDS	27866377	27866468	.	+	2	Parent=Os07t0661000-01
Chr07	irgsp1_rep	CDS	27866542	27866601	.	+	0	Parent=Os07t0661000-01
Chr07	irgsp1_rep	CDS	27866709	27866930	.	+	0	Parent=Os07t0661000-01
Chr07	irgsp1_rep	CDS	27867029	27867105	.	+	0	Parent=Os07t0661000-01
Chr07	irgsp1_rep	CDS	27867197	27867266	.	+	1	Parent=Os07t0661000-01
Chr07	irgsp1_rep	CDS	27867372	27867485	.	+	0	Parent=Os07t0661000-01
Chr07	irgsp1_rep	CDS	27867564	27867630	.	+	0	Parent=Os07t0661000-01
Chr07	irgsp1_rep	CDS	27867838	27867942	.	+	2	Parent=Os07t0661000-01
Chr07	irgsp1_rep	CDS	27868049	27868173	.	+	2	Parent=Os07t0661000-01
Chr07	irgsp1_rep	three_prime_UTR	27868174	27868232	.	+	.	Parent=Os07t0661000-01
Chr07	irgsp1_rep	mRNA	27868843	27876572	.	-	.	ID=Os07t0661100-01;Name=Os07t0661100-01;Locus_id=Os07g0661100;Note=Glycosyl transferase%2C family 4 protein.;Transcript_evidence=AK287936 (DDBJ%2C Best hit);ORF_evidence=NP_001147607.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021),Molecular Function: phospho-N-acetylmuramoyl-pentapeptide-transferase activity (GO:0008963);InterPro=Glycosyl transferase%2C family 4 (IPR000715);NIAS_FLcDNA=J075004D23;TENOR=Os07t0661100-01;KEGG=Os07t0661100-01 (EC:2.7.8.15)
Chr07	irgsp1_rep	five_prime_UTR	27876482	27876572	.	-	.	Parent=Os07t0661100-01
Chr07	irgsp1_rep	CDS	27876102	27876481	.	-	0	Parent=Os07t0661100-01
Chr07	irgsp1_rep	CDS	27874661	27874748	.	-	1	Parent=Os07t0661100-01
Chr07	irgsp1_rep	CDS	27874471	27874562	.	-	0	Parent=Os07t0661100-01
Chr07	irgsp1_rep	CDS	27874250	27874368	.	-	1	Parent=Os07t0661100-01
Chr07	irgsp1_rep	CDS	27871514	27871629	.	-	2	Parent=Os07t0661100-01
Chr07	irgsp1_rep	CDS	27871307	27871434	.	-	0	Parent=Os07t0661100-01
Chr07	irgsp1_rep	CDS	27871128	27871214	.	-	1	Parent=Os07t0661100-01
Chr07	irgsp1_rep	CDS	27870316	27870376	.	-	1	Parent=Os07t0661100-01
Chr07	irgsp1_rep	CDS	27870159	27870199	.	-	0	Parent=Os07t0661100-01
Chr07	irgsp1_rep	CDS	27869953	27870073	.	-	1	Parent=Os07t0661100-01
Chr07	irgsp1_rep	CDS	27869339	27869398	.	-	0	Parent=Os07t0661100-01
Chr07	irgsp1_rep	three_prime_UTR	27868843	27869338	.	-	.	Parent=Os07t0661100-01
Chr07	irgsp1_rep	mRNA	27884460	27887982	.	-	.	ID=Os07t0661201-00;Name=Os07t0661201-00;Locus_id=Os07g0661201;Note=Non-protein coding transcript.;Transcript_evidence=BT084000 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0661201-00
Chr07	irgsp1_rep	exon	27887673	27887982	.	-	.	Parent=Os07t0661201-00
Chr07	irgsp1_rep	exon	27887215	27887383	.	-	.	Parent=Os07t0661201-00
Chr07	irgsp1_rep	exon	27886732	27886891	.	-	.	Parent=Os07t0661201-00
Chr07	irgsp1_rep	exon	27885935	27886159	.	-	.	Parent=Os07t0661201-00
Chr07	irgsp1_rep	exon	27885182	27885350	.	-	.	Parent=Os07t0661201-00
Chr07	irgsp1_rep	exon	27884460	27885092	.	-	.	Parent=Os07t0661201-00
Chr07	irgsp1_rep	mRNA	27884566	27888239	.	+	.	ID=Os07t0661300-01;Name=Os07t0661300-01;Locus_id=Os07g0661300;CGSNL Gene Symbol=UBP10;CGSNL Gene Name=UBIQUITIN-SPECIFIC PROCESSING PROTEASE 10;Oryzabase Gene Symbol Synonym(s)=OsUBP10;Oryzabase Gene Name Synonym(s)=ubiquitin-specific processing protease 10;Note=Similar to Ubiquitin-specific protease 24.;Transcript_evidence=AK060418 (DDBJ%2C Best hit);ORF_evidence=B9FUP4 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Molecular Function: ubiquitin thiolesterase activity (GO:0004221);InterPro=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (IPR001394),Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2%2C conserved site (IPR018200);NIAS_FLcDNA=001-010-F06;Oryzabase=22894;Expression=AK060418;TENOR=Os07t0661300-01;KEGG=Os07t0661300-01 (EC:3.1.2.15)
Chr07	irgsp1_rep	five_prime_UTR	27884566	27884567	.	+	.	Parent=Os07t0661300-01
Chr07	irgsp1_rep	CDS	27884568	27885089	.	+	0	Parent=Os07t0661300-01
Chr07	irgsp1_rep	CDS	27885173	27885360	.	+	0	Parent=Os07t0661300-01
Chr07	irgsp1_rep	CDS	27885943	27886184	.	+	1	Parent=Os07t0661300-01
Chr07	irgsp1_rep	CDS	27886757	27886899	.	+	2	Parent=Os07t0661300-01
Chr07	irgsp1_rep	CDS	27887228	27887404	.	+	0	Parent=Os07t0661300-01
Chr07	irgsp1_rep	CDS	27887683	27887880	.	+	0	Parent=Os07t0661300-01
Chr07	irgsp1_rep	three_prime_UTR	27887881	27888239	.	+	.	Parent=Os07t0661300-01
Chr07	irgsp1_rep	mRNA	27890235	27891316	.	-	.	ID=Os07t0661400-01;Name=Os07t0661400-01;Locus_id=Os07g0661400;Note=Conserved hypothetical protein.;Transcript_evidence=AK105973 (DDBJ%2C Best hit),AK068814 (DDBJ%2C Best hit),AK102682 (DDBJ%2C Best hit),AK107202 (DDBJ%2C Best hit);ORF_evidence=B8B5K1 (UniProt);NIAS_FLcDNA=001-205-F04,J013160F04,J033102K18,002-125-B04;Expression=AK105973;TENOR=Os07t0661400-01;KEGG=Os07t0661400-01
Chr07	irgsp1_rep	five_prime_UTR	27891216	27891316	.	-	.	Parent=Os07t0661400-01
Chr07	irgsp1_rep	five_prime_UTR	27891085	27891096	.	-	.	Parent=Os07t0661400-01
Chr07	irgsp1_rep	CDS	27890620	27891084	.	-	0	Parent=Os07t0661400-01
Chr07	irgsp1_rep	three_prime_UTR	27890235	27890619	.	-	.	Parent=Os07t0661400-01
Chr07	irgsp1_rep	mRNA	27901217	27901446	.	+	.	ID=Os07t0661450-00;Name=Os07t0661450-00;Locus_id=Os07g0661450;Note=Similar to predicted protein.;Transcript_evidence=EU941089 (DDBJ);ORF_evidence=XP_002327722.1 (RefSeq);TENOR=Os07t0661450-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	27901217	27901274	.	+	.	Parent=Os07t0661450-00
Chr07	irgsp1_rep	CDS	27901275	27901445	.	+	0	Parent=Os07t0661450-00
Chr07	irgsp1_rep	three_prime_UTR	27901446	27901446	.	+	.	Parent=Os07t0661450-00
Chr07	irgsp1_rep	mRNA	27903822	27905237	.	-	.	ID=Os07t0661500-00;Name=Os07t0661500-00;Locus_id=Os07g0661500;Note=Hypothetical conserved gene.;Transcript_evidence=EU951318 (DDBJ);ORF_evidence=Q69Q09 (UniProt);TENOR=Os07t0661500-00;KEGG=Os07t0661500-00
Chr07	irgsp1_rep	CDS	27904359	27905237	.	-	0	Parent=Os07t0661500-00
Chr07	irgsp1_rep	three_prime_UTR	27904201	27904358	.	-	.	Parent=Os07t0661500-00
Chr07	irgsp1_rep	three_prime_UTR	27903822	27904078	.	-	.	Parent=Os07t0661500-00
Chr07	irgsp1_rep	mRNA	27910540	27911163	.	-	.	ID=Os07t0661550-00;Name=Os07t0661550-00;Locus_id=Os07g0661550;Note=Similar to PHD finger family protein.;Transcript_evidence=AJ577391 (DDBJ);ORF_evidence=XP_002872016.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-type%2C conserved site (IPR019786),Zinc finger%2C PHD-finger (IPR019787);TENOR=Os07t0661550-00
Chr07	irgsp1_rep	CDS	27910540	27911163	.	-	0	Parent=Os07t0661550-00
Chr07	irgsp1_rep	mRNA	27915771	27921192	.	-	.	ID=Os07t0661600-01;Name=Os07t0661600-01;Locus_id=Os07g0661600;Oryzabase Gene Symbol Synonym(s)=OsRFPHC-4;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPHC-4%2C RING-HC protein 4;Note=Similar to RNA-binding protein-like protein.;Transcript_evidence=AK066432 (DDBJ%2C Best hit),AK061123 (DDBJ%2C Best hit),AK104664 (DDBJ%2C Best hit);ORF_evidence=NP_001149292.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J013064M13,006-207-G05,006-311-G08;Oryzabase=11788;Expression=AK066432;TENOR=Os07t0661600-01;KEGG=Os07t0661600-01
Chr07	irgsp1_rep	five_prime_UTR	27921046	27921192	.	-	.	Parent=Os07t0661600-01
Chr07	irgsp1_rep	CDS	27920981	27921045	.	-	0	Parent=Os07t0661600-01
Chr07	irgsp1_rep	CDS	27919068	27919218	.	-	1	Parent=Os07t0661600-01
Chr07	irgsp1_rep	CDS	27918917	27918983	.	-	0	Parent=Os07t0661600-01
Chr07	irgsp1_rep	CDS	27918594	27918828	.	-	2	Parent=Os07t0661600-01
Chr07	irgsp1_rep	CDS	27916612	27916822	.	-	1	Parent=Os07t0661600-01
Chr07	irgsp1_rep	three_prime_UTR	27915771	27916611	.	-	.	Parent=Os07t0661600-01
Chr07	irgsp1_rep	mRNA	27916303	27921188	.	-	.	ID=Os07t0661600-03;Name=Os07t0661600-03;Locus_id=Os07g0661600;Oryzabase Gene Symbol Synonym(s)=OsRFPHC-4;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPHC-4%2C RING-HC protein 4;Note=Similar to RNA-binding protein.;Transcript_evidence=AK065465 (DDBJ%2C Best hit);ORF_evidence=NP_001149292.1 (RefSeq);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J013014C10;Oryzabase=11788;Expression=AK065465;TENOR=Os07t0661600-03;KEGG=Os07t0661600-03
Chr07	irgsp1_rep	five_prime_UTR	27921046	27921188	.	-	.	Parent=Os07t0661600-03
Chr07	irgsp1_rep	CDS	27920981	27921045	.	-	0	Parent=Os07t0661600-03
Chr07	irgsp1_rep	CDS	27919068	27919218	.	-	1	Parent=Os07t0661600-03
Chr07	irgsp1_rep	CDS	27918917	27918983	.	-	0	Parent=Os07t0661600-03
Chr07	irgsp1_rep	CDS	27918503	27918828	.	-	2	Parent=Os07t0661600-03
Chr07	irgsp1_rep	three_prime_UTR	27916303	27918502	.	-	.	Parent=Os07t0661600-03
Chr07	irgsp1_rep	mRNA	27922243	27924569	.	-	.	ID=Os07t0661700-01;Name=Os07t0661700-01;Locus_id=Os07g0661700;Note=Conserved hypothetical protein.;Transcript_evidence=AK062339 (DDBJ%2C Best hit);ORF_evidence=A2YPL8 (UniProt);NIAS_FLcDNA=001-101-E10;Expression=AK062339;TENOR=Os07t0661700-01;KEGG=Os07t0661700-01
Chr07	irgsp1_rep	five_prime_UTR	27924533	27924569	.	-	.	Parent=Os07t0661700-01
Chr07	irgsp1_rep	CDS	27924458	27924532	.	-	0	Parent=Os07t0661700-01
Chr07	irgsp1_rep	CDS	27923535	27923574	.	-	0	Parent=Os07t0661700-01
Chr07	irgsp1_rep	CDS	27923348	27923448	.	-	2	Parent=Os07t0661700-01
Chr07	irgsp1_rep	CDS	27923175	27923261	.	-	0	Parent=Os07t0661700-01
Chr07	irgsp1_rep	three_prime_UTR	27923024	27923174	.	-	.	Parent=Os07t0661700-01
Chr07	irgsp1_rep	three_prime_UTR	27922746	27922793	.	-	.	Parent=Os07t0661700-01
Chr07	irgsp1_rep	three_prime_UTR	27922243	27922449	.	-	.	Parent=Os07t0661700-01
Chr07	irgsp1_rep	mRNA	27926158	27929980	.	+	.	ID=Os07t0661800-01;Name=Os07t0661800-01;Locus_id=Os07g0661800;Note=Similar to Nucleolar protein Nop56.;Transcript_evidence=AK107041 (DDBJ%2C Best hit);ORF_evidence=B6TNS0 (UniProt);InterPro=Pre-mRNA processing ribonucleoprotein%2C snoRNA-binding domain (IPR002687),NOP5%2C N-terminal (IPR012974),NOSIC (IPR012976);NIAS_FLcDNA=002-121-C03;TENOR=Os07t0661800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	27926158	27926214	.	+	.	Parent=Os07t0661800-01
Chr07	irgsp1_rep	CDS	27926215	27926419	.	+	0	Parent=Os07t0661800-01
Chr07	irgsp1_rep	CDS	27926507	27926721	.	+	2	Parent=Os07t0661800-01
Chr07	irgsp1_rep	CDS	27927244	27927401	.	+	0	Parent=Os07t0661800-01
Chr07	irgsp1_rep	CDS	27928234	27928421	.	+	1	Parent=Os07t0661800-01
Chr07	irgsp1_rep	CDS	27928520	27928695	.	+	2	Parent=Os07t0661800-01
Chr07	irgsp1_rep	three_prime_UTR	27928696	27928780	.	+	.	Parent=Os07t0661800-01
Chr07	irgsp1_rep	three_prime_UTR	27928931	27929079	.	+	.	Parent=Os07t0661800-01
Chr07	irgsp1_rep	three_prime_UTR	27929161	27929313	.	+	.	Parent=Os07t0661800-01
Chr07	irgsp1_rep	three_prime_UTR	27929418	27929980	.	+	.	Parent=Os07t0661800-01
Chr07	irgsp1_rep	mRNA	27929713	27932769	.	-	.	ID=Os07t0661900-01;Name=Os07t0661900-01;Locus_id=Os07g0661900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK069221 (DDBJ%2C Best hit);ORF_evidence=B9FUP7 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J023018E21;Expression=AK069221;TENOR=Os07t0661900-01;KEGG=Os07t0661900-01
Chr07	irgsp1_rep	five_prime_UTR	27931865	27932769	.	-	.	Parent=Os07t0661900-01
Chr07	irgsp1_rep	CDS	27931418	27931864	.	-	0	Parent=Os07t0661900-01
Chr07	irgsp1_rep	CDS	27930051	27930926	.	-	0	Parent=Os07t0661900-01
Chr07	irgsp1_rep	three_prime_UTR	27929713	27930050	.	-	.	Parent=Os07t0661900-01
Chr07	irgsp1_rep	mRNA	27936364	27937218	.	-	.	ID=Os07t0662200-00;Name=Os07t0662200-00;Locus_id=Os07g0662200;Note=Conserved hypothetical protein.;Transcript_evidence=EU957461 (DDBJ);ORF_evidence=Q6ZJX2 (UniProt);TENOR=Os07t0662200-00
Chr07	irgsp1_rep	CDS	27936769	27937218	.	-	0	Parent=Os07t0662200-00
Chr07	irgsp1_rep	three_prime_UTR	27936364	27936768	.	-	.	Parent=Os07t0662200-00
Chr07	irgsp1_rep	mRNA	27941759	27944162	.	+	.	ID=Os07t0662500-01;Name=Os07t0662500-01;Locus_id=Os07g0662500;CGSNL Gene Symbol=EEF1B';CGSNL Gene Name=EUKARYOTIC ELONGATION FACTOR 1-BETA';Oryzabase Gene Symbol Synonym(s)=eEF-1beta'%2C EF-1beta';Oryzabase Gene Name Synonym(s)=elongation factor 1 beta';Note=Similar to Elongation factor 1-beta' (EF-1-beta').;Transcript_evidence=AK121942 (DDBJ%2C Best hit),AK061761 (DDBJ%2C Best hit),AK098892 (DDBJ%2C Best hit);ORF_evidence=A2YPM1 (UniProt);GO=Biological Process: translational elongation (GO:0006414),Cellular Component: eukaryotic translation elongation factor 1 complex (GO:0005853),Molecular Function: translation elongation factor activity (GO:0003746);InterPro=Translation elongation factor EF1B%2C beta/delta chains%2C conserved site (IPR001326),Glutathione S-transferase%2C C-terminal-like (IPR010987),Translation elongation factor EF1B%2C beta/delta subunit%2C guanine nucleotide exchange (IPR014038),Translation elongation factor EF1B/ribosomal protein S6 (IPR014717);NIAS_FLcDNA=J033107E20,001-039-B01,J013001M09;Oryzabase=14427;TENOR=Os07t0662500-01
Chr07	irgsp1_rep	five_prime_UTR	27941759	27941853	.	+	.	Parent=Os07t0662500-01
Chr07	irgsp1_rep	CDS	27941854	27941939	.	+	0	Parent=Os07t0662500-01
Chr07	irgsp1_rep	CDS	27942334	27942450	.	+	1	Parent=Os07t0662500-01
Chr07	irgsp1_rep	CDS	27942543	27942624	.	+	1	Parent=Os07t0662500-01
Chr07	irgsp1_rep	CDS	27943289	27943400	.	+	0	Parent=Os07t0662500-01
Chr07	irgsp1_rep	CDS	27943537	27943650	.	+	2	Parent=Os07t0662500-01
Chr07	irgsp1_rep	CDS	27943742	27943905	.	+	2	Parent=Os07t0662500-01
Chr07	irgsp1_rep	three_prime_UTR	27943906	27944162	.	+	.	Parent=Os07t0662500-01
Chr07	irgsp1_rep	mRNA	27945172	27950563	.	-	.	ID=Os07t0662550-00;Name=Os07t0662550-00;Locus_id=Os07g0662550;Note=Hypothetical protein.;Transcript_evidence=tplb0021n11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0662550-00
Chr07	irgsp1_rep	five_prime_UTR	27949685	27950563	.	-	.	Parent=Os07t0662550-00
Chr07	irgsp1_rep	CDS	27949055	27949684	.	-	0	Parent=Os07t0662550-00
Chr07	irgsp1_rep	three_prime_UTR	27948957	27949054	.	-	.	Parent=Os07t0662550-00
Chr07	irgsp1_rep	three_prime_UTR	27945172	27945255	.	-	.	Parent=Os07t0662550-00
Chr07	irgsp1_rep	mRNA	27945178	27948097	.	+	.	ID=Os07t0662600-01;Name=Os07t0662600-01;Locus_id=Os07g0662600;Note=RNA recognition motif%2C RNP-1 domain containing protein.;Transcript_evidence=AK103399 (DDBJ%2C Best hit);ORF_evidence=B4FC44 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033127O12;Expression=AK103399;TENOR=Os07t0662600-01;KEGG=Os07t0662600-01
Chr07	irgsp1_rep	five_prime_UTR	27945178	27945287	.	+	.	Parent=Os07t0662600-01
Chr07	irgsp1_rep	CDS	27945288	27945543	.	+	0	Parent=Os07t0662600-01
Chr07	irgsp1_rep	CDS	27946328	27946379	.	+	2	Parent=Os07t0662600-01
Chr07	irgsp1_rep	CDS	27946650	27946717	.	+	1	Parent=Os07t0662600-01
Chr07	irgsp1_rep	CDS	27946900	27946989	.	+	2	Parent=Os07t0662600-01
Chr07	irgsp1_rep	CDS	27947082	27947212	.	+	2	Parent=Os07t0662600-01
Chr07	irgsp1_rep	CDS	27947492	27947626	.	+	0	Parent=Os07t0662600-01
Chr07	irgsp1_rep	CDS	27947703	27947720	.	+	0	Parent=Os07t0662600-01
Chr07	irgsp1_rep	three_prime_UTR	27947721	27948097	.	+	.	Parent=Os07t0662600-01
Chr07	irgsp1_rep	mRNA	27948928	27950606	.	+	.	ID=Os07t0662700-01;Name=Os07t0662700-01;Locus_id=Os07g0662700;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK106855 (DDBJ%2C Best hit);ORF_evidence=A2YPM3 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=002-118-B07;Expression=AK106855;TENOR=Os07t0662700-01;KEGG=Os07t0662700-01
Chr07	irgsp1_rep	five_prime_UTR	27948928	27948929	.	+	.	Parent=Os07t0662700-01
Chr07	irgsp1_rep	CDS	27948930	27950564	.	+	0	Parent=Os07t0662700-01
Chr07	irgsp1_rep	three_prime_UTR	27950565	27950606	.	+	.	Parent=Os07t0662700-01
Chr07	irgsp1_rep	mRNA	27950941	27957461	.	-	.	ID=Os07t0662800-01;Name=Os07t0662800-01;Locus_id=Os07g0662800;Note=Similar to tryptophan/tyrosine permease family protein.;Transcript_evidence=AK066067 (DDBJ%2C Best hit);ORF_evidence=NP_197451.2 (RefSeq);InterPro=Tryptophan/tyrosine permease (IPR018227);NIAS_FLcDNA=J013055M05;TENOR=Os07t0662800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	27957438	27957461	.	-	.	Parent=Os07t0662800-01
Chr07	irgsp1_rep	CDS	27957176	27957437	.	-	0	Parent=Os07t0662800-01
Chr07	irgsp1_rep	CDS	27957035	27957075	.	-	2	Parent=Os07t0662800-01
Chr07	irgsp1_rep	CDS	27956638	27956748	.	-	0	Parent=Os07t0662800-01
Chr07	irgsp1_rep	three_prime_UTR	27956576	27956637	.	-	.	Parent=Os07t0662800-01
Chr07	irgsp1_rep	three_prime_UTR	27956321	27956395	.	-	.	Parent=Os07t0662800-01
Chr07	irgsp1_rep	three_prime_UTR	27954180	27954229	.	-	.	Parent=Os07t0662800-01
Chr07	irgsp1_rep	three_prime_UTR	27953910	27953999	.	-	.	Parent=Os07t0662800-01
Chr07	irgsp1_rep	three_prime_UTR	27953535	27953591	.	-	.	Parent=Os07t0662800-01
Chr07	irgsp1_rep	three_prime_UTR	27953322	27953391	.	-	.	Parent=Os07t0662800-01
Chr07	irgsp1_rep	three_prime_UTR	27952714	27952815	.	-	.	Parent=Os07t0662800-01
Chr07	irgsp1_rep	three_prime_UTR	27952588	27952640	.	-	.	Parent=Os07t0662800-01
Chr07	irgsp1_rep	three_prime_UTR	27952200	27952347	.	-	.	Parent=Os07t0662800-01
Chr07	irgsp1_rep	three_prime_UTR	27952034	27952118	.	-	.	Parent=Os07t0662800-01
Chr07	irgsp1_rep	three_prime_UTR	27950941	27951846	.	-	.	Parent=Os07t0662800-01
Chr07	irgsp1_rep	mRNA	27960583	27968015	.	+	.	ID=Os07t0662900-01;Name=Os07t0662900-01;Locus_id=Os07g0662900;CGSNL Gene Symbol=DPE2;CGSNL Gene Name=DISPROPORTIONATING ENZYME 2;Oryzabase Gene Symbol Synonym(s)=OsDPE2%2C OsDpe2%2C Dpe2;Oryzabase Gene Name Synonym(s)=disproportionating enzyme 2;Note=Similar to 4-alpha-glucanotransferase (EC 2.4.1.25).;Transcript_evidence=AK067082 (DDBJ%2C Best hit);ORF_evidence=Q69Q02 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: 4-alpha-glucanotransferase activity (GO:0004134),Molecular Function: carbohydrate binding (GO:0030246),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C carbohydrate-binding (IPR002044),Glycoside hydrolase%2C family 77 (IPR003385),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Immunoglobulin-like fold (IPR013783),Carbohydrate-binding-like fold (IPR013784),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J013096E12;Oryzabase=21328;Expression=AK067082;TENOR=Os07t0662900-01;KEGG=Os07t0662900-01 (EC:2.4.1.25)
Chr07	irgsp1_rep	five_prime_UTR	27960583	27960828	.	+	.	Parent=Os07t0662900-01
Chr07	irgsp1_rep	five_prime_UTR	27961272	27961273	.	+	.	Parent=Os07t0662900-01
Chr07	irgsp1_rep	CDS	27961274	27961618	.	+	0	Parent=Os07t0662900-01
Chr07	irgsp1_rep	CDS	27961781	27961898	.	+	0	Parent=Os07t0662900-01
Chr07	irgsp1_rep	CDS	27962232	27962284	.	+	2	Parent=Os07t0662900-01
Chr07	irgsp1_rep	CDS	27962387	27962514	.	+	0	Parent=Os07t0662900-01
Chr07	irgsp1_rep	CDS	27962633	27962762	.	+	1	Parent=Os07t0662900-01
Chr07	irgsp1_rep	CDS	27963026	27963222	.	+	0	Parent=Os07t0662900-01
Chr07	irgsp1_rep	CDS	27963308	27963386	.	+	1	Parent=Os07t0662900-01
Chr07	irgsp1_rep	CDS	27963533	27963571	.	+	0	Parent=Os07t0662900-01
Chr07	irgsp1_rep	CDS	27963781	27963900	.	+	0	Parent=Os07t0662900-01
Chr07	irgsp1_rep	CDS	27963996	27964097	.	+	0	Parent=Os07t0662900-01
Chr07	irgsp1_rep	CDS	27964233	27964316	.	+	0	Parent=Os07t0662900-01
Chr07	irgsp1_rep	CDS	27964411	27964653	.	+	0	Parent=Os07t0662900-01
Chr07	irgsp1_rep	CDS	27964735	27964860	.	+	0	Parent=Os07t0662900-01
Chr07	irgsp1_rep	CDS	27964944	27965018	.	+	0	Parent=Os07t0662900-01
Chr07	irgsp1_rep	CDS	27965113	27965184	.	+	0	Parent=Os07t0662900-01
Chr07	irgsp1_rep	CDS	27965386	27965505	.	+	0	Parent=Os07t0662900-01
Chr07	irgsp1_rep	CDS	27965654	27965751	.	+	0	Parent=Os07t0662900-01
Chr07	irgsp1_rep	CDS	27966222	27966381	.	+	1	Parent=Os07t0662900-01
Chr07	irgsp1_rep	CDS	27966461	27966559	.	+	0	Parent=Os07t0662900-01
Chr07	irgsp1_rep	CDS	27966701	27966898	.	+	0	Parent=Os07t0662900-01
Chr07	irgsp1_rep	CDS	27966983	27967076	.	+	0	Parent=Os07t0662900-01
Chr07	irgsp1_rep	CDS	27967611	27967771	.	+	2	Parent=Os07t0662900-01
Chr07	irgsp1_rep	three_prime_UTR	27967772	27968015	.	+	.	Parent=Os07t0662900-01
Chr07	irgsp1_rep	mRNA	27969862	27970340	.	-	.	ID=Os07t0663000-00;Name=Os07t0663000-00;Locus_id=Os07g0663000;Note=Hypothetical protein.;Transcript_evidence=EU971620 (DDBJ);ORF_evidence=GeneMark;TENOR=Os07t0663000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	27969864	27970340	.	-	0	Parent=Os07t0663000-00
Chr07	irgsp1_rep	three_prime_UTR	27969862	27969863	.	-	.	Parent=Os07t0663000-00
Chr07	irgsp1_rep	mRNA	27979895	27980707	.	+	.	ID=Os07t0663200-01;Name=Os07t0663200-01;Locus_id=Os07g0663200;Note=Hypothetical gene.;Transcript_evidence=AK111333 (DDBJ%2C Best hit),AK288567 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-181-E06,J090048A17;Expression=AK111333;TENOR=Os07t0663200-01;KEGG=Os07t0663200-01
Chr07	irgsp1_rep	five_prime_UTR	27979895	27979995	.	+	.	Parent=Os07t0663200-01
Chr07	irgsp1_rep	CDS	27979996	27980226	.	+	0	Parent=Os07t0663200-01
Chr07	irgsp1_rep	three_prime_UTR	27980227	27980707	.	+	.	Parent=Os07t0663200-01
Chr07	irgsp1_rep	mRNA	27983248	27987956	.	-	.	ID=Os07t0663300-01;Name=Os07t0663300-01;Locus_id=Os07g0663300;Note=Similar to RNA-binding protein BRUNOL5 (Fragment).;Transcript_evidence=AK100642 (DDBJ%2C Best hit);ORF_evidence=Q69Q05 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023110I18;Expression=AK100642;TENOR=Os07t0663300-01;KEGG=Os07t0663300-01
Chr07	irgsp1_rep	five_prime_UTR	27987714	27987956	.	-	.	Parent=Os07t0663300-01
Chr07	irgsp1_rep	CDS	27987554	27987713	.	-	0	Parent=Os07t0663300-01
Chr07	irgsp1_rep	CDS	27987386	27987468	.	-	2	Parent=Os07t0663300-01
Chr07	irgsp1_rep	CDS	27986488	27986539	.	-	0	Parent=Os07t0663300-01
Chr07	irgsp1_rep	CDS	27986200	27986331	.	-	2	Parent=Os07t0663300-01
Chr07	irgsp1_rep	CDS	27986018	27986106	.	-	2	Parent=Os07t0663300-01
Chr07	irgsp1_rep	CDS	27985678	27985863	.	-	0	Parent=Os07t0663300-01
Chr07	irgsp1_rep	CDS	27983956	27984283	.	-	0	Parent=Os07t0663300-01
Chr07	irgsp1_rep	CDS	27983722	27983865	.	-	2	Parent=Os07t0663300-01
Chr07	irgsp1_rep	CDS	27983526	27983635	.	-	2	Parent=Os07t0663300-01
Chr07	irgsp1_rep	three_prime_UTR	27983248	27983525	.	-	.	Parent=Os07t0663300-01
Chr07	irgsp1_rep	mRNA	27983224	27987556	.	-	.	ID=Os07t0663300-02;Name=Os07t0663300-02;Locus_id=Os07g0663300;Note=Hypothetical conserved gene.;Transcript_evidence=AK070340 (DDBJ%2C Best hit);ORF_evidence=B9FUQ1 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023047K23;Expression=AK070340;TENOR=Os07t0663300-02;KEGG=Os07t0663300-02
Chr07	irgsp1_rep	five_prime_UTR	27987521	27987556	.	-	.	Parent=Os07t0663300-02
Chr07	irgsp1_rep	CDS	27987386	27987520	.	-	0	Parent=Os07t0663300-02
Chr07	irgsp1_rep	CDS	27986488	27986539	.	-	0	Parent=Os07t0663300-02
Chr07	irgsp1_rep	CDS	27986200	27986331	.	-	2	Parent=Os07t0663300-02
Chr07	irgsp1_rep	CDS	27986018	27986106	.	-	2	Parent=Os07t0663300-02
Chr07	irgsp1_rep	CDS	27985678	27985863	.	-	0	Parent=Os07t0663300-02
Chr07	irgsp1_rep	CDS	27984768	27984983	.	-	0	Parent=Os07t0663300-02
Chr07	irgsp1_rep	CDS	27983956	27984283	.	-	0	Parent=Os07t0663300-02
Chr07	irgsp1_rep	CDS	27983722	27983865	.	-	2	Parent=Os07t0663300-02
Chr07	irgsp1_rep	CDS	27983526	27983635	.	-	2	Parent=Os07t0663300-02
Chr07	irgsp1_rep	three_prime_UTR	27983224	27983525	.	-	.	Parent=Os07t0663300-02
Chr07	irgsp1_rep	mRNA	27991215	27992591	.	+	.	ID=Os07t0663500-00;Name=Os07t0663500-00;Locus_id=Os07g0663500;Note=Similar to Short-chain dehydrogenase/reductase (Fragment).;Transcript_evidence=ab initio prediction;ORF_evidence=Q2EFH9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);TENOR=Os07t0663500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	27991215	27991243	.	+	0	Parent=Os07t0663500-00
Chr07	irgsp1_rep	CDS	27991392	27991451	.	+	1	Parent=Os07t0663500-00
Chr07	irgsp1_rep	CDS	27991586	27991642	.	+	1	Parent=Os07t0663500-00
Chr07	irgsp1_rep	CDS	27991787	27992591	.	+	1	Parent=Os07t0663500-00
Chr07	irgsp1_rep	mRNA	27995955	27997226	.	+	.	ID=Os07t0663600-01;Name=Os07t0663600-01;Locus_id=Os07g0663600;Oryzabase Gene Symbol Synonym(s)=OsSDR110C-MI2%2C SDR110C-MI2;Oryzabase Gene Name Synonym(s)=short-chain alcohol dehydrogenase/reductase 110C-MI2%2C OsSDR110C family member MI2;Note=Short-chain dehydrogenase/reductase SDR domain containing protein.;Transcript_evidence=AK107157 (DDBJ%2C Best hit);ORF_evidence=Q2EFH9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);NIAS_FLcDNA=002-124-E09;Oryzabase=21336;Expression=AK107157;TENOR=Os07t0663600-01;KEGG=Os07t0663600-01
Chr07	irgsp1_rep	five_prime_UTR	27995955	27995981	.	+	.	Parent=Os07t0663600-01
Chr07	irgsp1_rep	CDS	27995982	27996013	.	+	0	Parent=Os07t0663600-01
Chr07	irgsp1_rep	CDS	27996140	27996208	.	+	1	Parent=Os07t0663600-01
Chr07	irgsp1_rep	CDS	27996322	27997129	.	+	1	Parent=Os07t0663600-01
Chr07	irgsp1_rep	three_prime_UTR	27997130	27997226	.	+	.	Parent=Os07t0663600-01
Chr07	irgsp1_rep	mRNA	27996223	27996585	.	-	.	ID=Os07t0663650-00;Name=Os07t0663650-00;Locus_id=Os07g0663650;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os07t0663650-00
Chr07	irgsp1_rep	CDS	27996223	27996585	.	-	0	Parent=Os07t0663650-00
Chr07	irgsp1_rep	mRNA	28002587	28004412	.	+	.	ID=Os07t0663700-01;Name=Os07t0663700-01;Locus_id=Os07g0663700;Oryzabase Gene Symbol Synonym(s)=OsSDR110C-MI3%2C SDR110C-MI3;Oryzabase Gene Name Synonym(s)=short-chain alcohol dehydrogenase/reductase 110C-MI3%2C OsSDR110C family member MI3;Note=Similar to Oxidoreductase%2C short chain dehydrogenase/reductase family protein%2C expressed.;Transcript_evidence=AK107619 (DDBJ%2C Best hit),AK070585 (DDBJ%2C Best hit),AK104614 (DDBJ%2C Best hit);ORF_evidence=Q2QUJ9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Polyketide synthase/Fatty acid synthase%2C KR (IPR020842);NIAS_FLcDNA=002-131-D02,J023062B22,006-309-E02;Oryzabase=21334;TENOR=Os07t0663700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	28002587	28002668	.	+	.	Parent=Os07t0663700-01
Chr07	irgsp1_rep	CDS	28002669	28002709	.	+	0	Parent=Os07t0663700-01
Chr07	irgsp1_rep	CDS	28002814	28002897	.	+	1	Parent=Os07t0663700-01
Chr07	irgsp1_rep	CDS	28003039	28003828	.	+	1	Parent=Os07t0663700-01
Chr07	irgsp1_rep	three_prime_UTR	28003829	28004412	.	+	.	Parent=Os07t0663700-01
Chr07	irgsp1_rep	mRNA	28003036	28003613	.	-	.	ID=Os07t0663750-00;Name=Os07t0663750-00;Locus_id=Os07g0663750;Note=Hypothetical protein.;Transcript_evidence=EU954997 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0663750-00
Chr07	irgsp1_rep	five_prime_UTR	28003613	28003613	.	-	.	Parent=Os07t0663750-00
Chr07	irgsp1_rep	CDS	28003036	28003612	.	-	0	Parent=Os07t0663750-00
Chr07	irgsp1_rep	mRNA	28004961	28006171	.	+	.	ID=Os07t0663800-01;Name=Os07t0663800-01;Locus_id=Os07g0663800;Oryzabase Gene Symbol Synonym(s)=OsSDR110C-MI4%2C SDR110C-MI4;Oryzabase Gene Name Synonym(s)=short-chain alcohol dehydrogenase/reductase 110C-MI4%2C OsSDR110C family member MI4;Note=Similar to Oxidoreductase%2C short chain dehydrogenase/reductase family protein%2C expressed.;Transcript_evidence=AK061856 (DDBJ%2C Best hit);ORF_evidence=Q2QUJ9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-040-G03;Oryzabase=21337;TENOR=Os07t0663800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	28004961	28005003	.	+	.	Parent=Os07t0663800-01
Chr07	irgsp1_rep	CDS	28005004	28005068	.	+	0	Parent=Os07t0663800-01
Chr07	irgsp1_rep	CDS	28005248	28006037	.	+	1	Parent=Os07t0663800-01
Chr07	irgsp1_rep	three_prime_UTR	28006038	28006171	.	+	.	Parent=Os07t0663800-01
Chr07	irgsp1_rep	mRNA	28013811	28014713	.	+	.	ID=Os07t0663900-00;Name=Os07t0663900-00;Locus_id=Os07g0663900;Note=Similar to Oxidoreductase%2C short chain dehydrogenase/reductase family protein%2C expressed.;Transcript_evidence=AK359130 (DDBJ);ORF_evidence=Q2QUJ9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Polyketide synthase/Fatty acid synthase%2C KR (IPR020842);TENOR=Os07t0663900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	28013811	28014683	.	+	0	Parent=Os07t0663900-00
Chr07	irgsp1_rep	three_prime_UTR	28014684	28014713	.	+	.	Parent=Os07t0663900-00
Chr07	irgsp1_rep	mRNA	28020795	28021694	.	+	.	ID=Os07t0664000-00;Name=Os07t0664000-00;Locus_id=Os07g0664000;Note=Similar to Oxidoreductase%2C short chain dehydrogenase/reductase family protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QUJ9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);TENOR=Os07t0664000-00;KEGG=Os07t0664000-00
Chr07	irgsp1_rep	CDS	28020795	28021694	.	+	0	Parent=Os07t0664000-00
Chr07	irgsp1_rep	mRNA	28040621	28042269	.	+	.	ID=Os07t0664100-00;Name=Os07t0664100-00;Locus_id=Os07g0664100;Note=Zinc finger%2C SWIM-type domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FUQ6 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);TENOR=Os07t0664100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	28040621	28041064	.	+	0	Parent=Os07t0664100-00
Chr07	irgsp1_rep	CDS	28041137	28041401	.	+	0	Parent=Os07t0664100-00
Chr07	irgsp1_rep	CDS	28041476	28042269	.	+	2	Parent=Os07t0664100-00
Chr07	irgsp1_rep	mRNA	28043196	28043812	.	+	.	ID=Os07t0664150-00;Name=Os07t0664150-00;Locus_id=Os07g0664150;Note=Similar to Oxidoreductase%2C short chain dehydrogenase/reductase family protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QUJ9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);TENOR=Os07t0664150-00
Chr07	irgsp1_rep	CDS	28043196	28043206	.	+	0	Parent=Os07t0664150-00
Chr07	irgsp1_rep	CDS	28043428	28043812	.	+	1	Parent=Os07t0664150-00
Chr07	irgsp1_rep	mRNA	28044948	28046299	.	+	.	ID=Os07t0664200-01;Name=Os07t0664200-01;Locus_id=Os07g0664200;Note=Short-chain dehydrogenase/reductase SDR domain containing protein.;Transcript_evidence=AK109088 (DDBJ%2C Best hit);ORF_evidence=Q2QUJ9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=002-154-H12;Expression=AK109088;TENOR=Os07t0664200-01;KEGG=Os07t0664200-01
Chr07	irgsp1_rep	five_prime_UTR	28044948	28044969	.	+	.	Parent=Os07t0664200-01
Chr07	irgsp1_rep	CDS	28044970	28045001	.	+	0	Parent=Os07t0664200-01
Chr07	irgsp1_rep	CDS	28045090	28045146	.	+	1	Parent=Os07t0664200-01
Chr07	irgsp1_rep	CDS	28045219	28046017	.	+	1	Parent=Os07t0664200-01
Chr07	irgsp1_rep	three_prime_UTR	28046018	28046299	.	+	.	Parent=Os07t0664200-01
Chr07	irgsp1_rep	mRNA	28053814	28056606	.	+	.	ID=Os07t0664400-01;Name=Os07t0664400-01;Locus_id=Os07g0664400;Oryzabase Gene Name Synonym(s)=plant short chain slcohol dehydrogenase;Note=Short-chain dehydrogenase/reductase SDR domain containing protein.;Transcript_evidence=AK241729 (DDBJ%2C Best hit);ORF_evidence=Q2EFH5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J065199L10;Oryzabase=16034;TENOR=Os07t0664400-01;KEGG=Os07t0664400-01
Chr07	irgsp1_rep	five_prime_UTR	28053814	28053877	.	+	.	Parent=Os07t0664400-01
Chr07	irgsp1_rep	CDS	28053878	28053906	.	+	0	Parent=Os07t0664400-01
Chr07	irgsp1_rep	CDS	28054793	28054867	.	+	1	Parent=Os07t0664400-01
Chr07	irgsp1_rep	CDS	28055583	28056375	.	+	1	Parent=Os07t0664400-01
Chr07	irgsp1_rep	three_prime_UTR	28056376	28056606	.	+	.	Parent=Os07t0664400-01
Chr07	irgsp1_rep	mRNA	28057781	28059098	.	+	.	ID=Os07t0664500-01;Name=Os07t0664500-01;Locus_id=Os07g0664500;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK240874 (DDBJ%2C Best hit);ORF_evidence=Q2EFH8 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Polyketide synthase/Fatty acid synthase%2C KR (IPR020842),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);NIAS_FLcDNA=J065025K09;TENOR=Os07t0664500-01;KEGG=Os07t0664500-01
Chr07	irgsp1_rep	five_prime_UTR	28057781	28057834	.	+	.	Parent=Os07t0664500-01
Chr07	irgsp1_rep	CDS	28057835	28057866	.	+	0	Parent=Os07t0664500-01
Chr07	irgsp1_rep	CDS	28057978	28058869	.	+	1	Parent=Os07t0664500-01
Chr07	irgsp1_rep	three_prime_UTR	28058870	28059098	.	+	.	Parent=Os07t0664500-01
Chr07	irgsp1_rep	mRNA	28061378	28062582	.	+	.	ID=Os07t0664600-01;Name=Os07t0664600-01;Locus_id=Os07g0664600;Oryzabase Gene Symbol Synonym(s)=RMP8;Oryzabase Gene Name Synonym(s)=rice microspore-preferred 8;Note=Glucose/ribitol dehydrogenase family protein.;Transcript_evidence=AK109386 (DDBJ%2C Best hit);ORF_evidence=Q2EFH9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=006-211-C09;Oryzabase=21549;Expression=AK109386;TENOR=Os07t0664600-01;KEGG=Os07t0664600-01
Chr07	irgsp1_rep	five_prime_UTR	28061378	28061443	.	+	.	Parent=Os07t0664600-01
Chr07	irgsp1_rep	CDS	28061444	28061475	.	+	0	Parent=Os07t0664600-01
Chr07	irgsp1_rep	CDS	28061557	28062154	.	+	1	Parent=Os07t0664600-01
Chr07	irgsp1_rep	three_prime_UTR	28062155	28062582	.	+	.	Parent=Os07t0664600-01
Chr07	irgsp1_rep	mRNA	28062530	28063141	.	+	.	ID=Os07t0664600-02;Name=Os07t0664600-02;Locus_id=Os07g0664600;Oryzabase Gene Symbol Synonym(s)=RMP8;Oryzabase Gene Name Synonym(s)=rice microspore-preferred 8;Note=Similar to predicted protein.;Transcript_evidence=AK105211 (DDBJ%2C Best hit);ORF_evidence=B9FUQ8 (UniProt);GO=Biological Process: enterobactin biosynthetic process (GO:0009239),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: 2%2C3-dihydro-2%2C3-dihydroxybenzoate dehydrogenase activity (GO:0008667);InterPro=2%2C3-dihydro-2%2C3-dihydroxybenzoate dehydrogenase (IPR003560),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-109-B08;Oryzabase=21549;Expression=AK105211;TENOR=Os07t0664600-02;KEGG=Os07t0664600-02
Chr07	irgsp1_rep	five_prime_UTR	28062530	28062642	.	+	.	Parent=Os07t0664600-02
Chr07	irgsp1_rep	CDS	28062643	28062978	.	+	0	Parent=Os07t0664600-02
Chr07	irgsp1_rep	three_prime_UTR	28062979	28063141	.	+	.	Parent=Os07t0664600-02
Chr07	irgsp1_rep	mRNA	28065887	28071321	.	+	.	ID=Os07t0664900-00;Name=Os07t0664900-00;Locus_id=Os07g0664900;Note=Similar to Short-chain dehydrogenase/reductase (Fragment).;Transcript_evidence=AK334048 (DDBJ);ORF_evidence=Q2EFH7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);TENOR=Os07t0664900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	28065887	28066366	.	+	0	Parent=Os07t0664900-00
Chr07	irgsp1_rep	CDS	28070515	28071321	.	+	0	Parent=Os07t0664900-00
Chr07	irgsp1_rep	mRNA	28073863	28074868	.	+	.	ID=Os07t0665000-00;Name=Os07t0665000-00;Locus_id=Os07g0665000;Note=Similar to Short-chain dehydrogenase/reductase (Fragment).;Transcript_evidence=ab initio prediction;ORF_evidence=Q2EFH6 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Polyketide synthase/Fatty acid synthase%2C KR (IPR020842),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);TENOR=Os07t0665000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	28073863	28073897	.	+	0	Parent=Os07t0665000-00
Chr07	irgsp1_rep	CDS	28073983	28074868	.	+	1	Parent=Os07t0665000-00
Chr07	irgsp1_rep	mRNA	28073865	28074895	.	-	.	ID=Os07t0665100-01;Name=Os07t0665100-01;Locus_id=Os07g0665100;Note=Hypothetical protein.;Transcript_evidence=AK061088 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=006-206-G08;Expression=AK061088;TENOR=Os07t0665100-01;KEGG=Os07t0665100-01
Chr07	irgsp1_rep	five_prime_UTR	28074646	28074895	.	-	.	Parent=Os07t0665100-01
Chr07	irgsp1_rep	CDS	28074307	28074645	.	-	0	Parent=Os07t0665100-01
Chr07	irgsp1_rep	three_prime_UTR	28073865	28074306	.	-	.	Parent=Os07t0665100-01
Chr07	irgsp1_rep	mRNA	28075600	28077583	.	-	.	ID=Os07t0665200-01;Name=Os07t0665200-01;Locus_id=Os07g0665200;RAP-DB Gene Symbol Synonym(s)=CSD2;RAP-DB Gene Name Synonym(s)=Cu/Zn-Superoxidase Dismutase2;CGSNL Gene Symbol=SODCC2;CGSNL Gene Name=CYTOSOLIC SUPEROXIDASE DISMUTASE 2;Oryzabase Gene Symbol Synonym(s)=Cu/Zn-SOD%2C Cu/Zn- SOD%2C OsSODB%2C OsSOD3%2C SodCc2%2C Os SodCc2%2C sodB%2C OsSodB%2C RSODB%2C OssodCc1%2C OsCSD1.1%2C CSD1.1%2C OsCDS1%2C OsSOD3-CU/Zn%2C SOD3-CU/Zn%2C CuZnSOD2%2C Cu/ZnSOD2;Oryzabase Gene Name Synonym(s)=Cu/Zn-superoxide dismutase%2C superoxide dismutase B%2C copper/zinc-superoxide dismutase%2C "Cu%2C Zn superoxide dismutase"%2C cytosolic copper/zinc-superoxide dismutase 2%2C "Superoxide dismutase (Cu-Zn) 4%2C cytosolic"%2C Cu-dependent SOD 1.1;Note=Cu/Zn-Superoxidase Dismutase%2C Target of miR398b%2C Resistance to rice blast disease;Transcript_evidence=AK243377;ORF_evidence=P28757;GO=Biological Process: superoxide metabolic process (GO:0006801),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: superoxide dismutase activity (GO:0004784),Molecular Function: metal ion binding (GO:0046872);InterPro=Superoxide dismutase-like%2C copper/zinc binding domain superfamily (IPR036423),Superoxide dismutase%2C copper/zinc binding domain (IPR001424),Superoxide dismutase%2C copper/zinc%2C binding site (IPR018152);NIAS_FLcDNA=J100063A11;Manual Curation=February 18%2C 2019;Literature_PMID=30632163,1623183;Oryzabase=9457;TENOR=Os07t0665200-01
Chr07	irgsp1_rep	five_prime_UTR	28077530	28077583	.	-	.	Parent=Os07t0665200-01
Chr07	irgsp1_rep	five_prime_UTR	28076946	28076957	.	-	.	Parent=Os07t0665200-01
Chr07	irgsp1_rep	CDS	28076870	28076945	.	-	0	Parent=Os07t0665200-01
Chr07	irgsp1_rep	CDS	28076684	28076785	.	-	2	Parent=Os07t0665200-01
Chr07	irgsp1_rep	CDS	28076500	28076595	.	-	2	Parent=Os07t0665200-01
Chr07	irgsp1_rep	CDS	28076306	28076337	.	-	2	Parent=Os07t0665200-01
Chr07	irgsp1_rep	CDS	28076124	28076199	.	-	0	Parent=Os07t0665200-01
Chr07	irgsp1_rep	CDS	28075934	28075987	.	-	2	Parent=Os07t0665200-01
Chr07	irgsp1_rep	CDS	28075775	28075797	.	-	2	Parent=Os07t0665200-01
Chr07	irgsp1_rep	three_prime_UTR	28075600	28075774	.	-	.	Parent=Os07t0665200-01
Chr07	irgsp1_rep	mRNA	28078190	28079343	.	+	.	ID=Os07t0665250-00;Name=Os07t0665250-00;Locus_id=Os07g0665250;Note=Hypothetical protein.;Transcript_evidence=tplb0046n07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0665250-00
Chr07	irgsp1_rep	five_prime_UTR	28078190	28078308	.	+	.	Parent=Os07t0665250-00
Chr07	irgsp1_rep	five_prime_UTR	28078660	28078811	.	+	.	Parent=Os07t0665250-00
Chr07	irgsp1_rep	CDS	28078812	28078922	.	+	0	Parent=Os07t0665250-00
Chr07	irgsp1_rep	CDS	28078989	28079077	.	+	0	Parent=Os07t0665250-00
Chr07	irgsp1_rep	CDS	28079169	28079181	.	+	1	Parent=Os07t0665250-00
Chr07	irgsp1_rep	three_prime_UTR	28079182	28079343	.	+	.	Parent=Os07t0665250-00
Chr07	irgsp1_rep	mRNA	28078653	28079792	.	-	.	ID=Os07t0665300-00;Name=Os07t0665300-00;Locus_id=Os07g0665300;Note=Similar to Superoxide dismutase.;Transcript_evidence=ab initio prediction;ORF_evidence=B8B5M4 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Peptidase cysteine/serine%2C trypsin-like (IPR009003);TENOR=Os07t0665300-00;KEGG=Os07t0665300-00
Chr07	irgsp1_rep	CDS	28079762	28079792	.	-	0	Parent=Os07t0665300-00
Chr07	irgsp1_rep	CDS	28079572	28079640	.	-	2	Parent=Os07t0665300-00
Chr07	irgsp1_rep	CDS	28079435	28079500	.	-	2	Parent=Os07t0665300-00
Chr07	irgsp1_rep	CDS	28079224	28079343	.	-	2	Parent=Os07t0665300-00
Chr07	irgsp1_rep	CDS	28079006	28079133	.	-	2	Parent=Os07t0665300-00
Chr07	irgsp1_rep	CDS	28078653	28078934	.	-	0	Parent=Os07t0665300-00
Chr07	irgsp1_rep	mRNA	28101292	28109515	.	-	.	ID=Os07t0665700-01;Name=Os07t0665700-01;Locus_id=Os07g0665700;Note=Peptidase%2C trypsin-like serine and cysteine domain containing protein.;Transcript_evidence=AK065322 (DDBJ%2C Best hit);ORF_evidence=B8B5M4 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Peptidase cysteine/serine%2C trypsin-like (IPR009003);NIAS_FLcDNA=J013002P16;Expression=AK065322;TENOR=Os07t0665700-01;KEGG=Os07t0665700-01
Chr07	irgsp1_rep	five_prime_UTR	28109379	28109515	.	-	.	Parent=Os07t0665700-01
Chr07	irgsp1_rep	CDS	28109320	28109378	.	-	0	Parent=Os07t0665700-01
Chr07	irgsp1_rep	CDS	28107635	28107723	.	-	1	Parent=Os07t0665700-01
Chr07	irgsp1_rep	CDS	28107410	28107547	.	-	2	Parent=Os07t0665700-01
Chr07	irgsp1_rep	CDS	28107207	28107334	.	-	2	Parent=Os07t0665700-01
Chr07	irgsp1_rep	CDS	28106838	28107113	.	-	0	Parent=Os07t0665700-01
Chr07	irgsp1_rep	CDS	28106497	28106627	.	-	0	Parent=Os07t0665700-01
Chr07	irgsp1_rep	CDS	28103675	28103796	.	-	1	Parent=Os07t0665700-01
Chr07	irgsp1_rep	CDS	28103369	28103428	.	-	2	Parent=Os07t0665700-01
Chr07	irgsp1_rep	CDS	28103177	28103248	.	-	2	Parent=Os07t0665700-01
Chr07	irgsp1_rep	CDS	28103040	28103105	.	-	2	Parent=Os07t0665700-01
Chr07	irgsp1_rep	CDS	28102829	28102948	.	-	2	Parent=Os07t0665700-01
Chr07	irgsp1_rep	CDS	28102618	28102745	.	-	2	Parent=Os07t0665700-01
Chr07	irgsp1_rep	CDS	28102274	28102546	.	-	0	Parent=Os07t0665700-01
Chr07	irgsp1_rep	CDS	28101788	28101918	.	-	0	Parent=Os07t0665700-01
Chr07	irgsp1_rep	CDS	28101622	28101657	.	-	1	Parent=Os07t0665700-01
Chr07	irgsp1_rep	CDS	28101449	28101533	.	-	1	Parent=Os07t0665700-01
Chr07	irgsp1_rep	three_prime_UTR	28101292	28101448	.	-	.	Parent=Os07t0665700-01
Chr07	irgsp1_rep	mRNA	28101819	28107515	.	+	.	ID=Os07t0665750-00;Name=Os07t0665750-00;Locus_id=Os07g0665750;Note=Hypothetical protein.;Transcript_evidence=tplb0059c15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0665750-00
Chr07	irgsp1_rep	five_prime_UTR	28101819	28101934	.	+	.	Parent=Os07t0665750-00
Chr07	irgsp1_rep	five_prime_UTR	28102291	28102423	.	+	.	Parent=Os07t0665750-00
Chr07	irgsp1_rep	CDS	28102424	28102534	.	+	0	Parent=Os07t0665750-00
Chr07	irgsp1_rep	CDS	28102601	28102736	.	+	0	Parent=Os07t0665750-00
Chr07	irgsp1_rep	CDS	28102810	28102838	.	+	2	Parent=Os07t0665750-00
Chr07	irgsp1_rep	three_prime_UTR	28102839	28103004	.	+	.	Parent=Os07t0665750-00
Chr07	irgsp1_rep	three_prime_UTR	28106479	28106629	.	+	.	Parent=Os07t0665750-00
Chr07	irgsp1_rep	three_prime_UTR	28106840	28107115	.	+	.	Parent=Os07t0665750-00
Chr07	irgsp1_rep	three_prime_UTR	28107293	28107515	.	+	.	Parent=Os07t0665750-00
Chr07	irgsp1_rep	mRNA	28118088	28125354	.	+	.	ID=Os07t0665900-01;Name=Os07t0665900-01;Locus_id=Os07g0665900;Note=Peptidase%2C trypsin-like serine and cysteine domain containing protein.;Transcript_evidence=AK121371 (DDBJ%2C Best hit);ORF_evidence=A3BN64 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Peptidase cysteine/serine%2C trypsin-like (IPR009003);NIAS_FLcDNA=J023126G14;Expression=AK121371;TENOR=Os07t0665900-01;KEGG=Os07t0665900-01
Chr07	irgsp1_rep	five_prime_UTR	28118088	28118266	.	+	.	Parent=Os07t0665900-01
Chr07	irgsp1_rep	five_prime_UTR	28120693	28120734	.	+	.	Parent=Os07t0665900-01
Chr07	irgsp1_rep	CDS	28120735	28120743	.	+	0	Parent=Os07t0665900-01
Chr07	irgsp1_rep	CDS	28123358	28123755	.	+	0	Parent=Os07t0665900-01
Chr07	irgsp1_rep	CDS	28124347	28124611	.	+	1	Parent=Os07t0665900-01
Chr07	irgsp1_rep	CDS	28124680	28124753	.	+	0	Parent=Os07t0665900-01
Chr07	irgsp1_rep	CDS	28124826	28124925	.	+	1	Parent=Os07t0665900-01
Chr07	irgsp1_rep	three_prime_UTR	28124926	28125354	.	+	.	Parent=Os07t0665900-01
Chr07	irgsp1_rep	mRNA	28135841	28140653	.	+	.	ID=Os07t0666300-01;Name=Os07t0666300-01;Locus_id=Os07g0666300;Note=Hypothetical conserved gene.;Transcript_evidence=AK240919 (DDBJ%2C Best hit);ORF_evidence=B9FUR3 (UniProt);NIAS_FLcDNA=J065038A20;TENOR=Os07t0666300-01;KEGG=Os07t0666300-01
Chr07	irgsp1_rep	five_prime_UTR	28135841	28135889	.	+	.	Parent=Os07t0666300-01
Chr07	irgsp1_rep	five_prime_UTR	28137014	28137072	.	+	.	Parent=Os07t0666300-01
Chr07	irgsp1_rep	CDS	28137073	28137081	.	+	0	Parent=Os07t0666300-01
Chr07	irgsp1_rep	CDS	28137218	28137634	.	+	0	Parent=Os07t0666300-01
Chr07	irgsp1_rep	three_prime_UTR	28137635	28137894	.	+	.	Parent=Os07t0666300-01
Chr07	irgsp1_rep	three_prime_UTR	28137969	28138037	.	+	.	Parent=Os07t0666300-01
Chr07	irgsp1_rep	three_prime_UTR	28140217	28140653	.	+	.	Parent=Os07t0666300-01
Chr07	irgsp1_rep	mRNA	28140745	28143487	.	-	.	ID=Os07t0666400-00;Name=Os07t0666400-00;Locus_id=Os07g0666400;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FUR4 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Peptidase cysteine/serine%2C trypsin-like (IPR009003);TENOR=Os07t0666400-00;KEGG=Os07t0666400-00
Chr07	irgsp1_rep	CDS	28143063	28143487	.	-	0	Parent=Os07t0666400-00
Chr07	irgsp1_rep	CDS	28142740	28142950	.	-	1	Parent=Os07t0666400-00
Chr07	irgsp1_rep	CDS	28140745	28140786	.	-	0	Parent=Os07t0666400-00
Chr07	irgsp1_rep	mRNA	28146499	28149601	.	-	.	ID=Os07t0666600-01;Name=Os07t0666600-01;Locus_id=Os07g0666600;Note=KIP1-like domain containing protein.;Transcript_evidence=AK068545 (DDBJ%2C Best hit);ORF_evidence=A2YPP9 (UniProt);InterPro=KIP1-like (IPR011684);NIAS_FLcDNA=J013156C01;Expression=AK068545;TENOR=Os07t0666600-01;KEGG=Os07t0666600-01
Chr07	irgsp1_rep	five_prime_UTR	28149565	28149601	.	-	.	Parent=Os07t0666600-01
Chr07	irgsp1_rep	five_prime_UTR	28148554	28148590	.	-	.	Parent=Os07t0666600-01
Chr07	irgsp1_rep	CDS	28148466	28148553	.	-	0	Parent=Os07t0666600-01
Chr07	irgsp1_rep	CDS	28146814	28147610	.	-	2	Parent=Os07t0666600-01
Chr07	irgsp1_rep	three_prime_UTR	28146499	28146813	.	-	.	Parent=Os07t0666600-01
Chr07	irgsp1_rep	mRNA	28146805	28147613	.	+	.	ID=Os07t0666750-00;Name=Os07t0666750-00;Locus_id=Os07g0666750;Note=Hypothetical gene.;Transcript_evidence=EU951594 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0666750-00;KEGG=Os07t0666750-00
Chr07	irgsp1_rep	five_prime_UTR	28146805	28146943	.	+	.	Parent=Os07t0666750-00
Chr07	irgsp1_rep	CDS	28146944	28147201	.	+	0	Parent=Os07t0666750-00
Chr07	irgsp1_rep	three_prime_UTR	28147202	28147613	.	+	.	Parent=Os07t0666750-00
Chr07	irgsp1_rep	mRNA	28164441	28169283	.	+	.	ID=Os07t0666900-01;Name=Os07t0666900-01;Locus_id=Os07g0666900;RAP-DB Gene Symbol Synonym(s)=NHX1%2C OsNHX1;RAP-DB Gene Name Synonym(s)=NA+/H+ ANTIPORTER%2C Na+/H+ antiporter%2C NHX-type antiporter 1;CGSNL Gene Symbol=NHX1;CGSNL Gene Name=NA+/H+ ANTIPORTER;Oryzabase Gene Symbol Synonym(s)=OsNHX1;Oryzabase Gene Name Synonym(s)=Na+/H+ antiporter%2C NHX-type antiporter 1;Note=Vacuolar Na+/H+ antiporter%2C Salt tolerance;Transcript_evidence=AB021878 (DDBJ);ORF_evidence=Q9SXJ8 (UniProt);GO=Biological Process: cation transport (GO:0006812),Biological Process: sodium ion transport (GO:0006814),Biological Process: regulation of pH (GO:0006885),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: solute:hydrogen antiporter activity (GO:0015299),Molecular Function: sodium:hydrogen antiporter activity (GO:0015385);InterPro=Na+/H+ exchanger (IPR004709),Cation/H+ exchanger (IPR006153),Cation/H+ exchanger%2C CPA1 family (IPR018422);Manual Curation=July 22%2C 2010;Literature_PMID=10395929,14988485;Oryzabase=3071;TENOR=Os07t0666900-01
Chr07	irgsp1_rep	five_prime_UTR	28164441	28164736	.	+	.	Parent=Os07t0666900-01
Chr07	irgsp1_rep	CDS	28164737	28164907	.	+	0	Parent=Os07t0666900-01
Chr07	irgsp1_rep	CDS	28165010	28165128	.	+	0	Parent=Os07t0666900-01
Chr07	irgsp1_rep	CDS	28166013	28166110	.	+	1	Parent=Os07t0666900-01
Chr07	irgsp1_rep	CDS	28166233	28166292	.	+	2	Parent=Os07t0666900-01
Chr07	irgsp1_rep	CDS	28166391	28166437	.	+	2	Parent=Os07t0666900-01
Chr07	irgsp1_rep	CDS	28166518	28166712	.	+	0	Parent=Os07t0666900-01
Chr07	irgsp1_rep	CDS	28166815	28166861	.	+	0	Parent=Os07t0666900-01
Chr07	irgsp1_rep	CDS	28166942	28167008	.	+	1	Parent=Os07t0666900-01
Chr07	irgsp1_rep	CDS	28167100	28167200	.	+	0	Parent=Os07t0666900-01
Chr07	irgsp1_rep	CDS	28167304	28167405	.	+	1	Parent=Os07t0666900-01
Chr07	irgsp1_rep	CDS	28167483	28167621	.	+	1	Parent=Os07t0666900-01
Chr07	irgsp1_rep	CDS	28167699	28167761	.	+	0	Parent=Os07t0666900-01
Chr07	irgsp1_rep	CDS	28167902	28167985	.	+	0	Parent=Os07t0666900-01
Chr07	irgsp1_rep	CDS	28168560	28168874	.	+	0	Parent=Os07t0666900-01
Chr07	irgsp1_rep	three_prime_UTR	28168875	28169283	.	+	.	Parent=Os07t0666900-01
Chr07	irgsp1_rep	mRNA	28164424	28169307	.	+	.	ID=Os07t0666900-02;Name=Os07t0666900-02;Locus_id=Os07g0666900;CGSNL Gene Symbol=NHX1;CGSNL Gene Name=NA+/H+ ANTIPORTER;Oryzabase Gene Symbol Synonym(s)=OsNHX1;Oryzabase Gene Name Synonym(s)=Na+/H+ antiporter%2C NHX-type antiporter 1;Note=Similar to Sodium/hydrogen exchanger.;Transcript_evidence=AK064004 (DDBJ%2C Best hit),AK099332 (DDBJ%2C Best hit);ORF_evidence=Q6VVA7 (UniProt);GO=Biological Process: cation transport (GO:0006812),Biological Process: sodium ion transport (GO:0006814),Biological Process: regulation of pH (GO:0006885),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: solute:hydrogen antiporter activity (GO:0015299),Molecular Function: sodium:hydrogen antiporter activity (GO:0015385);InterPro=Na+/H+ exchanger (IPR004709),Cation/H+ exchanger (IPR006153),Cation/H+ exchanger%2C CPA1 family (IPR018422);NIAS_FLcDNA=001-124-G02,J033022J03;Oryzabase=3071;TENOR=Os07t0666900-02
Chr07	irgsp1_rep	five_prime_UTR	28164424	28164492	.	+	.	Parent=Os07t0666900-02
Chr07	irgsp1_rep	five_prime_UTR	28164620	28164736	.	+	.	Parent=Os07t0666900-02
Chr07	irgsp1_rep	CDS	28164737	28164907	.	+	0	Parent=Os07t0666900-02
Chr07	irgsp1_rep	CDS	28165010	28165128	.	+	0	Parent=Os07t0666900-02
Chr07	irgsp1_rep	CDS	28166013	28166110	.	+	1	Parent=Os07t0666900-02
Chr07	irgsp1_rep	CDS	28166233	28166292	.	+	2	Parent=Os07t0666900-02
Chr07	irgsp1_rep	CDS	28166391	28166437	.	+	2	Parent=Os07t0666900-02
Chr07	irgsp1_rep	CDS	28166518	28166712	.	+	0	Parent=Os07t0666900-02
Chr07	irgsp1_rep	CDS	28166815	28166861	.	+	0	Parent=Os07t0666900-02
Chr07	irgsp1_rep	CDS	28166942	28167008	.	+	1	Parent=Os07t0666900-02
Chr07	irgsp1_rep	CDS	28167100	28167200	.	+	0	Parent=Os07t0666900-02
Chr07	irgsp1_rep	CDS	28167304	28167405	.	+	1	Parent=Os07t0666900-02
Chr07	irgsp1_rep	CDS	28167483	28167621	.	+	1	Parent=Os07t0666900-02
Chr07	irgsp1_rep	CDS	28167699	28167761	.	+	0	Parent=Os07t0666900-02
Chr07	irgsp1_rep	CDS	28167902	28167985	.	+	0	Parent=Os07t0666900-02
Chr07	irgsp1_rep	CDS	28168560	28168874	.	+	0	Parent=Os07t0666900-02
Chr07	irgsp1_rep	three_prime_UTR	28168875	28169307	.	+	.	Parent=Os07t0666900-02
Chr07	irgsp1_rep	mRNA	28173219	28176820	.	+	.	ID=Os07t0667000-01;Name=Os07t0667000-01;Locus_id=Os07g0667000;Oryzabase Gene Symbol Synonym(s)=OsTLP7%2C OsTLP11%2C OsFbox398%2C Os_F0421;Oryzabase Gene Name Synonym(s)=tubby-like protein 7%2C tubby-like protein 11%2C F-box protein 398;Note=Similar to Tubby-like protein 3.;Transcript_evidence=AK060587 (DDBJ%2C Best hit);ORF_evidence=Q8H485 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Tubby%2C C-terminal (IPR000007),F-box domain%2C cyclin-like (IPR001810),Tubby%2C C-terminal%2C conserved site (IPR018066);NIAS_FLcDNA=001-024-B07;Oryzabase=14709;Expression=AK060587;TENOR=Os07t0667000-01;KEGG=Os07t0667000-01
Chr07	irgsp1_rep	five_prime_UTR	28173219	28173464	.	+	.	Parent=Os07t0667000-01
Chr07	irgsp1_rep	CDS	28173465	28173818	.	+	0	Parent=Os07t0667000-01
Chr07	irgsp1_rep	CDS	28174956	28175043	.	+	0	Parent=Os07t0667000-01
Chr07	irgsp1_rep	CDS	28175136	28175265	.	+	2	Parent=Os07t0667000-01
Chr07	irgsp1_rep	CDS	28175362	28175541	.	+	1	Parent=Os07t0667000-01
Chr07	irgsp1_rep	CDS	28175870	28176338	.	+	1	Parent=Os07t0667000-01
Chr07	irgsp1_rep	three_prime_UTR	28176339	28176820	.	+	.	Parent=Os07t0667000-01
Chr07	irgsp1_rep	mRNA	28173274	28176611	.	+	.	ID=Os07t0667000-02;Name=Os07t0667000-02;Locus_id=Os07g0667000;Oryzabase Gene Symbol Synonym(s)=OsTLP7%2C OsTLP11%2C OsFbox398%2C Os_F0421;Oryzabase Gene Name Synonym(s)=tubby-like protein 7%2C tubby-like protein 11%2C F-box protein 398;Note=Similar to Tubby-like protein 3.;Transcript_evidence=AK071159 (DDBJ%2C Best hit);ORF_evidence=Q8H485 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Tubby%2C C-terminal (IPR000007),F-box domain%2C cyclin-like (IPR001810),Tubby%2C C-terminal%2C conserved site (IPR018066);NIAS_FLcDNA=J023078O15;Oryzabase=14709;Expression=AK071159;TENOR=Os07t0667000-02;KEGG=Os07t0667000-02
Chr07	irgsp1_rep	five_prime_UTR	28173274	28173464	.	+	.	Parent=Os07t0667000-02
Chr07	irgsp1_rep	CDS	28173465	28173818	.	+	0	Parent=Os07t0667000-02
Chr07	irgsp1_rep	CDS	28174956	28175043	.	+	0	Parent=Os07t0667000-02
Chr07	irgsp1_rep	CDS	28175136	28175265	.	+	2	Parent=Os07t0667000-02
Chr07	irgsp1_rep	CDS	28175362	28175541	.	+	1	Parent=Os07t0667000-02
Chr07	irgsp1_rep	CDS	28175870	28176338	.	+	1	Parent=Os07t0667000-02
Chr07	irgsp1_rep	three_prime_UTR	28176339	28176611	.	+	.	Parent=Os07t0667000-02
Chr07	irgsp1_rep	mRNA	28178880	28181604	.	-	.	ID=Os07t0667100-00;Name=Os07t0667100-00;Locus_id=Os07g0667100;Oryzabase Gene Symbol Synonym(s)=OsSTA201;Oryzabase Gene Name Synonym(s)=beta-amylase;Note=Glycoside hydrolase%2C family 14 protein.;Transcript_evidence=BT068607 (DDBJ);ORF_evidence=D4PB89 (UniProt);GO=Biological Process: polysaccharide catabolic process (GO:0000272),Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: beta-amylase activity (GO:0016161),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 14 (IPR001554),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);Oryzabase=19478;TENOR=Os07t0667100-00;KEGG=Os07t0667100-00
Chr07	irgsp1_rep	five_prime_UTR	28181595	28181604	.	-	.	Parent=Os07t0667100-00
Chr07	irgsp1_rep	CDS	28181376	28181594	.	-	0	Parent=Os07t0667100-00
Chr07	irgsp1_rep	CDS	28180801	28181295	.	-	0	Parent=Os07t0667100-00
Chr07	irgsp1_rep	CDS	28180609	28180718	.	-	0	Parent=Os07t0667100-00
Chr07	irgsp1_rep	CDS	28178880	28179642	.	-	1	Parent=Os07t0667100-00
Chr07	irgsp1_rep	mRNA	28184879	28187843	.	-	.	ID=Os07t0667300-01;Name=Os07t0667300-01;Locus_id=Os07g0667300;RAP-DB Gene Symbol Synonym(s)=OsCOL13%2C OsBBX23%2C OsCCT27%2C OsR;RAP-DB Gene Name Synonym(s)=B-box-containing protein 23%2C CCT domain-containing gene 27%2C "CCT (CO%2C CO-LIKE and TOC1) domain protein 27"%2C CCT domain protein 27;Oryzabase Gene Symbol Synonym(s)=OsBBX23%2C OsCCT27%2C BBX23%2C CCT27%2C OsR%2C OsCOL13%2C COL13;Oryzabase Gene Name Synonym(s)=B-box-containing protein 23%2C CCT domain-containing gene 27%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 27%2C CCT domain protein 27%2C CONSTANS-like 13%2C CO-like 13;Note=CONSTANS-like transcriptional activator%2C Negative regulation of flowering;Transcript_evidence=AK120101;ORF_evidence=Q0D3T5;GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Cellular Component: intracellular (GO:0005622);InterPro=B-box-type zinc finger (IPR000315),CCT domain (IPR010402);NIAS_FLcDNA=J013022K23;Manual Curation=July 25%2C 2016;Literature_PMID=27405463;Oryzabase=11653;Expression=AK120101;TENOR=Os07t0667300-01;KEGG=Os07t0667300-01
Chr07	irgsp1_rep	five_prime_UTR	28187763	28187843	.	-	.	Parent=Os07t0667300-01
Chr07	irgsp1_rep	CDS	28187211	28187762	.	-	0	Parent=Os07t0667300-01
Chr07	irgsp1_rep	CDS	28186500	28186697	.	-	0	Parent=Os07t0667300-01
Chr07	irgsp1_rep	CDS	28185596	28185900	.	-	0	Parent=Os07t0667300-01
Chr07	irgsp1_rep	CDS	28185202	28185289	.	-	1	Parent=Os07t0667300-01
Chr07	irgsp1_rep	three_prime_UTR	28184879	28185201	.	-	.	Parent=Os07t0667300-01
Chr07	irgsp1_rep	mRNA	28185196	28187434	.	+	.	ID=Os07t0667350-00;Name=Os07t0667350-00;Locus_id=Os07g0667350;Note=Hypothetical gene.;Transcript_evidence=BT085426 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0667350-00
Chr07	irgsp1_rep	five_prime_UTR	28185196	28185365	.	+	.	Parent=Os07t0667350-00
Chr07	irgsp1_rep	five_prime_UTR	28185584	28186062	.	+	.	Parent=Os07t0667350-00
Chr07	irgsp1_rep	five_prime_UTR	28186467	28186759	.	+	.	Parent=Os07t0667350-00
Chr07	irgsp1_rep	CDS	28186760	28186770	.	+	0	Parent=Os07t0667350-00
Chr07	irgsp1_rep	CDS	28187165	28187434	.	+	1	Parent=Os07t0667350-00
Chr07	irgsp1_rep	mRNA	28189882	28192794	.	-	.	ID=Os07t0667400-01;Name=Os07t0667400-01;Locus_id=Os07g0667400;Note=Methyltransferase type 12 domain containing protein.;Transcript_evidence=AK073297 (DDBJ%2C Best hit);ORF_evidence=B8B5W1 (UniProt);NIAS_FLcDNA=J033027J22;Expression=AK073297;TENOR=Os07t0667400-01;KEGG=Os07t0667400-01
Chr07	irgsp1_rep	five_prime_UTR	28192703	28192794	.	-	.	Parent=Os07t0667400-01
Chr07	irgsp1_rep	CDS	28192341	28192702	.	-	0	Parent=Os07t0667400-01
Chr07	irgsp1_rep	CDS	28191492	28192146	.	-	1	Parent=Os07t0667400-01
Chr07	irgsp1_rep	three_prime_UTR	28191281	28191491	.	-	.	Parent=Os07t0667400-01
Chr07	irgsp1_rep	three_prime_UTR	28189882	28190165	.	-	.	Parent=Os07t0667400-01
Chr07	irgsp1_rep	mRNA	28201698	28202106	.	+	.	ID=Os07t0667800-00;Name=Os07t0667800-00;Locus_id=Os07g0667800;Note=Conserved hypothetical protein.;Transcript_evidence=EU946507 (DDBJ);ORF_evidence=Q8W5Q4 (UniProt);TENOR=Os07t0667800-00
Chr07	irgsp1_rep	five_prime_UTR	28201698	28201706	.	+	.	Parent=Os07t0667800-00
Chr07	irgsp1_rep	CDS	28201707	28201958	.	+	0	Parent=Os07t0667800-00
Chr07	irgsp1_rep	three_prime_UTR	28201959	28202106	.	+	.	Parent=Os07t0667800-00
Chr07	irgsp1_rep	mRNA	28206595	28209063	.	-	.	ID=Os07t0667900-00;Name=Os07t0667900-00;Locus_id=Os07g0667900;Note=Hypothetical protein.;Transcript_evidence=tplb0040h06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0667900-00
Chr07	irgsp1_rep	five_prime_UTR	28208947	28209063	.	-	.	Parent=Os07t0667900-00
Chr07	irgsp1_rep	five_prime_UTR	28208243	28208443	.	-	.	Parent=Os07t0667900-00
Chr07	irgsp1_rep	five_prime_UTR	28207414	28207577	.	-	.	Parent=Os07t0667900-00
Chr07	irgsp1_rep	CDS	28207231	28207413	.	-	0	Parent=Os07t0667900-00
Chr07	irgsp1_rep	CDS	28206894	28207155	.	-	0	Parent=Os07t0667900-00
Chr07	irgsp1_rep	CDS	28206595	28206797	.	-	2	Parent=Os07t0667900-00
Chr07	irgsp1_rep	mRNA	28208976	28209746	.	+	.	ID=Os07t0668000-00;Name=Os07t0668000-00;Locus_id=Os07g0668000;Oryzabase Gene Symbol Synonym(s)=Orysa%3BCKL6;Oryzabase Gene Name Synonym(s)=CDK-LIKE 6%2C cyclin-dependent kinase-like 6;Note=Similar to cDNA clone:J033024L12%2C full insert sequence.;Transcript_evidence=CT836044 (DDBJ%2C Best hit);ORF_evidence=Q7F0M8 (UniProt);Oryzabase=13304;TENOR=Os07t0668000-00;KEGG=Os07t0668000-00
Chr07	irgsp1_rep	five_prime_UTR	28208976	28208977	.	+	.	Parent=Os07t0668000-00
Chr07	irgsp1_rep	CDS	28208978	28209069	.	+	0	Parent=Os07t0668000-00
Chr07	irgsp1_rep	CDS	28209343	28209346	.	+	1	Parent=Os07t0668000-00
Chr07	irgsp1_rep	three_prime_UTR	28209347	28209746	.	+	.	Parent=Os07t0668000-00
Chr07	irgsp1_rep	mRNA	28210626	28213920	.	-	.	ID=Os07t0668100-01;Name=Os07t0668100-01;Locus_id=Os07g0668100;Note=Conserved hypothetical protein.;Transcript_evidence=AK106702 (DDBJ%2C Best hit);ORF_evidence=B9FUS0 (UniProt);NIAS_FLcDNA=002-114-E04;TENOR=Os07t0668100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	28213914	28213920	.	-	.	Parent=Os07t0668100-01
Chr07	irgsp1_rep	CDS	28213477	28213913	.	-	0	Parent=Os07t0668100-01
Chr07	irgsp1_rep	CDS	28212797	28213384	.	-	1	Parent=Os07t0668100-01
Chr07	irgsp1_rep	CDS	28212254	28212362	.	-	1	Parent=Os07t0668100-01
Chr07	irgsp1_rep	three_prime_UTR	28212225	28212253	.	-	.	Parent=Os07t0668100-01
Chr07	irgsp1_rep	three_prime_UTR	28211432	28212144	.	-	.	Parent=Os07t0668100-01
Chr07	irgsp1_rep	three_prime_UTR	28211228	28211307	.	-	.	Parent=Os07t0668100-01
Chr07	irgsp1_rep	three_prime_UTR	28210626	28211051	.	-	.	Parent=Os07t0668100-01
Chr07	irgsp1_rep	mRNA	28215144	28221958	.	-	.	ID=Os07t0668200-01;Name=Os07t0668200-01;Locus_id=Os07g0668200;Note=Similar to adenyl cyclase.;Transcript_evidence=AK101682 (DDBJ%2C Best hit),AK059051 (DDBJ%2C Best hit),AK102839 (DDBJ%2C Best hit);ORF_evidence=NP_001149561.1 (RefSeq);NIAS_FLcDNA=J033058L09,001-021-E09,J033109M09;TENOR=Os07t0668200-01
Chr07	irgsp1_rep	five_prime_UTR	28221883	28221958	.	-	.	Parent=Os07t0668200-01
Chr07	irgsp1_rep	CDS	28221672	28221882	.	-	0	Parent=Os07t0668200-01
Chr07	irgsp1_rep	CDS	28220340	28220453	.	-	2	Parent=Os07t0668200-01
Chr07	irgsp1_rep	CDS	28218589	28218740	.	-	2	Parent=Os07t0668200-01
Chr07	irgsp1_rep	CDS	28217956	28218049	.	-	0	Parent=Os07t0668200-01
Chr07	irgsp1_rep	CDS	28217620	28217690	.	-	2	Parent=Os07t0668200-01
Chr07	irgsp1_rep	CDS	28217441	28217547	.	-	0	Parent=Os07t0668200-01
Chr07	irgsp1_rep	CDS	28217190	28217311	.	-	1	Parent=Os07t0668200-01
Chr07	irgsp1_rep	CDS	28216728	28216816	.	-	2	Parent=Os07t0668200-01
Chr07	irgsp1_rep	CDS	28216261	28216320	.	-	0	Parent=Os07t0668200-01
Chr07	irgsp1_rep	CDS	28215852	28215956	.	-	0	Parent=Os07t0668200-01
Chr07	irgsp1_rep	CDS	28215395	28215511	.	-	0	Parent=Os07t0668200-01
Chr07	irgsp1_rep	three_prime_UTR	28215144	28215394	.	-	.	Parent=Os07t0668200-01
Chr07	irgsp1_rep	mRNA	28214197	28217486	.	-	.	ID=Os07t0668200-02;Name=Os07t0668200-02;Locus_id=Os07g0668200;Note=Similar to adenyl cyclase.;Transcript_evidence=AK064146 (DDBJ%2C Best hit);ORF_evidence=NP_001149561.1 (RefSeq);NIAS_FLcDNA=002-103-C06;Expression=AK064146;TENOR=Os07t0668200-02;KEGG=Os07t0668200-02
Chr07	irgsp1_rep	five_prime_UTR	28217485	28217486	.	-	.	Parent=Os07t0668200-02
Chr07	irgsp1_rep	CDS	28217441	28217484	.	-	0	Parent=Os07t0668200-02
Chr07	irgsp1_rep	CDS	28217190	28217311	.	-	1	Parent=Os07t0668200-02
Chr07	irgsp1_rep	CDS	28216728	28216816	.	-	2	Parent=Os07t0668200-02
Chr07	irgsp1_rep	CDS	28216261	28216320	.	-	0	Parent=Os07t0668200-02
Chr07	irgsp1_rep	CDS	28215852	28215956	.	-	0	Parent=Os07t0668200-02
Chr07	irgsp1_rep	CDS	28215395	28215511	.	-	0	Parent=Os07t0668200-02
Chr07	irgsp1_rep	three_prime_UTR	28215158	28215394	.	-	.	Parent=Os07t0668200-02
Chr07	irgsp1_rep	three_prime_UTR	28214197	28214864	.	-	.	Parent=Os07t0668200-02
Chr07	irgsp1_rep	mRNA	28215244	28221994	.	+	.	ID=Os07t0668251-00;Name=Os07t0668251-00;Locus_id=Os07g0668251;Note=Non-protein coding transcript.;Transcript_evidence=tplb0041h02 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os07t0668251-00
Chr07	irgsp1_rep	exon	28215244	28215488	.	+	.	Parent=Os07t0668251-00
Chr07	irgsp1_rep	exon	28215830	28215949	.	+	.	Parent=Os07t0668251-00
Chr07	irgsp1_rep	exon	28216253	28216319	.	+	.	Parent=Os07t0668251-00
Chr07	irgsp1_rep	exon	28216727	28216811	.	+	.	Parent=Os07t0668251-00
Chr07	irgsp1_rep	exon	28217183	28217310	.	+	.	Parent=Os07t0668251-00
Chr07	irgsp1_rep	exon	28217440	28217543	.	+	.	Parent=Os07t0668251-00
Chr07	irgsp1_rep	exon	28217623	28217688	.	+	.	Parent=Os07t0668251-00
Chr07	irgsp1_rep	exon	28217954	28218045	.	+	.	Parent=Os07t0668251-00
Chr07	irgsp1_rep	exon	28218575	28218730	.	+	.	Parent=Os07t0668251-00
Chr07	irgsp1_rep	exon	28220330	28220448	.	+	.	Parent=Os07t0668251-00
Chr07	irgsp1_rep	exon	28221679	28221994	.	+	.	Parent=Os07t0668251-00
Chr07	irgsp1_rep	mRNA	28222585	28224898	.	-	.	ID=Os07t0668300-01;Name=Os07t0668300-01;Locus_id=Os07g0668300;CGSNL Gene Symbol=GELP94;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 94;Oryzabase Gene Symbol Synonym(s)=OsGELP94%2C OsGELP94a%2C OsGELP94b;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 94;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK061122 (DDBJ%2C Best hit);ORF_evidence=NP_001148291.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=006-207-G04;Oryzabase=11044;Expression=AK061122;TENOR=Os07t0668300-01;KEGG=Os07t0668300-01
Chr07	irgsp1_rep	five_prime_UTR	28224776	28224898	.	-	.	Parent=Os07t0668300-01
Chr07	irgsp1_rep	CDS	28224481	28224775	.	-	0	Parent=Os07t0668300-01
Chr07	irgsp1_rep	CDS	28224259	28224389	.	-	2	Parent=Os07t0668300-01
Chr07	irgsp1_rep	CDS	28223887	28224135	.	-	0	Parent=Os07t0668300-01
Chr07	irgsp1_rep	CDS	28223450	28223452	.	-	0	Parent=Os07t0668300-01
Chr07	irgsp1_rep	three_prime_UTR	28222585	28223449	.	-	.	Parent=Os07t0668300-01
Chr07	irgsp1_rep	mRNA	28228570	28231389	.	+	.	ID=Os07t0668500-00;Name=Os07t0668500-00;Locus_id=Os07g0668500;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=EU955462 (DDBJ);ORF_evidence=Q7F0M5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Gnk2-homologous domain (IPR002902),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);TENOR=Os07t0668500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	28228570	28229383	.	+	0	Parent=Os07t0668500-00
Chr07	irgsp1_rep	CDS	28229585	28229749	.	+	2	Parent=Os07t0668500-00
Chr07	irgsp1_rep	CDS	28229870	28230045	.	+	2	Parent=Os07t0668500-00
Chr07	irgsp1_rep	CDS	28230202	28230415	.	+	0	Parent=Os07t0668500-00
Chr07	irgsp1_rep	CDS	28230716	28230771	.	+	2	Parent=Os07t0668500-00
Chr07	irgsp1_rep	three_prime_UTR	28230772	28231078	.	+	.	Parent=Os07t0668500-00
Chr07	irgsp1_rep	three_prime_UTR	28231288	28231389	.	+	.	Parent=Os07t0668500-00
Chr07	irgsp1_rep	mRNA	28233256	28234565	.	-	.	ID=Os07t0668600-01;Name=Os07t0668600-01;Locus_id=Os07g0668600;Oryzabase Gene Symbol Synonym(s)=OsGZF1;Oryzabase Gene Name Synonym(s)=GluB-1-binding Zinc Finger 1;Note=Zinc finger%2C CCCH-type domain containing protein.;Transcript_evidence=AK108315 (DDBJ%2C Best hit);ORF_evidence=Q8H3R4;GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=002-141-G08;Manual Curation=September 24%2C 2015;Oryzabase=15452;TENOR=Os07t0668600-01;KEGG=Os07t0668600-01
Chr07	irgsp1_rep	five_prime_UTR	28234442	28234565	.	-	.	Parent=Os07t0668600-01
Chr07	irgsp1_rep	CDS	28233599	28234441	.	-	0	Parent=Os07t0668600-01
Chr07	irgsp1_rep	three_prime_UTR	28233256	28233514	.	-	.	Parent=Os07t0668600-01
Chr07	irgsp1_rep	mRNA	28233249	28234681	.	-	.	ID=Os07t0668600-02;Name=Os07t0668600-02;Locus_id=Os07g0668600;RAP-DB Gene Symbol Synonym(s)=OsGZF1;RAP-DB Gene Name Synonym(s)=GluB-1-binding Zinc Finger 1;Oryzabase Gene Symbol Synonym(s)=OsGZF1;Oryzabase Gene Name Synonym(s)=GluB-1-binding Zinc Finger 1;Note=CCCH type zinc finger protein%2C Regulation of the seed storage protein GluB-1;Transcript_evidence=KF289071;ORF_evidence=U3PTX7;GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C CCCH-type (IPR000571);Manual Curation=September 24%2C 2015;Literature_PMID=24282069;Oryzabase=15452
Chr07	irgsp1_rep	five_prime_UTR	28234580	28234681	.	-	.	Parent=Os07t0668600-02
Chr07	irgsp1_rep	five_prime_UTR	28234442	28234551	.	-	.	Parent=Os07t0668600-02
Chr07	irgsp1_rep	CDS	28233599	28234441	.	-	0	Parent=Os07t0668600-02
Chr07	irgsp1_rep	three_prime_UTR	28233249	28233514	.	-	.	Parent=Os07t0668600-02
Chr07	irgsp1_rep	mRNA	28240466	28245407	.	+	.	ID=Os07t0668700-01;Name=Os07t0668700-01;Locus_id=Os07g0668700;Note=Lipase%2C class 3 family protein.;Transcript_evidence=AK072772 (DDBJ%2C Best hit);ORF_evidence=B6U116 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921);NIAS_FLcDNA=J023136M13;Expression=AK072772;TENOR=Os07t0668700-01;KEGG=Os07t0668700-01
Chr07	irgsp1_rep	five_prime_UTR	28240466	28241388	.	+	.	Parent=Os07t0668700-01
Chr07	irgsp1_rep	CDS	28241389	28241494	.	+	0	Parent=Os07t0668700-01
Chr07	irgsp1_rep	CDS	28242793	28242872	.	+	2	Parent=Os07t0668700-01
Chr07	irgsp1_rep	CDS	28243064	28243129	.	+	0	Parent=Os07t0668700-01
Chr07	irgsp1_rep	CDS	28243380	28243427	.	+	0	Parent=Os07t0668700-01
Chr07	irgsp1_rep	CDS	28243546	28243613	.	+	0	Parent=Os07t0668700-01
Chr07	irgsp1_rep	CDS	28243686	28243758	.	+	1	Parent=Os07t0668700-01
Chr07	irgsp1_rep	CDS	28243863	28244024	.	+	0	Parent=Os07t0668700-01
Chr07	irgsp1_rep	CDS	28244199	28244393	.	+	0	Parent=Os07t0668700-01
Chr07	irgsp1_rep	CDS	28244693	28244769	.	+	0	Parent=Os07t0668700-01
Chr07	irgsp1_rep	CDS	28244859	28245060	.	+	1	Parent=Os07t0668700-01
Chr07	irgsp1_rep	three_prime_UTR	28245061	28245407	.	+	.	Parent=Os07t0668700-01
Chr07	irgsp1_rep	mRNA	28240545	28245410	.	+	.	ID=Os07t0668700-02;Name=Os07t0668700-02;Locus_id=Os07g0668700;Note=Lipase%2C class 3 family protein.;Transcript_evidence=AK108593 (DDBJ%2C Best hit);ORF_evidence=B6U116 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921);NIAS_FLcDNA=002-146-D06;Expression=AK108593;TENOR=Os07t0668700-02;KEGG=Os07t0668700-02
Chr07	irgsp1_rep	five_prime_UTR	28240545	28240795	.	+	.	Parent=Os07t0668700-02
Chr07	irgsp1_rep	five_prime_UTR	28241421	28241424	.	+	.	Parent=Os07t0668700-02
Chr07	irgsp1_rep	CDS	28241425	28241494	.	+	0	Parent=Os07t0668700-02
Chr07	irgsp1_rep	CDS	28242793	28242872	.	+	2	Parent=Os07t0668700-02
Chr07	irgsp1_rep	CDS	28243064	28243129	.	+	0	Parent=Os07t0668700-02
Chr07	irgsp1_rep	CDS	28243380	28243427	.	+	0	Parent=Os07t0668700-02
Chr07	irgsp1_rep	CDS	28243546	28243613	.	+	0	Parent=Os07t0668700-02
Chr07	irgsp1_rep	CDS	28243686	28243758	.	+	1	Parent=Os07t0668700-02
Chr07	irgsp1_rep	CDS	28243863	28244024	.	+	0	Parent=Os07t0668700-02
Chr07	irgsp1_rep	CDS	28244199	28244393	.	+	0	Parent=Os07t0668700-02
Chr07	irgsp1_rep	CDS	28244693	28244769	.	+	0	Parent=Os07t0668700-02
Chr07	irgsp1_rep	CDS	28244859	28245060	.	+	1	Parent=Os07t0668700-02
Chr07	irgsp1_rep	three_prime_UTR	28245061	28245410	.	+	.	Parent=Os07t0668700-02
Chr07	irgsp1_rep	mRNA	28247341	28249707	.	+	.	ID=Os07t0668800-01;Name=Os07t0668800-01;Locus_id=Os07g0668800;Note=BTB/POZ fold domain containing protein.;Transcript_evidence=AK103292 (DDBJ%2C Best hit),AK063550 (DDBJ%2C Best hit),AK105114 (DDBJ%2C Best hit);ORF_evidence=NP_850518.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ fold (IPR011333),BTB/POZ (IPR013069);NIAS_FLcDNA=J033125A06,001-117-D12,001-100-G09;Expression=AK103292;TENOR=Os07t0668800-01;KEGG=Os07t0668800-01
Chr07	irgsp1_rep	five_prime_UTR	28247341	28247439	.	+	.	Parent=Os07t0668800-01
Chr07	irgsp1_rep	CDS	28247440	28248759	.	+	0	Parent=Os07t0668800-01
Chr07	irgsp1_rep	three_prime_UTR	28248760	28249707	.	+	.	Parent=Os07t0668800-01
Chr07	irgsp1_rep	mRNA	28250047	28253655	.	-	.	ID=Os07t0668900-01;Name=Os07t0668900-01;Locus_id=Os07g0668900;CGSNL Gene Symbol=RLCK240;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 240;Oryzabase Gene Symbol Synonym(s)=OsRLCK240;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 240;Note=Similar to Serine/threonine-protein kinase PBS1 (EC 2.7.1.37) (AvrPphB susceptible protein 1).;Transcript_evidence=AK067054 (DDBJ%2C Best hit);ORF_evidence=NP_197362.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013092F03;Oryzabase=18932;Expression=AK067054;TENOR=Os07t0668900-01;KEGG=Os07t0668900-01 (EC:2.7.1.37)
Chr07	irgsp1_rep	five_prime_UTR	28253417	28253655	.	-	.	Parent=Os07t0668900-01
Chr07	irgsp1_rep	CDS	28253311	28253416	.	-	0	Parent=Os07t0668900-01
Chr07	irgsp1_rep	CDS	28252351	28252550	.	-	2	Parent=Os07t0668900-01
Chr07	irgsp1_rep	CDS	28252050	28252239	.	-	0	Parent=Os07t0668900-01
Chr07	irgsp1_rep	CDS	28251245	28251636	.	-	2	Parent=Os07t0668900-01
Chr07	irgsp1_rep	CDS	28250559	28251110	.	-	0	Parent=Os07t0668900-01
Chr07	irgsp1_rep	three_prime_UTR	28250047	28250558	.	-	.	Parent=Os07t0668900-01
Chr07	irgsp1_rep	mRNA	28250248	28253630	.	-	.	ID=Os07t0668900-02;Name=Os07t0668900-02;Locus_id=Os07g0668900;CGSNL Gene Symbol=RLCK240;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 240;Oryzabase Gene Symbol Synonym(s)=OsRLCK240;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 240;Note=Similar to Serine/threonine-protein kinase PBS1 (EC 2.7.1.37) (AvrPphB susceptible protein 1).;Transcript_evidence=AK119572 (DDBJ%2C Best hit);ORF_evidence=NP_197362.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=002-117-A11;Oryzabase=18932;Expression=AK119572;TENOR=Os07t0668900-02;KEGG=Os07t0668900-02 (EC:2.7.1.37)
Chr07	irgsp1_rep	five_prime_UTR	28253417	28253630	.	-	.	Parent=Os07t0668900-02
Chr07	irgsp1_rep	CDS	28253311	28253416	.	-	0	Parent=Os07t0668900-02
Chr07	irgsp1_rep	CDS	28252351	28252550	.	-	2	Parent=Os07t0668900-02
Chr07	irgsp1_rep	CDS	28252050	28252239	.	-	0	Parent=Os07t0668900-02
Chr07	irgsp1_rep	CDS	28251245	28251636	.	-	2	Parent=Os07t0668900-02
Chr07	irgsp1_rep	CDS	28250559	28251110	.	-	0	Parent=Os07t0668900-02
Chr07	irgsp1_rep	three_prime_UTR	28250248	28250558	.	-	.	Parent=Os07t0668900-02
Chr07	irgsp1_rep	mRNA	28258418	28260408	.	+	.	ID=Os07t0669000-01;Name=Os07t0669000-01;Locus_id=Os07g0669000;Note=Similar to Catalytic subunit of polymerase zeta.;Transcript_evidence=AK099431 (DDBJ%2C Best hit);ORF_evidence=B9FUS4 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J013012F23;Expression=AK099431;TENOR=Os07t0669000-01;KEGG=Os07t0669000-01 (EC:2.7.7.7)
Chr07	irgsp1_rep	five_prime_UTR	28258418	28258469	.	+	.	Parent=Os07t0669000-01
Chr07	irgsp1_rep	CDS	28258470	28258602	.	+	0	Parent=Os07t0669000-01
Chr07	irgsp1_rep	CDS	28258738	28258820	.	+	2	Parent=Os07t0669000-01
Chr07	irgsp1_rep	CDS	28259467	28259524	.	+	0	Parent=Os07t0669000-01
Chr07	irgsp1_rep	CDS	28260132	28260181	.	+	2	Parent=Os07t0669000-01
Chr07	irgsp1_rep	CDS	28260258	28260374	.	+	0	Parent=Os07t0669000-01
Chr07	irgsp1_rep	three_prime_UTR	28260375	28260408	.	+	.	Parent=Os07t0669000-01
Chr07	irgsp1_rep	mRNA	28272370	28276606	.	-	.	ID=Os07t0669100-01;Name=Os07t0669100-01;Locus_id=Os07g0669100;Oryzabase Gene Symbol Synonym(s)=OsXYLA1;Oryzabase Gene Name Synonym(s)=xylose isomerase;Note=Similar to Xylose isomerase (EC 5.3.1.5).;Transcript_evidence=AK072249 (DDBJ%2C Best hit);ORF_evidence=B9FUS5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: xylose isomerase activity (GO:0009045);InterPro=Xylose isomerase (IPR001998),Xylose isomerase%2C TIM barrel domain (IPR012307),Xylose isomerase-like%2C TIM barrel domain (IPR013022),Xylose isomerase%2C bacterial-type (IPR013452);NIAS_FLcDNA=J023001E09;Oryzabase=15295;Expression=AK072249;TENOR=Os07t0669100-01;KEGG=Os07t0669100-01 (EC:5.3.1.5)
Chr07	irgsp1_rep	five_prime_UTR	28276535	28276606	.	-	.	Parent=Os07t0669100-01
Chr07	irgsp1_rep	five_prime_UTR	28276275	28276307	.	-	.	Parent=Os07t0669100-01
Chr07	irgsp1_rep	CDS	28276215	28276274	.	-	0	Parent=Os07t0669100-01
Chr07	irgsp1_rep	CDS	28276011	28276121	.	-	0	Parent=Os07t0669100-01
Chr07	irgsp1_rep	CDS	28275734	28275808	.	-	0	Parent=Os07t0669100-01
Chr07	irgsp1_rep	CDS	28275506	28275635	.	-	0	Parent=Os07t0669100-01
Chr07	irgsp1_rep	CDS	28275320	28275411	.	-	2	Parent=Os07t0669100-01
Chr07	irgsp1_rep	CDS	28274849	28274899	.	-	0	Parent=Os07t0669100-01
Chr07	irgsp1_rep	CDS	28274679	28274758	.	-	0	Parent=Os07t0669100-01
Chr07	irgsp1_rep	CDS	28274545	28274599	.	-	1	Parent=Os07t0669100-01
Chr07	irgsp1_rep	CDS	28274365	28274466	.	-	0	Parent=Os07t0669100-01
Chr07	irgsp1_rep	CDS	28274209	28274260	.	-	0	Parent=Os07t0669100-01
Chr07	irgsp1_rep	CDS	28274084	28274129	.	-	2	Parent=Os07t0669100-01
Chr07	irgsp1_rep	CDS	28273954	28274009	.	-	1	Parent=Os07t0669100-01
Chr07	irgsp1_rep	CDS	28273721	28273772	.	-	2	Parent=Os07t0669100-01
Chr07	irgsp1_rep	CDS	28273565	28273644	.	-	1	Parent=Os07t0669100-01
Chr07	irgsp1_rep	CDS	28273380	28273450	.	-	2	Parent=Os07t0669100-01
Chr07	irgsp1_rep	CDS	28273246	28273286	.	-	0	Parent=Os07t0669100-01
Chr07	irgsp1_rep	CDS	28273046	28273145	.	-	1	Parent=Os07t0669100-01
Chr07	irgsp1_rep	CDS	28272896	28272967	.	-	0	Parent=Os07t0669100-01
Chr07	irgsp1_rep	CDS	28272728	28272805	.	-	0	Parent=Os07t0669100-01
Chr07	irgsp1_rep	CDS	28272584	28272619	.	-	0	Parent=Os07t0669100-01
Chr07	irgsp1_rep	three_prime_UTR	28272370	28272583	.	-	.	Parent=Os07t0669100-01
Chr07	irgsp1_rep	mRNA	28272363	28274883	.	-	.	ID=Os07t0669100-02;Name=Os07t0669100-02;Locus_id=Os07g0669100;Oryzabase Gene Symbol Synonym(s)=OsXYLA1;Oryzabase Gene Name Synonym(s)=xylose isomerase;Note=Similar to Xylose isomerase.;Transcript_evidence=AK104085 (DDBJ%2C Best hit);ORF_evidence=B9FUS5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: xylose isomerase activity (GO:0009045);InterPro=Xylose isomerase (IPR001998),Xylose isomerase%2C TIM barrel domain (IPR012307),Xylose isomerase-like%2C TIM barrel domain (IPR013022);NIAS_FLcDNA=001-029-F02;Oryzabase=15295;Expression=AK104085;TENOR=Os07t0669100-02;KEGG=Os07t0669100-02 (EC:5.3.1.5)
Chr07	irgsp1_rep	five_prime_UTR	28274882	28274883	.	-	.	Parent=Os07t0669100-02
Chr07	irgsp1_rep	CDS	28274849	28274881	.	-	0	Parent=Os07t0669100-02
Chr07	irgsp1_rep	CDS	28274679	28274758	.	-	0	Parent=Os07t0669100-02
Chr07	irgsp1_rep	CDS	28274545	28274599	.	-	1	Parent=Os07t0669100-02
Chr07	irgsp1_rep	CDS	28274365	28274466	.	-	0	Parent=Os07t0669100-02
Chr07	irgsp1_rep	CDS	28274209	28274260	.	-	0	Parent=Os07t0669100-02
Chr07	irgsp1_rep	CDS	28274084	28274129	.	-	2	Parent=Os07t0669100-02
Chr07	irgsp1_rep	CDS	28273954	28274009	.	-	1	Parent=Os07t0669100-02
Chr07	irgsp1_rep	CDS	28273721	28273772	.	-	2	Parent=Os07t0669100-02
Chr07	irgsp1_rep	CDS	28273565	28273644	.	-	1	Parent=Os07t0669100-02
Chr07	irgsp1_rep	CDS	28273380	28273450	.	-	2	Parent=Os07t0669100-02
Chr07	irgsp1_rep	CDS	28273246	28273286	.	-	0	Parent=Os07t0669100-02
Chr07	irgsp1_rep	CDS	28273046	28273145	.	-	1	Parent=Os07t0669100-02
Chr07	irgsp1_rep	CDS	28272896	28272967	.	-	0	Parent=Os07t0669100-02
Chr07	irgsp1_rep	CDS	28272728	28272805	.	-	0	Parent=Os07t0669100-02
Chr07	irgsp1_rep	CDS	28272584	28272619	.	-	0	Parent=Os07t0669100-02
Chr07	irgsp1_rep	three_prime_UTR	28272363	28272583	.	-	.	Parent=Os07t0669100-02
Chr07	irgsp1_rep	mRNA	28277299	28279408	.	+	.	ID=Os07t0669200-00;Name=Os07t0669200-00;Locus_id=Os07g0669200;CGSNL Gene Symbol=OBGC1;CGSNL Gene Name=OBG PROTEIN C1;Oryzabase Gene Symbol Synonym(s)=OsObgC1%2C ObgC1;Oryzabase Gene Name Synonym(s)=Spo0B-associated GTP-binding protein C1%2C Obg protein C1;Note=Similar to GTP1/OBG family protein.;Transcript_evidence=BT063209 (DDBJ);ORF_evidence=NP_197358.2 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=GTP-binding domain%2C HSR1-related (IPR002917),GTP1/OBG (IPR006073),GTP1/OBG%2C conserved site (IPR006074),GTP1/OBG subdomain (IPR006169),GTP-binding protein Obg/CgtA (IPR014100);Oryzabase=22162;TENOR=Os07t0669200-00;KEGG=Os07t0669200-00
Chr07	irgsp1_rep	CDS	28277299	28278872	.	+	0	Parent=Os07t0669200-00
Chr07	irgsp1_rep	CDS	28279084	28279408	.	+	1	Parent=Os07t0669200-00
Chr07	irgsp1_rep	mRNA	28280039	28280681	.	+	.	ID=Os07t0669250-00;Name=Os07t0669250-00;Locus_id=Os07g0669250;Note=Similar to predicted protein.;Transcript_evidence=EU950976 (DDBJ);ORF_evidence=XP_002873904.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=GTP-binding protein GTP1/OBG%2C C-terminal (IPR015349);TENOR=Os07t0669250-00;KEGG=Os07t0669250-00
Chr07	irgsp1_rep	CDS	28280039	28280229	.	+	0	Parent=Os07t0669250-00
Chr07	irgsp1_rep	CDS	28280387	28280495	.	+	1	Parent=Os07t0669250-00
Chr07	irgsp1_rep	CDS	28280582	28280677	.	+	0	Parent=Os07t0669250-00
Chr07	irgsp1_rep	three_prime_UTR	28280678	28280681	.	+	.	Parent=Os07t0669250-00
Chr07	irgsp1_rep	mRNA	28286528	28286973	.	+	.	ID=Os07t0669401-00;Name=Os07t0669401-00;Locus_id=Os07g0669401;Note=Conserved hypothetical protein.;Transcript_evidence=FP091568 (DDBJ);ORF_evidence=NP_001042416.1 (RefSeq);TENOR=Os07t0669401-00
Chr07	irgsp1_rep	five_prime_UTR	28286528	28286646	.	+	.	Parent=Os07t0669401-00
Chr07	irgsp1_rep	CDS	28286647	28286973	.	+	0	Parent=Os07t0669401-00
Chr07	irgsp1_rep	mRNA	28299602	28301089	.	-	.	ID=Os07t0669500-01;Name=Os07t0669500-01;Locus_id=Os07g0669500;RAP-DB Gene Symbol Synonym(s)=FZP%2C SGDP7%2C BFL1%2C COS1%2C qSrn7/FZP%2C qSrn7;RAP-DB Gene Name Synonym(s)=FRIZZY PANICLE%2C Small Grain and Dense Panicle 7%2C BRANCHED FLORETLESS 1%2C CONTROL OF SECONDARY BRANCH 1;CGSNL Gene Symbol=FZP;CGSNL Gene Name=FRIZZY PANICLE;Oryzabase Gene Symbol Synonym(s)=fzp*%2C fzp%2C OsBD1%2C BD1%2C OsERF#078%2C OsERF078%2C OsERF78%2C ERF78%2C AP2/EREBP#133%2C AP2/EREBP133%2C BFL1;Oryzabase Gene Name Synonym(s)=frizzy panicle%2C BRANCHED SILKLESS 1 homolog%2C ethylene response factor 78%2C APETALA2/ethylene-responsive element binding protein 133%2C BRANCHED FLORETLESS 1%2C FRIZZLE PANICLE;Note=ERF transcription factor%2C Mediation of the transition from spikelet to floret meristem%2C Determination of panicle branching and spikelet formation;Transcript_evidence=AK105365,AB103120;ORF_evidence=Q8H3Q1;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700);InterPro=AP2/ERF domain superfamily (IPR036955),DNA-binding domain superfamily (IPR016177),AP2/ERF domain (IPR001471);NIAS_FLcDNA=001-119-F02;Manual Curation=November 15%2C 2018;Literature_PMID=30131566,30101570,29085070,26744119,14503923,12835399;Oryzabase=117;Expression=AK105365;TENOR=Os07t0669500-01;KEGG=Os07t0669500-01
Chr07	irgsp1_rep	five_prime_UTR	28300975	28301089	.	-	.	Parent=Os07t0669500-01
Chr07	irgsp1_rep	CDS	28300018	28300974	.	-	0	Parent=Os07t0669500-01
Chr07	irgsp1_rep	three_prime_UTR	28299602	28300017	.	-	.	Parent=Os07t0669500-01
Chr07	irgsp1_rep	mRNA	28308445	28311581	.	-	.	ID=Os07t0669600-01;Name=Os07t0669600-01;Locus_id=Os07g0669600;Note=Conserved hypothetical protein.;Transcript_evidence=AK066595 (DDBJ%2C Best hit);ORF_evidence=B9FUS7 (UniProt);NIAS_FLcDNA=J013072A15;Expression=AK066595;TENOR=Os07t0669600-01;KEGG=Os07t0669600-01
Chr07	irgsp1_rep	five_prime_UTR	28311458	28311581	.	-	.	Parent=Os07t0669600-01
Chr07	irgsp1_rep	CDS	28311354	28311457	.	-	0	Parent=Os07t0669600-01
Chr07	irgsp1_rep	CDS	28310059	28310219	.	-	1	Parent=Os07t0669600-01
Chr07	irgsp1_rep	CDS	28309439	28309500	.	-	2	Parent=Os07t0669600-01
Chr07	irgsp1_rep	CDS	28309301	28309363	.	-	0	Parent=Os07t0669600-01
Chr07	irgsp1_rep	CDS	28309111	28309182	.	-	0	Parent=Os07t0669600-01
Chr07	irgsp1_rep	CDS	28308785	28308844	.	-	0	Parent=Os07t0669600-01
Chr07	irgsp1_rep	three_prime_UTR	28308445	28308784	.	-	.	Parent=Os07t0669600-01
Chr07	irgsp1_rep	mRNA	28312232	28313288	.	-	.	ID=Os07t0669650-01;Name=Os07t0669650-01;Locus_id=Os07g0669650;Note=Similar to Isoform 2 of Potassium transporter 7.;Transcript_evidence=AK059797 (DDBJ%2C Best hit);ORF_evidence=Q8H3P9-2 (UniProt);GO=Biological Process: potassium ion transmembrane transport (GO:0071805),Cellular Component: membrane (GO:0016020),Molecular Function: potassium ion transmembrane transporter activity (GO:0015079);InterPro=K+ potassium transporter (IPR003855);NIAS_FLcDNA=006-204-E12;Expression=AK059797;TENOR=Os07t0669650-01;KEGG=Os07t0669650-01
Chr07	irgsp1_rep	five_prime_UTR	28313288	28313288	.	-	.	Parent=Os07t0669650-01
Chr07	irgsp1_rep	CDS	28312475	28313287	.	-	0	Parent=Os07t0669650-01
Chr07	irgsp1_rep	three_prime_UTR	28312232	28312474	.	-	.	Parent=Os07t0669650-01
Chr07	irgsp1_rep	mRNA	28312477	28314380	.	+	.	ID=Os07t0669675-00;Name=Os07t0669675-00;Locus_id=Os07g0669675;Note=Hypothetical protein.;Transcript_evidence=EU967027 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0669675-00
Chr07	irgsp1_rep	five_prime_UTR	28312477	28312477	.	+	.	Parent=Os07t0669675-00
Chr07	irgsp1_rep	CDS	28312478	28312829	.	+	0	Parent=Os07t0669675-00
Chr07	irgsp1_rep	CDS	28312921	28312928	.	+	2	Parent=Os07t0669675-00
Chr07	irgsp1_rep	three_prime_UTR	28312929	28313603	.	+	.	Parent=Os07t0669675-00
Chr07	irgsp1_rep	three_prime_UTR	28314066	28314380	.	+	.	Parent=Os07t0669675-00
Chr07	irgsp1_rep	mRNA	28313327	28317670	.	-	.	ID=Os07t0669700-01;Name=Os07t0669700-01;Locus_id=Os07g0669700;CGSNL Gene Symbol=HAK7;CGSNL Gene Name=HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 7;Oryzabase Gene Symbol Synonym(s)=OsHAK7;Oryzabase Gene Name Synonym(s)=High-affinity Potassium(K+) Transporter 7%2C Potassium transporter 7;Note=Potassium transporter 4 (AtPOT4) (AtKUP3) (AtKT4).;Transcript_evidence=AK100652 (DDBJ%2C Best hit);ORF_evidence=Q8H3P9-2 (UniProt);GO=Biological Process: potassium ion transmembrane transport (GO:0071805),Cellular Component: membrane (GO:0016020),Molecular Function: potassium ion transmembrane transporter activity (GO:0015079);InterPro=K+ potassium transporter (IPR003855);NIAS_FLcDNA=J023111D12;Oryzabase=8661;Expression=AK100652;TENOR=Os07t0669700-01;KEGG=Os07t0669700-01
Chr07	irgsp1_rep	five_prime_UTR	28317488	28317670	.	-	.	Parent=Os07t0669700-01
Chr07	irgsp1_rep	CDS	28317455	28317487	.	-	0	Parent=Os07t0669700-01
Chr07	irgsp1_rep	CDS	28316408	28316651	.	-	0	Parent=Os07t0669700-01
Chr07	irgsp1_rep	CDS	28315872	28316114	.	-	2	Parent=Os07t0669700-01
Chr07	irgsp1_rep	CDS	28315700	28315753	.	-	2	Parent=Os07t0669700-01
Chr07	irgsp1_rep	CDS	28314816	28315076	.	-	2	Parent=Os07t0669700-01
Chr07	irgsp1_rep	CDS	28314675	28314727	.	-	2	Parent=Os07t0669700-01
Chr07	irgsp1_rep	CDS	28314439	28314553	.	-	0	Parent=Os07t0669700-01
Chr07	irgsp1_rep	CDS	28314096	28314350	.	-	2	Parent=Os07t0669700-01
Chr07	irgsp1_rep	CDS	28313327	28313562	.	-	2	Parent=Os07t0669700-01
Chr07	irgsp1_rep	mRNA	28325109	28326773	.	-	.	ID=Os07t0669750-00;Name=Os07t0669750-00;Locus_id=Os07g0669750;Note=Non-protein coding transcript.;Transcript_evidence=BT087029 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0669750-00
Chr07	irgsp1_rep	exon	28326566	28326773	.	-	.	Parent=Os07t0669750-00
Chr07	irgsp1_rep	exon	28326376	28326494	.	-	.	Parent=Os07t0669750-00
Chr07	irgsp1_rep	exon	28326219	28326287	.	-	.	Parent=Os07t0669750-00
Chr07	irgsp1_rep	exon	28325109	28325223	.	-	.	Parent=Os07t0669750-00
Chr07	irgsp1_rep	mRNA	28324762	28335077	.	+	.	ID=Os07t0669800-01;Name=Os07t0669800-01;Locus_id=Os07g0669800;RAP-DB Gene Symbol Synonym(s)=WG7;RAP-DB Gene Name Synonym(s)=WIDE GRAIN 7%2C CW-domain containing zinc finger protein 7;CGSNL Gene Symbol=WG7;CGSNL Gene Name=WIDE GRAIN 7;Oryzabase Gene Symbol Synonym(s)=OsCW-ZF7%2C CW-ZF7%2C CWZF7%2C OsWG7;Oryzabase Gene Name Synonym(s)=cysteine-tryptophan-domain containing zinc finger protein on Chromosome 7%2C CW-domain containing zinc finger protein 7%2C CW-domain containing protein 7;Note=Cysteine-tryptophan (CW) domain-containing zinc finger protein%2C Regulation of grain width;Transcript_evidence=AK067946 (truncated),AK062892 (truncated),Inferred from literature;ORF_evidence=B9FUS9;GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CW-type (IPR011124);NIAS_FLcDNA=J013123A08 (truncated),001-108-E05 (truncated);Manual Curation=December 16%2C 2019;Literature_PMID=31830332;Oryzabase=21909;TENOR=Os07t0669800-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	28324762	28325064	.	+	.	Parent=Os07t0669800-01
Chr07	irgsp1_rep	CDS	28325065	28325223	.	+	0	Parent=Os07t0669800-01
Chr07	irgsp1_rep	CDS	28326219	28326291	.	+	0	Parent=Os07t0669800-01
Chr07	irgsp1_rep	CDS	28326378	28326502	.	+	2	Parent=Os07t0669800-01
Chr07	irgsp1_rep	CDS	28326577	28326939	.	+	0	Parent=Os07t0669800-01
Chr07	irgsp1_rep	CDS	28327033	28328369	.	+	0	Parent=Os07t0669800-01
Chr07	irgsp1_rep	CDS	28329029	28329426	.	+	1	Parent=Os07t0669800-01
Chr07	irgsp1_rep	CDS	28329541	28331222	.	+	2	Parent=Os07t0669800-01
Chr07	irgsp1_rep	CDS	28331305	28331462	.	+	0	Parent=Os07t0669800-01
Chr07	irgsp1_rep	CDS	28332223	28332380	.	+	1	Parent=Os07t0669800-01
Chr07	irgsp1_rep	CDS	28332688	28332848	.	+	2	Parent=Os07t0669800-01
Chr07	irgsp1_rep	CDS	28333404	28333592	.	+	0	Parent=Os07t0669800-01
Chr07	irgsp1_rep	three_prime_UTR	28333593	28334085	.	+	.	Parent=Os07t0669800-01
Chr07	irgsp1_rep	three_prime_UTR	28334164	28334259	.	+	.	Parent=Os07t0669800-01
Chr07	irgsp1_rep	three_prime_UTR	28334703	28335077	.	+	.	Parent=Os07t0669800-01
Chr07	irgsp1_rep	mRNA	28335381	28337597	.	-	.	ID=Os07t0670000-01;Name=Os07t0670000-01;Locus_id=Os07g0670000;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK109518 (DDBJ%2C Best hit);ORF_evidence=A2YPS5 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-113-B01;Expression=AK109518;TENOR=Os07t0670000-01;KEGG=Os07t0670000-01
Chr07	irgsp1_rep	five_prime_UTR	28337584	28337597	.	-	.	Parent=Os07t0670000-01
Chr07	irgsp1_rep	CDS	28335403	28337583	.	-	0	Parent=Os07t0670000-01
Chr07	irgsp1_rep	three_prime_UTR	28335381	28335402	.	-	.	Parent=Os07t0670000-01
Chr07	irgsp1_rep	mRNA	28335377	28337565	.	-	.	ID=Os07t0670000-02;Name=Os07t0670000-02;Locus_id=Os07g0670000;Note=Hypothetical conserved gene.;Transcript_evidence=AK102790 (DDBJ%2C Best hit);ORF_evidence=A2YPS5 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033107P11;Expression=AK102790;TENOR=Os07t0670000-02;KEGG=Os07t0670000-02
Chr07	irgsp1_rep	CDS	28335403	28337565	.	-	0	Parent=Os07t0670000-02
Chr07	irgsp1_rep	three_prime_UTR	28335377	28335402	.	-	.	Parent=Os07t0670000-02
Chr07	irgsp1_rep	mRNA	28337741	28339272	.	+	.	ID=Os07t0670100-00;Name=Os07t0670100-00;Locus_id=Os07g0670100;Note=Hypothetical conserved gene.;Transcript_evidence=CT836088 (DDBJ%2C Best hit);ORF_evidence=Q8GSF2 (UniProt);TENOR=Os07t0670100-00;KEGG=Os07t0670100-00
Chr07	irgsp1_rep	five_prime_UTR	28337741	28337786	.	+	.	Parent=Os07t0670100-00
Chr07	irgsp1_rep	CDS	28337787	28337873	.	+	0	Parent=Os07t0670100-00
Chr07	irgsp1_rep	CDS	28338776	28338827	.	+	0	Parent=Os07t0670100-00
Chr07	irgsp1_rep	CDS	28338958	28339187	.	+	2	Parent=Os07t0670100-00
Chr07	irgsp1_rep	three_prime_UTR	28339188	28339272	.	+	.	Parent=Os07t0670100-00
Chr07	irgsp1_rep	mRNA	28339687	28340470	.	+	.	ID=Os07t0670200-01;Name=Os07t0670200-01;Locus_id=Os07g0670200;Note=C2 calcium-dependent membrane targeting domain containing protein.;Transcript_evidence=AK241936 (DDBJ%2C Best hit);ORF_evidence=NP_001060592.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=J075083N20;TENOR=Os07t0670200-01;KEGG=Os07t0670200-01
Chr07	irgsp1_rep	five_prime_UTR	28339687	28339710	.	+	.	Parent=Os07t0670200-01
Chr07	irgsp1_rep	CDS	28339711	28340409	.	+	0	Parent=Os07t0670200-01
Chr07	irgsp1_rep	three_prime_UTR	28340410	28340470	.	+	.	Parent=Os07t0670200-01
Chr07	irgsp1_rep	mRNA	28344133	28345391	.	+	.	ID=Os07t0670300-01;Name=Os07t0670300-01;Locus_id=Os07g0670300;Note=C2 calcium-dependent membrane targeting domain containing protein.;Transcript_evidence=AK061154 (DDBJ%2C Best hit),AK099020 (DDBJ%2C Best hit);ORF_evidence=NP_001149536.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973);NIAS_FLcDNA=006-208-F08,J013119K22;Expression=AK061154;TENOR=Os07t0670300-01;KEGG=Os07t0670300-01
Chr07	irgsp1_rep	five_prime_UTR	28344133	28344219	.	+	.	Parent=Os07t0670300-01
Chr07	irgsp1_rep	CDS	28344220	28345152	.	+	0	Parent=Os07t0670300-01
Chr07	irgsp1_rep	three_prime_UTR	28345153	28345391	.	+	.	Parent=Os07t0670300-01
Chr07	irgsp1_rep	mRNA	28352574	28354759	.	+	.	ID=Os07t0670600-01;Name=Os07t0670600-01;Locus_id=Os07g0670600;Note=Ribosome biogenesis factor%2C NIP7 domain containing protein.;Transcript_evidence=AK102921 (DDBJ%2C Best hit),AK060349 (DDBJ%2C Best hit);ORF_evidence=NP_001149524.1 (RefSeq);GO=Biological Process: ribosome assembly (GO:0042255),Cellular Component: nucleus (GO:0005634),Molecular Function: RNA binding (GO:0003723);InterPro=Pseudouridine synthase/archaeosine transglycosylase (IPR002478),Ribosome biogenesis factor NIP7-like (IPR005155),PUA-like domain (IPR015947),Ribosome biogenesis factor%2C NIP7 (IPR016686);NIAS_FLcDNA=J033114C10,001-008-F05;TENOR=Os07t0670600-01
Chr07	irgsp1_rep	five_prime_UTR	28352574	28352640	.	+	.	Parent=Os07t0670600-01
Chr07	irgsp1_rep	CDS	28352641	28353207	.	+	0	Parent=Os07t0670600-01
Chr07	irgsp1_rep	three_prime_UTR	28353208	28353208	.	+	.	Parent=Os07t0670600-01
Chr07	irgsp1_rep	three_prime_UTR	28354465	28354759	.	+	.	Parent=Os07t0670600-01
Chr07	irgsp1_rep	mRNA	28359231	28360244	.	-	.	ID=Os07t0670701-00;Name=Os07t0670701-00;Locus_id=Os07g0670701;Note=Non-protein coding transcript.;Transcript_evidence=BT016919 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0670701-00
Chr07	irgsp1_rep	exon	28359992	28360244	.	-	.	Parent=Os07t0670701-00
Chr07	irgsp1_rep	exon	28359231	28359550	.	-	.	Parent=Os07t0670701-00
Chr07	irgsp1_rep	mRNA	28359324	28360325	.	+	.	ID=Os07t0670800-01;Name=Os07t0670800-01;Locus_id=Os07g0670800;Note=Similar to 60S ribosomal protein L19-3.;Transcript_evidence=AK241287 (DDBJ%2C Best hit);ORF_evidence=NP_001148813.1 (RefSeq);NIAS_FLcDNA=J065137C23;TENOR=Os07t0670800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	28359324	28359378	.	+	.	Parent=Os07t0670800-01
Chr07	irgsp1_rep	CDS	28359379	28359540	.	+	0	Parent=Os07t0670800-01
Chr07	irgsp1_rep	three_prime_UTR	28359541	28359555	.	+	.	Parent=Os07t0670800-01
Chr07	irgsp1_rep	three_prime_UTR	28359652	28359710	.	+	.	Parent=Os07t0670800-01
Chr07	irgsp1_rep	three_prime_UTR	28359922	28360325	.	+	.	Parent=Os07t0670800-01
Chr07	irgsp1_rep	mRNA	28367865	28368346	.	+	.	ID=Os07t0671000-01;Name=Os07t0671000-01;Locus_id=Os07g0671000;RAP-DB Gene Symbol Synonym(s)=ACL1;RAP-DB Gene Name Synonym(s)=ACE1-LIKE 1;CGSNL Gene Symbol=FPFL5;CGSNL Gene Name=FPF1-LIKE PROTEIN 5;Oryzabase Gene Symbol Synonym(s)=OsFPFL5%2C ACL1%2C OsACL1;Oryzabase Gene Name Synonym(s)=FPF1-like protein 5%2C FPF1-like 5%2C flowering-promoting factor 1-like 5%2C ACE1-LIKE 1;Note=Homologue of Arabidopsis FLOWERING PROMOTING FACTOR1 (FPF1)%2C ACE1 homologue%2C Control of internode elongation during the reproductive phase;Transcript_evidence=Inferred from literature;ORF_evidence=A3BNA1;Manual Curation=July 20%2C 2020;Literature_PMID=32669710;Oryzabase=23448;TENOR=Os07t0671000-00
Chr07	irgsp1_rep	five_prime_UTR	28367865	28367942	.	+	.	Parent=Os07t0671000-01
Chr07	irgsp1_rep	CDS	28367943	28368260	.	+	0	Parent=Os07t0671000-01
Chr07	irgsp1_rep	three_prime_UTR	28368261	28368346	.	+	.	Parent=Os07t0671000-01
Chr07	irgsp1_rep	mRNA	28371722	28372968	.	+	.	ID=Os07t0671100-01;Name=Os07t0671100-01;Locus_id=Os07g0671100;Note=Hypothetical conserved gene.;Transcript_evidence=AK287935 (DDBJ%2C Best hit);ORF_evidence=B9FUT4 (UniProt);NIAS_FLcDNA=J075004B10;TENOR=Os07t0671100-01;KEGG=Os07t0671100-01
Chr07	irgsp1_rep	five_prime_UTR	28371722	28371833	.	+	.	Parent=Os07t0671100-01
Chr07	irgsp1_rep	CDS	28371834	28371887	.	+	0	Parent=Os07t0671100-01
Chr07	irgsp1_rep	CDS	28371998	28372036	.	+	0	Parent=Os07t0671100-01
Chr07	irgsp1_rep	CDS	28372122	28372175	.	+	0	Parent=Os07t0671100-01
Chr07	irgsp1_rep	CDS	28372305	28372358	.	+	0	Parent=Os07t0671100-01
Chr07	irgsp1_rep	CDS	28372467	28372680	.	+	0	Parent=Os07t0671100-01
Chr07	irgsp1_rep	CDS	28372789	28372844	.	+	2	Parent=Os07t0671100-01
Chr07	irgsp1_rep	three_prime_UTR	28372845	28372968	.	+	.	Parent=Os07t0671100-01
Chr07	irgsp1_rep	mRNA	28373368	28375043	.	-	.	ID=Os07t0671200-00;Name=Os07t0671200-00;Locus_id=Os07g0671200;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=EU971084 (DDBJ);ORF_evidence=NP_001060597.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os07t0671200-00;KEGG=Os07t0671200-00
Chr07	irgsp1_rep	five_prime_UTR	28375024	28375043	.	-	.	Parent=Os07t0671200-00
Chr07	irgsp1_rep	CDS	28373368	28375023	.	-	0	Parent=Os07t0671200-00
Chr07	irgsp1_rep	mRNA	28382452	28383736	.	-	.	ID=Os07t0671301-00;Name=Os07t0671301-00;Locus_id=Os07g0671301;Note=Hypothetical gene.;Transcript_evidence=EU973702 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0671301-00;KEGG=Os07t0671301-00
Chr07	irgsp1_rep	CDS	28383083	28383736	.	-	0	Parent=Os07t0671301-00
Chr07	irgsp1_rep	three_prime_UTR	28382782	28383082	.	-	.	Parent=Os07t0671301-00
Chr07	irgsp1_rep	three_prime_UTR	28382452	28382715	.	-	.	Parent=Os07t0671301-00
Chr07	irgsp1_rep	mRNA	28382557	28384123	.	+	.	ID=Os07t0671400-01;Name=Os07t0671400-01;Locus_id=Os07g0671400;CGSNL Gene Symbol=HMP36;CGSNL Gene Name=HEAVY METAL-ASSOCIATED PROTEIN 36;Oryzabase Gene Symbol Synonym(s)=OsHMP36;Oryzabase Gene Name Synonym(s)=Heavy metal-associated protein 36;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK067933 (DDBJ%2C Best hit);ORF_evidence=NP_001149888.1 (RefSeq);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);NIAS_FLcDNA=J013128A09;Oryzabase=23552;Expression=AK067933;TENOR=Os07t0671400-01;KEGG=Os07t0671400-01
Chr07	irgsp1_rep	five_prime_UTR	28382557	28382667	.	+	.	Parent=Os07t0671400-01
Chr07	irgsp1_rep	CDS	28382668	28382703	.	+	0	Parent=Os07t0671400-01
Chr07	irgsp1_rep	CDS	28382838	28382913	.	+	0	Parent=Os07t0671400-01
Chr07	irgsp1_rep	CDS	28382991	28383028	.	+	2	Parent=Os07t0671400-01
Chr07	irgsp1_rep	CDS	28383143	28383883	.	+	0	Parent=Os07t0671400-01
Chr07	irgsp1_rep	three_prime_UTR	28383884	28384123	.	+	.	Parent=Os07t0671400-01
Chr07	irgsp1_rep	mRNA	28392125	28392684	.	+	.	ID=Os07t0671450-00;Name=Os07t0671450-00;Locus_id=Os07g0671450;Note=Non-protein coding transcript.;Transcript_evidence=EU946797 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0671450-00
Chr07	irgsp1_rep	exon	28392125	28392684	.	+	.	Parent=Os07t0671450-00
Chr07	irgsp1_rep	mRNA	28393569	28400306	.	-	.	ID=Os07t0671500-01;Name=Os07t0671500-01;Locus_id=Os07g0671500;CGSNL Gene Symbol=GH3-11;CGSNL Gene Name=GH3-11;Oryzabase Gene Symbol Synonym(s)=OsGH3-11%2C OsGH3.11%2C GH3.11;Note=Similar to Indole-3-acetic acid-amido synthetase GH3.17 (EC 6.3.2.-) (Auxin- responsive GH3-like protein 17) (AtGH3-17).;Transcript_evidence=AK122014 (DDBJ%2C Best hit);ORF_evidence=XP_002302704.1 (RefSeq);InterPro=GH3 auxin-responsive promoter (IPR004993);NIAS_FLcDNA=J033111J15;Oryzabase=11629;TENOR=Os07t0671500-01
Chr07	irgsp1_rep	five_prime_UTR	28400052	28400306	.	-	.	Parent=Os07t0671500-01
Chr07	irgsp1_rep	five_prime_UTR	28396650	28397613	.	-	.	Parent=Os07t0671500-01
Chr07	irgsp1_rep	CDS	28396360	28396649	.	-	0	Parent=Os07t0671500-01
Chr07	irgsp1_rep	CDS	28394682	28394783	.	-	1	Parent=Os07t0671500-01
Chr07	irgsp1_rep	CDS	28393569	28393904	.	-	1	Parent=Os07t0671500-01
Chr07	irgsp1_rep	mRNA	28393569	28399606	.	-	.	ID=Os07t0671500-02;Name=Os07t0671500-02;Locus_id=Os07g0671500;CGSNL Gene Symbol=GH3-11;CGSNL Gene Name=GH3-11;Oryzabase Gene Symbol Synonym(s)=OsGH3-11%2C OsGH3.11%2C GH3.11;Note=Similar to Indole-3-acetic acid-amido synthetase GH3.17 (EC 6.3.2.-) (Auxin- responsive GH3-like protein 17) (AtGH3-17).;Transcript_evidence=AK065412 (DDBJ%2C Best hit);ORF_evidence=XP_002302704.1 (RefSeq);InterPro=GH3 auxin-responsive promoter (IPR004993);NIAS_FLcDNA=J013021C10;Oryzabase=11629;TENOR=Os07t0671500-02
Chr07	irgsp1_rep	five_prime_UTR	28396650	28399606	.	-	.	Parent=Os07t0671500-02
Chr07	irgsp1_rep	CDS	28396360	28396649	.	-	0	Parent=Os07t0671500-02
Chr07	irgsp1_rep	CDS	28394682	28394783	.	-	1	Parent=Os07t0671500-02
Chr07	irgsp1_rep	CDS	28393569	28393904	.	-	1	Parent=Os07t0671500-02
Chr07	irgsp1_rep	mRNA	28402333	28409552	.	+	.	ID=Os07t0671700-01;Name=Os07t0671700-01;Locus_id=Os07g0671700;RAP-DB Gene Symbol Synonym(s)=OsPRMT4;RAP-DB Gene Name Synonym(s)=protein arginine methyltransferase 4;CGSNL Gene Symbol=PRMT4;CGSNL Gene Name=PROTEIN ARGININE METHYLTRANSFERASE 4;Oryzabase Gene Symbol Synonym(s)=OsPRMT4;Oryzabase Gene Name Synonym(s)=protein arginine methyltransferase 4;Note=Type I protein arginine methyltransferase;Transcript_evidence=AK065980;ORF_evidence=Q7XI75;GO=Biological Process: protein methylation (GO:0006479),Molecular Function: methyltransferase activity (GO:0008168);InterPro=S-adenosyl-L-methionine-dependent methyltransferase (IPR029063),Protein arginine N-methyltransferase (IPR025799);NIAS_FLcDNA=J013049G01;Manual Curation=September 1%2C 2020;Literature_PMID=21853042;Oryzabase=9674;Expression=AK065980;TENOR=Os07t0671700-01;KEGG=Os07t0671700-01 (EC:2.1.1.319)
Chr07	irgsp1_rep	five_prime_UTR	28402333	28402474	.	+	.	Parent=Os07t0671700-01
Chr07	irgsp1_rep	CDS	28402475	28402678	.	+	0	Parent=Os07t0671700-01
Chr07	irgsp1_rep	CDS	28402841	28402912	.	+	0	Parent=Os07t0671700-01
Chr07	irgsp1_rep	CDS	28403736	28403844	.	+	0	Parent=Os07t0671700-01
Chr07	irgsp1_rep	CDS	28404551	28404694	.	+	2	Parent=Os07t0671700-01
Chr07	irgsp1_rep	CDS	28404791	28404894	.	+	2	Parent=Os07t0671700-01
Chr07	irgsp1_rep	CDS	28404979	28405077	.	+	0	Parent=Os07t0671700-01
Chr07	irgsp1_rep	CDS	28405160	28405229	.	+	0	Parent=Os07t0671700-01
Chr07	irgsp1_rep	CDS	28405705	28405801	.	+	2	Parent=Os07t0671700-01
Chr07	irgsp1_rep	CDS	28406021	28406075	.	+	1	Parent=Os07t0671700-01
Chr07	irgsp1_rep	CDS	28407085	28407168	.	+	0	Parent=Os07t0671700-01
Chr07	irgsp1_rep	CDS	28407429	28407506	.	+	0	Parent=Os07t0671700-01
Chr07	irgsp1_rep	CDS	28407605	28407708	.	+	0	Parent=Os07t0671700-01
Chr07	irgsp1_rep	CDS	28407790	28407962	.	+	1	Parent=Os07t0671700-01
Chr07	irgsp1_rep	CDS	28408056	28408213	.	+	2	Parent=Os07t0671700-01
Chr07	irgsp1_rep	CDS	28408889	28408924	.	+	0	Parent=Os07t0671700-01
Chr07	irgsp1_rep	three_prime_UTR	28408925	28408964	.	+	.	Parent=Os07t0671700-01
Chr07	irgsp1_rep	three_prime_UTR	28409176	28409552	.	+	.	Parent=Os07t0671700-01
Chr07	irgsp1_rep	mRNA	28410540	28412846	.	+	.	ID=Os07t0671800-01;Name=Os07t0671800-01;Locus_id=Os07g0671800;Note=Similar to Stress-related protein-like protein (Fragment).;Transcript_evidence=AK105010 (DDBJ%2C Best hit),AK073988 (DDBJ%2C Best hit),AK104182 (DDBJ%2C Best hit),AK104568 (DDBJ%2C Best hit),AK106149 (DDBJ%2C Best hit);ORF_evidence=Q84PD3 (UniProt);InterPro=Rubber elongation factor (IPR008802);NIAS_FLcDNA=001-007-D12,J033074G19,006-302-C04,006-306-F09,001-207-H07;TENOR=Os07t0671800-01
Chr07	irgsp1_rep	five_prime_UTR	28410540	28410541	.	+	.	Parent=Os07t0671800-01
Chr07	irgsp1_rep	CDS	28410542	28410697	.	+	0	Parent=Os07t0671800-01
Chr07	irgsp1_rep	CDS	28410817	28411059	.	+	0	Parent=Os07t0671800-01
Chr07	irgsp1_rep	CDS	28412093	28412593	.	+	0	Parent=Os07t0671800-01
Chr07	irgsp1_rep	three_prime_UTR	28412594	28412846	.	+	.	Parent=Os07t0671800-01
Chr07	irgsp1_rep	mRNA	28411918	28412661	.	-	.	ID=Os07t0671901-01;Name=Os07t0671901-01;Locus_id=Os07g0671901;Note=Hypothetical gene.;Transcript_evidence=AK241524 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065171A14;TENOR=Os07t0671901-01;KEGG=Os07t0671901-01
Chr07	irgsp1_rep	five_prime_UTR	28412661	28412661	.	-	.	Parent=Os07t0671901-01
Chr07	irgsp1_rep	CDS	28412373	28412660	.	-	0	Parent=Os07t0671901-01
Chr07	irgsp1_rep	three_prime_UTR	28411918	28412372	.	-	.	Parent=Os07t0671901-01
Chr07	irgsp1_rep	mRNA	28415288	28415727	.	+	.	ID=Os07t0672175-00;Name=Os07t0672175-00;Locus_id=Os07g0672175;Note=Similar to armadillo/beta-catenin repeat family protein / BTB/POZ domain-containing protein.;Transcript_evidence=EU955146 (DDBJ);ORF_evidence=NP_850852.1 (RefSeq);TENOR=Os07t0672175-00
Chr07	irgsp1_rep	five_prime_UTR	28415288	28415321	.	+	.	Parent=Os07t0672175-00
Chr07	irgsp1_rep	CDS	28415322	28415467	.	+	0	Parent=Os07t0672175-00
Chr07	irgsp1_rep	CDS	28415591	28415681	.	+	1	Parent=Os07t0672175-00
Chr07	irgsp1_rep	three_prime_UTR	28415682	28415727	.	+	.	Parent=Os07t0672175-00
Chr07	irgsp1_rep	mRNA	28417340	28418465	.	+	.	ID=Os07t0672300-00;Name=Os07t0672300-00;Locus_id=Os07g0672300;Note=Protein of unknown function DUF247%2C plant domain containing protein.;Transcript_evidence=EU974090 (DDBJ);ORF_evidence=A2ZKH4 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);TENOR=Os07t0672300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	28417340	28417599	.	+	.	Parent=Os07t0672300-00
Chr07	irgsp1_rep	CDS	28417600	28417930	.	+	0	Parent=Os07t0672300-00
Chr07	irgsp1_rep	CDS	28418033	28418160	.	+	2	Parent=Os07t0672300-00
Chr07	irgsp1_rep	CDS	28418226	28418465	.	+	0	Parent=Os07t0672300-00
Chr07	irgsp1_rep	mRNA	28423632	28424757	.	+	.	ID=Os07t0672500-01;Name=Os07t0672500-01;Locus_id=Os07g0672500;Note=Hypothetical conserved gene.;Transcript_evidence=AK119940 (DDBJ%2C Best hit);ORF_evidence=B9FUU0 (UniProt);NIAS_FLcDNA=002-184-B06;Expression=AK119940;TENOR=Os07t0672500-01;KEGG=Os07t0672500-01
Chr07	irgsp1_rep	five_prime_UTR	28423632	28423803	.	+	.	Parent=Os07t0672500-01
Chr07	irgsp1_rep	CDS	28423804	28423947	.	+	0	Parent=Os07t0672500-01
Chr07	irgsp1_rep	CDS	28424030	28424189	.	+	0	Parent=Os07t0672500-01
Chr07	irgsp1_rep	CDS	28424282	28424418	.	+	2	Parent=Os07t0672500-01
Chr07	irgsp1_rep	three_prime_UTR	28424419	28424757	.	+	.	Parent=Os07t0672500-01
Chr07	irgsp1_rep	mRNA	28423644	28435286	.	+	.	ID=Os07t0672500-02;Name=Os07t0672500-02;Locus_id=Os07g0672500;Note=ATPase%2C AAA-type%2C core domain containing protein.;Transcript_evidence=AK067432 (DDBJ%2C Best hit);ORF_evidence=B8B5U6 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=Forkhead-associated (FHA) domain (IPR000253),ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960),SMAD/FHA domain (IPR008984);NIAS_FLcDNA=J013100B13;Expression=AK067432;TENOR=Os07t0672500-02;KEGG=Os07t0672500-02
Chr07	irgsp1_rep	five_prime_UTR	28423644	28423803	.	+	.	Parent=Os07t0672500-02
Chr07	irgsp1_rep	CDS	28423804	28423947	.	+	0	Parent=Os07t0672500-02
Chr07	irgsp1_rep	CDS	28424030	28424189	.	+	0	Parent=Os07t0672500-02
Chr07	irgsp1_rep	CDS	28424282	28424409	.	+	2	Parent=Os07t0672500-02
Chr07	irgsp1_rep	CDS	28426090	28426206	.	+	0	Parent=Os07t0672500-02
Chr07	irgsp1_rep	CDS	28426307	28426438	.	+	0	Parent=Os07t0672500-02
Chr07	irgsp1_rep	CDS	28426563	28426740	.	+	0	Parent=Os07t0672500-02
Chr07	irgsp1_rep	CDS	28427095	28427266	.	+	2	Parent=Os07t0672500-02
Chr07	irgsp1_rep	CDS	28428030	28428151	.	+	1	Parent=Os07t0672500-02
Chr07	irgsp1_rep	CDS	28428304	28428395	.	+	2	Parent=Os07t0672500-02
Chr07	irgsp1_rep	CDS	28428909	28428951	.	+	0	Parent=Os07t0672500-02
Chr07	irgsp1_rep	CDS	28429174	28429234	.	+	2	Parent=Os07t0672500-02
Chr07	irgsp1_rep	CDS	28429945	28430093	.	+	1	Parent=Os07t0672500-02
Chr07	irgsp1_rep	CDS	28430237	28430307	.	+	2	Parent=Os07t0672500-02
Chr07	irgsp1_rep	CDS	28430383	28430553	.	+	0	Parent=Os07t0672500-02
Chr07	irgsp1_rep	CDS	28430634	28430702	.	+	0	Parent=Os07t0672500-02
Chr07	irgsp1_rep	CDS	28431005	28431106	.	+	0	Parent=Os07t0672500-02
Chr07	irgsp1_rep	CDS	28431186	28431275	.	+	0	Parent=Os07t0672500-02
Chr07	irgsp1_rep	CDS	28431638	28431716	.	+	0	Parent=Os07t0672500-02
Chr07	irgsp1_rep	CDS	28431816	28431915	.	+	2	Parent=Os07t0672500-02
Chr07	irgsp1_rep	CDS	28432016	28432091	.	+	1	Parent=Os07t0672500-02
Chr07	irgsp1_rep	CDS	28432293	28432472	.	+	0	Parent=Os07t0672500-02
Chr07	irgsp1_rep	CDS	28433008	28433130	.	+	0	Parent=Os07t0672500-02
Chr07	irgsp1_rep	CDS	28433212	28433295	.	+	0	Parent=Os07t0672500-02
Chr07	irgsp1_rep	CDS	28433646	28433830	.	+	0	Parent=Os07t0672500-02
Chr07	irgsp1_rep	CDS	28433917	28434055	.	+	1	Parent=Os07t0672500-02
Chr07	irgsp1_rep	CDS	28434163	28434222	.	+	0	Parent=Os07t0672500-02
Chr07	irgsp1_rep	CDS	28434504	28434608	.	+	0	Parent=Os07t0672500-02
Chr07	irgsp1_rep	CDS	28434910	28435023	.	+	0	Parent=Os07t0672500-02
Chr07	irgsp1_rep	three_prime_UTR	28435024	28435286	.	+	.	Parent=Os07t0672500-02
Chr07	irgsp1_rep	mRNA	28425025	28425406	.	+	.	ID=Os07t0672534-00;Name=Os07t0672534-00;Locus_id=Os07g0672534;Note=Non-protein coding transcript.;Transcript_evidence=EU948395 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0672534-00
Chr07	irgsp1_rep	exon	28425025	28425406	.	+	.	Parent=Os07t0672534-00
Chr07	irgsp1_rep	mRNA	28435817	28436840	.	+	.	ID=Os07t0672566-00;Name=Os07t0672566-00;Locus_id=Os07g0672566;Note=Hypothetical gene.;Transcript_evidence=CT836116 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os07t0672566-00;KEGG=Os07t0672566-00
Chr07	irgsp1_rep	five_prime_UTR	28435817	28435971	.	+	.	Parent=Os07t0672566-00
Chr07	irgsp1_rep	CDS	28435972	28436610	.	+	0	Parent=Os07t0672566-00
Chr07	irgsp1_rep	three_prime_UTR	28436611	28436840	.	+	.	Parent=Os07t0672566-00
Chr07	irgsp1_rep	mRNA	28435912	28437519	.	-	.	ID=Os07t0672600-00;Name=Os07t0672600-00;Locus_id=Os07g0672600;Note=Hypothetical conserved gene.;Transcript_evidence=CT836114 (DDBJ%2C Best hit);ORF_evidence=Q8H463 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237);InterPro=Tubby%2C C-terminal (IPR000007),Initiation factor 2B-related (IPR000649),Protein of unknown function DUF567 (IPR007612);TENOR=Os07t0672600-00;KEGG=Os07t0672600-00
Chr07	irgsp1_rep	five_prime_UTR	28437447	28437519	.	-	.	Parent=Os07t0672600-00
Chr07	irgsp1_rep	CDS	28437201	28437446	.	-	0	Parent=Os07t0672600-00
Chr07	irgsp1_rep	CDS	28436098	28436541	.	-	0	Parent=Os07t0672600-00
Chr07	irgsp1_rep	three_prime_UTR	28435912	28436097	.	-	.	Parent=Os07t0672600-00
Chr07	irgsp1_rep	mRNA	28440031	28441746	.	-	.	ID=Os07t0672700-00;Name=Os07t0672700-00;Locus_id=Os07g0672700;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=BT040597 (DDBJ);ORF_evidence=NP_001147268.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os07t0672700-00;KEGG=Os07t0672700-00
Chr07	irgsp1_rep	CDS	28440031	28441746	.	-	0	Parent=Os07t0672700-00
Chr07	irgsp1_rep	mRNA	28445953	28448448	.	+	.	ID=Os07t0673000-01;Name=Os07t0673000-01;Locus_id=Os07g0673000;Note=Ureohydrolase domain containing protein.;Transcript_evidence=AK063364 (DDBJ%2C Best hit);ORF_evidence=Q7XI74 (UniProt);NIAS_FLcDNA=001-114-D07;Expression=AK063364;TENOR=Os07t0673000-01;KEGG=Os07t0673000-01
Chr07	irgsp1_rep	five_prime_UTR	28445953	28445968	.	+	.	Parent=Os07t0673000-01
Chr07	irgsp1_rep	CDS	28445969	28446066	.	+	0	Parent=Os07t0673000-01
Chr07	irgsp1_rep	CDS	28446167	28446401	.	+	1	Parent=Os07t0673000-01
Chr07	irgsp1_rep	CDS	28446553	28446630	.	+	0	Parent=Os07t0673000-01
Chr07	irgsp1_rep	CDS	28446728	28446870	.	+	0	Parent=Os07t0673000-01
Chr07	irgsp1_rep	CDS	28447297	28447367	.	+	1	Parent=Os07t0673000-01
Chr07	irgsp1_rep	CDS	28447459	28447554	.	+	2	Parent=Os07t0673000-01
Chr07	irgsp1_rep	CDS	28447747	28447839	.	+	2	Parent=Os07t0673000-01
Chr07	irgsp1_rep	CDS	28447929	28448011	.	+	2	Parent=Os07t0673000-01
Chr07	irgsp1_rep	three_prime_UTR	28448012	28448448	.	+	.	Parent=Os07t0673000-01
Chr07	irgsp1_rep	mRNA	28448559	28451200	.	-	.	ID=Os07t0673100-01;Name=Os07t0673100-01;Locus_id=Os07g0673100;Oryzabase Gene Symbol Synonym(s)=OsTINP1;Oryzabase Gene Name Synonym(s)=TGF-b-inducible nuclear protein 1;Note=Ribosomal protein S8e domain containing protein.;Transcript_evidence=AK103678 (DDBJ%2C Best hit),AK060100 (DDBJ%2C Best hit),AK104794 (DDBJ%2C Best hit);ORF_evidence=XP_002871214.1 (RefSeq);InterPro=Ribosomal protein S8e/ribosomal biogenesis NSA2 (IPR022309);NIAS_FLcDNA=J033136C23,006-307-H11,001-039-G01;Oryzabase=19922;Expression=AK103678;TENOR=Os07t0673100-01;KEGG=Os07t0673100-01
Chr07	irgsp1_rep	five_prime_UTR	28451146	28451200	.	-	.	Parent=Os07t0673100-01
Chr07	irgsp1_rep	CDS	28451143	28451145	.	-	0	Parent=Os07t0673100-01
Chr07	irgsp1_rep	CDS	28450844	28450963	.	-	0	Parent=Os07t0673100-01
Chr07	irgsp1_rep	CDS	28450682	28450749	.	-	0	Parent=Os07t0673100-01
Chr07	irgsp1_rep	CDS	28450264	28450369	.	-	1	Parent=Os07t0673100-01
Chr07	irgsp1_rep	CDS	28450087	28450155	.	-	0	Parent=Os07t0673100-01
Chr07	irgsp1_rep	CDS	28449940	28449997	.	-	0	Parent=Os07t0673100-01
Chr07	irgsp1_rep	CDS	28449435	28449670	.	-	2	Parent=Os07t0673100-01
Chr07	irgsp1_rep	CDS	28449102	28449153	.	-	0	Parent=Os07t0673100-01
Chr07	irgsp1_rep	CDS	28448947	28449014	.	-	2	Parent=Os07t0673100-01
Chr07	irgsp1_rep	three_prime_UTR	28448559	28448946	.	-	.	Parent=Os07t0673100-01
Chr07	irgsp1_rep	mRNA	28452751	28456565	.	-	.	ID=Os07t0673200-01;Name=Os07t0673200-01;Locus_id=Os07g0673200;RAP-DB Gene Symbol Synonym(s)=OsNLA1;RAP-DB Gene Name Synonym(s)=nitrogen limitation adaptation 1;CGSNL Gene Symbol=NLA1;CGSNL Gene Name=NITROGEN LIMITATION ADAPTATION 1;Oryzabase Gene Symbol Synonym(s)=OsRFPHC-13%2C OsNLA%2C NLA%2C OsNLA1%2C OsNLA1.1%2C OsNLA1.2%2C OsNLA1.3;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPHC-13%2C RING-HC protein 13%2C nitrogen limitation adaptation;Note=RING-type E3 ubiquitin-ligase%2C Maintenance of phosphate homeostasis via degradation of phosphate transporters;Transcript_evidence=AK065454;ORF_evidence=Q7XI73;InterPro=E3 ubiquitin-protein ligase BAH1 (IPR033326),SPX domain (IPR004331),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841);NIAS_FLcDNA=J013024P14;Manual Curation=May 8%2C 2017;Literature_PMID=28229491;Oryzabase=11796;Expression=AK065454;TENOR=Os07t0673200-01;KEGG=Os07t0673200-01 (EC:2.3.2.27);Subcellular location=plasma membrane (GO:0005886)
Chr07	irgsp1_rep	five_prime_UTR	28456095	28456565	.	-	.	Parent=Os07t0673200-01
Chr07	irgsp1_rep	CDS	28455929	28456094	.	-	0	Parent=Os07t0673200-01
Chr07	irgsp1_rep	CDS	28454499	28454743	.	-	2	Parent=Os07t0673200-01
Chr07	irgsp1_rep	CDS	28453800	28454051	.	-	0	Parent=Os07t0673200-01
Chr07	irgsp1_rep	CDS	28453444	28453581	.	-	0	Parent=Os07t0673200-01
Chr07	irgsp1_rep	CDS	28453277	28453335	.	-	0	Parent=Os07t0673200-01
Chr07	irgsp1_rep	CDS	28453007	28453112	.	-	1	Parent=Os07t0673200-01
Chr07	irgsp1_rep	three_prime_UTR	28452751	28453006	.	-	.	Parent=Os07t0673200-01
Chr07	irgsp1_rep	mRNA	28468527	28469554	.	+	.	ID=Os07t0673400-01;Name=Os07t0673400-01;Locus_id=Os07g0673400;Oryzabase Gene Symbol Synonym(s)=OsUsp1;Oryzabase Gene Name Synonym(s)=universal stress protein 1;Note=Rossmann-like alpha/beta/alpha sandwich fold domain containing protein.;Transcript_evidence=AK064061 (DDBJ%2C Best hit);ORF_evidence=Q4VSM2 (UniProt);GO=Biological Process: response to stress (GO:0006950);InterPro=Universal stress protein A (IPR006015),UspA (IPR006016),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=001-125-F10;Oryzabase=11068;Expression=AK064061;TENOR=Os07t0673400-01;KEGG=Os07t0673400-01
Chr07	irgsp1_rep	five_prime_UTR	28468527	28468708	.	+	.	Parent=Os07t0673400-01
Chr07	irgsp1_rep	CDS	28468709	28468904	.	+	0	Parent=Os07t0673400-01
Chr07	irgsp1_rep	CDS	28468974	28469068	.	+	2	Parent=Os07t0673400-01
Chr07	irgsp1_rep	CDS	28469182	28469406	.	+	0	Parent=Os07t0673400-01
Chr07	irgsp1_rep	three_prime_UTR	28469407	28469554	.	+	.	Parent=Os07t0673400-01
Chr07	irgsp1_rep	mRNA	28468619	28469554	.	+	.	ID=Os07t0673400-02;Name=Os07t0673400-02;Locus_id=Os07g0673400;Oryzabase Gene Symbol Synonym(s)=OsUsp1;Oryzabase Gene Name Synonym(s)=universal stress protein 1;Note=Similar to Universal stress protein.;Transcript_evidence=AK073356 (DDBJ%2C Best hit);ORF_evidence=Q4VSM2 (UniProt);GO=Biological Process: response to stress (GO:0006950);InterPro=UspA (IPR006016),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J033028K22;Oryzabase=11068;Expression=AK073356;TENOR=Os07t0673400-02;KEGG=Os07t0673400-02
Chr07	irgsp1_rep	five_prime_UTR	28468619	28468708	.	+	.	Parent=Os07t0673400-02
Chr07	irgsp1_rep	CDS	28468709	28468930	.	+	0	Parent=Os07t0673400-02
Chr07	irgsp1_rep	three_prime_UTR	28468931	28469554	.	+	.	Parent=Os07t0673400-02
Chr07	irgsp1_rep	mRNA	28469795	28474153	.	-	.	ID=Os07t0673500-01;Name=Os07t0673500-01;Locus_id=Os07g0673500;CGSNL Gene Symbol=SRP33B;CGSNL Gene Name=SERINE/ARGININE-RICH PROTEIN 33B;Oryzabase Gene Symbol Synonym(s)=Os-SR33%2C OsSR33%2C SR33%2C OsSRp33b%2C Os-SRp33b;Oryzabase Gene Name Synonym(s)=Serine/Arginine-Rich Protein Splicing Factor 33b%2C Serine/Arginine-Rich Protein 33b%2C SR Protein 33b%2C SR subfamily protein 33b;Note=Similar to ASF/SF2-like pre-mRNA splicing factor SRP32''.;Transcript_evidence=AK106176 (DDBJ%2C Best hit);ORF_evidence=Q2QKB0 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-208-C08;Oryzabase=22733;Expression=AK106176;TENOR=Os07t0673500-01;KEGG=Os07t0673500-01
Chr07	irgsp1_rep	five_prime_UTR	28474018	28474153	.	-	.	Parent=Os07t0673500-01
Chr07	irgsp1_rep	five_prime_UTR	28473689	28473696	.	-	.	Parent=Os07t0673500-01
Chr07	irgsp1_rep	CDS	28473602	28473688	.	-	0	Parent=Os07t0673500-01
Chr07	irgsp1_rep	CDS	28473293	28473358	.	-	0	Parent=Os07t0673500-01
Chr07	irgsp1_rep	CDS	28473024	28473098	.	-	0	Parent=Os07t0673500-01
Chr07	irgsp1_rep	CDS	28472856	28472955	.	-	0	Parent=Os07t0673500-01
Chr07	irgsp1_rep	CDS	28472714	28472760	.	-	2	Parent=Os07t0673500-01
Chr07	irgsp1_rep	CDS	28472546	28472603	.	-	0	Parent=Os07t0673500-01
Chr07	irgsp1_rep	CDS	28471979	28472028	.	-	2	Parent=Os07t0673500-01
Chr07	irgsp1_rep	CDS	28471734	28471790	.	-	0	Parent=Os07t0673500-01
Chr07	irgsp1_rep	CDS	28471559	28471650	.	-	0	Parent=Os07t0673500-01
Chr07	irgsp1_rep	CDS	28471379	28471483	.	-	1	Parent=Os07t0673500-01
Chr07	irgsp1_rep	CDS	28470369	28470402	.	-	1	Parent=Os07t0673500-01
Chr07	irgsp1_rep	CDS	28470198	28470302	.	-	0	Parent=Os07t0673500-01
Chr07	irgsp1_rep	CDS	28470112	28470126	.	-	0	Parent=Os07t0673500-01
Chr07	irgsp1_rep	three_prime_UTR	28469795	28470111	.	-	.	Parent=Os07t0673500-01
Chr07	irgsp1_rep	mRNA	28469782	28473899	.	-	.	ID=Os07t0673500-02;Name=Os07t0673500-02;Locus_id=Os07g0673500;CGSNL Gene Symbol=SRP33B;CGSNL Gene Name=SERINE/ARGININE-RICH PROTEIN 33B;Oryzabase Gene Symbol Synonym(s)=Os-SR33%2C OsSR33%2C SR33%2C OsSRp33b%2C Os-SRp33b;Oryzabase Gene Name Synonym(s)=Serine/Arginine-Rich Protein Splicing Factor 33b%2C Serine/Arginine-Rich Protein 33b%2C SR Protein 33b%2C SR subfamily protein 33b;Note=Similar to cDNA clone:001-208-C08%2C full insert sequence (Fragment).;Transcript_evidence=AK072839 (DDBJ%2C Best hit);ORF_evidence=B7EZ20 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023141I23;Oryzabase=22733;Expression=AK072839;TENOR=Os07t0673500-02;KEGG=Os07t0673500-02
Chr07	irgsp1_rep	five_prime_UTR	28473713	28473899	.	-	.	Parent=Os07t0673500-02
Chr07	irgsp1_rep	CDS	28473602	28473712	.	-	0	Parent=Os07t0673500-02
Chr07	irgsp1_rep	CDS	28473293	28473358	.	-	0	Parent=Os07t0673500-02
Chr07	irgsp1_rep	CDS	28473024	28473098	.	-	0	Parent=Os07t0673500-02
Chr07	irgsp1_rep	CDS	28472856	28472955	.	-	0	Parent=Os07t0673500-02
Chr07	irgsp1_rep	CDS	28472714	28472760	.	-	2	Parent=Os07t0673500-02
Chr07	irgsp1_rep	CDS	28472546	28472603	.	-	0	Parent=Os07t0673500-02
Chr07	irgsp1_rep	CDS	28471979	28472028	.	-	2	Parent=Os07t0673500-02
Chr07	irgsp1_rep	CDS	28471734	28471790	.	-	0	Parent=Os07t0673500-02
Chr07	irgsp1_rep	CDS	28471559	28471650	.	-	0	Parent=Os07t0673500-02
Chr07	irgsp1_rep	CDS	28471379	28471483	.	-	1	Parent=Os07t0673500-02
Chr07	irgsp1_rep	CDS	28470949	28470952	.	-	1	Parent=Os07t0673500-02
Chr07	irgsp1_rep	three_prime_UTR	28470862	28470948	.	-	.	Parent=Os07t0673500-02
Chr07	irgsp1_rep	three_prime_UTR	28470369	28470777	.	-	.	Parent=Os07t0673500-02
Chr07	irgsp1_rep	three_prime_UTR	28470198	28470302	.	-	.	Parent=Os07t0673500-02
Chr07	irgsp1_rep	three_prime_UTR	28469782	28470126	.	-	.	Parent=Os07t0673500-02
Chr07	irgsp1_rep	mRNA	28474473	28475210	.	-	.	ID=Os07t0673550-00;Name=Os07t0673550-00;Locus_id=Os07g0673550;Note=Photosystem II protein PsbX family protein.;Transcript_evidence=CU405795 (DDBJ%2C Best hit);ORF_evidence=NP_001175331.1 (RefSeq);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: membrane (GO:0016020);InterPro=Photosystem II PsbX (IPR009518);TENOR=Os07t0673550-00;KEGG=Os07t0673550-00
Chr07	irgsp1_rep	five_prime_UTR	28475135	28475210	.	-	.	Parent=Os07t0673550-00
Chr07	irgsp1_rep	CDS	28474781	28475134	.	-	0	Parent=Os07t0673550-00
Chr07	irgsp1_rep	three_prime_UTR	28474473	28474780	.	-	.	Parent=Os07t0673550-00
Chr07	irgsp1_rep	mRNA	28474722	28475309	.	+	.	ID=Os07t0673600-00;Name=Os07t0673600-00;Locus_id=Os07g0673600;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001060609.1 (RefSeq);TENOR=Os07t0673600-00;KEGG=Os07t0673600-00
Chr07	irgsp1_rep	CDS	28474722	28475309	.	+	0	Parent=Os07t0673600-00
Chr07	irgsp1_rep	mRNA	28476421	28479667	.	+	.	ID=Os07t0673700-01;Name=Os07t0673700-01;Locus_id=Os07g0673700;Oryzabase Gene Symbol Synonym(s)=OsFbox400%2C Os_F0541;Oryzabase Gene Name Synonym(s)=F-box protein 400;Note=Kelch-type beta propeller domain containing protein.;Transcript_evidence=AK071934 (DDBJ%2C Best hit),AK107556 (DDBJ%2C Best hit);ORF_evidence=B6UA54 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Kelch repeat type 1 (IPR006652),Galactose oxidase%2C beta-propeller (IPR015916);NIAS_FLcDNA=J013082K04,002-130-B04;Oryzabase=17174;TENOR=Os07t0673700-01
Chr07	irgsp1_rep	five_prime_UTR	28476421	28476444	.	+	.	Parent=Os07t0673700-01
Chr07	irgsp1_rep	CDS	28476445	28477584	.	+	0	Parent=Os07t0673700-01
Chr07	irgsp1_rep	three_prime_UTR	28477585	28477639	.	+	.	Parent=Os07t0673700-01
Chr07	irgsp1_rep	three_prime_UTR	28477777	28477863	.	+	.	Parent=Os07t0673700-01
Chr07	irgsp1_rep	three_prime_UTR	28479185	28479667	.	+	.	Parent=Os07t0673700-01
Chr07	irgsp1_rep	mRNA	28479888	28480536	.	-	.	ID=Os07t0673801-01;Name=Os07t0673801-01;Locus_id=Os07g0673801;Note=Conserved hypothetical protein.;Transcript_evidence=AK241770 (DDBJ%2C Best hit);ORF_evidence=NP_001175332.1 (RefSeq);NIAS_FLcDNA=J065205J11;TENOR=Os07t0673801-01;KEGG=Os07t0673801-01
Chr07	irgsp1_rep	five_prime_UTR	28480536	28480536	.	-	.	Parent=Os07t0673801-01
Chr07	irgsp1_rep	CDS	28480053	28480535	.	-	0	Parent=Os07t0673801-01
Chr07	irgsp1_rep	three_prime_UTR	28479888	28480052	.	-	.	Parent=Os07t0673801-01
Chr07	irgsp1_rep	mRNA	28484263	28485201	.	+	.	ID=Os07t0673900-01;Name=Os07t0673900-01;Locus_id=Os07g0673900;RAP-DB Gene Symbol Synonym(s)=HIGD2%2C OsHIGD2;RAP-DB Gene Name Synonym(s)=Hypoxia-Induced Gene Domain 2;Oryzabase Gene Symbol Synonym(s)=OsHIGD2%2C HIGD2;Oryzabase Gene Name Synonym(s)=hypoxia induced protein%2C Hypoxia-Induced Gene Domain 2%2C Hypoxia-Induced Gene Domain Protein 2;Note=Hypoxia induced protein%2C Early stage of hypoxia signalling;Transcript_evidence=AK120859,KY307892 (Pin Gaew 56%2C indica);ORF_evidence=A3BNC1(japonica),A2YPU9 (indica);InterPro=Hypoxia induced protein%2C domain (IPR007667);NIAS_FLcDNA=J023024E09;Manual Curation=June 23%2C 2017;Literature_PMID=27306456;Oryzabase=19835;TENOR=Os07t0673900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=mitochondrion (GO:0005739)
Chr07	irgsp1_rep	five_prime_UTR	28484263	28484349	.	+	.	Parent=Os07t0673900-01
Chr07	irgsp1_rep	CDS	28484350	28484419	.	+	0	Parent=Os07t0673900-01
Chr07	irgsp1_rep	CDS	28484532	28484622	.	+	2	Parent=Os07t0673900-01
Chr07	irgsp1_rep	CDS	28484755	28484899	.	+	1	Parent=Os07t0673900-01
Chr07	irgsp1_rep	three_prime_UTR	28484900	28485201	.	+	.	Parent=Os07t0673900-01
Chr07	irgsp1_rep	mRNA	28494715	28498019	.	+	.	ID=Os07t0674100-01;Name=Os07t0674100-01;Locus_id=Os07g0674100;Oryzabase Gene Symbol Synonym(s)=OsUXS6%2C UXS-6;Oryzabase Gene Name Synonym(s)=UDP-xylose synthase 6%2C UDP-glucuronic acid decarboxylase 6;Note=Hypothetical conserved gene.;Transcript_evidence=AK099614 (DDBJ%2C Best hit);ORF_evidence=B9FUU7 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013050E02;Oryzabase=18090;Expression=AK099614;TENOR=Os07t0674100-01;KEGG=Os07t0674100-01
Chr07	irgsp1_rep	five_prime_UTR	28494715	28494778	.	+	.	Parent=Os07t0674100-01
Chr07	irgsp1_rep	CDS	28494779	28495248	.	+	0	Parent=Os07t0674100-01
Chr07	irgsp1_rep	CDS	28495383	28495565	.	+	1	Parent=Os07t0674100-01
Chr07	irgsp1_rep	CDS	28495670	28495754	.	+	1	Parent=Os07t0674100-01
Chr07	irgsp1_rep	three_prime_UTR	28495755	28496103	.	+	.	Parent=Os07t0674100-01
Chr07	irgsp1_rep	three_prime_UTR	28496759	28496833	.	+	.	Parent=Os07t0674100-01
Chr07	irgsp1_rep	three_prime_UTR	28497282	28498019	.	+	.	Parent=Os07t0674100-01
Chr07	irgsp1_rep	mRNA	28494795	28497582	.	-	.	ID=Os07t0674150-00;Name=Os07t0674150-00;Locus_id=Os07g0674150;Note=Hypothetical protein.;Transcript_evidence=tplb0036f05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0674150-00
Chr07	irgsp1_rep	five_prime_UTR	28497582	28497582	.	-	.	Parent=Os07t0674150-00
Chr07	irgsp1_rep	CDS	28497266	28497581	.	-	0	Parent=Os07t0674150-00
Chr07	irgsp1_rep	CDS	28496750	28496823	.	-	2	Parent=Os07t0674150-00
Chr07	irgsp1_rep	CDS	28496023	28496094	.	-	0	Parent=Os07t0674150-00
Chr07	irgsp1_rep	CDS	28495687	28495752	.	-	0	Parent=Os07t0674150-00
Chr07	irgsp1_rep	CDS	28494884	28495579	.	-	0	Parent=Os07t0674150-00
Chr07	irgsp1_rep	three_prime_UTR	28494795	28494883	.	-	.	Parent=Os07t0674150-00
Chr07	irgsp1_rep	mRNA	28500920	28502362	.	+	.	ID=Os07t0674200-01;Name=Os07t0674200-01;Locus_id=Os07g0674200;Note=Similar to 60S ribosomal protein L22-2.;Transcript_evidence=AK058245 (DDBJ%2C Best hit);ORF_evidence=B6U998 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L22e (IPR002671);NIAS_FLcDNA=001-012-A06;Expression=AK058245;TENOR=Os07t0674200-01;KEGG=Os07t0674200-01
Chr07	irgsp1_rep	five_prime_UTR	28500920	28500996	.	+	.	Parent=Os07t0674200-01
Chr07	irgsp1_rep	CDS	28500997	28501244	.	+	0	Parent=Os07t0674200-01
Chr07	irgsp1_rep	CDS	28502007	28502151	.	+	1	Parent=Os07t0674200-01
Chr07	irgsp1_rep	three_prime_UTR	28502152	28502362	.	+	.	Parent=Os07t0674200-01
Chr07	irgsp1_rep	mRNA	28503062	28505494	.	-	.	ID=Os07t0674300-01;Name=Os07t0674300-01;Locus_id=Os07g0674300;Note=Protein kinase%2C ATP binding site domain containing protein.;Transcript_evidence=AK110511 (DDBJ%2C Best hit);ORF_evidence=A2YPV3 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=002-167-G02;Expression=AK110511;TENOR=Os07t0674300-01;KEGG=Os07t0674300-01
Chr07	irgsp1_rep	five_prime_UTR	28505446	28505494	.	-	.	Parent=Os07t0674300-01
Chr07	irgsp1_rep	CDS	28503232	28505445	.	-	0	Parent=Os07t0674300-01
Chr07	irgsp1_rep	three_prime_UTR	28503062	28503231	.	-	.	Parent=Os07t0674300-01
Chr07	irgsp1_rep	mRNA	28531925	28532701	.	+	.	ID=Os07t0674400-01;Name=Os07t0674400-01;Locus_id=Os07g0674400;Note=Pollen Ole e 1 allergen/extensin domain containing protein.;Transcript_evidence=AK119672 (DDBJ%2C Best hit);ORF_evidence=A2YPV4 (UniProt);InterPro=Pollen Ole e 1 allergen/extensin (IPR006041);NIAS_FLcDNA=002-156-G07;Expression=AK119672;TENOR=Os07t0674400-01;KEGG=Os07t0674400-01
Chr07	irgsp1_rep	five_prime_UTR	28531925	28531931	.	+	.	Parent=Os07t0674400-01
Chr07	irgsp1_rep	CDS	28531932	28532082	.	+	0	Parent=Os07t0674400-01
Chr07	irgsp1_rep	CDS	28532174	28532445	.	+	2	Parent=Os07t0674400-01
Chr07	irgsp1_rep	three_prime_UTR	28532446	28532701	.	+	.	Parent=Os07t0674400-01
Chr07	irgsp1_rep	mRNA	28534263	28535327	.	+	.	ID=Os07t0674500-01;Name=Os07t0674500-01;Locus_id=Os07g0674500;Note=Pollen Ole e 1 allergen/extensin domain containing protein.;Transcript_evidence=AK107802 (DDBJ%2C Best hit);ORF_evidence=A2YPV5 (UniProt);InterPro=Pollen Ole e 1 allergen/extensin (IPR006041);NIAS_FLcDNA=002-133-E04;Expression=AK107802;TENOR=Os07t0674500-01;KEGG=Os07t0674500-01
Chr07	irgsp1_rep	five_prime_UTR	28534263	28534322	.	+	.	Parent=Os07t0674500-01
Chr07	irgsp1_rep	CDS	28534323	28534494	.	+	0	Parent=Os07t0674500-01
Chr07	irgsp1_rep	CDS	28534925	28535190	.	+	2	Parent=Os07t0674500-01
Chr07	irgsp1_rep	three_prime_UTR	28535191	28535327	.	+	.	Parent=Os07t0674500-01
Chr07	irgsp1_rep	mRNA	28537617	28540104	.	+	.	ID=Os07t0674700-01;Name=Os07t0674700-01;Locus_id=Os07g0674700;Note=Similar to 60S ribosomal protein L18.;Transcript_evidence=AK066329 (DDBJ%2C Best hit);ORF_evidence=A2YPV7 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L18e (IPR000039),Ribosomal protein L18e/L15P (IPR021131),Ribosomal protein L18e%2C conserved site (IPR021132);NIAS_FLcDNA=J013060D13;Expression=AK066329;TENOR=Os07t0674700-01;KEGG=Os07t0674700-01
Chr07	irgsp1_rep	five_prime_UTR	28537617	28537646	.	+	.	Parent=Os07t0674700-01
Chr07	irgsp1_rep	CDS	28537647	28537649	.	+	0	Parent=Os07t0674700-01
Chr07	irgsp1_rep	CDS	28537729	28537818	.	+	0	Parent=Os07t0674700-01
Chr07	irgsp1_rep	CDS	28537917	28538069	.	+	0	Parent=Os07t0674700-01
Chr07	irgsp1_rep	CDS	28538153	28538335	.	+	0	Parent=Os07t0674700-01
Chr07	irgsp1_rep	CDS	28539715	28539873	.	+	0	Parent=Os07t0674700-01
Chr07	irgsp1_rep	three_prime_UTR	28539874	28540104	.	+	.	Parent=Os07t0674700-01
Chr07	irgsp1_rep	mRNA	28537719	28539955	.	-	.	ID=Os07t0674750-00;Name=Os07t0674750-00;Locus_id=Os07g0674750;Note=Non-protein coding transcript.;Transcript_evidence=BT019314 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0674750-00
Chr07	irgsp1_rep	exon	28539714	28539955	.	-	.	Parent=Os07t0674750-00
Chr07	irgsp1_rep	exon	28538159	28538334	.	-	.	Parent=Os07t0674750-00
Chr07	irgsp1_rep	exon	28537923	28538049	.	-	.	Parent=Os07t0674750-00
Chr07	irgsp1_rep	exon	28537719	28537826	.	-	.	Parent=Os07t0674750-00
Chr07	irgsp1_rep	mRNA	28540698	28541786	.	-	.	ID=Os07t0674800-01;Name=Os07t0674800-01;Locus_id=Os07g0674800;RAP-DB Gene Symbol Synonym(s)=ERF67%2C OsERF67;RAP-DB Gene Name Synonym(s)=ethylene response factor 67;CGSNL Gene Symbol=ERF67;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 67;Oryzabase Gene Symbol Synonym(s)=OsERF#067%2C OsERF067%2C OsERF67%2C AP2/EREBP#076%2C AP2/EREBP76;Oryzabase Gene Name Synonym(s)=ethylene response factor 67%2C APETALA2/ethylene-responsive element binding protein 76;Note=Group VII ethylene response factor%2C Submergence tolerance;Transcript_evidence=AK288040 (truncated),Inferred from literature;ORF_evidence=Q69J87;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-binding transcription factor activity (GO:0003700);InterPro=DNA-binding domain superfamily (IPR016177),AP2/ERF domain superfamily (IPR036955),AP2/ERF domain (IPR001471);NIAS_FLcDNA=J075143P16 (truncated);Manual Curation=June 10%2C 2020;Literature_PMID=30723146;Oryzabase=10580;TENOR=Os07t0674800-01;KEGG=Os07t0674800-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	28541680	28541786	.	-	.	Parent=Os07t0674800-01
Chr07	irgsp1_rep	CDS	28541511	28541679	.	-	0	Parent=Os07t0674800-01
Chr07	irgsp1_rep	CDS	28540935	28541416	.	-	2	Parent=Os07t0674800-01
Chr07	irgsp1_rep	three_prime_UTR	28540698	28540934	.	-	.	Parent=Os07t0674800-01
Chr07	irgsp1_rep	mRNA	28552641	28556625	.	+	.	ID=Os07t0675000-01;Name=Os07t0675000-01;Locus_id=Os07g0675000;Note=Similar to predicted protein.;Transcript_evidence=AK065843 (DDBJ%2C Best hit);ORF_evidence=NP_187337.2 (RefSeq);GO=Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Aminoglycoside phosphotransferase (IPR002575),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J013042C14;TENOR=Os07t0675000-01
Chr07	irgsp1_rep	five_prime_UTR	28552641	28552720	.	+	.	Parent=Os07t0675000-01
Chr07	irgsp1_rep	CDS	28552721	28552987	.	+	0	Parent=Os07t0675000-01
Chr07	irgsp1_rep	CDS	28553493	28553633	.	+	0	Parent=Os07t0675000-01
Chr07	irgsp1_rep	CDS	28554106	28554237	.	+	0	Parent=Os07t0675000-01
Chr07	irgsp1_rep	CDS	28554763	28554951	.	+	0	Parent=Os07t0675000-01
Chr07	irgsp1_rep	CDS	28555081	28555158	.	+	0	Parent=Os07t0675000-01
Chr07	irgsp1_rep	CDS	28555845	28555964	.	+	0	Parent=Os07t0675000-01
Chr07	irgsp1_rep	CDS	28556112	28556210	.	+	0	Parent=Os07t0675000-01
Chr07	irgsp1_rep	CDS	28556279	28556396	.	+	0	Parent=Os07t0675000-01
Chr07	irgsp1_rep	CDS	28556590	28556625	.	+	2	Parent=Os07t0675000-01
Chr07	irgsp1_rep	mRNA	28552648	28558965	.	+	.	ID=Os07t0675000-02;Name=Os07t0675000-02;Locus_id=Os07g0675000;Note=Protein kinase-like domain containing protein.;Transcript_evidence=AK073523 (DDBJ%2C Best hit);ORF_evidence=NP_187337.2 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995),Molecular Function: oxidoreductase activity%2C acting on the CH-CH group of donors (GO:0016627),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Aminoglycoside phosphotransferase (IPR002575),Acyl-CoA oxidase/dehydrogenase%2C type 1 (IPR006090),Acyl-CoA oxidase/dehydrogenase%2C central domain (IPR006091),Acyl-CoA dehydrogenase%2C N-terminal (IPR006092),Acyl-CoA dehydrogenase/oxidase C-terminal (IPR009075),Acyl-CoA dehydrogenase/oxidase (IPR009100),Protein kinase-like domain (IPR011009),Acyl-CoA dehydrogenase/oxidase%2C N-terminal (IPR013786);NIAS_FLcDNA=J033044B11;Expression=AK073523;TENOR=Os07t0675000-02;KEGG=Os07t0675000-02
Chr07	irgsp1_rep	five_prime_UTR	28552648	28552720	.	+	.	Parent=Os07t0675000-02
Chr07	irgsp1_rep	CDS	28552721	28552987	.	+	0	Parent=Os07t0675000-02
Chr07	irgsp1_rep	CDS	28553493	28553633	.	+	0	Parent=Os07t0675000-02
Chr07	irgsp1_rep	CDS	28554106	28554237	.	+	0	Parent=Os07t0675000-02
Chr07	irgsp1_rep	CDS	28554763	28554951	.	+	0	Parent=Os07t0675000-02
Chr07	irgsp1_rep	CDS	28555081	28555158	.	+	0	Parent=Os07t0675000-02
Chr07	irgsp1_rep	CDS	28555845	28555964	.	+	0	Parent=Os07t0675000-02
Chr07	irgsp1_rep	CDS	28556112	28556210	.	+	0	Parent=Os07t0675000-02
Chr07	irgsp1_rep	CDS	28556279	28556396	.	+	0	Parent=Os07t0675000-02
Chr07	irgsp1_rep	CDS	28556590	28556858	.	+	2	Parent=Os07t0675000-02
Chr07	irgsp1_rep	CDS	28557006	28557200	.	+	0	Parent=Os07t0675000-02
Chr07	irgsp1_rep	CDS	28557315	28557457	.	+	0	Parent=Os07t0675000-02
Chr07	irgsp1_rep	CDS	28557674	28557758	.	+	1	Parent=Os07t0675000-02
Chr07	irgsp1_rep	CDS	28557848	28558057	.	+	0	Parent=Os07t0675000-02
Chr07	irgsp1_rep	CDS	28558137	28558289	.	+	0	Parent=Os07t0675000-02
Chr07	irgsp1_rep	CDS	28558440	28558544	.	+	0	Parent=Os07t0675000-02
Chr07	irgsp1_rep	CDS	28558622	28558813	.	+	0	Parent=Os07t0675000-02
Chr07	irgsp1_rep	three_prime_UTR	28558814	28558965	.	+	.	Parent=Os07t0675000-02
Chr07	irgsp1_rep	mRNA	28556649	28558915	.	+	.	ID=Os07t0675000-03;Name=Os07t0675000-03;Locus_id=Os07g0675000;Note=Similar to IBR3 (IBA-RESPONSE 3)%3B acyl-CoA dehydrogenase/ oxidoreductase.;Transcript_evidence=AK058946 (DDBJ%2C Best hit);ORF_evidence=NP_187337.2 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995),Molecular Function: oxidoreductase activity%2C acting on the CH-CH group of donors (GO:0016627),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Acyl-CoA oxidase/dehydrogenase%2C central domain (IPR006091),Acyl-CoA dehydrogenase%2C N-terminal (IPR006092),Acyl-CoA dehydrogenase/oxidase (IPR009100),Acyl-CoA dehydrogenase/oxidase%2C N-terminal (IPR013786);NIAS_FLcDNA=001-009-H11;Expression=AK058946;TENOR=Os07t0675000-03;KEGG=Os07t0675000-03 (EC:1.3.99.3)
Chr07	irgsp1_rep	CDS	28556649	28556858	.	+	0	Parent=Os07t0675000-03
Chr07	irgsp1_rep	CDS	28557006	28557200	.	+	0	Parent=Os07t0675000-03
Chr07	irgsp1_rep	CDS	28557315	28557457	.	+	0	Parent=Os07t0675000-03
Chr07	irgsp1_rep	CDS	28557674	28557736	.	+	1	Parent=Os07t0675000-03
Chr07	irgsp1_rep	CDS	28557848	28557893	.	+	1	Parent=Os07t0675000-03
Chr07	irgsp1_rep	three_prime_UTR	28557894	28558057	.	+	.	Parent=Os07t0675000-03
Chr07	irgsp1_rep	three_prime_UTR	28558137	28558289	.	+	.	Parent=Os07t0675000-03
Chr07	irgsp1_rep	three_prime_UTR	28558440	28558544	.	+	.	Parent=Os07t0675000-03
Chr07	irgsp1_rep	three_prime_UTR	28558622	28558915	.	+	.	Parent=Os07t0675000-03
Chr07	irgsp1_rep	mRNA	28559086	28562956	.	-	.	ID=Os07t0675100-01;Name=Os07t0675100-01;Locus_id=Os07g0675100;CGSNL Gene Symbol=PME22;CGSNL Gene Name=PECTIN METHYLESTERASE 22;Oryzabase Gene Symbol Synonym(s)=OsPME22;Oryzabase Gene Name Synonym(s)=pectin methylesterase 22;Note=Similar to Pectin methylesterase isoform alpha (EC 3.1.1.11) (Fragment).;Transcript_evidence=AK101251 (DDBJ%2C Best hit);ORF_evidence=B8B5V1 (UniProt);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectinesterase inhibitor (IPR006501),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),Pectinesterase%2C active site (IPR018040);NIAS_FLcDNA=J033032F02;Oryzabase=13186;Expression=AK101251;TENOR=Os07t0675100-01;KEGG=Os07t0675100-01 (EC:3.1.1.11)
Chr07	irgsp1_rep	five_prime_UTR	28562888	28562956	.	-	.	Parent=Os07t0675100-01
Chr07	irgsp1_rep	CDS	28561843	28562887	.	-	0	Parent=Os07t0675100-01
Chr07	irgsp1_rep	CDS	28559310	28560004	.	-	2	Parent=Os07t0675100-01
Chr07	irgsp1_rep	three_prime_UTR	28559086	28559309	.	-	.	Parent=Os07t0675100-01
Chr07	irgsp1_rep	mRNA	28559646	28562451	.	+	.	ID=Os07t0675133-00;Name=Os07t0675133-00;Locus_id=Os07g0675133;Note=Hypothetical gene.;Transcript_evidence=BT085732 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0675133-00
Chr07	irgsp1_rep	CDS	28559646	28559991	.	+	0	Parent=Os07t0675133-00
Chr07	irgsp1_rep	CDS	28561827	28562451	.	+	2	Parent=Os07t0675133-00
Chr07	irgsp1_rep	mRNA	28565620	28566979	.	-	.	ID=Os07t0675166-01;Name=Os07t0675166-01;Locus_id=Os07g0675166;Note=Non-protein coding transcript.;Transcript_evidence=AK110786 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-171-C07;TENOR=Os07t0675166-01
Chr07	irgsp1_rep	exon	28565620	28566979	.	-	.	Parent=Os07t0675166-01
Chr07	irgsp1_rep	mRNA	28566115	28567042	.	+	.	ID=Os07t0675200-01;Name=Os07t0675200-01;Locus_id=Os07g0675200;Oryzabase Gene Symbol Synonym(s)=OsEnS-114;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 114;Note=Conserved hypothetical protein.;Transcript_evidence=AK063620 (DDBJ%2C Best hit);ORF_evidence=B8B5V2 (UniProt);NIAS_FLcDNA=001-118-E05;Oryzabase=18412;Expression=AK063620;TENOR=Os07t0675200-01;KEGG=Os07t0675200-01
Chr07	irgsp1_rep	five_prime_UTR	28566115	28566162	.	+	.	Parent=Os07t0675200-01
Chr07	irgsp1_rep	CDS	28566163	28567002	.	+	0	Parent=Os07t0675200-01
Chr07	irgsp1_rep	three_prime_UTR	28567003	28567042	.	+	.	Parent=Os07t0675200-01
Chr07	irgsp1_rep	mRNA	28584875	28593347	.	-	.	ID=Os07t0675400-01;Name=Os07t0675400-01;Locus_id=Os07g0675400;Note=Conserved hypothetical protein.;Transcript_evidence=AK065735 (DDBJ%2C Best hit);ORF_evidence=B8B5V4 (UniProt);NIAS_FLcDNA=J013038G02;TENOR=Os07t0675400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	28593146	28593347	.	-	.	Parent=Os07t0675400-01
Chr07	irgsp1_rep	CDS	28593005	28593145	.	-	0	Parent=Os07t0675400-01
Chr07	irgsp1_rep	CDS	28592704	28592808	.	-	0	Parent=Os07t0675400-01
Chr07	irgsp1_rep	three_prime_UTR	28592468	28592703	.	-	.	Parent=Os07t0675400-01
Chr07	irgsp1_rep	three_prime_UTR	28590317	28590466	.	-	.	Parent=Os07t0675400-01
Chr07	irgsp1_rep	three_prime_UTR	28590101	28590233	.	-	.	Parent=Os07t0675400-01
Chr07	irgsp1_rep	three_prime_UTR	28589490	28589595	.	-	.	Parent=Os07t0675400-01
Chr07	irgsp1_rep	three_prime_UTR	28589250	28589332	.	-	.	Parent=Os07t0675400-01
Chr07	irgsp1_rep	three_prime_UTR	28588636	28588781	.	-	.	Parent=Os07t0675400-01
Chr07	irgsp1_rep	three_prime_UTR	28588335	28588440	.	-	.	Parent=Os07t0675400-01
Chr07	irgsp1_rep	three_prime_UTR	28586636	28586695	.	-	.	Parent=Os07t0675400-01
Chr07	irgsp1_rep	three_prime_UTR	28584875	28585147	.	-	.	Parent=Os07t0675400-01
Chr07	irgsp1_rep	mRNA	28631688	28638611	.	-	.	ID=Os07t0676200-01;Name=Os07t0676200-01;Locus_id=Os07g0676200;Oryzabase Gene Name Synonym(s)=Ferredoxin-dependent Glu synthase;Note=Non-protein coding transcript.;Transcript_evidence=AK100834 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023123D17;Oryzabase=12470;TENOR=Os07t0676200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	exon	28638410	28638611	.	-	.	Parent=Os07t0676200-01
Chr07	irgsp1_rep	exon	28636688	28636816	.	-	.	Parent=Os07t0676200-01
Chr07	irgsp1_rep	exon	28635959	28636051	.	-	.	Parent=Os07t0676200-01
Chr07	irgsp1_rep	exon	28635627	28635723	.	-	.	Parent=Os07t0676200-01
Chr07	irgsp1_rep	exon	28634735	28634852	.	-	.	Parent=Os07t0676200-01
Chr07	irgsp1_rep	exon	28634552	28634652	.	-	.	Parent=Os07t0676200-01
Chr07	irgsp1_rep	exon	28634374	28634456	.	-	.	Parent=Os07t0676200-01
Chr07	irgsp1_rep	exon	28633129	28633217	.	-	.	Parent=Os07t0676200-01
Chr07	irgsp1_rep	exon	28632851	28633022	.	-	.	Parent=Os07t0676200-01
Chr07	irgsp1_rep	exon	28632538	28632630	.	-	.	Parent=Os07t0676200-01
Chr07	irgsp1_rep	exon	28632326	28632417	.	-	.	Parent=Os07t0676200-01
Chr07	irgsp1_rep	exon	28631688	28632251	.	-	.	Parent=Os07t0676200-01
Chr07	irgsp1_rep	mRNA	28631211	28638569	.	-	.	ID=Os07t0676200-02;Name=Os07t0676200-02;Locus_id=Os07g0676200;Oryzabase Gene Name Synonym(s)=Ferredoxin-dependent Glu synthase;Note=Conserved hypothetical protein.;Transcript_evidence=AK070225 (DDBJ%2C Best hit);ORF_evidence=B8B5V5 (UniProt);NIAS_FLcDNA=J023042K21;Oryzabase=12470;TENOR=Os07t0676200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	28638410	28638569	.	-	.	Parent=Os07t0676200-02
Chr07	irgsp1_rep	five_prime_UTR	28636137	28636829	.	-	.	Parent=Os07t0676200-02
Chr07	irgsp1_rep	CDS	28635959	28636136	.	-	0	Parent=Os07t0676200-02
Chr07	irgsp1_rep	CDS	28635627	28635723	.	-	2	Parent=Os07t0676200-02
Chr07	irgsp1_rep	CDS	28634834	28634852	.	-	1	Parent=Os07t0676200-02
Chr07	irgsp1_rep	three_prime_UTR	28634735	28634833	.	-	.	Parent=Os07t0676200-02
Chr07	irgsp1_rep	three_prime_UTR	28634374	28634652	.	-	.	Parent=Os07t0676200-02
Chr07	irgsp1_rep	three_prime_UTR	28632326	28633217	.	-	.	Parent=Os07t0676200-02
Chr07	irgsp1_rep	three_prime_UTR	28631985	28632251	.	-	.	Parent=Os07t0676200-02
Chr07	irgsp1_rep	three_prime_UTR	28631211	28631531	.	-	.	Parent=Os07t0676200-02
Chr07	irgsp1_rep	mRNA	28631054	28632563	.	-	.	ID=Os07t0676200-03;Name=Os07t0676200-03;Locus_id=Os07g0676200;Oryzabase Gene Name Synonym(s)=Ferredoxin-dependent Glu synthase;Note=Non-protein coding transcript.;Transcript_evidence=AK061503 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=006-309-E06;Oryzabase=12470;TENOR=Os07t0676200-03
Chr07	irgsp1_rep	exon	28632326	28632563	.	-	.	Parent=Os07t0676200-03
Chr07	irgsp1_rep	exon	28631985	28632251	.	-	.	Parent=Os07t0676200-03
Chr07	irgsp1_rep	exon	28631054	28631616	.	-	.	Parent=Os07t0676200-03
Chr07	irgsp1_rep	mRNA	28638872	28643060	.	+	.	ID=Os07t0676400-00;Name=Os07t0676400-00;Locus_id=Os07g0676400;Note=Hypothetical conserved gene.;Transcript_evidence=CT836080 (DDBJ%2C Best hit);ORF_evidence=B8B5V6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os07t0676400-00;KEGG=Os07t0676400-00
Chr07	irgsp1_rep	five_prime_UTR	28638872	28638873	.	+	.	Parent=Os07t0676400-00
Chr07	irgsp1_rep	CDS	28638874	28639333	.	+	0	Parent=Os07t0676400-00
Chr07	irgsp1_rep	CDS	28640831	28640913	.	+	2	Parent=Os07t0676400-00
Chr07	irgsp1_rep	CDS	28640994	28641108	.	+	0	Parent=Os07t0676400-00
Chr07	irgsp1_rep	CDS	28641186	28641294	.	+	2	Parent=Os07t0676400-00
Chr07	irgsp1_rep	CDS	28641394	28641516	.	+	1	Parent=Os07t0676400-00
Chr07	irgsp1_rep	CDS	28641597	28641651	.	+	1	Parent=Os07t0676400-00
Chr07	irgsp1_rep	three_prime_UTR	28641652	28641779	.	+	.	Parent=Os07t0676400-00
Chr07	irgsp1_rep	three_prime_UTR	28641879	28642656	.	+	.	Parent=Os07t0676400-00
Chr07	irgsp1_rep	three_prime_UTR	28642762	28643060	.	+	.	Parent=Os07t0676400-00
Chr07	irgsp1_rep	mRNA	28649695	28651518	.	+	.	ID=Os07t0676600-01;Name=Os07t0676600-01;Locus_id=Os07g0676600;RAP-DB Gene Symbol Synonym(s)=OsHLH61;Oryzabase Gene Symbol Synonym(s)=OsbHLH163%2C bHLH163%2C OsHLH61%2C HLH61;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 163%2C helix-loop-helix protein 61;Note=HLH (helix-loop-helix) protein%2C Mediation of defense to brown planthopper (BPH);Transcript_evidence=AK242001;ORF_evidence=Q8LII5;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Helix-loop-helix DNA-binding domain superfamily (IPR036638);NIAS_FLcDNA=J075101F12;Manual Curation=February 26%2C 2019;Literature_PMID=30796564;Oryzabase=15434;TENOR=Os07t0676600-01;KEGG=Os07t0676600-01;Subcellular location=cellular_component (GO:0005575) [whole cell (except chloroplast)]
Chr07	irgsp1_rep	five_prime_UTR	28649695	28649817	.	+	.	Parent=Os07t0676600-01
Chr07	irgsp1_rep	CDS	28649818	28649898	.	+	0	Parent=Os07t0676600-01
Chr07	irgsp1_rep	CDS	28650381	28650509	.	+	0	Parent=Os07t0676600-01
Chr07	irgsp1_rep	CDS	28650618	28650788	.	+	0	Parent=Os07t0676600-01
Chr07	irgsp1_rep	CDS	28651069	28651161	.	+	0	Parent=Os07t0676600-01
Chr07	irgsp1_rep	three_prime_UTR	28651162	28651518	.	+	.	Parent=Os07t0676600-01
Chr07	irgsp1_rep	mRNA	28653818	28655391	.	-	.	ID=Os07t0676700-01;Name=Os07t0676700-01;Locus_id=Os07g0676700;Note=Hypothetical protein.;Transcript_evidence=AK109983 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-159-D10;Expression=AK109983;TENOR=Os07t0676700-01;KEGG=Os07t0676700-01
Chr07	irgsp1_rep	five_prime_UTR	28655318	28655391	.	-	.	Parent=Os07t0676700-01
Chr07	irgsp1_rep	CDS	28654505	28655317	.	-	0	Parent=Os07t0676700-01
Chr07	irgsp1_rep	three_prime_UTR	28653818	28654504	.	-	.	Parent=Os07t0676700-01
Chr07	irgsp1_rep	mRNA	28654214	28656004	.	+	.	ID=Os07t0676800-01;Name=Os07t0676800-01;Locus_id=Os07g0676800;Note=Conserved hypothetical protein.;Transcript_evidence=AK061062 (DDBJ%2C Best hit);ORF_evidence=B8B5W5 (UniProt);NIAS_FLcDNA=006-206-A06;TENOR=Os07t0676800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	28654214	28654444	.	+	.	Parent=Os07t0676800-01
Chr07	irgsp1_rep	five_prime_UTR	28654555	28655035	.	+	.	Parent=Os07t0676800-01
Chr07	irgsp1_rep	CDS	28655036	28655245	.	+	0	Parent=Os07t0676800-01
Chr07	irgsp1_rep	three_prime_UTR	28655246	28656004	.	+	.	Parent=Os07t0676800-01
Chr07	irgsp1_rep	mRNA	28660188	28661792	.	+	.	ID=Os07t0676900-01;Name=Os07t0676900-01;Locus_id=Os07g0676900;Oryzabase Gene Symbol Synonym(s)=prx109%2C POX-2;Oryzabase Gene Name Synonym(s)=class III peroxidase 109%2C peroxidase 2;Note=Similar to Peroxidase (EC 1.11.1.7).;Transcript_evidence=AK072862 (DDBJ%2C Best hit);ORF_evidence=Q5U1I4 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J023143D07;Oryzabase=14631;Expression=AK072862;TENOR=Os07t0676900-01;KEGG=Os07t0676900-01 (EC:1.11.1.7)
Chr07	irgsp1_rep	five_prime_UTR	28660188	28660233	.	+	.	Parent=Os07t0676900-01
Chr07	irgsp1_rep	CDS	28660234	28660440	.	+	0	Parent=Os07t0676900-01
Chr07	irgsp1_rep	CDS	28660739	28660930	.	+	0	Parent=Os07t0676900-01
Chr07	irgsp1_rep	CDS	28661009	28661566	.	+	0	Parent=Os07t0676900-01
Chr07	irgsp1_rep	three_prime_UTR	28661567	28661792	.	+	.	Parent=Os07t0676900-01
Chr07	irgsp1_rep	mRNA	28669498	28671384	.	+	.	ID=Os07t0677100-01;Name=Os07t0677100-01;Locus_id=Os07g0677100;CGSNL Gene Symbol=POX8.1;CGSNL Gene Name=PEROXIDASE 8.1;Oryzabase Gene Symbol Synonym(s)=POX8.1%2C prx110%2C POX8;Oryzabase Gene Name Synonym(s)=Peroxidase8.1%2C Peroxidase 8.1%2C Peroxidase-8.1%2C class III peroxidase 110;Note=Peroxidase.;Transcript_evidence=AK101772 (DDBJ%2C Best hit);ORF_evidence=O22439 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J033064K15;Oryzabase=12489;Expression=AK101772;TENOR=Os07t0677100-01;KEGG=Os07t0677100-01
Chr07	irgsp1_rep	five_prime_UTR	28669498	28669583	.	+	.	Parent=Os07t0677100-01
Chr07	irgsp1_rep	CDS	28669584	28669781	.	+	0	Parent=Os07t0677100-01
Chr07	irgsp1_rep	CDS	28670229	28670420	.	+	0	Parent=Os07t0677100-01
Chr07	irgsp1_rep	CDS	28670523	28670688	.	+	0	Parent=Os07t0677100-01
Chr07	irgsp1_rep	CDS	28670773	28671164	.	+	2	Parent=Os07t0677100-01
Chr07	irgsp1_rep	three_prime_UTR	28671165	28671384	.	+	.	Parent=Os07t0677100-01
Chr07	irgsp1_rep	mRNA	28673754	28675336	.	+	.	ID=Os07t0677200-01;Name=Os07t0677200-01;Locus_id=Os07g0677200;CGSNL Gene Symbol=POX22.3;CGSNL Gene Name=PEROXIDASE 22.3;Oryzabase Gene Symbol Synonym(s)=POX22.3%2C OSPER%2C OsPOX%2C POX%2C Pir3%2C prx111%2C POX22%2C OsPOX1%2C POX1%2C OsPOX22.3%2C OsPR9%2C PR9;Oryzabase Gene Name Synonym(s)=Peroxidase22.3%2C Peroxidase 22.3%2C Peroxidase-22.3%2C Pathogen-induced Peroxidase%2C class III peroxidase 111%2C Peroxidase 2%2C Pathogenesis related gene 9;Note=Peroxidase.;Transcript_evidence=AK099382 (DDBJ%2C Best hit),AK073202 (DDBJ%2C Best hit),AK104710 (DDBJ%2C Best hit);ORF_evidence=Q43006 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J033069K12,J033023C17,001-037-F01;Oryzabase=12488;Expression=AK099382;TENOR=Os07t0677200-01;KEGG=Os07t0677200-01
Chr07	irgsp1_rep	five_prime_UTR	28673754	28673821	.	+	.	Parent=Os07t0677200-01
Chr07	irgsp1_rep	CDS	28673822	28674037	.	+	0	Parent=Os07t0677200-01
Chr07	irgsp1_rep	CDS	28674134	28674310	.	+	0	Parent=Os07t0677200-01
Chr07	irgsp1_rep	CDS	28674397	28674562	.	+	0	Parent=Os07t0677200-01
Chr07	irgsp1_rep	CDS	28674677	28675071	.	+	2	Parent=Os07t0677200-01
Chr07	irgsp1_rep	three_prime_UTR	28675072	28675336	.	+	.	Parent=Os07t0677200-01
Chr07	irgsp1_rep	mRNA	28674497	28675351	.	+	.	ID=Os07t0677200-02;Name=Os07t0677200-02;Locus_id=Os07g0677200;CGSNL Gene Symbol=POX22.3;CGSNL Gene Name=PEROXIDASE 22.3;Oryzabase Gene Symbol Synonym(s)=POX22.3%2C OSPER%2C OsPOX%2C POX%2C Pir3%2C prx111%2C POX22%2C OsPOX1%2C POX1%2C OsPOX22.3%2C OsPR9%2C PR9;Oryzabase Gene Name Synonym(s)=Peroxidase22.3%2C Peroxidase 22.3%2C Peroxidase-22.3%2C Pathogen-induced Peroxidase%2C class III peroxidase 111%2C Peroxidase 2%2C Pathogenesis related gene 9;Note=Similar to Peroxidase.;Transcript_evidence=AK122028 (DDBJ%2C Best hit);ORF_evidence=Q43006 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793);NIAS_FLcDNA=J033112F05;Oryzabase=12488;Expression=AK122028;TENOR=Os07t0677200-02;KEGG=Os07t0677200-02
Chr07	irgsp1_rep	five_prime_UTR	28674497	28674498	.	+	.	Parent=Os07t0677200-02
Chr07	irgsp1_rep	CDS	28674499	28674562	.	+	0	Parent=Os07t0677200-02
Chr07	irgsp1_rep	CDS	28674677	28675071	.	+	2	Parent=Os07t0677200-02
Chr07	irgsp1_rep	three_prime_UTR	28675072	28675351	.	+	.	Parent=Os07t0677200-02
Chr07	irgsp1_rep	mRNA	28678458	28680010	.	+	.	ID=Os07t0677300-01;Name=Os07t0677300-01;Locus_id=Os07g0677300;CGSNL Gene Symbol=POXGX9;CGSNL Gene Name=PEROXIDASE GX9;Oryzabase Gene Symbol Synonym(s)=POXgX9%2C OsPOXgX9%2C prx112;Oryzabase Gene Name Synonym(s)=PeroxidasegX9%2C Peroxidase gX9%2C Peroxidase-gX9%2C class III peroxidase 112;Note=Peroxidase.;Transcript_evidence=AK073616 (DDBJ%2C Best hit);ORF_evidence=Q0D3N0 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J033051E10;Oryzabase=12491;Expression=AK073616;TENOR=Os07t0677300-01;KEGG=Os07t0677300-01
Chr07	irgsp1_rep	five_prime_UTR	28678458	28678476	.	+	.	Parent=Os07t0677300-01
Chr07	irgsp1_rep	CDS	28678477	28678686	.	+	0	Parent=Os07t0677300-01
Chr07	irgsp1_rep	CDS	28678802	28678978	.	+	0	Parent=Os07t0677300-01
Chr07	irgsp1_rep	CDS	28679086	28679251	.	+	0	Parent=Os07t0677300-01
Chr07	irgsp1_rep	CDS	28679339	28679730	.	+	2	Parent=Os07t0677300-01
Chr07	irgsp1_rep	three_prime_UTR	28679731	28680010	.	+	.	Parent=Os07t0677300-01
Chr07	irgsp1_rep	mRNA	28684118	28685591	.	-	.	ID=Os07t0677350-01;Name=Os07t0677350-01;Locus_id=Os07g0677350;Note=Hypothetical gene.;Transcript_evidence=AK241546 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065176G06;TENOR=Os07t0677350-01;KEGG=Os07t0677350-01
Chr07	irgsp1_rep	five_prime_UTR	28685186	28685591	.	-	.	Parent=Os07t0677350-01
Chr07	irgsp1_rep	CDS	28685119	28685185	.	-	0	Parent=Os07t0677350-01
Chr07	irgsp1_rep	CDS	28684836	28685004	.	-	2	Parent=Os07t0677350-01
Chr07	irgsp1_rep	CDS	28684629	28684734	.	-	1	Parent=Os07t0677350-01
Chr07	irgsp1_rep	three_prime_UTR	28684561	28684628	.	-	.	Parent=Os07t0677350-01
Chr07	irgsp1_rep	three_prime_UTR	28684118	28684406	.	-	.	Parent=Os07t0677350-01
Chr07	irgsp1_rep	mRNA	28684142	28685862	.	+	.	ID=Os07t0677400-00;Name=Os07t0677400-00;Locus_id=Os07g0677400;CGSNL Gene Symbol=POX5.1;CGSNL Gene Name=PEROXIDASE 5.1;Oryzabase Gene Symbol Synonym(s)=POX5.1%2C prx113%2C POX5;Oryzabase Gene Name Synonym(s)=Peroxidase5.1%2C Peroxidase 5.1%2C Peroxidase-5.1%2C class III peroxidase 113;Note=Peroxidase.;Transcript_evidence=AF014469 (DDBJ%2C Best hit);ORF_evidence=Q9LKY9 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);Oryzabase=12490;Expression=AF014469;TENOR=Os07t0677400-00;KEGG=Os07t0677400-00
Chr07	irgsp1_rep	five_prime_UTR	28684142	28684199	.	+	.	Parent=Os07t0677400-00
Chr07	irgsp1_rep	CDS	28684200	28684406	.	+	0	Parent=Os07t0677400-00
Chr07	irgsp1_rep	CDS	28684561	28684734	.	+	0	Parent=Os07t0677400-00
Chr07	irgsp1_rep	CDS	28684836	28685004	.	+	0	Parent=Os07t0677400-00
Chr07	irgsp1_rep	CDS	28685119	28685513	.	+	2	Parent=Os07t0677400-00
Chr07	irgsp1_rep	three_prime_UTR	28685514	28685862	.	+	.	Parent=Os07t0677400-00
Chr07	irgsp1_rep	mRNA	28688443	28690371	.	+	.	ID=Os07t0677500-00;Name=Os07t0677500-00;Locus_id=Os07g0677500;CGSNL Gene Symbol=POX3006;CGSNL Gene Name=PEROXIDASE 3006;Oryzabase Gene Symbol Synonym(s)=POX3006%2C prx114%2C Osprx114%2C PO-C1%2C POC-1%2C POC1%2C OsPOC1%2C Prx14%2C OsPrx14;Oryzabase Gene Name Synonym(s)=Peroxidase3006%2C Peroxidase 3006%2C Peroxidase-3006%2C class III peroxidase 114;Note=Similar to Peroxidase precursor (EC 1.11.1.7).;Transcript_evidence=AF247700 (DDBJ%2C Best hit);ORF_evidence=Q43212 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);Oryzabase=12492;Expression=AF247700;TENOR=Os07t0677500-00;KEGG=Os07t0677500-00 (EC:1.11.1.7)
Chr07	irgsp1_rep	five_prime_UTR	28688443	28688512	.	+	.	Parent=Os07t0677500-00
Chr07	irgsp1_rep	CDS	28688513	28688716	.	+	0	Parent=Os07t0677500-00
Chr07	irgsp1_rep	CDS	28688971	28689147	.	+	0	Parent=Os07t0677500-00
Chr07	irgsp1_rep	CDS	28689434	28689599	.	+	0	Parent=Os07t0677500-00
Chr07	irgsp1_rep	CDS	28689671	28690059	.	+	2	Parent=Os07t0677500-00
Chr07	irgsp1_rep	three_prime_UTR	28690060	28690371	.	+	.	Parent=Os07t0677500-00
Chr07	irgsp1_rep	mRNA	28690629	28692640	.	-	.	ID=Os07t0677600-01;Name=Os07t0677600-01;Locus_id=Os07g0677600;Oryzabase Gene Symbol Synonym(s)=prx115;Oryzabase Gene Name Synonym(s)=class III peroxidase 115;Note=Similar to Cationic peroxidase.;Transcript_evidence=AK060984 (DDBJ%2C Best hit);ORF_evidence=NP_001147443.1 (RefSeq);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=006-203-B02;Oryzabase=14632;Expression=AK060984;TENOR=Os07t0677600-01;KEGG=Os07t0677600-01
Chr07	irgsp1_rep	five_prime_UTR	28692571	28692640	.	-	.	Parent=Os07t0677600-01
Chr07	irgsp1_rep	CDS	28692364	28692570	.	-	0	Parent=Os07t0677600-01
Chr07	irgsp1_rep	CDS	28692068	28692262	.	-	0	Parent=Os07t0677600-01
Chr07	irgsp1_rep	CDS	28690820	28691383	.	-	0	Parent=Os07t0677600-01
Chr07	irgsp1_rep	three_prime_UTR	28690629	28690819	.	-	.	Parent=Os07t0677600-01
Chr07	irgsp1_rep	mRNA	28698841	28700885	.	+	.	ID=Os07t0677900-01;Name=Os07t0677900-01;Locus_id=Os07g0677900;Note=Protein of unknown function DUF827%2C plant family protein.;Transcript_evidence=AK103884 (DDBJ%2C Best hit),AK106293 (DDBJ%2C Best hit);ORF_evidence=A2YPX8 (UniProt);InterPro=Protein of unknown function DUF827%2C plant (IPR008545);NIAS_FLcDNA=J033150B10,002-101-B08;Expression=AK103884;TENOR=Os07t0677900-01;KEGG=Os07t0677900-01
Chr07	irgsp1_rep	five_prime_UTR	28698841	28698861	.	+	.	Parent=Os07t0677900-01
Chr07	irgsp1_rep	CDS	28698862	28699032	.	+	0	Parent=Os07t0677900-01
Chr07	irgsp1_rep	CDS	28699259	28700647	.	+	0	Parent=Os07t0677900-01
Chr07	irgsp1_rep	three_prime_UTR	28700648	28700885	.	+	.	Parent=Os07t0677900-01
Chr07	irgsp1_rep	mRNA	28710749	28712470	.	+	.	ID=Os07t0678300-01;Name=Os07t0678300-01;Locus_id=Os07g0678300;CGSNL Gene Symbol=CIPK29;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 29;Oryzabase Gene Symbol Synonym(s)=OsCIPK29;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 29;Note=Similar to CBL-interacting protein kinase 29.;Transcript_evidence=AK111746 (DDBJ%2C Best hit);ORF_evidence=Q7XIW5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),NAF domain (IPR004041),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),NAF/FISL domain (IPR018451),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023047E15;Oryzabase=7417;TENOR=Os07t0678300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	28710749	28710914	.	+	.	Parent=Os07t0678300-01
Chr07	irgsp1_rep	CDS	28710915	28712246	.	+	0	Parent=Os07t0678300-01
Chr07	irgsp1_rep	three_prime_UTR	28712247	28712470	.	+	.	Parent=Os07t0678300-01
Chr07	irgsp1_rep	mRNA	28726817	28729527	.	-	.	ID=Os07t0678600-01;Name=Os07t0678600-01;Locus_id=Os07g0678600;RAP-DB Gene Symbol Synonym(s)=OsCIPK2;RAP-DB Gene Name Synonym(s)=Calcineurin B-like interacting protein kinase 2;CGSNL Gene Symbol=CIPK02;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 2;Oryzabase Gene Symbol Synonym(s)=OsCIPK02%2C CIPK2%2C OsCIPK2;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 2;Note=Calcineurin B-like protein interacting protein kinase;Transcript_evidence=AK072868;ORF_evidence=Q7X996;GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),Protein kinase domain (IPR000719),NAF/FISL domain (IPR018451),NAF domain (IPR004041),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J023141O10;Manual Curation=July 29%2C 2019;Literature_PMID=31349588;Oryzabase=7389;Expression=AK072868;TENOR=Os07t0678600-01;KEGG=Os07t0678600-01 (EC:2.7.11.1)
Chr07	irgsp1_rep	five_prime_UTR	28729320	28729527	.	-	.	Parent=Os07t0678600-01
Chr07	irgsp1_rep	five_prime_UTR	28728401	28728714	.	-	.	Parent=Os07t0678600-01
Chr07	irgsp1_rep	CDS	28727069	28728400	.	-	0	Parent=Os07t0678600-01
Chr07	irgsp1_rep	three_prime_UTR	28726817	28727068	.	-	.	Parent=Os07t0678600-01
Chr07	irgsp1_rep	mRNA	28726958	28728253	.	-	.	ID=Os07t0678600-02;Name=Os07t0678600-02;Locus_id=Os07g0678600;CGSNL Gene Symbol=CIPK02;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 2;Oryzabase Gene Symbol Synonym(s)=OsCIPK02%2C CIPK2%2C OsCIPK2;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 2;Note=Similar to cDNA clone:J023141O10%2C full insert sequence.;Transcript_evidence=AK058819 (DDBJ%2C Best hit);ORF_evidence=B3GLZ6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),NAF domain (IPR004041),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),NAF/FISL domain (IPR018451),Tyrosine-protein kinase%2C catalytic domain (IPR020635),Calcium/calmodulin-dependent/calcium-dependent protein kinase (IPR020636);NIAS_FLcDNA=001-003-G04;Oryzabase=7389;Expression=AK058819;TENOR=Os07t0678600-02;KEGG=Os07t0678600-02 (EC:2.7.11.1)
Chr07	irgsp1_rep	CDS	28727193	28728253	.	-	0	Parent=Os07t0678600-02
Chr07	irgsp1_rep	CDS	28727155	28727179	.	-	1	Parent=Os07t0678600-02
Chr07	irgsp1_rep	three_prime_UTR	28726958	28727154	.	-	.	Parent=Os07t0678600-02
Chr07	irgsp1_rep	mRNA	28726892	28728204	.	-	.	ID=Os07t0678600-03;Name=Os07t0678600-03;Locus_id=Os07g0678600;CGSNL Gene Symbol=CIPK02;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 2;Oryzabase Gene Symbol Synonym(s)=OsCIPK02%2C CIPK2%2C OsCIPK2;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 2;Note=Similar to cDNA clone:J023141O10%2C full insert sequence.;Transcript_evidence=AK059418 (DDBJ%2C Best hit);ORF_evidence=B3GLZ6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),NAF domain (IPR004041),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635),Calcium/calmodulin-dependent/calcium-dependent protein kinase (IPR020636);NIAS_FLcDNA=001-027-D08;Oryzabase=7389;Expression=AK059418;TENOR=Os07t0678600-03;KEGG=Os07t0678600-03 (EC:2.7.11.1)
Chr07	irgsp1_rep	five_prime_UTR	28728203	28728204	.	-	.	Parent=Os07t0678600-03
Chr07	irgsp1_rep	CDS	28727547	28728202	.	-	0	Parent=Os07t0678600-03
Chr07	irgsp1_rep	CDS	28727069	28727462	.	-	1	Parent=Os07t0678600-03
Chr07	irgsp1_rep	three_prime_UTR	28726892	28727068	.	-	.	Parent=Os07t0678600-03
Chr07	irgsp1_rep	mRNA	28731847	28732333	.	+	.	ID=Os07t0678700-01;Name=Os07t0678700-01;Locus_id=Os07g0678700;Note=Hypothetical gene.;Transcript_evidence=AK109654 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-140-E04;TENOR=Os07t0678700-01
Chr07	irgsp1_rep	five_prime_UTR	28731847	28731848	.	+	.	Parent=Os07t0678700-01
Chr07	irgsp1_rep	CDS	28731849	28732166	.	+	0	Parent=Os07t0678700-01
Chr07	irgsp1_rep	three_prime_UTR	28732167	28732333	.	+	.	Parent=Os07t0678700-01
Chr07	irgsp1_rep	mRNA	28741888	28745900	.	-	.	ID=Os07t0679000-01;Name=Os07t0679000-01;Locus_id=Os07g0679000;CGSNL Gene Symbol=HAK9;CGSNL Gene Name=HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 9;Oryzabase Gene Symbol Synonym(s)=OsHAK9;Oryzabase Gene Name Synonym(s)=High-affinity Potassium(K+) Transporter 9%2C Probable potassium transporter 9;Note=Similar to Potassium transporter 2 (AtPOT2) (AtKUP2) (AtKT2).;Transcript_evidence=AK070738 (DDBJ%2C Best hit);ORF_evidence=Q1T761 (UniProt);GO=Biological Process: potassium ion transmembrane transport (GO:0071805),Cellular Component: membrane (GO:0016020),Molecular Function: potassium ion transmembrane transporter activity (GO:0015079);InterPro=K+ potassium transporter (IPR003855);NIAS_FLcDNA=J023062E24;Oryzabase=8663;Expression=AK070738;TENOR=Os07t0679000-01;KEGG=Os07t0679000-01
Chr07	irgsp1_rep	five_prime_UTR	28745731	28745900	.	-	.	Parent=Os07t0679000-01
Chr07	irgsp1_rep	five_prime_UTR	28745611	28745633	.	-	.	Parent=Os07t0679000-01
Chr07	irgsp1_rep	CDS	28745572	28745610	.	-	0	Parent=Os07t0679000-01
Chr07	irgsp1_rep	CDS	28745227	28745461	.	-	0	Parent=Os07t0679000-01
Chr07	irgsp1_rep	CDS	28744858	28745103	.	-	2	Parent=Os07t0679000-01
Chr07	irgsp1_rep	CDS	28744681	28744734	.	-	2	Parent=Os07t0679000-01
Chr07	irgsp1_rep	CDS	28744058	28744318	.	-	2	Parent=Os07t0679000-01
Chr07	irgsp1_rep	CDS	28743886	28743938	.	-	2	Parent=Os07t0679000-01
Chr07	irgsp1_rep	CDS	28743666	28743789	.	-	0	Parent=Os07t0679000-01
Chr07	irgsp1_rep	CDS	28743288	28743542	.	-	2	Parent=Os07t0679000-01
Chr07	irgsp1_rep	CDS	28742003	28743102	.	-	2	Parent=Os07t0679000-01
Chr07	irgsp1_rep	three_prime_UTR	28741888	28742002	.	-	.	Parent=Os07t0679000-01
Chr07	irgsp1_rep	mRNA	28742030	28743109	.	+	.	ID=Os07t0679050-00;Name=Os07t0679050-00;Locus_id=Os07g0679050;Note=Hypothetical protein.;Transcript_evidence=EU968841 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0679050-00
Chr07	irgsp1_rep	CDS	28742030	28743109	.	+	0	Parent=Os07t0679050-00
Chr07	irgsp1_rep	mRNA	28752679	28753308	.	-	.	ID=Os07t0679100-00;Name=Os07t0679100-00;Locus_id=Os07g0679100;Oryzabase Gene Symbol Synonym(s)=OsOFP32;Oryzabase Gene Name Synonym(s)=OVATE family protein 32;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XIV7 (UniProt);Oryzabase=18328;TENOR=Os07t0679100-00
Chr07	irgsp1_rep	CDS	28752679	28753308	.	-	0	Parent=Os07t0679100-00
Chr07	irgsp1_rep	mRNA	28759461	28760721	.	+	.	ID=Os07t0679200-01;Name=Os07t0679200-01;Locus_id=Os07g0679200;Oryzabase Gene Symbol Synonym(s)=OsOFP16%2C OsOFP24;Oryzabase Gene Name Synonym(s)=OVATE family protein 16%2C ovate family protein 24%2C OVATE-domain containing protein 24;Note=Protein of unknown function DUF623%2C plant domain containing protein.;Transcript_evidence=AK106500 (DDBJ%2C Best hit);ORF_evidence=NP_001150899.1 (RefSeq);InterPro=Domain of unknown function DUF623 (IPR006458);NIAS_FLcDNA=002-105-E10;Oryzabase=18312;Expression=AK106500;TENOR=Os07t0679200-01;KEGG=Os07t0679200-01
Chr07	irgsp1_rep	five_prime_UTR	28759461	28759609	.	+	.	Parent=Os07t0679200-01
Chr07	irgsp1_rep	CDS	28759610	28760602	.	+	0	Parent=Os07t0679200-01
Chr07	irgsp1_rep	three_prime_UTR	28760603	28760721	.	+	.	Parent=Os07t0679200-01
Chr07	irgsp1_rep	mRNA	28759906	28760568	.	-	.	ID=Os07t0679250-00;Name=Os07t0679250-00;Locus_id=Os07g0679250;Note=Hypothetical gene.;Transcript_evidence=AK330759 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0679250-00
Chr07	irgsp1_rep	five_prime_UTR	28760422	28760568	.	-	.	Parent=Os07t0679250-00
Chr07	irgsp1_rep	CDS	28760155	28760421	.	-	0	Parent=Os07t0679250-00
Chr07	irgsp1_rep	CDS	28759906	28759975	.	-	0	Parent=Os07t0679250-00
Chr07	irgsp1_rep	mRNA	28764426	28769160	.	+	.	ID=Os07t0679300-01;Name=Os07t0679300-01;Locus_id=Os07g0679300;Oryzabase Gene Symbol Synonym(s)=alpha-Gal III;Oryzabase Gene Name Synonym(s)=alpha-galactosidase III;Note=Similar to Alpha-galactosidase precursor (EC 3.2.1.22) (Melibiase) (Alpha-D- galactoside galactohydrolase).;Transcript_evidence=AK099229 (DDBJ%2C Best hit),AK065079 (DDBJ%2C Best hit);ORF_evidence=Q9LYL2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C clan GH-D (IPR000111),Glycoside hydrolase%2C family 27 (IPR002241),Glycosyl hydrolase%2C family 13%2C all-beta (IPR013780),Aldolase-type TIM barrel (IPR013785),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J013093O17,J013001K24;Oryzabase=20532;Expression=AK099229;TENOR=Os07t0679300-01;KEGG=Os07t0679300-01 (EC:3.2.1.22)
Chr07	irgsp1_rep	five_prime_UTR	28764426	28764513	.	+	.	Parent=Os07t0679300-01
Chr07	irgsp1_rep	CDS	28764514	28764707	.	+	0	Parent=Os07t0679300-01
Chr07	irgsp1_rep	CDS	28764861	28764919	.	+	1	Parent=Os07t0679300-01
Chr07	irgsp1_rep	CDS	28765289	28765345	.	+	2	Parent=Os07t0679300-01
Chr07	irgsp1_rep	CDS	28765436	28765470	.	+	2	Parent=Os07t0679300-01
Chr07	irgsp1_rep	CDS	28765701	28765804	.	+	0	Parent=Os07t0679300-01
Chr07	irgsp1_rep	CDS	28765903	28765975	.	+	1	Parent=Os07t0679300-01
Chr07	irgsp1_rep	CDS	28766073	28766131	.	+	0	Parent=Os07t0679300-01
Chr07	irgsp1_rep	CDS	28766234	28766299	.	+	1	Parent=Os07t0679300-01
Chr07	irgsp1_rep	CDS	28766393	28766476	.	+	1	Parent=Os07t0679300-01
Chr07	irgsp1_rep	CDS	28766573	28766637	.	+	1	Parent=Os07t0679300-01
Chr07	irgsp1_rep	CDS	28766730	28766810	.	+	2	Parent=Os07t0679300-01
Chr07	irgsp1_rep	CDS	28767098	28767190	.	+	2	Parent=Os07t0679300-01
Chr07	irgsp1_rep	CDS	28767654	28767712	.	+	2	Parent=Os07t0679300-01
Chr07	irgsp1_rep	CDS	28768310	28768450	.	+	0	Parent=Os07t0679300-01
Chr07	irgsp1_rep	CDS	28768792	28768899	.	+	0	Parent=Os07t0679300-01
Chr07	irgsp1_rep	three_prime_UTR	28768900	28769160	.	+	.	Parent=Os07t0679300-01
Chr07	irgsp1_rep	mRNA	28770335	28772979	.	-	.	ID=Os07t0679400-01;Name=Os07t0679400-01;Locus_id=Os07g0679400;CGSNL Gene Symbol=NTP8;CGSNL Gene Name=NUCLEOTIDYL TRANSFERASE PROTEIN 8;Oryzabase Gene Symbol Synonym(s)=OsNTP8;Oryzabase Gene Name Synonym(s)=nucleotidyl transferase protein 8;Note=Conserved hypothetical protein.;Transcript_evidence=AK064577 (DDBJ%2C Best hit);ORF_evidence=B9FUW6 (UniProt);NIAS_FLcDNA=002-112-E08;Oryzabase=21891;TENOR=Os07t0679400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	28772979	28772979	.	-	.	Parent=Os07t0679400-01
Chr07	irgsp1_rep	CDS	28772130	28772978	.	-	0	Parent=Os07t0679400-01
Chr07	irgsp1_rep	CDS	28771842	28772024	.	-	0	Parent=Os07t0679400-01
Chr07	irgsp1_rep	CDS	28770781	28771475	.	-	0	Parent=Os07t0679400-01
Chr07	irgsp1_rep	CDS	28770576	28770669	.	-	1	Parent=Os07t0679400-01
Chr07	irgsp1_rep	three_prime_UTR	28770335	28770575	.	-	.	Parent=Os07t0679400-01
Chr07	irgsp1_rep	mRNA	28779796	28783937	.	-	.	ID=Os07t0679500-01;Name=Os07t0679500-01;Locus_id=Os07g0679500;CGSNL Gene Symbol=BZIP61;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 61;Oryzabase Gene Symbol Synonym(s)=OsbZIP61;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 61;Note=Similar to Transcription factor RF2b.;Transcript_evidence=AK102562 (DDBJ%2C Best hit);ORF_evidence=B6TIQ5 (UniProt);NIAS_FLcDNA=J033097I23;Oryzabase=10142;TENOR=Os07t0679500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	28783907	28783937	.	-	.	Parent=Os07t0679500-01
Chr07	irgsp1_rep	CDS	28783798	28783906	.	-	0	Parent=Os07t0679500-01
Chr07	irgsp1_rep	CDS	28783371	28783742	.	-	2	Parent=Os07t0679500-01
Chr07	irgsp1_rep	CDS	28781958	28781965	.	-	2	Parent=Os07t0679500-01
Chr07	irgsp1_rep	three_prime_UTR	28781833	28781957	.	-	.	Parent=Os07t0679500-01
Chr07	irgsp1_rep	three_prime_UTR	28781061	28781145	.	-	.	Parent=Os07t0679500-01
Chr07	irgsp1_rep	three_prime_UTR	28779796	28780531	.	-	.	Parent=Os07t0679500-01
Chr07	irgsp1_rep	mRNA	28786471	28793002	.	-	.	ID=Os07t0679700-01;Name=Os07t0679700-01;Locus_id=Os07g0679700;Oryzabase Gene Symbol Synonym(s)=OsVAL2%2C VAL2%2C DLN195%2C OsDLN195;Oryzabase Gene Name Synonym(s)=VP1/ABI3-LIKE 2%2C DLN repressor 195%2C DLN motif protein 195;Note=Transcriptional factor B3 family protein.;Transcript_evidence=AK101356 (DDBJ%2C Best hit);ORF_evidence=D9ZIL3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Transcriptional factor B3 (IPR003340),Zinc finger%2C CW-type (IPR011124),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=J033035A04;Oryzabase=20529;Expression=AK101356;TENOR=Os07t0679700-01;KEGG=Os07t0679700-01
Chr07	irgsp1_rep	five_prime_UTR	28792740	28793002	.	-	.	Parent=Os07t0679700-01
Chr07	irgsp1_rep	CDS	28792582	28792739	.	-	0	Parent=Os07t0679700-01
Chr07	irgsp1_rep	CDS	28791671	28791752	.	-	1	Parent=Os07t0679700-01
Chr07	irgsp1_rep	CDS	28791478	28791579	.	-	0	Parent=Os07t0679700-01
Chr07	irgsp1_rep	CDS	28790693	28791411	.	-	0	Parent=Os07t0679700-01
Chr07	irgsp1_rep	CDS	28790421	28790517	.	-	1	Parent=Os07t0679700-01
Chr07	irgsp1_rep	CDS	28789661	28789835	.	-	0	Parent=Os07t0679700-01
Chr07	irgsp1_rep	CDS	28789112	28789188	.	-	2	Parent=Os07t0679700-01
Chr07	irgsp1_rep	CDS	28788590	28789000	.	-	0	Parent=Os07t0679700-01
Chr07	irgsp1_rep	CDS	28788413	28788462	.	-	0	Parent=Os07t0679700-01
Chr07	irgsp1_rep	CDS	28788059	28788172	.	-	1	Parent=Os07t0679700-01
Chr07	irgsp1_rep	CDS	28787884	28787951	.	-	1	Parent=Os07t0679700-01
Chr07	irgsp1_rep	CDS	28786762	28787558	.	-	2	Parent=Os07t0679700-01
Chr07	irgsp1_rep	three_prime_UTR	28786471	28786761	.	-	.	Parent=Os07t0679700-01
Chr07	irgsp1_rep	mRNA	28809536	28819770	.	-	.	ID=Os07t0680000-01;Name=Os07t0680000-01;Locus_id=Os07g0680000;Oryzabase Gene Symbol Synonym(s)=VSR3%2C OsVSR3;Note=Similar to Vacuolar sorting receptor 1 precursor (AtVSR1) (Epidermal growth factor receptor-like protein 1) (AtELP1) (AtELP) (BP80-like protein b) (AtBP80b) (Spot 3 protein).;Transcript_evidence=AK072667 (DDBJ%2C Best hit);ORF_evidence=Q9LLR3 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515);InterPro=Protease-associated domain%2C PA (IPR003137),Epidermal growth factor-like (IPR006210),EGF-like calcium-binding%2C conserved site (IPR018097);NIAS_FLcDNA=J023134F15;Oryzabase=11113;Expression=AK072667;TENOR=Os07t0680000-01;KEGG=Os07t0680000-01
Chr07	irgsp1_rep	five_prime_UTR	28819576	28819770	.	-	.	Parent=Os07t0680000-01
Chr07	irgsp1_rep	CDS	28819278	28819575	.	-	0	Parent=Os07t0680000-01
Chr07	irgsp1_rep	CDS	28817379	28818065	.	-	2	Parent=Os07t0680000-01
Chr07	irgsp1_rep	CDS	28817203	28817291	.	-	2	Parent=Os07t0680000-01
Chr07	irgsp1_rep	CDS	28817021	28817090	.	-	0	Parent=Os07t0680000-01
Chr07	irgsp1_rep	CDS	28816856	28816939	.	-	2	Parent=Os07t0680000-01
Chr07	irgsp1_rep	CDS	28816679	28816755	.	-	2	Parent=Os07t0680000-01
Chr07	irgsp1_rep	CDS	28811402	28811483	.	-	0	Parent=Os07t0680000-01
Chr07	irgsp1_rep	CDS	28811131	28811213	.	-	2	Parent=Os07t0680000-01
Chr07	irgsp1_rep	CDS	28810990	28811056	.	-	0	Parent=Os07t0680000-01
Chr07	irgsp1_rep	CDS	28810692	28810823	.	-	2	Parent=Os07t0680000-01
Chr07	irgsp1_rep	CDS	28810136	28810242	.	-	2	Parent=Os07t0680000-01
Chr07	irgsp1_rep	CDS	28809909	28810013	.	-	0	Parent=Os07t0680000-01
Chr07	irgsp1_rep	three_prime_UTR	28809536	28809908	.	-	.	Parent=Os07t0680000-01
Chr07	irgsp1_rep	mRNA	28809876	28810298	.	+	.	ID=Os07t0680150-00;Name=Os07t0680150-00;Locus_id=Os07g0680150;Note=Non-protein coding transcript.;Transcript_evidence=EU950135 (DDBJ);ORF_evidence=NONE;TENOR=Os07t0680150-00
Chr07	irgsp1_rep	exon	28809876	28810298	.	+	.	Parent=Os07t0680150-00
Chr07	irgsp1_rep	mRNA	28821923	28824001	.	-	.	ID=Os07t0680300-01;Name=Os07t0680300-01;Locus_id=Os07g0680300;Oryzabase Gene Symbol Synonym(s)=P61;Oryzabase Gene Name Synonym(s)=a subunit of the mitochondrial electron transport chain (ETC) complex III;Note=Similar to Ubiquinol-cytoChrome c reductase complex 6.7 kDa protein (EC 1.10.2.2) (CR6).;Transcript_evidence=AK063800 (DDBJ%2C Best hit);ORF_evidence=B6T3C5 (UniProt);NIAS_FLcDNA=001-121-F07;Oryzabase=20363;Expression=AK063800;TENOR=Os07t0680300-01;KEGG=Os07t0680300-01 (EC:1.10.2.2)
Chr07	irgsp1_rep	five_prime_UTR	28823943	28824001	.	-	.	Parent=Os07t0680300-01
Chr07	irgsp1_rep	CDS	28823811	28823942	.	-	0	Parent=Os07t0680300-01
Chr07	irgsp1_rep	CDS	28822204	28822257	.	-	0	Parent=Os07t0680300-01
Chr07	irgsp1_rep	three_prime_UTR	28821923	28822203	.	-	.	Parent=Os07t0680300-01
Chr07	irgsp1_rep	mRNA	28828798	28831910	.	-	.	ID=Os07t0680400-01;Name=Os07t0680400-01;Locus_id=Os07g0680400;RAP-DB Gene Symbol Synonym(s)=WRKY47%2C OsWRKY47;RAP-DB Gene Name Synonym(s)=WRKY GENE 47%2C Rice WRKY gene47;CGSNL Gene Symbol=WRKY47;CGSNL Gene Name=WRKY GENE 47;Oryzabase Gene Symbol Synonym(s)=OsWRKY47;Oryzabase Gene Name Synonym(s)=Rice WRKY gene47;Note=WRKY transcription factor%2C Drought tolerance;Transcript_evidence=AK110900,HQ858848;ORF_evidence=Q7XHX5;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=WRKY domain (IPR003657);NIAS_FLcDNA=002-173-B01;Manual Curation=September 11%2C 2015;Literature_PMID=25957211,Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6561;Expression=AK110900;TENOR=Os07t0680400-01;KEGG=Os07t0680400-01
Chr07	irgsp1_rep	five_prime_UTR	28831838	28831910	.	-	.	Parent=Os07t0680400-01
Chr07	irgsp1_rep	five_prime_UTR	28831027	28831422	.	-	.	Parent=Os07t0680400-01
Chr07	irgsp1_rep	CDS	28830707	28831026	.	-	0	Parent=Os07t0680400-01
Chr07	irgsp1_rep	CDS	28830164	28830271	.	-	1	Parent=Os07t0680400-01
Chr07	irgsp1_rep	CDS	28829103	28829676	.	-	1	Parent=Os07t0680400-01
Chr07	irgsp1_rep	three_prime_UTR	28828798	28829102	.	-	.	Parent=Os07t0680400-01
Chr07	irgsp1_rep	mRNA	28832616	28834725	.	-	.	ID=Os07t0680500-01;Name=Os07t0680500-01;Locus_id=Os07g0680500;Note=Similar to ATP binding / DNA binding / helicase/ nucleic acid binding / protein binding / zinc ion binding.;Transcript_evidence=AK070164 (DDBJ%2C Best hit);ORF_evidence=NP_181609.4 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524);InterPro=Helicase%2C C-terminal (IPR001650);NIAS_FLcDNA=J023043E07;TENOR=Os07t0680500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	28834550	28834725	.	-	.	Parent=Os07t0680500-01
Chr07	irgsp1_rep	CDS	28834383	28834549	.	-	0	Parent=Os07t0680500-01
Chr07	irgsp1_rep	CDS	28833391	28833652	.	-	1	Parent=Os07t0680500-01
Chr07	irgsp1_rep	CDS	28833033	28833311	.	-	0	Parent=Os07t0680500-01
Chr07	irgsp1_rep	three_prime_UTR	28832616	28833032	.	-	.	Parent=Os07t0680500-01
Chr07	irgsp1_rep	mRNA	28848894	28852236	.	-	.	ID=Os07t0680600-01;Name=Os07t0680600-01;Locus_id=Os07g0680600;Note=Protein of unknown function DUF3133 domain containing protein.;Transcript_evidence=AK103060 (DDBJ%2C Best hit);ORF_evidence=A2YPZ6 (UniProt);InterPro=Protein of unknown function DUF3133 (IPR021480);NIAS_FLcDNA=J033117L20;Expression=AK103060;TENOR=Os07t0680600-01;KEGG=Os07t0680600-01
Chr07	irgsp1_rep	five_prime_UTR	28851939	28852236	.	-	.	Parent=Os07t0680600-01
Chr07	irgsp1_rep	five_prime_UTR	28851129	28851207	.	-	.	Parent=Os07t0680600-01
Chr07	irgsp1_rep	CDS	28851008	28851128	.	-	0	Parent=Os07t0680600-01
Chr07	irgsp1_rep	CDS	28849099	28850906	.	-	2	Parent=Os07t0680600-01
Chr07	irgsp1_rep	three_prime_UTR	28848894	28849098	.	-	.	Parent=Os07t0680600-01
Chr07	irgsp1_rep	mRNA	28848874	28850108	.	-	.	ID=Os07t0680600-02;Name=Os07t0680600-02;Locus_id=Os07g0680600;Note=Hypothetical conserved gene.;Transcript_evidence=AK059307 (DDBJ%2C Best hit);ORF_evidence=A2YPZ6 (UniProt);InterPro=Protein of unknown function DUF3133 (IPR021480);NIAS_FLcDNA=001-025-G02;Expression=AK059307;TENOR=Os07t0680600-02;KEGG=Os07t0680600-02
Chr07	irgsp1_rep	five_prime_UTR	28850107	28850108	.	-	.	Parent=Os07t0680600-02
Chr07	irgsp1_rep	CDS	28849099	28850106	.	-	0	Parent=Os07t0680600-02
Chr07	irgsp1_rep	three_prime_UTR	28848874	28849098	.	-	.	Parent=Os07t0680600-02
Chr07	irgsp1_rep	mRNA	28850592	28851245	.	+	.	ID=Os07t0680700-00;Name=Os07t0680700-00;Locus_id=Os07g0680700;Note=Hypothetical protein.;Transcript_evidence=AK369455 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0680700-00
Chr07	irgsp1_rep	five_prime_UTR	28850592	28850649	.	+	.	Parent=Os07t0680700-00
Chr07	irgsp1_rep	CDS	28850650	28850886	.	+	0	Parent=Os07t0680700-00
Chr07	irgsp1_rep	three_prime_UTR	28850887	28851245	.	+	.	Parent=Os07t0680700-00
Chr07	irgsp1_rep	mRNA	28857200	28859303	.	-	.	ID=Os07t0680800-00;Name=Os07t0680800-00;Locus_id=Os07g0680800;Note=Hypothetical protein.;Transcript_evidence=tplb0047b06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0680800-00
Chr07	irgsp1_rep	five_prime_UTR	28859205	28859303	.	-	.	Parent=Os07t0680800-00
Chr07	irgsp1_rep	CDS	28859026	28859204	.	-	0	Parent=Os07t0680800-00
Chr07	irgsp1_rep	CDS	28858814	28858935	.	-	1	Parent=Os07t0680800-00
Chr07	irgsp1_rep	CDS	28858654	28858721	.	-	2	Parent=Os07t0680800-00
Chr07	irgsp1_rep	three_prime_UTR	28858575	28858653	.	-	.	Parent=Os07t0680800-00
Chr07	irgsp1_rep	three_prime_UTR	28858356	28858488	.	-	.	Parent=Os07t0680800-00
Chr07	irgsp1_rep	three_prime_UTR	28858188	28858278	.	-	.	Parent=Os07t0680800-00
Chr07	irgsp1_rep	three_prime_UTR	28857200	28858105	.	-	.	Parent=Os07t0680800-00
Chr07	irgsp1_rep	mRNA	28857663	28859508	.	+	.	ID=Os07t0680900-01;Name=Os07t0680900-01;Locus_id=Os07g0680900;Note=Similar to Ribosomal protein S6 kinase.;Transcript_evidence=AK062218 (DDBJ%2C Best hit);ORF_evidence=NP_001105237.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),AGC-kinase%2C C-terminal (IPR000961),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Protein kinase%2C C-terminal (IPR017892);NIAS_FLcDNA=001-047-B02;Expression=AK062218;TENOR=Os07t0680900-01;KEGG=Os07t0680900-01 (EC:2.7.11.1)
Chr07	irgsp1_rep	CDS	28857663	28858112	.	+	0	Parent=Os07t0680900-01
Chr07	irgsp1_rep	CDS	28858192	28858274	.	+	0	Parent=Os07t0680900-01
Chr07	irgsp1_rep	CDS	28858358	28858478	.	+	1	Parent=Os07t0680900-01
Chr07	irgsp1_rep	CDS	28858560	28858733	.	+	0	Parent=Os07t0680900-01
Chr07	irgsp1_rep	CDS	28858823	28858927	.	+	0	Parent=Os07t0680900-01
Chr07	irgsp1_rep	CDS	28859017	28859343	.	+	0	Parent=Os07t0680900-01
Chr07	irgsp1_rep	three_prime_UTR	28859344	28859508	.	+	.	Parent=Os07t0680900-01
Chr07	irgsp1_rep	mRNA	28859456	28863207	.	-	.	ID=Os07t0681000-01;Name=Os07t0681000-01;Locus_id=Os07g0681000;Note=Similar to Eukaryotic translation initiation factor 2 beta subunit (eIF-2-beta) (P38).;Transcript_evidence=AK066982 (DDBJ%2C Best hit);ORF_evidence=B6TI18 (UniProt);GO=Biological Process: translational initiation (GO:0006413),Molecular Function: translation initiation factor activity (GO:0003743);InterPro=Translation initiation factor IF2/IF5 (IPR002735),Translation initiation factor IF2/IF5%2C N-terminal (IPR016189),Translation initiation factor IF2/IF5%2C zinc-binding (IPR016190);NIAS_FLcDNA=J013093I07;Expression=AK066982;TENOR=Os07t0681000-01;KEGG=Os07t0681000-01
Chr07	irgsp1_rep	five_prime_UTR	28863090	28863207	.	-	.	Parent=Os07t0681000-01
Chr07	irgsp1_rep	five_prime_UTR	28862937	28862996	.	-	.	Parent=Os07t0681000-01
Chr07	irgsp1_rep	CDS	28862892	28862936	.	-	0	Parent=Os07t0681000-01
Chr07	irgsp1_rep	CDS	28862194	28862299	.	-	0	Parent=Os07t0681000-01
Chr07	irgsp1_rep	CDS	28862061	28862116	.	-	2	Parent=Os07t0681000-01
Chr07	irgsp1_rep	CDS	28861892	28861943	.	-	0	Parent=Os07t0681000-01
Chr07	irgsp1_rep	CDS	28861720	28861820	.	-	2	Parent=Os07t0681000-01
Chr07	irgsp1_rep	CDS	28861148	28861293	.	-	0	Parent=Os07t0681000-01
Chr07	irgsp1_rep	CDS	28860902	28861044	.	-	1	Parent=Os07t0681000-01
Chr07	irgsp1_rep	CDS	28860650	28860735	.	-	2	Parent=Os07t0681000-01
Chr07	irgsp1_rep	CDS	28859740	28859811	.	-	0	Parent=Os07t0681000-01
Chr07	irgsp1_rep	three_prime_UTR	28859456	28859739	.	-	.	Parent=Os07t0681000-01
Chr07	irgsp1_rep	mRNA	28863599	28868627	.	-	.	ID=Os07t0681100-01;Name=Os07t0681100-01;Locus_id=Os07g0681100;Note=Similar to Receptor-like protein kinase.;Transcript_evidence=AK103598 (DDBJ%2C Best hit);ORF_evidence=C0LGW1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033133E19;Expression=AK103598;TENOR=Os07t0681100-01;KEGG=Os07t0681100-01
Chr07	irgsp1_rep	five_prime_UTR	28868370	28868627	.	-	.	Parent=Os07t0681100-01
Chr07	irgsp1_rep	five_prime_UTR	28866173	28866244	.	-	.	Parent=Os07t0681100-01
Chr07	irgsp1_rep	CDS	28864882	28866172	.	-	0	Parent=Os07t0681100-01
Chr07	irgsp1_rep	CDS	28863817	28864448	.	-	2	Parent=Os07t0681100-01
Chr07	irgsp1_rep	three_prime_UTR	28863599	28863816	.	-	.	Parent=Os07t0681100-01
Chr07	irgsp1_rep	mRNA	28863557	28868527	.	-	.	ID=Os07t0681100-02;Name=Os07t0681100-02;Locus_id=Os07g0681100;Note=Similar to Receptor-like protein kinase.;Transcript_evidence=AK099672 (DDBJ%2C Best hit);ORF_evidence=C0LGW1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013069C23;Expression=AK099672;TENOR=Os07t0681100-02;KEGG=Os07t0681100-02
Chr07	irgsp1_rep	five_prime_UTR	28868370	28868527	.	-	.	Parent=Os07t0681100-02
Chr07	irgsp1_rep	five_prime_UTR	28866173	28866244	.	-	.	Parent=Os07t0681100-02
Chr07	irgsp1_rep	CDS	28864882	28866172	.	-	0	Parent=Os07t0681100-02
Chr07	irgsp1_rep	CDS	28863817	28864448	.	-	2	Parent=Os07t0681100-02
Chr07	irgsp1_rep	three_prime_UTR	28863557	28863816	.	-	.	Parent=Os07t0681100-02
Chr07	irgsp1_rep	mRNA	28863622	28868469	.	-	.	ID=Os07t0681100-03;Name=Os07t0681100-03;Locus_id=Os07g0681100;Note=Similar to Receptor-like protein kinase.;Transcript_evidence=AK073851 (DDBJ%2C Best hit);ORF_evidence=C0LGW1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033073I12;Expression=AK073851;TENOR=Os07t0681100-03;KEGG=Os07t0681100-03
Chr07	irgsp1_rep	five_prime_UTR	28868370	28868469	.	-	.	Parent=Os07t0681100-03
Chr07	irgsp1_rep	five_prime_UTR	28866173	28866244	.	-	.	Parent=Os07t0681100-03
Chr07	irgsp1_rep	CDS	28864882	28866172	.	-	0	Parent=Os07t0681100-03
Chr07	irgsp1_rep	CDS	28863817	28864448	.	-	2	Parent=Os07t0681100-03
Chr07	irgsp1_rep	three_prime_UTR	28863622	28863816	.	-	.	Parent=Os07t0681100-03
Chr07	irgsp1_rep	mRNA	28863599	28865411	.	-	.	ID=Os07t0681100-04;Name=Os07t0681100-04;Locus_id=Os07g0681100;Note=Similar to Leucine-rich repeat receptor-like protein kinase (Fragment).;Transcript_evidence=AK103917 (DDBJ%2C Best hit);ORF_evidence=C0LGW1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-013-A06;TENOR=Os07t0681100-04;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	28865348	28865411	.	-	.	Parent=Os07t0681100-04
Chr07	irgsp1_rep	CDS	28864882	28865347	.	-	0	Parent=Os07t0681100-04
Chr07	irgsp1_rep	CDS	28863817	28864448	.	-	2	Parent=Os07t0681100-04
Chr07	irgsp1_rep	three_prime_UTR	28863599	28863816	.	-	.	Parent=Os07t0681100-04
Chr07	irgsp1_rep	mRNA	28877263	28879413	.	+	.	ID=Os07t0681200-01;Name=Os07t0681200-01;Locus_id=Os07g0681200;Note=Vegetative storage protein/acid phosphatase domain containing protein.;Transcript_evidence=AK064745 (DDBJ%2C Best hit);ORF_evidence=Q10LW6 (UniProt);GO=Molecular Function: acid phosphatase activity (GO:0003993);InterPro=Acid phosphatase (Class B) (IPR005519),Acid phosphatase%2C plant (IPR010028),Vegetative storage protein/acid phosphatase (IPR014403),HAD-like domain (IPR023214);NIAS_FLcDNA=002-120-E04;Expression=AK064745;TENOR=Os07t0681200-01;KEGG=Os07t0681200-01
Chr07	irgsp1_rep	five_prime_UTR	28877263	28877286	.	+	.	Parent=Os07t0681200-01
Chr07	irgsp1_rep	CDS	28877287	28877636	.	+	0	Parent=Os07t0681200-01
Chr07	irgsp1_rep	CDS	28878010	28878216	.	+	1	Parent=Os07t0681200-01
Chr07	irgsp1_rep	CDS	28879143	28879320	.	+	1	Parent=Os07t0681200-01
Chr07	irgsp1_rep	three_prime_UTR	28879321	28879413	.	+	.	Parent=Os07t0681200-01
Chr07	irgsp1_rep	mRNA	28877279	28878190	.	-	.	ID=Os07t0681250-00;Name=Os07t0681250-00;Locus_id=Os07g0681250;Note=Hypothetical gene.;Transcript_evidence=BT064591 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0681250-00;KEGG=Os07t0681250-00
Chr07	irgsp1_rep	CDS	28877965	28878190	.	-	0	Parent=Os07t0681250-00
Chr07	irgsp1_rep	CDS	28877679	28877704	.	-	2	Parent=Os07t0681250-00
Chr07	irgsp1_rep	three_prime_UTR	28877279	28877678	.	-	.	Parent=Os07t0681250-00
Chr07	irgsp1_rep	mRNA	28882173	28886338	.	+	.	ID=Os07t0681300-00;Name=Os07t0681300-00;Locus_id=Os07g0681300;CGSNL Gene Symbol=CYP714B1;CGSNL Gene Name=P-450 714B1;Oryzabase Gene Symbol Synonym(s)=OsCYP714B1;Oryzabase Gene Name Synonym(s)=CytoChrome P450 714B1;Note=CytoChrome P450 family protein.;Transcript_evidence=AK252161 (DDBJ);ORF_evidence=B6SSW8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);Oryzabase=12263;TENOR=Os07t0681300-00;KEGG=Os07t0681300-00
Chr07	irgsp1_rep	five_prime_UTR	28882173	28882188	.	+	.	Parent=Os07t0681300-00
Chr07	irgsp1_rep	CDS	28882189	28882483	.	+	0	Parent=Os07t0681300-00
Chr07	irgsp1_rep	CDS	28884800	28885026	.	+	2	Parent=Os07t0681300-00
Chr07	irgsp1_rep	CDS	28885179	28885811	.	+	0	Parent=Os07t0681300-00
Chr07	irgsp1_rep	CDS	28885889	28886338	.	+	0	Parent=Os07t0681300-00
Chr07	irgsp1_rep	mRNA	28882249	28886301	.	-	.	ID=Os07t0681350-00;Name=Os07t0681350-00;Locus_id=Os07g0681350;Note=Hypothetical protein.;Transcript_evidence=tplb0053a11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0681350-00
Chr07	irgsp1_rep	five_prime_UTR	28886005	28886301	.	-	.	Parent=Os07t0681350-00
Chr07	irgsp1_rep	CDS	28885827	28886004	.	-	0	Parent=Os07t0681350-00
Chr07	irgsp1_rep	CDS	28885224	28885756	.	-	2	Parent=Os07t0681350-00
Chr07	irgsp1_rep	three_prime_UTR	28885210	28885223	.	-	.	Parent=Os07t0681350-00
Chr07	irgsp1_rep	three_prime_UTR	28884844	28885058	.	-	.	Parent=Os07t0681350-00
Chr07	irgsp1_rep	three_prime_UTR	28882249	28882522	.	-	.	Parent=Os07t0681350-00
Chr07	irgsp1_rep	mRNA	28889240	28892030	.	+	.	ID=Os07t0681400-01;Name=Os07t0681400-01;Locus_id=Os07g0681400;CGSNL Gene Symbol=CML24;CGSNL Gene Name=CALMODULIN-LIKE PROTEIN 24;Oryzabase Gene Symbol Synonym(s)=OsCML24;Oryzabase Gene Name Synonym(s)=calmodulin-like protein 24;Note=Similar to Calcium-binding protein CAST.;Transcript_evidence=AK062850 (DDBJ%2C Best hit);ORF_evidence=B6TL00 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=001-108-A02;Oryzabase=10508;Expression=AK062850;TENOR=Os07t0681400-01;KEGG=Os07t0681400-01
Chr07	irgsp1_rep	five_prime_UTR	28889240	28889291	.	+	.	Parent=Os07t0681400-01
Chr07	irgsp1_rep	CDS	28889292	28889885	.	+	0	Parent=Os07t0681400-01
Chr07	irgsp1_rep	three_prime_UTR	28889886	28889933	.	+	.	Parent=Os07t0681400-01
Chr07	irgsp1_rep	three_prime_UTR	28891874	28892030	.	+	.	Parent=Os07t0681400-01
Chr07	irgsp1_rep	mRNA	28893100	28900962	.	+	.	ID=Os07t0681500-01;Name=Os07t0681500-01;Locus_id=Os07g0681500;Oryzabase Gene Symbol Synonym(s)=OsMED5_3%2C MED5_3;Oryzabase Gene Name Synonym(s)=Mediator 5_3;Note=Ankyrin repeat containing protein.;Transcript_evidence=AK121650 (DDBJ%2C Best hit),AK103662 (DDBJ%2C Best hit);ORF_evidence=B8B635 (UniProt);NIAS_FLcDNA=J033060O15,J033135I18;Oryzabase=20967;TENOR=Os07t0681500-01
Chr07	irgsp1_rep	five_prime_UTR	28893100	28893205	.	+	.	Parent=Os07t0681500-01
Chr07	irgsp1_rep	CDS	28893206	28893486	.	+	0	Parent=Os07t0681500-01
Chr07	irgsp1_rep	CDS	28893588	28893701	.	+	1	Parent=Os07t0681500-01
Chr07	irgsp1_rep	CDS	28893994	28894347	.	+	1	Parent=Os07t0681500-01
Chr07	irgsp1_rep	CDS	28894530	28894846	.	+	1	Parent=Os07t0681500-01
Chr07	irgsp1_rep	CDS	28895074	28895165	.	+	2	Parent=Os07t0681500-01
Chr07	irgsp1_rep	CDS	28895278	28895605	.	+	0	Parent=Os07t0681500-01
Chr07	irgsp1_rep	CDS	28895906	28896113	.	+	2	Parent=Os07t0681500-01
Chr07	irgsp1_rep	CDS	28897133	28897247	.	+	1	Parent=Os07t0681500-01
Chr07	irgsp1_rep	CDS	28897601	28897768	.	+	0	Parent=Os07t0681500-01
Chr07	irgsp1_rep	CDS	28898382	28899054	.	+	0	Parent=Os07t0681500-01
Chr07	irgsp1_rep	CDS	28899130	28899336	.	+	2	Parent=Os07t0681500-01
Chr07	irgsp1_rep	CDS	28899489	28900579	.	+	2	Parent=Os07t0681500-01
Chr07	irgsp1_rep	three_prime_UTR	28900580	28900962	.	+	.	Parent=Os07t0681500-01
Chr07	irgsp1_rep	mRNA	28895697	28900839	.	+	.	ID=Os07t0681500-02;Name=Os07t0681500-02;Locus_id=Os07g0681500;Oryzabase Gene Symbol Synonym(s)=OsMED5_3%2C MED5_3;Oryzabase Gene Name Synonym(s)=Mediator 5_3;Note=Similar to predicted protein.;Transcript_evidence=AK100010 (DDBJ%2C Best hit);ORF_evidence=Q7XHW2 (UniProt);NIAS_FLcDNA=J013139E12;Oryzabase=20967;Expression=AK100010;TENOR=Os07t0681500-02;KEGG=Os07t0681500-02
Chr07	irgsp1_rep	five_prime_UTR	28895697	28895835	.	+	.	Parent=Os07t0681500-02
Chr07	irgsp1_rep	CDS	28895836	28896113	.	+	0	Parent=Os07t0681500-02
Chr07	irgsp1_rep	CDS	28897133	28897247	.	+	1	Parent=Os07t0681500-02
Chr07	irgsp1_rep	CDS	28897601	28897768	.	+	0	Parent=Os07t0681500-02
Chr07	irgsp1_rep	CDS	28898382	28899054	.	+	0	Parent=Os07t0681500-02
Chr07	irgsp1_rep	CDS	28899130	28899336	.	+	2	Parent=Os07t0681500-02
Chr07	irgsp1_rep	CDS	28899489	28900579	.	+	2	Parent=Os07t0681500-02
Chr07	irgsp1_rep	three_prime_UTR	28900580	28900839	.	+	.	Parent=Os07t0681500-02
Chr07	irgsp1_rep	mRNA	28901514	28908685	.	+	.	ID=Os07t0681600-01;Name=Os07t0681600-01;Locus_id=Os07g0681600;Oryzabase Gene Name Synonym(s)=RecQ homologue%2C RecQ-like helices%2C RecQ helicase;Note=DNA helicase%2C ATP-dependent%2C RecQ type domain containing protein.;Transcript_evidence=AK073504 (DDBJ%2C Best hit);ORF_evidence=B9FUX4 (UniProt);GO=Biological Process: DNA replication (GO:0006260),Biological Process: DNA repair (GO:0006281),Biological Process: DNA recombination (GO:0006310),Biological Process: cellular metabolic process (GO:0044237),Cellular Component: intracellular (GO:0005622),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: catalytic activity (GO:0003824),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026),Molecular Function: ATP-dependent 3'-5' DNA helicase activity (GO:0043140);InterPro=Helicase%2C C-terminal (IPR001650),Helicase/RNase D C-terminal%2C HRDC domain (IPR002121),DNA helicase%2C ATP-dependent%2C RecQ type (IPR004589),HRDC-like (IPR010997),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RQC domain (IPR018982);NIAS_FLcDNA=J033043G23;Oryzabase=21298;Expression=AK073504;TENOR=Os07t0681600-01;KEGG=Os07t0681600-01 (EC:3.6.1.-)
Chr07	irgsp1_rep	five_prime_UTR	28901514	28901648	.	+	.	Parent=Os07t0681600-01
Chr07	irgsp1_rep	CDS	28901649	28901664	.	+	0	Parent=Os07t0681600-01
Chr07	irgsp1_rep	CDS	28901785	28901899	.	+	2	Parent=Os07t0681600-01
Chr07	irgsp1_rep	CDS	28902344	28902419	.	+	1	Parent=Os07t0681600-01
Chr07	irgsp1_rep	CDS	28902518	28902660	.	+	0	Parent=Os07t0681600-01
Chr07	irgsp1_rep	CDS	28902875	28902961	.	+	1	Parent=Os07t0681600-01
Chr07	irgsp1_rep	CDS	28903070	28903153	.	+	1	Parent=Os07t0681600-01
Chr07	irgsp1_rep	CDS	28903802	28904009	.	+	1	Parent=Os07t0681600-01
Chr07	irgsp1_rep	CDS	28904099	28904184	.	+	0	Parent=Os07t0681600-01
Chr07	irgsp1_rep	CDS	28904573	28904804	.	+	1	Parent=Os07t0681600-01
Chr07	irgsp1_rep	CDS	28904929	28905049	.	+	0	Parent=Os07t0681600-01
Chr07	irgsp1_rep	CDS	28905188	28905324	.	+	2	Parent=Os07t0681600-01
Chr07	irgsp1_rep	CDS	28905664	28905772	.	+	0	Parent=Os07t0681600-01
Chr07	irgsp1_rep	CDS	28906329	28906371	.	+	2	Parent=Os07t0681600-01
Chr07	irgsp1_rep	CDS	28906523	28906694	.	+	1	Parent=Os07t0681600-01
Chr07	irgsp1_rep	CDS	28906770	28906840	.	+	0	Parent=Os07t0681600-01
Chr07	irgsp1_rep	CDS	28906943	28907036	.	+	1	Parent=Os07t0681600-01
Chr07	irgsp1_rep	CDS	28907186	28907398	.	+	0	Parent=Os07t0681600-01
Chr07	irgsp1_rep	CDS	28907473	28907679	.	+	0	Parent=Os07t0681600-01
Chr07	irgsp1_rep	CDS	28907844	28908164	.	+	0	Parent=Os07t0681600-01
Chr07	irgsp1_rep	CDS	28908242	28908367	.	+	0	Parent=Os07t0681600-01
Chr07	irgsp1_rep	three_prime_UTR	28908368	28908685	.	+	.	Parent=Os07t0681600-01
Chr07	irgsp1_rep	mRNA	28909026	28914027	.	+	.	ID=Os07t0681700-01;Name=Os07t0681700-01;Locus_id=Os07g0681700;CGSNL Gene Symbol=GAUT16;CGSNL Gene Name=GALACTURONOSYLTRANSFERASE 16;Oryzabase Gene Symbol Synonym(s)=OsGAUT16;Oryzabase Gene Name Synonym(s)=galacturonosyltransferase 16;Note=Glycosyl transferase%2C family 8 protein.;Transcript_evidence=AK103213 (DDBJ%2C Best hit);ORF_evidence=NP_001151802.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 8 (IPR002495);NIAS_FLcDNA=J033122M12;Oryzabase=23257;Expression=AK103213;TENOR=Os07t0681700-01;KEGG=Os07t0681700-01
Chr07	irgsp1_rep	five_prime_UTR	28909026	28909246	.	+	.	Parent=Os07t0681700-01
Chr07	irgsp1_rep	CDS	28909247	28909379	.	+	0	Parent=Os07t0681700-01
Chr07	irgsp1_rep	CDS	28909591	28909622	.	+	2	Parent=Os07t0681700-01
Chr07	irgsp1_rep	CDS	28909736	28909807	.	+	0	Parent=Os07t0681700-01
Chr07	irgsp1_rep	CDS	28910209	28910305	.	+	0	Parent=Os07t0681700-01
Chr07	irgsp1_rep	CDS	28910773	28910834	.	+	2	Parent=Os07t0681700-01
Chr07	irgsp1_rep	CDS	28911304	28911602	.	+	0	Parent=Os07t0681700-01
Chr07	irgsp1_rep	CDS	28911884	28912241	.	+	1	Parent=Os07t0681700-01
Chr07	irgsp1_rep	CDS	28912333	28912875	.	+	0	Parent=Os07t0681700-01
Chr07	irgsp1_rep	CDS	28913078	28913359	.	+	0	Parent=Os07t0681700-01
Chr07	irgsp1_rep	three_prime_UTR	28913360	28914027	.	+	.	Parent=Os07t0681700-01
Chr07	irgsp1_rep	mRNA	28919586	28920774	.	+	.	ID=Os07t0682000-01;Name=Os07t0682000-01;Locus_id=Os07g0682000;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK110569 (DDBJ%2C Best hit);ORF_evidence=B8B638 (UniProt);NIAS_FLcDNA=002-168-D09;Expression=AK110569;TENOR=Os07t0682000-01;KEGG=Os07t0682000-01
Chr07	irgsp1_rep	five_prime_UTR	28919586	28919631	.	+	.	Parent=Os07t0682000-01
Chr07	irgsp1_rep	CDS	28919632	28919643	.	+	0	Parent=Os07t0682000-01
Chr07	irgsp1_rep	CDS	28919763	28919847	.	+	0	Parent=Os07t0682000-01
Chr07	irgsp1_rep	CDS	28919976	28920727	.	+	2	Parent=Os07t0682000-01
Chr07	irgsp1_rep	three_prime_UTR	28920728	28920774	.	+	.	Parent=Os07t0682000-01
Chr07	irgsp1_rep	mRNA	28919936	28920734	.	-	.	ID=Os07t0682100-01;Name=Os07t0682100-01;Locus_id=Os07g0682100;Note=Hypothetical protein.;Transcript_evidence=AK111318 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-181-C11;TENOR=Os07t0682100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	28920734	28920734	.	-	.	Parent=Os07t0682100-01
Chr07	irgsp1_rep	CDS	28920068	28920733	.	-	0	Parent=Os07t0682100-01
Chr07	irgsp1_rep	three_prime_UTR	28919936	28920067	.	-	.	Parent=Os07t0682100-01
Chr07	irgsp1_rep	mRNA	28922317	28923550	.	-	.	ID=Os07t0682250-00;Name=Os07t0682250-00;Locus_id=Os07g0682250;Note=Hypothetical protein.;Transcript_evidence=tplb0036g09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0682250-00
Chr07	irgsp1_rep	five_prime_UTR	28923094	28923550	.	-	.	Parent=Os07t0682250-00
Chr07	irgsp1_rep	five_prime_UTR	28922981	28923022	.	-	.	Parent=Os07t0682250-00
Chr07	irgsp1_rep	CDS	28922811	28922980	.	-	0	Parent=Os07t0682250-00
Chr07	irgsp1_rep	CDS	28922666	28922720	.	-	1	Parent=Os07t0682250-00
Chr07	irgsp1_rep	three_prime_UTR	28922317	28922665	.	-	.	Parent=Os07t0682250-00
Chr07	irgsp1_rep	mRNA	28928736	28932799	.	-	.	ID=Os07t0682400-01;Name=Os07t0682400-01;Locus_id=Os07g0682400;CGSNL Gene Symbol=C3H53;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 53;Oryzabase Gene Symbol Synonym(s)=OsC3H53;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 53;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK119893 (DDBJ%2C Best hit);ORF_evidence=B7F3U2 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA recognition motif domain (IPR000504),Zinc finger%2C CCCH-type (IPR000571),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=002-180-B08;Oryzabase=8619;TENOR=Os07t0682400-01
Chr07	irgsp1_rep	five_prime_UTR	28932469	28932799	.	-	.	Parent=Os07t0682400-01
Chr07	irgsp1_rep	CDS	28931498	28932468	.	-	0	Parent=Os07t0682400-01
Chr07	irgsp1_rep	CDS	28931241	28931417	.	-	1	Parent=Os07t0682400-01
Chr07	irgsp1_rep	CDS	28930977	28931163	.	-	1	Parent=Os07t0682400-01
Chr07	irgsp1_rep	CDS	28930800	28930893	.	-	0	Parent=Os07t0682400-01
Chr07	irgsp1_rep	CDS	28930475	28930714	.	-	2	Parent=Os07t0682400-01
Chr07	irgsp1_rep	CDS	28930263	28930377	.	-	2	Parent=Os07t0682400-01
Chr07	irgsp1_rep	CDS	28929879	28930109	.	-	1	Parent=Os07t0682400-01
Chr07	irgsp1_rep	CDS	28929730	28929763	.	-	1	Parent=Os07t0682400-01
Chr07	irgsp1_rep	three_prime_UTR	28929684	28929729	.	-	.	Parent=Os07t0682400-01
Chr07	irgsp1_rep	three_prime_UTR	28928736	28929528	.	-	.	Parent=Os07t0682400-01
Chr07	irgsp1_rep	mRNA	28929377	28932741	.	-	.	ID=Os07t0682400-02;Name=Os07t0682400-02;Locus_id=Os07g0682400;CGSNL Gene Symbol=C3H53;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 53;Oryzabase Gene Symbol Synonym(s)=OsC3H53;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 53;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK111556 (DDBJ%2C Best hit);ORF_evidence=B7ETE2 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA recognition motif domain (IPR000504),Zinc finger%2C CCCH-type (IPR000571),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013056L03;Oryzabase=8619;Expression=AK111556;TENOR=Os07t0682400-02;KEGG=Os07t0682400-02
Chr07	irgsp1_rep	five_prime_UTR	28932469	28932741	.	-	.	Parent=Os07t0682400-02
Chr07	irgsp1_rep	CDS	28931498	28932468	.	-	0	Parent=Os07t0682400-02
Chr07	irgsp1_rep	CDS	28931241	28931417	.	-	1	Parent=Os07t0682400-02
Chr07	irgsp1_rep	CDS	28930977	28931163	.	-	1	Parent=Os07t0682400-02
Chr07	irgsp1_rep	CDS	28930800	28930893	.	-	0	Parent=Os07t0682400-02
Chr07	irgsp1_rep	CDS	28930475	28930714	.	-	2	Parent=Os07t0682400-02
Chr07	irgsp1_rep	CDS	28930263	28930377	.	-	2	Parent=Os07t0682400-02
Chr07	irgsp1_rep	CDS	28929879	28930109	.	-	1	Parent=Os07t0682400-02
Chr07	irgsp1_rep	CDS	28929730	28929763	.	-	1	Parent=Os07t0682400-02
Chr07	irgsp1_rep	three_prime_UTR	28929684	28929729	.	-	.	Parent=Os07t0682400-02
Chr07	irgsp1_rep	three_prime_UTR	28929377	28929528	.	-	.	Parent=Os07t0682400-02
Chr07	irgsp1_rep	mRNA	28928736	28932713	.	-	.	ID=Os07t0682400-03;Name=Os07t0682400-03;Locus_id=Os07g0682400;CGSNL Gene Symbol=C3H53;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 53;Oryzabase Gene Symbol Synonym(s)=OsC3H53;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 53;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK111514 (DDBJ%2C Best hit);ORF_evidence=B7ETE2 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA recognition motif domain (IPR000504),Zinc finger%2C CCCH-type (IPR000571),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013002B05;Oryzabase=8619;TENOR=Os07t0682400-03
Chr07	irgsp1_rep	five_prime_UTR	28932469	28932713	.	-	.	Parent=Os07t0682400-03
Chr07	irgsp1_rep	CDS	28931498	28932468	.	-	0	Parent=Os07t0682400-03
Chr07	irgsp1_rep	CDS	28931241	28931417	.	-	1	Parent=Os07t0682400-03
Chr07	irgsp1_rep	CDS	28930977	28931163	.	-	1	Parent=Os07t0682400-03
Chr07	irgsp1_rep	CDS	28930800	28930893	.	-	0	Parent=Os07t0682400-03
Chr07	irgsp1_rep	CDS	28930475	28930714	.	-	2	Parent=Os07t0682400-03
Chr07	irgsp1_rep	CDS	28930263	28930377	.	-	2	Parent=Os07t0682400-03
Chr07	irgsp1_rep	CDS	28929879	28930109	.	-	1	Parent=Os07t0682400-03
Chr07	irgsp1_rep	CDS	28929730	28929763	.	-	1	Parent=Os07t0682400-03
Chr07	irgsp1_rep	three_prime_UTR	28929684	28929729	.	-	.	Parent=Os07t0682400-03
Chr07	irgsp1_rep	three_prime_UTR	28928736	28929528	.	-	.	Parent=Os07t0682400-03
Chr07	irgsp1_rep	mRNA	28930212	28932930	.	+	.	ID=Os07t0682500-01;Name=Os07t0682500-01;Locus_id=Os07g0682500;Note=Hypothetical protein.;Transcript_evidence=AK109592 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-137-C05;TENOR=Os07t0682500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	28930212	28931920	.	+	.	Parent=Os07t0682500-01
Chr07	irgsp1_rep	CDS	28931921	28932460	.	+	0	Parent=Os07t0682500-01
Chr07	irgsp1_rep	three_prime_UTR	28932461	28932930	.	+	.	Parent=Os07t0682500-01
Chr07	irgsp1_rep	mRNA	28946872	28950517	.	+	.	ID=Os07t0682600-01;Name=Os07t0682600-01;Locus_id=Os07g0682600;Note=Hypothetical gene.;Transcript_evidence=AK288798 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090070H05;TENOR=Os07t0682600-01;KEGG=Os07t0682600-01
Chr07	irgsp1_rep	five_prime_UTR	28946872	28947804	.	+	.	Parent=Os07t0682600-01
Chr07	irgsp1_rep	CDS	28947805	28948098	.	+	0	Parent=Os07t0682600-01
Chr07	irgsp1_rep	three_prime_UTR	28948099	28950517	.	+	.	Parent=Os07t0682600-01
Chr07	irgsp1_rep	mRNA	28957027	28960828	.	-	.	ID=Os07t0682700-01;Name=Os07t0682700-01;Locus_id=Os07g0682700;Note=Similar to Chitin-binding lectin 1 precursor (PL-I).;Transcript_evidence=AK065098 (DDBJ%2C Best hit);ORF_evidence=B8B639 (UniProt);NIAS_FLcDNA=J013001M18;Expression=AK065098;TENOR=Os07t0682700-01;KEGG=Os07t0682700-01
Chr07	irgsp1_rep	five_prime_UTR	28960794	28960828	.	-	.	Parent=Os07t0682700-01
Chr07	irgsp1_rep	CDS	28960137	28960793	.	-	0	Parent=Os07t0682700-01
Chr07	irgsp1_rep	CDS	28959859	28960038	.	-	0	Parent=Os07t0682700-01
Chr07	irgsp1_rep	CDS	28959362	28959505	.	-	0	Parent=Os07t0682700-01
Chr07	irgsp1_rep	CDS	28959031	28959216	.	-	0	Parent=Os07t0682700-01
Chr07	irgsp1_rep	CDS	28958560	28958724	.	-	0	Parent=Os07t0682700-01
Chr07	irgsp1_rep	CDS	28957192	28957251	.	-	0	Parent=Os07t0682700-01
Chr07	irgsp1_rep	three_prime_UTR	28957027	28957191	.	-	.	Parent=Os07t0682700-01
Chr07	irgsp1_rep	mRNA	28957027	28960166	.	-	.	ID=Os07t0682700-02;Name=Os07t0682700-02;Locus_id=Os07g0682700;Note=Hypothetical conserved gene.;Transcript_evidence=AK103680 (DDBJ%2C Best hit);ORF_evidence=B8B639 (UniProt);NIAS_FLcDNA=J033136D22;Expression=AK103680;TENOR=Os07t0682700-02;KEGG=Os07t0682700-02
Chr07	irgsp1_rep	CDS	28960137	28960166	.	-	0	Parent=Os07t0682700-02
Chr07	irgsp1_rep	CDS	28959859	28960038	.	-	0	Parent=Os07t0682700-02
Chr07	irgsp1_rep	CDS	28959362	28959505	.	-	0	Parent=Os07t0682700-02
Chr07	irgsp1_rep	CDS	28959031	28959216	.	-	0	Parent=Os07t0682700-02
Chr07	irgsp1_rep	CDS	28958518	28958724	.	-	0	Parent=Os07t0682700-02
Chr07	irgsp1_rep	three_prime_UTR	28957027	28958517	.	-	.	Parent=Os07t0682700-02
Chr07	irgsp1_rep	mRNA	28963143	28967252	.	+	.	ID=Os07t0682800-01;Name=Os07t0682800-01;Locus_id=Os07g0682800;CGSNL Gene Symbol=RTH1;CGSNL Gene Name=ROOT HAIRLESS 1;Oryzabase Gene Symbol Synonym(s)=OsAPY%2C RTH1;Oryzabase Gene Name Synonym(s)=apyrase%2C root hairless 1%2C ATP-diphosphohydrolase;Note=Similar to Apyrase-like protein.;Transcript_evidence=AK066262 (DDBJ%2C Best hit);ORF_evidence=A0MWC2 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Nucleoside phosphatase GDA1/CD39 (IPR000407);NIAS_FLcDNA=J013059O11;Oryzabase=9423;TENOR=Os07t0682800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	28963143	28963143	.	+	.	Parent=Os07t0682800-01
Chr07	irgsp1_rep	CDS	28963144	28963782	.	+	0	Parent=Os07t0682800-01
Chr07	irgsp1_rep	CDS	28963878	28964006	.	+	0	Parent=Os07t0682800-01
Chr07	irgsp1_rep	CDS	28964089	28964145	.	+	0	Parent=Os07t0682800-01
Chr07	irgsp1_rep	CDS	28964247	28964339	.	+	0	Parent=Os07t0682800-01
Chr07	irgsp1_rep	CDS	28964856	28965061	.	+	0	Parent=Os07t0682800-01
Chr07	irgsp1_rep	CDS	28965541	28965635	.	+	1	Parent=Os07t0682800-01
Chr07	irgsp1_rep	CDS	28966262	28966476	.	+	2	Parent=Os07t0682800-01
Chr07	irgsp1_rep	CDS	28966559	28966748	.	+	0	Parent=Os07t0682800-01
Chr07	irgsp1_rep	CDS	28966841	28966947	.	+	2	Parent=Os07t0682800-01
Chr07	irgsp1_rep	three_prime_UTR	28966948	28967252	.	+	.	Parent=Os07t0682800-01
Chr07	irgsp1_rep	mRNA	28965534	28967012	.	-	.	ID=Os07t0682850-00;Name=Os07t0682850-00;Locus_id=Os07g0682850;Note=Hypothetical gene.;Transcript_evidence=BT017220 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0682850-00;KEGG=Os07t0682850-00
Chr07	irgsp1_rep	five_prime_UTR	28966999	28967012	.	-	.	Parent=Os07t0682850-00
Chr07	irgsp1_rep	CDS	28966833	28966998	.	-	0	Parent=Os07t0682850-00
Chr07	irgsp1_rep	CDS	28966596	28966732	.	-	2	Parent=Os07t0682850-00
Chr07	irgsp1_rep	three_prime_UTR	28966538	28966595	.	-	.	Parent=Os07t0682850-00
Chr07	irgsp1_rep	three_prime_UTR	28966270	28966457	.	-	.	Parent=Os07t0682850-00
Chr07	irgsp1_rep	three_prime_UTR	28965534	28965638	.	-	.	Parent=Os07t0682850-00
Chr07	irgsp1_rep	mRNA	28968391	28968562	.	-	.	ID=Os07t0683025-00;Name=Os07t0683025-00;Locus_id=Os07g0683025;Note=Similar to DNA binding protein.;Transcript_evidence=AY178579 (DDBJ);ORF_evidence=NP_001150470.1 (RefSeq);TENOR=Os07t0683025-00
Chr07	irgsp1_rep	five_prime_UTR	28968526	28968562	.	-	.	Parent=Os07t0683025-00
Chr07	irgsp1_rep	CDS	28968391	28968525	.	-	0	Parent=Os07t0683025-00
Chr07	irgsp1_rep	mRNA	28985802	28987953	.	+	.	ID=Os07t0683200-01;Name=Os07t0683200-01;Locus_id=Os07g0683200;CGSNL Gene Symbol=NAC103;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 103;Oryzabase Gene Symbol Synonym(s)=ONAC103%2C OsNAC18%2C NAC18;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 103%2C NAC domain-containing protein 18;Note=Similar to NAC domain transcription factor.;Transcript_evidence=AK068606 (DDBJ%2C Best hit);ORF_evidence=NP_001151613.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=J013157G23;Oryzabase=15866;TENOR=Os07t0683200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	28985802	28985905	.	+	.	Parent=Os07t0683200-01
Chr07	irgsp1_rep	CDS	28985906	28986154	.	+	0	Parent=Os07t0683200-01
Chr07	irgsp1_rep	three_prime_UTR	28986155	28986480	.	+	.	Parent=Os07t0683200-01
Chr07	irgsp1_rep	three_prime_UTR	28986983	28987953	.	+	.	Parent=Os07t0683200-01
Chr07	irgsp1_rep	mRNA	28992714	28994935	.	+	.	ID=Os07t0683600-01;Name=Os07t0683600-01;Locus_id=Os07g0683600;RAP-DB Gene Symbol Synonym(s)=OsEULD2;RAP-DB Gene Name Synonym(s)=Euonymus lectin D2;Note=D-type euonymus-related lectin (EUL)%2C "Response to salt and drought stress%2C hormone treatment"%2C  Response to biotic treatment;Transcript_evidence=Inferred from literature;ORF_evidence=Q6Z4N7;InterPro=Ricin B-like lectins (IPR035992);Manual Curation=March 27%2C 2020;Literature_PMID=32194594;TENOR=Os07t0683600-00;Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737)
Chr07	irgsp1_rep	five_prime_UTR	28992714	28992762	.	+	.	Parent=Os07t0683600-01
Chr07	irgsp1_rep	CDS	28992763	28992930	.	+	0	Parent=Os07t0683600-01
Chr07	irgsp1_rep	CDS	28993030	28993152	.	+	0	Parent=Os07t0683600-01
Chr07	irgsp1_rep	CDS	28993252	28993809	.	+	0	Parent=Os07t0683600-01
Chr07	irgsp1_rep	CDS	28993916	28994038	.	+	0	Parent=Os07t0683600-01
Chr07	irgsp1_rep	CDS	28994254	28994482	.	+	0	Parent=Os07t0683600-01
Chr07	irgsp1_rep	CDS	28994565	28994566	.	+	2	Parent=Os07t0683600-01
Chr07	irgsp1_rep	three_prime_UTR	28994567	28994935	.	+	.	Parent=Os07t0683600-01
Chr07	irgsp1_rep	mRNA	29004217	29006208	.	+	.	ID=Os07t0683900-01;Name=Os07t0683900-01;Locus_id=Os07g0683900;RAP-DB Gene Symbol Synonym(s)=OsEULD1a;RAP-DB Gene Name Synonym(s)=Euonymus lectin D1a;Note=D-type euonymus-related lectin (EUL)%2C Response to drought stress and ABA treatment%2C  Response to biotic treatment;Transcript_evidence=AK103324;ORF_evidence=Q6Z4N6;InterPro=Ricin B-like lectins (IPR035992);NIAS_FLcDNA=J033125K07;Manual Curation=March 27%2C 2020;Literature_PMID=32194594;Expression=AK103324;TENOR=Os07t0683900-01;KEGG=Os07t0683900-01;Subcellular location=nucleus (GO:0005634)
Chr07	irgsp1_rep	five_prime_UTR	29004217	29004295	.	+	.	Parent=Os07t0683900-01
Chr07	irgsp1_rep	CDS	29004296	29004454	.	+	0	Parent=Os07t0683900-01
Chr07	irgsp1_rep	CDS	29004547	29004669	.	+	0	Parent=Os07t0683900-01
Chr07	irgsp1_rep	CDS	29004777	29005172	.	+	0	Parent=Os07t0683900-01
Chr07	irgsp1_rep	CDS	29005251	29005373	.	+	0	Parent=Os07t0683900-01
Chr07	irgsp1_rep	CDS	29005464	29005692	.	+	0	Parent=Os07t0683900-01
Chr07	irgsp1_rep	CDS	29005808	29005809	.	+	2	Parent=Os07t0683900-01
Chr07	irgsp1_rep	three_prime_UTR	29005810	29006208	.	+	.	Parent=Os07t0683900-01
Chr07	irgsp1_rep	mRNA	29004523	29006151	.	+	.	ID=Os07t0683900-02;Name=Os07t0683900-02;Locus_id=Os07g0683900;CGSNL Gene Symbol=EULD1A;CGSNL Gene Name=EUL-RELATED LECTIN D1A;Oryzabase Gene Symbol Synonym(s)=OsEULD1a%2C EULD1a;Oryzabase Gene Name Synonym(s)=EUL-related lectin D1a;Note=Similar to Osr40g2 protein (Fragment).;Transcript_evidence=AK060899 (DDBJ%2C Best hit);ORF_evidence=O24212 (UniProt);InterPro=Ricin B-related lectin (IPR008997);NIAS_FLcDNA=001-035-D04;Manual Curation=March 27%2C 2020;Oryzabase=23521;Expression=AK060899;TENOR=Os07t0683900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	29004523	29004540	.	+	.	Parent=Os07t0683900-02
Chr07	irgsp1_rep	CDS	29004541	29004669	.	+	0	Parent=Os07t0683900-02
Chr07	irgsp1_rep	CDS	29004777	29005172	.	+	0	Parent=Os07t0683900-02
Chr07	irgsp1_rep	CDS	29005251	29005373	.	+	0	Parent=Os07t0683900-02
Chr07	irgsp1_rep	CDS	29005464	29005692	.	+	0	Parent=Os07t0683900-02
Chr07	irgsp1_rep	CDS	29005808	29005809	.	+	2	Parent=Os07t0683900-02
Chr07	irgsp1_rep	three_prime_UTR	29005810	29006151	.	+	.	Parent=Os07t0683900-02
Chr07	irgsp1_rep	mRNA	29008876	29009943	.	+	.	ID=Os07t0684000-01;Name=Os07t0684000-01;Locus_id=Os07g0684000;RAP-DB Gene Symbol Synonym(s)=OsEULS2;RAP-DB Gene Name Synonym(s)=Euonymus lectin S2;Note=S-type euonymus-related lectin (EUL)%2C "Response to salt and drought stress%2C ABA treatment"%2C  Response to biotic treatment;Transcript_evidence=AK072989;ORF_evidence=Q6Z4N4;InterPro=Ricin B-like lectins (IPR035992);NIAS_FLcDNA=J023145K15;Manual Curation=March 27%2C 2020;Literature_PMID=32194594;Expression=AK072989;TENOR=Os07t0684000-01;KEGG=Os07t0684000-01;Subcellular location=nucleus (GO:0005634)
Chr07	irgsp1_rep	five_prime_UTR	29008876	29008972	.	+	.	Parent=Os07t0684000-01
Chr07	irgsp1_rep	CDS	29008973	29009353	.	+	0	Parent=Os07t0684000-01
Chr07	irgsp1_rep	CDS	29009436	29009669	.	+	0	Parent=Os07t0684000-01
Chr07	irgsp1_rep	three_prime_UTR	29009670	29009943	.	+	.	Parent=Os07t0684000-01
Chr07	irgsp1_rep	mRNA	29011661	29013252	.	-	.	ID=Os07t0684100-01;Name=Os07t0684100-01;Locus_id=Os07g0684100;Note=Similar to Thioredoxin-like 1.;Transcript_evidence=AK105051 (DDBJ%2C Best hit),AK066094 (DDBJ%2C Best hit),AK104552 (DDBJ%2C Best hit);ORF_evidence=B6THP7 (UniProt);NIAS_FLcDNA=001-042-C01,J013056B07,006-305-E07;TENOR=Os07t0684100-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	29013118	29013252	.	-	.	Parent=Os07t0684100-01
Chr07	irgsp1_rep	CDS	29012893	29013117	.	-	0	Parent=Os07t0684100-01
Chr07	irgsp1_rep	CDS	29012522	29012698	.	-	0	Parent=Os07t0684100-01
Chr07	irgsp1_rep	CDS	29012256	29012420	.	-	0	Parent=Os07t0684100-01
Chr07	irgsp1_rep	CDS	29011887	29012159	.	-	0	Parent=Os07t0684100-01
Chr07	irgsp1_rep	three_prime_UTR	29011661	29011886	.	-	.	Parent=Os07t0684100-01
Chr07	irgsp1_rep	mRNA	29024592	29029437	.	+	.	ID=Os07t0684400-01;Name=Os07t0684400-01;Locus_id=Os07g0684400;Note=Hypothetical protein.;Transcript_evidence=AK120375 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013071H14;Expression=AK120375;TENOR=Os07t0684400-01;KEGG=Os07t0684400-01
Chr07	irgsp1_rep	five_prime_UTR	29024592	29024607	.	+	.	Parent=Os07t0684400-01
Chr07	irgsp1_rep	CDS	29024608	29025150	.	+	0	Parent=Os07t0684400-01
Chr07	irgsp1_rep	three_prime_UTR	29025151	29025240	.	+	.	Parent=Os07t0684400-01
Chr07	irgsp1_rep	three_prime_UTR	29025377	29025827	.	+	.	Parent=Os07t0684400-01
Chr07	irgsp1_rep	three_prime_UTR	29025948	29029437	.	+	.	Parent=Os07t0684400-01
Chr07	irgsp1_rep	mRNA	29024597	29027685	.	+	.	ID=Os07t0684400-02;Name=Os07t0684400-02;Locus_id=Os07g0684400;Note=Hypothetical protein.;Transcript_evidence=AK107109 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-123-A02;Expression=AK107109;TENOR=Os07t0684400-02;KEGG=Os07t0684400-02
Chr07	irgsp1_rep	five_prime_UTR	29024597	29024607	.	+	.	Parent=Os07t0684400-02
Chr07	irgsp1_rep	CDS	29024608	29025150	.	+	0	Parent=Os07t0684400-02
Chr07	irgsp1_rep	three_prime_UTR	29025151	29025240	.	+	.	Parent=Os07t0684400-02
Chr07	irgsp1_rep	three_prime_UTR	29025377	29025486	.	+	.	Parent=Os07t0684400-02
Chr07	irgsp1_rep	three_prime_UTR	29025711	29025827	.	+	.	Parent=Os07t0684400-02
Chr07	irgsp1_rep	three_prime_UTR	29025948	29026082	.	+	.	Parent=Os07t0684400-02
Chr07	irgsp1_rep	three_prime_UTR	29026709	29026750	.	+	.	Parent=Os07t0684400-02
Chr07	irgsp1_rep	three_prime_UTR	29026896	29027685	.	+	.	Parent=Os07t0684400-02
Chr07	irgsp1_rep	mRNA	29025685	29025829	.	-	.	ID=Os07t0684500-01;Name=Os07t0684500-01;Locus_id=Os07g0684500;Note=Non-protein coding transcript.;Transcript_evidence=AK060591 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-024-D12;TENOR=Os07t0684500-01
Chr07	irgsp1_rep	exon	29025685	29025829	.	-	.	Parent=Os07t0684500-01
Chr07	irgsp1_rep	mRNA	29029810	29031020	.	-	.	ID=Os07t0684700-01;Name=Os07t0684700-01;Locus_id=Os07g0684700;Note=Conserved hypothetical protein.;Transcript_evidence=AK242801 (DDBJ%2C Best hit);ORF_evidence=NP_001175340.1 (RefSeq);NIAS_FLcDNA=J090059J23;TENOR=Os07t0684700-01;KEGG=Os07t0684700-01
Chr07	irgsp1_rep	CDS	29030748	29031020	.	-	0	Parent=Os07t0684700-01
Chr07	irgsp1_rep	CDS	29030283	29030624	.	-	0	Parent=Os07t0684700-01
Chr07	irgsp1_rep	three_prime_UTR	29030241	29030282	.	-	.	Parent=Os07t0684700-01
Chr07	irgsp1_rep	three_prime_UTR	29029810	29030143	.	-	.	Parent=Os07t0684700-01
Chr07	irgsp1_rep	mRNA	29040456	29042297	.	-	.	ID=Os07t0684800-01;Name=Os07t0684800-01;Locus_id=Os07g0684800;CGSNL Gene Symbol=NAC15;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 15;Oryzabase Gene Symbol Synonym(s)=ONAC015%2C ONAC15%2C ONAC069%2C ONAC69;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 015%2C NAC domain-containing protein 15%2C NAC domain-containing protein 69;Note=Similar to NAM / CUC2-like protein.;Transcript_evidence=AK073876 (DDBJ%2C Best hit);ORF_evidence=A2YQ18 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=J033072L16;Oryzabase=11465;Expression=AK073876;TENOR=Os07t0684800-01;KEGG=Os07t0684800-01
Chr07	irgsp1_rep	five_prime_UTR	29042109	29042297	.	-	.	Parent=Os07t0684800-01
Chr07	irgsp1_rep	CDS	29041907	29042108	.	-	0	Parent=Os07t0684800-01
Chr07	irgsp1_rep	CDS	29041532	29041809	.	-	2	Parent=Os07t0684800-01
Chr07	irgsp1_rep	CDS	29041004	29041429	.	-	0	Parent=Os07t0684800-01
Chr07	irgsp1_rep	three_prime_UTR	29040456	29041003	.	-	.	Parent=Os07t0684800-01
Chr07	irgsp1_rep	mRNA	29040452	29042127	.	-	.	ID=Os07t0684800-02;Name=Os07t0684800-02;Locus_id=Os07g0684800;CGSNL Gene Symbol=NAC15;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 15;Oryzabase Gene Symbol Synonym(s)=ONAC015%2C ONAC15%2C ONAC069%2C ONAC69;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 015%2C NAC domain-containing protein 15%2C NAC domain-containing protein 69;Note=Similar to NAM / CUC2-like protein.;Transcript_evidence=AK105645 (DDBJ%2C Best hit);ORF_evidence=F1DJV8 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=001-200-F06;Oryzabase=11465;TENOR=Os07t0684800-02
Chr07	irgsp1_rep	five_prime_UTR	29042109	29042127	.	-	.	Parent=Os07t0684800-02
Chr07	irgsp1_rep	CDS	29041907	29042108	.	-	0	Parent=Os07t0684800-02
Chr07	irgsp1_rep	CDS	29041532	29041809	.	-	2	Parent=Os07t0684800-02
Chr07	irgsp1_rep	CDS	29041004	29041429	.	-	0	Parent=Os07t0684800-02
Chr07	irgsp1_rep	three_prime_UTR	29040452	29041003	.	-	.	Parent=Os07t0684800-02
Chr07	irgsp1_rep	mRNA	29058219	29063467	.	+	.	ID=Os07t0684850-01;Name=Os07t0684850-01;Locus_id=Os07g0684850;Note=Conserved hypothetical protein.;Transcript_evidence=AK288347 (DDBJ%2C Best hit);ORF_evidence=Q2R1S0 (UniProt);NIAS_FLcDNA=J090023M08;TENOR=Os07t0684850-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	29058219	29060784	.	+	.	Parent=Os07t0684850-01
Chr07	irgsp1_rep	CDS	29060785	29060913	.	+	0	Parent=Os07t0684850-01
Chr07	irgsp1_rep	three_prime_UTR	29060914	29063467	.	+	.	Parent=Os07t0684850-01
Chr07	irgsp1_rep	mRNA	29073043	29075550	.	+	.	ID=Os07t0684900-01;Name=Os07t0684900-01;Locus_id=Os07g0684900;RAP-DB Gene Symbol Synonym(s)=WOX11%2C OsWOX11%2C Os WOX11%2C OsWOX12A;RAP-DB Gene Name Synonym(s)=WUSCHEL-LIKE HOMEOBOX 11%2C WUSCHEL-related homeobox 11;CGSNL Gene Symbol=WOX11;CGSNL Gene Name=WUSCHEL-LIKE HOMEOBOX 11;Oryzabase Gene Symbol Synonym(s)=OsWOX11%2C Os WOX11%2C OsWOX12A;Oryzabase Gene Name Synonym(s)=WUSCHEL-related homeobox 11;Note=WUSCHEL-related homeobox protein%2C Transcription factor%2C Crown root development;Transcript_evidence=AK063503,AK073232;ORF_evidence=Q0D3I7;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeodomain-like (IPR009057),Homeobox domain (IPR001356);NIAS_FLcDNA=001-116-E11, J033021B15;Manual Curation=March 16%2C 2016;Literature_PMID=26307379,19258439;Oryzabase=13227;Expression=AK063503;TENOR=Os07t0684900-01;KEGG=Os07t0684900-01
Chr07	irgsp1_rep	five_prime_UTR	29073043	29073155	.	+	.	Parent=Os07t0684900-01
Chr07	irgsp1_rep	CDS	29073156	29073750	.	+	0	Parent=Os07t0684900-01
Chr07	irgsp1_rep	CDS	29074786	29074961	.	+	2	Parent=Os07t0684900-01
Chr07	irgsp1_rep	CDS	29075153	29075170	.	+	0	Parent=Os07t0684900-01
Chr07	irgsp1_rep	three_prime_UTR	29075171	29075550	.	+	.	Parent=Os07t0684900-01
Chr07	irgsp1_rep	mRNA	29077209	29081176	.	-	.	ID=Os07t0685000-02;Name=Os07t0685000-02;Locus_id=Os07g0685000;RAP-DB Gene Symbol Synonym(s)=OsCDF3%2C RDD2;RAP-DB Gene Name Synonym(s)=CYCLING DOF FACTOR 3%2C rice Dof daily fluctuations 2%2C;CGSNL Gene Symbol=RDD2;CGSNL Gene Name=RICE DOF DAILY FLUCTUATIONS 2;Oryzabase Gene Symbol Synonym(s)=OsDof23%2C Dof23%2C OsDof-23%2C OsDof1%2C OsCDF3%2C CDF3;Oryzabase Gene Name Synonym(s)=AOBP-like protein gene%2C Rdd1-like gene%2C DNA binding of the One Finger 1%2C DNA binding with one finger protein 1%2C Dof protein 1%2C CYCLING DOF FACTOR 3%2C Dof zinc factor 23%2C Dof transcription factor 23;Note=Dof transcription factor;Transcript_evidence=AK065816,AK104095,AK119625,AY224430;ORF_evidence=Q84PD2;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Zinc finger%2C Dof-type (IPR003851);NIAS_FLcDNA=J013041J16,001-032-E07,002-117-H10;Manual Curation=September 8%2C 2017;Literature_PMID=25850808,19210638;Oryzabase=8791;Expression=AK065816;TENOR=Os07t0685000-02;KEGG=Os07t0685000-02
Chr07	irgsp1_rep	five_prime_UTR	29081109	29081176	.	-	.	Parent=Os07t0685000-02
Chr07	irgsp1_rep	CDS	29081019	29081108	.	-	0	Parent=Os07t0685000-02
Chr07	irgsp1_rep	CDS	29077557	29078897	.	-	0	Parent=Os07t0685000-02
Chr07	irgsp1_rep	three_prime_UTR	29077209	29077556	.	-	.	Parent=Os07t0685000-02
Chr07	irgsp1_rep	mRNA	29092003	29094140	.	-	.	ID=Os07t0685300-01;Name=Os07t0685300-01;Locus_id=Os07g0685300;CGSNL Gene Symbol=DLN196;CGSNL Gene Name=DLN REPRESSOR 196;Oryzabase Gene Symbol Synonym(s)=OsDLN196;Oryzabase Gene Name Synonym(s)=DLN repressor 196%2C DLN motif protein 196;Note=Similar to Phosphate starvation regulator protein (Regulatory protein of P- starvation acclimation response Psr1).;Transcript_evidence=AK067645 (DDBJ%2C Best hit);ORF_evidence=NP_001118567.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J013112H14;Oryzabase=23220;Expression=AK067645;TENOR=Os07t0685300-01;KEGG=Os07t0685300-01
Chr07	irgsp1_rep	five_prime_UTR	29093935	29094140	.	-	.	Parent=Os07t0685300-01
Chr07	irgsp1_rep	CDS	29093917	29093934	.	-	0	Parent=Os07t0685300-01
Chr07	irgsp1_rep	CDS	29093582	29093792	.	-	0	Parent=Os07t0685300-01
Chr07	irgsp1_rep	CDS	29093407	29093483	.	-	2	Parent=Os07t0685300-01
Chr07	irgsp1_rep	CDS	29093262	29093319	.	-	0	Parent=Os07t0685300-01
Chr07	irgsp1_rep	CDS	29093082	29093172	.	-	2	Parent=Os07t0685300-01
Chr07	irgsp1_rep	CDS	29092919	29092988	.	-	1	Parent=Os07t0685300-01
Chr07	irgsp1_rep	CDS	29092279	29092791	.	-	0	Parent=Os07t0685300-01
Chr07	irgsp1_rep	three_prime_UTR	29092003	29092278	.	-	.	Parent=Os07t0685300-01
Chr07	irgsp1_rep	mRNA	29096713	29099758	.	-	.	ID=Os07t0685400-01;Name=Os07t0685400-01;Locus_id=Os07g0685400;Note=Conserved hypothetical protein.;Transcript_evidence=AK107323 (DDBJ%2C Best hit);ORF_evidence=B9FUY2 (UniProt);NIAS_FLcDNA=002-126-E08;TENOR=Os07t0685400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	29099757	29099758	.	-	.	Parent=Os07t0685400-01
Chr07	irgsp1_rep	CDS	29097950	29099756	.	-	0	Parent=Os07t0685400-01
Chr07	irgsp1_rep	CDS	29096967	29097082	.	-	2	Parent=Os07t0685400-01
Chr07	irgsp1_rep	three_prime_UTR	29096713	29096966	.	-	.	Parent=Os07t0685400-01
Chr07	irgsp1_rep	mRNA	29109903	29111790	.	+	.	ID=Os07t0685500-01;Name=Os07t0685500-01;Locus_id=Os07g0685500;Note=Alpha/beta hydrolase family protein.;Transcript_evidence=AK070883 (DDBJ%2C Best hit);ORF_evidence=B8B648 (UniProt);InterPro=Alpha/beta hydrolase fold-1 (IPR000073);NIAS_FLcDNA=J023063M21;Expression=AK070883;TENOR=Os07t0685500-01;KEGG=Os07t0685500-01
Chr07	irgsp1_rep	five_prime_UTR	29109903	29109963	.	+	.	Parent=Os07t0685500-01
Chr07	irgsp1_rep	CDS	29109964	29110393	.	+	0	Parent=Os07t0685500-01
Chr07	irgsp1_rep	CDS	29110480	29110823	.	+	2	Parent=Os07t0685500-01
Chr07	irgsp1_rep	CDS	29110912	29111108	.	+	0	Parent=Os07t0685500-01
Chr07	irgsp1_rep	CDS	29111206	29111566	.	+	1	Parent=Os07t0685500-01
Chr07	irgsp1_rep	three_prime_UTR	29111567	29111790	.	+	.	Parent=Os07t0685500-01
Chr07	irgsp1_rep	mRNA	29112296	29115391	.	+	.	ID=Os07t0685600-01;Name=Os07t0685600-01;Locus_id=Os07g0685600;Note=Conserved hypothetical protein.;Transcript_evidence=AK121312 (DDBJ%2C Best hit);ORF_evidence=XP_002327722.1 (RefSeq);NIAS_FLcDNA=J023112O04;TENOR=Os07t0685600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	29112296	29112889	.	+	.	Parent=Os07t0685600-01
Chr07	irgsp1_rep	CDS	29112890	29113117	.	+	0	Parent=Os07t0685600-01
Chr07	irgsp1_rep	three_prime_UTR	29113118	29115391	.	+	.	Parent=Os07t0685600-01
Chr07	irgsp1_rep	mRNA	29113592	29114120	.	-	.	ID=Os07t0685650-01;Name=Os07t0685650-01;Locus_id=Os07g0685650;Note=Hypothetical gene.;Transcript_evidence=AK287746 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065151L05;TENOR=Os07t0685650-01;KEGG=Os07t0685650-01
Chr07	irgsp1_rep	five_prime_UTR	29114104	29114120	.	-	.	Parent=Os07t0685650-01
Chr07	irgsp1_rep	CDS	29113813	29114103	.	-	0	Parent=Os07t0685650-01
Chr07	irgsp1_rep	three_prime_UTR	29113592	29113812	.	-	.	Parent=Os07t0685650-01
Chr07	irgsp1_rep	mRNA	29116058	29118472	.	-	.	ID=Os07t0685700-01;Name=Os07t0685700-01;Locus_id=Os07g0685700;RAP-DB Gene Symbol Synonym(s)=EIL2%2C OsEIL2;RAP-DB Gene Name Synonym(s)=ETHYLENE INSENSITIVE-LIKE GENE 2%2C EIN3-like protein 2%2C ETHYLENE INSENSITIVE3-LIKE 2%2C EIN3-LIKE 2;CGSNL Gene Symbol=EIL2;CGSNL Gene Name=ETHYLENE INSENSITIVE-LIKE GENE 2;Oryzabase Gene Symbol Synonym(s)=OsEIL2;Oryzabase Gene Name Synonym(s)=EIN3-like protein 2%2C ETHYLENE INSENSITIVE3-LIKE 2%2C EIN3-LIKE 2;Note=Transcription factor%2C Response to ethylene stimulus%2C Wound signaling;Transcript_evidence=AK060806,AB074972;ORF_evidence=Q8W3L9;GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Cellular Component: nucleus (GO:0005634);InterPro=Ethylene insensitive 3-like protein%2C DNA-binding domain (IPR023278);NIAS_FLcDNA=001-033-G01;Manual Curation=August 20%2C 2014;Literature_PMID=22977279,19798512;Oryzabase=6126;TENOR=Os07t0685700-01;KEGG=Os07t0685700-01
Chr07	irgsp1_rep	five_prime_UTR	29118390	29118472	.	-	.	Parent=Os07t0685700-01
Chr07	irgsp1_rep	five_prime_UTR	29118014	29118078	.	-	.	Parent=Os07t0685700-01
Chr07	irgsp1_rep	CDS	29116232	29118013	.	-	0	Parent=Os07t0685700-01
Chr07	irgsp1_rep	three_prime_UTR	29116058	29116231	.	-	.	Parent=Os07t0685700-01
Chr07	irgsp1_rep	mRNA	29121890	29124939	.	+	.	ID=Os07t0685800-01;Name=Os07t0685800-01;Locus_id=Os07g0685800;Note=Short-chain dehydrogenase/reductase SDR domain containing protein.;Transcript_evidence=AK064532 (DDBJ%2C Best hit);ORF_evidence=B8B650 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=002-111-H04;Expression=AK064532;TENOR=Os07t0685800-01;KEGG=Os07t0685800-01
Chr07	irgsp1_rep	five_prime_UTR	29121890	29121925	.	+	.	Parent=Os07t0685800-01
Chr07	irgsp1_rep	CDS	29121926	29122113	.	+	0	Parent=Os07t0685800-01
Chr07	irgsp1_rep	CDS	29123051	29123092	.	+	1	Parent=Os07t0685800-01
Chr07	irgsp1_rep	CDS	29123171	29123417	.	+	1	Parent=Os07t0685800-01
Chr07	irgsp1_rep	CDS	29123514	29123591	.	+	0	Parent=Os07t0685800-01
Chr07	irgsp1_rep	CDS	29124129	29124314	.	+	0	Parent=Os07t0685800-01
Chr07	irgsp1_rep	CDS	29124407	29124787	.	+	0	Parent=Os07t0685800-01
Chr07	irgsp1_rep	three_prime_UTR	29124788	29124939	.	+	.	Parent=Os07t0685800-01
Chr07	irgsp1_rep	mRNA	29130273	29132873	.	+	.	ID=Os07t0685900-01;Name=Os07t0685900-01;Locus_id=Os07g0685900;Oryzabase Gene Symbol Synonym(s)=OsSub54%2C SUB54;Oryzabase Gene Name Synonym(s)=Subtilisin 54%2C SUBTILISIN 54;Note=Peptidase S8%2C subtilisin-related domain containing protein.;Transcript_evidence=AK119348 (DDBJ%2C Best hit);ORF_evidence=Q8LIH3 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C  Asp-active site (IPR023827),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);NIAS_FLcDNA=001-131-E09;Oryzabase=20138;Expression=AK119348;TENOR=Os07t0685900-01;KEGG=Os07t0685900-01
Chr07	irgsp1_rep	five_prime_UTR	29130273	29130301	.	+	.	Parent=Os07t0685900-01
Chr07	irgsp1_rep	CDS	29130302	29132647	.	+	0	Parent=Os07t0685900-01
Chr07	irgsp1_rep	three_prime_UTR	29132648	29132873	.	+	.	Parent=Os07t0685900-01
Chr07	irgsp1_rep	mRNA	29144895	29147037	.	+	.	ID=Os07t0686100-01;Name=Os07t0686100-01;Locus_id=Os07g0686100;RAP-DB Gene Symbol Synonym(s)=OsbZIP62;RAP-DB Gene Name Synonym(s)=bZIP transcription factor 62;CGSNL Gene Symbol=BZIP62;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 62;Oryzabase Gene Symbol Synonym(s)=OsbZIP62%2C OsABF8%2C OsEEL%2C EEL;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 62%2C ENHANCED EM LEVEL;Note=Drought stress-related bZIP transcription factor%2C Positive regulation of drought and oxidative tolerance;Transcript_evidence=AK110915;ORF_evidence=Q0D3H8;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA-binding transcription factor activity (GO:0003700);InterPro=Basic-leucine zipper domain (IPR004827);NIAS_FLcDNA=002-173-C06;Manual Curation=July 4%2C 2019;Literature_PMID=31208338;Oryzabase=10143;Expression=AK110915;TENOR=Os07t0686100-01;KEGG=Os07t0686100-01;Subcellular location=nucleus (GO:0005634)
Chr07	irgsp1_rep	five_prime_UTR	29144895	29145155	.	+	.	Parent=Os07t0686100-01
Chr07	irgsp1_rep	five_prime_UTR	29145283	29145327	.	+	.	Parent=Os07t0686100-01
Chr07	irgsp1_rep	CDS	29145328	29145936	.	+	0	Parent=Os07t0686100-01
Chr07	irgsp1_rep	CDS	29146046	29146117	.	+	0	Parent=Os07t0686100-01
Chr07	irgsp1_rep	CDS	29146765	29146908	.	+	0	Parent=Os07t0686100-01
Chr07	irgsp1_rep	three_prime_UTR	29146909	29147037	.	+	.	Parent=Os07t0686100-01
Chr07	irgsp1_rep	mRNA	29152545	29153434	.	-	.	ID=Os07t0686300-01;Name=Os07t0686300-01;Locus_id=Os07g0686300;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK062636 (DDBJ%2C Best hit);ORF_evidence=NP_176569.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=001-105-D02;Expression=AK062636;TENOR=Os07t0686300-01;KEGG=Os07t0686300-01
Chr07	irgsp1_rep	five_prime_UTR	29153386	29153434	.	-	.	Parent=Os07t0686300-01
Chr07	irgsp1_rep	CDS	29152840	29153385	.	-	0	Parent=Os07t0686300-01
Chr07	irgsp1_rep	three_prime_UTR	29152545	29152839	.	-	.	Parent=Os07t0686300-01
Chr07	irgsp1_rep	mRNA	29153454	29153812	.	+	.	ID=Os07t0686366-00;Name=Os07t0686366-00;Locus_id=Os07g0686366;Note=Non-protein coding transcript.;Transcript_evidence=CT836160 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os07t0686366-00
Chr07	irgsp1_rep	exon	29153454	29153812	.	+	.	Parent=Os07t0686366-00
Chr07	irgsp1_rep	mRNA	29155932	29158729	.	-	.	ID=Os07t0686400-00;Name=Os07t0686400-00;Locus_id=Os07g0686400;Note=Conserved hypothetical protein.;Transcript_evidence=FP101530 (DDBJ);ORF_evidence=NP_001060683.2 (RefSeq);TENOR=Os07t0686400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	29157515	29158729	.	-	0	Parent=Os07t0686400-00
Chr07	irgsp1_rep	CDS	29157107	29157313	.	-	0	Parent=Os07t0686400-00
Chr07	irgsp1_rep	CDS	29155981	29156298	.	-	0	Parent=Os07t0686400-00
Chr07	irgsp1_rep	three_prime_UTR	29155932	29155980	.	-	.	Parent=Os07t0686400-00
Chr07	irgsp1_rep	mRNA	29162416	29166574	.	+	.	ID=Os07t0686500-01;Name=Os07t0686500-01;Locus_id=Os07g0686500;Note=Protein of unknown function DUF632 domain containing protein.;Transcript_evidence=AK119424 (DDBJ%2C Best hit);ORF_evidence=Q8LIG9 (UniProt);InterPro=Domain of unknown function DUF632 (IPR006867),Domain of unknown function DUF630 (IPR006868);NIAS_FLcDNA=001-132-H04;Expression=AK119424;TENOR=Os07t0686500-01;KEGG=Os07t0686500-01
Chr07	irgsp1_rep	five_prime_UTR	29162416	29162895	.	+	.	Parent=Os07t0686500-01
Chr07	irgsp1_rep	five_prime_UTR	29163095	29163123	.	+	.	Parent=Os07t0686500-01
Chr07	irgsp1_rep	CDS	29163124	29164201	.	+	0	Parent=Os07t0686500-01
Chr07	irgsp1_rep	CDS	29164290	29164364	.	+	2	Parent=Os07t0686500-01
Chr07	irgsp1_rep	CDS	29164754	29164911	.	+	2	Parent=Os07t0686500-01
Chr07	irgsp1_rep	CDS	29165292	29165515	.	+	0	Parent=Os07t0686500-01
Chr07	irgsp1_rep	CDS	29165714	29166323	.	+	1	Parent=Os07t0686500-01
Chr07	irgsp1_rep	three_prime_UTR	29166324	29166574	.	+	.	Parent=Os07t0686500-01
Chr07	irgsp1_rep	mRNA	29171078	29172225	.	+	.	ID=Os07t0686600-01;Name=Os07t0686600-01;Locus_id=Os07g0686600;Oryzabase Gene Symbol Synonym(s)=OsVQ30;Oryzabase Gene Name Synonym(s)=VQ motif-containing protein 30;Note=VQ domain containing protein.;Transcript_evidence=AK108527 (DDBJ%2C Best hit);ORF_evidence=A2YQ31 (UniProt);InterPro=VQ (IPR008889);NIAS_FLcDNA=002-144-B10;Oryzabase=13646;Expression=AK108527;TENOR=Os07t0686600-01;KEGG=Os07t0686600-01
Chr07	irgsp1_rep	five_prime_UTR	29171078	29171124	.	+	.	Parent=Os07t0686600-01
Chr07	irgsp1_rep	CDS	29171125	29171781	.	+	0	Parent=Os07t0686600-01
Chr07	irgsp1_rep	three_prime_UTR	29171782	29172225	.	+	.	Parent=Os07t0686600-01
Chr07	irgsp1_rep	mRNA	29173992	29178326	.	+	.	ID=Os07t0686700-01;Name=Os07t0686700-01;Locus_id=Os07g0686700;Note=Conserved hypothetical protein.;Transcript_evidence=AK067620 (DDBJ%2C Best hit);ORF_evidence=A3BNK3 (UniProt);NIAS_FLcDNA=J013109M11;TENOR=Os07t0686700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	29173992	29174051	.	+	.	Parent=Os07t0686700-01
Chr07	irgsp1_rep	CDS	29174052	29174283	.	+	0	Parent=Os07t0686700-01
Chr07	irgsp1_rep	CDS	29174364	29174416	.	+	2	Parent=Os07t0686700-01
Chr07	irgsp1_rep	three_prime_UTR	29174417	29174527	.	+	.	Parent=Os07t0686700-01
Chr07	irgsp1_rep	three_prime_UTR	29175432	29175544	.	+	.	Parent=Os07t0686700-01
Chr07	irgsp1_rep	three_prime_UTR	29175697	29178326	.	+	.	Parent=Os07t0686700-01
Chr07	irgsp1_rep	mRNA	29179661	29181491	.	+	.	ID=Os07t0686800-01;Name=Os07t0686800-01;Locus_id=Os07g0686800;CGSNL Gene Symbol=RLCK241;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 241;Oryzabase Gene Symbol Synonym(s)=OsRLCK241%2C PTK11%2C OsPTK11;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 241%2C Protein Tyrosine Kinase 11;Note=Similar to Serine/threonine protein kinase-like.;Transcript_evidence=AK106421 (DDBJ%2C Best hit);ORF_evidence=NP_001147807.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=002-103-B03;Oryzabase=18933;Expression=AK106421;TENOR=Os07t0686800-01;KEGG=Os07t0686800-01
Chr07	irgsp1_rep	five_prime_UTR	29179661	29179747	.	+	.	Parent=Os07t0686800-01
Chr07	irgsp1_rep	CDS	29179748	29179805	.	+	0	Parent=Os07t0686800-01
Chr07	irgsp1_rep	CDS	29179946	29180289	.	+	2	Parent=Os07t0686800-01
Chr07	irgsp1_rep	CDS	29180368	29180506	.	+	0	Parent=Os07t0686800-01
Chr07	irgsp1_rep	CDS	29180606	29181046	.	+	2	Parent=Os07t0686800-01
Chr07	irgsp1_rep	CDS	29181165	29181238	.	+	2	Parent=Os07t0686800-01
Chr07	irgsp1_rep	three_prime_UTR	29181239	29181491	.	+	.	Parent=Os07t0686800-01
Chr07	irgsp1_rep	mRNA	29180821	29181216	.	-	.	ID=Os07t0686825-00;Name=Os07t0686825-00;Locus_id=Os07g0686825;Note=Hypothetical protein.;Transcript_evidence=EU951577 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0686825-00
Chr07	irgsp1_rep	CDS	29180821	29181216	.	-	0	Parent=Os07t0686825-00
Chr07	irgsp1_rep	mRNA	29183671	29188455	.	+	.	ID=Os07t0686900-01;Name=Os07t0686900-01;Locus_id=Os07g0686900;Oryzabase Gene Symbol Synonym(s)=OsARAF1;Oryzabase Gene Name Synonym(s)=Arabinofuranosidase 1;Note=Similar to Alpha-L-arabinofuranosidase C-terminus family protein%2C expressed.;Transcript_evidence=AK064838 (DDBJ%2C Best hit);ORF_evidence=Q10M79 (UniProt);NIAS_FLcDNA=J013000F23;Oryzabase=15036;TENOR=Os07t0686900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	29183671	29183695	.	+	.	Parent=Os07t0686900-01
Chr07	irgsp1_rep	CDS	29183696	29183872	.	+	0	Parent=Os07t0686900-01
Chr07	irgsp1_rep	CDS	29184227	29184281	.	+	0	Parent=Os07t0686900-01
Chr07	irgsp1_rep	CDS	29184415	29184626	.	+	2	Parent=Os07t0686900-01
Chr07	irgsp1_rep	CDS	29184779	29184900	.	+	0	Parent=Os07t0686900-01
Chr07	irgsp1_rep	CDS	29184984	29185137	.	+	1	Parent=Os07t0686900-01
Chr07	irgsp1_rep	CDS	29185215	29185247	.	+	0	Parent=Os07t0686900-01
Chr07	irgsp1_rep	three_prime_UTR	29185248	29185496	.	+	.	Parent=Os07t0686900-01
Chr07	irgsp1_rep	three_prime_UTR	29185585	29185730	.	+	.	Parent=Os07t0686900-01
Chr07	irgsp1_rep	three_prime_UTR	29185816	29185861	.	+	.	Parent=Os07t0686900-01
Chr07	irgsp1_rep	three_prime_UTR	29185944	29185996	.	+	.	Parent=Os07t0686900-01
Chr07	irgsp1_rep	three_prime_UTR	29186092	29186236	.	+	.	Parent=Os07t0686900-01
Chr07	irgsp1_rep	three_prime_UTR	29186523	29186641	.	+	.	Parent=Os07t0686900-01
Chr07	irgsp1_rep	three_prime_UTR	29186749	29186820	.	+	.	Parent=Os07t0686900-01
Chr07	irgsp1_rep	three_prime_UTR	29186914	29187017	.	+	.	Parent=Os07t0686900-01
Chr07	irgsp1_rep	three_prime_UTR	29187273	29187329	.	+	.	Parent=Os07t0686900-01
Chr07	irgsp1_rep	three_prime_UTR	29187439	29187637	.	+	.	Parent=Os07t0686900-01
Chr07	irgsp1_rep	three_prime_UTR	29187747	29187890	.	+	.	Parent=Os07t0686900-01
Chr07	irgsp1_rep	three_prime_UTR	29187996	29188455	.	+	.	Parent=Os07t0686900-01
Chr07	irgsp1_rep	mRNA	29187826	29188369	.	-	.	ID=Os07t0686950-01;Name=Os07t0686950-01;Locus_id=Os07g0686950;Note=Hypothetical gene.;Transcript_evidence=AK241535 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065173D08;TENOR=Os07t0686950-01
Chr07	irgsp1_rep	five_prime_UTR	29188298	29188369	.	-	.	Parent=Os07t0686950-01
Chr07	irgsp1_rep	five_prime_UTR	29188112	29188163	.	-	.	Parent=Os07t0686950-01
Chr07	irgsp1_rep	CDS	29187826	29188111	.	-	0	Parent=Os07t0686950-01
Chr07	irgsp1_rep	mRNA	29191197	29194187	.	+	.	ID=Os07t0687000-01;Name=Os07t0687000-01;Locus_id=Os07g0687000;RAP-DB Gene Symbol Synonym(s)=CIPK03%2C OsCIPK03%2C CIPK3%2C OsCIPK3;RAP-DB Gene Name Synonym(s)=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 3%2C CBL-interacting protein kinase 3;CGSNL Gene Symbol=CIPK03;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 3;Oryzabase Gene Symbol Synonym(s)=OsCIPK03%2C CIPK3%2C OsCIPK3;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 3;Note=Serine/threonine protein kinase%2C Abiotic stresses;Transcript_evidence=AP003818_BAC10350_43;ORF_evidence=Q8LIG4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),NAF domain (IPR004041),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),NAF/FISL domain (IPR018451),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Manual Curation=September 30%2C 2010;Literature_PMID=14730064,20652492;Oryzabase=7390;TENOR=Os07t0687000-00;KEGG=Os07t0687000-00 (EC:2.7.11.11)
Chr07	irgsp1_rep	five_prime_UTR	29191197	29191231	.	+	.	Parent=Os07t0687000-01
Chr07	irgsp1_rep	CDS	29191232	29191420	.	+	0	Parent=Os07t0687000-01
Chr07	irgsp1_rep	CDS	29191577	29191639	.	+	0	Parent=Os07t0687000-01
Chr07	irgsp1_rep	CDS	29191774	29191845	.	+	0	Parent=Os07t0687000-01
Chr07	irgsp1_rep	CDS	29191989	29192096	.	+	0	Parent=Os07t0687000-01
Chr07	irgsp1_rep	CDS	29192193	29192273	.	+	0	Parent=Os07t0687000-01
Chr07	irgsp1_rep	CDS	29192396	29192449	.	+	0	Parent=Os07t0687000-01
Chr07	irgsp1_rep	CDS	29192534	29192659	.	+	0	Parent=Os07t0687000-01
Chr07	irgsp1_rep	CDS	29192740	29192829	.	+	0	Parent=Os07t0687000-01
Chr07	irgsp1_rep	CDS	29193022	29193144	.	+	0	Parent=Os07t0687000-01
Chr07	irgsp1_rep	CDS	29193245	29193355	.	+	0	Parent=Os07t0687000-01
Chr07	irgsp1_rep	CDS	29193505	29193618	.	+	0	Parent=Os07t0687000-01
Chr07	irgsp1_rep	CDS	29193792	29193848	.	+	0	Parent=Os07t0687000-01
Chr07	irgsp1_rep	CDS	29193928	29194002	.	+	0	Parent=Os07t0687000-01
Chr07	irgsp1_rep	CDS	29194104	29194178	.	+	0	Parent=Os07t0687000-01
Chr07	irgsp1_rep	three_prime_UTR	29194179	29194187	.	+	.	Parent=Os07t0687000-01
Chr07	irgsp1_rep	mRNA	29195160	29197462	.	-	.	ID=Os07t0687100-01;Name=Os07t0687100-01;Locus_id=Os07g0687100;Note=Protein of unknown function DUF341 family protein.;Transcript_evidence=AK066780 (DDBJ%2C Best hit);ORF_evidence=E4MW38 (UniProt);InterPro=Serine hydrolase FSH (IPR005645);NIAS_FLcDNA=J013075J07;Expression=AK066780;TENOR=Os07t0687100-01;KEGG=Os07t0687100-01
Chr07	irgsp1_rep	five_prime_UTR	29197437	29197462	.	-	.	Parent=Os07t0687100-01
Chr07	irgsp1_rep	CDS	29197320	29197436	.	-	0	Parent=Os07t0687100-01
Chr07	irgsp1_rep	CDS	29197153	29197245	.	-	0	Parent=Os07t0687100-01
Chr07	irgsp1_rep	CDS	29196890	29196988	.	-	0	Parent=Os07t0687100-01
Chr07	irgsp1_rep	CDS	29196329	29196370	.	-	0	Parent=Os07t0687100-01
Chr07	irgsp1_rep	CDS	29195690	29195921	.	-	0	Parent=Os07t0687100-01
Chr07	irgsp1_rep	CDS	29195407	29195567	.	-	2	Parent=Os07t0687100-01
Chr07	irgsp1_rep	three_prime_UTR	29195160	29195406	.	-	.	Parent=Os07t0687100-01
Chr07	irgsp1_rep	mRNA	29195074	29197457	.	-	.	ID=Os07t0687100-02;Name=Os07t0687100-02;Locus_id=Os07g0687100;Note=Protein of unknown function DUF341 domain containing protein.;Transcript_evidence=AK062162 (DDBJ%2C Best hit);ORF_evidence=E4MW38 (UniProt);InterPro=Serine hydrolase FSH (IPR005645);NIAS_FLcDNA=001-046-B03;Expression=AK062162;TENOR=Os07t0687100-02;KEGG=Os07t0687100-02
Chr07	irgsp1_rep	five_prime_UTR	29197437	29197457	.	-	.	Parent=Os07t0687100-02
Chr07	irgsp1_rep	CDS	29197320	29197436	.	-	0	Parent=Os07t0687100-02
Chr07	irgsp1_rep	CDS	29197153	29197245	.	-	0	Parent=Os07t0687100-02
Chr07	irgsp1_rep	CDS	29196890	29196988	.	-	0	Parent=Os07t0687100-02
Chr07	irgsp1_rep	CDS	29196356	29196370	.	-	0	Parent=Os07t0687100-02
Chr07	irgsp1_rep	CDS	29196329	29196349	.	-	0	Parent=Os07t0687100-02
Chr07	irgsp1_rep	CDS	29195690	29195921	.	-	0	Parent=Os07t0687100-02
Chr07	irgsp1_rep	CDS	29195407	29195567	.	-	2	Parent=Os07t0687100-02
Chr07	irgsp1_rep	three_prime_UTR	29195074	29195406	.	-	.	Parent=Os07t0687100-02
Chr07	irgsp1_rep	mRNA	29198848	29200317	.	-	.	ID=Os07t0687200-01;Name=Os07t0687200-01;Locus_id=Os07g0687200;CGSNL Gene Symbol=CALB;CGSNL Gene Name=CALMODULIN B;Oryzabase Gene Symbol Synonym(s)=CALb*%2C Cal2%2C CAM1-2%2C CAM%2C CaM-1%2C OsCam1-2%2C OsCaM1-2;Oryzabase Gene Name Synonym(s)=Calmodulin-2%2C Calmodulin-b%2C Calmodulin-1%2C Calmodulin 1-2;Note=Similar to Auxin-regulated calmodulin.;Transcript_evidence=AK063566 (DDBJ%2C Best hit);ORF_evidence=NP_001167666.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand-like domain (IPR011992);NIAS_FLcDNA=001-117-F09;Oryzabase=775;Expression=AK063566;TENOR=Os07t0687200-01;KEGG=Os07t0687200-01
Chr07	irgsp1_rep	five_prime_UTR	29200229	29200317	.	-	.	Parent=Os07t0687200-01
Chr07	irgsp1_rep	CDS	29199872	29200228	.	-	0	Parent=Os07t0687200-01
Chr07	irgsp1_rep	three_prime_UTR	29198848	29199871	.	-	.	Parent=Os07t0687200-01
Chr07	irgsp1_rep	mRNA	29197781	29200240	.	-	.	ID=Os07t0687200-02;Name=Os07t0687200-02;Locus_id=Os07g0687200;RAP-DB Gene Symbol Synonym(s)=OsCam1-2%2C OsCaM1;RAP-DB Gene Name Synonym(s)=calmodulin 1-2;CGSNL Gene Symbol=CALB;CGSNL Gene Name=CALMODULIN B;Oryzabase Gene Symbol Synonym(s)=CALb*%2C Cal2%2C CAM1-2%2C CAM%2C CaM-1%2C OsCam1-2%2C OsCaM1-2;Oryzabase Gene Name Synonym(s)=Calmodulin-2%2C Calmodulin-b%2C Calmodulin-1%2C Calmodulin 1-2;Note=Calmodulin%2C Ca<sup>2+</sup> sensor%2C Ca<sup>2+</sup> signalling;Transcript_evidence=AK071852,AF441191;ORF_evidence=Q0JNS6;GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand domain pair (IPR011992),Phosphoglycolate phosphatase%2C domain 2 (IPR023198),EF-hand domain (IPR002048),EF-Hand 1%2C calcium-binding site (IPR018247);NIAS_FLcDNA=J023117O08;Manual Curation=December 19%2C 2017;Literature_PMID=22428987,17263873;Oryzabase=775;Expression=AK071852;TENOR=Os07t0687200-02
Chr07	irgsp1_rep	five_prime_UTR	29200229	29200240	.	-	.	Parent=Os07t0687200-02
Chr07	irgsp1_rep	CDS	29200153	29200228	.	-	0	Parent=Os07t0687200-02
Chr07	irgsp1_rep	CDS	29198049	29198422	.	-	2	Parent=Os07t0687200-02
Chr07	irgsp1_rep	three_prime_UTR	29197781	29198048	.	-	.	Parent=Os07t0687200-02
Chr07	irgsp1_rep	mRNA	29197781	29198414	.	-	.	ID=Os07t0687200-03;Name=Os07t0687200-03;Locus_id=Os07g0687200;CGSNL Gene Symbol=CALB;CGSNL Gene Name=CALMODULIN B;Oryzabase Gene Symbol Synonym(s)=CALb*%2C Cal2%2C CAM1-2%2C CAM%2C CaM-1%2C OsCam1-2%2C OsCaM1-2;Oryzabase Gene Name Synonym(s)=Calmodulin-2%2C Calmodulin-b%2C Calmodulin-1%2C Calmodulin 1-2;Note=Similar to CAM7 (CALMODULIN 7)%3B calcium ion binding.;Transcript_evidence=AK104031 (DDBJ%2C Best hit);ORF_evidence=NP_850344.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=001-020-D10;Oryzabase=775;Expression=AK104031;TENOR=Os07t0687200-03;KEGG=Os07t0687200-03
Chr07	irgsp1_rep	CDS	29198049	29198414	.	-	0	Parent=Os07t0687200-03
Chr07	irgsp1_rep	three_prime_UTR	29197781	29198048	.	-	.	Parent=Os07t0687200-03
Chr07	irgsp1_rep	mRNA	29201996	29204556	.	-	.	ID=Os07t0687300-01;Name=Os07t0687300-01;Locus_id=Os07g0687300;Note=Similar to SNF1 kinase complex anchoring protein (Fragment).;Transcript_evidence=AK073043 (DDBJ%2C Best hit);ORF_evidence=NP_001149540.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=5-AMP-activated protein kinase%2C beta subunit%2C interaction domain (IPR006828);NIAS_FLcDNA=J023150G03;Expression=AK073043;TENOR=Os07t0687300-01;KEGG=Os07t0687300-01
Chr07	irgsp1_rep	five_prime_UTR	29204556	29204556	.	-	.	Parent=Os07t0687300-01
Chr07	irgsp1_rep	CDS	29204286	29204555	.	-	0	Parent=Os07t0687300-01
Chr07	irgsp1_rep	CDS	29203422	29203606	.	-	0	Parent=Os07t0687300-01
Chr07	irgsp1_rep	CDS	29203142	29203304	.	-	1	Parent=Os07t0687300-01
Chr07	irgsp1_rep	CDS	29202263	29202595	.	-	0	Parent=Os07t0687300-01
Chr07	irgsp1_rep	three_prime_UTR	29201996	29202262	.	-	.	Parent=Os07t0687300-01
Chr07	irgsp1_rep	mRNA	29206934	29207571	.	-	.	ID=Os07t0687400-00;Name=Os07t0687400-00;Locus_id=Os07g0687400;Oryzabase Gene Symbol Synonym(s)=OsVQ31;Oryzabase Gene Name Synonym(s)=VQ motif-containing protein 31;Note=Similar to VQ motif family protein%2C expressed.;Transcript_evidence=CT836093 (DDBJ%2C Best hit);ORF_evidence=Q10M91 (UniProt);InterPro=VQ (IPR008889);Oryzabase=13647;TENOR=Os07t0687400-00;KEGG=Os07t0687400-00
Chr07	irgsp1_rep	five_prime_UTR	29207543	29207571	.	-	.	Parent=Os07t0687400-00
Chr07	irgsp1_rep	CDS	29207129	29207542	.	-	0	Parent=Os07t0687400-00
Chr07	irgsp1_rep	three_prime_UTR	29206934	29207128	.	-	.	Parent=Os07t0687400-00
Chr07	irgsp1_rep	mRNA	29209556	29212668	.	+	.	ID=Os07t0687500-01;Name=Os07t0687500-01;Locus_id=Os07g0687500;CGSNL Gene Symbol=STR16;CGSNL Gene Name=SULFURTRANSFERASE 16;Oryzabase Gene Symbol Synonym(s)=OsStr16;Oryzabase Gene Name Synonym(s)=Sulfurtransferase 16;Note=Rhodanese-like domain containing protein.;Transcript_evidence=AK073511 (DDBJ%2C Best hit);ORF_evidence=B6SS56 (UniProt);GO=Molecular Function: isomerase activity (GO:0016853);InterPro=Peptidyl-prolyl cis-trans isomerase%2C PpiC-type (IPR000297),Rhodanese-like (IPR001763);NIAS_FLcDNA=J033041I16;Oryzabase=12066;Expression=AK073511;TENOR=Os07t0687500-01;KEGG=Os07t0687500-01
Chr07	irgsp1_rep	five_prime_UTR	29209556	29209653	.	+	.	Parent=Os07t0687500-01
Chr07	irgsp1_rep	CDS	29209654	29209894	.	+	0	Parent=Os07t0687500-01
Chr07	irgsp1_rep	CDS	29210132	29210254	.	+	2	Parent=Os07t0687500-01
Chr07	irgsp1_rep	CDS	29210362	29210453	.	+	2	Parent=Os07t0687500-01
Chr07	irgsp1_rep	CDS	29211155	29211255	.	+	0	Parent=Os07t0687500-01
Chr07	irgsp1_rep	CDS	29211330	29211440	.	+	1	Parent=Os07t0687500-01
Chr07	irgsp1_rep	CDS	29211832	29211940	.	+	1	Parent=Os07t0687500-01
Chr07	irgsp1_rep	CDS	29212167	29212217	.	+	0	Parent=Os07t0687500-01
Chr07	irgsp1_rep	CDS	29212336	29212416	.	+	0	Parent=Os07t0687500-01
Chr07	irgsp1_rep	three_prime_UTR	29212417	29212668	.	+	.	Parent=Os07t0687500-01
Chr07	irgsp1_rep	mRNA	29211335	29212668	.	+	.	ID=Os07t0687500-02;Name=Os07t0687500-02;Locus_id=Os07g0687500;CGSNL Gene Symbol=STR16;CGSNL Gene Name=SULFURTRANSFERASE 16;Oryzabase Gene Symbol Synonym(s)=OsStr16;Oryzabase Gene Name Synonym(s)=Sulfurtransferase 16;Note=Similar to Isomerase.;Transcript_evidence=AK103992 (DDBJ%2C Best hit);ORF_evidence=B6SS56 (UniProt);InterPro=Rhodanese-like (IPR001763);NIAS_FLcDNA=001-018-C08;Oryzabase=12066;Expression=AK103992;TENOR=Os07t0687500-02;KEGG=Os07t0687500-02
Chr07	irgsp1_rep	five_prime_UTR	29211335	29211336	.	+	.	Parent=Os07t0687500-02
Chr07	irgsp1_rep	CDS	29211337	29211440	.	+	0	Parent=Os07t0687500-02
Chr07	irgsp1_rep	CDS	29211832	29211940	.	+	1	Parent=Os07t0687500-02
Chr07	irgsp1_rep	CDS	29212167	29212217	.	+	0	Parent=Os07t0687500-02
Chr07	irgsp1_rep	CDS	29212336	29212416	.	+	0	Parent=Os07t0687500-02
Chr07	irgsp1_rep	three_prime_UTR	29212417	29212668	.	+	.	Parent=Os07t0687500-02
Chr07	irgsp1_rep	mRNA	29213488	29217245	.	+	.	ID=Os07t0687700-01;Name=Os07t0687700-01;Locus_id=Os07g0687700;CGSNL Gene Symbol=BZIP63;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 63;Oryzabase Gene Symbol Synonym(s)=OsbZIP63;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 63;Note=Similar to Transcription factor HBP-1b(C38) (Fragment).;Transcript_evidence=AK100440 (DDBJ%2C Best hit);ORF_evidence=Q8W5R9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);NIAS_FLcDNA=J023089F16;Oryzabase=10144;Expression=AK100440;TENOR=Os07t0687700-01;KEGG=Os07t0687700-01
Chr07	irgsp1_rep	five_prime_UTR	29213488	29213792	.	+	.	Parent=Os07t0687700-01
Chr07	irgsp1_rep	five_prime_UTR	29214094	29214187	.	+	.	Parent=Os07t0687700-01
Chr07	irgsp1_rep	five_prime_UTR	29214413	29214531	.	+	.	Parent=Os07t0687700-01
Chr07	irgsp1_rep	CDS	29214532	29214597	.	+	0	Parent=Os07t0687700-01
Chr07	irgsp1_rep	CDS	29215003	29215086	.	+	0	Parent=Os07t0687700-01
Chr07	irgsp1_rep	CDS	29215173	29215232	.	+	0	Parent=Os07t0687700-01
Chr07	irgsp1_rep	CDS	29215493	29215570	.	+	0	Parent=Os07t0687700-01
Chr07	irgsp1_rep	CDS	29215666	29215717	.	+	0	Parent=Os07t0687700-01
Chr07	irgsp1_rep	CDS	29215854	29216125	.	+	2	Parent=Os07t0687700-01
Chr07	irgsp1_rep	CDS	29216224	29216466	.	+	0	Parent=Os07t0687700-01
Chr07	irgsp1_rep	CDS	29216607	29216756	.	+	0	Parent=Os07t0687700-01
Chr07	irgsp1_rep	three_prime_UTR	29216757	29217245	.	+	.	Parent=Os07t0687700-01
Chr07	irgsp1_rep	mRNA	29220339	29221843	.	-	.	ID=Os07t0687900-01;Name=Os07t0687900-01;Locus_id=Os07g0687900;RAP-DB Gene Symbol Synonym(s)=OsGolS2%2C wsi76%2C WSI76%2C OsGolS1;RAP-DB Gene Name Synonym(s)=galactinol synthase 2%2C water stress-induced 76%2C galactinol synthase 1;CGSNL Gene Symbol=WSI76;CGSNL Gene Name=WATER STRESS INDUCIBLE PROTEIN 76;Oryzabase Gene Symbol Synonym(s)=wsi76%2C OsLEA24/OsGolS2%2C OsGolS2/OsLEA24%2C OsLEA24%2C OsGolS2%2C GolS2%2C LEA24%2C OsGolS1%2C GolS1;Oryzabase Gene Name Synonym(s)=water stress-induced 76%2C GALACTINOL SYNTHASE 2%2C galactinol synthase 1;Note=Galactinol synthase%2C WSI76 protein induced by water stress%2C Salt stress response;Transcript_evidence=AK107065,AK099548;ORF_evidence=Q40710;GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Nucleotide-diphospho-sugar transferases (IPR029044),Glycosyl transferase%2C family 8 (IPR002495);NIAS_FLcDNA=002-121-E05,J013033D21;Manual Curation=March 12%2C 2020;Literature_PMID=31096659,30465114,7948880;Oryzabase=13341;TENOR=Os07t0687900-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	29221741	29221843	.	-	.	Parent=Os07t0687900-01
Chr07	irgsp1_rep	CDS	29220967	29221740	.	-	0	Parent=Os07t0687900-01
Chr07	irgsp1_rep	CDS	29220656	29220868	.	-	0	Parent=Os07t0687900-01
Chr07	irgsp1_rep	three_prime_UTR	29220339	29220655	.	-	.	Parent=Os07t0687900-01
Chr07	irgsp1_rep	mRNA	29225285	29227664	.	+	.	ID=Os07t0688000-01;Name=Os07t0688000-01;Locus_id=Os07g0688000;Oryzabase Gene Symbol Synonym(s)=OsNRT3.2;Oryzabase Gene Name Synonym(s)=nitrate transporter 3.2;Note=Metallophosphoesterase domain containing protein.;Transcript_evidence=AK069836 (DDBJ%2C Best hit);ORF_evidence=NP_974609.1 (RefSeq);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Metallophosphoesterase domain (IPR004843);NIAS_FLcDNA=J023031I12;Oryzabase=19905;Expression=AK069836;TENOR=Os07t0688000-01;KEGG=Os07t0688000-01
Chr07	irgsp1_rep	five_prime_UTR	29225285	29225673	.	+	.	Parent=Os07t0688000-01
Chr07	irgsp1_rep	five_prime_UTR	29226367	29226380	.	+	.	Parent=Os07t0688000-01
Chr07	irgsp1_rep	CDS	29226381	29227346	.	+	0	Parent=Os07t0688000-01
Chr07	irgsp1_rep	three_prime_UTR	29227347	29227664	.	+	.	Parent=Os07t0688000-01
Chr07	irgsp1_rep	mRNA	29225304	29228501	.	+	.	ID=Os07t0688000-02;Name=Os07t0688000-02;Locus_id=Os07g0688000;Oryzabase Gene Symbol Synonym(s)=OsNRT3.2;Oryzabase Gene Name Synonym(s)=nitrate transporter 3.2;Note=Metallophosphoesterase domain containing protein.;Transcript_evidence=AK106965 (DDBJ%2C Best hit);ORF_evidence=NP_974609.1 (RefSeq);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Metallophosphoesterase domain (IPR004843);NIAS_FLcDNA=002-119-F10;Oryzabase=19905;Expression=AK106965;TENOR=Os07t0688000-02;KEGG=Os07t0688000-02
Chr07	irgsp1_rep	five_prime_UTR	29225304	29225559	.	+	.	Parent=Os07t0688000-02
Chr07	irgsp1_rep	five_prime_UTR	29226367	29226380	.	+	.	Parent=Os07t0688000-02
Chr07	irgsp1_rep	CDS	29226381	29227346	.	+	0	Parent=Os07t0688000-02
Chr07	irgsp1_rep	three_prime_UTR	29227347	29227561	.	+	.	Parent=Os07t0688000-02
Chr07	irgsp1_rep	three_prime_UTR	29227993	29228501	.	+	.	Parent=Os07t0688000-02
Chr07	irgsp1_rep	mRNA	29228000	29232760	.	-	.	ID=Os07t0688100-01;Name=Os07t0688100-01;Locus_id=Os07g0688100;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK101635 (DDBJ%2C Best hit);ORF_evidence=B8B6C4 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J033055B02;Expression=AK101635;TENOR=Os07t0688100-01;KEGG=Os07t0688100-01
Chr07	irgsp1_rep	five_prime_UTR	29232527	29232760	.	-	.	Parent=Os07t0688100-01
Chr07	irgsp1_rep	CDS	29230529	29232526	.	-	0	Parent=Os07t0688100-01
Chr07	irgsp1_rep	three_prime_UTR	29230309	29230528	.	-	.	Parent=Os07t0688100-01
Chr07	irgsp1_rep	three_prime_UTR	29229632	29229879	.	-	.	Parent=Os07t0688100-01
Chr07	irgsp1_rep	three_prime_UTR	29228000	29229477	.	-	.	Parent=Os07t0688100-01
Chr07	irgsp1_rep	mRNA	29242089	29243584	.	+	.	ID=Os07t0688200-01;Name=Os07t0688200-01;Locus_id=Os07g0688200;Oryzabase Gene Symbol Synonym(s)=R2R3-MYB;Oryzabase Gene Name Synonym(s)=MYB transcription factor;Note=Similar to Typical P-type R2R3 Myb protein (Fragment).;Transcript_evidence=AK103455 (DDBJ%2C Best hit);ORF_evidence=Q8S3Y6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J033129J22;Oryzabase=16188;Expression=AK103455;TENOR=Os07t0688200-01;KEGG=Os07t0688200-01
Chr07	irgsp1_rep	five_prime_UTR	29242089	29242139	.	+	.	Parent=Os07t0688200-01
Chr07	irgsp1_rep	CDS	29242140	29242293	.	+	0	Parent=Os07t0688200-01
Chr07	irgsp1_rep	CDS	29242371	29243119	.	+	2	Parent=Os07t0688200-01
Chr07	irgsp1_rep	three_prime_UTR	29243120	29243584	.	+	.	Parent=Os07t0688200-01
Chr07	irgsp1_rep	mRNA	29247838	29251970	.	-	.	ID=Os07t0688300-01;Name=Os07t0688300-01;Locus_id=Os07g0688300;Note=Similar to Importin alpha 1.;Transcript_evidence=AK068325 (DDBJ%2C Best hit);ORF_evidence=NP_001149981.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013146I03;Expression=AK068325;TENOR=Os07t0688300-01;KEGG=Os07t0688300-01
Chr07	irgsp1_rep	five_prime_UTR	29251591	29251970	.	-	.	Parent=Os07t0688300-01
Chr07	irgsp1_rep	five_prime_UTR	29251087	29251090	.	-	.	Parent=Os07t0688300-01
Chr07	irgsp1_rep	CDS	29250990	29251086	.	-	0	Parent=Os07t0688300-01
Chr07	irgsp1_rep	CDS	29250815	29250906	.	-	2	Parent=Os07t0688300-01
Chr07	irgsp1_rep	CDS	29250599	29250724	.	-	0	Parent=Os07t0688300-01
Chr07	irgsp1_rep	CDS	29250332	29250514	.	-	0	Parent=Os07t0688300-01
Chr07	irgsp1_rep	CDS	29250086	29250249	.	-	0	Parent=Os07t0688300-01
Chr07	irgsp1_rep	CDS	29249912	29249990	.	-	1	Parent=Os07t0688300-01
Chr07	irgsp1_rep	CDS	29249388	29249516	.	-	0	Parent=Os07t0688300-01
Chr07	irgsp1_rep	CDS	29249130	29249257	.	-	0	Parent=Os07t0688300-01
Chr07	irgsp1_rep	CDS	29248615	29249005	.	-	1	Parent=Os07t0688300-01
Chr07	irgsp1_rep	three_prime_UTR	29248612	29248614	.	-	.	Parent=Os07t0688300-01
Chr07	irgsp1_rep	three_prime_UTR	29247838	29248477	.	-	.	Parent=Os07t0688300-01
Chr07	irgsp1_rep	mRNA	29248467	29251968	.	-	.	ID=Os07t0688300-02;Name=Os07t0688300-02;Locus_id=Os07g0688300;Note=Similar to Importin alpha 1.;Transcript_evidence=AK099611 (DDBJ%2C Best hit);ORF_evidence=NP_001149981.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013049L13;Expression=AK099611;TENOR=Os07t0688300-02;KEGG=Os07t0688300-02
Chr07	irgsp1_rep	five_prime_UTR	29251591	29251968	.	-	.	Parent=Os07t0688300-02
Chr07	irgsp1_rep	five_prime_UTR	29251087	29251090	.	-	.	Parent=Os07t0688300-02
Chr07	irgsp1_rep	CDS	29250990	29251086	.	-	0	Parent=Os07t0688300-02
Chr07	irgsp1_rep	CDS	29250815	29250906	.	-	2	Parent=Os07t0688300-02
Chr07	irgsp1_rep	CDS	29250599	29250724	.	-	0	Parent=Os07t0688300-02
Chr07	irgsp1_rep	CDS	29250332	29250514	.	-	0	Parent=Os07t0688300-02
Chr07	irgsp1_rep	CDS	29250086	29250249	.	-	0	Parent=Os07t0688300-02
Chr07	irgsp1_rep	CDS	29249912	29249990	.	-	1	Parent=Os07t0688300-02
Chr07	irgsp1_rep	CDS	29249388	29249516	.	-	0	Parent=Os07t0688300-02
Chr07	irgsp1_rep	CDS	29249130	29249257	.	-	0	Parent=Os07t0688300-02
Chr07	irgsp1_rep	CDS	29248615	29249005	.	-	1	Parent=Os07t0688300-02
Chr07	irgsp1_rep	three_prime_UTR	29248467	29248614	.	-	.	Parent=Os07t0688300-02
Chr07	irgsp1_rep	mRNA	29254446	29259496	.	+	.	ID=Os07t0688500-00;Name=Os07t0688500-00;Locus_id=Os07g0688500;Note=Similar to Poly.;Transcript_evidence=CT836073 (DDBJ%2C Best hit);ORF_evidence=B6UBW8 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Biological Process: RNA 3'-end processing (GO:0031123),Biological Process: RNA polyadenylation (GO:0043631),Cellular Component: nucleus (GO:0005634),Molecular Function: RNA binding (GO:0003723),Molecular Function: polynucleotide adenylyltransferase activity (GO:0004652),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=Nucleotidyl transferase domain (IPR002934),Poly(A) polymerase%2C RNA-binding domain (IPR007010),Poly(A) polymerase%2C central domain (IPR007012),Nucleotidyltransferase%2C class I%2C C-terminal-like (IPR011068);TENOR=Os07t0688500-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	29254446	29254564	.	+	.	Parent=Os07t0688500-00
Chr07	irgsp1_rep	CDS	29254565	29254771	.	+	0	Parent=Os07t0688500-00
Chr07	irgsp1_rep	CDS	29254872	29254949	.	+	0	Parent=Os07t0688500-00
Chr07	irgsp1_rep	CDS	29255020	29255118	.	+	0	Parent=Os07t0688500-00
Chr07	irgsp1_rep	CDS	29256536	29256598	.	+	0	Parent=Os07t0688500-00
Chr07	irgsp1_rep	CDS	29256679	29256838	.	+	0	Parent=Os07t0688500-00
Chr07	irgsp1_rep	CDS	29256935	29257050	.	+	2	Parent=Os07t0688500-00
Chr07	irgsp1_rep	CDS	29257322	29257384	.	+	0	Parent=Os07t0688500-00
Chr07	irgsp1_rep	CDS	29257490	29257786	.	+	0	Parent=Os07t0688500-00
Chr07	irgsp1_rep	CDS	29258352	29258513	.	+	0	Parent=Os07t0688500-00
Chr07	irgsp1_rep	CDS	29258639	29258968	.	+	0	Parent=Os07t0688500-00
Chr07	irgsp1_rep	three_prime_UTR	29258969	29259496	.	+	.	Parent=Os07t0688500-00
Chr07	irgsp1_rep	mRNA	29268639	29269922	.	-	.	ID=Os07t0688700-00;Name=Os07t0688700-00;Locus_id=Os07g0688700;Note=Hypothetical protein.;Transcript_evidence=AK360624 (DDBJ);ORF_evidence=GeneMark;TENOR=Os07t0688700-00
Chr07	irgsp1_rep	five_prime_UTR	29269479	29269922	.	-	.	Parent=Os07t0688700-00
Chr07	irgsp1_rep	CDS	29268639	29269478	.	-	0	Parent=Os07t0688700-00
Chr07	irgsp1_rep	mRNA	29271588	29277743	.	-	.	ID=Os07t0688800-01;Name=Os07t0688800-01;Locus_id=Os07g0688800;CGSNL Gene Symbol=ALDH22A1;CGSNL Gene Name=ALDEHYDE DEHYDROGENASE 22A1;Oryzabase Gene Symbol Synonym(s)=OsALDH22%2C ALDH22%2C OsALDH22A1;Oryzabase Gene Name Synonym(s)=aldehyde dehydrogenase 22%2C rice homolog of Arabidopsis ALDH22;Note=Aldehyde dehydrogenase domain containing protein.;Transcript_evidence=AK068462 (DDBJ%2C Best hit);ORF_evidence=A7LHM3 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620);InterPro=Aldehyde dehydrogenase domain (IPR015590),Aldehyde dehydrogenase%2C conserved site (IPR016160),Aldehyde/histidinol dehydrogenase (IPR016161),Aldehyde dehydrogenase%2C N-terminal (IPR016162),Aldehyde dehydrogenase%2C C-terminal (IPR016163);NIAS_FLcDNA=J013155B06;Oryzabase=14368;Expression=AK068462;TENOR=Os07t0688800-01;KEGG=Os07t0688800-01
Chr07	irgsp1_rep	five_prime_UTR	29277495	29277743	.	-	.	Parent=Os07t0688800-01
Chr07	irgsp1_rep	CDS	29277383	29277494	.	-	0	Parent=Os07t0688800-01
Chr07	irgsp1_rep	CDS	29277209	29277252	.	-	2	Parent=Os07t0688800-01
Chr07	irgsp1_rep	CDS	29276247	29276351	.	-	0	Parent=Os07t0688800-01
Chr07	irgsp1_rep	CDS	29275869	29275996	.	-	0	Parent=Os07t0688800-01
Chr07	irgsp1_rep	CDS	29275554	29275676	.	-	1	Parent=Os07t0688800-01
Chr07	irgsp1_rep	CDS	29274782	29274935	.	-	1	Parent=Os07t0688800-01
Chr07	irgsp1_rep	CDS	29274328	29274431	.	-	0	Parent=Os07t0688800-01
Chr07	irgsp1_rep	CDS	29274160	29274238	.	-	1	Parent=Os07t0688800-01
Chr07	irgsp1_rep	CDS	29273715	29273810	.	-	0	Parent=Os07t0688800-01
Chr07	irgsp1_rep	CDS	29273451	29273588	.	-	0	Parent=Os07t0688800-01
Chr07	irgsp1_rep	CDS	29272803	29273018	.	-	0	Parent=Os07t0688800-01
Chr07	irgsp1_rep	CDS	29272535	29272726	.	-	0	Parent=Os07t0688800-01
Chr07	irgsp1_rep	CDS	29272171	29272314	.	-	0	Parent=Os07t0688800-01
Chr07	irgsp1_rep	CDS	29271926	29272084	.	-	0	Parent=Os07t0688800-01
Chr07	irgsp1_rep	three_prime_UTR	29271588	29271925	.	-	.	Parent=Os07t0688800-01
Chr07	irgsp1_rep	mRNA	29289228	29291615	.	-	.	ID=Os07t0689150-00;Name=Os07t0689150-00;Locus_id=Os07g0689150;Note=Similar to BADH-like protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A7LHM3 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: ATP-dependent peptidase activity (GO:0004176),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Peptidase S16%2C Lon C-terminal (IPR008269),Aldehyde dehydrogenase domain (IPR015590),Aldehyde/histidinol dehydrogenase (IPR016161),Aldehyde dehydrogenase%2C N-terminal (IPR016162);TENOR=Os07t0689150-00;KEGG=Os07t0689150-00
Chr07	irgsp1_rep	CDS	29291504	29291615	.	-	0	Parent=Os07t0689150-00
Chr07	irgsp1_rep	CDS	29290655	29290776	.	-	2	Parent=Os07t0689150-00
Chr07	irgsp1_rep	CDS	29290288	29290415	.	-	0	Parent=Os07t0689150-00
Chr07	irgsp1_rep	CDS	29290010	29290103	.	-	1	Parent=Os07t0689150-00
Chr07	irgsp1_rep	CDS	29289228	29289332	.	-	0	Parent=Os07t0689150-00
Chr07	irgsp1_rep	mRNA	29292455	29297790	.	-	.	ID=Os07t0689300-01;Name=Os07t0689300-01;Locus_id=Os07g0689300;Oryzabase Gene Symbol Synonym(s)=OsLonP3%2C LONP3;Oryzabase Gene Name Synonym(s)=Lon protease 3%2C LON PROTEASE 3;Note=Similar to Lon protease homolog%2C mitochondrial.;Transcript_evidence=AK068511 (DDBJ%2C Best hit);ORF_evidence=A2YQ56 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: ATP-dependent peptidase activity (GO:0004176),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: ATP binding (GO:0005524);InterPro=ATPase%2C AAA-type%2C core (IPR003959),Peptidase S16%2C active site (IPR008268),Peptidase S16%2C Lon C-terminal (IPR008269),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=J013153J24;Oryzabase=20041;TENOR=Os07t0689300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	29297789	29297790	.	-	.	Parent=Os07t0689300-01
Chr07	irgsp1_rep	CDS	29297762	29297788	.	-	0	Parent=Os07t0689300-01
Chr07	irgsp1_rep	CDS	29297456	29297569	.	-	0	Parent=Os07t0689300-01
Chr07	irgsp1_rep	CDS	29296620	29296787	.	-	0	Parent=Os07t0689300-01
Chr07	irgsp1_rep	CDS	29295308	29295409	.	-	0	Parent=Os07t0689300-01
Chr07	irgsp1_rep	CDS	29294434	29294733	.	-	0	Parent=Os07t0689300-01
Chr07	irgsp1_rep	CDS	29293319	29293837	.	-	0	Parent=Os07t0689300-01
Chr07	irgsp1_rep	CDS	29292715	29292903	.	-	0	Parent=Os07t0689300-01
Chr07	irgsp1_rep	three_prime_UTR	29292455	29292714	.	-	.	Parent=Os07t0689300-01
Chr07	irgsp1_rep	mRNA	29303641	29309373	.	+	.	ID=Os07t0689400-01;Name=Os07t0689400-01;Locus_id=Os07g0689400;Oryzabase Gene Symbol Synonym(s)=OsPOP17%2C POP17;Oryzabase Gene Name Synonym(s)=Prolyl Oligopeptidase 17%2C PROLYL OLIGOPEPTIDASE 17;Note=Similar to predicted protein.;Transcript_evidence=AK120218 (DDBJ%2C Best hit);ORF_evidence=NP_850473.1 (RefSeq);NIAS_FLcDNA=J013040O21;Oryzabase=20025;Expression=AK120218;TENOR=Os07t0689400-01;KEGG=Os07t0689400-01
Chr07	irgsp1_rep	five_prime_UTR	29303641	29303716	.	+	.	Parent=Os07t0689400-01
Chr07	irgsp1_rep	CDS	29303717	29303927	.	+	0	Parent=Os07t0689400-01
Chr07	irgsp1_rep	CDS	29304190	29304391	.	+	2	Parent=Os07t0689400-01
Chr07	irgsp1_rep	CDS	29304476	29304586	.	+	1	Parent=Os07t0689400-01
Chr07	irgsp1_rep	CDS	29304690	29304750	.	+	1	Parent=Os07t0689400-01
Chr07	irgsp1_rep	three_prime_UTR	29304751	29304931	.	+	.	Parent=Os07t0689400-01
Chr07	irgsp1_rep	three_prime_UTR	29305017	29306739	.	+	.	Parent=Os07t0689400-01
Chr07	irgsp1_rep	three_prime_UTR	29306852	29308041	.	+	.	Parent=Os07t0689400-01
Chr07	irgsp1_rep	three_prime_UTR	29308133	29309373	.	+	.	Parent=Os07t0689400-01
Chr07	irgsp1_rep	mRNA	29323098	29324607	.	+	.	ID=Os07t0689600-01;Name=Os07t0689600-01;Locus_id=Os07g0689600;RAP-DB Gene Symbol Synonym(s)=OsNAS3;RAP-DB Gene Name Synonym(s)=Nicotianamine synthase 3%2C NA synthase 3;CGSNL Gene Symbol=NAS3;CGSNL Gene Name=NICOTIANAMINE SYNTHASE 3;Oryzabase Gene Symbol Synonym(s)=OsNAS3;Oryzabase Gene Name Synonym(s)=rice nicotianamine synthase3%2C NA synthase gene 3%2C Nicotianamine synthase 3%2C S-adenosyl-L-methionine:S-adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3-carboxypropyltransferase 3;Note=Nicotianamine synthase 3%2C Mitigation of excess Fe stress%2C Fe detoxification%2C Transport of iron;Transcript_evidence=AK070656;ORF_evidence=Q0D3F2;GO=Biological Process: nicotianamine biosynthetic process (GO:0030418),Molecular Function: nicotianamine synthase activity (GO:0030410);InterPro=S-adenosyl-L-methionine-dependent methyltransferase (IPR029063),Nicotianamine synthase (IPR004298);NIAS_FLcDNA=J023055E24;Manual Curation=May 27%2C 2020;Literature_PMID=31231401,14617093;Oryzabase=3122;Expression=AK070656;TENOR=Os07t0689600-01;KEGG=Os07t0689600-01 (EC:2.5.1.43)
Chr07	irgsp1_rep	five_prime_UTR	29323098	29323184	.	+	.	Parent=Os07t0689600-01
Chr07	irgsp1_rep	CDS	29323185	29324216	.	+	0	Parent=Os07t0689600-01
Chr07	irgsp1_rep	three_prime_UTR	29324217	29324607	.	+	.	Parent=Os07t0689600-01
Chr07	irgsp1_rep	mRNA	29338795	29341149	.	+	.	ID=Os07t0689800-01;Name=Os07t0689800-01;Locus_id=Os07g0689800;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK071235 (DDBJ%2C Best hit);ORF_evidence=XP_002874939.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: heat shock protein binding (GO:0031072);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J023086P13;Expression=AK071235;TENOR=Os07t0689800-01;KEGG=Os07t0689800-01
Chr07	irgsp1_rep	five_prime_UTR	29338795	29338839	.	+	.	Parent=Os07t0689800-01
Chr07	irgsp1_rep	CDS	29338840	29338893	.	+	0	Parent=Os07t0689800-01
Chr07	irgsp1_rep	CDS	29339029	29340786	.	+	0	Parent=Os07t0689800-01
Chr07	irgsp1_rep	three_prime_UTR	29340787	29341149	.	+	.	Parent=Os07t0689800-01
Chr07	irgsp1_rep	mRNA	29343108	29343652	.	-	.	ID=Os07t0689900-00;Name=Os07t0689900-00;Locus_id=Os07g0689900;Note=Non-protein coding transcript.;Transcript_evidence=CT836162 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os07t0689900-00
Chr07	irgsp1_rep	exon	29343108	29343652	.	-	.	Parent=Os07t0689900-00
Chr07	irgsp1_rep	mRNA	29344726	29348450	.	-	.	ID=Os07t0689950-00;Name=Os07t0689950-00;Locus_id=Os07g0689950;CGSNL Gene Symbol=DLN197;CGSNL Gene Name=DLN REPRESSOR 197;Oryzabase Gene Symbol Synonym(s)=OsDLN197;Oryzabase Gene Name Synonym(s)=DLN repressor 197%2C DLN motif protein 197;Note=BRCT domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001060709.2 (RefSeq);GO=Cellular Component: intracellular (GO:0005622);InterPro=BRCT (IPR001357);Oryzabase=23221;TENOR=Os07t0689950-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	29348369	29348450	.	-	0	Parent=Os07t0689950-00
Chr07	irgsp1_rep	CDS	29347852	29347936	.	-	2	Parent=Os07t0689950-00
Chr07	irgsp1_rep	CDS	29347712	29347756	.	-	1	Parent=Os07t0689950-00
Chr07	irgsp1_rep	CDS	29344726	29347531	.	-	1	Parent=Os07t0689950-00
Chr07	irgsp1_rep	mRNA	29351294	29352069	.	-	.	ID=Os07t0690200-01;Name=Os07t0690200-01;Locus_id=Os07g0690200;Note=Protein of unknown function DUF3511 domain containing protein.;Transcript_evidence=AK108269 (DDBJ%2C Best hit);ORF_evidence=A2YQ62 (UniProt);InterPro=Protein of unknown function DUF3511 (IPR021899);NIAS_FLcDNA=002-141-C01;Expression=AK108269;TENOR=Os07t0690200-01;KEGG=Os07t0690200-01
Chr07	irgsp1_rep	five_prime_UTR	29351916	29352069	.	-	.	Parent=Os07t0690200-01
Chr07	irgsp1_rep	CDS	29351649	29351915	.	-	0	Parent=Os07t0690200-01
Chr07	irgsp1_rep	three_prime_UTR	29351294	29351648	.	-	.	Parent=Os07t0690200-01
Chr07	irgsp1_rep	mRNA	29353073	29357315	.	-	.	ID=Os07t0690300-01;Name=Os07t0690300-01;Locus_id=Os07g0690300;CGSNL Gene Symbol=DLN198;CGSNL Gene Name=DLN REPRESSOR 198;Oryzabase Gene Symbol Synonym(s)=OsRFP%2C OsDLN198;Oryzabase Gene Name Synonym(s)=RING finger protein%2C DLN repressor 198%2C DLN motif protein 198;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK099674 (DDBJ%2C Best hit);ORF_evidence=B9FV00 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907);NIAS_FLcDNA=J013069F21;Oryzabase=21168;Expression=AK099674;TENOR=Os07t0690300-01;KEGG=Os07t0690300-01
Chr07	irgsp1_rep	five_prime_UTR	29357023	29357315	.	-	.	Parent=Os07t0690300-01
Chr07	irgsp1_rep	five_prime_UTR	29356857	29356858	.	-	.	Parent=Os07t0690300-01
Chr07	irgsp1_rep	CDS	29355279	29356856	.	-	0	Parent=Os07t0690300-01
Chr07	irgsp1_rep	three_prime_UTR	29354065	29355278	.	-	.	Parent=Os07t0690300-01
Chr07	irgsp1_rep	three_prime_UTR	29353073	29353449	.	-	.	Parent=Os07t0690300-01
Chr07	irgsp1_rep	mRNA	29353061	29354174	.	-	.	ID=Os07t0690300-02;Name=Os07t0690300-02;Locus_id=Os07g0690300;CGSNL Gene Symbol=DLN198;CGSNL Gene Name=DLN REPRESSOR 198;Oryzabase Gene Symbol Synonym(s)=OsRFP%2C OsDLN198;Oryzabase Gene Name Synonym(s)=RING finger protein%2C DLN repressor 198%2C DLN motif protein 198;Note=Hypothetical conserved gene.;Transcript_evidence=AK062111 (DDBJ%2C Best hit);ORF_evidence=B9FV00 (UniProt);NIAS_FLcDNA=001-045-B09;Oryzabase=21168;Expression=AK062111;TENOR=Os07t0690300-02;KEGG=Os07t0690300-02
Chr07	irgsp1_rep	five_prime_UTR	29354174	29354174	.	-	.	Parent=Os07t0690300-02
Chr07	irgsp1_rep	CDS	29354065	29354173	.	-	0	Parent=Os07t0690300-02
Chr07	irgsp1_rep	CDS	29353217	29353449	.	-	2	Parent=Os07t0690300-02
Chr07	irgsp1_rep	three_prime_UTR	29353061	29353216	.	-	.	Parent=Os07t0690300-02
Chr07	irgsp1_rep	mRNA	29363684	29370420	.	+	.	ID=Os07t0690400-01;Name=Os07t0690400-01;Locus_id=Os07g0690400;Oryzabase Gene Symbol Synonym(s)=OsPP99;Oryzabase Gene Name Synonym(s)=Protein phosphatase 99;Note=Similar to Calmodulin-binding protein phosphatase.;Transcript_evidence=AK068590 (DDBJ%2C Best hit);ORF_evidence=B4F8Y6 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J013152K12;Oryzabase=18648;Expression=AK068590;TENOR=Os07t0690400-01;KEGG=Os07t0690400-01
Chr07	irgsp1_rep	five_prime_UTR	29363684	29363926	.	+	.	Parent=Os07t0690400-01
Chr07	irgsp1_rep	CDS	29363927	29364136	.	+	0	Parent=Os07t0690400-01
Chr07	irgsp1_rep	CDS	29364253	29364424	.	+	0	Parent=Os07t0690400-01
Chr07	irgsp1_rep	CDS	29364502	29364719	.	+	2	Parent=Os07t0690400-01
Chr07	irgsp1_rep	CDS	29364871	29364978	.	+	0	Parent=Os07t0690400-01
Chr07	irgsp1_rep	CDS	29365086	29365211	.	+	0	Parent=Os07t0690400-01
Chr07	irgsp1_rep	CDS	29365330	29365568	.	+	0	Parent=Os07t0690400-01
Chr07	irgsp1_rep	CDS	29369840	29370062	.	+	1	Parent=Os07t0690400-01
Chr07	irgsp1_rep	three_prime_UTR	29370063	29370420	.	+	.	Parent=Os07t0690400-01
Chr07	irgsp1_rep	mRNA	29363768	29370141	.	+	.	ID=Os07t0690400-02;Name=Os07t0690400-02;Locus_id=Os07g0690400;Oryzabase Gene Symbol Synonym(s)=OsPP99;Oryzabase Gene Name Synonym(s)=Protein phosphatase 99;Note=Similar to Calmodulin-binding protein phosphatase.;Transcript_evidence=AK059256 (DDBJ%2C Best hit);ORF_evidence=B4F8Y6 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=001-024-H09;Oryzabase=18648;Expression=AK059256;TENOR=Os07t0690400-02;KEGG=Os07t0690400-02
Chr07	irgsp1_rep	five_prime_UTR	29363768	29363926	.	+	.	Parent=Os07t0690400-02
Chr07	irgsp1_rep	CDS	29363927	29364136	.	+	0	Parent=Os07t0690400-02
Chr07	irgsp1_rep	CDS	29364253	29364424	.	+	0	Parent=Os07t0690400-02
Chr07	irgsp1_rep	CDS	29364502	29364719	.	+	2	Parent=Os07t0690400-02
Chr07	irgsp1_rep	CDS	29364871	29364978	.	+	0	Parent=Os07t0690400-02
Chr07	irgsp1_rep	CDS	29365086	29365211	.	+	0	Parent=Os07t0690400-02
Chr07	irgsp1_rep	CDS	29365330	29365568	.	+	0	Parent=Os07t0690400-02
Chr07	irgsp1_rep	CDS	29369840	29370062	.	+	1	Parent=Os07t0690400-02
Chr07	irgsp1_rep	three_prime_UTR	29370063	29370141	.	+	.	Parent=Os07t0690400-02
Chr07	irgsp1_rep	mRNA	29370536	29371698	.	-	.	ID=Os07t0690600-00;Name=Os07t0690600-00;Locus_id=Os07g0690600;Note=Protein of unknown function DUF1677%2C Oryza sativa domain containing protein.;Transcript_evidence=AK365840 (DDBJ);ORF_evidence=Q8H3Z2 (UniProt);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);TENOR=Os07t0690600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	29370547	29371698	.	-	0	Parent=Os07t0690600-00
Chr07	irgsp1_rep	three_prime_UTR	29370536	29370546	.	-	.	Parent=Os07t0690600-00
Chr07	irgsp1_rep	mRNA	29376921	29379554	.	+	.	ID=Os07t0690800-00;Name=Os07t0690800-00;Locus_id=Os07g0690800;CGSNL Gene Symbol=PCS12;CGSNL Gene Name=PHYTOCHELATIN SYNTHASE 12;Oryzabase Gene Symbol Synonym(s)=OsPCS12;Oryzabase Gene Name Synonym(s)=Phytochelatin synthase 12;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FV02 (UniProt);Oryzabase=23322;TENOR=Os07t0690800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	29376921	29376965	.	+	0	Parent=Os07t0690800-00
Chr07	irgsp1_rep	CDS	29377387	29377467	.	+	0	Parent=Os07t0690800-00
Chr07	irgsp1_rep	CDS	29377546	29377650	.	+	0	Parent=Os07t0690800-00
Chr07	irgsp1_rep	CDS	29378031	29378960	.	+	0	Parent=Os07t0690800-00
Chr07	irgsp1_rep	CDS	29379480	29379554	.	+	0	Parent=Os07t0690800-00
Chr07	irgsp1_rep	mRNA	29382741	29385022	.	-	.	ID=Os07t0690900-01;Name=Os07t0690900-01;Locus_id=Os07g0690900;CGSNL Gene Symbol=BC1L8;CGSNL Gene Name=BRITTLE CULM-LIKE 8;Oryzabase Gene Symbol Synonym(s)=OsBC1L8;Oryzabase Gene Name Synonym(s)=BRITTLE CULM1-like 8;Note=Glycosyl-phosphatidyl inositol-anchored%2C plant domain containing protein.;Transcript_evidence=AK100144 (DDBJ%2C Best hit);ORF_evidence=NP_001105972.1 (RefSeq);InterPro=Glycosyl-phosphatidyl inositol-anchored%2C plant (IPR006918);NIAS_FLcDNA=J023012H04;Oryzabase=22982;Expression=AK100144;TENOR=Os07t0690900-01;KEGG=Os07t0690900-01
Chr07	irgsp1_rep	five_prime_UTR	29384956	29385022	.	-	.	Parent=Os07t0690900-01
Chr07	irgsp1_rep	CDS	29382928	29384955	.	-	0	Parent=Os07t0690900-01
Chr07	irgsp1_rep	three_prime_UTR	29382741	29382927	.	-	.	Parent=Os07t0690900-01
Chr07	irgsp1_rep	mRNA	29388044	29390321	.	+	.	ID=Os07t0691100-01;Name=Os07t0691100-01;Locus_id=Os07g0691100;CGSNL Gene Symbol=PME23;CGSNL Gene Name=PECTIN METHYLESTERASE 23;Oryzabase Gene Symbol Synonym(s)=OsPME23;Oryzabase Gene Name Synonym(s)=pectin methylesterase 23;Note=Similar to Pectin methylesterase 6 (Fragment).;Transcript_evidence=AK071728 (DDBJ%2C Best hit);ORF_evidence=A3BNN5 (UniProt);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectinesterase inhibitor (IPR006501),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),Pectinesterase%2C active site (IPR018040);NIAS_FLcDNA=J023112F11;Oryzabase=13187;Expression=AK071728;TENOR=Os07t0691100-01;KEGG=Os07t0691100-01
Chr07	irgsp1_rep	five_prime_UTR	29388044	29388153	.	+	.	Parent=Os07t0691100-01
Chr07	irgsp1_rep	CDS	29388154	29389352	.	+	0	Parent=Os07t0691100-01
Chr07	irgsp1_rep	CDS	29389439	29389940	.	+	1	Parent=Os07t0691100-01
Chr07	irgsp1_rep	three_prime_UTR	29389941	29390087	.	+	.	Parent=Os07t0691100-01
Chr07	irgsp1_rep	three_prime_UTR	29390162	29390321	.	+	.	Parent=Os07t0691100-01
Chr07	irgsp1_rep	mRNA	29392447	29401811	.	+	.	ID=Os07t0691200-01;Name=Os07t0691200-01;Locus_id=Os07g0691200;Note=Similar to D-alanine--D-alanine ligase B (EC 6.3.2.4) (D-alanylalanine synthetase B) (D-Ala-D-Ala ligase B).;Transcript_evidence=AK101012 (DDBJ%2C Best hit);ORF_evidence=XP_002884699.1 (RefSeq);GO=Biological Process: peptidoglycan biosynthetic process (GO:0009252),Cellular Component: cell wall (GO:0005618),Cellular Component: cytoplasm (GO:0005737),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524),Molecular Function: D-alanine-D-alanine ligase activity (GO:0008716),Molecular Function: ligase activity (GO:0016874),Molecular Function: metal ion binding (GO:0046872);InterPro=D-alanine--D-alanine ligase/VANA/B/C%2C conserved site (IPR000291),D-alanine--D-alanine ligase (IPR005905),D-alanine--D-alanine ligase%2C C-terminal (IPR011095),D-alanine--D-alanine ligase%2C N-terminal (IPR011127),ATP-grasp fold (IPR011761),ATP-grasp fold%2C subdomain 1 (IPR013815),ATP-grasp fold%2C subdomain 2 (IPR013816),Pre-ATP-grasp fold (IPR013817),PreATP-grasp-like fold (IPR016185);NIAS_FLcDNA=J023148P17;Expression=AK101012;TENOR=Os07t0691200-01;KEGG=Os07t0691200-01 (EC:6.3.2.4)
Chr07	irgsp1_rep	five_prime_UTR	29392447	29392711	.	+	.	Parent=Os07t0691200-01
Chr07	irgsp1_rep	CDS	29392712	29393011	.	+	0	Parent=Os07t0691200-01
Chr07	irgsp1_rep	CDS	29393146	29393220	.	+	0	Parent=Os07t0691200-01
Chr07	irgsp1_rep	CDS	29393491	29393534	.	+	0	Parent=Os07t0691200-01
Chr07	irgsp1_rep	CDS	29393625	29393736	.	+	1	Parent=Os07t0691200-01
Chr07	irgsp1_rep	CDS	29394457	29394528	.	+	0	Parent=Os07t0691200-01
Chr07	irgsp1_rep	CDS	29395027	29395089	.	+	0	Parent=Os07t0691200-01
Chr07	irgsp1_rep	CDS	29395535	29395612	.	+	0	Parent=Os07t0691200-01
Chr07	irgsp1_rep	CDS	29395688	29395780	.	+	0	Parent=Os07t0691200-01
Chr07	irgsp1_rep	CDS	29395872	29395991	.	+	0	Parent=Os07t0691200-01
Chr07	irgsp1_rep	CDS	29396340	29396423	.	+	0	Parent=Os07t0691200-01
Chr07	irgsp1_rep	CDS	29396672	29396887	.	+	0	Parent=Os07t0691200-01
Chr07	irgsp1_rep	CDS	29396979	29397026	.	+	0	Parent=Os07t0691200-01
Chr07	irgsp1_rep	CDS	29397305	29397559	.	+	0	Parent=Os07t0691200-01
Chr07	irgsp1_rep	CDS	29397748	29397845	.	+	0	Parent=Os07t0691200-01
Chr07	irgsp1_rep	CDS	29398582	29398826	.	+	1	Parent=Os07t0691200-01
Chr07	irgsp1_rep	CDS	29399342	29399410	.	+	2	Parent=Os07t0691200-01
Chr07	irgsp1_rep	CDS	29399497	29399561	.	+	2	Parent=Os07t0691200-01
Chr07	irgsp1_rep	CDS	29399746	29399915	.	+	0	Parent=Os07t0691200-01
Chr07	irgsp1_rep	CDS	29400012	29400090	.	+	1	Parent=Os07t0691200-01
Chr07	irgsp1_rep	CDS	29400192	29400447	.	+	0	Parent=Os07t0691200-01
Chr07	irgsp1_rep	CDS	29400994	29401039	.	+	2	Parent=Os07t0691200-01
Chr07	irgsp1_rep	CDS	29401180	29401288	.	+	1	Parent=Os07t0691200-01
Chr07	irgsp1_rep	CDS	29401398	29401460	.	+	0	Parent=Os07t0691200-01
Chr07	irgsp1_rep	CDS	29401585	29401665	.	+	0	Parent=Os07t0691200-01
Chr07	irgsp1_rep	three_prime_UTR	29401666	29401811	.	+	.	Parent=Os07t0691200-01
Chr07	irgsp1_rep	mRNA	29392727	29401888	.	+	.	ID=Os07t0691200-02;Name=Os07t0691200-02;Locus_id=Os07g0691200;Note=Similar to D-alanine--D-alanine ligase family.;Transcript_evidence=AK072158 (DDBJ%2C Best hit);ORF_evidence=XP_002884699.1 (RefSeq);GO=Biological Process: peptidoglycan biosynthetic process (GO:0009252),Cellular Component: cell wall (GO:0005618),Cellular Component: cytoplasm (GO:0005737),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524),Molecular Function: D-alanine-D-alanine ligase activity (GO:0008716),Molecular Function: ligase activity (GO:0016874),Molecular Function: metal ion binding (GO:0046872);InterPro=D-alanine--D-alanine ligase/VANA/B/C%2C conserved site (IPR000291),D-alanine--D-alanine ligase (IPR005905),D-alanine--D-alanine ligase%2C C-terminal (IPR011095),D-alanine--D-alanine ligase%2C N-terminal (IPR011127),ATP-grasp fold (IPR011761),ATP-grasp fold%2C subdomain 1 (IPR013815),ATP-grasp fold%2C subdomain 2 (IPR013816),Pre-ATP-grasp fold (IPR013817),PreATP-grasp-like fold (IPR016185);NIAS_FLcDNA=J013131J23;TENOR=Os07t0691200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	29392727	29392900	.	+	.	Parent=Os07t0691200-02
Chr07	irgsp1_rep	CDS	29392901	29393011	.	+	0	Parent=Os07t0691200-02
Chr07	irgsp1_rep	CDS	29393146	29393220	.	+	0	Parent=Os07t0691200-02
Chr07	irgsp1_rep	CDS	29393491	29393534	.	+	0	Parent=Os07t0691200-02
Chr07	irgsp1_rep	CDS	29393625	29393736	.	+	1	Parent=Os07t0691200-02
Chr07	irgsp1_rep	CDS	29394457	29394528	.	+	0	Parent=Os07t0691200-02
Chr07	irgsp1_rep	CDS	29395027	29395089	.	+	0	Parent=Os07t0691200-02
Chr07	irgsp1_rep	CDS	29395535	29395612	.	+	0	Parent=Os07t0691200-02
Chr07	irgsp1_rep	CDS	29395688	29395780	.	+	0	Parent=Os07t0691200-02
Chr07	irgsp1_rep	CDS	29395872	29395991	.	+	0	Parent=Os07t0691200-02
Chr07	irgsp1_rep	CDS	29396340	29396423	.	+	0	Parent=Os07t0691200-02
Chr07	irgsp1_rep	CDS	29396672	29396887	.	+	0	Parent=Os07t0691200-02
Chr07	irgsp1_rep	CDS	29396979	29397026	.	+	0	Parent=Os07t0691200-02
Chr07	irgsp1_rep	CDS	29397305	29397559	.	+	0	Parent=Os07t0691200-02
Chr07	irgsp1_rep	CDS	29397748	29397845	.	+	0	Parent=Os07t0691200-02
Chr07	irgsp1_rep	CDS	29398582	29398826	.	+	1	Parent=Os07t0691200-02
Chr07	irgsp1_rep	CDS	29399342	29399410	.	+	2	Parent=Os07t0691200-02
Chr07	irgsp1_rep	CDS	29399497	29399561	.	+	2	Parent=Os07t0691200-02
Chr07	irgsp1_rep	CDS	29399746	29399915	.	+	0	Parent=Os07t0691200-02
Chr07	irgsp1_rep	CDS	29400012	29400090	.	+	1	Parent=Os07t0691200-02
Chr07	irgsp1_rep	CDS	29400192	29400447	.	+	0	Parent=Os07t0691200-02
Chr07	irgsp1_rep	CDS	29400994	29401039	.	+	2	Parent=Os07t0691200-02
Chr07	irgsp1_rep	CDS	29401180	29401288	.	+	1	Parent=Os07t0691200-02
Chr07	irgsp1_rep	CDS	29401398	29401460	.	+	0	Parent=Os07t0691200-02
Chr07	irgsp1_rep	CDS	29401585	29401665	.	+	0	Parent=Os07t0691200-02
Chr07	irgsp1_rep	three_prime_UTR	29401666	29401888	.	+	.	Parent=Os07t0691200-02
Chr07	irgsp1_rep	mRNA	29392807	29395989	.	+	.	ID=Os07t0691200-03;Name=Os07t0691200-03;Locus_id=Os07g0691200;Note=Similar to predicted protein.;Transcript_evidence=AK068807 (DDBJ%2C Best hit);ORF_evidence=B8B6A3 (UniProt);GO=Biological Process: peptidoglycan biosynthetic process (GO:0009252),Cellular Component: cell wall (GO:0005618),Cellular Component: cytoplasm (GO:0005737),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524),Molecular Function: D-alanine-D-alanine ligase activity (GO:0008716);InterPro=D-alanine--D-alanine ligase (IPR005905),D-alanine--D-alanine ligase%2C N-terminal (IPR011127),Pre-ATP-grasp fold (IPR013817),PreATP-grasp-like fold (IPR016185);NIAS_FLcDNA=J013159G14;Expression=AK068807;TENOR=Os07t0691200-03;KEGG=Os07t0691200-03
Chr07	irgsp1_rep	five_prime_UTR	29392807	29392807	.	+	.	Parent=Os07t0691200-03
Chr07	irgsp1_rep	CDS	29392808	29393011	.	+	0	Parent=Os07t0691200-03
Chr07	irgsp1_rep	CDS	29393146	29393220	.	+	0	Parent=Os07t0691200-03
Chr07	irgsp1_rep	CDS	29393491	29393534	.	+	0	Parent=Os07t0691200-03
Chr07	irgsp1_rep	CDS	29393625	29393736	.	+	1	Parent=Os07t0691200-03
Chr07	irgsp1_rep	CDS	29394457	29394528	.	+	0	Parent=Os07t0691200-03
Chr07	irgsp1_rep	CDS	29395027	29395149	.	+	0	Parent=Os07t0691200-03
Chr07	irgsp1_rep	three_prime_UTR	29395150	29395612	.	+	.	Parent=Os07t0691200-03
Chr07	irgsp1_rep	three_prime_UTR	29395688	29395780	.	+	.	Parent=Os07t0691200-03
Chr07	irgsp1_rep	three_prime_UTR	29395872	29395989	.	+	.	Parent=Os07t0691200-03
Chr07	irgsp1_rep	mRNA	29397344	29401888	.	+	.	ID=Os07t0691200-04;Name=Os07t0691200-04;Locus_id=Os07g0691200;Note=Hypothetical conserved gene.;Transcript_evidence=AK060763 (DDBJ%2C Best hit);ORF_evidence=B8B6A3 (UniProt);GO=Biological Process: peptidoglycan biosynthetic process (GO:0009252),Cellular Component: cell wall (GO:0005618),Cellular Component: cytoplasm (GO:0005737),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524),Molecular Function: D-alanine-D-alanine ligase activity (GO:0008716),Molecular Function: ligase activity (GO:0016874),Molecular Function: metal ion binding (GO:0046872);InterPro=D-alanine--D-alanine ligase/VANA/B/C%2C conserved site (IPR000291),D-alanine--D-alanine ligase (IPR005905),D-alanine--D-alanine ligase%2C C-terminal (IPR011095),D-alanine--D-alanine ligase%2C N-terminal (IPR011127),ATP-grasp fold (IPR011761),ATP-grasp fold%2C subdomain 2 (IPR013816),Pre-ATP-grasp fold (IPR013817),PreATP-grasp-like fold (IPR016185);NIAS_FLcDNA=001-033-A05;Expression=AK060763;TENOR=Os07t0691200-04;KEGG=Os07t0691200-04
Chr07	irgsp1_rep	CDS	29397344	29397559	.	+	0	Parent=Os07t0691200-04
Chr07	irgsp1_rep	CDS	29397748	29397845	.	+	0	Parent=Os07t0691200-04
Chr07	irgsp1_rep	CDS	29398582	29398826	.	+	1	Parent=Os07t0691200-04
Chr07	irgsp1_rep	CDS	29399342	29399410	.	+	2	Parent=Os07t0691200-04
Chr07	irgsp1_rep	CDS	29399497	29399561	.	+	2	Parent=Os07t0691200-04
Chr07	irgsp1_rep	CDS	29399746	29399915	.	+	0	Parent=Os07t0691200-04
Chr07	irgsp1_rep	CDS	29400012	29400090	.	+	1	Parent=Os07t0691200-04
Chr07	irgsp1_rep	CDS	29400192	29400447	.	+	0	Parent=Os07t0691200-04
Chr07	irgsp1_rep	CDS	29400994	29401039	.	+	2	Parent=Os07t0691200-04
Chr07	irgsp1_rep	CDS	29401180	29401288	.	+	1	Parent=Os07t0691200-04
Chr07	irgsp1_rep	CDS	29401398	29401460	.	+	0	Parent=Os07t0691200-04
Chr07	irgsp1_rep	CDS	29401585	29401665	.	+	0	Parent=Os07t0691200-04
Chr07	irgsp1_rep	three_prime_UTR	29401666	29401888	.	+	.	Parent=Os07t0691200-04
Chr07	irgsp1_rep	mRNA	29404417	29405293	.	+	.	ID=Os07t0691300-01;Name=Os07t0691300-01;Locus_id=Os07g0691300;Note=Wound-induced protein%2C Wun1%2C subgroup domain containing protein.;Transcript_evidence=AK069499 (DDBJ%2C Best hit);ORF_evidence=B8B6A4 (UniProt);InterPro=Wound-induced protein%2C Wun1 (IPR009798),Wound-induced protein%2C Wun1%2C subgroup (IPR016533);NIAS_FLcDNA=J023022K22;Expression=AK069499;TENOR=Os07t0691300-01;KEGG=Os07t0691300-01
Chr07	irgsp1_rep	five_prime_UTR	29404417	29404720	.	+	.	Parent=Os07t0691300-01
Chr07	irgsp1_rep	CDS	29404721	29405020	.	+	0	Parent=Os07t0691300-01
Chr07	irgsp1_rep	three_prime_UTR	29405021	29405293	.	+	.	Parent=Os07t0691300-01
Chr07	irgsp1_rep	mRNA	29417888	29419191	.	-	.	ID=Os07t0691600-01;Name=Os07t0691600-01;Locus_id=Os07g0691600;Note=Similar to Alcohol dehydrogenase (Fragment).;Transcript_evidence=AK070356 (DDBJ%2C Best hit);ORF_evidence=Q1PBG6 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023050B21;Expression=AK070356;TENOR=Os07t0691600-01;KEGG=Os07t0691600-01
Chr07	irgsp1_rep	five_prime_UTR	29419120	29419191	.	-	.	Parent=Os07t0691600-01
Chr07	irgsp1_rep	CDS	29418996	29419119	.	-	0	Parent=Os07t0691600-01
Chr07	irgsp1_rep	CDS	29418076	29418911	.	-	2	Parent=Os07t0691600-01
Chr07	irgsp1_rep	three_prime_UTR	29417888	29418075	.	-	.	Parent=Os07t0691600-01
Chr07	irgsp1_rep	mRNA	29431144	29435262	.	+	.	ID=Os07t0691700-01;Name=Os07t0691700-01;Locus_id=Os07g0691700;Oryzabase Gene Symbol Synonym(s)=OsSCAR4%2C SCAR4;Oryzabase Gene Name Synonym(s)=Suppressor of cAMP Receptor-Like Protein 4%2C SCAR-like Protein 4%2C suppressor of cAMP receptor 4;Note=Conserved hypothetical protein.;Transcript_evidence=AK241441 (DDBJ%2C Best hit);ORF_evidence=B8AT53 (UniProt);NIAS_FLcDNA=J065162K07;Oryzabase=19954;TENOR=Os07t0691700-01;KEGG=Os07t0691700-01
Chr07	irgsp1_rep	five_prime_UTR	29431144	29431361	.	+	.	Parent=Os07t0691700-01
Chr07	irgsp1_rep	CDS	29431362	29431456	.	+	0	Parent=Os07t0691700-01
Chr07	irgsp1_rep	CDS	29431571	29431758	.	+	1	Parent=Os07t0691700-01
Chr07	irgsp1_rep	CDS	29431918	29432050	.	+	2	Parent=Os07t0691700-01
Chr07	irgsp1_rep	CDS	29432158	29432293	.	+	1	Parent=Os07t0691700-01
Chr07	irgsp1_rep	CDS	29432574	29432650	.	+	0	Parent=Os07t0691700-01
Chr07	irgsp1_rep	CDS	29432740	29434408	.	+	1	Parent=Os07t0691700-01
Chr07	irgsp1_rep	CDS	29434513	29434596	.	+	0	Parent=Os07t0691700-01
Chr07	irgsp1_rep	CDS	29434698	29434802	.	+	0	Parent=Os07t0691700-01
Chr07	irgsp1_rep	CDS	29434880	29434936	.	+	0	Parent=Os07t0691700-01
Chr07	irgsp1_rep	three_prime_UTR	29434937	29435262	.	+	.	Parent=Os07t0691700-01
Chr07	irgsp1_rep	mRNA	29435909	29440130	.	-	.	ID=Os07t0691800-01;Name=Os07t0691800-01;Locus_id=Os07g0691800;Oryzabase Gene Symbol Synonym(s)=TBPOs-2%2C OsRpt2a%2C Rpt2a;Oryzabase Gene Name Synonym(s)=rice homolog of human 26S protease subunit 4%2C rice homolog of human 26S protease S4%2C 19S regulatory particle ATPase subunit 2a%2C RP triple A-ATPase 2a;Note=Similar to 26S proteasome subunit 4-like protein (26S proteasome subunit AtRPT2a).;Transcript_evidence=AK058311 (DDBJ%2C Best hit),AK099264 (DDBJ%2C Best hit),AK105861 (DDBJ%2C Best hit);ORF_evidence=P46466 (UniProt);NIAS_FLcDNA=001-013-H11,J023018C04,001-204-A02;Oryzabase=15763;TENOR=Os07t0691800-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	29440040	29440130	.	-	.	Parent=Os07t0691800-01
Chr07	irgsp1_rep	CDS	29439551	29440039	.	-	0	Parent=Os07t0691800-01
Chr07	irgsp1_rep	CDS	29437263	29437508	.	-	0	Parent=Os07t0691800-01
Chr07	irgsp1_rep	CDS	29436712	29437098	.	-	0	Parent=Os07t0691800-01
Chr07	irgsp1_rep	CDS	29436479	29436619	.	-	0	Parent=Os07t0691800-01
Chr07	irgsp1_rep	CDS	29436086	29436169	.	-	0	Parent=Os07t0691800-01
Chr07	irgsp1_rep	three_prime_UTR	29435909	29436085	.	-	.	Parent=Os07t0691800-01
Chr07	irgsp1_rep	mRNA	29435879	29437389	.	-	.	ID=Os07t0691800-02;Name=Os07t0691800-02;Locus_id=Os07g0691800;Oryzabase Gene Symbol Synonym(s)=TBPOs-2%2C OsRpt2a%2C Rpt2a;Oryzabase Gene Name Synonym(s)=rice homolog of human 26S protease subunit 4%2C rice homolog of human 26S protease S4%2C 19S regulatory particle ATPase subunit 2a%2C RP triple A-ATPase 2a;Note=Similar to 26S protease regulatory subunit 4 homolog.;Transcript_evidence=AK070759 (DDBJ%2C Best hit);ORF_evidence=P46466 (UniProt);GO=Biological Process: protein catabolic process (GO:0030163),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960),26S proteasome subunit P45 (IPR005937);NIAS_FLcDNA=J023065N19;Oryzabase=15763;Expression=AK070759;TENOR=Os07t0691800-02;KEGG=Os07t0691800-02
Chr07	irgsp1_rep	five_prime_UTR	29437389	29437389	.	-	.	Parent=Os07t0691800-02
Chr07	irgsp1_rep	CDS	29437263	29437388	.	-	0	Parent=Os07t0691800-02
Chr07	irgsp1_rep	CDS	29436712	29437098	.	-	0	Parent=Os07t0691800-02
Chr07	irgsp1_rep	CDS	29436479	29436619	.	-	0	Parent=Os07t0691800-02
Chr07	irgsp1_rep	CDS	29436086	29436169	.	-	0	Parent=Os07t0691800-02
Chr07	irgsp1_rep	three_prime_UTR	29435879	29436085	.	-	.	Parent=Os07t0691800-02
Chr07	irgsp1_rep	mRNA	29435883	29436126	.	-	.	ID=Os07t0691800-03;Name=Os07t0691800-03;Locus_id=Os07g0691800;Oryzabase Gene Symbol Synonym(s)=TBPOs-2%2C OsRpt2a%2C Rpt2a;Oryzabase Gene Name Synonym(s)=rice homolog of human 26S protease subunit 4%2C rice homolog of human 26S protease S4%2C 19S regulatory particle ATPase subunit 2a%2C RP triple A-ATPase 2a;Note=Non-protein coding transcript.;Transcript_evidence=AK058808 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-003-C05;Oryzabase=15763;TENOR=Os07t0691800-03
Chr07	irgsp1_rep	exon	29435883	29436126	.	-	.	Parent=Os07t0691800-03
Chr07	irgsp1_rep	mRNA	29436069	29440059	.	+	.	ID=Os07t0692001-00;Name=Os07t0692001-00;Locus_id=Os07g0692001;Note=Hypothetical protein.;Transcript_evidence=tplb0035i09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0692001-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	29436069	29436162	.	+	.	Parent=Os07t0692001-00
Chr07	irgsp1_rep	five_prime_UTR	29436467	29436599	.	+	.	Parent=Os07t0692001-00
Chr07	irgsp1_rep	five_prime_UTR	29436694	29437086	.	+	.	Parent=Os07t0692001-00
Chr07	irgsp1_rep	five_prime_UTR	29437254	29437506	.	+	.	Parent=Os07t0692001-00
Chr07	irgsp1_rep	five_prime_UTR	29439549	29439655	.	+	.	Parent=Os07t0692001-00
Chr07	irgsp1_rep	CDS	29439656	29440059	.	+	0	Parent=Os07t0692001-00
Chr07	irgsp1_rep	mRNA	29458304	29459301	.	-	.	ID=Os07t0692200-00;Name=Os07t0692200-00;Locus_id=Os07g0692200;Note=Uncharacterised protein family UPF0497%2C trans-membrane plant domain containing protein.;Transcript_evidence=CT836053 (DDBJ%2C Best hit);ORF_evidence=NP_001060720.1 (RefSeq);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);TENOR=Os07t0692200-00;KEGG=Os07t0692200-00
Chr07	irgsp1_rep	five_prime_UTR	29459256	29459301	.	-	.	Parent=Os07t0692200-00
Chr07	irgsp1_rep	CDS	29458860	29459255	.	-	0	Parent=Os07t0692200-00
Chr07	irgsp1_rep	CDS	29458550	29458753	.	-	0	Parent=Os07t0692200-00
Chr07	irgsp1_rep	three_prime_UTR	29458304	29458549	.	-	.	Parent=Os07t0692200-00
Chr07	irgsp1_rep	mRNA	29461048	29461775	.	+	.	ID=Os07t0692300-01;Name=Os07t0692300-01;Locus_id=Os07g0692300;Note=Hypothetical gene.;Transcript_evidence=AK111032 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-174-H10;TENOR=Os07t0692300-01
Chr07	irgsp1_rep	five_prime_UTR	29461048	29461048	.	+	.	Parent=Os07t0692300-01
Chr07	irgsp1_rep	CDS	29461049	29461549	.	+	0	Parent=Os07t0692300-01
Chr07	irgsp1_rep	three_prime_UTR	29461550	29461775	.	+	.	Parent=Os07t0692300-01
Chr07	irgsp1_rep	mRNA	29465339	29467172	.	+	.	ID=Os07t0692401-00;Name=Os07t0692401-00;Locus_id=Os07g0692401;Note=Methyltransferase type 11 domain containing protein.;Transcript_evidence=BT066392 (DDBJ);ORF_evidence=NP_001175347.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Methyltransferase type 11 (IPR013216);TENOR=Os07t0692401-00;KEGG=Os07t0692401-00
Chr07	irgsp1_rep	five_prime_UTR	29465339	29465439	.	+	.	Parent=Os07t0692401-00
Chr07	irgsp1_rep	CDS	29465440	29466894	.	+	0	Parent=Os07t0692401-00
Chr07	irgsp1_rep	three_prime_UTR	29466895	29467172	.	+	.	Parent=Os07t0692401-00
Chr07	irgsp1_rep	mRNA	29470082	29472460	.	+	.	ID=Os07t0692500-01;Name=Os07t0692500-01;Locus_id=Os07g0692500;Note=Conserved hypothetical protein.;Transcript_evidence=AK108769 (DDBJ%2C Best hit);ORF_evidence=Q7XI64 (UniProt);NIAS_FLcDNA=002-150-H04;TENOR=Os07t0692500-01
Chr07	irgsp1_rep	CDS	29470082	29470165	.	+	0	Parent=Os07t0692500-01
Chr07	irgsp1_rep	CDS	29470501	29472027	.	+	0	Parent=Os07t0692500-01
Chr07	irgsp1_rep	CDS	29472364	29472460	.	+	0	Parent=Os07t0692500-01
Chr07	irgsp1_rep	mRNA	29473884	29475487	.	+	.	ID=Os07t0692600-01;Name=Os07t0692600-01;Locus_id=Os07g0692600;Note=SNF2-related domain containing protein.;Transcript_evidence=AK107344 (DDBJ%2C Best hit);ORF_evidence=Q7XI63 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524);InterPro=SNF2-related (IPR000330),Helicase%2C C-terminal (IPR001650),DEAD-like helicase (IPR014001);NIAS_FLcDNA=002-126-G07;Expression=AK107344;TENOR=Os07t0692600-01;KEGG=Os07t0692600-01
Chr07	irgsp1_rep	five_prime_UTR	29473884	29473884	.	+	.	Parent=Os07t0692600-01
Chr07	irgsp1_rep	CDS	29473885	29475312	.	+	0	Parent=Os07t0692600-01
Chr07	irgsp1_rep	three_prime_UTR	29475313	29475487	.	+	.	Parent=Os07t0692600-01
Chr07	irgsp1_rep	mRNA	29476238	29478532	.	-	.	ID=Os07t0692800-00;Name=Os07t0692800-00;Locus_id=Os07g0692800;Note=Similar to Eukaryotic translation initiation factor 2 subunit 1 (Eukaryotic translation initiation factor 2 alpha subunit) (eIF-2-alpha) (EIF- 2alpha) (EIF-2A) (Fragment).;Transcript_evidence=ab initio prediction;ORF_evidence=Q2WEA7 (UniProt);GO=Cellular Component: eukaryotic translation initiation factor 2 complex (GO:0005850),Molecular Function: RNA binding (GO:0003723),Molecular Function: translation initiation factor activity (GO:0003743);InterPro=Ribosomal protein S1%2C RNA-binding domain (IPR003029),Translation initiation factor 2%2C alpha subunit (IPR011488),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),RNA-binding domain%2C S1 (IPR022967),Translation initiation factor 2%2C alpha subunit%2C middle domain (IPR024054),Translation initiation factor 2%2C alpha subunit%2C C-terminal (IPR024055);TENOR=Os07t0692800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	29478014	29478532	.	-	0	Parent=Os07t0692800-00
Chr07	irgsp1_rep	CDS	29477568	29477714	.	-	0	Parent=Os07t0692800-00
Chr07	irgsp1_rep	CDS	29477389	29477493	.	-	0	Parent=Os07t0692800-00
Chr07	irgsp1_rep	CDS	29476681	29476779	.	-	0	Parent=Os07t0692800-00
Chr07	irgsp1_rep	CDS	29476238	29476384	.	-	0	Parent=Os07t0692800-00
Chr07	irgsp1_rep	mRNA	29478758	29483599	.	+	.	ID=Os07t0692900-01;Name=Os07t0692900-01;Locus_id=Os07g0692900;Note=Similar to Ubiquitin-activating enzyme E1.;Transcript_evidence=AK074007 (DDBJ%2C Best hit);ORF_evidence=B8B6A7 (UniProt);GO=Biological Process: protein modification process (GO:0006464),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524),Molecular Function: small protein activating enzyme activity (GO:0008641);InterPro=Ubiquitin/SUMO-activating enzyme E1 (IPR000011),Ubiquitin-activating enzyme repeat (IPR000127),UBA/THIF-type NAD/FAD binding fold (IPR000594),Molybdenum cofactor biosynthesis%2C MoeB (IPR009036),NAD(P)-binding domain (IPR016040),Ubiquitin-activating enzyme%2C E1%2C active site (IPR018074),Ubiquitin-activating enzyme%2C E1 (IPR018075),Ubiquitin-activating enzyme e1%2C C-terminal (IPR018965),Ubiquitin-activating enzyme (IPR019572),Ubiquitin-like 1 activating enzyme%2C catalytic cysteine domain (IPR023280);NIAS_FLcDNA=J033076H04;TENOR=Os07t0692900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	29478758	29478759	.	+	.	Parent=Os07t0692900-01
Chr07	irgsp1_rep	CDS	29478760	29478965	.	+	0	Parent=Os07t0692900-01
Chr07	irgsp1_rep	CDS	29479090	29479328	.	+	1	Parent=Os07t0692900-01
Chr07	irgsp1_rep	CDS	29479596	29479813	.	+	2	Parent=Os07t0692900-01
Chr07	irgsp1_rep	CDS	29479915	29480709	.	+	0	Parent=Os07t0692900-01
Chr07	irgsp1_rep	CDS	29480784	29481652	.	+	0	Parent=Os07t0692900-01
Chr07	irgsp1_rep	CDS	29481895	29482327	.	+	1	Parent=Os07t0692900-01
Chr07	irgsp1_rep	CDS	29482841	29483437	.	+	0	Parent=Os07t0692900-01
Chr07	irgsp1_rep	three_prime_UTR	29483438	29483599	.	+	.	Parent=Os07t0692900-01
Chr07	irgsp1_rep	mRNA	29479183	29483437	.	-	.	ID=Os07t0692950-00;Name=Os07t0692950-00;Locus_id=Os07g0692950;Note=Hypothetical protein.;Transcript_evidence=tplb0053b11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os07t0692950-00
Chr07	irgsp1_rep	five_prime_UTR	29482856	29483437	.	-	.	Parent=Os07t0692950-00
Chr07	irgsp1_rep	five_prime_UTR	29481905	29482350	.	-	.	Parent=Os07t0692950-00
Chr07	irgsp1_rep	five_prime_UTR	29481269	29481660	.	-	.	Parent=Os07t0692950-00
Chr07	irgsp1_rep	CDS	29480897	29481268	.	-	0	Parent=Os07t0692950-00
Chr07	irgsp1_rep	three_prime_UTR	29480770	29480896	.	-	.	Parent=Os07t0692950-00
Chr07	irgsp1_rep	three_prime_UTR	29479929	29480698	.	-	.	Parent=Os07t0692950-00
Chr07	irgsp1_rep	three_prime_UTR	29479604	29479823	.	-	.	Parent=Os07t0692950-00
Chr07	irgsp1_rep	three_prime_UTR	29479183	29479334	.	-	.	Parent=Os07t0692950-00
Chr07	irgsp1_rep	mRNA	29484521	29487346	.	+	.	ID=Os07t0693000-01;Name=Os07t0693000-01;Locus_id=Os07g0693000;CGSNL Gene Symbol=RLCK242;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 242;Oryzabase Gene Symbol Synonym(s)=OsRLCK242;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 242;Note=Similar to Ser-thr protein kinase (Fragment).;Transcript_evidence=AK069112 (DDBJ%2C Best hit);ORF_evidence=B6SVW1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J023008B11;Oryzabase=18934;Expression=AK069112;TENOR=Os07t0693000-01;KEGG=Os07t0693000-01
Chr07	irgsp1_rep	five_prime_UTR	29484521	29484683	.	+	.	Parent=Os07t0693000-01
Chr07	irgsp1_rep	CDS	29484684	29484771	.	+	0	Parent=Os07t0693000-01
Chr07	irgsp1_rep	CDS	29484868	29484907	.	+	2	Parent=Os07t0693000-01
Chr07	irgsp1_rep	CDS	29485198	29485658	.	+	1	Parent=Os07t0693000-01
Chr07	irgsp1_rep	CDS	29485751	29485941	.	+	2	Parent=Os07t0693000-01
Chr07	irgsp1_rep	CDS	29486081	29486213	.	+	0	Parent=Os07t0693000-01
Chr07	irgsp1_rep	CDS	29486417	29487006	.	+	2	Parent=Os07t0693000-01
Chr07	irgsp1_rep	three_prime_UTR	29487007	29487346	.	+	.	Parent=Os07t0693000-01
Chr07	irgsp1_rep	mRNA	29490011	29491979	.	+	.	ID=Os07t0693100-01;Name=Os07t0693100-01;Locus_id=Os07g0693100;CGSNL Gene Symbol=PDC3;CGSNL Gene Name=PYRUVATE DECARBOXYLASE 3;Oryzabase Gene Symbol Synonym(s)=pdc3*%2C pdc3%2C OsPDC3%2C OsSTA202;Oryzabase Gene Name Synonym(s)=pyruvate decarboxylase-3%2C pyruvate decarboxylase 3%2C Pyruvate decarboxylase isozyme 3;Note=Similar to Pyruvate decarboxylase isozyme 3 (EC 4.1.1.1) (PDC).;Transcript_evidence=AK100433 (DDBJ%2C Best hit);ORF_evidence=Q0D3D2 (UniProt);GO=Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: carboxy-lyase activity (GO:0016831),Molecular Function: thiamine pyrophosphate binding (GO:0030976);InterPro=Thiamine pyrophosphate enzyme%2C C-terminal TPP-binding (IPR011766),Thiamine pyrophosphate enzyme%2C central domain (IPR012000),Thiamine pyrophosphate enzyme%2C N-terminal TPP-binding domain (IPR012001),Pyruvate decarboxylase/indolepyruvate decarboxylase (IPR012110);NIAS_FLcDNA=J023088I11;Oryzabase=2056;Expression=AK100433;TENOR=Os07t0693100-01;KEGG=Os07t0693100-01 (EC:4.1.1.1)
Chr07	irgsp1_rep	five_prime_UTR	29490011	29490054	.	+	.	Parent=Os07t0693100-01
Chr07	irgsp1_rep	CDS	29490055	29491818	.	+	0	Parent=Os07t0693100-01
Chr07	irgsp1_rep	three_prime_UTR	29491819	29491979	.	+	.	Parent=Os07t0693100-01
Chr07	irgsp1_rep	mRNA	29490014	29492171	.	+	.	ID=Os07t0693100-02;Name=Os07t0693100-02;Locus_id=Os07g0693100;CGSNL Gene Symbol=PDC3;CGSNL Gene Name=PYRUVATE DECARBOXYLASE 3;Oryzabase Gene Symbol Synonym(s)=pdc3*%2C pdc3%2C OsPDC3%2C OsSTA202;Oryzabase Gene Name Synonym(s)=pyruvate decarboxylase-3%2C pyruvate decarboxylase 3%2C Pyruvate decarboxylase isozyme 3;Note=Similar to cDNA clone:J023088I11%2C full insert sequence.;Transcript_evidence=AK071795 (DDBJ%2C Best hit);ORF_evidence=B7EQF7 (UniProt);NIAS_FLcDNA=J023113B12;Oryzabase=2056;Expression=AK071795;TENOR=Os07t0693100-02;KEGG=Os07t0693100-02 (EC:4.1.1.1)
Chr07	irgsp1_rep	five_prime_UTR	29490014	29490054	.	+	.	Parent=Os07t0693100-02
Chr07	irgsp1_rep	CDS	29490055	29490222	.	+	0	Parent=Os07t0693100-02
Chr07	irgsp1_rep	CDS	29490648	29491895	.	+	0	Parent=Os07t0693100-02
Chr07	irgsp1_rep	three_prime_UTR	29491896	29492171	.	+	.	Parent=Os07t0693100-02
Chr07	irgsp1_rep	mRNA	29496090	29504033	.	+	.	ID=Os07t0693400-00;Name=Os07t0693400-00;Locus_id=Os07g0693400;Note=Importin-beta%2C N-terminal domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FV17 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Molecular Function: binding (GO:0005488),Molecular Function: protein transporter activity (GO:0008565);InterPro=Importin-beta%2C N-terminal (IPR001494),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);TENOR=Os07t0693400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	CDS	29496090	29496230	.	+	0	Parent=Os07t0693400-00
Chr07	irgsp1_rep	CDS	29496356	29496412	.	+	0	Parent=Os07t0693400-00
Chr07	irgsp1_rep	CDS	29496972	29497033	.	+	0	Parent=Os07t0693400-00
Chr07	irgsp1_rep	CDS	29497118	29497259	.	+	1	Parent=Os07t0693400-00
Chr07	irgsp1_rep	CDS	29498637	29498826	.	+	0	Parent=Os07t0693400-00
Chr07	irgsp1_rep	CDS	29499219	29499394	.	+	2	Parent=Os07t0693400-00
Chr07	irgsp1_rep	CDS	29499481	29499641	.	+	0	Parent=Os07t0693400-00
Chr07	irgsp1_rep	CDS	29499898	29499997	.	+	1	Parent=Os07t0693400-00
Chr07	irgsp1_rep	CDS	29500100	29500174	.	+	0	Parent=Os07t0693400-00
Chr07	irgsp1_rep	CDS	29500499	29500591	.	+	0	Parent=Os07t0693400-00
Chr07	irgsp1_rep	CDS	29501053	29501235	.	+	0	Parent=Os07t0693400-00
Chr07	irgsp1_rep	CDS	29501316	29501420	.	+	0	Parent=Os07t0693400-00
Chr07	irgsp1_rep	CDS	29502874	29503095	.	+	0	Parent=Os07t0693400-00
Chr07	irgsp1_rep	CDS	29503353	29503459	.	+	0	Parent=Os07t0693400-00
Chr07	irgsp1_rep	CDS	29503549	29503605	.	+	1	Parent=Os07t0693400-00
Chr07	irgsp1_rep	CDS	29503710	29503791	.	+	1	Parent=Os07t0693400-00
Chr07	irgsp1_rep	CDS	29503869	29504033	.	+	0	Parent=Os07t0693400-00
Chr07	irgsp1_rep	mRNA	29504279	29504701	.	+	.	ID=Os07t0693450-01;Name=Os07t0693450-01;Locus_id=Os07g0693450;Note=Non-protein coding transcript.;Transcript_evidence=AK242492 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080307D03;TENOR=Os07t0693450-01
Chr07	irgsp1_rep	exon	29504279	29504701	.	+	.	Parent=Os07t0693450-01
Chr07	irgsp1_rep	mRNA	29505383	29512073	.	+	.	ID=Os07t0693500-01;Name=Os07t0693500-01;Locus_id=Os07g0693500;Note=Similar to AMP deaminase 2 (EC 3.5.4.6) (AMP deaminase isoform L). Splice isoform Ex1A-3.;Transcript_evidence=AK102007 (DDBJ%2C Best hit),AK064333 (DDBJ%2C Best hit);ORF_evidence=NP_850294.1 (RefSeq);GO=Biological Process: purine ribonucleoside monophosphate biosynthetic process (GO:0009168),Molecular Function: AMP deaminase activity (GO:0003876),Molecular Function: deaminase activity (GO:0019239);InterPro=Adenosine/AMP deaminase (IPR001365),AMP deaminase (IPR006329),Adenosine/AMP deaminase active site (IPR006650);NIAS_FLcDNA=J033079N23,002-107-G05;Expression=AK102007;TENOR=Os07t0693500-01;KEGG=Os07t0693500-01 (EC:3.5.4.6)
Chr07	irgsp1_rep	five_prime_UTR	29505383	29505479	.	+	.	Parent=Os07t0693500-01
Chr07	irgsp1_rep	CDS	29505480	29505744	.	+	0	Parent=Os07t0693500-01
Chr07	irgsp1_rep	CDS	29506243	29506427	.	+	2	Parent=Os07t0693500-01
Chr07	irgsp1_rep	CDS	29507082	29507271	.	+	0	Parent=Os07t0693500-01
Chr07	irgsp1_rep	CDS	29507568	29507746	.	+	2	Parent=Os07t0693500-01
Chr07	irgsp1_rep	CDS	29507841	29507892	.	+	0	Parent=Os07t0693500-01
Chr07	irgsp1_rep	CDS	29508004	29508131	.	+	2	Parent=Os07t0693500-01
Chr07	irgsp1_rep	CDS	29508498	29508677	.	+	0	Parent=Os07t0693500-01
Chr07	irgsp1_rep	CDS	29508787	29508854	.	+	0	Parent=Os07t0693500-01
Chr07	irgsp1_rep	CDS	29508942	29509084	.	+	1	Parent=Os07t0693500-01
Chr07	irgsp1_rep	CDS	29509260	29509321	.	+	2	Parent=Os07t0693500-01
Chr07	irgsp1_rep	CDS	29509452	29509565	.	+	0	Parent=Os07t0693500-01
Chr07	irgsp1_rep	CDS	29509758	29509898	.	+	0	Parent=Os07t0693500-01
Chr07	irgsp1_rep	CDS	29510258	29510410	.	+	0	Parent=Os07t0693500-01
Chr07	irgsp1_rep	CDS	29510551	29510604	.	+	0	Parent=Os07t0693500-01
Chr07	irgsp1_rep	CDS	29510680	29510790	.	+	0	Parent=Os07t0693500-01
Chr07	irgsp1_rep	CDS	29510917	29511090	.	+	0	Parent=Os07t0693500-01
Chr07	irgsp1_rep	CDS	29511178	29511258	.	+	0	Parent=Os07t0693500-01
Chr07	irgsp1_rep	CDS	29511366	29511464	.	+	0	Parent=Os07t0693500-01
Chr07	irgsp1_rep	CDS	29511567	29511635	.	+	0	Parent=Os07t0693500-01
Chr07	irgsp1_rep	three_prime_UTR	29511636	29512073	.	+	.	Parent=Os07t0693500-01
Chr07	irgsp1_rep	mRNA	29511651	29513201	.	+	.	ID=Os07t0693500-02;Name=Os07t0693500-02;Locus_id=Os07g0693500;Note=Hypothetical gene.;Transcript_evidence=AK108401 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-142-G04;Expression=AK108401;TENOR=Os07t0693500-02;KEGG=Os07t0693500-02
Chr07	irgsp1_rep	five_prime_UTR	29511651	29511727	.	+	.	Parent=Os07t0693500-02
Chr07	irgsp1_rep	five_prime_UTR	29512395	29512436	.	+	.	Parent=Os07t0693500-02
Chr07	irgsp1_rep	CDS	29512437	29512754	.	+	0	Parent=Os07t0693500-02
Chr07	irgsp1_rep	three_prime_UTR	29512755	29513201	.	+	.	Parent=Os07t0693500-02
Chr07	irgsp1_rep	mRNA	29512230	29516331	.	-	.	ID=Os07t0693600-01;Name=Os07t0693600-01;Locus_id=Os07g0693600;CGSNL Gene Symbol=XOAT7;CGSNL Gene Name=XYLAN O-ACETYLTRANSFERASE 7;Oryzabase Gene Symbol Synonym(s)=OsTBL14%2C TBL14%2C OsXOAT7;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 14%2C xylan O-acetyltransferase 7;Note=Protein of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=AK119589 (DDBJ%2C Best hit);ORF_evidence=NP_191158.1 (RefSeq);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=002-117-D01;Oryzabase=21469;Expression=AK119589;TENOR=Os07t0693600-01;KEGG=Os07t0693600-01
Chr07	irgsp1_rep	five_prime_UTR	29516331	29516331	.	-	.	Parent=Os07t0693600-01
Chr07	irgsp1_rep	CDS	29515251	29516330	.	-	0	Parent=Os07t0693600-01
Chr07	irgsp1_rep	CDS	29514952	29515151	.	-	0	Parent=Os07t0693600-01
Chr07	irgsp1_rep	CDS	29514685	29514861	.	-	1	Parent=Os07t0693600-01
Chr07	irgsp1_rep	CDS	29512467	29512827	.	-	1	Parent=Os07t0693600-01
Chr07	irgsp1_rep	three_prime_UTR	29512230	29512466	.	-	.	Parent=Os07t0693600-01
Chr07	irgsp1_rep	mRNA	29522442	29530602	.	+	.	ID=Os07t0693700-01;Name=Os07t0693700-01;Locus_id=Os07g0693700;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK111591 (DDBJ%2C Best hit);ORF_evidence=B8B6B1 (UniProt);GO=Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: integral to membrane (GO:0016021),Molecular Function: protein binding (GO:0005515);InterPro=Synaptobrevin (IPR001388),WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943);NIAS_FLcDNA=J013089I15;Expression=AK111591;TENOR=Os07t0693700-01;KEGG=Os07t0693700-01
Chr07	irgsp1_rep	five_prime_UTR	29522442	29522496	.	+	.	Parent=Os07t0693700-01
Chr07	irgsp1_rep	CDS	29522497	29522529	.	+	0	Parent=Os07t0693700-01
Chr07	irgsp1_rep	CDS	29522635	29522762	.	+	0	Parent=Os07t0693700-01
Chr07	irgsp1_rep	CDS	29522927	29523011	.	+	1	Parent=Os07t0693700-01
Chr07	irgsp1_rep	CDS	29523349	29523402	.	+	0	Parent=Os07t0693700-01
Chr07	irgsp1_rep	CDS	29523650	29523741	.	+	0	Parent=Os07t0693700-01
Chr07	irgsp1_rep	CDS	29523858	29523961	.	+	1	Parent=Os07t0693700-01
Chr07	irgsp1_rep	CDS	29524389	29524464	.	+	2	Parent=Os07t0693700-01
Chr07	irgsp1_rep	CDS	29524809	29525256	.	+	1	Parent=Os07t0693700-01
Chr07	irgsp1_rep	CDS	29525452	29525787	.	+	0	Parent=Os07t0693700-01
Chr07	irgsp1_rep	CDS	29525880	29526083	.	+	0	Parent=Os07t0693700-01
Chr07	irgsp1_rep	CDS	29526173	29526271	.	+	0	Parent=Os07t0693700-01
Chr07	irgsp1_rep	CDS	29526367	29526439	.	+	0	Parent=Os07t0693700-01
Chr07	irgsp1_rep	CDS	29526951	29527078	.	+	2	Parent=Os07t0693700-01
Chr07	irgsp1_rep	CDS	29527192	29527477	.	+	0	Parent=Os07t0693700-01
Chr07	irgsp1_rep	CDS	29527567	29527793	.	+	2	Parent=Os07t0693700-01
Chr07	irgsp1_rep	CDS	29527874	29528001	.	+	0	Parent=Os07t0693700-01
Chr07	irgsp1_rep	CDS	29528631	29528745	.	+	1	Parent=Os07t0693700-01
Chr07	irgsp1_rep	CDS	29529181	29529236	.	+	0	Parent=Os07t0693700-01
Chr07	irgsp1_rep	CDS	29529373	29529466	.	+	1	Parent=Os07t0693700-01
Chr07	irgsp1_rep	CDS	29529544	29529730	.	+	0	Parent=Os07t0693700-01
Chr07	irgsp1_rep	CDS	29529807	29529887	.	+	2	Parent=Os07t0693700-01
Chr07	irgsp1_rep	CDS	29529962	29530062	.	+	2	Parent=Os07t0693700-01
Chr07	irgsp1_rep	CDS	29530145	29530207	.	+	0	Parent=Os07t0693700-01
Chr07	irgsp1_rep	CDS	29530378	29530485	.	+	0	Parent=Os07t0693700-01
Chr07	irgsp1_rep	three_prime_UTR	29530486	29530602	.	+	.	Parent=Os07t0693700-01
Chr07	irgsp1_rep	mRNA	29531284	29534119	.	+	.	ID=Os07t0693800-01;Name=Os07t0693800-01;Locus_id=Os07g0693800;RAP-DB Gene Symbol Synonym(s)=FAD8%2C OsFAD8%2C Osfad8;RAP-DB Gene Name Synonym(s)=OMEGA-3 FATTY ACID DESATURASE 8%2C w-3 fatty acid desaturase-8%2C chloroplast omega-3 fatty acid desaturase 8;CGSNL Gene Symbol=FAD8;CGSNL Gene Name=OMEGA-3 FATTY ACID DESATURASE 8;Oryzabase Gene Symbol Synonym(s)=OsFAD8%2C Osfad8;Oryzabase Gene Name Synonym(s)=w-3 fatty acid desaturase-8%2C chloroplast omega-3 fatty acid desaturase 8;Note=Omega-3 fatty acid desaturase%2C Acclimation to low-temperature stress%2C Defense response;Transcript_evidence=AK061531,AK098930;ORF_evidence=Q84NP3;GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water (GO:0016717);InterPro=Fatty acid desaturase%2C N-terminal (IPR021863),Fatty acid desaturase domain (IPR005804);NIAS_FLcDNA=006-310-E06, J013025C20;Manual Curation=November 16%2C 2016;Literature_PMID=27835850,17716996,16406238;Oryzabase=7282;TENOR=Os07t0693800-01
Chr07	irgsp1_rep	five_prime_UTR	29531284	29531325	.	+	.	Parent=Os07t0693800-01
Chr07	irgsp1_rep	CDS	29531326	29531747	.	+	0	Parent=Os07t0693800-01
Chr07	irgsp1_rep	CDS	29531835	29531991	.	+	1	Parent=Os07t0693800-01
Chr07	irgsp1_rep	CDS	29532096	29532188	.	+	0	Parent=Os07t0693800-01
Chr07	irgsp1_rep	CDS	29532331	29532516	.	+	0	Parent=Os07t0693800-01
Chr07	irgsp1_rep	CDS	29532685	29532765	.	+	0	Parent=Os07t0693800-01
Chr07	irgsp1_rep	CDS	29533366	29533503	.	+	0	Parent=Os07t0693800-01
Chr07	irgsp1_rep	CDS	29533622	29533786	.	+	0	Parent=Os07t0693800-01
Chr07	irgsp1_rep	three_prime_UTR	29533787	29534119	.	+	.	Parent=Os07t0693800-01
Chr07	irgsp1_rep	mRNA	29531289	29534094	.	+	.	ID=Os07t0693800-02;Name=Os07t0693800-02;Locus_id=Os07g0693800;CGSNL Gene Symbol=FAD8;CGSNL Gene Name=OMEGA-3 FATTY ACID DESATURASE 8;Oryzabase Gene Symbol Synonym(s)=OsFAD8%2C Osfad8;Oryzabase Gene Name Synonym(s)=w-3 fatty acid desaturase-8%2C chloroplast omega-3 fatty acid desaturase 8;Note=Similar to Plastid omega-3 fatty acid desaturase (Fragment).;Transcript_evidence=AK062022 (DDBJ%2C Best hit);ORF_evidence=O23802 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water (GO:0016717);InterPro=Fatty acid desaturase%2C type 1 (IPR005804),Protein of unknown function DUF3474 (IPR021863);NIAS_FLcDNA=001-043-F12;Oryzabase=7282;Expression=AK062022;TENOR=Os07t0693800-02;KEGG=Os07t0693800-02 (EC:1.14.19.-)
Chr07	irgsp1_rep	five_prime_UTR	29531289	29531325	.	+	.	Parent=Os07t0693800-02
Chr07	irgsp1_rep	CDS	29531326	29531747	.	+	0	Parent=Os07t0693800-02
Chr07	irgsp1_rep	CDS	29531835	29531991	.	+	1	Parent=Os07t0693800-02
Chr07	irgsp1_rep	CDS	29532096	29532188	.	+	0	Parent=Os07t0693800-02
Chr07	irgsp1_rep	CDS	29532331	29532516	.	+	0	Parent=Os07t0693800-02
Chr07	irgsp1_rep	CDS	29532685	29532765	.	+	0	Parent=Os07t0693800-02
Chr07	irgsp1_rep	CDS	29533349	29533393	.	+	0	Parent=Os07t0693800-02
Chr07	irgsp1_rep	three_prime_UTR	29533394	29533503	.	+	.	Parent=Os07t0693800-02
Chr07	irgsp1_rep	three_prime_UTR	29533622	29534094	.	+	.	Parent=Os07t0693800-02
Chr07	irgsp1_rep	mRNA	29534469	29545694	.	+	.	ID=Os07t0693900-01;Name=Os07t0693900-01;Locus_id=Os07g0693900;Note=HEAT domain containing protein.;Transcript_evidence=AK065493 (DDBJ%2C Best hit);ORF_evidence=B8B6B3 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Protein of unknown function DUF3453 (IPR021850),Symplekin tight junction protein C-terminal (IPR022075);NIAS_FLcDNA=J013025M10;Expression=AK065493;TENOR=Os07t0693900-01;KEGG=Os07t0693900-01
Chr07	irgsp1_rep	five_prime_UTR	29534469	29534564	.	+	.	Parent=Os07t0693900-01
Chr07	irgsp1_rep	CDS	29534565	29534743	.	+	0	Parent=Os07t0693900-01
Chr07	irgsp1_rep	CDS	29535104	29535263	.	+	1	Parent=Os07t0693900-01
Chr07	irgsp1_rep	CDS	29535345	29535440	.	+	0	Parent=Os07t0693900-01
Chr07	irgsp1_rep	CDS	29535526	29535640	.	+	0	Parent=Os07t0693900-01
Chr07	irgsp1_rep	CDS	29535753	29535915	.	+	2	Parent=Os07t0693900-01
Chr07	irgsp1_rep	CDS	29536114	29536285	.	+	1	Parent=Os07t0693900-01
Chr07	irgsp1_rep	CDS	29537502	29537591	.	+	0	Parent=Os07t0693900-01
Chr07	irgsp1_rep	CDS	29537715	29538176	.	+	0	Parent=Os07t0693900-01
Chr07	irgsp1_rep	CDS	29538253	29538846	.	+	0	Parent=Os07t0693900-01
Chr07	irgsp1_rep	CDS	29539064	29539132	.	+	0	Parent=Os07t0693900-01
Chr07	irgsp1_rep	CDS	29539811	29539927	.	+	0	Parent=Os07t0693900-01
Chr07	irgsp1_rep	CDS	29540010	29540255	.	+	0	Parent=Os07t0693900-01
Chr07	irgsp1_rep	CDS	29540724	29540771	.	+	0	Parent=Os07t0693900-01
Chr07	irgsp1_rep	CDS	29540855	29540995	.	+	0	Parent=Os07t0693900-01
Chr07	irgsp1_rep	CDS	29541326	29541406	.	+	0	Parent=Os07t0693900-01
Chr07	irgsp1_rep	CDS	29541489	29541551	.	+	0	Parent=Os07t0693900-01
Chr07	irgsp1_rep	CDS	29541637	29541744	.	+	0	Parent=Os07t0693900-01
Chr07	irgsp1_rep	CDS	29541881	29541961	.	+	0	Parent=Os07t0693900-01
Chr07	irgsp1_rep	CDS	29542052	29542099	.	+	0	Parent=Os07t0693900-01
Chr07	irgsp1_rep	CDS	29542557	29542631	.	+	0	Parent=Os07t0693900-01
Chr07	irgsp1_rep	CDS	29543551	29543646	.	+	0	Parent=Os07t0693900-01
Chr07	irgsp1_rep	CDS	29543734	29543814	.	+	0	Parent=Os07t0693900-01
Chr07	irgsp1_rep	CDS	29543909	29543980	.	+	0	Parent=Os07t0693900-01
Chr07	irgsp1_rep	CDS	29544567	29544611	.	+	0	Parent=Os07t0693900-01
Chr07	irgsp1_rep	CDS	29544697	29544780	.	+	0	Parent=Os07t0693900-01
Chr07	irgsp1_rep	CDS	29544957	29545060	.	+	0	Parent=Os07t0693900-01
Chr07	irgsp1_rep	CDS	29545159	29545306	.	+	1	Parent=Os07t0693900-01
Chr07	irgsp1_rep	three_prime_UTR	29545307	29545324	.	+	.	Parent=Os07t0693900-01
Chr07	irgsp1_rep	three_prime_UTR	29545435	29545694	.	+	.	Parent=Os07t0693900-01
Chr07	irgsp1_rep	mRNA	29545898	29548978	.	-	.	ID=Os07t0694000-01;Name=Os07t0694000-01;Locus_id=Os07g0694000;RAP-DB Gene Symbol Synonym(s)=OsPI-PLC1%2C PI-PLC1%2C OsPLC1;RAP-DB Gene Name Synonym(s)=phosphoinositide-specific phospholipase C1;Oryzabase Gene Symbol Synonym(s)=OsPI-PLC1%2C PI-PLC1%2C OsPLC1%2C PLC1;Oryzabase Gene Name Synonym(s)=phosphoinositide-specific phospholipase C1%2C phospholipase C1;Note=Phosphoinositide phospholipase C%2C Salt tolerance;Transcript_evidence=AK070452;ORF_evidence=Q6Z3Y9;GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: signal transduction (GO:0007165),Biological Process: intracellular signal transduction (GO:0035556),Molecular Function: phosphatidylinositol phospholipase C activity (GO:0004435),Molecular Function: protein binding (GO:0005515),Molecular Function: phosphoric diester hydrolase activity (GO:0008081);InterPro=Phosphoinositide phospholipase C family (IPR001192),PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain (IPR017946),Phosphatidylinositol-specific phospholipase C%2C X domain (IPR000909),Phospholipase C%2C phosphatidylinositol-specific%2C Y domain (IPR001711),C2 domain (IPR000008);NIAS_FLcDNA=J023050O04;Manual Curation=March 2%2C 2017;Literature_PMID=28157263;Oryzabase=20184;Expression=AK070452;TENOR=Os07t0694000-01;KEGG=Os07t0694000-01;Subcellular location=cytoplasm (GO:0005737)
Chr07	irgsp1_rep	five_prime_UTR	29548663	29548978	.	-	.	Parent=Os07t0694000-01
Chr07	irgsp1_rep	CDS	29547997	29548662	.	-	0	Parent=Os07t0694000-01
Chr07	irgsp1_rep	CDS	29547689	29547934	.	-	0	Parent=Os07t0694000-01
Chr07	irgsp1_rep	CDS	29547355	29547593	.	-	0	Parent=Os07t0694000-01
Chr07	irgsp1_rep	CDS	29547100	29547217	.	-	1	Parent=Os07t0694000-01
Chr07	irgsp1_rep	CDS	29546654	29546800	.	-	0	Parent=Os07t0694000-01
Chr07	irgsp1_rep	CDS	29546491	29546577	.	-	0	Parent=Os07t0694000-01
Chr07	irgsp1_rep	CDS	29546089	29546382	.	-	0	Parent=Os07t0694000-01
Chr07	irgsp1_rep	three_prime_UTR	29545898	29546088	.	-	.	Parent=Os07t0694000-01
Chr07	irgsp1_rep	mRNA	29545847	29547567	.	-	.	ID=Os07t0694000-02;Name=Os07t0694000-02;Locus_id=Os07g0694000;Oryzabase Gene Symbol Synonym(s)=OsPI-PLC1%2C PI-PLC1%2C OsPLC1%2C PLC1;Oryzabase Gene Name Synonym(s)=phosphoinositide-specific phospholipase C1%2C phospholipase C1;Note=Similar to Phosphoinositide-specific phospholipase C.;Transcript_evidence=AK061472 (DDBJ%2C Best hit);ORF_evidence=Q9AXF1 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: signal transduction (GO:0007165),Biological Process: intracellular signal transduction (GO:0035556),Molecular Function: phosphatidylinositol phospholipase C activity (GO:0004435),Molecular Function: protein binding (GO:0005515),Molecular Function: phosphoric diester hydrolase activity (GO:0008081);InterPro=C2 calcium-dependent membrane targeting (IPR000008),Phosphoinositide phospholipase C (IPR001192),Phospholipase C%2C phosphatidylinositol-specific%2C Y domain (IPR001711),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain (IPR017946),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=006-308-E05;Oryzabase=20184;Expression=AK061472;TENOR=Os07t0694000-02;KEGG=Os07t0694000-02 (EC:3.1.4.11)
Chr07	irgsp1_rep	five_prime_UTR	29547567	29547567	.	-	.	Parent=Os07t0694000-02
Chr07	irgsp1_rep	CDS	29547355	29547566	.	-	0	Parent=Os07t0694000-02
Chr07	irgsp1_rep	CDS	29547100	29547217	.	-	1	Parent=Os07t0694000-02
Chr07	irgsp1_rep	CDS	29546654	29546800	.	-	0	Parent=Os07t0694000-02
Chr07	irgsp1_rep	CDS	29546491	29546577	.	-	0	Parent=Os07t0694000-02
Chr07	irgsp1_rep	CDS	29546089	29546382	.	-	0	Parent=Os07t0694000-02
Chr07	irgsp1_rep	three_prime_UTR	29545847	29546088	.	-	.	Parent=Os07t0694000-02
Chr07	irgsp1_rep	mRNA	29546098	29546614	.	+	.	ID=Os07t0694050-00;Name=Os07t0694050-00;Locus_id=Os07g0694050;Note=Hypothetical gene.;Transcript_evidence=AK248585 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0694050-00;KEGG=Os07t0694050-00
Chr07	irgsp1_rep	five_prime_UTR	29546098	29546107	.	+	.	Parent=Os07t0694050-00
Chr07	irgsp1_rep	CDS	29546108	29546470	.	+	0	Parent=Os07t0694050-00
Chr07	irgsp1_rep	three_prime_UTR	29546471	29546614	.	+	.	Parent=Os07t0694050-00
Chr07	irgsp1_rep	mRNA	29556018	29558039	.	-	.	ID=Os07t0694200-01;Name=Os07t0694200-01;Locus_id=Os07g0694200;Note=Conserved hypothetical protein.;Transcript_evidence=AK071617 (DDBJ%2C Best hit);ORF_evidence=B9FV20 (UniProt);NIAS_FLcDNA=J023105N04;TENOR=Os07t0694200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	29557879	29558039	.	-	.	Parent=Os07t0694200-01
Chr07	irgsp1_rep	CDS	29557724	29557878	.	-	0	Parent=Os07t0694200-01
Chr07	irgsp1_rep	CDS	29556821	29557076	.	-	1	Parent=Os07t0694200-01
Chr07	irgsp1_rep	three_prime_UTR	29556693	29556820	.	-	.	Parent=Os07t0694200-01
Chr07	irgsp1_rep	three_prime_UTR	29556018	29556587	.	-	.	Parent=Os07t0694200-01
Chr07	irgsp1_rep	mRNA	29561290	29562373	.	-	.	ID=Os07t0694300-01;Name=Os07t0694300-01;Locus_id=Os07g0694300;Oryzabase Gene Symbol Synonym(s)=prx116;Oryzabase Gene Name Synonym(s)=class III peroxidase 116;Note=Similar to Peroxidase.;Transcript_evidence=AK061013 (DDBJ%2C Best hit);ORF_evidence=C1KA92 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=006-204-B06;Oryzabase=14633;TENOR=Os07t0694300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	29562372	29562373	.	-	.	Parent=Os07t0694300-01
Chr07	irgsp1_rep	CDS	29561484	29562371	.	-	0	Parent=Os07t0694300-01
Chr07	irgsp1_rep	three_prime_UTR	29561290	29561483	.	-	.	Parent=Os07t0694300-01
Chr07	irgsp1_rep	mRNA	29561868	29562402	.	+	.	ID=Os07t0694325-00;Name=Os07t0694325-00;Locus_id=Os07g0694325;Note=Hypothetical protein.;Transcript_evidence=BT084813 (DDBJ);ORF_evidence=longestORF;TENOR=Os07t0694325-00
Chr07	irgsp1_rep	CDS	29561868	29562402	.	+	0	Parent=Os07t0694325-00
Chr07	irgsp1_rep	mRNA	29566093	29571527	.	-	.	ID=Os07t0694400-01;Name=Os07t0694400-01;Locus_id=Os07g0694400;Oryzabase Gene Symbol Synonym(s)=OsIRX9%2C IRX9%2C OsGT43C/OsIRX9%2C OsGT43C;Oryzabase Gene Name Synonym(s)=IRREGULAR XYLEM 9%2C glycosyltransferase family GT43 member C;Note=Glycosyl transferase%2C family 43 protein.;Transcript_evidence=AK060667 (DDBJ%2C Best hit);ORF_evidence=Q6Z3Y6 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity (GO:0015018);InterPro=Glycosyl transferase%2C family 43 (IPR005027);NIAS_FLcDNA=001-028-E01;Oryzabase=11758;Expression=AK060667;TENOR=Os07t0694400-01;KEGG=Os07t0694400-01
Chr07	irgsp1_rep	five_prime_UTR	29571497	29571527	.	-	.	Parent=Os07t0694400-01
Chr07	irgsp1_rep	CDS	29570880	29571496	.	-	0	Parent=Os07t0694400-01
Chr07	irgsp1_rep	CDS	29568787	29569066	.	-	1	Parent=Os07t0694400-01
Chr07	irgsp1_rep	CDS	29566236	29566355	.	-	0	Parent=Os07t0694400-01
Chr07	irgsp1_rep	three_prime_UTR	29566093	29566235	.	-	.	Parent=Os07t0694400-01
Chr07	irgsp1_rep	mRNA	29576587	29578832	.	+	.	ID=Os07t0694500-01;Name=Os07t0694500-01;Locus_id=Os07g0694500;CGSNL Gene Symbol=DLN199;CGSNL Gene Name=DLN REPRESSOR 199;Oryzabase Gene Symbol Synonym(s)=OsDLN199;Oryzabase Gene Name Synonym(s)=DLN repressor 199%2C DLN motif protein 199;Note=Similar to PWWP domain containing protein.;Transcript_evidence=AK103290 (DDBJ%2C Best hit);ORF_evidence=B6UC13 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=PWWP (IPR000313),HMG-I/HMG-Y%2C DNA-binding%2C conserved site (IPR000637),AT hook%2C DNA-binding motif (IPR017956),AT hook-like (IPR020478);NIAS_FLcDNA=J033124O22;Oryzabase=23222;Expression=AK103290;TENOR=Os07t0694500-01;KEGG=Os07t0694500-01
Chr07	irgsp1_rep	five_prime_UTR	29576587	29576793	.	+	.	Parent=Os07t0694500-01
Chr07	irgsp1_rep	CDS	29576794	29578488	.	+	0	Parent=Os07t0694500-01
Chr07	irgsp1_rep	three_prime_UTR	29578489	29578525	.	+	.	Parent=Os07t0694500-01
Chr07	irgsp1_rep	three_prime_UTR	29578626	29578832	.	+	.	Parent=Os07t0694500-01
Chr07	irgsp1_rep	mRNA	29576667	29579587	.	+	.	ID=Os07t0694500-02;Name=Os07t0694500-02;Locus_id=Os07g0694500;CGSNL Gene Symbol=DLN199;CGSNL Gene Name=DLN REPRESSOR 199;Oryzabase Gene Symbol Synonym(s)=OsDLN199;Oryzabase Gene Name Synonym(s)=DLN repressor 199%2C DLN motif protein 199;Note=PWWP domain containing protein.;Transcript_evidence=AK105310 (DDBJ%2C Best hit);ORF_evidence=Q6Z3Y5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=PWWP (IPR000313),HMG-I/HMG-Y%2C DNA-binding%2C conserved site (IPR000637),AT hook%2C DNA-binding motif (IPR017956),AT hook-like (IPR020478);NIAS_FLcDNA=001-117-C07;Oryzabase=23222;Expression=AK105310;TENOR=Os07t0694500-02;KEGG=Os07t0694500-02
Chr07	irgsp1_rep	five_prime_UTR	29576667	29576793	.	+	.	Parent=Os07t0694500-02
Chr07	irgsp1_rep	CDS	29576794	29578032	.	+	0	Parent=Os07t0694500-02
Chr07	irgsp1_rep	CDS	29578252	29578488	.	+	0	Parent=Os07t0694500-02
Chr07	irgsp1_rep	three_prime_UTR	29578489	29578525	.	+	.	Parent=Os07t0694500-02
Chr07	irgsp1_rep	three_prime_UTR	29578626	29579207	.	+	.	Parent=Os07t0694500-02
Chr07	irgsp1_rep	three_prime_UTR	29579317	29579587	.	+	.	Parent=Os07t0694500-02
Chr07	irgsp1_rep	mRNA	29576669	29578848	.	+	.	ID=Os07t0694500-03;Name=Os07t0694500-03;Locus_id=Os07g0694500;CGSNL Gene Symbol=DLN199;CGSNL Gene Name=DLN REPRESSOR 199;Oryzabase Gene Symbol Synonym(s)=OsDLN199;Oryzabase Gene Name Synonym(s)=DLN repressor 199%2C DLN motif protein 199;Note=Similar to PWWP domain containing protein.;Transcript_evidence=AK072101 (DDBJ%2C Best hit);ORF_evidence=B6UC13 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=PWWP (IPR000313),HMG-I/HMG-Y%2C DNA-binding%2C conserved site (IPR000637),AT hook%2C DNA-binding motif (IPR017956),AT hook-like (IPR020478);NIAS_FLcDNA=J013116B13;Oryzabase=23222;Expression=AK072101;TENOR=Os07t0694500-03;KEGG=Os07t0694500-03
Chr07	irgsp1_rep	five_prime_UTR	29576669	29576793	.	+	.	Parent=Os07t0694500-03
Chr07	irgsp1_rep	CDS	29576794	29578488	.	+	0	Parent=Os07t0694500-03
Chr07	irgsp1_rep	three_prime_UTR	29578489	29578525	.	+	.	Parent=Os07t0694500-03
Chr07	irgsp1_rep	three_prime_UTR	29578626	29578848	.	+	.	Parent=Os07t0694500-03
Chr07	irgsp1_rep	mRNA	29579838	29583146	.	-	.	ID=Os07t0694600-01;Name=Os07t0694600-01;Locus_id=Os07g0694600;Oryzabase Gene Symbol Synonym(s)=Mtr1%2C MTR1%2C PDT%2C ADT;Oryzabase Gene Name Synonym(s)=prephenate dehydratase%2C arogenate dehydratase%2C 5MT resistant 1%2C 5-methyltryptophan resistant 1;Note=Prephenate dehydratase domain containing protein.;Transcript_evidence=AK066428 (DDBJ%2C Best hit);ORF_evidence=A8CF65 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: L-phenylalanine biosynthetic process (GO:0009094),Molecular Function: prephenate dehydratase activity (GO:0004664),Molecular Function: amino acid binding (GO:0016597);InterPro=Prephenate dehydratase (IPR001086),Amino acid-binding ACT (IPR002912),Prephenate dehydratase%2C conserved site (IPR018528);NIAS_FLcDNA=J013059A18;Oryzabase=14264;Expression=AK066428;TENOR=Os07t0694600-01;KEGG=Os07t0694600-01
Chr07	irgsp1_rep	five_prime_UTR	29583042	29583146	.	-	.	Parent=Os07t0694600-01
Chr07	irgsp1_rep	CDS	29582861	29583041	.	-	0	Parent=Os07t0694600-01
Chr07	irgsp1_rep	CDS	29582727	29582788	.	-	2	Parent=Os07t0694600-01
Chr07	irgsp1_rep	CDS	29582545	29582637	.	-	0	Parent=Os07t0694600-01
Chr07	irgsp1_rep	CDS	29581983	29582183	.	-	0	Parent=Os07t0694600-01
Chr07	irgsp1_rep	CDS	29581795	29581878	.	-	0	Parent=Os07t0694600-01
Chr07	irgsp1_rep	CDS	29581547	29581642	.	-	0	Parent=Os07t0694600-01
Chr07	irgsp1_rep	CDS	29581389	29581466	.	-	0	Parent=Os07t0694600-01
Chr07	irgsp1_rep	CDS	29581211	29581300	.	-	0	Parent=Os07t0694600-01
Chr07	irgsp1_rep	CDS	29581035	29581102	.	-	0	Parent=Os07t0694600-01
Chr07	irgsp1_rep	CDS	29580855	29580936	.	-	1	Parent=Os07t0694600-01
Chr07	irgsp1_rep	CDS	29580723	29580782	.	-	0	Parent=Os07t0694600-01
Chr07	irgsp1_rep	three_prime_UTR	29580694	29580722	.	-	.	Parent=Os07t0694600-01
Chr07	irgsp1_rep	three_prime_UTR	29579838	29580110	.	-	.	Parent=Os07t0694600-01
Chr07	irgsp1_rep	mRNA	29584033	29586303	.	-	.	ID=Os07t0694700-01;Name=Os07t0694700-01;Locus_id=Os07g0694700;RAP-DB Gene Symbol Synonym(s)=APX2%2C OsAPX2%2C APXb;RAP-DB Gene Name Synonym(s)=ascorbate peroxidase 2;CGSNL Gene Symbol=APX2;CGSNL Gene Name=L-ASCORBATE PEROXIDASE 2;Oryzabase Gene Symbol Synonym(s)=OsAPX2%2C OsAPx02%2C APXb%2C OsAPx2%2C OSAPX2%2C APx2%2C cAPX%2C OsAPX1%2C APX1;Oryzabase Gene Name Synonym(s)="L-ascorbate peroxidase 2%2C cytosolic"%2C ascorbate peroxidase 2%2C ascorbate peroxidase b;Note=Ascorbate peroxidase%2C ROS homeostasis%2C Chloroplast protection%2C Carbohydrate metabolism%2C Plant architecture%2C Fertility maintenance;Transcript_evidence=AK061715,AK068430,AB053297;ORF_evidence=Q9FE01;GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Haem peroxidase (IPR010255),Class I peroxidase (IPR002207),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Peroxidase%2C active site (IPR019794),Peroxidases heam-ligand binding site (IPR019793);NIAS_FLcDNA=001-037-H06,J013156P11;Manual Curation=March 27%2C 2018;Literature_PMID=29549445,23468992,15685422;Oryzabase=7167;Expression=AK061715;TENOR=Os07t0694700-01;KEGG=Os07t0694700-01 (EC:1.11.1.11)
Chr07	irgsp1_rep	five_prime_UTR	29586228	29586303	.	-	.	Parent=Os07t0694700-01
Chr07	irgsp1_rep	CDS	29586106	29586227	.	-	0	Parent=Os07t0694700-01
Chr07	irgsp1_rep	CDS	29585838	29586012	.	-	1	Parent=Os07t0694700-01
Chr07	irgsp1_rep	CDS	29585687	29585752	.	-	0	Parent=Os07t0694700-01
Chr07	irgsp1_rep	CDS	29585446	29585494	.	-	0	Parent=Os07t0694700-01
Chr07	irgsp1_rep	CDS	29585002	29585087	.	-	2	Parent=Os07t0694700-01
Chr07	irgsp1_rep	CDS	29584833	29584912	.	-	0	Parent=Os07t0694700-01
Chr07	irgsp1_rep	CDS	29584614	29584716	.	-	1	Parent=Os07t0694700-01
Chr07	irgsp1_rep	CDS	29584421	29584479	.	-	0	Parent=Os07t0694700-01
Chr07	irgsp1_rep	CDS	29584311	29584326	.	-	1	Parent=Os07t0694700-01
Chr07	irgsp1_rep	three_prime_UTR	29584033	29584310	.	-	.	Parent=Os07t0694700-01
Chr07	irgsp1_rep	mRNA	29589952	29593812	.	-	.	ID=Os07t0694800-01;Name=Os07t0694800-01;Locus_id=Os07g0694800;Note=Protein of unknown function DUF155 family protein.;Transcript_evidence=AK065595 (DDBJ%2C Best hit);ORF_evidence=A3BNR3 (UniProt);InterPro=Protein of unknown function DUF155 (IPR003734);NIAS_FLcDNA=J013026A09;Expression=AK065595;TENOR=Os07t0694800-01;KEGG=Os07t0694800-01
Chr07	irgsp1_rep	five_prime_UTR	29593734	29593812	.	-	.	Parent=Os07t0694800-01
Chr07	irgsp1_rep	CDS	29593369	29593733	.	-	0	Parent=Os07t0694800-01
Chr07	irgsp1_rep	CDS	29593153	29593264	.	-	1	Parent=Os07t0694800-01
Chr07	irgsp1_rep	CDS	29592514	29592676	.	-	0	Parent=Os07t0694800-01
Chr07	irgsp1_rep	CDS	29591167	29591315	.	-	2	Parent=Os07t0694800-01
Chr07	irgsp1_rep	CDS	29590935	29591086	.	-	0	Parent=Os07t0694800-01
Chr07	irgsp1_rep	CDS	29590312	29590426	.	-	1	Parent=Os07t0694800-01
Chr07	irgsp1_rep	CDS	29590075	29590203	.	-	0	Parent=Os07t0694800-01
Chr07	irgsp1_rep	three_prime_UTR	29589952	29590074	.	-	.	Parent=Os07t0694800-01
Chr07	irgsp1_rep	mRNA	29616705	29629215	.	+	.	ID=Os07t0695100-01;Name=Os07t0695100-01;Locus_id=Os07g0695100;RAP-DB Gene Symbol Synonym(s)=Hd2%2C OsPRR37%2C PRR37%2C Prr4%2C OsPRR4%2C DTH7%2C OsCCT28%2C Ghd7.1%2C EH7-2;RAP-DB Gene Name Synonym(s)=Heading date 2%2C PSEUDO-RESPONSE REGULATOR 37%2C pseudo-response regulator 4%2C Days to heading 7%2C CCT domain-containing gene 28%2C"grain number%2C plant height and heading date 7.1"%2C Early heading7-2;CGSNL Gene Symbol=HD2;CGSNL Gene Name=Heading date 2;Oryzabase Gene Symbol Synonym(s)=Hd2(t)%2C Hd2%2C qHD2(t)%2C OsPRR37%2C Os-PRR37%2C PRR37%2C Prr4%2C OsPRR4%2C DTH7%2C OsCCT28%2C Ghd7.1%2C PRR37/Hd2%2C EH7-2%2C EH7-2/Hd2%2C Hd2/PRR37%2C PRR37-1a%2C PRR37-1b%2C PRR37-1c%2C PRR37-2a%2C PRR37- 2%2C HD7.2;Oryzabase Gene Name Synonym(s)=Heading date (QTL)-2(t)%2C Heading date 2%2C PSEUDO-RESPONSE REGULATOR 37%2C PSEUDO RESPONSE REGULATOR 37%2C pseudo-response regulator 4%2C Days to heading 7%2C Days to heading on Chromosome 7%2C CCT domain-containing gene 28%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 28%2C CCT domain protein 28%2C "grain number%2C plant height and heading date 7.1"%2C Early heading7-2%2C Heading date 7.2;Note=Pseudo response regulator%2C Heading date%2C Long-day repression;Transcript_evidence=AK066112,AB189039;ORF_evidence=Q0D3B6;GO=Biological Process: phosphorelay signal transduction system (GO:0000160),Molecular Function: protein binding (GO:0005515);InterPro=CheY-like superfamily (IPR011006),Signal transduction response regulator%2C receiver domain (IPR001789),CCT domain (IPR010402);NIAS_FLcDNA=J013051N02;Manual Curation=July 10%2C 2017;Literature_PMID=23713079,15725670,14634161;Oryzabase=2274;Expression=AK066112;TENOR=Os07t0695100-01;KEGG=Os07t0695100-01
Chr07	irgsp1_rep	five_prime_UTR	29616705	29616865	.	+	.	Parent=Os07t0695100-01
Chr07	irgsp1_rep	five_prime_UTR	29616936	29617060	.	+	.	Parent=Os07t0695100-01
Chr07	irgsp1_rep	five_prime_UTR	29617156	29617185	.	+	.	Parent=Os07t0695100-01
Chr07	irgsp1_rep	five_prime_UTR	29617279	29617429	.	+	.	Parent=Os07t0695100-01
Chr07	irgsp1_rep	CDS	29617430	29617691	.	+	0	Parent=Os07t0695100-01
Chr07	irgsp1_rep	CDS	29623154	29623315	.	+	2	Parent=Os07t0695100-01
Chr07	irgsp1_rep	CDS	29623426	29623559	.	+	2	Parent=Os07t0695100-01
Chr07	irgsp1_rep	CDS	29623695	29623862	.	+	0	Parent=Os07t0695100-01
Chr07	irgsp1_rep	CDS	29626395	29626581	.	+	0	Parent=Os07t0695100-01
Chr07	irgsp1_rep	CDS	29626676	29627087	.	+	2	Parent=Os07t0695100-01
Chr07	irgsp1_rep	CDS	29627169	29627946	.	+	1	Parent=Os07t0695100-01
Chr07	irgsp1_rep	CDS	29628475	29628600	.	+	0	Parent=Os07t0695100-01
Chr07	irgsp1_rep	three_prime_UTR	29628601	29629215	.	+	.	Parent=Os07t0695100-01
Chr07	irgsp1_rep	mRNA	29617597	29626561	.	+	.	ID=Os07t0695100-02;Name=Os07t0695100-02;Locus_id=Os07g0695100;CGSNL Gene Symbol=HD2;CGSNL Gene Name=Heading date 2;Oryzabase Gene Symbol Synonym(s)=Hd2(t)%2C Hd2%2C qHD2(t)%2C OsPRR37%2C Os-PRR37%2C PRR37%2C Prr4%2C OsPRR4%2C DTH7%2C OsCCT28%2C Ghd7.1%2C PRR37/Hd2%2C EH7-2%2C EH7-2/Hd2%2C Hd2/PRR37%2C PRR37-1a%2C PRR37-1b%2C PRR37-1c%2C PRR37-2a%2C PRR37- 2%2C HD7.2;Oryzabase Gene Name Synonym(s)=Heading date (QTL)-2(t)%2C Heading date 2%2C PSEUDO-RESPONSE REGULATOR 37%2C PSEUDO RESPONSE REGULATOR 37%2C pseudo-response regulator 4%2C Days to heading 7%2C Days to heading on Chromosome 7%2C CCT domain-containing gene 28%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 28%2C CCT domain protein 28%2C "grain number%2C plant height and heading date 7.1"%2C Early heading7-2%2C Heading date 7.2;Note=Similar to Two-component response regulator-like PRR37.;Transcript_evidence=AK059514 (DDBJ%2C Best hit);ORF_evidence=Q0D3B6 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: two-component response regulator activity (GO:0000156);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),CheY-like superfamily (IPR011006);NIAS_FLcDNA=001-029-B09;Oryzabase=2274;TENOR=Os07t0695100-02
Chr07	irgsp1_rep	five_prime_UTR	29617597	29617597	.	+	.	Parent=Os07t0695100-02
Chr07	irgsp1_rep	CDS	29617598	29617691	.	+	0	Parent=Os07t0695100-02
Chr07	irgsp1_rep	CDS	29623154	29623315	.	+	2	Parent=Os07t0695100-02
Chr07	irgsp1_rep	CDS	29623426	29623559	.	+	2	Parent=Os07t0695100-02
Chr07	irgsp1_rep	CDS	29623695	29623862	.	+	0	Parent=Os07t0695100-02
Chr07	irgsp1_rep	CDS	29626395	29626561	.	+	0	Parent=Os07t0695100-02
Chr07	irgsp1_rep	mRNA	29623146	29628554	.	-	.	ID=Os07t0695200-00;Name=Os07t0695200-00;Locus_id=Os07g0695200;Note=Non-protein coding transcript.;Transcript_evidence=tplb0030a07 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os07t0695200-00
Chr07	irgsp1_rep	exon	29628484	29628554	.	-	.	Parent=Os07t0695200-00
Chr07	irgsp1_rep	exon	29627157	29627951	.	-	.	Parent=Os07t0695200-00
Chr07	irgsp1_rep	exon	29626681	29627072	.	-	.	Parent=Os07t0695200-00
Chr07	irgsp1_rep	exon	29626412	29626591	.	-	.	Parent=Os07t0695200-00
Chr07	irgsp1_rep	exon	29623732	29623870	.	-	.	Parent=Os07t0695200-00
Chr07	irgsp1_rep	exon	29623423	29623630	.	-	.	Parent=Os07t0695200-00
Chr07	irgsp1_rep	exon	29623146	29623313	.	-	.	Parent=Os07t0695200-00
Chr07	irgsp1_rep	mRNA	29630971	29633467	.	+	.	ID=Os07t0695300-01;Name=Os07t0695300-01;Locus_id=Os07g0695300;CGSNL Gene Symbol=RLCK243;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 243;Oryzabase Gene Symbol Synonym(s)=OsRLCK243;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 243;Note=Similar to Serine/threonine-protein kinase PBS1 (EC 2.7.1.37) (AvrPphB susceptible protein 1).;Transcript_evidence=AK072806 (DDBJ%2C Best hit);ORF_evidence=Q32SF8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023137F15;Oryzabase=18935;Expression=AK072806;TENOR=Os07t0695300-01;KEGG=Os07t0695300-01 (EC:2.7.1.37)
Chr07	irgsp1_rep	five_prime_UTR	29630971	29631087	.	+	.	Parent=Os07t0695300-01
Chr07	irgsp1_rep	CDS	29631088	29631175	.	+	0	Parent=Os07t0695300-01
Chr07	irgsp1_rep	CDS	29631433	29631675	.	+	2	Parent=Os07t0695300-01
Chr07	irgsp1_rep	CDS	29631862	29632053	.	+	2	Parent=Os07t0695300-01
Chr07	irgsp1_rep	CDS	29632149	29632540	.	+	2	Parent=Os07t0695300-01
Chr07	irgsp1_rep	CDS	29632726	29632983	.	+	0	Parent=Os07t0695300-01
Chr07	irgsp1_rep	three_prime_UTR	29632984	29633467	.	+	.	Parent=Os07t0695300-01
Chr07	irgsp1_rep	mRNA	29631528	29633467	.	+	.	ID=Os07t0695300-02;Name=Os07t0695300-02;Locus_id=Os07g0695300;CGSNL Gene Symbol=RLCK243;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 243;Oryzabase Gene Symbol Synonym(s)=OsRLCK243;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 243;Note=Similar to Serine/threonine kinase.;Transcript_evidence=AK072306 (DDBJ%2C Best hit);ORF_evidence=Q32SF8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023023M19;Oryzabase=18935;Expression=AK072306;TENOR=Os07t0695300-02;KEGG=Os07t0695300-02
Chr07	irgsp1_rep	CDS	29631528	29631675	.	+	0	Parent=Os07t0695300-02
Chr07	irgsp1_rep	CDS	29631862	29632053	.	+	2	Parent=Os07t0695300-02
Chr07	irgsp1_rep	CDS	29632149	29632540	.	+	2	Parent=Os07t0695300-02
Chr07	irgsp1_rep	CDS	29632726	29632983	.	+	0	Parent=Os07t0695300-02
Chr07	irgsp1_rep	three_prime_UTR	29632984	29633467	.	+	.	Parent=Os07t0695300-02
Chr07	irgsp1_rep	mRNA	29633615	29638363	.	-	.	ID=Os07t0695400-01;Name=Os07t0695400-01;Locus_id=Os07g0695400;Note=KIP1-like domain containing protein.;Transcript_evidence=AK100615 (DDBJ%2C Best hit);ORF_evidence=B8B6C0 (UniProt);InterPro=KIP1-like (IPR011684);NIAS_FLcDNA=J023108B01;Expression=AK100615;TENOR=Os07t0695400-01;KEGG=Os07t0695400-01
Chr07	irgsp1_rep	five_prime_UTR	29637979	29638363	.	-	.	Parent=Os07t0695400-01
Chr07	irgsp1_rep	CDS	29637885	29637978	.	-	0	Parent=Os07t0695400-01
Chr07	irgsp1_rep	CDS	29634345	29637769	.	-	2	Parent=Os07t0695400-01
Chr07	irgsp1_rep	three_prime_UTR	29633615	29634344	.	-	.	Parent=Os07t0695400-01
Chr07	irgsp1_rep	mRNA	29634137	29638256	.	-	.	ID=Os07t0695400-02;Name=Os07t0695400-02;Locus_id=Os07g0695400;Note=KIP1-like domain containing protein.;Transcript_evidence=AK106304 (DDBJ%2C Best hit);ORF_evidence=B8B6C0 (UniProt);InterPro=KIP1-like (IPR011684);NIAS_FLcDNA=002-101-C08;Expression=AK106304;TENOR=Os07t0695400-02;KEGG=Os07t0695400-02
Chr07	irgsp1_rep	five_prime_UTR	29637979	29638256	.	-	.	Parent=Os07t0695400-02
Chr07	irgsp1_rep	CDS	29637885	29637978	.	-	0	Parent=Os07t0695400-02
Chr07	irgsp1_rep	CDS	29634345	29637769	.	-	2	Parent=Os07t0695400-02
Chr07	irgsp1_rep	three_prime_UTR	29634344	29634344	.	-	.	Parent=Os07t0695400-02
Chr07	irgsp1_rep	three_prime_UTR	29634137	29634237	.	-	.	Parent=Os07t0695400-02
Chr07	irgsp1_rep	mRNA	29653137	29654270	.	+	.	ID=Os07t0695700-00;Name=Os07t0695700-00;Locus_id=Os07g0695700;Note=Hypothetical conserved gene.;Transcript_evidence=EU971294 (DDBJ);ORF_evidence=Q6Z3X6 (UniProt);TENOR=Os07t0695700-00;KEGG=Os07t0695700-00
Chr07	irgsp1_rep	five_prime_UTR	29653137	29653137	.	+	.	Parent=Os07t0695700-00
Chr07	irgsp1_rep	CDS	29653138	29653533	.	+	0	Parent=Os07t0695700-00
Chr07	irgsp1_rep	CDS	29653717	29653774	.	+	0	Parent=Os07t0695700-00
Chr07	irgsp1_rep	CDS	29653862	29653979	.	+	2	Parent=Os07t0695700-00
Chr07	irgsp1_rep	CDS	29654111	29654270	.	+	1	Parent=Os07t0695700-00
Chr07	irgsp1_rep	mRNA	29656862	29662419	.	+	.	ID=Os07t0695800-01;Name=Os07t0695800-01;Locus_id=Os07g0695800;Oryzabase Gene Name Synonym(s)=2-oxoglutarate dehydrogenase E1 component;Note=Similar to 2-oxoglutarate dehydrogenase%2C E1 component.;Transcript_evidence=AK100482 (DDBJ%2C Best hit);ORF_evidence=Q01LD8 (UniProt);GO=Biological Process: tricarboxylic acid cycle (GO:0006099),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxoglutarate dehydrogenase (succinyl-transferring) activity (GO:0004591),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C disulfide as acceptor (GO:0016624),Molecular Function: thiamine pyrophosphate binding (GO:0030976);InterPro=Dehydrogenase%2C E1 component (IPR001017),Transketolase-like%2C pyrimidine-binding domain (IPR005475),2-oxoglutarate dehydrogenase%2C E1 component (IPR011603);NIAS_FLcDNA=J023097A04;Oryzabase=17644;Expression=AK100482;TENOR=Os07t0695800-01;KEGG=Os07t0695800-01 (EC:1.2.4.2)
Chr07	irgsp1_rep	five_prime_UTR	29656862	29657130	.	+	.	Parent=Os07t0695800-01
Chr07	irgsp1_rep	five_prime_UTR	29657245	29657271	.	+	.	Parent=Os07t0695800-01
Chr07	irgsp1_rep	CDS	29657272	29658786	.	+	0	Parent=Os07t0695800-01
Chr07	irgsp1_rep	CDS	29659001	29659227	.	+	0	Parent=Os07t0695800-01
Chr07	irgsp1_rep	CDS	29659317	29659649	.	+	1	Parent=Os07t0695800-01
Chr07	irgsp1_rep	CDS	29659807	29660053	.	+	1	Parent=Os07t0695800-01
Chr07	irgsp1_rep	CDS	29660526	29660654	.	+	0	Parent=Os07t0695800-01
Chr07	irgsp1_rep	CDS	29660739	29660954	.	+	0	Parent=Os07t0695800-01
Chr07	irgsp1_rep	CDS	29661032	29661155	.	+	0	Parent=Os07t0695800-01
Chr07	irgsp1_rep	CDS	29661955	29662190	.	+	2	Parent=Os07t0695800-01
Chr07	irgsp1_rep	three_prime_UTR	29662191	29662419	.	+	.	Parent=Os07t0695800-01
Chr07	irgsp1_rep	mRNA	29658998	29662462	.	+	.	ID=Os07t0695800-02;Name=Os07t0695800-02;Locus_id=Os07g0695800;Oryzabase Gene Name Synonym(s)=2-oxoglutarate dehydrogenase E1 component;Note=Similar to OSIGBa0096P03.7 protein.;Transcript_evidence=AK059174 (DDBJ%2C Best hit);ORF_evidence=Q01LD8 (UniProt);GO=Biological Process: tricarboxylic acid cycle (GO:0006099),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxoglutarate dehydrogenase (succinyl-transferring) activity (GO:0004591),Molecular Function: thiamine pyrophosphate binding (GO:0030976);InterPro=Transketolase-like%2C pyrimidine-binding domain (IPR005475),2-oxoglutarate dehydrogenase%2C E1 component (IPR011603);NIAS_FLcDNA=001-023-F04;Oryzabase=17644;Expression=AK059174;TENOR=Os07t0695800-02;KEGG=Os07t0695800-02 (EC:1.2.4.2)
Chr07	irgsp1_rep	CDS	29658998	29659227	.	+	0	Parent=Os07t0695800-02
Chr07	irgsp1_rep	CDS	29659317	29659649	.	+	1	Parent=Os07t0695800-02
Chr07	irgsp1_rep	CDS	29659807	29660053	.	+	1	Parent=Os07t0695800-02
Chr07	irgsp1_rep	CDS	29660526	29660654	.	+	0	Parent=Os07t0695800-02
Chr07	irgsp1_rep	CDS	29660739	29660954	.	+	0	Parent=Os07t0695800-02
Chr07	irgsp1_rep	CDS	29661032	29661155	.	+	0	Parent=Os07t0695800-02
Chr07	irgsp1_rep	CDS	29661955	29662190	.	+	2	Parent=Os07t0695800-02
Chr07	irgsp1_rep	three_prime_UTR	29662191	29662462	.	+	.	Parent=Os07t0695800-02
Chr07	irgsp1_rep	mRNA	29663362	29666163	.	+	.	ID=Os07t0695900-01;Name=Os07t0695900-01;Locus_id=Os07g0695900;Note=Homeodomain-related domain containing protein.;Transcript_evidence=AK071940 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J013077N22;Expression=AK071940;TENOR=Os07t0695900-01;KEGG=Os07t0695900-01
Chr07	irgsp1_rep	five_prime_UTR	29663362	29663395	.	+	.	Parent=Os07t0695900-01
Chr07	irgsp1_rep	CDS	29663396	29663852	.	+	0	Parent=Os07t0695900-01
Chr07	irgsp1_rep	CDS	29664062	29664486	.	+	2	Parent=Os07t0695900-01
Chr07	irgsp1_rep	CDS	29665179	29665333	.	+	0	Parent=Os07t0695900-01
Chr07	irgsp1_rep	CDS	29665689	29665755	.	+	1	Parent=Os07t0695900-01
Chr07	irgsp1_rep	CDS	29665830	29665880	.	+	0	Parent=Os07t0695900-01
Chr07	irgsp1_rep	three_prime_UTR	29665881	29666163	.	+	.	Parent=Os07t0695900-01
Chr07	irgsp1_rep	mRNA	29666450	29668733	.	-	.	ID=Os07t0696000-01;Name=Os07t0696000-01;Locus_id=Os07g0696000;Note=Conserved hypothetical protein.;Transcript_evidence=AK108592 (DDBJ%2C Best hit);ORF_evidence=Q67IX7 (UniProt);NIAS_FLcDNA=002-146-D05;TENOR=Os07t0696000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	29668523	29668733	.	-	.	Parent=Os07t0696000-01
Chr07	irgsp1_rep	CDS	29668382	29668522	.	-	0	Parent=Os07t0696000-01
Chr07	irgsp1_rep	three_prime_UTR	29666450	29668381	.	-	.	Parent=Os07t0696000-01
Chr07	irgsp1_rep	mRNA	29679016	29682768	.	-	.	ID=Os07t0696100-01;Name=Os07t0696100-01;Locus_id=Os07g0696100;Note=Conserved hypothetical protein.;Transcript_evidence=AK071018 (DDBJ%2C Best hit);ORF_evidence=B8BN83 (UniProt);NIAS_FLcDNA=J023081H07;TENOR=Os07t0696100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr07	irgsp1_rep	five_prime_UTR	29682560	29682768	.	-	.	Parent=Os07t0696100-01
Chr07	irgsp1_rep	five_prime_UTR	29681807	29681836	.	-	.	Parent=Os07t0696100-01
Chr07	irgsp1_rep	CDS	29681627	29681806	.	-	0	Parent=Os07t0696100-01
Chr07	irgsp1_rep	three_prime_UTR	29681596	29681626	.	-	.	Parent=Os07t0696100-01
Chr07	irgsp1_rep	three_prime_UTR	29680222	29680483	.	-	.	Parent=Os07t0696100-01
Chr07	irgsp1_rep	three_prime_UTR	29680073	29680100	.	-	.	Parent=Os07t0696100-01
Chr07	irgsp1_rep	three_prime_UTR	29679834	29679989	.	-	.	Parent=Os07t0696100-01
Chr07	irgsp1_rep	three_prime_UTR	29679331	29679469	.	-	.	Parent=Os07t0696100-01
Chr07	irgsp1_rep	three_prime_UTR	29679016	29679219	.	-	.	Parent=Os07t0696100-01
Chr08	irgsp1_rep	mRNA	17351	20091	.	+	.	ID=Os08t0100150-01;Name=Os08t0100150-01;Locus_id=Os08g0100150;Note=Conserved hypothetical protein.;Transcript_evidence=AK241957 (DDBJ%2C Best hit);ORF_evidence=NP_001175350.1 (RefSeq);NIAS_FLcDNA=J075093A11;TENOR=Os08t0100150-01;KEGG=Os08t0100150-01
Chr08	irgsp1_rep	five_prime_UTR	17351	17532	.	+	.	Parent=Os08t0100150-01
Chr08	irgsp1_rep	CDS	17533	17546	.	+	0	Parent=Os08t0100150-01
Chr08	irgsp1_rep	CDS	19090	19354	.	+	1	Parent=Os08t0100150-01
Chr08	irgsp1_rep	three_prime_UTR	19355	20091	.	+	.	Parent=Os08t0100150-01
Chr08	irgsp1_rep	mRNA	18289	24063	.	-	.	ID=Os08t0100200-00;Name=Os08t0100200-00;Locus_id=Os08g0100200;Note=Similar to ZIP transporter.;Transcript_evidence=ab initio prediction;ORF_evidence=XP_002299235.1 (RefSeq);TENOR=Os08t0100200-00;KEGG=Os08t0100200-00
Chr08	irgsp1_rep	CDS	24000	24063	.	-	0	Parent=Os08t0100200-00
Chr08	irgsp1_rep	CDS	23741	23799	.	-	2	Parent=Os08t0100200-00
Chr08	irgsp1_rep	CDS	23518	23610	.	-	0	Parent=Os08t0100200-00
Chr08	irgsp1_rep	CDS	23363	23449	.	-	0	Parent=Os08t0100200-00
Chr08	irgsp1_rep	CDS	23180	23276	.	-	0	Parent=Os08t0100200-00
Chr08	irgsp1_rep	CDS	22327	22388	.	-	2	Parent=Os08t0100200-00
Chr08	irgsp1_rep	CDS	21687	21808	.	-	0	Parent=Os08t0100200-00
Chr08	irgsp1_rep	CDS	21290	21357	.	-	1	Parent=Os08t0100200-00
Chr08	irgsp1_rep	CDS	20820	20937	.	-	2	Parent=Os08t0100200-00
Chr08	irgsp1_rep	CDS	18289	18376	.	-	1	Parent=Os08t0100200-00
Chr08	irgsp1_rep	mRNA	24352	25840	.	+	.	ID=Os08t0100300-01;Name=Os08t0100300-01;Locus_id=Os08g0100300;Note=Non-protein coding transcript.;Transcript_evidence=AK108701 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-149-H09;TENOR=Os08t0100300-01
Chr08	irgsp1_rep	exon	24352	25079	.	+	.	Parent=Os08t0100300-01
Chr08	irgsp1_rep	exon	25182	25373	.	+	.	Parent=Os08t0100300-01
Chr08	irgsp1_rep	exon	25479	25840	.	+	.	Parent=Os08t0100300-01
Chr08	irgsp1_rep	mRNA	26273	33514	.	-	.	ID=Os08t0100400-01;Name=Os08t0100400-01;Locus_id=Os08g0100400;CGSNL Gene Symbol=DLN200;CGSNL Gene Name=DLN REPRESSOR 200;Oryzabase Gene Symbol Synonym(s)=OsDLN200;Oryzabase Gene Name Synonym(s)=DLN repressor 200%2C DLN motif protein 200;Note=Zinc finger%2C RING-CH-type domain containing protein.;Transcript_evidence=AK121153 (DDBJ%2C Best hit);ORF_evidence=B8B9X2 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-CH-type (IPR011016),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J023078M01;Oryzabase=23223;TENOR=Os08t0100400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	33445	33514	.	-	.	Parent=Os08t0100400-01
Chr08	irgsp1_rep	CDS	32713	33444	.	-	0	Parent=Os08t0100400-01
Chr08	irgsp1_rep	CDS	31563	32159	.	-	0	Parent=Os08t0100400-01
Chr08	irgsp1_rep	CDS	31263	31468	.	-	0	Parent=Os08t0100400-01
Chr08	irgsp1_rep	CDS	30876	31173	.	-	1	Parent=Os08t0100400-01
Chr08	irgsp1_rep	three_prime_UTR	28352	30875	.	-	.	Parent=Os08t0100400-01
Chr08	irgsp1_rep	three_prime_UTR	28101	28264	.	-	.	Parent=Os08t0100400-01
Chr08	irgsp1_rep	three_prime_UTR	27872	28018	.	-	.	Parent=Os08t0100400-01
Chr08	irgsp1_rep	three_prime_UTR	26273	26941	.	-	.	Parent=Os08t0100400-01
Chr08	irgsp1_rep	mRNA	31650	33488	.	-	.	ID=Os08t0100400-02;Name=Os08t0100400-02;Locus_id=Os08g0100400;CGSNL Gene Symbol=DLN200;CGSNL Gene Name=DLN REPRESSOR 200;Oryzabase Gene Symbol Synonym(s)=OsDLN200;Oryzabase Gene Name Synonym(s)=DLN repressor 200%2C DLN motif protein 200;Note=Hypothetical conserved gene.;Transcript_evidence=AK102424 (DDBJ%2C Best hit);ORF_evidence=B8B9X2 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-CH-type (IPR011016),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J033093E21;Oryzabase=23223;Expression=AK102424;TENOR=Os08t0100400-02;KEGG=Os08t0100400-02 (EC:6.3.2.19)
Chr08	irgsp1_rep	five_prime_UTR	33445	33488	.	-	.	Parent=Os08t0100400-02
Chr08	irgsp1_rep	CDS	32713	33444	.	-	0	Parent=Os08t0100400-02
Chr08	irgsp1_rep	CDS	31650	32159	.	-	0	Parent=Os08t0100400-02
Chr08	irgsp1_rep	mRNA	36145	45629	.	+	.	ID=Os08t0100500-01;Name=Os08t0100500-01;Locus_id=Os08g0100500;Note=Regulation of nuclear pre-mRNA protein domain containing protein.;Transcript_evidence=AK120880 (DDBJ%2C Best hit);ORF_evidence=B8B9X3 (UniProt);InterPro=PWWP (IPR000313),RNA polymerase II%2C large subunit%2C CTD (IPR006569);NIAS_FLcDNA=J023027K12;Expression=AK120880;TENOR=Os08t0100500-01;KEGG=Os08t0100500-01
Chr08	irgsp1_rep	five_prime_UTR	36145	36431	.	+	.	Parent=Os08t0100500-01
Chr08	irgsp1_rep	CDS	36432	36542	.	+	0	Parent=Os08t0100500-01
Chr08	irgsp1_rep	CDS	36636	36712	.	+	0	Parent=Os08t0100500-01
Chr08	irgsp1_rep	CDS	38015	39907	.	+	1	Parent=Os08t0100500-01
Chr08	irgsp1_rep	CDS	39990	40494	.	+	1	Parent=Os08t0100500-01
Chr08	irgsp1_rep	CDS	40597	40705	.	+	0	Parent=Os08t0100500-01
Chr08	irgsp1_rep	CDS	40783	40895	.	+	2	Parent=Os08t0100500-01
Chr08	irgsp1_rep	CDS	40966	41153	.	+	0	Parent=Os08t0100500-01
Chr08	irgsp1_rep	CDS	41828	42476	.	+	1	Parent=Os08t0100500-01
Chr08	irgsp1_rep	CDS	42561	43038	.	+	0	Parent=Os08t0100500-01
Chr08	irgsp1_rep	CDS	43107	43202	.	+	2	Parent=Os08t0100500-01
Chr08	irgsp1_rep	CDS	43389	43456	.	+	2	Parent=Os08t0100500-01
Chr08	irgsp1_rep	three_prime_UTR	43457	43488	.	+	.	Parent=Os08t0100500-01
Chr08	irgsp1_rep	three_prime_UTR	43648	43707	.	+	.	Parent=Os08t0100500-01
Chr08	irgsp1_rep	three_prime_UTR	45317	45629	.	+	.	Parent=Os08t0100500-01
Chr08	irgsp1_rep	mRNA	41839	43965	.	+	.	ID=Os08t0100500-02;Name=Os08t0100500-02;Locus_id=Os08g0100500;Note=Conserved hypothetical protein.;Transcript_evidence=AK109496 (DDBJ%2C Best hit);ORF_evidence=B8B9X3 (UniProt);NIAS_FLcDNA=001-206-C02;TENOR=Os08t0100500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	41839	41936	.	+	.	Parent=Os08t0100500-02
Chr08	irgsp1_rep	CDS	41937	42476	.	+	0	Parent=Os08t0100500-02
Chr08	irgsp1_rep	CDS	42561	43038	.	+	0	Parent=Os08t0100500-02
Chr08	irgsp1_rep	CDS	43117	43142	.	+	2	Parent=Os08t0100500-02
Chr08	irgsp1_rep	three_prime_UTR	43143	43202	.	+	.	Parent=Os08t0100500-02
Chr08	irgsp1_rep	three_prime_UTR	43389	43488	.	+	.	Parent=Os08t0100500-02
Chr08	irgsp1_rep	three_prime_UTR	43648	43965	.	+	.	Parent=Os08t0100500-02
Chr08	irgsp1_rep	mRNA	43787	45928	.	+	.	ID=Os08t0100500-03;Name=Os08t0100500-03;Locus_id=Os08g0100500;Note=Hypothetical conserved gene.;Transcript_evidence=AK062010 (DDBJ%2C Best hit);ORF_evidence=B8B9X4 (UniProt);NIAS_FLcDNA=001-043-E05;Expression=AK062010;TENOR=Os08t0100500-03;KEGG=Os08t0100500-03
Chr08	irgsp1_rep	five_prime_UTR	43787	43844	.	+	.	Parent=Os08t0100500-03
Chr08	irgsp1_rep	five_prime_UTR	45317	45611	.	+	.	Parent=Os08t0100500-03
Chr08	irgsp1_rep	CDS	45612	45797	.	+	0	Parent=Os08t0100500-03
Chr08	irgsp1_rep	three_prime_UTR	45798	45928	.	+	.	Parent=Os08t0100500-03
Chr08	irgsp1_rep	mRNA	51679	53565	.	+	.	ID=Os08t0100600-01;Name=Os08t0100600-01;Locus_id=Os08g0100600;Note=Protein of unknown function DUF789 family protein.;Transcript_evidence=AK102372 (DDBJ%2C Best hit);ORF_evidence=D0ABB4 (UniProt);InterPro=Protein of unknown function DUF789 (IPR008507);NIAS_FLcDNA=J033091L19;Expression=AK102372;TENOR=Os08t0100600-01;KEGG=Os08t0100600-01
Chr08	irgsp1_rep	five_prime_UTR	51679	51679	.	+	.	Parent=Os08t0100600-01
Chr08	irgsp1_rep	CDS	51680	51759	.	+	0	Parent=Os08t0100600-01
Chr08	irgsp1_rep	CDS	51878	52052	.	+	1	Parent=Os08t0100600-01
Chr08	irgsp1_rep	CDS	52790	53005	.	+	0	Parent=Os08t0100600-01
Chr08	irgsp1_rep	three_prime_UTR	53006	53565	.	+	.	Parent=Os08t0100600-01
Chr08	irgsp1_rep	mRNA	54055	58284	.	+	.	ID=Os08t0100700-01;Name=Os08t0100700-01;Locus_id=Os08g0100700;Note=Hypothetical conserved gene.;Transcript_evidence=AK242646 (DDBJ%2C Best hit);ORF_evidence=Q6Z1Z5 (UniProt);NIAS_FLcDNA=J090025G05;TENOR=Os08t0100700-01;KEGG=Os08t0100700-01
Chr08	irgsp1_rep	five_prime_UTR	54055	54193	.	+	.	Parent=Os08t0100700-01
Chr08	irgsp1_rep	five_prime_UTR	54266	54275	.	+	.	Parent=Os08t0100700-01
Chr08	irgsp1_rep	CDS	54276	54548	.	+	0	Parent=Os08t0100700-01
Chr08	irgsp1_rep	CDS	55010	55201	.	+	0	Parent=Os08t0100700-01
Chr08	irgsp1_rep	three_prime_UTR	55202	56075	.	+	.	Parent=Os08t0100700-01
Chr08	irgsp1_rep	three_prime_UTR	56178	56231	.	+	.	Parent=Os08t0100700-01
Chr08	irgsp1_rep	three_prime_UTR	56351	56485	.	+	.	Parent=Os08t0100700-01
Chr08	irgsp1_rep	three_prime_UTR	56569	58284	.	+	.	Parent=Os08t0100700-01
Chr08	irgsp1_rep	mRNA	58602	63302	.	+	.	ID=Os08t0100800-01;Name=Os08t0100800-01;Locus_id=Os08g0100800;Note=Homeodomain-like containing protein.;Transcript_evidence=AK106602 (DDBJ%2C Best hit);ORF_evidence=B7EBX1 (UniProt);InterPro=Protein of unknown function DUF3755 (IPR022228);NIAS_FLcDNA=002-112-C11;Expression=AK106602;TENOR=Os08t0100800-01;KEGG=Os08t0100800-01
Chr08	irgsp1_rep	five_prime_UTR	58602	58815	.	+	.	Parent=Os08t0100800-01
Chr08	irgsp1_rep	CDS	58816	59066	.	+	0	Parent=Os08t0100800-01
Chr08	irgsp1_rep	CDS	59152	59251	.	+	1	Parent=Os08t0100800-01
Chr08	irgsp1_rep	CDS	59632	59697	.	+	0	Parent=Os08t0100800-01
Chr08	irgsp1_rep	CDS	60035	60152	.	+	0	Parent=Os08t0100800-01
Chr08	irgsp1_rep	CDS	61091	61179	.	+	2	Parent=Os08t0100800-01
Chr08	irgsp1_rep	CDS	61279	61340	.	+	0	Parent=Os08t0100800-01
Chr08	irgsp1_rep	CDS	62281	62377	.	+	1	Parent=Os08t0100800-01
Chr08	irgsp1_rep	CDS	62834	62857	.	+	0	Parent=Os08t0100800-01
Chr08	irgsp1_rep	three_prime_UTR	62858	63302	.	+	.	Parent=Os08t0100800-01
Chr08	irgsp1_rep	mRNA	63575	67520	.	-	.	ID=Os08t0101000-01;Name=Os08t0101000-01;Locus_id=Os08g0101000;RAP-DB Gene Symbol Synonym(s)=IDEF1%2C OsLFL2%2C OsIDEF1;RAP-DB Gene Name Synonym(s)=IDE-BINDING FACTOR 1%2C B3 domain-containing protein IDEF1%2C Protein IRON DEFICIENCY-RESPONSIVE ELEMENT FACTOR 1%2C Transcription factor IDEF1%2C LEAFY COTYLEDON 2 and FUSCA 3-LIKE 2%2C IDE-binding factor 1%2C Iron Deficiency-responsive Element-binding Factor 1%2C iron deficiency-responsive cis-acting element binding factor 1;CGSNL Gene Symbol=IDEF1;CGSNL Gene Name=IDE-BINDING FACTOR 1;Oryzabase Gene Symbol Synonym(s)=OsLFL2%2C LFL2%2C OsIDEF1;Oryzabase Gene Name Synonym(s)=B3 domain-containing protein IDEF1%2C Protein IRON DEFICIENCY-RESPONSIVE ELEMENT FACTOR 1%2C Transcription factor IDEF1%2C LEAFY COTYLEDON 2 and FUSCA 3-LIKE 2%2C IDE-binding factor 1%2C Iron Deficiency-responsive Element-binding Factor 1%2C iron deficiency-responsive cis-acting element binding factor 1;Note=ABI3/VP1 transcription factor family protein%2C Regulation of iron-deficiency response and tolerance;Transcript_evidence=AK107456 (Genbank),BR000654 (Genbank);ORF_evidence=Q6Z1Z3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=002-128-C10;Manual Curation=January 18%2C 2010;Literature_PMID=18025467,19737364,20023399;Oryzabase=7177;Expression=AK107456;TENOR=Os08t0101000-01;KEGG=Os08t0101000-01
Chr08	irgsp1_rep	five_prime_UTR	67359	67520	.	-	.	Parent=Os08t0101000-01
Chr08	irgsp1_rep	CDS	67235	67358	.	-	0	Parent=Os08t0101000-01
Chr08	irgsp1_rep	CDS	66501	66857	.	-	2	Parent=Os08t0101000-01
Chr08	irgsp1_rep	CDS	65984	66102	.	-	2	Parent=Os08t0101000-01
Chr08	irgsp1_rep	CDS	65765	65887	.	-	0	Parent=Os08t0101000-01
Chr08	irgsp1_rep	CDS	65363	65455	.	-	0	Parent=Os08t0101000-01
Chr08	irgsp1_rep	CDS	65155	65255	.	-	0	Parent=Os08t0101000-01
Chr08	irgsp1_rep	CDS	64765	64811	.	-	1	Parent=Os08t0101000-01
Chr08	irgsp1_rep	CDS	64607	64683	.	-	2	Parent=Os08t0101000-01
Chr08	irgsp1_rep	CDS	64028	64075	.	-	0	Parent=Os08t0101000-01
Chr08	irgsp1_rep	three_prime_UTR	63575	64027	.	-	.	Parent=Os08t0101000-01
Chr08	irgsp1_rep	mRNA	71348	72715	.	-	.	ID=Os08t0101100-01;Name=Os08t0101100-01;Locus_id=Os08g0101100;Oryzabase Gene Symbol Synonym(s)=HMGB;Oryzabase Gene Name Synonym(s)=High mobility group protein B%2C High mobility group subgroup B protein;Note=High mobility group%2C HMG1/HMG2 domain containing protein.;Transcript_evidence=AK069900 (DDBJ%2C Best hit);ORF_evidence=B6T1S6 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=High mobility group%2C HMG1/HMG2 (IPR000910),High mobility group%2C superfamily (IPR009071);NIAS_FLcDNA=J023035E20;Oryzabase=19963;Expression=AK069900;TENOR=Os08t0101100-01;KEGG=Os08t0101100-01
Chr08	irgsp1_rep	five_prime_UTR	72677	72715	.	-	.	Parent=Os08t0101100-01
Chr08	irgsp1_rep	CDS	72579	72676	.	-	0	Parent=Os08t0101100-01
Chr08	irgsp1_rep	CDS	72405	72487	.	-	1	Parent=Os08t0101100-01
Chr08	irgsp1_rep	CDS	72193	72319	.	-	2	Parent=Os08t0101100-01
Chr08	irgsp1_rep	CDS	71935	72106	.	-	1	Parent=Os08t0101100-01
Chr08	irgsp1_rep	CDS	71713	71844	.	-	0	Parent=Os08t0101100-01
Chr08	irgsp1_rep	three_prime_UTR	71348	71712	.	-	.	Parent=Os08t0101100-01
Chr08	irgsp1_rep	mRNA	78198	84320	.	+	.	ID=Os08t0101400-01;Name=Os08t0101400-01;Locus_id=Os08g0101400;Note=Similar to cDNA clone:J023074F23%2C full insert sequence.;Transcript_evidence=AK242760 (DDBJ%2C Best hit);ORF_evidence=B9FYM4 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085);NIAS_FLcDNA=J090052D03;TENOR=Os08t0101400-01;KEGG=Os08t0101400-01
Chr08	irgsp1_rep	five_prime_UTR	78198	78303	.	+	.	Parent=Os08t0101400-01
Chr08	irgsp1_rep	CDS	78304	78384	.	+	0	Parent=Os08t0101400-01
Chr08	irgsp1_rep	CDS	78452	78649	.	+	0	Parent=Os08t0101400-01
Chr08	irgsp1_rep	CDS	78918	79016	.	+	0	Parent=Os08t0101400-01
Chr08	irgsp1_rep	CDS	79188	79276	.	+	0	Parent=Os08t0101400-01
Chr08	irgsp1_rep	CDS	81318	81434	.	+	1	Parent=Os08t0101400-01
Chr08	irgsp1_rep	CDS	81708	81813	.	+	1	Parent=Os08t0101400-01
Chr08	irgsp1_rep	CDS	81967	82051	.	+	0	Parent=Os08t0101400-01
Chr08	irgsp1_rep	CDS	82144	82253	.	+	2	Parent=Os08t0101400-01
Chr08	irgsp1_rep	CDS	82766	82896	.	+	0	Parent=Os08t0101400-01
Chr08	irgsp1_rep	CDS	83157	83253	.	+	1	Parent=Os08t0101400-01
Chr08	irgsp1_rep	CDS	83931	84224	.	+	0	Parent=Os08t0101400-01
Chr08	irgsp1_rep	three_prime_UTR	84225	84320	.	+	.	Parent=Os08t0101400-01
Chr08	irgsp1_rep	mRNA	86388	87854	.	+	.	ID=Os08t0101500-01;Name=Os08t0101500-01;Locus_id=Os08g0101500;RAP-DB Gene Symbol Synonym(s)=OsMOT1%3B1;RAP-DB Gene Name Synonym(s)=molybdate transporter 1%3B1;CGSNL Gene Symbol=SULTR5%3B2;CGSNL Gene Name=SULPHATE TRANSPORTER 5%3B2;Oryzabase Gene Symbol Synonym(s)=OsSultr5%3B2%2C OsSul5%3B2%2C Os-MOT1%3B1%2C OsMOT1%3B1%2C MOT1%3B1%2C qGMo8;Oryzabase Gene Name Synonym(s)=sulphate transporter 5%3B2%2C MOLYBDATE TRANSPORTER1%3B1%2C MOLYBDATE TRANSPORTER 1%3B1;Note=Molybdate transporter%2C Uptake and translocation of molybdate;Transcript_evidence=AK106547,AK103792;ORF_evidence=Q6Z1Z0;GO=Biological Process: molybdate ion transport (GO:0015689),Molecular Function: molybdate ion transmembrane transporter activity (GO:0015098);InterPro=Molybdate transporter 1/2 (IPR031563);NIAS_FLcDNA=002-108-F05,J033145N05;Manual Curation=October 24%2C 2018;Literature_PMID=30339276;Oryzabase=9328;TENOR=Os08t0101500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=mitochondrion (GO:0005739)
Chr08	irgsp1_rep	five_prime_UTR	86388	86398	.	+	.	Parent=Os08t0101500-01
Chr08	irgsp1_rep	CDS	86399	87766	.	+	0	Parent=Os08t0101500-01
Chr08	irgsp1_rep	three_prime_UTR	87767	87854	.	+	.	Parent=Os08t0101500-01
Chr08	irgsp1_rep	mRNA	87792	91868	.	-	.	ID=Os08t0101600-01;Name=Os08t0101600-01;Locus_id=Os08g0101600;CGSNL Gene Symbol=SEND1;CGSNL Gene Name=SINGLE-STRAND DNA ENDONUCLEASE 1;Oryzabase Gene Symbol Synonym(s)=OsSEND-1%2C OsSEND1;Oryzabase Gene Name Synonym(s)=single-strand DNA endonuclease-1;Note=Similar to Flap endonuclease GEN-like 2.;Transcript_evidence=AK102542 (DDBJ%2C Best hit);ORF_evidence=Q8W5R1 (UniProt);GO=Biological Process: DNA repair (GO:0006281),Molecular Function: nuclease activity (GO:0004518);InterPro=DNA repair protein (XPGC)/yeast Rad (IPR006084),XPG N-terminal (IPR006085);NIAS_FLcDNA=J033096K23;Oryzabase=13035;Expression=AK102542;TENOR=Os08t0101600-01;KEGG=Os08t0101600-01
Chr08	irgsp1_rep	five_prime_UTR	91801	91868	.	-	.	Parent=Os08t0101600-01
Chr08	irgsp1_rep	CDS	91733	91800	.	-	0	Parent=Os08t0101600-01
Chr08	irgsp1_rep	CDS	91478	91635	.	-	1	Parent=Os08t0101600-01
Chr08	irgsp1_rep	CDS	91283	91395	.	-	2	Parent=Os08t0101600-01
Chr08	irgsp1_rep	three_prime_UTR	91111	91282	.	-	.	Parent=Os08t0101600-01
Chr08	irgsp1_rep	three_prime_UTR	90995	91046	.	-	.	Parent=Os08t0101600-01
Chr08	irgsp1_rep	three_prime_UTR	90829	90901	.	-	.	Parent=Os08t0101600-01
Chr08	irgsp1_rep	three_prime_UTR	89713	90692	.	-	.	Parent=Os08t0101600-01
Chr08	irgsp1_rep	three_prime_UTR	89501	89600	.	-	.	Parent=Os08t0101600-01
Chr08	irgsp1_rep	three_prime_UTR	89196	89278	.	-	.	Parent=Os08t0101600-01
Chr08	irgsp1_rep	three_prime_UTR	88976	89076	.	-	.	Parent=Os08t0101600-01
Chr08	irgsp1_rep	three_prime_UTR	88773	88903	.	-	.	Parent=Os08t0101600-01
Chr08	irgsp1_rep	three_prime_UTR	87792	88508	.	-	.	Parent=Os08t0101600-01
Chr08	irgsp1_rep	mRNA	95831	96937	.	-	.	ID=Os08t0101700-01;Name=Os08t0101700-01;Locus_id=Os08g0101700;Note=Similar to CytoChrome b561 (Fragment).;Transcript_evidence=AK104211 (DDBJ%2C Best hit),AK061172 (DDBJ%2C Best hit),AK070102 (DDBJ%2C Best hit);ORF_evidence=B4FII4 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=CytoChrome b561%2C eukaryote (IPR004877),CytoChrome b561/ferric reductase transmembrane (IPR006593);NIAS_FLcDNA=006-305-D02,006-209-B08,J023047K10;Expression=AK104211;TENOR=Os08t0101700-01;KEGG=Os08t0101700-01
Chr08	irgsp1_rep	five_prime_UTR	96862	96937	.	-	.	Parent=Os08t0101700-01
Chr08	irgsp1_rep	CDS	96145	96861	.	-	0	Parent=Os08t0101700-01
Chr08	irgsp1_rep	three_prime_UTR	95831	96144	.	-	.	Parent=Os08t0101700-01
Chr08	irgsp1_rep	mRNA	102232	107380	.	+	.	ID=Os08t0101800-01;Name=Os08t0101800-01;Locus_id=Os08g0101800;Note=Protein of unknown function DUF821%2C CAP10-like family protein.;Transcript_evidence=AK120555 (DDBJ%2C Best hit);ORF_evidence=B6TEG9 (UniProt);InterPro=Lipopolysaccharide-modifying protein (IPR006598),Protein of unknown function DUF821%2C CAP10-like (IPR008539);NIAS_FLcDNA=J013130O10;Expression=AK120555;TENOR=Os08t0101800-01;KEGG=Os08t0101800-01
Chr08	irgsp1_rep	five_prime_UTR	102232	102600	.	+	.	Parent=Os08t0101800-01
Chr08	irgsp1_rep	CDS	102601	102936	.	+	0	Parent=Os08t0101800-01
Chr08	irgsp1_rep	CDS	105607	107010	.	+	0	Parent=Os08t0101800-01
Chr08	irgsp1_rep	three_prime_UTR	107011	107380	.	+	.	Parent=Os08t0101800-01
Chr08	irgsp1_rep	mRNA	108447	109106	.	+	.	ID=Os08t0101900-00;Name=Os08t0101900-00;Locus_id=Os08g0101900;CGSNL Gene Symbol=CASP2;CGSNL Gene Name=CASPARIAN STRIP DOMAIN PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsCASP2;Oryzabase Gene Name Synonym(s)=Casparian strip domain protein 2;Note=UPF0497 membrane protein 2.;Transcript_evidence=Q6Z1Y7 (UniProt);ORF_evidence=A2YQB8 (UniProt);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup (IPR006459),Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);Oryzabase=23336;TENOR=Os08t0101900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	108447	108802	.	+	0	Parent=Os08t0101900-00
Chr08	irgsp1_rep	CDS	108890	109106	.	+	1	Parent=Os08t0101900-00
Chr08	irgsp1_rep	mRNA	109493	110375	.	-	.	ID=Os08t0102000-01;Name=Os08t0102000-01;Locus_id=Os08g0102000;RAP-DB Gene Symbol Synonym(s)=OsSNAT2%2C SNAT2;RAP-DB Gene Name Synonym(s)=SEROTONIN N-ACETYLTRANSFERASE-2%2C serotonin N-acetyltransferase-2;CGSNL Gene Symbol=SNAT2;CGSNL Gene Name=SEROTONIN N-ACETYLTRANSFERASE-2;Oryzabase Gene Symbol Synonym(s)=OsSNAT2;Oryzabase Gene Name Synonym(s)=serotonin N-acetyltransferase-2%2C serotonin N-acetyltransferase 2;Note=Serotonin N-acetyltransferase%2C Melatonin synthesis;Transcript_evidence=AK068156;ORF_evidence=Q6Z1Y6;GO=Molecular Function: N-acetyltransferase activity (GO:0008080);InterPro=Acyl-CoA N-acyltransferase (IPR016181),GNAT domain (IPR000182);NIAS_FLcDNA=J013130K21;Manual Curation=June 9%2C 2017;Literature_PMID=27121038;Oryzabase=21089;Expression=AK068156;TENOR=Os08t0102000-01;KEGG=Os08t0102000-01 (EC:2.3.1.87);Subcellular location=cytoplasm (GO:0005737), chloroplast (GO:0009507)
Chr08	irgsp1_rep	five_prime_UTR	110349	110375	.	-	.	Parent=Os08t0102000-01
Chr08	irgsp1_rep	CDS	109746	110348	.	-	0	Parent=Os08t0102000-01
Chr08	irgsp1_rep	three_prime_UTR	109493	109745	.	-	.	Parent=Os08t0102000-01
Chr08	irgsp1_rep	mRNA	114259	114402	.	-	.	ID=Os08t0102050-00;Name=Os08t0102050-00;Locus_id=Os08g0102050;Note=Conserved hypothetical protein.;Transcript_evidence=AY178579 (DDBJ);ORF_evidence=Q6Z1Y5 (UniProt);TENOR=Os08t0102050-00
Chr08	irgsp1_rep	CDS	114259	114402	.	-	0	Parent=Os08t0102050-00
Chr08	irgsp1_rep	mRNA	115306	120980	.	-	.	ID=Os08t0102100-01;Name=Os08t0102100-01;Locus_id=Os08g0102100;Note=Nicastrin family protein.;Transcript_evidence=AK064841 (DDBJ%2C Best hit);ORF_evidence=NP_001147070.1 (RefSeq);GO=Biological Process: regulation of signal transduction (GO:0009966),Biological Process: protein processing (GO:0016485),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021);InterPro=Nicastrin (IPR008710),Nicalin (IPR016574),EF-Hand 1%2C calcium-binding site (IPR018247);NIAS_FLcDNA=J013000G03;Expression=AK064841;TENOR=Os08t0102100-01;KEGG=Os08t0102100-01
Chr08	irgsp1_rep	five_prime_UTR	120927	120980	.	-	.	Parent=Os08t0102100-01
Chr08	irgsp1_rep	CDS	120650	120926	.	-	0	Parent=Os08t0102100-01
Chr08	irgsp1_rep	CDS	120243	120388	.	-	2	Parent=Os08t0102100-01
Chr08	irgsp1_rep	CDS	119632	119735	.	-	0	Parent=Os08t0102100-01
Chr08	irgsp1_rep	CDS	119443	119509	.	-	1	Parent=Os08t0102100-01
Chr08	irgsp1_rep	CDS	119123	119215	.	-	0	Parent=Os08t0102100-01
Chr08	irgsp1_rep	CDS	118879	119043	.	-	0	Parent=Os08t0102100-01
Chr08	irgsp1_rep	CDS	118641	118781	.	-	0	Parent=Os08t0102100-01
Chr08	irgsp1_rep	CDS	118472	118549	.	-	0	Parent=Os08t0102100-01
Chr08	irgsp1_rep	CDS	117334	117446	.	-	0	Parent=Os08t0102100-01
Chr08	irgsp1_rep	CDS	117183	117243	.	-	1	Parent=Os08t0102100-01
Chr08	irgsp1_rep	CDS	116393	116560	.	-	0	Parent=Os08t0102100-01
Chr08	irgsp1_rep	CDS	116200	116301	.	-	0	Parent=Os08t0102100-01
Chr08	irgsp1_rep	CDS	115643	115732	.	-	0	Parent=Os08t0102100-01
Chr08	irgsp1_rep	CDS	115499	115561	.	-	0	Parent=Os08t0102100-01
Chr08	irgsp1_rep	three_prime_UTR	115306	115498	.	-	.	Parent=Os08t0102100-01
Chr08	irgsp1_rep	mRNA	120633	125645	.	+	.	ID=Os08t0102250-00;Name=Os08t0102250-00;Locus_id=Os08g0102250;Note=Similar to H0913C04.5 protein.;Transcript_evidence=AK374434 (DDBJ);ORF_evidence=Q259T9 (UniProt);TENOR=Os08t0102250-00
Chr08	irgsp1_rep	five_prime_UTR	120633	120830	.	+	.	Parent=Os08t0102250-00
Chr08	irgsp1_rep	five_prime_UTR	125425	125438	.	+	.	Parent=Os08t0102250-00
Chr08	irgsp1_rep	CDS	125439	125645	.	+	0	Parent=Os08t0102250-00
Chr08	irgsp1_rep	mRNA	138407	139410	.	+	.	ID=Os08t0102400-00;Name=Os08t0102400-00;Locus_id=Os08g0102400;Oryzabase Gene Symbol Synonym(s)=OsOFP28%2C OsOFP25;Oryzabase Gene Name Synonym(s)=OVATE family protein 28%2C ovate family protein 25%2C OVATE-domain containing protein 25;Note=Hypothetical conserved gene.;Transcript_evidence=CT835920 (DDBJ%2C Best hit);ORF_evidence=Q69U68 (UniProt);InterPro=Domain of unknown function DUF623 (IPR006458);Oryzabase=18324;TENOR=Os08t0102400-00;KEGG=Os08t0102400-00
Chr08	irgsp1_rep	five_prime_UTR	138407	138455	.	+	.	Parent=Os08t0102400-00
Chr08	irgsp1_rep	CDS	138456	139271	.	+	0	Parent=Os08t0102400-00
Chr08	irgsp1_rep	three_prime_UTR	139272	139410	.	+	.	Parent=Os08t0102400-00
Chr08	irgsp1_rep	mRNA	151934	153452	.	-	.	ID=Os08t0102700-01;Name=Os08t0102700-01;Locus_id=Os08g0102700;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK067526 (DDBJ%2C Best hit);ORF_evidence=B6TRZ2 (UniProt);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=J013109O20;Expression=AK067526;TENOR=Os08t0102700-01;KEGG=Os08t0102700-01
Chr08	irgsp1_rep	five_prime_UTR	153109	153452	.	-	.	Parent=Os08t0102700-01
Chr08	irgsp1_rep	CDS	152425	153108	.	-	0	Parent=Os08t0102700-01
Chr08	irgsp1_rep	three_prime_UTR	151934	152424	.	-	.	Parent=Os08t0102700-01
Chr08	irgsp1_rep	mRNA	151990	153374	.	-	.	ID=Os08t0102700-02;Name=Os08t0102700-02;Locus_id=Os08g0102700;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK099239 (DDBJ%2C Best hit);ORF_evidence=B6TRZ2 (UniProt);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=J013116B02;TENOR=Os08t0102700-02
Chr08	irgsp1_rep	five_prime_UTR	153109	153374	.	-	.	Parent=Os08t0102700-02
Chr08	irgsp1_rep	CDS	152425	153108	.	-	0	Parent=Os08t0102700-02
Chr08	irgsp1_rep	three_prime_UTR	151990	152424	.	-	.	Parent=Os08t0102700-02
Chr08	irgsp1_rep	mRNA	151908	153351	.	-	.	ID=Os08t0102700-03;Name=Os08t0102700-03;Locus_id=Os08g0102700;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK072003 (DDBJ%2C Best hit);ORF_evidence=B6TRZ2 (UniProt);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=J013097H23;TENOR=Os08t0102700-03
Chr08	irgsp1_rep	five_prime_UTR	153109	153351	.	-	.	Parent=Os08t0102700-03
Chr08	irgsp1_rep	CDS	152425	153108	.	-	0	Parent=Os08t0102700-03
Chr08	irgsp1_rep	three_prime_UTR	151908	152424	.	-	.	Parent=Os08t0102700-03
Chr08	irgsp1_rep	mRNA	151908	153230	.	-	.	ID=Os08t0102700-04;Name=Os08t0102700-04;Locus_id=Os08g0102700;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK061780 (DDBJ%2C Best hit),AK061430 (DDBJ%2C Best hit),AK104488 (DDBJ%2C Best hit);ORF_evidence=B6TRZ2 (UniProt);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=001-039-D12,006-306-H04,006-302-B05;Expression=AK061430;TENOR=Os08t0102700-04;KEGG=Os08t0102700-04;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	153109	153230	.	-	.	Parent=Os08t0102700-04
Chr08	irgsp1_rep	CDS	152425	153108	.	-	0	Parent=Os08t0102700-04
Chr08	irgsp1_rep	three_prime_UTR	151908	152424	.	-	.	Parent=Os08t0102700-04
Chr08	irgsp1_rep	mRNA	151908	153118	.	-	.	ID=Os08t0102700-05;Name=Os08t0102700-05;Locus_id=Os08g0102700;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK061546 (DDBJ%2C Best hit);ORF_evidence=B6TRZ2 (UniProt);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=006-311-A05;TENOR=Os08t0102700-05
Chr08	irgsp1_rep	five_prime_UTR	153109	153118	.	-	.	Parent=Os08t0102700-05
Chr08	irgsp1_rep	CDS	152425	153108	.	-	0	Parent=Os08t0102700-05
Chr08	irgsp1_rep	three_prime_UTR	151908	152424	.	-	.	Parent=Os08t0102700-05
Chr08	irgsp1_rep	mRNA	159200	159833	.	+	.	ID=Os08t0102800-01;Name=Os08t0102800-01;Locus_id=Os08g0102800;Note=Conserved hypothetical protein.;Transcript_evidence=AK120363 (DDBJ%2C Best hit);ORF_evidence=NP_001143658.1 (RefSeq);NIAS_FLcDNA=J013068G21;Expression=AK120363;TENOR=Os08t0102800-01;KEGG=Os08t0102800-01
Chr08	irgsp1_rep	five_prime_UTR	159200	159201	.	+	.	Parent=Os08t0102800-01
Chr08	irgsp1_rep	CDS	159202	159672	.	+	0	Parent=Os08t0102800-01
Chr08	irgsp1_rep	three_prime_UTR	159673	159833	.	+	.	Parent=Os08t0102800-01
Chr08	irgsp1_rep	mRNA	167960	168583	.	+	.	ID=Os08t0102900-00;Name=Os08t0102900-00;Locus_id=Os08g0102900;Oryzabase Gene Symbol Synonym(s)=OsVQ32;Oryzabase Gene Name Synonym(s)=VQ motif-containing protein 32;Note=VQ domain containing protein.;Transcript_evidence=EU948725 (DDBJ);ORF_evidence=Q69U60 (UniProt);InterPro=VQ (IPR008889);Oryzabase=13648;TENOR=Os08t0102900-00
Chr08	irgsp1_rep	CDS	167960	168583	.	+	0	Parent=Os08t0102900-00
Chr08	irgsp1_rep	mRNA	172122	179389	.	-	.	ID=Os08t0103000-01;Name=Os08t0103000-01;Locus_id=Os08g0103000;CGSNL Gene Symbol=ACTPK5;CGSNL Gene Name=ACT DOMAIN CONTAINING PROTEIN KINASE 5;Oryzabase Gene Symbol Synonym(s)=OsACTPK5;Oryzabase Gene Name Synonym(s)=ACT domain containing protein kinase 5;Note=Similar to serine/threonine-protein kinase CTR1.;Transcript_evidence=AK067246 (DDBJ%2C Best hit);ORF_evidence=NP_001152032.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: amino acid binding (GO:0016597),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Amino acid-binding ACT (IPR002912),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J013097H21;Oryzabase=22318;TENOR=Os08t0103000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	179388	179389	.	-	.	Parent=Os08t0103000-01
Chr08	irgsp1_rep	CDS	179288	179387	.	-	0	Parent=Os08t0103000-01
Chr08	irgsp1_rep	CDS	178843	179050	.	-	2	Parent=Os08t0103000-01
Chr08	irgsp1_rep	CDS	176725	176794	.	-	1	Parent=Os08t0103000-01
Chr08	irgsp1_rep	CDS	176518	176628	.	-	0	Parent=Os08t0103000-01
Chr08	irgsp1_rep	CDS	176312	176362	.	-	0	Parent=Os08t0103000-01
Chr08	irgsp1_rep	CDS	175976	176121	.	-	0	Parent=Os08t0103000-01
Chr08	irgsp1_rep	CDS	175564	175675	.	-	1	Parent=Os08t0103000-01
Chr08	irgsp1_rep	CDS	175485	175490	.	-	0	Parent=Os08t0103000-01
Chr08	irgsp1_rep	three_prime_UTR	175420	175484	.	-	.	Parent=Os08t0103000-01
Chr08	irgsp1_rep	three_prime_UTR	174849	175024	.	-	.	Parent=Os08t0103000-01
Chr08	irgsp1_rep	three_prime_UTR	174271	174366	.	-	.	Parent=Os08t0103000-01
Chr08	irgsp1_rep	three_prime_UTR	173321	173378	.	-	.	Parent=Os08t0103000-01
Chr08	irgsp1_rep	three_prime_UTR	173177	173227	.	-	.	Parent=Os08t0103000-01
Chr08	irgsp1_rep	three_prime_UTR	172746	172886	.	-	.	Parent=Os08t0103000-01
Chr08	irgsp1_rep	three_prime_UTR	172122	172498	.	-	.	Parent=Os08t0103000-01
Chr08	irgsp1_rep	mRNA	172099	175027	.	-	.	ID=Os08t0103000-02;Name=Os08t0103000-02;Locus_id=Os08g0103000;CGSNL Gene Symbol=ACTPK5;CGSNL Gene Name=ACT DOMAIN CONTAINING PROTEIN KINASE 5;Oryzabase Gene Symbol Synonym(s)=OsACTPK5;Oryzabase Gene Name Synonym(s)=ACT domain containing protein kinase 5;Note=Similar to serine/threonine-protein kinase CTR1.;Transcript_evidence=AK061938 (DDBJ%2C Best hit);ORF_evidence=Q259N0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-042-D07;Oryzabase=22318;Expression=AK061938;TENOR=Os08t0103000-02;KEGG=Os08t0103000-02
Chr08	irgsp1_rep	five_prime_UTR	175026	175027	.	-	.	Parent=Os08t0103000-02
Chr08	irgsp1_rep	CDS	174849	175025	.	-	0	Parent=Os08t0103000-02
Chr08	irgsp1_rep	CDS	174271	174366	.	-	0	Parent=Os08t0103000-02
Chr08	irgsp1_rep	CDS	173332	173412	.	-	0	Parent=Os08t0103000-02
Chr08	irgsp1_rep	CDS	173177	173227	.	-	0	Parent=Os08t0103000-02
Chr08	irgsp1_rep	CDS	172746	172886	.	-	0	Parent=Os08t0103000-02
Chr08	irgsp1_rep	CDS	172436	172498	.	-	0	Parent=Os08t0103000-02
Chr08	irgsp1_rep	three_prime_UTR	172099	172435	.	-	.	Parent=Os08t0103000-02
Chr08	irgsp1_rep	mRNA	177153	182546	.	+	.	ID=Os08t0103100-01;Name=Os08t0103100-01;Locus_id=Os08g0103100;Note=Hypothetical protein.;Transcript_evidence=AK067064 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J013090H15;TENOR=Os08t0103100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	177153	177503	.	+	.	Parent=Os08t0103100-01
Chr08	irgsp1_rep	five_prime_UTR	177736	177875	.	+	.	Parent=Os08t0103100-01
Chr08	irgsp1_rep	five_prime_UTR	177999	178555	.	+	.	Parent=Os08t0103100-01
Chr08	irgsp1_rep	CDS	178556	178681	.	+	0	Parent=Os08t0103100-01
Chr08	irgsp1_rep	CDS	181949	182203	.	+	0	Parent=Os08t0103100-01
Chr08	irgsp1_rep	three_prime_UTR	182204	182546	.	+	.	Parent=Os08t0103100-01
Chr08	irgsp1_rep	mRNA	187111	191782	.	+	.	ID=Os08t0103300-01;Name=Os08t0103300-01;Locus_id=Os08g0103300;Oryzabase Gene Symbol Synonym(s)=OsTLP2%2C OsTLP2a%2C OsTLP2b%2C OsTLP12%2C OsFbox402%2C Os_F0479;Oryzabase Gene Name Synonym(s)=tubby-like protein 2%2C tubby-like protein 12%2C F-box protein 402;Note=Similar to Tubby-like protein 3.;Transcript_evidence=AK120706 (DDBJ%2C Best hit),AK100078 (DDBJ%2C Best hit);ORF_evidence=Q69U54 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Tubby%2C C-terminal (IPR000007),F-box domain%2C cyclin-like (IPR001810),Tubby%2C C-terminal%2C conserved site (IPR018066),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023001B21,J023001J17;Oryzabase=14704;TENOR=Os08t0103300-01
Chr08	irgsp1_rep	five_prime_UTR	187111	187460	.	+	.	Parent=Os08t0103300-01
Chr08	irgsp1_rep	five_prime_UTR	188173	188227	.	+	.	Parent=Os08t0103300-01
Chr08	irgsp1_rep	five_prime_UTR	188324	188407	.	+	.	Parent=Os08t0103300-01
Chr08	irgsp1_rep	CDS	188408	188773	.	+	0	Parent=Os08t0103300-01
Chr08	irgsp1_rep	CDS	189260	189347	.	+	0	Parent=Os08t0103300-01
Chr08	irgsp1_rep	CDS	189509	189641	.	+	2	Parent=Os08t0103300-01
Chr08	irgsp1_rep	CDS	189741	190509	.	+	1	Parent=Os08t0103300-01
Chr08	irgsp1_rep	three_prime_UTR	190510	191782	.	+	.	Parent=Os08t0103300-01
Chr08	irgsp1_rep	mRNA	189278	190770	.	+	.	ID=Os08t0103300-02;Name=Os08t0103300-02;Locus_id=Os08g0103300;Oryzabase Gene Symbol Synonym(s)=OsTLP2%2C OsTLP2a%2C OsTLP2b%2C OsTLP12%2C OsFbox402%2C Os_F0479;Oryzabase Gene Name Synonym(s)=tubby-like protein 2%2C tubby-like protein 12%2C F-box protein 402;Note=Similar to Tubby-like F-box protein 12.;Transcript_evidence=AK104486 (DDBJ%2C Best hit),AK060879 (DDBJ%2C Best hit);ORF_evidence=Q69U54 (UniProt);InterPro=Tubby%2C C-terminal (IPR000007),Tubby%2C C-terminal%2C conserved site (IPR018066);NIAS_FLcDNA=006-302-A09,001-035-A08;Oryzabase=14704;Expression=AK104486;TENOR=Os08t0103300-02;KEGG=Os08t0103300-02
Chr08	irgsp1_rep	CDS	189278	189347	.	+	0	Parent=Os08t0103300-02
Chr08	irgsp1_rep	CDS	189509	189641	.	+	2	Parent=Os08t0103300-02
Chr08	irgsp1_rep	CDS	189741	190509	.	+	1	Parent=Os08t0103300-02
Chr08	irgsp1_rep	three_prime_UTR	190510	190770	.	+	.	Parent=Os08t0103300-02
Chr08	irgsp1_rep	mRNA	190890	194555	.	-	.	ID=Os08t0103400-00;Name=Os08t0103400-00;Locus_id=Os08g0103400;Note=Similar to palmitoyltransferase ZDHHC9.;Transcript_evidence=AK331298 (DDBJ);ORF_evidence=B6TJT8 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C DHHC-type%2C palmitoyltransferase (IPR001594);TENOR=Os08t0103400-00;KEGG=Os08t0103400-00
Chr08	irgsp1_rep	five_prime_UTR	194506	194555	.	-	.	Parent=Os08t0103400-00
Chr08	irgsp1_rep	CDS	194455	194505	.	-	0	Parent=Os08t0103400-00
Chr08	irgsp1_rep	CDS	193503	193688	.	-	0	Parent=Os08t0103400-00
Chr08	irgsp1_rep	CDS	192413	192694	.	-	0	Parent=Os08t0103400-00
Chr08	irgsp1_rep	CDS	192054	192287	.	-	0	Parent=Os08t0103400-00
Chr08	irgsp1_rep	CDS	191246	191731	.	-	0	Parent=Os08t0103400-00
Chr08	irgsp1_rep	three_prime_UTR	190890	191245	.	-	.	Parent=Os08t0103400-00
Chr08	irgsp1_rep	mRNA	195890	200315	.	-	.	ID=Os08t0103500-01;Name=Os08t0103500-01;Locus_id=Os08g0103500;Note=PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain domain containing protein.;Transcript_evidence=AK067883 (DDBJ%2C Best hit);ORF_evidence=B4FNL7 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: intracellular signal transduction (GO:0035556),Molecular Function: phospholipase C activity (GO:0004629),Molecular Function: phosphoric diester hydrolase activity (GO:0008081);InterPro=Phospholipase C%2C phosphatidylinositol-specific %2C X domain (IPR000909),PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain (IPR017946);NIAS_FLcDNA=J013124M22;TENOR=Os08t0103500-01
Chr08	irgsp1_rep	five_prime_UTR	200227	200315	.	-	.	Parent=Os08t0103500-01
Chr08	irgsp1_rep	CDS	200038	200226	.	-	0	Parent=Os08t0103500-01
Chr08	irgsp1_rep	CDS	199812	199949	.	-	0	Parent=Os08t0103500-01
Chr08	irgsp1_rep	CDS	197716	197814	.	-	0	Parent=Os08t0103500-01
Chr08	irgsp1_rep	CDS	197308	197608	.	-	0	Parent=Os08t0103500-01
Chr08	irgsp1_rep	CDS	197001	197224	.	-	2	Parent=Os08t0103500-01
Chr08	irgsp1_rep	CDS	196820	196906	.	-	0	Parent=Os08t0103500-01
Chr08	irgsp1_rep	CDS	196223	196420	.	-	0	Parent=Os08t0103500-01
Chr08	irgsp1_rep	three_prime_UTR	195890	196222	.	-	.	Parent=Os08t0103500-01
Chr08	irgsp1_rep	mRNA	195908	200234	.	-	.	ID=Os08t0103500-02;Name=Os08t0103500-02;Locus_id=Os08g0103500;Note=PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain domain containing protein.;Transcript_evidence=AK060348 (DDBJ%2C Best hit);ORF_evidence=B4FNL7 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: intracellular signal transduction (GO:0035556),Molecular Function: phospholipase C activity (GO:0004629),Molecular Function: phosphoric diester hydrolase activity (GO:0008081);InterPro=Phospholipase C%2C phosphatidylinositol-specific %2C X domain (IPR000909),PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain (IPR017946);NIAS_FLcDNA=001-008-F04;TENOR=Os08t0103500-02
Chr08	irgsp1_rep	five_prime_UTR	200227	200234	.	-	.	Parent=Os08t0103500-02
Chr08	irgsp1_rep	CDS	200038	200226	.	-	0	Parent=Os08t0103500-02
Chr08	irgsp1_rep	CDS	199812	199949	.	-	0	Parent=Os08t0103500-02
Chr08	irgsp1_rep	CDS	197716	197814	.	-	0	Parent=Os08t0103500-02
Chr08	irgsp1_rep	CDS	197308	197608	.	-	0	Parent=Os08t0103500-02
Chr08	irgsp1_rep	CDS	197001	197224	.	-	2	Parent=Os08t0103500-02
Chr08	irgsp1_rep	CDS	196820	196906	.	-	0	Parent=Os08t0103500-02
Chr08	irgsp1_rep	CDS	196223	196420	.	-	0	Parent=Os08t0103500-02
Chr08	irgsp1_rep	three_prime_UTR	195908	196222	.	-	.	Parent=Os08t0103500-02
Chr08	irgsp1_rep	mRNA	201367	203842	.	-	.	ID=Os08t0103600-01;Name=Os08t0103600-01;Locus_id=Os08g0103600;Note=BTB domain containing protein.;Transcript_evidence=AK067168 (DDBJ%2C Best hit);ORF_evidence=B6TM03 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069);NIAS_FLcDNA=J013095L15;Expression=AK067168;TENOR=Os08t0103600-01;KEGG=Os08t0103600-01
Chr08	irgsp1_rep	five_prime_UTR	203828	203842	.	-	.	Parent=Os08t0103600-01
Chr08	irgsp1_rep	CDS	203407	203827	.	-	0	Parent=Os08t0103600-01
Chr08	irgsp1_rep	CDS	202533	202650	.	-	2	Parent=Os08t0103600-01
Chr08	irgsp1_rep	CDS	201668	202277	.	-	1	Parent=Os08t0103600-01
Chr08	irgsp1_rep	three_prime_UTR	201367	201667	.	-	.	Parent=Os08t0103600-01
Chr08	irgsp1_rep	mRNA	203433	211473	.	+	.	ID=Os08t0103700-01;Name=Os08t0103700-01;Locus_id=Os08g0103700;Note=Non-protein coding transcript.;Transcript_evidence=AK071064 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023080N04;TENOR=Os08t0103700-01
Chr08	irgsp1_rep	exon	203433	203820	.	+	.	Parent=Os08t0103700-01
Chr08	irgsp1_rep	exon	210940	211473	.	+	.	Parent=Os08t0103700-01
Chr08	irgsp1_rep	mRNA	210422	212411	.	-	.	ID=Os08t0103900-01;Name=Os08t0103900-01;Locus_id=Os08g0103900;RAP-DB Gene Symbol Synonym(s)=NAC31%2C OsSWN3;RAP-DB Gene Name Synonym(s)=secondary wall NAC transcription factor 3%2C secondary wall-associated NAC domain protein 3;CGSNL Gene Symbol=NAC31;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 31;Oryzabase Gene Symbol Synonym(s)=ONAC031%2C ONAC31%2C OsSWN3;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 031%2C NAC domain-containing protein 31%2C secondary wall NAC transcription factor 3%2C secondary wall-associated NAC 3%2C SECONDARY WALL NAC DOMAIN PROTEIN 3;Note=NAC transcription factor%2C Regulation of cellulose synthesis%2C Regulation of secondary wall biosynthesis;Transcript_evidence=AK110611;ORF_evidence=Q69U51;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=NAC domain superfamily (IPR036093),NAC domain (IPR003441);NIAS_FLcDNA=002-168-H04;Manual Curation=October 20%2C 2020;Literature_PMID=26002868,21908441;Oryzabase=11476;Expression=AK110611;TENOR=Os08t0103900-01;KEGG=Os08t0103900-01;Subcellular location=nucleus (GO:0005634)
Chr08	irgsp1_rep	five_prime_UTR	212093	212411	.	-	.	Parent=Os08t0103900-01
Chr08	irgsp1_rep	CDS	211912	212092	.	-	0	Parent=Os08t0103900-01
Chr08	irgsp1_rep	CDS	211500	211787	.	-	2	Parent=Os08t0103900-01
Chr08	irgsp1_rep	CDS	210881	211386	.	-	2	Parent=Os08t0103900-01
Chr08	irgsp1_rep	three_prime_UTR	210422	210880	.	-	.	Parent=Os08t0103900-01
Chr08	irgsp1_rep	mRNA	222487	225257	.	-	.	ID=Os08t0104100-01;Name=Os08t0104100-01;Locus_id=Os08g0104100;Note=Similar to Transmembrane protein 18.;Transcript_evidence=AK063887 (DDBJ%2C Best hit);ORF_evidence=B6TMF2 (UniProt);NIAS_FLcDNA=001-122-G02;Expression=AK063887;TENOR=Os08t0104100-01;KEGG=Os08t0104100-01
Chr08	irgsp1_rep	five_prime_UTR	225189	225257	.	-	.	Parent=Os08t0104100-01
Chr08	irgsp1_rep	CDS	224997	225188	.	-	0	Parent=Os08t0104100-01
Chr08	irgsp1_rep	CDS	223836	223941	.	-	0	Parent=Os08t0104100-01
Chr08	irgsp1_rep	CDS	223053	223201	.	-	2	Parent=Os08t0104100-01
Chr08	irgsp1_rep	CDS	222873	222968	.	-	0	Parent=Os08t0104100-01
Chr08	irgsp1_rep	three_prime_UTR	222487	222872	.	-	.	Parent=Os08t0104100-01
Chr08	irgsp1_rep	mRNA	222517	225251	.	-	.	ID=Os08t0104100-02;Name=Os08t0104100-02;Locus_id=Os08g0104100;Note=Similar to transmembrane protein 18.;Transcript_evidence=AK072948 (DDBJ%2C Best hit);ORF_evidence=B6TMF2 (UniProt);NIAS_FLcDNA=J023143E24;Expression=AK072948;TENOR=Os08t0104100-02;KEGG=Os08t0104100-02
Chr08	irgsp1_rep	five_prime_UTR	225189	225251	.	-	.	Parent=Os08t0104100-02
Chr08	irgsp1_rep	CDS	225102	225188	.	-	0	Parent=Os08t0104100-02
Chr08	irgsp1_rep	CDS	224893	225042	.	-	0	Parent=Os08t0104100-02
Chr08	irgsp1_rep	three_prime_UTR	222517	224892	.	-	.	Parent=Os08t0104100-02
Chr08	irgsp1_rep	mRNA	222484	225233	.	-	.	ID=Os08t0104100-03;Name=Os08t0104100-03;Locus_id=Os08g0104100;Note=Similar to Transmembrane protein 18.;Transcript_evidence=AK061550 (DDBJ%2C Best hit);ORF_evidence=B6TMF2 (UniProt);NIAS_FLcDNA=006-311-A11;TENOR=Os08t0104100-03
Chr08	irgsp1_rep	five_prime_UTR	225189	225233	.	-	.	Parent=Os08t0104100-03
Chr08	irgsp1_rep	CDS	224997	225188	.	-	0	Parent=Os08t0104100-03
Chr08	irgsp1_rep	CDS	223836	223941	.	-	0	Parent=Os08t0104100-03
Chr08	irgsp1_rep	CDS	223053	223201	.	-	2	Parent=Os08t0104100-03
Chr08	irgsp1_rep	CDS	222873	222968	.	-	0	Parent=Os08t0104100-03
Chr08	irgsp1_rep	three_prime_UTR	222484	222872	.	-	.	Parent=Os08t0104100-03
Chr08	irgsp1_rep	mRNA	228236	232374	.	+	.	ID=Os08t0104300-01;Name=Os08t0104300-01;Locus_id=Os08g0104300;Oryzabase Gene Symbol Synonym(s)=OsRMR2;Oryzabase Gene Name Synonym(s)=receptor homology region-transmembrane domain-RING-H2 (RMR) protein 2%2C ReMembR-H2 Protein 2;Note=Similar to RING finger protein 13.;Transcript_evidence=AK066589 (DDBJ%2C Best hit);ORF_evidence=NP_001147957.1 (RefSeq);InterPro=Protease-associated domain%2C PA (IPR003137);NIAS_FLcDNA=J013073A02;Oryzabase=15536;Expression=AK066589;TENOR=Os08t0104300-01;KEGG=Os08t0104300-01
Chr08	irgsp1_rep	five_prime_UTR	228236	228413	.	+	.	Parent=Os08t0104300-01
Chr08	irgsp1_rep	five_prime_UTR	228920	228935	.	+	.	Parent=Os08t0104300-01
Chr08	irgsp1_rep	CDS	228936	229176	.	+	0	Parent=Os08t0104300-01
Chr08	irgsp1_rep	CDS	229571	229875	.	+	2	Parent=Os08t0104300-01
Chr08	irgsp1_rep	three_prime_UTR	229876	230551	.	+	.	Parent=Os08t0104300-01
Chr08	irgsp1_rep	three_prime_UTR	231120	232374	.	+	.	Parent=Os08t0104300-01
Chr08	irgsp1_rep	mRNA	228237	232315	.	+	.	ID=Os08t0104300-02;Name=Os08t0104300-02;Locus_id=Os08g0104300;Oryzabase Gene Symbol Synonym(s)=OsRMR2;Oryzabase Gene Name Synonym(s)=receptor homology region-transmembrane domain-RING-H2 (RMR) protein 2%2C ReMembR-H2 Protein 2;Note=Similar to RING finger family protein.;Transcript_evidence=AK101543 (DDBJ%2C Best hit);ORF_evidence=NP_001147957.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Protease-associated domain%2C PA (IPR003137),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J033048I07;Oryzabase=15536;Expression=AK101543;TENOR=Os08t0104300-02;KEGG=Os08t0104300-02
Chr08	irgsp1_rep	five_prime_UTR	228237	228413	.	+	.	Parent=Os08t0104300-02
Chr08	irgsp1_rep	five_prime_UTR	228920	228935	.	+	.	Parent=Os08t0104300-02
Chr08	irgsp1_rep	CDS	228936	229176	.	+	0	Parent=Os08t0104300-02
Chr08	irgsp1_rep	CDS	229571	229795	.	+	2	Parent=Os08t0104300-02
Chr08	irgsp1_rep	CDS	230147	230551	.	+	2	Parent=Os08t0104300-02
Chr08	irgsp1_rep	CDS	231120	231736	.	+	2	Parent=Os08t0104300-02
Chr08	irgsp1_rep	three_prime_UTR	231737	232315	.	+	.	Parent=Os08t0104300-02
Chr08	irgsp1_rep	mRNA	233816	234464	.	-	.	ID=Os08t0104400-01;Name=Os08t0104400-01;Locus_id=Os08g0104400;Note=Conserved hypothetical protein.;Transcript_evidence=AK064224 (DDBJ%2C Best hit);ORF_evidence=B8B9Y8 (UniProt);NIAS_FLcDNA=002-104-G04;Expression=AK064224;TENOR=Os08t0104400-01;KEGG=Os08t0104400-01
Chr08	irgsp1_rep	five_prime_UTR	234424	234464	.	-	.	Parent=Os08t0104400-01
Chr08	irgsp1_rep	CDS	234133	234423	.	-	0	Parent=Os08t0104400-01
Chr08	irgsp1_rep	three_prime_UTR	233816	234132	.	-	.	Parent=Os08t0104400-01
Chr08	irgsp1_rep	mRNA	241783	242628	.	-	.	ID=Os08t0104600-02;Name=Os08t0104600-02;Locus_id=Os08g0104600;RAP-DB Gene Symbol Synonym(s)=OsFd1;RAP-DB Gene Name Synonym(s)=ferredoxin 1;Oryzabase Gene Symbol Synonym(s)=Fd1%2C OsFd1%2C ADI1;Oryzabase Gene Name Synonym(s)=Ferredoxin I%2C ferredoxin%2C ferredoxin 1%2C anti-disease protein 1;Note=Ferredoxin1%2C Photosynthetic electron transport and carbon assimilation;Transcript_evidence=AK120393,AK061654,AK119206,AK119709;ORF_evidence=Q0J8M2;GO=Biological Process: electron transport chain (GO:0022900),Molecular Function: electron transfer activity (GO:0009055),Molecular Function: iron-sulfur cluster binding (GO:0051536),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=2Fe-2S ferredoxin-like superfamily (IPR036010),Beta-grasp domain superfamily (IPR012675),Ferredoxin [2Fe-2S]%2C plant (IPR010241),2Fe-2S ferredoxin-type iron-sulfur binding domain (IPR001041),2Fe-2S ferredoxin%2C iron-sulphur binding site (IPR006058);NIAS_FLcDNA=J013075A06,001-036-C09,001-041-D12,002-157-E09;Manual Curation=July 2%2C 2020;Literature_PMID=32603511;Oryzabase=9614;Expression=AK120393;TENOR=Os08t0104600-02;KEGG=Os08t0104600-02;Subcellular location=chloroplast (GO:0009507)
Chr08	irgsp1_rep	five_prime_UTR	242546	242628	.	-	.	Parent=Os08t0104600-02
Chr08	irgsp1_rep	CDS	242126	242545	.	-	0	Parent=Os08t0104600-02
Chr08	irgsp1_rep	three_prime_UTR	241783	242125	.	-	.	Parent=Os08t0104600-02
Chr08	irgsp1_rep	mRNA	250589	258752	.	+	.	ID=Os08t0104700-01;Name=Os08t0104700-01;Locus_id=Os08g0104700;Note=Chaperonin Cpn60/TCP-1 family protein.;Transcript_evidence=AK120989 (DDBJ%2C Best hit);ORF_evidence=B8B9Z0 (UniProt);GO=Biological Process: cellular protein metabolic process (GO:0044267),Biological Process: phosphatidylinositol metabolic process (GO:0046488),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphatidylinositol phosphate kinase activity (GO:0016307);InterPro=Chaperonin Cpn60/TCP-1 (IPR002423),Phosphatidylinositol-4-phosphate 5-kinase%2C core (IPR002498),Phosphatidylinositol-4-phosphate 5-kinase (IPR023610);NIAS_FLcDNA=J023042P03;Oryzabase=23563;Expression=AK120989;TENOR=Os08t0104700-01;KEGG=Os08t0104700-01
Chr08	irgsp1_rep	five_prime_UTR	250589	250910	.	+	.	Parent=Os08t0104700-01
Chr08	irgsp1_rep	five_prime_UTR	251553	251653	.	+	.	Parent=Os08t0104700-01
Chr08	irgsp1_rep	CDS	251654	251691	.	+	0	Parent=Os08t0104700-01
Chr08	irgsp1_rep	CDS	252182	252886	.	+	1	Parent=Os08t0104700-01
Chr08	irgsp1_rep	CDS	252999	253143	.	+	1	Parent=Os08t0104700-01
Chr08	irgsp1_rep	CDS	253240	253587	.	+	0	Parent=Os08t0104700-01
Chr08	irgsp1_rep	CDS	254229	255179	.	+	0	Parent=Os08t0104700-01
Chr08	irgsp1_rep	CDS	255317	255651	.	+	0	Parent=Os08t0104700-01
Chr08	irgsp1_rep	CDS	255817	255943	.	+	1	Parent=Os08t0104700-01
Chr08	irgsp1_rep	CDS	256019	256183	.	+	0	Parent=Os08t0104700-01
Chr08	irgsp1_rep	CDS	256320	257717	.	+	0	Parent=Os08t0104700-01
Chr08	irgsp1_rep	CDS	257800	258060	.	+	0	Parent=Os08t0104700-01
Chr08	irgsp1_rep	CDS	258149	258508	.	+	0	Parent=Os08t0104700-01
Chr08	irgsp1_rep	three_prime_UTR	258509	258752	.	+	.	Parent=Os08t0104700-01
Chr08	irgsp1_rep	mRNA	254510	258757	.	+	.	ID=Os08t0104700-02;Name=Os08t0104700-02;Locus_id=Os08g0104700;Note=Hypothetical conserved gene.;Transcript_evidence=AK067468 (DDBJ%2C Best hit);ORF_evidence=B8B9Z0 (UniProt);GO=Biological Process: phosphatidylinositol metabolic process (GO:0046488),Molecular Function: phosphatidylinositol phosphate kinase activity (GO:0016307);InterPro=Phosphatidylinositol-4-phosphate 5-kinase%2C core (IPR002498),Phosphatidylinositol-4-phosphate 5-kinase%2C core%2C subgroup (IPR016034),Phosphatidylinositol-4-phosphate 5-kinase (IPR023610);NIAS_FLcDNA=J013104D05;Oryzabase=23563;Expression=AK067468;TENOR=Os08t0104700-02;KEGG=Os08t0104700-02
Chr08	irgsp1_rep	five_prime_UTR	254510	254510	.	+	.	Parent=Os08t0104700-02
Chr08	irgsp1_rep	CDS	254511	255179	.	+	0	Parent=Os08t0104700-02
Chr08	irgsp1_rep	CDS	255317	255651	.	+	0	Parent=Os08t0104700-02
Chr08	irgsp1_rep	CDS	255817	255943	.	+	1	Parent=Os08t0104700-02
Chr08	irgsp1_rep	CDS	256019	256183	.	+	0	Parent=Os08t0104700-02
Chr08	irgsp1_rep	CDS	256320	257717	.	+	0	Parent=Os08t0104700-02
Chr08	irgsp1_rep	CDS	257800	258060	.	+	0	Parent=Os08t0104700-02
Chr08	irgsp1_rep	CDS	258149	258508	.	+	0	Parent=Os08t0104700-02
Chr08	irgsp1_rep	three_prime_UTR	258509	258757	.	+	.	Parent=Os08t0104700-02
Chr08	irgsp1_rep	mRNA	260013	261320	.	-	.	ID=Os08t0104800-01;Name=Os08t0104800-01;Locus_id=Os08g0104800;Note=Conserved hypothetical protein.;Transcript_evidence=AK101404 (DDBJ%2C Best hit);ORF_evidence=Q6ZJN2 (UniProt);NIAS_FLcDNA=J033037G15;Expression=AK101404;TENOR=Os08t0104800-01;KEGG=Os08t0104800-01
Chr08	irgsp1_rep	five_prime_UTR	261267	261320	.	-	.	Parent=Os08t0104800-01
Chr08	irgsp1_rep	CDS	260319	261266	.	-	0	Parent=Os08t0104800-01
Chr08	irgsp1_rep	three_prime_UTR	260013	260318	.	-	.	Parent=Os08t0104800-01
Chr08	irgsp1_rep	mRNA	268805	272077	.	-	.	ID=Os08t0104900-01;Name=Os08t0104900-01;Locus_id=Os08g0104900;Note=Protein of unknown function DUF6%2C transmembrane domain containing protein.;Transcript_evidence=AK101575 (DDBJ%2C Best hit);ORF_evidence=B4G1R1 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620),Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=J033050J21;Expression=AK101575;TENOR=Os08t0104900-01;KEGG=Os08t0104900-01
Chr08	irgsp1_rep	five_prime_UTR	271690	272077	.	-	.	Parent=Os08t0104900-01
Chr08	irgsp1_rep	CDS	271579	271689	.	-	0	Parent=Os08t0104900-01
Chr08	irgsp1_rep	CDS	270109	270358	.	-	0	Parent=Os08t0104900-01
Chr08	irgsp1_rep	CDS	269767	269974	.	-	2	Parent=Os08t0104900-01
Chr08	irgsp1_rep	CDS	269393	269624	.	-	1	Parent=Os08t0104900-01
Chr08	irgsp1_rep	CDS	269097	269309	.	-	0	Parent=Os08t0104900-01
Chr08	irgsp1_rep	three_prime_UTR	268805	269096	.	-	.	Parent=Os08t0104900-01
Chr08	irgsp1_rep	mRNA	268733	271900	.	-	.	ID=Os08t0104900-02;Name=Os08t0104900-02;Locus_id=Os08g0104900;Note=Protein of unknown function DUF6%2C transmembrane domain containing protein.;Transcript_evidence=AK063987 (DDBJ%2C Best hit);ORF_evidence=B4G1R1 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620),Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=001-124-D11;Expression=AK063987;TENOR=Os08t0104900-02;KEGG=Os08t0104900-02
Chr08	irgsp1_rep	five_prime_UTR	271690	271900	.	-	.	Parent=Os08t0104900-02
Chr08	irgsp1_rep	CDS	271579	271689	.	-	0	Parent=Os08t0104900-02
Chr08	irgsp1_rep	CDS	270109	270358	.	-	0	Parent=Os08t0104900-02
Chr08	irgsp1_rep	CDS	269767	269974	.	-	2	Parent=Os08t0104900-02
Chr08	irgsp1_rep	CDS	269393	269624	.	-	1	Parent=Os08t0104900-02
Chr08	irgsp1_rep	CDS	269097	269309	.	-	0	Parent=Os08t0104900-02
Chr08	irgsp1_rep	three_prime_UTR	268733	269096	.	-	.	Parent=Os08t0104900-02
Chr08	irgsp1_rep	mRNA	272854	276978	.	-	.	ID=Os08t0105000-01;Name=Os08t0105000-01;Locus_id=Os08g0105000;RAP-DB Gene Symbol Synonym(s)=EHD3;RAP-DB Gene Name Synonym(s)=EARLY HEADING DATE 3%2C Early heading date3%2C PHD transcription factor;CGSNL Gene Symbol=EHD3;CGSNL Gene Name=EARLY HEADING DATE 3;Oryzabase Gene Symbol Synonym(s)=Ehd3;Oryzabase Gene Name Synonym(s)=Early heading date3%2C PHD transcription factor;Note=Homeodomain (PHD) transcriptional regulator%2C Flowering promoter;Transcript_evidence=AB517626 (Tohoku IL9%2C functional allele),AB517627 (Tohoku IL9%2C non-functional allele),AK069782;ORF_evidence=Q6ZJM9;GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C PHD-finger (IPR019787);NIAS_FLcDNA=J023030H04;Manual Curation=May 24%2C 2011;Literature_PMID=21284756;Oryzabase=9301;Expression=AK069782;TENOR=Os08t0105000-01;KEGG=Os08t0105000-01
Chr08	irgsp1_rep	five_prime_UTR	276692	276978	.	-	.	Parent=Os08t0105000-01
Chr08	irgsp1_rep	CDS	276590	276691	.	-	0	Parent=Os08t0105000-01
Chr08	irgsp1_rep	CDS	276242	276445	.	-	0	Parent=Os08t0105000-01
Chr08	irgsp1_rep	CDS	275832	276152	.	-	0	Parent=Os08t0105000-01
Chr08	irgsp1_rep	CDS	274832	274921	.	-	0	Parent=Os08t0105000-01
Chr08	irgsp1_rep	CDS	274602	274646	.	-	0	Parent=Os08t0105000-01
Chr08	irgsp1_rep	CDS	273583	274512	.	-	0	Parent=Os08t0105000-01
Chr08	irgsp1_rep	three_prime_UTR	272854	273582	.	-	.	Parent=Os08t0105000-01
Chr08	irgsp1_rep	mRNA	273361	276926	.	-	.	ID=Os08t0105000-02;Name=Os08t0105000-02;Locus_id=Os08g0105000;CGSNL Gene Symbol=EHD3;CGSNL Gene Name=EARLY HEADING DATE 3;Oryzabase Gene Symbol Synonym(s)=Ehd3;Oryzabase Gene Name Synonym(s)=Early heading date3%2C PHD transcription factor;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK102613 (DDBJ%2C Best hit);ORF_evidence=F1DK84 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-finger (IPR019787);NIAS_FLcDNA=J033099D14;Oryzabase=9301;Expression=AK102613;TENOR=Os08t0105000-02;KEGG=Os08t0105000-02
Chr08	irgsp1_rep	five_prime_UTR	276692	276926	.	-	.	Parent=Os08t0105000-02
Chr08	irgsp1_rep	CDS	276590	276691	.	-	0	Parent=Os08t0105000-02
Chr08	irgsp1_rep	CDS	276242	276445	.	-	0	Parent=Os08t0105000-02
Chr08	irgsp1_rep	CDS	275832	276152	.	-	0	Parent=Os08t0105000-02
Chr08	irgsp1_rep	CDS	274832	274921	.	-	0	Parent=Os08t0105000-02
Chr08	irgsp1_rep	CDS	274602	274646	.	-	0	Parent=Os08t0105000-02
Chr08	irgsp1_rep	CDS	273583	274512	.	-	0	Parent=Os08t0105000-02
Chr08	irgsp1_rep	three_prime_UTR	273361	273582	.	-	.	Parent=Os08t0105000-02
Chr08	irgsp1_rep	mRNA	273672	274831	.	-	.	ID=Os08t0105000-03;Name=Os08t0105000-03;Locus_id=Os08g0105000;CGSNL Gene Symbol=EHD3;CGSNL Gene Name=EARLY HEADING DATE 3;Oryzabase Gene Symbol Synonym(s)=Ehd3;Oryzabase Gene Name Synonym(s)=Early heading date3%2C PHD transcription factor;Note=Similar to PHD-finger family protein.;Transcript_evidence=AK102260 (DDBJ%2C Best hit);ORF_evidence=F1DK84 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-type%2C conserved site (IPR019786),Zinc finger%2C PHD-finger (IPR019787);NIAS_FLcDNA=J033088K07;Oryzabase=9301;TENOR=Os08t0105000-03
Chr08	irgsp1_rep	five_prime_UTR	274647	274831	.	-	.	Parent=Os08t0105000-03
Chr08	irgsp1_rep	CDS	274602	274646	.	-	0	Parent=Os08t0105000-03
Chr08	irgsp1_rep	CDS	273672	274512	.	-	0	Parent=Os08t0105000-03
Chr08	irgsp1_rep	mRNA	278146	281347	.	-	.	ID=Os08t0105100-01;Name=Os08t0105100-01;Locus_id=Os08g0105100;Oryzabase Gene Symbol Synonym(s)=OsFbox403%2C Os_F0338;Oryzabase Gene Name Synonym(s)=F-box protein 403;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK069415 (DDBJ%2C Best hit),AK099227 (DDBJ%2C Best hit);ORF_evidence=B9FYN6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023019E02,J013091I23;Oryzabase=17176;Expression=AK069415;TENOR=Os08t0105100-01;KEGG=Os08t0105100-01
Chr08	irgsp1_rep	five_prime_UTR	281269	281347	.	-	.	Parent=Os08t0105100-01
Chr08	irgsp1_rep	CDS	279599	281268	.	-	0	Parent=Os08t0105100-01
Chr08	irgsp1_rep	CDS	278544	278547	.	-	1	Parent=Os08t0105100-01
Chr08	irgsp1_rep	three_prime_UTR	278146	278543	.	-	.	Parent=Os08t0105100-01
Chr08	irgsp1_rep	mRNA	288778	290382	.	-	.	ID=Os08t0105400-00;Name=Os08t0105400-00;Locus_id=Os08g0105400;Oryzabase Gene Name Synonym(s)=CytoChrome P450;Note=Similar to P450.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8S9E5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);Oryzabase=18249;TENOR=Os08t0105400-00
Chr08	irgsp1_rep	CDS	288778	290382	.	-	0	Parent=Os08t0105400-00
Chr08	irgsp1_rep	mRNA	288790	290317	.	+	.	ID=Os08t0105450-00;Name=Os08t0105450-00;Locus_id=Os08g0105450;Note=Non-protein coding transcript.;Transcript_evidence=tplb0042b08 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os08t0105450-00
Chr08	irgsp1_rep	exon	288790	290317	.	+	.	Parent=Os08t0105450-00
Chr08	irgsp1_rep	mRNA	293386	294860	.	+	.	ID=Os08t0105550-00;Name=Os08t0105550-00;Locus_id=Os08g0105550;Note=Hypothetical protein.;Transcript_evidence=tplb0042b08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0105550-00
Chr08	irgsp1_rep	five_prime_UTR	293386	294553	.	+	.	Parent=Os08t0105550-00
Chr08	irgsp1_rep	CDS	294554	294805	.	+	0	Parent=Os08t0105550-00
Chr08	irgsp1_rep	three_prime_UTR	294806	294860	.	+	.	Parent=Os08t0105550-00
Chr08	irgsp1_rep	mRNA	293917	294936	.	-	.	ID=Os08t0105600-00;Name=Os08t0105600-00;Locus_id=Os08g0105600;Note=CytoChrome P450 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8BA32 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);TENOR=Os08t0105600-00
Chr08	irgsp1_rep	CDS	294616	294936	.	-	0	Parent=Os08t0105600-00
Chr08	irgsp1_rep	CDS	294328	294543	.	-	0	Parent=Os08t0105600-00
Chr08	irgsp1_rep	CDS	293917	294255	.	-	0	Parent=Os08t0105600-00
Chr08	irgsp1_rep	mRNA	296973	298367	.	-	.	ID=Os08t0105700-01;Name=Os08t0105700-01;Locus_id=Os08g0105700;Oryzabase Gene Name Synonym(s)=CYP450-Like Gene%2C CYP-like protein;Note=Similar to Bx2-like protein.;Transcript_evidence=AK058639 (DDBJ%2C Best hit);ORF_evidence=Q5QIS9 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);NIAS_FLcDNA=001-018-D09;Oryzabase=20264;TENOR=Os08t0105700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	298305	298367	.	-	.	Parent=Os08t0105700-01
Chr08	irgsp1_rep	CDS	297132	298304	.	-	0	Parent=Os08t0105700-01
Chr08	irgsp1_rep	three_prime_UTR	296973	297131	.	-	.	Parent=Os08t0105700-01
Chr08	irgsp1_rep	mRNA	301708	304040	.	-	.	ID=Os08t0105800-01;Name=Os08t0105800-01;Locus_id=Os08g0105800;Note=CytoChrome P450 family protein.;Transcript_evidence=AK067200 (DDBJ%2C Best hit);ORF_evidence=Q58A34 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J013097P19;Expression=AK067200;TENOR=Os08t0105800-01;KEGG=Os08t0105800-01
Chr08	irgsp1_rep	five_prime_UTR	303815	304040	.	-	.	Parent=Os08t0105800-01
Chr08	irgsp1_rep	CDS	302798	303814	.	-	0	Parent=Os08t0105800-01
Chr08	irgsp1_rep	CDS	301982	302614	.	-	0	Parent=Os08t0105800-01
Chr08	irgsp1_rep	three_prime_UTR	301708	301981	.	-	.	Parent=Os08t0105800-01
Chr08	irgsp1_rep	mRNA	302647	304040	.	-	.	ID=Os08t0105800-02;Name=Os08t0105800-02;Locus_id=Os08g0105800;Note=Hypothetical conserved gene.;Transcript_evidence=AK065355 (DDBJ%2C Best hit);ORF_evidence=Q5QIS7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);NIAS_FLcDNA=J013014E16;Expression=AK065355;TENOR=Os08t0105800-02;KEGG=Os08t0105800-02
Chr08	irgsp1_rep	five_prime_UTR	303815	304040	.	-	.	Parent=Os08t0105800-02
Chr08	irgsp1_rep	CDS	302741	303814	.	-	0	Parent=Os08t0105800-02
Chr08	irgsp1_rep	three_prime_UTR	302647	302740	.	-	.	Parent=Os08t0105800-02
Chr08	irgsp1_rep	mRNA	302010	303778	.	+	.	ID=Os08t0105850-00;Name=Os08t0105850-00;Locus_id=Os08g0105850;Note=Hypothetical protein.;Transcript_evidence=tplb0042b08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0105850-00
Chr08	irgsp1_rep	five_prime_UTR	302010	302611	.	+	.	Parent=Os08t0105850-00
Chr08	irgsp1_rep	five_prime_UTR	302831	302953	.	+	.	Parent=Os08t0105850-00
Chr08	irgsp1_rep	CDS	302954	303670	.	+	0	Parent=Os08t0105850-00
Chr08	irgsp1_rep	three_prime_UTR	303671	303778	.	+	.	Parent=Os08t0105850-00
Chr08	irgsp1_rep	mRNA	307962	308998	.	-	.	ID=Os08t0105901-00;Name=Os08t0105901-00;Locus_id=Os08g0105901;Note=Hypothetical gene.;Transcript_evidence=CT836532 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os08t0105901-00;KEGG=Os08t0105901-00
Chr08	irgsp1_rep	five_prime_UTR	308603	308998	.	-	.	Parent=Os08t0105901-00
Chr08	irgsp1_rep	CDS	308189	308602	.	-	0	Parent=Os08t0105901-00
Chr08	irgsp1_rep	three_prime_UTR	307962	308188	.	-	.	Parent=Os08t0105901-00
Chr08	irgsp1_rep	mRNA	308997	309927	.	+	.	ID=Os08t0106000-00;Name=Os08t0106000-00;Locus_id=Os08g0106000;Note=Similar to Bx2-like protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5QIS9 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os08t0106000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	308997	309173	.	+	0	Parent=Os08t0106000-00
Chr08	irgsp1_rep	CDS	309319	309927	.	+	0	Parent=Os08t0106000-00
Chr08	irgsp1_rep	mRNA	317389	318292	.	-	.	ID=Os08t0106100-01;Name=Os08t0106100-01;Locus_id=Os08g0106100;Note=Conserved hypothetical protein.;Transcript_evidence=AK071868 (DDBJ%2C Best hit);ORF_evidence=B8BA34 (UniProt);NIAS_FLcDNA=J023115F08;Expression=AK071868;TENOR=Os08t0106100-01;KEGG=Os08t0106100-01
Chr08	irgsp1_rep	five_prime_UTR	318164	318292	.	-	.	Parent=Os08t0106100-01
Chr08	irgsp1_rep	CDS	317897	318163	.	-	0	Parent=Os08t0106100-01
Chr08	irgsp1_rep	three_prime_UTR	317389	317896	.	-	.	Parent=Os08t0106100-01
Chr08	irgsp1_rep	mRNA	319646	321012	.	+	.	ID=Os08t0106300-00;Name=Os08t0106300-00;Locus_id=Os08g0106300;Note=Similar to CytoChrome P450.;Transcript_evidence=ab initio prediction;ORF_evidence=A1IHG2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os08t0106300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	319646	319915	.	+	0	Parent=Os08t0106300-00
Chr08	irgsp1_rep	CDS	320389	321012	.	+	0	Parent=Os08t0106300-00
Chr08	irgsp1_rep	mRNA	321888	322992	.	-	.	ID=Os08t0106501-01;Name=Os08t0106501-01;Locus_id=Os08g0106501;Note=Protein of unknown function DUF679 family protein.;Transcript_evidence=AK243671 (DDBJ%2C Best hit);ORF_evidence=NP_001175354.1 (RefSeq);InterPro=Protein of unknown function DUF679 (IPR007770);NIAS_FLcDNA=J100089N23;TENOR=Os08t0106501-01;KEGG=Os08t0106501-01
Chr08	irgsp1_rep	five_prime_UTR	322892	322992	.	-	.	Parent=Os08t0106501-01
Chr08	irgsp1_rep	CDS	322217	322891	.	-	0	Parent=Os08t0106501-01
Chr08	irgsp1_rep	three_prime_UTR	321888	322216	.	-	.	Parent=Os08t0106501-01
Chr08	irgsp1_rep	mRNA	328874	330017	.	+	.	ID=Os08t0106600-00;Name=Os08t0106600-00;Locus_id=Os08g0106600;Note=Hypothetical conserved gene.;Transcript_evidence=CT835919 (DDBJ%2C Best hit);ORF_evidence=Q6ZD77 (UniProt);TENOR=Os08t0106600-00;KEGG=Os08t0106600-00
Chr08	irgsp1_rep	five_prime_UTR	328874	328875	.	+	.	Parent=Os08t0106600-00
Chr08	irgsp1_rep	CDS	328876	329694	.	+	0	Parent=Os08t0106600-00
Chr08	irgsp1_rep	three_prime_UTR	329695	330017	.	+	.	Parent=Os08t0106600-00
Chr08	irgsp1_rep	mRNA	335242	336135	.	-	.	ID=Os08t0106700-00;Name=Os08t0106700-00;Locus_id=Os08g0106700;Note=Similar to 10A19I.15.;Transcript_evidence=EU953213 (DDBJ);ORF_evidence=Q9XHV1 (UniProt);TENOR=Os08t0106700-00
Chr08	irgsp1_rep	five_prime_UTR	335791	336135	.	-	.	Parent=Os08t0106700-00
Chr08	irgsp1_rep	five_prime_UTR	335662	335663	.	-	.	Parent=Os08t0106700-00
Chr08	irgsp1_rep	CDS	335242	335661	.	-	0	Parent=Os08t0106700-00
Chr08	irgsp1_rep	mRNA	335277	337778	.	+	.	ID=Os08t0106801-00;Name=Os08t0106801-00;Locus_id=Os08g0106801;Note=Hypothetical protein.;Transcript_evidence=tplb0036g09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0106801-00
Chr08	irgsp1_rep	five_prime_UTR	335277	335740	.	+	.	Parent=Os08t0106801-00
Chr08	irgsp1_rep	five_prime_UTR	336538	336545	.	+	.	Parent=Os08t0106801-00
Chr08	irgsp1_rep	CDS	336546	336797	.	+	0	Parent=Os08t0106801-00
Chr08	irgsp1_rep	three_prime_UTR	336798	336969	.	+	.	Parent=Os08t0106801-00
Chr08	irgsp1_rep	three_prime_UTR	337055	337293	.	+	.	Parent=Os08t0106801-00
Chr08	irgsp1_rep	three_prime_UTR	337384	337778	.	+	.	Parent=Os08t0106801-00
Chr08	irgsp1_rep	mRNA	336444	337882	.	-	.	ID=Os08t0106900-00;Name=Os08t0106900-00;Locus_id=Os08g0106900;Note=Similar to retrotransposon protein.;Transcript_evidence=EU974160 (DDBJ);ORF_evidence=NP_001149744.1 (RefSeq);GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Putative harbinger transposase-derived nuclease (IPR006912);TENOR=Os08t0106900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	337373	337882	.	-	0	Parent=Os08t0106900-00
Chr08	irgsp1_rep	CDS	337059	337284	.	-	0	Parent=Os08t0106900-00
Chr08	irgsp1_rep	CDS	336534	336973	.	-	2	Parent=Os08t0106900-00
Chr08	irgsp1_rep	three_prime_UTR	336444	336533	.	-	.	Parent=Os08t0106900-00
Chr08	irgsp1_rep	mRNA	352146	353810	.	-	.	ID=Os08t0107100-01;Name=Os08t0107100-01;Locus_id=Os08g0107100;Note=Conserved hypothetical protein.;Transcript_evidence=AK065087 (DDBJ%2C Best hit);ORF_evidence=B8BA37 (UniProt);NIAS_FLcDNA=J013001L19;Expression=AK065087;TENOR=Os08t0107100-01;KEGG=Os08t0107100-01
Chr08	irgsp1_rep	five_prime_UTR	353561	353810	.	-	.	Parent=Os08t0107100-01
Chr08	irgsp1_rep	CDS	352547	353560	.	-	0	Parent=Os08t0107100-01
Chr08	irgsp1_rep	three_prime_UTR	352146	352546	.	-	.	Parent=Os08t0107100-01
Chr08	irgsp1_rep	mRNA	352087	353141	.	-	.	ID=Os08t0107100-02;Name=Os08t0107100-02;Locus_id=Os08g0107100;Note=Similar to predicted protein.;Transcript_evidence=AK062216 (DDBJ%2C Best hit);ORF_evidence=B8BA37 (UniProt);NIAS_FLcDNA=001-047-A10;Expression=AK062216;TENOR=Os08t0107100-02;KEGG=Os08t0107100-02
Chr08	irgsp1_rep	five_prime_UTR	353141	353141	.	-	.	Parent=Os08t0107100-02
Chr08	irgsp1_rep	CDS	352547	353140	.	-	0	Parent=Os08t0107100-02
Chr08	irgsp1_rep	three_prime_UTR	352087	352546	.	-	.	Parent=Os08t0107100-02
Chr08	irgsp1_rep	mRNA	357115	360775	.	+	.	ID=Os08t0107300-00;Name=Os08t0107300-00;Locus_id=Os08g0107300;Oryzabase Gene Symbol Synonym(s)=OsPGL30%2C PGL30;Oryzabase Gene Name Synonym(s)=Polygalacturonases-Like 30%2C PG-like 30;Note=Pectin lyase fold/virulence factor domain containing protein.;Transcript_evidence=AK365833 (DDBJ);ORF_evidence=NP_001148255.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);Oryzabase=22307;TENOR=Os08t0107300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	357115	357561	.	+	0	Parent=Os08t0107300-00
Chr08	irgsp1_rep	CDS	358944	359064	.	+	0	Parent=Os08t0107300-00
Chr08	irgsp1_rep	CDS	359291	359465	.	+	2	Parent=Os08t0107300-00
Chr08	irgsp1_rep	CDS	359572	359642	.	+	1	Parent=Os08t0107300-00
Chr08	irgsp1_rep	CDS	359922	360556	.	+	2	Parent=Os08t0107300-00
Chr08	irgsp1_rep	three_prime_UTR	360557	360775	.	+	.	Parent=Os08t0107300-00
Chr08	irgsp1_rep	mRNA	361169	366561	.	-	.	ID=Os08t0107400-01;Name=Os08t0107400-01;Locus_id=Os08g0107400;Note=Similar to GDP-mannose transporter.;Transcript_evidence=AK100839 (DDBJ%2C Best hit);ORF_evidence=XP_002885887.1 (RefSeq);NIAS_FLcDNA=J023123E22;Expression=AK100839;TENOR=Os08t0107400-01;KEGG=Os08t0107400-01
Chr08	irgsp1_rep	five_prime_UTR	366464	366561	.	-	.	Parent=Os08t0107400-01
Chr08	irgsp1_rep	CDS	366450	366463	.	-	0	Parent=Os08t0107400-01
Chr08	irgsp1_rep	CDS	364735	364899	.	-	1	Parent=Os08t0107400-01
Chr08	irgsp1_rep	CDS	364205	364430	.	-	1	Parent=Os08t0107400-01
Chr08	irgsp1_rep	CDS	363947	364086	.	-	0	Parent=Os08t0107400-01
Chr08	irgsp1_rep	CDS	363230	363359	.	-	1	Parent=Os08t0107400-01
Chr08	irgsp1_rep	CDS	362940	363038	.	-	0	Parent=Os08t0107400-01
Chr08	irgsp1_rep	CDS	362618	362772	.	-	0	Parent=Os08t0107400-01
Chr08	irgsp1_rep	CDS	362069	362192	.	-	1	Parent=Os08t0107400-01
Chr08	irgsp1_rep	three_prime_UTR	361169	362068	.	-	.	Parent=Os08t0107400-01
Chr08	irgsp1_rep	mRNA	361295	365510	.	-	.	ID=Os08t0107400-02;Name=Os08t0107400-02;Locus_id=Os08g0107400;Note=Similar to predicted protein.;Transcript_evidence=AK100021 (DDBJ%2C Best hit);ORF_evidence=XP_002885887.1 (RefSeq);NIAS_FLcDNA=J013145H02;Expression=AK100021;TENOR=Os08t0107400-02;KEGG=Os08t0107400-02
Chr08	irgsp1_rep	five_prime_UTR	364923	365510	.	-	.	Parent=Os08t0107400-02
Chr08	irgsp1_rep	CDS	364735	364922	.	-	0	Parent=Os08t0107400-02
Chr08	irgsp1_rep	CDS	364205	364430	.	-	1	Parent=Os08t0107400-02
Chr08	irgsp1_rep	CDS	363913	364086	.	-	0	Parent=Os08t0107400-02
Chr08	irgsp1_rep	three_prime_UTR	363230	363912	.	-	.	Parent=Os08t0107400-02
Chr08	irgsp1_rep	three_prime_UTR	362940	363028	.	-	.	Parent=Os08t0107400-02
Chr08	irgsp1_rep	three_prime_UTR	362618	362772	.	-	.	Parent=Os08t0107400-02
Chr08	irgsp1_rep	three_prime_UTR	362076	362192	.	-	.	Parent=Os08t0107400-02
Chr08	irgsp1_rep	three_prime_UTR	361884	361981	.	-	.	Parent=Os08t0107400-02
Chr08	irgsp1_rep	three_prime_UTR	361295	361797	.	-	.	Parent=Os08t0107400-02
Chr08	irgsp1_rep	mRNA	367761	370978	.	+	.	ID=Os08t0107500-01;Name=Os08t0107500-01;Locus_id=Os08g0107500;Note=Uncharacterised protein family%2C Shwachman-Bodian-Diamond syndrome related domain containing protein.;Transcript_evidence=AK064053 (DDBJ%2C Best hit),AK101418 (DDBJ%2C Best hit);ORF_evidence=NP_001148818.1 (RefSeq);GO=Biological Process: ribosome biogenesis (GO:0042254);InterPro=Ribosome maturation protein SBDS (IPR002140),Ribosome maturation protein SBDS%2C conserved site (IPR018023),Ribosome maturation protein SBDS%2C C-terminal (IPR018978),Ribosome maturation protein SBDS%2C N-terminal (IPR019783);NIAS_FLcDNA=001-125-F01,J033037P14;TENOR=Os08t0107500-01
Chr08	irgsp1_rep	five_prime_UTR	367761	367851	.	+	.	Parent=Os08t0107500-01
Chr08	irgsp1_rep	CDS	367852	368316	.	+	0	Parent=Os08t0107500-01
Chr08	irgsp1_rep	CDS	369416	369583	.	+	0	Parent=Os08t0107500-01
Chr08	irgsp1_rep	CDS	370078	370518	.	+	0	Parent=Os08t0107500-01
Chr08	irgsp1_rep	three_prime_UTR	370519	370519	.	+	.	Parent=Os08t0107500-01
Chr08	irgsp1_rep	three_prime_UTR	370617	370978	.	+	.	Parent=Os08t0107500-01
Chr08	irgsp1_rep	mRNA	371457	373854	.	+	.	ID=Os08t0107600-01;Name=Os08t0107600-01;Locus_id=Os08g0107600;Note=DNA repair metallo-beta-lactamase domain containing protein.;Transcript_evidence=AK119294 (DDBJ%2C Best hit);ORF_evidence=A2YQG6 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Beta-lactamase-like (IPR001279),DNA repair metallo-beta-lactamase (IPR011084);NIAS_FLcDNA=001-130-E03;Expression=AK119294;TENOR=Os08t0107600-01;KEGG=Os08t0107600-01
Chr08	irgsp1_rep	five_prime_UTR	371457	371534	.	+	.	Parent=Os08t0107600-01
Chr08	irgsp1_rep	CDS	371535	371723	.	+	0	Parent=Os08t0107600-01
Chr08	irgsp1_rep	CDS	371798	372076	.	+	0	Parent=Os08t0107600-01
Chr08	irgsp1_rep	CDS	372165	373688	.	+	0	Parent=Os08t0107600-01
Chr08	irgsp1_rep	three_prime_UTR	373689	373854	.	+	.	Parent=Os08t0107600-01
Chr08	irgsp1_rep	mRNA	374114	376404	.	+	.	ID=Os08t0107650-00;Name=Os08t0107650-00;Locus_id=Os08g0107650;Note=Hypothetical protein.;Transcript_evidence=tplb0040d05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0107650-00
Chr08	irgsp1_rep	five_prime_UTR	374114	374534	.	+	.	Parent=Os08t0107650-00
Chr08	irgsp1_rep	five_prime_UTR	374745	375421	.	+	.	Parent=Os08t0107650-00
Chr08	irgsp1_rep	CDS	375422	375658	.	+	0	Parent=Os08t0107650-00
Chr08	irgsp1_rep	three_prime_UTR	375659	376404	.	+	.	Parent=Os08t0107650-00
Chr08	irgsp1_rep	mRNA	375391	376752	.	-	.	ID=Os08t0107700-01;Name=Os08t0107700-01;Locus_id=Os08g0107700;Note=Similar to Rf1 protein%2C mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS).;Transcript_evidence=AK119491 (DDBJ%2C Best hit);ORF_evidence=Q6ZD67 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-134-D04;TENOR=Os08t0107700-01
Chr08	irgsp1_rep	five_prime_UTR	376514	376752	.	-	.	Parent=Os08t0107700-01
Chr08	irgsp1_rep	CDS	375391	376513	.	-	0	Parent=Os08t0107700-01
Chr08	irgsp1_rep	mRNA	381307	383986	.	-	.	ID=Os08t0107800-01;Name=Os08t0107800-01;Locus_id=Os08g0107800;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK070902 (DDBJ%2C Best hit);ORF_evidence=B9FYP6 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J023069E09;TENOR=Os08t0107800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	383888	383986	.	-	.	Parent=Os08t0107800-01
Chr08	irgsp1_rep	CDS	382013	383887	.	-	0	Parent=Os08t0107800-01
Chr08	irgsp1_rep	three_prime_UTR	381307	382012	.	-	.	Parent=Os08t0107800-01
Chr08	irgsp1_rep	mRNA	384114	384836	.	+	.	ID=Os08t0107900-01;Name=Os08t0107900-01;Locus_id=Os08g0107900;Oryzabase Gene Symbol Synonym(s)=OsMAGO1%2C MAGO1;Oryzabase Gene Name Synonym(s)=MAGO NASHI 1;Note=Similar to Protein mago nashi.;Transcript_evidence=AK243376 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Cellular Component: nucleus (GO:0005634);InterPro=Mago nashi protein (IPR004023);NIAS_FLcDNA=J100062P21;Oryzabase=18330;TENOR=Os08t0107900-01;KEGG=Os08t0107900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	384114	384158	.	+	.	Parent=Os08t0107900-01
Chr08	irgsp1_rep	CDS	384159	384392	.	+	0	Parent=Os08t0107900-01
Chr08	irgsp1_rep	CDS	384465	384722	.	+	0	Parent=Os08t0107900-01
Chr08	irgsp1_rep	three_prime_UTR	384723	384836	.	+	.	Parent=Os08t0107900-01
Chr08	irgsp1_rep	mRNA	384159	388023	.	+	.	ID=Os08t0107900-02;Name=Os08t0107900-02;Locus_id=Os08g0107900;RAP-DB Gene Symbol Synonym(s)=OsMAGO1%2C MAGO1;RAP-DB Gene Name Synonym(s)=MAGO NASHI 1;Oryzabase Gene Symbol Synonym(s)=OsMAGO1%2C MAGO1;Oryzabase Gene Name Synonym(s)=MAGO NASHI 1;Note=Core subunit of exon junction complex (EJC)%2C Multiple organ development and reproduction;Transcript_evidence=KF051011 (Zhonghua 10%2C 6bp deletion);ORF_evidence=A0A023T664;GO=Cellular Component: nucleus (GO:0005634);InterPro=Mago nashi protein (IPR004023);Manual Curation=August 4%2C 2014;Literature_PMID=24416299,24820023;Oryzabase=18330
Chr08	irgsp1_rep	CDS	384159	384392	.	+	0	Parent=Os08t0107900-02
Chr08	irgsp1_rep	CDS	384489	384665	.	+	0	Parent=Os08t0107900-02
Chr08	irgsp1_rep	CDS	387958	388023	.	+	0	Parent=Os08t0107900-02
Chr08	irgsp1_rep	mRNA	381747	385683	.	+	.	ID=Os08t0108001-00;Name=Os08t0108001-00;Locus_id=Os08g0108001;Note=Hypothetical protein.;Transcript_evidence=tplb0023j11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0108001-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	381747	383713	.	+	.	Parent=Os08t0108001-00
Chr08	irgsp1_rep	five_prime_UTR	385291	385366	.	+	.	Parent=Os08t0108001-00
Chr08	irgsp1_rep	CDS	385367	385683	.	+	0	Parent=Os08t0108001-00
Chr08	irgsp1_rep	mRNA	389808	390784	.	-	.	ID=Os08t0108100-01;Name=Os08t0108100-01;Locus_id=Os08g0108100;Note=Pectinesterase inhibitor domain containing protein.;Transcript_evidence=AK070037 (DDBJ%2C Best hit);ORF_evidence=B6UIE5 (UniProt);GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);NIAS_FLcDNA=J023037I19;Expression=AK070037;TENOR=Os08t0108100-01;KEGG=Os08t0108100-01
Chr08	irgsp1_rep	five_prime_UTR	390634	390784	.	-	.	Parent=Os08t0108100-01
Chr08	irgsp1_rep	CDS	389950	390633	.	-	0	Parent=Os08t0108100-01
Chr08	irgsp1_rep	three_prime_UTR	389808	389949	.	-	.	Parent=Os08t0108100-01
Chr08	irgsp1_rep	mRNA	395230	400100	.	+	.	ID=Os08t0108200-01;Name=Os08t0108200-01;Locus_id=Os08g0108200;Note=G-protein%2C beta subunit family protein.;Transcript_evidence=AK121823 (DDBJ%2C Best hit);ORF_evidence=B4FIA4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=G-protein%2C beta subunit (IPR001632),WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J033099F21;Expression=AK121823;TENOR=Os08t0108200-01;KEGG=Os08t0108200-01
Chr08	irgsp1_rep	five_prime_UTR	395230	395335	.	+	.	Parent=Os08t0108200-01
Chr08	irgsp1_rep	CDS	395336	395449	.	+	0	Parent=Os08t0108200-01
Chr08	irgsp1_rep	CDS	395573	395684	.	+	0	Parent=Os08t0108200-01
Chr08	irgsp1_rep	CDS	395804	395830	.	+	2	Parent=Os08t0108200-01
Chr08	irgsp1_rep	CDS	396134	396206	.	+	2	Parent=Os08t0108200-01
Chr08	irgsp1_rep	CDS	396305	396408	.	+	1	Parent=Os08t0108200-01
Chr08	irgsp1_rep	CDS	396491	396705	.	+	2	Parent=Os08t0108200-01
Chr08	irgsp1_rep	CDS	396776	396875	.	+	0	Parent=Os08t0108200-01
Chr08	irgsp1_rep	CDS	397086	397152	.	+	2	Parent=Os08t0108200-01
Chr08	irgsp1_rep	CDS	397975	398063	.	+	1	Parent=Os08t0108200-01
Chr08	irgsp1_rep	CDS	398157	398295	.	+	2	Parent=Os08t0108200-01
Chr08	irgsp1_rep	CDS	398404	398504	.	+	1	Parent=Os08t0108200-01
Chr08	irgsp1_rep	CDS	399268	399435	.	+	2	Parent=Os08t0108200-01
Chr08	irgsp1_rep	CDS	399649	399857	.	+	2	Parent=Os08t0108200-01
Chr08	irgsp1_rep	three_prime_UTR	399858	400100	.	+	.	Parent=Os08t0108200-01
Chr08	irgsp1_rep	mRNA	400135	401424	.	-	.	ID=Os08t0108300-01;Name=Os08t0108300-01;Locus_id=Os08g0108300;Oryzabase Gene Symbol Synonym(s)=OsWD40-152;Note=Pistil-specific extensin-like protein family protein.;Transcript_evidence=AK063596 (DDBJ%2C Best hit);ORF_evidence=A3BNX1 (UniProt);NIAS_FLcDNA=001-118-B05;Oryzabase=10833;Expression=AK063596;TENOR=Os08t0108300-01;KEGG=Os08t0108300-01
Chr08	irgsp1_rep	five_prime_UTR	401377	401424	.	-	.	Parent=Os08t0108300-01
Chr08	irgsp1_rep	CDS	400348	401376	.	-	0	Parent=Os08t0108300-01
Chr08	irgsp1_rep	three_prime_UTR	400135	400347	.	-	.	Parent=Os08t0108300-01
Chr08	irgsp1_rep	mRNA	419186	420578	.	-	.	ID=Os08t0108500-01;Name=Os08t0108500-01;Locus_id=Os08g0108500;Oryzabase Gene Symbol Synonym(s)=OsbHLH124;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 124;Note=Similar to Transcription factor LAX PANICLE.;Transcript_evidence=AK241005 (DDBJ%2C Best hit);ORF_evidence=NP_196537.1 (RefSeq);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J065053F23;Oryzabase=15402;TENOR=Os08t0108500-01;KEGG=Os08t0108500-01
Chr08	irgsp1_rep	five_prime_UTR	420356	420578	.	-	.	Parent=Os08t0108500-01
Chr08	irgsp1_rep	CDS	419435	420355	.	-	0	Parent=Os08t0108500-01
Chr08	irgsp1_rep	three_prime_UTR	419186	419434	.	-	.	Parent=Os08t0108500-01
Chr08	irgsp1_rep	mRNA	435232	437034	.	-	.	ID=Os08t0108700-00;Name=Os08t0108700-00;Locus_id=Os08g0108700;Note=Glycolipid transfer protein domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001060806.2 (RefSeq);GO=Biological Process: glycolipid transport (GO:0046836),Cellular Component: cytoplasm (GO:0005737),Molecular Function: glycolipid transporter activity (GO:0017089),Molecular Function: glycolipid binding (GO:0051861);InterPro=Glycolipid transfer protein domain (IPR014830);TENOR=Os08t0108700-00
Chr08	irgsp1_rep	CDS	436860	437034	.	-	0	Parent=Os08t0108700-00
Chr08	irgsp1_rep	CDS	436231	436286	.	-	2	Parent=Os08t0108700-00
Chr08	irgsp1_rep	CDS	435959	436089	.	-	0	Parent=Os08t0108700-00
Chr08	irgsp1_rep	CDS	435723	435888	.	-	1	Parent=Os08t0108700-00
Chr08	irgsp1_rep	CDS	435368	435511	.	-	0	Parent=Os08t0108700-00
Chr08	irgsp1_rep	CDS	435232	435267	.	-	0	Parent=Os08t0108700-00
Chr08	irgsp1_rep	mRNA	441174	441508	.	+	.	ID=Os08t0108925-00;Name=Os08t0108925-00;Locus_id=Os08g0108925;Note=Conserved hypothetical protein.;Transcript_evidence=AK330151 (DDBJ);ORF_evidence=NP_001060014.1 (RefSeq);TENOR=Os08t0108925-00
Chr08	irgsp1_rep	five_prime_UTR	441174	441307	.	+	.	Parent=Os08t0108925-00
Chr08	irgsp1_rep	CDS	441308	441508	.	+	0	Parent=Os08t0108925-00
Chr08	irgsp1_rep	mRNA	445543	450382	.	+	.	ID=Os08t0109000-01;Name=Os08t0109000-01;Locus_id=Os08g0109000;Note=ENTH/VHS domain containing protein.;Transcript_evidence=AK107316 (DDBJ%2C Best hit),AK067345 (DDBJ%2C Best hit);ORF_evidence=B6TCP0 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Cellular Component: intracellular (GO:0005622);InterPro=VHS (IPR002014),GAT (IPR004152),ENTH/VHS (IPR008942);NIAS_FLcDNA=002-126-E01,J013105N04;TENOR=Os08t0109000-01
Chr08	irgsp1_rep	five_prime_UTR	445543	445715	.	+	.	Parent=Os08t0109000-01
Chr08	irgsp1_rep	five_prime_UTR	445919	445986	.	+	.	Parent=Os08t0109000-01
Chr08	irgsp1_rep	CDS	445987	446087	.	+	0	Parent=Os08t0109000-01
Chr08	irgsp1_rep	CDS	446414	446492	.	+	1	Parent=Os08t0109000-01
Chr08	irgsp1_rep	CDS	446933	447031	.	+	0	Parent=Os08t0109000-01
Chr08	irgsp1_rep	CDS	447114	447227	.	+	0	Parent=Os08t0109000-01
Chr08	irgsp1_rep	CDS	447565	447728	.	+	0	Parent=Os08t0109000-01
Chr08	irgsp1_rep	CDS	448584	448659	.	+	1	Parent=Os08t0109000-01
Chr08	irgsp1_rep	CDS	448849	448934	.	+	0	Parent=Os08t0109000-01
Chr08	irgsp1_rep	CDS	449053	449208	.	+	1	Parent=Os08t0109000-01
Chr08	irgsp1_rep	CDS	449281	449611	.	+	1	Parent=Os08t0109000-01
Chr08	irgsp1_rep	three_prime_UTR	449612	450382	.	+	.	Parent=Os08t0109000-01
Chr08	irgsp1_rep	mRNA	451143	458227	.	+	.	ID=Os08t0109100-01;Name=Os08t0109100-01;Locus_id=Os08g0109100;Note=Similar to SAC domain protein 1 (FIG4-like protein AtFIG4).;Transcript_evidence=AK121887 (DDBJ%2C Best hit),AK120484 (DDBJ%2C Best hit);ORF_evidence=NP_173676.2 (RefSeq);GO=Molecular Function: phosphoric ester hydrolase activity (GO:0042578);InterPro=Synaptojanin%2C N-terminal (IPR002013);NIAS_FLcDNA=J033105A05,J013112K21;TENOR=Os08t0109100-01
Chr08	irgsp1_rep	five_prime_UTR	451143	451234	.	+	.	Parent=Os08t0109100-01
Chr08	irgsp1_rep	CDS	451235	451306	.	+	0	Parent=Os08t0109100-01
Chr08	irgsp1_rep	CDS	451420	451624	.	+	0	Parent=Os08t0109100-01
Chr08	irgsp1_rep	CDS	452083	452248	.	+	2	Parent=Os08t0109100-01
Chr08	irgsp1_rep	CDS	452376	452598	.	+	1	Parent=Os08t0109100-01
Chr08	irgsp1_rep	CDS	453329	453405	.	+	0	Parent=Os08t0109100-01
Chr08	irgsp1_rep	CDS	453717	453904	.	+	1	Parent=Os08t0109100-01
Chr08	irgsp1_rep	CDS	454192	454289	.	+	2	Parent=Os08t0109100-01
Chr08	irgsp1_rep	CDS	454549	454682	.	+	0	Parent=Os08t0109100-01
Chr08	irgsp1_rep	CDS	454768	454902	.	+	1	Parent=Os08t0109100-01
Chr08	irgsp1_rep	CDS	455610	455979	.	+	1	Parent=Os08t0109100-01
Chr08	irgsp1_rep	CDS	456244	456365	.	+	0	Parent=Os08t0109100-01
Chr08	irgsp1_rep	CDS	456502	456621	.	+	1	Parent=Os08t0109100-01
Chr08	irgsp1_rep	CDS	456761	456973	.	+	1	Parent=Os08t0109100-01
Chr08	irgsp1_rep	CDS	457053	457241	.	+	1	Parent=Os08t0109100-01
Chr08	irgsp1_rep	CDS	457325	457436	.	+	1	Parent=Os08t0109100-01
Chr08	irgsp1_rep	CDS	457540	457785	.	+	0	Parent=Os08t0109100-01
Chr08	irgsp1_rep	three_prime_UTR	457786	458227	.	+	.	Parent=Os08t0109100-01
Chr08	irgsp1_rep	mRNA	455810	458150	.	+	.	ID=Os08t0109100-02;Name=Os08t0109100-02;Locus_id=Os08g0109100;Note=Similar to predicted protein.;Transcript_evidence=AK062002 (DDBJ%2C Best hit);ORF_evidence=NP_173676.2 (RefSeq);GO=Molecular Function: phosphoric ester hydrolase activity (GO:0042578);InterPro=Synaptojanin%2C N-terminal (IPR002013);NIAS_FLcDNA=001-043-D06;Expression=AK062002;TENOR=Os08t0109100-02;KEGG=Os08t0109100-02
Chr08	irgsp1_rep	five_prime_UTR	455810	455811	.	+	.	Parent=Os08t0109100-02
Chr08	irgsp1_rep	CDS	455812	455979	.	+	0	Parent=Os08t0109100-02
Chr08	irgsp1_rep	CDS	456244	456365	.	+	0	Parent=Os08t0109100-02
Chr08	irgsp1_rep	CDS	456502	456621	.	+	1	Parent=Os08t0109100-02
Chr08	irgsp1_rep	CDS	456743	456973	.	+	1	Parent=Os08t0109100-02
Chr08	irgsp1_rep	CDS	457053	457241	.	+	1	Parent=Os08t0109100-02
Chr08	irgsp1_rep	CDS	457325	457436	.	+	1	Parent=Os08t0109100-02
Chr08	irgsp1_rep	CDS	457540	457785	.	+	0	Parent=Os08t0109100-02
Chr08	irgsp1_rep	three_prime_UTR	457786	458150	.	+	.	Parent=Os08t0109100-02
Chr08	irgsp1_rep	mRNA	451205	457941	.	-	.	ID=Os08t0109150-00;Name=Os08t0109150-00;Locus_id=Os08g0109150;Note=Hypothetical protein.;Transcript_evidence=tplb0022d08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0109150-00
Chr08	irgsp1_rep	five_prime_UTR	457526	457941	.	-	.	Parent=Os08t0109150-00
Chr08	irgsp1_rep	five_prime_UTR	457323	457422	.	-	.	Parent=Os08t0109150-00
Chr08	irgsp1_rep	five_prime_UTR	457061	457239	.	-	.	Parent=Os08t0109150-00
Chr08	irgsp1_rep	five_prime_UTR	456737	456979	.	-	.	Parent=Os08t0109150-00
Chr08	irgsp1_rep	five_prime_UTR	456499	456602	.	-	.	Parent=Os08t0109150-00
Chr08	irgsp1_rep	five_prime_UTR	456243	456363	.	-	.	Parent=Os08t0109150-00
Chr08	irgsp1_rep	five_prime_UTR	455619	455978	.	-	.	Parent=Os08t0109150-00
Chr08	irgsp1_rep	five_prime_UTR	454766	454905	.	-	.	Parent=Os08t0109150-00
Chr08	irgsp1_rep	five_prime_UTR	454551	454680	.	-	.	Parent=Os08t0109150-00
Chr08	irgsp1_rep	five_prime_UTR	454182	454296	.	-	.	Parent=Os08t0109150-00
Chr08	irgsp1_rep	five_prime_UTR	453454	453892	.	-	.	Parent=Os08t0109150-00
Chr08	irgsp1_rep	CDS	453326	453453	.	-	0	Parent=Os08t0109150-00
Chr08	irgsp1_rep	CDS	452493	452595	.	-	1	Parent=Os08t0109150-00
Chr08	irgsp1_rep	three_prime_UTR	452374	452492	.	-	.	Parent=Os08t0109150-00
Chr08	irgsp1_rep	three_prime_UTR	452081	452243	.	-	.	Parent=Os08t0109150-00
Chr08	irgsp1_rep	three_prime_UTR	451429	451622	.	-	.	Parent=Os08t0109150-00
Chr08	irgsp1_rep	three_prime_UTR	451205	451315	.	-	.	Parent=Os08t0109150-00
Chr08	irgsp1_rep	mRNA	458533	461304	.	+	.	ID=Os08t0109200-01;Name=Os08t0109200-01;Locus_id=Os08g0109200;Note=Similar to S-glutathione dehydrogenase/class III alcohol dehydrogenase.;Transcript_evidence=AK101912 (DDBJ%2C Best hit);ORF_evidence=B6T6Y2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040),Polyketide synthase%2C enoylreductase (IPR020843);NIAS_FLcDNA=J033071G08;TENOR=Os08t0109200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	458533	458711	.	+	.	Parent=Os08t0109200-01
Chr08	irgsp1_rep	CDS	458712	458976	.	+	0	Parent=Os08t0109200-01
Chr08	irgsp1_rep	CDS	459080	459215	.	+	2	Parent=Os08t0109200-01
Chr08	irgsp1_rep	CDS	459396	459465	.	+	1	Parent=Os08t0109200-01
Chr08	irgsp1_rep	CDS	459584	459677	.	+	0	Parent=Os08t0109200-01
Chr08	irgsp1_rep	CDS	459773	459986	.	+	2	Parent=Os08t0109200-01
Chr08	irgsp1_rep	CDS	460103	460244	.	+	1	Parent=Os08t0109200-01
Chr08	irgsp1_rep	CDS	460423	460593	.	+	0	Parent=Os08t0109200-01
Chr08	irgsp1_rep	CDS	460933	461127	.	+	0	Parent=Os08t0109200-01
Chr08	irgsp1_rep	three_prime_UTR	461128	461304	.	+	.	Parent=Os08t0109200-01
Chr08	irgsp1_rep	mRNA	458764	461264	.	-	.	ID=Os08t0109250-00;Name=Os08t0109250-00;Locus_id=Os08g0109250;Note=Hypothetical protein.;Transcript_evidence=tplb0062o19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0109250-00
Chr08	irgsp1_rep	five_prime_UTR	460915	461264	.	-	.	Parent=Os08t0109250-00
Chr08	irgsp1_rep	five_prime_UTR	460431	460578	.	-	.	Parent=Os08t0109250-00
Chr08	irgsp1_rep	five_prime_UTR	460101	460255	.	-	.	Parent=Os08t0109250-00
Chr08	irgsp1_rep	five_prime_UTR	459771	459984	.	-	.	Parent=Os08t0109250-00
Chr08	irgsp1_rep	five_prime_UTR	459618	459675	.	-	.	Parent=Os08t0109250-00
Chr08	irgsp1_rep	CDS	459575	459617	.	-	0	Parent=Os08t0109250-00
Chr08	irgsp1_rep	CDS	459393	459455	.	-	2	Parent=Os08t0109250-00
Chr08	irgsp1_rep	CDS	459097	459212	.	-	2	Parent=Os08t0109250-00
Chr08	irgsp1_rep	CDS	458764	458995	.	-	0	Parent=Os08t0109250-00
Chr08	irgsp1_rep	mRNA	461655	464813	.	-	.	ID=Os08t0109300-01;Name=Os08t0109300-01;Locus_id=Os08g0109300;RAP-DB Gene Symbol Synonym(s)=AK1%2C OsAK1;RAP-DB Gene Name Synonym(s)=ADENYLATE KINASE 1%2C adenylate kinase 1;CGSNL Gene Symbol=AK1;CGSNL Gene Name=ADENYLATE KINASE 1;Oryzabase Gene Symbol Synonym(s)=OsAK1;Oryzabase Gene Name Synonym(s)=adenylate kinase 1;Note=Homolog of Arabidopsis ADENOSINE MONOPHOSPHATE KINASE 2 (AMK2)%2C A member of adenylate kinase (AK) family;Transcript_evidence=AK061825,AK066688;ORF_evidence=Q6ZC69;GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Molecular Function: adenylate kinase activity (GO:0004017),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphotransferase activity%2C phosphate group as acceptor (GO:0016776),Molecular Function: nucleobase-containing compound kinase activity (GO:0019205);InterPro=Adenylate kinase/UMP-CMP kinase (IPR000850),Adenylate kinase subfamily (IPR006259),P-loop containing nucleoside triphosphate hydrolase (IPR027417),Adenylate kinase%2C conserved site (IPR033690);NIAS_FLcDNA=001-040-C04, J013073K09;Manual Curation=June 5%2C 2017;Literature_PMID=28059476;Oryzabase=21642;Expression=AK061825;TENOR=Os08t0109300-01;KEGG=Os08t0109300-01 (EC:2.7.4.3);Subcellular location=chloroplast (GO:0009507)
Chr08	irgsp1_rep	five_prime_UTR	464751	464813	.	-	.	Parent=Os08t0109300-01
Chr08	irgsp1_rep	CDS	464559	464750	.	-	0	Parent=Os08t0109300-01
Chr08	irgsp1_rep	CDS	464066	464161	.	-	0	Parent=Os08t0109300-01
Chr08	irgsp1_rep	CDS	463727	463855	.	-	0	Parent=Os08t0109300-01
Chr08	irgsp1_rep	CDS	463505	463639	.	-	0	Parent=Os08t0109300-01
Chr08	irgsp1_rep	CDS	462878	463024	.	-	0	Parent=Os08t0109300-01
Chr08	irgsp1_rep	CDS	462249	462323	.	-	0	Parent=Os08t0109300-01
Chr08	irgsp1_rep	CDS	461936	462034	.	-	0	Parent=Os08t0109300-01
Chr08	irgsp1_rep	three_prime_UTR	461655	461935	.	-	.	Parent=Os08t0109300-01
Chr08	irgsp1_rep	mRNA	468151	473510	.	+	.	ID=Os08t0109400-01;Name=Os08t0109400-01;Locus_id=Os08g0109400;CGSNL Gene Symbol=IAA25;Oryzabase Gene Symbol Synonym(s)=OsIAA25;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 25;Note=AUX/IAA protein family protein.;Transcript_evidence=AK068232 (DDBJ%2C Best hit);ORF_evidence=P0C128 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Aux/IAA-ARF-dimerisation (IPR011525);NIAS_FLcDNA=J013149D08;Oryzabase=10912;Expression=AK068232;TENOR=Os08t0109400-01;KEGG=Os08t0109400-01
Chr08	irgsp1_rep	five_prime_UTR	468151	468569	.	+	.	Parent=Os08t0109400-01
Chr08	irgsp1_rep	five_prime_UTR	468680	468881	.	+	.	Parent=Os08t0109400-01
Chr08	irgsp1_rep	five_prime_UTR	468960	469982	.	+	.	Parent=Os08t0109400-01
Chr08	irgsp1_rep	five_prime_UTR	470092	470183	.	+	.	Parent=Os08t0109400-01
Chr08	irgsp1_rep	five_prime_UTR	470459	470500	.	+	.	Parent=Os08t0109400-01
Chr08	irgsp1_rep	five_prime_UTR	470664	470773	.	+	.	Parent=Os08t0109400-01
Chr08	irgsp1_rep	five_prime_UTR	471242	471259	.	+	.	Parent=Os08t0109400-01
Chr08	irgsp1_rep	CDS	471260	471507	.	+	0	Parent=Os08t0109400-01
Chr08	irgsp1_rep	CDS	472245	472546	.	+	1	Parent=Os08t0109400-01
Chr08	irgsp1_rep	CDS	472629	472749	.	+	2	Parent=Os08t0109400-01
Chr08	irgsp1_rep	CDS	472871	472940	.	+	1	Parent=Os08t0109400-01
Chr08	irgsp1_rep	three_prime_UTR	472941	472948	.	+	.	Parent=Os08t0109400-01
Chr08	irgsp1_rep	three_prime_UTR	473066	473510	.	+	.	Parent=Os08t0109400-01
Chr08	irgsp1_rep	mRNA	475442	482953	.	+	.	ID=Os08t0109500-01;Name=Os08t0109500-01;Locus_id=Os08g0109500;Note=Bromodomain containing protein.;Transcript_evidence=AK069943 (DDBJ%2C Best hit);ORF_evidence=A2YQI3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Bromodomain (IPR001487),Bromodomain%2C conserved site (IPR018359);NIAS_FLcDNA=J023037H17;Expression=AK069943;TENOR=Os08t0109500-01;KEGG=Os08t0109500-01
Chr08	irgsp1_rep	five_prime_UTR	475442	475675	.	+	.	Parent=Os08t0109500-01
Chr08	irgsp1_rep	five_prime_UTR	476194	476252	.	+	.	Parent=Os08t0109500-01
Chr08	irgsp1_rep	five_prime_UTR	478022	478075	.	+	.	Parent=Os08t0109500-01
Chr08	irgsp1_rep	CDS	478076	478807	.	+	0	Parent=Os08t0109500-01
Chr08	irgsp1_rep	CDS	478925	479002	.	+	0	Parent=Os08t0109500-01
Chr08	irgsp1_rep	CDS	479617	479854	.	+	0	Parent=Os08t0109500-01
Chr08	irgsp1_rep	CDS	480477	480552	.	+	2	Parent=Os08t0109500-01
Chr08	irgsp1_rep	CDS	481167	481308	.	+	1	Parent=Os08t0109500-01
Chr08	irgsp1_rep	CDS	481673	481966	.	+	0	Parent=Os08t0109500-01
Chr08	irgsp1_rep	CDS	482384	482596	.	+	0	Parent=Os08t0109500-01
Chr08	irgsp1_rep	three_prime_UTR	482597	482953	.	+	.	Parent=Os08t0109500-01
Chr08	irgsp1_rep	mRNA	476193	482978	.	+	.	ID=Os08t0109500-02;Name=Os08t0109500-02;Locus_id=Os08g0109500;Note=Bromodomain containing protein.;Transcript_evidence=AK120789 (DDBJ%2C Best hit);ORF_evidence=A2YQI3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Bromodomain (IPR001487),Bromodomain%2C conserved site (IPR018359);NIAS_FLcDNA=J023011K01;Expression=AK120789;TENOR=Os08t0109500-02;KEGG=Os08t0109500-02
Chr08	irgsp1_rep	five_prime_UTR	476193	476252	.	+	.	Parent=Os08t0109500-02
Chr08	irgsp1_rep	five_prime_UTR	478022	478075	.	+	.	Parent=Os08t0109500-02
Chr08	irgsp1_rep	CDS	478076	478807	.	+	0	Parent=Os08t0109500-02
Chr08	irgsp1_rep	CDS	478925	479002	.	+	0	Parent=Os08t0109500-02
Chr08	irgsp1_rep	CDS	479617	479854	.	+	0	Parent=Os08t0109500-02
Chr08	irgsp1_rep	CDS	480477	480552	.	+	2	Parent=Os08t0109500-02
Chr08	irgsp1_rep	CDS	481167	481308	.	+	1	Parent=Os08t0109500-02
Chr08	irgsp1_rep	CDS	481673	481966	.	+	0	Parent=Os08t0109500-02
Chr08	irgsp1_rep	CDS	482384	482596	.	+	0	Parent=Os08t0109500-02
Chr08	irgsp1_rep	three_prime_UTR	482597	482978	.	+	.	Parent=Os08t0109500-02
Chr08	irgsp1_rep	mRNA	496929	500019	.	+	.	ID=Os08t0109800-01;Name=Os08t0109800-01;Locus_id=Os08g0109800;Oryzabase Gene Symbol Synonym(s)=OsCRR2;Oryzabase Gene Name Synonym(s)=CRINKLY4-RELATED protein 2;Note=Regulator of Chromosome condensation/beta-lactamase-inhibitor protein II domain containing protein.;Transcript_evidence=AK109954 (DDBJ%2C Best hit);ORF_evidence=A3BNY2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Regulator of Chromosome condensation/beta-lactamase-inhibitor protein II (IPR009091),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-159-A10;Oryzabase=10378;Expression=AK109954;TENOR=Os08t0109800-01;KEGG=Os08t0109800-01
Chr08	irgsp1_rep	five_prime_UTR	496929	497001	.	+	.	Parent=Os08t0109800-01
Chr08	irgsp1_rep	CDS	497002	499512	.	+	0	Parent=Os08t0109800-01
Chr08	irgsp1_rep	three_prime_UTR	499513	500019	.	+	.	Parent=Os08t0109800-01
Chr08	irgsp1_rep	mRNA	513763	518274	.	-	.	ID=Os08t0109900-01;Name=Os08t0109900-01;Locus_id=Os08g0109900;Note=Similar to Nucleic acid binding protein.;Transcript_evidence=AK241328 (DDBJ%2C Best hit);ORF_evidence=B6T3P2 (UniProt);GO=Biological Process: mRNA processing (GO:0006397),Cellular Component: nucleus (GO:0005634),Cellular Component: cytoplasm (GO:0005737),Molecular Function: RNA binding (GO:0003723);InterPro=Tudor domain (IPR002999),Survival motor neuron (IPR010304),Tudor subgroup (IPR018351);NIAS_FLcDNA=J065143M16;TENOR=Os08t0109900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	518109	518274	.	-	.	Parent=Os08t0109900-01
Chr08	irgsp1_rep	five_prime_UTR	516239	516844	.	-	.	Parent=Os08t0109900-01
Chr08	irgsp1_rep	CDS	516125	516238	.	-	0	Parent=Os08t0109900-01
Chr08	irgsp1_rep	CDS	515824	515906	.	-	0	Parent=Os08t0109900-01
Chr08	irgsp1_rep	CDS	515653	515728	.	-	1	Parent=Os08t0109900-01
Chr08	irgsp1_rep	CDS	514914	515099	.	-	0	Parent=Os08t0109900-01
Chr08	irgsp1_rep	CDS	514374	514502	.	-	0	Parent=Os08t0109900-01
Chr08	irgsp1_rep	CDS	513942	514109	.	-	0	Parent=Os08t0109900-01
Chr08	irgsp1_rep	three_prime_UTR	513763	513941	.	-	.	Parent=Os08t0109900-01
Chr08	irgsp1_rep	mRNA	519662	523875	.	-	.	ID=Os08t0110000-01;Name=Os08t0110000-01;Locus_id=Os08g0110000;Note=Alpha/beta hydrolase fold-1 domain containing protein.;Transcript_evidence=AK073752 (DDBJ%2C Best hit);ORF_evidence=NP_001150431.1 (RefSeq);NIAS_FLcDNA=J033068G24;TENOR=Os08t0110000-01
Chr08	irgsp1_rep	five_prime_UTR	522984	523875	.	-	.	Parent=Os08t0110000-01
Chr08	irgsp1_rep	CDS	522672	522983	.	-	0	Parent=Os08t0110000-01
Chr08	irgsp1_rep	CDS	520852	521091	.	-	0	Parent=Os08t0110000-01
Chr08	irgsp1_rep	CDS	520621	520764	.	-	0	Parent=Os08t0110000-01
Chr08	irgsp1_rep	CDS	520402	520536	.	-	0	Parent=Os08t0110000-01
Chr08	irgsp1_rep	CDS	519908	520273	.	-	0	Parent=Os08t0110000-01
Chr08	irgsp1_rep	three_prime_UTR	519662	519907	.	-	.	Parent=Os08t0110000-01
Chr08	irgsp1_rep	mRNA	519662	523547	.	-	.	ID=Os08t0110000-02;Name=Os08t0110000-02;Locus_id=Os08g0110000;Note=Alpha/beta hydrolase fold-1 domain containing protein.;Transcript_evidence=AK071992 (DDBJ%2C Best hit);ORF_evidence=NP_001150431.1 (RefSeq);NIAS_FLcDNA=J013091K21;TENOR=Os08t0110000-02
Chr08	irgsp1_rep	five_prime_UTR	522984	523547	.	-	.	Parent=Os08t0110000-02
Chr08	irgsp1_rep	CDS	522672	522983	.	-	0	Parent=Os08t0110000-02
Chr08	irgsp1_rep	CDS	520852	521091	.	-	0	Parent=Os08t0110000-02
Chr08	irgsp1_rep	CDS	520621	520764	.	-	0	Parent=Os08t0110000-02
Chr08	irgsp1_rep	CDS	520402	520536	.	-	0	Parent=Os08t0110000-02
Chr08	irgsp1_rep	CDS	519908	520273	.	-	0	Parent=Os08t0110000-02
Chr08	irgsp1_rep	three_prime_UTR	519662	519907	.	-	.	Parent=Os08t0110000-02
Chr08	irgsp1_rep	mRNA	529394	531815	.	+	.	ID=Os08t0110100-01;Name=Os08t0110100-01;Locus_id=Os08g0110100;Note=Ribosomal protein L30 family protein.;Transcript_evidence=AK063315 (DDBJ%2C Best hit);ORF_evidence=NP_001152726.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Cellular Component: large ribosomal subunit (GO:0015934),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L30%2C bacterial-type (IPR005996),Ribosomal protein L30%2C ferredoxin-like fold domain (IPR016082);NIAS_FLcDNA=001-113-G07;Expression=AK063315;TENOR=Os08t0110100-01;KEGG=Os08t0110100-01
Chr08	irgsp1_rep	five_prime_UTR	529394	529465	.	+	.	Parent=Os08t0110100-01
Chr08	irgsp1_rep	CDS	529466	529816	.	+	0	Parent=Os08t0110100-01
Chr08	irgsp1_rep	three_prime_UTR	529817	529825	.	+	.	Parent=Os08t0110100-01
Chr08	irgsp1_rep	three_prime_UTR	531507	531815	.	+	.	Parent=Os08t0110100-01
Chr08	irgsp1_rep	mRNA	536368	539032	.	+	.	ID=Os08t0110200-01;Name=Os08t0110200-01;Locus_id=Os08g0110200;RAP-DB Gene Symbol Synonym(s)=RF6%2C Rf6;RAP-DB Gene Name Synonym(s)=restorer-of-fertility 6;Oryzabase Gene Symbol Synonym(s)=Rf6;Oryzabase Gene Name Synonym(s)=fertility restoration-6%2C RESTORATION OF FERTILITY 6;Note=Pentatricopeptide repeat (PPR) family protein%2C Restoration of fertility of BT-type cytoplasmic male sterility (CMS) plants;Transcript_evidence=AK068841;ORF_evidence=Q6ZC60;GO=Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical domain superfamily (IPR011990),Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J013167F23;Manual Curation=November 7%2C 2019;Literature_PMID=28110460,26578814;Oryzabase=20296;Expression=AK068841;TENOR=Os08t0110200-01;KEGG=Os08t0110200-01;Subcellular location=mitochondrion (GO:0005739)
Chr08	irgsp1_rep	five_prime_UTR	536368	536553	.	+	.	Parent=Os08t0110200-01
Chr08	irgsp1_rep	CDS	536554	538950	.	+	0	Parent=Os08t0110200-01
Chr08	irgsp1_rep	three_prime_UTR	538951	539032	.	+	.	Parent=Os08t0110200-01
Chr08	irgsp1_rep	mRNA	539834	541608	.	-	.	ID=Os08t0110300-01;Name=Os08t0110300-01;Locus_id=Os08g0110300;Note=Longin domain containing protein.;Transcript_evidence=AK067360 (DDBJ%2C Best hit);ORF_evidence=B8BA50 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: integral to membrane (GO:0016021);InterPro=Longin (IPR010908),Longin-like (IPR011012);NIAS_FLcDNA=J013102A15;Expression=AK067360;TENOR=Os08t0110300-01;KEGG=Os08t0110300-01
Chr08	irgsp1_rep	five_prime_UTR	541387	541608	.	-	.	Parent=Os08t0110300-01
Chr08	irgsp1_rep	five_prime_UTR	541020	541209	.	-	.	Parent=Os08t0110300-01
Chr08	irgsp1_rep	CDS	540186	541019	.	-	0	Parent=Os08t0110300-01
Chr08	irgsp1_rep	three_prime_UTR	539834	540185	.	-	.	Parent=Os08t0110300-01
Chr08	irgsp1_rep	mRNA	546844	549396	.	-	.	ID=Os08t0110400-01;Name=Os08t0110400-01;Locus_id=Os08g0110400;Note=Protein of unknown function DUF266%2C plant family protein.;Transcript_evidence=AK100025 (DDBJ%2C Best hit);ORF_evidence=Q01HM5 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: acetylglucosaminyltransferase activity (GO:0008375);InterPro=Glycosyl transferase%2C family 14 (IPR003406);NIAS_FLcDNA=J013146H09;Expression=AK100025;TENOR=Os08t0110400-01;KEGG=Os08t0110400-01
Chr08	irgsp1_rep	five_prime_UTR	549102	549396	.	-	.	Parent=Os08t0110400-01
Chr08	irgsp1_rep	CDS	548520	549101	.	-	0	Parent=Os08t0110400-01
Chr08	irgsp1_rep	CDS	547233	547874	.	-	0	Parent=Os08t0110400-01
Chr08	irgsp1_rep	three_prime_UTR	546844	547232	.	-	.	Parent=Os08t0110400-01
Chr08	irgsp1_rep	mRNA	551574	556921	.	+	.	ID=Os08t0110500-01;Name=Os08t0110500-01;Locus_id=Os08g0110500;RAP-DB Gene Symbol Synonym(s)=PUB15%2C OsPUB15;RAP-DB Gene Name Synonym(s)=PUB15%2C Plant U-Box 15%2C plant U-box-containing protein 15%2C U-box protein 15;Oryzabase Gene Symbol Synonym(s)=OsPUB15%2C PUB15;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 15%2C U-box protein 15;Note=U-box/ARM repeat E3 ligase%2C Stress response%2C Regulation of cell death%2C Blast disease resistance;Transcript_evidence=AK106557,AK102080;ORF_evidence=Q6ZC56;GO=Biological Process: protein ubiquitination (GO:0016567),Molecular Function: ubiquitin-protein transferase activity (GO:0004842),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),U box domain (IPR003613),Armadillo-type fold (IPR016024),Armadillo-like helical (IPR011989),Armadillo (IPR000225);NIAS_FLcDNA=002-109-A01,J033082K05;Manual Curation=February 19%2C 2015;Literature_PMID=21223385,25849162;Oryzabase=17807;TENOR=Os08t0110500-01
Chr08	irgsp1_rep	five_prime_UTR	551574	551684	.	+	.	Parent=Os08t0110500-01
Chr08	irgsp1_rep	five_prime_UTR	553086	553090	.	+	.	Parent=Os08t0110500-01
Chr08	irgsp1_rep	CDS	553091	553360	.	+	0	Parent=Os08t0110500-01
Chr08	irgsp1_rep	CDS	554119	554232	.	+	0	Parent=Os08t0110500-01
Chr08	irgsp1_rep	CDS	554349	556379	.	+	0	Parent=Os08t0110500-01
Chr08	irgsp1_rep	CDS	556501	556560	.	+	0	Parent=Os08t0110500-01
Chr08	irgsp1_rep	three_prime_UTR	556561	556921	.	+	.	Parent=Os08t0110500-01
Chr08	irgsp1_rep	mRNA	556268	556380	.	-	.	ID=Os08t0110550-00;Name=Os08t0110550-00;Locus_id=Os08g0110550;Note=Non-protein coding transcript.;Transcript_evidence=BT084688 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0110550-00
Chr08	irgsp1_rep	exon	556268	556380	.	-	.	Parent=Os08t0110550-00
Chr08	irgsp1_rep	mRNA	557525	558586	.	-	.	ID=Os08t0110600-00;Name=Os08t0110600-00;Locus_id=Os08g0110600;Note=Protein of unknown function DUF1442 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001060821.1 (RefSeq);InterPro=Protein of unknown function DUF1442 (IPR009902);Oryzabase=20459;TENOR=Os08t0110600-00;KEGG=Os08t0110600-00
Chr08	irgsp1_rep	CDS	558515	558586	.	-	0	Parent=Os08t0110600-00
Chr08	irgsp1_rep	CDS	557525	558244	.	-	0	Parent=Os08t0110600-00
Chr08	irgsp1_rep	mRNA	557918	558182	.	+	.	ID=Os08t0110650-00;Name=Os08t0110650-00;Locus_id=Os08g0110650;Note=Non-protein coding transcript.;Transcript_evidence=EU944053 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0110650-00
Chr08	irgsp1_rep	exon	557918	558182	.	+	.	Parent=Os08t0110650-00
Chr08	irgsp1_rep	mRNA	561002	571309	.	-	.	ID=Os08t0110700-01;Name=Os08t0110700-01;Locus_id=Os08g0110700;RAP-DB Gene Symbol Synonym(s)=FSE1;RAP-DB Gene Name Synonym(s)=FLOURY SHRUNKEN ENDOSPERM1;CGSNL Gene Symbol=FSE1;CGSNL Gene Name=FLOURY SHRUNKEN ENDOSPERM 1;Oryzabase Gene Name Synonym(s)=floury shrunken endosperm1;Note=Phospholipase-like protein homologous to phosphatidic acid-preferring phospholipaseA1%2C Glycerolipid metabolism%2C Amyloplast development;Transcript_evidence=AK066813;ORF_evidence=Q6ZC54;GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Alpha/Beta hydrolase fold (IPR029058),DDHD domain (IPR004177);NIAS_FLcDNA=J013087B12;Manual Curation=June 14%2C 2018;Literature_PMID=29717019;Oryzabase=22476;TENOR=Os08t0110700-01;Subcellular location=cytoplasm (GO:0005737), intracellular membrane (GO:0031090)
Chr08	irgsp1_rep	five_prime_UTR	571177	571309	.	-	.	Parent=Os08t0110700-01
Chr08	irgsp1_rep	CDS	570924	571176	.	-	0	Parent=Os08t0110700-01
Chr08	irgsp1_rep	CDS	570427	570527	.	-	2	Parent=Os08t0110700-01
Chr08	irgsp1_rep	CDS	570028	570186	.	-	0	Parent=Os08t0110700-01
Chr08	irgsp1_rep	CDS	569583	569738	.	-	0	Parent=Os08t0110700-01
Chr08	irgsp1_rep	CDS	569170	569241	.	-	0	Parent=Os08t0110700-01
Chr08	irgsp1_rep	CDS	568948	569085	.	-	0	Parent=Os08t0110700-01
Chr08	irgsp1_rep	CDS	568106	568156	.	-	0	Parent=Os08t0110700-01
Chr08	irgsp1_rep	CDS	567368	567538	.	-	0	Parent=Os08t0110700-01
Chr08	irgsp1_rep	CDS	566503	566652	.	-	0	Parent=Os08t0110700-01
Chr08	irgsp1_rep	CDS	565362	565427	.	-	0	Parent=Os08t0110700-01
Chr08	irgsp1_rep	CDS	564733	565260	.	-	0	Parent=Os08t0110700-01
Chr08	irgsp1_rep	CDS	564415	564496	.	-	0	Parent=Os08t0110700-01
Chr08	irgsp1_rep	CDS	564219	564331	.	-	2	Parent=Os08t0110700-01
Chr08	irgsp1_rep	CDS	564066	564138	.	-	0	Parent=Os08t0110700-01
Chr08	irgsp1_rep	CDS	563169	563271	.	-	2	Parent=Os08t0110700-01
Chr08	irgsp1_rep	CDS	562949	563042	.	-	1	Parent=Os08t0110700-01
Chr08	irgsp1_rep	CDS	562779	562841	.	-	0	Parent=Os08t0110700-01
Chr08	irgsp1_rep	CDS	562570	562618	.	-	0	Parent=Os08t0110700-01
Chr08	irgsp1_rep	CDS	562386	562486	.	-	2	Parent=Os08t0110700-01
Chr08	irgsp1_rep	CDS	561731	561777	.	-	0	Parent=Os08t0110700-01
Chr08	irgsp1_rep	CDS	561401	561644	.	-	1	Parent=Os08t0110700-01
Chr08	irgsp1_rep	three_prime_UTR	561399	561400	.	-	.	Parent=Os08t0110700-01
Chr08	irgsp1_rep	three_prime_UTR	561002	561244	.	-	.	Parent=Os08t0110700-01
Chr08	irgsp1_rep	mRNA	572757	577304	.	+	.	ID=Os08t0110800-01;Name=Os08t0110800-01;Locus_id=Os08g0110800;Note=K Homology%2C type 1%2C subgroup domain containing protein.;Transcript_evidence=AK099025 (DDBJ%2C Best hit);ORF_evidence=A3BNZ2 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=K Homology (IPR004087),K Homology%2C type 1 (IPR004088),K Homology%2C type 1%2C subgroup (IPR018111);NIAS_FLcDNA=J013124E19;Expression=AK099025;TENOR=Os08t0110800-01;KEGG=Os08t0110800-01
Chr08	irgsp1_rep	five_prime_UTR	572757	572855	.	+	.	Parent=Os08t0110800-01
Chr08	irgsp1_rep	CDS	572856	573093	.	+	0	Parent=Os08t0110800-01
Chr08	irgsp1_rep	CDS	573251	573498	.	+	2	Parent=Os08t0110800-01
Chr08	irgsp1_rep	CDS	573694	573879	.	+	0	Parent=Os08t0110800-01
Chr08	irgsp1_rep	CDS	573986	574081	.	+	0	Parent=Os08t0110800-01
Chr08	irgsp1_rep	CDS	574183	574254	.	+	0	Parent=Os08t0110800-01
Chr08	irgsp1_rep	CDS	574337	574462	.	+	0	Parent=Os08t0110800-01
Chr08	irgsp1_rep	three_prime_UTR	574463	577304	.	+	.	Parent=Os08t0110800-01
Chr08	irgsp1_rep	mRNA	572757	576103	.	+	.	ID=Os08t0110800-02;Name=Os08t0110800-02;Locus_id=Os08g0110800;Note=Hypothetical conserved gene.;Transcript_evidence=AK068995 (DDBJ%2C Best hit);ORF_evidence=A3BNZ2 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=K Homology (IPR004087),K Homology%2C type 1 (IPR004088),K Homology%2C type 1%2C subgroup (IPR018111);NIAS_FLcDNA=J013169C15;Expression=AK068995;TENOR=Os08t0110800-02;KEGG=Os08t0110800-02
Chr08	irgsp1_rep	five_prime_UTR	572757	572855	.	+	.	Parent=Os08t0110800-02
Chr08	irgsp1_rep	CDS	572856	573093	.	+	0	Parent=Os08t0110800-02
Chr08	irgsp1_rep	CDS	573251	573498	.	+	2	Parent=Os08t0110800-02
Chr08	irgsp1_rep	CDS	573694	573900	.	+	0	Parent=Os08t0110800-02
Chr08	irgsp1_rep	three_prime_UTR	573901	574081	.	+	.	Parent=Os08t0110800-02
Chr08	irgsp1_rep	three_prime_UTR	574183	574254	.	+	.	Parent=Os08t0110800-02
Chr08	irgsp1_rep	three_prime_UTR	574337	576103	.	+	.	Parent=Os08t0110800-02
Chr08	irgsp1_rep	mRNA	572803	578279	.	+	.	ID=Os08t0110800-03;Name=Os08t0110800-03;Locus_id=Os08g0110800;Note=K Homology%2C type 1%2C subgroup domain containing protein.;Transcript_evidence=AK120061 (DDBJ%2C Best hit);ORF_evidence=A3BNZ2 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=K Homology (IPR004087),K Homology%2C type 1 (IPR004088),K Homology%2C type 1%2C subgroup (IPR018111);NIAS_FLcDNA=J013001I23;TENOR=Os08t0110800-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	572803	572855	.	+	.	Parent=Os08t0110800-03
Chr08	irgsp1_rep	CDS	572856	573093	.	+	0	Parent=Os08t0110800-03
Chr08	irgsp1_rep	CDS	573251	573498	.	+	2	Parent=Os08t0110800-03
Chr08	irgsp1_rep	CDS	573694	573879	.	+	0	Parent=Os08t0110800-03
Chr08	irgsp1_rep	CDS	573986	574081	.	+	0	Parent=Os08t0110800-03
Chr08	irgsp1_rep	CDS	574183	574254	.	+	0	Parent=Os08t0110800-03
Chr08	irgsp1_rep	CDS	574337	574462	.	+	0	Parent=Os08t0110800-03
Chr08	irgsp1_rep	three_prime_UTR	574463	578279	.	+	.	Parent=Os08t0110800-03
Chr08	irgsp1_rep	mRNA	574335	578313	.	+	.	ID=Os08t0110800-04;Name=Os08t0110800-04;Locus_id=Os08g0110800;Note=Conserved hypothetical protein.;Transcript_evidence=AK061846 (DDBJ%2C Best hit);ORF_evidence=A3BNZ2 (UniProt);NIAS_FLcDNA=001-040-F02;TENOR=Os08t0110800-04;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	574335	574336	.	+	.	Parent=Os08t0110800-04
Chr08	irgsp1_rep	CDS	574337	574453	.	+	0	Parent=Os08t0110800-04
Chr08	irgsp1_rep	CDS	576878	578023	.	+	0	Parent=Os08t0110800-04
Chr08	irgsp1_rep	three_prime_UTR	578024	578313	.	+	.	Parent=Os08t0110800-04
Chr08	irgsp1_rep	mRNA	575029	577304	.	+	.	ID=Os08t0110800-05;Name=Os08t0110800-05;Locus_id=Os08g0110800;Note=Hypothetical conserved gene.;Transcript_evidence=AK070714 (DDBJ%2C Best hit);ORF_evidence=A3BNZ2 (UniProt);NIAS_FLcDNA=J023061F15;TENOR=Os08t0110800-05
Chr08	irgsp1_rep	five_prime_UTR	575029	576799	.	+	.	Parent=Os08t0110800-05
Chr08	irgsp1_rep	CDS	576800	577304	.	+	0	Parent=Os08t0110800-05
Chr08	irgsp1_rep	mRNA	580366	586456	.	-	.	ID=Os08t0111200-01;Name=Os08t0111200-01;Locus_id=Os08g0111200;Note=Beta-glucosidase%2C GBA2 type domain containing protein.;Transcript_evidence=AK072300 (DDBJ%2C Best hit);ORF_evidence=B9FYQ4 (UniProt);GO=Biological Process: sphingolipid metabolic process (GO:0006665),Biological Process: glucosylceramide catabolic process (GO:0006680),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: catalytic activity (GO:0003824),Molecular Function: glucosylceramidase activity (GO:0004348);InterPro=Glucosylceramidase (IPR006775),Six-hairpin glycosidase-like (IPR008928),Six-hairpin glycosidase (IPR012341),Beta-glucosidase%2C GBA2 type (IPR014551),Beta-glucosidase%2C GBA2 type%2C N-terminal (IPR024462);NIAS_FLcDNA=J023020B06;Expression=AK072300;TENOR=Os08t0111200-01;KEGG=Os08t0111200-01
Chr08	irgsp1_rep	five_prime_UTR	586293	586456	.	-	.	Parent=Os08t0111200-01
Chr08	irgsp1_rep	five_prime_UTR	586030	586065	.	-	.	Parent=Os08t0111200-01
Chr08	irgsp1_rep	CDS	586000	586029	.	-	0	Parent=Os08t0111200-01
Chr08	irgsp1_rep	CDS	585653	585769	.	-	0	Parent=Os08t0111200-01
Chr08	irgsp1_rep	CDS	585259	585315	.	-	0	Parent=Os08t0111200-01
Chr08	irgsp1_rep	CDS	585073	585143	.	-	0	Parent=Os08t0111200-01
Chr08	irgsp1_rep	CDS	584812	584911	.	-	1	Parent=Os08t0111200-01
Chr08	irgsp1_rep	CDS	584645	584715	.	-	0	Parent=Os08t0111200-01
Chr08	irgsp1_rep	CDS	584464	584564	.	-	1	Parent=Os08t0111200-01
Chr08	irgsp1_rep	CDS	584247	584350	.	-	2	Parent=Os08t0111200-01
Chr08	irgsp1_rep	CDS	584092	584145	.	-	0	Parent=Os08t0111200-01
Chr08	irgsp1_rep	CDS	583948	584003	.	-	0	Parent=Os08t0111200-01
Chr08	irgsp1_rep	CDS	583577	583724	.	-	1	Parent=Os08t0111200-01
Chr08	irgsp1_rep	CDS	583308	583495	.	-	0	Parent=Os08t0111200-01
Chr08	irgsp1_rep	CDS	583101	583171	.	-	1	Parent=Os08t0111200-01
Chr08	irgsp1_rep	CDS	582928	583000	.	-	2	Parent=Os08t0111200-01
Chr08	irgsp1_rep	CDS	582668	582729	.	-	1	Parent=Os08t0111200-01
Chr08	irgsp1_rep	CDS	582141	582538	.	-	2	Parent=Os08t0111200-01
Chr08	irgsp1_rep	CDS	580466	581551	.	-	0	Parent=Os08t0111200-01
Chr08	irgsp1_rep	three_prime_UTR	580366	580465	.	-	.	Parent=Os08t0111200-01
Chr08	irgsp1_rep	mRNA	580320	581527	.	-	.	ID=Os08t0111200-02;Name=Os08t0111200-02;Locus_id=Os08g0111200;Note=Similar to predicted protein.;Transcript_evidence=AK073257 (DDBJ%2C Best hit);ORF_evidence=B9FYQ4 (UniProt);GO=Biological Process: sphingolipid metabolic process (GO:0006665),Cellular Component: integral to membrane (GO:0016021),Molecular Function: catalytic activity (GO:0003824),Molecular Function: glucosylceramidase activity (GO:0004348);InterPro=Glucosylceramidase (IPR006775),Six-hairpin glycosidase-like (IPR008928),Six-hairpin glycosidase (IPR012341);NIAS_FLcDNA=J033022F02;Expression=AK073257;TENOR=Os08t0111200-02;KEGG=Os08t0111200-02
Chr08	irgsp1_rep	CDS	580466	581527	.	-	0	Parent=Os08t0111200-02
Chr08	irgsp1_rep	three_prime_UTR	580320	580465	.	-	.	Parent=Os08t0111200-02
Chr08	irgsp1_rep	mRNA	594453	598038	.	-	.	ID=Os08t0111300-01;Name=Os08t0111300-01;Locus_id=Os08g0111300;Note=Transferase family protein.;Transcript_evidence=AK110905 (DDBJ%2C Best hit);ORF_evidence=A2YQK2 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=002-173-B07;Expression=AK110905;TENOR=Os08t0111300-01;KEGG=Os08t0111300-01
Chr08	irgsp1_rep	five_prime_UTR	598001	598038	.	-	.	Parent=Os08t0111300-01
Chr08	irgsp1_rep	CDS	596561	598000	.	-	0	Parent=Os08t0111300-01
Chr08	irgsp1_rep	three_prime_UTR	596533	596560	.	-	.	Parent=Os08t0111300-01
Chr08	irgsp1_rep	three_prime_UTR	594453	594781	.	-	.	Parent=Os08t0111300-01
Chr08	irgsp1_rep	mRNA	610522	612123	.	-	.	ID=Os08t0111500-00;Name=Os08t0111500-00;Locus_id=Os08g0111500;Note=Hypothetical conserved gene.;Transcript_evidence=AK366235 (DDBJ);ORF_evidence=NP_001060826.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os08t0111500-00;KEGG=Os08t0111500-00
Chr08	irgsp1_rep	CDS	610522	612123	.	-	0	Parent=Os08t0111500-00
Chr08	irgsp1_rep	mRNA	632775	634197	.	-	.	ID=Os08t0111800-00;Name=Os08t0111800-00;Locus_id=Os08g0111800;Note=Transferase family protein.;Transcript_evidence=AK358786 (DDBJ);ORF_evidence=NP_001060827.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os08t0111800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	634170	634197	.	-	.	Parent=Os08t0111800-00
Chr08	irgsp1_rep	CDS	632775	634169	.	-	0	Parent=Os08t0111800-00
Chr08	irgsp1_rep	mRNA	636209	643929	.	+	.	ID=Os08t0112000-00;Name=Os08t0112000-00;Locus_id=Os08g0112000;Note=Hypothetical conserved gene.;Transcript_evidence=AK062290 (DDBJ%2C Secondary hit);ORF_evidence=Q851V4 (UniProt);InterPro=DNA helicase PIF1%2C ATP-dependent (IPR010285);Expression=AK062290;TENOR=Os08t0112000-00;KEGG=Os08t0112000-00
Chr08	irgsp1_rep	five_prime_UTR	636209	636441	.	+	.	Parent=Os08t0112000-00
Chr08	irgsp1_rep	five_prime_UTR	636462	636701	.	+	.	Parent=Os08t0112000-00
Chr08	irgsp1_rep	CDS	636702	636750	.	+	0	Parent=Os08t0112000-00
Chr08	irgsp1_rep	CDS	636849	636868	.	+	2	Parent=Os08t0112000-00
Chr08	irgsp1_rep	CDS	642835	643131	.	+	0	Parent=Os08t0112000-00
Chr08	irgsp1_rep	three_prime_UTR	643132	643929	.	+	.	Parent=Os08t0112000-00
Chr08	irgsp1_rep	mRNA	655771	657391	.	-	.	ID=Os08t0112300-01;Name=Os08t0112300-01;Locus_id=Os08g0112300;Note=Transferase domain containing protein.;Transcript_evidence=AK070381 (DDBJ%2C Best hit);ORF_evidence=B8BA57 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J023054J24;TENOR=Os08t0112300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	657391	657391	.	-	.	Parent=Os08t0112300-01
Chr08	irgsp1_rep	CDS	655978	657390	.	-	0	Parent=Os08t0112300-01
Chr08	irgsp1_rep	three_prime_UTR	655771	655977	.	-	.	Parent=Os08t0112300-01
Chr08	irgsp1_rep	mRNA	658548	661608	.	-	.	ID=Os08t0112400-01;Name=Os08t0112400-01;Locus_id=Os08g0112400;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK071947 (DDBJ%2C Best hit);ORF_evidence=B8BA57 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013088P03;Expression=AK071947;TENOR=Os08t0112400-01;KEGG=Os08t0112400-01
Chr08	irgsp1_rep	five_prime_UTR	661460	661608	.	-	.	Parent=Os08t0112400-01
Chr08	irgsp1_rep	CDS	659456	661459	.	-	0	Parent=Os08t0112400-01
Chr08	irgsp1_rep	three_prime_UTR	659375	659455	.	-	.	Parent=Os08t0112400-01
Chr08	irgsp1_rep	three_prime_UTR	659089	659176	.	-	.	Parent=Os08t0112400-01
Chr08	irgsp1_rep	three_prime_UTR	658548	658962	.	-	.	Parent=Os08t0112400-01
Chr08	irgsp1_rep	mRNA	658651	659299	.	+	.	ID=Os08t0112450-01;Name=Os08t0112450-01;Locus_id=Os08g0112450;Note=Non-protein coding transcript.;Transcript_evidence=AK240715 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J043022M08;TENOR=Os08t0112450-01
Chr08	irgsp1_rep	exon	658651	659299	.	+	.	Parent=Os08t0112450-01
Chr08	irgsp1_rep	mRNA	662198	667531	.	-	.	ID=Os08t0112500-01;Name=Os08t0112500-01;Locus_id=Os08g0112500;Oryzabase Gene Symbol Synonym(s)=CKL10%2C Orysa%3BCKL10%2C OsCKL:10%2C CKL:10;Oryzabase Gene Name Synonym(s)=CDK-LIKE 10%2C cyclin-dependent kinase-like 10;Note=Similar to Cyclin-dependent protein kinase-like protein.;Transcript_evidence=AK072696 (DDBJ%2C Best hit);ORF_evidence=NP_175713.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023138G06;Oryzabase=13308;Expression=AK072696;TENOR=Os08t0112500-01;KEGG=Os08t0112500-01
Chr08	irgsp1_rep	five_prime_UTR	667059	667531	.	-	.	Parent=Os08t0112500-01
Chr08	irgsp1_rep	CDS	666495	667058	.	-	0	Parent=Os08t0112500-01
Chr08	irgsp1_rep	CDS	665875	666159	.	-	0	Parent=Os08t0112500-01
Chr08	irgsp1_rep	CDS	665475	665792	.	-	0	Parent=Os08t0112500-01
Chr08	irgsp1_rep	CDS	664751	664978	.	-	0	Parent=Os08t0112500-01
Chr08	irgsp1_rep	CDS	664264	664364	.	-	0	Parent=Os08t0112500-01
Chr08	irgsp1_rep	CDS	664065	664152	.	-	1	Parent=Os08t0112500-01
Chr08	irgsp1_rep	CDS	663184	663639	.	-	0	Parent=Os08t0112500-01
Chr08	irgsp1_rep	CDS	662552	662758	.	-	0	Parent=Os08t0112500-01
Chr08	irgsp1_rep	three_prime_UTR	662198	662551	.	-	.	Parent=Os08t0112500-01
Chr08	irgsp1_rep	mRNA	662169	664810	.	-	.	ID=Os08t0112500-02;Name=Os08t0112500-02;Locus_id=Os08g0112500;Oryzabase Gene Symbol Synonym(s)=CKL10%2C Orysa%3BCKL10%2C OsCKL:10%2C CKL:10;Oryzabase Gene Name Synonym(s)=CDK-LIKE 10%2C cyclin-dependent kinase-like 10;Note=Hypothetical conserved gene.;Transcript_evidence=AK104081 (DDBJ%2C Best hit);ORF_evidence=B8BA58 (UniProt);NIAS_FLcDNA=001-029-B08;Oryzabase=13308;Expression=AK104081;TENOR=Os08t0112500-02;KEGG=Os08t0112500-02
Chr08	irgsp1_rep	CDS	664751	664810	.	-	0	Parent=Os08t0112500-02
Chr08	irgsp1_rep	CDS	664264	664364	.	-	0	Parent=Os08t0112500-02
Chr08	irgsp1_rep	CDS	664065	664152	.	-	1	Parent=Os08t0112500-02
Chr08	irgsp1_rep	CDS	663184	663639	.	-	0	Parent=Os08t0112500-02
Chr08	irgsp1_rep	CDS	662552	662758	.	-	0	Parent=Os08t0112500-02
Chr08	irgsp1_rep	three_prime_UTR	662169	662551	.	-	.	Parent=Os08t0112500-02
Chr08	irgsp1_rep	mRNA	671182	671336	.	-	.	ID=Os08t0112566-00;Name=Os08t0112566-00;Locus_id=Os08g0112566;Note=Non-protein coding transcript.;Transcript_evidence=EU943426 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0112566-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	exon	671182	671336	.	-	.	Parent=Os08t0112566-00
Chr08	irgsp1_rep	mRNA	671625	674727	.	+	.	ID=Os08t0112600-01;Name=Os08t0112600-01;Locus_id=Os08g0112600;Note=Conserved hypothetical protein.;Transcript_evidence=AK070703 (DDBJ%2C Best hit),AK059664 (DDBJ%2C Best hit);ORF_evidence=A2YQK7 (UniProt);NIAS_FLcDNA=J023058O18,001-031-E05;TENOR=Os08t0112600-01
Chr08	irgsp1_rep	five_prime_UTR	671625	671677	.	+	.	Parent=Os08t0112600-01
Chr08	irgsp1_rep	CDS	671678	671923	.	+	0	Parent=Os08t0112600-01
Chr08	irgsp1_rep	CDS	673544	673658	.	+	0	Parent=Os08t0112600-01
Chr08	irgsp1_rep	CDS	674248	674318	.	+	2	Parent=Os08t0112600-01
Chr08	irgsp1_rep	three_prime_UTR	674319	674727	.	+	.	Parent=Os08t0112600-01
Chr08	irgsp1_rep	mRNA	679358	681703	.	+	.	ID=Os08t0112700-01;Name=Os08t0112700-01;Locus_id=Os08g0112700;RAP-DB Gene Symbol Synonym(s)=MADS26%2C OsMADS26%2C FDRMADS3%2C RMADS220;RAP-DB Gene Name Synonym(s)=MADS BOX GENE 26%2C MADS box gene26%2C MADS-box transcription factor 26;CGSNL Gene Symbol=MADS26;CGSNL Gene Name=MADS BOX GENE 26;Oryzabase Gene Symbol Synonym(s)=OsMADS26%2C FDRMADS3%2C RMADS220;Oryzabase Gene Name Synonym(s)=MADS box gene26%2C MADS-box transcription factor 26;Note=MADS-box transcription factor%2C Regulator of both biotic and abiotic stress responses;Transcript_evidence=AK069122,AB003326;ORF_evidence=Q0J8G8;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700),Molecular Function: protein dimerization activity (GO:0046983),Cellular Component: nucleus (GO:0005634);InterPro=Transcription factor%2C MADS-box (IPR002100),Transcription factor%2C K-box (IPR002487);NIAS_FLcDNA=J023004P21;Manual Curation=December 17%2C 2015;Literature_PMID=26424158,10382970;Oryzabase=3092;Expression=AK069122;TENOR=Os08t0112700-01;KEGG=Os08t0112700-01
Chr08	irgsp1_rep	five_prime_UTR	679358	679617	.	+	.	Parent=Os08t0112700-01
Chr08	irgsp1_rep	CDS	679618	679799	.	+	0	Parent=Os08t0112700-01
Chr08	irgsp1_rep	CDS	679893	679968	.	+	1	Parent=Os08t0112700-01
Chr08	irgsp1_rep	CDS	680390	680451	.	+	0	Parent=Os08t0112700-01
Chr08	irgsp1_rep	CDS	680851	680953	.	+	1	Parent=Os08t0112700-01
Chr08	irgsp1_rep	CDS	681027	681066	.	+	0	Parent=Os08t0112700-01
Chr08	irgsp1_rep	CDS	681156	681199	.	+	2	Parent=Os08t0112700-01
Chr08	irgsp1_rep	CDS	681309	681470	.	+	0	Parent=Os08t0112700-01
Chr08	irgsp1_rep	three_prime_UTR	681471	681703	.	+	.	Parent=Os08t0112700-01
Chr08	irgsp1_rep	mRNA	682645	684136	.	-	.	ID=Os08t0112800-01;Name=Os08t0112800-01;Locus_id=Os08g0112800;CGSNL Gene Symbol=SDH6;CGSNL Gene Name=SUCCINATE DEHYDROGENASE SUBUNIT 6;Oryzabase Gene Name Synonym(s)=SUCCINATE:UBIQUINONE OXIDOREDUCTASE;Note=Rickettsia 17 kDa surface antigen family protein.;Transcript_evidence=AK121176 (DDBJ%2C Best hit);ORF_evidence=A2YQL0 (UniProt);NIAS_FLcDNA=J023083C18;Oryzabase=8752;Expression=AK121176;TENOR=Os08t0112800-01;KEGG=Os08t0112800-01
Chr08	irgsp1_rep	five_prime_UTR	684049	684136	.	-	.	Parent=Os08t0112800-01
Chr08	irgsp1_rep	CDS	683884	684048	.	-	0	Parent=Os08t0112800-01
Chr08	irgsp1_rep	CDS	683681	683783	.	-	0	Parent=Os08t0112800-01
Chr08	irgsp1_rep	CDS	683449	683592	.	-	2	Parent=Os08t0112800-01
Chr08	irgsp1_rep	CDS	682957	682973	.	-	2	Parent=Os08t0112800-01
Chr08	irgsp1_rep	three_prime_UTR	682645	682956	.	-	.	Parent=Os08t0112800-01
Chr08	irgsp1_rep	mRNA	686288	693733	.	+	.	ID=Os08t0112900-01;Name=Os08t0112900-01;Locus_id=Os08g0112900;CGSNL Gene Symbol=GELP95;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 95;Oryzabase Gene Symbol Synonym(s)=OsGELP95;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 95;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK069672 (DDBJ%2C Best hit),AK105876 (DDBJ%2C Best hit);ORF_evidence=NP_974125.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=J023027A20,001-204-B10;Oryzabase=11045;Expression=AK069672;TENOR=Os08t0112900-01;KEGG=Os08t0112900-01
Chr08	irgsp1_rep	five_prime_UTR	686288	686309	.	+	.	Parent=Os08t0112900-01
Chr08	irgsp1_rep	CDS	686310	686610	.	+	0	Parent=Os08t0112900-01
Chr08	irgsp1_rep	CDS	692555	692682	.	+	2	Parent=Os08t0112900-01
Chr08	irgsp1_rep	CDS	692787	693029	.	+	0	Parent=Os08t0112900-01
Chr08	irgsp1_rep	CDS	693102	693575	.	+	0	Parent=Os08t0112900-01
Chr08	irgsp1_rep	three_prime_UTR	693576	693733	.	+	.	Parent=Os08t0112900-01
Chr08	irgsp1_rep	mRNA	697270	698157	.	-	.	ID=Os08t0112950-00;Name=Os08t0112950-00;Locus_id=Os08g0112950;Note=Hypothetical protein.;Transcript_evidence=tplb0038a01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0112950-00
Chr08	irgsp1_rep	five_prime_UTR	697643	698157	.	-	.	Parent=Os08t0112950-00
Chr08	irgsp1_rep	CDS	697331	697642	.	-	0	Parent=Os08t0112950-00
Chr08	irgsp1_rep	three_prime_UTR	697270	697330	.	-	.	Parent=Os08t0112950-00
Chr08	irgsp1_rep	mRNA	697180	698576	.	+	.	ID=Os08t0113000-01;Name=Os08t0113000-01;Locus_id=Os08g0113000;Oryzabase Gene Symbol Synonym(s)=prx117;Oryzabase Gene Name Synonym(s)=class III peroxidase 117%2C Putative peroxidase 47%2C Peroxidase 47;Note=Similar to Peroxidase 47 precursor (EC 1.11.1.7) (Atperox P47) (ATP32).;Transcript_evidence=AK069503 (DDBJ%2C Best hit);ORF_evidence=Q5U1H6 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J023019J18;Oryzabase=14634;Expression=AK069503;TENOR=Os08t0113000-01;KEGG=Os08t0113000-01 (EC:1.11.1.7)
Chr08	irgsp1_rep	five_prime_UTR	697180	697238	.	+	.	Parent=Os08t0113000-01
Chr08	irgsp1_rep	CDS	697239	698189	.	+	0	Parent=Os08t0113000-01
Chr08	irgsp1_rep	three_prime_UTR	698190	698576	.	+	.	Parent=Os08t0113000-01
Chr08	irgsp1_rep	mRNA	701252	703992	.	+	.	ID=Os08t0113100-01;Name=Os08t0113100-01;Locus_id=Os08g0113100;Oryzabase Gene Symbol Synonym(s)=OsFKII%2C OsFK1%2C FKII%2C FK1;Oryzabase Gene Name Synonym(s)=Fructokinase%2C fructokinase II%2C Fructokinase 1%2C Fructokinase-2;Note=Similar to Fructokinase (Fragment).;Transcript_evidence=AK070120 (DDBJ%2C Best hit),AK099353 (DDBJ%2C Best hit);ORF_evidence=Q0J8G4 (UniProt);GO=Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Carbohydrate/puine kinase%2C PfkB%2C conserved site (IPR002173),Carbohydrate/purine kinase (IPR011611);NIAS_FLcDNA=J023041C07,J033041J08;Oryzabase=12466;TENOR=Os08t0113100-01
Chr08	irgsp1_rep	five_prime_UTR	701252	701338	.	+	.	Parent=Os08t0113100-01
Chr08	irgsp1_rep	CDS	701339	701551	.	+	0	Parent=Os08t0113100-01
Chr08	irgsp1_rep	CDS	702796	703458	.	+	0	Parent=Os08t0113100-01
Chr08	irgsp1_rep	CDS	703535	703669	.	+	0	Parent=Os08t0113100-01
Chr08	irgsp1_rep	three_prime_UTR	703670	703992	.	+	.	Parent=Os08t0113100-01
Chr08	irgsp1_rep	mRNA	701520	703998	.	+	.	ID=Os08t0113100-02;Name=Os08t0113100-02;Locus_id=Os08g0113100;Oryzabase Gene Symbol Synonym(s)=OsFKII%2C OsFK1%2C FKII%2C FK1;Oryzabase Gene Name Synonym(s)=Fructokinase%2C fructokinase II%2C Fructokinase 1%2C Fructokinase-2;Note=Similar to cDNA clone:J023041C07%2C full insert sequence.;Transcript_evidence=AK061391 (DDBJ%2C Best hit);ORF_evidence=B7EHD2 (UniProt);InterPro=Carbohydrate/purine kinase (IPR011611);NIAS_FLcDNA=006-305-C10;Oryzabase=12466;Expression=AK061391;TENOR=Os08t0113100-02;KEGG=Os08t0113100-02 (EC:2.7.1.4)
Chr08	irgsp1_rep	five_prime_UTR	701520	701521	.	+	.	Parent=Os08t0113100-02
Chr08	irgsp1_rep	CDS	701522	701551	.	+	0	Parent=Os08t0113100-02
Chr08	irgsp1_rep	CDS	702796	703458	.	+	0	Parent=Os08t0113100-02
Chr08	irgsp1_rep	CDS	703535	703669	.	+	0	Parent=Os08t0113100-02
Chr08	irgsp1_rep	three_prime_UTR	703670	703998	.	+	.	Parent=Os08t0113100-02
Chr08	irgsp1_rep	mRNA	701338	703670	.	-	.	ID=Os08t0113150-00;Name=Os08t0113150-00;Locus_id=Os08g0113150;Note=Hypothetical protein.;Transcript_evidence=BT016469 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0113150-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	703538	703670	.	-	.	Parent=Os08t0113150-00
Chr08	irgsp1_rep	five_prime_UTR	703452	703463	.	-	.	Parent=Os08t0113150-00
Chr08	irgsp1_rep	CDS	703113	703451	.	-	0	Parent=Os08t0113150-00
Chr08	irgsp1_rep	three_prime_UTR	702975	703112	.	-	.	Parent=Os08t0113150-00
Chr08	irgsp1_rep	three_prime_UTR	701338	701521	.	-	.	Parent=Os08t0113150-00
Chr08	irgsp1_rep	mRNA	704559	713864	.	-	.	ID=Os08t0113200-01;Name=Os08t0113200-01;Locus_id=Os08g0113200;Oryzabase Gene Symbol Synonym(s)=BIP113;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 113%2C BRI1-interacting protein 113%2C brassinosteroid receptor kinase-interacting protein 113;Note=RNA-processing protein%2C HAT helix domain containing protein.;Transcript_evidence=AK102710 (DDBJ%2C Best hit);ORF_evidence=A2YQL5 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Biological Process: mRNA processing (GO:0006397),Cellular Component: intracellular (GO:0005622),Cellular Component: nucleus (GO:0005634),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: binding (GO:0005488);InterPro=RNA recognition motif domain (IPR000504),RNA-processing protein%2C HAT helix (IPR003107),Suppressor of forked (IPR008847),Tetratricopeptide-like helical (IPR011990),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033104J20;Oryzabase=13690;Expression=AK102710;TENOR=Os08t0113200-01;KEGG=Os08t0113200-01
Chr08	irgsp1_rep	five_prime_UTR	713811	713864	.	-	.	Parent=Os08t0113200-01
Chr08	irgsp1_rep	CDS	713556	713810	.	-	0	Parent=Os08t0113200-01
Chr08	irgsp1_rep	CDS	713075	713202	.	-	0	Parent=Os08t0113200-01
Chr08	irgsp1_rep	CDS	712886	712943	.	-	1	Parent=Os08t0113200-01
Chr08	irgsp1_rep	CDS	712313	712798	.	-	0	Parent=Os08t0113200-01
Chr08	irgsp1_rep	CDS	711485	711619	.	-	0	Parent=Os08t0113200-01
Chr08	irgsp1_rep	CDS	711264	711389	.	-	0	Parent=Os08t0113200-01
Chr08	irgsp1_rep	CDS	710601	710645	.	-	0	Parent=Os08t0113200-01
Chr08	irgsp1_rep	CDS	710251	710340	.	-	0	Parent=Os08t0113200-01
Chr08	irgsp1_rep	CDS	710040	710179	.	-	0	Parent=Os08t0113200-01
Chr08	irgsp1_rep	CDS	709833	709956	.	-	1	Parent=Os08t0113200-01
Chr08	irgsp1_rep	CDS	709102	709176	.	-	0	Parent=Os08t0113200-01
Chr08	irgsp1_rep	CDS	708110	708496	.	-	0	Parent=Os08t0113200-01
Chr08	irgsp1_rep	CDS	707933	708025	.	-	0	Parent=Os08t0113200-01
Chr08	irgsp1_rep	CDS	707459	707615	.	-	0	Parent=Os08t0113200-01
Chr08	irgsp1_rep	CDS	706790	707007	.	-	2	Parent=Os08t0113200-01
Chr08	irgsp1_rep	three_prime_UTR	706780	706789	.	-	.	Parent=Os08t0113200-01
Chr08	irgsp1_rep	three_prime_UTR	704559	705181	.	-	.	Parent=Os08t0113200-01
Chr08	irgsp1_rep	mRNA	715643	720168	.	+	.	ID=Os08t0113300-01;Name=Os08t0113300-01;Locus_id=Os08g0113300;Oryzabase Gene Symbol Synonym(s)=OsPUB68;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 68%2C U-box protein 68;Note=Similar to STIP1 homology and U box-containing protein 1.;Transcript_evidence=AK106523 (DDBJ%2C Best hit);ORF_evidence=B4FVL5 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=002-107-D07;Oryzabase=17859;TENOR=Os08t0113300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	715643	715723	.	+	.	Parent=Os08t0113300-01
Chr08	irgsp1_rep	CDS	715724	715840	.	+	0	Parent=Os08t0113300-01
Chr08	irgsp1_rep	CDS	716663	716730	.	+	0	Parent=Os08t0113300-01
Chr08	irgsp1_rep	CDS	716837	716900	.	+	1	Parent=Os08t0113300-01
Chr08	irgsp1_rep	CDS	718760	718831	.	+	0	Parent=Os08t0113300-01
Chr08	irgsp1_rep	CDS	719168	719301	.	+	0	Parent=Os08t0113300-01
Chr08	irgsp1_rep	CDS	719387	719570	.	+	1	Parent=Os08t0113300-01
Chr08	irgsp1_rep	three_prime_UTR	719571	719707	.	+	.	Parent=Os08t0113300-01
Chr08	irgsp1_rep	three_prime_UTR	719790	720168	.	+	.	Parent=Os08t0113300-01
Chr08	irgsp1_rep	mRNA	720518	721865	.	-	.	ID=Os08t0113400-01;Name=Os08t0113400-01;Locus_id=Os08g0113400;Note=Methyltransferase type 11 domain containing protein.;Transcript_evidence=AK111245 (DDBJ%2C Best hit);ORF_evidence=B9FYR3 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Methyltransferase type 11 (IPR013216);NIAS_FLcDNA=002-180-D05;Expression=AK111245;TENOR=Os08t0113400-01;KEGG=Os08t0113400-01
Chr08	irgsp1_rep	five_prime_UTR	721851	721865	.	-	.	Parent=Os08t0113400-01
Chr08	irgsp1_rep	CDS	720591	721850	.	-	0	Parent=Os08t0113400-01
Chr08	irgsp1_rep	three_prime_UTR	720518	720590	.	-	.	Parent=Os08t0113400-01
Chr08	irgsp1_rep	mRNA	732371	733005	.	-	.	ID=Os08t0113501-00;Name=Os08t0113501-00;Locus_id=Os08g0113501;Note=Hypothetical protein.;Transcript_evidence=FP093663 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0113501-00
Chr08	irgsp1_rep	five_prime_UTR	732999	733005	.	-	.	Parent=Os08t0113501-00
Chr08	irgsp1_rep	CDS	732762	732998	.	-	0	Parent=Os08t0113501-00
Chr08	irgsp1_rep	three_prime_UTR	732716	732761	.	-	.	Parent=Os08t0113501-00
Chr08	irgsp1_rep	three_prime_UTR	732371	732638	.	-	.	Parent=Os08t0113501-00
Chr08	irgsp1_rep	mRNA	734623	735664	.	+	.	ID=Os08t0113600-01;Name=Os08t0113600-01;Locus_id=Os08g0113600;Note=Hypothetical protein.;Transcript_evidence=AK061571 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=006-311-F11;Expression=AK061571;TENOR=Os08t0113600-01;KEGG=Os08t0113600-01
Chr08	irgsp1_rep	five_prime_UTR	734623	734809	.	+	.	Parent=Os08t0113600-01
Chr08	irgsp1_rep	CDS	734810	735289	.	+	0	Parent=Os08t0113600-01
Chr08	irgsp1_rep	three_prime_UTR	735290	735664	.	+	.	Parent=Os08t0113600-01
Chr08	irgsp1_rep	mRNA	734695	735251	.	-	.	ID=Os08t0113700-01;Name=Os08t0113700-01;Locus_id=Os08g0113700;Note=Conserved hypothetical protein.;Transcript_evidence=AK070327 (DDBJ%2C Best hit);ORF_evidence=B9FYR5 (UniProt);NIAS_FLcDNA=J023047N24;Expression=AK070327;TENOR=Os08t0113700-01;KEGG=Os08t0113700-01
Chr08	irgsp1_rep	five_prime_UTR	735224	735251	.	-	.	Parent=Os08t0113700-01
Chr08	irgsp1_rep	CDS	734840	735223	.	-	0	Parent=Os08t0113700-01
Chr08	irgsp1_rep	three_prime_UTR	734695	734839	.	-	.	Parent=Os08t0113700-01
Chr08	irgsp1_rep	mRNA	740821	745479	.	-	.	ID=Os08t0113800-01;Name=Os08t0113800-01;Locus_id=Os08g0113800;Note=Hypothetical conserved gene.;Transcript_evidence=AK241078 (DDBJ%2C Best hit);ORF_evidence=B9FYR6 (UniProt);InterPro=Protein of unknown function DUF791 (IPR008509),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J065071I11;TENOR=Os08t0113800-01;KEGG=Os08t0113800-01
Chr08	irgsp1_rep	five_prime_UTR	745352	745479	.	-	.	Parent=Os08t0113800-01
Chr08	irgsp1_rep	CDS	745129	745351	.	-	0	Parent=Os08t0113800-01
Chr08	irgsp1_rep	CDS	744901	745045	.	-	2	Parent=Os08t0113800-01
Chr08	irgsp1_rep	CDS	743479	743647	.	-	1	Parent=Os08t0113800-01
Chr08	irgsp1_rep	CDS	743137	743395	.	-	0	Parent=Os08t0113800-01
Chr08	irgsp1_rep	CDS	742344	742432	.	-	2	Parent=Os08t0113800-01
Chr08	irgsp1_rep	CDS	742044	742226	.	-	0	Parent=Os08t0113800-01
Chr08	irgsp1_rep	CDS	741878	741963	.	-	0	Parent=Os08t0113800-01
Chr08	irgsp1_rep	CDS	741718	741802	.	-	1	Parent=Os08t0113800-01
Chr08	irgsp1_rep	CDS	741296	741430	.	-	0	Parent=Os08t0113800-01
Chr08	irgsp1_rep	three_prime_UTR	740821	741295	.	-	.	Parent=Os08t0113800-01
Chr08	irgsp1_rep	mRNA	746499	747134	.	+	.	ID=Os08t0113900-01;Name=Os08t0113900-01;Locus_id=Os08g0113900;Note=Conserved hypothetical protein.;Transcript_evidence=AK062376 (DDBJ%2C Best hit);ORF_evidence=B8BA66 (UniProt);NIAS_FLcDNA=001-102-B01;Expression=AK062376;TENOR=Os08t0113900-01;KEGG=Os08t0113900-01
Chr08	irgsp1_rep	five_prime_UTR	746499	746565	.	+	.	Parent=Os08t0113900-01
Chr08	irgsp1_rep	CDS	746566	746892	.	+	0	Parent=Os08t0113900-01
Chr08	irgsp1_rep	three_prime_UTR	746893	747134	.	+	.	Parent=Os08t0113900-01
Chr08	irgsp1_rep	mRNA	749996	750899	.	+	.	ID=Os08t0114000-01;Name=Os08t0114000-01;Locus_id=Os08g0114000;Note=Conserved hypothetical protein.;Transcript_evidence=AK107979 (DDBJ%2C Best hit);ORF_evidence=Q6YXT9 (UniProt);NIAS_FLcDNA=002-135-E04;TENOR=Os08t0114000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	749996	750329	.	+	.	Parent=Os08t0114000-01
Chr08	irgsp1_rep	CDS	750330	750749	.	+	0	Parent=Os08t0114000-01
Chr08	irgsp1_rep	three_prime_UTR	750750	750899	.	+	.	Parent=Os08t0114000-01
Chr08	irgsp1_rep	mRNA	751421	753191	.	+	.	ID=Os08t0114100-01;Name=Os08t0114100-01;Locus_id=Os08g0114100;RAP-DB Gene Symbol Synonym(s)=OsGSE;RAP-DB Gene Name Synonym(s)=GREEN SPECIAL EXPRESS;CGSNL Gene Symbol=GSE;CGSNL Gene Name=GREEN SPECIAL EXPRESS;Oryzabase Gene Symbol Synonym(s)=OsGSE;Note=Green tissues expressed protein;Transcript_evidence=AK099560;ORF_evidence=Q6YXS1;InterPro=Domain of unknown function DUF4033 (IPR025114);NIAS_FLcDNA=J013034J05;Manual Curation=June 10%2C 2019;Literature_PMID=29996483;Oryzabase=22696;Expression=AK099560;TENOR=Os08t0114100-01;KEGG=Os08t0114100-01;Subcellular location=chloroplast (GO:0009507)
Chr08	irgsp1_rep	five_prime_UTR	751421	751460	.	+	.	Parent=Os08t0114100-01
Chr08	irgsp1_rep	CDS	751461	751931	.	+	0	Parent=Os08t0114100-01
Chr08	irgsp1_rep	CDS	752004	752065	.	+	0	Parent=Os08t0114100-01
Chr08	irgsp1_rep	CDS	752151	752257	.	+	1	Parent=Os08t0114100-01
Chr08	irgsp1_rep	CDS	752438	752533	.	+	2	Parent=Os08t0114100-01
Chr08	irgsp1_rep	CDS	752673	752722	.	+	2	Parent=Os08t0114100-01
Chr08	irgsp1_rep	three_prime_UTR	752723	752814	.	+	.	Parent=Os08t0114100-01
Chr08	irgsp1_rep	three_prime_UTR	752908	753191	.	+	.	Parent=Os08t0114100-01
Chr08	irgsp1_rep	mRNA	753535	753800	.	+	.	ID=Os08t0114125-00;Name=Os08t0114125-00;Locus_id=Os08g0114125;Note=Similar to predicted protein.;Transcript_evidence=EU943426 (DDBJ);ORF_evidence=XP_002327722.1 (RefSeq);TENOR=Os08t0114125-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	753535	753674	.	+	.	Parent=Os08t0114125-00
Chr08	irgsp1_rep	CDS	753675	753800	.	+	0	Parent=Os08t0114125-00
Chr08	irgsp1_rep	mRNA	756593	756814	.	+	.	ID=Os08t0114150-00;Name=Os08t0114150-00;Locus_id=Os08g0114150;Note=Similar to predicted protein.;Transcript_evidence=EU943426 (DDBJ);ORF_evidence=XP_002327722.1 (RefSeq);TENOR=Os08t0114150-00;KEGG=Os08t0114150-00
Chr08	irgsp1_rep	CDS	756593	756742	.	+	0	Parent=Os08t0114150-00
Chr08	irgsp1_rep	three_prime_UTR	756743	756814	.	+	.	Parent=Os08t0114150-00
Chr08	irgsp1_rep	mRNA	758210	758437	.	+	.	ID=Os08t0114175-00;Name=Os08t0114175-00;Locus_id=Os08g0114175;Note=Similar to predicted protein.;Transcript_evidence=EU940750 (DDBJ);ORF_evidence=XP_002327722.1 (RefSeq);TENOR=Os08t0114175-00;KEGG=Os08t0114175-00
Chr08	irgsp1_rep	CDS	758210	758305	.	+	0	Parent=Os08t0114175-00
Chr08	irgsp1_rep	three_prime_UTR	758306	758437	.	+	.	Parent=Os08t0114175-00
Chr08	irgsp1_rep	mRNA	763213	765079	.	+	.	ID=Os08t0114200-01;Name=Os08t0114200-01;Locus_id=Os08g0114200;CGSNL Gene Symbol=GH9B16;CGSNL Gene Name=GLYCOSIDE HYDROLASE 9B16;Oryzabase Gene Symbol Synonym(s)=OsGH9B16;Oryzabase Gene Name Synonym(s)=glycoside hydrolase OsGH9B16%2C glycoside hydrolase 9B16;Note=Similar to CEL5%3DCELLULASE 5 (Fragment).;Transcript_evidence=AK106851 (DDBJ%2C Best hit);ORF_evidence=P05522 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 9 (IPR001701),Six-hairpin glycosidase-like (IPR008928),Six-hairpin glycosidase (IPR012341),Glycoside hydrolase%2C family 9%2C active site (IPR018221);NIAS_FLcDNA=002-118-A12;Oryzabase=11716;Expression=AK106851;TENOR=Os08t0114200-01;KEGG=Os08t0114200-01
Chr08	irgsp1_rep	five_prime_UTR	763213	763285	.	+	.	Parent=Os08t0114200-01
Chr08	irgsp1_rep	CDS	763286	763570	.	+	0	Parent=Os08t0114200-01
Chr08	irgsp1_rep	CDS	763656	764942	.	+	0	Parent=Os08t0114200-01
Chr08	irgsp1_rep	three_prime_UTR	764943	765079	.	+	.	Parent=Os08t0114200-01
Chr08	irgsp1_rep	mRNA	763354	764929	.	-	.	ID=Os08t0114225-00;Name=Os08t0114225-00;Locus_id=Os08g0114225;Note=Hypothetical protein.;Transcript_evidence=tplb0042g22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0114225-00
Chr08	irgsp1_rep	five_prime_UTR	764346	764929	.	-	.	Parent=Os08t0114225-00
Chr08	irgsp1_rep	CDS	763655	764345	.	-	0	Parent=Os08t0114225-00
Chr08	irgsp1_rep	CDS	763447	763571	.	-	2	Parent=Os08t0114225-00
Chr08	irgsp1_rep	three_prime_UTR	763354	763446	.	-	.	Parent=Os08t0114225-00
Chr08	irgsp1_rep	mRNA	767551	768235	.	-	.	ID=Os08t0114250-00;Name=Os08t0114250-00;Locus_id=Os08g0114250;Note=Non-protein coding transcript.;Transcript_evidence=CT836034 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os08t0114250-00
Chr08	irgsp1_rep	exon	767551	768235	.	-	.	Parent=Os08t0114250-00
Chr08	irgsp1_rep	mRNA	768391	770807	.	-	.	ID=Os08t0114300-01;Name=Os08t0114300-01;Locus_id=Os08g0114300;Note=D-arabinono-1%2C4-lactone oxidase domain containing protein.;Transcript_evidence=AK105866 (DDBJ%2C Best hit);ORF_evidence=Q01KR7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: D-arabinono-1%2C4-lactone oxidase activity (GO:0003885),Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=FAD linked oxidase%2C N-terminal (IPR006094),D-arabinono-1%2C4-lactone oxidase (IPR007173),Plant-specific FAD-dependent oxidoreductase (IPR010030),FAD-binding%2C type 2 (IPR016166),FAD-linked oxidase%2C FAD-binding%2C subdomain 2 (IPR016168);NIAS_FLcDNA=001-204-A07;Expression=AK105866;TENOR=Os08t0114300-01;KEGG=Os08t0114300-01
Chr08	irgsp1_rep	five_prime_UTR	770760	770807	.	-	.	Parent=Os08t0114300-01
Chr08	irgsp1_rep	CDS	770097	770759	.	-	0	Parent=Os08t0114300-01
Chr08	irgsp1_rep	CDS	768632	769738	.	-	0	Parent=Os08t0114300-01
Chr08	irgsp1_rep	three_prime_UTR	768391	768631	.	-	.	Parent=Os08t0114300-01
Chr08	irgsp1_rep	mRNA	768552	769785	.	+	.	ID=Os08t0114400-01;Name=Os08t0114400-01;Locus_id=Os08g0114400;Note=Hypothetical protein.;Transcript_evidence=AK063165 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-106-H10;Expression=AK063165;TENOR=Os08t0114400-01;KEGG=Os08t0114400-01
Chr08	irgsp1_rep	five_prime_UTR	768552	768583	.	+	.	Parent=Os08t0114400-01
Chr08	irgsp1_rep	CDS	768584	769759	.	+	0	Parent=Os08t0114400-01
Chr08	irgsp1_rep	three_prime_UTR	769760	769785	.	+	.	Parent=Os08t0114400-01
Chr08	irgsp1_rep	mRNA	795470	797479	.	-	.	ID=Os08t0115200-01;Name=Os08t0115200-01;Locus_id=Os08g0115200;RAP-DB Gene Symbol Synonym(s)=OsIQD14;RAP-DB Gene Name Synonym(s)=OsIQ67-DOMAIN14;CGSNL Gene Symbol=IQD14;CGSNL Gene Name=IQ67-DOMAIN14;Oryzabase Gene Symbol Synonym(s)=OsIQD14;Oryzabase Gene Name Synonym(s)=IQ67-DOMAIN 14%2C IQD family protein 14;Note=Microtubule-localized IQ-domain containing protein%2C Modulation of microtubule cytoskeleton dynamics%2C Regulation of grain shape;Transcript_evidence=AK100461;ORF_evidence=Q6YXT2;GO=Molecular Function: protein binding (GO:0005515);InterPro=Domain of unknown function DUF4005 (IPR025064),IQ motif%2C EF-hand binding site (IPR000048);NIAS_FLcDNA=J023091O18;Manual Curation=October 21%2C 2019;Literature_PMID=31622529;Oryzabase=23307;Expression=AK100461;TENOR=Os08t0115200-01;KEGG=Os08t0115200-01;Subcellular location=microtubule (GO:0005874)
Chr08	irgsp1_rep	five_prime_UTR	797439	797479	.	-	.	Parent=Os08t0115200-01
Chr08	irgsp1_rep	CDS	797313	797438	.	-	0	Parent=Os08t0115200-01
Chr08	irgsp1_rep	CDS	796648	797235	.	-	0	Parent=Os08t0115200-01
Chr08	irgsp1_rep	CDS	796415	796564	.	-	0	Parent=Os08t0115200-01
Chr08	irgsp1_rep	CDS	795562	796329	.	-	0	Parent=Os08t0115200-01
Chr08	irgsp1_rep	three_prime_UTR	795470	795561	.	-	.	Parent=Os08t0115200-01
Chr08	irgsp1_rep	mRNA	856107	858238	.	+	.	ID=Os08t0115800-01;Name=Os08t0115800-01;Locus_id=Os08g0115800;RAP-DB Gene Symbol Synonym(s)=OsSWN2S;CGSNL Gene Symbol=NAC29;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 29;Oryzabase Gene Symbol Synonym(s)=ONAC029%2C ONAC29%2C OsSWN2%2C OsSWN2L%2C OsSWN2S%2C OsNST1/2%2C SWN2%2C SWN2L%2C SWN2S%2C NST1/2%2C DLN201%2C OsDLN201;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 029%2C NAC domain-containing protein 29%2C SECONDARY WALL NAC DOMAIN PROTEIN 2%2C secondary wall NAC transcription factor 2%2C secondary wall-associated NAC 2%2C NAC SECONDARY WALL THICKENING PROMOTING1/2%2C DLN repressor 201%2C DLN motif protein 201;Note=OsSWN2 (NAC transcription factor) splicing variant (very low transcriptional activation ability);Transcript_evidence=AK109860;ORF_evidence=Q6YXS5;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=NAC domain superfamily (IPR036093),NAC domain (IPR003441);NIAS_FLcDNA=002-148-G11;Manual Curation=October 20%2C 2020;Literature_PMID=24098302;Oryzabase=11475;TENOR=Os08t0115800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	856107	856391	.	+	.	Parent=Os08t0115800-01
Chr08	irgsp1_rep	CDS	856392	856563	.	+	0	Parent=Os08t0115800-01
Chr08	irgsp1_rep	CDS	856711	856994	.	+	2	Parent=Os08t0115800-01
Chr08	irgsp1_rep	CDS	857362	857613	.	+	0	Parent=Os08t0115800-01
Chr08	irgsp1_rep	CDS	857807	857860	.	+	0	Parent=Os08t0115800-01
Chr08	irgsp1_rep	three_prime_UTR	857861	858238	.	+	.	Parent=Os08t0115800-01
Chr08	irgsp1_rep	mRNA	856109	858607	.	+	.	ID=Os08t0115800-02;Name=Os08t0115800-02;Locus_id=Os08g0115800;RAP-DB Gene Symbol Synonym(s)=NAC29%2C OsSWN2%2C OsSWN2L;RAP-DB Gene Name Synonym(s)=secondary wall NAC transcription factor 2%2C secondary wall-associated NAC domain protein 2;CGSNL Gene Symbol=NAC29;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 29;Oryzabase Gene Symbol Synonym(s)=ONAC029%2C ONAC29%2C OsSWN2%2C OsSWN2L%2C OsSWN2S%2C OsNST1/2%2C SWN2%2C SWN2L%2C SWN2S%2C NST1/2%2C DLN201%2C OsDLN201;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 029%2C NAC domain-containing protein 29%2C SECONDARY WALL NAC DOMAIN PROTEIN 2%2C secondary wall NAC transcription factor 2%2C secondary wall-associated NAC 2%2C NAC SECONDARY WALL THICKENING PROMOTING1/2%2C DLN repressor 201%2C DLN motif protein 201;Note=NAC transcription factor%2C Regulation of cellulose synthesis;Transcript_evidence=JN634071,Inferred from literature;ORF_evidence=G3M8D2;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=NAC domain superfamily (IPR036093),NAC domain (IPR003441);Manual Curation=October 20%2C 2020;Literature_PMID=26002868,24098302,21908441;Oryzabase=11475;Subcellular location=nucleus (GO:0005634)
Chr08	irgsp1_rep	five_prime_UTR	856109	856391	.	+	.	Parent=Os08t0115800-02
Chr08	irgsp1_rep	CDS	856392	856563	.	+	0	Parent=Os08t0115800-02
Chr08	irgsp1_rep	CDS	856711	856994	.	+	2	Parent=Os08t0115800-02
Chr08	irgsp1_rep	CDS	857362	858108	.	+	0	Parent=Os08t0115800-02
Chr08	irgsp1_rep	three_prime_UTR	858109	858607	.	+	.	Parent=Os08t0115800-02
Chr08	irgsp1_rep	mRNA	856417	856982	.	-	.	ID=Os08t0116100-00;Name=Os08t0116100-00;Locus_id=Os08g0116100;Note=Hypothetical protein.;Transcript_evidence=FP093663 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0116100-00
Chr08	irgsp1_rep	CDS	856728	856982	.	-	0	Parent=Os08t0116100-00
Chr08	irgsp1_rep	three_prime_UTR	856417	856727	.	-	.	Parent=Os08t0116100-00
Chr08	irgsp1_rep	mRNA	892930	899068	.	-	.	ID=Os08t0116400-01;Name=Os08t0116400-01;Locus_id=Os08g0116400;Note=Similar to CID11.;Transcript_evidence=AK103042 (DDBJ%2C Best hit);ORF_evidence=NP_001150079.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Ataxin-2%2C C-terminal (IPR009818),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033117F04;Expression=AK103042;TENOR=Os08t0116400-01;KEGG=Os08t0116400-01
Chr08	irgsp1_rep	five_prime_UTR	898746	899068	.	-	.	Parent=Os08t0116400-01
Chr08	irgsp1_rep	CDS	898509	898745	.	-	0	Parent=Os08t0116400-01
Chr08	irgsp1_rep	CDS	898258	898401	.	-	0	Parent=Os08t0116400-01
Chr08	irgsp1_rep	CDS	895070	895114	.	-	0	Parent=Os08t0116400-01
Chr08	irgsp1_rep	CDS	894923	894995	.	-	0	Parent=Os08t0116400-01
Chr08	irgsp1_rep	CDS	894737	894849	.	-	2	Parent=Os08t0116400-01
Chr08	irgsp1_rep	CDS	894550	894609	.	-	0	Parent=Os08t0116400-01
Chr08	irgsp1_rep	CDS	894421	894468	.	-	0	Parent=Os08t0116400-01
Chr08	irgsp1_rep	CDS	894253	894321	.	-	0	Parent=Os08t0116400-01
Chr08	irgsp1_rep	CDS	893429	893490	.	-	0	Parent=Os08t0116400-01
Chr08	irgsp1_rep	CDS	893283	893340	.	-	1	Parent=Os08t0116400-01
Chr08	irgsp1_rep	three_prime_UTR	892930	893282	.	-	.	Parent=Os08t0116400-01
Chr08	irgsp1_rep	mRNA	892930	899037	.	-	.	ID=Os08t0116400-02;Name=Os08t0116400-02;Locus_id=Os08g0116400;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK061804 (DDBJ%2C Best hit);ORF_evidence=NP_001150079.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-040-A01;Expression=AK061804;TENOR=Os08t0116400-02;KEGG=Os08t0116400-02
Chr08	irgsp1_rep	CDS	898903	899037	.	-	0	Parent=Os08t0116400-02
Chr08	irgsp1_rep	CDS	898509	898553	.	-	0	Parent=Os08t0116400-02
Chr08	irgsp1_rep	CDS	898258	898401	.	-	0	Parent=Os08t0116400-02
Chr08	irgsp1_rep	CDS	895070	895114	.	-	0	Parent=Os08t0116400-02
Chr08	irgsp1_rep	CDS	894923	894995	.	-	0	Parent=Os08t0116400-02
Chr08	irgsp1_rep	CDS	894737	894849	.	-	2	Parent=Os08t0116400-02
Chr08	irgsp1_rep	CDS	894550	894609	.	-	0	Parent=Os08t0116400-02
Chr08	irgsp1_rep	CDS	894421	894468	.	-	0	Parent=Os08t0116400-02
Chr08	irgsp1_rep	CDS	894253	894321	.	-	0	Parent=Os08t0116400-02
Chr08	irgsp1_rep	CDS	893429	893490	.	-	0	Parent=Os08t0116400-02
Chr08	irgsp1_rep	CDS	893283	893340	.	-	1	Parent=Os08t0116400-02
Chr08	irgsp1_rep	three_prime_UTR	892930	893282	.	-	.	Parent=Os08t0116400-02
Chr08	irgsp1_rep	mRNA	904128	905609	.	+	.	ID=Os08t0116500-01;Name=Os08t0116500-01;Locus_id=Os08g0116500;Oryzabase Gene Name Synonym(s)=Ribosomal protein L12eII%2C Acidic ribosomal protein P2%2C Ribosomal protein rp21c;Note=Similar to 60S acidic ribosomal protein P1 (L12).;Transcript_evidence=AK058240 (DDBJ%2C Best hit);ORF_evidence=Q5I7K5 (UniProt);GO=Biological Process: translational elongation (GO:0006414),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein 60S (IPR001813);NIAS_FLcDNA=001-011-G09;Oryzabase=17660;Expression=AK058240;TENOR=Os08t0116500-01;KEGG=Os08t0116500-01
Chr08	irgsp1_rep	five_prime_UTR	904128	904181	.	+	.	Parent=Os08t0116500-01
Chr08	irgsp1_rep	five_prime_UTR	904286	904314	.	+	.	Parent=Os08t0116500-01
Chr08	irgsp1_rep	CDS	904315	904383	.	+	0	Parent=Os08t0116500-01
Chr08	irgsp1_rep	CDS	904493	904616	.	+	0	Parent=Os08t0116500-01
Chr08	irgsp1_rep	CDS	905156	905241	.	+	2	Parent=Os08t0116500-01
Chr08	irgsp1_rep	CDS	905341	905394	.	+	0	Parent=Os08t0116500-01
Chr08	irgsp1_rep	three_prime_UTR	905395	905609	.	+	.	Parent=Os08t0116500-01
Chr08	irgsp1_rep	mRNA	905207	905583	.	+	.	ID=Os08t0116500-02;Name=Os08t0116500-02;Locus_id=Os08g0116500;Oryzabase Gene Name Synonym(s)=Ribosomal protein L12eII%2C Acidic ribosomal protein P2%2C Ribosomal protein rp21c;Note=Non-protein coding transcript.;Transcript_evidence=AK060433 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-011-B07;Oryzabase=17660;TENOR=Os08t0116500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	exon	905207	905241	.	+	.	Parent=Os08t0116500-02
Chr08	irgsp1_rep	exon	905341	905583	.	+	.	Parent=Os08t0116500-02
Chr08	irgsp1_rep	mRNA	906858	908370	.	-	.	ID=Os08t0116566-00;Name=Os08t0116566-00;Locus_id=Os08g0116566;Note=Hypothetical conserved gene.;Transcript_evidence=BT069214 (DDBJ);ORF_evidence=B9FYS0 (UniProt);TENOR=Os08t0116566-00;KEGG=Os08t0116566-00
Chr08	irgsp1_rep	CDS	908257	908370	.	-	0	Parent=Os08t0116566-00
Chr08	irgsp1_rep	CDS	908066	908176	.	-	0	Parent=Os08t0116566-00
Chr08	irgsp1_rep	CDS	907881	907985	.	-	0	Parent=Os08t0116566-00
Chr08	irgsp1_rep	CDS	907614	907683	.	-	0	Parent=Os08t0116566-00
Chr08	irgsp1_rep	CDS	906875	907536	.	-	2	Parent=Os08t0116566-00
Chr08	irgsp1_rep	three_prime_UTR	906858	906874	.	-	.	Parent=Os08t0116566-00
Chr08	irgsp1_rep	mRNA	906891	907576	.	+	.	ID=Os08t0116632-00;Name=Os08t0116632-00;Locus_id=Os08g0116632;Note=Hypothetical gene.;Transcript_evidence=EU946409 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0116632-00;KEGG=Os08t0116632-00
Chr08	irgsp1_rep	five_prime_UTR	906891	906896	.	+	.	Parent=Os08t0116632-00
Chr08	irgsp1_rep	CDS	906897	907109	.	+	0	Parent=Os08t0116632-00
Chr08	irgsp1_rep	three_prime_UTR	907110	907576	.	+	.	Parent=Os08t0116632-00
Chr08	irgsp1_rep	mRNA	924213	934625	.	-	.	ID=Os08t0116700-01;Name=Os08t0116700-01;Locus_id=Os08g0116700;Note=Conserved hypothetical protein.;Transcript_evidence=AK065511 (DDBJ%2C Best hit);ORF_evidence=B8BAF9 (UniProt);NIAS_FLcDNA=J013028N17;Expression=AK065511;TENOR=Os08t0116700-01;KEGG=Os08t0116700-01
Chr08	irgsp1_rep	five_prime_UTR	934431	934625	.	-	.	Parent=Os08t0116700-01
Chr08	irgsp1_rep	CDS	934337	934430	.	-	0	Parent=Os08t0116700-01
Chr08	irgsp1_rep	CDS	933820	933897	.	-	2	Parent=Os08t0116700-01
Chr08	irgsp1_rep	CDS	933599	933711	.	-	2	Parent=Os08t0116700-01
Chr08	irgsp1_rep	CDS	933419	933512	.	-	0	Parent=Os08t0116700-01
Chr08	irgsp1_rep	CDS	933043	933086	.	-	2	Parent=Os08t0116700-01
Chr08	irgsp1_rep	CDS	932886	932954	.	-	0	Parent=Os08t0116700-01
Chr08	irgsp1_rep	CDS	931847	931920	.	-	0	Parent=Os08t0116700-01
Chr08	irgsp1_rep	CDS	930885	931092	.	-	1	Parent=Os08t0116700-01
Chr08	irgsp1_rep	CDS	929656	929721	.	-	0	Parent=Os08t0116700-01
Chr08	irgsp1_rep	CDS	929477	929556	.	-	0	Parent=Os08t0116700-01
Chr08	irgsp1_rep	CDS	928204	928353	.	-	1	Parent=Os08t0116700-01
Chr08	irgsp1_rep	CDS	927260	927323	.	-	1	Parent=Os08t0116700-01
Chr08	irgsp1_rep	CDS	927073	927174	.	-	0	Parent=Os08t0116700-01
Chr08	irgsp1_rep	CDS	926271	926447	.	-	0	Parent=Os08t0116700-01
Chr08	irgsp1_rep	CDS	925969	926175	.	-	0	Parent=Os08t0116700-01
Chr08	irgsp1_rep	three_prime_UTR	925072	925968	.	-	.	Parent=Os08t0116700-01
Chr08	irgsp1_rep	three_prime_UTR	924905	924989	.	-	.	Parent=Os08t0116700-01
Chr08	irgsp1_rep	three_prime_UTR	924213	924806	.	-	.	Parent=Os08t0116700-01
Chr08	irgsp1_rep	mRNA	927172	931867	.	+	.	ID=Os08t0116750-01;Name=Os08t0116750-01;Locus_id=Os08g0116750;Note=Hypothetical gene.;Transcript_evidence=AK288619 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090054C09;TENOR=Os08t0116750-01;KEGG=Os08t0116750-01
Chr08	irgsp1_rep	five_prime_UTR	927172	931026	.	+	.	Parent=Os08t0116750-01
Chr08	irgsp1_rep	CDS	931027	931518	.	+	0	Parent=Os08t0116750-01
Chr08	irgsp1_rep	three_prime_UTR	931519	931867	.	+	.	Parent=Os08t0116750-01
Chr08	irgsp1_rep	mRNA	936009	940432	.	-	.	ID=Os08t0116800-01;Name=Os08t0116800-01;Locus_id=Os08g0116800;Note=Exoribonuclease domain containing protein.;Transcript_evidence=AK063695 (DDBJ%2C Best hit);ORF_evidence=NP_194479.2 (RefSeq);GO=Biological Process: RNA processing (GO:0006396),Molecular Function: RNA binding (GO:0003723);InterPro=Exoribonuclease%2C phosphorolytic domain 1 (IPR001247),Exoribonuclease%2C phosphorolytic domain 2 (IPR015847),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=001-119-G01;Expression=AK063695;TENOR=Os08t0116800-01;KEGG=Os08t0116800-01
Chr08	irgsp1_rep	five_prime_UTR	940384	940432	.	-	.	Parent=Os08t0116800-01
Chr08	irgsp1_rep	CDS	940224	940383	.	-	0	Parent=Os08t0116800-01
Chr08	irgsp1_rep	CDS	938030	938108	.	-	2	Parent=Os08t0116800-01
Chr08	irgsp1_rep	CDS	937263	937365	.	-	1	Parent=Os08t0116800-01
Chr08	irgsp1_rep	CDS	937041	937161	.	-	0	Parent=Os08t0116800-01
Chr08	irgsp1_rep	CDS	936681	936769	.	-	2	Parent=Os08t0116800-01
Chr08	irgsp1_rep	CDS	936438	936587	.	-	0	Parent=Os08t0116800-01
Chr08	irgsp1_rep	CDS	936271	936357	.	-	0	Parent=Os08t0116800-01
Chr08	irgsp1_rep	three_prime_UTR	936009	936270	.	-	.	Parent=Os08t0116800-01
Chr08	irgsp1_rep	mRNA	940888	944407	.	-	.	ID=Os08t0116900-01;Name=Os08t0116900-01;Locus_id=Os08g0116900;Note=Similar to Avr9 elicitor response-like protein.;Transcript_evidence=AK111853 (DDBJ%2C Best hit),AK112114 (DDBJ%2C Best hit);ORF_evidence=XP_002893747.1 (RefSeq);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Glycosyl transferase%2C family 31 (IPR002659);NIAS_FLcDNA=J033011L21,001-124-C12;Expression=AK111853;TENOR=Os08t0116900-01;KEGG=Os08t0116900-01
Chr08	irgsp1_rep	five_prime_UTR	944355	944407	.	-	.	Parent=Os08t0116900-01
Chr08	irgsp1_rep	CDS	944233	944354	.	-	0	Parent=Os08t0116900-01
Chr08	irgsp1_rep	CDS	944021	944060	.	-	1	Parent=Os08t0116900-01
Chr08	irgsp1_rep	CDS	943870	943931	.	-	0	Parent=Os08t0116900-01
Chr08	irgsp1_rep	CDS	943585	943790	.	-	1	Parent=Os08t0116900-01
Chr08	irgsp1_rep	CDS	943438	943501	.	-	2	Parent=Os08t0116900-01
Chr08	irgsp1_rep	CDS	943193	943271	.	-	1	Parent=Os08t0116900-01
Chr08	irgsp1_rep	CDS	942983	943103	.	-	0	Parent=Os08t0116900-01
Chr08	irgsp1_rep	CDS	942784	942871	.	-	2	Parent=Os08t0116900-01
Chr08	irgsp1_rep	CDS	942275	942400	.	-	1	Parent=Os08t0116900-01
Chr08	irgsp1_rep	CDS	942090	942199	.	-	1	Parent=Os08t0116900-01
Chr08	irgsp1_rep	CDS	941146	941294	.	-	2	Parent=Os08t0116900-01
Chr08	irgsp1_rep	three_prime_UTR	940888	941145	.	-	.	Parent=Os08t0116900-01
Chr08	irgsp1_rep	mRNA	948033	952596	.	+	.	ID=Os08t0117000-01;Name=Os08t0117000-01;Locus_id=Os08g0117000;RAP-DB Gene Symbol Synonym(s)=PSS1%2C pss1;RAP-DB Gene Name Synonym(s)=POLLEN SEMI-STERILITY 1%2C pollen semi-sterility 1%2C pollen semi-sterile 1%2C Pollen semi-sterility1;CGSNL Gene Symbol=PSS1;CGSNL Gene Name=POLLEN SEMI-STERILITY 1;Oryzabase Gene Symbol Synonym(s)=pss1%2C OsPSS1;Oryzabase Gene Name Synonym(s)=pollen semi-sterility 1%2C pollen semi-sterile 1%2C Pollen semi-sterility1%2C Pollen semisterility1%2C Pollen semisterility 1;Note=Kinesin-1-like protein%2C Male meiosis and anther dehiscence;Transcript_evidence=AK287457,BK007977;ORF_evidence=F9W301;GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524),Molecular Function: microtubule binding (GO:0008017),Cellular Component: kinesin complex (GO:0005871);InterPro=Kinesin-like protein (IPR027640),Kinesin motor domain (IPR001752),P-loop containing nucleoside triphosphate hydrolase (IPR027417),Kinesin motor domain%2C conserved site (IPR019821);NIAS_FLcDNA=J043019L17;Manual Curation=April 18%2C 2011;Literature_PMID=21282525;Oryzabase=8643;TENOR=Os08t0117000-01;KEGG=Os08t0117000-01
Chr08	irgsp1_rep	five_prime_UTR	948033	948251	.	+	.	Parent=Os08t0117000-01
Chr08	irgsp1_rep	five_prime_UTR	948789	948838	.	+	.	Parent=Os08t0117000-01
Chr08	irgsp1_rep	CDS	948839	948952	.	+	0	Parent=Os08t0117000-01
Chr08	irgsp1_rep	CDS	949310	949412	.	+	0	Parent=Os08t0117000-01
Chr08	irgsp1_rep	CDS	949549	949592	.	+	2	Parent=Os08t0117000-01
Chr08	irgsp1_rep	CDS	949832	949861	.	+	0	Parent=Os08t0117000-01
Chr08	irgsp1_rep	CDS	949960	950082	.	+	0	Parent=Os08t0117000-01
Chr08	irgsp1_rep	CDS	950161	950186	.	+	0	Parent=Os08t0117000-01
Chr08	irgsp1_rep	CDS	950279	950360	.	+	1	Parent=Os08t0117000-01
Chr08	irgsp1_rep	CDS	950482	950523	.	+	0	Parent=Os08t0117000-01
Chr08	irgsp1_rep	CDS	950604	950637	.	+	0	Parent=Os08t0117000-01
Chr08	irgsp1_rep	CDS	950721	950796	.	+	2	Parent=Os08t0117000-01
Chr08	irgsp1_rep	CDS	951124	951272	.	+	1	Parent=Os08t0117000-01
Chr08	irgsp1_rep	CDS	951368	951429	.	+	2	Parent=Os08t0117000-01
Chr08	irgsp1_rep	CDS	951499	951588	.	+	0	Parent=Os08t0117000-01
Chr08	irgsp1_rep	CDS	951672	951788	.	+	0	Parent=Os08t0117000-01
Chr08	irgsp1_rep	CDS	951878	952060	.	+	0	Parent=Os08t0117000-01
Chr08	irgsp1_rep	CDS	952148	952306	.	+	0	Parent=Os08t0117000-01
Chr08	irgsp1_rep	three_prime_UTR	952307	952596	.	+	.	Parent=Os08t0117000-01
Chr08	irgsp1_rep	mRNA	953687	956144	.	+	.	ID=Os08t0117100-01;Name=Os08t0117100-01;Locus_id=Os08g0117100;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK099630 (DDBJ%2C Best hit);ORF_evidence=A2YQN8 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013058B07;Expression=AK099630;TENOR=Os08t0117100-01;KEGG=Os08t0117100-01
Chr08	irgsp1_rep	five_prime_UTR	953687	953738	.	+	.	Parent=Os08t0117100-01
Chr08	irgsp1_rep	CDS	953739	954230	.	+	0	Parent=Os08t0117100-01
Chr08	irgsp1_rep	CDS	955054	955155	.	+	0	Parent=Os08t0117100-01
Chr08	irgsp1_rep	CDS	955259	955564	.	+	0	Parent=Os08t0117100-01
Chr08	irgsp1_rep	CDS	955902	955961	.	+	0	Parent=Os08t0117100-01
Chr08	irgsp1_rep	three_prime_UTR	955962	956144	.	+	.	Parent=Os08t0117100-01
Chr08	irgsp1_rep	mRNA	956604	958484	.	-	.	ID=Os08t0117200-00;Name=Os08t0117200-00;Locus_id=Os08g0117200;Oryzabase Gene Symbol Synonym(s)=RPS13%2C RPS13a%2C OsRPS13%2C OsRPS13a;Oryzabase Gene Name Synonym(s)=Ribosomal protein S13%2C ribosomal protein small subunit 13%2C Ribosomal protein S13a%2C ribosomal protein small subunit 13a;Note=Similar to 40S ribosomal protein S13 (Fragment).;Transcript_evidence=DQ244930 (DDBJ);ORF_evidence=A6MZM9 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S15 (IPR000589),S15/NS1%2C RNA-binding (IPR009068),Ribosomal protein S13/S15%2C N-terminal (IPR012606);Oryzabase=17686;TENOR=Os08t0117200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	958368	958484	.	-	0	Parent=Os08t0117200-00
Chr08	irgsp1_rep	CDS	958125	958263	.	-	0	Parent=Os08t0117200-00
Chr08	irgsp1_rep	CDS	957838	958024	.	-	2	Parent=Os08t0117200-00
Chr08	irgsp1_rep	CDS	956604	956637	.	-	1	Parent=Os08t0117200-00
Chr08	irgsp1_rep	mRNA	962587	964531	.	-	.	ID=Os08t0117300-01;Name=Os08t0117300-01;Locus_id=Os08g0117300;Note=Similar to 40S ribosomal protein S13.;Transcript_evidence=AK059505 (DDBJ%2C Best hit),AK058822 (DDBJ%2C Best hit),AK104147 (DDBJ%2C Best hit);ORF_evidence=B4FML8 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S15 (IPR000589),S15/NS1%2C RNA-binding (IPR009068),Ribosomal protein S13/S15%2C N-terminal (IPR012606);NIAS_FLcDNA=001-029-A10,001-003-G11,006-207-D07;TENOR=Os08t0117300-01
Chr08	irgsp1_rep	five_prime_UTR	964443	964531	.	-	.	Parent=Os08t0117300-01
Chr08	irgsp1_rep	CDS	964420	964442	.	-	0	Parent=Os08t0117300-01
Chr08	irgsp1_rep	CDS	964243	964315	.	-	1	Parent=Os08t0117300-01
Chr08	irgsp1_rep	CDS	963987	964125	.	-	0	Parent=Os08t0117300-01
Chr08	irgsp1_rep	CDS	963711	963897	.	-	2	Parent=Os08t0117300-01
Chr08	irgsp1_rep	CDS	962973	963006	.	-	1	Parent=Os08t0117300-01
Chr08	irgsp1_rep	three_prime_UTR	962587	962972	.	-	.	Parent=Os08t0117300-01
Chr08	irgsp1_rep	mRNA	969318	970248	.	-	.	ID=Os08t0117400-01;Name=Os08t0117400-01;Locus_id=Os08g0117400;CGSNL Gene Symbol=CML7;CGSNL Gene Name=CALMODULIN-LIKE PROTEIN 7;Oryzabase Gene Symbol Synonym(s)=OsCML7%2C OsSTKC;Oryzabase Gene Name Synonym(s)=calmodulin-like protein 7%2C Ser/Thr kinase/calmodulin;Note=Similar to Calmodulin 1 (Fragment).;Transcript_evidence=AK059891 (DDBJ%2C Best hit);ORF_evidence=B6T4U8 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=006-208-D03;Oryzabase=10519;Expression=AK059891;TENOR=Os08t0117400-01;KEGG=Os08t0117400-01
Chr08	irgsp1_rep	five_prime_UTR	970089	970248	.	-	.	Parent=Os08t0117400-01
Chr08	irgsp1_rep	CDS	969642	970088	.	-	0	Parent=Os08t0117400-01
Chr08	irgsp1_rep	three_prime_UTR	969318	969641	.	-	.	Parent=Os08t0117400-01
Chr08	irgsp1_rep	mRNA	969323	970216	.	-	.	ID=Os08t0117400-02;Name=Os08t0117400-02;Locus_id=Os08g0117400;CGSNL Gene Symbol=CML7;CGSNL Gene Name=CALMODULIN-LIKE PROTEIN 7;Oryzabase Gene Symbol Synonym(s)=OsCML7%2C OsSTKC;Oryzabase Gene Name Synonym(s)=calmodulin-like protein 7%2C Ser/Thr kinase/calmodulin;Note=Similar to Calmodulin 1 (Fragment).;Transcript_evidence=AK103863 (DDBJ%2C Best hit);ORF_evidence=B6T4U8 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J033149E23;Oryzabase=10519;Expression=AK103863;TENOR=Os08t0117400-02;KEGG=Os08t0117400-02
Chr08	irgsp1_rep	five_prime_UTR	970089	970216	.	-	.	Parent=Os08t0117400-02
Chr08	irgsp1_rep	CDS	969642	970088	.	-	0	Parent=Os08t0117400-02
Chr08	irgsp1_rep	three_prime_UTR	969323	969641	.	-	.	Parent=Os08t0117400-02
Chr08	irgsp1_rep	mRNA	974289	978910	.	+	.	ID=Os08t0117700-01;Name=Os08t0117700-01;Locus_id=Os08g0117700;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK067392 (DDBJ%2C Best hit);ORF_evidence=Q9FHM8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013104G24;Expression=AK067392;TENOR=Os08t0117700-01;KEGG=Os08t0117700-01
Chr08	irgsp1_rep	five_prime_UTR	974289	974327	.	+	.	Parent=Os08t0117700-01
Chr08	irgsp1_rep	CDS	974328	974808	.	+	0	Parent=Os08t0117700-01
Chr08	irgsp1_rep	CDS	976427	976687	.	+	2	Parent=Os08t0117700-01
Chr08	irgsp1_rep	CDS	976816	977691	.	+	2	Parent=Os08t0117700-01
Chr08	irgsp1_rep	CDS	978182	978672	.	+	2	Parent=Os08t0117700-01
Chr08	irgsp1_rep	three_prime_UTR	978673	978910	.	+	.	Parent=Os08t0117700-01
Chr08	irgsp1_rep	mRNA	976422	978654	.	-	.	ID=Os08t0117750-00;Name=Os08t0117750-00;Locus_id=Os08g0117750;Note=Hypothetical gene.;Transcript_evidence=BT065932 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0117750-00;KEGG=Os08t0117750-00
Chr08	irgsp1_rep	five_prime_UTR	978199	978654	.	-	.	Parent=Os08t0117750-00
Chr08	irgsp1_rep	five_prime_UTR	977447	977665	.	-	.	Parent=Os08t0117750-00
Chr08	irgsp1_rep	CDS	976874	977446	.	-	0	Parent=Os08t0117750-00
Chr08	irgsp1_rep	three_prime_UTR	976422	976873	.	-	.	Parent=Os08t0117750-00
Chr08	irgsp1_rep	mRNA	981210	984101	.	+	.	ID=Os08t0117800-01;Name=Os08t0117800-01;Locus_id=Os08g0117800;CGSNL Gene Symbol=CHX8;CGSNL Gene Name=CATION/H+ EXCHANGER  8;Oryzabase Gene Symbol Synonym(s)=OsCHX08%2C CHX08%2C OsCHX8;Oryzabase Gene Name Synonym(s)=cation/H+ exchanger  8;Note=Cation/H+ exchanger domain containing protein.;Transcript_evidence=AK100696 (DDBJ%2C Best hit);ORF_evidence=A2YQP4 (UniProt);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: solute:hydrogen antiporter activity (GO:0015299);InterPro=Cation/H+ exchanger (IPR006153);NIAS_FLcDNA=J023114J05;Oryzabase=22368;Expression=AK100696;TENOR=Os08t0117800-01;KEGG=Os08t0117800-01
Chr08	irgsp1_rep	five_prime_UTR	981210	981285	.	+	.	Parent=Os08t0117800-01
Chr08	irgsp1_rep	CDS	981286	981531	.	+	0	Parent=Os08t0117800-01
Chr08	irgsp1_rep	CDS	981619	983850	.	+	0	Parent=Os08t0117800-01
Chr08	irgsp1_rep	three_prime_UTR	983851	984101	.	+	.	Parent=Os08t0117800-01
Chr08	irgsp1_rep	mRNA	984069	987922	.	-	.	ID=Os08t0117900-01;Name=Os08t0117900-01;Locus_id=Os08g0117900;Note=Myeloid leukemia factor domain containing protein.;Transcript_evidence=AK102753 (DDBJ%2C Best hit);ORF_evidence=B8BAC8 (UniProt);InterPro=Myeloid leukemia factor (IPR019376);NIAS_FLcDNA=J033106N01;Expression=AK102753;TENOR=Os08t0117900-01;KEGG=Os08t0117900-01
Chr08	irgsp1_rep	five_prime_UTR	987815	987922	.	-	.	Parent=Os08t0117900-01
Chr08	irgsp1_rep	five_prime_UTR	986835	986853	.	-	.	Parent=Os08t0117900-01
Chr08	irgsp1_rep	CDS	986396	986834	.	-	0	Parent=Os08t0117900-01
Chr08	irgsp1_rep	CDS	986139	986305	.	-	2	Parent=Os08t0117900-01
Chr08	irgsp1_rep	CDS	985962	986042	.	-	0	Parent=Os08t0117900-01
Chr08	irgsp1_rep	CDS	985768	985843	.	-	0	Parent=Os08t0117900-01
Chr08	irgsp1_rep	CDS	985601	985690	.	-	2	Parent=Os08t0117900-01
Chr08	irgsp1_rep	CDS	984308	984441	.	-	2	Parent=Os08t0117900-01
Chr08	irgsp1_rep	three_prime_UTR	984069	984307	.	-	.	Parent=Os08t0117900-01
Chr08	irgsp1_rep	mRNA	1007427	1011017	.	+	.	ID=Os08t0118000-01;Name=Os08t0118000-01;Locus_id=Os08g0118000;Oryzabase Gene Symbol Synonym(s)=OsAHL1%2C AHL1;Oryzabase Gene Name Synonym(s)=AT-hook motif nuclear localized protein 1;Note=Protein of unknown function DUF296 domain containing protein.;Transcript_evidence=AK068379 (DDBJ%2C Best hit);ORF_evidence=B4FRV0 (UniProt);GO=Molecular Function: DNA binding (GO:0003677);InterPro=Domain of unknown function DUF296 (IPR005175),AT hook%2C DNA-binding motif (IPR017956);NIAS_FLcDNA=J013146N22;Oryzabase=14657;Expression=AK068379;TENOR=Os08t0118000-01;KEGG=Os08t0118000-01
Chr08	irgsp1_rep	five_prime_UTR	1007427	1007741	.	+	.	Parent=Os08t0118000-01
Chr08	irgsp1_rep	CDS	1007742	1008210	.	+	0	Parent=Os08t0118000-01
Chr08	irgsp1_rep	CDS	1009088	1009155	.	+	2	Parent=Os08t0118000-01
Chr08	irgsp1_rep	CDS	1009704	1009835	.	+	0	Parent=Os08t0118000-01
Chr08	irgsp1_rep	CDS	1009994	1010155	.	+	0	Parent=Os08t0118000-01
Chr08	irgsp1_rep	CDS	1010318	1010605	.	+	0	Parent=Os08t0118000-01
Chr08	irgsp1_rep	three_prime_UTR	1010606	1011017	.	+	.	Parent=Os08t0118000-01
Chr08	irgsp1_rep	mRNA	1015367	1017012	.	-	.	ID=Os08t0118100-00;Name=Os08t0118100-00;Locus_id=Os08g0118100;Note=Similar to F5O11.14 (ACR8).;Transcript_evidence=EU973907 (DDBJ);ORF_evidence=NP_001151985.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: amino acid binding (GO:0016597);InterPro=Amino acid-binding ACT (IPR002912);TENOR=Os08t0118100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	1016995	1017012	.	-	.	Parent=Os08t0118100-00
Chr08	irgsp1_rep	CDS	1016896	1016994	.	-	0	Parent=Os08t0118100-00
Chr08	irgsp1_rep	CDS	1016609	1016791	.	-	0	Parent=Os08t0118100-00
Chr08	irgsp1_rep	CDS	1015844	1016512	.	-	0	Parent=Os08t0118100-00
Chr08	irgsp1_rep	CDS	1015367	1015741	.	-	0	Parent=Os08t0118100-00
Chr08	irgsp1_rep	mRNA	1015550	1016798	.	+	.	ID=Os08t0118300-00;Name=Os08t0118300-00;Locus_id=Os08g0118300;Note=Hypothetical protein.;Transcript_evidence=tplb0061b06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0118300-00
Chr08	irgsp1_rep	five_prime_UTR	1015550	1015751	.	+	.	Parent=Os08t0118300-00
Chr08	irgsp1_rep	five_prime_UTR	1015854	1016285	.	+	.	Parent=Os08t0118300-00
Chr08	irgsp1_rep	CDS	1016286	1016558	.	+	0	Parent=Os08t0118300-00
Chr08	irgsp1_rep	CDS	1016622	1016711	.	+	0	Parent=Os08t0118300-00
Chr08	irgsp1_rep	three_prime_UTR	1016712	1016798	.	+	.	Parent=Os08t0118300-00
Chr08	irgsp1_rep	mRNA	1039566	1040187	.	+	.	ID=Os08t0118500-00;Name=Os08t0118500-00;Locus_id=Os08g0118500;CGSNL Gene Symbol=SAUR31;CGSNL Gene Name=SMALL AUXIN-UP RNA 31;Oryzabase Gene Symbol Synonym(s)=OsSAUR31;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 31;Note=Similar to Auxin-induced SAUR-like protein.;Transcript_evidence=CT835918 (DDBJ%2C Best hit);ORF_evidence=NP_001148413.1 (RefSeq);InterPro=Auxin responsive SAUR protein (IPR003676);Oryzabase=9156;TENOR=Os08t0118500-00;KEGG=Os08t0118500-00
Chr08	irgsp1_rep	five_prime_UTR	1039566	1039675	.	+	.	Parent=Os08t0118500-00
Chr08	irgsp1_rep	CDS	1039676	1040005	.	+	0	Parent=Os08t0118500-00
Chr08	irgsp1_rep	three_prime_UTR	1040006	1040187	.	+	.	Parent=Os08t0118500-00
Chr08	irgsp1_rep	mRNA	1042319	1042377	.	+	.	ID=Os08t0118600-00;Name=Os08t0118600-00;Locus_id=Os08g0118600;Note=Non-protein coding transcript.;Transcript_evidence=X06283 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0118600-00
Chr08	irgsp1_rep	exon	1042319	1042377	.	+	.	Parent=Os08t0118600-00
Chr08	irgsp1_rep	mRNA	1043605	1043663	.	+	.	ID=Os08t0118700-00;Name=Os08t0118700-00;Locus_id=Os08g0118700;Note=Non-protein coding transcript.;Transcript_evidence=X06283 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0118700-00
Chr08	irgsp1_rep	exon	1043605	1043663	.	+	.	Parent=Os08t0118700-00
Chr08	irgsp1_rep	mRNA	1045709	1046017	.	+	.	ID=Os08t0118800-00;Name=Os08t0118800-00;Locus_id=Os08g0118800;CGSNL Gene Symbol=SAUR32;CGSNL Gene Name=SMALL AUXIN-UP RNA 32;Oryzabase Gene Symbol Synonym(s)=OsSAUR32;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 32;Note=Similar to SAUR31 - auxin-responsive SAUR family member.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001148413.1 (RefSeq);InterPro=Auxin responsive SAUR protein (IPR003676);Oryzabase=9157;TENOR=Os08t0118800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	1045709	1046017	.	+	0	Parent=Os08t0118800-00
Chr08	irgsp1_rep	mRNA	1046937	1049979	.	+	.	ID=Os08t0118900-01;Name=Os08t0118900-01;Locus_id=Os08g0118900;Note=Adenylate kinase family protein.;Transcript_evidence=AK109749 (DDBJ%2C Best hit);ORF_evidence=B6TA46 (UniProt);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleobase-containing compound kinase activity (GO:0019205);InterPro=Adenylate kinase (IPR000850);NIAS_FLcDNA=002-146-F06;Expression=AK109749;TENOR=Os08t0118900-01;KEGG=Os08t0118900-01 (EC:2.7.4.3)
Chr08	irgsp1_rep	five_prime_UTR	1046937	1047040	.	+	.	Parent=Os08t0118900-01
Chr08	irgsp1_rep	CDS	1047041	1047394	.	+	0	Parent=Os08t0118900-01
Chr08	irgsp1_rep	CDS	1048480	1048620	.	+	0	Parent=Os08t0118900-01
Chr08	irgsp1_rep	CDS	1048767	1049018	.	+	0	Parent=Os08t0118900-01
Chr08	irgsp1_rep	CDS	1049571	1049723	.	+	0	Parent=Os08t0118900-01
Chr08	irgsp1_rep	three_prime_UTR	1049724	1049979	.	+	.	Parent=Os08t0118900-01
Chr08	irgsp1_rep	mRNA	1050637	1054921	.	+	.	ID=Os08t0119000-01;Name=Os08t0119000-01;Locus_id=Os08g0119000;Oryzabase Gene Symbol Synonym(s)=OsCOP9%2C COP9;Oryzabase Gene Name Synonym(s)=COP9 complex subunit 3%2C COP9 signalosome subunit 3;Note=CSN3 (Fragment).;Transcript_evidence=AK058565 (DDBJ%2C Best hit);ORF_evidence=B6TEU1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Proteasome component (PCI) domain (IPR000717),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=001-017-E02;Oryzabase=23402;TENOR=Os08t0119000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	1050637	1050750	.	+	.	Parent=Os08t0119000-01
Chr08	irgsp1_rep	CDS	1050751	1050938	.	+	0	Parent=Os08t0119000-01
Chr08	irgsp1_rep	CDS	1051065	1051186	.	+	1	Parent=Os08t0119000-01
Chr08	irgsp1_rep	CDS	1051324	1051570	.	+	2	Parent=Os08t0119000-01
Chr08	irgsp1_rep	CDS	1051653	1051710	.	+	1	Parent=Os08t0119000-01
Chr08	irgsp1_rep	CDS	1051786	1051875	.	+	0	Parent=Os08t0119000-01
Chr08	irgsp1_rep	CDS	1052837	1052899	.	+	0	Parent=Os08t0119000-01
Chr08	irgsp1_rep	CDS	1053303	1053392	.	+	0	Parent=Os08t0119000-01
Chr08	irgsp1_rep	CDS	1053586	1053744	.	+	0	Parent=Os08t0119000-01
Chr08	irgsp1_rep	CDS	1053820	1053941	.	+	0	Parent=Os08t0119000-01
Chr08	irgsp1_rep	CDS	1054490	1054562	.	+	1	Parent=Os08t0119000-01
Chr08	irgsp1_rep	CDS	1054652	1054720	.	+	0	Parent=Os08t0119000-01
Chr08	irgsp1_rep	three_prime_UTR	1054721	1054921	.	+	.	Parent=Os08t0119000-01
Chr08	irgsp1_rep	mRNA	1050693	1054921	.	+	.	ID=Os08t0119000-02;Name=Os08t0119000-02;Locus_id=Os08g0119000;Oryzabase Gene Symbol Synonym(s)=OsCOP9%2C COP9;Oryzabase Gene Name Synonym(s)=COP9 complex subunit 3%2C COP9 signalosome subunit 3;Note=CSN3 (Fragment).;Transcript_evidence=AK099289 (DDBJ%2C Best hit);ORF_evidence=B6TEU1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Proteasome component (PCI) domain (IPR000717),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=J023126C02;Oryzabase=23402;Expression=AK099289;TENOR=Os08t0119000-02;KEGG=Os08t0119000-02
Chr08	irgsp1_rep	five_prime_UTR	1050693	1050750	.	+	.	Parent=Os08t0119000-02
Chr08	irgsp1_rep	CDS	1050751	1050938	.	+	0	Parent=Os08t0119000-02
Chr08	irgsp1_rep	CDS	1051065	1051186	.	+	1	Parent=Os08t0119000-02
Chr08	irgsp1_rep	CDS	1051324	1051570	.	+	2	Parent=Os08t0119000-02
Chr08	irgsp1_rep	CDS	1051653	1051710	.	+	1	Parent=Os08t0119000-02
Chr08	irgsp1_rep	CDS	1051786	1051875	.	+	0	Parent=Os08t0119000-02
Chr08	irgsp1_rep	CDS	1052837	1052899	.	+	0	Parent=Os08t0119000-02
Chr08	irgsp1_rep	CDS	1053303	1053392	.	+	0	Parent=Os08t0119000-02
Chr08	irgsp1_rep	CDS	1053586	1053744	.	+	0	Parent=Os08t0119000-02
Chr08	irgsp1_rep	CDS	1053820	1053941	.	+	0	Parent=Os08t0119000-02
Chr08	irgsp1_rep	CDS	1054490	1054562	.	+	1	Parent=Os08t0119000-02
Chr08	irgsp1_rep	CDS	1054652	1054720	.	+	0	Parent=Os08t0119000-02
Chr08	irgsp1_rep	three_prime_UTR	1054721	1054921	.	+	.	Parent=Os08t0119000-02
Chr08	irgsp1_rep	mRNA	1056181	1059731	.	+	.	ID=Os08t0119100-00;Name=Os08t0119100-00;Locus_id=Os08g0119100;Note=Protein of unknown function DUF1517 domain containing protein.;Transcript_evidence=AK353591 (DDBJ);ORF_evidence=Q6ZJ46 (UniProt);InterPro=Protein of unknown function DUF1517 (IPR010903);TENOR=Os08t0119100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	1056181	1056804	.	+	0	Parent=Os08t0119100-00
Chr08	irgsp1_rep	CDS	1057944	1058046	.	+	0	Parent=Os08t0119100-00
Chr08	irgsp1_rep	CDS	1058683	1058738	.	+	2	Parent=Os08t0119100-00
Chr08	irgsp1_rep	CDS	1058862	1059038	.	+	0	Parent=Os08t0119100-00
Chr08	irgsp1_rep	CDS	1059165	1059278	.	+	0	Parent=Os08t0119100-00
Chr08	irgsp1_rep	CDS	1059402	1059731	.	+	0	Parent=Os08t0119100-00
Chr08	irgsp1_rep	mRNA	1062322	1065642	.	+	.	ID=Os08t0119200-00;Name=Os08t0119200-00;Locus_id=Os08g0119200;Note=Protein of unknown function DUF1517 domain containing protein.;Transcript_evidence=AK353591 (DDBJ);ORF_evidence=Q6ZJ45 (UniProt);InterPro=Protein of unknown function DUF1517 (IPR010903);TENOR=Os08t0119200-00
Chr08	irgsp1_rep	CDS	1062322	1062813	.	+	0	Parent=Os08t0119200-00
Chr08	irgsp1_rep	CDS	1064440	1064531	.	+	0	Parent=Os08t0119200-00
Chr08	irgsp1_rep	CDS	1064675	1064730	.	+	1	Parent=Os08t0119200-00
Chr08	irgsp1_rep	CDS	1064860	1064864	.	+	2	Parent=Os08t0119200-00
Chr08	irgsp1_rep	three_prime_UTR	1064865	1065033	.	+	.	Parent=Os08t0119200-00
Chr08	irgsp1_rep	three_prime_UTR	1065187	1065300	.	+	.	Parent=Os08t0119200-00
Chr08	irgsp1_rep	three_prime_UTR	1065552	1065642	.	+	.	Parent=Os08t0119200-00
Chr08	irgsp1_rep	mRNA	1068710	1071501	.	+	.	ID=Os08t0119300-00;Name=Os08t0119300-00;Locus_id=Os08g0119300;Note=Conserved hypothetical protein.;Transcript_evidence=AK353591 (DDBJ);ORF_evidence=NP_001060871.1 (RefSeq);TENOR=Os08t0119300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	1068710	1069332	.	+	0	Parent=Os08t0119300-00
Chr08	irgsp1_rep	CDS	1069585	1069603	.	+	1	Parent=Os08t0119300-00
Chr08	irgsp1_rep	three_prime_UTR	1069604	1069663	.	+	.	Parent=Os08t0119300-00
Chr08	irgsp1_rep	three_prime_UTR	1070530	1070585	.	+	.	Parent=Os08t0119300-00
Chr08	irgsp1_rep	three_prime_UTR	1070744	1070905	.	+	.	Parent=Os08t0119300-00
Chr08	irgsp1_rep	three_prime_UTR	1071063	1071179	.	+	.	Parent=Os08t0119300-00
Chr08	irgsp1_rep	three_prime_UTR	1071374	1071501	.	+	.	Parent=Os08t0119300-00
Chr08	irgsp1_rep	mRNA	1075705	1076690	.	+	.	ID=Os08t0119500-01;Name=Os08t0119500-01;Locus_id=Os08g0119500;Note=Methyltransferase type 11 domain containing protein.;Transcript_evidence=AK242531 (DDBJ%2C Best hit);ORF_evidence=NP_680738.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Methyltransferase type 11 (IPR013216);NIAS_FLcDNA=J080315K03;TENOR=Os08t0119500-01;KEGG=Os08t0119500-01
Chr08	irgsp1_rep	five_prime_UTR	1075705	1075706	.	+	.	Parent=Os08t0119500-01
Chr08	irgsp1_rep	CDS	1075707	1076075	.	+	0	Parent=Os08t0119500-01
Chr08	irgsp1_rep	three_prime_UTR	1076076	1076690	.	+	.	Parent=Os08t0119500-01
Chr08	irgsp1_rep	mRNA	1084457	1086835	.	-	.	ID=Os08t0119700-00;Name=Os08t0119700-00;Locus_id=Os08g0119700;Note=CCT domain domain containing protein.;Transcript_evidence=AK370585 (DDBJ);ORF_evidence=Q6ZJ42 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=CCT domain (IPR010402);TENOR=Os08t0119700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	1086023	1086835	.	-	0	Parent=Os08t0119700-00
Chr08	irgsp1_rep	CDS	1085709	1085918	.	-	0	Parent=Os08t0119700-00
Chr08	irgsp1_rep	CDS	1084704	1084745	.	-	0	Parent=Os08t0119700-00
Chr08	irgsp1_rep	three_prime_UTR	1084457	1084703	.	-	.	Parent=Os08t0119700-00
Chr08	irgsp1_rep	mRNA	1089791	1090733	.	-	.	ID=Os08t0119800-01;Name=Os08t0119800-01;Locus_id=Os08g0119800;CGSNL Gene Symbol=PSBY;CGSNL Gene Name=PHOTOSYSTEM II SUBUNIT;Oryzabase Gene Symbol Synonym(s)=PsbY;Oryzabase Gene Name Synonym(s)=PSII subunit PsbY%2C photosystem II subunit PsbY%2C PSII core complex PsbY;Note=Similar to Photosystem II core complex proteins psbY%2C chloroplast precursor (L- arginine metabolising enzyme) (L-AME) [Contains: Photosystem II protein psbY-1 (psbY-A1)%3B Photosystem II protein psbY-2 (psbY-A2)].;Transcript_evidence=AK060602 (DDBJ%2C Best hit);ORF_evidence=NP_001147385.1 (RefSeq);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: integral to membrane (GO:0016021),Molecular Function: manganese ion binding (GO:0030145);InterPro=Photosystem II PsbY (IPR009388);NIAS_FLcDNA=001-024-H10;Oryzabase=9599;Expression=AK060602;TENOR=Os08t0119800-01;KEGG=Os08t0119800-01
Chr08	irgsp1_rep	five_prime_UTR	1090585	1090733	.	-	.	Parent=Os08t0119800-01
Chr08	irgsp1_rep	CDS	1089967	1090584	.	-	0	Parent=Os08t0119800-01
Chr08	irgsp1_rep	three_prime_UTR	1089791	1089966	.	-	.	Parent=Os08t0119800-01
Chr08	irgsp1_rep	mRNA	1089757	1090662	.	-	.	ID=Os08t0119800-02;Name=Os08t0119800-02;Locus_id=Os08g0119800;CGSNL Gene Symbol=PSBY;CGSNL Gene Name=PHOTOSYSTEM II SUBUNIT;Oryzabase Gene Symbol Synonym(s)=PsbY;Oryzabase Gene Name Synonym(s)=PSII subunit PsbY%2C photosystem II subunit PsbY%2C PSII core complex PsbY;Note=Similar to Photosystem II core complex proteins psbY%2C chloroplast precursor (L- arginine metabolising enzyme) (L-AME) [Contains: Photosystem II protein psbY-1 (psbY-A1)%3B Photosystem II protein psbY-2 (psbY-A2)].;Transcript_evidence=AK067636 (DDBJ%2C Best hit),AK068273 (DDBJ%2C Best hit);ORF_evidence=NP_001147385.1 (RefSeq);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: integral to membrane (GO:0016021),Molecular Function: manganese ion binding (GO:0030145);InterPro=Photosystem II PsbY (IPR009388);NIAS_FLcDNA=J013109P06,J013136L01;Oryzabase=9599;Expression=AK067636;TENOR=Os08t0119800-02;KEGG=Os08t0119800-02
Chr08	irgsp1_rep	five_prime_UTR	1090585	1090662	.	-	.	Parent=Os08t0119800-02
Chr08	irgsp1_rep	CDS	1089967	1090584	.	-	0	Parent=Os08t0119800-02
Chr08	irgsp1_rep	three_prime_UTR	1089757	1089966	.	-	.	Parent=Os08t0119800-02
Chr08	irgsp1_rep	mRNA	1089955	1091025	.	+	.	ID=Os08t0119900-01;Name=Os08t0119900-01;Locus_id=Os08g0119900;Note=Hypothetical protein.;Transcript_evidence=AK119899 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-180-E07;TENOR=Os08t0119900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	1089955	1089956	.	+	.	Parent=Os08t0119900-01
Chr08	irgsp1_rep	CDS	1089957	1090481	.	+	0	Parent=Os08t0119900-01
Chr08	irgsp1_rep	three_prime_UTR	1090482	1091025	.	+	.	Parent=Os08t0119900-01
Chr08	irgsp1_rep	mRNA	1091154	1094690	.	-	.	ID=Os08t0120000-01;Name=Os08t0120000-01;Locus_id=Os08g0120000;CGSNL Gene Symbol=SDH2;CGSNL Gene Name=SUCCINATE DEHYDROGENASE SUBUNIT 2;Oryzabase Gene Symbol Synonym(s)=SDHB%2C sdhB%2C RPS14%2C rps14%2C sdh2-1%2C SDH2-RPS14;Oryzabase Gene Name Synonym(s)=SUCCINATE:UBIQUINONE OXIDOREDUCTASE%2C mitochondrial succinate dehydrogenase subunit B%2C ribosomal protein S14%2C succinate dehydrogenase (iron-sulphur protein subunit)%2C chimeric SDH2-RPS14;Note=Succinate dehydrogenase iron-protein subunit (SDHB).;Transcript_evidence=AK059815 (DDBJ%2C Best hit);ORF_evidence=Q9XGC8 (UniProt);GO=Biological Process: tricarboxylic acid cycle (GO:0006099),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: iron-sulfur cluster binding (GO:0051536),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=Ferredoxin (IPR001041),Succinate dehydrogenase/fumarate reductase iron-sulphur protein (IPR004489),2Fe-2S ferredoxin%2C iron-sulphur binding site (IPR006058),Alpha-helical ferredoxin (IPR009051),Fumarate reductase%2C C-terminal (IPR012285),Beta-grasp fold%2C ferredoxin-type (IPR012675),4Fe-4S ferredoxin%2C iron-sulpur binding domain (IPR017896),4Fe-4S ferredoxin%2C iron-sulphur binding%2C conserved site (IPR017900);NIAS_FLcDNA=006-205-B11;Oryzabase=8748;Expression=AK059815;TENOR=Os08t0120000-01;KEGG=Os08t0120000-01 (EC:1.3.5.1)
Chr08	irgsp1_rep	five_prime_UTR	1094622	1094690	.	-	.	Parent=Os08t0120000-01
Chr08	irgsp1_rep	CDS	1093948	1094621	.	-	0	Parent=Os08t0120000-01
Chr08	irgsp1_rep	CDS	1091518	1091689	.	-	1	Parent=Os08t0120000-01
Chr08	irgsp1_rep	three_prime_UTR	1091154	1091401	.	-	.	Parent=Os08t0120000-01
Chr08	irgsp1_rep	mRNA	1091154	1094688	.	-	.	ID=Os08t0120000-02;Name=Os08t0120000-02;Locus_id=Os08g0120000;CGSNL Gene Symbol=SDH2;CGSNL Gene Name=SUCCINATE DEHYDROGENASE SUBUNIT 2;Oryzabase Gene Symbol Synonym(s)=SDHB%2C sdhB%2C RPS14%2C rps14%2C sdh2-1%2C SDH2-RPS14;Oryzabase Gene Name Synonym(s)=SUCCINATE:UBIQUINONE OXIDOREDUCTASE%2C mitochondrial succinate dehydrogenase subunit B%2C ribosomal protein S14%2C succinate dehydrogenase (iron-sulphur protein subunit)%2C chimeric SDH2-RPS14;Note=Succinate dehydrogenase iron-protein subunit (SDHB).;Transcript_evidence=AK104304 (DDBJ%2C Best hit);ORF_evidence=Q9XGC8 (UniProt);GO=Biological Process: tricarboxylic acid cycle (GO:0006099),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: iron-sulfur cluster binding (GO:0051536),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=Ferredoxin (IPR001041),Succinate dehydrogenase/fumarate reductase iron-sulphur protein (IPR004489),2Fe-2S ferredoxin%2C iron-sulphur binding site (IPR006058),Alpha-helical ferredoxin (IPR009051),Fumarate reductase%2C C-terminal (IPR012285),Beta-grasp fold%2C ferredoxin-type (IPR012675),4Fe-4S ferredoxin%2C iron-sulpur binding domain (IPR017896),4Fe-4S ferredoxin%2C iron-sulphur binding%2C conserved site (IPR017900);NIAS_FLcDNA=001-012-D05;Oryzabase=8748;Expression=AK104304;TENOR=Os08t0120000-02;KEGG=Os08t0120000-02 (EC:1.3.5.1)
Chr08	irgsp1_rep	five_prime_UTR	1094622	1094688	.	-	.	Parent=Os08t0120000-02
Chr08	irgsp1_rep	CDS	1093948	1094621	.	-	0	Parent=Os08t0120000-02
Chr08	irgsp1_rep	CDS	1091518	1091689	.	-	1	Parent=Os08t0120000-02
Chr08	irgsp1_rep	three_prime_UTR	1091471	1091517	.	-	.	Parent=Os08t0120000-02
Chr08	irgsp1_rep	three_prime_UTR	1091154	1091401	.	-	.	Parent=Os08t0120000-02
Chr08	irgsp1_rep	mRNA	1091212	1094688	.	-	.	ID=Os08t0120000-04;Name=Os08t0120000-04;Locus_id=Os08g0120000;CGSNL Gene Symbol=SDH2;CGSNL Gene Name=SUCCINATE DEHYDROGENASE SUBUNIT 2;Oryzabase Gene Symbol Synonym(s)=SDHB%2C sdhB%2C RPS14%2C rps14%2C sdh2-1%2C SDH2-RPS14;Oryzabase Gene Name Synonym(s)=SUCCINATE:UBIQUINONE OXIDOREDUCTASE%2C mitochondrial succinate dehydrogenase subunit B%2C ribosomal protein S14%2C succinate dehydrogenase (iron-sulphur protein subunit)%2C chimeric SDH2-RPS14;Note=Succinate dehydrogenase iron-protein subunit (SDHB).;Transcript_evidence=AK104303 (DDBJ%2C Best hit),AK099077 (DDBJ%2C Best hit),AK104421 (DDBJ%2C Best hit);ORF_evidence=Q9XGC8 (UniProt);NIAS_FLcDNA=001-011-F04,J013170D08,006-205-C04;Oryzabase=8748;TENOR=Os08t0120000-04
Chr08	irgsp1_rep	five_prime_UTR	1094622	1094688	.	-	.	Parent=Os08t0120000-04
Chr08	irgsp1_rep	CDS	1093948	1094621	.	-	0	Parent=Os08t0120000-04
Chr08	irgsp1_rep	CDS	1091518	1091689	.	-	1	Parent=Os08t0120000-04
Chr08	irgsp1_rep	three_prime_UTR	1091212	1091517	.	-	.	Parent=Os08t0120000-04
Chr08	irgsp1_rep	mRNA	1092691	1094686	.	-	.	ID=Os08t0120000-05;Name=Os08t0120000-05;Locus_id=Os08g0120000;CGSNL Gene Symbol=SDH2;CGSNL Gene Name=SUCCINATE DEHYDROGENASE SUBUNIT 2;Oryzabase Gene Symbol Synonym(s)=SDHB%2C sdhB%2C RPS14%2C rps14%2C sdh2-1%2C SDH2-RPS14;Oryzabase Gene Name Synonym(s)=SUCCINATE:UBIQUINONE OXIDOREDUCTASE%2C mitochondrial succinate dehydrogenase subunit B%2C ribosomal protein S14%2C succinate dehydrogenase (iron-sulphur protein subunit)%2C chimeric SDH2-RPS14;Note=Similar to Chimeric SDH2-RPS14 protein.;Transcript_evidence=AK102607 (DDBJ%2C Best hit),AK059789 (DDBJ%2C Best hit);ORF_evidence=Q9XGC7 (UniProt);GO=Biological Process: tricarboxylic acid cycle (GO:0006099),Biological Process: translation (GO:0006412),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: iron-sulfur cluster binding (GO:0051536),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=Ferredoxin (IPR001041),Ribosomal protein S14 (IPR001209),Succinate dehydrogenase/fumarate reductase iron-sulphur protein (IPR004489),2Fe-2S ferredoxin%2C iron-sulphur binding site (IPR006058),Alpha-helical ferredoxin (IPR009051),Fumarate reductase%2C C-terminal (IPR012285),Beta-grasp fold%2C ferredoxin-type (IPR012675),4Fe-4S ferredoxin%2C iron-sulpur binding domain (IPR017896),4Fe-4S ferredoxin%2C iron-sulphur binding%2C conserved site (IPR017900),Ribosomal protein S14%2C conserved site (IPR018271);NIAS_FLcDNA=J033099B04,006-204-D12;Oryzabase=8748;Expression=AK102607;TENOR=Os08t0120000-05;KEGG=Os08t0120000-05 (EC:1.3.5.1)
Chr08	irgsp1_rep	five_prime_UTR	1094622	1094686	.	-	.	Parent=Os08t0120000-05
Chr08	irgsp1_rep	CDS	1093948	1094621	.	-	0	Parent=Os08t0120000-05
Chr08	irgsp1_rep	CDS	1092829	1093207	.	-	1	Parent=Os08t0120000-05
Chr08	irgsp1_rep	three_prime_UTR	1092691	1092828	.	-	.	Parent=Os08t0120000-05
Chr08	irgsp1_rep	mRNA	1111315	1115778	.	+	.	ID=Os08t0120200-01;Name=Os08t0120200-01;Locus_id=Os08g0120200;Note=ATPase%2C AAA+ type%2C core domain containing protein.;Transcript_evidence=AK103562 (DDBJ%2C Best hit);ORF_evidence=B8BAD4 (UniProt);GO=Biological Process: DNA replication (GO:0006260),Cellular Component: DNA polymerase III complex (GO:0009360),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed DNA polymerase activity (GO:0003887),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),DNA polymerase III%2C clamp loader complex%2C gamma/delta/delta subunit%2C C-terminal (IPR008921),DNA polymerase III%2C subunit gamma/ tau (IPR012763),DNA polymerase III%2C gamma subunit%2C domain III (IPR022754);NIAS_FLcDNA=J033132K03;TENOR=Os08t0120200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	1111315	1111343	.	+	.	Parent=Os08t0120200-01
Chr08	irgsp1_rep	CDS	1111344	1111481	.	+	0	Parent=Os08t0120200-01
Chr08	irgsp1_rep	CDS	1112178	1113353	.	+	0	Parent=Os08t0120200-01
Chr08	irgsp1_rep	CDS	1113469	1113685	.	+	0	Parent=Os08t0120200-01
Chr08	irgsp1_rep	CDS	1113928	1114113	.	+	2	Parent=Os08t0120200-01
Chr08	irgsp1_rep	CDS	1114269	1114478	.	+	2	Parent=Os08t0120200-01
Chr08	irgsp1_rep	CDS	1114897	1115531	.	+	2	Parent=Os08t0120200-01
Chr08	irgsp1_rep	three_prime_UTR	1115532	1115778	.	+	.	Parent=Os08t0120200-01
Chr08	irgsp1_rep	mRNA	1117155	1119596	.	+	.	ID=Os08t0120301-00;Name=Os08t0120301-00;Locus_id=Os08g0120301;Note=Hypothetical gene.;Transcript_evidence=AK241704 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;TENOR=Os08t0120301-00;KEGG=Os08t0120301-00
Chr08	irgsp1_rep	five_prime_UTR	1117155	1117161	.	+	.	Parent=Os08t0120301-00
Chr08	irgsp1_rep	CDS	1117162	1117415	.	+	0	Parent=Os08t0120301-00
Chr08	irgsp1_rep	CDS	1117811	1117931	.	+	1	Parent=Os08t0120301-00
Chr08	irgsp1_rep	three_prime_UTR	1117932	1118402	.	+	.	Parent=Os08t0120301-00
Chr08	irgsp1_rep	three_prime_UTR	1118414	1119596	.	+	.	Parent=Os08t0120301-00
Chr08	irgsp1_rep	mRNA	1121680	1126438	.	-	.	ID=Os08t0120500-01;Name=Os08t0120500-01;Locus_id=Os08g0120500;Note=Similar to Topoisomerase-like protein.;Transcript_evidence=AK102447 (DDBJ%2C Best hit);ORF_evidence=A2YQR1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Initiation factor eIF-4 gamma%2C MA3 (IPR003891),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033093O03;Expression=AK102447;TENOR=Os08t0120500-01;KEGG=Os08t0120500-01
Chr08	irgsp1_rep	five_prime_UTR	1126294	1126438	.	-	.	Parent=Os08t0120500-01
Chr08	irgsp1_rep	five_prime_UTR	1126167	1126199	.	-	.	Parent=Os08t0120500-01
Chr08	irgsp1_rep	CDS	1125902	1126166	.	-	0	Parent=Os08t0120500-01
Chr08	irgsp1_rep	CDS	1124148	1124242	.	-	2	Parent=Os08t0120500-01
Chr08	irgsp1_rep	CDS	1122139	1123929	.	-	0	Parent=Os08t0120500-01
Chr08	irgsp1_rep	three_prime_UTR	1121680	1122138	.	-	.	Parent=Os08t0120500-01
Chr08	irgsp1_rep	mRNA	1121769	1125964	.	-	.	ID=Os08t0120500-02;Name=Os08t0120500-02;Locus_id=Os08g0120500;Note=Similar to predicted protein.;Transcript_evidence=AK067413 (DDBJ%2C Best hit);ORF_evidence=A2YQR1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Initiation factor eIF-4 gamma%2C MA3 (IPR003891),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013100H24;Expression=AK067413;TENOR=Os08t0120500-02;KEGG=Os08t0120500-02
Chr08	irgsp1_rep	five_prime_UTR	1125963	1125964	.	-	.	Parent=Os08t0120500-02
Chr08	irgsp1_rep	CDS	1125902	1125962	.	-	0	Parent=Os08t0120500-02
Chr08	irgsp1_rep	CDS	1124148	1124242	.	-	2	Parent=Os08t0120500-02
Chr08	irgsp1_rep	CDS	1122139	1123929	.	-	0	Parent=Os08t0120500-02
Chr08	irgsp1_rep	three_prime_UTR	1121769	1122138	.	-	.	Parent=Os08t0120500-02
Chr08	irgsp1_rep	mRNA	1121772	1122766	.	-	.	ID=Os08t0120500-03;Name=Os08t0120500-03;Locus_id=Os08g0120500;Note=Hypothetical conserved gene.;Transcript_evidence=AK104476 (DDBJ%2C Best hit),AK060858 (DDBJ%2C Best hit);ORF_evidence=A2YQR1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Initiation factor eIF-4 gamma%2C MA3 (IPR003891),Armadillo-type fold (IPR016024);NIAS_FLcDNA=006-301-F02,001-034-F06;Expression=AK104476;TENOR=Os08t0120500-03;KEGG=Os08t0120500-03
Chr08	irgsp1_rep	five_prime_UTR	1122766	1122766	.	-	.	Parent=Os08t0120500-03
Chr08	irgsp1_rep	CDS	1122139	1122765	.	-	0	Parent=Os08t0120500-03
Chr08	irgsp1_rep	three_prime_UTR	1121772	1122138	.	-	.	Parent=Os08t0120500-03
Chr08	irgsp1_rep	mRNA	1123079	1125981	.	+	.	ID=Os08t0120550-00;Name=Os08t0120550-00;Locus_id=Os08g0120550;Note=Non-protein coding transcript.;Transcript_evidence=BT085184 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0120550-00
Chr08	irgsp1_rep	exon	1123079	1123916	.	+	.	Parent=Os08t0120550-00
Chr08	irgsp1_rep	exon	1124133	1124220	.	+	.	Parent=Os08t0120550-00
Chr08	irgsp1_rep	exon	1125881	1125981	.	+	.	Parent=Os08t0120550-00
Chr08	irgsp1_rep	mRNA	1127884	1129553	.	-	.	ID=Os08t0120600-01;Name=Os08t0120600-01;Locus_id=Os08g0120600;Note=Similar to Fructose-bisphosphate aldolase%2C cytoplasmic isozyme (EC 4.1.2.13).;Transcript_evidence=AK104952 (DDBJ%2C Best hit),AK069887 (DDBJ%2C Best hit);ORF_evidence=A2YQR2 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: fructose-bisphosphate aldolase activity (GO:0004332);InterPro=Fructose-bisphosphate aldolase%2C class-I (IPR000741),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=001-110-D12,J023038B06;Expression=AK104952;TENOR=Os08t0120600-01;KEGG=Os08t0120600-01 (EC:4.1.2.13)
Chr08	irgsp1_rep	five_prime_UTR	1129460	1129553	.	-	.	Parent=Os08t0120600-01
Chr08	irgsp1_rep	CDS	1129432	1129459	.	-	0	Parent=Os08t0120600-01
Chr08	irgsp1_rep	CDS	1128107	1129167	.	-	2	Parent=Os08t0120600-01
Chr08	irgsp1_rep	three_prime_UTR	1127884	1128106	.	-	.	Parent=Os08t0120600-01
Chr08	irgsp1_rep	mRNA	1148943	1150555	.	+	.	ID=Os08t0120900-01;Name=Os08t0120900-01;Locus_id=Os08g0120900;Note=Protein of unknown function DUF247%2C plant family protein.;Transcript_evidence=AK111473 (DDBJ%2C Best hit);ORF_evidence=B8BAD6 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);NIAS_FLcDNA=002-183-F03;Expression=AK111473;TENOR=Os08t0120900-01;KEGG=Os08t0120900-01
Chr08	irgsp1_rep	five_prime_UTR	1148943	1149019	.	+	.	Parent=Os08t0120900-01
Chr08	irgsp1_rep	CDS	1149020	1150387	.	+	0	Parent=Os08t0120900-01
Chr08	irgsp1_rep	three_prime_UTR	1150388	1150555	.	+	.	Parent=Os08t0120900-01
Chr08	irgsp1_rep	mRNA	1155873	1156250	.	+	.	ID=Os08t0121275-00;Name=Os08t0121275-00;Locus_id=Os08g0121275;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6YPE8 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);TENOR=Os08t0121275-00;KEGG=Os08t0121275-00
Chr08	irgsp1_rep	CDS	1155873	1156250	.	+	0	Parent=Os08t0121275-00
Chr08	irgsp1_rep	mRNA	1179268	1179715	.	+	.	ID=Os08t0121400-00;Name=Os08t0121400-00;Locus_id=Os08g0121400;Note=Similar to ribosome-like protein.;Transcript_evidence=AK376433 (DDBJ);ORF_evidence=NP_001148414.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S21 (IPR001911);TENOR=Os08t0121400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	1179268	1179319	.	+	.	Parent=Os08t0121400-00
Chr08	irgsp1_rep	CDS	1179320	1179685	.	+	0	Parent=Os08t0121400-00
Chr08	irgsp1_rep	three_prime_UTR	1179686	1179715	.	+	.	Parent=Os08t0121400-00
Chr08	irgsp1_rep	mRNA	1182738	1187176	.	-	.	ID=Os08t0121500-00;Name=Os08t0121500-00;Locus_id=Os08g0121500;Note=Protein of unknown function DUF247%2C plant domain containing protein.;Transcript_evidence=BT060499 (DDBJ);ORF_evidence=Q6YRM8 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);TENOR=Os08t0121500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	1186352	1187176	.	-	0	Parent=Os08t0121500-00
Chr08	irgsp1_rep	three_prime_UTR	1186000	1186351	.	-	.	Parent=Os08t0121500-00
Chr08	irgsp1_rep	three_prime_UTR	1182738	1182862	.	-	.	Parent=Os08t0121500-00
Chr08	irgsp1_rep	mRNA	1192971	1194665	.	+	.	ID=Os08t0121800-01;Name=Os08t0121800-01;Locus_id=Os08g0121800;Note=Ribosomal protein S21 family protein.;Transcript_evidence=AK110693 (DDBJ%2C Best hit);ORF_evidence=NP_001148414.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S21 (IPR001911);NIAS_FLcDNA=002-170-A06;Expression=AK110693;TENOR=Os08t0121800-01;KEGG=Os08t0121800-01
Chr08	irgsp1_rep	five_prime_UTR	1192971	1193022	.	+	.	Parent=Os08t0121800-01
Chr08	irgsp1_rep	CDS	1193023	1193387	.	+	0	Parent=Os08t0121800-01
Chr08	irgsp1_rep	CDS	1194271	1194388	.	+	1	Parent=Os08t0121800-01
Chr08	irgsp1_rep	three_prime_UTR	1194389	1194665	.	+	.	Parent=Os08t0121800-01
Chr08	irgsp1_rep	mRNA	1197186	1200092	.	-	.	ID=Os08t0121900-01;Name=Os08t0121900-01;Locus_id=Os08g0121900;Note=Protein of unknown function DUF23 family protein.;Transcript_evidence=AK101512 (DDBJ%2C Best hit);ORF_evidence=B9SLR1 (UniProt);InterPro=Domain of unknown function DUF23 (IPR008166);NIAS_FLcDNA=J033046D19;Expression=AK101512;TENOR=Os08t0121900-01;KEGG=Os08t0121900-01
Chr08	irgsp1_rep	five_prime_UTR	1199876	1200092	.	-	.	Parent=Os08t0121900-01
Chr08	irgsp1_rep	CDS	1199683	1199875	.	-	0	Parent=Os08t0121900-01
Chr08	irgsp1_rep	CDS	1197475	1199036	.	-	2	Parent=Os08t0121900-01
Chr08	irgsp1_rep	three_prime_UTR	1197186	1197474	.	-	.	Parent=Os08t0121900-01
Chr08	irgsp1_rep	mRNA	1197186	1200087	.	-	.	ID=Os08t0121900-02;Name=Os08t0121900-02;Locus_id=Os08g0121900;Note=Similar to predicted protein.;Transcript_evidence=AK065395 (DDBJ%2C Best hit);ORF_evidence=Q6YRM6 (UniProt);InterPro=Domain of unknown function DUF23 (IPR008166);NIAS_FLcDNA=J013022D06;Expression=AK065395;TENOR=Os08t0121900-02;KEGG=Os08t0121900-02
Chr08	irgsp1_rep	five_prime_UTR	1199943	1200087	.	-	.	Parent=Os08t0121900-02
Chr08	irgsp1_rep	CDS	1199880	1199942	.	-	0	Parent=Os08t0121900-02
Chr08	irgsp1_rep	CDS	1197475	1199001	.	-	0	Parent=Os08t0121900-02
Chr08	irgsp1_rep	three_prime_UTR	1197186	1197474	.	-	.	Parent=Os08t0121900-02
Chr08	irgsp1_rep	mRNA	1197233	1199883	.	+	.	ID=Os08t0121925-00;Name=Os08t0121925-00;Locus_id=Os08g0121925;Note=Hypothetical protein.;Transcript_evidence=tplb0024j10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0121925-00
Chr08	irgsp1_rep	five_prime_UTR	1197233	1198884	.	+	.	Parent=Os08t0121925-00
Chr08	irgsp1_rep	CDS	1198885	1199036	.	+	0	Parent=Os08t0121925-00
Chr08	irgsp1_rep	CDS	1199683	1199883	.	+	1	Parent=Os08t0121925-00
Chr08	irgsp1_rep	mRNA	1202329	1202761	.	+	.	ID=Os08t0121950-00;Name=Os08t0121950-00;Locus_id=Os08g0121950;Note=Non-protein coding transcript.;Transcript_evidence=EU971712 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0121950-00
Chr08	irgsp1_rep	exon	1202329	1202761	.	+	.	Parent=Os08t0121950-00
Chr08	irgsp1_rep	mRNA	1205000	1205324	.	+	.	ID=Os08t0121975-00;Name=Os08t0121975-00;Locus_id=Os08g0121975;Note=Conserved hypothetical protein.;Transcript_evidence=EU945885 (DDBJ);ORF_evidence=NP_001144919.1 (RefSeq);TENOR=Os08t0121975-00
Chr08	irgsp1_rep	five_prime_UTR	1205000	1205132	.	+	.	Parent=Os08t0121975-00
Chr08	irgsp1_rep	CDS	1205133	1205324	.	+	0	Parent=Os08t0121975-00
Chr08	irgsp1_rep	mRNA	1205886	1209749	.	-	.	ID=Os08t0122000-01;Name=Os08t0122000-01;Locus_id=Os08g0122000;CGSNL Gene Symbol=PP2A-B'THETA;CGSNL Gene Name=PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' THETA;Oryzabase Gene Symbol Synonym(s)=OsPP2A-B'theta%2C OsB'theta%2C PP2A-B'theta%2C OsPP2A-B'theta%2C OsB'theta;Oryzabase Gene Name Synonym(s)=protein phosphatase 2A B'theta subunit%2C PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' theta%2C protein phosphatase 2A B'theta subunit;Note=Similar to Protein phosphatase 2A B' regulatory subunit.;Transcript_evidence=AK067159 (DDBJ%2C Best hit);ORF_evidence=E5GC68 (UniProt);GO=Biological Process: signal transduction (GO:0007165),Cellular Component: protein phosphatase type 2A complex (GO:0000159),Molecular Function: binding (GO:0005488),Molecular Function: protein phosphatase type 2A regulator activity (GO:0008601);InterPro=Protein phosphatase 2A%2C regulatory B subunit%2C B56 (IPR002554),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013096J23;Oryzabase=13916;TENOR=Os08t0122000-01
Chr08	irgsp1_rep	five_prime_UTR	1209390	1209749	.	-	.	Parent=Os08t0122000-01
Chr08	irgsp1_rep	five_prime_UTR	1209244	1209300	.	-	.	Parent=Os08t0122000-01
Chr08	irgsp1_rep	CDS	1208038	1209243	.	-	0	Parent=Os08t0122000-01
Chr08	irgsp1_rep	CDS	1206466	1206810	.	-	0	Parent=Os08t0122000-01
Chr08	irgsp1_rep	three_prime_UTR	1205886	1206465	.	-	.	Parent=Os08t0122000-01
Chr08	irgsp1_rep	mRNA	1205891	1209490	.	-	.	ID=Os08t0122000-02;Name=Os08t0122000-02;Locus_id=Os08g0122000;CGSNL Gene Symbol=PP2A-B'THETA;CGSNL Gene Name=PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' THETA;Oryzabase Gene Symbol Synonym(s)=OsPP2A-B'theta%2C OsB'theta%2C PP2A-B'theta%2C OsPP2A-B'theta%2C OsB'theta;Oryzabase Gene Name Synonym(s)=protein phosphatase 2A B'theta subunit%2C PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B' theta%2C protein phosphatase 2A B'theta subunit;Note=Similar to Protein phosphatase 2A B' regulatory subunit.;Transcript_evidence=AK060794 (DDBJ%2C Best hit);ORF_evidence=E5GC68 (UniProt);GO=Biological Process: signal transduction (GO:0007165),Cellular Component: protein phosphatase type 2A complex (GO:0000159),Molecular Function: binding (GO:0005488),Molecular Function: protein phosphatase type 2A regulator activity (GO:0008601);InterPro=Protein phosphatase 2A%2C regulatory B subunit%2C B56 (IPR002554),Armadillo-type fold (IPR016024);NIAS_FLcDNA=001-033-E07;Oryzabase=13916;TENOR=Os08t0122000-02
Chr08	irgsp1_rep	five_prime_UTR	1209390	1209490	.	-	.	Parent=Os08t0122000-02
Chr08	irgsp1_rep	five_prime_UTR	1209244	1209300	.	-	.	Parent=Os08t0122000-02
Chr08	irgsp1_rep	CDS	1208038	1209243	.	-	0	Parent=Os08t0122000-02
Chr08	irgsp1_rep	CDS	1206466	1206810	.	-	0	Parent=Os08t0122000-02
Chr08	irgsp1_rep	three_prime_UTR	1205891	1206465	.	-	.	Parent=Os08t0122000-02
Chr08	irgsp1_rep	mRNA	1215576	1216317	.	+	.	ID=Os08t0122201-00;Name=Os08t0122201-00;Locus_id=Os08g0122201;Note=Hypothetical conserved gene.;Transcript_evidence=CU406946 (DDBJ%2C Best hit);ORF_evidence=B8BAE2 (UniProt);TENOR=Os08t0122201-00;KEGG=Os08t0122201-00
Chr08	irgsp1_rep	five_prime_UTR	1215576	1215744	.	+	.	Parent=Os08t0122201-00
Chr08	irgsp1_rep	CDS	1215745	1215775	.	+	0	Parent=Os08t0122201-00
Chr08	irgsp1_rep	CDS	1215889	1216034	.	+	2	Parent=Os08t0122201-00
Chr08	irgsp1_rep	three_prime_UTR	1216035	1216086	.	+	.	Parent=Os08t0122201-00
Chr08	irgsp1_rep	three_prime_UTR	1216103	1216317	.	+	.	Parent=Os08t0122201-00
Chr08	irgsp1_rep	mRNA	1230097	1230772	.	-	.	ID=Os08t0122400-01;Name=Os08t0122400-01;Locus_id=Os08g0122400;Note=Hypothetical protein.;Transcript_evidence=AK071781 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J023110A01;Expression=AK071781;TENOR=Os08t0122400-01;KEGG=Os08t0122400-01
Chr08	irgsp1_rep	five_prime_UTR	1230731	1230772	.	-	.	Parent=Os08t0122400-01
Chr08	irgsp1_rep	CDS	1230341	1230730	.	-	0	Parent=Os08t0122400-01
Chr08	irgsp1_rep	three_prime_UTR	1230097	1230340	.	-	.	Parent=Os08t0122400-01
Chr08	irgsp1_rep	mRNA	1238780	1239659	.	-	.	ID=Os08t0122700-01;Name=Os08t0122700-01;Locus_id=Os08g0122700;Note=Hypothetical protein.;Transcript_evidence=AK111089 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-175-F12;Expression=AK111089;TENOR=Os08t0122700-01;KEGG=Os08t0122700-01
Chr08	irgsp1_rep	five_prime_UTR	1239622	1239659	.	-	.	Parent=Os08t0122700-01
Chr08	irgsp1_rep	CDS	1239184	1239621	.	-	0	Parent=Os08t0122700-01
Chr08	irgsp1_rep	three_prime_UTR	1238780	1239183	.	-	.	Parent=Os08t0122700-01
Chr08	irgsp1_rep	mRNA	1239097	1250358	.	+	.	ID=Os08t0122800-01;Name=Os08t0122800-01;Locus_id=Os08g0122800;Note=Conserved hypothetical protein.;Transcript_evidence=AK066476 (DDBJ%2C Best hit);ORF_evidence=B8BG72 (UniProt);NIAS_FLcDNA=J013069O07;TENOR=Os08t0122800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	1239097	1239230	.	+	.	Parent=Os08t0122800-01
Chr08	irgsp1_rep	five_prime_UTR	1240955	1241690	.	+	.	Parent=Os08t0122800-01
Chr08	irgsp1_rep	five_prime_UTR	1241782	1241886	.	+	.	Parent=Os08t0122800-01
Chr08	irgsp1_rep	five_prime_UTR	1242244	1242332	.	+	.	Parent=Os08t0122800-01
Chr08	irgsp1_rep	five_prime_UTR	1242817	1242857	.	+	.	Parent=Os08t0122800-01
Chr08	irgsp1_rep	five_prime_UTR	1244151	1244254	.	+	.	Parent=Os08t0122800-01
Chr08	irgsp1_rep	five_prime_UTR	1244341	1244716	.	+	.	Parent=Os08t0122800-01
Chr08	irgsp1_rep	five_prime_UTR	1247918	1247989	.	+	.	Parent=Os08t0122800-01
Chr08	irgsp1_rep	five_prime_UTR	1248531	1248624	.	+	.	Parent=Os08t0122800-01
Chr08	irgsp1_rep	five_prime_UTR	1249496	1249558	.	+	.	Parent=Os08t0122800-01
Chr08	irgsp1_rep	CDS	1249559	1249576	.	+	0	Parent=Os08t0122800-01
Chr08	irgsp1_rep	CDS	1249648	1249881	.	+	0	Parent=Os08t0122800-01
Chr08	irgsp1_rep	three_prime_UTR	1249882	1250358	.	+	.	Parent=Os08t0122800-01
Chr08	irgsp1_rep	mRNA	1241779	1245568	.	+	.	ID=Os08t0122800-02;Name=Os08t0122800-02;Locus_id=Os08g0122800;Note=Kringle%2C conserved site domain containing protein.;Transcript_evidence=AK060046 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=006-304-G10;Expression=AK060046;TENOR=Os08t0122800-02;KEGG=Os08t0122800-02
Chr08	irgsp1_rep	five_prime_UTR	1241779	1241886	.	+	.	Parent=Os08t0122800-02
Chr08	irgsp1_rep	five_prime_UTR	1242244	1242332	.	+	.	Parent=Os08t0122800-02
Chr08	irgsp1_rep	five_prime_UTR	1242817	1242857	.	+	.	Parent=Os08t0122800-02
Chr08	irgsp1_rep	five_prime_UTR	1244151	1244254	.	+	.	Parent=Os08t0122800-02
Chr08	irgsp1_rep	five_prime_UTR	1244341	1244546	.	+	.	Parent=Os08t0122800-02
Chr08	irgsp1_rep	CDS	1244547	1244716	.	+	0	Parent=Os08t0122800-02
Chr08	irgsp1_rep	CDS	1245090	1245264	.	+	1	Parent=Os08t0122800-02
Chr08	irgsp1_rep	three_prime_UTR	1245265	1245568	.	+	.	Parent=Os08t0122800-02
Chr08	irgsp1_rep	mRNA	1254648	1255181	.	+	.	ID=Os08t0122900-01;Name=Os08t0122900-01;Locus_id=Os08g0122900;Note=Conserved hypothetical protein.;Transcript_evidence=AK288623 (DDBJ%2C Best hit);ORF_evidence=Q6YX29 (UniProt);NIAS_FLcDNA=J090054G07;TENOR=Os08t0122900-01;KEGG=Os08t0122900-01
Chr08	irgsp1_rep	five_prime_UTR	1254648	1254659	.	+	.	Parent=Os08t0122900-01
Chr08	irgsp1_rep	CDS	1254660	1254738	.	+	0	Parent=Os08t0122900-01
Chr08	irgsp1_rep	CDS	1254910	1255076	.	+	2	Parent=Os08t0122900-01
Chr08	irgsp1_rep	three_prime_UTR	1255077	1255181	.	+	.	Parent=Os08t0122900-01
Chr08	irgsp1_rep	mRNA	1280271	1280804	.	-	.	ID=Os08t0123101-01;Name=Os08t0123101-01;Locus_id=Os08g0123101;Note=Conserved hypothetical protein.;Transcript_evidence=AK288623 (DDBJ%2C Best hit);ORF_evidence=Q6YX29 (UniProt);NIAS_FLcDNA=J090054G07;TENOR=Os08t0123101-01;KEGG=Os08t0123101-01
Chr08	irgsp1_rep	five_prime_UTR	1280793	1280804	.	-	.	Parent=Os08t0123101-01
Chr08	irgsp1_rep	CDS	1280714	1280792	.	-	0	Parent=Os08t0123101-01
Chr08	irgsp1_rep	CDS	1280376	1280542	.	-	2	Parent=Os08t0123101-01
Chr08	irgsp1_rep	three_prime_UTR	1280271	1280375	.	-	.	Parent=Os08t0123101-01
Chr08	irgsp1_rep	mRNA	1283861	1286496	.	-	.	ID=Os08t0123300-01;Name=Os08t0123300-01;Locus_id=Os08g0123300;Note=Conserved hypothetical protein.;Transcript_evidence=AK099416 (DDBJ%2C Best hit);ORF_evidence=NP_001065879.2 (RefSeq);NIAS_FLcDNA=J013006G19;Expression=AK099416;TENOR=Os08t0123300-01;KEGG=Os08t0123300-01
Chr08	irgsp1_rep	five_prime_UTR	1286360	1286496	.	-	.	Parent=Os08t0123300-01
Chr08	irgsp1_rep	CDS	1286343	1286359	.	-	0	Parent=Os08t0123300-01
Chr08	irgsp1_rep	CDS	1286065	1286226	.	-	1	Parent=Os08t0123300-01
Chr08	irgsp1_rep	CDS	1285358	1285452	.	-	1	Parent=Os08t0123300-01
Chr08	irgsp1_rep	CDS	1284969	1285012	.	-	2	Parent=Os08t0123300-01
Chr08	irgsp1_rep	three_prime_UTR	1284951	1284968	.	-	.	Parent=Os08t0123300-01
Chr08	irgsp1_rep	three_prime_UTR	1284775	1284866	.	-	.	Parent=Os08t0123300-01
Chr08	irgsp1_rep	three_prime_UTR	1284377	1284463	.	-	.	Parent=Os08t0123300-01
Chr08	irgsp1_rep	three_prime_UTR	1283861	1284151	.	-	.	Parent=Os08t0123300-01
Chr08	irgsp1_rep	mRNA	1287119	1287499	.	+	.	ID=Os08t0123400-00;Name=Os08t0123400-00;Locus_id=Os08g0123400;Note=Similar to predicted protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6YX28 (UniProt);TENOR=Os08t0123400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	1287119	1287499	.	+	0	Parent=Os08t0123400-00
Chr08	irgsp1_rep	mRNA	1290371	1292782	.	-	.	ID=Os08t0123600-01;Name=Os08t0123600-01;Locus_id=Os08g0123600;Note=Conserved hypothetical protein.;Transcript_evidence=AK240789 (DDBJ%2C Best hit);ORF_evidence=Q6YX25 (UniProt);NIAS_FLcDNA=J053098J18;TENOR=Os08t0123600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	1292595	1292782	.	-	.	Parent=Os08t0123600-01
Chr08	irgsp1_rep	CDS	1292178	1292594	.	-	0	Parent=Os08t0123600-01
Chr08	irgsp1_rep	three_prime_UTR	1290371	1292177	.	-	.	Parent=Os08t0123600-01
Chr08	irgsp1_rep	mRNA	1301245	1303225	.	+	.	ID=Os08t0123833-00;Name=Os08t0123833-00;Locus_id=Os08g0123833;Note=Hypothetical protein.;Transcript_evidence=tplb0022l18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0123833-00
Chr08	irgsp1_rep	five_prime_UTR	1301245	1301851	.	+	.	Parent=Os08t0123833-00
Chr08	irgsp1_rep	five_prime_UTR	1301938	1302588	.	+	.	Parent=Os08t0123833-00
Chr08	irgsp1_rep	CDS	1302589	1303225	.	+	0	Parent=Os08t0123833-00
Chr08	irgsp1_rep	mRNA	1301947	1302912	.	-	.	ID=Os08t0123900-00;Name=Os08t0123900-00;Locus_id=Os08g0123900;Note=Similar to cDNA%2C clone: J065032N17%2C full insert sequence.;Transcript_evidence=ab initio prediction;ORF_evidence=B7F8F0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Cellular Component: membrane (GO:0016020),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Myelin P0 protein (IPR000920),Legume lectin%2C beta chain (IPR001220),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os08t0123900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	1301947	1302912	.	-	0	Parent=Os08t0123900-00
Chr08	irgsp1_rep	mRNA	1310641	1313280	.	-	.	ID=Os08t0124000-01;Name=Os08t0124000-01;Locus_id=Os08g0124000;Oryzabase Gene Name Synonym(s)=Lectin protein kinase domain-containing protein;Note=Similar to Resistance protein candidate (Fragment).;Transcript_evidence=AK063293 (DDBJ%2C Best hit);ORF_evidence=B7F8F0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Legume lectin%2C beta chain%2C Mn/Ca-binding site (IPR019825);NIAS_FLcDNA=001-113-E07;Oryzabase=9615;Expression=AK063293;TENOR=Os08t0124000-01;KEGG=Os08t0124000-01
Chr08	irgsp1_rep	five_prime_UTR	1313218	1313280	.	-	.	Parent=Os08t0124000-01
Chr08	irgsp1_rep	CDS	1311725	1313217	.	-	0	Parent=Os08t0124000-01
Chr08	irgsp1_rep	CDS	1310953	1311616	.	-	1	Parent=Os08t0124000-01
Chr08	irgsp1_rep	CDS	1310816	1310818	.	-	0	Parent=Os08t0124000-01
Chr08	irgsp1_rep	three_prime_UTR	1310641	1310815	.	-	.	Parent=Os08t0124000-01
Chr08	irgsp1_rep	mRNA	1310620	1313271	.	-	.	ID=Os08t0124000-02;Name=Os08t0124000-02;Locus_id=Os08g0124000;Oryzabase Gene Name Synonym(s)=Lectin protein kinase domain-containing protein;Note=Hypothetical conserved gene.;Transcript_evidence=AK067378 (DDBJ%2C Best hit);ORF_evidence=B7F8F0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Legume lectin%2C beta chain%2C Mn/Ca-binding site (IPR019825);NIAS_FLcDNA=J013102K23;Oryzabase=9615;Expression=AK067378;TENOR=Os08t0124000-02;KEGG=Os08t0124000-02
Chr08	irgsp1_rep	five_prime_UTR	1313218	1313271	.	-	.	Parent=Os08t0124000-02
Chr08	irgsp1_rep	CDS	1311725	1313217	.	-	0	Parent=Os08t0124000-02
Chr08	irgsp1_rep	CDS	1310857	1311616	.	-	1	Parent=Os08t0124000-02
Chr08	irgsp1_rep	three_prime_UTR	1310620	1310856	.	-	.	Parent=Os08t0124000-02
Chr08	irgsp1_rep	mRNA	1310807	1313159	.	+	.	ID=Os08t0124050-00;Name=Os08t0124050-00;Locus_id=Os08g0124050;Note=Hypothetical protein.;Transcript_evidence=tplb0022l18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0124050-00
Chr08	irgsp1_rep	five_prime_UTR	1310807	1311632	.	+	.	Parent=Os08t0124050-00
Chr08	irgsp1_rep	five_prime_UTR	1311746	1312362	.	+	.	Parent=Os08t0124050-00
Chr08	irgsp1_rep	CDS	1312363	1313159	.	+	0	Parent=Os08t0124050-00
Chr08	irgsp1_rep	mRNA	1313605	1315206	.	-	.	ID=Os08t0124100-01;Name=Os08t0124100-01;Locus_id=Os08g0124100;Note=Concanavalin A-like lectin/glucanase%2C subgroup domain containing protein.;Transcript_evidence=AK108590 (DDBJ%2C Best hit);ORF_evidence=B7F8F0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine-threonine/tyrosine-protein kinase (IPR001245),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Legume lectin%2C beta chain%2C Mn/Ca-binding site (IPR019825);NIAS_FLcDNA=002-146-D02;Expression=AK108590;TENOR=Os08t0124100-01;KEGG=Os08t0124100-01
Chr08	irgsp1_rep	five_prime_UTR	1315114	1315206	.	-	.	Parent=Os08t0124100-01
Chr08	irgsp1_rep	CDS	1313656	1315113	.	-	0	Parent=Os08t0124100-01
Chr08	irgsp1_rep	three_prime_UTR	1313605	1313655	.	-	.	Parent=Os08t0124100-01
Chr08	irgsp1_rep	mRNA	1315840	1316196	.	-	.	ID=Os08t0124250-00;Name=Os08t0124250-00;Locus_id=Os08g0124250;Note=EF-hand-like domain domain containing protein.;Transcript_evidence=FP095282 (DDBJ);ORF_evidence=A2X2R4 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand-like domain (IPR011992);TENOR=Os08t0124250-00
Chr08	irgsp1_rep	five_prime_UTR	1316122	1316196	.	-	.	Parent=Os08t0124250-00
Chr08	irgsp1_rep	CDS	1316044	1316121	.	-	0	Parent=Os08t0124250-00
Chr08	irgsp1_rep	three_prime_UTR	1315840	1316043	.	-	.	Parent=Os08t0124250-00
Chr08	irgsp1_rep	mRNA	1340788	1343397	.	-	.	ID=Os08t0124500-01;Name=Os08t0124500-01;Locus_id=Os08g0124500;Oryzabase Gene Symbol Synonym(s)=RLK;Oryzabase Gene Name Synonym(s)=membrane-anchored receptor-like kinase;Note=Similar to Resistance protein candidate (Fragment).;Transcript_evidence=AK059130 (DDBJ%2C Best hit);ORF_evidence=B7F8F0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C alpha chain%2C conserved site (IPR000985),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Legume lectin%2C beta chain%2C Mn/Ca-binding site (IPR019825);NIAS_FLcDNA=001-022-G07;Oryzabase=22539;TENOR=Os08t0124500-01
Chr08	irgsp1_rep	five_prime_UTR	1343297	1343397	.	-	.	Parent=Os08t0124500-01
Chr08	irgsp1_rep	CDS	1341936	1343296	.	-	0	Parent=Os08t0124500-01
Chr08	irgsp1_rep	CDS	1341094	1341763	.	-	1	Parent=Os08t0124500-01
Chr08	irgsp1_rep	three_prime_UTR	1340788	1341093	.	-	.	Parent=Os08t0124500-01
Chr08	irgsp1_rep	mRNA	1340788	1343340	.	-	.	ID=Os08t0124500-02;Name=Os08t0124500-02;Locus_id=Os08g0124500;Oryzabase Gene Symbol Synonym(s)=RLK;Oryzabase Gene Name Synonym(s)=membrane-anchored receptor-like kinase;Note=Similar to Resistance protein candidate (Fragment).;Transcript_evidence=AK098961 (DDBJ%2C Best hit);ORF_evidence=B7F8F0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C alpha chain%2C conserved site (IPR000985),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Legume lectin%2C beta chain%2C Mn/Ca-binding site (IPR019825);NIAS_FLcDNA=J013068L11;Oryzabase=22539;TENOR=Os08t0124500-02
Chr08	irgsp1_rep	five_prime_UTR	1343297	1343340	.	-	.	Parent=Os08t0124500-02
Chr08	irgsp1_rep	CDS	1341936	1343296	.	-	0	Parent=Os08t0124500-02
Chr08	irgsp1_rep	CDS	1341094	1341763	.	-	1	Parent=Os08t0124500-02
Chr08	irgsp1_rep	three_prime_UTR	1340788	1341093	.	-	.	Parent=Os08t0124500-02
Chr08	irgsp1_rep	mRNA	1341152	1343265	.	+	.	ID=Os08t0124533-00;Name=Os08t0124533-00;Locus_id=Os08g0124533;Note=Hypothetical protein.;Transcript_evidence=tplb0022l18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0124533-00
Chr08	irgsp1_rep	five_prime_UTR	1341152	1341756	.	+	.	Parent=Os08t0124533-00
Chr08	irgsp1_rep	five_prime_UTR	1341924	1342964	.	+	.	Parent=Os08t0124533-00
Chr08	irgsp1_rep	CDS	1342965	1343177	.	+	0	Parent=Os08t0124533-00
Chr08	irgsp1_rep	three_prime_UTR	1343178	1343265	.	+	.	Parent=Os08t0124533-00
Chr08	irgsp1_rep	mRNA	1355690	1358006	.	+	.	ID=Os08t0124566-00;Name=Os08t0124566-00;Locus_id=Os08g0124566;Note=Hypothetical protein.;Transcript_evidence=tplb0022l18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0124566-00
Chr08	irgsp1_rep	five_prime_UTR	1355690	1356488	.	+	.	Parent=Os08t0124566-00
Chr08	irgsp1_rep	five_prime_UTR	1356588	1356986	.	+	.	Parent=Os08t0124566-00
Chr08	irgsp1_rep	CDS	1356987	1357295	.	+	0	Parent=Os08t0124566-00
Chr08	irgsp1_rep	three_prime_UTR	1357296	1358006	.	+	.	Parent=Os08t0124566-00
Chr08	irgsp1_rep	mRNA	1355707	1358101	.	-	.	ID=Os08t0124600-00;Name=Os08t0124600-00;Locus_id=Os08g0124600;Note=Similar to J065032N17%2C full insert sequence.;Transcript_evidence=AK369941 (DDBJ);ORF_evidence=B7F8F0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Legume lectin%2C beta chain%2C Mn/Ca-binding site (IPR019825),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os08t0124600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	1356618	1358101	.	-	0	Parent=Os08t0124600-00
Chr08	irgsp1_rep	CDS	1355707	1356520	.	-	1	Parent=Os08t0124600-00
Chr08	irgsp1_rep	mRNA	1369399	1370380	.	+	.	ID=Os08t0124651-00;Name=Os08t0124651-00;Locus_id=Os08g0124651;Note=Conserved hypothetical protein.;Transcript_evidence=EU974589 (DDBJ);ORF_evidence=Q6ZFR7 (UniProt);TENOR=Os08t0124651-00
Chr08	irgsp1_rep	CDS	1369399	1369608	.	+	0	Parent=Os08t0124651-00
Chr08	irgsp1_rep	CDS	1369674	1369739	.	+	0	Parent=Os08t0124651-00
Chr08	irgsp1_rep	three_prime_UTR	1369740	1369791	.	+	.	Parent=Os08t0124651-00
Chr08	irgsp1_rep	three_prime_UTR	1370269	1370380	.	+	.	Parent=Os08t0124651-00
Chr08	irgsp1_rep	mRNA	1371050	1373780	.	-	.	ID=Os08t0124700-01;Name=Os08t0124700-01;Locus_id=Os08g0124700;Note=Similar to Resistance protein candidate (Fragment).;Transcript_evidence=AK106798 (DDBJ%2C Best hit);ORF_evidence=B7F8F0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Legume lectin%2C beta chain%2C Mn/Ca-binding site (IPR019825),CytoChrome c1%2C transmembrane anchor%2C C-terminal (IPR021157);NIAS_FLcDNA=002-116-B08;Expression=AK106798;TENOR=Os08t0124700-01;KEGG=Os08t0124700-01
Chr08	irgsp1_rep	five_prime_UTR	1373566	1373780	.	-	.	Parent=Os08t0124700-01
Chr08	irgsp1_rep	CDS	1372139	1373565	.	-	0	Parent=Os08t0124700-01
Chr08	irgsp1_rep	CDS	1371929	1372040	.	-	1	Parent=Os08t0124700-01
Chr08	irgsp1_rep	three_prime_UTR	1371050	1371928	.	-	.	Parent=Os08t0124700-01
Chr08	irgsp1_rep	mRNA	1371250	1373530	.	+	.	ID=Os08t0124750-00;Name=Os08t0124750-00;Locus_id=Os08g0124750;Note=Hypothetical protein.;Transcript_evidence=tplb0022l18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0124750-00
Chr08	irgsp1_rep	five_prime_UTR	1371250	1372036	.	+	.	Parent=Os08t0124750-00
Chr08	irgsp1_rep	five_prime_UTR	1372135	1372213	.	+	.	Parent=Os08t0124750-00
Chr08	irgsp1_rep	CDS	1372214	1372780	.	+	0	Parent=Os08t0124750-00
Chr08	irgsp1_rep	three_prime_UTR	1372781	1373530	.	+	.	Parent=Os08t0124750-00
Chr08	irgsp1_rep	mRNA	1391498	1393787	.	+	.	ID=Os08t0124850-00;Name=Os08t0124850-00;Locus_id=Os08g0124850;Note=Hypothetical protein.;Transcript_evidence=tplb0022l18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0124850-00
Chr08	irgsp1_rep	five_prime_UTR	1391498	1392320	.	+	.	Parent=Os08t0124850-00
Chr08	irgsp1_rep	five_prime_UTR	1392422	1392794	.	+	.	Parent=Os08t0124850-00
Chr08	irgsp1_rep	CDS	1392795	1393112	.	+	0	Parent=Os08t0124850-00
Chr08	irgsp1_rep	three_prime_UTR	1393113	1393787	.	+	.	Parent=Os08t0124850-00
Chr08	irgsp1_rep	mRNA	1403611	1405849	.	+	.	ID=Os08t0125006-00;Name=Os08t0125006-00;Locus_id=Os08g0125006;Note=Hypothetical protein.;Transcript_evidence=tplb0022l18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0125006-00
Chr08	irgsp1_rep	five_prime_UTR	1403611	1403736	.	+	.	Parent=Os08t0125006-00
Chr08	irgsp1_rep	CDS	1403737	1403991	.	+	0	Parent=Os08t0125006-00
Chr08	irgsp1_rep	three_prime_UTR	1403992	1404229	.	+	.	Parent=Os08t0125006-00
Chr08	irgsp1_rep	three_prime_UTR	1404331	1405849	.	+	.	Parent=Os08t0125006-00
Chr08	irgsp1_rep	mRNA	1448333	1450498	.	+	.	ID=Os08t0125059-00;Name=Os08t0125059-00;Locus_id=Os08g0125059;Note=Hypothetical protein.;Transcript_evidence=tplb0022l18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0125059-00
Chr08	irgsp1_rep	five_prime_UTR	1448333	1448451	.	+	.	Parent=Os08t0125059-00
Chr08	irgsp1_rep	CDS	1448452	1448706	.	+	0	Parent=Os08t0125059-00
Chr08	irgsp1_rep	three_prime_UTR	1448707	1448957	.	+	.	Parent=Os08t0125059-00
Chr08	irgsp1_rep	three_prime_UTR	1449046	1450498	.	+	.	Parent=Os08t0125059-00
Chr08	irgsp1_rep	mRNA	1454214	1456416	.	+	.	ID=Os08t0125112-00;Name=Os08t0125112-00;Locus_id=Os08g0125112;Note=Hypothetical protein.;Transcript_evidence=tplb0022l18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0125112-00
Chr08	irgsp1_rep	five_prime_UTR	1454214	1454818	.	+	.	Parent=Os08t0125112-00
Chr08	irgsp1_rep	five_prime_UTR	1454911	1455020	.	+	.	Parent=Os08t0125112-00
Chr08	irgsp1_rep	CDS	1455021	1455500	.	+	0	Parent=Os08t0125112-00
Chr08	irgsp1_rep	three_prime_UTR	1455501	1456416	.	+	.	Parent=Os08t0125112-00
Chr08	irgsp1_rep	mRNA	1466348	1468174	.	-	.	ID=Os08t0125200-01;Name=Os08t0125200-01;Locus_id=Os08g0125200;Note=Similar to cDNA%2C clone: J065032N17%2C full insert sequence.;Transcript_evidence=AK070694 (DDBJ%2C Best hit);ORF_evidence=B7F8F0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C alpha chain%2C conserved site (IPR000985),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Legume lectin%2C beta chain%2C Mn/Ca-binding site (IPR019825),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023056G17;TENOR=Os08t0125200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	1468173	1468174	.	-	.	Parent=Os08t0125200-01
Chr08	irgsp1_rep	CDS	1467202	1468172	.	-	0	Parent=Os08t0125200-01
Chr08	irgsp1_rep	CDS	1466416	1467085	.	-	1	Parent=Os08t0125200-01
Chr08	irgsp1_rep	three_prime_UTR	1466348	1466415	.	-	.	Parent=Os08t0125200-01
Chr08	irgsp1_rep	mRNA	1466472	1473694	.	+	.	ID=Os08t0125250-00;Name=Os08t0125250-00;Locus_id=Os08g0125250;Note=Hypothetical protein.;Transcript_evidence=tplb0022l18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0125250-00
Chr08	irgsp1_rep	five_prime_UTR	1466472	1467078	.	+	.	Parent=Os08t0125250-00
Chr08	irgsp1_rep	five_prime_UTR	1467190	1467233	.	+	.	Parent=Os08t0125250-00
Chr08	irgsp1_rep	CDS	1467234	1467794	.	+	0	Parent=Os08t0125250-00
Chr08	irgsp1_rep	three_prime_UTR	1467795	1468191	.	+	.	Parent=Os08t0125250-00
Chr08	irgsp1_rep	three_prime_UTR	1473365	1473694	.	+	.	Parent=Os08t0125250-00
Chr08	irgsp1_rep	mRNA	1468423	1473225	.	+	.	ID=Os08t0125300-01;Name=Os08t0125300-01;Locus_id=Os08g0125300;Note=Integrase%2C catalytic core domain containing protein.;Transcript_evidence=AK071597 (DDBJ%2C Best hit);ORF_evidence=B8BDZ6 (UniProt);GO=Biological Process: DNA integration (GO:0015074),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Integrase%2C catalytic core (IPR001584),Zinc finger%2C CCHC-type (IPR001878),Ribonuclease H-like (IPR012337),Zinc finger%2C CCHC retroviral-type (IPR013084),Reverse transcriptase%2C RNA-dependent DNA polymerase (IPR013103);NIAS_FLcDNA=J023104P21;Expression=AK071597;TENOR=Os08t0125300-01;KEGG=Os08t0125300-01
Chr08	irgsp1_rep	five_prime_UTR	1468423	1468652	.	+	.	Parent=Os08t0125300-01
Chr08	irgsp1_rep	CDS	1468653	1472936	.	+	0	Parent=Os08t0125300-01
Chr08	irgsp1_rep	three_prime_UTR	1472937	1473225	.	+	.	Parent=Os08t0125300-01
Chr08	irgsp1_rep	mRNA	1477654	1484914	.	+	.	ID=Os08t0125450-00;Name=Os08t0125450-00;Locus_id=Os08g0125450;Note=Hypothetical protein.;Transcript_evidence=tplb0022l18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0125450-00
Chr08	irgsp1_rep	five_prime_UTR	1477654	1478479	.	+	.	Parent=Os08t0125450-00
Chr08	irgsp1_rep	five_prime_UTR	1478576	1478942	.	+	.	Parent=Os08t0125450-00
Chr08	irgsp1_rep	CDS	1478943	1479293	.	+	0	Parent=Os08t0125450-00
Chr08	irgsp1_rep	three_prime_UTR	1479294	1479396	.	+	.	Parent=Os08t0125450-00
Chr08	irgsp1_rep	three_prime_UTR	1484373	1484914	.	+	.	Parent=Os08t0125450-00
Chr08	irgsp1_rep	mRNA	1501915	1503143	.	+	.	ID=Os08t0125700-00;Name=Os08t0125700-00;Locus_id=Os08g0125700;Note=Conserved hypothetical protein.;Transcript_evidence=EU974589 (DDBJ);ORF_evidence=Q6ZFR7 (UniProt);TENOR=Os08t0125700-00
Chr08	irgsp1_rep	CDS	1501915	1502115	.	+	0	Parent=Os08t0125700-00
Chr08	irgsp1_rep	CDS	1502183	1502209	.	+	0	Parent=Os08t0125700-00
Chr08	irgsp1_rep	three_prime_UTR	1502210	1502311	.	+	.	Parent=Os08t0125700-00
Chr08	irgsp1_rep	three_prime_UTR	1503035	1503143	.	+	.	Parent=Os08t0125700-00
Chr08	irgsp1_rep	mRNA	1503897	1506337	.	-	.	ID=Os08t0125800-01;Name=Os08t0125800-01;Locus_id=Os08g0125800;Note=Hypothetical conserved gene.;Transcript_evidence=AK240899 (DDBJ%2C Best hit);ORF_evidence=A2YQT3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C alpha chain%2C conserved site (IPR000985),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Legume lectin%2C beta chain%2C Mn/Ca-binding site (IPR019825);NIAS_FLcDNA=J065032N17;TENOR=Os08t0125800-01;KEGG=Os08t0125800-01
Chr08	irgsp1_rep	five_prime_UTR	1506318	1506337	.	-	.	Parent=Os08t0125800-01
Chr08	irgsp1_rep	CDS	1504891	1506317	.	-	0	Parent=Os08t0125800-01
Chr08	irgsp1_rep	CDS	1504045	1504804	.	-	1	Parent=Os08t0125800-01
Chr08	irgsp1_rep	three_prime_UTR	1503897	1504044	.	-	.	Parent=Os08t0125800-01
Chr08	irgsp1_rep	mRNA	1503964	1506282	.	+	.	ID=Os08t0125850-00;Name=Os08t0125850-00;Locus_id=Os08g0125850;Note=Hypothetical protein.;Transcript_evidence=tplb0022l18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0125850-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	1503964	1504806	.	+	.	Parent=Os08t0125850-00
Chr08	irgsp1_rep	five_prime_UTR	1504883	1505103	.	+	.	Parent=Os08t0125850-00
Chr08	irgsp1_rep	CDS	1505104	1505532	.	+	0	Parent=Os08t0125850-00
Chr08	irgsp1_rep	three_prime_UTR	1505533	1506282	.	+	.	Parent=Os08t0125850-00
Chr08	irgsp1_rep	mRNA	1510719	1512998	.	+	.	ID=Os08t0126000-00;Name=Os08t0126000-00;Locus_id=Os08g0126000;Note=Hypothetical conserved gene.;Transcript_evidence=tplb0060i18 (Wheat FLcDNA);ORF_evidence=Q6ZFR4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=von Willebrand factor%2C type A (IPR002035);TENOR=Os08t0126000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	1510719	1512992	.	+	0	Parent=Os08t0126000-00
Chr08	irgsp1_rep	three_prime_UTR	1512993	1512998	.	+	.	Parent=Os08t0126000-00
Chr08	irgsp1_rep	mRNA	1515445	1517559	.	-	.	ID=Os08t0126100-00;Name=Os08t0126100-00;Locus_id=Os08g0126100;Note=Hypothetical conserved gene.;Transcript_evidence=EU968081 (DDBJ);ORF_evidence=Q6ZFR3 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),von Willebrand factor%2C type A (IPR002035),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);TENOR=Os08t0126100-00;KEGG=Os08t0126100-00
Chr08	irgsp1_rep	CDS	1515445	1517559	.	-	0	Parent=Os08t0126100-00
Chr08	irgsp1_rep	mRNA	1525411	1529192	.	+	.	ID=Os08t0126300-01;Name=Os08t0126300-01;Locus_id=Os08g0126300;CGSNL Gene Symbol=GAPC;CGSNL Gene Name=GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE%2C CYTOSOLIC;Oryzabase Gene Symbol Synonym(s)=OsGapC3%2C OGapC3%2C OsGAPDH1%2C GAPDH1;Oryzabase Gene Name Synonym(s)=glyceraldehydes-3-phosphate dehydrogenase%2C cytosolic GAPDH3%2C cytosolic glyceraldehyde-3-phosphate dehydrogenase 3;Note=Similar to Glyceraldehyde-3-phosphate dehydrogenase (Fragment).;Transcript_evidence=AK071097 (DDBJ%2C Best hit);ORF_evidence=Q0J8A4 (UniProt);GO=Biological Process: glucose metabolic process (GO:0006006),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620),Molecular Function: NADP binding (GO:0050661),Molecular Function: NAD binding (GO:0051287);InterPro=Glyceraldehyde-3-phosphate dehydrogenase%2C type I (IPR006424),NAD(P)-binding domain (IPR016040),Glyceraldehyde 3-phosphate dehydrogenase%2C NAD(P) binding domain (IPR020828),Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain (IPR020829),Glyceraldehyde 3-phosphate dehydrogenase%2C active site (IPR020830),Glyceraldehyde/Erythrose phosphate dehydrogenase family (IPR020831);NIAS_FLcDNA=J023080G06;Oryzabase=8991;Expression=AK071097;TENOR=Os08t0126300-01;KEGG=Os08t0126300-01 (EC:1.2.1.12)
Chr08	irgsp1_rep	five_prime_UTR	1525411	1525485	.	+	.	Parent=Os08t0126300-01
Chr08	irgsp1_rep	CDS	1525486	1525489	.	+	0	Parent=Os08t0126300-01
Chr08	irgsp1_rep	CDS	1525623	1525646	.	+	2	Parent=Os08t0126300-01
Chr08	irgsp1_rep	CDS	1525762	1525862	.	+	2	Parent=Os08t0126300-01
Chr08	irgsp1_rep	CDS	1526150	1526265	.	+	0	Parent=Os08t0126300-01
Chr08	irgsp1_rep	CDS	1526358	1526457	.	+	1	Parent=Os08t0126300-01
Chr08	irgsp1_rep	CDS	1527058	1527204	.	+	0	Parent=Os08t0126300-01
Chr08	irgsp1_rep	CDS	1527288	1527348	.	+	0	Parent=Os08t0126300-01
Chr08	irgsp1_rep	CDS	1527431	1527528	.	+	2	Parent=Os08t0126300-01
Chr08	irgsp1_rep	CDS	1527953	1528095	.	+	0	Parent=Os08t0126300-01
Chr08	irgsp1_rep	CDS	1528325	1528408	.	+	1	Parent=Os08t0126300-01
Chr08	irgsp1_rep	CDS	1528536	1528625	.	+	1	Parent=Os08t0126300-01
Chr08	irgsp1_rep	CDS	1528720	1528765	.	+	1	Parent=Os08t0126300-01
Chr08	irgsp1_rep	three_prime_UTR	1528766	1529192	.	+	.	Parent=Os08t0126300-01
Chr08	irgsp1_rep	mRNA	1525445	1529063	.	+	.	ID=Os08t0126300-02;Name=Os08t0126300-02;Locus_id=Os08g0126300;CGSNL Gene Symbol=GAPC;CGSNL Gene Name=GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE%2C CYTOSOLIC;Oryzabase Gene Symbol Synonym(s)=OsGapC3%2C OGapC3%2C OsGAPDH1%2C GAPDH1;Oryzabase Gene Name Synonym(s)=glyceraldehydes-3-phosphate dehydrogenase%2C cytosolic GAPDH3%2C cytosolic glyceraldehyde-3-phosphate dehydrogenase 3;Note=Similar to Glyceraldehyde-3-phosphate dehydrogenase (Fragment).;Transcript_evidence=AK103777 (DDBJ%2C Best hit);ORF_evidence=Q0J8A4 (UniProt);GO=Biological Process: glucose metabolic process (GO:0006006),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620),Molecular Function: NADP binding (GO:0050661),Molecular Function: NAD binding (GO:0051287);InterPro=Glyceraldehyde-3-phosphate dehydrogenase%2C type I (IPR006424),NAD(P)-binding domain (IPR016040),Glyceraldehyde 3-phosphate dehydrogenase%2C NAD(P) binding domain (IPR020828),Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain (IPR020829),Glyceraldehyde 3-phosphate dehydrogenase%2C active site (IPR020830),Glyceraldehyde/Erythrose phosphate dehydrogenase family (IPR020831);NIAS_FLcDNA=J033144F10;Oryzabase=8991;Expression=AK103777;TENOR=Os08t0126300-02;KEGG=Os08t0126300-02 (EC:1.2.1.12)
Chr08	irgsp1_rep	five_prime_UTR	1525445	1525485	.	+	.	Parent=Os08t0126300-02
Chr08	irgsp1_rep	CDS	1525486	1525489	.	+	0	Parent=Os08t0126300-02
Chr08	irgsp1_rep	CDS	1525623	1525646	.	+	2	Parent=Os08t0126300-02
Chr08	irgsp1_rep	CDS	1525762	1525862	.	+	2	Parent=Os08t0126300-02
Chr08	irgsp1_rep	CDS	1526150	1526265	.	+	0	Parent=Os08t0126300-02
Chr08	irgsp1_rep	CDS	1526358	1526457	.	+	1	Parent=Os08t0126300-02
Chr08	irgsp1_rep	CDS	1527058	1527204	.	+	0	Parent=Os08t0126300-02
Chr08	irgsp1_rep	CDS	1527288	1527348	.	+	0	Parent=Os08t0126300-02
Chr08	irgsp1_rep	CDS	1527431	1527528	.	+	2	Parent=Os08t0126300-02
Chr08	irgsp1_rep	CDS	1527953	1528095	.	+	0	Parent=Os08t0126300-02
Chr08	irgsp1_rep	CDS	1528325	1528408	.	+	1	Parent=Os08t0126300-02
Chr08	irgsp1_rep	CDS	1528536	1528625	.	+	1	Parent=Os08t0126300-02
Chr08	irgsp1_rep	CDS	1528720	1528765	.	+	1	Parent=Os08t0126300-02
Chr08	irgsp1_rep	three_prime_UTR	1528766	1529063	.	+	.	Parent=Os08t0126300-02
Chr08	irgsp1_rep	mRNA	1528325	1528985	.	+	.	ID=Os08t0126300-03;Name=Os08t0126300-03;Locus_id=Os08g0126300;CGSNL Gene Symbol=GAPC;CGSNL Gene Name=GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE%2C CYTOSOLIC;Oryzabase Gene Symbol Synonym(s)=OsGapC3%2C OGapC3%2C OsGAPDH1%2C GAPDH1;Oryzabase Gene Name Synonym(s)=glyceraldehydes-3-phosphate dehydrogenase%2C cytosolic GAPDH3%2C cytosolic glyceraldehyde-3-phosphate dehydrogenase 3;Note=Similar to cDNA clone:J023080G06%2C full insert sequence.;Transcript_evidence=AK105038 (DDBJ%2C Best hit);ORF_evidence=B7EIW3 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620);InterPro=Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain (IPR020829),Glyceraldehyde/Erythrose phosphate dehydrogenase family (IPR020831);NIAS_FLcDNA=001-036-C12;Oryzabase=8991;Expression=AK105038;TENOR=Os08t0126300-03;KEGG=Os08t0126300-03 (EC:1.2.1.12)
Chr08	irgsp1_rep	five_prime_UTR	1528325	1528325	.	+	.	Parent=Os08t0126300-03
Chr08	irgsp1_rep	CDS	1528326	1528408	.	+	0	Parent=Os08t0126300-03
Chr08	irgsp1_rep	CDS	1528536	1528625	.	+	1	Parent=Os08t0126300-03
Chr08	irgsp1_rep	CDS	1528720	1528765	.	+	1	Parent=Os08t0126300-03
Chr08	irgsp1_rep	three_prime_UTR	1528766	1528985	.	+	.	Parent=Os08t0126300-03
Chr08	irgsp1_rep	mRNA	1526354	1528625	.	-	.	ID=Os08t0126350-00;Name=Os08t0126350-00;Locus_id=Os08g0126350;Note=Hypothetical protein.;Transcript_evidence=BT016463 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0126350-00
Chr08	irgsp1_rep	five_prime_UTR	1528521	1528625	.	-	.	Parent=Os08t0126350-00
Chr08	irgsp1_rep	five_prime_UTR	1527938	1528163	.	-	.	Parent=Os08t0126350-00
Chr08	irgsp1_rep	five_prime_UTR	1527504	1527514	.	-	.	Parent=Os08t0126350-00
Chr08	irgsp1_rep	CDS	1527421	1527503	.	-	0	Parent=Os08t0126350-00
Chr08	irgsp1_rep	CDS	1527300	1527345	.	-	1	Parent=Os08t0126350-00
Chr08	irgsp1_rep	CDS	1527056	1527212	.	-	0	Parent=Os08t0126350-00
Chr08	irgsp1_rep	CDS	1526354	1526450	.	-	2	Parent=Os08t0126350-00
Chr08	irgsp1_rep	mRNA	1531999	1533434	.	-	.	ID=Os08t0126500-01;Name=Os08t0126500-01;Locus_id=Os08g0126500;Oryzabase Gene Symbol Synonym(s)=OsFbox404%2C Os_F0566;Oryzabase Gene Name Synonym(s)=F-box protein 404;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK110941 (DDBJ%2C Best hit);ORF_evidence=A2YQT9 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174);NIAS_FLcDNA=002-173-G11;Oryzabase=17177;Expression=AK110941;TENOR=Os08t0126500-01;KEGG=Os08t0126500-01
Chr08	irgsp1_rep	five_prime_UTR	1533411	1533434	.	-	.	Parent=Os08t0126500-01
Chr08	irgsp1_rep	CDS	1532256	1533410	.	-	0	Parent=Os08t0126500-01
Chr08	irgsp1_rep	three_prime_UTR	1531999	1532255	.	-	.	Parent=Os08t0126500-01
Chr08	irgsp1_rep	mRNA	1536864	1540377	.	+	.	ID=Os08t0126700-01;Name=Os08t0126700-01;Locus_id=Os08g0126700;CGSNL Gene Symbol=C3H54;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 54;Oryzabase Gene Symbol Synonym(s)=OsC3H54;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 54;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK111902 (DDBJ%2C Best hit);ORF_evidence=B7F483 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA recognition motif domain (IPR000504),Zinc finger%2C CCCH-type (IPR000571),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023082B02;Oryzabase=8620;Expression=AK111902;TENOR=Os08t0126700-01;KEGG=Os08t0126700-01
Chr08	irgsp1_rep	five_prime_UTR	1536864	1536967	.	+	.	Parent=Os08t0126700-01
Chr08	irgsp1_rep	CDS	1536968	1537971	.	+	0	Parent=Os08t0126700-01
Chr08	irgsp1_rep	CDS	1538068	1538247	.	+	1	Parent=Os08t0126700-01
Chr08	irgsp1_rep	CDS	1538343	1538522	.	+	1	Parent=Os08t0126700-01
Chr08	irgsp1_rep	CDS	1538708	1538787	.	+	1	Parent=Os08t0126700-01
Chr08	irgsp1_rep	CDS	1538873	1539046	.	+	2	Parent=Os08t0126700-01
Chr08	irgsp1_rep	CDS	1539346	1539463	.	+	2	Parent=Os08t0126700-01
Chr08	irgsp1_rep	CDS	1539568	1539646	.	+	1	Parent=Os08t0126700-01
Chr08	irgsp1_rep	three_prime_UTR	1539647	1540377	.	+	.	Parent=Os08t0126700-01
Chr08	irgsp1_rep	mRNA	1536955	1540289	.	+	.	ID=Os08t0126700-02;Name=Os08t0126700-02;Locus_id=Os08g0126700;CGSNL Gene Symbol=C3H54;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 54;Oryzabase Gene Symbol Synonym(s)=OsC3H54;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 54;Note=RNA recognition motif domain domain containing protein.;Transcript_evidence=AK111805 (DDBJ%2C Best hit);ORF_evidence=Q6ZK57 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA recognition motif domain (IPR000504),Zinc finger%2C CCCH-type (IPR000571),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013094C18;Oryzabase=8620;TENOR=Os08t0126700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	1536955	1536955	.	+	.	Parent=Os08t0126700-02
Chr08	irgsp1_rep	CDS	1536956	1537971	.	+	0	Parent=Os08t0126700-02
Chr08	irgsp1_rep	CDS	1538068	1538247	.	+	1	Parent=Os08t0126700-02
Chr08	irgsp1_rep	CDS	1538343	1538522	.	+	1	Parent=Os08t0126700-02
Chr08	irgsp1_rep	CDS	1538708	1538787	.	+	1	Parent=Os08t0126700-02
Chr08	irgsp1_rep	CDS	1538873	1539046	.	+	2	Parent=Os08t0126700-02
Chr08	irgsp1_rep	CDS	1539346	1539463	.	+	2	Parent=Os08t0126700-02
Chr08	irgsp1_rep	CDS	1539568	1539646	.	+	1	Parent=Os08t0126700-02
Chr08	irgsp1_rep	three_prime_UTR	1539647	1540289	.	+	.	Parent=Os08t0126700-02
Chr08	irgsp1_rep	mRNA	1561754	1566894	.	+	.	ID=Os08t0127100-01;Name=Os08t0127100-01;Locus_id=Os08g0127100;RAP-DB Gene Symbol Synonym(s)=OsLHT1;RAP-DB Gene Name Synonym(s)=Lysine/Histidine transporter 1;Oryzabase Gene Symbol Synonym(s)=OsHT%2C OsLHT1%2C LHT1;Oryzabase Gene Name Synonym(s)=Histidine Transporter%2C lysine and histidine transporter 1%2C lysine-histidine-like transporter 1%2C Lysine/Histidine transporter 1;Note=Amino acid transporter;Transcript_evidence=AK102015;ORF_evidence=Q6ZK52;InterPro=Amino acid transporter%2C transmembrane domain (IPR013057);NIAS_FLcDNA=J033080E11;Manual Curation=August 6%2C 2019;Literature_PMID=31221084;Oryzabase=13673;Expression=AK102015;TENOR=Os08t0127100-01;KEGG=Os08t0127100-01;Subcellular location=plasma membrane (GO:0005886)
Chr08	irgsp1_rep	five_prime_UTR	1561754	1561928	.	+	.	Parent=Os08t0127100-01
Chr08	irgsp1_rep	CDS	1561929	1561967	.	+	0	Parent=Os08t0127100-01
Chr08	irgsp1_rep	CDS	1564946	1565100	.	+	0	Parent=Os08t0127100-01
Chr08	irgsp1_rep	CDS	1565193	1566082	.	+	1	Parent=Os08t0127100-01
Chr08	irgsp1_rep	CDS	1566173	1566264	.	+	2	Parent=Os08t0127100-01
Chr08	irgsp1_rep	CDS	1566363	1566431	.	+	0	Parent=Os08t0127100-01
Chr08	irgsp1_rep	CDS	1566563	1566661	.	+	0	Parent=Os08t0127100-01
Chr08	irgsp1_rep	three_prime_UTR	1566662	1566894	.	+	.	Parent=Os08t0127100-01
Chr08	irgsp1_rep	mRNA	1561827	1566957	.	+	.	ID=Os08t0127100-02;Name=Os08t0127100-02;Locus_id=Os08g0127100;Oryzabase Gene Symbol Synonym(s)=OsHT%2C OsLHT1%2C LHT1;Oryzabase Gene Name Synonym(s)=Histidine Transporter%2C lysine and histidine transporter 1%2C lysine-histidine-like transporter 1%2C Lysine/Histidine transporter 1;Note=Amino acid transporter%2C transmembrane family protein.;Transcript_evidence=AK065217 (DDBJ%2C Best hit);ORF_evidence=Q85V22 (UniProt);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=J013002G10;Oryzabase=13673;Expression=AK065217;TENOR=Os08t0127100-02;KEGG=Os08t0127100-02
Chr08	irgsp1_rep	five_prime_UTR	1561827	1561928	.	+	.	Parent=Os08t0127100-02
Chr08	irgsp1_rep	CDS	1561929	1561967	.	+	0	Parent=Os08t0127100-02
Chr08	irgsp1_rep	CDS	1564946	1565100	.	+	0	Parent=Os08t0127100-02
Chr08	irgsp1_rep	CDS	1565193	1566082	.	+	1	Parent=Os08t0127100-02
Chr08	irgsp1_rep	CDS	1566173	1566264	.	+	2	Parent=Os08t0127100-02
Chr08	irgsp1_rep	CDS	1566363	1566431	.	+	0	Parent=Os08t0127100-02
Chr08	irgsp1_rep	CDS	1566563	1566661	.	+	0	Parent=Os08t0127100-02
Chr08	irgsp1_rep	three_prime_UTR	1566662	1566957	.	+	.	Parent=Os08t0127100-02
Chr08	irgsp1_rep	mRNA	1567554	1568166	.	-	.	ID=Os08t0127300-01;Name=Os08t0127300-01;Locus_id=Os08g0127300;Note=Conserved hypothetical protein.;Transcript_evidence=AK058548 (DDBJ%2C Best hit);ORF_evidence=Q6ZK51 (UniProt);NIAS_FLcDNA=001-017-C06;Expression=AK058548;TENOR=Os08t0127300-01;KEGG=Os08t0127300-01
Chr08	irgsp1_rep	five_prime_UTR	1568166	1568166	.	-	.	Parent=Os08t0127300-01
Chr08	irgsp1_rep	CDS	1568040	1568165	.	-	0	Parent=Os08t0127300-01
Chr08	irgsp1_rep	three_prime_UTR	1567554	1568039	.	-	.	Parent=Os08t0127300-01
Chr08	irgsp1_rep	mRNA	1578268	1580227	.	+	.	ID=Os08t0127500-01;Name=Os08t0127500-01;Locus_id=Os08g0127500;Note=Acid phosphatase/vanadium-dependent haloperoxidase related family protein.;Transcript_evidence=AK071322 (DDBJ%2C Best hit);ORF_evidence=NP_001150731.1 (RefSeq);InterPro=Acid phosphatase/vanadium-dependent haloperoxidase-related (IPR003832);NIAS_FLcDNA=J023087N16;Expression=AK071322;TENOR=Os08t0127500-01;KEGG=Os08t0127500-01
Chr08	irgsp1_rep	five_prime_UTR	1578268	1578358	.	+	.	Parent=Os08t0127500-01
Chr08	irgsp1_rep	CDS	1578359	1578525	.	+	0	Parent=Os08t0127500-01
Chr08	irgsp1_rep	CDS	1578611	1578767	.	+	1	Parent=Os08t0127500-01
Chr08	irgsp1_rep	CDS	1579392	1579442	.	+	0	Parent=Os08t0127500-01
Chr08	irgsp1_rep	CDS	1579716	1579808	.	+	0	Parent=Os08t0127500-01
Chr08	irgsp1_rep	CDS	1579940	1580026	.	+	0	Parent=Os08t0127500-01
Chr08	irgsp1_rep	three_prime_UTR	1580027	1580227	.	+	.	Parent=Os08t0127500-01
Chr08	irgsp1_rep	mRNA	1580956	1584949	.	-	.	ID=Os08t0127600-01;Name=Os08t0127600-01;Locus_id=Os08g0127600;Note=Heat shock protein DnaJ%2C N-terminal domain containing protein.;Transcript_evidence=AK058365 (DDBJ%2C Best hit),AK068373 (DDBJ%2C Best hit);ORF_evidence=XP_002892466.1 (RefSeq);GO=Molecular Function: heat shock protein binding (GO:0031072);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Protein of unknown function DUF3353 (IPR021788);NIAS_FLcDNA=001-014-F11,J013149L10;Expression=AK058365;TENOR=Os08t0127600-01;KEGG=Os08t0127600-01
Chr08	irgsp1_rep	five_prime_UTR	1584902	1584949	.	-	.	Parent=Os08t0127600-01
Chr08	irgsp1_rep	CDS	1584780	1584901	.	-	0	Parent=Os08t0127600-01
Chr08	irgsp1_rep	CDS	1584587	1584692	.	-	1	Parent=Os08t0127600-01
Chr08	irgsp1_rep	CDS	1584396	1584500	.	-	0	Parent=Os08t0127600-01
Chr08	irgsp1_rep	CDS	1584226	1584303	.	-	0	Parent=Os08t0127600-01
Chr08	irgsp1_rep	CDS	1583709	1583764	.	-	0	Parent=Os08t0127600-01
Chr08	irgsp1_rep	CDS	1582972	1583029	.	-	1	Parent=Os08t0127600-01
Chr08	irgsp1_rep	CDS	1582201	1582326	.	-	0	Parent=Os08t0127600-01
Chr08	irgsp1_rep	CDS	1581716	1581811	.	-	0	Parent=Os08t0127600-01
Chr08	irgsp1_rep	CDS	1581537	1581608	.	-	0	Parent=Os08t0127600-01
Chr08	irgsp1_rep	CDS	1581345	1581407	.	-	0	Parent=Os08t0127600-01
Chr08	irgsp1_rep	three_prime_UTR	1580956	1581344	.	-	.	Parent=Os08t0127600-01
Chr08	irgsp1_rep	mRNA	1585137	1588890	.	+	.	ID=Os08t0127700-01;Name=Os08t0127700-01;Locus_id=Os08g0127700;Note=Similar to Pre-mRNA-splicing factor SLU7.;Transcript_evidence=AK059350 (DDBJ%2C Best hit),AK121348 (DDBJ%2C Best hit);ORF_evidence=A2YQU8 (UniProt);InterPro=Pre-mRNA splicing Prp18-interacting factor (IPR021715);NIAS_FLcDNA=001-026-C09,J023121K11;Expression=AK059350;TENOR=Os08t0127700-01;KEGG=Os08t0127700-01
Chr08	irgsp1_rep	five_prime_UTR	1585137	1585279	.	+	.	Parent=Os08t0127700-01
Chr08	irgsp1_rep	CDS	1585280	1585295	.	+	0	Parent=Os08t0127700-01
Chr08	irgsp1_rep	CDS	1585572	1585735	.	+	2	Parent=Os08t0127700-01
Chr08	irgsp1_rep	CDS	1585838	1585950	.	+	0	Parent=Os08t0127700-01
Chr08	irgsp1_rep	CDS	1586195	1586744	.	+	1	Parent=Os08t0127700-01
Chr08	irgsp1_rep	CDS	1586859	1587158	.	+	0	Parent=Os08t0127700-01
Chr08	irgsp1_rep	CDS	1587735	1587951	.	+	0	Parent=Os08t0127700-01
Chr08	irgsp1_rep	CDS	1588328	1588431	.	+	2	Parent=Os08t0127700-01
Chr08	irgsp1_rep	CDS	1588522	1588668	.	+	0	Parent=Os08t0127700-01
Chr08	irgsp1_rep	three_prime_UTR	1588669	1588890	.	+	.	Parent=Os08t0127700-01
Chr08	irgsp1_rep	mRNA	1585191	1588896	.	+	.	ID=Os08t0127700-02;Name=Os08t0127700-02;Locus_id=Os08g0127700;Note=Similar to Pre-mRNA-splicing factor SLU7.;Transcript_evidence=AK099242 (DDBJ%2C Best hit);ORF_evidence=A2YQU8 (UniProt);InterPro=Pre-mRNA splicing Prp18-interacting factor (IPR021715);NIAS_FLcDNA=J013116B18;Expression=AK099242;TENOR=Os08t0127700-02;KEGG=Os08t0127700-02
Chr08	irgsp1_rep	five_prime_UTR	1585191	1585279	.	+	.	Parent=Os08t0127700-02
Chr08	irgsp1_rep	CDS	1585280	1585295	.	+	0	Parent=Os08t0127700-02
Chr08	irgsp1_rep	CDS	1585572	1585735	.	+	2	Parent=Os08t0127700-02
Chr08	irgsp1_rep	CDS	1585838	1585950	.	+	0	Parent=Os08t0127700-02
Chr08	irgsp1_rep	CDS	1586195	1586744	.	+	1	Parent=Os08t0127700-02
Chr08	irgsp1_rep	CDS	1586859	1587158	.	+	0	Parent=Os08t0127700-02
Chr08	irgsp1_rep	CDS	1587735	1587951	.	+	0	Parent=Os08t0127700-02
Chr08	irgsp1_rep	CDS	1588328	1588431	.	+	2	Parent=Os08t0127700-02
Chr08	irgsp1_rep	CDS	1588522	1588668	.	+	0	Parent=Os08t0127700-02
Chr08	irgsp1_rep	three_prime_UTR	1588669	1588896	.	+	.	Parent=Os08t0127700-02
Chr08	irgsp1_rep	mRNA	1587304	1588227	.	-	.	ID=Os08t0127750-01;Name=Os08t0127750-01;Locus_id=Os08g0127750;Note=Non-protein coding transcript.;Transcript_evidence=AK242810 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090061A12;TENOR=Os08t0127750-01
Chr08	irgsp1_rep	exon	1587304	1588227	.	-	.	Parent=Os08t0127750-01
Chr08	irgsp1_rep	mRNA	1589206	1590207	.	-	.	ID=Os08t0127800-02;Name=Os08t0127800-02;Locus_id=Os08g0127800;Note=Conserved hypothetical protein.;Transcript_evidence=AK103321 (DDBJ%2C Best hit),AK108548 (DDBJ%2C Best hit);ORF_evidence=Q6ZK47 (UniProt);NIAS_FLcDNA=J033125J05,002-144-E01;Expression=AK103321;TENOR=Os08t0127800-02;KEGG=Os08t0127800-02
Chr08	irgsp1_rep	five_prime_UTR	1590163	1590207	.	-	.	Parent=Os08t0127800-02
Chr08	irgsp1_rep	CDS	1589389	1590162	.	-	0	Parent=Os08t0127800-02
Chr08	irgsp1_rep	three_prime_UTR	1589206	1589388	.	-	.	Parent=Os08t0127800-02
Chr08	irgsp1_rep	mRNA	1597239	1599498	.	+	.	ID=Os08t0127900-01;Name=Os08t0127900-01;Locus_id=Os08g0127900;Oryzabase Gene Symbol Synonym(s)=OsEnS-115;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 115;Note=Similar to Globulin 1 (Fragment).;Transcript_evidence=AK105316 (DDBJ%2C Best hit),AK119657 (DDBJ%2C Best hit);ORF_evidence=A3BP99 (UniProt);GO=Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=11-S seed storage protein%2C plant (IPR006044),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710);NIAS_FLcDNA=001-117-E07,002-130-H05;Oryzabase=18413;Expression=AK105316;TENOR=Os08t0127900-01;KEGG=Os08t0127900-01
Chr08	irgsp1_rep	five_prime_UTR	1597239	1597277	.	+	.	Parent=Os08t0127900-01
Chr08	irgsp1_rep	CDS	1597278	1597952	.	+	0	Parent=Os08t0127900-01
Chr08	irgsp1_rep	CDS	1598039	1598521	.	+	0	Parent=Os08t0127900-01
Chr08	irgsp1_rep	CDS	1598900	1599337	.	+	0	Parent=Os08t0127900-01
Chr08	irgsp1_rep	three_prime_UTR	1599338	1599498	.	+	.	Parent=Os08t0127900-01
Chr08	irgsp1_rep	mRNA	1598160	1599259	.	-	.	ID=Os08t0127950-00;Name=Os08t0127950-00;Locus_id=Os08g0127950;Note=Hypothetical protein.;Transcript_evidence=BT024064 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0127950-00
Chr08	irgsp1_rep	five_prime_UTR	1599253	1599259	.	-	.	Parent=Os08t0127950-00
Chr08	irgsp1_rep	CDS	1598861	1599252	.	-	0	Parent=Os08t0127950-00
Chr08	irgsp1_rep	CDS	1598422	1598482	.	-	1	Parent=Os08t0127950-00
Chr08	irgsp1_rep	three_prime_UTR	1598160	1598421	.	-	.	Parent=Os08t0127950-00
Chr08	irgsp1_rep	mRNA	1600851	1604896	.	+	.	ID=Os08t0128000-01;Name=Os08t0128000-01;Locus_id=Os08g0128000;Oryzabase Gene Name Synonym(s)=galactose oxidase/HUP6-like gene;Note=Galactose oxidase/kelch%2C beta-propeller domain containing protein.;Transcript_evidence=AK103896 (DDBJ%2C Best hit);ORF_evidence=NP_001152676.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Kelch repeat type 1 (IPR006652),Kelch-type beta propeller (IPR015915);NIAS_FLcDNA=J033150H12;Oryzabase=23029;Expression=AK103896;TENOR=Os08t0128000-01;KEGG=Os08t0128000-01
Chr08	irgsp1_rep	five_prime_UTR	1600851	1600874	.	+	.	Parent=Os08t0128000-01
Chr08	irgsp1_rep	CDS	1600875	1601027	.	+	0	Parent=Os08t0128000-01
Chr08	irgsp1_rep	CDS	1601100	1601300	.	+	0	Parent=Os08t0128000-01
Chr08	irgsp1_rep	CDS	1601396	1601625	.	+	0	Parent=Os08t0128000-01
Chr08	irgsp1_rep	CDS	1601941	1602111	.	+	1	Parent=Os08t0128000-01
Chr08	irgsp1_rep	CDS	1602247	1602352	.	+	1	Parent=Os08t0128000-01
Chr08	irgsp1_rep	CDS	1602684	1602890	.	+	0	Parent=Os08t0128000-01
Chr08	irgsp1_rep	CDS	1602983	1603147	.	+	0	Parent=Os08t0128000-01
Chr08	irgsp1_rep	three_prime_UTR	1603148	1603184	.	+	.	Parent=Os08t0128000-01
Chr08	irgsp1_rep	three_prime_UTR	1604348	1604896	.	+	.	Parent=Os08t0128000-01
Chr08	irgsp1_rep	mRNA	1600853	1603380	.	+	.	ID=Os08t0128000-02;Name=Os08t0128000-02;Locus_id=Os08g0128000;Oryzabase Gene Name Synonym(s)=galactose oxidase/HUP6-like gene;Note=Galactose oxidase/kelch%2C beta-propeller domain containing protein.;Transcript_evidence=AK069322 (DDBJ%2C Best hit);ORF_evidence=NP_001152676.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Kelch repeat type 1 (IPR006652),Kelch-type beta propeller (IPR015915);NIAS_FLcDNA=J023013D19;Oryzabase=23029;Expression=AK069322;TENOR=Os08t0128000-02;KEGG=Os08t0128000-02
Chr08	irgsp1_rep	five_prime_UTR	1600853	1600874	.	+	.	Parent=Os08t0128000-02
Chr08	irgsp1_rep	CDS	1600875	1601027	.	+	0	Parent=Os08t0128000-02
Chr08	irgsp1_rep	CDS	1601100	1601300	.	+	0	Parent=Os08t0128000-02
Chr08	irgsp1_rep	CDS	1601396	1601625	.	+	0	Parent=Os08t0128000-02
Chr08	irgsp1_rep	CDS	1601941	1602111	.	+	1	Parent=Os08t0128000-02
Chr08	irgsp1_rep	CDS	1602247	1602352	.	+	1	Parent=Os08t0128000-02
Chr08	irgsp1_rep	CDS	1602684	1602890	.	+	0	Parent=Os08t0128000-02
Chr08	irgsp1_rep	CDS	1602983	1603147	.	+	0	Parent=Os08t0128000-02
Chr08	irgsp1_rep	three_prime_UTR	1603148	1603380	.	+	.	Parent=Os08t0128000-02
Chr08	irgsp1_rep	mRNA	1606299	1609517	.	+	.	ID=Os08t0128200-01;Name=Os08t0128200-01;Locus_id=Os08g0128200;Note=Protein of unknown function DUF3537 domain containing protein.;Transcript_evidence=AK120428 (DDBJ%2C Best hit);ORF_evidence=B9FYW5 (UniProt);InterPro=Protein of unknown function DUF3537 (IPR021924);NIAS_FLcDNA=J013095K19;Expression=AK120428;TENOR=Os08t0128200-01;KEGG=Os08t0128200-01
Chr08	irgsp1_rep	five_prime_UTR	1606299	1606314	.	+	.	Parent=Os08t0128200-01
Chr08	irgsp1_rep	CDS	1606315	1606848	.	+	0	Parent=Os08t0128200-01
Chr08	irgsp1_rep	CDS	1607833	1608264	.	+	0	Parent=Os08t0128200-01
Chr08	irgsp1_rep	CDS	1608355	1608667	.	+	0	Parent=Os08t0128200-01
Chr08	irgsp1_rep	CDS	1608877	1609049	.	+	2	Parent=Os08t0128200-01
Chr08	irgsp1_rep	three_prime_UTR	1609050	1609517	.	+	.	Parent=Os08t0128200-01
Chr08	irgsp1_rep	mRNA	1609757	1614807	.	-	.	ID=Os08t0128300-01;Name=Os08t0128300-01;Locus_id=Os08g0128300;Note=Similar to Actin-like protein 3 (Actin-related protein 3).;Transcript_evidence=AK103383 (DDBJ%2C Best hit);ORF_evidence=NP_001147653.1 (RefSeq);GO=Biological Process: regulation of actin filament polymerization (GO:0030833),Cellular Component: cytoskeleton (GO:0005856),Molecular Function: actin binding (GO:0003779),Molecular Function: ATP binding (GO:0005524);InterPro=Actin-like (IPR004000),Actin-related protein 3 (IPR015623);NIAS_FLcDNA=J033127G06;Expression=AK103383;TENOR=Os08t0128300-01;KEGG=Os08t0128300-01
Chr08	irgsp1_rep	five_prime_UTR	1614539	1614807	.	-	.	Parent=Os08t0128300-01
Chr08	irgsp1_rep	CDS	1614492	1614538	.	-	0	Parent=Os08t0128300-01
Chr08	irgsp1_rep	CDS	1613512	1613746	.	-	1	Parent=Os08t0128300-01
Chr08	irgsp1_rep	CDS	1613166	1613420	.	-	0	Parent=Os08t0128300-01
Chr08	irgsp1_rep	CDS	1612497	1612502	.	-	0	Parent=Os08t0128300-01
Chr08	irgsp1_rep	three_prime_UTR	1612369	1612496	.	-	.	Parent=Os08t0128300-01
Chr08	irgsp1_rep	three_prime_UTR	1612010	1612102	.	-	.	Parent=Os08t0128300-01
Chr08	irgsp1_rep	three_prime_UTR	1611334	1611453	.	-	.	Parent=Os08t0128300-01
Chr08	irgsp1_rep	three_prime_UTR	1610748	1610858	.	-	.	Parent=Os08t0128300-01
Chr08	irgsp1_rep	three_prime_UTR	1610548	1610673	.	-	.	Parent=Os08t0128300-01
Chr08	irgsp1_rep	three_prime_UTR	1610315	1610407	.	-	.	Parent=Os08t0128300-01
Chr08	irgsp1_rep	three_prime_UTR	1609757	1610127	.	-	.	Parent=Os08t0128300-01
Chr08	irgsp1_rep	mRNA	1619222	1621388	.	+	.	ID=Os08t0128500-00;Name=Os08t0128500-00;Locus_id=Os08g0128500;Note=Similar to 60S ribosomal protein L37 (Fragment).;Transcript_evidence=CT828270 (DDBJ%2C Best hit);ORF_evidence=B8BAF5 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L37e (IPR001569),Ribosomal protein L37ae/L37e%2C N-terminal (IPR011331),Ribosomal protein%2C zinc-binding domain (IPR011332),Ribosomal protein L37e%2C conserved site (IPR018267);TENOR=Os08t0128500-00;KEGG=Os08t0128500-00
Chr08	irgsp1_rep	five_prime_UTR	1619222	1619282	.	+	.	Parent=Os08t0128500-00
Chr08	irgsp1_rep	CDS	1619283	1619285	.	+	0	Parent=Os08t0128500-00
Chr08	irgsp1_rep	CDS	1619371	1619506	.	+	0	Parent=Os08t0128500-00
Chr08	irgsp1_rep	CDS	1620969	1621070	.	+	2	Parent=Os08t0128500-00
Chr08	irgsp1_rep	CDS	1621178	1621221	.	+	2	Parent=Os08t0128500-00
Chr08	irgsp1_rep	three_prime_UTR	1621222	1621388	.	+	.	Parent=Os08t0128500-00
Chr08	irgsp1_rep	mRNA	1628504	1631173	.	+	.	ID=Os08t0128700-01;Name=Os08t0128700-01;Locus_id=Os08g0128700;Oryzabase Gene Symbol Synonym(s)=OsMB18%2C MB18;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 18%2C MDC protein with a BTB domain 18%2C MDC protein having BTB domain 18;Note=Kelch related domain containing protein.;Transcript_evidence=AK108671 (DDBJ%2C Best hit);ORF_evidence=A2YQV7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);NIAS_FLcDNA=002-148-H05;Oryzabase=21212;Expression=AK108671;TENOR=Os08t0128700-01;KEGG=Os08t0128700-01
Chr08	irgsp1_rep	five_prime_UTR	1628504	1628887	.	+	.	Parent=Os08t0128700-01
Chr08	irgsp1_rep	five_prime_UTR	1629760	1629798	.	+	.	Parent=Os08t0128700-01
Chr08	irgsp1_rep	CDS	1629799	1630911	.	+	0	Parent=Os08t0128700-01
Chr08	irgsp1_rep	three_prime_UTR	1630912	1631173	.	+	.	Parent=Os08t0128700-01
Chr08	irgsp1_rep	mRNA	1634452	1635537	.	+	.	ID=Os08t0128900-00;Name=Os08t0128900-00;Locus_id=Os08g0128900;Oryzabase Gene Symbol Synonym(s)=OsMB17%2C MB17;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 17%2C MDC protein with a BTB domain 17%2C MDC protein having BTB domain 17;Note=BTB/POZ-like domain containing protein.;Transcript_evidence=EU951851 (DDBJ);ORF_evidence=A3BPA6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);Oryzabase=21211;TENOR=Os08t0128900-00
Chr08	irgsp1_rep	CDS	1634452	1635537	.	+	0	Parent=Os08t0128900-00
Chr08	irgsp1_rep	mRNA	1645023	1646004	.	-	.	ID=Os08t0129200-02;Name=Os08t0129200-02;Locus_id=Os08g0129200;Oryzabase Gene Symbol Synonym(s)=OsCSP2%2C CPS2;Oryzabase Gene Name Synonym(s)=cold shock domain protein 2%2C CSD protein 2%2C Glycine-rich protein 2%2C cold shock protein 2;Note=Similar to Cold shock protein-1.;Transcript_evidence=AK101577 (DDBJ%2C Best hit),AK070034 (DDBJ%2C Best hit);ORF_evidence=B6TP60 (UniProt);NIAS_FLcDNA=J033050L02,J023036A08;Oryzabase=14262;Expression=AK101577;TENOR=Os08t0129200-02;KEGG=Os08t0129200-02
Chr08	irgsp1_rep	five_prime_UTR	1645917	1646004	.	-	.	Parent=Os08t0129200-02
Chr08	irgsp1_rep	CDS	1645323	1645916	.	-	0	Parent=Os08t0129200-02
Chr08	irgsp1_rep	three_prime_UTR	1645023	1645322	.	-	.	Parent=Os08t0129200-02
Chr08	irgsp1_rep	mRNA	1645265	1647486	.	+	.	ID=Os08t0129300-00;Name=Os08t0129300-00;Locus_id=Os08g0129300;Note=BTB/POZ-like domain containing protein.;Transcript_evidence=AK366586 (DDBJ);ORF_evidence=Q84UR7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);TENOR=Os08t0129300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	1645265	1645683	.	+	0	Parent=Os08t0129300-00
Chr08	irgsp1_rep	CDS	1646367	1647486	.	+	1	Parent=Os08t0129300-00
Chr08	irgsp1_rep	mRNA	1648442	1649032	.	+	.	ID=Os08t0129400-00;Name=Os08t0129400-00;Locus_id=Os08g0129400;Note=MATH domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q84UR6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=MATH (IPR002083),TRAF-like (IPR008974),TRAF-type (IPR013322);TENOR=Os08t0129400-00
Chr08	irgsp1_rep	CDS	1648442	1649032	.	+	0	Parent=Os08t0129400-00
Chr08	irgsp1_rep	mRNA	1649042	1652609	.	-	.	ID=Os08t0129500-01;Name=Os08t0129500-01;Locus_id=Os08g0129500;Note=Conserved hypothetical protein.;Transcript_evidence=AK122021 (DDBJ%2C Best hit);ORF_evidence=B9FYX0 (UniProt);NIAS_FLcDNA=J033111O03;Expression=AK122021;TENOR=Os08t0129500-01;KEGG=Os08t0129500-01
Chr08	irgsp1_rep	five_prime_UTR	1652474	1652609	.	-	.	Parent=Os08t0129500-01
Chr08	irgsp1_rep	CDS	1652280	1652473	.	-	0	Parent=Os08t0129500-01
Chr08	irgsp1_rep	CDS	1652084	1652145	.	-	1	Parent=Os08t0129500-01
Chr08	irgsp1_rep	CDS	1650164	1650254	.	-	2	Parent=Os08t0129500-01
Chr08	irgsp1_rep	CDS	1650001	1650082	.	-	1	Parent=Os08t0129500-01
Chr08	irgsp1_rep	CDS	1649253	1649900	.	-	0	Parent=Os08t0129500-01
Chr08	irgsp1_rep	three_prime_UTR	1649042	1649252	.	-	.	Parent=Os08t0129500-01
Chr08	irgsp1_rep	mRNA	1653284	1658274	.	-	.	ID=Os08t0129600-01;Name=Os08t0129600-01;Locus_id=Os08g0129600;Note=Conserved hypothetical protein.;Transcript_evidence=AK102166 (DDBJ%2C Best hit);ORF_evidence=A2YQW7 (UniProt);NIAS_FLcDNA=J033086H09;TENOR=Os08t0129600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	1657953	1658274	.	-	.	Parent=Os08t0129600-01
Chr08	irgsp1_rep	five_prime_UTR	1657137	1657165	.	-	.	Parent=Os08t0129600-01
Chr08	irgsp1_rep	CDS	1656294	1657136	.	-	0	Parent=Os08t0129600-01
Chr08	irgsp1_rep	CDS	1655245	1656201	.	-	0	Parent=Os08t0129600-01
Chr08	irgsp1_rep	CDS	1654994	1655125	.	-	0	Parent=Os08t0129600-01
Chr08	irgsp1_rep	CDS	1654737	1654918	.	-	0	Parent=Os08t0129600-01
Chr08	irgsp1_rep	CDS	1654521	1654632	.	-	1	Parent=Os08t0129600-01
Chr08	irgsp1_rep	CDS	1653928	1654071	.	-	0	Parent=Os08t0129600-01
Chr08	irgsp1_rep	CDS	1653513	1653596	.	-	0	Parent=Os08t0129600-01
Chr08	irgsp1_rep	three_prime_UTR	1653284	1653512	.	-	.	Parent=Os08t0129600-01
Chr08	irgsp1_rep	mRNA	1666969	1671976	.	+	.	ID=Os08t0129700-01;Name=Os08t0129700-01;Locus_id=Os08g0129700;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK065715 (DDBJ%2C Best hit);ORF_evidence=Q2LC81 (UniProt);GO=Biological Process: galactose metabolic process (GO:0006012),Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: UDP-glucose 4-epimerase activity (GO:0003978),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),UDP-glucose 4-epimerase (IPR005886),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013041C03;Expression=AK065715;TENOR=Os08t0129700-01;KEGG=Os08t0129700-01
Chr08	irgsp1_rep	five_prime_UTR	1666969	1667156	.	+	.	Parent=Os08t0129700-01
Chr08	irgsp1_rep	five_prime_UTR	1667466	1667586	.	+	.	Parent=Os08t0129700-01
Chr08	irgsp1_rep	CDS	1667587	1667626	.	+	0	Parent=Os08t0129700-01
Chr08	irgsp1_rep	CDS	1668444	1668568	.	+	2	Parent=Os08t0129700-01
Chr08	irgsp1_rep	CDS	1669475	1669588	.	+	0	Parent=Os08t0129700-01
Chr08	irgsp1_rep	CDS	1669672	1669779	.	+	0	Parent=Os08t0129700-01
Chr08	irgsp1_rep	CDS	1669864	1669955	.	+	0	Parent=Os08t0129700-01
Chr08	irgsp1_rep	CDS	1670281	1670422	.	+	1	Parent=Os08t0129700-01
Chr08	irgsp1_rep	CDS	1670561	1670658	.	+	0	Parent=Os08t0129700-01
Chr08	irgsp1_rep	CDS	1670741	1670870	.	+	1	Parent=Os08t0129700-01
Chr08	irgsp1_rep	CDS	1671085	1671229	.	+	0	Parent=Os08t0129700-01
Chr08	irgsp1_rep	CDS	1671508	1671734	.	+	2	Parent=Os08t0129700-01
Chr08	irgsp1_rep	three_prime_UTR	1671735	1671976	.	+	.	Parent=Os08t0129700-01
Chr08	irgsp1_rep	mRNA	1667028	1672005	.	+	.	ID=Os08t0129700-02;Name=Os08t0129700-02;Locus_id=Os08g0129700;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK099222 (DDBJ%2C Best hit);ORF_evidence=Q2LC81 (UniProt);GO=Biological Process: galactose metabolic process (GO:0006012),Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: UDP-glucose 4-epimerase activity (GO:0003978),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),UDP-glucose 4-epimerase (IPR005886),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013091G23;Expression=AK099222;TENOR=Os08t0129700-02;KEGG=Os08t0129700-02
Chr08	irgsp1_rep	five_prime_UTR	1667028	1667156	.	+	.	Parent=Os08t0129700-02
Chr08	irgsp1_rep	five_prime_UTR	1667466	1667586	.	+	.	Parent=Os08t0129700-02
Chr08	irgsp1_rep	CDS	1667587	1667626	.	+	0	Parent=Os08t0129700-02
Chr08	irgsp1_rep	CDS	1668444	1668568	.	+	2	Parent=Os08t0129700-02
Chr08	irgsp1_rep	CDS	1669475	1669588	.	+	0	Parent=Os08t0129700-02
Chr08	irgsp1_rep	CDS	1669672	1669779	.	+	0	Parent=Os08t0129700-02
Chr08	irgsp1_rep	CDS	1669864	1669955	.	+	0	Parent=Os08t0129700-02
Chr08	irgsp1_rep	CDS	1670281	1670422	.	+	1	Parent=Os08t0129700-02
Chr08	irgsp1_rep	CDS	1670561	1670658	.	+	0	Parent=Os08t0129700-02
Chr08	irgsp1_rep	CDS	1670741	1670870	.	+	1	Parent=Os08t0129700-02
Chr08	irgsp1_rep	CDS	1671085	1671229	.	+	0	Parent=Os08t0129700-02
Chr08	irgsp1_rep	CDS	1671508	1671734	.	+	2	Parent=Os08t0129700-02
Chr08	irgsp1_rep	three_prime_UTR	1671735	1672005	.	+	.	Parent=Os08t0129700-02
Chr08	irgsp1_rep	mRNA	1675042	1676747	.	+	.	ID=Os08t0129800-01;Name=Os08t0129800-01;Locus_id=Os08g0129800;Oryzabase Gene Name Synonym(s)=Ribosomal protein YL41;Note=Hypothetical conserved gene.;Transcript_evidence=AK105083 (DDBJ%2C Best hit);ORF_evidence=A6N1B0 (UniProt);NIAS_FLcDNA=001-046-F02;Oryzabase=17683;Expression=AK105083;TENOR=Os08t0129800-01;KEGG=Os08t0129800-01
Chr08	irgsp1_rep	five_prime_UTR	1675042	1675116	.	+	.	Parent=Os08t0129800-01
Chr08	irgsp1_rep	five_prime_UTR	1676382	1676492	.	+	.	Parent=Os08t0129800-01
Chr08	irgsp1_rep	CDS	1676493	1676693	.	+	0	Parent=Os08t0129800-01
Chr08	irgsp1_rep	three_prime_UTR	1676694	1676747	.	+	.	Parent=Os08t0129800-01
Chr08	irgsp1_rep	mRNA	1675044	1676695	.	+	.	ID=Os08t0129800-02;Name=Os08t0129800-02;Locus_id=Os08g0129800;Oryzabase Gene Name Synonym(s)=Ribosomal protein YL41;Note=Hypothetical conserved gene.;Transcript_evidence=AK065009 (DDBJ%2C Best hit);ORF_evidence=A6N1B0 (UniProt);NIAS_FLcDNA=J013001E24;Oryzabase=17683;TENOR=Os08t0129800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	1675044	1676492	.	+	.	Parent=Os08t0129800-02
Chr08	irgsp1_rep	CDS	1676493	1676693	.	+	0	Parent=Os08t0129800-02
Chr08	irgsp1_rep	three_prime_UTR	1676694	1676695	.	+	.	Parent=Os08t0129800-02
Chr08	irgsp1_rep	mRNA	1677893	1680665	.	+	.	ID=Os08t0129900-00;Name=Os08t0129900-00;Locus_id=Os08g0129900;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001175367.1 (RefSeq);TENOR=Os08t0129900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	1677893	1678124	.	+	0	Parent=Os08t0129900-00
Chr08	irgsp1_rep	CDS	1679311	1679475	.	+	2	Parent=Os08t0129900-00
Chr08	irgsp1_rep	CDS	1680565	1680665	.	+	2	Parent=Os08t0129900-00
Chr08	irgsp1_rep	mRNA	1681534	1684144	.	-	.	ID=Os08t0130000-00;Name=Os08t0130000-00;Locus_id=Os08g0130000;Oryzabase Gene Symbol Synonym(s)=OsSTA203;Note=Putative DNA binding domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_178511.2 (RefSeq);GO=Biological Process: metal ion transport (GO:0030001),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: metal ion transmembrane transporter activity (GO:0046873);InterPro=Mg2+ transporter protein%2C CorA-like/Zinc transport protein ZntB (IPR002523);Oryzabase=19479;TENOR=Os08t0130000-00;KEGG=Os08t0130000-00
Chr08	irgsp1_rep	CDS	1683337	1684144	.	-	0	Parent=Os08t0130000-00
Chr08	irgsp1_rep	CDS	1682248	1682327	.	-	2	Parent=Os08t0130000-00
Chr08	irgsp1_rep	CDS	1681865	1682129	.	-	0	Parent=Os08t0130000-00
Chr08	irgsp1_rep	CDS	1681534	1681784	.	-	2	Parent=Os08t0130000-00
Chr08	irgsp1_rep	mRNA	1686254	1688804	.	-	.	ID=Os08t0130100-01;Name=Os08t0130100-01;Locus_id=Os08g0130100;Oryzabase Gene Symbol Synonym(s)=OsLSD3;Note=Zinc finger%2C LSD1-type domain containing protein.;Transcript_evidence=AK120454 (DDBJ%2C Best hit);ORF_evidence=Q84UR0 (UniProt);InterPro=Zinc finger%2C LSD1-type (IPR005735);NIAS_FLcDNA=J013104B05;Oryzabase=19843;Expression=AK120454;TENOR=Os08t0130100-01;KEGG=Os08t0130100-01
Chr08	irgsp1_rep	five_prime_UTR	1688680	1688804	.	-	.	Parent=Os08t0130100-01
Chr08	irgsp1_rep	five_prime_UTR	1688443	1688446	.	-	.	Parent=Os08t0130100-01
Chr08	irgsp1_rep	CDS	1688214	1688442	.	-	0	Parent=Os08t0130100-01
Chr08	irgsp1_rep	CDS	1687965	1688074	.	-	2	Parent=Os08t0130100-01
Chr08	irgsp1_rep	CDS	1687006	1687068	.	-	0	Parent=Os08t0130100-01
Chr08	irgsp1_rep	CDS	1686544	1686585	.	-	0	Parent=Os08t0130100-01
Chr08	irgsp1_rep	three_prime_UTR	1686254	1686543	.	-	.	Parent=Os08t0130100-01
Chr08	irgsp1_rep	mRNA	1707274	1709123	.	+	.	ID=Os08t0130250-01;Name=Os08t0130250-01;Locus_id=Os08g0130250;Note=Non-protein coding transcript.;Transcript_evidence=AK240839 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065016C16;TENOR=Os08t0130250-01
Chr08	irgsp1_rep	exon	1707274	1709123	.	+	.	Parent=Os08t0130250-01
Chr08	irgsp1_rep	mRNA	1711379	1715074	.	-	.	ID=Os08t0130300-00;Name=Os08t0130300-00;Locus_id=Os08g0130300;Note=Hypothetical conserved gene.;Transcript_evidence=AK376532 (DDBJ);ORF_evidence=NP_001060921.2 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide TPR-1 (IPR001440),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);TENOR=Os08t0130300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	1715014	1715074	.	-	.	Parent=Os08t0130300-00
Chr08	irgsp1_rep	CDS	1714729	1715013	.	-	0	Parent=Os08t0130300-00
Chr08	irgsp1_rep	CDS	1713619	1713831	.	-	0	Parent=Os08t0130300-00
Chr08	irgsp1_rep	CDS	1713284	1713432	.	-	0	Parent=Os08t0130300-00
Chr08	irgsp1_rep	CDS	1713144	1713212	.	-	1	Parent=Os08t0130300-00
Chr08	irgsp1_rep	CDS	1711393	1712674	.	-	1	Parent=Os08t0130300-00
Chr08	irgsp1_rep	three_prime_UTR	1711379	1711392	.	-	.	Parent=Os08t0130300-00
Chr08	irgsp1_rep	mRNA	1716498	1719881	.	-	.	ID=Os08t0130400-01;Name=Os08t0130400-01;Locus_id=Os08g0130400;Note=AMP-dependent synthetase/ligase domain containing protein.;Transcript_evidence=AK065929 (DDBJ%2C Best hit);ORF_evidence=A2YQX4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873),AMP-binding%2C conserved site (IPR020845);NIAS_FLcDNA=J013044N22;TENOR=Os08t0130400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	1719852	1719881	.	-	.	Parent=Os08t0130400-01
Chr08	irgsp1_rep	CDS	1719655	1719851	.	-	0	Parent=Os08t0130400-01
Chr08	irgsp1_rep	CDS	1719453	1719525	.	-	1	Parent=Os08t0130400-01
Chr08	irgsp1_rep	CDS	1719126	1719294	.	-	0	Parent=Os08t0130400-01
Chr08	irgsp1_rep	CDS	1718892	1719002	.	-	2	Parent=Os08t0130400-01
Chr08	irgsp1_rep	CDS	1718632	1718729	.	-	2	Parent=Os08t0130400-01
Chr08	irgsp1_rep	CDS	1718302	1718495	.	-	0	Parent=Os08t0130400-01
Chr08	irgsp1_rep	CDS	1718200	1718209	.	-	1	Parent=Os08t0130400-01
Chr08	irgsp1_rep	three_prime_UTR	1718089	1718199	.	-	.	Parent=Os08t0130400-01
Chr08	irgsp1_rep	three_prime_UTR	1717505	1717878	.	-	.	Parent=Os08t0130400-01
Chr08	irgsp1_rep	three_prime_UTR	1717183	1717391	.	-	.	Parent=Os08t0130400-01
Chr08	irgsp1_rep	three_prime_UTR	1716498	1716787	.	-	.	Parent=Os08t0130400-01
Chr08	irgsp1_rep	mRNA	1720421	1723137	.	-	.	ID=Os08t0130500-01;Name=Os08t0130500-01;Locus_id=Os08g0130500;Oryzabase Gene Symbol Synonym(s)=YK704%2C Os60sP0;Oryzabase Gene Name Synonym(s)=Acidic Ribosomal Phosphoprotein P0%2C acidic ribosomal protein P0%2C 60S acidic ribosomal protein P0;Note=60S acidic ribosomal protein P0.;Transcript_evidence=AK064857 (DDBJ%2C Best hit);ORF_evidence=NP_001105482.1 (RefSeq);GO=Biological Process: translational elongation (GO:0006414),Biological Process: ribosome biogenesis (GO:0042254),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L10/acidic P0 (IPR001790),Ribosomal protein 60S (IPR001813);NIAS_FLcDNA=J013000H12;Oryzabase=13760;Expression=AK064857;TENOR=Os08t0130500-01;KEGG=Os08t0130500-01
Chr08	irgsp1_rep	five_prime_UTR	1723010	1723137	.	-	.	Parent=Os08t0130500-01
Chr08	irgsp1_rep	CDS	1722752	1723009	.	-	0	Parent=Os08t0130500-01
Chr08	irgsp1_rep	CDS	1722592	1722660	.	-	0	Parent=Os08t0130500-01
Chr08	irgsp1_rep	CDS	1721623	1721721	.	-	0	Parent=Os08t0130500-01
Chr08	irgsp1_rep	CDS	1721139	1721531	.	-	0	Parent=Os08t0130500-01
Chr08	irgsp1_rep	CDS	1720568	1720708	.	-	0	Parent=Os08t0130500-01
Chr08	irgsp1_rep	three_prime_UTR	1720421	1720567	.	-	.	Parent=Os08t0130500-01
Chr08	irgsp1_rep	mRNA	1720419	1721299	.	-	.	ID=Os08t0130500-02;Name=Os08t0130500-02;Locus_id=Os08g0130500;Oryzabase Gene Symbol Synonym(s)=YK704%2C Os60sP0;Oryzabase Gene Name Synonym(s)=Acidic Ribosomal Phosphoprotein P0%2C acidic ribosomal protein P0%2C 60S acidic ribosomal protein P0;Note=Similar to 60S acidic ribosomal protein p0.;Transcript_evidence=AK062008 (DDBJ%2C Best hit);ORF_evidence=A6N1T9 (UniProt);GO=Biological Process: translational elongation (GO:0006414),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein 60S (IPR001813);NIAS_FLcDNA=001-043-E02;Oryzabase=13760;Expression=AK062008;TENOR=Os08t0130500-02;KEGG=Os08t0130500-02
Chr08	irgsp1_rep	five_prime_UTR	1721298	1721299	.	-	.	Parent=Os08t0130500-02
Chr08	irgsp1_rep	CDS	1721139	1721297	.	-	0	Parent=Os08t0130500-02
Chr08	irgsp1_rep	CDS	1720568	1720708	.	-	0	Parent=Os08t0130500-02
Chr08	irgsp1_rep	three_prime_UTR	1720419	1720567	.	-	.	Parent=Os08t0130500-02
Chr08	irgsp1_rep	mRNA	1720507	1723137	.	+	.	ID=Os08t0130550-00;Name=Os08t0130550-00;Locus_id=Os08g0130550;Note=Hypothetical protein.;Transcript_evidence=AK371367 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0130550-00
Chr08	irgsp1_rep	five_prime_UTR	1720507	1720555	.	+	.	Parent=Os08t0130550-00
Chr08	irgsp1_rep	CDS	1720556	1720705	.	+	0	Parent=Os08t0130550-00
Chr08	irgsp1_rep	CDS	1721134	1721373	.	+	0	Parent=Os08t0130550-00
Chr08	irgsp1_rep	three_prime_UTR	1721374	1721533	.	+	.	Parent=Os08t0130550-00
Chr08	irgsp1_rep	three_prime_UTR	1721630	1721723	.	+	.	Parent=Os08t0130550-00
Chr08	irgsp1_rep	three_prime_UTR	1722586	1722654	.	+	.	Parent=Os08t0130550-00
Chr08	irgsp1_rep	three_prime_UTR	1722742	1723137	.	+	.	Parent=Os08t0130550-00
Chr08	irgsp1_rep	mRNA	1723655	1729958	.	-	.	ID=Os08t0130600-01;Name=Os08t0130600-01;Locus_id=Os08g0130600;Note=BTB domain containing protein.;Transcript_evidence=AK100956 (DDBJ%2C Best hit);ORF_evidence=D9ZIR1 (UniProt);GO=Biological Process: response to light stimulus (GO:0009416),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),NPH3 (IPR004249),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069);NIAS_FLcDNA=J023140F10;Expression=AK100956;TENOR=Os08t0130600-01;KEGG=Os08t0130600-01
Chr08	irgsp1_rep	five_prime_UTR	1729157	1729958	.	-	.	Parent=Os08t0130600-01
Chr08	irgsp1_rep	CDS	1729098	1729156	.	-	0	Parent=Os08t0130600-01
Chr08	irgsp1_rep	CDS	1726902	1726971	.	-	1	Parent=Os08t0130600-01
Chr08	irgsp1_rep	CDS	1725200	1726426	.	-	0	Parent=Os08t0130600-01
Chr08	irgsp1_rep	CDS	1724040	1724609	.	-	0	Parent=Os08t0130600-01
Chr08	irgsp1_rep	three_prime_UTR	1723655	1724039	.	-	.	Parent=Os08t0130600-01
Chr08	irgsp1_rep	mRNA	1724073	1724802	.	+	.	ID=Os08t0130700-01;Name=Os08t0130700-01;Locus_id=Os08g0130700;Note=Conserved hypothetical protein.;Transcript_evidence=AK242232 (DDBJ%2C Best hit);ORF_evidence=NP_001175368.1 (RefSeq);NIAS_FLcDNA=J075177B07;TENOR=Os08t0130700-01;KEGG=Os08t0130700-01
Chr08	irgsp1_rep	five_prime_UTR	1724073	1724193	.	+	.	Parent=Os08t0130700-01
Chr08	irgsp1_rep	CDS	1724194	1724517	.	+	0	Parent=Os08t0130700-01
Chr08	irgsp1_rep	three_prime_UTR	1724518	1724802	.	+	.	Parent=Os08t0130700-01
Chr08	irgsp1_rep	mRNA	1744492	1749089	.	+	.	ID=Os08t0130900-01;Name=Os08t0130900-01;Locus_id=Os08g0130900;Note=Similar to galactosyltransferase family.;Transcript_evidence=AK243240 (DDBJ%2C Best hit);ORF_evidence=B6SXL2 (UniProt);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: sugar binding (GO:0005529),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Galectin%2C carbohydrate recognition domain (IPR001079),Glycosyl transferase%2C family 31 (IPR002659),Concanavalin A-like lectin/glucanase (IPR008985),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320);NIAS_FLcDNA=J100045O14;TENOR=Os08t0130900-01;KEGG=Os08t0130900-01
Chr08	irgsp1_rep	five_prime_UTR	1744492	1744664	.	+	.	Parent=Os08t0130900-01
Chr08	irgsp1_rep	CDS	1744665	1745448	.	+	0	Parent=Os08t0130900-01
Chr08	irgsp1_rep	CDS	1746027	1746259	.	+	2	Parent=Os08t0130900-01
Chr08	irgsp1_rep	CDS	1746346	1746636	.	+	0	Parent=Os08t0130900-01
Chr08	irgsp1_rep	CDS	1747256	1747384	.	+	0	Parent=Os08t0130900-01
Chr08	irgsp1_rep	CDS	1747866	1748039	.	+	0	Parent=Os08t0130900-01
Chr08	irgsp1_rep	CDS	1748227	1748334	.	+	0	Parent=Os08t0130900-01
Chr08	irgsp1_rep	CDS	1748417	1748623	.	+	0	Parent=Os08t0130900-01
Chr08	irgsp1_rep	three_prime_UTR	1748624	1749089	.	+	.	Parent=Os08t0130900-01
Chr08	irgsp1_rep	mRNA	1749850	1752468	.	+	.	ID=Os08t0131000-02;Name=Os08t0131000-02;Locus_id=Os08g0131000;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK067165 (DDBJ%2C Best hit),AK100132 (DDBJ%2C Best hit),AK101091 (DDBJ%2C Best hit);ORF_evidence=F1BL93 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013096N08,J023010C03,J033024M15;Expression=AK067165;TENOR=Os08t0131000-02;KEGG=Os08t0131000-02
Chr08	irgsp1_rep	five_prime_UTR	1749850	1749909	.	+	.	Parent=Os08t0131000-02
Chr08	irgsp1_rep	CDS	1749910	1751934	.	+	0	Parent=Os08t0131000-02
Chr08	irgsp1_rep	three_prime_UTR	1751935	1752468	.	+	.	Parent=Os08t0131000-02
Chr08	irgsp1_rep	mRNA	1752707	1755525	.	+	.	ID=Os08t0131100-01;Name=Os08t0131100-01;Locus_id=Os08g0131100;RAP-DB Gene Symbol Synonym(s)=CYP703A3;RAP-DB Gene Name Synonym(s)=cytoChrome P450 hydroxylase 703A3;CGSNL Gene Symbol=CYP703A3;CGSNL Gene Name=CYTOCHROME P450 HYDROXYLASE 703A3;Oryzabase Gene Symbol Synonym(s)=OsCYP703A3;Note=CytoChrome P450 hydroxylase%2C Anther cuticle and pollen exine development;Transcript_evidence=AK106843,Inferred from literature;ORF_evidence=Q7EZR4;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 superfamily (IPR036396),CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=002-116-H10;Manual Curation=February 16%2C 2018;Literature_PMID=29355682,24798002;Oryzabase=8501;Expression=AK106843;TENOR=Os08t0131100-01;KEGG=Os08t0131100-01 (EC:1.14.13.206);B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	1752707	1753125	.	+	.	Parent=Os08t0131100-01
Chr08	irgsp1_rep	CDS	1753126	1754040	.	+	0	Parent=Os08t0131100-01
Chr08	irgsp1_rep	CDS	1754673	1755335	.	+	0	Parent=Os08t0131100-01
Chr08	irgsp1_rep	three_prime_UTR	1755336	1755525	.	+	.	Parent=Os08t0131100-01
Chr08	irgsp1_rep	mRNA	1754670	1755296	.	-	.	ID=Os08t0131150-00;Name=Os08t0131150-00;Locus_id=Os08g0131150;Note=Hypothetical protein.;Transcript_evidence=EU942896 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0131150-00
Chr08	irgsp1_rep	CDS	1754700	1755296	.	-	0	Parent=Os08t0131150-00
Chr08	irgsp1_rep	three_prime_UTR	1754670	1754699	.	-	.	Parent=Os08t0131150-00
Chr08	irgsp1_rep	mRNA	1755976	1757069	.	+	.	ID=Os08t0131200-01;Name=Os08t0131200-01;Locus_id=Os08g0131200;Oryzabase Gene Symbol Synonym(s)=OsLTP1.7%2C OsLtpI.7;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein 1.7%2C lipid transfer protein 1.7%2C type 1 non-specific lipid transfer protein 7;Note=Similar to Non-specific lipid-transfer protein.;Transcript_evidence=AK063493 (DDBJ%2C Best hit);ORF_evidence=A2YQX8 (UniProt);NIAS_FLcDNA=001-116-C12;Oryzabase=13516;TENOR=Os08t0131200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	1755976	1756344	.	+	0	Parent=Os08t0131200-01
Chr08	irgsp1_rep	CDS	1756892	1756948	.	+	0	Parent=Os08t0131200-01
Chr08	irgsp1_rep	three_prime_UTR	1756949	1757069	.	+	.	Parent=Os08t0131200-01
Chr08	irgsp1_rep	mRNA	1757687	1759219	.	-	.	ID=Os08t0131300-00;Name=Os08t0131300-00;Locus_id=Os08g0131300;Oryzabase Gene Symbol Synonym(s)=GPAT;Oryzabase Gene Name Synonym(s)=glycerol-3-phosphate acyltransferase;Note=Phospholipid/glycerol acyltransferase domain containing protein.;Transcript_evidence=EU965540 (DDBJ);ORF_evidence=Q69R60 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Phospholipid/glycerol acyltransferase (IPR002123);Oryzabase=21981;TENOR=Os08t0131300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	1757711	1759219	.	-	0	Parent=Os08t0131300-00
Chr08	irgsp1_rep	three_prime_UTR	1757687	1757710	.	-	.	Parent=Os08t0131300-00
Chr08	irgsp1_rep	mRNA	1793422	1794292	.	-	.	ID=Os08t0132000-00;Name=Os08t0132000-00;Locus_id=Os08g0132000;Note=Conserved hypothetical protein.;Transcript_evidence=AK374595 (DDBJ);ORF_evidence=A2YQY2 (UniProt);TENOR=Os08t0132000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	1794171	1794292	.	-	.	Parent=Os08t0132000-00
Chr08	irgsp1_rep	CDS	1794144	1794170	.	-	0	Parent=Os08t0132000-00
Chr08	irgsp1_rep	CDS	1793422	1794045	.	-	0	Parent=Os08t0132000-00
Chr08	irgsp1_rep	mRNA	1795779	1801269	.	+	.	ID=Os08t0132100-00;Name=Os08t0132100-00;Locus_id=Os08g0132100;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A3BPD0 (UniProt);TENOR=Os08t0132100-00;KEGG=Os08t0132100-00
Chr08	irgsp1_rep	CDS	1795779	1795977	.	+	0	Parent=Os08t0132100-00
Chr08	irgsp1_rep	CDS	1796303	1796605	.	+	2	Parent=Os08t0132100-00
Chr08	irgsp1_rep	CDS	1799724	1799941	.	+	2	Parent=Os08t0132100-00
Chr08	irgsp1_rep	CDS	1800649	1801269	.	+	0	Parent=Os08t0132100-00
Chr08	irgsp1_rep	mRNA	1828243	1831254	.	+	.	ID=Os08t0132400-01;Name=Os08t0132400-01;Locus_id=Os08g0132400;Note=Hypothetical protein.;Transcript_evidence=AK111258 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-180-E10;Expression=AK111258;TENOR=Os08t0132400-01;KEGG=Os08t0132400-01
Chr08	irgsp1_rep	five_prime_UTR	1828243	1828412	.	+	.	Parent=Os08t0132400-01
Chr08	irgsp1_rep	five_prime_UTR	1830674	1830992	.	+	.	Parent=Os08t0132400-01
Chr08	irgsp1_rep	CDS	1830993	1831241	.	+	0	Parent=Os08t0132400-01
Chr08	irgsp1_rep	three_prime_UTR	1831242	1831254	.	+	.	Parent=Os08t0132400-01
Chr08	irgsp1_rep	mRNA	1832709	1833116	.	+	.	ID=Os08t0132500-00;Name=Os08t0132500-00;Locus_id=Os08g0132500;Note=Conserved hypothetical protein.;Transcript_evidence=AK363691 (DDBJ);ORF_evidence=Q69R49 (UniProt);TENOR=Os08t0132500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	1832709	1832738	.	+	.	Parent=Os08t0132500-00
Chr08	irgsp1_rep	CDS	1832739	1833116	.	+	0	Parent=Os08t0132500-00
Chr08	irgsp1_rep	mRNA	1833558	1836588	.	+	.	ID=Os08t0132600-01;Name=Os08t0132600-01;Locus_id=Os08g0132600;Note=Conserved hypothetical protein.;Transcript_evidence=AK068578 (DDBJ%2C Best hit);ORF_evidence=B8BAG9 (UniProt);NIAS_FLcDNA=J013157I03;Expression=AK068578;TENOR=Os08t0132600-01;KEGG=Os08t0132600-01
Chr08	irgsp1_rep	five_prime_UTR	1833558	1833684	.	+	.	Parent=Os08t0132600-01
Chr08	irgsp1_rep	CDS	1833805	1834018	.	+	0	Parent=Os08t0132600-01
Chr08	irgsp1_rep	CDS	1834188	1834487	.	+	2	Parent=Os08t0132600-01
Chr08	irgsp1_rep	CDS	1834616	1834833	.	+	2	Parent=Os08t0132600-01
Chr08	irgsp1_rep	CDS	1835551	1836168	.	+	0	Parent=Os08t0132600-01
Chr08	irgsp1_rep	three_prime_UTR	1836169	1836588	.	+	.	Parent=Os08t0132600-01
Chr08	irgsp1_rep	mRNA	1833617	1836424	.	+	.	ID=Os08t0132600-02;Name=Os08t0132600-02;Locus_id=Os08g0132600;Note=Conserved hypothetical protein.;Transcript_evidence=AK105651 (DDBJ%2C Best hit);ORF_evidence=B8BAG9 (UniProt);NIAS_FLcDNA=001-200-G02;Expression=AK105651;TENOR=Os08t0132600-02;KEGG=Os08t0132600-02
Chr08	irgsp1_rep	five_prime_UTR	1833617	1833684	.	+	.	Parent=Os08t0132600-02
Chr08	irgsp1_rep	CDS	1833805	1834018	.	+	0	Parent=Os08t0132600-02
Chr08	irgsp1_rep	CDS	1834188	1834487	.	+	2	Parent=Os08t0132600-02
Chr08	irgsp1_rep	CDS	1834616	1834833	.	+	2	Parent=Os08t0132600-02
Chr08	irgsp1_rep	CDS	1835551	1836168	.	+	0	Parent=Os08t0132600-02
Chr08	irgsp1_rep	three_prime_UTR	1836169	1836424	.	+	.	Parent=Os08t0132600-02
Chr08	irgsp1_rep	mRNA	1838104	1839670	.	-	.	ID=Os08t0132700-01;Name=Os08t0132700-01;Locus_id=Os08g0132700;Note=Hypothetical protein.;Transcript_evidence=AK111409 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-182-F02;Expression=AK111409;TENOR=Os08t0132700-01;KEGG=Os08t0132700-01
Chr08	irgsp1_rep	five_prime_UTR	1838678	1839670	.	-	.	Parent=Os08t0132700-01
Chr08	irgsp1_rep	CDS	1838339	1838677	.	-	0	Parent=Os08t0132700-01
Chr08	irgsp1_rep	three_prime_UTR	1838104	1838338	.	-	.	Parent=Os08t0132700-01
Chr08	irgsp1_rep	mRNA	1843879	1846124	.	+	.	ID=Os08t0133000-01;Name=Os08t0133000-01;Locus_id=Os08g0133000;Note=Protein of unknown function DUF1637 family protein.;Transcript_evidence=AK061574 (DDBJ%2C Best hit),AK099391 (DDBJ%2C Best hit);ORF_evidence=E6NU47 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: cysteamine dioxygenase activity (GO:0047800);InterPro=Cupin%2C RmlC-type (IPR011051),Cysteamine dioxygenase (IPR012864),RmlC-like jelly roll fold (IPR014710);NIAS_FLcDNA=006-311-G02,J033077B10;Expression=AK061574;TENOR=Os08t0133000-01;KEGG=Os08t0133000-01
Chr08	irgsp1_rep	five_prime_UTR	1843879	1844043	.	+	.	Parent=Os08t0133000-01
Chr08	irgsp1_rep	CDS	1844044	1844215	.	+	0	Parent=Os08t0133000-01
Chr08	irgsp1_rep	CDS	1844379	1844539	.	+	2	Parent=Os08t0133000-01
Chr08	irgsp1_rep	CDS	1844673	1844820	.	+	0	Parent=Os08t0133000-01
Chr08	irgsp1_rep	CDS	1845146	1845346	.	+	2	Parent=Os08t0133000-01
Chr08	irgsp1_rep	CDS	1845645	1845760	.	+	2	Parent=Os08t0133000-01
Chr08	irgsp1_rep	CDS	1845886	1845900	.	+	0	Parent=Os08t0133000-01
Chr08	irgsp1_rep	three_prime_UTR	1845901	1846124	.	+	.	Parent=Os08t0133000-01
Chr08	irgsp1_rep	mRNA	1855105	1856895	.	-	.	ID=Os08t0133200-01;Name=Os08t0133200-01;Locus_id=Os08g0133200;Note=Similar to copine-3.;Transcript_evidence=AK241367 (DDBJ%2C Best hit);ORF_evidence=NP_001147038.1 (RefSeq);InterPro=Copine (IPR010734);NIAS_FLcDNA=J065152O11;TENOR=Os08t0133200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	1856549	1856895	.	-	.	Parent=Os08t0133200-01
Chr08	irgsp1_rep	five_prime_UTR	1856421	1856462	.	-	.	Parent=Os08t0133200-01
Chr08	irgsp1_rep	five_prime_UTR	1856241	1856307	.	-	.	Parent=Os08t0133200-01
Chr08	irgsp1_rep	five_prime_UTR	1856066	1856151	.	-	.	Parent=Os08t0133200-01
Chr08	irgsp1_rep	CDS	1856009	1856065	.	-	0	Parent=Os08t0133200-01
Chr08	irgsp1_rep	CDS	1855394	1855537	.	-	0	Parent=Os08t0133200-01
Chr08	irgsp1_rep	three_prime_UTR	1855105	1855393	.	-	.	Parent=Os08t0133200-01
Chr08	irgsp1_rep	mRNA	1914052	1917166	.	+	.	ID=Os08t0133600-01;Name=Os08t0133600-01;Locus_id=Os08g0133600;Note=Conserved hypothetical protein.;Transcript_evidence=AK073987 (DDBJ%2C Best hit),AK105436 (DDBJ%2C Best hit);ORF_evidence=B8BAH0 (UniProt);NIAS_FLcDNA=J033073K09,001-124-G03;Expression=AK073987;TENOR=Os08t0133600-01;KEGG=Os08t0133600-01
Chr08	irgsp1_rep	five_prime_UTR	1914052	1914167	.	+	.	Parent=Os08t0133600-01
Chr08	irgsp1_rep	five_prime_UTR	1914284	1914298	.	+	.	Parent=Os08t0133600-01
Chr08	irgsp1_rep	CDS	1914299	1914539	.	+	0	Parent=Os08t0133600-01
Chr08	irgsp1_rep	CDS	1914625	1914933	.	+	2	Parent=Os08t0133600-01
Chr08	irgsp1_rep	CDS	1915121	1915338	.	+	2	Parent=Os08t0133600-01
Chr08	irgsp1_rep	CDS	1916466	1917086	.	+	0	Parent=Os08t0133600-01
Chr08	irgsp1_rep	three_prime_UTR	1917087	1917166	.	+	.	Parent=Os08t0133600-01
Chr08	irgsp1_rep	mRNA	1920333	1923505	.	+	.	ID=Os08t0133700-00;Name=Os08t0133700-00;Locus_id=Os08g0133700;Note=Similar to predicted protein.;Transcript_evidence=AK061574 (DDBJ%2C Secondary hit);ORF_evidence=E6NU47 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: cysteamine dioxygenase activity (GO:0047800);InterPro=Cupin%2C RmlC-type (IPR011051),Cysteamine dioxygenase (IPR012864),RmlC-like jelly roll fold (IPR014710);Expression=AK061574;TENOR=Os08t0133700-00;KEGG=Os08t0133700-00
Chr08	irgsp1_rep	five_prime_UTR	1920333	1920498	.	+	.	Parent=Os08t0133700-00
Chr08	irgsp1_rep	CDS	1920499	1920670	.	+	0	Parent=Os08t0133700-00
Chr08	irgsp1_rep	CDS	1920818	1920978	.	+	2	Parent=Os08t0133700-00
Chr08	irgsp1_rep	CDS	1921101	1921248	.	+	0	Parent=Os08t0133700-00
Chr08	irgsp1_rep	CDS	1921565	1921617	.	+	2	Parent=Os08t0133700-00
Chr08	irgsp1_rep	CDS	1922640	1922787	.	+	0	Parent=Os08t0133700-00
Chr08	irgsp1_rep	CDS	1923093	1923208	.	+	2	Parent=Os08t0133700-00
Chr08	irgsp1_rep	CDS	1923313	1923327	.	+	0	Parent=Os08t0133700-00
Chr08	irgsp1_rep	three_prime_UTR	1923328	1923505	.	+	.	Parent=Os08t0133700-00
Chr08	irgsp1_rep	mRNA	1988346	1990818	.	+	.	ID=Os08t0134900-01;Name=Os08t0134900-01;Locus_id=Os08g0134900;Note=Conserved hypothetical protein.;Transcript_evidence=AK066009 (DDBJ%2C Best hit);ORF_evidence=A2YQZ2 (UniProt);NIAS_FLcDNA=J013047E17;Expression=AK066009;TENOR=Os08t0134900-01;KEGG=Os08t0134900-01
Chr08	irgsp1_rep	five_prime_UTR	1988346	1988433	.	+	.	Parent=Os08t0134900-01
Chr08	irgsp1_rep	five_prime_UTR	1988522	1988545	.	+	.	Parent=Os08t0134900-01
Chr08	irgsp1_rep	CDS	1988546	1988723	.	+	0	Parent=Os08t0134900-01
Chr08	irgsp1_rep	CDS	1988931	1989146	.	+	2	Parent=Os08t0134900-01
Chr08	irgsp1_rep	CDS	1989338	1989555	.	+	2	Parent=Os08t0134900-01
Chr08	irgsp1_rep	CDS	1990062	1990685	.	+	0	Parent=Os08t0134900-01
Chr08	irgsp1_rep	three_prime_UTR	1990686	1990818	.	+	.	Parent=Os08t0134900-01
Chr08	irgsp1_rep	mRNA	1994522	1998857	.	-	.	ID=Os08t0135100-01;Name=Os08t0135100-01;Locus_id=Os08g0135100;Note=Similar to Phosphate/phosphoenolpyruvate translocator protein-like.;Transcript_evidence=AK108618 (DDBJ%2C Best hit);ORF_evidence=NP_566487.1 (RefSeq);InterPro=Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=002-147-C04;Expression=AK108618;TENOR=Os08t0135100-01;KEGG=Os08t0135100-01
Chr08	irgsp1_rep	five_prime_UTR	1998828	1998857	.	-	.	Parent=Os08t0135100-01
Chr08	irgsp1_rep	CDS	1998705	1998827	.	-	0	Parent=Os08t0135100-01
Chr08	irgsp1_rep	CDS	1997115	1997222	.	-	0	Parent=Os08t0135100-01
Chr08	irgsp1_rep	CDS	1996904	1996938	.	-	0	Parent=Os08t0135100-01
Chr08	irgsp1_rep	CDS	1996037	1996149	.	-	1	Parent=Os08t0135100-01
Chr08	irgsp1_rep	CDS	1995683	1995944	.	-	2	Parent=Os08t0135100-01
Chr08	irgsp1_rep	CDS	1995333	1995601	.	-	1	Parent=Os08t0135100-01
Chr08	irgsp1_rep	CDS	1995032	1995174	.	-	2	Parent=Os08t0135100-01
Chr08	irgsp1_rep	three_prime_UTR	1994992	1995031	.	-	.	Parent=Os08t0135100-01
Chr08	irgsp1_rep	three_prime_UTR	1994522	1994898	.	-	.	Parent=Os08t0135100-01
Chr08	irgsp1_rep	mRNA	2000026	2000749	.	-	.	ID=Os08t0135300-01;Name=Os08t0135300-01;Locus_id=Os08g0135300;Note=Conserved hypothetical protein.;Transcript_evidence=AK059320 (DDBJ%2C Best hit);ORF_evidence=B9FYY4 (UniProt);NIAS_FLcDNA=001-025-H07;Expression=AK059320;TENOR=Os08t0135300-01;KEGG=Os08t0135300-01
Chr08	irgsp1_rep	five_prime_UTR	2000748	2000749	.	-	.	Parent=Os08t0135300-01
Chr08	irgsp1_rep	CDS	2000610	2000747	.	-	0	Parent=Os08t0135300-01
Chr08	irgsp1_rep	CDS	2000177	2000458	.	-	0	Parent=Os08t0135300-01
Chr08	irgsp1_rep	three_prime_UTR	2000026	2000176	.	-	.	Parent=Os08t0135300-01
Chr08	irgsp1_rep	mRNA	2007908	2011520	.	+	.	ID=Os08t0135400-01;Name=Os08t0135400-01;Locus_id=Os08g0135400;Oryzabase Gene Symbol Synonym(s)=OsRFPHC-2;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPHC-2%2C RING-HC protein 2;Note=Copine domain containing protein.;Transcript_evidence=AK072961 (DDBJ%2C Best hit),AK064276 (DDBJ%2C Best hit);ORF_evidence=NP_565206.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),von Willebrand factor%2C type A (IPR002035),Copine (IPR010734),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J033000G10,002-105-F03;Oryzabase=11787;Expression=AK072961;TENOR=Os08t0135400-01;KEGG=Os08t0135400-01
Chr08	irgsp1_rep	five_prime_UTR	2007908	2008142	.	+	.	Parent=Os08t0135400-01
Chr08	irgsp1_rep	CDS	2008143	2008310	.	+	0	Parent=Os08t0135400-01
Chr08	irgsp1_rep	CDS	2008449	2008533	.	+	0	Parent=Os08t0135400-01
Chr08	irgsp1_rep	CDS	2008700	2008840	.	+	2	Parent=Os08t0135400-01
Chr08	irgsp1_rep	CDS	2008997	2009110	.	+	2	Parent=Os08t0135400-01
Chr08	irgsp1_rep	CDS	2009224	2009321	.	+	2	Parent=Os08t0135400-01
Chr08	irgsp1_rep	CDS	2009425	2009504	.	+	0	Parent=Os08t0135400-01
Chr08	irgsp1_rep	CDS	2009618	2009723	.	+	1	Parent=Os08t0135400-01
Chr08	irgsp1_rep	CDS	2009835	2009962	.	+	0	Parent=Os08t0135400-01
Chr08	irgsp1_rep	CDS	2010755	2010896	.	+	1	Parent=Os08t0135400-01
Chr08	irgsp1_rep	CDS	2010999	2011055	.	+	0	Parent=Os08t0135400-01
Chr08	irgsp1_rep	CDS	2011228	2011314	.	+	0	Parent=Os08t0135400-01
Chr08	irgsp1_rep	three_prime_UTR	2011315	2011520	.	+	.	Parent=Os08t0135400-01
Chr08	irgsp1_rep	mRNA	2012001	2013253	.	+	.	ID=Os08t0135500-01;Name=Os08t0135500-01;Locus_id=Os08g0135500;Note=X8 domain containing protein.;Transcript_evidence=AK109912 (DDBJ%2C Best hit);ORF_evidence=B6SJQ8 (UniProt);InterPro=X8 (IPR012946);NIAS_FLcDNA=002-149-H11;Expression=AK109912;TENOR=Os08t0135500-01;KEGG=Os08t0135500-01
Chr08	irgsp1_rep	five_prime_UTR	2012001	2012110	.	+	.	Parent=Os08t0135500-01
Chr08	irgsp1_rep	CDS	2012111	2012180	.	+	0	Parent=Os08t0135500-01
Chr08	irgsp1_rep	CDS	2012341	2012381	.	+	2	Parent=Os08t0135500-01
Chr08	irgsp1_rep	CDS	2012538	2012787	.	+	0	Parent=Os08t0135500-01
Chr08	irgsp1_rep	CDS	2012880	2012905	.	+	2	Parent=Os08t0135500-01
Chr08	irgsp1_rep	three_prime_UTR	2012906	2013253	.	+	.	Parent=Os08t0135500-01
Chr08	irgsp1_rep	mRNA	2013220	2014724	.	-	.	ID=Os08t0135600-01;Name=Os08t0135600-01;Locus_id=Os08g0135600;Oryzabase Gene Symbol Synonym(s)=OsMED21%2C MED21%2C OsMed21_1%2C Med21_1;Oryzabase Gene Name Synonym(s)=Mediator complex protein OsMED21%2C Mediator 21_1;Note=Similar to predicted protein.;Transcript_evidence=AK242373 (DDBJ%2C Best hit);ORF_evidence=NP_192387.1 (RefSeq);InterPro=Mediator complex%2C subunit Med21 (IPR021384);NIAS_FLcDNA=J080037L24;Oryzabase=18693;TENOR=Os08t0135600-01;KEGG=Os08t0135600-01
Chr08	irgsp1_rep	five_prime_UTR	2014661	2014724	.	-	.	Parent=Os08t0135600-01
Chr08	irgsp1_rep	CDS	2014655	2014660	.	-	0	Parent=Os08t0135600-01
Chr08	irgsp1_rep	CDS	2014461	2014532	.	-	0	Parent=Os08t0135600-01
Chr08	irgsp1_rep	CDS	2014136	2014187	.	-	0	Parent=Os08t0135600-01
Chr08	irgsp1_rep	CDS	2013945	2014021	.	-	2	Parent=Os08t0135600-01
Chr08	irgsp1_rep	three_prime_UTR	2013934	2013944	.	-	.	Parent=Os08t0135600-01
Chr08	irgsp1_rep	three_prime_UTR	2013220	2013464	.	-	.	Parent=Os08t0135600-01
Chr08	irgsp1_rep	mRNA	2019190	2026643	.	+	.	ID=Os08t0135800-01;Name=Os08t0135800-01;Locus_id=Os08g0135800;CGSNL Gene Symbol=C3H55;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 55;Oryzabase Gene Symbol Synonym(s)=OsC3H55;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 55;Note=Zinc finger%2C CCCH-type domain containing protein.;Transcript_evidence=AK100455 (DDBJ%2C Best hit);ORF_evidence=Q6YYC0 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=J023091E18;Oryzabase=8621;Expression=AK100455;TENOR=Os08t0135800-01;KEGG=Os08t0135800-01
Chr08	irgsp1_rep	five_prime_UTR	2019190	2019332	.	+	.	Parent=Os08t0135800-01
Chr08	irgsp1_rep	five_prime_UTR	2019944	2020039	.	+	.	Parent=Os08t0135800-01
Chr08	irgsp1_rep	five_prime_UTR	2022804	2022891	.	+	.	Parent=Os08t0135800-01
Chr08	irgsp1_rep	CDS	2022892	2023445	.	+	0	Parent=Os08t0135800-01
Chr08	irgsp1_rep	CDS	2023736	2026025	.	+	1	Parent=Os08t0135800-01
Chr08	irgsp1_rep	CDS	2026129	2026161	.	+	0	Parent=Os08t0135800-01
Chr08	irgsp1_rep	three_prime_UTR	2026162	2026643	.	+	.	Parent=Os08t0135800-01
Chr08	irgsp1_rep	mRNA	2019203	2021167	.	+	.	ID=Os08t0135800-02;Name=Os08t0135800-02;Locus_id=Os08g0135800;CGSNL Gene Symbol=C3H55;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 55;Oryzabase Gene Symbol Synonym(s)=OsC3H55;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 55;Note=Hypothetical conserved gene.;Transcript_evidence=AK103238 (DDBJ%2C Best hit);ORF_evidence=B9FYY8 (UniProt);NIAS_FLcDNA=J033123G15;Oryzabase=8621;Expression=AK103238;TENOR=Os08t0135800-02;KEGG=Os08t0135800-02
Chr08	irgsp1_rep	CDS	2019203	2019332	.	+	0	Parent=Os08t0135800-02
Chr08	irgsp1_rep	CDS	2019944	2019978	.	+	2	Parent=Os08t0135800-02
Chr08	irgsp1_rep	three_prime_UTR	2019979	2020039	.	+	.	Parent=Os08t0135800-02
Chr08	irgsp1_rep	three_prime_UTR	2020651	2021167	.	+	.	Parent=Os08t0135800-02
Chr08	irgsp1_rep	mRNA	2019203	2021755	.	+	.	ID=Os08t0135800-03;Name=Os08t0135800-03;Locus_id=Os08g0135800;CGSNL Gene Symbol=C3H55;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 55;Oryzabase Gene Symbol Synonym(s)=OsC3H55;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 55;Note=Hypothetical conserved gene.;Transcript_evidence=AK063690 (DDBJ%2C Best hit);ORF_evidence=B9FYY8 (UniProt);NIAS_FLcDNA=001-119-F08;Oryzabase=8621;Expression=AK063690;TENOR=Os08t0135800-03;KEGG=Os08t0135800-03
Chr08	irgsp1_rep	CDS	2019203	2019332	.	+	0	Parent=Os08t0135800-03
Chr08	irgsp1_rep	CDS	2019944	2019978	.	+	2	Parent=Os08t0135800-03
Chr08	irgsp1_rep	three_prime_UTR	2019979	2020039	.	+	.	Parent=Os08t0135800-03
Chr08	irgsp1_rep	three_prime_UTR	2021458	2021755	.	+	.	Parent=Os08t0135800-03
Chr08	irgsp1_rep	mRNA	2024016	2026508	.	+	.	ID=Os08t0135800-04;Name=Os08t0135800-04;Locus_id=Os08g0135800;CGSNL Gene Symbol=C3H55;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 55;Oryzabase Gene Symbol Synonym(s)=OsC3H55;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 55;Note=Hypothetical conserved gene.;Transcript_evidence=AK111729 (DDBJ%2C Best hit);ORF_evidence=Q6YYC0 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=J023038J07;Oryzabase=8621;Expression=AK111729;TENOR=Os08t0135800-04;KEGG=Os08t0135800-04
Chr08	irgsp1_rep	CDS	2024016	2026025	.	+	0	Parent=Os08t0135800-04
Chr08	irgsp1_rep	CDS	2026129	2026161	.	+	0	Parent=Os08t0135800-04
Chr08	irgsp1_rep	three_prime_UTR	2026162	2026508	.	+	.	Parent=Os08t0135800-04
Chr08	irgsp1_rep	mRNA	2029732	2033050	.	+	.	ID=Os08t0135900-01;Name=Os08t0135900-01;Locus_id=Os08g0135900;Oryzabase Gene Symbol Synonym(s)=TS;Oryzabase Gene Name Synonym(s)=tryptophan synthase;Note=Similar to Tryptophan synthase beta chain 1 (EC 4.2.1.20) (Orange pericarp 1) (Fragment).;Transcript_evidence=AK072535 (DDBJ%2C Best hit);ORF_evidence=P43284 (UniProt);GO=Biological Process: tryptophan metabolic process (GO:0006568),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: tryptophan synthase activity (GO:0004834),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent enzyme%2C beta subunit (IPR001926),Tryptophan synthase%2C beta chain%2C conserved site (IPR006653),Tryptophan synthase%2C beta chain (IPR006654),Tryptophan synthase beta chain/beta chain-like (IPR023026);NIAS_FLcDNA=J023133G14;Oryzabase=16776;Expression=AK072535;TENOR=Os08t0135900-01;KEGG=Os08t0135900-01 (EC:4.2.1.20)
Chr08	irgsp1_rep	five_prime_UTR	2029732	2029785	.	+	.	Parent=Os08t0135900-01
Chr08	irgsp1_rep	CDS	2029786	2030130	.	+	0	Parent=Os08t0135900-01
Chr08	irgsp1_rep	CDS	2030829	2031185	.	+	0	Parent=Os08t0135900-01
Chr08	irgsp1_rep	CDS	2031295	2031737	.	+	0	Parent=Os08t0135900-01
Chr08	irgsp1_rep	CDS	2031819	2031913	.	+	1	Parent=Os08t0135900-01
Chr08	irgsp1_rep	CDS	2032646	2032821	.	+	2	Parent=Os08t0135900-01
Chr08	irgsp1_rep	three_prime_UTR	2032822	2033050	.	+	.	Parent=Os08t0135900-01
Chr08	irgsp1_rep	mRNA	2030946	2033050	.	+	.	ID=Os08t0135900-02;Name=Os08t0135900-02;Locus_id=Os08g0135900;Oryzabase Gene Symbol Synonym(s)=TS;Oryzabase Gene Name Synonym(s)=tryptophan synthase;Note=Similar to Tryptophan synthase beta-subunit.;Transcript_evidence=AK060205 (DDBJ%2C Best hit);ORF_evidence=P43283 (UniProt);GO=Biological Process: tryptophan metabolic process (GO:0006568),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: tryptophan synthase activity (GO:0004834),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent enzyme%2C beta subunit (IPR001926),Tryptophan synthase%2C beta chain%2C conserved site (IPR006653),Tryptophan synthase%2C beta chain (IPR006654),Tryptophan synthase beta chain/beta chain-like (IPR023026);NIAS_FLcDNA=001-002-A05;Oryzabase=16776;Expression=AK060205;TENOR=Os08t0135900-02;KEGG=Os08t0135900-02 (EC:4.2.1.20)
Chr08	irgsp1_rep	CDS	2030946	2031185	.	+	0	Parent=Os08t0135900-02
Chr08	irgsp1_rep	CDS	2031295	2031737	.	+	0	Parent=Os08t0135900-02
Chr08	irgsp1_rep	CDS	2031819	2031913	.	+	1	Parent=Os08t0135900-02
Chr08	irgsp1_rep	CDS	2032646	2032821	.	+	2	Parent=Os08t0135900-02
Chr08	irgsp1_rep	three_prime_UTR	2032822	2033050	.	+	.	Parent=Os08t0135900-02
Chr08	irgsp1_rep	mRNA	2031342	2033180	.	+	.	ID=Os08t0135900-03;Name=Os08t0135900-03;Locus_id=Os08g0135900;Oryzabase Gene Symbol Synonym(s)=TS;Oryzabase Gene Name Synonym(s)=tryptophan synthase;Note=Similar to Tryptophan synthase beta-subunit.;Transcript_evidence=AK069187 (DDBJ%2C Best hit);ORF_evidence=P43283 (UniProt);GO=Biological Process: tryptophan metabolic process (GO:0006568),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: tryptophan synthase activity (GO:0004834),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent enzyme%2C beta subunit (IPR001926),Tryptophan synthase%2C beta chain (IPR006654);NIAS_FLcDNA=J023009G22;Oryzabase=16776;Expression=AK069187;TENOR=Os08t0135900-03;KEGG=Os08t0135900-03 (EC:4.2.1.20)
Chr08	irgsp1_rep	five_prime_UTR	2031342	2031342	.	+	.	Parent=Os08t0135900-03
Chr08	irgsp1_rep	CDS	2031343	2031737	.	+	0	Parent=Os08t0135900-03
Chr08	irgsp1_rep	CDS	2031819	2031913	.	+	1	Parent=Os08t0135900-03
Chr08	irgsp1_rep	CDS	2032646	2032821	.	+	2	Parent=Os08t0135900-03
Chr08	irgsp1_rep	three_prime_UTR	2032822	2033180	.	+	.	Parent=Os08t0135900-03
Chr08	irgsp1_rep	mRNA	2031265	2032955	.	-	.	ID=Os08t0136001-00;Name=Os08t0136001-00;Locus_id=Os08g0136001;Note=Hypothetical gene.;Transcript_evidence=BT016988 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0136001-00;KEGG=Os08t0136001-00
Chr08	irgsp1_rep	five_prime_UTR	2032640	2032955	.	-	.	Parent=Os08t0136001-00
Chr08	irgsp1_rep	five_prime_UTR	2031829	2031906	.	-	.	Parent=Os08t0136001-00
Chr08	irgsp1_rep	five_prime_UTR	2031677	2031746	.	-	.	Parent=Os08t0136001-00
Chr08	irgsp1_rep	CDS	2031362	2031676	.	-	0	Parent=Os08t0136001-00
Chr08	irgsp1_rep	three_prime_UTR	2031265	2031361	.	-	.	Parent=Os08t0136001-00
Chr08	irgsp1_rep	mRNA	2033903	2039301	.	-	.	ID=Os08t0136100-01;Name=Os08t0136100-01;Locus_id=Os08g0136100;CGSNL Gene Symbol=ROC7;CGSNL Gene Name=RICE OUTMOST CELL-SPECIFIC GENE 7;Oryzabase Gene Symbol Synonym(s)=Roc7(t)%2C Roc7%2C GL2-7;Oryzabase Gene Name Synonym(s)=Rice outmost cell -specific gene 7(t)%2C Rice outermost cell-specific gene-7%2C Homeobox-leucine zipper protein ROC7%2C Homeodomain transcription factor ROC7%2C HD-ZIP protein ROC7%2C Protein RICE OUTERMOST CELL-SPECIFIC 7%2C GLABRA 2-like homeobox protein 7%2C Rice ooutmost cell-specific gene7;Note=Similar to Roc1.;Transcript_evidence=AK318563 (DDBJ%2C Best hit);ORF_evidence=A3BPF2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),Lipid-binding START (IPR002913),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Homeobox%2C conserved site (IPR017970),START-like domain (IPR023393);NIAS_FLcDNA=J075197C04;Oryzabase=20550;TENOR=Os08t0136100-01;KEGG=Os08t0136100-01
Chr08	irgsp1_rep	five_prime_UTR	2038925	2039301	.	-	.	Parent=Os08t0136100-01
Chr08	irgsp1_rep	CDS	2038811	2038924	.	-	0	Parent=Os08t0136100-01
Chr08	irgsp1_rep	CDS	2037073	2037498	.	-	0	Parent=Os08t0136100-01
Chr08	irgsp1_rep	CDS	2035493	2036950	.	-	0	Parent=Os08t0136100-01
Chr08	irgsp1_rep	CDS	2035045	2035404	.	-	0	Parent=Os08t0136100-01
Chr08	irgsp1_rep	three_prime_UTR	2035004	2035044	.	-	.	Parent=Os08t0136100-01
Chr08	irgsp1_rep	three_prime_UTR	2033903	2034728	.	-	.	Parent=Os08t0136100-01
Chr08	irgsp1_rep	mRNA	2054222	2055830	.	-	.	ID=Os08t0136300-01;Name=Os08t0136300-01;Locus_id=Os08g0136300;Oryzabase Gene Name Synonym(s)=DUF26 domain protein;Note=Similar to (clone wusl1032) mRNA sequence.;Transcript_evidence=AK059618 (DDBJ%2C Best hit);ORF_evidence=Q8H768 (UniProt);InterPro=Gnk2-homologous domain (IPR002902);NIAS_FLcDNA=001-030-G10;Oryzabase=22919;Expression=AK059618;TENOR=Os08t0136300-01;KEGG=Os08t0136300-01
Chr08	irgsp1_rep	five_prime_UTR	2055733	2055830	.	-	.	Parent=Os08t0136300-01
Chr08	irgsp1_rep	CDS	2055359	2055732	.	-	0	Parent=Os08t0136300-01
Chr08	irgsp1_rep	CDS	2054421	2054874	.	-	1	Parent=Os08t0136300-01
Chr08	irgsp1_rep	three_prime_UTR	2054222	2054420	.	-	.	Parent=Os08t0136300-01
Chr08	irgsp1_rep	mRNA	2054424	2055641	.	+	.	ID=Os08t0136366-00;Name=Os08t0136366-00;Locus_id=Os08g0136366;Note=Hypothetical gene.;Transcript_evidence=L14835 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0136366-00;KEGG=Os08t0136366-00
Chr08	irgsp1_rep	five_prime_UTR	2054424	2054641	.	+	.	Parent=Os08t0136366-00
Chr08	irgsp1_rep	CDS	2054642	2054860	.	+	0	Parent=Os08t0136366-00
Chr08	irgsp1_rep	three_prime_UTR	2054861	2054880	.	+	.	Parent=Os08t0136366-00
Chr08	irgsp1_rep	three_prime_UTR	2055364	2055641	.	+	.	Parent=Os08t0136366-00
Chr08	irgsp1_rep	mRNA	2059654	2061243	.	-	.	ID=Os08t0136500-01;Name=Os08t0136500-01;Locus_id=Os08g0136500;Note=Protein of unknown function DUF26 domain containing protein.;Transcript_evidence=AK061187 (DDBJ%2C Best hit);ORF_evidence=Q8H768 (UniProt);InterPro=Gnk2-homologous domain (IPR002902);NIAS_FLcDNA=006-209-E07;Expression=AK061187;TENOR=Os08t0136500-01;KEGG=Os08t0136500-01
Chr08	irgsp1_rep	five_prime_UTR	2061146	2061243	.	-	.	Parent=Os08t0136500-01
Chr08	irgsp1_rep	CDS	2060757	2061145	.	-	0	Parent=Os08t0136500-01
Chr08	irgsp1_rep	CDS	2059912	2060365	.	-	1	Parent=Os08t0136500-01
Chr08	irgsp1_rep	three_prime_UTR	2059654	2059911	.	-	.	Parent=Os08t0136500-01
Chr08	irgsp1_rep	mRNA	2060755	2061630	.	+	.	ID=Os08t0136600-01;Name=Os08t0136600-01;Locus_id=Os08g0136600;Note=Hypothetical protein.;Transcript_evidence=AK111343 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-181-F10;Expression=AK111343;TENOR=Os08t0136600-01;KEGG=Os08t0136600-01
Chr08	irgsp1_rep	five_prime_UTR	2060755	2061032	.	+	.	Parent=Os08t0136600-01
Chr08	irgsp1_rep	CDS	2061033	2061329	.	+	0	Parent=Os08t0136600-01
Chr08	irgsp1_rep	three_prime_UTR	2061330	2061630	.	+	.	Parent=Os08t0136600-01
Chr08	irgsp1_rep	mRNA	2063215	2064741	.	-	.	ID=Os08t0136700-01;Name=Os08t0136700-01;Locus_id=Os08g0136700;Note=Protein of unknown function DUF26 domain containing protein.;Transcript_evidence=AK073888 (DDBJ%2C Best hit);ORF_evidence=O82551 (UniProt);InterPro=Gnk2-homologous domain (IPR002902);NIAS_FLcDNA=J033075I11;Expression=AK073888;TENOR=Os08t0136700-01;KEGG=Os08t0136700-01
Chr08	irgsp1_rep	five_prime_UTR	2064677	2064741	.	-	.	Parent=Os08t0136700-01
Chr08	irgsp1_rep	CDS	2064306	2064676	.	-	0	Parent=Os08t0136700-01
Chr08	irgsp1_rep	CDS	2063480	2063933	.	-	1	Parent=Os08t0136700-01
Chr08	irgsp1_rep	three_prime_UTR	2063215	2063479	.	-	.	Parent=Os08t0136700-01
Chr08	irgsp1_rep	mRNA	2063484	2064637	.	+	.	ID=Os08t0136725-00;Name=Os08t0136725-00;Locus_id=Os08g0136725;Note=Non-protein coding transcript.;Transcript_evidence=L14835 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0136725-00
Chr08	irgsp1_rep	exon	2063484	2063929	.	+	.	Parent=Os08t0136725-00
Chr08	irgsp1_rep	exon	2064301	2064637	.	+	.	Parent=Os08t0136725-00
Chr08	irgsp1_rep	mRNA	2066297	2066918	.	-	.	ID=Os08t0136750-01;Name=Os08t0136750-01;Locus_id=Os08g0136750;Note=Non-protein coding transcript.;Transcript_evidence=AK107939 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-135-A11;TENOR=Os08t0136750-01
Chr08	irgsp1_rep	exon	2066297	2066918	.	-	.	Parent=Os08t0136750-01
Chr08	irgsp1_rep	mRNA	2066433	2067718	.	+	.	ID=Os08t0136800-01;Name=Os08t0136800-01;Locus_id=Os08g0136800;Note=Protein of unknown function DUF26 domain containing protein.;Transcript_evidence=AK063306 (DDBJ%2C Best hit);ORF_evidence=O82551 (UniProt);InterPro=Gnk2-homologous domain (IPR002902);NIAS_FLcDNA=001-113-F10;Expression=AK063306;TENOR=Os08t0136800-01;KEGG=Os08t0136800-01
Chr08	irgsp1_rep	five_prime_UTR	2066433	2066557	.	+	.	Parent=Os08t0136800-01
Chr08	irgsp1_rep	CDS	2066558	2066931	.	+	0	Parent=Os08t0136800-01
Chr08	irgsp1_rep	CDS	2067054	2067510	.	+	1	Parent=Os08t0136800-01
Chr08	irgsp1_rep	three_prime_UTR	2067511	2067718	.	+	.	Parent=Os08t0136800-01
Chr08	irgsp1_rep	mRNA	2072553	2073315	.	+	.	ID=Os08t0137000-00;Name=Os08t0137000-00;Locus_id=Os08g0137000;Note=Conserved hypothetical protein.;Transcript_evidence=EU957461 (DDBJ);ORF_evidence=Q6ZJX2 (UniProt);TENOR=Os08t0137000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	2072553	2072605	.	+	.	Parent=Os08t0137000-00
Chr08	irgsp1_rep	CDS	2072606	2072911	.	+	0	Parent=Os08t0137000-00
Chr08	irgsp1_rep	three_prime_UTR	2072912	2073315	.	+	.	Parent=Os08t0137000-00
Chr08	irgsp1_rep	mRNA	2072459	2073315	.	-	.	ID=Os08t0137050-00;Name=Os08t0137050-00;Locus_id=Os08g0137050;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0001n10 (Wheat FLcDNA);ORF_evidence=Q5W768 (UniProt);TENOR=Os08t0137050-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	2073050	2073315	.	-	.	Parent=Os08t0137050-00
Chr08	irgsp1_rep	CDS	2072459	2073049	.	-	0	Parent=Os08t0137050-00
Chr08	irgsp1_rep	mRNA	2077234	2083272	.	+	.	ID=Os08t0137100-01;Name=Os08t0137100-01;Locus_id=Os08g0137100;RAP-DB Gene Symbol Synonym(s)=FIE2%2C OsFIE2%2C FIE%2C OsWD40-153;RAP-DB Gene Name Synonym(s)=FERTILIZATION-INDEPENDENT ENDOSPERM 2%2C FERTILIZATION-INDEPENDENT ENDOSPERM2%2C Fertilization-Independent Endosperm 2%2C Polycomb protein OsFIE2;CGSNL Gene Symbol=FIE2;CGSNL Gene Name=FERTILIZATION-INDEPENDENT ENDOSPERM 2;Oryzabase Gene Symbol Synonym(s)=OsFIE2%2C FIE%2C OsWD40-153;Oryzabase Gene Name Synonym(s)=FERTILIZATION-INDEPENDENT ENDOSPERM2%2C Fertilization-Independent Endosperm 2%2C Polycomb protein OsFIE2;Note=WD40 Polycomb protein of the PRC2 complex%2C Regulation of vegetative and reproductive development;Transcript_evidence=AK111761;ORF_evidence=Q6ZJX0;GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat (IPR001680),G-protein beta WD-40 repeat (IPR020472),WD40 repeat%2C conserved site (IPR019775);NIAS_FLcDNA=J023058F21;Manual Curation=January 9%2C 2014;Literature_PMID=24020752;Oryzabase=8842;TENOR=Os08t0137100-01;KEGG=Os08t0137100-01
Chr08	irgsp1_rep	five_prime_UTR	2077234	2077603	.	+	.	Parent=Os08t0137100-01
Chr08	irgsp1_rep	five_prime_UTR	2078938	2079109	.	+	.	Parent=Os08t0137100-01
Chr08	irgsp1_rep	CDS	2079110	2079298	.	+	0	Parent=Os08t0137100-01
Chr08	irgsp1_rep	CDS	2079870	2079935	.	+	0	Parent=Os08t0137100-01
Chr08	irgsp1_rep	CDS	2080099	2080221	.	+	0	Parent=Os08t0137100-01
Chr08	irgsp1_rep	CDS	2080899	2080979	.	+	0	Parent=Os08t0137100-01
Chr08	irgsp1_rep	CDS	2081059	2081151	.	+	0	Parent=Os08t0137100-01
Chr08	irgsp1_rep	CDS	2081367	2081442	.	+	0	Parent=Os08t0137100-01
Chr08	irgsp1_rep	CDS	2081526	2081605	.	+	2	Parent=Os08t0137100-01
Chr08	irgsp1_rep	CDS	2081703	2081774	.	+	0	Parent=Os08t0137100-01
Chr08	irgsp1_rep	CDS	2081897	2081956	.	+	0	Parent=Os08t0137100-01
Chr08	irgsp1_rep	CDS	2082119	2082215	.	+	0	Parent=Os08t0137100-01
Chr08	irgsp1_rep	CDS	2082481	2082544	.	+	2	Parent=Os08t0137100-01
Chr08	irgsp1_rep	CDS	2082647	2082706	.	+	1	Parent=Os08t0137100-01
Chr08	irgsp1_rep	CDS	2082883	2082952	.	+	1	Parent=Os08t0137100-01
Chr08	irgsp1_rep	three_prime_UTR	2082953	2083272	.	+	.	Parent=Os08t0137100-01
Chr08	irgsp1_rep	mRNA	2084611	2093678	.	+	.	ID=Os08t0137200-01;Name=Os08t0137200-01;Locus_id=Os08g0137200;Note=Actin/actin-like family protein.;Transcript_evidence=AK065561 (DDBJ%2C Best hit),AK101582 (DDBJ%2C Best hit);ORF_evidence=B7ERY7 (UniProt);InterPro=Actin-like (IPR004000);NIAS_FLcDNA=J013033I11,J033050O03;TENOR=Os08t0137200-01
Chr08	irgsp1_rep	five_prime_UTR	2084611	2084723	.	+	.	Parent=Os08t0137200-01
Chr08	irgsp1_rep	CDS	2084724	2084736	.	+	0	Parent=Os08t0137200-01
Chr08	irgsp1_rep	CDS	2084831	2084922	.	+	2	Parent=Os08t0137200-01
Chr08	irgsp1_rep	CDS	2086268	2086441	.	+	0	Parent=Os08t0137200-01
Chr08	irgsp1_rep	CDS	2086528	2086601	.	+	0	Parent=Os08t0137200-01
Chr08	irgsp1_rep	CDS	2087191	2087271	.	+	1	Parent=Os08t0137200-01
Chr08	irgsp1_rep	CDS	2087650	2087710	.	+	1	Parent=Os08t0137200-01
Chr08	irgsp1_rep	CDS	2087781	2087830	.	+	0	Parent=Os08t0137200-01
Chr08	irgsp1_rep	CDS	2088622	2088676	.	+	1	Parent=Os08t0137200-01
Chr08	irgsp1_rep	CDS	2088943	2089020	.	+	0	Parent=Os08t0137200-01
Chr08	irgsp1_rep	CDS	2089101	2089154	.	+	0	Parent=Os08t0137200-01
Chr08	irgsp1_rep	CDS	2090047	2090100	.	+	0	Parent=Os08t0137200-01
Chr08	irgsp1_rep	CDS	2090190	2090250	.	+	0	Parent=Os08t0137200-01
Chr08	irgsp1_rep	CDS	2090573	2090624	.	+	2	Parent=Os08t0137200-01
Chr08	irgsp1_rep	CDS	2091462	2091528	.	+	1	Parent=Os08t0137200-01
Chr08	irgsp1_rep	CDS	2091737	2091796	.	+	0	Parent=Os08t0137200-01
Chr08	irgsp1_rep	CDS	2091890	2091952	.	+	0	Parent=Os08t0137200-01
Chr08	irgsp1_rep	CDS	2092096	2092158	.	+	0	Parent=Os08t0137200-01
Chr08	irgsp1_rep	CDS	2092681	2092745	.	+	0	Parent=Os08t0137200-01
Chr08	irgsp1_rep	CDS	2092964	2093032	.	+	1	Parent=Os08t0137200-01
Chr08	irgsp1_rep	CDS	2093118	2093163	.	+	1	Parent=Os08t0137200-01
Chr08	irgsp1_rep	three_prime_UTR	2093164	2093678	.	+	.	Parent=Os08t0137200-01
Chr08	irgsp1_rep	mRNA	2084830	2093052	.	-	.	ID=Os08t0137225-00;Name=Os08t0137225-00;Locus_id=Os08g0137225;Note=Hypothetical protein.;Transcript_evidence=tplb0059k01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0137225-00
Chr08	irgsp1_rep	five_prime_UTR	2092985	2093052	.	-	.	Parent=Os08t0137225-00
Chr08	irgsp1_rep	CDS	2092961	2092984	.	-	0	Parent=Os08t0137225-00
Chr08	irgsp1_rep	CDS	2092666	2092742	.	-	0	Parent=Os08t0137225-00
Chr08	irgsp1_rep	CDS	2092081	2092152	.	-	1	Parent=Os08t0137225-00
Chr08	irgsp1_rep	CDS	2091886	2091937	.	-	1	Parent=Os08t0137225-00
Chr08	irgsp1_rep	three_prime_UTR	2091819	2091885	.	-	.	Parent=Os08t0137225-00
Chr08	irgsp1_rep	three_prime_UTR	2091390	2091523	.	-	.	Parent=Os08t0137225-00
Chr08	irgsp1_rep	three_prime_UTR	2090188	2090242	.	-	.	Parent=Os08t0137225-00
Chr08	irgsp1_rep	three_prime_UTR	2090028	2090093	.	-	.	Parent=Os08t0137225-00
Chr08	irgsp1_rep	three_prime_UTR	2088916	2089055	.	-	.	Parent=Os08t0137225-00
Chr08	irgsp1_rep	three_prime_UTR	2087781	2087865	.	-	.	Parent=Os08t0137225-00
Chr08	irgsp1_rep	three_prime_UTR	2087650	2087710	.	-	.	Parent=Os08t0137225-00
Chr08	irgsp1_rep	three_prime_UTR	2087184	2087271	.	-	.	Parent=Os08t0137225-00
Chr08	irgsp1_rep	three_prime_UTR	2086526	2086594	.	-	.	Parent=Os08t0137225-00
Chr08	irgsp1_rep	three_prime_UTR	2086267	2086439	.	-	.	Parent=Os08t0137225-00
Chr08	irgsp1_rep	three_prime_UTR	2084830	2084921	.	-	.	Parent=Os08t0137225-00
Chr08	irgsp1_rep	mRNA	2095644	2100604	.	+	.	ID=Os08t0137250-01;Name=Os08t0137250-01;Locus_id=Os08g0137250;RAP-DB Gene Symbol Synonym(s)=FIE1%2C OsFIE1%2C OsWD40-154%2C OsEnS-116;RAP-DB Gene Name Synonym(s)=FERTILIZATION-INDEPENDENT ENDOSPERM 1%2C FERTILIZATION-INDEPENDENT ENDOSPERM1%2C Fertilization-Independent Endosperm 1%2C dwarf and flower aberrant mutant%2C endosperm-specific gene 116;CGSNL Gene Symbol=FIE1;CGSNL Gene Name=FERTILIZATION-INDEPENDENT ENDOSPERM 1;Oryzabase Gene Symbol Synonym(s)=OsFIE1%2C OsWD40-154%2C OsEnS-116%2C OsFIE1/OsWD40-154%2C WD40-154;Oryzabase Gene Name Synonym(s)=FERTILIZATION-INDEPENDENT ENDOSPERM1%2C Fertilization-Independent Endosperm 1%2C dwarf and flower aberrant mutant%2C endosperm-specific gene 116;Note=Esc-like core component of the polycomb repressive complex 2%2C Seed size regulation under heat stress;Transcript_evidence=AK242200;ORF_evidence=Q6ZJW8;GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat (IPR001680),G-protein beta WD-40 repeat (IPR020472),WD40 repeat%2C conserved site (IPR019775);NIAS_FLcDNA=J075166M12;Manual Curation=May 9%2C 2014;Literature_PMID=24590858,23150632;Oryzabase=8841;TENOR=Os08t0137250-01;KEGG=Os08t0137250-01
Chr08	irgsp1_rep	five_prime_UTR	2095644	2095726	.	+	.	Parent=Os08t0137250-01
Chr08	irgsp1_rep	five_prime_UTR	2095848	2095886	.	+	.	Parent=Os08t0137250-01
Chr08	irgsp1_rep	CDS	2095887	2095927	.	+	0	Parent=Os08t0137250-01
Chr08	irgsp1_rep	CDS	2096040	2096433	.	+	1	Parent=Os08t0137250-01
Chr08	irgsp1_rep	CDS	2097141	2097206	.	+	0	Parent=Os08t0137250-01
Chr08	irgsp1_rep	CDS	2097411	2097533	.	+	0	Parent=Os08t0137250-01
Chr08	irgsp1_rep	CDS	2097949	2098029	.	+	0	Parent=Os08t0137250-01
Chr08	irgsp1_rep	CDS	2098109	2098201	.	+	0	Parent=Os08t0137250-01
Chr08	irgsp1_rep	CDS	2098447	2098522	.	+	0	Parent=Os08t0137250-01
Chr08	irgsp1_rep	CDS	2098599	2098678	.	+	2	Parent=Os08t0137250-01
Chr08	irgsp1_rep	CDS	2098777	2098848	.	+	0	Parent=Os08t0137250-01
Chr08	irgsp1_rep	CDS	2099281	2099340	.	+	0	Parent=Os08t0137250-01
Chr08	irgsp1_rep	CDS	2099521	2099617	.	+	0	Parent=Os08t0137250-01
Chr08	irgsp1_rep	CDS	2099842	2099905	.	+	2	Parent=Os08t0137250-01
Chr08	irgsp1_rep	CDS	2100050	2100109	.	+	1	Parent=Os08t0137250-01
Chr08	irgsp1_rep	CDS	2100286	2100379	.	+	1	Parent=Os08t0137250-01
Chr08	irgsp1_rep	three_prime_UTR	2100380	2100604	.	+	.	Parent=Os08t0137250-01
Chr08	irgsp1_rep	mRNA	2108318	2112027	.	+	.	ID=Os08t0137300-01;Name=Os08t0137300-01;Locus_id=Os08g0137300;Note=Protein of unknown function DUF604 family protein.;Transcript_evidence=AK120060 (DDBJ%2C Best hit);ORF_evidence=NP_193259.2 (RefSeq);InterPro=Protein of unknown function DUF604 (IPR006740);NIAS_FLcDNA=J013001G01;Expression=AK120060;TENOR=Os08t0137300-01;KEGG=Os08t0137300-01
Chr08	irgsp1_rep	five_prime_UTR	2108318	2108387	.	+	.	Parent=Os08t0137300-01
Chr08	irgsp1_rep	CDS	2108388	2109227	.	+	0	Parent=Os08t0137300-01
Chr08	irgsp1_rep	CDS	2110552	2111085	.	+	0	Parent=Os08t0137300-01
Chr08	irgsp1_rep	CDS	2111182	2111289	.	+	0	Parent=Os08t0137300-01
Chr08	irgsp1_rep	three_prime_UTR	2111290	2112027	.	+	.	Parent=Os08t0137300-01
Chr08	irgsp1_rep	mRNA	2108370	2110792	.	-	.	ID=Os08t0137350-00;Name=Os08t0137350-00;Locus_id=Os08g0137350;Note=Hypothetical protein.;Transcript_evidence=tplb0043c01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0137350-00
Chr08	irgsp1_rep	five_prime_UTR	2110558	2110792	.	-	.	Parent=Os08t0137350-00
Chr08	irgsp1_rep	five_prime_UTR	2109147	2109232	.	-	.	Parent=Os08t0137350-00
Chr08	irgsp1_rep	CDS	2108370	2109146	.	-	0	Parent=Os08t0137350-00
Chr08	irgsp1_rep	mRNA	2115685	2117035	.	+	.	ID=Os08t0137400-01;Name=Os08t0137400-01;Locus_id=Os08g0137400;RAP-DB Gene Symbol Synonym(s)=OsUCL23;CGSNL Gene Symbol=UCL23;CGSNL Gene Name=UCLACYANIN-LIKE PROTEIN 23;Oryzabase Gene Symbol Synonym(s)=OsUCL23;Oryzabase Gene Name Synonym(s)=uclacyanin-like protein 23;Note=A member of the uclacyanin family%2C Target of OsmiR528%2C Regulation of pollen intine development;Transcript_evidence=AK066535;ORF_evidence=Q0J845;GO=Molecular Function: electron transfer activity (GO:0009055);InterPro=Cupredoxin (IPR008972),Phytocyanin domain (IPR003245);NIAS_FLcDNA=J013068C11;Manual Curation=December 27%2C 2019;Literature_PMID=31871204;Oryzabase=9772;Expression=AK066535;TENOR=Os08t0137400-01;KEGG=Os08t0137400-01;Subcellular location=prevacuolar compartment (PVC) (GO:0005770), multivesicular body (GO:0005771)
Chr08	irgsp1_rep	five_prime_UTR	2115685	2115948	.	+	.	Parent=Os08t0137400-01
Chr08	irgsp1_rep	CDS	2115949	2116147	.	+	0	Parent=Os08t0137400-01
Chr08	irgsp1_rep	CDS	2116585	2116910	.	+	2	Parent=Os08t0137400-01
Chr08	irgsp1_rep	three_prime_UTR	2116911	2117035	.	+	.	Parent=Os08t0137400-01
Chr08	irgsp1_rep	mRNA	2115858	2117008	.	+	.	ID=Os08t0137400-02;Name=Os08t0137400-02;Locus_id=Os08g0137400;CGSNL Gene Symbol=UCL23;CGSNL Gene Name=UCLACYANIN-LIKE PROTEIN 23;Oryzabase Gene Symbol Synonym(s)=OsUCL23;Oryzabase Gene Name Synonym(s)=uclacyanin-like protein 23;Note=Cupredoxin domain containing protein.;Transcript_evidence=AK120571 (DDBJ%2C Best hit);ORF_evidence=NP_001149663.1 (RefSeq);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);NIAS_FLcDNA=J013134F16;Oryzabase=9772;Expression=AK120571;TENOR=Os08t0137400-02;KEGG=Os08t0137400-02
Chr08	irgsp1_rep	five_prime_UTR	2115858	2115948	.	+	.	Parent=Os08t0137400-02
Chr08	irgsp1_rep	CDS	2115949	2116147	.	+	0	Parent=Os08t0137400-02
Chr08	irgsp1_rep	CDS	2116585	2116910	.	+	2	Parent=Os08t0137400-02
Chr08	irgsp1_rep	three_prime_UTR	2116911	2117008	.	+	.	Parent=Os08t0137400-02
Chr08	irgsp1_rep	mRNA	2127064	2128997	.	-	.	ID=Os08t0137600-00;Name=Os08t0137600-00;Locus_id=Os08g0137600;Note=Hypothetical protein.;Transcript_evidence=CT828175 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os08t0137600-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	2128997	2128997	.	-	.	Parent=Os08t0137600-00
Chr08	irgsp1_rep	CDS	2128951	2128996	.	-	0	Parent=Os08t0137600-00
Chr08	irgsp1_rep	CDS	2128674	2128937	.	-	2	Parent=Os08t0137600-00
Chr08	irgsp1_rep	CDS	2128537	2128604	.	-	2	Parent=Os08t0137600-00
Chr08	irgsp1_rep	three_prime_UTR	2128470	2128536	.	-	.	Parent=Os08t0137600-00
Chr08	irgsp1_rep	three_prime_UTR	2127627	2127750	.	-	.	Parent=Os08t0137600-00
Chr08	irgsp1_rep	three_prime_UTR	2127064	2127467	.	-	.	Parent=Os08t0137600-00
Chr08	irgsp1_rep	mRNA	2129613	2130595	.	+	.	ID=Os08t0137800-01;Name=Os08t0137800-01;Locus_id=Os08g0137800;CGSNL Gene Symbol=UCL24;CGSNL Gene Name=UCLACYANIN-LIKE PROTEIN 24;Oryzabase Gene Symbol Synonym(s)=OsUCL24;Oryzabase Gene Name Synonym(s)=uclacyanin-like protein 24;Note=Cupredoxin domain containing protein.;Transcript_evidence=AK063041 (DDBJ%2C Best hit);ORF_evidence=NP_001152010.1 (RefSeq);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);NIAS_FLcDNA=001-110-D06;Oryzabase=9773;Expression=AK063041;TENOR=Os08t0137800-01;KEGG=Os08t0137800-01
Chr08	irgsp1_rep	five_prime_UTR	2129613	2129727	.	+	.	Parent=Os08t0137800-01
Chr08	irgsp1_rep	CDS	2129728	2129899	.	+	0	Parent=Os08t0137800-01
Chr08	irgsp1_rep	CDS	2130014	2130414	.	+	2	Parent=Os08t0137800-01
Chr08	irgsp1_rep	three_prime_UTR	2130415	2130595	.	+	.	Parent=Os08t0137800-01
Chr08	irgsp1_rep	mRNA	2133669	2134479	.	+	.	ID=Os08t0137900-01;Name=Os08t0137900-01;Locus_id=Os08g0137900;CGSNL Gene Symbol=UCL25;CGSNL Gene Name=UCLACYANIN-LIKE PROTEIN 25;Oryzabase Gene Symbol Synonym(s)=OsUCL25;Oryzabase Gene Name Synonym(s)=uclacyanin-like protein 25;Note=Similar to Chemocyanin precursor (Basic blue protein) (Plantacyanin).;Transcript_evidence=AK243320 (DDBJ%2C Best hit);ORF_evidence=NP_001152010.1 (RefSeq);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Blue (type 1) copper domain (IPR000923),Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);NIAS_FLcDNA=J100056P14;Oryzabase=9774;TENOR=Os08t0137900-01;KEGG=Os08t0137900-01
Chr08	irgsp1_rep	five_prime_UTR	2133669	2133739	.	+	.	Parent=Os08t0137900-01
Chr08	irgsp1_rep	CDS	2133740	2134306	.	+	0	Parent=Os08t0137900-01
Chr08	irgsp1_rep	three_prime_UTR	2134307	2134479	.	+	.	Parent=Os08t0137900-01
Chr08	irgsp1_rep	mRNA	2137494	2138081	.	+	.	ID=Os08t0138100-00;Name=Os08t0138100-00;Locus_id=Os08g0138100;CGSNL Gene Symbol=UCL26;CGSNL Gene Name=UCLACYANIN-LIKE PROTEIN 26;Oryzabase Gene Symbol Synonym(s)=OsUCL26;Oryzabase Gene Name Synonym(s)=uclacyanin-like protein 26;Note=Similar to blue copper protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001152010.1 (RefSeq);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Blue (type 1) copper domain (IPR000923),Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);Oryzabase=9775;TENOR=Os08t0138100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	2137494	2138081	.	+	0	Parent=Os08t0138100-00
Chr08	irgsp1_rep	mRNA	2140382	2140954	.	+	.	ID=Os08t0138200-00;Name=Os08t0138200-00;Locus_id=Os08g0138200;CGSNL Gene Symbol=UCL27;CGSNL Gene Name=UCLACYANIN-LIKE PROTEIN 27;Oryzabase Gene Symbol Synonym(s)=OsUCL27;Oryzabase Gene Name Synonym(s)=uclacyanin-like protein 27;Note=Similar to blue copper protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001060958.2 (RefSeq);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Blue (type 1) copper domain (IPR000923),Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);Oryzabase=9776;TENOR=Os08t0138200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	2140382	2140954	.	+	0	Parent=Os08t0138200-00
Chr08	irgsp1_rep	mRNA	2148023	2148847	.	+	.	ID=Os08t0138400-00;Name=Os08t0138400-00;Locus_id=Os08g0138400;CGSNL Gene Symbol=UCL28;CGSNL Gene Name=UCLACYANIN-LIKE PROTEIN 28;Oryzabase Gene Symbol Synonym(s)=OsUCL28;Oryzabase Gene Name Synonym(s)=uclacyanin-like protein 28;Note=Cupredoxin domain containing protein.;Transcript_evidence=AF031195 (DDBJ);ORF_evidence=NP_001152010.1 (RefSeq);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Blue (type 1) copper domain (IPR000923),Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);Oryzabase=9777;TENOR=Os08t0138400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	2148023	2148179	.	+	0	Parent=Os08t0138400-00
Chr08	irgsp1_rep	CDS	2148377	2148792	.	+	2	Parent=Os08t0138400-00
Chr08	irgsp1_rep	three_prime_UTR	2148793	2148847	.	+	.	Parent=Os08t0138400-00
Chr08	irgsp1_rep	mRNA	2148965	2151526	.	-	.	ID=Os08t0138500-01;Name=Os08t0138500-01;Locus_id=Os08g0138500;RAP-DB Gene Symbol Synonym(s)=OsPRI1;RAP-DB Gene Name Synonym(s)=POSITIVE REGULATOR OF IRON HOMEOSTASIS1;CGSNL Gene Symbol=BHLH60;CGSNL Gene Name=BASIC HELIX-LOOP-HELIX PROTEIN 60;Oryzabase Gene Symbol Synonym(s)=OsbHLH060%2C bHLH060%2C bHLH60%2C OsPRI1%2C PRI1%2C OsbHLH115%2C bHLH115;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 060%2C POSITIVE REGULATOR OF IRON HOMEOSTASIS1%2C POSITIVE REGULATOR OF IRON HOMEOSTASIS 1;Note=bHLH transcription factor%2C Regulation of iron homeostasis;Transcript_evidence=AK102951,HQ858852;ORF_evidence=Q6ZKI8;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);NIAS_FLcDNA=J033115D14;Manual Curation=September 4%2C 2017;Literature_PMID=28751317;Oryzabase=15350;Expression=AK102951;TENOR=Os08t0138500-01;KEGG=Os08t0138500-01;Subcellular location=nucleus (GO:0005634)
Chr08	irgsp1_rep	five_prime_UTR	2151443	2151526	.	-	.	Parent=Os08t0138500-01
Chr08	irgsp1_rep	CDS	2151285	2151442	.	-	0	Parent=Os08t0138500-01
Chr08	irgsp1_rep	CDS	2150441	2150506	.	-	1	Parent=Os08t0138500-01
Chr08	irgsp1_rep	CDS	2150259	2150336	.	-	1	Parent=Os08t0138500-01
Chr08	irgsp1_rep	CDS	2150011	2150173	.	-	1	Parent=Os08t0138500-01
Chr08	irgsp1_rep	CDS	2149200	2149496	.	-	0	Parent=Os08t0138500-01
Chr08	irgsp1_rep	three_prime_UTR	2148965	2149199	.	-	.	Parent=Os08t0138500-01
Chr08	irgsp1_rep	mRNA	2154469	2158989	.	+	.	ID=Os08t0138600-01;Name=Os08t0138600-01;Locus_id=Os08g0138600;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK120206 (DDBJ%2C Best hit);ORF_evidence=B8BAL9 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013038B04;Expression=AK120206;TENOR=Os08t0138600-01;KEGG=Os08t0138600-01
Chr08	irgsp1_rep	five_prime_UTR	2154469	2154598	.	+	.	Parent=Os08t0138600-01
Chr08	irgsp1_rep	CDS	2154599	2156671	.	+	0	Parent=Os08t0138600-01
Chr08	irgsp1_rep	three_prime_UTR	2156672	2156675	.	+	.	Parent=Os08t0138600-01
Chr08	irgsp1_rep	three_prime_UTR	2157079	2157191	.	+	.	Parent=Os08t0138600-01
Chr08	irgsp1_rep	three_prime_UTR	2157444	2157936	.	+	.	Parent=Os08t0138600-01
Chr08	irgsp1_rep	three_prime_UTR	2158235	2158440	.	+	.	Parent=Os08t0138600-01
Chr08	irgsp1_rep	three_prime_UTR	2158646	2158989	.	+	.	Parent=Os08t0138600-01
Chr08	irgsp1_rep	mRNA	2159517	2162918	.	-	.	ID=Os08t0138700-01;Name=Os08t0138700-01;Locus_id=Os08g0138700;CGSNL Gene Symbol=RLCK245;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 245;Oryzabase Gene Symbol Synonym(s)=OsRLCK245%2C PTK12%2C OsPTK12;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 245%2C Protein Tyrosine Kinase 12;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK240957 (DDBJ%2C Best hit);ORF_evidence=C6ZRY5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J065045C12;Oryzabase=18937;TENOR=Os08t0138700-01;KEGG=Os08t0138700-01
Chr08	irgsp1_rep	five_prime_UTR	2162796	2162918	.	-	.	Parent=Os08t0138700-01
Chr08	irgsp1_rep	CDS	2162473	2162795	.	-	0	Parent=Os08t0138700-01
Chr08	irgsp1_rep	CDS	2161243	2161396	.	-	1	Parent=Os08t0138700-01
Chr08	irgsp1_rep	CDS	2161048	2161174	.	-	0	Parent=Os08t0138700-01
Chr08	irgsp1_rep	CDS	2160858	2160943	.	-	2	Parent=Os08t0138700-01
Chr08	irgsp1_rep	CDS	2160702	2160773	.	-	0	Parent=Os08t0138700-01
Chr08	irgsp1_rep	CDS	2160239	2160442	.	-	0	Parent=Os08t0138700-01
Chr08	irgsp1_rep	CDS	2159765	2160103	.	-	0	Parent=Os08t0138700-01
Chr08	irgsp1_rep	three_prime_UTR	2159517	2159764	.	-	.	Parent=Os08t0138700-01
Chr08	irgsp1_rep	mRNA	2170450	2171256	.	-	.	ID=Os08t0138900-01;Name=Os08t0138900-01;Locus_id=Os08g0138900;Note=Conserved hypothetical protein.;Transcript_evidence=AK107842 (DDBJ%2C Best hit);ORF_evidence=B8BAM0 (UniProt);NIAS_FLcDNA=002-133-H11;Expression=AK107842;TENOR=Os08t0138900-01;KEGG=Os08t0138900-01
Chr08	irgsp1_rep	five_prime_UTR	2171196	2171256	.	-	.	Parent=Os08t0138900-01
Chr08	irgsp1_rep	CDS	2170882	2171195	.	-	0	Parent=Os08t0138900-01
Chr08	irgsp1_rep	CDS	2170707	2170764	.	-	1	Parent=Os08t0138900-01
Chr08	irgsp1_rep	three_prime_UTR	2170450	2170706	.	-	.	Parent=Os08t0138900-01
Chr08	irgsp1_rep	mRNA	2173552	2177048	.	-	.	ID=Os08t0139000-01;Name=Os08t0139000-01;Locus_id=Os08g0139000;Note=Similar to nucleolin.;Transcript_evidence=AK070704 (DDBJ%2C Best hit);ORF_evidence=B6T5W5 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023056N10;Expression=AK070704;TENOR=Os08t0139000-01;KEGG=Os08t0139000-01
Chr08	irgsp1_rep	five_prime_UTR	2177010	2177048	.	-	.	Parent=Os08t0139000-01
Chr08	irgsp1_rep	CDS	2176886	2177009	.	-	0	Parent=Os08t0139000-01
Chr08	irgsp1_rep	CDS	2175880	2175948	.	-	2	Parent=Os08t0139000-01
Chr08	irgsp1_rep	CDS	2175651	2175793	.	-	2	Parent=Os08t0139000-01
Chr08	irgsp1_rep	three_prime_UTR	2173552	2175650	.	-	.	Parent=Os08t0139000-01
Chr08	irgsp1_rep	mRNA	2173729	2177047	.	-	.	ID=Os08t0139000-02;Name=Os08t0139000-02;Locus_id=Os08g0139000;Note=Similar to RNA-binding glycine rich protein (RGP-2).;Transcript_evidence=AK119802 (DDBJ%2C Best hit);ORF_evidence=B6T5W5 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=002-176-D03;Expression=AK119802;TENOR=Os08t0139000-02;KEGG=Os08t0139000-02
Chr08	irgsp1_rep	five_prime_UTR	2177010	2177047	.	-	.	Parent=Os08t0139000-02
Chr08	irgsp1_rep	CDS	2176886	2177009	.	-	0	Parent=Os08t0139000-02
Chr08	irgsp1_rep	CDS	2175880	2175948	.	-	2	Parent=Os08t0139000-02
Chr08	irgsp1_rep	CDS	2175687	2175793	.	-	2	Parent=Os08t0139000-02
Chr08	irgsp1_rep	CDS	2173983	2174108	.	-	0	Parent=Os08t0139000-02
Chr08	irgsp1_rep	three_prime_UTR	2173729	2173982	.	-	.	Parent=Os08t0139000-02
Chr08	irgsp1_rep	mRNA	2178165	2180179	.	-	.	ID=Os08t0139100-01;Name=Os08t0139100-01;Locus_id=Os08g0139100;CGSNL Gene Symbol=MORF9;CGSNL Gene Name=MULTIPLE ORGANELLAR RNA EDITING FACTOR 9;Oryzabase Gene Symbol Synonym(s)=OsMORF9;Oryzabase Gene Name Synonym(s)=multiple organellar RNA editing factor 9;Note=Similar to DAG protein%2C chloroplast precursor.;Transcript_evidence=AK099590 (DDBJ%2C Best hit),AK061429 (DDBJ%2C Best hit),AK104727 (DDBJ%2C Best hit);ORF_evidence=NP_001151266.1 (RefSeq);InterPro=Peptidase S8%2C subtilisin-related (IPR015500);NIAS_FLcDNA=J013043H11,006-306-H03,001-038-B10;Oryzabase=22397;Expression=AK099590;TENOR=Os08t0139100-01;KEGG=Os08t0139100-01
Chr08	irgsp1_rep	five_prime_UTR	2180136	2180179	.	-	.	Parent=Os08t0139100-01
Chr08	irgsp1_rep	CDS	2179786	2180135	.	-	0	Parent=Os08t0139100-01
Chr08	irgsp1_rep	CDS	2179134	2179231	.	-	1	Parent=Os08t0139100-01
Chr08	irgsp1_rep	CDS	2178976	2179041	.	-	2	Parent=Os08t0139100-01
Chr08	irgsp1_rep	CDS	2178707	2178882	.	-	2	Parent=Os08t0139100-01
Chr08	irgsp1_rep	three_prime_UTR	2178706	2178706	.	-	.	Parent=Os08t0139100-01
Chr08	irgsp1_rep	three_prime_UTR	2178165	2178634	.	-	.	Parent=Os08t0139100-01
Chr08	irgsp1_rep	mRNA	2182870	2184768	.	-	.	ID=Os08t0139200-01;Name=Os08t0139200-01;Locus_id=Os08g0139200;Note=Similar to F-171-b1_1 (Fragment).;Transcript_evidence=AK070351 (DDBJ%2C Best hit);ORF_evidence=D2D309 (UniProt);GO=Biological Process: negative regulation of transcription%2C DNA-dependent (GO:0045892),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=NADPH-dependent FMN reductase (IPR005025),Flavodoxin/nitric oxide synthase (IPR008254),Flavoprotein WrbA (IPR010089);NIAS_FLcDNA=J023054M12;Expression=AK070351;TENOR=Os08t0139200-01;KEGG=Os08t0139200-01
Chr08	irgsp1_rep	five_prime_UTR	2184709	2184768	.	-	.	Parent=Os08t0139200-01
Chr08	irgsp1_rep	CDS	2184686	2184708	.	-	0	Parent=Os08t0139200-01
Chr08	irgsp1_rep	CDS	2183832	2183925	.	-	1	Parent=Os08t0139200-01
Chr08	irgsp1_rep	CDS	2183477	2183739	.	-	0	Parent=Os08t0139200-01
Chr08	irgsp1_rep	CDS	2183031	2183262	.	-	1	Parent=Os08t0139200-01
Chr08	irgsp1_rep	three_prime_UTR	2182870	2183030	.	-	.	Parent=Os08t0139200-01
Chr08	irgsp1_rep	mRNA	2183029	2183925	.	+	.	ID=Os08t0139300-00;Name=Os08t0139300-00;Locus_id=Os08g0139300;Note=Non-protein coding transcript.;Transcript_evidence=BT017374 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0139300-00
Chr08	irgsp1_rep	exon	2183029	2183256	.	+	.	Parent=Os08t0139300-00
Chr08	irgsp1_rep	exon	2183469	2183742	.	+	.	Parent=Os08t0139300-00
Chr08	irgsp1_rep	exon	2183841	2183925	.	+	.	Parent=Os08t0139300-00
Chr08	irgsp1_rep	mRNA	2195441	2195872	.	-	.	ID=Os08t0139400-01;Name=Os08t0139400-01;Locus_id=Os08g0139400;Oryzabase Gene Symbol Synonym(s)=OsPUB30;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 30%2C U-box protein 30;Note=Non-protein coding transcript.;Transcript_evidence=AK101460 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J033040E12;Oryzabase=17822;TENOR=Os08t0139400-01
Chr08	irgsp1_rep	exon	2195441	2195872	.	-	.	Parent=Os08t0139400-01
Chr08	irgsp1_rep	mRNA	2203447	2204315	.	-	.	ID=Os08t0139500-00;Name=Os08t0139500-00;Locus_id=Os08g0139500;Note=Similar to Protein LRP16.;Transcript_evidence=EU960942 (DDBJ);ORF_evidence=B6T7H7 (UniProt);InterPro=Appr-1-p processing (IPR002589);TENOR=Os08t0139500-00;KEGG=Os08t0139500-00
Chr08	irgsp1_rep	five_prime_UTR	2204306	2204315	.	-	.	Parent=Os08t0139500-00
Chr08	irgsp1_rep	CDS	2204000	2204305	.	-	0	Parent=Os08t0139500-00
Chr08	irgsp1_rep	CDS	2203740	2203788	.	-	0	Parent=Os08t0139500-00
Chr08	irgsp1_rep	CDS	2203447	2203655	.	-	2	Parent=Os08t0139500-00
Chr08	irgsp1_rep	mRNA	2210027	2213892	.	-	.	ID=Os08t0139700-01;Name=Os08t0139700-01;Locus_id=Os08g0139700;Oryzabase Gene Symbol Synonym(s)=OsTPS29%2C TPS29%2C OsCAS%2C CAS%2C OsTPS3%2C TPS3;Oryzabase Gene Name Synonym(s)=Terpene synthase 29%2C beta-caryophyllene synthetase;Note=Similar to terpene synthase 6.;Transcript_evidence=AK241679 (DDBJ%2C Best hit);ORF_evidence=NP_001146893.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: lyase activity (GO:0016829);InterPro=Terpene synthase-like (IPR001906),Terpene synthase%2C metal-binding domain (IPR005630),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930),Terpenoid synthase (IPR008949);NIAS_FLcDNA=J065193F24;Oryzabase=18250;TENOR=Os08t0139700-01;KEGG=Os08t0139700-01
Chr08	irgsp1_rep	five_prime_UTR	2213477	2213892	.	-	.	Parent=Os08t0139700-01
Chr08	irgsp1_rep	CDS	2213206	2213476	.	-	0	Parent=Os08t0139700-01
Chr08	irgsp1_rep	CDS	2212474	2212849	.	-	2	Parent=Os08t0139700-01
Chr08	irgsp1_rep	CDS	2211782	2212000	.	-	1	Parent=Os08t0139700-01
Chr08	irgsp1_rep	CDS	2211505	2211640	.	-	1	Parent=Os08t0139700-01
Chr08	irgsp1_rep	CDS	2211156	2211416	.	-	0	Parent=Os08t0139700-01
Chr08	irgsp1_rep	CDS	2210172	2210468	.	-	0	Parent=Os08t0139700-01
Chr08	irgsp1_rep	three_prime_UTR	2210027	2210171	.	-	.	Parent=Os08t0139700-01
Chr08	irgsp1_rep	mRNA	2256007	2257872	.	+	.	ID=Os08t0140300-01;Name=Os08t0140300-01;Locus_id=Os08g0140300;RAP-DB Gene Symbol Synonym(s)=TDC1%2C OsTDC%2C TDC2;RAP-DB Gene Name Synonym(s)=TRYPTOPHAN DECARBOXYLASE 1%2C Trp decarboxylase 1;CGSNL Gene Symbol=TDC1;CGSNL Gene Name=TRYPTOPHAN DECARBOXYLASE 1;Oryzabase Gene Symbol Synonym(s)=OsTDC%2C TDC%2C TDC2%2C OsTDC1;Oryzabase Gene Name Synonym(s)=Trp decarboxylase 1%2C tryptophan decarboxylase;Note=Aromatic L-amino acid decarboxylase (AADC)%2C Senescence-induced serotonin biosynthesis;Transcript_evidence=AK069031 (Genbank);ORF_evidence=Q6ZJK7 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: carboxylic acid metabolic process (GO:0019752),Molecular Function: catalytic activity (GO:0003824),Molecular Function: carboxy-lyase activity (GO:0016831),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent decarboxylase (IPR002129),Aromatic-L-amino-acid decarboxylase (IPR010977),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424),Pyridoxal-phosphate binding site (IPR021115);NIAS_FLcDNA=J023003D15;Manual Curation=July 27%2C 2009;Literature_PMID=17763868,19439571;Oryzabase=10293;Expression=AK069031;TENOR=Os08t0140300-01;KEGG=Os08t0140300-01 (EC:4.1.1.28)
Chr08	irgsp1_rep	five_prime_UTR	2256007	2256137	.	+	.	Parent=Os08t0140300-01
Chr08	irgsp1_rep	CDS	2256138	2257682	.	+	0	Parent=Os08t0140300-01
Chr08	irgsp1_rep	three_prime_UTR	2257683	2257872	.	+	.	Parent=Os08t0140300-01
Chr08	irgsp1_rep	mRNA	2268447	2270568	.	-	.	ID=Os08t0140500-01;Name=Os08t0140500-01;Locus_id=Os08g0140500;RAP-DB Gene Symbol Synonym(s)=TDC3;RAP-DB Gene Name Synonym(s)=tryptophan decarboxylase 3;CGSNL Gene Symbol=TDC3;CGSNL Gene Name=TRYPTOPHAN DECARBOXYLASE 3;Oryzabase Gene Symbol Synonym(s)=OsTDC3;Oryzabase Gene Name Synonym(s)=Trp decarboxylase 3;Note=Tryptophan decarboxylase%2C Key enzyme of serotonin biosynthesis;Transcript_evidence=Inferred from literature;ORF_evidence=Q6YZ18;GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: carboxylic acid metabolic process (GO:0019752),Molecular Function: catalytic activity (GO:0003824),Molecular Function: carboxy-lyase activity (GO:0016831),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent transferase (IPR015424),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015421),Pyridoxal phosphate-dependent transferase domain 1 (IPR015422),Pyridoxal phosphate-dependent decarboxylase (IPR002129),Aromatic-L-amino-acid decarboxylase (IPR010977),Pyridoxal-phosphate binding site (IPR021115);Manual Curation=October 29%2C 2018;Literature_PMID=29363563;Oryzabase=22265;TENOR=Os08t0140500-00
Chr08	irgsp1_rep	five_prime_UTR	2270473	2270568	.	-	.	Parent=Os08t0140500-01
Chr08	irgsp1_rep	CDS	2268901	2270472	.	-	0	Parent=Os08t0140500-01
Chr08	irgsp1_rep	three_prime_UTR	2268447	2268900	.	-	.	Parent=Os08t0140500-01
Chr08	irgsp1_rep	mRNA	2280575	2281198	.	-	.	ID=Os08t0140600-00;Name=Os08t0140600-00;Locus_id=Os08g0140600;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6YZ17 (UniProt);TENOR=Os08t0140600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	2280575	2281198	.	-	0	Parent=Os08t0140600-00
Chr08	irgsp1_rep	mRNA	2283831	2285117	.	-	.	ID=Os08t0140700-00;Name=Os08t0140700-00;Locus_id=Os08g0140700;Oryzabase Gene Symbol Synonym(s)=PR5;Oryzabase Gene Name Synonym(s)=pathogenesis-related gene 5%2C PATHOGENESIS-RELATED PROTEINS5;Note=Similar to CsAtPR5.;Transcript_evidence=tplb0019g04 (Wheat FLcDNA);ORF_evidence=B4G1N4 (UniProt);Oryzabase=20265;TENOR=Os08t0140700-00;KEGG=Os08t0140700-00
Chr08	irgsp1_rep	CDS	2284857	2285117	.	-	0	Parent=Os08t0140700-00
Chr08	irgsp1_rep	CDS	2283831	2284505	.	-	0	Parent=Os08t0140700-00
Chr08	irgsp1_rep	mRNA	2289390	2293615	.	+	.	ID=Os08t0141000-00;Name=Os08t0141000-00;Locus_id=Os08g0141000;Note=Conserved hypothetical protein.;Transcript_evidence=EU960934 (DDBJ);ORF_evidence=NP_001060971.2 (RefSeq);TENOR=Os08t0141000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	2289390	2289876	.	+	0	Parent=Os08t0141000-00
Chr08	irgsp1_rep	CDS	2291750	2291973	.	+	2	Parent=Os08t0141000-00
Chr08	irgsp1_rep	CDS	2292974	2293615	.	+	0	Parent=Os08t0141000-00
Chr08	irgsp1_rep	mRNA	2305809	2308492	.	+	.	ID=Os08t0141300-01;Name=Os08t0141300-01;Locus_id=Os08g0141300;Note=PapD-like domain containing protein.;Transcript_evidence=AK058337 (DDBJ%2C Best hit),AK067917 (DDBJ%2C Best hit);ORF_evidence=B6TP74 (UniProt);GO=Molecular Function: structural molecule activity (GO:0005198);InterPro=Major sperm protein (IPR000535),PapD-like (IPR008962);NIAS_FLcDNA=001-014-D04,J013123E21;Expression=AK058337;TENOR=Os08t0141300-01;KEGG=Os08t0141300-01
Chr08	irgsp1_rep	five_prime_UTR	2305809	2306031	.	+	.	Parent=Os08t0141300-01
Chr08	irgsp1_rep	CDS	2306032	2306203	.	+	0	Parent=Os08t0141300-01
Chr08	irgsp1_rep	CDS	2306658	2306728	.	+	2	Parent=Os08t0141300-01
Chr08	irgsp1_rep	CDS	2307124	2307205	.	+	0	Parent=Os08t0141300-01
Chr08	irgsp1_rep	CDS	2307293	2307411	.	+	2	Parent=Os08t0141300-01
Chr08	irgsp1_rep	CDS	2307682	2307759	.	+	0	Parent=Os08t0141300-01
Chr08	irgsp1_rep	CDS	2307844	2307963	.	+	0	Parent=Os08t0141300-01
Chr08	irgsp1_rep	CDS	2308073	2308132	.	+	0	Parent=Os08t0141300-01
Chr08	irgsp1_rep	three_prime_UTR	2308133	2308492	.	+	.	Parent=Os08t0141300-01
Chr08	irgsp1_rep	mRNA	2310032	2315261	.	-	.	ID=Os08t0141400-01;Name=Os08t0141400-01;Locus_id=Os08g0141400;CGSNL Gene Symbol=NDB3;CGSNL Gene Name=NAD(P) H DEHYDROGENASE B3;Oryzabase Gene Symbol Synonym(s)=OsNDB3;Oryzabase Gene Name Synonym(s)=NAD(P) H dehydrogenase B3;Note=Similar to mRNA%2C clone: RTFL01-03-I20.;Transcript_evidence=AK072710 (DDBJ%2C Best hit);ORF_evidence=E4MW20 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Pyridine nucleotide-disulphide oxidoreductase%2C NAD-binding domain (IPR001327),FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR013027),Pyridine nucleotide-disulphide oxidoreductase%2C FAD/NAD(P)-binding domain (IPR023753);NIAS_FLcDNA=J023142K02;Oryzabase=23303;TENOR=Os08t0141400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	2315094	2315261	.	-	.	Parent=Os08t0141400-01
Chr08	irgsp1_rep	CDS	2314999	2315093	.	-	0	Parent=Os08t0141400-01
Chr08	irgsp1_rep	CDS	2313431	2313695	.	-	1	Parent=Os08t0141400-01
Chr08	irgsp1_rep	CDS	2312862	2313068	.	-	0	Parent=Os08t0141400-01
Chr08	irgsp1_rep	CDS	2312356	2312606	.	-	0	Parent=Os08t0141400-01
Chr08	irgsp1_rep	CDS	2311940	2312195	.	-	1	Parent=Os08t0141400-01
Chr08	irgsp1_rep	three_prime_UTR	2311798	2311939	.	-	.	Parent=Os08t0141400-01
Chr08	irgsp1_rep	three_prime_UTR	2311168	2311440	.	-	.	Parent=Os08t0141400-01
Chr08	irgsp1_rep	three_prime_UTR	2310938	2311059	.	-	.	Parent=Os08t0141400-01
Chr08	irgsp1_rep	three_prime_UTR	2310568	2310687	.	-	.	Parent=Os08t0141400-01
Chr08	irgsp1_rep	three_prime_UTR	2310032	2310455	.	-	.	Parent=Os08t0141400-01
Chr08	irgsp1_rep	mRNA	2322547	2323638	.	-	.	ID=Os08t0141700-02;Name=Os08t0141700-02;Locus_id=Os08g0141700;Note=Pectinesterase inhibitor domain containing protein.;Transcript_evidence=AK072310 (DDBJ%2C Best hit),AK071817 (DDBJ%2C Best hit);ORF_evidence=B8BAM8 (UniProt);NIAS_FLcDNA=J023024E16,J023114I17;Expression=AK072310;TENOR=Os08t0141700-02;KEGG=Os08t0141700-02
Chr08	irgsp1_rep	five_prime_UTR	2323598	2323638	.	-	.	Parent=Os08t0141700-02
Chr08	irgsp1_rep	CDS	2323022	2323597	.	-	0	Parent=Os08t0141700-02
Chr08	irgsp1_rep	three_prime_UTR	2322547	2323021	.	-	.	Parent=Os08t0141700-02
Chr08	irgsp1_rep	mRNA	2344052	2344747	.	-	.	ID=Os08t0142500-01;Name=Os08t0142500-01;Locus_id=Os08g0142500;Note=Pectinesterase inhibitor domain containing protein.;Transcript_evidence=AK242564 (DDBJ%2C Best hit);ORF_evidence=NP_001175375.1 (RefSeq);GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);NIAS_FLcDNA=J090004K22;TENOR=Os08t0142500-01;KEGG=Os08t0142500-01
Chr08	irgsp1_rep	five_prime_UTR	2344709	2344747	.	-	.	Parent=Os08t0142500-01
Chr08	irgsp1_rep	CDS	2344121	2344708	.	-	0	Parent=Os08t0142500-01
Chr08	irgsp1_rep	three_prime_UTR	2344052	2344120	.	-	.	Parent=Os08t0142500-01
Chr08	irgsp1_rep	mRNA	2365478	2366050	.	-	.	ID=Os08t0142900-00;Name=Os08t0142900-00;Locus_id=Os08g0142900;Note=Pectinesterase inhibitor domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B7F9K5 (UniProt);GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);TENOR=Os08t0142900-00;KEGG=Os08t0142900-00
Chr08	irgsp1_rep	CDS	2365478	2366050	.	-	0	Parent=Os08t0142900-00
Chr08	irgsp1_rep	mRNA	2373797	2374447	.	-	.	ID=Os08t0143150-00;Name=Os08t0143150-00;Locus_id=Os08g0143150;Note=Similar to retrotransposon protein.;Transcript_evidence=EU953494 (DDBJ);ORF_evidence=NP_001158937.1 (RefSeq);TENOR=Os08t0143150-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	2374433	2374447	.	-	.	Parent=Os08t0143150-00
Chr08	irgsp1_rep	CDS	2373797	2374432	.	-	0	Parent=Os08t0143150-00
Chr08	irgsp1_rep	mRNA	2382108	2385161	.	+	.	ID=Os08t0143300-00;Name=Os08t0143300-00;Locus_id=Os08g0143300;Oryzabase Gene Symbol Synonym(s)=OsACS3;Oryzabase Gene Name Synonym(s)=acyl-CoA synthetase 3;Note=AMP-dependent synthetase and ligase domain containing protein.;Transcript_evidence=AK363916 (DDBJ);ORF_evidence=Q6YYZ2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873),AMP-binding%2C conserved site (IPR020845);Oryzabase=15668;TENOR=Os08t0143300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	2382108	2382154	.	+	.	Parent=Os08t0143300-00
Chr08	irgsp1_rep	CDS	2382155	2383279	.	+	0	Parent=Os08t0143300-00
Chr08	irgsp1_rep	CDS	2383703	2383892	.	+	0	Parent=Os08t0143300-00
Chr08	irgsp1_rep	CDS	2384126	2384265	.	+	2	Parent=Os08t0143300-00
Chr08	irgsp1_rep	CDS	2384445	2384512	.	+	0	Parent=Os08t0143300-00
Chr08	irgsp1_rep	CDS	2384633	2384735	.	+	1	Parent=Os08t0143300-00
Chr08	irgsp1_rep	CDS	2385012	2385161	.	+	0	Parent=Os08t0143300-00
Chr08	irgsp1_rep	mRNA	2385537	2389276	.	-	.	ID=Os08t0143400-01;Name=Os08t0143400-01;Locus_id=Os08g0143400;RAP-DB Gene Symbol Synonym(s)=Hd18%2C OsHDMA703%2C HDMA703;RAP-DB Gene Name Synonym(s)=Heading date 18%2C SWIRM domain-containing protein HDMA703;Oryzabase Gene Symbol Synonym(s)=OsHDMA703%2C HDMA703%2C OsPAO10%2C PAO10;Oryzabase Gene Name Synonym(s)=SWIRM domain-containing protein HDMA703%2C histone lysine-specific demethylase 703%2C polyamide oxidase 10;Note=SWIRM and amine oxidase domain-containing protein%2C Homolog of Arabidopsis FLOWERING LOCUS D (FLD)%2C Control of flowering time;Transcript_evidence=AK120532,LC085838;ORF_evidence=Q6YYZ1,A0A146F8E4;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Homeodomain-like (IPR009057),SWIRM domain (IPR007526),Winged helix-turn-helix DNA-binding domain (IPR011991),FAD/NAD(P)-binding domain (IPR023753),Amine oxidase (IPR002937);NIAS_FLcDNA=J013128B21;Manual Curation=July 13%2C 2016;Literature_PMID=27318280;Oryzabase=12523;Expression=AK120532;TENOR=Os08t0143400-01;KEGG=Os08t0143400-01 (EC:1.-.-.-)
Chr08	irgsp1_rep	five_prime_UTR	2389227	2389276	.	-	.	Parent=Os08t0143400-01
Chr08	irgsp1_rep	CDS	2387690	2389226	.	-	0	Parent=Os08t0143400-01
Chr08	irgsp1_rep	CDS	2385914	2386668	.	-	2	Parent=Os08t0143400-01
Chr08	irgsp1_rep	three_prime_UTR	2385537	2385913	.	-	.	Parent=Os08t0143400-01
Chr08	irgsp1_rep	mRNA	2385753	2389252	.	-	.	ID=Os08t0143400-02;Name=Os08t0143400-02;Locus_id=Os08g0143400;Oryzabase Gene Symbol Synonym(s)=OsHDMA703%2C HDMA703%2C OsPAO10%2C PAO10;Oryzabase Gene Name Synonym(s)=SWIRM domain-containing protein HDMA703%2C histone lysine-specific demethylase 703%2C polyamide oxidase 10;Note=Similar to cDNA clone:J013128B21%2C full insert sequence.;Transcript_evidence=AK066792 (DDBJ%2C Best hit);ORF_evidence=B7F607 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Amine oxidase (IPR002937);NIAS_FLcDNA=J013079C13;Oryzabase=12523;Expression=AK066792;TENOR=Os08t0143400-02;KEGG=Os08t0143400-02 (EC:1.-.-.-)
Chr08	irgsp1_rep	five_prime_UTR	2389227	2389252	.	-	.	Parent=Os08t0143400-02
Chr08	irgsp1_rep	CDS	2388924	2389226	.	-	0	Parent=Os08t0143400-02
Chr08	irgsp1_rep	CDS	2387690	2388707	.	-	0	Parent=Os08t0143400-02
Chr08	irgsp1_rep	CDS	2385914	2386668	.	-	2	Parent=Os08t0143400-02
Chr08	irgsp1_rep	three_prime_UTR	2385753	2385913	.	-	.	Parent=Os08t0143400-02
Chr08	irgsp1_rep	mRNA	2389729	2392979	.	+	.	ID=Os08t0143500-01;Name=Os08t0143500-01;Locus_id=Os08g0143500;Note=Glycosyl transferase%2C family 14 protein.;Transcript_evidence=AK071122 (DDBJ%2C Best hit);ORF_evidence=NP_001147601.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020),Molecular Function: acetylglucosaminyltransferase activity (GO:0008375);InterPro=Glycosyl transferase%2C family 14 (IPR003406);NIAS_FLcDNA=J023081E17;Expression=AK071122;TENOR=Os08t0143500-01;KEGG=Os08t0143500-01 (EC:2.4.2.26)
Chr08	irgsp1_rep	five_prime_UTR	2389729	2389921	.	+	.	Parent=Os08t0143500-01
Chr08	irgsp1_rep	CDS	2389922	2390564	.	+	0	Parent=Os08t0143500-01
Chr08	irgsp1_rep	CDS	2391098	2391173	.	+	2	Parent=Os08t0143500-01
Chr08	irgsp1_rep	CDS	2391286	2391401	.	+	1	Parent=Os08t0143500-01
Chr08	irgsp1_rep	CDS	2392301	2392866	.	+	2	Parent=Os08t0143500-01
Chr08	irgsp1_rep	three_prime_UTR	2392867	2392979	.	+	.	Parent=Os08t0143500-01
Chr08	irgsp1_rep	mRNA	2389745	2390989	.	+	.	ID=Os08t0143500-02;Name=Os08t0143500-02;Locus_id=Os08g0143500;Note=Similar to xylosyltransferase 2.;Transcript_evidence=AK061094 (DDBJ%2C Best hit);ORF_evidence=NP_001147601.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020),Molecular Function: acetylglucosaminyltransferase activity (GO:0008375);InterPro=Glycosyl transferase%2C family 14 (IPR003406);NIAS_FLcDNA=006-207-A03;Expression=AK061094;TENOR=Os08t0143500-02;KEGG=Os08t0143500-02
Chr08	irgsp1_rep	five_prime_UTR	2389745	2389786	.	+	.	Parent=Os08t0143500-02
Chr08	irgsp1_rep	CDS	2389787	2389797	.	+	0	Parent=Os08t0143500-02
Chr08	irgsp1_rep	CDS	2390086	2390593	.	+	1	Parent=Os08t0143500-02
Chr08	irgsp1_rep	three_prime_UTR	2390594	2390989	.	+	.	Parent=Os08t0143500-02
Chr08	irgsp1_rep	mRNA	2405904	2407588	.	+	.	ID=Os08t0143600-00;Name=Os08t0143600-00;Locus_id=Os08g0143600;Oryzabase Gene Symbol Synonym(s)=OsDAD1%3B2%2C DAD1%3B2;Note=Similar to Avr9/Cf-9 rapidly elicited protein 14 (Fragment).;Transcript_evidence=EU957656 (DDBJ);ORF_evidence=Q6ZDM3 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921);Oryzabase=21177;TENOR=Os08t0143600-00;KEGG=Os08t0143600-00
Chr08	irgsp1_rep	CDS	2405904	2407520	.	+	0	Parent=Os08t0143600-00
Chr08	irgsp1_rep	three_prime_UTR	2407521	2407588	.	+	.	Parent=Os08t0143600-00
Chr08	irgsp1_rep	mRNA	2412327	2418672	.	-	.	ID=Os08t0143700-01;Name=Os08t0143700-01;Locus_id=Os08g0143700;Note=Protein of unknown function DUF676%2C hydrolase-like domain containing protein.;Transcript_evidence=AK106434 (DDBJ%2C Best hit);ORF_evidence=NP_001150938.1 (RefSeq);InterPro=Domain of unknown function DUF676%2C lipase-like (IPR007751);NIAS_FLcDNA=002-103-C11;Expression=AK106434;TENOR=Os08t0143700-01;KEGG=Os08t0143700-01
Chr08	irgsp1_rep	five_prime_UTR	2418511	2418672	.	-	.	Parent=Os08t0143700-01
Chr08	irgsp1_rep	CDS	2418371	2418510	.	-	0	Parent=Os08t0143700-01
Chr08	irgsp1_rep	CDS	2416896	2416963	.	-	1	Parent=Os08t0143700-01
Chr08	irgsp1_rep	CDS	2416749	2416819	.	-	2	Parent=Os08t0143700-01
Chr08	irgsp1_rep	CDS	2416371	2416586	.	-	0	Parent=Os08t0143700-01
Chr08	irgsp1_rep	CDS	2415587	2415750	.	-	0	Parent=Os08t0143700-01
Chr08	irgsp1_rep	CDS	2415392	2415447	.	-	1	Parent=Os08t0143700-01
Chr08	irgsp1_rep	CDS	2415234	2415286	.	-	2	Parent=Os08t0143700-01
Chr08	irgsp1_rep	CDS	2414996	2415113	.	-	0	Parent=Os08t0143700-01
Chr08	irgsp1_rep	CDS	2412788	2412885	.	-	2	Parent=Os08t0143700-01
Chr08	irgsp1_rep	CDS	2412598	2412666	.	-	0	Parent=Os08t0143700-01
Chr08	irgsp1_rep	three_prime_UTR	2412327	2412597	.	-	.	Parent=Os08t0143700-01
Chr08	irgsp1_rep	mRNA	2427513	2431147	.	-	.	ID=Os08t0143900-01;Name=Os08t0143900-01;Locus_id=Os08g0143900;Note=Hypothetical protein.;Transcript_evidence=AK108062 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-138-B03;TENOR=Os08t0143900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	2431117	2431147	.	-	.	Parent=Os08t0143900-01
Chr08	irgsp1_rep	CDS	2430790	2431116	.	-	0	Parent=Os08t0143900-01
Chr08	irgsp1_rep	three_prime_UTR	2429604	2430789	.	-	.	Parent=Os08t0143900-01
Chr08	irgsp1_rep	three_prime_UTR	2427513	2427801	.	-	.	Parent=Os08t0143900-01
Chr08	irgsp1_rep	mRNA	2433858	2436741	.	+	.	ID=Os08t0144000-01;Name=Os08t0144000-01;Locus_id=Os08g0144000;Note=Myb%2C DNA-binding domain containing protein.;Transcript_evidence=AK073681 (DDBJ%2C Best hit);ORF_evidence=B4FLJ6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=SANT domain%2C DNA binding (IPR001005),Zinc finger%2C CCHC-type (IPR001878),Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Zinc finger%2C CCHC retroviral-type (IPR013084),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J033054K18;Expression=AK073681;TENOR=Os08t0144000-01;KEGG=Os08t0144000-01
Chr08	irgsp1_rep	five_prime_UTR	2433858	2433867	.	+	.	Parent=Os08t0144000-01
Chr08	irgsp1_rep	CDS	2433868	2434171	.	+	0	Parent=Os08t0144000-01
Chr08	irgsp1_rep	CDS	2435410	2435618	.	+	2	Parent=Os08t0144000-01
Chr08	irgsp1_rep	CDS	2435856	2436494	.	+	0	Parent=Os08t0144000-01
Chr08	irgsp1_rep	three_prime_UTR	2436495	2436741	.	+	.	Parent=Os08t0144000-01
Chr08	irgsp1_rep	mRNA	2495080	2496009	.	+	.	ID=Os08t0144100-01;Name=Os08t0144100-01;Locus_id=Os08g0144100;CGSNL Gene Symbol=CML32;CGSNL Gene Name=CALMODULIN-LIKE PROTEIN 32;Oryzabase Gene Symbol Synonym(s)=OsCML32;Oryzabase Gene Name Synonym(s)=calmodulin-like protein 32;Note=Similar to Avr9/Cf-9 rapidly elicited protein 31.;Transcript_evidence=AK071435 (DDBJ%2C Best hit);ORF_evidence=B7E7X0 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J023089J12;Oryzabase=10516;Expression=AK071435;TENOR=Os08t0144100-01;KEGG=Os08t0144100-01
Chr08	irgsp1_rep	five_prime_UTR	2495080	2495153	.	+	.	Parent=Os08t0144100-01
Chr08	irgsp1_rep	CDS	2495154	2495744	.	+	0	Parent=Os08t0144100-01
Chr08	irgsp1_rep	three_prime_UTR	2495745	2496009	.	+	.	Parent=Os08t0144100-01
Chr08	irgsp1_rep	mRNA	2507299	2514517	.	-	.	ID=Os08t0144400-01;Name=Os08t0144400-01;Locus_id=Os08g0144400;Oryzabase Gene Symbol Synonym(s)=OsDegp11%2C DEGP11%2C OsDeg-like 2;Oryzabase Gene Name Synonym(s)=Deg protease 11%2C DEG PROTEASE 11;Note=PDZ/DHR/GLGF domain containing protein.;Transcript_evidence=AK102975 (DDBJ%2C Best hit);ORF_evidence=B7EQH0 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein binding (GO:0005515);InterPro=PDZ/DHR/GLGF (IPR001478),Peptidase cysteine/serine%2C trypsin-like (IPR009003);NIAS_FLcDNA=J033115K23;Oryzabase=20087;Expression=AK102975;TENOR=Os08t0144400-01;KEGG=Os08t0144400-01
Chr08	irgsp1_rep	five_prime_UTR	2514433	2514517	.	-	.	Parent=Os08t0144400-01
Chr08	irgsp1_rep	CDS	2513979	2514432	.	-	0	Parent=Os08t0144400-01
Chr08	irgsp1_rep	CDS	2513747	2513884	.	-	2	Parent=Os08t0144400-01
Chr08	irgsp1_rep	CDS	2513519	2513652	.	-	2	Parent=Os08t0144400-01
Chr08	irgsp1_rep	CDS	2512100	2512369	.	-	0	Parent=Os08t0144400-01
Chr08	irgsp1_rep	CDS	2511892	2512022	.	-	0	Parent=Os08t0144400-01
Chr08	irgsp1_rep	CDS	2509744	2509861	.	-	1	Parent=Os08t0144400-01
Chr08	irgsp1_rep	CDS	2509544	2509633	.	-	0	Parent=Os08t0144400-01
Chr08	irgsp1_rep	CDS	2509379	2509447	.	-	0	Parent=Os08t0144400-01
Chr08	irgsp1_rep	CDS	2509188	2509265	.	-	0	Parent=Os08t0144400-01
Chr08	irgsp1_rep	CDS	2508827	2508835	.	-	0	Parent=Os08t0144400-01
Chr08	irgsp1_rep	three_prime_UTR	2508411	2508826	.	-	.	Parent=Os08t0144400-01
Chr08	irgsp1_rep	three_prime_UTR	2507299	2507651	.	-	.	Parent=Os08t0144400-01
Chr08	irgsp1_rep	mRNA	2513233	2514517	.	-	.	ID=Os08t0144400-02;Name=Os08t0144400-02;Locus_id=Os08g0144400;Oryzabase Gene Symbol Synonym(s)=OsDegp11%2C DEGP11%2C OsDeg-like 2;Oryzabase Gene Name Synonym(s)=Deg protease 11%2C DEG PROTEASE 11;Note=Hypothetical conserved gene.;Transcript_evidence=AK108707 (DDBJ%2C Best hit);ORF_evidence=B9FZ15 (UniProt);NIAS_FLcDNA=002-150-A07;Oryzabase=20087;Expression=AK108707;TENOR=Os08t0144400-02;KEGG=Os08t0144400-02
Chr08	irgsp1_rep	five_prime_UTR	2514433	2514517	.	-	.	Parent=Os08t0144400-02
Chr08	irgsp1_rep	CDS	2513920	2514432	.	-	0	Parent=Os08t0144400-02
Chr08	irgsp1_rep	three_prime_UTR	2513233	2513919	.	-	.	Parent=Os08t0144400-02
Chr08	irgsp1_rep	mRNA	2572008	2573290	.	+	.	ID=Os08t0145501-01;Name=Os08t0145501-01;Locus_id=Os08g0145501;Note=Conserved hypothetical protein.;Transcript_evidence=AK241170 (DDBJ%2C Best hit);ORF_evidence=B9FSE2 (UniProt);NIAS_FLcDNA=J065117L04;TENOR=Os08t0145501-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	2572008	2572993	.	+	.	Parent=Os08t0145501-01
Chr08	irgsp1_rep	CDS	2572994	2573098	.	+	0	Parent=Os08t0145501-01
Chr08	irgsp1_rep	three_prime_UTR	2573099	2573290	.	+	.	Parent=Os08t0145501-01
Chr08	irgsp1_rep	mRNA	2576587	2581747	.	-	.	ID=Os08t0145600-01;Name=Os08t0145600-01;Locus_id=Os08g0145600;Note=Similar to cDNA clone:J023091L02%2C full insert sequence.;Transcript_evidence=AK058685 (DDBJ%2C Best hit);ORF_evidence=B7EQH0 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein binding (GO:0005515);InterPro=PDZ/DHR/GLGF (IPR001478),Peptidase cysteine/serine%2C trypsin-like (IPR009003);NIAS_FLcDNA=001-019-A09;TENOR=Os08t0145600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	2581746	2581747	.	-	.	Parent=Os08t0145600-01
Chr08	irgsp1_rep	CDS	2581539	2581745	.	-	0	Parent=Os08t0145600-01
Chr08	irgsp1_rep	CDS	2581300	2581430	.	-	0	Parent=Os08t0145600-01
Chr08	irgsp1_rep	CDS	2580457	2580574	.	-	1	Parent=Os08t0145600-01
Chr08	irgsp1_rep	CDS	2580307	2580396	.	-	0	Parent=Os08t0145600-01
Chr08	irgsp1_rep	CDS	2580159	2580227	.	-	0	Parent=Os08t0145600-01
Chr08	irgsp1_rep	CDS	2578223	2578228	.	-	0	Parent=Os08t0145600-01
Chr08	irgsp1_rep	three_prime_UTR	2577808	2578222	.	-	.	Parent=Os08t0145600-01
Chr08	irgsp1_rep	three_prime_UTR	2577153	2577230	.	-	.	Parent=Os08t0145600-01
Chr08	irgsp1_rep	three_prime_UTR	2576587	2576763	.	-	.	Parent=Os08t0145600-01
Chr08	irgsp1_rep	mRNA	2583495	2584496	.	-	.	ID=Os08t0146001-00;Name=Os08t0146001-00;Locus_id=Os08g0146001;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FZ18 (UniProt);TENOR=Os08t0146001-00;KEGG=Os08t0146001-00
Chr08	irgsp1_rep	CDS	2584124	2584496	.	-	0	Parent=Os08t0146001-00
Chr08	irgsp1_rep	CDS	2583875	2584000	.	-	2	Parent=Os08t0146001-00
Chr08	irgsp1_rep	CDS	2583667	2583797	.	-	2	Parent=Os08t0146001-00
Chr08	irgsp1_rep	CDS	2583495	2583530	.	-	0	Parent=Os08t0146001-00
Chr08	irgsp1_rep	mRNA	2658723	2662413	.	-	.	ID=Os08t0147001-00;Name=Os08t0147001-00;Locus_id=Os08g0147001;Note=Conserved hypothetical protein.;Transcript_evidence=AK375812 (DDBJ);ORF_evidence=Q75IN1 (UniProt);TENOR=Os08t0147001-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	2661892	2662413	.	-	0	Parent=Os08t0147001-00
Chr08	irgsp1_rep	three_prime_UTR	2661606	2661891	.	-	.	Parent=Os08t0147001-00
Chr08	irgsp1_rep	three_prime_UTR	2658723	2658909	.	-	.	Parent=Os08t0147001-00
Chr08	irgsp1_rep	mRNA	2760819	2765216	.	-	.	ID=Os08t0148267-00;Name=Os08t0148267-00;Locus_id=Os08g0148267;Note=Hypothetical conserved gene.;Transcript_evidence=BT042763 (DDBJ);ORF_evidence=XP_002870108.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Oxidoreductase%2C N-terminal (IPR000683),Oxidoreductase%2C C-terminal (IPR004104),NAD(P)-binding domain (IPR016040);TENOR=Os08t0148267-00;KEGG=Os08t0148267-00
Chr08	irgsp1_rep	CDS	2764925	2765216	.	-	0	Parent=Os08t0148267-00
Chr08	irgsp1_rep	CDS	2763426	2763586	.	-	2	Parent=Os08t0148267-00
Chr08	irgsp1_rep	CDS	2762873	2763037	.	-	0	Parent=Os08t0148267-00
Chr08	irgsp1_rep	CDS	2762624	2762788	.	-	0	Parent=Os08t0148267-00
Chr08	irgsp1_rep	CDS	2762308	2762442	.	-	0	Parent=Os08t0148267-00
Chr08	irgsp1_rep	CDS	2761365	2761462	.	-	0	Parent=Os08t0148267-00
Chr08	irgsp1_rep	CDS	2760819	2761011	.	-	1	Parent=Os08t0148267-00
Chr08	irgsp1_rep	mRNA	2772327	2774458	.	+	.	ID=Os08t0148300-01;Name=Os08t0148300-01;Locus_id=Os08g0148300;Note=Conserved hypothetical protein.;Transcript_evidence=AK105581 (DDBJ%2C Best hit);ORF_evidence=A3BPL9 (UniProt);NIAS_FLcDNA=001-128-E05;TENOR=Os08t0148300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	2772327	2772939	.	+	0	Parent=Os08t0148300-01
Chr08	irgsp1_rep	CDS	2773331	2773734	.	+	2	Parent=Os08t0148300-01
Chr08	irgsp1_rep	CDS	2773976	2773993	.	+	0	Parent=Os08t0148300-01
Chr08	irgsp1_rep	three_prime_UTR	2773994	2774458	.	+	.	Parent=Os08t0148300-01
Chr08	irgsp1_rep	mRNA	2782926	2785760	.	+	.	ID=Os08t0148566-01;Name=Os08t0148566-01;Locus_id=Os08g0148566;Note=Peptidase%2C trypsin-like serine and cysteine domain containing protein.;Transcript_evidence=AK242949 (DDBJ%2C Best hit);ORF_evidence=NP_001175381.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Peptidase cysteine/serine%2C trypsin-like (IPR009003);NIAS_FLcDNA=J090088J19;TENOR=Os08t0148566-01;KEGG=Os08t0148566-01
Chr08	irgsp1_rep	five_prime_UTR	2782926	2783215	.	+	.	Parent=Os08t0148566-01
Chr08	irgsp1_rep	five_prime_UTR	2784304	2784314	.	+	.	Parent=Os08t0148566-01
Chr08	irgsp1_rep	CDS	2784315	2785229	.	+	0	Parent=Os08t0148566-01
Chr08	irgsp1_rep	CDS	2785314	2785355	.	+	0	Parent=Os08t0148566-01
Chr08	irgsp1_rep	three_prime_UTR	2785356	2785374	.	+	.	Parent=Os08t0148566-01
Chr08	irgsp1_rep	three_prime_UTR	2785486	2785760	.	+	.	Parent=Os08t0148566-01
Chr08	irgsp1_rep	mRNA	2786227	2792182	.	-	.	ID=Os08t0148600-01;Name=Os08t0148600-01;Locus_id=Os08g0148600;Note=Similar to Endoribonuclease Dicer homolog 3a.;Transcript_evidence=AK068714 (DDBJ%2C Best hit);ORF_evidence=Q5N870 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545);NIAS_FLcDNA=J013166M17;TENOR=Os08t0148600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	2791706	2792182	.	-	.	Parent=Os08t0148600-01
Chr08	irgsp1_rep	CDS	2791690	2791705	.	-	0	Parent=Os08t0148600-01
Chr08	irgsp1_rep	CDS	2791379	2791472	.	-	2	Parent=Os08t0148600-01
Chr08	irgsp1_rep	CDS	2791094	2791274	.	-	1	Parent=Os08t0148600-01
Chr08	irgsp1_rep	CDS	2790984	2791016	.	-	0	Parent=Os08t0148600-01
Chr08	irgsp1_rep	three_prime_UTR	2790904	2790983	.	-	.	Parent=Os08t0148600-01
Chr08	irgsp1_rep	three_prime_UTR	2790633	2790697	.	-	.	Parent=Os08t0148600-01
Chr08	irgsp1_rep	three_prime_UTR	2789938	2790002	.	-	.	Parent=Os08t0148600-01
Chr08	irgsp1_rep	three_prime_UTR	2789485	2789616	.	-	.	Parent=Os08t0148600-01
Chr08	irgsp1_rep	three_prime_UTR	2788994	2789375	.	-	.	Parent=Os08t0148600-01
Chr08	irgsp1_rep	three_prime_UTR	2788843	2788922	.	-	.	Parent=Os08t0148600-01
Chr08	irgsp1_rep	three_prime_UTR	2786227	2788547	.	-	.	Parent=Os08t0148600-01
Chr08	irgsp1_rep	mRNA	2787750	2792182	.	-	.	ID=Os08t0148600-02;Name=Os08t0148600-02;Locus_id=Os08g0148600;Note=Similar to Endoribonuclease Dicer homolog 3a.;Transcript_evidence=AK064499 (DDBJ%2C Best hit);ORF_evidence=Q5N870 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545);NIAS_FLcDNA=002-111-D03;TENOR=Os08t0148600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	2791706	2792182	.	-	.	Parent=Os08t0148600-02
Chr08	irgsp1_rep	CDS	2791690	2791705	.	-	0	Parent=Os08t0148600-02
Chr08	irgsp1_rep	CDS	2791379	2791472	.	-	2	Parent=Os08t0148600-02
Chr08	irgsp1_rep	CDS	2791094	2791274	.	-	1	Parent=Os08t0148600-02
Chr08	irgsp1_rep	CDS	2790984	2791016	.	-	0	Parent=Os08t0148600-02
Chr08	irgsp1_rep	three_prime_UTR	2790904	2790983	.	-	.	Parent=Os08t0148600-02
Chr08	irgsp1_rep	three_prime_UTR	2790633	2790697	.	-	.	Parent=Os08t0148600-02
Chr08	irgsp1_rep	three_prime_UTR	2789938	2790002	.	-	.	Parent=Os08t0148600-02
Chr08	irgsp1_rep	three_prime_UTR	2789485	2789616	.	-	.	Parent=Os08t0148600-02
Chr08	irgsp1_rep	three_prime_UTR	2788994	2789375	.	-	.	Parent=Os08t0148600-02
Chr08	irgsp1_rep	three_prime_UTR	2788843	2788913	.	-	.	Parent=Os08t0148600-02
Chr08	irgsp1_rep	three_prime_UTR	2788445	2788547	.	-	.	Parent=Os08t0148600-02
Chr08	irgsp1_rep	three_prime_UTR	2787750	2788033	.	-	.	Parent=Os08t0148600-02
Chr08	irgsp1_rep	mRNA	2808273	2813026	.	+	.	ID=Os08t0149000-01;Name=Os08t0149000-01;Locus_id=Os08g0149000;Oryzabase Gene Symbol Synonym(s)=OsSTA205;Note=Conserved hypothetical protein.;Transcript_evidence=AK100458 (DDBJ%2C Best hit);ORF_evidence=B8BAN7 (UniProt);NIAS_FLcDNA=J023091L02;Oryzabase=19481;TENOR=Os08t0149000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	2808273	2808400	.	+	.	Parent=Os08t0149000-01
Chr08	irgsp1_rep	CDS	2808401	2808818	.	+	0	Parent=Os08t0149000-01
Chr08	irgsp1_rep	CDS	2808919	2809056	.	+	2	Parent=Os08t0149000-01
Chr08	irgsp1_rep	CDS	2809147	2809266	.	+	2	Parent=Os08t0149000-01
Chr08	irgsp1_rep	CDS	2810055	2810077	.	+	2	Parent=Os08t0149000-01
Chr08	irgsp1_rep	three_prime_UTR	2810078	2810324	.	+	.	Parent=Os08t0149000-01
Chr08	irgsp1_rep	three_prime_UTR	2810407	2810537	.	+	.	Parent=Os08t0149000-01
Chr08	irgsp1_rep	three_prime_UTR	2810708	2810825	.	+	.	Parent=Os08t0149000-01
Chr08	irgsp1_rep	three_prime_UTR	2810905	2810994	.	+	.	Parent=Os08t0149000-01
Chr08	irgsp1_rep	three_prime_UTR	2811075	2811143	.	+	.	Parent=Os08t0149000-01
Chr08	irgsp1_rep	three_prime_UTR	2811247	2811324	.	+	.	Parent=Os08t0149000-01
Chr08	irgsp1_rep	three_prime_UTR	2811689	2813026	.	+	.	Parent=Os08t0149000-01
Chr08	irgsp1_rep	mRNA	2816443	2818078	.	-	.	ID=Os08t0149100-01;Name=Os08t0149100-01;Locus_id=Os08g0149100;Note=Conserved hypothetical protein.;Transcript_evidence=AK059513 (DDBJ%2C Best hit);ORF_evidence=B9FZ25 (UniProt);NIAS_FLcDNA=001-029-B07;TENOR=Os08t0149100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	2817398	2818078	.	-	0	Parent=Os08t0149100-01
Chr08	irgsp1_rep	CDS	2817159	2817320	.	-	0	Parent=Os08t0149100-01
Chr08	irgsp1_rep	CDS	2816848	2817071	.	-	0	Parent=Os08t0149100-01
Chr08	irgsp1_rep	CDS	2816752	2816755	.	-	1	Parent=Os08t0149100-01
Chr08	irgsp1_rep	three_prime_UTR	2816443	2816751	.	-	.	Parent=Os08t0149100-01
Chr08	irgsp1_rep	mRNA	2834715	2835215	.	-	.	ID=Os08t0149333-00;Name=Os08t0149333-00;Locus_id=Os08g0149333;Note=Conserved hypothetical protein.;Transcript_evidence=EU945087 (DDBJ);ORF_evidence=Q84PY8 (UniProt);TENOR=Os08t0149333-00
Chr08	irgsp1_rep	CDS	2834715	2835215	.	-	0	Parent=Os08t0149333-00
Chr08	irgsp1_rep	mRNA	2854670	2857413	.	-	.	ID=Os08t0149566-00;Name=Os08t0149566-00;Locus_id=Os08g0149566;Note=Hypothetical protein.;Transcript_evidence=tplb0052d04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0149566-00
Chr08	irgsp1_rep	five_prime_UTR	2856663	2857413	.	-	.	Parent=Os08t0149566-00
Chr08	irgsp1_rep	CDS	2856438	2856662	.	-	0	Parent=Os08t0149566-00
Chr08	irgsp1_rep	three_prime_UTR	2855865	2856437	.	-	.	Parent=Os08t0149566-00
Chr08	irgsp1_rep	three_prime_UTR	2854670	2855039	.	-	.	Parent=Os08t0149566-00
Chr08	irgsp1_rep	mRNA	2854800	2855093	.	+	.	ID=Os08t0149800-00;Name=Os08t0149800-00;Locus_id=Os08g0149800;Note=Conserved hypothetical protein.;Transcript_evidence=EU945087 (DDBJ);ORF_evidence=Q84PY2 (UniProt);TENOR=Os08t0149800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	2854800	2855093	.	+	0	Parent=Os08t0149800-00
Chr08	irgsp1_rep	mRNA	2856999	2857610	.	+	.	ID=Os08t0149850-00;Name=Os08t0149850-00;Locus_id=Os08g0149850;Note=Protein of unknown function DUF594 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q84PY2 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);TENOR=Os08t0149850-00
Chr08	irgsp1_rep	CDS	2856999	2857610	.	+	0	Parent=Os08t0149850-00
Chr08	irgsp1_rep	mRNA	2889065	2892003	.	-	.	ID=Os08t0150200-01;Name=Os08t0150200-01;Locus_id=Os08g0150200;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK065399 (DDBJ%2C Best hit);ORF_evidence=A2YR72 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013009A03;TENOR=Os08t0150200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	2890752	2892003	.	-	.	Parent=Os08t0150200-01
Chr08	irgsp1_rep	CDS	2890014	2890751	.	-	0	Parent=Os08t0150200-01
Chr08	irgsp1_rep	three_prime_UTR	2889914	2890013	.	-	.	Parent=Os08t0150200-01
Chr08	irgsp1_rep	three_prime_UTR	2889658	2889822	.	-	.	Parent=Os08t0150200-01
Chr08	irgsp1_rep	three_prime_UTR	2889065	2889572	.	-	.	Parent=Os08t0150200-01
Chr08	irgsp1_rep	mRNA	2909637	2912538	.	-	.	ID=Os08t0150600-01;Name=Os08t0150600-01;Locus_id=Os08g0150600;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK122058 (DDBJ%2C Best hit);ORF_evidence=B8BAP0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033114N01;TENOR=Os08t0150600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	2912417	2912538	.	-	.	Parent=Os08t0150600-01
Chr08	irgsp1_rep	five_prime_UTR	2911460	2911515	.	-	.	Parent=Os08t0150600-01
Chr08	irgsp1_rep	CDS	2911081	2911459	.	-	0	Parent=Os08t0150600-01
Chr08	irgsp1_rep	CDS	2910526	2910527	.	-	2	Parent=Os08t0150600-01
Chr08	irgsp1_rep	three_prime_UTR	2910327	2910525	.	-	.	Parent=Os08t0150600-01
Chr08	irgsp1_rep	three_prime_UTR	2910044	2910247	.	-	.	Parent=Os08t0150600-01
Chr08	irgsp1_rep	three_prime_UTR	2909637	2909967	.	-	.	Parent=Os08t0150600-01
Chr08	irgsp1_rep	mRNA	2918636	2921281	.	+	.	ID=Os08t0150700-01;Name=Os08t0150700-01;Locus_id=Os08g0150700;Oryzabase Gene Symbol Synonym(s)=OsFbox407%2C Os_F0406;Oryzabase Gene Name Synonym(s)=F-box protein 407;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK109659 (DDBJ%2C Best hit);ORF_evidence=NP_001152070.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-140-G02;Oryzabase=17180;Expression=AK109659;TENOR=Os08t0150700-01;KEGG=Os08t0150700-01
Chr08	irgsp1_rep	five_prime_UTR	2918636	2918695	.	+	.	Parent=Os08t0150700-01
Chr08	irgsp1_rep	CDS	2918696	2919022	.	+	0	Parent=Os08t0150700-01
Chr08	irgsp1_rep	CDS	2919154	2919272	.	+	0	Parent=Os08t0150700-01
Chr08	irgsp1_rep	CDS	2920655	2921108	.	+	1	Parent=Os08t0150700-01
Chr08	irgsp1_rep	three_prime_UTR	2921109	2921281	.	+	.	Parent=Os08t0150700-01
Chr08	irgsp1_rep	mRNA	2924246	2928513	.	+	.	ID=Os08t0150800-01;Name=Os08t0150800-01;Locus_id=Os08g0150800;Note=Similar to Tyrosyl-tRNA synthetase (Tyrosyl-tRNA ligase%3B TyrRS). class-I aaRS.;Transcript_evidence=AK101530 (DDBJ%2C Best hit);ORF_evidence=NP_001148699.1 (RefSeq);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: tyrosine-tRNA ligase activity (GO:0004831),Molecular Function: ATP binding (GO:0005524);InterPro=Aminoacyl-tRNA synthetase%2C class Ic (IPR002305),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Tyrosyl-tRNA synthetase%2C archaeal-type (IPR023617);NIAS_FLcDNA=J033047I05;Expression=AK101530;TENOR=Os08t0150800-01;KEGG=Os08t0150800-01 (EC:6.1.1.1)
Chr08	irgsp1_rep	five_prime_UTR	2924246	2924285	.	+	.	Parent=Os08t0150800-01
Chr08	irgsp1_rep	CDS	2924286	2924537	.	+	0	Parent=Os08t0150800-01
Chr08	irgsp1_rep	CDS	2925401	2925684	.	+	0	Parent=Os08t0150800-01
Chr08	irgsp1_rep	CDS	2925797	2925893	.	+	1	Parent=Os08t0150800-01
Chr08	irgsp1_rep	CDS	2926021	2926126	.	+	0	Parent=Os08t0150800-01
Chr08	irgsp1_rep	CDS	2926267	2926349	.	+	2	Parent=Os08t0150800-01
Chr08	irgsp1_rep	CDS	2926914	2927059	.	+	0	Parent=Os08t0150800-01
Chr08	irgsp1_rep	CDS	2927226	2927331	.	+	1	Parent=Os08t0150800-01
Chr08	irgsp1_rep	CDS	2927504	2927563	.	+	0	Parent=Os08t0150800-01
Chr08	irgsp1_rep	CDS	2928192	2928242	.	+	0	Parent=Os08t0150800-01
Chr08	irgsp1_rep	three_prime_UTR	2928243	2928513	.	+	.	Parent=Os08t0150800-01
Chr08	irgsp1_rep	mRNA	2934798	2940214	.	+	.	ID=Os08t0151000-00;Name=Os08t0151000-00;Locus_id=Os08g0151000;Note=Similar to Myb-like DNA-binding domain%2C SHAQKYF class family protein.;Transcript_evidence=AK335584 (DDBJ);ORF_evidence=B6TAA3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);TENOR=Os08t0151000-00;KEGG=Os08t0151000-00
Chr08	irgsp1_rep	five_prime_UTR	2934798	2934852	.	+	.	Parent=Os08t0151000-00
Chr08	irgsp1_rep	CDS	2934853	2935165	.	+	0	Parent=Os08t0151000-00
Chr08	irgsp1_rep	CDS	2937874	2938085	.	+	2	Parent=Os08t0151000-00
Chr08	irgsp1_rep	CDS	2938179	2938271	.	+	0	Parent=Os08t0151000-00
Chr08	irgsp1_rep	CDS	2938341	2938463	.	+	0	Parent=Os08t0151000-00
Chr08	irgsp1_rep	CDS	2939716	2939994	.	+	0	Parent=Os08t0151000-00
Chr08	irgsp1_rep	three_prime_UTR	2939995	2940214	.	+	.	Parent=Os08t0151000-00
Chr08	irgsp1_rep	mRNA	2948553	2951372	.	-	.	ID=Os08t0151300-01;Name=Os08t0151300-01;Locus_id=Os08g0151300;RAP-DB Gene Symbol Synonym(s)=CEF1%2C OsMYB103%2C OsMYB103L%2C CEF1/OsMYB103L;RAP-DB Gene Name Synonym(s)=CULM EASILY FRAGILE 1%2C myb transcription factor 103%2C transcription factor MYB103%2C Oryza sativa MYB103 Like%2C culm easily fragile 1;CGSNL Gene Symbol=CEF1;CGSNL Gene Name=CULM EASILY FRAGILE 1;Oryzabase Gene Symbol Synonym(s)=OsMYB103%2C OsMYB103L%2C CEF1/OsMYB103L%2C MYB103%2C MYB103L;Oryzabase Gene Name Synonym(s)=myb transcription factor 103%2C transcription factor MYB103%2C Oryza sativa MYB103 Like%2C culm easily fragile 1;Note=R2R3-MYB transcription factor%2C Regulation of leaf shape%2C cellulose synthesis and mechanical strength;Transcript_evidence=AK111808;ORF_evidence=Q84PW8;GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: Chromatin binding (GO:0003682);InterPro=Homeodomain-like (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930);NIAS_FLcDNA=J013114D05;Manual Curation=June 13%2C 2014;Literature_PMID=24906444;Oryzabase=15019;TENOR=Os08t0151300-01
Chr08	irgsp1_rep	five_prime_UTR	2951156	2951372	.	-	.	Parent=Os08t0151300-01
Chr08	irgsp1_rep	CDS	2951023	2951155	.	-	0	Parent=Os08t0151300-01
Chr08	irgsp1_rep	CDS	2950730	2950859	.	-	2	Parent=Os08t0151300-01
Chr08	irgsp1_rep	CDS	2948984	2949800	.	-	1	Parent=Os08t0151300-01
Chr08	irgsp1_rep	three_prime_UTR	2948553	2948983	.	-	.	Parent=Os08t0151300-01
Chr08	irgsp1_rep	mRNA	2948553	2951314	.	-	.	ID=Os08t0151300-02;Name=Os08t0151300-02;Locus_id=Os08g0151300;CGSNL Gene Symbol=CEF1;CGSNL Gene Name=CULM EASILY FRAGILE 1;Oryzabase Gene Symbol Synonym(s)=OsMYB103%2C OsMYB103L%2C CEF1/OsMYB103L%2C MYB103%2C MYB103L;Oryzabase Gene Name Synonym(s)=myb transcription factor 103%2C transcription factor MYB103%2C Oryza sativa MYB103 Like%2C culm easily fragile 1;Note=Myb transcription factor domain containing protein.;Transcript_evidence=AK112117 (DDBJ%2C Best hit);ORF_evidence=NP_176575.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=002-129-C03;Oryzabase=15019;TENOR=Os08t0151300-02
Chr08	irgsp1_rep	five_prime_UTR	2951156	2951314	.	-	.	Parent=Os08t0151300-02
Chr08	irgsp1_rep	CDS	2951023	2951155	.	-	0	Parent=Os08t0151300-02
Chr08	irgsp1_rep	CDS	2950730	2950859	.	-	2	Parent=Os08t0151300-02
Chr08	irgsp1_rep	CDS	2948984	2949800	.	-	1	Parent=Os08t0151300-02
Chr08	irgsp1_rep	three_prime_UTR	2948553	2948983	.	-	.	Parent=Os08t0151300-02
Chr08	irgsp1_rep	mRNA	2965682	2967788	.	+	.	ID=Os08t0151400-01;Name=Os08t0151400-01;Locus_id=Os08g0151400;Oryzabase Gene Name Synonym(s)=Sm gene%2C Sm family protein;Note=Similar to Small nuclear ribonucleoprotein homolog.;Transcript_evidence=AK059440 (DDBJ%2C Best hit);ORF_evidence=C3SAD8 (UniProt);InterPro=Like-Sm ribonucleoprotein (LSM) domain (IPR001163),Like-Sm ribonucleoprotein (LSM) domain%2C eukaryotic/archaea-type (IPR006649),Like-Sm ribonucleoprotein (LSM)-related domain (IPR010920);NIAS_FLcDNA=001-027-H06;Oryzabase=15654;Expression=AK059440;TENOR=Os08t0151400-01;KEGG=Os08t0151400-01
Chr08	irgsp1_rep	five_prime_UTR	2965682	2965682	.	+	.	Parent=Os08t0151400-01
Chr08	irgsp1_rep	CDS	2965683	2965742	.	+	0	Parent=Os08t0151400-01
Chr08	irgsp1_rep	CDS	2967215	2967293	.	+	0	Parent=Os08t0151400-01
Chr08	irgsp1_rep	CDS	2967382	2967427	.	+	2	Parent=Os08t0151400-01
Chr08	irgsp1_rep	CDS	2967514	2967523	.	+	1	Parent=Os08t0151400-01
Chr08	irgsp1_rep	three_prime_UTR	2967524	2967788	.	+	.	Parent=Os08t0151400-01
Chr08	irgsp1_rep	mRNA	2968200	2968516	.	-	.	ID=Os08t0151500-00;Name=Os08t0151500-00;Locus_id=Os08g0151500;Note=Non-protein coding transcript.;Transcript_evidence=CT835980 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os08t0151500-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	exon	2968200	2968516	.	-	.	Parent=Os08t0151500-00
Chr08	irgsp1_rep	mRNA	2969306	2971760	.	+	.	ID=Os08t0151600-01;Name=Os08t0151600-01;Locus_id=Os08g0151600;Oryzabase Gene Name Synonym(s)=Small nuclear ribonucleoprotein E;Note=Conserved hypothetical protein.;Transcript_evidence=AK062415 (DDBJ%2C Best hit);ORF_evidence=A3BPP0 (UniProt);NIAS_FLcDNA=001-102-F06;Oryzabase=17709;Expression=AK062415;TENOR=Os08t0151600-01;KEGG=Os08t0151600-01
Chr08	irgsp1_rep	five_prime_UTR	2969306	2969350	.	+	.	Parent=Os08t0151600-01
Chr08	irgsp1_rep	CDS	2969351	2969884	.	+	0	Parent=Os08t0151600-01
Chr08	irgsp1_rep	CDS	2971279	2971491	.	+	0	Parent=Os08t0151600-01
Chr08	irgsp1_rep	three_prime_UTR	2971492	2971760	.	+	.	Parent=Os08t0151600-01
Chr08	irgsp1_rep	mRNA	2972601	2976414	.	+	.	ID=Os08t0151700-01;Name=Os08t0151700-01;Locus_id=Os08g0151700;CGSNL Gene Symbol=DLN202;CGSNL Gene Name=DLN REPRESSOR 202;Oryzabase Gene Symbol Synonym(s)=OsDLN202;Oryzabase Gene Name Synonym(s)=DLN repressor 202%2C DLN motif protein 202;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK073149 (DDBJ%2C Best hit);ORF_evidence=C3SAE1 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-type%2C conserved site (IPR019786);NIAS_FLcDNA=J033010L07;Oryzabase=23224;Expression=AK073149;TENOR=Os08t0151700-01;KEGG=Os08t0151700-01
Chr08	irgsp1_rep	five_prime_UTR	2972601	2972705	.	+	.	Parent=Os08t0151700-01
Chr08	irgsp1_rep	CDS	2972706	2972821	.	+	0	Parent=Os08t0151700-01
Chr08	irgsp1_rep	CDS	2972905	2973191	.	+	1	Parent=Os08t0151700-01
Chr08	irgsp1_rep	CDS	2973291	2973394	.	+	2	Parent=Os08t0151700-01
Chr08	irgsp1_rep	CDS	2973471	2973553	.	+	0	Parent=Os08t0151700-01
Chr08	irgsp1_rep	CDS	2973650	2973766	.	+	1	Parent=Os08t0151700-01
Chr08	irgsp1_rep	CDS	2974429	2974531	.	+	1	Parent=Os08t0151700-01
Chr08	irgsp1_rep	CDS	2974603	2975272	.	+	0	Parent=Os08t0151700-01
Chr08	irgsp1_rep	CDS	2975583	2975770	.	+	2	Parent=Os08t0151700-01
Chr08	irgsp1_rep	CDS	2975873	2975965	.	+	0	Parent=Os08t0151700-01
Chr08	irgsp1_rep	three_prime_UTR	2975966	2976414	.	+	.	Parent=Os08t0151700-01
Chr08	irgsp1_rep	mRNA	2977391	2982261	.	+	.	ID=Os08t0151800-01;Name=Os08t0151800-01;Locus_id=Os08g0151800;CGSNL Gene Symbol=MDHAR5;CGSNL Gene Name=MONODEHYDROASCORBATE REDUCTASE 5;Oryzabase Gene Symbol Synonym(s)=OsMDAR5%2C MDAR5%2C OsMDHAR5;Oryzabase Gene Name Synonym(s)=monodehydroascorbate reductase 5;Note=FAD-dependent pyridine nucleotide-disulphide oxidoreductase domain containing protein.;Transcript_evidence=AK099848 (DDBJ%2C Best hit);ORF_evidence=Q9SPM2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Pyridine nucleotide-disulphide oxidoreductase%2C NAD-binding domain (IPR001327),FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR013027),Pyridine nucleotide-disulphide oxidoreductase%2C FAD/NAD(P)-binding domain (IPR023753);NIAS_FLcDNA=J013109H24;Oryzabase=19053;Expression=AK099848;TENOR=Os08t0151800-01;KEGG=Os08t0151800-01 (EC:1.6.5.4)
Chr08	irgsp1_rep	five_prime_UTR	2977391	2977583	.	+	.	Parent=Os08t0151800-01
Chr08	irgsp1_rep	five_prime_UTR	2977672	2977704	.	+	.	Parent=Os08t0151800-01
Chr08	irgsp1_rep	CDS	2977705	2977868	.	+	0	Parent=Os08t0151800-01
Chr08	irgsp1_rep	CDS	2978028	2978127	.	+	1	Parent=Os08t0151800-01
Chr08	irgsp1_rep	CDS	2978329	2978406	.	+	0	Parent=Os08t0151800-01
Chr08	irgsp1_rep	CDS	2978698	2978769	.	+	0	Parent=Os08t0151800-01
Chr08	irgsp1_rep	CDS	2978857	2978975	.	+	0	Parent=Os08t0151800-01
Chr08	irgsp1_rep	CDS	2979202	2979286	.	+	1	Parent=Os08t0151800-01
Chr08	irgsp1_rep	CDS	2979440	2979529	.	+	0	Parent=Os08t0151800-01
Chr08	irgsp1_rep	CDS	2979612	2979713	.	+	0	Parent=Os08t0151800-01
Chr08	irgsp1_rep	CDS	2979792	2979881	.	+	0	Parent=Os08t0151800-01
Chr08	irgsp1_rep	CDS	2980218	2980298	.	+	0	Parent=Os08t0151800-01
Chr08	irgsp1_rep	CDS	2980855	2980926	.	+	0	Parent=Os08t0151800-01
Chr08	irgsp1_rep	CDS	2981006	2981100	.	+	0	Parent=Os08t0151800-01
Chr08	irgsp1_rep	CDS	2981175	2981263	.	+	1	Parent=Os08t0151800-01
Chr08	irgsp1_rep	CDS	2981360	2981422	.	+	2	Parent=Os08t0151800-01
Chr08	irgsp1_rep	CDS	2981505	2981548	.	+	2	Parent=Os08t0151800-01
Chr08	irgsp1_rep	CDS	2981898	2982029	.	+	0	Parent=Os08t0151800-01
Chr08	irgsp1_rep	three_prime_UTR	2982030	2982261	.	+	.	Parent=Os08t0151800-01
Chr08	irgsp1_rep	mRNA	2984748	2986773	.	+	.	ID=Os08t0151900-00;Name=Os08t0151900-00;Locus_id=Os08g0151900;CGSNL Gene Symbol=NIP3%3B4;CGSNL Gene Name=NOD26 LIKE INTRINSIC PROTEIN 3%3B4;Oryzabase Gene Symbol Synonym(s)=OsNIP3%3B4%2C NIP3-4;Oryzabase Gene Name Synonym(s)=Aquaporin NIP3-4%2C NOD26-like intrinsic protein 3-4;Note=Similar to Aquaporin NIP3-3.;Transcript_evidence=EU972991 (DDBJ);ORF_evidence=Q84S07 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Major intrinsic protein%2C conserved site (IPR022357),Aquaporin-like (IPR023271);Oryzabase=19069;TENOR=Os08t0151900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	2984748	2984759	.	+	.	Parent=Os08t0151900-00
Chr08	irgsp1_rep	CDS	2984760	2985192	.	+	0	Parent=Os08t0151900-00
Chr08	irgsp1_rep	CDS	2986458	2986513	.	+	2	Parent=Os08t0151900-00
Chr08	irgsp1_rep	CDS	2986615	2986773	.	+	0	Parent=Os08t0151900-00
Chr08	irgsp1_rep	mRNA	2989266	2991016	.	+	.	ID=Os08t0152000-01;Name=Os08t0152000-01;Locus_id=Os08g0152000;RAP-DB Gene Symbol Synonym(s)=NIP3%3B2%2C OsNIP3%3B2;RAP-DB Gene Name Synonym(s)=NOD26 LIKE INTRINSIC PROTEIN 3%3B2;CGSNL Gene Symbol=NIP3%3B2;CGSNL Gene Name=NOD26 LIKE INTRINSIC PROTEIN 3%3B2;Oryzabase Gene Symbol Synonym(s)=OsNIP3%3B2%2C NIP3-2%2C OsNIP3.2%2C NIP3.2;Oryzabase Gene Name Synonym(s)=Aquaporin NIP3-2%2C NOD26-like intrinsic protein 3-2;Note=Nodulin 26-like intrinsic membrane protein%2C Arsenite (As(III)) uptake by lateral roots;Transcript_evidence=Inferred from literature;ORF_evidence=Q7EYH7;GO=Biological Process: transport (GO:0006810),Molecular Function: transporter activity (GO:0005215),Cellular Component: membrane (GO:0016020);InterPro=Major intrinsic protein (IPR000425),Aquaporin transporter (IPR034294),Aquaporin-like (IPR023271),Major intrinsic protein%2C conserved site (IPR022357);Manual Curation=May 23%2C 2017;Literature_PMID=28505352;Oryzabase=8524;TENOR=Os08t0152000-00;Subcellular location=plasma membrane (GO:0005886)
Chr08	irgsp1_rep	five_prime_UTR	2989266	2989649	.	+	.	Parent=Os08t0152000-01
Chr08	irgsp1_rep	CDS	2989650	2989937	.	+	0	Parent=Os08t0152000-01
Chr08	irgsp1_rep	CDS	2990041	2990460	.	+	0	Parent=Os08t0152000-01
Chr08	irgsp1_rep	CDS	2990574	2990635	.	+	0	Parent=Os08t0152000-01
Chr08	irgsp1_rep	CDS	2990869	2991016	.	+	1	Parent=Os08t0152000-01
Chr08	irgsp1_rep	mRNA	2997031	2998457	.	+	.	ID=Os08t0152100-01;Name=Os08t0152100-01;Locus_id=Os08g0152100;RAP-DB Gene Symbol Synonym(s)=OsNIP3%3B3;RAP-DB Gene Name Synonym(s)=Nodulin26-like Intrinsic Protein 3%3B3;CGSNL Gene Symbol=NIP3%3B3;CGSNL Gene Name=NOD26 LIKE INTRINSIC PROTEIN 3%3B3;Oryzabase Gene Symbol Synonym(s)=OsNIP3%3B3%2C NIP3-3%2C OsNIP3.3%2C NIP3.3;Oryzabase Gene Name Synonym(s)=Aquaporin NIP3-3%2C NOD26-like intrinsic protein 3-3;Note=A member of the Nodulin26-like Intrinsic Protein (NIP) family%2C Arsenite transporter;Transcript_evidence=Inferred from literature;ORF_evidence=Q84S07;GO=Biological Process: transmembrane transport (GO:0055085),Molecular Function: channel activity (GO:0015267),Cellular Component: membrane (GO:0016020);InterPro=Aquaporin-like (IPR023271),Major intrinsic protein (IPR000425),Major intrinsic protein%2C conserved site (IPR022357);Manual Curation=May 18%2C 2018;Literature_PMID=29749629;Oryzabase=8525;TENOR=Os08t0152100-00;Subcellular location=plasma membrane (GO:0005886)
Chr08	irgsp1_rep	CDS	2997031	2997237	.	+	0	Parent=Os08t0152100-01
Chr08	irgsp1_rep	CDS	2997610	2998029	.	+	0	Parent=Os08t0152100-01
Chr08	irgsp1_rep	CDS	2998127	2998188	.	+	0	Parent=Os08t0152100-01
Chr08	irgsp1_rep	CDS	2998310	2998457	.	+	1	Parent=Os08t0152100-01
Chr08	irgsp1_rep	mRNA	3000430	3001833	.	-	.	ID=Os08t0152300-00;Name=Os08t0152300-00;Locus_id=Os08g0152300;Note=Similar to P450.;Transcript_evidence=ab initio prediction;ORF_evidence=C3SAE5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os08t0152300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	3000430	3001833	.	-	0	Parent=Os08t0152300-00
Chr08	irgsp1_rep	mRNA	3000453	3001833	.	+	.	ID=Os08t0152333-00;Name=Os08t0152333-00;Locus_id=Os08g0152333;Note=Hypothetical protein.;Transcript_evidence=AK357549 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0152333-00
Chr08	irgsp1_rep	five_prime_UTR	3000453	3001147	.	+	.	Parent=Os08t0152333-00
Chr08	irgsp1_rep	CDS	3001148	3001816	.	+	0	Parent=Os08t0152333-00
Chr08	irgsp1_rep	three_prime_UTR	3001817	3001833	.	+	.	Parent=Os08t0152333-00
Chr08	irgsp1_rep	mRNA	3007271	3008757	.	-	.	ID=Os08t0152366-00;Name=Os08t0152366-00;Locus_id=Os08g0152366;Note=Hypothetical protein.;Transcript_evidence=AK357549 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0152366-00
Chr08	irgsp1_rep	five_prime_UTR	3008354	3008757	.	-	.	Parent=Os08t0152366-00
Chr08	irgsp1_rep	CDS	3007271	3008353	.	-	0	Parent=Os08t0152366-00
Chr08	irgsp1_rep	mRNA	3008402	3009236	.	+	.	ID=Os08t0152400-00;Name=Os08t0152400-00;Locus_id=Os08g0152400;Note=Similar to P450.;Transcript_evidence=CT828230 (DDBJ%2C Best hit);ORF_evidence=C3SAE5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os08t0152400-00;KEGG=Os08t0152400-00
Chr08	irgsp1_rep	CDS	3008402	3008791	.	+	0	Parent=Os08t0152400-00
Chr08	irgsp1_rep	three_prime_UTR	3008792	3008907	.	+	.	Parent=Os08t0152400-00
Chr08	irgsp1_rep	three_prime_UTR	3009061	3009236	.	+	.	Parent=Os08t0152400-00
Chr08	irgsp1_rep	mRNA	3009693	3012527	.	-	.	ID=Os08t0152500-01;Name=Os08t0152500-01;Locus_id=Os08g0152500;Note=Uncharacterised protein family UPF0402 domain containing protein.;Transcript_evidence=AK060448 (DDBJ%2C Best hit),AK099014 (DDBJ%2C Best hit);ORF_evidence=B8BAY5 (UniProt);InterPro=Uncharacterised protein family UPF0402 (IPR019320);NIAS_FLcDNA=001-011-F09,J013118C21;TENOR=Os08t0152500-01
Chr08	irgsp1_rep	five_prime_UTR	3012271	3012527	.	-	.	Parent=Os08t0152500-01
Chr08	irgsp1_rep	CDS	3012192	3012270	.	-	0	Parent=Os08t0152500-01
Chr08	irgsp1_rep	CDS	3011936	3012048	.	-	2	Parent=Os08t0152500-01
Chr08	irgsp1_rep	CDS	3010811	3010980	.	-	0	Parent=Os08t0152500-01
Chr08	irgsp1_rep	CDS	3009970	3010414	.	-	1	Parent=Os08t0152500-01
Chr08	irgsp1_rep	three_prime_UTR	3009693	3009969	.	-	.	Parent=Os08t0152500-01
Chr08	irgsp1_rep	mRNA	3013807	3016330	.	-	.	ID=Os08t0152600-01;Name=Os08t0152600-01;Locus_id=Os08g0152600;Note=Protein of unknown function DUF1336 domain containing protein.;Transcript_evidence=AK068444 (DDBJ%2C Best hit);ORF_evidence=C3SAE8 (UniProt);InterPro=Domain of unknown function DUF1336 (IPR009769);NIAS_FLcDNA=J013154O05;Expression=AK068444;TENOR=Os08t0152600-01;KEGG=Os08t0152600-01
Chr08	irgsp1_rep	five_prime_UTR	3016063	3016330	.	-	.	Parent=Os08t0152600-01
Chr08	irgsp1_rep	CDS	3014472	3015556	.	-	0	Parent=Os08t0152600-01
Chr08	irgsp1_rep	CDS	3014141	3014141	.	-	1	Parent=Os08t0152600-01
Chr08	irgsp1_rep	three_prime_UTR	3013807	3014140	.	-	.	Parent=Os08t0152600-01
Chr08	irgsp1_rep	mRNA	3017359	3021986	.	+	.	ID=Os08t0152700-01;Name=Os08t0152700-01;Locus_id=Os08g0152700;Note=Diacylglycerol kinase%2C catalytic region domain containing protein.;Transcript_evidence=AK065015 (DDBJ%2C Best hit);ORF_evidence=C3SAE9 (UniProt);GO=Biological Process: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway (GO:0007205),Molecular Function: diacylglycerol kinase activity (GO:0004143);InterPro=Diacylglycerol kinase%2C catalytic domain (IPR001206);NIAS_FLcDNA=J013001F10;Expression=AK065015;TENOR=Os08t0152700-01;KEGG=Os08t0152700-01
Chr08	irgsp1_rep	five_prime_UTR	3017359	3017581	.	+	.	Parent=Os08t0152700-01
Chr08	irgsp1_rep	CDS	3017582	3017590	.	+	0	Parent=Os08t0152700-01
Chr08	irgsp1_rep	CDS	3018168	3018536	.	+	0	Parent=Os08t0152700-01
Chr08	irgsp1_rep	CDS	3018756	3018849	.	+	0	Parent=Os08t0152700-01
Chr08	irgsp1_rep	CDS	3018938	3018975	.	+	2	Parent=Os08t0152700-01
Chr08	irgsp1_rep	CDS	3019206	3019352	.	+	0	Parent=Os08t0152700-01
Chr08	irgsp1_rep	CDS	3020256	3020355	.	+	0	Parent=Os08t0152700-01
Chr08	irgsp1_rep	CDS	3020959	3021386	.	+	2	Parent=Os08t0152700-01
Chr08	irgsp1_rep	CDS	3021578	3021733	.	+	0	Parent=Os08t0152700-01
Chr08	irgsp1_rep	three_prime_UTR	3021734	3021986	.	+	.	Parent=Os08t0152700-01
Chr08	irgsp1_rep	mRNA	3022668	3026892	.	-	.	ID=Os08t0152800-00;Name=Os08t0152800-00;Locus_id=Os08g0152800;Note=Similar to predicted protein.;Transcript_evidence=EU966870 (DDBJ);ORF_evidence=B9FZ40 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=TMPIT-like (IPR012926);TENOR=Os08t0152800-00;KEGG=Os08t0152800-00
Chr08	irgsp1_rep	five_prime_UTR	3026747	3026892	.	-	.	Parent=Os08t0152800-00
Chr08	irgsp1_rep	CDS	3026558	3026746	.	-	0	Parent=Os08t0152800-00
Chr08	irgsp1_rep	CDS	3026054	3026132	.	-	0	Parent=Os08t0152800-00
Chr08	irgsp1_rep	CDS	3025801	3025895	.	-	2	Parent=Os08t0152800-00
Chr08	irgsp1_rep	CDS	3024773	3024877	.	-	0	Parent=Os08t0152800-00
Chr08	irgsp1_rep	CDS	3024587	3024666	.	-	0	Parent=Os08t0152800-00
Chr08	irgsp1_rep	CDS	3024127	3024217	.	-	1	Parent=Os08t0152800-00
Chr08	irgsp1_rep	CDS	3023947	3024054	.	-	0	Parent=Os08t0152800-00
Chr08	irgsp1_rep	CDS	3023666	3023752	.	-	0	Parent=Os08t0152800-00
Chr08	irgsp1_rep	CDS	3023307	3023375	.	-	0	Parent=Os08t0152800-00
Chr08	irgsp1_rep	CDS	3023049	3023228	.	-	0	Parent=Os08t0152800-00
Chr08	irgsp1_rep	three_prime_UTR	3022668	3023048	.	-	.	Parent=Os08t0152800-00
Chr08	irgsp1_rep	mRNA	3031282	3038465	.	-	.	ID=Os08t0152900-01;Name=Os08t0152900-01;Locus_id=Os08g0152900;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK065666 (DDBJ%2C Best hit);ORF_evidence=B8BAY7 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013040B10;TENOR=Os08t0152900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	3038465	3038465	.	-	.	Parent=Os08t0152900-01
Chr08	irgsp1_rep	CDS	3038423	3038464	.	-	0	Parent=Os08t0152900-01
Chr08	irgsp1_rep	CDS	3037314	3037493	.	-	0	Parent=Os08t0152900-01
Chr08	irgsp1_rep	CDS	3036507	3036758	.	-	0	Parent=Os08t0152900-01
Chr08	irgsp1_rep	CDS	3036043	3036138	.	-	0	Parent=Os08t0152900-01
Chr08	irgsp1_rep	CDS	3035834	3035928	.	-	0	Parent=Os08t0152900-01
Chr08	irgsp1_rep	CDS	3035670	3035733	.	-	1	Parent=Os08t0152900-01
Chr08	irgsp1_rep	CDS	3035470	3035551	.	-	0	Parent=Os08t0152900-01
Chr08	irgsp1_rep	CDS	3035312	3035382	.	-	2	Parent=Os08t0152900-01
Chr08	irgsp1_rep	CDS	3035048	3035133	.	-	0	Parent=Os08t0152900-01
Chr08	irgsp1_rep	CDS	3034880	3034964	.	-	1	Parent=Os08t0152900-01
Chr08	irgsp1_rep	CDS	3034378	3034451	.	-	0	Parent=Os08t0152900-01
Chr08	irgsp1_rep	CDS	3033478	3033584	.	-	1	Parent=Os08t0152900-01
Chr08	irgsp1_rep	CDS	3032974	3033092	.	-	2	Parent=Os08t0152900-01
Chr08	irgsp1_rep	CDS	3032772	3032849	.	-	0	Parent=Os08t0152900-01
Chr08	irgsp1_rep	CDS	3031921	3032154	.	-	0	Parent=Os08t0152900-01
Chr08	irgsp1_rep	three_prime_UTR	3031282	3031920	.	-	.	Parent=Os08t0152900-01
Chr08	irgsp1_rep	mRNA	3054487	3056073	.	+	.	ID=Os08t0153000-00;Name=Os08t0153000-00;Locus_id=Os08g0153000;CGSNL Gene Symbol=MDR15;CGSNL Gene Name=MULTIDRUG RESISTANCE 15;Oryzabase Gene Symbol Synonym(s)=OsABCB20%2C ABCB20%2C OsPGP20%2C OsMDR15;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCB subgroup member 20%2C P-Glycoprotein 20%2C multidrug resistance 15;Note=Similar to MDR-like ABC transporter.;Transcript_evidence=BT036770 (DDBJ);ORF_evidence=Q8GU79 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);Oryzabase=11939;TENOR=Os08t0153000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	3054487	3056073	.	+	0	Parent=Os08t0153000-00
Chr08	irgsp1_rep	mRNA	3051146	3052511	.	-	.	ID=Os08t0153101-00;Name=Os08t0153101-00;Locus_id=Os08g0153101;Note=Non-protein coding transcript.;Transcript_evidence=BT067435 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0153101-00
Chr08	irgsp1_rep	exon	3052262	3052511	.	-	.	Parent=Os08t0153101-00
Chr08	irgsp1_rep	exon	3051146	3051816	.	-	.	Parent=Os08t0153101-00
Chr08	irgsp1_rep	mRNA	3063052	3064289	.	-	.	ID=Os08t0153225-00;Name=Os08t0153225-00;Locus_id=Os08g0153225;Note=Non-protein coding transcript.;Transcript_evidence=BT067435 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0153225-00
Chr08	irgsp1_rep	exon	3063881	3064289	.	-	.	Parent=Os08t0153225-00
Chr08	irgsp1_rep	exon	3063052	3063619	.	-	.	Parent=Os08t0153225-00
Chr08	irgsp1_rep	mRNA	3068448	3068681	.	-	.	ID=Os08t0153250-00;Name=Os08t0153250-00;Locus_id=Os08g0153250;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os08t0153250-00;KEGG=Os08t0153250-00
Chr08	irgsp1_rep	CDS	3068448	3068681	.	-	0	Parent=Os08t0153250-00
Chr08	irgsp1_rep	mRNA	3082739	3086311	.	-	.	ID=Os08t0153600-00;Name=Os08t0153600-00;Locus_id=Os08g0153600;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK369927 (DDBJ);ORF_evidence=NP_001061009.2 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os08t0153600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	3085703	3086311	.	-	0	Parent=Os08t0153600-00
Chr08	irgsp1_rep	CDS	3082739	3084442	.	-	0	Parent=Os08t0153600-00
Chr08	irgsp1_rep	mRNA	3082738	3086049	.	+	.	ID=Os08t0153700-00;Name=Os08t0153700-00;Locus_id=Os08g0153700;Note=Hypothetical protein.;Transcript_evidence=tplb0021n11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0153700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	3082738	3083107	.	+	.	Parent=Os08t0153700-00
Chr08	irgsp1_rep	CDS	3083108	3083335	.	+	0	Parent=Os08t0153700-00
Chr08	irgsp1_rep	three_prime_UTR	3083336	3083922	.	+	.	Parent=Os08t0153700-00
Chr08	irgsp1_rep	three_prime_UTR	3084120	3084535	.	+	.	Parent=Os08t0153700-00
Chr08	irgsp1_rep	three_prime_UTR	3085850	3086049	.	+	.	Parent=Os08t0153700-00
Chr08	irgsp1_rep	mRNA	3089164	3089635	.	+	.	ID=Os08t0153750-00;Name=Os08t0153750-00;Locus_id=Os08g0153750;Note=Hypothetical protein.;Transcript_evidence=AK375422 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0153750-00
Chr08	irgsp1_rep	CDS	3089164	3089635	.	+	0	Parent=Os08t0153750-00
Chr08	irgsp1_rep	mRNA	3093804	3094878	.	-	.	ID=Os08t0153900-01;Name=Os08t0153900-01;Locus_id=Os08g0153900;Note=Protein of unknown function DUF599 family protein.;Transcript_evidence=AK241707 (DDBJ%2C Best hit);ORF_evidence=NP_001061011.1 (RefSeq);InterPro=Protein of unknown function DUF599 (IPR006747);NIAS_FLcDNA=J065196P16;TENOR=Os08t0153900-01;KEGG=Os08t0153900-01
Chr08	irgsp1_rep	five_prime_UTR	3094806	3094878	.	-	.	Parent=Os08t0153900-01
Chr08	irgsp1_rep	CDS	3093975	3094805	.	-	0	Parent=Os08t0153900-01
Chr08	irgsp1_rep	three_prime_UTR	3093804	3093974	.	-	.	Parent=Os08t0153900-01
Chr08	irgsp1_rep	mRNA	3102013	3105084	.	+	.	ID=Os08t0154000-01;Name=Os08t0154000-01;Locus_id=Os08g0154000;Note=O-methyltransferase%2C family 3 protein.;Transcript_evidence=AK063541 (DDBJ%2C Best hit);ORF_evidence=B6TR72 (UniProt);GO=Molecular Function: O-methyltransferase activity (GO:0008171);InterPro=O-methyltransferase%2C family 3 (IPR002935);NIAS_FLcDNA=001-117-C06;Expression=AK063541;TENOR=Os08t0154000-01;KEGG=Os08t0154000-01
Chr08	irgsp1_rep	five_prime_UTR	3102013	3102027	.	+	.	Parent=Os08t0154000-01
Chr08	irgsp1_rep	CDS	3102028	3102339	.	+	0	Parent=Os08t0154000-01
Chr08	irgsp1_rep	CDS	3102478	3102531	.	+	0	Parent=Os08t0154000-01
Chr08	irgsp1_rep	CDS	3102751	3102834	.	+	0	Parent=Os08t0154000-01
Chr08	irgsp1_rep	CDS	3103316	3103441	.	+	0	Parent=Os08t0154000-01
Chr08	irgsp1_rep	CDS	3103518	3103585	.	+	0	Parent=Os08t0154000-01
Chr08	irgsp1_rep	CDS	3103668	3103737	.	+	1	Parent=Os08t0154000-01
Chr08	irgsp1_rep	CDS	3103941	3104006	.	+	0	Parent=Os08t0154000-01
Chr08	irgsp1_rep	CDS	3104118	3104195	.	+	0	Parent=Os08t0154000-01
Chr08	irgsp1_rep	CDS	3104748	3104798	.	+	0	Parent=Os08t0154000-01
Chr08	irgsp1_rep	three_prime_UTR	3104799	3105084	.	+	.	Parent=Os08t0154000-01
Chr08	irgsp1_rep	mRNA	3113598	3115221	.	-	.	ID=Os08t0154200-01;Name=Os08t0154200-01;Locus_id=Os08g0154200;Oryzabase Gene Symbol Synonym(s)=OsRH45;Oryzabase Gene Name Synonym(s)=RNA helicase 45;Note=Similar to DEAD-box ATP-dependent RNA helicase 45.;Transcript_evidence=AK103192 (DDBJ%2C Best hit);ORF_evidence=Q9SF41 (UniProt);NIAS_FLcDNA=J033121O14;Oryzabase=19152;Expression=AK103192;TENOR=Os08t0154200-01;KEGG=Os08t0154200-01 (EC:3.6.4.13)
Chr08	irgsp1_rep	five_prime_UTR	3115221	3115221	.	-	.	Parent=Os08t0154200-01
Chr08	irgsp1_rep	CDS	3114576	3115220	.	-	0	Parent=Os08t0154200-01
Chr08	irgsp1_rep	three_prime_UTR	3114521	3114575	.	-	.	Parent=Os08t0154200-01
Chr08	irgsp1_rep	three_prime_UTR	3113922	3114118	.	-	.	Parent=Os08t0154200-01
Chr08	irgsp1_rep	three_prime_UTR	3113598	3113829	.	-	.	Parent=Os08t0154200-01
Chr08	irgsp1_rep	mRNA	3115509	3117296	.	-	.	ID=Os08t0154225-00;Name=Os08t0154225-00;Locus_id=Os08g0154225;Note=DEAD-box ATP-dependent RNA helicase 42.;Transcript_evidence=Q84UQ1 (UniProt);ORF_evidence=Q8H0U8 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=RNA helicase%2C ATP-dependent%2C DEAD-box%2C conserved site (IPR000629),Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);TENOR=Os08t0154225-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	3115509	3117296	.	-	0	Parent=Os08t0154225-00
Chr08	irgsp1_rep	mRNA	3120327	3125522	.	-	.	ID=Os08t0154250-01;Name=Os08t0154250-01;Locus_id=Os08g0154250;Note=Similar to monocopper oxidase.;Transcript_evidence=AK288516 (DDBJ%2C Best hit);ORF_evidence=B6U762 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: copper ion binding (GO:0005507),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Multicopper oxidase%2C type 1 (IPR001117),Cupredoxin (IPR008972),Multicopper oxidase%2C type 2 (IPR011706),Multicopper oxidase%2C type 3 (IPR011707);NIAS_FLcDNA=J090042K19;TENOR=Os08t0154250-01;KEGG=Os08t0154250-01
Chr08	irgsp1_rep	five_prime_UTR	3125467	3125522	.	-	.	Parent=Os08t0154250-01
Chr08	irgsp1_rep	CDS	3125311	3125466	.	-	0	Parent=Os08t0154250-01
Chr08	irgsp1_rep	CDS	3124330	3124439	.	-	0	Parent=Os08t0154250-01
Chr08	irgsp1_rep	CDS	3123302	3123572	.	-	1	Parent=Os08t0154250-01
Chr08	irgsp1_rep	CDS	3122799	3122937	.	-	0	Parent=Os08t0154250-01
Chr08	irgsp1_rep	CDS	3121748	3122117	.	-	2	Parent=Os08t0154250-01
Chr08	irgsp1_rep	CDS	3121188	3121553	.	-	1	Parent=Os08t0154250-01
Chr08	irgsp1_rep	CDS	3120997	3121075	.	-	1	Parent=Os08t0154250-01
Chr08	irgsp1_rep	CDS	3120687	3120886	.	-	0	Parent=Os08t0154250-01
Chr08	irgsp1_rep	CDS	3120477	3120588	.	-	1	Parent=Os08t0154250-01
Chr08	irgsp1_rep	three_prime_UTR	3120327	3120476	.	-	.	Parent=Os08t0154250-01
Chr08	irgsp1_rep	mRNA	3121457	3124441	.	+	.	ID=Os08t0154251-00;Name=Os08t0154251-00;Locus_id=Os08g0154251;Note=Hypothetical gene.;Transcript_evidence=BT086104 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0154251-00;KEGG=Os08t0154251-00
Chr08	irgsp1_rep	five_prime_UTR	3121457	3121541	.	+	.	Parent=Os08t0154251-00
Chr08	irgsp1_rep	five_prime_UTR	3121734	3122196	.	+	.	Parent=Os08t0154251-00
Chr08	irgsp1_rep	five_prime_UTR	3122781	3123058	.	+	.	Parent=Os08t0154251-00
Chr08	irgsp1_rep	CDS	3123059	3123093	.	+	0	Parent=Os08t0154251-00
Chr08	irgsp1_rep	CDS	3123274	3123547	.	+	1	Parent=Os08t0154251-00
Chr08	irgsp1_rep	three_prime_UTR	3123548	3123571	.	+	.	Parent=Os08t0154251-00
Chr08	irgsp1_rep	three_prime_UTR	3124329	3124441	.	+	.	Parent=Os08t0154251-00
Chr08	irgsp1_rep	mRNA	3128370	3132239	.	-	.	ID=Os08t0154300-01;Name=Os08t0154300-01;Locus_id=Os08g0154300;Note=Aldolase-type TIM barrel domain containing protein.;Transcript_evidence=AK058325 (DDBJ%2C Best hit);ORF_evidence=D6N3G8 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Transaldolase (IPR001585),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=001-014-B10;Expression=AK058325;TENOR=Os08t0154300-01;KEGG=Os08t0154300-01 (EC:2.2.1.2)
Chr08	irgsp1_rep	five_prime_UTR	3132172	3132239	.	-	.	Parent=Os08t0154300-01
Chr08	irgsp1_rep	CDS	3132112	3132171	.	-	0	Parent=Os08t0154300-01
Chr08	irgsp1_rep	CDS	3131870	3131990	.	-	0	Parent=Os08t0154300-01
Chr08	irgsp1_rep	CDS	3131702	3131780	.	-	2	Parent=Os08t0154300-01
Chr08	irgsp1_rep	CDS	3131519	3131594	.	-	1	Parent=Os08t0154300-01
Chr08	irgsp1_rep	CDS	3131346	3131429	.	-	0	Parent=Os08t0154300-01
Chr08	irgsp1_rep	CDS	3131166	3131270	.	-	0	Parent=Os08t0154300-01
Chr08	irgsp1_rep	CDS	3130950	3131030	.	-	0	Parent=Os08t0154300-01
Chr08	irgsp1_rep	CDS	3130796	3130860	.	-	0	Parent=Os08t0154300-01
Chr08	irgsp1_rep	CDS	3130220	3130289	.	-	1	Parent=Os08t0154300-01
Chr08	irgsp1_rep	CDS	3130068	3130145	.	-	0	Parent=Os08t0154300-01
Chr08	irgsp1_rep	CDS	3129468	3129565	.	-	0	Parent=Os08t0154300-01
Chr08	irgsp1_rep	CDS	3129256	3129391	.	-	1	Parent=Os08t0154300-01
Chr08	irgsp1_rep	CDS	3128718	3128864	.	-	0	Parent=Os08t0154300-01
Chr08	irgsp1_rep	three_prime_UTR	3128370	3128717	.	-	.	Parent=Os08t0154300-01
Chr08	irgsp1_rep	mRNA	3128302	3132211	.	-	.	ID=Os08t0154300-02;Name=Os08t0154300-02;Locus_id=Os08g0154300;Note=Similar to Transaldolase-like protein (Fragment).;Transcript_evidence=AK101430 (DDBJ%2C Best hit);ORF_evidence=Q7XAS4 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Transaldolase (IPR001585),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J033038K01;Expression=AK101430;TENOR=Os08t0154300-02;KEGG=Os08t0154300-02 (EC:2.2.1.2)
Chr08	irgsp1_rep	five_prime_UTR	3132172	3132211	.	-	.	Parent=Os08t0154300-02
Chr08	irgsp1_rep	CDS	3132112	3132171	.	-	0	Parent=Os08t0154300-02
Chr08	irgsp1_rep	CDS	3131870	3131990	.	-	0	Parent=Os08t0154300-02
Chr08	irgsp1_rep	CDS	3131702	3131780	.	-	2	Parent=Os08t0154300-02
Chr08	irgsp1_rep	CDS	3131519	3131594	.	-	1	Parent=Os08t0154300-02
Chr08	irgsp1_rep	CDS	3131346	3131429	.	-	0	Parent=Os08t0154300-02
Chr08	irgsp1_rep	CDS	3131166	3131270	.	-	0	Parent=Os08t0154300-02
Chr08	irgsp1_rep	CDS	3130950	3131030	.	-	0	Parent=Os08t0154300-02
Chr08	irgsp1_rep	CDS	3130768	3130860	.	-	0	Parent=Os08t0154300-02
Chr08	irgsp1_rep	three_prime_UTR	3130220	3130767	.	-	.	Parent=Os08t0154300-02
Chr08	irgsp1_rep	three_prime_UTR	3130068	3130145	.	-	.	Parent=Os08t0154300-02
Chr08	irgsp1_rep	three_prime_UTR	3128302	3129565	.	-	.	Parent=Os08t0154300-02
Chr08	irgsp1_rep	mRNA	3136760	3142805	.	+	.	ID=Os08t0154600-01;Name=Os08t0154600-01;Locus_id=Os08g0154600;RAP-DB Gene Symbol Synonym(s)=OsTOP1;RAP-DB Gene Name Synonym(s)=DNA topoisomerase 1;CGSNL Gene Symbol=TOP1;CGSNL Gene Name=TOPOISOMERASE 1;Oryzabase Gene Symbol Synonym(s)=OsTOP1;Oryzabase Gene Name Synonym(s)=topoisomerase I%2C type I topoisomerase%2C topoisomerase 1;Note=DNA Topoisomerase 1%2C Modulation of auxin-regulated root development and gravitropism;Transcript_evidence=AK070325;ORF_evidence=Q84ZL5;GO=Biological Process: DNA topological change (GO:0006265),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA topoisomerase type I activity (GO:0003917),Cellular Component: Chromosome (GO:0005694);InterPro=DNA topoisomerase I (IPR001631),DNA topoisomerase I%2C DNA binding%2C eukaryotic-type (IPR008336),DNA topoisomerase I%2C domain 1 (IPR013034),DNA topoisomerase I%2C DNA binding%2C mixed alpha/beta motif%2C eukaryotic-type (IPR013030),DNA topoisomerase I%2C eukaryotic-type (IPR013499),DNA topoisomerase I%2C catalytic core%2C alpha-helical subdomain%2C eukaryotic-type (IPR014711),DNA breaking-rejoining enzyme%2C catalytic core (IPR011010),DNA topoisomerase I%2C catalytic core%2C eukaryotic-type (IPR013500),DNA topoisomerase I%2C catalytic core%2C alpha/beta subdomain (IPR014727),Topoisomerase I C-terminal domain (IPR025834),DNA topoisomerase I%2C active site (IPR018521);NIAS_FLcDNA=J023050A13, J023050E19;Manual Curation=June 14%2C 2017;Literature_PMID=28412545;Oryzabase=21301;TENOR=Os08t0154600-01
Chr08	irgsp1_rep	five_prime_UTR	3136760	3136972	.	+	.	Parent=Os08t0154600-01
Chr08	irgsp1_rep	five_prime_UTR	3137503	3137557	.	+	.	Parent=Os08t0154600-01
Chr08	irgsp1_rep	CDS	3137558	3138787	.	+	0	Parent=Os08t0154600-01
Chr08	irgsp1_rep	CDS	3138928	3139122	.	+	0	Parent=Os08t0154600-01
Chr08	irgsp1_rep	CDS	3139236	3139316	.	+	0	Parent=Os08t0154600-01
Chr08	irgsp1_rep	CDS	3139668	3139727	.	+	0	Parent=Os08t0154600-01
Chr08	irgsp1_rep	CDS	3139810	3139904	.	+	0	Parent=Os08t0154600-01
Chr08	irgsp1_rep	CDS	3140004	3140160	.	+	1	Parent=Os08t0154600-01
Chr08	irgsp1_rep	CDS	3140240	3140365	.	+	0	Parent=Os08t0154600-01
Chr08	irgsp1_rep	CDS	3140742	3140822	.	+	0	Parent=Os08t0154600-01
Chr08	irgsp1_rep	CDS	3140901	3140991	.	+	0	Parent=Os08t0154600-01
Chr08	irgsp1_rep	CDS	3141079	3141212	.	+	2	Parent=Os08t0154600-01
Chr08	irgsp1_rep	CDS	3141412	3141480	.	+	0	Parent=Os08t0154600-01
Chr08	irgsp1_rep	CDS	3141563	3141652	.	+	0	Parent=Os08t0154600-01
Chr08	irgsp1_rep	CDS	3141749	3141852	.	+	0	Parent=Os08t0154600-01
Chr08	irgsp1_rep	CDS	3141938	3142106	.	+	1	Parent=Os08t0154600-01
Chr08	irgsp1_rep	CDS	3142410	3142478	.	+	0	Parent=Os08t0154600-01
Chr08	irgsp1_rep	three_prime_UTR	3142479	3142805	.	+	.	Parent=Os08t0154600-01
Chr08	irgsp1_rep	mRNA	3141961	3142768	.	-	.	ID=Os08t0154650-00;Name=Os08t0154650-00;Locus_id=Os08g0154650;Note=Non-protein coding transcript.;Transcript_evidence=BT017514 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0154650-00
Chr08	irgsp1_rep	exon	3142408	3142768	.	-	.	Parent=Os08t0154650-00
Chr08	irgsp1_rep	exon	3141961	3142104	.	-	.	Parent=Os08t0154650-00
Chr08	irgsp1_rep	mRNA	3146548	3149925	.	+	.	ID=Os08t0154700-01;Name=Os08t0154700-01;Locus_id=Os08g0154700;Note=U6 snRNA-associated Sm-like protein LSm2 domain containing protein.;Transcript_evidence=AK243045 (DDBJ%2C Best hit);ORF_evidence=B6UER1 (UniProt);InterPro=Like-Sm ribonucleoprotein (LSM) domain (IPR001163),Like-Sm ribonucleoprotein (LSM) domain%2C eukaryotic/archaea-type (IPR006649),Like-Sm ribonucleoprotein (LSM)-related domain (IPR010920),U6 snRNA-associated Sm-like protein LSm2 (IPR016654);NIAS_FLcDNA=J100009E11;TENOR=Os08t0154700-01;KEGG=Os08t0154700-01
Chr08	irgsp1_rep	five_prime_UTR	3146548	3146668	.	+	.	Parent=Os08t0154700-01
Chr08	irgsp1_rep	five_prime_UTR	3146915	3146953	.	+	.	Parent=Os08t0154700-01
Chr08	irgsp1_rep	CDS	3146954	3146956	.	+	0	Parent=Os08t0154700-01
Chr08	irgsp1_rep	CDS	3147086	3147244	.	+	0	Parent=Os08t0154700-01
Chr08	irgsp1_rep	CDS	3149619	3149738	.	+	0	Parent=Os08t0154700-01
Chr08	irgsp1_rep	three_prime_UTR	3149739	3149925	.	+	.	Parent=Os08t0154700-01
Chr08	irgsp1_rep	mRNA	3158796	3165175	.	+	.	ID=Os08t0154900-00;Name=Os08t0154900-00;Locus_id=Os08g0154900;Note=Pleckstrin homology-type domain containing protein.;Transcript_evidence=AK333886 (DDBJ);ORF_evidence=NP_567662.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Oxysterol-binding protein (IPR000648),Pleckstrin homology domain (IPR001849),Pleckstrin homology-type (IPR011993);TENOR=Os08t0154900-00;KEGG=Os08t0154900-00
Chr08	irgsp1_rep	five_prime_UTR	3158796	3158826	.	+	.	Parent=Os08t0154900-00
Chr08	irgsp1_rep	CDS	3158827	3159201	.	+	0	Parent=Os08t0154900-00
Chr08	irgsp1_rep	CDS	3160837	3161199	.	+	0	Parent=Os08t0154900-00
Chr08	irgsp1_rep	CDS	3161477	3161555	.	+	0	Parent=Os08t0154900-00
Chr08	irgsp1_rep	CDS	3161817	3162223	.	+	2	Parent=Os08t0154900-00
Chr08	irgsp1_rep	CDS	3162686	3162841	.	+	0	Parent=Os08t0154900-00
Chr08	irgsp1_rep	CDS	3163072	3163239	.	+	0	Parent=Os08t0154900-00
Chr08	irgsp1_rep	CDS	3163335	3163475	.	+	0	Parent=Os08t0154900-00
Chr08	irgsp1_rep	CDS	3164083	3164310	.	+	0	Parent=Os08t0154900-00
Chr08	irgsp1_rep	CDS	3164407	3164520	.	+	0	Parent=Os08t0154900-00
Chr08	irgsp1_rep	CDS	3164637	3164792	.	+	0	Parent=Os08t0154900-00
Chr08	irgsp1_rep	three_prime_UTR	3164793	3165175	.	+	.	Parent=Os08t0154900-00
Chr08	irgsp1_rep	mRNA	3158857	3164773	.	-	.	ID=Os08t0154950-00;Name=Os08t0154950-00;Locus_id=Os08g0154950;Note=Hypothetical protein.;Transcript_evidence=tplb0022l14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0154950-00
Chr08	irgsp1_rep	five_prime_UTR	3164655	3164773	.	-	.	Parent=Os08t0154950-00
Chr08	irgsp1_rep	five_prime_UTR	3164369	3164533	.	-	.	Parent=Os08t0154950-00
Chr08	irgsp1_rep	five_prime_UTR	3164081	3164275	.	-	.	Parent=Os08t0154950-00
Chr08	irgsp1_rep	five_prime_UTR	3163340	3163472	.	-	.	Parent=Os08t0154950-00
Chr08	irgsp1_rep	five_prime_UTR	3163043	3163241	.	-	.	Parent=Os08t0154950-00
Chr08	irgsp1_rep	five_prime_UTR	3162692	3162809	.	-	.	Parent=Os08t0154950-00
Chr08	irgsp1_rep	five_prime_UTR	3161696	3162190	.	-	.	Parent=Os08t0154950-00
Chr08	irgsp1_rep	five_prime_UTR	3160827	3161180	.	-	.	Parent=Os08t0154950-00
Chr08	irgsp1_rep	CDS	3160820	3160826	.	-	0	Parent=Os08t0154950-00
Chr08	irgsp1_rep	CDS	3158857	3159191	.	-	2	Parent=Os08t0154950-00
Chr08	irgsp1_rep	mRNA	3166823	3170553	.	-	.	ID=Os08t0155000-01;Name=Os08t0155000-01;Locus_id=Os08g0155000;Note=Similar to predicted protein.;Transcript_evidence=AK060859 (DDBJ%2C Best hit);ORF_evidence=NP_176564.1 (RefSeq);GO=Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: ATP binding (GO:0005524);InterPro=Anticodon-binding (IPR004154),Brix domain (IPR007109);NIAS_FLcDNA=001-034-F07;Expression=AK060859;TENOR=Os08t0155000-01;KEGG=Os08t0155000-01
Chr08	irgsp1_rep	five_prime_UTR	3170468	3170553	.	-	.	Parent=Os08t0155000-01
Chr08	irgsp1_rep	CDS	3170272	3170467	.	-	0	Parent=Os08t0155000-01
Chr08	irgsp1_rep	CDS	3170079	3170188	.	-	2	Parent=Os08t0155000-01
Chr08	irgsp1_rep	CDS	3169916	3169966	.	-	0	Parent=Os08t0155000-01
Chr08	irgsp1_rep	CDS	3169609	3169752	.	-	0	Parent=Os08t0155000-01
Chr08	irgsp1_rep	CDS	3169410	3169499	.	-	0	Parent=Os08t0155000-01
Chr08	irgsp1_rep	CDS	3167443	3167549	.	-	0	Parent=Os08t0155000-01
Chr08	irgsp1_rep	CDS	3167255	3167339	.	-	1	Parent=Os08t0155000-01
Chr08	irgsp1_rep	CDS	3167067	3167165	.	-	0	Parent=Os08t0155000-01
Chr08	irgsp1_rep	three_prime_UTR	3166823	3167066	.	-	.	Parent=Os08t0155000-01
Chr08	irgsp1_rep	mRNA	3166771	3170543	.	-	.	ID=Os08t0155000-02;Name=Os08t0155000-02;Locus_id=Os08g0155000;Note=Brix domain containing protein.;Transcript_evidence=AK099613 (DDBJ%2C Best hit);ORF_evidence=NP_176564.1 (RefSeq);GO=Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: ATP binding (GO:0005524);InterPro=Anticodon-binding (IPR004154),Brix domain (IPR007109);NIAS_FLcDNA=J013050A14;Expression=AK099613;TENOR=Os08t0155000-02;KEGG=Os08t0155000-02
Chr08	irgsp1_rep	five_prime_UTR	3170468	3170543	.	-	.	Parent=Os08t0155000-02
Chr08	irgsp1_rep	CDS	3170368	3170467	.	-	0	Parent=Os08t0155000-02
Chr08	irgsp1_rep	CDS	3170079	3170152	.	-	2	Parent=Os08t0155000-02
Chr08	irgsp1_rep	CDS	3169916	3169966	.	-	0	Parent=Os08t0155000-02
Chr08	irgsp1_rep	CDS	3169609	3169752	.	-	0	Parent=Os08t0155000-02
Chr08	irgsp1_rep	CDS	3169410	3169499	.	-	0	Parent=Os08t0155000-02
Chr08	irgsp1_rep	CDS	3167443	3167549	.	-	0	Parent=Os08t0155000-02
Chr08	irgsp1_rep	CDS	3167255	3167339	.	-	1	Parent=Os08t0155000-02
Chr08	irgsp1_rep	CDS	3167067	3167165	.	-	0	Parent=Os08t0155000-02
Chr08	irgsp1_rep	three_prime_UTR	3166771	3167066	.	-	.	Parent=Os08t0155000-02
Chr08	irgsp1_rep	mRNA	3171594	3175339	.	+	.	ID=Os08t0155100-01;Name=Os08t0155100-01;Locus_id=Os08g0155100;Note=PapD-like domain containing protein.;Transcript_evidence=AK104886 (DDBJ%2C Best hit),AK069865 (DDBJ%2C Best hit);ORF_evidence=Q1ANA7 (UniProt);GO=Molecular Function: structural molecule activity (GO:0005198);InterPro=Major sperm protein (IPR000535),PapD-like (IPR008962),Vesicle-associated membrane protein (IPR016763);NIAS_FLcDNA=001-045-A07,J023037M15;Expression=AK104886;TENOR=Os08t0155100-01;KEGG=Os08t0155100-01
Chr08	irgsp1_rep	five_prime_UTR	3171594	3171859	.	+	.	Parent=Os08t0155100-01
Chr08	irgsp1_rep	CDS	3171860	3171908	.	+	0	Parent=Os08t0155100-01
Chr08	irgsp1_rep	CDS	3172660	3172730	.	+	2	Parent=Os08t0155100-01
Chr08	irgsp1_rep	CDS	3172825	3172906	.	+	0	Parent=Os08t0155100-01
Chr08	irgsp1_rep	CDS	3173021	3173136	.	+	2	Parent=Os08t0155100-01
Chr08	irgsp1_rep	CDS	3173236	3173397	.	+	0	Parent=Os08t0155100-01
Chr08	irgsp1_rep	CDS	3173502	3173546	.	+	0	Parent=Os08t0155100-01
Chr08	irgsp1_rep	CDS	3174441	3174518	.	+	0	Parent=Os08t0155100-01
Chr08	irgsp1_rep	CDS	3174976	3175086	.	+	0	Parent=Os08t0155100-01
Chr08	irgsp1_rep	three_prime_UTR	3175087	3175339	.	+	.	Parent=Os08t0155100-01
Chr08	irgsp1_rep	mRNA	3182341	3190117	.	-	.	ID=Os08t0155400-01;Name=Os08t0155400-01;Locus_id=Os08g0155400;RAP-DB Gene Symbol Synonym(s)=OsNRT1.1A;RAP-DB Gene Name Synonym(s)=nitrate transporter 1.1A;CGSNL Gene Symbol=NPF6.3;CGSNL Gene Name=NRT1/PTR FAMILY 6.3;Oryzabase Gene Symbol Synonym(s)=OsNRT1.1A%2C NRT1.1A%2C OsNRT1.1A/ OsNPF6.3%2C OsNPF6.3;Oryzabase Gene Name Synonym(s)=nitrate transporter 1.1A;Note=Similar to Nitrate/chlorate transporter.;Transcript_evidence=AK070077 (DDBJ%2C Best hit);ORF_evidence=B7EHA8;GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),PTR2 family proton/oligopeptide symporter%2C conserved site (IPR018456);NIAS_FLcDNA=J023045B01;Manual Curation=April 19%2C 2018;Oryzabase=19896;Expression=AK070077;TENOR=Os08t0155400-01;KEGG=Os08t0155400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	3190001	3190117	.	-	.	Parent=Os08t0155400-01
Chr08	irgsp1_rep	five_prime_UTR	3189193	3189291	.	-	.	Parent=Os08t0155400-01
Chr08	irgsp1_rep	CDS	3188693	3189192	.	-	0	Parent=Os08t0155400-01
Chr08	irgsp1_rep	CDS	3182753	3183614	.	-	1	Parent=Os08t0155400-01
Chr08	irgsp1_rep	three_prime_UTR	3182341	3182752	.	-	.	Parent=Os08t0155400-01
Chr08	irgsp1_rep	mRNA	3182517	3186026	.	-	.	ID=Os08t0155400-02;Name=Os08t0155400-02;Locus_id=Os08g0155400;CGSNL Gene Symbol=NPF6.3;CGSNL Gene Name=NRT1/PTR FAMILY 6.3;Oryzabase Gene Symbol Synonym(s)=OsNRT1.1A%2C NRT1.1A%2C OsNRT1.1A/ OsNPF6.3%2C OsNPF6.3;Oryzabase Gene Name Synonym(s)=nitrate transporter 1.1A;Note=Similar to cDNA clone:J023045B01%2C full insert sequence.;Transcript_evidence=AK120196 (DDBJ%2C Best hit);ORF_evidence=B7EHA8 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J013036I24;Oryzabase=19896;Expression=AK120196;TENOR=Os08t0155400-02;KEGG=Os08t0155400-02
Chr08	irgsp1_rep	five_prime_UTR	3183677	3186026	.	-	.	Parent=Os08t0155400-02
Chr08	irgsp1_rep	CDS	3182753	3183676	.	-	0	Parent=Os08t0155400-02
Chr08	irgsp1_rep	three_prime_UTR	3182517	3182752	.	-	.	Parent=Os08t0155400-02
Chr08	irgsp1_rep	mRNA	3182341	3190451	.	-	.	ID=Os08t0155400-03;Name=Os08t0155400-03;Locus_id=Os08g0155400;RAP-DB Gene Symbol Synonym(s)=OsNRT1.1A%2C OsNPF6.3;RAP-DB Gene Name Synonym(s)=nitrate transporter 1.1A;Oryzabase Gene Symbol Synonym(s)=OsNRT1.1A%2C NRT1.1A%2C OsNRT1.1A/ OsNPF6.3%2C OsNPF6.3%2C NPF6.3;Oryzabase Gene Name Synonym(s)=nitrate transporter 1.1A;Note=A member of the nitrate transporter 1/peptide transporter family%2C Regulation of N utilization and flowering;Transcript_evidence=AK061227 (truncated),Inferred from literature;ORF_evidence=Q6ZJR2;GO=Biological Process: oligopeptide transport (GO:0006857),Biological Process: transmembrane transport (GO:0055085),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Cellular Component: membrane (GO:0016020);InterPro=MFS transporter superfamily (IPR036259),Proton-dependent oligopeptide transporter family (IPR000109),PTR2 family proton/oligopeptide symporter%2C conserved site (IPR018456);NIAS_FLcDNA=006-211-A01 (truncated);Manual Curation=April 19%2C 2018;Literature_PMID=29475937;Oryzabase=19896;Expression=AK061227;TENOR=Os08t0155400-03;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=tonoplast (GO:0009705)
Chr08	irgsp1_rep	five_prime_UTR	3190352	3190451	.	-	.	Parent=Os08t0155400-03
Chr08	irgsp1_rep	CDS	3190001	3190351	.	-	0	Parent=Os08t0155400-03
Chr08	irgsp1_rep	CDS	3188693	3189291	.	-	0	Parent=Os08t0155400-03
Chr08	irgsp1_rep	CDS	3182753	3183614	.	-	1	Parent=Os08t0155400-03
Chr08	irgsp1_rep	three_prime_UTR	3182341	3182752	.	-	.	Parent=Os08t0155400-03
Chr08	irgsp1_rep	mRNA	3182766	3190297	.	+	.	ID=Os08t0155550-00;Name=Os08t0155550-00;Locus_id=Os08g0155550;Note=Hypothetical protein.;Transcript_evidence=tplb0038k08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0155550-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	3182766	3182767	.	+	.	Parent=Os08t0155550-00
Chr08	irgsp1_rep	CDS	3182768	3183589	.	+	0	Parent=Os08t0155550-00
Chr08	irgsp1_rep	CDS	3188716	3189283	.	+	0	Parent=Os08t0155550-00
Chr08	irgsp1_rep	CDS	3189992	3189999	.	+	2	Parent=Os08t0155550-00
Chr08	irgsp1_rep	three_prime_UTR	3190000	3190297	.	+	.	Parent=Os08t0155550-00
Chr08	irgsp1_rep	mRNA	3224341	3229422	.	-	.	ID=Os08t0155700-01;Name=Os08t0155700-01;Locus_id=Os08g0155700;Note=Similar to DNA-directed RNA polymerase (Fragment).;Transcript_evidence=AK062907 (DDBJ%2C Best hit);ORF_evidence=Q71ET7 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899);InterPro=RNA polymerase Rpb1%2C domain 4 (IPR007083);NIAS_FLcDNA=001-108-F11;TENOR=Os08t0155700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	3229337	3229422	.	-	0	Parent=Os08t0155700-01
Chr08	irgsp1_rep	CDS	3226445	3226544	.	-	1	Parent=Os08t0155700-01
Chr08	irgsp1_rep	three_prime_UTR	3226424	3226444	.	-	.	Parent=Os08t0155700-01
Chr08	irgsp1_rep	three_prime_UTR	3226242	3226313	.	-	.	Parent=Os08t0155700-01
Chr08	irgsp1_rep	three_prime_UTR	3225226	3225285	.	-	.	Parent=Os08t0155700-01
Chr08	irgsp1_rep	three_prime_UTR	3224341	3224758	.	-	.	Parent=Os08t0155700-01
Chr08	irgsp1_rep	mRNA	3239628	3240183	.	-	.	ID=Os08t0155800-01;Name=Os08t0155800-01;Locus_id=Os08g0155800;RAP-DB Gene Symbol Synonym(s)=pds1;RAP-DB Gene Name Synonym(s)=panicle exsertion defect and aberrant spikelet 1;CGSNL Gene Symbol=PDS1;CGSNL Gene Name=PANICLE EXSERTION DEFECT AND ABERRANT SPIKELET 1;Oryzabase Gene Symbol Synonym(s)=OsPDS1;Oryzabase Gene Name Synonym(s)=panicle exsertion defect and aberrant spikelet 1;Note=Genetic interaction locus to cause genetic incompatibility or hybrid weakness%2C Panicle development;Transcript_evidence=Inferred from literature;ORF_evidence=Q6ZDA7;Manual Curation=June 12%2C 2019;Literature_PMID=31092192;Oryzabase=23091;TENOR=Os08t0155800-00
Chr08	irgsp1_rep	CDS	3240022	3240183	.	-	0	Parent=Os08t0155800-01
Chr08	irgsp1_rep	CDS	3239628	3239933	.	-	0	Parent=Os08t0155800-01
Chr08	irgsp1_rep	mRNA	3242807	3243431	.	+	.	ID=Os08t0155900-01;Name=Os08t0155900-01;Locus_id=Os08g0155900;RAP-DB Gene Symbol Synonym(s)=OsDR10;RAP-DB Gene Name Synonym(s)=defense-responsive gene 10%2C OsDR10-NipponbareA;CGSNL Gene Symbol=DR10;CGSNL Gene Name=PATHOGEN-INDUCED DEFENSE-RESPONSIVE PROTEIN 10;Oryzabase Gene Symbol Synonym(s)=OsDR10;Oryzabase Gene Name Synonym(s)=defense-responsive gene 10%2C pathogen-induced defense-responsive protein 10;Note=Pathogen-induced defense-responsive protein%2C Negative regulation of disease resistance;Transcript_evidence=CI254543,FJ194952 (Minghui 63);ORF_evidence=Q6ZDA6,A2YRD0 (indica);Manual Curation=November 5%2C 2020;Literature_PMID=19240804;Oryzabase=14275;TENOR=Os08t0155900-00;KEGG=Os08t0155900-00
Chr08	irgsp1_rep	five_prime_UTR	3242807	3242958	.	+	.	Parent=Os08t0155900-01
Chr08	irgsp1_rep	CDS	3242959	3243261	.	+	0	Parent=Os08t0155900-01
Chr08	irgsp1_rep	three_prime_UTR	3243262	3243431	.	+	.	Parent=Os08t0155900-01
Chr08	irgsp1_rep	mRNA	3244438	3245054	.	+	.	ID=Os08t0156000-01;Name=Os08t0156000-01;Locus_id=Os08g0156000;Note=Conserved hypothetical protein.;Transcript_evidence=AK243076 (DDBJ%2C Best hit);ORF_evidence=NP_001175390.1 (RefSeq);NIAS_FLcDNA=J100019J19;TENOR=Os08t0156000-01;KEGG=Os08t0156000-01
Chr08	irgsp1_rep	five_prime_UTR	3244438	3244620	.	+	.	Parent=Os08t0156000-01
Chr08	irgsp1_rep	CDS	3244621	3244851	.	+	0	Parent=Os08t0156000-01
Chr08	irgsp1_rep	three_prime_UTR	3244852	3245054	.	+	.	Parent=Os08t0156000-01
Chr08	irgsp1_rep	mRNA	3247638	3248588	.	-	.	ID=Os08t0156066-01;Name=Os08t0156066-01;Locus_id=Os08g0156066;Note=Hypothetical gene.;Transcript_evidence=AK243508 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100075B02;TENOR=Os08t0156066-01;KEGG=Os08t0156066-01
Chr08	irgsp1_rep	five_prime_UTR	3248587	3248588	.	-	.	Parent=Os08t0156066-01
Chr08	irgsp1_rep	CDS	3248287	3248586	.	-	0	Parent=Os08t0156066-01
Chr08	irgsp1_rep	three_prime_UTR	3247638	3248286	.	-	.	Parent=Os08t0156066-01
Chr08	irgsp1_rep	mRNA	3248211	3248907	.	+	.	ID=Os08t0156100-01;Name=Os08t0156100-01;Locus_id=Os08g0156100;Note=Conserved hypothetical protein.;Transcript_evidence=AK063249 (DDBJ%2C Best hit);ORF_evidence=A2YRD2 (UniProt);NIAS_FLcDNA=001-112-H02;Expression=AK063249;TENOR=Os08t0156100-01;KEGG=Os08t0156100-01
Chr08	irgsp1_rep	five_prime_UTR	3248211	3248315	.	+	.	Parent=Os08t0156100-01
Chr08	irgsp1_rep	CDS	3248316	3248549	.	+	0	Parent=Os08t0156100-01
Chr08	irgsp1_rep	three_prime_UTR	3248550	3248907	.	+	.	Parent=Os08t0156100-01
Chr08	irgsp1_rep	mRNA	3281105	3284469	.	+	.	ID=Os08t0156600-01;Name=Os08t0156600-01;Locus_id=Os08g0156600;RAP-DB Gene Symbol Synonym(s)=OsVPE2;RAP-DB Gene Name Synonym(s)=vacuolar phosphate efflux transporter 2%2C vacuolar Pi efflux transporter 2;CGSNL Gene Symbol=VPE2;CGSNL Gene Name=VACUOLAR PHOSPHATE EFFLUX TRANSPORTER 2;Oryzabase Gene Symbol Synonym(s)=OsVPE2;Oryzabase Gene Name Synonym(s)=vacuolar Pi efflux transporter 2%2C vacuolar phosphate efflux transporter 2;Note=Vacuolar phosphate efflux transporter%2C Pi homeostasis;Transcript_evidence=AK121377;ORF_evidence=Q0J7X7;GO=Biological Process: transmembrane transport (GO:0055085),Molecular Function: transmembrane transporter activity (GO:0022857),Cellular Component: integral component of plasma membrane (GO:0005887),Cellular Component: integral component of membrane (GO:0016021);InterPro=MFS transporter superfamily (IPR036259),Major facilitator superfamily (IPR011701),Sugar phosphate transporter (IPR000849),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J023127F09;Manual Curation=October 11%2C 2019;Literature_PMID=30626920;Oryzabase=23013;Expression=AK121377;TENOR=Os08t0156600-01;KEGG=Os08t0156600-01;Subcellular location=vacuolar membrane (GO:0005774)
Chr08	irgsp1_rep	five_prime_UTR	3281105	3281312	.	+	.	Parent=Os08t0156600-01
Chr08	irgsp1_rep	five_prime_UTR	3282316	3282383	.	+	.	Parent=Os08t0156600-01
Chr08	irgsp1_rep	CDS	3282384	3283320	.	+	0	Parent=Os08t0156600-01
Chr08	irgsp1_rep	CDS	3283406	3283968	.	+	2	Parent=Os08t0156600-01
Chr08	irgsp1_rep	three_prime_UTR	3283969	3284469	.	+	.	Parent=Os08t0156600-01
Chr08	irgsp1_rep	mRNA	3282902	3284126	.	+	.	ID=Os08t0156600-02;Name=Os08t0156600-02;Locus_id=Os08g0156600;CGSNL Gene Symbol=VPE2;CGSNL Gene Name=VACUOLAR PHOSPHATE EFFLUX TRANSPORTER 2;Oryzabase Gene Symbol Synonym(s)=OsVPE2;Oryzabase Gene Name Synonym(s)=vacuolar Pi efflux transporter 2%2C vacuolar phosphate efflux transporter 2;Note=Similar to glycerol 3-phosphate permease.;Transcript_evidence=AK063143 (DDBJ%2C Best hit);ORF_evidence=NP_001147465.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=001-111-G11;Oryzabase=23013;Expression=AK063143;TENOR=Os08t0156600-02;KEGG=Os08t0156600-02
Chr08	irgsp1_rep	five_prime_UTR	3282902	3282902	.	+	.	Parent=Os08t0156600-02
Chr08	irgsp1_rep	CDS	3282903	3283320	.	+	0	Parent=Os08t0156600-02
Chr08	irgsp1_rep	CDS	3283406	3283968	.	+	2	Parent=Os08t0156600-02
Chr08	irgsp1_rep	three_prime_UTR	3283969	3284126	.	+	.	Parent=Os08t0156600-02
Chr08	irgsp1_rep	mRNA	3285096	3289874	.	-	.	ID=Os08t0156700-01;Name=Os08t0156700-01;Locus_id=Os08g0156700;Note=Similar to VAP27.;Transcript_evidence=AK070710 (DDBJ%2C Best hit);ORF_evidence=B4F9V2 (UniProt);GO=Molecular Function: structural molecule activity (GO:0005198);InterPro=Major sperm protein (IPR000535),PapD-like (IPR008962),Vesicle-associated membrane protein (IPR016763);NIAS_FLcDNA=J023062F08;Expression=AK070710;TENOR=Os08t0156700-01;KEGG=Os08t0156700-01
Chr08	irgsp1_rep	five_prime_UTR	3289732	3289874	.	-	.	Parent=Os08t0156700-01
Chr08	irgsp1_rep	CDS	3289662	3289731	.	-	0	Parent=Os08t0156700-01
Chr08	irgsp1_rep	CDS	3289462	3289532	.	-	2	Parent=Os08t0156700-01
Chr08	irgsp1_rep	CDS	3288562	3288643	.	-	0	Parent=Os08t0156700-01
Chr08	irgsp1_rep	CDS	3288355	3288470	.	-	2	Parent=Os08t0156700-01
Chr08	irgsp1_rep	CDS	3288009	3288173	.	-	0	Parent=Os08t0156700-01
Chr08	irgsp1_rep	CDS	3287880	3287921	.	-	0	Parent=Os08t0156700-01
Chr08	irgsp1_rep	CDS	3287635	3287712	.	-	0	Parent=Os08t0156700-01
Chr08	irgsp1_rep	CDS	3285349	3285456	.	-	0	Parent=Os08t0156700-01
Chr08	irgsp1_rep	three_prime_UTR	3285096	3285348	.	-	.	Parent=Os08t0156700-01
Chr08	irgsp1_rep	mRNA	3293131	3295889	.	+	.	ID=Os08t0156800-01;Name=Os08t0156800-01;Locus_id=Os08g0156800;Oryzabase Gene Name Synonym(s)=Ribosomal protein L34;Note=Similar to 60S ribosomal protein L34.;Transcript_evidence=AK103424 (DDBJ%2C Best hit);ORF_evidence=NP_001152435.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L34Ae (IPR008195),Ribosomal protein L34e%2C conserved site (IPR018065);NIAS_FLcDNA=J033128K17;Oryzabase=17676;Expression=AK103424;TENOR=Os08t0156800-01;KEGG=Os08t0156800-01
Chr08	irgsp1_rep	five_prime_UTR	3293131	3293204	.	+	.	Parent=Os08t0156800-01
Chr08	irgsp1_rep	CDS	3293205	3293283	.	+	0	Parent=Os08t0156800-01
Chr08	irgsp1_rep	CDS	3293564	3293643	.	+	2	Parent=Os08t0156800-01
Chr08	irgsp1_rep	CDS	3295385	3295494	.	+	0	Parent=Os08t0156800-01
Chr08	irgsp1_rep	CDS	3295568	3295655	.	+	1	Parent=Os08t0156800-01
Chr08	irgsp1_rep	three_prime_UTR	3295656	3295889	.	+	.	Parent=Os08t0156800-01
Chr08	irgsp1_rep	mRNA	3301039	3304257	.	-	.	ID=Os08t0156900-01;Name=Os08t0156900-01;Locus_id=Os08g0156900;RAP-DB Gene Symbol Synonym(s)=OsSPO11-2%2C OsTOP6A2;RAP-DB Gene Name Synonym(s)=topoisomerase 6 subunit A2;CGSNL Gene Symbol=TOP6A2;CGSNL Gene Name=TOPOISOMERASE 6 SUBUNIT A2;Oryzabase Gene Symbol Synonym(s)=OsTOP6A2%2C OsSpo11-2%2C OsSPO11-2%2C OsSPO11B;Oryzabase Gene Name Synonym(s)=topoisomerase 6 subunit A2;Note=Homolog of a subunit of archaebacterial topoisomerase VIA%2C Required for meiosis;Transcript_evidence=AK073344;ORF_evidence=Q6ZD95;GO=Biological Process: DNA catabolic process%2C endonucleolytic (GO:0000737),Biological Process: DNA metabolic process (GO:0006259),Molecular Function: DNA binding (GO:0003677),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524),Molecular Function: endodeoxyribonuclease activity%2C producing 3'-phosphomonoesters (GO:0016889),Cellular Component: Chromosome (GO:0005694);InterPro=Winged helix-like DNA-binding domain superfamily (IPR036388),Spo11/DNA topoisomerase VI subunit A superfamily (IPR036078),Spo11/DNA topoisomerase VI subunit A (IPR002815),Spo11/DNA topoisomerase VI%2C subunit A%2C N-terminal (IPR013049),Topoisomerase 6 subunit A/Spo11%2C TOPRIM domain (IPR034136);NIAS_FLcDNA=J033028J03;Manual Curation=August 27%2C 2020;Literature_PMID=32842152;Oryzabase=8389;Expression=AK073344;TENOR=Os08t0156900-01;KEGG=Os08t0156900-01
Chr08	irgsp1_rep	five_prime_UTR	3304184	3304257	.	-	.	Parent=Os08t0156900-01
Chr08	irgsp1_rep	CDS	3304100	3304183	.	-	0	Parent=Os08t0156900-01
Chr08	irgsp1_rep	CDS	3303790	3304009	.	-	0	Parent=Os08t0156900-01
Chr08	irgsp1_rep	CDS	3303222	3303359	.	-	2	Parent=Os08t0156900-01
Chr08	irgsp1_rep	CDS	3303042	3303130	.	-	2	Parent=Os08t0156900-01
Chr08	irgsp1_rep	CDS	3302807	3302935	.	-	0	Parent=Os08t0156900-01
Chr08	irgsp1_rep	CDS	3302627	3302721	.	-	0	Parent=Os08t0156900-01
Chr08	irgsp1_rep	CDS	3302413	3302475	.	-	1	Parent=Os08t0156900-01
Chr08	irgsp1_rep	CDS	3302249	3302325	.	-	1	Parent=Os08t0156900-01
Chr08	irgsp1_rep	CDS	3302051	3302178	.	-	2	Parent=Os08t0156900-01
Chr08	irgsp1_rep	CDS	3301474	3301608	.	-	0	Parent=Os08t0156900-01
Chr08	irgsp1_rep	three_prime_UTR	3301039	3301473	.	-	.	Parent=Os08t0156900-01
Chr08	irgsp1_rep	mRNA	3301245	3304244	.	-	.	ID=Os08t0156900-02;Name=Os08t0156900-02;Locus_id=Os08g0156900;CGSNL Gene Symbol=TOP6A2;CGSNL Gene Name=TOPOISOMERASE 6 SUBUNIT A2;Oryzabase Gene Symbol Synonym(s)=OsTOP6A2%2C OsSpo11-2%2C OsSPO11-2%2C OsSPO11B;Oryzabase Gene Name Synonym(s)=topoisomerase 6 subunit A2;Note=Similar to Topoisomerase 6 subunit A.;Transcript_evidence=AK106397 (DDBJ%2C Best hit);ORF_evidence=Q5ZPI9 (UniProt);GO=Biological Process: DNA metabolic process (GO:0006259),Cellular Component: Chromosome (GO:0005694),Molecular Function: DNA binding (GO:0003677),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524);InterPro=Spo11/DNA topoisomerase VI%2C subunit A (IPR002815),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Spo11/DNA topoisomerase VI%2C subunit A%2C N-terminal (IPR013049);NIAS_FLcDNA=002-102-F09;Oryzabase=8389;Expression=AK106397;TENOR=Os08t0156900-02;KEGG=Os08t0156900-02
Chr08	irgsp1_rep	five_prime_UTR	3304184	3304244	.	-	.	Parent=Os08t0156900-02
Chr08	irgsp1_rep	CDS	3304104	3304183	.	-	0	Parent=Os08t0156900-02
Chr08	irgsp1_rep	CDS	3303790	3303947	.	-	1	Parent=Os08t0156900-02
Chr08	irgsp1_rep	CDS	3303222	3303359	.	-	2	Parent=Os08t0156900-02
Chr08	irgsp1_rep	CDS	3303042	3303130	.	-	2	Parent=Os08t0156900-02
Chr08	irgsp1_rep	CDS	3302807	3302935	.	-	0	Parent=Os08t0156900-02
Chr08	irgsp1_rep	CDS	3302627	3302721	.	-	0	Parent=Os08t0156900-02
Chr08	irgsp1_rep	CDS	3302413	3302475	.	-	1	Parent=Os08t0156900-02
Chr08	irgsp1_rep	CDS	3302249	3302325	.	-	1	Parent=Os08t0156900-02
Chr08	irgsp1_rep	CDS	3302051	3302178	.	-	2	Parent=Os08t0156900-02
Chr08	irgsp1_rep	CDS	3301474	3301608	.	-	0	Parent=Os08t0156900-02
Chr08	irgsp1_rep	three_prime_UTR	3301245	3301473	.	-	.	Parent=Os08t0156900-02
Chr08	irgsp1_rep	mRNA	3307619	3308205	.	-	.	ID=Os08t0156950-00;Name=Os08t0156950-00;Locus_id=Os08g0156950;Note=Non-protein coding transcript.;Transcript_evidence=EU950357 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0156950-00
Chr08	irgsp1_rep	exon	3308063	3308205	.	-	.	Parent=Os08t0156950-00
Chr08	irgsp1_rep	exon	3307619	3307937	.	-	.	Parent=Os08t0156950-00
Chr08	irgsp1_rep	mRNA	3307597	3310513	.	+	.	ID=Os08t0157000-00;Name=Os08t0157000-00;Locus_id=Os08g0157000;CGSNL Gene Symbol=MAPK2;CGSNL Gene Name=MITOGEN-ACTIVATED PROTEIN KINASE 2;Oryzabase Gene Symbol Synonym(s)=OsMAPK2%2C MPK2;Oryzabase Gene Name Synonym(s)=Mitogen-activated protein kinase 2%2C MAP kinase 2;Note=Similar to Mitogen-activated protein kinase 4.;Transcript_evidence=AY506572 (DDBJ%2C Best hit);ORF_evidence=Q5J4W4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: MAP kinase activity (GO:0004707),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Tyrosine-protein kinase%2C active site (IPR008266),JNK MAP kinase (IPR008351),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=6826;TENOR=Os08t0157000-00;KEGG=Os08t0157000-00 (EC:2.7.11.24)
Chr08	irgsp1_rep	five_prime_UTR	3307597	3307638	.	+	.	Parent=Os08t0157000-00
Chr08	irgsp1_rep	CDS	3307639	3307865	.	+	0	Parent=Os08t0157000-00
Chr08	irgsp1_rep	CDS	3308067	3308196	.	+	1	Parent=Os08t0157000-00
Chr08	irgsp1_rep	CDS	3308693	3308830	.	+	0	Parent=Os08t0157000-00
Chr08	irgsp1_rep	CDS	3308960	3309292	.	+	0	Parent=Os08t0157000-00
Chr08	irgsp1_rep	CDS	3309624	3309807	.	+	0	Parent=Os08t0157000-00
Chr08	irgsp1_rep	CDS	3309991	3310163	.	+	2	Parent=Os08t0157000-00
Chr08	irgsp1_rep	three_prime_UTR	3310164	3310513	.	+	.	Parent=Os08t0157000-00
Chr08	irgsp1_rep	mRNA	3313246	3318036	.	-	.	ID=Os08t0157100-01;Name=Os08t0157100-01;Locus_id=Os08g0157100;Note=RNA polymerase II-associated%2C Paf1 domain containing protein.;Transcript_evidence=AK106701 (DDBJ%2C Best hit);ORF_evidence=D8LAM3 (UniProt);InterPro=RNA polymerase II-associated%2C Paf1 (IPR007133);NIAS_FLcDNA=002-114-E03;Expression=AK106701;TENOR=Os08t0157100-01;KEGG=Os08t0157100-01
Chr08	irgsp1_rep	five_prime_UTR	3318004	3318036	.	-	.	Parent=Os08t0157100-01
Chr08	irgsp1_rep	CDS	3317804	3318003	.	-	0	Parent=Os08t0157100-01
Chr08	irgsp1_rep	CDS	3317090	3317158	.	-	1	Parent=Os08t0157100-01
Chr08	irgsp1_rep	CDS	3316115	3316222	.	-	1	Parent=Os08t0157100-01
Chr08	irgsp1_rep	CDS	3315841	3316021	.	-	1	Parent=Os08t0157100-01
Chr08	irgsp1_rep	CDS	3315671	3315750	.	-	0	Parent=Os08t0157100-01
Chr08	irgsp1_rep	CDS	3315462	3315581	.	-	1	Parent=Os08t0157100-01
Chr08	irgsp1_rep	CDS	3315097	3315202	.	-	1	Parent=Os08t0157100-01
Chr08	irgsp1_rep	CDS	3314771	3314857	.	-	0	Parent=Os08t0157100-01
Chr08	irgsp1_rep	CDS	3314591	3314659	.	-	0	Parent=Os08t0157100-01
Chr08	irgsp1_rep	CDS	3314405	3314476	.	-	0	Parent=Os08t0157100-01
Chr08	irgsp1_rep	CDS	3314157	3314309	.	-	0	Parent=Os08t0157100-01
Chr08	irgsp1_rep	CDS	3313550	3313660	.	-	0	Parent=Os08t0157100-01
Chr08	irgsp1_rep	three_prime_UTR	3313246	3313549	.	-	.	Parent=Os08t0157100-01
Chr08	irgsp1_rep	mRNA	3326359	3327581	.	-	.	ID=Os08t0157400-01;Name=Os08t0157400-01;Locus_id=Os08g0157400;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK108144 (DDBJ%2C Best hit);ORF_evidence=NP_001148352.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=002-139-E12;Expression=AK108144;TENOR=Os08t0157400-01;KEGG=Os08t0157400-01
Chr08	irgsp1_rep	five_prime_UTR	3327496	3327581	.	-	.	Parent=Os08t0157400-01
Chr08	irgsp1_rep	CDS	3326965	3327495	.	-	0	Parent=Os08t0157400-01
Chr08	irgsp1_rep	three_prime_UTR	3326359	3326964	.	-	.	Parent=Os08t0157400-01
Chr08	irgsp1_rep	mRNA	3337804	3340918	.	-	.	ID=Os08t0157500-01;Name=Os08t0157500-01;Locus_id=Os08g0157500;RAP-DB Gene Symbol Synonym(s)=ROMT9%2C COMT%2C OsCOMT%2C ROMT-9%2C OsCOMT1%2C OsCAldOMT1%2C CAldOMT1%2C OsOMT;RAP-DB Gene Name Synonym(s)=O-METHYLTRANSFERASE 9%2C Quercetin 3-O-methyltransferase 1%2C Flavonol 3-O-methyltransferase 1%2C caffeic acid 3-O-methyltransferase%2C caffeic acid O-methyltransferase 1%2C 5-hydroxyconiferaldehyde O-methyltransferase 1%2C 5-hydroxyconiferaldehyde OMT1%2C 5-HCAld OMT1;CGSNL Gene Symbol=ROMT9;CGSNL Gene Name=O-METHYLTRANSFERASE 9;Oryzabase Gene Symbol Synonym(s)=COMT%2C OsCOMT%2C ROMT-9%2C OsCOMT1%2C OsCAldOMT1%2C CAldOMT1%2C OsOMT;Oryzabase Gene Name Synonym(s)=Quercetin 3-O-methyltransferase 1%2C Flavonol 3-O-methyltransferase 1%2C caffeic acid 3-O-methyltransferase%2C Flavonol 3-O-methyltransferase 1%2C caffeic acid O-methyltransferase 1%2C 5-hydroxyconiferaldehyde O-methyltransferase 1%2C 5-hydroxyconiferaldehyde OMT1%2C 5-HCAld OMT1;Note=Caffeic acid O-methyltransferase%2C Flavonoid 3'-O-methyltransferase%2C Melatonin biosynthesis%2C Tricin biosynthesis;Transcript_evidence=AK064768,DQ288259;ORF_evidence=Q6ZD89;GO=Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: O-methyltransferase activity (GO:0008171),Molecular Function: protein dimerization activity (GO:0046983);InterPro=O-methyltransferase COMT-type (IPR016461),Winged helix-turn-helix DNA-binding domain (IPR011991),Plant methyltransferase dimerisation (IPR012967),S-adenosyl-L-methionine-dependent methyltransferase (IPR029063),O-methyltransferase%2C family 2 (IPR001077);NIAS_FLcDNA=J013000A05;Manual Curation=June 7%2C 2016;Literature_PMID=26276868,26082402,16412485;Oryzabase=7324;TENOR=Os08t0157500-01
Chr08	irgsp1_rep	five_prime_UTR	3340838	3340918	.	-	.	Parent=Os08t0157500-01
Chr08	irgsp1_rep	CDS	3340407	3340837	.	-	0	Parent=Os08t0157500-01
Chr08	irgsp1_rep	CDS	3338040	3338715	.	-	1	Parent=Os08t0157500-01
Chr08	irgsp1_rep	three_prime_UTR	3337804	3338039	.	-	.	Parent=Os08t0157500-01
Chr08	irgsp1_rep	mRNA	3337800	3340717	.	-	.	ID=Os08t0157500-02;Name=Os08t0157500-02;Locus_id=Os08g0157500;CGSNL Gene Symbol=ROMT9;CGSNL Gene Name=O-METHYLTRANSFERASE 9;Oryzabase Gene Symbol Synonym(s)=COMT%2C OsCOMT%2C ROMT-9%2C OsCOMT1%2C OsCAldOMT1%2C CAldOMT1%2C OsOMT;Oryzabase Gene Name Synonym(s)=Quercetin 3-O-methyltransferase 1%2C Flavonol 3-O-methyltransferase 1%2C caffeic acid 3-O-methyltransferase%2C Flavonol 3-O-methyltransferase 1%2C caffeic acid O-methyltransferase 1%2C 5-hydroxyconiferaldehyde O-methyltransferase 1%2C 5-hydroxyconiferaldehyde OMT1%2C 5-HCAld OMT1;Note=Similar to Quercetin 3-O-methyltransferase 1.;Transcript_evidence=AK061859 (DDBJ%2C Best hit);ORF_evidence=Q6ZD89 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: O-methyltransferase activity (GO:0008171),Molecular Function: protein dimerization activity (GO:0046983);InterPro=O-methyltransferase%2C family 2 (IPR001077),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Plant methyltransferase dimerisation (IPR012967),O-methyltransferase%2C COMT%2C eukaryota (IPR016461);NIAS_FLcDNA=001-040-G09;Oryzabase=7324;TENOR=Os08t0157500-02
Chr08	irgsp1_rep	CDS	3340407	3340717	.	-	0	Parent=Os08t0157500-02
Chr08	irgsp1_rep	CDS	3338040	3338715	.	-	1	Parent=Os08t0157500-02
Chr08	irgsp1_rep	three_prime_UTR	3337800	3338039	.	-	.	Parent=Os08t0157500-02
Chr08	irgsp1_rep	mRNA	3351441	3353029	.	+	.	ID=Os08t0157550-01;Name=Os08t0157550-01;Locus_id=Os08g0157550;Note=Non-protein coding transcript.;Transcript_evidence=AK287731 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065141A08;TENOR=Os08t0157550-01
Chr08	irgsp1_rep	exon	3351441	3353029	.	+	.	Parent=Os08t0157550-01
Chr08	irgsp1_rep	mRNA	3360865	3373384	.	+	.	ID=Os08t0157600-01;Name=Os08t0157600-01;Locus_id=Os08g0157600;RAP-DB Gene Symbol Synonym(s)=CCA1%2C OsCCA1%2C OsLHY%2C LHY-like_Chr.8%2C COC1;RAP-DB Gene Name Synonym(s)=CIRCADIAN CLOCK ASSOCIATED 1%2C LATE ELONGATED HYPOCOTYL;CGSNL Gene Symbol=CCA1;CGSNL Gene Name=CIRCADIAN CLOCK ASSOCIATED 1;Oryzabase Gene Symbol Synonym(s)=OsCCA1%2C OsLHY%2C LHY%2C LHY-like_Chr.8%2C COC1%2C DLN203%2C OsDLN203;Oryzabase Gene Name Synonym(s)=LATE ELONGATED HYPOCOTYL%2C DLN repressor 203%2C DLN motif protein 203;Note=MYB transcription factor%2C Circadian clock;Transcript_evidence=AK111893 (Genbank);ORF_evidence=Q0J7W9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J033071N16;Manual Curation=March 16%2C 2010;Literature_PMID=20007447,17132630;Oryzabase=7275;Expression=AK111893;TENOR=Os08t0157600-01;KEGG=Os08t0157600-01
Chr08	irgsp1_rep	five_prime_UTR	3360865	3361206	.	+	.	Parent=Os08t0157600-01
Chr08	irgsp1_rep	five_prime_UTR	3361296	3361373	.	+	.	Parent=Os08t0157600-01
Chr08	irgsp1_rep	five_prime_UTR	3361644	3361699	.	+	.	Parent=Os08t0157600-01
Chr08	irgsp1_rep	five_prime_UTR	3365752	3365780	.	+	.	Parent=Os08t0157600-01
Chr08	irgsp1_rep	five_prime_UTR	3365888	3365999	.	+	.	Parent=Os08t0157600-01
Chr08	irgsp1_rep	five_prime_UTR	3366207	3366235	.	+	.	Parent=Os08t0157600-01
Chr08	irgsp1_rep	five_prime_UTR	3366397	3366558	.	+	.	Parent=Os08t0157600-01
Chr08	irgsp1_rep	CDS	3366559	3366597	.	+	0	Parent=Os08t0157600-01
Chr08	irgsp1_rep	CDS	3366670	3366781	.	+	0	Parent=Os08t0157600-01
Chr08	irgsp1_rep	CDS	3366965	3367026	.	+	2	Parent=Os08t0157600-01
Chr08	irgsp1_rep	CDS	3370973	3371191	.	+	0	Parent=Os08t0157600-01
Chr08	irgsp1_rep	CDS	3371299	3372678	.	+	0	Parent=Os08t0157600-01
Chr08	irgsp1_rep	CDS	3372769	3373116	.	+	0	Parent=Os08t0157600-01
Chr08	irgsp1_rep	three_prime_UTR	3373117	3373384	.	+	.	Parent=Os08t0157600-01
Chr08	irgsp1_rep	mRNA	3372020	3373384	.	+	.	ID=Os08t0157600-02;Name=Os08t0157600-02;Locus_id=Os08g0157600;CGSNL Gene Symbol=CCA1;CGSNL Gene Name=CIRCADIAN CLOCK ASSOCIATED 1;Oryzabase Gene Symbol Synonym(s)=OsCCA1%2C OsLHY%2C LHY%2C LHY-like_Chr.8%2C COC1%2C DLN203%2C OsDLN203;Oryzabase Gene Name Synonym(s)=LATE ELONGATED HYPOCOTYL%2C DLN repressor 203%2C DLN motif protein 203;Note=Similar to LHY protein.;Transcript_evidence=AK104073 (DDBJ%2C Best hit);ORF_evidence=NP_001131529.2 (RefSeq);NIAS_FLcDNA=001-027-C12;Oryzabase=7275;Expression=AK104073;TENOR=Os08t0157600-02;KEGG=Os08t0157600-02
Chr08	irgsp1_rep	five_prime_UTR	3372020	3372021	.	+	.	Parent=Os08t0157600-02
Chr08	irgsp1_rep	CDS	3372022	3372678	.	+	0	Parent=Os08t0157600-02
Chr08	irgsp1_rep	CDS	3372769	3373116	.	+	0	Parent=Os08t0157600-02
Chr08	irgsp1_rep	three_prime_UTR	3373117	3373384	.	+	.	Parent=Os08t0157600-02
Chr08	irgsp1_rep	mRNA	3372750	3373395	.	+	.	ID=Os08t0157600-03;Name=Os08t0157600-03;Locus_id=Os08g0157600;CGSNL Gene Symbol=CCA1;CGSNL Gene Name=CIRCADIAN CLOCK ASSOCIATED 1;Oryzabase Gene Symbol Synonym(s)=OsCCA1%2C OsLHY%2C LHY%2C LHY-like_Chr.8%2C COC1%2C DLN203%2C OsDLN203;Oryzabase Gene Name Synonym(s)=LATE ELONGATED HYPOCOTYL%2C DLN repressor 203%2C DLN motif protein 203;Note=Similar to LHY protein.;Transcript_evidence=AK121547 (DDBJ%2C Best hit);ORF_evidence=NP_001131529.2 (RefSeq);NIAS_FLcDNA=J033032F11;Oryzabase=7275;Expression=AK121547;TENOR=Os08t0157600-03;KEGG=Os08t0157600-03
Chr08	irgsp1_rep	five_prime_UTR	3372750	3372750	.	+	.	Parent=Os08t0157600-03
Chr08	irgsp1_rep	CDS	3372751	3373116	.	+	0	Parent=Os08t0157600-03
Chr08	irgsp1_rep	three_prime_UTR	3373117	3373395	.	+	.	Parent=Os08t0157600-03
Chr08	irgsp1_rep	mRNA	3377469	3378332	.	+	.	ID=Os08t0157700-00;Name=Os08t0157700-00;Locus_id=Os08g0157700;Note=Similar to NGA1 (NGATHA1)%3B transcription factor.;Transcript_evidence=Q7EZD5 (UniProt);ORF_evidence=Q7EZD5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);Oryzabase=22355;TENOR=Os08t0157700-00
Chr08	irgsp1_rep	CDS	3377469	3378332	.	+	0	Parent=Os08t0157700-00
Chr08	irgsp1_rep	mRNA	3382539	3387003	.	-	.	ID=Os08t0157800-01;Name=Os08t0157800-01;Locus_id=Os08g0157800;Note=Conserved hypothetical protein.;Transcript_evidence=AK065512 (DDBJ%2C Best hit);ORF_evidence=A2YRE6 (UniProt);NIAS_FLcDNA=J013032K03;Expression=AK065512;TENOR=Os08t0157800-01;KEGG=Os08t0157800-01
Chr08	irgsp1_rep	five_prime_UTR	3386938	3387003	.	-	.	Parent=Os08t0157800-01
Chr08	irgsp1_rep	CDS	3386820	3386937	.	-	0	Parent=Os08t0157800-01
Chr08	irgsp1_rep	CDS	3385025	3386047	.	-	2	Parent=Os08t0157800-01
Chr08	irgsp1_rep	CDS	3384725	3384900	.	-	2	Parent=Os08t0157800-01
Chr08	irgsp1_rep	CDS	3384066	3384263	.	-	0	Parent=Os08t0157800-01
Chr08	irgsp1_rep	CDS	3382819	3383460	.	-	0	Parent=Os08t0157800-01
Chr08	irgsp1_rep	three_prime_UTR	3382539	3382818	.	-	.	Parent=Os08t0157800-01
Chr08	irgsp1_rep	mRNA	3382633	3386955	.	+	.	ID=Os08t0157850-00;Name=Os08t0157850-00;Locus_id=Os08g0157850;Note=Non-protein coding transcript.;Transcript_evidence=tplb0060b22 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os08t0157850-00
Chr08	irgsp1_rep	exon	3382633	3383466	.	+	.	Parent=Os08t0157850-00
Chr08	irgsp1_rep	exon	3384072	3384236	.	+	.	Parent=Os08t0157850-00
Chr08	irgsp1_rep	exon	3384705	3384872	.	+	.	Parent=Os08t0157850-00
Chr08	irgsp1_rep	exon	3385015	3386048	.	+	.	Parent=Os08t0157850-00
Chr08	irgsp1_rep	exon	3386812	3386955	.	+	.	Parent=Os08t0157850-00
Chr08	irgsp1_rep	mRNA	3389030	3393349	.	-	.	ID=Os08t0157900-01;Name=Os08t0157900-01;Locus_id=Os08g0157900;CGSNL Gene Symbol=NAC37;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 37;Oryzabase Gene Symbol Synonym(s)=ONAC037%2C ONAC37%2C OsNTL2%2C NTL2;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 037%2C NAC domain-containing protein 37%2C NAC membrane-bound transcription factor 2%2C NAC MTF2;Note=Similar to NAM protein.;Transcript_evidence=AK065294 (DDBJ%2C Best hit);ORF_evidence=B8BAW7 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=J013002N10;Oryzabase=11478;Expression=AK065294;TENOR=Os08t0157900-01;KEGG=Os08t0157900-01
Chr08	irgsp1_rep	five_prime_UTR	3393241	3393349	.	-	.	Parent=Os08t0157900-01
Chr08	irgsp1_rep	CDS	3393072	3393240	.	-	0	Parent=Os08t0157900-01
Chr08	irgsp1_rep	CDS	3392104	3392390	.	-	2	Parent=Os08t0157900-01
Chr08	irgsp1_rep	CDS	3391519	3391845	.	-	0	Parent=Os08t0157900-01
Chr08	irgsp1_rep	CDS	3391092	3391388	.	-	0	Parent=Os08t0157900-01
Chr08	irgsp1_rep	CDS	3390183	3391007	.	-	0	Parent=Os08t0157900-01
Chr08	irgsp1_rep	CDS	3389862	3389931	.	-	0	Parent=Os08t0157900-01
Chr08	irgsp1_rep	CDS	3389559	3389773	.	-	2	Parent=Os08t0157900-01
Chr08	irgsp1_rep	three_prime_UTR	3389030	3389558	.	-	.	Parent=Os08t0157900-01
Chr08	irgsp1_rep	mRNA	3408278	3409968	.	-	.	ID=Os08t0158200-02;Name=Os08t0158200-02;Locus_id=Os08g0158200;Note=FAD linked oxidase%2C N-terminal domain containing protein.;Transcript_evidence=AK069480 (DDBJ%2C Best hit),AK104045 (DDBJ%2C Best hit);ORF_evidence=F1T162 (UniProt);NIAS_FLcDNA=J023019G18,001-022-F06;Oryzabase=20216;Expression=AK069480;TENOR=Os08t0158200-02;KEGG=Os08t0158200-02
Chr08	irgsp1_rep	five_prime_UTR	3409949	3409968	.	-	.	Parent=Os08t0158200-02
Chr08	irgsp1_rep	CDS	3408359	3409948	.	-	0	Parent=Os08t0158200-02
Chr08	irgsp1_rep	three_prime_UTR	3408278	3408358	.	-	.	Parent=Os08t0158200-02
Chr08	irgsp1_rep	mRNA	3412330	3413538	.	-	.	ID=Os08t0158300-00;Name=Os08t0158300-00;Locus_id=Os08g0158300;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q84PV6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=FAD linked oxidase%2C N-terminal (IPR006094),Berberine/berberine-like (IPR012951),FAD-binding%2C type 2 (IPR016166),FAD-linked oxidase%2C FAD-binding%2C subdomain 2 (IPR016168);TENOR=Os08t0158300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	3412330	3413538	.	-	0	Parent=Os08t0158300-00
Chr08	irgsp1_rep	mRNA	3415483	3417216	.	-	.	ID=Os08t0158400-00;Name=Os08t0158400-00;Locus_id=Os08g0158400;Note=Similar to Berberine bridge enzyme-like protein.;Transcript_evidence=AK356380 (DDBJ);ORF_evidence=F1T162 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Oxygen oxidoreductase covalent FAD-binding site (IPR006093),FAD linked oxidase%2C N-terminal (IPR006094),Berberine/berberine-like (IPR012951),FAD-binding%2C type 2 (IPR016166),FAD-binding%2C type 2%2C subdomain 1 (IPR016167),FAD-linked oxidase%2C FAD-binding%2C subdomain 2 (IPR016168);TENOR=Os08t0158400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	3417172	3417216	.	-	.	Parent=Os08t0158400-00
Chr08	irgsp1_rep	CDS	3415483	3417171	.	-	0	Parent=Os08t0158400-00
Chr08	irgsp1_rep	mRNA	3420573	3424713	.	+	.	ID=Os08t0158500-01;Name=Os08t0158500-01;Locus_id=Os08g0158500;Note=Similar to stomatin-like protein.;Transcript_evidence=AK101134 (DDBJ%2C Best hit);ORF_evidence=NP_001104970.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Band 7 protein (IPR001107),Stomatin (IPR001972);NIAS_FLcDNA=J033026G01;Expression=AK101134;TENOR=Os08t0158500-01;KEGG=Os08t0158500-01
Chr08	irgsp1_rep	five_prime_UTR	3420573	3420634	.	+	.	Parent=Os08t0158500-01
Chr08	irgsp1_rep	CDS	3420635	3420768	.	+	0	Parent=Os08t0158500-01
Chr08	irgsp1_rep	CDS	3420853	3421099	.	+	1	Parent=Os08t0158500-01
Chr08	irgsp1_rep	CDS	3422208	3422357	.	+	0	Parent=Os08t0158500-01
Chr08	irgsp1_rep	CDS	3422763	3422820	.	+	0	Parent=Os08t0158500-01
Chr08	irgsp1_rep	CDS	3422900	3422992	.	+	2	Parent=Os08t0158500-01
Chr08	irgsp1_rep	CDS	3423119	3423147	.	+	2	Parent=Os08t0158500-01
Chr08	irgsp1_rep	CDS	3423699	3423704	.	+	0	Parent=Os08t0158500-01
Chr08	irgsp1_rep	three_prime_UTR	3423705	3423792	.	+	.	Parent=Os08t0158500-01
Chr08	irgsp1_rep	three_prime_UTR	3423888	3423947	.	+	.	Parent=Os08t0158500-01
Chr08	irgsp1_rep	three_prime_UTR	3424073	3424713	.	+	.	Parent=Os08t0158500-01
Chr08	irgsp1_rep	mRNA	3420573	3424713	.	+	.	ID=Os08t0158500-02;Name=Os08t0158500-02;Locus_id=Os08g0158500;Note=Similar to Stomatin-like protein.;Transcript_evidence=AK060393 (DDBJ%2C Best hit);ORF_evidence=NP_001104970.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Band 7 protein (IPR001107),Stomatin (IPR001972);NIAS_FLcDNA=001-010-A11;Expression=AK060393;TENOR=Os08t0158500-02;KEGG=Os08t0158500-02
Chr08	irgsp1_rep	five_prime_UTR	3420573	3420634	.	+	.	Parent=Os08t0158500-02
Chr08	irgsp1_rep	CDS	3420635	3420768	.	+	0	Parent=Os08t0158500-02
Chr08	irgsp1_rep	CDS	3420853	3421099	.	+	1	Parent=Os08t0158500-02
Chr08	irgsp1_rep	CDS	3422208	3422357	.	+	0	Parent=Os08t0158500-02
Chr08	irgsp1_rep	CDS	3422763	3422820	.	+	0	Parent=Os08t0158500-02
Chr08	irgsp1_rep	CDS	3422900	3422992	.	+	2	Parent=Os08t0158500-02
Chr08	irgsp1_rep	CDS	3423119	3423151	.	+	2	Parent=Os08t0158500-02
Chr08	irgsp1_rep	CDS	3423701	3423792	.	+	2	Parent=Os08t0158500-02
Chr08	irgsp1_rep	CDS	3423888	3423947	.	+	0	Parent=Os08t0158500-02
Chr08	irgsp1_rep	CDS	3424073	3424339	.	+	0	Parent=Os08t0158500-02
Chr08	irgsp1_rep	three_prime_UTR	3424340	3424713	.	+	.	Parent=Os08t0158500-02
Chr08	irgsp1_rep	mRNA	3425736	3428059	.	+	.	ID=Os08t0158600-01;Name=Os08t0158600-01;Locus_id=Os08g0158600;Note=Similar to Cell wall invertase (EC 3.2.1.26).;Transcript_evidence=AK072477 (DDBJ%2C Best hit);ORF_evidence=B9FZ62 (UniProt);NIAS_FLcDNA=J023125I06;Expression=AK072477;TENOR=Os08t0158600-01;KEGG=Os08t0158600-01 (EC:3.2.1.26)
Chr08	irgsp1_rep	five_prime_UTR	3425736	3425842	.	+	.	Parent=Os08t0158600-01
Chr08	irgsp1_rep	CDS	3425843	3425993	.	+	0	Parent=Os08t0158600-01
Chr08	irgsp1_rep	CDS	3427699	3427907	.	+	2	Parent=Os08t0158600-01
Chr08	irgsp1_rep	three_prime_UTR	3427908	3428059	.	+	.	Parent=Os08t0158600-01
Chr08	irgsp1_rep	mRNA	3430990	3432342	.	+	.	ID=Os08t0158800-01;Name=Os08t0158800-01;Locus_id=Os08g0158800;Note=Transferase domain containing protein.;Transcript_evidence=AK107200 (DDBJ%2C Best hit);ORF_evidence=B9FZ63 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=002-125-B02;TENOR=Os08t0158800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	3430990	3430991	.	+	.	Parent=Os08t0158800-01
Chr08	irgsp1_rep	CDS	3430992	3431690	.	+	0	Parent=Os08t0158800-01
Chr08	irgsp1_rep	three_prime_UTR	3431691	3432342	.	+	.	Parent=Os08t0158800-01
Chr08	irgsp1_rep	mRNA	3432154	3438225	.	-	.	ID=Os08t0158900-01;Name=Os08t0158900-01;Locus_id=Os08g0158900;Note=GTP1/OBG domain containing protein.;Transcript_evidence=AK067062 (DDBJ%2C Best hit);ORF_evidence=NP_001151368.1 (RefSeq);GO=Biological Process: ferrous iron transport (GO:0015684),Cellular Component: integral to membrane (GO:0016021),Molecular Function: GTP binding (GO:0005525),Molecular Function: ferrous iron transmembrane transporter activity (GO:0015093);InterPro=GTP1/OBG (IPR006073),Nucleolar GTP-binding 1 (IPR010674),Ferrous iron transport protein B%2C N-terminal (IPR011619);NIAS_FLcDNA=J013092D16;TENOR=Os08t0158900-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	3438196	3438225	.	-	.	Parent=Os08t0158900-01
Chr08	irgsp1_rep	CDS	3438054	3438195	.	-	0	Parent=Os08t0158900-01
Chr08	irgsp1_rep	CDS	3437286	3437407	.	-	2	Parent=Os08t0158900-01
Chr08	irgsp1_rep	CDS	3436271	3436391	.	-	0	Parent=Os08t0158900-01
Chr08	irgsp1_rep	CDS	3436093	3436157	.	-	2	Parent=Os08t0158900-01
Chr08	irgsp1_rep	CDS	3435905	3436018	.	-	0	Parent=Os08t0158900-01
Chr08	irgsp1_rep	CDS	3435684	3435758	.	-	0	Parent=Os08t0158900-01
Chr08	irgsp1_rep	CDS	3434687	3434725	.	-	0	Parent=Os08t0158900-01
Chr08	irgsp1_rep	CDS	3434473	3434544	.	-	0	Parent=Os08t0158900-01
Chr08	irgsp1_rep	CDS	3434193	3434306	.	-	0	Parent=Os08t0158900-01
Chr08	irgsp1_rep	CDS	3433614	3433685	.	-	0	Parent=Os08t0158900-01
Chr08	irgsp1_rep	CDS	3433465	3433501	.	-	0	Parent=Os08t0158900-01
Chr08	irgsp1_rep	CDS	3432956	3433068	.	-	2	Parent=Os08t0158900-01
Chr08	irgsp1_rep	CDS	3432623	3432817	.	-	0	Parent=Os08t0158900-01
Chr08	irgsp1_rep	CDS	3432402	3432512	.	-	0	Parent=Os08t0158900-01
Chr08	irgsp1_rep	three_prime_UTR	3432154	3432401	.	-	.	Parent=Os08t0158900-01
Chr08	irgsp1_rep	mRNA	3438448	3441867	.	+	.	ID=Os08t0159000-01;Name=Os08t0159000-01;Locus_id=Os08g0159000;Note=Similar to DnaJ homolog subfamily C member 1.;Transcript_evidence=AK073617 (DDBJ%2C Best hit),AK103973 (DDBJ%2C Best hit);ORF_evidence=B6T5P4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),MYB-like (IPR017877);NIAS_FLcDNA=J033051J11,001-016-D01;Expression=AK073617;TENOR=Os08t0159000-01;KEGG=Os08t0159000-01
Chr08	irgsp1_rep	five_prime_UTR	3438448	3438520	.	+	.	Parent=Os08t0159000-01
Chr08	irgsp1_rep	CDS	3438521	3439498	.	+	0	Parent=Os08t0159000-01
Chr08	irgsp1_rep	three_prime_UTR	3439499	3439543	.	+	.	Parent=Os08t0159000-01
Chr08	irgsp1_rep	three_prime_UTR	3441550	3441867	.	+	.	Parent=Os08t0159000-01
Chr08	irgsp1_rep	mRNA	3443462	3446937	.	+	.	ID=Os08t0159100-01;Name=Os08t0159100-01;Locus_id=Os08g0159100;Note=Tetraspanin domain containing protein.;Transcript_evidence=AK070913 (DDBJ%2C Best hit),AK069857 (DDBJ%2C Best hit);ORF_evidence=NP_001150827.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Tetraspanin (IPR018499);NIAS_FLcDNA=J023064O03,J023035K06;TENOR=Os08t0159100-01
Chr08	irgsp1_rep	five_prime_UTR	3443462	3443726	.	+	.	Parent=Os08t0159100-01
Chr08	irgsp1_rep	CDS	3443727	3443995	.	+	0	Parent=Os08t0159100-01
Chr08	irgsp1_rep	CDS	3444623	3444719	.	+	1	Parent=Os08t0159100-01
Chr08	irgsp1_rep	CDS	3445092	3445172	.	+	0	Parent=Os08t0159100-01
Chr08	irgsp1_rep	CDS	3445258	3445362	.	+	0	Parent=Os08t0159100-01
Chr08	irgsp1_rep	CDS	3446327	3446524	.	+	0	Parent=Os08t0159100-01
Chr08	irgsp1_rep	CDS	3446613	3446699	.	+	0	Parent=Os08t0159100-01
Chr08	irgsp1_rep	three_prime_UTR	3446700	3446937	.	+	.	Parent=Os08t0159100-01
Chr08	irgsp1_rep	mRNA	3460798	3463758	.	-	.	ID=Os08t0159500-01;Name=Os08t0159500-01;Locus_id=Os08g0159500;RAP-DB Gene Symbol Synonym(s)=OsLOL1%2C OsLSD1;Oryzabase Gene Symbol Synonym(s)=OsLSD1%2C OsLOL1%2C OsLSD1.1%2C LSD1.1%2C LSD1;Oryzabase Gene Name Synonym(s)=zinc finger protein LSD1%2C LESION SIMULATING DISEASE1.1%2C LESION SIMULATING DISEASE 1.1;Note=C2C2-type zinc finger protein%2C Promotion of seed germination%2C Modulation of gibberellin biosynthesis%2C Regulation of cell death and callus differentiation;Transcript_evidence=AK111759;ORF_evidence=Q0J7V9;InterPro=Multiheme cytoChrome superfamily (IPR036280),Zinc finger%2C LSD1-type (IPR005735);NIAS_FLcDNA=J023055E16;Manual Curation=February 18%2C 2019;Literature_PMID=25353370,15915636;Oryzabase=14079;Expression=AK111759;TENOR=Os08t0159500-01;KEGG=Os08t0159500-01;Subcellular location=nucleus (GO:0005634)
Chr08	irgsp1_rep	five_prime_UTR	3463662	3463758	.	-	.	Parent=Os08t0159500-01
Chr08	irgsp1_rep	five_prime_UTR	3463330	3463417	.	-	.	Parent=Os08t0159500-01
Chr08	irgsp1_rep	five_prime_UTR	3462999	3463206	.	-	.	Parent=Os08t0159500-01
Chr08	irgsp1_rep	CDS	3462818	3462998	.	-	0	Parent=Os08t0159500-01
Chr08	irgsp1_rep	CDS	3462274	3462387	.	-	2	Parent=Os08t0159500-01
Chr08	irgsp1_rep	CDS	3461840	3461953	.	-	2	Parent=Os08t0159500-01
Chr08	irgsp1_rep	CDS	3461270	3461379	.	-	2	Parent=Os08t0159500-01
Chr08	irgsp1_rep	CDS	3461068	3461103	.	-	0	Parent=Os08t0159500-01
Chr08	irgsp1_rep	three_prime_UTR	3460798	3461067	.	-	.	Parent=Os08t0159500-01
Chr08	irgsp1_rep	mRNA	3460765	3462226	.	-	.	ID=Os08t0159500-02;Name=Os08t0159500-02;Locus_id=Os08g0159500;Oryzabase Gene Symbol Synonym(s)=OsLSD1%2C OsLOL1%2C OsLSD1.1%2C LSD1.1%2C LSD1;Oryzabase Gene Name Synonym(s)=zinc finger protein LSD1%2C LESION SIMULATING DISEASE1.1%2C LESION SIMULATING DISEASE 1.1;Note=Similar to LOL1.;Transcript_evidence=AK059153 (DDBJ%2C Best hit);ORF_evidence=B6U6W7 (UniProt);InterPro=Zinc finger%2C LSD1-type (IPR005735);NIAS_FLcDNA=001-023-B12;Oryzabase=14079;Expression=AK059153;TENOR=Os08t0159500-02;KEGG=Os08t0159500-02
Chr08	irgsp1_rep	five_prime_UTR	3462012	3462226	.	-	.	Parent=Os08t0159500-02
Chr08	irgsp1_rep	CDS	3461730	3462011	.	-	0	Parent=Os08t0159500-02
Chr08	irgsp1_rep	three_prime_UTR	3460765	3461729	.	-	.	Parent=Os08t0159500-02
Chr08	irgsp1_rep	mRNA	3493417	3494794	.	-	.	ID=Os08t0159700-01;Name=Os08t0159700-01;Locus_id=Os08g0159700;Note=Protein of unknown function DUF296 domain containing protein.;Transcript_evidence=AK109080 (DDBJ%2C Best hit);ORF_evidence=NP_001146992.1 (RefSeq);InterPro=Domain of unknown function DUF296 (IPR005175),Predicted AT-hook DNA-binding (IPR014476);NIAS_FLcDNA=002-154-H03;Expression=AK109080;TENOR=Os08t0159700-01;KEGG=Os08t0159700-01
Chr08	irgsp1_rep	five_prime_UTR	3494661	3494794	.	-	.	Parent=Os08t0159700-01
Chr08	irgsp1_rep	CDS	3493704	3494573	.	-	0	Parent=Os08t0159700-01
Chr08	irgsp1_rep	three_prime_UTR	3493417	3493703	.	-	.	Parent=Os08t0159700-01
Chr08	irgsp1_rep	mRNA	3508715	3512242	.	-	.	ID=Os08t0159800-00;Name=Os08t0159800-00;Locus_id=Os08g0159800;CGSNL Gene Symbol=C3H56;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56;Oryzabase Gene Symbol Synonym(s)=OsC3H56;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 56;Note=Zinc finger%2C CCCH-type domain containing protein.;Transcript_evidence=FP098377 (DDBJ);ORF_evidence=NP_001061044.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);Oryzabase=8622;TENOR=Os08t0159800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	3512008	3512242	.	-	.	Parent=Os08t0159800-00
Chr08	irgsp1_rep	CDS	3511188	3512007	.	-	0	Parent=Os08t0159800-00
Chr08	irgsp1_rep	CDS	3509094	3509377	.	-	2	Parent=Os08t0159800-00
Chr08	irgsp1_rep	three_prime_UTR	3509011	3509093	.	-	.	Parent=Os08t0159800-00
Chr08	irgsp1_rep	three_prime_UTR	3508715	3508940	.	-	.	Parent=Os08t0159800-00
Chr08	irgsp1_rep	mRNA	3514899	3518732	.	-	.	ID=Os08t0159900-01;Name=Os08t0159900-01;Locus_id=Os08g0159900;RAP-DB Gene Symbol Synonym(s)=OsRH42;RAP-DB Gene Name Synonym(s)=RNA helicase 42;Oryzabase Gene Symbol Synonym(s)=PRP5%2C OsRH42;Oryzabase Gene Name Synonym(s)=Pre-mRNA-processing ATP-dependent RNA helicase PRP5%2C RNA helicase 42;Note=DEAD-box RNA helicase%2C Pre-mRNA splicing under cold stress;Transcript_evidence=AK102356;ORF_evidence=Q84UQ1;GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: ATP binding (GO:0005524);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014),Helicase superfamily 1/2%2C ATP-binding domain (IPR014001),DEAD/DEAH box helicase domain (IPR011545),Helicase%2C C-terminal (IPR001650),ATP-dependent RNA helicase DEAD-box%2C conserved site (IPR000629);NIAS_FLcDNA=J033091H10;Manual Curation=November 22%2C 2019;Literature_PMID=31753844;Oryzabase=11604;Expression=AK102356;TENOR=Os08t0159900-01;KEGG=Os08t0159900-01 (EC:3.6.4.13);Subcellular location=nucleus (GO:0005634), splicing speckle (GO:0016607)
Chr08	irgsp1_rep	five_prime_UTR	3518680	3518732	.	-	.	Parent=Os08t0159900-01
Chr08	irgsp1_rep	CDS	3515530	3518679	.	-	0	Parent=Os08t0159900-01
Chr08	irgsp1_rep	three_prime_UTR	3515496	3515529	.	-	.	Parent=Os08t0159900-01
Chr08	irgsp1_rep	three_prime_UTR	3514899	3515342	.	-	.	Parent=Os08t0159900-01
Chr08	irgsp1_rep	mRNA	3514010	3515536	.	-	.	ID=Os08t0159900-02;Name=Os08t0159900-02;Locus_id=Os08g0159900;Oryzabase Gene Symbol Synonym(s)=PRP5%2C OsRH42;Oryzabase Gene Name Synonym(s)=Pre-mRNA-processing ATP-dependent RNA helicase PRP5%2C RNA helicase 42;Note=Hypothetical conserved gene.;Transcript_evidence=AK071070 (DDBJ%2C Best hit);ORF_evidence=Q84UQ2 (UniProt);NIAS_FLcDNA=J023079C05;Oryzabase=11604;Expression=AK071070;TENOR=Os08t0159900-02;KEGG=Os08t0159900-02
Chr08	irgsp1_rep	five_prime_UTR	3515496	3515536	.	-	.	Parent=Os08t0159900-02
Chr08	irgsp1_rep	five_prime_UTR	3514259	3515342	.	-	.	Parent=Os08t0159900-02
Chr08	irgsp1_rep	CDS	3514079	3514258	.	-	0	Parent=Os08t0159900-02
Chr08	irgsp1_rep	three_prime_UTR	3514010	3514078	.	-	.	Parent=Os08t0159900-02
Chr08	irgsp1_rep	mRNA	3521480	3524095	.	-	.	ID=Os08t0160000-01;Name=Os08t0160000-01;Locus_id=Os08g0160000;Note=Tho complex subunit 7 domain containing protein.;Transcript_evidence=AK059267 (DDBJ%2C Best hit);ORF_evidence=NP_001150324.1 (RefSeq);InterPro=Tho complex subunit 7/Mft1p (IPR008501),Tho complex subunit 7 (IPR018018);NIAS_FLcDNA=001-025-B05;Expression=AK059267;TENOR=Os08t0160000-01;KEGG=Os08t0160000-01
Chr08	irgsp1_rep	five_prime_UTR	3523800	3524095	.	-	.	Parent=Os08t0160000-01
Chr08	irgsp1_rep	five_prime_UTR	3522903	3522943	.	-	.	Parent=Os08t0160000-01
Chr08	irgsp1_rep	CDS	3522309	3522902	.	-	0	Parent=Os08t0160000-01
Chr08	irgsp1_rep	CDS	3521783	3521917	.	-	0	Parent=Os08t0160000-01
Chr08	irgsp1_rep	three_prime_UTR	3521480	3521782	.	-	.	Parent=Os08t0160000-01
Chr08	irgsp1_rep	mRNA	3531033	3534901	.	+	.	ID=Os08t0160300-00;Name=Os08t0160300-00;Locus_id=Os08g0160300;Note=Similar to KANADI-like transcription factor FEATHERED.;Transcript_evidence=BT088311 (DDBJ);ORF_evidence=NP_001147919.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778);TENOR=Os08t0160300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	3531033	3531066	.	+	.	Parent=Os08t0160300-00
Chr08	irgsp1_rep	CDS	3531067	3531616	.	+	0	Parent=Os08t0160300-00
Chr08	irgsp1_rep	CDS	3531812	3531888	.	+	2	Parent=Os08t0160300-00
Chr08	irgsp1_rep	CDS	3533160	3533205	.	+	0	Parent=Os08t0160300-00
Chr08	irgsp1_rep	CDS	3533465	3533648	.	+	2	Parent=Os08t0160300-00
Chr08	irgsp1_rep	CDS	3534596	3534650	.	+	1	Parent=Os08t0160300-00
Chr08	irgsp1_rep	CDS	3534776	3534901	.	+	0	Parent=Os08t0160300-00
Chr08	irgsp1_rep	mRNA	3544377	3550660	.	-	.	ID=Os08t0160500-01;Name=Os08t0160500-01;Locus_id=Os08g0160500;RAP-DB Gene Symbol Synonym(s)=CSLF6%2C OsCslF6%2C OsCSLF6;RAP-DB Gene Name Synonym(s)=CELLULOSE SYNTHASE LIKE F6;CGSNL Gene Symbol=CSLF6;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE F6;Oryzabase Gene Symbol Synonym(s)=OsCslF6%2C OsCSLF6%2C OsCLD3%2C CLD3;Note=MLG (mixed-linkage glucan) synthase%2C Biosynthesis of MLG (cell wall polysaccharide);Transcript_evidence=NM_001067583,AK065259;ORF_evidence=Q84UP7;GO=Biological Process: cellulose biosynthetic process (GO:0030244),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760),Cellular Component: membrane (GO:0016020);InterPro=Cellulose synthase (IPR005150),Nucleotide-diphospho-sugar transferases (IPR029044);NIAS_FLcDNA=J013002J18;Manual Curation=August 28%2C 2014;Literature_PMID=22388489;Oryzabase=13906;TENOR=Os08t0160500-01;KEGG=Os08t0160500-01
Chr08	irgsp1_rep	five_prime_UTR	3550352	3550660	.	-	.	Parent=Os08t0160500-01
Chr08	irgsp1_rep	CDS	3550032	3550351	.	-	0	Parent=Os08t0160500-01
Chr08	irgsp1_rep	CDS	3547239	3547983	.	-	1	Parent=Os08t0160500-01
Chr08	irgsp1_rep	CDS	3544914	3546707	.	-	0	Parent=Os08t0160500-01
Chr08	irgsp1_rep	three_prime_UTR	3544377	3544913	.	-	.	Parent=Os08t0160500-01
Chr08	irgsp1_rep	mRNA	3546839	3548583	.	-	.	ID=Os08t0160500-02;Name=Os08t0160500-02;Locus_id=Os08g0160500;CGSNL Gene Symbol=CSLF6;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE F6;Oryzabase Gene Symbol Synonym(s)=OsCslF6%2C OsCSLF6%2C OsCLD3%2C CLD3;Note=Similar to Cellulose synthase-like CslF6.;Transcript_evidence=AK109812 (DDBJ%2C Best hit);ORF_evidence=D0U5L9 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150);NIAS_FLcDNA=002-147-H02;Oryzabase=13906;TENOR=Os08t0160500-02;KEGG=Os08t0160500-02
Chr08	irgsp1_rep	five_prime_UTR	3548004	3548583	.	-	.	Parent=Os08t0160500-02
Chr08	irgsp1_rep	CDS	3547218	3548003	.	-	0	Parent=Os08t0160500-02
Chr08	irgsp1_rep	three_prime_UTR	3546839	3547217	.	-	.	Parent=Os08t0160500-02
Chr08	irgsp1_rep	mRNA	3544845	3546928	.	+	.	ID=Os08t0160600-01;Name=Os08t0160600-01;Locus_id=Os08g0160600;Note=Hypothetical protein.;Transcript_evidence=AK106763 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-115-E08;Expression=AK106763;TENOR=Os08t0160600-01;KEGG=Os08t0160600-01
Chr08	irgsp1_rep	five_prime_UTR	3544845	3545006	.	+	.	Parent=Os08t0160600-01
Chr08	irgsp1_rep	CDS	3545007	3546791	.	+	0	Parent=Os08t0160600-01
Chr08	irgsp1_rep	three_prime_UTR	3546792	3546928	.	+	.	Parent=Os08t0160600-01
Chr08	irgsp1_rep	mRNA	3548596	3549530	.	-	.	ID=Os08t0160700-01;Name=Os08t0160700-01;Locus_id=Os08g0160700;Note=Non-protein coding transcript.;Transcript_evidence=AK063152 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-111-H08;TENOR=Os08t0160700-01
Chr08	irgsp1_rep	exon	3548596	3549530	.	-	.	Parent=Os08t0160700-01
Chr08	irgsp1_rep	mRNA	3549236	3550600	.	+	.	ID=Os08t0160901-00;Name=Os08t0160901-00;Locus_id=Os08g0160901;Note=Hypothetical protein.;Transcript_evidence=FP100311 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0160901-00
Chr08	irgsp1_rep	five_prime_UTR	3549236	3549436	.	+	.	Parent=Os08t0160901-00
Chr08	irgsp1_rep	five_prime_UTR	3549505	3549756	.	+	.	Parent=Os08t0160901-00
Chr08	irgsp1_rep	five_prime_UTR	3550027	3550196	.	+	.	Parent=Os08t0160901-00
Chr08	irgsp1_rep	CDS	3550197	3550445	.	+	0	Parent=Os08t0160901-00
Chr08	irgsp1_rep	three_prime_UTR	3550446	3550600	.	+	.	Parent=Os08t0160901-00
Chr08	irgsp1_rep	mRNA	3575826	3577853	.	+	.	ID=Os08t0161100-00;Name=Os08t0161100-00;Locus_id=Os08g0161100;Note=Similar to stomatin1.;Transcript_evidence=FP101561 (DDBJ);ORF_evidence=NP_001104970.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Band 7 protein (IPR001107),Stomatin (IPR001972);TENOR=Os08t0161100-00
Chr08	irgsp1_rep	CDS	3575826	3576332	.	+	0	Parent=Os08t0161100-00
Chr08	irgsp1_rep	CDS	3577695	3577853	.	+	0	Parent=Os08t0161100-00
Chr08	irgsp1_rep	mRNA	3594493	3595314	.	-	.	ID=Os08t0161401-01;Name=Os08t0161401-01;Locus_id=Os08g0161401;Note=Hypothetical conserved gene.;Transcript_evidence=AK287888 (DDBJ%2C Best hit);ORF_evidence=Q84UP3 (UniProt);NIAS_FLcDNA=J065208L21;TENOR=Os08t0161401-01;KEGG=Os08t0161401-01
Chr08	irgsp1_rep	five_prime_UTR	3595169	3595314	.	-	.	Parent=Os08t0161401-01
Chr08	irgsp1_rep	CDS	3594578	3595168	.	-	0	Parent=Os08t0161401-01
Chr08	irgsp1_rep	three_prime_UTR	3594493	3594577	.	-	.	Parent=Os08t0161401-01
Chr08	irgsp1_rep	mRNA	3596518	3601575	.	-	.	ID=Os08t0161500-01;Name=Os08t0161500-01;Locus_id=Os08g0161500;Note=Alpha/beta hydrolase fold-1 domain containing protein.;Transcript_evidence=AK060630 (DDBJ%2C Best hit);ORF_evidence=B4F8T0 (UniProt);NIAS_FLcDNA=001-027-A01;Expression=AK060630;TENOR=Os08t0161500-01;KEGG=Os08t0161500-01
Chr08	irgsp1_rep	five_prime_UTR	3600972	3601575	.	-	.	Parent=Os08t0161500-01
Chr08	irgsp1_rep	CDS	3600655	3600971	.	-	0	Parent=Os08t0161500-01
Chr08	irgsp1_rep	CDS	3600012	3600048	.	-	1	Parent=Os08t0161500-01
Chr08	irgsp1_rep	CDS	3598903	3599139	.	-	0	Parent=Os08t0161500-01
Chr08	irgsp1_rep	CDS	3598758	3598805	.	-	0	Parent=Os08t0161500-01
Chr08	irgsp1_rep	CDS	3596633	3597163	.	-	0	Parent=Os08t0161500-01
Chr08	irgsp1_rep	three_prime_UTR	3596518	3596632	.	-	.	Parent=Os08t0161500-01
Chr08	irgsp1_rep	mRNA	3613402	3615762	.	+	.	ID=Os08t0161700-01;Name=Os08t0161700-01;Locus_id=Os08g0161700;Note=NADH dehydrogenase [ubiquinone] (complex I)%2C iron-sulphur protein 6%2C mitochondria domain containing protein.;Transcript_evidence=AK059272 (DDBJ%2C Best hit);ORF_evidence=NP_001151169.1 (RefSeq);InterPro=NADH dehydrogenase [ubiquinone] (complex I)%2C iron-sulphur protein 6%2C mitochondria (IPR016668),Zinc finger%2C CHCC-type (IPR019401);NIAS_FLcDNA=001-025-B12;Expression=AK059272;TENOR=Os08t0161700-01;KEGG=Os08t0161700-01 (EC:1.6.5.3%2C EC:1.6.99.3)
Chr08	irgsp1_rep	five_prime_UTR	3613402	3613431	.	+	.	Parent=Os08t0161700-01
Chr08	irgsp1_rep	CDS	3613432	3613575	.	+	0	Parent=Os08t0161700-01
Chr08	irgsp1_rep	CDS	3615244	3615340	.	+	0	Parent=Os08t0161700-01
Chr08	irgsp1_rep	CDS	3615465	3615577	.	+	2	Parent=Os08t0161700-01
Chr08	irgsp1_rep	three_prime_UTR	3615578	3615762	.	+	.	Parent=Os08t0161700-01
Chr08	irgsp1_rep	mRNA	3616279	3618459	.	+	.	ID=Os08t0161750-00;Name=Os08t0161750-00;Locus_id=Os08g0161750;Note=Similar to Secretory carrier-associated membrane protein 2.;Transcript_evidence=AK372856 (DDBJ);ORF_evidence=B7X6S6 (UniProt);GO=Biological Process: protein transport (GO:0015031),Cellular Component: integral to membrane (GO:0016021);InterPro=SCAMP (IPR007273);TENOR=Os08t0161750-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	3616279	3616380	.	+	0	Parent=Os08t0161750-00
Chr08	irgsp1_rep	CDS	3616612	3616716	.	+	0	Parent=Os08t0161750-00
Chr08	irgsp1_rep	CDS	3616836	3616898	.	+	0	Parent=Os08t0161750-00
Chr08	irgsp1_rep	CDS	3617145	3617178	.	+	0	Parent=Os08t0161750-00
Chr08	irgsp1_rep	CDS	3617265	3617387	.	+	2	Parent=Os08t0161750-00
Chr08	irgsp1_rep	CDS	3617472	3617534	.	+	2	Parent=Os08t0161750-00
Chr08	irgsp1_rep	CDS	3617769	3617773	.	+	2	Parent=Os08t0161750-00
Chr08	irgsp1_rep	three_prime_UTR	3617774	3617841	.	+	.	Parent=Os08t0161750-00
Chr08	irgsp1_rep	three_prime_UTR	3618036	3618103	.	+	.	Parent=Os08t0161750-00
Chr08	irgsp1_rep	three_prime_UTR	3618187	3618235	.	+	.	Parent=Os08t0161750-00
Chr08	irgsp1_rep	three_prime_UTR	3618376	3618459	.	+	.	Parent=Os08t0161750-00
Chr08	irgsp1_rep	mRNA	3619583	3621580	.	-	.	ID=Os08t0161800-01;Name=Os08t0161800-01;Locus_id=Os08g0161800;Note=Similar to Choline-phosphate cytidylyltransferase B.;Transcript_evidence=AK120881 (DDBJ%2C Best hit);ORF_evidence=B6U468 (UniProt);NIAS_FLcDNA=J023028E21;Expression=AK120881;TENOR=Os08t0161800-01;KEGG=Os08t0161800-01
Chr08	irgsp1_rep	five_prime_UTR	3620058	3621580	.	-	.	Parent=Os08t0161800-01
Chr08	irgsp1_rep	CDS	3619854	3620057	.	-	0	Parent=Os08t0161800-01
Chr08	irgsp1_rep	three_prime_UTR	3619583	3619853	.	-	.	Parent=Os08t0161800-01
Chr08	irgsp1_rep	mRNA	3619574	3621526	.	-	.	ID=Os08t0161800-02;Name=Os08t0161800-02;Locus_id=Os08g0161800;Note=Similar to Cholinephosphate cytidylyltransferase.;Transcript_evidence=AK059796 (DDBJ%2C Best hit);ORF_evidence=B6U468 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=Cytidylyltransferase (IPR004820),Cytidyltransferase-related (IPR004821),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=006-204-E10;Expression=AK059796;TENOR=Os08t0161800-02;KEGG=Os08t0161800-02 (EC:2.7.7.15)
Chr08	irgsp1_rep	five_prime_UTR	3621487	3621526	.	-	.	Parent=Os08t0161800-02
Chr08	irgsp1_rep	CDS	3621320	3621486	.	-	0	Parent=Os08t0161800-02
Chr08	irgsp1_rep	CDS	3620922	3621036	.	-	1	Parent=Os08t0161800-02
Chr08	irgsp1_rep	CDS	3620719	3620813	.	-	0	Parent=Os08t0161800-02
Chr08	irgsp1_rep	CDS	3620524	3620566	.	-	1	Parent=Os08t0161800-02
Chr08	irgsp1_rep	CDS	3620280	3620435	.	-	0	Parent=Os08t0161800-02
Chr08	irgsp1_rep	CDS	3620133	3620201	.	-	0	Parent=Os08t0161800-02
Chr08	irgsp1_rep	CDS	3619947	3620057	.	-	0	Parent=Os08t0161800-02
Chr08	irgsp1_rep	CDS	3619761	3619850	.	-	0	Parent=Os08t0161800-02
Chr08	irgsp1_rep	three_prime_UTR	3619574	3619760	.	-	.	Parent=Os08t0161800-02
Chr08	irgsp1_rep	mRNA	3622755	3624999	.	-	.	ID=Os08t0161900-01;Name=Os08t0161900-01;Locus_id=Os08g0161900;Oryzabase Gene Symbol Synonym(s)=OsDjB8;Oryzabase Gene Name Synonym(s)=DnaJ domain protein B8;Note=Molecular chaperone%2C heat shock protein%2C Hsp40%2C DnaJ domain containing protein.;Transcript_evidence=AK240890 (DDBJ%2C Best hit);ORF_evidence=XP_002886287.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Chaperone DnaJ%2C C-terminal (IPR002939),Heat shock protein DnaJ (IPR003095),HSP40/DnaJ peptide-binding (IPR008971),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=J065029L13;Oryzabase=12156;TENOR=Os08t0161900-01;KEGG=Os08t0161900-01
Chr08	irgsp1_rep	five_prime_UTR	3624632	3624999	.	-	.	Parent=Os08t0161900-01
Chr08	irgsp1_rep	CDS	3624464	3624631	.	-	0	Parent=Os08t0161900-01
Chr08	irgsp1_rep	CDS	3623534	3623940	.	-	0	Parent=Os08t0161900-01
Chr08	irgsp1_rep	CDS	3622999	3623452	.	-	1	Parent=Os08t0161900-01
Chr08	irgsp1_rep	three_prime_UTR	3622755	3622998	.	-	.	Parent=Os08t0161900-01
Chr08	irgsp1_rep	mRNA	3622820	3624650	.	+	.	ID=Os08t0161950-00;Name=Os08t0161950-00;Locus_id=Os08g0161950;Note=Hypothetical protein.;Transcript_evidence=tplb0026i01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0161950-00
Chr08	irgsp1_rep	five_prime_UTR	3622820	3623077	.	+	.	Parent=Os08t0161950-00
Chr08	irgsp1_rep	CDS	3623078	3623454	.	+	0	Parent=Os08t0161950-00
Chr08	irgsp1_rep	CDS	3623538	3623592	.	+	1	Parent=Os08t0161950-00
Chr08	irgsp1_rep	three_prime_UTR	3623593	3623924	.	+	.	Parent=Os08t0161950-00
Chr08	irgsp1_rep	three_prime_UTR	3624446	3624650	.	+	.	Parent=Os08t0161950-00
Chr08	irgsp1_rep	mRNA	3630958	3635519	.	+	.	ID=Os08t0162000-01;Name=Os08t0162000-01;Locus_id=Os08g0162000;Note=Similar to transmembrane 9 superfamily protein member 1.;Transcript_evidence=AK119463 (DDBJ%2C Best hit);ORF_evidence=NP_001148367.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Nonaspanin (TM9SF) (IPR004240);NIAS_FLcDNA=001-133-E12;TENOR=Os08t0162000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	3630958	3631292	.	+	.	Parent=Os08t0162000-01
Chr08	irgsp1_rep	five_prime_UTR	3631395	3631572	.	+	.	Parent=Os08t0162000-01
Chr08	irgsp1_rep	five_prime_UTR	3632209	3632568	.	+	.	Parent=Os08t0162000-01
Chr08	irgsp1_rep	CDS	3632569	3633233	.	+	0	Parent=Os08t0162000-01
Chr08	irgsp1_rep	CDS	3633318	3633459	.	+	1	Parent=Os08t0162000-01
Chr08	irgsp1_rep	three_prime_UTR	3633460	3633699	.	+	.	Parent=Os08t0162000-01
Chr08	irgsp1_rep	three_prime_UTR	3633793	3634277	.	+	.	Parent=Os08t0162000-01
Chr08	irgsp1_rep	three_prime_UTR	3635025	3635519	.	+	.	Parent=Os08t0162000-01
Chr08	irgsp1_rep	mRNA	3636181	3638028	.	+	.	ID=Os08t0162033-00;Name=Os08t0162033-00;Locus_id=Os08g0162033;Note=Similar to 50S ribosomal protein L13.;Transcript_evidence=BT040800 (DDBJ);ORF_evidence=B6TQ75 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L13 (IPR005822),Ribosomal protein L13%2C bacterial-type (IPR005823),Ribosomal protein L13 domain (IPR023564);TENOR=Os08t0162033-00;KEGG=Os08t0162033-00
Chr08	irgsp1_rep	five_prime_UTR	3636181	3636266	.	+	.	Parent=Os08t0162033-00
Chr08	irgsp1_rep	CDS	3636267	3636305	.	+	0	Parent=Os08t0162033-00
Chr08	irgsp1_rep	CDS	3636619	3636690	.	+	0	Parent=Os08t0162033-00
Chr08	irgsp1_rep	CDS	3636792	3636958	.	+	0	Parent=Os08t0162033-00
Chr08	irgsp1_rep	CDS	3637053	3637164	.	+	1	Parent=Os08t0162033-00
Chr08	irgsp1_rep	CDS	3637808	3638026	.	+	0	Parent=Os08t0162033-00
Chr08	irgsp1_rep	three_prime_UTR	3638027	3638028	.	+	.	Parent=Os08t0162033-00
Chr08	irgsp1_rep	mRNA	3657275	3661506	.	-	.	ID=Os08t0162066-01;Name=Os08t0162066-01;Locus_id=Os08g0162066;Note=Conserved hypothetical protein.;Transcript_evidence=AK288660 (DDBJ%2C Best hit);ORF_evidence=Q6Z3B0 (UniProt);NIAS_FLcDNA=J090057N05;TENOR=Os08t0162066-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	3657698	3661506	.	-	.	Parent=Os08t0162066-01
Chr08	irgsp1_rep	CDS	3657593	3657697	.	-	0	Parent=Os08t0162066-01
Chr08	irgsp1_rep	three_prime_UTR	3657275	3657592	.	-	.	Parent=Os08t0162066-01
Chr08	irgsp1_rep	mRNA	3667092	3675772	.	+	.	ID=Os08t0162100-01;Name=Os08t0162100-01;Locus_id=Os08g0162100;RAP-DB Gene Symbol Synonym(s)=OsLIS-L1%2C OsWD40-155%2C ASP1;RAP-DB Gene Name Synonym(s)=Lissencephaly type-1-like 1%2C ABERRANT SPIKELET AND PANICLE1;CGSNL Gene Symbol=ASP1;CGSNL Gene Name=ABERRANT SPIKELET AND PANICLE 1;Oryzabase Gene Symbol Synonym(s)=OsLIS-L1%2C OsWD40-155%2C ASP1%2C TPR2%2C OsTPR2%2C OsREL2%2C REL2%2C OsTPL3%2C TPL3;Oryzabase Gene Name Synonym(s)=Lissencephaly type-1-like 1%2C ABERRANT SPIKELET AND PANICLE1%2C TOPLESS-RELATED PROTEIN 2%2C TOPLESS 3;Note=Transcriptional co-repressor%2C Regulation of meristem fate;Transcript_evidence=AB638269,AK111830;ORF_evidence=Q0J7U6;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: protein binding (GO:0005515);InterPro=Topless family (IPR027728),LIS1 homology motif (IPR006594),CTLH%2C C-terminal LisH motif (IPR006595),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat (IPR001680),WD40 repeat%2C conserved site (IPR019775);NIAS_FLcDNA=J023123A16;Manual Curation=March 12%2C 2015;Literature_PMID=22136599;Oryzabase=10020;Expression=AK111830;TENOR=Os08t0162100-01;KEGG=Os08t0162100-01
Chr08	irgsp1_rep	five_prime_UTR	3667092	3667647	.	+	.	Parent=Os08t0162100-01
Chr08	irgsp1_rep	CDS	3667648	3667727	.	+	0	Parent=Os08t0162100-01
Chr08	irgsp1_rep	CDS	3667838	3668017	.	+	1	Parent=Os08t0162100-01
Chr08	irgsp1_rep	CDS	3668101	3668214	.	+	1	Parent=Os08t0162100-01
Chr08	irgsp1_rep	CDS	3668319	3668477	.	+	1	Parent=Os08t0162100-01
Chr08	irgsp1_rep	CDS	3669182	3669362	.	+	1	Parent=Os08t0162100-01
Chr08	irgsp1_rep	CDS	3669446	3669572	.	+	0	Parent=Os08t0162100-01
Chr08	irgsp1_rep	CDS	3669666	3669775	.	+	2	Parent=Os08t0162100-01
Chr08	irgsp1_rep	CDS	3669873	3670011	.	+	0	Parent=Os08t0162100-01
Chr08	irgsp1_rep	CDS	3670111	3670220	.	+	2	Parent=Os08t0162100-01
Chr08	irgsp1_rep	CDS	3670346	3670415	.	+	0	Parent=Os08t0162100-01
Chr08	irgsp1_rep	CDS	3670591	3670664	.	+	2	Parent=Os08t0162100-01
Chr08	irgsp1_rep	CDS	3670802	3670897	.	+	0	Parent=Os08t0162100-01
Chr08	irgsp1_rep	CDS	3671026	3671121	.	+	0	Parent=Os08t0162100-01
Chr08	irgsp1_rep	CDS	3671385	3671512	.	+	0	Parent=Os08t0162100-01
Chr08	irgsp1_rep	CDS	3671766	3672000	.	+	1	Parent=Os08t0162100-01
Chr08	irgsp1_rep	CDS	3672087	3672254	.	+	0	Parent=Os08t0162100-01
Chr08	irgsp1_rep	CDS	3672618	3672725	.	+	0	Parent=Os08t0162100-01
Chr08	irgsp1_rep	CDS	3672812	3672961	.	+	0	Parent=Os08t0162100-01
Chr08	irgsp1_rep	CDS	3673249	3673359	.	+	0	Parent=Os08t0162100-01
Chr08	irgsp1_rep	CDS	3673462	3673641	.	+	0	Parent=Os08t0162100-01
Chr08	irgsp1_rep	CDS	3673771	3673899	.	+	0	Parent=Os08t0162100-01
Chr08	irgsp1_rep	CDS	3674163	3674258	.	+	0	Parent=Os08t0162100-01
Chr08	irgsp1_rep	CDS	3674452	3674637	.	+	0	Parent=Os08t0162100-01
Chr08	irgsp1_rep	CDS	3674775	3674947	.	+	0	Parent=Os08t0162100-01
Chr08	irgsp1_rep	CDS	3675064	3675265	.	+	1	Parent=Os08t0162100-01
Chr08	irgsp1_rep	three_prime_UTR	3675266	3675772	.	+	.	Parent=Os08t0162100-01
Chr08	irgsp1_rep	mRNA	3672696	3675718	.	+	.	ID=Os08t0162100-02;Name=Os08t0162100-02;Locus_id=Os08g0162100;CGSNL Gene Symbol=ASP1;CGSNL Gene Name=ABERRANT SPIKELET AND PANICLE 1;Oryzabase Gene Symbol Synonym(s)=OsLIS-L1%2C OsWD40-155%2C ASP1%2C TPR2%2C OsTPR2%2C OsREL2%2C REL2%2C OsTPL3%2C TPL3;Oryzabase Gene Name Synonym(s)=Lissencephaly type-1-like 1%2C ABERRANT SPIKELET AND PANICLE1%2C TOPLESS-RELATED PROTEIN 2%2C TOPLESS 3;Note=Similar to predicted protein.;Transcript_evidence=AK111915 (DDBJ%2C Best hit);ORF_evidence=NP_001167872.2 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J033131E20;Oryzabase=10020;Expression=AK111915;TENOR=Os08t0162100-02;KEGG=Os08t0162100-02
Chr08	irgsp1_rep	CDS	3672696	3672725	.	+	0	Parent=Os08t0162100-02
Chr08	irgsp1_rep	CDS	3672812	3672961	.	+	0	Parent=Os08t0162100-02
Chr08	irgsp1_rep	CDS	3673249	3673359	.	+	0	Parent=Os08t0162100-02
Chr08	irgsp1_rep	CDS	3673462	3673641	.	+	0	Parent=Os08t0162100-02
Chr08	irgsp1_rep	CDS	3673771	3673899	.	+	0	Parent=Os08t0162100-02
Chr08	irgsp1_rep	CDS	3674163	3674258	.	+	0	Parent=Os08t0162100-02
Chr08	irgsp1_rep	CDS	3674452	3674637	.	+	0	Parent=Os08t0162100-02
Chr08	irgsp1_rep	CDS	3674775	3674947	.	+	0	Parent=Os08t0162100-02
Chr08	irgsp1_rep	CDS	3675064	3675265	.	+	1	Parent=Os08t0162100-02
Chr08	irgsp1_rep	three_prime_UTR	3675266	3675718	.	+	.	Parent=Os08t0162100-02
Chr08	irgsp1_rep	mRNA	3677031	3679364	.	+	.	ID=Os08t0162200-01;Name=Os08t0162200-01;Locus_id=Os08g0162200;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK106876 (DDBJ%2C Best hit);ORF_evidence=F2E8M6 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-118-E03;Expression=AK106876;TENOR=Os08t0162200-01;KEGG=Os08t0162200-01
Chr08	irgsp1_rep	five_prime_UTR	3677031	3677101	.	+	.	Parent=Os08t0162200-01
Chr08	irgsp1_rep	CDS	3677102	3678709	.	+	0	Parent=Os08t0162200-01
Chr08	irgsp1_rep	three_prime_UTR	3678710	3678831	.	+	.	Parent=Os08t0162200-01
Chr08	irgsp1_rep	three_prime_UTR	3678907	3679364	.	+	.	Parent=Os08t0162200-01
Chr08	irgsp1_rep	mRNA	3682111	3682488	.	+	.	ID=Os08t0162250-00;Name=Os08t0162250-00;Locus_id=Os08g0162250;Note=Hypothetical conserved gene.;Transcript_evidence=EU970947 (DDBJ);ORF_evidence=A3BPW9 (UniProt);TENOR=Os08t0162250-00;KEGG=Os08t0162250-00
Chr08	irgsp1_rep	CDS	3682111	3682488	.	+	0	Parent=Os08t0162250-00
Chr08	irgsp1_rep	mRNA	3683916	3688230	.	+	.	ID=Os08t0162300-01;Name=Os08t0162300-01;Locus_id=Os08g0162300;Note=Hypothetical protein.;Transcript_evidence=AK067263 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013096G17;TENOR=Os08t0162300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	3683916	3684469	.	+	.	Parent=Os08t0162300-01
Chr08	irgsp1_rep	five_prime_UTR	3686263	3687264	.	+	.	Parent=Os08t0162300-01
Chr08	irgsp1_rep	CDS	3687265	3687789	.	+	0	Parent=Os08t0162300-01
Chr08	irgsp1_rep	three_prime_UTR	3687790	3688230	.	+	.	Parent=Os08t0162300-01
Chr08	irgsp1_rep	mRNA	3686057	3688009	.	-	.	ID=Os08t0162400-01;Name=Os08t0162400-01;Locus_id=Os08g0162400;CGSNL Gene Symbol=DLN204;CGSNL Gene Name=DLN REPRESSOR 204;Oryzabase Gene Symbol Synonym(s)=OsDLN204;Oryzabase Gene Name Synonym(s)=DLN repressor 204%2C DLN motif protein 204;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK063453 (DDBJ%2C Best hit);ORF_evidence=B6TDS7 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=001-115-G04;Oryzabase=23225;Expression=AK063453;TENOR=Os08t0162400-01;KEGG=Os08t0162400-01
Chr08	irgsp1_rep	five_prime_UTR	3687599	3688009	.	-	.	Parent=Os08t0162400-01
Chr08	irgsp1_rep	CDS	3686231	3687598	.	-	0	Parent=Os08t0162400-01
Chr08	irgsp1_rep	three_prime_UTR	3686057	3686230	.	-	.	Parent=Os08t0162400-01
Chr08	irgsp1_rep	mRNA	3686062	3687934	.	-	.	ID=Os08t0162400-02;Name=Os08t0162400-02;Locus_id=Os08g0162400;CGSNL Gene Symbol=DLN204;CGSNL Gene Name=DLN REPRESSOR 204;Oryzabase Gene Symbol Synonym(s)=OsDLN204;Oryzabase Gene Name Synonym(s)=DLN repressor 204%2C DLN motif protein 204;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK102462 (DDBJ%2C Best hit);ORF_evidence=B6TDS7 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J033094D12;Oryzabase=23225;Expression=AK102462;TENOR=Os08t0162400-02;KEGG=Os08t0162400-02
Chr08	irgsp1_rep	five_prime_UTR	3687599	3687934	.	-	.	Parent=Os08t0162400-02
Chr08	irgsp1_rep	CDS	3686231	3687598	.	-	0	Parent=Os08t0162400-02
Chr08	irgsp1_rep	three_prime_UTR	3686062	3686230	.	-	.	Parent=Os08t0162400-02
Chr08	irgsp1_rep	mRNA	3690710	3693241	.	+	.	ID=Os08t0162500-01;Name=Os08t0162500-01;Locus_id=Os08g0162500;Note=Conserved hypothetical protein.;Transcript_evidence=AK121633 (DDBJ%2C Best hit);ORF_evidence=B8BAY8 (UniProt);NIAS_FLcDNA=J033050M07;Expression=AK121633;TENOR=Os08t0162500-01;KEGG=Os08t0162500-01
Chr08	irgsp1_rep	five_prime_UTR	3690710	3690834	.	+	.	Parent=Os08t0162500-01
Chr08	irgsp1_rep	CDS	3690835	3690933	.	+	0	Parent=Os08t0162500-01
Chr08	irgsp1_rep	CDS	3691114	3691182	.	+	0	Parent=Os08t0162500-01
Chr08	irgsp1_rep	CDS	3691348	3691377	.	+	0	Parent=Os08t0162500-01
Chr08	irgsp1_rep	CDS	3692110	3692142	.	+	0	Parent=Os08t0162500-01
Chr08	irgsp1_rep	CDS	3692228	3692298	.	+	0	Parent=Os08t0162500-01
Chr08	irgsp1_rep	CDS	3692529	3692610	.	+	1	Parent=Os08t0162500-01
Chr08	irgsp1_rep	CDS	3692814	3692903	.	+	0	Parent=Os08t0162500-01
Chr08	irgsp1_rep	CDS	3692991	3693029	.	+	0	Parent=Os08t0162500-01
Chr08	irgsp1_rep	three_prime_UTR	3693030	3693241	.	+	.	Parent=Os08t0162500-01
Chr08	irgsp1_rep	mRNA	3694305	3696636	.	+	.	ID=Os08t0162600-01;Name=Os08t0162600-01;Locus_id=Os08g0162600;Oryzabase Gene Symbol Synonym(s)=NP122;Oryzabase Gene Name Synonym(s)=Rubredoxin-type Fe(Cys)4 protein family protein;Note=Rubredoxin-type Fe(Cys)4 protein family protein.;Transcript_evidence=AK060121 (DDBJ%2C Best hit);ORF_evidence=NP_568342.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: metal ion binding (GO:0046872);InterPro=PDZ/DHR/GLGF (IPR001478),Rubredoxin-type Fe(Cys)4 protein (IPR004039);NIAS_FLcDNA=006-308-F09;Oryzabase=14980;Expression=AK060121;TENOR=Os08t0162600-01;KEGG=Os08t0162600-01
Chr08	irgsp1_rep	five_prime_UTR	3694305	3694341	.	+	.	Parent=Os08t0162600-01
Chr08	irgsp1_rep	CDS	3694342	3694440	.	+	0	Parent=Os08t0162600-01
Chr08	irgsp1_rep	CDS	3694670	3694864	.	+	0	Parent=Os08t0162600-01
Chr08	irgsp1_rep	CDS	3695563	3695729	.	+	0	Parent=Os08t0162600-01
Chr08	irgsp1_rep	CDS	3695920	3696001	.	+	1	Parent=Os08t0162600-01
Chr08	irgsp1_rep	CDS	3696108	3696176	.	+	0	Parent=Os08t0162600-01
Chr08	irgsp1_rep	CDS	3696283	3696453	.	+	0	Parent=Os08t0162600-01
Chr08	irgsp1_rep	three_prime_UTR	3696454	3696636	.	+	.	Parent=Os08t0162600-01
Chr08	irgsp1_rep	mRNA	3694336	3696597	.	+	.	ID=Os08t0162600-02;Name=Os08t0162600-02;Locus_id=Os08g0162600;Oryzabase Gene Symbol Synonym(s)=NP122;Oryzabase Gene Name Synonym(s)=Rubredoxin-type Fe(Cys)4 protein family protein;Note=Rubredoxin-type Fe(Cys)4 protein family protein.;Transcript_evidence=AK070227 (DDBJ%2C Best hit);ORF_evidence=NP_568342.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: metal ion binding (GO:0046872);InterPro=PDZ/DHR/GLGF (IPR001478),Rubredoxin-type Fe(Cys)4 protein (IPR004039);NIAS_FLcDNA=J023041B21;Oryzabase=14980;Expression=AK070227;TENOR=Os08t0162600-02;KEGG=Os08t0162600-02
Chr08	irgsp1_rep	five_prime_UTR	3694336	3694341	.	+	.	Parent=Os08t0162600-02
Chr08	irgsp1_rep	CDS	3694342	3694440	.	+	0	Parent=Os08t0162600-02
Chr08	irgsp1_rep	CDS	3694670	3694864	.	+	0	Parent=Os08t0162600-02
Chr08	irgsp1_rep	CDS	3695563	3695729	.	+	0	Parent=Os08t0162600-02
Chr08	irgsp1_rep	CDS	3695920	3696001	.	+	1	Parent=Os08t0162600-02
Chr08	irgsp1_rep	CDS	3696108	3696176	.	+	0	Parent=Os08t0162600-02
Chr08	irgsp1_rep	CDS	3696283	3696453	.	+	0	Parent=Os08t0162600-02
Chr08	irgsp1_rep	three_prime_UTR	3696454	3696597	.	+	.	Parent=Os08t0162600-02
Chr08	irgsp1_rep	mRNA	3696341	3696637	.	+	.	ID=Os08t0162600-03;Name=Os08t0162600-03;Locus_id=Os08g0162600;Oryzabase Gene Symbol Synonym(s)=NP122;Oryzabase Gene Name Synonym(s)=Rubredoxin-type Fe(Cys)4 protein family protein;Note=Similar to predicted protein.;Transcript_evidence=AK060661 (DDBJ%2C Best hit);ORF_evidence=NP_568342.1 (RefSeq);NIAS_FLcDNA=001-028-B02;Oryzabase=14980;Expression=AK060661;TENOR=Os08t0162600-03;KEGG=Os08t0162600-03
Chr08	irgsp1_rep	five_prime_UTR	3696341	3696342	.	+	.	Parent=Os08t0162600-03
Chr08	irgsp1_rep	CDS	3696343	3696453	.	+	0	Parent=Os08t0162600-03
Chr08	irgsp1_rep	three_prime_UTR	3696454	3696637	.	+	.	Parent=Os08t0162600-03
Chr08	irgsp1_rep	mRNA	3696942	3698017	.	-	.	ID=Os08t0162650-00;Name=Os08t0162650-00;Locus_id=Os08g0162650;Note=Hypothetical gene.;Transcript_evidence=BT038966 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0162650-00;KEGG=Os08t0162650-00
Chr08	irgsp1_rep	five_prime_UTR	3698016	3698017	.	-	.	Parent=Os08t0162650-00
Chr08	irgsp1_rep	CDS	3697737	3698015	.	-	0	Parent=Os08t0162650-00
Chr08	irgsp1_rep	three_prime_UTR	3696942	3697736	.	-	.	Parent=Os08t0162650-00
Chr08	irgsp1_rep	mRNA	3697393	3698162	.	+	.	ID=Os08t0162700-01;Name=Os08t0162700-01;Locus_id=Os08g0162700;Note=Aldehyde dehydrogenase%2C conserved site domain containing protein.;Transcript_evidence=AK062732 (DDBJ%2C Best hit);ORF_evidence=A3BPX3 (UniProt);NIAS_FLcDNA=001-106-E06;Expression=AK062732;TENOR=Os08t0162700-01;KEGG=Os08t0162700-01
Chr08	irgsp1_rep	five_prime_UTR	3697393	3697460	.	+	.	Parent=Os08t0162700-01
Chr08	irgsp1_rep	CDS	3697461	3698051	.	+	0	Parent=Os08t0162700-01
Chr08	irgsp1_rep	three_prime_UTR	3698052	3698162	.	+	.	Parent=Os08t0162700-01
Chr08	irgsp1_rep	mRNA	3698349	3700499	.	-	.	ID=Os08t0162800-01;Name=Os08t0162800-01;Locus_id=Os08g0162800;RAP-DB Gene Symbol Synonym(s)=OsACBP1;RAP-DB Gene Name Synonym(s)=Acyl-CoA-binding protein%2C Acyl-CoA-binding protein 1;CGSNL Gene Symbol=ACBP1;CGSNL Gene Name=ACYL-COA-BINDING PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsACBP1;Oryzabase Gene Name Synonym(s)=Acyl-CoA-binding protein%2C Acyl-CoA-binding protein 1;Note=Acyl-CoA-binding protein %2C Stress response;Transcript_evidence=AK059406,AK122061;ORF_evidence=Q84SC3;GO=Molecular Function: fatty-acyl-CoA binding (GO:0000062);InterPro=FERM/acyl-CoA-binding protein%2C 3-helical bundle (IPR014352),Acyl-CoA-binding protein%2C ACBP (IPR000582),Acyl-CoA-binding protein%2C ACBP%2C conserved site (IPR022408);NIAS_FLcDNA=J033115J15,001-027-C02;Manual Curation=February 16%2C 2015;Literature_PMID=24738983,21128943;Oryzabase=16026;TENOR=Os08t0162800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	3700440	3700499	.	-	.	Parent=Os08t0162800-01
Chr08	irgsp1_rep	CDS	3700428	3700439	.	-	0	Parent=Os08t0162800-01
Chr08	irgsp1_rep	CDS	3699577	3699694	.	-	0	Parent=Os08t0162800-01
Chr08	irgsp1_rep	CDS	3698786	3698848	.	-	2	Parent=Os08t0162800-01
Chr08	irgsp1_rep	CDS	3698591	3698673	.	-	2	Parent=Os08t0162800-01
Chr08	irgsp1_rep	three_prime_UTR	3698349	3698590	.	-	.	Parent=Os08t0162800-01
Chr08	irgsp1_rep	mRNA	3702590	3702903	.	-	.	ID=Os08t0162900-00;Name=Os08t0162900-00;Locus_id=Os08g0162900;Note=Similar to 60S ribosomal protein L13.;Transcript_evidence=AJ222784 (DDBJ);ORF_evidence=Q8S9G2 (UniProt);TENOR=Os08t0162900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	3702643	3702903	.	-	0	Parent=Os08t0162900-00
Chr08	irgsp1_rep	three_prime_UTR	3702590	3702642	.	-	.	Parent=Os08t0162900-00
Chr08	irgsp1_rep	mRNA	3722366	3726241	.	-	.	ID=Os08t0163100-01;Name=Os08t0163100-01;Locus_id=Os08g0163100;Note=Nuf2 family protein.;Transcript_evidence=AK064406 (DDBJ%2C Best hit);ORF_evidence=NP_001150069.1 (RefSeq);GO=Biological Process: mitosis (GO:0007067),Cellular Component: Chromosome%2C centromeric region (GO:0000775);InterPro=Kinetochore protein Nuf2 (IPR005549);NIAS_FLcDNA=002-108-H09;Expression=AK064406;TENOR=Os08t0163100-01;KEGG=Os08t0163100-01
Chr08	irgsp1_rep	five_prime_UTR	3726179	3726241	.	-	.	Parent=Os08t0163100-01
Chr08	irgsp1_rep	CDS	3726003	3726178	.	-	0	Parent=Os08t0163100-01
Chr08	irgsp1_rep	CDS	3725608	3725920	.	-	1	Parent=Os08t0163100-01
Chr08	irgsp1_rep	CDS	3725337	3725516	.	-	0	Parent=Os08t0163100-01
Chr08	irgsp1_rep	CDS	3724838	3724927	.	-	0	Parent=Os08t0163100-01
Chr08	irgsp1_rep	CDS	3724187	3724294	.	-	0	Parent=Os08t0163100-01
Chr08	irgsp1_rep	CDS	3723855	3723908	.	-	0	Parent=Os08t0163100-01
Chr08	irgsp1_rep	CDS	3723647	3723761	.	-	0	Parent=Os08t0163100-01
Chr08	irgsp1_rep	CDS	3723381	3723538	.	-	2	Parent=Os08t0163100-01
Chr08	irgsp1_rep	CDS	3723000	3723095	.	-	0	Parent=Os08t0163100-01
Chr08	irgsp1_rep	CDS	3722803	3722925	.	-	0	Parent=Os08t0163100-01
Chr08	irgsp1_rep	three_prime_UTR	3722793	3722802	.	-	.	Parent=Os08t0163100-01
Chr08	irgsp1_rep	three_prime_UTR	3722366	3722623	.	-	.	Parent=Os08t0163100-01
Chr08	irgsp1_rep	mRNA	3726538	3727625	.	+	.	ID=Os08t0163200-00;Name=Os08t0163200-00;Locus_id=Os08g0163200;Note=Similar to Mps one binder kinase activator-like 1A.;Transcript_evidence=BT037213 (DDBJ);ORF_evidence=B6U9F2 (UniProt);InterPro=Mob1/phocein (IPR005301);TENOR=Os08t0163200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	3726538	3726769	.	+	.	Parent=Os08t0163200-00
Chr08	irgsp1_rep	CDS	3726770	3726956	.	+	0	Parent=Os08t0163200-00
Chr08	irgsp1_rep	CDS	3727092	3727255	.	+	2	Parent=Os08t0163200-00
Chr08	irgsp1_rep	CDS	3727390	3727461	.	+	0	Parent=Os08t0163200-00
Chr08	irgsp1_rep	three_prime_UTR	3727462	3727625	.	+	.	Parent=Os08t0163200-00
Chr08	irgsp1_rep	mRNA	3728126	3728879	.	-	.	ID=Os08t0163300-00;Name=Os08t0163300-00;Locus_id=Os08g0163300;Note=Similar to delta DNA polymerase.;Transcript_evidence=EU976722 (DDBJ);ORF_evidence=NP_001146925.1 (RefSeq);GO=Biological Process: DNA replication (GO:0006260),Cellular Component: nucleus (GO:0005634);InterPro=DNA polymerase delta%2C subunit 4 (IPR007218);TENOR=Os08t0163300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	3728767	3728879	.	-	.	Parent=Os08t0163300-00
Chr08	irgsp1_rep	CDS	3728311	3728766	.	-	0	Parent=Os08t0163300-00
Chr08	irgsp1_rep	three_prime_UTR	3728126	3728310	.	-	.	Parent=Os08t0163300-00
Chr08	irgsp1_rep	mRNA	3732442	3736138	.	+	.	ID=Os08t0163400-01;Name=Os08t0163400-01;Locus_id=Os08g0163400;CGSNL Gene Symbol=YGL13;CGSNL Gene Name=YELLOW-GREEN LEAF 13;Oryzabase Gene Symbol Synonym(s)=OsSIG1%2C SIG1%2C Os-SigA%2C OsSigA%2C Os Sig1%2C SIGA;Oryzabase Gene Name Synonym(s)=Sigma factor SIG1%2C plastid sigma factor SIG1%2C sigma A%2C sigma factor A%2C yellow-green leaf 13%2C yellow green leaf 13;Note=RNA polymerase sigma-70 domain containing protein.;Transcript_evidence=AK071725 (DDBJ%2C Best hit);ORF_evidence=O48655 (UniProt);GO=Biological Process: transcription initiation%2C DNA-dependent (GO:0006352),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sigma factor activity (GO:0016987);InterPro=RNA polymerase sigma-70 factor (IPR000943),RNA polymerase sigma-70 region 3 (IPR007624),RNA polymerase sigma-70 region 2 (IPR007627),RNA polymerase sigma-70 region 4 (IPR007630),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),RNA polymerase sigma factor%2C region 3/4 (IPR013324),RNA polymerase sigma factor%2C region 2 (IPR013325),RNA polymerase sigma-70 (IPR014284);NIAS_FLcDNA=J023113B05;Oryzabase=9715;Expression=AK071725;TENOR=Os08t0163400-01;KEGG=Os08t0163400-01
Chr08	irgsp1_rep	five_prime_UTR	3732442	3732814	.	+	.	Parent=Os08t0163400-01
Chr08	irgsp1_rep	CDS	3732815	3732817	.	+	0	Parent=Os08t0163400-01
Chr08	irgsp1_rep	CDS	3733048	3733460	.	+	0	Parent=Os08t0163400-01
Chr08	irgsp1_rep	CDS	3733794	3733992	.	+	1	Parent=Os08t0163400-01
Chr08	irgsp1_rep	CDS	3734131	3734223	.	+	0	Parent=Os08t0163400-01
Chr08	irgsp1_rep	CDS	3734345	3734473	.	+	0	Parent=Os08t0163400-01
Chr08	irgsp1_rep	CDS	3734789	3734842	.	+	0	Parent=Os08t0163400-01
Chr08	irgsp1_rep	CDS	3734941	3735018	.	+	0	Parent=Os08t0163400-01
Chr08	irgsp1_rep	CDS	3735117	3735179	.	+	0	Parent=Os08t0163400-01
Chr08	irgsp1_rep	CDS	3735445	3735557	.	+	0	Parent=Os08t0163400-01
Chr08	irgsp1_rep	CDS	3735736	3735844	.	+	1	Parent=Os08t0163400-01
Chr08	irgsp1_rep	three_prime_UTR	3735845	3736138	.	+	.	Parent=Os08t0163400-01
Chr08	irgsp1_rep	mRNA	3732624	3736132	.	+	.	ID=Os08t0163400-02;Name=Os08t0163400-02;Locus_id=Os08g0163400;CGSNL Gene Symbol=YGL13;CGSNL Gene Name=YELLOW-GREEN LEAF 13;Oryzabase Gene Symbol Synonym(s)=OsSIG1%2C SIG1%2C Os-SigA%2C OsSigA%2C Os Sig1%2C SIGA;Oryzabase Gene Name Synonym(s)=Sigma factor SIG1%2C plastid sigma factor SIG1%2C sigma A%2C sigma factor A%2C yellow-green leaf 13%2C yellow green leaf 13;Note=Similar to Plastid RNA polymerase sigma factor.;Transcript_evidence=AK065997 (DDBJ%2C Best hit);ORF_evidence=O48655 (UniProt);GO=Biological Process: transcription initiation%2C DNA-dependent (GO:0006352),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sigma factor activity (GO:0016987);InterPro=RNA polymerase sigma-70 factor (IPR000943),RNA polymerase sigma-70 region 3 (IPR007624),RNA polymerase sigma-70 region 2 (IPR007627),RNA polymerase sigma-70 region 4 (IPR007630),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),RNA polymerase sigma factor%2C region 3/4 (IPR013324),RNA polymerase sigma factor%2C region 2 (IPR013325),RNA polymerase sigma-70 (IPR014284);NIAS_FLcDNA=J013048J01;Oryzabase=9715;TENOR=Os08t0163400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	3732624	3732739	.	+	.	Parent=Os08t0163400-02
Chr08	irgsp1_rep	five_prime_UTR	3733258	3733269	.	+	.	Parent=Os08t0163400-02
Chr08	irgsp1_rep	CDS	3733270	3733460	.	+	0	Parent=Os08t0163400-02
Chr08	irgsp1_rep	CDS	3733794	3733992	.	+	1	Parent=Os08t0163400-02
Chr08	irgsp1_rep	CDS	3734131	3734223	.	+	0	Parent=Os08t0163400-02
Chr08	irgsp1_rep	CDS	3734345	3734473	.	+	0	Parent=Os08t0163400-02
Chr08	irgsp1_rep	CDS	3734789	3734842	.	+	0	Parent=Os08t0163400-02
Chr08	irgsp1_rep	CDS	3734941	3735018	.	+	0	Parent=Os08t0163400-02
Chr08	irgsp1_rep	CDS	3735117	3735179	.	+	0	Parent=Os08t0163400-02
Chr08	irgsp1_rep	CDS	3735445	3735557	.	+	0	Parent=Os08t0163400-02
Chr08	irgsp1_rep	CDS	3735736	3735844	.	+	1	Parent=Os08t0163400-02
Chr08	irgsp1_rep	three_prime_UTR	3735845	3736132	.	+	.	Parent=Os08t0163400-02
Chr08	irgsp1_rep	mRNA	3740193	3745385	.	+	.	ID=Os08t0163500-01;Name=Os08t0163500-01;Locus_id=Os08g0163500;Note=Protein of unknown function DUF1005 family protein.;Transcript_evidence=AK060560 (DDBJ%2C Best hit);ORF_evidence=A2YRJ2 (UniProt);InterPro=Protein of unknown function DUF1005 (IPR010410);NIAS_FLcDNA=001-022-F11;Expression=AK060560;TENOR=Os08t0163500-01;KEGG=Os08t0163500-01
Chr08	irgsp1_rep	five_prime_UTR	3740193	3740543	.	+	.	Parent=Os08t0163500-01
Chr08	irgsp1_rep	five_prime_UTR	3743733	3743772	.	+	.	Parent=Os08t0163500-01
Chr08	irgsp1_rep	CDS	3743773	3744350	.	+	0	Parent=Os08t0163500-01
Chr08	irgsp1_rep	CDS	3744427	3745168	.	+	1	Parent=Os08t0163500-01
Chr08	irgsp1_rep	three_prime_UTR	3745169	3745385	.	+	.	Parent=Os08t0163500-01
Chr08	irgsp1_rep	mRNA	3741345	3742419	.	-	.	ID=Os08t0163600-00;Name=Os08t0163600-00;Locus_id=Os08g0163600;Note=Late embryogenesis abundant protein%2C LEA-14 domain containing protein.;Transcript_evidence=BT069206 (DDBJ);ORF_evidence=NP_001061066.2 (RefSeq);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);TENOR=Os08t0163600-00
Chr08	irgsp1_rep	CDS	3741499	3742419	.	-	0	Parent=Os08t0163600-00
Chr08	irgsp1_rep	three_prime_UTR	3741345	3741498	.	-	.	Parent=Os08t0163600-00
Chr08	irgsp1_rep	mRNA	3746596	3747278	.	+	.	ID=Os08t0163700-00;Name=Os08t0163700-00;Locus_id=Os08g0163700;Note=Conserved hypothetical protein.;Transcript_evidence=AK375159 (DDBJ);ORF_evidence=Q84S46 (UniProt);TENOR=Os08t0163700-00
Chr08	irgsp1_rep	five_prime_UTR	3746596	3746687	.	+	.	Parent=Os08t0163700-00
Chr08	irgsp1_rep	CDS	3746688	3747278	.	+	0	Parent=Os08t0163700-00
Chr08	irgsp1_rep	mRNA	3748224	3749873	.	+	.	ID=Os08t0163800-01;Name=Os08t0163800-01;Locus_id=Os08g0163800;Note=Similar to Anti-silencing protein 1.;Transcript_evidence=AK107012 (DDBJ%2C Best hit);ORF_evidence=B9FZ79 (UniProt);InterPro=Lateral organ boundaries%2C LOB (IPR004883);NIAS_FLcDNA=002-120-F04;Expression=AK107012;TENOR=Os08t0163800-01;KEGG=Os08t0163800-01
Chr08	irgsp1_rep	five_prime_UTR	3748224	3749077	.	+	.	Parent=Os08t0163800-01
Chr08	irgsp1_rep	CDS	3749078	3749668	.	+	0	Parent=Os08t0163800-01
Chr08	irgsp1_rep	three_prime_UTR	3749669	3749873	.	+	.	Parent=Os08t0163800-01
Chr08	irgsp1_rep	mRNA	3748829	3749616	.	-	.	ID=Os08t0163850-01;Name=Os08t0163850-01;Locus_id=Os08g0163850;Note=Helix-turn-helix%2C Fis-type domain containing protein.;Transcript_evidence=AK318588 (DDBJ%2C Best hit);ORF_evidence=NP_001175395.1 (RefSeq);NIAS_FLcDNA=J100031M13;TENOR=Os08t0163850-01;KEGG=Os08t0163850-01
Chr08	irgsp1_rep	five_prime_UTR	3749435	3749616	.	-	.	Parent=Os08t0163850-01
Chr08	irgsp1_rep	CDS	3749075	3749434	.	-	0	Parent=Os08t0163850-01
Chr08	irgsp1_rep	three_prime_UTR	3748829	3749074	.	-	.	Parent=Os08t0163850-01
Chr08	irgsp1_rep	mRNA	3753613	3754795	.	-	.	ID=Os08t0163900-00;Name=Os08t0163900-00;Locus_id=Os08g0163900;Note=Protein of unknown function DUF569 domain containing protein.;Transcript_evidence=EU964929 (DDBJ);ORF_evidence=Q84S44 (UniProt);InterPro=Protein of unknown function DUF569 (IPR007679);TENOR=Os08t0163900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	3754172	3754795	.	-	0	Parent=Os08t0163900-00
Chr08	irgsp1_rep	CDS	3753613	3753885	.	-	0	Parent=Os08t0163900-00
Chr08	irgsp1_rep	mRNA	3757316	3760828	.	-	.	ID=Os08t0164000-01;Name=Os08t0164000-01;Locus_id=Os08g0164000;Note=Protein of unknown function DUF569 family protein.;Transcript_evidence=AK106838 (DDBJ%2C Best hit);ORF_evidence=B9FZ80 (UniProt);NIAS_FLcDNA=002-116-G10;Expression=AK106838;TENOR=Os08t0164000-01;KEGG=Os08t0164000-01
Chr08	irgsp1_rep	five_prime_UTR	3760685	3760828	.	-	.	Parent=Os08t0164000-01
Chr08	irgsp1_rep	CDS	3760250	3760684	.	-	0	Parent=Os08t0164000-01
Chr08	irgsp1_rep	CDS	3759645	3760163	.	-	0	Parent=Os08t0164000-01
Chr08	irgsp1_rep	CDS	3759164	3759481	.	-	0	Parent=Os08t0164000-01
Chr08	irgsp1_rep	CDS	3758705	3758990	.	-	0	Parent=Os08t0164000-01
Chr08	irgsp1_rep	CDS	3757670	3757752	.	-	2	Parent=Os08t0164000-01
Chr08	irgsp1_rep	three_prime_UTR	3757316	3757669	.	-	.	Parent=Os08t0164000-01
Chr08	irgsp1_rep	mRNA	3763274	3764796	.	-	.	ID=Os08t0164100-01;Name=Os08t0164100-01;Locus_id=Os08g0164100;Oryzabase Gene Symbol Synonym(s)=Os_F0733;Note=Protein of unknown function DUF295 family protein.;Transcript_evidence=AK108589 (DDBJ%2C Best hit);ORF_evidence=A2YRJ7 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174);NIAS_FLcDNA=002-146-C07;Oryzabase=17455;Expression=AK108589;TENOR=Os08t0164100-01;KEGG=Os08t0164100-01
Chr08	irgsp1_rep	five_prime_UTR	3764750	3764796	.	-	.	Parent=Os08t0164100-01
Chr08	irgsp1_rep	CDS	3763454	3764749	.	-	0	Parent=Os08t0164100-01
Chr08	irgsp1_rep	three_prime_UTR	3763274	3763453	.	-	.	Parent=Os08t0164100-01
Chr08	irgsp1_rep	mRNA	3770473	3772675	.	+	.	ID=Os08t0164300-01;Name=Os08t0164300-01;Locus_id=Os08g0164300;Note=Protein of unknown function DUF569 family protein.;Transcript_evidence=AK106864 (DDBJ%2C Best hit);ORF_evidence=B9FZ81 (UniProt);InterPro=Protein of unknown function DUF569 (IPR007679),Actin cross-linking (IPR008999);NIAS_FLcDNA=002-118-C10;Expression=AK106864;TENOR=Os08t0164300-01;KEGG=Os08t0164300-01
Chr08	irgsp1_rep	five_prime_UTR	3770473	3770509	.	+	.	Parent=Os08t0164300-01
Chr08	irgsp1_rep	CDS	3770510	3771196	.	+	0	Parent=Os08t0164300-01
Chr08	irgsp1_rep	CDS	3771349	3771628	.	+	0	Parent=Os08t0164300-01
Chr08	irgsp1_rep	CDS	3772363	3772403	.	+	2	Parent=Os08t0164300-01
Chr08	irgsp1_rep	three_prime_UTR	3772404	3772675	.	+	.	Parent=Os08t0164300-01
Chr08	irgsp1_rep	mRNA	3819086	3820090	.	-	.	ID=Os08t0165300-01;Name=Os08t0165300-01;Locus_id=Os08g0165300;Note=Conserved hypothetical protein.;Transcript_evidence=AK109581 (DDBJ%2C Best hit);ORF_evidence=Q2RAP5 (UniProt);NIAS_FLcDNA=002-137-A05;TENOR=Os08t0165300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	3819449	3820090	.	-	.	Parent=Os08t0165300-01
Chr08	irgsp1_rep	CDS	3819263	3819448	.	-	0	Parent=Os08t0165300-01
Chr08	irgsp1_rep	three_prime_UTR	3819086	3819262	.	-	.	Parent=Os08t0165300-01
Chr08	irgsp1_rep	mRNA	3834345	3834999	.	+	.	ID=Os08t0165601-00;Name=Os08t0165601-00;Locus_id=Os08g0165601;Note=Hypothetical conserved gene.;Transcript_evidence=CT836035 (DDBJ%2C Best hit);ORF_evidence=NP_001176757.1 (RefSeq);TENOR=Os08t0165601-00;KEGG=Os08t0165601-00
Chr08	irgsp1_rep	five_prime_UTR	3834345	3834691	.	+	.	Parent=Os08t0165601-00
Chr08	irgsp1_rep	CDS	3834692	3834934	.	+	0	Parent=Os08t0165601-00
Chr08	irgsp1_rep	three_prime_UTR	3834935	3834999	.	+	.	Parent=Os08t0165601-00
Chr08	irgsp1_rep	mRNA	3839189	3842346	.	+	.	ID=Os08t0165800-00;Name=Os08t0165800-00;Locus_id=Os08g0165800;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;GO=Molecular Function: endodeoxyribonuclease activity%2C producing 5'-phosphomonoesters (GO:0016888);InterPro=Deoxyribonuclease%2C TatD (IPR015992);TENOR=Os08t0165800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	3839189	3839220	.	+	0	Parent=Os08t0165800-00
Chr08	irgsp1_rep	CDS	3839504	3839591	.	+	1	Parent=Os08t0165800-00
Chr08	irgsp1_rep	CDS	3839714	3840108	.	+	0	Parent=Os08t0165800-00
Chr08	irgsp1_rep	CDS	3841249	3841329	.	+	1	Parent=Os08t0165800-00
Chr08	irgsp1_rep	CDS	3842009	3842092	.	+	1	Parent=Os08t0165800-00
Chr08	irgsp1_rep	CDS	3842271	3842346	.	+	1	Parent=Os08t0165800-00
Chr08	irgsp1_rep	mRNA	3844469	3845136	.	+	.	ID=Os08t0165901-00;Name=Os08t0165901-00;Locus_id=Os08g0165901;Note=Similar to H0402C08.3 protein.;Transcript_evidence=CT837716 (DDBJ%2C Best hit);ORF_evidence=Q259J5 (UniProt);TENOR=Os08t0165901-00;KEGG=Os08t0165901-00
Chr08	irgsp1_rep	five_prime_UTR	3844469	3844496	.	+	.	Parent=Os08t0165901-00
Chr08	irgsp1_rep	CDS	3844497	3845006	.	+	0	Parent=Os08t0165901-00
Chr08	irgsp1_rep	three_prime_UTR	3845007	3845136	.	+	.	Parent=Os08t0165901-00
Chr08	irgsp1_rep	mRNA	3859642	3861422	.	+	.	ID=Os08t0166400-01;Name=Os08t0166400-01;Locus_id=Os08g0166400;Note=Zinc finger%2C PMZ-type domain containing protein.;Transcript_evidence=AK110809 (DDBJ%2C Best hit);ORF_evidence=B9FZ94 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);NIAS_FLcDNA=002-171-F03;TENOR=Os08t0166400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	3859642	3861147	.	+	0	Parent=Os08t0166400-01
Chr08	irgsp1_rep	three_prime_UTR	3861148	3861422	.	+	.	Parent=Os08t0166400-01
Chr08	irgsp1_rep	mRNA	3864077	3865941	.	+	.	ID=Os08t0166500-01;Name=Os08t0166500-01;Locus_id=Os08g0166500;Note=Conserved hypothetical protein.;Transcript_evidence=AK103907 (DDBJ%2C Best hit);ORF_evidence=B9FZ94 (UniProt);NIAS_FLcDNA=J033150N21;TENOR=Os08t0166500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	3864077	3864077	.	+	.	Parent=Os08t0166500-01
Chr08	irgsp1_rep	CDS	3864078	3864263	.	+	0	Parent=Os08t0166500-01
Chr08	irgsp1_rep	three_prime_UTR	3864264	3864405	.	+	.	Parent=Os08t0166500-01
Chr08	irgsp1_rep	three_prime_UTR	3864575	3865941	.	+	.	Parent=Os08t0166500-01
Chr08	irgsp1_rep	mRNA	3880693	3881094	.	+	.	ID=Os08t0166750-00;Name=Os08t0166750-00;Locus_id=Os08g0166750;Note=Hypothetical protein.;Transcript_evidence=AK372466 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0166750-00
Chr08	irgsp1_rep	CDS	3880693	3881094	.	+	0	Parent=Os08t0166750-00
Chr08	irgsp1_rep	mRNA	3928463	3933577	.	+	.	ID=Os08t0167000-01;Name=Os08t0167000-01;Locus_id=Os08g0167000;RAP-DB Gene Symbol Synonym(s)=OsABCG18;CGSNL Gene Symbol=ABCG18;CGSNL Gene Name=ABC TRANSPORTER G FAMILY MEMBER 18;Oryzabase Gene Symbol Synonym(s)=OsABCG18;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 18;Note=ABC Transporter%2C Half-size ATP-binding cassette transporter%2C Control of long-distance transport of cytokinins from root to shoot%2C Promotion of grain yield;Transcript_evidence=AK243528;ORF_evidence=Q6YYM2;GO=Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Cellular Component: membrane (GO:0016020);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),ABC transporter-like (IPR003439),AAA+ ATPase domain (IPR003593),ABC-2 type transporter (IPR013525),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=J100075P19;Manual Curation=September 2%2C 2019;Literature_PMID=DOI:10.1093/jxb/erz382;Oryzabase=11995;TENOR=Os08t0167000-01;KEGG=Os08t0167000-01;Subcellular location=plasma membrane (GO:0005886)
Chr08	irgsp1_rep	five_prime_UTR	3928463	3928745	.	+	.	Parent=Os08t0167000-01
Chr08	irgsp1_rep	CDS	3928746	3929051	.	+	0	Parent=Os08t0167000-01
Chr08	irgsp1_rep	CDS	3929284	3930160	.	+	0	Parent=Os08t0167000-01
Chr08	irgsp1_rep	CDS	3932085	3933175	.	+	2	Parent=Os08t0167000-01
Chr08	irgsp1_rep	three_prime_UTR	3933176	3933577	.	+	.	Parent=Os08t0167000-01
Chr08	irgsp1_rep	mRNA	3929403	3930162	.	-	.	ID=Os08t0167166-00;Name=Os08t0167166-00;Locus_id=Os08g0167166;Note=Hypothetical gene.;Transcript_evidence=BT084685 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0167166-00;KEGG=Os08t0167166-00
Chr08	irgsp1_rep	five_prime_UTR	3929985	3930162	.	-	.	Parent=Os08t0167166-00
Chr08	irgsp1_rep	CDS	3929643	3929984	.	-	0	Parent=Os08t0167166-00
Chr08	irgsp1_rep	three_prime_UTR	3929403	3929642	.	-	.	Parent=Os08t0167166-00
Chr08	irgsp1_rep	mRNA	3936725	3937252	.	+	.	ID=Os08t0167249-00;Name=Os08t0167249-00;Locus_id=Os08g0167249;Note=Similar to CTV.15.;Transcript_evidence=EU975776 (DDBJ);ORF_evidence=Q8H6R2 (UniProt);TENOR=Os08t0167249-00
Chr08	irgsp1_rep	CDS	3936725	3937252	.	+	0	Parent=Os08t0167249-00
Chr08	irgsp1_rep	mRNA	3941121	3946520	.	-	.	ID=Os08t0167400-00;Name=Os08t0167400-00;Locus_id=Os08g0167400;Note=Hypothetical conserved gene.;Transcript_evidence=AK368301 (DDBJ);ORF_evidence=NP_001175401.1 (RefSeq);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);TENOR=Os08t0167400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	3946486	3946520	.	-	.	Parent=Os08t0167400-00
Chr08	irgsp1_rep	CDS	3946088	3946485	.	-	0	Parent=Os08t0167400-00
Chr08	irgsp1_rep	CDS	3941121	3942474	.	-	1	Parent=Os08t0167400-00
Chr08	irgsp1_rep	mRNA	3949039	3950953	.	+	.	ID=Os08t0167500-01;Name=Os08t0167500-01;Locus_id=Os08g0167500;RAP-DB Gene Symbol Synonym(s)=CRR6%2C OsCRR6;RAP-DB Gene Name Synonym(s)=CHLORORESPIRATORY REDUCTION 6;CGSNL Gene Symbol=CRR6;CGSNL Gene Name=CHLORORESPIRATORY REDUCTION 6;Oryzabase Gene Symbol Synonym(s)=OsCRR6;Note=Stromal protein%2C Required for accumulation of sub-complex A of the chloroplast NDH complex;Transcript_evidence=AK071197;ORF_evidence=Q6ZCP8;InterPro=Protein chlororespiratory reduction 6 (IPR014946);NIAS_FLcDNA=J023082N10;Manual Curation=September 2%2C 2020;Literature_PMID=21848656;Oryzabase=20929;Expression=AK071197;TENOR=Os08t0167500-01;KEGG=Os08t0167500-01
Chr08	irgsp1_rep	five_prime_UTR	3949039	3949163	.	+	.	Parent=Os08t0167500-01
Chr08	irgsp1_rep	CDS	3949164	3949374	.	+	0	Parent=Os08t0167500-01
Chr08	irgsp1_rep	CDS	3950063	3950197	.	+	2	Parent=Os08t0167500-01
Chr08	irgsp1_rep	CDS	3950286	3950494	.	+	2	Parent=Os08t0167500-01
Chr08	irgsp1_rep	CDS	3950602	3950808	.	+	0	Parent=Os08t0167500-01
Chr08	irgsp1_rep	three_prime_UTR	3950809	3950953	.	+	.	Parent=Os08t0167500-01
Chr08	irgsp1_rep	mRNA	3949084	3951132	.	+	.	ID=Os08t0167500-02;Name=Os08t0167500-02;Locus_id=Os08g0167500;CGSNL Gene Symbol=CRR6;CGSNL Gene Name=CHLORORESPIRATORY REDUCTION 6;Oryzabase Gene Symbol Synonym(s)=OsCRR6;Note=Protein of unknown function DUF1817 domain containing protein.;Transcript_evidence=AK061061 (DDBJ%2C Best hit);ORF_evidence=NP_566113.1 (RefSeq);InterPro=Protein of unknown function DUF1817 (IPR014946);NIAS_FLcDNA=006-206-A02;Oryzabase=20929;Expression=AK061061;TENOR=Os08t0167500-02;KEGG=Os08t0167500-02
Chr08	irgsp1_rep	five_prime_UTR	3949084	3949163	.	+	.	Parent=Os08t0167500-02
Chr08	irgsp1_rep	CDS	3949164	3949374	.	+	0	Parent=Os08t0167500-02
Chr08	irgsp1_rep	CDS	3950063	3950197	.	+	2	Parent=Os08t0167500-02
Chr08	irgsp1_rep	CDS	3950286	3950494	.	+	2	Parent=Os08t0167500-02
Chr08	irgsp1_rep	CDS	3950602	3950808	.	+	0	Parent=Os08t0167500-02
Chr08	irgsp1_rep	three_prime_UTR	3950809	3951132	.	+	.	Parent=Os08t0167500-02
Chr08	irgsp1_rep	mRNA	3961276	3965426	.	+	.	ID=Os08t0167800-01;Name=Os08t0167800-01;Locus_id=Os08g0167800;Oryzabase Gene Symbol Synonym(s)=TPS%2C OsTPS30;Oryzabase Gene Name Synonym(s)=terpene synthase%2C terpene synthase 30;Note=Similar to Sesquiterpene synthase.;Transcript_evidence=AY647254 (DDBJ);ORF_evidence=C5H3I7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: lyase activity (GO:0016829);InterPro=Terpene synthase-like (IPR001906),Terpene synthase%2C metal-binding domain (IPR005630),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930),Terpenoid synthase (IPR008949);Oryzabase=15538;TENOR=Os08t0167800-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	3961276	3961561	.	+	0	Parent=Os08t0167800-01
Chr08	irgsp1_rep	CDS	3962107	3962470	.	+	2	Parent=Os08t0167800-01
Chr08	irgsp1_rep	CDS	3962561	3962779	.	+	1	Parent=Os08t0167800-01
Chr08	irgsp1_rep	CDS	3964078	3964217	.	+	1	Parent=Os08t0167800-01
Chr08	irgsp1_rep	CDS	3964789	3964829	.	+	2	Parent=Os08t0167800-01
Chr08	irgsp1_rep	three_prime_UTR	3964830	3965034	.	+	.	Parent=Os08t0167800-01
Chr08	irgsp1_rep	three_prime_UTR	3965140	3965426	.	+	.	Parent=Os08t0167800-01
Chr08	irgsp1_rep	mRNA	3972303	3977096	.	+	.	ID=Os08t0168000-01;Name=Os08t0168000-01;Locus_id=Os08g0168000;RAP-DB Gene Symbol Synonym(s)=TPS46;RAP-DB Gene Name Synonym(s)=terpene synthase 46;Oryzabase Gene Symbol Synonym(s)=OsTPS31%2C TPS31%2C OsSTPS%2C TPS46%2C tps46%2C OsTPS46%2C SSBis039%2C OsTPS10%2C TPS10;Oryzabase Gene Name Synonym(s)=terpene synthase 31%2C sesquiterpene synthase;Note=Terpene synthase%2C Resistance to aphids (Rhopalosiphum padi);Transcript_evidence=EU596452;ORF_evidence=C5H3I7;GO=Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: terpene synthase activity (GO:0010333),Molecular Function: lyase activity (GO:0016829);InterPro=Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid (IPR008930),Isoprenoid synthase domain superfamily (IPR008949),Terpene synthase%2C N-terminal domain superfamily (IPR036965),Terpene synthase%2C N-terminal domain (IPR001906),Terpene synthase%2C metal-binding domain (IPR005630),Terpene cyclase-like 1%2C C-terminal domain (IPR034741);Manual Curation=January 22%2C 2020;Literature_PMID=28217135;Oryzabase=18721;TENOR=Os08t0168000-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	3972303	3972425	.	+	0	Parent=Os08t0168000-01
Chr08	irgsp1_rep	CDS	3972806	3973058	.	+	0	Parent=Os08t0168000-01
Chr08	irgsp1_rep	CDS	3973532	3973895	.	+	2	Parent=Os08t0168000-01
Chr08	irgsp1_rep	CDS	3973986	3974204	.	+	1	Parent=Os08t0168000-01
Chr08	irgsp1_rep	CDS	3975450	3975585	.	+	1	Parent=Os08t0168000-01
Chr08	irgsp1_rep	CDS	3976439	3976690	.	+	0	Parent=Os08t0168000-01
Chr08	irgsp1_rep	CDS	3976803	3977096	.	+	0	Parent=Os08t0168000-01
Chr08	irgsp1_rep	mRNA	3984358	3988789	.	+	.	ID=Os08t0168400-00;Name=Os08t0168400-00;Locus_id=Os08g0168400;Note=Similar to Sesquiterpene synthase.;Transcript_evidence=AY647253 (DDBJ);ORF_evidence=C5H3I7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: lyase activity (GO:0016829);InterPro=Terpene synthase-like (IPR001906),Terpene synthase%2C metal-binding domain (IPR005630),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930),Terpenoid synthase (IPR008949);TENOR=Os08t0168400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	3984358	3984498	.	+	0	Parent=Os08t0168400-00
Chr08	irgsp1_rep	CDS	3985658	3985910	.	+	0	Parent=Os08t0168400-00
Chr08	irgsp1_rep	CDS	3985993	3986356	.	+	2	Parent=Os08t0168400-00
Chr08	irgsp1_rep	CDS	3986456	3986678	.	+	1	Parent=Os08t0168400-00
Chr08	irgsp1_rep	three_prime_UTR	3986679	3986697	.	+	.	Parent=Os08t0168400-00
Chr08	irgsp1_rep	three_prime_UTR	3987081	3987196	.	+	.	Parent=Os08t0168400-00
Chr08	irgsp1_rep	three_prime_UTR	3988030	3988275	.	+	.	Parent=Os08t0168400-00
Chr08	irgsp1_rep	three_prime_UTR	3988505	3988789	.	+	.	Parent=Os08t0168400-00
Chr08	irgsp1_rep	mRNA	4018025	4020079	.	+	.	ID=Os08t0168700-00;Name=Os08t0168700-00;Locus_id=Os08g0168700;Note=Similar to cytokinin-O-glucosyltransferase 2.;Transcript_evidence=BT086497 (DDBJ);ORF_evidence=NP_001150098.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os08t0168700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	4018025	4018173	.	+	.	Parent=Os08t0168700-00
Chr08	irgsp1_rep	CDS	4018174	4018345	.	+	0	Parent=Os08t0168700-00
Chr08	irgsp1_rep	CDS	4019142	4020079	.	+	2	Parent=Os08t0168700-00
Chr08	irgsp1_rep	mRNA	4021481	4021555	.	+	.	ID=Os08t0168900-00;Name=Os08t0168900-00;Locus_id=Os08g0168900;Note=Non-protein coding transcript.;Transcript_evidence=X06284 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0168900-00
Chr08	irgsp1_rep	exon	4021481	4021555	.	+	.	Parent=Os08t0168900-00
Chr08	irgsp1_rep	mRNA	4036770	4042210	.	+	.	ID=Os08t0169100-01;Name=Os08t0169100-01;Locus_id=Os08g0169100;Note=Hypothetical gene.;Transcript_evidence=AK288399 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090029F22;TENOR=Os08t0169100-01;KEGG=Os08t0169100-01
Chr08	irgsp1_rep	five_prime_UTR	4036770	4038368	.	+	.	Parent=Os08t0169100-01
Chr08	irgsp1_rep	CDS	4038369	4038635	.	+	0	Parent=Os08t0169100-01
Chr08	irgsp1_rep	three_prime_UTR	4038636	4042210	.	+	.	Parent=Os08t0169100-01
Chr08	irgsp1_rep	mRNA	4053090	4054653	.	+	.	ID=Os08t0169300-00;Name=Os08t0169300-00;Locus_id=Os08g0169300;Note=Similar to Flavonoid 7-O-methyltransferase.;Transcript_evidence=AK250152 (DDBJ);ORF_evidence=Q43771 (UniProt);GO=Molecular Function: O-methyltransferase activity (GO:0008171);InterPro=O-methyltransferase%2C family 2 (IPR001077);TENOR=Os08t0169300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	4053090	4053324	.	+	.	Parent=Os08t0169300-00
Chr08	irgsp1_rep	CDS	4053325	4053443	.	+	0	Parent=Os08t0169300-00
Chr08	irgsp1_rep	CDS	4053676	4054066	.	+	1	Parent=Os08t0169300-00
Chr08	irgsp1_rep	CDS	4054342	4054635	.	+	0	Parent=Os08t0169300-00
Chr08	irgsp1_rep	three_prime_UTR	4054636	4054653	.	+	.	Parent=Os08t0169300-00
Chr08	irgsp1_rep	mRNA	4058250	4058862	.	-	.	ID=Os08t0169400-00;Name=Os08t0169400-00;Locus_id=Os08g0169400;Note=Similar to cytokinin-O-glucosyltransferase 2.;Transcript_evidence=FP091732 (DDBJ);ORF_evidence=NP_001150098.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os08t0169400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	4058862	4058862	.	-	.	Parent=Os08t0169400-00
Chr08	irgsp1_rep	CDS	4058250	4058861	.	-	0	Parent=Os08t0169400-00
Chr08	irgsp1_rep	mRNA	4062129	4062203	.	+	.	ID=Os08t0169500-00;Name=Os08t0169500-00;Locus_id=Os08g0169500;Note=Non-protein coding transcript.;Transcript_evidence=X06283 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0169500-00
Chr08	irgsp1_rep	exon	4062129	4062203	.	+	.	Parent=Os08t0169500-00
Chr08	irgsp1_rep	mRNA	4065431	4069281	.	+	.	ID=Os08t0169600-01;Name=Os08t0169600-01;Locus_id=Os08g0169600;Note=RNA polymerase II transcription factor SIII%2C subunit A domain containing protein.;Transcript_evidence=AK067305 (DDBJ%2C Best hit);ORF_evidence=B9FZA1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Cellular Component: integral to membrane (GO:0016021);InterPro=RNA polymerase II transcription factor SIII%2C subunit A (IPR010684);NIAS_FLcDNA=J013100P11;Expression=AK067305;TENOR=Os08t0169600-01;KEGG=Os08t0169600-01
Chr08	irgsp1_rep	five_prime_UTR	4065431	4065561	.	+	.	Parent=Os08t0169600-01
Chr08	irgsp1_rep	five_prime_UTR	4065739	4065807	.	+	.	Parent=Os08t0169600-01
Chr08	irgsp1_rep	five_prime_UTR	4065983	4065983	.	+	.	Parent=Os08t0169600-01
Chr08	irgsp1_rep	CDS	4065984	4066154	.	+	0	Parent=Os08t0169600-01
Chr08	irgsp1_rep	CDS	4066248	4066391	.	+	0	Parent=Os08t0169600-01
Chr08	irgsp1_rep	three_prime_UTR	4066392	4068303	.	+	.	Parent=Os08t0169600-01
Chr08	irgsp1_rep	three_prime_UTR	4068381	4068450	.	+	.	Parent=Os08t0169600-01
Chr08	irgsp1_rep	three_prime_UTR	4068527	4068571	.	+	.	Parent=Os08t0169600-01
Chr08	irgsp1_rep	three_prime_UTR	4068696	4069281	.	+	.	Parent=Os08t0169600-01
Chr08	irgsp1_rep	mRNA	4069808	4076114	.	-	.	ID=Os08t0169700-01;Name=Os08t0169700-01;Locus_id=Os08g0169700;Note=Similar to predicted protein.;Transcript_evidence=AK121518 (DDBJ%2C Best hit);ORF_evidence=B8BB55 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-type fold (IPR016024),Domain of unknown function DUF2428%2C death-receptor-like (IPR019442);NIAS_FLcDNA=J033027G17;Expression=AK121518;TENOR=Os08t0169700-01;KEGG=Os08t0169700-01
Chr08	irgsp1_rep	five_prime_UTR	4076113	4076114	.	-	.	Parent=Os08t0169700-01
Chr08	irgsp1_rep	CDS	4074433	4076112	.	-	0	Parent=Os08t0169700-01
Chr08	irgsp1_rep	CDS	4073779	4074038	.	-	0	Parent=Os08t0169700-01
Chr08	irgsp1_rep	CDS	4072683	4073277	.	-	1	Parent=Os08t0169700-01
Chr08	irgsp1_rep	CDS	4069958	4072360	.	-	0	Parent=Os08t0169700-01
Chr08	irgsp1_rep	three_prime_UTR	4069808	4069957	.	-	.	Parent=Os08t0169700-01
Chr08	irgsp1_rep	mRNA	4078669	4088877	.	+	.	ID=Os08t0169800-01;Name=Os08t0169800-01;Locus_id=Os08g0169800;Note=HAD-superfamily hydrolase%2C subfamily IA%2C REG-2-like domain containing protein.;Transcript_evidence=AK100074 (DDBJ%2C Best hit);ORF_evidence=B6TNH8 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphoglycolate phosphatase activity (GO:0008967),Molecular Function: hydrolase activity (GO:0016787);InterPro=Haloacid dehalogenase/epoxide hydrolase (IPR005833),Haloacid dehalogenase-like hydrolase (IPR005834),HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 (IPR006402),HAD-superfamily hydrolase%2C subfamily IA%2C variant 1 (IPR006439),HAD-superfamily hydrolase%2C subfamily IA%2C REG-2-like (IPR011949),HAD-like domain (IPR023214);NIAS_FLcDNA=J013170E11;Expression=AK100074;TENOR=Os08t0169800-01;KEGG=Os08t0169800-01
Chr08	irgsp1_rep	five_prime_UTR	4078669	4078712	.	+	.	Parent=Os08t0169800-01
Chr08	irgsp1_rep	CDS	4078713	4078974	.	+	0	Parent=Os08t0169800-01
Chr08	irgsp1_rep	CDS	4079076	4079158	.	+	2	Parent=Os08t0169800-01
Chr08	irgsp1_rep	CDS	4079281	4079364	.	+	0	Parent=Os08t0169800-01
Chr08	irgsp1_rep	CDS	4079853	4079928	.	+	0	Parent=Os08t0169800-01
Chr08	irgsp1_rep	CDS	4080056	4080128	.	+	2	Parent=Os08t0169800-01
Chr08	irgsp1_rep	CDS	4080222	4080295	.	+	1	Parent=Os08t0169800-01
Chr08	irgsp1_rep	CDS	4080502	4080595	.	+	2	Parent=Os08t0169800-01
Chr08	irgsp1_rep	CDS	4080718	4080787	.	+	1	Parent=Os08t0169800-01
Chr08	irgsp1_rep	three_prime_UTR	4080788	4080809	.	+	.	Parent=Os08t0169800-01
Chr08	irgsp1_rep	three_prime_UTR	4088518	4088877	.	+	.	Parent=Os08t0169800-01
Chr08	irgsp1_rep	mRNA	4105460	4107105	.	+	.	ID=Os08t0170100-01;Name=Os08t0170100-01;Locus_id=Os08g0170100;Note=NB-ARC domain containing protein.;Transcript_evidence=AK240816 (DDBJ%2C Best hit);ORF_evidence=Q2RB05 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);NIAS_FLcDNA=J065009A03;TENOR=Os08t0170100-01;KEGG=Os08t0170100-01
Chr08	irgsp1_rep	five_prime_UTR	4105460	4105545	.	+	.	Parent=Os08t0170100-01
Chr08	irgsp1_rep	five_prime_UTR	4105949	4106064	.	+	.	Parent=Os08t0170100-01
Chr08	irgsp1_rep	CDS	4106065	4106907	.	+	0	Parent=Os08t0170100-01
Chr08	irgsp1_rep	three_prime_UTR	4106908	4107105	.	+	.	Parent=Os08t0170100-01
Chr08	irgsp1_rep	mRNA	4111865	4115417	.	+	.	ID=Os08t0170200-00;Name=Os08t0170200-00;Locus_id=Os08g0170200;Note=Disease resistance protein domain containing protein.;Transcript_evidence=tplb0015e22 (Wheat FLcDNA);ORF_evidence=NP_001061091.1 (RefSeq);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os08t0170200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	4111865	4112392	.	+	.	Parent=Os08t0170200-00
Chr08	irgsp1_rep	CDS	4112393	4112700	.	+	0	Parent=Os08t0170200-00
Chr08	irgsp1_rep	CDS	4113386	4115417	.	+	1	Parent=Os08t0170200-00
Chr08	irgsp1_rep	mRNA	4116293	4116981	.	-	.	ID=Os08t0170400-01;Name=Os08t0170400-01;Locus_id=Os08g0170400;Note=Conserved hypothetical protein.;Transcript_evidence=AK242126 (DDBJ%2C Best hit);ORF_evidence=NP_001175405.1 (RefSeq);NIAS_FLcDNA=J075148F01;TENOR=Os08t0170400-01;KEGG=Os08t0170400-01
Chr08	irgsp1_rep	five_prime_UTR	4116815	4116981	.	-	.	Parent=Os08t0170400-01
Chr08	irgsp1_rep	CDS	4116560	4116814	.	-	0	Parent=Os08t0170400-01
Chr08	irgsp1_rep	three_prime_UTR	4116293	4116559	.	-	.	Parent=Os08t0170400-01
Chr08	irgsp1_rep	mRNA	4128336	4128761	.	-	.	ID=Os08t0170500-00;Name=Os08t0170500-00;Locus_id=Os08g0170500;Note=Conserved hypothetical protein.;Transcript_evidence=EU972341 (DDBJ);ORF_evidence=B9FZA5 (UniProt);TENOR=Os08t0170500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	4128756	4128761	.	-	.	Parent=Os08t0170500-00
Chr08	irgsp1_rep	CDS	4128465	4128755	.	-	0	Parent=Os08t0170500-00
Chr08	irgsp1_rep	three_prime_UTR	4128336	4128464	.	-	.	Parent=Os08t0170500-00
Chr08	irgsp1_rep	mRNA	4135126	4138360	.	-	.	ID=Os08t0170700-00;Name=Os08t0170700-00;Locus_id=Os08g0170700;Note=Disease resistance protein domain containing protein.;Transcript_evidence=BT061550 (DDBJ);ORF_evidence=NP_001061092.2 (RefSeq);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os08t0170700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	4138359	4138360	.	-	.	Parent=Os08t0170700-00
Chr08	irgsp1_rep	CDS	4137478	4138358	.	-	0	Parent=Os08t0170700-00
Chr08	irgsp1_rep	CDS	4135126	4137205	.	-	1	Parent=Os08t0170700-00
Chr08	irgsp1_rep	mRNA	4147266	4149998	.	-	.	ID=Os08t0170800-01;Name=Os08t0170800-01;Locus_id=Os08g0170800;Note=Conserved hypothetical protein.;Transcript_evidence=AK106559 (DDBJ%2C Best hit);ORF_evidence=Q6YYL2 (UniProt);NIAS_FLcDNA=002-110-B06;Expression=AK106559;TENOR=Os08t0170800-01;KEGG=Os08t0170800-01
Chr08	irgsp1_rep	five_prime_UTR	4149998	4149998	.	-	.	Parent=Os08t0170800-01
Chr08	irgsp1_rep	CDS	4148870	4149997	.	-	0	Parent=Os08t0170800-01
Chr08	irgsp1_rep	CDS	4148348	4148614	.	-	0	Parent=Os08t0170800-01
Chr08	irgsp1_rep	CDS	4147689	4147706	.	-	0	Parent=Os08t0170800-01
Chr08	irgsp1_rep	three_prime_UTR	4147266	4147688	.	-	.	Parent=Os08t0170800-01
Chr08	irgsp1_rep	mRNA	4153416	4157248	.	-	.	ID=Os08t0170900-01;Name=Os08t0170900-01;Locus_id=Os08g0170900;CGSNL Gene Symbol=CUL3BC;CGSNL Gene Name=CULLIN 3C;Oryzabase Gene Symbol Synonym(s)=OsCUL3c%2C CUL3c;Oryzabase Gene Name Synonym(s)=Cullin3c%2C Cullin 3c;Note=Winged helix repressor DNA-binding domain containing protein.;Transcript_evidence=AK066234 (DDBJ%2C Best hit);ORF_evidence=Q25A70 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Cellular Component: cullin-RING ubiquitin ligase complex (GO:0031461),Molecular Function: ubiquitin protein ligase binding (GO:0031625);InterPro=Cullin%2C N-terminal (IPR001373),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Cullin homology (IPR016158),Cullin repeat-like-containing domain (IPR016159),Cullin protein%2C neddylation domain (IPR019559);NIAS_FLcDNA=J013058A05;Oryzabase=21711;Expression=AK066234;TENOR=Os08t0170900-01;KEGG=Os08t0170900-01
Chr08	irgsp1_rep	five_prime_UTR	4157037	4157248	.	-	.	Parent=Os08t0170900-01
Chr08	irgsp1_rep	CDS	4156879	4157036	.	-	0	Parent=Os08t0170900-01
Chr08	irgsp1_rep	CDS	4153514	4155551	.	-	1	Parent=Os08t0170900-01
Chr08	irgsp1_rep	three_prime_UTR	4153416	4153513	.	-	.	Parent=Os08t0170900-01
Chr08	irgsp1_rep	mRNA	4153416	4154493	.	-	.	ID=Os08t0170900-02;Name=Os08t0170900-02;Locus_id=Os08g0170900;CGSNL Gene Symbol=CUL3BC;CGSNL Gene Name=CULLIN 3C;Oryzabase Gene Symbol Synonym(s)=OsCUL3c%2C CUL3c;Oryzabase Gene Name Synonym(s)=Cullin3c%2C Cullin 3c;Note=Similar to H0306F03.4 protein.;Transcript_evidence=AK061805 (DDBJ%2C Best hit);ORF_evidence=Q25A70 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Cellular Component: cullin-RING ubiquitin ligase complex (GO:0031461),Molecular Function: ubiquitin protein ligase binding (GO:0031625);InterPro=Cullin%2C N-terminal (IPR001373),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Cullin homology (IPR016158),Cullin protein%2C neddylation domain (IPR019559);NIAS_FLcDNA=001-040-A02;Oryzabase=21711;Expression=AK061805;TENOR=Os08t0170900-02;KEGG=Os08t0170900-02
Chr08	irgsp1_rep	five_prime_UTR	4154492	4154493	.	-	.	Parent=Os08t0170900-02
Chr08	irgsp1_rep	CDS	4153514	4154491	.	-	0	Parent=Os08t0170900-02
Chr08	irgsp1_rep	three_prime_UTR	4153416	4153513	.	-	.	Parent=Os08t0170900-02
Chr08	irgsp1_rep	mRNA	4172264	4175556	.	+	.	ID=Os08t0171000-01;Name=Os08t0171000-01;Locus_id=Os08g0171000;Note=Conserved hypothetical protein.;Transcript_evidence=AK071278 (DDBJ%2C Best hit);ORF_evidence=B9G3V0 (UniProt);NIAS_FLcDNA=J023084C16;Expression=AK071278;TENOR=Os08t0171000-01;KEGG=Os08t0171000-01
Chr08	irgsp1_rep	five_prime_UTR	4172264	4172289	.	+	.	Parent=Os08t0171000-01
Chr08	irgsp1_rep	CDS	4172290	4172440	.	+	0	Parent=Os08t0171000-01
Chr08	irgsp1_rep	CDS	4172613	4172773	.	+	2	Parent=Os08t0171000-01
Chr08	irgsp1_rep	CDS	4172872	4172936	.	+	0	Parent=Os08t0171000-01
Chr08	irgsp1_rep	CDS	4173105	4173145	.	+	1	Parent=Os08t0171000-01
Chr08	irgsp1_rep	CDS	4173604	4173692	.	+	2	Parent=Os08t0171000-01
Chr08	irgsp1_rep	CDS	4173778	4173891	.	+	0	Parent=Os08t0171000-01
Chr08	irgsp1_rep	CDS	4174002	4174079	.	+	0	Parent=Os08t0171000-01
Chr08	irgsp1_rep	CDS	4174295	4174360	.	+	0	Parent=Os08t0171000-01
Chr08	irgsp1_rep	CDS	4174806	4174886	.	+	0	Parent=Os08t0171000-01
Chr08	irgsp1_rep	CDS	4174975	4175100	.	+	0	Parent=Os08t0171000-01
Chr08	irgsp1_rep	three_prime_UTR	4175101	4175556	.	+	.	Parent=Os08t0171000-01
Chr08	irgsp1_rep	mRNA	4175878	4176277	.	-	.	ID=Os08t0171100-01;Name=Os08t0171100-01;Locus_id=Os08g0171100;CGSNL Gene Symbol=AP2/EREBP68;CGSNL Gene Name=APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 68;Oryzabase Gene Symbol Synonym(s)=AP2/EREBP#068;Oryzabase Gene Name Synonym(s)=APETALA2/ethylene-responsive element binding protein 68;Note=Similar to WRINKLED1 (Activator of sporamin LUC 1).;Transcript_evidence=AK105232 (DDBJ%2C Best hit);ORF_evidence=Q2TQ33 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471);NIAS_FLcDNA=001-112-D05;Oryzabase=10668;Expression=AK105232;TENOR=Os08t0171100-01;KEGG=Os08t0171100-01
Chr08	irgsp1_rep	CDS	4176098	4176277	.	-	0	Parent=Os08t0171100-01
Chr08	irgsp1_rep	three_prime_UTR	4175878	4176097	.	-	.	Parent=Os08t0171100-01
Chr08	irgsp1_rep	mRNA	4177561	4178512	.	-	.	ID=Os08t0171216-01;Name=Os08t0171216-01;Locus_id=Os08g0171216;Note=Similar to Transcription factor AP2D9.;Transcript_evidence=AK287706 (DDBJ%2C Best hit);ORF_evidence=Q2TQ33 (UniProt);NIAS_FLcDNA=J065131P18;TENOR=Os08t0171216-01;KEGG=Os08t0171216-01
Chr08	irgsp1_rep	five_prime_UTR	4178449	4178512	.	-	.	Parent=Os08t0171216-01
Chr08	irgsp1_rep	CDS	4178008	4178448	.	-	0	Parent=Os08t0171216-01
Chr08	irgsp1_rep	three_prime_UTR	4177561	4178007	.	-	.	Parent=Os08t0171216-01
Chr08	irgsp1_rep	mRNA	4179589	4180539	.	-	.	ID=Os08t0171333-00;Name=Os08t0171333-00;Locus_id=Os08g0171333;Oryzabase Gene Symbol Synonym(s)=OsGRL17;Oryzabase Gene Name Synonym(s)=GRX-like protein 17%2C glutaredoxin-like protein 17;Note=Glutaredoxin domain containing protein.;Transcript_evidence=AK376466 (DDBJ);ORF_evidence=Q6YYK8 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin (IPR002109),Thioredoxin-like fold (IPR012336);Oryzabase=13607;TENOR=Os08t0171333-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	4179589	4180539	.	-	0	Parent=Os08t0171333-00
Chr08	irgsp1_rep	mRNA	4191606	4194980	.	-	.	ID=Os08t0171600-01;Name=Os08t0171600-01;Locus_id=Os08g0171600;Note=RNA polymerase Rpb2%2C domain 6 containing protein.;Transcript_evidence=AK106914 (DDBJ%2C Best hit);ORF_evidence=A3BQ32 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899),Molecular Function: ribonucleoside binding (GO:0032549);InterPro=DNA-directed RNA polymerase%2C subunit 2%2C domain 6 (IPR007120),RNA polymerase%2C beta subunit%2C conserved site (IPR007121),RNA polymerase Rpb2%2C domain 7 (IPR007641),RNA polymerase Rpb2%2C OB-fold (IPR014724),DNA-directed RNA polymerase%2C subunit 2 (IPR015712);NIAS_FLcDNA=002-119-A10;Expression=AK106914;TENOR=Os08t0171600-01;KEGG=Os08t0171600-01 (EC:2.7.7.6)
Chr08	irgsp1_rep	five_prime_UTR	4194979	4194980	.	-	.	Parent=Os08t0171600-01
Chr08	irgsp1_rep	CDS	4194376	4194978	.	-	0	Parent=Os08t0171600-01
Chr08	irgsp1_rep	CDS	4193781	4194052	.	-	0	Parent=Os08t0171600-01
Chr08	irgsp1_rep	CDS	4191878	4192391	.	-	1	Parent=Os08t0171600-01
Chr08	irgsp1_rep	three_prime_UTR	4191606	4191877	.	-	.	Parent=Os08t0171600-01
Chr08	irgsp1_rep	mRNA	4206406	4207866	.	-	.	ID=Os08t0171700-01;Name=Os08t0171700-01;Locus_id=Os08g0171700;Note=Conserved hypothetical protein.;Transcript_evidence=AK240638 (DDBJ%2C Best hit),AK242403 (DDBJ%2C Best hit);ORF_evidence=B8BB64 (UniProt);NIAS_FLcDNA=J013056B06,J080069K01;TENOR=Os08t0171700-01
Chr08	irgsp1_rep	five_prime_UTR	4207805	4207866	.	-	.	Parent=Os08t0171700-01
Chr08	irgsp1_rep	CDS	4207714	4207804	.	-	0	Parent=Os08t0171700-01
Chr08	irgsp1_rep	CDS	4207151	4207188	.	-	2	Parent=Os08t0171700-01
Chr08	irgsp1_rep	CDS	4206903	4206971	.	-	0	Parent=Os08t0171700-01
Chr08	irgsp1_rep	three_prime_UTR	4206406	4206902	.	-	.	Parent=Os08t0171700-01
Chr08	irgsp1_rep	mRNA	4211443	4212914	.	-	.	ID=Os08t0171800-01;Name=Os08t0171800-01;Locus_id=Os08g0171800;Note=Protein of unknown function DUF617%2C plant family protein.;Transcript_evidence=AK068909 (DDBJ%2C Best hit),AK100902 (DDBJ%2C Best hit);ORF_evidence=NP_001150128.1 (RefSeq);InterPro=Protein of unknown function DUF617%2C plant (IPR006460);NIAS_FLcDNA=J023003M02,J023131J04;Expression=AK068909;TENOR=Os08t0171800-01;KEGG=Os08t0171800-01
Chr08	irgsp1_rep	five_prime_UTR	4212854	4212914	.	-	.	Parent=Os08t0171800-01
Chr08	irgsp1_rep	CDS	4211906	4212853	.	-	0	Parent=Os08t0171800-01
Chr08	irgsp1_rep	three_prime_UTR	4211443	4211905	.	-	.	Parent=Os08t0171800-01
Chr08	irgsp1_rep	mRNA	4237020	4242584	.	+	.	ID=Os08t0172200-01;Name=Os08t0172200-01;Locus_id=Os08g0172200;Note=UvrB/UvrC protein domain containing protein.;Transcript_evidence=AK101266 (DDBJ%2C Best hit);ORF_evidence=NP_178438.2 (RefSeq);GO=Biological Process: nucleotide-excision repair (GO:0006289),Molecular Function: DNA binding (GO:0003677),Molecular Function: nuclease activity (GO:0004518);InterPro=UvrB/UvrC protein (IPR001943),Hemimethylated DNA-binding domain (IPR011722);NIAS_FLcDNA=J033032L11;Expression=AK101266;TENOR=Os08t0172200-01;KEGG=Os08t0172200-01
Chr08	irgsp1_rep	five_prime_UTR	4237020	4237338	.	+	.	Parent=Os08t0172200-01
Chr08	irgsp1_rep	five_prime_UTR	4239179	4239275	.	+	.	Parent=Os08t0172200-01
Chr08	irgsp1_rep	CDS	4239276	4239599	.	+	0	Parent=Os08t0172200-01
Chr08	irgsp1_rep	CDS	4239831	4239890	.	+	0	Parent=Os08t0172200-01
Chr08	irgsp1_rep	CDS	4239964	4240055	.	+	0	Parent=Os08t0172200-01
Chr08	irgsp1_rep	CDS	4240149	4240227	.	+	1	Parent=Os08t0172200-01
Chr08	irgsp1_rep	CDS	4240303	4240396	.	+	0	Parent=Os08t0172200-01
Chr08	irgsp1_rep	CDS	4240640	4240752	.	+	2	Parent=Os08t0172200-01
Chr08	irgsp1_rep	CDS	4241155	4241200	.	+	0	Parent=Os08t0172200-01
Chr08	irgsp1_rep	CDS	4241708	4241748	.	+	2	Parent=Os08t0172200-01
Chr08	irgsp1_rep	CDS	4241836	4241991	.	+	0	Parent=Os08t0172200-01
Chr08	irgsp1_rep	three_prime_UTR	4241992	4241994	.	+	.	Parent=Os08t0172200-01
Chr08	irgsp1_rep	three_prime_UTR	4242083	4242584	.	+	.	Parent=Os08t0172200-01
Chr08	irgsp1_rep	mRNA	4242951	4243834	.	+	.	ID=Os08t0172300-01;Name=Os08t0172300-01;Locus_id=Os08g0172300;Note=Similar to H1005F08.16 protein.;Transcript_evidence=AK111274 (DDBJ%2C Best hit);ORF_evidence=Q01MM8 (UniProt);NIAS_FLcDNA=002-180-G06;TENOR=Os08t0172300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	4242951	4243266	.	+	.	Parent=Os08t0172300-01
Chr08	irgsp1_rep	CDS	4243267	4243476	.	+	0	Parent=Os08t0172300-01
Chr08	irgsp1_rep	three_prime_UTR	4243477	4243834	.	+	.	Parent=Os08t0172300-01
Chr08	irgsp1_rep	mRNA	4242959	4249645	.	+	.	ID=Os08t0172300-02;Name=Os08t0172300-02;Locus_id=Os08g0172300;Note=Hypothetical protein.;Transcript_evidence=AK062971 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-109-E04;TENOR=Os08t0172300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	4242959	4243272	.	+	0	Parent=Os08t0172300-02
Chr08	irgsp1_rep	CDS	4249368	4249389	.	+	1	Parent=Os08t0172300-02
Chr08	irgsp1_rep	three_prime_UTR	4249390	4249645	.	+	.	Parent=Os08t0172300-02
Chr08	irgsp1_rep	mRNA	4251640	4251701	.	+	.	ID=Os08t0172433-00;Name=Os08t0172433-00;Locus_id=Os08g0172433;Note=Non-protein coding transcript.;Transcript_evidence=EU941912 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0172433-00
Chr08	irgsp1_rep	exon	4251640	4251701	.	+	.	Parent=Os08t0172433-00
Chr08	irgsp1_rep	mRNA	4254521	4255346	.	-	.	ID=Os08t0172566-00;Name=Os08t0172566-00;Locus_id=Os08g0172566;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);InterPro=Ribonuclease H1%2C N-terminal (IPR011320);TENOR=Os08t0172566-00
Chr08	irgsp1_rep	five_prime_UTR	4255343	4255346	.	-	.	Parent=Os08t0172566-00
Chr08	irgsp1_rep	CDS	4254521	4255342	.	-	0	Parent=Os08t0172566-00
Chr08	irgsp1_rep	mRNA	4268283	4268909	.	+	.	ID=Os08t0172800-01;Name=Os08t0172800-01;Locus_id=Os08g0172800;CGSNL Gene Symbol=PEP2;CGSNL Gene Name=PLANT ELICITOR PEPTIDE 2;Oryzabase Gene Symbol Synonym(s)=OsPep2%2C Pep2%2C OsPROPEP2%2C PROPEP2;Oryzabase Gene Name Synonym(s)=plant elicitor peptide 2;Note=Conserved hypothetical protein.;Transcript_evidence=AK111113 (DDBJ%2C Best hit);ORF_evidence=A2YRQ0 (UniProt);NIAS_FLcDNA=002-176-B02;Oryzabase=22466;Expression=AK111113;TENOR=Os08t0172800-01;KEGG=Os08t0172800-01
Chr08	irgsp1_rep	five_prime_UTR	4268283	4268408	.	+	.	Parent=Os08t0172800-01
Chr08	irgsp1_rep	CDS	4268409	4268690	.	+	0	Parent=Os08t0172800-01
Chr08	irgsp1_rep	three_prime_UTR	4268691	4268909	.	+	.	Parent=Os08t0172800-01
Chr08	irgsp1_rep	mRNA	4290418	4291283	.	+	.	ID=Os08t0173300-01;Name=Os08t0173300-01;Locus_id=Os08g0173300;RAP-DB Gene Symbol Synonym(s)=OsPROPEP3;CGSNL Gene Symbol=PEP3;CGSNL Gene Name=PLANT ELICITOR PEPTIDE 3;Oryzabase Gene Symbol Synonym(s)=OsPep3%2C Pep3%2C OsPROPEP3%2C PROPEP3;Oryzabase Gene Name Synonym(s)=plant elicitor peptide 3;Note=Small peptides%2C Anti-herbivore defense response%2C Response to wounding and oral secretion;Transcript_evidence=AK241700;ORF_evidence=Q6Z4V4;NIAS_FLcDNA=J065196D12;Manual Curation=May 14%2C 2018;Literature_PMID=29513388;Oryzabase=22467;TENOR=Os08t0173300-01;KEGG=Os08t0173300-01
Chr08	irgsp1_rep	five_prime_UTR	4290418	4290535	.	+	.	Parent=Os08t0173300-01
Chr08	irgsp1_rep	CDS	4290536	4291084	.	+	0	Parent=Os08t0173300-01
Chr08	irgsp1_rep	three_prime_UTR	4291085	4291283	.	+	.	Parent=Os08t0173300-01
Chr08	irgsp1_rep	mRNA	4300574	4301421	.	+	.	ID=Os08t0173600-01;Name=Os08t0173600-01;Locus_id=Os08g0173600;CGSNL Gene Symbol=PEP4;CGSNL Gene Name=PLANT ELICITOR PEPTIDE 4;Oryzabase Gene Symbol Synonym(s)=OsPep4%2C Pep4%2C OsPROPEP4%2C PROPEP4;Oryzabase Gene Name Synonym(s)=plant elicitor peptide 4;Note=Conserved hypothetical protein.;Transcript_evidence=AK062724 (DDBJ%2C Best hit);ORF_evidence=B8BB66 (UniProt);NIAS_FLcDNA=001-106-D07;Oryzabase=22468;TENOR=Os08t0173600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	4300574	4300684	.	+	.	Parent=Os08t0173600-01
Chr08	irgsp1_rep	CDS	4300685	4300912	.	+	0	Parent=Os08t0173600-01
Chr08	irgsp1_rep	CDS	4301120	4301142	.	+	0	Parent=Os08t0173600-01
Chr08	irgsp1_rep	CDS	4301199	4301256	.	+	1	Parent=Os08t0173600-01
Chr08	irgsp1_rep	three_prime_UTR	4301257	4301421	.	+	.	Parent=Os08t0173600-01
Chr08	irgsp1_rep	mRNA	4303902	4304696	.	-	.	ID=Os08t0173700-01;Name=Os08t0173700-01;Locus_id=Os08g0173700;CGSNL Gene Symbol=ERF80;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 80;Oryzabase Gene Symbol Synonym(s)=OsERF#080%2C OsERF080%2C OsERF80%2C AP2/EREBP#069%2C AP2/EREBP69;Oryzabase Gene Name Synonym(s)=ethylene response factor 80%2C APETALA2/ethylene-responsive element binding protein 69;Note=Similar to Ethylene-responsive transcription factor 4 (Ethylene-responsive element binding factor 4) (Related to APETALA-2 protein 5) (EREBP-4) (AtERF4).;Transcript_evidence=AK241762 (DDBJ%2C Best hit);ORF_evidence=XP_002326015.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J065205D04;Oryzabase=10587;TENOR=Os08t0173700-01;KEGG=Os08t0173700-01
Chr08	irgsp1_rep	five_prime_UTR	4304633	4304696	.	-	.	Parent=Os08t0173700-01
Chr08	irgsp1_rep	CDS	4304105	4304632	.	-	0	Parent=Os08t0173700-01
Chr08	irgsp1_rep	three_prime_UTR	4303902	4304104	.	-	.	Parent=Os08t0173700-01
Chr08	irgsp1_rep	mRNA	4316158	4317203	.	+	.	ID=Os08t0174000-01;Name=Os08t0174000-01;Locus_id=Os08g0174000;Note=Hypothetical protein.;Transcript_evidence=AK108243 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-140-H03;Expression=AK108243;TENOR=Os08t0174000-01;KEGG=Os08t0174000-01
Chr08	irgsp1_rep	five_prime_UTR	4316158	4316205	.	+	.	Parent=Os08t0174000-01
Chr08	irgsp1_rep	CDS	4316206	4316460	.	+	0	Parent=Os08t0174000-01
Chr08	irgsp1_rep	three_prime_UTR	4316461	4317203	.	+	.	Parent=Os08t0174000-01
Chr08	irgsp1_rep	mRNA	4316104	4318545	.	-	.	ID=Os08t0174100-00;Name=Os08t0174100-00;Locus_id=Os08g0174100;Note=Similar to transferase family protein.;Transcript_evidence=tplb0003j21 (Wheat FLcDNA);ORF_evidence=NP_001151040.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os08t0174100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	4317808	4318545	.	-	0	Parent=Os08t0174100-00
Chr08	irgsp1_rep	CDS	4316104	4316841	.	-	0	Parent=Os08t0174100-00
Chr08	irgsp1_rep	mRNA	4325892	4329843	.	+	.	ID=Os08t0174300-00;Name=Os08t0174300-00;Locus_id=Os08g0174300;Note=Transferase domain containing protein.;Transcript_evidence=CT836021 (DDBJ%2C Best hit);ORF_evidence=NP_001061106.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os08t0174300-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	4325892	4326060	.	+	.	Parent=Os08t0174300-00
Chr08	irgsp1_rep	five_prime_UTR	4326090	4326315	.	+	.	Parent=Os08t0174300-00
Chr08	irgsp1_rep	five_prime_UTR	4326325	4326463	.	+	.	Parent=Os08t0174300-00
Chr08	irgsp1_rep	CDS	4326464	4326715	.	+	0	Parent=Os08t0174300-00
Chr08	irgsp1_rep	CDS	4329085	4329768	.	+	0	Parent=Os08t0174300-00
Chr08	irgsp1_rep	three_prime_UTR	4329769	4329843	.	+	.	Parent=Os08t0174300-00
Chr08	irgsp1_rep	mRNA	4333752	4334822	.	-	.	ID=Os08t0174500-01;Name=Os08t0174500-01;Locus_id=Os08g0174500;RAP-DB Gene Symbol Synonym(s)=HD5%2C Hd5(t)*%2C Hd5%2C qHD5%2C HAP3H%2C OsHAP3H%2C NF-YB%2C CBF-A%2C DTH8%2C qHD5(t)*%2C Ghd8%2C Ghd8/DTH8%2C Lhd1%2C NF-YB11%2C OsNF-YB11;RAP-DB Gene Name Synonym(s)=Heading date (QTL)-5(t)%2C Heading date (QTL)-5(t)%2C Heading date 5%2C HAP3 SUBUNIT OF CCAAT-BOX BINDING COMPLEX%2C days to heading8%2C days to heading on Chromosome 8%2C NUCLEAR FACTOR-Y subunit B11%2C NUCLEAR FACTOR-Y subunit NF-YB11;CGSNL Gene Symbol=HD5;CGSNL Gene Name=Heading date (QTL)-5(t);Oryzabase Gene Symbol Synonym(s)=Hd5(t)*%2C Hd5%2C qHD5%2C HAP3H%2C OsHAP3H%2C NF-YB%2C CBF-A%2C DTH8%2C qHD5(t)*%2C Ghd8%2C Ghd8/DTH8%2C Lhd1%2C NF-YB11%2C OsNF-YB11%2C NFYB11%2C LH8%2C DTH8/Ghd8%2C RH8%2C DTH8/Ghd8/LHD1%2C CAR8%2C DTH8/Ghd8/ OsHAP3H%2C EF8%2C OsEF8;Oryzabase Gene Name Synonym(s)=Heading date (QTL)-5(t)%2C Heading date 5%2C HAP3H SUBUNIT OF CCAAT-BOX BINDING COMPLEX%2C days to heading8%2C days to heading on Chromosome 8%2C NUCLEAR FACTOR-Y subunit B11%2C NUCLEAR FACTOR-Y subunit NF-YB11%2C rice heterosis 8%2C "GRAIN YIELD%2C PLANT HEIGHT AND HEADING DATE 8"%2C Carbon Assimilation Rate 8%2C NF-YB subunit 11%2C NF-YB family 11%2C early flowering 8;Note=Putative HAP3 subunit of the CCAAT box-binding transcription factor%2C Flowering time%2C Short-day promotion%2C Long-day repression;Transcript_evidence=AB124651;ORF_evidence=Q0J7P4;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein heterodimerization activity (GO:0046982),Cellular Component: intracellular (GO:0005622),Cellular Component: nucleus (GO:0005634);InterPro=Histone-fold (IPR009072),Transcription factor CBF/NF-Y/archaeal histone (IPR003958),Transcription factor%2C NFYB/HAP3%2C conserved site (IPR003956);Manual Curation=October 1%2C 2014;Literature_PMID=20566706,23090144;Oryzabase=2034;TENOR=Os08t0174500-00
Chr08	irgsp1_rep	five_prime_UTR	4334740	4334822	.	-	.	Parent=Os08t0174500-01
Chr08	irgsp1_rep	CDS	4333846	4334739	.	-	0	Parent=Os08t0174500-01
Chr08	irgsp1_rep	three_prime_UTR	4333752	4333845	.	-	.	Parent=Os08t0174500-01
Chr08	irgsp1_rep	mRNA	4332106	4334829	.	-	.	ID=Os08t0174500-02;Name=Os08t0174500-02;Locus_id=Os08g0174500;CGSNL Gene Symbol=HD5;CGSNL Gene Name=Heading date (QTL)-5(t);Oryzabase Gene Symbol Synonym(s)=Hd5(t)*%2C Hd5%2C qHD5%2C HAP3H%2C OsHAP3H%2C NF-YB%2C CBF-A%2C DTH8%2C qHD5(t)*%2C Ghd8%2C Ghd8/DTH8%2C Lhd1%2C NF-YB11%2C OsNF-YB11%2C NFYB11%2C LH8%2C DTH8/Ghd8%2C RH8%2C DTH8/Ghd8/LHD1%2C CAR8%2C DTH8/Ghd8/ OsHAP3H%2C EF8%2C OsEF8;Oryzabase Gene Name Synonym(s)=Heading date (QTL)-5(t)%2C Heading date 5%2C HAP3H SUBUNIT OF CCAAT-BOX BINDING COMPLEX%2C days to heading8%2C days to heading on Chromosome 8%2C NUCLEAR FACTOR-Y subunit B11%2C NUCLEAR FACTOR-Y subunit NF-YB11%2C rice heterosis 8%2C "GRAIN YIELD%2C PLANT HEIGHT AND HEADING DATE 8"%2C Carbon Assimilation Rate 8%2C NF-YB subunit 11%2C NF-YB family 11%2C early flowering 8;Note=Similar to Heading date 5.;Transcript_evidence=CT837794 (DDBJ%2C Best hit);ORF_evidence=Q05KQ3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: intracellular (GO:0005622),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Transcription factor%2C NFYB/HAP3%2C conserved site (IPR003956),Transcription factor%2C CBFA/NFYB%2C DNA topoisomerase (IPR003957),Transcription factor CBF/NF-Y/archaeal histone (IPR003958),Histone-fold (IPR009072);Oryzabase=2034
Chr08	irgsp1_rep	five_prime_UTR	4334740	4334829	.	-	.	Parent=Os08t0174500-02
Chr08	irgsp1_rep	CDS	4333951	4334739	.	-	0	Parent=Os08t0174500-02
Chr08	irgsp1_rep	CDS	4332757	4332834	.	-	0	Parent=Os08t0174500-02
Chr08	irgsp1_rep	three_prime_UTR	4332106	4332756	.	-	.	Parent=Os08t0174500-02
Chr08	irgsp1_rep	mRNA	4344171	4350465	.	+	.	ID=Os08t0174700-01;Name=Os08t0174700-01;Locus_id=Os08g0174700;RAP-DB Gene Symbol Synonym(s)=TBP1%2C OsSERK1%2C OsBAK1;RAP-DB Gene Name Synonym(s)=Top Bending Panicle1%2C  somatic embryogenesis receptor kinase 1%2C BRI1-Associated receptor Kinase 1;Oryzabase Gene Symbol Synonym(s)=OsSERK1%2C OsBAK1%2C OsSERK1/OsBAK1%2C OsBISERK1%2C OsSerk1%2C OsBAK1-1%2C 08SG2/OsBAK1%2C 08SG2%2C SG2;Oryzabase Gene Name Synonym(s)=somatic embryogenesis receptor-like kinase 1%2C somatic embryogenesis receptor kinase 1%2C BRI1-associated receptor kinase 1%2C BTH-induced SERK1%2C benzothiadiazole-induced SERK1%2C bri1-associated receptor kinase 1 (BAK1) homologue 1%2C small grain 2;Note=A member of the somatic embryogenesis receptor kinases (SERKs) family%2C Brassinosteroid (BR) signaling%2C Regulation of plant architecture;Transcript_evidence=AK103038,AB188247;ORF_evidence=Q6Z4U4;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=Leucine-rich repeat domain superfamily (IPR032675),Protein kinase-like domain superfamily (IPR011009),Leucine-rich repeat-containing N-terminal%2C plant-type (IPR013210),Protein kinase domain (IPR000719),Leucine-rich repeat (IPR001611),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J033117E16;Manual Curation=October 30%2C 2017;Literature_PMID=29073469,27424498,25266270,22058019,16081169;Oryzabase=11529;Expression=AK103038;TENOR=Os08t0174700-01;KEGG=Os08t0174700-01 (EC:2.7.11.1);Subcellular location=plasma membrane (GO:0005886)
Chr08	irgsp1_rep	five_prime_UTR	4344171	4344454	.	+	.	Parent=Os08t0174700-01
Chr08	irgsp1_rep	CDS	4344455	4344539	.	+	0	Parent=Os08t0174700-01
Chr08	irgsp1_rep	CDS	4346254	4346386	.	+	2	Parent=Os08t0174700-01
Chr08	irgsp1_rep	CDS	4346460	4346531	.	+	1	Parent=Os08t0174700-01
Chr08	irgsp1_rep	CDS	4346868	4347011	.	+	1	Parent=Os08t0174700-01
Chr08	irgsp1_rep	CDS	4347732	4347803	.	+	1	Parent=Os08t0174700-01
Chr08	irgsp1_rep	CDS	4347930	4348001	.	+	1	Parent=Os08t0174700-01
Chr08	irgsp1_rep	CDS	4348085	4348197	.	+	1	Parent=Os08t0174700-01
Chr08	irgsp1_rep	CDS	4348339	4348470	.	+	2	Parent=Os08t0174700-01
Chr08	irgsp1_rep	CDS	4348548	4348889	.	+	2	Parent=Os08t0174700-01
Chr08	irgsp1_rep	CDS	4348972	4349366	.	+	2	Parent=Os08t0174700-01
Chr08	irgsp1_rep	CDS	4349637	4349951	.	+	0	Parent=Os08t0174700-01
Chr08	irgsp1_rep	three_prime_UTR	4349952	4350465	.	+	.	Parent=Os08t0174700-01
Chr08	irgsp1_rep	mRNA	4347931	4348201	.	-	.	ID=Os08t0174725-00;Name=Os08t0174725-00;Locus_id=Os08g0174725;Note=Non-protein coding transcript.;Transcript_evidence=AM939987 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0174725-00
Chr08	irgsp1_rep	exon	4348095	4348201	.	-	.	Parent=Os08t0174725-00
Chr08	irgsp1_rep	exon	4347931	4348007	.	-	.	Parent=Os08t0174725-00
Chr08	irgsp1_rep	mRNA	4351785	4352132	.	+	.	ID=Os08t0174750-00;Name=Os08t0174750-00;Locus_id=Os08g0174750;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A2YRQ9 (UniProt);TENOR=Os08t0174750-00;KEGG=Os08t0174750-00
Chr08	irgsp1_rep	CDS	4351785	4352132	.	+	0	Parent=Os08t0174750-00
Chr08	irgsp1_rep	mRNA	4352815	4361365	.	+	.	ID=Os08t0174800-01;Name=Os08t0174800-01;Locus_id=Os08g0174800;Note=Similar to Benzothiadiazole-induced somatic embryogenesis receptor kinase 1.;Transcript_evidence=AK071471 (DDBJ%2C Best hit);ORF_evidence=Q6S7F1 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J023095L06;TENOR=Os08t0174800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	4352815	4353621	.	+	.	Parent=Os08t0174800-01
Chr08	irgsp1_rep	CDS	4353622	4353710	.	+	0	Parent=Os08t0174800-01
Chr08	irgsp1_rep	CDS	4357477	4359436	.	+	1	Parent=Os08t0174800-01
Chr08	irgsp1_rep	CDS	4359809	4360140	.	+	0	Parent=Os08t0174800-01
Chr08	irgsp1_rep	CDS	4360276	4360291	.	+	1	Parent=Os08t0174800-01
Chr08	irgsp1_rep	three_prime_UTR	4360292	4360670	.	+	.	Parent=Os08t0174800-01
Chr08	irgsp1_rep	three_prime_UTR	4360941	4361365	.	+	.	Parent=Os08t0174800-01
Chr08	irgsp1_rep	mRNA	4358969	4361392	.	+	.	ID=Os08t0174800-02;Name=Os08t0174800-02;Locus_id=Os08g0174800;Note=Similar to Benzothiadiazole-induced somatic embryogenesis receptor kinase 1.;Transcript_evidence=AK060589 (DDBJ%2C Best hit);ORF_evidence=Q6S7F1 (UniProt);GO=Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009);NIAS_FLcDNA=001-024-C11;Expression=AK060589;TENOR=Os08t0174800-02;KEGG=Os08t0174800-02
Chr08	irgsp1_rep	five_prime_UTR	4358969	4358971	.	+	.	Parent=Os08t0174800-02
Chr08	irgsp1_rep	CDS	4358972	4359436	.	+	0	Parent=Os08t0174800-02
Chr08	irgsp1_rep	CDS	4359809	4360222	.	+	0	Parent=Os08t0174800-02
Chr08	irgsp1_rep	three_prime_UTR	4360223	4360670	.	+	.	Parent=Os08t0174800-02
Chr08	irgsp1_rep	three_prime_UTR	4360941	4361392	.	+	.	Parent=Os08t0174800-02
Chr08	irgsp1_rep	mRNA	4363359	4365519	.	+	.	ID=Os08t0174900-01;Name=Os08t0174900-01;Locus_id=Os08g0174900;Note=Similar to CRS2-associated factor 2.;Transcript_evidence=AK288674 (DDBJ%2C Best hit);ORF_evidence=E6NU21 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=RNA-binding%2C CRM domain (IPR001890);NIAS_FLcDNA=J090059D22;Oryzabase=23507;TENOR=Os08t0174900-01;KEGG=Os08t0174900-01
Chr08	irgsp1_rep	five_prime_UTR	4363359	4363398	.	+	.	Parent=Os08t0174900-01
Chr08	irgsp1_rep	CDS	4363399	4363939	.	+	0	Parent=Os08t0174900-01
Chr08	irgsp1_rep	CDS	4364043	4364170	.	+	2	Parent=Os08t0174900-01
Chr08	irgsp1_rep	CDS	4364332	4364557	.	+	0	Parent=Os08t0174900-01
Chr08	irgsp1_rep	CDS	4364634	4364761	.	+	2	Parent=Os08t0174900-01
Chr08	irgsp1_rep	CDS	4364849	4365112	.	+	0	Parent=Os08t0174900-01
Chr08	irgsp1_rep	three_prime_UTR	4365113	4365519	.	+	.	Parent=Os08t0174900-01
Chr08	irgsp1_rep	mRNA	4371022	4372930	.	+	.	ID=Os08t0175000-00;Name=Os08t0175000-00;Locus_id=Os08g0175000;Oryzabase Gene Symbol Synonym(s)=OsSTRL13%2C STRL13;Oryzabase Gene Name Synonym(s)=STR-like 13;Note=Similar to strictosidine synthase 1.;Transcript_evidence=EU968924 (DDBJ);ORF_evidence=NP_001150945.1 (RefSeq);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: strictosidine synthase activity (GO:0016844);InterPro=Six-bladed beta-propeller%2C TolB-like (IPR011042),Strictosidine synthase%2C conserved region (IPR018119);Oryzabase=21796;TENOR=Os08t0175000-00;KEGG=Os08t0175000-00
Chr08	irgsp1_rep	CDS	4371022	4371320	.	+	0	Parent=Os08t0175000-00
Chr08	irgsp1_rep	CDS	4371664	4371939	.	+	1	Parent=Os08t0175000-00
Chr08	irgsp1_rep	CDS	4372435	4372930	.	+	1	Parent=Os08t0175000-00
Chr08	irgsp1_rep	mRNA	4385770	4388881	.	-	.	ID=Os08t0175200-01;Name=Os08t0175200-01;Locus_id=Os08g0175200;Note=Protein of unknown function DUF292%2C eukaryotic domain containing protein.;Transcript_evidence=AK072367 (DDBJ%2C Best hit);ORF_evidence=A2YRR3 (UniProt);InterPro=Domain of unknown function DUF292%2C eukaryotic (IPR005061);NIAS_FLcDNA=J023075K04;Expression=AK072367;TENOR=Os08t0175200-01;KEGG=Os08t0175200-01
Chr08	irgsp1_rep	five_prime_UTR	4388775	4388881	.	-	.	Parent=Os08t0175200-01
Chr08	irgsp1_rep	CDS	4388713	4388774	.	-	0	Parent=Os08t0175200-01
Chr08	irgsp1_rep	CDS	4388471	4388603	.	-	1	Parent=Os08t0175200-01
Chr08	irgsp1_rep	CDS	4388288	4388391	.	-	0	Parent=Os08t0175200-01
Chr08	irgsp1_rep	CDS	4387443	4387614	.	-	1	Parent=Os08t0175200-01
Chr08	irgsp1_rep	CDS	4387212	4387352	.	-	0	Parent=Os08t0175200-01
Chr08	irgsp1_rep	CDS	4386066	4387139	.	-	0	Parent=Os08t0175200-01
Chr08	irgsp1_rep	three_prime_UTR	4385770	4386065	.	-	.	Parent=Os08t0175200-01
Chr08	irgsp1_rep	mRNA	4385769	4387303	.	-	.	ID=Os08t0175200-02;Name=Os08t0175200-02;Locus_id=Os08g0175200;Note=Hypothetical conserved gene.;Transcript_evidence=AK119224 (DDBJ%2C Best hit);ORF_evidence=A2YRR3 (UniProt);NIAS_FLcDNA=001-100-G08;Expression=AK119224;TENOR=Os08t0175200-02;KEGG=Os08t0175200-02
Chr08	irgsp1_rep	five_prime_UTR	4387302	4387303	.	-	.	Parent=Os08t0175200-02
Chr08	irgsp1_rep	CDS	4387212	4387301	.	-	0	Parent=Os08t0175200-02
Chr08	irgsp1_rep	CDS	4386066	4387139	.	-	0	Parent=Os08t0175200-02
Chr08	irgsp1_rep	three_prime_UTR	4385769	4386065	.	-	.	Parent=Os08t0175200-02
Chr08	irgsp1_rep	mRNA	4391050	4400757	.	-	.	ID=Os08t0175300-01;Name=Os08t0175300-01;Locus_id=Os08g0175300;Oryzabase Gene Symbol Synonym(s)=PolI-like%2C OsPoLP1%2C PoLP1%2C OsRpoLp%2C RpoLp;Oryzabase Gene Name Synonym(s)=PolI-like DNA polymerase%2C plastidal DNA polymerase 1;Note=PolI-like DNA polymerase.;Transcript_evidence=AK103236 (DDBJ%2C Best hit);ORF_evidence=Q8S9E2 (UniProt);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Biological Process: DNA replication (GO:0006260),Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed DNA polymerase activity (GO:0003887),Molecular Function: 3'-5' exonuclease activity (GO:0008408);InterPro=DNA-directed DNA polymerase%2C family A%2C palm domain (IPR001098),DNA polymerase A (IPR002298),3&apos%3B-5&apos%3B exonuclease (IPR002562),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J033123F03;Oryzabase=19597;Expression=AK103236;TENOR=Os08t0175300-01;KEGG=Os08t0175300-01
Chr08	irgsp1_rep	five_prime_UTR	4400526	4400757	.	-	.	Parent=Os08t0175300-01
Chr08	irgsp1_rep	CDS	4400380	4400525	.	-	0	Parent=Os08t0175300-01
Chr08	irgsp1_rep	CDS	4399034	4399751	.	-	1	Parent=Os08t0175300-01
Chr08	irgsp1_rep	CDS	4398418	4398615	.	-	0	Parent=Os08t0175300-01
Chr08	irgsp1_rep	CDS	4395768	4396435	.	-	0	Parent=Os08t0175300-01
Chr08	irgsp1_rep	CDS	4394900	4395329	.	-	1	Parent=Os08t0175300-01
Chr08	irgsp1_rep	CDS	4394268	4394363	.	-	0	Parent=Os08t0175300-01
Chr08	irgsp1_rep	CDS	4393362	4393454	.	-	0	Parent=Os08t0175300-01
Chr08	irgsp1_rep	CDS	4393087	4393281	.	-	0	Parent=Os08t0175300-01
Chr08	irgsp1_rep	CDS	4392434	4392526	.	-	0	Parent=Os08t0175300-01
Chr08	irgsp1_rep	CDS	4392047	4392259	.	-	0	Parent=Os08t0175300-01
Chr08	irgsp1_rep	CDS	4391880	4391969	.	-	0	Parent=Os08t0175300-01
Chr08	irgsp1_rep	CDS	4391492	4391653	.	-	0	Parent=Os08t0175300-01
Chr08	irgsp1_rep	three_prime_UTR	4391050	4391491	.	-	.	Parent=Os08t0175300-01
Chr08	irgsp1_rep	mRNA	4391055	4396274	.	-	.	ID=Os08t0175300-02;Name=Os08t0175300-02;Locus_id=Os08g0175300;Oryzabase Gene Symbol Synonym(s)=PolI-like%2C OsPoLP1%2C PoLP1%2C OsRpoLp%2C RpoLp;Oryzabase Gene Name Synonym(s)=PolI-like DNA polymerase%2C plastidal DNA polymerase 1;Note=Similar to PolI-like DNA polymerase.;Transcript_evidence=AK064462 (DDBJ%2C Best hit);ORF_evidence=Q8S9E2 (UniProt);GO=Biological Process: DNA replication (GO:0006260),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed DNA polymerase activity (GO:0003887);InterPro=DNA-directed DNA polymerase%2C family A%2C palm domain (IPR001098),DNA polymerase A (IPR002298);NIAS_FLcDNA=002-110-G06;Oryzabase=19597;Expression=AK064462;TENOR=Os08t0175300-02;KEGG=Os08t0175300-02
Chr08	irgsp1_rep	five_prime_UTR	4396274	4396274	.	-	.	Parent=Os08t0175300-02
Chr08	irgsp1_rep	CDS	4395768	4396273	.	-	0	Parent=Os08t0175300-02
Chr08	irgsp1_rep	CDS	4394900	4395329	.	-	1	Parent=Os08t0175300-02
Chr08	irgsp1_rep	CDS	4394268	4394363	.	-	0	Parent=Os08t0175300-02
Chr08	irgsp1_rep	CDS	4393362	4393454	.	-	0	Parent=Os08t0175300-02
Chr08	irgsp1_rep	CDS	4393087	4393281	.	-	0	Parent=Os08t0175300-02
Chr08	irgsp1_rep	CDS	4392434	4392526	.	-	0	Parent=Os08t0175300-02
Chr08	irgsp1_rep	CDS	4392047	4392259	.	-	0	Parent=Os08t0175300-02
Chr08	irgsp1_rep	CDS	4391897	4391969	.	-	0	Parent=Os08t0175300-02
Chr08	irgsp1_rep	CDS	4391140	4391141	.	-	2	Parent=Os08t0175300-02
Chr08	irgsp1_rep	three_prime_UTR	4391055	4391139	.	-	.	Parent=Os08t0175300-02
Chr08	irgsp1_rep	mRNA	4400972	4401019	.	+	.	ID=Os08t0175450-00;Name=Os08t0175450-00;Locus_id=Os08g0175450;Note=Non-protein coding transcript.;Transcript_evidence=X02683 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0175450-00
Chr08	irgsp1_rep	exon	4400972	4401019	.	+	.	Parent=Os08t0175450-00
Chr08	irgsp1_rep	mRNA	4411430	4417245	.	-	.	ID=Os08t0175600-01;Name=Os08t0175600-01;Locus_id=Os08g0175600;Note=Similar to PolI-like DNA polymerase.;Transcript_evidence=AK110978 (DDBJ%2C Best hit);ORF_evidence=Q8S9E2 (UniProt);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: 3'-5' exonuclease activity (GO:0008408);InterPro=3&apos%3B-5&apos%3B exonuclease (IPR002562),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=002-174-C06;Expression=AK110978;TENOR=Os08t0175600-01;KEGG=Os08t0175600-01
Chr08	irgsp1_rep	five_prime_UTR	4416925	4417245	.	-	.	Parent=Os08t0175600-01
Chr08	irgsp1_rep	CDS	4416791	4416924	.	-	0	Parent=Os08t0175600-01
Chr08	irgsp1_rep	CDS	4415609	4416326	.	-	1	Parent=Os08t0175600-01
Chr08	irgsp1_rep	CDS	4414994	4415191	.	-	0	Parent=Os08t0175600-01
Chr08	irgsp1_rep	CDS	4411430	4412089	.	-	0	Parent=Os08t0175600-01
Chr08	irgsp1_rep	mRNA	4413202	4414401	.	-	.	ID=Os08t0175700-01;Name=Os08t0175700-01;Locus_id=Os08g0175700;Note=Hypothetical protein.;Transcript_evidence=AK106589 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-111-G02;Expression=AK106589;TENOR=Os08t0175700-01;KEGG=Os08t0175700-01
Chr08	irgsp1_rep	five_prime_UTR	4414060	4414401	.	-	.	Parent=Os08t0175700-01
Chr08	irgsp1_rep	CDS	4413793	4414059	.	-	0	Parent=Os08t0175700-01
Chr08	irgsp1_rep	three_prime_UTR	4413202	4413792	.	-	.	Parent=Os08t0175700-01
Chr08	irgsp1_rep	mRNA	4419215	4419262	.	+	.	ID=Os08t0175800-00;Name=Os08t0175800-00;Locus_id=Os08g0175800;Note=Non-protein coding transcript.;Transcript_evidence=X02683 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0175800-00
Chr08	irgsp1_rep	exon	4419215	4419262	.	+	.	Parent=Os08t0175800-00
Chr08	irgsp1_rep	mRNA	4430918	4434203	.	+	.	ID=Os08t0176100-01;Name=Os08t0176100-01;Locus_id=Os08g0176100;Note=DNA/pantothenate metabolism flavoprotein%2C C-terminal domain containing protein.;Transcript_evidence=AK067868 (DDBJ%2C Best hit);ORF_evidence=B6TGB5 (UniProt);InterPro=DNA/pantothenate metabolism flavoprotein%2C C-terminal (IPR007085);NIAS_FLcDNA=J013126N15;Expression=AK067868;TENOR=Os08t0176100-01;KEGG=Os08t0176100-01
Chr08	irgsp1_rep	five_prime_UTR	4430918	4430950	.	+	.	Parent=Os08t0176100-01
Chr08	irgsp1_rep	CDS	4430951	4431075	.	+	0	Parent=Os08t0176100-01
Chr08	irgsp1_rep	CDS	4431188	4431316	.	+	1	Parent=Os08t0176100-01
Chr08	irgsp1_rep	CDS	4431411	4431455	.	+	1	Parent=Os08t0176100-01
Chr08	irgsp1_rep	CDS	4431719	4431804	.	+	1	Parent=Os08t0176100-01
Chr08	irgsp1_rep	CDS	4431969	4432021	.	+	2	Parent=Os08t0176100-01
Chr08	irgsp1_rep	CDS	4432135	4432194	.	+	0	Parent=Os08t0176100-01
Chr08	irgsp1_rep	CDS	4432853	4432954	.	+	0	Parent=Os08t0176100-01
Chr08	irgsp1_rep	CDS	4433375	4433494	.	+	0	Parent=Os08t0176100-01
Chr08	irgsp1_rep	CDS	4433676	4433927	.	+	0	Parent=Os08t0176100-01
Chr08	irgsp1_rep	three_prime_UTR	4433928	4434203	.	+	.	Parent=Os08t0176100-01
Chr08	irgsp1_rep	mRNA	4445655	4447532	.	+	.	ID=Os08t0176200-01;Name=Os08t0176200-01;Locus_id=Os08g0176200;Oryzabase Gene Symbol Synonym(s)=ORK1%2C OsRLCK246%2C RLCK246;Oryzabase Gene Name Synonym(s)=Oryza sativa Receptor-like Kinase1%2C Receptor-like Kinase 1%2C Receptor-like Cytoplasmic Kinase 246;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK241001 (DDBJ%2C Best hit);ORF_evidence=Q5KS46 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J065053D05;Oryzabase=13200;TENOR=Os08t0176200-01;KEGG=Os08t0176200-01
Chr08	irgsp1_rep	CDS	4445655	4445814	.	+	0	Parent=Os08t0176200-01
Chr08	irgsp1_rep	CDS	4445898	4446224	.	+	2	Parent=Os08t0176200-01
Chr08	irgsp1_rep	CDS	4446307	4446701	.	+	2	Parent=Os08t0176200-01
Chr08	irgsp1_rep	CDS	4446895	4447209	.	+	0	Parent=Os08t0176200-01
Chr08	irgsp1_rep	three_prime_UTR	4447210	4447532	.	+	.	Parent=Os08t0176200-01
Chr08	irgsp1_rep	mRNA	4468741	4472698	.	+	.	ID=Os08t0176633-01;Name=Os08t0176633-01;Locus_id=Os08g0176633;Note=Conserved hypothetical protein.;Transcript_evidence=AK288994 (DDBJ%2C Best hit);ORF_evidence=Q6ZBT2 (UniProt);NIAS_FLcDNA=J090087P03;TENOR=Os08t0176633-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	4468741	4468851	.	+	.	Parent=Os08t0176633-01
Chr08	irgsp1_rep	CDS	4468852	4470036	.	+	0	Parent=Os08t0176633-01
Chr08	irgsp1_rep	three_prime_UTR	4470037	4472698	.	+	.	Parent=Os08t0176633-01
Chr08	irgsp1_rep	mRNA	4496687	4502242	.	-	.	ID=Os08t0176800-01;Name=Os08t0176800-01;Locus_id=Os08g0176800;Oryzabase Gene Symbol Synonym(s)=OsWD40-156;Note=Similar to mRNA-associated protein mrnp 41 (Rae1 protein homolog).;Transcript_evidence=AK111670 (DDBJ%2C Best hit);ORF_evidence=NP_001150048.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J013156C15;Oryzabase=10837;Expression=AK111670;TENOR=Os08t0176800-01;KEGG=Os08t0176800-01
Chr08	irgsp1_rep	five_prime_UTR	4502052	4502242	.	-	.	Parent=Os08t0176800-01
Chr08	irgsp1_rep	five_prime_UTR	4501721	4501736	.	-	.	Parent=Os08t0176800-01
Chr08	irgsp1_rep	CDS	4501670	4501720	.	-	0	Parent=Os08t0176800-01
Chr08	irgsp1_rep	CDS	4501452	4501538	.	-	0	Parent=Os08t0176800-01
Chr08	irgsp1_rep	CDS	4501306	4501371	.	-	0	Parent=Os08t0176800-01
Chr08	irgsp1_rep	CDS	4501016	4501209	.	-	0	Parent=Os08t0176800-01
Chr08	irgsp1_rep	CDS	4500408	4500549	.	-	1	Parent=Os08t0176800-01
Chr08	irgsp1_rep	CDS	4500206	4500286	.	-	0	Parent=Os08t0176800-01
Chr08	irgsp1_rep	CDS	4499660	4499788	.	-	0	Parent=Os08t0176800-01
Chr08	irgsp1_rep	CDS	4498640	4498717	.	-	0	Parent=Os08t0176800-01
Chr08	irgsp1_rep	CDS	4498096	4498167	.	-	0	Parent=Os08t0176800-01
Chr08	irgsp1_rep	CDS	4497336	4497416	.	-	0	Parent=Os08t0176800-01
Chr08	irgsp1_rep	CDS	4497199	4497246	.	-	0	Parent=Os08t0176800-01
Chr08	irgsp1_rep	three_prime_UTR	4496687	4497198	.	-	.	Parent=Os08t0176800-01
Chr08	irgsp1_rep	mRNA	4505745	4508226	.	-	.	ID=Os08t0176900-01;Name=Os08t0176900-01;Locus_id=Os08g0176900;CGSNL Gene Symbol=BZIP64;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 64;Oryzabase Gene Symbol Synonym(s)=OsbZIP64;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 64;Note=Similar to Transcription factor HBP-1b(C38) (Fragment).;Transcript_evidence=AK107028 (DDBJ%2C Best hit);ORF_evidence=B8BB80 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);NIAS_FLcDNA=002-121-A09;Oryzabase=10145;Expression=AK107028;TENOR=Os08t0176900-01;KEGG=Os08t0176900-01
Chr08	irgsp1_rep	five_prime_UTR	4507993	4508226	.	-	.	Parent=Os08t0176900-01
Chr08	irgsp1_rep	CDS	4507780	4507992	.	-	0	Parent=Os08t0176900-01
Chr08	irgsp1_rep	CDS	4507563	4507676	.	-	0	Parent=Os08t0176900-01
Chr08	irgsp1_rep	CDS	4507376	4507435	.	-	0	Parent=Os08t0176900-01
Chr08	irgsp1_rep	CDS	4507199	4507276	.	-	0	Parent=Os08t0176900-01
Chr08	irgsp1_rep	CDS	4507043	4507100	.	-	0	Parent=Os08t0176900-01
Chr08	irgsp1_rep	CDS	4506315	4506961	.	-	2	Parent=Os08t0176900-01
Chr08	irgsp1_rep	three_prime_UTR	4505745	4506314	.	-	.	Parent=Os08t0176900-01
Chr08	irgsp1_rep	mRNA	4507191	4508052	.	-	.	ID=Os08t0176900-02;Name=Os08t0176900-02;Locus_id=Os08g0176900;CGSNL Gene Symbol=BZIP64;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 64;Oryzabase Gene Symbol Synonym(s)=OsbZIP64;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 64;Note=Hypothetical conserved gene.;Transcript_evidence=AK109294 (DDBJ%2C Best hit);ORF_evidence=B4FNH6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);NIAS_FLcDNA=002-188-D03;Oryzabase=10145;TENOR=Os08t0176900-02
Chr08	irgsp1_rep	five_prime_UTR	4507993	4508052	.	-	.	Parent=Os08t0176900-02
Chr08	irgsp1_rep	CDS	4507780	4507992	.	-	0	Parent=Os08t0176900-02
Chr08	irgsp1_rep	CDS	4507563	4507676	.	-	0	Parent=Os08t0176900-02
Chr08	irgsp1_rep	CDS	4507376	4507435	.	-	0	Parent=Os08t0176900-02
Chr08	irgsp1_rep	CDS	4507191	4507276	.	-	0	Parent=Os08t0176900-02
Chr08	irgsp1_rep	mRNA	4505997	4507323	.	+	.	ID=Os08t0177000-01;Name=Os08t0177000-01;Locus_id=Os08g0177000;Note=Hypothetical protein.;Transcript_evidence=AK107399 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-127-D08;Expression=AK107399;TENOR=Os08t0177000-01;KEGG=Os08t0177000-01
Chr08	irgsp1_rep	five_prime_UTR	4505997	4506374	.	+	.	Parent=Os08t0177000-01
Chr08	irgsp1_rep	CDS	4506375	4506965	.	+	0	Parent=Os08t0177000-01
Chr08	irgsp1_rep	three_prime_UTR	4506966	4507323	.	+	.	Parent=Os08t0177000-01
Chr08	irgsp1_rep	mRNA	4527849	4538717	.	-	.	ID=Os08t0177300-01;Name=Os08t0177300-01;Locus_id=Os08g0177300;Note=HSA domain containing protein.;Transcript_evidence=AK101719 (DDBJ%2C Best hit);ORF_evidence=B9FZC3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),HSA (IPR006562),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Helicase/SANT-associated%2C DNA binding (IPR014012),MYB-like (IPR017877);NIAS_FLcDNA=J033060P10;Expression=AK101719;TENOR=Os08t0177300-01;KEGG=Os08t0177300-01
Chr08	irgsp1_rep	five_prime_UTR	4538491	4538717	.	-	.	Parent=Os08t0177300-01
Chr08	irgsp1_rep	five_prime_UTR	4537663	4537799	.	-	.	Parent=Os08t0177300-01
Chr08	irgsp1_rep	CDS	4537574	4537662	.	-	0	Parent=Os08t0177300-01
Chr08	irgsp1_rep	CDS	4537445	4537499	.	-	1	Parent=Os08t0177300-01
Chr08	irgsp1_rep	CDS	4537259	4537356	.	-	0	Parent=Os08t0177300-01
Chr08	irgsp1_rep	CDS	4535732	4537172	.	-	1	Parent=Os08t0177300-01
Chr08	irgsp1_rep	CDS	4535545	4535664	.	-	0	Parent=Os08t0177300-01
Chr08	irgsp1_rep	CDS	4535147	4535407	.	-	0	Parent=Os08t0177300-01
Chr08	irgsp1_rep	CDS	4534761	4534934	.	-	0	Parent=Os08t0177300-01
Chr08	irgsp1_rep	CDS	4534562	4534642	.	-	0	Parent=Os08t0177300-01
Chr08	irgsp1_rep	CDS	4533924	4533984	.	-	0	Parent=Os08t0177300-01
Chr08	irgsp1_rep	CDS	4533246	4533817	.	-	2	Parent=Os08t0177300-01
Chr08	irgsp1_rep	CDS	4532282	4532339	.	-	0	Parent=Os08t0177300-01
Chr08	irgsp1_rep	CDS	4531978	4532171	.	-	2	Parent=Os08t0177300-01
Chr08	irgsp1_rep	CDS	4529519	4529572	.	-	0	Parent=Os08t0177300-01
Chr08	irgsp1_rep	CDS	4529359	4529439	.	-	0	Parent=Os08t0177300-01
Chr08	irgsp1_rep	CDS	4528911	4529048	.	-	0	Parent=Os08t0177300-01
Chr08	irgsp1_rep	CDS	4528570	4528686	.	-	0	Parent=Os08t0177300-01
Chr08	irgsp1_rep	CDS	4527882	4528067	.	-	0	Parent=Os08t0177300-01
Chr08	irgsp1_rep	three_prime_UTR	4527849	4527881	.	-	.	Parent=Os08t0177300-01
Chr08	irgsp1_rep	mRNA	4533328	4538688	.	-	.	ID=Os08t0177300-02;Name=Os08t0177300-02;Locus_id=Os08g0177300;Note=Hypothetical conserved gene.;Transcript_evidence=AK063414 (DDBJ%2C Best hit);ORF_evidence=B9FZC3 (UniProt);InterPro=HSA (IPR006562),HAS subgroup (IPR013999),Helicase/SANT-associated%2C DNA binding (IPR014012);NIAS_FLcDNA=001-115-B07;TENOR=Os08t0177300-02
Chr08	irgsp1_rep	five_prime_UTR	4538491	4538688	.	-	.	Parent=Os08t0177300-02
Chr08	irgsp1_rep	five_prime_UTR	4537663	4537799	.	-	.	Parent=Os08t0177300-02
Chr08	irgsp1_rep	CDS	4537574	4537662	.	-	0	Parent=Os08t0177300-02
Chr08	irgsp1_rep	CDS	4537445	4537499	.	-	1	Parent=Os08t0177300-02
Chr08	irgsp1_rep	CDS	4537259	4537356	.	-	0	Parent=Os08t0177300-02
Chr08	irgsp1_rep	CDS	4535732	4537172	.	-	1	Parent=Os08t0177300-02
Chr08	irgsp1_rep	CDS	4535545	4535664	.	-	0	Parent=Os08t0177300-02
Chr08	irgsp1_rep	CDS	4535147	4535407	.	-	0	Parent=Os08t0177300-02
Chr08	irgsp1_rep	CDS	4534761	4534934	.	-	0	Parent=Os08t0177300-02
Chr08	irgsp1_rep	CDS	4534562	4534642	.	-	0	Parent=Os08t0177300-02
Chr08	irgsp1_rep	CDS	4533924	4533984	.	-	0	Parent=Os08t0177300-02
Chr08	irgsp1_rep	CDS	4533328	4533817	.	-	2	Parent=Os08t0177300-02
Chr08	irgsp1_rep	mRNA	4523794	4528016	.	-	.	ID=Os08t0177300-03;Name=Os08t0177300-03;Locus_id=Os08g0177300;Note=Similar to DNA binding protein (Fragment).;Transcript_evidence=AK105561 (DDBJ%2C Best hit);ORF_evidence=A6MZW8 (UniProt);NIAS_FLcDNA=001-128-B09;Expression=AK105561;TENOR=Os08t0177300-03;KEGG=Os08t0177300-03
Chr08	irgsp1_rep	five_prime_UTR	4527978	4528016	.	-	.	Parent=Os08t0177300-03
Chr08	irgsp1_rep	CDS	4527976	4527977	.	-	0	Parent=Os08t0177300-03
Chr08	irgsp1_rep	CDS	4527657	4527869	.	-	1	Parent=Os08t0177300-03
Chr08	irgsp1_rep	CDS	4527184	4527574	.	-	1	Parent=Os08t0177300-03
Chr08	irgsp1_rep	CDS	4524600	4525967	.	-	0	Parent=Os08t0177300-03
Chr08	irgsp1_rep	three_prime_UTR	4524537	4524599	.	-	.	Parent=Os08t0177300-03
Chr08	irgsp1_rep	three_prime_UTR	4523794	4524106	.	-	.	Parent=Os08t0177300-03
Chr08	irgsp1_rep	mRNA	4546935	4549380	.	+	.	ID=Os08t0177500-00;Name=Os08t0177500-00;Locus_id=Os08g0177500;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FZC4 (UniProt);TENOR=Os08t0177500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	4546935	4547138	.	+	0	Parent=Os08t0177500-00
Chr08	irgsp1_rep	CDS	4548301	4549380	.	+	0	Parent=Os08t0177500-00
Chr08	irgsp1_rep	mRNA	4550913	4557184	.	+	.	ID=Os08t0177550-01;Name=Os08t0177550-01;Locus_id=Os08g0177550;Note=Conserved hypothetical protein.;Transcript_evidence=AK241489 (DDBJ%2C Best hit);ORF_evidence=NP_001175411.1 (RefSeq);NIAS_FLcDNA=J065166N17;TENOR=Os08t0177550-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	4550913	4551034	.	+	.	Parent=Os08t0177550-01
Chr08	irgsp1_rep	CDS	4551035	4551220	.	+	0	Parent=Os08t0177550-01
Chr08	irgsp1_rep	CDS	4556815	4556925	.	+	0	Parent=Os08t0177550-01
Chr08	irgsp1_rep	three_prime_UTR	4556926	4557184	.	+	.	Parent=Os08t0177550-01
Chr08	irgsp1_rep	mRNA	4552111	4556216	.	-	.	ID=Os08t0177600-00;Name=Os08t0177600-00;Locus_id=Os08g0177600;Oryzabase Gene Symbol Synonym(s)=MRE11%2C OsMRE11;Oryzabase Gene Name Synonym(s)=double-strand break repair protein MRE11%2C OsMRE11-like protein;Note=Similar to double-strand break repair protein MRE11.;Transcript_evidence=AM049174 (DDBJ);ORF_evidence=NP_001151499.1 (RefSeq);GO=Biological Process: DNA metabolic process (GO:0006259),Biological Process: double-strand break repair (GO:0006302),Cellular Component: nucleus (GO:0005634),Molecular Function: endonuclease activity (GO:0004519),Molecular Function: exonuclease activity (GO:0004527),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: manganese ion binding (GO:0030145);InterPro=DNA repair exonuclease (IPR003701),Metallophosphoesterase domain (IPR004843),Mre11%2C DNA-binding (IPR007281);Oryzabase=23426;TENOR=Os08t0177600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	4556040	4556216	.	-	0	Parent=Os08t0177600-00
Chr08	irgsp1_rep	CDS	4555364	4555521	.	-	0	Parent=Os08t0177600-00
Chr08	irgsp1_rep	CDS	4555093	4555183	.	-	1	Parent=Os08t0177600-00
Chr08	irgsp1_rep	CDS	4554832	4554951	.	-	0	Parent=Os08t0177600-00
Chr08	irgsp1_rep	CDS	4554679	4554747	.	-	0	Parent=Os08t0177600-00
Chr08	irgsp1_rep	CDS	4554475	4554551	.	-	0	Parent=Os08t0177600-00
Chr08	irgsp1_rep	CDS	4554281	4554383	.	-	1	Parent=Os08t0177600-00
Chr08	irgsp1_rep	CDS	4554090	4554197	.	-	0	Parent=Os08t0177600-00
Chr08	irgsp1_rep	CDS	4553946	4554008	.	-	0	Parent=Os08t0177600-00
Chr08	irgsp1_rep	CDS	4553798	4553869	.	-	0	Parent=Os08t0177600-00
Chr08	irgsp1_rep	CDS	4553148	4553216	.	-	0	Parent=Os08t0177600-00
Chr08	irgsp1_rep	CDS	4553008	4553070	.	-	0	Parent=Os08t0177600-00
Chr08	irgsp1_rep	CDS	4552840	4552900	.	-	0	Parent=Os08t0177600-00
Chr08	irgsp1_rep	CDS	4552601	4552683	.	-	2	Parent=Os08t0177600-00
Chr08	irgsp1_rep	CDS	4552111	4552431	.	-	0	Parent=Os08t0177600-00
Chr08	irgsp1_rep	mRNA	4562440	4565329	.	+	.	ID=Os08t0177700-01;Name=Os08t0177700-01;Locus_id=Os08g0177700;Oryzabase Gene Name Synonym(s)=Sm gene%2C Sm family protein;Note=Similar to LSM7-like.;Transcript_evidence=AK121665 (DDBJ%2C Best hit);ORF_evidence=NP_001148733.1 (RefSeq);InterPro=Like-Sm ribonucleoprotein (LSM) domain (IPR001163),Like-Sm ribonucleoprotein (LSM) domain%2C eukaryotic/archaea-type (IPR006649),Like-Sm ribonucleoprotein (LSM)-related domain (IPR010920),U6 snRNA-associated Sm-like protein LSm7 (IPR017132);NIAS_FLcDNA=J033066H03;Oryzabase=15656;TENOR=Os08t0177700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	4562440	4562514	.	+	.	Parent=Os08t0177700-01
Chr08	irgsp1_rep	five_prime_UTR	4562617	4562622	.	+	.	Parent=Os08t0177700-01
Chr08	irgsp1_rep	CDS	4562623	4562655	.	+	0	Parent=Os08t0177700-01
Chr08	irgsp1_rep	CDS	4562778	4562859	.	+	0	Parent=Os08t0177700-01
Chr08	irgsp1_rep	CDS	4564168	4564239	.	+	2	Parent=Os08t0177700-01
Chr08	irgsp1_rep	CDS	4564603	4564655	.	+	2	Parent=Os08t0177700-01
Chr08	irgsp1_rep	CDS	4565065	4565151	.	+	0	Parent=Os08t0177700-01
Chr08	irgsp1_rep	three_prime_UTR	4565152	4565329	.	+	.	Parent=Os08t0177700-01
Chr08	irgsp1_rep	mRNA	4566815	4569933	.	-	.	ID=Os08t0177800-00;Name=Os08t0177800-00;Locus_id=Os08g0177800;Note=Similar to RNase H domain-containing protein.;Transcript_evidence=EU974189 (DDBJ);ORF_evidence=XP_002890605.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: ribonuclease H activity (GO:0004523);InterPro=Ribonuclease H domain (IPR002156),Ribosomal protein L9/RNase H1%2C N-terminal (IPR009027),Ribonuclease H1%2C N-terminal (IPR011320),Ribonuclease H-like (IPR012337);TENOR=Os08t0177800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	4569595	4569933	.	-	0	Parent=Os08t0177800-00
Chr08	irgsp1_rep	CDS	4569021	4569179	.	-	0	Parent=Os08t0177800-00
Chr08	irgsp1_rep	CDS	4568430	4568477	.	-	0	Parent=Os08t0177800-00
Chr08	irgsp1_rep	CDS	4568250	4568312	.	-	0	Parent=Os08t0177800-00
Chr08	irgsp1_rep	CDS	4567999	4568091	.	-	0	Parent=Os08t0177800-00
Chr08	irgsp1_rep	CDS	4567757	4567900	.	-	0	Parent=Os08t0177800-00
Chr08	irgsp1_rep	CDS	4567208	4567315	.	-	0	Parent=Os08t0177800-00
Chr08	irgsp1_rep	CDS	4566815	4566916	.	-	0	Parent=Os08t0177800-00
Chr08	irgsp1_rep	mRNA	4566329	4566665	.	-	.	ID=Os08t0178000-01;Name=Os08t0178000-01;Locus_id=Os08g0178000;Note=Non-protein coding transcript.;Transcript_evidence=AK058430 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-015-E10;TENOR=Os08t0178000-01
Chr08	irgsp1_rep	exon	4566329	4566665	.	-	.	Parent=Os08t0178000-01
Chr08	irgsp1_rep	mRNA	4571022	4580739	.	+	.	ID=Os08t0178100-01;Name=Os08t0178100-01;Locus_id=Os08g0178100;Note=Pep3/Vps18/deep orange domain containing protein.;Transcript_evidence=AK101717 (DDBJ%2C Best hit);ORF_evidence=XP_002889937.1 (RefSeq);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Clathrin%2C heavy chain/VPS%2C 7-fold repeat (IPR000547),Zinc finger%2C RING-type (IPR001841),Pep3/Vps18/deep orange (IPR007810),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J033060O03;Expression=AK101717;TENOR=Os08t0178100-01;KEGG=Os08t0178100-01
Chr08	irgsp1_rep	five_prime_UTR	4571022	4571085	.	+	.	Parent=Os08t0178100-01
Chr08	irgsp1_rep	CDS	4571086	4571268	.	+	0	Parent=Os08t0178100-01
Chr08	irgsp1_rep	CDS	4571352	4571565	.	+	0	Parent=Os08t0178100-01
Chr08	irgsp1_rep	CDS	4571681	4571820	.	+	2	Parent=Os08t0178100-01
Chr08	irgsp1_rep	CDS	4571926	4572021	.	+	0	Parent=Os08t0178100-01
Chr08	irgsp1_rep	CDS	4572423	4572490	.	+	0	Parent=Os08t0178100-01
Chr08	irgsp1_rep	CDS	4572886	4572987	.	+	1	Parent=Os08t0178100-01
Chr08	irgsp1_rep	CDS	4573836	4573974	.	+	1	Parent=Os08t0178100-01
Chr08	irgsp1_rep	CDS	4574102	4574242	.	+	0	Parent=Os08t0178100-01
Chr08	irgsp1_rep	CDS	4574327	4574446	.	+	0	Parent=Os08t0178100-01
Chr08	irgsp1_rep	CDS	4574585	4574641	.	+	0	Parent=Os08t0178100-01
Chr08	irgsp1_rep	CDS	4574744	4574803	.	+	0	Parent=Os08t0178100-01
Chr08	irgsp1_rep	CDS	4575210	4575317	.	+	0	Parent=Os08t0178100-01
Chr08	irgsp1_rep	CDS	4576178	4576338	.	+	0	Parent=Os08t0178100-01
Chr08	irgsp1_rep	CDS	4576797	4576875	.	+	1	Parent=Os08t0178100-01
Chr08	irgsp1_rep	CDS	4577473	4577535	.	+	0	Parent=Os08t0178100-01
Chr08	irgsp1_rep	CDS	4577701	4577834	.	+	0	Parent=Os08t0178100-01
Chr08	irgsp1_rep	CDS	4578190	4578295	.	+	1	Parent=Os08t0178100-01
Chr08	irgsp1_rep	CDS	4578588	4578776	.	+	0	Parent=Os08t0178100-01
Chr08	irgsp1_rep	CDS	4578939	4579166	.	+	0	Parent=Os08t0178100-01
Chr08	irgsp1_rep	CDS	4579372	4579527	.	+	0	Parent=Os08t0178100-01
Chr08	irgsp1_rep	CDS	4579835	4579999	.	+	0	Parent=Os08t0178100-01
Chr08	irgsp1_rep	CDS	4580096	4580212	.	+	0	Parent=Os08t0178100-01
Chr08	irgsp1_rep	CDS	4580289	4580465	.	+	0	Parent=Os08t0178100-01
Chr08	irgsp1_rep	three_prime_UTR	4580466	4580739	.	+	.	Parent=Os08t0178100-01
Chr08	irgsp1_rep	mRNA	4581432	4583489	.	+	.	ID=Os08t0178200-02;Name=Os08t0178200-02;Locus_id=Os08g0178200;CGSNL Gene Symbol=MST5;CGSNL Gene Name=MONOSACCHARIDE TRANSPORTER 5;Oryzabase Gene Symbol Synonym(s)=OsMST5;Oryzabase Gene Name Synonym(s)=monosaccharide transporter 5;Note=Similar to Monosaccharide transporter 3.;Transcript_evidence=AK070877 (DDBJ%2C Best hit),AK072269 (DDBJ%2C Best hit);ORF_evidence=Q9FRT5 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J023065C06,J023008O22;Oryzabase=14692;Expression=AK070877;TENOR=Os08t0178200-02;KEGG=Os08t0178200-02
Chr08	irgsp1_rep	five_prime_UTR	4581432	4581503	.	+	.	Parent=Os08t0178200-02
Chr08	irgsp1_rep	CDS	4581504	4583063	.	+	0	Parent=Os08t0178200-02
Chr08	irgsp1_rep	three_prime_UTR	4583064	4583489	.	+	.	Parent=Os08t0178200-02
Chr08	irgsp1_rep	mRNA	4586478	4591215	.	+	.	ID=Os08t0178300-01;Name=Os08t0178300-01;Locus_id=Os08g0178300;Note=Protein of unknown function DUF2050%2C pre-mRNA-splicing factor domain containing protein.;Transcript_evidence=AK068383 (DDBJ%2C Best hit);ORF_evidence=B9FZC7 (UniProt);InterPro=Bud13 (IPR018609);NIAS_FLcDNA=J013147K06;Expression=AK068383;TENOR=Os08t0178300-01;KEGG=Os08t0178300-01
Chr08	irgsp1_rep	five_prime_UTR	4586478	4586716	.	+	.	Parent=Os08t0178300-01
Chr08	irgsp1_rep	five_prime_UTR	4586885	4586942	.	+	.	Parent=Os08t0178300-01
Chr08	irgsp1_rep	CDS	4586943	4587162	.	+	0	Parent=Os08t0178300-01
Chr08	irgsp1_rep	CDS	4587277	4588150	.	+	2	Parent=Os08t0178300-01
Chr08	irgsp1_rep	CDS	4588235	4588299	.	+	1	Parent=Os08t0178300-01
Chr08	irgsp1_rep	CDS	4588399	4588454	.	+	2	Parent=Os08t0178300-01
Chr08	irgsp1_rep	CDS	4589299	4589402	.	+	0	Parent=Os08t0178300-01
Chr08	irgsp1_rep	CDS	4589654	4589726	.	+	1	Parent=Os08t0178300-01
Chr08	irgsp1_rep	CDS	4589818	4589998	.	+	0	Parent=Os08t0178300-01
Chr08	irgsp1_rep	CDS	4590881	4590966	.	+	2	Parent=Os08t0178300-01
Chr08	irgsp1_rep	three_prime_UTR	4590967	4591215	.	+	.	Parent=Os08t0178300-01
Chr08	irgsp1_rep	mRNA	4586483	4591217	.	+	.	ID=Os08t0178300-02;Name=Os08t0178300-02;Locus_id=Os08g0178300;Note=Hypothetical conserved gene.;Transcript_evidence=AK100262 (DDBJ%2C Best hit);ORF_evidence=B9FZC7 (UniProt);InterPro=Bud13 (IPR018609);NIAS_FLcDNA=J023063G02;Expression=AK100262;TENOR=Os08t0178300-02;KEGG=Os08t0178300-02
Chr08	irgsp1_rep	five_prime_UTR	4586483	4586716	.	+	.	Parent=Os08t0178300-02
Chr08	irgsp1_rep	five_prime_UTR	4586895	4586942	.	+	.	Parent=Os08t0178300-02
Chr08	irgsp1_rep	CDS	4586943	4587162	.	+	0	Parent=Os08t0178300-02
Chr08	irgsp1_rep	CDS	4587277	4588150	.	+	2	Parent=Os08t0178300-02
Chr08	irgsp1_rep	CDS	4588235	4588299	.	+	1	Parent=Os08t0178300-02
Chr08	irgsp1_rep	CDS	4588399	4588454	.	+	2	Parent=Os08t0178300-02
Chr08	irgsp1_rep	CDS	4589299	4589380	.	+	0	Parent=Os08t0178300-02
Chr08	irgsp1_rep	CDS	4589654	4589682	.	+	2	Parent=Os08t0178300-02
Chr08	irgsp1_rep	three_prime_UTR	4589683	4589726	.	+	.	Parent=Os08t0178300-02
Chr08	irgsp1_rep	three_prime_UTR	4589818	4589998	.	+	.	Parent=Os08t0178300-02
Chr08	irgsp1_rep	three_prime_UTR	4590881	4591217	.	+	.	Parent=Os08t0178300-02
Chr08	irgsp1_rep	mRNA	4592000	4592583	.	-	.	ID=Os08t0178400-01;Name=Os08t0178400-01;Locus_id=Os08g0178400;Note=Non-protein coding transcript.;Transcript_evidence=AK062979 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-109-F01;TENOR=Os08t0178400-01
Chr08	irgsp1_rep	exon	4592000	4592583	.	-	.	Parent=Os08t0178400-01
Chr08	irgsp1_rep	mRNA	4593671	4594173	.	+	.	ID=Os08t0178500-01;Name=Os08t0178500-01;Locus_id=Os08g0178500;Note=Similar to H0315F07.12 protein.;Transcript_evidence=AK107865 (DDBJ%2C Best hit);ORF_evidence=Q259Z0 (UniProt);InterPro=Protein of unknown function wound-induced (IPR022251);NIAS_FLcDNA=002-134-C01;Expression=AK107865;TENOR=Os08t0178500-01;KEGG=Os08t0178500-01
Chr08	irgsp1_rep	five_prime_UTR	4593671	4593782	.	+	.	Parent=Os08t0178500-01
Chr08	irgsp1_rep	CDS	4593783	4594055	.	+	0	Parent=Os08t0178500-01
Chr08	irgsp1_rep	three_prime_UTR	4594056	4594173	.	+	.	Parent=Os08t0178500-01
Chr08	irgsp1_rep	mRNA	4595778	4597522	.	+	.	ID=Os08t0178600-00;Name=Os08t0178600-00;Locus_id=Os08g0178600;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FZC8 (UniProt);TENOR=Os08t0178600-00;KEGG=Os08t0178600-00
Chr08	irgsp1_rep	CDS	4595778	4595996	.	+	0	Parent=Os08t0178600-00
Chr08	irgsp1_rep	CDS	4597073	4597522	.	+	0	Parent=Os08t0178600-00
Chr08	irgsp1_rep	mRNA	4597056	4597381	.	-	.	ID=Os08t0178650-00;Name=Os08t0178650-00;Locus_id=Os08g0178650;Note=Protein of unknown function wound-induced domain containing protein.;Transcript_evidence=tplb0003b07 (Wheat FLcDNA);ORF_evidence=longestORF;InterPro=Protein of unknown function wound-induced (IPR022251);TENOR=Os08t0178650-00
Chr08	irgsp1_rep	five_prime_UTR	4597348	4597381	.	-	.	Parent=Os08t0178650-00
Chr08	irgsp1_rep	CDS	4597069	4597347	.	-	0	Parent=Os08t0178650-00
Chr08	irgsp1_rep	three_prime_UTR	4597056	4597068	.	-	.	Parent=Os08t0178650-00
Chr08	irgsp1_rep	mRNA	4599751	4604714	.	-	.	ID=Os08t0178700-01;Name=Os08t0178700-01;Locus_id=Os08g0178700;CGSNL Gene Symbol=DGK2;CGSNL Gene Name=DIACYLGLYCEROL KINASE 2;Oryzabase Gene Symbol Synonym(s)=OsDGK2;Oryzabase Gene Name Synonym(s)=Diacylglycerol kinase 2;Note=Similar to Calmodulin-binding diacylglycerol kinase.;Transcript_evidence=AK066600 (DDBJ%2C Best hit);ORF_evidence=A8QM11 (UniProt);GO=Biological Process: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway (GO:0007205),Molecular Function: diacylglycerol kinase activity (GO:0004143);InterPro=Diacylglycerol kinase%2C accessory domain (IPR000756),Diacylglycerol kinase%2C catalytic domain (IPR001206),Diacylglycerol kinase%2C plant (IPR016961);NIAS_FLcDNA=J013071I18;Oryzabase=23312;Expression=AK066600;TENOR=Os08t0178700-01;KEGG=Os08t0178700-01 (EC:2.7.1.107)
Chr08	irgsp1_rep	five_prime_UTR	4604550	4604714	.	-	.	Parent=Os08t0178700-01
Chr08	irgsp1_rep	five_prime_UTR	4604265	4604271	.	-	.	Parent=Os08t0178700-01
Chr08	irgsp1_rep	CDS	4604043	4604264	.	-	0	Parent=Os08t0178700-01
Chr08	irgsp1_rep	CDS	4603809	4603931	.	-	0	Parent=Os08t0178700-01
Chr08	irgsp1_rep	CDS	4603576	4603704	.	-	0	Parent=Os08t0178700-01
Chr08	irgsp1_rep	CDS	4603280	4603365	.	-	0	Parent=Os08t0178700-01
Chr08	irgsp1_rep	CDS	4602879	4603002	.	-	1	Parent=Os08t0178700-01
Chr08	irgsp1_rep	CDS	4602703	4602751	.	-	0	Parent=Os08t0178700-01
Chr08	irgsp1_rep	CDS	4602337	4602419	.	-	2	Parent=Os08t0178700-01
Chr08	irgsp1_rep	CDS	4601777	4601844	.	-	0	Parent=Os08t0178700-01
Chr08	irgsp1_rep	CDS	4601273	4601350	.	-	1	Parent=Os08t0178700-01
Chr08	irgsp1_rep	CDS	4600761	4600848	.	-	1	Parent=Os08t0178700-01
Chr08	irgsp1_rep	CDS	4600513	4600629	.	-	0	Parent=Os08t0178700-01
Chr08	irgsp1_rep	CDS	4600009	4600350	.	-	0	Parent=Os08t0178700-01
Chr08	irgsp1_rep	three_prime_UTR	4599751	4600008	.	-	.	Parent=Os08t0178700-01
Chr08	irgsp1_rep	mRNA	4610545	4612918	.	-	.	ID=Os08t0178800-01;Name=Os08t0178800-01;Locus_id=Os08g0178800;Oryzabase Gene Symbol Synonym(s)=OsBBX24%2C BBX24;Oryzabase Gene Name Synonym(s)=B-box-containing protein 24;Note=Hypothetical conserved gene.;Transcript_evidence=AK287608 (DDBJ%2C Best hit);ORF_evidence=D9ZIW9 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C B-box (IPR000315);NIAS_FLcDNA=J065058C07;Oryzabase=11654;TENOR=Os08t0178800-01;KEGG=Os08t0178800-01
Chr08	irgsp1_rep	five_prime_UTR	4612735	4612918	.	-	.	Parent=Os08t0178800-01
Chr08	irgsp1_rep	CDS	4612144	4612734	.	-	0	Parent=Os08t0178800-01
Chr08	irgsp1_rep	CDS	4611672	4611916	.	-	0	Parent=Os08t0178800-01
Chr08	irgsp1_rep	CDS	4610917	4610926	.	-	1	Parent=Os08t0178800-01
Chr08	irgsp1_rep	three_prime_UTR	4610545	4610916	.	-	.	Parent=Os08t0178800-01
Chr08	irgsp1_rep	mRNA	4611477	4612098	.	-	.	ID=Os08t0178800-02;Name=Os08t0178800-02;Locus_id=Os08g0178800;Oryzabase Gene Symbol Synonym(s)=OsBBX24%2C BBX24;Oryzabase Gene Name Synonym(s)=B-box-containing protein 24;Note=Conserved hypothetical protein.;Transcript_evidence=AK063025 (DDBJ%2C Best hit);ORF_evidence=B8BBC9 (UniProt);NIAS_FLcDNA=001-110-B09;Oryzabase=11654;Expression=AK063025;TENOR=Os08t0178800-02;KEGG=Os08t0178800-02
Chr08	irgsp1_rep	five_prime_UTR	4611932	4612098	.	-	.	Parent=Os08t0178800-02
Chr08	irgsp1_rep	CDS	4611668	4611931	.	-	0	Parent=Os08t0178800-02
Chr08	irgsp1_rep	three_prime_UTR	4611477	4611667	.	-	.	Parent=Os08t0178800-02
Chr08	irgsp1_rep	mRNA	4617579	4620400	.	-	.	ID=Os08t0178900-00;Name=Os08t0178900-00;Locus_id=Os08g0178900;CGSNL Gene Symbol=MSL29;CGSNL Gene Name=MYB/SANT-LIKE 29;Oryzabase Gene Symbol Synonym(s)=OsMSL29;Oryzabase Gene Name Synonym(s)=Myb/SANT-LIKE 29;Note=Homeodomain-like domain containing protein.;Transcript_evidence=AK107646 (DDBJ%2C Secondary hit);ORF_evidence=A2ZU86 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),MYB-like (IPR017877);Oryzabase=22963;TENOR=Os08t0178900-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	4620235	4620400	.	-	0	Parent=Os08t0178900-00
Chr08	irgsp1_rep	CDS	4619749	4620082	.	-	2	Parent=Os08t0178900-00
Chr08	irgsp1_rep	CDS	4617994	4619050	.	-	1	Parent=Os08t0178900-00
Chr08	irgsp1_rep	three_prime_UTR	4617990	4617993	.	-	.	Parent=Os08t0178900-00
Chr08	irgsp1_rep	three_prime_UTR	4617579	4617873	.	-	.	Parent=Os08t0178900-00
Chr08	irgsp1_rep	mRNA	4630538	4638873	.	+	.	ID=Os08t0179000-01;Name=Os08t0179000-01;Locus_id=Os08g0179000;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK122092 (DDBJ%2C Best hit);ORF_evidence=B9FZD1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033124E22;TENOR=Os08t0179000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	4630538	4630789	.	+	.	Parent=Os08t0179000-01
Chr08	irgsp1_rep	five_prime_UTR	4631084	4632629	.	+	.	Parent=Os08t0179000-01
Chr08	irgsp1_rep	five_prime_UTR	4632740	4632850	.	+	.	Parent=Os08t0179000-01
Chr08	irgsp1_rep	five_prime_UTR	4633019	4633201	.	+	.	Parent=Os08t0179000-01
Chr08	irgsp1_rep	five_prime_UTR	4633300	4633418	.	+	.	Parent=Os08t0179000-01
Chr08	irgsp1_rep	five_prime_UTR	4633799	4633956	.	+	.	Parent=Os08t0179000-01
Chr08	irgsp1_rep	five_prime_UTR	4634527	4634779	.	+	.	Parent=Os08t0179000-01
Chr08	irgsp1_rep	CDS	4634780	4634840	.	+	0	Parent=Os08t0179000-01
Chr08	irgsp1_rep	CDS	4637085	4637183	.	+	2	Parent=Os08t0179000-01
Chr08	irgsp1_rep	CDS	4637260	4637441	.	+	2	Parent=Os08t0179000-01
Chr08	irgsp1_rep	CDS	4637530	4637740	.	+	0	Parent=Os08t0179000-01
Chr08	irgsp1_rep	CDS	4637832	4638069	.	+	2	Parent=Os08t0179000-01
Chr08	irgsp1_rep	CDS	4638162	4638315	.	+	1	Parent=Os08t0179000-01
Chr08	irgsp1_rep	CDS	4638386	4638679	.	+	0	Parent=Os08t0179000-01
Chr08	irgsp1_rep	three_prime_UTR	4638680	4638873	.	+	.	Parent=Os08t0179000-01
Chr08	irgsp1_rep	mRNA	4635580	4638628	.	-	.	ID=Os08t0179100-00;Name=Os08t0179100-00;Locus_id=Os08g0179100;Note=Hypothetical protein.;Transcript_evidence=tplb0036c01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0179100-00
Chr08	irgsp1_rep	five_prime_UTR	4638378	4638628	.	-	.	Parent=Os08t0179100-00
Chr08	irgsp1_rep	five_prime_UTR	4638169	4638311	.	-	.	Parent=Os08t0179100-00
Chr08	irgsp1_rep	five_prime_UTR	4637811	4638077	.	-	.	Parent=Os08t0179100-00
Chr08	irgsp1_rep	five_prime_UTR	4637549	4637720	.	-	.	Parent=Os08t0179100-00
Chr08	irgsp1_rep	five_prime_UTR	4637124	4637455	.	-	.	Parent=Os08t0179100-00
Chr08	irgsp1_rep	five_prime_UTR	4636105	4636838	.	-	.	Parent=Os08t0179100-00
Chr08	irgsp1_rep	CDS	4635721	4636104	.	-	0	Parent=Os08t0179100-00
Chr08	irgsp1_rep	three_prime_UTR	4635580	4635720	.	-	.	Parent=Os08t0179100-00
Chr08	irgsp1_rep	mRNA	4635505	4636456	.	+	.	ID=Os08t0179150-01;Name=Os08t0179150-01;Locus_id=Os08g0179150;Note=Hypothetical conserved gene.;Transcript_evidence=AK100172 (DDBJ%2C Best hit);ORF_evidence=B9FZD1 (UniProt);GO=Biological Process: recognition of pollen (GO:0048544),Molecular Function: sugar binding (GO:0005529);InterPro=S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480);NIAS_FLcDNA=J023026L09;TENOR=Os08t0179150-01;KEGG=Os08t0179150-01
Chr08	irgsp1_rep	five_prime_UTR	4635505	4635529	.	+	.	Parent=Os08t0179150-01
Chr08	irgsp1_rep	CDS	4635530	4636456	.	+	0	Parent=Os08t0179150-01
Chr08	irgsp1_rep	mRNA	4645325	4648753	.	-	.	ID=Os08t0179400-00;Name=Os08t0179400-00;Locus_id=Os08g0179400;Oryzabase Gene Symbol Synonym(s)=OsbHLH070;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 070;Note=Hypothetical conserved gene.;Transcript_evidence=EU975193 (DDBJ);ORF_evidence=NP_001175413.1 (RefSeq);Oryzabase=15357;TENOR=Os08t0179400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	4648353	4648753	.	-	0	Parent=Os08t0179400-00
Chr08	irgsp1_rep	CDS	4647626	4648115	.	-	1	Parent=Os08t0179400-00
Chr08	irgsp1_rep	CDS	4647113	4647236	.	-	0	Parent=Os08t0179400-00
Chr08	irgsp1_rep	CDS	4646895	4646896	.	-	2	Parent=Os08t0179400-00
Chr08	irgsp1_rep	three_prime_UTR	4646836	4646894	.	-	.	Parent=Os08t0179400-00
Chr08	irgsp1_rep	three_prime_UTR	4646631	4646696	.	-	.	Parent=Os08t0179400-00
Chr08	irgsp1_rep	three_prime_UTR	4646208	4646288	.	-	.	Parent=Os08t0179400-00
Chr08	irgsp1_rep	three_prime_UTR	4645325	4645426	.	-	.	Parent=Os08t0179400-00
Chr08	irgsp1_rep	mRNA	4672775	4675317	.	+	.	ID=Os08t0179900-01;Name=Os08t0179900-01;Locus_id=Os08g0179900;Note=Uncharacterised conserved protein UCP012943 domain containing protein.;Transcript_evidence=AK072550 (DDBJ%2C Best hit);ORF_evidence=A2YRU6 (UniProt);InterPro=Uncharacterised conserved protein UCP012943 (IPR016606);NIAS_FLcDNA=J023131C18;Expression=AK072550;TENOR=Os08t0179900-01;KEGG=Os08t0179900-01
Chr08	irgsp1_rep	five_prime_UTR	4672775	4672831	.	+	.	Parent=Os08t0179900-01
Chr08	irgsp1_rep	CDS	4672832	4673214	.	+	0	Parent=Os08t0179900-01
Chr08	irgsp1_rep	CDS	4674050	4674194	.	+	1	Parent=Os08t0179900-01
Chr08	irgsp1_rep	CDS	4674643	4674736	.	+	0	Parent=Os08t0179900-01
Chr08	irgsp1_rep	CDS	4674862	4675142	.	+	2	Parent=Os08t0179900-01
Chr08	irgsp1_rep	three_prime_UTR	4675143	4675317	.	+	.	Parent=Os08t0179900-01
Chr08	irgsp1_rep	mRNA	4676292	4680426	.	-	.	ID=Os08t0180000-01;Name=Os08t0180000-01;Locus_id=Os08g0180000;Note=mRNA capping enzyme%2C large subunit family protein.;Transcript_evidence=AK103587 (DDBJ%2C Best hit);ORF_evidence=B9FZD4 (UniProt);GO=Biological Process: mRNA capping (GO:0006370),Molecular Function: mRNA (guanine-N7-)-methyltransferase activity (GO:0004482);InterPro=mRNA capping enzyme%2C large subunit (IPR004971),mRNA (guanine-N(7))-methyltransferase (IPR016899);NIAS_FLcDNA=J033133C03;TENOR=Os08t0180000-01
Chr08	irgsp1_rep	five_prime_UTR	4680295	4680426	.	-	.	Parent=Os08t0180000-01
Chr08	irgsp1_rep	CDS	4680225	4680294	.	-	0	Parent=Os08t0180000-01
Chr08	irgsp1_rep	CDS	4679961	4680106	.	-	2	Parent=Os08t0180000-01
Chr08	irgsp1_rep	CDS	4679770	4679838	.	-	0	Parent=Os08t0180000-01
Chr08	irgsp1_rep	CDS	4679610	4679681	.	-	0	Parent=Os08t0180000-01
Chr08	irgsp1_rep	CDS	4679073	4679171	.	-	0	Parent=Os08t0180000-01
Chr08	irgsp1_rep	CDS	4678676	4678732	.	-	0	Parent=Os08t0180000-01
Chr08	irgsp1_rep	CDS	4678141	4678279	.	-	0	Parent=Os08t0180000-01
Chr08	irgsp1_rep	CDS	4677971	4678035	.	-	2	Parent=Os08t0180000-01
Chr08	irgsp1_rep	CDS	4677827	4677877	.	-	0	Parent=Os08t0180000-01
Chr08	irgsp1_rep	CDS	4677141	4677203	.	-	0	Parent=Os08t0180000-01
Chr08	irgsp1_rep	CDS	4676820	4676943	.	-	0	Parent=Os08t0180000-01
Chr08	irgsp1_rep	CDS	4676676	4676737	.	-	2	Parent=Os08t0180000-01
Chr08	irgsp1_rep	CDS	4676503	4676595	.	-	0	Parent=Os08t0180000-01
Chr08	irgsp1_rep	three_prime_UTR	4676292	4676502	.	-	.	Parent=Os08t0180000-01
Chr08	irgsp1_rep	mRNA	4676292	4680389	.	-	.	ID=Os08t0180000-02;Name=Os08t0180000-02;Locus_id=Os08g0180000;Note=mRNA capping enzyme%2C large subunit family protein.;Transcript_evidence=AK063927 (DDBJ%2C Best hit);ORF_evidence=B9FZD4 (UniProt);GO=Biological Process: mRNA capping (GO:0006370),Molecular Function: mRNA (guanine-N7-)-methyltransferase activity (GO:0004482);InterPro=mRNA capping enzyme%2C large subunit (IPR004971),mRNA (guanine-N(7))-methyltransferase (IPR016899);NIAS_FLcDNA=001-123-C08;TENOR=Os08t0180000-02
Chr08	irgsp1_rep	five_prime_UTR	4680295	4680389	.	-	.	Parent=Os08t0180000-02
Chr08	irgsp1_rep	CDS	4680225	4680294	.	-	0	Parent=Os08t0180000-02
Chr08	irgsp1_rep	CDS	4679961	4680106	.	-	2	Parent=Os08t0180000-02
Chr08	irgsp1_rep	CDS	4679770	4679838	.	-	0	Parent=Os08t0180000-02
Chr08	irgsp1_rep	CDS	4679610	4679681	.	-	0	Parent=Os08t0180000-02
Chr08	irgsp1_rep	CDS	4679073	4679171	.	-	0	Parent=Os08t0180000-02
Chr08	irgsp1_rep	CDS	4678676	4678732	.	-	0	Parent=Os08t0180000-02
Chr08	irgsp1_rep	CDS	4678141	4678279	.	-	0	Parent=Os08t0180000-02
Chr08	irgsp1_rep	CDS	4677971	4678035	.	-	2	Parent=Os08t0180000-02
Chr08	irgsp1_rep	CDS	4677827	4677877	.	-	0	Parent=Os08t0180000-02
Chr08	irgsp1_rep	CDS	4677141	4677203	.	-	0	Parent=Os08t0180000-02
Chr08	irgsp1_rep	CDS	4676820	4676943	.	-	0	Parent=Os08t0180000-02
Chr08	irgsp1_rep	CDS	4676676	4676737	.	-	2	Parent=Os08t0180000-02
Chr08	irgsp1_rep	CDS	4676503	4676595	.	-	0	Parent=Os08t0180000-02
Chr08	irgsp1_rep	three_prime_UTR	4676292	4676502	.	-	.	Parent=Os08t0180000-02
Chr08	irgsp1_rep	mRNA	4692655	4696632	.	+	.	ID=Os08t0180100-01;Name=Os08t0180100-01;Locus_id=Os08g0180100;Oryzabase Gene Symbol Synonym(s)=OsSET27%2C SDG701;Oryzabase Gene Name Synonym(s)=SET protein 27%2C SET DOMAIN GROUP701%2C SET DOMAIN GROUP 701;Note=Similar to SET domain-containing protein.;Transcript_evidence=AK121489 (DDBJ%2C Best hit);ORF_evidence=XP_002870257.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=SET domain (IPR001214);NIAS_FLcDNA=J023150L05;Oryzabase=13391;TENOR=Os08t0180100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	4692655	4692656	.	+	.	Parent=Os08t0180100-01
Chr08	irgsp1_rep	CDS	4692657	4692728	.	+	0	Parent=Os08t0180100-01
Chr08	irgsp1_rep	CDS	4692821	4692931	.	+	0	Parent=Os08t0180100-01
Chr08	irgsp1_rep	CDS	4693038	4693138	.	+	0	Parent=Os08t0180100-01
Chr08	irgsp1_rep	CDS	4694058	4694157	.	+	1	Parent=Os08t0180100-01
Chr08	irgsp1_rep	CDS	4694235	4694330	.	+	0	Parent=Os08t0180100-01
Chr08	irgsp1_rep	CDS	4694450	4694617	.	+	0	Parent=Os08t0180100-01
Chr08	irgsp1_rep	CDS	4694711	4694836	.	+	0	Parent=Os08t0180100-01
Chr08	irgsp1_rep	CDS	4694910	4694963	.	+	0	Parent=Os08t0180100-01
Chr08	irgsp1_rep	CDS	4695089	4695336	.	+	0	Parent=Os08t0180100-01
Chr08	irgsp1_rep	CDS	4695431	4695539	.	+	1	Parent=Os08t0180100-01
Chr08	irgsp1_rep	CDS	4695628	4695927	.	+	0	Parent=Os08t0180100-01
Chr08	irgsp1_rep	CDS	4696143	4696307	.	+	0	Parent=Os08t0180100-01
Chr08	irgsp1_rep	three_prime_UTR	4696308	4696632	.	+	.	Parent=Os08t0180100-01
Chr08	irgsp1_rep	mRNA	4694941	4696562	.	+	.	ID=Os08t0180100-02;Name=Os08t0180100-02;Locus_id=Os08g0180100;Oryzabase Gene Symbol Synonym(s)=OsSET27%2C SDG701;Oryzabase Gene Name Synonym(s)=SET protein 27%2C SET DOMAIN GROUP701%2C SET DOMAIN GROUP 701;Note=Similar to SET domain protein.;Transcript_evidence=AK058948 (DDBJ%2C Best hit);ORF_evidence=XP_002870257.1 (RefSeq);NIAS_FLcDNA=001-020-A05;Oryzabase=13391;Expression=AK058948;TENOR=Os08t0180100-02;KEGG=Os08t0180100-02
Chr08	irgsp1_rep	five_prime_UTR	4694941	4694942	.	+	.	Parent=Os08t0180100-02
Chr08	irgsp1_rep	CDS	4694943	4694963	.	+	0	Parent=Os08t0180100-02
Chr08	irgsp1_rep	CDS	4695089	4695336	.	+	0	Parent=Os08t0180100-02
Chr08	irgsp1_rep	CDS	4695431	4695539	.	+	1	Parent=Os08t0180100-02
Chr08	irgsp1_rep	CDS	4695628	4695927	.	+	0	Parent=Os08t0180100-02
Chr08	irgsp1_rep	CDS	4696143	4696307	.	+	0	Parent=Os08t0180100-02
Chr08	irgsp1_rep	three_prime_UTR	4696308	4696562	.	+	.	Parent=Os08t0180100-02
Chr08	irgsp1_rep	mRNA	4700668	4708354	.	+	.	ID=Os08t0180300-01;Name=Os08t0180300-01;Locus_id=Os08g0180300;CGSNL Gene Symbol=EDA16;CGSNL Gene Name=EMBRYO SAC DEVELOPMENT ARREST 16;Oryzabase Gene Symbol Synonym(s)=BRHIS1%2C OsEDA16;Oryzabase Gene Name Synonym(s)=BIT-responsive Histone-interacting SNF2 ATPase 1%2C embryo sac development arrest 16;Note=DEAD-like helicase%2C N-terminal domain containing protein.;Transcript_evidence=AK100130 (DDBJ%2C Best hit);ORF_evidence=Q25A47 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: helicase activity (GO:0004386),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: zinc ion binding (GO:0008270);InterPro=SNF2-related (IPR000330),Helicase%2C C-terminal (IPR001650),Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),DEAD-like helicase (IPR014001),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J023009O07;Oryzabase=19921;Expression=AK100130;TENOR=Os08t0180300-01;KEGG=Os08t0180300-01
Chr08	irgsp1_rep	five_prime_UTR	4700668	4700898	.	+	.	Parent=Os08t0180300-01
Chr08	irgsp1_rep	five_prime_UTR	4701597	4701815	.	+	.	Parent=Os08t0180300-01
Chr08	irgsp1_rep	CDS	4701816	4702416	.	+	0	Parent=Os08t0180300-01
Chr08	irgsp1_rep	CDS	4702523	4702696	.	+	2	Parent=Os08t0180300-01
Chr08	irgsp1_rep	CDS	4703379	4703455	.	+	2	Parent=Os08t0180300-01
Chr08	irgsp1_rep	CDS	4703550	4703624	.	+	0	Parent=Os08t0180300-01
Chr08	irgsp1_rep	CDS	4703711	4704707	.	+	0	Parent=Os08t0180300-01
Chr08	irgsp1_rep	CDS	4705258	4705388	.	+	2	Parent=Os08t0180300-01
Chr08	irgsp1_rep	CDS	4705928	4706146	.	+	0	Parent=Os08t0180300-01
Chr08	irgsp1_rep	CDS	4706646	4707149	.	+	0	Parent=Os08t0180300-01
Chr08	irgsp1_rep	CDS	4707256	4707465	.	+	0	Parent=Os08t0180300-01
Chr08	irgsp1_rep	CDS	4707950	4708054	.	+	0	Parent=Os08t0180300-01
Chr08	irgsp1_rep	three_prime_UTR	4708055	4708354	.	+	.	Parent=Os08t0180300-01
Chr08	irgsp1_rep	mRNA	4701026	4704349	.	+	.	ID=Os08t0180300-02;Name=Os08t0180300-02;Locus_id=Os08g0180300;CGSNL Gene Symbol=EDA16;CGSNL Gene Name=EMBRYO SAC DEVELOPMENT ARREST 16;Oryzabase Gene Symbol Synonym(s)=BRHIS1%2C OsEDA16;Oryzabase Gene Name Synonym(s)=BIT-responsive Histone-interacting SNF2 ATPase 1%2C embryo sac development arrest 16;Note=Hypothetical conserved gene.;Transcript_evidence=AK098970 (DDBJ%2C Best hit);ORF_evidence=B8BBD4 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP binding (GO:0005524);InterPro=SNF2-related (IPR000330);NIAS_FLcDNA=J013088O13;Oryzabase=19921;Expression=AK098970;TENOR=Os08t0180300-02;KEGG=Os08t0180300-02
Chr08	irgsp1_rep	five_prime_UTR	4701026	4701749	.	+	.	Parent=Os08t0180300-02
Chr08	irgsp1_rep	CDS	4701750	4702416	.	+	0	Parent=Os08t0180300-02
Chr08	irgsp1_rep	CDS	4702523	4702696	.	+	2	Parent=Os08t0180300-02
Chr08	irgsp1_rep	CDS	4703379	4703455	.	+	2	Parent=Os08t0180300-02
Chr08	irgsp1_rep	CDS	4703550	4703624	.	+	0	Parent=Os08t0180300-02
Chr08	irgsp1_rep	CDS	4703711	4704349	.	+	0	Parent=Os08t0180300-02
Chr08	irgsp1_rep	mRNA	4701040	4708339	.	+	.	ID=Os08t0180300-03;Name=Os08t0180300-03;Locus_id=Os08g0180300;CGSNL Gene Symbol=EDA16;CGSNL Gene Name=EMBRYO SAC DEVELOPMENT ARREST 16;Oryzabase Gene Symbol Synonym(s)=BRHIS1%2C OsEDA16;Oryzabase Gene Name Synonym(s)=BIT-responsive Histone-interacting SNF2 ATPase 1%2C embryo sac development arrest 16;Note=DEAD-like helicase%2C N-terminal domain containing protein.;Transcript_evidence=AK070470 (DDBJ%2C Best hit);ORF_evidence=Q25A47 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: helicase activity (GO:0004386),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: zinc ion binding (GO:0008270);InterPro=SNF2-related (IPR000330),Helicase%2C C-terminal (IPR001650),Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),DEAD-like helicase (IPR014001),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J023054E15;Oryzabase=19921;Expression=AK070470;TENOR=Os08t0180300-03;KEGG=Os08t0180300-03
Chr08	irgsp1_rep	five_prime_UTR	4701040	4701815	.	+	.	Parent=Os08t0180300-03
Chr08	irgsp1_rep	CDS	4701816	4702416	.	+	0	Parent=Os08t0180300-03
Chr08	irgsp1_rep	CDS	4702523	4702696	.	+	2	Parent=Os08t0180300-03
Chr08	irgsp1_rep	CDS	4703379	4703455	.	+	2	Parent=Os08t0180300-03
Chr08	irgsp1_rep	CDS	4703550	4703624	.	+	0	Parent=Os08t0180300-03
Chr08	irgsp1_rep	CDS	4703711	4704707	.	+	0	Parent=Os08t0180300-03
Chr08	irgsp1_rep	CDS	4705258	4705388	.	+	2	Parent=Os08t0180300-03
Chr08	irgsp1_rep	CDS	4705928	4706146	.	+	0	Parent=Os08t0180300-03
Chr08	irgsp1_rep	CDS	4706646	4707149	.	+	0	Parent=Os08t0180300-03
Chr08	irgsp1_rep	CDS	4707256	4707465	.	+	0	Parent=Os08t0180300-03
Chr08	irgsp1_rep	CDS	4707950	4708054	.	+	0	Parent=Os08t0180300-03
Chr08	irgsp1_rep	three_prime_UTR	4708055	4708339	.	+	.	Parent=Os08t0180300-03
Chr08	irgsp1_rep	mRNA	4709755	4710209	.	+	.	ID=Os08t0180400-00;Name=Os08t0180400-00;Locus_id=Os08g0180400;Note=Similar to Kinesin-like protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B6TG31 (UniProt);TENOR=Os08t0180400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	4709755	4709850	.	+	0	Parent=Os08t0180400-00
Chr08	irgsp1_rep	CDS	4709945	4709993	.	+	0	Parent=Os08t0180400-00
Chr08	irgsp1_rep	CDS	4710115	4710209	.	+	2	Parent=Os08t0180400-00
Chr08	irgsp1_rep	mRNA	4713705	4717694	.	+	.	ID=Os08t0180500-00;Name=Os08t0180500-00;Locus_id=Os08g0180500;Note=Zinc finger%2C BED-type predicted domain containing protein.;Transcript_evidence=BT066351 (DDBJ);ORF_evidence=B9FZD7 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Zinc finger%2C BED-type predicted (IPR003656),HAT dimerisation (IPR008906),Ribonuclease H-like (IPR012337);TENOR=Os08t0180500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	4713705	4714011	.	+	0	Parent=Os08t0180500-00
Chr08	irgsp1_rep	CDS	4715026	4717130	.	+	2	Parent=Os08t0180500-00
Chr08	irgsp1_rep	three_prime_UTR	4717131	4717134	.	+	.	Parent=Os08t0180500-00
Chr08	irgsp1_rep	three_prime_UTR	4717591	4717694	.	+	.	Parent=Os08t0180500-00
Chr08	irgsp1_rep	mRNA	4718736	4718969	.	-	.	ID=Os08t0180950-00;Name=Os08t0180950-00;Locus_id=Os08g0180950;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A2YRV2 (UniProt);TENOR=Os08t0180950-00;KEGG=Os08t0180950-00
Chr08	irgsp1_rep	CDS	4718736	4718969	.	-	0	Parent=Os08t0180950-00
Chr08	irgsp1_rep	mRNA	4774914	4777902	.	+	.	ID=Os08t0181750-01;Name=Os08t0181750-01;Locus_id=Os08g0181750;Note=Conserved hypothetical protein.;Transcript_evidence=AK288341 (DDBJ%2C Best hit);ORF_evidence=Q6Z854 (UniProt);NIAS_FLcDNA=J090023G20;TENOR=Os08t0181750-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	4774914	4775587	.	+	.	Parent=Os08t0181750-01
Chr08	irgsp1_rep	CDS	4775588	4775758	.	+	0	Parent=Os08t0181750-01
Chr08	irgsp1_rep	three_prime_UTR	4775759	4777902	.	+	.	Parent=Os08t0181750-01
Chr08	irgsp1_rep	mRNA	4779112	4779498	.	-	.	ID=Os08t0181925-00;Name=Os08t0181925-00;Locus_id=Os08g0181925;Note=Conserved hypothetical protein.;Transcript_evidence=EU953629 (DDBJ);ORF_evidence=Q6Z9T3 (UniProt);TENOR=Os08t0181925-00
Chr08	irgsp1_rep	CDS	4779112	4779498	.	-	0	Parent=Os08t0181925-00
Chr08	irgsp1_rep	mRNA	4817967	4820693	.	+	.	ID=Os08t0182400-01;Name=Os08t0182400-01;Locus_id=Os08g0182400;Note=Conserved hypothetical protein.;Transcript_evidence=AK059491 (DDBJ%2C Best hit);ORF_evidence=NP_001061148.1 (RefSeq);NIAS_FLcDNA=001-028-H01;Expression=AK059491;TENOR=Os08t0182400-01;KEGG=Os08t0182400-01
Chr08	irgsp1_rep	five_prime_UTR	4817967	4818049	.	+	.	Parent=Os08t0182400-01
Chr08	irgsp1_rep	CDS	4818050	4818247	.	+	0	Parent=Os08t0182400-01
Chr08	irgsp1_rep	CDS	4819975	4820294	.	+	0	Parent=Os08t0182400-01
Chr08	irgsp1_rep	CDS	4820445	4820523	.	+	1	Parent=Os08t0182400-01
Chr08	irgsp1_rep	three_prime_UTR	4820524	4820693	.	+	.	Parent=Os08t0182400-01
Chr08	irgsp1_rep	mRNA	4897613	4900341	.	-	.	ID=Os08t0183900-01;Name=Os08t0183900-01;Locus_id=Os08g0183900;CGSNL Gene Symbol=CCR29;CGSNL Gene Name=CINNAMOYL-COA REDUCTASE 29;Oryzabase Gene Symbol Synonym(s)=OsCCR29;Oryzabase Gene Name Synonym(s)=Cinnamoyl-CoA reductase 29;Note=Similar to dihydroflavonol-4-reductase.;Transcript_evidence=AK240684 (DDBJ%2C Best hit);ORF_evidence=B6T7H1 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J043001P15;Oryzabase=22254;TENOR=Os08t0183900-01;KEGG=Os08t0183900-01
Chr08	irgsp1_rep	five_prime_UTR	4900328	4900341	.	-	.	Parent=Os08t0183900-01
Chr08	irgsp1_rep	CDS	4900129	4900327	.	-	0	Parent=Os08t0183900-01
Chr08	irgsp1_rep	CDS	4899841	4900010	.	-	2	Parent=Os08t0183900-01
Chr08	irgsp1_rep	CDS	4899430	4899615	.	-	0	Parent=Os08t0183900-01
Chr08	irgsp1_rep	CDS	4898864	4899040	.	-	0	Parent=Os08t0183900-01
Chr08	irgsp1_rep	three_prime_UTR	4898230	4898863	.	-	.	Parent=Os08t0183900-01
Chr08	irgsp1_rep	three_prime_UTR	4897613	4898111	.	-	.	Parent=Os08t0183900-01
Chr08	irgsp1_rep	mRNA	4947263	4952151	.	+	.	ID=Os08t0184300-01;Name=Os08t0184300-01;Locus_id=Os08g0184300;Note=Hypothetical protein.;Transcript_evidence=AK107574 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-130-D06;Expression=AK107574;TENOR=Os08t0184300-01;KEGG=Os08t0184300-01
Chr08	irgsp1_rep	five_prime_UTR	4947263	4947400	.	+	.	Parent=Os08t0184300-01
Chr08	irgsp1_rep	CDS	4947401	4947445	.	+	0	Parent=Os08t0184300-01
Chr08	irgsp1_rep	CDS	4947541	4947615	.	+	0	Parent=Os08t0184300-01
Chr08	irgsp1_rep	CDS	4949573	4949896	.	+	0	Parent=Os08t0184300-01
Chr08	irgsp1_rep	CDS	4951800	4951934	.	+	0	Parent=Os08t0184300-01
Chr08	irgsp1_rep	three_prime_UTR	4951935	4952151	.	+	.	Parent=Os08t0184300-01
Chr08	irgsp1_rep	mRNA	4967079	4969131	.	-	.	ID=Os08t0184600-01;Name=Os08t0184600-01;Locus_id=Os08g0184600;Note=Conserved hypothetical protein.;Transcript_evidence=AK103059 (DDBJ%2C Best hit);ORF_evidence=B9FZE1 (UniProt);NIAS_FLcDNA=J033117L12;Expression=AK103059;TENOR=Os08t0184600-01;KEGG=Os08t0184600-01
Chr08	irgsp1_rep	five_prime_UTR	4968564	4969131	.	-	.	Parent=Os08t0184600-01
Chr08	irgsp1_rep	CDS	4968157	4968563	.	-	0	Parent=Os08t0184600-01
Chr08	irgsp1_rep	CDS	4968012	4968078	.	-	1	Parent=Os08t0184600-01
Chr08	irgsp1_rep	three_prime_UTR	4967897	4968011	.	-	.	Parent=Os08t0184600-01
Chr08	irgsp1_rep	three_prime_UTR	4967079	4967540	.	-	.	Parent=Os08t0184600-01
Chr08	irgsp1_rep	mRNA	4966466	4969060	.	-	.	ID=Os08t0184600-02;Name=Os08t0184600-02;Locus_id=Os08g0184600;Note=Conserved hypothetical protein.;Transcript_evidence=AK071991 (DDBJ%2C Best hit);ORF_evidence=B9FZE1 (UniProt);NIAS_FLcDNA=J013092P07;Expression=AK071991;TENOR=Os08t0184600-02;KEGG=Os08t0184600-02
Chr08	irgsp1_rep	five_prime_UTR	4968564	4969060	.	-	.	Parent=Os08t0184600-02
Chr08	irgsp1_rep	CDS	4968157	4968563	.	-	0	Parent=Os08t0184600-02
Chr08	irgsp1_rep	CDS	4968012	4968078	.	-	1	Parent=Os08t0184600-02
Chr08	irgsp1_rep	three_prime_UTR	4967897	4968011	.	-	.	Parent=Os08t0184600-02
Chr08	irgsp1_rep	three_prime_UTR	4966466	4967540	.	-	.	Parent=Os08t0184600-02
Chr08	irgsp1_rep	mRNA	4966415	4969036	.	-	.	ID=Os08t0184600-03;Name=Os08t0184600-03;Locus_id=Os08g0184600;Note=Conserved hypothetical protein.;Transcript_evidence=AK099057 (DDBJ%2C Best hit);ORF_evidence=B9FZE1 (UniProt);NIAS_FLcDNA=J013155E13;Expression=AK099057;TENOR=Os08t0184600-03;KEGG=Os08t0184600-03
Chr08	irgsp1_rep	five_prime_UTR	4968564	4969036	.	-	.	Parent=Os08t0184600-03
Chr08	irgsp1_rep	CDS	4968157	4968563	.	-	0	Parent=Os08t0184600-03
Chr08	irgsp1_rep	CDS	4968012	4968078	.	-	1	Parent=Os08t0184600-03
Chr08	irgsp1_rep	three_prime_UTR	4967897	4968011	.	-	.	Parent=Os08t0184600-03
Chr08	irgsp1_rep	three_prime_UTR	4966415	4967540	.	-	.	Parent=Os08t0184600-03
Chr08	irgsp1_rep	mRNA	4968125	4968451	.	+	.	ID=Os08t0184700-00;Name=Os08t0184700-00;Locus_id=Os08g0184700;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5N7G2 (UniProt);TENOR=Os08t0184700-00;KEGG=Os08t0184700-00
Chr08	irgsp1_rep	CDS	4968125	4968451	.	+	0	Parent=Os08t0184700-00
Chr08	irgsp1_rep	mRNA	4971046	4973826	.	-	.	ID=Os08t0184800-02;Name=Os08t0184800-02;Locus_id=Os08g0184800;Note=Conserved hypothetical protein.;Transcript_evidence=AK072453 (DDBJ%2C Best hit),AK066827 (DDBJ%2C Best hit),AK071706 (DDBJ%2C Best hit);ORF_evidence=B7ECP6 (UniProt);NIAS_FLcDNA=J023119K08,J013075C16,J023112F07;TENOR=Os08t0184800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	4973313	4973826	.	-	.	Parent=Os08t0184800-02
Chr08	irgsp1_rep	CDS	4973209	4973312	.	-	0	Parent=Os08t0184800-02
Chr08	irgsp1_rep	CDS	4972982	4973118	.	-	1	Parent=Os08t0184800-02
Chr08	irgsp1_rep	CDS	4972676	4972768	.	-	2	Parent=Os08t0184800-02
Chr08	irgsp1_rep	CDS	4972463	4972491	.	-	2	Parent=Os08t0184800-02
Chr08	irgsp1_rep	three_prime_UTR	4971046	4972462	.	-	.	Parent=Os08t0184800-02
Chr08	irgsp1_rep	mRNA	4972402	4973777	.	-	.	ID=Os08t0184800-03;Name=Os08t0184800-03;Locus_id=Os08g0184800;Note=Conserved hypothetical protein.;Transcript_evidence=AK104021 (DDBJ%2C Best hit);ORF_evidence=NP_001175554.1 (RefSeq);NIAS_FLcDNA=001-008-D04;TENOR=Os08t0184800-03;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	4973313	4973777	.	-	.	Parent=Os08t0184800-03
Chr08	irgsp1_rep	CDS	4973209	4973312	.	-	0	Parent=Os08t0184800-03
Chr08	irgsp1_rep	CDS	4972982	4973118	.	-	1	Parent=Os08t0184800-03
Chr08	irgsp1_rep	CDS	4972676	4972768	.	-	2	Parent=Os08t0184800-03
Chr08	irgsp1_rep	CDS	4972463	4972491	.	-	2	Parent=Os08t0184800-03
Chr08	irgsp1_rep	three_prime_UTR	4972402	4972462	.	-	.	Parent=Os08t0184800-03
Chr08	irgsp1_rep	mRNA	4999380	5002096	.	-	.	ID=Os08t0185300-01;Name=Os08t0185300-01;Locus_id=Os08g0185300;Note=Conserved hypothetical protein.;Transcript_evidence=AK099155 (DDBJ%2C Best hit);ORF_evidence=NP_001061141.1 (RefSeq);NIAS_FLcDNA=J023072O13;Expression=AK099155;TENOR=Os08t0185300-01;KEGG=Os08t0185300-01
Chr08	irgsp1_rep	five_prime_UTR	5002020	5002096	.	-	.	Parent=Os08t0185300-01
Chr08	irgsp1_rep	CDS	5001822	5002019	.	-	0	Parent=Os08t0185300-01
Chr08	irgsp1_rep	CDS	4999776	5000095	.	-	0	Parent=Os08t0185300-01
Chr08	irgsp1_rep	CDS	4999548	4999626	.	-	1	Parent=Os08t0185300-01
Chr08	irgsp1_rep	three_prime_UTR	4999380	4999547	.	-	.	Parent=Os08t0185300-01
Chr08	irgsp1_rep	mRNA	5027574	5029922	.	+	.	ID=Os08t0185701-00;Name=Os08t0185701-00;Locus_id=Os08g0185701;Note=Non-protein coding transcript.;Transcript_evidence=CT836036 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os08t0185701-00
Chr08	irgsp1_rep	exon	5027574	5027666	.	+	.	Parent=Os08t0185701-00
Chr08	irgsp1_rep	exon	5029590	5029922	.	+	.	Parent=Os08t0185701-00
Chr08	irgsp1_rep	mRNA	5034835	5035725	.	-	.	ID=Os08t0185900-01;Name=Os08t0185900-01;Locus_id=Os08g0185900;Note=Conserved hypothetical protein.;Transcript_evidence=AK108323 (DDBJ%2C Best hit);ORF_evidence=B8BBD9 (UniProt);NIAS_FLcDNA=002-141-H04;TENOR=Os08t0185900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	5035725	5035725	.	-	.	Parent=Os08t0185900-01
Chr08	irgsp1_rep	CDS	5035470	5035724	.	-	0	Parent=Os08t0185900-01
Chr08	irgsp1_rep	three_prime_UTR	5034835	5035469	.	-	.	Parent=Os08t0185900-01
Chr08	irgsp1_rep	mRNA	5046733	5048608	.	-	.	ID=Os08t0186200-00;Name=Os08t0186200-00;Locus_id=Os08g0186200;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FZE4 (UniProt);TENOR=Os08t0186200-00;KEGG=Os08t0186200-00
Chr08	irgsp1_rep	CDS	5048468	5048608	.	-	0	Parent=Os08t0186200-00
Chr08	irgsp1_rep	CDS	5046733	5046975	.	-	0	Parent=Os08t0186200-00
Chr08	irgsp1_rep	mRNA	5109268	5116778	.	+	.	ID=Os08t0187500-01;Name=Os08t0187500-01;Locus_id=Os08g0187500;CGSNL Gene Symbol=ROC1;CGSNL Gene Name=RICE OUTMOST CELL-SPECIFIC GENE 1;Oryzabase Gene Symbol Synonym(s)=Roc1(t)%2C GL2-1;Oryzabase Gene Name Synonym(s)=Rice outmost cell-specific gene 1(t)%2C Rice outermost cell-specific gene-1%2C Homeobox-leucine zipper protein ROC1%2C Homeodomain transcription factor ROC1%2C HD-ZIP protein ROC1%2C Protein RICE OUTERMOST CELL-SPECIFIC 1%2C GLABRA 2-like homeobox protein 1;Note=Similar to Roc1.;Transcript_evidence=AK120496 (DDBJ%2C Best hit);ORF_evidence=Q6ZAR0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: transcription regulatory region sequence-specific DNA binding (GO:0000976),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Helix-turn-helix motif%2C lambda-like repressor (IPR000047),Homeobox (IPR001356),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Homeobox%2C conserved site (IPR017970);NIAS_FLcDNA=J013120I03;Oryzabase=2862;Expression=AK120496;TENOR=Os08t0187500-01;KEGG=Os08t0187500-01
Chr08	irgsp1_rep	five_prime_UTR	5109268	5109466	.	+	.	Parent=Os08t0187500-01
Chr08	irgsp1_rep	five_prime_UTR	5109570	5109791	.	+	.	Parent=Os08t0187500-01
Chr08	irgsp1_rep	CDS	5109792	5109878	.	+	0	Parent=Os08t0187500-01
Chr08	irgsp1_rep	CDS	5110870	5111150	.	+	0	Parent=Os08t0187500-01
Chr08	irgsp1_rep	CDS	5111303	5111418	.	+	1	Parent=Os08t0187500-01
Chr08	irgsp1_rep	CDS	5113125	5113251	.	+	2	Parent=Os08t0187500-01
Chr08	irgsp1_rep	CDS	5113266	5113635	.	+	1	Parent=Os08t0187500-01
Chr08	irgsp1_rep	three_prime_UTR	5113636	5113765	.	+	.	Parent=Os08t0187500-01
Chr08	irgsp1_rep	three_prime_UTR	5113858	5113959	.	+	.	Parent=Os08t0187500-01
Chr08	irgsp1_rep	three_prime_UTR	5114108	5114308	.	+	.	Parent=Os08t0187500-01
Chr08	irgsp1_rep	three_prime_UTR	5114464	5114638	.	+	.	Parent=Os08t0187500-01
Chr08	irgsp1_rep	three_prime_UTR	5114798	5115069	.	+	.	Parent=Os08t0187500-01
Chr08	irgsp1_rep	three_prime_UTR	5115169	5115264	.	+	.	Parent=Os08t0187500-01
Chr08	irgsp1_rep	three_prime_UTR	5115783	5116210	.	+	.	Parent=Os08t0187500-01
Chr08	irgsp1_rep	three_prime_UTR	5116305	5116778	.	+	.	Parent=Os08t0187500-01
Chr08	irgsp1_rep	mRNA	5114107	5114622	.	-	.	ID=Os08t0187600-00;Name=Os08t0187600-00;Locus_id=Os08g0187600;Note=Non-protein coding transcript.;Transcript_evidence=BT086509 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0187600-00
Chr08	irgsp1_rep	exon	5114469	5114622	.	-	.	Parent=Os08t0187600-00
Chr08	irgsp1_rep	exon	5114107	5114322	.	-	.	Parent=Os08t0187600-00
Chr08	irgsp1_rep	mRNA	5119189	5128123	.	-	.	ID=Os08t0187700-01;Name=Os08t0187700-01;Locus_id=Os08g0187700;Note=ENTH/VHS domain containing protein.;Transcript_evidence=AK099689 (DDBJ%2C Best hit);ORF_evidence=A2YRX5 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA polymerase II%2C large subunit%2C CTD (IPR006569),Domain of unknown function DUF618 (IPR006903),Zinc finger%2C C2H2 (IPR007087),ENTH/VHS (IPR008942);NIAS_FLcDNA=J013073B17;Expression=AK099689;TENOR=Os08t0187700-01;KEGG=Os08t0187700-01
Chr08	irgsp1_rep	five_prime_UTR	5127979	5128123	.	-	.	Parent=Os08t0187700-01
Chr08	irgsp1_rep	CDS	5127709	5127978	.	-	0	Parent=Os08t0187700-01
Chr08	irgsp1_rep	CDS	5126274	5126639	.	-	0	Parent=Os08t0187700-01
Chr08	irgsp1_rep	CDS	5125974	5126090	.	-	0	Parent=Os08t0187700-01
Chr08	irgsp1_rep	CDS	5123242	5123958	.	-	0	Parent=Os08t0187700-01
Chr08	irgsp1_rep	CDS	5121598	5122527	.	-	0	Parent=Os08t0187700-01
Chr08	irgsp1_rep	CDS	5120980	5121495	.	-	0	Parent=Os08t0187700-01
Chr08	irgsp1_rep	three_prime_UTR	5120964	5120979	.	-	.	Parent=Os08t0187700-01
Chr08	irgsp1_rep	three_prime_UTR	5119189	5119428	.	-	.	Parent=Os08t0187700-01
Chr08	irgsp1_rep	mRNA	5139674	5143593	.	+	.	ID=Os08t0187800-01;Name=Os08t0187800-01;Locus_id=Os08g0187800;RAP-DB Gene Symbol Synonym(s)=OsGPT1;RAP-DB Gene Name Synonym(s)=glucose 6-phosphate/phosphate translocator 1;CGSNL Gene Symbol=GPT1;CGSNL Gene Name=GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1;Oryzabase Gene Symbol Synonym(s)=OsGPT1;Note=Glucose 6-phosphate/phosphate translocator%2C Starch biosynthesis;Transcript_evidence=AK060577;ORF_evidence=Q6YZC3;GO=Biological Process: transmembrane transport (GO:0055085),Molecular Function: transmembrane transporter activity (GO:0022857),Cellular Component: integral component of membrane (GO:0016021);InterPro=Triose phosphate/phosphoenolpyruvate translocator (IPR004696),Sugar phosphate transporter domain (IPR004853);NIAS_FLcDNA=001-023-E05;Manual Curation=July 23%2C 2019;Literature_PMID=22870386,16362329;Oryzabase=8721;Expression=AK060577;TENOR=Os08t0187800-01;KEGG=Os08t0187800-01
Chr08	irgsp1_rep	five_prime_UTR	5139674	5139909	.	+	.	Parent=Os08t0187800-01
Chr08	irgsp1_rep	five_prime_UTR	5140696	5140700	.	+	.	Parent=Os08t0187800-01
Chr08	irgsp1_rep	CDS	5140701	5141189	.	+	0	Parent=Os08t0187800-01
Chr08	irgsp1_rep	CDS	5141281	5141506	.	+	0	Parent=Os08t0187800-01
Chr08	irgsp1_rep	CDS	5142039	5142261	.	+	2	Parent=Os08t0187800-01
Chr08	irgsp1_rep	CDS	5142659	5142872	.	+	1	Parent=Os08t0187800-01
Chr08	irgsp1_rep	CDS	5143321	5143332	.	+	0	Parent=Os08t0187800-01
Chr08	irgsp1_rep	three_prime_UTR	5143333	5143593	.	+	.	Parent=Os08t0187800-01
Chr08	irgsp1_rep	mRNA	5145659	5146534	.	+	.	ID=Os08t0187900-00;Name=Os08t0187900-00;Locus_id=Os08g0187900;Note=Ubiquitin-conjugating enzyme%2C E2 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6YZC2 (UniProt);InterPro=Kua-ubiquitin conjugating enzyme hybrid%2C localisation (IPR019547);TENOR=Os08t0187900-00;KEGG=Os08t0187900-00
Chr08	irgsp1_rep	CDS	5145659	5146534	.	+	0	Parent=Os08t0187900-00
Chr08	irgsp1_rep	mRNA	5147424	5150332	.	-	.	ID=Os08t0188000-01;Name=Os08t0188000-01;Locus_id=Os08g0188000;Note=RNA-binding%2C CRM domain domain containing protein.;Transcript_evidence=AK107337 (DDBJ%2C Best hit);ORF_evidence=NP_200300.1 (RefSeq);GO=Molecular Function: RNA binding (GO:0003723);InterPro=RNA-binding%2C CRM domain (IPR001890);NIAS_FLcDNA=002-126-F11;Oryzabase=23506;Expression=AK107337;TENOR=Os08t0188000-01;KEGG=Os08t0188000-01
Chr08	irgsp1_rep	CDS	5149843	5150332	.	-	0	Parent=Os08t0188000-01
Chr08	irgsp1_rep	CDS	5149216	5149343	.	-	2	Parent=Os08t0188000-01
Chr08	irgsp1_rep	CDS	5148898	5149123	.	-	0	Parent=Os08t0188000-01
Chr08	irgsp1_rep	CDS	5148641	5148768	.	-	2	Parent=Os08t0188000-01
Chr08	irgsp1_rep	CDS	5147949	5148062	.	-	0	Parent=Os08t0188000-01
Chr08	irgsp1_rep	three_prime_UTR	5147424	5147948	.	-	.	Parent=Os08t0188000-01
Chr08	irgsp1_rep	mRNA	5165230	5165766	.	-	.	ID=Os08t0188151-00;Name=Os08t0188151-00;Locus_id=Os08g0188151;Note=Hypothetical gene.;Transcript_evidence=CT835997 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os08t0188151-00
Chr08	irgsp1_rep	five_prime_UTR	5165766	5165766	.	-	.	Parent=Os08t0188151-00
Chr08	irgsp1_rep	CDS	5165517	5165765	.	-	0	Parent=Os08t0188151-00
Chr08	irgsp1_rep	three_prime_UTR	5165230	5165516	.	-	.	Parent=Os08t0188151-00
Chr08	irgsp1_rep	mRNA	5186875	5187698	.	+	.	ID=Os08t0188900-01;Name=Os08t0188900-01;Locus_id=Os08g0188900;RAP-DB Gene Symbol Synonym(s)=GLP8-1%2C OsGLP8-1;RAP-DB Gene Name Synonym(s)=GERMIN-LIKE PROTEIN 8-1%2C Germin-like protein 8-1;CGSNL Gene Symbol=GLP8-1;CGSNL Gene Name=GERMIN-LIKE PROTEIN 8-1;Oryzabase Gene Symbol Synonym(s)=OsGLP8-1;Oryzabase Gene Name Synonym(s)=Germin-like protein 8-1;Note=Germin-like protein 8-1%2C Disease resistance;Transcript_evidence=Inferred from literature;ORF_evidence=Q6YZB2 (UniProt);GO=Cellular Component: apoplast (GO:0048046),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),Germin%2C manganese binding site (IPR019780);Manual Curation=May 28%2C 2009;Literature_PMID=19011003;Oryzabase=8993;TENOR=Os08t0188900-00
Chr08	irgsp1_rep	CDS	5186875	5186995	.	+	0	Parent=Os08t0188900-01
Chr08	irgsp1_rep	CDS	5187160	5187698	.	+	2	Parent=Os08t0188900-01
Chr08	irgsp1_rep	mRNA	5208410	5209440	.	+	.	ID=Os08t0189100-01;Name=Os08t0189100-01;Locus_id=Os08g0189100;RAP-DB Gene Symbol Synonym(s)=GLP8-2%2C OsGLP8-2%2C GER3%2C OsGER3%2C GLP16%2C OsEnS-117;RAP-DB Gene Name Synonym(s)=GERMIN-LIKE PROTEIN 8-2%2C Germin-like protein 8-2%2C Germin-like protein 3%2C Germin-like protein 16%2C endosperm-specific gene 117;CGSNL Gene Symbol=GLP8-2;CGSNL Gene Name=GERMIN-LIKE PROTEIN 8-2;Oryzabase Gene Symbol Synonym(s)=OsGLP8-2%2C GER3%2C OsGER3%2C GLP16%2C OsEnS-117;Oryzabase Gene Name Synonym(s)=Germin-like protein 8-2%2C Germin-like protein 3%2C Germin-like protein 16%2C endosperm-specific gene 117;Note=Germin-like protein 8-2%2C Disease resistance;Transcript_evidence=EF122484 (Genbank),AF042489 (Genbank),EF444528 (Genbank),AK062862 (Genbank);ORF_evidence=Q6YZA9 (UniProt);GO=Cellular Component: apoplast (GO:0048046),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),Germin%2C manganese binding site (IPR019780);NIAS_FLcDNA=001-108-B05;Manual Curation=May 29%2C 2009;Literature_PMID=19011003,11264412;Oryzabase=8239;Expression=AK062862;TENOR=Os08t0189100-01;KEGG=Os08t0189100-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	5208410	5208433	.	+	.	Parent=Os08t0189100-01
Chr08	irgsp1_rep	CDS	5208434	5208557	.	+	0	Parent=Os08t0189100-01
Chr08	irgsp1_rep	CDS	5208732	5209273	.	+	2	Parent=Os08t0189100-01
Chr08	irgsp1_rep	three_prime_UTR	5209274	5209440	.	+	.	Parent=Os08t0189100-01
Chr08	irgsp1_rep	mRNA	5222230	5223304	.	+	.	ID=Os08t0189200-01;Name=Os08t0189200-01;Locus_id=Os08g0189200;RAP-DB Gene Symbol Synonym(s)=GLP8-3%2C OsGLP8-3%2C GER2;RAP-DB Gene Name Synonym(s)=GERMIN-LIKE PROTEIN 8-3%2C Germin-like protein 8-3%2C germin-like protein 2;CGSNL Gene Symbol=GLP8-3;CGSNL Gene Name=GERMIN-LIKE PROTEIN 8-3;Oryzabase Gene Symbol Synonym(s)=OsGLP8-3%2C GER2;Oryzabase Gene Name Synonym(s)=Germin-like protein 8-3%2C germin-like protein 2;Note=Germin-like protein 8-3%2C Disease resistance;Transcript_evidence=AF032972 (Genbank),AK059781 (Genbank);ORF_evidence=Q6YZZ7 (UniProt);GO=Cellular Component: apoplast (GO:0048046),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),Germin%2C manganese binding site (IPR019780);NIAS_FLcDNA=006-204-C06;Manual Curation=May 29%2C 2009;Literature_PMID=19011003,11264412;Oryzabase=8992;Expression=AK059781;TENOR=Os08t0189200-01;KEGG=Os08t0189200-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	5222230	5222274	.	+	.	Parent=Os08t0189200-01
Chr08	irgsp1_rep	CDS	5222275	5222395	.	+	0	Parent=Os08t0189200-01
Chr08	irgsp1_rep	CDS	5222554	5223110	.	+	2	Parent=Os08t0189200-01
Chr08	irgsp1_rep	three_prime_UTR	5223111	5223304	.	+	.	Parent=Os08t0189200-01
Chr08	irgsp1_rep	mRNA	5228827	5229949	.	+	.	ID=Os08t0189300-01;Name=Os08t0189300-01;Locus_id=Os08g0189300;RAP-DB Gene Symbol Synonym(s)=GLP8-4%2C OsGLP8-4%2C GER1;RAP-DB Gene Name Synonym(s)=GERMIN-LIKE PROTEIN 8-4%2C Germin-like protein 8-4%2C germin-like protein 1;CGSNL Gene Symbol=GLP8-4;CGSNL Gene Name=GERMIN-LIKE PROTEIN 8-4;Oryzabase Gene Symbol Synonym(s)=OsGLP8-4%2C GER1. OsGer1;Oryzabase Gene Name Synonym(s)=Germin-like protein 8-4%2C germin-like protein 1;Note=Germin-like protein 8-4%2C Disease resistance;Transcript_evidence=AF032971 (Genbank),AK059338 (Genbank);ORF_evidence=Q6YZZ6 (UniProt);GO=Cellular Component: apoplast (GO:0048046),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),Germin%2C manganese binding site (IPR019780);NIAS_FLcDNA=001-026-B02;Manual Curation=May 29%2C 2009;Literature_PMID=19011003,11264412;Oryzabase=10288;Expression=AK059338;TENOR=Os08t0189300-01;KEGG=Os08t0189300-01
Chr08	irgsp1_rep	five_prime_UTR	5228827	5228879	.	+	.	Parent=Os08t0189300-01
Chr08	irgsp1_rep	CDS	5228880	5229000	.	+	0	Parent=Os08t0189300-01
Chr08	irgsp1_rep	CDS	5229231	5229784	.	+	2	Parent=Os08t0189300-01
Chr08	irgsp1_rep	three_prime_UTR	5229785	5229949	.	+	.	Parent=Os08t0189300-01
Chr08	irgsp1_rep	mRNA	5233864	5234719	.	+	.	ID=Os08t0189400-01;Name=Os08t0189400-01;Locus_id=Os08g0189400;RAP-DB Gene Symbol Synonym(s)=GLP8-5%2C OsGLP8-5;RAP-DB Gene Name Synonym(s)=GERMIN-LIKE PROTEIN 8-5%2C Germin-like protein 8-5;CGSNL Gene Symbol=GLP8-5;CGSNL Gene Name=GERMIN-LIKE PROTEIN 8-5;Oryzabase Gene Symbol Synonym(s)=OsGLP8-5;Oryzabase Gene Name Synonym(s)=Germin-like protein 8-5;Note=Germin-like protein 8-5%2C Disease resistance;Transcript_evidence=Inferred from literature;ORF_evidence=Q6YZA6 (UniProt);GO=Cellular Component: apoplast (GO:0048046),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),Germin%2C manganese binding site (IPR019780);Manual Curation=May 26%2C 2009;Literature_PMID=19011003;Oryzabase=8240;TENOR=Os08t0189400-00
Chr08	irgsp1_rep	CDS	5233864	5233981	.	+	0	Parent=Os08t0189400-01
Chr08	irgsp1_rep	CDS	5234163	5234719	.	+	2	Parent=Os08t0189400-01
Chr08	irgsp1_rep	mRNA	5238999	5240148	.	+	.	ID=Os08t0189500-01;Name=Os08t0189500-01;Locus_id=Os08g0189500;RAP-DB Gene Symbol Synonym(s)=GLP8-6%2C OsGLP8-6;RAP-DB Gene Name Synonym(s)=GERMIN-LIKE PROTEIN 8-6%2C Germin-like protein 8-6;CGSNL Gene Symbol=GLP8-6;CGSNL Gene Name=GERMIN-LIKE PROTEIN 8-6;Oryzabase Gene Symbol Synonym(s)=OsGLP8-6;Oryzabase Gene Name Synonym(s)=Germin-like protein 8-6;Note=Germin-like protein 8-6%2C Disease resistance;Transcript_evidence=AK243135 (Genbank);ORF_evidence=Q6YZA4 (UniProt);GO=Cellular Component: apoplast (GO:0048046),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),Germin%2C manganese binding site (IPR019780);NIAS_FLcDNA=J100030N12;Manual Curation=May 26%2C 2009;Literature_PMID=19011003;Oryzabase=8241;TENOR=Os08t0189500-01;KEGG=Os08t0189500-01
Chr08	irgsp1_rep	five_prime_UTR	5238999	5239071	.	+	.	Parent=Os08t0189500-01
Chr08	irgsp1_rep	CDS	5239072	5239192	.	+	0	Parent=Os08t0189500-01
Chr08	irgsp1_rep	CDS	5239370	5239926	.	+	2	Parent=Os08t0189500-01
Chr08	irgsp1_rep	three_prime_UTR	5239927	5240148	.	+	.	Parent=Os08t0189500-01
Chr08	irgsp1_rep	mRNA	5242497	5243656	.	+	.	ID=Os08t0189600-01;Name=Os08t0189600-01;Locus_id=Os08g0189600;RAP-DB Gene Symbol Synonym(s)=GLP8-7%2C OsGLP8-7%2C GER6%2C OsRGLP2%2C RGLP2;RAP-DB Gene Name Synonym(s)=GERMIN-LIKE PROTEIN 8-7%2C Germin-like protein 8-7%2C Germin-like protein 6%2C germin-like protein gene 2%2C Root GLP 2%2C root GLP2%2C root Germin-like protein 2;CGSNL Gene Symbol=GLP8-7;CGSNL Gene Name=GERMIN-LIKE PROTEIN 8-7;Oryzabase Gene Symbol Synonym(s)=OsGLP8-7%2C GER6%2C OsRGLP2%2C RGLP2;Oryzabase Gene Name Synonym(s)=Germin-like protein 8-7%2C Germin-like protein 6%2C germin-like protein gene 2%2C Root GLP 2%2C root GLP2%2C root Germin-like protein 2;Note=Germin-like protein 8-7%2C Disease resistance;Transcript_evidence=AK061029 (Genbank);ORF_evidence=Q6YZZ2 (UniProt);GO=Cellular Component: apoplast (GO:0048046),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),Germin%2C manganese binding site (IPR019780);NIAS_FLcDNA=006-204-G10;Manual Curation=May 29%2C 2009;Literature_PMID=19011003,11264412;Oryzabase=8242;Expression=AK061029;TENOR=Os08t0189600-01;KEGG=Os08t0189600-01
Chr08	irgsp1_rep	five_prime_UTR	5242497	5242597	.	+	.	Parent=Os08t0189600-01
Chr08	irgsp1_rep	CDS	5242598	5242718	.	+	0	Parent=Os08t0189600-01
Chr08	irgsp1_rep	CDS	5242897	5243453	.	+	2	Parent=Os08t0189600-01
Chr08	irgsp1_rep	three_prime_UTR	5243454	5243656	.	+	.	Parent=Os08t0189600-01
Chr08	irgsp1_rep	mRNA	5248666	5249832	.	+	.	ID=Os08t0189700-01;Name=Os08t0189700-01;Locus_id=Os08g0189700;RAP-DB Gene Symbol Synonym(s)=GLP8-8%2C OsGLP8-8;RAP-DB Gene Name Synonym(s)=GERMIN-LIKE PROTEIN 8-8%2C Germin-like protein 8-8;CGSNL Gene Symbol=GLP8-8;CGSNL Gene Name=GERMIN-LIKE PROTEIN 8-8;Oryzabase Gene Symbol Synonym(s)=OsGLP8-8;Oryzabase Gene Name Synonym(s)=Germin-like protein 8-8;Note=Germin-like protein 8-8%2C Disease resistance;Transcript_evidence=AK241043 (Genbank);ORF_evidence=Q6YZA1 (UniProt);GO=Cellular Component: apoplast (GO:0048046),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),Germin%2C manganese binding site (IPR019780);Manual Curation=May 26%2C 2009;Literature_PMID=19011003;Oryzabase=8243;TENOR=Os08t0189700-01
Chr08	irgsp1_rep	five_prime_UTR	5248666	5248789	.	+	.	Parent=Os08t0189700-01
Chr08	irgsp1_rep	CDS	5248790	5248907	.	+	0	Parent=Os08t0189700-01
Chr08	irgsp1_rep	CDS	5249098	5249654	.	+	2	Parent=Os08t0189700-01
Chr08	irgsp1_rep	three_prime_UTR	5249655	5249832	.	+	.	Parent=Os08t0189700-01
Chr08	irgsp1_rep	mRNA	5254364	5255230	.	+	.	ID=Os08t0189850-01;Name=Os08t0189850-01;Locus_id=Os08g0189850;RAP-DB Gene Symbol Synonym(s)=GLP8-9%2C OsGLP8-9;RAP-DB Gene Name Synonym(s)=GERMIN-LIKE PROTEIN 8-9%2C Germin-like protein 8-9;CGSNL Gene Symbol=GLP8-9;CGSNL Gene Name=GERMIN-LIKE PROTEIN 8-9;Oryzabase Gene Symbol Synonym(s)=OsGLP8-9;Oryzabase Gene Name Synonym(s)=Germin-like protein 8-9;Note=Germin-like protein 8-9%2C Disease resistance;Transcript_evidence=Inferred from literature;ORF_evidence=Q6YZ99 (UniProt);GO=Cellular Component: apoplast (GO:0048046),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),Germin%2C manganese binding site (IPR019780);Manual Curation=May 26%2C 2009;Literature_PMID=19011003;Oryzabase=8244;TENOR=Os08t0189850-00
Chr08	irgsp1_rep	CDS	5254364	5254481	.	+	0	Parent=Os08t0189850-01
Chr08	irgsp1_rep	CDS	5254674	5255230	.	+	2	Parent=Os08t0189850-01
Chr08	irgsp1_rep	mRNA	5260239	5261296	.	+	.	ID=Os08t0189900-01;Name=Os08t0189900-01;Locus_id=Os08g0189900;RAP-DB Gene Symbol Synonym(s)=GLP8-10%2C OsGLP8-10;RAP-DB Gene Name Synonym(s)=GERMIN-LIKE PROTEIN 8-10%2C Germin-like protein 8-10;CGSNL Gene Symbol=GLP8-10;CGSNL Gene Name=GERMIN-LIKE PROTEIN 8-10;Oryzabase Gene Symbol Synonym(s)=OsGLP8-10%2C OsRGLP2%2C RGLP2;Oryzabase Gene Name Synonym(s)=Germin-like protein 8-10;Note=Germin-like protein 8-10%2C Disease resistance;Transcript_evidence=AF141879 (Genbank);ORF_evidence=Q6YZ97 (UniProt);GO=Cellular Component: apoplast (GO:0048046),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),Germin%2C manganese binding site (IPR019780);Manual Curation=May 29%2C 2009;Literature_PMID=19011003;Oryzabase=10289;Expression=AF141879;TENOR=Os08t0189900-00;KEGG=Os08t0189900-00
Chr08	irgsp1_rep	five_prime_UTR	5260239	5260263	.	+	.	Parent=Os08t0189900-01
Chr08	irgsp1_rep	CDS	5260264	5260381	.	+	0	Parent=Os08t0189900-01
Chr08	irgsp1_rep	CDS	5260573	5261129	.	+	2	Parent=Os08t0189900-01
Chr08	irgsp1_rep	three_prime_UTR	5261130	5261296	.	+	.	Parent=Os08t0189900-01
Chr08	irgsp1_rep	mRNA	5264245	5265340	.	+	.	ID=Os08t0190100-01;Name=Os08t0190100-01;Locus_id=Os08g0190100;RAP-DB Gene Symbol Synonym(s)=GLP8-11%2C OsGLP8-11;RAP-DB Gene Name Synonym(s)=GERMIN-LIKE PROTEIN 8-11%2C Germin-like protein 8-11;CGSNL Gene Symbol=GLP8-11;CGSNL Gene Name=GERMIN-LIKE PROTEIN 8-11;Oryzabase Gene Symbol Synonym(s)=OsGLP8-11%2C RGLP1%2C OsRGLP1;Oryzabase Gene Name Synonym(s)=Germin-like protein 8-11;Note=Germin-like protein 8-11%2C Disease resistance;Transcript_evidence=AF141878 (Genbank);ORF_evidence=Q6YZY5 (UniProt);GO=Cellular Component: apoplast (GO:0048046),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),Germin%2C manganese binding site (IPR019780);Manual Curation=May 29%2C 2009;Literature_PMID=19011003,11264412;Oryzabase=8237;TENOR=Os08t0190100-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	5264245	5264316	.	+	.	Parent=Os08t0190100-01
Chr08	irgsp1_rep	CDS	5264317	5264434	.	+	0	Parent=Os08t0190100-01
Chr08	irgsp1_rep	CDS	5264597	5265153	.	+	2	Parent=Os08t0190100-01
Chr08	irgsp1_rep	three_prime_UTR	5265154	5265340	.	+	.	Parent=Os08t0190100-01
Chr08	irgsp1_rep	mRNA	5268917	5273165	.	-	.	ID=Os08t0190200-00;Name=Os08t0190200-00;Locus_id=Os08g0190200;Note=Similar to cDNA clone:J033051E20%2C full insert sequence.;Transcript_evidence=BT041159 (DDBJ);ORF_evidence=Q6YZ94 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);TENOR=Os08t0190200-00;KEGG=Os08t0190200-00
Chr08	irgsp1_rep	five_prime_UTR	5273077	5273165	.	-	.	Parent=Os08t0190200-00
Chr08	irgsp1_rep	CDS	5272693	5273076	.	-	0	Parent=Os08t0190200-00
Chr08	irgsp1_rep	CDS	5271610	5272069	.	-	0	Parent=Os08t0190200-00
Chr08	irgsp1_rep	CDS	5269607	5269656	.	-	2	Parent=Os08t0190200-00
Chr08	irgsp1_rep	CDS	5269394	5269524	.	-	0	Parent=Os08t0190200-00
Chr08	irgsp1_rep	CDS	5269194	5269296	.	-	1	Parent=Os08t0190200-00
Chr08	irgsp1_rep	CDS	5268917	5269117	.	-	0	Parent=Os08t0190200-00
Chr08	irgsp1_rep	mRNA	5269409	5272023	.	+	.	ID=Os08t0190225-00;Name=Os08t0190225-00;Locus_id=Os08g0190225;Note=Hypothetical protein.;Transcript_evidence=BT009377 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0190225-00
Chr08	irgsp1_rep	five_prime_UTR	5269409	5269552	.	+	.	Parent=Os08t0190225-00
Chr08	irgsp1_rep	five_prime_UTR	5271592	5271805	.	+	.	Parent=Os08t0190225-00
Chr08	irgsp1_rep	CDS	5271806	5272023	.	+	0	Parent=Os08t0190225-00
Chr08	irgsp1_rep	mRNA	5274603	5277357	.	+	.	ID=Os08t0190250-01;Name=Os08t0190250-01;Locus_id=Os08g0190250;Note=Hypothetical gene.;Transcript_evidence=AK287733 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065141C21;TENOR=Os08t0190250-01
Chr08	irgsp1_rep	five_prime_UTR	5274603	5276486	.	+	.	Parent=Os08t0190250-01
Chr08	irgsp1_rep	CDS	5276487	5277357	.	+	0	Parent=Os08t0190250-01
Chr08	irgsp1_rep	mRNA	5274970	5279294	.	-	.	ID=Os08t0190300-00;Name=Os08t0190300-00;Locus_id=Os08g0190300;Note=Disease resistance protein domain containing protein.;Transcript_evidence=BT085454 (DDBJ);ORF_evidence=NP_001061166.1 (RefSeq);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os08t0190300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	5278804	5279294	.	-	0	Parent=Os08t0190300-00
Chr08	irgsp1_rep	CDS	5276703	5277456	.	-	1	Parent=Os08t0190300-00
Chr08	irgsp1_rep	CDS	5274970	5276601	.	-	0	Parent=Os08t0190300-00
Chr08	irgsp1_rep	mRNA	5314677	5315177	.	+	.	ID=Os08t0190500-00;Name=Os08t0190500-00;Locus_id=Os08g0190500;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001061167.1 (RefSeq);TENOR=Os08t0190500-00
Chr08	irgsp1_rep	CDS	5314677	5315177	.	+	0	Parent=Os08t0190500-00
Chr08	irgsp1_rep	mRNA	5315463	5317814	.	+	.	ID=Os08t0190700-00;Name=Os08t0190700-00;Locus_id=Os08g0190700;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001061167.1 (RefSeq);TENOR=Os08t0190700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	5315463	5315543	.	+	0	Parent=Os08t0190700-00
Chr08	irgsp1_rep	CDS	5316032	5316157	.	+	0	Parent=Os08t0190700-00
Chr08	irgsp1_rep	CDS	5316240	5317814	.	+	0	Parent=Os08t0190700-00
Chr08	irgsp1_rep	mRNA	5318646	5320835	.	-	.	ID=Os08t0190800-01;Name=Os08t0190800-01;Locus_id=Os08g0190800;Note=Postsynaptic protein CRIPT.;Transcript_evidence=AK241589 (DDBJ%2C Best hit);ORF_evidence=NP_001150297.1 (RefSeq);InterPro=PDZ-binding protein%2C CRIPT (IPR019367);NIAS_FLcDNA=J065182K15;TENOR=Os08t0190800-01;KEGG=Os08t0190800-01
Chr08	irgsp1_rep	five_prime_UTR	5320783	5320835	.	-	.	Parent=Os08t0190800-01
Chr08	irgsp1_rep	CDS	5320767	5320782	.	-	0	Parent=Os08t0190800-01
Chr08	irgsp1_rep	CDS	5320472	5320589	.	-	2	Parent=Os08t0190800-01
Chr08	irgsp1_rep	CDS	5319170	5319261	.	-	1	Parent=Os08t0190800-01
Chr08	irgsp1_rep	CDS	5318902	5318966	.	-	2	Parent=Os08t0190800-01
Chr08	irgsp1_rep	three_prime_UTR	5318646	5318901	.	-	.	Parent=Os08t0190800-01
Chr08	irgsp1_rep	mRNA	5318774	5320582	.	+	.	ID=Os08t0190901-00;Name=Os08t0190901-00;Locus_id=Os08g0190901;Note=Non-protein coding transcript.;Transcript_evidence=BT016949 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0190901-00
Chr08	irgsp1_rep	exon	5318774	5318964	.	+	.	Parent=Os08t0190901-00
Chr08	irgsp1_rep	exon	5319168	5319255	.	+	.	Parent=Os08t0190901-00
Chr08	irgsp1_rep	exon	5320464	5320582	.	+	.	Parent=Os08t0190901-00
Chr08	irgsp1_rep	mRNA	5322769	5325114	.	+	.	ID=Os08t0191000-01;Name=Os08t0191000-01;Locus_id=Os08g0191000;Oryzabase Gene Symbol Synonym(s)=OsPILS2%2C PILS2;Oryzabase Gene Name Synonym(s)=PIN likes 2;Note=Auxin efflux carrier domain containing protein.;Transcript_evidence=AK065037 (DDBJ%2C Best hit);ORF_evidence=B6T254 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Auxin efflux carrier (IPR004776);NIAS_FLcDNA=J013001H10;Oryzabase=19846;Expression=AK065037;TENOR=Os08t0191000-01;KEGG=Os08t0191000-01
Chr08	irgsp1_rep	five_prime_UTR	5322769	5322928	.	+	.	Parent=Os08t0191000-01
Chr08	irgsp1_rep	five_prime_UTR	5323267	5323422	.	+	.	Parent=Os08t0191000-01
Chr08	irgsp1_rep	CDS	5323423	5324790	.	+	0	Parent=Os08t0191000-01
Chr08	irgsp1_rep	three_prime_UTR	5324791	5325114	.	+	.	Parent=Os08t0191000-01
Chr08	irgsp1_rep	mRNA	5327664	5334951	.	-	.	ID=Os08t0191100-01;Name=Os08t0191100-01;Locus_id=Os08g0191100;RAP-DB Gene Symbol Synonym(s)=OsACO2%2C OsACO1;RAP-DB Gene Name Synonym(s)=aconitase 2%2C aconitase 1;Oryzabase Gene Symbol Synonym(s)=OsACO1%2C ACO1;Oryzabase Gene Name Synonym(s)=aconitase 1;Note=Aconitase%2C Response to heat stress;Transcript_evidence=AK059070 (truncated),Inferred from literature;ORF_evidence=Q6YZX6;InterPro=Aconitase%2C iron-sulfur domain (IPR036008),Aconitase/3-isopropylmalate dehydratase large subunit%2C alpha/beta/alpha%2C subdomain 1/3 (IPR015931),Aconitase/3-isopropylmalate dehydratase%2C swivel (IPR015928),Aconitase/Iron-responsive element-binding protein 2 (IPR006249),Aconitase/3-isopropylmalate dehydratase large subunit%2C alpha/beta/alpha domain (IPR001030),Aconitase A/isopropylmalate dehydratase small subunit%2C swivel domain (IPR000573),Aconitase family%2C 4Fe-4S cluster binding site (IPR018136);NIAS_FLcDNA=001-021-H03 (truncated);Manual Curation=September 25%2C 2020;Literature_PMID=32909184,25711810;Oryzabase=19292;Expression=AK059070;TENOR=Os08t0191100-01;KEGG=Os08t0191100-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	5334890	5334951	.	-	.	Parent=Os08t0191100-01
Chr08	irgsp1_rep	CDS	5334607	5334889	.	-	0	Parent=Os08t0191100-01
Chr08	irgsp1_rep	CDS	5333349	5333453	.	-	2	Parent=Os08t0191100-01
Chr08	irgsp1_rep	CDS	5332781	5332941	.	-	2	Parent=Os08t0191100-01
Chr08	irgsp1_rep	CDS	5332607	5332699	.	-	0	Parent=Os08t0191100-01
Chr08	irgsp1_rep	CDS	5332237	5332422	.	-	0	Parent=Os08t0191100-01
Chr08	irgsp1_rep	CDS	5331996	5332157	.	-	0	Parent=Os08t0191100-01
Chr08	irgsp1_rep	CDS	5331552	5331696	.	-	0	Parent=Os08t0191100-01
Chr08	irgsp1_rep	CDS	5331324	5331466	.	-	2	Parent=Os08t0191100-01
Chr08	irgsp1_rep	CDS	5330849	5330905	.	-	0	Parent=Os08t0191100-01
Chr08	irgsp1_rep	CDS	5330683	5330762	.	-	0	Parent=Os08t0191100-01
Chr08	irgsp1_rep	CDS	5330513	5330588	.	-	1	Parent=Os08t0191100-01
Chr08	irgsp1_rep	CDS	5330233	5330418	.	-	0	Parent=Os08t0191100-01
Chr08	irgsp1_rep	CDS	5330078	5330145	.	-	0	Parent=Os08t0191100-01
Chr08	irgsp1_rep	CDS	5329861	5329979	.	-	1	Parent=Os08t0191100-01
Chr08	irgsp1_rep	CDS	5329650	5329771	.	-	2	Parent=Os08t0191100-01
Chr08	irgsp1_rep	CDS	5329413	5329511	.	-	0	Parent=Os08t0191100-01
Chr08	irgsp1_rep	CDS	5328807	5329286	.	-	0	Parent=Os08t0191100-01
Chr08	irgsp1_rep	CDS	5328623	5328721	.	-	0	Parent=Os08t0191100-01
Chr08	irgsp1_rep	CDS	5328294	5328536	.	-	0	Parent=Os08t0191100-01
Chr08	irgsp1_rep	CDS	5328095	5328163	.	-	0	Parent=Os08t0191100-01
Chr08	irgsp1_rep	three_prime_UTR	5327664	5328094	.	-	.	Parent=Os08t0191100-01
Chr08	irgsp1_rep	mRNA	5328907	5329776	.	+	.	ID=Os08t0191150-00;Name=Os08t0191150-00;Locus_id=Os08g0191150;Note=Non-protein coding transcript.;Transcript_evidence=EU944133 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0191150-00
Chr08	irgsp1_rep	exon	5328907	5329154	.	+	.	Parent=Os08t0191150-00
Chr08	irgsp1_rep	exon	5329404	5329776	.	+	.	Parent=Os08t0191150-00
Chr08	irgsp1_rep	mRNA	5341449	5345391	.	+	.	ID=Os08t0191200-01;Name=Os08t0191200-01;Locus_id=Os08g0191200;RAP-DB Gene Symbol Synonym(s)=VAL1%2C GARS;RAP-DB Gene Name Synonym(s)=VIRESCENT-ALBINO LEAF 1%2C glycinamide ribonucleotide synthetase;CGSNL Gene Symbol=VAL1;CGSNL Gene Name=VIRESCENT-ALBINO LEAF 1;Oryzabase Gene Symbol Synonym(s)=OsVAL1%2C PurD%2C OsPurD;Note=Phosphoribosylamine-glycine ligase (PurD)%2C Glycinamide ribonucleotide synthetase%2C Regulation of chloroplast development%2C chlorophyll metabolism%2C and cell division during leaf development;Transcript_evidence=AK067808,AK106101;ORF_evidence=Q6YZX5;GO=Biological Process: purine nucleobase biosynthetic process (GO:0009113),Molecular Function: phosphoribosylamine-glycine ligase activity (GO:0004637),Molecular Function: ATP binding (GO:0005524),Molecular Function: metal ion binding (GO:0046872);InterPro=Pre-ATP-grasp domain superfamily (IPR016185),ATP-grasp fold%2C subdomain 1 (IPR013815),Rudiment single hybrid motif (IPR011054),Phosphoribosylglycinamide synthetase%2C C-domain superfamily (IPR037123),Phosphoribosylglycinamide synthetase (IPR000115),Phosphoribosylglycinamide synthetase%2C N-terminal (IPR020562),ATP-grasp fold (IPR011761),Phosphoribosylglycinamide synthetase%2C ATP-grasp (A) domain (IPR020561),Phosphoribosylglycinamide synthetase%2C C-domain (IPR020560),Phosphoribosylglycinamide synthetase%2C conserved site (IPR020559);NIAS_FLcDNA=J013119I22,001-207-C06;Manual Curation=December 7%2C 2018;Literature_PMID=30499032,30102358;Oryzabase=22586;TENOR=Os08t0191200-01;Subcellular location=chloroplast (GO:0009507)
Chr08	irgsp1_rep	five_prime_UTR	5341449	5341771	.	+	.	Parent=Os08t0191200-01
Chr08	irgsp1_rep	five_prime_UTR	5341856	5341885	.	+	.	Parent=Os08t0191200-01
Chr08	irgsp1_rep	CDS	5341886	5342150	.	+	0	Parent=Os08t0191200-01
Chr08	irgsp1_rep	CDS	5342342	5342715	.	+	2	Parent=Os08t0191200-01
Chr08	irgsp1_rep	CDS	5343198	5343728	.	+	0	Parent=Os08t0191200-01
Chr08	irgsp1_rep	CDS	5344644	5345057	.	+	0	Parent=Os08t0191200-01
Chr08	irgsp1_rep	three_prime_UTR	5345058	5345391	.	+	.	Parent=Os08t0191200-01
Chr08	irgsp1_rep	mRNA	5344641	5345170	.	-	.	ID=Os08t0191250-00;Name=Os08t0191250-00;Locus_id=Os08g0191250;Note=Hypothetical gene.;Transcript_evidence=BT016971 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0191250-00;KEGG=Os08t0191250-00
Chr08	irgsp1_rep	five_prime_UTR	5345097	5345170	.	-	.	Parent=Os08t0191250-00
Chr08	irgsp1_rep	CDS	5344731	5345096	.	-	0	Parent=Os08t0191250-00
Chr08	irgsp1_rep	three_prime_UTR	5344641	5344730	.	-	.	Parent=Os08t0191250-00
Chr08	irgsp1_rep	mRNA	5345885	5346658	.	-	.	ID=Os08t0191300-00;Name=Os08t0191300-00;Locus_id=Os08g0191300;Oryzabase Gene Symbol Synonym(s)=OsFbox408%2C Os_F0490;Oryzabase Gene Name Synonym(s)=F-box protein 408;Note=Conserved hypothetical protein.;Transcript_evidence=EU947520 (DDBJ);ORF_evidence=Q6YZX4 (UniProt);Oryzabase=17181;TENOR=Os08t0191300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	5345885	5346658	.	-	0	Parent=Os08t0191300-00
Chr08	irgsp1_rep	mRNA	5349923	5350343	.	+	.	ID=Os08t0191400-01;Name=Os08t0191400-01;Locus_id=Os08g0191400;Note=Hypothetical gene.;Transcript_evidence=AK058834 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-004-B10;Expression=AK058834;TENOR=Os08t0191400-01;KEGG=Os08t0191400-01
Chr08	irgsp1_rep	CDS	5349923	5350207	.	+	0	Parent=Os08t0191400-01
Chr08	irgsp1_rep	three_prime_UTR	5350208	5350343	.	+	.	Parent=Os08t0191400-01
Chr08	irgsp1_rep	mRNA	5353697	5363276	.	+	.	ID=Os08t0191433-01;Name=Os08t0191433-01;Locus_id=Os08g0191433;RAP-DB Gene Symbol Synonym(s)=SSIIIA%2C OsSSIIIa%2C SSIII-2%2C SS3A%2C OsSSSIIIa;RAP-DB Gene Name Synonym(s)=SOLUBLE STARCH SYNTHASE IIIA%2C SOLUBLE STARCH SYNTHASE III-2;CGSNL Gene Symbol=FLO5;CGSNL Gene Name=FLOURY ENDOSPERM 5;Oryzabase Gene Symbol Synonym(s)=OsSSIIIa%2C SSIII-2%2C OsSSIII-2%2C OsSS3A%2C SS3A%2C SS3a%2C OsSSSIIIa%2C SSIIIa%2C Flo5;Oryzabase Gene Name Synonym(s)=SOLUBLE STARCH SYNTHASE III-2%2C SOLUBLE STARCH SYNTHASE IIIA%2C floury endosperm 5;Note=Starch synthase%2C Starch biosynthesis;Transcript_evidence=AY100469 (indica);ORF_evidence=Q8L8G9;GO=Biological Process: biosynthetic process (GO:0009058),Biological Process: glucan biosynthetic process (GO:0009250),Molecular Function: starch synthase activity (GO:0009011),Molecular Function: starch binding (GO:2001070);InterPro=Glycogen/starch synthase%2C ADP-glucose type (IPR011835),Carbohydrate binding module family 25 (IPR005085),Starch synthase%2C catalytic domain (IPR013534),Glycosyl transferase%2C family 1 (IPR001296);Manual Curation=February 22%2C 2010;Literature_PMID=15232694,17586688,21595523;Oryzabase=6623;TENOR=Os08t0191433-00
Chr08	irgsp1_rep	five_prime_UTR	5353697	5353840	.	+	.	Parent=Os08t0191433-01
Chr08	irgsp1_rep	CDS	5353841	5356535	.	+	0	Parent=Os08t0191433-01
Chr08	irgsp1_rep	CDS	5356719	5356933	.	+	2	Parent=Os08t0191433-01
Chr08	irgsp1_rep	CDS	5357467	5357737	.	+	0	Parent=Os08t0191433-01
Chr08	irgsp1_rep	CDS	5358330	5358505	.	+	2	Parent=Os08t0191433-01
Chr08	irgsp1_rep	CDS	5358631	5358738	.	+	0	Parent=Os08t0191433-01
Chr08	irgsp1_rep	CDS	5359165	5359274	.	+	0	Parent=Os08t0191433-01
Chr08	irgsp1_rep	CDS	5360635	5360737	.	+	1	Parent=Os08t0191433-01
Chr08	irgsp1_rep	CDS	5361002	5361172	.	+	0	Parent=Os08t0191433-01
Chr08	irgsp1_rep	CDS	5361296	5361424	.	+	0	Parent=Os08t0191433-01
Chr08	irgsp1_rep	CDS	5361666	5361848	.	+	0	Parent=Os08t0191433-01
Chr08	irgsp1_rep	CDS	5361956	5362087	.	+	0	Parent=Os08t0191433-01
Chr08	irgsp1_rep	CDS	5362167	5362278	.	+	0	Parent=Os08t0191433-01
Chr08	irgsp1_rep	CDS	5362444	5362567	.	+	2	Parent=Os08t0191433-01
Chr08	irgsp1_rep	CDS	5362796	5362928	.	+	1	Parent=Os08t0191433-01
Chr08	irgsp1_rep	three_prime_UTR	5362929	5363276	.	+	.	Parent=Os08t0191433-01
Chr08	irgsp1_rep	mRNA	5352105	5362928	.	+	.	ID=Os08t0191433-02;Name=Os08t0191433-02;Locus_id=Os08g0191433;RAP-DB Gene Symbol Synonym(s)=SSIIIa;RAP-DB Gene Name Synonym(s)=soluble starch synthase IIIa;CGSNL Gene Symbol=FLO5;CGSNL Gene Name=FLOURY ENDOSPERM 5;Oryzabase Gene Symbol Synonym(s)=OsSSIIIa%2C SSIII-2%2C OsSSIII-2%2C OsSS3A%2C SS3A%2C SS3a%2C OsSSSIIIa%2C SSIIIa%2C Flo5;Oryzabase Gene Name Synonym(s)=SOLUBLE STARCH SYNTHASE III-2%2C SOLUBLE STARCH SYNTHASE IIIA%2C floury endosperm 5;Note=Starch synthase%2C Starch biosynthesis%2C Amylopectin synthesis;Transcript_evidence=Inferred from literature;ORF_evidence=A0A0P0XCU3-2;GO=Molecular Function: glycogen (starch) synthase activity (GO:0004373),Molecular Function: starch binding (GO:2001070);InterPro=Immunoglobulin-like fold (IPR013783),Bacterial/plant glycogen synthase (IPR011835),Carbohydrate binding module family 25 (IPR005085),Starch synthase%2C catalytic domain (IPR013534),Glycosyl transferase%2C family 1 (IPR001296);Manual Curation=May 9%2C 2019;Literature_PMID=28088172,27791174,21730357;Oryzabase=6623
Chr08	irgsp1_rep	CDS	5352105	5352206	.	+	0	Parent=Os08t0191433-02
Chr08	irgsp1_rep	CDS	5353152	5353215	.	+	0	Parent=Os08t0191433-02
Chr08	irgsp1_rep	CDS	5353302	5356535	.	+	2	Parent=Os08t0191433-02
Chr08	irgsp1_rep	CDS	5356719	5356933	.	+	2	Parent=Os08t0191433-02
Chr08	irgsp1_rep	CDS	5357467	5357737	.	+	0	Parent=Os08t0191433-02
Chr08	irgsp1_rep	CDS	5358330	5358505	.	+	2	Parent=Os08t0191433-02
Chr08	irgsp1_rep	CDS	5358631	5358738	.	+	0	Parent=Os08t0191433-02
Chr08	irgsp1_rep	CDS	5359165	5359274	.	+	0	Parent=Os08t0191433-02
Chr08	irgsp1_rep	CDS	5360635	5360737	.	+	1	Parent=Os08t0191433-02
Chr08	irgsp1_rep	CDS	5361002	5361172	.	+	0	Parent=Os08t0191433-02
Chr08	irgsp1_rep	CDS	5361296	5361424	.	+	0	Parent=Os08t0191433-02
Chr08	irgsp1_rep	CDS	5361666	5361848	.	+	0	Parent=Os08t0191433-02
Chr08	irgsp1_rep	CDS	5361956	5362087	.	+	0	Parent=Os08t0191433-02
Chr08	irgsp1_rep	CDS	5362167	5362278	.	+	0	Parent=Os08t0191433-02
Chr08	irgsp1_rep	CDS	5362444	5362567	.	+	2	Parent=Os08t0191433-02
Chr08	irgsp1_rep	CDS	5362796	5362928	.	+	1	Parent=Os08t0191433-02
Chr08	irgsp1_rep	mRNA	5361078	5362944	.	-	.	ID=Os08t0191466-00;Name=Os08t0191466-00;Locus_id=Os08g0191466;Note=Hypothetical gene.;Transcript_evidence=BT017185 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0191466-00;KEGG=Os08t0191466-00
Chr08	irgsp1_rep	five_prime_UTR	5362786	5362944	.	-	.	Parent=Os08t0191466-00
Chr08	irgsp1_rep	five_prime_UTR	5362418	5362559	.	-	.	Parent=Os08t0191466-00
Chr08	irgsp1_rep	five_prime_UTR	5362165	5362257	.	-	.	Parent=Os08t0191466-00
Chr08	irgsp1_rep	five_prime_UTR	5361954	5362084	.	-	.	Parent=Os08t0191466-00
Chr08	irgsp1_rep	five_prime_UTR	5361825	5361846	.	-	.	Parent=Os08t0191466-00
Chr08	irgsp1_rep	CDS	5361667	5361824	.	-	0	Parent=Os08t0191466-00
Chr08	irgsp1_rep	CDS	5361311	5361425	.	-	1	Parent=Os08t0191466-00
Chr08	irgsp1_rep	three_prime_UTR	5361305	5361310	.	-	.	Parent=Os08t0191466-00
Chr08	irgsp1_rep	three_prime_UTR	5361078	5361180	.	-	.	Parent=Os08t0191466-00
Chr08	irgsp1_rep	mRNA	5364394	5366465	.	+	.	ID=Os08t0191600-01;Name=Os08t0191600-01;Locus_id=Os08g0191600;RAP-DB Gene Symbol Synonym(s)=OsATG8c;RAP-DB Gene Name Synonym(s)=autophagy 8c;CGSNL Gene Symbol=ATG8C;CGSNL Gene Name=AUTOPHAGY ASSOCIATED GENE 8C;Oryzabase Gene Symbol Synonym(s)=OsATG8c;Oryzabase Gene Name Synonym(s)=autophagy 8c%2C OsAuTophaGy8c;Note=Core autophagy gene%2C Nitrogen use efficiency and yield;Transcript_evidence=AK121169,AK062573;ORF_evidence=Q6Z1D5;InterPro=Ubiquitin-like domain superfamily (IPR029071),Autophagy protein Atg8 ubiquitin-like (IPR004241);NIAS_FLcDNA=J023080P16,001-046-G05;Manual Curation=October 15%2C 2019;Literature_PMID=31597279;Oryzabase=9646;Expression=AK121169;TENOR=Os08t0191600-01;KEGG=Os08t0191600-01;Subcellular location=cytoplasm (GO:0005737), autophagic structure
Chr08	irgsp1_rep	five_prime_UTR	5364394	5364478	.	+	.	Parent=Os08t0191600-01
Chr08	irgsp1_rep	five_prime_UTR	5364662	5364700	.	+	.	Parent=Os08t0191600-01
Chr08	irgsp1_rep	CDS	5364701	5364737	.	+	0	Parent=Os08t0191600-01
Chr08	irgsp1_rep	CDS	5365239	5365294	.	+	2	Parent=Os08t0191600-01
Chr08	irgsp1_rep	CDS	5365390	5365442	.	+	0	Parent=Os08t0191600-01
Chr08	irgsp1_rep	CDS	5365907	5366025	.	+	1	Parent=Os08t0191600-01
Chr08	irgsp1_rep	CDS	5366127	5366224	.	+	2	Parent=Os08t0191600-01
Chr08	irgsp1_rep	three_prime_UTR	5366225	5366465	.	+	.	Parent=Os08t0191600-01
Chr08	irgsp1_rep	mRNA	5371810	5375320	.	+	.	ID=Os08t0191650-01;Name=Os08t0191650-01;Locus_id=Os08g0191650;Note=Hypothetical gene.;Transcript_evidence=AK288198 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090008D19;TENOR=Os08t0191650-01;KEGG=Os08t0191650-01
Chr08	irgsp1_rep	five_prime_UTR	5371810	5373493	.	+	.	Parent=Os08t0191650-01
Chr08	irgsp1_rep	CDS	5373494	5373796	.	+	0	Parent=Os08t0191650-01
Chr08	irgsp1_rep	three_prime_UTR	5373797	5375320	.	+	.	Parent=Os08t0191650-01
Chr08	irgsp1_rep	mRNA	5373362	5377125	.	-	.	ID=Os08t0191700-01;Name=Os08t0191700-01;Locus_id=Os08g0191700;RAP-DB Gene Symbol Synonym(s)=GLYI-11%2C OsGLYI11%2C GLYI11%2C OsGLYI11.2%2C OsGLYI-11.2%2C Glb33;RAP-DB Gene Name Synonym(s)=GLYOXALASE I-11%2C glyoxalase I-11%2C 33-kDa Allergen;CGSNL Gene Symbol=GLYI-11;CGSNL Gene Name=GLYOXALASE I-11;Oryzabase Gene Symbol Synonym(s)=OsGLYI11%2C GLYI11%2C OsGLYII1.1%2C OsGLYI11.2%2C OsGLYI11.3%2C OsGLYI-11.2%2C Glb33;Oryzabase Gene Name Synonym(s)=glyoxalase I-11%2C 33-kDa Allergen;Note=Glyoxalase I%2C Abiotic stress response;Transcript_evidence=AK066092,AK103694;ORF_evidence=Q948T6;GO=Molecular Function: lactoylglutathione lyase activity (GO:0004462),Molecular Function: metal ion binding (GO:0046872);InterPro=Glyoxalase I (IPR004361),Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (IPR029068),Glyoxalase/fosfomycin resistance/dioxygenase domain (IPR004360),Glyoxalase I%2C conserved site (IPR018146);NIAS_FLcDNA=J013055G04,J033136J17;Manual Curation=January 26%2C 2015;Literature_PMID=24661284,21213008;Oryzabase=9361;TENOR=Os08t0191700-01
Chr08	irgsp1_rep	five_prime_UTR	5377004	5377125	.	-	.	Parent=Os08t0191700-01
Chr08	irgsp1_rep	five_prime_UTR	5376138	5376139	.	-	.	Parent=Os08t0191700-01
Chr08	irgsp1_rep	CDS	5376019	5376137	.	-	0	Parent=Os08t0191700-01
Chr08	irgsp1_rep	CDS	5375822	5375946	.	-	1	Parent=Os08t0191700-01
Chr08	irgsp1_rep	CDS	5375539	5375603	.	-	2	Parent=Os08t0191700-01
Chr08	irgsp1_rep	CDS	5375212	5375427	.	-	0	Parent=Os08t0191700-01
Chr08	irgsp1_rep	CDS	5375033	5375080	.	-	0	Parent=Os08t0191700-01
Chr08	irgsp1_rep	CDS	5374785	5374892	.	-	0	Parent=Os08t0191700-01
Chr08	irgsp1_rep	CDS	5374552	5374704	.	-	0	Parent=Os08t0191700-01
Chr08	irgsp1_rep	CDS	5373615	5373656	.	-	0	Parent=Os08t0191700-01
Chr08	irgsp1_rep	three_prime_UTR	5373362	5373614	.	-	.	Parent=Os08t0191700-01
Chr08	irgsp1_rep	mRNA	5373366	5377078	.	-	.	ID=Os08t0191700-02;Name=Os08t0191700-02;Locus_id=Os08g0191700;RAP-DB Gene Symbol Synonym(s)=GLYI-11%2C OsGLYI11.3%2C OsGLYI11%2C GLYI11;RAP-DB Gene Name Synonym(s)=GLYOXALASE I-11%2C glyoxalase I-11;CGSNL Gene Symbol=GLYI-11;CGSNL Gene Name=GLYOXALASE I-11;Oryzabase Gene Symbol Synonym(s)=OsGLYI11%2C GLYI11%2C OsGLYII1.1%2C OsGLYI11.2%2C OsGLYI11.3%2C OsGLYI-11.2%2C Glb33;Oryzabase Gene Name Synonym(s)=glyoxalase I-11%2C 33-kDa Allergen;Note=Glyoxalase I%2C Splicing variant%2C Stress tolerance;Transcript_evidence=AK121126;ORF_evidence=B7F6T2;GO=Molecular Function: lactoylglutathione lyase activity (GO:0004462),Molecular Function: metal ion binding (GO:0046872);InterPro=Glyoxalase I (IPR004361),Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (IPR029068),Glyoxalase/fosfomycin resistance/dioxygenase domain (IPR004360);NIAS_FLcDNA=J023075A08;Manual Curation=January 26%2C 2015;Literature_PMID=24661284,21213008;Oryzabase=9361;TENOR=Os08t0191700-02;KEGG=Os08t0191700-02 (EC:4.4.1.5);B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	5376138	5377078	.	-	.	Parent=Os08t0191700-02
Chr08	irgsp1_rep	CDS	5376019	5376137	.	-	0	Parent=Os08t0191700-02
Chr08	irgsp1_rep	CDS	5375822	5375946	.	-	1	Parent=Os08t0191700-02
Chr08	irgsp1_rep	CDS	5375539	5375603	.	-	2	Parent=Os08t0191700-02
Chr08	irgsp1_rep	CDS	5375191	5375427	.	-	0	Parent=Os08t0191700-02
Chr08	irgsp1_rep	three_prime_UTR	5373366	5375190	.	-	.	Parent=Os08t0191700-02
Chr08	irgsp1_rep	mRNA	5373383	5377078	.	-	.	ID=Os08t0191700-03;Name=Os08t0191700-03;Locus_id=Os08g0191700;CGSNL Gene Symbol=GLYI-11;CGSNL Gene Name=GLYOXALASE I-11;Oryzabase Gene Symbol Synonym(s)=OsGLYI11%2C GLYI11%2C OsGLYII1.1%2C OsGLYI11.2%2C OsGLYI11.3%2C OsGLYI-11.2%2C Glb33;Oryzabase Gene Name Synonym(s)=glyoxalase I-11%2C 33-kDa Allergen;Note=Similar to Lactoylglutathione lyase (EC 4.4.1.5) (Methylglyoxalase) (Aldoketomutase) (Glyoxalase I) (Glx I) (Ketone-aldehyde mutase) (S-D- lactoylglutathione methylglyoxal lyase).;Transcript_evidence=AK104866 (DDBJ%2C Best hit);ORF_evidence=Q948T6 (UniProt);GO=Molecular Function: lactoylglutathione lyase activity (GO:0004462),Molecular Function: metal ion binding (GO:0046872);InterPro=Glyoxalase/fosfomycin resistance/dioxygenase (IPR004360),Glyoxalase I (IPR004361),Glyoxalase I%2C conserved site (IPR018146);NIAS_FLcDNA=001-043-H02;Oryzabase=9361;TENOR=Os08t0191700-03
Chr08	irgsp1_rep	five_prime_UTR	5377004	5377078	.	-	.	Parent=Os08t0191700-03
Chr08	irgsp1_rep	five_prime_UTR	5376138	5376139	.	-	.	Parent=Os08t0191700-03
Chr08	irgsp1_rep	CDS	5376019	5376137	.	-	0	Parent=Os08t0191700-03
Chr08	irgsp1_rep	CDS	5375822	5375946	.	-	1	Parent=Os08t0191700-03
Chr08	irgsp1_rep	CDS	5375539	5375603	.	-	2	Parent=Os08t0191700-03
Chr08	irgsp1_rep	CDS	5375212	5375427	.	-	0	Parent=Os08t0191700-03
Chr08	irgsp1_rep	CDS	5375033	5375080	.	-	0	Parent=Os08t0191700-03
Chr08	irgsp1_rep	CDS	5374785	5374892	.	-	0	Parent=Os08t0191700-03
Chr08	irgsp1_rep	CDS	5374552	5374704	.	-	0	Parent=Os08t0191700-03
Chr08	irgsp1_rep	CDS	5373615	5373656	.	-	0	Parent=Os08t0191700-03
Chr08	irgsp1_rep	three_prime_UTR	5373383	5373614	.	-	.	Parent=Os08t0191700-03
Chr08	irgsp1_rep	mRNA	5373383	5377078	.	-	.	ID=Os08t0191700-04;Name=Os08t0191700-04;Locus_id=Os08g0191700;RAP-DB Gene Symbol Synonym(s)=GLYI-11%2C OsGLYI11.1%2C OsGLYI11%2C GLYI11;RAP-DB Gene Name Synonym(s)=GLYOXALASE I-11%2C glyoxalase I-11;CGSNL Gene Symbol=GLYI-11;CGSNL Gene Name=GLYOXALASE I-11;Oryzabase Gene Symbol Synonym(s)=OsGLYI11%2C GLYI11%2C OsGLYII1.1%2C OsGLYI11.2%2C OsGLYI11.3%2C OsGLYI-11.2%2C Glb33;Oryzabase Gene Name Synonym(s)=glyoxalase I-11%2C 33-kDa Allergen;Note=Glyoxalase I%2C Splicing variant%2C Stress tolerance;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Molecular Function: lactoylglutathione lyase activity (GO:0004462),Molecular Function: metal ion binding (GO:0046872);InterPro=Glyoxalase I (IPR004361),Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (IPR029068),Glyoxalase/fosfomycin resistance/dioxygenase domain (IPR004360),Glyoxalase I%2C conserved site (IPR018146);Manual Curation=January 26%2C 2015;Literature_PMID=24661284,21213008;Oryzabase=9361
Chr08	irgsp1_rep	five_prime_UTR	5377004	5377078	.	-	.	Parent=Os08t0191700-04
Chr08	irgsp1_rep	five_prime_UTR	5376138	5376139	.	-	.	Parent=Os08t0191700-04
Chr08	irgsp1_rep	CDS	5376019	5376137	.	-	0	Parent=Os08t0191700-04
Chr08	irgsp1_rep	CDS	5375822	5375946	.	-	1	Parent=Os08t0191700-04
Chr08	irgsp1_rep	CDS	5375539	5375603	.	-	2	Parent=Os08t0191700-04
Chr08	irgsp1_rep	CDS	5375212	5375427	.	-	0	Parent=Os08t0191700-04
Chr08	irgsp1_rep	CDS	5375033	5375080	.	-	0	Parent=Os08t0191700-04
Chr08	irgsp1_rep	CDS	5374785	5374892	.	-	0	Parent=Os08t0191700-04
Chr08	irgsp1_rep	CDS	5374507	5374704	.	-	0	Parent=Os08t0191700-04
Chr08	irgsp1_rep	three_prime_UTR	5373383	5374506	.	-	.	Parent=Os08t0191700-04
Chr08	irgsp1_rep	mRNA	5380261	5383885	.	-	.	ID=Os08t0191800-00;Name=Os08t0191800-00;Locus_id=Os08g0191800;Note=Similar to Tyrosyl-tRNA synthetase.;Transcript_evidence=BT037647 (DDBJ);ORF_evidence=B6TBW5 (UniProt);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: tyrosine-tRNA ligase activity (GO:0004831),Molecular Function: ATP binding (GO:0005524);InterPro=Aminoacyl-tRNA synthetase%2C class Ic (IPR002305),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Tyrosyl-tRNA synthetase%2C archaeal-type (IPR023617);TENOR=Os08t0191800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	5383874	5383885	.	-	.	Parent=Os08t0191800-00
Chr08	irgsp1_rep	CDS	5383718	5383873	.	-	0	Parent=Os08t0191800-00
Chr08	irgsp1_rep	CDS	5383179	5383478	.	-	0	Parent=Os08t0191800-00
Chr08	irgsp1_rep	CDS	5382941	5383015	.	-	0	Parent=Os08t0191800-00
Chr08	irgsp1_rep	CDS	5382306	5382408	.	-	0	Parent=Os08t0191800-00
Chr08	irgsp1_rep	CDS	5381998	5382077	.	-	2	Parent=Os08t0191800-00
Chr08	irgsp1_rep	CDS	5380825	5380970	.	-	0	Parent=Os08t0191800-00
Chr08	irgsp1_rep	CDS	5380604	5380709	.	-	1	Parent=Os08t0191800-00
Chr08	irgsp1_rep	CDS	5380261	5380368	.	-	0	Parent=Os08t0191800-00
Chr08	irgsp1_rep	mRNA	5384447	5388799	.	+	.	ID=Os08t0191900-01;Name=Os08t0191900-01;Locus_id=Os08g0191900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK067587 (DDBJ%2C Best hit),AK099016 (DDBJ%2C Best hit);ORF_evidence=A2YS10 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013112C20,J013116C12;Oryzabase=22759;TENOR=Os08t0191900-01
Chr08	irgsp1_rep	five_prime_UTR	5384447	5384533	.	+	.	Parent=Os08t0191900-01
Chr08	irgsp1_rep	CDS	5384534	5384595	.	+	0	Parent=Os08t0191900-01
Chr08	irgsp1_rep	CDS	5385270	5385588	.	+	1	Parent=Os08t0191900-01
Chr08	irgsp1_rep	CDS	5385725	5386015	.	+	0	Parent=Os08t0191900-01
Chr08	irgsp1_rep	CDS	5386864	5387112	.	+	0	Parent=Os08t0191900-01
Chr08	irgsp1_rep	CDS	5387187	5387311	.	+	0	Parent=Os08t0191900-01
Chr08	irgsp1_rep	CDS	5387831	5387929	.	+	1	Parent=Os08t0191900-01
Chr08	irgsp1_rep	CDS	5388012	5388696	.	+	1	Parent=Os08t0191900-01
Chr08	irgsp1_rep	three_prime_UTR	5388697	5388799	.	+	.	Parent=Os08t0191900-01
Chr08	irgsp1_rep	mRNA	5385370	5385976	.	-	.	ID=Os08t0192001-00;Name=Os08t0192001-00;Locus_id=Os08g0192001;Note=Non-protein coding transcript.;Transcript_evidence=EU948305 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0192001-00
Chr08	irgsp1_rep	exon	5385370	5385976	.	-	.	Parent=Os08t0192001-00
Chr08	irgsp1_rep	mRNA	5391860	5392486	.	+	.	ID=Os08t0192100-00;Name=Os08t0192100-00;Locus_id=Os08g0192100;Note=Hypothetical conserved gene.;Transcript_evidence=CT835995 (DDBJ%2C Best hit);ORF_evidence=B9FZG4 (UniProt);TENOR=Os08t0192100-00;KEGG=Os08t0192100-00
Chr08	irgsp1_rep	five_prime_UTR	5391860	5392008	.	+	.	Parent=Os08t0192100-00
Chr08	irgsp1_rep	CDS	5392009	5392263	.	+	0	Parent=Os08t0192100-00
Chr08	irgsp1_rep	three_prime_UTR	5392264	5392486	.	+	.	Parent=Os08t0192100-00
Chr08	irgsp1_rep	mRNA	5395517	5397475	.	+	.	ID=Os08t0192200-01;Name=Os08t0192200-01;Locus_id=Os08g0192200;Note=Conserved hypothetical protein.;Transcript_evidence=AK064428 (DDBJ%2C Best hit);ORF_evidence=Q6Z1C6 (UniProt);NIAS_FLcDNA=002-110-C10;Oryzabase=20460;TENOR=Os08t0192200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	5395517	5395644	.	+	.	Parent=Os08t0192200-01
Chr08	irgsp1_rep	five_prime_UTR	5396191	5396757	.	+	.	Parent=Os08t0192200-01
Chr08	irgsp1_rep	CDS	5396758	5397045	.	+	0	Parent=Os08t0192200-01
Chr08	irgsp1_rep	three_prime_UTR	5397046	5397475	.	+	.	Parent=Os08t0192200-01
Chr08	irgsp1_rep	mRNA	5400009	5400263	.	+	.	ID=Os08t0192300-00;Name=Os08t0192300-00;Locus_id=Os08g0192300;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6Z1C5 (UniProt);TENOR=Os08t0192300-00
Chr08	irgsp1_rep	CDS	5400009	5400263	.	+	0	Parent=Os08t0192300-00
Chr08	irgsp1_rep	mRNA	5401162	5404366	.	-	.	ID=Os08t0192400-00;Name=Os08t0192400-00;Locus_id=Os08g0192400;Note=Similar to DRP1 protein.;Transcript_evidence=AK333814 (DDBJ);ORF_evidence=B6UEJ2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634);InterPro=YL1 nuclear (IPR008895),YL1 nuclear%2C C-terminal (IPR013272);TENOR=Os08t0192400-00;KEGG=Os08t0192400-00
Chr08	irgsp1_rep	five_prime_UTR	5404344	5404366	.	-	.	Parent=Os08t0192400-00
Chr08	irgsp1_rep	CDS	5404273	5404343	.	-	0	Parent=Os08t0192400-00
Chr08	irgsp1_rep	CDS	5404100	5404169	.	-	1	Parent=Os08t0192400-00
Chr08	irgsp1_rep	CDS	5403775	5403846	.	-	0	Parent=Os08t0192400-00
Chr08	irgsp1_rep	CDS	5403606	5403649	.	-	0	Parent=Os08t0192400-00
Chr08	irgsp1_rep	CDS	5403254	5403521	.	-	1	Parent=Os08t0192400-00
Chr08	irgsp1_rep	CDS	5402997	5403063	.	-	0	Parent=Os08t0192400-00
Chr08	irgsp1_rep	CDS	5402463	5402582	.	-	2	Parent=Os08t0192400-00
Chr08	irgsp1_rep	CDS	5402250	5402318	.	-	2	Parent=Os08t0192400-00
Chr08	irgsp1_rep	CDS	5402071	5402113	.	-	2	Parent=Os08t0192400-00
Chr08	irgsp1_rep	CDS	5401523	5401588	.	-	1	Parent=Os08t0192400-00
Chr08	irgsp1_rep	CDS	5401185	5401380	.	-	1	Parent=Os08t0192400-00
Chr08	irgsp1_rep	three_prime_UTR	5401162	5401184	.	-	.	Parent=Os08t0192400-00
Chr08	irgsp1_rep	mRNA	5418272	5420390	.	+	.	ID=Os08t0192800-01;Name=Os08t0192800-01;Locus_id=Os08g0192800;Note=Bromodomain containing protein.;Transcript_evidence=AK120613 (DDBJ%2C Best hit),AK059490 (DDBJ%2C Best hit),AK101678 (DDBJ%2C Best hit);ORF_evidence=NP_001151218.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Bromodomain (IPR001487);NIAS_FLcDNA=J013151N01,001-028-G11,J033058G13;TENOR=Os08t0192800-01
Chr08	irgsp1_rep	five_prime_UTR	5418272	5418401	.	+	.	Parent=Os08t0192800-01
Chr08	irgsp1_rep	CDS	5418402	5419613	.	+	0	Parent=Os08t0192800-01
Chr08	irgsp1_rep	CDS	5419701	5419869	.	+	0	Parent=Os08t0192800-01
Chr08	irgsp1_rep	CDS	5419989	5420053	.	+	2	Parent=Os08t0192800-01
Chr08	irgsp1_rep	three_prime_UTR	5420054	5420390	.	+	.	Parent=Os08t0192800-01
Chr08	irgsp1_rep	mRNA	5422274	5426674	.	-	.	ID=Os08t0192900-01;Name=Os08t0192900-01;Locus_id=Os08g0192900;Oryzabase Gene Symbol Synonym(s)=OS-NUC;Oryzabase Gene Name Synonym(s)=RNA-binding nucleolin;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK103422 (DDBJ%2C Best hit);ORF_evidence=Q01JU3 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033128K11;Oryzabase=15169;Expression=AK103422;TENOR=Os08t0192900-01;KEGG=Os08t0192900-01
Chr08	irgsp1_rep	five_prime_UTR	5426572	5426674	.	-	.	Parent=Os08t0192900-01
Chr08	irgsp1_rep	CDS	5426296	5426571	.	-	0	Parent=Os08t0192900-01
Chr08	irgsp1_rep	CDS	5425870	5425956	.	-	0	Parent=Os08t0192900-01
Chr08	irgsp1_rep	CDS	5425689	5425793	.	-	0	Parent=Os08t0192900-01
Chr08	irgsp1_rep	CDS	5425389	5425490	.	-	0	Parent=Os08t0192900-01
Chr08	irgsp1_rep	CDS	5425153	5425245	.	-	0	Parent=Os08t0192900-01
Chr08	irgsp1_rep	CDS	5424854	5424961	.	-	0	Parent=Os08t0192900-01
Chr08	irgsp1_rep	CDS	5424667	5424747	.	-	0	Parent=Os08t0192900-01
Chr08	irgsp1_rep	CDS	5424524	5424559	.	-	0	Parent=Os08t0192900-01
Chr08	irgsp1_rep	CDS	5424351	5424442	.	-	0	Parent=Os08t0192900-01
Chr08	irgsp1_rep	CDS	5424156	5424273	.	-	1	Parent=Os08t0192900-01
Chr08	irgsp1_rep	CDS	5423833	5423921	.	-	0	Parent=Os08t0192900-01
Chr08	irgsp1_rep	CDS	5423648	5423738	.	-	1	Parent=Os08t0192900-01
Chr08	irgsp1_rep	CDS	5423488	5423579	.	-	0	Parent=Os08t0192900-01
Chr08	irgsp1_rep	CDS	5422677	5422996	.	-	1	Parent=Os08t0192900-01
Chr08	irgsp1_rep	CDS	5422541	5422569	.	-	2	Parent=Os08t0192900-01
Chr08	irgsp1_rep	three_prime_UTR	5422274	5422540	.	-	.	Parent=Os08t0192900-01
Chr08	irgsp1_rep	mRNA	5422334	5424749	.	-	.	ID=Os08t0192900-02;Name=Os08t0192900-02;Locus_id=Os08g0192900;Oryzabase Gene Symbol Synonym(s)=OS-NUC;Oryzabase Gene Name Synonym(s)=RNA-binding nucleolin;Note=Similar to H0714H04.9 protein.;Transcript_evidence=AK059471 (DDBJ%2C Best hit);ORF_evidence=Q01JU3 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-028-E02;Oryzabase=15169;Expression=AK059471;TENOR=Os08t0192900-02;KEGG=Os08t0192900-02
Chr08	irgsp1_rep	five_prime_UTR	5424748	5424749	.	-	.	Parent=Os08t0192900-02
Chr08	irgsp1_rep	CDS	5424667	5424747	.	-	0	Parent=Os08t0192900-02
Chr08	irgsp1_rep	CDS	5424524	5424559	.	-	0	Parent=Os08t0192900-02
Chr08	irgsp1_rep	CDS	5424351	5424442	.	-	0	Parent=Os08t0192900-02
Chr08	irgsp1_rep	CDS	5424156	5424273	.	-	1	Parent=Os08t0192900-02
Chr08	irgsp1_rep	CDS	5423833	5423921	.	-	0	Parent=Os08t0192900-02
Chr08	irgsp1_rep	CDS	5423648	5423738	.	-	1	Parent=Os08t0192900-02
Chr08	irgsp1_rep	CDS	5423488	5423579	.	-	0	Parent=Os08t0192900-02
Chr08	irgsp1_rep	CDS	5422677	5422996	.	-	1	Parent=Os08t0192900-02
Chr08	irgsp1_rep	CDS	5422541	5422569	.	-	2	Parent=Os08t0192900-02
Chr08	irgsp1_rep	three_prime_UTR	5422334	5422540	.	-	.	Parent=Os08t0192900-02
Chr08	irgsp1_rep	mRNA	5422644	5425791	.	+	.	ID=Os08t0192950-00;Name=Os08t0192950-00;Locus_id=Os08g0192950;Note=Hypothetical protein.;Transcript_evidence=BT023984 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0192950-00
Chr08	irgsp1_rep	five_prime_UTR	5422644	5422647	.	+	.	Parent=Os08t0192950-00
Chr08	irgsp1_rep	CDS	5422648	5422944	.	+	0	Parent=Os08t0192950-00
Chr08	irgsp1_rep	three_prime_UTR	5422945	5422995	.	+	.	Parent=Os08t0192950-00
Chr08	irgsp1_rep	three_prime_UTR	5423487	5423585	.	+	.	Parent=Os08t0192950-00
Chr08	irgsp1_rep	three_prime_UTR	5423653	5423729	.	+	.	Parent=Os08t0192950-00
Chr08	irgsp1_rep	three_prime_UTR	5423828	5423915	.	+	.	Parent=Os08t0192950-00
Chr08	irgsp1_rep	three_prime_UTR	5424145	5424434	.	+	.	Parent=Os08t0192950-00
Chr08	irgsp1_rep	three_prime_UTR	5424789	5424963	.	+	.	Parent=Os08t0192950-00
Chr08	irgsp1_rep	three_prime_UTR	5425067	5425267	.	+	.	Parent=Os08t0192950-00
Chr08	irgsp1_rep	three_prime_UTR	5425426	5425486	.	+	.	Parent=Os08t0192950-00
Chr08	irgsp1_rep	three_prime_UTR	5425674	5425791	.	+	.	Parent=Os08t0192950-00
Chr08	irgsp1_rep	mRNA	5432554	5434185	.	-	.	ID=Os08t0193000-00;Name=Os08t0193000-00;Locus_id=Os08g0193000;Note=Conserved hypothetical protein.;Transcript_evidence=BT062859 (DDBJ);ORF_evidence=Q6Z1B9 (UniProt);TENOR=Os08t0193000-00
Chr08	irgsp1_rep	CDS	5432554	5434185	.	-	0	Parent=Os08t0193000-00
Chr08	irgsp1_rep	mRNA	5435576	5439963	.	+	.	ID=Os08t0193100-01;Name=Os08t0193100-01;Locus_id=Os08g0193100;Note=Polyprenyl synthetase-related domain containing protein.;Transcript_evidence=AK099597 (DDBJ%2C Best hit);ORF_evidence=B9FZG8 (UniProt);InterPro=Polyprenyl synthetase-related (IPR017446);NIAS_FLcDNA=J013045G23;TENOR=Os08t0193100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	5435576	5435747	.	+	.	Parent=Os08t0193100-01
Chr08	irgsp1_rep	five_prime_UTR	5436017	5436109	.	+	.	Parent=Os08t0193100-01
Chr08	irgsp1_rep	five_prime_UTR	5436291	5436293	.	+	.	Parent=Os08t0193100-01
Chr08	irgsp1_rep	CDS	5436294	5436374	.	+	0	Parent=Os08t0193100-01
Chr08	irgsp1_rep	CDS	5436510	5436581	.	+	0	Parent=Os08t0193100-01
Chr08	irgsp1_rep	CDS	5436701	5436766	.	+	0	Parent=Os08t0193100-01
Chr08	irgsp1_rep	three_prime_UTR	5436767	5436839	.	+	.	Parent=Os08t0193100-01
Chr08	irgsp1_rep	three_prime_UTR	5436929	5437015	.	+	.	Parent=Os08t0193100-01
Chr08	irgsp1_rep	three_prime_UTR	5437470	5437544	.	+	.	Parent=Os08t0193100-01
Chr08	irgsp1_rep	three_prime_UTR	5437825	5437910	.	+	.	Parent=Os08t0193100-01
Chr08	irgsp1_rep	three_prime_UTR	5438852	5438949	.	+	.	Parent=Os08t0193100-01
Chr08	irgsp1_rep	three_prime_UTR	5439063	5439152	.	+	.	Parent=Os08t0193100-01
Chr08	irgsp1_rep	three_prime_UTR	5439344	5439442	.	+	.	Parent=Os08t0193100-01
Chr08	irgsp1_rep	three_prime_UTR	5439554	5439963	.	+	.	Parent=Os08t0193100-01
Chr08	irgsp1_rep	mRNA	5441457	5442964	.	-	.	ID=Os08t0193200-00;Name=Os08t0193200-00;Locus_id=Os08g0193200;Oryzabase Gene Symbol Synonym(s)=OsFbox409%2C Os_F0265;Oryzabase Gene Name Synonym(s)=F-box protein 409;Note=Hypothetical conserved gene.;Transcript_evidence=AK248578 (DDBJ);ORF_evidence=A2YS23 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17182;TENOR=Os08t0193200-00;KEGG=Os08t0193200-00
Chr08	irgsp1_rep	five_prime_UTR	5442916	5442964	.	-	.	Parent=Os08t0193200-00
Chr08	irgsp1_rep	CDS	5442579	5442915	.	-	0	Parent=Os08t0193200-00
Chr08	irgsp1_rep	CDS	5442172	5442182	.	-	2	Parent=Os08t0193200-00
Chr08	irgsp1_rep	three_prime_UTR	5441457	5442171	.	-	.	Parent=Os08t0193200-00
Chr08	irgsp1_rep	mRNA	5446749	5448654	.	-	.	ID=Os08t0193300-00;Name=Os08t0193300-00;Locus_id=Os08g0193300;Oryzabase Gene Symbol Synonym(s)=OsFbox410%2C Os_F0192;Oryzabase Gene Name Synonym(s)=F-box protein 410;Note=Hypothetical conserved gene.;Transcript_evidence=AK248578 (DDBJ);ORF_evidence=Q6Z1B6 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);Oryzabase=17183;TENOR=Os08t0193300-00;KEGG=Os08t0193300-00
Chr08	irgsp1_rep	five_prime_UTR	5448610	5448654	.	-	.	Parent=Os08t0193300-00
Chr08	irgsp1_rep	CDS	5448275	5448609	.	-	0	Parent=Os08t0193300-00
Chr08	irgsp1_rep	CDS	5446749	5447415	.	-	1	Parent=Os08t0193300-00
Chr08	irgsp1_rep	mRNA	5452058	5453811	.	-	.	ID=Os08t0193500-00;Name=Os08t0193500-00;Locus_id=Os08g0193500;Oryzabase Gene Symbol Synonym(s)=OsFbox411%2C Os_F0280;Oryzabase Gene Name Synonym(s)=F-box protein 411;Note=Hypothetical conserved gene.;Transcript_evidence=AK248578 (DDBJ);ORF_evidence=A2YS23 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17184;TENOR=Os08t0193500-00;KEGG=Os08t0193500-00
Chr08	irgsp1_rep	five_prime_UTR	5453775	5453811	.	-	.	Parent=Os08t0193500-00
Chr08	irgsp1_rep	CDS	5453443	5453774	.	-	0	Parent=Os08t0193500-00
Chr08	irgsp1_rep	CDS	5452726	5453031	.	-	1	Parent=Os08t0193500-00
Chr08	irgsp1_rep	CDS	5452469	5452490	.	-	1	Parent=Os08t0193500-00
Chr08	irgsp1_rep	three_prime_UTR	5452058	5452468	.	-	.	Parent=Os08t0193500-00
Chr08	irgsp1_rep	mRNA	5457347	5460486	.	+	.	ID=Os08t0193600-01;Name=Os08t0193600-01;Locus_id=Os08g0193600;Oryzabase Gene Symbol Synonym(s)=OsFbox412%2C Fbox412%2C Os_F0356;Oryzabase Gene Name Synonym(s)=F-box protein 412;Note=Hypothetical conserved gene.;Transcript_evidence=AK288657 (DDBJ%2C Best hit);ORF_evidence=NP_001061181.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J090057F16;Oryzabase=17185;TENOR=Os08t0193600-01;KEGG=Os08t0193600-01
Chr08	irgsp1_rep	five_prime_UTR	5457347	5457435	.	+	.	Parent=Os08t0193600-01
Chr08	irgsp1_rep	CDS	5457436	5458183	.	+	0	Parent=Os08t0193600-01
Chr08	irgsp1_rep	CDS	5459549	5459562	.	+	2	Parent=Os08t0193600-01
Chr08	irgsp1_rep	three_prime_UTR	5459563	5460486	.	+	.	Parent=Os08t0193600-01
Chr08	irgsp1_rep	mRNA	5466374	5469315	.	-	.	ID=Os08t0193700-00;Name=Os08t0193700-00;Locus_id=Os08g0193700;Note=Similar to NBS-LRR disease resistance protein homologue (Fragment).;Transcript_evidence=AJ507100 (DDBJ);ORF_evidence=Q84KB9 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);Oryzabase=14953;TENOR=Os08t0193700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	5469305	5469315	.	-	.	Parent=Os08t0193700-00
Chr08	irgsp1_rep	CDS	5468517	5469304	.	-	0	Parent=Os08t0193700-00
Chr08	irgsp1_rep	CDS	5466374	5468459	.	-	1	Parent=Os08t0193700-00
Chr08	irgsp1_rep	mRNA	5474996	5477814	.	-	.	ID=Os08t0193900-01;Name=Os08t0193900-01;Locus_id=Os08g0193900;Oryzabase Gene Symbol Synonym(s)=OsFbox413%2C Os_F0321;Oryzabase Gene Name Synonym(s)=F-box protein 413;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK107386 (DDBJ%2C Best hit);ORF_evidence=A2YS28 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-127-C07;Oryzabase=17186;Expression=AK107386;TENOR=Os08t0193900-01;KEGG=Os08t0193900-01
Chr08	irgsp1_rep	five_prime_UTR	5477774	5477814	.	-	.	Parent=Os08t0193900-01
Chr08	irgsp1_rep	CDS	5477217	5477773	.	-	0	Parent=Os08t0193900-01
Chr08	irgsp1_rep	CDS	5475372	5476005	.	-	1	Parent=Os08t0193900-01
Chr08	irgsp1_rep	three_prime_UTR	5475234	5475371	.	-	.	Parent=Os08t0193900-01
Chr08	irgsp1_rep	three_prime_UTR	5474996	5475142	.	-	.	Parent=Os08t0193900-01
Chr08	irgsp1_rep	mRNA	5479726	5481493	.	-	.	ID=Os08t0194000-00;Name=Os08t0194000-00;Locus_id=Os08g0194000;Oryzabase Gene Symbol Synonym(s)=OsFbox414%2C Os_F0654;Oryzabase Gene Name Synonym(s)=F-box protein 414;Note=F-box domain%2C Skp2-like domain containing protein.;Transcript_evidence=tplb0001o11 (Wheat FLcDNA);ORF_evidence=Q6Z1A7 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);Oryzabase=17187;TENOR=Os08t0194000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	5481111	5481493	.	-	0	Parent=Os08t0194000-00
Chr08	irgsp1_rep	CDS	5479726	5480479	.	-	1	Parent=Os08t0194000-00
Chr08	irgsp1_rep	mRNA	5517737	5519259	.	-	.	ID=Os08t0194350-00;Name=Os08t0194350-00;Locus_id=Os08g0194350;Note=F-box domain%2C Skp2-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3BC86 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);TENOR=Os08t0194350-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	5518925	5519259	.	-	0	Parent=Os08t0194350-00
Chr08	irgsp1_rep	CDS	5517737	5518202	.	-	1	Parent=Os08t0194350-00
Chr08	irgsp1_rep	mRNA	5532402	5536072	.	+	.	ID=Os08t0194501-00;Name=Os08t0194501-00;Locus_id=Os08g0194501;Note=Conserved hypothetical protein.;Transcript_evidence=CT835913 (DDBJ%2C Best hit);ORF_evidence=Q6Z947 (UniProt);TENOR=Os08t0194501-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	5532402	5532403	.	+	.	Parent=Os08t0194501-00
Chr08	irgsp1_rep	CDS	5532404	5532472	.	+	0	Parent=Os08t0194501-00
Chr08	irgsp1_rep	CDS	5532576	5532616	.	+	0	Parent=Os08t0194501-00
Chr08	irgsp1_rep	CDS	5535832	5535850	.	+	1	Parent=Os08t0194501-00
Chr08	irgsp1_rep	three_prime_UTR	5535851	5536072	.	+	.	Parent=Os08t0194501-00
Chr08	irgsp1_rep	mRNA	5543795	5545447	.	-	.	ID=Os08t0194850-00;Name=Os08t0194850-00;Locus_id=Os08g0194850;Note=Hypothetical protein.;Transcript_evidence=BT041543 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0194850-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	5545202	5545447	.	-	0	Parent=Os08t0194850-00
Chr08	irgsp1_rep	three_prime_UTR	5545181	5545201	.	-	.	Parent=Os08t0194850-00
Chr08	irgsp1_rep	three_prime_UTR	5543795	5545074	.	-	.	Parent=Os08t0194850-00
Chr08	irgsp1_rep	mRNA	5543765	5545891	.	+	.	ID=Os08t0194900-00;Name=Os08t0194900-00;Locus_id=Os08g0194900;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6Z945 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);TENOR=Os08t0194900-00;KEGG=Os08t0194900-00
Chr08	irgsp1_rep	CDS	5543765	5545891	.	+	0	Parent=Os08t0194900-00
Chr08	irgsp1_rep	mRNA	5551365	5553193	.	+	.	ID=Os08t0195000-00;Name=Os08t0195000-00;Locus_id=Os08g0195000;Oryzabase Gene Symbol Synonym(s)=OsFbox416%2C Os_F0464;Oryzabase Gene Name Synonym(s)=F-box protein 416;Note=F-box domain%2C Skp2-like domain containing protein.;Transcript_evidence=AK333402 (DDBJ);ORF_evidence=Q6Z944 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);Oryzabase=17189;TENOR=Os08t0195000-00
Chr08	irgsp1_rep	CDS	5551365	5551687	.	+	0	Parent=Os08t0195000-00
Chr08	irgsp1_rep	CDS	5552764	5553193	.	+	1	Parent=Os08t0195000-00
Chr08	irgsp1_rep	mRNA	5563255	5564422	.	-	.	ID=Os08t0195400-01;Name=Os08t0195400-01;Locus_id=Os08g0195400;Note=Protein of unknown function DUF3778 domain containing protein.;Transcript_evidence=AK070464 (DDBJ%2C Best hit),AK104389 (DDBJ%2C Best hit),AK106140 (DDBJ%2C Best hit);ORF_evidence=B8BBH8 (UniProt);InterPro=Protein of unknown function DUF3778 (IPR022256);NIAS_FLcDNA=J023054K19,006-201-H03,001-207-G08;TENOR=Os08t0195400-01
Chr08	irgsp1_rep	five_prime_UTR	5564206	5564422	.	-	.	Parent=Os08t0195400-01
Chr08	irgsp1_rep	CDS	5563354	5564205	.	-	0	Parent=Os08t0195400-01
Chr08	irgsp1_rep	three_prime_UTR	5563255	5563353	.	-	.	Parent=Os08t0195400-01
Chr08	irgsp1_rep	mRNA	5569446	5570315	.	-	.	ID=Os08t0195650-00;Name=Os08t0195650-00;Locus_id=Os08g0195650;Note=Conserved hypothetical protein.;Transcript_evidence=BT086074 (DDBJ);ORF_evidence=Q6Z074 (UniProt);TENOR=Os08t0195650-00
Chr08	irgsp1_rep	CDS	5569446	5570315	.	-	0	Parent=Os08t0195650-00
Chr08	irgsp1_rep	mRNA	5572031	5574384	.	-	.	ID=Os08t0195800-00;Name=Os08t0195800-00;Locus_id=Os08g0195800;Oryzabase Gene Symbol Synonym(s)=OsFbox417%2C Os_F0682;Oryzabase Gene Name Synonym(s)=F-box protein 417;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001061185.1 (RefSeq);InterPro=Leucine-rich repeat%2C cysteine-containing subtype (IPR006553),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17190;TENOR=Os08t0195800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	5574023	5574384	.	-	0	Parent=Os08t0195800-00
Chr08	irgsp1_rep	CDS	5572031	5572709	.	-	1	Parent=Os08t0195800-00
Chr08	irgsp1_rep	mRNA	5576467	5578655	.	-	.	ID=Os08t0195900-00;Name=Os08t0195900-00;Locus_id=Os08g0195900;Oryzabase Gene Symbol Synonym(s)=OsFbox418%2C Os_F0453;Oryzabase Gene Name Synonym(s)=F-box protein 418;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6Z071 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17191;TENOR=Os08t0195900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	5578243	5578655	.	-	0	Parent=Os08t0195900-00
Chr08	irgsp1_rep	CDS	5577422	5577586	.	-	1	Parent=Os08t0195900-00
Chr08	irgsp1_rep	CDS	5576467	5576797	.	-	1	Parent=Os08t0195900-00
Chr08	irgsp1_rep	mRNA	5584231	5587025	.	-	.	ID=Os08t0196200-01;Name=Os08t0196200-01;Locus_id=Os08g0196200;Note=Hypothetical conserved gene.;Transcript_evidence=AK287784 (DDBJ%2C Best hit);ORF_evidence=A2YS43 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J065171L24;TENOR=Os08t0196200-01;KEGG=Os08t0196200-01
Chr08	irgsp1_rep	five_prime_UTR	5586851	5587025	.	-	.	Parent=Os08t0196200-01
Chr08	irgsp1_rep	CDS	5586549	5586850	.	-	0	Parent=Os08t0196200-01
Chr08	irgsp1_rep	CDS	5585147	5585154	.	-	1	Parent=Os08t0196200-01
Chr08	irgsp1_rep	CDS	5584506	5585020	.	-	2	Parent=Os08t0196200-01
Chr08	irgsp1_rep	three_prime_UTR	5584231	5584505	.	-	.	Parent=Os08t0196200-01
Chr08	irgsp1_rep	mRNA	5597606	5601049	.	+	.	ID=Os08t0196700-01;Name=Os08t0196700-01;Locus_id=Os08g0196700;RAP-DB Gene Symbol Synonym(s)=HAP2A%2C OsHAP2A%2C NF-YA%2C CBF-B%2C NF-YA7%2C OsNF-YA7;RAP-DB Gene Name Synonym(s)=HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX%2C NUCLEAR FACTOR-Y subunit A7%2C NUCLEAR FACTOR-Y subunit NF-YA7%2C NF-YA transcription factor 7;CGSNL Gene Symbol=HAP2A;CGSNL Gene Name=HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX;Oryzabase Gene Symbol Synonym(s)=OsHAP2A%2C NF-YA%2C CBF-B%2C NF-YA7%2C OsNF-YA7%2C NFYA7;Oryzabase Gene Name Synonym(s)=NUCLEAR FACTOR-Y subunit A7%2C NUCLEAR FACTOR-Y subunit NF-YA7%2C NF-YA transcription factor 7%2C NF-YA subunit 7%2C NF-YA family 7;Note=HAP2 subunit of HAP complex%2C Nuclear Factor Y (NF-YA) transcription factor%2C Drought stress tolerance;Transcript_evidence=AK059903,AB288027;ORF_evidence=Q6Z065;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700);InterPro=Nuclear transcription factor Y subunit A (IPR001289);NIAS_FLcDNA=006-208-G09;Manual Curation=June 9%2C 2016;Literature_PMID=26706071,18193457;Oryzabase=8473;Expression=AK059903;TENOR=Os08t0196700-01;KEGG=Os08t0196700-01
Chr08	irgsp1_rep	five_prime_UTR	5597606	5597673	.	+	.	Parent=Os08t0196700-01
Chr08	irgsp1_rep	five_prime_UTR	5598704	5598729	.	+	.	Parent=Os08t0196700-01
Chr08	irgsp1_rep	CDS	5598730	5598837	.	+	0	Parent=Os08t0196700-01
Chr08	irgsp1_rep	CDS	5599080	5599151	.	+	0	Parent=Os08t0196700-01
Chr08	irgsp1_rep	CDS	5599226	5599390	.	+	0	Parent=Os08t0196700-01
Chr08	irgsp1_rep	CDS	5600562	5600798	.	+	0	Parent=Os08t0196700-01
Chr08	irgsp1_rep	three_prime_UTR	5600799	5601049	.	+	.	Parent=Os08t0196700-01
Chr08	irgsp1_rep	mRNA	5602622	5607315	.	+	.	ID=Os08t0196900-01;Name=Os08t0196900-01;Locus_id=Os08g0196900;Oryzabase Gene Symbol Synonym(s)=OsFBX270%2C OsKIX_5%2C OsFbox419%2C Os_F0547%2C OsEnS-118;Oryzabase Gene Name Synonym(s)=KIX domain protein 5%2C F-box protein 270%2C F-box protein 419%2C endosperm-specific gene 118;Note=Hypothetical conserved gene.;Transcript_evidence=AK241459 (DDBJ%2C Best hit);ORF_evidence=B8BBI1 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J065164E04;Oryzabase=13459;TENOR=Os08t0196900-01;KEGG=Os08t0196900-01
Chr08	irgsp1_rep	five_prime_UTR	5602622	5602681	.	+	.	Parent=Os08t0196900-01
Chr08	irgsp1_rep	CDS	5602682	5602767	.	+	0	Parent=Os08t0196900-01
Chr08	irgsp1_rep	CDS	5603786	5603894	.	+	1	Parent=Os08t0196900-01
Chr08	irgsp1_rep	CDS	5604794	5604974	.	+	0	Parent=Os08t0196900-01
Chr08	irgsp1_rep	CDS	5605585	5606360	.	+	2	Parent=Os08t0196900-01
Chr08	irgsp1_rep	CDS	5606686	5606841	.	+	0	Parent=Os08t0196900-01
Chr08	irgsp1_rep	CDS	5606971	5607066	.	+	0	Parent=Os08t0196900-01
Chr08	irgsp1_rep	three_prime_UTR	5607067	5607315	.	+	.	Parent=Os08t0196900-01
Chr08	irgsp1_rep	mRNA	5609250	5612337	.	+	.	ID=Os08t0197000-01;Name=Os08t0197000-01;Locus_id=Os08g0197000;Oryzabase Gene Symbol Synonym(s)=OsFbox420%2C Os_F0206;Oryzabase Gene Name Synonym(s)=F-box protein 420;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK109710 (DDBJ%2C Best hit);ORF_evidence=B9FZH6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-145-G12;Oryzabase=17192;Expression=AK109710;TENOR=Os08t0197000-01;KEGG=Os08t0197000-01
Chr08	irgsp1_rep	five_prime_UTR	5609250	5609299	.	+	.	Parent=Os08t0197000-01
Chr08	irgsp1_rep	five_prime_UTR	5609472	5609488	.	+	.	Parent=Os08t0197000-01
Chr08	irgsp1_rep	CDS	5609489	5610592	.	+	0	Parent=Os08t0197000-01
Chr08	irgsp1_rep	CDS	5611562	5611717	.	+	0	Parent=Os08t0197000-01
Chr08	irgsp1_rep	CDS	5611802	5612092	.	+	0	Parent=Os08t0197000-01
Chr08	irgsp1_rep	three_prime_UTR	5612093	5612337	.	+	.	Parent=Os08t0197000-01
Chr08	irgsp1_rep	mRNA	5613322	5616590	.	-	.	ID=Os08t0197025-01;Name=Os08t0197025-01;Locus_id=Os08g0197025;Note=Hypothetical gene.;Transcript_evidence=AK241585 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065181O16;TENOR=Os08t0197025-01;KEGG=Os08t0197025-01
Chr08	irgsp1_rep	five_prime_UTR	5615942	5616590	.	-	.	Parent=Os08t0197025-01
Chr08	irgsp1_rep	five_prime_UTR	5615702	5615857	.	-	.	Parent=Os08t0197025-01
Chr08	irgsp1_rep	five_prime_UTR	5614652	5614741	.	-	.	Parent=Os08t0197025-01
Chr08	irgsp1_rep	CDS	5614115	5614651	.	-	0	Parent=Os08t0197025-01
Chr08	irgsp1_rep	three_prime_UTR	5613561	5614114	.	-	.	Parent=Os08t0197025-01
Chr08	irgsp1_rep	three_prime_UTR	5613322	5613420	.	-	.	Parent=Os08t0197025-01
Chr08	irgsp1_rep	mRNA	5613578	5616235	.	+	.	ID=Os08t0197050-00;Name=Os08t0197050-00;Locus_id=Os08g0197050;Oryzabase Gene Symbol Synonym(s)=Os_F0199;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FZH7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17522;TENOR=Os08t0197050-00;KEGG=Os08t0197050-00
Chr08	irgsp1_rep	CDS	5613578	5614741	.	+	0	Parent=Os08t0197050-00
Chr08	irgsp1_rep	CDS	5615702	5615857	.	+	0	Parent=Os08t0197050-00
Chr08	irgsp1_rep	CDS	5615942	5616235	.	+	0	Parent=Os08t0197050-00
Chr08	irgsp1_rep	mRNA	5618541	5621553	.	+	.	ID=Os08t0197100-01;Name=Os08t0197100-01;Locus_id=Os08g0197100;Oryzabase Gene Symbol Synonym(s)=OsFbox421%2C Os_F0249;Oryzabase Gene Name Synonym(s)=F-box protein 421;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK110883 (DDBJ%2C Best hit);ORF_evidence=B9FZH8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-172-G11;Oryzabase=17193;Expression=AK110883;TENOR=Os08t0197100-01;KEGG=Os08t0197100-01
Chr08	irgsp1_rep	five_prime_UTR	5618541	5618640	.	+	.	Parent=Os08t0197100-01
Chr08	irgsp1_rep	five_prime_UTR	5618763	5618779	.	+	.	Parent=Os08t0197100-01
Chr08	irgsp1_rep	CDS	5618780	5619952	.	+	0	Parent=Os08t0197100-01
Chr08	irgsp1_rep	CDS	5621086	5621385	.	+	0	Parent=Os08t0197100-01
Chr08	irgsp1_rep	three_prime_UTR	5621386	5621553	.	+	.	Parent=Os08t0197100-01
Chr08	irgsp1_rep	mRNA	5623663	5626623	.	+	.	ID=Os08t0197200-01;Name=Os08t0197200-01;Locus_id=Os08g0197200;Oryzabase Gene Symbol Synonym(s)=OsFbox422%2C Os_F0246;Oryzabase Gene Name Synonym(s)=F-box protein 422;Note=Conserved hypothetical protein.;Transcript_evidence=AK106882 (DDBJ%2C Best hit);ORF_evidence=A3BQH2 (UniProt);NIAS_FLcDNA=002-118-F04;Oryzabase=17194;TENOR=Os08t0197200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	5623663	5623764	.	+	0	Parent=Os08t0197200-01
Chr08	irgsp1_rep	CDS	5623905	5624063	.	+	0	Parent=Os08t0197200-01
Chr08	irgsp1_rep	three_prime_UTR	5624064	5624977	.	+	.	Parent=Os08t0197200-01
Chr08	irgsp1_rep	three_prime_UTR	5625924	5626079	.	+	.	Parent=Os08t0197200-01
Chr08	irgsp1_rep	three_prime_UTR	5626160	5626623	.	+	.	Parent=Os08t0197200-01
Chr08	irgsp1_rep	mRNA	5628896	5632250	.	+	.	ID=Os08t0197300-01;Name=Os08t0197300-01;Locus_id=Os08g0197300;Oryzabase Gene Symbol Synonym(s)=OsFbox423%2C Os_F0386;Oryzabase Gene Name Synonym(s)=F-box protein 423;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK064147 (DDBJ%2C Best hit);ORF_evidence=B9FZH9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-103-C08;Oryzabase=17195;TENOR=Os08t0197300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	5628896	5629015	.	+	.	Parent=Os08t0197300-01
Chr08	irgsp1_rep	CDS	5629016	5629022	.	+	0	Parent=Os08t0197300-01
Chr08	irgsp1_rep	CDS	5629152	5629642	.	+	2	Parent=Os08t0197300-01
Chr08	irgsp1_rep	CDS	5629695	5629784	.	+	0	Parent=Os08t0197300-01
Chr08	irgsp1_rep	three_prime_UTR	5629785	5630509	.	+	.	Parent=Os08t0197300-01
Chr08	irgsp1_rep	three_prime_UTR	5631064	5631225	.	+	.	Parent=Os08t0197300-01
Chr08	irgsp1_rep	three_prime_UTR	5631328	5631517	.	+	.	Parent=Os08t0197300-01
Chr08	irgsp1_rep	three_prime_UTR	5631862	5632250	.	+	.	Parent=Os08t0197300-01
Chr08	irgsp1_rep	mRNA	5633346	5636220	.	+	.	ID=Os08t0197400-01;Name=Os08t0197400-01;Locus_id=Os08g0197400;Oryzabase Gene Symbol Synonym(s)=OsFbox424%2C Os_F0348;Oryzabase Gene Name Synonym(s)=F-box protein 424;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK069625 (DDBJ%2C Best hit);ORF_evidence=A3BQH4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023023L24;Oryzabase=17196;TENOR=Os08t0197400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	5633346	5633407	.	+	.	Parent=Os08t0197400-01
Chr08	irgsp1_rep	five_prime_UTR	5633493	5633569	.	+	.	Parent=Os08t0197400-01
Chr08	irgsp1_rep	CDS	5633570	5634739	.	+	0	Parent=Os08t0197400-01
Chr08	irgsp1_rep	CDS	5635229	5635384	.	+	0	Parent=Os08t0197400-01
Chr08	irgsp1_rep	CDS	5635459	5635648	.	+	0	Parent=Os08t0197400-01
Chr08	irgsp1_rep	CDS	5635934	5636073	.	+	2	Parent=Os08t0197400-01
Chr08	irgsp1_rep	three_prime_UTR	5636074	5636220	.	+	.	Parent=Os08t0197400-01
Chr08	irgsp1_rep	mRNA	5638269	5643201	.	+	.	ID=Os08t0197500-01;Name=Os08t0197500-01;Locus_id=Os08g0197500;Oryzabase Gene Symbol Synonym(s)=OsFbox425%2C Os_F0168;Oryzabase Gene Name Synonym(s)=F-box protein 425;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK068342 (DDBJ%2C Best hit);ORF_evidence=B7EGM4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013151I04;Oryzabase=17197;Expression=AK068342;TENOR=Os08t0197500-01;KEGG=Os08t0197500-01
Chr08	irgsp1_rep	five_prime_UTR	5638269	5639846	.	+	.	Parent=Os08t0197500-01
Chr08	irgsp1_rep	five_prime_UTR	5639940	5640016	.	+	.	Parent=Os08t0197500-01
Chr08	irgsp1_rep	CDS	5640017	5641165	.	+	0	Parent=Os08t0197500-01
Chr08	irgsp1_rep	CDS	5642074	5642229	.	+	0	Parent=Os08t0197500-01
Chr08	irgsp1_rep	CDS	5642307	5642496	.	+	0	Parent=Os08t0197500-01
Chr08	irgsp1_rep	CDS	5642832	5642968	.	+	2	Parent=Os08t0197500-01
Chr08	irgsp1_rep	three_prime_UTR	5642969	5643201	.	+	.	Parent=Os08t0197500-01
Chr08	irgsp1_rep	mRNA	5645714	5648057	.	-	.	ID=Os08t0197700-00;Name=Os08t0197700-00;Locus_id=Os08g0197700;Oryzabase Gene Symbol Synonym(s)=OsBiP5%2C OsBiP%2C BiP%2C BiP5%2C OsMed37_7%2C Med37_7;Oryzabase Gene Name Synonym(s)=ER chaperone BiP5%2C Binding protein 5%2C Mediator 37_7;Note=Similar to Luminal binding protein 5 precursor (BiP 5) (78 kDa glucose-regulated protein homolog 5) (GRP 78-5).;Transcript_evidence=tplb0024m02 (Wheat FLcDNA);ORF_evidence=Q03685 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Heat shock protein Hsp70 (IPR001023),Heat shock protein 70 (IPR013126),Heat shock protein 70%2C conserved site (IPR018181);Oryzabase=10086;TENOR=Os08t0197700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	5645763	5648057	.	-	0	Parent=Os08t0197700-00
Chr08	irgsp1_rep	three_prime_UTR	5645714	5645762	.	-	.	Parent=Os08t0197700-00
Chr08	irgsp1_rep	mRNA	5652681	5655649	.	+	.	ID=Os08t0197800-01;Name=Os08t0197800-01;Locus_id=Os08g0197800;Note=Conserved hypothetical protein.;Transcript_evidence=AK073035 (DDBJ%2C Best hit);ORF_evidence=B8BBQ6 (UniProt);NIAS_FLcDNA=J023148M13;TENOR=Os08t0197800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	5652681	5652793	.	+	.	Parent=Os08t0197800-01
Chr08	irgsp1_rep	five_prime_UTR	5652872	5653018	.	+	.	Parent=Os08t0197800-01
Chr08	irgsp1_rep	CDS	5653019	5654041	.	+	0	Parent=Os08t0197800-01
Chr08	irgsp1_rep	CDS	5654571	5654726	.	+	0	Parent=Os08t0197800-01
Chr08	irgsp1_rep	CDS	5654843	5655040	.	+	0	Parent=Os08t0197800-01
Chr08	irgsp1_rep	three_prime_UTR	5655041	5655649	.	+	.	Parent=Os08t0197800-01
Chr08	irgsp1_rep	mRNA	5658727	5659464	.	+	.	ID=Os08t0197900-00;Name=Os08t0197900-00;Locus_id=Os08g0197900;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FZI2 (UniProt);TENOR=Os08t0197900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	5658727	5659464	.	+	0	Parent=Os08t0197900-00
Chr08	irgsp1_rep	mRNA	5659559	5661224	.	+	.	ID=Os08t0197950-01;Name=Os08t0197950-01;Locus_id=Os08g0197950;Note=Hypothetical conserved gene.;Transcript_evidence=AK242844 (DDBJ%2C Best hit);ORF_evidence=Q6Z055 (UniProt);NIAS_FLcDNA=J090071G23;TENOR=Os08t0197950-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	5659559	5659585	.	+	.	Parent=Os08t0197950-01
Chr08	irgsp1_rep	CDS	5659586	5660107	.	+	0	Parent=Os08t0197950-01
Chr08	irgsp1_rep	three_prime_UTR	5660108	5661224	.	+	.	Parent=Os08t0197950-01
Chr08	irgsp1_rep	mRNA	5663578	5664043	.	-	.	ID=Os08t0198000-00;Name=Os08t0198000-00;Locus_id=Os08g0198000;CGSNL Gene Symbol=WRKY105;CGSNL Gene Name=WRKY GENE 105;Oryzabase Gene Symbol Synonym(s)=OsWRKY105;Note=HAT dimerisation domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001061196.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein dimerization activity (GO:0046983);InterPro=HAT dimerisation (IPR008906),Ribonuclease H-like (IPR012337);Oryzabase=9222;TENOR=Os08t0198000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	5663707	5664043	.	-	0	Parent=Os08t0198000-00
Chr08	irgsp1_rep	CDS	5663578	5663606	.	-	2	Parent=Os08t0198000-00
Chr08	irgsp1_rep	mRNA	5672471	5676449	.	-	.	ID=Os08t0198100-00;Name=Os08t0198100-00;Locus_id=Os08g0198100;CGSNL Gene Symbol=WRKY106;CGSNL Gene Name=WRKY GENE 106;Oryzabase Gene Symbol Synonym(s)=OsWRKY106;Note=Zinc finger%2C BED-type predicted domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3BQI0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Zinc finger%2C BED-type predicted (IPR003656),DNA-binding WRKY (IPR003657),HAT dimerisation (IPR008906),Ribonuclease H-like (IPR012337);Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=9223;TENOR=Os08t0198100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	5675881	5676449	.	-	0	Parent=Os08t0198100-00
Chr08	irgsp1_rep	CDS	5675697	5675798	.	-	1	Parent=Os08t0198100-00
Chr08	irgsp1_rep	CDS	5675347	5675398	.	-	1	Parent=Os08t0198100-00
Chr08	irgsp1_rep	CDS	5672645	5674505	.	-	0	Parent=Os08t0198100-00
Chr08	irgsp1_rep	CDS	5672471	5672499	.	-	2	Parent=Os08t0198100-00
Chr08	irgsp1_rep	mRNA	5677979	5679084	.	+	.	ID=Os08t0198200-00;Name=Os08t0198200-00;Locus_id=Os08g0198200;Note=Hypothetical conserved gene.;Transcript_evidence=BT018721 (DDBJ);ORF_evidence=NP_001042193.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);TENOR=Os08t0198200-00;KEGG=Os08t0198200-00
Chr08	irgsp1_rep	five_prime_UTR	5677979	5678050	.	+	.	Parent=Os08t0198200-00
Chr08	irgsp1_rep	CDS	5678051	5678490	.	+	0	Parent=Os08t0198200-00
Chr08	irgsp1_rep	CDS	5678743	5678794	.	+	1	Parent=Os08t0198200-00
Chr08	irgsp1_rep	three_prime_UTR	5678795	5679084	.	+	.	Parent=Os08t0198200-00
Chr08	irgsp1_rep	mRNA	5681460	5683088	.	+	.	ID=Os08t0198300-01;Name=Os08t0198300-01;Locus_id=Os08g0198300;Note=Similar to speckle-type POZ protein.;Transcript_evidence=AK105288 (DDBJ%2C Best hit);ORF_evidence=NP_001147764.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069);NIAS_FLcDNA=001-116-F01;TENOR=Os08t0198300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	5681460	5681515	.	+	.	Parent=Os08t0198300-01
Chr08	irgsp1_rep	CDS	5681516	5681528	.	+	0	Parent=Os08t0198300-01
Chr08	irgsp1_rep	CDS	5681864	5682927	.	+	2	Parent=Os08t0198300-01
Chr08	irgsp1_rep	three_prime_UTR	5682928	5683088	.	+	.	Parent=Os08t0198300-01
Chr08	irgsp1_rep	mRNA	5691120	5697423	.	+	.	ID=Os08t0198700-01;Name=Os08t0198700-01;Locus_id=Os08g0198700;CGSNL Gene Symbol=GLO6;CGSNL Gene Name=GLYCOLATE OXIDASE 6;Oryzabase Gene Symbol Synonym(s)=GLO6%2C OsGLO6;Oryzabase Gene Name Synonym(s)=Glycolate oxidase 6;Note=Similar to Glycolate oxidase (EC 1.1.3.15) (Fragment).;Transcript_evidence=AK060371 (DDBJ%2C Best hit);ORF_evidence=Q10CE4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FMN-dependent dehydrogenase (IPR000262),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=001-009-B06;Oryzabase=12477;Expression=AK060371;TENOR=Os08t0198700-01;KEGG=Os08t0198700-01 (EC:1.1.3.15)
Chr08	irgsp1_rep	five_prime_UTR	5691120	5691206	.	+	.	Parent=Os08t0198700-01
Chr08	irgsp1_rep	five_prime_UTR	5691689	5691771	.	+	.	Parent=Os08t0198700-01
Chr08	irgsp1_rep	five_prime_UTR	5691832	5691975	.	+	.	Parent=Os08t0198700-01
Chr08	irgsp1_rep	five_prime_UTR	5692063	5692189	.	+	.	Parent=Os08t0198700-01
Chr08	irgsp1_rep	five_prime_UTR	5693077	5693289	.	+	.	Parent=Os08t0198700-01
Chr08	irgsp1_rep	CDS	5693290	5693300	.	+	0	Parent=Os08t0198700-01
Chr08	irgsp1_rep	CDS	5693562	5693686	.	+	1	Parent=Os08t0198700-01
Chr08	irgsp1_rep	CDS	5693918	5693964	.	+	2	Parent=Os08t0198700-01
Chr08	irgsp1_rep	CDS	5694098	5694127	.	+	0	Parent=Os08t0198700-01
Chr08	irgsp1_rep	three_prime_UTR	5694128	5694173	.	+	.	Parent=Os08t0198700-01
Chr08	irgsp1_rep	three_prime_UTR	5694262	5694392	.	+	.	Parent=Os08t0198700-01
Chr08	irgsp1_rep	three_prime_UTR	5695411	5695501	.	+	.	Parent=Os08t0198700-01
Chr08	irgsp1_rep	three_prime_UTR	5697115	5697423	.	+	.	Parent=Os08t0198700-01
Chr08	irgsp1_rep	mRNA	5691931	5697423	.	+	.	ID=Os08t0198700-02;Name=Os08t0198700-02;Locus_id=Os08g0198700;CGSNL Gene Symbol=GLO6;CGSNL Gene Name=GLYCOLATE OXIDASE 6;Oryzabase Gene Symbol Synonym(s)=GLO6%2C OsGLO6;Oryzabase Gene Name Synonym(s)=Glycolate oxidase 6;Note=Similar to Glycolate oxidase (EC 1.1.3.15) (Fragment).;Transcript_evidence=AK061018 (DDBJ%2C Best hit);ORF_evidence=Q10CE4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FMN-dependent dehydrogenase (IPR000262),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=006-204-C01;Oryzabase=12477;Expression=AK061018;TENOR=Os08t0198700-02;KEGG=Os08t0198700-02 (EC:1.1.3.15)
Chr08	irgsp1_rep	five_prime_UTR	5691931	5691975	.	+	.	Parent=Os08t0198700-02
Chr08	irgsp1_rep	five_prime_UTR	5692063	5692189	.	+	.	Parent=Os08t0198700-02
Chr08	irgsp1_rep	five_prime_UTR	5693108	5693289	.	+	.	Parent=Os08t0198700-02
Chr08	irgsp1_rep	CDS	5693290	5693300	.	+	0	Parent=Os08t0198700-02
Chr08	irgsp1_rep	CDS	5693562	5693686	.	+	1	Parent=Os08t0198700-02
Chr08	irgsp1_rep	CDS	5693918	5693964	.	+	2	Parent=Os08t0198700-02
Chr08	irgsp1_rep	CDS	5694098	5694127	.	+	0	Parent=Os08t0198700-02
Chr08	irgsp1_rep	three_prime_UTR	5694128	5694173	.	+	.	Parent=Os08t0198700-02
Chr08	irgsp1_rep	three_prime_UTR	5694262	5694392	.	+	.	Parent=Os08t0198700-02
Chr08	irgsp1_rep	three_prime_UTR	5695411	5695501	.	+	.	Parent=Os08t0198700-02
Chr08	irgsp1_rep	three_prime_UTR	5697115	5697423	.	+	.	Parent=Os08t0198700-02
Chr08	irgsp1_rep	mRNA	5706417	5709046	.	-	.	ID=Os08t0198800-01;Name=Os08t0198800-01;Locus_id=Os08g0198800;Note=Conserved hypothetical protein.;Transcript_evidence=AK103382 (DDBJ%2C Best hit);ORF_evidence=B9FZI5 (UniProt);NIAS_FLcDNA=J033127F11;TENOR=Os08t0198800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	5709038	5709046	.	-	.	Parent=Os08t0198800-01
Chr08	irgsp1_rep	CDS	5707325	5709037	.	-	0	Parent=Os08t0198800-01
Chr08	irgsp1_rep	three_prime_UTR	5706417	5707324	.	-	.	Parent=Os08t0198800-01
Chr08	irgsp1_rep	mRNA	5713945	5719160	.	-	.	ID=Os08t0198900-01;Name=Os08t0198900-01;Locus_id=Os08g0198900;CGSNL Gene Symbol=WRKY118;CGSNL Gene Name=WRKY GENE 118;Oryzabase Gene Symbol Synonym(s)=OsWRKY118;Note=Conserved hypothetical protein.;Transcript_evidence=AK103696 (DDBJ%2C Best hit);ORF_evidence=B8BBN2 (UniProt);NIAS_FLcDNA=J033136J23;Oryzabase=9225;TENOR=Os08t0198900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	5719121	5719160	.	-	.	Parent=Os08t0198900-01
Chr08	irgsp1_rep	CDS	5718857	5719120	.	-	0	Parent=Os08t0198900-01
Chr08	irgsp1_rep	three_prime_UTR	5718670	5718856	.	-	.	Parent=Os08t0198900-01
Chr08	irgsp1_rep	three_prime_UTR	5717359	5717976	.	-	.	Parent=Os08t0198900-01
Chr08	irgsp1_rep	three_prime_UTR	5716871	5716969	.	-	.	Parent=Os08t0198900-01
Chr08	irgsp1_rep	three_prime_UTR	5714561	5716392	.	-	.	Parent=Os08t0198900-01
Chr08	irgsp1_rep	three_prime_UTR	5714402	5714475	.	-	.	Parent=Os08t0198900-01
Chr08	irgsp1_rep	three_prime_UTR	5713945	5714286	.	-	.	Parent=Os08t0198900-01
Chr08	irgsp1_rep	mRNA	5720470	5723936	.	+	.	ID=Os08t0199000-01;Name=Os08t0199000-01;Locus_id=Os08g0199000;Oryzabase Gene Symbol Synonym(s)=OsFbox426%2C Os_F0184;Oryzabase Gene Name Synonym(s)=F-box protein 426;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK065993 (DDBJ%2C Best hit);ORF_evidence=B8BBN3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013047L10;Oryzabase=17198;TENOR=Os08t0199000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	5720470	5720564	.	+	.	Parent=Os08t0199000-01
Chr08	irgsp1_rep	five_prime_UTR	5720680	5720696	.	+	.	Parent=Os08t0199000-01
Chr08	irgsp1_rep	CDS	5720697	5720703	.	+	0	Parent=Os08t0199000-01
Chr08	irgsp1_rep	CDS	5720815	5722220	.	+	2	Parent=Os08t0199000-01
Chr08	irgsp1_rep	three_prime_UTR	5722221	5723017	.	+	.	Parent=Os08t0199000-01
Chr08	irgsp1_rep	three_prime_UTR	5723113	5723936	.	+	.	Parent=Os08t0199000-01
Chr08	irgsp1_rep	mRNA	5728025	5729681	.	+	.	ID=Os08t0199100-01;Name=Os08t0199100-01;Locus_id=Os08g0199100;Oryzabase Gene Symbol Synonym(s)=OsFbox427%2C Os_F0221;Oryzabase Gene Name Synonym(s)=F-box protein 427;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK106893 (DDBJ%2C Best hit);ORF_evidence=B8BBN4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-118-G08;Oryzabase=17199;TENOR=Os08t0199100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	5728025	5728245	.	+	.	Parent=Os08t0199100-01
Chr08	irgsp1_rep	CDS	5728246	5729586	.	+	0	Parent=Os08t0199100-01
Chr08	irgsp1_rep	three_prime_UTR	5729587	5729681	.	+	.	Parent=Os08t0199100-01
Chr08	irgsp1_rep	mRNA	5735464	5735969	.	+	.	ID=Os08t0199200-01;Name=Os08t0199200-01;Locus_id=Os08g0199200;Oryzabase Gene Symbol Synonym(s)=OsSTA206;Note=Conserved hypothetical protein.;Transcript_evidence=AK063127 (DDBJ%2C Best hit);ORF_evidence=A3BQI9 (UniProt);NIAS_FLcDNA=001-111-F02;Oryzabase=19482;TENOR=Os08t0199200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	5735464	5735465	.	+	.	Parent=Os08t0199200-01
Chr08	irgsp1_rep	CDS	5735466	5735528	.	+	0	Parent=Os08t0199200-01
Chr08	irgsp1_rep	three_prime_UTR	5735529	5735643	.	+	.	Parent=Os08t0199200-01
Chr08	irgsp1_rep	three_prime_UTR	5735754	5735969	.	+	.	Parent=Os08t0199200-01
Chr08	irgsp1_rep	mRNA	5746738	5751829	.	+	.	ID=Os08t0199300-01;Name=Os08t0199300-01;Locus_id=Os08g0199300;RAP-DB Gene Symbol Synonym(s)=OsYchF1;Oryzabase Gene Symbol Synonym(s)=OsYchF1%2C YchF1%2C OsPM8ATP;Oryzabase Gene Name Synonym(s)=YchF domain-containing protein 1;Note=Ancient YchF-type P-loop NTPase%2C A member of the YchF subfamily%2C Unconventional G protein%2C Plant defense response%2C Salinity stress tolerance;Transcript_evidence=AK062256,AK098917,AK121741;ORF_evidence=Q6Z1J6;GO=Molecular Function: GTP binding (GO:0005525);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),Beta-grasp domain superfamily (IPR012675),TGS-like domain superfamily (IPR023192),TGS-like (IPR012676),Ribosome-binding ATPase YchF/Obg-like ATPase 1 (IPR004396),GTP binding domain (IPR006073),OBG-type guanine nucleotide-binding (G) domain (IPR031167),YchF%2C N-terminal (IPR041706),YchF%2C C-terminal domain (IPR013029);NIAS_FLcDNA=001-047-G08,J013002L20,J033085L09;Manual Curation=September 23%2C 2020;Literature_PMID=26912459,23550829,20876569;Oryzabase=19860;TENOR=Os08t0199300-01;Subcellular location=cytoplasm (GO:0005737) [mainly], plasma membrane (GO:0005886), plasma membrane (GO:0005886) [wounded], cytosol (GO:0005829) [salt stress]
Chr08	irgsp1_rep	five_prime_UTR	5746738	5746843	.	+	.	Parent=Os08t0199300-01
Chr08	irgsp1_rep	CDS	5746844	5746930	.	+	0	Parent=Os08t0199300-01
Chr08	irgsp1_rep	CDS	5747835	5748002	.	+	0	Parent=Os08t0199300-01
Chr08	irgsp1_rep	CDS	5748085	5748208	.	+	0	Parent=Os08t0199300-01
Chr08	irgsp1_rep	CDS	5748422	5748513	.	+	2	Parent=Os08t0199300-01
Chr08	irgsp1_rep	CDS	5748598	5748696	.	+	0	Parent=Os08t0199300-01
Chr08	irgsp1_rep	CDS	5748820	5748933	.	+	0	Parent=Os08t0199300-01
Chr08	irgsp1_rep	CDS	5749534	5749598	.	+	0	Parent=Os08t0199300-01
Chr08	irgsp1_rep	CDS	5749686	5749800	.	+	1	Parent=Os08t0199300-01
Chr08	irgsp1_rep	CDS	5750212	5750289	.	+	0	Parent=Os08t0199300-01
Chr08	irgsp1_rep	CDS	5750846	5750938	.	+	0	Parent=Os08t0199300-01
Chr08	irgsp1_rep	CDS	5751288	5751338	.	+	0	Parent=Os08t0199300-01
Chr08	irgsp1_rep	CDS	5751428	5751526	.	+	0	Parent=Os08t0199300-01
Chr08	irgsp1_rep	three_prime_UTR	5751527	5751829	.	+	.	Parent=Os08t0199300-01
Chr08	irgsp1_rep	mRNA	5751863	5753741	.	-	.	ID=Os08t0199400-01;Name=Os08t0199400-01;Locus_id=Os08g0199400;Note=Similar to Stearoyl-acyl carrier protein desaturse (EC 1.14.99.6) (Fragment).;Transcript_evidence=AK105852 (DDBJ%2C Best hit);ORF_evidence=A2YS71 (UniProt);GO=Biological Process: fatty acid metabolic process (GO:0006631),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: acyl-[acyl-carrier-protein] desaturase activity (GO:0045300),Molecular Function: transition metal ion binding (GO:0046914);InterPro=Fatty acid desaturase%2C type 2 (IPR005067),Ferritin/ribonucleotide reductase-like (IPR009078),Ribonucleotide reductase-related (IPR012348);NIAS_FLcDNA=001-203-G10;Expression=AK105852;TENOR=Os08t0199400-01;KEGG=Os08t0199400-01 (EC:1.14.19.2%2C EC:1.14.99.6)
Chr08	irgsp1_rep	five_prime_UTR	5753660	5753741	.	-	.	Parent=Os08t0199400-01
Chr08	irgsp1_rep	CDS	5753532	5753659	.	-	0	Parent=Os08t0199400-01
Chr08	irgsp1_rep	CDS	5752085	5753216	.	-	1	Parent=Os08t0199400-01
Chr08	irgsp1_rep	three_prime_UTR	5751863	5752084	.	-	.	Parent=Os08t0199400-01
Chr08	irgsp1_rep	mRNA	5752141	5753244	.	+	.	ID=Os08t0199525-00;Name=Os08t0199525-00;Locus_id=Os08g0199525;Note=ADP-glucose pyrophosphorylase%2C conserved site domain containing protein.;Transcript_evidence=EU945314 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0199525-00;KEGG=Os08t0199525-00
Chr08	irgsp1_rep	five_prime_UTR	5752141	5752676	.	+	.	Parent=Os08t0199525-00
Chr08	irgsp1_rep	CDS	5752677	5753126	.	+	0	Parent=Os08t0199525-00
Chr08	irgsp1_rep	three_prime_UTR	5753127	5753244	.	+	.	Parent=Os08t0199525-00
Chr08	irgsp1_rep	mRNA	5767787	5768582	.	-	.	ID=Os08t0199775-00;Name=Os08t0199775-00;Locus_id=Os08g0199775;Note=Hypothetical gene.;Transcript_evidence=CT835923 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os08t0199775-00;KEGG=Os08t0199775-00
Chr08	irgsp1_rep	five_prime_UTR	5768219	5768582	.	-	.	Parent=Os08t0199775-00
Chr08	irgsp1_rep	CDS	5768132	5768218	.	-	0	Parent=Os08t0199775-00
Chr08	irgsp1_rep	CDS	5767960	5768112	.	-	0	Parent=Os08t0199775-00
Chr08	irgsp1_rep	three_prime_UTR	5767787	5767959	.	-	.	Parent=Os08t0199775-00
Chr08	irgsp1_rep	mRNA	5787597	5789135	.	-	.	ID=Os08t0200100-01;Name=Os08t0200100-01;Locus_id=Os08g0200100;Note=Ribonucleotide reductase-related domain containing protein.;Transcript_evidence=AK241294 (DDBJ%2C Best hit);ORF_evidence=A2YS76 (UniProt);GO=Biological Process: fatty acid metabolic process (GO:0006631),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: acyl-[acyl-carrier-protein] desaturase activity (GO:0045300),Molecular Function: transition metal ion binding (GO:0046914);InterPro=Fatty acid desaturase%2C type 2 (IPR005067),Ferritin/ribonucleotide reductase-like (IPR009078),Ribonucleotide reductase-related (IPR012348);NIAS_FLcDNA=J065138H01;TENOR=Os08t0200100-01;KEGG=Os08t0200100-01 (EC:1.14.19.2)
Chr08	irgsp1_rep	five_prime_UTR	5789020	5789135	.	-	.	Parent=Os08t0200100-01
Chr08	irgsp1_rep	CDS	5788916	5789019	.	-	0	Parent=Os08t0200100-01
Chr08	irgsp1_rep	CDS	5787737	5788847	.	-	1	Parent=Os08t0200100-01
Chr08	irgsp1_rep	three_prime_UTR	5787597	5787736	.	-	.	Parent=Os08t0200100-01
Chr08	irgsp1_rep	mRNA	5806463	5808326	.	-	.	ID=Os08t0200300-02;Name=Os08t0200300-02;Locus_id=Os08g0200300;Oryzabase Gene Symbol Synonym(s)=OsPsbR3%2C PsbR3;Oryzabase Gene Name Synonym(s)=PSII subunit PsbR3%2C photosystem II subunit PsbR3;Note=Similar to Photosystem II 10 kDa polypeptide (Fragment).;Transcript_evidence=AK121083 (DDBJ%2C Best hit),AK105055 (DDBJ%2C Best hit);ORF_evidence=P93443 (UniProt);NIAS_FLcDNA=J023063I15,001-042-F10;Oryzabase=19548;Expression=AK121083;TENOR=Os08t0200300-02;KEGG=Os08t0200300-02
Chr08	irgsp1_rep	five_prime_UTR	5808248	5808326	.	-	.	Parent=Os08t0200300-02
Chr08	irgsp1_rep	CDS	5808112	5808247	.	-	0	Parent=Os08t0200300-02
Chr08	irgsp1_rep	CDS	5807934	5807986	.	-	2	Parent=Os08t0200300-02
Chr08	irgsp1_rep	CDS	5807633	5807688	.	-	0	Parent=Os08t0200300-02
Chr08	irgsp1_rep	CDS	5807467	5807519	.	-	1	Parent=Os08t0200300-02
Chr08	irgsp1_rep	CDS	5806701	5806795	.	-	2	Parent=Os08t0200300-02
Chr08	irgsp1_rep	three_prime_UTR	5806463	5806700	.	-	.	Parent=Os08t0200300-02
Chr08	irgsp1_rep	mRNA	5811115	5816028	.	-	.	ID=Os08t0200400-01;Name=Os08t0200400-01;Locus_id=Os08g0200400;Note=K Homology domain containing protein.;Transcript_evidence=AK067859 (DDBJ%2C Best hit);ORF_evidence=F2EIP7 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=K Homology (IPR004087),K Homology%2C type 1 (IPR004088),K Homology%2C type 1%2C subgroup (IPR018111);NIAS_FLcDNA=J013122M06;TENOR=Os08t0200400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	5815942	5816028	.	-	.	Parent=Os08t0200400-01
Chr08	irgsp1_rep	CDS	5815923	5815941	.	-	0	Parent=Os08t0200400-01
Chr08	irgsp1_rep	CDS	5815020	5815381	.	-	2	Parent=Os08t0200400-01
Chr08	irgsp1_rep	CDS	5814920	5814943	.	-	0	Parent=Os08t0200400-01
Chr08	irgsp1_rep	three_prime_UTR	5814798	5814919	.	-	.	Parent=Os08t0200400-01
Chr08	irgsp1_rep	three_prime_UTR	5813591	5814091	.	-	.	Parent=Os08t0200400-01
Chr08	irgsp1_rep	three_prime_UTR	5813268	5813507	.	-	.	Parent=Os08t0200400-01
Chr08	irgsp1_rep	three_prime_UTR	5812915	5813196	.	-	.	Parent=Os08t0200400-01
Chr08	irgsp1_rep	three_prime_UTR	5812760	5812815	.	-	.	Parent=Os08t0200400-01
Chr08	irgsp1_rep	three_prime_UTR	5812280	5812370	.	-	.	Parent=Os08t0200400-01
Chr08	irgsp1_rep	three_prime_UTR	5811115	5811693	.	-	.	Parent=Os08t0200400-01
Chr08	irgsp1_rep	mRNA	5840300	5843516	.	+	.	ID=Os08t0200500-01;Name=Os08t0200500-01;Locus_id=Os08g0200500;CGSNL Gene Symbol=RLCK247;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 247;Oryzabase Gene Symbol Synonym(s)=OsRLCK247;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 247;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK063275 (DDBJ%2C Best hit);ORF_evidence=B6U5V2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-113-C04;Oryzabase=18938;TENOR=Os08t0200500-01
Chr08	irgsp1_rep	five_prime_UTR	5840300	5840461	.	+	.	Parent=Os08t0200500-01
Chr08	irgsp1_rep	five_prime_UTR	5841896	5841935	.	+	.	Parent=Os08t0200500-01
Chr08	irgsp1_rep	CDS	5841936	5841993	.	+	0	Parent=Os08t0200500-01
Chr08	irgsp1_rep	CDS	5842094	5842200	.	+	2	Parent=Os08t0200500-01
Chr08	irgsp1_rep	CDS	5842297	5842507	.	+	0	Parent=Os08t0200500-01
Chr08	irgsp1_rep	CDS	5842588	5842825	.	+	2	Parent=Os08t0200500-01
Chr08	irgsp1_rep	CDS	5842914	5843064	.	+	1	Parent=Os08t0200500-01
Chr08	irgsp1_rep	CDS	5843173	5843516	.	+	0	Parent=Os08t0200500-01
Chr08	irgsp1_rep	mRNA	5846868	5850647	.	-	.	ID=Os08t0200600-01;Name=Os08t0200600-01;Locus_id=Os08g0200600;RAP-DB Gene Symbol Synonym(s)=OMTN6%2C ONAC104;RAP-DB Gene Name Synonym(s)=Oryza miR164-targeted NAC6%2C NAC domain-containing protein 104;CGSNL Gene Symbol=NAC104;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 104;Oryzabase Gene Symbol Synonym(s)=OMTN6%2C ONAC104%2C DLN206%2C OsDLN206;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 104%2C NAC domain-containing protein 104%2C miR164-targeted NAC6%2C Oryza miR164-targeted NAC6%2C DLN repressor 206%2C DLN motif protein 206;Note=NAC transcription factor%2C Negative regulation of drought tolerance;Transcript_evidence=AK120197;ORF_evidence=Q6Z1A3;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=NAC domain superfamily (IPR036093),NAC domain (IPR003441);NIAS_FLcDNA=J013036M14;Manual Curation=January 5%2C 2018;Literature_PMID=24604734;Oryzabase=15820;Expression=AK120197;TENOR=Os08t0200600-01;KEGG=Os08t0200600-01;Subcellular location=nucleus (GO:0005634)
Chr08	irgsp1_rep	five_prime_UTR	5850562	5850647	.	-	.	Parent=Os08t0200600-01
Chr08	irgsp1_rep	CDS	5850366	5850561	.	-	0	Parent=Os08t0200600-01
Chr08	irgsp1_rep	CDS	5849043	5849341	.	-	2	Parent=Os08t0200600-01
Chr08	irgsp1_rep	CDS	5847211	5847597	.	-	0	Parent=Os08t0200600-01
Chr08	irgsp1_rep	three_prime_UTR	5846868	5847210	.	-	.	Parent=Os08t0200600-01
Chr08	irgsp1_rep	mRNA	5846866	5848643	.	-	.	ID=Os08t0200600-02;Name=Os08t0200600-02;Locus_id=Os08g0200600;CGSNL Gene Symbol=NAC104;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 104;Oryzabase Gene Symbol Synonym(s)=OMTN6%2C ONAC104%2C DLN206%2C OsDLN206;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 104%2C NAC domain-containing protein 104%2C miR164-targeted NAC6%2C Oryza miR164-targeted NAC6%2C DLN repressor 206%2C DLN motif protein 206;Note=Hypothetical conserved gene.;Transcript_evidence=AK105596 (DDBJ%2C Best hit);ORF_evidence=A3BQJ7 (UniProt);NIAS_FLcDNA=001-200-A01;Oryzabase=15820;Expression=AK105596;TENOR=Os08t0200600-02;KEGG=Os08t0200600-02
Chr08	irgsp1_rep	five_prime_UTR	5847619	5848643	.	-	.	Parent=Os08t0200600-02
Chr08	irgsp1_rep	CDS	5847211	5847618	.	-	0	Parent=Os08t0200600-02
Chr08	irgsp1_rep	three_prime_UTR	5846866	5847210	.	-	.	Parent=Os08t0200600-02
Chr08	irgsp1_rep	mRNA	5846926	5850631	.	+	.	ID=Os08t0200750-00;Name=Os08t0200750-00;Locus_id=Os08g0200750;Note=Hypothetical protein.;Transcript_evidence=tplb0047b04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0200750-00
Chr08	irgsp1_rep	five_prime_UTR	5846926	5847044	.	+	.	Parent=Os08t0200750-00
Chr08	irgsp1_rep	CDS	5847045	5847305	.	+	0	Parent=Os08t0200750-00
Chr08	irgsp1_rep	three_prime_UTR	5847306	5847713	.	+	.	Parent=Os08t0200750-00
Chr08	irgsp1_rep	three_prime_UTR	5847765	5848561	.	+	.	Parent=Os08t0200750-00
Chr08	irgsp1_rep	three_prime_UTR	5848860	5849539	.	+	.	Parent=Os08t0200750-00
Chr08	irgsp1_rep	three_prime_UTR	5850140	5850631	.	+	.	Parent=Os08t0200750-00
Chr08	irgsp1_rep	mRNA	5864931	5865851	.	-	.	ID=Os08t0201100-01;Name=Os08t0201100-01;Locus_id=Os08g0201100;Note=Conserved hypothetical protein.;Transcript_evidence=AK243452 (DDBJ%2C Best hit);ORF_evidence=NP_001175429.1 (RefSeq);NIAS_FLcDNA=J100070E23;TENOR=Os08t0201100-01;KEGG=Os08t0201100-01
Chr08	irgsp1_rep	five_prime_UTR	5865841	5865851	.	-	.	Parent=Os08t0201100-01
Chr08	irgsp1_rep	CDS	5865289	5865840	.	-	0	Parent=Os08t0201100-01
Chr08	irgsp1_rep	three_prime_UTR	5864931	5865288	.	-	.	Parent=Os08t0201100-01
Chr08	irgsp1_rep	mRNA	5878083	5879812	.	+	.	ID=Os08t0201500-01;Name=Os08t0201500-01;Locus_id=Os08g0201500;Note=Similar to SHR5-receptor-like kinase (Fragment).;Transcript_evidence=AK240815 (DDBJ%2C Best hit);ORF_evidence=Q4PLL4 (UniProt);NIAS_FLcDNA=J065008G20;TENOR=Os08t0201500-01;KEGG=Os08t0201500-01
Chr08	irgsp1_rep	five_prime_UTR	5878083	5878227	.	+	.	Parent=Os08t0201500-01
Chr08	irgsp1_rep	five_prime_UTR	5879066	5879194	.	+	.	Parent=Os08t0201500-01
Chr08	irgsp1_rep	CDS	5879195	5879354	.	+	0	Parent=Os08t0201500-01
Chr08	irgsp1_rep	CDS	5879433	5879626	.	+	2	Parent=Os08t0201500-01
Chr08	irgsp1_rep	three_prime_UTR	5879627	5879812	.	+	.	Parent=Os08t0201500-01
Chr08	irgsp1_rep	mRNA	5893368	5893829	.	-	.	ID=Os08t0201600-00;Name=Os08t0201600-00;Locus_id=Os08g0201600;Note=Non-protein coding transcript.;Transcript_evidence=EU949024 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0201600-00
Chr08	irgsp1_rep	exon	5893368	5893829	.	-	.	Parent=Os08t0201600-00
Chr08	irgsp1_rep	mRNA	5893697	5894289	.	+	.	ID=Os08t0201700-00;Name=Os08t0201700-00;Locus_id=Os08g0201700;Note=Protein kinase-like domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FZJ5 (UniProt);GO=Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009);TENOR=Os08t0201700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	5893697	5893819	.	+	0	Parent=Os08t0201700-00
Chr08	irgsp1_rep	CDS	5893891	5894289	.	+	0	Parent=Os08t0201700-00
Chr08	irgsp1_rep	mRNA	5938279	5939791	.	-	.	ID=Os08t0202200-01;Name=Os08t0202200-01;Locus_id=Os08g0202200;Note=Conserved hypothetical protein.;Transcript_evidence=AK058765 (DDBJ%2C Best hit);ORF_evidence=B9FZJ6 (UniProt);NIAS_FLcDNA=001-001-D08;TENOR=Os08t0202200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	5939791	5939791	.	-	.	Parent=Os08t0202200-01
Chr08	irgsp1_rep	CDS	5939682	5939790	.	-	0	Parent=Os08t0202200-01
Chr08	irgsp1_rep	CDS	5939592	5939602	.	-	2	Parent=Os08t0202200-01
Chr08	irgsp1_rep	three_prime_UTR	5939561	5939591	.	-	.	Parent=Os08t0202200-01
Chr08	irgsp1_rep	three_prime_UTR	5938279	5938623	.	-	.	Parent=Os08t0202200-01
Chr08	irgsp1_rep	mRNA	5942660	5944135	.	+	.	ID=Os08t0202300-01;Name=Os08t0202300-01;Locus_id=Os08g0202300;Note=Hypothetical conserved gene.;Transcript_evidence=AK064482 (DDBJ%2C Best hit);ORF_evidence=B9FZJ7 (UniProt);NIAS_FLcDNA=002-111-A12;Expression=AK064482;TENOR=Os08t0202300-01;KEGG=Os08t0202300-01
Chr08	irgsp1_rep	five_prime_UTR	5942660	5942666	.	+	.	Parent=Os08t0202300-01
Chr08	irgsp1_rep	CDS	5942667	5942891	.	+	0	Parent=Os08t0202300-01
Chr08	irgsp1_rep	three_prime_UTR	5942892	5944135	.	+	.	Parent=Os08t0202300-01
Chr08	irgsp1_rep	mRNA	5942661	5960134	.	+	.	ID=Os08t0202300-02;Name=Os08t0202300-02;Locus_id=Os08g0202300;Note=Conserved hypothetical protein.;Transcript_evidence=AK120351 (DDBJ%2C Best hit);ORF_evidence=Q7F109 (UniProt);NIAS_FLcDNA=J013065M07;TENOR=Os08t0202300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	5942661	5942853	.	+	.	Parent=Os08t0202300-02
Chr08	irgsp1_rep	five_prime_UTR	5951166	5951355	.	+	.	Parent=Os08t0202300-02
Chr08	irgsp1_rep	five_prime_UTR	5951646	5951717	.	+	.	Parent=Os08t0202300-02
Chr08	irgsp1_rep	five_prime_UTR	5952293	5952364	.	+	.	Parent=Os08t0202300-02
Chr08	irgsp1_rep	five_prime_UTR	5952493	5953440	.	+	.	Parent=Os08t0202300-02
Chr08	irgsp1_rep	CDS	5953441	5953586	.	+	0	Parent=Os08t0202300-02
Chr08	irgsp1_rep	CDS	5953748	5953819	.	+	1	Parent=Os08t0202300-02
Chr08	irgsp1_rep	CDS	5953908	5954019	.	+	1	Parent=Os08t0202300-02
Chr08	irgsp1_rep	three_prime_UTR	5954020	5954145	.	+	.	Parent=Os08t0202300-02
Chr08	irgsp1_rep	three_prime_UTR	5954285	5954356	.	+	.	Parent=Os08t0202300-02
Chr08	irgsp1_rep	three_prime_UTR	5954455	5954520	.	+	.	Parent=Os08t0202300-02
Chr08	irgsp1_rep	three_prime_UTR	5954702	5954770	.	+	.	Parent=Os08t0202300-02
Chr08	irgsp1_rep	three_prime_UTR	5954903	5954947	.	+	.	Parent=Os08t0202300-02
Chr08	irgsp1_rep	three_prime_UTR	5955028	5955092	.	+	.	Parent=Os08t0202300-02
Chr08	irgsp1_rep	three_prime_UTR	5955182	5955561	.	+	.	Parent=Os08t0202300-02
Chr08	irgsp1_rep	three_prime_UTR	5955689	5955890	.	+	.	Parent=Os08t0202300-02
Chr08	irgsp1_rep	three_prime_UTR	5955985	5956514	.	+	.	Parent=Os08t0202300-02
Chr08	irgsp1_rep	three_prime_UTR	5958584	5958800	.	+	.	Parent=Os08t0202300-02
Chr08	irgsp1_rep	three_prime_UTR	5958893	5959124	.	+	.	Parent=Os08t0202300-02
Chr08	irgsp1_rep	three_prime_UTR	5959212	5959362	.	+	.	Parent=Os08t0202300-02
Chr08	irgsp1_rep	three_prime_UTR	5959433	5960134	.	+	.	Parent=Os08t0202300-02
Chr08	irgsp1_rep	mRNA	5942755	5949448	.	+	.	ID=Os08t0202300-03;Name=Os08t0202300-03;Locus_id=Os08g0202300;Note=Reverse transcriptase domain containing protein.;Transcript_evidence=AK067237 (DDBJ%2C Best hit);ORF_evidence=Q7XW39 (UniProt);GO=Biological Process: RNA-dependent DNA replication (GO:0006278),Molecular Function: RNA binding (GO:0003723),Molecular Function: RNA-directed DNA polymerase activity (GO:0003964);InterPro=Reverse transcriptase (IPR000477);NIAS_FLcDNA=J013095L20;TENOR=Os08t0202300-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	5942755	5942853	.	+	.	Parent=Os08t0202300-03
Chr08	irgsp1_rep	five_prime_UTR	5946619	5947675	.	+	.	Parent=Os08t0202300-03
Chr08	irgsp1_rep	CDS	5947676	5949448	.	+	0	Parent=Os08t0202300-03
Chr08	irgsp1_rep	mRNA	5950971	5956161	.	+	.	ID=Os08t0202300-04;Name=Os08t0202300-04;Locus_id=Os08g0202300;Note=Similar to SHR5-receptor-like kinase (Fragment).;Transcript_evidence=AK109601 (DDBJ%2C Best hit);ORF_evidence=Q4PLL4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Malectin (IPR021720);NIAS_FLcDNA=002-137-E08;TENOR=Os08t0202300-04;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	5950971	5951122	.	+	.	Parent=Os08t0202300-04
Chr08	irgsp1_rep	CDS	5951123	5951355	.	+	0	Parent=Os08t0202300-04
Chr08	irgsp1_rep	CDS	5951646	5951717	.	+	1	Parent=Os08t0202300-04
Chr08	irgsp1_rep	CDS	5952293	5952364	.	+	1	Parent=Os08t0202300-04
Chr08	irgsp1_rep	CDS	5952493	5952564	.	+	1	Parent=Os08t0202300-04
Chr08	irgsp1_rep	CDS	5953515	5953586	.	+	1	Parent=Os08t0202300-04
Chr08	irgsp1_rep	CDS	5953748	5953819	.	+	1	Parent=Os08t0202300-04
Chr08	irgsp1_rep	CDS	5953908	5953979	.	+	1	Parent=Os08t0202300-04
Chr08	irgsp1_rep	CDS	5954071	5954145	.	+	1	Parent=Os08t0202300-04
Chr08	irgsp1_rep	CDS	5954285	5954356	.	+	1	Parent=Os08t0202300-04
Chr08	irgsp1_rep	CDS	5954455	5954520	.	+	1	Parent=Os08t0202300-04
Chr08	irgsp1_rep	CDS	5954702	5954770	.	+	1	Parent=Os08t0202300-04
Chr08	irgsp1_rep	CDS	5954903	5954947	.	+	1	Parent=Os08t0202300-04
Chr08	irgsp1_rep	CDS	5955028	5955092	.	+	1	Parent=Os08t0202300-04
Chr08	irgsp1_rep	CDS	5955182	5955561	.	+	2	Parent=Os08t0202300-04
Chr08	irgsp1_rep	CDS	5955689	5955890	.	+	0	Parent=Os08t0202300-04
Chr08	irgsp1_rep	CDS	5955985	5956157	.	+	2	Parent=Os08t0202300-04
Chr08	irgsp1_rep	three_prime_UTR	5956158	5956161	.	+	.	Parent=Os08t0202300-04
Chr08	irgsp1_rep	mRNA	5958903	5959364	.	-	.	ID=Os08t0202350-00;Name=Os08t0202350-00;Locus_id=Os08g0202350;Note=Non-protein coding transcript.;Transcript_evidence=EU949024 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0202350-00
Chr08	irgsp1_rep	exon	5958903	5959364	.	-	.	Parent=Os08t0202350-00
Chr08	irgsp1_rep	mRNA	5964506	5968143	.	-	.	ID=Os08t0202400-01;Name=Os08t0202400-01;Locus_id=Os08g0202400;Note=Disease resistance protein domain containing protein.;Transcript_evidence=AK070769 (DDBJ%2C Best hit);ORF_evidence=B9FZK0 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J023069F16;TENOR=Os08t0202400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	5968052	5968143	.	-	.	Parent=Os08t0202400-01
Chr08	irgsp1_rep	CDS	5967954	5968051	.	-	0	Parent=Os08t0202400-01
Chr08	irgsp1_rep	CDS	5967051	5967869	.	-	1	Parent=Os08t0202400-01
Chr08	irgsp1_rep	CDS	5964506	5966597	.	-	1	Parent=Os08t0202400-01
Chr08	irgsp1_rep	mRNA	5970251	5970875	.	-	.	ID=Os08t0202500-01;Name=Os08t0202500-01;Locus_id=Os08g0202500;Note=Conserved hypothetical protein.;Transcript_evidence=AK108353 (DDBJ%2C Best hit);ORF_evidence=B9FZK0 (UniProt);NIAS_FLcDNA=002-142-C02;TENOR=Os08t0202500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	5970555	5970875	.	-	0	Parent=Os08t0202500-01
Chr08	irgsp1_rep	three_prime_UTR	5970251	5970554	.	-	.	Parent=Os08t0202500-01
Chr08	irgsp1_rep	mRNA	5982519	5985990	.	+	.	ID=Os08t0203100-01;Name=Os08t0203100-01;Locus_id=Os08g0203100;Note=Hypothetical conserved gene.;Transcript_evidence=AK241219 (DDBJ%2C Best hit);ORF_evidence=B9FZK3 (UniProt);NIAS_FLcDNA=J065123I23;TENOR=Os08t0203100-01;KEGG=Os08t0203100-01
Chr08	irgsp1_rep	CDS	5982519	5982715	.	+	0	Parent=Os08t0203100-01
Chr08	irgsp1_rep	CDS	5983003	5983074	.	+	1	Parent=Os08t0203100-01
Chr08	irgsp1_rep	CDS	5983297	5983368	.	+	1	Parent=Os08t0203100-01
Chr08	irgsp1_rep	CDS	5983470	5983541	.	+	1	Parent=Os08t0203100-01
Chr08	irgsp1_rep	CDS	5983826	5983897	.	+	1	Parent=Os08t0203100-01
Chr08	irgsp1_rep	CDS	5984032	5984200	.	+	1	Parent=Os08t0203100-01
Chr08	irgsp1_rep	three_prime_UTR	5984201	5985105	.	+	.	Parent=Os08t0203100-01
Chr08	irgsp1_rep	three_prime_UTR	5985199	5985270	.	+	.	Parent=Os08t0203100-01
Chr08	irgsp1_rep	three_prime_UTR	5985361	5985435	.	+	.	Parent=Os08t0203100-01
Chr08	irgsp1_rep	three_prime_UTR	5985540	5985611	.	+	.	Parent=Os08t0203100-01
Chr08	irgsp1_rep	three_prime_UTR	5985705	5985990	.	+	.	Parent=Os08t0203100-01
Chr08	irgsp1_rep	mRNA	5987781	5988339	.	-	.	ID=Os08t0203150-00;Name=Os08t0203150-00;Locus_id=Os08g0203150;Note=Hypothetical gene.;Transcript_evidence=EU949024 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0203150-00;KEGG=Os08t0203150-00
Chr08	irgsp1_rep	five_prime_UTR	5988251	5988339	.	-	.	Parent=Os08t0203150-00
Chr08	irgsp1_rep	CDS	5987999	5988250	.	-	0	Parent=Os08t0203150-00
Chr08	irgsp1_rep	three_prime_UTR	5987781	5987998	.	-	.	Parent=Os08t0203150-00
Chr08	irgsp1_rep	mRNA	5988432	5988931	.	+	.	ID=Os08t0203201-00;Name=Os08t0203201-00;Locus_id=Os08g0203201;Note=Similar to SHR5-receptor-like kinase (Fragment).;Transcript_evidence=CT837910 (DDBJ%2C Best hit);ORF_evidence=Q4PLL4 (UniProt);TENOR=Os08t0203201-00;KEGG=Os08t0203201-00
Chr08	irgsp1_rep	five_prime_UTR	5988432	5988432	.	+	.	Parent=Os08t0203201-00
Chr08	irgsp1_rep	CDS	5988433	5988795	.	+	0	Parent=Os08t0203201-00
Chr08	irgsp1_rep	three_prime_UTR	5988796	5988931	.	+	.	Parent=Os08t0203201-00
Chr08	irgsp1_rep	mRNA	5998167	6005500	.	+	.	ID=Os08t0203300-01;Name=Os08t0203300-01;Locus_id=Os08g0203300;Note=Similar to SHR5-receptor-like kinase (Fragment).;Transcript_evidence=AK065548 (DDBJ%2C Best hit);ORF_evidence=Q4PLL4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=J013027M05;TENOR=Os08t0203300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	5998167	5998248	.	+	.	Parent=Os08t0203300-01
Chr08	irgsp1_rep	CDS	5998249	5998399	.	+	0	Parent=Os08t0203300-01
Chr08	irgsp1_rep	CDS	5999606	5999795	.	+	2	Parent=Os08t0203300-01
Chr08	irgsp1_rep	CDS	6000045	6000116	.	+	1	Parent=Os08t0203300-01
Chr08	irgsp1_rep	CDS	6000360	6000428	.	+	1	Parent=Os08t0203300-01
Chr08	irgsp1_rep	CDS	6000533	6000604	.	+	1	Parent=Os08t0203300-01
Chr08	irgsp1_rep	CDS	6000784	6000855	.	+	1	Parent=Os08t0203300-01
Chr08	irgsp1_rep	CDS	6000967	6001038	.	+	1	Parent=Os08t0203300-01
Chr08	irgsp1_rep	CDS	6001121	6001192	.	+	1	Parent=Os08t0203300-01
Chr08	irgsp1_rep	CDS	6001461	6001532	.	+	1	Parent=Os08t0203300-01
Chr08	irgsp1_rep	CDS	6001620	6001691	.	+	1	Parent=Os08t0203300-01
Chr08	irgsp1_rep	CDS	6001796	6001870	.	+	1	Parent=Os08t0203300-01
Chr08	irgsp1_rep	CDS	6001979	6002050	.	+	1	Parent=Os08t0203300-01
Chr08	irgsp1_rep	CDS	6002145	6002337	.	+	1	Parent=Os08t0203300-01
Chr08	irgsp1_rep	three_prime_UTR	6002338	6002349	.	+	.	Parent=Os08t0203300-01
Chr08	irgsp1_rep	three_prime_UTR	6002456	6002500	.	+	.	Parent=Os08t0203300-01
Chr08	irgsp1_rep	three_prime_UTR	6002584	6002648	.	+	.	Parent=Os08t0203300-01
Chr08	irgsp1_rep	three_prime_UTR	6002746	6003125	.	+	.	Parent=Os08t0203300-01
Chr08	irgsp1_rep	three_prime_UTR	6003216	6003414	.	+	.	Parent=Os08t0203300-01
Chr08	irgsp1_rep	three_prime_UTR	6003495	6003653	.	+	.	Parent=Os08t0203300-01
Chr08	irgsp1_rep	three_prime_UTR	6003735	6003853	.	+	.	Parent=Os08t0203300-01
Chr08	irgsp1_rep	three_prime_UTR	6003985	6004195	.	+	.	Parent=Os08t0203300-01
Chr08	irgsp1_rep	three_prime_UTR	6004303	6004534	.	+	.	Parent=Os08t0203300-01
Chr08	irgsp1_rep	three_prime_UTR	6004616	6004766	.	+	.	Parent=Os08t0203300-01
Chr08	irgsp1_rep	three_prime_UTR	6004861	6005500	.	+	.	Parent=Os08t0203300-01
Chr08	irgsp1_rep	mRNA	6004271	6004772	.	-	.	ID=Os08t0203325-00;Name=Os08t0203325-00;Locus_id=Os08g0203325;Note=Non-protein coding transcript.;Transcript_evidence=EU949024 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0203325-00
Chr08	irgsp1_rep	exon	6004271	6004772	.	-	.	Parent=Os08t0203325-00
Chr08	irgsp1_rep	mRNA	6006493	6007052	.	-	.	ID=Os08t0203350-01;Name=Os08t0203350-01;Locus_id=Os08g0203350;Note=Conserved hypothetical protein.;Transcript_evidence=AK241579 (DDBJ%2C Best hit);ORF_evidence=NP_001175431.1 (RefSeq);NIAS_FLcDNA=J065181E13;TENOR=Os08t0203350-01;KEGG=Os08t0203350-01
Chr08	irgsp1_rep	five_prime_UTR	6006975	6007052	.	-	.	Parent=Os08t0203350-01
Chr08	irgsp1_rep	CDS	6006735	6006974	.	-	0	Parent=Os08t0203350-01
Chr08	irgsp1_rep	three_prime_UTR	6006493	6006734	.	-	.	Parent=Os08t0203350-01
Chr08	irgsp1_rep	mRNA	6015745	6023225	.	+	.	ID=Os08t0203400-01;Name=Os08t0203400-01;Locus_id=Os08g0203400;Oryzabase Gene Symbol Synonym(s)=SHR5;Oryzabase Gene Name Synonym(s)=Protein kinase (Leucine-rich repeat receptor like kinase);Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK068816 (DDBJ%2C Best hit);ORF_evidence=Q4PLL4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Malectin (IPR021720);NIAS_FLcDNA=J013162L02;Oryzabase=20461;Expression=AK068816;TENOR=Os08t0203400-01;KEGG=Os08t0203400-01
Chr08	irgsp1_rep	five_prime_UTR	6015745	6015817	.	+	.	Parent=Os08t0203400-01
Chr08	irgsp1_rep	CDS	6015818	6015926	.	+	0	Parent=Os08t0203400-01
Chr08	irgsp1_rep	CDS	6016059	6016248	.	+	2	Parent=Os08t0203400-01
Chr08	irgsp1_rep	CDS	6017756	6017827	.	+	1	Parent=Os08t0203400-01
Chr08	irgsp1_rep	CDS	6017988	6018059	.	+	1	Parent=Os08t0203400-01
Chr08	irgsp1_rep	CDS	6018150	6018221	.	+	1	Parent=Os08t0203400-01
Chr08	irgsp1_rep	CDS	6018627	6018698	.	+	1	Parent=Os08t0203400-01
Chr08	irgsp1_rep	CDS	6018823	6018894	.	+	1	Parent=Os08t0203400-01
Chr08	irgsp1_rep	CDS	6018978	6019049	.	+	1	Parent=Os08t0203400-01
Chr08	irgsp1_rep	CDS	6019308	6019379	.	+	1	Parent=Os08t0203400-01
Chr08	irgsp1_rep	CDS	6019456	6019527	.	+	1	Parent=Os08t0203400-01
Chr08	irgsp1_rep	CDS	6019619	6019693	.	+	1	Parent=Os08t0203400-01
Chr08	irgsp1_rep	CDS	6019797	6019868	.	+	1	Parent=Os08t0203400-01
Chr08	irgsp1_rep	CDS	6019963	6020028	.	+	1	Parent=Os08t0203400-01
Chr08	irgsp1_rep	CDS	6020096	6020161	.	+	1	Parent=Os08t0203400-01
Chr08	irgsp1_rep	CDS	6020236	6020280	.	+	1	Parent=Os08t0203400-01
Chr08	irgsp1_rep	CDS	6020367	6020431	.	+	1	Parent=Os08t0203400-01
Chr08	irgsp1_rep	CDS	6020523	6020902	.	+	2	Parent=Os08t0203400-01
Chr08	irgsp1_rep	CDS	6020986	6021184	.	+	0	Parent=Os08t0203400-01
Chr08	irgsp1_rep	CDS	6021254	6021412	.	+	2	Parent=Os08t0203400-01
Chr08	irgsp1_rep	CDS	6021500	6021618	.	+	2	Parent=Os08t0203400-01
Chr08	irgsp1_rep	CDS	6021747	6021957	.	+	0	Parent=Os08t0203400-01
Chr08	irgsp1_rep	CDS	6022086	6022317	.	+	2	Parent=Os08t0203400-01
Chr08	irgsp1_rep	CDS	6022397	6022547	.	+	1	Parent=Os08t0203400-01
Chr08	irgsp1_rep	CDS	6022650	6023009	.	+	0	Parent=Os08t0203400-01
Chr08	irgsp1_rep	three_prime_UTR	6023010	6023225	.	+	.	Parent=Os08t0203400-01
Chr08	irgsp1_rep	mRNA	6022081	6022579	.	-	.	ID=Os08t0203501-00;Name=Os08t0203501-00;Locus_id=Os08g0203501;Note=Non-protein coding transcript.;Transcript_evidence=EU949024 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0203501-00
Chr08	irgsp1_rep	exon	6022081	6022579	.	-	.	Parent=Os08t0203501-00
Chr08	irgsp1_rep	mRNA	6032208	6038997	.	+	.	ID=Os08t0203600-01;Name=Os08t0203600-01;Locus_id=Os08g0203600;Note=Hypothetical conserved gene.;Transcript_evidence=AK067350 (DDBJ%2C Best hit);ORF_evidence=B9FZK5 (UniProt);NIAS_FLcDNA=J013102L20;Expression=AK067350;TENOR=Os08t0203600-01;KEGG=Os08t0203600-01
Chr08	irgsp1_rep	five_prime_UTR	6032208	6032316	.	+	.	Parent=Os08t0203600-01
Chr08	irgsp1_rep	CDS	6032317	6032416	.	+	0	Parent=Os08t0203600-01
Chr08	irgsp1_rep	CDS	6032510	6032699	.	+	2	Parent=Os08t0203600-01
Chr08	irgsp1_rep	CDS	6033305	6033376	.	+	1	Parent=Os08t0203600-01
Chr08	irgsp1_rep	CDS	6033529	6033600	.	+	1	Parent=Os08t0203600-01
Chr08	irgsp1_rep	CDS	6033696	6033767	.	+	1	Parent=Os08t0203600-01
Chr08	irgsp1_rep	CDS	6034126	6034197	.	+	1	Parent=Os08t0203600-01
Chr08	irgsp1_rep	CDS	6034322	6034393	.	+	1	Parent=Os08t0203600-01
Chr08	irgsp1_rep	CDS	6034476	6034551	.	+	1	Parent=Os08t0203600-01
Chr08	irgsp1_rep	three_prime_UTR	6034552	6035383	.	+	.	Parent=Os08t0203600-01
Chr08	irgsp1_rep	three_prime_UTR	6035476	6035674	.	+	.	Parent=Os08t0203600-01
Chr08	irgsp1_rep	three_prime_UTR	6035751	6035795	.	+	.	Parent=Os08t0203600-01
Chr08	irgsp1_rep	three_prime_UTR	6035884	6035948	.	+	.	Parent=Os08t0203600-01
Chr08	irgsp1_rep	three_prime_UTR	6036039	6036418	.	+	.	Parent=Os08t0203600-01
Chr08	irgsp1_rep	three_prime_UTR	6036797	6036995	.	+	.	Parent=Os08t0203600-01
Chr08	irgsp1_rep	three_prime_UTR	6037067	6037225	.	+	.	Parent=Os08t0203600-01
Chr08	irgsp1_rep	three_prime_UTR	6037308	6037426	.	+	.	Parent=Os08t0203600-01
Chr08	irgsp1_rep	three_prime_UTR	6037568	6037778	.	+	.	Parent=Os08t0203600-01
Chr08	irgsp1_rep	three_prime_UTR	6037902	6038133	.	+	.	Parent=Os08t0203600-01
Chr08	irgsp1_rep	three_prime_UTR	6038213	6038363	.	+	.	Parent=Os08t0203600-01
Chr08	irgsp1_rep	three_prime_UTR	6038459	6038997	.	+	.	Parent=Os08t0203600-01
Chr08	irgsp1_rep	mRNA	6032289	6039069	.	+	.	ID=Os08t0203600-02;Name=Os08t0203600-02;Locus_id=Os08g0203600;Note=Hypothetical conserved gene.;Transcript_evidence=AK064968 (DDBJ%2C Best hit);ORF_evidence=B9FZK5 (UniProt);NIAS_FLcDNA=J013001B05;TENOR=Os08t0203600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	6032289	6032316	.	+	.	Parent=Os08t0203600-02
Chr08	irgsp1_rep	CDS	6032317	6032416	.	+	0	Parent=Os08t0203600-02
Chr08	irgsp1_rep	CDS	6032510	6032699	.	+	2	Parent=Os08t0203600-02
Chr08	irgsp1_rep	CDS	6033305	6033376	.	+	1	Parent=Os08t0203600-02
Chr08	irgsp1_rep	CDS	6033529	6033600	.	+	1	Parent=Os08t0203600-02
Chr08	irgsp1_rep	CDS	6033696	6033767	.	+	1	Parent=Os08t0203600-02
Chr08	irgsp1_rep	CDS	6034126	6034197	.	+	1	Parent=Os08t0203600-02
Chr08	irgsp1_rep	CDS	6034322	6034393	.	+	1	Parent=Os08t0203600-02
Chr08	irgsp1_rep	CDS	6034476	6034551	.	+	1	Parent=Os08t0203600-02
Chr08	irgsp1_rep	three_prime_UTR	6034552	6034896	.	+	.	Parent=Os08t0203600-02
Chr08	irgsp1_rep	three_prime_UTR	6034973	6035044	.	+	.	Parent=Os08t0203600-02
Chr08	irgsp1_rep	three_prime_UTR	6035133	6035207	.	+	.	Parent=Os08t0203600-02
Chr08	irgsp1_rep	three_prime_UTR	6035312	6035383	.	+	.	Parent=Os08t0203600-02
Chr08	irgsp1_rep	three_prime_UTR	6035476	6035541	.	+	.	Parent=Os08t0203600-02
Chr08	irgsp1_rep	three_prime_UTR	6035609	6035674	.	+	.	Parent=Os08t0203600-02
Chr08	irgsp1_rep	three_prime_UTR	6035751	6035948	.	+	.	Parent=Os08t0203600-02
Chr08	irgsp1_rep	three_prime_UTR	6036039	6036418	.	+	.	Parent=Os08t0203600-02
Chr08	irgsp1_rep	three_prime_UTR	6036797	6036995	.	+	.	Parent=Os08t0203600-02
Chr08	irgsp1_rep	three_prime_UTR	6037067	6037225	.	+	.	Parent=Os08t0203600-02
Chr08	irgsp1_rep	three_prime_UTR	6037308	6037426	.	+	.	Parent=Os08t0203600-02
Chr08	irgsp1_rep	three_prime_UTR	6037568	6037778	.	+	.	Parent=Os08t0203600-02
Chr08	irgsp1_rep	three_prime_UTR	6037902	6038133	.	+	.	Parent=Os08t0203600-02
Chr08	irgsp1_rep	three_prime_UTR	6038213	6038363	.	+	.	Parent=Os08t0203600-02
Chr08	irgsp1_rep	three_prime_UTR	6038459	6039069	.	+	.	Parent=Os08t0203600-02
Chr08	irgsp1_rep	mRNA	6032290	6039029	.	+	.	ID=Os08t0203600-03;Name=Os08t0203600-03;Locus_id=Os08g0203600;Note=Hypothetical conserved gene.;Transcript_evidence=AK072136 (DDBJ%2C Best hit);ORF_evidence=B9FZK5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=J013129C05;Expression=AK072136;TENOR=Os08t0203600-03;KEGG=Os08t0203600-03
Chr08	irgsp1_rep	five_prime_UTR	6032290	6032316	.	+	.	Parent=Os08t0203600-03
Chr08	irgsp1_rep	CDS	6032317	6032416	.	+	0	Parent=Os08t0203600-03
Chr08	irgsp1_rep	CDS	6032510	6032699	.	+	2	Parent=Os08t0203600-03
Chr08	irgsp1_rep	CDS	6033305	6033376	.	+	1	Parent=Os08t0203600-03
Chr08	irgsp1_rep	CDS	6033529	6033600	.	+	1	Parent=Os08t0203600-03
Chr08	irgsp1_rep	CDS	6033696	6033767	.	+	1	Parent=Os08t0203600-03
Chr08	irgsp1_rep	CDS	6034126	6034197	.	+	1	Parent=Os08t0203600-03
Chr08	irgsp1_rep	CDS	6034322	6034393	.	+	1	Parent=Os08t0203600-03
Chr08	irgsp1_rep	CDS	6034476	6034547	.	+	1	Parent=Os08t0203600-03
Chr08	irgsp1_rep	CDS	6034825	6034896	.	+	1	Parent=Os08t0203600-03
Chr08	irgsp1_rep	CDS	6035133	6035207	.	+	1	Parent=Os08t0203600-03
Chr08	irgsp1_rep	CDS	6035312	6035383	.	+	1	Parent=Os08t0203600-03
Chr08	irgsp1_rep	CDS	6035476	6035575	.	+	1	Parent=Os08t0203600-03
Chr08	irgsp1_rep	three_prime_UTR	6035576	6035674	.	+	.	Parent=Os08t0203600-03
Chr08	irgsp1_rep	three_prime_UTR	6035751	6035795	.	+	.	Parent=Os08t0203600-03
Chr08	irgsp1_rep	three_prime_UTR	6035868	6035948	.	+	.	Parent=Os08t0203600-03
Chr08	irgsp1_rep	three_prime_UTR	6036039	6036418	.	+	.	Parent=Os08t0203600-03
Chr08	irgsp1_rep	three_prime_UTR	6036797	6036995	.	+	.	Parent=Os08t0203600-03
Chr08	irgsp1_rep	three_prime_UTR	6037067	6037225	.	+	.	Parent=Os08t0203600-03
Chr08	irgsp1_rep	three_prime_UTR	6037308	6037426	.	+	.	Parent=Os08t0203600-03
Chr08	irgsp1_rep	three_prime_UTR	6037568	6037778	.	+	.	Parent=Os08t0203600-03
Chr08	irgsp1_rep	three_prime_UTR	6037902	6038133	.	+	.	Parent=Os08t0203600-03
Chr08	irgsp1_rep	three_prime_UTR	6038213	6038363	.	+	.	Parent=Os08t0203600-03
Chr08	irgsp1_rep	three_prime_UTR	6038459	6039029	.	+	.	Parent=Os08t0203600-03
Chr08	irgsp1_rep	mRNA	6034299	6039031	.	+	.	ID=Os08t0203600-04;Name=Os08t0203600-04;Locus_id=Os08g0203600;Note=Similar to SHR5-receptor-like kinase (Fragment).;Transcript_evidence=AK066222 (DDBJ%2C Best hit);ORF_evidence=Q4PLL4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=J013052F21;TENOR=Os08t0203600-04;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	6034299	6034393	.	+	.	Parent=Os08t0203600-04
Chr08	irgsp1_rep	five_prime_UTR	6034476	6035094	.	+	.	Parent=Os08t0203600-04
Chr08	irgsp1_rep	CDS	6035095	6035207	.	+	0	Parent=Os08t0203600-04
Chr08	irgsp1_rep	CDS	6035312	6035383	.	+	1	Parent=Os08t0203600-04
Chr08	irgsp1_rep	CDS	6035476	6035575	.	+	1	Parent=Os08t0203600-04
Chr08	irgsp1_rep	three_prime_UTR	6035576	6035674	.	+	.	Parent=Os08t0203600-04
Chr08	irgsp1_rep	three_prime_UTR	6035751	6035795	.	+	.	Parent=Os08t0203600-04
Chr08	irgsp1_rep	three_prime_UTR	6035884	6035948	.	+	.	Parent=Os08t0203600-04
Chr08	irgsp1_rep	three_prime_UTR	6036039	6036418	.	+	.	Parent=Os08t0203600-04
Chr08	irgsp1_rep	three_prime_UTR	6036797	6036995	.	+	.	Parent=Os08t0203600-04
Chr08	irgsp1_rep	three_prime_UTR	6037067	6037225	.	+	.	Parent=Os08t0203600-04
Chr08	irgsp1_rep	three_prime_UTR	6037308	6037426	.	+	.	Parent=Os08t0203600-04
Chr08	irgsp1_rep	three_prime_UTR	6037568	6037778	.	+	.	Parent=Os08t0203600-04
Chr08	irgsp1_rep	three_prime_UTR	6037902	6038133	.	+	.	Parent=Os08t0203600-04
Chr08	irgsp1_rep	three_prime_UTR	6038213	6038363	.	+	.	Parent=Os08t0203600-04
Chr08	irgsp1_rep	three_prime_UTR	6038459	6039031	.	+	.	Parent=Os08t0203600-04
Chr08	irgsp1_rep	mRNA	6035581	6038974	.	+	.	ID=Os08t0203600-05;Name=Os08t0203600-05;Locus_id=Os08g0203600;Note=Similar to SHR5-receptor-like kinase (Fragment).;Transcript_evidence=AK066781 (DDBJ%2C Best hit);ORF_evidence=Q4PLL4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635),Malectin (IPR021720);NIAS_FLcDNA=J013075J09;Expression=AK066781;TENOR=Os08t0203600-05;KEGG=Os08t0203600-05
Chr08	irgsp1_rep	five_prime_UTR	6035581	6035582	.	+	.	Parent=Os08t0203600-05
Chr08	irgsp1_rep	CDS	6035583	6035674	.	+	0	Parent=Os08t0203600-05
Chr08	irgsp1_rep	CDS	6035751	6035795	.	+	1	Parent=Os08t0203600-05
Chr08	irgsp1_rep	CDS	6035884	6035948	.	+	1	Parent=Os08t0203600-05
Chr08	irgsp1_rep	CDS	6036039	6036418	.	+	2	Parent=Os08t0203600-05
Chr08	irgsp1_rep	CDS	6036797	6036995	.	+	0	Parent=Os08t0203600-05
Chr08	irgsp1_rep	CDS	6037067	6037225	.	+	2	Parent=Os08t0203600-05
Chr08	irgsp1_rep	CDS	6037308	6037426	.	+	2	Parent=Os08t0203600-05
Chr08	irgsp1_rep	CDS	6037568	6037778	.	+	0	Parent=Os08t0203600-05
Chr08	irgsp1_rep	CDS	6037902	6038133	.	+	2	Parent=Os08t0203600-05
Chr08	irgsp1_rep	CDS	6038213	6038363	.	+	1	Parent=Os08t0203600-05
Chr08	irgsp1_rep	CDS	6038459	6038800	.	+	0	Parent=Os08t0203600-05
Chr08	irgsp1_rep	three_prime_UTR	6038801	6038974	.	+	.	Parent=Os08t0203600-05
Chr08	irgsp1_rep	mRNA	6037728	6039051	.	+	.	ID=Os08t0203600-06;Name=Os08t0203600-06;Locus_id=Os08g0203600;Note=Similar to SHR5-receptor-like kinase (Fragment).;Transcript_evidence=AK062195 (DDBJ%2C Best hit);ORF_evidence=Q4PLL4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-046-F10;Expression=AK062195;TENOR=Os08t0203600-06;KEGG=Os08t0203600-06
Chr08	irgsp1_rep	five_prime_UTR	6037728	6037729	.	+	.	Parent=Os08t0203600-06
Chr08	irgsp1_rep	CDS	6037730	6037778	.	+	0	Parent=Os08t0203600-06
Chr08	irgsp1_rep	CDS	6037902	6038133	.	+	2	Parent=Os08t0203600-06
Chr08	irgsp1_rep	CDS	6038213	6038363	.	+	1	Parent=Os08t0203600-06
Chr08	irgsp1_rep	CDS	6038459	6038800	.	+	0	Parent=Os08t0203600-06
Chr08	irgsp1_rep	three_prime_UTR	6038801	6039051	.	+	.	Parent=Os08t0203600-06
Chr08	irgsp1_rep	mRNA	6037884	6038369	.	-	.	ID=Os08t0203650-00;Name=Os08t0203650-00;Locus_id=Os08g0203650;Note=Non-protein coding transcript.;Transcript_evidence=EU949024 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0203650-00
Chr08	irgsp1_rep	exon	6037884	6038369	.	-	.	Parent=Os08t0203650-00
Chr08	irgsp1_rep	mRNA	6040528	6048561	.	+	.	ID=Os08t0203700-01;Name=Os08t0203700-01;Locus_id=Os08g0203700;Oryzabase Gene Name Synonym(s)=SHR5-receptor-like kinase;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK100532 (DDBJ%2C Best hit);ORF_evidence=Q4PLL4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Malectin (IPR021720);NIAS_FLcDNA=J023101L18;Oryzabase=16792;Expression=AK100532;TENOR=Os08t0203700-01;KEGG=Os08t0203700-01
Chr08	irgsp1_rep	five_prime_UTR	6040528	6040603	.	+	.	Parent=Os08t0203700-01
Chr08	irgsp1_rep	CDS	6040604	6040712	.	+	0	Parent=Os08t0203700-01
Chr08	irgsp1_rep	CDS	6042195	6042381	.	+	2	Parent=Os08t0203700-01
Chr08	irgsp1_rep	CDS	6042631	6042702	.	+	1	Parent=Os08t0203700-01
Chr08	irgsp1_rep	CDS	6043408	6043479	.	+	1	Parent=Os08t0203700-01
Chr08	irgsp1_rep	CDS	6043594	6043665	.	+	1	Parent=Os08t0203700-01
Chr08	irgsp1_rep	CDS	6044029	6044100	.	+	1	Parent=Os08t0203700-01
Chr08	irgsp1_rep	CDS	6044209	6044280	.	+	1	Parent=Os08t0203700-01
Chr08	irgsp1_rep	CDS	6044361	6044432	.	+	1	Parent=Os08t0203700-01
Chr08	irgsp1_rep	CDS	6044680	6044751	.	+	1	Parent=Os08t0203700-01
Chr08	irgsp1_rep	CDS	6044834	6044905	.	+	1	Parent=Os08t0203700-01
Chr08	irgsp1_rep	CDS	6044993	6045067	.	+	1	Parent=Os08t0203700-01
Chr08	irgsp1_rep	CDS	6045157	6045228	.	+	1	Parent=Os08t0203700-01
Chr08	irgsp1_rep	CDS	6045330	6045395	.	+	1	Parent=Os08t0203700-01
Chr08	irgsp1_rep	CDS	6045505	6045570	.	+	1	Parent=Os08t0203700-01
Chr08	irgsp1_rep	CDS	6045690	6045734	.	+	1	Parent=Os08t0203700-01
Chr08	irgsp1_rep	CDS	6045811	6045875	.	+	1	Parent=Os08t0203700-01
Chr08	irgsp1_rep	CDS	6045957	6046336	.	+	2	Parent=Os08t0203700-01
Chr08	irgsp1_rep	CDS	6046412	6046610	.	+	0	Parent=Os08t0203700-01
Chr08	irgsp1_rep	CDS	6046696	6046854	.	+	2	Parent=Os08t0203700-01
Chr08	irgsp1_rep	CDS	6046941	6047059	.	+	2	Parent=Os08t0203700-01
Chr08	irgsp1_rep	CDS	6047147	6047357	.	+	0	Parent=Os08t0203700-01
Chr08	irgsp1_rep	CDS	6047497	6047728	.	+	2	Parent=Os08t0203700-01
Chr08	irgsp1_rep	CDS	6047811	6047961	.	+	1	Parent=Os08t0203700-01
Chr08	irgsp1_rep	CDS	6048067	6048426	.	+	0	Parent=Os08t0203700-01
Chr08	irgsp1_rep	three_prime_UTR	6048427	6048561	.	+	.	Parent=Os08t0203700-01
Chr08	irgsp1_rep	mRNA	6042084	6046131	.	+	.	ID=Os08t0203700-02;Name=Os08t0203700-02;Locus_id=Os08g0203700;Oryzabase Gene Name Synonym(s)=SHR5-receptor-like kinase;Note=Similar to SHR5-receptor-like kinase (Fragment).;Transcript_evidence=AK068147 (DDBJ%2C Best hit);ORF_evidence=B9FZK6 (UniProt);NIAS_FLcDNA=J013135P07;Oryzabase=16792;Expression=AK068147;TENOR=Os08t0203700-02;KEGG=Os08t0203700-02
Chr08	irgsp1_rep	five_prime_UTR	6042084	6042085	.	+	.	Parent=Os08t0203700-02
Chr08	irgsp1_rep	CDS	6042086	6042381	.	+	0	Parent=Os08t0203700-02
Chr08	irgsp1_rep	CDS	6042631	6042715	.	+	1	Parent=Os08t0203700-02
Chr08	irgsp1_rep	three_prime_UTR	6042716	6043479	.	+	.	Parent=Os08t0203700-02
Chr08	irgsp1_rep	three_prime_UTR	6043594	6043665	.	+	.	Parent=Os08t0203700-02
Chr08	irgsp1_rep	three_prime_UTR	6044029	6044100	.	+	.	Parent=Os08t0203700-02
Chr08	irgsp1_rep	three_prime_UTR	6044209	6044280	.	+	.	Parent=Os08t0203700-02
Chr08	irgsp1_rep	three_prime_UTR	6044361	6044432	.	+	.	Parent=Os08t0203700-02
Chr08	irgsp1_rep	three_prime_UTR	6044680	6044751	.	+	.	Parent=Os08t0203700-02
Chr08	irgsp1_rep	three_prime_UTR	6044834	6044905	.	+	.	Parent=Os08t0203700-02
Chr08	irgsp1_rep	three_prime_UTR	6044993	6045067	.	+	.	Parent=Os08t0203700-02
Chr08	irgsp1_rep	three_prime_UTR	6045157	6045228	.	+	.	Parent=Os08t0203700-02
Chr08	irgsp1_rep	three_prime_UTR	6045330	6045395	.	+	.	Parent=Os08t0203700-02
Chr08	irgsp1_rep	three_prime_UTR	6045505	6045570	.	+	.	Parent=Os08t0203700-02
Chr08	irgsp1_rep	three_prime_UTR	6045690	6045734	.	+	.	Parent=Os08t0203700-02
Chr08	irgsp1_rep	three_prime_UTR	6045811	6046131	.	+	.	Parent=Os08t0203700-02
Chr08	irgsp1_rep	mRNA	6047428	6047963	.	-	.	ID=Os08t0203750-00;Name=Os08t0203750-00;Locus_id=Os08g0203750;Note=Non-protein coding transcript.;Transcript_evidence=EU949024 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0203750-00
Chr08	irgsp1_rep	exon	6047428	6047963	.	-	.	Parent=Os08t0203750-00
Chr08	irgsp1_rep	mRNA	6055827	6058993	.	+	.	ID=Os08t0203800-01;Name=Os08t0203800-01;Locus_id=Os08g0203800;Oryzabase Gene Symbol Synonym(s)=OsFbox428%2C Os_F0440;Oryzabase Gene Name Synonym(s)=F-box protein 428;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK106289 (DDBJ%2C Best hit);ORF_evidence=Q6ZCF4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-101-B01;Oryzabase=17200;Expression=AK106289;TENOR=Os08t0203800-01;KEGG=Os08t0203800-01
Chr08	irgsp1_rep	CDS	6055827	6057232	.	+	0	Parent=Os08t0203800-01
Chr08	irgsp1_rep	CDS	6058654	6058669	.	+	1	Parent=Os08t0203800-01
Chr08	irgsp1_rep	three_prime_UTR	6058670	6058993	.	+	.	Parent=Os08t0203800-01
Chr08	irgsp1_rep	mRNA	6062772	6065354	.	-	.	ID=Os08t0203900-01;Name=Os08t0203900-01;Locus_id=Os08g0203900;Note=UAA transporter family protein.;Transcript_evidence=AK101564 (DDBJ%2C Best hit);ORF_evidence=XP_002873976.1 (RefSeq);NIAS_FLcDNA=J033050E20;Expression=AK101564;TENOR=Os08t0203900-01;KEGG=Os08t0203900-01
Chr08	irgsp1_rep	five_prime_UTR	6065041	6065354	.	-	.	Parent=Os08t0203900-01
Chr08	irgsp1_rep	five_prime_UTR	6064394	6064417	.	-	.	Parent=Os08t0203900-01
Chr08	irgsp1_rep	CDS	6063365	6064393	.	-	0	Parent=Os08t0203900-01
Chr08	irgsp1_rep	three_prime_UTR	6062772	6063364	.	-	.	Parent=Os08t0203900-01
Chr08	irgsp1_rep	mRNA	6102975	6105362	.	-	.	ID=Os08t0204632-01;Name=Os08t0204632-01;Locus_id=Os08g0204632;Note=Conserved hypothetical protein.;Transcript_evidence=AK242966 (DDBJ%2C Best hit);ORF_evidence=Q6ZCE2 (UniProt);NIAS_FLcDNA=J090090P09;TENOR=Os08t0204632-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	6105361	6105362	.	-	.	Parent=Os08t0204632-01
Chr08	irgsp1_rep	CDS	6105176	6105360	.	-	0	Parent=Os08t0204632-01
Chr08	irgsp1_rep	CDS	6103369	6103561	.	-	1	Parent=Os08t0204632-01
Chr08	irgsp1_rep	CDS	6103169	6103267	.	-	0	Parent=Os08t0204632-01
Chr08	irgsp1_rep	three_prime_UTR	6102975	6103168	.	-	.	Parent=Os08t0204632-01
Chr08	irgsp1_rep	mRNA	6112375	6115612	.	-	.	ID=Os08t0204800-01;Name=Os08t0204800-01;Locus_id=Os08g0204800;Note=Conserved hypothetical protein.;Transcript_evidence=AK064331 (DDBJ%2C Best hit);ORF_evidence=B8BBR3 (UniProt);NIAS_FLcDNA=002-107-G02;Expression=AK064331;TENOR=Os08t0204800-01;KEGG=Os08t0204800-01
Chr08	irgsp1_rep	five_prime_UTR	6115542	6115612	.	-	.	Parent=Os08t0204800-01
Chr08	irgsp1_rep	CDS	6115446	6115541	.	-	0	Parent=Os08t0204800-01
Chr08	irgsp1_rep	CDS	6114754	6114864	.	-	0	Parent=Os08t0204800-01
Chr08	irgsp1_rep	CDS	6114096	6114200	.	-	0	Parent=Os08t0204800-01
Chr08	irgsp1_rep	CDS	6113870	6113938	.	-	0	Parent=Os08t0204800-01
Chr08	irgsp1_rep	CDS	6113620	6113733	.	-	0	Parent=Os08t0204800-01
Chr08	irgsp1_rep	CDS	6113031	6113330	.	-	0	Parent=Os08t0204800-01
Chr08	irgsp1_rep	three_prime_UTR	6112375	6113030	.	-	.	Parent=Os08t0204800-01
Chr08	irgsp1_rep	mRNA	6121845	6123652	.	-	.	ID=Os08t0205000-00;Name=Os08t0205000-00;Locus_id=Os08g0205000;Note=Transferase domain containing protein.;Transcript_evidence=AK366637 (DDBJ);ORF_evidence=NP_001061230.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os08t0205000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	6123642	6123652	.	-	.	Parent=Os08t0205000-00
Chr08	irgsp1_rep	CDS	6123228	6123641	.	-	0	Parent=Os08t0205000-00
Chr08	irgsp1_rep	CDS	6122695	6122784	.	-	0	Parent=Os08t0205000-00
Chr08	irgsp1_rep	three_prime_UTR	6122193	6122694	.	-	.	Parent=Os08t0205000-00
Chr08	irgsp1_rep	three_prime_UTR	6121845	6122141	.	-	.	Parent=Os08t0205000-00
Chr08	irgsp1_rep	mRNA	6127418	6131390	.	+	.	ID=Os08t0205100-01;Name=Os08t0205100-01;Locus_id=Os08g0205100;Note=Disease resistance protein domain containing protein.;Transcript_evidence=AK119306 (DDBJ%2C Best hit);ORF_evidence=A3BQL7 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=001-130-F09;Oryzabase=20245;TENOR=Os08t0205100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	6127418	6127630	.	+	.	Parent=Os08t0205100-01
Chr08	irgsp1_rep	five_prime_UTR	6127776	6128196	.	+	.	Parent=Os08t0205100-01
Chr08	irgsp1_rep	CDS	6128197	6128212	.	+	0	Parent=Os08t0205100-01
Chr08	irgsp1_rep	CDS	6128353	6128608	.	+	2	Parent=Os08t0205100-01
Chr08	irgsp1_rep	CDS	6129154	6131140	.	+	1	Parent=Os08t0205100-01
Chr08	irgsp1_rep	three_prime_UTR	6131141	6131390	.	+	.	Parent=Os08t0205100-01
Chr08	irgsp1_rep	mRNA	6127823	6131014	.	-	.	ID=Os08t0205125-00;Name=Os08t0205125-00;Locus_id=Os08g0205125;Note=Hypothetical protein.;Transcript_evidence=tplb0034a10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0205125-00
Chr08	irgsp1_rep	five_prime_UTR	6130729	6131014	.	-	.	Parent=Os08t0205125-00
Chr08	irgsp1_rep	five_prime_UTR	6129947	6130562	.	-	.	Parent=Os08t0205125-00
Chr08	irgsp1_rep	CDS	6129572	6129946	.	-	0	Parent=Os08t0205125-00
Chr08	irgsp1_rep	three_prime_UTR	6129176	6129571	.	-	.	Parent=Os08t0205125-00
Chr08	irgsp1_rep	three_prime_UTR	6127823	6128626	.	-	.	Parent=Os08t0205125-00
Chr08	irgsp1_rep	mRNA	6137622	6141504	.	+	.	ID=Os08t0205150-01;Name=Os08t0205150-01;Locus_id=Os08g0205150;RAP-DB Gene Symbol Synonym(s)=OsPi304;CGSNL Gene Symbol=PI304;Oryzabase Gene Symbol Synonym(s)=OsPi304;Note=CC-NBS-LRR protein%2C Cold stress signaling and response;Transcript_evidence=AK287531;ORF_evidence=Q6ZCF9;GO=Molecular Function: protein binding (GO:0005515),Molecular Function: ADP binding (GO:0043531);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),Leucine-rich repeat domain superfamily (IPR032675),Virus X resistance protein-like%2C coiled-coil domain (IPR038005),Rx%2C N-terminal (IPR041118),NB-ARC (IPR002182),Leucine-rich repeat (IPR001611);NIAS_FLcDNA=J065002D03;Manual Curation=May 21%2C 2020;Literature_PMID=30190132;Oryzabase=20246;TENOR=Os08t0205150-01;KEGG=Os08t0205150-01
Chr08	irgsp1_rep	five_prime_UTR	6137622	6137954	.	+	.	Parent=Os08t0205150-01
Chr08	irgsp1_rep	five_prime_UTR	6138037	6138055	.	+	.	Parent=Os08t0205150-01
Chr08	irgsp1_rep	CDS	6138056	6138873	.	+	0	Parent=Os08t0205150-01
Chr08	irgsp1_rep	CDS	6139380	6141369	.	+	1	Parent=Os08t0205150-01
Chr08	irgsp1_rep	three_prime_UTR	6141370	6141504	.	+	.	Parent=Os08t0205150-01
Chr08	irgsp1_rep	mRNA	6138088	6141373	.	-	.	ID=Os08t0205175-00;Name=Os08t0205175-00;Locus_id=Os08g0205175;Note=Hypothetical protein.;Transcript_evidence=tplb0034a10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0205175-00
Chr08	irgsp1_rep	five_prime_UTR	6141252	6141373	.	-	.	Parent=Os08t0205175-00
Chr08	irgsp1_rep	CDS	6140914	6141251	.	-	0	Parent=Os08t0205175-00
Chr08	irgsp1_rep	CDS	6140421	6140751	.	-	1	Parent=Os08t0205175-00
Chr08	irgsp1_rep	three_prime_UTR	6139384	6140420	.	-	.	Parent=Os08t0205175-00
Chr08	irgsp1_rep	three_prime_UTR	6138088	6138881	.	-	.	Parent=Os08t0205175-00
Chr08	irgsp1_rep	mRNA	6142162	6143084	.	-	.	ID=Os08t0205200-01;Name=Os08t0205200-01;Locus_id=Os08g0205200;Note=Delayed-early response protein/equilibrative nucleoside transporter family protein.;Transcript_evidence=AK059439 (DDBJ%2C Best hit);ORF_evidence=NP_001148456.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: nucleoside transmembrane transporter activity (GO:0005337);InterPro=Delayed-early response protein/equilibrative nucleoside transporter (IPR002259);NIAS_FLcDNA=001-027-H02;Expression=AK059439;TENOR=Os08t0205200-01;KEGG=Os08t0205200-01
Chr08	irgsp1_rep	five_prime_UTR	6143084	6143084	.	-	.	Parent=Os08t0205200-01
Chr08	irgsp1_rep	CDS	6142367	6143083	.	-	0	Parent=Os08t0205200-01
Chr08	irgsp1_rep	three_prime_UTR	6142162	6142366	.	-	.	Parent=Os08t0205200-01
Chr08	irgsp1_rep	mRNA	6155162	6157693	.	+	.	ID=Os08t0205300-01;Name=Os08t0205300-01;Locus_id=Os08g0205300;Oryzabase Gene Symbol Synonym(s)=OsSET28%2C SDG740;Oryzabase Gene Name Synonym(s)=SET protein 28;Note=Hypothetical conserved gene.;Transcript_evidence=AK103876 (DDBJ%2C Best hit);ORF_evidence=Q6ZCF6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=SET domain (IPR001214);NIAS_FLcDNA=J033149M20;Oryzabase=13392;Expression=AK103876;TENOR=Os08t0205300-01;KEGG=Os08t0205300-01
Chr08	irgsp1_rep	five_prime_UTR	6155162	6155214	.	+	.	Parent=Os08t0205300-01
Chr08	irgsp1_rep	CDS	6155215	6156393	.	+	0	Parent=Os08t0205300-01
Chr08	irgsp1_rep	three_prime_UTR	6156394	6156437	.	+	.	Parent=Os08t0205300-01
Chr08	irgsp1_rep	three_prime_UTR	6157396	6157693	.	+	.	Parent=Os08t0205300-01
Chr08	irgsp1_rep	mRNA	6155163	6157777	.	+	.	ID=Os08t0205300-02;Name=Os08t0205300-02;Locus_id=Os08g0205300;Oryzabase Gene Symbol Synonym(s)=OsSET28%2C SDG740;Oryzabase Gene Name Synonym(s)=SET protein 28;Note=SET domain containing protein.;Transcript_evidence=AK122033 (DDBJ%2C Best hit);ORF_evidence=A2YSB4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=SET domain (IPR001214);NIAS_FLcDNA=J033112H20;Oryzabase=13392;Expression=AK122033;TENOR=Os08t0205300-02;KEGG=Os08t0205300-02
Chr08	irgsp1_rep	five_prime_UTR	6155163	6155214	.	+	.	Parent=Os08t0205300-02
Chr08	irgsp1_rep	CDS	6155215	6155464	.	+	0	Parent=Os08t0205300-02
Chr08	irgsp1_rep	CDS	6155648	6156393	.	+	2	Parent=Os08t0205300-02
Chr08	irgsp1_rep	three_prime_UTR	6156394	6156437	.	+	.	Parent=Os08t0205300-02
Chr08	irgsp1_rep	three_prime_UTR	6157396	6157777	.	+	.	Parent=Os08t0205300-02
Chr08	irgsp1_rep	mRNA	6156322	6157732	.	+	.	ID=Os08t0205300-03;Name=Os08t0205300-03;Locus_id=Os08g0205300;Oryzabase Gene Symbol Synonym(s)=OsSET28%2C SDG740;Oryzabase Gene Name Synonym(s)=SET protein 28;Note=Hypothetical conserved gene.;Transcript_evidence=AK063775 (DDBJ%2C Best hit);ORF_evidence=Q6ZCF6 (UniProt);NIAS_FLcDNA=001-121-D01;Oryzabase=13392;Expression=AK063775;TENOR=Os08t0205300-03;KEGG=Os08t0205300-03
Chr08	irgsp1_rep	CDS	6156322	6156393	.	+	0	Parent=Os08t0205300-03
Chr08	irgsp1_rep	three_prime_UTR	6156394	6156437	.	+	.	Parent=Os08t0205300-03
Chr08	irgsp1_rep	three_prime_UTR	6157396	6157732	.	+	.	Parent=Os08t0205300-03
Chr08	irgsp1_rep	mRNA	6159123	6161383	.	+	.	ID=Os08t0205400-01;Name=Os08t0205400-01;Locus_id=Os08g0205400;RAP-DB Gene Symbol Synonym(s)=OsATX1;RAP-DB Gene Name Synonym(s)=Antioxidant Protein1;CGSNL Gene Symbol=ATX1;CGSNL Gene Name=ANTIOXIDANT PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsATX1%2C OsHMP37%2C HMP37;Oryzabase Gene Name Synonym(s)=Antioxidant Protein1%2C Heavy metal-associated protein 37;Note=Cu chaperone%2C Root-to-shoot Cu translocation%2C Distribution of Cu from old leaves to developing tissues and seeds;Transcript_evidence=AK243577;ORF_evidence=Q6ZCF3;GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain superfamily (IPR036163),Heavy metal-associated domain%2C HMA (IPR006121);NIAS_FLcDNA=J100082I23;Manual Curation=September 12%2C 2018;Literature_PMID=30002257;Oryzabase=22584;TENOR=Os08t0205400-01;KEGG=Os08t0205400-01;Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737), plasma membrane (GO:0005886)
Chr08	irgsp1_rep	five_prime_UTR	6159123	6159190	.	+	.	Parent=Os08t0205400-01
Chr08	irgsp1_rep	CDS	6159191	6159199	.	+	0	Parent=Os08t0205400-01
Chr08	irgsp1_rep	CDS	6160018	6160093	.	+	0	Parent=Os08t0205400-01
Chr08	irgsp1_rep	CDS	6160986	6161146	.	+	2	Parent=Os08t0205400-01
Chr08	irgsp1_rep	three_prime_UTR	6161147	6161383	.	+	.	Parent=Os08t0205400-01
Chr08	irgsp1_rep	mRNA	6161997	6163054	.	-	.	ID=Os08t0205500-00;Name=Os08t0205500-00;Locus_id=Os08g0205500;CGSNL Gene Symbol=HMP38;CGSNL Gene Name=HEAVY METAL-ASSOCIATED PROTEIN 38;Oryzabase Gene Symbol Synonym(s)=OsHMP38;Oryzabase Gene Name Synonym(s)=Heavy metal-associated protein 38;Note=Heavy metal-associated domain%2C HMA domain containing protein.;Transcript_evidence=EU964716 (DDBJ);ORF_evidence=Q6ZCF2 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);Oryzabase=23553;TENOR=Os08t0205500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	6162973	6163054	.	-	0	Parent=Os08t0205500-00
Chr08	irgsp1_rep	CDS	6161997	6162598	.	-	2	Parent=Os08t0205500-00
Chr08	irgsp1_rep	mRNA	6162026	6163058	.	+	.	ID=Os08t0205650-00;Name=Os08t0205650-00;Locus_id=Os08g0205650;Note=Hypothetical protein.;Transcript_evidence=EU949920 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0205650-00
Chr08	irgsp1_rep	five_prime_UTR	6162026	6162261	.	+	.	Parent=Os08t0205650-00
Chr08	irgsp1_rep	CDS	6162262	6162690	.	+	0	Parent=Os08t0205650-00
Chr08	irgsp1_rep	CDS	6162918	6162941	.	+	0	Parent=Os08t0205650-00
Chr08	irgsp1_rep	three_prime_UTR	6162942	6163058	.	+	.	Parent=Os08t0205650-00
Chr08	irgsp1_rep	mRNA	6168352	6169288	.	+	.	ID=Os08t0205800-01;Name=Os08t0205800-01;Locus_id=Os08g0205800;Note=Hypothetical conserved gene.;Transcript_evidence=AK062655 (DDBJ%2C Best hit);ORF_evidence=B8BBZ6 (UniProt);NIAS_FLcDNA=001-105-E11;Expression=AK062655;TENOR=Os08t0205800-01;KEGG=Os08t0205800-01
Chr08	irgsp1_rep	five_prime_UTR	6168352	6168582	.	+	.	Parent=Os08t0205800-01
Chr08	irgsp1_rep	CDS	6168583	6168915	.	+	0	Parent=Os08t0205800-01
Chr08	irgsp1_rep	three_prime_UTR	6168916	6169288	.	+	.	Parent=Os08t0205800-01
Chr08	irgsp1_rep	mRNA	6170105	6175794	.	-	.	ID=Os08t0205900-01;Name=Os08t0205900-01;Locus_id=Os08g0205900;Note=Similar to Viroid RNA-binding protein (Fragment).;Transcript_evidence=AK103274 (DDBJ%2C Best hit);ORF_evidence=NP_001148620.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: transaminase activity (GO:0008483),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferase class-III (IPR005814),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J033124J10;Expression=AK103274;TENOR=Os08t0205900-01;KEGG=Os08t0205900-01
Chr08	irgsp1_rep	five_prime_UTR	6175697	6175794	.	-	.	Parent=Os08t0205900-01
Chr08	irgsp1_rep	CDS	6175649	6175696	.	-	0	Parent=Os08t0205900-01
Chr08	irgsp1_rep	CDS	6174855	6174976	.	-	0	Parent=Os08t0205900-01
Chr08	irgsp1_rep	CDS	6174664	6174748	.	-	1	Parent=Os08t0205900-01
Chr08	irgsp1_rep	CDS	6174442	6174514	.	-	0	Parent=Os08t0205900-01
Chr08	irgsp1_rep	CDS	6174162	6174259	.	-	2	Parent=Os08t0205900-01
Chr08	irgsp1_rep	CDS	6173838	6173930	.	-	0	Parent=Os08t0205900-01
Chr08	irgsp1_rep	CDS	6173475	6173548	.	-	0	Parent=Os08t0205900-01
Chr08	irgsp1_rep	CDS	6173053	6173091	.	-	1	Parent=Os08t0205900-01
Chr08	irgsp1_rep	CDS	6172802	6172890	.	-	1	Parent=Os08t0205900-01
Chr08	irgsp1_rep	CDS	6172628	6172704	.	-	2	Parent=Os08t0205900-01
Chr08	irgsp1_rep	CDS	6172460	6172534	.	-	0	Parent=Os08t0205900-01
Chr08	irgsp1_rep	CDS	6171886	6171933	.	-	0	Parent=Os08t0205900-01
Chr08	irgsp1_rep	CDS	6171713	6171796	.	-	0	Parent=Os08t0205900-01
Chr08	irgsp1_rep	CDS	6171503	6171590	.	-	0	Parent=Os08t0205900-01
Chr08	irgsp1_rep	CDS	6171348	6171426	.	-	2	Parent=Os08t0205900-01
Chr08	irgsp1_rep	CDS	6171173	6171263	.	-	1	Parent=Os08t0205900-01
Chr08	irgsp1_rep	CDS	6170998	6171076	.	-	0	Parent=Os08t0205900-01
Chr08	irgsp1_rep	CDS	6170493	6170608	.	-	2	Parent=Os08t0205900-01
Chr08	irgsp1_rep	CDS	6170316	6170390	.	-	0	Parent=Os08t0205900-01
Chr08	irgsp1_rep	three_prime_UTR	6170105	6170315	.	-	.	Parent=Os08t0205900-01
Chr08	irgsp1_rep	mRNA	6206039	6211417	.	+	.	ID=Os08t0206400-01;Name=Os08t0206400-01;Locus_id=Os08g0206400;CGSNL Gene Symbol=HAK12;CGSNL Gene Name=HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 12;Oryzabase Gene Symbol Synonym(s)=OsHAK12;Oryzabase Gene Name Synonym(s)=High-affinity Potassium(K+) Transporter 12%2C Putative potassium transporter 12;Note=Similar to Potassium transporter 18.;Transcript_evidence=AK069377 (DDBJ%2C Best hit);ORF_evidence=Q653B6 (UniProt);GO=Biological Process: potassium ion transmembrane transport (GO:0071805),Cellular Component: membrane (GO:0016020),Molecular Function: potassium ion transmembrane transporter activity (GO:0015079);InterPro=K+ potassium transporter (IPR003855);NIAS_FLcDNA=J023012J20;Oryzabase=8666;TENOR=Os08t0206400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	6206039	6206692	.	+	.	Parent=Os08t0206400-01
Chr08	irgsp1_rep	CDS	6206693	6206812	.	+	0	Parent=Os08t0206400-01
Chr08	irgsp1_rep	CDS	6207221	6207446	.	+	0	Parent=Os08t0206400-01
Chr08	irgsp1_rep	CDS	6207844	6207887	.	+	2	Parent=Os08t0206400-01
Chr08	irgsp1_rep	CDS	6207973	6207981	.	+	0	Parent=Os08t0206400-01
Chr08	irgsp1_rep	three_prime_UTR	6207982	6208089	.	+	.	Parent=Os08t0206400-01
Chr08	irgsp1_rep	three_prime_UTR	6208160	6208210	.	+	.	Parent=Os08t0206400-01
Chr08	irgsp1_rep	three_prime_UTR	6208573	6208833	.	+	.	Parent=Os08t0206400-01
Chr08	irgsp1_rep	three_prime_UTR	6208929	6208981	.	+	.	Parent=Os08t0206400-01
Chr08	irgsp1_rep	three_prime_UTR	6209047	6209161	.	+	.	Parent=Os08t0206400-01
Chr08	irgsp1_rep	three_prime_UTR	6209327	6209581	.	+	.	Parent=Os08t0206400-01
Chr08	irgsp1_rep	three_prime_UTR	6210115	6211417	.	+	.	Parent=Os08t0206400-01
Chr08	irgsp1_rep	mRNA	6210108	6211145	.	-	.	ID=Os08t0206466-00;Name=Os08t0206466-00;Locus_id=Os08g0206466;Note=Hypothetical gene.;Transcript_evidence=EU968841 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0206466-00
Chr08	irgsp1_rep	five_prime_UTR	6210386	6211145	.	-	.	Parent=Os08t0206466-00
Chr08	irgsp1_rep	CDS	6210108	6210385	.	-	0	Parent=Os08t0206466-00
Chr08	irgsp1_rep	mRNA	6212073	6217326	.	-	.	ID=Os08t0206500-00;Name=Os08t0206500-00;Locus_id=Os08g0206500;CGSNL Gene Symbol=HAP5F;CGSNL Gene Name=HAP5F SUBUNIT OF CCAAT-BOX BINDING COMPLEX;Oryzabase Gene Symbol Synonym(s)=OsHAP5F%2C NF-YC%2C CBF-C%2C OsNF-YC5%2C Os-NF-YC5%2C NF-YC5%2C NFYC5;Oryzabase Gene Name Synonym(s)=Nuclear factor Y C5 subunit%2C Nuclear factor Y C subunit 5%2C NUCLEAR FACTOR-Y subunit C5%2C NUCLEAR FACTOR-Y subunit NF-YC5%2C NF-YC subunit 5%2C NF-YC family 5;Note=Similar to HAP5 subunit of HAP complex.;Transcript_evidence=tplb0038l21 (Wheat FLcDNA);ORF_evidence=A6BLW7 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Transcription factor CBF/NF-Y/archaeal histone (IPR003958),Histone-fold (IPR009072);Oryzabase=8496;TENOR=Os08t0206500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	6217053	6217326	.	-	0	Parent=Os08t0206500-00
Chr08	irgsp1_rep	CDS	6212073	6212647	.	-	2	Parent=Os08t0206500-00
Chr08	irgsp1_rep	mRNA	6218688	6224033	.	+	.	ID=Os08t0206600-01;Name=Os08t0206600-01;Locus_id=Os08g0206600;CGSNL Gene Symbol=ATIC;CGSNL Gene Name=AICAR FORMYL TRANSFERASE;Oryzabase Gene Symbol Synonym(s)=OsATIC;Oryzabase Gene Name Synonym(s)=AICAR formyl transferase;Note=Similar to AICARFT/IMPCHase bienzyme family protein.;Transcript_evidence=AK102764 (DDBJ%2C Best hit);ORF_evidence=NP_850240.1 (RefSeq);GO=Biological Process: purine nucleotide biosynthetic process (GO:0006164),Molecular Function: catalytic activity (GO:0003824),Molecular Function: IMP cyclohydrolase activity (GO:0003937),Molecular Function: phosphoribosylaminoimidazolecarboxamide formyltransferase activity (GO:0004643);InterPro=AICARFT/IMPCHase bienzyme (IPR002695),Methylglyoxal synthase-like domain (IPR011607),Cytidine deaminase-like (IPR016193),AICAR transformylase domain (IPR024051);NIAS_FLcDNA=J033107D20;Oryzabase=22929;Expression=AK102764;TENOR=Os08t0206600-01;KEGG=Os08t0206600-01 (EC:2.1.2.3%2C EC:3.5.4.10)
Chr08	irgsp1_rep	five_prime_UTR	6218688	6218750	.	+	.	Parent=Os08t0206600-01
Chr08	irgsp1_rep	CDS	6218751	6218858	.	+	0	Parent=Os08t0206600-01
Chr08	irgsp1_rep	CDS	6219003	6219117	.	+	0	Parent=Os08t0206600-01
Chr08	irgsp1_rep	CDS	6220370	6220448	.	+	2	Parent=Os08t0206600-01
Chr08	irgsp1_rep	CDS	6220840	6220936	.	+	1	Parent=Os08t0206600-01
Chr08	irgsp1_rep	CDS	6221102	6221204	.	+	0	Parent=Os08t0206600-01
Chr08	irgsp1_rep	CDS	6221315	6221445	.	+	2	Parent=Os08t0206600-01
Chr08	irgsp1_rep	CDS	6221627	6221804	.	+	0	Parent=Os08t0206600-01
Chr08	irgsp1_rep	CDS	6221900	6222057	.	+	2	Parent=Os08t0206600-01
Chr08	irgsp1_rep	CDS	6222287	6222496	.	+	0	Parent=Os08t0206600-01
Chr08	irgsp1_rep	CDS	6222573	6222920	.	+	0	Parent=Os08t0206600-01
Chr08	irgsp1_rep	CDS	6223002	6223128	.	+	0	Parent=Os08t0206600-01
Chr08	irgsp1_rep	CDS	6223646	6223797	.	+	2	Parent=Os08t0206600-01
Chr08	irgsp1_rep	three_prime_UTR	6223798	6224033	.	+	.	Parent=Os08t0206600-01
Chr08	irgsp1_rep	mRNA	6218690	6224037	.	+	.	ID=Os08t0206600-02;Name=Os08t0206600-02;Locus_id=Os08g0206600;CGSNL Gene Symbol=ATIC;CGSNL Gene Name=AICAR FORMYL TRANSFERASE;Oryzabase Gene Symbol Synonym(s)=OsATIC;Oryzabase Gene Name Synonym(s)=AICAR formyl transferase;Note=AICARFT/IMPCHase bienzyme family protein.;Transcript_evidence=AK064336 (DDBJ%2C Best hit);ORF_evidence=NP_850240.1 (RefSeq);GO=Biological Process: purine nucleotide biosynthetic process (GO:0006164),Molecular Function: catalytic activity (GO:0003824),Molecular Function: IMP cyclohydrolase activity (GO:0003937),Molecular Function: phosphoribosylaminoimidazolecarboxamide formyltransferase activity (GO:0004643);InterPro=AICARFT/IMPCHase bienzyme (IPR002695),Methylglyoxal synthase-like domain (IPR011607),Cytidine deaminase-like (IPR016193),AICAR transformylase domain (IPR024051);NIAS_FLcDNA=002-107-G10;Oryzabase=22929;Expression=AK064336;TENOR=Os08t0206600-02;KEGG=Os08t0206600-02 (EC:2.1.2.3%2C EC:3.5.4.10)
Chr08	irgsp1_rep	five_prime_UTR	6218690	6218750	.	+	.	Parent=Os08t0206600-02
Chr08	irgsp1_rep	CDS	6218751	6218858	.	+	0	Parent=Os08t0206600-02
Chr08	irgsp1_rep	CDS	6219003	6219117	.	+	0	Parent=Os08t0206600-02
Chr08	irgsp1_rep	CDS	6220373	6220448	.	+	2	Parent=Os08t0206600-02
Chr08	irgsp1_rep	CDS	6220840	6220936	.	+	1	Parent=Os08t0206600-02
Chr08	irgsp1_rep	CDS	6221102	6221204	.	+	0	Parent=Os08t0206600-02
Chr08	irgsp1_rep	CDS	6221315	6221445	.	+	2	Parent=Os08t0206600-02
Chr08	irgsp1_rep	CDS	6221627	6221804	.	+	0	Parent=Os08t0206600-02
Chr08	irgsp1_rep	CDS	6221900	6222057	.	+	2	Parent=Os08t0206600-02
Chr08	irgsp1_rep	CDS	6222287	6222496	.	+	0	Parent=Os08t0206600-02
Chr08	irgsp1_rep	CDS	6222573	6222920	.	+	0	Parent=Os08t0206600-02
Chr08	irgsp1_rep	CDS	6223002	6223128	.	+	0	Parent=Os08t0206600-02
Chr08	irgsp1_rep	CDS	6223646	6223797	.	+	2	Parent=Os08t0206600-02
Chr08	irgsp1_rep	three_prime_UTR	6223798	6224037	.	+	.	Parent=Os08t0206600-02
Chr08	irgsp1_rep	mRNA	6218749	6223799	.	-	.	ID=Os08t0206650-00;Name=Os08t0206650-00;Locus_id=Os08g0206650;Note=Hypothetical protein.;Transcript_evidence=tplb0042h04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0206650-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	6223633	6223799	.	-	.	Parent=Os08t0206650-00
Chr08	irgsp1_rep	five_prime_UTR	6223003	6223117	.	-	.	Parent=Os08t0206650-00
Chr08	irgsp1_rep	five_prime_UTR	6222546	6222921	.	-	.	Parent=Os08t0206650-00
Chr08	irgsp1_rep	five_prime_UTR	6222283	6222473	.	-	.	Parent=Os08t0206650-00
Chr08	irgsp1_rep	five_prime_UTR	6221920	6222053	.	-	.	Parent=Os08t0206650-00
Chr08	irgsp1_rep	five_prime_UTR	6221660	6221817	.	-	.	Parent=Os08t0206650-00
Chr08	irgsp1_rep	CDS	6221625	6221659	.	-	0	Parent=Os08t0206650-00
Chr08	irgsp1_rep	CDS	6221313	6221440	.	-	1	Parent=Os08t0206650-00
Chr08	irgsp1_rep	CDS	6221087	6221202	.	-	2	Parent=Os08t0206650-00
Chr08	irgsp1_rep	CDS	6220917	6220928	.	-	0	Parent=Os08t0206650-00
Chr08	irgsp1_rep	three_prime_UTR	6220835	6220916	.	-	.	Parent=Os08t0206650-00
Chr08	irgsp1_rep	three_prime_UTR	6220366	6220442	.	-	.	Parent=Os08t0206650-00
Chr08	irgsp1_rep	three_prime_UTR	6218749	6218915	.	-	.	Parent=Os08t0206650-00
Chr08	irgsp1_rep	mRNA	6226356	6231302	.	+	.	ID=Os08t0206700-01;Name=Os08t0206700-01;Locus_id=Os08g0206700;Note=DNA-binding%2C integrase-type domain containing protein.;Transcript_evidence=AK071442 (DDBJ%2C Best hit);ORF_evidence=B9FZL1 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Methyl-CpG DNA binding (IPR001739),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J023091M14;Expression=AK071442;TENOR=Os08t0206700-01;KEGG=Os08t0206700-01
Chr08	irgsp1_rep	five_prime_UTR	6226356	6226634	.	+	.	Parent=Os08t0206700-01
Chr08	irgsp1_rep	five_prime_UTR	6227814	6227886	.	+	.	Parent=Os08t0206700-01
Chr08	irgsp1_rep	CDS	6227887	6228585	.	+	0	Parent=Os08t0206700-01
Chr08	irgsp1_rep	CDS	6228681	6228779	.	+	0	Parent=Os08t0206700-01
Chr08	irgsp1_rep	CDS	6228863	6228958	.	+	0	Parent=Os08t0206700-01
Chr08	irgsp1_rep	CDS	6229092	6229190	.	+	0	Parent=Os08t0206700-01
Chr08	irgsp1_rep	CDS	6229271	6229369	.	+	0	Parent=Os08t0206700-01
Chr08	irgsp1_rep	CDS	6230850	6231026	.	+	0	Parent=Os08t0206700-01
Chr08	irgsp1_rep	three_prime_UTR	6231027	6231302	.	+	.	Parent=Os08t0206700-01
Chr08	irgsp1_rep	mRNA	6233507	6234131	.	+	.	ID=Os08t0206800-01;Name=Os08t0206800-01;Locus_id=Os08g0206800;Note=Similar to cDNA clone:001-034-C01%2C full insert sequence.;Transcript_evidence=AK105588 (DDBJ%2C Best hit);ORF_evidence=B7E5C1 (UniProt);NIAS_FLcDNA=001-129-A04;TENOR=Os08t0206800-01;KEGG=Os08t0206800-01
Chr08	irgsp1_rep	CDS	6233507	6233671	.	+	0	Parent=Os08t0206800-01
Chr08	irgsp1_rep	three_prime_UTR	6233672	6234131	.	+	.	Parent=Os08t0206800-01
Chr08	irgsp1_rep	mRNA	6237449	6242078	.	+	.	ID=Os08t0206900-01;Name=Os08t0206900-01;Locus_id=Os08g0206900;RAP-DB Gene Symbol Synonym(s)=SPL29%2C UAP1;RAP-DB Gene Name Synonym(s)=spotted leaf 29%2C UDP-N-acetylglucosamine pyrophosphorylase 1;CGSNL Gene Symbol=SPL29;CGSNL Gene Name=SPOTTED LEAF 29;Oryzabase Gene Symbol Synonym(s)=UAP1%2C OsUAP1;Oryzabase Gene Name Synonym(s)=spotted leaf 29%2C UDP-N-acetylglucosamine pyrophosphorylase 1;Note=UDP-N-acetylglucosamine pyrophosphorylase 1%2C Regulation of leaf senescence%2C Defence responses;Transcript_evidence=AK071409;ORF_evidence=Q6ZJ97;GO=Biological Process: metabolic process (GO:0008152),Molecular Function: uridylyltransferase activity (GO:0070569);InterPro=Nucleotide-diphospho-sugar transferases (IPR029044),UDPGP family (IPR002618);NIAS_FLcDNA=J023091K19;Manual Curation=October 3%2C 2017;Literature_PMID=28967675,25399020;Oryzabase=21609;Expression=AK071409;TENOR=Os08t0206900-01;KEGG=Os08t0206900-01 (EC:2.7.7.23)
Chr08	irgsp1_rep	five_prime_UTR	6237449	6237561	.	+	.	Parent=Os08t0206900-01
Chr08	irgsp1_rep	CDS	6237562	6237732	.	+	0	Parent=Os08t0206900-01
Chr08	irgsp1_rep	CDS	6238242	6238296	.	+	0	Parent=Os08t0206900-01
Chr08	irgsp1_rep	CDS	6238385	6238536	.	+	2	Parent=Os08t0206900-01
Chr08	irgsp1_rep	CDS	6238638	6238677	.	+	0	Parent=Os08t0206900-01
Chr08	irgsp1_rep	CDS	6239050	6239139	.	+	2	Parent=Os08t0206900-01
Chr08	irgsp1_rep	CDS	6239227	6239330	.	+	2	Parent=Os08t0206900-01
Chr08	irgsp1_rep	CDS	6239451	6239525	.	+	0	Parent=Os08t0206900-01
Chr08	irgsp1_rep	CDS	6239708	6239747	.	+	0	Parent=Os08t0206900-01
Chr08	irgsp1_rep	CDS	6239837	6239919	.	+	2	Parent=Os08t0206900-01
Chr08	irgsp1_rep	CDS	6240029	6240106	.	+	0	Parent=Os08t0206900-01
Chr08	irgsp1_rep	CDS	6240210	6240353	.	+	0	Parent=Os08t0206900-01
Chr08	irgsp1_rep	CDS	6240435	6240502	.	+	0	Parent=Os08t0206900-01
Chr08	irgsp1_rep	CDS	6241173	6241287	.	+	1	Parent=Os08t0206900-01
Chr08	irgsp1_rep	CDS	6241387	6241543	.	+	0	Parent=Os08t0206900-01
Chr08	irgsp1_rep	CDS	6241653	6241750	.	+	2	Parent=Os08t0206900-01
Chr08	irgsp1_rep	three_prime_UTR	6241751	6242078	.	+	.	Parent=Os08t0206900-01
Chr08	irgsp1_rep	mRNA	6242130	6243735	.	-	.	ID=Os08t0206950-00;Name=Os08t0206950-00;Locus_id=Os08g0206950;Note=Similar to Pectinesterase.;Transcript_evidence=AK248420 (DDBJ);ORF_evidence=B8BBW3 (UniProt);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),Pectinesterase%2C active site (IPR018040);TENOR=Os08t0206950-00;KEGG=Os08t0206950-00
Chr08	irgsp1_rep	five_prime_UTR	6243710	6243735	.	-	.	Parent=Os08t0206950-00
Chr08	irgsp1_rep	CDS	6243336	6243709	.	-	0	Parent=Os08t0206950-00
Chr08	irgsp1_rep	CDS	6243060	6243231	.	-	1	Parent=Os08t0206950-00
Chr08	irgsp1_rep	CDS	6242763	6242969	.	-	0	Parent=Os08t0206950-00
Chr08	irgsp1_rep	CDS	6242421	6242680	.	-	0	Parent=Os08t0206950-00
Chr08	irgsp1_rep	CDS	6242159	6242330	.	-	1	Parent=Os08t0206950-00
Chr08	irgsp1_rep	three_prime_UTR	6242130	6242158	.	-	.	Parent=Os08t0206950-00
Chr08	irgsp1_rep	mRNA	6244128	6245111	.	-	.	ID=Os08t0207000-01;Name=Os08t0207000-01;Locus_id=Os08g0207000;Note=Similar to 40S ribosomal protein S11.;Transcript_evidence=AK058705 (DDBJ%2C Best hit);ORF_evidence=NP_001105562.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S17 (IPR000266),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),Ribosomal protein S17%2C conserved site (IPR019979);NIAS_FLcDNA=001-019-C09;Expression=AK058705;TENOR=Os08t0207000-01;KEGG=Os08t0207000-01
Chr08	irgsp1_rep	CDS	6245035	6245111	.	-	0	Parent=Os08t0207000-01
Chr08	irgsp1_rep	CDS	6244325	6244415	.	-	1	Parent=Os08t0207000-01
Chr08	irgsp1_rep	three_prime_UTR	6244128	6244324	.	-	.	Parent=Os08t0207000-01
Chr08	irgsp1_rep	mRNA	6251353	6252206	.	+	.	ID=Os08t0207300-01;Name=Os08t0207300-01;Locus_id=Os08g0207300;Note=Conserved hypothetical protein.;Transcript_evidence=AK110728 (DDBJ%2C Best hit);ORF_evidence=Q5W660 (UniProt);NIAS_FLcDNA=002-170-E07;TENOR=Os08t0207300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	6251353	6251452	.	+	.	Parent=Os08t0207300-01
Chr08	irgsp1_rep	CDS	6251453	6251797	.	+	0	Parent=Os08t0207300-01
Chr08	irgsp1_rep	three_prime_UTR	6251798	6252206	.	+	.	Parent=Os08t0207300-01
Chr08	irgsp1_rep	mRNA	6267772	6270409	.	-	.	ID=Os08t0207401-00;Name=Os08t0207401-00;Locus_id=Os08g0207401;Note=Hypothetical gene.;Transcript_evidence=EU967967 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0207401-00
Chr08	irgsp1_rep	five_prime_UTR	6270098	6270409	.	-	.	Parent=Os08t0207401-00
Chr08	irgsp1_rep	five_prime_UTR	6268537	6268708	.	-	.	Parent=Os08t0207401-00
Chr08	irgsp1_rep	five_prime_UTR	6268472	6268482	.	-	.	Parent=Os08t0207401-00
Chr08	irgsp1_rep	CDS	6267772	6268471	.	-	0	Parent=Os08t0207401-00
Chr08	irgsp1_rep	mRNA	6267823	6270904	.	+	.	ID=Os08t0207500-01;Name=Os08t0207500-01;Locus_id=Os08g0207500;CGSNL Gene Symbol=ZIP4;CGSNL Gene Name=ZINC TRANSPORTER 4;Oryzabase Gene Symbol Synonym(s)=OsZIP4;Oryzabase Gene Name Synonym(s)=zinc transporter 4%2C Zrt-Irt-like protein 4%2C Zinc-regulated transporter 4;Note=Similar to Zinc transporter ZIP1 (Fragment).;Transcript_evidence=AK105258 (DDBJ%2C Best hit);ORF_evidence=Q6ZJ91 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Biological Process: transmembrane transport (GO:0055085),Biological Process: zinc ion transmembrane transport (GO:0071577),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: zinc ion transmembrane transporter activity (GO:0005385),Molecular Function: metal ion transmembrane transporter activity (GO:0046873);InterPro=Zinc/iron permease (IPR003689),Zinc/iron permease%2C fungal/plant (IPR004698);NIAS_FLcDNA=001-114-G07;Oryzabase=8375;Expression=AK105258;TENOR=Os08t0207500-01;KEGG=Os08t0207500-01
Chr08	irgsp1_rep	five_prime_UTR	6267823	6267856	.	+	.	Parent=Os08t0207500-01
Chr08	irgsp1_rep	CDS	6267857	6268591	.	+	0	Parent=Os08t0207500-01
Chr08	irgsp1_rep	CDS	6269118	6269267	.	+	0	Parent=Os08t0207500-01
Chr08	irgsp1_rep	CDS	6270102	6270407	.	+	0	Parent=Os08t0207500-01
Chr08	irgsp1_rep	three_prime_UTR	6270408	6270904	.	+	.	Parent=Os08t0207500-01
Chr08	irgsp1_rep	mRNA	6272214	6280917	.	+	.	ID=Os08t0207600-01;Name=Os08t0207600-01;Locus_id=Os08g0207600;Note=Similar to GTP-binding protein.;Transcript_evidence=AK120546 (DDBJ%2C Best hit),AK073315 (DDBJ%2C Best hit);ORF_evidence=XP_002893669.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: RNA binding (GO:0003723),Molecular Function: GTP binding (GO:0005525);InterPro=GTP-binding domain%2C HSR1-related (IPR002917),K Homology%2C type 2 (IPR004044),Small GTP-binding protein domain (IPR005225),GTP-binding protein Era (IPR005662),K Homology%2C prokaryotic type (IPR009019),K homology domain-like%2C alpha/beta (IPR015946);NIAS_FLcDNA=J013129M01,J033026B10;TENOR=Os08t0207600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	6272214	6272290	.	+	.	Parent=Os08t0207600-01
Chr08	irgsp1_rep	CDS	6272291	6272794	.	+	0	Parent=Os08t0207600-01
Chr08	irgsp1_rep	CDS	6274039	6274128	.	+	0	Parent=Os08t0207600-01
Chr08	irgsp1_rep	CDS	6274599	6274744	.	+	0	Parent=Os08t0207600-01
Chr08	irgsp1_rep	CDS	6274876	6275034	.	+	1	Parent=Os08t0207600-01
Chr08	irgsp1_rep	CDS	6275116	6275182	.	+	1	Parent=Os08t0207600-01
Chr08	irgsp1_rep	CDS	6275291	6275398	.	+	0	Parent=Os08t0207600-01
Chr08	irgsp1_rep	CDS	6279843	6279982	.	+	0	Parent=Os08t0207600-01
Chr08	irgsp1_rep	CDS	6280179	6280278	.	+	1	Parent=Os08t0207600-01
Chr08	irgsp1_rep	three_prime_UTR	6280279	6280285	.	+	.	Parent=Os08t0207600-01
Chr08	irgsp1_rep	three_prime_UTR	6280498	6280917	.	+	.	Parent=Os08t0207600-01
Chr08	irgsp1_rep	mRNA	6272270	6274292	.	+	.	ID=Os08t0207600-02;Name=Os08t0207600-02;Locus_id=Os08g0207600;Note=Similar to GTP-binding protein (ERG).;Transcript_evidence=AK108310 (DDBJ%2C Best hit);ORF_evidence=NP_174383.1 (RefSeq);NIAS_FLcDNA=002-141-F10;Expression=AK108310;TENOR=Os08t0207600-02;KEGG=Os08t0207600-02
Chr08	irgsp1_rep	five_prime_UTR	6272270	6272290	.	+	.	Parent=Os08t0207600-02
Chr08	irgsp1_rep	CDS	6272291	6272794	.	+	0	Parent=Os08t0207600-02
Chr08	irgsp1_rep	CDS	6274039	6274161	.	+	0	Parent=Os08t0207600-02
Chr08	irgsp1_rep	three_prime_UTR	6274162	6274292	.	+	.	Parent=Os08t0207600-02
Chr08	irgsp1_rep	mRNA	6281221	6286663	.	-	.	ID=Os08t0207800-01;Name=Os08t0207800-01;Locus_id=Os08g0207800;Note=Peptidase aspartic%2C catalytic domain containing protein.;Transcript_evidence=AK106835 (DDBJ%2C Best hit);ORF_evidence=B8BCZ2 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=002-116-G06;Expression=AK106835;TENOR=Os08t0207800-01;KEGG=Os08t0207800-01
Chr08	irgsp1_rep	five_prime_UTR	6286617	6286663	.	-	.	Parent=Os08t0207800-01
Chr08	irgsp1_rep	five_prime_UTR	6286455	6286527	.	-	.	Parent=Os08t0207800-01
Chr08	irgsp1_rep	five_prime_UTR	6286247	6286366	.	-	.	Parent=Os08t0207800-01
Chr08	irgsp1_rep	five_prime_UTR	6282744	6282771	.	-	.	Parent=Os08t0207800-01
Chr08	irgsp1_rep	CDS	6281394	6282743	.	-	0	Parent=Os08t0207800-01
Chr08	irgsp1_rep	three_prime_UTR	6281221	6281393	.	-	.	Parent=Os08t0207800-01
Chr08	irgsp1_rep	mRNA	6303848	6304320	.	+	.	ID=Os08t0207951-00;Name=Os08t0207951-00;Locus_id=Os08g0207951;Note=Hypothetical protein.;Transcript_evidence=DQ246094 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0207951-00
Chr08	irgsp1_rep	five_prime_UTR	6303848	6303849	.	+	.	Parent=Os08t0207951-00
Chr08	irgsp1_rep	CDS	6303850	6304320	.	+	0	Parent=Os08t0207951-00
Chr08	irgsp1_rep	mRNA	6313873	6314560	.	-	.	ID=Os08t0208200-01;Name=Os08t0208200-01;Locus_id=Os08g0208200;Note=Peptidase aspartic%2C catalytic domain containing protein.;Transcript_evidence=AK062824 (DDBJ%2C Best hit);ORF_evidence=B9FZL6 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=001-107-F06;TENOR=Os08t0208200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	6314559	6314560	.	-	.	Parent=Os08t0208200-01
Chr08	irgsp1_rep	CDS	6314079	6314558	.	-	0	Parent=Os08t0208200-01
Chr08	irgsp1_rep	three_prime_UTR	6313873	6314078	.	-	.	Parent=Os08t0208200-01
Chr08	irgsp1_rep	mRNA	6319060	6319437	.	-	.	ID=Os08t0208300-00;Name=Os08t0208300-00;Locus_id=Os08g0208300;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001061250.1 (RefSeq);TENOR=Os08t0208300-00;KEGG=Os08t0208300-00
Chr08	irgsp1_rep	CDS	6319060	6319437	.	-	0	Parent=Os08t0208300-00
Chr08	irgsp1_rep	mRNA	6319161	6322636	.	+	.	ID=Os08t0208400-01;Name=Os08t0208400-01;Locus_id=Os08g0208400;Note=Conserved hypothetical protein.;Transcript_evidence=AK102509 (DDBJ%2C Best hit);ORF_evidence=Q948C7 (UniProt);NIAS_FLcDNA=J033095G06;TENOR=Os08t0208400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	6319161	6319487	.	+	.	Parent=Os08t0208400-01
Chr08	irgsp1_rep	CDS	6319488	6319652	.	+	0	Parent=Os08t0208400-01
Chr08	irgsp1_rep	three_prime_UTR	6319653	6319661	.	+	.	Parent=Os08t0208400-01
Chr08	irgsp1_rep	three_prime_UTR	6319802	6322353	.	+	.	Parent=Os08t0208400-01
Chr08	irgsp1_rep	three_prime_UTR	6322440	6322636	.	+	.	Parent=Os08t0208400-01
Chr08	irgsp1_rep	mRNA	6319262	6324373	.	+	.	ID=Os08t0208400-02;Name=Os08t0208400-02;Locus_id=Os08g0208400;Note=Transposon%2C En/Spm-like domain containing protein.;Transcript_evidence=AK066265 (DDBJ%2C Best hit);ORF_evidence=Q0P1B0 (UniProt);InterPro=Transposon%2C En/Spm-like (IPR004242);NIAS_FLcDNA=J013059M15;Expression=AK066265;TENOR=Os08t0208400-02;KEGG=Os08t0208400-02
Chr08	irgsp1_rep	five_prime_UTR	6319262	6319661	.	+	.	Parent=Os08t0208400-02
Chr08	irgsp1_rep	CDS	6319802	6322288	.	+	0	Parent=Os08t0208400-02
Chr08	irgsp1_rep	three_prime_UTR	6322289	6322353	.	+	.	Parent=Os08t0208400-02
Chr08	irgsp1_rep	three_prime_UTR	6322440	6322527	.	+	.	Parent=Os08t0208400-02
Chr08	irgsp1_rep	three_prime_UTR	6323416	6324373	.	+	.	Parent=Os08t0208400-02
Chr08	irgsp1_rep	mRNA	6334289	6339617	.	+	.	ID=Os08t0208700-01;Name=Os08t0208700-01;Locus_id=Os08g0208700;Note=Zinc finger%2C BED-type predicted domain containing protein.;Transcript_evidence=AK068849 (DDBJ%2C Best hit);ORF_evidence=Q10JD3 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677);InterPro=Zinc finger%2C BED-type predicted (IPR003656),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J013168N22;TENOR=Os08t0208700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	6334289	6334717	.	+	.	Parent=Os08t0208700-01
Chr08	irgsp1_rep	CDS	6334718	6334949	.	+	0	Parent=Os08t0208700-01
Chr08	irgsp1_rep	CDS	6336007	6336426	.	+	2	Parent=Os08t0208700-01
Chr08	irgsp1_rep	CDS	6336956	6337557	.	+	2	Parent=Os08t0208700-01
Chr08	irgsp1_rep	three_prime_UTR	6337558	6338795	.	+	.	Parent=Os08t0208700-01
Chr08	irgsp1_rep	three_prime_UTR	6338880	6338948	.	+	.	Parent=Os08t0208700-01
Chr08	irgsp1_rep	three_prime_UTR	6339058	6339139	.	+	.	Parent=Os08t0208700-01
Chr08	irgsp1_rep	three_prime_UTR	6339275	6339617	.	+	.	Parent=Os08t0208700-01
Chr08	irgsp1_rep	mRNA	6358448	6359451	.	+	.	ID=Os08t0209000-00;Name=Os08t0209000-00;Locus_id=Os08g0209000;Note=Conserved hypothetical protein.;Transcript_evidence=AK110651 (DDBJ%2C Secondary hit);ORF_evidence=NP_001175437.1 (RefSeq);TENOR=Os08t0209000-00
Chr08	irgsp1_rep	five_prime_UTR	6358448	6358529	.	+	.	Parent=Os08t0209000-00
Chr08	irgsp1_rep	five_prime_UTR	6358616	6358836	.	+	.	Parent=Os08t0209000-00
Chr08	irgsp1_rep	CDS	6358837	6358864	.	+	0	Parent=Os08t0209000-00
Chr08	irgsp1_rep	CDS	6358955	6359058	.	+	2	Parent=Os08t0209000-00
Chr08	irgsp1_rep	three_prime_UTR	6359059	6359189	.	+	.	Parent=Os08t0209000-00
Chr08	irgsp1_rep	three_prime_UTR	6359204	6359451	.	+	.	Parent=Os08t0209000-00
Chr08	irgsp1_rep	mRNA	6432276	6434158	.	-	.	ID=Os08t0210300-01;Name=Os08t0210300-01;Locus_id=Os08g0210300;Note=Similar to H0502G05.7 protein.;Transcript_evidence=AK064592 (DDBJ%2C Best hit);ORF_evidence=Q01JF9 (UniProt);NIAS_FLcDNA=002-112-G06;TENOR=Os08t0210300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	6434158	6434158	.	-	.	Parent=Os08t0210300-01
Chr08	irgsp1_rep	CDS	6433912	6434157	.	-	0	Parent=Os08t0210300-01
Chr08	irgsp1_rep	three_prime_UTR	6432276	6433911	.	-	.	Parent=Os08t0210300-01
Chr08	irgsp1_rep	mRNA	6527009	6527269	.	+	.	ID=Os08t0211025-00;Name=Os08t0211025-00;Locus_id=Os08g0211025;Note=Hypothetical protein.;Transcript_evidence=FP097651 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0211025-00
Chr08	irgsp1_rep	five_prime_UTR	6527009	6527009	.	+	.	Parent=Os08t0211025-00
Chr08	irgsp1_rep	CDS	6527010	6527269	.	+	0	Parent=Os08t0211025-00
Chr08	irgsp1_rep	mRNA	6553984	6585906	.	+	.	ID=Os08t0211750-01;Name=Os08t0211750-01;Locus_id=Os08g0211750;Note=Conserved hypothetical protein.;Transcript_evidence=AK241154 (DDBJ%2C Best hit);ORF_evidence=NP_001175717.1 (RefSeq);NIAS_FLcDNA=J065113N01;TENOR=Os08t0211750-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	6553984	6554192	.	+	.	Parent=Os08t0211750-01
Chr08	irgsp1_rep	CDS	6554193	6554246	.	+	0	Parent=Os08t0211750-01
Chr08	irgsp1_rep	CDS	6555766	6555828	.	+	0	Parent=Os08t0211750-01
Chr08	irgsp1_rep	CDS	6585601	6585714	.	+	0	Parent=Os08t0211750-01
Chr08	irgsp1_rep	three_prime_UTR	6585715	6585906	.	+	.	Parent=Os08t0211750-01
Chr08	irgsp1_rep	mRNA	6585028	6586115	.	-	.	ID=Os08t0213200-00;Name=Os08t0213200-00;Locus_id=Os08g0213200;Note=Hypothetical conserved gene.;Transcript_evidence=CT829029 (DDBJ%2C Secondary hit);ORF_evidence=A2YSE9 (UniProt);TENOR=Os08t0213200-00;KEGG=Os08t0213200-00
Chr08	irgsp1_rep	five_prime_UTR	6586045	6586115	.	-	.	Parent=Os08t0213200-00
Chr08	irgsp1_rep	five_prime_UTR	6585730	6585738	.	-	.	Parent=Os08t0213200-00
Chr08	irgsp1_rep	CDS	6585618	6585729	.	-	0	Parent=Os08t0213200-00
Chr08	irgsp1_rep	CDS	6585059	6585477	.	-	2	Parent=Os08t0213200-00
Chr08	irgsp1_rep	three_prime_UTR	6585028	6585058	.	-	.	Parent=Os08t0213200-00
Chr08	irgsp1_rep	mRNA	6598294	6603374	.	+	.	ID=Os08t0213400-01;Name=Os08t0213400-01;Locus_id=Os08g0213400;Note=Conserved hypothetical protein.;Transcript_evidence=AK065398 (DDBJ%2C Best hit);ORF_evidence=NP_001175441.1 (RefSeq);NIAS_FLcDNA=J013022L16;Expression=AK065398;TENOR=Os08t0213400-01;KEGG=Os08t0213400-01
Chr08	irgsp1_rep	five_prime_UTR	6598294	6598428	.	+	.	Parent=Os08t0213400-01
Chr08	irgsp1_rep	five_prime_UTR	6598562	6599175	.	+	.	Parent=Os08t0213400-01
Chr08	irgsp1_rep	CDS	6599176	6599241	.	+	0	Parent=Os08t0213400-01
Chr08	irgsp1_rep	CDS	6602378	6602520	.	+	0	Parent=Os08t0213400-01
Chr08	irgsp1_rep	CDS	6602966	6603068	.	+	1	Parent=Os08t0213400-01
Chr08	irgsp1_rep	three_prime_UTR	6603069	6603374	.	+	.	Parent=Os08t0213400-01
Chr08	irgsp1_rep	mRNA	6599157	6603374	.	+	.	ID=Os08t0213400-02;Name=Os08t0213400-02;Locus_id=Os08g0213400;Note=Similar to cDNA clone:J013022L16%2C full insert sequence.;Transcript_evidence=AK105081 (DDBJ%2C Best hit);ORF_evidence=B7EAV6 (UniProt);NIAS_FLcDNA=001-046-B07;TENOR=Os08t0213400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	6599157	6599241	.	+	.	Parent=Os08t0213400-02
Chr08	irgsp1_rep	five_prime_UTR	6602378	6602496	.	+	.	Parent=Os08t0213400-02
Chr08	irgsp1_rep	CDS	6602497	6602520	.	+	0	Parent=Os08t0213400-02
Chr08	irgsp1_rep	CDS	6602966	6603115	.	+	0	Parent=Os08t0213400-02
Chr08	irgsp1_rep	three_prime_UTR	6603116	6603374	.	+	.	Parent=Os08t0213400-02
Chr08	irgsp1_rep	mRNA	6616927	6617180	.	+	.	ID=Os08t0213816-00;Name=Os08t0213816-00;Locus_id=Os08g0213816;Note=Conserved hypothetical protein.;Transcript_evidence=EU951430 (DDBJ);ORF_evidence=Q65WW4 (UniProt);TENOR=Os08t0213816-00
Chr08	irgsp1_rep	CDS	6616927	6617115	.	+	0	Parent=Os08t0213816-00
Chr08	irgsp1_rep	three_prime_UTR	6617116	6617180	.	+	.	Parent=Os08t0213816-00
Chr08	irgsp1_rep	mRNA	6626915	6627830	.	-	.	ID=Os08t0214233-01;Name=Os08t0214233-01;Locus_id=Os08g0214233;Note=Conserved hypothetical protein.;Transcript_evidence=AK241331 (DDBJ%2C Best hit);ORF_evidence=NP_001175438.1 (RefSeq);NIAS_FLcDNA=J065144C21;TENOR=Os08t0214233-01;KEGG=Os08t0214233-01
Chr08	irgsp1_rep	five_prime_UTR	6627566	6627830	.	-	.	Parent=Os08t0214233-01
Chr08	irgsp1_rep	five_prime_UTR	6627330	6627490	.	-	.	Parent=Os08t0214233-01
Chr08	irgsp1_rep	CDS	6627003	6627329	.	-	0	Parent=Os08t0214233-01
Chr08	irgsp1_rep	three_prime_UTR	6626915	6627002	.	-	.	Parent=Os08t0214233-01
Chr08	irgsp1_rep	mRNA	6670593	6671933	.	+	.	ID=Os08t0214300-00;Name=Os08t0214300-00;Locus_id=Os08g0214300;Note=Hypothetical conserved gene.;Transcript_evidence=CT830840 (DDBJ%2C Secondary hit);ORF_evidence=Q6YWP4 (UniProt);TENOR=Os08t0214300-00;KEGG=Os08t0214300-00
Chr08	irgsp1_rep	five_prime_UTR	6670593	6670597	.	+	.	Parent=Os08t0214300-00
Chr08	irgsp1_rep	CDS	6670598	6671035	.	+	0	Parent=Os08t0214300-00
Chr08	irgsp1_rep	three_prime_UTR	6671036	6671815	.	+	.	Parent=Os08t0214300-00
Chr08	irgsp1_rep	three_prime_UTR	6671826	6671933	.	+	.	Parent=Os08t0214300-00
Chr08	irgsp1_rep	mRNA	6712297	6713348	.	+	.	ID=Os08t0214600-01;Name=Os08t0214600-01;Locus_id=Os08g0214600;Note=Conserved hypothetical protein.;Transcript_evidence=AK288825 (DDBJ%2C Best hit);ORF_evidence=Q8S637 (UniProt);NIAS_FLcDNA=J090073I22;TENOR=Os08t0214600-01
Chr08	irgsp1_rep	five_prime_UTR	6712297	6713002	.	+	.	Parent=Os08t0214600-01
Chr08	irgsp1_rep	CDS	6713003	6713083	.	+	0	Parent=Os08t0214600-01
Chr08	irgsp1_rep	three_prime_UTR	6713084	6713348	.	+	.	Parent=Os08t0214600-01
Chr08	irgsp1_rep	mRNA	6719347	6720055	.	+	.	ID=Os08t0214900-00;Name=Os08t0214900-00;Locus_id=Os08g0214900;Note=Hypothetical conserved gene.;Transcript_evidence=CT835981 (DDBJ%2C Best hit);ORF_evidence=NP_001175439.1 (RefSeq);TENOR=Os08t0214900-00;KEGG=Os08t0214900-00
Chr08	irgsp1_rep	five_prime_UTR	6719347	6719347	.	+	.	Parent=Os08t0214900-00
Chr08	irgsp1_rep	CDS	6719348	6719899	.	+	0	Parent=Os08t0214900-00
Chr08	irgsp1_rep	three_prime_UTR	6719900	6720055	.	+	.	Parent=Os08t0214900-00
Chr08	irgsp1_rep	mRNA	6728264	6732694	.	+	.	ID=Os08t0215200-01;Name=Os08t0215200-01;Locus_id=Os08g0215200;Note=Conserved hypothetical protein.;Transcript_evidence=AK072536 (DDBJ%2C Best hit);ORF_evidence=Q2QSV4 (UniProt);NIAS_FLcDNA=J023133P19;TENOR=Os08t0215200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	6728264	6728672	.	+	.	Parent=Os08t0215200-01
Chr08	irgsp1_rep	five_prime_UTR	6729761	6729850	.	+	.	Parent=Os08t0215200-01
Chr08	irgsp1_rep	five_prime_UTR	6729984	6730046	.	+	.	Parent=Os08t0215200-01
Chr08	irgsp1_rep	CDS	6730047	6730075	.	+	0	Parent=Os08t0215200-01
Chr08	irgsp1_rep	CDS	6730164	6730431	.	+	1	Parent=Os08t0215200-01
Chr08	irgsp1_rep	three_prime_UTR	6730432	6732390	.	+	.	Parent=Os08t0215200-01
Chr08	irgsp1_rep	three_prime_UTR	6732507	6732694	.	+	.	Parent=Os08t0215200-01
Chr08	irgsp1_rep	mRNA	6734412	6739686	.	+	.	ID=Os08t0215300-01;Name=Os08t0215300-01;Locus_id=Os08g0215300;Note=Conserved hypothetical protein.;Transcript_evidence=AK121156 (DDBJ%2C Best hit);ORF_evidence=B8BBX6 (UniProt);NIAS_FLcDNA=J023079A20;TENOR=Os08t0215300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	6734412	6735742	.	+	.	Parent=Os08t0215300-01
Chr08	irgsp1_rep	CDS	6735743	6736203	.	+	0	Parent=Os08t0215300-01
Chr08	irgsp1_rep	CDS	6736339	6736369	.	+	1	Parent=Os08t0215300-01
Chr08	irgsp1_rep	three_prime_UTR	6736370	6736532	.	+	.	Parent=Os08t0215300-01
Chr08	irgsp1_rep	three_prime_UTR	6736617	6736803	.	+	.	Parent=Os08t0215300-01
Chr08	irgsp1_rep	three_prime_UTR	6737222	6737415	.	+	.	Parent=Os08t0215300-01
Chr08	irgsp1_rep	three_prime_UTR	6737796	6738169	.	+	.	Parent=Os08t0215300-01
Chr08	irgsp1_rep	three_prime_UTR	6738255	6738320	.	+	.	Parent=Os08t0215300-01
Chr08	irgsp1_rep	three_prime_UTR	6738403	6738444	.	+	.	Parent=Os08t0215300-01
Chr08	irgsp1_rep	three_prime_UTR	6738531	6738771	.	+	.	Parent=Os08t0215300-01
Chr08	irgsp1_rep	three_prime_UTR	6738859	6738910	.	+	.	Parent=Os08t0215300-01
Chr08	irgsp1_rep	three_prime_UTR	6739337	6739686	.	+	.	Parent=Os08t0215300-01
Chr08	irgsp1_rep	mRNA	6736981	6742879	.	-	.	ID=Os08t0215400-00;Name=Os08t0215400-00;Locus_id=Os08g0215400;Note=Conserved hypothetical protein.;Transcript_evidence=CT833581 (DDBJ%2C Best hit);ORF_evidence=Q6YWN5 (UniProt);TENOR=Os08t0215400-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	6742879	6742879	.	-	.	Parent=Os08t0215400-00
Chr08	irgsp1_rep	CDS	6742579	6742878	.	-	0	Parent=Os08t0215400-00
Chr08	irgsp1_rep	three_prime_UTR	6742567	6742578	.	-	.	Parent=Os08t0215400-00
Chr08	irgsp1_rep	three_prime_UTR	6736981	6737215	.	-	.	Parent=Os08t0215400-00
Chr08	irgsp1_rep	mRNA	6792260	6792917	.	+	.	ID=Os08t0215900-00;Name=Os08t0215900-00;Locus_id=Os08g0215900;Note=Hypothetical protein.;Transcript_evidence=CU406124 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os08t0215900-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	6792260	6792532	.	+	.	Parent=Os08t0215900-00
Chr08	irgsp1_rep	CDS	6792533	6792917	.	+	0	Parent=Os08t0215900-00
Chr08	irgsp1_rep	mRNA	6745946	6747840	.	-	.	ID=Os08t0216000-00;Name=Os08t0216000-00;Locus_id=Os08g0216000;Note=Hypothetical conserved gene.;Transcript_evidence=AK330974 (DDBJ);ORF_evidence=B9FZM0 (UniProt);TENOR=Os08t0216000-00;KEGG=Os08t0216000-00
Chr08	irgsp1_rep	five_prime_UTR	6747623	6747840	.	-	.	Parent=Os08t0216000-00
Chr08	irgsp1_rep	CDS	6747143	6747622	.	-	0	Parent=Os08t0216000-00
Chr08	irgsp1_rep	three_prime_UTR	6746165	6747142	.	-	.	Parent=Os08t0216000-00
Chr08	irgsp1_rep	three_prime_UTR	6745946	6746083	.	-	.	Parent=Os08t0216000-00
Chr08	irgsp1_rep	mRNA	6827896	6829236	.	-	.	ID=Os08t0216050-00;Name=Os08t0216050-00;Locus_id=Os08g0216050;Note=Hypothetical conserved gene.;Transcript_evidence=CT830840 (DDBJ%2C Secondary hit);ORF_evidence=Q6YWP4 (UniProt);TENOR=Os08t0216050-00;KEGG=Os08t0216050-00
Chr08	irgsp1_rep	five_prime_UTR	6829232	6829236	.	-	.	Parent=Os08t0216050-00
Chr08	irgsp1_rep	CDS	6828794	6829231	.	-	0	Parent=Os08t0216050-00
Chr08	irgsp1_rep	three_prime_UTR	6828014	6828793	.	-	.	Parent=Os08t0216050-00
Chr08	irgsp1_rep	three_prime_UTR	6827896	6828003	.	-	.	Parent=Os08t0216050-00
Chr08	irgsp1_rep	mRNA	6842089	6843002	.	+	.	ID=Os08t0216300-01;Name=Os08t0216300-01;Locus_id=Os08g0216300;Note=Conserved hypothetical protein.;Transcript_evidence=AK241331 (DDBJ%2C Secondary hit);ORF_evidence=NP_001175438.1 (RefSeq);TENOR=Os08t0216300-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	6842089	6842351	.	+	.	Parent=Os08t0216300-01
Chr08	irgsp1_rep	five_prime_UTR	6842427	6842587	.	+	.	Parent=Os08t0216300-01
Chr08	irgsp1_rep	CDS	6842588	6842914	.	+	0	Parent=Os08t0216300-01
Chr08	irgsp1_rep	three_prime_UTR	6842915	6843002	.	+	.	Parent=Os08t0216300-01
Chr08	irgsp1_rep	mRNA	6852674	6852927	.	-	.	ID=Os08t0216450-00;Name=Os08t0216450-00;Locus_id=Os08g0216450;Note=Conserved hypothetical protein.;Transcript_evidence=EU951430 (DDBJ);ORF_evidence=Q65WW4 (UniProt);TENOR=Os08t0216450-00
Chr08	irgsp1_rep	CDS	6852739	6852927	.	-	0	Parent=Os08t0216450-00
Chr08	irgsp1_rep	three_prime_UTR	6852674	6852738	.	-	.	Parent=Os08t0216450-00
Chr08	irgsp1_rep	mRNA	6866467	6870682	.	-	.	ID=Os08t0216600-01;Name=Os08t0216600-01;Locus_id=Os08g0216600;Note=Similar to cDNA clone:J013022L16%2C full insert sequence.;Transcript_evidence=AK105081 (DDBJ%2C Best hit);ORF_evidence=B7EAV6 (UniProt);NIAS_FLcDNA=001-046-B07;TENOR=Os08t0216600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	6870598	6870682	.	-	.	Parent=Os08t0216600-01
Chr08	irgsp1_rep	five_prime_UTR	6867345	6867463	.	-	.	Parent=Os08t0216600-01
Chr08	irgsp1_rep	CDS	6867321	6867344	.	-	0	Parent=Os08t0216600-01
Chr08	irgsp1_rep	CDS	6866726	6866875	.	-	0	Parent=Os08t0216600-01
Chr08	irgsp1_rep	three_prime_UTR	6866467	6866725	.	-	.	Parent=Os08t0216600-01
Chr08	irgsp1_rep	mRNA	6891099	6893671	.	+	.	ID=Os08t0216900-01;Name=Os08t0216900-01;Locus_id=Os08g0216900;Note=Conserved hypothetical protein.;Transcript_evidence=AK064706 (DDBJ%2C Best hit);ORF_evidence=A2YSE6 (UniProt);NIAS_FLcDNA=002-118-A05;Expression=AK064706;TENOR=Os08t0216900-01;KEGG=Os08t0216900-01
Chr08	irgsp1_rep	five_prime_UTR	6891099	6891376	.	+	.	Parent=Os08t0216900-01
Chr08	irgsp1_rep	five_prime_UTR	6891693	6891770	.	+	.	Parent=Os08t0216900-01
Chr08	irgsp1_rep	five_prime_UTR	6892910	6892920	.	+	.	Parent=Os08t0216900-01
Chr08	irgsp1_rep	CDS	6892921	6893032	.	+	0	Parent=Os08t0216900-01
Chr08	irgsp1_rep	CDS	6893176	6893612	.	+	2	Parent=Os08t0216900-01
Chr08	irgsp1_rep	three_prime_UTR	6893613	6893671	.	+	.	Parent=Os08t0216900-01
Chr08	irgsp1_rep	mRNA	6942146	6948943	.	-	.	ID=Os08t0217050-01;Name=Os08t0217050-01;Locus_id=Os08g0217050;Note=Similar to H0124E07.9 protein.;Transcript_evidence=AK288477 (DDBJ%2C Best hit);ORF_evidence=Q25AH4 (UniProt);NIAS_FLcDNA=J090038C09;TENOR=Os08t0217050-01
Chr08	irgsp1_rep	five_prime_UTR	6948348	6948943	.	-	.	Parent=Os08t0217050-01
Chr08	irgsp1_rep	five_prime_UTR	6947949	6948014	.	-	.	Parent=Os08t0217050-01
Chr08	irgsp1_rep	five_prime_UTR	6943397	6943659	.	-	.	Parent=Os08t0217050-01
Chr08	irgsp1_rep	CDS	6943214	6943396	.	-	0	Parent=Os08t0217050-01
Chr08	irgsp1_rep	CDS	6942920	6943120	.	-	0	Parent=Os08t0217050-01
Chr08	irgsp1_rep	three_prime_UTR	6942146	6942919	.	-	.	Parent=Os08t0217050-01
Chr08	irgsp1_rep	mRNA	7085914	7086571	.	+	.	ID=Os08t0217800-00;Name=Os08t0217800-00;Locus_id=Os08g0217800;Note=Hypothetical protein.;Transcript_evidence=CU406124 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;TENOR=Os08t0217800-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	7085914	7086186	.	+	.	Parent=Os08t0217800-00
Chr08	irgsp1_rep	CDS	7086187	7086571	.	+	0	Parent=Os08t0217800-00
Chr08	irgsp1_rep	mRNA	7165471	7166548	.	-	.	ID=Os08t0218700-01;Name=Os08t0218700-01;Locus_id=Os08g0218700;Note=Conserved hypothetical protein.;Transcript_evidence=AK069940 (DDBJ%2C Best hit);ORF_evidence=Q6YUE5 (UniProt);NIAS_FLcDNA=J023038L08;Expression=AK069940;TENOR=Os08t0218700-01;KEGG=Os08t0218700-01
Chr08	irgsp1_rep	five_prime_UTR	7166488	7166548	.	-	.	Parent=Os08t0218700-01
Chr08	irgsp1_rep	CDS	7165813	7166487	.	-	0	Parent=Os08t0218700-01
Chr08	irgsp1_rep	three_prime_UTR	7165471	7165812	.	-	.	Parent=Os08t0218700-01
Chr08	irgsp1_rep	mRNA	7203560	7205848	.	-	.	ID=Os08t0219100-01;Name=Os08t0219100-01;Locus_id=Os08g0219100;Note=Similar to cDNA clone:J023038L08%2C full insert sequence.;Transcript_evidence=AK106996 (DDBJ%2C Best hit);ORF_evidence=B7EH42 (UniProt);NIAS_FLcDNA=002-120-B10;Expression=AK106996;TENOR=Os08t0219100-01;KEGG=Os08t0219100-01
Chr08	irgsp1_rep	five_prime_UTR	7205778	7205848	.	-	.	Parent=Os08t0219100-01
Chr08	irgsp1_rep	CDS	7205427	7205777	.	-	0	Parent=Os08t0219100-01
Chr08	irgsp1_rep	three_prime_UTR	7203560	7205426	.	-	.	Parent=Os08t0219100-01
Chr08	irgsp1_rep	mRNA	7325157	7327754	.	-	.	ID=Os08t0220400-01;Name=Os08t0220400-01;Locus_id=Os08g0220400;CGSNL Gene Symbol=PME24;CGSNL Gene Name=PECTIN METHYLESTERASE 24;Oryzabase Gene Symbol Synonym(s)=OsPME24;Oryzabase Gene Name Synonym(s)=pectin methylesterase 24;Note=Pectin lyase fold/virulence factor domain containing protein.;Transcript_evidence=AK106909 (DDBJ%2C Best hit);ORF_evidence=A2YSG3 (UniProt);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),Pectinesterase%2C active site (IPR018040);NIAS_FLcDNA=002-119-A05;Oryzabase=13188;Expression=AK106909;TENOR=Os08t0220400-01;KEGG=Os08t0220400-01
Chr08	irgsp1_rep	five_prime_UTR	7327686	7327754	.	-	.	Parent=Os08t0220400-01
Chr08	irgsp1_rep	CDS	7327220	7327685	.	-	0	Parent=Os08t0220400-01
Chr08	irgsp1_rep	CDS	7325472	7326190	.	-	2	Parent=Os08t0220400-01
Chr08	irgsp1_rep	three_prime_UTR	7325157	7325471	.	-	.	Parent=Os08t0220400-01
Chr08	irgsp1_rep	mRNA	7325507	7326193	.	+	.	ID=Os08t0220500-00;Name=Os08t0220500-00;Locus_id=Os08g0220500;Note=Hypothetical protein.;Transcript_evidence=EU943103 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0220500-00
Chr08	irgsp1_rep	five_prime_UTR	7325507	7325594	.	+	.	Parent=Os08t0220500-00
Chr08	irgsp1_rep	CDS	7325595	7326193	.	+	0	Parent=Os08t0220500-00
Chr08	irgsp1_rep	mRNA	7339066	7348077	.	-	.	ID=Os08t0220600-01;Name=Os08t0220600-01;Locus_id=Os08g0220600;Oryzabase Gene Symbol Synonym(s)=OsVIL4%2C OsVIL1;Oryzabase Gene Name Synonym(s)=VIN3-LIKE 4%2C VERNALIZATION INSENSITIVE 3-LIKE 1;Note=Fibronectin%2C type III domain containing protein.;Transcript_evidence=AK105274 (DDBJ%2C Best hit);ORF_evidence=B8BBY4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Fibronectin%2C type III (IPR003961);NIAS_FLcDNA=001-115-H08;Oryzabase=11846;Expression=AK105274;TENOR=Os08t0220600-01;KEGG=Os08t0220600-01
Chr08	irgsp1_rep	five_prime_UTR	7347935	7348077	.	-	.	Parent=Os08t0220600-01
Chr08	irgsp1_rep	five_prime_UTR	7347531	7347609	.	-	.	Parent=Os08t0220600-01
Chr08	irgsp1_rep	five_prime_UTR	7347101	7347406	.	-	.	Parent=Os08t0220600-01
Chr08	irgsp1_rep	five_prime_UTR	7341719	7341726	.	-	.	Parent=Os08t0220600-01
Chr08	irgsp1_rep	CDS	7341054	7341718	.	-	0	Parent=Os08t0220600-01
Chr08	irgsp1_rep	CDS	7340386	7340711	.	-	1	Parent=Os08t0220600-01
Chr08	irgsp1_rep	CDS	7339311	7340212	.	-	2	Parent=Os08t0220600-01
Chr08	irgsp1_rep	three_prime_UTR	7339066	7339310	.	-	.	Parent=Os08t0220600-01
Chr08	irgsp1_rep	mRNA	7341428	7348049	.	-	.	ID=Os08t0220600-02;Name=Os08t0220600-02;Locus_id=Os08g0220600;Oryzabase Gene Symbol Synonym(s)=OsVIL4%2C OsVIL1;Oryzabase Gene Name Synonym(s)=VIN3-LIKE 4%2C VERNALIZATION INSENSITIVE 3-LIKE 1;Note=Hypothetical conserved gene.;Transcript_evidence=AK062408 (DDBJ%2C Best hit);ORF_evidence=B8BBY4 (UniProt);NIAS_FLcDNA=001-102-E10;Oryzabase=11846;Expression=AK062408;TENOR=Os08t0220600-02;KEGG=Os08t0220600-02
Chr08	irgsp1_rep	five_prime_UTR	7347935	7348049	.	-	.	Parent=Os08t0220600-02
Chr08	irgsp1_rep	five_prime_UTR	7347531	7347609	.	-	.	Parent=Os08t0220600-02
Chr08	irgsp1_rep	five_prime_UTR	7347386	7347406	.	-	.	Parent=Os08t0220600-02
Chr08	irgsp1_rep	five_prime_UTR	7347101	7347192	.	-	.	Parent=Os08t0220600-02
Chr08	irgsp1_rep	five_prime_UTR	7341719	7341726	.	-	.	Parent=Os08t0220600-02
Chr08	irgsp1_rep	CDS	7341428	7341718	.	-	0	Parent=Os08t0220600-02
Chr08	irgsp1_rep	mRNA	7341433	7343203	.	-	.	ID=Os08t0220600-03;Name=Os08t0220600-03;Locus_id=Os08g0220600;Oryzabase Gene Symbol Synonym(s)=OsVIL4%2C OsVIL1;Oryzabase Gene Name Synonym(s)=VIN3-LIKE 4%2C VERNALIZATION INSENSITIVE 3-LIKE 1;Note=Hypothetical conserved gene.;Transcript_evidence=AK063389 (DDBJ%2C Best hit);ORF_evidence=B8BBY4 (UniProt);NIAS_FLcDNA=001-114-G12;Oryzabase=11846;TENOR=Os08t0220600-03
Chr08	irgsp1_rep	five_prime_UTR	7341719	7343203	.	-	.	Parent=Os08t0220600-03
Chr08	irgsp1_rep	CDS	7341433	7341718	.	-	0	Parent=Os08t0220600-03
Chr08	irgsp1_rep	mRNA	7363845	7367943	.	-	.	ID=Os08t0221300-00;Name=Os08t0221300-00;Locus_id=Os08g0221300;Note=Conserved hypothetical protein.;Transcript_evidence=CT837571 (DDBJ%2C Best hit);ORF_evidence=NP_001175442.1 (RefSeq);TENOR=Os08t0221300-00
Chr08	irgsp1_rep	five_prime_UTR	7367943	7367943	.	-	.	Parent=Os08t0221300-00
Chr08	irgsp1_rep	CDS	7367835	7367942	.	-	0	Parent=Os08t0221300-00
Chr08	irgsp1_rep	CDS	7367500	7367744	.	-	0	Parent=Os08t0221300-00
Chr08	irgsp1_rep	CDS	7367311	7367410	.	-	1	Parent=Os08t0221300-00
Chr08	irgsp1_rep	CDS	7365421	7365432	.	-	0	Parent=Os08t0221300-00
Chr08	irgsp1_rep	three_prime_UTR	7365376	7365420	.	-	.	Parent=Os08t0221300-00
Chr08	irgsp1_rep	three_prime_UTR	7363845	7364069	.	-	.	Parent=Os08t0221300-00
Chr08	irgsp1_rep	mRNA	7410180	7411388	.	+	.	ID=Os08t0222100-01;Name=Os08t0222100-01;Locus_id=Os08g0222100;Note=Conserved hypothetical protein.;Transcript_evidence=AK070815 (DDBJ%2C Best hit);ORF_evidence=B8BBY5 (UniProt);NIAS_FLcDNA=J023074M19;Expression=AK070815;TENOR=Os08t0222100-01;KEGG=Os08t0222100-01
Chr08	irgsp1_rep	five_prime_UTR	7410180	7410256	.	+	.	Parent=Os08t0222100-01
Chr08	irgsp1_rep	CDS	7410257	7410556	.	+	0	Parent=Os08t0222100-01
Chr08	irgsp1_rep	CDS	7410745	7411125	.	+	0	Parent=Os08t0222100-01
Chr08	irgsp1_rep	three_prime_UTR	7411126	7411388	.	+	.	Parent=Os08t0222100-01
Chr08	irgsp1_rep	mRNA	7451363	7452016	.	+	.	ID=Os08t0222800-00;Name=Os08t0222800-00;Locus_id=Os08g0222800;Note=Similar to cDNA clone:J023038L08%2C full insert sequence.;Transcript_evidence=ab initio prediction;ORF_evidence=B7EH42 (UniProt);TENOR=Os08t0222800-00;KEGG=Os08t0222800-00
Chr08	irgsp1_rep	CDS	7451363	7452016	.	+	0	Parent=Os08t0222800-00
Chr08	irgsp1_rep	mRNA	7488653	7492184	.	+	.	ID=Os08t0223700-00;Name=Os08t0223700-00;Locus_id=Os08g0223700;Note=EMB1135 (EMBRYO DEFECTIVE 1135).;Transcript_evidence=ab initio prediction;ORF_evidence=Q25AI3 (UniProt);TENOR=Os08t0223700-00;KEGG=Os08t0223700-00
Chr08	irgsp1_rep	CDS	7488653	7489261	.	+	0	Parent=Os08t0223700-00
Chr08	irgsp1_rep	CDS	7490553	7490726	.	+	0	Parent=Os08t0223700-00
Chr08	irgsp1_rep	CDS	7490815	7490945	.	+	0	Parent=Os08t0223700-00
Chr08	irgsp1_rep	CDS	7491068	7491144	.	+	1	Parent=Os08t0223700-00
Chr08	irgsp1_rep	CDS	7492099	7492184	.	+	2	Parent=Os08t0223700-00
Chr08	irgsp1_rep	mRNA	7495162	7500893	.	+	.	ID=Os08t0223766-00;Name=Os08t0223766-00;Locus_id=Os08g0223766;Note=Similar to H0702G05.10 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q25AI3 (UniProt);TENOR=Os08t0223766-00;KEGG=Os08t0223766-00
Chr08	irgsp1_rep	CDS	7495162	7495374	.	+	0	Parent=Os08t0223766-00
Chr08	irgsp1_rep	CDS	7496155	7496287	.	+	0	Parent=Os08t0223766-00
Chr08	irgsp1_rep	CDS	7497952	7498012	.	+	2	Parent=Os08t0223766-00
Chr08	irgsp1_rep	CDS	7498221	7498284	.	+	1	Parent=Os08t0223766-00
Chr08	irgsp1_rep	CDS	7498485	7498613	.	+	0	Parent=Os08t0223766-00
Chr08	irgsp1_rep	CDS	7498852	7498995	.	+	0	Parent=Os08t0223766-00
Chr08	irgsp1_rep	CDS	7499444	7499546	.	+	0	Parent=Os08t0223766-00
Chr08	irgsp1_rep	CDS	7499724	7499855	.	+	2	Parent=Os08t0223766-00
Chr08	irgsp1_rep	CDS	7500469	7500893	.	+	2	Parent=Os08t0223766-00
Chr08	irgsp1_rep	mRNA	7495525	7495588	.	+	.	ID=Os08t0223799-00;Name=Os08t0223799-00;Locus_id=Os08g0223799;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0223799-00
Chr08	irgsp1_rep	exon	7495525	7495588	.	+	.	Parent=Os08t0223799-00
Chr08	irgsp1_rep	mRNA	7501641	7510161	.	+	.	ID=Os08t0223833-00;Name=Os08t0223833-00;Locus_id=Os08g0223833;Note=Similar to H0702G05.10 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q25AI3 (UniProt);TENOR=Os08t0223833-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	7501641	7501650	.	+	0	Parent=Os08t0223833-00
Chr08	irgsp1_rep	CDS	7501978	7502048	.	+	2	Parent=Os08t0223833-00
Chr08	irgsp1_rep	CDS	7502429	7502520	.	+	0	Parent=Os08t0223833-00
Chr08	irgsp1_rep	CDS	7502707	7502800	.	+	1	Parent=Os08t0223833-00
Chr08	irgsp1_rep	CDS	7504034	7504131	.	+	0	Parent=Os08t0223833-00
Chr08	irgsp1_rep	CDS	7504548	7504683	.	+	1	Parent=Os08t0223833-00
Chr08	irgsp1_rep	CDS	7504771	7504877	.	+	0	Parent=Os08t0223833-00
Chr08	irgsp1_rep	CDS	7505123	7505218	.	+	1	Parent=Os08t0223833-00
Chr08	irgsp1_rep	CDS	7505315	7505402	.	+	1	Parent=Os08t0223833-00
Chr08	irgsp1_rep	CDS	7505513	7505630	.	+	0	Parent=Os08t0223833-00
Chr08	irgsp1_rep	CDS	7506348	7506463	.	+	2	Parent=Os08t0223833-00
Chr08	irgsp1_rep	CDS	7506967	7507044	.	+	0	Parent=Os08t0223833-00
Chr08	irgsp1_rep	CDS	7507179	7507297	.	+	0	Parent=Os08t0223833-00
Chr08	irgsp1_rep	CDS	7508158	7508211	.	+	1	Parent=Os08t0223833-00
Chr08	irgsp1_rep	CDS	7508602	7508704	.	+	1	Parent=Os08t0223833-00
Chr08	irgsp1_rep	CDS	7509687	7509795	.	+	0	Parent=Os08t0223833-00
Chr08	irgsp1_rep	CDS	7510130	7510161	.	+	2	Parent=Os08t0223833-00
Chr08	irgsp1_rep	mRNA	7540127	7547972	.	+	.	ID=Os08t0223900-01;Name=Os08t0223900-01;Locus_id=Os08g0223900;RAP-DB Gene Symbol Synonym(s)=OsOSC12/OsPTS1%2C OsOSC12%2C OsPTS1;RAP-DB Gene Name Synonym(s)=Oxidosqualene cyclase 12%2C Poaceatapetol synthase 1;Oryzabase Gene Symbol Synonym(s)=OsOSC12/OsPTS1%2C OsOSC12%2C OsPTS1%2C OSC12%2C PTS1;Oryzabase Gene Name Synonym(s)=Oxidosqualene cyclase 12%2C poaceatapetol synthase 1;Note=Bicyclic triterpene poaceatapetol synthase%2C Pollen coat formation;Transcript_evidence=BT063365 (maize);ORF_evidence=Q0J778;GO=Molecular Function: intramolecular transferase activity (GO:0016866);InterPro=Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid (IPR008930),Squalene cyclase (IPR018333),Squalene cyclase%2C N-terminal (IPR032697),Squalene cyclase%2C C-terminal (IPR032696),Terpene synthase%2C conserved site (IPR002365);Manual Curation=October 26%2C 2018;Literature_PMID=29426861;Oryzabase=22266;TENOR=Os08t0223900-00;KEGG=Os08t0223900-00 (EC:5.4.99.8)
Chr08	irgsp1_rep	five_prime_UTR	7540127	7540131	.	+	.	Parent=Os08t0223900-01
Chr08	irgsp1_rep	CDS	7540132	7540326	.	+	0	Parent=Os08t0223900-01
Chr08	irgsp1_rep	CDS	7540576	7540761	.	+	0	Parent=Os08t0223900-01
Chr08	irgsp1_rep	CDS	7540884	7540973	.	+	0	Parent=Os08t0223900-01
Chr08	irgsp1_rep	CDS	7541091	7541288	.	+	0	Parent=Os08t0223900-01
Chr08	irgsp1_rep	CDS	7541626	7541710	.	+	0	Parent=Os08t0223900-01
Chr08	irgsp1_rep	CDS	7542101	7542267	.	+	2	Parent=Os08t0223900-01
Chr08	irgsp1_rep	CDS	7542592	7542780	.	+	0	Parent=Os08t0223900-01
Chr08	irgsp1_rep	CDS	7543525	7543638	.	+	0	Parent=Os08t0223900-01
Chr08	irgsp1_rep	CDS	7543733	7543852	.	+	0	Parent=Os08t0223900-01
Chr08	irgsp1_rep	CDS	7543932	7544054	.	+	0	Parent=Os08t0223900-01
Chr08	irgsp1_rep	CDS	7544559	7544657	.	+	0	Parent=Os08t0223900-01
Chr08	irgsp1_rep	CDS	7545077	7545133	.	+	0	Parent=Os08t0223900-01
Chr08	irgsp1_rep	CDS	7545614	7545660	.	+	0	Parent=Os08t0223900-01
Chr08	irgsp1_rep	CDS	7545733	7545876	.	+	1	Parent=Os08t0223900-01
Chr08	irgsp1_rep	CDS	7546370	7546547	.	+	1	Parent=Os08t0223900-01
Chr08	irgsp1_rep	CDS	7547005	7547085	.	+	0	Parent=Os08t0223900-01
Chr08	irgsp1_rep	CDS	7547268	7547351	.	+	0	Parent=Os08t0223900-01
Chr08	irgsp1_rep	CDS	7547758	7547958	.	+	0	Parent=Os08t0223900-01
Chr08	irgsp1_rep	three_prime_UTR	7547959	7547972	.	+	.	Parent=Os08t0223900-01
Chr08	irgsp1_rep	mRNA	7545583	7551989	.	-	.	ID=Os08t0224000-01;Name=Os08t0224000-01;Locus_id=Os08g0224000;Oryzabase Gene Symbol Synonym(s)=OsOSC12;Oryzabase Gene Name Synonym(s)=oxidosqualene cyclase 12;Note=NB-ARC domain containing protein.;Transcript_evidence=AK240669 (DDBJ%2C Best hit);ORF_evidence=Q2QR01 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: protein binding (GO:0005515),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),Leucine-rich repeat (IPR001611),NB-ARC (IPR002182);NIAS_FLcDNA=J033066N05;Oryzabase=17986;TENOR=Os08t0224000-01;KEGG=Os08t0224000-01
Chr08	irgsp1_rep	five_prime_UTR	7551652	7551989	.	-	.	Parent=Os08t0224000-01
Chr08	irgsp1_rep	five_prime_UTR	7551331	7551344	.	-	.	Parent=Os08t0224000-01
Chr08	irgsp1_rep	CDS	7548829	7551330	.	-	0	Parent=Os08t0224000-01
Chr08	irgsp1_rep	CDS	7545756	7545791	.	-	0	Parent=Os08t0224000-01
Chr08	irgsp1_rep	three_prime_UTR	7545583	7545755	.	-	.	Parent=Os08t0224000-01
Chr08	irgsp1_rep	mRNA	7553773	7558719	.	+	.	ID=Os08t0224100-01;Name=Os08t0224100-01;Locus_id=Os08g0224100;Oryzabase Gene Symbol Synonym(s)=OsDPK1%2C DPK1%2C MKKK32%2C OsMKKK32%2C MAPKKK32;Oryzabase Gene Name Synonym(s)=dual-specificity protein kinase 1;Note=Similar to Serine/thronine protein kinase-like protein.;Transcript_evidence=AK111800 (DDBJ%2C Best hit);ORF_evidence=Q94C42 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023112L21;Oryzabase=14412;Expression=AK111800;TENOR=Os08t0224100-01;KEGG=Os08t0224100-01
Chr08	irgsp1_rep	five_prime_UTR	7553773	7554066	.	+	.	Parent=Os08t0224100-01
Chr08	irgsp1_rep	five_prime_UTR	7554585	7554648	.	+	.	Parent=Os08t0224100-01
Chr08	irgsp1_rep	CDS	7554649	7555562	.	+	0	Parent=Os08t0224100-01
Chr08	irgsp1_rep	CDS	7558024	7558363	.	+	1	Parent=Os08t0224100-01
Chr08	irgsp1_rep	three_prime_UTR	7558364	7558719	.	+	.	Parent=Os08t0224100-01
Chr08	irgsp1_rep	mRNA	7553808	7558712	.	+	.	ID=Os08t0224100-02;Name=Os08t0224100-02;Locus_id=Os08g0224100;Oryzabase Gene Symbol Synonym(s)=OsDPK1%2C DPK1%2C MKKK32%2C OsMKKK32%2C MAPKKK32;Oryzabase Gene Name Synonym(s)=dual-specificity protein kinase 1;Note=Similar to Serine/thronine protein kinase-like protein.;Transcript_evidence=AK121704 (DDBJ%2C Best hit),AK099003 (DDBJ%2C Best hit);ORF_evidence=Q94C42 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033074L20,J013109F16;Oryzabase=14412;TENOR=Os08t0224100-02
Chr08	irgsp1_rep	five_prime_UTR	7553808	7554066	.	+	.	Parent=Os08t0224100-02
Chr08	irgsp1_rep	five_prime_UTR	7554585	7554648	.	+	.	Parent=Os08t0224100-02
Chr08	irgsp1_rep	CDS	7554649	7555562	.	+	0	Parent=Os08t0224100-02
Chr08	irgsp1_rep	CDS	7558024	7558363	.	+	1	Parent=Os08t0224100-02
Chr08	irgsp1_rep	three_prime_UTR	7558364	7558712	.	+	.	Parent=Os08t0224100-02
Chr08	irgsp1_rep	mRNA	7554832	7558706	.	+	.	ID=Os08t0224100-03;Name=Os08t0224100-03;Locus_id=Os08g0224100;Oryzabase Gene Symbol Synonym(s)=OsDPK1%2C DPK1%2C MKKK32%2C OsMKKK32%2C MAPKKK32;Oryzabase Gene Name Synonym(s)=dual-specificity protein kinase 1;Note=Similar to Serine/threonine protein kinase.;Transcript_evidence=AK111601 (DDBJ%2C Best hit);ORF_evidence=Q94C42 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013095H06;Oryzabase=14412;Expression=AK111601;TENOR=Os08t0224100-03;KEGG=Os08t0224100-03
Chr08	irgsp1_rep	CDS	7554832	7555562	.	+	0	Parent=Os08t0224100-03
Chr08	irgsp1_rep	CDS	7558024	7558363	.	+	1	Parent=Os08t0224100-03
Chr08	irgsp1_rep	three_prime_UTR	7558364	7558706	.	+	.	Parent=Os08t0224100-03
Chr08	irgsp1_rep	mRNA	7554714	7558408	.	-	.	ID=Os08t0224150-00;Name=Os08t0224150-00;Locus_id=Os08g0224150;Note=Hypothetical protein.;Transcript_evidence=tplb0062i19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0224150-00
Chr08	irgsp1_rep	five_prime_UTR	7558339	7558408	.	-	.	Parent=Os08t0224150-00
Chr08	irgsp1_rep	CDS	7558066	7558338	.	-	0	Parent=Os08t0224150-00
Chr08	irgsp1_rep	three_prime_UTR	7558018	7558065	.	-	.	Parent=Os08t0224150-00
Chr08	irgsp1_rep	three_prime_UTR	7554714	7555558	.	-	.	Parent=Os08t0224150-00
Chr08	irgsp1_rep	mRNA	7559100	7563171	.	-	.	ID=Os08t0224200-01;Name=Os08t0224200-01;Locus_id=Os08g0224200;Note=Similar to H0702G05.3 protein.;Transcript_evidence=AK101331 (DDBJ%2C Best hit);ORF_evidence=Q25AJ0 (UniProt);InterPro=YTH domain (IPR007275);NIAS_FLcDNA=J033034H04;TENOR=Os08t0224200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	7563170	7563171	.	-	.	Parent=Os08t0224200-01
Chr08	irgsp1_rep	CDS	7563049	7563169	.	-	0	Parent=Os08t0224200-01
Chr08	irgsp1_rep	CDS	7562293	7562363	.	-	2	Parent=Os08t0224200-01
Chr08	irgsp1_rep	CDS	7562045	7562216	.	-	0	Parent=Os08t0224200-01
Chr08	irgsp1_rep	CDS	7561630	7561706	.	-	2	Parent=Os08t0224200-01
Chr08	irgsp1_rep	CDS	7561260	7561557	.	-	0	Parent=Os08t0224200-01
Chr08	irgsp1_rep	CDS	7561071	7561138	.	-	2	Parent=Os08t0224200-01
Chr08	irgsp1_rep	CDS	7560474	7560959	.	-	0	Parent=Os08t0224200-01
Chr08	irgsp1_rep	CDS	7560107	7560319	.	-	0	Parent=Os08t0224200-01
Chr08	irgsp1_rep	CDS	7559620	7559973	.	-	0	Parent=Os08t0224200-01
Chr08	irgsp1_rep	three_prime_UTR	7559100	7559619	.	-	.	Parent=Os08t0224200-01
Chr08	irgsp1_rep	mRNA	7559283	7560864	.	-	.	ID=Os08t0224200-02;Name=Os08t0224200-02;Locus_id=Os08g0224200;Note=Similar to H0702G05.3 protein.;Transcript_evidence=AK068253 (DDBJ%2C Best hit);ORF_evidence=Q25AJ0 (UniProt);InterPro=YTH domain (IPR007275);NIAS_FLcDNA=J013147L08;Expression=AK068253;TENOR=Os08t0224200-02;KEGG=Os08t0224200-02
Chr08	irgsp1_rep	five_prime_UTR	7560822	7560864	.	-	.	Parent=Os08t0224200-02
Chr08	irgsp1_rep	CDS	7560474	7560821	.	-	0	Parent=Os08t0224200-02
Chr08	irgsp1_rep	CDS	7560107	7560319	.	-	0	Parent=Os08t0224200-02
Chr08	irgsp1_rep	CDS	7559620	7559973	.	-	0	Parent=Os08t0224200-02
Chr08	irgsp1_rep	three_prime_UTR	7559283	7559619	.	-	.	Parent=Os08t0224200-02
Chr08	irgsp1_rep	mRNA	7559814	7560619	.	+	.	ID=Os08t0224250-00;Name=Os08t0224250-00;Locus_id=Os08g0224250;Note=Non-protein coding transcript.;Transcript_evidence=BT016473 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0224250-00
Chr08	irgsp1_rep	exon	7559814	7559960	.	+	.	Parent=Os08t0224250-00
Chr08	irgsp1_rep	exon	7560094	7560333	.	+	.	Parent=Os08t0224250-00
Chr08	irgsp1_rep	exon	7560486	7560619	.	+	.	Parent=Os08t0224250-00
Chr08	irgsp1_rep	mRNA	7568558	7573900	.	-	.	ID=Os08t0224300-01;Name=Os08t0224300-01;Locus_id=Os08g0224300;RAP-DB Gene Symbol Synonym(s)=ARE1%2C OsARE1;RAP-DB Gene Name Synonym(s)=abnormal cytokinin response (abc) 1-1 repressor1;CGSNL Gene Symbol=ARE1;CGSNL Gene Name=ABNORMAL CYTOKININ RESPONSE 1-1 REPRESSOR 1;Oryzabase Gene Symbol Synonym(s)=OsARE1;Oryzabase Gene Name Synonym(s)=abnormal cytokinin response 1-1 repressor1%2C abnormal cytokinin response 1-1 repressor 1%2C abc1-1 repressor 1;Note=Determination of the grain yield%2C Modulation of nitrogen utilization;Transcript_evidence=AK242847;ORF_evidence=B9FZN7;GO=Cellular Component: integral component of membrane (GO:0016021);InterPro=Chloroplast envelope membrane protein%2C CemA (IPR004282);NIAS_FLcDNA=J090072E23;Manual Curation=March 1%2C 2018;Literature_PMID=29467406;Oryzabase=22581;TENOR=Os08t0224300-01;KEGG=Os08t0224300-01;Subcellular location=chloroplast (GO:0009507)
Chr08	irgsp1_rep	five_prime_UTR	7573780	7573900	.	-	.	Parent=Os08t0224300-01
Chr08	irgsp1_rep	five_prime_UTR	7573485	7573649	.	-	.	Parent=Os08t0224300-01
Chr08	irgsp1_rep	CDS	7572879	7573484	.	-	0	Parent=Os08t0224300-01
Chr08	irgsp1_rep	CDS	7572200	7572285	.	-	0	Parent=Os08t0224300-01
Chr08	irgsp1_rep	CDS	7571790	7571963	.	-	1	Parent=Os08t0224300-01
Chr08	irgsp1_rep	CDS	7571531	7571645	.	-	1	Parent=Os08t0224300-01
Chr08	irgsp1_rep	CDS	7570943	7571040	.	-	0	Parent=Os08t0224300-01
Chr08	irgsp1_rep	CDS	7569935	7570070	.	-	1	Parent=Os08t0224300-01
Chr08	irgsp1_rep	CDS	7569422	7569490	.	-	0	Parent=Os08t0224300-01
Chr08	irgsp1_rep	three_prime_UTR	7569350	7569421	.	-	.	Parent=Os08t0224300-01
Chr08	irgsp1_rep	three_prime_UTR	7568558	7569057	.	-	.	Parent=Os08t0224300-01
Chr08	irgsp1_rep	mRNA	7583487	7588332	.	+	.	ID=Os08t0224500-01;Name=Os08t0224500-01;Locus_id=Os08g0224500;Note=Similar to 3-glucanase.;Transcript_evidence=AK106897 (DDBJ%2C Best hit);ORF_evidence=NP_001151032.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=002-118-H02;Expression=AK106897;TENOR=Os08t0224500-01;KEGG=Os08t0224500-01
Chr08	irgsp1_rep	five_prime_UTR	7583487	7584033	.	+	.	Parent=Os08t0224500-01
Chr08	irgsp1_rep	CDS	7584034	7584380	.	+	0	Parent=Os08t0224500-01
Chr08	irgsp1_rep	CDS	7586821	7587151	.	+	1	Parent=Os08t0224500-01
Chr08	irgsp1_rep	CDS	7587396	7588202	.	+	0	Parent=Os08t0224500-01
Chr08	irgsp1_rep	three_prime_UTR	7588203	7588332	.	+	.	Parent=Os08t0224500-01
Chr08	irgsp1_rep	mRNA	7591562	7596941	.	+	.	ID=Os08t0224700-01;Name=Os08t0224700-01;Locus_id=Os08g0224700;CGSNL Gene Symbol=RPN2A;CGSNL Gene Name=19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 2A;Oryzabase Gene Symbol Synonym(s)=OsRpn2a%2C Rpn2a;Oryzabase Gene Name Synonym(s)=19S regulatory particle non-ATPase subunit 2a%2C RP non-ATPase 2a;Note=Similar to 26S proteasome subunit RPN2a.;Transcript_evidence=AK121754 (DDBJ%2C Best hit);ORF_evidence=Q6XJG7 (UniProt);GO=Biological Process: regulation of protein catabolic process (GO:0042176),Cellular Component: proteasome complex (GO:0000502),Molecular Function: binding (GO:0005488),Molecular Function: enzyme regulator activity (GO:0030234);InterPro=Proteasome/cyclosome%2C regulatory subunit (IPR002015),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),26S proteasome regulatory complex%2C non-ATPase subcomplex%2C Rpn2/Psmd1 subunit (IPR016642);NIAS_FLcDNA=J033088B02;Oryzabase=20562;Expression=AK121754;TENOR=Os08t0224700-01;KEGG=Os08t0224700-01
Chr08	irgsp1_rep	five_prime_UTR	7591562	7591667	.	+	.	Parent=Os08t0224700-01
Chr08	irgsp1_rep	CDS	7591668	7591819	.	+	0	Parent=Os08t0224700-01
Chr08	irgsp1_rep	CDS	7592762	7592931	.	+	1	Parent=Os08t0224700-01
Chr08	irgsp1_rep	CDS	7593029	7593143	.	+	2	Parent=Os08t0224700-01
Chr08	irgsp1_rep	CDS	7593229	7593397	.	+	1	Parent=Os08t0224700-01
Chr08	irgsp1_rep	CDS	7593527	7593661	.	+	0	Parent=Os08t0224700-01
Chr08	irgsp1_rep	CDS	7593751	7594070	.	+	0	Parent=Os08t0224700-01
Chr08	irgsp1_rep	CDS	7594334	7594469	.	+	1	Parent=Os08t0224700-01
Chr08	irgsp1_rep	CDS	7594566	7594814	.	+	0	Parent=Os08t0224700-01
Chr08	irgsp1_rep	CDS	7594909	7595129	.	+	0	Parent=Os08t0224700-01
Chr08	irgsp1_rep	CDS	7595248	7595506	.	+	1	Parent=Os08t0224700-01
Chr08	irgsp1_rep	CDS	7595606	7596313	.	+	0	Parent=Os08t0224700-01
Chr08	irgsp1_rep	CDS	7596437	7596766	.	+	0	Parent=Os08t0224700-01
Chr08	irgsp1_rep	three_prime_UTR	7596767	7596941	.	+	.	Parent=Os08t0224700-01
Chr08	irgsp1_rep	mRNA	7594625	7596941	.	+	.	ID=Os08t0224700-02;Name=Os08t0224700-02;Locus_id=Os08g0224700;CGSNL Gene Symbol=RPN2A;CGSNL Gene Name=19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 2A;Oryzabase Gene Symbol Synonym(s)=OsRpn2a%2C Rpn2a;Oryzabase Gene Name Synonym(s)=19S regulatory particle non-ATPase subunit 2a%2C RP non-ATPase 2a;Note=Similar to predicted protein.;Transcript_evidence=AK060950 (DDBJ%2C Best hit);ORF_evidence=Q6XJG7 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Proteasome/cyclosome%2C regulatory subunit (IPR002015),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=006-201-F07;Oryzabase=20562;Expression=AK060950;TENOR=Os08t0224700-02;KEGG=Os08t0224700-02
Chr08	irgsp1_rep	five_prime_UTR	7594625	7594625	.	+	.	Parent=Os08t0224700-02
Chr08	irgsp1_rep	CDS	7594626	7594814	.	+	0	Parent=Os08t0224700-02
Chr08	irgsp1_rep	CDS	7594909	7595129	.	+	0	Parent=Os08t0224700-02
Chr08	irgsp1_rep	CDS	7595248	7595506	.	+	1	Parent=Os08t0224700-02
Chr08	irgsp1_rep	CDS	7595606	7596313	.	+	0	Parent=Os08t0224700-02
Chr08	irgsp1_rep	CDS	7596437	7596766	.	+	0	Parent=Os08t0224700-02
Chr08	irgsp1_rep	three_prime_UTR	7596767	7596941	.	+	.	Parent=Os08t0224700-02
Chr08	irgsp1_rep	mRNA	7605599	7610209	.	+	.	ID=Os08t0224800-01;Name=Os08t0224800-01;Locus_id=Os08g0224800;Note=Hypothetical conserved gene.;Transcript_evidence=AK243481 (DDBJ%2C Best hit);ORF_evidence=Q6Z918 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=Cytidylyltransferase (IPR004820),Cytidyltransferase-related (IPR004821),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J100072P04;TENOR=Os08t0224800-01;KEGG=Os08t0224800-01 (EC:2.7.7.15)
Chr08	irgsp1_rep	five_prime_UTR	7605599	7605767	.	+	.	Parent=Os08t0224800-01
Chr08	irgsp1_rep	five_prime_UTR	7606994	7607026	.	+	.	Parent=Os08t0224800-01
Chr08	irgsp1_rep	CDS	7607027	7607397	.	+	0	Parent=Os08t0224800-01
Chr08	irgsp1_rep	CDS	7607872	7608107	.	+	1	Parent=Os08t0224800-01
Chr08	irgsp1_rep	CDS	7608238	7608410	.	+	2	Parent=Os08t0224800-01
Chr08	irgsp1_rep	CDS	7608701	7608772	.	+	0	Parent=Os08t0224800-01
Chr08	irgsp1_rep	CDS	7608880	7608947	.	+	0	Parent=Os08t0224800-01
Chr08	irgsp1_rep	CDS	7609074	7609191	.	+	1	Parent=Os08t0224800-01
Chr08	irgsp1_rep	CDS	7609325	7609384	.	+	0	Parent=Os08t0224800-01
Chr08	irgsp1_rep	CDS	7609477	7609599	.	+	0	Parent=Os08t0224800-01
Chr08	irgsp1_rep	CDS	7609719	7609790	.	+	0	Parent=Os08t0224800-01
Chr08	irgsp1_rep	three_prime_UTR	7609791	7610209	.	+	.	Parent=Os08t0224800-01
Chr08	irgsp1_rep	mRNA	7607234	7609254	.	-	.	ID=Os08t0224901-00;Name=Os08t0224901-00;Locus_id=Os08g0224901;Note=Non-protein coding transcript.;Transcript_evidence=tplb0056c04 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os08t0224901-00
Chr08	irgsp1_rep	exon	7609000	7609254	.	-	.	Parent=Os08t0224901-00
Chr08	irgsp1_rep	exon	7608529	7608775	.	-	.	Parent=Os08t0224901-00
Chr08	irgsp1_rep	exon	7607880	7608137	.	-	.	Parent=Os08t0224901-00
Chr08	irgsp1_rep	exon	7607234	7607400	.	-	.	Parent=Os08t0224901-00
Chr08	irgsp1_rep	mRNA	7612317	7614842	.	-	.	ID=Os08t0225000-01;Name=Os08t0225000-01;Locus_id=Os08g0225000;RAP-DB Gene Symbol Synonym(s)=ZL16%2C OsHAD1;RAP-DB Gene Name Synonym(s)=ZEBRA LEAF 16%2C &beta%3B-hydroxyacyl-ACP dehydratase 1%2C beta-hydroxyacyl-ACP dehydratase 1;CGSNL Gene Symbol=ZL16;CGSNL Gene Name=ZEBRA LEAF 16;Oryzabase Gene Symbol Synonym(s)=OsHAD1%2C HAD1;Oryzabase Gene Name Synonym(s)=zebra leaf 16%2C Beta-hydroxyacyl-ACP dehydrate 1;Note=&beta%3B-hydroxyacyl-ACP dehydratase%2C Regulation of fatty acid synthesis%2C Chloroplast development;Transcript_evidence=FP094110 (Bamboo);ORF_evidence=A0A0P0XD59;GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Molecular Function: hydro-lyase activity (GO:0016836),Cellular Component: cytoplasm (GO:0005737);InterPro=HotDog domain superfamily (IPR029069),Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ (IPR010084),Beta-hydroxydecanoyl thiol ester dehydrase%2C FabA/FabZ (IPR013114);Manual Curation=June 29%2C 2018;Literature_PMID=29946330;Oryzabase=22432;TENOR=Os08t0225000-00;Subcellular location=chloroplast (GO:0009507)
Chr08	irgsp1_rep	five_prime_UTR	7614808	7614842	.	-	.	Parent=Os08t0225000-01
Chr08	irgsp1_rep	CDS	7614615	7614807	.	-	0	Parent=Os08t0225000-01
Chr08	irgsp1_rep	CDS	7614445	7614505	.	-	2	Parent=Os08t0225000-01
Chr08	irgsp1_rep	CDS	7613577	7613721	.	-	1	Parent=Os08t0225000-01
Chr08	irgsp1_rep	CDS	7612645	7612896	.	-	0	Parent=Os08t0225000-01
Chr08	irgsp1_rep	three_prime_UTR	7612317	7612644	.	-	.	Parent=Os08t0225000-01
Chr08	irgsp1_rep	mRNA	7616789	7620327	.	+	.	ID=Os08t0225050-01;Name=Os08t0225050-01;Locus_id=Os08g0225050;Note=Hypothetical gene.;Transcript_evidence=AK318552 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J075143E10;TENOR=Os08t0225050-01;KEGG=Os08t0225050-01
Chr08	irgsp1_rep	five_prime_UTR	7616789	7617111	.	+	.	Parent=Os08t0225050-01
Chr08	irgsp1_rep	five_prime_UTR	7617240	7617309	.	+	.	Parent=Os08t0225050-01
Chr08	irgsp1_rep	five_prime_UTR	7617897	7619576	.	+	.	Parent=Os08t0225050-01
Chr08	irgsp1_rep	CDS	7619577	7619912	.	+	0	Parent=Os08t0225050-01
Chr08	irgsp1_rep	three_prime_UTR	7619913	7620327	.	+	.	Parent=Os08t0225050-01
Chr08	irgsp1_rep	mRNA	7616789	7620106	.	-	.	ID=Os08t0225100-00;Name=Os08t0225100-00;Locus_id=Os08g0225100;Note=Similar to predicted protein.;Transcript_evidence=CT836008 (DDBJ%2C Best hit);ORF_evidence=P0C941 (UniProt);GO=Cellular Component: endoplasmic reticulum (GO:0005783);InterPro=Reticulon (IPR003388);TENOR=Os08t0225100-00;KEGG=Os08t0225100-00
Chr08	irgsp1_rep	CDS	7620045	7620106	.	-	0	Parent=Os08t0225100-00
Chr08	irgsp1_rep	CDS	7617897	7618038	.	-	1	Parent=Os08t0225100-00
Chr08	irgsp1_rep	CDS	7617240	7617309	.	-	0	Parent=Os08t0225100-00
Chr08	irgsp1_rep	CDS	7616996	7617111	.	-	2	Parent=Os08t0225100-00
Chr08	irgsp1_rep	three_prime_UTR	7616789	7616995	.	-	.	Parent=Os08t0225100-00
Chr08	irgsp1_rep	mRNA	7652630	7664411	.	+	.	ID=Os08t0225400-01;Name=Os08t0225400-01;Locus_id=Os08g0225400;Note=Similar to OSIGBa0113I13.9 protein.;Transcript_evidence=AK071700 (DDBJ%2C Best hit);ORF_evidence=Q01KD8 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: acetylglucosaminyltransferase activity (GO:0008375);InterPro=Glycosyl transferase%2C family 14 (IPR003406);NIAS_FLcDNA=J023108H08;TENOR=Os08t0225400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	7652630	7652687	.	+	.	Parent=Os08t0225400-01
Chr08	irgsp1_rep	five_prime_UTR	7653937	7653970	.	+	.	Parent=Os08t0225400-01
Chr08	irgsp1_rep	CDS	7653971	7654414	.	+	0	Parent=Os08t0225400-01
Chr08	irgsp1_rep	CDS	7654893	7654991	.	+	0	Parent=Os08t0225400-01
Chr08	irgsp1_rep	CDS	7659056	7659156	.	+	0	Parent=Os08t0225400-01
Chr08	irgsp1_rep	CDS	7659248	7659319	.	+	1	Parent=Os08t0225400-01
Chr08	irgsp1_rep	CDS	7659513	7659603	.	+	1	Parent=Os08t0225400-01
Chr08	irgsp1_rep	CDS	7659786	7659866	.	+	0	Parent=Os08t0225400-01
Chr08	irgsp1_rep	CDS	7663122	7663184	.	+	0	Parent=Os08t0225400-01
Chr08	irgsp1_rep	CDS	7663273	7663395	.	+	0	Parent=Os08t0225400-01
Chr08	irgsp1_rep	CDS	7663494	7663532	.	+	0	Parent=Os08t0225400-01
Chr08	irgsp1_rep	CDS	7663884	7664012	.	+	0	Parent=Os08t0225400-01
Chr08	irgsp1_rep	three_prime_UTR	7664013	7664411	.	+	.	Parent=Os08t0225400-01
Chr08	irgsp1_rep	mRNA	7686865	7687583	.	+	.	ID=Os08t0225700-00;Name=Os08t0225700-00;Locus_id=Os08g0225700;Note=Hypothetical conserved gene.;Transcript_evidence=tplb0009k06 (Wheat FLcDNA);ORF_evidence=Q7F0Z7 (UniProt);TENOR=Os08t0225700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	7686865	7687204	.	+	.	Parent=Os08t0225700-00
Chr08	irgsp1_rep	CDS	7687205	7687534	.	+	0	Parent=Os08t0225700-00
Chr08	irgsp1_rep	three_prime_UTR	7687535	7687583	.	+	.	Parent=Os08t0225700-00
Chr08	irgsp1_rep	mRNA	7691858	7693642	.	-	.	ID=Os08t0225900-00;Name=Os08t0225900-00;Locus_id=Os08g0225900;CGSNL Gene Symbol=MSL30;CGSNL Gene Name=MYB/SANT-LIKE 30;Oryzabase Gene Symbol Synonym(s)=OsMSL30;Oryzabase Gene Name Synonym(s)=Myb/SANT-LIKE 30;Note=Hypothetical conserved gene.;Transcript_evidence=AK064584 (DDBJ%2C Secondary hit);ORF_evidence=Q7F0Z6 (UniProt);InterPro=MYB-like (IPR017877);Oryzabase=22964;Expression=AK064584;TENOR=Os08t0225900-00;KEGG=Os08t0225900-00
Chr08	irgsp1_rep	five_prime_UTR	7693298	7693642	.	-	.	Parent=Os08t0225900-00
Chr08	irgsp1_rep	CDS	7692044	7693297	.	-	0	Parent=Os08t0225900-00
Chr08	irgsp1_rep	three_prime_UTR	7691858	7692043	.	-	.	Parent=Os08t0225900-00
Chr08	irgsp1_rep	mRNA	7693777	7694865	.	-	.	ID=Os08t0226000-00;Name=Os08t0226000-00;Locus_id=Os08g0226000;Oryzabase Gene Symbol Synonym(s)=OsMB13%2C MB13;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 13%2C MDC protein with a BTB domain 13%2C MDC protein having BTB domain 13;Note=Similar to speckle-type POZ protein.;Transcript_evidence=tplb0009j09 (Wheat FLcDNA);ORF_evidence=NP_001146855.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);Oryzabase=21207;TENOR=Os08t0226000-00;KEGG=Os08t0226000-00
Chr08	irgsp1_rep	CDS	7694155	7694865	.	-	0	Parent=Os08t0226000-00
Chr08	irgsp1_rep	three_prime_UTR	7693777	7694154	.	-	.	Parent=Os08t0226000-00
Chr08	irgsp1_rep	mRNA	7698342	7699299	.	-	.	ID=Os08t0226100-00;Name=Os08t0226100-00;Locus_id=Os08g0226100;Note=Hypothetical conserved gene.;Transcript_evidence=AK252289 (DDBJ);ORF_evidence=B8BC02 (UniProt);TENOR=Os08t0226100-00;KEGG=Os08t0226100-00
Chr08	irgsp1_rep	CDS	7699057	7699299	.	-	0	Parent=Os08t0226100-00
Chr08	irgsp1_rep	three_prime_UTR	7698342	7699056	.	-	.	Parent=Os08t0226100-00
Chr08	irgsp1_rep	mRNA	7710739	7711320	.	-	.	ID=Os08t0226166-00;Name=Os08t0226166-00;Locus_id=Os08g0226166;Note=Similar to CytoChrome P450 CYP76H18.;Transcript_evidence=ab initio prediction;ORF_evidence=B6TJP9 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os08t0226166-00
Chr08	irgsp1_rep	CDS	7710739	7711320	.	-	0	Parent=Os08t0226166-00
Chr08	irgsp1_rep	mRNA	7711067	7716513	.	+	.	ID=Os08t0226232-00;Name=Os08t0226232-00;Locus_id=Os08g0226232;Note=Hypothetical protein.;Transcript_evidence=tplb0033d13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0226232-00
Chr08	irgsp1_rep	five_prime_UTR	7711067	7711391	.	+	.	Parent=Os08t0226232-00
Chr08	irgsp1_rep	five_prime_UTR	7715738	7715963	.	+	.	Parent=Os08t0226232-00
Chr08	irgsp1_rep	CDS	7715964	7716428	.	+	0	Parent=Os08t0226232-00
Chr08	irgsp1_rep	three_prime_UTR	7716429	7716513	.	+	.	Parent=Os08t0226232-00
Chr08	irgsp1_rep	mRNA	7714178	7716625	.	-	.	ID=Os08t0226300-00;Name=Os08t0226300-00;Locus_id=Os08g0226300;Note=Similar to CytoChrome P450 family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q33AU0 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);TENOR=Os08t0226300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	7715705	7716625	.	-	0	Parent=Os08t0226300-00
Chr08	irgsp1_rep	CDS	7714178	7714222	.	-	0	Parent=Os08t0226300-00
Chr08	irgsp1_rep	mRNA	7717968	7719211	.	+	.	ID=Os08t0226400-00;Name=Os08t0226400-00;Locus_id=Os08g0226400;Oryzabase Gene Symbol Synonym(s)=OsMB19%2C MB19;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 19%2C MDC protein with a BTB domain 19%2C MDC protein having BTB domain 19;Note=Hypothetical conserved gene.;Transcript_evidence=tplb0009j09 (Wheat FLcDNA);ORF_evidence=Q7F0Z3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);Oryzabase=21213;TENOR=Os08t0226400-00;KEGG=Os08t0226400-00
Chr08	irgsp1_rep	five_prime_UTR	7717968	7718113	.	+	.	Parent=Os08t0226400-00
Chr08	irgsp1_rep	CDS	7718114	7719211	.	+	0	Parent=Os08t0226400-00
Chr08	irgsp1_rep	mRNA	7730270	7732702	.	+	.	ID=Os08t0226600-01;Name=Os08t0226600-01;Locus_id=Os08g0226600;Note=Hypothetical gene.;Transcript_evidence=AK100583 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023105O13;Expression=AK100583;TENOR=Os08t0226600-01;KEGG=Os08t0226600-01
Chr08	irgsp1_rep	five_prime_UTR	7730270	7730526	.	+	.	Parent=Os08t0226600-01
Chr08	irgsp1_rep	CDS	7730527	7730696	.	+	0	Parent=Os08t0226600-01
Chr08	irgsp1_rep	CDS	7731025	7731085	.	+	1	Parent=Os08t0226600-01
Chr08	irgsp1_rep	three_prime_UTR	7731086	7732702	.	+	.	Parent=Os08t0226600-01
Chr08	irgsp1_rep	mRNA	7732353	7733632	.	+	.	ID=Os08t0226600-02;Name=Os08t0226600-02;Locus_id=Os08g0226600;Note=Non-protein coding transcript.;Transcript_evidence=AK061458 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=006-307-H09;TENOR=Os08t0226600-02
Chr08	irgsp1_rep	exon	7732353	7732752	.	+	.	Parent=Os08t0226600-02
Chr08	irgsp1_rep	exon	7732827	7733632	.	+	.	Parent=Os08t0226600-02
Chr08	irgsp1_rep	mRNA	7734190	7734875	.	+	.	ID=Os08t0226666-00;Name=Os08t0226666-00;Locus_id=Os08g0226666;Note=Non-protein coding transcript.;Transcript_evidence=CT835606 (DDBJ%2C Secondary hit);ORF_evidence=NONE;TENOR=Os08t0226666-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	exon	7734190	7734551	.	+	.	Parent=Os08t0226666-00
Chr08	irgsp1_rep	exon	7734628	7734875	.	+	.	Parent=Os08t0226666-00
Chr08	irgsp1_rep	mRNA	7740247	7741464	.	+	.	ID=Os08t0226800-00;Name=Os08t0226800-00;Locus_id=Os08g0226800;Oryzabase Gene Symbol Synonym(s)=OsMB16%2C MB16;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 16%2C MDC protein with a BTB domain 16%2C MDC protein having BTB domain 16;Note=Similar to speckle-type POZ protein.;Transcript_evidence=AK357745 (DDBJ);ORF_evidence=NP_001061285.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);Oryzabase=21210;TENOR=Os08t0226800-00;KEGG=Os08t0226800-00
Chr08	irgsp1_rep	five_prime_UTR	7740247	7740372	.	+	.	Parent=Os08t0226800-00
Chr08	irgsp1_rep	CDS	7740373	7741464	.	+	0	Parent=Os08t0226800-00
Chr08	irgsp1_rep	mRNA	7756668	7758169	.	-	.	ID=Os08t0227100-01;Name=Os08t0227100-01;Locus_id=Os08g0227100;Note=Kelch related domain containing protein.;Transcript_evidence=AK071657 (DDBJ%2C Best hit),AK103481 (DDBJ%2C Best hit);ORF_evidence=A2YSK4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);NIAS_FLcDNA=J023100C18,J033130G24;Expression=AK071657;TENOR=Os08t0227100-01;KEGG=Os08t0227100-01
Chr08	irgsp1_rep	five_prime_UTR	7758052	7758169	.	-	.	Parent=Os08t0227100-01
Chr08	irgsp1_rep	CDS	7756891	7758051	.	-	0	Parent=Os08t0227100-01
Chr08	irgsp1_rep	three_prime_UTR	7756668	7756890	.	-	.	Parent=Os08t0227100-01
Chr08	irgsp1_rep	mRNA	7760699	7762222	.	-	.	ID=Os08t0227200-02;Name=Os08t0227200-02;Locus_id=Os08g0227200;Note=Kelch related domain containing protein.;Transcript_evidence=AK060189 (DDBJ%2C Best hit),AK069781 (DDBJ%2C Best hit);ORF_evidence=A2YSK5 (UniProt);NIAS_FLcDNA=001-001-E01,J023031F24;Expression=AK060189;TENOR=Os08t0227200-02;KEGG=Os08t0227200-02
Chr08	irgsp1_rep	five_prime_UTR	7762146	7762222	.	-	.	Parent=Os08t0227200-02
Chr08	irgsp1_rep	five_prime_UTR	7761972	7762067	.	-	.	Parent=Os08t0227200-02
Chr08	irgsp1_rep	CDS	7760904	7761971	.	-	0	Parent=Os08t0227200-02
Chr08	irgsp1_rep	three_prime_UTR	7760699	7760903	.	-	.	Parent=Os08t0227200-02
Chr08	irgsp1_rep	mRNA	7777850	7778536	.	-	.	ID=Os08t0227400-00;Name=Os08t0227400-00;Locus_id=Os08g0227400;Note=Similar to speckle-type POZ protein.;Transcript_evidence=tplb0003d12 (Wheat FLcDNA);ORF_evidence=NP_001146855.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069);TENOR=Os08t0227400-00
Chr08	irgsp1_rep	CDS	7777850	7778536	.	-	0	Parent=Os08t0227400-00
Chr08	irgsp1_rep	mRNA	7778740	7778955	.	-	.	ID=Os08t0227500-00;Name=Os08t0227500-00;Locus_id=Os08g0227500;Note=Similar to speckle-type POZ protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001146855.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=TRAF-like (IPR008974);TENOR=Os08t0227500-00
Chr08	irgsp1_rep	CDS	7778740	7778955	.	-	0	Parent=Os08t0227500-00
Chr08	irgsp1_rep	mRNA	7803012	7807496	.	-	.	ID=Os08t0227900-01;Name=Os08t0227900-01;Locus_id=Os08g0227900;Note=Hypothetical conserved gene.;Transcript_evidence=AK288547 (DDBJ%2C Best hit);ORF_evidence=Q6YZQ1 (UniProt);NIAS_FLcDNA=J090046I18;TENOR=Os08t0227900-01;KEGG=Os08t0227900-01
Chr08	irgsp1_rep	five_prime_UTR	7807023	7807496	.	-	.	Parent=Os08t0227900-01
Chr08	irgsp1_rep	CDS	7806855	7807022	.	-	0	Parent=Os08t0227900-01
Chr08	irgsp1_rep	three_prime_UTR	7803012	7806854	.	-	.	Parent=Os08t0227900-01
Chr08	irgsp1_rep	mRNA	7820316	7821765	.	-	.	ID=Os08t0228100-01;Name=Os08t0228100-01;Locus_id=Os08g0228100;Note=Non-protein coding transcript.;Transcript_evidence=AK107868 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-134-C04;TENOR=Os08t0228100-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	exon	7821696	7821765	.	-	.	Parent=Os08t0228100-01
Chr08	irgsp1_rep	exon	7820799	7820891	.	-	.	Parent=Os08t0228100-01
Chr08	irgsp1_rep	exon	7820316	7820675	.	-	.	Parent=Os08t0228100-01
Chr08	irgsp1_rep	mRNA	7834796	7836523	.	+	.	ID=Os08t0228200-00;Name=Os08t0228200-00;Locus_id=Os08g0228200;Oryzabase Gene Symbol Synonym(s)=OsMB15%2C MB15;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 15%2C MDC protein with a BTB domain 15%2C MDC protein having BTB domain 15;Note=BTB/POZ-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2YSL5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);Oryzabase=21209;TENOR=Os08t0228200-00
Chr08	irgsp1_rep	CDS	7834796	7835868	.	+	0	Parent=Os08t0228200-00
Chr08	irgsp1_rep	CDS	7836343	7836523	.	+	1	Parent=Os08t0228200-00
Chr08	irgsp1_rep	mRNA	7882502	7883098	.	-	.	ID=Os08t0229200-01;Name=Os08t0229200-01;Locus_id=Os08g0229200;Note=Non-protein coding transcript.;Transcript_evidence=AK121274 (DDBJ%2C Best hit),AK062202 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023107D22,001-046-G08;TENOR=Os08t0229200-01
Chr08	irgsp1_rep	exon	7882502	7883098	.	-	.	Parent=Os08t0229200-01
Chr08	irgsp1_rep	mRNA	7892281	7893913	.	-	.	ID=Os08t0229500-01;Name=Os08t0229500-01;Locus_id=Os08g0229500;Note=Hypothetical protein.;Transcript_evidence=AK070783 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023069N02;Expression=AK070783;TENOR=Os08t0229500-01;KEGG=Os08t0229500-01
Chr08	irgsp1_rep	five_prime_UTR	7893266	7893913	.	-	.	Parent=Os08t0229500-01
Chr08	irgsp1_rep	CDS	7893189	7893265	.	-	0	Parent=Os08t0229500-01
Chr08	irgsp1_rep	CDS	7892672	7892918	.	-	1	Parent=Os08t0229500-01
Chr08	irgsp1_rep	three_prime_UTR	7892281	7892671	.	-	.	Parent=Os08t0229500-01
Chr08	irgsp1_rep	mRNA	7892344	7894459	.	+	.	ID=Os08t0229601-01;Name=Os08t0229601-01;Locus_id=Os08g0229601;Note=Hypothetical conserved gene.;Transcript_evidence=AK065192 (DDBJ%2C Best hit);ORF_evidence=A3BQV4 (UniProt);GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exo70 exocyst complex subunit (IPR004140),Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=J013002E11;Expression=AK065192;TENOR=Os08t0229601-01;KEGG=Os08t0229601-01
Chr08	irgsp1_rep	five_prime_UTR	7892344	7892399	.	+	.	Parent=Os08t0229601-01
Chr08	irgsp1_rep	CDS	7892400	7893245	.	+	0	Parent=Os08t0229601-01
Chr08	irgsp1_rep	three_prime_UTR	7893246	7894459	.	+	.	Parent=Os08t0229601-01
Chr08	irgsp1_rep	mRNA	7911799	7916363	.	+	.	ID=Os08t0230000-01;Name=Os08t0230000-01;Locus_id=Os08g0230000;Note=Conserved hypothetical protein.;Transcript_evidence=AK067127 (DDBJ%2C Best hit);ORF_evidence=A3BQV6 (UniProt);NIAS_FLcDNA=J013096C05;Expression=AK067127;TENOR=Os08t0230000-01;KEGG=Os08t0230000-01
Chr08	irgsp1_rep	five_prime_UTR	7911799	7911903	.	+	.	Parent=Os08t0230000-01
Chr08	irgsp1_rep	CDS	7911904	7912384	.	+	0	Parent=Os08t0230000-01
Chr08	irgsp1_rep	CDS	7914135	7914202	.	+	2	Parent=Os08t0230000-01
Chr08	irgsp1_rep	three_prime_UTR	7914203	7914231	.	+	.	Parent=Os08t0230000-01
Chr08	irgsp1_rep	three_prime_UTR	7915843	7916363	.	+	.	Parent=Os08t0230000-01
Chr08	irgsp1_rep	mRNA	7919850	7921536	.	-	.	ID=Os08t0230100-00;Name=Os08t0230100-00;Locus_id=Os08g0230100;Note=Hypothetical conserved gene.;Transcript_evidence=tplb0005k21 (Wheat FLcDNA);ORF_evidence=NP_001146485.1 (RefSeq);TENOR=Os08t0230100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	7920977	7921536	.	-	.	Parent=Os08t0230100-00
Chr08	irgsp1_rep	CDS	7920887	7920976	.	-	0	Parent=Os08t0230100-00
Chr08	irgsp1_rep	CDS	7920414	7920557	.	-	0	Parent=Os08t0230100-00
Chr08	irgsp1_rep	three_prime_UTR	7920392	7920413	.	-	.	Parent=Os08t0230100-00
Chr08	irgsp1_rep	three_prime_UTR	7920022	7920229	.	-	.	Parent=Os08t0230100-00
Chr08	irgsp1_rep	three_prime_UTR	7919850	7919948	.	-	.	Parent=Os08t0230100-00
Chr08	irgsp1_rep	mRNA	7939705	7944303	.	+	.	ID=Os08t0230200-01;Name=Os08t0230200-01;Locus_id=Os08g0230200;Note=Similar to cysteine-type endopeptidase/ ubiquitin thiolesterase.;Transcript_evidence=AK069639 (DDBJ%2C Best hit);ORF_evidence=NP_001149375.1 (RefSeq);NIAS_FLcDNA=J023026D01;TENOR=Os08t0230200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	7939705	7939863	.	+	.	Parent=Os08t0230200-01
Chr08	irgsp1_rep	five_prime_UTR	7940015	7940057	.	+	.	Parent=Os08t0230200-01
Chr08	irgsp1_rep	five_prime_UTR	7941609	7941738	.	+	.	Parent=Os08t0230200-01
Chr08	irgsp1_rep	CDS	7941739	7942629	.	+	0	Parent=Os08t0230200-01
Chr08	irgsp1_rep	CDS	7943185	7943340	.	+	0	Parent=Os08t0230200-01
Chr08	irgsp1_rep	CDS	7943467	7943678	.	+	0	Parent=Os08t0230200-01
Chr08	irgsp1_rep	CDS	7943816	7944008	.	+	1	Parent=Os08t0230200-01
Chr08	irgsp1_rep	three_prime_UTR	7944009	7944303	.	+	.	Parent=Os08t0230200-01
Chr08	irgsp1_rep	mRNA	7941703	7944306	.	+	.	ID=Os08t0230200-02;Name=Os08t0230200-02;Locus_id=Os08g0230200;Note=Similar to cysteine-type endopeptidase/ ubiquitin thiolesterase.;Transcript_evidence=AK060252 (DDBJ%2C Best hit);ORF_evidence=NP_001149375.1 (RefSeq);NIAS_FLcDNA=001-004-D04;TENOR=Os08t0230200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	7941703	7941738	.	+	.	Parent=Os08t0230200-02
Chr08	irgsp1_rep	CDS	7941739	7942629	.	+	0	Parent=Os08t0230200-02
Chr08	irgsp1_rep	CDS	7943185	7943340	.	+	0	Parent=Os08t0230200-02
Chr08	irgsp1_rep	CDS	7943467	7943678	.	+	0	Parent=Os08t0230200-02
Chr08	irgsp1_rep	CDS	7943816	7944008	.	+	1	Parent=Os08t0230200-02
Chr08	irgsp1_rep	three_prime_UTR	7944009	7944306	.	+	.	Parent=Os08t0230200-02
Chr08	irgsp1_rep	mRNA	7947639	7951629	.	-	.	ID=Os08t0230300-00;Name=Os08t0230300-00;Locus_id=Os08g0230300;Oryzabase Gene Symbol Synonym(s)=Os_F0765;Note=Hypothetical conserved gene.;Transcript_evidence=GQ232752 (DDBJ);ORF_evidence=Q6Z1R8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Galactose oxidase/kelch%2C beta-propeller (IPR011043),Kelch-type beta propeller (IPR015915),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17523;TENOR=Os08t0230300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	7951254	7951629	.	-	0	Parent=Os08t0230300-00
Chr08	irgsp1_rep	CDS	7947753	7948723	.	-	2	Parent=Os08t0230300-00
Chr08	irgsp1_rep	three_prime_UTR	7947639	7947752	.	-	.	Parent=Os08t0230300-00
Chr08	irgsp1_rep	mRNA	7948087	7951633	.	+	.	ID=Os08t0230350-00;Name=Os08t0230350-00;Locus_id=Os08g0230350;Note=Non-protein coding transcript.;Transcript_evidence=AK373801 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0230350-00
Chr08	irgsp1_rep	exon	7948087	7948704	.	+	.	Parent=Os08t0230350-00
Chr08	irgsp1_rep	exon	7951231	7951633	.	+	.	Parent=Os08t0230350-00
Chr08	irgsp1_rep	mRNA	7964016	7968546	.	-	.	ID=Os08t0230500-01;Name=Os08t0230500-01;Locus_id=Os08g0230500;Note=Protein of unknown function DUF537 family protein.;Transcript_evidence=AK107589 (DDBJ%2C Best hit);ORF_evidence=B9FZQ0 (UniProt);InterPro=Domain of unknown function DUF88 (IPR021139);NIAS_FLcDNA=002-131-A04;Expression=AK107589;TENOR=Os08t0230500-01;KEGG=Os08t0230500-01
Chr08	irgsp1_rep	five_prime_UTR	7968344	7968546	.	-	.	Parent=Os08t0230500-01
Chr08	irgsp1_rep	five_prime_UTR	7966094	7966098	.	-	.	Parent=Os08t0230500-01
Chr08	irgsp1_rep	CDS	7964501	7966093	.	-	0	Parent=Os08t0230500-01
Chr08	irgsp1_rep	three_prime_UTR	7964016	7964500	.	-	.	Parent=Os08t0230500-01
Chr08	irgsp1_rep	mRNA	7972782	7973478	.	+	.	ID=Os08t0230600-01;Name=Os08t0230600-01;Locus_id=Os08g0230600;Note=LIM%2C zinc-binding domain containing protein.;Transcript_evidence=AK111371 (DDBJ%2C Best hit);ORF_evidence=Q01KE6 (UniProt);NIAS_FLcDNA=002-182-A06;Expression=AK111371;TENOR=Os08t0230600-01;KEGG=Os08t0230600-01
Chr08	irgsp1_rep	five_prime_UTR	7972782	7972929	.	+	.	Parent=Os08t0230600-01
Chr08	irgsp1_rep	CDS	7972930	7973175	.	+	0	Parent=Os08t0230600-01
Chr08	irgsp1_rep	three_prime_UTR	7973176	7973478	.	+	.	Parent=Os08t0230600-01
Chr08	irgsp1_rep	mRNA	7982512	7985309	.	+	.	ID=Os08t0230800-01;Name=Os08t0230800-01;Locus_id=Os08g0230800;Oryzabase Gene Symbol Synonym(s)=OsLecRK paralog;Oryzabase Gene Name Synonym(s)=Lectin Receptor Kinase paralog;Note=Hypothetical conserved gene.;Transcript_evidence=AK243571 (DDBJ%2C Best hit);ORF_evidence=NP_001175447.1 (RefSeq);GO=Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein binding (GO:0005515),Molecular Function: sugar binding (GO:0005529);InterPro=Epidermal growth factor-like%2C type 3 (IPR000742),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480);NIAS_FLcDNA=J100082B08;Oryzabase=19692;TENOR=Os08t0230800-01;KEGG=Os08t0230800-01
Chr08	irgsp1_rep	five_prime_UTR	7982512	7982558	.	+	.	Parent=Os08t0230800-01
Chr08	irgsp1_rep	CDS	7982559	7983830	.	+	0	Parent=Os08t0230800-01
Chr08	irgsp1_rep	CDS	7983943	7984062	.	+	0	Parent=Os08t0230800-01
Chr08	irgsp1_rep	three_prime_UTR	7984063	7985309	.	+	.	Parent=Os08t0230800-01
Chr08	irgsp1_rep	mRNA	7988597	7989786	.	+	.	ID=Os08t0230900-00;Name=Os08t0230900-00;Locus_id=Os08g0230900;Note=Similar to Subtilisin protease (Fragment).;Transcript_evidence=tplb0034o17 (Wheat FLcDNA);ORF_evidence=B3TZE7 (UniProt);TENOR=Os08t0230900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	7988597	7989220	.	+	0	Parent=Os08t0230900-00
Chr08	irgsp1_rep	three_prime_UTR	7989221	7989786	.	+	.	Parent=Os08t0230900-00
Chr08	irgsp1_rep	mRNA	7991097	7993729	.	-	.	ID=Os08t0231100-01;Name=Os08t0231100-01;Locus_id=Os08g0231100;Note=Hypothetical protein.;Transcript_evidence=AK065349 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J013022H13;Expression=AK065349;TENOR=Os08t0231100-01;KEGG=Os08t0231100-01
Chr08	irgsp1_rep	five_prime_UTR	7993673	7993729	.	-	.	Parent=Os08t0231100-01
Chr08	irgsp1_rep	CDS	7993355	7993672	.	-	0	Parent=Os08t0231100-01
Chr08	irgsp1_rep	three_prime_UTR	7991097	7993354	.	-	.	Parent=Os08t0231100-01
Chr08	irgsp1_rep	mRNA	7994404	7995717	.	-	.	ID=Os08t0231400-01;Name=Os08t0231400-01;Locus_id=Os08g0231400;RAP-DB Gene Symbol Synonym(s)=GLP8-12%2C OsGLP8-12;RAP-DB Gene Name Synonym(s)=GERMIN-LIKE PROTEIN 8-12%2C Germin-like protein 8-12;CGSNL Gene Symbol=GLP8-12;CGSNL Gene Name=GERMIN-LIKE PROTEIN 8-12;Oryzabase Gene Symbol Synonym(s)=OsGLP8-12;Oryzabase Gene Name Synonym(s)=Germin-like protein 8-12;Note=Germin-like protein 8-12%2C Disease resistance;Transcript_evidence=AK059812 (Genbank);ORF_evidence=Q6ZCR3 (UniProt);GO=Cellular Component: apoplast (GO:0048046),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),Germin%2C manganese binding site (IPR019780);NIAS_FLcDNA=006-205-B04;Manual Curation=May 26%2C 2009;Literature_PMID=19011003;Oryzabase=8238;Expression=AK059812;TENOR=Os08t0231400-01;KEGG=Os08t0231400-01
Chr08	irgsp1_rep	five_prime_UTR	7995633	7995717	.	-	.	Parent=Os08t0231400-01
Chr08	irgsp1_rep	CDS	7995512	7995632	.	-	0	Parent=Os08t0231400-01
Chr08	irgsp1_rep	CDS	7994639	7995192	.	-	2	Parent=Os08t0231400-01
Chr08	irgsp1_rep	three_prime_UTR	7994404	7994638	.	-	.	Parent=Os08t0231400-01
Chr08	irgsp1_rep	mRNA	8011977	8014326	.	-	.	ID=Os08t0232000-01;Name=Os08t0232000-01;Locus_id=Os08g0232000;Note=Similar to Glucose-6-phosphate isomerase.;Transcript_evidence=AK107754 (DDBJ%2C Best hit);ORF_evidence=B8B0B0 (UniProt);NIAS_FLcDNA=002-133-A02;TENOR=Os08t0232000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	8014092	8014326	.	-	.	Parent=Os08t0232000-01
Chr08	irgsp1_rep	five_prime_UTR	8012072	8012275	.	-	.	Parent=Os08t0232000-01
Chr08	irgsp1_rep	CDS	8011994	8012071	.	-	0	Parent=Os08t0232000-01
Chr08	irgsp1_rep	three_prime_UTR	8011977	8011993	.	-	.	Parent=Os08t0232000-01
Chr08	irgsp1_rep	mRNA	8018574	8021328	.	+	.	ID=Os08t0232100-01;Name=Os08t0232100-01;Locus_id=Os08g0232100;Note=Hypothetical gene.;Transcript_evidence=AK065066 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013001J21;Expression=AK065066;TENOR=Os08t0232100-01;KEGG=Os08t0232100-01
Chr08	irgsp1_rep	five_prime_UTR	8018574	8019007	.	+	.	Parent=Os08t0232100-01
Chr08	irgsp1_rep	five_prime_UTR	8019086	8019167	.	+	.	Parent=Os08t0232100-01
Chr08	irgsp1_rep	five_prime_UTR	8019964	8020176	.	+	.	Parent=Os08t0232100-01
Chr08	irgsp1_rep	CDS	8020177	8020410	.	+	0	Parent=Os08t0232100-01
Chr08	irgsp1_rep	three_prime_UTR	8020411	8021328	.	+	.	Parent=Os08t0232100-01
Chr08	irgsp1_rep	mRNA	8061317	8063491	.	+	.	ID=Os08t0232700-01;Name=Os08t0232700-01;Locus_id=Os08g0232700;CGSNL Gene Symbol=EXO70FX4;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX4;Oryzabase Gene Symbol Synonym(s)=OsEXO70FX4%2C OsExo70FX4%2C OrysaFX4_Exo70;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein FX4;Note=Exo70 exocyst complex subunit family protein.;Transcript_evidence=AK100248 (DDBJ%2C Best hit);ORF_evidence=A2YSN5 (UniProt);GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exo70 exocyst complex subunit (IPR004140),Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=J023059K19;Oryzabase=20346;Expression=AK100248;TENOR=Os08t0232700-01;KEGG=Os08t0232700-01
Chr08	irgsp1_rep	five_prime_UTR	8061317	8061460	.	+	.	Parent=Os08t0232700-01
Chr08	irgsp1_rep	CDS	8061461	8063041	.	+	0	Parent=Os08t0232700-01
Chr08	irgsp1_rep	three_prime_UTR	8063042	8063491	.	+	.	Parent=Os08t0232700-01
Chr08	irgsp1_rep	mRNA	8070577	8070804	.	+	.	ID=Os08t0233000-01;Name=Os08t0233000-01;Locus_id=Os08g0233000;Note=Non-protein coding transcript.;Transcript_evidence=AK058962 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-020-C03;TENOR=Os08t0233000-01
Chr08	irgsp1_rep	exon	8070577	8070804	.	+	.	Parent=Os08t0233000-01
Chr08	irgsp1_rep	mRNA	8104943	8106358	.	+	.	ID=Os08t0233300-01;Name=Os08t0233300-01;Locus_id=Os08g0233300;Note=Similar to cDNA clone:J013061K19%2C full insert sequence.;Transcript_evidence=AK067421 (DDBJ%2C Best hit);ORF_evidence=B7F5S7 (UniProt);NIAS_FLcDNA=J013106J20;TENOR=Os08t0233300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	8104943	8105875	.	+	.	Parent=Os08t0233300-01
Chr08	irgsp1_rep	five_prime_UTR	8105984	8106173	.	+	.	Parent=Os08t0233300-01
Chr08	irgsp1_rep	CDS	8106174	8106358	.	+	0	Parent=Os08t0233300-01
Chr08	irgsp1_rep	mRNA	8104969	8107543	.	+	.	ID=Os08t0233300-02;Name=Os08t0233300-02;Locus_id=Os08g0233300;Note=Similar to cDNA clone:J013001A08%2C full insert sequence.;Transcript_evidence=AK120342 (DDBJ%2C Best hit);ORF_evidence=B7EN35 (UniProt);NIAS_FLcDNA=J013061K19;TENOR=Os08t0233300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	8104969	8106894	.	+	.	Parent=Os08t0233300-02
Chr08	irgsp1_rep	CDS	8106895	8107161	.	+	0	Parent=Os08t0233300-02
Chr08	irgsp1_rep	three_prime_UTR	8107162	8107270	.	+	.	Parent=Os08t0233300-02
Chr08	irgsp1_rep	three_prime_UTR	8107352	8107543	.	+	.	Parent=Os08t0233300-02
Chr08	irgsp1_rep	mRNA	8107778	8116271	.	-	.	ID=Os08t0233400-01;Name=Os08t0233400-01;Locus_id=Os08g0233400;Note=Ankyrin repeat domain containing protein.;Transcript_evidence=AK242288 (DDBJ%2C Best hit);ORF_evidence=B9FZQ7 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J075190M07;TENOR=Os08t0233400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	8116099	8116271	.	-	.	Parent=Os08t0233400-01
Chr08	irgsp1_rep	five_prime_UTR	8115945	8116013	.	-	.	Parent=Os08t0233400-01
Chr08	irgsp1_rep	five_prime_UTR	8115672	8115845	.	-	.	Parent=Os08t0233400-01
Chr08	irgsp1_rep	five_prime_UTR	8114746	8114877	.	-	.	Parent=Os08t0233400-01
Chr08	irgsp1_rep	five_prime_UTR	8113813	8113955	.	-	.	Parent=Os08t0233400-01
Chr08	irgsp1_rep	five_prime_UTR	8112924	8112963	.	-	.	Parent=Os08t0233400-01
Chr08	irgsp1_rep	CDS	8112864	8112923	.	-	0	Parent=Os08t0233400-01
Chr08	irgsp1_rep	CDS	8112589	8112717	.	-	0	Parent=Os08t0233400-01
Chr08	irgsp1_rep	CDS	8110524	8110625	.	-	0	Parent=Os08t0233400-01
Chr08	irgsp1_rep	CDS	8109083	8109253	.	-	0	Parent=Os08t0233400-01
Chr08	irgsp1_rep	CDS	8108924	8109003	.	-	0	Parent=Os08t0233400-01
Chr08	irgsp1_rep	CDS	8108000	8108051	.	-	1	Parent=Os08t0233400-01
Chr08	irgsp1_rep	three_prime_UTR	8107778	8107999	.	-	.	Parent=Os08t0233400-01
Chr08	irgsp1_rep	mRNA	8118287	8120253	.	-	.	ID=Os08t0233600-01;Name=Os08t0233600-01;Locus_id=Os08g0233600;Note=Hypothetical conserved gene.;Transcript_evidence=AK100848 (DDBJ%2C Best hit);ORF_evidence=NP_001052159.1 (RefSeq);NIAS_FLcDNA=J023123H12;Expression=AK100848;TENOR=Os08t0233600-01;KEGG=Os08t0233600-01
Chr08	irgsp1_rep	five_prime_UTR	8119586	8120253	.	-	.	Parent=Os08t0233600-01
Chr08	irgsp1_rep	five_prime_UTR	8119368	8119485	.	-	.	Parent=Os08t0233600-01
Chr08	irgsp1_rep	five_prime_UTR	8118953	8119227	.	-	.	Parent=Os08t0233600-01
Chr08	irgsp1_rep	five_prime_UTR	8118720	8118789	.	-	.	Parent=Os08t0233600-01
Chr08	irgsp1_rep	CDS	8118691	8118719	.	-	0	Parent=Os08t0233600-01
Chr08	irgsp1_rep	CDS	8118470	8118566	.	-	1	Parent=Os08t0233600-01
Chr08	irgsp1_rep	three_prime_UTR	8118287	8118469	.	-	.	Parent=Os08t0233600-01
Chr08	irgsp1_rep	mRNA	8147380	8148509	.	-	.	ID=Os08t0233900-01;Name=Os08t0233900-01;Locus_id=Os08g0233900;Note=Conserved hypothetical protein.;Transcript_evidence=AK074006 (DDBJ%2C Best hit);ORF_evidence=Q7XMF4 (UniProt);NIAS_FLcDNA=J033077D15;Expression=AK074006;TENOR=Os08t0233900-01;KEGG=Os08t0233900-01
Chr08	irgsp1_rep	five_prime_UTR	8148378	8148509	.	-	.	Parent=Os08t0233900-01
Chr08	irgsp1_rep	five_prime_UTR	8148024	8148035	.	-	.	Parent=Os08t0233900-01
Chr08	irgsp1_rep	CDS	8147529	8148023	.	-	0	Parent=Os08t0233900-01
Chr08	irgsp1_rep	three_prime_UTR	8147380	8147528	.	-	.	Parent=Os08t0233900-01
Chr08	irgsp1_rep	mRNA	8153389	8155815	.	+	.	ID=Os08t0234000-01;Name=Os08t0234000-01;Locus_id=Os08g0234000;Note=Similar to 60S ribosomal protein L7-2.;Transcript_evidence=AK102873 (DDBJ%2C Best hit);ORF_evidence=NP_001148360.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L7%2C eukaryotic (IPR005998),Ribosomal protein L30%2C N-terminal (IPR012988),Ribosomal protein L30%2C ferredoxin-like fold domain (IPR016082),Ribosomal protein L30%2C conserved site (IPR018038);NIAS_FLcDNA=J033112B19;Expression=AK102873;TENOR=Os08t0234000-01;KEGG=Os08t0234000-01
Chr08	irgsp1_rep	five_prime_UTR	8153389	8153442	.	+	.	Parent=Os08t0234000-01
Chr08	irgsp1_rep	CDS	8153520	8153702	.	+	0	Parent=Os08t0234000-01
Chr08	irgsp1_rep	CDS	8154214	8154311	.	+	0	Parent=Os08t0234000-01
Chr08	irgsp1_rep	CDS	8154388	8154445	.	+	1	Parent=Os08t0234000-01
Chr08	irgsp1_rep	CDS	8154535	8154614	.	+	0	Parent=Os08t0234000-01
Chr08	irgsp1_rep	CDS	8155113	8155215	.	+	1	Parent=Os08t0234000-01
Chr08	irgsp1_rep	CDS	8155309	8155524	.	+	0	Parent=Os08t0234000-01
Chr08	irgsp1_rep	three_prime_UTR	8155525	8155815	.	+	.	Parent=Os08t0234000-01
Chr08	irgsp1_rep	mRNA	8154580	8155764	.	+	.	ID=Os08t0234000-02;Name=Os08t0234000-02;Locus_id=Os08g0234000;Note=Similar to 60S ribosomal protein L7-2.;Transcript_evidence=AK061680 (DDBJ%2C Best hit);ORF_evidence=NP_001148262.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L30%2C ferredoxin-like fold domain (IPR016082);NIAS_FLcDNA=001-037-A02;Expression=AK061680;TENOR=Os08t0234000-02;KEGG=Os08t0234000-02
Chr08	irgsp1_rep	CDS	8154580	8154614	.	+	0	Parent=Os08t0234000-02
Chr08	irgsp1_rep	CDS	8155113	8155215	.	+	1	Parent=Os08t0234000-02
Chr08	irgsp1_rep	CDS	8155309	8155524	.	+	0	Parent=Os08t0234000-02
Chr08	irgsp1_rep	three_prime_UTR	8155525	8155764	.	+	.	Parent=Os08t0234000-02
Chr08	irgsp1_rep	mRNA	8154564	8155536	.	-	.	ID=Os08t0234050-00;Name=Os08t0234050-00;Locus_id=Os08g0234050;Note=Conserved hypothetical protein.;Transcript_evidence=AM939971 (DDBJ);ORF_evidence=B7ZZP0 (UniProt);TENOR=Os08t0234050-00
Chr08	irgsp1_rep	CDS	8155327	8155536	.	-	0	Parent=Os08t0234050-00
Chr08	irgsp1_rep	CDS	8155205	8155234	.	-	0	Parent=Os08t0234050-00
Chr08	irgsp1_rep	three_prime_UTR	8155112	8155204	.	-	.	Parent=Os08t0234050-00
Chr08	irgsp1_rep	three_prime_UTR	8154564	8154613	.	-	.	Parent=Os08t0234050-00
Chr08	irgsp1_rep	mRNA	8156590	8158428	.	-	.	ID=Os08t0234100-01;Name=Os08t0234100-01;Locus_id=Os08g0234100;Note=Conserved hypothetical protein.;Transcript_evidence=AK106626 (DDBJ%2C Best hit);ORF_evidence=A2YSP2 (UniProt);NIAS_FLcDNA=002-113-C08;TENOR=Os08t0234100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	8157292	8158428	.	-	.	Parent=Os08t0234100-01
Chr08	irgsp1_rep	five_prime_UTR	8156900	8157211	.	-	.	Parent=Os08t0234100-01
Chr08	irgsp1_rep	CDS	8156696	8156899	.	-	0	Parent=Os08t0234100-01
Chr08	irgsp1_rep	three_prime_UTR	8156590	8156695	.	-	.	Parent=Os08t0234100-01
Chr08	irgsp1_rep	mRNA	8159973	8162772	.	-	.	ID=Os08t0234200-01;Name=Os08t0234200-01;Locus_id=Os08g0234200;Note=Conserved hypothetical protein.;Transcript_evidence=AK121666 (DDBJ%2C Best hit);ORF_evidence=Q6YYR1 (UniProt);NIAS_FLcDNA=J033066I03;TENOR=Os08t0234200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	8162748	8162772	.	-	.	Parent=Os08t0234200-01
Chr08	irgsp1_rep	CDS	8162553	8162747	.	-	0	Parent=Os08t0234200-01
Chr08	irgsp1_rep	CDS	8160210	8160302	.	-	0	Parent=Os08t0234200-01
Chr08	irgsp1_rep	three_prime_UTR	8159973	8160209	.	-	.	Parent=Os08t0234200-01
Chr08	irgsp1_rep	mRNA	8165310	8168702	.	-	.	ID=Os08t0234400-01;Name=Os08t0234400-01;Locus_id=Os08g0234400;Note=Hypothetical gene.;Transcript_evidence=AK241612 (DDBJ%2C Best hit);ORF_evidence=NP_001175451.1 (RefSeq);NIAS_FLcDNA=J065186B17;TENOR=Os08t0234400-01;KEGG=Os08t0234400-01
Chr08	irgsp1_rep	five_prime_UTR	8168451	8168702	.	-	.	Parent=Os08t0234400-01
Chr08	irgsp1_rep	CDS	8168304	8168450	.	-	0	Parent=Os08t0234400-01
Chr08	irgsp1_rep	CDS	8168055	8168109	.	-	0	Parent=Os08t0234400-01
Chr08	irgsp1_rep	CDS	8167546	8167601	.	-	2	Parent=Os08t0234400-01
Chr08	irgsp1_rep	three_prime_UTR	8167327	8167545	.	-	.	Parent=Os08t0234400-01
Chr08	irgsp1_rep	three_prime_UTR	8165310	8165450	.	-	.	Parent=Os08t0234400-01
Chr08	irgsp1_rep	mRNA	8175612	8177396	.	-	.	ID=Os08t0234700-01;Name=Os08t0234700-01;Locus_id=Os08g0234700;Note=Conserved hypothetical protein.;Transcript_evidence=AK106899 (DDBJ%2C Best hit);ORF_evidence=NP_001175456.1 (RefSeq);NIAS_FLcDNA=002-118-H06;TENOR=Os08t0234700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	8177057	8177396	.	-	.	Parent=Os08t0234700-01
Chr08	irgsp1_rep	CDS	8176925	8177056	.	-	0	Parent=Os08t0234700-01
Chr08	irgsp1_rep	three_prime_UTR	8175612	8176924	.	-	.	Parent=Os08t0234700-01
Chr08	irgsp1_rep	mRNA	8207064	8207447	.	+	.	ID=Os08t0235183-00;Name=Os08t0235183-00;Locus_id=Os08g0235183;Note=Similar to Thaumatin-like protein.;Transcript_evidence=BT039682 (DDBJ);ORF_evidence=B6U579 (UniProt);InterPro=Thaumatin%2C pathogenesis-related (IPR001938);TENOR=Os08t0235183-00
Chr08	irgsp1_rep	five_prime_UTR	8207064	8207096	.	+	.	Parent=Os08t0235183-00
Chr08	irgsp1_rep	CDS	8207097	8207447	.	+	0	Parent=Os08t0235183-00
Chr08	irgsp1_rep	mRNA	8216495	8219321	.	+	.	ID=Os08t0235400-01;Name=Os08t0235400-01;Locus_id=Os08g0235400;Oryzabase Gene Symbol Synonym(s)=OsPUB69;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 69%2C U-box protein 69;Note=Conserved hypothetical protein.;Transcript_evidence=AK287781 (DDBJ%2C Best hit);ORF_evidence=B9FZR4 (UniProt);NIAS_FLcDNA=J065171K13;Oryzabase=17860;TENOR=Os08t0235400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	8216495	8216718	.	+	.	Parent=Os08t0235400-01
Chr08	irgsp1_rep	CDS	8216719	8216925	.	+	0	Parent=Os08t0235400-01
Chr08	irgsp1_rep	CDS	8217585	8217683	.	+	0	Parent=Os08t0235400-01
Chr08	irgsp1_rep	three_prime_UTR	8217684	8218288	.	+	.	Parent=Os08t0235400-01
Chr08	irgsp1_rep	three_prime_UTR	8218370	8218429	.	+	.	Parent=Os08t0235400-01
Chr08	irgsp1_rep	three_prime_UTR	8218507	8218770	.	+	.	Parent=Os08t0235400-01
Chr08	irgsp1_rep	three_prime_UTR	8218865	8219321	.	+	.	Parent=Os08t0235400-01
Chr08	irgsp1_rep	mRNA	8224155	8224982	.	-	.	ID=Os08t0235550-01;Name=Os08t0235550-01;Locus_id=Os08g0235550;Note=Conserved hypothetical protein.;Transcript_evidence=AK288140 (DDBJ%2C Best hit);ORF_evidence=NP_001051410.1 (RefSeq);NIAS_FLcDNA=J080307P05;TENOR=Os08t0235550-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	8224694	8224982	.	-	.	Parent=Os08t0235550-01
Chr08	irgsp1_rep	CDS	8224403	8224693	.	-	0	Parent=Os08t0235550-01
Chr08	irgsp1_rep	three_prime_UTR	8224155	8224402	.	-	.	Parent=Os08t0235550-01
Chr08	irgsp1_rep	mRNA	8230111	8235214	.	+	.	ID=Os08t0235600-00;Name=Os08t0235600-00;Locus_id=Os08g0235600;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A2YSP8 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os08t0235600-00;KEGG=Os08t0235600-00
Chr08	irgsp1_rep	CDS	8230111	8230214	.	+	0	Parent=Os08t0235600-00
Chr08	irgsp1_rep	CDS	8234092	8235214	.	+	1	Parent=Os08t0235600-00
Chr08	irgsp1_rep	mRNA	8229426	8237973	.	-	.	ID=Os08t0235650-00;Name=Os08t0235650-00;Locus_id=Os08g0235650;Note=Hypothetical conserved gene.;Transcript_evidence=CT835971 (DDBJ%2C Best hit);ORF_evidence=B8BC70 (UniProt);TENOR=Os08t0235650-00;KEGG=Os08t0235650-00
Chr08	irgsp1_rep	five_prime_UTR	8237698	8237973	.	-	.	Parent=Os08t0235650-00
Chr08	irgsp1_rep	CDS	8237647	8237697	.	-	0	Parent=Os08t0235650-00
Chr08	irgsp1_rep	CDS	8230101	8230319	.	-	0	Parent=Os08t0235650-00
Chr08	irgsp1_rep	three_prime_UTR	8229426	8230100	.	-	.	Parent=Os08t0235650-00
Chr08	irgsp1_rep	mRNA	8235249	8236739	.	+	.	ID=Os08t0235651-00;Name=Os08t0235651-00;Locus_id=Os08g0235651;Note=NB-ARC domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001061314.2 (RefSeq);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os08t0235651-00
Chr08	irgsp1_rep	CDS	8235249	8236739	.	+	0	Parent=Os08t0235651-00
Chr08	irgsp1_rep	mRNA	8258523	8259611	.	-	.	ID=Os08t0235800-00;Name=Os08t0235800-00;Locus_id=Os08g0235800;CGSNL Gene Symbol=WRKY25;CGSNL Gene Name=WRKY GENE 25;Oryzabase Gene Symbol Synonym(s)=OsWRKY25%2C OsWRKY44%2C WRKY44;Oryzabase Gene Name Synonym(s)=WRKY GENE 44.;Note=Similar to WRKY transcription factor 25.;Transcript_evidence=CT841936 (DDBJ%2C Best hit);ORF_evidence=Q6IEQ6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657),Zn-cluster domain (IPR018872);Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6537;TENOR=Os08t0235800-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	8259610	8259611	.	-	.	Parent=Os08t0235800-00
Chr08	irgsp1_rep	CDS	8258575	8259609	.	-	0	Parent=Os08t0235800-00
Chr08	irgsp1_rep	three_prime_UTR	8258523	8258574	.	-	.	Parent=Os08t0235800-00
Chr08	irgsp1_rep	mRNA	8283843	8285334	.	-	.	ID=Os08t0236400-00;Name=Os08t0236400-00;Locus_id=Os08g0236400;CGSNL Gene Symbol=RLCK248;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 248;Oryzabase Gene Symbol Synonym(s)=OsRLCK248;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 248;Note=Epidermal growth factor-like%2C type 3 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6Z9B2 (UniProt);GO=Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein binding (GO:0005515),Molecular Function: sugar binding (GO:0005529);InterPro=Epidermal growth factor-like%2C type 3 (IPR000742),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480);Oryzabase=18939;TENOR=Os08t0236400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	8283926	8285334	.	-	0	Parent=Os08t0236400-00
Chr08	irgsp1_rep	CDS	8283843	8283879	.	-	1	Parent=Os08t0236400-00
Chr08	irgsp1_rep	mRNA	8298118	8299493	.	+	.	ID=Os08t0236700-00;Name=Os08t0236700-00;Locus_id=Os08g0236700;Note=Similar to Exonuclease.;Transcript_evidence=AK252701 (DDBJ);ORF_evidence=B6TZ94 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: nuclease activity (GO:0004518);InterPro=Restriction endonuclease%2C type II-like (IPR011335),Exonuclease%2C phage-type/RecB%2C C-terminal (IPR011604),Putative phage-type endonuclease (IPR017482),YqaJ viral recombinase family (IPR019080);TENOR=Os08t0236700-00;KEGG=Os08t0236700-00
Chr08	irgsp1_rep	CDS	8298118	8298392	.	+	0	Parent=Os08t0236700-00
Chr08	irgsp1_rep	CDS	8298482	8299427	.	+	1	Parent=Os08t0236700-00
Chr08	irgsp1_rep	three_prime_UTR	8299428	8299493	.	+	.	Parent=Os08t0236700-00
Chr08	irgsp1_rep	mRNA	8300327	8302290	.	-	.	ID=Os08t0236800-01;Name=Os08t0236800-01;Locus_id=Os08g0236800;Note=Conserved hypothetical protein.;Transcript_evidence=AK067773 (DDBJ%2C Best hit);ORF_evidence=NP_001053135.1 (RefSeq);NIAS_FLcDNA=J013118K04;Expression=AK067773;TENOR=Os08t0236800-01;KEGG=Os08t0236800-01
Chr08	irgsp1_rep	five_prime_UTR	8302007	8302290	.	-	.	Parent=Os08t0236800-01
Chr08	irgsp1_rep	CDS	8302004	8302006	.	-	0	Parent=Os08t0236800-01
Chr08	irgsp1_rep	CDS	8300959	8301171	.	-	0	Parent=Os08t0236800-01
Chr08	irgsp1_rep	three_prime_UTR	8300327	8300958	.	-	.	Parent=Os08t0236800-01
Chr08	irgsp1_rep	mRNA	8303870	8307351	.	+	.	ID=Os08t0236866-01;Name=Os08t0236866-01;Locus_id=Os08g0236866;Note=Hypothetical conserved gene.;Transcript_evidence=AK241108 (DDBJ%2C Best hit);ORF_evidence=B9FZR8 (UniProt);NIAS_FLcDNA=J065090B13;TENOR=Os08t0236866-01;KEGG=Os08t0236866-01
Chr08	irgsp1_rep	five_prime_UTR	8303870	8303876	.	+	.	Parent=Os08t0236866-01
Chr08	irgsp1_rep	CDS	8303877	8304060	.	+	0	Parent=Os08t0236866-01
Chr08	irgsp1_rep	CDS	8304181	8304353	.	+	2	Parent=Os08t0236866-01
Chr08	irgsp1_rep	CDS	8304894	8305043	.	+	0	Parent=Os08t0236866-01
Chr08	irgsp1_rep	three_prime_UTR	8305044	8305230	.	+	.	Parent=Os08t0236866-01
Chr08	irgsp1_rep	three_prime_UTR	8305317	8305433	.	+	.	Parent=Os08t0236866-01
Chr08	irgsp1_rep	three_prime_UTR	8305736	8305806	.	+	.	Parent=Os08t0236866-01
Chr08	irgsp1_rep	three_prime_UTR	8306496	8307351	.	+	.	Parent=Os08t0236866-01
Chr08	irgsp1_rep	mRNA	8307815	8311773	.	+	.	ID=Os08t0236900-01;Name=Os08t0236900-01;Locus_id=Os08g0236900;Note=Conserved hypothetical protein.;Transcript_evidence=AK109597 (DDBJ%2C Best hit);ORF_evidence=B9FZR9 (UniProt);NIAS_FLcDNA=002-137-D08;TENOR=Os08t0236900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	8307815	8308011	.	+	.	Parent=Os08t0236900-01
Chr08	irgsp1_rep	five_prime_UTR	8308653	8308841	.	+	.	Parent=Os08t0236900-01
Chr08	irgsp1_rep	five_prime_UTR	8308956	8309580	.	+	.	Parent=Os08t0236900-01
Chr08	irgsp1_rep	five_prime_UTR	8310711	8310970	.	+	.	Parent=Os08t0236900-01
Chr08	irgsp1_rep	CDS	8310971	8310984	.	+	0	Parent=Os08t0236900-01
Chr08	irgsp1_rep	CDS	8311226	8311538	.	+	1	Parent=Os08t0236900-01
Chr08	irgsp1_rep	three_prime_UTR	8311539	8311773	.	+	.	Parent=Os08t0236900-01
Chr08	irgsp1_rep	mRNA	8328017	8329241	.	+	.	ID=Os08t0237000-01;Name=Os08t0237000-01;Locus_id=Os08g0237000;CGSNL Gene Symbol=XTH17;CGSNL Gene Name=XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 17;Oryzabase Gene Symbol Synonym(s)=OsXTH17%2C OsXTH8;Oryzabase Gene Name Synonym(s)=xyloglucan endotransglucosylase/hydrolase%2C xyloglucan endotransglucosylase 17;Note=Xyloglucan endotransglycosylase/hydrolase protein 8 precursor (EC 2.4.1.207) (End-xyloglucan transferase) (OsXTH8) (OsXRT5).;Transcript_evidence=AK060654 (DDBJ%2C Best hit),AK104451 (DDBJ%2C Best hit);ORF_evidence=Q76BW5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: cellular glucan metabolic process (GO:0006073),Cellular Component: cell wall (GO:0005618),Cellular Component: apoplast (GO:0048046),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762);InterPro=Glycoside hydrolase%2C family 16 (IPR000757),Glycoside hydrolase%2C family 16%2C active site (IPR008263),Beta-glucanase (IPR008264),Concanavalin A-like lectin/glucanase (IPR008985),Xyloglucan endo-transglycosylase%2C C-terminal (IPR010713),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Xyloglucan endotransglucosylase/hydrolase (IPR016455);NIAS_FLcDNA=001-027-H12,006-212-F05;Oryzabase=6497;TENOR=Os08t0237000-01
Chr08	irgsp1_rep	five_prime_UTR	8328017	8328059	.	+	.	Parent=Os08t0237000-01
Chr08	irgsp1_rep	CDS	8328060	8328541	.	+	0	Parent=Os08t0237000-01
Chr08	irgsp1_rep	CDS	8328640	8329030	.	+	1	Parent=Os08t0237000-01
Chr08	irgsp1_rep	three_prime_UTR	8329031	8329241	.	+	.	Parent=Os08t0237000-01
Chr08	irgsp1_rep	mRNA	8335699	8339610	.	-	.	ID=Os08t0237100-01;Name=Os08t0237100-01;Locus_id=Os08g0237100;Note=Conserved hypothetical protein.;Transcript_evidence=AK109366 (DDBJ%2C Best hit);ORF_evidence=NP_001175128.1 (RefSeq);NIAS_FLcDNA=006-206-H09;TENOR=Os08t0237100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	8339388	8339610	.	-	.	Parent=Os08t0237100-01
Chr08	irgsp1_rep	CDS	8339154	8339387	.	-	0	Parent=Os08t0237100-01
Chr08	irgsp1_rep	three_prime_UTR	8339046	8339153	.	-	.	Parent=Os08t0237100-01
Chr08	irgsp1_rep	three_prime_UTR	8338614	8338733	.	-	.	Parent=Os08t0237100-01
Chr08	irgsp1_rep	three_prime_UTR	8338400	8338470	.	-	.	Parent=Os08t0237100-01
Chr08	irgsp1_rep	three_prime_UTR	8338128	8338233	.	-	.	Parent=Os08t0237100-01
Chr08	irgsp1_rep	three_prime_UTR	8336827	8336929	.	-	.	Parent=Os08t0237100-01
Chr08	irgsp1_rep	three_prime_UTR	8336661	8336716	.	-	.	Parent=Os08t0237100-01
Chr08	irgsp1_rep	three_prime_UTR	8335699	8336027	.	-	.	Parent=Os08t0237100-01
Chr08	irgsp1_rep	mRNA	8342253	8346555	.	-	.	ID=Os08t0237200-01;Name=Os08t0237200-01;Locus_id=Os08g0237200;Oryzabase Gene Symbol Synonym(s)=OsMPG4%2C MPG4%2C OsVTC1-8%2C VTC1-8;Oryzabase Gene Name Synonym(s)=mannose-1-phosphate guanyl transferase 4;Note=Mannose-1-phosphate guanyltransferase (EC 2.7.7.13) (ATP-mannose-1- phosphate guanylyltransferase) (GDP-mannose pyrophosphorylase) (NDP- hexose pyrophosphorylase).;Transcript_evidence=AK243016 (DDBJ%2C Best hit);ORF_evidence=A0EJL9 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: transferase activity (GO:0016740),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=Bacterial transferase hexapeptide repeat (IPR001451),Nucleotidyl transferase (IPR005835),Hexapeptide transferase%2C conserved site (IPR018357);NIAS_FLcDNA=J090098K14;Oryzabase=11518;TENOR=Os08t0237200-01;KEGG=Os08t0237200-01 (EC:2.7.7.13)
Chr08	irgsp1_rep	five_prime_UTR	8346228	8346555	.	-	.	Parent=Os08t0237200-01
Chr08	irgsp1_rep	five_prime_UTR	8344938	8345101	.	-	.	Parent=Os08t0237200-01
Chr08	irgsp1_rep	five_prime_UTR	8344140	8344218	.	-	.	Parent=Os08t0237200-01
Chr08	irgsp1_rep	CDS	8344029	8344139	.	-	0	Parent=Os08t0237200-01
Chr08	irgsp1_rep	CDS	8343486	8343548	.	-	0	Parent=Os08t0237200-01
Chr08	irgsp1_rep	CDS	8343155	8343394	.	-	0	Parent=Os08t0237200-01
Chr08	irgsp1_rep	CDS	8342408	8343079	.	-	0	Parent=Os08t0237200-01
Chr08	irgsp1_rep	three_prime_UTR	8342253	8342407	.	-	.	Parent=Os08t0237200-01
Chr08	irgsp1_rep	mRNA	8342408	8344154	.	+	.	ID=Os08t0237500-00;Name=Os08t0237500-00;Locus_id=Os08g0237500;Note=Non-protein coding transcript.;Transcript_evidence=tplb0049h19 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os08t0237500-00
Chr08	irgsp1_rep	exon	8342408	8343073	.	+	.	Parent=Os08t0237500-00
Chr08	irgsp1_rep	exon	8343148	8343396	.	+	.	Parent=Os08t0237500-00
Chr08	irgsp1_rep	exon	8343489	8343548	.	+	.	Parent=Os08t0237500-00
Chr08	irgsp1_rep	exon	8344029	8344154	.	+	.	Parent=Os08t0237500-00
Chr08	irgsp1_rep	mRNA	8384563	8385805	.	-	.	ID=Os08t0237800-00;Name=Os08t0237800-00;Locus_id=Os08g0237800;CGSNL Gene Symbol=XTH8;CGSNL Gene Name=XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 8;Oryzabase Gene Symbol Synonym(s)=OsXTH8%2C OsSTA207;Oryzabase Gene Name Synonym(s)=Xyloglucan endotransglycosylase/hydrolase%2C xyloglucan endotransglucosylase 8;Note=Similar to Xyloglucan endotransglycosylase (Fragment).;Transcript_evidence=AK355309 (DDBJ);ORF_evidence=Q01KK0 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: cellular glucan metabolic process (GO:0006073),Cellular Component: cell wall (GO:0005618),Cellular Component: apoplast (GO:0048046),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762);InterPro=Glycoside hydrolase%2C family 16 (IPR000757),Glycoside hydrolase%2C family 16%2C active site (IPR008263),Beta-glucanase (IPR008264),Concanavalin A-like lectin/glucanase (IPR008985),Xyloglucan endo-transglycosylase%2C C-terminal (IPR010713),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Xyloglucan endotransglucosylase/hydrolase (IPR016455);Oryzabase=6516;TENOR=Os08t0237800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	8385485	8385805	.	-	0	Parent=Os08t0237800-00
Chr08	irgsp1_rep	CDS	8385171	8385373	.	-	0	Parent=Os08t0237800-00
Chr08	irgsp1_rep	CDS	8384570	8384957	.	-	1	Parent=Os08t0237800-00
Chr08	irgsp1_rep	three_prime_UTR	8384563	8384569	.	-	.	Parent=Os08t0237800-00
Chr08	irgsp1_rep	mRNA	8390973	8392828	.	+	.	ID=Os08t0238100-00;Name=Os08t0238100-00;Locus_id=Os08g0238100;Note=Similar to Pentatricopeptide repeat protein PPR986-12.;Transcript_evidence=EU957507 (DDBJ);ORF_evidence=B6SXP2 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);TENOR=Os08t0238100-00;KEGG=Os08t0238100-00
Chr08	irgsp1_rep	CDS	8390973	8392763	.	+	0	Parent=Os08t0238100-00
Chr08	irgsp1_rep	three_prime_UTR	8392764	8392828	.	+	.	Parent=Os08t0238100-00
Chr08	irgsp1_rep	mRNA	8394276	8397823	.	+	.	ID=Os08t0238200-01;Name=Os08t0238200-01;Locus_id=Os08g0238200;Note=Dienelactone hydrolase domain containing protein.;Transcript_evidence=AK067264 (DDBJ%2C Best hit);ORF_evidence=B6TMW5 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Dienelactone hydrolase (IPR002925);NIAS_FLcDNA=J013096H10;Expression=AK067264;TENOR=Os08t0238200-01;KEGG=Os08t0238200-01
Chr08	irgsp1_rep	five_prime_UTR	8394276	8394299	.	+	.	Parent=Os08t0238200-01
Chr08	irgsp1_rep	CDS	8394300	8394561	.	+	0	Parent=Os08t0238200-01
Chr08	irgsp1_rep	CDS	8394680	8394701	.	+	2	Parent=Os08t0238200-01
Chr08	irgsp1_rep	CDS	8396397	8396520	.	+	1	Parent=Os08t0238200-01
Chr08	irgsp1_rep	CDS	8396611	8396701	.	+	0	Parent=Os08t0238200-01
Chr08	irgsp1_rep	CDS	8396864	8396953	.	+	2	Parent=Os08t0238200-01
Chr08	irgsp1_rep	CDS	8397077	8397177	.	+	2	Parent=Os08t0238200-01
Chr08	irgsp1_rep	CDS	8397478	8397618	.	+	0	Parent=Os08t0238200-01
Chr08	irgsp1_rep	three_prime_UTR	8397619	8397823	.	+	.	Parent=Os08t0238200-01
Chr08	irgsp1_rep	mRNA	8394312	8397823	.	+	.	ID=Os08t0238200-02;Name=Os08t0238200-02;Locus_id=Os08g0238200;Note=Similar to Retrotransposon protein Ty1-copia subclass.;Transcript_evidence=AK104922 (DDBJ%2C Best hit);ORF_evidence=B6TMW5 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Dienelactone hydrolase (IPR002925);NIAS_FLcDNA=001-102-D02;Expression=AK104922;TENOR=Os08t0238200-02;KEGG=Os08t0238200-02
Chr08	irgsp1_rep	CDS	8394312	8394561	.	+	0	Parent=Os08t0238200-02
Chr08	irgsp1_rep	CDS	8394680	8394701	.	+	2	Parent=Os08t0238200-02
Chr08	irgsp1_rep	CDS	8396397	8396520	.	+	1	Parent=Os08t0238200-02
Chr08	irgsp1_rep	CDS	8396611	8396701	.	+	0	Parent=Os08t0238200-02
Chr08	irgsp1_rep	CDS	8396864	8396953	.	+	2	Parent=Os08t0238200-02
Chr08	irgsp1_rep	CDS	8397077	8397177	.	+	2	Parent=Os08t0238200-02
Chr08	irgsp1_rep	CDS	8397478	8397618	.	+	0	Parent=Os08t0238200-02
Chr08	irgsp1_rep	three_prime_UTR	8397619	8397823	.	+	.	Parent=Os08t0238200-02
Chr08	irgsp1_rep	mRNA	8405972	8410112	.	-	.	ID=Os08t0238351-01;Name=Os08t0238351-01;Locus_id=Os08g0238351;Note=Non-protein coding transcript.;Transcript_evidence=AK287871 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065204G12;TENOR=Os08t0238351-01
Chr08	irgsp1_rep	exon	8409086	8410112	.	-	.	Parent=Os08t0238351-01
Chr08	irgsp1_rep	exon	8408868	8408957	.	-	.	Parent=Os08t0238351-01
Chr08	irgsp1_rep	exon	8408621	8408711	.	-	.	Parent=Os08t0238351-01
Chr08	irgsp1_rep	exon	8408154	8408277	.	-	.	Parent=Os08t0238351-01
Chr08	irgsp1_rep	exon	8405972	8406235	.	-	.	Parent=Os08t0238351-01
Chr08	irgsp1_rep	mRNA	8406018	8410016	.	+	.	ID=Os08t0238500-00;Name=Os08t0238500-00;Locus_id=Os08g0238500;Note=Similar to Dienelactone hydrolase family.;Transcript_evidence=CT837795 (DDBJ%2C Secondary hit);ORF_evidence=Q53Q95 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Dienelactone hydrolase (IPR002925);TENOR=Os08t0238500-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	8406018	8406154	.	+	.	Parent=Os08t0238500-00
Chr08	irgsp1_rep	CDS	8406155	8406235	.	+	0	Parent=Os08t0238500-00
Chr08	irgsp1_rep	CDS	8408621	8408711	.	+	0	Parent=Os08t0238500-00
Chr08	irgsp1_rep	CDS	8408868	8408957	.	+	2	Parent=Os08t0238500-00
Chr08	irgsp1_rep	CDS	8409086	8409186	.	+	2	Parent=Os08t0238500-00
Chr08	irgsp1_rep	CDS	8409682	8409822	.	+	0	Parent=Os08t0238500-00
Chr08	irgsp1_rep	three_prime_UTR	8409823	8410016	.	+	.	Parent=Os08t0238500-00
Chr08	irgsp1_rep	mRNA	8412054	8420579	.	+	.	ID=Os08t0238600-01;Name=Os08t0238600-01;Locus_id=Os08g0238600;Note=Similar to Dienelactone hydrolase family.;Transcript_evidence=AK059758 (DDBJ%2C Best hit);ORF_evidence=Q53Q95 (UniProt);NIAS_FLcDNA=006-203-E06;TENOR=Os08t0238600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	8412054	8412221	.	+	0	Parent=Os08t0238600-01
Chr08	irgsp1_rep	CDS	8412264	8412306	.	+	0	Parent=Os08t0238600-01
Chr08	irgsp1_rep	CDS	8412474	8412495	.	+	2	Parent=Os08t0238600-01
Chr08	irgsp1_rep	CDS	8414574	8414610	.	+	1	Parent=Os08t0238600-01
Chr08	irgsp1_rep	three_prime_UTR	8414611	8414695	.	+	.	Parent=Os08t0238600-01
Chr08	irgsp1_rep	three_prime_UTR	8419262	8419352	.	+	.	Parent=Os08t0238600-01
Chr08	irgsp1_rep	three_prime_UTR	8419539	8419628	.	+	.	Parent=Os08t0238600-01
Chr08	irgsp1_rep	three_prime_UTR	8419720	8419820	.	+	.	Parent=Os08t0238600-01
Chr08	irgsp1_rep	three_prime_UTR	8420237	8420579	.	+	.	Parent=Os08t0238600-01
Chr08	irgsp1_rep	mRNA	8415405	8417869	.	-	.	ID=Os08t0238700-01;Name=Os08t0238700-01;Locus_id=Os08g0238700;Note=Conserved hypothetical protein.;Transcript_evidence=AK243341 (DDBJ%2C Best hit);ORF_evidence=Q2QRT3 (UniProt);NIAS_FLcDNA=J100059K13;TENOR=Os08t0238700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	8417500	8417869	.	-	.	Parent=Os08t0238700-01
Chr08	irgsp1_rep	five_prime_UTR	8417315	8417389	.	-	.	Parent=Os08t0238700-01
Chr08	irgsp1_rep	five_prime_UTR	8416893	8416989	.	-	.	Parent=Os08t0238700-01
Chr08	irgsp1_rep	CDS	8416837	8416892	.	-	0	Parent=Os08t0238700-01
Chr08	irgsp1_rep	CDS	8416646	8416745	.	-	1	Parent=Os08t0238700-01
Chr08	irgsp1_rep	CDS	8416489	8416548	.	-	0	Parent=Os08t0238700-01
Chr08	irgsp1_rep	three_prime_UTR	8416479	8416488	.	-	.	Parent=Os08t0238700-01
Chr08	irgsp1_rep	three_prime_UTR	8416252	8416327	.	-	.	Parent=Os08t0238700-01
Chr08	irgsp1_rep	three_prime_UTR	8415405	8415779	.	-	.	Parent=Os08t0238700-01
Chr08	irgsp1_rep	mRNA	8424284	8425290	.	+	.	ID=Os08t0239000-01;Name=Os08t0239000-01;Locus_id=Os08g0239000;Note=Complex 1 LYR protein family protein.;Transcript_evidence=AK062875 (DDBJ%2C Best hit);ORF_evidence=NP_001147354.1 (RefSeq);InterPro=Complex 1 LYR protein (IPR008011);NIAS_FLcDNA=001-108-C11;Expression=AK062875;TENOR=Os08t0239000-01;KEGG=Os08t0239000-01
Chr08	irgsp1_rep	five_prime_UTR	8424284	8424442	.	+	.	Parent=Os08t0239000-01
Chr08	irgsp1_rep	CDS	8424443	8424715	.	+	0	Parent=Os08t0239000-01
Chr08	irgsp1_rep	three_prime_UTR	8424716	8425290	.	+	.	Parent=Os08t0239000-01
Chr08	irgsp1_rep	mRNA	8437323	8445916	.	+	.	ID=Os08t0239300-01;Name=Os08t0239300-01;Locus_id=Os08g0239300;Note=Dienelactone hydrolase domain containing protein.;Transcript_evidence=AK059753 (DDBJ%2C Best hit);ORF_evidence=B6TMW5 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Dienelactone hydrolase (IPR002925);NIAS_FLcDNA=006-203-B07;Expression=AK059753;TENOR=Os08t0239300-01;KEGG=Os08t0239300-01
Chr08	irgsp1_rep	five_prime_UTR	8437323	8437369	.	+	.	Parent=Os08t0239300-01
Chr08	irgsp1_rep	CDS	8437370	8437595	.	+	0	Parent=Os08t0239300-01
Chr08	irgsp1_rep	CDS	8437755	8437776	.	+	2	Parent=Os08t0239300-01
Chr08	irgsp1_rep	CDS	8443563	8443680	.	+	1	Parent=Os08t0239300-01
Chr08	irgsp1_rep	CDS	8443992	8444082	.	+	0	Parent=Os08t0239300-01
Chr08	irgsp1_rep	CDS	8444256	8444345	.	+	2	Parent=Os08t0239300-01
Chr08	irgsp1_rep	CDS	8444442	8444545	.	+	2	Parent=Os08t0239300-01
Chr08	irgsp1_rep	CDS	8445480	8445620	.	+	0	Parent=Os08t0239300-01
Chr08	irgsp1_rep	three_prime_UTR	8445621	8445916	.	+	.	Parent=Os08t0239300-01
Chr08	irgsp1_rep	mRNA	8464913	8469555	.	+	.	ID=Os08t0239900-00;Name=Os08t0239900-00;Locus_id=Os08g0239900;Note=Similar to Flavonol 4-sulfotransferase.;Transcript_evidence=tplb0029j16 (Wheat FLcDNA);ORF_evidence=B6STJ6 (UniProt);GO=Molecular Function: sulfotransferase activity (GO:0008146);InterPro=Sulfotransferase domain (IPR000863);TENOR=Os08t0239900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	8464913	8465511	.	+	0	Parent=Os08t0239900-00
Chr08	irgsp1_rep	CDS	8469027	8469510	.	+	1	Parent=Os08t0239900-00
Chr08	irgsp1_rep	three_prime_UTR	8469511	8469555	.	+	.	Parent=Os08t0239900-00
Chr08	irgsp1_rep	mRNA	8472521	8475589	.	-	.	ID=Os08t0240000-02;Name=Os08t0240000-02;Locus_id=Os08g0240000;Note=Similar to STF-1 (Fragment).;Transcript_evidence=AK061204 (DDBJ%2C Best hit),AK099021 (DDBJ%2C Best hit);ORF_evidence=B6STJ6 (UniProt);NIAS_FLcDNA=006-210-B05,J013124F24;Expression=AK061204;TENOR=Os08t0240000-02;KEGG=Os08t0240000-02
Chr08	irgsp1_rep	CDS	8475039	8475589	.	-	0	Parent=Os08t0240000-02
Chr08	irgsp1_rep	CDS	8472708	8473203	.	-	1	Parent=Os08t0240000-02
Chr08	irgsp1_rep	three_prime_UTR	8472521	8472707	.	-	.	Parent=Os08t0240000-02
Chr08	irgsp1_rep	mRNA	8479583	8481489	.	+	.	ID=Os08t0240200-01;Name=Os08t0240200-01;Locus_id=Os08g0240200;Note=Conserved hypothetical protein.;Transcript_evidence=AK240812 (DDBJ%2C Best hit);ORF_evidence=NP_001175459.1 (RefSeq);NIAS_FLcDNA=J065007C20;TENOR=Os08t0240200-01;KEGG=Os08t0240200-01
Chr08	irgsp1_rep	five_prime_UTR	8479583	8480466	.	+	.	Parent=Os08t0240200-01
Chr08	irgsp1_rep	CDS	8480467	8480772	.	+	0	Parent=Os08t0240200-01
Chr08	irgsp1_rep	three_prime_UTR	8480773	8481489	.	+	.	Parent=Os08t0240200-01
Chr08	irgsp1_rep	mRNA	8488370	8489782	.	+	.	ID=Os08t0240500-00;Name=Os08t0240500-00;Locus_id=Os08g0240500;CGSNL Gene Symbol=XTH4;CGSNL Gene Name=XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 4;Oryzabase Gene Symbol Synonym(s)=OsXTH4;Oryzabase Gene Name Synonym(s)=xyloglucan endotransglucosylase/hydrolase%2C xyloglucan endotransglucosylase 4;Note=Glycoside hydrolase%2C family 16 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6ZAN9 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: cellular glucan metabolic process (GO:0006073),Cellular Component: cell wall (GO:0005618),Cellular Component: apoplast (GO:0048046),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762);InterPro=Glycoside hydrolase%2C family 16 (IPR000757),Concanavalin A-like lectin/glucanase (IPR008985),Xyloglucan endo-transglycosylase%2C C-terminal (IPR010713),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320);Oryzabase=6512;TENOR=Os08t0240500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	8488370	8488677	.	+	0	Parent=Os08t0240500-00
Chr08	irgsp1_rep	CDS	8489401	8489782	.	+	1	Parent=Os08t0240500-00
Chr08	irgsp1_rep	mRNA	8494099	8495316	.	+	.	ID=Os08t0240566-00;Name=Os08t0240566-00;Locus_id=Os08g0240566;Note=Similar to OSIGBa0118P15.7 protein.;Transcript_evidence=EF103136 (DDBJ);ORF_evidence=Q01KK4 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: cellular glucan metabolic process (GO:0006073),Cellular Component: cell wall (GO:0005618),Cellular Component: apoplast (GO:0048046),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762);InterPro=Glycoside hydrolase%2C family 16 (IPR000757),Glycoside hydrolase%2C family 16%2C active site (IPR008263),Concanavalin A-like lectin/glucanase (IPR008985),Xyloglucan endo-transglycosylase%2C C-terminal (IPR010713),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Xyloglucan endotransglucosylase/hydrolase (IPR016455);TENOR=Os08t0240566-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	8494099	8494470	.	+	0	Parent=Os08t0240566-00
Chr08	irgsp1_rep	CDS	8494554	8494753	.	+	0	Parent=Os08t0240566-00
Chr08	irgsp1_rep	CDS	8494929	8495316	.	+	1	Parent=Os08t0240566-00
Chr08	irgsp1_rep	mRNA	8497291	8500100	.	-	.	ID=Os08t0240600-00;Name=Os08t0240600-00;Locus_id=Os08g0240600;Note=Similar to predicted protein.;Transcript_evidence=EU969297 (DDBJ);ORF_evidence=B8BC74 (UniProt);TENOR=Os08t0240600-00;KEGG=Os08t0240600-00
Chr08	irgsp1_rep	five_prime_UTR	8500075	8500100	.	-	.	Parent=Os08t0240600-00
Chr08	irgsp1_rep	CDS	8499605	8500074	.	-	0	Parent=Os08t0240600-00
Chr08	irgsp1_rep	CDS	8499010	8499144	.	-	1	Parent=Os08t0240600-00
Chr08	irgsp1_rep	CDS	8498785	8498911	.	-	1	Parent=Os08t0240600-00
Chr08	irgsp1_rep	CDS	8497866	8498003	.	-	0	Parent=Os08t0240600-00
Chr08	irgsp1_rep	CDS	8497671	8497781	.	-	0	Parent=Os08t0240600-00
Chr08	irgsp1_rep	three_prime_UTR	8497646	8497670	.	-	.	Parent=Os08t0240600-00
Chr08	irgsp1_rep	three_prime_UTR	8497291	8497568	.	-	.	Parent=Os08t0240600-00
Chr08	irgsp1_rep	mRNA	8508463	8518590	.	+	.	ID=Os08t0240800-01;Name=Os08t0240800-01;Locus_id=Os08g0240800;Oryzabase Gene Symbol Synonym(s)=VLN5%2C OsVLN5%2C Os VLN5;Oryzabase Gene Name Synonym(s)=VILLIN5%2C VILLIN 5;Note=Similar to Actin filament bundling protein P-115-ABP.;Transcript_evidence=AK122013 (DDBJ%2C Best hit);ORF_evidence=B9FZS8 (UniProt);GO=Biological Process: cytoskeleton organization (GO:0007010),Molecular Function: actin binding (GO:0003779);InterPro=Villin headpiece (IPR003128),Gelsolin (IPR007122),Gelsolin domain (IPR007123);NIAS_FLcDNA=J033111J02;Oryzabase=20287;Expression=AK122013;TENOR=Os08t0240800-01;KEGG=Os08t0240800-01
Chr08	irgsp1_rep	five_prime_UTR	8508463	8508628	.	+	.	Parent=Os08t0240800-01
Chr08	irgsp1_rep	five_prime_UTR	8509565	8509621	.	+	.	Parent=Os08t0240800-01
Chr08	irgsp1_rep	CDS	8509622	8509677	.	+	0	Parent=Os08t0240800-01
Chr08	irgsp1_rep	CDS	8510234	8510333	.	+	1	Parent=Os08t0240800-01
Chr08	irgsp1_rep	CDS	8511068	8511136	.	+	0	Parent=Os08t0240800-01
Chr08	irgsp1_rep	CDS	8511213	8511453	.	+	0	Parent=Os08t0240800-01
Chr08	irgsp1_rep	CDS	8511537	8511716	.	+	2	Parent=Os08t0240800-01
Chr08	irgsp1_rep	CDS	8511805	8511937	.	+	2	Parent=Os08t0240800-01
Chr08	irgsp1_rep	CDS	8512045	8512207	.	+	1	Parent=Os08t0240800-01
Chr08	irgsp1_rep	CDS	8513374	8513524	.	+	0	Parent=Os08t0240800-01
Chr08	irgsp1_rep	CDS	8513609	8513709	.	+	2	Parent=Os08t0240800-01
Chr08	irgsp1_rep	CDS	8513976	8514131	.	+	0	Parent=Os08t0240800-01
Chr08	irgsp1_rep	CDS	8514448	8514516	.	+	0	Parent=Os08t0240800-01
Chr08	irgsp1_rep	CDS	8514599	8514667	.	+	0	Parent=Os08t0240800-01
Chr08	irgsp1_rep	CDS	8514746	8514883	.	+	0	Parent=Os08t0240800-01
Chr08	irgsp1_rep	CDS	8514982	8515110	.	+	0	Parent=Os08t0240800-01
Chr08	irgsp1_rep	CDS	8516176	8516323	.	+	0	Parent=Os08t0240800-01
Chr08	irgsp1_rep	CDS	8516439	8516449	.	+	2	Parent=Os08t0240800-01
Chr08	irgsp1_rep	CDS	8516542	8516682	.	+	0	Parent=Os08t0240800-01
Chr08	irgsp1_rep	CDS	8516771	8516896	.	+	0	Parent=Os08t0240800-01
Chr08	irgsp1_rep	CDS	8517014	8517079	.	+	0	Parent=Os08t0240800-01
Chr08	irgsp1_rep	CDS	8517337	8517634	.	+	0	Parent=Os08t0240800-01
Chr08	irgsp1_rep	CDS	8517730	8517938	.	+	2	Parent=Os08t0240800-01
Chr08	irgsp1_rep	CDS	8518032	8518145	.	+	0	Parent=Os08t0240800-01
Chr08	irgsp1_rep	three_prime_UTR	8518146	8518590	.	+	.	Parent=Os08t0240800-01
Chr08	irgsp1_rep	mRNA	8527768	8528653	.	+	.	ID=Os08t0240966-00;Name=Os08t0240966-00;Locus_id=Os08g0240966;Note=Non-protein coding transcript.;Transcript_evidence=CT836001 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os08t0240966-00
Chr08	irgsp1_rep	exon	8527768	8528653	.	+	.	Parent=Os08t0240966-00
Chr08	irgsp1_rep	mRNA	8570830	8575238	.	+	.	ID=Os08t0241300-01;Name=Os08t0241300-01;Locus_id=Os08g0241300;Note=Similar to OSIGBa0118P15.3 protein.;Transcript_evidence=AK108203 (DDBJ%2C Best hit);ORF_evidence=Q01KK8 (UniProt);NIAS_FLcDNA=002-140-D02;Expression=AK108203;TENOR=Os08t0241300-01;KEGG=Os08t0241300-01
Chr08	irgsp1_rep	five_prime_UTR	8570830	8570902	.	+	.	Parent=Os08t0241300-01
Chr08	irgsp1_rep	CDS	8570903	8570990	.	+	0	Parent=Os08t0241300-01
Chr08	irgsp1_rep	CDS	8574465	8574652	.	+	2	Parent=Os08t0241300-01
Chr08	irgsp1_rep	three_prime_UTR	8574653	8575238	.	+	.	Parent=Os08t0241300-01
Chr08	irgsp1_rep	mRNA	8581992	8584058	.	+	.	ID=Os08t0241400-00;Name=Os08t0241400-00;Locus_id=Os08g0241400;Oryzabase Gene Symbol Synonym(s)=OsRFP;Oryzabase Gene Name Synonym(s)=RING finger protein;Note=Similar to protein binding protein.;Transcript_evidence=EU961893 (DDBJ);ORF_evidence=NP_001149055.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);Oryzabase=21158;TENOR=Os08t0241400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	8581992	8582780	.	+	0	Parent=Os08t0241400-00
Chr08	irgsp1_rep	CDS	8582946	8583005	.	+	0	Parent=Os08t0241400-00
Chr08	irgsp1_rep	CDS	8583142	8583288	.	+	0	Parent=Os08t0241400-00
Chr08	irgsp1_rep	CDS	8583733	8583870	.	+	0	Parent=Os08t0241400-00
Chr08	irgsp1_rep	three_prime_UTR	8583871	8584058	.	+	.	Parent=Os08t0241400-00
Chr08	irgsp1_rep	mRNA	8589245	8594472	.	-	.	ID=Os08t0241600-01;Name=Os08t0241600-01;Locus_id=Os08g0241600;Note=Similar to apospory-associated protein C.;Transcript_evidence=AK240826 (DDBJ%2C Best hit);ORF_evidence=B6TB26 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: isomerase activity (GO:0016853),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Aldose 1-epimerase (IPR008183),Glycoside hydrolase-type carbohydrate-binding (IPR011013),Glycoside hydrolase-type carbohydrate-binding%2C subgroup (IPR014718);NIAS_FLcDNA=J065013I20;TENOR=Os08t0241600-01;KEGG=Os08t0241600-01
Chr08	irgsp1_rep	five_prime_UTR	8594330	8594472	.	-	.	Parent=Os08t0241600-01
Chr08	irgsp1_rep	CDS	8594165	8594329	.	-	0	Parent=Os08t0241600-01
Chr08	irgsp1_rep	CDS	8592744	8592818	.	-	0	Parent=Os08t0241600-01
Chr08	irgsp1_rep	CDS	8592340	8592396	.	-	0	Parent=Os08t0241600-01
Chr08	irgsp1_rep	CDS	8592099	8592259	.	-	0	Parent=Os08t0241600-01
Chr08	irgsp1_rep	CDS	8591848	8591988	.	-	1	Parent=Os08t0241600-01
Chr08	irgsp1_rep	CDS	8591180	8591282	.	-	1	Parent=Os08t0241600-01
Chr08	irgsp1_rep	CDS	8590996	8591095	.	-	0	Parent=Os08t0241600-01
Chr08	irgsp1_rep	CDS	8590688	8590899	.	-	2	Parent=Os08t0241600-01
Chr08	irgsp1_rep	three_prime_UTR	8590661	8590687	.	-	.	Parent=Os08t0241600-01
Chr08	irgsp1_rep	three_prime_UTR	8589245	8589668	.	-	.	Parent=Os08t0241600-01
Chr08	irgsp1_rep	mRNA	8613746	8615699	.	-	.	ID=Os08t0241800-01;Name=Os08t0241800-01;Locus_id=Os08g0241800;Note=Similar to Plasma membrane H+-ATPase (EC 3.6.1.3).;Transcript_evidence=AK108449 (DDBJ%2C Best hit);ORF_evidence=Q8RW30 (UniProt);InterPro=ATPase%2C P-type%2C  transmembrane domain (IPR023298);NIAS_FLcDNA=002-143-C07;Expression=AK108449;TENOR=Os08t0241800-01;KEGG=Os08t0241800-01 (EC:3.6.1.3%2C EC:3.6.3.6)
Chr08	irgsp1_rep	five_prime_UTR	8615582	8615699	.	-	.	Parent=Os08t0241800-01
Chr08	irgsp1_rep	CDS	8615540	8615581	.	-	0	Parent=Os08t0241800-01
Chr08	irgsp1_rep	CDS	8615355	8615436	.	-	0	Parent=Os08t0241800-01
Chr08	irgsp1_rep	CDS	8615108	8615268	.	-	2	Parent=Os08t0241800-01
Chr08	irgsp1_rep	CDS	8614838	8615008	.	-	0	Parent=Os08t0241800-01
Chr08	irgsp1_rep	CDS	8614517	8614699	.	-	0	Parent=Os08t0241800-01
Chr08	irgsp1_rep	CDS	8614133	8614426	.	-	0	Parent=Os08t0241800-01
Chr08	irgsp1_rep	three_prime_UTR	8613746	8614132	.	-	.	Parent=Os08t0241800-01
Chr08	irgsp1_rep	mRNA	8615720	8617846	.	+	.	ID=Os08t0241900-01;Name=Os08t0241900-01;Locus_id=Os08g0241900;Note=Hypothetical protein.;Transcript_evidence=AK106690 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-114-C06;Expression=AK106690;TENOR=Os08t0241900-01;KEGG=Os08t0241900-01
Chr08	irgsp1_rep	five_prime_UTR	8615720	8616744	.	+	.	Parent=Os08t0241900-01
Chr08	irgsp1_rep	CDS	8616745	8617113	.	+	0	Parent=Os08t0241900-01
Chr08	irgsp1_rep	three_prime_UTR	8617114	8617846	.	+	.	Parent=Os08t0241900-01
Chr08	irgsp1_rep	mRNA	8639193	8640760	.	-	.	ID=Os08t0242400-01;Name=Os08t0242400-01;Locus_id=Os08g0242400;CGSNL Gene Symbol=WOX10;CGSNL Gene Name=WUSCHEL-LIKE HOMEOBOX 10;Oryzabase Gene Symbol Synonym(s)=OsWOX10%2C Os WOX10%2C OsWOX11/12%2C OsWOX11;Oryzabase Gene Name Synonym(s)=WUSCHEL-related homeobox 10;Note=Similar to WUSCHEL-related homeobox 8.;Transcript_evidence=AK107305 (DDBJ%2C Best hit);ORF_evidence=Q6Z3L4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);NIAS_FLcDNA=002-126-D01;Oryzabase=13226;Expression=AK107305;TENOR=Os08t0242400-01;KEGG=Os08t0242400-01
Chr08	irgsp1_rep	five_prime_UTR	8640582	8640760	.	-	.	Parent=Os08t0242400-01
Chr08	irgsp1_rep	CDS	8639924	8640581	.	-	0	Parent=Os08t0242400-01
Chr08	irgsp1_rep	CDS	8639564	8639742	.	-	2	Parent=Os08t0242400-01
Chr08	irgsp1_rep	CDS	8639406	8639423	.	-	0	Parent=Os08t0242400-01
Chr08	irgsp1_rep	three_prime_UTR	8639193	8639405	.	-	.	Parent=Os08t0242400-01
Chr08	irgsp1_rep	mRNA	8668958	8672734	.	-	.	ID=Os08t0242700-01;Name=Os08t0242700-01;Locus_id=Os08g0242700;Note=Similar to uridylyltransferase-related.;Transcript_evidence=AK068554 (DDBJ%2C Best hit);ORF_evidence=NP_564010.1 (RefSeq);NIAS_FLcDNA=J013155B11;TENOR=Os08t0242700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	8672506	8672734	.	-	.	Parent=Os08t0242700-01
Chr08	irgsp1_rep	five_prime_UTR	8671229	8671351	.	-	.	Parent=Os08t0242700-01
Chr08	irgsp1_rep	CDS	8671100	8671228	.	-	0	Parent=Os08t0242700-01
Chr08	irgsp1_rep	CDS	8670904	8670998	.	-	0	Parent=Os08t0242700-01
Chr08	irgsp1_rep	CDS	8670653	8670737	.	-	1	Parent=Os08t0242700-01
Chr08	irgsp1_rep	CDS	8670506	8670565	.	-	0	Parent=Os08t0242700-01
Chr08	irgsp1_rep	CDS	8670066	8670287	.	-	0	Parent=Os08t0242700-01
Chr08	irgsp1_rep	three_prime_UTR	8669753	8670065	.	-	.	Parent=Os08t0242700-01
Chr08	irgsp1_rep	three_prime_UTR	8669603	8669671	.	-	.	Parent=Os08t0242700-01
Chr08	irgsp1_rep	three_prime_UTR	8668958	8669411	.	-	.	Parent=Os08t0242700-01
Chr08	irgsp1_rep	mRNA	8669224	8670288	.	-	.	ID=Os08t0242700-02;Name=Os08t0242700-02;Locus_id=Os08g0242700;Note=Similar to uridylyltransferase-related.;Transcript_evidence=AK059049 (DDBJ%2C Best hit);ORF_evidence=NP_564010.1 (RefSeq);NIAS_FLcDNA=001-021-E01;Expression=AK059049;TENOR=Os08t0242700-02;KEGG=Os08t0242700-02
Chr08	irgsp1_rep	five_prime_UTR	8670288	8670288	.	-	.	Parent=Os08t0242700-02
Chr08	irgsp1_rep	CDS	8670232	8670287	.	-	0	Parent=Os08t0242700-02
Chr08	irgsp1_rep	CDS	8669753	8669858	.	-	1	Parent=Os08t0242700-02
Chr08	irgsp1_rep	CDS	8669603	8669671	.	-	0	Parent=Os08t0242700-02
Chr08	irgsp1_rep	CDS	8669349	8669411	.	-	0	Parent=Os08t0242700-02
Chr08	irgsp1_rep	three_prime_UTR	8669224	8669348	.	-	.	Parent=Os08t0242700-02
Chr08	irgsp1_rep	mRNA	8677955	8681460	.	+	.	ID=Os08t0242800-01;Name=Os08t0242800-01;Locus_id=Os08g0242800;CGSNL Gene Symbol=SIG6;CGSNL Gene Name=SIGMA FACTOR 6;Oryzabase Gene Symbol Synonym(s)=OsSIG6%2C OsSig6;Oryzabase Gene Name Synonym(s)=Sigma factor SIG6;Note=Similar to Sigma factor SIG6.;Transcript_evidence=AK068874 (DDBJ%2C Best hit);ORF_evidence=B4FJ30 (UniProt);GO=Biological Process: transcription initiation%2C DNA-dependent (GO:0006352),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sigma factor activity (GO:0016987);InterPro=RNA polymerase sigma-70 factor (IPR000943),RNA polymerase sigma-70 region 3 (IPR007624),RNA polymerase sigma-70 region 2 (IPR007627),RNA polymerase sigma-70 region 4 (IPR007630),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),RNA polymerase sigma factor%2C region 3/4 (IPR013324),RNA polymerase sigma factor%2C region 2 (IPR013325),RNA polymerase sigma-70 (IPR014284),RNA polymerase sigma factor%2C SigB/SigC/SigD%2C plastid (IPR016262);NIAS_FLcDNA=J013170C15;Oryzabase=9718;Expression=AK068874;TENOR=Os08t0242800-01;KEGG=Os08t0242800-01
Chr08	irgsp1_rep	five_prime_UTR	8677955	8678128	.	+	.	Parent=Os08t0242800-01
Chr08	irgsp1_rep	CDS	8678129	8678258	.	+	0	Parent=Os08t0242800-01
Chr08	irgsp1_rep	CDS	8678355	8678536	.	+	2	Parent=Os08t0242800-01
Chr08	irgsp1_rep	CDS	8678686	8678801	.	+	0	Parent=Os08t0242800-01
Chr08	irgsp1_rep	CDS	8678947	8679099	.	+	1	Parent=Os08t0242800-01
Chr08	irgsp1_rep	CDS	8679211	8679487	.	+	1	Parent=Os08t0242800-01
Chr08	irgsp1_rep	CDS	8679590	8679823	.	+	0	Parent=Os08t0242800-01
Chr08	irgsp1_rep	CDS	8679910	8680050	.	+	0	Parent=Os08t0242800-01
Chr08	irgsp1_rep	CDS	8680148	8680345	.	+	0	Parent=Os08t0242800-01
Chr08	irgsp1_rep	CDS	8680810	8681097	.	+	0	Parent=Os08t0242800-01
Chr08	irgsp1_rep	three_prime_UTR	8681098	8681460	.	+	.	Parent=Os08t0242800-01
Chr08	irgsp1_rep	mRNA	8678003	8681453	.	+	.	ID=Os08t0242800-02;Name=Os08t0242800-02;Locus_id=Os08g0242800;CGSNL Gene Symbol=SIG6;CGSNL Gene Name=SIGMA FACTOR 6;Oryzabase Gene Symbol Synonym(s)=OsSIG6%2C OsSig6;Oryzabase Gene Name Synonym(s)=Sigma factor SIG6;Note=Similar to Sigma factor SIG6.;Transcript_evidence=AK099922 (DDBJ%2C Best hit);ORF_evidence=B4FJ30 (UniProt);GO=Biological Process: transcription initiation%2C DNA-dependent (GO:0006352),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sigma factor activity (GO:0016987);InterPro=RNA polymerase sigma-70 factor (IPR000943),RNA polymerase sigma-70 region 3 (IPR007624),RNA polymerase sigma-70 region 2 (IPR007627),RNA polymerase sigma-70 region 4 (IPR007630),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),RNA polymerase sigma factor%2C region 3/4 (IPR013324),RNA polymerase sigma factor%2C region 2 (IPR013325),RNA polymerase sigma-70 (IPR014284),RNA polymerase sigma factor%2C SigB/SigC/SigD%2C plastid (IPR016262);NIAS_FLcDNA=J013116M03;Oryzabase=9718;Expression=AK099922;TENOR=Os08t0242800-02;KEGG=Os08t0242800-02
Chr08	irgsp1_rep	five_prime_UTR	8678003	8678128	.	+	.	Parent=Os08t0242800-02
Chr08	irgsp1_rep	CDS	8678129	8678258	.	+	0	Parent=Os08t0242800-02
Chr08	irgsp1_rep	CDS	8678355	8678536	.	+	2	Parent=Os08t0242800-02
Chr08	irgsp1_rep	CDS	8678686	8678801	.	+	0	Parent=Os08t0242800-02
Chr08	irgsp1_rep	CDS	8678947	8679099	.	+	1	Parent=Os08t0242800-02
Chr08	irgsp1_rep	CDS	8679211	8679487	.	+	1	Parent=Os08t0242800-02
Chr08	irgsp1_rep	CDS	8679590	8679823	.	+	0	Parent=Os08t0242800-02
Chr08	irgsp1_rep	CDS	8679910	8680050	.	+	0	Parent=Os08t0242800-02
Chr08	irgsp1_rep	CDS	8680148	8680345	.	+	0	Parent=Os08t0242800-02
Chr08	irgsp1_rep	CDS	8680810	8681097	.	+	0	Parent=Os08t0242800-02
Chr08	irgsp1_rep	three_prime_UTR	8681098	8681453	.	+	.	Parent=Os08t0242800-02
Chr08	irgsp1_rep	mRNA	8681628	8686438	.	-	.	ID=Os08t0242900-01;Name=Os08t0242900-01;Locus_id=Os08g0242900;Note=Afadin/alpha-actinin-binding domain containing protein.;Transcript_evidence=AK060264 (DDBJ%2C Best hit),AK103204 (DDBJ%2C Best hit);ORF_evidence=B9FZT2 (UniProt);InterPro=Afadin/alpha-actinin-binding (IPR021622);NIAS_FLcDNA=001-005-B09,J033122D05;Expression=AK060264;TENOR=Os08t0242900-01;KEGG=Os08t0242900-01
Chr08	irgsp1_rep	five_prime_UTR	8686386	8686438	.	-	.	Parent=Os08t0242900-01
Chr08	irgsp1_rep	CDS	8686356	8686385	.	-	0	Parent=Os08t0242900-01
Chr08	irgsp1_rep	CDS	8686210	8686268	.	-	0	Parent=Os08t0242900-01
Chr08	irgsp1_rep	CDS	8685943	8686072	.	-	1	Parent=Os08t0242900-01
Chr08	irgsp1_rep	CDS	8685421	8685518	.	-	0	Parent=Os08t0242900-01
Chr08	irgsp1_rep	CDS	8683959	8684055	.	-	1	Parent=Os08t0242900-01
Chr08	irgsp1_rep	CDS	8683795	8683884	.	-	0	Parent=Os08t0242900-01
Chr08	irgsp1_rep	CDS	8683599	8683661	.	-	0	Parent=Os08t0242900-01
Chr08	irgsp1_rep	CDS	8683441	8683518	.	-	0	Parent=Os08t0242900-01
Chr08	irgsp1_rep	CDS	8683277	8683342	.	-	0	Parent=Os08t0242900-01
Chr08	irgsp1_rep	CDS	8683108	8683185	.	-	0	Parent=Os08t0242900-01
Chr08	irgsp1_rep	CDS	8682744	8682854	.	-	0	Parent=Os08t0242900-01
Chr08	irgsp1_rep	CDS	8682491	8682568	.	-	0	Parent=Os08t0242900-01
Chr08	irgsp1_rep	CDS	8682252	8682371	.	-	0	Parent=Os08t0242900-01
Chr08	irgsp1_rep	CDS	8682061	8682104	.	-	0	Parent=Os08t0242900-01
Chr08	irgsp1_rep	CDS	8681934	8681988	.	-	1	Parent=Os08t0242900-01
Chr08	irgsp1_rep	three_prime_UTR	8681628	8681933	.	-	.	Parent=Os08t0242900-01
Chr08	irgsp1_rep	mRNA	8681711	8683505	.	+	.	ID=Os08t0243001-00;Name=Os08t0243001-00;Locus_id=Os08g0243001;Note=Non-protein coding transcript.;Transcript_evidence=BT017491 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0243001-00
Chr08	irgsp1_rep	exon	8681711	8682019	.	+	.	Parent=Os08t0243001-00
Chr08	irgsp1_rep	exon	8682243	8682360	.	+	.	Parent=Os08t0243001-00
Chr08	irgsp1_rep	exon	8682482	8682567	.	+	.	Parent=Os08t0243001-00
Chr08	irgsp1_rep	exon	8682743	8682882	.	+	.	Parent=Os08t0243001-00
Chr08	irgsp1_rep	exon	8683227	8683344	.	+	.	Parent=Os08t0243001-00
Chr08	irgsp1_rep	exon	8683438	8683505	.	+	.	Parent=Os08t0243001-00
Chr08	irgsp1_rep	mRNA	8703799	8708888	.	+	.	ID=Os08t0243100-01;Name=Os08t0243100-01;Locus_id=Os08g0243100;Note=4'-phosphopantetheinyl transferase domain containing protein.;Transcript_evidence=AK106413 (DDBJ%2C Best hit);ORF_evidence=B6TPH1 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: macromolecule biosynthetic process (GO:0009059),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: holo-[acyl-carrier-protein] synthase activity (GO:0008897);InterPro=Phosphopantethiene-protein transferase (IPR004568),4&apos%3B-phosphopantetheinyl transferase (IPR008278);NIAS_FLcDNA=002-103-A03;Expression=AK106413;TENOR=Os08t0243100-01;KEGG=Os08t0243100-01
Chr08	irgsp1_rep	five_prime_UTR	8703799	8703800	.	+	.	Parent=Os08t0243100-01
Chr08	irgsp1_rep	CDS	8703801	8703931	.	+	0	Parent=Os08t0243100-01
Chr08	irgsp1_rep	CDS	8704339	8704514	.	+	1	Parent=Os08t0243100-01
Chr08	irgsp1_rep	CDS	8706088	8706152	.	+	2	Parent=Os08t0243100-01
Chr08	irgsp1_rep	CDS	8706241	8706342	.	+	0	Parent=Os08t0243100-01
Chr08	irgsp1_rep	CDS	8706448	8706603	.	+	0	Parent=Os08t0243100-01
Chr08	irgsp1_rep	CDS	8707582	8707680	.	+	0	Parent=Os08t0243100-01
Chr08	irgsp1_rep	CDS	8708003	8708123	.	+	0	Parent=Os08t0243100-01
Chr08	irgsp1_rep	CDS	8708225	8708331	.	+	2	Parent=Os08t0243100-01
Chr08	irgsp1_rep	three_prime_UTR	8708332	8708888	.	+	.	Parent=Os08t0243100-01
Chr08	irgsp1_rep	mRNA	8760402	8765182	.	+	.	ID=Os08t0243500-01;Name=Os08t0243500-01;Locus_id=Os08g0243500;Oryzabase Gene Symbol Synonym(s)=OsCPR2;Oryzabase Gene Name Synonym(s)=cytoChrome P450 reductase 2%2C NADPH-cytoChrome P450 reductase 2;Note=Similar to NADPH-cytoChrome P450 oxydoreductase isoform 2.;Transcript_evidence=AK099083 (DDBJ%2C Best hit),AK068915 (DDBJ%2C Best hit);ORF_evidence=B6SS78 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: NADPH-hemoprotein reductase activity (GO:0003958),Molecular Function: iron ion binding (GO:0005506),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Flavodoxin (IPR001094),Oxidoreductase FAD/NAD(P)-binding (IPR001433),Flavoprotein pyridine nucleotide cytoChrome reductase (IPR001709),FAD-binding%2C type 1 (IPR003097),Flavodoxin/nitric oxide synthase (IPR008254),Ferredoxin reductase-type FAD-binding domain (IPR017927),Riboflavin synthase-like beta-barrel (IPR017938),NADPH-cytoChrome p450 reductase%2C FAD-binding%2C alpha-helical domain-3 (IPR023173),NADPH-cytoChrome P450 reductase (IPR023208);NIAS_FLcDNA=J023001A08,J023001C12;Oryzabase=12131;Expression=AK099083;TENOR=Os08t0243500-01;KEGG=Os08t0243500-01 (EC:1.6.2.4)
Chr08	irgsp1_rep	five_prime_UTR	8760402	8760402	.	+	.	Parent=Os08t0243500-01
Chr08	irgsp1_rep	CDS	8760403	8760579	.	+	0	Parent=Os08t0243500-01
Chr08	irgsp1_rep	CDS	8761338	8761397	.	+	0	Parent=Os08t0243500-01
Chr08	irgsp1_rep	CDS	8761517	8761593	.	+	0	Parent=Os08t0243500-01
Chr08	irgsp1_rep	CDS	8761824	8761965	.	+	1	Parent=Os08t0243500-01
Chr08	irgsp1_rep	CDS	8762079	8762115	.	+	0	Parent=Os08t0243500-01
Chr08	irgsp1_rep	CDS	8762195	8762264	.	+	2	Parent=Os08t0243500-01
Chr08	irgsp1_rep	CDS	8762364	8762555	.	+	1	Parent=Os08t0243500-01
Chr08	irgsp1_rep	CDS	8762664	8762756	.	+	1	Parent=Os08t0243500-01
Chr08	irgsp1_rep	CDS	8762888	8763116	.	+	1	Parent=Os08t0243500-01
Chr08	irgsp1_rep	CDS	8763204	8763287	.	+	0	Parent=Os08t0243500-01
Chr08	irgsp1_rep	CDS	8763384	8763535	.	+	0	Parent=Os08t0243500-01
Chr08	irgsp1_rep	CDS	8763622	8763718	.	+	1	Parent=Os08t0243500-01
Chr08	irgsp1_rep	CDS	8763919	8764068	.	+	0	Parent=Os08t0243500-01
Chr08	irgsp1_rep	CDS	8764156	8764233	.	+	0	Parent=Os08t0243500-01
Chr08	irgsp1_rep	CDS	8764325	8764447	.	+	0	Parent=Os08t0243500-01
Chr08	irgsp1_rep	CDS	8764545	8764658	.	+	0	Parent=Os08t0243500-01
Chr08	irgsp1_rep	CDS	8764761	8764841	.	+	0	Parent=Os08t0243500-01
Chr08	irgsp1_rep	three_prime_UTR	8764842	8765182	.	+	.	Parent=Os08t0243500-01
Chr08	irgsp1_rep	mRNA	8762216	8765113	.	+	.	ID=Os08t0243500-02;Name=Os08t0243500-02;Locus_id=Os08g0243500;Oryzabase Gene Symbol Synonym(s)=OsCPR2;Oryzabase Gene Name Synonym(s)=cytoChrome P450 reductase 2%2C NADPH-cytoChrome P450 reductase 2;Note=Similar to NADPH--cytoChrome P450 reductase.;Transcript_evidence=AK101320 (DDBJ%2C Best hit);ORF_evidence=B6SS78 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Oxidoreductase FAD/NAD(P)-binding (IPR001433),Flavoprotein pyridine nucleotide cytoChrome reductase (IPR001709),FAD-binding%2C type 1 (IPR003097),Ferredoxin reductase-type FAD-binding domain (IPR017927),Riboflavin synthase-like beta-barrel (IPR017938),NADPH-cytoChrome p450 reductase%2C FAD-binding%2C alpha-helical domain-3 (IPR023173);NIAS_FLcDNA=J033034E03;Oryzabase=12131;Expression=AK101320;TENOR=Os08t0243500-02;KEGG=Os08t0243500-02 (EC:1.6.2.4)
Chr08	irgsp1_rep	five_prime_UTR	8762216	8762217	.	+	.	Parent=Os08t0243500-02
Chr08	irgsp1_rep	CDS	8762218	8762264	.	+	0	Parent=Os08t0243500-02
Chr08	irgsp1_rep	CDS	8762364	8762555	.	+	1	Parent=Os08t0243500-02
Chr08	irgsp1_rep	CDS	8762664	8762756	.	+	1	Parent=Os08t0243500-02
Chr08	irgsp1_rep	CDS	8762888	8763116	.	+	1	Parent=Os08t0243500-02
Chr08	irgsp1_rep	CDS	8763204	8763287	.	+	0	Parent=Os08t0243500-02
Chr08	irgsp1_rep	CDS	8763384	8763535	.	+	0	Parent=Os08t0243500-02
Chr08	irgsp1_rep	CDS	8763622	8763718	.	+	1	Parent=Os08t0243500-02
Chr08	irgsp1_rep	CDS	8763919	8764068	.	+	0	Parent=Os08t0243500-02
Chr08	irgsp1_rep	CDS	8764156	8764233	.	+	0	Parent=Os08t0243500-02
Chr08	irgsp1_rep	CDS	8764325	8764447	.	+	0	Parent=Os08t0243500-02
Chr08	irgsp1_rep	CDS	8764545	8764658	.	+	0	Parent=Os08t0243500-02
Chr08	irgsp1_rep	CDS	8764761	8764841	.	+	0	Parent=Os08t0243500-02
Chr08	irgsp1_rep	three_prime_UTR	8764842	8765113	.	+	.	Parent=Os08t0243500-02
Chr08	irgsp1_rep	mRNA	8767789	8771574	.	-	.	ID=Os08t0243600-01;Name=Os08t0243600-01;Locus_id=Os08g0243600;Note=Haloacid dehalogenase-like hydrolase domain containing protein.;Transcript_evidence=AK101443 (DDBJ%2C Best hit);ORF_evidence=B6THA2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity (GO:0016787);InterPro=Haloacid dehalogenase-like hydrolase (IPR005834),HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 (IPR006402),HAD-like domain (IPR023214);NIAS_FLcDNA=J033039F04;Expression=AK101443;TENOR=Os08t0243600-01;KEGG=Os08t0243600-01
Chr08	irgsp1_rep	five_prime_UTR	8771514	8771574	.	-	.	Parent=Os08t0243600-01
Chr08	irgsp1_rep	CDS	8771426	8771513	.	-	0	Parent=Os08t0243600-01
Chr08	irgsp1_rep	CDS	8771057	8771281	.	-	2	Parent=Os08t0243600-01
Chr08	irgsp1_rep	CDS	8768773	8768833	.	-	2	Parent=Os08t0243600-01
Chr08	irgsp1_rep	CDS	8768506	8768653	.	-	1	Parent=Os08t0243600-01
Chr08	irgsp1_rep	CDS	8768330	8768406	.	-	0	Parent=Os08t0243600-01
Chr08	irgsp1_rep	CDS	8768130	8768253	.	-	1	Parent=Os08t0243600-01
Chr08	irgsp1_rep	three_prime_UTR	8767789	8768129	.	-	.	Parent=Os08t0243600-01
Chr08	irgsp1_rep	mRNA	8789627	8792452	.	-	.	ID=Os08t0243866-00;Name=Os08t0243866-00;Locus_id=Os08g0243866;Note=Similar to Chromatin remodeling complex subunit.;Transcript_evidence=AK334734 (DDBJ);ORF_evidence=XP_002305447.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524);InterPro=SNF2-related (IPR000330),Helicase%2C C-terminal (IPR001650),DEAD-like helicase (IPR014001);TENOR=Os08t0243866-00;KEGG=Os08t0243866-00
Chr08	irgsp1_rep	CDS	8792237	8792452	.	-	0	Parent=Os08t0243866-00
Chr08	irgsp1_rep	CDS	8789863	8791587	.	-	0	Parent=Os08t0243866-00
Chr08	irgsp1_rep	three_prime_UTR	8789860	8789862	.	-	.	Parent=Os08t0243866-00
Chr08	irgsp1_rep	three_prime_UTR	8789627	8789705	.	-	.	Parent=Os08t0243866-00
Chr08	irgsp1_rep	mRNA	8795683	8797831	.	-	.	ID=Os08t0243900-01;Name=Os08t0243900-01;Locus_id=Os08g0243900;Note=Mu2 adaptin subunit (AP50) of AP2 domain containing protein.;Transcript_evidence=AK121452 (DDBJ%2C Best hit),AK102707 (DDBJ%2C Best hit);ORF_evidence=A2YSV1 (UniProt);InterPro=Muniscin C-terminal mu homology domain (IPR018808);NIAS_FLcDNA=J023142L20,J033104B11;Expression=AK121452;TENOR=Os08t0243900-01;KEGG=Os08t0243900-01
Chr08	irgsp1_rep	five_prime_UTR	8797760	8797831	.	-	.	Parent=Os08t0243900-01
Chr08	irgsp1_rep	CDS	8795834	8797759	.	-	0	Parent=Os08t0243900-01
Chr08	irgsp1_rep	three_prime_UTR	8795683	8795833	.	-	.	Parent=Os08t0243900-01
Chr08	irgsp1_rep	mRNA	8802820	8806880	.	-	.	ID=Os08t0244100-01;Name=Os08t0244100-01;Locus_id=Os08g0244100;Note=Syntaxin 6%2C N-terminal domain containing protein.;Transcript_evidence=AK102977 (DDBJ%2C Best hit),AK101898 (DDBJ%2C Best hit);ORF_evidence=A2YSV2 (UniProt);GO=Biological Process: vesicle-mediated transport (GO:0016192),Biological Process: Golgi vesicle transport (GO:0048193),Cellular Component: membrane (GO:0016020);InterPro=t-SNARE (IPR010989),Syntaxin 6%2C N-terminal (IPR015260);NIAS_FLcDNA=J033115N03,J033071B08;Expression=AK102977;TENOR=Os08t0244100-01;KEGG=Os08t0244100-01
Chr08	irgsp1_rep	five_prime_UTR	8806426	8806880	.	-	.	Parent=Os08t0244100-01
Chr08	irgsp1_rep	CDS	8806343	8806425	.	-	0	Parent=Os08t0244100-01
Chr08	irgsp1_rep	CDS	8805544	8805658	.	-	1	Parent=Os08t0244100-01
Chr08	irgsp1_rep	CDS	8804736	8805425	.	-	0	Parent=Os08t0244100-01
Chr08	irgsp1_rep	CDS	8804018	8804189	.	-	0	Parent=Os08t0244100-01
Chr08	irgsp1_rep	CDS	8803673	8803698	.	-	2	Parent=Os08t0244100-01
Chr08	irgsp1_rep	three_prime_UTR	8802820	8803672	.	-	.	Parent=Os08t0244100-01
Chr08	irgsp1_rep	mRNA	8803165	8806506	.	-	.	ID=Os08t0244100-03;Name=Os08t0244100-03;Locus_id=Os08g0244100;Note=Syntaxin 6%2C N-terminal domain containing protein.;Transcript_evidence=AK064015 (DDBJ%2C Best hit);ORF_evidence=A2YSV2 (UniProt);GO=Biological Process: vesicle-mediated transport (GO:0016192),Biological Process: Golgi vesicle transport (GO:0048193),Cellular Component: membrane (GO:0016020);InterPro=t-SNARE (IPR010989),Syntaxin 6%2C N-terminal (IPR015260);NIAS_FLcDNA=001-124-H06;Expression=AK064015;TENOR=Os08t0244100-03;KEGG=Os08t0244100-03
Chr08	irgsp1_rep	five_prime_UTR	8806426	8806506	.	-	.	Parent=Os08t0244100-03
Chr08	irgsp1_rep	CDS	8806343	8806425	.	-	0	Parent=Os08t0244100-03
Chr08	irgsp1_rep	CDS	8805544	8805658	.	-	1	Parent=Os08t0244100-03
Chr08	irgsp1_rep	CDS	8804736	8805425	.	-	0	Parent=Os08t0244100-03
Chr08	irgsp1_rep	CDS	8804018	8804189	.	-	0	Parent=Os08t0244100-03
Chr08	irgsp1_rep	CDS	8803673	8803698	.	-	2	Parent=Os08t0244100-03
Chr08	irgsp1_rep	three_prime_UTR	8803165	8803672	.	-	.	Parent=Os08t0244100-03
Chr08	irgsp1_rep	mRNA	8812892	8816699	.	-	.	ID=Os08t0244400-01;Name=Os08t0244400-01;Locus_id=Os08g0244400;Oryzabase Gene Symbol Synonym(s)=OsSET29;Oryzabase Gene Name Synonym(s)=SET protein 29;Note=SET domain containing protein.;Transcript_evidence=AK103017 (DDBJ%2C Best hit);ORF_evidence=NP_001151788.1 (RefSeq);NIAS_FLcDNA=J033116N08;Oryzabase=13393;Expression=AK103017;TENOR=Os08t0244400-01;KEGG=Os08t0244400-01
Chr08	irgsp1_rep	five_prime_UTR	8816599	8816699	.	-	.	Parent=Os08t0244400-01
Chr08	irgsp1_rep	CDS	8816491	8816598	.	-	0	Parent=Os08t0244400-01
Chr08	irgsp1_rep	CDS	8815493	8815615	.	-	0	Parent=Os08t0244400-01
Chr08	irgsp1_rep	CDS	8815094	8815382	.	-	0	Parent=Os08t0244400-01
Chr08	irgsp1_rep	CDS	8814467	8814585	.	-	2	Parent=Os08t0244400-01
Chr08	irgsp1_rep	CDS	8814022	8814154	.	-	0	Parent=Os08t0244400-01
Chr08	irgsp1_rep	CDS	8813870	8813946	.	-	2	Parent=Os08t0244400-01
Chr08	irgsp1_rep	CDS	8813588	8813785	.	-	0	Parent=Os08t0244400-01
Chr08	irgsp1_rep	CDS	8813312	8813498	.	-	0	Parent=Os08t0244400-01
Chr08	irgsp1_rep	CDS	8812892	8813055	.	-	2	Parent=Os08t0244400-01
Chr08	irgsp1_rep	mRNA	8811775	8813523	.	-	.	ID=Os08t0244400-02;Name=Os08t0244400-02;Locus_id=Os08g0244400;Oryzabase Gene Symbol Synonym(s)=OsSET29;Oryzabase Gene Name Synonym(s)=SET protein 29;Note=Similar to SET domain containing protein.;Transcript_evidence=AK072666 (DDBJ%2C Best hit);ORF_evidence=NP_001151788.1 (RefSeq);NIAS_FLcDNA=J023134A15;Oryzabase=13393;Expression=AK072666;TENOR=Os08t0244400-02;KEGG=Os08t0244400-02
Chr08	irgsp1_rep	five_prime_UTR	8813499	8813523	.	-	.	Parent=Os08t0244400-02
Chr08	irgsp1_rep	CDS	8813312	8813498	.	-	0	Parent=Os08t0244400-02
Chr08	irgsp1_rep	CDS	8812862	8813055	.	-	2	Parent=Os08t0244400-02
Chr08	irgsp1_rep	CDS	8812659	8812750	.	-	0	Parent=Os08t0244400-02
Chr08	irgsp1_rep	CDS	8812449	8812563	.	-	1	Parent=Os08t0244400-02
Chr08	irgsp1_rep	three_prime_UTR	8811775	8812448	.	-	.	Parent=Os08t0244400-02
Chr08	irgsp1_rep	mRNA	8837400	8839354	.	+	.	ID=Os08t0244500-00;Name=Os08t0244500-00;Locus_id=Os08g0244500;Note=Similar to hydrolase%2C hydrolyzing O-glycosyl compounds.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001151472.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);TENOR=Os08t0244500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	8837400	8838732	.	+	0	Parent=Os08t0244500-00
Chr08	irgsp1_rep	CDS	8838845	8839099	.	+	2	Parent=Os08t0244500-00
Chr08	irgsp1_rep	CDS	8839251	8839354	.	+	2	Parent=Os08t0244500-00
Chr08	irgsp1_rep	mRNA	8838319	8839100	.	-	.	ID=Os08t0244625-00;Name=Os08t0244625-00;Locus_id=Os08g0244625;Note=Non-protein coding transcript.;Transcript_evidence=BT019229 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0244625-00
Chr08	irgsp1_rep	exon	8838862	8839100	.	-	.	Parent=Os08t0244625-00
Chr08	irgsp1_rep	exon	8838319	8838574	.	-	.	Parent=Os08t0244625-00
Chr08	irgsp1_rep	mRNA	8850008	8852859	.	+	.	ID=Os08t0244750-01;Name=Os08t0244750-01;Locus_id=Os08g0244750;Note=Conserved hypothetical protein.;Transcript_evidence=AK241689 (DDBJ%2C Best hit);ORF_evidence=Q6Z9W9 (UniProt);NIAS_FLcDNA=J065194L07;TENOR=Os08t0244750-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	8850008	8850145	.	+	.	Parent=Os08t0244750-01
Chr08	irgsp1_rep	five_prime_UTR	8852118	8852222	.	+	.	Parent=Os08t0244750-01
Chr08	irgsp1_rep	five_prime_UTR	8852355	8852451	.	+	.	Parent=Os08t0244750-01
Chr08	irgsp1_rep	CDS	8852452	8852577	.	+	0	Parent=Os08t0244750-01
Chr08	irgsp1_rep	three_prime_UTR	8852578	8852859	.	+	.	Parent=Os08t0244750-01
Chr08	irgsp1_rep	mRNA	8856335	8858424	.	+	.	ID=Os08t0244800-01;Name=Os08t0244800-01;Locus_id=Os08g0244800;Note=Non-protein coding transcript.;Transcript_evidence=AK101131 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J033026D12;TENOR=Os08t0244800-01
Chr08	irgsp1_rep	exon	8856335	8858424	.	+	.	Parent=Os08t0244800-01
Chr08	irgsp1_rep	mRNA	8874179	8878862	.	+	.	ID=Os08t0245200-01;Name=Os08t0245200-01;Locus_id=Os08g0245200;RAP-DB Gene Symbol Synonym(s)=4CL1%2C Os4CL1;RAP-DB Gene Name Synonym(s)=4-COUMARATE:COENZYME A LIGASE 1%2C 4-Coumarate:coenzyme A ligase 1;CGSNL Gene Symbol=4CL1;CGSNL Gene Name=4-COUMARATE:COENZYME A LIGASE 1;Oryzabase Gene Symbol Synonym(s)=Os4CL1%2C 4-CL%2C 4-CL. 1;Oryzabase Gene Name Synonym(s)=4-coumarate:coenzyme A ligase 1%2C 4-coumarate-CoA ligase;Note=4-coumarate:coenzyme A ligase%2C Lignin biosynthesis;Transcript_evidence=AK069932;ORF_evidence=P17814;GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873),AMP-binding enzyme%2C C-terminal domain (IPR025110),AMP-binding%2C conserved site (IPR020845);NIAS_FLcDNA=J023036P12;Manual Curation=May 25%2C 2017;Literature_PMID=23246835,21807887;Oryzabase=9680;Expression=AK069932;TENOR=Os08t0245200-01;KEGG=Os08t0245200-01 (EC:6.2.1.12)
Chr08	irgsp1_rep	five_prime_UTR	8874179	8874228	.	+	.	Parent=Os08t0245200-01
Chr08	irgsp1_rep	CDS	8874229	8875281	.	+	0	Parent=Os08t0245200-01
Chr08	irgsp1_rep	CDS	8876230	8876428	.	+	0	Parent=Os08t0245200-01
Chr08	irgsp1_rep	CDS	8877843	8878056	.	+	2	Parent=Os08t0245200-01
Chr08	irgsp1_rep	CDS	8878197	8878302	.	+	1	Parent=Os08t0245200-01
Chr08	irgsp1_rep	CDS	8878420	8878542	.	+	0	Parent=Os08t0245200-01
Chr08	irgsp1_rep	three_prime_UTR	8878543	8878862	.	+	.	Parent=Os08t0245200-01
Chr08	irgsp1_rep	mRNA	8874383	8878050	.	-	.	ID=Os08t0245301-00;Name=Os08t0245301-00;Locus_id=Os08g0245301;Note=Hypothetical gene.;Transcript_evidence=tplb0058f21 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0245301-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	8877817	8878050	.	-	.	Parent=Os08t0245301-00
Chr08	irgsp1_rep	five_prime_UTR	8876216	8876399	.	-	.	Parent=Os08t0245301-00
Chr08	irgsp1_rep	five_prime_UTR	8875002	8875272	.	-	.	Parent=Os08t0245301-00
Chr08	irgsp1_rep	CDS	8874426	8875001	.	-	0	Parent=Os08t0245301-00
Chr08	irgsp1_rep	three_prime_UTR	8874383	8874425	.	-	.	Parent=Os08t0245301-00
Chr08	irgsp1_rep	mRNA	8879953	8888141	.	-	.	ID=Os08t0245400-01;Name=Os08t0245400-01;Locus_id=Os08g0245400;Note=Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 domain containing protein.;Transcript_evidence=AK100945 (DDBJ%2C Best hit);ORF_evidence=NP_200567.2 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: transaminase activity (GO:0008483),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferase class-III (IPR005814),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J023138G14;Expression=AK100945;TENOR=Os08t0245400-01;KEGG=Os08t0245400-01 (EC:2.6.1.62)
Chr08	irgsp1_rep	five_prime_UTR	8888054	8888141	.	-	.	Parent=Os08t0245400-01
Chr08	irgsp1_rep	CDS	8887413	8888053	.	-	0	Parent=Os08t0245400-01
Chr08	irgsp1_rep	CDS	8886539	8886709	.	-	1	Parent=Os08t0245400-01
Chr08	irgsp1_rep	CDS	8886073	8886334	.	-	1	Parent=Os08t0245400-01
Chr08	irgsp1_rep	CDS	8885899	8885976	.	-	0	Parent=Os08t0245400-01
Chr08	irgsp1_rep	CDS	8885626	8885746	.	-	0	Parent=Os08t0245400-01
Chr08	irgsp1_rep	CDS	8885326	8885474	.	-	2	Parent=Os08t0245400-01
Chr08	irgsp1_rep	CDS	8883497	8883591	.	-	0	Parent=Os08t0245400-01
Chr08	irgsp1_rep	CDS	8883164	8883279	.	-	1	Parent=Os08t0245400-01
Chr08	irgsp1_rep	CDS	8882941	8883087	.	-	2	Parent=Os08t0245400-01
Chr08	irgsp1_rep	CDS	8882479	8882612	.	-	2	Parent=Os08t0245400-01
Chr08	irgsp1_rep	CDS	8882004	8882135	.	-	0	Parent=Os08t0245400-01
Chr08	irgsp1_rep	CDS	8881731	8881865	.	-	0	Parent=Os08t0245400-01
Chr08	irgsp1_rep	CDS	8881017	8881129	.	-	0	Parent=Os08t0245400-01
Chr08	irgsp1_rep	CDS	8880248	8880419	.	-	1	Parent=Os08t0245400-01
Chr08	irgsp1_rep	three_prime_UTR	8879953	8880247	.	-	.	Parent=Os08t0245400-01
Chr08	irgsp1_rep	mRNA	8915335	8917400	.	-	.	ID=Os08t0246001-01;Name=Os08t0246001-01;Locus_id=Os08g0246001;Note=Hypothetical gene.;Transcript_evidence=AK318550 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J075135I10;TENOR=Os08t0246001-01;KEGG=Os08t0246001-01
Chr08	irgsp1_rep	five_prime_UTR	8916925	8917400	.	-	.	Parent=Os08t0246001-01
Chr08	irgsp1_rep	CDS	8916903	8916924	.	-	0	Parent=Os08t0246001-01
Chr08	irgsp1_rep	CDS	8916494	8916546	.	-	2	Parent=Os08t0246001-01
Chr08	irgsp1_rep	CDS	8915384	8915551	.	-	0	Parent=Os08t0246001-01
Chr08	irgsp1_rep	three_prime_UTR	8915335	8915383	.	-	.	Parent=Os08t0246001-01
Chr08	irgsp1_rep	mRNA	8922657	8926442	.	-	.	ID=Os08t0246100-01;Name=Os08t0246100-01;Locus_id=Os08g0246100;Note=Hypothetical conserved gene.;Transcript_evidence=AK243553 (DDBJ%2C Best hit);ORF_evidence=Q6Z635 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J100079M04;TENOR=Os08t0246100-01;KEGG=Os08t0246100-01
Chr08	irgsp1_rep	five_prime_UTR	8926373	8926442	.	-	.	Parent=Os08t0246100-01
Chr08	irgsp1_rep	CDS	8925543	8926372	.	-	0	Parent=Os08t0246100-01
Chr08	irgsp1_rep	CDS	8924004	8924877	.	-	1	Parent=Os08t0246100-01
Chr08	irgsp1_rep	three_prime_UTR	8922657	8924003	.	-	.	Parent=Os08t0246100-01
Chr08	irgsp1_rep	mRNA	8939500	8953088	.	+	.	ID=Os08t0246300-01;Name=Os08t0246300-01;Locus_id=Os08g0246300;Note=NB-ARC domain containing protein.;Transcript_evidence=AK073893 (DDBJ%2C Best hit);ORF_evidence=B9FZV3 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J033077K04;Expression=AK073893;TENOR=Os08t0246300-01;KEGG=Os08t0246300-01
Chr08	irgsp1_rep	five_prime_UTR	8939500	8939572	.	+	.	Parent=Os08t0246300-01
Chr08	irgsp1_rep	CDS	8939573	8940140	.	+	0	Parent=Os08t0246300-01
Chr08	irgsp1_rep	CDS	8940282	8940886	.	+	2	Parent=Os08t0246300-01
Chr08	irgsp1_rep	CDS	8944299	8944958	.	+	0	Parent=Os08t0246300-01
Chr08	irgsp1_rep	CDS	8950882	8952792	.	+	0	Parent=Os08t0246300-01
Chr08	irgsp1_rep	three_prime_UTR	8952793	8953088	.	+	.	Parent=Os08t0246300-01
Chr08	irgsp1_rep	mRNA	8939535	8940950	.	-	.	ID=Os08t0246351-00;Name=Os08t0246351-00;Locus_id=Os08g0246351;Note=Hypothetical protein.;Transcript_evidence=FP099851 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0246351-00
Chr08	irgsp1_rep	five_prime_UTR	8940827	8940950	.	-	.	Parent=Os08t0246351-00
Chr08	irgsp1_rep	five_prime_UTR	8940277	8940746	.	-	.	Parent=Os08t0246351-00
Chr08	irgsp1_rep	five_prime_UTR	8939827	8940035	.	-	.	Parent=Os08t0246351-00
Chr08	irgsp1_rep	CDS	8939535	8939826	.	-	0	Parent=Os08t0246351-00
Chr08	irgsp1_rep	mRNA	8955294	8959576	.	+	.	ID=Os08t0246400-01;Name=Os08t0246400-01;Locus_id=Os08g0246400;Note=Similar to Ubiquinol-cytoChrome c reductase complex 14 kDa protein (EC 1.10.2.2) (CR14).;Transcript_evidence=AK066263 (DDBJ%2C Best hit);ORF_evidence=B6TMP9 (UniProt);GO=Biological Process: mitochondrial electron transport%2C ubiquinol to cytoChrome c (GO:0006122),Molecular Function: ubiquinol-cytoChrome-c reductase activity (GO:0008121);InterPro=CytoChrome d ubiquinol oxidase%2C 14kDa subunit (IPR003197);NIAS_FLcDNA=J013059A14;Expression=AK066263;TENOR=Os08t0246400-01;KEGG=Os08t0246400-01 (EC:1.10.2.2)
Chr08	irgsp1_rep	five_prime_UTR	8955294	8955842	.	+	.	Parent=Os08t0246400-01
Chr08	irgsp1_rep	CDS	8955843	8955939	.	+	0	Parent=Os08t0246400-01
Chr08	irgsp1_rep	CDS	8956022	8956185	.	+	2	Parent=Os08t0246400-01
Chr08	irgsp1_rep	CDS	8957448	8957481	.	+	0	Parent=Os08t0246400-01
Chr08	irgsp1_rep	CDS	8958159	8958247	.	+	2	Parent=Os08t0246400-01
Chr08	irgsp1_rep	three_prime_UTR	8958248	8958284	.	+	.	Parent=Os08t0246400-01
Chr08	irgsp1_rep	three_prime_UTR	8958580	8959576	.	+	.	Parent=Os08t0246400-01
Chr08	irgsp1_rep	mRNA	8963793	8964481	.	+	.	ID=Os08t0246500-00;Name=Os08t0246500-00;Locus_id=Os08g0246500;Note=Similar to Mitochondrial GTPase.;Transcript_evidence=EU971900 (DDBJ);ORF_evidence=E5GCK2 (UniProt);TENOR=Os08t0246500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	8963793	8963927	.	+	0	Parent=Os08t0246500-00
Chr08	irgsp1_rep	CDS	8964370	8964477	.	+	0	Parent=Os08t0246500-00
Chr08	irgsp1_rep	three_prime_UTR	8964478	8964481	.	+	.	Parent=Os08t0246500-00
Chr08	irgsp1_rep	mRNA	8964090	8965199	.	-	.	ID=Os08t0246550-00;Name=Os08t0246550-00;Locus_id=Os08g0246550;Note=Hypothetical gene.;Transcript_evidence=CT837564 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;TENOR=Os08t0246550-00;KEGG=Os08t0246550-00
Chr08	irgsp1_rep	CDS	8964859	8965199	.	-	0	Parent=Os08t0246550-00
Chr08	irgsp1_rep	CDS	8964454	8964496	.	-	1	Parent=Os08t0246550-00
Chr08	irgsp1_rep	three_prime_UTR	8964090	8964453	.	-	.	Parent=Os08t0246550-00
Chr08	irgsp1_rep	mRNA	8966304	8966798	.	+	.	ID=Os08t0246700-01;Name=Os08t0246700-01;Locus_id=Os08g0246700;Note=Hypothetical gene.;Transcript_evidence=AK068999 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023002G02;TENOR=Os08t0246700-01;KEGG=Os08t0246700-01
Chr08	irgsp1_rep	CDS	8966304	8966576	.	+	0	Parent=Os08t0246700-01
Chr08	irgsp1_rep	three_prime_UTR	8966577	8966798	.	+	.	Parent=Os08t0246700-01
Chr08	irgsp1_rep	mRNA	8969014	8970841	.	+	.	ID=Os08t0246800-01;Name=Os08t0246800-01;Locus_id=Os08g0246800;Note=Conserved hypothetical protein.;Transcript_evidence=AK060251 (DDBJ%2C Best hit);ORF_evidence=NP_001174465.1 (RefSeq);NIAS_FLcDNA=001-004-C03;TENOR=Os08t0246800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	8969014	8969408	.	+	.	Parent=Os08t0246800-01
Chr08	irgsp1_rep	CDS	8969409	8969670	.	+	0	Parent=Os08t0246800-01
Chr08	irgsp1_rep	CDS	8969747	8969952	.	+	2	Parent=Os08t0246800-01
Chr08	irgsp1_rep	CDS	8970040	8970099	.	+	0	Parent=Os08t0246800-01
Chr08	irgsp1_rep	three_prime_UTR	8970100	8970841	.	+	.	Parent=Os08t0246800-01
Chr08	irgsp1_rep	mRNA	8970292	8970904	.	+	.	ID=Os08t0246800-02;Name=Os08t0246800-02;Locus_id=Os08g0246800;Note=Hypothetical conserved gene.;Transcript_evidence=AK122136 (DDBJ%2C Best hit);ORF_evidence=B8B8P9 (UniProt);NIAS_FLcDNA=J033135J16;Expression=AK122136;TENOR=Os08t0246800-02;KEGG=Os08t0246800-02
Chr08	irgsp1_rep	five_prime_UTR	8970292	8970312	.	+	.	Parent=Os08t0246800-02
Chr08	irgsp1_rep	CDS	8970313	8970750	.	+	0	Parent=Os08t0246800-02
Chr08	irgsp1_rep	three_prime_UTR	8970751	8970904	.	+	.	Parent=Os08t0246800-02
Chr08	irgsp1_rep	mRNA	8977536	8978715	.	-	.	ID=Os08t0246950-00;Name=Os08t0246950-00;Locus_id=Os08g0246950;Note=Hypothetical protein.;Transcript_evidence=CT837784 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os08t0246950-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	8978084	8978715	.	-	.	Parent=Os08t0246950-00
Chr08	irgsp1_rep	CDS	8977841	8978083	.	-	0	Parent=Os08t0246950-00
Chr08	irgsp1_rep	three_prime_UTR	8977536	8977840	.	-	.	Parent=Os08t0246950-00
Chr08	irgsp1_rep	mRNA	9001801	9005304	.	+	.	ID=Os08t0247600-01;Name=Os08t0247600-01;Locus_id=Os08g0247600;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=AK241050 (DDBJ%2C Best hit);ORF_evidence=A3BR53 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J065062H20;TENOR=Os08t0247600-01;KEGG=Os08t0247600-01
Chr08	irgsp1_rep	five_prime_UTR	9001801	9001833	.	+	.	Parent=Os08t0247600-01
Chr08	irgsp1_rep	CDS	9001834	9002445	.	+	0	Parent=Os08t0247600-01
Chr08	irgsp1_rep	three_prime_UTR	9002446	9004517	.	+	.	Parent=Os08t0247600-01
Chr08	irgsp1_rep	three_prime_UTR	9004745	9005304	.	+	.	Parent=Os08t0247600-01
Chr08	irgsp1_rep	mRNA	9016956	9020228	.	+	.	ID=Os08t0247700-00;Name=Os08t0247700-00;Locus_id=Os08g0247700;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FZV9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os08t0247700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	9016956	9019659	.	+	0	Parent=Os08t0247700-00
Chr08	irgsp1_rep	CDS	9019880	9019932	.	+	2	Parent=Os08t0247700-00
Chr08	irgsp1_rep	CDS	9020016	9020228	.	+	0	Parent=Os08t0247700-00
Chr08	irgsp1_rep	mRNA	9030748	9031356	.	-	.	ID=Os08t0248000-00;Name=Os08t0248000-00;Locus_id=Os08g0248000;CGSNL Gene Symbol=G1L13;CGSNL Gene Name=G1 LIKE PROTEIN 13;Oryzabase Gene Symbol Synonym(s)=OsG1L13;Note=Similar to predicted protein.;Transcript_evidence=EU974962 (DDBJ);ORF_evidence=NP_001078202.2 (RefSeq);InterPro=Domain of unknown function DUF640 (IPR006936);Oryzabase=22981;TENOR=Os08t0248000-00;KEGG=Os08t0248000-00
Chr08	irgsp1_rep	CDS	9030748	9031356	.	-	0	Parent=Os08t0248000-00
Chr08	irgsp1_rep	mRNA	9039735	9043242	.	+	.	ID=Os08t0248100-01;Name=Os08t0248100-01;Locus_id=Os08g0248100;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK111640 (DDBJ%2C Best hit);ORF_evidence=B9FZV9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J013127D07;Expression=AK111640;TENOR=Os08t0248100-01;KEGG=Os08t0248100-01
Chr08	irgsp1_rep	five_prime_UTR	9039735	9039793	.	+	.	Parent=Os08t0248100-01
Chr08	irgsp1_rep	CDS	9039794	9042479	.	+	0	Parent=Os08t0248100-01
Chr08	irgsp1_rep	CDS	9042716	9043065	.	+	2	Parent=Os08t0248100-01
Chr08	irgsp1_rep	three_prime_UTR	9043066	9043242	.	+	.	Parent=Os08t0248100-01
Chr08	irgsp1_rep	mRNA	9049938	9051200	.	-	.	ID=Os08t0248300-01;Name=Os08t0248300-01;Locus_id=Os08g0248300;Note=Hypothetical protein.;Transcript_evidence=AK108719 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-150-B12;Expression=AK108719;TENOR=Os08t0248300-01;KEGG=Os08t0248300-01
Chr08	irgsp1_rep	five_prime_UTR	9050982	9051200	.	-	.	Parent=Os08t0248300-01
Chr08	irgsp1_rep	CDS	9050064	9050981	.	-	0	Parent=Os08t0248300-01
Chr08	irgsp1_rep	three_prime_UTR	9049938	9050063	.	-	.	Parent=Os08t0248300-01
Chr08	irgsp1_rep	mRNA	9050060	9051612	.	+	.	ID=Os08t0248400-01;Name=Os08t0248400-01;Locus_id=Os08g0248400;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK109903 (DDBJ%2C Best hit);ORF_evidence=B9FZW1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-149-F11;TENOR=Os08t0248400-01
Chr08	irgsp1_rep	five_prime_UTR	9050060	9050291	.	+	.	Parent=Os08t0248400-01
Chr08	irgsp1_rep	CDS	9050292	9051612	.	+	0	Parent=Os08t0248400-01
Chr08	irgsp1_rep	mRNA	9069082	9070671	.	+	.	ID=Os08t0248700-01;Name=Os08t0248700-01;Locus_id=Os08g0248700;Note=Similar to Blind.;Transcript_evidence=AK111788 (DDBJ%2C Best hit);ORF_evidence=E7D5Q3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J023093J22;Expression=AK111788;TENOR=Os08t0248700-01;KEGG=Os08t0248700-01
Chr08	irgsp1_rep	five_prime_UTR	9069082	9069201	.	+	.	Parent=Os08t0248700-01
Chr08	irgsp1_rep	CDS	9069202	9069337	.	+	0	Parent=Os08t0248700-01
Chr08	irgsp1_rep	CDS	9069547	9069676	.	+	2	Parent=Os08t0248700-01
Chr08	irgsp1_rep	CDS	9069767	9070451	.	+	1	Parent=Os08t0248700-01
Chr08	irgsp1_rep	three_prime_UTR	9070452	9070671	.	+	.	Parent=Os08t0248700-01
Chr08	irgsp1_rep	mRNA	9071719	9075883	.	-	.	ID=Os08t0248800-01;Name=Os08t0248800-01;Locus_id=Os08g0248800;Note=Similar to Aspartate carbamoyltransferase 3%2C chloroplast precursor (EC 2.1.3.2) (Aspartate transcarbamylase 3) (ATCase 3).;Transcript_evidence=AK065010 (DDBJ%2C Best hit);ORF_evidence=B6T6Q7 (UniProt);GO=Biological Process: 'de novo' pyrimidine base biosynthetic process (GO:0006207),Biological Process: cellular amino acid metabolic process (GO:0006520),Molecular Function: aspartate carbamoyltransferase activity (GO:0004070),Molecular Function: amino acid binding (GO:0016597),Molecular Function: carboxyl- or carbamoyltransferase activity (GO:0016743);InterPro=Aspartate carbamoyltransferase%2C eukaryotic (IPR002082),Aspartate/ornithine carbamoyltransferase (IPR006130),Aspartate/ornithine carbamoyltransferase%2C Asp/Orn-binding domain (IPR006131),Aspartate/ornithine carbamoyltransferase%2C carbamoyl-P binding (IPR006132);NIAS_FLcDNA=J013001F02;Expression=AK065010;TENOR=Os08t0248800-01;KEGG=Os08t0248800-01 (EC:2.1.3.2)
Chr08	irgsp1_rep	five_prime_UTR	9075822	9075883	.	-	.	Parent=Os08t0248800-01
Chr08	irgsp1_rep	CDS	9075389	9075821	.	-	0	Parent=Os08t0248800-01
Chr08	irgsp1_rep	CDS	9073870	9074009	.	-	2	Parent=Os08t0248800-01
Chr08	irgsp1_rep	CDS	9073014	9073187	.	-	0	Parent=Os08t0248800-01
Chr08	irgsp1_rep	CDS	9072673	9072909	.	-	0	Parent=Os08t0248800-01
Chr08	irgsp1_rep	CDS	9071916	9072023	.	-	0	Parent=Os08t0248800-01
Chr08	irgsp1_rep	three_prime_UTR	9071719	9071915	.	-	.	Parent=Os08t0248800-01
Chr08	irgsp1_rep	mRNA	9081566	9086469	.	+	.	ID=Os08t0248900-01;Name=Os08t0248900-01;Locus_id=Os08g0248900;CGSNL Gene Symbol=ARF3;CGSNL Gene Name=ADP-RIBOSYLATION FACTOR 3;Oryzabase Gene Symbol Synonym(s)=OsARF3%2C ARF3;Oryzabase Gene Name Synonym(s)=ADP-ribosylation factor 3;Note=Similar to ADP-ribosylation factor 3.;Transcript_evidence=AK073613 (DDBJ%2C Best hit);ORF_evidence=B4FM64 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: small GTPase mediated signal transduction (GO:0007264),Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C SAR1-type (IPR006687),Small GTPase superfamily%2C ARF/SAR type (IPR006689),Small GTPase superfamily%2C ARF type (IPR024156);NIAS_FLcDNA=J033051O05;Oryzabase=21011;Expression=AK073613;TENOR=Os08t0248900-01;KEGG=Os08t0248900-01
Chr08	irgsp1_rep	five_prime_UTR	9081566	9081751	.	+	.	Parent=Os08t0248900-01
Chr08	irgsp1_rep	CDS	9081752	9081854	.	+	0	Parent=Os08t0248900-01
Chr08	irgsp1_rep	CDS	9081949	9081987	.	+	2	Parent=Os08t0248900-01
Chr08	irgsp1_rep	CDS	9082087	9082149	.	+	2	Parent=Os08t0248900-01
Chr08	irgsp1_rep	CDS	9083506	9083524	.	+	2	Parent=Os08t0248900-01
Chr08	irgsp1_rep	CDS	9084570	9084681	.	+	1	Parent=Os08t0248900-01
Chr08	irgsp1_rep	CDS	9085245	9085292	.	+	0	Parent=Os08t0248900-01
Chr08	irgsp1_rep	CDS	9085715	9085845	.	+	0	Parent=Os08t0248900-01
Chr08	irgsp1_rep	CDS	9086119	9086152	.	+	1	Parent=Os08t0248900-01
Chr08	irgsp1_rep	three_prime_UTR	9086153	9086469	.	+	.	Parent=Os08t0248900-01
Chr08	irgsp1_rep	mRNA	9098485	9099878	.	+	.	ID=Os08t0249000-01;Name=Os08t0249000-01;Locus_id=Os08g0249000;Oryzabase Gene Symbol Synonym(s)=OsBBX25%2C OsG%2C OsCCT29%2C BBX25%2C CCT29;Oryzabase Gene Name Synonym(s)=B-box-containing protein 25%2C CCT domain-containing gene 29%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 29%2C CCT domain protein 29%2C CONSTANS-like gene G;Note=Zinc finger%2C B-box domain containing protein.;Transcript_evidence=AK109938 (DDBJ%2C Best hit);ORF_evidence=Q8LGM0 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=Zinc finger%2C B-box (IPR000315),2Fe-2S ferredoxin%2C iron-sulphur binding site (IPR006058);NIAS_FLcDNA=002-154-A03;Oryzabase=11655;Expression=AK109938;TENOR=Os08t0249000-01;KEGG=Os08t0249000-01
Chr08	irgsp1_rep	five_prime_UTR	9098485	9098605	.	+	.	Parent=Os08t0249000-01
Chr08	irgsp1_rep	CDS	9098606	9098946	.	+	0	Parent=Os08t0249000-01
Chr08	irgsp1_rep	CDS	9099316	9099517	.	+	1	Parent=Os08t0249000-01
Chr08	irgsp1_rep	three_prime_UTR	9099518	9099878	.	+	.	Parent=Os08t0249000-01
Chr08	irgsp1_rep	mRNA	9101238	9105746	.	-	.	ID=Os08t0249100-01;Name=Os08t0249100-01;Locus_id=Os08g0249100;CGSNL Gene Symbol=RLCK249;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 249;Oryzabase Gene Symbol Synonym(s)=OsRLCK249;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 249;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK111692 (DDBJ%2C Best hit);ORF_evidence=NP_001147093.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: response to stress (GO:0006950),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),UspA (IPR006016),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023008N13;Oryzabase=18940;Expression=AK111692;TENOR=Os08t0249100-01;KEGG=Os08t0249100-01
Chr08	irgsp1_rep	five_prime_UTR	9105278	9105746	.	-	.	Parent=Os08t0249100-01
Chr08	irgsp1_rep	CDS	9105106	9105277	.	-	0	Parent=Os08t0249100-01
Chr08	irgsp1_rep	CDS	9104849	9104940	.	-	2	Parent=Os08t0249100-01
Chr08	irgsp1_rep	CDS	9103966	9104084	.	-	0	Parent=Os08t0249100-01
Chr08	irgsp1_rep	CDS	9103630	9103751	.	-	1	Parent=Os08t0249100-01
Chr08	irgsp1_rep	CDS	9103147	9103548	.	-	2	Parent=Os08t0249100-01
Chr08	irgsp1_rep	CDS	9102701	9102955	.	-	2	Parent=Os08t0249100-01
Chr08	irgsp1_rep	CDS	9102455	9102612	.	-	2	Parent=Os08t0249100-01
Chr08	irgsp1_rep	CDS	9102259	9102338	.	-	0	Parent=Os08t0249100-01
Chr08	irgsp1_rep	CDS	9101991	9102126	.	-	1	Parent=Os08t0249100-01
Chr08	irgsp1_rep	CDS	9101745	9101894	.	-	0	Parent=Os08t0249100-01
Chr08	irgsp1_rep	CDS	9101505	9101624	.	-	0	Parent=Os08t0249100-01
Chr08	irgsp1_rep	three_prime_UTR	9101238	9101504	.	-	.	Parent=Os08t0249100-01
Chr08	irgsp1_rep	mRNA	9111086	9111844	.	-	.	ID=Os08t0249200-00;Name=Os08t0249200-00;Locus_id=Os08g0249200;Note=Similar to GDU1.;Transcript_evidence=FP100638 (DDBJ);ORF_evidence=NP_001150544.1 (RefSeq);TENOR=Os08t0249200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	9111251	9111844	.	-	0	Parent=Os08t0249200-00
Chr08	irgsp1_rep	three_prime_UTR	9111086	9111250	.	-	.	Parent=Os08t0249200-00
Chr08	irgsp1_rep	mRNA	9123551	9126818	.	-	.	ID=Os08t0249300-00;Name=Os08t0249300-00;Locus_id=Os08g0249300;Note=Hypothetical protein.;Transcript_evidence=AK364235 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0249300-00
Chr08	irgsp1_rep	five_prime_UTR	9126310	9126818	.	-	.	Parent=Os08t0249300-00
Chr08	irgsp1_rep	five_prime_UTR	9126102	9126206	.	-	.	Parent=Os08t0249300-00
Chr08	irgsp1_rep	five_prime_UTR	9125971	9126017	.	-	.	Parent=Os08t0249300-00
Chr08	irgsp1_rep	five_prime_UTR	9125763	9125859	.	-	.	Parent=Os08t0249300-00
Chr08	irgsp1_rep	five_prime_UTR	9125058	9125133	.	-	.	Parent=Os08t0249300-00
Chr08	irgsp1_rep	CDS	9125041	9125057	.	-	0	Parent=Os08t0249300-00
Chr08	irgsp1_rep	CDS	9124814	9124943	.	-	1	Parent=Os08t0249300-00
Chr08	irgsp1_rep	CDS	9124001	9124102	.	-	0	Parent=Os08t0249300-00
Chr08	irgsp1_rep	CDS	9123551	9123913	.	-	0	Parent=Os08t0249300-00
Chr08	irgsp1_rep	mRNA	9126454	9127450	.	+	.	ID=Os08t0249400-01;Name=Os08t0249400-01;Locus_id=Os08g0249400;Note=Hypothetical conserved gene.;Transcript_evidence=AK242237 (DDBJ%2C Best hit);ORF_evidence=B9FZW5 (UniProt);NIAS_FLcDNA=J075178G07;TENOR=Os08t0249400-01;KEGG=Os08t0249400-01
Chr08	irgsp1_rep	five_prime_UTR	9126454	9126906	.	+	.	Parent=Os08t0249400-01
Chr08	irgsp1_rep	CDS	9126907	9127089	.	+	0	Parent=Os08t0249400-01
Chr08	irgsp1_rep	three_prime_UTR	9127090	9127450	.	+	.	Parent=Os08t0249400-01
Chr08	irgsp1_rep	mRNA	9128282	9136609	.	+	.	ID=Os08t0249501-00;Name=Os08t0249501-00;Locus_id=Os08g0249501;Note=Hypothetical protein.;Transcript_evidence=tplb0045d24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0249501-00
Chr08	irgsp1_rep	five_prime_UTR	9128282	9128451	.	+	.	Parent=Os08t0249501-00
Chr08	irgsp1_rep	five_prime_UTR	9128739	9128837	.	+	.	Parent=Os08t0249501-00
Chr08	irgsp1_rep	five_prime_UTR	9128978	9129102	.	+	.	Parent=Os08t0249501-00
Chr08	irgsp1_rep	five_prime_UTR	9129827	9129923	.	+	.	Parent=Os08t0249501-00
Chr08	irgsp1_rep	five_prime_UTR	9130870	9130956	.	+	.	Parent=Os08t0249501-00
Chr08	irgsp1_rep	five_prime_UTR	9131517	9131592	.	+	.	Parent=Os08t0249501-00
Chr08	irgsp1_rep	five_prime_UTR	9132367	9132567	.	+	.	Parent=Os08t0249501-00
Chr08	irgsp1_rep	five_prime_UTR	9132657	9132791	.	+	.	Parent=Os08t0249501-00
Chr08	irgsp1_rep	five_prime_UTR	9133043	9133045	.	+	.	Parent=Os08t0249501-00
Chr08	irgsp1_rep	CDS	9133046	9133139	.	+	0	Parent=Os08t0249501-00
Chr08	irgsp1_rep	CDS	9136259	9136482	.	+	2	Parent=Os08t0249501-00
Chr08	irgsp1_rep	three_prime_UTR	9136483	9136609	.	+	.	Parent=Os08t0249501-00
Chr08	irgsp1_rep	mRNA	9134106	9134700	.	-	.	ID=Os08t0249600-01;Name=Os08t0249600-01;Locus_id=Os08g0249600;CGSNL Gene Symbol=DGK6;CGSNL Gene Name=DIACYLGLYCEROL KINASE 6;Oryzabase Gene Symbol Synonym(s)=OsSTA208%2C OsDGK6;Oryzabase Gene Name Synonym(s)=Diacylglycerol kinase 6;Note=Similar to predicted protein.;Transcript_evidence=AK288115 (DDBJ%2C Best hit);ORF_evidence=XP_002869909.1 (RefSeq);NIAS_FLcDNA=J080036I11;Oryzabase=19308;TENOR=Os08t0249600-01;KEGG=Os08t0249600-01
Chr08	irgsp1_rep	CDS	9134386	9134700	.	-	0	Parent=Os08t0249600-01
Chr08	irgsp1_rep	three_prime_UTR	9134106	9134385	.	-	.	Parent=Os08t0249600-01
Chr08	irgsp1_rep	mRNA	9134388	9135396	.	+	.	ID=Os08t0249675-00;Name=Os08t0249675-00;Locus_id=Os08g0249675;Note=Hypothetical protein.;Transcript_evidence=BT085496 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0249675-00
Chr08	irgsp1_rep	five_prime_UTR	9134388	9134427	.	+	.	Parent=Os08t0249675-00
Chr08	irgsp1_rep	CDS	9134428	9134826	.	+	0	Parent=Os08t0249675-00
Chr08	irgsp1_rep	three_prime_UTR	9134827	9135396	.	+	.	Parent=Os08t0249675-00
Chr08	irgsp1_rep	mRNA	9138740	9145238	.	-	.	ID=Os08t0249750-01;Name=Os08t0249750-01;Locus_id=Os08g0249750;Note=Non-protein coding transcript.;Transcript_evidence=AK289134 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090099B19;TENOR=Os08t0249750-01
Chr08	irgsp1_rep	exon	9138740	9145238	.	-	.	Parent=Os08t0249750-01
Chr08	irgsp1_rep	mRNA	9165968	9167452	.	-	.	ID=Os08t0249900-00;Name=Os08t0249900-00;Locus_id=Os08g0249900;Note=Similar to Gibberellin 20 oxidase 2.;Transcript_evidence=ab initio prediction;ORF_evidence=B6TF99 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);TENOR=Os08t0249900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	9166925	9167452	.	-	0	Parent=Os08t0249900-00
Chr08	irgsp1_rep	CDS	9165968	9166243	.	-	0	Parent=Os08t0249900-00
Chr08	irgsp1_rep	mRNA	9174654	9178792	.	+	.	ID=Os08t0250100-01;Name=Os08t0250100-01;Locus_id=Os08g0250100;Note=Hypothetical conserved gene.;Transcript_evidence=AK288833 (DDBJ%2C Best hit);ORF_evidence=Q6YW13 (UniProt);NIAS_FLcDNA=J090074A01;TENOR=Os08t0250100-01
Chr08	irgsp1_rep	five_prime_UTR	9174654	9178556	.	+	.	Parent=Os08t0250100-01
Chr08	irgsp1_rep	CDS	9178557	9178792	.	+	0	Parent=Os08t0250100-01
Chr08	irgsp1_rep	mRNA	9177347	9180467	.	-	.	ID=Os08t0250200-01;Name=Os08t0250200-01;Locus_id=Os08g0250200;Note=ATPase%2C F1 complex%2C epsilon subunit%2C mitochondrial family protein.;Transcript_evidence=AK243027 (DDBJ%2C Best hit);ORF_evidence=NP_001105595.1 (RefSeq);GO=Biological Process: ATP synthesis coupled proton transport (GO:0015986),Cellular Component: mitochondrial proton-transporting ATP synthase complex%2C catalytic core F(1) (GO:0000275),Molecular Function: hydrogen ion transporting ATP synthase activity%2C rotational mechanism (GO:0046933),Molecular Function: proton-transporting ATPase activity%2C rotational mechanism (GO:0046961);InterPro=ATPase%2C F1 complex%2C epsilon subunit%2C mitochondrial (IPR006721);NIAS_FLcDNA=J100002N17;TENOR=Os08t0250200-01;KEGG=Os08t0250200-01 (EC:3.6.3.14)
Chr08	irgsp1_rep	five_prime_UTR	9180386	9180467	.	-	.	Parent=Os08t0250200-01
Chr08	irgsp1_rep	CDS	9180199	9180385	.	-	0	Parent=Os08t0250200-01
Chr08	irgsp1_rep	CDS	9177598	9177620	.	-	2	Parent=Os08t0250200-01
Chr08	irgsp1_rep	three_prime_UTR	9177347	9177597	.	-	.	Parent=Os08t0250200-01
Chr08	irgsp1_rep	mRNA	9181114	9181517	.	-	.	ID=Os08t0250300-00;Name=Os08t0250300-00;Locus_id=Os08g0250300;Note=Similar to predicted protein.;Transcript_evidence=EU952650 (DDBJ);ORF_evidence=A5X2V3 (UniProt);GO=Biological Process: translational elongation (GO:0006414),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein 60S (IPR001813);TENOR=Os08t0250300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	9181507	9181517	.	-	.	Parent=Os08t0250300-00
Chr08	irgsp1_rep	CDS	9181162	9181506	.	-	0	Parent=Os08t0250300-00
Chr08	irgsp1_rep	three_prime_UTR	9181114	9181161	.	-	.	Parent=Os08t0250300-00
Chr08	irgsp1_rep	mRNA	9191621	9201077	.	+	.	ID=Os08t0250700-01;Name=Os08t0250700-01;Locus_id=Os08g0250700;Note=Thioredoxin domain 2 containing protein.;Transcript_evidence=AK109193 (DDBJ%2C Best hit),AK102125 (DDBJ%2C Best hit);ORF_evidence=NP_179489.1 (RefSeq);GO=Biological Process: cell redox homeostasis (GO:0045454);InterPro=Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766);NIAS_FLcDNA=002-156-B06,J033084O18;TENOR=Os08t0250700-01
Chr08	irgsp1_rep	five_prime_UTR	9191621	9191730	.	+	.	Parent=Os08t0250700-01
Chr08	irgsp1_rep	CDS	9191731	9191754	.	+	0	Parent=Os08t0250700-01
Chr08	irgsp1_rep	CDS	9191855	9192127	.	+	0	Parent=Os08t0250700-01
Chr08	irgsp1_rep	CDS	9200502	9200660	.	+	0	Parent=Os08t0250700-01
Chr08	irgsp1_rep	CDS	9200741	9200917	.	+	0	Parent=Os08t0250700-01
Chr08	irgsp1_rep	three_prime_UTR	9200918	9201077	.	+	.	Parent=Os08t0250700-01
Chr08	irgsp1_rep	mRNA	9224375	9228110	.	-	.	ID=Os08t0250900-01;Name=Os08t0250900-01;Locus_id=Os08g0250900;RAP-DB Gene Symbol Synonym(s)=OsSMAX1%2C SMAX1;RAP-DB Gene Name Synonym(s)=Suppressor of MAX2-1;Note=Homologue of the Arabidopsis thaliana Suppressor of MAX2-1%2C Negative regulation of arbuscular mycorrhizal symbiosis%2C Control of strigolactone biosynthesis;Transcript_evidence=AK120066 (truncated),Inferred from literature;ORF_evidence=Q6Z517;GO=Biological Process: protein metabolic process (GO:0019538);InterPro=Clp%2C N-terminal domain superfamily (IPR036628),P-loop containing nucleoside triphosphate hydrolase (IPR027417),Clp%2C N-terminal (IPR004176);NIAS_FLcDNA=J013002C14 (truncated);Manual Curation=May 29%2C 2020;Literature_PMID=32355217;Expression=AK120066;TENOR=Os08t0250900-01;KEGG=Os08t0250900-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=nucleus (GO:0005634)
Chr08	irgsp1_rep	CDS	9226849	9228110	.	-	0	Parent=Os08t0250900-01
Chr08	irgsp1_rep	CDS	9226302	9226575	.	-	1	Parent=Os08t0250900-01
Chr08	irgsp1_rep	CDS	9224614	9226203	.	-	0	Parent=Os08t0250900-01
Chr08	irgsp1_rep	three_prime_UTR	9224375	9224613	.	-	.	Parent=Os08t0250900-01
Chr08	irgsp1_rep	mRNA	9232201	9232818	.	+	.	ID=Os08t0251000-00;Name=Os08t0251000-00;Locus_id=Os08g0251000;Note=Non-protein coding transcript.;Transcript_evidence=CT836018 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os08t0251000-00
Chr08	irgsp1_rep	exon	9232201	9232271	.	+	.	Parent=Os08t0251000-00
Chr08	irgsp1_rep	exon	9232281	9232336	.	+	.	Parent=Os08t0251000-00
Chr08	irgsp1_rep	exon	9232343	9232818	.	+	.	Parent=Os08t0251000-00
Chr08	irgsp1_rep	mRNA	9327023	9327309	.	-	.	ID=Os08t0252050-00;Name=Os08t0252050-00;Locus_id=Os08g0252050;Note=Non-protein coding transcript.;Transcript_evidence=EU948750 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0252050-00
Chr08	irgsp1_rep	exon	9327023	9327309	.	-	.	Parent=Os08t0252050-00
Chr08	irgsp1_rep	mRNA	9339279	9343379	.	+	.	ID=Os08t0253150-01;Name=Os08t0253150-01;Locus_id=Os08g0253150;Note=Conserved hypothetical protein.;Transcript_evidence=AK288934 (DDBJ%2C Best hit);ORF_evidence=Q2QWD9 (UniProt);NIAS_FLcDNA=J090082I21;TENOR=Os08t0253150-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	9339279	9341730	.	+	.	Parent=Os08t0253150-01
Chr08	irgsp1_rep	CDS	9341731	9341964	.	+	0	Parent=Os08t0253150-01
Chr08	irgsp1_rep	three_prime_UTR	9341965	9343379	.	+	.	Parent=Os08t0253150-01
Chr08	irgsp1_rep	mRNA	9384129	9387669	.	+	.	ID=Os08t0253800-01;Name=Os08t0253800-01;Locus_id=Os08g0253800;CGSNL Gene Symbol=CSLC3;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE C3;Oryzabase Gene Symbol Synonym(s)=OsCslC3%2C OsCSLC3;Note=Similar to Cellulose synthase-like family C3 protein (Fragment).;Transcript_evidence=AK108045 (DDBJ%2C Best hit);ORF_evidence=C8CBX5 (UniProt);InterPro=Glycosyl transferase%2C family 2 (IPR001173);NIAS_FLcDNA=002-137-E05;Oryzabase=13890;TENOR=Os08t0253800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	9384129	9384137	.	+	.	Parent=Os08t0253800-01
Chr08	irgsp1_rep	CDS	9384138	9384161	.	+	0	Parent=Os08t0253800-01
Chr08	irgsp1_rep	CDS	9384408	9384716	.	+	0	Parent=Os08t0253800-01
Chr08	irgsp1_rep	CDS	9385853	9386143	.	+	0	Parent=Os08t0253800-01
Chr08	irgsp1_rep	CDS	9386403	9386516	.	+	0	Parent=Os08t0253800-01
Chr08	irgsp1_rep	CDS	9386623	9387324	.	+	0	Parent=Os08t0253800-01
Chr08	irgsp1_rep	three_prime_UTR	9387325	9387669	.	+	.	Parent=Os08t0253800-01
Chr08	irgsp1_rep	mRNA	9395073	9397980	.	+	.	ID=Os08t0254200-01;Name=Os08t0254200-01;Locus_id=Os08g0254200;Note=Conserved hypothetical protein.;Transcript_evidence=AK066186 (DDBJ%2C Best hit);ORF_evidence=NP_001066626.1 (RefSeq);NIAS_FLcDNA=J013054H22;Expression=AK066186;TENOR=Os08t0254200-01;KEGG=Os08t0254200-01
Chr08	irgsp1_rep	five_prime_UTR	9395073	9396033	.	+	.	Parent=Os08t0254200-01
Chr08	irgsp1_rep	CDS	9396034	9396174	.	+	0	Parent=Os08t0254200-01
Chr08	irgsp1_rep	CDS	9396302	9396412	.	+	0	Parent=Os08t0254200-01
Chr08	irgsp1_rep	three_prime_UTR	9396413	9397420	.	+	.	Parent=Os08t0254200-01
Chr08	irgsp1_rep	three_prime_UTR	9397701	9397980	.	+	.	Parent=Os08t0254200-01
Chr08	irgsp1_rep	mRNA	9399521	9402233	.	+	.	ID=Os08t0254300-00;Name=Os08t0254300-00;Locus_id=Os08g0254300;Note=Similar to OSIGBa0112M24.2 protein.;Transcript_evidence=EU973663 (DDBJ);ORF_evidence=Q01I55 (UniProt);InterPro=Nodulin-like (IPR010658),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);TENOR=Os08t0254300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	9399521	9399944	.	+	0	Parent=Os08t0254300-00
Chr08	irgsp1_rep	CDS	9400587	9401421	.	+	2	Parent=Os08t0254300-00
Chr08	irgsp1_rep	CDS	9401753	9402233	.	+	1	Parent=Os08t0254300-00
Chr08	irgsp1_rep	mRNA	9405688	9411169	.	+	.	ID=Os08t0254500-01;Name=Os08t0254500-01;Locus_id=Os08g0254500;Note=Similar to Preprotein translocase secY subunit%2C chloroplast precursor (CpSecY).;Transcript_evidence=AK072225 (DDBJ%2C Best hit);ORF_evidence=Q6ZG25 (UniProt);GO=Biological Process: protein transport (GO:0015031),Cellular Component: membrane (GO:0016020),Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450);InterPro=SecY protein (IPR002208),SecY subunit domain (IPR023201);NIAS_FLcDNA=J013165J10;Expression=AK072225;TENOR=Os08t0254500-01;KEGG=Os08t0254500-01
Chr08	irgsp1_rep	five_prime_UTR	9405688	9405708	.	+	.	Parent=Os08t0254500-01
Chr08	irgsp1_rep	CDS	9405709	9405911	.	+	0	Parent=Os08t0254500-01
Chr08	irgsp1_rep	CDS	9406026	9406198	.	+	1	Parent=Os08t0254500-01
Chr08	irgsp1_rep	CDS	9407088	9407473	.	+	2	Parent=Os08t0254500-01
Chr08	irgsp1_rep	CDS	9408134	9408433	.	+	0	Parent=Os08t0254500-01
Chr08	irgsp1_rep	CDS	9408520	9408609	.	+	0	Parent=Os08t0254500-01
Chr08	irgsp1_rep	CDS	9409556	9409679	.	+	0	Parent=Os08t0254500-01
Chr08	irgsp1_rep	CDS	9409795	9409958	.	+	2	Parent=Os08t0254500-01
Chr08	irgsp1_rep	CDS	9410915	9411145	.	+	0	Parent=Os08t0254500-01
Chr08	irgsp1_rep	three_prime_UTR	9411146	9411169	.	+	.	Parent=Os08t0254500-01
Chr08	irgsp1_rep	mRNA	9405709	9414700	.	+	.	ID=Os08t0254500-02;Name=Os08t0254500-02;Locus_id=Os08g0254500;Note=Similar to Preprotein translocase secY subunit%2C chloroplast precursor (CpSecY).;Transcript_evidence=AK121121 (DDBJ%2C Best hit);ORF_evidence=Q6ZG25 (UniProt);GO=Biological Process: protein transport (GO:0015031),Cellular Component: membrane (GO:0016020),Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450);InterPro=SecY protein (IPR002208),SecY subunit domain (IPR023201);NIAS_FLcDNA=J023074F12;Expression=AK121121;TENOR=Os08t0254500-02;KEGG=Os08t0254500-02
Chr08	irgsp1_rep	CDS	9405709	9405911	.	+	0	Parent=Os08t0254500-02
Chr08	irgsp1_rep	CDS	9406026	9406198	.	+	1	Parent=Os08t0254500-02
Chr08	irgsp1_rep	CDS	9407088	9407473	.	+	2	Parent=Os08t0254500-02
Chr08	irgsp1_rep	CDS	9408134	9408433	.	+	0	Parent=Os08t0254500-02
Chr08	irgsp1_rep	CDS	9408520	9408609	.	+	0	Parent=Os08t0254500-02
Chr08	irgsp1_rep	CDS	9409556	9409679	.	+	0	Parent=Os08t0254500-02
Chr08	irgsp1_rep	CDS	9409795	9409958	.	+	2	Parent=Os08t0254500-02
Chr08	irgsp1_rep	CDS	9410915	9411145	.	+	0	Parent=Os08t0254500-02
Chr08	irgsp1_rep	three_prime_UTR	9411146	9412152	.	+	.	Parent=Os08t0254500-02
Chr08	irgsp1_rep	three_prime_UTR	9412527	9412580	.	+	.	Parent=Os08t0254500-02
Chr08	irgsp1_rep	three_prime_UTR	9414213	9414700	.	+	.	Parent=Os08t0254500-02
Chr08	irgsp1_rep	mRNA	9409810	9411237	.	+	.	ID=Os08t0254500-03;Name=Os08t0254500-03;Locus_id=Os08g0254500;Note=Similar to Preprotein translocase subunit secY%2C chloroplastic.;Transcript_evidence=AK104050 (DDBJ%2C Best hit);ORF_evidence=Q6ZG25 (UniProt);GO=Biological Process: protein transport (GO:0015031),Cellular Component: membrane (GO:0016020),Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450);InterPro=SecY protein (IPR002208),SecY subunit domain (IPR023201);NIAS_FLcDNA=001-023-A02;Expression=AK104050;TENOR=Os08t0254500-03;KEGG=Os08t0254500-03
Chr08	irgsp1_rep	five_prime_UTR	9409810	9409811	.	+	.	Parent=Os08t0254500-03
Chr08	irgsp1_rep	CDS	9409812	9409958	.	+	0	Parent=Os08t0254500-03
Chr08	irgsp1_rep	CDS	9410915	9411145	.	+	0	Parent=Os08t0254500-03
Chr08	irgsp1_rep	three_prime_UTR	9411146	9411237	.	+	.	Parent=Os08t0254500-03
Chr08	irgsp1_rep	mRNA	9411335	9416401	.	-	.	ID=Os08t0254600-01;Name=Os08t0254600-01;Locus_id=Os08g0254600;Note=Similar to cyclic nucleotide-gated ion channel 14.;Transcript_evidence=AK243221 (DDBJ%2C Best hit);ORF_evidence=B6UFI6 (UniProt);InterPro=Cyclic nucleotide-binding domain (IPR000595),RmlC-like jelly roll fold (IPR014710),Cyclic nucleotide-binding-like (IPR018490);NIAS_FLcDNA=J100043L21;TENOR=Os08t0254600-01;KEGG=Os08t0254600-01
Chr08	irgsp1_rep	five_prime_UTR	9416059	9416401	.	-	.	Parent=Os08t0254600-01
Chr08	irgsp1_rep	CDS	9416054	9416058	.	-	0	Parent=Os08t0254600-01
Chr08	irgsp1_rep	CDS	9414139	9414628	.	-	1	Parent=Os08t0254600-01
Chr08	irgsp1_rep	CDS	9413837	9414040	.	-	0	Parent=Os08t0254600-01
Chr08	irgsp1_rep	CDS	9413192	9413505	.	-	0	Parent=Os08t0254600-01
Chr08	irgsp1_rep	CDS	9412876	9412987	.	-	1	Parent=Os08t0254600-01
Chr08	irgsp1_rep	CDS	9412557	9412793	.	-	0	Parent=Os08t0254600-01
Chr08	irgsp1_rep	CDS	9411699	9412385	.	-	0	Parent=Os08t0254600-01
Chr08	irgsp1_rep	three_prime_UTR	9411335	9411698	.	-	.	Parent=Os08t0254600-01
Chr08	irgsp1_rep	mRNA	9424760	9428473	.	+	.	ID=Os08t0254900-01;Name=Os08t0254900-01;Locus_id=Os08g0254900;Note=Similar to Glutamyl-tRNA reductase binding protein.;Transcript_evidence=AK120666 (DDBJ%2C Best hit);ORF_evidence=E9N733 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FMN-binding split barrel-related (IPR009002),FMN-binding split barrel (IPR012349),Domain of unknown function DUF2470 (IPR019595);NIAS_FLcDNA=J013159O15;Expression=AK120666;TENOR=Os08t0254900-01;KEGG=Os08t0254900-01
Chr08	irgsp1_rep	five_prime_UTR	9424760	9424768	.	+	.	Parent=Os08t0254900-01
Chr08	irgsp1_rep	CDS	9424769	9425161	.	+	0	Parent=Os08t0254900-01
Chr08	irgsp1_rep	CDS	9425717	9425797	.	+	0	Parent=Os08t0254900-01
Chr08	irgsp1_rep	CDS	9425958	9426062	.	+	0	Parent=Os08t0254900-01
Chr08	irgsp1_rep	CDS	9427227	9427376	.	+	0	Parent=Os08t0254900-01
Chr08	irgsp1_rep	CDS	9427828	9428052	.	+	0	Parent=Os08t0254900-01
Chr08	irgsp1_rep	three_prime_UTR	9428053	9428473	.	+	.	Parent=Os08t0254900-01
Chr08	irgsp1_rep	mRNA	9428025	9428363	.	+	.	ID=Os08t0254900-02;Name=Os08t0254900-02;Locus_id=Os08g0254900;Note=Non-protein coding transcript.;Transcript_evidence=AK058255 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-012-D02;TENOR=Os08t0254900-02
Chr08	irgsp1_rep	exon	9428025	9428363	.	+	.	Parent=Os08t0254900-02
Chr08	irgsp1_rep	mRNA	9439937	9441162	.	-	.	ID=Os08t0255020-00;Name=Os08t0255020-00;Locus_id=Os08g0255020;Note=Conserved hypothetical protein.;Transcript_evidence=AK288063 (DDBJ%2C Secondary hit);ORF_evidence=Q7EXZ7 (UniProt);TENOR=Os08t0255020-00
Chr08	irgsp1_rep	five_prime_UTR	9440932	9441162	.	-	.	Parent=Os08t0255020-00
Chr08	irgsp1_rep	CDS	9440629	9440931	.	-	0	Parent=Os08t0255020-00
Chr08	irgsp1_rep	three_prime_UTR	9440510	9440628	.	-	.	Parent=Os08t0255020-00
Chr08	irgsp1_rep	three_prime_UTR	9439937	9440500	.	-	.	Parent=Os08t0255020-00
Chr08	irgsp1_rep	mRNA	9440105	9441435	.	+	.	ID=Os08t0255140-00;Name=Os08t0255140-00;Locus_id=Os08g0255140;Note=Hypothetical gene.;Transcript_evidence=AK060506 (DDBJ%2C Secondary hit);ORF_evidence=Q6ZG21 (UniProt);TENOR=Os08t0255140-00
Chr08	irgsp1_rep	five_prime_UTR	9440105	9440500	.	+	.	Parent=Os08t0255140-00
Chr08	irgsp1_rep	five_prime_UTR	9440510	9440519	.	+	.	Parent=Os08t0255140-00
Chr08	irgsp1_rep	CDS	9440520	9440933	.	+	0	Parent=Os08t0255140-00
Chr08	irgsp1_rep	three_prime_UTR	9440934	9441435	.	+	.	Parent=Os08t0255140-00
Chr08	irgsp1_rep	mRNA	9477453	9482623	.	-	.	ID=Os08t0255500-00;Name=Os08t0255500-00;Locus_id=Os08g0255500;Note=Similar to BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1.;Transcript_evidence=AK065193 (DDBJ%2C Secondary hit);ORF_evidence=B6SW87 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);Expression=AK065193;TENOR=Os08t0255500-00;KEGG=Os08t0255500-00
Chr08	irgsp1_rep	five_prime_UTR	9482438	9482623	.	-	.	Parent=Os08t0255500-00
Chr08	irgsp1_rep	five_prime_UTR	9482253	9482418	.	-	.	Parent=Os08t0255500-00
Chr08	irgsp1_rep	five_prime_UTR	9481896	9482159	.	-	.	Parent=Os08t0255500-00
Chr08	irgsp1_rep	five_prime_UTR	9481067	9481209	.	-	.	Parent=Os08t0255500-00
Chr08	irgsp1_rep	CDS	9480973	9481066	.	-	0	Parent=Os08t0255500-00
Chr08	irgsp1_rep	CDS	9480744	9480879	.	-	2	Parent=Os08t0255500-00
Chr08	irgsp1_rep	CDS	9480574	9480613	.	-	1	Parent=Os08t0255500-00
Chr08	irgsp1_rep	CDS	9480305	9480463	.	-	0	Parent=Os08t0255500-00
Chr08	irgsp1_rep	three_prime_UTR	9480280	9480304	.	-	.	Parent=Os08t0255500-00
Chr08	irgsp1_rep	three_prime_UTR	9478449	9480270	.	-	.	Parent=Os08t0255500-00
Chr08	irgsp1_rep	three_prime_UTR	9478191	9478319	.	-	.	Parent=Os08t0255500-00
Chr08	irgsp1_rep	three_prime_UTR	9477453	9477763	.	-	.	Parent=Os08t0255500-00
Chr08	irgsp1_rep	mRNA	9507285	9508548	.	-	.	ID=Os08t0256000-01;Name=Os08t0256000-01;Locus_id=Os08g0256000;Note=Conserved hypothetical protein.;Transcript_evidence=AK105511 (DDBJ%2C Best hit);ORF_evidence=A2YT28 (UniProt);NIAS_FLcDNA=001-127-E06;Expression=AK105511;TENOR=Os08t0256000-01;KEGG=Os08t0256000-01
Chr08	irgsp1_rep	five_prime_UTR	9508450	9508548	.	-	.	Parent=Os08t0256000-01
Chr08	irgsp1_rep	CDS	9507475	9508449	.	-	0	Parent=Os08t0256000-01
Chr08	irgsp1_rep	three_prime_UTR	9507285	9507474	.	-	.	Parent=Os08t0256000-01
Chr08	irgsp1_rep	mRNA	9510326	9510824	.	+	.	ID=Os08t0256100-00;Name=Os08t0256100-00;Locus_id=Os08g0256100;Note=Similar to OSIGBa0157K09-H0214G12.13 protein.;Transcript_evidence=EU952028 (DDBJ);ORF_evidence=Q01HE4 (UniProt);TENOR=Os08t0256100-00;KEGG=Os08t0256100-00
Chr08	irgsp1_rep	five_prime_UTR	9510326	9510339	.	+	.	Parent=Os08t0256100-00
Chr08	irgsp1_rep	CDS	9510340	9510615	.	+	0	Parent=Os08t0256100-00
Chr08	irgsp1_rep	three_prime_UTR	9510616	9510824	.	+	.	Parent=Os08t0256100-00
Chr08	irgsp1_rep	mRNA	9517361	9522020	.	-	.	ID=Os08t0256300-01;Name=Os08t0256300-01;Locus_id=Os08g0256300;Note=Similar to OSIGBa0135A16.2 protein.;Transcript_evidence=AK240837 (DDBJ%2C Best hit);ORF_evidence=Q01LV6 (UniProt);NIAS_FLcDNA=J065016C03;TENOR=Os08t0256300-01
Chr08	irgsp1_rep	five_prime_UTR	9521237	9522020	.	-	.	Parent=Os08t0256300-01
Chr08	irgsp1_rep	five_prime_UTR	9521032	9521122	.	-	.	Parent=Os08t0256300-01
Chr08	irgsp1_rep	five_prime_UTR	9518485	9518718	.	-	.	Parent=Os08t0256300-01
Chr08	irgsp1_rep	CDS	9518457	9518484	.	-	0	Parent=Os08t0256300-01
Chr08	irgsp1_rep	CDS	9518329	9518387	.	-	2	Parent=Os08t0256300-01
Chr08	irgsp1_rep	CDS	9517492	9518244	.	-	0	Parent=Os08t0256300-01
Chr08	irgsp1_rep	three_prime_UTR	9517361	9517491	.	-	.	Parent=Os08t0256300-01
Chr08	irgsp1_rep	mRNA	9538125	9539756	.	+	.	ID=Os08t0256700-01;Name=Os08t0256700-01;Locus_id=Os08g0256700;Note=Conserved hypothetical protein.;Transcript_evidence=AK108811 (DDBJ%2C Best hit);ORF_evidence=B8B8T0 (UniProt);NIAS_FLcDNA=002-151-E01;Expression=AK108811;TENOR=Os08t0256700-01;KEGG=Os08t0256700-01
Chr08	irgsp1_rep	five_prime_UTR	9538125	9538289	.	+	.	Parent=Os08t0256700-01
Chr08	irgsp1_rep	five_prime_UTR	9538724	9538765	.	+	.	Parent=Os08t0256700-01
Chr08	irgsp1_rep	CDS	9538766	9539545	.	+	0	Parent=Os08t0256700-01
Chr08	irgsp1_rep	three_prime_UTR	9539546	9539756	.	+	.	Parent=Os08t0256700-01
Chr08	irgsp1_rep	mRNA	9545388	9548984	.	+	.	ID=Os08t0256750-01;Name=Os08t0256750-01;Locus_id=Os08g0256750;Note=Hypothetical gene.;Transcript_evidence=AK289132 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J090098P21;TENOR=Os08t0256750-01;KEGG=Os08t0256750-01
Chr08	irgsp1_rep	five_prime_UTR	9545388	9547400	.	+	.	Parent=Os08t0256750-01
Chr08	irgsp1_rep	CDS	9547401	9547610	.	+	0	Parent=Os08t0256750-01
Chr08	irgsp1_rep	three_prime_UTR	9547611	9548984	.	+	.	Parent=Os08t0256750-01
Chr08	irgsp1_rep	mRNA	9628620	9632710	.	-	.	ID=Os08t0258200-01;Name=Os08t0258200-01;Locus_id=Os08g0258200;Oryzabase Gene Symbol Synonym(s)=XBOS35;Note=Ankyrin domain containing protein.;Transcript_evidence=AK067289 (DDBJ%2C Best hit);ORF_evidence=B6U0P6 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Ankyrin repeat (IPR002110),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J013103K22;Oryzabase=11149;Expression=AK067289;TENOR=Os08t0258200-01;KEGG=Os08t0258200-01
Chr08	irgsp1_rep	five_prime_UTR	9632619	9632710	.	-	.	Parent=Os08t0258200-01
Chr08	irgsp1_rep	five_prime_UTR	9632535	9632545	.	-	.	Parent=Os08t0258200-01
Chr08	irgsp1_rep	CDS	9632340	9632534	.	-	0	Parent=Os08t0258200-01
Chr08	irgsp1_rep	CDS	9632163	9632222	.	-	0	Parent=Os08t0258200-01
Chr08	irgsp1_rep	CDS	9631627	9631698	.	-	0	Parent=Os08t0258200-01
Chr08	irgsp1_rep	CDS	9631364	9631539	.	-	0	Parent=Os08t0258200-01
Chr08	irgsp1_rep	CDS	9631123	9631283	.	-	1	Parent=Os08t0258200-01
Chr08	irgsp1_rep	CDS	9630924	9630982	.	-	2	Parent=Os08t0258200-01
Chr08	irgsp1_rep	CDS	9630803	9630849	.	-	0	Parent=Os08t0258200-01
Chr08	irgsp1_rep	CDS	9630205	9630345	.	-	1	Parent=Os08t0258200-01
Chr08	irgsp1_rep	CDS	9629354	9629445	.	-	1	Parent=Os08t0258200-01
Chr08	irgsp1_rep	CDS	9628787	9629271	.	-	2	Parent=Os08t0258200-01
Chr08	irgsp1_rep	three_prime_UTR	9628620	9628786	.	-	.	Parent=Os08t0258200-01
Chr08	irgsp1_rep	mRNA	9628599	9632710	.	-	.	ID=Os08t0258200-02;Name=Os08t0258200-02;Locus_id=Os08g0258200;Oryzabase Gene Symbol Synonym(s)=XBOS35;Note=Ankyrin domain containing protein.;Transcript_evidence=AK120159 (DDBJ%2C Best hit);ORF_evidence=B6U0P6 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Ankyrin repeat (IPR002110),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J013030H09;Oryzabase=11149;Expression=AK120159;TENOR=Os08t0258200-02;KEGG=Os08t0258200-02
Chr08	irgsp1_rep	five_prime_UTR	9632535	9632710	.	-	.	Parent=Os08t0258200-02
Chr08	irgsp1_rep	CDS	9632340	9632534	.	-	0	Parent=Os08t0258200-02
Chr08	irgsp1_rep	CDS	9632163	9632222	.	-	0	Parent=Os08t0258200-02
Chr08	irgsp1_rep	CDS	9631627	9631698	.	-	0	Parent=Os08t0258200-02
Chr08	irgsp1_rep	CDS	9631364	9631539	.	-	0	Parent=Os08t0258200-02
Chr08	irgsp1_rep	CDS	9631123	9631283	.	-	1	Parent=Os08t0258200-02
Chr08	irgsp1_rep	CDS	9630924	9630982	.	-	2	Parent=Os08t0258200-02
Chr08	irgsp1_rep	CDS	9630803	9630849	.	-	0	Parent=Os08t0258200-02
Chr08	irgsp1_rep	CDS	9630205	9630345	.	-	1	Parent=Os08t0258200-02
Chr08	irgsp1_rep	CDS	9629354	9629445	.	-	1	Parent=Os08t0258200-02
Chr08	irgsp1_rep	CDS	9628787	9629271	.	-	2	Parent=Os08t0258200-02
Chr08	irgsp1_rep	three_prime_UTR	9628599	9628786	.	-	.	Parent=Os08t0258200-02
Chr08	irgsp1_rep	mRNA	9646326	9646835	.	+	.	ID=Os08t0258600-00;Name=Os08t0258600-00;Locus_id=Os08g0258600;Note=Hypothetical gene.;Transcript_evidence=CT835899 (DDBJ%2C Secondary hit);ORF_evidence=NP_001176066.1 (RefSeq);TENOR=Os08t0258600-00
Chr08	irgsp1_rep	five_prime_UTR	9646326	9646342	.	+	.	Parent=Os08t0258600-00
Chr08	irgsp1_rep	CDS	9646343	9646498	.	+	0	Parent=Os08t0258600-00
Chr08	irgsp1_rep	CDS	9646511	9646678	.	+	0	Parent=Os08t0258600-00
Chr08	irgsp1_rep	CDS	9646762	9646835	.	+	0	Parent=Os08t0258600-00
Chr08	irgsp1_rep	mRNA	9692697	9697289	.	+	.	ID=Os08t0259100-01;Name=Os08t0259100-01;Locus_id=Os08g0259100;Note=Conserved hypothetical protein.;Transcript_evidence=AK064275 (DDBJ%2C Best hit);ORF_evidence=Q0P168 (UniProt);NIAS_FLcDNA=002-105-F02;Expression=AK064275;TENOR=Os08t0259100-01;KEGG=Os08t0259100-01
Chr08	irgsp1_rep	five_prime_UTR	9692697	9693466	.	+	.	Parent=Os08t0259100-01
Chr08	irgsp1_rep	five_prime_UTR	9693555	9693624	.	+	.	Parent=Os08t0259100-01
Chr08	irgsp1_rep	five_prime_UTR	9694486	9694564	.	+	.	Parent=Os08t0259100-01
Chr08	irgsp1_rep	five_prime_UTR	9695730	9695817	.	+	.	Parent=Os08t0259100-01
Chr08	irgsp1_rep	five_prime_UTR	9695899	9696072	.	+	.	Parent=Os08t0259100-01
Chr08	irgsp1_rep	five_prime_UTR	9696166	9696460	.	+	.	Parent=Os08t0259100-01
Chr08	irgsp1_rep	five_prime_UTR	9696527	9696551	.	+	.	Parent=Os08t0259100-01
Chr08	irgsp1_rep	CDS	9696552	9696625	.	+	0	Parent=Os08t0259100-01
Chr08	irgsp1_rep	CDS	9696693	9697068	.	+	1	Parent=Os08t0259100-01
Chr08	irgsp1_rep	three_prime_UTR	9697069	9697289	.	+	.	Parent=Os08t0259100-01
Chr08	irgsp1_rep	mRNA	9757448	9760662	.	+	.	ID=Os08t0260000-01;Name=Os08t0260000-01;Locus_id=Os08g0260000;Note=Similar to N-acetyltransferase.;Transcript_evidence=AK243393 (DDBJ%2C Best hit);ORF_evidence=NP_001148546.1 (RefSeq);NIAS_FLcDNA=J100064C22;TENOR=Os08t0260000-01;KEGG=Os08t0260000-01
Chr08	irgsp1_rep	five_prime_UTR	9757448	9757540	.	+	.	Parent=Os08t0260000-01
Chr08	irgsp1_rep	CDS	9757541	9757873	.	+	0	Parent=Os08t0260000-01
Chr08	irgsp1_rep	CDS	9758525	9758680	.	+	0	Parent=Os08t0260000-01
Chr08	irgsp1_rep	CDS	9759488	9759583	.	+	0	Parent=Os08t0260000-01
Chr08	irgsp1_rep	CDS	9760370	9760375	.	+	0	Parent=Os08t0260000-01
Chr08	irgsp1_rep	three_prime_UTR	9760376	9760662	.	+	.	Parent=Os08t0260000-01
Chr08	irgsp1_rep	mRNA	9773361	9773595	.	-	.	ID=Os08t0260200-00;Name=Os08t0260200-00;Locus_id=Os08g0260200;Note=Non-protein coding transcript.;Transcript_evidence=AM055639 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0260200-00
Chr08	irgsp1_rep	exon	9773361	9773595	.	-	.	Parent=Os08t0260200-00
Chr08	irgsp1_rep	mRNA	9779953	9782015	.	+	.	ID=Os08t0260400-00;Name=Os08t0260400-00;Locus_id=Os08g0260400;Oryzabase Gene Symbol Synonym(s)=OsbHLH171%2C bHLH171;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 171;Note=Conserved hypothetical protein.;Transcript_evidence=EU973296 (DDBJ);ORF_evidence=B8B8Y1 (UniProt);Oryzabase=22846;TENOR=Os08t0260400-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	9779953	9780046	.	+	.	Parent=Os08t0260400-00
Chr08	irgsp1_rep	CDS	9780047	9780687	.	+	0	Parent=Os08t0260400-00
Chr08	irgsp1_rep	CDS	9781612	9781618	.	+	1	Parent=Os08t0260400-00
Chr08	irgsp1_rep	three_prime_UTR	9781619	9782015	.	+	.	Parent=Os08t0260400-00
Chr08	irgsp1_rep	mRNA	9784270	9786922	.	-	.	ID=Os08t0260600-01;Name=Os08t0260600-01;Locus_id=Os08g0260600;CGSNL Gene Symbol=TET11;CGSNL Gene Name=TETRASPANIN 11;Oryzabase Gene Symbol Synonym(s)=OsTET11;Oryzabase Gene Name Synonym(s)=tetraspanin 11;Note=Tetraspanin domain containing protein.;Transcript_evidence=AK108529 (DDBJ%2C Best hit);ORF_evidence=B3TLS7 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Tetraspanin (IPR018499);NIAS_FLcDNA=002-144-B12;Oryzabase=20316;Expression=AK108529;TENOR=Os08t0260600-01;KEGG=Os08t0260600-01
Chr08	irgsp1_rep	five_prime_UTR	9786911	9786922	.	-	.	Parent=Os08t0260600-01
Chr08	irgsp1_rep	CDS	9786395	9786910	.	-	0	Parent=Os08t0260600-01
Chr08	irgsp1_rep	CDS	9784526	9784831	.	-	0	Parent=Os08t0260600-01
Chr08	irgsp1_rep	three_prime_UTR	9784270	9784525	.	-	.	Parent=Os08t0260600-01
Chr08	irgsp1_rep	mRNA	9795807	9798597	.	-	.	ID=Os08t0260800-00;Name=Os08t0260800-00;Locus_id=Os08g0260800;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=AK334605 (DDBJ);ORF_evidence=Q7XH20 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os08t0260800-00;KEGG=Os08t0260800-00
Chr08	irgsp1_rep	five_prime_UTR	9798582	9798597	.	-	.	Parent=Os08t0260800-00
Chr08	irgsp1_rep	CDS	9797169	9798581	.	-	0	Parent=Os08t0260800-00
Chr08	irgsp1_rep	three_prime_UTR	9795807	9797168	.	-	.	Parent=Os08t0260800-00
Chr08	irgsp1_rep	mRNA	9824627	9828471	.	+	.	ID=Os08t0261000-01;Name=Os08t0261000-01;Locus_id=Os08g0261000;Note=NB-ARC domain containing protein.;Transcript_evidence=AK100590 (DDBJ%2C Best hit);ORF_evidence=Q5BMB3 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J023106I20;Expression=AK100590;TENOR=Os08t0261000-01;KEGG=Os08t0261000-01
Chr08	irgsp1_rep	five_prime_UTR	9824627	9824924	.	+	.	Parent=Os08t0261000-01
Chr08	irgsp1_rep	five_prime_UTR	9825204	9825246	.	+	.	Parent=Os08t0261000-01
Chr08	irgsp1_rep	CDS	9825247	9825371	.	+	0	Parent=Os08t0261000-01
Chr08	irgsp1_rep	CDS	9825720	9827934	.	+	1	Parent=Os08t0261000-01
Chr08	irgsp1_rep	three_prime_UTR	9827935	9828471	.	+	.	Parent=Os08t0261000-01
Chr08	irgsp1_rep	mRNA	9831006	9834047	.	-	.	ID=Os08t0261100-01;Name=Os08t0261100-01;Locus_id=Os08g0261100;Note=Protein of unknown function DUF1218 family protein.;Transcript_evidence=AK068711 (DDBJ%2C Best hit);ORF_evidence=B6THG5 (UniProt);InterPro=Protein of unknown function DUF1218 (IPR009606);NIAS_FLcDNA=J013160C06;Expression=AK068711;TENOR=Os08t0261100-01;KEGG=Os08t0261100-01
Chr08	irgsp1_rep	five_prime_UTR	9833944	9834047	.	-	.	Parent=Os08t0261100-01
Chr08	irgsp1_rep	CDS	9833830	9833943	.	-	0	Parent=Os08t0261100-01
Chr08	irgsp1_rep	CDS	9833549	9833745	.	-	0	Parent=Os08t0261100-01
Chr08	irgsp1_rep	CDS	9831343	9831631	.	-	1	Parent=Os08t0261100-01
Chr08	irgsp1_rep	three_prime_UTR	9831006	9831342	.	-	.	Parent=Os08t0261100-01
Chr08	irgsp1_rep	mRNA	9921522	9923218	.	+	.	ID=Os08t0262500-01;Name=Os08t0262500-01;Locus_id=Os08g0262500;CGSNL Gene Symbol=CYP96B8;CGSNL Gene Name=P-450 96B8;Oryzabase Gene Symbol Synonym(s)=OsCYP96B8;Oryzabase Gene Name Synonym(s)=CytoChrome P450 96B8;Note=CytoChrome P450 family protein.;Transcript_evidence=AK060990 (DDBJ%2C Best hit),AK104291 (DDBJ%2C Best hit);ORF_evidence=A2Z578 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=006-203-C11,001-007-F05;Oryzabase=19314;TENOR=Os08t0262500-01
Chr08	irgsp1_rep	five_prime_UTR	9921522	9921528	.	+	.	Parent=Os08t0262500-01
Chr08	irgsp1_rep	CDS	9921529	9923091	.	+	0	Parent=Os08t0262500-01
Chr08	irgsp1_rep	three_prime_UTR	9923092	9923218	.	+	.	Parent=Os08t0262500-01
Chr08	irgsp1_rep	mRNA	9958741	9960475	.	-	.	ID=Os08t0263000-00;Name=Os08t0263000-00;Locus_id=Os08g0263000;Note=Similar to CytoChrome P450-like protein (CYP86B1).;Transcript_evidence=AK248667 (DDBJ);ORF_evidence=Q10RZ9 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);TENOR=Os08t0263000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	9958973	9960475	.	-	0	Parent=Os08t0263000-00
Chr08	irgsp1_rep	three_prime_UTR	9958741	9958972	.	-	.	Parent=Os08t0263000-00
Chr08	irgsp1_rep	mRNA	9964987	9965740	.	+	.	ID=Os08t0263100-01;Name=Os08t0263100-01;Locus_id=Os08g0263100;Note=Conserved hypothetical protein.;Transcript_evidence=AK121216 (DDBJ%2C Best hit);ORF_evidence=Q6YXD5 (UniProt);NIAS_FLcDNA=J023090A04;Expression=AK121216;TENOR=Os08t0263100-01;KEGG=Os08t0263100-01
Chr08	irgsp1_rep	five_prime_UTR	9964987	9964991	.	+	.	Parent=Os08t0263100-01
Chr08	irgsp1_rep	CDS	9964992	9965243	.	+	0	Parent=Os08t0263100-01
Chr08	irgsp1_rep	three_prime_UTR	9965244	9965271	.	+	.	Parent=Os08t0263100-01
Chr08	irgsp1_rep	three_prime_UTR	9965458	9965740	.	+	.	Parent=Os08t0263100-01
Chr08	irgsp1_rep	mRNA	9978819	9979975	.	-	.	ID=Os08t0263300-01;Name=Os08t0263300-01;Locus_id=Os08g0263300;Note=Similar to cDNA clone:J013108L16%2C full insert sequence.;Transcript_evidence=AK105898 (DDBJ%2C Best hit);ORF_evidence=B7EDK4 (UniProt);NIAS_FLcDNA=001-204-F06;TENOR=Os08t0263300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	9979801	9979975	.	-	.	Parent=Os08t0263300-01
Chr08	irgsp1_rep	CDS	9979533	9979800	.	-	0	Parent=Os08t0263300-01
Chr08	irgsp1_rep	CDS	9979347	9979438	.	-	2	Parent=Os08t0263300-01
Chr08	irgsp1_rep	three_prime_UTR	9978819	9979346	.	-	.	Parent=Os08t0263300-01
Chr08	irgsp1_rep	mRNA	9976976	9979967	.	-	.	ID=Os08t0263300-02;Name=Os08t0263300-02;Locus_id=Os08g0263300;Note=Similar to Structural molecule.;Transcript_evidence=AK067503 (DDBJ%2C Best hit);ORF_evidence=B6TP74 (UniProt);NIAS_FLcDNA=J013108L16;TENOR=Os08t0263300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	9978659	9979967	.	-	.	Parent=Os08t0263300-02
Chr08	irgsp1_rep	CDS	9978530	9978658	.	-	0	Parent=Os08t0263300-02
Chr08	irgsp1_rep	CDS	9977159	9977389	.	-	0	Parent=Os08t0263300-02
Chr08	irgsp1_rep	three_prime_UTR	9976976	9977158	.	-	.	Parent=Os08t0263300-02
Chr08	irgsp1_rep	mRNA	9984345	9985265	.	+	.	ID=Os08t0263400-01;Name=Os08t0263400-01;Locus_id=Os08g0263400;Note=Hypothetical protein.;Transcript_evidence=AK108832 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-151-G05;Expression=AK108832;TENOR=Os08t0263400-01;KEGG=Os08t0263400-01
Chr08	irgsp1_rep	five_prime_UTR	9984345	9984768	.	+	.	Parent=Os08t0263400-01
Chr08	irgsp1_rep	CDS	9984769	9985122	.	+	0	Parent=Os08t0263400-01
Chr08	irgsp1_rep	three_prime_UTR	9985123	9985265	.	+	.	Parent=Os08t0263400-01
Chr08	irgsp1_rep	mRNA	9985994	9990182	.	+	.	ID=Os08t0263600-00;Name=Os08t0263600-00;Locus_id=Os08g0263600;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FZY5 (UniProt);TENOR=Os08t0263600-00
Chr08	irgsp1_rep	CDS	9985994	9986089	.	+	0	Parent=Os08t0263600-00
Chr08	irgsp1_rep	CDS	9989922	9990182	.	+	0	Parent=Os08t0263600-00
Chr08	irgsp1_rep	mRNA	10051525	10053112	.	+	.	ID=Os08t0264700-00;Name=Os08t0264700-00;Locus_id=Os08g0264700;Note=Hypothetical conserved gene.;Transcript_evidence=AK357017 (DDBJ);ORF_evidence=A2Z578 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);TENOR=Os08t0264700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	10051525	10052415	.	+	0	Parent=Os08t0264700-00
Chr08	irgsp1_rep	three_prime_UTR	10052416	10053112	.	+	.	Parent=Os08t0264700-00
Chr08	irgsp1_rep	mRNA	10062034	10064824	.	+	.	ID=Os08t0265000-01;Name=Os08t0265000-01;Locus_id=Os08g0265000;Note=Hypothetical gene.;Transcript_evidence=AK070072 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023043N14;Expression=AK070072;TENOR=Os08t0265000-01;KEGG=Os08t0265000-01
Chr08	irgsp1_rep	five_prime_UTR	10062034	10062035	.	+	.	Parent=Os08t0265000-01
Chr08	irgsp1_rep	CDS	10062036	10062248	.	+	0	Parent=Os08t0265000-01
Chr08	irgsp1_rep	three_prime_UTR	10062249	10064824	.	+	.	Parent=Os08t0265000-01
Chr08	irgsp1_rep	mRNA	10071862	10080093	.	+	.	ID=Os08t0265300-00;Name=Os08t0265300-00;Locus_id=Os08g0265300;Note=Disease resistance protein domain containing protein.;Transcript_evidence=AJ507093 (DDBJ);ORF_evidence=NP_001175483.1 (RefSeq);GO=Biological Process: defense response (GO:0006952),Molecular Function: protein binding (GO:0005515),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),Leucine-rich repeat (IPR001611),NB-ARC (IPR002182);TENOR=Os08t0265300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	10071862	10072134	.	+	.	Parent=Os08t0265300-00
Chr08	irgsp1_rep	five_prime_UTR	10077358	10077378	.	+	.	Parent=Os08t0265300-00
Chr08	irgsp1_rep	CDS	10077379	10078506	.	+	0	Parent=Os08t0265300-00
Chr08	irgsp1_rep	CDS	10079047	10079835	.	+	0	Parent=Os08t0265300-00
Chr08	irgsp1_rep	CDS	10080000	10080005	.	+	0	Parent=Os08t0265300-00
Chr08	irgsp1_rep	three_prime_UTR	10080006	10080093	.	+	.	Parent=Os08t0265300-00
Chr08	irgsp1_rep	mRNA	10097893	10103955	.	+	.	ID=Os08t0265500-01;Name=Os08t0265500-01;Locus_id=Os08g0265500;Note=Similar to ATPase.;Transcript_evidence=AK100508 (DDBJ%2C Best hit);ORF_evidence=NP_001147054.1 (RefSeq);GO=Molecular Function: ATP binding (GO:0005524);InterPro=ATPase%2C AFG1-like (IPR005654);NIAS_FLcDNA=J023099M05;TENOR=Os08t0265500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	10097893	10098157	.	+	.	Parent=Os08t0265500-01
Chr08	irgsp1_rep	five_prime_UTR	10098246	10098426	.	+	.	Parent=Os08t0265500-01
Chr08	irgsp1_rep	five_prime_UTR	10099181	10099234	.	+	.	Parent=Os08t0265500-01
Chr08	irgsp1_rep	CDS	10099235	10099469	.	+	0	Parent=Os08t0265500-01
Chr08	irgsp1_rep	CDS	10099544	10099623	.	+	2	Parent=Os08t0265500-01
Chr08	irgsp1_rep	CDS	10099720	10099820	.	+	0	Parent=Os08t0265500-01
Chr08	irgsp1_rep	CDS	10099909	10100038	.	+	1	Parent=Os08t0265500-01
Chr08	irgsp1_rep	three_prime_UTR	10100039	10101446	.	+	.	Parent=Os08t0265500-01
Chr08	irgsp1_rep	three_prime_UTR	10101530	10101616	.	+	.	Parent=Os08t0265500-01
Chr08	irgsp1_rep	three_prime_UTR	10101689	10101754	.	+	.	Parent=Os08t0265500-01
Chr08	irgsp1_rep	three_prime_UTR	10101854	10101946	.	+	.	Parent=Os08t0265500-01
Chr08	irgsp1_rep	three_prime_UTR	10102031	10102087	.	+	.	Parent=Os08t0265500-01
Chr08	irgsp1_rep	three_prime_UTR	10102177	10102302	.	+	.	Parent=Os08t0265500-01
Chr08	irgsp1_rep	three_prime_UTR	10102392	10102482	.	+	.	Parent=Os08t0265500-01
Chr08	irgsp1_rep	three_prime_UTR	10102576	10102664	.	+	.	Parent=Os08t0265500-01
Chr08	irgsp1_rep	three_prime_UTR	10103294	10103484	.	+	.	Parent=Os08t0265500-01
Chr08	irgsp1_rep	three_prime_UTR	10103567	10103955	.	+	.	Parent=Os08t0265500-01
Chr08	irgsp1_rep	mRNA	10131802	10135064	.	+	.	ID=Os08t0266200-01;Name=Os08t0266200-01;Locus_id=Os08g0266200;Note=Similar to T24D18.25 protein.;Transcript_evidence=AK069687 (DDBJ%2C Best hit);ORF_evidence=Q9S9M0 (UniProt);NIAS_FLcDNA=J023034A03;Expression=AK069687;TENOR=Os08t0266200-01;KEGG=Os08t0266200-01
Chr08	irgsp1_rep	five_prime_UTR	10131802	10131923	.	+	.	Parent=Os08t0266200-01
Chr08	irgsp1_rep	five_prime_UTR	10134377	10134404	.	+	.	Parent=Os08t0266200-01
Chr08	irgsp1_rep	CDS	10134405	10134698	.	+	0	Parent=Os08t0266200-01
Chr08	irgsp1_rep	three_prime_UTR	10134699	10135064	.	+	.	Parent=Os08t0266200-01
Chr08	irgsp1_rep	mRNA	10136783	10137582	.	-	.	ID=Os08t0266225-00;Name=Os08t0266225-00;Locus_id=Os08g0266225;Note=Conserved hypothetical protein.;Transcript_evidence=AK360718 (DDBJ);ORF_evidence=Q6YTK6 (UniProt);TENOR=Os08t0266225-00
Chr08	irgsp1_rep	CDS	10137433	10137582	.	-	0	Parent=Os08t0266225-00
Chr08	irgsp1_rep	CDS	10137035	10137265	.	-	0	Parent=Os08t0266225-00
Chr08	irgsp1_rep	three_prime_UTR	10136783	10137034	.	-	.	Parent=Os08t0266225-00
Chr08	irgsp1_rep	mRNA	10138571	10141527	.	+	.	ID=Os08t0266300-00;Name=Os08t0266300-00;Locus_id=Os08g0266300;Note=Similar to predicted protein.;Transcript_evidence=EU972525 (DDBJ);ORF_evidence=NP_001061403.2 (RefSeq);TENOR=Os08t0266300-00;KEGG=Os08t0266300-00
Chr08	irgsp1_rep	five_prime_UTR	10138571	10138574	.	+	.	Parent=Os08t0266300-00
Chr08	irgsp1_rep	CDS	10138575	10138899	.	+	0	Parent=Os08t0266300-00
Chr08	irgsp1_rep	CDS	10139633	10139850	.	+	2	Parent=Os08t0266300-00
Chr08	irgsp1_rep	CDS	10140242	10140370	.	+	0	Parent=Os08t0266300-00
Chr08	irgsp1_rep	CDS	10141120	10141255	.	+	0	Parent=Os08t0266300-00
Chr08	irgsp1_rep	CDS	10141352	10141449	.	+	2	Parent=Os08t0266300-00
Chr08	irgsp1_rep	three_prime_UTR	10141450	10141527	.	+	.	Parent=Os08t0266300-00
Chr08	irgsp1_rep	mRNA	10142326	10144699	.	-	.	ID=Os08t0266400-00;Name=Os08t0266400-00;Locus_id=Os08g0266400;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=AK355977 (DDBJ);ORF_evidence=NP_001061404.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);TENOR=Os08t0266400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	10142393	10144699	.	-	0	Parent=Os08t0266400-00
Chr08	irgsp1_rep	three_prime_UTR	10142326	10142392	.	-	.	Parent=Os08t0266400-00
Chr08	irgsp1_rep	mRNA	10152106	10156715	.	+	.	ID=Os08t0266600-01;Name=Os08t0266600-01;Locus_id=Os08g0266600;Note=WD40/YVTN repeat-like domain containing protein.;Transcript_evidence=AK099812 (DDBJ%2C Best hit);ORF_evidence=XP_002867327.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943);NIAS_FLcDNA=J013099F18;Expression=AK099812;TENOR=Os08t0266600-01;KEGG=Os08t0266600-01
Chr08	irgsp1_rep	five_prime_UTR	10152106	10152124	.	+	.	Parent=Os08t0266600-01
Chr08	irgsp1_rep	CDS	10152125	10152735	.	+	0	Parent=Os08t0266600-01
Chr08	irgsp1_rep	CDS	10154008	10154077	.	+	1	Parent=Os08t0266600-01
Chr08	irgsp1_rep	CDS	10155752	10155986	.	+	0	Parent=Os08t0266600-01
Chr08	irgsp1_rep	CDS	10156069	10156142	.	+	2	Parent=Os08t0266600-01
Chr08	irgsp1_rep	CDS	10156224	10156298	.	+	0	Parent=Os08t0266600-01
Chr08	irgsp1_rep	three_prime_UTR	10156299	10156715	.	+	.	Parent=Os08t0266600-01
Chr08	irgsp1_rep	mRNA	10160233	10165699	.	+	.	ID=Os08t0266700-01;Name=Os08t0266700-01;Locus_id=Os08g0266700;CGSNL Gene Symbol=RAD21-3;CGSNL Gene Name=RAD21-3 PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsRad21-3;Oryzabase Gene Name Synonym(s)=Rad21-3 protein;Note=Rad21/Rec8 like protein%2C C-terminal domain containing protein.;Transcript_evidence=AK101268 (DDBJ%2C Best hit);ORF_evidence=Q6UFU8 (UniProt);GO=Cellular Component: nuclear Chromosome (GO:0000228),Molecular Function: protein binding (GO:0005515);InterPro=Rad21/Rec8-like protein%2C C-terminal%2C eukaryotic (IPR006909),Rad21/Rec8-like protein%2C N-terminal (IPR006910),Rad21/Rec8-like protein%2C C-terminal (IPR023093);NIAS_FLcDNA=J033032L24;Oryzabase=6885;Expression=AK101268;TENOR=Os08t0266700-01;KEGG=Os08t0266700-01
Chr08	irgsp1_rep	five_prime_UTR	10160233	10160366	.	+	.	Parent=Os08t0266700-01
Chr08	irgsp1_rep	CDS	10160367	10160490	.	+	0	Parent=Os08t0266700-01
Chr08	irgsp1_rep	CDS	10161843	10162104	.	+	2	Parent=Os08t0266700-01
Chr08	irgsp1_rep	CDS	10162182	10162228	.	+	1	Parent=Os08t0266700-01
Chr08	irgsp1_rep	CDS	10162310	10162341	.	+	2	Parent=Os08t0266700-01
Chr08	irgsp1_rep	CDS	10162422	10162489	.	+	0	Parent=Os08t0266700-01
Chr08	irgsp1_rep	CDS	10162557	10162948	.	+	1	Parent=Os08t0266700-01
Chr08	irgsp1_rep	CDS	10163154	10163352	.	+	2	Parent=Os08t0266700-01
Chr08	irgsp1_rep	CDS	10163837	10163979	.	+	1	Parent=Os08t0266700-01
Chr08	irgsp1_rep	CDS	10164065	10164752	.	+	2	Parent=Os08t0266700-01
Chr08	irgsp1_rep	CDS	10164836	10164968	.	+	1	Parent=Os08t0266700-01
Chr08	irgsp1_rep	CDS	10165068	10165166	.	+	0	Parent=Os08t0266700-01
Chr08	irgsp1_rep	three_prime_UTR	10165167	10165699	.	+	.	Parent=Os08t0266700-01
Chr08	irgsp1_rep	mRNA	10198285	10201713	.	-	.	ID=Os08t0267000-00;Name=Os08t0267000-00;Locus_id=Os08g0267000;Oryzabase Gene Symbol Synonym(s)=OsFbox430%2C Os_F0456;Oryzabase Gene Name Synonym(s)=F-box protein 430;Note=F-box domain%2C Skp2-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6YTJ5 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);Oryzabase=17202;TENOR=Os08t0267000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	10200901	10201713	.	-	0	Parent=Os08t0267000-00
Chr08	irgsp1_rep	CDS	10198792	10199088	.	-	0	Parent=Os08t0267000-00
Chr08	irgsp1_rep	CDS	10198285	10198293	.	-	0	Parent=Os08t0267000-00
Chr08	irgsp1_rep	mRNA	10190139	10193202	.	-	.	ID=Os08t0267300-00;Name=Os08t0267300-00;Locus_id=Os08g0267300;Note=Peptidase A1 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001061407.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);TENOR=Os08t0267300-00;KEGG=Os08t0267300-00
Chr08	irgsp1_rep	CDS	10193016	10193202	.	-	0	Parent=Os08t0267300-00
Chr08	irgsp1_rep	CDS	10190139	10191526	.	-	2	Parent=Os08t0267300-00
Chr08	irgsp1_rep	mRNA	10190145	10191481	.	+	.	ID=Os08t0267425-00;Name=Os08t0267425-00;Locus_id=Os08g0267425;Note=Non-protein coding transcript.;Transcript_evidence=EU947645 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0267425-00
Chr08	irgsp1_rep	exon	10190145	10191481	.	+	.	Parent=Os08t0267425-00
Chr08	irgsp1_rep	mRNA	10198947	10201019	.	+	.	ID=Os08t0267450-01;Name=Os08t0267450-01;Locus_id=Os08g0267450;Note=Hypothetical gene.;Transcript_evidence=AK288476 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090038B01;TENOR=Os08t0267450-01;KEGG=Os08t0267450-01
Chr08	irgsp1_rep	five_prime_UTR	10198947	10199806	.	+	.	Parent=Os08t0267450-01
Chr08	irgsp1_rep	CDS	10199807	10200094	.	+	0	Parent=Os08t0267450-01
Chr08	irgsp1_rep	three_prime_UTR	10200095	10201019	.	+	.	Parent=Os08t0267450-01
Chr08	irgsp1_rep	mRNA	10217767	10220568	.	-	.	ID=Os08t0267800-01;Name=Os08t0267800-01;Locus_id=Os08g0267800;Oryzabase Gene Symbol Synonym(s)=OsFbox431%2C Os_F0614;Oryzabase Gene Name Synonym(s)=F-box protein 431;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK101465 (DDBJ%2C Best hit);ORF_evidence=B8AIT8 (UniProt);NIAS_FLcDNA=J033040I01;Oryzabase=17203;Expression=AK101465;TENOR=Os08t0267800-01;KEGG=Os08t0267800-01
Chr08	irgsp1_rep	five_prime_UTR	10220424	10220568	.	-	.	Parent=Os08t0267800-01
Chr08	irgsp1_rep	CDS	10219566	10220423	.	-	0	Parent=Os08t0267800-01
Chr08	irgsp1_rep	CDS	10218508	10218657	.	-	0	Parent=Os08t0267800-01
Chr08	irgsp1_rep	CDS	10218030	10218413	.	-	0	Parent=Os08t0267800-01
Chr08	irgsp1_rep	three_prime_UTR	10217767	10218029	.	-	.	Parent=Os08t0267800-01
Chr08	irgsp1_rep	mRNA	10221804	10222906	.	-	.	ID=Os08t0268000-01;Name=Os08t0268000-01;Locus_id=Os08g0268000;Note=Conserved hypothetical protein.;Transcript_evidence=AK107040 (DDBJ%2C Best hit);ORF_evidence=A2X9S8 (UniProt);NIAS_FLcDNA=002-121-C02;Expression=AK107040;TENOR=Os08t0268000-01;KEGG=Os08t0268000-01
Chr08	irgsp1_rep	five_prime_UTR	10222823	10222906	.	-	.	Parent=Os08t0268000-01
Chr08	irgsp1_rep	CDS	10222476	10222822	.	-	0	Parent=Os08t0268000-01
Chr08	irgsp1_rep	CDS	10221958	10222336	.	-	1	Parent=Os08t0268000-01
Chr08	irgsp1_rep	three_prime_UTR	10221804	10221957	.	-	.	Parent=Os08t0268000-01
Chr08	irgsp1_rep	mRNA	10257621	10259312	.	+	.	ID=Os08t0268550-01;Name=Os08t0268550-01;Locus_id=Os08g0268550;Note=Conserved hypothetical protein.;Transcript_evidence=AK110860 (DDBJ%2C Best hit);ORF_evidence=A3BRD0 (UniProt);NIAS_FLcDNA=002-172-D05;TENOR=Os08t0268550-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	10257621	10257782	.	+	.	Parent=Os08t0268550-01
Chr08	irgsp1_rep	CDS	10257783	10257863	.	+	0	Parent=Os08t0268550-01
Chr08	irgsp1_rep	CDS	10257926	10258243	.	+	0	Parent=Os08t0268550-01
Chr08	irgsp1_rep	three_prime_UTR	10258244	10259312	.	+	.	Parent=Os08t0268550-01
Chr08	irgsp1_rep	mRNA	10265432	10268892	.	+	.	ID=Os08t0268900-01;Name=Os08t0268900-01;Locus_id=Os08g0268900;Note=Hypothetical conserved gene.;Transcript_evidence=AK100341 (DDBJ%2C Best hit);ORF_evidence=A3BRD0 (UniProt);NIAS_FLcDNA=J023082B07;Expression=AK100341;TENOR=Os08t0268900-01;KEGG=Os08t0268900-01
Chr08	irgsp1_rep	five_prime_UTR	10265432	10266281	.	+	.	Parent=Os08t0268900-01
Chr08	irgsp1_rep	CDS	10266282	10266493	.	+	0	Parent=Os08t0268900-01
Chr08	irgsp1_rep	CDS	10266579	10266750	.	+	1	Parent=Os08t0268900-01
Chr08	irgsp1_rep	three_prime_UTR	10266751	10268892	.	+	.	Parent=Os08t0268900-01
Chr08	irgsp1_rep	mRNA	10269576	10270739	.	-	.	ID=Os08t0269000-01;Name=Os08t0269000-01;Locus_id=Os08g0269000;Note=Hypothetical conserved gene.;Transcript_evidence=AK119946 (DDBJ%2C Best hit);ORF_evidence=B9G000 (UniProt);InterPro=Protein of unknown function DUF593 (IPR007656);NIAS_FLcDNA=002-184-B12;Expression=AK119946;TENOR=Os08t0269000-01;KEGG=Os08t0269000-01
Chr08	irgsp1_rep	five_prime_UTR	10270632	10270739	.	-	.	Parent=Os08t0269000-01
Chr08	irgsp1_rep	CDS	10269759	10270631	.	-	0	Parent=Os08t0269000-01
Chr08	irgsp1_rep	three_prime_UTR	10269576	10269758	.	-	.	Parent=Os08t0269000-01
Chr08	irgsp1_rep	mRNA	10284185	10285114	.	+	.	ID=Os08t0269300-00;Name=Os08t0269300-00;Locus_id=Os08g0269300;Note=Similar to H0311C03.5 protein.;Transcript_evidence=EU964122 (DDBJ);ORF_evidence=Q01I89 (UniProt);TENOR=Os08t0269300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	10284185	10284652	.	+	0	Parent=Os08t0269300-00
Chr08	irgsp1_rep	three_prime_UTR	10284653	10284662	.	+	.	Parent=Os08t0269300-00
Chr08	irgsp1_rep	three_prime_UTR	10284782	10285114	.	+	.	Parent=Os08t0269300-00
Chr08	irgsp1_rep	mRNA	10287058	10287839	.	-	.	ID=Os08t0269500-01;Name=Os08t0269500-01;Locus_id=Os08g0269500;Note=Conserved hypothetical protein.;Transcript_evidence=AK062738 (DDBJ%2C Best hit);ORF_evidence=Q6ZAX7 (UniProt);NIAS_FLcDNA=001-106-E12;Expression=AK062738;TENOR=Os08t0269500-01;KEGG=Os08t0269500-01
Chr08	irgsp1_rep	five_prime_UTR	10287804	10287839	.	-	.	Parent=Os08t0269500-01
Chr08	irgsp1_rep	CDS	10287662	10287803	.	-	0	Parent=Os08t0269500-01
Chr08	irgsp1_rep	CDS	10287261	10287514	.	-	2	Parent=Os08t0269500-01
Chr08	irgsp1_rep	three_prime_UTR	10287058	10287260	.	-	.	Parent=Os08t0269500-01
Chr08	irgsp1_rep	mRNA	10291954	10292821	.	-	.	ID=Os08t0269600-01;Name=Os08t0269600-01;Locus_id=Os08g0269600;Note=EGF-like region domain containing protein.;Transcript_evidence=AK059478 (DDBJ%2C Best hit);ORF_evidence=B8B916 (UniProt);NIAS_FLcDNA=001-028-F02;Expression=AK059478;TENOR=Os08t0269600-01;KEGG=Os08t0269600-01
Chr08	irgsp1_rep	CDS	10292683	10292821	.	-	0	Parent=Os08t0269600-01
Chr08	irgsp1_rep	CDS	10292405	10292529	.	-	2	Parent=Os08t0269600-01
Chr08	irgsp1_rep	CDS	10292115	10292282	.	-	0	Parent=Os08t0269600-01
Chr08	irgsp1_rep	three_prime_UTR	10291954	10292114	.	-	.	Parent=Os08t0269600-01
Chr08	irgsp1_rep	mRNA	10294239	10295050	.	-	.	ID=Os08t0269700-01;Name=Os08t0269700-01;Locus_id=Os08g0269700;Note=Conserved hypothetical protein.;Transcript_evidence=AK063209 (DDBJ%2C Best hit);ORF_evidence=A2YT92 (UniProt);NIAS_FLcDNA=001-112-D04;Expression=AK063209;TENOR=Os08t0269700-01;KEGG=Os08t0269700-01
Chr08	irgsp1_rep	five_prime_UTR	10295016	10295050	.	-	.	Parent=Os08t0269700-01
Chr08	irgsp1_rep	CDS	10294880	10295015	.	-	0	Parent=Os08t0269700-01
Chr08	irgsp1_rep	CDS	10294456	10294730	.	-	2	Parent=Os08t0269700-01
Chr08	irgsp1_rep	three_prime_UTR	10294239	10294455	.	-	.	Parent=Os08t0269700-01
Chr08	irgsp1_rep	mRNA	10296961	10300697	.	-	.	ID=Os08t0269800-01;Name=Os08t0269800-01;Locus_id=Os08g0269800;Oryzabase Gene Symbol Synonym(s)=OsFbox432%2C Os_F0694;Oryzabase Gene Name Synonym(s)=F-box protein 432;Note=Similar to Ubiquitin-protein ligase.;Transcript_evidence=AK120307 (DDBJ%2C Best hit);ORF_evidence=B6T716 (UniProt);NIAS_FLcDNA=J013054G18;Oryzabase=17204;TENOR=Os08t0269800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	10300692	10300697	.	-	.	Parent=Os08t0269800-01
Chr08	irgsp1_rep	CDS	10300224	10300691	.	-	0	Parent=Os08t0269800-01
Chr08	irgsp1_rep	three_prime_UTR	10296961	10300223	.	-	.	Parent=Os08t0269800-01
Chr08	irgsp1_rep	mRNA	10314550	10320983	.	+	.	ID=Os08t0270000-00;Name=Os08t0270000-00;Locus_id=Os08g0270000;Oryzabase Gene Symbol Synonym(s)=OsFbox433%2C Os_F0239;Oryzabase Gene Name Synonym(s)=F-box protein 433;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6YX11 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17205;TENOR=Os08t0270000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	10314550	10314660	.	+	0	Parent=Os08t0270000-00
Chr08	irgsp1_rep	CDS	10318373	10318571	.	+	0	Parent=Os08t0270000-00
Chr08	irgsp1_rep	CDS	10319244	10320100	.	+	2	Parent=Os08t0270000-00
Chr08	irgsp1_rep	CDS	10320508	10320663	.	+	0	Parent=Os08t0270000-00
Chr08	irgsp1_rep	CDS	10320747	10320983	.	+	0	Parent=Os08t0270000-00
Chr08	irgsp1_rep	mRNA	10329433	10335439	.	+	.	ID=Os08t0270200-01;Name=Os08t0270200-01;Locus_id=Os08g0270200;Note=Exosome-associated family protein.;Transcript_evidence=AK101221 (DDBJ%2C Best hit);ORF_evidence=A3BRE0 (UniProt);InterPro=Sas10/Utp3/C1D (IPR007146),Exosome-associated factor Rrp47/DNA strand repair C1D (IPR011082);NIAS_FLcDNA=J033031C23;Expression=AK101221;TENOR=Os08t0270200-01;KEGG=Os08t0270200-01
Chr08	irgsp1_rep	five_prime_UTR	10329433	10329500	.	+	.	Parent=Os08t0270200-01
Chr08	irgsp1_rep	CDS	10329501	10329716	.	+	0	Parent=Os08t0270200-01
Chr08	irgsp1_rep	CDS	10329815	10329874	.	+	0	Parent=Os08t0270200-01
Chr08	irgsp1_rep	CDS	10332230	10332284	.	+	0	Parent=Os08t0270200-01
Chr08	irgsp1_rep	CDS	10332370	10332450	.	+	2	Parent=Os08t0270200-01
Chr08	irgsp1_rep	CDS	10332532	10332743	.	+	2	Parent=Os08t0270200-01
Chr08	irgsp1_rep	three_prime_UTR	10332744	10332771	.	+	.	Parent=Os08t0270200-01
Chr08	irgsp1_rep	three_prime_UTR	10335040	10335439	.	+	.	Parent=Os08t0270200-01
Chr08	irgsp1_rep	mRNA	10355413	10358378	.	-	.	ID=Os08t0270400-00;Name=Os08t0270400-00;Locus_id=Os08g0270400;CGSNL Gene Symbol=CAD5;CGSNL Gene Name=CINNAMYL ALCOHOL DEHYDROGENASE 5;Oryzabase Gene Symbol Synonym(s)=OsCAD5;Oryzabase Gene Name Synonym(s)=Cinnamyl alcohol dehydrogenase 5;Note=Similar to Cinnamyl alcohol dehydrogenase.;Transcript_evidence=AK332010 (DDBJ);ORF_evidence=Q8S411 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),Alcohol dehydrogenase%2C zinc-type%2C conserved site (IPR002328),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040),Polyketide synthase%2C enoylreductase (IPR020843);Oryzabase=10434;TENOR=Os08t0270400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	10358376	10358378	.	-	.	Parent=Os08t0270400-00
Chr08	irgsp1_rep	CDS	10358299	10358375	.	-	0	Parent=Os08t0270400-00
Chr08	irgsp1_rep	CDS	10356821	10356934	.	-	1	Parent=Os08t0270400-00
Chr08	irgsp1_rep	CDS	10355768	10356383	.	-	1	Parent=Os08t0270400-00
Chr08	irgsp1_rep	CDS	10355556	10355663	.	-	0	Parent=Os08t0270400-00
Chr08	irgsp1_rep	three_prime_UTR	10355413	10355555	.	-	.	Parent=Os08t0270400-00
Chr08	irgsp1_rep	mRNA	10361690	10364290	.	-	.	ID=Os08t0270500-01;Name=Os08t0270500-01;Locus_id=Os08g0270500;Note=Conserved hypothetical protein.;Transcript_evidence=AK107458 (DDBJ%2C Best hit);ORF_evidence=NP_001043901.1 (RefSeq);NIAS_FLcDNA=002-129-A01;TENOR=Os08t0270500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	10363433	10364290	.	-	.	Parent=Os08t0270500-01
Chr08	irgsp1_rep	five_prime_UTR	10363136	10363319	.	-	.	Parent=Os08t0270500-01
Chr08	irgsp1_rep	five_prime_UTR	10362169	10362531	.	-	.	Parent=Os08t0270500-01
Chr08	irgsp1_rep	CDS	10362070	10362168	.	-	0	Parent=Os08t0270500-01
Chr08	irgsp1_rep	CDS	10361910	10361933	.	-	0	Parent=Os08t0270500-01
Chr08	irgsp1_rep	three_prime_UTR	10361690	10361909	.	-	.	Parent=Os08t0270500-01
Chr08	irgsp1_rep	mRNA	10360387	10364219	.	-	.	ID=Os08t0270500-02;Name=Os08t0270500-02;Locus_id=Os08g0270500;Note=Conserved hypothetical protein.;Transcript_evidence=AK103749 (DDBJ%2C Best hit);ORF_evidence=NP_001043901.1 (RefSeq);NIAS_FLcDNA=J033142I04;Expression=AK103749;TENOR=Os08t0270500-02;KEGG=Os08t0270500-02
Chr08	irgsp1_rep	five_prime_UTR	10363946	10364219	.	-	.	Parent=Os08t0270500-02
Chr08	irgsp1_rep	five_prime_UTR	10362169	10363238	.	-	.	Parent=Os08t0270500-02
Chr08	irgsp1_rep	CDS	10362070	10362168	.	-	0	Parent=Os08t0270500-02
Chr08	irgsp1_rep	CDS	10361910	10361933	.	-	0	Parent=Os08t0270500-02
Chr08	irgsp1_rep	three_prime_UTR	10361567	10361909	.	-	.	Parent=Os08t0270500-02
Chr08	irgsp1_rep	three_prime_UTR	10360387	10360732	.	-	.	Parent=Os08t0270500-02
Chr08	irgsp1_rep	mRNA	10367168	10369094	.	+	.	ID=Os08t0270800-01;Name=Os08t0270800-01;Locus_id=Os08g0270800;Note=Conserved hypothetical protein.;Transcript_evidence=AK066874 (DDBJ%2C Best hit);ORF_evidence=A2YT97 (UniProt);NIAS_FLcDNA=J013075I05;Expression=AK066874;TENOR=Os08t0270800-01;KEGG=Os08t0270800-01
Chr08	irgsp1_rep	five_prime_UTR	10367168	10367406	.	+	.	Parent=Os08t0270800-01
Chr08	irgsp1_rep	CDS	10367407	10367580	.	+	0	Parent=Os08t0270800-01
Chr08	irgsp1_rep	CDS	10368150	10368220	.	+	0	Parent=Os08t0270800-01
Chr08	irgsp1_rep	CDS	10368344	10368578	.	+	1	Parent=Os08t0270800-01
Chr08	irgsp1_rep	CDS	10368660	10368863	.	+	0	Parent=Os08t0270800-01
Chr08	irgsp1_rep	three_prime_UTR	10368864	10369094	.	+	.	Parent=Os08t0270800-01
Chr08	irgsp1_rep	mRNA	10367301	10369143	.	+	.	ID=Os08t0270800-02;Name=Os08t0270800-02;Locus_id=Os08g0270800;Note=Similar to cDNA clone:J013075I05%2C full insert sequence.;Transcript_evidence=AK061845 (DDBJ%2C Best hit);ORF_evidence=B7ECR4 (UniProt);NIAS_FLcDNA=001-040-F01;Expression=AK061845;TENOR=Os08t0270800-02;KEGG=Os08t0270800-02
Chr08	irgsp1_rep	five_prime_UTR	10367301	10367406	.	+	.	Parent=Os08t0270800-02
Chr08	irgsp1_rep	CDS	10367407	10367580	.	+	0	Parent=Os08t0270800-02
Chr08	irgsp1_rep	CDS	10368150	10368220	.	+	0	Parent=Os08t0270800-02
Chr08	irgsp1_rep	CDS	10368344	10368578	.	+	1	Parent=Os08t0270800-02
Chr08	irgsp1_rep	CDS	10368660	10368863	.	+	0	Parent=Os08t0270800-02
Chr08	irgsp1_rep	three_prime_UTR	10368864	10369143	.	+	.	Parent=Os08t0270800-02
Chr08	irgsp1_rep	mRNA	10372707	10373655	.	-	.	ID=Os08t0270900-01;Name=Os08t0270900-01;Locus_id=Os08g0270900;Note=Conserved hypothetical protein.;Transcript_evidence=AK108117 (DDBJ%2C Best hit);ORF_evidence=A2YT99 (UniProt);NIAS_FLcDNA=002-139-C06;TENOR=Os08t0270900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	10373654	10373655	.	-	.	Parent=Os08t0270900-01
Chr08	irgsp1_rep	CDS	10372877	10373653	.	-	0	Parent=Os08t0270900-01
Chr08	irgsp1_rep	three_prime_UTR	10372707	10372876	.	-	.	Parent=Os08t0270900-01
Chr08	irgsp1_rep	mRNA	10410093	10411679	.	+	.	ID=Os08t0271400-01;Name=Os08t0271400-01;Locus_id=Os08g0271400;Note=Hypothetical protein.;Transcript_evidence=AK062750 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-106-G02;Expression=AK062750;TENOR=Os08t0271400-01;KEGG=Os08t0271400-01
Chr08	irgsp1_rep	five_prime_UTR	10410093	10410133	.	+	.	Parent=Os08t0271400-01
Chr08	irgsp1_rep	CDS	10410134	10410463	.	+	0	Parent=Os08t0271400-01
Chr08	irgsp1_rep	three_prime_UTR	10410464	10410471	.	+	.	Parent=Os08t0271400-01
Chr08	irgsp1_rep	three_prime_UTR	10410662	10410715	.	+	.	Parent=Os08t0271400-01
Chr08	irgsp1_rep	three_prime_UTR	10411385	10411679	.	+	.	Parent=Os08t0271400-01
Chr08	irgsp1_rep	mRNA	10425433	10425813	.	-	.	ID=Os08t0271600-00;Name=Os08t0271600-00;Locus_id=Os08g0271600;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A3C362 (UniProt);TENOR=Os08t0271600-00;KEGG=Os08t0271600-00
Chr08	irgsp1_rep	CDS	10425433	10425813	.	-	0	Parent=Os08t0271600-00
Chr08	irgsp1_rep	mRNA	10444349	10446816	.	-	.	ID=Os08t0272000-01;Name=Os08t0272000-01;Locus_id=Os08g0272000;Note=Similar to GAG1At protein.;Transcript_evidence=AK111355 (DDBJ%2C Best hit);ORF_evidence=P93048 (UniProt);NIAS_FLcDNA=002-181-G12;Expression=AK111355;TENOR=Os08t0272000-01;KEGG=Os08t0272000-01
Chr08	irgsp1_rep	CDS	10446672	10446816	.	-	0	Parent=Os08t0272000-01
Chr08	irgsp1_rep	CDS	10444627	10444724	.	-	2	Parent=Os08t0272000-01
Chr08	irgsp1_rep	three_prime_UTR	10444349	10444626	.	-	.	Parent=Os08t0272000-01
Chr08	irgsp1_rep	mRNA	10453730	10456174	.	+	.	ID=Os08t0272200-00;Name=Os08t0272200-00;Locus_id=Os08g0272200;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=BT065329 (DDBJ);ORF_evidence=NP_001061426.1 (RefSeq);InterPro=Pentatricopeptide repeat (IPR002885);TENOR=Os08t0272200-00;KEGG=Os08t0272200-00
Chr08	irgsp1_rep	CDS	10453730	10454373	.	+	0	Parent=Os08t0272200-00
Chr08	irgsp1_rep	CDS	10455127	10456156	.	+	1	Parent=Os08t0272200-00
Chr08	irgsp1_rep	three_prime_UTR	10456157	10456174	.	+	.	Parent=Os08t0272200-00
Chr08	irgsp1_rep	mRNA	10473629	10474373	.	+	.	ID=Os08t0272800-01;Name=Os08t0272800-01;Locus_id=Os08g0272800;Note=Hypothetical gene.;Transcript_evidence=AK062340 (DDBJ%2C Best hit),AK073806 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-101-E11,J033070B06;Expression=AK062340;TENOR=Os08t0272800-01;KEGG=Os08t0272800-01
Chr08	irgsp1_rep	five_prime_UTR	10473629	10473630	.	+	.	Parent=Os08t0272800-01
Chr08	irgsp1_rep	CDS	10473631	10474020	.	+	0	Parent=Os08t0272800-01
Chr08	irgsp1_rep	three_prime_UTR	10474021	10474373	.	+	.	Parent=Os08t0272800-01
Chr08	irgsp1_rep	mRNA	10491641	10494280	.	-	.	ID=Os08t0273000-01;Name=Os08t0273000-01;Locus_id=Os08g0273000;Note=Conserved hypothetical protein.;Transcript_evidence=AK119305 (DDBJ%2C Best hit);ORF_evidence=XP_002453806.1 (RefSeq);NIAS_FLcDNA=001-130-F06;TENOR=Os08t0273000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	10493145	10494280	.	-	.	Parent=Os08t0273000-01
Chr08	irgsp1_rep	CDS	10492908	10493144	.	-	0	Parent=Os08t0273000-01
Chr08	irgsp1_rep	three_prime_UTR	10491641	10492907	.	-	.	Parent=Os08t0273000-01
Chr08	irgsp1_rep	mRNA	10534399	10539928	.	+	.	ID=Os08t0273600-01;Name=Os08t0273600-01;Locus_id=Os08g0273600;Note=Non-protein coding transcript.;Transcript_evidence=AK242255 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J075183D01;TENOR=Os08t0273600-01
Chr08	irgsp1_rep	exon	10534399	10534996	.	+	.	Parent=Os08t0273600-01
Chr08	irgsp1_rep	exon	10536601	10536668	.	+	.	Parent=Os08t0273600-01
Chr08	irgsp1_rep	exon	10539669	10539928	.	+	.	Parent=Os08t0273600-01
Chr08	irgsp1_rep	mRNA	10538061	10538823	.	-	.	ID=Os08t0273783-00;Name=Os08t0273783-00;Locus_id=Os08g0273783;Note=Similar to Zinc finger%2C C2H2 type family protein%2C expressed.;Transcript_evidence=AK376150 (DDBJ);ORF_evidence=Q10PE6 (UniProt);TENOR=Os08t0273783-00
Chr08	irgsp1_rep	CDS	10538488	10538823	.	-	0	Parent=Os08t0273783-00
Chr08	irgsp1_rep	three_prime_UTR	10538061	10538487	.	-	.	Parent=Os08t0273783-00
Chr08	irgsp1_rep	mRNA	10567310	10567726	.	-	.	ID=Os08t0274150-00;Name=Os08t0274150-00;Locus_id=Os08g0274150;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os08t0274150-00;KEGG=Os08t0274150-00
Chr08	irgsp1_rep	CDS	10567310	10567726	.	-	0	Parent=Os08t0274150-00
Chr08	irgsp1_rep	mRNA	10567331	10578007	.	+	.	ID=Os08t0274700-01;Name=Os08t0274700-01;Locus_id=Os08g0274700;CGSNL Gene Symbol=PSF3;CGSNL Gene Name=PARTNER OF SLD FIVE 3;Oryzabase Gene Symbol Synonym(s)=PSF3;Oryzabase Gene Name Synonym(s)=partner of Sld five 3;Note=Similar to TTN10.;Transcript_evidence=AK120575 (DDBJ%2C Best hit);ORF_evidence=NP_001147271.1 (RefSeq);InterPro=GINS complex%2C subunit Psf3 (IPR010492),GINS complex (IPR021151);NIAS_FLcDNA=J013134L17;Oryzabase=7454;TENOR=Os08t0274700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	10567331	10567758	.	+	.	Parent=Os08t0274700-01
Chr08	irgsp1_rep	five_prime_UTR	10571907	10571974	.	+	.	Parent=Os08t0274700-01
Chr08	irgsp1_rep	CDS	10571975	10572019	.	+	0	Parent=Os08t0274700-01
Chr08	irgsp1_rep	CDS	10572098	10572169	.	+	0	Parent=Os08t0274700-01
Chr08	irgsp1_rep	CDS	10572529	10572632	.	+	0	Parent=Os08t0274700-01
Chr08	irgsp1_rep	CDS	10572825	10572917	.	+	1	Parent=Os08t0274700-01
Chr08	irgsp1_rep	CDS	10577387	10577526	.	+	1	Parent=Os08t0274700-01
Chr08	irgsp1_rep	CDS	10577640	10577770	.	+	2	Parent=Os08t0274700-01
Chr08	irgsp1_rep	three_prime_UTR	10577771	10578007	.	+	.	Parent=Os08t0274700-01
Chr08	irgsp1_rep	mRNA	10572096	10577884	.	+	.	ID=Os08t0274700-02;Name=Os08t0274700-02;Locus_id=Os08g0274700;CGSNL Gene Symbol=PSF3;CGSNL Gene Name=PARTNER OF SLD FIVE 3;Oryzabase Gene Symbol Synonym(s)=PSF3;Oryzabase Gene Name Synonym(s)=partner of Sld five 3;Note=Similar to TTN10.;Transcript_evidence=AK059326 (DDBJ%2C Best hit);ORF_evidence=NP_001147271.1 (RefSeq);InterPro=GINS complex%2C subunit Psf3 (IPR010492),GINS complex (IPR021151);NIAS_FLcDNA=001-026-A02;Oryzabase=7454;Expression=AK059326;TENOR=Os08t0274700-02;KEGG=Os08t0274700-02
Chr08	irgsp1_rep	five_prime_UTR	10572096	10572097	.	+	.	Parent=Os08t0274700-02
Chr08	irgsp1_rep	CDS	10572098	10572169	.	+	0	Parent=Os08t0274700-02
Chr08	irgsp1_rep	CDS	10572529	10572632	.	+	0	Parent=Os08t0274700-02
Chr08	irgsp1_rep	CDS	10572825	10572917	.	+	1	Parent=Os08t0274700-02
Chr08	irgsp1_rep	CDS	10577387	10577526	.	+	1	Parent=Os08t0274700-02
Chr08	irgsp1_rep	CDS	10577640	10577770	.	+	2	Parent=Os08t0274700-02
Chr08	irgsp1_rep	three_prime_UTR	10577771	10577884	.	+	.	Parent=Os08t0274700-02
Chr08	irgsp1_rep	mRNA	10569519	10569899	.	+	.	ID=Os08t0274775-00;Name=Os08t0274775-00;Locus_id=Os08g0274775;Note=Similar to phosphatidylinositol 3-and 4-kinase family protein.;Transcript_evidence=BT035105 (DDBJ);ORF_evidence=XP_002882071.1 (RefSeq);TENOR=Os08t0274775-00
Chr08	irgsp1_rep	CDS	10569519	10569899	.	+	0	Parent=Os08t0274775-00
Chr08	irgsp1_rep	mRNA	10590895	10592947	.	+	.	ID=Os08t0275200-00;Name=Os08t0275200-00;Locus_id=Os08g0275200;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=EU975982 (DDBJ);ORF_evidence=NP_001152535.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os08t0275200-00;KEGG=Os08t0275200-00
Chr08	irgsp1_rep	CDS	10590895	10592928	.	+	0	Parent=Os08t0275200-00
Chr08	irgsp1_rep	three_prime_UTR	10592929	10592947	.	+	.	Parent=Os08t0275200-00
Chr08	irgsp1_rep	mRNA	10591039	10592636	.	-	.	ID=Os08t0275600-00;Name=Os08t0275600-00;Locus_id=Os08g0275600;Note=Hypothetical protein.;Transcript_evidence=AK373265 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0275600-00
Chr08	irgsp1_rep	five_prime_UTR	10592635	10592636	.	-	.	Parent=Os08t0275600-00
Chr08	irgsp1_rep	CDS	10592337	10592634	.	-	0	Parent=Os08t0275600-00
Chr08	irgsp1_rep	CDS	10591073	10591398	.	-	2	Parent=Os08t0275600-00
Chr08	irgsp1_rep	three_prime_UTR	10591039	10591072	.	-	.	Parent=Os08t0275600-00
Chr08	irgsp1_rep	mRNA	10621769	10625430	.	-	.	ID=Os08t0276000-01;Name=Os08t0276000-01;Locus_id=Os08g0276000;Note=Similar to Transmembrane 9 superfamily protein member 4.;Transcript_evidence=AK070103 (DDBJ%2C Best hit);ORF_evidence=B6SXZ2 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Nonaspanin (TM9SF) (IPR004240);NIAS_FLcDNA=J023043G13;TENOR=Os08t0276000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	10625327	10625430	.	-	.	Parent=Os08t0276000-01
Chr08	irgsp1_rep	CDS	10625210	10625326	.	-	0	Parent=Os08t0276000-01
Chr08	irgsp1_rep	CDS	10624292	10624423	.	-	0	Parent=Os08t0276000-01
Chr08	irgsp1_rep	CDS	10624119	10624208	.	-	0	Parent=Os08t0276000-01
Chr08	irgsp1_rep	three_prime_UTR	10623907	10624118	.	-	.	Parent=Os08t0276000-01
Chr08	irgsp1_rep	three_prime_UTR	10623674	10623813	.	-	.	Parent=Os08t0276000-01
Chr08	irgsp1_rep	three_prime_UTR	10623441	10623594	.	-	.	Parent=Os08t0276000-01
Chr08	irgsp1_rep	three_prime_UTR	10621769	10623296	.	-	.	Parent=Os08t0276000-01
Chr08	irgsp1_rep	mRNA	10630309	10633641	.	+	.	ID=Os08t0276100-01;Name=Os08t0276100-01;Locus_id=Os08g0276100;Note=Similar to NDF1 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1).;Transcript_evidence=AK068157 (DDBJ%2C Best hit),AK104325 (DDBJ%2C Best hit),AK105984 (DDBJ%2C Best hit);ORF_evidence=NP_563986.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 9 (IPR002201);NIAS_FLcDNA=J013134G12,001-027-H10,001-205-G04;TENOR=Os08t0276100-01
Chr08	irgsp1_rep	five_prime_UTR	10630309	10630342	.	+	.	Parent=Os08t0276100-01
Chr08	irgsp1_rep	CDS	10630343	10630918	.	+	0	Parent=Os08t0276100-01
Chr08	irgsp1_rep	CDS	10631675	10631865	.	+	0	Parent=Os08t0276100-01
Chr08	irgsp1_rep	CDS	10632387	10632644	.	+	1	Parent=Os08t0276100-01
Chr08	irgsp1_rep	CDS	10632765	10632882	.	+	1	Parent=Os08t0276100-01
Chr08	irgsp1_rep	CDS	10633007	10633092	.	+	0	Parent=Os08t0276100-01
Chr08	irgsp1_rep	CDS	10633196	10633376	.	+	1	Parent=Os08t0276100-01
Chr08	irgsp1_rep	three_prime_UTR	10633377	10633641	.	+	.	Parent=Os08t0276100-01
Chr08	irgsp1_rep	mRNA	10637548	10639603	.	-	.	ID=Os08t0276200-01;Name=Os08t0276200-01;Locus_id=Os08g0276200;CGSNL Gene Symbol=WRKY89;CGSNL Gene Name=WRKY GENE 89;Oryzabase Gene Symbol Synonym(s)=OsWRKY89;Note=Similar to WRKY transcription factor 44 (WRKY DNA-binding protein 44) (TRANSPARENT TESTA GLABRA 2).;Transcript_evidence=AK073491 (DDBJ%2C Best hit);ORF_evidence=Q6ZG02 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);NIAS_FLcDNA=J033042N14;Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=8959;TENOR=Os08t0276200-01
Chr08	irgsp1_rep	five_prime_UTR	10639487	10639603	.	-	.	Parent=Os08t0276200-01
Chr08	irgsp1_rep	CDS	10639052	10639486	.	-	0	Parent=Os08t0276200-01
Chr08	irgsp1_rep	CDS	10637548	10638212	.	-	0	Parent=Os08t0276200-01
Chr08	irgsp1_rep	mRNA	10655519	10658544	.	-	.	ID=Os08t0276400-01;Name=Os08t0276400-01;Locus_id=Os08g0276400;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK102100 (DDBJ%2C Best hit);ORF_evidence=A2YTC1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033083N01;Expression=AK102100;TENOR=Os08t0276400-01;KEGG=Os08t0276400-01
Chr08	irgsp1_rep	five_prime_UTR	10658261	10658544	.	-	.	Parent=Os08t0276400-01
Chr08	irgsp1_rep	CDS	10655777	10658260	.	-	0	Parent=Os08t0276400-01
Chr08	irgsp1_rep	three_prime_UTR	10655519	10655776	.	-	.	Parent=Os08t0276400-01
Chr08	irgsp1_rep	mRNA	10718581	10720791	.	+	.	ID=Os08t0277200-01;Name=Os08t0277200-01;Locus_id=Os08g0277200;CGSNL Gene Symbol=CCR18;CGSNL Gene Name=CINNAMOYL-COA REDUCTASE 18;Oryzabase Gene Symbol Synonym(s)=OsCCR%2C CCR%2C OsCCR18;Oryzabase Gene Name Synonym(s)=Cinnamoyl-CoA reductase%2C Cinnamoyl-CoA reductase 18;Note=Similar to Cinnamoyl-CoA reductase (EC 1.2.1.44).;Transcript_evidence=AK106439 (DDBJ%2C Best hit);ORF_evidence=Q5K591 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=002-103-D08;Oryzabase=21812;Expression=AK106439;TENOR=Os08t0277200-01;KEGG=Os08t0277200-01 (EC:1.2.1.44)
Chr08	irgsp1_rep	five_prime_UTR	10718581	10718721	.	+	.	Parent=Os08t0277200-01
Chr08	irgsp1_rep	CDS	10718722	10718887	.	+	0	Parent=Os08t0277200-01
Chr08	irgsp1_rep	CDS	10719571	10719728	.	+	2	Parent=Os08t0277200-01
Chr08	irgsp1_rep	CDS	10719837	10720541	.	+	0	Parent=Os08t0277200-01
Chr08	irgsp1_rep	three_prime_UTR	10720542	10720791	.	+	.	Parent=Os08t0277200-01
Chr08	irgsp1_rep	mRNA	10723268	10726789	.	-	.	ID=Os08t0277300-00;Name=Os08t0277300-00;Locus_id=Os08g0277300;Note=Similar to Flavonol 4-sulfotransferase.;Transcript_evidence=EU967654 (DDBJ);ORF_evidence=B6STJ6 (UniProt);GO=Molecular Function: sulfotransferase activity (GO:0008146);InterPro=Sulfotransferase domain (IPR000863);TENOR=Os08t0277300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	10726185	10726789	.	-	0	Parent=Os08t0277300-00
Chr08	irgsp1_rep	CDS	10723312	10723816	.	-	1	Parent=Os08t0277300-00
Chr08	irgsp1_rep	three_prime_UTR	10723268	10723311	.	-	.	Parent=Os08t0277300-00
Chr08	irgsp1_rep	mRNA	10759593	10763435	.	+	.	ID=Os08t0277900-01;Name=Os08t0277900-01;Locus_id=Os08g0277900;Note=Similar to Syntaxin 52 (AtSYP52).;Transcript_evidence=AK072643 (DDBJ%2C Best hit);ORF_evidence=B6T493 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Target SNARE coiled-coil domain (IPR000727);NIAS_FLcDNA=J023133F24;Expression=AK072643;TENOR=Os08t0277900-01;KEGG=Os08t0277900-01
Chr08	irgsp1_rep	five_prime_UTR	10759593	10759747	.	+	.	Parent=Os08t0277900-01
Chr08	irgsp1_rep	five_prime_UTR	10759847	10759962	.	+	.	Parent=Os08t0277900-01
Chr08	irgsp1_rep	five_prime_UTR	10761009	10761010	.	+	.	Parent=Os08t0277900-01
Chr08	irgsp1_rep	CDS	10761011	10761225	.	+	0	Parent=Os08t0277900-01
Chr08	irgsp1_rep	CDS	10762102	10762203	.	+	1	Parent=Os08t0277900-01
Chr08	irgsp1_rep	CDS	10762372	10762475	.	+	1	Parent=Os08t0277900-01
Chr08	irgsp1_rep	CDS	10762725	10762825	.	+	2	Parent=Os08t0277900-01
Chr08	irgsp1_rep	CDS	10762905	10762949	.	+	0	Parent=Os08t0277900-01
Chr08	irgsp1_rep	CDS	10763066	10763197	.	+	0	Parent=Os08t0277900-01
Chr08	irgsp1_rep	three_prime_UTR	10763198	10763435	.	+	.	Parent=Os08t0277900-01
Chr08	irgsp1_rep	mRNA	10767792	10771186	.	+	.	ID=Os08t0278100-01;Name=Os08t0278100-01;Locus_id=Os08g0278100;Note=Osteocrin domain containing protein.;Transcript_evidence=AK063626 (DDBJ%2C Best hit);ORF_evidence=B8B905 (UniProt);InterPro=Osteocrin (IPR021088);NIAS_FLcDNA=001-118-F02;Expression=AK063626;TENOR=Os08t0278100-01;KEGG=Os08t0278100-01
Chr08	irgsp1_rep	five_prime_UTR	10767792	10767849	.	+	.	Parent=Os08t0278100-01
Chr08	irgsp1_rep	CDS	10767850	10768100	.	+	0	Parent=Os08t0278100-01
Chr08	irgsp1_rep	CDS	10768867	10768916	.	+	1	Parent=Os08t0278100-01
Chr08	irgsp1_rep	CDS	10769023	10769075	.	+	2	Parent=Os08t0278100-01
Chr08	irgsp1_rep	CDS	10770234	10770590	.	+	0	Parent=Os08t0278100-01
Chr08	irgsp1_rep	three_prime_UTR	10770591	10771186	.	+	.	Parent=Os08t0278100-01
Chr08	irgsp1_rep	mRNA	10781685	10782141	.	+	.	ID=Os08t0278501-00;Name=Os08t0278501-00;Locus_id=Os08g0278501;Note=Hypothetical protein.;Transcript_evidence=EU948609 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0278501-00
Chr08	irgsp1_rep	five_prime_UTR	10781685	10781753	.	+	.	Parent=Os08t0278501-00
Chr08	irgsp1_rep	CDS	10781754	10782086	.	+	0	Parent=Os08t0278501-00
Chr08	irgsp1_rep	three_prime_UTR	10782087	10782141	.	+	.	Parent=Os08t0278501-00
Chr08	irgsp1_rep	mRNA	10796293	10803842	.	-	.	ID=Os08t0278600-01;Name=Os08t0278600-01;Locus_id=Os08g0278600;Note=Similar to complex 1 protein containing protein.;Transcript_evidence=AK110711 (DDBJ%2C Best hit);ORF_evidence=NP_001147276.1 (RefSeq);InterPro=Complex 1 LYR protein (IPR008011);NIAS_FLcDNA=002-170-D01;Expression=AK110711;TENOR=Os08t0278600-01;KEGG=Os08t0278600-01
Chr08	irgsp1_rep	five_prime_UTR	10803604	10803842	.	-	.	Parent=Os08t0278600-01
Chr08	irgsp1_rep	five_prime_UTR	10797112	10797139	.	-	.	Parent=Os08t0278600-01
Chr08	irgsp1_rep	CDS	10796821	10797111	.	-	0	Parent=Os08t0278600-01
Chr08	irgsp1_rep	three_prime_UTR	10796293	10796820	.	-	.	Parent=Os08t0278600-01
Chr08	irgsp1_rep	mRNA	10796069	10798540	.	-	.	ID=Os08t0278600-02;Name=Os08t0278600-02;Locus_id=Os08g0278600;Note=Complex 1 LYR protein family protein.;Transcript_evidence=AK111033 (DDBJ%2C Best hit);ORF_evidence=NP_001147276.1 (RefSeq);InterPro=Complex 1 LYR protein (IPR008011);NIAS_FLcDNA=002-174-H11;Expression=AK111033;TENOR=Os08t0278600-02;KEGG=Os08t0278600-02
Chr08	irgsp1_rep	five_prime_UTR	10798448	10798540	.	-	.	Parent=Os08t0278600-02
Chr08	irgsp1_rep	five_prime_UTR	10797112	10797139	.	-	.	Parent=Os08t0278600-02
Chr08	irgsp1_rep	CDS	10796848	10797111	.	-	0	Parent=Os08t0278600-02
Chr08	irgsp1_rep	CDS	10796242	10796259	.	-	0	Parent=Os08t0278600-02
Chr08	irgsp1_rep	three_prime_UTR	10796069	10796241	.	-	.	Parent=Os08t0278600-02
Chr08	irgsp1_rep	mRNA	10804531	10805024	.	+	.	ID=Os08t0278750-01;Name=Os08t0278750-01;Locus_id=Os08g0278750;Note=Similar to nucleotidyltransferase family protein.;Transcript_evidence=AK242881 (DDBJ%2C Best hit);ORF_evidence=NP_565611.1 (RefSeq);NIAS_FLcDNA=J090078N17;TENOR=Os08t0278750-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	10804531	10804532	.	+	.	Parent=Os08t0278750-01
Chr08	irgsp1_rep	CDS	10804533	10804769	.	+	0	Parent=Os08t0278750-01
Chr08	irgsp1_rep	three_prime_UTR	10804770	10805024	.	+	.	Parent=Os08t0278750-01
Chr08	irgsp1_rep	mRNA	10810395	10813333	.	-	.	ID=Os08t0278900-01;Name=Os08t0278900-01;Locus_id=Os08g0278900;Oryzabase Gene Name Synonym(s)=SDF2-like gene;Note=MIR domain containing protein.;Transcript_evidence=AK100085 (DDBJ%2C Best hit);ORF_evidence=NP_565585.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=MIR (IPR003608),MIR motif (IPR016093);NIAS_FLcDNA=J023002O21;Oryzabase=10090;Expression=AK100085;TENOR=Os08t0278900-01;KEGG=Os08t0278900-01 (EC:2.4.1.109)
Chr08	irgsp1_rep	five_prime_UTR	10813018	10813333	.	-	.	Parent=Os08t0278900-01
Chr08	irgsp1_rep	CDS	10812910	10813017	.	-	0	Parent=Os08t0278900-01
Chr08	irgsp1_rep	CDS	10812577	10812717	.	-	0	Parent=Os08t0278900-01
Chr08	irgsp1_rep	CDS	10811418	10811558	.	-	0	Parent=Os08t0278900-01
Chr08	irgsp1_rep	CDS	10811038	10811087	.	-	0	Parent=Os08t0278900-01
Chr08	irgsp1_rep	CDS	10810806	10810935	.	-	1	Parent=Os08t0278900-01
Chr08	irgsp1_rep	CDS	10810611	10810694	.	-	0	Parent=Os08t0278900-01
Chr08	irgsp1_rep	three_prime_UTR	10810395	10810610	.	-	.	Parent=Os08t0278900-01
Chr08	irgsp1_rep	mRNA	10817993	10821522	.	+	.	ID=Os08t0278966-00;Name=Os08t0278966-00;Locus_id=Os08g0278966;Note=Similar to predicted protein.;Transcript_evidence=FP095458 (DDBJ);ORF_evidence=E5GC24 (UniProt);InterPro=Splicing factor 3B subunit 5/RDS3 complex subunit 10 (IPR009846),Splicing factor 3B%2C subunit 5 (IPR017089);TENOR=Os08t0278966-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	10817993	10818090	.	+	.	Parent=Os08t0278966-00
Chr08	irgsp1_rep	CDS	10818091	10818096	.	+	0	Parent=Os08t0278966-00
Chr08	irgsp1_rep	CDS	10819480	10819565	.	+	0	Parent=Os08t0278966-00
Chr08	irgsp1_rep	CDS	10819645	10819768	.	+	1	Parent=Os08t0278966-00
Chr08	irgsp1_rep	CDS	10821305	10821352	.	+	0	Parent=Os08t0278966-00
Chr08	irgsp1_rep	three_prime_UTR	10821353	10821522	.	+	.	Parent=Os08t0278966-00
Chr08	irgsp1_rep	mRNA	10899946	10909610	.	+	.	ID=Os08t0280100-01;Name=Os08t0280100-01;Locus_id=Os08g0280100;CGSNL Gene Symbol=PAP23;CGSNL Gene Name=PURPLE ACID PHOSPHATASE 23;Oryzabase Gene Symbol Synonym(s)=OsPAP23;Oryzabase Gene Name Synonym(s)=purple acid phosphatase 23;Note=Similar to Phytase.;Transcript_evidence=AK119420 (DDBJ%2C Best hit);ORF_evidence=C4PKL5 (UniProt);GO=Molecular Function: acid phosphatase activity (GO:0003993),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: metal ion binding (GO:0046872);InterPro=Metallophosphoesterase domain (IPR004843),Purple acid phosphatase-like%2C N-terminal (IPR008963),Purple acid phosphatase%2C N-terminal (IPR015914);NIAS_FLcDNA=001-132-G11;Oryzabase=11393;Expression=AK119420;TENOR=Os08t0280100-01;KEGG=Os08t0280100-01
Chr08	irgsp1_rep	five_prime_UTR	10899946	10900061	.	+	.	Parent=Os08t0280100-01
Chr08	irgsp1_rep	CDS	10900062	10900927	.	+	0	Parent=Os08t0280100-01
Chr08	irgsp1_rep	CDS	10901467	10901690	.	+	1	Parent=Os08t0280100-01
Chr08	irgsp1_rep	CDS	10901860	10902050	.	+	2	Parent=Os08t0280100-01
Chr08	irgsp1_rep	CDS	10902424	10902705	.	+	0	Parent=Os08t0280100-01
Chr08	irgsp1_rep	CDS	10902975	10903120	.	+	0	Parent=Os08t0280100-01
Chr08	irgsp1_rep	CDS	10903256	10903415	.	+	1	Parent=Os08t0280100-01
Chr08	irgsp1_rep	three_prime_UTR	10903416	10903549	.	+	.	Parent=Os08t0280100-01
Chr08	irgsp1_rep	three_prime_UTR	10904071	10904166	.	+	.	Parent=Os08t0280100-01
Chr08	irgsp1_rep	three_prime_UTR	10908846	10909610	.	+	.	Parent=Os08t0280100-01
Chr08	irgsp1_rep	mRNA	10899990	10903805	.	+	.	ID=Os08t0280100-02;Name=Os08t0280100-02;Locus_id=Os08g0280100;CGSNL Gene Symbol=PAP23;CGSNL Gene Name=PURPLE ACID PHOSPHATASE 23;Oryzabase Gene Symbol Synonym(s)=OsPAP23;Oryzabase Gene Name Synonym(s)=purple acid phosphatase 23;Note=Similar to Phytase.;Transcript_evidence=AK072150 (DDBJ%2C Best hit);ORF_evidence=C4PKL5 (UniProt);GO=Molecular Function: acid phosphatase activity (GO:0003993),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: metal ion binding (GO:0046872);InterPro=Metallophosphoesterase domain (IPR004843),Purple acid phosphatase-like%2C N-terminal (IPR008963),Purple acid phosphatase%2C N-terminal (IPR015914);NIAS_FLcDNA=J013132L04;Oryzabase=11393;Expression=AK072150;TENOR=Os08t0280100-02;KEGG=Os08t0280100-02
Chr08	irgsp1_rep	five_prime_UTR	10899990	10900061	.	+	.	Parent=Os08t0280100-02
Chr08	irgsp1_rep	CDS	10900062	10900927	.	+	0	Parent=Os08t0280100-02
Chr08	irgsp1_rep	CDS	10901467	10901690	.	+	1	Parent=Os08t0280100-02
Chr08	irgsp1_rep	CDS	10901860	10902050	.	+	2	Parent=Os08t0280100-02
Chr08	irgsp1_rep	CDS	10902424	10902705	.	+	0	Parent=Os08t0280100-02
Chr08	irgsp1_rep	CDS	10902975	10903120	.	+	0	Parent=Os08t0280100-02
Chr08	irgsp1_rep	CDS	10903256	10903415	.	+	1	Parent=Os08t0280100-02
Chr08	irgsp1_rep	three_prime_UTR	10903416	10903805	.	+	.	Parent=Os08t0280100-02
Chr08	irgsp1_rep	mRNA	10900154	10903100	.	-	.	ID=Os08t0280125-00;Name=Os08t0280125-00;Locus_id=Os08g0280125;Note=Hypothetical protein.;Transcript_evidence=tplb0047d03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0280125-00
Chr08	irgsp1_rep	five_prime_UTR	10902967	10903100	.	-	.	Parent=Os08t0280125-00
Chr08	irgsp1_rep	five_prime_UTR	10902436	10902699	.	-	.	Parent=Os08t0280125-00
Chr08	irgsp1_rep	five_prime_UTR	10901849	10902062	.	-	.	Parent=Os08t0280125-00
Chr08	irgsp1_rep	five_prime_UTR	10901651	10901676	.	-	.	Parent=Os08t0280125-00
Chr08	irgsp1_rep	CDS	10901451	10901650	.	-	0	Parent=Os08t0280125-00
Chr08	irgsp1_rep	CDS	10900648	10900918	.	-	1	Parent=Os08t0280125-00
Chr08	irgsp1_rep	three_prime_UTR	10900154	10900647	.	-	.	Parent=Os08t0280125-00
Chr08	irgsp1_rep	mRNA	10906307	10906908	.	+	.	ID=Os08t0280150-00;Name=Os08t0280150-00;Locus_id=Os08g0280150;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B8B910 (UniProt);TENOR=Os08t0280150-00;KEGG=Os08t0280150-00
Chr08	irgsp1_rep	CDS	10906307	10906603	.	+	0	Parent=Os08t0280150-00
Chr08	irgsp1_rep	CDS	10906663	10906908	.	+	0	Parent=Os08t0280150-00
Chr08	irgsp1_rep	mRNA	10922470	10932858	.	+	.	ID=Os08t0280200-01;Name=Os08t0280200-01;Locus_id=Os08g0280200;Oryzabase Gene Symbol Synonym(s)=OsFH6%2C FH6;Oryzabase Gene Name Synonym(s)=formin homology 6%2C forming family protein 6%2C FH2 protein 6%2C FH2 domain protein 6;Note=Tensin phosphatase%2C C2 domain domain containing protein.;Transcript_evidence=AK069036 (DDBJ%2C Best hit);ORF_evidence=Q6ZCX3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium/lipid-binding domain%2C CaLB (IPR008973),Tensin phosphatase%2C C2 domain (IPR014020);NIAS_FLcDNA=J023004O07;Oryzabase=21777;Expression=AK069036;TENOR=Os08t0280200-01;KEGG=Os08t0280200-01
Chr08	irgsp1_rep	five_prime_UTR	10922470	10922717	.	+	.	Parent=Os08t0280200-01
Chr08	irgsp1_rep	CDS	10922718	10922790	.	+	0	Parent=Os08t0280200-01
Chr08	irgsp1_rep	CDS	10923673	10924373	.	+	2	Parent=Os08t0280200-01
Chr08	irgsp1_rep	CDS	10924564	10924645	.	+	0	Parent=Os08t0280200-01
Chr08	irgsp1_rep	CDS	10926156	10926745	.	+	2	Parent=Os08t0280200-01
Chr08	irgsp1_rep	three_prime_UTR	10926746	10926911	.	+	.	Parent=Os08t0280200-01
Chr08	irgsp1_rep	three_prime_UTR	10926997	10927123	.	+	.	Parent=Os08t0280200-01
Chr08	irgsp1_rep	three_prime_UTR	10928431	10928502	.	+	.	Parent=Os08t0280200-01
Chr08	irgsp1_rep	three_prime_UTR	10928833	10928931	.	+	.	Parent=Os08t0280200-01
Chr08	irgsp1_rep	three_prime_UTR	10929036	10929077	.	+	.	Parent=Os08t0280200-01
Chr08	irgsp1_rep	three_prime_UTR	10929289	10929369	.	+	.	Parent=Os08t0280200-01
Chr08	irgsp1_rep	three_prime_UTR	10929471	10929521	.	+	.	Parent=Os08t0280200-01
Chr08	irgsp1_rep	three_prime_UTR	10929607	10929688	.	+	.	Parent=Os08t0280200-01
Chr08	irgsp1_rep	three_prime_UTR	10930083	10930177	.	+	.	Parent=Os08t0280200-01
Chr08	irgsp1_rep	three_prime_UTR	10931081	10931152	.	+	.	Parent=Os08t0280200-01
Chr08	irgsp1_rep	three_prime_UTR	10931249	10931365	.	+	.	Parent=Os08t0280200-01
Chr08	irgsp1_rep	three_prime_UTR	10931518	10931586	.	+	.	Parent=Os08t0280200-01
Chr08	irgsp1_rep	three_prime_UTR	10931849	10931915	.	+	.	Parent=Os08t0280200-01
Chr08	irgsp1_rep	three_prime_UTR	10932051	10932466	.	+	.	Parent=Os08t0280200-01
Chr08	irgsp1_rep	three_prime_UTR	10932591	10932858	.	+	.	Parent=Os08t0280200-01
Chr08	irgsp1_rep	mRNA	10925223	10932864	.	+	.	ID=Os08t0280200-02;Name=Os08t0280200-02;Locus_id=Os08g0280200;Oryzabase Gene Symbol Synonym(s)=OsFH6%2C FH6;Oryzabase Gene Name Synonym(s)=formin homology 6%2C forming family protein 6%2C FH2 protein 6%2C FH2 domain protein 6;Note=Similar to Formin-like protein 6.;Transcript_evidence=AK100610 (DDBJ%2C Best hit);ORF_evidence=Q6ZCX3 (UniProt);GO=Biological Process: cellular component organization (GO:0016043),Biological Process: actin cytoskeleton organization (GO:0030036),Molecular Function: actin binding (GO:0003779);InterPro=Actin-binding FH2/DRF autoregulatory (IPR003104),Actin-binding FH2 (IPR015425);NIAS_FLcDNA=J023107L11;Oryzabase=21777;TENOR=Os08t0280200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	10925223	10925284	.	+	.	Parent=Os08t0280200-02
Chr08	irgsp1_rep	CDS	10925285	10925693	.	+	0	Parent=Os08t0280200-02
Chr08	irgsp1_rep	CDS	10925779	10925916	.	+	2	Parent=Os08t0280200-02
Chr08	irgsp1_rep	CDS	10925993	10926911	.	+	2	Parent=Os08t0280200-02
Chr08	irgsp1_rep	CDS	10926997	10927123	.	+	1	Parent=Os08t0280200-02
Chr08	irgsp1_rep	CDS	10928431	10928502	.	+	0	Parent=Os08t0280200-02
Chr08	irgsp1_rep	CDS	10928833	10928931	.	+	0	Parent=Os08t0280200-02
Chr08	irgsp1_rep	CDS	10929036	10929077	.	+	0	Parent=Os08t0280200-02
Chr08	irgsp1_rep	CDS	10929289	10929369	.	+	0	Parent=Os08t0280200-02
Chr08	irgsp1_rep	CDS	10929471	10929521	.	+	0	Parent=Os08t0280200-02
Chr08	irgsp1_rep	CDS	10929607	10929688	.	+	0	Parent=Os08t0280200-02
Chr08	irgsp1_rep	CDS	10930083	10930177	.	+	2	Parent=Os08t0280200-02
Chr08	irgsp1_rep	CDS	10931081	10931152	.	+	0	Parent=Os08t0280200-02
Chr08	irgsp1_rep	CDS	10931249	10931365	.	+	0	Parent=Os08t0280200-02
Chr08	irgsp1_rep	CDS	10931518	10931586	.	+	0	Parent=Os08t0280200-02
Chr08	irgsp1_rep	CDS	10931849	10931915	.	+	0	Parent=Os08t0280200-02
Chr08	irgsp1_rep	CDS	10932051	10932292	.	+	2	Parent=Os08t0280200-02
Chr08	irgsp1_rep	three_prime_UTR	10932293	10932466	.	+	.	Parent=Os08t0280200-02
Chr08	irgsp1_rep	three_prime_UTR	10932591	10932864	.	+	.	Parent=Os08t0280200-02
Chr08	irgsp1_rep	mRNA	10932623	10936171	.	+	.	ID=Os08t0280200-03;Name=Os08t0280200-03;Locus_id=Os08g0280200;Oryzabase Gene Symbol Synonym(s)=OsFH6%2C FH6;Oryzabase Gene Name Synonym(s)=formin homology 6%2C forming family protein 6%2C FH2 protein 6%2C FH2 domain protein 6;Note=Hypothetical conserved gene.;Transcript_evidence=AK119299 (DDBJ%2C Best hit);ORF_evidence=B9G024 (UniProt);NIAS_FLcDNA=001-130-E10;Oryzabase=21777;Expression=AK119299;TENOR=Os08t0280200-03;KEGG=Os08t0280200-03
Chr08	irgsp1_rep	five_prime_UTR	10932623	10933745	.	+	.	Parent=Os08t0280200-03
Chr08	irgsp1_rep	CDS	10933746	10934132	.	+	0	Parent=Os08t0280200-03
Chr08	irgsp1_rep	three_prime_UTR	10934133	10935152	.	+	.	Parent=Os08t0280200-03
Chr08	irgsp1_rep	three_prime_UTR	10935649	10936171	.	+	.	Parent=Os08t0280200-03
Chr08	irgsp1_rep	mRNA	10938444	10945133	.	+	.	ID=Os08t0280300-00;Name=Os08t0280300-00;Locus_id=Os08g0280300;CGSNL Gene Symbol=YSL17;CGSNL Gene Name=YELLOW STRIP-LIKE GENE 17;Oryzabase Gene Symbol Synonym(s)=OsYSL17%2C OsYs18;Oryzabase Gene Name Synonym(s)=rice YSL (yellow stripe-like) gene 17%2C Probable metal-nicotianamine transporter YSL17%2C Protein YELLOW STRIPE LIKE 17%2C yellow stripe 1-like transporter 17;Note=Hypothetical conserved gene.;Transcript_evidence=AB190925 (DDBJ%2C Best hit);ORF_evidence=B8A2G4 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085);InterPro=Oligopeptide transporter OPT superfamily (IPR004813);Oryzabase=8358;TENOR=Os08t0280300-00;KEGG=Os08t0280300-00
Chr08	irgsp1_rep	CDS	10938444	10938633	.	+	0	Parent=Os08t0280300-00
Chr08	irgsp1_rep	CDS	10943028	10943289	.	+	2	Parent=Os08t0280300-00
Chr08	irgsp1_rep	CDS	10943500	10943634	.	+	1	Parent=Os08t0280300-00
Chr08	irgsp1_rep	CDS	10943810	10945133	.	+	1	Parent=Os08t0280300-00
Chr08	irgsp1_rep	mRNA	10962154	10962711	.	-	.	ID=Os08t0280501-00;Name=Os08t0280501-00;Locus_id=Os08g0280501;Note=Non-protein coding transcript.;Transcript_evidence=EU941026 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0280501-00
Chr08	irgsp1_rep	exon	10962154	10962711	.	-	.	Parent=Os08t0280501-00
Chr08	irgsp1_rep	mRNA	10962195	10967484	.	+	.	ID=Os08t0280600-01;Name=Os08t0280600-01;Locus_id=Os08g0280600;Note=Reticulon domain containing protein.;Transcript_evidence=AK060042 (DDBJ%2C Best hit);ORF_evidence=B9G026 (UniProt);GO=Cellular Component: endoplasmic reticulum (GO:0005783);InterPro=Reticulon (IPR003388);NIAS_FLcDNA=006-304-F01;TENOR=Os08t0280600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	10962195	10962196	.	+	.	Parent=Os08t0280600-01
Chr08	irgsp1_rep	CDS	10962197	10962258	.	+	0	Parent=Os08t0280600-01
Chr08	irgsp1_rep	CDS	10962375	10962449	.	+	1	Parent=Os08t0280600-01
Chr08	irgsp1_rep	CDS	10962546	10962708	.	+	1	Parent=Os08t0280600-01
Chr08	irgsp1_rep	CDS	10962844	10962913	.	+	0	Parent=Os08t0280600-01
Chr08	irgsp1_rep	CDS	10963246	10963311	.	+	2	Parent=Os08t0280600-01
Chr08	irgsp1_rep	CDS	10966491	10966613	.	+	2	Parent=Os08t0280600-01
Chr08	irgsp1_rep	CDS	10967025	10967308	.	+	2	Parent=Os08t0280600-01
Chr08	irgsp1_rep	three_prime_UTR	10967309	10967484	.	+	.	Parent=Os08t0280600-01
Chr08	irgsp1_rep	mRNA	11030245	11031588	.	+	.	ID=Os08t0281500-00;Name=Os08t0281500-00;Locus_id=Os08g0281500;Note=DNA-binding pseudobarrel domain domain containing protein.;Transcript_evidence=AK376261 (DDBJ);ORF_evidence=Q6ZIY5 (UniProt);InterPro=DNA-binding pseudobarrel domain (IPR015300);TENOR=Os08t0281500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	11030245	11030871	.	+	0	Parent=Os08t0281500-00
Chr08	irgsp1_rep	CDS	11030971	11031588	.	+	0	Parent=Os08t0281500-00
Chr08	irgsp1_rep	mRNA	11035931	11037288	.	-	.	ID=Os08t0281600-00;Name=Os08t0281600-00;Locus_id=Os08g0281600;Oryzabase Gene Symbol Synonym(s)=OsFBX283%2C OsKIX_6%2C OsFbox434%2C Os_F0157;Oryzabase Gene Name Synonym(s)=KIX domain protein 6%2C F-box protein 283%2C F-box protein 434;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK336057 (DDBJ);ORF_evidence=B8B9B3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=13460;TENOR=Os08t0281600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	11036509	11037288	.	-	0	Parent=Os08t0281600-00
Chr08	irgsp1_rep	CDS	11036253	11036405	.	-	0	Parent=Os08t0281600-00
Chr08	irgsp1_rep	CDS	11036102	11036131	.	-	0	Parent=Os08t0281600-00
Chr08	irgsp1_rep	three_prime_UTR	11035931	11036101	.	-	.	Parent=Os08t0281600-00
Chr08	irgsp1_rep	mRNA	11055447	11062439	.	-	.	ID=Os08t0282000-01;Name=Os08t0282000-01;Locus_id=Os08g0282000;Note=Tetraspanin domain containing protein.;Transcript_evidence=AK101411 (DDBJ%2C Best hit);ORF_evidence=NP_001150827.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Tetraspanin (IPR018499);NIAS_FLcDNA=J033037J09;Expression=AK101411;TENOR=Os08t0282000-01;KEGG=Os08t0282000-01
Chr08	irgsp1_rep	five_prime_UTR	11062300	11062439	.	-	.	Parent=Os08t0282000-01
Chr08	irgsp1_rep	five_prime_UTR	11062133	11062183	.	-	.	Parent=Os08t0282000-01
Chr08	irgsp1_rep	CDS	11061885	11062132	.	-	0	Parent=Os08t0282000-01
Chr08	irgsp1_rep	CDS	11061334	11061433	.	-	1	Parent=Os08t0282000-01
Chr08	irgsp1_rep	CDS	11060682	11060762	.	-	0	Parent=Os08t0282000-01
Chr08	irgsp1_rep	CDS	11060482	11060586	.	-	0	Parent=Os08t0282000-01
Chr08	irgsp1_rep	CDS	11055971	11056183	.	-	0	Parent=Os08t0282000-01
Chr08	irgsp1_rep	CDS	11055785	11055892	.	-	0	Parent=Os08t0282000-01
Chr08	irgsp1_rep	three_prime_UTR	11055447	11055784	.	-	.	Parent=Os08t0282000-01
Chr08	irgsp1_rep	mRNA	11064461	11066098	.	+	.	ID=Os08t0282100-00;Name=Os08t0282100-00;Locus_id=Os08g0282100;Note=DNA-binding pseudobarrel domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001175496.1 (RefSeq);InterPro=DNA-binding pseudobarrel domain (IPR015300);TENOR=Os08t0282100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	11064461	11066098	.	+	0	Parent=Os08t0282100-00
Chr08	irgsp1_rep	mRNA	11074545	11078779	.	+	.	ID=Os08t0282200-01;Name=Os08t0282200-01;Locus_id=Os08g0282200;Note=Hypothetical protein.;Transcript_evidence=AK107014 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-120-F11;Expression=AK107014;TENOR=Os08t0282200-01;KEGG=Os08t0282200-01
Chr08	irgsp1_rep	five_prime_UTR	11074545	11074631	.	+	.	Parent=Os08t0282200-01
Chr08	irgsp1_rep	five_prime_UTR	11075446	11075564	.	+	.	Parent=Os08t0282200-01
Chr08	irgsp1_rep	five_prime_UTR	11076743	11078271	.	+	.	Parent=Os08t0282200-01
Chr08	irgsp1_rep	CDS	11078272	11078643	.	+	0	Parent=Os08t0282200-01
Chr08	irgsp1_rep	three_prime_UTR	11078644	11078779	.	+	.	Parent=Os08t0282200-01
Chr08	irgsp1_rep	mRNA	11102726	11108224	.	+	.	ID=Os08t0282400-01;Name=Os08t0282400-01;Locus_id=Os08g0282400;Note=Similar to Alpha-SNAP (Fragment).;Transcript_evidence=AK100935 (DDBJ%2C Best hit);ORF_evidence=NP_001149191.1 (RefSeq);GO=Biological Process: intracellular protein transport (GO:0006886),Molecular Function: binding (GO:0005488);InterPro=NSF attachment protein (IPR000744),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J023136I24;Expression=AK100935;TENOR=Os08t0282400-01;KEGG=Os08t0282400-01
Chr08	irgsp1_rep	five_prime_UTR	11102726	11102861	.	+	.	Parent=Os08t0282400-01
Chr08	irgsp1_rep	CDS	11102862	11103006	.	+	0	Parent=Os08t0282400-01
Chr08	irgsp1_rep	CDS	11103885	11103934	.	+	2	Parent=Os08t0282400-01
Chr08	irgsp1_rep	CDS	11104024	11104096	.	+	0	Parent=Os08t0282400-01
Chr08	irgsp1_rep	CDS	11105464	11105543	.	+	2	Parent=Os08t0282400-01
Chr08	irgsp1_rep	CDS	11105696	11105847	.	+	0	Parent=Os08t0282400-01
Chr08	irgsp1_rep	CDS	11106995	11107154	.	+	1	Parent=Os08t0282400-01
Chr08	irgsp1_rep	CDS	11107228	11107275	.	+	0	Parent=Os08t0282400-01
Chr08	irgsp1_rep	CDS	11107460	11107540	.	+	0	Parent=Os08t0282400-01
Chr08	irgsp1_rep	CDS	11107859	11107939	.	+	0	Parent=Os08t0282400-01
Chr08	irgsp1_rep	three_prime_UTR	11107940	11108224	.	+	.	Parent=Os08t0282400-01
Chr08	irgsp1_rep	mRNA	11126808	11130613	.	-	.	ID=Os08t0282500-01;Name=Os08t0282500-01;Locus_id=Os08g0282500;Oryzabase Gene Symbol Synonym(s)=OsWD40-157;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK111905 (DDBJ%2C Best hit),AK112074 (DDBJ%2C Best hit);ORF_evidence=B7F4I5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J033058D01,001-123-A10;Oryzabase=10838;Expression=AK111905;TENOR=Os08t0282500-01;KEGG=Os08t0282500-01
Chr08	irgsp1_rep	five_prime_UTR	11130540	11130613	.	-	.	Parent=Os08t0282500-01
Chr08	irgsp1_rep	CDS	11129901	11130539	.	-	0	Parent=Os08t0282500-01
Chr08	irgsp1_rep	CDS	11128788	11129191	.	-	0	Parent=Os08t0282500-01
Chr08	irgsp1_rep	CDS	11127377	11127475	.	-	1	Parent=Os08t0282500-01
Chr08	irgsp1_rep	CDS	11127061	11127292	.	-	1	Parent=Os08t0282500-01
Chr08	irgsp1_rep	three_prime_UTR	11126808	11127060	.	-	.	Parent=Os08t0282500-01
Chr08	irgsp1_rep	mRNA	11142234	11142856	.	-	.	ID=Os08t0282700-01;Name=Os08t0282700-01;Locus_id=Os08g0282700;Note=Hypothetical gene.;Transcript_evidence=AK071808 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023112J03;Expression=AK071808;TENOR=Os08t0282700-01;KEGG=Os08t0282700-01
Chr08	irgsp1_rep	five_prime_UTR	11142856	11142856	.	-	.	Parent=Os08t0282700-01
Chr08	irgsp1_rep	CDS	11142529	11142855	.	-	0	Parent=Os08t0282700-01
Chr08	irgsp1_rep	three_prime_UTR	11142234	11142528	.	-	.	Parent=Os08t0282700-01
Chr08	irgsp1_rep	mRNA	11158562	11159207	.	-	.	ID=Os08t0283000-00;Name=Os08t0283000-00;Locus_id=Os08g0283000;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);InterPro=Ribonuclease H1%2C N-terminal (IPR011320);TENOR=Os08t0283000-00
Chr08	irgsp1_rep	five_prime_UTR	11159204	11159207	.	-	.	Parent=Os08t0283000-00
Chr08	irgsp1_rep	CDS	11158751	11159203	.	-	0	Parent=Os08t0283000-00
Chr08	irgsp1_rep	three_prime_UTR	11158562	11158750	.	-	.	Parent=Os08t0283000-00
Chr08	irgsp1_rep	mRNA	11170433	11171225	.	+	.	ID=Os08t0283300-00;Name=Os08t0283300-00;Locus_id=Os08g0283300;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);InterPro=Ribonuclease H1%2C N-terminal (IPR011320);TENOR=Os08t0283300-00
Chr08	irgsp1_rep	five_prime_UTR	11170433	11170436	.	+	.	Parent=Os08t0283300-00
Chr08	irgsp1_rep	CDS	11170437	11171225	.	+	0	Parent=Os08t0283300-00
Chr08	irgsp1_rep	mRNA	11178543	11179368	.	+	.	ID=Os08t0283600-00;Name=Os08t0283600-00;Locus_id=Os08g0283600;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);InterPro=Ribonuclease H1%2C N-terminal (IPR011320);TENOR=Os08t0283600-00
Chr08	irgsp1_rep	five_prime_UTR	11178543	11178546	.	+	.	Parent=Os08t0283600-00
Chr08	irgsp1_rep	CDS	11178547	11179368	.	+	0	Parent=Os08t0283600-00
Chr08	irgsp1_rep	mRNA	11201775	11202600	.	-	.	ID=Os08t0283900-00;Name=Os08t0283900-00;Locus_id=Os08g0283900;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);InterPro=Ribonuclease H1%2C N-terminal (IPR011320);TENOR=Os08t0283900-00
Chr08	irgsp1_rep	five_prime_UTR	11202597	11202600	.	-	.	Parent=Os08t0283900-00
Chr08	irgsp1_rep	CDS	11201775	11202596	.	-	0	Parent=Os08t0283900-00
Chr08	irgsp1_rep	mRNA	11209874	11210515	.	+	.	ID=Os08t0284200-00;Name=Os08t0284200-00;Locus_id=Os08g0284200;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);InterPro=Ribonuclease H1%2C N-terminal (IPR011320);TENOR=Os08t0284200-00
Chr08	irgsp1_rep	five_prime_UTR	11209874	11209877	.	+	.	Parent=Os08t0284200-00
Chr08	irgsp1_rep	CDS	11209878	11210504	.	+	0	Parent=Os08t0284200-00
Chr08	irgsp1_rep	three_prime_UTR	11210505	11210515	.	+	.	Parent=Os08t0284200-00
Chr08	irgsp1_rep	mRNA	11245647	11246472	.	+	.	ID=Os08t0284500-00;Name=Os08t0284500-00;Locus_id=Os08g0284500;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);InterPro=Ribonuclease H1%2C N-terminal (IPR011320);TENOR=Os08t0284500-00
Chr08	irgsp1_rep	five_prime_UTR	11245647	11245650	.	+	.	Parent=Os08t0284500-00
Chr08	irgsp1_rep	CDS	11245651	11246472	.	+	0	Parent=Os08t0284500-00
Chr08	irgsp1_rep	mRNA	11258610	11260127	.	-	.	ID=Os08t0285100-00;Name=Os08t0285100-00;Locus_id=Os08g0285100;Note=Conserved hypothetical protein.;Transcript_evidence=AK357994 (DDBJ);ORF_evidence=NP_001061448.1 (RefSeq);TENOR=Os08t0285100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	11259475	11260127	.	-	0	Parent=Os08t0285100-00
Chr08	irgsp1_rep	CDS	11258610	11259099	.	-	1	Parent=Os08t0285100-00
Chr08	irgsp1_rep	mRNA	11263369	11266927	.	+	.	ID=Os08t0285200-01;Name=Os08t0285200-01;Locus_id=Os08g0285200;Oryzabase Gene Symbol Synonym(s)=OsWD40-158;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK112065 (DDBJ%2C Best hit);ORF_evidence=Q6YZ25 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=001-115-E05;Oryzabase=10839;Expression=AK112065;TENOR=Os08t0285200-01;KEGG=Os08t0285200-01
Chr08	irgsp1_rep	CDS	11263369	11264100	.	+	0	Parent=Os08t0285200-01
Chr08	irgsp1_rep	CDS	11265124	11265527	.	+	0	Parent=Os08t0285200-01
Chr08	irgsp1_rep	CDS	11266067	11266165	.	+	1	Parent=Os08t0285200-01
Chr08	irgsp1_rep	CDS	11266253	11266484	.	+	1	Parent=Os08t0285200-01
Chr08	irgsp1_rep	three_prime_UTR	11266485	11266927	.	+	.	Parent=Os08t0285200-01
Chr08	irgsp1_rep	mRNA	11267321	11268866	.	-	.	ID=Os08t0285301-01;Name=Os08t0285301-01;Locus_id=Os08g0285301;Note=Conserved hypothetical protein.;Transcript_evidence=AK241802 (DDBJ%2C Best hit);ORF_evidence=B9G031 (UniProt);NIAS_FLcDNA=J065208K15;TENOR=Os08t0285301-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	11268850	11268866	.	-	.	Parent=Os08t0285301-01
Chr08	irgsp1_rep	CDS	11268376	11268849	.	-	0	Parent=Os08t0285301-01
Chr08	irgsp1_rep	three_prime_UTR	11267321	11268375	.	-	.	Parent=Os08t0285301-01
Chr08	irgsp1_rep	mRNA	11267744	11268082	.	+	.	ID=Os08t0285350-00;Name=Os08t0285350-00;Locus_id=Os08g0285350;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A3BRJ1 (UniProt);TENOR=Os08t0285350-00;KEGG=Os08t0285350-00
Chr08	irgsp1_rep	CDS	11267744	11268082	.	+	0	Parent=Os08t0285350-00
Chr08	irgsp1_rep	mRNA	11274674	11279209	.	-	.	ID=Os08t0285600-01;Name=Os08t0285600-01;Locus_id=Os08g0285600;Note=Similar to phytosulfokine receptor.;Transcript_evidence=AK064847 (DDBJ%2C Best hit);ORF_evidence=NP_001148336.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013000G15;TENOR=Os08t0285600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	11278813	11279209	.	-	.	Parent=Os08t0285600-01
Chr08	irgsp1_rep	CDS	11278638	11278812	.	-	0	Parent=Os08t0285600-01
Chr08	irgsp1_rep	CDS	11277769	11277927	.	-	2	Parent=Os08t0285600-01
Chr08	irgsp1_rep	CDS	11277418	11277665	.	-	2	Parent=Os08t0285600-01
Chr08	irgsp1_rep	CDS	11277197	11277329	.	-	0	Parent=Os08t0285600-01
Chr08	irgsp1_rep	CDS	11277042	11277105	.	-	2	Parent=Os08t0285600-01
Chr08	irgsp1_rep	CDS	11276837	11276933	.	-	1	Parent=Os08t0285600-01
Chr08	irgsp1_rep	CDS	11276628	11276730	.	-	0	Parent=Os08t0285600-01
Chr08	irgsp1_rep	CDS	11276380	11276540	.	-	2	Parent=Os08t0285600-01
Chr08	irgsp1_rep	three_prime_UTR	11275413	11276379	.	-	.	Parent=Os08t0285600-01
Chr08	irgsp1_rep	three_prime_UTR	11274674	11275337	.	-	.	Parent=Os08t0285600-01
Chr08	irgsp1_rep	mRNA	11310539	11311944	.	+	.	ID=Os08t0286100-00;Name=Os08t0286100-00;Locus_id=Os08g0286100;Oryzabase Gene Symbol Synonym(s)=OsPLL11%2C PLL11;Oryzabase Gene Name Synonym(s)=Pectate lyase-like 11;Note=Similar to predicted protein.;Transcript_evidence=BT087310 (DDBJ);ORF_evidence=XP_002873391.1 (RefSeq);InterPro=Pectate lyase/Amb allergen (IPR002022),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),AmbAllergen (IPR018082);Oryzabase=22496;TENOR=Os08t0286100-00;KEGG=Os08t0286100-00 (EC:4.2.2.2)
Chr08	irgsp1_rep	CDS	11310539	11311455	.	+	0	Parent=Os08t0286100-00
Chr08	irgsp1_rep	CDS	11311563	11311941	.	+	1	Parent=Os08t0286100-00
Chr08	irgsp1_rep	three_prime_UTR	11311942	11311944	.	+	.	Parent=Os08t0286100-00
Chr08	irgsp1_rep	mRNA	11321679	11323563	.	+	.	ID=Os08t0286500-01;Name=Os08t0286500-01;Locus_id=Os08g0286500;Oryzabase Gene Symbol Synonym(s)=OsEnS-119;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 119;Note=Hypothetical conserved gene.;Transcript_evidence=AK106562 (DDBJ%2C Best hit);ORF_evidence=B9G033 (UniProt);NIAS_FLcDNA=002-110-C07;Oryzabase=18414;Expression=AK106562;TENOR=Os08t0286500-01;KEGG=Os08t0286500-01
Chr08	irgsp1_rep	five_prime_UTR	11321679	11323253	.	+	.	Parent=Os08t0286500-01
Chr08	irgsp1_rep	CDS	11323254	11323436	.	+	0	Parent=Os08t0286500-01
Chr08	irgsp1_rep	three_prime_UTR	11323437	11323563	.	+	.	Parent=Os08t0286500-01
Chr08	irgsp1_rep	mRNA	11374384	11375591	.	+	.	ID=Os08t0287200-01;Name=Os08t0287200-01;Locus_id=Os08g0287200;Note=Hypothetical conserved gene.;Transcript_evidence=AK242000 (DDBJ%2C Best hit);ORF_evidence=B9G033 (UniProt);NIAS_FLcDNA=J075101A15;TENOR=Os08t0287200-01;KEGG=Os08t0287200-01
Chr08	irgsp1_rep	five_prime_UTR	11374384	11374514	.	+	.	Parent=Os08t0287200-01
Chr08	irgsp1_rep	five_prime_UTR	11375138	11375282	.	+	.	Parent=Os08t0287200-01
Chr08	irgsp1_rep	CDS	11375283	11375468	.	+	0	Parent=Os08t0287200-01
Chr08	irgsp1_rep	three_prime_UTR	11375469	11375591	.	+	.	Parent=Os08t0287200-01
Chr08	irgsp1_rep	mRNA	11399711	11402862	.	-	.	ID=Os08t0287800-00;Name=Os08t0287800-00;Locus_id=Os08g0287800;Note=Hypothetical conserved gene.;Transcript_evidence=CT835970 (DDBJ%2C Best hit);ORF_evidence=NP_001061452.1 (RefSeq);TENOR=Os08t0287800-00;KEGG=Os08t0287800-00
Chr08	irgsp1_rep	five_prime_UTR	11402511	11402862	.	-	.	Parent=Os08t0287800-00
Chr08	irgsp1_rep	five_prime_UTR	11402339	11402422	.	-	.	Parent=Os08t0287800-00
Chr08	irgsp1_rep	five_prime_UTR	11402165	11402261	.	-	.	Parent=Os08t0287800-00
Chr08	irgsp1_rep	five_prime_UTR	11401654	11401675	.	-	.	Parent=Os08t0287800-00
Chr08	irgsp1_rep	CDS	11401484	11401653	.	-	0	Parent=Os08t0287800-00
Chr08	irgsp1_rep	CDS	11400096	11400111	.	-	1	Parent=Os08t0287800-00
Chr08	irgsp1_rep	three_prime_UTR	11399711	11400095	.	-	.	Parent=Os08t0287800-00
Chr08	irgsp1_rep	mRNA	11404746	11409804	.	+	.	ID=Os08t0288000-01;Name=Os08t0288000-01;Locus_id=Os08g0288000;Note=Conserved hypothetical protein.;Transcript_evidence=AK099411 (DDBJ%2C Best hit);ORF_evidence=Q53JP1 (UniProt);NIAS_FLcDNA=J013004F22;Expression=AK099411;TENOR=Os08t0288000-01;KEGG=Os08t0288000-01
Chr08	irgsp1_rep	five_prime_UTR	11404746	11404966	.	+	.	Parent=Os08t0288000-01
Chr08	irgsp1_rep	five_prime_UTR	11405064	11405324	.	+	.	Parent=Os08t0288000-01
Chr08	irgsp1_rep	five_prime_UTR	11405435	11405682	.	+	.	Parent=Os08t0288000-01
Chr08	irgsp1_rep	five_prime_UTR	11406954	11407052	.	+	.	Parent=Os08t0288000-01
Chr08	irgsp1_rep	five_prime_UTR	11407173	11407257	.	+	.	Parent=Os08t0288000-01
Chr08	irgsp1_rep	five_prime_UTR	11407436	11408046	.	+	.	Parent=Os08t0288000-01
Chr08	irgsp1_rep	five_prime_UTR	11408229	11408365	.	+	.	Parent=Os08t0288000-01
Chr08	irgsp1_rep	five_prime_UTR	11408513	11409383	.	+	.	Parent=Os08t0288000-01
Chr08	irgsp1_rep	CDS	11409384	11409677	.	+	0	Parent=Os08t0288000-01
Chr08	irgsp1_rep	three_prime_UTR	11409678	11409804	.	+	.	Parent=Os08t0288000-01
Chr08	irgsp1_rep	mRNA	11407705	11409808	.	+	.	ID=Os08t0288000-02;Name=Os08t0288000-02;Locus_id=Os08g0288000;Note=Conserved hypothetical protein.;Transcript_evidence=AK099655 (DDBJ%2C Best hit);ORF_evidence=Q53JP1 (UniProt);NIAS_FLcDNA=J013066C07;Expression=AK099655;TENOR=Os08t0288000-02;KEGG=Os08t0288000-02
Chr08	irgsp1_rep	five_prime_UTR	11407705	11409383	.	+	.	Parent=Os08t0288000-02
Chr08	irgsp1_rep	CDS	11409384	11409677	.	+	0	Parent=Os08t0288000-02
Chr08	irgsp1_rep	three_prime_UTR	11409678	11409808	.	+	.	Parent=Os08t0288000-02
Chr08	irgsp1_rep	mRNA	11437989	11440989	.	+	.	ID=Os08t0288050-01;Name=Os08t0288050-01;Locus_id=Os08g0288050;Note=Hypothetical conserved gene.;Transcript_evidence=AK243089 (DDBJ%2C Best hit);ORF_evidence=NP_001057646.1 (RefSeq);NIAS_FLcDNA=J100022L04;TENOR=Os08t0288050-01;KEGG=Os08t0288050-01
Chr08	irgsp1_rep	five_prime_UTR	11437989	11438127	.	+	.	Parent=Os08t0288050-01
Chr08	irgsp1_rep	CDS	11438128	11438288	.	+	0	Parent=Os08t0288050-01
Chr08	irgsp1_rep	CDS	11438378	11438678	.	+	1	Parent=Os08t0288050-01
Chr08	irgsp1_rep	three_prime_UTR	11438679	11438925	.	+	.	Parent=Os08t0288050-01
Chr08	irgsp1_rep	three_prime_UTR	11440565	11440634	.	+	.	Parent=Os08t0288050-01
Chr08	irgsp1_rep	three_prime_UTR	11440736	11440989	.	+	.	Parent=Os08t0288050-01
Chr08	irgsp1_rep	mRNA	11442670	11453068	.	-	.	ID=Os08t0288200-01;Name=Os08t0288200-01;Locus_id=Os08g0288200;Note=Adenylate kinase family protein.;Transcript_evidence=AK070372 (DDBJ%2C Best hit);ORF_evidence=XP_002868408.1 (RefSeq);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Biological Process: nucleotide phosphorylation (GO:0046939),Molecular Function: adenylate kinase activity (GO:0004017),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphotransferase activity%2C phosphate group as acceptor (GO:0016776),Molecular Function: nucleotide kinase activity (GO:0019201),Molecular Function: nucleobase-containing compound kinase activity (GO:0019205);InterPro=Adenylate kinase (IPR000850),Adenylate kinase%2C subfamily (IPR006259),Adenylate kinase%2C active site lid domain (IPR007862),Domain of unknown function DUF1995 (IPR018962);NIAS_FLcDNA=J023050B02;Expression=AK070372;TENOR=Os08t0288200-01;KEGG=Os08t0288200-01 (EC:2.7.4.3)
Chr08	irgsp1_rep	five_prime_UTR	11453068	11453068	.	-	.	Parent=Os08t0288200-01
Chr08	irgsp1_rep	CDS	11452948	11453067	.	-	0	Parent=Os08t0288200-01
Chr08	irgsp1_rep	CDS	11452727	11452861	.	-	0	Parent=Os08t0288200-01
Chr08	irgsp1_rep	CDS	11451530	11451676	.	-	0	Parent=Os08t0288200-01
Chr08	irgsp1_rep	CDS	11450857	11450931	.	-	0	Parent=Os08t0288200-01
Chr08	irgsp1_rep	CDS	11450663	11450765	.	-	0	Parent=Os08t0288200-01
Chr08	irgsp1_rep	CDS	11448885	11448925	.	-	2	Parent=Os08t0288200-01
Chr08	irgsp1_rep	CDS	11448656	11448781	.	-	0	Parent=Os08t0288200-01
Chr08	irgsp1_rep	CDS	11448354	11448389	.	-	0	Parent=Os08t0288200-01
Chr08	irgsp1_rep	CDS	11448175	11448255	.	-	0	Parent=Os08t0288200-01
Chr08	irgsp1_rep	CDS	11447946	11448084	.	-	0	Parent=Os08t0288200-01
Chr08	irgsp1_rep	CDS	11446541	11446620	.	-	2	Parent=Os08t0288200-01
Chr08	irgsp1_rep	CDS	11446398	11446463	.	-	0	Parent=Os08t0288200-01
Chr08	irgsp1_rep	CDS	11444080	11444109	.	-	0	Parent=Os08t0288200-01
Chr08	irgsp1_rep	CDS	11443888	11443997	.	-	0	Parent=Os08t0288200-01
Chr08	irgsp1_rep	CDS	11443606	11443743	.	-	1	Parent=Os08t0288200-01
Chr08	irgsp1_rep	CDS	11443029	11443058	.	-	1	Parent=Os08t0288200-01
Chr08	irgsp1_rep	CDS	11442920	11442944	.	-	1	Parent=Os08t0288200-01
Chr08	irgsp1_rep	three_prime_UTR	11442670	11442919	.	-	.	Parent=Os08t0288200-01
Chr08	irgsp1_rep	mRNA	11460357	11462712	.	+	.	ID=Os08t0288400-01;Name=Os08t0288400-01;Locus_id=Os08g0288400;Note=Similar to transmembrane 9 superfamily protein member 2.;Transcript_evidence=AK102738 (DDBJ%2C Best hit);ORF_evidence=B6ST61 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Nonaspanin (TM9SF) (IPR004240);NIAS_FLcDNA=J033106D23;Expression=AK102738;TENOR=Os08t0288400-01;KEGG=Os08t0288400-01
Chr08	irgsp1_rep	five_prime_UTR	11460357	11460412	.	+	.	Parent=Os08t0288400-01
Chr08	irgsp1_rep	CDS	11460413	11462428	.	+	0	Parent=Os08t0288400-01
Chr08	irgsp1_rep	three_prime_UTR	11462429	11462712	.	+	.	Parent=Os08t0288400-01
Chr08	irgsp1_rep	mRNA	11460378	11462642	.	+	.	ID=Os08t0288400-02;Name=Os08t0288400-02;Locus_id=Os08g0288400;Note=Nonaspanin (TM9SF) family protein.;Transcript_evidence=AK101928 (DDBJ%2C Best hit);ORF_evidence=B6ST61 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Nonaspanin (TM9SF) (IPR004240);NIAS_FLcDNA=J033072C14;Expression=AK101928;TENOR=Os08t0288400-02;KEGG=Os08t0288400-02
Chr08	irgsp1_rep	five_prime_UTR	11460378	11460412	.	+	.	Parent=Os08t0288400-02
Chr08	irgsp1_rep	CDS	11460413	11461509	.	+	0	Parent=Os08t0288400-02
Chr08	irgsp1_rep	CDS	11461572	11462478	.	+	1	Parent=Os08t0288400-02
Chr08	irgsp1_rep	three_prime_UTR	11462479	11462642	.	+	.	Parent=Os08t0288400-02
Chr08	irgsp1_rep	mRNA	11463136	11468530	.	-	.	ID=Os08t0288500-01;Name=Os08t0288500-01;Locus_id=Os08g0288500;Note=Similar to G-patch domain containing protein.;Transcript_evidence=AK318577 (DDBJ%2C Best hit);ORF_evidence=B6UEM9 (UniProt);NIAS_FLcDNA=J090048F14;TENOR=Os08t0288500-01;KEGG=Os08t0288500-01
Chr08	irgsp1_rep	five_prime_UTR	11468529	11468530	.	-	.	Parent=Os08t0288500-01
Chr08	irgsp1_rep	CDS	11467475	11468528	.	-	0	Parent=Os08t0288500-01
Chr08	irgsp1_rep	CDS	11466665	11466756	.	-	2	Parent=Os08t0288500-01
Chr08	irgsp1_rep	CDS	11465971	11466045	.	-	0	Parent=Os08t0288500-01
Chr08	irgsp1_rep	CDS	11465801	11465866	.	-	0	Parent=Os08t0288500-01
Chr08	irgsp1_rep	three_prime_UTR	11464664	11465800	.	-	.	Parent=Os08t0288500-01
Chr08	irgsp1_rep	three_prime_UTR	11463136	11464096	.	-	.	Parent=Os08t0288500-01
Chr08	irgsp1_rep	mRNA	11487287	11491352	.	+	.	ID=Os08t0289000-01;Name=Os08t0289000-01;Locus_id=Os08g0289000;Note=Conserved hypothetical protein.;Transcript_evidence=AK072238 (DDBJ%2C Best hit);ORF_evidence=Q6Z2C3 (UniProt);NIAS_FLcDNA=J023001M13;Expression=AK072238;TENOR=Os08t0289000-01;KEGG=Os08t0289000-01
Chr08	irgsp1_rep	five_prime_UTR	11487287	11487454	.	+	.	Parent=Os08t0289000-01
Chr08	irgsp1_rep	CDS	11487455	11488255	.	+	0	Parent=Os08t0289000-01
Chr08	irgsp1_rep	CDS	11490854	11490949	.	+	0	Parent=Os08t0289000-01
Chr08	irgsp1_rep	three_prime_UTR	11490950	11491352	.	+	.	Parent=Os08t0289000-01
Chr08	irgsp1_rep	mRNA	11487317	11488826	.	+	.	ID=Os08t0289000-02;Name=Os08t0289000-02;Locus_id=Os08g0289000;Note=Hypothetical conserved gene.;Transcript_evidence=AK106281 (DDBJ%2C Best hit);ORF_evidence=A3BRK8 (UniProt);NIAS_FLcDNA=002-101-A03;Expression=AK106281;TENOR=Os08t0289000-02;KEGG=Os08t0289000-02
Chr08	irgsp1_rep	five_prime_UTR	11487317	11487454	.	+	.	Parent=Os08t0289000-02
Chr08	irgsp1_rep	CDS	11487455	11488351	.	+	0	Parent=Os08t0289000-02
Chr08	irgsp1_rep	three_prime_UTR	11488352	11488826	.	+	.	Parent=Os08t0289000-02
Chr08	irgsp1_rep	mRNA	11487318	11491371	.	+	.	ID=Os08t0289000-03;Name=Os08t0289000-03;Locus_id=Os08g0289000;Note=Conserved hypothetical protein.;Transcript_evidence=AK106365 (DDBJ%2C Best hit);ORF_evidence=Q6Z2C3 (UniProt);NIAS_FLcDNA=002-102-B06;Expression=AK106365;TENOR=Os08t0289000-03;KEGG=Os08t0289000-03
Chr08	irgsp1_rep	five_prime_UTR	11487318	11487454	.	+	.	Parent=Os08t0289000-03
Chr08	irgsp1_rep	CDS	11487455	11488255	.	+	0	Parent=Os08t0289000-03
Chr08	irgsp1_rep	CDS	11490854	11490949	.	+	0	Parent=Os08t0289000-03
Chr08	irgsp1_rep	three_prime_UTR	11490950	11491371	.	+	.	Parent=Os08t0289000-03
Chr08	irgsp1_rep	mRNA	11510586	11510921	.	-	.	ID=Os08t0289266-00;Name=Os08t0289266-00;Locus_id=Os08g0289266;Note=Similar to Histone H2A.;Transcript_evidence=EU946920 (DDBJ);ORF_evidence=B9FM49 (UniProt);GO=Molecular Function: DNA binding (GO:0003677);InterPro=Histone-fold (IPR009072);TENOR=Os08t0289266-00
Chr08	irgsp1_rep	CDS	11510586	11510921	.	-	0	Parent=Os08t0289266-00
Chr08	irgsp1_rep	mRNA	11512090	11528238	.	-	.	ID=Os08t0289400-00;Name=Os08t0289400-00;Locus_id=Os08g0289400;Note=SNF2-related domain containing protein.;Transcript_evidence=AK334734 (DDBJ);ORF_evidence=NP_001057310.1 (RefSeq);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP binding (GO:0005524);InterPro=SNF2-related (IPR000330),DEAD-like helicase (IPR014001);TENOR=Os08t0289400-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	11528093	11528238	.	-	.	Parent=Os08t0289400-00
Chr08	irgsp1_rep	CDS	11527739	11528092	.	-	0	Parent=Os08t0289400-00
Chr08	irgsp1_rep	CDS	11527170	11527481	.	-	0	Parent=Os08t0289400-00
Chr08	irgsp1_rep	CDS	11526671	11526841	.	-	0	Parent=Os08t0289400-00
Chr08	irgsp1_rep	CDS	11520872	11521193	.	-	0	Parent=Os08t0289400-00
Chr08	irgsp1_rep	CDS	11520057	11520484	.	-	2	Parent=Os08t0289400-00
Chr08	irgsp1_rep	three_prime_UTR	11519806	11520056	.	-	.	Parent=Os08t0289400-00
Chr08	irgsp1_rep	three_prime_UTR	11512618	11513363	.	-	.	Parent=Os08t0289400-00
Chr08	irgsp1_rep	three_prime_UTR	11512457	11512533	.	-	.	Parent=Os08t0289400-00
Chr08	irgsp1_rep	three_prime_UTR	11512090	11512341	.	-	.	Parent=Os08t0289400-00
Chr08	irgsp1_rep	mRNA	11548007	11554951	.	-	.	ID=Os08t0290000-01;Name=Os08t0290000-01;Locus_id=Os08g0290000;RAP-DB Gene Symbol Synonym(s)=OsNPPR1%2C FGR1;RAP-DB Gene Name Synonym(s)=nuclear-localized PPR protein 1%2C floury and growth retardation1;CGSNL Gene Symbol=FGR1;CGSNL Gene Name=FLOURY AND GROWTH RETARDATION 1;Oryzabase Gene Symbol Synonym(s)=OsFGR1%2C OsNPPR1%2C NPPR1;Oryzabase Gene Name Synonym(s)=floury and growth retardation1%2C nuclear-localized PPR protein 1;Note=Nuclear-localized pentatricopeptide repeat (PPR) protein%2C Regulation of mitochondrial development and/or functions%2C Endosperm development;Transcript_evidence=AK120164;ORF_evidence=Q6Z2B6;GO=Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical domain superfamily (IPR011990),Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J013031E22;Manual Curation=June 18%2C 2019;Literature_PMID=31087099;Oryzabase=23087;Expression=AK120164;TENOR=Os08t0290000-01;KEGG=Os08t0290000-01;Subcellular location=nucleus (GO:0005634)
Chr08	irgsp1_rep	five_prime_UTR	11554940	11554951	.	-	.	Parent=Os08t0290000-01
Chr08	irgsp1_rep	CDS	11552519	11554939	.	-	0	Parent=Os08t0290000-01
Chr08	irgsp1_rep	three_prime_UTR	11552227	11552518	.	-	.	Parent=Os08t0290000-01
Chr08	irgsp1_rep	three_prime_UTR	11551804	11551985	.	-	.	Parent=Os08t0290000-01
Chr08	irgsp1_rep	three_prime_UTR	11550178	11550667	.	-	.	Parent=Os08t0290000-01
Chr08	irgsp1_rep	three_prime_UTR	11549736	11549937	.	-	.	Parent=Os08t0290000-01
Chr08	irgsp1_rep	three_prime_UTR	11548007	11548414	.	-	.	Parent=Os08t0290000-01
Chr08	irgsp1_rep	mRNA	11558486	11563711	.	-	.	ID=Os08t0290100-01;Name=Os08t0290100-01;Locus_id=Os08g0290100;Note=Pentatricopeptide repeat containing protein.;Transcript_evidence=AK073404 (DDBJ%2C Best hit);ORF_evidence=B9G040 (UniProt);InterPro=Central kinetochore-associated /Alf4/glomulin (IPR013877);NIAS_FLcDNA=J033043G13;Expression=AK073404;TENOR=Os08t0290100-01;KEGG=Os08t0290100-01
Chr08	irgsp1_rep	five_prime_UTR	11563692	11563711	.	-	.	Parent=Os08t0290100-01
Chr08	irgsp1_rep	CDS	11563608	11563691	.	-	0	Parent=Os08t0290100-01
Chr08	irgsp1_rep	CDS	11563350	11563529	.	-	0	Parent=Os08t0290100-01
Chr08	irgsp1_rep	CDS	11563080	11563229	.	-	0	Parent=Os08t0290100-01
Chr08	irgsp1_rep	CDS	11562492	11562561	.	-	0	Parent=Os08t0290100-01
Chr08	irgsp1_rep	CDS	11562066	11562244	.	-	2	Parent=Os08t0290100-01
Chr08	irgsp1_rep	CDS	11561893	11561952	.	-	0	Parent=Os08t0290100-01
Chr08	irgsp1_rep	CDS	11561636	11561789	.	-	0	Parent=Os08t0290100-01
Chr08	irgsp1_rep	CDS	11561483	11561542	.	-	2	Parent=Os08t0290100-01
Chr08	irgsp1_rep	CDS	11561129	11561397	.	-	2	Parent=Os08t0290100-01
Chr08	irgsp1_rep	CDS	11560981	11561053	.	-	0	Parent=Os08t0290100-01
Chr08	irgsp1_rep	CDS	11560704	11560780	.	-	2	Parent=Os08t0290100-01
Chr08	irgsp1_rep	CDS	11560153	11560353	.	-	0	Parent=Os08t0290100-01
Chr08	irgsp1_rep	CDS	11559376	11559427	.	-	0	Parent=Os08t0290100-01
Chr08	irgsp1_rep	CDS	11558596	11558810	.	-	2	Parent=Os08t0290100-01
Chr08	irgsp1_rep	three_prime_UTR	11558486	11558595	.	-	.	Parent=Os08t0290100-01
Chr08	irgsp1_rep	mRNA	11564027	11565163	.	+	.	ID=Os08t0290200-00;Name=Os08t0290200-00;Locus_id=Os08g0290200;Note=Protein of unknown function DUF313 domain containing protein.;Transcript_evidence=EU944481 (DDBJ);ORF_evidence=Q6Z2B3 (UniProt);InterPro=Protein of unknown function DUF313 (IPR005508);TENOR=Os08t0290200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	11564027	11564684	.	+	0	Parent=Os08t0290200-00
Chr08	irgsp1_rep	CDS	11564829	11565163	.	+	2	Parent=Os08t0290200-00
Chr08	irgsp1_rep	mRNA	11583484	11587229	.	-	.	ID=Os08t0290400-01;Name=Os08t0290400-01;Locus_id=Os08g0290400;Note=Conserved hypothetical protein.;Transcript_evidence=AK069705 (DDBJ%2C Best hit);ORF_evidence=B8B993 (UniProt);NIAS_FLcDNA=J023027D13;Expression=AK069705;TENOR=Os08t0290400-01;KEGG=Os08t0290400-01
Chr08	irgsp1_rep	five_prime_UTR	11586946	11587229	.	-	.	Parent=Os08t0290400-01
Chr08	irgsp1_rep	CDS	11586837	11586945	.	-	0	Parent=Os08t0290400-01
Chr08	irgsp1_rep	CDS	11584634	11584936	.	-	2	Parent=Os08t0290400-01
Chr08	irgsp1_rep	CDS	11584486	11584532	.	-	2	Parent=Os08t0290400-01
Chr08	irgsp1_rep	CDS	11584346	11584408	.	-	0	Parent=Os08t0290400-01
Chr08	irgsp1_rep	CDS	11584097	11584229	.	-	0	Parent=Os08t0290400-01
Chr08	irgsp1_rep	CDS	11583974	11584008	.	-	2	Parent=Os08t0290400-01
Chr08	irgsp1_rep	three_prime_UTR	11583484	11583973	.	-	.	Parent=Os08t0290400-01
Chr08	irgsp1_rep	mRNA	11586697	11587183	.	-	.	ID=Os08t0290400-02;Name=Os08t0290400-02;Locus_id=Os08g0290400;Note=Hypothetical protein.;Transcript_evidence=AK105355 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-119-C02;TENOR=Os08t0290400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	11587182	11587183	.	-	.	Parent=Os08t0290400-02
Chr08	irgsp1_rep	CDS	11586858	11587181	.	-	0	Parent=Os08t0290400-02
Chr08	irgsp1_rep	three_prime_UTR	11586697	11586857	.	-	.	Parent=Os08t0290400-02
Chr08	irgsp1_rep	mRNA	11587812	11589706	.	+	.	ID=Os08t0290500-01;Name=Os08t0290500-01;Locus_id=Os08g0290500;Note=Similar to PHD finger family protein.;Transcript_evidence=AK066894 (DDBJ%2C Best hit);ORF_evidence=NP_974313.1 (RefSeq);NIAS_FLcDNA=J013089O21;TENOR=Os08t0290500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	11587812	11587813	.	+	.	Parent=Os08t0290500-01
Chr08	irgsp1_rep	CDS	11587814	11588317	.	+	0	Parent=Os08t0290500-01
Chr08	irgsp1_rep	three_prime_UTR	11588318	11588622	.	+	.	Parent=Os08t0290500-01
Chr08	irgsp1_rep	three_prime_UTR	11588814	11589706	.	+	.	Parent=Os08t0290500-01
Chr08	irgsp1_rep	mRNA	11587818	11588825	.	+	.	ID=Os08t0290500-02;Name=Os08t0290500-02;Locus_id=Os08g0290500;Note=Similar to PHD finger family protein.;Transcript_evidence=AK067122 (DDBJ%2C Best hit);ORF_evidence=NP_974313.1 (RefSeq);NIAS_FLcDNA=J013097A06;TENOR=Os08t0290500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	11587818	11587819	.	+	.	Parent=Os08t0290500-02
Chr08	irgsp1_rep	CDS	11587820	11588317	.	+	0	Parent=Os08t0290500-02
Chr08	irgsp1_rep	three_prime_UTR	11588318	11588825	.	+	.	Parent=Os08t0290500-02
Chr08	irgsp1_rep	mRNA	11587899	11590913	.	+	.	ID=Os08t0290500-03;Name=Os08t0290500-03;Locus_id=Os08g0290500;Note=Similar to PHD finger family protein.;Transcript_evidence=AK102868 (DDBJ%2C Best hit);ORF_evidence=NP_974313.1 (RefSeq);NIAS_FLcDNA=J033111N23;TENOR=Os08t0290500-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	11587899	11588468	.	+	0	Parent=Os08t0290500-03
Chr08	irgsp1_rep	three_prime_UTR	11588469	11588622	.	+	.	Parent=Os08t0290500-03
Chr08	irgsp1_rep	three_prime_UTR	11589426	11589474	.	+	.	Parent=Os08t0290500-03
Chr08	irgsp1_rep	three_prime_UTR	11589561	11590913	.	+	.	Parent=Os08t0290500-03
Chr08	irgsp1_rep	mRNA	11607393	11608814	.	+	.	ID=Os08t0290700-01;Name=Os08t0290700-01;Locus_id=Os08g0290700;Note=Winged helix repressor DNA-binding domain containing protein.;Transcript_evidence=AK071201 (DDBJ%2C Best hit);ORF_evidence=A3BRL7 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: O-methyltransferase activity (GO:0008171),Molecular Function: protein dimerization activity (GO:0046983);InterPro=O-methyltransferase%2C family 2 (IPR001077),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Plant methyltransferase dimerisation (IPR012967),O-methyltransferase%2C COMT%2C eukaryota (IPR016461);NIAS_FLcDNA=J023082D24;Oryzabase=15526;Expression=AK071201;TENOR=Os08t0290700-01;KEGG=Os08t0290700-01
Chr08	irgsp1_rep	five_prime_UTR	11607393	11607421	.	+	.	Parent=Os08t0290700-01
Chr08	irgsp1_rep	CDS	11607422	11608252	.	+	0	Parent=Os08t0290700-01
Chr08	irgsp1_rep	CDS	11608372	11608668	.	+	0	Parent=Os08t0290700-01
Chr08	irgsp1_rep	three_prime_UTR	11608669	11608814	.	+	.	Parent=Os08t0290700-01
Chr08	irgsp1_rep	mRNA	11629289	11631476	.	+	.	ID=Os08t0290900-01;Name=Os08t0290900-01;Locus_id=Os08g0290900;Note=Similar to DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide.;Transcript_evidence=AK288132 (DDBJ%2C Best hit);ORF_evidence=NP_001147612.1 (RefSeq);InterPro=RNA polymerase III%2C subunit Rpc25 (IPR013238);NIAS_FLcDNA=J080302F20;TENOR=Os08t0290900-01;KEGG=Os08t0290900-01 (EC:2.7.7.6)
Chr08	irgsp1_rep	five_prime_UTR	11629289	11630457	.	+	.	Parent=Os08t0290900-01
Chr08	irgsp1_rep	CDS	11630458	11630543	.	+	0	Parent=Os08t0290900-01
Chr08	irgsp1_rep	CDS	11630945	11631014	.	+	1	Parent=Os08t0290900-01
Chr08	irgsp1_rep	CDS	11631104	11631138	.	+	0	Parent=Os08t0290900-01
Chr08	irgsp1_rep	CDS	11631255	11631381	.	+	1	Parent=Os08t0290900-01
Chr08	irgsp1_rep	three_prime_UTR	11631382	11631476	.	+	.	Parent=Os08t0290900-01
Chr08	irgsp1_rep	mRNA	11702643	11711035	.	+	.	ID=Os08t0292000-01;Name=Os08t0292000-01;Locus_id=Os08g0292000;RAP-DB Gene Symbol Synonym(s)=OsTF1L;RAP-DB Gene Name Synonym(s)=Oryza sativa transcription factor 1-like;CGSNL Gene Symbol=TF1L;CGSNL Gene Name=TRANSCRIPTION FACTOR 1-LIKE;Oryzabase Gene Symbol Synonym(s)=OsTF1L;Note=Homeodomain-leucine zipper (HD-ZIP) transcription factor%2C Drought tolerance%2C Lignin biosynthesis%2C Stomatal closure;Transcript_evidence=AK100441;ORF_evidence=Q7EYP6;GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: lipid binding (GO:0008289);InterPro=Homeobox-like domain superfamily (IPR009057),Homeobox domain (IPR001356),START domain (IPR002913);NIAS_FLcDNA=J023089M04;Manual Curation=May 30%2C 2018;Literature_PMID=29781573;Oryzabase=22451;TENOR=Os08t0292000-01;Subcellular location=nucleus (GO:0005634)
Chr08	irgsp1_rep	five_prime_UTR	11702643	11702961	.	+	.	Parent=Os08t0292000-01
Chr08	irgsp1_rep	five_prime_UTR	11706705	11706709	.	+	.	Parent=Os08t0292000-01
Chr08	irgsp1_rep	CDS	11706710	11706942	.	+	0	Parent=Os08t0292000-01
Chr08	irgsp1_rep	CDS	11707041	11707158	.	+	1	Parent=Os08t0292000-01
Chr08	irgsp1_rep	CDS	11707233	11707901	.	+	0	Parent=Os08t0292000-01
Chr08	irgsp1_rep	CDS	11707983	11708084	.	+	0	Parent=Os08t0292000-01
Chr08	irgsp1_rep	CDS	11708175	11708423	.	+	0	Parent=Os08t0292000-01
Chr08	irgsp1_rep	CDS	11709080	11709251	.	+	0	Parent=Os08t0292000-01
Chr08	irgsp1_rep	CDS	11709370	11709770	.	+	2	Parent=Os08t0292000-01
Chr08	irgsp1_rep	CDS	11710413	11710829	.	+	0	Parent=Os08t0292000-01
Chr08	irgsp1_rep	three_prime_UTR	11710830	11711035	.	+	.	Parent=Os08t0292000-01
Chr08	irgsp1_rep	mRNA	11702728	11710627	.	+	.	ID=Os08t0292000-02;Name=Os08t0292000-02;Locus_id=Os08g0292000;CGSNL Gene Symbol=TF1L;CGSNL Gene Name=TRANSCRIPTION FACTOR 1-LIKE;Oryzabase Gene Symbol Synonym(s)=OsTF1L;Note=Hypothetical conserved gene.;Transcript_evidence=AK073784 (DDBJ%2C Best hit);ORF_evidence=B9G047 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),Lipid-binding START (IPR002913),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);NIAS_FLcDNA=J033068E17;Oryzabase=22451;TENOR=Os08t0292000-02
Chr08	irgsp1_rep	five_prime_UTR	11702728	11702951	.	+	.	Parent=Os08t0292000-02
Chr08	irgsp1_rep	CDS	11702952	11702961	.	+	0	Parent=Os08t0292000-02
Chr08	irgsp1_rep	CDS	11706705	11706942	.	+	2	Parent=Os08t0292000-02
Chr08	irgsp1_rep	CDS	11707041	11707158	.	+	1	Parent=Os08t0292000-02
Chr08	irgsp1_rep	CDS	11707233	11707901	.	+	0	Parent=Os08t0292000-02
Chr08	irgsp1_rep	CDS	11707983	11708084	.	+	0	Parent=Os08t0292000-02
Chr08	irgsp1_rep	CDS	11708175	11708423	.	+	0	Parent=Os08t0292000-02
Chr08	irgsp1_rep	CDS	11709080	11709251	.	+	0	Parent=Os08t0292000-02
Chr08	irgsp1_rep	CDS	11709376	11709770	.	+	2	Parent=Os08t0292000-02
Chr08	irgsp1_rep	CDS	11710413	11710627	.	+	0	Parent=Os08t0292000-02
Chr08	irgsp1_rep	mRNA	11726258	11727344	.	-	.	ID=Os08t0292400-01;Name=Os08t0292400-01;Locus_id=Os08g0292400;Note=Hypothetical conserved gene.;Transcript_evidence=AK111365 (DDBJ%2C Best hit);ORF_evidence=B8B9A4 (UniProt);NIAS_FLcDNA=002-181-H10;Expression=AK111365;TENOR=Os08t0292400-01;KEGG=Os08t0292400-01
Chr08	irgsp1_rep	five_prime_UTR	11727304	11727344	.	-	.	Parent=Os08t0292400-01
Chr08	irgsp1_rep	CDS	11727133	11727303	.	-	0	Parent=Os08t0292400-01
Chr08	irgsp1_rep	three_prime_UTR	11727083	11727132	.	-	.	Parent=Os08t0292400-01
Chr08	irgsp1_rep	three_prime_UTR	11726258	11726685	.	-	.	Parent=Os08t0292400-01
Chr08	irgsp1_rep	mRNA	11728223	11731525	.	+	.	ID=Os08t0292600-01;Name=Os08t0292600-01;Locus_id=Os08g0292600;CGSNL Gene Symbol=CYP28;CGSNL Gene Name=CYCLOPHILIN 28;Oryzabase Gene Symbol Synonym(s)=OsCYP28%2C OsCYP-21%2C OsCYP28a%2C OsCYP28b%2C OsCYP28c%2C OsCYP28d;Oryzabase Gene Name Synonym(s)=cyclophilin 28%2C cyclophilin 21;Note=Similar to Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type family protein.;Transcript_evidence=AK121304 (DDBJ%2C Best hit);ORF_evidence=B4FFW0 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);InterPro=Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type (IPR002130),Cyclophilin-like (IPR015891);NIAS_FLcDNA=J023111F24;Oryzabase=10067;Expression=AK121304;TENOR=Os08t0292600-01;KEGG=Os08t0292600-01
Chr08	irgsp1_rep	five_prime_UTR	11728223	11729175	.	+	.	Parent=Os08t0292600-01
Chr08	irgsp1_rep	CDS	11729176	11729952	.	+	0	Parent=Os08t0292600-01
Chr08	irgsp1_rep	three_prime_UTR	11729953	11731525	.	+	.	Parent=Os08t0292600-01
Chr08	irgsp1_rep	mRNA	11728271	11733037	.	+	.	ID=Os08t0292600-02;Name=Os08t0292600-02;Locus_id=Os08g0292600;CGSNL Gene Symbol=CYP28;CGSNL Gene Name=CYCLOPHILIN 28;Oryzabase Gene Symbol Synonym(s)=OsCYP28%2C OsCYP-21%2C OsCYP28a%2C OsCYP28b%2C OsCYP28c%2C OsCYP28d;Oryzabase Gene Name Synonym(s)=cyclophilin 28%2C cyclophilin 21;Note=Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type domain containing protein.;Transcript_evidence=AK070751 (DDBJ%2C Best hit);ORF_evidence=B4FFW0 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);InterPro=Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type (IPR002130),Cyclophilin-like (IPR015891);NIAS_FLcDNA=J023064N17;Oryzabase=10067;Expression=AK070751;TENOR=Os08t0292600-02;KEGG=Os08t0292600-02 (EC:5.2.1.8)
Chr08	irgsp1_rep	five_prime_UTR	11728271	11729175	.	+	.	Parent=Os08t0292600-02
Chr08	irgsp1_rep	CDS	11729176	11729947	.	+	0	Parent=Os08t0292600-02
Chr08	irgsp1_rep	CDS	11732664	11732875	.	+	2	Parent=Os08t0292600-02
Chr08	irgsp1_rep	three_prime_UTR	11732876	11733037	.	+	.	Parent=Os08t0292600-02
Chr08	irgsp1_rep	mRNA	11728314	11733106	.	+	.	ID=Os08t0292600-03;Name=Os08t0292600-03;Locus_id=Os08g0292600;CGSNL Gene Symbol=CYP28;CGSNL Gene Name=CYCLOPHILIN 28;Oryzabase Gene Symbol Synonym(s)=OsCYP28%2C OsCYP-21%2C OsCYP28a%2C OsCYP28b%2C OsCYP28c%2C OsCYP28d;Oryzabase Gene Name Synonym(s)=cyclophilin 28%2C cyclophilin 21;Note=Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type domain containing protein.;Transcript_evidence=AK069211 (DDBJ%2C Best hit);ORF_evidence=B4FFW0 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);InterPro=Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type (IPR002130),Cyclophilin-like (IPR015891);NIAS_FLcDNA=J023011I02;Oryzabase=10067;Expression=AK069211;TENOR=Os08t0292600-03;KEGG=Os08t0292600-03 (EC:5.2.1.8)
Chr08	irgsp1_rep	five_prime_UTR	11728314	11728412	.	+	.	Parent=Os08t0292600-03
Chr08	irgsp1_rep	five_prime_UTR	11729103	11729175	.	+	.	Parent=Os08t0292600-03
Chr08	irgsp1_rep	CDS	11729176	11729947	.	+	0	Parent=Os08t0292600-03
Chr08	irgsp1_rep	CDS	11732664	11732875	.	+	2	Parent=Os08t0292600-03
Chr08	irgsp1_rep	three_prime_UTR	11732876	11733106	.	+	.	Parent=Os08t0292600-03
Chr08	irgsp1_rep	mRNA	11758735	11765193	.	+	.	ID=Os08t0292900-01;Name=Os08t0292900-01;Locus_id=Os08g0292900;CGSNL Gene Symbol=OSH45;CGSNL Gene Name=HOMEOBOX45;Oryzabase Gene Symbol Synonym(s)=OSH42%2C OSH44%2C H45;Oryzabase Gene Name Synonym(s)=Oryza sativa homeobox45%2C Homeobox protein knotted-1-like 13%2C Homeobox protein OSH45;Note=Similar to Isoform 2 of Homeobox protein knotted-1-like 13.;Transcript_evidence=AK111645 (DDBJ%2C Best hit);ORF_evidence=Q0J6N4-2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),ELK (IPR005539),KNOX2 (IPR005541),Homeobox KN domain (IPR008422),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);NIAS_FLcDNA=J013132C10;Oryzabase=8709;TENOR=Os08t0292900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	11758735	11758795	.	+	.	Parent=Os08t0292900-01
Chr08	irgsp1_rep	CDS	11758796	11758803	.	+	0	Parent=Os08t0292900-01
Chr08	irgsp1_rep	CDS	11759257	11759302	.	+	1	Parent=Os08t0292900-01
Chr08	irgsp1_rep	CDS	11762605	11762725	.	+	0	Parent=Os08t0292900-01
Chr08	irgsp1_rep	CDS	11763192	11763379	.	+	2	Parent=Os08t0292900-01
Chr08	irgsp1_rep	CDS	11763466	11763597	.	+	0	Parent=Os08t0292900-01
Chr08	irgsp1_rep	CDS	11764540	11764676	.	+	0	Parent=Os08t0292900-01
Chr08	irgsp1_rep	CDS	11764770	11764773	.	+	1	Parent=Os08t0292900-01
Chr08	irgsp1_rep	three_prime_UTR	11764774	11765193	.	+	.	Parent=Os08t0292900-01
Chr08	irgsp1_rep	mRNA	11758884	11759073	.	-	.	ID=Os08t0293000-00;Name=Os08t0293000-00;Locus_id=Os08g0293000;Note=Non-protein coding transcript.;Transcript_evidence=AM055638 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0293000-00
Chr08	irgsp1_rep	exon	11758884	11759073	.	-	.	Parent=Os08t0293000-00
Chr08	irgsp1_rep	mRNA	11773736	11774515	.	-	.	ID=Os08t0293100-01;Name=Os08t0293100-01;Locus_id=Os08g0293100;Note=Conserved hypothetical protein.;Transcript_evidence=AK071000 (DDBJ%2C Best hit);ORF_evidence=A2YTL8 (UniProt);NIAS_FLcDNA=J023075F10;Expression=AK071000;TENOR=Os08t0293100-01;KEGG=Os08t0293100-01
Chr08	irgsp1_rep	five_prime_UTR	11774467	11774515	.	-	.	Parent=Os08t0293100-01
Chr08	irgsp1_rep	CDS	11774068	11774466	.	-	0	Parent=Os08t0293100-01
Chr08	irgsp1_rep	three_prime_UTR	11773736	11774067	.	-	.	Parent=Os08t0293100-01
Chr08	irgsp1_rep	mRNA	11780383	11782202	.	+	.	ID=Os08t0293200-01;Name=Os08t0293200-01;Locus_id=Os08g0293200;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK071168 (DDBJ%2C Best hit);ORF_evidence=B9G053 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810);NIAS_FLcDNA=J023080I21;Oryzabase=17597;TENOR=Os08t0293200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	11780383	11780754	.	+	.	Parent=Os08t0293200-01
Chr08	irgsp1_rep	CDS	11780755	11781534	.	+	0	Parent=Os08t0293200-01
Chr08	irgsp1_rep	three_prime_UTR	11781535	11782202	.	+	.	Parent=Os08t0293200-01
Chr08	irgsp1_rep	mRNA	11777372	11781079	.	-	.	ID=Os08t0293250-00;Name=Os08t0293250-00;Locus_id=Os08g0293250;Note=Hypothetical protein.;Transcript_evidence=EU969485 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0293250-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	11781079	11781079	.	-	.	Parent=Os08t0293250-00
Chr08	irgsp1_rep	CDS	11780833	11781078	.	-	0	Parent=Os08t0293250-00
Chr08	irgsp1_rep	CDS	11777446	11777493	.	-	0	Parent=Os08t0293250-00
Chr08	irgsp1_rep	three_prime_UTR	11777372	11777445	.	-	.	Parent=Os08t0293250-00
Chr08	irgsp1_rep	mRNA	11785529	11798215	.	-	.	ID=Os08t0293300-01;Name=Os08t0293300-01;Locus_id=Os08g0293300;Note=NB-ARC domain containing protein.;Transcript_evidence=AK073881 (DDBJ%2C Best hit);ORF_evidence=A3BRN0 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J033074F15;Expression=AK073881;TENOR=Os08t0293300-01;KEGG=Os08t0293300-01
Chr08	irgsp1_rep	five_prime_UTR	11798032	11798215	.	-	.	Parent=Os08t0293300-01
Chr08	irgsp1_rep	CDS	11797544	11798031	.	-	0	Parent=Os08t0293300-01
Chr08	irgsp1_rep	CDS	11785981	11788240	.	-	1	Parent=Os08t0293300-01
Chr08	irgsp1_rep	three_prime_UTR	11785529	11785980	.	-	.	Parent=Os08t0293300-01
Chr08	irgsp1_rep	mRNA	11797651	11798466	.	+	.	ID=Os08t0293400-01;Name=Os08t0293400-01;Locus_id=Os08g0293400;Note=Similar to Glutathione S-transferase.;Transcript_evidence=AK108463 (DDBJ%2C Best hit);ORF_evidence=Q7XBA1 (UniProt);NIAS_FLcDNA=002-143-D10;Expression=AK108463;TENOR=Os08t0293400-01;KEGG=Os08t0293400-01
Chr08	irgsp1_rep	five_prime_UTR	11797651	11798131	.	+	.	Parent=Os08t0293400-01
Chr08	irgsp1_rep	CDS	11798132	11798269	.	+	0	Parent=Os08t0293400-01
Chr08	irgsp1_rep	three_prime_UTR	11798270	11798466	.	+	.	Parent=Os08t0293400-01
Chr08	irgsp1_rep	mRNA	11849265	11850035	.	-	.	ID=Os08t0294300-01;Name=Os08t0294300-01;Locus_id=Os08g0294300;Note=Conserved hypothetical protein.;Transcript_evidence=AK069295 (DDBJ%2C Best hit);ORF_evidence=A3BRN6 (UniProt);NIAS_FLcDNA=J023018C05;TENOR=Os08t0294300-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	11849588	11850035	.	-	.	Parent=Os08t0294300-01
Chr08	irgsp1_rep	CDS	11849265	11849587	.	-	0	Parent=Os08t0294300-01
Chr08	irgsp1_rep	mRNA	11869981	11871091	.	-	.	ID=Os08t0295000-01;Name=Os08t0295000-01;Locus_id=Os08g0295000;Oryzabase Gene Symbol Synonym(s)=CIP73%2C OsCIP73_like;Oryzabase Gene Name Synonym(s)=CCaMK-interacting protein of approximately 73 kD;Note=Conserved hypothetical protein.;Transcript_evidence=AK062297 (DDBJ%2C Best hit);ORF_evidence=B9G058 (UniProt);NIAS_FLcDNA=001-100-G02;Oryzabase=13656;TENOR=Os08t0295000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	11870852	11871091	.	-	0	Parent=Os08t0295000-01
Chr08	irgsp1_rep	CDS	11870674	11870780	.	-	0	Parent=Os08t0295000-01
Chr08	irgsp1_rep	CDS	11870334	11870346	.	-	1	Parent=Os08t0295000-01
Chr08	irgsp1_rep	three_prime_UTR	11869981	11870333	.	-	.	Parent=Os08t0295000-01
Chr08	irgsp1_rep	mRNA	11874807	11878756	.	-	.	ID=Os08t0295100-00;Name=Os08t0295100-00;Locus_id=Os08g0295100;Oryzabase Gene Symbol Synonym(s)=CIP73%2C OsCIP73_like;Oryzabase Gene Name Synonym(s)=CCaMK-interacting protein of approximately 73 kD;Note=Ubiquitin domain containing protein.;Transcript_evidence=EU967057 (DDBJ);ORF_evidence=B9G058 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin (IPR000626),Ubiquitin supergroup (IPR019955),Ubiquitin subgroup (IPR019956);Oryzabase=13656;TENOR=Os08t0295100-00
Chr08	irgsp1_rep	CDS	11878541	11878756	.	-	0	Parent=Os08t0295100-00
Chr08	irgsp1_rep	CDS	11877365	11877482	.	-	0	Parent=Os08t0295100-00
Chr08	irgsp1_rep	CDS	11876752	11876832	.	-	2	Parent=Os08t0295100-00
Chr08	irgsp1_rep	CDS	11875778	11875890	.	-	2	Parent=Os08t0295100-00
Chr08	irgsp1_rep	CDS	11875427	11875567	.	-	0	Parent=Os08t0295100-00
Chr08	irgsp1_rep	CDS	11875252	11875336	.	-	0	Parent=Os08t0295100-00
Chr08	irgsp1_rep	CDS	11874953	11875128	.	-	2	Parent=Os08t0295100-00
Chr08	irgsp1_rep	three_prime_UTR	11874807	11874952	.	-	.	Parent=Os08t0295100-00
Chr08	irgsp1_rep	mRNA	11880433	11881108	.	-	.	ID=Os08t0295200-00;Name=Os08t0295200-00;Locus_id=Os08g0295200;Note=Conserved hypothetical protein.;Transcript_evidence=AK358104 (DDBJ);ORF_evidence=B9GDQ7 (UniProt);TENOR=Os08t0295200-00
Chr08	irgsp1_rep	five_prime_UTR	11880684	11881108	.	-	.	Parent=Os08t0295200-00
Chr08	irgsp1_rep	five_prime_UTR	11880604	11880623	.	-	.	Parent=Os08t0295200-00
Chr08	irgsp1_rep	CDS	11880433	11880603	.	-	0	Parent=Os08t0295200-00
Chr08	irgsp1_rep	mRNA	11887897	11897477	.	-	.	ID=Os08t0295300-01;Name=Os08t0295300-01;Locus_id=Os08g0295300;Note=Similar to Threonyl-tRNA synthetase%2C cytoplasmic (EC 6.1.1.3) (Threonine--tRNA ligase) (ThrRS).;Transcript_evidence=AK070378 (DDBJ%2C Best hit);ORF_evidence=Q8LPC9 (UniProt);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: threonyl-tRNA aminoacylation (GO:0006435),Biological Process: tRNA aminoacylation (GO:0043039),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: threonine-tRNA ligase activity (GO:0004829),Molecular Function: ATP binding (GO:0005524),Molecular Function: ligase activity%2C forming aminoacyl-tRNA and related compounds (GO:0016876);InterPro=Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved domain (IPR002314),Threonyl-tRNA synthetase%2C class IIa (IPR002320),TGS (IPR004095),Anticodon-binding (IPR004154),Aminoacyl-tRNA synthetase%2C class II (IPR006195),Beta-grasp fold%2C ferredoxin-type (IPR012675),TGS-like (IPR012676),Threonyl/alanyl tRNA synthetase%2C SAD (IPR012947),Threonyl/alanyl tRNA synthetase%2C class II-like%2C putative editing domain (IPR018163);NIAS_FLcDNA=J023052L01;Expression=AK070378;TENOR=Os08t0295300-01;KEGG=Os08t0295300-01 (EC:6.1.1.3)
Chr08	irgsp1_rep	five_prime_UTR	11897429	11897477	.	-	.	Parent=Os08t0295300-01
Chr08	irgsp1_rep	CDS	11897094	11897428	.	-	0	Parent=Os08t0295300-01
Chr08	irgsp1_rep	CDS	11896316	11896553	.	-	1	Parent=Os08t0295300-01
Chr08	irgsp1_rep	CDS	11896091	11896150	.	-	0	Parent=Os08t0295300-01
Chr08	irgsp1_rep	CDS	11895910	11895999	.	-	0	Parent=Os08t0295300-01
Chr08	irgsp1_rep	CDS	11895624	11895699	.	-	0	Parent=Os08t0295300-01
Chr08	irgsp1_rep	CDS	11895171	11895298	.	-	2	Parent=Os08t0295300-01
Chr08	irgsp1_rep	CDS	11894999	11895088	.	-	0	Parent=Os08t0295300-01
Chr08	irgsp1_rep	CDS	11894411	11894499	.	-	0	Parent=Os08t0295300-01
Chr08	irgsp1_rep	CDS	11894221	11894317	.	-	1	Parent=Os08t0295300-01
Chr08	irgsp1_rep	CDS	11894020	11894106	.	-	0	Parent=Os08t0295300-01
Chr08	irgsp1_rep	CDS	11893832	11893916	.	-	0	Parent=Os08t0295300-01
Chr08	irgsp1_rep	CDS	11892333	11892427	.	-	2	Parent=Os08t0295300-01
Chr08	irgsp1_rep	CDS	11892200	11892232	.	-	0	Parent=Os08t0295300-01
Chr08	irgsp1_rep	CDS	11891788	11891874	.	-	0	Parent=Os08t0295300-01
Chr08	irgsp1_rep	CDS	11890751	11890843	.	-	0	Parent=Os08t0295300-01
Chr08	irgsp1_rep	CDS	11890091	11890183	.	-	0	Parent=Os08t0295300-01
Chr08	irgsp1_rep	CDS	11889791	11890012	.	-	0	Parent=Os08t0295300-01
Chr08	irgsp1_rep	CDS	11888713	11888784	.	-	0	Parent=Os08t0295300-01
Chr08	irgsp1_rep	CDS	11888392	11888463	.	-	0	Parent=Os08t0295300-01
Chr08	irgsp1_rep	CDS	11888083	11888178	.	-	0	Parent=Os08t0295300-01
Chr08	irgsp1_rep	three_prime_UTR	11887897	11888082	.	-	.	Parent=Os08t0295300-01
Chr08	irgsp1_rep	mRNA	11887939	11894446	.	-	.	ID=Os08t0295300-02;Name=Os08t0295300-02;Locus_id=Os08g0295300;Note=Similar to Threonyl-tRNA synthetase (Fragment).;Transcript_evidence=AK059095 (DDBJ%2C Best hit);ORF_evidence=Q8LPC9 (UniProt);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: threonyl-tRNA aminoacylation (GO:0006435),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: threonine-tRNA ligase activity (GO:0004829),Molecular Function: ATP binding (GO:0005524);InterPro=Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved domain (IPR002314),Threonyl-tRNA synthetase%2C class IIa (IPR002320),Anticodon-binding (IPR004154),Aminoacyl-tRNA synthetase%2C class II (IPR006195);NIAS_FLcDNA=001-022-C04;Expression=AK059095;TENOR=Os08t0295300-02;KEGG=Os08t0295300-02 (EC:6.1.1.3)
Chr08	irgsp1_rep	five_prime_UTR	11894446	11894446	.	-	.	Parent=Os08t0295300-02
Chr08	irgsp1_rep	CDS	11894411	11894445	.	-	0	Parent=Os08t0295300-02
Chr08	irgsp1_rep	CDS	11894221	11894317	.	-	1	Parent=Os08t0295300-02
Chr08	irgsp1_rep	CDS	11894020	11894106	.	-	0	Parent=Os08t0295300-02
Chr08	irgsp1_rep	CDS	11893832	11893916	.	-	0	Parent=Os08t0295300-02
Chr08	irgsp1_rep	CDS	11892333	11892427	.	-	2	Parent=Os08t0295300-02
Chr08	irgsp1_rep	CDS	11892200	11892232	.	-	0	Parent=Os08t0295300-02
Chr08	irgsp1_rep	CDS	11891788	11891874	.	-	0	Parent=Os08t0295300-02
Chr08	irgsp1_rep	CDS	11890751	11890843	.	-	0	Parent=Os08t0295300-02
Chr08	irgsp1_rep	CDS	11890091	11890183	.	-	0	Parent=Os08t0295300-02
Chr08	irgsp1_rep	CDS	11889791	11890012	.	-	0	Parent=Os08t0295300-02
Chr08	irgsp1_rep	CDS	11888713	11888784	.	-	0	Parent=Os08t0295300-02
Chr08	irgsp1_rep	CDS	11888392	11888463	.	-	0	Parent=Os08t0295300-02
Chr08	irgsp1_rep	CDS	11888083	11888178	.	-	0	Parent=Os08t0295300-02
Chr08	irgsp1_rep	three_prime_UTR	11887939	11888082	.	-	.	Parent=Os08t0295300-02
Chr08	irgsp1_rep	mRNA	11956662	11965968	.	-	.	ID=Os08t0296600-01;Name=Os08t0296600-01;Locus_id=Os08g0296600;Oryzabase Gene Symbol Synonym(s)=YR14%2C YR18%2C YR26;Note=NB-ARC domain containing protein.;Transcript_evidence=AK066438 (DDBJ%2C Best hit);ORF_evidence=C8TFE5 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013067B14;Oryzabase=15178;Expression=AK066438;TENOR=Os08t0296600-01;KEGG=Os08t0296600-01
Chr08	irgsp1_rep	five_prime_UTR	11965755	11965968	.	-	.	Parent=Os08t0296600-01
Chr08	irgsp1_rep	CDS	11965455	11965754	.	-	0	Parent=Os08t0296600-01
Chr08	irgsp1_rep	CDS	11960965	11963445	.	-	0	Parent=Os08t0296600-01
Chr08	irgsp1_rep	three_prime_UTR	11960934	11960964	.	-	.	Parent=Os08t0296600-01
Chr08	irgsp1_rep	three_prime_UTR	11956662	11957017	.	-	.	Parent=Os08t0296600-01
Chr08	irgsp1_rep	mRNA	11974692	11981929	.	+	.	ID=Os08t0296700-01;Name=Os08t0296700-01;Locus_id=Os08g0296700;Oryzabase Gene Symbol Synonym(s)=YR36;Note=NB-ARC domain containing protein.;Transcript_evidence=AK121298 (DDBJ%2C Best hit);ORF_evidence=B9G063 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J023110L09;Oryzabase=15182;Expression=AK121298;TENOR=Os08t0296700-01;KEGG=Os08t0296700-01
Chr08	irgsp1_rep	five_prime_UTR	11974692	11974847	.	+	.	Parent=Os08t0296700-01
Chr08	irgsp1_rep	CDS	11974848	11975147	.	+	0	Parent=Os08t0296700-01
Chr08	irgsp1_rep	CDS	11977055	11981366	.	+	0	Parent=Os08t0296700-01
Chr08	irgsp1_rep	CDS	11981538	11981653	.	+	2	Parent=Os08t0296700-01
Chr08	irgsp1_rep	three_prime_UTR	11981654	11981929	.	+	.	Parent=Os08t0296700-01
Chr08	irgsp1_rep	mRNA	11984667	11989799	.	-	.	ID=Os08t0296900-01;Name=Os08t0296900-01;Locus_id=Os08g0296900;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK073632 (DDBJ%2C Best hit);ORF_evidence=A2YTN6 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Phox/Bem1p (IPR000270),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026);NIAS_FLcDNA=J033046B22;TENOR=Os08t0296900-01
Chr08	irgsp1_rep	five_prime_UTR	11989421	11989799	.	-	.	Parent=Os08t0296900-01
Chr08	irgsp1_rep	CDS	11987254	11989420	.	-	0	Parent=Os08t0296900-01
Chr08	irgsp1_rep	CDS	11986739	11986896	.	-	2	Parent=Os08t0296900-01
Chr08	irgsp1_rep	three_prime_UTR	11986674	11986738	.	-	.	Parent=Os08t0296900-01
Chr08	irgsp1_rep	three_prime_UTR	11984667	11985185	.	-	.	Parent=Os08t0296900-01
Chr08	irgsp1_rep	mRNA	11984666	11985996	.	-	.	ID=Os08t0296900-02;Name=Os08t0296900-02;Locus_id=Os08g0296900;Note=Hypothetical gene.;Transcript_evidence=AK059721 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-032-H08;Expression=AK059721;TENOR=Os08t0296900-02;KEGG=Os08t0296900-02
Chr08	irgsp1_rep	five_prime_UTR	11985325	11985996	.	-	.	Parent=Os08t0296900-02
Chr08	irgsp1_rep	CDS	11985055	11985324	.	-	0	Parent=Os08t0296900-02
Chr08	irgsp1_rep	three_prime_UTR	11984666	11985054	.	-	.	Parent=Os08t0296900-02
Chr08	irgsp1_rep	mRNA	11984655	11988845	.	-	.	ID=Os08t0296900-03;Name=Os08t0296900-03;Locus_id=Os08g0296900;Note=Similar to Heat shock protein 70.;Transcript_evidence=AK067499 (DDBJ%2C Best hit);ORF_evidence=E5GCC3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Phox/Bem1p (IPR000270);NIAS_FLcDNA=J013110C13;TENOR=Os08t0296900-03
Chr08	irgsp1_rep	five_prime_UTR	11988662	11988845	.	-	.	Parent=Os08t0296900-03
Chr08	irgsp1_rep	CDS	11987254	11988661	.	-	0	Parent=Os08t0296900-03
Chr08	irgsp1_rep	CDS	11986739	11986896	.	-	2	Parent=Os08t0296900-03
Chr08	irgsp1_rep	three_prime_UTR	11986674	11986738	.	-	.	Parent=Os08t0296900-03
Chr08	irgsp1_rep	three_prime_UTR	11984655	11985185	.	-	.	Parent=Os08t0296900-03
Chr08	irgsp1_rep	mRNA	12043364	12045832	.	+	.	ID=Os08t0297500-01;Name=Os08t0297500-01;Locus_id=Os08g0297500;Note=Hypothetical conserved gene.;Transcript_evidence=AK241929 (DDBJ%2C Best hit);ORF_evidence=NP_001061479.2 (RefSeq);NIAS_FLcDNA=J075079A10;TENOR=Os08t0297500-01;KEGG=Os08t0297500-01
Chr08	irgsp1_rep	five_prime_UTR	12043364	12043365	.	+	.	Parent=Os08t0297500-01
Chr08	irgsp1_rep	CDS	12043366	12043647	.	+	0	Parent=Os08t0297500-01
Chr08	irgsp1_rep	three_prime_UTR	12043648	12045832	.	+	.	Parent=Os08t0297500-01
Chr08	irgsp1_rep	mRNA	12066869	12068457	.	+	.	ID=Os08t0297800-01;Name=Os08t0297800-01;Locus_id=Os08g0297800;Note=Sulfotransferase family protein.;Transcript_evidence=AK058698 (DDBJ%2C Best hit);ORF_evidence=B6STJ6 (UniProt);GO=Molecular Function: sulfotransferase activity (GO:0008146);InterPro=Sulfotransferase domain (IPR000863);NIAS_FLcDNA=001-019-C01;Expression=AK058698;TENOR=Os08t0297800-01;KEGG=Os08t0297800-01
Chr08	irgsp1_rep	five_prime_UTR	12066869	12066933	.	+	.	Parent=Os08t0297800-01
Chr08	irgsp1_rep	CDS	12066934	12067451	.	+	0	Parent=Os08t0297800-01
Chr08	irgsp1_rep	CDS	12067726	12068215	.	+	1	Parent=Os08t0297800-01
Chr08	irgsp1_rep	three_prime_UTR	12068216	12068457	.	+	.	Parent=Os08t0297800-01
Chr08	irgsp1_rep	mRNA	12111601	12112206	.	+	.	ID=Os08t0298500-00;Name=Os08t0298500-00;Locus_id=Os08g0298500;Note=Similar to nitrate and chloride transporter.;Transcript_evidence=BT040848 (DDBJ);ORF_evidence=NP_001152028.1 (RefSeq);TENOR=Os08t0298500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	12111601	12112206	.	+	0	Parent=Os08t0298500-00
Chr08	irgsp1_rep	mRNA	12115583	12121337	.	+	.	ID=Os08t0298700-01;Name=Os08t0298700-01;Locus_id=Os08g0298700;Oryzabase Gene Name Synonym(s)=Male sterility protein;Note=Similar to male sterility protein 2.;Transcript_evidence=AK242888 (DDBJ%2C Best hit);ORF_evidence=NP_001151388.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620);InterPro=Male sterility (IPR004262),Male sterility%2C NAD-binding (IPR013120),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J090079L06;Oryzabase=23048;TENOR=Os08t0298700-01;KEGG=Os08t0298700-01
Chr08	irgsp1_rep	five_prime_UTR	12115583	12115703	.	+	.	Parent=Os08t0298700-01
Chr08	irgsp1_rep	CDS	12115704	12115794	.	+	0	Parent=Os08t0298700-01
Chr08	irgsp1_rep	CDS	12115898	12116001	.	+	2	Parent=Os08t0298700-01
Chr08	irgsp1_rep	CDS	12116968	12117167	.	+	0	Parent=Os08t0298700-01
Chr08	irgsp1_rep	CDS	12117245	12117345	.	+	1	Parent=Os08t0298700-01
Chr08	irgsp1_rep	CDS	12117426	12117621	.	+	2	Parent=Os08t0298700-01
Chr08	irgsp1_rep	CDS	12117826	12117987	.	+	1	Parent=Os08t0298700-01
Chr08	irgsp1_rep	CDS	12118098	12118179	.	+	1	Parent=Os08t0298700-01
Chr08	irgsp1_rep	CDS	12118983	12119246	.	+	0	Parent=Os08t0298700-01
Chr08	irgsp1_rep	CDS	12120289	12120416	.	+	0	Parent=Os08t0298700-01
Chr08	irgsp1_rep	CDS	12121037	12121199	.	+	1	Parent=Os08t0298700-01
Chr08	irgsp1_rep	three_prime_UTR	12121200	12121337	.	+	.	Parent=Os08t0298700-01
Chr08	irgsp1_rep	mRNA	12132129	12133820	.	+	.	ID=Os08t0298800-01;Name=Os08t0298800-01;Locus_id=Os08g0298800;Note=Similar to cDNA clone:001-036-H04%2C full insert sequence.;Transcript_evidence=AK064272 (DDBJ%2C Best hit);ORF_evidence=B7E6Q5 (UniProt);NIAS_FLcDNA=002-105-E09;TENOR=Os08t0298800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	12132129	12132301	.	+	.	Parent=Os08t0298800-01
Chr08	irgsp1_rep	CDS	12132302	12132715	.	+	0	Parent=Os08t0298800-01
Chr08	irgsp1_rep	three_prime_UTR	12132716	12133820	.	+	.	Parent=Os08t0298800-01
Chr08	irgsp1_rep	mRNA	12143256	12147576	.	+	.	ID=Os08t0298901-01;Name=Os08t0298901-01;Locus_id=Os08g0298901;Note=Hypothetical conserved gene.;Transcript_evidence=AK288204 (DDBJ%2C Best hit);ORF_evidence=Q6YV39 (UniProt);NIAS_FLcDNA=J090008K16;TENOR=Os08t0298901-01;KEGG=Os08t0298901-01
Chr08	irgsp1_rep	five_prime_UTR	12143256	12145234	.	+	.	Parent=Os08t0298901-01
Chr08	irgsp1_rep	CDS	12145235	12145498	.	+	0	Parent=Os08t0298901-01
Chr08	irgsp1_rep	three_prime_UTR	12145499	12147576	.	+	.	Parent=Os08t0298901-01
Chr08	irgsp1_rep	mRNA	12170867	12177073	.	+	.	ID=Os08t0299000-01;Name=Os08t0299000-01;Locus_id=Os08g0299000;Note=Mediator of ErbB2-driven cell motility (Memo)%2C related domain containing protein.;Transcript_evidence=AK061379 (DDBJ%2C Best hit);ORF_evidence=C8TF04 (UniProt);InterPro=UPF0103/Mediator of ErbB2-driven cell motility (Memo-related) (IPR002737);NIAS_FLcDNA=006-304-G12;Expression=AK061379;TENOR=Os08t0299000-01;KEGG=Os08t0299000-01
Chr08	irgsp1_rep	five_prime_UTR	12170867	12170947	.	+	.	Parent=Os08t0299000-01
Chr08	irgsp1_rep	CDS	12170948	12170999	.	+	0	Parent=Os08t0299000-01
Chr08	irgsp1_rep	CDS	12172119	12172203	.	+	2	Parent=Os08t0299000-01
Chr08	irgsp1_rep	CDS	12172281	12172349	.	+	1	Parent=Os08t0299000-01
Chr08	irgsp1_rep	CDS	12172999	12173111	.	+	1	Parent=Os08t0299000-01
Chr08	irgsp1_rep	CDS	12174812	12174923	.	+	2	Parent=Os08t0299000-01
Chr08	irgsp1_rep	CDS	12175026	12175169	.	+	1	Parent=Os08t0299000-01
Chr08	irgsp1_rep	CDS	12176464	12176638	.	+	1	Parent=Os08t0299000-01
Chr08	irgsp1_rep	CDS	12176724	12176870	.	+	0	Parent=Os08t0299000-01
Chr08	irgsp1_rep	three_prime_UTR	12176871	12177073	.	+	.	Parent=Os08t0299000-01
Chr08	irgsp1_rep	mRNA	12170902	12177361	.	+	.	ID=Os08t0299000-02;Name=Os08t0299000-02;Locus_id=Os08g0299000;Note=Mediator of ErbB2-driven cell motility (Memo)%2C related domain containing protein.;Transcript_evidence=AK101640 (DDBJ%2C Best hit),AK099389 (DDBJ%2C Best hit);ORF_evidence=C8TF04 (UniProt);InterPro=UPF0103/Mediator of ErbB2-driven cell motility (Memo-related) (IPR002737);NIAS_FLcDNA=J033055I05,J033074E08;TENOR=Os08t0299000-02
Chr08	irgsp1_rep	five_prime_UTR	12170902	12170947	.	+	.	Parent=Os08t0299000-02
Chr08	irgsp1_rep	CDS	12170948	12170999	.	+	0	Parent=Os08t0299000-02
Chr08	irgsp1_rep	CDS	12172119	12172203	.	+	2	Parent=Os08t0299000-02
Chr08	irgsp1_rep	CDS	12172281	12172349	.	+	1	Parent=Os08t0299000-02
Chr08	irgsp1_rep	CDS	12172999	12173111	.	+	1	Parent=Os08t0299000-02
Chr08	irgsp1_rep	CDS	12174812	12174923	.	+	2	Parent=Os08t0299000-02
Chr08	irgsp1_rep	CDS	12175026	12175169	.	+	1	Parent=Os08t0299000-02
Chr08	irgsp1_rep	CDS	12176464	12176638	.	+	1	Parent=Os08t0299000-02
Chr08	irgsp1_rep	CDS	12176724	12176870	.	+	0	Parent=Os08t0299000-02
Chr08	irgsp1_rep	three_prime_UTR	12176871	12177361	.	+	.	Parent=Os08t0299000-02
Chr08	irgsp1_rep	mRNA	12248319	12249365	.	+	.	ID=Os08t0299200-01;Name=Os08t0299200-01;Locus_id=Os08g0299200;Note=Adenylate cyclase domain containing protein.;Transcript_evidence=AK241974 (DDBJ%2C Best hit);ORF_evidence=B6TQK5 (UniProt);GO=Biological Process: phosphate-containing compound metabolic process (GO:0006796);InterPro=CYTH domain (IPR008172),CYTH-like domain (IPR023577);NIAS_FLcDNA=J075096F13;TENOR=Os08t0299200-01;KEGG=Os08t0299200-01
Chr08	irgsp1_rep	five_prime_UTR	12248319	12248578	.	+	.	Parent=Os08t0299200-01
Chr08	irgsp1_rep	CDS	12248579	12249217	.	+	0	Parent=Os08t0299200-01
Chr08	irgsp1_rep	three_prime_UTR	12249218	12249365	.	+	.	Parent=Os08t0299200-01
Chr08	irgsp1_rep	mRNA	12256992	12258654	.	-	.	ID=Os08t0299300-01;Name=Os08t0299300-01;Locus_id=Os08g0299300;Note=Conserved hypothetical protein.;Transcript_evidence=AK241072 (DDBJ%2C Best hit);ORF_evidence=NP_001061486.2 (RefSeq);NIAS_FLcDNA=J065067B05;TENOR=Os08t0299300-01;KEGG=Os08t0299300-01
Chr08	irgsp1_rep	CDS	12258469	12258654	.	-	0	Parent=Os08t0299300-01
Chr08	irgsp1_rep	CDS	12258288	12258377	.	-	0	Parent=Os08t0299300-01
Chr08	irgsp1_rep	CDS	12258068	12258169	.	-	0	Parent=Os08t0299300-01
Chr08	irgsp1_rep	CDS	12257161	12257400	.	-	0	Parent=Os08t0299300-01
Chr08	irgsp1_rep	three_prime_UTR	12256992	12257160	.	-	.	Parent=Os08t0299300-01
Chr08	irgsp1_rep	mRNA	12266091	12269520	.	+	.	ID=Os08t0299400-01;Name=Os08t0299400-01;Locus_id=Os08g0299400;CGSNL Gene Symbol=MGD3;CGSNL Gene Name=MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 3;Oryzabase Gene Symbol Synonym(s)=OsMGD3;Oryzabase Gene Name Synonym(s)="Leucine-rich repeat%2C cysteine-containing subtype-containing protein"%2C MGDG synthase 3;Note=Similar to MGDG synthase type A.;Transcript_evidence=AK064148 (DDBJ%2C Best hit);ORF_evidence=B6SV07 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: glycolipid biosynthetic process (GO:0009247),Biological Process: lipid glycosylation (GO:0030259),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Glycosyl transferase%2C family 28%2C C-terminal (IPR007235),Diacylglycerol glucosyltransferase%2C N-terminal (IPR009695);NIAS_FLcDNA=002-103-C09;Oryzabase=22042;Expression=AK064148;TENOR=Os08t0299400-01;KEGG=Os08t0299400-01 (EC:2.4.1.46)
Chr08	irgsp1_rep	CDS	12266091	12266216	.	+	0	Parent=Os08t0299400-01
Chr08	irgsp1_rep	CDS	12266437	12266609	.	+	0	Parent=Os08t0299400-01
Chr08	irgsp1_rep	CDS	12266718	12266879	.	+	1	Parent=Os08t0299400-01
Chr08	irgsp1_rep	CDS	12266974	12267115	.	+	1	Parent=Os08t0299400-01
Chr08	irgsp1_rep	CDS	12267227	12267451	.	+	0	Parent=Os08t0299400-01
Chr08	irgsp1_rep	CDS	12267582	12267644	.	+	0	Parent=Os08t0299400-01
Chr08	irgsp1_rep	CDS	12267728	12267802	.	+	0	Parent=Os08t0299400-01
Chr08	irgsp1_rep	CDS	12269142	12269402	.	+	0	Parent=Os08t0299400-01
Chr08	irgsp1_rep	three_prime_UTR	12269403	12269520	.	+	.	Parent=Os08t0299400-01
Chr08	irgsp1_rep	mRNA	12272625	12277708	.	+	.	ID=Os08t0299600-01;Name=Os08t0299600-01;Locus_id=Os08g0299600;Note=Conserved hypothetical protein.;Transcript_evidence=AK107112 (DDBJ%2C Best hit);ORF_evidence=B8B9H5 (UniProt);NIAS_FLcDNA=002-123-A07;Oryzabase=17457;TENOR=Os08t0299600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	12272625	12273405	.	+	.	Parent=Os08t0299600-01
Chr08	irgsp1_rep	CDS	12273406	12273985	.	+	0	Parent=Os08t0299600-01
Chr08	irgsp1_rep	CDS	12274567	12274604	.	+	2	Parent=Os08t0299600-01
Chr08	irgsp1_rep	three_prime_UTR	12274605	12274810	.	+	.	Parent=Os08t0299600-01
Chr08	irgsp1_rep	three_prime_UTR	12274915	12274994	.	+	.	Parent=Os08t0299600-01
Chr08	irgsp1_rep	three_prime_UTR	12275070	12275134	.	+	.	Parent=Os08t0299600-01
Chr08	irgsp1_rep	three_prime_UTR	12277172	12277708	.	+	.	Parent=Os08t0299600-01
Chr08	irgsp1_rep	mRNA	12284998	12285894	.	+	.	ID=Os08t0299700-00;Name=Os08t0299700-00;Locus_id=Os08g0299700;Oryzabase Gene Symbol Synonym(s)=OsFbox435%2C Os_F0317;Oryzabase Gene Name Synonym(s)=F-box protein 435;Note=Hypothetical conserved gene.;Transcript_evidence=tplb0042j24 (Wheat FLcDNA);ORF_evidence=Q6YVN3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17206;TENOR=Os08t0299700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	12284998	12285894	.	+	0	Parent=Os08t0299700-00
Chr08	irgsp1_rep	mRNA	12297068	12300264	.	+	.	ID=Os08t0299801-01;Name=Os08t0299801-01;Locus_id=Os08g0299801;Note=Hypothetical gene.;Transcript_evidence=AK288745 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090064H11;TENOR=Os08t0299801-01;KEGG=Os08t0299801-01
Chr08	irgsp1_rep	five_prime_UTR	12297068	12299916	.	+	.	Parent=Os08t0299801-01
Chr08	irgsp1_rep	CDS	12299917	12300264	.	+	0	Parent=Os08t0299801-01
Chr08	irgsp1_rep	mRNA	12309659	12314786	.	+	.	ID=Os08t0300100-01;Name=Os08t0300100-01;Locus_id=Os08g0300100;Note=Conserved hypothetical protein.;Transcript_evidence=AK070196 (DDBJ%2C Best hit);ORF_evidence=NP_001042676.1 (RefSeq);NIAS_FLcDNA=J023041N13;TENOR=Os08t0300100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	12309659	12309931	.	+	.	Parent=Os08t0300100-01
Chr08	irgsp1_rep	five_prime_UTR	12311283	12311606	.	+	.	Parent=Os08t0300100-01
Chr08	irgsp1_rep	five_prime_UTR	12311813	12311893	.	+	.	Parent=Os08t0300100-01
Chr08	irgsp1_rep	five_prime_UTR	12311994	12312143	.	+	.	Parent=Os08t0300100-01
Chr08	irgsp1_rep	five_prime_UTR	12312360	12312470	.	+	.	Parent=Os08t0300100-01
Chr08	irgsp1_rep	five_prime_UTR	12312568	12312821	.	+	.	Parent=Os08t0300100-01
Chr08	irgsp1_rep	CDS	12312822	12313526	.	+	0	Parent=Os08t0300100-01
Chr08	irgsp1_rep	three_prime_UTR	12313527	12313956	.	+	.	Parent=Os08t0300100-01
Chr08	irgsp1_rep	three_prime_UTR	12314065	12314786	.	+	.	Parent=Os08t0300100-01
Chr08	irgsp1_rep	mRNA	12331546	12342182	.	-	.	ID=Os08t0300200-02;Name=Os08t0300200-02;Locus_id=Os08g0300200;CGSNL Gene Symbol=NTMC2T2.2;CGSNL Gene Name=N-TERMINAL-TM-C2 DOMAIN PROTEIN 2.2;Oryzabase Gene Symbol Synonym(s)=OsNTMC2T2.2;Oryzabase Gene Name Synonym(s)=N-terminal-TM-C2 domain protein 2.2%2C N-terminal trans- membrane and C2 domain protein 2.2%2C NTMC2 type 2.2 protein%2C NTMC2 family gene 2.2;Note=Similar to plant synaptotagmin.;Transcript_evidence=AK069706 (DDBJ%2C Best hit),AK119574 (DDBJ%2C Best hit);ORF_evidence=XP_002461108.1 (RefSeq);NIAS_FLcDNA=J023028A22,002-117-B03;Oryzabase=22125;TENOR=Os08t0300200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	12341978	12342182	.	-	.	Parent=Os08t0300200-02
Chr08	irgsp1_rep	CDS	12341873	12341977	.	-	0	Parent=Os08t0300200-02
Chr08	irgsp1_rep	CDS	12338628	12338731	.	-	0	Parent=Os08t0300200-02
Chr08	irgsp1_rep	CDS	12338523	12338535	.	-	1	Parent=Os08t0300200-02
Chr08	irgsp1_rep	three_prime_UTR	12338485	12338522	.	-	.	Parent=Os08t0300200-02
Chr08	irgsp1_rep	three_prime_UTR	12338209	12338329	.	-	.	Parent=Os08t0300200-02
Chr08	irgsp1_rep	three_prime_UTR	12335242	12335363	.	-	.	Parent=Os08t0300200-02
Chr08	irgsp1_rep	three_prime_UTR	12334234	12334335	.	-	.	Parent=Os08t0300200-02
Chr08	irgsp1_rep	three_prime_UTR	12334081	12334155	.	-	.	Parent=Os08t0300200-02
Chr08	irgsp1_rep	three_prime_UTR	12333922	12334001	.	-	.	Parent=Os08t0300200-02
Chr08	irgsp1_rep	three_prime_UTR	12333686	12333836	.	-	.	Parent=Os08t0300200-02
Chr08	irgsp1_rep	three_prime_UTR	12333366	12333596	.	-	.	Parent=Os08t0300200-02
Chr08	irgsp1_rep	three_prime_UTR	12332891	12333163	.	-	.	Parent=Os08t0300200-02
Chr08	irgsp1_rep	three_prime_UTR	12332672	12332785	.	-	.	Parent=Os08t0300200-02
Chr08	irgsp1_rep	three_prime_UTR	12331546	12332064	.	-	.	Parent=Os08t0300200-02
Chr08	irgsp1_rep	mRNA	12350726	12356984	.	+	.	ID=Os08t0300300-01;Name=Os08t0300300-01;Locus_id=Os08g0300300;CGSNL Gene Symbol=CBSCLC6;CGSNL Gene Name=CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsCBSCLC6%2C OsCBSCLC6a%2C OsCBSCLC6b;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSCLC6%2C CBS domain containing protein OsCBSCLC6%2C CBS domain containing protein 6;Note=Similar to Chloride channel-like protein Osclc.;Transcript_evidence=AK066375 (DDBJ%2C Best hit);ORF_evidence=Q2VBU9 (UniProt);GO=Biological Process: chloride transport (GO:0006821),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: ion channel activity (GO:0005216),Molecular Function: voltage-gated chloride channel activity (GO:0005247),Molecular Function: protein binding (GO:0005515);InterPro=Cystathionine beta-synthase%2C core (IPR000644),Chloride channel%2C voltage gated (IPR001807),Chloride channel ClC-plant (IPR002251),Chloride channel%2C core (IPR014743);NIAS_FLcDNA=J013064L19;Oryzabase=10335;TENOR=Os08t0300300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	12350726	12350759	.	+	.	Parent=Os08t0300300-01
Chr08	irgsp1_rep	CDS	12350760	12350920	.	+	0	Parent=Os08t0300300-01
Chr08	irgsp1_rep	CDS	12351435	12351635	.	+	1	Parent=Os08t0300300-01
Chr08	irgsp1_rep	CDS	12351911	12352088	.	+	1	Parent=Os08t0300300-01
Chr08	irgsp1_rep	CDS	12354443	12354705	.	+	0	Parent=Os08t0300300-01
Chr08	irgsp1_rep	CDS	12354838	12355116	.	+	1	Parent=Os08t0300300-01
Chr08	irgsp1_rep	CDS	12355287	12356424	.	+	1	Parent=Os08t0300300-01
Chr08	irgsp1_rep	CDS	12356545	12356715	.	+	0	Parent=Os08t0300300-01
Chr08	irgsp1_rep	three_prime_UTR	12356716	12356984	.	+	.	Parent=Os08t0300300-01
Chr08	irgsp1_rep	mRNA	12350802	12356418	.	-	.	ID=Os08t0300333-00;Name=Os08t0300333-00;Locus_id=Os08g0300333;Note=Hypothetical protein.;Transcript_evidence=tplb0055l07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0300333-00
Chr08	irgsp1_rep	CDS	12355705	12356418	.	-	0	Parent=Os08t0300333-00
Chr08	irgsp1_rep	three_prime_UTR	12355338	12355704	.	-	.	Parent=Os08t0300333-00
Chr08	irgsp1_rep	three_prime_UTR	12354823	12355170	.	-	.	Parent=Os08t0300333-00
Chr08	irgsp1_rep	three_prime_UTR	12354436	12354690	.	-	.	Parent=Os08t0300333-00
Chr08	irgsp1_rep	three_prime_UTR	12351875	12352080	.	-	.	Parent=Os08t0300333-00
Chr08	irgsp1_rep	three_prime_UTR	12351448	12351594	.	-	.	Parent=Os08t0300333-00
Chr08	irgsp1_rep	three_prime_UTR	12350802	12350933	.	-	.	Parent=Os08t0300333-00
Chr08	irgsp1_rep	mRNA	12358711	12359628	.	+	.	ID=Os08t0300366-00;Name=Os08t0300366-00;Locus_id=Os08g0300366;CGSNL Gene Symbol=CTZFP8;CGSNL Gene Name=COLD TOLERANCE ZINC FINGER PROTEIN IN CHROMOSOME 8;Oryzabase Gene Symbol Synonym(s)=OsCTZFP8;Oryzabase Gene Name Synonym(s)=cold tolerance zinc finger protein in Chromosome 8;Note=Zinc finger%2C C2H2 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8B9I3 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);Oryzabase=22434;TENOR=Os08t0300366-00
Chr08	irgsp1_rep	CDS	12358711	12358905	.	+	0	Parent=Os08t0300366-00
Chr08	irgsp1_rep	CDS	12359395	12359628	.	+	0	Parent=Os08t0300366-00
Chr08	irgsp1_rep	mRNA	12370079	12372150	.	+	.	ID=Os08t0300501-00;Name=Os08t0300501-00;Locus_id=Os08g0300501;Note=Conserved hypothetical protein.;Transcript_evidence=CT836029 (DDBJ%2C Best hit);ORF_evidence=F2CUM2 (UniProt);TENOR=Os08t0300501-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	12370079	12370132	.	+	.	Parent=Os08t0300501-00
Chr08	irgsp1_rep	five_prime_UTR	12370916	12370990	.	+	.	Parent=Os08t0300501-00
Chr08	irgsp1_rep	five_prime_UTR	12371074	12371239	.	+	.	Parent=Os08t0300501-00
Chr08	irgsp1_rep	CDS	12371240	12371497	.	+	0	Parent=Os08t0300501-00
Chr08	irgsp1_rep	three_prime_UTR	12371498	12372150	.	+	.	Parent=Os08t0300501-00
Chr08	irgsp1_rep	mRNA	12381583	12390393	.	+	.	ID=Os08t0300700-01;Name=Os08t0300700-01;Locus_id=Os08g0300700;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK101762 (DDBJ%2C Best hit);ORF_evidence=C8TEX7 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033064B21;Expression=AK101762;TENOR=Os08t0300700-01;KEGG=Os08t0300700-01
Chr08	irgsp1_rep	five_prime_UTR	12381583	12381717	.	+	.	Parent=Os08t0300700-01
Chr08	irgsp1_rep	CDS	12381718	12383925	.	+	0	Parent=Os08t0300700-01
Chr08	irgsp1_rep	three_prime_UTR	12383926	12383972	.	+	.	Parent=Os08t0300700-01
Chr08	irgsp1_rep	three_prime_UTR	12385208	12385466	.	+	.	Parent=Os08t0300700-01
Chr08	irgsp1_rep	three_prime_UTR	12385856	12386150	.	+	.	Parent=Os08t0300700-01
Chr08	irgsp1_rep	three_prime_UTR	12386807	12387003	.	+	.	Parent=Os08t0300700-01
Chr08	irgsp1_rep	three_prime_UTR	12387103	12387188	.	+	.	Parent=Os08t0300700-01
Chr08	irgsp1_rep	three_prime_UTR	12390134	12390393	.	+	.	Parent=Os08t0300700-01
Chr08	irgsp1_rep	mRNA	12395029	12397313	.	-	.	ID=Os08t0300901-01;Name=Os08t0300901-01;Locus_id=Os08g0300901;Note=Hypothetical gene.;Transcript_evidence=AK241815 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065211D19;TENOR=Os08t0300901-01;KEGG=Os08t0300901-01
Chr08	irgsp1_rep	CDS	12397098	12397313	.	-	0	Parent=Os08t0300901-01
Chr08	irgsp1_rep	three_prime_UTR	12397040	12397097	.	-	.	Parent=Os08t0300901-01
Chr08	irgsp1_rep	three_prime_UTR	12395029	12395889	.	-	.	Parent=Os08t0300901-01
Chr08	irgsp1_rep	mRNA	12411938	12424753	.	+	.	ID=Os08t0301500-01;Name=Os08t0301500-01;Locus_id=Os08g0301500;CGSNL Gene Symbol=SPS8;CGSNL Gene Name=SUCROSE PHOSPHATE SYNTHASE 8;Oryzabase Gene Symbol Synonym(s)=OsSPS8%2C OsSPS4%2C SPS4;Oryzabase Gene Name Synonym(s)=sucrose phosphate synthase 8;Note=Similar to Sucrose-phosphate synthase 2 (EC 2.4.1.14) (Fragment).;Transcript_evidence=AK101676 (DDBJ%2C Best hit);ORF_evidence=Q6SXU0 (UniProt);GO=Biological Process: sucrose metabolic process (GO:0005985),Biological Process: biosynthetic process (GO:0009058),Molecular Function: sucrose-phosphate synthase activity (GO:0046524);InterPro=Sucrose synthase (IPR000368),Glycosyl transferase%2C family 1 (IPR001296),Sucrose-phosphate synthase (IPR006380),Sucrose phosphate synthase%2C plant (IPR012819);NIAS_FLcDNA=J033058F14;Oryzabase=11204;Expression=AK101676;TENOR=Os08t0301500-01;KEGG=Os08t0301500-01 (EC:2.4.1.14)
Chr08	irgsp1_rep	five_prime_UTR	12411938	12412131	.	+	.	Parent=Os08t0301500-01
Chr08	irgsp1_rep	CDS	12412132	12412371	.	+	0	Parent=Os08t0301500-01
Chr08	irgsp1_rep	CDS	12412486	12412575	.	+	0	Parent=Os08t0301500-01
Chr08	irgsp1_rep	CDS	12414130	12414374	.	+	0	Parent=Os08t0301500-01
Chr08	irgsp1_rep	CDS	12416274	12416337	.	+	1	Parent=Os08t0301500-01
Chr08	irgsp1_rep	CDS	12416512	12417210	.	+	0	Parent=Os08t0301500-01
Chr08	irgsp1_rep	CDS	12417305	12417418	.	+	0	Parent=Os08t0301500-01
Chr08	irgsp1_rep	CDS	12417529	12417660	.	+	0	Parent=Os08t0301500-01
Chr08	irgsp1_rep	CDS	12417836	12418012	.	+	0	Parent=Os08t0301500-01
Chr08	irgsp1_rep	CDS	12418327	12418380	.	+	0	Parent=Os08t0301500-01
Chr08	irgsp1_rep	CDS	12418472	12418534	.	+	0	Parent=Os08t0301500-01
Chr08	irgsp1_rep	CDS	12418638	12419549	.	+	0	Parent=Os08t0301500-01
Chr08	irgsp1_rep	CDS	12419650	12419777	.	+	0	Parent=Os08t0301500-01
Chr08	irgsp1_rep	CDS	12420922	12421204	.	+	1	Parent=Os08t0301500-01
Chr08	irgsp1_rep	three_prime_UTR	12421205	12421224	.	+	.	Parent=Os08t0301500-01
Chr08	irgsp1_rep	three_prime_UTR	12424312	12424753	.	+	.	Parent=Os08t0301500-01
Chr08	irgsp1_rep	mRNA	12417306	12417602	.	-	.	ID=Os08t0301551-00;Name=Os08t0301551-00;Locus_id=Os08g0301551;Note=Non-protein coding transcript.;Transcript_evidence=AJ238715 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0301551-00
Chr08	irgsp1_rep	exon	12417529	12417602	.	-	.	Parent=Os08t0301551-00
Chr08	irgsp1_rep	exon	12417306	12417418	.	-	.	Parent=Os08t0301551-00
Chr08	irgsp1_rep	mRNA	12430023	12431026	.	-	.	ID=Os08t0301600-01;Name=Os08t0301600-01;Locus_id=Os08g0301600;Note=Conserved hypothetical protein.;Transcript_evidence=AK072190 (DDBJ%2C Best hit);ORF_evidence=B8B9I8 (UniProt);NIAS_FLcDNA=J013146F18;Expression=AK072190;TENOR=Os08t0301600-01;KEGG=Os08t0301600-01
Chr08	irgsp1_rep	five_prime_UTR	12430864	12431026	.	-	.	Parent=Os08t0301600-01
Chr08	irgsp1_rep	CDS	12430447	12430863	.	-	0	Parent=Os08t0301600-01
Chr08	irgsp1_rep	three_prime_UTR	12430023	12430446	.	-	.	Parent=Os08t0301600-01
Chr08	irgsp1_rep	mRNA	12455954	12457748	.	+	.	ID=Os08t0302000-01;Name=Os08t0302000-01;Locus_id=Os08g0302000;Oryzabase Gene Symbol Synonym(s)=prx118;Oryzabase Gene Name Synonym(s)=class III peroxidase 118;Note=Similar to Peroxidase 40 precursor (EC 1.11.1.7) (Atperox P40).;Transcript_evidence=AK106760 (DDBJ%2C Best hit);ORF_evidence=B4FTQ3 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=002-115-D11;Oryzabase=14635;Expression=AK106760;TENOR=Os08t0302000-01;KEGG=Os08t0302000-01 (EC:1.11.1.7)
Chr08	irgsp1_rep	five_prime_UTR	12455954	12456049	.	+	.	Parent=Os08t0302000-01
Chr08	irgsp1_rep	CDS	12456050	12456364	.	+	0	Parent=Os08t0302000-01
Chr08	irgsp1_rep	CDS	12456460	12456651	.	+	0	Parent=Os08t0302000-01
Chr08	irgsp1_rep	CDS	12456762	12456927	.	+	0	Parent=Os08t0302000-01
Chr08	irgsp1_rep	CDS	12457013	12457443	.	+	2	Parent=Os08t0302000-01
Chr08	irgsp1_rep	three_prime_UTR	12457444	12457748	.	+	.	Parent=Os08t0302000-01
Chr08	irgsp1_rep	mRNA	12457704	12458508	.	-	.	ID=Os08t0302100-01;Name=Os08t0302100-01;Locus_id=Os08g0302100;Note=Hypothetical protein.;Transcript_evidence=AK072437 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023103D24;Expression=AK072437;TENOR=Os08t0302100-01;KEGG=Os08t0302100-01
Chr08	irgsp1_rep	five_prime_UTR	12458093	12458508	.	-	.	Parent=Os08t0302100-01
Chr08	irgsp1_rep	CDS	12457820	12458092	.	-	0	Parent=Os08t0302100-01
Chr08	irgsp1_rep	three_prime_UTR	12457704	12457819	.	-	.	Parent=Os08t0302100-01
Chr08	irgsp1_rep	mRNA	12710914	12718933	.	+	.	ID=Os08t0304900-01;Name=Os08t0304900-01;Locus_id=Os08g0304900;Oryzabase Gene Symbol Synonym(s)=BIP126;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 126%2C BRI1-interacting protein 126%2C brassinosteroid receptor kinase-interacting protein 126;Note=Similar to AtMMH-1 protein (F6D8.28 protein).;Transcript_evidence=AK063295 (DDBJ%2C Best hit);ORF_evidence=NP_564608.1 (RefSeq);GO=Biological Process: DNA repair (GO:0006281),Biological Process: base-excision repair (GO:0006284),Biological Process: nucleotide-excision repair (GO:0006289),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: damaged DNA binding (GO:0003684),Molecular Function: DNA-(apurinic or apyrimidinic site) lyase activity (GO:0003906),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidized purine base lesion DNA N-glycosylase activity (GO:0008534),Molecular Function: hydrolase activity%2C hydrolyzing N-glycosyl compounds (GO:0016799);InterPro=DNA glycosylase/AP lyase (IPR000191),Ribosomal protein S13-like%2C H2TH (IPR010979),DNA glycosylase/AP lyase%2C catalytic domain (IPR012319),DNA glycosylase/AP lyase%2C H2TH DNA-binding (IPR015886);NIAS_FLcDNA=001-113-E09;Oryzabase=13694;Expression=AK063295;TENOR=Os08t0304900-01;KEGG=Os08t0304900-01 (EC:3.2.2.23%2C EC:4.2.99.18)
Chr08	irgsp1_rep	five_prime_UTR	12710914	12710928	.	+	.	Parent=Os08t0304900-01
Chr08	irgsp1_rep	CDS	12710929	12711157	.	+	0	Parent=Os08t0304900-01
Chr08	irgsp1_rep	CDS	12712241	12712292	.	+	2	Parent=Os08t0304900-01
Chr08	irgsp1_rep	CDS	12714013	12714070	.	+	1	Parent=Os08t0304900-01
Chr08	irgsp1_rep	CDS	12714846	12714914	.	+	0	Parent=Os08t0304900-01
Chr08	irgsp1_rep	CDS	12715006	12715131	.	+	0	Parent=Os08t0304900-01
Chr08	irgsp1_rep	CDS	12715448	12715498	.	+	0	Parent=Os08t0304900-01
Chr08	irgsp1_rep	CDS	12717005	12717082	.	+	0	Parent=Os08t0304900-01
Chr08	irgsp1_rep	CDS	12717855	12717938	.	+	0	Parent=Os08t0304900-01
Chr08	irgsp1_rep	CDS	12718035	12718070	.	+	0	Parent=Os08t0304900-01
Chr08	irgsp1_rep	CDS	12718158	12718604	.	+	0	Parent=Os08t0304900-01
Chr08	irgsp1_rep	three_prime_UTR	12718605	12718933	.	+	.	Parent=Os08t0304900-01
Chr08	irgsp1_rep	mRNA	12719378	12722616	.	-	.	ID=Os08t0305000-01;Name=Os08t0305000-01;Locus_id=Os08g0305000;Note=Conserved hypothetical protein.;Transcript_evidence=AK107492 (DDBJ%2C Best hit);ORF_evidence=A2YTS2 (UniProt);NIAS_FLcDNA=002-129-D03;Expression=AK107492;TENOR=Os08t0305000-01;KEGG=Os08t0305000-01
Chr08	irgsp1_rep	five_prime_UTR	12722241	12722616	.	-	.	Parent=Os08t0305000-01
Chr08	irgsp1_rep	CDS	12722154	12722240	.	-	0	Parent=Os08t0305000-01
Chr08	irgsp1_rep	CDS	12720104	12720310	.	-	0	Parent=Os08t0305000-01
Chr08	irgsp1_rep	three_prime_UTR	12720021	12720103	.	-	.	Parent=Os08t0305000-01
Chr08	irgsp1_rep	three_prime_UTR	12719378	12719725	.	-	.	Parent=Os08t0305000-01
Chr08	irgsp1_rep	mRNA	12719462	12722581	.	-	.	ID=Os08t0305000-02;Name=Os08t0305000-02;Locus_id=Os08g0305000;Note=Conserved hypothetical protein.;Transcript_evidence=AK102896 (DDBJ%2C Best hit);ORF_evidence=A2YTS2 (UniProt);NIAS_FLcDNA=J033112O06;Expression=AK102896;TENOR=Os08t0305000-02;KEGG=Os08t0305000-02
Chr08	irgsp1_rep	five_prime_UTR	12722241	12722581	.	-	.	Parent=Os08t0305000-02
Chr08	irgsp1_rep	CDS	12722154	12722240	.	-	0	Parent=Os08t0305000-02
Chr08	irgsp1_rep	CDS	12720104	12720310	.	-	0	Parent=Os08t0305000-02
Chr08	irgsp1_rep	three_prime_UTR	12720021	12720103	.	-	.	Parent=Os08t0305000-02
Chr08	irgsp1_rep	three_prime_UTR	12719462	12719725	.	-	.	Parent=Os08t0305000-02
Chr08	irgsp1_rep	mRNA	12720777	12721346	.	+	.	ID=Os08t0305100-00;Name=Os08t0305100-00;Locus_id=Os08g0305100;Note=Hypothetical protein.;Transcript_evidence=BT086332 (DDBJ);ORF_evidence=GeneMark;TENOR=Os08t0305100-00
Chr08	irgsp1_rep	CDS	12720777	12721346	.	+	0	Parent=Os08t0305100-00
Chr08	irgsp1_rep	mRNA	12724377	12732600	.	-	.	ID=Os08t0305300-01;Name=Os08t0305300-01;Locus_id=Os08g0305300;Note=Protein prenyltransferase domain containing protein.;Transcript_evidence=AK100410 (DDBJ%2C Best hit);ORF_evidence=Q69RW4 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Tetratricopeptide-like helical (IPR011990),Telomerase activating protein Est1 (IPR019458);NIAS_FLcDNA=J023087H17;Expression=AK100410;TENOR=Os08t0305300-01;KEGG=Os08t0305300-01
Chr08	irgsp1_rep	five_prime_UTR	12732311	12732600	.	-	.	Parent=Os08t0305300-01
Chr08	irgsp1_rep	five_prime_UTR	12732001	12732028	.	-	.	Parent=Os08t0305300-01
Chr08	irgsp1_rep	CDS	12731926	12732000	.	-	0	Parent=Os08t0305300-01
Chr08	irgsp1_rep	CDS	12729680	12730252	.	-	0	Parent=Os08t0305300-01
Chr08	irgsp1_rep	CDS	12729449	12729571	.	-	0	Parent=Os08t0305300-01
Chr08	irgsp1_rep	CDS	12727978	12728219	.	-	0	Parent=Os08t0305300-01
Chr08	irgsp1_rep	CDS	12725852	12727895	.	-	1	Parent=Os08t0305300-01
Chr08	irgsp1_rep	three_prime_UTR	12725834	12725851	.	-	.	Parent=Os08t0305300-01
Chr08	irgsp1_rep	three_prime_UTR	12725569	12725707	.	-	.	Parent=Os08t0305300-01
Chr08	irgsp1_rep	three_prime_UTR	12724377	12724844	.	-	.	Parent=Os08t0305300-01
Chr08	irgsp1_rep	mRNA	12724305	12729939	.	-	.	ID=Os08t0305300-02;Name=Os08t0305300-02;Locus_id=Os08g0305300;Note=Hypothetical conserved gene.;Transcript_evidence=AK105754 (DDBJ%2C Best hit);ORF_evidence=Q69RW4 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Tetratricopeptide-like helical (IPR011990),Telomerase activating protein Est1 (IPR019458);NIAS_FLcDNA=001-202-C07;Expression=AK105754;TENOR=Os08t0305300-02;KEGG=Os08t0305300-02
Chr08	irgsp1_rep	five_prime_UTR	12729938	12729939	.	-	.	Parent=Os08t0305300-02
Chr08	irgsp1_rep	CDS	12729680	12729937	.	-	0	Parent=Os08t0305300-02
Chr08	irgsp1_rep	CDS	12729449	12729571	.	-	0	Parent=Os08t0305300-02
Chr08	irgsp1_rep	CDS	12727978	12728219	.	-	0	Parent=Os08t0305300-02
Chr08	irgsp1_rep	CDS	12725852	12727895	.	-	1	Parent=Os08t0305300-02
Chr08	irgsp1_rep	three_prime_UTR	12725834	12725851	.	-	.	Parent=Os08t0305300-02
Chr08	irgsp1_rep	three_prime_UTR	12725569	12725707	.	-	.	Parent=Os08t0305300-02
Chr08	irgsp1_rep	three_prime_UTR	12724305	12724844	.	-	.	Parent=Os08t0305300-02
Chr08	irgsp1_rep	mRNA	12831054	12835606	.	+	.	ID=Os08t0307000-01;Name=Os08t0307000-01;Locus_id=Os08g0307000;Note=Conserved hypothetical protein.;Transcript_evidence=AK101010 (DDBJ%2C Best hit);ORF_evidence=NP_001048122.1 (RefSeq);NIAS_FLcDNA=J023148I24;Expression=AK101010;TENOR=Os08t0307000-01;KEGG=Os08t0307000-01
Chr08	irgsp1_rep	five_prime_UTR	12831054	12831675	.	+	.	Parent=Os08t0307000-01
Chr08	irgsp1_rep	CDS	12831676	12831967	.	+	0	Parent=Os08t0307000-01
Chr08	irgsp1_rep	CDS	12832065	12832096	.	+	2	Parent=Os08t0307000-01
Chr08	irgsp1_rep	three_prime_UTR	12832097	12832167	.	+	.	Parent=Os08t0307000-01
Chr08	irgsp1_rep	three_prime_UTR	12832347	12832446	.	+	.	Parent=Os08t0307000-01
Chr08	irgsp1_rep	three_prime_UTR	12832588	12835606	.	+	.	Parent=Os08t0307000-01
Chr08	irgsp1_rep	mRNA	12845471	12850286	.	+	.	ID=Os08t0307300-01;Name=Os08t0307300-01;Locus_id=Os08g0307300;Note=Similar to 25.3 kDa vesicle transport protein.;Transcript_evidence=AK240832 (DDBJ%2C Best hit);ORF_evidence=C8TFQ4 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: integral to membrane (GO:0016021);InterPro=Longin (IPR010908),Longin-like (IPR011012);NIAS_FLcDNA=J065014M20;TENOR=Os08t0307300-01;KEGG=Os08t0307300-01
Chr08	irgsp1_rep	five_prime_UTR	12845471	12845608	.	+	.	Parent=Os08t0307300-01
Chr08	irgsp1_rep	five_prime_UTR	12845713	12845866	.	+	.	Parent=Os08t0307300-01
Chr08	irgsp1_rep	five_prime_UTR	12846440	12846540	.	+	.	Parent=Os08t0307300-01
Chr08	irgsp1_rep	five_prime_UTR	12846640	12846991	.	+	.	Parent=Os08t0307300-01
Chr08	irgsp1_rep	five_prime_UTR	12847929	12847979	.	+	.	Parent=Os08t0307300-01
Chr08	irgsp1_rep	CDS	12847980	12848167	.	+	0	Parent=Os08t0307300-01
Chr08	irgsp1_rep	CDS	12848717	12848877	.	+	1	Parent=Os08t0307300-01
Chr08	irgsp1_rep	CDS	12849365	12849492	.	+	2	Parent=Os08t0307300-01
Chr08	irgsp1_rep	three_prime_UTR	12849493	12850286	.	+	.	Parent=Os08t0307300-01
Chr08	irgsp1_rep	mRNA	12854857	12874470	.	-	.	ID=Os08t0307400-01;Name=Os08t0307400-01;Locus_id=Os08g0307400;Note=Similar to Phosphatidylinositol 3-kinase 1.;Transcript_evidence=AK111693 (DDBJ%2C Best hit);ORF_evidence=Q2VIS2 (UniProt);GO=Biological Process: phosphatidylinositol phosphorylation (GO:0046854),Biological Process: phosphatidylinositol-mediated signaling (GO:0048015),Cellular Component: phosphatidylinositol 3-kinase complex (GO:0005942),Molecular Function: inositol or phosphatidylinositol kinase activity (GO:0004428),Molecular Function: protein binding (GO:0005515),Molecular Function: 1-phosphatidylinositol-3-kinase activity (GO:0016303);InterPro=Phosphoinositide 3-kinase%2C C2 (IPR002420),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),Phosphatidylinositol Kinase (IPR015433);NIAS_FLcDNA=J023004E13;Expression=AK111693;TENOR=Os08t0307400-01;KEGG=Os08t0307400-01 (EC:2.7.1.137)
Chr08	irgsp1_rep	five_prime_UTR	12873294	12874470	.	-	.	Parent=Os08t0307400-01
Chr08	irgsp1_rep	five_prime_UTR	12871575	12871969	.	-	.	Parent=Os08t0307400-01
Chr08	irgsp1_rep	five_prime_UTR	12871384	12871400	.	-	.	Parent=Os08t0307400-01
Chr08	irgsp1_rep	CDS	12871236	12871383	.	-	0	Parent=Os08t0307400-01
Chr08	irgsp1_rep	CDS	12869108	12869204	.	-	2	Parent=Os08t0307400-01
Chr08	irgsp1_rep	CDS	12868891	12868987	.	-	1	Parent=Os08t0307400-01
Chr08	irgsp1_rep	CDS	12865541	12865702	.	-	0	Parent=Os08t0307400-01
Chr08	irgsp1_rep	CDS	12865332	12865413	.	-	0	Parent=Os08t0307400-01
Chr08	irgsp1_rep	CDS	12864701	12864756	.	-	2	Parent=Os08t0307400-01
Chr08	irgsp1_rep	three_prime_UTR	12864566	12864700	.	-	.	Parent=Os08t0307400-01
Chr08	irgsp1_rep	three_prime_UTR	12864088	12864235	.	-	.	Parent=Os08t0307400-01
Chr08	irgsp1_rep	three_prime_UTR	12863350	12863445	.	-	.	Parent=Os08t0307400-01
Chr08	irgsp1_rep	three_prime_UTR	12862859	12862994	.	-	.	Parent=Os08t0307400-01
Chr08	irgsp1_rep	three_prime_UTR	12861411	12861532	.	-	.	Parent=Os08t0307400-01
Chr08	irgsp1_rep	three_prime_UTR	12861120	12861301	.	-	.	Parent=Os08t0307400-01
Chr08	irgsp1_rep	three_prime_UTR	12860787	12860957	.	-	.	Parent=Os08t0307400-01
Chr08	irgsp1_rep	three_prime_UTR	12860561	12860698	.	-	.	Parent=Os08t0307400-01
Chr08	irgsp1_rep	three_prime_UTR	12858088	12858242	.	-	.	Parent=Os08t0307400-01
Chr08	irgsp1_rep	three_prime_UTR	12856578	12856730	.	-	.	Parent=Os08t0307400-01
Chr08	irgsp1_rep	three_prime_UTR	12856350	12856488	.	-	.	Parent=Os08t0307400-01
Chr08	irgsp1_rep	three_prime_UTR	12854857	12855120	.	-	.	Parent=Os08t0307400-01
Chr08	irgsp1_rep	mRNA	12854498	12874430	.	-	.	ID=Os08t0307400-02;Name=Os08t0307400-02;Locus_id=Os08g0307400;Note=Similar to Phosphatidylinositol 3-kinase%2C root isoform (EC 2.7.1.137) (PI3- kinase) (PtdIns-3-kinase) (PI3K) (SPI3K-5).;Transcript_evidence=AK111577 (DDBJ%2C Best hit);ORF_evidence=Q2VIS2 (UniProt);GO=Biological Process: phosphatidylinositol phosphorylation (GO:0046854),Biological Process: phosphatidylinositol-mediated signaling (GO:0048015),Cellular Component: phosphatidylinositol 3-kinase complex (GO:0005942),Molecular Function: inositol or phosphatidylinositol kinase activity (GO:0004428),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515),Molecular Function: 1-phosphatidylinositol-3-kinase activity (GO:0016303),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Phosphatidylinositol 3-/4-kinase%2C catalytic (IPR000403),Phosphoinositide 3-kinase%2C accessory (PIK) domain (IPR001263),Phosphoinositide 3-kinase%2C C2 (IPR002420),Phosphatidylinositol 3-kinase%2C Vps34 type (IPR008290),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),Protein kinase-like domain (IPR011009),Phosphatidylinositol Kinase (IPR015433),Armadillo-type fold (IPR016024),Phosphatidylinositol 3/4-kinase%2C conserved site (IPR018936);NIAS_FLcDNA=J013075F18;Expression=AK111577;TENOR=Os08t0307400-02;KEGG=Os08t0307400-02 (EC:2.7.1.137)
Chr08	irgsp1_rep	five_prime_UTR	12873294	12874430	.	-	.	Parent=Os08t0307400-02
Chr08	irgsp1_rep	five_prime_UTR	12871575	12871969	.	-	.	Parent=Os08t0307400-02
Chr08	irgsp1_rep	five_prime_UTR	12871384	12871400	.	-	.	Parent=Os08t0307400-02
Chr08	irgsp1_rep	CDS	12871236	12871383	.	-	0	Parent=Os08t0307400-02
Chr08	irgsp1_rep	CDS	12869108	12869204	.	-	2	Parent=Os08t0307400-02
Chr08	irgsp1_rep	CDS	12868891	12868987	.	-	1	Parent=Os08t0307400-02
Chr08	irgsp1_rep	CDS	12865541	12865702	.	-	0	Parent=Os08t0307400-02
Chr08	irgsp1_rep	CDS	12865207	12865413	.	-	0	Parent=Os08t0307400-02
Chr08	irgsp1_rep	CDS	12864566	12864756	.	-	0	Parent=Os08t0307400-02
Chr08	irgsp1_rep	CDS	12864088	12864235	.	-	1	Parent=Os08t0307400-02
Chr08	irgsp1_rep	CDS	12863350	12863445	.	-	0	Parent=Os08t0307400-02
Chr08	irgsp1_rep	CDS	12862859	12862994	.	-	0	Parent=Os08t0307400-02
Chr08	irgsp1_rep	CDS	12861411	12861532	.	-	2	Parent=Os08t0307400-02
Chr08	irgsp1_rep	CDS	12861120	12861305	.	-	0	Parent=Os08t0307400-02
Chr08	irgsp1_rep	CDS	12860787	12860957	.	-	0	Parent=Os08t0307400-02
Chr08	irgsp1_rep	CDS	12860561	12860698	.	-	0	Parent=Os08t0307400-02
Chr08	irgsp1_rep	CDS	12858088	12858242	.	-	0	Parent=Os08t0307400-02
Chr08	irgsp1_rep	CDS	12856578	12856730	.	-	1	Parent=Os08t0307400-02
Chr08	irgsp1_rep	CDS	12856350	12856488	.	-	1	Parent=Os08t0307400-02
Chr08	irgsp1_rep	CDS	12854983	12855120	.	-	0	Parent=Os08t0307400-02
Chr08	irgsp1_rep	three_prime_UTR	12854498	12854982	.	-	.	Parent=Os08t0307400-02
Chr08	irgsp1_rep	mRNA	12856888	12874362	.	-	.	ID=Os08t0307400-03;Name=Os08t0307400-03;Locus_id=Os08g0307400;Note=Similar to Phosphatidylinositol 3-kinase 1.;Transcript_evidence=AK111744 (DDBJ%2C Best hit);ORF_evidence=Q2VIS2 (UniProt);GO=Biological Process: phosphatidylinositol phosphorylation (GO:0046854),Biological Process: phosphatidylinositol-mediated signaling (GO:0048015),Cellular Component: phosphatidylinositol 3-kinase complex (GO:0005942),Molecular Function: inositol or phosphatidylinositol kinase activity (GO:0004428),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515),Molecular Function: 1-phosphatidylinositol-3-kinase activity (GO:0016303);InterPro=Phosphoinositide 3-kinase%2C accessory (PIK) domain (IPR001263),Phosphoinositide 3-kinase%2C C2 (IPR002420),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),Phosphatidylinositol Kinase (IPR015433),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023047P17;Expression=AK111744;TENOR=Os08t0307400-03;KEGG=Os08t0307400-03 (EC:2.7.1.137)
Chr08	irgsp1_rep	five_prime_UTR	12873294	12874362	.	-	.	Parent=Os08t0307400-03
Chr08	irgsp1_rep	five_prime_UTR	12871575	12871969	.	-	.	Parent=Os08t0307400-03
Chr08	irgsp1_rep	five_prime_UTR	12871384	12871400	.	-	.	Parent=Os08t0307400-03
Chr08	irgsp1_rep	CDS	12871236	12871383	.	-	0	Parent=Os08t0307400-03
Chr08	irgsp1_rep	CDS	12869108	12869204	.	-	2	Parent=Os08t0307400-03
Chr08	irgsp1_rep	CDS	12868891	12868987	.	-	1	Parent=Os08t0307400-03
Chr08	irgsp1_rep	CDS	12865541	12865702	.	-	0	Parent=Os08t0307400-03
Chr08	irgsp1_rep	CDS	12865207	12865413	.	-	0	Parent=Os08t0307400-03
Chr08	irgsp1_rep	CDS	12864566	12864756	.	-	0	Parent=Os08t0307400-03
Chr08	irgsp1_rep	CDS	12864088	12864235	.	-	1	Parent=Os08t0307400-03
Chr08	irgsp1_rep	CDS	12863350	12863445	.	-	0	Parent=Os08t0307400-03
Chr08	irgsp1_rep	CDS	12862859	12862994	.	-	0	Parent=Os08t0307400-03
Chr08	irgsp1_rep	CDS	12861411	12861532	.	-	2	Parent=Os08t0307400-03
Chr08	irgsp1_rep	CDS	12861260	12861301	.	-	0	Parent=Os08t0307400-03
Chr08	irgsp1_rep	three_prime_UTR	12861120	12861259	.	-	.	Parent=Os08t0307400-03
Chr08	irgsp1_rep	three_prime_UTR	12860787	12860957	.	-	.	Parent=Os08t0307400-03
Chr08	irgsp1_rep	three_prime_UTR	12860561	12860698	.	-	.	Parent=Os08t0307400-03
Chr08	irgsp1_rep	three_prime_UTR	12858088	12858242	.	-	.	Parent=Os08t0307400-03
Chr08	irgsp1_rep	three_prime_UTR	12856888	12857793	.	-	.	Parent=Os08t0307400-03
Chr08	irgsp1_rep	mRNA	12879949	12882797	.	+	.	ID=Os08t0307601-01;Name=Os08t0307601-01;Locus_id=Os08g0307601;Note=Similar to cDNA clone:002-114-B06%2C full insert sequence.;Transcript_evidence=AK241466 (DDBJ%2C Best hit);ORF_evidence=B7EZJ6 (UniProt);NIAS_FLcDNA=J065164J07;TENOR=Os08t0307601-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	12879949	12880007	.	+	.	Parent=Os08t0307601-01
Chr08	irgsp1_rep	CDS	12880008	12880367	.	+	0	Parent=Os08t0307601-01
Chr08	irgsp1_rep	three_prime_UTR	12880368	12880391	.	+	.	Parent=Os08t0307601-01
Chr08	irgsp1_rep	three_prime_UTR	12881499	12881583	.	+	.	Parent=Os08t0307601-01
Chr08	irgsp1_rep	three_prime_UTR	12882511	12882797	.	+	.	Parent=Os08t0307601-01
Chr08	irgsp1_rep	mRNA	12906966	12913661	.	-	.	ID=Os08t0308100-01;Name=Os08t0308100-01;Locus_id=Os08g0308100;Oryzabase Gene Symbol Synonym(s)=OsWD40-159%2C Cen8.t00757%2C OseIF3i%2C eIF3i%2C EIF3I;Oryzabase Gene Name Synonym(s)=EUKARYOTIC INITIATION FACTOR 3I%2C "eukaryotic translation initiation factor 3%2C subunit i";Note=Similar to TGF-beta receptor-interacting protein 1.;Transcript_evidence=AK122060 (DDBJ%2C Best hit);ORF_evidence=NP_001147501.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J033115B09;Oryzabase=10840;Expression=AK122060;TENOR=Os08t0308100-01;KEGG=Os08t0308100-01
Chr08	irgsp1_rep	five_prime_UTR	12913515	12913661	.	-	.	Parent=Os08t0308100-01
Chr08	irgsp1_rep	CDS	12913115	12913514	.	-	0	Parent=Os08t0308100-01
Chr08	irgsp1_rep	CDS	12912913	12913040	.	-	2	Parent=Os08t0308100-01
Chr08	irgsp1_rep	CDS	12912201	12912320	.	-	0	Parent=Os08t0308100-01
Chr08	irgsp1_rep	CDS	12912008	12912097	.	-	0	Parent=Os08t0308100-01
Chr08	irgsp1_rep	CDS	12908896	12908982	.	-	0	Parent=Os08t0308100-01
Chr08	irgsp1_rep	CDS	12908699	12908778	.	-	0	Parent=Os08t0308100-01
Chr08	irgsp1_rep	CDS	12907444	12907519	.	-	1	Parent=Os08t0308100-01
Chr08	irgsp1_rep	three_prime_UTR	12907420	12907443	.	-	.	Parent=Os08t0308100-01
Chr08	irgsp1_rep	three_prime_UTR	12906966	12907248	.	-	.	Parent=Os08t0308100-01
Chr08	irgsp1_rep	mRNA	12913947	12914562	.	+	.	ID=Os08t0308300-00;Name=Os08t0308300-00;Locus_id=Os08g0308300;Note=Similar to Phenylalanine ammonia-lyase.;Transcript_evidence=EU948681 (DDBJ);ORF_evidence=A2XVK3 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=L-Aspartase-like (IPR008948),Phenylalanine ammonia-lyase%2C shielding domain (IPR023144);TENOR=Os08t0308300-00;KEGG=Os08t0308300-00 (EC:4.3.1.24)
Chr08	irgsp1_rep	CDS	12913947	12914513	.	+	0	Parent=Os08t0308300-00
Chr08	irgsp1_rep	three_prime_UTR	12914514	12914562	.	+	.	Parent=Os08t0308300-00
Chr08	irgsp1_rep	mRNA	13000764	13005577	.	-	.	ID=Os08t0308700-00;Name=Os08t0308700-00;Locus_id=Os08g0308700;Oryzabase Gene Symbol Synonym(s)=Cen8.t00793;Note=Similar to DCL protein.;Transcript_evidence=CT835999 (DDBJ%2C Best hit);ORF_evidence=NP_001148429.1 (RefSeq);GO=Biological Process: amine metabolic process (GO:0009308),Molecular Function: copper ion binding (GO:0005507),Molecular Function: quinone binding (GO:0048038);InterPro=Copper amine oxidase%2C N2/N3-terminal (IPR015801),Protein of unknown function DUF3223 (IPR021602);Oryzabase=12370;TENOR=Os08t0308700-00;KEGG=Os08t0308700-00
Chr08	irgsp1_rep	five_prime_UTR	13005475	13005577	.	-	.	Parent=Os08t0308700-00
Chr08	irgsp1_rep	CDS	13005176	13005474	.	-	0	Parent=Os08t0308700-00
Chr08	irgsp1_rep	CDS	13002116	13002230	.	-	1	Parent=Os08t0308700-00
Chr08	irgsp1_rep	CDS	13000964	13001128	.	-	0	Parent=Os08t0308700-00
Chr08	irgsp1_rep	three_prime_UTR	13000764	13000963	.	-	.	Parent=Os08t0308700-00
Chr08	irgsp1_rep	mRNA	13028145	13034173	.	-	.	ID=Os08t0309300-01;Name=Os08t0309300-01;Locus_id=Os08g0309300;Oryzabase Gene Symbol Synonym(s)=Cen8.t00808;Note=RER1A protein (AtRER1A).;Transcript_evidence=AK287928 (DDBJ%2C Best hit);ORF_evidence=NP_001151498.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Retrieval of early ER protein Rer1 (IPR004932);NIAS_FLcDNA=J065218M16;Oryzabase=12372;TENOR=Os08t0309300-01;KEGG=Os08t0309300-01
Chr08	irgsp1_rep	five_prime_UTR	13034131	13034173	.	-	.	Parent=Os08t0309300-01
Chr08	irgsp1_rep	CDS	13033718	13034130	.	-	0	Parent=Os08t0309300-01
Chr08	irgsp1_rep	CDS	13028720	13028900	.	-	1	Parent=Os08t0309300-01
Chr08	irgsp1_rep	CDS	13028536	13028592	.	-	0	Parent=Os08t0309300-01
Chr08	irgsp1_rep	three_prime_UTR	13028145	13028535	.	-	.	Parent=Os08t0309300-01
Chr08	irgsp1_rep	mRNA	13064546	13067352	.	-	.	ID=Os08t0310001-01;Name=Os08t0310001-01;Locus_id=Os08g0310001;Note=Non-protein coding transcript.;Transcript_evidence=AK287640 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065078J04;TENOR=Os08t0310001-01
Chr08	irgsp1_rep	exon	13064546	13067352	.	-	.	Parent=Os08t0310001-01
Chr08	irgsp1_rep	mRNA	13072680	13076026	.	+	.	ID=Os08t0310100-01;Name=Os08t0310100-01;Locus_id=Os08g0310100;Oryzabase Gene Symbol Synonym(s)=Cen8.t00833;Note=Ribosomal protein L15 family protein.;Transcript_evidence=AK073645 (DDBJ%2C Best hit);ORF_evidence=NP_201272.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: large ribosomal subunit (GO:0015934),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L15%2C bacterial-type (IPR005749),Ribosomal protein L18e/L15P (IPR021131);NIAS_FLcDNA=J033052F06;Oryzabase=12373;Expression=AK073645;TENOR=Os08t0310100-01;KEGG=Os08t0310100-01
Chr08	irgsp1_rep	five_prime_UTR	13072680	13072709	.	+	.	Parent=Os08t0310100-01
Chr08	irgsp1_rep	CDS	13072710	13073144	.	+	0	Parent=Os08t0310100-01
Chr08	irgsp1_rep	CDS	13074438	13074521	.	+	0	Parent=Os08t0310100-01
Chr08	irgsp1_rep	CDS	13074608	13074695	.	+	0	Parent=Os08t0310100-01
Chr08	irgsp1_rep	CDS	13075461	13075741	.	+	2	Parent=Os08t0310100-01
Chr08	irgsp1_rep	three_prime_UTR	13075742	13076026	.	+	.	Parent=Os08t0310100-01
Chr08	irgsp1_rep	mRNA	13103463	13106638	.	+	.	ID=Os08t0310300-01;Name=Os08t0310300-01;Locus_id=Os08g0310300;Note=Hypothetical gene.;Transcript_evidence=AK067569 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013108B20;Expression=AK067569;TENOR=Os08t0310300-01;KEGG=Os08t0310300-01
Chr08	irgsp1_rep	five_prime_UTR	13103463	13103513	.	+	.	Parent=Os08t0310300-01
Chr08	irgsp1_rep	CDS	13103514	13103738	.	+	0	Parent=Os08t0310300-01
Chr08	irgsp1_rep	three_prime_UTR	13103739	13106638	.	+	.	Parent=Os08t0310300-01
Chr08	irgsp1_rep	mRNA	13118506	13120672	.	-	.	ID=Os08t0310500-00;Name=Os08t0310500-00;Locus_id=Os08g0310500;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6YS51 (UniProt);TENOR=Os08t0310500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	13120291	13120672	.	-	0	Parent=Os08t0310500-00
Chr08	irgsp1_rep	CDS	13118506	13118519	.	-	2	Parent=Os08t0310500-00
Chr08	irgsp1_rep	mRNA	13359083	13367573	.	+	.	ID=Os08t0313200-01;Name=Os08t0313200-01;Locus_id=Os08g0313200;Oryzabase Gene Symbol Synonym(s)=OsCBSX1%2C Cen8.t00941;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSX1%2C CBS domain containing protein OsCBSX1;Note=Similar to (clone pCDH1) carbon monoxide dehydrogenase (cdhA).;Transcript_evidence=AK121969 (DDBJ%2C Best hit);ORF_evidence=B8AP73 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Cystathionine beta-synthase%2C core (IPR000644);NIAS_FLcDNA=J033108H05;Oryzabase=10318;Expression=AK121969;TENOR=Os08t0313200-01;KEGG=Os08t0313200-01
Chr08	irgsp1_rep	five_prime_UTR	13359083	13359120	.	+	.	Parent=Os08t0313200-01
Chr08	irgsp1_rep	CDS	13359121	13359324	.	+	0	Parent=Os08t0313200-01
Chr08	irgsp1_rep	CDS	13364342	13364429	.	+	0	Parent=Os08t0313200-01
Chr08	irgsp1_rep	CDS	13364505	13364569	.	+	2	Parent=Os08t0313200-01
Chr08	irgsp1_rep	CDS	13365353	13365401	.	+	0	Parent=Os08t0313200-01
Chr08	irgsp1_rep	CDS	13365940	13365992	.	+	2	Parent=Os08t0313200-01
Chr08	irgsp1_rep	CDS	13366710	13366825	.	+	0	Parent=Os08t0313200-01
Chr08	irgsp1_rep	CDS	13366942	13366999	.	+	1	Parent=Os08t0313200-01
Chr08	irgsp1_rep	CDS	13367080	13367154	.	+	0	Parent=Os08t0313200-01
Chr08	irgsp1_rep	three_prime_UTR	13367155	13367573	.	+	.	Parent=Os08t0313200-01
Chr08	irgsp1_rep	mRNA	13392644	13398752	.	-	.	ID=Os08t0313600-00;Name=Os08t0313600-00;Locus_id=Os08g0313600;Oryzabase Gene Symbol Synonym(s)=Cen8.t00960;Note=Ubiquitin system component Cue domain containing protein.;Transcript_evidence=FP095173 (DDBJ);ORF_evidence=B9G090 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin system component Cue (IPR003892),UBA-like (IPR009060);Oryzabase=12375;TENOR=Os08t0313600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	13398573	13398752	.	-	.	Parent=Os08t0313600-00
Chr08	irgsp1_rep	CDS	13398363	13398572	.	-	0	Parent=Os08t0313600-00
Chr08	irgsp1_rep	CDS	13397332	13397482	.	-	0	Parent=Os08t0313600-00
Chr08	irgsp1_rep	CDS	13393814	13394025	.	-	2	Parent=Os08t0313600-00
Chr08	irgsp1_rep	CDS	13393429	13393599	.	-	0	Parent=Os08t0313600-00
Chr08	irgsp1_rep	CDS	13392831	13392917	.	-	0	Parent=Os08t0313600-00
Chr08	irgsp1_rep	three_prime_UTR	13392644	13392830	.	-	.	Parent=Os08t0313600-00
Chr08	irgsp1_rep	mRNA	13471744	13479149	.	+	.	ID=Os08t0314800-01;Name=Os08t0314800-01;Locus_id=Os08g0314800;Oryzabase Gene Symbol Synonym(s)=Cen8.t01003%2C OsPABPC2%2C PABPC2;Note=Similar to Poly(A)-binding protein.;Transcript_evidence=AK065167 (DDBJ%2C Best hit);ORF_evidence=P93616 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723);InterPro=RNA recognition motif domain (IPR000504),Polyadenylate-binding protein/Hyperplastic disc protein (IPR002004),RNA recognition motif domain%2C eukaryote (IPR003954),Polyadenylate binding protein%2C human types 1%2C 2%2C 3%2C 4 (IPR006515),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013002C13;Oryzabase=12376;Expression=AK065167;TENOR=Os08t0314800-01;KEGG=Os08t0314800-01
Chr08	irgsp1_rep	five_prime_UTR	13471744	13471939	.	+	.	Parent=Os08t0314800-01
Chr08	irgsp1_rep	CDS	13471940	13472216	.	+	0	Parent=Os08t0314800-01
Chr08	irgsp1_rep	CDS	13472961	13473079	.	+	2	Parent=Os08t0314800-01
Chr08	irgsp1_rep	CDS	13473162	13473821	.	+	0	Parent=Os08t0314800-01
Chr08	irgsp1_rep	CDS	13473928	13474005	.	+	0	Parent=Os08t0314800-01
Chr08	irgsp1_rep	CDS	13474091	13474180	.	+	0	Parent=Os08t0314800-01
Chr08	irgsp1_rep	CDS	13474483	13474620	.	+	0	Parent=Os08t0314800-01
Chr08	irgsp1_rep	CDS	13478127	13478297	.	+	0	Parent=Os08t0314800-01
Chr08	irgsp1_rep	CDS	13478399	13478605	.	+	0	Parent=Os08t0314800-01
Chr08	irgsp1_rep	CDS	13478700	13478942	.	+	0	Parent=Os08t0314800-01
Chr08	irgsp1_rep	three_prime_UTR	13478943	13479149	.	+	.	Parent=Os08t0314800-01
Chr08	irgsp1_rep	mRNA	13471775	13479204	.	+	.	ID=Os08t0314800-02;Name=Os08t0314800-02;Locus_id=Os08g0314800;Oryzabase Gene Symbol Synonym(s)=Cen8.t01003%2C OsPABPC2%2C PABPC2;Note=Similar to Poly(A)-binding protein.;Transcript_evidence=AK098867 (DDBJ%2C Best hit);ORF_evidence=P93616 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723);InterPro=RNA recognition motif domain (IPR000504),Polyadenylate-binding protein/Hyperplastic disc protein (IPR002004),RNA recognition motif domain%2C eukaryote (IPR003954),Polyadenylate binding protein%2C human types 1%2C 2%2C 3%2C 4 (IPR006515),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013001A12;Oryzabase=12376;Expression=AK098867;TENOR=Os08t0314800-02;KEGG=Os08t0314800-02
Chr08	irgsp1_rep	five_prime_UTR	13471775	13471939	.	+	.	Parent=Os08t0314800-02
Chr08	irgsp1_rep	CDS	13471940	13472216	.	+	0	Parent=Os08t0314800-02
Chr08	irgsp1_rep	CDS	13472961	13473079	.	+	2	Parent=Os08t0314800-02
Chr08	irgsp1_rep	CDS	13473162	13473821	.	+	0	Parent=Os08t0314800-02
Chr08	irgsp1_rep	CDS	13473928	13474005	.	+	0	Parent=Os08t0314800-02
Chr08	irgsp1_rep	CDS	13474091	13474180	.	+	0	Parent=Os08t0314800-02
Chr08	irgsp1_rep	CDS	13474483	13474620	.	+	0	Parent=Os08t0314800-02
Chr08	irgsp1_rep	CDS	13478127	13478297	.	+	0	Parent=Os08t0314800-02
Chr08	irgsp1_rep	CDS	13478399	13478605	.	+	0	Parent=Os08t0314800-02
Chr08	irgsp1_rep	CDS	13478700	13478942	.	+	0	Parent=Os08t0314800-02
Chr08	irgsp1_rep	three_prime_UTR	13478943	13479204	.	+	.	Parent=Os08t0314800-02
Chr08	irgsp1_rep	mRNA	13473541	13479149	.	+	.	ID=Os08t0314800-03;Name=Os08t0314800-03;Locus_id=Os08g0314800;Oryzabase Gene Symbol Synonym(s)=Cen8.t01003%2C OsPABPC2%2C PABPC2;Note=Hypothetical conserved gene.;Transcript_evidence=AK099783 (DDBJ%2C Best hit);ORF_evidence=C8TFM3 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723);InterPro=RNA recognition motif domain (IPR000504),Polyadenylate-binding protein/Hyperplastic disc protein (IPR002004),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013096A14;Oryzabase=12376;Expression=AK099783;TENOR=Os08t0314800-03;KEGG=Os08t0314800-03
Chr08	irgsp1_rep	five_prime_UTR	13473541	13473542	.	+	.	Parent=Os08t0314800-03
Chr08	irgsp1_rep	CDS	13473543	13473821	.	+	0	Parent=Os08t0314800-03
Chr08	irgsp1_rep	CDS	13473928	13474005	.	+	0	Parent=Os08t0314800-03
Chr08	irgsp1_rep	CDS	13474091	13474180	.	+	0	Parent=Os08t0314800-03
Chr08	irgsp1_rep	CDS	13474483	13474620	.	+	0	Parent=Os08t0314800-03
Chr08	irgsp1_rep	CDS	13478127	13478297	.	+	0	Parent=Os08t0314800-03
Chr08	irgsp1_rep	CDS	13478399	13478605	.	+	0	Parent=Os08t0314800-03
Chr08	irgsp1_rep	CDS	13478700	13478942	.	+	0	Parent=Os08t0314800-03
Chr08	irgsp1_rep	three_prime_UTR	13478943	13479149	.	+	.	Parent=Os08t0314800-03
Chr08	irgsp1_rep	mRNA	13473748	13479149	.	+	.	ID=Os08t0314800-04;Name=Os08t0314800-04;Locus_id=Os08g0314800;Oryzabase Gene Symbol Synonym(s)=Cen8.t01003%2C OsPABPC2%2C PABPC2;Note=Hypothetical conserved gene.;Transcript_evidence=AK060952 (DDBJ%2C Best hit),AK104792 (DDBJ%2C Best hit);ORF_evidence=C8TFM3 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723);InterPro=RNA recognition motif domain (IPR000504),Polyadenylate-binding protein/Hyperplastic disc protein (IPR002004),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=006-201-G03,001-039-F09;Oryzabase=12376;TENOR=Os08t0314800-04
Chr08	irgsp1_rep	five_prime_UTR	13473748	13473749	.	+	.	Parent=Os08t0314800-04
Chr08	irgsp1_rep	CDS	13473750	13473821	.	+	0	Parent=Os08t0314800-04
Chr08	irgsp1_rep	CDS	13473928	13474005	.	+	0	Parent=Os08t0314800-04
Chr08	irgsp1_rep	CDS	13474091	13474180	.	+	0	Parent=Os08t0314800-04
Chr08	irgsp1_rep	CDS	13474483	13474620	.	+	0	Parent=Os08t0314800-04
Chr08	irgsp1_rep	CDS	13478127	13478297	.	+	0	Parent=Os08t0314800-04
Chr08	irgsp1_rep	CDS	13478399	13478605	.	+	0	Parent=Os08t0314800-04
Chr08	irgsp1_rep	CDS	13478700	13478942	.	+	0	Parent=Os08t0314800-04
Chr08	irgsp1_rep	three_prime_UTR	13478943	13479149	.	+	.	Parent=Os08t0314800-04
Chr08	irgsp1_rep	mRNA	13471780	13479143	.	-	.	ID=Os08t0315001-00;Name=Os08t0315001-00;Locus_id=Os08g0315001;Note=Hypothetical protein.;Transcript_evidence=tplb0058a07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0315001-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	13478699	13479143	.	-	.	Parent=Os08t0315001-00
Chr08	irgsp1_rep	five_prime_UTR	13478395	13478604	.	-	.	Parent=Os08t0315001-00
Chr08	irgsp1_rep	five_prime_UTR	13478118	13478293	.	-	.	Parent=Os08t0315001-00
Chr08	irgsp1_rep	five_prime_UTR	13474474	13474615	.	-	.	Parent=Os08t0315001-00
Chr08	irgsp1_rep	five_prime_UTR	13474091	13474174	.	-	.	Parent=Os08t0315001-00
Chr08	irgsp1_rep	five_prime_UTR	13473931	13474005	.	-	.	Parent=Os08t0315001-00
Chr08	irgsp1_rep	five_prime_UTR	13473761	13473824	.	-	.	Parent=Os08t0315001-00
Chr08	irgsp1_rep	CDS	13473281	13473760	.	-	0	Parent=Os08t0315001-00
Chr08	irgsp1_rep	three_prime_UTR	13473160	13473280	.	-	.	Parent=Os08t0315001-00
Chr08	irgsp1_rep	three_prime_UTR	13472944	13473077	.	-	.	Parent=Os08t0315001-00
Chr08	irgsp1_rep	three_prime_UTR	13471780	13472196	.	-	.	Parent=Os08t0315001-00
Chr08	irgsp1_rep	mRNA	13488426	13495822	.	+	.	ID=Os08t0315200-01;Name=Os08t0315200-01;Locus_id=Os08g0315200;Note=Retrotransposon gag protein family protein.;Transcript_evidence=AK106325 (DDBJ%2C Best hit);ORF_evidence=GeneMark;InterPro=Retrotransposon gag protein (IPR005162);NIAS_FLcDNA=002-101-F01;Expression=AK106325;TENOR=Os08t0315200-01;KEGG=Os08t0315200-01
Chr08	irgsp1_rep	five_prime_UTR	13488426	13489578	.	+	.	Parent=Os08t0315200-01
Chr08	irgsp1_rep	five_prime_UTR	13491530	13491618	.	+	.	Parent=Os08t0315200-01
Chr08	irgsp1_rep	five_prime_UTR	13494596	13494598	.	+	.	Parent=Os08t0315200-01
Chr08	irgsp1_rep	CDS	13494599	13495486	.	+	0	Parent=Os08t0315200-01
Chr08	irgsp1_rep	three_prime_UTR	13495487	13495822	.	+	.	Parent=Os08t0315200-01
Chr08	irgsp1_rep	mRNA	13603168	13604199	.	-	.	ID=Os08t0316900-01;Name=Os08t0316900-01;Locus_id=Os08g0316900;Note=Hypothetical protein.;Transcript_evidence=AK110651 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=002-169-E02;TENOR=Os08t0316900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	13604109	13604199	.	-	.	Parent=Os08t0316900-01
Chr08	irgsp1_rep	five_prime_UTR	13604020	13604022	.	-	.	Parent=Os08t0316900-01
Chr08	irgsp1_rep	CDS	13603795	13604019	.	-	0	Parent=Os08t0316900-01
Chr08	irgsp1_rep	three_prime_UTR	13603767	13603794	.	-	.	Parent=Os08t0316900-01
Chr08	irgsp1_rep	three_prime_UTR	13603168	13603677	.	-	.	Parent=Os08t0316900-01
Chr08	irgsp1_rep	mRNA	13738905	13740126	.	+	.	ID=Os08t0318400-01;Name=Os08t0318400-01;Locus_id=Os08g0318400;Oryzabase Gene Symbol Synonym(s)=Cen8.t01152;Note=Conserved hypothetical protein.;Transcript_evidence=AK103062 (DDBJ%2C Best hit),AK063848 (DDBJ%2C Best hit);ORF_evidence=C8TFB9 (UniProt);NIAS_FLcDNA=J033117M05,001-122-C08;Oryzabase=12378;Expression=AK103062;TENOR=Os08t0318400-01;KEGG=Os08t0318400-01
Chr08	irgsp1_rep	five_prime_UTR	13738905	13739186	.	+	.	Parent=Os08t0318400-01
Chr08	irgsp1_rep	CDS	13739187	13739753	.	+	0	Parent=Os08t0318400-01
Chr08	irgsp1_rep	three_prime_UTR	13739754	13740126	.	+	.	Parent=Os08t0318400-01
Chr08	irgsp1_rep	mRNA	13740485	13765521	.	-	.	ID=Os08t0318500-01;Name=Os08t0318500-01;Locus_id=Os08g0318500;Oryzabase Gene Symbol Synonym(s)=Cen8.t01153;Note=Sec8 exocyst complex component specific domain containing protein.;Transcript_evidence=AK070862 (DDBJ%2C Best hit);ORF_evidence=C8TFC0 (UniProt);GO=Biological Process: vesicle docking involved in exocytosis (GO:0006904),Biological Process: protein transport (GO:0015031),Cellular Component: exocyst (GO:0000145);InterPro=Sec8 exocyst complex component specific domain (IPR007191);NIAS_FLcDNA=J023073E23;Oryzabase=12379;Expression=AK070862;TENOR=Os08t0318500-01;KEGG=Os08t0318500-01
Chr08	irgsp1_rep	five_prime_UTR	13765438	13765521	.	-	.	Parent=Os08t0318500-01
Chr08	irgsp1_rep	CDS	13765375	13765437	.	-	0	Parent=Os08t0318500-01
Chr08	irgsp1_rep	CDS	13765085	13765297	.	-	0	Parent=Os08t0318500-01
Chr08	irgsp1_rep	CDS	13764788	13764961	.	-	0	Parent=Os08t0318500-01
Chr08	irgsp1_rep	CDS	13763072	13763176	.	-	0	Parent=Os08t0318500-01
Chr08	irgsp1_rep	CDS	13762609	13762718	.	-	0	Parent=Os08t0318500-01
Chr08	irgsp1_rep	CDS	13761105	13761272	.	-	1	Parent=Os08t0318500-01
Chr08	irgsp1_rep	CDS	13760535	13760673	.	-	1	Parent=Os08t0318500-01
Chr08	irgsp1_rep	CDS	13760333	13760439	.	-	0	Parent=Os08t0318500-01
Chr08	irgsp1_rep	CDS	13759595	13759893	.	-	1	Parent=Os08t0318500-01
Chr08	irgsp1_rep	CDS	13759337	13759503	.	-	2	Parent=Os08t0318500-01
Chr08	irgsp1_rep	CDS	13758342	13758458	.	-	0	Parent=Os08t0318500-01
Chr08	irgsp1_rep	CDS	13756071	13756137	.	-	0	Parent=Os08t0318500-01
Chr08	irgsp1_rep	CDS	13753712	13753824	.	-	2	Parent=Os08t0318500-01
Chr08	irgsp1_rep	CDS	13753574	13753623	.	-	0	Parent=Os08t0318500-01
Chr08	irgsp1_rep	CDS	13751887	13751987	.	-	1	Parent=Os08t0318500-01
Chr08	irgsp1_rep	CDS	13747498	13747610	.	-	2	Parent=Os08t0318500-01
Chr08	irgsp1_rep	CDS	13747310	13747417	.	-	0	Parent=Os08t0318500-01
Chr08	irgsp1_rep	CDS	13745045	13745236	.	-	0	Parent=Os08t0318500-01
Chr08	irgsp1_rep	CDS	13743687	13743772	.	-	0	Parent=Os08t0318500-01
Chr08	irgsp1_rep	CDS	13742946	13743141	.	-	1	Parent=Os08t0318500-01
Chr08	irgsp1_rep	CDS	13742784	13742861	.	-	0	Parent=Os08t0318500-01
Chr08	irgsp1_rep	CDS	13742268	13742369	.	-	0	Parent=Os08t0318500-01
Chr08	irgsp1_rep	CDS	13741324	13741398	.	-	0	Parent=Os08t0318500-01
Chr08	irgsp1_rep	CDS	13741065	13741160	.	-	0	Parent=Os08t0318500-01
Chr08	irgsp1_rep	CDS	13740942	13740991	.	-	0	Parent=Os08t0318500-01
Chr08	irgsp1_rep	CDS	13740769	13740856	.	-	1	Parent=Os08t0318500-01
Chr08	irgsp1_rep	three_prime_UTR	13740485	13740768	.	-	.	Parent=Os08t0318500-01
Chr08	irgsp1_rep	mRNA	13912935	13919786	.	-	.	ID=Os08t0319900-01;Name=Os08t0319900-01;Locus_id=Os08g0319900;Oryzabase Gene Symbol Synonym(s)=OsCYL3%2C CYL3;Oryzabase Gene Name Synonym(s)=cyclase-like 3;Note=Putative cyclase family protein.;Transcript_evidence=AK108030 (DDBJ%2C Best hit);ORF_evidence=C8TFG5 (UniProt);InterPro=Putative cyclase (IPR007325);NIAS_FLcDNA=002-137-B04;Oryzabase=19887;Expression=AK108030;TENOR=Os08t0319900-01;KEGG=Os08t0319900-01
Chr08	irgsp1_rep	five_prime_UTR	13919688	13919786	.	-	.	Parent=Os08t0319900-01
Chr08	irgsp1_rep	CDS	13919288	13919687	.	-	0	Parent=Os08t0319900-01
Chr08	irgsp1_rep	CDS	13918286	13918330	.	-	2	Parent=Os08t0319900-01
Chr08	irgsp1_rep	CDS	13918089	13918161	.	-	2	Parent=Os08t0319900-01
Chr08	irgsp1_rep	CDS	13917399	13917496	.	-	1	Parent=Os08t0319900-01
Chr08	irgsp1_rep	CDS	13914356	13914426	.	-	2	Parent=Os08t0319900-01
Chr08	irgsp1_rep	CDS	13913425	13913550	.	-	0	Parent=Os08t0319900-01
Chr08	irgsp1_rep	three_prime_UTR	13913360	13913424	.	-	.	Parent=Os08t0319900-01
Chr08	irgsp1_rep	three_prime_UTR	13912935	13913266	.	-	.	Parent=Os08t0319900-01
Chr08	irgsp1_rep	mRNA	13919939	13925444	.	+	.	ID=Os08t0320000-01;Name=Os08t0320000-01;Locus_id=Os08g0320000;Note=Similar to tyrosyl-tRNA synthetase.;Transcript_evidence=AK101379 (DDBJ%2C Best hit);ORF_evidence=NP_001148699.1 (RefSeq);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: ATP binding (GO:0005524);InterPro=Aminoacyl-tRNA synthetase%2C class Ic (IPR002305),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J033036D04;TENOR=Os08t0320000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	13919939	13920010	.	+	.	Parent=Os08t0320000-01
Chr08	irgsp1_rep	CDS	13920011	13920250	.	+	0	Parent=Os08t0320000-01
Chr08	irgsp1_rep	CDS	13921965	13922252	.	+	0	Parent=Os08t0320000-01
Chr08	irgsp1_rep	three_prime_UTR	13922253	13922456	.	+	.	Parent=Os08t0320000-01
Chr08	irgsp1_rep	three_prime_UTR	13922600	13924052	.	+	.	Parent=Os08t0320000-01
Chr08	irgsp1_rep	three_prime_UTR	13924244	13924349	.	+	.	Parent=Os08t0320000-01
Chr08	irgsp1_rep	three_prime_UTR	13924600	13924659	.	+	.	Parent=Os08t0320000-01
Chr08	irgsp1_rep	three_prime_UTR	13925098	13925444	.	+	.	Parent=Os08t0320000-01
Chr08	irgsp1_rep	mRNA	13930614	13934382	.	-	.	ID=Os08t0320051-00;Name=Os08t0320051-00;Locus_id=Os08g0320051;Note=Hypothetical gene.;Transcript_evidence=BT017230 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0320051-00;KEGG=Os08t0320051-00
Chr08	irgsp1_rep	five_prime_UTR	13933710	13934382	.	-	.	Parent=Os08t0320051-00
Chr08	irgsp1_rep	five_prime_UTR	13933379	13933471	.	-	.	Parent=Os08t0320051-00
Chr08	irgsp1_rep	CDS	13933291	13933378	.	-	0	Parent=Os08t0320051-00
Chr08	irgsp1_rep	CDS	13933117	13933205	.	-	2	Parent=Os08t0320051-00
Chr08	irgsp1_rep	CDS	13932740	13932919	.	-	0	Parent=Os08t0320051-00
Chr08	irgsp1_rep	three_prime_UTR	13932733	13932739	.	-	.	Parent=Os08t0320051-00
Chr08	irgsp1_rep	three_prime_UTR	13930614	13930732	.	-	.	Parent=Os08t0320051-00
Chr08	irgsp1_rep	mRNA	13930625	13934574	.	+	.	ID=Os08t0320100-01;Name=Os08t0320100-01;Locus_id=Os08g0320100;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK121802 (DDBJ%2C Best hit);ORF_evidence=B4FMA8 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033097J11;Expression=AK121802;TENOR=Os08t0320100-01;KEGG=Os08t0320100-01
Chr08	irgsp1_rep	five_prime_UTR	13930625	13930681	.	+	.	Parent=Os08t0320100-01
Chr08	irgsp1_rep	CDS	13930682	13930725	.	+	0	Parent=Os08t0320100-01
Chr08	irgsp1_rep	CDS	13930863	13930903	.	+	1	Parent=Os08t0320100-01
Chr08	irgsp1_rep	CDS	13932760	13932923	.	+	2	Parent=Os08t0320100-01
Chr08	irgsp1_rep	CDS	13933121	13933220	.	+	0	Parent=Os08t0320100-01
Chr08	irgsp1_rep	CDS	13933314	13933486	.	+	2	Parent=Os08t0320100-01
Chr08	irgsp1_rep	CDS	13933728	13934258	.	+	0	Parent=Os08t0320100-01
Chr08	irgsp1_rep	three_prime_UTR	13934259	13934574	.	+	.	Parent=Os08t0320100-01
Chr08	irgsp1_rep	mRNA	13933169	13934681	.	+	.	ID=Os08t0320100-02;Name=Os08t0320100-02;Locus_id=Os08g0320100;Note=Hypothetical conserved gene.;Transcript_evidence=AK104999 (DDBJ%2C Best hit);ORF_evidence=B8B9P9 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-003-E11;Expression=AK104999;TENOR=Os08t0320100-02;KEGG=Os08t0320100-02
Chr08	irgsp1_rep	CDS	13933169	13933220	.	+	0	Parent=Os08t0320100-02
Chr08	irgsp1_rep	CDS	13933314	13933486	.	+	2	Parent=Os08t0320100-02
Chr08	irgsp1_rep	CDS	13933728	13934258	.	+	0	Parent=Os08t0320100-02
Chr08	irgsp1_rep	three_prime_UTR	13934259	13934681	.	+	.	Parent=Os08t0320100-02
Chr08	irgsp1_rep	mRNA	13937594	13942114	.	-	.	ID=Os08t0320200-01;Name=Os08t0320200-01;Locus_id=Os08g0320200;Oryzabase Gene Symbol Synonym(s)=OsOPT5;Oryzabase Gene Name Synonym(s)=Oligopeptide transporter 5;Note=Similar to oligopeptide transporter OPT family.;Transcript_evidence=AK072608 (DDBJ%2C Best hit);ORF_evidence=XP_002329927.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085);InterPro=Oligopeptide transporter OPT superfamily (IPR004813);NIAS_FLcDNA=J023134K04;Oryzabase=12498;TENOR=Os08t0320200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	13941984	13942114	.	-	.	Parent=Os08t0320200-01
Chr08	irgsp1_rep	five_prime_UTR	13941514	13941690	.	-	.	Parent=Os08t0320200-01
Chr08	irgsp1_rep	five_prime_UTR	13940361	13940368	.	-	.	Parent=Os08t0320200-01
Chr08	irgsp1_rep	CDS	13939920	13940360	.	-	0	Parent=Os08t0320200-01
Chr08	irgsp1_rep	CDS	13939724	13939821	.	-	0	Parent=Os08t0320200-01
Chr08	irgsp1_rep	CDS	13938997	13939566	.	-	1	Parent=Os08t0320200-01
Chr08	irgsp1_rep	CDS	13938781	13938868	.	-	1	Parent=Os08t0320200-01
Chr08	irgsp1_rep	three_prime_UTR	13938590	13938780	.	-	.	Parent=Os08t0320200-01
Chr08	irgsp1_rep	three_prime_UTR	13937594	13938487	.	-	.	Parent=Os08t0320200-01
Chr08	irgsp1_rep	mRNA	13937593	13942065	.	-	.	ID=Os08t0320200-02;Name=Os08t0320200-02;Locus_id=Os08g0320200;Oryzabase Gene Symbol Synonym(s)=OsOPT5;Oryzabase Gene Name Synonym(s)=Oligopeptide transporter 5;Note=Oligopeptide transporter OPT superfamily domain containing protein.;Transcript_evidence=AK121257 (DDBJ%2C Best hit);ORF_evidence=XP_002329927.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085);InterPro=Tetrapeptide transporter%2C OPT1/isp4 (IPR004648),Oligopeptide transporter OPT superfamily (IPR004813);NIAS_FLcDNA=J023102I03;Oryzabase=12498;Expression=AK121257;TENOR=Os08t0320200-02;KEGG=Os08t0320200-02
Chr08	irgsp1_rep	five_prime_UTR	13941514	13942065	.	-	.	Parent=Os08t0320200-02
Chr08	irgsp1_rep	five_prime_UTR	13940361	13940399	.	-	.	Parent=Os08t0320200-02
Chr08	irgsp1_rep	CDS	13939920	13940360	.	-	0	Parent=Os08t0320200-02
Chr08	irgsp1_rep	CDS	13939724	13939821	.	-	0	Parent=Os08t0320200-02
Chr08	irgsp1_rep	CDS	13938993	13939566	.	-	1	Parent=Os08t0320200-02
Chr08	irgsp1_rep	CDS	13938590	13938868	.	-	0	Parent=Os08t0320200-02
Chr08	irgsp1_rep	CDS	13937678	13938487	.	-	0	Parent=Os08t0320200-02
Chr08	irgsp1_rep	three_prime_UTR	13937593	13937677	.	-	.	Parent=Os08t0320200-02
Chr08	irgsp1_rep	mRNA	13943831	13950647	.	+	.	ID=Os08t0320300-01;Name=Os08t0320300-01;Locus_id=Os08g0320300;Note=Conserved hypothetical protein.;Transcript_evidence=AK069354 (DDBJ%2C Best hit);ORF_evidence=B8B9Q1 (UniProt);NIAS_FLcDNA=J023018H14;Expression=AK069354;TENOR=Os08t0320300-01;KEGG=Os08t0320300-01
Chr08	irgsp1_rep	five_prime_UTR	13943831	13944000	.	+	.	Parent=Os08t0320300-01
Chr08	irgsp1_rep	CDS	13944001	13944049	.	+	0	Parent=Os08t0320300-01
Chr08	irgsp1_rep	CDS	13944127	13944213	.	+	2	Parent=Os08t0320300-01
Chr08	irgsp1_rep	CDS	13944311	13944444	.	+	2	Parent=Os08t0320300-01
Chr08	irgsp1_rep	CDS	13946525	13946583	.	+	0	Parent=Os08t0320300-01
Chr08	irgsp1_rep	CDS	13946651	13946705	.	+	1	Parent=Os08t0320300-01
Chr08	irgsp1_rep	CDS	13946819	13946845	.	+	0	Parent=Os08t0320300-01
Chr08	irgsp1_rep	CDS	13948457	13948516	.	+	0	Parent=Os08t0320300-01
Chr08	irgsp1_rep	three_prime_UTR	13948517	13949511	.	+	.	Parent=Os08t0320300-01
Chr08	irgsp1_rep	three_prime_UTR	13949692	13949735	.	+	.	Parent=Os08t0320300-01
Chr08	irgsp1_rep	three_prime_UTR	13949798	13950060	.	+	.	Parent=Os08t0320300-01
Chr08	irgsp1_rep	three_prime_UTR	13950143	13950262	.	+	.	Parent=Os08t0320300-01
Chr08	irgsp1_rep	three_prime_UTR	13950374	13950647	.	+	.	Parent=Os08t0320300-01
Chr08	irgsp1_rep	mRNA	13954452	13957282	.	+	.	ID=Os08t0320400-01;Name=Os08t0320400-01;Locus_id=Os08g0320400;Oryzabase Gene Name Synonym(s)=indole-3-glycerol phosphate synthase family protein;Note=Similar to Indole-3-glycerol phosphate synthase-like.;Transcript_evidence=AK243589 (DDBJ%2C Best hit);ORF_evidence=C8TFG9 (UniProt);GO=Biological Process: tryptophan metabolic process (GO:0006568),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: indole-3-glycerol-phosphate synthase activity (GO:0004425);InterPro=Indole-3-glycerol phosphate synthase%2C conserved site (IPR001468),Ribulose-phosphate binding barrel (IPR011060),Aldolase-type TIM barrel (IPR013785),Indole-3-glycerol phosphate synthase (IPR013798);NIAS_FLcDNA=J100083E04;Oryzabase=22118;TENOR=Os08t0320400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	13954452	13954546	.	+	.	Parent=Os08t0320400-01
Chr08	irgsp1_rep	CDS	13954547	13954702	.	+	0	Parent=Os08t0320400-01
Chr08	irgsp1_rep	CDS	13954948	13955172	.	+	0	Parent=Os08t0320400-01
Chr08	irgsp1_rep	CDS	13955531	13955707	.	+	0	Parent=Os08t0320400-01
Chr08	irgsp1_rep	CDS	13955788	13955925	.	+	0	Parent=Os08t0320400-01
Chr08	irgsp1_rep	three_prime_UTR	13955926	13955995	.	+	.	Parent=Os08t0320400-01
Chr08	irgsp1_rep	three_prime_UTR	13956090	13956254	.	+	.	Parent=Os08t0320400-01
Chr08	irgsp1_rep	three_prime_UTR	13956566	13956644	.	+	.	Parent=Os08t0320400-01
Chr08	irgsp1_rep	three_prime_UTR	13956794	13957282	.	+	.	Parent=Os08t0320400-01
Chr08	irgsp1_rep	mRNA	13959154	13960150	.	+	.	ID=Os08t0320500-01;Name=Os08t0320500-01;Locus_id=Os08g0320500;Note=Hypothetical conserved gene.;Transcript_evidence=AK111256 (DDBJ%2C Best hit);ORF_evidence=A2Z2P5 (UniProt);NIAS_FLcDNA=002-180-E08;Expression=AK111256;TENOR=Os08t0320500-01;KEGG=Os08t0320500-01
Chr08	irgsp1_rep	five_prime_UTR	13959154	13959403	.	+	.	Parent=Os08t0320500-01
Chr08	irgsp1_rep	CDS	13959404	13960012	.	+	0	Parent=Os08t0320500-01
Chr08	irgsp1_rep	three_prime_UTR	13960013	13960150	.	+	.	Parent=Os08t0320500-01
Chr08	irgsp1_rep	mRNA	13967809	13972066	.	+	.	ID=Os08t0320800-00;Name=Os08t0320800-00;Locus_id=Os08g0320800;Note=Similar to Endoribonuclease E-like protein.;Transcript_evidence=ab initio prediction;ORF_evidence=C8TFH0 (UniProt);TENOR=Os08t0320800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	13967809	13967842	.	+	0	Parent=Os08t0320800-00
Chr08	irgsp1_rep	CDS	13968616	13968890	.	+	2	Parent=Os08t0320800-00
Chr08	irgsp1_rep	CDS	13971875	13972066	.	+	0	Parent=Os08t0320800-00
Chr08	irgsp1_rep	mRNA	13973143	13973797	.	+	.	ID=Os08t0320900-01;Name=Os08t0320900-01;Locus_id=Os08g0320900;Oryzabase Gene Symbol Synonym(s)=OsEnS-120;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 120;Note=Hypothetical protein.;Transcript_evidence=AK107815 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=002-133-F07;Oryzabase=18415;TENOR=Os08t0320900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	13973143	13973144	.	+	.	Parent=Os08t0320900-01
Chr08	irgsp1_rep	CDS	13973145	13973666	.	+	0	Parent=Os08t0320900-01
Chr08	irgsp1_rep	three_prime_UTR	13973667	13973797	.	+	.	Parent=Os08t0320900-01
Chr08	irgsp1_rep	mRNA	13985126	13988121	.	-	.	ID=Os08t0321000-01;Name=Os08t0321000-01;Locus_id=Os08g0321000;CGSNL Gene Symbol=FLA3;CGSNL Gene Name=FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsFLA3;Oryzabase Gene Name Synonym(s)=fasciclin-like AGP 3%2C fasciclin-like arabinogalactan protein 3;Note=FAS1 domain domain containing protein.;Transcript_evidence=AK068096 (DDBJ%2C Best hit);ORF_evidence=A2YTW2 (UniProt);InterPro=FAS1 domain (IPR000782);NIAS_FLcDNA=J013134F13;Oryzabase=11338;Expression=AK068096;TENOR=Os08t0321000-01;KEGG=Os08t0321000-01
Chr08	irgsp1_rep	five_prime_UTR	13987922	13988121	.	-	.	Parent=Os08t0321000-01
Chr08	irgsp1_rep	CDS	13987574	13987921	.	-	0	Parent=Os08t0321000-01
Chr08	irgsp1_rep	CDS	13985436	13986335	.	-	0	Parent=Os08t0321000-01
Chr08	irgsp1_rep	three_prime_UTR	13985126	13985435	.	-	.	Parent=Os08t0321000-01
Chr08	irgsp1_rep	mRNA	13985121	13988084	.	-	.	ID=Os08t0321000-02;Name=Os08t0321000-02;Locus_id=Os08g0321000;CGSNL Gene Symbol=FLA3;CGSNL Gene Name=FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsFLA3;Oryzabase Gene Name Synonym(s)=fasciclin-like AGP 3%2C fasciclin-like arabinogalactan protein 3;Note=FAS1 domain domain containing protein.;Transcript_evidence=AK119590 (DDBJ%2C Best hit),AK104404 (DDBJ%2C Best hit),AK119591 (DDBJ%2C Best hit);ORF_evidence=A2YTW2 (UniProt);InterPro=FAS1 domain (IPR000782);NIAS_FLcDNA=002-117-D03,006-203-C07,002-117-D04;Oryzabase=11338;TENOR=Os08t0321000-02;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	13987922	13988084	.	-	.	Parent=Os08t0321000-02
Chr08	irgsp1_rep	CDS	13987574	13987921	.	-	0	Parent=Os08t0321000-02
Chr08	irgsp1_rep	CDS	13985436	13986335	.	-	0	Parent=Os08t0321000-02
Chr08	irgsp1_rep	three_prime_UTR	13985121	13985435	.	-	.	Parent=Os08t0321000-02
Chr08	irgsp1_rep	mRNA	14056207	14058411	.	+	.	ID=Os08t0322500-00;Name=Os08t0322500-00;Locus_id=Os08g0322500;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q94H87 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);TENOR=Os08t0322500-00;KEGG=Os08t0322500-00
Chr08	irgsp1_rep	CDS	14056207	14058411	.	+	0	Parent=Os08t0322500-00
Chr08	irgsp1_rep	mRNA	14056223	14056988	.	-	.	ID=Os08t0322550-00;Name=Os08t0322550-00;Locus_id=Os08g0322550;Note=Hypothetical protein.;Transcript_evidence=AK369221 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0322550-00
Chr08	irgsp1_rep	five_prime_UTR	14056932	14056988	.	-	.	Parent=Os08t0322550-00
Chr08	irgsp1_rep	CDS	14056605	14056931	.	-	0	Parent=Os08t0322550-00
Chr08	irgsp1_rep	three_prime_UTR	14056223	14056604	.	-	.	Parent=Os08t0322550-00
Chr08	irgsp1_rep	mRNA	14078934	14082465	.	-	.	ID=Os08t0322600-01;Name=Os08t0322600-01;Locus_id=Os08g0322600;Oryzabase Gene Symbol Synonym(s)=OsPPT1a;Oryzabase Gene Name Synonym(s)=p-hydroxybenzoate polyprenyltransferase 1a;Note=Similar to PGT-2.;Transcript_evidence=AK069839 (DDBJ%2C Best hit);ORF_evidence=NP_001148558.1 (RefSeq);GO=Biological Process: biosynthetic process (GO:0009058),Cellular Component: integral to membrane (GO:0016021),Molecular Function: prenyltransferase activity (GO:0004659);InterPro=UbiA prenyltransferase family (IPR000537),4-hydroxybenzoate polyprenyl transferase (IPR006370);NIAS_FLcDNA=J023031A12;Oryzabase=11207;TENOR=Os08t0322600-01
Chr08	irgsp1_rep	five_prime_UTR	14082210	14082465	.	-	.	Parent=Os08t0322600-01
Chr08	irgsp1_rep	CDS	14081734	14082209	.	-	0	Parent=Os08t0322600-01
Chr08	irgsp1_rep	CDS	14081502	14081637	.	-	1	Parent=Os08t0322600-01
Chr08	irgsp1_rep	CDS	14081142	14081263	.	-	0	Parent=Os08t0322600-01
Chr08	irgsp1_rep	CDS	14080813	14080882	.	-	1	Parent=Os08t0322600-01
Chr08	irgsp1_rep	CDS	14080574	14080723	.	-	0	Parent=Os08t0322600-01
Chr08	irgsp1_rep	CDS	14080353	14080488	.	-	0	Parent=Os08t0322600-01
Chr08	irgsp1_rep	CDS	14080169	14080265	.	-	2	Parent=Os08t0322600-01
Chr08	irgsp1_rep	CDS	14080009	14080078	.	-	1	Parent=Os08t0322600-01
Chr08	irgsp1_rep	three_prime_UTR	14079703	14080008	.	-	.	Parent=Os08t0322600-01
Chr08	irgsp1_rep	three_prime_UTR	14078934	14079383	.	-	.	Parent=Os08t0322600-01
Chr08	irgsp1_rep	mRNA	14078939	14082224	.	-	.	ID=Os08t0322600-02;Name=Os08t0322600-02;Locus_id=Os08g0322600;Oryzabase Gene Symbol Synonym(s)=OsPPT1a;Oryzabase Gene Name Synonym(s)=p-hydroxybenzoate polyprenyltransferase 1a;Note=Similar to PGT-2.;Transcript_evidence=AK119582 (DDBJ%2C Best hit);ORF_evidence=NP_001148558.1 (RefSeq);GO=Biological Process: biosynthetic process (GO:0009058),Cellular Component: integral to membrane (GO:0016021),Molecular Function: prenyltransferase activity (GO:0004659);InterPro=UbiA prenyltransferase family (IPR000537),4-hydroxybenzoate polyprenyl transferase (IPR006370);NIAS_FLcDNA=002-117-C04;Oryzabase=11207;TENOR=Os08t0322600-02
Chr08	irgsp1_rep	five_prime_UTR	14082210	14082224	.	-	.	Parent=Os08t0322600-02
Chr08	irgsp1_rep	CDS	14081734	14082209	.	-	0	Parent=Os08t0322600-02
Chr08	irgsp1_rep	CDS	14081502	14081637	.	-	1	Parent=Os08t0322600-02
Chr08	irgsp1_rep	CDS	14081142	14081263	.	-	0	Parent=Os08t0322600-02
Chr08	irgsp1_rep	CDS	14080813	14080882	.	-	1	Parent=Os08t0322600-02
Chr08	irgsp1_rep	CDS	14080574	14080723	.	-	0	Parent=Os08t0322600-02
Chr08	irgsp1_rep	CDS	14080353	14080488	.	-	0	Parent=Os08t0322600-02
Chr08	irgsp1_rep	CDS	14080169	14080265	.	-	2	Parent=Os08t0322600-02
Chr08	irgsp1_rep	CDS	14080009	14080078	.	-	1	Parent=Os08t0322600-02
Chr08	irgsp1_rep	three_prime_UTR	14079703	14080008	.	-	.	Parent=Os08t0322600-02
Chr08	irgsp1_rep	three_prime_UTR	14078939	14079383	.	-	.	Parent=Os08t0322600-02
Chr08	irgsp1_rep	mRNA	14105821	14113578	.	-	.	ID=Os08t0323000-01;Name=Os08t0323000-01;Locus_id=Os08g0323000;Note=Similar to Signal recognition particle 68 kDa protein.;Transcript_evidence=AK064573 (DDBJ%2C Best hit);ORF_evidence=B6U4F2 (UniProt);NIAS_FLcDNA=002-112-E01;TENOR=Os08t0323000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	14113578	14113578	.	-	.	Parent=Os08t0323000-01
Chr08	irgsp1_rep	CDS	14113516	14113577	.	-	0	Parent=Os08t0323000-01
Chr08	irgsp1_rep	CDS	14113159	14113351	.	-	1	Parent=Os08t0323000-01
Chr08	irgsp1_rep	CDS	14111023	14111134	.	-	0	Parent=Os08t0323000-01
Chr08	irgsp1_rep	CDS	14110683	14110810	.	-	2	Parent=Os08t0323000-01
Chr08	irgsp1_rep	CDS	14110384	14110590	.	-	0	Parent=Os08t0323000-01
Chr08	irgsp1_rep	CDS	14110201	14110310	.	-	0	Parent=Os08t0323000-01
Chr08	irgsp1_rep	CDS	14109545	14109668	.	-	1	Parent=Os08t0323000-01
Chr08	irgsp1_rep	CDS	14107451	14107594	.	-	0	Parent=Os08t0323000-01
Chr08	irgsp1_rep	CDS	14106107	14106322	.	-	0	Parent=Os08t0323000-01
Chr08	irgsp1_rep	three_prime_UTR	14105821	14106106	.	-	.	Parent=Os08t0323000-01
Chr08	irgsp1_rep	mRNA	14117415	14117751	.	-	.	ID=Os08t0323266-00;Name=Os08t0323266-00;Locus_id=Os08g0323266;Note=Similar to Signal recognition particle 68 kDa protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B6U4F2 (UniProt);TENOR=Os08t0323266-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	14117661	14117751	.	-	0	Parent=Os08t0323266-00
Chr08	irgsp1_rep	CDS	14117415	14117560	.	-	2	Parent=Os08t0323266-00
Chr08	irgsp1_rep	mRNA	14157905	14158861	.	-	.	ID=Os08t0323400-01;Name=Os08t0323400-01;Locus_id=Os08g0323400;CGSNL Gene Symbol=ISC42;CGSNL Gene Name=IRON-SULFUR CLUSTER PROTEIN 42;Oryzabase Gene Symbol Synonym(s)=OsISC42;Oryzabase Gene Name Synonym(s)=Iron-sulfur cluster protein 42;Note=Similar to Rubredoxin (Rd).;Transcript_evidence=AK068722 (DDBJ%2C Best hit),AK104226 (DDBJ%2C Best hit);ORF_evidence=E5GBR8 (UniProt);GO=Molecular Function: electron carrier activity (GO:0009055),Molecular Function: metal ion binding (GO:0046872);InterPro=Rubredoxin-type Fe(Cys)4 protein (IPR004039),Rubredoxin%2C iron-binding site (IPR018527);NIAS_FLcDNA=J013165B12,006-306-H08;Oryzabase=13444;Expression=AK068722;TENOR=Os08t0323400-01;KEGG=Os08t0323400-01
Chr08	irgsp1_rep	five_prime_UTR	14158683	14158861	.	-	.	Parent=Os08t0323400-01
Chr08	irgsp1_rep	CDS	14158029	14158682	.	-	0	Parent=Os08t0323400-01
Chr08	irgsp1_rep	three_prime_UTR	14157905	14158028	.	-	.	Parent=Os08t0323400-01
Chr08	irgsp1_rep	mRNA	14171510	14178889	.	-	.	ID=Os08t0323600-01;Name=Os08t0323600-01;Locus_id=Os08g0323600;Note=Hypothetical conserved gene.;Transcript_evidence=AK121043 (DDBJ%2C Best hit);ORF_evidence=Q69PQ8 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Glycoside hydrolase%2C carbohydrate-binding (IPR002044),Nucleic acid-binding%2C OB-fold (IPR012340),Immunoglobulin-like fold (IPR013783),Carbohydrate-binding-like fold (IPR013784),Nucleic acid-binding%2C OB-fold-like (IPR016027),RNA-binding protein AU-1/Ribonuclease E/G (IPR019307);NIAS_FLcDNA=J023052N16;Expression=AK121043;TENOR=Os08t0323600-01;KEGG=Os08t0323600-01
Chr08	irgsp1_rep	five_prime_UTR	14178729	14178889	.	-	.	Parent=Os08t0323600-01
Chr08	irgsp1_rep	CDS	14178562	14178728	.	-	0	Parent=Os08t0323600-01
Chr08	irgsp1_rep	CDS	14178037	14178143	.	-	1	Parent=Os08t0323600-01
Chr08	irgsp1_rep	CDS	14176523	14176707	.	-	2	Parent=Os08t0323600-01
Chr08	irgsp1_rep	CDS	14175188	14175497	.	-	0	Parent=Os08t0323600-01
Chr08	irgsp1_rep	CDS	14173875	14175094	.	-	2	Parent=Os08t0323600-01
Chr08	irgsp1_rep	CDS	14172999	14173316	.	-	0	Parent=Os08t0323600-01
Chr08	irgsp1_rep	CDS	14172853	14172894	.	-	0	Parent=Os08t0323600-01
Chr08	irgsp1_rep	CDS	14172350	14172474	.	-	0	Parent=Os08t0323600-01
Chr08	irgsp1_rep	CDS	14171639	14171861	.	-	1	Parent=Os08t0323600-01
Chr08	irgsp1_rep	three_prime_UTR	14171510	14171638	.	-	.	Parent=Os08t0323600-01
Chr08	irgsp1_rep	mRNA	14167790	14178849	.	-	.	ID=Os08t0323600-02;Name=Os08t0323600-02;Locus_id=Os08g0323600;Note=Ribonuclease E and G domain containing protein.;Transcript_evidence=AK067514 (DDBJ%2C Best hit);ORF_evidence=B8B9Q9 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: RNA processing (GO:0006396),Cellular Component: cytoplasm (GO:0005737),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ribonuclease activity (GO:0004540),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Glycoside hydrolase%2C carbohydrate-binding (IPR002044),Ribonuclease E/G (IPR004659),Nucleic acid-binding%2C OB-fold (IPR012340),Immunoglobulin-like fold (IPR013783),Carbohydrate-binding-like fold (IPR013784),Nucleic acid-binding%2C OB-fold-like (IPR016027),RNA-binding protein AU-1/Ribonuclease E/G (IPR019307);NIAS_FLcDNA=J013108K19;Expression=AK067514;TENOR=Os08t0323600-02;KEGG=Os08t0323600-02
Chr08	irgsp1_rep	five_prime_UTR	14178729	14178849	.	-	.	Parent=Os08t0323600-02
Chr08	irgsp1_rep	CDS	14178562	14178728	.	-	0	Parent=Os08t0323600-02
Chr08	irgsp1_rep	CDS	14178037	14178143	.	-	1	Parent=Os08t0323600-02
Chr08	irgsp1_rep	CDS	14176523	14176707	.	-	2	Parent=Os08t0323600-02
Chr08	irgsp1_rep	CDS	14175188	14175497	.	-	0	Parent=Os08t0323600-02
Chr08	irgsp1_rep	CDS	14173875	14175094	.	-	2	Parent=Os08t0323600-02
Chr08	irgsp1_rep	CDS	14172999	14173316	.	-	0	Parent=Os08t0323600-02
Chr08	irgsp1_rep	CDS	14172853	14172894	.	-	0	Parent=Os08t0323600-02
Chr08	irgsp1_rep	CDS	14172350	14172474	.	-	0	Parent=Os08t0323600-02
Chr08	irgsp1_rep	CDS	14171714	14171861	.	-	1	Parent=Os08t0323600-02
Chr08	irgsp1_rep	CDS	14170211	14170283	.	-	0	Parent=Os08t0323600-02
Chr08	irgsp1_rep	CDS	14169288	14169400	.	-	2	Parent=Os08t0323600-02
Chr08	irgsp1_rep	CDS	14169044	14169163	.	-	0	Parent=Os08t0323600-02
Chr08	irgsp1_rep	CDS	14168393	14168548	.	-	0	Parent=Os08t0323600-02
Chr08	irgsp1_rep	CDS	14168123	14168296	.	-	0	Parent=Os08t0323600-02
Chr08	irgsp1_rep	three_prime_UTR	14167790	14168122	.	-	.	Parent=Os08t0323600-02
Chr08	irgsp1_rep	mRNA	14167856	14169400	.	-	.	ID=Os08t0323600-03;Name=Os08t0323600-03;Locus_id=Os08g0323600;Note=Similar to Ribonuclease E.;Transcript_evidence=AK062193 (DDBJ%2C Best hit);ORF_evidence=B0LV36 (UniProt);InterPro=RNA-binding protein AU-1/Ribonuclease E/G (IPR019307);NIAS_FLcDNA=001-046-F05;Expression=AK062193;TENOR=Os08t0323600-03;KEGG=Os08t0323600-03
Chr08	irgsp1_rep	five_prime_UTR	14169399	14169400	.	-	.	Parent=Os08t0323600-03
Chr08	irgsp1_rep	CDS	14169288	14169398	.	-	0	Parent=Os08t0323600-03
Chr08	irgsp1_rep	CDS	14169044	14169163	.	-	0	Parent=Os08t0323600-03
Chr08	irgsp1_rep	CDS	14168393	14168548	.	-	0	Parent=Os08t0323600-03
Chr08	irgsp1_rep	CDS	14168123	14168296	.	-	0	Parent=Os08t0323600-03
Chr08	irgsp1_rep	three_prime_UTR	14167856	14168122	.	-	.	Parent=Os08t0323600-03
Chr08	irgsp1_rep	mRNA	14186171	14195420	.	-	.	ID=Os08t0323700-01;Name=Os08t0323700-01;Locus_id=Os08g0323700;RAP-DB Gene Symbol Synonym(s)=Os CCC1%2C OsCCC1%2C OsLAT9;RAP-DB Gene Name Synonym(s)=cation-Cl- cotransporter 1%2C cation-chloride cotransporter 1%2C cation-chloride co-transporter;Oryzabase Gene Symbol Synonym(s)=Os CCC1%2C OsCCC1%2C CCC1%2C OsLAT9;Oryzabase Gene Name Synonym(s)=cation-Cl- cotransporter 1%2C cation-chloride cotransporter 1%2C cation-chloride co-transporter;Note=Cation-chloride cotransporter%2C Regulation of ion (Cl-%2C K+ and Na+) homeostasis%2C Cell elongation%2C Osmoregulation;Transcript_evidence=GU250733;ORF_evidence=Q6Z0E2;GO=Biological Process: transport (GO:0006810),Biological Process: ion transport (GO:0006811),Biological Process: transmembrane transport (GO:0055085),Molecular Function: transporter activity (GO:0005215),Molecular Function: cation:chloride symporter activity (GO:0015377),Cellular Component: membrane (GO:0016020),Cellular Component: integral component of membrane (GO:0016021);InterPro=SLC12A transporter family (IPR004842),Amino acid permease/ SLC12A domain (IPR004841),SLC12A transporter%2C C-terminal (IPR018491);Manual Curation=May 12%2C 2016;Literature_PMID=26983995,21369877;Oryzabase=14200;TENOR=Os08t0323700-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	14195175	14195420	.	-	.	Parent=Os08t0323700-01
Chr08	irgsp1_rep	five_prime_UTR	14195020	14195034	.	-	.	Parent=Os08t0323700-01
Chr08	irgsp1_rep	CDS	14194832	14195019	.	-	0	Parent=Os08t0323700-01
Chr08	irgsp1_rep	CDS	14193414	14193524	.	-	1	Parent=Os08t0323700-01
Chr08	irgsp1_rep	CDS	14192985	14193063	.	-	1	Parent=Os08t0323700-01
Chr08	irgsp1_rep	CDS	14192453	14192544	.	-	0	Parent=Os08t0323700-01
Chr08	irgsp1_rep	CDS	14191943	14192057	.	-	1	Parent=Os08t0323700-01
Chr08	irgsp1_rep	CDS	14191577	14191677	.	-	0	Parent=Os08t0323700-01
Chr08	irgsp1_rep	CDS	14191274	14191335	.	-	1	Parent=Os08t0323700-01
Chr08	irgsp1_rep	CDS	14190422	14190670	.	-	2	Parent=Os08t0323700-01
Chr08	irgsp1_rep	CDS	14190222	14190336	.	-	2	Parent=Os08t0323700-01
Chr08	irgsp1_rep	CDS	14189320	14189514	.	-	1	Parent=Os08t0323700-01
Chr08	irgsp1_rep	CDS	14188225	14188625	.	-	1	Parent=Os08t0323700-01
Chr08	irgsp1_rep	CDS	14187817	14187978	.	-	2	Parent=Os08t0323700-01
Chr08	irgsp1_rep	CDS	14186631	14187730	.	-	2	Parent=Os08t0323700-01
Chr08	irgsp1_rep	three_prime_UTR	14186171	14186630	.	-	.	Parent=Os08t0323700-01
Chr08	irgsp1_rep	mRNA	14207881	14208776	.	+	.	ID=Os08t0324200-01;Name=Os08t0324200-01;Locus_id=Os08g0324200;Oryzabase Gene Symbol Synonym(s)=OsSTA209;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK107845 (DDBJ%2C Best hit);ORF_evidence=A2YTX3 (UniProt);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=002-134-A02;Oryzabase=19483;Expression=AK107845;TENOR=Os08t0324200-01;KEGG=Os08t0324200-01
Chr08	irgsp1_rep	five_prime_UTR	14207881	14207925	.	+	.	Parent=Os08t0324200-01
Chr08	irgsp1_rep	CDS	14207926	14208654	.	+	0	Parent=Os08t0324200-01
Chr08	irgsp1_rep	three_prime_UTR	14208655	14208776	.	+	.	Parent=Os08t0324200-01
Chr08	irgsp1_rep	mRNA	14209973	14213318	.	-	.	ID=Os08t0324300-01;Name=Os08t0324300-01;Locus_id=Os08g0324300;Note=Transcriptional factor B3 family protein.;Transcript_evidence=AK068359 (DDBJ%2C Best hit);ORF_evidence=A3BRX2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=J013146O10;Expression=AK068359;TENOR=Os08t0324300-01;KEGG=Os08t0324300-01
Chr08	irgsp1_rep	five_prime_UTR	14212778	14213318	.	-	.	Parent=Os08t0324300-01
Chr08	irgsp1_rep	CDS	14212664	14212777	.	-	0	Parent=Os08t0324300-01
Chr08	irgsp1_rep	CDS	14211103	14211801	.	-	0	Parent=Os08t0324300-01
Chr08	irgsp1_rep	three_prime_UTR	14210872	14211102	.	-	.	Parent=Os08t0324300-01
Chr08	irgsp1_rep	three_prime_UTR	14209973	14210483	.	-	.	Parent=Os08t0324300-01
Chr08	irgsp1_rep	mRNA	14238376	14239200	.	-	.	ID=Os08t0324600-00;Name=Os08t0324600-00;Locus_id=Os08g0324600;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6Z0D6 (UniProt);TENOR=Os08t0324600-00;KEGG=Os08t0324600-00
Chr08	irgsp1_rep	CDS	14238376	14239200	.	-	0	Parent=Os08t0324600-00
Chr08	irgsp1_rep	mRNA	14260500	14263506	.	-	.	ID=Os08t0325134-00;Name=Os08t0325134-00;Locus_id=Os08g0325134;Note=Putative B3 domain-containing protein Os08g0325100.;Transcript_evidence=Q6Z0D2 (UniProt);ORF_evidence=Q6Z0D2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);TENOR=Os08t0325134-00
Chr08	irgsp1_rep	CDS	14263393	14263506	.	-	0	Parent=Os08t0325134-00
Chr08	irgsp1_rep	CDS	14262053	14262079	.	-	0	Parent=Os08t0325134-00
Chr08	irgsp1_rep	CDS	14261271	14261985	.	-	0	Parent=Os08t0325134-00
Chr08	irgsp1_rep	CDS	14260927	14261120	.	-	2	Parent=Os08t0325134-00
Chr08	irgsp1_rep	CDS	14260500	14260625	.	-	0	Parent=Os08t0325134-00
Chr08	irgsp1_rep	mRNA	14272972	14275002	.	-	.	ID=Os08t0325267-00;Name=Os08t0325267-00;Locus_id=Os08g0325267;Note=Similar to TPR Domain containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10GN0 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026);TENOR=Os08t0325267-00
Chr08	irgsp1_rep	CDS	14274835	14275002	.	-	0	Parent=Os08t0325267-00
Chr08	irgsp1_rep	CDS	14274681	14274760	.	-	0	Parent=Os08t0325267-00
Chr08	irgsp1_rep	CDS	14272972	14273020	.	-	1	Parent=Os08t0325267-00
Chr08	irgsp1_rep	mRNA	14319949	14320752	.	+	.	ID=Os08t0326000-01;Name=Os08t0326000-01;Locus_id=Os08g0326000;Note=Nucleoside phosphatase GDA1/CD39 family protein.;Transcript_evidence=AK106729 (DDBJ%2C Best hit);ORF_evidence=B6SWT6 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Nucleoside phosphatase GDA1/CD39 (IPR000407);NIAS_FLcDNA=002-114-H08;Expression=AK106729;TENOR=Os08t0326000-01;KEGG=Os08t0326000-01
Chr08	irgsp1_rep	five_prime_UTR	14319949	14319971	.	+	.	Parent=Os08t0326000-01
Chr08	irgsp1_rep	CDS	14319972	14320727	.	+	0	Parent=Os08t0326000-01
Chr08	irgsp1_rep	three_prime_UTR	14320728	14320752	.	+	.	Parent=Os08t0326000-01
Chr08	irgsp1_rep	mRNA	14325350	14328132	.	-	.	ID=Os08t0326100-01;Name=Os08t0326100-01;Locus_id=Os08g0326100;Note=Forkhead-associated domain containing protein.;Transcript_evidence=AK120478 (DDBJ%2C Best hit);ORF_evidence=NP_199590.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Forkhead-associated (FHA) domain (IPR000253),SMAD/FHA domain (IPR008984);NIAS_FLcDNA=J013111L14;Expression=AK120478;TENOR=Os08t0326100-01;KEGG=Os08t0326100-01
Chr08	irgsp1_rep	five_prime_UTR	14327717	14328132	.	-	.	Parent=Os08t0326100-01
Chr08	irgsp1_rep	five_prime_UTR	14327413	14327501	.	-	.	Parent=Os08t0326100-01
Chr08	irgsp1_rep	CDS	14326946	14327412	.	-	0	Parent=Os08t0326100-01
Chr08	irgsp1_rep	CDS	14325727	14326525	.	-	1	Parent=Os08t0326100-01
Chr08	irgsp1_rep	three_prime_UTR	14325350	14325726	.	-	.	Parent=Os08t0326100-01
Chr08	irgsp1_rep	mRNA	14331008	14338357	.	+	.	ID=Os08t0326300-01;Name=Os08t0326300-01;Locus_id=Os08g0326300;Note=Transposase%2C MuDR%2C plant domain containing protein.;Transcript_evidence=AK099609 (DDBJ%2C Best hit);ORF_evidence=Q2QXK8 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Transposase%2C MuDR%2C plant (IPR004332),Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);NIAS_FLcDNA=J013049F07;TENOR=Os08t0326300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	14331008	14331251	.	+	.	Parent=Os08t0326300-01
Chr08	irgsp1_rep	CDS	14331252	14331259	.	+	0	Parent=Os08t0326300-01
Chr08	irgsp1_rep	CDS	14331759	14331851	.	+	1	Parent=Os08t0326300-01
Chr08	irgsp1_rep	CDS	14331977	14332982	.	+	1	Parent=Os08t0326300-01
Chr08	irgsp1_rep	CDS	14333080	14334632	.	+	0	Parent=Os08t0326300-01
Chr08	irgsp1_rep	CDS	14334715	14334843	.	+	1	Parent=Os08t0326300-01
Chr08	irgsp1_rep	CDS	14334915	14334966	.	+	1	Parent=Os08t0326300-01
Chr08	irgsp1_rep	three_prime_UTR	14334967	14335079	.	+	.	Parent=Os08t0326300-01
Chr08	irgsp1_rep	three_prime_UTR	14337836	14338357	.	+	.	Parent=Os08t0326300-01
Chr08	irgsp1_rep	mRNA	14340574	14342940	.	-	.	ID=Os08t0326400-01;Name=Os08t0326400-01;Locus_id=Os08g0326400;CGSNL Gene Symbol=RPL7A;CGSNL Gene Name=RIBOSOMAL PROTEIN L7A;Oryzabase Gene Symbol Synonym(s)=OsRPL7A;Oryzabase Gene Name Synonym(s)=ribosomal protein L7A%2C r-protein L7A;Note=60S ribosomal protein L7a.;Transcript_evidence=AK121204 (DDBJ%2C Best hit),AK062210 (DDBJ%2C Best hit),AK098843 (DDBJ%2C Best hit);ORF_evidence=P35685 (UniProt);GO=Biological Process: ribosome biogenesis (GO:0042254),Cellular Component: ribonucleoprotein complex (GO:0030529);InterPro=Ribosomal protein L7A/L8 (IPR001921),Ribosomal protein L7Ae conserved site (IPR004037),Ribosomal protein L7Ae/L30e/S12e/Gadd45 (IPR004038),Ribosomal protein L7Ae/L8/Nhp2 family (IPR018492);NIAS_FLcDNA=J023087N22,001-047-A04,J013000B08;Oryzabase=15711;Expression=AK121204;TENOR=Os08t0326400-01;KEGG=Os08t0326400-01
Chr08	irgsp1_rep	five_prime_UTR	14342849	14342940	.	-	.	Parent=Os08t0326400-01
Chr08	irgsp1_rep	CDS	14342846	14342848	.	-	0	Parent=Os08t0326400-01
Chr08	irgsp1_rep	CDS	14342532	14342579	.	-	0	Parent=Os08t0326400-01
Chr08	irgsp1_rep	CDS	14342227	14342428	.	-	0	Parent=Os08t0326400-01
Chr08	irgsp1_rep	CDS	14341462	14341631	.	-	2	Parent=Os08t0326400-01
Chr08	irgsp1_rep	CDS	14341219	14341347	.	-	0	Parent=Os08t0326400-01
Chr08	irgsp1_rep	CDS	14341037	14341129	.	-	0	Parent=Os08t0326400-01
Chr08	irgsp1_rep	CDS	14340795	14340926	.	-	0	Parent=Os08t0326400-01
Chr08	irgsp1_rep	three_prime_UTR	14340574	14340794	.	-	.	Parent=Os08t0326400-01
Chr08	irgsp1_rep	mRNA	14349346	14354580	.	+	.	ID=Os08t0326500-01;Name=Os08t0326500-01;Locus_id=Os08g0326500;Note=Similar to glycosyl hydrolase family 17 protein.;Transcript_evidence=AK109514 (DDBJ%2C Best hit);ORF_evidence=NP_193451.2 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=002-105-A05;TENOR=Os08t0326500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	14349346	14349557	.	+	.	Parent=Os08t0326500-01
Chr08	irgsp1_rep	CDS	14349558	14349928	.	+	0	Parent=Os08t0326500-01
Chr08	irgsp1_rep	CDS	14353054	14354182	.	+	1	Parent=Os08t0326500-01
Chr08	irgsp1_rep	three_prime_UTR	14354183	14354580	.	+	.	Parent=Os08t0326500-01
Chr08	irgsp1_rep	mRNA	14356981	14360812	.	+	.	ID=Os08t0326600-01;Name=Os08t0326600-01;Locus_id=Os08g0326600;CGSNL Gene Symbol=GMPS1;CGSNL Gene Name=GMP SYNTHETASE 1;Oryzabase Gene Symbol Synonym(s)=OsGMPS1;Oryzabase Gene Name Synonym(s)=GMP synthase (glutamine-hydrolyzing)%2C GMP synthetase 1;Note=Similar to GMP synthetase.;Transcript_evidence=AK065219 (DDBJ%2C Best hit);ORF_evidence=XP_003083586.1 (RefSeq);GO=Biological Process: purine nucleotide biosynthetic process (GO:0006164),Biological Process: GMP biosynthetic process (GO:0006177),Biological Process: asparagine biosynthetic process (GO:0006529),Biological Process: glutamine metabolic process (GO:0006541),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: GMP synthase (glutamine-hydrolyzing) activity (GO:0003922),Molecular Function: asparagine synthase (glutamine-hydrolyzing) activity (GO:0004066),Molecular Function: ATP binding (GO:0005524);InterPro=GMP synthase%2C C-terminal (IPR001674),Asparagine synthase (IPR001962),GMP synthase%2C N-terminal (IPR004739),Anthranilate synthase component II/delta crystallin (IPR006220),Glutamine amidotransferase superfamily (IPR011702),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Glutamine amidotransferase type 1 (IPR017926);NIAS_FLcDNA=J013002G12;Oryzabase=17719;Expression=AK065219;TENOR=Os08t0326600-01;KEGG=Os08t0326600-01 (EC:6.3.5.2)
Chr08	irgsp1_rep	five_prime_UTR	14356981	14357062	.	+	.	Parent=Os08t0326600-01
Chr08	irgsp1_rep	CDS	14357063	14357638	.	+	0	Parent=Os08t0326600-01
Chr08	irgsp1_rep	CDS	14358602	14358852	.	+	0	Parent=Os08t0326600-01
Chr08	irgsp1_rep	CDS	14358937	14359312	.	+	1	Parent=Os08t0326600-01
Chr08	irgsp1_rep	CDS	14359452	14359583	.	+	0	Parent=Os08t0326600-01
Chr08	irgsp1_rep	CDS	14359667	14359842	.	+	0	Parent=Os08t0326600-01
Chr08	irgsp1_rep	CDS	14360418	14360541	.	+	1	Parent=Os08t0326600-01
Chr08	irgsp1_rep	three_prime_UTR	14360542	14360812	.	+	.	Parent=Os08t0326600-01
Chr08	irgsp1_rep	mRNA	14362935	14366462	.	+	.	ID=Os08t0326700-00;Name=Os08t0326700-00;Locus_id=Os08g0326700;Oryzabase Gene Symbol Synonym(s)=OsSub55%2C SUB55;Oryzabase Gene Name Synonym(s)=Subtilisin 55%2C SUBTILISIN 55;Note=Similar to subtilisin-like protease.;Transcript_evidence=EU972114 (DDBJ);ORF_evidence=NP_001151755.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);Oryzabase=20139;TENOR=Os08t0326700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	14362935	14363053	.	+	.	Parent=Os08t0326700-00
Chr08	irgsp1_rep	CDS	14363054	14363071	.	+	0	Parent=Os08t0326700-00
Chr08	irgsp1_rep	CDS	14363233	14363314	.	+	0	Parent=Os08t0326700-00
Chr08	irgsp1_rep	CDS	14363409	14363573	.	+	2	Parent=Os08t0326700-00
Chr08	irgsp1_rep	CDS	14363795	14363906	.	+	2	Parent=Os08t0326700-00
Chr08	irgsp1_rep	CDS	14364459	14364993	.	+	1	Parent=Os08t0326700-00
Chr08	irgsp1_rep	CDS	14365110	14365207	.	+	0	Parent=Os08t0326700-00
Chr08	irgsp1_rep	CDS	14365326	14366445	.	+	1	Parent=Os08t0326700-00
Chr08	irgsp1_rep	three_prime_UTR	14366446	14366462	.	+	.	Parent=Os08t0326700-00
Chr08	irgsp1_rep	mRNA	14372565	14377015	.	-	.	ID=Os08t0326900-01;Name=Os08t0326900-01;Locus_id=Os08g0326900;Note=Similar to WRKY DNA binding domain containing protein%2C expressed.;Transcript_evidence=AK120635 (DDBJ%2C Best hit);ORF_evidence=Q2QYJ7 (UniProt);NIAS_FLcDNA=J013153J11;TENOR=Os08t0326900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	14376775	14377015	.	-	.	Parent=Os08t0326900-01
Chr08	irgsp1_rep	CDS	14376697	14376774	.	-	0	Parent=Os08t0326900-01
Chr08	irgsp1_rep	CDS	14375639	14375747	.	-	0	Parent=Os08t0326900-01
Chr08	irgsp1_rep	CDS	14374289	14374617	.	-	2	Parent=Os08t0326900-01
Chr08	irgsp1_rep	three_prime_UTR	14374275	14374288	.	-	.	Parent=Os08t0326900-01
Chr08	irgsp1_rep	three_prime_UTR	14372565	14374052	.	-	.	Parent=Os08t0326900-01
Chr08	irgsp1_rep	mRNA	14374809	14376937	.	-	.	ID=Os08t0326900-02;Name=Os08t0326900-02;Locus_id=Os08g0326900;Note=Similar to cDNA clone:J013153J11%2C full insert sequence.;Transcript_evidence=AK108041 (DDBJ%2C Best hit);ORF_evidence=B7F655 (UniProt);NIAS_FLcDNA=002-137-D07;Expression=AK108041;TENOR=Os08t0326900-02;KEGG=Os08t0326900-02
Chr08	irgsp1_rep	five_prime_UTR	14376775	14376937	.	-	.	Parent=Os08t0326900-02
Chr08	irgsp1_rep	CDS	14376634	14376774	.	-	0	Parent=Os08t0326900-02
Chr08	irgsp1_rep	three_prime_UTR	14374809	14376633	.	-	.	Parent=Os08t0326900-02
Chr08	irgsp1_rep	mRNA	14397927	14403072	.	+	.	ID=Os08t0327100-01;Name=Os08t0327100-01;Locus_id=Os08g0327100;RAP-DB Gene Symbol Synonym(s)=OsGAUT4;RAP-DB Gene Name Synonym(s)=Galacturonosyltransferase 4;CGSNL Gene Symbol=GAUT4;CGSNL Gene Name=GALACTURONOSYLTRANSFERASE 4;Oryzabase Gene Symbol Synonym(s)=OsGAUT4%2C OsGAUT6%2C GAUT6;Oryzabase Gene Name Synonym(s)=Galacturonosyltransferase 4%2C galacturonosyltransferase 6;Note=Galacturonosyltransferase%2C Pectin biosynthesis;Transcript_evidence=AK073839;ORF_evidence=Q7F1F3;GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Nucleotide-diphospho-sugar transferases (IPR029044),Glycosyl transferase%2C family 8 (IPR002495);NIAS_FLcDNA=J033070B13;Manual Curation=February 28%2C 2018;Literature_PMID=29431741;Oryzabase=22592;Expression=AK073839;TENOR=Os08t0327100-01;KEGG=Os08t0327100-01 (EC:2.4.1.43)
Chr08	irgsp1_rep	five_prime_UTR	14397927	14397980	.	+	.	Parent=Os08t0327100-01
Chr08	irgsp1_rep	CDS	14397981	14398089	.	+	0	Parent=Os08t0327100-01
Chr08	irgsp1_rep	CDS	14398225	14398259	.	+	2	Parent=Os08t0327100-01
Chr08	irgsp1_rep	CDS	14398354	14398395	.	+	0	Parent=Os08t0327100-01
Chr08	irgsp1_rep	CDS	14398495	14398588	.	+	0	Parent=Os08t0327100-01
Chr08	irgsp1_rep	CDS	14398718	14398914	.	+	2	Parent=Os08t0327100-01
Chr08	irgsp1_rep	CDS	14400180	14400424	.	+	0	Parent=Os08t0327100-01
Chr08	irgsp1_rep	CDS	14400542	14400899	.	+	1	Parent=Os08t0327100-01
Chr08	irgsp1_rep	CDS	14400983	14401558	.	+	0	Parent=Os08t0327100-01
Chr08	irgsp1_rep	CDS	14402414	14402689	.	+	0	Parent=Os08t0327100-01
Chr08	irgsp1_rep	three_prime_UTR	14402690	14403072	.	+	.	Parent=Os08t0327100-01
Chr08	irgsp1_rep	mRNA	14400588	14402685	.	-	.	ID=Os08t0327150-00;Name=Os08t0327150-00;Locus_id=Os08g0327150;Note=Non-protein coding transcript.;Transcript_evidence=tplb0056b02 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os08t0327150-00
Chr08	irgsp1_rep	exon	14402430	14402685	.	-	.	Parent=Os08t0327150-00
Chr08	irgsp1_rep	exon	14401007	14401574	.	-	.	Parent=Os08t0327150-00
Chr08	irgsp1_rep	exon	14400588	14400916	.	-	.	Parent=Os08t0327150-00
Chr08	irgsp1_rep	mRNA	14404164	14406568	.	-	.	ID=Os08t0327200-01;Name=Os08t0327200-01;Locus_id=Os08g0327200;Oryzabase Gene Symbol Synonym(s)=OsPGL4%2C PGL4;Oryzabase Gene Name Synonym(s)=Polygalacturonases-Like 4%2C PG-like 4;Note=Pectin lyase fold/virulence factor domain containing protein.;Transcript_evidence=AK069803 (DDBJ%2C Best hit);ORF_evidence=A1KXJ6 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=J023027O10;Oryzabase=22281;Expression=AK069803;TENOR=Os08t0327200-01;KEGG=Os08t0327200-01
Chr08	irgsp1_rep	five_prime_UTR	14406260	14406568	.	-	.	Parent=Os08t0327200-01
Chr08	irgsp1_rep	CDS	14406092	14406259	.	-	0	Parent=Os08t0327200-01
Chr08	irgsp1_rep	CDS	14405854	14405995	.	-	0	Parent=Os08t0327200-01
Chr08	irgsp1_rep	CDS	14405484	14405659	.	-	2	Parent=Os08t0327200-01
Chr08	irgsp1_rep	CDS	14404869	14405387	.	-	0	Parent=Os08t0327200-01
Chr08	irgsp1_rep	CDS	14404577	14404795	.	-	0	Parent=Os08t0327200-01
Chr08	irgsp1_rep	three_prime_UTR	14404164	14404576	.	-	.	Parent=Os08t0327200-01
Chr08	irgsp1_rep	mRNA	14414336	14418991	.	+	.	ID=Os08t0327400-01;Name=Os08t0327400-01;Locus_id=Os08g0327400;Note=Similar to Enoyl-ACP reductase (Fragment).;Transcript_evidence=AK070992 (DDBJ%2C Best hit);ORF_evidence=O24207 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023077K10;Expression=AK070992;TENOR=Os08t0327400-01;KEGG=Os08t0327400-01 (EC:1.3.1.9)
Chr08	irgsp1_rep	five_prime_UTR	14414336	14414529	.	+	.	Parent=Os08t0327400-01
Chr08	irgsp1_rep	five_prime_UTR	14415072	14415075	.	+	.	Parent=Os08t0327400-01
Chr08	irgsp1_rep	CDS	14415076	14415325	.	+	0	Parent=Os08t0327400-01
Chr08	irgsp1_rep	CDS	14416342	14416451	.	+	2	Parent=Os08t0327400-01
Chr08	irgsp1_rep	CDS	14416543	14416598	.	+	0	Parent=Os08t0327400-01
Chr08	irgsp1_rep	CDS	14416687	14416771	.	+	1	Parent=Os08t0327400-01
Chr08	irgsp1_rep	CDS	14416851	14416898	.	+	0	Parent=Os08t0327400-01
Chr08	irgsp1_rep	CDS	14417054	14417128	.	+	0	Parent=Os08t0327400-01
Chr08	irgsp1_rep	CDS	14417233	14417344	.	+	0	Parent=Os08t0327400-01
Chr08	irgsp1_rep	CDS	14417656	14417707	.	+	2	Parent=Os08t0327400-01
Chr08	irgsp1_rep	CDS	14417792	14417843	.	+	1	Parent=Os08t0327400-01
Chr08	irgsp1_rep	CDS	14418009	14418066	.	+	0	Parent=Os08t0327400-01
Chr08	irgsp1_rep	CDS	14418336	14418434	.	+	2	Parent=Os08t0327400-01
Chr08	irgsp1_rep	CDS	14418541	14418671	.	+	2	Parent=Os08t0327400-01
Chr08	irgsp1_rep	three_prime_UTR	14418672	14418991	.	+	.	Parent=Os08t0327400-01
Chr08	irgsp1_rep	mRNA	14422818	14425657	.	-	.	ID=Os08t0327501-01;Name=Os08t0327501-01;Locus_id=Os08g0327501;Note=Conserved hypothetical protein.;Transcript_evidence=AK241818 (DDBJ%2C Best hit);ORF_evidence=NP_001175520.1 (RefSeq);NIAS_FLcDNA=J065211N12;TENOR=Os08t0327501-01;KEGG=Os08t0327501-01
Chr08	irgsp1_rep	five_prime_UTR	14425493	14425657	.	-	.	Parent=Os08t0327501-01
Chr08	irgsp1_rep	CDS	14425136	14425492	.	-	0	Parent=Os08t0327501-01
Chr08	irgsp1_rep	three_prime_UTR	14424809	14425135	.	-	.	Parent=Os08t0327501-01
Chr08	irgsp1_rep	three_prime_UTR	14422818	14424588	.	-	.	Parent=Os08t0327501-01
Chr08	irgsp1_rep	mRNA	14426981	14427198	.	+	.	ID=Os08t0327550-00;Name=Os08t0327550-00;Locus_id=Os08g0327550;Note=Similar to predicted protein.;Transcript_evidence=EU949494 (DDBJ);ORF_evidence=XP_002327722.1 (RefSeq);TENOR=Os08t0327550-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	14426981	14427045	.	+	.	Parent=Os08t0327550-00
Chr08	irgsp1_rep	CDS	14427046	14427192	.	+	0	Parent=Os08t0327550-00
Chr08	irgsp1_rep	three_prime_UTR	14427193	14427198	.	+	.	Parent=Os08t0327550-00
Chr08	irgsp1_rep	mRNA	14450170	14450893	.	+	.	ID=Os08t0327700-01;Name=Os08t0327700-01;Locus_id=Os08g0327700;CGSNL Gene Symbol=LEA4;CGSNL Gene Name=LATE EMBRYOGENESIS ABUNDANT PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OsLEA4;Oryzabase Gene Name Synonym(s)=late embryogenesis abundant protein 4;Note=Late embryogenesis abundant (LEA) group 1 family protein.;Transcript_evidence=AK107930 (DDBJ%2C Best hit);ORF_evidence=NP_001150746.1 (RefSeq);GO=Biological Process: embryo development (GO:0009790);InterPro=Late embryogenesis abundant protein%2C LEA-25/LEA-D113 (IPR005513);NIAS_FLcDNA=002-135-A01;Oryzabase=10173;Expression=AK107930;TENOR=Os08t0327700-01;KEGG=Os08t0327700-01
Chr08	irgsp1_rep	five_prime_UTR	14450170	14450257	.	+	.	Parent=Os08t0327700-01
Chr08	irgsp1_rep	CDS	14450258	14450710	.	+	0	Parent=Os08t0327700-01
Chr08	irgsp1_rep	three_prime_UTR	14450711	14450893	.	+	.	Parent=Os08t0327700-01
Chr08	irgsp1_rep	mRNA	14464707	14465234	.	-	.	ID=Os08t0328050-00;Name=Os08t0328050-00;Locus_id=Os08g0328050;Note=Hypothetical protein.;Transcript_evidence=EU945299 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0328050-00
Chr08	irgsp1_rep	CDS	14464707	14465234	.	-	0	Parent=Os08t0328050-00
Chr08	irgsp1_rep	mRNA	14475916	14482101	.	+	.	ID=Os08t0328300-01;Name=Os08t0328300-01;Locus_id=Os08g0328300;Note=ENT domain containing protein.;Transcript_evidence=AK102227 (DDBJ%2C Best hit);ORF_evidence=B4FDM5 (UniProt);InterPro=EMSY N-terminal (IPR005491);NIAS_FLcDNA=J033087O03;Expression=AK102227;TENOR=Os08t0328300-01;KEGG=Os08t0328300-01
Chr08	irgsp1_rep	five_prime_UTR	14475916	14476278	.	+	.	Parent=Os08t0328300-01
Chr08	irgsp1_rep	CDS	14476279	14476306	.	+	0	Parent=Os08t0328300-01
Chr08	irgsp1_rep	CDS	14477246	14477457	.	+	2	Parent=Os08t0328300-01
Chr08	irgsp1_rep	CDS	14477566	14477675	.	+	0	Parent=Os08t0328300-01
Chr08	irgsp1_rep	CDS	14477755	14478007	.	+	1	Parent=Os08t0328300-01
Chr08	irgsp1_rep	CDS	14478120	14478329	.	+	0	Parent=Os08t0328300-01
Chr08	irgsp1_rep	CDS	14478404	14478472	.	+	0	Parent=Os08t0328300-01
Chr08	irgsp1_rep	CDS	14480588	14480833	.	+	0	Parent=Os08t0328300-01
Chr08	irgsp1_rep	CDS	14480914	14480982	.	+	0	Parent=Os08t0328300-01
Chr08	irgsp1_rep	CDS	14481050	14481113	.	+	0	Parent=Os08t0328300-01
Chr08	irgsp1_rep	CDS	14481710	14481825	.	+	2	Parent=Os08t0328300-01
Chr08	irgsp1_rep	three_prime_UTR	14481826	14482101	.	+	.	Parent=Os08t0328300-01
Chr08	irgsp1_rep	mRNA	14475957	14482280	.	+	.	ID=Os08t0328300-02;Name=Os08t0328300-02;Locus_id=Os08g0328300;Note=ENT domain containing protein.;Transcript_evidence=AK105392 (DDBJ%2C Best hit);ORF_evidence=B4FDM5 (UniProt);InterPro=EMSY N-terminal (IPR005491);NIAS_FLcDNA=001-123-A04;Expression=AK105392;TENOR=Os08t0328300-02;KEGG=Os08t0328300-02
Chr08	irgsp1_rep	five_prime_UTR	14475957	14476278	.	+	.	Parent=Os08t0328300-02
Chr08	irgsp1_rep	CDS	14476279	14476306	.	+	0	Parent=Os08t0328300-02
Chr08	irgsp1_rep	CDS	14477246	14477457	.	+	2	Parent=Os08t0328300-02
Chr08	irgsp1_rep	CDS	14477566	14477675	.	+	0	Parent=Os08t0328300-02
Chr08	irgsp1_rep	CDS	14477755	14478007	.	+	1	Parent=Os08t0328300-02
Chr08	irgsp1_rep	CDS	14478120	14478329	.	+	0	Parent=Os08t0328300-02
Chr08	irgsp1_rep	CDS	14478404	14478472	.	+	0	Parent=Os08t0328300-02
Chr08	irgsp1_rep	CDS	14480588	14480833	.	+	0	Parent=Os08t0328300-02
Chr08	irgsp1_rep	CDS	14480914	14480982	.	+	0	Parent=Os08t0328300-02
Chr08	irgsp1_rep	CDS	14481050	14481113	.	+	0	Parent=Os08t0328300-02
Chr08	irgsp1_rep	CDS	14481710	14481825	.	+	2	Parent=Os08t0328300-02
Chr08	irgsp1_rep	three_prime_UTR	14481826	14482280	.	+	.	Parent=Os08t0328300-02
Chr08	irgsp1_rep	mRNA	14480567	14481133	.	-	.	ID=Os08t0328350-00;Name=Os08t0328350-00;Locus_id=Os08g0328350;Note=Non-protein coding transcript.;Transcript_evidence=AK355936 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0328350-00
Chr08	irgsp1_rep	exon	14480567	14481133	.	-	.	Parent=Os08t0328350-00
Chr08	irgsp1_rep	mRNA	14491844	14494591	.	-	.	ID=Os08t0328600-01;Name=Os08t0328600-01;Locus_id=Os08g0328600;Oryzabase Gene Symbol Synonym(s)=OsFbox437%2C Os_F0277;Oryzabase Gene Name Synonym(s)=F-box protein 437;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK241176 (DDBJ%2C Best hit);ORF_evidence=NP_001175521.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J065118H17;Oryzabase=17208;TENOR=Os08t0328600-01;KEGG=Os08t0328600-01
Chr08	irgsp1_rep	five_prime_UTR	14494559	14494591	.	-	.	Parent=Os08t0328600-01
Chr08	irgsp1_rep	CDS	14492918	14494558	.	-	0	Parent=Os08t0328600-01
Chr08	irgsp1_rep	three_prime_UTR	14492860	14492917	.	-	.	Parent=Os08t0328600-01
Chr08	irgsp1_rep	three_prime_UTR	14491844	14492143	.	-	.	Parent=Os08t0328600-01
Chr08	irgsp1_rep	mRNA	14583144	14583512	.	+	.	ID=Os08t0330301-00;Name=Os08t0330301-00;Locus_id=Os08g0330301;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=EU943039 (DDBJ);ORF_evidence=A2X7S6 (UniProt);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083);TENOR=Os08t0330301-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	14583144	14583284	.	+	.	Parent=Os08t0330301-00
Chr08	irgsp1_rep	CDS	14583285	14583512	.	+	0	Parent=Os08t0330301-00
Chr08	irgsp1_rep	mRNA	14599906	14600802	.	+	.	ID=Os08t0330800-01;Name=Os08t0330800-01;Locus_id=Os08g0330800;Note=Conserved hypothetical protein.;Transcript_evidence=AK107544 (DDBJ%2C Best hit);ORF_evidence=Q94E02 (UniProt);NIAS_FLcDNA=002-129-H12;Expression=AK107544;TENOR=Os08t0330800-01;KEGG=Os08t0330800-01
Chr08	irgsp1_rep	five_prime_UTR	14599906	14599938	.	+	.	Parent=Os08t0330800-01
Chr08	irgsp1_rep	CDS	14599939	14600250	.	+	0	Parent=Os08t0330800-01
Chr08	irgsp1_rep	three_prime_UTR	14600251	14600802	.	+	.	Parent=Os08t0330800-01
Chr08	irgsp1_rep	mRNA	14601466	14602232	.	+	.	ID=Os08t0330900-00;Name=Os08t0330900-00;Locus_id=Os08g0330900;Oryzabase Gene Symbol Synonym(s)=Os_F0451;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001061562.1 (RefSeq);Oryzabase=17458;TENOR=Os08t0330900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	14601466	14601710	.	+	0	Parent=Os08t0330900-00
Chr08	irgsp1_rep	CDS	14601722	14602232	.	+	1	Parent=Os08t0330900-00
Chr08	irgsp1_rep	mRNA	14607647	14608222	.	-	.	ID=Os08t0331000-01;Name=Os08t0331000-01;Locus_id=Os08g0331000;Note=Conserved hypothetical protein.;Transcript_evidence=AK243239 (DDBJ%2C Best hit);ORF_evidence=NP_001061563.2 (RefSeq);NIAS_FLcDNA=J100045L01;TENOR=Os08t0331000-01;KEGG=Os08t0331000-01
Chr08	irgsp1_rep	five_prime_UTR	14608192	14608222	.	-	.	Parent=Os08t0331000-01
Chr08	irgsp1_rep	CDS	14608017	14608191	.	-	0	Parent=Os08t0331000-01
Chr08	irgsp1_rep	CDS	14607854	14607900	.	-	2	Parent=Os08t0331000-01
Chr08	irgsp1_rep	three_prime_UTR	14607647	14607853	.	-	.	Parent=Os08t0331000-01
Chr08	irgsp1_rep	mRNA	14608718	14609383	.	+	.	ID=Os08t0331100-00;Name=Os08t0331100-00;Locus_id=Os08g0331100;Note=Chloramphenicol acetyltransferase-like domain domain containing protein.;Transcript_evidence=BT069640 (DDBJ);ORF_evidence=Q6Z9N5 (UniProt);InterPro=Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os08t0331100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	14608718	14608981	.	+	.	Parent=Os08t0331100-00
Chr08	irgsp1_rep	CDS	14608982	14609383	.	+	0	Parent=Os08t0331100-00
Chr08	irgsp1_rep	mRNA	14663398	14664089	.	-	.	ID=Os08t0331800-01;Name=Os08t0331800-01;Locus_id=Os08g0331800;Note=Conserved hypothetical protein.;Transcript_evidence=AK243688 (DDBJ%2C Best hit);ORF_evidence=NP_001175522.1 (RefSeq);NIAS_FLcDNA=J100090O04;TENOR=Os08t0331800-01;KEGG=Os08t0331800-01
Chr08	irgsp1_rep	five_prime_UTR	14664007	14664089	.	-	.	Parent=Os08t0331800-01
Chr08	irgsp1_rep	CDS	14663895	14664006	.	-	0	Parent=Os08t0331800-01
Chr08	irgsp1_rep	CDS	14663718	14663764	.	-	2	Parent=Os08t0331800-01
Chr08	irgsp1_rep	three_prime_UTR	14663398	14663717	.	-	.	Parent=Os08t0331800-01
Chr08	irgsp1_rep	mRNA	14675041	14676325	.	+	.	ID=Os08t0331900-01;Name=Os08t0331900-01;Locus_id=Os08g0331900;Note=Similar to Leucine Rich Repeat family protein%2C expressed.;Transcript_evidence=AK102219 (DDBJ%2C Best hit);ORF_evidence=Q2R102 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033087L13;TENOR=Os08t0331900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	14675041	14676096	.	+	0	Parent=Os08t0331900-01
Chr08	irgsp1_rep	three_prime_UTR	14676097	14676325	.	+	.	Parent=Os08t0331900-01
Chr08	irgsp1_rep	mRNA	14688914	14695534	.	-	.	ID=Os08t0332100-01;Name=Os08t0332100-01;Locus_id=Os08g0332100;Note=Conserved hypothetical protein.;Transcript_evidence=AK067415 (DDBJ%2C Best hit);ORF_evidence=NP_001047118.2 (RefSeq);NIAS_FLcDNA=J013101K10;TENOR=Os08t0332100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	14695533	14695534	.	-	.	Parent=Os08t0332100-01
Chr08	irgsp1_rep	CDS	14695299	14695532	.	-	0	Parent=Os08t0332100-01
Chr08	irgsp1_rep	three_prime_UTR	14695221	14695298	.	-	.	Parent=Os08t0332100-01
Chr08	irgsp1_rep	three_prime_UTR	14694836	14695157	.	-	.	Parent=Os08t0332100-01
Chr08	irgsp1_rep	three_prime_UTR	14688914	14689838	.	-	.	Parent=Os08t0332100-01
Chr08	irgsp1_rep	mRNA	14690354	14693336	.	+	.	ID=Os08t0332150-00;Name=Os08t0332150-00;Locus_id=Os08g0332150;Note=Conserved hypothetical protein.;Transcript_evidence=AK071428 (DDBJ%2C Secondary hit);ORF_evidence=Q688W9 (UniProt);TENOR=Os08t0332150-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	14690354	14691000	.	+	.	Parent=Os08t0332150-00
Chr08	irgsp1_rep	CDS	14691001	14691363	.	+	0	Parent=Os08t0332150-00
Chr08	irgsp1_rep	three_prime_UTR	14691364	14691753	.	+	.	Parent=Os08t0332150-00
Chr08	irgsp1_rep	three_prime_UTR	14691971	14693336	.	+	.	Parent=Os08t0332150-00
Chr08	irgsp1_rep	mRNA	14697388	14703564	.	-	.	ID=Os08t0332400-00;Name=Os08t0332400-00;Locus_id=Os08g0332400;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8B9T1 (UniProt);TENOR=Os08t0332400-00
Chr08	irgsp1_rep	CDS	14703499	14703564	.	-	0	Parent=Os08t0332400-00
Chr08	irgsp1_rep	CDS	14703210	14703263	.	-	0	Parent=Os08t0332400-00
Chr08	irgsp1_rep	CDS	14697388	14697483	.	-	0	Parent=Os08t0332400-00
Chr08	irgsp1_rep	mRNA	14715297	14721000	.	-	.	ID=Os08t0332600-00;Name=Os08t0332600-00;Locus_id=Os08g0332600;Note=Disease resistance protein domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001061568.2 (RefSeq);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os08t0332600-00
Chr08	irgsp1_rep	CDS	14720774	14721000	.	-	0	Parent=Os08t0332600-00
Chr08	irgsp1_rep	CDS	14717708	14717802	.	-	1	Parent=Os08t0332600-00
Chr08	irgsp1_rep	CDS	14716661	14717565	.	-	2	Parent=Os08t0332600-00
Chr08	irgsp1_rep	CDS	14715729	14716566	.	-	0	Parent=Os08t0332600-00
Chr08	irgsp1_rep	CDS	14715297	14715658	.	-	2	Parent=Os08t0332600-00
Chr08	irgsp1_rep	mRNA	14724917	14732048	.	-	.	ID=Os08t0332700-01;Name=Os08t0332700-01;Locus_id=Os08g0332700;Note=Conserved hypothetical protein.;Transcript_evidence=AK099878 (DDBJ%2C Best hit);ORF_evidence=B8B9T3 (UniProt);NIAS_FLcDNA=J013111I02;TENOR=Os08t0332700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	14731981	14732048	.	-	.	Parent=Os08t0332700-01
Chr08	irgsp1_rep	CDS	14731566	14731980	.	-	0	Parent=Os08t0332700-01
Chr08	irgsp1_rep	CDS	14731316	14731455	.	-	2	Parent=Os08t0332700-01
Chr08	irgsp1_rep	CDS	14730578	14730655	.	-	0	Parent=Os08t0332700-01
Chr08	irgsp1_rep	CDS	14730310	14730389	.	-	0	Parent=Os08t0332700-01
Chr08	irgsp1_rep	CDS	14729319	14729425	.	-	1	Parent=Os08t0332700-01
Chr08	irgsp1_rep	CDS	14728286	14728320	.	-	2	Parent=Os08t0332700-01
Chr08	irgsp1_rep	three_prime_UTR	14727901	14728285	.	-	.	Parent=Os08t0332700-01
Chr08	irgsp1_rep	three_prime_UTR	14727043	14727150	.	-	.	Parent=Os08t0332700-01
Chr08	irgsp1_rep	three_prime_UTR	14726902	14726949	.	-	.	Parent=Os08t0332700-01
Chr08	irgsp1_rep	three_prime_UTR	14726480	14726722	.	-	.	Parent=Os08t0332700-01
Chr08	irgsp1_rep	three_prime_UTR	14726344	14726397	.	-	.	Parent=Os08t0332700-01
Chr08	irgsp1_rep	three_prime_UTR	14726158	14726260	.	-	.	Parent=Os08t0332700-01
Chr08	irgsp1_rep	three_prime_UTR	14724917	14725334	.	-	.	Parent=Os08t0332700-01
Chr08	irgsp1_rep	mRNA	14730041	14732048	.	-	.	ID=Os08t0332700-02;Name=Os08t0332700-02;Locus_id=Os08g0332700;Note=Hypothetical conserved gene.;Transcript_evidence=AK109737 (DDBJ%2C Best hit);ORF_evidence=B8B9T3 (UniProt);NIAS_FLcDNA=002-146-C11;Expression=AK109737;TENOR=Os08t0332700-02;KEGG=Os08t0332700-02
Chr08	irgsp1_rep	five_prime_UTR	14731981	14732048	.	-	.	Parent=Os08t0332700-02
Chr08	irgsp1_rep	CDS	14731495	14731980	.	-	0	Parent=Os08t0332700-02
Chr08	irgsp1_rep	three_prime_UTR	14730041	14731494	.	-	.	Parent=Os08t0332700-02
Chr08	irgsp1_rep	mRNA	14724938	14732013	.	-	.	ID=Os08t0332700-03;Name=Os08t0332700-03;Locus_id=Os08g0332700;Note=Pentatricopeptide repeat containing protein.;Transcript_evidence=AK067028 (DDBJ%2C Best hit);ORF_evidence=Q9SGX1 (UniProt);NIAS_FLcDNA=J013091B08;Expression=AK067028;TENOR=Os08t0332700-03;KEGG=Os08t0332700-03
Chr08	irgsp1_rep	five_prime_UTR	14731981	14732013	.	-	.	Parent=Os08t0332700-03
Chr08	irgsp1_rep	CDS	14731566	14731980	.	-	0	Parent=Os08t0332700-03
Chr08	irgsp1_rep	CDS	14731316	14731455	.	-	2	Parent=Os08t0332700-03
Chr08	irgsp1_rep	CDS	14730578	14730655	.	-	0	Parent=Os08t0332700-03
Chr08	irgsp1_rep	CDS	14730310	14730389	.	-	0	Parent=Os08t0332700-03
Chr08	irgsp1_rep	CDS	14729319	14729403	.	-	1	Parent=Os08t0332700-03
Chr08	irgsp1_rep	CDS	14727901	14728320	.	-	0	Parent=Os08t0332700-03
Chr08	irgsp1_rep	CDS	14727043	14727150	.	-	0	Parent=Os08t0332700-03
Chr08	irgsp1_rep	CDS	14726882	14726949	.	-	0	Parent=Os08t0332700-03
Chr08	irgsp1_rep	CDS	14726635	14726722	.	-	1	Parent=Os08t0332700-03
Chr08	irgsp1_rep	CDS	14726480	14726551	.	-	0	Parent=Os08t0332700-03
Chr08	irgsp1_rep	CDS	14726344	14726397	.	-	0	Parent=Os08t0332700-03
Chr08	irgsp1_rep	CDS	14726171	14726260	.	-	0	Parent=Os08t0332700-03
Chr08	irgsp1_rep	three_prime_UTR	14726158	14726170	.	-	.	Parent=Os08t0332700-03
Chr08	irgsp1_rep	three_prime_UTR	14724938	14725334	.	-	.	Parent=Os08t0332700-03
Chr08	irgsp1_rep	mRNA	14725904	14731989	.	-	.	ID=Os08t0332700-04;Name=Os08t0332700-04;Locus_id=Os08g0332700;Note=Hypothetical conserved gene.;Transcript_evidence=AK099417 (DDBJ%2C Best hit);ORF_evidence=B8B9T3 (UniProt);NIAS_FLcDNA=J013006H18;Expression=AK099417;TENOR=Os08t0332700-04;KEGG=Os08t0332700-04
Chr08	irgsp1_rep	five_prime_UTR	14731981	14731989	.	-	.	Parent=Os08t0332700-04
Chr08	irgsp1_rep	CDS	14731566	14731980	.	-	0	Parent=Os08t0332700-04
Chr08	irgsp1_rep	CDS	14731316	14731455	.	-	2	Parent=Os08t0332700-04
Chr08	irgsp1_rep	CDS	14730578	14730655	.	-	0	Parent=Os08t0332700-04
Chr08	irgsp1_rep	CDS	14730310	14730389	.	-	0	Parent=Os08t0332700-04
Chr08	irgsp1_rep	CDS	14729319	14729403	.	-	1	Parent=Os08t0332700-04
Chr08	irgsp1_rep	CDS	14727901	14728320	.	-	0	Parent=Os08t0332700-04
Chr08	irgsp1_rep	CDS	14727043	14727150	.	-	0	Parent=Os08t0332700-04
Chr08	irgsp1_rep	CDS	14726902	14726949	.	-	0	Parent=Os08t0332700-04
Chr08	irgsp1_rep	CDS	14726708	14726722	.	-	0	Parent=Os08t0332700-04
Chr08	irgsp1_rep	three_prime_UTR	14726635	14726707	.	-	.	Parent=Os08t0332700-04
Chr08	irgsp1_rep	three_prime_UTR	14726480	14726551	.	-	.	Parent=Os08t0332700-04
Chr08	irgsp1_rep	three_prime_UTR	14726344	14726397	.	-	.	Parent=Os08t0332700-04
Chr08	irgsp1_rep	three_prime_UTR	14725904	14726260	.	-	.	Parent=Os08t0332700-04
Chr08	irgsp1_rep	mRNA	14738595	14742273	.	+	.	ID=Os08t0332800-01;Name=Os08t0332800-01;Locus_id=Os08g0332800;Oryzabase Gene Symbol Synonym(s)=OsMED14_1%2C MED14_1;Oryzabase Gene Name Synonym(s)=Mediator 14_1;Note=Similar to F7O18.23 protein (SWP1) (Struwwelpeter 1 protein).;Transcript_evidence=AK119925 (DDBJ%2C Best hit);ORF_evidence=NP_187125.1 (RefSeq);GO=Biological Process: regulation of transcription from RNA polymerase II promoter (GO:0006357),Cellular Component: mediator complex (GO:0016592),Molecular Function: RNA polymerase II transcription cofactor activity (GO:0001104);InterPro=Mediator complex%2C subunit Med14 (IPR013947);NIAS_FLcDNA=002-183-G12;Oryzabase=20968;Expression=AK119925;TENOR=Os08t0332800-01;KEGG=Os08t0332800-01
Chr08	irgsp1_rep	five_prime_UTR	14738595	14738959	.	+	.	Parent=Os08t0332800-01
Chr08	irgsp1_rep	CDS	14738960	14739193	.	+	0	Parent=Os08t0332800-01
Chr08	irgsp1_rep	CDS	14740998	14742089	.	+	0	Parent=Os08t0332800-01
Chr08	irgsp1_rep	three_prime_UTR	14742090	14742273	.	+	.	Parent=Os08t0332800-01
Chr08	irgsp1_rep	mRNA	14756042	14758951	.	+	.	ID=Os08t0333000-01;Name=Os08t0333000-01;Locus_id=Os08g0333000;Note=Similar to SWP (STRUWWELPETER).;Transcript_evidence=AK108356 (DDBJ%2C Best hit);ORF_evidence=NP_187125.1 (RefSeq);NIAS_FLcDNA=002-142-C05;TENOR=Os08t0333000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	14756042	14756042	.	+	.	Parent=Os08t0333000-01
Chr08	irgsp1_rep	CDS	14756043	14756410	.	+	0	Parent=Os08t0333000-01
Chr08	irgsp1_rep	CDS	14757911	14758715	.	+	1	Parent=Os08t0333000-01
Chr08	irgsp1_rep	three_prime_UTR	14758716	14758951	.	+	.	Parent=Os08t0333000-01
Chr08	irgsp1_rep	mRNA	14757918	14759421	.	+	.	ID=Os08t0333000-02;Name=Os08t0333000-02;Locus_id=Os08g0333000;Note=Similar to predicted protein.;Transcript_evidence=AK287420 (DDBJ%2C Best hit);ORF_evidence=NP_187125.1 (RefSeq);NIAS_FLcDNA=J043001D20;TENOR=Os08t0333000-02;KEGG=Os08t0333000-02
Chr08	irgsp1_rep	CDS	14757918	14758715	.	+	0	Parent=Os08t0333000-02
Chr08	irgsp1_rep	three_prime_UTR	14758716	14758815	.	+	.	Parent=Os08t0333000-02
Chr08	irgsp1_rep	three_prime_UTR	14758959	14759421	.	+	.	Parent=Os08t0333000-02
Chr08	irgsp1_rep	mRNA	14760294	14766266	.	-	.	ID=Os08t0333100-01;Name=Os08t0333100-01;Locus_id=Os08g0333100;Note=Conserved hypothetical protein.;Transcript_evidence=AK103806 (DDBJ%2C Best hit);ORF_evidence=A2YU22 (UniProt);NIAS_FLcDNA=J033146N17;Expression=AK103806;TENOR=Os08t0333100-01;KEGG=Os08t0333100-01
Chr08	irgsp1_rep	five_prime_UTR	14766234	14766266	.	-	.	Parent=Os08t0333100-01
Chr08	irgsp1_rep	CDS	14765792	14766233	.	-	0	Parent=Os08t0333100-01
Chr08	irgsp1_rep	CDS	14762324	14762610	.	-	2	Parent=Os08t0333100-01
Chr08	irgsp1_rep	CDS	14761798	14762025	.	-	0	Parent=Os08t0333100-01
Chr08	irgsp1_rep	CDS	14760423	14760911	.	-	0	Parent=Os08t0333100-01
Chr08	irgsp1_rep	three_prime_UTR	14760294	14760422	.	-	.	Parent=Os08t0333100-01
Chr08	irgsp1_rep	mRNA	14760423	14762613	.	+	.	ID=Os08t0333233-00;Name=Os08t0333233-00;Locus_id=Os08g0333233;Note=Hypothetical protein.;Transcript_evidence=AK361018 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0333233-00
Chr08	irgsp1_rep	five_prime_UTR	14760423	14760447	.	+	.	Parent=Os08t0333233-00
Chr08	irgsp1_rep	CDS	14760448	14760899	.	+	0	Parent=Os08t0333233-00
Chr08	irgsp1_rep	CDS	14761788	14761893	.	+	1	Parent=Os08t0333233-00
Chr08	irgsp1_rep	three_prime_UTR	14761894	14762013	.	+	.	Parent=Os08t0333233-00
Chr08	irgsp1_rep	three_prime_UTR	14762311	14762613	.	+	.	Parent=Os08t0333233-00
Chr08	irgsp1_rep	mRNA	14779988	14782859	.	+	.	ID=Os08t0333500-00;Name=Os08t0333500-00;Locus_id=Os08g0333500;Note=Putative B3 domain-containing protein Os08g0333500.;Transcript_evidence=Q6YTQ4 (UniProt);ORF_evidence=Q6YTQ4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);TENOR=Os08t0333500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	14779988	14780279	.	+	0	Parent=Os08t0333500-00
Chr08	irgsp1_rep	CDS	14780383	14780445	.	+	2	Parent=Os08t0333500-00
Chr08	irgsp1_rep	CDS	14780700	14780863	.	+	2	Parent=Os08t0333500-00
Chr08	irgsp1_rep	CDS	14781368	14781462	.	+	0	Parent=Os08t0333500-00
Chr08	irgsp1_rep	CDS	14781759	14781970	.	+	1	Parent=Os08t0333500-00
Chr08	irgsp1_rep	CDS	14782214	14782251	.	+	2	Parent=Os08t0333500-00
Chr08	irgsp1_rep	CDS	14782373	14782666	.	+	0	Parent=Os08t0333500-00
Chr08	irgsp1_rep	CDS	14782752	14782859	.	+	0	Parent=Os08t0333500-00
Chr08	irgsp1_rep	mRNA	14801324	14801561	.	+	.	ID=Os08t0333701-00;Name=Os08t0333701-00;Locus_id=Os08g0333701;Note=Non-protein coding transcript.;Transcript_evidence=EU942775 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0333701-00
Chr08	irgsp1_rep	exon	14801324	14801561	.	+	.	Parent=Os08t0333701-00
Chr08	irgsp1_rep	mRNA	14877081	14878120	.	+	.	ID=Os08t0334250-00;Name=Os08t0334250-00;Locus_id=Os08g0334250;Note=Conserved hypothetical protein.;Transcript_evidence=BT062873 (DDBJ);ORF_evidence=B9G0D9 (UniProt);TENOR=Os08t0334250-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	14877081	14877525	.	+	.	Parent=Os08t0334250-00
Chr08	irgsp1_rep	CDS	14877526	14877843	.	+	0	Parent=Os08t0334250-00
Chr08	irgsp1_rep	three_prime_UTR	14877844	14878120	.	+	.	Parent=Os08t0334250-00
Chr08	irgsp1_rep	mRNA	14909182	14909973	.	-	.	ID=Os08t0334300-00;Name=Os08t0334300-00;Locus_id=Os08g0334300;Note=Legume lectin%2C beta chain domain containing protein.;Transcript_evidence=EU949842 (DDBJ);ORF_evidence=NP_001061573.2 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Legume lectin%2C beta chain (IPR001220),Concanavalin A-like lectin/glucanase (IPR008985),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Legume lectin%2C beta chain%2C Mn/Ca-binding site (IPR019825);TENOR=Os08t0334300-00
Chr08	irgsp1_rep	CDS	14909182	14909973	.	-	0	Parent=Os08t0334300-00
Chr08	irgsp1_rep	mRNA	14947983	14950883	.	+	.	ID=Os08t0334701-01;Name=Os08t0334701-01;Locus_id=Os08g0334701;Note=Conserved hypothetical protein.;Transcript_evidence=AK288967 (DDBJ%2C Best hit);ORF_evidence=Q67VH8 (UniProt);NIAS_FLcDNA=J090084L21;TENOR=Os08t0334701-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	14947983	14949661	.	+	.	Parent=Os08t0334701-01
Chr08	irgsp1_rep	CDS	14949662	14949769	.	+	0	Parent=Os08t0334701-01
Chr08	irgsp1_rep	three_prime_UTR	14949770	14950883	.	+	.	Parent=Os08t0334701-01
Chr08	irgsp1_rep	mRNA	14976007	14977932	.	+	.	ID=Os08t0334900-01;Name=Os08t0334900-01;Locus_id=Os08g0334900;Note=Xyloglucan fucosyltransferase family protein.;Transcript_evidence=AK060562 (DDBJ%2C Best hit);ORF_evidence=A2YU28 (UniProt);GO=Biological Process: cell wall biogenesis (GO:0042546),Cellular Component: membrane (GO:0016020),Molecular Function: galactoside 2-alpha-L-fucosyltransferase activity (GO:0008107);InterPro=Xyloglucan fucosyltransferase (IPR004938);NIAS_FLcDNA=001-022-G05;Expression=AK060562;TENOR=Os08t0334900-01;KEGG=Os08t0334900-01
Chr08	irgsp1_rep	five_prime_UTR	14976007	14976099	.	+	.	Parent=Os08t0334900-01
Chr08	irgsp1_rep	CDS	14976100	14977890	.	+	0	Parent=Os08t0334900-01
Chr08	irgsp1_rep	three_prime_UTR	14977891	14977932	.	+	.	Parent=Os08t0334900-01
Chr08	irgsp1_rep	mRNA	14981455	14985306	.	-	.	ID=Os08t0335000-00;Name=Os08t0335000-00;Locus_id=Os08g0335000;Note=Similar to EMB2733/ESP3 (EMBRYO DEFECTIVE 2733)%3B ATP-dependent RNA helicase.;Transcript_evidence=CT835960 (DDBJ%2C Best hit);ORF_evidence=NP_174527.2 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524);InterPro=Helicase%2C C-terminal (IPR001650),Helicase-associated domain (IPR007502);TENOR=Os08t0335000-00;KEGG=Os08t0335000-00 (EC:3.6.4.13)
Chr08	irgsp1_rep	five_prime_UTR	14985305	14985306	.	-	.	Parent=Os08t0335000-00
Chr08	irgsp1_rep	CDS	14985269	14985304	.	-	0	Parent=Os08t0335000-00
Chr08	irgsp1_rep	CDS	14984193	14985184	.	-	0	Parent=Os08t0335000-00
Chr08	irgsp1_rep	CDS	14983986	14984048	.	-	1	Parent=Os08t0335000-00
Chr08	irgsp1_rep	CDS	14982525	14982537	.	-	1	Parent=Os08t0335000-00
Chr08	irgsp1_rep	three_prime_UTR	14982414	14982524	.	-	.	Parent=Os08t0335000-00
Chr08	irgsp1_rep	three_prime_UTR	14982238	14982307	.	-	.	Parent=Os08t0335000-00
Chr08	irgsp1_rep	three_prime_UTR	14982071	14982132	.	-	.	Parent=Os08t0335000-00
Chr08	irgsp1_rep	three_prime_UTR	14981912	14981984	.	-	.	Parent=Os08t0335000-00
Chr08	irgsp1_rep	three_prime_UTR	14981455	14981814	.	-	.	Parent=Os08t0335000-00
Chr08	irgsp1_rep	mRNA	14997281	15003021	.	-	.	ID=Os08t0335200-01;Name=Os08t0335200-01;Locus_id=Os08g0335200;Note=Hypothetical protein.;Transcript_evidence=AK110961 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-174-A12;TENOR=Os08t0335200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	15003020	15003021	.	-	.	Parent=Os08t0335200-01
Chr08	irgsp1_rep	CDS	15002667	15003019	.	-	0	Parent=Os08t0335200-01
Chr08	irgsp1_rep	CDS	15001648	15001648	.	-	1	Parent=Os08t0335200-01
Chr08	irgsp1_rep	three_prime_UTR	15001592	15001647	.	-	.	Parent=Os08t0335200-01
Chr08	irgsp1_rep	three_prime_UTR	14997281	14998520	.	-	.	Parent=Os08t0335200-01
Chr08	irgsp1_rep	mRNA	14997552	15006831	.	+	.	ID=Os08t0335500-01;Name=Os08t0335500-01;Locus_id=Os08g0335500;Note=Hypothetical conserved gene.;Transcript_evidence=AK242235 (DDBJ%2C Best hit);ORF_evidence=NP_001175524.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Legume lectin%2C beta chain%2C Mn/Ca-binding site (IPR019825),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J075178C15;TENOR=Os08t0335500-01;KEGG=Os08t0335500-01 (EC:2.7.11.1)
Chr08	irgsp1_rep	five_prime_UTR	14997552	14997559	.	+	.	Parent=Os08t0335500-01
Chr08	irgsp1_rep	CDS	14997560	14998158	.	+	0	Parent=Os08t0335500-01
Chr08	irgsp1_rep	CDS	14998297	14998487	.	+	1	Parent=Os08t0335500-01
Chr08	irgsp1_rep	CDS	15004672	15004737	.	+	2	Parent=Os08t0335500-01
Chr08	irgsp1_rep	CDS	15005376	15006463	.	+	2	Parent=Os08t0335500-01
Chr08	irgsp1_rep	three_prime_UTR	15006464	15006831	.	+	.	Parent=Os08t0335500-01
Chr08	irgsp1_rep	mRNA	15008765	15009689	.	+	.	ID=Os08t0335600-01;Name=Os08t0335600-01;Locus_id=Os08g0335600;Note=Protein of unknown function DUF568%2C DOMON-like domain containing protein.;Transcript_evidence=AK106063 (DDBJ%2C Best hit);ORF_evidence=NP_001148749.1 (RefSeq);InterPro=DOMON domain (IPR005018),Uncharacterised conserved protein UCP037471 (IPR017214);NIAS_FLcDNA=001-206-G07;Expression=AK106063;TENOR=Os08t0335600-01;KEGG=Os08t0335600-01
Chr08	irgsp1_rep	five_prime_UTR	15008765	15008844	.	+	.	Parent=Os08t0335600-01
Chr08	irgsp1_rep	CDS	15008845	15009459	.	+	0	Parent=Os08t0335600-01
Chr08	irgsp1_rep	three_prime_UTR	15009460	15009689	.	+	.	Parent=Os08t0335600-01
Chr08	irgsp1_rep	mRNA	15026423	15028512	.	-	.	ID=Os08t0336200-01;Name=Os08t0336200-01;Locus_id=Os08g0336200;Note=Hypothetical gene.;Transcript_evidence=AK111135 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-176-D07;Expression=AK111135;TENOR=Os08t0336200-01;KEGG=Os08t0336200-01
Chr08	irgsp1_rep	five_prime_UTR	15028511	15028512	.	-	.	Parent=Os08t0336200-01
Chr08	irgsp1_rep	CDS	15028244	15028510	.	-	0	Parent=Os08t0336200-01
Chr08	irgsp1_rep	three_prime_UTR	15028224	15028243	.	-	.	Parent=Os08t0336200-01
Chr08	irgsp1_rep	three_prime_UTR	15027620	15027706	.	-	.	Parent=Os08t0336200-01
Chr08	irgsp1_rep	three_prime_UTR	15026423	15026649	.	-	.	Parent=Os08t0336200-01
Chr08	irgsp1_rep	mRNA	15040539	15040976	.	-	.	ID=Os08t0336250-00;Name=Os08t0336250-00;Locus_id=Os08g0336250;Note=Non-protein coding transcript.;Transcript_evidence=AK368721 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0336250-00
Chr08	irgsp1_rep	exon	15040539	15040976	.	-	.	Parent=Os08t0336250-00
Chr08	irgsp1_rep	mRNA	15059110	15073588	.	+	.	ID=Os08t0336500-00;Name=Os08t0336500-00;Locus_id=Os08g0336500;Note=Zinc finger%2C PHD-type domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G0E4 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),DNA (cytosine-5)-methyltransferase 1%2C replication foci domain (IPR022702);TENOR=Os08t0336500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	15059110	15059432	.	+	0	Parent=Os08t0336500-00
Chr08	irgsp1_rep	CDS	15059618	15059717	.	+	1	Parent=Os08t0336500-00
Chr08	irgsp1_rep	CDS	15060782	15060823	.	+	0	Parent=Os08t0336500-00
Chr08	irgsp1_rep	CDS	15060976	15061172	.	+	0	Parent=Os08t0336500-00
Chr08	irgsp1_rep	CDS	15062654	15062750	.	+	1	Parent=Os08t0336500-00
Chr08	irgsp1_rep	CDS	15062846	15062941	.	+	0	Parent=Os08t0336500-00
Chr08	irgsp1_rep	CDS	15063637	15063875	.	+	0	Parent=Os08t0336500-00
Chr08	irgsp1_rep	CDS	15063970	15064053	.	+	1	Parent=Os08t0336500-00
Chr08	irgsp1_rep	CDS	15064140	15064427	.	+	1	Parent=Os08t0336500-00
Chr08	irgsp1_rep	CDS	15064900	15064960	.	+	1	Parent=Os08t0336500-00
Chr08	irgsp1_rep	CDS	15068335	15068604	.	+	0	Parent=Os08t0336500-00
Chr08	irgsp1_rep	CDS	15068678	15068784	.	+	0	Parent=Os08t0336500-00
Chr08	irgsp1_rep	CDS	15068905	15069059	.	+	1	Parent=Os08t0336500-00
Chr08	irgsp1_rep	CDS	15069403	15069659	.	+	2	Parent=Os08t0336500-00
Chr08	irgsp1_rep	CDS	15073490	15073588	.	+	0	Parent=Os08t0336500-00
Chr08	irgsp1_rep	mRNA	15066529	15072875	.	-	.	ID=Os08t0336700-01;Name=Os08t0336700-01;Locus_id=Os08g0336700;Note=Hypothetical gene.;Transcript_evidence=AK289102 (DDBJ%2C Best hit);ORF_evidence=Q6Z984 (UniProt);NIAS_FLcDNA=J090096G03;TENOR=Os08t0336700-01;KEGG=Os08t0336700-01
Chr08	irgsp1_rep	five_prime_UTR	15072479	15072875	.	-	.	Parent=Os08t0336700-01
Chr08	irgsp1_rep	CDS	15072005	15072478	.	-	0	Parent=Os08t0336700-01
Chr08	irgsp1_rep	three_prime_UTR	15066529	15072004	.	-	.	Parent=Os08t0336700-01
Chr08	irgsp1_rep	mRNA	15094723	15098372	.	+	.	ID=Os08t0337001-00;Name=Os08t0337001-00;Locus_id=Os08g0337001;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G0E6 (UniProt);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),DNA (cytosine-5)-methyltransferase 1%2C replication foci domain (IPR022702);TENOR=Os08t0337001-00;KEGG=Os08t0337001-00
Chr08	irgsp1_rep	CDS	15094723	15095135	.	+	0	Parent=Os08t0337001-00
Chr08	irgsp1_rep	CDS	15095220	15095316	.	+	1	Parent=Os08t0337001-00
Chr08	irgsp1_rep	CDS	15096310	15096354	.	+	0	Parent=Os08t0337001-00
Chr08	irgsp1_rep	CDS	15096523	15096734	.	+	0	Parent=Os08t0337001-00
Chr08	irgsp1_rep	CDS	15098051	15098153	.	+	1	Parent=Os08t0337001-00
Chr08	irgsp1_rep	CDS	15098244	15098372	.	+	0	Parent=Os08t0337001-00
Chr08	irgsp1_rep	mRNA	15106952	15109324	.	+	.	ID=Os08t0337100-01;Name=Os08t0337100-01;Locus_id=Os08g0337100;Note=Conserved hypothetical protein.;Transcript_evidence=AK064536 (DDBJ%2C Best hit);ORF_evidence=B9G0E6 (UniProt);NIAS_FLcDNA=002-111-H10;TENOR=Os08t0337100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	15106952	15106987	.	+	0	Parent=Os08t0337100-01
Chr08	irgsp1_rep	CDS	15107480	15109102	.	+	0	Parent=Os08t0337100-01
Chr08	irgsp1_rep	three_prime_UTR	15109103	15109324	.	+	.	Parent=Os08t0337100-01
Chr08	irgsp1_rep	mRNA	15115008	15130489	.	+	.	ID=Os08t0337300-01;Name=Os08t0337300-01;Locus_id=Os08g0337300;Note=Hypothetical conserved gene.;Transcript_evidence=AK067509 (DDBJ%2C Best hit);ORF_evidence=Q6Z978 (UniProt);InterPro=DNA (cytosine-5)-methyltransferase 1%2C replication foci domain (IPR022702);NIAS_FLcDNA=J013108C03;Expression=AK067509;TENOR=Os08t0337300-01;KEGG=Os08t0337300-01
Chr08	irgsp1_rep	five_prime_UTR	15115008	15115139	.	+	.	Parent=Os08t0337300-01
Chr08	irgsp1_rep	five_prime_UTR	15115393	15115419	.	+	.	Parent=Os08t0337300-01
Chr08	irgsp1_rep	CDS	15115420	15115829	.	+	0	Parent=Os08t0337300-01
Chr08	irgsp1_rep	CDS	15115920	15116016	.	+	1	Parent=Os08t0337300-01
Chr08	irgsp1_rep	CDS	15116687	15116734	.	+	0	Parent=Os08t0337300-01
Chr08	irgsp1_rep	CDS	15116825	15116972	.	+	0	Parent=Os08t0337300-01
Chr08	irgsp1_rep	CDS	15128981	15130251	.	+	2	Parent=Os08t0337300-01
Chr08	irgsp1_rep	three_prime_UTR	15130252	15130489	.	+	.	Parent=Os08t0337300-01
Chr08	irgsp1_rep	mRNA	15115012	15120808	.	+	.	ID=Os08t0337300-02;Name=Os08t0337300-02;Locus_id=Os08g0337300;Note=Zinc finger%2C PHD-type domain containing protein.;Transcript_evidence=AK072420 (DDBJ%2C Best hit);ORF_evidence=B9G0E7 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),DNA (cytosine-5)-methyltransferase 1%2C replication foci domain (IPR022702);NIAS_FLcDNA=J023083E12;Expression=AK072420;TENOR=Os08t0337300-02;KEGG=Os08t0337300-02
Chr08	irgsp1_rep	five_prime_UTR	15115012	15115139	.	+	.	Parent=Os08t0337300-02
Chr08	irgsp1_rep	five_prime_UTR	15115393	15115419	.	+	.	Parent=Os08t0337300-02
Chr08	irgsp1_rep	CDS	15115420	15115829	.	+	0	Parent=Os08t0337300-02
Chr08	irgsp1_rep	CDS	15115920	15116016	.	+	1	Parent=Os08t0337300-02
Chr08	irgsp1_rep	CDS	15116687	15116734	.	+	0	Parent=Os08t0337300-02
Chr08	irgsp1_rep	CDS	15116825	15117048	.	+	0	Parent=Os08t0337300-02
Chr08	irgsp1_rep	CDS	15118609	15118705	.	+	1	Parent=Os08t0337300-02
Chr08	irgsp1_rep	CDS	15118798	15118893	.	+	0	Parent=Os08t0337300-02
Chr08	irgsp1_rep	CDS	15119539	15119786	.	+	0	Parent=Os08t0337300-02
Chr08	irgsp1_rep	CDS	15119874	15119957	.	+	1	Parent=Os08t0337300-02
Chr08	irgsp1_rep	CDS	15120029	15120482	.	+	1	Parent=Os08t0337300-02
Chr08	irgsp1_rep	three_prime_UTR	15120483	15120808	.	+	.	Parent=Os08t0337300-02
Chr08	irgsp1_rep	mRNA	15122110	15130489	.	+	.	ID=Os08t0337300-03;Name=Os08t0337300-03;Locus_id=Os08g0337300;Note=Hypothetical conserved gene.;Transcript_evidence=AK099602 (DDBJ%2C Best hit);ORF_evidence=B9G0E7 (UniProt);NIAS_FLcDNA=J013047F14;Expression=AK099602;TENOR=Os08t0337300-03;KEGG=Os08t0337300-03
Chr08	irgsp1_rep	five_prime_UTR	15122110	15122110	.	+	.	Parent=Os08t0337300-03
Chr08	irgsp1_rep	CDS	15122111	15122266	.	+	0	Parent=Os08t0337300-03
Chr08	irgsp1_rep	CDS	15122358	15122510	.	+	0	Parent=Os08t0337300-03
Chr08	irgsp1_rep	three_prime_UTR	15122511	15123011	.	+	.	Parent=Os08t0337300-03
Chr08	irgsp1_rep	three_prime_UTR	15124550	15124591	.	+	.	Parent=Os08t0337300-03
Chr08	irgsp1_rep	three_prime_UTR	15127129	15127239	.	+	.	Parent=Os08t0337300-03
Chr08	irgsp1_rep	three_prime_UTR	15128006	15128077	.	+	.	Parent=Os08t0337300-03
Chr08	irgsp1_rep	three_prime_UTR	15128450	15128568	.	+	.	Parent=Os08t0337300-03
Chr08	irgsp1_rep	three_prime_UTR	15128670	15128733	.	+	.	Parent=Os08t0337300-03
Chr08	irgsp1_rep	three_prime_UTR	15128818	15130489	.	+	.	Parent=Os08t0337300-03
Chr08	irgsp1_rep	mRNA	15147940	15152713	.	-	.	ID=Os08t0337601-00;Name=Os08t0337601-00;Locus_id=Os08g0337601;Note=Hypothetical conserved gene.;Transcript_evidence=AK103669 (DDBJ%2C Secondary hit);ORF_evidence=Q7FAF2 (UniProt);Expression=AK103669;TENOR=Os08t0337601-00;KEGG=Os08t0337601-00
Chr08	irgsp1_rep	five_prime_UTR	15152649	15152713	.	-	.	Parent=Os08t0337601-00
Chr08	irgsp1_rep	five_prime_UTR	15151952	15152049	.	-	.	Parent=Os08t0337601-00
Chr08	irgsp1_rep	five_prime_UTR	15151315	15151393	.	-	.	Parent=Os08t0337601-00
Chr08	irgsp1_rep	CDS	15151314	15151314	.	-	0	Parent=Os08t0337601-00
Chr08	irgsp1_rep	CDS	15150090	15150880	.	-	2	Parent=Os08t0337601-00
Chr08	irgsp1_rep	three_prime_UTR	15150035	15150089	.	-	.	Parent=Os08t0337601-00
Chr08	irgsp1_rep	three_prime_UTR	15147940	15150024	.	-	.	Parent=Os08t0337601-00
Chr08	irgsp1_rep	mRNA	15163657	15166999	.	-	.	ID=Os08t0337700-01;Name=Os08t0337700-01;Locus_id=Os08g0337700;Note=RabGAP/TBC domain containing protein.;Transcript_evidence=AK100576 (DDBJ%2C Best hit);ORF_evidence=XP_002884671.1 (RefSeq);GO=Biological Process: regulation of Rab GTPase activity (GO:0032313),Cellular Component: intracellular (GO:0005622),Molecular Function: Rab GTPase activator activity (GO:0005097);InterPro=Rab-GAP/TBC domain (IPR000195);NIAS_FLcDNA=J023105H06;Expression=AK100576;TENOR=Os08t0337700-01;KEGG=Os08t0337700-01
Chr08	irgsp1_rep	five_prime_UTR	15166571	15166999	.	-	.	Parent=Os08t0337700-01
Chr08	irgsp1_rep	five_prime_UTR	15166270	15166465	.	-	.	Parent=Os08t0337700-01
Chr08	irgsp1_rep	CDS	15165712	15166269	.	-	0	Parent=Os08t0337700-01
Chr08	irgsp1_rep	CDS	15165231	15165347	.	-	0	Parent=Os08t0337700-01
Chr08	irgsp1_rep	CDS	15164978	15165156	.	-	0	Parent=Os08t0337700-01
Chr08	irgsp1_rep	CDS	15164765	15164858	.	-	1	Parent=Os08t0337700-01
Chr08	irgsp1_rep	CDS	15164584	15164661	.	-	0	Parent=Os08t0337700-01
Chr08	irgsp1_rep	CDS	15164376	15164477	.	-	0	Parent=Os08t0337700-01
Chr08	irgsp1_rep	CDS	15163979	15164110	.	-	0	Parent=Os08t0337700-01
Chr08	irgsp1_rep	three_prime_UTR	15163657	15163978	.	-	.	Parent=Os08t0337700-01
Chr08	irgsp1_rep	mRNA	15196859	15198349	.	+	.	ID=Os08t0337800-00;Name=Os08t0337800-00;Locus_id=Os08g0337800;Note=Protein of unknown function DUF247%2C plant domain containing protein.;Transcript_evidence=tplb0010c23 (Wheat FLcDNA);ORF_evidence=Q6ZC88 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);TENOR=Os08t0337800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	15196859	15197482	.	+	0	Parent=Os08t0337800-00
Chr08	irgsp1_rep	CDS	15197603	15198349	.	+	0	Parent=Os08t0337800-00
Chr08	irgsp1_rep	mRNA	15199790	15201818	.	-	.	ID=Os08t0338000-01;Name=Os08t0338000-01;Locus_id=Os08g0338000;Note=Antihaemostatic protein domain containing protein.;Transcript_evidence=AK068483 (DDBJ%2C Best hit);ORF_evidence=A2ZMN2 (UniProt);InterPro=Myb/SANT-like domain (IPR024752);NIAS_FLcDNA=J013152M15;Expression=AK068483;TENOR=Os08t0338000-01;KEGG=Os08t0338000-01
Chr08	irgsp1_rep	five_prime_UTR	15201329	15201818	.	-	.	Parent=Os08t0338000-01
Chr08	irgsp1_rep	five_prime_UTR	15200978	15201186	.	-	.	Parent=Os08t0338000-01
Chr08	irgsp1_rep	CDS	15200537	15200845	.	-	0	Parent=Os08t0338000-01
Chr08	irgsp1_rep	CDS	15200233	15200442	.	-	0	Parent=Os08t0338000-01
Chr08	irgsp1_rep	three_prime_UTR	15199790	15200232	.	-	.	Parent=Os08t0338000-01
Chr08	irgsp1_rep	mRNA	15203206	15211938	.	-	.	ID=Os08t0338200-01;Name=Os08t0338200-01;Locus_id=Os08g0338200;Oryzabase Gene Name Synonym(s)=TFIIH p62 subunit;Note=Kelch related domain containing protein.;Transcript_evidence=AK068124 (DDBJ%2C Best hit);ORF_evidence=C3SAF5 (UniProt);InterPro=BSD (IPR005607);NIAS_FLcDNA=J013129O14;Oryzabase=21068;Expression=AK068124;TENOR=Os08t0338200-01;KEGG=Os08t0338200-01
Chr08	irgsp1_rep	five_prime_UTR	15211790	15211938	.	-	.	Parent=Os08t0338200-01
Chr08	irgsp1_rep	CDS	15211715	15211789	.	-	0	Parent=Os08t0338200-01
Chr08	irgsp1_rep	CDS	15211087	15211165	.	-	0	Parent=Os08t0338200-01
Chr08	irgsp1_rep	CDS	15210696	15210769	.	-	2	Parent=Os08t0338200-01
Chr08	irgsp1_rep	CDS	15210525	15210588	.	-	0	Parent=Os08t0338200-01
Chr08	irgsp1_rep	CDS	15210120	15210258	.	-	2	Parent=Os08t0338200-01
Chr08	irgsp1_rep	CDS	15209274	15209349	.	-	1	Parent=Os08t0338200-01
Chr08	irgsp1_rep	CDS	15209083	15209178	.	-	0	Parent=Os08t0338200-01
Chr08	irgsp1_rep	CDS	15208905	15208949	.	-	0	Parent=Os08t0338200-01
Chr08	irgsp1_rep	CDS	15208222	15208278	.	-	0	Parent=Os08t0338200-01
Chr08	irgsp1_rep	CDS	15207898	15208053	.	-	0	Parent=Os08t0338200-01
Chr08	irgsp1_rep	CDS	15207720	15207785	.	-	0	Parent=Os08t0338200-01
Chr08	irgsp1_rep	CDS	15207451	15207574	.	-	0	Parent=Os08t0338200-01
Chr08	irgsp1_rep	CDS	15206965	15207021	.	-	2	Parent=Os08t0338200-01
Chr08	irgsp1_rep	CDS	15206761	15206885	.	-	2	Parent=Os08t0338200-01
Chr08	irgsp1_rep	CDS	15206478	15206669	.	-	0	Parent=Os08t0338200-01
Chr08	irgsp1_rep	CDS	15205332	15205445	.	-	0	Parent=Os08t0338200-01
Chr08	irgsp1_rep	CDS	15205146	15205223	.	-	0	Parent=Os08t0338200-01
Chr08	irgsp1_rep	CDS	15204269	15204316	.	-	0	Parent=Os08t0338200-01
Chr08	irgsp1_rep	CDS	15203931	15203999	.	-	0	Parent=Os08t0338200-01
Chr08	irgsp1_rep	CDS	15203506	15203586	.	-	0	Parent=Os08t0338200-01
Chr08	irgsp1_rep	three_prime_UTR	15203206	15203505	.	-	.	Parent=Os08t0338200-01
Chr08	irgsp1_rep	mRNA	15215734	15216416	.	-	.	ID=Os08t0338500-01;Name=Os08t0338500-01;Locus_id=Os08g0338500;Note=Pectinesterase inhibitor domain containing protein.;Transcript_evidence=AK107751 (DDBJ%2C Best hit);ORF_evidence=NP_001148732.1 (RefSeq);GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);NIAS_FLcDNA=002-132-H09;Expression=AK107751;TENOR=Os08t0338500-01;KEGG=Os08t0338500-01
Chr08	irgsp1_rep	five_prime_UTR	15216397	15216416	.	-	.	Parent=Os08t0338500-01
Chr08	irgsp1_rep	CDS	15215803	15216396	.	-	0	Parent=Os08t0338500-01
Chr08	irgsp1_rep	three_prime_UTR	15215734	15215802	.	-	.	Parent=Os08t0338500-01
Chr08	irgsp1_rep	mRNA	15227309	15230791	.	+	.	ID=Os08t0338600-01;Name=Os08t0338600-01;Locus_id=Os08g0338600;Note=Conserved hypothetical protein.;Transcript_evidence=AK109191 (DDBJ%2C Best hit);ORF_evidence=A2YU54 (UniProt);NIAS_FLcDNA=002-156-B04;TENOR=Os08t0338600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	15227309	15227310	.	+	.	Parent=Os08t0338600-01
Chr08	irgsp1_rep	CDS	15227311	15227697	.	+	0	Parent=Os08t0338600-01
Chr08	irgsp1_rep	CDS	15229829	15229972	.	+	0	Parent=Os08t0338600-01
Chr08	irgsp1_rep	CDS	15230421	15230609	.	+	0	Parent=Os08t0338600-01
Chr08	irgsp1_rep	three_prime_UTR	15230610	15230791	.	+	.	Parent=Os08t0338600-01
Chr08	irgsp1_rep	mRNA	15232911	15236363	.	-	.	ID=Os08t0338700-01;Name=Os08t0338700-01;Locus_id=Os08g0338700;Note=Similar to Chaperone GrpE type 2.;Transcript_evidence=AK059052 (DDBJ%2C Best hit),AK099022 (DDBJ%2C Best hit);ORF_evidence=B8B9V2 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: adenyl-nucleotide exchange factor activity (GO:0000774),Molecular Function: protein homodimerization activity (GO:0042803),Molecular Function: chaperone binding (GO:0051087);InterPro=GrpE nucleotide exchange factor (IPR000740),GrpE nucleotide exchange factor%2C head (IPR009012),GrpE nucleotide exchange factor%2C coiled-coil (IPR013805);NIAS_FLcDNA=001-021-E11,J013123N05;TENOR=Os08t0338700-01
Chr08	irgsp1_rep	five_prime_UTR	15236251	15236363	.	-	.	Parent=Os08t0338700-01
Chr08	irgsp1_rep	CDS	15236107	15236250	.	-	0	Parent=Os08t0338700-01
Chr08	irgsp1_rep	CDS	15235170	15235365	.	-	0	Parent=Os08t0338700-01
Chr08	irgsp1_rep	CDS	15234907	15235097	.	-	2	Parent=Os08t0338700-01
Chr08	irgsp1_rep	CDS	15234658	15234825	.	-	0	Parent=Os08t0338700-01
Chr08	irgsp1_rep	CDS	15234317	15234445	.	-	0	Parent=Os08t0338700-01
Chr08	irgsp1_rep	CDS	15233304	15233411	.	-	0	Parent=Os08t0338700-01
Chr08	irgsp1_rep	three_prime_UTR	15232911	15233303	.	-	.	Parent=Os08t0338700-01
Chr08	irgsp1_rep	mRNA	15256031	15267417	.	-	.	ID=Os08t0338900-01;Name=Os08t0338900-01;Locus_id=Os08g0338900;Note=Similar to enhancer of polycomb-like protein101.;Transcript_evidence=AK073476 (DDBJ%2C Best hit);ORF_evidence=NP_001105080.1 (RefSeq);InterPro=Enhancer of polycomb-like%2C N-terminal (IPR019542);NIAS_FLcDNA=J033046G02;TENOR=Os08t0338900-01
Chr08	irgsp1_rep	five_prime_UTR	15267096	15267417	.	-	.	Parent=Os08t0338900-01
Chr08	irgsp1_rep	CDS	15266934	15267095	.	-	0	Parent=Os08t0338900-01
Chr08	irgsp1_rep	CDS	15266013	15266142	.	-	0	Parent=Os08t0338900-01
Chr08	irgsp1_rep	CDS	15265818	15265920	.	-	2	Parent=Os08t0338900-01
Chr08	irgsp1_rep	CDS	15265355	15265478	.	-	1	Parent=Os08t0338900-01
Chr08	irgsp1_rep	CDS	15263728	15263793	.	-	0	Parent=Os08t0338900-01
Chr08	irgsp1_rep	CDS	15263461	15263499	.	-	0	Parent=Os08t0338900-01
Chr08	irgsp1_rep	CDS	15261429	15261509	.	-	0	Parent=Os08t0338900-01
Chr08	irgsp1_rep	CDS	15261251	15261298	.	-	0	Parent=Os08t0338900-01
Chr08	irgsp1_rep	CDS	15260087	15260137	.	-	0	Parent=Os08t0338900-01
Chr08	irgsp1_rep	CDS	15259946	15260014	.	-	0	Parent=Os08t0338900-01
Chr08	irgsp1_rep	CDS	15258512	15258748	.	-	0	Parent=Os08t0338900-01
Chr08	irgsp1_rep	CDS	15256603	15256854	.	-	0	Parent=Os08t0338900-01
Chr08	irgsp1_rep	three_prime_UTR	15256031	15256602	.	-	.	Parent=Os08t0338900-01
Chr08	irgsp1_rep	mRNA	15256031	15267393	.	-	.	ID=Os08t0338900-02;Name=Os08t0338900-02;Locus_id=Os08g0338900;Note=Similar to enhancer of polycomb-like protein101.;Transcript_evidence=AK110998 (DDBJ%2C Best hit);ORF_evidence=NP_001105080.1 (RefSeq);InterPro=Enhancer of polycomb-like%2C N-terminal (IPR019542);NIAS_FLcDNA=002-174-E08;TENOR=Os08t0338900-02
Chr08	irgsp1_rep	five_prime_UTR	15267096	15267393	.	-	.	Parent=Os08t0338900-02
Chr08	irgsp1_rep	CDS	15266934	15267095	.	-	0	Parent=Os08t0338900-02
Chr08	irgsp1_rep	CDS	15266013	15266142	.	-	0	Parent=Os08t0338900-02
Chr08	irgsp1_rep	CDS	15265818	15265920	.	-	2	Parent=Os08t0338900-02
Chr08	irgsp1_rep	CDS	15265355	15265478	.	-	1	Parent=Os08t0338900-02
Chr08	irgsp1_rep	CDS	15263728	15263793	.	-	0	Parent=Os08t0338900-02
Chr08	irgsp1_rep	CDS	15263461	15263499	.	-	0	Parent=Os08t0338900-02
Chr08	irgsp1_rep	CDS	15261429	15261509	.	-	0	Parent=Os08t0338900-02
Chr08	irgsp1_rep	CDS	15261251	15261298	.	-	0	Parent=Os08t0338900-02
Chr08	irgsp1_rep	CDS	15260087	15260137	.	-	0	Parent=Os08t0338900-02
Chr08	irgsp1_rep	CDS	15259946	15260014	.	-	0	Parent=Os08t0338900-02
Chr08	irgsp1_rep	CDS	15258512	15258748	.	-	0	Parent=Os08t0338900-02
Chr08	irgsp1_rep	CDS	15256603	15256854	.	-	0	Parent=Os08t0338900-02
Chr08	irgsp1_rep	three_prime_UTR	15256031	15256602	.	-	.	Parent=Os08t0338900-02
Chr08	irgsp1_rep	mRNA	15273554	15277688	.	+	.	ID=Os08t0339200-01;Name=Os08t0339200-01;Locus_id=Os08g0339200;Note=Uncharacterized conserved protein UCP016210 domain containing protein.;Transcript_evidence=AK073244 (DDBJ%2C Best hit);ORF_evidence=B6TBC4 (UniProt);GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=D-aminoacyl-tRNA deacylase (IPR007508),D-Tyr-tRNATyr deacylase (IPR018033);NIAS_FLcDNA=J033001O09;Expression=AK073244;TENOR=Os08t0339200-01;KEGG=Os08t0339200-01
Chr08	irgsp1_rep	five_prime_UTR	15273554	15273641	.	+	.	Parent=Os08t0339200-01
Chr08	irgsp1_rep	CDS	15273642	15273743	.	+	0	Parent=Os08t0339200-01
Chr08	irgsp1_rep	CDS	15273814	15274146	.	+	0	Parent=Os08t0339200-01
Chr08	irgsp1_rep	CDS	15274262	15274325	.	+	0	Parent=Os08t0339200-01
Chr08	irgsp1_rep	CDS	15275166	15275218	.	+	2	Parent=Os08t0339200-01
Chr08	irgsp1_rep	CDS	15275490	15275545	.	+	0	Parent=Os08t0339200-01
Chr08	irgsp1_rep	CDS	15276228	15276296	.	+	1	Parent=Os08t0339200-01
Chr08	irgsp1_rep	CDS	15276429	15276614	.	+	1	Parent=Os08t0339200-01
Chr08	irgsp1_rep	CDS	15277483	15277570	.	+	1	Parent=Os08t0339200-01
Chr08	irgsp1_rep	three_prime_UTR	15277571	15277688	.	+	.	Parent=Os08t0339200-01
Chr08	irgsp1_rep	mRNA	15331172	15334947	.	+	.	ID=Os08t0340601-00;Name=Os08t0340601-00;Locus_id=Os08g0340601;Note=Hypothetical protein.;Transcript_evidence=BT039323 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0340601-00
Chr08	irgsp1_rep	five_prime_UTR	15331172	15331374	.	+	.	Parent=Os08t0340601-00
Chr08	irgsp1_rep	five_prime_UTR	15334511	15334613	.	+	.	Parent=Os08t0340601-00
Chr08	irgsp1_rep	CDS	15334614	15334947	.	+	0	Parent=Os08t0340601-00
Chr08	irgsp1_rep	mRNA	15340000	15342619	.	+	.	ID=Os08t0340700-01;Name=Os08t0340700-01;Locus_id=Os08g0340700;Note=Non-protein coding transcript.;Transcript_evidence=AK072607 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023132L19;TENOR=Os08t0340700-01
Chr08	irgsp1_rep	exon	15340000	15342619	.	+	.	Parent=Os08t0340700-01
Chr08	irgsp1_rep	mRNA	15354219	15356884	.	+	.	ID=Os08t0340900-01;Name=Os08t0340900-01;Locus_id=Os08g0340900;Oryzabase Gene Symbol Synonym(s)=PPR;Oryzabase Gene Name Synonym(s)=Pentatricopeptide repeat (PPR) protein;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK068279 (DDBJ%2C Best hit);ORF_evidence=F2DHI6 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013145H04;Oryzabase=22511;Expression=AK068279;TENOR=Os08t0340900-01;KEGG=Os08t0340900-01
Chr08	irgsp1_rep	five_prime_UTR	15354219	15354386	.	+	.	Parent=Os08t0340900-01
Chr08	irgsp1_rep	CDS	15354387	15356846	.	+	0	Parent=Os08t0340900-01
Chr08	irgsp1_rep	three_prime_UTR	15356847	15356884	.	+	.	Parent=Os08t0340900-01
Chr08	irgsp1_rep	mRNA	15391572	15398468	.	+	.	ID=Os08t0341700-01;Name=Os08t0341700-01;Locus_id=Os08g0341700;Oryzabase Gene Symbol Synonym(s)=OsSNDP7%2C SNDP7;Oryzabase Gene Name Synonym(s)=Sec14-nodulin domain-containing protein 7%2C Sec14-nodulin domain protein 7;Note=Similar to Phosphatidylinositol transfer-like protein II.;Transcript_evidence=AK072532 (DDBJ%2C Best hit);ORF_evidence=B6U127 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: intracellular (GO:0005622),Molecular Function: transporter activity (GO:0005215);InterPro=Cellular retinaldehyde binding/alpha-tocopherol transport (IPR001071),Cellular retinaldehyde-binding/triple function%2C C-terminal (IPR001251),Cellular retinaldehyde-binding/triple function%2C N-terminal (IPR008273),Phosphatidylinositol transfer protein-like%2C N-terminal (IPR011074);NIAS_FLcDNA=J023127L07;Oryzabase=12291;Expression=AK072532;TENOR=Os08t0341700-01;KEGG=Os08t0341700-01
Chr08	irgsp1_rep	five_prime_UTR	15391572	15391838	.	+	.	Parent=Os08t0341700-01
Chr08	irgsp1_rep	five_prime_UTR	15393564	15393675	.	+	.	Parent=Os08t0341700-01
Chr08	irgsp1_rep	CDS	15393676	15393682	.	+	0	Parent=Os08t0341700-01
Chr08	irgsp1_rep	CDS	15393787	15394105	.	+	2	Parent=Os08t0341700-01
Chr08	irgsp1_rep	CDS	15394264	15394363	.	+	1	Parent=Os08t0341700-01
Chr08	irgsp1_rep	CDS	15394633	15394899	.	+	0	Parent=Os08t0341700-01
Chr08	irgsp1_rep	CDS	15395022	15395099	.	+	0	Parent=Os08t0341700-01
Chr08	irgsp1_rep	CDS	15395173	15395274	.	+	0	Parent=Os08t0341700-01
Chr08	irgsp1_rep	CDS	15395361	15395410	.	+	0	Parent=Os08t0341700-01
Chr08	irgsp1_rep	CDS	15395509	15395608	.	+	1	Parent=Os08t0341700-01
Chr08	irgsp1_rep	CDS	15396019	15396117	.	+	0	Parent=Os08t0341700-01
Chr08	irgsp1_rep	CDS	15396265	15396378	.	+	0	Parent=Os08t0341700-01
Chr08	irgsp1_rep	CDS	15396480	15396654	.	+	0	Parent=Os08t0341700-01
Chr08	irgsp1_rep	CDS	15396968	15397374	.	+	2	Parent=Os08t0341700-01
Chr08	irgsp1_rep	CDS	15397807	15397881	.	+	0	Parent=Os08t0341700-01
Chr08	irgsp1_rep	CDS	15397983	15398003	.	+	0	Parent=Os08t0341700-01
Chr08	irgsp1_rep	three_prime_UTR	15398004	15398468	.	+	.	Parent=Os08t0341700-01
Chr08	irgsp1_rep	mRNA	15391577	15394304	.	+	.	ID=Os08t0341700-02;Name=Os08t0341700-02;Locus_id=Os08g0341700;Oryzabase Gene Symbol Synonym(s)=OsSNDP7%2C SNDP7;Oryzabase Gene Name Synonym(s)=Sec14-nodulin domain-containing protein 7%2C Sec14-nodulin domain protein 7;Note=Similar to predicted protein.;Transcript_evidence=AK120904 (DDBJ%2C Best hit);ORF_evidence=XP_002894519.1 (RefSeq);InterPro=Cellular retinaldehyde-binding/triple function%2C N-terminal (IPR008273),Phosphatidylinositol transfer protein-like%2C N-terminal (IPR011074);NIAS_FLcDNA=J023030P06;Oryzabase=12291;TENOR=Os08t0341700-02
Chr08	irgsp1_rep	five_prime_UTR	15391577	15391838	.	+	.	Parent=Os08t0341700-02
Chr08	irgsp1_rep	five_prime_UTR	15393564	15393675	.	+	.	Parent=Os08t0341700-02
Chr08	irgsp1_rep	CDS	15393676	15393682	.	+	0	Parent=Os08t0341700-02
Chr08	irgsp1_rep	CDS	15393787	15394105	.	+	2	Parent=Os08t0341700-02
Chr08	irgsp1_rep	CDS	15394264	15394304	.	+	1	Parent=Os08t0341700-02
Chr08	irgsp1_rep	mRNA	15393785	15398149	.	-	.	ID=Os08t0342000-00;Name=Os08t0342000-00;Locus_id=Os08g0342000;Note=Non-protein coding transcript.;Transcript_evidence=tplb0036h18 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os08t0342000-00
Chr08	irgsp1_rep	exon	15397979	15398149	.	-	.	Parent=Os08t0342000-00
Chr08	irgsp1_rep	exon	15397785	15397875	.	-	.	Parent=Os08t0342000-00
Chr08	irgsp1_rep	exon	15396881	15397351	.	-	.	Parent=Os08t0342000-00
Chr08	irgsp1_rep	exon	15396480	15396771	.	-	.	Parent=Os08t0342000-00
Chr08	irgsp1_rep	exon	15396256	15396378	.	-	.	Parent=Os08t0342000-00
Chr08	irgsp1_rep	exon	15396020	15396108	.	-	.	Parent=Os08t0342000-00
Chr08	irgsp1_rep	exon	15395514	15395609	.	-	.	Parent=Os08t0342000-00
Chr08	irgsp1_rep	exon	15395372	15395415	.	-	.	Parent=Os08t0342000-00
Chr08	irgsp1_rep	exon	15395169	15395287	.	-	.	Parent=Os08t0342000-00
Chr08	irgsp1_rep	exon	15394636	15395094	.	-	.	Parent=Os08t0342000-00
Chr08	irgsp1_rep	exon	15394262	15394369	.	-	.	Parent=Os08t0342000-00
Chr08	irgsp1_rep	exon	15393785	15394103	.	-	.	Parent=Os08t0342000-00
Chr08	irgsp1_rep	mRNA	15431639	15435283	.	-	.	ID=Os08t0342300-01;Name=Os08t0342300-01;Locus_id=Os08g0342300;RAP-DB Gene Symbol Synonym(s)=BRL3%2C OsBRL3;RAP-DB Gene Name Synonym(s)=BRI1 LIKE 3%2C BRI1-like receptor kinase 3;CGSNL Gene Symbol=BRL3;CGSNL Gene Name=BRI1 LIKE 3;Oryzabase Gene Symbol Synonym(s)=OsBRL3;Oryzabase Gene Name Synonym(s)=BRI1-like receptor kinase 3;Note=BR receptor kinase%2C Brassinosteroid (BR) perception in the root;Transcript_evidence=AP004553 (BAD01717);ORF_evidence=Q6ZCZ2;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Concanavalin A-like lectin/glucanase domain (IPR013320),Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine/threonine/dual specificity protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat (IPR001611),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);Manual Curation=November 17%2C 2009;Literature_PMID=16407447;Oryzabase=7387;TENOR=Os08t0342300-00
Chr08	irgsp1_rep	CDS	15431639	15435283	.	-	0	Parent=Os08t0342300-01
Chr08	irgsp1_rep	mRNA	15441219	15450607	.	-	.	ID=Os08t0342400-01;Name=Os08t0342400-01;Locus_id=Os08g0342400;Note=Similar to aspartate kinase-homoserine dehydrogenase.;Transcript_evidence=AK066783 (DDBJ%2C Best hit);ORF_evidence=NP_001105325.1 (RefSeq);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: metabolic process (GO:0008152),Biological Process: cellular amino acid biosynthetic process (GO:0008652),Biological Process: aspartate family amino acid biosynthetic process (GO:0009067),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aspartate kinase activity (GO:0004072),Molecular Function: homoserine dehydrogenase activity (GO:0004412),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: amino acid binding (GO:0016597),Molecular Function: NADP binding (GO:0050661);InterPro=Aspartate/glutamate/uridylate kinase (IPR001048),Aspartate kinase domain (IPR001341),Homoserine dehydrogenase%2C catalytic (IPR001342),Amino acid-binding ACT (IPR002912),Aspartate/homoserine dehydrogenase%2C NAD-binding (IPR005106),Bifunctional aspartokinase/homoserine dehydrogenase I (IPR011147),NAD(P)-binding domain (IPR016040),Aspartate kinase%2C conserved site (IPR018042),Homoserine dehydrogenase%2C conserved site (IPR019811);NIAS_FLcDNA=J013075O09;Expression=AK066783;TENOR=Os08t0342400-01;KEGG=Os08t0342400-01 (EC:1.1.1.3%2C EC:2.7.2.4)
Chr08	irgsp1_rep	five_prime_UTR	15450562	15450607	.	-	.	Parent=Os08t0342400-01
Chr08	irgsp1_rep	CDS	15450464	15450561	.	-	0	Parent=Os08t0342400-01
Chr08	irgsp1_rep	CDS	15450147	15450212	.	-	1	Parent=Os08t0342400-01
Chr08	irgsp1_rep	CDS	15449624	15449688	.	-	1	Parent=Os08t0342400-01
Chr08	irgsp1_rep	CDS	15448826	15449200	.	-	2	Parent=Os08t0342400-01
Chr08	irgsp1_rep	CDS	15448520	15448608	.	-	2	Parent=Os08t0342400-01
Chr08	irgsp1_rep	CDS	15447715	15448018	.	-	0	Parent=Os08t0342400-01
Chr08	irgsp1_rep	CDS	15446548	15446600	.	-	2	Parent=Os08t0342400-01
Chr08	irgsp1_rep	CDS	15446032	15446237	.	-	0	Parent=Os08t0342400-01
Chr08	irgsp1_rep	CDS	15445666	15445753	.	-	1	Parent=Os08t0342400-01
Chr08	irgsp1_rep	CDS	15445479	15445592	.	-	0	Parent=Os08t0342400-01
Chr08	irgsp1_rep	CDS	15444390	15444488	.	-	0	Parent=Os08t0342400-01
Chr08	irgsp1_rep	CDS	15444109	15444303	.	-	0	Parent=Os08t0342400-01
Chr08	irgsp1_rep	CDS	15443127	15443209	.	-	0	Parent=Os08t0342400-01
Chr08	irgsp1_rep	CDS	15442259	15442484	.	-	1	Parent=Os08t0342400-01
Chr08	irgsp1_rep	CDS	15441843	15441988	.	-	0	Parent=Os08t0342400-01
Chr08	irgsp1_rep	CDS	15441535	15441688	.	-	1	Parent=Os08t0342400-01
Chr08	irgsp1_rep	three_prime_UTR	15441219	15441534	.	-	.	Parent=Os08t0342400-01
Chr08	irgsp1_rep	mRNA	15438856	15450574	.	-	.	ID=Os08t0342400-02;Name=Os08t0342400-02;Locus_id=Os08g0342400;Note=Similar to Bifunctional aspartokinase/homoserine dehydrogenase 1%2C chloroplast precursor (AK-HD 1) (AK-HSDH 1) [Includes: Aspartokinase (EC 2.7.2.4)%3B Homoserine dehydrogenase (EC 1.1.1.3)].;Transcript_evidence=AK287424 (DDBJ%2C Best hit);ORF_evidence=NP_001105325.1 (RefSeq);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: metabolic process (GO:0008152),Biological Process: cellular amino acid biosynthetic process (GO:0008652),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aspartate kinase activity (GO:0004072),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: amino acid binding (GO:0016597),Molecular Function: NADP binding (GO:0050661);InterPro=Aspartate/glutamate/uridylate kinase (IPR001048),Aspartate kinase domain (IPR001341),Homoserine dehydrogenase%2C catalytic (IPR001342),Amino acid-binding ACT (IPR002912),Aspartate/homoserine dehydrogenase%2C NAD-binding (IPR005106),NAD(P)-binding domain (IPR016040),Aspartate kinase%2C conserved site (IPR018042),Homoserine dehydrogenase%2C conserved site (IPR019811);NIAS_FLcDNA=J043006K04;TENOR=Os08t0342400-02;KEGG=Os08t0342400-02 (EC:1.1.1.3%2C EC:2.7.2.4)
Chr08	irgsp1_rep	five_prime_UTR	15450562	15450574	.	-	.	Parent=Os08t0342400-02
Chr08	irgsp1_rep	CDS	15450464	15450561	.	-	0	Parent=Os08t0342400-02
Chr08	irgsp1_rep	CDS	15450147	15450212	.	-	1	Parent=Os08t0342400-02
Chr08	irgsp1_rep	CDS	15449624	15449688	.	-	1	Parent=Os08t0342400-02
Chr08	irgsp1_rep	CDS	15448826	15449200	.	-	2	Parent=Os08t0342400-02
Chr08	irgsp1_rep	CDS	15448520	15448608	.	-	2	Parent=Os08t0342400-02
Chr08	irgsp1_rep	CDS	15447715	15448018	.	-	0	Parent=Os08t0342400-02
Chr08	irgsp1_rep	CDS	15446548	15446600	.	-	2	Parent=Os08t0342400-02
Chr08	irgsp1_rep	CDS	15446032	15446237	.	-	0	Parent=Os08t0342400-02
Chr08	irgsp1_rep	CDS	15445666	15445753	.	-	1	Parent=Os08t0342400-02
Chr08	irgsp1_rep	CDS	15445479	15445592	.	-	0	Parent=Os08t0342400-02
Chr08	irgsp1_rep	CDS	15444390	15444488	.	-	0	Parent=Os08t0342400-02
Chr08	irgsp1_rep	CDS	15444109	15444303	.	-	0	Parent=Os08t0342400-02
Chr08	irgsp1_rep	CDS	15443127	15443209	.	-	0	Parent=Os08t0342400-02
Chr08	irgsp1_rep	CDS	15442259	15442484	.	-	1	Parent=Os08t0342400-02
Chr08	irgsp1_rep	CDS	15441843	15441988	.	-	0	Parent=Os08t0342400-02
Chr08	irgsp1_rep	CDS	15441553	15441688	.	-	1	Parent=Os08t0342400-02
Chr08	irgsp1_rep	CDS	15440410	15440493	.	-	0	Parent=Os08t0342400-02
Chr08	irgsp1_rep	CDS	15440249	15440341	.	-	0	Parent=Os08t0342400-02
Chr08	irgsp1_rep	CDS	15439666	15439911	.	-	0	Parent=Os08t0342400-02
Chr08	irgsp1_rep	three_prime_UTR	15438856	15439665	.	-	.	Parent=Os08t0342400-02
Chr08	irgsp1_rep	mRNA	15439484	15448955	.	-	.	ID=Os08t0342400-03;Name=Os08t0342400-03;Locus_id=Os08g0342400;Note=Similar to Bifunctional aspartokinase/homoserine dehydrogenase 1%2C chloroplast precursor (AK-HD 1) (AK-HSDH 1) [Includes: Aspartokinase (EC 2.7.2.4)%3B Homoserine dehydrogenase (EC 1.1.1.3)].;Transcript_evidence=AK073790 (DDBJ%2C Best hit);ORF_evidence=NP_001105325.1 (RefSeq);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: metabolic process (GO:0008152),Biological Process: cellular amino acid biosynthetic process (GO:0008652),Biological Process: aspartate family amino acid biosynthetic process (GO:0009067),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aspartate kinase activity (GO:0004072),Molecular Function: homoserine dehydrogenase activity (GO:0004412),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: amino acid binding (GO:0016597),Molecular Function: NADP binding (GO:0050661);InterPro=Aspartate/glutamate/uridylate kinase (IPR001048),Aspartate kinase domain (IPR001341),Homoserine dehydrogenase%2C catalytic (IPR001342),Amino acid-binding ACT (IPR002912),Aspartate/homoserine dehydrogenase%2C NAD-binding (IPR005106),Bifunctional aspartokinase/homoserine dehydrogenase I (IPR011147),NAD(P)-binding domain (IPR016040),Homoserine dehydrogenase%2C conserved site (IPR019811);NIAS_FLcDNA=J033067A07;Expression=AK073790;TENOR=Os08t0342400-03;KEGG=Os08t0342400-03 (EC:1.1.1.3%2C EC:2.7.2.4)
Chr08	irgsp1_rep	CDS	15448826	15448955	.	-	0	Parent=Os08t0342400-03
Chr08	irgsp1_rep	CDS	15448520	15448608	.	-	2	Parent=Os08t0342400-03
Chr08	irgsp1_rep	CDS	15447715	15448018	.	-	0	Parent=Os08t0342400-03
Chr08	irgsp1_rep	CDS	15446548	15446600	.	-	2	Parent=Os08t0342400-03
Chr08	irgsp1_rep	CDS	15446032	15446237	.	-	0	Parent=Os08t0342400-03
Chr08	irgsp1_rep	CDS	15445666	15445753	.	-	1	Parent=Os08t0342400-03
Chr08	irgsp1_rep	CDS	15445479	15445592	.	-	0	Parent=Os08t0342400-03
Chr08	irgsp1_rep	CDS	15444390	15444488	.	-	0	Parent=Os08t0342400-03
Chr08	irgsp1_rep	CDS	15444109	15444303	.	-	0	Parent=Os08t0342400-03
Chr08	irgsp1_rep	CDS	15443127	15443209	.	-	0	Parent=Os08t0342400-03
Chr08	irgsp1_rep	CDS	15442259	15442484	.	-	1	Parent=Os08t0342400-03
Chr08	irgsp1_rep	CDS	15441843	15441988	.	-	0	Parent=Os08t0342400-03
Chr08	irgsp1_rep	CDS	15441553	15441688	.	-	1	Parent=Os08t0342400-03
Chr08	irgsp1_rep	CDS	15440410	15440493	.	-	0	Parent=Os08t0342400-03
Chr08	irgsp1_rep	CDS	15440249	15440341	.	-	0	Parent=Os08t0342400-03
Chr08	irgsp1_rep	CDS	15439666	15439911	.	-	0	Parent=Os08t0342400-03
Chr08	irgsp1_rep	three_prime_UTR	15439484	15439665	.	-	.	Parent=Os08t0342400-03
Chr08	irgsp1_rep	mRNA	15476556	15483046	.	+	.	ID=Os08t0343000-01;Name=Os08t0343000-01;Locus_id=Os08g0343000;CGSNL Gene Symbol=RLCK251;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 251;Oryzabase Gene Symbol Synonym(s)=OsRLCK251;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 251;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK068357 (DDBJ%2C Best hit);ORF_evidence=Q6ZB70 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013145A03;Oryzabase=18942;Expression=AK068357;TENOR=Os08t0343000-01;KEGG=Os08t0343000-01
Chr08	irgsp1_rep	five_prime_UTR	15476556	15476572	.	+	.	Parent=Os08t0343000-01
Chr08	irgsp1_rep	CDS	15476573	15477076	.	+	0	Parent=Os08t0343000-01
Chr08	irgsp1_rep	CDS	15477886	15477938	.	+	0	Parent=Os08t0343000-01
Chr08	irgsp1_rep	CDS	15478300	15478391	.	+	1	Parent=Os08t0343000-01
Chr08	irgsp1_rep	CDS	15478757	15478840	.	+	2	Parent=Os08t0343000-01
Chr08	irgsp1_rep	CDS	15479024	15479118	.	+	2	Parent=Os08t0343000-01
Chr08	irgsp1_rep	CDS	15481371	15481587	.	+	0	Parent=Os08t0343000-01
Chr08	irgsp1_rep	CDS	15481707	15481941	.	+	2	Parent=Os08t0343000-01
Chr08	irgsp1_rep	CDS	15482044	15482197	.	+	1	Parent=Os08t0343000-01
Chr08	irgsp1_rep	CDS	15482442	15482783	.	+	0	Parent=Os08t0343000-01
Chr08	irgsp1_rep	three_prime_UTR	15482784	15483046	.	+	.	Parent=Os08t0343000-01
Chr08	irgsp1_rep	mRNA	15476596	15483069	.	+	.	ID=Os08t0343000-02;Name=Os08t0343000-02;Locus_id=Os08g0343000;CGSNL Gene Symbol=RLCK251;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 251;Oryzabase Gene Symbol Synonym(s)=OsRLCK251;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 251;Note=Hypothetical conserved gene.;Transcript_evidence=AK099236 (DDBJ%2C Best hit);ORF_evidence=Q6ZB70 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013106P03;Oryzabase=18942;Expression=AK099236;TENOR=Os08t0343000-02;KEGG=Os08t0343000-02
Chr08	irgsp1_rep	five_prime_UTR	15476596	15476611	.	+	.	Parent=Os08t0343000-02
Chr08	irgsp1_rep	CDS	15476612	15477076	.	+	0	Parent=Os08t0343000-02
Chr08	irgsp1_rep	CDS	15477886	15477938	.	+	0	Parent=Os08t0343000-02
Chr08	irgsp1_rep	CDS	15478300	15478391	.	+	1	Parent=Os08t0343000-02
Chr08	irgsp1_rep	CDS	15478757	15478840	.	+	2	Parent=Os08t0343000-02
Chr08	irgsp1_rep	CDS	15479024	15479118	.	+	2	Parent=Os08t0343000-02
Chr08	irgsp1_rep	CDS	15481371	15481587	.	+	0	Parent=Os08t0343000-02
Chr08	irgsp1_rep	CDS	15481707	15481941	.	+	2	Parent=Os08t0343000-02
Chr08	irgsp1_rep	CDS	15482044	15482197	.	+	1	Parent=Os08t0343000-02
Chr08	irgsp1_rep	CDS	15482442	15482783	.	+	0	Parent=Os08t0343000-02
Chr08	irgsp1_rep	three_prime_UTR	15482784	15483069	.	+	.	Parent=Os08t0343000-02
Chr08	irgsp1_rep	mRNA	15494288	15501842	.	+	.	ID=Os08t0343300-01;Name=Os08t0343300-01;Locus_id=Os08g0343300;CGSNL Gene Symbol=DLN208;CGSNL Gene Name=DLN REPRESSOR 208;Oryzabase Gene Symbol Synonym(s)=OsDLN208;Oryzabase Gene Name Synonym(s)=DLN repressor 208%2C DLN motif protein 208;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK067775 (DDBJ%2C Best hit);ORF_evidence=XP_002889449.1 (RefSeq);GO=Biological Process: transcription initiation from RNA polymerase II promoter (GO:0006367),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Transcription factor TFIIE%2C alpha subunit (IPR002853),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Transcription factor TFE/TFIIEalpha HTH domain (IPR017919),TFIIEalpha/SarR/Rpc3 HTH domain (IPR024550);NIAS_FLcDNA=J013118K08;Oryzabase=23227;Expression=AK067775;TENOR=Os08t0343300-01;KEGG=Os08t0343300-01
Chr08	irgsp1_rep	five_prime_UTR	15494288	15494443	.	+	.	Parent=Os08t0343300-01
Chr08	irgsp1_rep	CDS	15494444	15494469	.	+	0	Parent=Os08t0343300-01
Chr08	irgsp1_rep	CDS	15494611	15494733	.	+	1	Parent=Os08t0343300-01
Chr08	irgsp1_rep	CDS	15495519	15495639	.	+	1	Parent=Os08t0343300-01
Chr08	irgsp1_rep	CDS	15495814	15495942	.	+	0	Parent=Os08t0343300-01
Chr08	irgsp1_rep	CDS	15497196	15497305	.	+	0	Parent=Os08t0343300-01
Chr08	irgsp1_rep	CDS	15497381	15497564	.	+	1	Parent=Os08t0343300-01
Chr08	irgsp1_rep	CDS	15498397	15498588	.	+	0	Parent=Os08t0343300-01
Chr08	irgsp1_rep	CDS	15499432	15499653	.	+	0	Parent=Os08t0343300-01
Chr08	irgsp1_rep	CDS	15499743	15499929	.	+	0	Parent=Os08t0343300-01
Chr08	irgsp1_rep	CDS	15501251	15501345	.	+	2	Parent=Os08t0343300-01
Chr08	irgsp1_rep	three_prime_UTR	15501346	15501842	.	+	.	Parent=Os08t0343300-01
Chr08	irgsp1_rep	mRNA	15508778	15509034	.	-	.	ID=Os08t0343550-00;Name=Os08t0343550-00;Locus_id=Os08g0343550;Note=Similar to ER6 protein.;Transcript_evidence=FP095444 (DDBJ);ORF_evidence=NP_001148900.1 (RefSeq);InterPro=Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);TENOR=Os08t0343550-00
Chr08	irgsp1_rep	CDS	15508888	15509034	.	-	0	Parent=Os08t0343550-00
Chr08	irgsp1_rep	three_prime_UTR	15508778	15508887	.	-	.	Parent=Os08t0343550-00
Chr08	irgsp1_rep	mRNA	15510426	15512119	.	-	.	ID=Os08t0343600-00;Name=Os08t0343600-00;Locus_id=Os08g0343600;Note=Hypothetical conserved gene.;Transcript_evidence=BT033254 (DDBJ);ORF_evidence=NP_001061595.2 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=FAD linked oxidase%2C N-terminal (IPR006094),Berberine/berberine-like (IPR012951),FAD-binding%2C type 2 (IPR016166),FAD-linked oxidase%2C FAD-binding%2C subdomain 2 (IPR016168);TENOR=Os08t0343600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	15512037	15512119	.	-	.	Parent=Os08t0343600-00
Chr08	irgsp1_rep	CDS	15510426	15512036	.	-	0	Parent=Os08t0343600-00
Chr08	irgsp1_rep	mRNA	15510607	15512106	.	+	.	ID=Os08t0343850-00;Name=Os08t0343850-00;Locus_id=Os08g0343850;Note=Hypothetical protein.;Transcript_evidence=EU957461 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0343850-00
Chr08	irgsp1_rep	five_prime_UTR	15510607	15510950	.	+	.	Parent=Os08t0343850-00
Chr08	irgsp1_rep	five_prime_UTR	15511089	15511517	.	+	.	Parent=Os08t0343850-00
Chr08	irgsp1_rep	CDS	15511518	15512078	.	+	0	Parent=Os08t0343850-00
Chr08	irgsp1_rep	three_prime_UTR	15512079	15512106	.	+	.	Parent=Os08t0343850-00
Chr08	irgsp1_rep	mRNA	15554139	15559145	.	+	.	ID=Os08t0344100-01;Name=Os08t0344100-01;Locus_id=Os08g0344100;RAP-DB Gene Symbol Synonym(s)=HDA705;RAP-DB Gene Name Synonym(s)=histone deacetylase 705;Oryzabase Gene Symbol Synonym(s)=HDA705;Oryzabase Gene Name Synonym(s)=histone deacetylase 705;Note=Histone deacetylase%2C Regulation of seed germination%2C Response to ABA and abiotic stresses;Transcript_evidence=AK111861;ORF_evidence=Q6ZB59;GO=Biological Process: histone deacetylation (GO:0016575),Molecular Function: histone deacetylase activity (GO:0004407);InterPro=Histone deacetylase superfamily (IPR000286),Histone deacetylase (IPR003084),Histone deacetylase domain (IPR023801);NIAS_FLcDNA=J033027M14;Manual Curation=June 15%2C 2017;Literature_PMID=26772883;Oryzabase=21033;Expression=AK111861;TENOR=Os08t0344100-01;KEGG=Os08t0344100-01 (EC:3.5.1.98)
Chr08	irgsp1_rep	five_prime_UTR	15554139	15554210	.	+	.	Parent=Os08t0344100-01
Chr08	irgsp1_rep	CDS	15554211	15554753	.	+	0	Parent=Os08t0344100-01
Chr08	irgsp1_rep	CDS	15556756	15557196	.	+	0	Parent=Os08t0344100-01
Chr08	irgsp1_rep	CDS	15557288	15557430	.	+	0	Parent=Os08t0344100-01
Chr08	irgsp1_rep	CDS	15557858	15557948	.	+	1	Parent=Os08t0344100-01
Chr08	irgsp1_rep	CDS	15558033	15558167	.	+	0	Parent=Os08t0344100-01
Chr08	irgsp1_rep	CDS	15558714	15558737	.	+	0	Parent=Os08t0344100-01
Chr08	irgsp1_rep	three_prime_UTR	15558738	15559145	.	+	.	Parent=Os08t0344100-01
Chr08	irgsp1_rep	mRNA	15554256	15557398	.	-	.	ID=Os08t0344200-00;Name=Os08t0344200-00;Locus_id=Os08g0344200;Note=Non-protein coding transcript.;Transcript_evidence=tplb0043n03 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os08t0344200-00
Chr08	irgsp1_rep	exon	15557290	15557398	.	-	.	Parent=Os08t0344200-00
Chr08	irgsp1_rep	exon	15556753	15557198	.	-	.	Parent=Os08t0344200-00
Chr08	irgsp1_rep	exon	15554256	15554750	.	-	.	Parent=Os08t0344200-00
Chr08	irgsp1_rep	mRNA	15571222	15574549	.	+	.	ID=Os08t0344300-01;Name=Os08t0344300-01;Locus_id=Os08g0344300;Note=Uncharacterised protein family UPF0041 domain containing protein.;Transcript_evidence=AK121224 (DDBJ%2C Best hit);ORF_evidence=B4FWA7 (UniProt);InterPro=Uncharacterised protein family UPF0041 (IPR005336);NIAS_FLcDNA=J023090N19;Expression=AK121224;TENOR=Os08t0344300-01;KEGG=Os08t0344300-01
Chr08	irgsp1_rep	five_prime_UTR	15571222	15571341	.	+	.	Parent=Os08t0344300-01
Chr08	irgsp1_rep	five_prime_UTR	15572907	15572956	.	+	.	Parent=Os08t0344300-01
Chr08	irgsp1_rep	CDS	15572957	15573008	.	+	0	Parent=Os08t0344300-01
Chr08	irgsp1_rep	CDS	15573507	15573605	.	+	2	Parent=Os08t0344300-01
Chr08	irgsp1_rep	CDS	15573707	15573759	.	+	2	Parent=Os08t0344300-01
Chr08	irgsp1_rep	CDS	15573937	15574010	.	+	0	Parent=Os08t0344300-01
Chr08	irgsp1_rep	CDS	15574100	15574151	.	+	1	Parent=Os08t0344300-01
Chr08	irgsp1_rep	three_prime_UTR	15574152	15574549	.	+	.	Parent=Os08t0344300-01
Chr08	irgsp1_rep	mRNA	15592259	15599047	.	+	.	ID=Os08t0344600-01;Name=Os08t0344600-01;Locus_id=Os08g0344600;Oryzabase Gene Name Synonym(s)=Triose phosphate/phosphate translocator;Note=Similar to Triose phosphate/phosphate translocator%2C non-green plastid%2C chloroplast precursor (CTPT).;Transcript_evidence=AK066618 (DDBJ%2C Best hit);ORF_evidence=Q84QU8 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215);InterPro=Drug/metabolite transporter (IPR000620),Tpt phosphate/phosphoenolpyruvate translocator (IPR004696),Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=J013073L11;Oryzabase=12464;Expression=AK066618;TENOR=Os08t0344600-01;KEGG=Os08t0344600-01
Chr08	irgsp1_rep	five_prime_UTR	15592259	15592393	.	+	.	Parent=Os08t0344600-01
Chr08	irgsp1_rep	CDS	15592394	15592774	.	+	0	Parent=Os08t0344600-01
Chr08	irgsp1_rep	CDS	15594088	15594210	.	+	0	Parent=Os08t0344600-01
Chr08	irgsp1_rep	CDS	15594302	15594454	.	+	0	Parent=Os08t0344600-01
Chr08	irgsp1_rep	CDS	15594555	15594640	.	+	0	Parent=Os08t0344600-01
Chr08	irgsp1_rep	CDS	15595569	15595653	.	+	1	Parent=Os08t0344600-01
Chr08	irgsp1_rep	CDS	15595794	15595913	.	+	0	Parent=Os08t0344600-01
Chr08	irgsp1_rep	CDS	15596038	15596106	.	+	0	Parent=Os08t0344600-01
Chr08	irgsp1_rep	CDS	15598561	15598690	.	+	0	Parent=Os08t0344600-01
Chr08	irgsp1_rep	CDS	15598782	15598858	.	+	2	Parent=Os08t0344600-01
Chr08	irgsp1_rep	three_prime_UTR	15598859	15599047	.	+	.	Parent=Os08t0344600-01
Chr08	irgsp1_rep	mRNA	15595818	15599090	.	+	.	ID=Os08t0344600-02;Name=Os08t0344600-02;Locus_id=Os08g0344600;Oryzabase Gene Name Synonym(s)=Triose phosphate/phosphate translocator;Note=Similar to Phosphoenolpyruvate/phosphate translocator.;Transcript_evidence=AK059591 (DDBJ%2C Best hit);ORF_evidence=Q84QU8 (UniProt);InterPro=Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=001-030-D02;Oryzabase=12464;Expression=AK059591;TENOR=Os08t0344600-02;KEGG=Os08t0344600-02
Chr08	irgsp1_rep	CDS	15595818	15595913	.	+	0	Parent=Os08t0344600-02
Chr08	irgsp1_rep	CDS	15596038	15596106	.	+	0	Parent=Os08t0344600-02
Chr08	irgsp1_rep	CDS	15598561	15598690	.	+	0	Parent=Os08t0344600-02
Chr08	irgsp1_rep	CDS	15598782	15598858	.	+	2	Parent=Os08t0344600-02
Chr08	irgsp1_rep	three_prime_UTR	15598859	15599090	.	+	.	Parent=Os08t0344600-02
Chr08	irgsp1_rep	mRNA	15606651	15608842	.	-	.	ID=Os08t0344700-00;Name=Os08t0344700-00;Locus_id=Os08g0344700;Oryzabase Gene Symbol Synonym(s)=Os_F0586;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q84QU7 (UniProt);Oryzabase=17524;TENOR=Os08t0344700-00
Chr08	irgsp1_rep	CDS	15608765	15608842	.	-	0	Parent=Os08t0344700-00
Chr08	irgsp1_rep	CDS	15608270	15608500	.	-	0	Parent=Os08t0344700-00
Chr08	irgsp1_rep	CDS	15607816	15607905	.	-	0	Parent=Os08t0344700-00
Chr08	irgsp1_rep	CDS	15607568	15607717	.	-	0	Parent=Os08t0344700-00
Chr08	irgsp1_rep	CDS	15606651	15606899	.	-	0	Parent=Os08t0344700-00
Chr08	irgsp1_rep	mRNA	15610010	15611929	.	-	.	ID=Os08t0344800-00;Name=Os08t0344800-00;Locus_id=Os08g0344800;Note=Similar to HAT family dimerisation domain containing protein.;Transcript_evidence=AK288170 (DDBJ%2C Secondary hit);ORF_evidence=Q53RM1 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein dimerization activity (GO:0046983);InterPro=HAT dimerisation (IPR008906),Ribonuclease H-like (IPR012337);TENOR=Os08t0344800-00;KEGG=Os08t0344800-00
Chr08	irgsp1_rep	five_prime_UTR	15611928	15611929	.	-	.	Parent=Os08t0344800-00
Chr08	irgsp1_rep	CDS	15611325	15611927	.	-	0	Parent=Os08t0344800-00
Chr08	irgsp1_rep	three_prime_UTR	15610010	15611324	.	-	.	Parent=Os08t0344800-00
Chr08	irgsp1_rep	mRNA	15637759	15641896	.	+	.	ID=Os08t0345400-01;Name=Os08t0345400-01;Locus_id=Os08g0345400;Note=Conserved hypothetical protein.;Transcript_evidence=AK065348 (DDBJ%2C Best hit);ORF_evidence=B8BA25 (UniProt);NIAS_FLcDNA=J013009K02;TENOR=Os08t0345400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	15637759	15637830	.	+	.	Parent=Os08t0345400-01
Chr08	irgsp1_rep	CDS	15637831	15638277	.	+	0	Parent=Os08t0345400-01
Chr08	irgsp1_rep	CDS	15639231	15639376	.	+	0	Parent=Os08t0345400-01
Chr08	irgsp1_rep	CDS	15639974	15640142	.	+	1	Parent=Os08t0345400-01
Chr08	irgsp1_rep	CDS	15640282	15640380	.	+	0	Parent=Os08t0345400-01
Chr08	irgsp1_rep	CDS	15641059	15641141	.	+	0	Parent=Os08t0345400-01
Chr08	irgsp1_rep	CDS	15641270	15641399	.	+	1	Parent=Os08t0345400-01
Chr08	irgsp1_rep	three_prime_UTR	15641400	15641896	.	+	.	Parent=Os08t0345400-01
Chr08	irgsp1_rep	mRNA	15642407	15645945	.	-	.	ID=Os08t0345500-00;Name=Os08t0345500-00;Locus_id=Os08g0345500;CGSNL Gene Symbol=CSLD3;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE D3;Oryzabase Gene Symbol Synonym(s)=OsCSLD3;Note=Similar to Cellulose synthase-like protein D3.;Transcript_evidence=AK375198 (DDBJ);ORF_evidence=Q7EZW6 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);Oryzabase=9014;TENOR=Os08t0345500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	15645941	15645945	.	-	.	Parent=Os08t0345500-00
Chr08	irgsp1_rep	CDS	15642960	15645940	.	-	0	Parent=Os08t0345500-00
Chr08	irgsp1_rep	CDS	15642407	15642866	.	-	1	Parent=Os08t0345500-00
Chr08	irgsp1_rep	mRNA	15658493	15663867	.	+	.	ID=Os08t0345700-01;Name=Os08t0345700-01;Locus_id=Os08g0345700;CGSNL Gene Symbol=PFPA3;CGSNL Gene Name=PYROPHOSPHATE-FRUCTOSE-6-PHOSPHATEPHOSPHOTRANSFERASE ALPHA SUBUNIT 3;Oryzabase Gene Symbol Synonym(s)=OsPFPA3%2C OsPFP1a3%2C PFP1a3;Oryzabase Gene Name Synonym(s)=pyrophosphate-dependent phosphofrucokinase alpha-subunit%2C PFP alpha-subunit%2C pyrophosphate-fructose-6-phosphatephosphotransferase alpha subunit 3%2C PFP-alpha subunit 3%2C catalytic a-subunit 3 of PFP1;Note=Similar to Fructose-6-phosphate 1-phosphotransferase (Fragment).;Transcript_evidence=AK099939 (DDBJ%2C Best hit);ORF_evidence=Q41140 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Cellular Component: 6-phosphofructokinase complex (GO:0005945),Molecular Function: 6-phosphofructokinase activity (GO:0003872),Molecular Function: ATP binding (GO:0005524),Molecular Function: diphosphate-fructose-6-phosphate 1-phosphotransferase activity (GO:0047334);InterPro=Phosphofructokinase domain (IPR000023),Pyrophosphate-dependent phosphofructokinase PfpB (IPR011183),Pyrophosphate-dependent phosphofructokinase%2C alpha-helical (IPR013981);NIAS_FLcDNA=J013120L01;Oryzabase=12049;Expression=AK099939;TENOR=Os08t0345700-01;KEGG=Os08t0345700-01
Chr08	irgsp1_rep	five_prime_UTR	15658493	15658861	.	+	.	Parent=Os08t0345700-01
Chr08	irgsp1_rep	CDS	15658862	15658954	.	+	0	Parent=Os08t0345700-01
Chr08	irgsp1_rep	CDS	15659313	15659473	.	+	0	Parent=Os08t0345700-01
Chr08	irgsp1_rep	CDS	15659580	15659692	.	+	1	Parent=Os08t0345700-01
Chr08	irgsp1_rep	CDS	15659890	15659964	.	+	2	Parent=Os08t0345700-01
Chr08	irgsp1_rep	CDS	15660065	15660178	.	+	2	Parent=Os08t0345700-01
Chr08	irgsp1_rep	CDS	15660419	15660486	.	+	2	Parent=Os08t0345700-01
Chr08	irgsp1_rep	CDS	15660578	15660661	.	+	0	Parent=Os08t0345700-01
Chr08	irgsp1_rep	CDS	15660787	15660840	.	+	0	Parent=Os08t0345700-01
Chr08	irgsp1_rep	CDS	15660926	15661006	.	+	0	Parent=Os08t0345700-01
Chr08	irgsp1_rep	CDS	15661086	15661179	.	+	0	Parent=Os08t0345700-01
Chr08	irgsp1_rep	CDS	15661335	15661408	.	+	2	Parent=Os08t0345700-01
Chr08	irgsp1_rep	CDS	15661490	15661600	.	+	0	Parent=Os08t0345700-01
Chr08	irgsp1_rep	CDS	15661685	15661729	.	+	0	Parent=Os08t0345700-01
Chr08	irgsp1_rep	CDS	15661814	15661870	.	+	0	Parent=Os08t0345700-01
Chr08	irgsp1_rep	CDS	15661953	15662057	.	+	0	Parent=Os08t0345700-01
Chr08	irgsp1_rep	CDS	15662131	15662247	.	+	0	Parent=Os08t0345700-01
Chr08	irgsp1_rep	CDS	15662543	15662646	.	+	0	Parent=Os08t0345700-01
Chr08	irgsp1_rep	CDS	15663118	15663283	.	+	1	Parent=Os08t0345700-01
Chr08	irgsp1_rep	CDS	15663391	15663528	.	+	0	Parent=Os08t0345700-01
Chr08	irgsp1_rep	three_prime_UTR	15663529	15663867	.	+	.	Parent=Os08t0345700-01
Chr08	irgsp1_rep	mRNA	15658799	15663699	.	+	.	ID=Os08t0345700-02;Name=Os08t0345700-02;Locus_id=Os08g0345700;CGSNL Gene Symbol=PFPA3;CGSNL Gene Name=PYROPHOSPHATE-FRUCTOSE-6-PHOSPHATEPHOSPHOTRANSFERASE ALPHA SUBUNIT 3;Oryzabase Gene Symbol Synonym(s)=OsPFPA3%2C OsPFP1a3%2C PFP1a3;Oryzabase Gene Name Synonym(s)=pyrophosphate-dependent phosphofrucokinase alpha-subunit%2C PFP alpha-subunit%2C pyrophosphate-fructose-6-phosphatephosphotransferase alpha subunit 3%2C PFP-alpha subunit 3%2C catalytic a-subunit 3 of PFP1;Note=Similar to Fructose-6-phosphate 1-phosphotransferase (Fragment).;Transcript_evidence=AK101073 (DDBJ%2C Best hit);ORF_evidence=Q41140 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Cellular Component: 6-phosphofructokinase complex (GO:0005945),Molecular Function: 6-phosphofructokinase activity (GO:0003872),Molecular Function: ATP binding (GO:0005524),Molecular Function: diphosphate-fructose-6-phosphate 1-phosphotransferase activity (GO:0047334);InterPro=Phosphofructokinase domain (IPR000023),Pyrophosphate-dependent phosphofructokinase PfpB (IPR011183),Pyrophosphate-dependent phosphofructokinase%2C alpha-helical (IPR013981);NIAS_FLcDNA=J033024A16;Oryzabase=12049;Expression=AK101073;TENOR=Os08t0345700-02;KEGG=Os08t0345700-02
Chr08	irgsp1_rep	five_prime_UTR	15658799	15658861	.	+	.	Parent=Os08t0345700-02
Chr08	irgsp1_rep	CDS	15658862	15658954	.	+	0	Parent=Os08t0345700-02
Chr08	irgsp1_rep	CDS	15659313	15659473	.	+	0	Parent=Os08t0345700-02
Chr08	irgsp1_rep	CDS	15659580	15659692	.	+	1	Parent=Os08t0345700-02
Chr08	irgsp1_rep	CDS	15659890	15659964	.	+	2	Parent=Os08t0345700-02
Chr08	irgsp1_rep	CDS	15660065	15660178	.	+	2	Parent=Os08t0345700-02
Chr08	irgsp1_rep	CDS	15660419	15660486	.	+	2	Parent=Os08t0345700-02
Chr08	irgsp1_rep	CDS	15660578	15660661	.	+	0	Parent=Os08t0345700-02
Chr08	irgsp1_rep	CDS	15660787	15660840	.	+	0	Parent=Os08t0345700-02
Chr08	irgsp1_rep	CDS	15660926	15661006	.	+	0	Parent=Os08t0345700-02
Chr08	irgsp1_rep	CDS	15661086	15661179	.	+	0	Parent=Os08t0345700-02
Chr08	irgsp1_rep	CDS	15661335	15661408	.	+	2	Parent=Os08t0345700-02
Chr08	irgsp1_rep	CDS	15661490	15661600	.	+	0	Parent=Os08t0345700-02
Chr08	irgsp1_rep	CDS	15661685	15661729	.	+	0	Parent=Os08t0345700-02
Chr08	irgsp1_rep	CDS	15661814	15661870	.	+	0	Parent=Os08t0345700-02
Chr08	irgsp1_rep	CDS	15661953	15662057	.	+	0	Parent=Os08t0345700-02
Chr08	irgsp1_rep	CDS	15662131	15662247	.	+	0	Parent=Os08t0345700-02
Chr08	irgsp1_rep	CDS	15662543	15662646	.	+	0	Parent=Os08t0345700-02
Chr08	irgsp1_rep	CDS	15663118	15663283	.	+	1	Parent=Os08t0345700-02
Chr08	irgsp1_rep	CDS	15663391	15663528	.	+	0	Parent=Os08t0345700-02
Chr08	irgsp1_rep	three_prime_UTR	15663529	15663699	.	+	.	Parent=Os08t0345700-02
Chr08	irgsp1_rep	mRNA	15666389	15672583	.	-	.	ID=Os08t0345800-01;Name=Os08t0345800-01;Locus_id=Os08g0345800;RAP-DB Gene Symbol Synonym(s)=OsAGPS2b;RAP-DB Gene Name Synonym(s)=ADP-glucose pyrophosphorylase small subunit 2b;CGSNL Gene Symbol=AGPS2;CGSNL Gene Name=ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 2;Oryzabase Gene Symbol Synonym(s)=OsAGPS2a%2C AGPS2A%2C AGPS2B%2C OsAGPS2%2C osagps2%2C APS2%2C APS2a%2C APS2b%2C AGPS2a%2C APGS2b%2C OsAGPS2b%2C AGPP%2C GAS8%2C OsAPS2%2C OsAPS2a%2C OsAPS2b;Oryzabase Gene Name Synonym(s)=sativa ADP-glucose pyrophosphorylase small subunit 2a%2C sativa ADP-glucose pyrophosphorylase small subunit 2%2C ADP-glucose Pyrophosphorylase small subunit 2%2C AGPase small subunit 2%2C ADP-glucose pyrophosphorylase small subunit 2a%2C ADP-glucose pyrophosphorylase 51kD subunit%2C ADP-glucose pyrophosphorylase small unit 2%2C ADP-glucose pyrophosphorylase small subunit 2b;Note=Cytosolic ADP-glucose pyrophosphorylase small subunit 2b%2C Starch synthesis in the middle to late stage of developing endosperm;Transcript_evidence=AK103906;ORF_evidence=P15280-2;GO=Biological Process: glycogen biosynthetic process (GO:0005978),Biological Process: biosynthetic process (GO:0009058),Molecular Function: glucose-1-phosphate adenylyltransferase activity (GO:0008878),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=Nucleotide-diphospho-sugar transferases (IPR029044),Trimeric LpxA-like superfamily (IPR011004),Glucose-1-phosphate adenylyltransferase (IPR011831),Nucleotidyl transferase domain (IPR005835),ADP-glucose pyrophosphorylase%2C conserved site (IPR005836);NIAS_FLcDNA=J033150M21;Manual Curation=July 16%2C 2019;Literature_PMID=17406793;Oryzabase=8257;Expression=AK103906;TENOR=Os08t0345800-01;KEGG=Os08t0345800-01 (EC:2.7.7.27);Subcellular location=cytosol (GO:0005829) [root]
Chr08	irgsp1_rep	five_prime_UTR	15672477	15672583	.	-	.	Parent=Os08t0345800-01
Chr08	irgsp1_rep	CDS	15672336	15672476	.	-	0	Parent=Os08t0345800-01
Chr08	irgsp1_rep	CDS	15669771	15670067	.	-	0	Parent=Os08t0345800-01
Chr08	irgsp1_rep	CDS	15668854	15669123	.	-	0	Parent=Os08t0345800-01
Chr08	irgsp1_rep	CDS	15668558	15668737	.	-	0	Parent=Os08t0345800-01
Chr08	irgsp1_rep	CDS	15668267	15668370	.	-	0	Parent=Os08t0345800-01
Chr08	irgsp1_rep	CDS	15668044	15668155	.	-	1	Parent=Os08t0345800-01
Chr08	irgsp1_rep	CDS	15667823	15667921	.	-	0	Parent=Os08t0345800-01
Chr08	irgsp1_rep	CDS	15667618	15667737	.	-	0	Parent=Os08t0345800-01
Chr08	irgsp1_rep	CDS	15666842	15666958	.	-	0	Parent=Os08t0345800-01
Chr08	irgsp1_rep	three_prime_UTR	15666841	15666841	.	-	.	Parent=Os08t0345800-01
Chr08	irgsp1_rep	three_prime_UTR	15666389	15666585	.	-	.	Parent=Os08t0345800-01
Chr08	irgsp1_rep	mRNA	15666336	15671051	.	-	.	ID=Os08t0345800-02;Name=Os08t0345800-02;Locus_id=Os08g0345800;RAP-DB Gene Symbol Synonym(s)=OsAGPS2a;RAP-DB Gene Name Synonym(s)=ADP-glucose pyrophosphorylase small subunit 2a;CGSNL Gene Symbol=AGPS2;CGSNL Gene Name=ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 2;Oryzabase Gene Symbol Synonym(s)=OsAGPS2a%2C AGPS2A%2C AGPS2B%2C OsAGPS2%2C osagps2%2C APS2%2C APS2a%2C APS2b%2C AGPS2a%2C APGS2b%2C OsAGPS2b%2C AGPP%2C GAS8%2C OsAPS2%2C OsAPS2a%2C OsAPS2b;Oryzabase Gene Name Synonym(s)=sativa ADP-glucose pyrophosphorylase small subunit 2a%2C sativa ADP-glucose pyrophosphorylase small subunit 2%2C ADP-glucose Pyrophosphorylase small subunit 2%2C AGPase small subunit 2%2C ADP-glucose pyrophosphorylase small subunit 2a%2C ADP-glucose pyrophosphorylase 51kD subunit%2C ADP-glucose pyrophosphorylase small unit 2%2C ADP-glucose pyrophosphorylase small subunit 2b;Note=Chloroplastic ADP-glucose pyrophosphorylase small subunit 2a%2C Starch synthesis in the leaf;Transcript_evidence=AK071826;ORF_evidence=P15280;GO=Biological Process: glycogen biosynthetic process (GO:0005978),Biological Process: biosynthetic process (GO:0009058),Molecular Function: glucose-1-phosphate adenylyltransferase activity (GO:0008878),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=Nucleotide-diphospho-sugar transferases (IPR029044),Trimeric LpxA-like superfamily (IPR011004),Glucose-1-phosphate adenylyltransferase (IPR011831),Nucleotidyl transferase domain (IPR005835),ADP-glucose pyrophosphorylase%2C conserved site (IPR005836);NIAS_FLcDNA=J023118H02;Manual Curation=July 16%2C 2019;Literature_PMID=17406793;Oryzabase=8257;Expression=AK071826;TENOR=Os08t0345800-02;Subcellular location=chloroplast (GO:0009507) [leaf]
Chr08	irgsp1_rep	five_prime_UTR	15670920	15671051	.	-	.	Parent=Os08t0345800-02
Chr08	irgsp1_rep	CDS	15670674	15670919	.	-	0	Parent=Os08t0345800-02
Chr08	irgsp1_rep	CDS	15669771	15670067	.	-	0	Parent=Os08t0345800-02
Chr08	irgsp1_rep	CDS	15668854	15669123	.	-	0	Parent=Os08t0345800-02
Chr08	irgsp1_rep	CDS	15668558	15668737	.	-	0	Parent=Os08t0345800-02
Chr08	irgsp1_rep	CDS	15668267	15668370	.	-	0	Parent=Os08t0345800-02
Chr08	irgsp1_rep	CDS	15668044	15668155	.	-	1	Parent=Os08t0345800-02
Chr08	irgsp1_rep	CDS	15667823	15667921	.	-	0	Parent=Os08t0345800-02
Chr08	irgsp1_rep	CDS	15667618	15667737	.	-	0	Parent=Os08t0345800-02
Chr08	irgsp1_rep	CDS	15666842	15666958	.	-	0	Parent=Os08t0345800-02
Chr08	irgsp1_rep	three_prime_UTR	15666841	15666841	.	-	.	Parent=Os08t0345800-02
Chr08	irgsp1_rep	three_prime_UTR	15666336	15666585	.	-	.	Parent=Os08t0345800-02
Chr08	irgsp1_rep	mRNA	15666336	15667915	.	-	.	ID=Os08t0345800-03;Name=Os08t0345800-03;Locus_id=Os08g0345800;CGSNL Gene Symbol=AGPS2;CGSNL Gene Name=ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 2;Oryzabase Gene Symbol Synonym(s)=OsAGPS2a%2C AGPS2A%2C AGPS2B%2C OsAGPS2%2C osagps2%2C APS2%2C APS2a%2C APS2b%2C AGPS2a%2C APGS2b%2C OsAGPS2b%2C AGPP%2C GAS8%2C OsAPS2%2C OsAPS2a%2C OsAPS2b;Oryzabase Gene Name Synonym(s)=sativa ADP-glucose pyrophosphorylase small subunit 2a%2C sativa ADP-glucose pyrophosphorylase small subunit 2%2C ADP-glucose Pyrophosphorylase small subunit 2%2C AGPase small subunit 2%2C ADP-glucose pyrophosphorylase small subunit 2a%2C ADP-glucose pyrophosphorylase 51kD subunit%2C ADP-glucose pyrophosphorylase small unit 2%2C ADP-glucose pyrophosphorylase small subunit 2b;Note=Similar to Isoform 2 of Glucose-1-phosphate adenylyltransferase small subunit%2C chloroplastic/amyloplastic.;Transcript_evidence=AK058246 (DDBJ%2C Best hit);ORF_evidence=D4AIA3 (UniProt);GO=Molecular Function: transferase activity (GO:0016740);InterPro=Trimeric LpxA-like (IPR011004);NIAS_FLcDNA=001-012-A08;Oryzabase=8257;Expression=AK058246;TENOR=Os08t0345800-03;KEGG=Os08t0345800-03 (EC:2.7.7.27)
Chr08	irgsp1_rep	CDS	15667823	15667915	.	-	0	Parent=Os08t0345800-03
Chr08	irgsp1_rep	CDS	15667618	15667737	.	-	0	Parent=Os08t0345800-03
Chr08	irgsp1_rep	CDS	15666842	15666958	.	-	0	Parent=Os08t0345800-03
Chr08	irgsp1_rep	three_prime_UTR	15666841	15666841	.	-	.	Parent=Os08t0345800-03
Chr08	irgsp1_rep	three_prime_UTR	15666336	15666585	.	-	.	Parent=Os08t0345800-03
Chr08	irgsp1_rep	mRNA	15666397	15666960	.	-	.	ID=Os08t0345800-04;Name=Os08t0345800-04;Locus_id=Os08g0345800;CGSNL Gene Symbol=AGPS2;CGSNL Gene Name=ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 2;Oryzabase Gene Symbol Synonym(s)=OsAGPS2a%2C AGPS2A%2C AGPS2B%2C OsAGPS2%2C osagps2%2C APS2%2C APS2a%2C APS2b%2C AGPS2a%2C APGS2b%2C OsAGPS2b%2C AGPP%2C GAS8%2C OsAPS2%2C OsAPS2a%2C OsAPS2b;Oryzabase Gene Name Synonym(s)=sativa ADP-glucose pyrophosphorylase small subunit 2a%2C sativa ADP-glucose pyrophosphorylase small subunit 2%2C ADP-glucose Pyrophosphorylase small subunit 2%2C AGPase small subunit 2%2C ADP-glucose pyrophosphorylase small subunit 2a%2C ADP-glucose pyrophosphorylase 51kD subunit%2C ADP-glucose pyrophosphorylase small unit 2%2C ADP-glucose pyrophosphorylase small subunit 2b;Note=Similar to Isoform 2 of Glucose-1-phosphate adenylyltransferase small subunit%2C chloroplastic/amyloplastic.;Transcript_evidence=AK058551 (DDBJ%2C Best hit);ORF_evidence=Q9M4Z1 (UniProt);NIAS_FLcDNA=001-017-C09;Oryzabase=8257;Expression=AK058551;TENOR=Os08t0345800-04;KEGG=Os08t0345800-04 (EC:2.7.7.27)
Chr08	irgsp1_rep	five_prime_UTR	15666959	15666960	.	-	.	Parent=Os08t0345800-04
Chr08	irgsp1_rep	CDS	15666842	15666958	.	-	0	Parent=Os08t0345800-04
Chr08	irgsp1_rep	three_prime_UTR	15666841	15666841	.	-	.	Parent=Os08t0345800-04
Chr08	irgsp1_rep	three_prime_UTR	15666397	15666585	.	-	.	Parent=Os08t0345800-04
Chr08	irgsp1_rep	mRNA	15666836	15668924	.	+	.	ID=Os08t0346001-00;Name=Os08t0346001-00;Locus_id=Os08g0346001;Note=Hypothetical gene.;Transcript_evidence=BT016913 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0346001-00;KEGG=Os08t0346001-00
Chr08	irgsp1_rep	CDS	15666836	15666943	.	+	0	Parent=Os08t0346001-00
Chr08	irgsp1_rep	CDS	15667600	15667740	.	+	0	Parent=Os08t0346001-00
Chr08	irgsp1_rep	CDS	15667830	15667832	.	+	0	Parent=Os08t0346001-00
Chr08	irgsp1_rep	three_prime_UTR	15667833	15667920	.	+	.	Parent=Os08t0346001-00
Chr08	irgsp1_rep	three_prime_UTR	15668043	15668145	.	+	.	Parent=Os08t0346001-00
Chr08	irgsp1_rep	three_prime_UTR	15668262	15668366	.	+	.	Parent=Os08t0346001-00
Chr08	irgsp1_rep	three_prime_UTR	15668548	15668721	.	+	.	Parent=Os08t0346001-00
Chr08	irgsp1_rep	three_prime_UTR	15668837	15668924	.	+	.	Parent=Os08t0346001-00
Chr08	irgsp1_rep	mRNA	15695538	15703923	.	+	.	ID=Os08t0346400-01;Name=Os08t0346400-01;Locus_id=Os08g0346400;Note=Similar to Phosphate starvation regulator protein (Regulatory protein of P- starvation acclimation response Psr1).;Transcript_evidence=AK103873 (DDBJ%2C Best hit);ORF_evidence=B4FPL5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J033149L11;Expression=AK103873;TENOR=Os08t0346400-01;KEGG=Os08t0346400-01
Chr08	irgsp1_rep	five_prime_UTR	15695538	15695657	.	+	.	Parent=Os08t0346400-01
Chr08	irgsp1_rep	CDS	15695658	15695832	.	+	0	Parent=Os08t0346400-01
Chr08	irgsp1_rep	CDS	15700949	15701025	.	+	2	Parent=Os08t0346400-01
Chr08	irgsp1_rep	CDS	15701096	15701150	.	+	0	Parent=Os08t0346400-01
Chr08	irgsp1_rep	CDS	15702400	15702469	.	+	2	Parent=Os08t0346400-01
Chr08	irgsp1_rep	CDS	15702630	15702699	.	+	1	Parent=Os08t0346400-01
Chr08	irgsp1_rep	CDS	15703289	15703582	.	+	0	Parent=Os08t0346400-01
Chr08	irgsp1_rep	three_prime_UTR	15703583	15703923	.	+	.	Parent=Os08t0346400-01
Chr08	irgsp1_rep	mRNA	15695582	15703940	.	+	.	ID=Os08t0346400-02;Name=Os08t0346400-02;Locus_id=Os08g0346400;Note=Similar to Phosphate starvation regulator protein (Regulatory protein of P- starvation acclimation response Psr1).;Transcript_evidence=AK059644 (DDBJ%2C Best hit);ORF_evidence=B4FPL5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=001-031-B12;Expression=AK059644;TENOR=Os08t0346400-02;KEGG=Os08t0346400-02
Chr08	irgsp1_rep	five_prime_UTR	15695582	15695657	.	+	.	Parent=Os08t0346400-02
Chr08	irgsp1_rep	CDS	15695658	15695832	.	+	0	Parent=Os08t0346400-02
Chr08	irgsp1_rep	CDS	15700949	15701025	.	+	2	Parent=Os08t0346400-02
Chr08	irgsp1_rep	CDS	15701096	15701150	.	+	0	Parent=Os08t0346400-02
Chr08	irgsp1_rep	CDS	15702400	15702469	.	+	2	Parent=Os08t0346400-02
Chr08	irgsp1_rep	CDS	15702630	15702699	.	+	1	Parent=Os08t0346400-02
Chr08	irgsp1_rep	CDS	15703289	15703582	.	+	0	Parent=Os08t0346400-02
Chr08	irgsp1_rep	three_prime_UTR	15703583	15703940	.	+	.	Parent=Os08t0346400-02
Chr08	irgsp1_rep	mRNA	15695637	15698313	.	+	.	ID=Os08t0346400-03;Name=Os08t0346400-03;Locus_id=Os08g0346400;Note=Similar to myb family transcription factor-related protein.;Transcript_evidence=AK062928 (DDBJ%2C Best hit);ORF_evidence=B4FPL5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778);NIAS_FLcDNA=001-109-A04;Expression=AK062928;TENOR=Os08t0346400-03;KEGG=Os08t0346400-03
Chr08	irgsp1_rep	five_prime_UTR	15695637	15695657	.	+	.	Parent=Os08t0346400-03
Chr08	irgsp1_rep	CDS	15695658	15695832	.	+	0	Parent=Os08t0346400-03
Chr08	irgsp1_rep	CDS	15698113	15698126	.	+	2	Parent=Os08t0346400-03
Chr08	irgsp1_rep	three_prime_UTR	15698127	15698313	.	+	.	Parent=Os08t0346400-03
Chr08	irgsp1_rep	mRNA	15712423	15716161	.	+	.	ID=Os08t0346500-00;Name=Os08t0346500-00;Locus_id=Os08g0346500;Note=Transfactor-like protein.;Transcript_evidence=BT033205 (DDBJ);ORF_evidence=NP_001152613.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);TENOR=Os08t0346500-00;KEGG=Os08t0346500-00
Chr08	irgsp1_rep	five_prime_UTR	15712423	15712425	.	+	.	Parent=Os08t0346500-00
Chr08	irgsp1_rep	CDS	15712426	15712633	.	+	0	Parent=Os08t0346500-00
Chr08	irgsp1_rep	CDS	15713436	15713512	.	+	2	Parent=Os08t0346500-00
Chr08	irgsp1_rep	CDS	15713606	15713648	.	+	0	Parent=Os08t0346500-00
Chr08	irgsp1_rep	CDS	15713749	15713806	.	+	2	Parent=Os08t0346500-00
Chr08	irgsp1_rep	CDS	15714818	15714887	.	+	1	Parent=Os08t0346500-00
Chr08	irgsp1_rep	CDS	15715651	15716118	.	+	0	Parent=Os08t0346500-00
Chr08	irgsp1_rep	three_prime_UTR	15716119	15716161	.	+	.	Parent=Os08t0346500-00
Chr08	irgsp1_rep	mRNA	15718068	15719197	.	+	.	ID=Os08t0346600-00;Name=Os08t0346600-00;Locus_id=Os08g0346600;Note=Hypothetical conserved gene.;Transcript_evidence=BT037224 (DDBJ);ORF_evidence=Q84QS9 (UniProt);InterPro=Uncharacterised conserved protein UCP031277 (IPR016971);TENOR=Os08t0346600-00;KEGG=Os08t0346600-00
Chr08	irgsp1_rep	five_prime_UTR	15718068	15718075	.	+	.	Parent=Os08t0346600-00
Chr08	irgsp1_rep	CDS	15718076	15719017	.	+	0	Parent=Os08t0346600-00
Chr08	irgsp1_rep	three_prime_UTR	15719018	15719197	.	+	.	Parent=Os08t0346600-00
Chr08	irgsp1_rep	mRNA	15730023	15731830	.	-	.	ID=Os08t0346800-01;Name=Os08t0346800-01;Locus_id=Os08g0346800;Note=Non-protein coding transcript.;Transcript_evidence=AK064491 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-111-C03;TENOR=Os08t0346800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	exon	15730300	15731830	.	-	.	Parent=Os08t0346800-01
Chr08	irgsp1_rep	exon	15730023	15730205	.	-	.	Parent=Os08t0346800-01
Chr08	irgsp1_rep	mRNA	15736243	15738803	.	-	.	ID=Os08t0346900-00;Name=Os08t0346900-00;Locus_id=Os08g0346900;Note=Hypothetical conserved gene.;Transcript_evidence=CT836007 (DDBJ%2C Best hit);ORF_evidence=NP_001175531.1 (RefSeq);TENOR=Os08t0346900-00;KEGG=Os08t0346900-00
Chr08	irgsp1_rep	five_prime_UTR	15738704	15738803	.	-	.	Parent=Os08t0346900-00
Chr08	irgsp1_rep	CDS	15738673	15738703	.	-	0	Parent=Os08t0346900-00
Chr08	irgsp1_rep	CDS	15738470	15738565	.	-	2	Parent=Os08t0346900-00
Chr08	irgsp1_rep	CDS	15736632	15736742	.	-	2	Parent=Os08t0346900-00
Chr08	irgsp1_rep	CDS	15736518	15736540	.	-	2	Parent=Os08t0346900-00
Chr08	irgsp1_rep	three_prime_UTR	15736243	15736517	.	-	.	Parent=Os08t0346900-00
Chr08	irgsp1_rep	mRNA	15743541	15745120	.	-	.	ID=Os08t0347000-00;Name=Os08t0347000-00;Locus_id=Os08g0347000;Note=Hypothetical conserved gene.;Transcript_evidence=CT835952 (DDBJ%2C Best hit);ORF_evidence=Q6ZDL4 (UniProt);TENOR=Os08t0347000-00;KEGG=Os08t0347000-00
Chr08	irgsp1_rep	five_prime_UTR	15745120	15745120	.	-	.	Parent=Os08t0347000-00
Chr08	irgsp1_rep	CDS	15744990	15745119	.	-	0	Parent=Os08t0347000-00
Chr08	irgsp1_rep	CDS	15744805	15744870	.	-	2	Parent=Os08t0347000-00
Chr08	irgsp1_rep	CDS	15743956	15744049	.	-	2	Parent=Os08t0347000-00
Chr08	irgsp1_rep	CDS	15743845	15743848	.	-	1	Parent=Os08t0347000-00
Chr08	irgsp1_rep	three_prime_UTR	15743541	15743844	.	-	.	Parent=Os08t0347000-00
Chr08	irgsp1_rep	mRNA	15755762	15758527	.	-	.	ID=Os08t0347200-01;Name=Os08t0347200-01;Locus_id=Os08g0347200;Note=Conserved hypothetical protein.;Transcript_evidence=AK058279 (DDBJ%2C Best hit);ORF_evidence=NP_001176373.1 (RefSeq);NIAS_FLcDNA=001-013-C09;Expression=AK058279;TENOR=Os08t0347200-01;KEGG=Os08t0347200-01
Chr08	irgsp1_rep	five_prime_UTR	15758357	15758527	.	-	.	Parent=Os08t0347200-01
Chr08	irgsp1_rep	CDS	15758081	15758356	.	-	0	Parent=Os08t0347200-01
Chr08	irgsp1_rep	three_prime_UTR	15757904	15758080	.	-	.	Parent=Os08t0347200-01
Chr08	irgsp1_rep	three_prime_UTR	15757749	15757812	.	-	.	Parent=Os08t0347200-01
Chr08	irgsp1_rep	three_prime_UTR	15757593	15757681	.	-	.	Parent=Os08t0347200-01
Chr08	irgsp1_rep	three_prime_UTR	15756634	15756886	.	-	.	Parent=Os08t0347200-01
Chr08	irgsp1_rep	three_prime_UTR	15756115	15756226	.	-	.	Parent=Os08t0347200-01
Chr08	irgsp1_rep	three_prime_UTR	15755762	15756034	.	-	.	Parent=Os08t0347200-01
Chr08	irgsp1_rep	mRNA	15766183	15770896	.	-	.	ID=Os08t0347500-00;Name=Os08t0347500-00;Locus_id=Os08g0347500;Note=Similar to PsbP family protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q109K8 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: oxygen evolving complex (GO:0009654),Cellular Component: extrinsic to membrane (GO:0019898),Molecular Function: calcium ion binding (GO:0005509);InterPro=Photosystem II PsbP%2C oxygen evolving complex (IPR002683),Mog1/PsbP%2C alpha/beta/alpha sandwich (IPR016123),Mog1/PsbP/DUF1795%2C alpha/beta/alpha sandwich (IPR016124);TENOR=Os08t0347500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	15770742	15770896	.	-	0	Parent=Os08t0347500-00
Chr08	irgsp1_rep	CDS	15770511	15770608	.	-	1	Parent=Os08t0347500-00
Chr08	irgsp1_rep	CDS	15770289	15770371	.	-	2	Parent=Os08t0347500-00
Chr08	irgsp1_rep	CDS	15770080	15770202	.	-	0	Parent=Os08t0347500-00
Chr08	irgsp1_rep	CDS	15769913	15769984	.	-	0	Parent=Os08t0347500-00
Chr08	irgsp1_rep	CDS	15769096	15769192	.	-	0	Parent=Os08t0347500-00
Chr08	irgsp1_rep	CDS	15768815	15768915	.	-	2	Parent=Os08t0347500-00
Chr08	irgsp1_rep	CDS	15766183	15766365	.	-	0	Parent=Os08t0347500-00
Chr08	irgsp1_rep	mRNA	15772333	15772896	.	-	.	ID=Os08t0347550-01;Name=Os08t0347550-01;Locus_id=Os08g0347550;Note=Non-protein coding transcript.;Transcript_evidence=AK241382 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065155N10;TENOR=Os08t0347550-01
Chr08	irgsp1_rep	exon	15772333	15772896	.	-	.	Parent=Os08t0347550-01
Chr08	irgsp1_rep	mRNA	15825073	15833433	.	-	.	ID=Os08t0348300-00;Name=Os08t0348300-00;Locus_id=Os08g0348300;Note=Hypothetical conserved gene.;Transcript_evidence=CT828269 (DDBJ%2C Best hit);ORF_evidence=NP_001061615.1 (RefSeq);TENOR=Os08t0348300-00;KEGG=Os08t0348300-00
Chr08	irgsp1_rep	five_prime_UTR	15833374	15833433	.	-	.	Parent=Os08t0348300-00
Chr08	irgsp1_rep	CDS	15833355	15833373	.	-	0	Parent=Os08t0348300-00
Chr08	irgsp1_rep	CDS	15833121	15833219	.	-	2	Parent=Os08t0348300-00
Chr08	irgsp1_rep	CDS	15825506	15825659	.	-	2	Parent=Os08t0348300-00
Chr08	irgsp1_rep	CDS	15825316	15825331	.	-	1	Parent=Os08t0348300-00
Chr08	irgsp1_rep	three_prime_UTR	15825073	15825315	.	-	.	Parent=Os08t0348300-00
Chr08	irgsp1_rep	mRNA	15888282	15889860	.	-	.	ID=Os08t0349300-01;Name=Os08t0349300-01;Locus_id=Os08g0349300;Note=Conserved hypothetical protein.;Transcript_evidence=AK062305 (DDBJ%2C Best hit);ORF_evidence=B8BA05 (UniProt);NIAS_FLcDNA=001-101-A11;Expression=AK062305;TENOR=Os08t0349300-01;KEGG=Os08t0349300-01
Chr08	irgsp1_rep	five_prime_UTR	15889753	15889860	.	-	.	Parent=Os08t0349300-01
Chr08	irgsp1_rep	CDS	15889737	15889752	.	-	0	Parent=Os08t0349300-01
Chr08	irgsp1_rep	CDS	15889552	15889638	.	-	2	Parent=Os08t0349300-01
Chr08	irgsp1_rep	CDS	15888586	15888686	.	-	2	Parent=Os08t0349300-01
Chr08	irgsp1_rep	CDS	15888403	15888438	.	-	0	Parent=Os08t0349300-01
Chr08	irgsp1_rep	three_prime_UTR	15888282	15888402	.	-	.	Parent=Os08t0349300-01
Chr08	irgsp1_rep	mRNA	15972793	15977405	.	+	.	ID=Os08t0351200-01;Name=Os08t0351200-01;Locus_id=Os08g0351200;Note=Hypothetical conserved gene.;Transcript_evidence=AK241884 (DDBJ%2C Best hit);ORF_evidence=Q6ZDU3 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);NIAS_FLcDNA=J065219E08;TENOR=Os08t0351200-01;KEGG=Os08t0351200-01
Chr08	irgsp1_rep	five_prime_UTR	15972793	15972861	.	+	.	Parent=Os08t0351200-01
Chr08	irgsp1_rep	five_prime_UTR	15975808	15975851	.	+	.	Parent=Os08t0351200-01
Chr08	irgsp1_rep	CDS	15975852	15976637	.	+	0	Parent=Os08t0351200-01
Chr08	irgsp1_rep	three_prime_UTR	15976638	15977405	.	+	.	Parent=Os08t0351200-01
Chr08	irgsp1_rep	mRNA	15987000	15991648	.	-	.	ID=Os08t0351300-01;Name=Os08t0351300-01;Locus_id=Os08g0351300;Oryzabase Gene Name Synonym(s)=conserved hypothetical protein;Note=Conserved hypothetical protein.;Transcript_evidence=AK068382 (DDBJ%2C Best hit);ORF_evidence=Q5TKD0 (UniProt);NIAS_FLcDNA=J013144G21;Oryzabase=23063;Expression=AK068382;TENOR=Os08t0351300-01;KEGG=Os08t0351300-01
Chr08	irgsp1_rep	five_prime_UTR	15991489	15991648	.	-	.	Parent=Os08t0351300-01
Chr08	irgsp1_rep	five_prime_UTR	15988775	15990497	.	-	.	Parent=Os08t0351300-01
Chr08	irgsp1_rep	CDS	15988370	15988774	.	-	0	Parent=Os08t0351300-01
Chr08	irgsp1_rep	three_prime_UTR	15987663	15988369	.	-	.	Parent=Os08t0351300-01
Chr08	irgsp1_rep	three_prime_UTR	15987000	15987539	.	-	.	Parent=Os08t0351300-01
Chr08	irgsp1_rep	mRNA	16043704	16044478	.	-	.	ID=Os08t0351700-01;Name=Os08t0351700-01;Locus_id=Os08g0351700;Note=Conserved hypothetical protein.;Transcript_evidence=AK109269 (DDBJ%2C Best hit);ORF_evidence=Q6ZDL3 (UniProt);NIAS_FLcDNA=002-188-A04;TENOR=Os08t0351700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	16044477	16044478	.	-	.	Parent=Os08t0351700-01
Chr08	irgsp1_rep	CDS	16044380	16044476	.	-	0	Parent=Os08t0351700-01
Chr08	irgsp1_rep	CDS	16044168	16044266	.	-	2	Parent=Os08t0351700-01
Chr08	irgsp1_rep	CDS	16043987	16044072	.	-	2	Parent=Os08t0351700-01
Chr08	irgsp1_rep	three_prime_UTR	16043704	16043986	.	-	.	Parent=Os08t0351700-01
Chr08	irgsp1_rep	mRNA	16064547	16065718	.	-	.	ID=Os08t0352100-00;Name=Os08t0352100-00;Locus_id=Os08g0352100;Note=Conserved hypothetical protein.;Transcript_evidence=AK058799 (DDBJ%2C Secondary hit);ORF_evidence=NP_001061615.1 (RefSeq);Expression=AK058799;TENOR=Os08t0352100-00;KEGG=Os08t0352100-00
Chr08	irgsp1_rep	five_prime_UTR	16065656	16065718	.	-	.	Parent=Os08t0352100-00
Chr08	irgsp1_rep	CDS	16065637	16065655	.	-	0	Parent=Os08t0352100-00
Chr08	irgsp1_rep	CDS	16065407	16065505	.	-	2	Parent=Os08t0352100-00
Chr08	irgsp1_rep	CDS	16065039	16065191	.	-	2	Parent=Os08t0352100-00
Chr08	irgsp1_rep	CDS	16064856	16064896	.	-	2	Parent=Os08t0352100-00
Chr08	irgsp1_rep	three_prime_UTR	16064632	16064855	.	-	.	Parent=Os08t0352100-00
Chr08	irgsp1_rep	three_prime_UTR	16064547	16064610	.	-	.	Parent=Os08t0352100-00
Chr08	irgsp1_rep	mRNA	16073233	16073838	.	+	.	ID=Os08t0352250-00;Name=Os08t0352250-00;Locus_id=Os08g0352250;Oryzabase Gene Symbol Synonym(s)=OsSTA210;Note=Conserved hypothetical protein.;Transcript_evidence=AK248572 (DDBJ);ORF_evidence=NP_001047605.2 (RefSeq);Oryzabase=19484;TENOR=Os08t0352250-00
Chr08	irgsp1_rep	five_prime_UTR	16073233	16073355	.	+	.	Parent=Os08t0352250-00
Chr08	irgsp1_rep	CDS	16073356	16073838	.	+	0	Parent=Os08t0352250-00
Chr08	irgsp1_rep	mRNA	16074341	16077044	.	-	.	ID=Os08t0352400-01;Name=Os08t0352400-01;Locus_id=Os08g0352400;Note=Hypothetical gene.;Transcript_evidence=AK241358 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065151C19;TENOR=Os08t0352400-01;KEGG=Os08t0352400-01
Chr08	irgsp1_rep	CDS	16076820	16077044	.	-	0	Parent=Os08t0352400-01
Chr08	irgsp1_rep	three_prime_UTR	16076791	16076819	.	-	.	Parent=Os08t0352400-01
Chr08	irgsp1_rep	three_prime_UTR	16075044	16075128	.	-	.	Parent=Os08t0352400-01
Chr08	irgsp1_rep	three_prime_UTR	16074341	16074739	.	-	.	Parent=Os08t0352400-01
Chr08	irgsp1_rep	mRNA	16145099	16146233	.	-	.	ID=Os08t0353700-01;Name=Os08t0353700-01;Locus_id=Os08g0353700;Note=Conserved hypothetical protein.;Transcript_evidence=AK058799 (DDBJ%2C Best hit);ORF_evidence=NP_001061615.1 (RefSeq);NIAS_FLcDNA=001-002-H12;Expression=AK058799;TENOR=Os08t0353700-01;KEGG=Os08t0353700-01
Chr08	irgsp1_rep	five_prime_UTR	16146181	16146233	.	-	.	Parent=Os08t0353700-01
Chr08	irgsp1_rep	CDS	16146152	16146180	.	-	0	Parent=Os08t0353700-01
Chr08	irgsp1_rep	CDS	16145926	16146020	.	-	1	Parent=Os08t0353700-01
Chr08	irgsp1_rep	CDS	16145570	16145722	.	-	2	Parent=Os08t0353700-01
Chr08	irgsp1_rep	CDS	16145389	16145429	.	-	2	Parent=Os08t0353700-01
Chr08	irgsp1_rep	three_prime_UTR	16145099	16145388	.	-	.	Parent=Os08t0353700-01
Chr08	irgsp1_rep	mRNA	16235884	16247701	.	+	.	ID=Os08t0355400-01;Name=Os08t0355400-01;Locus_id=Os08g0355400;Note=Protein of unknown function DUF247%2C plant family protein.;Transcript_evidence=AK060790 (DDBJ%2C Best hit);ORF_evidence=Q6Z5Z5 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);NIAS_FLcDNA=001-033-D11;Expression=AK060790;TENOR=Os08t0355400-01;KEGG=Os08t0355400-01
Chr08	irgsp1_rep	five_prime_UTR	16235884	16235963	.	+	.	Parent=Os08t0355400-01
Chr08	irgsp1_rep	five_prime_UTR	16245815	16245847	.	+	.	Parent=Os08t0355400-01
Chr08	irgsp1_rep	CDS	16245848	16245878	.	+	0	Parent=Os08t0355400-01
Chr08	irgsp1_rep	CDS	16246037	16247475	.	+	2	Parent=Os08t0355400-01
Chr08	irgsp1_rep	three_prime_UTR	16247476	16247701	.	+	.	Parent=Os08t0355400-01
Chr08	irgsp1_rep	mRNA	16235886	16247641	.	+	.	ID=Os08t0355400-02;Name=Os08t0355400-02;Locus_id=Os08g0355400;Note=Hypothetical conserved gene.;Transcript_evidence=AK066704 (DDBJ%2C Best hit);ORF_evidence=Q6Z5Z5 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);NIAS_FLcDNA=J013074C21;Expression=AK066704;TENOR=Os08t0355400-02;KEGG=Os08t0355400-02
Chr08	irgsp1_rep	five_prime_UTR	16235886	16235953	.	+	.	Parent=Os08t0355400-02
Chr08	irgsp1_rep	CDS	16235954	16235963	.	+	0	Parent=Os08t0355400-02
Chr08	irgsp1_rep	CDS	16245815	16247475	.	+	2	Parent=Os08t0355400-02
Chr08	irgsp1_rep	three_prime_UTR	16247476	16247641	.	+	.	Parent=Os08t0355400-02
Chr08	irgsp1_rep	mRNA	16239079	16240262	.	-	.	ID=Os08t0355500-01;Name=Os08t0355500-01;Locus_id=Os08g0355500;Note=Hypothetical conserved gene.;Transcript_evidence=AK119697 (DDBJ%2C Best hit);ORF_evidence=NP_001174852.1 (RefSeq);NIAS_FLcDNA=002-157-D01;Expression=AK119697;TENOR=Os08t0355500-01;KEGG=Os08t0355500-01
Chr08	irgsp1_rep	five_prime_UTR	16240063	16240262	.	-	.	Parent=Os08t0355500-01
Chr08	irgsp1_rep	CDS	16239731	16240062	.	-	0	Parent=Os08t0355500-01
Chr08	irgsp1_rep	CDS	16239267	16239291	.	-	1	Parent=Os08t0355500-01
Chr08	irgsp1_rep	three_prime_UTR	16239079	16239266	.	-	.	Parent=Os08t0355500-01
Chr08	irgsp1_rep	mRNA	16237726	16240241	.	-	.	ID=Os08t0355500-02;Name=Os08t0355500-02;Locus_id=Os08g0355500;Note=Conserved hypothetical protein.;Transcript_evidence=AK102838 (DDBJ%2C Best hit);ORF_evidence=NP_001057581.1 (RefSeq);NIAS_FLcDNA=J033109M01;TENOR=Os08t0355500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	16239939	16240241	.	-	.	Parent=Os08t0355500-02
Chr08	irgsp1_rep	CDS	16239627	16239938	.	-	0	Parent=Os08t0355500-02
Chr08	irgsp1_rep	three_prime_UTR	16237726	16239626	.	-	.	Parent=Os08t0355500-02
Chr08	irgsp1_rep	mRNA	16237710	16240185	.	-	.	ID=Os08t0355500-03;Name=Os08t0355500-03;Locus_id=Os08g0355500;Note=Hypothetical conserved gene.;Transcript_evidence=AK106035 (DDBJ%2C Best hit);ORF_evidence=NP_001174852.1 (RefSeq);NIAS_FLcDNA=001-206-D07;TENOR=Os08t0355500-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	16240063	16240185	.	-	.	Parent=Os08t0355500-03
Chr08	irgsp1_rep	CDS	16239731	16240062	.	-	0	Parent=Os08t0355500-03
Chr08	irgsp1_rep	CDS	16239267	16239291	.	-	1	Parent=Os08t0355500-03
Chr08	irgsp1_rep	three_prime_UTR	16239241	16239266	.	-	.	Parent=Os08t0355500-03
Chr08	irgsp1_rep	three_prime_UTR	16237710	16238205	.	-	.	Parent=Os08t0355500-03
Chr08	irgsp1_rep	mRNA	16264175	16267507	.	-	.	ID=Os08t0356001-01;Name=Os08t0356001-01;Locus_id=Os08g0356001;Note=Conserved hypothetical protein.;Transcript_evidence=AK288872 (DDBJ%2C Best hit);ORF_evidence=Q69M18 (UniProt);NIAS_FLcDNA=J090078I05;TENOR=Os08t0356001-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	16265682	16267507	.	-	.	Parent=Os08t0356001-01
Chr08	irgsp1_rep	CDS	16265346	16265681	.	-	0	Parent=Os08t0356001-01
Chr08	irgsp1_rep	three_prime_UTR	16264175	16265345	.	-	.	Parent=Os08t0356001-01
Chr08	irgsp1_rep	mRNA	16307677	16310159	.	-	.	ID=Os08t0356500-01;Name=Os08t0356500-01;Locus_id=Os08g0356500;Note=Protein of unknown function DUF247%2C plant family protein.;Transcript_evidence=AK101110 (DDBJ%2C Best hit);ORF_evidence=A2YUC6 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);NIAS_FLcDNA=J033025F01;Expression=AK101110;TENOR=Os08t0356500-01;KEGG=Os08t0356500-01
Chr08	irgsp1_rep	five_prime_UTR	16309993	16310159	.	-	.	Parent=Os08t0356500-01
Chr08	irgsp1_rep	CDS	16309944	16309992	.	-	0	Parent=Os08t0356500-01
Chr08	irgsp1_rep	CDS	16308375	16309834	.	-	2	Parent=Os08t0356500-01
Chr08	irgsp1_rep	three_prime_UTR	16307677	16308374	.	-	.	Parent=Os08t0356500-01
Chr08	irgsp1_rep	mRNA	16319988	16322061	.	-	.	ID=Os08t0356700-01;Name=Os08t0356700-01;Locus_id=Os08g0356700;Note=Protein of unknown function DUF247%2C plant family protein.;Transcript_evidence=AK066547 (DDBJ%2C Best hit);ORF_evidence=A2YUC8 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);NIAS_FLcDNA=J013069E22;Expression=AK066547;TENOR=Os08t0356700-01;KEGG=Os08t0356700-01
Chr08	irgsp1_rep	five_prime_UTR	16321945	16322061	.	-	.	Parent=Os08t0356700-01
Chr08	irgsp1_rep	CDS	16321932	16321944	.	-	0	Parent=Os08t0356700-01
Chr08	irgsp1_rep	CDS	16320203	16321830	.	-	2	Parent=Os08t0356700-01
Chr08	irgsp1_rep	three_prime_UTR	16319988	16320202	.	-	.	Parent=Os08t0356700-01
Chr08	irgsp1_rep	mRNA	16331761	16333676	.	-	.	ID=Os08t0356800-01;Name=Os08t0356800-01;Locus_id=Os08g0356800;Note=Protein of unknown function DUF247%2C plant family protein.;Transcript_evidence=AK068581 (DDBJ%2C Best hit);ORF_evidence=A3BSC3 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);NIAS_FLcDNA=J013155K13;Expression=AK068581;TENOR=Os08t0356800-01;KEGG=Os08t0356800-01
Chr08	irgsp1_rep	five_prime_UTR	16333594	16333676	.	-	.	Parent=Os08t0356800-01
Chr08	irgsp1_rep	CDS	16333581	16333593	.	-	0	Parent=Os08t0356800-01
Chr08	irgsp1_rep	CDS	16332007	16333490	.	-	2	Parent=Os08t0356800-01
Chr08	irgsp1_rep	three_prime_UTR	16331761	16332006	.	-	.	Parent=Os08t0356800-01
Chr08	irgsp1_rep	mRNA	16340464	16345158	.	-	.	ID=Os08t0357000-01;Name=Os08t0357000-01;Locus_id=Os08g0357000;Note=Similar to Wound responsive protein.;Transcript_evidence=AK112035 (DDBJ%2C Best hit);ORF_evidence=B6SUR2 (UniProt);InterPro=Domain of unknown function DUF151 (IPR003729);NIAS_FLcDNA=001-040-G04;Expression=AK112035;TENOR=Os08t0357000-01;KEGG=Os08t0357000-01
Chr08	irgsp1_rep	CDS	16344900	16345158	.	-	0	Parent=Os08t0357000-01
Chr08	irgsp1_rep	CDS	16343016	16343186	.	-	2	Parent=Os08t0357000-01
Chr08	irgsp1_rep	CDS	16342882	16342931	.	-	2	Parent=Os08t0357000-01
Chr08	irgsp1_rep	CDS	16342749	16342805	.	-	0	Parent=Os08t0357000-01
Chr08	irgsp1_rep	CDS	16342570	16342635	.	-	0	Parent=Os08t0357000-01
Chr08	irgsp1_rep	CDS	16342394	16342468	.	-	0	Parent=Os08t0357000-01
Chr08	irgsp1_rep	CDS	16341795	16341913	.	-	0	Parent=Os08t0357000-01
Chr08	irgsp1_rep	CDS	16341063	16341154	.	-	1	Parent=Os08t0357000-01
Chr08	irgsp1_rep	CDS	16340713	16340768	.	-	2	Parent=Os08t0357000-01
Chr08	irgsp1_rep	three_prime_UTR	16340710	16340712	.	-	.	Parent=Os08t0357000-01
Chr08	irgsp1_rep	three_prime_UTR	16340464	16340634	.	-	.	Parent=Os08t0357000-01
Chr08	irgsp1_rep	mRNA	16340418	16345157	.	-	.	ID=Os08t0357000-02;Name=Os08t0357000-02;Locus_id=Os08g0357000;Note=Similar to wound responsive protein.;Transcript_evidence=AK105899 (DDBJ%2C Best hit),AK070322 (DDBJ%2C Best hit);ORF_evidence=NP_001158999.1 (RefSeq);InterPro=Domain of unknown function DUF151 (IPR003729);NIAS_FLcDNA=001-204-F07,J023052C20;TENOR=Os08t0357000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	16344900	16345157	.	-	.	Parent=Os08t0357000-02
Chr08	irgsp1_rep	five_prime_UTR	16344591	16344594	.	-	.	Parent=Os08t0357000-02
Chr08	irgsp1_rep	CDS	16344299	16344590	.	-	0	Parent=Os08t0357000-02
Chr08	irgsp1_rep	CDS	16343016	16343186	.	-	2	Parent=Os08t0357000-02
Chr08	irgsp1_rep	CDS	16342882	16342931	.	-	2	Parent=Os08t0357000-02
Chr08	irgsp1_rep	CDS	16342749	16342805	.	-	0	Parent=Os08t0357000-02
Chr08	irgsp1_rep	CDS	16342570	16342635	.	-	0	Parent=Os08t0357000-02
Chr08	irgsp1_rep	CDS	16342394	16342468	.	-	0	Parent=Os08t0357000-02
Chr08	irgsp1_rep	CDS	16341795	16341913	.	-	0	Parent=Os08t0357000-02
Chr08	irgsp1_rep	CDS	16341063	16341154	.	-	1	Parent=Os08t0357000-02
Chr08	irgsp1_rep	CDS	16340713	16340768	.	-	2	Parent=Os08t0357000-02
Chr08	irgsp1_rep	three_prime_UTR	16340710	16340712	.	-	.	Parent=Os08t0357000-02
Chr08	irgsp1_rep	three_prime_UTR	16340418	16340634	.	-	.	Parent=Os08t0357000-02
Chr08	irgsp1_rep	mRNA	16354489	16358206	.	+	.	ID=Os08t0357100-01;Name=Os08t0357100-01;Locus_id=Os08g0357100;Note=Hypothetical gene.;Transcript_evidence=AK288779 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090068O07;TENOR=Os08t0357100-01;KEGG=Os08t0357100-01
Chr08	irgsp1_rep	five_prime_UTR	16354489	16355592	.	+	.	Parent=Os08t0357100-01
Chr08	irgsp1_rep	CDS	16355593	16355916	.	+	0	Parent=Os08t0357100-01
Chr08	irgsp1_rep	three_prime_UTR	16355917	16358206	.	+	.	Parent=Os08t0357100-01
Chr08	irgsp1_rep	mRNA	16372073	16374276	.	+	.	ID=Os08t0357300-01;Name=Os08t0357300-01;Locus_id=Os08g0357300;CGSNL Gene Symbol=BZIP65;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 65;Oryzabase Gene Symbol Synonym(s)=OsbZIP65;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 65;Note=Conserved hypothetical protein.;Transcript_evidence=AK100580 (DDBJ%2C Best hit);ORF_evidence=A3BSC5 (UniProt);NIAS_FLcDNA=J023105M12;Oryzabase=10146;TENOR=Os08t0357300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	16372073	16373712	.	+	.	Parent=Os08t0357300-01
Chr08	irgsp1_rep	CDS	16373713	16374054	.	+	0	Parent=Os08t0357300-01
Chr08	irgsp1_rep	three_prime_UTR	16374055	16374276	.	+	.	Parent=Os08t0357300-01
Chr08	irgsp1_rep	mRNA	16392523	16393362	.	-	.	ID=Os08t0357700-01;Name=Os08t0357700-01;Locus_id=Os08g0357700;Note=Hypothetical conserved gene.;Transcript_evidence=AK103860 (DDBJ%2C Best hit);ORF_evidence=NP_683303.1 (RefSeq);InterPro=DVL (IPR012552);NIAS_FLcDNA=J033149A03;Expression=AK103860;TENOR=Os08t0357700-01;KEGG=Os08t0357700-01
Chr08	irgsp1_rep	five_prime_UTR	16393268	16393362	.	-	.	Parent=Os08t0357700-01
Chr08	irgsp1_rep	CDS	16393148	16393267	.	-	0	Parent=Os08t0357700-01
Chr08	irgsp1_rep	three_prime_UTR	16392523	16393147	.	-	.	Parent=Os08t0357700-01
Chr08	irgsp1_rep	mRNA	16447501	16449981	.	+	.	ID=Os08t0358050-00;Name=Os08t0358050-00;Locus_id=Os08g0358050;Note=Non-protein coding transcript.;Transcript_evidence=CU405717 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os08t0358050-00
Chr08	irgsp1_rep	exon	16447501	16448100	.	+	.	Parent=Os08t0358050-00
Chr08	irgsp1_rep	exon	16448430	16448507	.	+	.	Parent=Os08t0358050-00
Chr08	irgsp1_rep	exon	16449641	16449981	.	+	.	Parent=Os08t0358050-00
Chr08	irgsp1_rep	mRNA	16488474	16490328	.	+	.	ID=Os08t0358800-01;Name=Os08t0358800-01;Locus_id=Os08g0358800;RAP-DB Gene Symbol Synonym(s)=RR13%2C OsRR13%2C Rra12%2C OsRR12%2C OsRRA12;RAP-DB Gene Name Synonym(s)=A-TYPE RESPONSE REGULATOR 13%2C A-TYPE response regulator 13%2C A-type RR 12;CGSNL Gene Symbol=RR13;CGSNL Gene Name=A-TYPE RESPONSE REGULATOR 13;Oryzabase Gene Symbol Synonym(s)=OsRR13%2C Rra12%2C OsRR12%2C OsRRA12%2C RR12;Oryzabase Gene Name Synonym(s)=A-TYPE response regulator 13%2C A-type RR 12;Note=A-type response regulator%2C Cytokinin signaling;Transcript_evidence=BR000320 (DDBJ);ORF_evidence=Q6YZK8 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: two-component response regulator activity (GO:0000156);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),CheY-like superfamily (IPR011006);Manual Curation=May 12%2C 2010;Literature_PMID=16919402,17293362;Oryzabase=8158;TENOR=Os08t0358800-01
Chr08	irgsp1_rep	CDS	16488474	16488603	.	+	0	Parent=Os08t0358800-01
Chr08	irgsp1_rep	CDS	16489743	16489789	.	+	2	Parent=Os08t0358800-01
Chr08	irgsp1_rep	CDS	16489876	16489953	.	+	0	Parent=Os08t0358800-01
Chr08	irgsp1_rep	CDS	16490068	16490138	.	+	0	Parent=Os08t0358800-01
Chr08	irgsp1_rep	CDS	16490247	16490328	.	+	1	Parent=Os08t0358800-01
Chr08	irgsp1_rep	mRNA	16489531	16490328	.	+	.	ID=Os08t0358800-02;Name=Os08t0358800-02;Locus_id=Os08g0358800;RAP-DB Gene Symbol Synonym(s)=OSRR13%2C OsRR13%2C Rra12%2C OsRR12%2C OsRRA12;RAP-DB Gene Name Synonym(s)=A-TYPE RESPONSE REGULATOR 13%2C A-type response regulator 13%2C A-TYPE response regulator 13%2C A-type RR 12;CGSNL Gene Symbol=RR13;CGSNL Gene Name=A-TYPE RESPONSE REGULATOR 13;Oryzabase Gene Symbol Synonym(s)=OsRR13%2C Rra12%2C OsRR12%2C OsRRA12%2C RR12;Oryzabase Gene Name Synonym(s)=A-TYPE response regulator 13%2C A-type RR 12;Note=A-type response regulator%2C Cytokinin signaling;Transcript_evidence=AB249665 (DDBJ);ORF_evidence=Q2HWG0 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: two-component response regulator activity (GO:0000156);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),CheY-like superfamily (IPR011006);Manual Curation=May 12%2C 2010;Literature_PMID=16919402,17293362;Oryzabase=8158;TENOR=Os08t0358800-02
Chr08	irgsp1_rep	CDS	16489531	16489618	.	+	0	Parent=Os08t0358800-02
Chr08	irgsp1_rep	CDS	16489743	16489789	.	+	2	Parent=Os08t0358800-02
Chr08	irgsp1_rep	CDS	16489876	16489953	.	+	0	Parent=Os08t0358800-02
Chr08	irgsp1_rep	CDS	16490068	16490138	.	+	0	Parent=Os08t0358800-02
Chr08	irgsp1_rep	CDS	16490247	16490328	.	+	1	Parent=Os08t0358800-02
Chr08	irgsp1_rep	mRNA	16506139	16510281	.	+	.	ID=Os08t0359000-01;Name=Os08t0359000-01;Locus_id=Os08g0359000;Note=Similar to APE1.;Transcript_evidence=AK066474 (DDBJ%2C Best hit);ORF_evidence=B6TPW9 (UniProt);InterPro=Protein of unknown function DUF2854 (IPR021275);NIAS_FLcDNA=J013070L06;Expression=AK066474;TENOR=Os08t0359000-01;KEGG=Os08t0359000-01
Chr08	irgsp1_rep	five_prime_UTR	16506139	16506302	.	+	.	Parent=Os08t0359000-01
Chr08	irgsp1_rep	CDS	16506303	16506563	.	+	0	Parent=Os08t0359000-01
Chr08	irgsp1_rep	CDS	16506688	16506734	.	+	0	Parent=Os08t0359000-01
Chr08	irgsp1_rep	CDS	16506825	16506925	.	+	1	Parent=Os08t0359000-01
Chr08	irgsp1_rep	CDS	16507262	16507350	.	+	2	Parent=Os08t0359000-01
Chr08	irgsp1_rep	CDS	16507643	16507726	.	+	0	Parent=Os08t0359000-01
Chr08	irgsp1_rep	CDS	16507891	16507944	.	+	0	Parent=Os08t0359000-01
Chr08	irgsp1_rep	CDS	16509318	16509398	.	+	0	Parent=Os08t0359000-01
Chr08	irgsp1_rep	CDS	16509799	16509844	.	+	0	Parent=Os08t0359000-01
Chr08	irgsp1_rep	CDS	16509938	16509990	.	+	2	Parent=Os08t0359000-01
Chr08	irgsp1_rep	three_prime_UTR	16509991	16510281	.	+	.	Parent=Os08t0359000-01
Chr08	irgsp1_rep	mRNA	16512584	16513189	.	+	.	ID=Os08t0359050-00;Name=Os08t0359050-00;Locus_id=Os08g0359050;Note=Hypothetical protein.;Transcript_evidence=FP091988 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0359050-00
Chr08	irgsp1_rep	five_prime_UTR	16512584	16512681	.	+	.	Parent=Os08t0359050-00
Chr08	irgsp1_rep	CDS	16512682	16512951	.	+	0	Parent=Os08t0359050-00
Chr08	irgsp1_rep	three_prime_UTR	16512952	16513189	.	+	.	Parent=Os08t0359050-00
Chr08	irgsp1_rep	mRNA	16513780	16517887	.	-	.	ID=Os08t0359100-01;Name=Os08t0359100-01;Locus_id=Os08g0359100;Note=Similar to Lipid phosphate phosphatase 2 (EC 3.1.3.-) (AtLPP2) (Phosphatidic acid phosphatase 2) (AtPAP2) (Prenyl diphosphate phosphatase).;Transcript_evidence=AK067740 (DDBJ%2C Best hit);ORF_evidence=B6SSC1 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824);InterPro=Phosphatidic acid phosphatase type 2/haloperoxidase (IPR000326),Phosphatidic acid phosphatase/chloroperoxidase%2C N-terminal (IPR016118);NIAS_FLcDNA=J013119L21;Expression=AK067740;TENOR=Os08t0359100-01;KEGG=Os08t0359100-01
Chr08	irgsp1_rep	five_prime_UTR	16517762	16517887	.	-	.	Parent=Os08t0359100-01
Chr08	irgsp1_rep	five_prime_UTR	16517518	16517592	.	-	.	Parent=Os08t0359100-01
Chr08	irgsp1_rep	five_prime_UTR	16516361	16516366	.	-	.	Parent=Os08t0359100-01
Chr08	irgsp1_rep	CDS	16516145	16516360	.	-	0	Parent=Os08t0359100-01
Chr08	irgsp1_rep	CDS	16515951	16516038	.	-	0	Parent=Os08t0359100-01
Chr08	irgsp1_rep	CDS	16515758	16515867	.	-	2	Parent=Os08t0359100-01
Chr08	irgsp1_rep	CDS	16515373	16515466	.	-	0	Parent=Os08t0359100-01
Chr08	irgsp1_rep	CDS	16514429	16514617	.	-	2	Parent=Os08t0359100-01
Chr08	irgsp1_rep	CDS	16514279	16514338	.	-	2	Parent=Os08t0359100-01
Chr08	irgsp1_rep	CDS	16514017	16514192	.	-	2	Parent=Os08t0359100-01
Chr08	irgsp1_rep	three_prime_UTR	16513780	16514016	.	-	.	Parent=Os08t0359100-01
Chr08	irgsp1_rep	mRNA	16522949	16523966	.	-	.	ID=Os08t0359200-01;Name=Os08t0359200-01;Locus_id=Os08g0359200;Note=Hypothetical gene.;Transcript_evidence=AK060942 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=006-201-D03;Expression=AK060942;TENOR=Os08t0359200-01;KEGG=Os08t0359200-01
Chr08	irgsp1_rep	CDS	16523780	16523966	.	-	0	Parent=Os08t0359200-01
Chr08	irgsp1_rep	CDS	16523591	16523622	.	-	2	Parent=Os08t0359200-01
Chr08	irgsp1_rep	three_prime_UTR	16522949	16523590	.	-	.	Parent=Os08t0359200-01
Chr08	irgsp1_rep	mRNA	16519556	16523933	.	-	.	ID=Os08t0359200-02;Name=Os08t0359200-02;Locus_id=Os08g0359200;Note=Similar to Lipid phosphate phosphatase 2 (EC 3.1.3.-) (AtLPP2) (Phosphatidic acid phosphatase 2) (AtPAP2) (Prenyl diphosphate phosphatase).;Transcript_evidence=AK073298 (DDBJ%2C Best hit);ORF_evidence=B6SSC1 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824);InterPro=Phosphatidic acid phosphatase type 2/haloperoxidase (IPR000326),Phosphatidic acid phosphatase/chloroperoxidase%2C N-terminal (IPR016118);NIAS_FLcDNA=J033028F04;Expression=AK073298;TENOR=Os08t0359200-02;KEGG=Os08t0359200-02
Chr08	irgsp1_rep	five_prime_UTR	16523780	16523933	.	-	.	Parent=Os08t0359200-02
Chr08	irgsp1_rep	five_prime_UTR	16523550	16523622	.	-	.	Parent=Os08t0359200-02
Chr08	irgsp1_rep	five_prime_UTR	16522139	16522144	.	-	.	Parent=Os08t0359200-02
Chr08	irgsp1_rep	CDS	16521923	16522138	.	-	0	Parent=Os08t0359200-02
Chr08	irgsp1_rep	CDS	16521754	16521841	.	-	0	Parent=Os08t0359200-02
Chr08	irgsp1_rep	CDS	16521555	16521664	.	-	2	Parent=Os08t0359200-02
Chr08	irgsp1_rep	CDS	16521369	16521462	.	-	0	Parent=Os08t0359200-02
Chr08	irgsp1_rep	CDS	16520342	16520530	.	-	2	Parent=Os08t0359200-02
Chr08	irgsp1_rep	CDS	16520184	16520243	.	-	2	Parent=Os08t0359200-02
Chr08	irgsp1_rep	CDS	16519924	16520099	.	-	2	Parent=Os08t0359200-02
Chr08	irgsp1_rep	three_prime_UTR	16519556	16519923	.	-	.	Parent=Os08t0359200-02
Chr08	irgsp1_rep	mRNA	16519629	16520083	.	-	.	ID=Os08t0359200-03;Name=Os08t0359200-03;Locus_id=Os08g0359200;Note=Similar to Lipid phosphate phosphatase 3.;Transcript_evidence=AK104092 (DDBJ%2C Best hit);ORF_evidence=B6SSC1 (UniProt);NIAS_FLcDNA=001-031-E07;Expression=AK104092;TENOR=Os08t0359200-03;KEGG=Os08t0359200-03
Chr08	irgsp1_rep	five_prime_UTR	16520083	16520083	.	-	.	Parent=Os08t0359200-03
Chr08	irgsp1_rep	CDS	16519924	16520082	.	-	0	Parent=Os08t0359200-03
Chr08	irgsp1_rep	three_prime_UTR	16519629	16519923	.	-	.	Parent=Os08t0359200-03
Chr08	irgsp1_rep	mRNA	16525513	16531234	.	-	.	ID=Os08t0359300-01;Name=Os08t0359300-01;Locus_id=Os08g0359300;Note=Uncharacterised conserved protein UCP031088%2C alpha/beta hydrolase%2C At1g15070 domain containing protein.;Transcript_evidence=AK071671 (DDBJ%2C Best hit);ORF_evidence=E4MY19 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S9%2C serine active site (IPR002471),Uncharacterised conserved protein UCP031088%2C alpha/beta hydrolase%2C At1g15070 (IPR016969);NIAS_FLcDNA=J023107D13;Expression=AK071671;TENOR=Os08t0359300-01;KEGG=Os08t0359300-01
Chr08	irgsp1_rep	five_prime_UTR	16531203	16531234	.	-	.	Parent=Os08t0359300-01
Chr08	irgsp1_rep	CDS	16530918	16531202	.	-	0	Parent=Os08t0359300-01
Chr08	irgsp1_rep	CDS	16530755	16530832	.	-	0	Parent=Os08t0359300-01
Chr08	irgsp1_rep	CDS	16527764	16528297	.	-	0	Parent=Os08t0359300-01
Chr08	irgsp1_rep	CDS	16527489	16527591	.	-	0	Parent=Os08t0359300-01
Chr08	irgsp1_rep	CDS	16527029	16527129	.	-	2	Parent=Os08t0359300-01
Chr08	irgsp1_rep	CDS	16526740	16526914	.	-	0	Parent=Os08t0359300-01
Chr08	irgsp1_rep	CDS	16526272	16526442	.	-	2	Parent=Os08t0359300-01
Chr08	irgsp1_rep	CDS	16526083	16526183	.	-	2	Parent=Os08t0359300-01
Chr08	irgsp1_rep	CDS	16525912	16525968	.	-	0	Parent=Os08t0359300-01
Chr08	irgsp1_rep	three_prime_UTR	16525513	16525911	.	-	.	Parent=Os08t0359300-01
Chr08	irgsp1_rep	mRNA	16525452	16531182	.	-	.	ID=Os08t0359300-02;Name=Os08t0359300-02;Locus_id=Os08g0359300;Note=Uncharacterised conserved protein UCP031088%2C alpha/beta hydrolase%2C At1g15070 domain containing protein.;Transcript_evidence=AK099989 (DDBJ%2C Best hit);ORF_evidence=E4MY19 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S9%2C serine active site (IPR002471),Uncharacterised conserved protein UCP031088%2C alpha/beta hydrolase%2C At1g15070 (IPR016969);NIAS_FLcDNA=J013130P18;Expression=AK099989;TENOR=Os08t0359300-02;KEGG=Os08t0359300-02
Chr08	irgsp1_rep	five_prime_UTR	16531182	16531182	.	-	.	Parent=Os08t0359300-02
Chr08	irgsp1_rep	CDS	16530918	16531181	.	-	0	Parent=Os08t0359300-02
Chr08	irgsp1_rep	CDS	16530755	16530832	.	-	0	Parent=Os08t0359300-02
Chr08	irgsp1_rep	CDS	16527764	16528297	.	-	0	Parent=Os08t0359300-02
Chr08	irgsp1_rep	CDS	16527489	16527591	.	-	0	Parent=Os08t0359300-02
Chr08	irgsp1_rep	CDS	16527029	16527129	.	-	2	Parent=Os08t0359300-02
Chr08	irgsp1_rep	CDS	16526740	16526914	.	-	0	Parent=Os08t0359300-02
Chr08	irgsp1_rep	CDS	16526272	16526442	.	-	2	Parent=Os08t0359300-02
Chr08	irgsp1_rep	CDS	16526083	16526183	.	-	2	Parent=Os08t0359300-02
Chr08	irgsp1_rep	CDS	16525912	16525968	.	-	0	Parent=Os08t0359300-02
Chr08	irgsp1_rep	three_prime_UTR	16525452	16525911	.	-	.	Parent=Os08t0359300-02
Chr08	irgsp1_rep	mRNA	16525902	16531178	.	+	.	ID=Os08t0359400-00;Name=Os08t0359400-00;Locus_id=Os08g0359400;Note=Hypothetical protein.;Transcript_evidence=tplb0032d16 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0359400-00
Chr08	irgsp1_rep	five_prime_UTR	16525902	16525970	.	+	.	Parent=Os08t0359400-00
Chr08	irgsp1_rep	five_prime_UTR	16526086	16526165	.	+	.	Parent=Os08t0359400-00
Chr08	irgsp1_rep	five_prime_UTR	16526254	16526438	.	+	.	Parent=Os08t0359400-00
Chr08	irgsp1_rep	five_prime_UTR	16526733	16526921	.	+	.	Parent=Os08t0359400-00
Chr08	irgsp1_rep	five_prime_UTR	16527038	16527106	.	+	.	Parent=Os08t0359400-00
Chr08	irgsp1_rep	five_prime_UTR	16527466	16527602	.	+	.	Parent=Os08t0359400-00
Chr08	irgsp1_rep	five_prime_UTR	16527738	16528256	.	+	.	Parent=Os08t0359400-00
Chr08	irgsp1_rep	five_prime_UTR	16530633	16530817	.	+	.	Parent=Os08t0359400-00
Chr08	irgsp1_rep	five_prime_UTR	16530903	16530917	.	+	.	Parent=Os08t0359400-00
Chr08	irgsp1_rep	CDS	16530918	16531178	.	+	0	Parent=Os08t0359400-00
Chr08	irgsp1_rep	mRNA	16538476	16542699	.	-	.	ID=Os08t0359500-01;Name=Os08t0359500-01;Locus_id=Os08g0359500;Note=CS domain domain containing protein.;Transcript_evidence=AK112034 (DDBJ%2C Best hit),AK104798 (DDBJ%2C Best hit);ORF_evidence=P0C8Z0 (UniProt);InterPro=CS-like domain (IPR007052),HSP20-like chaperone (IPR008978),CS domain (IPR017447);NIAS_FLcDNA=001-040-E05,001-039-H07;TENOR=Os08t0359500-01
Chr08	irgsp1_rep	five_prime_UTR	16542610	16542699	.	-	.	Parent=Os08t0359500-01
Chr08	irgsp1_rep	CDS	16542605	16542609	.	-	0	Parent=Os08t0359500-01
Chr08	irgsp1_rep	CDS	16540775	16540961	.	-	1	Parent=Os08t0359500-01
Chr08	irgsp1_rep	CDS	16540528	16540678	.	-	0	Parent=Os08t0359500-01
Chr08	irgsp1_rep	CDS	16540013	16540047	.	-	2	Parent=Os08t0359500-01
Chr08	irgsp1_rep	CDS	16539731	16539908	.	-	0	Parent=Os08t0359500-01
Chr08	irgsp1_rep	CDS	16538711	16538796	.	-	2	Parent=Os08t0359500-01
Chr08	irgsp1_rep	three_prime_UTR	16538476	16538710	.	-	.	Parent=Os08t0359500-01
Chr08	irgsp1_rep	mRNA	16546482	16550649	.	-	.	ID=Os08t0359600-01;Name=Os08t0359600-01;Locus_id=Os08g0359600;Note=Similar to 30S ribosomal protein S17.;Transcript_evidence=AK070753 (DDBJ%2C Best hit);ORF_evidence=B6TH50 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S17 (IPR000266),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),Ribosomal protein S17%2C bacterial-type (IPR019984);NIAS_FLcDNA=J023065H04;Expression=AK070753;TENOR=Os08t0359600-01;KEGG=Os08t0359600-01
Chr08	irgsp1_rep	five_prime_UTR	16550448	16550649	.	-	.	Parent=Os08t0359600-01
Chr08	irgsp1_rep	CDS	16550286	16550447	.	-	0	Parent=Os08t0359600-01
Chr08	irgsp1_rep	CDS	16546714	16546875	.	-	0	Parent=Os08t0359600-01
Chr08	irgsp1_rep	three_prime_UTR	16546482	16546713	.	-	.	Parent=Os08t0359600-01
Chr08	irgsp1_rep	mRNA	16559389	16559982	.	+	.	ID=Os08t0359900-00;Name=Os08t0359900-00;Locus_id=Os08g0359900;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0001k01 (Wheat FLcDNA);ORF_evidence=NP_001061633.1 (RefSeq);TENOR=Os08t0359900-00;KEGG=Os08t0359900-00
Chr08	irgsp1_rep	five_prime_UTR	16559389	16559435	.	+	.	Parent=Os08t0359900-00
Chr08	irgsp1_rep	CDS	16559436	16559975	.	+	0	Parent=Os08t0359900-00
Chr08	irgsp1_rep	three_prime_UTR	16559976	16559982	.	+	.	Parent=Os08t0359900-00
Chr08	irgsp1_rep	mRNA	16581333	16582523	.	+	.	ID=Os08t0360000-01;Name=Os08t0360000-01;Locus_id=Os08g0360000;Note=Conserved hypothetical protein.;Transcript_evidence=AK111240 (DDBJ%2C Best hit);ORF_evidence=B8BA16 (UniProt);NIAS_FLcDNA=002-180-C11;Expression=AK111240;TENOR=Os08t0360000-01;KEGG=Os08t0360000-01
Chr08	irgsp1_rep	five_prime_UTR	16581333	16581440	.	+	.	Parent=Os08t0360000-01
Chr08	irgsp1_rep	CDS	16581441	16581608	.	+	0	Parent=Os08t0360000-01
Chr08	irgsp1_rep	CDS	16581897	16582127	.	+	0	Parent=Os08t0360000-01
Chr08	irgsp1_rep	three_prime_UTR	16582128	16582523	.	+	.	Parent=Os08t0360000-01
Chr08	irgsp1_rep	mRNA	16582651	16586421	.	-	.	ID=Os08t0360100-01;Name=Os08t0360100-01;Locus_id=Os08g0360100;CGSNL Gene Symbol=CRS1;Oryzabase Gene Symbol Synonym(s)=OsCRS1;Note=RNA-binding%2C CRM domain domain containing protein.;Transcript_evidence=AK066365 (DDBJ%2C Best hit);ORF_evidence=NP_001105008.1 (RefSeq);GO=Molecular Function: RNA binding (GO:0003723);InterPro=RNA-binding%2C CRM domain (IPR001890);NIAS_FLcDNA=J013063B12;Oryzabase=23499;Expression=AK066365;TENOR=Os08t0360100-01;KEGG=Os08t0360100-01
Chr08	irgsp1_rep	five_prime_UTR	16586375	16586421	.	-	.	Parent=Os08t0360100-01
Chr08	irgsp1_rep	CDS	16586342	16586374	.	-	0	Parent=Os08t0360100-01
Chr08	irgsp1_rep	CDS	16585667	16586293	.	-	0	Parent=Os08t0360100-01
Chr08	irgsp1_rep	CDS	16584659	16585124	.	-	0	Parent=Os08t0360100-01
Chr08	irgsp1_rep	CDS	16584289	16584419	.	-	2	Parent=Os08t0360100-01
Chr08	irgsp1_rep	CDS	16583843	16584190	.	-	0	Parent=Os08t0360100-01
Chr08	irgsp1_rep	CDS	16583603	16583759	.	-	0	Parent=Os08t0360100-01
Chr08	irgsp1_rep	CDS	16583189	16583481	.	-	2	Parent=Os08t0360100-01
Chr08	irgsp1_rep	CDS	16583041	16583100	.	-	0	Parent=Os08t0360100-01
Chr08	irgsp1_rep	CDS	16582878	16582940	.	-	0	Parent=Os08t0360100-01
Chr08	irgsp1_rep	three_prime_UTR	16582651	16582877	.	-	.	Parent=Os08t0360100-01
Chr08	irgsp1_rep	mRNA	16583182	16586385	.	+	.	ID=Os08t0360150-00;Name=Os08t0360150-00;Locus_id=Os08g0360150;Note=Hypothetical protein.;Transcript_evidence=tplb0062e03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0360150-00
Chr08	irgsp1_rep	five_prime_UTR	16583182	16583475	.	+	.	Parent=Os08t0360150-00
Chr08	irgsp1_rep	five_prime_UTR	16583596	16583754	.	+	.	Parent=Os08t0360150-00
Chr08	irgsp1_rep	five_prime_UTR	16583838	16584182	.	+	.	Parent=Os08t0360150-00
Chr08	irgsp1_rep	five_prime_UTR	16584277	16584409	.	+	.	Parent=Os08t0360150-00
Chr08	irgsp1_rep	five_prime_UTR	16584650	16585116	.	+	.	Parent=Os08t0360150-00
Chr08	irgsp1_rep	five_prime_UTR	16585660	16585691	.	+	.	Parent=Os08t0360150-00
Chr08	irgsp1_rep	CDS	16585692	16586385	.	+	0	Parent=Os08t0360150-00
Chr08	irgsp1_rep	mRNA	16587427	16587750	.	+	.	ID=Os08t0360200-00;Name=Os08t0360200-00;Locus_id=Os08g0360200;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6YYA2 (UniProt);TENOR=Os08t0360200-00
Chr08	irgsp1_rep	CDS	16587427	16587496	.	+	0	Parent=Os08t0360200-00
Chr08	irgsp1_rep	CDS	16587581	16587750	.	+	2	Parent=Os08t0360200-00
Chr08	irgsp1_rep	mRNA	16593210	16596198	.	+	.	ID=Os08t0360300-00;Name=Os08t0360300-00;Locus_id=Os08g0360300;Note=Calmodulin binding protein-like domain containing protein.;Transcript_evidence=AK369279 (DDBJ);ORF_evidence=Q6YYA1 (UniProt);InterPro=Calmodulin binding protein-like (IPR012416);TENOR=Os08t0360300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	16593210	16593210	.	+	.	Parent=Os08t0360300-00
Chr08	irgsp1_rep	CDS	16593211	16593344	.	+	0	Parent=Os08t0360300-00
Chr08	irgsp1_rep	CDS	16593669	16593744	.	+	1	Parent=Os08t0360300-00
Chr08	irgsp1_rep	CDS	16594183	16594238	.	+	0	Parent=Os08t0360300-00
Chr08	irgsp1_rep	CDS	16594499	16595016	.	+	1	Parent=Os08t0360300-00
Chr08	irgsp1_rep	CDS	16595097	16595257	.	+	2	Parent=Os08t0360300-00
Chr08	irgsp1_rep	CDS	16595371	16595559	.	+	0	Parent=Os08t0360300-00
Chr08	irgsp1_rep	CDS	16595670	16595808	.	+	0	Parent=Os08t0360300-00
Chr08	irgsp1_rep	CDS	16595957	16596009	.	+	2	Parent=Os08t0360300-00
Chr08	irgsp1_rep	three_prime_UTR	16596010	16596198	.	+	.	Parent=Os08t0360300-00
Chr08	irgsp1_rep	mRNA	16610854	16612497	.	+	.	ID=Os08t0360400-00;Name=Os08t0360400-00;Locus_id=Os08g0360400;Oryzabase Gene Symbol Synonym(s)=OsFbox441%2C Os_F0010;Oryzabase Gene Name Synonym(s)=F-box protein 441;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK374846 (DDBJ);ORF_evidence=Q6YYA0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17212;TENOR=Os08t0360400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	16610854	16611405	.	+	0	Parent=Os08t0360400-00
Chr08	irgsp1_rep	three_prime_UTR	16611406	16611993	.	+	.	Parent=Os08t0360400-00
Chr08	irgsp1_rep	three_prime_UTR	16612069	16612497	.	+	.	Parent=Os08t0360400-00
Chr08	irgsp1_rep	mRNA	16619670	16620126	.	+	.	ID=Os08t0360700-01;Name=Os08t0360700-01;Locus_id=Os08g0360700;Note=Conserved hypothetical protein.;Transcript_evidence=AK242383 (DDBJ%2C Best hit);ORF_evidence=NP_001061637.2 (RefSeq);NIAS_FLcDNA=J080045F19;TENOR=Os08t0360700-01;KEGG=Os08t0360700-01
Chr08	irgsp1_rep	CDS	16619670	16619867	.	+	0	Parent=Os08t0360700-01
Chr08	irgsp1_rep	three_prime_UTR	16619868	16620126	.	+	.	Parent=Os08t0360700-01
Chr08	irgsp1_rep	mRNA	16621094	16625414	.	-	.	ID=Os08t0360800-01;Name=Os08t0360800-01;Locus_id=Os08g0360800;CGSNL Gene Symbol=ERF138;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 138;Oryzabase Gene Symbol Synonym(s)=OsERF#138%2C OsERF138%2C AP2/EREBP#108%2C AP2/EREBP108;Oryzabase Gene Name Synonym(s)=ethylene response factor 138%2C APETALA2/ethylene-responsive element binding protein 108;Note=Hypothetical conserved gene.;Transcript_evidence=AK288158 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090001B18;Oryzabase=10631;TENOR=Os08t0360800-01;KEGG=Os08t0360800-01
Chr08	irgsp1_rep	five_prime_UTR	16622329	16625414	.	-	.	Parent=Os08t0360800-01
Chr08	irgsp1_rep	CDS	16621759	16622328	.	-	0	Parent=Os08t0360800-01
Chr08	irgsp1_rep	three_prime_UTR	16621094	16621758	.	-	.	Parent=Os08t0360800-01
Chr08	irgsp1_rep	mRNA	16626925	16633250	.	+	.	ID=Os08t0361000-01;Name=Os08t0361000-01;Locus_id=Os08g0361000;Note=Conserved hypothetical protein.;Transcript_evidence=AK070805 (DDBJ%2C Best hit);ORF_evidence=NP_001061949.1 (RefSeq);NIAS_FLcDNA=J023071G16;TENOR=Os08t0361000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	16626925	16627226	.	+	.	Parent=Os08t0361000-01
Chr08	irgsp1_rep	five_prime_UTR	16627349	16627470	.	+	.	Parent=Os08t0361000-01
Chr08	irgsp1_rep	five_prime_UTR	16627941	16627950	.	+	.	Parent=Os08t0361000-01
Chr08	irgsp1_rep	CDS	16627951	16628112	.	+	0	Parent=Os08t0361000-01
Chr08	irgsp1_rep	CDS	16628634	16628825	.	+	0	Parent=Os08t0361000-01
Chr08	irgsp1_rep	CDS	16629801	16630028	.	+	0	Parent=Os08t0361000-01
Chr08	irgsp1_rep	three_prime_UTR	16630029	16630402	.	+	.	Parent=Os08t0361000-01
Chr08	irgsp1_rep	three_prime_UTR	16630491	16630743	.	+	.	Parent=Os08t0361000-01
Chr08	irgsp1_rep	three_prime_UTR	16630836	16630892	.	+	.	Parent=Os08t0361000-01
Chr08	irgsp1_rep	three_prime_UTR	16631637	16631668	.	+	.	Parent=Os08t0361000-01
Chr08	irgsp1_rep	three_prime_UTR	16632130	16632265	.	+	.	Parent=Os08t0361000-01
Chr08	irgsp1_rep	three_prime_UTR	16632350	16632520	.	+	.	Parent=Os08t0361000-01
Chr08	irgsp1_rep	three_prime_UTR	16632672	16632903	.	+	.	Parent=Os08t0361000-01
Chr08	irgsp1_rep	three_prime_UTR	16632989	16633250	.	+	.	Parent=Os08t0361000-01
Chr08	irgsp1_rep	mRNA	16639823	16642247	.	-	.	ID=Os08t0361300-01;Name=Os08t0361300-01;Locus_id=Os08g0361300;Note=Conserved hypothetical protein.;Transcript_evidence=AK105584 (DDBJ%2C Best hit);ORF_evidence=A2XPG0 (UniProt);NIAS_FLcDNA=001-128-E10;TENOR=Os08t0361300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	16642113	16642247	.	-	.	Parent=Os08t0361300-01
Chr08	irgsp1_rep	five_prime_UTR	16641933	16641996	.	-	.	Parent=Os08t0361300-01
Chr08	irgsp1_rep	CDS	16641822	16641932	.	-	0	Parent=Os08t0361300-01
Chr08	irgsp1_rep	CDS	16639823	16641003	.	-	0	Parent=Os08t0361300-01
Chr08	irgsp1_rep	mRNA	16797593	16800891	.	+	.	ID=Os08t0363000-01;Name=Os08t0363000-01;Locus_id=Os08g0363000;Note=Protein of unknown function DUF295 family protein.;Transcript_evidence=AK106532 (DDBJ%2C Best hit),AK103677 (DDBJ%2C Best hit);ORF_evidence=Q10SR6 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174);NIAS_FLcDNA=002-108-A06,J033136B21;TENOR=Os08t0363000-01
Chr08	irgsp1_rep	five_prime_UTR	16797593	16797809	.	+	.	Parent=Os08t0363000-01
Chr08	irgsp1_rep	five_prime_UTR	16797910	16797961	.	+	.	Parent=Os08t0363000-01
Chr08	irgsp1_rep	CDS	16797962	16799181	.	+	0	Parent=Os08t0363000-01
Chr08	irgsp1_rep	CDS	16799306	16799366	.	+	1	Parent=Os08t0363000-01
Chr08	irgsp1_rep	three_prime_UTR	16799367	16799377	.	+	.	Parent=Os08t0363000-01
Chr08	irgsp1_rep	three_prime_UTR	16800558	16800891	.	+	.	Parent=Os08t0363000-01
Chr08	irgsp1_rep	mRNA	16811699	16814911	.	+	.	ID=Os08t0363200-01;Name=Os08t0363200-01;Locus_id=Os08g0363200;Note=Conserved hypothetical protein.;Transcript_evidence=AK064067 (DDBJ%2C Best hit);ORF_evidence=B8BAB4 (UniProt);NIAS_FLcDNA=001-125-G07;TENOR=Os08t0363200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	16811699	16811917	.	+	.	Parent=Os08t0363200-01
Chr08	irgsp1_rep	CDS	16811918	16812361	.	+	0	Parent=Os08t0363200-01
Chr08	irgsp1_rep	three_prime_UTR	16812362	16812621	.	+	.	Parent=Os08t0363200-01
Chr08	irgsp1_rep	three_prime_UTR	16812733	16812991	.	+	.	Parent=Os08t0363200-01
Chr08	irgsp1_rep	three_prime_UTR	16813727	16813803	.	+	.	Parent=Os08t0363200-01
Chr08	irgsp1_rep	three_prime_UTR	16814792	16814911	.	+	.	Parent=Os08t0363200-01
Chr08	irgsp1_rep	mRNA	16811726	16814911	.	+	.	ID=Os08t0363200-02;Name=Os08t0363200-02;Locus_id=Os08g0363200;Note=Conserved hypothetical protein.;Transcript_evidence=AK122116 (DDBJ%2C Best hit);ORF_evidence=B8BAB4 (UniProt);NIAS_FLcDNA=J033128A21;TENOR=Os08t0363200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	16811726	16811917	.	+	.	Parent=Os08t0363200-02
Chr08	irgsp1_rep	CDS	16811918	16812361	.	+	0	Parent=Os08t0363200-02
Chr08	irgsp1_rep	three_prime_UTR	16812362	16812580	.	+	.	Parent=Os08t0363200-02
Chr08	irgsp1_rep	three_prime_UTR	16812733	16812991	.	+	.	Parent=Os08t0363200-02
Chr08	irgsp1_rep	three_prime_UTR	16813727	16813803	.	+	.	Parent=Os08t0363200-02
Chr08	irgsp1_rep	three_prime_UTR	16814792	16814911	.	+	.	Parent=Os08t0363200-02
Chr08	irgsp1_rep	mRNA	16836126	16837977	.	-	.	ID=Os08t0363800-00;Name=Os08t0363800-00;Locus_id=Os08g0363800;Note=Similar to protein aq_1857.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001148399.1 (RefSeq);GO=Biological Process: iron-sulfur cluster assembly (GO:0016226),Molecular Function: structural molecule activity (GO:0005198),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=FeS cluster biogenesis (IPR000361),FeS cluster insertion (IPR016092);TENOR=Os08t0363800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	16837892	16837977	.	-	0	Parent=Os08t0363800-00
Chr08	irgsp1_rep	CDS	16837601	16837709	.	-	1	Parent=Os08t0363800-00
Chr08	irgsp1_rep	CDS	16836835	16836884	.	-	0	Parent=Os08t0363800-00
Chr08	irgsp1_rep	CDS	16836126	16836159	.	-	1	Parent=Os08t0363800-00
Chr08	irgsp1_rep	mRNA	16845951	16849354	.	+	.	ID=Os08t0363900-00;Name=Os08t0363900-00;Locus_id=Os08g0363900;Note=Hypothetical conserved gene.;Transcript_evidence=AK071493 (DDBJ%2C Secondary hit);ORF_evidence=B9G0L9 (UniProt);InterPro=Tesmin/TSO1-like%2C CXC (IPR005172);TENOR=Os08t0363900-00
Chr08	irgsp1_rep	five_prime_UTR	16845951	16846116	.	+	.	Parent=Os08t0363900-00
Chr08	irgsp1_rep	five_prime_UTR	16846517	16846559	.	+	.	Parent=Os08t0363900-00
Chr08	irgsp1_rep	CDS	16846560	16846972	.	+	0	Parent=Os08t0363900-00
Chr08	irgsp1_rep	CDS	16847237	16847344	.	+	1	Parent=Os08t0363900-00
Chr08	irgsp1_rep	CDS	16847897	16848068	.	+	1	Parent=Os08t0363900-00
Chr08	irgsp1_rep	CDS	16848981	16849354	.	+	0	Parent=Os08t0363900-00
Chr08	irgsp1_rep	mRNA	16852232	16852639	.	-	.	ID=Os08t0364100-00;Name=Os08t0364100-00;Locus_id=Os08g0364100;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001061642.2 (RefSeq);TENOR=Os08t0364100-00
Chr08	irgsp1_rep	CDS	16852232	16852639	.	-	0	Parent=Os08t0364100-00
Chr08	irgsp1_rep	mRNA	16868215	16870806	.	+	.	ID=Os08t0364400-00;Name=Os08t0364400-00;Locus_id=Os08g0364400;Note=Similar to Low-temperature germinability 3-1.;Transcript_evidence=EU962260 (DDBJ);ORF_evidence=Q10T25 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);TENOR=Os08t0364400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	16868215	16868510	.	+	.	Parent=Os08t0364400-00
Chr08	irgsp1_rep	five_prime_UTR	16869429	16869452	.	+	.	Parent=Os08t0364400-00
Chr08	irgsp1_rep	CDS	16869453	16869578	.	+	0	Parent=Os08t0364400-00
Chr08	irgsp1_rep	CDS	16870663	16870806	.	+	0	Parent=Os08t0364400-00
Chr08	irgsp1_rep	mRNA	16873016	16873844	.	+	.	ID=Os08t0364500-00;Name=Os08t0364500-00;Locus_id=Os08g0364500;Note=Conserved hypothetical protein.;Transcript_evidence=DQ244461 (DDBJ);ORF_evidence=Q8H4W9 (UniProt);TENOR=Os08t0364500-00;KEGG=Os08t0364500-00
Chr08	irgsp1_rep	five_prime_UTR	16873016	16873045	.	+	.	Parent=Os08t0364500-00
Chr08	irgsp1_rep	CDS	16873046	16873277	.	+	0	Parent=Os08t0364500-00
Chr08	irgsp1_rep	CDS	16873636	16873790	.	+	2	Parent=Os08t0364500-00
Chr08	irgsp1_rep	three_prime_UTR	16873791	16873844	.	+	.	Parent=Os08t0364500-00
Chr08	irgsp1_rep	mRNA	16892349	16896395	.	+	.	ID=Os08t0364900-00;Name=Os08t0364900-00;Locus_id=Os08g0364900;Note=Similar to Pirin-like protein.;Transcript_evidence=CT833724 (DDBJ%2C Best hit);ORF_evidence=B6TZU6 (UniProt);InterPro=Pirin%2C N-terminal (IPR003829),Pirin%2C C-terminal (IPR008778),Cupin%2C RmlC-type (IPR011051),Pirin (IPR012093),RmlC-like jelly roll fold (IPR014710);TENOR=Os08t0364900-00;KEGG=Os08t0364900-00
Chr08	irgsp1_rep	five_prime_UTR	16892349	16892409	.	+	.	Parent=Os08t0364900-00
Chr08	irgsp1_rep	CDS	16892410	16892543	.	+	0	Parent=Os08t0364900-00
Chr08	irgsp1_rep	CDS	16892653	16892831	.	+	1	Parent=Os08t0364900-00
Chr08	irgsp1_rep	CDS	16893593	16893631	.	+	2	Parent=Os08t0364900-00
Chr08	irgsp1_rep	CDS	16893807	16893835	.	+	2	Parent=Os08t0364900-00
Chr08	irgsp1_rep	CDS	16894020	16894082	.	+	0	Parent=Os08t0364900-00
Chr08	irgsp1_rep	CDS	16895430	16895533	.	+	0	Parent=Os08t0364900-00
Chr08	irgsp1_rep	CDS	16895651	16896161	.	+	1	Parent=Os08t0364900-00
Chr08	irgsp1_rep	three_prime_UTR	16896162	16896395	.	+	.	Parent=Os08t0364900-00
Chr08	irgsp1_rep	mRNA	16919056	16920093	.	-	.	ID=Os08t0365500-00;Name=Os08t0365500-00;Locus_id=Os08g0365500;CGSNL Gene Symbol=WAK77;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 77;Oryzabase Gene Symbol Synonym(s)=OsWAK77%2C OsRLCK252%2C RLCK252;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 252;Note=Similar to WAK80 - OsWAK receptor-like protein kinase.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001147058.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);Oryzabase=6967;TENOR=Os08t0365500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	16919056	16920093	.	-	0	Parent=Os08t0365500-00
Chr08	irgsp1_rep	mRNA	16939933	16941786	.	-	.	ID=Os08t0365800-00;Name=Os08t0365800-00;Locus_id=Os08g0365800;Note=Hypothetical conserved gene.;Transcript_evidence=AK332442 (DDBJ);ORF_evidence=NP_001175539.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515);InterPro=EGF-type aspartate/asparagine hydroxylation site (IPR000152),EGF-like calcium-binding (IPR001881),Epidermal growth factor-like (IPR006210),EGF-like calcium-binding%2C conserved site (IPR018097);TENOR=Os08t0365800-00;KEGG=Os08t0365800-00
Chr08	irgsp1_rep	CDS	16940685	16941786	.	-	0	Parent=Os08t0365800-00
Chr08	irgsp1_rep	CDS	16939933	16940318	.	-	2	Parent=Os08t0365800-00
Chr08	irgsp1_rep	mRNA	16946485	16959993	.	-	.	ID=Os08t0365900-01;Name=Os08t0365900-01;Locus_id=Os08g0365900;Note=Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p domain containing protein.;Transcript_evidence=AK102062 (DDBJ%2C Best hit);ORF_evidence=NP_172143.3 (RefSeq);GO=Molecular Function: RNA binding (GO:0003723),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (IPR001678),Pseudouridine synthase/archaeosine transglycosylase (IPR002478),PUA-like domain (IPR015947),Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p%2C conserved site (IPR018314),RNA (C5-cytosine) methyltransferase (IPR023267);NIAS_FLcDNA=J033082D18;Expression=AK102062;TENOR=Os08t0365900-01;KEGG=Os08t0365900-01
Chr08	irgsp1_rep	five_prime_UTR	16959888	16959993	.	-	.	Parent=Os08t0365900-01
Chr08	irgsp1_rep	CDS	16959724	16959887	.	-	0	Parent=Os08t0365900-01
Chr08	irgsp1_rep	CDS	16957852	16958176	.	-	1	Parent=Os08t0365900-01
Chr08	irgsp1_rep	CDS	16957265	16957412	.	-	0	Parent=Os08t0365900-01
Chr08	irgsp1_rep	CDS	16956949	16957086	.	-	2	Parent=Os08t0365900-01
Chr08	irgsp1_rep	CDS	16954684	16954746	.	-	2	Parent=Os08t0365900-01
Chr08	irgsp1_rep	CDS	16954166	16954287	.	-	2	Parent=Os08t0365900-01
Chr08	irgsp1_rep	CDS	16952175	16952412	.	-	0	Parent=Os08t0365900-01
Chr08	irgsp1_rep	CDS	16951664	16951872	.	-	2	Parent=Os08t0365900-01
Chr08	irgsp1_rep	CDS	16949971	16950071	.	-	0	Parent=Os08t0365900-01
Chr08	irgsp1_rep	CDS	16949305	16949386	.	-	1	Parent=Os08t0365900-01
Chr08	irgsp1_rep	CDS	16948874	16948938	.	-	0	Parent=Os08t0365900-01
Chr08	irgsp1_rep	CDS	16946904	16947018	.	-	1	Parent=Os08t0365900-01
Chr08	irgsp1_rep	three_prime_UTR	16946485	16946903	.	-	.	Parent=Os08t0365900-01
Chr08	irgsp1_rep	mRNA	16946645	16957883	.	-	.	ID=Os08t0365900-02;Name=Os08t0365900-02;Locus_id=Os08g0365900;Note=Similar to NOL1/NOP2/sun family protein.;Transcript_evidence=AK059023 (DDBJ%2C Best hit);ORF_evidence=NP_172143.3 (RefSeq);GO=Molecular Function: RNA binding (GO:0003723),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (IPR001678),Pseudouridine synthase/archaeosine transglycosylase (IPR002478),PUA-like domain (IPR015947),Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p%2C conserved site (IPR018314),RNA (C5-cytosine) methyltransferase (IPR023267);NIAS_FLcDNA=001-021-B06;Expression=AK059023;TENOR=Os08t0365900-02;KEGG=Os08t0365900-02
Chr08	irgsp1_rep	five_prime_UTR	16957882	16957883	.	-	.	Parent=Os08t0365900-02
Chr08	irgsp1_rep	CDS	16957852	16957881	.	-	0	Parent=Os08t0365900-02
Chr08	irgsp1_rep	CDS	16957265	16957412	.	-	0	Parent=Os08t0365900-02
Chr08	irgsp1_rep	CDS	16956949	16957086	.	-	2	Parent=Os08t0365900-02
Chr08	irgsp1_rep	CDS	16954684	16954746	.	-	2	Parent=Os08t0365900-02
Chr08	irgsp1_rep	CDS	16954166	16954287	.	-	2	Parent=Os08t0365900-02
Chr08	irgsp1_rep	CDS	16952175	16952412	.	-	0	Parent=Os08t0365900-02
Chr08	irgsp1_rep	CDS	16951664	16951872	.	-	2	Parent=Os08t0365900-02
Chr08	irgsp1_rep	CDS	16949971	16950071	.	-	0	Parent=Os08t0365900-02
Chr08	irgsp1_rep	CDS	16949305	16949386	.	-	1	Parent=Os08t0365900-02
Chr08	irgsp1_rep	CDS	16948874	16948938	.	-	0	Parent=Os08t0365900-02
Chr08	irgsp1_rep	CDS	16946904	16947018	.	-	1	Parent=Os08t0365900-02
Chr08	irgsp1_rep	three_prime_UTR	16946645	16946903	.	-	.	Parent=Os08t0365900-02
Chr08	irgsp1_rep	mRNA	16964711	16970563	.	-	.	ID=Os08t0366000-01;Name=Os08t0366000-01;Locus_id=Os08g0366000;RAP-DB Gene Symbol Synonym(s)=Osppc2a;RAP-DB Gene Name Synonym(s)=Phosphoenolpyruvate carboxylase 2a;Oryzabase Gene Symbol Synonym(s)=Osppc%2C OSPPC%2C Osppc2a%2C ppc2a;Oryzabase Gene Name Synonym(s)=phosphoenolpyruvate carboxylase%2C phosphoenolpyruvate carboxylase 2a%2C PEPCase 2a;Note=Phosphoenolpyruvate carboxylase;Transcript_evidence=AK073703;ORF_evidence=Q8H4V1;GO=Biological Process: tricarboxylic acid cycle (GO:0006099),Biological Process: carbon fixation (GO:0015977),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphoenolpyruvate carboxylase activity (GO:0008964);InterPro=Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily (IPR015813),Phosphoenolpyruvate carboxylase (IPR021135),Phosphoenolpyruvate carboxylase%2C bacterial/plant-type (IPR022805),Phosphoenolpyruvate carboxylase%2C Lys active site (IPR018129),Phosphoenolpyruvate carboxylase%2C His active site (IPR033129);NIAS_FLcDNA=J033055B18;Manual Curation=October 7%2C 2020;Literature_PMID=25505033,20194759;Oryzabase=15695;Expression=AK073703;TENOR=Os08t0366000-01;KEGG=Os08t0366000-01 (EC:4.1.1.31)
Chr08	irgsp1_rep	five_prime_UTR	16970248	16970563	.	-	.	Parent=Os08t0366000-01
Chr08	irgsp1_rep	CDS	16970083	16970247	.	-	0	Parent=Os08t0366000-01
Chr08	irgsp1_rep	CDS	16968248	16968639	.	-	0	Parent=Os08t0366000-01
Chr08	irgsp1_rep	CDS	16968081	16968165	.	-	1	Parent=Os08t0366000-01
Chr08	irgsp1_rep	CDS	16967666	16967888	.	-	0	Parent=Os08t0366000-01
Chr08	irgsp1_rep	CDS	16967483	16967586	.	-	2	Parent=Os08t0366000-01
Chr08	irgsp1_rep	CDS	16967324	16967411	.	-	0	Parent=Os08t0366000-01
Chr08	irgsp1_rep	CDS	16967082	16967236	.	-	2	Parent=Os08t0366000-01
Chr08	irgsp1_rep	CDS	16965979	16966977	.	-	0	Parent=Os08t0366000-01
Chr08	irgsp1_rep	CDS	16965457	16965843	.	-	0	Parent=Os08t0366000-01
Chr08	irgsp1_rep	CDS	16965035	16965331	.	-	0	Parent=Os08t0366000-01
Chr08	irgsp1_rep	three_prime_UTR	16964711	16965034	.	-	.	Parent=Os08t0366000-01
Chr08	irgsp1_rep	mRNA	16964827	16970301	.	-	.	ID=Os08t0366000-02;Name=Os08t0366000-02;Locus_id=Os08g0366000;Oryzabase Gene Symbol Synonym(s)=Osppc%2C OSPPC%2C Osppc2a%2C ppc2a;Oryzabase Gene Name Synonym(s)=phosphoenolpyruvate carboxylase%2C phosphoenolpyruvate carboxylase 2a%2C PEPCase 2a;Note=Phosphoenolpyruvate carboxylase.;Transcript_evidence=AK067572 (DDBJ%2C Best hit);ORF_evidence=Q84XH0 (UniProt);GO=Biological Process: tricarboxylic acid cycle (GO:0006099),Biological Process: carbon fixation (GO:0015977),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphoenolpyruvate carboxylase activity (GO:0008964);InterPro=Pyruvate/Phosphoenolpyruvate kinase (IPR015813),Phosphoenolpyruvate carboxylase%2C active site (IPR018129),Phosphoenolpyruvate carboxylase (IPR021135),Phosphoenolpyruvate carboxylase%2C bacterial/plant-type (IPR022805);NIAS_FLcDNA=J013108G24;Oryzabase=15695;Expression=AK067572;TENOR=Os08t0366000-02;KEGG=Os08t0366000-02 (EC:4.1.1.31)
Chr08	irgsp1_rep	five_prime_UTR	16970248	16970301	.	-	.	Parent=Os08t0366000-02
Chr08	irgsp1_rep	CDS	16970083	16970247	.	-	0	Parent=Os08t0366000-02
Chr08	irgsp1_rep	CDS	16968248	16968639	.	-	0	Parent=Os08t0366000-02
Chr08	irgsp1_rep	CDS	16968081	16968165	.	-	1	Parent=Os08t0366000-02
Chr08	irgsp1_rep	CDS	16967666	16967888	.	-	0	Parent=Os08t0366000-02
Chr08	irgsp1_rep	CDS	16967483	16967586	.	-	2	Parent=Os08t0366000-02
Chr08	irgsp1_rep	CDS	16967324	16967411	.	-	0	Parent=Os08t0366000-02
Chr08	irgsp1_rep	CDS	16967082	16967236	.	-	2	Parent=Os08t0366000-02
Chr08	irgsp1_rep	CDS	16965979	16966977	.	-	0	Parent=Os08t0366000-02
Chr08	irgsp1_rep	CDS	16965457	16965843	.	-	0	Parent=Os08t0366000-02
Chr08	irgsp1_rep	CDS	16965035	16965331	.	-	0	Parent=Os08t0366000-02
Chr08	irgsp1_rep	three_prime_UTR	16964827	16965034	.	-	.	Parent=Os08t0366000-02
Chr08	irgsp1_rep	mRNA	16964834	16970023	.	-	.	ID=Os08t0366000-03;Name=Os08t0366000-03;Locus_id=Os08g0366000;Oryzabase Gene Symbol Synonym(s)=Osppc%2C OSPPC%2C Osppc2a%2C ppc2a;Oryzabase Gene Name Synonym(s)=phosphoenolpyruvate carboxylase%2C phosphoenolpyruvate carboxylase 2a%2C PEPCase 2a;Note=Similar to Phosphoenolpyruvate carboxylase.;Transcript_evidence=AK070742 (DDBJ%2C Best hit);ORF_evidence=Q84XH0 (UniProt);GO=Biological Process: tricarboxylic acid cycle (GO:0006099),Biological Process: carbon fixation (GO:0015977),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphoenolpyruvate carboxylase activity (GO:0008964);InterPro=Pyruvate/Phosphoenolpyruvate kinase (IPR015813),Phosphoenolpyruvate carboxylase%2C active site (IPR018129),Phosphoenolpyruvate carboxylase (IPR021135),Phosphoenolpyruvate carboxylase%2C bacterial/plant-type (IPR022805);NIAS_FLcDNA=J023061C12;Oryzabase=15695;Expression=AK070742;TENOR=Os08t0366000-03;KEGG=Os08t0366000-03 (EC:4.1.1.31)
Chr08	irgsp1_rep	five_prime_UTR	16968640	16970023	.	-	.	Parent=Os08t0366000-03
Chr08	irgsp1_rep	CDS	16968248	16968639	.	-	0	Parent=Os08t0366000-03
Chr08	irgsp1_rep	CDS	16968081	16968165	.	-	1	Parent=Os08t0366000-03
Chr08	irgsp1_rep	CDS	16967666	16967888	.	-	0	Parent=Os08t0366000-03
Chr08	irgsp1_rep	CDS	16967483	16967586	.	-	2	Parent=Os08t0366000-03
Chr08	irgsp1_rep	CDS	16967324	16967411	.	-	0	Parent=Os08t0366000-03
Chr08	irgsp1_rep	CDS	16967082	16967236	.	-	2	Parent=Os08t0366000-03
Chr08	irgsp1_rep	CDS	16965979	16966977	.	-	0	Parent=Os08t0366000-03
Chr08	irgsp1_rep	CDS	16965457	16965843	.	-	0	Parent=Os08t0366000-03
Chr08	irgsp1_rep	CDS	16965035	16965331	.	-	0	Parent=Os08t0366000-03
Chr08	irgsp1_rep	three_prime_UTR	16964834	16965034	.	-	.	Parent=Os08t0366000-03
Chr08	irgsp1_rep	mRNA	16964837	16966802	.	-	.	ID=Os08t0366000-04;Name=Os08t0366000-04;Locus_id=Os08g0366000;Oryzabase Gene Symbol Synonym(s)=Osppc%2C OSPPC%2C Osppc2a%2C ppc2a;Oryzabase Gene Name Synonym(s)=phosphoenolpyruvate carboxylase%2C phosphoenolpyruvate carboxylase 2a%2C PEPCase 2a;Note=Similar to Phosphoenolpyruvate carboxylase.;Transcript_evidence=AK061683 (DDBJ%2C Best hit);ORF_evidence=Q84XH0 (UniProt);GO=Biological Process: tricarboxylic acid cycle (GO:0006099),Biological Process: carbon fixation (GO:0015977),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphoenolpyruvate carboxylase activity (GO:0008964);InterPro=Pyruvate/Phosphoenolpyruvate kinase (IPR015813),Phosphoenolpyruvate carboxylase%2C active site (IPR018129),Phosphoenolpyruvate carboxylase (IPR021135);NIAS_FLcDNA=001-037-A07;Oryzabase=15695;Expression=AK061683;TENOR=Os08t0366000-04;KEGG=Os08t0366000-04 (EC:4.1.1.31)
Chr08	irgsp1_rep	five_prime_UTR	16966801	16966802	.	-	.	Parent=Os08t0366000-04
Chr08	irgsp1_rep	CDS	16965979	16966800	.	-	0	Parent=Os08t0366000-04
Chr08	irgsp1_rep	CDS	16965457	16965843	.	-	0	Parent=Os08t0366000-04
Chr08	irgsp1_rep	CDS	16965035	16965331	.	-	0	Parent=Os08t0366000-04
Chr08	irgsp1_rep	three_prime_UTR	16964837	16965034	.	-	.	Parent=Os08t0366000-04
Chr08	irgsp1_rep	mRNA	16965034	16970256	.	+	.	ID=Os08t0366050-00;Name=Os08t0366050-00;Locus_id=Os08g0366050;Note=Hypothetical protein.;Transcript_evidence=tplb0046d07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0366050-00
Chr08	irgsp1_rep	five_prime_UTR	16965034	16965337	.	+	.	Parent=Os08t0366050-00
Chr08	irgsp1_rep	five_prime_UTR	16965463	16965556	.	+	.	Parent=Os08t0366050-00
Chr08	irgsp1_rep	CDS	16965557	16965842	.	+	0	Parent=Os08t0366050-00
Chr08	irgsp1_rep	CDS	16965978	16966237	.	+	2	Parent=Os08t0366050-00
Chr08	irgsp1_rep	three_prime_UTR	16966238	16966992	.	+	.	Parent=Os08t0366050-00
Chr08	irgsp1_rep	three_prime_UTR	16967100	16967308	.	+	.	Parent=Os08t0366050-00
Chr08	irgsp1_rep	three_prime_UTR	16967465	16967570	.	+	.	Parent=Os08t0366050-00
Chr08	irgsp1_rep	three_prime_UTR	16967651	16967888	.	+	.	Parent=Os08t0366050-00
Chr08	irgsp1_rep	three_prime_UTR	16968081	16968142	.	+	.	Parent=Os08t0366050-00
Chr08	irgsp1_rep	three_prime_UTR	16968229	16968640	.	+	.	Parent=Os08t0366050-00
Chr08	irgsp1_rep	three_prime_UTR	16970085	16970256	.	+	.	Parent=Os08t0366050-00
Chr08	irgsp1_rep	mRNA	16982279	16985259	.	+	.	ID=Os08t0366100-01;Name=Os08t0366100-01;Locus_id=Os08g0366100;Oryzabase Gene Symbol Synonym(s)=Edf;Oryzabase Gene Name Synonym(s)=MBF1 transcription factor%2C Endothelial differentiation factor;Note=Similar to Endothelial differentiation-related factor 1 (EDF-1) (Multiprotein bridging factor 1) (MBF1).;Transcript_evidence=AK120339 (DDBJ%2C Best hit),AK061882 (DDBJ%2C Best hit);ORF_evidence=F1DK64 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Helix-turn-helix type 3 (IPR001387),Lambda repressor-like%2C DNA-binding (IPR010982),Multiprotein bridging factor 1%2C N-terminal (IPR013729);NIAS_FLcDNA=J013060M10,001-041-F01;Oryzabase=16189;TENOR=Os08t0366100-01
Chr08	irgsp1_rep	five_prime_UTR	16982279	16982384	.	+	.	Parent=Os08t0366100-01
Chr08	irgsp1_rep	CDS	16982385	16982526	.	+	0	Parent=Os08t0366100-01
Chr08	irgsp1_rep	CDS	16982924	16983007	.	+	2	Parent=Os08t0366100-01
Chr08	irgsp1_rep	CDS	16984656	16984738	.	+	2	Parent=Os08t0366100-01
Chr08	irgsp1_rep	CDS	16984852	16984971	.	+	0	Parent=Os08t0366100-01
Chr08	irgsp1_rep	three_prime_UTR	16984972	16985259	.	+	.	Parent=Os08t0366100-01
Chr08	irgsp1_rep	mRNA	16988501	16991352	.	+	.	ID=Os08t0366200-01;Name=Os08t0366200-01;Locus_id=Os08g0366200;Oryzabase Gene Symbol Synonym(s)=ELF4_Chr.8;Note=Protein of unknown function DUF1313 family protein.;Transcript_evidence=AK103736 (DDBJ%2C Best hit);ORF_evidence=NP_001183932.1 (RefSeq);InterPro=Protein of unknown function DUF1313 (IPR009741);NIAS_FLcDNA=J033138H09;Oryzabase=19304;Expression=AK103736;TENOR=Os08t0366200-01;KEGG=Os08t0366200-01
Chr08	irgsp1_rep	five_prime_UTR	16988501	16988862	.	+	.	Parent=Os08t0366200-01
Chr08	irgsp1_rep	five_prime_UTR	16989533	16989590	.	+	.	Parent=Os08t0366200-01
Chr08	irgsp1_rep	five_prime_UTR	16990639	16990665	.	+	.	Parent=Os08t0366200-01
Chr08	irgsp1_rep	CDS	16990666	16991100	.	+	0	Parent=Os08t0366200-01
Chr08	irgsp1_rep	three_prime_UTR	16991101	16991352	.	+	.	Parent=Os08t0366200-01
Chr08	irgsp1_rep	mRNA	17060223	17065855	.	+	.	ID=Os08t0367300-00;Name=Os08t0367300-00;Locus_id=Os08g0367300;Note=Hypothetical conserved gene.;Transcript_evidence=AK119367 (DDBJ%2C Secondary hit);ORF_evidence=B9FW60 (UniProt);InterPro=Transposase%2C Ptta/En/Spm%2C plant (IPR004252);Expression=AK119367;TENOR=Os08t0367300-00;KEGG=Os08t0367300-00
Chr08	irgsp1_rep	five_prime_UTR	17060223	17060845	.	+	.	Parent=Os08t0367300-00
Chr08	irgsp1_rep	five_prime_UTR	17061168	17061169	.	+	.	Parent=Os08t0367300-00
Chr08	irgsp1_rep	CDS	17061170	17061431	.	+	0	Parent=Os08t0367300-00
Chr08	irgsp1_rep	CDS	17061538	17061806	.	+	2	Parent=Os08t0367300-00
Chr08	irgsp1_rep	CDS	17061903	17062106	.	+	0	Parent=Os08t0367300-00
Chr08	irgsp1_rep	CDS	17062216	17062308	.	+	0	Parent=Os08t0367300-00
Chr08	irgsp1_rep	CDS	17062402	17062497	.	+	0	Parent=Os08t0367300-00
Chr08	irgsp1_rep	CDS	17062581	17062925	.	+	0	Parent=Os08t0367300-00
Chr08	irgsp1_rep	CDS	17063016	17063083	.	+	0	Parent=Os08t0367300-00
Chr08	irgsp1_rep	CDS	17063176	17063260	.	+	1	Parent=Os08t0367300-00
Chr08	irgsp1_rep	CDS	17063348	17063413	.	+	0	Parent=Os08t0367300-00
Chr08	irgsp1_rep	CDS	17063678	17063743	.	+	0	Parent=Os08t0367300-00
Chr08	irgsp1_rep	CDS	17063877	17063942	.	+	0	Parent=Os08t0367300-00
Chr08	irgsp1_rep	CDS	17064040	17064105	.	+	0	Parent=Os08t0367300-00
Chr08	irgsp1_rep	CDS	17064223	17064270	.	+	0	Parent=Os08t0367300-00
Chr08	irgsp1_rep	CDS	17064349	17064411	.	+	0	Parent=Os08t0367300-00
Chr08	irgsp1_rep	CDS	17064497	17064562	.	+	0	Parent=Os08t0367300-00
Chr08	irgsp1_rep	CDS	17064725	17064784	.	+	0	Parent=Os08t0367300-00
Chr08	irgsp1_rep	CDS	17064894	17064959	.	+	0	Parent=Os08t0367300-00
Chr08	irgsp1_rep	CDS	17065130	17065177	.	+	0	Parent=Os08t0367300-00
Chr08	irgsp1_rep	CDS	17065588	17065608	.	+	0	Parent=Os08t0367300-00
Chr08	irgsp1_rep	three_prime_UTR	17065609	17065855	.	+	.	Parent=Os08t0367300-00
Chr08	irgsp1_rep	mRNA	17074831	17077208	.	-	.	ID=Os08t0367400-01;Name=Os08t0367400-01;Locus_id=Os08g0367400;Note=Hypothetical protein.;Transcript_evidence=AK103789 (DDBJ%2C Best hit),AK070708 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033145K21,J023060D19;Expression=AK103789;TENOR=Os08t0367400-01;KEGG=Os08t0367400-01
Chr08	irgsp1_rep	five_prime_UTR	17076561	17077208	.	-	.	Parent=Os08t0367400-01
Chr08	irgsp1_rep	CDS	17076222	17076560	.	-	0	Parent=Os08t0367400-01
Chr08	irgsp1_rep	three_prime_UTR	17074831	17076221	.	-	.	Parent=Os08t0367400-01
Chr08	irgsp1_rep	mRNA	17097358	17110731	.	-	.	ID=Os08t0367625-00;Name=Os08t0367625-00;Locus_id=Os08g0367625;Note=Similar to coatomer subunit delta.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001149384.1 (RefSeq);TENOR=Os08t0367625-00
Chr08	irgsp1_rep	CDS	17110645	17110731	.	-	0	Parent=Os08t0367625-00
Chr08	irgsp1_rep	CDS	17110508	17110564	.	-	0	Parent=Os08t0367625-00
Chr08	irgsp1_rep	CDS	17097358	17097894	.	-	0	Parent=Os08t0367625-00
Chr08	irgsp1_rep	mRNA	17116561	17121280	.	-	.	ID=Os08t0367850-01;Name=Os08t0367850-01;Locus_id=Os08g0367850;Note=Hypothetical gene.;Transcript_evidence=AK288866 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090078B06;TENOR=Os08t0367850-01;KEGG=Os08t0367850-01
Chr08	irgsp1_rep	five_prime_UTR	17120043	17121280	.	-	.	Parent=Os08t0367850-01
Chr08	irgsp1_rep	CDS	17119800	17120042	.	-	0	Parent=Os08t0367850-01
Chr08	irgsp1_rep	three_prime_UTR	17116561	17119799	.	-	.	Parent=Os08t0367850-01
Chr08	irgsp1_rep	mRNA	17121810	17127723	.	-	.	ID=Os08t0368000-01;Name=Os08t0368000-01;Locus_id=Os08g0368000;Note=Similar to Coatomer delta subunit (Delta-coat protein) (Delta-COP).;Transcript_evidence=AK106813 (DDBJ%2C Best hit);ORF_evidence=NP_001104961.1 (RefSeq);GO=Biological Process: transport (GO:0006810);InterPro=Longin-like (IPR011012),AP complex%2C mu/sigma subunit (IPR022775);NIAS_FLcDNA=002-116-C12;Expression=AK106813;TENOR=Os08t0368000-01;KEGG=Os08t0368000-01
Chr08	irgsp1_rep	five_prime_UTR	17127547	17127723	.	-	.	Parent=Os08t0368000-01
Chr08	irgsp1_rep	five_prime_UTR	17126994	17127051	.	-	.	Parent=Os08t0368000-01
Chr08	irgsp1_rep	CDS	17126991	17126993	.	-	0	Parent=Os08t0368000-01
Chr08	irgsp1_rep	CDS	17126807	17126846	.	-	0	Parent=Os08t0368000-01
Chr08	irgsp1_rep	CDS	17126227	17126450	.	-	2	Parent=Os08t0368000-01
Chr08	irgsp1_rep	CDS	17125458	17125745	.	-	0	Parent=Os08t0368000-01
Chr08	irgsp1_rep	three_prime_UTR	17124880	17125457	.	-	.	Parent=Os08t0368000-01
Chr08	irgsp1_rep	three_prime_UTR	17123809	17124113	.	-	.	Parent=Os08t0368000-01
Chr08	irgsp1_rep	three_prime_UTR	17123234	17123420	.	-	.	Parent=Os08t0368000-01
Chr08	irgsp1_rep	three_prime_UTR	17123007	17123160	.	-	.	Parent=Os08t0368000-01
Chr08	irgsp1_rep	three_prime_UTR	17122486	17122548	.	-	.	Parent=Os08t0368000-01
Chr08	irgsp1_rep	three_prime_UTR	17122295	17122391	.	-	.	Parent=Os08t0368000-01
Chr08	irgsp1_rep	three_prime_UTR	17121810	17122214	.	-	.	Parent=Os08t0368000-01
Chr08	irgsp1_rep	mRNA	17122109	17126452	.	+	.	ID=Os08t0368166-00;Name=Os08t0368166-00;Locus_id=Os08g0368166;Note=Hypothetical protein.;Transcript_evidence=tplb0060a06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0368166-00
Chr08	irgsp1_rep	five_prime_UTR	17122109	17122210	.	+	.	Parent=Os08t0368166-00
Chr08	irgsp1_rep	five_prime_UTR	17122291	17122399	.	+	.	Parent=Os08t0368166-00
Chr08	irgsp1_rep	five_prime_UTR	17122962	17123177	.	+	.	Parent=Os08t0368166-00
Chr08	irgsp1_rep	five_prime_UTR	17123249	17123420	.	+	.	Parent=Os08t0368166-00
Chr08	irgsp1_rep	five_prime_UTR	17123809	17124123	.	+	.	Parent=Os08t0368166-00
Chr08	irgsp1_rep	five_prime_UTR	17124895	17125027	.	+	.	Parent=Os08t0368166-00
Chr08	irgsp1_rep	CDS	17125028	17125045	.	+	0	Parent=Os08t0368166-00
Chr08	irgsp1_rep	CDS	17125503	17125733	.	+	0	Parent=Os08t0368166-00
Chr08	irgsp1_rep	CDS	17126217	17126288	.	+	0	Parent=Os08t0368166-00
Chr08	irgsp1_rep	three_prime_UTR	17126289	17126452	.	+	.	Parent=Os08t0368166-00
Chr08	irgsp1_rep	mRNA	17136399	17138576	.	+	.	ID=Os08t0368333-00;Name=Os08t0368333-00;Locus_id=Os08g0368333;Note=Similar to cDNA clone:002-149-F01%2C full insert sequence.;Transcript_evidence=AK107016 (DDBJ%2C Secondary hit);ORF_evidence=Q336R1 (UniProt);Expression=AK107016;TENOR=Os08t0368333-00;KEGG=Os08t0368333-00
Chr08	irgsp1_rep	five_prime_UTR	17136399	17136633	.	+	.	Parent=Os08t0368333-00
Chr08	irgsp1_rep	five_prime_UTR	17136739	17136822	.	+	.	Parent=Os08t0368333-00
Chr08	irgsp1_rep	five_prime_UTR	17137037	17137824	.	+	.	Parent=Os08t0368333-00
Chr08	irgsp1_rep	five_prime_UTR	17137912	17137944	.	+	.	Parent=Os08t0368333-00
Chr08	irgsp1_rep	CDS	17137945	17138454	.	+	0	Parent=Os08t0368333-00
Chr08	irgsp1_rep	three_prime_UTR	17138455	17138576	.	+	.	Parent=Os08t0368333-00
Chr08	irgsp1_rep	mRNA	17191623	17195558	.	-	.	ID=Os08t0368777-00;Name=Os08t0368777-00;Locus_id=Os08g0368777;Note=Hypothetical protein.;Transcript_evidence=tplb0035n15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0368777-00
Chr08	irgsp1_rep	CDS	17195349	17195558	.	-	0	Parent=Os08t0368777-00
Chr08	irgsp1_rep	CDS	17195070	17195243	.	-	0	Parent=Os08t0368777-00
Chr08	irgsp1_rep	three_prime_UTR	17195050	17195069	.	-	.	Parent=Os08t0368777-00
Chr08	irgsp1_rep	three_prime_UTR	17194857	17194926	.	-	.	Parent=Os08t0368777-00
Chr08	irgsp1_rep	three_prime_UTR	17194700	17194784	.	-	.	Parent=Os08t0368777-00
Chr08	irgsp1_rep	three_prime_UTR	17194543	17194600	.	-	.	Parent=Os08t0368777-00
Chr08	irgsp1_rep	three_prime_UTR	17194213	17194315	.	-	.	Parent=Os08t0368777-00
Chr08	irgsp1_rep	three_prime_UTR	17194033	17194099	.	-	.	Parent=Os08t0368777-00
Chr08	irgsp1_rep	three_prime_UTR	17193681	17193931	.	-	.	Parent=Os08t0368777-00
Chr08	irgsp1_rep	three_prime_UTR	17193284	17193346	.	-	.	Parent=Os08t0368777-00
Chr08	irgsp1_rep	three_prime_UTR	17192691	17192802	.	-	.	Parent=Os08t0368777-00
Chr08	irgsp1_rep	three_prime_UTR	17192382	17192551	.	-	.	Parent=Os08t0368777-00
Chr08	irgsp1_rep	three_prime_UTR	17191854	17191961	.	-	.	Parent=Os08t0368777-00
Chr08	irgsp1_rep	three_prime_UTR	17191623	17191711	.	-	.	Parent=Os08t0368777-00
Chr08	irgsp1_rep	mRNA	17193679	17195863	.	+	.	ID=Os08t0369000-01;Name=Os08t0369000-01;Locus_id=Os08g0369000;Note=Similar to Permease 1.;Transcript_evidence=AK106407 (DDBJ%2C Best hit);ORF_evidence=B6U234 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Xanthine/uracil/vitamin C permease (IPR006043);NIAS_FLcDNA=002-102-H04;Expression=AK106407;TENOR=Os08t0369000-01;KEGG=Os08t0369000-01
Chr08	irgsp1_rep	five_prime_UTR	17193679	17193679	.	+	.	Parent=Os08t0369000-01
Chr08	irgsp1_rep	CDS	17193680	17193924	.	+	0	Parent=Os08t0369000-01
Chr08	irgsp1_rep	CDS	17194026	17194122	.	+	1	Parent=Os08t0369000-01
Chr08	irgsp1_rep	CDS	17194232	17194318	.	+	0	Parent=Os08t0369000-01
Chr08	irgsp1_rep	CDS	17194546	17194604	.	+	0	Parent=Os08t0369000-01
Chr08	irgsp1_rep	CDS	17194704	17194795	.	+	1	Parent=Os08t0369000-01
Chr08	irgsp1_rep	CDS	17194872	17194949	.	+	2	Parent=Os08t0369000-01
Chr08	irgsp1_rep	CDS	17195074	17195234	.	+	2	Parent=Os08t0369000-01
Chr08	irgsp1_rep	CDS	17195337	17195549	.	+	0	Parent=Os08t0369000-01
Chr08	irgsp1_rep	three_prime_UTR	17195550	17195863	.	+	.	Parent=Os08t0369000-01
Chr08	irgsp1_rep	mRNA	17196097	17196145	.	-	.	ID=Os08t0369066-00;Name=Os08t0369066-00;Locus_id=Os08g0369066;Note=Non-protein coding transcript.;Transcript_evidence=EU943375 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0369066-00
Chr08	irgsp1_rep	exon	17196097	17196145	.	-	.	Parent=Os08t0369066-00
Chr08	irgsp1_rep	mRNA	17196261	17196341	.	-	.	ID=Os08t0369132-00;Name=Os08t0369132-00;Locus_id=Os08g0369132;Note=Non-protein coding transcript.;Transcript_evidence=EU943375 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0369132-00
Chr08	irgsp1_rep	exon	17196261	17196341	.	-	.	Parent=Os08t0369132-00
Chr08	irgsp1_rep	mRNA	17199310	17203078	.	+	.	ID=Os08t0369200-01;Name=Os08t0369200-01;Locus_id=Os08g0369200;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK105602 (DDBJ%2C Best hit);ORF_evidence=A2YUL4 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=001-200-A07;Expression=AK105602;TENOR=Os08t0369200-01;KEGG=Os08t0369200-01
Chr08	irgsp1_rep	five_prime_UTR	17199310	17199363	.	+	.	Parent=Os08t0369200-01
Chr08	irgsp1_rep	CDS	17199364	17199933	.	+	0	Parent=Os08t0369200-01
Chr08	irgsp1_rep	CDS	17201189	17202154	.	+	0	Parent=Os08t0369200-01
Chr08	irgsp1_rep	three_prime_UTR	17202155	17203078	.	+	.	Parent=Os08t0369200-01
Chr08	irgsp1_rep	mRNA	17204994	17206945	.	-	.	ID=Os08t0369300-00;Name=Os08t0369300-00;Locus_id=Os08g0369300;Note=Similar to Actin-related protein 2.;Transcript_evidence=EU947038 (DDBJ);ORF_evidence=Q6Z256 (UniProt);InterPro=Actin-like (IPR004000);TENOR=Os08t0369300-00;KEGG=Os08t0369300-00
Chr08	irgsp1_rep	CDS	17206787	17206945	.	-	0	Parent=Os08t0369300-00
Chr08	irgsp1_rep	CDS	17206648	17206716	.	-	0	Parent=Os08t0369300-00
Chr08	irgsp1_rep	CDS	17206453	17206536	.	-	0	Parent=Os08t0369300-00
Chr08	irgsp1_rep	CDS	17205817	17205875	.	-	0	Parent=Os08t0369300-00
Chr08	irgsp1_rep	CDS	17205524	17205590	.	-	1	Parent=Os08t0369300-00
Chr08	irgsp1_rep	CDS	17205260	17205343	.	-	0	Parent=Os08t0369300-00
Chr08	irgsp1_rep	CDS	17204994	17205074	.	-	0	Parent=Os08t0369300-00
Chr08	irgsp1_rep	mRNA	17211332	17213193	.	+	.	ID=Os08t0369400-01;Name=Os08t0369400-01;Locus_id=Os08g0369400;Note=Ankyrin repeat containing protein.;Transcript_evidence=AK241168 (DDBJ%2C Best hit);ORF_evidence=NP_001175541.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J065116P10;TENOR=Os08t0369400-01;KEGG=Os08t0369400-01
Chr08	irgsp1_rep	five_prime_UTR	17211332	17211333	.	+	.	Parent=Os08t0369400-01
Chr08	irgsp1_rep	CDS	17211334	17211939	.	+	0	Parent=Os08t0369400-01
Chr08	irgsp1_rep	three_prime_UTR	17211940	17212085	.	+	.	Parent=Os08t0369400-01
Chr08	irgsp1_rep	three_prime_UTR	17212554	17213193	.	+	.	Parent=Os08t0369400-01
Chr08	irgsp1_rep	mRNA	17217593	17221237	.	-	.	ID=Os08t0369600-01;Name=Os08t0369600-01;Locus_id=Os08g0369600;Note=Similar to Cysteine-rich polycomb-like protein.;Transcript_evidence=AK071493 (DDBJ%2C Best hit);ORF_evidence=B9G0L9 (UniProt);InterPro=Tesmin/TSO1-like%2C CXC (IPR005172);NIAS_FLcDNA=J023097M11;Expression=AK071493;TENOR=Os08t0369600-01;KEGG=Os08t0369600-01
Chr08	irgsp1_rep	five_prime_UTR	17221051	17221237	.	-	.	Parent=Os08t0369600-01
Chr08	irgsp1_rep	five_prime_UTR	17220625	17220649	.	-	.	Parent=Os08t0369600-01
Chr08	irgsp1_rep	CDS	17220182	17220624	.	-	0	Parent=Os08t0369600-01
Chr08	irgsp1_rep	CDS	17219765	17219872	.	-	1	Parent=Os08t0369600-01
Chr08	irgsp1_rep	CDS	17219040	17219211	.	-	1	Parent=Os08t0369600-01
Chr08	irgsp1_rep	CDS	17217705	17218091	.	-	0	Parent=Os08t0369600-01
Chr08	irgsp1_rep	three_prime_UTR	17217593	17217704	.	-	.	Parent=Os08t0369600-01
Chr08	irgsp1_rep	mRNA	17225171	17228033	.	+	.	ID=Os08t0369700-01;Name=Os08t0369700-01;Locus_id=Os08g0369700;CGSNL Gene Symbol=ISC10;CGSNL Gene Name=IRON-SULFUR CLUSTER PROTEIN 10;Oryzabase Gene Symbol Synonym(s)=OsISC10;Oryzabase Gene Name Synonym(s)=Iron-sulfur cluster protein 10;Note=FeS cluster insertion domain containing protein.;Transcript_evidence=AK287500 (DDBJ%2C Best hit);ORF_evidence=NP_001148399.1 (RefSeq);GO=Biological Process: iron-sulfur cluster assembly (GO:0016226),Molecular Function: structural molecule activity (GO:0005198),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=FeS cluster biogenesis (IPR000361),FeS cluster insertion (IPR016092);NIAS_FLcDNA=J043034C21;Oryzabase=13425;TENOR=Os08t0369700-01;KEGG=Os08t0369700-01
Chr08	irgsp1_rep	five_prime_UTR	17225171	17225377	.	+	.	Parent=Os08t0369700-01
Chr08	irgsp1_rep	CDS	17225378	17225575	.	+	0	Parent=Os08t0369700-01
Chr08	irgsp1_rep	CDS	17226837	17226967	.	+	0	Parent=Os08t0369700-01
Chr08	irgsp1_rep	CDS	17227150	17227258	.	+	1	Parent=Os08t0369700-01
Chr08	irgsp1_rep	CDS	17227728	17227790	.	+	0	Parent=Os08t0369700-01
Chr08	irgsp1_rep	three_prime_UTR	17227791	17228033	.	+	.	Parent=Os08t0369700-01
Chr08	irgsp1_rep	mRNA	17228974	17235520	.	-	.	ID=Os08t0369800-01;Name=Os08t0369800-01;Locus_id=Os08g0369800;Oryzabase Gene Symbol Synonym(s)=OsCCD8d;Oryzabase Gene Name Synonym(s)=carotenoid cleavage dioxygenase 8d;Note=Hypothetical conserved gene.;Transcript_evidence=AK241374 (DDBJ%2C Best hit);ORF_evidence=Q6Z251 (UniProt);InterPro=Carotenoid oxygenase (IPR004294);NIAS_FLcDNA=J065155A15;Oryzabase=18343;TENOR=Os08t0369800-01;KEGG=Os08t0369800-01
Chr08	irgsp1_rep	five_prime_UTR	17235519	17235520	.	-	.	Parent=Os08t0369800-01
Chr08	irgsp1_rep	CDS	17235390	17235518	.	-	0	Parent=Os08t0369800-01
Chr08	irgsp1_rep	CDS	17235157	17235300	.	-	0	Parent=Os08t0369800-01
Chr08	irgsp1_rep	CDS	17234946	17235048	.	-	0	Parent=Os08t0369800-01
Chr08	irgsp1_rep	CDS	17234288	17234832	.	-	2	Parent=Os08t0369800-01
Chr08	irgsp1_rep	CDS	17233608	17233686	.	-	0	Parent=Os08t0369800-01
Chr08	irgsp1_rep	CDS	17233440	17233521	.	-	2	Parent=Os08t0369800-01
Chr08	irgsp1_rep	CDS	17232396	17232462	.	-	1	Parent=Os08t0369800-01
Chr08	irgsp1_rep	three_prime_UTR	17232180	17232395	.	-	.	Parent=Os08t0369800-01
Chr08	irgsp1_rep	three_prime_UTR	17231175	17231329	.	-	.	Parent=Os08t0369800-01
Chr08	irgsp1_rep	three_prime_UTR	17231041	17231098	.	-	.	Parent=Os08t0369800-01
Chr08	irgsp1_rep	three_prime_UTR	17229887	17229951	.	-	.	Parent=Os08t0369800-01
Chr08	irgsp1_rep	three_prime_UTR	17229623	17229778	.	-	.	Parent=Os08t0369800-01
Chr08	irgsp1_rep	three_prime_UTR	17228974	17229277	.	-	.	Parent=Os08t0369800-01
Chr08	irgsp1_rep	mRNA	17299388	17323234	.	-	.	ID=Os08t0371200-01;Name=Os08t0371200-01;Locus_id=Os08g0371200;Note=Carotenoid oxygenase domain containing protein.;Transcript_evidence=AK120474 (DDBJ%2C Best hit);ORF_evidence=A3BSJ1 (UniProt);InterPro=Carotenoid oxygenase (IPR004294);NIAS_FLcDNA=J013110P15;TENOR=Os08t0371200-01
Chr08	irgsp1_rep	five_prime_UTR	17323231	17323234	.	-	.	Parent=Os08t0371200-01
Chr08	irgsp1_rep	CDS	17323102	17323230	.	-	0	Parent=Os08t0371200-01
Chr08	irgsp1_rep	CDS	17322696	17322842	.	-	0	Parent=Os08t0371200-01
Chr08	irgsp1_rep	CDS	17322016	17322118	.	-	0	Parent=Os08t0371200-01
Chr08	irgsp1_rep	CDS	17299585	17299640	.	-	2	Parent=Os08t0371200-01
Chr08	irgsp1_rep	three_prime_UTR	17299388	17299584	.	-	.	Parent=Os08t0371200-01
Chr08	irgsp1_rep	mRNA	17338752	17351892	.	-	.	ID=Os08t0371608-00;Name=Os08t0371608-00;Locus_id=Os08g0371608;Note=Similar to carotenoid cleavage dioxygenase.;Transcript_evidence=AK248931 (DDBJ);ORF_evidence=NP_001152477.1 (RefSeq);InterPro=Carotenoid oxygenase (IPR004294);TENOR=Os08t0371608-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	17351722	17351892	.	-	0	Parent=Os08t0371608-00
Chr08	irgsp1_rep	CDS	17347728	17347830	.	-	0	Parent=Os08t0371608-00
Chr08	irgsp1_rep	CDS	17347252	17347514	.	-	2	Parent=Os08t0371608-00
Chr08	irgsp1_rep	CDS	17346095	17346274	.	-	0	Parent=Os08t0371608-00
Chr08	irgsp1_rep	CDS	17345409	17345487	.	-	0	Parent=Os08t0371608-00
Chr08	irgsp1_rep	CDS	17345232	17345313	.	-	2	Parent=Os08t0371608-00
Chr08	irgsp1_rep	CDS	17340709	17340771	.	-	1	Parent=Os08t0371608-00
Chr08	irgsp1_rep	CDS	17340488	17340626	.	-	1	Parent=Os08t0371608-00
Chr08	irgsp1_rep	CDS	17339854	17340145	.	-	0	Parent=Os08t0371608-00
Chr08	irgsp1_rep	CDS	17339530	17339582	.	-	2	Parent=Os08t0371608-00
Chr08	irgsp1_rep	CDS	17339273	17339428	.	-	0	Parent=Os08t0371608-00
Chr08	irgsp1_rep	CDS	17338847	17338897	.	-	0	Parent=Os08t0371608-00
Chr08	irgsp1_rep	three_prime_UTR	17338752	17338846	.	-	.	Parent=Os08t0371608-00
Chr08	irgsp1_rep	mRNA	17383733	17387736	.	+	.	ID=Os08t0372166-00;Name=Os08t0372166-00;Locus_id=Os08g0372166;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0038k01 (Wheat FLcDNA);ORF_evidence=Q6ZB23 (UniProt);TENOR=Os08t0372166-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	17383733	17383741	.	+	.	Parent=Os08t0372166-00
Chr08	irgsp1_rep	CDS	17383742	17383881	.	+	0	Parent=Os08t0372166-00
Chr08	irgsp1_rep	CDS	17384474	17384879	.	+	1	Parent=Os08t0372166-00
Chr08	irgsp1_rep	three_prime_UTR	17384880	17384992	.	+	.	Parent=Os08t0372166-00
Chr08	irgsp1_rep	three_prime_UTR	17387260	17387736	.	+	.	Parent=Os08t0372166-00
Chr08	irgsp1_rep	mRNA	17407409	17410213	.	+	.	ID=Os08t0372401-01;Name=Os08t0372401-01;Locus_id=Os08g0372401;Note=Non-protein coding transcript.;Transcript_evidence=AK288876 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090078P15;TENOR=Os08t0372401-01
Chr08	irgsp1_rep	exon	17407409	17410213	.	+	.	Parent=Os08t0372401-01
Chr08	irgsp1_rep	mRNA	17427398	17431448	.	+	.	ID=Os08t0372700-00;Name=Os08t0372700-00;Locus_id=Os08g0372700;Note=Hypothetical conserved gene.;Transcript_evidence=AK365151 (DDBJ);ORF_evidence=Q6ZB32 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os08t0372700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	17427398	17428218	.	+	0	Parent=Os08t0372700-00
Chr08	irgsp1_rep	CDS	17429533	17431441	.	+	1	Parent=Os08t0372700-00
Chr08	irgsp1_rep	three_prime_UTR	17431442	17431448	.	+	.	Parent=Os08t0372700-00
Chr08	irgsp1_rep	mRNA	17439654	17443724	.	-	.	ID=Os08t0372900-01;Name=Os08t0372900-01;Locus_id=Os08g0372900;Note=Similar to Rhodopsin (Fragment).;Transcript_evidence=AK073868 (DDBJ%2C Best hit);ORF_evidence=B8BAA0 (UniProt);NIAS_FLcDNA=J033074P08;Expression=AK073868;TENOR=Os08t0372900-01;KEGG=Os08t0372900-01
Chr08	irgsp1_rep	five_prime_UTR	17443649	17443724	.	-	.	Parent=Os08t0372900-01
Chr08	irgsp1_rep	CDS	17443153	17443648	.	-	0	Parent=Os08t0372900-01
Chr08	irgsp1_rep	CDS	17441569	17441853	.	-	2	Parent=Os08t0372900-01
Chr08	irgsp1_rep	CDS	17439735	17440120	.	-	2	Parent=Os08t0372900-01
Chr08	irgsp1_rep	three_prime_UTR	17439654	17439734	.	-	.	Parent=Os08t0372900-01
Chr08	irgsp1_rep	mRNA	17439595	17443682	.	-	.	ID=Os08t0372900-02;Name=Os08t0372900-02;Locus_id=Os08g0372900;Note=Similar to Rhodopsin (Fragment).;Transcript_evidence=AK102881 (DDBJ%2C Best hit);ORF_evidence=B8BAA0 (UniProt);NIAS_FLcDNA=J033112H01;Expression=AK102881;TENOR=Os08t0372900-02;KEGG=Os08t0372900-02
Chr08	irgsp1_rep	five_prime_UTR	17443649	17443682	.	-	.	Parent=Os08t0372900-02
Chr08	irgsp1_rep	CDS	17443153	17443648	.	-	0	Parent=Os08t0372900-02
Chr08	irgsp1_rep	CDS	17441569	17441853	.	-	2	Parent=Os08t0372900-02
Chr08	irgsp1_rep	CDS	17439735	17440120	.	-	2	Parent=Os08t0372900-02
Chr08	irgsp1_rep	three_prime_UTR	17439595	17439734	.	-	.	Parent=Os08t0372900-02
Chr08	irgsp1_rep	mRNA	17451964	17455703	.	+	.	ID=Os08t0373000-00;Name=Os08t0373000-00;Locus_id=Os08g0373000;Note=Hypothetical conserved gene.;Transcript_evidence=AK373939 (DDBJ);ORF_evidence=Q6ZD17 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os08t0373000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	17451964	17451967	.	+	.	Parent=Os08t0373000-00
Chr08	irgsp1_rep	CDS	17451968	17452788	.	+	0	Parent=Os08t0373000-00
Chr08	irgsp1_rep	CDS	17453765	17455703	.	+	1	Parent=Os08t0373000-00
Chr08	irgsp1_rep	mRNA	17470308	17471234	.	-	.	ID=Os08t0373400-00;Name=Os08t0373400-00;Locus_id=Os08g0373400;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001061662.1 (RefSeq);TENOR=Os08t0373400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	17470308	17471234	.	-	0	Parent=Os08t0373400-00
Chr08	irgsp1_rep	mRNA	17505612	17506537	.	+	.	ID=Os08t0373900-01;Name=Os08t0373900-01;Locus_id=Os08g0373900;Note=Hypothetical conserved gene.;Transcript_evidence=AK318522 (DDBJ%2C Best hit);ORF_evidence=Q6ZD11 (UniProt);NIAS_FLcDNA=J065024N11;TENOR=Os08t0373900-01
Chr08	irgsp1_rep	five_prime_UTR	17505612	17506029	.	+	.	Parent=Os08t0373900-01
Chr08	irgsp1_rep	CDS	17506030	17506057	.	+	0	Parent=Os08t0373900-01
Chr08	irgsp1_rep	CDS	17506135	17506381	.	+	2	Parent=Os08t0373900-01
Chr08	irgsp1_rep	CDS	17506460	17506537	.	+	1	Parent=Os08t0373900-01
Chr08	irgsp1_rep	mRNA	17510752	17511689	.	-	.	ID=Os08t0374000-01;Name=Os08t0374000-01;Locus_id=Os08g0374000;Oryzabase Gene Symbol Synonym(s)=OsBetvI%2C BetvI;Oryzabase Gene Name Synonym(s)=pathogenesis-related BetvI family protein;Note=Bet v I allergen family protein.;Transcript_evidence=AK103189 (DDBJ%2C Best hit);ORF_evidence=Q71HN3 (UniProt);GO=Biological Process: defense response (GO:0006952),Biological Process: response to biotic stimulus (GO:0009607);InterPro=Bet v I allergen (IPR000916),START-like domain (IPR023393);NIAS_FLcDNA=J033121M18;Oryzabase=22335;Expression=AK103189;TENOR=Os08t0374000-01;KEGG=Os08t0374000-01
Chr08	irgsp1_rep	five_prime_UTR	17511597	17511689	.	-	.	Parent=Os08t0374000-01
Chr08	irgsp1_rep	CDS	17511425	17511596	.	-	0	Parent=Os08t0374000-01
Chr08	irgsp1_rep	CDS	17510996	17511279	.	-	2	Parent=Os08t0374000-01
Chr08	irgsp1_rep	three_prime_UTR	17510752	17510995	.	-	.	Parent=Os08t0374000-01
Chr08	irgsp1_rep	mRNA	17513036	17516058	.	-	.	ID=Os08t0374100-01;Name=Os08t0374100-01;Locus_id=Os08g0374100;CGSNL Gene Symbol=UBC5;CGSNL Gene Name=UBIQUITIN-CONJUGATING ENZYME 5;Oryzabase Gene Symbol Synonym(s)=OsUBC5;Oryzabase Gene Name Synonym(s)=Ubiquitin-conjugating enzyme 5;Note=Similar to Ubiquitin carrier protein.;Transcript_evidence=AK070541 (DDBJ%2C Best hit);ORF_evidence=B9G0M2 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135),Ubiquitin-conjugating enzyme%2C active site (IPR023313);NIAS_FLcDNA=J023056A05;Oryzabase=19553;TENOR=Os08t0374100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	17516058	17516058	.	-	.	Parent=Os08t0374100-01
Chr08	irgsp1_rep	CDS	17515915	17516057	.	-	0	Parent=Os08t0374100-01
Chr08	irgsp1_rep	CDS	17515099	17515211	.	-	1	Parent=Os08t0374100-01
Chr08	irgsp1_rep	CDS	17514788	17514896	.	-	2	Parent=Os08t0374100-01
Chr08	irgsp1_rep	CDS	17514123	17514201	.	-	1	Parent=Os08t0374100-01
Chr08	irgsp1_rep	CDS	17513904	17514020	.	-	0	Parent=Os08t0374100-01
Chr08	irgsp1_rep	CDS	17513529	17513666	.	-	0	Parent=Os08t0374100-01
Chr08	irgsp1_rep	three_prime_UTR	17513036	17513528	.	-	.	Parent=Os08t0374100-01
Chr08	irgsp1_rep	mRNA	17513074	17516033	.	-	.	ID=Os08t0374100-02;Name=Os08t0374100-02;Locus_id=Os08g0374100;CGSNL Gene Symbol=UBC5;CGSNL Gene Name=UBIQUITIN-CONJUGATING ENZYME 5;Oryzabase Gene Symbol Synonym(s)=OsUBC5;Oryzabase Gene Name Synonym(s)=Ubiquitin-conjugating enzyme 5;Note=Similar to Ubiquitin carrier protein.;Transcript_evidence=AK104511 (DDBJ%2C Best hit),AK104158 (DDBJ%2C Best hit);ORF_evidence=B9G0M2 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135),Ubiquitin-conjugating enzyme%2C active site (IPR023313);NIAS_FLcDNA=006-302-H10,006-210-H05;Oryzabase=19553;TENOR=Os08t0374100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	17515915	17516033	.	-	0	Parent=Os08t0374100-02
Chr08	irgsp1_rep	CDS	17515099	17515211	.	-	1	Parent=Os08t0374100-02
Chr08	irgsp1_rep	CDS	17514788	17514896	.	-	2	Parent=Os08t0374100-02
Chr08	irgsp1_rep	CDS	17514123	17514201	.	-	1	Parent=Os08t0374100-02
Chr08	irgsp1_rep	CDS	17513904	17514020	.	-	0	Parent=Os08t0374100-02
Chr08	irgsp1_rep	CDS	17513529	17513666	.	-	0	Parent=Os08t0374100-02
Chr08	irgsp1_rep	three_prime_UTR	17513074	17513528	.	-	.	Parent=Os08t0374100-02
Chr08	irgsp1_rep	mRNA	17518379	17523078	.	-	.	ID=Os08t0374200-01;Name=Os08t0374200-01;Locus_id=Os08g0374200;Note=Similar to Ubiquitin carrier protein.;Transcript_evidence=AK072407 (DDBJ%2C Best hit);ORF_evidence=B8BAA3 (UniProt);InterPro=Protein of unknown function DUF1346 (IPR009782);NIAS_FLcDNA=J023081K18;TENOR=Os08t0374200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	17523077	17523078	.	-	.	Parent=Os08t0374200-01
Chr08	irgsp1_rep	CDS	17522923	17523076	.	-	0	Parent=Os08t0374200-01
Chr08	irgsp1_rep	CDS	17522153	17522221	.	-	2	Parent=Os08t0374200-01
Chr08	irgsp1_rep	CDS	17521994	17522055	.	-	2	Parent=Os08t0374200-01
Chr08	irgsp1_rep	CDS	17521824	17521913	.	-	0	Parent=Os08t0374200-01
Chr08	irgsp1_rep	CDS	17521618	17521739	.	-	0	Parent=Os08t0374200-01
Chr08	irgsp1_rep	CDS	17521530	17521533	.	-	1	Parent=Os08t0374200-01
Chr08	irgsp1_rep	three_prime_UTR	17520145	17521529	.	-	.	Parent=Os08t0374200-01
Chr08	irgsp1_rep	three_prime_UTR	17518379	17518984	.	-	.	Parent=Os08t0374200-01
Chr08	irgsp1_rep	mRNA	17520795	17523073	.	-	.	ID=Os08t0374200-02;Name=Os08t0374200-02;Locus_id=Os08g0374200;Note=Similar to Ubiquitin carrier protein.;Transcript_evidence=AK106935 (DDBJ%2C Best hit);ORF_evidence=B8BAA3 (UniProt);InterPro=Protein of unknown function DUF1346 (IPR009782);NIAS_FLcDNA=002-119-C07;Expression=AK106935;TENOR=Os08t0374200-02;KEGG=Os08t0374200-02
Chr08	irgsp1_rep	five_prime_UTR	17522923	17523073	.	-	.	Parent=Os08t0374200-02
Chr08	irgsp1_rep	five_prime_UTR	17522220	17522221	.	-	.	Parent=Os08t0374200-02
Chr08	irgsp1_rep	CDS	17522153	17522219	.	-	0	Parent=Os08t0374200-02
Chr08	irgsp1_rep	CDS	17521994	17522055	.	-	2	Parent=Os08t0374200-02
Chr08	irgsp1_rep	CDS	17521824	17521913	.	-	0	Parent=Os08t0374200-02
Chr08	irgsp1_rep	CDS	17521618	17521739	.	-	0	Parent=Os08t0374200-02
Chr08	irgsp1_rep	CDS	17521530	17521533	.	-	1	Parent=Os08t0374200-02
Chr08	irgsp1_rep	three_prime_UTR	17520795	17521529	.	-	.	Parent=Os08t0374200-02
Chr08	irgsp1_rep	mRNA	17538431	17540906	.	-	.	ID=Os08t0374400-00;Name=Os08t0374400-00;Locus_id=Os08g0374400;Oryzabase Gene Symbol Synonym(s)=OsDjB9%2C OsSTA211;Oryzabase Gene Name Synonym(s)=DnaJ domain protein B9;Note=Chaperone DnaJ%2C C-terminal domain containing protein.;Transcript_evidence=AK374926 (DDBJ);ORF_evidence=NP_001061666.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Chaperone DnaJ%2C C-terminal (IPR002939),HSP40/DnaJ peptide-binding (IPR008971);Oryzabase=12157;TENOR=Os08t0374400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	17540890	17540906	.	-	.	Parent=Os08t0374400-00
Chr08	irgsp1_rep	CDS	17540210	17540889	.	-	0	Parent=Os08t0374400-00
Chr08	irgsp1_rep	CDS	17538431	17538920	.	-	1	Parent=Os08t0374400-00
Chr08	irgsp1_rep	mRNA	17538468	17540910	.	+	.	ID=Os08t0374500-00;Name=Os08t0374500-00;Locus_id=Os08g0374500;Note=Hypothetical protein.;Transcript_evidence=tplb0026i01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0374500-00
Chr08	irgsp1_rep	five_prime_UTR	17538468	17538554	.	+	.	Parent=Os08t0374500-00
Chr08	irgsp1_rep	CDS	17538555	17538922	.	+	0	Parent=Os08t0374500-00
Chr08	irgsp1_rep	CDS	17540217	17540583	.	+	1	Parent=Os08t0374500-00
Chr08	irgsp1_rep	CDS	17540714	17540722	.	+	0	Parent=Os08t0374500-00
Chr08	irgsp1_rep	three_prime_UTR	17540723	17540910	.	+	.	Parent=Os08t0374500-00
Chr08	irgsp1_rep	mRNA	17558610	17559521	.	-	.	ID=Os08t0374600-00;Name=Os08t0374600-00;Locus_id=Os08g0374600;CGSNL Gene Symbol=RLCK253;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 253;Oryzabase Gene Symbol Synonym(s)=OsRLCK253;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 253;Note=Similar to Receptor kinase-like protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q84PD4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18943;TENOR=Os08t0374600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	17559198	17559521	.	-	0	Parent=Os08t0374600-00
Chr08	irgsp1_rep	CDS	17558610	17558873	.	-	0	Parent=Os08t0374600-00
Chr08	irgsp1_rep	mRNA	17559580	17560192	.	-	.	ID=Os08t0374701-01;Name=Os08t0374701-01;Locus_id=Os08g0374701;CGSNL Gene Symbol=RLCK253;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 253;Oryzabase Gene Symbol Synonym(s)=OsRLCK253;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 253;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=AK072505 (DDBJ%2C Best hit);ORF_evidence=Q2QQC1 (UniProt);NIAS_FLcDNA=J023128H01;Oryzabase=18943;Expression=AK072505;TENOR=Os08t0374701-01;KEGG=Os08t0374701-01
Chr08	irgsp1_rep	five_prime_UTR	17560163	17560192	.	-	.	Parent=Os08t0374701-01
Chr08	irgsp1_rep	CDS	17559647	17560162	.	-	0	Parent=Os08t0374701-01
Chr08	irgsp1_rep	three_prime_UTR	17559580	17559646	.	-	.	Parent=Os08t0374701-01
Chr08	irgsp1_rep	mRNA	17570086	17576402	.	-	.	ID=Os08t0374800-01;Name=Os08t0374800-01;Locus_id=Os08g0374800;RAP-DB Gene Symbol Synonym(s)=Osfc24%2C OsUGE2%2C FC24/OsUGE2;RAP-DB Gene Name Synonym(s)=fragile culm 24%2C UDP-glucose epimerase 2;CGSNL Gene Symbol=FC24;CGSNL Gene Name=FRAGILE CULM 24;Oryzabase Gene Symbol Synonym(s)=OsUGE2%2C UGE2%2C OsFC24;Oryzabase Gene Name Synonym(s)=UDP-glucose epimerase 2%2C fragile culm 24;Note=UDP-glucose epimerase%2C Modulation of cellulose biosynthesis and wall assembly%2C Cell wall formation and photosynthesis;Transcript_evidence=AK066269;ORF_evidence=Q6ZDJ7;GO=Biological Process: galactose metabolic process (GO:0006012),Molecular Function: UDP-glucose 4-epimerase activity (GO:0003978);InterPro=NAD(P)-binding domain superfamily (IPR036291),UDP-glucose 4-epimerase (IPR005886),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013059D16;Manual Curation=February 18%2C 2020;Literature_PMID=32064495;Oryzabase=12411;Expression=AK066269;TENOR=Os08t0374800-01;KEGG=Os08t0374800-01 (EC:5.1.3.2%2C EC:5.1.3.3);Subcellular location=cytoplasm (GO:0005737)
Chr08	irgsp1_rep	five_prime_UTR	17576154	17576402	.	-	.	Parent=Os08t0374800-01
Chr08	irgsp1_rep	CDS	17575944	17576153	.	-	0	Parent=Os08t0374800-01
Chr08	irgsp1_rep	CDS	17573322	17573371	.	-	0	Parent=Os08t0374800-01
Chr08	irgsp1_rep	CDS	17573060	17573195	.	-	1	Parent=Os08t0374800-01
Chr08	irgsp1_rep	CDS	17572795	17572896	.	-	0	Parent=Os08t0374800-01
Chr08	irgsp1_rep	CDS	17572476	17572703	.	-	0	Parent=Os08t0374800-01
Chr08	irgsp1_rep	CDS	17571660	17571741	.	-	0	Parent=Os08t0374800-01
Chr08	irgsp1_rep	CDS	17571183	17571265	.	-	2	Parent=Os08t0374800-01
Chr08	irgsp1_rep	CDS	17570806	17570897	.	-	0	Parent=Os08t0374800-01
Chr08	irgsp1_rep	CDS	17570487	17570730	.	-	1	Parent=Os08t0374800-01
Chr08	irgsp1_rep	three_prime_UTR	17570086	17570486	.	-	.	Parent=Os08t0374800-01
Chr08	irgsp1_rep	mRNA	17581065	17583130	.	-	.	ID=Os08t0374900-00;Name=Os08t0374900-00;Locus_id=Os08g0374900;Note=Conserved hypothetical protein.;Transcript_evidence=AK373564 (DDBJ);ORF_evidence=NP_001061669.1 (RefSeq);TENOR=Os08t0374900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	17582807	17583130	.	-	0	Parent=Os08t0374900-00
Chr08	irgsp1_rep	CDS	17582580	17582702	.	-	0	Parent=Os08t0374900-00
Chr08	irgsp1_rep	CDS	17582386	17582470	.	-	0	Parent=Os08t0374900-00
Chr08	irgsp1_rep	CDS	17581106	17581275	.	-	2	Parent=Os08t0374900-00
Chr08	irgsp1_rep	three_prime_UTR	17581065	17581105	.	-	.	Parent=Os08t0374900-00
Chr08	irgsp1_rep	mRNA	17613571	17614371	.	+	.	ID=Os08t0375400-01;Name=Os08t0375400-01;Locus_id=Os08g0375400;Note=Plant disease resistance response protein family protein.;Transcript_evidence=AK108186 (DDBJ%2C Best hit);ORF_evidence=NP_001159086.1 (RefSeq);InterPro=Plant disease resistance response protein (IPR004265);NIAS_FLcDNA=002-140-B09;Expression=AK108186;TENOR=Os08t0375400-01;KEGG=Os08t0375400-01
Chr08	irgsp1_rep	five_prime_UTR	17613571	17613574	.	+	.	Parent=Os08t0375400-01
Chr08	irgsp1_rep	CDS	17613575	17614198	.	+	0	Parent=Os08t0375400-01
Chr08	irgsp1_rep	three_prime_UTR	17614199	17614371	.	+	.	Parent=Os08t0375400-01
Chr08	irgsp1_rep	mRNA	17617874	17618498	.	+	.	ID=Os08t0375500-00;Name=Os08t0375500-00;Locus_id=Os08g0375500;Oryzabase Gene Symbol Synonym(s)=OSK25;Oryzabase Gene Name Synonym(s)=S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 25%2C Oryza sativa SKP1-like gene 25;Note=Similar to Skp1-like protein 2.;Transcript_evidence=AY600992 (DDBJ%2C Secondary hit);ORF_evidence=A0ELU6 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);InterPro=SKP1 component (IPR001232),BTB/POZ fold (IPR011333),SKP1 component%2C dimerisation (IPR016072),SKP1 component%2C POZ (IPR016073),E3 ubiquitin ligase%2C SCF complex%2C Skp subunit (IPR016897);Oryzabase=18452;Expression=AY600992;TENOR=Os08t0375500-00;KEGG=Os08t0375500-00
Chr08	irgsp1_rep	five_prime_UTR	17617874	17617891	.	+	.	Parent=Os08t0375500-00
Chr08	irgsp1_rep	CDS	17617892	17618401	.	+	0	Parent=Os08t0375500-00
Chr08	irgsp1_rep	three_prime_UTR	17618402	17618498	.	+	.	Parent=Os08t0375500-00
Chr08	irgsp1_rep	mRNA	17625214	17625942	.	+	.	ID=Os08t0375700-00;Name=Os08t0375700-00;Locus_id=Os08g0375700;Oryzabase Gene Symbol Synonym(s)=OSK15;Oryzabase Gene Name Synonym(s)=S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 15%2C Oryza sativa SKP1-like gene 15;Note=BTB/POZ fold domain containing protein.;Transcript_evidence=AY336992 (DDBJ%2C Best hit);ORF_evidence=Q6J4U1 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);InterPro=SKP1 component (IPR001232),BTB/POZ fold (IPR011333),SKP1 component%2C dimerisation (IPR016072),SKP1 component%2C POZ (IPR016073),E3 ubiquitin ligase%2C SCF complex%2C Skp subunit (IPR016897);Oryzabase=18287;Expression=AY336992;TENOR=Os08t0375700-00;KEGG=Os08t0375700-00
Chr08	irgsp1_rep	five_prime_UTR	17625214	17625273	.	+	.	Parent=Os08t0375700-00
Chr08	irgsp1_rep	CDS	17625274	17625783	.	+	0	Parent=Os08t0375700-00
Chr08	irgsp1_rep	three_prime_UTR	17625784	17625942	.	+	.	Parent=Os08t0375700-00
Chr08	irgsp1_rep	mRNA	17628705	17631108	.	+	.	ID=Os08t0375800-01;Name=Os08t0375800-01;Locus_id=Os08g0375800;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK101199 (DDBJ%2C Best hit);ORF_evidence=A2YUP0 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033030L22;Expression=AK101199;TENOR=Os08t0375800-01;KEGG=Os08t0375800-01
Chr08	irgsp1_rep	five_prime_UTR	17628705	17628918	.	+	.	Parent=Os08t0375800-01
Chr08	irgsp1_rep	CDS	17628919	17631009	.	+	0	Parent=Os08t0375800-01
Chr08	irgsp1_rep	three_prime_UTR	17631010	17631108	.	+	.	Parent=Os08t0375800-01
Chr08	irgsp1_rep	mRNA	17634789	17639334	.	+	.	ID=Os08t0375900-01;Name=Os08t0375900-01;Locus_id=Os08g0375900;Note=Similar to Peroxisomal coenzyme A diphosphatase NUDT7.;Transcript_evidence=AK120761 (DDBJ%2C Best hit);ORF_evidence=B6T675 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=NUDIX hydrolase domain (IPR000086);NIAS_FLcDNA=J023007F20;Expression=AK120761;TENOR=Os08t0375900-01;KEGG=Os08t0375900-01
Chr08	irgsp1_rep	five_prime_UTR	17634789	17634815	.	+	.	Parent=Os08t0375900-01
Chr08	irgsp1_rep	CDS	17634816	17635178	.	+	0	Parent=Os08t0375900-01
Chr08	irgsp1_rep	three_prime_UTR	17635179	17639334	.	+	.	Parent=Os08t0375900-01
Chr08	irgsp1_rep	mRNA	17634791	17638402	.	+	.	ID=Os08t0375900-02;Name=Os08t0375900-02;Locus_id=Os08g0375900;Note=Similar to Nudix hydrolase 22%2C chloroplast precursor (EC 3.6.1.-) (AtNUDT22).;Transcript_evidence=AK069663 (DDBJ%2C Best hit);ORF_evidence=B6T675 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=NUDIX hydrolase domain (IPR000086),NUDIX hydrolase domain-like (IPR015797);NIAS_FLcDNA=J023030G02;Expression=AK069663;TENOR=Os08t0375900-02;KEGG=Os08t0375900-02
Chr08	irgsp1_rep	five_prime_UTR	17634791	17634815	.	+	.	Parent=Os08t0375900-02
Chr08	irgsp1_rep	CDS	17634816	17635080	.	+	0	Parent=Os08t0375900-02
Chr08	irgsp1_rep	CDS	17636206	17636348	.	+	2	Parent=Os08t0375900-02
Chr08	irgsp1_rep	CDS	17637259	17637378	.	+	0	Parent=Os08t0375900-02
Chr08	irgsp1_rep	CDS	17637738	17637962	.	+	0	Parent=Os08t0375900-02
Chr08	irgsp1_rep	three_prime_UTR	17637963	17638402	.	+	.	Parent=Os08t0375900-02
Chr08	irgsp1_rep	mRNA	17639419	17640296	.	-	.	ID=Os08t0376100-01;Name=Os08t0376100-01;Locus_id=Os08g0376100;Note=Conserved hypothetical protein.;Transcript_evidence=AK108088 (DDBJ%2C Best hit);ORF_evidence=Q69P87 (UniProt);NIAS_FLcDNA=002-138-H12;TENOR=Os08t0376100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	17639935	17640296	.	-	.	Parent=Os08t0376100-01
Chr08	irgsp1_rep	CDS	17639491	17639934	.	-	0	Parent=Os08t0376100-01
Chr08	irgsp1_rep	three_prime_UTR	17639419	17639490	.	-	.	Parent=Os08t0376100-01
Chr08	irgsp1_rep	mRNA	17643568	17646632	.	+	.	ID=Os08t0376200-01;Name=Os08t0376200-01;Locus_id=Os08g0376200;Note=Similar to Peroxisomal coenzyme A diphosphatase NUDT7.;Transcript_evidence=AK101135 (DDBJ%2C Best hit);ORF_evidence=B6T675 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=NUDIX hydrolase domain (IPR000086);NIAS_FLcDNA=J033026G16;TENOR=Os08t0376200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	17643568	17643599	.	+	.	Parent=Os08t0376200-01
Chr08	irgsp1_rep	CDS	17643600	17643956	.	+	0	Parent=Os08t0376200-01
Chr08	irgsp1_rep	three_prime_UTR	17643957	17645519	.	+	.	Parent=Os08t0376200-01
Chr08	irgsp1_rep	three_prime_UTR	17645672	17645791	.	+	.	Parent=Os08t0376200-01
Chr08	irgsp1_rep	three_prime_UTR	17646157	17646632	.	+	.	Parent=Os08t0376200-01
Chr08	irgsp1_rep	mRNA	17650558	17653886	.	-	.	ID=Os08t0376300-01;Name=Os08t0376300-01;Locus_id=Os08g0376300;Note=Similar to Leucine-rich receptor-like protein kinase.;Transcript_evidence=AK072348 (DDBJ%2C Best hit);ORF_evidence=A2YUP4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023050N03;Expression=AK072348;TENOR=Os08t0376300-01;KEGG=Os08t0376300-01
Chr08	irgsp1_rep	five_prime_UTR	17653846	17653886	.	-	.	Parent=Os08t0376300-01
Chr08	irgsp1_rep	CDS	17651265	17653845	.	-	0	Parent=Os08t0376300-01
Chr08	irgsp1_rep	CDS	17650844	17651196	.	-	2	Parent=Os08t0376300-01
Chr08	irgsp1_rep	three_prime_UTR	17650558	17650843	.	-	.	Parent=Os08t0376300-01
Chr08	irgsp1_rep	mRNA	17650897	17651200	.	+	.	ID=Os08t0376400-00;Name=Os08t0376400-00;Locus_id=Os08g0376400;Note=Hypothetical protein.;Transcript_evidence=EU951577 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0376400-00
Chr08	irgsp1_rep	five_prime_UTR	17650897	17650897	.	+	.	Parent=Os08t0376400-00
Chr08	irgsp1_rep	CDS	17650898	17651200	.	+	0	Parent=Os08t0376400-00
Chr08	irgsp1_rep	mRNA	17663617	17664970	.	+	.	ID=Os08t0376500-00;Name=Os08t0376500-00;Locus_id=Os08g0376500;Oryzabase Gene Symbol Synonym(s)=OspPLAIIgamma%2C pPLAIIgamma;Oryzabase Gene Name Synonym(s)=Patatin-related phospholipase A II gamma;Note=Similar to Patatin-like protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q29VI1 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: metabolic process (GO:0008152);InterPro=Patatin/Phospholipase A2-related (IPR002641),Acyl transferase/acyl hydrolase/lysophospholipase (IPR016035);Oryzabase=19862;TENOR=Os08t0376500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	17663617	17664047	.	+	0	Parent=Os08t0376500-00
Chr08	irgsp1_rep	CDS	17664487	17664664	.	+	1	Parent=Os08t0376500-00
Chr08	irgsp1_rep	CDS	17664797	17664970	.	+	0	Parent=Os08t0376500-00
Chr08	irgsp1_rep	mRNA	17665976	17666521	.	+	.	ID=Os08t0376550-00;Name=Os08t0376550-00;Locus_id=Os08g0376550;Note=Similar to Patatin-like protein 1.;Transcript_evidence=ab initio prediction;ORF_evidence=Q9FZ09 (UniProt);GO=Biological Process: metabolic process (GO:0008152);InterPro=Acyl transferase/acyl hydrolase/lysophospholipase (IPR016035);TENOR=Os08t0376550-00
Chr08	irgsp1_rep	CDS	17665976	17666521	.	+	0	Parent=Os08t0376550-00
Chr08	irgsp1_rep	mRNA	17672834	17674381	.	+	.	ID=Os08t0376600-01;Name=Os08t0376600-01;Locus_id=Os08g0376600;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK243683 (DDBJ%2C Best hit);ORF_evidence=NP_001061679.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J100090L21;TENOR=Os08t0376600-01;KEGG=Os08t0376600-01
Chr08	irgsp1_rep	five_prime_UTR	17672834	17672954	.	+	.	Parent=Os08t0376600-01
Chr08	irgsp1_rep	CDS	17672955	17674118	.	+	0	Parent=Os08t0376600-01
Chr08	irgsp1_rep	three_prime_UTR	17674119	17674381	.	+	.	Parent=Os08t0376600-01
Chr08	irgsp1_rep	mRNA	17677910	17678691	.	+	.	ID=Os08t0376700-01;Name=Os08t0376700-01;Locus_id=Os08g0376700;RAP-DB Gene Symbol Synonym(s)=RR8%2C rr8%2C OsRR8%2C Rra13%2C OsRR15%2C OsRRA13;RAP-DB Gene Name Synonym(s)=A-TYPE RESPONSE REGULATOR 8%2C A-TYPE response regulator 8%2C Type A response regulator 8%2C A-type RR 13;CGSNL Gene Symbol=RR8;CGSNL Gene Name=A-TYPE RESPONSE REGULATOR 8;Oryzabase Gene Symbol Synonym(s)=rr8%2C OsRR8%2C Rra13%2C OsRR15%2C RR15%2C OsRRA13;Oryzabase Gene Name Synonym(s)=A-TYPE response regulator 8%2C Type A response regulator 8%2C A-type RR 13;Note=A-type response regulator%2C Cytokinin signaling;Transcript_evidence=AB249663 (Genbank),BR000317 (Genbank);ORF_evidence=Q8GVV6 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: two-component response regulator activity (GO:0000156);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),CheY-like superfamily (IPR011006);Manual Curation=April 23%2C 2010;Literature_PMID=16919402,16472405,17293362;Oryzabase=8165;TENOR=Os08t0376700-01
Chr08	irgsp1_rep	CDS	17677910	17677997	.	+	0	Parent=Os08t0376700-01
Chr08	irgsp1_rep	CDS	17678121	17678167	.	+	2	Parent=Os08t0376700-01
Chr08	irgsp1_rep	CDS	17678254	17678331	.	+	0	Parent=Os08t0376700-01
Chr08	irgsp1_rep	CDS	17678430	17678500	.	+	0	Parent=Os08t0376700-01
Chr08	irgsp1_rep	CDS	17678610	17678691	.	+	1	Parent=Os08t0376700-01
Chr08	irgsp1_rep	mRNA	17685537	17686015	.	+	.	ID=Os08t0376900-00;Name=Os08t0376900-00;Locus_id=Os08g0376900;Note=ELF protein domain containing protein.;Transcript_evidence=L10365 (DDBJ);ORF_evidence=YP_002000591.1 (RefSeq);InterPro=ELF protein (IPR004990);TENOR=Os08t0376900-00
Chr08	irgsp1_rep	five_prime_UTR	17685537	17685817	.	+	.	Parent=Os08t0376900-00
Chr08	irgsp1_rep	CDS	17685818	17686015	.	+	0	Parent=Os08t0376900-00
Chr08	irgsp1_rep	mRNA	17699204	17703636	.	+	.	ID=Os08t0377100-00;Name=Os08t0377100-00;Locus_id=Os08g0377100;Oryzabase Gene Symbol Synonym(s)=OsFBX289%2C OsKIX_7%2C OsFbox442%2C Os_F0407%2C OsEnS-121;Oryzabase Gene Name Synonym(s)=KIX domain protein 7%2C F-box protein 289%2C F-box protein 442%2C endosperm-specific gene 121;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G0M8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=13461;TENOR=Os08t0377100-00;KEGG=Os08t0377100-00
Chr08	irgsp1_rep	CDS	17699204	17699289	.	+	0	Parent=Os08t0377100-00
Chr08	irgsp1_rep	CDS	17700578	17700689	.	+	1	Parent=Os08t0377100-00
Chr08	irgsp1_rep	CDS	17701369	17701555	.	+	0	Parent=Os08t0377100-00
Chr08	irgsp1_rep	CDS	17702089	17702588	.	+	2	Parent=Os08t0377100-00
Chr08	irgsp1_rep	CDS	17703547	17703636	.	+	0	Parent=Os08t0377100-00
Chr08	irgsp1_rep	mRNA	17709592	17714623	.	-	.	ID=Os08t0377150-01;Name=Os08t0377150-01;Locus_id=Os08g0377150;Note=Conserved hypothetical protein.;Transcript_evidence=AK288358 (DDBJ%2C Best hit);ORF_evidence=Q53RP4 (UniProt);NIAS_FLcDNA=J090024L19;TENOR=Os08t0377150-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	17713288	17714623	.	-	.	Parent=Os08t0377150-01
Chr08	irgsp1_rep	CDS	17713177	17713287	.	-	0	Parent=Os08t0377150-01
Chr08	irgsp1_rep	three_prime_UTR	17709592	17713176	.	-	.	Parent=Os08t0377150-01
Chr08	irgsp1_rep	mRNA	17714143	17714938	.	+	.	ID=Os08t0377200-01;Name=Os08t0377200-01;Locus_id=Os08g0377200;RAP-DB Gene Symbol Synonym(s)=RR12%2C OsRR12%2C Rra11%2C OsRR8%2C OsRRA11;RAP-DB Gene Name Synonym(s)=A-TYPE RESPONSE REGULATOR 12%2C A-TYPE response regulator 12%2C A-type RR 11;CGSNL Gene Symbol=RR12;CGSNL Gene Name=A-TYPE RESPONSE REGULATOR 12;Oryzabase Gene Symbol Synonym(s)=OsRR12%2C Rra11%2C OsRR8%2C RR8%2C OsRRA11;Oryzabase Gene Name Synonym(s)=A-TYPE response regulator 12%2C A-type RR 11;Note=A-type response regulator%2C Cytokinin signaling;Transcript_evidence=AB249664 (Genbank),BR000319 (Genbank);ORF_evidence=Q2HWG1 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: two-component response regulator activity (GO:0000156);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),CheY-like superfamily (IPR011006);Manual Curation=May 11%2C 2010;Literature_PMID=16919402,17293362;Oryzabase=8157;TENOR=Os08t0377200-01
Chr08	irgsp1_rep	CDS	17714143	17714230	.	+	0	Parent=Os08t0377200-01
Chr08	irgsp1_rep	CDS	17714353	17714399	.	+	2	Parent=Os08t0377200-01
Chr08	irgsp1_rep	CDS	17714485	17714562	.	+	0	Parent=Os08t0377200-01
Chr08	irgsp1_rep	CDS	17714677	17714747	.	+	0	Parent=Os08t0377200-01
Chr08	irgsp1_rep	CDS	17714857	17714938	.	+	1	Parent=Os08t0377200-01
Chr08	irgsp1_rep	mRNA	17730093	17734809	.	-	.	ID=Os08t0377400-01;Name=Os08t0377400-01;Locus_id=Os08g0377400;Note=Exonuclease domain containing protein.;Transcript_evidence=AK120163 (DDBJ%2C Best hit);ORF_evidence=NP_566499.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: exonuclease activity (GO:0004527);InterPro=Exonuclease (IPR006055),Ribonuclease H-like (IPR012337),Exonuclease%2C RNase T/DNA polymerase III (IPR013520);NIAS_FLcDNA=J013031E02;Expression=AK120163;TENOR=Os08t0377400-01;KEGG=Os08t0377400-01
Chr08	irgsp1_rep	five_prime_UTR	17734754	17734809	.	-	.	Parent=Os08t0377400-01
Chr08	irgsp1_rep	CDS	17734488	17734753	.	-	0	Parent=Os08t0377400-01
Chr08	irgsp1_rep	CDS	17734268	17734352	.	-	1	Parent=Os08t0377400-01
Chr08	irgsp1_rep	CDS	17732991	17733099	.	-	0	Parent=Os08t0377400-01
Chr08	irgsp1_rep	CDS	17732810	17732898	.	-	2	Parent=Os08t0377400-01
Chr08	irgsp1_rep	CDS	17732675	17732739	.	-	0	Parent=Os08t0377400-01
Chr08	irgsp1_rep	CDS	17732505	17732583	.	-	1	Parent=Os08t0377400-01
Chr08	irgsp1_rep	CDS	17732119	17732286	.	-	0	Parent=Os08t0377400-01
Chr08	irgsp1_rep	three_prime_UTR	17731295	17732118	.	-	.	Parent=Os08t0377400-01
Chr08	irgsp1_rep	three_prime_UTR	17730586	17731213	.	-	.	Parent=Os08t0377400-01
Chr08	irgsp1_rep	three_prime_UTR	17730093	17730378	.	-	.	Parent=Os08t0377400-01
Chr08	irgsp1_rep	mRNA	17731790	17734808	.	-	.	ID=Os08t0377400-02;Name=Os08t0377400-02;Locus_id=Os08g0377400;Note=Exonuclease domain containing protein.;Transcript_evidence=AK105467 (DDBJ%2C Best hit);ORF_evidence=NP_566499.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: exonuclease activity (GO:0004527);InterPro=Exonuclease (IPR006055),Ribonuclease H-like (IPR012337),Exonuclease%2C RNase T/DNA polymerase III (IPR013520);NIAS_FLcDNA=001-126-A05;Expression=AK105467;TENOR=Os08t0377400-02;KEGG=Os08t0377400-02
Chr08	irgsp1_rep	five_prime_UTR	17734754	17734808	.	-	.	Parent=Os08t0377400-02
Chr08	irgsp1_rep	CDS	17734488	17734753	.	-	0	Parent=Os08t0377400-02
Chr08	irgsp1_rep	CDS	17734268	17734352	.	-	1	Parent=Os08t0377400-02
Chr08	irgsp1_rep	CDS	17732991	17733099	.	-	0	Parent=Os08t0377400-02
Chr08	irgsp1_rep	CDS	17732810	17732898	.	-	2	Parent=Os08t0377400-02
Chr08	irgsp1_rep	CDS	17732675	17732739	.	-	0	Parent=Os08t0377400-02
Chr08	irgsp1_rep	CDS	17732505	17732583	.	-	1	Parent=Os08t0377400-02
Chr08	irgsp1_rep	CDS	17732119	17732286	.	-	0	Parent=Os08t0377400-02
Chr08	irgsp1_rep	three_prime_UTR	17731790	17732118	.	-	.	Parent=Os08t0377400-02
Chr08	irgsp1_rep	mRNA	17730432	17731885	.	+	.	ID=Os08t0377500-01;Name=Os08t0377500-01;Locus_id=Os08g0377500;Note=Protein of unknown function DUF599 family protein.;Transcript_evidence=AK061225 (DDBJ%2C Best hit),AK099366 (DDBJ%2C Best hit);ORF_evidence=F2DWN9 (UniProt);InterPro=Protein of unknown function DUF599 (IPR006747);NIAS_FLcDNA=006-210-H02,J033051C18;TENOR=Os08t0377500-01
Chr08	irgsp1_rep	five_prime_UTR	17730432	17730604	.	+	.	Parent=Os08t0377500-01
Chr08	irgsp1_rep	CDS	17730605	17730781	.	+	0	Parent=Os08t0377500-01
Chr08	irgsp1_rep	CDS	17730910	17731154	.	+	0	Parent=Os08t0377500-01
Chr08	irgsp1_rep	CDS	17731434	17731800	.	+	1	Parent=Os08t0377500-01
Chr08	irgsp1_rep	three_prime_UTR	17731801	17731885	.	+	.	Parent=Os08t0377500-01
Chr08	irgsp1_rep	mRNA	17766039	17768646	.	+	.	ID=Os08t0378000-02;Name=Os08t0378000-02;Locus_id=Os08g0378000;Note=Conserved hypothetical protein.;Transcript_evidence=AK067174 (DDBJ%2C Best hit),AK067437 (DDBJ%2C Best hit);ORF_evidence=B9G0N0 (UniProt);NIAS_FLcDNA=J013097E16,J013101D18;Expression=AK067174;TENOR=Os08t0378000-02;KEGG=Os08t0378000-02
Chr08	irgsp1_rep	five_prime_UTR	17766039	17766067	.	+	.	Parent=Os08t0378000-02
Chr08	irgsp1_rep	CDS	17766068	17767180	.	+	0	Parent=Os08t0378000-02
Chr08	irgsp1_rep	three_prime_UTR	17767181	17768646	.	+	.	Parent=Os08t0378000-02
Chr08	irgsp1_rep	mRNA	17767959	17770910	.	+	.	ID=Os08t0378000-03;Name=Os08t0378000-03;Locus_id=Os08g0378000;Note=Hypothetical protein.;Transcript_evidence=AK064901 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013000L16;TENOR=Os08t0378000-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	17767959	17767959	.	+	.	Parent=Os08t0378000-03
Chr08	irgsp1_rep	CDS	17767960	17768295	.	+	0	Parent=Os08t0378000-03
Chr08	irgsp1_rep	three_prime_UTR	17768296	17770910	.	+	.	Parent=Os08t0378000-03
Chr08	irgsp1_rep	mRNA	17767755	17768407	.	-	.	ID=Os08t0378100-01;Name=Os08t0378100-01;Locus_id=Os08g0378100;Note=Conserved hypothetical protein.;Transcript_evidence=AK107932 (DDBJ%2C Best hit);ORF_evidence=B9FPN1 (UniProt);NIAS_FLcDNA=002-135-A03;TENOR=Os08t0378100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	17768220	17768407	.	-	.	Parent=Os08t0378100-01
Chr08	irgsp1_rep	CDS	17767914	17768219	.	-	0	Parent=Os08t0378100-01
Chr08	irgsp1_rep	three_prime_UTR	17767755	17767913	.	-	.	Parent=Os08t0378100-01
Chr08	irgsp1_rep	mRNA	17781850	17782841	.	-	.	ID=Os08t0378250-00;Name=Os08t0378250-00;Locus_id=Os08g0378250;Note=Hypothetical protein.;Transcript_evidence=tplb0037c11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0378250-00
Chr08	irgsp1_rep	five_prime_UTR	17782174	17782841	.	-	.	Parent=Os08t0378250-00
Chr08	irgsp1_rep	CDS	17781850	17782173	.	-	0	Parent=Os08t0378250-00
Chr08	irgsp1_rep	mRNA	17782007	17783026	.	+	.	ID=Os08t0378300-00;Name=Os08t0378300-00;Locus_id=Os08g0378300;CGSNL Gene Symbol=RLCK254;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 254;Oryzabase Gene Symbol Synonym(s)=OsRLCK254;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 254;Note=Similar to cDNA clone:J013100G02%2C full insert sequence.;Transcript_evidence=ab initio prediction;ORF_evidence=B7EDE1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18944;TENOR=Os08t0378300-00;KEGG=Os08t0378300-00
Chr08	irgsp1_rep	CDS	17782007	17783026	.	+	0	Parent=Os08t0378300-00
Chr08	irgsp1_rep	mRNA	17815412	17817621	.	-	.	ID=Os08t0378800-01;Name=Os08t0378800-01;Locus_id=Os08g0378800;Note=Sterile alpha motif homology 2 domain containing protein.;Transcript_evidence=AK073371 (DDBJ%2C Best hit);ORF_evidence=A3BSM5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Sterile alpha motif domain (IPR001660),Sterile alpha motif%2C type 2 (IPR011510),Sterile alpha motif/pointed domain (IPR013761);NIAS_FLcDNA=J033025N24;Expression=AK073371;TENOR=Os08t0378800-01;KEGG=Os08t0378800-01
Chr08	irgsp1_rep	five_prime_UTR	17817319	17817621	.	-	.	Parent=Os08t0378800-01
Chr08	irgsp1_rep	five_prime_UTR	17816381	17816459	.	-	.	Parent=Os08t0378800-01
Chr08	irgsp1_rep	CDS	17815673	17816380	.	-	0	Parent=Os08t0378800-01
Chr08	irgsp1_rep	three_prime_UTR	17815412	17815672	.	-	.	Parent=Os08t0378800-01
Chr08	irgsp1_rep	mRNA	17814500	17817588	.	-	.	ID=Os08t0378800-02;Name=Os08t0378800-02;Locus_id=Os08g0378800;Note=Sterile alpha motif homology 2 domain containing protein.;Transcript_evidence=AK069952 (DDBJ%2C Best hit);ORF_evidence=A3BSM5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Sterile alpha motif domain (IPR001660),Sterile alpha motif%2C type 2 (IPR011510),Sterile alpha motif/pointed domain (IPR013761);NIAS_FLcDNA=J023036M04;Expression=AK069952;TENOR=Os08t0378800-02;KEGG=Os08t0378800-02
Chr08	irgsp1_rep	five_prime_UTR	17817319	17817588	.	-	.	Parent=Os08t0378800-02
Chr08	irgsp1_rep	five_prime_UTR	17816381	17816459	.	-	.	Parent=Os08t0378800-02
Chr08	irgsp1_rep	CDS	17815673	17816380	.	-	0	Parent=Os08t0378800-02
Chr08	irgsp1_rep	three_prime_UTR	17814500	17815672	.	-	.	Parent=Os08t0378800-02
Chr08	irgsp1_rep	mRNA	17818614	17820510	.	-	.	ID=Os08t0378900-01;Name=Os08t0378900-01;Locus_id=Os08g0378900;CGSNL Gene Symbol=TRXZ;CGSNL Gene Name=THIOREDOXIN Z-TYPE;Oryzabase Gene Symbol Synonym(s)=OsPAP10%2C PAP10%2C OsPAP10/OsTRXz%2C OsTRXz%2C TRXz;Oryzabase Gene Name Synonym(s)=PEP-associated protein 10%2C plastid-encoded plastid polymerase-associated protein 10%2C plastidic thioredoxin Z%2C THIOREDOXINZ%2C thioredoxin Z;Note=Similar to Thioredoxin protein.;Transcript_evidence=AK058590 (DDBJ%2C Best hit);ORF_evidence=B6T2E4 (UniProt);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Thioredoxin (IPR005746),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766),Thioredoxin%2C conserved site (IPR017937);NIAS_FLcDNA=001-017-G07;Oryzabase=21358;Expression=AK058590;TENOR=Os08t0378900-01;KEGG=Os08t0378900-01
Chr08	irgsp1_rep	five_prime_UTR	17820435	17820510	.	-	.	Parent=Os08t0378900-01
Chr08	irgsp1_rep	CDS	17820186	17820434	.	-	0	Parent=Os08t0378900-01
Chr08	irgsp1_rep	CDS	17819934	17820056	.	-	0	Parent=Os08t0378900-01
Chr08	irgsp1_rep	CDS	17818885	17818965	.	-	0	Parent=Os08t0378900-01
Chr08	irgsp1_rep	CDS	17818654	17818770	.	-	0	Parent=Os08t0378900-01
Chr08	irgsp1_rep	three_prime_UTR	17818614	17818653	.	-	.	Parent=Os08t0378900-01
Chr08	irgsp1_rep	mRNA	17818457	17820484	.	-	.	ID=Os08t0378900-02;Name=Os08t0378900-02;Locus_id=Os08g0378900;RAP-DB Gene Symbol Synonym(s)=OsTRXz;RAP-DB Gene Name Synonym(s)=thioredoxin Z;CGSNL Gene Symbol=TRXZ;CGSNL Gene Name=THIOREDOXIN Z-TYPE;Oryzabase Gene Symbol Synonym(s)=OsPAP10%2C PAP10%2C OsPAP10/OsTRXz%2C OsTRXz%2C TRXz;Oryzabase Gene Name Synonym(s)=PEP-associated protein 10%2C plastid-encoded plastid polymerase-associated protein 10%2C plastidic thioredoxin Z%2C THIOREDOXINZ%2C thioredoxin Z;Note=Subunit of PEP (Plastid-encoded RNA polymerase) in chloroplasts%2C Chloroplast development;Transcript_evidence=AK066851;ORF_evidence=Q8H2V6;GO=Biological Process: cell redox homeostasis (GO:0045454);InterPro=Thioredoxin-like superfamily (IPR036249),Thioredoxin domain (IPR013766),Thioredoxin%2C conserved site (IPR017937);NIAS_FLcDNA=J013082H01;Manual Curation=October 10%2C 2018;Literature_PMID=29319227,29045742,28248438;Oryzabase=21358;Expression=AK066851;TENOR=Os08t0378900-02;Subcellular location=chloroplast (GO:0009507)
Chr08	irgsp1_rep	five_prime_UTR	17820435	17820484	.	-	.	Parent=Os08t0378900-02
Chr08	irgsp1_rep	CDS	17820186	17820434	.	-	0	Parent=Os08t0378900-02
Chr08	irgsp1_rep	CDS	17819934	17820056	.	-	0	Parent=Os08t0378900-02
Chr08	irgsp1_rep	CDS	17818885	17818965	.	-	0	Parent=Os08t0378900-02
Chr08	irgsp1_rep	CDS	17818654	17818770	.	-	0	Parent=Os08t0378900-02
Chr08	irgsp1_rep	three_prime_UTR	17818457	17818653	.	-	.	Parent=Os08t0378900-02
Chr08	irgsp1_rep	mRNA	17822367	17838135	.	-	.	ID=Os08t0379000-01;Name=Os08t0379000-01;Locus_id=Os08g0379000;Note=RNA-processing protein%2C HAT helix domain containing protein.;Transcript_evidence=AK105647 (DDBJ%2C Best hit);ORF_evidence=Q1EPK1 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Cellular Component: intracellular (GO:0005622),Molecular Function: binding (GO:0005488);InterPro=RNA-processing protein%2C HAT helix (IPR003107),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-200-F08;Expression=AK105647;TENOR=Os08t0379000-01;KEGG=Os08t0379000-01
Chr08	irgsp1_rep	five_prime_UTR	17837991	17838135	.	-	.	Parent=Os08t0379000-01
Chr08	irgsp1_rep	CDS	17837927	17837990	.	-	0	Parent=Os08t0379000-01
Chr08	irgsp1_rep	CDS	17837157	17837254	.	-	2	Parent=Os08t0379000-01
Chr08	irgsp1_rep	CDS	17836763	17836914	.	-	0	Parent=Os08t0379000-01
Chr08	irgsp1_rep	CDS	17835815	17835982	.	-	1	Parent=Os08t0379000-01
Chr08	irgsp1_rep	CDS	17834403	17834757	.	-	1	Parent=Os08t0379000-01
Chr08	irgsp1_rep	CDS	17834169	17834312	.	-	0	Parent=Os08t0379000-01
Chr08	irgsp1_rep	CDS	17831386	17831538	.	-	0	Parent=Os08t0379000-01
Chr08	irgsp1_rep	CDS	17831189	17831302	.	-	0	Parent=Os08t0379000-01
Chr08	irgsp1_rep	CDS	17830732	17830809	.	-	0	Parent=Os08t0379000-01
Chr08	irgsp1_rep	CDS	17830465	17830614	.	-	0	Parent=Os08t0379000-01
Chr08	irgsp1_rep	CDS	17827883	17829757	.	-	0	Parent=Os08t0379000-01
Chr08	irgsp1_rep	CDS	17823866	17823916	.	-	0	Parent=Os08t0379000-01
Chr08	irgsp1_rep	CDS	17823653	17823736	.	-	0	Parent=Os08t0379000-01
Chr08	irgsp1_rep	three_prime_UTR	17822367	17823652	.	-	.	Parent=Os08t0379000-01
Chr08	irgsp1_rep	mRNA	17849523	17850843	.	+	.	ID=Os08t0379200-01;Name=Os08t0379200-01;Locus_id=Os08g0379200;Note=ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter family protein.;Transcript_evidence=AK108698 (DDBJ%2C Best hit);ORF_evidence=D2DWC5 (UniProt);NIAS_FLcDNA=002-149-G12;Expression=AK108698;TENOR=Os08t0379200-01;KEGG=Os08t0379200-01 (EC:3.6.3.1)
Chr08	irgsp1_rep	five_prime_UTR	17849523	17849523	.	+	.	Parent=Os08t0379200-01
Chr08	irgsp1_rep	CDS	17849524	17849697	.	+	0	Parent=Os08t0379200-01
Chr08	irgsp1_rep	CDS	17849796	17850314	.	+	0	Parent=Os08t0379200-01
Chr08	irgsp1_rep	three_prime_UTR	17850315	17850843	.	+	.	Parent=Os08t0379200-01
Chr08	irgsp1_rep	mRNA	17851904	17855906	.	+	.	ID=Os08t0379300-01;Name=Os08t0379300-01;Locus_id=Os08g0379300;Oryzabase Gene Symbol Synonym(s)=OsPP100;Oryzabase Gene Name Synonym(s)=Protein phosphatase 100;Note=Protein-tyrosine phosphatase%2C dual specificity domain containing protein.;Transcript_evidence=AK072357 (DDBJ%2C Best hit);ORF_evidence=NP_566139.1 (RefSeq);GO=Biological Process: protein dephosphorylation (GO:0006470),Molecular Function: protein tyrosine/serine/threonine phosphatase activity (GO:0008138);InterPro=Dual specificity phosphatase%2C catalytic domain (IPR000340),Dual specificity phosphatase%2C subgroup%2C catalytic domain (IPR020422);NIAS_FLcDNA=J023061I01;Oryzabase=18649;Expression=AK072357;TENOR=Os08t0379300-01;KEGG=Os08t0379300-01
Chr08	irgsp1_rep	five_prime_UTR	17851904	17852015	.	+	.	Parent=Os08t0379300-01
Chr08	irgsp1_rep	CDS	17852016	17852333	.	+	0	Parent=Os08t0379300-01
Chr08	irgsp1_rep	CDS	17852769	17852875	.	+	0	Parent=Os08t0379300-01
Chr08	irgsp1_rep	CDS	17853280	17853733	.	+	1	Parent=Os08t0379300-01
Chr08	irgsp1_rep	CDS	17853864	17853935	.	+	0	Parent=Os08t0379300-01
Chr08	irgsp1_rep	CDS	17854045	17854166	.	+	0	Parent=Os08t0379300-01
Chr08	irgsp1_rep	CDS	17854320	17854535	.	+	1	Parent=Os08t0379300-01
Chr08	irgsp1_rep	CDS	17854633	17854741	.	+	1	Parent=Os08t0379300-01
Chr08	irgsp1_rep	CDS	17854859	17854971	.	+	0	Parent=Os08t0379300-01
Chr08	irgsp1_rep	CDS	17855157	17855304	.	+	1	Parent=Os08t0379300-01
Chr08	irgsp1_rep	CDS	17855515	17855637	.	+	0	Parent=Os08t0379300-01
Chr08	irgsp1_rep	three_prime_UTR	17855638	17855906	.	+	.	Parent=Os08t0379300-01
Chr08	irgsp1_rep	mRNA	17853911	17857725	.	+	.	ID=Os08t0379300-02;Name=Os08t0379300-02;Locus_id=Os08g0379300;Oryzabase Gene Symbol Synonym(s)=OsPP100;Oryzabase Gene Name Synonym(s)=Protein phosphatase 100;Note=Hypothetical conserved gene.;Transcript_evidence=AK119345 (DDBJ%2C Best hit);ORF_evidence=NP_566139.1 (RefSeq);GO=Biological Process: protein dephosphorylation (GO:0006470),Molecular Function: protein tyrosine/serine/threonine phosphatase activity (GO:0008138);InterPro=Dual specificity phosphatase%2C catalytic domain (IPR000340);NIAS_FLcDNA=001-131-E02;Oryzabase=18649;Expression=AK119345;TENOR=Os08t0379300-02;KEGG=Os08t0379300-02
Chr08	irgsp1_rep	five_prime_UTR	17853911	17853911	.	+	.	Parent=Os08t0379300-02
Chr08	irgsp1_rep	CDS	17853912	17853935	.	+	0	Parent=Os08t0379300-02
Chr08	irgsp1_rep	CDS	17854045	17854166	.	+	0	Parent=Os08t0379300-02
Chr08	irgsp1_rep	CDS	17854320	17854535	.	+	1	Parent=Os08t0379300-02
Chr08	irgsp1_rep	CDS	17854633	17854741	.	+	1	Parent=Os08t0379300-02
Chr08	irgsp1_rep	CDS	17854859	17854971	.	+	0	Parent=Os08t0379300-02
Chr08	irgsp1_rep	CDS	17855157	17855304	.	+	1	Parent=Os08t0379300-02
Chr08	irgsp1_rep	CDS	17855515	17855637	.	+	0	Parent=Os08t0379300-02
Chr08	irgsp1_rep	three_prime_UTR	17855638	17857725	.	+	.	Parent=Os08t0379300-02
Chr08	irgsp1_rep	mRNA	17854678	17855905	.	+	.	ID=Os08t0379300-03;Name=Os08t0379300-03;Locus_id=Os08g0379300;Oryzabase Gene Symbol Synonym(s)=OsPP100;Oryzabase Gene Name Synonym(s)=Protein phosphatase 100;Note=Similar to 5'-AMP-activated protein kinase beta-1 subunit-related.;Transcript_evidence=AK103923 (DDBJ%2C Best hit);ORF_evidence=NP_566139.1 (RefSeq);NIAS_FLcDNA=001-013-C11;Oryzabase=18649;Expression=AK103923;TENOR=Os08t0379300-03;KEGG=Os08t0379300-03
Chr08	irgsp1_rep	five_prime_UTR	17854678	17854678	.	+	.	Parent=Os08t0379300-03
Chr08	irgsp1_rep	CDS	17854679	17854741	.	+	0	Parent=Os08t0379300-03
Chr08	irgsp1_rep	CDS	17854859	17854971	.	+	0	Parent=Os08t0379300-03
Chr08	irgsp1_rep	CDS	17855157	17855304	.	+	1	Parent=Os08t0379300-03
Chr08	irgsp1_rep	CDS	17855515	17855637	.	+	0	Parent=Os08t0379300-03
Chr08	irgsp1_rep	three_prime_UTR	17855638	17855905	.	+	.	Parent=Os08t0379300-03
Chr08	irgsp1_rep	mRNA	17855815	17857615	.	-	.	ID=Os08t0379400-01;Name=Os08t0379400-01;Locus_id=Os08g0379400;Note=Similar to Quinone oxidoreductase-like protein.;Transcript_evidence=AK109433 (DDBJ%2C Best hit);ORF_evidence=NP_173786.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),Quinone oxidoreductase/zeta-crystallin%2C conserved site (IPR002364),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=006-308-C06;Expression=AK109433;TENOR=Os08t0379400-01;KEGG=Os08t0379400-01
Chr08	irgsp1_rep	five_prime_UTR	17857451	17857615	.	-	.	Parent=Os08t0379400-01
Chr08	irgsp1_rep	CDS	17857028	17857450	.	-	0	Parent=Os08t0379400-01
Chr08	irgsp1_rep	CDS	17856609	17856932	.	-	0	Parent=Os08t0379400-01
Chr08	irgsp1_rep	CDS	17856350	17856509	.	-	0	Parent=Os08t0379400-01
Chr08	irgsp1_rep	CDS	17855980	17856245	.	-	2	Parent=Os08t0379400-01
Chr08	irgsp1_rep	three_prime_UTR	17855815	17855979	.	-	.	Parent=Os08t0379400-01
Chr08	irgsp1_rep	mRNA	17855702	17857508	.	-	.	ID=Os08t0379400-02;Name=Os08t0379400-02;Locus_id=Os08g0379400;Note=Similar to Quinone oxidoreductase-like protein.;Transcript_evidence=AK069608 (DDBJ%2C Best hit);ORF_evidence=NP_173786.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),Quinone oxidoreductase/zeta-crystallin%2C conserved site (IPR002364),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023019N13;Expression=AK069608;TENOR=Os08t0379400-02;KEGG=Os08t0379400-02
Chr08	irgsp1_rep	five_prime_UTR	17857451	17857508	.	-	.	Parent=Os08t0379400-02
Chr08	irgsp1_rep	CDS	17857028	17857450	.	-	0	Parent=Os08t0379400-02
Chr08	irgsp1_rep	CDS	17856609	17856932	.	-	0	Parent=Os08t0379400-02
Chr08	irgsp1_rep	CDS	17856350	17856509	.	-	0	Parent=Os08t0379400-02
Chr08	irgsp1_rep	CDS	17855980	17856245	.	-	2	Parent=Os08t0379400-02
Chr08	irgsp1_rep	three_prime_UTR	17855702	17855979	.	-	.	Parent=Os08t0379400-02
Chr08	irgsp1_rep	mRNA	17855775	17857463	.	-	.	ID=Os08t0379400-03;Name=Os08t0379400-03;Locus_id=Os08g0379400;Note=Similar to Quinone oxidoreductase-like protein.;Transcript_evidence=AK104318 (DDBJ%2C Best hit);ORF_evidence=NP_173786.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),Quinone oxidoreductase/zeta-crystallin%2C conserved site (IPR002364),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-024-D02;Expression=AK104318;TENOR=Os08t0379400-03;KEGG=Os08t0379400-03
Chr08	irgsp1_rep	five_prime_UTR	17857451	17857463	.	-	.	Parent=Os08t0379400-03
Chr08	irgsp1_rep	CDS	17857028	17857450	.	-	0	Parent=Os08t0379400-03
Chr08	irgsp1_rep	CDS	17856609	17856932	.	-	0	Parent=Os08t0379400-03
Chr08	irgsp1_rep	CDS	17856350	17856509	.	-	0	Parent=Os08t0379400-03
Chr08	irgsp1_rep	CDS	17855980	17856245	.	-	2	Parent=Os08t0379400-03
Chr08	irgsp1_rep	three_prime_UTR	17855775	17855979	.	-	.	Parent=Os08t0379400-03
Chr08	irgsp1_rep	mRNA	17855680	17856862	.	-	.	ID=Os08t0379400-04;Name=Os08t0379400-04;Locus_id=Os08g0379400;Note=Similar to predicted protein.;Transcript_evidence=AK112013 (DDBJ%2C Best hit);ORF_evidence=NP_173786.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),Quinone oxidoreductase/zeta-crystallin%2C conserved site (IPR002364),Alcohol dehydrogenase%2C C-terminal (IPR013149),NAD(P)-binding domain (IPR016040),Polyketide synthase%2C enoylreductase (IPR020843);NIAS_FLcDNA=006-212-C09;Expression=AK112013;TENOR=Os08t0379400-04;KEGG=Os08t0379400-04
Chr08	irgsp1_rep	five_prime_UTR	17856861	17856862	.	-	.	Parent=Os08t0379400-04
Chr08	irgsp1_rep	CDS	17856609	17856860	.	-	0	Parent=Os08t0379400-04
Chr08	irgsp1_rep	CDS	17856350	17856509	.	-	0	Parent=Os08t0379400-04
Chr08	irgsp1_rep	CDS	17855980	17856245	.	-	2	Parent=Os08t0379400-04
Chr08	irgsp1_rep	three_prime_UTR	17855680	17855979	.	-	.	Parent=Os08t0379400-04
Chr08	irgsp1_rep	mRNA	17904215	17906771	.	+	.	ID=Os08t0380100-01;Name=Os08t0380100-01;Locus_id=Os08g0380100;Oryzabase Gene Symbol Synonym(s)=OsBURP12;Oryzabase Gene Name Synonym(s)=BURP domain-containing protein 12;Note=Similar to Polygalacturonase isoenzyme 1 beta subunit (Fragment).;Transcript_evidence=AK101838 (DDBJ%2C Best hit);ORF_evidence=Q6ZA27 (UniProt);InterPro=BURP (IPR004873);NIAS_FLcDNA=J033069D10;Oryzabase=15051;Expression=AK101838;TENOR=Os08t0380100-01;KEGG=Os08t0380100-01
Chr08	irgsp1_rep	five_prime_UTR	17904215	17904278	.	+	.	Parent=Os08t0380100-01
Chr08	irgsp1_rep	CDS	17904279	17906162	.	+	0	Parent=Os08t0380100-01
Chr08	irgsp1_rep	three_prime_UTR	17906163	17906771	.	+	.	Parent=Os08t0380100-01
Chr08	irgsp1_rep	mRNA	17904247	17906373	.	+	.	ID=Os08t0380100-02;Name=Os08t0380100-02;Locus_id=Os08g0380100;Oryzabase Gene Symbol Synonym(s)=OsBURP12;Oryzabase Gene Name Synonym(s)=BURP domain-containing protein 12;Note=Similar to Polygalacturonase isoenzyme 1 beta subunit (Fragment).;Transcript_evidence=AK103679 (DDBJ%2C Best hit);ORF_evidence=Q6ZA27 (UniProt);InterPro=BURP (IPR004873);NIAS_FLcDNA=J033136D21;Oryzabase=15051;Expression=AK103679;TENOR=Os08t0380100-02;KEGG=Os08t0380100-02
Chr08	irgsp1_rep	five_prime_UTR	17904247	17904278	.	+	.	Parent=Os08t0380100-02
Chr08	irgsp1_rep	CDS	17904279	17906162	.	+	0	Parent=Os08t0380100-02
Chr08	irgsp1_rep	three_prime_UTR	17906163	17906373	.	+	.	Parent=Os08t0380100-02
Chr08	irgsp1_rep	mRNA	18020081	18023869	.	+	.	ID=Os08t0382400-01;Name=Os08t0382400-01;Locus_id=Os08g0382400;CGSNL Gene Symbol=CYP38;CGSNL Gene Name=CYCLOPHILIN 38;Oryzabase Gene Symbol Synonym(s)=OsCYP38%2C OsCYP38a%2C OsCYP38b;Oryzabase Gene Name Synonym(s)=cyclophilin 38;Note=Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type domain containing protein.;Transcript_evidence=AK099874 (DDBJ%2C Best hit);ORF_evidence=NP_001151852.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);InterPro=Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type (IPR002130),Cyclophilin-like (IPR015891),PsbQ-like domain (IPR023222);NIAS_FLcDNA=J013111G22;Oryzabase=10069;Expression=AK099874;TENOR=Os08t0382400-01;KEGG=Os08t0382400-01
Chr08	irgsp1_rep	five_prime_UTR	18020081	18020149	.	+	.	Parent=Os08t0382400-01
Chr08	irgsp1_rep	CDS	18020150	18020266	.	+	0	Parent=Os08t0382400-01
Chr08	irgsp1_rep	CDS	18021346	18021630	.	+	0	Parent=Os08t0382400-01
Chr08	irgsp1_rep	CDS	18021792	18021991	.	+	0	Parent=Os08t0382400-01
Chr08	irgsp1_rep	CDS	18022554	18022789	.	+	1	Parent=Os08t0382400-01
Chr08	irgsp1_rep	CDS	18023050	18023192	.	+	2	Parent=Os08t0382400-01
Chr08	irgsp1_rep	CDS	18023300	18023371	.	+	0	Parent=Os08t0382400-01
Chr08	irgsp1_rep	CDS	18023472	18023699	.	+	0	Parent=Os08t0382400-01
Chr08	irgsp1_rep	three_prime_UTR	18023700	18023869	.	+	.	Parent=Os08t0382400-01
Chr08	irgsp1_rep	mRNA	18023478	18023911	.	+	.	ID=Os08t0382400-02;Name=Os08t0382400-02;Locus_id=Os08g0382400;CGSNL Gene Symbol=CYP38;CGSNL Gene Name=CYCLOPHILIN 38;Oryzabase Gene Symbol Synonym(s)=OsCYP38%2C OsCYP38a%2C OsCYP38b;Oryzabase Gene Name Synonym(s)=cyclophilin 38;Note=Similar to Peptidyl-prolyl cis-trans isomerase (Fragment).;Transcript_evidence=AK058264 (DDBJ%2C Best hit);ORF_evidence=A6MZC4 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);InterPro=Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type (IPR002130),Cyclophilin-like (IPR015891);NIAS_FLcDNA=001-013-A03;Oryzabase=10069;Expression=AK058264;TENOR=Os08t0382400-02;KEGG=Os08t0382400-02
Chr08	irgsp1_rep	CDS	18023478	18023699	.	+	0	Parent=Os08t0382400-02
Chr08	irgsp1_rep	three_prime_UTR	18023700	18023911	.	+	.	Parent=Os08t0382400-02
Chr08	irgsp1_rep	mRNA	18023576	18023861	.	+	.	ID=Os08t0382400-03;Name=Os08t0382400-03;Locus_id=Os08g0382400;CGSNL Gene Symbol=CYP38;CGSNL Gene Name=CYCLOPHILIN 38;Oryzabase Gene Symbol Synonym(s)=OsCYP38%2C OsCYP38a%2C OsCYP38b;Oryzabase Gene Name Synonym(s)=cyclophilin 38;Note=Similar to Peptidyl-prolyl cis-trans isomerase (Fragment).;Transcript_evidence=AK060624 (DDBJ%2C Best hit);ORF_evidence=A6MZC4 (UniProt);NIAS_FLcDNA=001-026-G03;Oryzabase=10069;Expression=AK060624;TENOR=Os08t0382400-03;KEGG=Os08t0382400-03
Chr08	irgsp1_rep	five_prime_UTR	18023576	18023576	.	+	.	Parent=Os08t0382400-03
Chr08	irgsp1_rep	CDS	18023577	18023699	.	+	0	Parent=Os08t0382400-03
Chr08	irgsp1_rep	three_prime_UTR	18023700	18023861	.	+	.	Parent=Os08t0382400-03
Chr08	irgsp1_rep	mRNA	18021343	18021464	.	-	.	ID=Os08t0382500-00;Name=Os08t0382500-00;Locus_id=Os08g0382500;Note=Non-protein coding transcript.;Transcript_evidence=BT085160 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0382500-00
Chr08	irgsp1_rep	exon	18021343	18021464	.	-	.	Parent=Os08t0382500-00
Chr08	irgsp1_rep	mRNA	18025869	18026602	.	+	.	ID=Os08t0382600-00;Name=Os08t0382600-00;Locus_id=Os08g0382600;Note=Hypothetical conserved gene.;Transcript_evidence=BT086314 (DDBJ);ORF_evidence=NP_001055695.1 (RefSeq);TENOR=Os08t0382600-00;KEGG=Os08t0382600-00
Chr08	irgsp1_rep	five_prime_UTR	18025869	18026074	.	+	.	Parent=Os08t0382600-00
Chr08	irgsp1_rep	CDS	18026075	18026602	.	+	0	Parent=Os08t0382600-00
Chr08	irgsp1_rep	mRNA	18027778	18029413	.	+	.	ID=Os08t0382800-01;Name=Os08t0382800-01;Locus_id=Os08g0382800;Oryzabase Gene Symbol Synonym(s)=OsFbox443%2C Os_F0084%2C OsSTA212;Oryzabase Gene Name Synonym(s)=F-box protein 443;Note=Hypothetical conserved gene.;Transcript_evidence=AK066272 (DDBJ%2C Best hit);ORF_evidence=A2YUS6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013059F18;Oryzabase=17213;TENOR=Os08t0382800-01
Chr08	irgsp1_rep	five_prime_UTR	18027778	18028428	.	+	.	Parent=Os08t0382800-01
Chr08	irgsp1_rep	CDS	18028429	18029413	.	+	0	Parent=Os08t0382800-01
Chr08	irgsp1_rep	mRNA	18029592	18031385	.	+	.	ID=Os08t0383250-01;Name=Os08t0383250-01;Locus_id=Os08g0383250;Oryzabase Gene Symbol Synonym(s)=OsFbox443%2C Os_F0084%2C OsSTA212;Oryzabase Gene Name Synonym(s)=F-box protein 443;Note=Hypothetical conserved gene.;Transcript_evidence=AK288776 (DDBJ%2C Best hit);ORF_evidence=B9G0N9 (UniProt);NIAS_FLcDNA=J090068H23;Oryzabase=17213;TENOR=Os08t0383250-01;KEGG=Os08t0383250-01
Chr08	irgsp1_rep	five_prime_UTR	18029592	18029604	.	+	.	Parent=Os08t0383250-01
Chr08	irgsp1_rep	CDS	18029605	18029892	.	+	0	Parent=Os08t0383250-01
Chr08	irgsp1_rep	three_prime_UTR	18029893	18031385	.	+	.	Parent=Os08t0383250-01
Chr08	irgsp1_rep	mRNA	18089748	18091962	.	+	.	ID=Os08t0383700-01;Name=Os08t0383700-01;Locus_id=Os08g0383700;Note=Similar to Repressor protein.;Transcript_evidence=AK061580 (DDBJ%2C Best hit);ORF_evidence=Q8W0W9 (UniProt);GO=Molecular Function: DNA binding (GO:0003677);InterPro=Histone-fold (IPR009072);NIAS_FLcDNA=006-311-H08;Expression=AK061580;TENOR=Os08t0383700-01;KEGG=Os08t0383700-01
Chr08	irgsp1_rep	five_prime_UTR	18089748	18089748	.	+	.	Parent=Os08t0383700-01
Chr08	irgsp1_rep	CDS	18089749	18089814	.	+	0	Parent=Os08t0383700-01
Chr08	irgsp1_rep	CDS	18090899	18090967	.	+	0	Parent=Os08t0383700-01
Chr08	irgsp1_rep	CDS	18091053	18091634	.	+	0	Parent=Os08t0383700-01
Chr08	irgsp1_rep	three_prime_UTR	18091635	18091962	.	+	.	Parent=Os08t0383700-01
Chr08	irgsp1_rep	mRNA	18090632	18091933	.	+	.	ID=Os08t0383700-02;Name=Os08t0383700-02;Locus_id=Os08g0383700;Note=Similar to Repressor protein.;Transcript_evidence=AK073566 (DDBJ%2C Best hit);ORF_evidence=Q8W0W9 (UniProt);GO=Molecular Function: DNA binding (GO:0003677);InterPro=Histone-fold (IPR009072);NIAS_FLcDNA=J033043O05;Expression=AK073566;TENOR=Os08t0383700-02;KEGG=Os08t0383700-02
Chr08	irgsp1_rep	five_prime_UTR	18090632	18090802	.	+	.	Parent=Os08t0383700-02
Chr08	irgsp1_rep	CDS	18090803	18090967	.	+	0	Parent=Os08t0383700-02
Chr08	irgsp1_rep	CDS	18091053	18091634	.	+	0	Parent=Os08t0383700-02
Chr08	irgsp1_rep	three_prime_UTR	18091635	18091933	.	+	.	Parent=Os08t0383700-02
Chr08	irgsp1_rep	mRNA	18091075	18091632	.	-	.	ID=Os08t0383750-00;Name=Os08t0383750-00;Locus_id=Os08g0383750;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os08t0383750-00;KEGG=Os08t0383750-00
Chr08	irgsp1_rep	CDS	18091075	18091632	.	-	0	Parent=Os08t0383750-00
Chr08	irgsp1_rep	mRNA	18093397	18095760	.	-	.	ID=Os08t0383800-00;Name=Os08t0383800-00;Locus_id=Os08g0383800;Note=Taurine catabolism dioxygenase TauD/TfdA domain containing protein.;Transcript_evidence=BT055709 (DDBJ);ORF_evidence=Q6YW66 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Taurine catabolism dioxygenase TauD/TfdA (IPR003819);TENOR=Os08t0383800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	18095389	18095760	.	-	0	Parent=Os08t0383800-00
Chr08	irgsp1_rep	CDS	18095014	18095267	.	-	0	Parent=Os08t0383800-00
Chr08	irgsp1_rep	CDS	18093402	18093747	.	-	1	Parent=Os08t0383800-00
Chr08	irgsp1_rep	three_prime_UTR	18093397	18093401	.	-	.	Parent=Os08t0383800-00
Chr08	irgsp1_rep	mRNA	18098755	18102910	.	+	.	ID=Os08t0384000-01;Name=Os08t0384000-01;Locus_id=Os08g0384000;Note=CytoChrome b561 family protein.;Transcript_evidence=AK243540 (DDBJ%2C Best hit);ORF_evidence=B6T6Y9 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=CytoChrome b561%2C eukaryote (IPR004877),CytoChrome b561/ferric reductase transmembrane (IPR006593);NIAS_FLcDNA=J100078H15;TENOR=Os08t0384000-01;KEGG=Os08t0384000-01
Chr08	irgsp1_rep	five_prime_UTR	18098755	18098841	.	+	.	Parent=Os08t0384000-01
Chr08	irgsp1_rep	CDS	18098842	18098991	.	+	0	Parent=Os08t0384000-01
Chr08	irgsp1_rep	CDS	18100742	18100790	.	+	0	Parent=Os08t0384000-01
Chr08	irgsp1_rep	CDS	18101975	18102174	.	+	2	Parent=Os08t0384000-01
Chr08	irgsp1_rep	CDS	18102271	18102576	.	+	0	Parent=Os08t0384000-01
Chr08	irgsp1_rep	three_prime_UTR	18102577	18102910	.	+	.	Parent=Os08t0384000-01
Chr08	irgsp1_rep	mRNA	18103272	18108359	.	-	.	ID=Os08t0384100-01;Name=Os08t0384100-01;Locus_id=Os08g0384100;Note=Double-stranded RNA-binding-like domain containing protein.;Transcript_evidence=AK065829 (DDBJ%2C Best hit);ORF_evidence=Q6YW64 (UniProt);GO=Biological Process: rRNA catabolic process (GO:0016075),Cellular Component: intracellular (GO:0005622),Molecular Function: RNA binding (GO:0003723),Molecular Function: double-stranded RNA binding (GO:0003725),Molecular Function: ribonuclease III activity (GO:0004525);InterPro=Double-stranded RNA-binding (IPR001159),Ribonuclease III%2C bacterial (IPR011907),Double-stranded RNA-binding-like (IPR014720);NIAS_FLcDNA=J013037D04;Expression=AK065829;TENOR=Os08t0384100-01;KEGG=Os08t0384100-01
Chr08	irgsp1_rep	five_prime_UTR	18108259	18108359	.	-	.	Parent=Os08t0384100-01
Chr08	irgsp1_rep	CDS	18108156	18108258	.	-	0	Parent=Os08t0384100-01
Chr08	irgsp1_rep	CDS	18106392	18106660	.	-	2	Parent=Os08t0384100-01
Chr08	irgsp1_rep	CDS	18105336	18105546	.	-	0	Parent=Os08t0384100-01
Chr08	irgsp1_rep	CDS	18105044	18105208	.	-	2	Parent=Os08t0384100-01
Chr08	irgsp1_rep	CDS	18104750	18104940	.	-	2	Parent=Os08t0384100-01
Chr08	irgsp1_rep	three_prime_UTR	18104727	18104749	.	-	.	Parent=Os08t0384100-01
Chr08	irgsp1_rep	three_prime_UTR	18103272	18103676	.	-	.	Parent=Os08t0384100-01
Chr08	irgsp1_rep	mRNA	18128558	18132719	.	-	.	ID=Os08t0384500-01;Name=Os08t0384500-01;Locus_id=Os08g0384500;CGSNL Gene Symbol=PDR17;CGSNL Gene Name=PLEIOTROPIC DRUG RESISTANCE 17;Oryzabase Gene Symbol Synonym(s)=OsABCG44%2C OsPDR17;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 44%2C pleiotropic drug resistance 17;Note=ABC transporter-like domain containing protein.;Transcript_evidence=AK100858 (DDBJ%2C Best hit);ORF_evidence=Q6YW62 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC-2 type transporter (IPR013525),Plant PDR ABC transporter associated (IPR013581);NIAS_FLcDNA=J023123M02;Oryzabase=12017;TENOR=Os08t0384500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	18132683	18132719	.	-	0	Parent=Os08t0384500-01
Chr08	irgsp1_rep	CDS	18132489	18132592	.	-	2	Parent=Os08t0384500-01
Chr08	irgsp1_rep	CDS	18132252	18132408	.	-	0	Parent=Os08t0384500-01
Chr08	irgsp1_rep	CDS	18132067	18132171	.	-	2	Parent=Os08t0384500-01
Chr08	irgsp1_rep	CDS	18131861	18131991	.	-	2	Parent=Os08t0384500-01
Chr08	irgsp1_rep	CDS	18131223	18131555	.	-	0	Parent=Os08t0384500-01
Chr08	irgsp1_rep	CDS	18130852	18131142	.	-	0	Parent=Os08t0384500-01
Chr08	irgsp1_rep	CDS	18130666	18130749	.	-	0	Parent=Os08t0384500-01
Chr08	irgsp1_rep	CDS	18130400	18130533	.	-	0	Parent=Os08t0384500-01
Chr08	irgsp1_rep	CDS	18130065	18130292	.	-	1	Parent=Os08t0384500-01
Chr08	irgsp1_rep	CDS	18129801	18129972	.	-	1	Parent=Os08t0384500-01
Chr08	irgsp1_rep	CDS	18129457	18129711	.	-	0	Parent=Os08t0384500-01
Chr08	irgsp1_rep	CDS	18128802	18129062	.	-	0	Parent=Os08t0384500-01
Chr08	irgsp1_rep	three_prime_UTR	18128558	18128801	.	-	.	Parent=Os08t0384500-01
Chr08	irgsp1_rep	mRNA	18146416	18149369	.	-	.	ID=Os08t0384700-01;Name=Os08t0384700-01;Locus_id=Os08g0384700;Note=Hypothetical gene.;Transcript_evidence=AK063020 (DDBJ%2C Best hit);ORF_evidence=B9FBV5 (UniProt);NIAS_FLcDNA=001-110-B02;Expression=AK063020;TENOR=Os08t0384700-01;KEGG=Os08t0384700-01
Chr08	irgsp1_rep	CDS	18148944	18149369	.	-	0	Parent=Os08t0384700-01
Chr08	irgsp1_rep	three_prime_UTR	18148926	18148943	.	-	.	Parent=Os08t0384700-01
Chr08	irgsp1_rep	three_prime_UTR	18148463	18148556	.	-	.	Parent=Os08t0384700-01
Chr08	irgsp1_rep	three_prime_UTR	18148314	18148374	.	-	.	Parent=Os08t0384700-01
Chr08	irgsp1_rep	three_prime_UTR	18147596	18147642	.	-	.	Parent=Os08t0384700-01
Chr08	irgsp1_rep	three_prime_UTR	18147331	18147433	.	-	.	Parent=Os08t0384700-01
Chr08	irgsp1_rep	three_prime_UTR	18146773	18146816	.	-	.	Parent=Os08t0384700-01
Chr08	irgsp1_rep	three_prime_UTR	18146416	18146644	.	-	.	Parent=Os08t0384700-01
Chr08	irgsp1_rep	mRNA	18156707	18160976	.	+	.	ID=Os08t0384900-01;Name=Os08t0384900-01;Locus_id=Os08g0384900;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK072915 (DDBJ%2C Best hit);ORF_evidence=B6U7G3 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-CH-type (IPR011016),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J023149O05;Expression=AK072915;TENOR=Os08t0384900-01;KEGG=Os08t0384900-01
Chr08	irgsp1_rep	five_prime_UTR	18156707	18156919	.	+	.	Parent=Os08t0384900-01
Chr08	irgsp1_rep	five_prime_UTR	18157658	18157665	.	+	.	Parent=Os08t0384900-01
Chr08	irgsp1_rep	CDS	18157666	18157870	.	+	0	Parent=Os08t0384900-01
Chr08	irgsp1_rep	CDS	18158123	18158208	.	+	2	Parent=Os08t0384900-01
Chr08	irgsp1_rep	CDS	18159043	18159189	.	+	0	Parent=Os08t0384900-01
Chr08	irgsp1_rep	CDS	18159953	18160076	.	+	0	Parent=Os08t0384900-01
Chr08	irgsp1_rep	CDS	18160231	18160518	.	+	2	Parent=Os08t0384900-01
Chr08	irgsp1_rep	CDS	18160631	18160725	.	+	2	Parent=Os08t0384900-01
Chr08	irgsp1_rep	three_prime_UTR	18160726	18160976	.	+	.	Parent=Os08t0384900-01
Chr08	irgsp1_rep	mRNA	18161142	18161597	.	-	.	ID=Os08t0385000-01;Name=Os08t0385000-01;Locus_id=Os08g0385000;Note=Similar to seed maturation protein PM41.;Transcript_evidence=AK107755 (DDBJ%2C Best hit);ORF_evidence=NP_001148039.1 (RefSeq);NIAS_FLcDNA=002-133-A03;Expression=AK107755;TENOR=Os08t0385000-01;KEGG=Os08t0385000-01
Chr08	irgsp1_rep	five_prime_UTR	18161542	18161597	.	-	.	Parent=Os08t0385000-01
Chr08	irgsp1_rep	CDS	18161266	18161541	.	-	0	Parent=Os08t0385000-01
Chr08	irgsp1_rep	three_prime_UTR	18161142	18161265	.	-	.	Parent=Os08t0385000-01
Chr08	irgsp1_rep	mRNA	18168729	18172195	.	+	.	ID=Os08t0385400-01;Name=Os08t0385400-01;Locus_id=Os08g0385400;Note=Conserved hypothetical protein.;Transcript_evidence=AK241789 (DDBJ%2C Best hit);ORF_evidence=NP_001175552.1 (RefSeq);NIAS_FLcDNA=J065207L22;TENOR=Os08t0385400-01;KEGG=Os08t0385400-01
Chr08	irgsp1_rep	five_prime_UTR	18168729	18168935	.	+	.	Parent=Os08t0385400-01
Chr08	irgsp1_rep	CDS	18168936	18169244	.	+	0	Parent=Os08t0385400-01
Chr08	irgsp1_rep	three_prime_UTR	18169245	18169915	.	+	.	Parent=Os08t0385400-01
Chr08	irgsp1_rep	three_prime_UTR	18170582	18171631	.	+	.	Parent=Os08t0385400-01
Chr08	irgsp1_rep	three_prime_UTR	18171869	18172195	.	+	.	Parent=Os08t0385400-01
Chr08	irgsp1_rep	mRNA	18185542	18185967	.	+	.	ID=Os08t0385650-00;Name=Os08t0385650-00;Locus_id=Os08g0385650;Note=Hypothetical conserved gene.;Transcript_evidence=BT019195 (DDBJ);ORF_evidence=Q6YW55 (UniProt);TENOR=Os08t0385650-00;KEGG=Os08t0385650-00
Chr08	irgsp1_rep	five_prime_UTR	18185542	18185613	.	+	.	Parent=Os08t0385650-00
Chr08	irgsp1_rep	CDS	18185614	18185967	.	+	0	Parent=Os08t0385650-00
Chr08	irgsp1_rep	mRNA	18188620	18188766	.	-	.	ID=Os08t0385775-00;Name=Os08t0385775-00;Locus_id=Os08g0385775;Note=Non-protein coding transcript.;Transcript_evidence=AM234775 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0385775-00
Chr08	irgsp1_rep	exon	18188620	18188766	.	-	.	Parent=Os08t0385775-00
Chr08	irgsp1_rep	mRNA	18189406	18195703	.	+	.	ID=Os08t0385900-01;Name=Os08t0385900-01;Locus_id=Os08g0385900;Note=Similar to Transformer-2-like protein.;Transcript_evidence=AK070807 (DDBJ%2C Best hit);ORF_evidence=B6T623 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023069P08;Expression=AK070807;TENOR=Os08t0385900-01;KEGG=Os08t0385900-01
Chr08	irgsp1_rep	five_prime_UTR	18189406	18189568	.	+	.	Parent=Os08t0385900-01
Chr08	irgsp1_rep	five_prime_UTR	18189973	18190014	.	+	.	Parent=Os08t0385900-01
Chr08	irgsp1_rep	CDS	18191387	18191409	.	+	0	Parent=Os08t0385900-01
Chr08	irgsp1_rep	CDS	18191488	18191701	.	+	1	Parent=Os08t0385900-01
Chr08	irgsp1_rep	CDS	18192085	18192195	.	+	0	Parent=Os08t0385900-01
Chr08	irgsp1_rep	CDS	18192312	18192461	.	+	0	Parent=Os08t0385900-01
Chr08	irgsp1_rep	CDS	18194324	18194378	.	+	0	Parent=Os08t0385900-01
Chr08	irgsp1_rep	CDS	18195152	18195438	.	+	2	Parent=Os08t0385900-01
Chr08	irgsp1_rep	three_prime_UTR	18195439	18195703	.	+	.	Parent=Os08t0385900-01
Chr08	irgsp1_rep	mRNA	18200653	18200884	.	+	.	ID=Os08t0386125-00;Name=Os08t0386125-00;Locus_id=Os08g0386125;Note=Hypothetical protein.;Transcript_evidence=EU975883 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0386125-00
Chr08	irgsp1_rep	CDS	18200653	18200884	.	+	0	Parent=Os08t0386125-00
Chr08	irgsp1_rep	mRNA	18220044	18221513	.	+	.	ID=Os08t0386200-01;Name=Os08t0386200-01;Locus_id=Os08g0386200;CGSNL Gene Symbol=WRKY69;CGSNL Gene Name=WRKY GENE 69;Oryzabase Gene Symbol Synonym(s)=OsWRKY69;Oryzabase Gene Name Synonym(s)=Rice WRKY gene69;Note=WRKY transcription factor 69.;Transcript_evidence=AK111606 (DDBJ%2C Best hit);ORF_evidence=Q6IEL2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);NIAS_FLcDNA=J013102P22;Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6584;Expression=AK111606;TENOR=Os08t0386200-01;KEGG=Os08t0386200-01
Chr08	irgsp1_rep	five_prime_UTR	18220044	18220178	.	+	.	Parent=Os08t0386200-01
Chr08	irgsp1_rep	CDS	18220179	18220498	.	+	0	Parent=Os08t0386200-01
Chr08	irgsp1_rep	CDS	18220593	18221232	.	+	1	Parent=Os08t0386200-01
Chr08	irgsp1_rep	three_prime_UTR	18221233	18221513	.	+	.	Parent=Os08t0386200-01
Chr08	irgsp1_rep	mRNA	18221801	18224014	.	-	.	ID=Os08t0386300-01;Name=Os08t0386300-01;Locus_id=Os08g0386300;Note=CytoChrome b5 domain containing protein.;Transcript_evidence=AK059323 (DDBJ%2C Best hit);ORF_evidence=B6UG94 (UniProt);GO=Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome b5 (IPR001199),CytoChrome b5%2C heme-binding site (IPR018506);NIAS_FLcDNA=001-025-H10;Expression=AK059323;TENOR=Os08t0386300-01;KEGG=Os08t0386300-01
Chr08	irgsp1_rep	five_prime_UTR	18223809	18224014	.	-	.	Parent=Os08t0386300-01
Chr08	irgsp1_rep	five_prime_UTR	18223638	18223657	.	-	.	Parent=Os08t0386300-01
Chr08	irgsp1_rep	CDS	18223556	18223637	.	-	0	Parent=Os08t0386300-01
Chr08	irgsp1_rep	CDS	18223436	18223473	.	-	2	Parent=Os08t0386300-01
Chr08	irgsp1_rep	CDS	18223078	18223155	.	-	0	Parent=Os08t0386300-01
Chr08	irgsp1_rep	CDS	18222879	18222970	.	-	0	Parent=Os08t0386300-01
Chr08	irgsp1_rep	CDS	18222058	18222127	.	-	1	Parent=Os08t0386300-01
Chr08	irgsp1_rep	three_prime_UTR	18221801	18222057	.	-	.	Parent=Os08t0386300-01
Chr08	irgsp1_rep	mRNA	18221715	18223954	.	-	.	ID=Os08t0386300-02;Name=Os08t0386300-02;Locus_id=Os08g0386300;Note=CytoChrome b5 domain containing protein.;Transcript_evidence=AK070379 (DDBJ%2C Best hit);ORF_evidence=B6UG94 (UniProt);GO=Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome b5 (IPR001199),CytoChrome b5%2C heme-binding site (IPR018506);NIAS_FLcDNA=J023054P20;Expression=AK070379;TENOR=Os08t0386300-02;KEGG=Os08t0386300-02
Chr08	irgsp1_rep	five_prime_UTR	18223809	18223954	.	-	.	Parent=Os08t0386300-02
Chr08	irgsp1_rep	five_prime_UTR	18223638	18223657	.	-	.	Parent=Os08t0386300-02
Chr08	irgsp1_rep	CDS	18223556	18223637	.	-	0	Parent=Os08t0386300-02
Chr08	irgsp1_rep	CDS	18223436	18223473	.	-	2	Parent=Os08t0386300-02
Chr08	irgsp1_rep	CDS	18223078	18223155	.	-	0	Parent=Os08t0386300-02
Chr08	irgsp1_rep	CDS	18222879	18222970	.	-	0	Parent=Os08t0386300-02
Chr08	irgsp1_rep	CDS	18222058	18222127	.	-	1	Parent=Os08t0386300-02
Chr08	irgsp1_rep	three_prime_UTR	18221715	18222057	.	-	.	Parent=Os08t0386300-02
Chr08	irgsp1_rep	mRNA	18243582	18249438	.	+	.	ID=Os08t0386700-01;Name=Os08t0386700-01;Locus_id=Os08g0386700;Note=Similar to Avr9 elicitor response protein-like.;Transcript_evidence=AK069501 (DDBJ%2C Best hit);ORF_evidence=Q8L6H3 (UniProt);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Glycosyl transferase%2C family 31 (IPR002659);NIAS_FLcDNA=J023020A13;Expression=AK069501;TENOR=Os08t0386700-01;KEGG=Os08t0386700-01
Chr08	irgsp1_rep	five_prime_UTR	18243582	18243932	.	+	.	Parent=Os08t0386700-01
Chr08	irgsp1_rep	CDS	18243933	18244048	.	+	0	Parent=Os08t0386700-01
Chr08	irgsp1_rep	CDS	18244407	18244470	.	+	1	Parent=Os08t0386700-01
Chr08	irgsp1_rep	CDS	18244575	18244624	.	+	0	Parent=Os08t0386700-01
Chr08	irgsp1_rep	CDS	18244829	18245022	.	+	1	Parent=Os08t0386700-01
Chr08	irgsp1_rep	CDS	18245564	18245627	.	+	2	Parent=Os08t0386700-01
Chr08	irgsp1_rep	CDS	18245700	18245772	.	+	1	Parent=Os08t0386700-01
Chr08	irgsp1_rep	CDS	18246123	18246246	.	+	0	Parent=Os08t0386700-01
Chr08	irgsp1_rep	CDS	18246732	18246819	.	+	2	Parent=Os08t0386700-01
Chr08	irgsp1_rep	CDS	18246905	18246955	.	+	1	Parent=Os08t0386700-01
Chr08	irgsp1_rep	CDS	18247059	18247130	.	+	1	Parent=Os08t0386700-01
Chr08	irgsp1_rep	CDS	18247240	18247352	.	+	1	Parent=Os08t0386700-01
Chr08	irgsp1_rep	CDS	18249023	18249045	.	+	2	Parent=Os08t0386700-01
Chr08	irgsp1_rep	three_prime_UTR	18249046	18249438	.	+	.	Parent=Os08t0386700-01
Chr08	irgsp1_rep	mRNA	18251997	18257508	.	+	.	ID=Os08t0386800-01;Name=Os08t0386800-01;Locus_id=Os08g0386800;Note=Adenine nucleotide translocator 1 domain containing protein.;Transcript_evidence=AK119576 (DDBJ%2C Best hit);ORF_evidence=NP_567790.1 (RefSeq);InterPro=Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=002-117-B05;Expression=AK119576;TENOR=Os08t0386800-01;KEGG=Os08t0386800-01
Chr08	irgsp1_rep	five_prime_UTR	18251997	18252173	.	+	.	Parent=Os08t0386800-01
Chr08	irgsp1_rep	CDS	18252174	18252458	.	+	0	Parent=Os08t0386800-01
Chr08	irgsp1_rep	CDS	18252550	18252624	.	+	0	Parent=Os08t0386800-01
Chr08	irgsp1_rep	CDS	18253744	18253872	.	+	0	Parent=Os08t0386800-01
Chr08	irgsp1_rep	CDS	18253967	18254026	.	+	0	Parent=Os08t0386800-01
Chr08	irgsp1_rep	CDS	18254512	18254682	.	+	0	Parent=Os08t0386800-01
Chr08	irgsp1_rep	CDS	18254837	18254930	.	+	0	Parent=Os08t0386800-01
Chr08	irgsp1_rep	CDS	18255101	18255192	.	+	2	Parent=Os08t0386800-01
Chr08	irgsp1_rep	CDS	18255312	18255461	.	+	0	Parent=Os08t0386800-01
Chr08	irgsp1_rep	CDS	18255648	18255706	.	+	0	Parent=Os08t0386800-01
Chr08	irgsp1_rep	CDS	18256976	18257105	.	+	1	Parent=Os08t0386800-01
Chr08	irgsp1_rep	three_prime_UTR	18257106	18257123	.	+	.	Parent=Os08t0386800-01
Chr08	irgsp1_rep	three_prime_UTR	18257215	18257508	.	+	.	Parent=Os08t0386800-01
Chr08	irgsp1_rep	mRNA	18252033	18257508	.	+	.	ID=Os08t0386800-02;Name=Os08t0386800-02;Locus_id=Os08g0386800;Note=Adenine nucleotide translocator 1 domain containing protein.;Transcript_evidence=AK073889 (DDBJ%2C Best hit);ORF_evidence=NP_567790.1 (RefSeq);InterPro=Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J033075G13;Expression=AK073889;TENOR=Os08t0386800-02;KEGG=Os08t0386800-02
Chr08	irgsp1_rep	five_prime_UTR	18252033	18252173	.	+	.	Parent=Os08t0386800-02
Chr08	irgsp1_rep	CDS	18252174	18252458	.	+	0	Parent=Os08t0386800-02
Chr08	irgsp1_rep	CDS	18252550	18252624	.	+	0	Parent=Os08t0386800-02
Chr08	irgsp1_rep	CDS	18253744	18253872	.	+	0	Parent=Os08t0386800-02
Chr08	irgsp1_rep	CDS	18253967	18254026	.	+	0	Parent=Os08t0386800-02
Chr08	irgsp1_rep	CDS	18254512	18254682	.	+	0	Parent=Os08t0386800-02
Chr08	irgsp1_rep	CDS	18254837	18254930	.	+	0	Parent=Os08t0386800-02
Chr08	irgsp1_rep	CDS	18255101	18255192	.	+	2	Parent=Os08t0386800-02
Chr08	irgsp1_rep	CDS	18255312	18255461	.	+	0	Parent=Os08t0386800-02
Chr08	irgsp1_rep	CDS	18255648	18255706	.	+	0	Parent=Os08t0386800-02
Chr08	irgsp1_rep	CDS	18256976	18257105	.	+	1	Parent=Os08t0386800-02
Chr08	irgsp1_rep	three_prime_UTR	18257106	18257508	.	+	.	Parent=Os08t0386800-02
Chr08	irgsp1_rep	mRNA	18252034	18252941	.	+	.	ID=Os08t0386800-03;Name=Os08t0386800-03;Locus_id=Os08g0386800;Note=Hypothetical conserved gene.;Transcript_evidence=AK108397 (DDBJ%2C Best hit);ORF_evidence=Q6ZA14 (UniProt);InterPro=Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=002-142-F11;Expression=AK108397;TENOR=Os08t0386800-03;KEGG=Os08t0386800-03
Chr08	irgsp1_rep	five_prime_UTR	18252034	18252173	.	+	.	Parent=Os08t0386800-03
Chr08	irgsp1_rep	CDS	18252174	18252458	.	+	0	Parent=Os08t0386800-03
Chr08	irgsp1_rep	CDS	18252550	18252678	.	+	0	Parent=Os08t0386800-03
Chr08	irgsp1_rep	three_prime_UTR	18252679	18252941	.	+	.	Parent=Os08t0386800-03
Chr08	irgsp1_rep	mRNA	18266806	18269441	.	+	.	ID=Os08t0386900-01;Name=Os08t0386900-01;Locus_id=Os08g0386900;Note=Similar to GC4 (golgin candidate 4).;Transcript_evidence=AK058827 (DDBJ%2C Best hit);ORF_evidence=NP_850447.1 (RefSeq);NIAS_FLcDNA=001-003-H08;TENOR=Os08t0386900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	18266806	18266807	.	+	.	Parent=Os08t0386900-01
Chr08	irgsp1_rep	CDS	18266808	18266843	.	+	0	Parent=Os08t0386900-01
Chr08	irgsp1_rep	CDS	18267033	18267329	.	+	0	Parent=Os08t0386900-01
Chr08	irgsp1_rep	CDS	18267432	18267497	.	+	0	Parent=Os08t0386900-01
Chr08	irgsp1_rep	CDS	18267718	18267920	.	+	0	Parent=Os08t0386900-01
Chr08	irgsp1_rep	CDS	18268419	18268473	.	+	1	Parent=Os08t0386900-01
Chr08	irgsp1_rep	CDS	18268559	18268744	.	+	0	Parent=Os08t0386900-01
Chr08	irgsp1_rep	CDS	18268942	18269226	.	+	0	Parent=Os08t0386900-01
Chr08	irgsp1_rep	three_prime_UTR	18269227	18269441	.	+	.	Parent=Os08t0386900-01
Chr08	irgsp1_rep	mRNA	18277581	18280448	.	-	.	ID=Os08t0387050-01;Name=Os08t0387050-01;Locus_id=Os08g0387050;Note=Conserved hypothetical protein.;Transcript_evidence=AK240743 (DDBJ%2C Best hit);ORF_evidence=NP_001175553.1 (RefSeq);NIAS_FLcDNA=J043038F21;TENOR=Os08t0387050-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	18280447	18280448	.	-	.	Parent=Os08t0387050-01
Chr08	irgsp1_rep	CDS	18280045	18280446	.	-	0	Parent=Os08t0387050-01
Chr08	irgsp1_rep	three_prime_UTR	18277581	18280044	.	-	.	Parent=Os08t0387050-01
Chr08	irgsp1_rep	mRNA	18291874	18299136	.	+	.	ID=Os08t0387200-01;Name=Os08t0387200-01;Locus_id=Os08g0387200;Oryzabase Gene Name Synonym(s)=RING finger-like protein;Note=Protein of unknown function DUF81 family protein.;Transcript_evidence=AK120787 (DDBJ%2C Best hit);ORF_evidence=B7EAG5 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Protein of unknown function DUF81 (IPR002781);NIAS_FLcDNA=J023011G24;Oryzabase=16040;Expression=AK120787;TENOR=Os08t0387200-01;KEGG=Os08t0387200-01
Chr08	irgsp1_rep	five_prime_UTR	18291874	18292106	.	+	.	Parent=Os08t0387200-01
Chr08	irgsp1_rep	five_prime_UTR	18292709	18292717	.	+	.	Parent=Os08t0387200-01
Chr08	irgsp1_rep	CDS	18292718	18292930	.	+	0	Parent=Os08t0387200-01
Chr08	irgsp1_rep	CDS	18293430	18293589	.	+	0	Parent=Os08t0387200-01
Chr08	irgsp1_rep	CDS	18295165	18295365	.	+	2	Parent=Os08t0387200-01
Chr08	irgsp1_rep	CDS	18295457	18295521	.	+	2	Parent=Os08t0387200-01
Chr08	irgsp1_rep	CDS	18295706	18295733	.	+	0	Parent=Os08t0387200-01
Chr08	irgsp1_rep	CDS	18295809	18295870	.	+	2	Parent=Os08t0387200-01
Chr08	irgsp1_rep	CDS	18296126	18296212	.	+	0	Parent=Os08t0387200-01
Chr08	irgsp1_rep	CDS	18296551	18296601	.	+	0	Parent=Os08t0387200-01
Chr08	irgsp1_rep	CDS	18296904	18297125	.	+	0	Parent=Os08t0387200-01
Chr08	irgsp1_rep	CDS	18298389	18298482	.	+	0	Parent=Os08t0387200-01
Chr08	irgsp1_rep	CDS	18298590	18298730	.	+	2	Parent=Os08t0387200-01
Chr08	irgsp1_rep	CDS	18298828	18298913	.	+	2	Parent=Os08t0387200-01
Chr08	irgsp1_rep	three_prime_UTR	18298914	18299136	.	+	.	Parent=Os08t0387200-01
Chr08	irgsp1_rep	mRNA	18299461	18299571	.	+	.	ID=Os08t0387300-00;Name=Os08t0387300-00;Locus_id=Os08g0387300;Note=Conserved hypothetical protein.;Transcript_evidence=X06283 (DDBJ);ORF_evidence=D7SIW8 (UniProt);TENOR=Os08t0387300-00
Chr08	irgsp1_rep	CDS	18299461	18299571	.	+	0	Parent=Os08t0387300-00
Chr08	irgsp1_rep	mRNA	18305366	18309363	.	+	.	ID=Os08t0387400-01;Name=Os08t0387400-01;Locus_id=Os08g0387400;CGSNL Gene Symbol=GH9B13;CGSNL Gene Name=GLYCOSIDE HYDROLASE 9B13;Oryzabase Gene Symbol Synonym(s)=OsGH9B13;Oryzabase Gene Name Synonym(s)=glycoside hydrolase OsGH9B13%2C glycoside hydrolase 9B13;Note=Similar to Cellulase (Fragment).;Transcript_evidence=AK071784 (DDBJ%2C Best hit);ORF_evidence=Q6ZA06 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 9 (IPR001701),Six-hairpin glycosidase-like (IPR008928),Six-hairpin glycosidase (IPR012341);NIAS_FLcDNA=J023107N20;Oryzabase=11713;Expression=AK071784;TENOR=Os08t0387400-01;KEGG=Os08t0387400-01
Chr08	irgsp1_rep	five_prime_UTR	18305366	18305484	.	+	.	Parent=Os08t0387400-01
Chr08	irgsp1_rep	CDS	18305485	18305727	.	+	0	Parent=Os08t0387400-01
Chr08	irgsp1_rep	CDS	18307178	18307594	.	+	0	Parent=Os08t0387400-01
Chr08	irgsp1_rep	CDS	18307921	18307998	.	+	0	Parent=Os08t0387400-01
Chr08	irgsp1_rep	CDS	18308134	18308286	.	+	0	Parent=Os08t0387400-01
Chr08	irgsp1_rep	CDS	18308372	18308480	.	+	0	Parent=Os08t0387400-01
Chr08	irgsp1_rep	CDS	18308562	18308728	.	+	2	Parent=Os08t0387400-01
Chr08	irgsp1_rep	CDS	18308812	18309195	.	+	0	Parent=Os08t0387400-01
Chr08	irgsp1_rep	three_prime_UTR	18309196	18309363	.	+	.	Parent=Os08t0387400-01
Chr08	irgsp1_rep	mRNA	18305566	18309107	.	-	.	ID=Os08t0387450-00;Name=Os08t0387450-00;Locus_id=Os08g0387450;Note=Non-protein coding transcript.;Transcript_evidence=tplb0042g22 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os08t0387450-00
Chr08	irgsp1_rep	exon	18308598	18309107	.	-	.	Parent=Os08t0387450-00
Chr08	irgsp1_rep	exon	18308072	18308376	.	-	.	Parent=Os08t0387450-00
Chr08	irgsp1_rep	exon	18307199	18307623	.	-	.	Parent=Os08t0387450-00
Chr08	irgsp1_rep	exon	18305566	18305744	.	-	.	Parent=Os08t0387450-00
Chr08	irgsp1_rep	mRNA	18309597	18312142	.	-	.	ID=Os08t0387500-01;Name=Os08t0387500-01;Locus_id=Os08g0387500;Note=Similar to Sulfated surface glycoprotein 185 precursor (SSG 185).;Transcript_evidence=AK105106 (DDBJ%2C Best hit);ORF_evidence=A2YUV2 (UniProt);NIAS_FLcDNA=001-100-E10;Expression=AK105106;TENOR=Os08t0387500-01;KEGG=Os08t0387500-01
Chr08	irgsp1_rep	five_prime_UTR	18312003	18312142	.	-	.	Parent=Os08t0387500-01
Chr08	irgsp1_rep	CDS	18311700	18312002	.	-	0	Parent=Os08t0387500-01
Chr08	irgsp1_rep	CDS	18311200	18311237	.	-	0	Parent=Os08t0387500-01
Chr08	irgsp1_rep	CDS	18310721	18310988	.	-	1	Parent=Os08t0387500-01
Chr08	irgsp1_rep	CDS	18310144	18310424	.	-	0	Parent=Os08t0387500-01
Chr08	irgsp1_rep	CDS	18309635	18310067	.	-	1	Parent=Os08t0387500-01
Chr08	irgsp1_rep	three_prime_UTR	18309597	18309634	.	-	.	Parent=Os08t0387500-01
Chr08	irgsp1_rep	mRNA	18313966	18314275	.	+	.	ID=Os08t0387600-00;Name=Os08t0387600-00;Locus_id=Os08g0387600;Note=Hypothetical protein.;Transcript_evidence=tplb0011f16 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0387600-00
Chr08	irgsp1_rep	CDS	18313966	18314275	.	+	0	Parent=Os08t0387600-00
Chr08	irgsp1_rep	mRNA	18319098	18329913	.	-	.	ID=Os08t0387700-01;Name=Os08t0387700-01;Locus_id=Os08g0387700;Note=NB-ARC domain containing protein.;Transcript_evidence=AK069497 (DDBJ%2C Best hit);ORF_evidence=Q6ZA03 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: protein binding (GO:0005515),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),Leucine-rich repeat (IPR001611),NB-ARC (IPR002182),ATPase%2C AAA+ type%2C core (IPR003593);NIAS_FLcDNA=J023024B17;Expression=AK069497;TENOR=Os08t0387700-01;KEGG=Os08t0387700-01
Chr08	irgsp1_rep	five_prime_UTR	18329829	18329913	.	-	.	Parent=Os08t0387700-01
Chr08	irgsp1_rep	CDS	18329008	18329828	.	-	0	Parent=Os08t0387700-01
Chr08	irgsp1_rep	CDS	18320688	18322630	.	-	1	Parent=Os08t0387700-01
Chr08	irgsp1_rep	CDS	18320579	18320592	.	-	2	Parent=Os08t0387700-01
Chr08	irgsp1_rep	three_prime_UTR	18320533	18320578	.	-	.	Parent=Os08t0387700-01
Chr08	irgsp1_rep	three_prime_UTR	18319098	18319383	.	-	.	Parent=Os08t0387700-01
Chr08	irgsp1_rep	mRNA	18328745	18329909	.	-	.	ID=Os08t0387700-02;Name=Os08t0387700-02;Locus_id=Os08g0387700;Note=Hypothetical conserved gene.;Transcript_evidence=AK063348 (DDBJ%2C Best hit);ORF_evidence=Q6Z012 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);NIAS_FLcDNA=001-114-B10;Expression=AK063348;TENOR=Os08t0387700-02;KEGG=Os08t0387700-02
Chr08	irgsp1_rep	five_prime_UTR	18329829	18329909	.	-	.	Parent=Os08t0387700-02
Chr08	irgsp1_rep	CDS	18328926	18329828	.	-	0	Parent=Os08t0387700-02
Chr08	irgsp1_rep	three_prime_UTR	18328745	18328925	.	-	.	Parent=Os08t0387700-02
Chr08	irgsp1_rep	mRNA	18319225	18324539	.	-	.	ID=Os08t0387700-03;Name=Os08t0387700-03;Locus_id=Os08g0387700;Note=Hypothetical conserved gene.;Transcript_evidence=AK069246 (DDBJ%2C Best hit);ORF_evidence=Q6ZA03 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: ADP binding (GO:0043531);InterPro=Leucine-rich repeat (IPR001611),NB-ARC (IPR002182);NIAS_FLcDNA=J023018H21;Expression=AK069246;TENOR=Os08t0387700-03;KEGG=Os08t0387700-03
Chr08	irgsp1_rep	five_prime_UTR	18324435	18324539	.	-	.	Parent=Os08t0387700-03
Chr08	irgsp1_rep	five_prime_UTR	18322594	18322630	.	-	.	Parent=Os08t0387700-03
Chr08	irgsp1_rep	CDS	18320688	18322593	.	-	0	Parent=Os08t0387700-03
Chr08	irgsp1_rep	CDS	18320579	18320592	.	-	2	Parent=Os08t0387700-03
Chr08	irgsp1_rep	three_prime_UTR	18320533	18320578	.	-	.	Parent=Os08t0387700-03
Chr08	irgsp1_rep	three_prime_UTR	18319225	18319383	.	-	.	Parent=Os08t0387700-03
Chr08	irgsp1_rep	mRNA	18327183	18327959	.	-	.	ID=Os08t0388150-00;Name=Os08t0388150-00;Locus_id=Os08g0388150;Note=Similar to Thaumatin-like protein TLP7.;Transcript_evidence=FP096319 (DDBJ);ORF_evidence=Q946Y9 (UniProt);InterPro=Thaumatin%2C pathogenesis-related (IPR001938);TENOR=Os08t0388150-00
Chr08	irgsp1_rep	CDS	18327183	18327959	.	-	0	Parent=Os08t0388150-00
Chr08	irgsp1_rep	mRNA	18345865	18359035	.	+	.	ID=Os08t0388300-01;Name=Os08t0388300-01;Locus_id=Os08g0388300;Note=NB-ARC domain containing protein.;Transcript_evidence=AK103311 (DDBJ%2C Best hit);ORF_evidence=B9G0Q3 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182),ATPase%2C AAA+ type%2C core (IPR003593);NIAS_FLcDNA=J033125G18;Expression=AK103311;TENOR=Os08t0388300-01;KEGG=Os08t0388300-01
Chr08	irgsp1_rep	five_prime_UTR	18345865	18346021	.	+	.	Parent=Os08t0388300-01
Chr08	irgsp1_rep	CDS	18346022	18346833	.	+	0	Parent=Os08t0388300-01
Chr08	irgsp1_rep	CDS	18355126	18357165	.	+	1	Parent=Os08t0388300-01
Chr08	irgsp1_rep	CDS	18357271	18357343	.	+	1	Parent=Os08t0388300-01
Chr08	irgsp1_rep	three_prime_UTR	18357344	18357344	.	+	.	Parent=Os08t0388300-01
Chr08	irgsp1_rep	three_prime_UTR	18357819	18357849	.	+	.	Parent=Os08t0388300-01
Chr08	irgsp1_rep	three_prime_UTR	18358619	18359035	.	+	.	Parent=Os08t0388300-01
Chr08	irgsp1_rep	mRNA	18345905	18359037	.	+	.	ID=Os08t0388300-02;Name=Os08t0388300-02;Locus_id=Os08g0388300;Note=Hypothetical conserved gene.;Transcript_evidence=AK066779 (DDBJ%2C Best hit);ORF_evidence=B9G0Q3 (UniProt);NIAS_FLcDNA=J013077A22;Expression=AK066779;TENOR=Os08t0388300-02;KEGG=Os08t0388300-02
Chr08	irgsp1_rep	five_prime_UTR	18345905	18346021	.	+	.	Parent=Os08t0388300-02
Chr08	irgsp1_rep	CDS	18346022	18346483	.	+	0	Parent=Os08t0388300-02
Chr08	irgsp1_rep	CDS	18346569	18346643	.	+	0	Parent=Os08t0388300-02
Chr08	irgsp1_rep	three_prime_UTR	18346644	18346833	.	+	.	Parent=Os08t0388300-02
Chr08	irgsp1_rep	three_prime_UTR	18355126	18357165	.	+	.	Parent=Os08t0388300-02
Chr08	irgsp1_rep	three_prime_UTR	18357271	18357344	.	+	.	Parent=Os08t0388300-02
Chr08	irgsp1_rep	three_prime_UTR	18358619	18359037	.	+	.	Parent=Os08t0388300-02
Chr08	irgsp1_rep	mRNA	18371708	18379608	.	+	.	ID=Os08t0388900-00;Name=Os08t0388900-00;Locus_id=Os08g0388900;Note=Similar to para-hydroxybenzoate--polyprenyltransferase.;Transcript_evidence=BT055919 (DDBJ);ORF_evidence=NP_001148558.1 (RefSeq);GO=Biological Process: biosynthetic process (GO:0009058),Cellular Component: integral to membrane (GO:0016021),Molecular Function: prenyltransferase activity (GO:0004659);InterPro=UbiA prenyltransferase family (IPR000537),4-hydroxybenzoate polyprenyl transferase (IPR006370);TENOR=Os08t0388900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	18371708	18372180	.	+	0	Parent=Os08t0388900-00
Chr08	irgsp1_rep	CDS	18372494	18372629	.	+	1	Parent=Os08t0388900-00
Chr08	irgsp1_rep	CDS	18378175	18378296	.	+	0	Parent=Os08t0388900-00
Chr08	irgsp1_rep	CDS	18378611	18378680	.	+	1	Parent=Os08t0388900-00
Chr08	irgsp1_rep	CDS	18378771	18378920	.	+	0	Parent=Os08t0388900-00
Chr08	irgsp1_rep	CDS	18379017	18379152	.	+	0	Parent=Os08t0388900-00
Chr08	irgsp1_rep	CDS	18379241	18379337	.	+	2	Parent=Os08t0388900-00
Chr08	irgsp1_rep	CDS	18379434	18379503	.	+	1	Parent=Os08t0388900-00
Chr08	irgsp1_rep	three_prime_UTR	18379504	18379608	.	+	.	Parent=Os08t0388900-00
Chr08	irgsp1_rep	mRNA	18398361	18407618	.	+	.	ID=Os08t0389300-00;Name=Os08t0389300-00;Locus_id=Os08g0389300;Note=UbiA prenyltransferase family domain containing protein.;Transcript_evidence=AK369423 (DDBJ);ORF_evidence=A2YUV6 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021),Molecular Function: prenyltransferase activity (GO:0004659);InterPro=UbiA prenyltransferase family (IPR000537);TENOR=Os08t0389300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	18398361	18398847	.	+	.	Parent=Os08t0389300-00
Chr08	irgsp1_rep	five_prime_UTR	18399045	18399544	.	+	.	Parent=Os08t0389300-00
Chr08	irgsp1_rep	five_prime_UTR	18406151	18406271	.	+	.	Parent=Os08t0389300-00
Chr08	irgsp1_rep	CDS	18406272	18406360	.	+	0	Parent=Os08t0389300-00
Chr08	irgsp1_rep	CDS	18406719	18406788	.	+	1	Parent=Os08t0389300-00
Chr08	irgsp1_rep	CDS	18406875	18407024	.	+	0	Parent=Os08t0389300-00
Chr08	irgsp1_rep	CDS	18407122	18407257	.	+	0	Parent=Os08t0389300-00
Chr08	irgsp1_rep	CDS	18407346	18407442	.	+	2	Parent=Os08t0389300-00
Chr08	irgsp1_rep	CDS	18407539	18407608	.	+	1	Parent=Os08t0389300-00
Chr08	irgsp1_rep	three_prime_UTR	18407609	18407618	.	+	.	Parent=Os08t0389300-00
Chr08	irgsp1_rep	mRNA	18449766	18450279	.	-	.	ID=Os08t0389601-01;Name=Os08t0389601-01;Locus_id=Os08g0389601;Note=Non-protein coding transcript.;Transcript_evidence=AK241745 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065202D20;TENOR=Os08t0389601-01
Chr08	irgsp1_rep	exon	18449766	18450279	.	-	.	Parent=Os08t0389601-01
Chr08	irgsp1_rep	mRNA	18452698	18454473	.	+	.	ID=Os08t0389700-01;Name=Os08t0389700-01;Locus_id=Os08g0389700;Note=Conserved hypothetical protein.;Transcript_evidence=AK105152 (DDBJ%2C Best hit);ORF_evidence=Q6Z000 (UniProt);NIAS_FLcDNA=001-103-F02;TENOR=Os08t0389700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	18452698	18452856	.	+	.	Parent=Os08t0389700-01
Chr08	irgsp1_rep	five_prime_UTR	18453023	18453061	.	+	.	Parent=Os08t0389700-01
Chr08	irgsp1_rep	CDS	18453062	18453236	.	+	0	Parent=Os08t0389700-01
Chr08	irgsp1_rep	CDS	18454193	18454294	.	+	2	Parent=Os08t0389700-01
Chr08	irgsp1_rep	CDS	18454382	18454434	.	+	2	Parent=Os08t0389700-01
Chr08	irgsp1_rep	three_prime_UTR	18454435	18454473	.	+	.	Parent=Os08t0389700-01
Chr08	irgsp1_rep	mRNA	18452699	18458055	.	+	.	ID=Os08t0389700-02;Name=Os08t0389700-02;Locus_id=Os08g0389700;Note=Protein of unknown function DUF81 family protein.;Transcript_evidence=AK065108 (DDBJ%2C Best hit);ORF_evidence=Q00M73 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Protein of unknown function DUF81 (IPR002781);NIAS_FLcDNA=J013001N20;Expression=AK065108;TENOR=Os08t0389700-02;KEGG=Os08t0389700-02
Chr08	irgsp1_rep	five_prime_UTR	18452699	18452856	.	+	.	Parent=Os08t0389700-02
Chr08	irgsp1_rep	five_prime_UTR	18453023	18453050	.	+	.	Parent=Os08t0389700-02
Chr08	irgsp1_rep	CDS	18453051	18453236	.	+	0	Parent=Os08t0389700-02
Chr08	irgsp1_rep	CDS	18454135	18454294	.	+	0	Parent=Os08t0389700-02
Chr08	irgsp1_rep	CDS	18455427	18455627	.	+	2	Parent=Os08t0389700-02
Chr08	irgsp1_rep	CDS	18455715	18455779	.	+	2	Parent=Os08t0389700-02
Chr08	irgsp1_rep	CDS	18455938	18455965	.	+	0	Parent=Os08t0389700-02
Chr08	irgsp1_rep	CDS	18456039	18456115	.	+	2	Parent=Os08t0389700-02
Chr08	irgsp1_rep	CDS	18456206	18456292	.	+	0	Parent=Os08t0389700-02
Chr08	irgsp1_rep	CDS	18456445	18456495	.	+	0	Parent=Os08t0389700-02
Chr08	irgsp1_rep	CDS	18456845	18457066	.	+	0	Parent=Os08t0389700-02
Chr08	irgsp1_rep	CDS	18457228	18457321	.	+	0	Parent=Os08t0389700-02
Chr08	irgsp1_rep	CDS	18457400	18457540	.	+	2	Parent=Os08t0389700-02
Chr08	irgsp1_rep	CDS	18457632	18457717	.	+	2	Parent=Os08t0389700-02
Chr08	irgsp1_rep	three_prime_UTR	18457718	18458055	.	+	.	Parent=Os08t0389700-02
Chr08	irgsp1_rep	mRNA	18452711	18454473	.	+	.	ID=Os08t0389700-03;Name=Os08t0389700-03;Locus_id=Os08g0389700;Note=Similar to cDNA clone:001-103-F02%2C full insert sequence.;Transcript_evidence=AK062953 (DDBJ%2C Best hit);ORF_evidence=B7EXL9 (UniProt);NIAS_FLcDNA=001-109-C10;Expression=AK062953;TENOR=Os08t0389700-03;KEGG=Os08t0389700-03
Chr08	irgsp1_rep	five_prime_UTR	18452711	18452856	.	+	.	Parent=Os08t0389700-03
Chr08	irgsp1_rep	five_prime_UTR	18453023	18453050	.	+	.	Parent=Os08t0389700-03
Chr08	irgsp1_rep	CDS	18453051	18453236	.	+	0	Parent=Os08t0389700-03
Chr08	irgsp1_rep	CDS	18454135	18454294	.	+	0	Parent=Os08t0389700-03
Chr08	irgsp1_rep	CDS	18454382	18454434	.	+	2	Parent=Os08t0389700-03
Chr08	irgsp1_rep	three_prime_UTR	18454435	18454473	.	+	.	Parent=Os08t0389700-03
Chr08	irgsp1_rep	mRNA	18474191	18480734	.	+	.	ID=Os08t0390000-01;Name=Os08t0390000-01;Locus_id=Os08g0390000;Oryzabase Gene Symbol Synonym(s)=BIP131;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 131%2C BRI1-interacting protein 131%2C brassinosteroid receptor kinase-interacting protein 131;Note=Moesin domain containing protein.;Transcript_evidence=AK099893 (DDBJ%2C Best hit);ORF_evidence=Q762B4 (UniProt);NIAS_FLcDNA=J013113F23;Oryzabase=13677;Expression=AK099893;TENOR=Os08t0390000-01;KEGG=Os08t0390000-01
Chr08	irgsp1_rep	five_prime_UTR	18474191	18474316	.	+	.	Parent=Os08t0390000-01
Chr08	irgsp1_rep	five_prime_UTR	18477534	18477553	.	+	.	Parent=Os08t0390000-01
Chr08	irgsp1_rep	CDS	18477554	18477910	.	+	0	Parent=Os08t0390000-01
Chr08	irgsp1_rep	CDS	18478142	18478336	.	+	0	Parent=Os08t0390000-01
Chr08	irgsp1_rep	CDS	18478424	18478603	.	+	0	Parent=Os08t0390000-01
Chr08	irgsp1_rep	CDS	18478703	18478897	.	+	0	Parent=Os08t0390000-01
Chr08	irgsp1_rep	CDS	18479322	18479420	.	+	0	Parent=Os08t0390000-01
Chr08	irgsp1_rep	CDS	18479512	18480021	.	+	0	Parent=Os08t0390000-01
Chr08	irgsp1_rep	CDS	18480137	18480466	.	+	0	Parent=Os08t0390000-01
Chr08	irgsp1_rep	three_prime_UTR	18480467	18480734	.	+	.	Parent=Os08t0390000-01
Chr08	irgsp1_rep	mRNA	18474215	18480781	.	+	.	ID=Os08t0390000-02;Name=Os08t0390000-02;Locus_id=Os08g0390000;Oryzabase Gene Symbol Synonym(s)=BIP131;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 131%2C BRI1-interacting protein 131%2C brassinosteroid receptor kinase-interacting protein 131;Note=Moesin domain containing protein.;Transcript_evidence=AK067513 (DDBJ%2C Best hit);ORF_evidence=Q762B4 (UniProt);NIAS_FLcDNA=J013110G07;Oryzabase=13677;Expression=AK067513;TENOR=Os08t0390000-02;KEGG=Os08t0390000-02
Chr08	irgsp1_rep	five_prime_UTR	18474215	18474316	.	+	.	Parent=Os08t0390000-02
Chr08	irgsp1_rep	five_prime_UTR	18477545	18477553	.	+	.	Parent=Os08t0390000-02
Chr08	irgsp1_rep	CDS	18477554	18477910	.	+	0	Parent=Os08t0390000-02
Chr08	irgsp1_rep	CDS	18478142	18478336	.	+	0	Parent=Os08t0390000-02
Chr08	irgsp1_rep	CDS	18478424	18478603	.	+	0	Parent=Os08t0390000-02
Chr08	irgsp1_rep	CDS	18478703	18478897	.	+	0	Parent=Os08t0390000-02
Chr08	irgsp1_rep	CDS	18479322	18479420	.	+	0	Parent=Os08t0390000-02
Chr08	irgsp1_rep	CDS	18479512	18480021	.	+	0	Parent=Os08t0390000-02
Chr08	irgsp1_rep	CDS	18480137	18480466	.	+	0	Parent=Os08t0390000-02
Chr08	irgsp1_rep	three_prime_UTR	18480467	18480781	.	+	.	Parent=Os08t0390000-02
Chr08	irgsp1_rep	mRNA	18480942	18486765	.	-	.	ID=Os08t0390100-01;Name=Os08t0390100-01;Locus_id=Os08g0390100;CGSNL Gene Symbol=DUF810.4;CGSNL Gene Name=DUF810 FAMILY MEMBER 4;Oryzabase Gene Symbol Synonym(s)=OsDUF810.4;Oryzabase Gene Name Synonym(s)=domains of unknown function 810.4%2C DUF810 family member 4;Note=Similar to predicted protein.;Transcript_evidence=AK242990 (DDBJ%2C Best hit);ORF_evidence=Q6ZBF5 (UniProt);InterPro=Protein of unknown function DUF810 (IPR008528),Munc13 homology 1 (IPR014770);NIAS_FLcDNA=J090095D13;Oryzabase=22674;TENOR=Os08t0390100-01;KEGG=Os08t0390100-01
Chr08	irgsp1_rep	five_prime_UTR	18486609	18486765	.	-	.	Parent=Os08t0390100-01
Chr08	irgsp1_rep	CDS	18486099	18486608	.	-	0	Parent=Os08t0390100-01
Chr08	irgsp1_rep	CDS	18483870	18484736	.	-	0	Parent=Os08t0390100-01
Chr08	irgsp1_rep	CDS	18483111	18483554	.	-	0	Parent=Os08t0390100-01
Chr08	irgsp1_rep	CDS	18482437	18482637	.	-	0	Parent=Os08t0390100-01
Chr08	irgsp1_rep	three_prime_UTR	18480942	18482436	.	-	.	Parent=Os08t0390100-01
Chr08	irgsp1_rep	mRNA	18491788	18493260	.	-	.	ID=Os08t0390200-01;Name=Os08t0390200-01;Locus_id=Os08g0390200;CGSNL Gene Symbol=2ODD28;CGSNL Gene Name=2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 28;Oryzabase Gene Symbol Synonym(s)=2-ODD28%2C Os2-ODD28%2C Os2ODD28;Oryzabase Gene Name Synonym(s)=2-oxoglutarate-dependent dioxygenase 28;Note=Similar to Oxidoreductase%2C 2OG-Fe oxygenase family protein%2C expressed.;Transcript_evidence=AK068286 (DDBJ%2C Best hit);ORF_evidence=Q10A95 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=J013149K15;Oryzabase=22629;TENOR=Os08t0390200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	18493259	18493260	.	-	.	Parent=Os08t0390200-01
Chr08	irgsp1_rep	CDS	18492002	18493258	.	-	0	Parent=Os08t0390200-01
Chr08	irgsp1_rep	three_prime_UTR	18491788	18492001	.	-	.	Parent=Os08t0390200-01
Chr08	irgsp1_rep	mRNA	18500158	18500663	.	+	.	ID=Os08t0390600-01;Name=Os08t0390600-01;Locus_id=Os08g0390600;Note=Conserved hypothetical protein.;Transcript_evidence=AK289218 (DDBJ%2C Best hit);ORF_evidence=NP_001175556.1 (RefSeq);NIAS_FLcDNA=J100062L18;TENOR=Os08t0390600-01;KEGG=Os08t0390600-01
Chr08	irgsp1_rep	five_prime_UTR	18500158	18500204	.	+	.	Parent=Os08t0390600-01
Chr08	irgsp1_rep	CDS	18500205	18500573	.	+	0	Parent=Os08t0390600-01
Chr08	irgsp1_rep	three_prime_UTR	18500574	18500663	.	+	.	Parent=Os08t0390600-01
Chr08	irgsp1_rep	mRNA	18508782	18509318	.	-	.	ID=Os08t0390700-01;Name=Os08t0390700-01;Locus_id=Os08g0390700;Note=Similar to 2-oxoglutarate-dependent oxygenase.;Transcript_evidence=AK062714 (DDBJ%2C Best hit);ORF_evidence=Q10A95 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=001-106-C06;Expression=AK062714;TENOR=Os08t0390700-01;KEGG=Os08t0390700-01
Chr08	irgsp1_rep	five_prime_UTR	18509317	18509318	.	-	.	Parent=Os08t0390700-01
Chr08	irgsp1_rep	CDS	18509005	18509316	.	-	0	Parent=Os08t0390700-01
Chr08	irgsp1_rep	three_prime_UTR	18508782	18509004	.	-	.	Parent=Os08t0390700-01
Chr08	irgsp1_rep	mRNA	18509099	18510110	.	+	.	ID=Os08t0391000-00;Name=Os08t0391000-00;Locus_id=Os08g0391000;Note=Hypothetical protein.;Transcript_evidence=AK376085 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0391000-00
Chr08	irgsp1_rep	CDS	18509099	18509485	.	+	0	Parent=Os08t0391000-00
Chr08	irgsp1_rep	three_prime_UTR	18509486	18510110	.	+	.	Parent=Os08t0391000-00
Chr08	irgsp1_rep	mRNA	18527571	18530505	.	-	.	ID=Os08t0391300-01;Name=Os08t0391300-01;Locus_id=Os08g0391300;Note=Conserved hypothetical protein.;Transcript_evidence=AK072951 (DDBJ%2C Best hit);ORF_evidence=Q53PA9 (UniProt);NIAS_FLcDNA=J023146G10;Expression=AK072951;TENOR=Os08t0391300-01;KEGG=Os08t0391300-01
Chr08	irgsp1_rep	five_prime_UTR	18530340	18530505	.	-	.	Parent=Os08t0391300-01
Chr08	irgsp1_rep	CDS	18530226	18530339	.	-	0	Parent=Os08t0391300-01
Chr08	irgsp1_rep	three_prime_UTR	18530096	18530225	.	-	.	Parent=Os08t0391300-01
Chr08	irgsp1_rep	three_prime_UTR	18529805	18529995	.	-	.	Parent=Os08t0391300-01
Chr08	irgsp1_rep	three_prime_UTR	18529612	18529721	.	-	.	Parent=Os08t0391300-01
Chr08	irgsp1_rep	three_prime_UTR	18529440	18529533	.	-	.	Parent=Os08t0391300-01
Chr08	irgsp1_rep	three_prime_UTR	18527571	18527891	.	-	.	Parent=Os08t0391300-01
Chr08	irgsp1_rep	mRNA	18542460	18547920	.	-	.	ID=Os08t0391700-00;Name=Os08t0391700-00;Locus_id=Os08g0391700;Note=Similar to Oxidoreductase%2C 2OG-Fe oxygenase family protein%2C expressed.;Transcript_evidence=EU962456 (DDBJ);ORF_evidence=Q10A95 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);TENOR=Os08t0391700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	18547691	18547920	.	-	0	Parent=Os08t0391700-00
Chr08	irgsp1_rep	CDS	18542460	18543477	.	-	1	Parent=Os08t0391700-00
Chr08	irgsp1_rep	mRNA	18542554	18543631	.	+	.	ID=Os08t0391800-00;Name=Os08t0391800-00;Locus_id=Os08g0391800;Note=Hypothetical protein.;Transcript_evidence=AK376085 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0391800-00
Chr08	irgsp1_rep	CDS	18542554	18542943	.	+	0	Parent=Os08t0391800-00
Chr08	irgsp1_rep	three_prime_UTR	18542944	18543631	.	+	.	Parent=Os08t0391800-00
Chr08	irgsp1_rep	mRNA	18568971	18570352	.	-	.	ID=Os08t0392100-00;Name=Os08t0392100-00;Locus_id=Os08g0392100;Note=2OG-Fe(II) oxygenase domain containing protein.;Transcript_evidence=CT837793 (DDBJ%2C Best hit);ORF_evidence=Q10A95 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);TENOR=Os08t0392100-00;KEGG=Os08t0392100-00
Chr08	irgsp1_rep	five_prime_UTR	18570284	18570352	.	-	.	Parent=Os08t0392100-00
Chr08	irgsp1_rep	CDS	18569153	18570283	.	-	0	Parent=Os08t0392100-00
Chr08	irgsp1_rep	three_prime_UTR	18568971	18569152	.	-	.	Parent=Os08t0392100-00
Chr08	irgsp1_rep	mRNA	18581666	18583487	.	-	.	ID=Os08t0392201-00;Name=Os08t0392201-00;Locus_id=Os08g0392201;Note=Non-protein coding transcript.;Transcript_evidence=AK376085 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0392201-00
Chr08	irgsp1_rep	exon	18582959	18583487	.	-	.	Parent=Os08t0392201-00
Chr08	irgsp1_rep	exon	18581666	18581829	.	-	.	Parent=Os08t0392201-00
Chr08	irgsp1_rep	mRNA	18581667	18583904	.	+	.	ID=Os08t0392300-00;Name=Os08t0392300-00;Locus_id=Os08g0392300;Note=Similar to Oxidoreductase%2C 2OG-Fe oxygenase family protein%2C expressed.;Transcript_evidence=BT069633 (DDBJ);ORF_evidence=Q10A95 (UniProt);TENOR=Os08t0392300-00;KEGG=Os08t0392300-00
Chr08	irgsp1_rep	five_prime_UTR	18581667	18581727	.	+	.	Parent=Os08t0392300-00
Chr08	irgsp1_rep	CDS	18581728	18581769	.	+	0	Parent=Os08t0392300-00
Chr08	irgsp1_rep	CDS	18582861	18583904	.	+	0	Parent=Os08t0392300-00
Chr08	irgsp1_rep	mRNA	18591252	18601996	.	+	.	ID=Os08t0392500-00;Name=Os08t0392500-00;Locus_id=Os08g0392500;Note=Hypothetical conserved gene.;Transcript_evidence=AK106564 (DDBJ%2C Secondary hit);ORF_evidence=A2XRJ9 (UniProt);InterPro=Transposase%2C Ptta/En/Spm%2C plant (IPR004252);Expression=AK106564;TENOR=Os08t0392500-00;KEGG=Os08t0392500-00
Chr08	irgsp1_rep	five_prime_UTR	18591252	18591438	.	+	.	Parent=Os08t0392500-00
Chr08	irgsp1_rep	five_prime_UTR	18591527	18591657	.	+	.	Parent=Os08t0392500-00
Chr08	irgsp1_rep	five_prime_UTR	18599630	18599633	.	+	.	Parent=Os08t0392500-00
Chr08	irgsp1_rep	CDS	18599634	18599821	.	+	0	Parent=Os08t0392500-00
Chr08	irgsp1_rep	CDS	18600080	18600272	.	+	1	Parent=Os08t0392500-00
Chr08	irgsp1_rep	CDS	18600351	18600740	.	+	0	Parent=Os08t0392500-00
Chr08	irgsp1_rep	CDS	18600817	18600927	.	+	0	Parent=Os08t0392500-00
Chr08	irgsp1_rep	CDS	18601030	18601284	.	+	0	Parent=Os08t0392500-00
Chr08	irgsp1_rep	three_prime_UTR	18601285	18601350	.	+	.	Parent=Os08t0392500-00
Chr08	irgsp1_rep	three_prime_UTR	18601423	18601479	.	+	.	Parent=Os08t0392500-00
Chr08	irgsp1_rep	three_prime_UTR	18601739	18601996	.	+	.	Parent=Os08t0392500-00
Chr08	irgsp1_rep	mRNA	18616189	18616938	.	-	.	ID=Os08t0392700-01;Name=Os08t0392700-01;Locus_id=Os08g0392700;Note=Conserved hypothetical protein.;Transcript_evidence=AK119997 (DDBJ%2C Best hit);ORF_evidence=B9F8V7 (UniProt);NIAS_FLcDNA=002-184-H03;TENOR=Os08t0392700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	18616938	18616938	.	-	.	Parent=Os08t0392700-01
Chr08	irgsp1_rep	CDS	18616542	18616937	.	-	0	Parent=Os08t0392700-01
Chr08	irgsp1_rep	three_prime_UTR	18616189	18616541	.	-	.	Parent=Os08t0392700-01
Chr08	irgsp1_rep	mRNA	18620062	18621478	.	-	.	ID=Os08t0393150-00;Name=Os08t0393150-00;Locus_id=Os08g0393150;Note=Similar to OSIGBa0110B10.2 protein.;Transcript_evidence=EU973161 (DDBJ);ORF_evidence=Q01KQ6 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677);InterPro=Zinc finger%2C BED-type predicted (IPR003656),Ribonuclease H-like (IPR012337);TENOR=Os08t0393150-00
Chr08	irgsp1_rep	CDS	18620348	18621478	.	-	0	Parent=Os08t0393150-00
Chr08	irgsp1_rep	three_prime_UTR	18620062	18620347	.	-	.	Parent=Os08t0393150-00
Chr08	irgsp1_rep	mRNA	18676001	18678475	.	+	.	ID=Os08t0393600-01;Name=Os08t0393600-01;Locus_id=Os08g0393600;Note=Protein-tyrosine phosphatase-like%2C PTPLA domain containing protein.;Transcript_evidence=AK068190 (DDBJ%2C Best hit);ORF_evidence=Q7XSZ4 (UniProt);InterPro=Protein-tyrosine phosphatase-like%2C PTPLA (IPR007482);NIAS_FLcDNA=J013134O04;Expression=AK068190;TENOR=Os08t0393600-01;KEGG=Os08t0393600-01
Chr08	irgsp1_rep	five_prime_UTR	18676001	18676003	.	+	.	Parent=Os08t0393600-01
Chr08	irgsp1_rep	CDS	18676004	18676167	.	+	0	Parent=Os08t0393600-01
Chr08	irgsp1_rep	CDS	18676305	18676416	.	+	1	Parent=Os08t0393600-01
Chr08	irgsp1_rep	CDS	18676577	18676648	.	+	0	Parent=Os08t0393600-01
Chr08	irgsp1_rep	three_prime_UTR	18676649	18677613	.	+	.	Parent=Os08t0393600-01
Chr08	irgsp1_rep	three_prime_UTR	18677704	18677800	.	+	.	Parent=Os08t0393600-01
Chr08	irgsp1_rep	three_prime_UTR	18678169	18678475	.	+	.	Parent=Os08t0393600-01
Chr08	irgsp1_rep	mRNA	18680131	18681463	.	-	.	ID=Os08t0393700-01;Name=Os08t0393700-01;Locus_id=Os08g0393700;Note=Similar to predicted protein.;Transcript_evidence=AK287513 (DDBJ%2C Best hit);ORF_evidence=Q6ZFH0 (UniProt);InterPro=Domain of unknown function DUF828 (IPR008546);NIAS_FLcDNA=J053030F03;TENOR=Os08t0393700-01;KEGG=Os08t0393700-01
Chr08	irgsp1_rep	five_prime_UTR	18681462	18681463	.	-	.	Parent=Os08t0393700-01
Chr08	irgsp1_rep	CDS	18681082	18681461	.	-	0	Parent=Os08t0393700-01
Chr08	irgsp1_rep	CDS	18680700	18681000	.	-	1	Parent=Os08t0393700-01
Chr08	irgsp1_rep	three_prime_UTR	18680131	18680699	.	-	.	Parent=Os08t0393700-01
Chr08	irgsp1_rep	mRNA	18685904	18686544	.	-	.	ID=Os08t0393900-01;Name=Os08t0393900-01;Locus_id=Os08g0393900;Note=Hypothetical gene.;Transcript_evidence=AK066660 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013072E16;TENOR=Os08t0393900-01
Chr08	irgsp1_rep	five_prime_UTR	18686543	18686544	.	-	.	Parent=Os08t0393900-01
Chr08	irgsp1_rep	CDS	18686189	18686542	.	-	0	Parent=Os08t0393900-01
Chr08	irgsp1_rep	three_prime_UTR	18685904	18686188	.	-	.	Parent=Os08t0393900-01
Chr08	irgsp1_rep	mRNA	18685904	18686486	.	-	.	ID=Os08t0393900-02;Name=Os08t0393900-02;Locus_id=Os08g0393900;Note=Hypothetical protein.;Transcript_evidence=AK099011 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013120H07;TENOR=Os08t0393900-02
Chr08	irgsp1_rep	five_prime_UTR	18686486	18686486	.	-	.	Parent=Os08t0393900-02
Chr08	irgsp1_rep	CDS	18686189	18686485	.	-	0	Parent=Os08t0393900-02
Chr08	irgsp1_rep	three_prime_UTR	18685904	18686188	.	-	.	Parent=Os08t0393900-02
Chr08	irgsp1_rep	mRNA	18691681	18692439	.	+	.	ID=Os08t0394000-01;Name=Os08t0394000-01;Locus_id=Os08g0394000;Note=Conserved hypothetical protein.;Transcript_evidence=AK241708 (DDBJ%2C Best hit);ORF_evidence=Q2R0A7 (UniProt);NIAS_FLcDNA=J065197B03;TENOR=Os08t0394000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	18691681	18692213	.	+	.	Parent=Os08t0394000-01
Chr08	irgsp1_rep	CDS	18692214	18692345	.	+	0	Parent=Os08t0394000-01
Chr08	irgsp1_rep	three_prime_UTR	18692346	18692439	.	+	.	Parent=Os08t0394000-01
Chr08	irgsp1_rep	mRNA	18729685	18730477	.	+	.	ID=Os08t0394700-00;Name=Os08t0394700-00;Locus_id=Os08g0394700;Note=Conserved hypothetical protein.;Transcript_evidence=BT087064 (DDBJ);ORF_evidence=B8B173 (UniProt);TENOR=Os08t0394700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	18729685	18729724	.	+	.	Parent=Os08t0394700-00
Chr08	irgsp1_rep	CDS	18729725	18730477	.	+	0	Parent=Os08t0394700-00
Chr08	irgsp1_rep	mRNA	18758478	18760304	.	+	.	ID=Os08t0395300-01;Name=Os08t0395300-01;Locus_id=Os08g0395300;Note=Similar to AP-4 complex subunit sigma-1.;Transcript_evidence=AK243078 (DDBJ%2C Best hit);ORF_evidence=B4FTQ9 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: protein transport (GO:0015031),Molecular Function: protein transporter activity (GO:0008565);InterPro=Longin-like (IPR011012),Adaptor protein complex%2C sigma subunit (IPR016635),AP complex%2C mu/sigma subunit (IPR022775);NIAS_FLcDNA=J100019M16;TENOR=Os08t0395300-01;KEGG=Os08t0395300-01
Chr08	irgsp1_rep	five_prime_UTR	18758478	18758623	.	+	.	Parent=Os08t0395300-01
Chr08	irgsp1_rep	CDS	18758624	18758764	.	+	0	Parent=Os08t0395300-01
Chr08	irgsp1_rep	CDS	18758980	18759066	.	+	0	Parent=Os08t0395300-01
Chr08	irgsp1_rep	CDS	18759834	18759902	.	+	0	Parent=Os08t0395300-01
Chr08	irgsp1_rep	CDS	18760002	18760136	.	+	0	Parent=Os08t0395300-01
Chr08	irgsp1_rep	three_prime_UTR	18760137	18760304	.	+	.	Parent=Os08t0395300-01
Chr08	irgsp1_rep	mRNA	18763649	18766570	.	-	.	ID=Os08t0395400-01;Name=Os08t0395400-01;Locus_id=Os08g0395400;Note=Conserved hypothetical protein.;Transcript_evidence=AK107111 (DDBJ%2C Best hit);ORF_evidence=B9F016 (UniProt);NIAS_FLcDNA=002-123-A06;TENOR=Os08t0395400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	18765586	18766570	.	-	.	Parent=Os08t0395400-01
Chr08	irgsp1_rep	five_prime_UTR	18765411	18765522	.	-	.	Parent=Os08t0395400-01
Chr08	irgsp1_rep	CDS	18765264	18765410	.	-	0	Parent=Os08t0395400-01
Chr08	irgsp1_rep	three_prime_UTR	18763649	18765263	.	-	.	Parent=Os08t0395400-01
Chr08	irgsp1_rep	mRNA	18765296	18768060	.	+	.	ID=Os08t0395500-01;Name=Os08t0395500-01;Locus_id=Os08g0395500;Note=Conserved hypothetical protein.;Transcript_evidence=AK107023 (DDBJ%2C Best hit);ORF_evidence=B8BAE2 (UniProt);NIAS_FLcDNA=002-121-A03;Expression=AK107023;TENOR=Os08t0395500-01;KEGG=Os08t0395500-01
Chr08	irgsp1_rep	five_prime_UTR	18765296	18765704	.	+	.	Parent=Os08t0395500-01
Chr08	irgsp1_rep	five_prime_UTR	18767106	18767198	.	+	.	Parent=Os08t0395500-01
Chr08	irgsp1_rep	CDS	18767199	18767247	.	+	0	Parent=Os08t0395500-01
Chr08	irgsp1_rep	CDS	18767337	18767500	.	+	2	Parent=Os08t0395500-01
Chr08	irgsp1_rep	CDS	18767586	18767708	.	+	0	Parent=Os08t0395500-01
Chr08	irgsp1_rep	three_prime_UTR	18767709	18768060	.	+	.	Parent=Os08t0395500-01
Chr08	irgsp1_rep	mRNA	18770027	18771421	.	-	.	ID=Os08t0395700-01;Name=Os08t0395700-01;Locus_id=Os08g0395700;Oryzabase Gene Name Synonym(s)=conserved hypothetical protein;Note=Conserved hypothetical protein.;Transcript_evidence=AK069626 (DDBJ%2C Best hit);ORF_evidence=Q6ZKD9 (UniProt);NIAS_FLcDNA=J023024F13;Oryzabase=23064;Expression=AK069626;TENOR=Os08t0395700-01;KEGG=Os08t0395700-01
Chr08	irgsp1_rep	five_prime_UTR	18770651	18771421	.	-	.	Parent=Os08t0395700-01
Chr08	irgsp1_rep	CDS	18770516	18770650	.	-	0	Parent=Os08t0395700-01
Chr08	irgsp1_rep	three_prime_UTR	18770027	18770515	.	-	.	Parent=Os08t0395700-01
Chr08	irgsp1_rep	mRNA	18776803	18778740	.	+	.	ID=Os08t0395800-01;Name=Os08t0395800-01;Locus_id=Os08g0395800;Note=Protein of unknown function DUF247%2C plant family protein.;Transcript_evidence=AK069665 (DDBJ%2C Best hit);ORF_evidence=B9F3Z0 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);NIAS_FLcDNA=J023027H24;Expression=AK069665;TENOR=Os08t0395800-01;KEGG=Os08t0395800-01
Chr08	irgsp1_rep	five_prime_UTR	18776803	18776946	.	+	.	Parent=Os08t0395800-01
Chr08	irgsp1_rep	CDS	18776947	18777031	.	+	0	Parent=Os08t0395800-01
Chr08	irgsp1_rep	CDS	18777169	18778592	.	+	2	Parent=Os08t0395800-01
Chr08	irgsp1_rep	three_prime_UTR	18778593	18778740	.	+	.	Parent=Os08t0395800-01
Chr08	irgsp1_rep	mRNA	18821265	18821963	.	+	.	ID=Os08t0396200-01;Name=Os08t0396200-01;Locus_id=Os08g0396200;Note=Hypothetical gene.;Transcript_evidence=AK121111 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023073H11;Expression=AK121111;TENOR=Os08t0396200-01;KEGG=Os08t0396200-01
Chr08	irgsp1_rep	CDS	18821265	18821489	.	+	0	Parent=Os08t0396200-01
Chr08	irgsp1_rep	three_prime_UTR	18821490	18821963	.	+	.	Parent=Os08t0396200-01
Chr08	irgsp1_rep	mRNA	18837446	18840202	.	-	.	ID=Os08t0396401-01;Name=Os08t0396401-01;Locus_id=Os08g0396401;Note=Non-protein coding transcript.;Transcript_evidence=AK289100 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090096F14;TENOR=Os08t0396401-01
Chr08	irgsp1_rep	exon	18837446	18840202	.	-	.	Parent=Os08t0396401-01
Chr08	irgsp1_rep	mRNA	18849616	18852819	.	-	.	ID=Os08t0396500-01;Name=Os08t0396500-01;Locus_id=Os08g0396500;Note=Hypothetical conserved gene.;Transcript_evidence=AK288130 (DDBJ%2C Best hit);ORF_evidence=Q6ZGE7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: protein-disulfide reductase activity (GO:0047134);InterPro=C1-like (IPR011424);NIAS_FLcDNA=J080097C19;TENOR=Os08t0396500-01;KEGG=Os08t0396500-01
Chr08	irgsp1_rep	CDS	18852188	18852819	.	-	0	Parent=Os08t0396500-01
Chr08	irgsp1_rep	CDS	18850269	18850854	.	-	1	Parent=Os08t0396500-01
Chr08	irgsp1_rep	three_prime_UTR	18849616	18850268	.	-	.	Parent=Os08t0396500-01
Chr08	irgsp1_rep	mRNA	18885944	18892312	.	-	.	ID=Os08t0396700-01;Name=Os08t0396700-01;Locus_id=Os08g0396700;Note=NB-ARC domain containing protein.;Transcript_evidence=AK120280 (DDBJ%2C Best hit);ORF_evidence=Q6ZGE1 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);NIAS_FLcDNA=J013049G19;TENOR=Os08t0396700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	18891486	18892312	.	-	.	Parent=Os08t0396700-01
Chr08	irgsp1_rep	five_prime_UTR	18891048	18891231	.	-	.	Parent=Os08t0396700-01
Chr08	irgsp1_rep	CDS	18889283	18891047	.	-	0	Parent=Os08t0396700-01
Chr08	irgsp1_rep	CDS	18885944	18886395	.	-	2	Parent=Os08t0396700-01
Chr08	irgsp1_rep	mRNA	18889180	18892291	.	-	.	ID=Os08t0396700-02;Name=Os08t0396700-02;Locus_id=Os08g0396700;Note=NB-ARC domain containing protein.;Transcript_evidence=AK099981 (DDBJ%2C Best hit),AK065899 (DDBJ%2C Best hit);ORF_evidence=Q69VK4 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);NIAS_FLcDNA=J013129G15,J013049M19;TENOR=Os08t0396700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	18891486	18892291	.	-	.	Parent=Os08t0396700-02
Chr08	irgsp1_rep	five_prime_UTR	18891048	18891231	.	-	.	Parent=Os08t0396700-02
Chr08	irgsp1_rep	CDS	18889257	18891047	.	-	0	Parent=Os08t0396700-02
Chr08	irgsp1_rep	three_prime_UTR	18889180	18889256	.	-	.	Parent=Os08t0396700-02
Chr08	irgsp1_rep	mRNA	18885356	18892261	.	-	.	ID=Os08t0396700-04;Name=Os08t0396700-04;Locus_id=Os08g0396700;Note=Hypothetical conserved gene.;Transcript_evidence=AK102211 (DDBJ%2C Best hit);ORF_evidence=B9G0R6 (UniProt);NIAS_FLcDNA=J033087I11;Expression=AK102211;TENOR=Os08t0396700-04;KEGG=Os08t0396700-04
Chr08	irgsp1_rep	five_prime_UTR	18892261	18892261	.	-	.	Parent=Os08t0396700-04
Chr08	irgsp1_rep	CDS	18891967	18892260	.	-	0	Parent=Os08t0396700-04
Chr08	irgsp1_rep	three_prime_UTR	18891486	18891966	.	-	.	Parent=Os08t0396700-04
Chr08	irgsp1_rep	three_prime_UTR	18889283	18891231	.	-	.	Parent=Os08t0396700-04
Chr08	irgsp1_rep	three_prime_UTR	18885753	18886395	.	-	.	Parent=Os08t0396700-04
Chr08	irgsp1_rep	three_prime_UTR	18885356	18885659	.	-	.	Parent=Os08t0396700-04
Chr08	irgsp1_rep	mRNA	18876520	18890079	.	-	.	ID=Os08t0396700-05;Name=Os08t0396700-05;Locus_id=Os08g0396700;Note=DC1 domain containing protein.;Transcript_evidence=AK106592 (DDBJ%2C Best hit);ORF_evidence=Q6ZGE1 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C ZZ-type (IPR000433);NIAS_FLcDNA=002-111-G09;Expression=AK106592;TENOR=Os08t0396700-05;KEGG=Os08t0396700-05
Chr08	irgsp1_rep	five_prime_UTR	18890079	18890079	.	-	.	Parent=Os08t0396700-05
Chr08	irgsp1_rep	CDS	18889283	18890078	.	-	0	Parent=Os08t0396700-05
Chr08	irgsp1_rep	CDS	18885753	18886395	.	-	2	Parent=Os08t0396700-05
Chr08	irgsp1_rep	CDS	18885631	18885652	.	-	1	Parent=Os08t0396700-05
Chr08	irgsp1_rep	three_prime_UTR	18885531	18885630	.	-	.	Parent=Os08t0396700-05
Chr08	irgsp1_rep	three_prime_UTR	18878456	18878496	.	-	.	Parent=Os08t0396700-05
Chr08	irgsp1_rep	three_prime_UTR	18876520	18877482	.	-	.	Parent=Os08t0396700-05
Chr08	irgsp1_rep	mRNA	18889328	18891233	.	+	.	ID=Os08t0397250-00;Name=Os08t0397250-00;Locus_id=Os08g0397250;Note=Hypothetical protein.;Transcript_evidence=tplb0021d08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0397250-00
Chr08	irgsp1_rep	five_prime_UTR	18889328	18889341	.	+	.	Parent=Os08t0397250-00
Chr08	irgsp1_rep	CDS	18889342	18889989	.	+	0	Parent=Os08t0397250-00
Chr08	irgsp1_rep	three_prime_UTR	18889990	18891233	.	+	.	Parent=Os08t0397250-00
Chr08	irgsp1_rep	mRNA	18950431	18951201	.	-	.	ID=Os08t0397800-01;Name=Os08t0397800-01;Locus_id=Os08g0397800;Note=Conserved hypothetical protein.;Transcript_evidence=AK108174 (DDBJ%2C Best hit);ORF_evidence=A2YUY7 (UniProt);NIAS_FLcDNA=002-140-A04;TENOR=Os08t0397800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	18950738	18951201	.	-	.	Parent=Os08t0397800-01
Chr08	irgsp1_rep	CDS	18950431	18950737	.	-	0	Parent=Os08t0397800-01
Chr08	irgsp1_rep	mRNA	18956803	18961096	.	+	.	ID=Os08t0397900-01;Name=Os08t0397900-01;Locus_id=Os08g0397900;Note=Uncharacterised conserved protein UCP009193 domain containing protein.;Transcript_evidence=AK109817 (DDBJ%2C Best hit);ORF_evidence=B6UF67 (UniProt);InterPro=Uncharacterised conserved protein UCP009193 (IPR016549);NIAS_FLcDNA=002-148-A02;Expression=AK109817;TENOR=Os08t0397900-01;KEGG=Os08t0397900-01
Chr08	irgsp1_rep	five_prime_UTR	18956803	18956982	.	+	.	Parent=Os08t0397900-01
Chr08	irgsp1_rep	CDS	18956983	18957150	.	+	0	Parent=Os08t0397900-01
Chr08	irgsp1_rep	CDS	18958724	18958804	.	+	0	Parent=Os08t0397900-01
Chr08	irgsp1_rep	CDS	18959003	18959330	.	+	0	Parent=Os08t0397900-01
Chr08	irgsp1_rep	CDS	18960496	18960551	.	+	2	Parent=Os08t0397900-01
Chr08	irgsp1_rep	three_prime_UTR	18960552	18961096	.	+	.	Parent=Os08t0397900-01
Chr08	irgsp1_rep	mRNA	18956888	18959667	.	+	.	ID=Os08t0397900-02;Name=Os08t0397900-02;Locus_id=Os08g0397900;Note=Similar to Holocarboxylase synthetase.;Transcript_evidence=AK060114 (DDBJ%2C Best hit);ORF_evidence=B6UF67 (UniProt);InterPro=Uncharacterised conserved protein UCP009193 (IPR016549);NIAS_FLcDNA=006-308-D12;Expression=AK060114;TENOR=Os08t0397900-02;KEGG=Os08t0397900-02
Chr08	irgsp1_rep	five_prime_UTR	18956888	18956982	.	+	.	Parent=Os08t0397900-02
Chr08	irgsp1_rep	CDS	18956983	18957150	.	+	0	Parent=Os08t0397900-02
Chr08	irgsp1_rep	CDS	18958724	18958804	.	+	0	Parent=Os08t0397900-02
Chr08	irgsp1_rep	CDS	18959003	18959344	.	+	0	Parent=Os08t0397900-02
Chr08	irgsp1_rep	three_prime_UTR	18959345	18959667	.	+	.	Parent=Os08t0397900-02
Chr08	irgsp1_rep	mRNA	18956910	18959592	.	+	.	ID=Os08t0397900-03;Name=Os08t0397900-03;Locus_id=Os08g0397900;Note=Similar to Holocarboxylase synthetase.;Transcript_evidence=AK098973 (DDBJ%2C Best hit);ORF_evidence=B6UF67 (UniProt);InterPro=Uncharacterised conserved protein UCP009193 (IPR016549);NIAS_FLcDNA=J013089E18;Expression=AK098973;TENOR=Os08t0397900-03;KEGG=Os08t0397900-03
Chr08	irgsp1_rep	five_prime_UTR	18956910	18956982	.	+	.	Parent=Os08t0397900-03
Chr08	irgsp1_rep	CDS	18956983	18957150	.	+	0	Parent=Os08t0397900-03
Chr08	irgsp1_rep	CDS	18958724	18958804	.	+	0	Parent=Os08t0397900-03
Chr08	irgsp1_rep	CDS	18959003	18959344	.	+	0	Parent=Os08t0397900-03
Chr08	irgsp1_rep	three_prime_UTR	18959345	18959592	.	+	.	Parent=Os08t0397900-03
Chr08	irgsp1_rep	mRNA	18960126	18966328	.	-	.	ID=Os08t0398000-01;Name=Os08t0398000-01;Locus_id=Os08g0398000;CGSNL Gene Symbol=ABCA3;CGSNL Gene Name=ABC TRANSPORTER A FAMILY MEMBER 3;Oryzabase Gene Symbol Synonym(s)=OsABCA3;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCA subgroup member 3;Note=ABC transporter-like domain containing protein.;Transcript_evidence=AK101910 (DDBJ%2C Best hit);ORF_evidence=NP_190357.2 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=J033071F13;Oryzabase=11948;Expression=AK101910;TENOR=Os08t0398000-01;KEGG=Os08t0398000-01
Chr08	irgsp1_rep	five_prime_UTR	18966271	18966328	.	-	.	Parent=Os08t0398000-01
Chr08	irgsp1_rep	CDS	18965893	18966270	.	-	0	Parent=Os08t0398000-01
Chr08	irgsp1_rep	CDS	18964285	18964516	.	-	0	Parent=Os08t0398000-01
Chr08	irgsp1_rep	CDS	18963882	18964051	.	-	2	Parent=Os08t0398000-01
Chr08	irgsp1_rep	CDS	18963621	18963806	.	-	0	Parent=Os08t0398000-01
Chr08	irgsp1_rep	CDS	18963355	18963450	.	-	0	Parent=Os08t0398000-01
Chr08	irgsp1_rep	CDS	18963066	18963266	.	-	0	Parent=Os08t0398000-01
Chr08	irgsp1_rep	CDS	18962822	18962981	.	-	0	Parent=Os08t0398000-01
Chr08	irgsp1_rep	CDS	18962505	18962731	.	-	2	Parent=Os08t0398000-01
Chr08	irgsp1_rep	CDS	18962306	18962423	.	-	0	Parent=Os08t0398000-01
Chr08	irgsp1_rep	CDS	18962148	18962224	.	-	2	Parent=Os08t0398000-01
Chr08	irgsp1_rep	CDS	18961974	18962063	.	-	0	Parent=Os08t0398000-01
Chr08	irgsp1_rep	CDS	18961734	18961877	.	-	0	Parent=Os08t0398000-01
Chr08	irgsp1_rep	CDS	18961337	18961651	.	-	0	Parent=Os08t0398000-01
Chr08	irgsp1_rep	CDS	18961170	18961250	.	-	0	Parent=Os08t0398000-01
Chr08	irgsp1_rep	CDS	18960909	18961085	.	-	0	Parent=Os08t0398000-01
Chr08	irgsp1_rep	CDS	18960449	18960703	.	-	0	Parent=Os08t0398000-01
Chr08	irgsp1_rep	three_prime_UTR	18960126	18960448	.	-	.	Parent=Os08t0398000-01
Chr08	irgsp1_rep	mRNA	18993292	18998956	.	+	.	ID=Os08t0398300-01;Name=Os08t0398300-01;Locus_id=Os08g0398300;CGSNL Gene Symbol=ABCA4;CGSNL Gene Name=ABC TRANSPORTER A FAMILY MEMBER 4;Oryzabase Gene Symbol Synonym(s)=OsABCA4;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCA subgroup member 4;Note=ABC transporter-like domain containing protein.;Transcript_evidence=AK122145 (DDBJ%2C Best hit);ORF_evidence=XP_002318606.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=J033137O18;Oryzabase=11949;Expression=AK122145;TENOR=Os08t0398300-01;KEGG=Os08t0398300-01
Chr08	irgsp1_rep	five_prime_UTR	18993292	18993324	.	+	.	Parent=Os08t0398300-01
Chr08	irgsp1_rep	CDS	18993325	18993417	.	+	0	Parent=Os08t0398300-01
Chr08	irgsp1_rep	CDS	18993525	18993909	.	+	0	Parent=Os08t0398300-01
Chr08	irgsp1_rep	CDS	18994020	18994102	.	+	2	Parent=Os08t0398300-01
Chr08	irgsp1_rep	CDS	18994207	18994351	.	+	0	Parent=Os08t0398300-01
Chr08	irgsp1_rep	CDS	18995064	18995192	.	+	2	Parent=Os08t0398300-01
Chr08	irgsp1_rep	CDS	18995288	18995412	.	+	2	Parent=Os08t0398300-01
Chr08	irgsp1_rep	CDS	18995502	18995660	.	+	0	Parent=Os08t0398300-01
Chr08	irgsp1_rep	CDS	18995744	18995906	.	+	0	Parent=Os08t0398300-01
Chr08	irgsp1_rep	CDS	18995991	18996116	.	+	2	Parent=Os08t0398300-01
Chr08	irgsp1_rep	CDS	18996189	18996272	.	+	2	Parent=Os08t0398300-01
Chr08	irgsp1_rep	CDS	18996351	18996712	.	+	2	Parent=Os08t0398300-01
Chr08	irgsp1_rep	CDS	18996813	18997013	.	+	0	Parent=Os08t0398300-01
Chr08	irgsp1_rep	CDS	18997114	18997223	.	+	0	Parent=Os08t0398300-01
Chr08	irgsp1_rep	CDS	18997320	18997404	.	+	1	Parent=Os08t0398300-01
Chr08	irgsp1_rep	CDS	18997539	18997667	.	+	0	Parent=Os08t0398300-01
Chr08	irgsp1_rep	CDS	18997746	18997851	.	+	0	Parent=Os08t0398300-01
Chr08	irgsp1_rep	CDS	18997929	18998017	.	+	2	Parent=Os08t0398300-01
Chr08	irgsp1_rep	CDS	18998126	18998425	.	+	0	Parent=Os08t0398300-01
Chr08	irgsp1_rep	three_prime_UTR	18998426	18998956	.	+	.	Parent=Os08t0398300-01
Chr08	irgsp1_rep	mRNA	19002463	19007607	.	+	.	ID=Os08t0398350-00;Name=Os08t0398350-00;Locus_id=Os08g0398350;CGSNL Gene Symbol=ABCA5;CGSNL Gene Name=ABC TRANSPORTER A FAMILY MEMBER 5;Oryzabase Gene Symbol Synonym(s)=OsABCA5;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCA subgroup member 5;Note=Similar to ABC transporter family%2C cholesterol/phospholipid flippase.;Transcript_evidence=ab initio prediction;ORF_evidence=XP_002318606.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C conserved site (IPR017871);Oryzabase=11950;TENOR=Os08t0398350-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	19002463	19002547	.	+	0	Parent=Os08t0398350-00
Chr08	irgsp1_rep	CDS	19002886	19002989	.	+	2	Parent=Os08t0398350-00
Chr08	irgsp1_rep	CDS	19003104	19003245	.	+	0	Parent=Os08t0398350-00
Chr08	irgsp1_rep	CDS	19003359	19003478	.	+	2	Parent=Os08t0398350-00
Chr08	irgsp1_rep	CDS	19003582	19003706	.	+	2	Parent=Os08t0398350-00
Chr08	irgsp1_rep	CDS	19004144	19004302	.	+	0	Parent=Os08t0398350-00
Chr08	irgsp1_rep	CDS	19004402	19004564	.	+	0	Parent=Os08t0398350-00
Chr08	irgsp1_rep	CDS	19004661	19004786	.	+	2	Parent=Os08t0398350-00
Chr08	irgsp1_rep	CDS	19004827	19004952	.	+	2	Parent=Os08t0398350-00
Chr08	irgsp1_rep	CDS	19005062	19005414	.	+	2	Parent=Os08t0398350-00
Chr08	irgsp1_rep	CDS	19005704	19005904	.	+	0	Parent=Os08t0398350-00
Chr08	irgsp1_rep	CDS	19006103	19006212	.	+	0	Parent=Os08t0398350-00
Chr08	irgsp1_rep	CDS	19006313	19006397	.	+	1	Parent=Os08t0398350-00
Chr08	irgsp1_rep	CDS	19006606	19006734	.	+	0	Parent=Os08t0398350-00
Chr08	irgsp1_rep	CDS	19006837	19006942	.	+	0	Parent=Os08t0398350-00
Chr08	irgsp1_rep	CDS	19007066	19007154	.	+	2	Parent=Os08t0398350-00
Chr08	irgsp1_rep	CDS	19007305	19007607	.	+	0	Parent=Os08t0398350-00
Chr08	irgsp1_rep	mRNA	19011905	19015935	.	+	.	ID=Os08t0398400-01;Name=Os08t0398400-01;Locus_id=Os08g0398400;RAP-DB Gene Symbol Synonym(s)=OsHIR1%2C OsHSI1;RAP-DB Gene Name Synonym(s)=hypersensitive-induced reaction protein 1;Oryzabase Gene Symbol Synonym(s)=OsHIR1%2C OsHSI1;Oryzabase Gene Name Synonym(s)=hypersensitive-induced reaction protein 1;Note=Hypersensitive induced reaction protein%2C Bacterial pathogen resistance;Transcript_evidence=AK065554,NM_001068279;ORF_evidence=Q6ZIV7;GO=Cellular Component: membrane (GO:0016020);InterPro=Band 7 protein (IPR001107),Stomatin family (IPR001972),Hypersensitive-induced response protein (IPR028512);NIAS_FLcDNA=J013027I07;Manual Curation=August 22%2C 2014;Literature_PMID=21192820;Oryzabase=11528;TENOR=Os08t0398400-01;KEGG=Os08t0398400-01
Chr08	irgsp1_rep	five_prime_UTR	19011905	19012034	.	+	.	Parent=Os08t0398400-01
Chr08	irgsp1_rep	five_prime_UTR	19013729	19013735	.	+	.	Parent=Os08t0398400-01
Chr08	irgsp1_rep	CDS	19013736	19013924	.	+	0	Parent=Os08t0398400-01
Chr08	irgsp1_rep	CDS	19014195	19014315	.	+	0	Parent=Os08t0398400-01
Chr08	irgsp1_rep	CDS	19014439	19014530	.	+	2	Parent=Os08t0398400-01
Chr08	irgsp1_rep	CDS	19014603	19014699	.	+	0	Parent=Os08t0398400-01
Chr08	irgsp1_rep	CDS	19015252	19015607	.	+	2	Parent=Os08t0398400-01
Chr08	irgsp1_rep	three_prime_UTR	19015608	19015935	.	+	.	Parent=Os08t0398400-01
Chr08	irgsp1_rep	mRNA	19015236	19015608	.	-	.	ID=Os08t0398450-00;Name=Os08t0398450-00;Locus_id=Os08g0398450;Note=Conserved hypothetical protein.;Transcript_evidence=BT036075 (DDBJ);ORF_evidence=B4FG37 (UniProt);TENOR=Os08t0398450-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	19015506	19015608	.	-	.	Parent=Os08t0398450-00
Chr08	irgsp1_rep	CDS	19015236	19015505	.	-	0	Parent=Os08t0398450-00
Chr08	irgsp1_rep	mRNA	19017249	19018458	.	-	.	ID=Os08t0398500-01;Name=Os08t0398500-01;Locus_id=Os08g0398500;Note=Similar to KED-like protein.;Transcript_evidence=AK072742 (DDBJ%2C Best hit);ORF_evidence=B9G0S2 (UniProt);NIAS_FLcDNA=J023139O15;Expression=AK072742;TENOR=Os08t0398500-01;KEGG=Os08t0398500-01
Chr08	irgsp1_rep	five_prime_UTR	19018396	19018458	.	-	.	Parent=Os08t0398500-01
Chr08	irgsp1_rep	CDS	19018200	19018253	.	-	0	Parent=Os08t0398500-01
Chr08	irgsp1_rep	CDS	19017586	19017897	.	-	0	Parent=Os08t0398500-01
Chr08	irgsp1_rep	three_prime_UTR	19017249	19017585	.	-	.	Parent=Os08t0398500-01
Chr08	irgsp1_rep	mRNA	19021817	19031571	.	+	.	ID=Os08t0398700-01;Name=Os08t0398700-01;Locus_id=Os08g0398700;Note=Peptidase M1%2C membrane alanine aminopeptidase family protein.;Transcript_evidence=AK120068 (DDBJ%2C Best hit);ORF_evidence=NP_195035.2 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: metallopeptidase activity (GO:0008237),Molecular Function: zinc ion binding (GO:0008270);InterPro=Peptidase M1%2C alanine aminopeptidase/leukotriene A4 hydrolase (IPR001930),Peptidase M1%2C membrane alanine aminopeptidase%2C N-terminal (IPR014782);NIAS_FLcDNA=J013002N11;Expression=AK120068;TENOR=Os08t0398700-01;KEGG=Os08t0398700-01
Chr08	irgsp1_rep	five_prime_UTR	19021817	19021914	.	+	.	Parent=Os08t0398700-01
Chr08	irgsp1_rep	CDS	19021915	19022122	.	+	0	Parent=Os08t0398700-01
Chr08	irgsp1_rep	CDS	19022226	19022373	.	+	2	Parent=Os08t0398700-01
Chr08	irgsp1_rep	CDS	19023983	19024085	.	+	1	Parent=Os08t0398700-01
Chr08	irgsp1_rep	CDS	19024305	19024491	.	+	0	Parent=Os08t0398700-01
Chr08	irgsp1_rep	CDS	19024609	19024702	.	+	2	Parent=Os08t0398700-01
Chr08	irgsp1_rep	CDS	19024811	19024964	.	+	1	Parent=Os08t0398700-01
Chr08	irgsp1_rep	CDS	19025120	19025224	.	+	0	Parent=Os08t0398700-01
Chr08	irgsp1_rep	CDS	19025317	19025433	.	+	0	Parent=Os08t0398700-01
Chr08	irgsp1_rep	CDS	19026337	19026450	.	+	0	Parent=Os08t0398700-01
Chr08	irgsp1_rep	CDS	19027211	19027393	.	+	0	Parent=Os08t0398700-01
Chr08	irgsp1_rep	CDS	19028189	19028480	.	+	0	Parent=Os08t0398700-01
Chr08	irgsp1_rep	CDS	19028567	19028688	.	+	2	Parent=Os08t0398700-01
Chr08	irgsp1_rep	CDS	19028800	19028897	.	+	0	Parent=Os08t0398700-01
Chr08	irgsp1_rep	CDS	19029116	19029293	.	+	1	Parent=Os08t0398700-01
Chr08	irgsp1_rep	CDS	19029371	19029485	.	+	0	Parent=Os08t0398700-01
Chr08	irgsp1_rep	CDS	19029572	19029639	.	+	2	Parent=Os08t0398700-01
Chr08	irgsp1_rep	CDS	19029767	19029844	.	+	0	Parent=Os08t0398700-01
Chr08	irgsp1_rep	CDS	19030978	19031055	.	+	0	Parent=Os08t0398700-01
Chr08	irgsp1_rep	CDS	19031138	19031323	.	+	0	Parent=Os08t0398700-01
Chr08	irgsp1_rep	three_prime_UTR	19031324	19031571	.	+	.	Parent=Os08t0398700-01
Chr08	irgsp1_rep	mRNA	19031197	19031552	.	+	.	ID=Os08t0398700-02;Name=Os08t0398700-02;Locus_id=Os08g0398700;Note=Similar to APM1 (AMINOPEPTIDASE M1).;Transcript_evidence=AK105074 (DDBJ%2C Best hit);ORF_evidence=NP_195035.2 (RefSeq);NIAS_FLcDNA=001-045-E10;Expression=AK105074;TENOR=Os08t0398700-02;KEGG=Os08t0398700-02
Chr08	irgsp1_rep	five_prime_UTR	19031197	19031197	.	+	.	Parent=Os08t0398700-02
Chr08	irgsp1_rep	CDS	19031198	19031323	.	+	0	Parent=Os08t0398700-02
Chr08	irgsp1_rep	three_prime_UTR	19031324	19031552	.	+	.	Parent=Os08t0398700-02
Chr08	irgsp1_rep	mRNA	19031551	19033254	.	-	.	ID=Os08t0398800-02;Name=Os08t0398800-02;Locus_id=Os08g0398800;Note=Cleavage and polyadenylation specificity factor%2C 25 kDa subunit domain containing protein.;Transcript_evidence=AK061260 (DDBJ%2C Best hit),AK099189 (DDBJ%2C Best hit);ORF_evidence=NP_001147338.1 (RefSeq);NIAS_FLcDNA=006-212-B12,J023110C11;Expression=AK061260;TENOR=Os08t0398800-02;KEGG=Os08t0398800-02
Chr08	irgsp1_rep	five_prime_UTR	19033109	19033254	.	-	.	Parent=Os08t0398800-02
Chr08	irgsp1_rep	CDS	19032930	19033108	.	-	0	Parent=Os08t0398800-02
Chr08	irgsp1_rep	CDS	19032697	19032836	.	-	1	Parent=Os08t0398800-02
Chr08	irgsp1_rep	CDS	19032395	19032486	.	-	2	Parent=Os08t0398800-02
Chr08	irgsp1_rep	CDS	19032208	19032294	.	-	0	Parent=Os08t0398800-02
Chr08	irgsp1_rep	CDS	19031986	19032096	.	-	0	Parent=Os08t0398800-02
Chr08	irgsp1_rep	CDS	19031825	19031896	.	-	0	Parent=Os08t0398800-02
Chr08	irgsp1_rep	three_prime_UTR	19031551	19031824	.	-	.	Parent=Os08t0398800-02
Chr08	irgsp1_rep	mRNA	19033700	19034584	.	+	.	ID=Os08t0399050-00;Name=Os08t0399050-00;Locus_id=Os08g0399050;Note=Similar to OSIGBa0096F13.8 protein.;Transcript_evidence=EU977111 (DDBJ);ORF_evidence=Q01M02 (UniProt);TENOR=Os08t0399050-00
Chr08	irgsp1_rep	CDS	19033700	19034584	.	+	0	Parent=Os08t0399050-00
Chr08	irgsp1_rep	mRNA	19043858	19046476	.	+	.	ID=Os08t0399300-00;Name=Os08t0399300-00;Locus_id=Os08g0399300;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G0S4 (UniProt);GO=Molecular Function: histone binding (GO:0042393);InterPro=SRA-YDG (IPR003105);TENOR=Os08t0399300-00;KEGG=Os08t0399300-00 (EC:6.3.2.19)
Chr08	irgsp1_rep	CDS	19043858	19046476	.	+	0	Parent=Os08t0399300-00
Chr08	irgsp1_rep	mRNA	19059686	19065902	.	-	.	ID=Os08t0399600-01;Name=Os08t0399600-01;Locus_id=Os08g0399600;Note=Translation elongation factor EFTs/EF1B domain containing protein.;Transcript_evidence=AK071873 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: translational elongation (GO:0006414),Cellular Component: intracellular (GO:0005622),Molecular Function: translation elongation factor activity (GO:0003746),Molecular Function: protein binding (GO:0005515);InterPro=Translation elongation factor EFTs/EF1B (IPR001816),UBA-like (IPR009060),Translation elongation factor EFTs/EF1B%2C dimerisation (IPR014039),Translation elongation factor Ts%2C conserved site (IPR018101);NIAS_FLcDNA=J023123H16;TENOR=Os08t0399600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	19065690	19065902	.	-	0	Parent=Os08t0399600-01
Chr08	irgsp1_rep	CDS	19065088	19065364	.	-	0	Parent=Os08t0399600-01
Chr08	irgsp1_rep	CDS	19064822	19064994	.	-	2	Parent=Os08t0399600-01
Chr08	irgsp1_rep	CDS	19064352	19064432	.	-	0	Parent=Os08t0399600-01
Chr08	irgsp1_rep	CDS	19061885	19062059	.	-	0	Parent=Os08t0399600-01
Chr08	irgsp1_rep	CDS	19061161	19061345	.	-	2	Parent=Os08t0399600-01
Chr08	irgsp1_rep	CDS	19060479	19060604	.	-	0	Parent=Os08t0399600-01
Chr08	irgsp1_rep	CDS	19060285	19060374	.	-	0	Parent=Os08t0399600-01
Chr08	irgsp1_rep	CDS	19059953	19059958	.	-	0	Parent=Os08t0399600-01
Chr08	irgsp1_rep	three_prime_UTR	19059686	19059952	.	-	.	Parent=Os08t0399600-01
Chr08	irgsp1_rep	mRNA	19063512	19064456	.	-	.	ID=Os08t0399600-02;Name=Os08t0399600-02;Locus_id=Os08g0399600;Note=Non-protein coding transcript.;Transcript_evidence=AK107916 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-134-G11;TENOR=Os08t0399600-02
Chr08	irgsp1_rep	exon	19063512	19064456	.	-	.	Parent=Os08t0399600-02
Chr08	irgsp1_rep	mRNA	19059686	19061187	.	-	.	ID=Os08t0399600-03;Name=Os08t0399600-03;Locus_id=Os08g0399600;Note=Similar to Elongation factor Ts.;Transcript_evidence=AK058957 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: translational elongation (GO:0006414),Cellular Component: intracellular (GO:0005622),Molecular Function: translation elongation factor activity (GO:0003746);InterPro=Translation elongation factor EFTs/EF1B (IPR001816),Translation elongation factor EFTs/EF1B%2C dimerisation (IPR014039);NIAS_FLcDNA=001-020-B05;Expression=AK058957;TENOR=Os08t0399600-03;KEGG=Os08t0399600-03
Chr08	irgsp1_rep	CDS	19061161	19061187	.	-	0	Parent=Os08t0399600-03
Chr08	irgsp1_rep	CDS	19060479	19060604	.	-	0	Parent=Os08t0399600-03
Chr08	irgsp1_rep	CDS	19060285	19060374	.	-	0	Parent=Os08t0399600-03
Chr08	irgsp1_rep	CDS	19059953	19059958	.	-	0	Parent=Os08t0399600-03
Chr08	irgsp1_rep	three_prime_UTR	19059686	19059952	.	-	.	Parent=Os08t0399600-03
Chr08	irgsp1_rep	mRNA	19070540	19072038	.	-	.	ID=Os08t0399900-01;Name=Os08t0399900-01;Locus_id=Os08g0399900;Note=Hypothetical protein.;Transcript_evidence=AK110830 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-172-A02;Expression=AK110830;TENOR=Os08t0399900-01;KEGG=Os08t0399900-01
Chr08	irgsp1_rep	five_prime_UTR	19071596	19072038	.	-	.	Parent=Os08t0399900-01
Chr08	irgsp1_rep	CDS	19070918	19071595	.	-	0	Parent=Os08t0399900-01
Chr08	irgsp1_rep	three_prime_UTR	19070540	19070917	.	-	.	Parent=Os08t0399900-01
Chr08	irgsp1_rep	mRNA	19071029	19076378	.	+	.	ID=Os08t0400000-01;Name=Os08t0400000-01;Locus_id=Os08g0400000;Note=Similar to Puromycin-sensitive aminopeptidase (EC 3.4.11.-) (PSA).;Transcript_evidence=AK069520 (DDBJ%2C Best hit);ORF_evidence=B8BAJ0 (UniProt);GO=Molecular Function: histone binding (GO:0042393);InterPro=SRA-YDG (IPR003105);NIAS_FLcDNA=J023022E24;Expression=AK069520;TENOR=Os08t0400000-01;KEGG=Os08t0400000-01 (EC:6.3.2.19)
Chr08	irgsp1_rep	five_prime_UTR	19071029	19071103	.	+	.	Parent=Os08t0400000-01
Chr08	irgsp1_rep	five_prime_UTR	19071249	19071265	.	+	.	Parent=Os08t0400000-01
Chr08	irgsp1_rep	CDS	19071266	19074049	.	+	0	Parent=Os08t0400000-01
Chr08	irgsp1_rep	three_prime_UTR	19074050	19074681	.	+	.	Parent=Os08t0400000-01
Chr08	irgsp1_rep	three_prime_UTR	19075771	19075907	.	+	.	Parent=Os08t0400000-01
Chr08	irgsp1_rep	three_prime_UTR	19076008	19076378	.	+	.	Parent=Os08t0400000-01
Chr08	irgsp1_rep	mRNA	19085976	19089497	.	+	.	ID=Os08t0400200-00;Name=Os08t0400200-00;Locus_id=Os08g0400200;Oryzabase Gene Symbol Synonym(s)=OsSET30%2C SDG710%2C OsSUVH10%2C DLN209%2C OsDLN209;Oryzabase Gene Name Synonym(s)=SET protein 30%2C SUVH Histone Methyltransferase 10%2C DLN repressor 209%2C DLN motif protein 209;Note=Similar to SET domain protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6Z2A2 (UniProt);GO=Biological Process: histone lysine methylation (GO:0034968),Cellular Component: nucleus (GO:0005634),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: histone-lysine N-methyltransferase activity (GO:0018024),Molecular Function: histone binding (GO:0042393);InterPro=SET domain (IPR001214),SRA-YDG (IPR003105),Post-SET domain (IPR003616),Pre-SET domain (IPR007728);Oryzabase=13394;TENOR=Os08t0400200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	19085976	19089497	.	+	0	Parent=Os08t0400200-00
Chr08	irgsp1_rep	mRNA	19094906	19098835	.	+	.	ID=Os08t0400300-01;Name=Os08t0400300-01;Locus_id=Os08g0400300;Note=Conserved hypothetical protein.;Transcript_evidence=AK067617 (DDBJ%2C Best hit);ORF_evidence=A2YV04 (UniProt);NIAS_FLcDNA=J013109M02;Expression=AK067617;TENOR=Os08t0400300-01;KEGG=Os08t0400300-01
Chr08	irgsp1_rep	five_prime_UTR	19094906	19095119	.	+	.	Parent=Os08t0400300-01
Chr08	irgsp1_rep	five_prime_UTR	19096308	19096334	.	+	.	Parent=Os08t0400300-01
Chr08	irgsp1_rep	CDS	19096335	19097290	.	+	0	Parent=Os08t0400300-01
Chr08	irgsp1_rep	CDS	19097914	19098403	.	+	1	Parent=Os08t0400300-01
Chr08	irgsp1_rep	three_prime_UTR	19098404	19098835	.	+	.	Parent=Os08t0400300-01
Chr08	irgsp1_rep	mRNA	19124597	19127727	.	+	.	ID=Os08t0400800-00;Name=Os08t0400800-00;Locus_id=Os08g0400800;Note=Similar to F-box domain containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XGT5 (UniProt);TENOR=Os08t0400800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	19124597	19124704	.	+	0	Parent=Os08t0400800-00
Chr08	irgsp1_rep	CDS	19124970	19125066	.	+	0	Parent=Os08t0400800-00
Chr08	irgsp1_rep	CDS	19125661	19125731	.	+	2	Parent=Os08t0400800-00
Chr08	irgsp1_rep	CDS	19125926	19126029	.	+	0	Parent=Os08t0400800-00
Chr08	irgsp1_rep	CDS	19127655	19127727	.	+	1	Parent=Os08t0400800-00
Chr08	irgsp1_rep	mRNA	19139675	19142676	.	+	.	ID=Os08t0401100-01;Name=Os08t0401100-01;Locus_id=Os08g0401100;Note=Ankyrin repeat containing protein.;Transcript_evidence=AK121508 (DDBJ%2C Best hit);ORF_evidence=Q6Z294 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J033023C05;Expression=AK121508;TENOR=Os08t0401100-01;KEGG=Os08t0401100-01
Chr08	irgsp1_rep	five_prime_UTR	19139675	19139732	.	+	.	Parent=Os08t0401100-01
Chr08	irgsp1_rep	CDS	19139733	19140471	.	+	0	Parent=Os08t0401100-01
Chr08	irgsp1_rep	CDS	19141068	19141699	.	+	2	Parent=Os08t0401100-01
Chr08	irgsp1_rep	CDS	19141804	19142505	.	+	0	Parent=Os08t0401100-01
Chr08	irgsp1_rep	three_prime_UTR	19142506	19142676	.	+	.	Parent=Os08t0401100-01
Chr08	irgsp1_rep	mRNA	19142778	19143445	.	-	.	ID=Os08t0401200-00;Name=Os08t0401200-00;Locus_id=Os08g0401200;Note=Non-protein coding transcript.;Transcript_evidence=BT069163 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0401200-00
Chr08	irgsp1_rep	exon	19143373	19143445	.	-	.	Parent=Os08t0401200-00
Chr08	irgsp1_rep	exon	19142778	19142924	.	-	.	Parent=Os08t0401200-00
Chr08	irgsp1_rep	mRNA	19157206	19161819	.	-	.	ID=Os08t0401500-01;Name=Os08t0401500-01;Locus_id=Os08g0401500;Oryzabase Gene Name Synonym(s)=HTH1-related protein;Note=Similar to HOTHEAD protein precursor (ADHESION OF CALYX EDGES protein).;Transcript_evidence=AK068301 (DDBJ%2C Best hit);ORF_evidence=NP_001147913.1 (RefSeq);GO=Biological Process: alcohol metabolic process (GO:0006066),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: choline dehydrogenase activity (GO:0008812),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Glucose-methanol-choline oxidoreductase%2C N-terminal (IPR000172),Glucose-methanol-choline oxidoreductase%2C C-terminal (IPR007867),Glucose-methanol-choline oxidoreductase (IPR012132);NIAS_FLcDNA=J013146O05;Oryzabase=20530;Expression=AK068301;TENOR=Os08t0401500-01;KEGG=Os08t0401500-01
Chr08	irgsp1_rep	five_prime_UTR	19161672	19161819	.	-	.	Parent=Os08t0401500-01
Chr08	irgsp1_rep	CDS	19161602	19161671	.	-	0	Parent=Os08t0401500-01
Chr08	irgsp1_rep	CDS	19160692	19161046	.	-	2	Parent=Os08t0401500-01
Chr08	irgsp1_rep	CDS	19159091	19159404	.	-	1	Parent=Os08t0401500-01
Chr08	irgsp1_rep	CDS	19158615	19159003	.	-	2	Parent=Os08t0401500-01
Chr08	irgsp1_rep	CDS	19157566	19158137	.	-	0	Parent=Os08t0401500-01
Chr08	irgsp1_rep	CDS	19157415	19157469	.	-	1	Parent=Os08t0401500-01
Chr08	irgsp1_rep	three_prime_UTR	19157206	19157414	.	-	.	Parent=Os08t0401500-01
Chr08	irgsp1_rep	mRNA	19173524	19180857	.	-	.	ID=Os08t0401800-00;Name=Os08t0401800-00;Locus_id=Os08g0401800;CGSNL Gene Symbol=PLDalpha7;CGSNL Gene Name=PHOSPHOLIPASE D alpha 7;Oryzabase Gene Symbol Synonym(s)=OsPLDalpha7%2C OsPLDtheta;Oryzabase Gene Name Synonym(s)=phospholipase D theta;Note=Similar to Phospholipase D.;Transcript_evidence=BT055884 (DDBJ);ORF_evidence=B8BAJ5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: phosphatidylcholine metabolic process (GO:0046470),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phospholipase D activity (GO:0004630),Molecular Function: calcium ion binding (GO:0005509);InterPro=Phospholipase D/Transphosphatidylase (IPR001736),Phospholipase D%2C plant (IPR011402),Phospholipase D (IPR015679),Phospholipase D%2C C-terminal (IPR024632);Oryzabase=8693;TENOR=Os08t0401800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	19180836	19180857	.	-	.	Parent=Os08t0401800-00
Chr08	irgsp1_rep	CDS	19180801	19180835	.	-	0	Parent=Os08t0401800-00
Chr08	irgsp1_rep	CDS	19176607	19176684	.	-	1	Parent=Os08t0401800-00
Chr08	irgsp1_rep	CDS	19174229	19176078	.	-	1	Parent=Os08t0401800-00
Chr08	irgsp1_rep	CDS	19173524	19173978	.	-	2	Parent=Os08t0401800-00
Chr08	irgsp1_rep	mRNA	19185600	19186253	.	-	.	ID=Os08t0402001-00;Name=Os08t0402001-00;Locus_id=Os08g0402001;Note=Hypothetical conserved gene.;Transcript_evidence=EU961719 (DDBJ);ORF_evidence=B8BAJ6 (UniProt);InterPro=Protein of unknown function DUF761%2C plant (IPR008480);TENOR=Os08t0402001-00;KEGG=Os08t0402001-00
Chr08	irgsp1_rep	CDS	19185600	19186253	.	-	0	Parent=Os08t0402001-00
Chr08	irgsp1_rep	mRNA	19190880	19192397	.	+	.	ID=Os08t0402100-01;Name=Os08t0402100-01;Locus_id=Os08g0402100;Note=Lateral organ boundaries%2C LOB domain containing protein.;Transcript_evidence=AK240652 (DDBJ%2C Best hit);ORF_evidence=NP_001175567.1 (RefSeq);InterPro=Lateral organ boundaries%2C LOB (IPR004883);NIAS_FLcDNA=J023098G11;TENOR=Os08t0402100-01;KEGG=Os08t0402100-01
Chr08	irgsp1_rep	CDS	19190880	19192160	.	+	0	Parent=Os08t0402100-01
Chr08	irgsp1_rep	three_prime_UTR	19192161	19192397	.	+	.	Parent=Os08t0402100-01
Chr08	irgsp1_rep	mRNA	19206651	19207802	.	+	.	ID=Os08t0402500-01;Name=Os08t0402500-01;Locus_id=Os08g0402500;Note=Protein of unknown function DUF761%2C plant domain containing protein.;Transcript_evidence=AK108881 (DDBJ%2C Best hit);ORF_evidence=A2YV12 (UniProt);InterPro=Protein of unknown function DUF761%2C plant (IPR008480);NIAS_FLcDNA=002-152-D07;Expression=AK108881;TENOR=Os08t0402500-01;KEGG=Os08t0402500-01
Chr08	irgsp1_rep	five_prime_UTR	19206651	19206775	.	+	.	Parent=Os08t0402500-01
Chr08	irgsp1_rep	CDS	19206776	19206930	.	+	0	Parent=Os08t0402500-01
Chr08	irgsp1_rep	CDS	19207183	19207567	.	+	1	Parent=Os08t0402500-01
Chr08	irgsp1_rep	three_prime_UTR	19207568	19207802	.	+	.	Parent=Os08t0402500-01
Chr08	irgsp1_rep	mRNA	19215829	19217807	.	+	.	ID=Os08t0402600-01;Name=Os08t0402600-01;Locus_id=Os08g0402600;Oryzabase Gene Symbol Synonym(s)=PPR;Oryzabase Gene Name Synonym(s)=Pentatricopeptide repeat (PPR) protein;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK121035 (DDBJ%2C Best hit);ORF_evidence=Q6Z277 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J023050N04;Oryzabase=22506;Expression=AK121035;TENOR=Os08t0402600-01;KEGG=Os08t0402600-01
Chr08	irgsp1_rep	CDS	19215829	19217493	.	+	0	Parent=Os08t0402600-01
Chr08	irgsp1_rep	three_prime_UTR	19217494	19217807	.	+	.	Parent=Os08t0402600-01
Chr08	irgsp1_rep	mRNA	19220446	19224534	.	+	.	ID=Os08t0402700-01;Name=Os08t0402700-01;Locus_id=Os08g0402700;Note=Similar to 10A19I.7.;Transcript_evidence=AK318525 (DDBJ%2C Best hit);ORF_evidence=B9G0T5 (UniProt);NIAS_FLcDNA=J065120H16;TENOR=Os08t0402700-01;KEGG=Os08t0402700-01
Chr08	irgsp1_rep	five_prime_UTR	19220446	19220565	.	+	.	Parent=Os08t0402700-01
Chr08	irgsp1_rep	CDS	19220566	19220612	.	+	0	Parent=Os08t0402700-01
Chr08	irgsp1_rep	CDS	19220776	19221082	.	+	1	Parent=Os08t0402700-01
Chr08	irgsp1_rep	CDS	19224004	19224045	.	+	0	Parent=Os08t0402700-01
Chr08	irgsp1_rep	three_prime_UTR	19224046	19224096	.	+	.	Parent=Os08t0402700-01
Chr08	irgsp1_rep	three_prime_UTR	19224253	19224534	.	+	.	Parent=Os08t0402700-01
Chr08	irgsp1_rep	mRNA	19222064	19227521	.	-	.	ID=Os08t0402800-01;Name=Os08t0402800-01;Locus_id=Os08g0402800;Note=Protein of unknown function DUF6%2C transmembrane domain containing protein.;Transcript_evidence=AK070604 (DDBJ%2C Best hit);ORF_evidence=B8BAJ8 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=J023059F08;Expression=AK070604;TENOR=Os08t0402800-01;KEGG=Os08t0402800-01
Chr08	irgsp1_rep	five_prime_UTR	19227367	19227521	.	-	.	Parent=Os08t0402800-01
Chr08	irgsp1_rep	CDS	19227128	19227366	.	-	0	Parent=Os08t0402800-01
Chr08	irgsp1_rep	CDS	19226490	19226552	.	-	1	Parent=Os08t0402800-01
Chr08	irgsp1_rep	CDS	19224302	19224418	.	-	1	Parent=Os08t0402800-01
Chr08	irgsp1_rep	CDS	19223897	19224125	.	-	1	Parent=Os08t0402800-01
Chr08	irgsp1_rep	CDS	19223544	19223702	.	-	0	Parent=Os08t0402800-01
Chr08	irgsp1_rep	CDS	19223111	19223262	.	-	0	Parent=Os08t0402800-01
Chr08	irgsp1_rep	CDS	19222258	19222342	.	-	1	Parent=Os08t0402800-01
Chr08	irgsp1_rep	three_prime_UTR	19222064	19222257	.	-	.	Parent=Os08t0402800-01
Chr08	irgsp1_rep	mRNA	19244409	19245490	.	+	.	ID=Os08t0403300-00;Name=Os08t0403300-00;Locus_id=Os08g0403300;CGSNL Gene Symbol=HMP39;CGSNL Gene Name=HEAVY METAL-ASSOCIATED PROTEIN 39;Oryzabase Gene Symbol Synonym(s)=OsHMP39;Oryzabase Gene Name Synonym(s)=Heavy metal-associated protein 39;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=FP093008 (DDBJ);ORF_evidence=NP_001147129.1 (RefSeq);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);Oryzabase=23554;TENOR=Os08t0403300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	19244409	19244722	.	+	.	Parent=Os08t0403300-00
Chr08	irgsp1_rep	CDS	19244723	19244885	.	+	0	Parent=Os08t0403300-00
Chr08	irgsp1_rep	CDS	19245198	19245487	.	+	2	Parent=Os08t0403300-00
Chr08	irgsp1_rep	three_prime_UTR	19245488	19245490	.	+	.	Parent=Os08t0403300-00
Chr08	irgsp1_rep	mRNA	19281246	19283397	.	+	.	ID=Os08t0403733-01;Name=Os08t0403733-01;Locus_id=Os08g0403733;Note=Hypothetical gene.;Transcript_evidence=AK288167 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090002K22;TENOR=Os08t0403733-01;KEGG=Os08t0403733-01
Chr08	irgsp1_rep	five_prime_UTR	19281246	19283043	.	+	.	Parent=Os08t0403733-01
Chr08	irgsp1_rep	CDS	19283044	19283397	.	+	0	Parent=Os08t0403733-01
Chr08	irgsp1_rep	mRNA	19292962	19294910	.	+	.	ID=Os08t0404000-00;Name=Os08t0404000-00;Locus_id=Os08g0404000;Note=UDP-glucuronosyl/UDP-glucosyltransferase domain containing protein.;Transcript_evidence=BT042944 (DDBJ);ORF_evidence=GeneMark;GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os08t0404000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	19292962	19293379	.	+	0	Parent=Os08t0404000-00
Chr08	irgsp1_rep	CDS	19293975	19294909	.	+	2	Parent=Os08t0404000-00
Chr08	irgsp1_rep	three_prime_UTR	19294910	19294910	.	+	.	Parent=Os08t0404000-00
Chr08	irgsp1_rep	mRNA	19304751	19305527	.	+	.	ID=Os08t0404200-00;Name=Os08t0404200-00;Locus_id=Os08g0404200;CGSNL Gene Symbol=RPL27-2;CGSNL Gene Name=MITOCHONDRIAL RIBOSOMAL PROTEIN L27;Oryzabase Gene Symbol Synonym(s)=rpl27-2%2C rpl27%2C mtRPL27a%2C S27;Oryzabase Gene Name Synonym(s)=mitochondrial ribosomal protein L27%2C F1 pollen sterility gene S27;Note=Similar to Chloroplast 50S ribosomal protein L27 (Fragment).;Transcript_evidence=AB496675 (DDBJ%2C Best hit);ORF_evidence=B6T4C5 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L27 (IPR001684),Ribosomal protein L27%2C conserved site (IPR018261);Oryzabase=6408;TENOR=Os08t0404200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	19304751	19304829	.	+	0	Parent=Os08t0404200-00
Chr08	irgsp1_rep	CDS	19304943	19305064	.	+	2	Parent=Os08t0404200-00
Chr08	irgsp1_rep	CDS	19305291	19305527	.	+	0	Parent=Os08t0404200-00
Chr08	irgsp1_rep	mRNA	19307392	19310989	.	+	.	ID=Os08t0404300-01;Name=Os08t0404300-01;Locus_id=Os08g0404300;CGSNL Gene Symbol=RPL27-1;CGSNL Gene Name=MITOCHONDRIAL RIBOSOMAL PROTEIN L27;Oryzabase Gene Symbol Synonym(s)=rpl27-1%2C rpl27%2C mtRPL27b%2C S27;Oryzabase Gene Name Synonym(s)=mitochondrial ribosomal protein L27%2C F1 pollen sterility gene S27;Note=Similar to Chloroplast 50S ribosomal protein L27 (Fragment).;Transcript_evidence=AK289194 (DDBJ%2C Best hit),AK063072 (DDBJ%2C Best hit);ORF_evidence=D2YZ62 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L27 (IPR001684),Ribosomal protein L27%2C conserved site (IPR018261);NIAS_FLcDNA=J100042M24,001-110-H03;Oryzabase=14281;TENOR=Os08t0404300-01
Chr08	irgsp1_rep	five_prime_UTR	19307392	19307582	.	+	.	Parent=Os08t0404300-01
Chr08	irgsp1_rep	five_prime_UTR	19309887	19309905	.	+	.	Parent=Os08t0404300-01
Chr08	irgsp1_rep	CDS	19309906	19309984	.	+	0	Parent=Os08t0404300-01
Chr08	irgsp1_rep	CDS	19310098	19310219	.	+	2	Parent=Os08t0404300-01
Chr08	irgsp1_rep	CDS	19310446	19310682	.	+	0	Parent=Os08t0404300-01
Chr08	irgsp1_rep	three_prime_UTR	19310683	19310989	.	+	.	Parent=Os08t0404300-01
Chr08	irgsp1_rep	mRNA	19314778	19315440	.	+	.	ID=Os08t0404350-00;Name=Os08t0404350-00;Locus_id=Os08g0404350;Note=Similar to FACT complex subunit SPT16.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7X923 (UniProt);TENOR=Os08t0404350-00;KEGG=Os08t0404350-00
Chr08	irgsp1_rep	CDS	19314778	19315440	.	+	0	Parent=Os08t0404350-00
Chr08	irgsp1_rep	mRNA	19317164	19318218	.	+	.	ID=Os08t0404400-01;Name=Os08t0404400-01;Locus_id=Os08g0404400;Note=Similar to FACT complex subunit SPT16.;Transcript_evidence=AK064241 (DDBJ%2C Best hit);ORF_evidence=NP_001105557.1 (RefSeq);NIAS_FLcDNA=002-105-B04;Expression=AK064241;TENOR=Os08t0404400-01;KEGG=Os08t0404400-01
Chr08	irgsp1_rep	CDS	19317164	19318087	.	+	0	Parent=Os08t0404400-01
Chr08	irgsp1_rep	three_prime_UTR	19318088	19318218	.	+	.	Parent=Os08t0404400-01
Chr08	irgsp1_rep	mRNA	19325136	19326185	.	+	.	ID=Os08t0404500-01;Name=Os08t0404500-01;Locus_id=Os08g0404500;Note=C1-like domain containing protein.;Transcript_evidence=AK103556 (DDBJ%2C Best hit);ORF_evidence=A2YV26 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: protein-disulfide reductase activity (GO:0047134);InterPro=C1-like (IPR011424);NIAS_FLcDNA=J033132H06;Expression=AK103556;TENOR=Os08t0404500-01;KEGG=Os08t0404500-01
Chr08	irgsp1_rep	five_prime_UTR	19325136	19325209	.	+	.	Parent=Os08t0404500-01
Chr08	irgsp1_rep	CDS	19325210	19326019	.	+	0	Parent=Os08t0404500-01
Chr08	irgsp1_rep	three_prime_UTR	19326020	19326185	.	+	.	Parent=Os08t0404500-01
Chr08	irgsp1_rep	mRNA	19325204	19326182	.	+	.	ID=Os08t0404500-02;Name=Os08t0404500-02;Locus_id=Os08g0404500;Note=C1-like domain containing protein.;Transcript_evidence=AK108951 (DDBJ%2C Best hit);ORF_evidence=A2YV26 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: protein-disulfide reductase activity (GO:0047134);InterPro=C1-like (IPR011424);NIAS_FLcDNA=002-153-C05;Expression=AK108951;TENOR=Os08t0404500-02;KEGG=Os08t0404500-02
Chr08	irgsp1_rep	five_prime_UTR	19325204	19325209	.	+	.	Parent=Os08t0404500-02
Chr08	irgsp1_rep	CDS	19325210	19326019	.	+	0	Parent=Os08t0404500-02
Chr08	irgsp1_rep	three_prime_UTR	19326020	19326182	.	+	.	Parent=Os08t0404500-02
Chr08	irgsp1_rep	mRNA	19334992	19339586	.	-	.	ID=Os08t0404700-00;Name=Os08t0404700-00;Locus_id=Os08g0404700;Note=Conserved hypothetical protein.;Transcript_evidence=EU968644 (DDBJ);ORF_evidence=Q6ZBD5 (UniProt);TENOR=Os08t0404700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	19339460	19339586	.	-	.	Parent=Os08t0404700-00
Chr08	irgsp1_rep	CDS	19339394	19339459	.	-	0	Parent=Os08t0404700-00
Chr08	irgsp1_rep	CDS	19334992	19335240	.	-	0	Parent=Os08t0404700-00
Chr08	irgsp1_rep	mRNA	19340472	19341332	.	-	.	ID=Os08t0404900-00;Name=Os08t0404900-00;Locus_id=Os08g0404900;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6ZBD4 (UniProt);TENOR=Os08t0404900-00;KEGG=Os08t0404900-00
Chr08	irgsp1_rep	CDS	19340472	19341332	.	-	0	Parent=Os08t0404900-00
Chr08	irgsp1_rep	mRNA	19382952	19386574	.	+	.	ID=Os08t0405700-01;Name=Os08t0405700-01;Locus_id=Os08g0405700;CGSNL Gene Symbol=HMP40;CGSNL Gene Name=HEAVY METAL-ASSOCIATED PROTEIN 40;Oryzabase Gene Symbol Synonym(s)=OsHMP40;Oryzabase Gene Name Synonym(s)=Heavy metal-associated protein 40;Note=Similar to Copper chaperone homolog CCH.;Transcript_evidence=AK108256 (DDBJ%2C Best hit);ORF_evidence=B8BAK9 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);NIAS_FLcDNA=002-141-A09;Oryzabase=23555;Expression=AK108256;TENOR=Os08t0405700-01;KEGG=Os08t0405700-01
Chr08	irgsp1_rep	five_prime_UTR	19382952	19383059	.	+	.	Parent=Os08t0405700-01
Chr08	irgsp1_rep	CDS	19383060	19383479	.	+	0	Parent=Os08t0405700-01
Chr08	irgsp1_rep	CDS	19384365	19384440	.	+	0	Parent=Os08t0405700-01
Chr08	irgsp1_rep	CDS	19386109	19386230	.	+	2	Parent=Os08t0405700-01
Chr08	irgsp1_rep	three_prime_UTR	19386231	19386574	.	+	.	Parent=Os08t0405700-01
Chr08	irgsp1_rep	mRNA	19427444	19428059	.	+	.	ID=Os08t0406150-00;Name=Os08t0406150-00;Locus_id=Os08g0406150;Note=Non-protein coding transcript.;Transcript_evidence=CT835989 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os08t0406150-00
Chr08	irgsp1_rep	exon	19427444	19428059	.	+	.	Parent=Os08t0406150-00
Chr08	irgsp1_rep	mRNA	19430807	19432690	.	+	.	ID=Os08t0406400-01;Name=Os08t0406400-01;Locus_id=Os08g0406400;CGSNL Gene Symbol=SULTR1%3B3;CGSNL Gene Name=SULPHATE TRANSPORTER 1%3B3;Oryzabase Gene Symbol Synonym(s)=OsSultr1%3B3%2C OsSul1%3B3;Oryzabase Gene Name Synonym(s)=sulphate transporter 1%3B3;Note=Similar to Sulfate transporter (Fragment).;Transcript_evidence=AK062031 (DDBJ%2C Best hit);ORF_evidence=B6UC24 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215);InterPro=Sulphate transporter/antisigma-factor antagonist STAS (IPR002645),Sulphate transporter (IPR011547);NIAS_FLcDNA=001-043-G12;Oryzabase=9316;Expression=AK062031;TENOR=Os08t0406400-01;KEGG=Os08t0406400-01
Chr08	irgsp1_rep	CDS	19430807	19430830	.	+	0	Parent=Os08t0406400-01
Chr08	irgsp1_rep	CDS	19430918	19431044	.	+	0	Parent=Os08t0406400-01
Chr08	irgsp1_rep	CDS	19431134	19431420	.	+	2	Parent=Os08t0406400-01
Chr08	irgsp1_rep	CDS	19431520	19431710	.	+	0	Parent=Os08t0406400-01
Chr08	irgsp1_rep	CDS	19431812	19431897	.	+	1	Parent=Os08t0406400-01
Chr08	irgsp1_rep	CDS	19431990	19432066	.	+	2	Parent=Os08t0406400-01
Chr08	irgsp1_rep	CDS	19432298	19432441	.	+	0	Parent=Os08t0406400-01
Chr08	irgsp1_rep	three_prime_UTR	19432442	19432690	.	+	.	Parent=Os08t0406400-01
Chr08	irgsp1_rep	mRNA	19430986	19432068	.	-	.	ID=Os08t0406450-00;Name=Os08t0406450-00;Locus_id=Os08g0406450;Note=Hypothetical protein.;Transcript_evidence=BT085343 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0406450-00
Chr08	irgsp1_rep	five_prime_UTR	19431285	19432068	.	-	.	Parent=Os08t0406450-00
Chr08	irgsp1_rep	CDS	19431054	19431284	.	-	0	Parent=Os08t0406450-00
Chr08	irgsp1_rep	three_prime_UTR	19430986	19431053	.	-	.	Parent=Os08t0406450-00
Chr08	irgsp1_rep	mRNA	19436058	19437470	.	-	.	ID=Os08t0406500-01;Name=Os08t0406500-01;Locus_id=Os08g0406500;Note=Kelch related domain containing protein.;Transcript_evidence=AK064160 (DDBJ%2C Best hit);ORF_evidence=A2YV39 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);NIAS_FLcDNA=002-103-F10;Expression=AK064160;TENOR=Os08t0406500-01;KEGG=Os08t0406500-01
Chr08	irgsp1_rep	five_prime_UTR	19437449	19437470	.	-	.	Parent=Os08t0406500-01
Chr08	irgsp1_rep	CDS	19436270	19437448	.	-	0	Parent=Os08t0406500-01
Chr08	irgsp1_rep	three_prime_UTR	19436058	19436269	.	-	.	Parent=Os08t0406500-01
Chr08	irgsp1_rep	mRNA	19441252	19442644	.	-	.	ID=Os08t0406600-01;Name=Os08t0406600-01;Locus_id=Os08g0406600;Oryzabase Gene Symbol Synonym(s)=OsMB12%2C MB12;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 12%2C MDC protein with a BTB domain 12%2C MDC protein having BTB domain 12;Note=Kelch related domain containing protein.;Transcript_evidence=AK064130 (DDBJ%2C Best hit);ORF_evidence=A3BSZ8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);NIAS_FLcDNA=002-102-F03;Oryzabase=21206;Expression=AK064130;TENOR=Os08t0406600-01;KEGG=Os08t0406600-01
Chr08	irgsp1_rep	five_prime_UTR	19442615	19442644	.	-	.	Parent=Os08t0406600-01
Chr08	irgsp1_rep	CDS	19441409	19442614	.	-	0	Parent=Os08t0406600-01
Chr08	irgsp1_rep	three_prime_UTR	19441252	19441408	.	-	.	Parent=Os08t0406600-01
Chr08	irgsp1_rep	mRNA	19446649	19447369	.	+	.	ID=Os08t0406700-01;Name=Os08t0406700-01;Locus_id=Os08g0406700;Note=Hypothetical protein.;Transcript_evidence=AK068370 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013150N18;Expression=AK068370;TENOR=Os08t0406700-01;KEGG=Os08t0406700-01
Chr08	irgsp1_rep	five_prime_UTR	19446649	19446822	.	+	.	Parent=Os08t0406700-01
Chr08	irgsp1_rep	CDS	19446823	19447302	.	+	0	Parent=Os08t0406700-01
Chr08	irgsp1_rep	three_prime_UTR	19447303	19447369	.	+	.	Parent=Os08t0406700-01
Chr08	irgsp1_rep	mRNA	19450487	19452370	.	+	.	ID=Os08t0406900-01;Name=Os08t0406900-01;Locus_id=Os08g0406900;Note=Hypothetical protein.;Transcript_evidence=AK064448 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-110-F03;Expression=AK064448;TENOR=Os08t0406900-01;KEGG=Os08t0406900-01
Chr08	irgsp1_rep	five_prime_UTR	19450487	19451531	.	+	.	Parent=Os08t0406900-01
Chr08	irgsp1_rep	CDS	19451532	19451897	.	+	0	Parent=Os08t0406900-01
Chr08	irgsp1_rep	three_prime_UTR	19451898	19452370	.	+	.	Parent=Os08t0406900-01
Chr08	irgsp1_rep	mRNA	19456436	19460442	.	+	.	ID=Os08t0407000-01;Name=Os08t0407000-01;Locus_id=Os08g0407000;RAP-DB Gene Symbol Synonym(s)=PDD;RAP-DB Gene Name Synonym(s)=PLEIOTROPIC DEVELOPMENTAL DEFECTS;Note=tRNA-modifying GTPase belonging to the TrmE (tRNA modification E) family;Transcript_evidence=AK318593;ORF_evidence=Q6Z9X4;GO=Biological Process: tRNA modification (GO:0006400),Molecular Function: GTPase activity (GO:0003924),Molecular Function: protein binding (GO:0005515),Molecular Function: GTP binding (GO:0005525);InterPro=GTP-binding protein TrmE/Glycine cleavage system T protein%2C domain 1 (IPR027266),P-loop containing nucleoside triphosphate hydrolase (IPR027417),tRNA modification GTPase MnmE domain 2 (IPR027368),tRNA modification GTPase MnmE (IPR004520),GTP-binding protein TrmE%2C N-terminal (IPR018948),MnmE%2C helical domain (IPR025867),GTP binding domain (IPR006073),Small GTP-binding protein domain (IPR005225),TrmE-type guanine nucleotide-binding domain (IPR031168);NIAS_FLcDNA=J100055K16;Manual Curation=April 24%2C 2020;Literature_PMID=32327539;TENOR=Os08t0407000-01;KEGG=Os08t0407000-01;Subcellular location=chloroplast (GO:0009507)
Chr08	irgsp1_rep	five_prime_UTR	19456436	19456436	.	+	.	Parent=Os08t0407000-01
Chr08	irgsp1_rep	CDS	19456437	19456892	.	+	0	Parent=Os08t0407000-01
Chr08	irgsp1_rep	CDS	19456964	19457102	.	+	0	Parent=Os08t0407000-01
Chr08	irgsp1_rep	CDS	19457501	19457622	.	+	2	Parent=Os08t0407000-01
Chr08	irgsp1_rep	CDS	19457926	19458129	.	+	0	Parent=Os08t0407000-01
Chr08	irgsp1_rep	CDS	19458222	19458281	.	+	0	Parent=Os08t0407000-01
Chr08	irgsp1_rep	CDS	19458869	19459007	.	+	0	Parent=Os08t0407000-01
Chr08	irgsp1_rep	CDS	19459121	19459239	.	+	2	Parent=Os08t0407000-01
Chr08	irgsp1_rep	CDS	19459430	19459654	.	+	0	Parent=Os08t0407000-01
Chr08	irgsp1_rep	CDS	19459775	19459969	.	+	0	Parent=Os08t0407000-01
Chr08	irgsp1_rep	three_prime_UTR	19459970	19459981	.	+	.	Parent=Os08t0407000-01
Chr08	irgsp1_rep	three_prime_UTR	19460065	19460442	.	+	.	Parent=Os08t0407000-01
Chr08	irgsp1_rep	mRNA	19460658	19460753	.	+	.	ID=Os08t0407101-00;Name=Os08t0407101-00;Locus_id=Os08g0407101;Note=Non-protein coding transcript.;Transcript_evidence=EU943375 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0407101-00
Chr08	irgsp1_rep	exon	19460658	19460753	.	+	.	Parent=Os08t0407101-00
Chr08	irgsp1_rep	mRNA	19463943	19469078	.	+	.	ID=Os08t0407200-01;Name=Os08t0407200-01;Locus_id=Os08g0407200;RAP-DB Gene Symbol Synonym(s)=PAY1;RAP-DB Gene Name Synonym(s)=PLANT ARCHITECTURE AND YIELD 1;CGSNL Gene Symbol=PAY1;CGSNL Gene Name=PLANT ARCHITECTURE AND YIELD 1;Note=Auxin polar transport and distribution%2C Plant architecture and grain yield;Transcript_evidence=KP233774 (indica),AK067568,AK099113,AK120820;ORF_evidence=A2YV45,Q6Z9X3;InterPro=Peptidase S1%2C PA clan (IPR009003);NIAS_FLcDNA=J013111J10, J023034D12, J023016N14;Manual Curation=August 21%2C 2015;Literature_PMID=26095647;Oryzabase=22348;Expression=AK067568;TENOR=Os08t0407200-01;KEGG=Os08t0407200-01
Chr08	irgsp1_rep	five_prime_UTR	19463943	19464249	.	+	.	Parent=Os08t0407200-01
Chr08	irgsp1_rep	five_prime_UTR	19466377	19466438	.	+	.	Parent=Os08t0407200-01
Chr08	irgsp1_rep	CDS	19466439	19466915	.	+	0	Parent=Os08t0407200-01
Chr08	irgsp1_rep	CDS	19466992	19467135	.	+	0	Parent=Os08t0407200-01
Chr08	irgsp1_rep	CDS	19467432	19467672	.	+	0	Parent=Os08t0407200-01
Chr08	irgsp1_rep	CDS	19467857	19468357	.	+	2	Parent=Os08t0407200-01
Chr08	irgsp1_rep	CDS	19468467	19468876	.	+	2	Parent=Os08t0407200-01
Chr08	irgsp1_rep	three_prime_UTR	19468877	19469078	.	+	.	Parent=Os08t0407200-01
Chr08	irgsp1_rep	mRNA	19465324	19469181	.	+	.	ID=Os08t0407200-02;Name=Os08t0407200-02;Locus_id=Os08g0407200;CGSNL Gene Symbol=PAY1;CGSNL Gene Name=PLANT ARCHITECTURE AND YIELD 1;Note=Similar to predicted protein.;Transcript_evidence=AK067656 (DDBJ%2C Best hit);ORF_evidence=B4XT64 (UniProt);NIAS_FLcDNA=J013114M11;Oryzabase=22348;Expression=AK067656;TENOR=Os08t0407200-02;KEGG=Os08t0407200-02
Chr08	irgsp1_rep	five_prime_UTR	19465324	19466438	.	+	.	Parent=Os08t0407200-02
Chr08	irgsp1_rep	CDS	19466439	19467014	.	+	0	Parent=Os08t0407200-02
Chr08	irgsp1_rep	three_prime_UTR	19467015	19467135	.	+	.	Parent=Os08t0407200-02
Chr08	irgsp1_rep	three_prime_UTR	19467432	19467672	.	+	.	Parent=Os08t0407200-02
Chr08	irgsp1_rep	three_prime_UTR	19467857	19468357	.	+	.	Parent=Os08t0407200-02
Chr08	irgsp1_rep	three_prime_UTR	19468467	19469181	.	+	.	Parent=Os08t0407200-02
Chr08	irgsp1_rep	mRNA	19475051	19475133	.	+	.	ID=Os08t0407400-00;Name=Os08t0407400-00;Locus_id=Os08g0407400;Note=Non-protein coding transcript.;Transcript_evidence=EU943375 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0407400-00
Chr08	irgsp1_rep	exon	19475051	19475133	.	+	.	Parent=Os08t0407400-00
Chr08	irgsp1_rep	mRNA	19490442	19491638	.	-	.	ID=Os08t0407600-01;Name=Os08t0407600-01;Locus_id=Os08g0407600;Note=Protein of unknown function DUF581 family protein.;Transcript_evidence=AK099936 (DDBJ%2C Best hit);ORF_evidence=NP_564160.1 (RefSeq);InterPro=Protein of unknown function DUF581 (IPR007650);NIAS_FLcDNA=J013119L03;Expression=AK099936;TENOR=Os08t0407600-01;KEGG=Os08t0407600-01
Chr08	irgsp1_rep	five_prime_UTR	19491415	19491638	.	-	.	Parent=Os08t0407600-01
Chr08	irgsp1_rep	CDS	19491002	19491414	.	-	0	Parent=Os08t0407600-01
Chr08	irgsp1_rep	CDS	19490726	19490912	.	-	1	Parent=Os08t0407600-01
Chr08	irgsp1_rep	three_prime_UTR	19490442	19490725	.	-	.	Parent=Os08t0407600-01
Chr08	irgsp1_rep	mRNA	19522108	19528779	.	+	.	ID=Os08t0408200-01;Name=Os08t0408200-01;Locus_id=Os08g0408200;RAP-DB Gene Symbol Synonym(s)=SRWD4%2C SRWD4%2C OsWD40-160;RAP-DB Gene Name Synonym(s)=SALT RESPONSIVE WD40 PROTEIN 4%2C salt responsive WD40 protein 4;CGSNL Gene Symbol=SRWD4;CGSNL Gene Name=SALT RESPONSIVE WD40 PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=SRWD4%2C OsWD40-160;Oryzabase Gene Name Synonym(s)=salt responsive WD40 protein 4;Note=WD40 subfamily protein%2C Salt stress;Transcript_evidence=AK111715 (Genbank);ORF_evidence=Q6Z9W0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J023019D09;Manual Curation=June 9%2C 2009;Literature_PMID=18755256;Oryzabase=8213;Expression=AK111715;TENOR=Os08t0408200-01;KEGG=Os08t0408200-01
Chr08	irgsp1_rep	five_prime_UTR	19522108	19522283	.	+	.	Parent=Os08t0408200-01
Chr08	irgsp1_rep	five_prime_UTR	19522433	19522474	.	+	.	Parent=Os08t0408200-01
Chr08	irgsp1_rep	CDS	19522475	19522615	.	+	0	Parent=Os08t0408200-01
Chr08	irgsp1_rep	CDS	19522730	19522897	.	+	0	Parent=Os08t0408200-01
Chr08	irgsp1_rep	CDS	19526148	19526234	.	+	0	Parent=Os08t0408200-01
Chr08	irgsp1_rep	CDS	19526792	19526926	.	+	0	Parent=Os08t0408200-01
Chr08	irgsp1_rep	CDS	19527019	19527123	.	+	0	Parent=Os08t0408200-01
Chr08	irgsp1_rep	CDS	19527209	19527300	.	+	0	Parent=Os08t0408200-01
Chr08	irgsp1_rep	CDS	19527388	19527493	.	+	1	Parent=Os08t0408200-01
Chr08	irgsp1_rep	CDS	19527579	19527665	.	+	0	Parent=Os08t0408200-01
Chr08	irgsp1_rep	CDS	19527757	19528170	.	+	0	Parent=Os08t0408200-01
Chr08	irgsp1_rep	three_prime_UTR	19528171	19528779	.	+	.	Parent=Os08t0408200-01
Chr08	irgsp1_rep	mRNA	19532162	19533149	.	-	.	ID=Os08t0408300-02;Name=Os08t0408300-02;Locus_id=Os08g0408300;Note=Conserved hypothetical protein.;Transcript_evidence=AK059926 (DDBJ%2C Best hit),AK100845 (DDBJ%2C Best hit);ORF_evidence=B8AN28 (UniProt);NIAS_FLcDNA=006-210-A01,J023123H01;TENOR=Os08t0408300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	19532462	19533149	.	-	.	Parent=Os08t0408300-02
Chr08	irgsp1_rep	CDS	19532369	19532461	.	-	0	Parent=Os08t0408300-02
Chr08	irgsp1_rep	three_prime_UTR	19532162	19532368	.	-	.	Parent=Os08t0408300-02
Chr08	irgsp1_rep	mRNA	19547328	19548978	.	+	.	ID=Os08t0408500-01;Name=Os08t0408500-01;Locus_id=Os08g0408500;RAP-DB Gene Symbol Synonym(s)=OsERF48;RAP-DB Gene Name Synonym(s)=ethylene response factor 48;CGSNL Gene Symbol=ERF48;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 48;Oryzabase Gene Symbol Synonym(s)=OsERF#048%2C OsERF048%2C OsERF48%2C AP2/EREBP#170%2C AP2/EREBP170;Oryzabase Gene Name Synonym(s)=ethylene response factor 48%2C APETALA2/ethylene-responsive element binding protein 170;Note=Drought-inducible transcriptional activator%2C ERF transcription factor%2C Regulation of calmodulin-like protein%2C Drought tolerance;Transcript_evidence=AK105725,AK068312;ORF_evidence=Q6Z9V4;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-binding transcription factor activity (GO:0003700);InterPro=AP2/ERF domain superfamily (IPR036955),DNA-binding domain superfamily (IPR016177),AP2/ERF domain (IPR001471);NIAS_FLcDNA=001-201-G08,J013151K12;Manual Curation=December 11%2C 2018;Literature_PMID=28244201;Oryzabase=10565;Expression=AK105725;TENOR=Os08t0408500-01;KEGG=Os08t0408500-01;Subcellular location=nucleus (GO:0005634)
Chr08	irgsp1_rep	five_prime_UTR	19547328	19547824	.	+	.	Parent=Os08t0408500-01
Chr08	irgsp1_rep	CDS	19547825	19548667	.	+	0	Parent=Os08t0408500-01
Chr08	irgsp1_rep	three_prime_UTR	19548668	19548978	.	+	.	Parent=Os08t0408500-01
Chr08	irgsp1_rep	mRNA	19578772	19582453	.	+	.	ID=Os08t0409100-01;Name=Os08t0409100-01;Locus_id=Os08g0409100;CGSNL Gene Symbol=TPP6;CGSNL Gene Name=TREHALOSE-6-PHOSPHATE PHOSHPHATASE 6;Oryzabase Gene Symbol Synonym(s)=OsTPP6;Note=Trehalose-6-phosphate phosphatase.;Transcript_evidence=AK243504 (DDBJ%2C Best hit);ORF_evidence=Q1W5S0 (UniProt);GO=Biological Process: trehalose biosynthetic process (GO:0005992),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Trehalose-phosphatase (IPR003337),HAD-superfamily hydrolase%2C subfamily IIB (IPR006379),HAD-like domain (IPR023214);NIAS_FLcDNA=J100074N11;Oryzabase=9981;TENOR=Os08t0409100-01;KEGG=Os08t0409100-01
Chr08	irgsp1_rep	five_prime_UTR	19578772	19578917	.	+	.	Parent=Os08t0409100-01
Chr08	irgsp1_rep	CDS	19578918	19579184	.	+	0	Parent=Os08t0409100-01
Chr08	irgsp1_rep	CDS	19579277	19579417	.	+	0	Parent=Os08t0409100-01
Chr08	irgsp1_rep	CDS	19579501	19579572	.	+	0	Parent=Os08t0409100-01
Chr08	irgsp1_rep	CDS	19579666	19579764	.	+	0	Parent=Os08t0409100-01
Chr08	irgsp1_rep	CDS	19579856	19579909	.	+	0	Parent=Os08t0409100-01
Chr08	irgsp1_rep	CDS	19580045	19580146	.	+	0	Parent=Os08t0409100-01
Chr08	irgsp1_rep	CDS	19580410	19580487	.	+	0	Parent=Os08t0409100-01
Chr08	irgsp1_rep	CDS	19580690	19580759	.	+	0	Parent=Os08t0409100-01
Chr08	irgsp1_rep	CDS	19580885	19581048	.	+	2	Parent=Os08t0409100-01
Chr08	irgsp1_rep	CDS	19581870	19581935	.	+	0	Parent=Os08t0409100-01
Chr08	irgsp1_rep	three_prime_UTR	19581936	19582453	.	+	.	Parent=Os08t0409100-01
Chr08	irgsp1_rep	mRNA	19580018	19580200	.	-	.	ID=Os08t0409233-00;Name=Os08t0409233-00;Locus_id=Os08g0409233;Note=Hypothetical conserved gene.;Transcript_evidence=BT086933 (DDBJ);ORF_evidence=NP_001182960.1 (RefSeq);TENOR=Os08t0409233-00;KEGG=Os08t0409233-00
Chr08	irgsp1_rep	CDS	19580018	19580200	.	-	0	Parent=Os08t0409233-00
Chr08	irgsp1_rep	mRNA	19610458	19612119	.	+	.	ID=Os08t0409500-01;Name=Os08t0409500-01;Locus_id=Os08g0409500;Oryzabase Gene Symbol Synonym(s)=OsVQ33;Oryzabase Gene Name Synonym(s)=VQ motif-containing protein 33;Note=VQ domain containing protein.;Transcript_evidence=AK109792 (DDBJ%2C Best hit);ORF_evidence=A2YV57 (UniProt);InterPro=VQ (IPR008889);NIAS_FLcDNA=002-147-D10;Oryzabase=13649;Expression=AK109792;TENOR=Os08t0409500-01;KEGG=Os08t0409500-01
Chr08	irgsp1_rep	five_prime_UTR	19610458	19610639	.	+	.	Parent=Os08t0409500-01
Chr08	irgsp1_rep	CDS	19610640	19611920	.	+	0	Parent=Os08t0409500-01
Chr08	irgsp1_rep	three_prime_UTR	19611921	19612119	.	+	.	Parent=Os08t0409500-01
Chr08	irgsp1_rep	mRNA	19632714	19635614	.	+	.	ID=Os08t0409900-01;Name=Os08t0409900-01;Locus_id=Os08g0409900;Note=Major facilitator superfamily protein.;Transcript_evidence=AK287539 (DDBJ%2C Best hit);ORF_evidence=NP_001151945.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J065009P10;TENOR=Os08t0409900-01;KEGG=Os08t0409900-01
Chr08	irgsp1_rep	five_prime_UTR	19632714	19632774	.	+	.	Parent=Os08t0409900-01
Chr08	irgsp1_rep	CDS	19632775	19633065	.	+	0	Parent=Os08t0409900-01
Chr08	irgsp1_rep	CDS	19633622	19634367	.	+	0	Parent=Os08t0409900-01
Chr08	irgsp1_rep	CDS	19634763	19635252	.	+	1	Parent=Os08t0409900-01
Chr08	irgsp1_rep	three_prime_UTR	19635253	19635614	.	+	.	Parent=Os08t0409900-01
Chr08	irgsp1_rep	mRNA	19641846	19645012	.	-	.	ID=Os08t0410266-00;Name=Os08t0410266-00;Locus_id=Os08g0410266;Oryzabase Gene Symbol Synonym(s)=OsFbox444%2C Os_F0648;Oryzabase Gene Name Synonym(s)=F-box protein 444;Note=Protein of unknown function DUF295 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001175572.1 (RefSeq);InterPro=Protein of unknown function DUF295 (IPR005174);Oryzabase=17214;TENOR=Os08t0410266-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	19644281	19645012	.	-	0	Parent=Os08t0410266-00
Chr08	irgsp1_rep	CDS	19643771	19643836	.	-	0	Parent=Os08t0410266-00
Chr08	irgsp1_rep	CDS	19641846	19642505	.	-	0	Parent=Os08t0410266-00
Chr08	irgsp1_rep	mRNA	19647162	19648087	.	-	.	ID=Os08t0410350-01;Name=Os08t0410350-01;Locus_id=Os08g0410350;Note=Hypothetical gene.;Transcript_evidence=AK241574 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065180G20;TENOR=Os08t0410350-01;KEGG=Os08t0410350-01
Chr08	irgsp1_rep	CDS	19647731	19648087	.	-	0	Parent=Os08t0410350-01
Chr08	irgsp1_rep	three_prime_UTR	19647162	19647730	.	-	.	Parent=Os08t0410350-01
Chr08	irgsp1_rep	mRNA	19647725	19649962	.	+	.	ID=Os08t0410500-01;Name=Os08t0410500-01;Locus_id=Os08g0410500;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Similar to carbohydrate transporter/ sugar porter/ transporter.;Transcript_evidence=AK243260 (DDBJ%2C Best hit);ORF_evidence=NP_001149291.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J100049A01;Oryzabase=23676;TENOR=Os08t0410500-01;KEGG=Os08t0410500-01
Chr08	irgsp1_rep	five_prime_UTR	19647725	19647745	.	+	.	Parent=Os08t0410500-01
Chr08	irgsp1_rep	CDS	19647746	19648048	.	+	0	Parent=Os08t0410500-01
Chr08	irgsp1_rep	CDS	19648504	19649231	.	+	0	Parent=Os08t0410500-01
Chr08	irgsp1_rep	CDS	19649318	19649747	.	+	1	Parent=Os08t0410500-01
Chr08	irgsp1_rep	three_prime_UTR	19649748	19649962	.	+	.	Parent=Os08t0410500-01
Chr08	irgsp1_rep	mRNA	19657493	19661886	.	-	.	ID=Os08t0410900-01;Name=Os08t0410900-01;Locus_id=Os08g0410900;Note=Hypothetical gene.;Transcript_evidence=AK106713 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-114-F09;Expression=AK106713;TENOR=Os08t0410900-01;KEGG=Os08t0410900-01
Chr08	irgsp1_rep	CDS	19661608	19661886	.	-	0	Parent=Os08t0410900-01
Chr08	irgsp1_rep	three_prime_UTR	19661573	19661607	.	-	.	Parent=Os08t0410900-01
Chr08	irgsp1_rep	three_prime_UTR	19661214	19661301	.	-	.	Parent=Os08t0410900-01
Chr08	irgsp1_rep	three_prime_UTR	19660240	19660956	.	-	.	Parent=Os08t0410900-01
Chr08	irgsp1_rep	three_prime_UTR	19658871	19658929	.	-	.	Parent=Os08t0410900-01
Chr08	irgsp1_rep	three_prime_UTR	19658015	19658154	.	-	.	Parent=Os08t0410900-01
Chr08	irgsp1_rep	three_prime_UTR	19657493	19657800	.	-	.	Parent=Os08t0410900-01
Chr08	irgsp1_rep	mRNA	19657861	19659417	.	+	.	ID=Os08t0410950-00;Name=Os08t0410950-00;Locus_id=Os08g0410950;Note=Hypothetical conserved gene.;Transcript_evidence=CT841937 (DDBJ%2C Best hit);ORF_evidence=B8B4J3 (UniProt);TENOR=Os08t0410950-00;KEGG=Os08t0410950-00
Chr08	irgsp1_rep	five_prime_UTR	19657861	19659120	.	+	.	Parent=Os08t0410950-00
Chr08	irgsp1_rep	CDS	19659121	19659306	.	+	0	Parent=Os08t0410950-00
Chr08	irgsp1_rep	three_prime_UTR	19659307	19659417	.	+	.	Parent=Os08t0410950-00
Chr08	irgsp1_rep	mRNA	19661984	19663477	.	+	.	ID=Os08t0411000-00;Name=Os08t0411000-00;Locus_id=Os08g0411000;Note=Prephenate dehydratase domain containing protein.;Transcript_evidence=EU972548 (DDBJ);ORF_evidence=Q6ZAJ5 (UniProt);GO=Biological Process: L-phenylalanine biosynthetic process (GO:0009094),Molecular Function: prephenate dehydratase activity (GO:0004664);InterPro=Prephenate dehydratase (IPR001086);TENOR=Os08t0411000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	19661984	19662980	.	+	0	Parent=Os08t0411000-00
Chr08	irgsp1_rep	CDS	19663053	19663477	.	+	2	Parent=Os08t0411000-00
Chr08	irgsp1_rep	mRNA	19672758	19676628	.	-	.	ID=Os08t0411200-01;Name=Os08t0411200-01;Locus_id=Os08g0411200;Note=Methyltransferase type 11 domain containing protein.;Transcript_evidence=AK120890 (DDBJ%2C Best hit);ORF_evidence=NP_001150427.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Methyltransferase type 11 (IPR013216);NIAS_FLcDNA=J023029G09;Expression=AK120890;TENOR=Os08t0411200-01;KEGG=Os08t0411200-01
Chr08	irgsp1_rep	five_prime_UTR	19676473	19676628	.	-	.	Parent=Os08t0411200-01
Chr08	irgsp1_rep	CDS	19676278	19676472	.	-	0	Parent=Os08t0411200-01
Chr08	irgsp1_rep	CDS	19676004	19676104	.	-	0	Parent=Os08t0411200-01
Chr08	irgsp1_rep	CDS	19675760	19675906	.	-	1	Parent=Os08t0411200-01
Chr08	irgsp1_rep	CDS	19675312	19675393	.	-	1	Parent=Os08t0411200-01
Chr08	irgsp1_rep	CDS	19674595	19674785	.	-	0	Parent=Os08t0411200-01
Chr08	irgsp1_rep	CDS	19674282	19674393	.	-	1	Parent=Os08t0411200-01
Chr08	irgsp1_rep	CDS	19673571	19673678	.	-	0	Parent=Os08t0411200-01
Chr08	irgsp1_rep	CDS	19673194	19673334	.	-	0	Parent=Os08t0411200-01
Chr08	irgsp1_rep	three_prime_UTR	19673139	19673193	.	-	.	Parent=Os08t0411200-01
Chr08	irgsp1_rep	three_prime_UTR	19672758	19673042	.	-	.	Parent=Os08t0411200-01
Chr08	irgsp1_rep	mRNA	19683211	19685087	.	-	.	ID=Os08t0411250-00;Name=Os08t0411250-00;Locus_id=Os08g0411250;Note=Hypothetical protein.;Transcript_evidence=tplb0022c13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0411250-00
Chr08	irgsp1_rep	five_prime_UTR	19684381	19685087	.	-	.	Parent=Os08t0411250-00
Chr08	irgsp1_rep	CDS	19683298	19684380	.	-	0	Parent=Os08t0411250-00
Chr08	irgsp1_rep	three_prime_UTR	19683211	19683297	.	-	.	Parent=Os08t0411250-00
Chr08	irgsp1_rep	mRNA	19683374	19684822	.	+	.	ID=Os08t0411300-00;Name=Os08t0411300-00;Locus_id=Os08g0411300;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001061787.1 (RefSeq);TENOR=Os08t0411300-00;KEGG=Os08t0411300-00
Chr08	irgsp1_rep	CDS	19683374	19684822	.	+	0	Parent=Os08t0411300-00
Chr08	irgsp1_rep	mRNA	19693448	19698092	.	+	.	ID=Os08t0411500-01;Name=Os08t0411500-01;Locus_id=Os08g0411500;Oryzabase Gene Symbol Synonym(s)=OsSTA213;Note=Conserved hypothetical protein.;Transcript_evidence=AK071467 (DDBJ%2C Best hit);ORF_evidence=B8BAR8 (UniProt);NIAS_FLcDNA=J023098J02;Oryzabase=19485;Expression=AK071467;TENOR=Os08t0411500-01;KEGG=Os08t0411500-01
Chr08	irgsp1_rep	five_prime_UTR	19693448	19693601	.	+	.	Parent=Os08t0411500-01
Chr08	irgsp1_rep	five_prime_UTR	19694625	19694630	.	+	.	Parent=Os08t0411500-01
Chr08	irgsp1_rep	CDS	19694631	19694739	.	+	0	Parent=Os08t0411500-01
Chr08	irgsp1_rep	CDS	19697592	19697719	.	+	2	Parent=Os08t0411500-01
Chr08	irgsp1_rep	three_prime_UTR	19697720	19697796	.	+	.	Parent=Os08t0411500-01
Chr08	irgsp1_rep	three_prime_UTR	19697913	19698092	.	+	.	Parent=Os08t0411500-01
Chr08	irgsp1_rep	mRNA	19699180	19703231	.	+	.	ID=Os08t0411800-01;Name=Os08t0411800-01;Locus_id=Os08g0411800;Note=Hypothetical protein.;Transcript_evidence=AK119368 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-131-H06;TENOR=Os08t0411800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	19699180	19699277	.	+	.	Parent=Os08t0411800-01
Chr08	irgsp1_rep	CDS	19699278	19699628	.	+	0	Parent=Os08t0411800-01
Chr08	irgsp1_rep	three_prime_UTR	19699629	19703231	.	+	.	Parent=Os08t0411800-01
Chr08	irgsp1_rep	mRNA	19701779	19702345	.	-	.	ID=Os08t0411850-00;Name=Os08t0411850-00;Locus_id=Os08g0411850;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6Z572 (UniProt);TENOR=Os08t0411850-00
Chr08	irgsp1_rep	CDS	19701779	19702345	.	-	0	Parent=Os08t0411850-00
Chr08	irgsp1_rep	mRNA	19703902	19707972	.	-	.	ID=Os08t0411900-01;Name=Os08t0411900-01;Locus_id=Os08g0411900;Note=Conserved hypothetical protein.;Transcript_evidence=AK243392 (DDBJ%2C Best hit);ORF_evidence=B9G0V4 (UniProt);NIAS_FLcDNA=J100064C10;TENOR=Os08t0411900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	19707825	19707972	.	-	.	Parent=Os08t0411900-01
Chr08	irgsp1_rep	CDS	19707580	19707824	.	-	0	Parent=Os08t0411900-01
Chr08	irgsp1_rep	CDS	19706751	19706800	.	-	1	Parent=Os08t0411900-01
Chr08	irgsp1_rep	CDS	19705271	19705353	.	-	2	Parent=Os08t0411900-01
Chr08	irgsp1_rep	three_prime_UTR	19703902	19705270	.	-	.	Parent=Os08t0411900-01
Chr08	irgsp1_rep	mRNA	19715537	19719676	.	-	.	ID=Os08t0412100-01;Name=Os08t0412100-01;Locus_id=Os08g0412100;Note=NB-ARC domain containing protein.;Transcript_evidence=AK072641 (DDBJ%2C Best hit);ORF_evidence=A2YV70 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J023132L07;Expression=AK072641;TENOR=Os08t0412100-01;KEGG=Os08t0412100-01
Chr08	irgsp1_rep	five_prime_UTR	19719131	19719676	.	-	.	Parent=Os08t0412100-01
Chr08	irgsp1_rep	CDS	19718274	19719130	.	-	0	Parent=Os08t0412100-01
Chr08	irgsp1_rep	CDS	19715720	19717748	.	-	1	Parent=Os08t0412100-01
Chr08	irgsp1_rep	three_prime_UTR	19715537	19715719	.	-	.	Parent=Os08t0412100-01
Chr08	irgsp1_rep	mRNA	19721383	19725995	.	-	.	ID=Os08t0412200-01;Name=Os08t0412200-01;Locus_id=Os08g0412200;Oryzabase Gene Name Synonym(s)=RNA-binding domain protein;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK099367 (DDBJ%2C Best hit),AK059631 (DDBJ%2C Best hit),AK104578 (DDBJ%2C Best hit);ORF_evidence=Q70KT2 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033051M06,001-031-A04,006-307-B02;Oryzabase=15992;TENOR=Os08t0412200-01
Chr08	irgsp1_rep	five_prime_UTR	19725892	19725995	.	-	.	Parent=Os08t0412200-01
Chr08	irgsp1_rep	five_prime_UTR	19725748	19725774	.	-	.	Parent=Os08t0412200-01
Chr08	irgsp1_rep	CDS	19725658	19725747	.	-	0	Parent=Os08t0412200-01
Chr08	irgsp1_rep	CDS	19725432	19725555	.	-	0	Parent=Os08t0412200-01
Chr08	irgsp1_rep	CDS	19723632	19723687	.	-	2	Parent=Os08t0412200-01
Chr08	irgsp1_rep	CDS	19723513	19723560	.	-	0	Parent=Os08t0412200-01
Chr08	irgsp1_rep	CDS	19723322	19723419	.	-	0	Parent=Os08t0412200-01
Chr08	irgsp1_rep	CDS	19722744	19722813	.	-	1	Parent=Os08t0412200-01
Chr08	irgsp1_rep	CDS	19722560	19722670	.	-	0	Parent=Os08t0412200-01
Chr08	irgsp1_rep	CDS	19721589	19721636	.	-	0	Parent=Os08t0412200-01
Chr08	irgsp1_rep	three_prime_UTR	19721383	19721588	.	-	.	Parent=Os08t0412200-01
Chr08	irgsp1_rep	mRNA	19730276	19733253	.	+	.	ID=Os08t0412401-01;Name=Os08t0412401-01;Locus_id=Os08g0412401;Oryzabase Gene Symbol Synonym(s)=OsAPRL4;Oryzabase Gene Name Synonym(s)=adenosine 5'-phosphosulfate reductase-like protein 4;Note=Similar to Adenosine 5'-phosphosulfate reductase-like.;Transcript_evidence=AK243155 (DDBJ%2C Best hit);ORF_evidence=Q5DJV7 (UniProt);InterPro=Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=J100033B12;Oryzabase=14071;TENOR=Os08t0412401-01;KEGG=Os08t0412401-01
Chr08	irgsp1_rep	five_prime_UTR	19730276	19730276	.	+	.	Parent=Os08t0412401-01
Chr08	irgsp1_rep	CDS	19730277	19730683	.	+	0	Parent=Os08t0412401-01
Chr08	irgsp1_rep	CDS	19731888	19732012	.	+	1	Parent=Os08t0412401-01
Chr08	irgsp1_rep	CDS	19732322	19732602	.	+	2	Parent=Os08t0412401-01
Chr08	irgsp1_rep	three_prime_UTR	19732603	19733253	.	+	.	Parent=Os08t0412401-01
Chr08	irgsp1_rep	mRNA	19735721	19738994	.	-	.	ID=Os08t0412500-01;Name=Os08t0412500-01;Locus_id=Os08g0412500;Note=Uncharacterised protein family UPF0041 domain containing protein.;Transcript_evidence=AK062505 (DDBJ%2C Best hit);ORF_evidence=NP_001152474.1 (RefSeq);InterPro=Uncharacterised protein family UPF0041 (IPR005336);NIAS_FLcDNA=001-104-B06;Expression=AK062505;TENOR=Os08t0412500-01;KEGG=Os08t0412500-01
Chr08	irgsp1_rep	five_prime_UTR	19738894	19738994	.	-	.	Parent=Os08t0412500-01
Chr08	irgsp1_rep	five_prime_UTR	19738738	19738777	.	-	.	Parent=Os08t0412500-01
Chr08	irgsp1_rep	CDS	19738642	19738737	.	-	0	Parent=Os08t0412500-01
Chr08	irgsp1_rep	CDS	19737632	19737686	.	-	0	Parent=Os08t0412500-01
Chr08	irgsp1_rep	CDS	19736231	19736366	.	-	2	Parent=Os08t0412500-01
Chr08	irgsp1_rep	CDS	19735865	19735901	.	-	1	Parent=Os08t0412500-01
Chr08	irgsp1_rep	three_prime_UTR	19735721	19735864	.	-	.	Parent=Os08t0412500-01
Chr08	irgsp1_rep	mRNA	19739823	19744499	.	-	.	ID=Os08t0412600-01;Name=Os08t0412600-01;Locus_id=Os08g0412600;Note=RabGAP/TBC domain containing protein.;Transcript_evidence=AK099868 (DDBJ%2C Best hit);ORF_evidence=B6T9I2 (UniProt);GO=Biological Process: regulation of Rab GTPase activity (GO:0032313),Cellular Component: intracellular (GO:0005622),Molecular Function: Rab GTPase activator activity (GO:0005097);InterPro=Rab-GAP/TBC domain (IPR000195);NIAS_FLcDNA=J013111E20;Expression=AK099868;TENOR=Os08t0412600-01;KEGG=Os08t0412600-01
Chr08	irgsp1_rep	five_prime_UTR	19744203	19744499	.	-	.	Parent=Os08t0412600-01
Chr08	irgsp1_rep	five_prime_UTR	19743595	19743650	.	-	.	Parent=Os08t0412600-01
Chr08	irgsp1_rep	CDS	19743446	19743594	.	-	0	Parent=Os08t0412600-01
Chr08	irgsp1_rep	CDS	19742873	19743068	.	-	1	Parent=Os08t0412600-01
Chr08	irgsp1_rep	CDS	19742530	19742700	.	-	0	Parent=Os08t0412600-01
Chr08	irgsp1_rep	CDS	19742326	19742442	.	-	0	Parent=Os08t0412600-01
Chr08	irgsp1_rep	CDS	19741687	19741908	.	-	0	Parent=Os08t0412600-01
Chr08	irgsp1_rep	three_prime_UTR	19740661	19741686	.	-	.	Parent=Os08t0412600-01
Chr08	irgsp1_rep	three_prime_UTR	19740475	19740573	.	-	.	Parent=Os08t0412600-01
Chr08	irgsp1_rep	three_prime_UTR	19739823	19740078	.	-	.	Parent=Os08t0412600-01
Chr08	irgsp1_rep	mRNA	19745573	19747063	.	+	.	ID=Os08t0412700-01;Name=Os08t0412700-01;Locus_id=Os08g0412700;Note=Protein of unknown function DUF1262 family protein.;Transcript_evidence=AK106356 (DDBJ%2C Best hit);ORF_evidence=B8BAS3 (UniProt);InterPro=Protein of unknown function DUF1262 (IPR010683);NIAS_FLcDNA=002-102-A06;Expression=AK106356;TENOR=Os08t0412700-01;KEGG=Os08t0412700-01
Chr08	irgsp1_rep	five_prime_UTR	19745573	19745574	.	+	.	Parent=Os08t0412700-01
Chr08	irgsp1_rep	CDS	19745575	19746711	.	+	0	Parent=Os08t0412700-01
Chr08	irgsp1_rep	three_prime_UTR	19746712	19747063	.	+	.	Parent=Os08t0412700-01
Chr08	irgsp1_rep	mRNA	19747442	19748835	.	-	.	ID=Os08t0412800-01;Name=Os08t0412800-01;Locus_id=Os08g0412800;Note=Protein of unknown function DUF1262 family protein.;Transcript_evidence=AK108716 (DDBJ%2C Best hit);ORF_evidence=A3BT34 (UniProt);InterPro=Protein of unknown function DUF1262 (IPR010683);NIAS_FLcDNA=002-150-B08;Oryzabase=20475;Expression=AK108716;TENOR=Os08t0412800-01;KEGG=Os08t0412800-01
Chr08	irgsp1_rep	five_prime_UTR	19748835	19748835	.	-	.	Parent=Os08t0412800-01
Chr08	irgsp1_rep	CDS	19747677	19748834	.	-	0	Parent=Os08t0412800-01
Chr08	irgsp1_rep	three_prime_UTR	19747442	19747676	.	-	.	Parent=Os08t0412800-01
Chr08	irgsp1_rep	mRNA	19756801	19760802	.	-	.	ID=Os08t0413000-01;Name=Os08t0413000-01;Locus_id=Os08g0413000;RAP-DB Gene Symbol Synonym(s)=OsSTL2;RAP-DB Gene Name Synonym(s)=salt tolerance level 2;CGSNL Gene Symbol=STL2;CGSNL Gene Name=SALT TOLERANCE LEVEL 2;Oryzabase Gene Symbol Synonym(s)=OsSTL2;Oryzabase Gene Name Synonym(s)=salt tolerance level 2;Note=Putative cell division cycle protein%2C Salt tolerance;Transcript_evidence=Inferred from literature;ORF_evidence=Q6Z562;GO=Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity (GO:0016787);InterPro=Aspartate decarboxylase-like domain superfamily (IPR009010),CDC48 domain 2-like superfamily (IPR029067),P-loop containing nucleoside triphosphate hydrolase (IPR027417),AAA ATPase%2C CDC48 family (IPR005938),CDC48%2C N-terminal subdomain (IPR003338),CDC48%2C domain 2 (IPR004201),AAA+ ATPase domain (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),AAA ATPase%2C AAA+ lid domain (IPR041569),ATPase%2C AAA-type%2C conserved site (IPR003960);Manual Curation=July 8%2C 2020;Literature_PMID=32561778;Oryzabase=23715;TENOR=Os08t0413000-00;KEGG=Os08t0413000-00
Chr08	irgsp1_rep	CDS	19760364	19760802	.	-	0	Parent=Os08t0413000-01
Chr08	irgsp1_rep	CDS	19757076	19759183	.	-	2	Parent=Os08t0413000-01
Chr08	irgsp1_rep	three_prime_UTR	19756801	19757075	.	-	.	Parent=Os08t0413000-01
Chr08	irgsp1_rep	mRNA	19757472	19760753	.	+	.	ID=Os08t0413050-00;Name=Os08t0413050-00;Locus_id=Os08g0413050;Note=Hypothetical protein.;Transcript_evidence=AK373447 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0413050-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	19757472	19759178	.	+	0	Parent=Os08t0413050-00
Chr08	irgsp1_rep	CDS	19760355	19760369	.	+	0	Parent=Os08t0413050-00
Chr08	irgsp1_rep	three_prime_UTR	19760370	19760753	.	+	.	Parent=Os08t0413050-00
Chr08	irgsp1_rep	mRNA	19762998	19764245	.	-	.	ID=Os08t0413100-00;Name=Os08t0413100-00;Locus_id=Os08g0413100;Note=Protein of unknown function DUF1262 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6Z561 (UniProt);InterPro=Protein of unknown function DUF1262 (IPR010683);TENOR=Os08t0413100-00
Chr08	irgsp1_rep	CDS	19762998	19764245	.	-	0	Parent=Os08t0413100-00
Chr08	irgsp1_rep	mRNA	19766166	19767472	.	-	.	ID=Os08t0413200-00;Name=Os08t0413200-00;Locus_id=Os08g0413200;Note=Protein of unknown function DUF1262 domain containing protein.;Transcript_evidence=AK362837 (DDBJ);ORF_evidence=Q6Z560 (UniProt);InterPro=Protein of unknown function DUF1262 (IPR010683);TENOR=Os08t0413200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	19767432	19767472	.	-	.	Parent=Os08t0413200-00
Chr08	irgsp1_rep	CDS	19766166	19767431	.	-	0	Parent=Os08t0413200-00
Chr08	irgsp1_rep	mRNA	19775406	19776629	.	-	.	ID=Os08t0413500-00;Name=Os08t0413500-00;Locus_id=Os08g0413500;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6Z557 (UniProt);InterPro=Protein of unknown function DUF1262 (IPR010683);TENOR=Os08t0413500-00;KEGG=Os08t0413500-00
Chr08	irgsp1_rep	CDS	19775406	19776629	.	-	0	Parent=Os08t0413500-00
Chr08	irgsp1_rep	mRNA	19777632	19779296	.	-	.	ID=Os08t0413850-01;Name=Os08t0413850-01;Locus_id=Os08g0413850;Note=Protein of unknown function DUF1262 domain containing protein.;Transcript_evidence=AK241930 (DDBJ%2C Best hit);ORF_evidence=NP_001061800.2 (RefSeq);NIAS_FLcDNA=J075079O20;TENOR=Os08t0413850-01;KEGG=Os08t0413850-01
Chr08	irgsp1_rep	five_prime_UTR	19779161	19779296	.	-	.	Parent=Os08t0413850-01
Chr08	irgsp1_rep	five_prime_UTR	19778765	19778924	.	-	.	Parent=Os08t0413850-01
Chr08	irgsp1_rep	five_prime_UTR	19778074	19778613	.	-	.	Parent=Os08t0413850-01
Chr08	irgsp1_rep	CDS	19777675	19778073	.	-	0	Parent=Os08t0413850-01
Chr08	irgsp1_rep	three_prime_UTR	19777632	19777674	.	-	.	Parent=Os08t0413850-01
Chr08	irgsp1_rep	mRNA	19787547	19790341	.	-	.	ID=Os08t0414000-00;Name=Os08t0414000-00;Locus_id=Os08g0414000;Note=Protein of unknown function DUF1262 domain containing protein.;Transcript_evidence=FP098544 (DDBJ);ORF_evidence=Q6Z557 (UniProt);InterPro=Protein of unknown function DUF1262 (IPR010683);TENOR=Os08t0414000-00
Chr08	irgsp1_rep	five_prime_UTR	19790341	19790341	.	-	.	Parent=Os08t0414000-00
Chr08	irgsp1_rep	CDS	19790066	19790340	.	-	0	Parent=Os08t0414000-00
Chr08	irgsp1_rep	CDS	19787954	19788188	.	-	1	Parent=Os08t0414000-00
Chr08	irgsp1_rep	three_prime_UTR	19787547	19787953	.	-	.	Parent=Os08t0414000-00
Chr08	irgsp1_rep	mRNA	19796449	19801162	.	+	.	ID=Os08t0414200-01;Name=Os08t0414200-01;Locus_id=Os08g0414200;Oryzabase Gene Symbol Synonym(s)=OsRFP;Oryzabase Gene Name Synonym(s)=RING finger protein;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK102789 (DDBJ%2C Best hit);ORF_evidence=NP_001148993.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=BRCT (IPR001357),Zinc finger%2C RING-type (IPR001841),Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957),Zinc finger%2C PHD-type%2C conserved site (IPR019786);NIAS_FLcDNA=J033107O17;Oryzabase=21036;Expression=AK102789;TENOR=Os08t0414200-01;KEGG=Os08t0414200-01
Chr08	irgsp1_rep	five_prime_UTR	19796449	19796646	.	+	.	Parent=Os08t0414200-01
Chr08	irgsp1_rep	CDS	19796647	19796787	.	+	0	Parent=Os08t0414200-01
Chr08	irgsp1_rep	CDS	19796887	19797020	.	+	0	Parent=Os08t0414200-01
Chr08	irgsp1_rep	CDS	19797513	19797717	.	+	1	Parent=Os08t0414200-01
Chr08	irgsp1_rep	CDS	19798474	19798608	.	+	0	Parent=Os08t0414200-01
Chr08	irgsp1_rep	CDS	19799358	19799987	.	+	0	Parent=Os08t0414200-01
Chr08	irgsp1_rep	CDS	19800421	19800597	.	+	0	Parent=Os08t0414200-01
Chr08	irgsp1_rep	CDS	19800698	19800871	.	+	0	Parent=Os08t0414200-01
Chr08	irgsp1_rep	three_prime_UTR	19800872	19801162	.	+	.	Parent=Os08t0414200-01
Chr08	irgsp1_rep	mRNA	19804132	19808750	.	+	.	ID=Os08t0414300-01;Name=Os08t0414300-01;Locus_id=Os08g0414300;Note=Conserved hypothetical protein.;Transcript_evidence=AK072217 (DDBJ%2C Best hit);ORF_evidence=B8BAS4 (UniProt);NIAS_FLcDNA=J013159I12;Expression=AK072217;TENOR=Os08t0414300-01;KEGG=Os08t0414300-01
Chr08	irgsp1_rep	five_prime_UTR	19804132	19804886	.	+	.	Parent=Os08t0414300-01
Chr08	irgsp1_rep	CDS	19804887	19805358	.	+	0	Parent=Os08t0414300-01
Chr08	irgsp1_rep	CDS	19808285	19808331	.	+	2	Parent=Os08t0414300-01
Chr08	irgsp1_rep	three_prime_UTR	19808332	19808750	.	+	.	Parent=Os08t0414300-01
Chr08	irgsp1_rep	mRNA	19806578	19808743	.	+	.	ID=Os08t0414300-02;Name=Os08t0414300-02;Locus_id=Os08g0414300;Note=Non-protein coding transcript.;Transcript_evidence=AK066387 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013067G06;TENOR=Os08t0414300-02
Chr08	irgsp1_rep	exon	19806578	19808743	.	+	.	Parent=Os08t0414300-02
Chr08	irgsp1_rep	mRNA	19814567	19815027	.	-	.	ID=Os08t0414500-00;Name=Os08t0414500-00;Locus_id=Os08g0414500;Oryzabase Gene Symbol Synonym(s)=OsbHLH177%2C bHLH177;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 177;Note=Hypothetical conserved gene.;Transcript_evidence=CT835941 (DDBJ%2C Best hit);ORF_evidence=NP_001061803.2 (RefSeq);Oryzabase=22848;TENOR=Os08t0414500-00
Chr08	irgsp1_rep	five_prime_UTR	19814817	19815027	.	-	.	Parent=Os08t0414500-00
Chr08	irgsp1_rep	CDS	19814567	19814816	.	-	0	Parent=Os08t0414500-00
Chr08	irgsp1_rep	mRNA	19826775	19829667	.	+	.	ID=Os08t0414600-01;Name=Os08t0414600-01;Locus_id=Os08g0414600;Note=Six-bladed beta-propeller%2C TolB-like domain containing protein.;Transcript_evidence=AK101579 (DDBJ%2C Best hit),AK101578 (DDBJ%2C Best hit);ORF_evidence=B9G0W6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=NHL repeat (IPR001258),Six-bladed beta-propeller%2C TolB-like (IPR011042);NIAS_FLcDNA=J033050N09,J033050N07;Expression=AK101579;TENOR=Os08t0414600-01;KEGG=Os08t0414600-01
Chr08	irgsp1_rep	five_prime_UTR	19826775	19826876	.	+	.	Parent=Os08t0414600-01
Chr08	irgsp1_rep	CDS	19826877	19827297	.	+	0	Parent=Os08t0414600-01
Chr08	irgsp1_rep	CDS	19827816	19828016	.	+	2	Parent=Os08t0414600-01
Chr08	irgsp1_rep	CDS	19828669	19828763	.	+	2	Parent=Os08t0414600-01
Chr08	irgsp1_rep	CDS	19828845	19828955	.	+	0	Parent=Os08t0414600-01
Chr08	irgsp1_rep	three_prime_UTR	19828956	19829667	.	+	.	Parent=Os08t0414600-01
Chr08	irgsp1_rep	mRNA	19830425	19836080	.	-	.	ID=Os08t0414700-01;Name=Os08t0414700-01;Locus_id=Os08g0414700;Note=Similar to Trehalose-6-phosphate synthase (Fragment).;Transcript_evidence=AK099398 (DDBJ%2C Best hit);ORF_evidence=B6SH67 (UniProt);GO=Biological Process: trehalose biosynthetic process (GO:0005992),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Glycosyl transferase%2C family 20 (IPR001830),Trehalose-phosphatase (IPR003337),HAD-superfamily hydrolase%2C subfamily IIB (IPR006379),HAD-like domain (IPR023214);NIAS_FLcDNA=J013000O13;Expression=AK099398;TENOR=Os08t0414700-01;KEGG=Os08t0414700-01
Chr08	irgsp1_rep	five_prime_UTR	19835884	19836080	.	-	.	Parent=Os08t0414700-01
Chr08	irgsp1_rep	five_prime_UTR	19833534	19833626	.	-	.	Parent=Os08t0414700-01
Chr08	irgsp1_rep	CDS	19831552	19833533	.	-	0	Parent=Os08t0414700-01
Chr08	irgsp1_rep	CDS	19831153	19831426	.	-	1	Parent=Os08t0414700-01
Chr08	irgsp1_rep	CDS	19830731	19831063	.	-	0	Parent=Os08t0414700-01
Chr08	irgsp1_rep	three_prime_UTR	19830425	19830730	.	-	.	Parent=Os08t0414700-01
Chr08	irgsp1_rep	mRNA	19843567	19844028	.	+	.	ID=Os08t0414900-00;Name=Os08t0414900-00;Locus_id=Os08g0414900;Note=Hypothetical gene.;Transcript_evidence=AK063606 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;Expression=AK063606;TENOR=Os08t0414900-00;KEGG=Os08t0414900-00
Chr08	irgsp1_rep	five_prime_UTR	19843567	19843568	.	+	.	Parent=Os08t0414900-00
Chr08	irgsp1_rep	CDS	19843569	19843922	.	+	0	Parent=Os08t0414900-00
Chr08	irgsp1_rep	three_prime_UTR	19843923	19844028	.	+	.	Parent=Os08t0414900-00
Chr08	irgsp1_rep	mRNA	19854315	19854635	.	-	.	ID=Os08t0415400-00;Name=Os08t0415400-00;Locus_id=Os08g0415400;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001175578.1 (RefSeq);TENOR=Os08t0415400-00;KEGG=Os08t0415400-00
Chr08	irgsp1_rep	CDS	19854315	19854635	.	-	0	Parent=Os08t0415400-00
Chr08	irgsp1_rep	mRNA	19875348	19881382	.	+	.	ID=Os08t0415600-00;Name=Os08t0415600-00;Locus_id=Os08g0415600;Oryzabase Gene Symbol Synonym(s)=OsPUB5;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 5%2C U-box protein 5;Note=Similar to ubiquitin-protein ligase.;Transcript_evidence=BT033531 (DDBJ);ORF_evidence=NP_001147953.1 (RefSeq);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),U box domain (IPR003613),Armadillo-like helical (IPR011989),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Armadillo-type fold (IPR016024);Oryzabase=17798;TENOR=Os08t0415600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	19875348	19877237	.	+	0	Parent=Os08t0415600-00
Chr08	irgsp1_rep	CDS	19881119	19881382	.	+	0	Parent=Os08t0415600-00
Chr08	irgsp1_rep	mRNA	19881334	19881981	.	-	.	ID=Os08t0415900-00;Name=Os08t0415900-00;Locus_id=Os08g0415900;Note=Similar to Amino acid permease AAP4.;Transcript_evidence=BT042598 (DDBJ);ORF_evidence=Q93X13 (UniProt);InterPro=Amino acid transporter%2C transmembrane (IPR013057);TENOR=Os08t0415900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	19881463	19881981	.	-	0	Parent=Os08t0415900-00
Chr08	irgsp1_rep	three_prime_UTR	19881334	19881462	.	-	.	Parent=Os08t0415900-00
Chr08	irgsp1_rep	mRNA	19884020	19888355	.	-	.	ID=Os08t0416000-01;Name=Os08t0416000-01;Locus_id=Os08g0416000;CGSNL Gene Symbol=HOX5;CGSNL Gene Name=HOMEOBOX GENE 5;Oryzabase Gene Symbol Synonym(s)=Oshox5%2C OsHox5%2C EIP9;Oryzabase Gene Name Synonym(s)=rice homeobox gene 5%2C Homeobox-leucine zipper protein HOX5%2C Homeodomain transcription factor HOX5%2C HD-ZIP protein HOX5%2C EBR1-interacting protein 9;Note=Homeodomain leucine zipper protein.;Transcript_evidence=AK100634 (DDBJ%2C Best hit),AK101569 (DDBJ%2C Best hit);ORF_evidence=Q6ZA74 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: transcription regulatory region sequence-specific DNA binding (GO:0000976),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Helix-turn-helix motif%2C lambda-like repressor (IPR000047),Homeobox (IPR001356),Leucine zipper%2C homeobox-associated (IPR003106),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Homeobox%2C conserved site (IPR017970);NIAS_FLcDNA=J023110A12,J033050G15;Oryzabase=6156;TENOR=Os08t0416000-01
Chr08	irgsp1_rep	five_prime_UTR	19887864	19888355	.	-	.	Parent=Os08t0416000-01
Chr08	irgsp1_rep	CDS	19887746	19887863	.	-	0	Parent=Os08t0416000-01
Chr08	irgsp1_rep	CDS	19887274	19887677	.	-	2	Parent=Os08t0416000-01
Chr08	irgsp1_rep	CDS	19884332	19884859	.	-	0	Parent=Os08t0416000-01
Chr08	irgsp1_rep	three_prime_UTR	19884020	19884331	.	-	.	Parent=Os08t0416000-01
Chr08	irgsp1_rep	mRNA	19886628	19887898	.	-	.	ID=Os08t0416000-02;Name=Os08t0416000-02;Locus_id=Os08g0416000;CGSNL Gene Symbol=HOX5;CGSNL Gene Name=HOMEOBOX GENE 5;Oryzabase Gene Symbol Synonym(s)=Oshox5%2C OsHox5%2C EIP9;Oryzabase Gene Name Synonym(s)=rice homeobox gene 5%2C Homeobox-leucine zipper protein HOX5%2C Homeodomain transcription factor HOX5%2C HD-ZIP protein HOX5%2C EBR1-interacting protein 9;Note=Similar to Homeobox-leucine zipper protein HOX5.;Transcript_evidence=AK110561 (DDBJ%2C Best hit);ORF_evidence=Q6ZA74 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: transcription regulatory region sequence-specific DNA binding (GO:0000976),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Helix-turn-helix motif%2C lambda-like repressor (IPR000047),Homeobox (IPR001356),Leucine zipper%2C homeobox-associated (IPR003106),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Homeobox%2C conserved site (IPR017970);NIAS_FLcDNA=002-168-C12;Oryzabase=6156;TENOR=Os08t0416000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	19887727	19887898	.	-	.	Parent=Os08t0416000-02
Chr08	irgsp1_rep	CDS	19887262	19887726	.	-	0	Parent=Os08t0416000-02
Chr08	irgsp1_rep	three_prime_UTR	19886628	19887261	.	-	.	Parent=Os08t0416000-02
Chr08	irgsp1_rep	mRNA	19888058	19892156	.	+	.	ID=Os08t0416033-00;Name=Os08t0416033-00;Locus_id=Os08g0416033;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os08t0416033-00
Chr08	irgsp1_rep	CDS	19888058	19888160	.	+	0	Parent=Os08t0416033-00
Chr08	irgsp1_rep	CDS	19891897	19892156	.	+	2	Parent=Os08t0416033-00
Chr08	irgsp1_rep	mRNA	19892662	19892851	.	+	.	ID=Os08t0416066-00;Name=Os08t0416066-00;Locus_id=Os08g0416066;Note=Non-protein coding transcript.;Transcript_evidence=EF197824 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0416066-00
Chr08	irgsp1_rep	exon	19892662	19892851	.	+	.	Parent=Os08t0416066-00
Chr08	irgsp1_rep	mRNA	19898592	19907743	.	-	.	ID=Os08t0416100-01;Name=Os08t0416100-01;Locus_id=Os08g0416100;Oryzabase Gene Symbol Synonym(s)=OS-RNAH%2C OsRH29;Oryzabase Gene Name Synonym(s)=RNA helicase%2C RNA helicase 29;Note=DEAD-like helicase%2C N-terminal domain containing protein.;Transcript_evidence=AK070406 (DDBJ%2C Best hit);ORF_evidence=A2YV85 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides (GO:0016818);InterPro=Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DBP10CT (IPR012541),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=J023054K02;Oryzabase=15167;Expression=AK070406;TENOR=Os08t0416100-01;KEGG=Os08t0416100-01
Chr08	irgsp1_rep	five_prime_UTR	19907582	19907743	.	-	.	Parent=Os08t0416100-01
Chr08	irgsp1_rep	CDS	19907143	19907581	.	-	0	Parent=Os08t0416100-01
Chr08	irgsp1_rep	CDS	19905368	19906529	.	-	2	Parent=Os08t0416100-01
Chr08	irgsp1_rep	CDS	19905230	19905272	.	-	1	Parent=Os08t0416100-01
Chr08	irgsp1_rep	CDS	19904907	19905008	.	-	0	Parent=Os08t0416100-01
Chr08	irgsp1_rep	CDS	19903475	19903514	.	-	0	Parent=Os08t0416100-01
Chr08	irgsp1_rep	CDS	19903230	19903306	.	-	2	Parent=Os08t0416100-01
Chr08	irgsp1_rep	CDS	19903042	19903094	.	-	0	Parent=Os08t0416100-01
Chr08	irgsp1_rep	CDS	19902294	19902375	.	-	1	Parent=Os08t0416100-01
Chr08	irgsp1_rep	CDS	19902165	19902215	.	-	0	Parent=Os08t0416100-01
Chr08	irgsp1_rep	CDS	19900150	19900285	.	-	0	Parent=Os08t0416100-01
Chr08	irgsp1_rep	CDS	19898788	19899158	.	-	2	Parent=Os08t0416100-01
Chr08	irgsp1_rep	three_prime_UTR	19898592	19898787	.	-	.	Parent=Os08t0416100-01
Chr08	irgsp1_rep	mRNA	19909344	19909848	.	+	.	ID=Os08t0416250-01;Name=Os08t0416250-01;Locus_id=Os08g0416250;Note=Non-protein coding transcript.;Transcript_evidence=AK242241 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J075179K03;TENOR=Os08t0416250-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	exon	19909344	19909848	.	+	.	Parent=Os08t0416250-01
Chr08	irgsp1_rep	mRNA	19915166	19918776	.	-	.	ID=Os08t0416400-01;Name=Os08t0416400-01;Locus_id=Os08g0416400;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK064144 (DDBJ%2C Best hit);ORF_evidence=Q6ZA70 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=002-103-C02;TENOR=Os08t0416400-01
Chr08	irgsp1_rep	five_prime_UTR	19918721	19918776	.	-	.	Parent=Os08t0416400-01
Chr08	irgsp1_rep	CDS	19918264	19918720	.	-	0	Parent=Os08t0416400-01
Chr08	irgsp1_rep	CDS	19916968	19917221	.	-	2	Parent=Os08t0416400-01
Chr08	irgsp1_rep	CDS	19916710	19916862	.	-	0	Parent=Os08t0416400-01
Chr08	irgsp1_rep	CDS	19915504	19915894	.	-	0	Parent=Os08t0416400-01
Chr08	irgsp1_rep	CDS	19915166	19915421	.	-	2	Parent=Os08t0416400-01
Chr08	irgsp1_rep	mRNA	19913134	19915226	.	-	.	ID=Os08t0416400-02;Name=Os08t0416400-02;Locus_id=Os08g0416400;Note=Similar to RNA binding motif protein.;Transcript_evidence=AK105675 (DDBJ%2C Best hit);ORF_evidence=E5GBJ9 (UniProt);GO=Biological Process: mRNA processing (GO:0006397);InterPro=Splicing factor PWI (IPR002483);NIAS_FLcDNA=001-201-A11;TENOR=Os08t0416400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	19915093	19915226	.	-	.	Parent=Os08t0416400-02
Chr08	irgsp1_rep	CDS	19914747	19915092	.	-	0	Parent=Os08t0416400-02
Chr08	irgsp1_rep	CDS	19914086	19914663	.	-	2	Parent=Os08t0416400-02
Chr08	irgsp1_rep	CDS	19913342	19913593	.	-	0	Parent=Os08t0416400-02
Chr08	irgsp1_rep	three_prime_UTR	19913134	19913341	.	-	.	Parent=Os08t0416400-02
Chr08	irgsp1_rep	mRNA	19928662	19929233	.	+	.	ID=Os08t0416800-01;Name=Os08t0416800-01;Locus_id=Os08g0416800;Note=Conserved hypothetical protein.;Transcript_evidence=AK062915 (DDBJ%2C Best hit);ORF_evidence=A3BT55 (UniProt);NIAS_FLcDNA=001-108-H01;TENOR=Os08t0416800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	19928662	19928663	.	+	.	Parent=Os08t0416800-01
Chr08	irgsp1_rep	CDS	19928664	19928732	.	+	0	Parent=Os08t0416800-01
Chr08	irgsp1_rep	CDS	19928828	19929076	.	+	0	Parent=Os08t0416800-01
Chr08	irgsp1_rep	three_prime_UTR	19929077	19929233	.	+	.	Parent=Os08t0416800-01
Chr08	irgsp1_rep	mRNA	19937095	19940521	.	+	.	ID=Os08t0416900-01;Name=Os08t0416900-01;Locus_id=Os08g0416900;RAP-DB Gene Symbol Synonym(s)=OsV<sub>5B</sub>;RAP-DB Gene Name Synonym(s)=VIRESCENT 5B%2C Young Leaf Chlorosis 1-like gene%2C YLC1-like gene;CGSNL Gene Symbol=V5B;CGSNL Gene Name=VIRESCENT 5B;Oryzabase Gene Symbol Synonym(s)=OsV5B;Oryzabase Gene Name Synonym(s)=Young Leaf Chlorosis 1-like gene%2C YCL1-like gene;Note=Chaperone-like protein of protochlorophyllide oxidoreductase (POR)%2C J-like protein%2C Regulation of chlorophyll biosynthesis;Transcript_evidence=AK287885;ORF_evidence=A0A0P0XFT1;InterPro=Protein CHAPERONE-LIKE PROTEIN OF POR1-like (IPR021788),DnaJ domain (IPR001623);NIAS_FLcDNA=J065207M01;Manual Curation=November 10%2C 2016;Literature_PMID=27565208,23053539;Oryzabase=18438;TENOR=Os08t0416900-01;KEGG=Os08t0416900-01
Chr08	irgsp1_rep	five_prime_UTR	19937095	19937172	.	+	.	Parent=Os08t0416900-01
Chr08	irgsp1_rep	CDS	19937173	19937246	.	+	0	Parent=Os08t0416900-01
Chr08	irgsp1_rep	CDS	19937357	19937463	.	+	1	Parent=Os08t0416900-01
Chr08	irgsp1_rep	CDS	19938845	19939227	.	+	2	Parent=Os08t0416900-01
Chr08	irgsp1_rep	CDS	19939547	19939623	.	+	0	Parent=Os08t0416900-01
Chr08	irgsp1_rep	CDS	19939703	19939853	.	+	1	Parent=Os08t0416900-01
Chr08	irgsp1_rep	three_prime_UTR	19939854	19940521	.	+	.	Parent=Os08t0416900-01
Chr08	irgsp1_rep	mRNA	19950692	19952388	.	-	.	ID=Os08t0417000-01;Name=Os08t0417000-01;Locus_id=Os08g0417000;Note=2OG-Fe(II) oxygenase domain containing protein.;Transcript_evidence=AK068735 (DDBJ%2C Best hit),AK104072 (DDBJ%2C Best hit);ORF_evidence=B7F9Y2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=J013158D09,001-027-C10;Expression=AK068735;TENOR=Os08t0417000-01;KEGG=Os08t0417000-01
Chr08	irgsp1_rep	five_prime_UTR	19952305	19952388	.	-	.	Parent=Os08t0417000-01
Chr08	irgsp1_rep	CDS	19951952	19952304	.	-	0	Parent=Os08t0417000-01
Chr08	irgsp1_rep	CDS	19951537	19951861	.	-	1	Parent=Os08t0417000-01
Chr08	irgsp1_rep	CDS	19950879	19951136	.	-	0	Parent=Os08t0417000-01
Chr08	irgsp1_rep	three_prime_UTR	19950692	19950878	.	-	.	Parent=Os08t0417000-01
Chr08	irgsp1_rep	mRNA	19954825	19956227	.	-	.	ID=Os08t0417100-01;Name=Os08t0417100-01;Locus_id=Os08g0417100;CGSNL Gene Symbol=2ODD34;CGSNL Gene Name=2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 34;Oryzabase Gene Symbol Synonym(s)=2-ODD34%2C Os2-ODD34%2C Os2ODD34;Oryzabase Gene Name Synonym(s)=2-oxoglutarate-dependent dioxygenase 34;Note=Similar to cDNA%2C clone: J100014C05%2C full insert sequence.;Transcript_evidence=AK243059 (DDBJ%2C Best hit),AK289247 (DDBJ%2C Best hit);ORF_evidence=NP_001152555.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=J100014C05,J100078I23;Oryzabase=22633;TENOR=Os08t0417100-01;KEGG=Os08t0417100-01
Chr08	irgsp1_rep	five_prime_UTR	19956167	19956227	.	-	.	Parent=Os08t0417100-01
Chr08	irgsp1_rep	CDS	19955808	19956166	.	-	0	Parent=Os08t0417100-01
Chr08	irgsp1_rep	CDS	19955362	19955686	.	-	1	Parent=Os08t0417100-01
Chr08	irgsp1_rep	CDS	19955010	19955270	.	-	0	Parent=Os08t0417100-01
Chr08	irgsp1_rep	three_prime_UTR	19954825	19955009	.	-	.	Parent=Os08t0417100-01
Chr08	irgsp1_rep	mRNA	20021117	20022817	.	+	.	ID=Os08t0418600-01;Name=Os08t0418600-01;Locus_id=Os08g0418600;Note=Conserved hypothetical protein.;Transcript_evidence=AK108371 (DDBJ%2C Best hit);ORF_evidence=A2YV99 (UniProt);NIAS_FLcDNA=002-142-D08;Expression=AK108371;TENOR=Os08t0418600-01;KEGG=Os08t0418600-01
Chr08	irgsp1_rep	five_prime_UTR	20021117	20021215	.	+	.	Parent=Os08t0418600-01
Chr08	irgsp1_rep	CDS	20021216	20021539	.	+	0	Parent=Os08t0418600-01
Chr08	irgsp1_rep	CDS	20021632	20021895	.	+	0	Parent=Os08t0418600-01
Chr08	irgsp1_rep	three_prime_UTR	20021896	20021938	.	+	.	Parent=Os08t0418600-01
Chr08	irgsp1_rep	three_prime_UTR	20022683	20022817	.	+	.	Parent=Os08t0418600-01
Chr08	irgsp1_rep	mRNA	20032118	20033171	.	+	.	ID=Os08t0419000-01;Name=Os08t0419000-01;Locus_id=Os08g0419000;Note=Conserved hypothetical protein.;Transcript_evidence=AK242238 (DDBJ%2C Best hit);ORF_evidence=NP_001175580.1 (RefSeq);NIAS_FLcDNA=J075178M12;TENOR=Os08t0419000-01;KEGG=Os08t0419000-01
Chr08	irgsp1_rep	five_prime_UTR	20032118	20032180	.	+	.	Parent=Os08t0419000-01
Chr08	irgsp1_rep	CDS	20032181	20032432	.	+	0	Parent=Os08t0419000-01
Chr08	irgsp1_rep	CDS	20032539	20032916	.	+	0	Parent=Os08t0419000-01
Chr08	irgsp1_rep	three_prime_UTR	20032917	20033171	.	+	.	Parent=Os08t0419000-01
Chr08	irgsp1_rep	mRNA	20038821	20041204	.	+	.	ID=Os08t0419100-01;Name=Os08t0419100-01;Locus_id=Os08g0419100;Note=Conserved hypothetical protein.;Transcript_evidence=AK106423 (DDBJ%2C Best hit);ORF_evidence=B9G0X5 (UniProt);NIAS_FLcDNA=002-103-B06;Expression=AK106423;TENOR=Os08t0419100-01;KEGG=Os08t0419100-01
Chr08	irgsp1_rep	five_prime_UTR	20038821	20038901	.	+	.	Parent=Os08t0419100-01
Chr08	irgsp1_rep	CDS	20038902	20039198	.	+	0	Parent=Os08t0419100-01
Chr08	irgsp1_rep	CDS	20039335	20039753	.	+	0	Parent=Os08t0419100-01
Chr08	irgsp1_rep	CDS	20040953	20040977	.	+	1	Parent=Os08t0419100-01
Chr08	irgsp1_rep	three_prime_UTR	20040978	20041204	.	+	.	Parent=Os08t0419100-01
Chr08	irgsp1_rep	mRNA	20046952	20047128	.	+	.	ID=Os08t0419200-00;Name=Os08t0419200-00;Locus_id=Os08g0419200;Note=Non-protein coding transcript.;Transcript_evidence=EU975431 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0419200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	exon	20046952	20047128	.	+	.	Parent=Os08t0419200-00
Chr08	irgsp1_rep	mRNA	20073301	20076746	.	+	.	ID=Os08t0419600-01;Name=Os08t0419600-01;Locus_id=Os08g0419600;Note=Conserved hypothetical protein.;Transcript_evidence=AK288294 (DDBJ%2C Best hit);ORF_evidence=Q7EYC0 (UniProt);NIAS_FLcDNA=J090019I03;TENOR=Os08t0419600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	20073301	20073380	.	+	.	Parent=Os08t0419600-01
Chr08	irgsp1_rep	CDS	20073381	20073824	.	+	0	Parent=Os08t0419600-01
Chr08	irgsp1_rep	three_prime_UTR	20073825	20076746	.	+	.	Parent=Os08t0419600-01
Chr08	irgsp1_rep	mRNA	20129906	20133667	.	+	.	ID=Os08t0420600-01;Name=Os08t0420600-01;Locus_id=Os08g0420600;Note=Similar to Permease 1.;Transcript_evidence=AK073563 (DDBJ%2C Best hit);ORF_evidence=B4FW56 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Xanthine/uracil/vitamin C permease (IPR006043);NIAS_FLcDNA=J033041K18;Expression=AK073563;TENOR=Os08t0420600-01;KEGG=Os08t0420600-01
Chr08	irgsp1_rep	five_prime_UTR	20129906	20130078	.	+	.	Parent=Os08t0420600-01
Chr08	irgsp1_rep	CDS	20130079	20130190	.	+	0	Parent=Os08t0420600-01
Chr08	irgsp1_rep	CDS	20130479	20130576	.	+	2	Parent=Os08t0420600-01
Chr08	irgsp1_rep	CDS	20130761	20130937	.	+	0	Parent=Os08t0420600-01
Chr08	irgsp1_rep	CDS	20131031	20131131	.	+	0	Parent=Os08t0420600-01
Chr08	irgsp1_rep	CDS	20131290	20131365	.	+	1	Parent=Os08t0420600-01
Chr08	irgsp1_rep	CDS	20131454	20131513	.	+	0	Parent=Os08t0420600-01
Chr08	irgsp1_rep	CDS	20131603	20131787	.	+	0	Parent=Os08t0420600-01
Chr08	irgsp1_rep	CDS	20131879	20131975	.	+	1	Parent=Os08t0420600-01
Chr08	irgsp1_rep	CDS	20132058	20132144	.	+	0	Parent=Os08t0420600-01
Chr08	irgsp1_rep	CDS	20132230	20132288	.	+	0	Parent=Os08t0420600-01
Chr08	irgsp1_rep	CDS	20132398	20132489	.	+	1	Parent=Os08t0420600-01
Chr08	irgsp1_rep	CDS	20132677	20132754	.	+	2	Parent=Os08t0420600-01
Chr08	irgsp1_rep	CDS	20132858	20133018	.	+	2	Parent=Os08t0420600-01
Chr08	irgsp1_rep	CDS	20133121	20133339	.	+	0	Parent=Os08t0420600-01
Chr08	irgsp1_rep	three_prime_UTR	20133340	20133667	.	+	.	Parent=Os08t0420600-01
Chr08	irgsp1_rep	mRNA	20140852	20141173	.	-	.	ID=Os08t0420650-01;Name=Os08t0420650-01;Locus_id=Os08g0420650;Note=Non-protein coding transcript.;Transcript_evidence=AK288721 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090062N24;TENOR=Os08t0420650-01
Chr08	irgsp1_rep	exon	20140852	20141173	.	-	.	Parent=Os08t0420650-01
Chr08	irgsp1_rep	mRNA	20144271	20145545	.	+	.	ID=Os08t0420700-01;Name=Os08t0420700-01;Locus_id=Os08g0420700;Note=Conserved hypothetical protein.;Transcript_evidence=AK289161 (DDBJ%2C Best hit);ORF_evidence=NP_001061819.1 (RefSeq);NIAS_FLcDNA=J100007C24;TENOR=Os08t0420700-01;KEGG=Os08t0420700-01
Chr08	irgsp1_rep	five_prime_UTR	20144271	20144407	.	+	.	Parent=Os08t0420700-01
Chr08	irgsp1_rep	CDS	20144408	20144726	.	+	0	Parent=Os08t0420700-01
Chr08	irgsp1_rep	CDS	20144842	20144981	.	+	2	Parent=Os08t0420700-01
Chr08	irgsp1_rep	CDS	20145082	20145192	.	+	0	Parent=Os08t0420700-01
Chr08	irgsp1_rep	three_prime_UTR	20145193	20145545	.	+	.	Parent=Os08t0420700-01
Chr08	irgsp1_rep	mRNA	20149588	20150958	.	-	.	ID=Os08t0420800-01;Name=Os08t0420800-01;Locus_id=Os08g0420800;Note=Hypothetical protein.;Transcript_evidence=AK109317 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-188-G09;TENOR=Os08t0420800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	20150716	20150958	.	-	0	Parent=Os08t0420800-01
Chr08	irgsp1_rep	CDS	20150350	20150358	.	-	0	Parent=Os08t0420800-01
Chr08	irgsp1_rep	three_prime_UTR	20149588	20150349	.	-	.	Parent=Os08t0420800-01
Chr08	irgsp1_rep	mRNA	20151088	20157550	.	+	.	ID=Os08t0421000-01;Name=Os08t0421000-01;Locus_id=Os08g0421000;Note=Conserved hypothetical protein.;Transcript_evidence=AK288954 (DDBJ%2C Best hit);ORF_evidence=Q8H340 (UniProt);NIAS_FLcDNA=J090083O05;TENOR=Os08t0421000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	20151088	20151995	.	+	.	Parent=Os08t0421000-01
Chr08	irgsp1_rep	CDS	20151996	20152607	.	+	0	Parent=Os08t0421000-01
Chr08	irgsp1_rep	three_prime_UTR	20152608	20157550	.	+	.	Parent=Os08t0421000-01
Chr08	irgsp1_rep	mRNA	20155834	20161288	.	-	.	ID=Os08t0421100-00;Name=Os08t0421100-00;Locus_id=Os08g0421100;CGSNL Gene Symbol=CYCD1%3B3;CGSNL Gene Name=CYCLIN-D1-3;Oryzabase Gene Symbol Synonym(s)=CycD1%3B3%2C CycD1%3Bos%3B3%2C Orysa%3BCycD1%3B3%2C Orysa%3BCYCD1%3B3;Oryzabase Gene Name Synonym(s)=D-type cyclin 1%3B3;Note=Similar to Cyclin-D1-2.;Transcript_evidence=BT067014 (DDBJ);ORF_evidence=Q8H339 (UniProt);InterPro=Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763);Oryzabase=13323;TENOR=Os08t0421100-00;KEGG=Os08t0421100-00
Chr08	irgsp1_rep	CDS	20160797	20161288	.	-	0	Parent=Os08t0421100-00
Chr08	irgsp1_rep	CDS	20160568	20160726	.	-	0	Parent=Os08t0421100-00
Chr08	irgsp1_rep	CDS	20160265	20160351	.	-	0	Parent=Os08t0421100-00
Chr08	irgsp1_rep	CDS	20157392	20157496	.	-	0	Parent=Os08t0421100-00
Chr08	irgsp1_rep	three_prime_UTR	20157369	20157391	.	-	.	Parent=Os08t0421100-00
Chr08	irgsp1_rep	three_prime_UTR	20156664	20156838	.	-	.	Parent=Os08t0421100-00
Chr08	irgsp1_rep	three_prime_UTR	20156300	20156425	.	-	.	Parent=Os08t0421100-00
Chr08	irgsp1_rep	three_prime_UTR	20155834	20156158	.	-	.	Parent=Os08t0421100-00
Chr08	irgsp1_rep	mRNA	20164695	20165876	.	+	.	ID=Os08t0421300-00;Name=Os08t0421300-00;Locus_id=Os08g0421300;Note=Hypothetical conserved gene.;Transcript_evidence=CT835963 (DDBJ%2C Best hit);ORF_evidence=Q6ZID9 (UniProt);TENOR=Os08t0421300-00;KEGG=Os08t0421300-00
Chr08	irgsp1_rep	five_prime_UTR	20164695	20164898	.	+	.	Parent=Os08t0421300-00
Chr08	irgsp1_rep	five_prime_UTR	20165012	20165033	.	+	.	Parent=Os08t0421300-00
Chr08	irgsp1_rep	CDS	20165034	20165158	.	+	0	Parent=Os08t0421300-00
Chr08	irgsp1_rep	CDS	20165165	20165414	.	+	1	Parent=Os08t0421300-00
Chr08	irgsp1_rep	CDS	20165421	20165702	.	+	0	Parent=Os08t0421300-00
Chr08	irgsp1_rep	three_prime_UTR	20165703	20165730	.	+	.	Parent=Os08t0421300-00
Chr08	irgsp1_rep	three_prime_UTR	20165740	20165876	.	+	.	Parent=Os08t0421300-00
Chr08	irgsp1_rep	mRNA	20171328	20174536	.	+	.	ID=Os08t0421400-01;Name=Os08t0421400-01;Locus_id=Os08g0421400;Note=Hypothetical protein.;Transcript_evidence=AK099935 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013119K14;Expression=AK099935;TENOR=Os08t0421400-01;KEGG=Os08t0421400-01
Chr08	irgsp1_rep	five_prime_UTR	20171328	20171657	.	+	.	Parent=Os08t0421400-01
Chr08	irgsp1_rep	CDS	20171658	20171920	.	+	0	Parent=Os08t0421400-01
Chr08	irgsp1_rep	CDS	20172021	20172137	.	+	1	Parent=Os08t0421400-01
Chr08	irgsp1_rep	CDS	20172811	20172814	.	+	1	Parent=Os08t0421400-01
Chr08	irgsp1_rep	three_prime_UTR	20172815	20174536	.	+	.	Parent=Os08t0421400-01
Chr08	irgsp1_rep	mRNA	20172202	20172573	.	+	.	ID=Os08t0421500-01;Name=Os08t0421500-01;Locus_id=Os08g0421500;Note=Non-protein coding transcript.;Transcript_evidence=AK105100 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-100-C10;TENOR=Os08t0421500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	exon	20172202	20172573	.	+	.	Parent=Os08t0421500-01
Chr08	irgsp1_rep	mRNA	20181762	20182590	.	+	.	ID=Os08t0421600-00;Name=Os08t0421600-00;Locus_id=Os08g0421600;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);InterPro=Ribonuclease H1%2C N-terminal (IPR011320);TENOR=Os08t0421600-00
Chr08	irgsp1_rep	five_prime_UTR	20181762	20181954	.	+	.	Parent=Os08t0421600-00
Chr08	irgsp1_rep	CDS	20181955	20182590	.	+	0	Parent=Os08t0421600-00
Chr08	irgsp1_rep	mRNA	20184791	20186177	.	+	.	ID=Os08t0421700-01;Name=Os08t0421700-01;Locus_id=Os08g0421700;Note=Zinc finger%2C CCHC-type domain containing protein.;Transcript_evidence=AK107252 (DDBJ%2C Best hit);ORF_evidence=A2YVC0 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Zinc finger%2C CCHC retroviral-type (IPR013084);NIAS_FLcDNA=002-125-G04;Expression=AK107252;TENOR=Os08t0421700-01;KEGG=Os08t0421700-01
Chr08	irgsp1_rep	five_prime_UTR	20184791	20184927	.	+	.	Parent=Os08t0421700-01
Chr08	irgsp1_rep	five_prime_UTR	20185078	20185100	.	+	.	Parent=Os08t0421700-01
Chr08	irgsp1_rep	CDS	20185101	20185844	.	+	0	Parent=Os08t0421700-01
Chr08	irgsp1_rep	three_prime_UTR	20185845	20186177	.	+	.	Parent=Os08t0421700-01
Chr08	irgsp1_rep	mRNA	20186987	20192334	.	-	.	ID=Os08t0421800-01;Name=Os08t0421800-01;Locus_id=Os08g0421800;Note=Similar to Mitogen-activated protein kinase kinase kinase 1 (EC 2.7.1.-) (Arabidospsis NPK1-related protein kinase 1). Splice isoform 1S.;Transcript_evidence=AK103087 (DDBJ%2C Best hit);ORF_evidence=A0PGA1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033118I12;Expression=AK103087;TENOR=Os08t0421800-01;KEGG=Os08t0421800-01
Chr08	irgsp1_rep	five_prime_UTR	20192234	20192334	.	-	.	Parent=Os08t0421800-01
Chr08	irgsp1_rep	CDS	20191754	20192233	.	-	0	Parent=Os08t0421800-01
Chr08	irgsp1_rep	CDS	20191617	20191658	.	-	0	Parent=Os08t0421800-01
Chr08	irgsp1_rep	CDS	20191430	20191495	.	-	0	Parent=Os08t0421800-01
Chr08	irgsp1_rep	CDS	20191238	20191348	.	-	0	Parent=Os08t0421800-01
Chr08	irgsp1_rep	CDS	20191068	20191149	.	-	0	Parent=Os08t0421800-01
Chr08	irgsp1_rep	CDS	20190890	20190966	.	-	2	Parent=Os08t0421800-01
Chr08	irgsp1_rep	CDS	20190533	20190609	.	-	0	Parent=Os08t0421800-01
Chr08	irgsp1_rep	CDS	20190081	20190162	.	-	1	Parent=Os08t0421800-01
Chr08	irgsp1_rep	CDS	20189910	20190010	.	-	0	Parent=Os08t0421800-01
Chr08	irgsp1_rep	CDS	20189113	20189152	.	-	1	Parent=Os08t0421800-01
Chr08	irgsp1_rep	CDS	20188935	20188994	.	-	0	Parent=Os08t0421800-01
Chr08	irgsp1_rep	CDS	20188817	20188860	.	-	0	Parent=Os08t0421800-01
Chr08	irgsp1_rep	CDS	20188610	20188742	.	-	1	Parent=Os08t0421800-01
Chr08	irgsp1_rep	CDS	20188299	20188499	.	-	0	Parent=Os08t0421800-01
Chr08	irgsp1_rep	CDS	20187883	20188211	.	-	0	Parent=Os08t0421800-01
Chr08	irgsp1_rep	CDS	20187638	20187705	.	-	1	Parent=Os08t0421800-01
Chr08	irgsp1_rep	CDS	20187465	20187544	.	-	2	Parent=Os08t0421800-01
Chr08	irgsp1_rep	three_prime_UTR	20186987	20187464	.	-	.	Parent=Os08t0421800-01
Chr08	irgsp1_rep	mRNA	20195471	20197551	.	+	.	ID=Os08t0421825-01;Name=Os08t0421825-01;Locus_id=Os08g0421825;Note=Hypothetical gene.;Transcript_evidence=AK240942 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065042F01;TENOR=Os08t0421825-01;KEGG=Os08t0421825-01
Chr08	irgsp1_rep	five_prime_UTR	20195471	20195841	.	+	.	Parent=Os08t0421825-01
Chr08	irgsp1_rep	CDS	20195842	20196315	.	+	0	Parent=Os08t0421825-01
Chr08	irgsp1_rep	three_prime_UTR	20196316	20197551	.	+	.	Parent=Os08t0421825-01
Chr08	irgsp1_rep	mRNA	20195730	20197487	.	-	.	ID=Os08t0421850-00;Name=Os08t0421850-00;Locus_id=Os08g0421850;Oryzabase Gene Symbol Synonym(s)=OsPUB17;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 17%2C U-box protein 17;Note=Similar to ubiquitin-protein ligase.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001147466.1 (RefSeq);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),U box domain (IPR003613),Armadillo-like helical (IPR011989),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Armadillo-type fold (IPR016024);Oryzabase=17809;TENOR=Os08t0421850-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	20195730	20197487	.	-	0	Parent=Os08t0421850-00
Chr08	irgsp1_rep	mRNA	20204744	20207777	.	+	.	ID=Os08t0421900-01;Name=Os08t0421900-01;Locus_id=Os08g0421900;RAP-DB Gene Symbol Synonym(s)=OsEBL1;RAP-DB Gene Name Synonym(s)=EARLY BOLTING IN SHORT DAYS-like 1%2C EBS-like 1;CGSNL Gene Symbol=EBL1;CGSNL Gene Name=EBS-LIKE 1;Oryzabase Gene Symbol Synonym(s)=qSSR8%2C OsEBL1%2C ES43;Oryzabase Gene Name Synonym(s)=candidate gene for qSSR8%2C EARLY BOLTING IN SHORT DAYS-like 1%2C EBS-like 1;Note=Homolog of Arabidopsis EBS (EARLY BOLTING IN SHORT DAYS)%2C BAH (Bromo adjacent homology) domain-containing protein;Transcript_evidence=AK064578;ORF_evidence=Q7EYS4;GO=Molecular Function: Chromatin binding (GO:0003682);InterPro=Zinc finger%2C FYVE/PHD-type (IPR011011),Bromo adjacent homology (BAH) domain (IPR001025),Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C PHD-finger (IPR019787),Zinc finger%2C PHD-type%2C conserved site (IPR019786);NIAS_FLcDNA=002-112-E10;Manual Curation=June 12%2C 2019;Literature_PMID=30082786;Oryzabase=22540;Expression=AK064578;TENOR=Os08t0421900-01;KEGG=Os08t0421900-01
Chr08	irgsp1_rep	five_prime_UTR	20204744	20204769	.	+	.	Parent=Os08t0421900-01
Chr08	irgsp1_rep	CDS	20204770	20204842	.	+	0	Parent=Os08t0421900-01
Chr08	irgsp1_rep	CDS	20204961	20205303	.	+	2	Parent=Os08t0421900-01
Chr08	irgsp1_rep	CDS	20205435	20205503	.	+	1	Parent=Os08t0421900-01
Chr08	irgsp1_rep	CDS	20206582	20206720	.	+	1	Parent=Os08t0421900-01
Chr08	irgsp1_rep	CDS	20207618	20207644	.	+	0	Parent=Os08t0421900-01
Chr08	irgsp1_rep	three_prime_UTR	20207645	20207777	.	+	.	Parent=Os08t0421900-01
Chr08	irgsp1_rep	mRNA	20208860	20218785	.	+	.	ID=Os08t0422000-01;Name=Os08t0422000-01;Locus_id=Os08g0422000;Note=Similar to CM0545.530.nc protein (Fragment).;Transcript_evidence=AK067163 (DDBJ%2C Best hit);ORF_evidence=B0BLJ7 (UniProt);GO=Biological Process: carotenoid biosynthetic process (GO:0016117),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705);InterPro=Lycopene cyclase-type%2C FAD-binding (IPR008671);NIAS_FLcDNA=J013096B06;Expression=AK067163;TENOR=Os08t0422000-01;KEGG=Os08t0422000-01
Chr08	irgsp1_rep	five_prime_UTR	20208860	20208954	.	+	.	Parent=Os08t0422000-01
Chr08	irgsp1_rep	CDS	20208955	20209173	.	+	0	Parent=Os08t0422000-01
Chr08	irgsp1_rep	CDS	20212716	20212833	.	+	0	Parent=Os08t0422000-01
Chr08	irgsp1_rep	CDS	20213476	20213657	.	+	2	Parent=Os08t0422000-01
Chr08	irgsp1_rep	CDS	20213746	20213853	.	+	0	Parent=Os08t0422000-01
Chr08	irgsp1_rep	CDS	20213958	20214022	.	+	0	Parent=Os08t0422000-01
Chr08	irgsp1_rep	CDS	20214393	20214498	.	+	1	Parent=Os08t0422000-01
Chr08	irgsp1_rep	CDS	20214833	20214916	.	+	0	Parent=Os08t0422000-01
Chr08	irgsp1_rep	CDS	20215375	20215521	.	+	0	Parent=Os08t0422000-01
Chr08	irgsp1_rep	CDS	20215781	20215909	.	+	0	Parent=Os08t0422000-01
Chr08	irgsp1_rep	CDS	20216215	20216282	.	+	0	Parent=Os08t0422000-01
Chr08	irgsp1_rep	CDS	20216881	20216911	.	+	1	Parent=Os08t0422000-01
Chr08	irgsp1_rep	CDS	20217000	20217087	.	+	0	Parent=Os08t0422000-01
Chr08	irgsp1_rep	CDS	20217612	20217679	.	+	2	Parent=Os08t0422000-01
Chr08	irgsp1_rep	CDS	20217756	20217869	.	+	0	Parent=Os08t0422000-01
Chr08	irgsp1_rep	CDS	20217948	20217983	.	+	0	Parent=Os08t0422000-01
Chr08	irgsp1_rep	CDS	20218075	20218161	.	+	0	Parent=Os08t0422000-01
Chr08	irgsp1_rep	CDS	20218269	20218360	.	+	0	Parent=Os08t0422000-01
Chr08	irgsp1_rep	CDS	20218446	20218548	.	+	1	Parent=Os08t0422000-01
Chr08	irgsp1_rep	three_prime_UTR	20218549	20218785	.	+	.	Parent=Os08t0422000-01
Chr08	irgsp1_rep	mRNA	20213974	20218785	.	+	.	ID=Os08t0422000-02;Name=Os08t0422000-02;Locus_id=Os08g0422000;Note=Similar to CM0545.530.nc protein (Fragment).;Transcript_evidence=AK061979 (DDBJ%2C Best hit);ORF_evidence=B0BLJ7 (UniProt);NIAS_FLcDNA=001-043-A06;Expression=AK061979;TENOR=Os08t0422000-02;KEGG=Os08t0422000-02
Chr08	irgsp1_rep	five_prime_UTR	20213974	20213975	.	+	.	Parent=Os08t0422000-02
Chr08	irgsp1_rep	CDS	20213976	20214022	.	+	0	Parent=Os08t0422000-02
Chr08	irgsp1_rep	CDS	20214393	20214498	.	+	1	Parent=Os08t0422000-02
Chr08	irgsp1_rep	CDS	20214833	20214916	.	+	0	Parent=Os08t0422000-02
Chr08	irgsp1_rep	CDS	20215375	20215521	.	+	0	Parent=Os08t0422000-02
Chr08	irgsp1_rep	CDS	20215781	20215909	.	+	0	Parent=Os08t0422000-02
Chr08	irgsp1_rep	CDS	20216215	20216282	.	+	0	Parent=Os08t0422000-02
Chr08	irgsp1_rep	CDS	20216881	20216911	.	+	1	Parent=Os08t0422000-02
Chr08	irgsp1_rep	CDS	20217000	20217087	.	+	0	Parent=Os08t0422000-02
Chr08	irgsp1_rep	CDS	20217612	20217679	.	+	2	Parent=Os08t0422000-02
Chr08	irgsp1_rep	CDS	20217756	20217869	.	+	0	Parent=Os08t0422000-02
Chr08	irgsp1_rep	CDS	20217948	20217983	.	+	0	Parent=Os08t0422000-02
Chr08	irgsp1_rep	CDS	20218075	20218161	.	+	0	Parent=Os08t0422000-02
Chr08	irgsp1_rep	CDS	20218269	20218360	.	+	0	Parent=Os08t0422000-02
Chr08	irgsp1_rep	CDS	20218446	20218548	.	+	1	Parent=Os08t0422000-02
Chr08	irgsp1_rep	three_prime_UTR	20218549	20218785	.	+	.	Parent=Os08t0422000-02
Chr08	irgsp1_rep	mRNA	20219418	20220108	.	-	.	ID=Os08t0422200-00;Name=Os08t0422200-00;Locus_id=Os08g0422200;CGSNL Gene Symbol=MTP12;CGSNL Gene Name=METAL TOLERANCE PROTEIN 12;Oryzabase Gene Symbol Synonym(s)=OsMTP12;Oryzabase Gene Name Synonym(s)=metal tolerance protein 12;Note=Cation efflux protein family protein.;Transcript_evidence=AY305863 (DDBJ%2C Best hit);ORF_evidence=Q8H329 (UniProt);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: cation transmembrane transporter activity (GO:0008324);InterPro=Cation efflux protein (IPR002524);Oryzabase=13415;Expression=AY305863;TENOR=Os08t0422200-00;KEGG=Os08t0422200-00
Chr08	irgsp1_rep	CDS	20219431	20220108	.	-	0	Parent=Os08t0422200-00
Chr08	irgsp1_rep	three_prime_UTR	20219418	20219430	.	-	.	Parent=Os08t0422200-00
Chr08	irgsp1_rep	mRNA	20223783	20226539	.	+	.	ID=Os08t0422300-01;Name=Os08t0422300-01;Locus_id=Os08g0422300;Note=Conserved hypothetical protein.;Transcript_evidence=AK072624 (DDBJ%2C Best hit);ORF_evidence=NP_001049714.1 (RefSeq);NIAS_FLcDNA=J023129F07;Expression=AK072624;TENOR=Os08t0422300-01;KEGG=Os08t0422300-01
Chr08	irgsp1_rep	five_prime_UTR	20223783	20224080	.	+	.	Parent=Os08t0422300-01
Chr08	irgsp1_rep	five_prime_UTR	20225947	20225953	.	+	.	Parent=Os08t0422300-01
Chr08	irgsp1_rep	CDS	20225954	20226124	.	+	0	Parent=Os08t0422300-01
Chr08	irgsp1_rep	CDS	20226239	20226313	.	+	0	Parent=Os08t0422300-01
Chr08	irgsp1_rep	three_prime_UTR	20226314	20226539	.	+	.	Parent=Os08t0422300-01
Chr08	irgsp1_rep	mRNA	20241439	20242366	.	-	.	ID=Os08t0422401-00;Name=Os08t0422401-00;Locus_id=Os08g0422401;Note=Hypothetical gene.;Transcript_evidence=BT037710 (DDBJ);ORF_evidence=NP_001061898.1 (RefSeq);TENOR=Os08t0422401-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	20242106	20242366	.	-	0	Parent=Os08t0422401-00
Chr08	irgsp1_rep	three_prime_UTR	20241856	20242105	.	-	.	Parent=Os08t0422401-00
Chr08	irgsp1_rep	three_prime_UTR	20241439	20241533	.	-	.	Parent=Os08t0422401-00
Chr08	irgsp1_rep	mRNA	20245320	20248478	.	+	.	ID=Os08t0422500-01;Name=Os08t0422500-01;Locus_id=Os08g0422500;Note=Conserved hypothetical protein.;Transcript_evidence=AK242991 (DDBJ%2C Best hit);ORF_evidence=NP_001175585.1 (RefSeq);NIAS_FLcDNA=J090095D18;TENOR=Os08t0422500-01;KEGG=Os08t0422500-01
Chr08	irgsp1_rep	five_prime_UTR	20245320	20246700	.	+	.	Parent=Os08t0422500-01
Chr08	irgsp1_rep	CDS	20246701	20247291	.	+	0	Parent=Os08t0422500-01
Chr08	irgsp1_rep	three_prime_UTR	20247292	20248478	.	+	.	Parent=Os08t0422500-01
Chr08	irgsp1_rep	mRNA	20249213	20254594	.	-	.	ID=Os08t0422600-00;Name=Os08t0422600-00;Locus_id=Os08g0422600;Oryzabase Gene Symbol Synonym(s)=SAD1;Oryzabase Gene Name Synonym(s)=super apical dormant 1;Note=Conserved hypothetical protein.;Transcript_evidence=BT068491 (DDBJ);ORF_evidence=Q7EYR9 (UniProt);Oryzabase=18685;TENOR=Os08t0422600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	20254242	20254594	.	-	0	Parent=Os08t0422600-00
Chr08	irgsp1_rep	CDS	20251787	20251892	.	-	1	Parent=Os08t0422600-00
Chr08	irgsp1_rep	CDS	20251616	20251700	.	-	0	Parent=Os08t0422600-00
Chr08	irgsp1_rep	CDS	20250890	20250973	.	-	2	Parent=Os08t0422600-00
Chr08	irgsp1_rep	CDS	20250049	20250153	.	-	2	Parent=Os08t0422600-00
Chr08	irgsp1_rep	CDS	20249230	20249507	.	-	2	Parent=Os08t0422600-00
Chr08	irgsp1_rep	three_prime_UTR	20249213	20249229	.	-	.	Parent=Os08t0422600-00
Chr08	irgsp1_rep	mRNA	20255013	20256666	.	+	.	ID=Os08t0422800-00;Name=Os08t0422800-00;Locus_id=Os08g0422800;Note=Conserved hypothetical protein.;Transcript_evidence=CT836022 (DDBJ%2C Best hit);ORF_evidence=NP_001175587.1 (RefSeq);TENOR=Os08t0422800-00;KEGG=Os08t0422800-00
Chr08	irgsp1_rep	five_prime_UTR	20255013	20255245	.	+	.	Parent=Os08t0422800-00
Chr08	irgsp1_rep	CDS	20255246	20255545	.	+	0	Parent=Os08t0422800-00
Chr08	irgsp1_rep	three_prime_UTR	20255546	20255624	.	+	.	Parent=Os08t0422800-00
Chr08	irgsp1_rep	three_prime_UTR	20255698	20255867	.	+	.	Parent=Os08t0422800-00
Chr08	irgsp1_rep	three_prime_UTR	20256483	20256549	.	+	.	Parent=Os08t0422800-00
Chr08	irgsp1_rep	three_prime_UTR	20256624	20256666	.	+	.	Parent=Os08t0422800-00
Chr08	irgsp1_rep	mRNA	20278344	20279221	.	+	.	ID=Os08t0423400-01;Name=Os08t0423400-01;Locus_id=Os08g0423400;Note=Conserved hypothetical protein.;Transcript_evidence=AK072922 (DDBJ%2C Best hit);ORF_evidence=NP_001174656.1 (RefSeq);NIAS_FLcDNA=J023146P06;TENOR=Os08t0423400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	20278344	20278950	.	+	.	Parent=Os08t0423400-01
Chr08	irgsp1_rep	CDS	20278951	20279130	.	+	0	Parent=Os08t0423400-01
Chr08	irgsp1_rep	three_prime_UTR	20279131	20279221	.	+	.	Parent=Os08t0423400-01
Chr08	irgsp1_rep	mRNA	20283075	20285185	.	+	.	ID=Os08t0423500-00;Name=Os08t0423500-00;Locus_id=Os08g0423500;CGSNL Gene Symbol=ALPHACA3;CGSNL Gene Name=ALPHA-CARBONIC ANHYDRASE 3;Oryzabase Gene Symbol Synonym(s)=OsalphaCA3%2C alphaCA3;Oryzabase Gene Name Synonym(s)=dioscorin%2C alpha-carbonic anhydrase 3;Note=Carbonic anhydrase%2C CAH1-like domain containing protein.;Transcript_evidence=EU953011 (DDBJ);ORF_evidence=NP_001149032.1 (RefSeq);GO=Biological Process: one-carbon metabolic process (GO:0006730),Molecular Function: carbonate dehydratase activity (GO:0004089),Molecular Function: zinc ion binding (GO:0008270);InterPro=Carbonic anhydrase%2C alpha-class%2C catalytic domain (IPR001148),Twin-arginine translocation pathway%2C signal sequence (IPR006311),Carbonic anhydrase%2C alpha-class%2C conserved site (IPR018338),Carbonic anhydrase%2C alpha-class (IPR023561);Oryzabase=19105;TENOR=Os08t0423500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	20283075	20283593	.	+	0	Parent=Os08t0423500-00
Chr08	irgsp1_rep	CDS	20284211	20284381	.	+	0	Parent=Os08t0423500-00
Chr08	irgsp1_rep	CDS	20284933	20284986	.	+	0	Parent=Os08t0423500-00
Chr08	irgsp1_rep	CDS	20285089	20285175	.	+	0	Parent=Os08t0423500-00
Chr08	irgsp1_rep	three_prime_UTR	20285176	20285185	.	+	.	Parent=Os08t0423500-00
Chr08	irgsp1_rep	mRNA	20312492	20314719	.	+	.	ID=Os08t0423600-00;Name=Os08t0423600-00;Locus_id=Os08g0423600;CGSNL Gene Symbol=ALPHACA4;CGSNL Gene Name=ALPHA-CARBONIC ANHYDRASE 4;Oryzabase Gene Symbol Synonym(s)=OsalphaCA4%2C alphaCA4;Oryzabase Gene Name Synonym(s)=alpha-carbonic anhydrase 4;Note=Similar to carbonic anhydrase.;Transcript_evidence=AK368139 (DDBJ);ORF_evidence=NP_001149032.1 (RefSeq);GO=Biological Process: one-carbon metabolic process (GO:0006730),Molecular Function: carbonate dehydratase activity (GO:0004089),Molecular Function: zinc ion binding (GO:0008270);InterPro=Carbonic anhydrase%2C alpha-class%2C catalytic domain (IPR001148),Twin-arginine translocation pathway%2C signal sequence (IPR006311),Carbonic anhydrase%2C alpha-class%2C conserved site (IPR018338),Carbonic anhydrase%2C alpha-class (IPR023561);Oryzabase=21648;TENOR=Os08t0423600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	20312492	20313100	.	+	0	Parent=Os08t0423600-00
Chr08	irgsp1_rep	CDS	20313519	20313689	.	+	0	Parent=Os08t0423600-00
Chr08	irgsp1_rep	CDS	20314236	20314289	.	+	0	Parent=Os08t0423600-00
Chr08	irgsp1_rep	CDS	20314630	20314716	.	+	0	Parent=Os08t0423600-00
Chr08	irgsp1_rep	three_prime_UTR	20314717	20314719	.	+	.	Parent=Os08t0423600-00
Chr08	irgsp1_rep	mRNA	20314722	20315059	.	+	.	ID=Os08t0423850-00;Name=Os08t0423850-00;Locus_id=Os08g0423850;Note=Non-protein coding transcript.;Transcript_evidence=CT835990 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os08t0423850-00
Chr08	irgsp1_rep	exon	20314722	20314865	.	+	.	Parent=Os08t0423850-00
Chr08	irgsp1_rep	exon	20314880	20315059	.	+	.	Parent=Os08t0423850-00
Chr08	irgsp1_rep	mRNA	20351105	20352478	.	+	.	ID=Os08t0424100-00;Name=Os08t0424100-00;Locus_id=Os08g0424100;CGSNL Gene Symbol=ALPHACA5;CGSNL Gene Name=ALPHA-CARBONIC ANHYDRASE 5;Oryzabase Gene Symbol Synonym(s)=OsalphaCA5%2C alphaCA5;Oryzabase Gene Name Synonym(s)=alpha-carbonic anhydrase 5;Note=Similar to carbonic anhydrase.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001149032.1 (RefSeq);GO=Biological Process: one-carbon metabolic process (GO:0006730),Molecular Function: carbonate dehydratase activity (GO:0004089),Molecular Function: zinc ion binding (GO:0008270);InterPro=Carbonic anhydrase%2C alpha-class%2C catalytic domain (IPR001148),Carbonic anhydrase%2C alpha-class%2C conserved site (IPR018338),Carbonic anhydrase%2C alpha-class (IPR023561);Oryzabase=21649;TENOR=Os08t0424100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	20351105	20351626	.	+	0	Parent=Os08t0424100-00
Chr08	irgsp1_rep	CDS	20352169	20352339	.	+	0	Parent=Os08t0424100-00
Chr08	irgsp1_rep	CDS	20352464	20352478	.	+	0	Parent=Os08t0424100-00
Chr08	irgsp1_rep	mRNA	20359562	20363791	.	-	.	ID=Os08t0424200-01;Name=Os08t0424200-01;Locus_id=Os08g0424200;Note=Similar to Methylcrotonoyl-CoA carboxylase beta chain%2C mitochondrial precursor (EC 6.4.1.4) (3-Methylcrotonyl-CoA carboxylase 2) (MCCase beta subunit) (3-methylcrotonyl-CoA:carbon dioxide ligase beta subunit).;Transcript_evidence=AK060716 (DDBJ%2C Best hit);ORF_evidence=B6SMD3 (UniProt);GO=Molecular Function: ligase activity (GO:0016874);InterPro=Carboxyl transferase (IPR000022),Acetyl-coenzyme A carboxyltransferase%2C C-terminal (IPR011763);NIAS_FLcDNA=001-031-D11;Expression=AK060716;TENOR=Os08t0424200-01;KEGG=Os08t0424200-01 (EC:6.4.1.4)
Chr08	irgsp1_rep	CDS	20363725	20363791	.	-	0	Parent=Os08t0424200-01
Chr08	irgsp1_rep	CDS	20363272	20363504	.	-	2	Parent=Os08t0424200-01
Chr08	irgsp1_rep	CDS	20363020	20363184	.	-	0	Parent=Os08t0424200-01
Chr08	irgsp1_rep	CDS	20361995	20362069	.	-	0	Parent=Os08t0424200-01
Chr08	irgsp1_rep	CDS	20361449	20361580	.	-	0	Parent=Os08t0424200-01
Chr08	irgsp1_rep	CDS	20360167	20360223	.	-	0	Parent=Os08t0424200-01
Chr08	irgsp1_rep	CDS	20359854	20360057	.	-	0	Parent=Os08t0424200-01
Chr08	irgsp1_rep	three_prime_UTR	20359562	20359853	.	-	.	Parent=Os08t0424200-01
Chr08	irgsp1_rep	mRNA	20359597	20359857	.	-	.	ID=Os08t0424200-02;Name=Os08t0424200-02;Locus_id=Os08g0424200;Note=Non-protein coding transcript.;Transcript_evidence=AK058814 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-003-E10;TENOR=Os08t0424200-02
Chr08	irgsp1_rep	exon	20359597	20359857	.	-	.	Parent=Os08t0424200-02
Chr08	irgsp1_rep	mRNA	20379823	20385975	.	+	.	ID=Os08t0424500-01;Name=Os08t0424500-01;Locus_id=Os08g0424500;RAP-DB Gene Symbol Synonym(s)=SK2(T)(SCL%2C FGR)%2C sk2(t)(scl%2C fgr)%2C fgr%2C scl%2C BAD2%2C BADH2%2C sk2%2C OsBADH2%2C Badh2%2C badh2%2C Os2AP%2C BADH-2;RAP-DB Gene Name Synonym(s)=SCENTED KERNEL 2%2C scented kernel2%2C scented kernel 2%2C fragrance%2C betaine-aldehyde dehydrogenase 2%2C betaine aldehyde dehydrogenase 2%2C scented kernel-2%2C betaine aldehyde dehydrogenase-2;CGSNL Gene Symbol=SK2(T)(SCL%2C FGR);CGSNL Gene Name=SCENTED KERNEL 2;Oryzabase Gene Symbol Synonym(s)=sk2(t)(scl%2C fgr)%2C fgr%2C scl%2C BAD2%2C BADH2%2C sk2%2C OsBADH2%2C Badh2%2C badh2%2C Os2AP%2C BADH-2%2C OsALDH10A8%2C ALDH10A8;Oryzabase Gene Name Synonym(s)=scented kernel2%2C scented kernel 2%2C fragrance%2C betaine-aldehyde dehydrogenase 2%2C betaine aldehyde dehydrogenase 2%2C scented kernel-2%2C betaine aldehyde dehydrogenase-2%2C Aldehyde dehydrogenase 10A8;Note=Betaine aldehyde dehydrogenase%2C Rice fragrance;Transcript_evidence=AK071221 (Genbank);ORF_evidence=Q84LK3 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620);InterPro=Aldehyde dehydrogenase domain (IPR015590),Aldehyde dehydrogenase%2C conserved site (IPR016160),Aldehyde/histidinol dehydrogenase (IPR016161),Aldehyde dehydrogenase%2C N-terminal (IPR016162),Aldehyde dehydrogenase%2C C-terminal (IPR016163);NIAS_FLcDNA=J023088C02;Manual Curation=July 14%2C 2009;Literature_PMID=17129318,18491070,18599581;Oryzabase=829;Expression=AK071221;TENOR=Os08t0424500-01;KEGG=Os08t0424500-01 (EC:1.2.1.3)
Chr08	irgsp1_rep	five_prime_UTR	20379823	20379968	.	+	.	Parent=Os08t0424500-01
Chr08	irgsp1_rep	CDS	20379969	20380077	.	+	0	Parent=Os08t0424500-01
Chr08	irgsp1_rep	CDS	20380177	20380319	.	+	2	Parent=Os08t0424500-01
Chr08	irgsp1_rep	CDS	20381372	20381452	.	+	0	Parent=Os08t0424500-01
Chr08	irgsp1_rep	CDS	20381548	20381696	.	+	0	Parent=Os08t0424500-01
Chr08	irgsp1_rep	CDS	20382394	20382486	.	+	1	Parent=Os08t0424500-01
Chr08	irgsp1_rep	CDS	20382618	20382741	.	+	1	Parent=Os08t0424500-01
Chr08	irgsp1_rep	CDS	20382826	20382891	.	+	0	Parent=Os08t0424500-01
Chr08	irgsp1_rep	CDS	20383082	20383148	.	+	0	Parent=Os08t0424500-01
Chr08	irgsp1_rep	CDS	20383841	20383917	.	+	2	Parent=Os08t0424500-01
Chr08	irgsp1_rep	CDS	20384273	20384386	.	+	0	Parent=Os08t0424500-01
Chr08	irgsp1_rep	CDS	20384787	20384864	.	+	0	Parent=Os08t0424500-01
Chr08	irgsp1_rep	CDS	20384946	20385097	.	+	0	Parent=Os08t0424500-01
Chr08	irgsp1_rep	CDS	20385201	20385261	.	+	1	Parent=Os08t0424500-01
Chr08	irgsp1_rep	CDS	20385533	20385639	.	+	0	Parent=Os08t0424500-01
Chr08	irgsp1_rep	CDS	20385738	20385828	.	+	1	Parent=Os08t0424500-01
Chr08	irgsp1_rep	three_prime_UTR	20385829	20385975	.	+	.	Parent=Os08t0424500-01
Chr08	irgsp1_rep	mRNA	20381557	20385975	.	+	.	ID=Os08t0424500-02;Name=Os08t0424500-02;Locus_id=Os08g0424500;CGSNL Gene Symbol=SK2(T)(SCL%2C FGR);CGSNL Gene Name=SCENTED KERNEL 2;Oryzabase Gene Symbol Synonym(s)=sk2(t)(scl%2C fgr)%2C fgr%2C scl%2C BAD2%2C BADH2%2C sk2%2C OsBADH2%2C Badh2%2C badh2%2C Os2AP%2C BADH-2%2C OsALDH10A8%2C ALDH10A8;Oryzabase Gene Name Synonym(s)=scented kernel2%2C scented kernel 2%2C fragrance%2C betaine-aldehyde dehydrogenase 2%2C betaine aldehyde dehydrogenase 2%2C scented kernel-2%2C betaine aldehyde dehydrogenase-2%2C Aldehyde dehydrogenase 10A8;Note=Similar to Betaine aldehyde dehydrogenase.;Transcript_evidence=AK060461 (DDBJ%2C Best hit);ORF_evidence=B3VMC0 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620);InterPro=Aldehyde dehydrogenase domain (IPR015590),Aldehyde dehydrogenase%2C conserved site (IPR016160),Aldehyde/histidinol dehydrogenase (IPR016161),Aldehyde dehydrogenase%2C N-terminal (IPR016162),Aldehyde dehydrogenase%2C C-terminal (IPR016163);NIAS_FLcDNA=001-012-B10;Oryzabase=829;Expression=AK060461;TENOR=Os08t0424500-02;KEGG=Os08t0424500-02 (EC:1.2.1.3)
Chr08	irgsp1_rep	CDS	20381557	20381696	.	+	0	Parent=Os08t0424500-02
Chr08	irgsp1_rep	CDS	20382394	20382486	.	+	1	Parent=Os08t0424500-02
Chr08	irgsp1_rep	CDS	20382618	20382741	.	+	1	Parent=Os08t0424500-02
Chr08	irgsp1_rep	CDS	20382826	20382891	.	+	0	Parent=Os08t0424500-02
Chr08	irgsp1_rep	CDS	20383082	20383148	.	+	0	Parent=Os08t0424500-02
Chr08	irgsp1_rep	CDS	20383841	20383917	.	+	2	Parent=Os08t0424500-02
Chr08	irgsp1_rep	CDS	20384273	20384386	.	+	0	Parent=Os08t0424500-02
Chr08	irgsp1_rep	CDS	20384787	20384864	.	+	0	Parent=Os08t0424500-02
Chr08	irgsp1_rep	CDS	20384946	20385097	.	+	0	Parent=Os08t0424500-02
Chr08	irgsp1_rep	CDS	20385201	20385261	.	+	1	Parent=Os08t0424500-02
Chr08	irgsp1_rep	CDS	20385533	20385639	.	+	0	Parent=Os08t0424500-02
Chr08	irgsp1_rep	CDS	20385738	20385828	.	+	1	Parent=Os08t0424500-02
Chr08	irgsp1_rep	three_prime_UTR	20385829	20385975	.	+	.	Parent=Os08t0424500-02
Chr08	irgsp1_rep	mRNA	20388591	20399390	.	-	.	ID=Os08t0424600-01;Name=Os08t0424600-01;Locus_id=Os08g0424600;Note=Hypothetical gene.;Transcript_evidence=AK100251 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023060O04;Expression=AK100251;TENOR=Os08t0424600-01;KEGG=Os08t0424600-01
Chr08	irgsp1_rep	five_prime_UTR	20399221	20399390	.	-	.	Parent=Os08t0424600-01
Chr08	irgsp1_rep	five_prime_UTR	20393881	20394149	.	-	.	Parent=Os08t0424600-01
Chr08	irgsp1_rep	five_prime_UTR	20392916	20393019	.	-	.	Parent=Os08t0424600-01
Chr08	irgsp1_rep	five_prime_UTR	20391431	20392427	.	-	.	Parent=Os08t0424600-01
Chr08	irgsp1_rep	CDS	20391212	20391430	.	-	0	Parent=Os08t0424600-01
Chr08	irgsp1_rep	three_prime_UTR	20389226	20391211	.	-	.	Parent=Os08t0424600-01
Chr08	irgsp1_rep	three_prime_UTR	20388591	20388993	.	-	.	Parent=Os08t0424600-01
Chr08	irgsp1_rep	mRNA	20389564	20392287	.	+	.	ID=Os08t0424700-00;Name=Os08t0424700-00;Locus_id=Os08g0424700;Note=NB-ARC domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001061834.1 (RefSeq);GO=Biological Process: defense response (GO:0006952),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182),ATPase%2C AAA+ type%2C core (IPR003593);TENOR=Os08t0424700-00;KEGG=Os08t0424700-00
Chr08	irgsp1_rep	CDS	20389564	20392287	.	+	0	Parent=Os08t0424700-00
Chr08	irgsp1_rep	mRNA	20395161	20395535	.	-	.	ID=Os08t0424850-00;Name=Os08t0424850-00;Locus_id=Os08g0424850;Note=Non-protein coding transcript.;Transcript_evidence=FP100202 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0424850-00
Chr08	irgsp1_rep	exon	20395161	20395535	.	-	.	Parent=Os08t0424850-00
Chr08	irgsp1_rep	mRNA	20402026	20405973	.	+	.	ID=Os08t0425000-01;Name=Os08t0425000-01;Locus_id=Os08g0425000;Note=Similar to mRNA%2C clone: RTFL01-05-M08.;Transcript_evidence=AK105302 (DDBJ%2C Best hit);ORF_evidence=E4MW90 (UniProt);NIAS_FLcDNA=001-117-A06;Expression=AK105302;TENOR=Os08t0425000-01;KEGG=Os08t0425000-01
Chr08	irgsp1_rep	five_prime_UTR	20402026	20402138	.	+	.	Parent=Os08t0425000-01
Chr08	irgsp1_rep	CDS	20402139	20402525	.	+	0	Parent=Os08t0425000-01
Chr08	irgsp1_rep	CDS	20403303	20403443	.	+	0	Parent=Os08t0425000-01
Chr08	irgsp1_rep	CDS	20403545	20403910	.	+	0	Parent=Os08t0425000-01
Chr08	irgsp1_rep	CDS	20404387	20404629	.	+	0	Parent=Os08t0425000-01
Chr08	irgsp1_rep	CDS	20404715	20404807	.	+	0	Parent=Os08t0425000-01
Chr08	irgsp1_rep	CDS	20405133	20405332	.	+	0	Parent=Os08t0425000-01
Chr08	irgsp1_rep	CDS	20405499	20405712	.	+	1	Parent=Os08t0425000-01
Chr08	irgsp1_rep	three_prime_UTR	20405713	20405973	.	+	.	Parent=Os08t0425000-01
Chr08	irgsp1_rep	mRNA	20402255	20405717	.	-	.	ID=Os08t0425050-00;Name=Os08t0425050-00;Locus_id=Os08g0425050;Note=Hypothetical protein.;Transcript_evidence=tplb0042d04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0425050-00
Chr08	irgsp1_rep	five_prime_UTR	20405509	20405717	.	-	.	Parent=Os08t0425050-00
Chr08	irgsp1_rep	five_prime_UTR	20405159	20405340	.	-	.	Parent=Os08t0425050-00
Chr08	irgsp1_rep	five_prime_UTR	20404741	20404829	.	-	.	Parent=Os08t0425050-00
Chr08	irgsp1_rep	five_prime_UTR	20404354	20404652	.	-	.	Parent=Os08t0425050-00
Chr08	irgsp1_rep	five_prime_UTR	20403545	20403872	.	-	.	Parent=Os08t0425050-00
Chr08	irgsp1_rep	five_prime_UTR	20403328	20403443	.	-	.	Parent=Os08t0425050-00
Chr08	irgsp1_rep	CDS	20403305	20403327	.	-	0	Parent=Os08t0425050-00
Chr08	irgsp1_rep	CDS	20402255	20402490	.	-	1	Parent=Os08t0425050-00
Chr08	irgsp1_rep	mRNA	20408221	20418654	.	+	.	ID=Os08t0425100-01;Name=Os08t0425100-01;Locus_id=Os08g0425100;Oryzabase Gene Symbol Synonym(s)=OsDRP2C%2C DRP2C;Oryzabase Gene Name Synonym(s)=dynamin-related protein 2C;Note=Dynamin family protein.;Transcript_evidence=AK069134 (DDBJ%2C Best hit);ORF_evidence=NP_001152484.1 (RefSeq);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: protein binding (GO:0005515),Molecular Function: GTP binding (GO:0005525);InterPro=Dynamin central domain (IPR000375),Dynamin%2C GTPase domain (IPR001401),Pleckstrin homology domain (IPR001849),Pleckstrin homology-type (IPR011993),Dynamin%2C GTPase region%2C conserved site (IPR019762),Dynamin (IPR022812);NIAS_FLcDNA=J023007E19;Oryzabase=21599;Expression=AK069134;TENOR=Os08t0425100-01;KEGG=Os08t0425100-01
Chr08	irgsp1_rep	five_prime_UTR	20408221	20408457	.	+	.	Parent=Os08t0425100-01
Chr08	irgsp1_rep	CDS	20408458	20408601	.	+	0	Parent=Os08t0425100-01
Chr08	irgsp1_rep	CDS	20408720	20408770	.	+	0	Parent=Os08t0425100-01
Chr08	irgsp1_rep	CDS	20408930	20409050	.	+	0	Parent=Os08t0425100-01
Chr08	irgsp1_rep	CDS	20409210	20409308	.	+	2	Parent=Os08t0425100-01
Chr08	irgsp1_rep	CDS	20410031	20410092	.	+	2	Parent=Os08t0425100-01
Chr08	irgsp1_rep	CDS	20410921	20411038	.	+	0	Parent=Os08t0425100-01
Chr08	irgsp1_rep	CDS	20411245	20411584	.	+	2	Parent=Os08t0425100-01
Chr08	irgsp1_rep	CDS	20411676	20411823	.	+	1	Parent=Os08t0425100-01
Chr08	irgsp1_rep	CDS	20412284	20412385	.	+	0	Parent=Os08t0425100-01
Chr08	irgsp1_rep	CDS	20412481	20412600	.	+	0	Parent=Os08t0425100-01
Chr08	irgsp1_rep	CDS	20413053	20413136	.	+	0	Parent=Os08t0425100-01
Chr08	irgsp1_rep	CDS	20413215	20413342	.	+	0	Parent=Os08t0425100-01
Chr08	irgsp1_rep	CDS	20415555	20415630	.	+	1	Parent=Os08t0425100-01
Chr08	irgsp1_rep	CDS	20415797	20415872	.	+	0	Parent=Os08t0425100-01
Chr08	irgsp1_rep	CDS	20416041	20416117	.	+	2	Parent=Os08t0425100-01
Chr08	irgsp1_rep	CDS	20416216	20416272	.	+	0	Parent=Os08t0425100-01
Chr08	irgsp1_rep	CDS	20416652	20416796	.	+	0	Parent=Os08t0425100-01
Chr08	irgsp1_rep	CDS	20416875	20417047	.	+	2	Parent=Os08t0425100-01
Chr08	irgsp1_rep	CDS	20417169	20417281	.	+	0	Parent=Os08t0425100-01
Chr08	irgsp1_rep	CDS	20417366	20417432	.	+	1	Parent=Os08t0425100-01
Chr08	irgsp1_rep	three_prime_UTR	20417433	20417433	.	+	.	Parent=Os08t0425100-01
Chr08	irgsp1_rep	three_prime_UTR	20417757	20417929	.	+	.	Parent=Os08t0425100-01
Chr08	irgsp1_rep	three_prime_UTR	20418187	20418654	.	+	.	Parent=Os08t0425100-01
Chr08	irgsp1_rep	mRNA	20408241	20415631	.	+	.	ID=Os08t0425100-02;Name=Os08t0425100-02;Locus_id=Os08g0425100;Oryzabase Gene Symbol Synonym(s)=OsDRP2C%2C DRP2C;Oryzabase Gene Name Synonym(s)=dynamin-related protein 2C;Note=Similar to DRP.;Transcript_evidence=AK072791 (DDBJ%2C Best hit);ORF_evidence=Q5DMX3 (UniProt);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Dynamin central domain (IPR000375),Dynamin%2C GTPase domain (IPR001401),Dynamin%2C GTPase region%2C conserved site (IPR019762),Dynamin (IPR022812);NIAS_FLcDNA=J023141K11;Oryzabase=21599;TENOR=Os08t0425100-02
Chr08	irgsp1_rep	five_prime_UTR	20408241	20408457	.	+	.	Parent=Os08t0425100-02
Chr08	irgsp1_rep	CDS	20408458	20408601	.	+	0	Parent=Os08t0425100-02
Chr08	irgsp1_rep	CDS	20408720	20408770	.	+	0	Parent=Os08t0425100-02
Chr08	irgsp1_rep	CDS	20408930	20409050	.	+	0	Parent=Os08t0425100-02
Chr08	irgsp1_rep	CDS	20409210	20409308	.	+	2	Parent=Os08t0425100-02
Chr08	irgsp1_rep	CDS	20410031	20410092	.	+	2	Parent=Os08t0425100-02
Chr08	irgsp1_rep	CDS	20410921	20411038	.	+	0	Parent=Os08t0425100-02
Chr08	irgsp1_rep	CDS	20411245	20411584	.	+	2	Parent=Os08t0425100-02
Chr08	irgsp1_rep	CDS	20411676	20411823	.	+	1	Parent=Os08t0425100-02
Chr08	irgsp1_rep	CDS	20412284	20412385	.	+	0	Parent=Os08t0425100-02
Chr08	irgsp1_rep	CDS	20412481	20412600	.	+	0	Parent=Os08t0425100-02
Chr08	irgsp1_rep	CDS	20413053	20413136	.	+	0	Parent=Os08t0425100-02
Chr08	irgsp1_rep	CDS	20413215	20413342	.	+	0	Parent=Os08t0425100-02
Chr08	irgsp1_rep	CDS	20415555	20415631	.	+	1	Parent=Os08t0425100-02
Chr08	irgsp1_rep	mRNA	20423739	20427777	.	+	.	ID=Os08t0425200-01;Name=Os08t0425200-01;Locus_id=Os08g0425200;Oryzabase Gene Symbol Synonym(s)=RcbX%2C RbcX;Note=Chaperonin-like RbcX domain containing protein.;Transcript_evidence=AK099569 (DDBJ%2C Best hit);ORF_evidence=A2YVD6 (UniProt);InterPro=Chaperonin-like RbcX (IPR003435);NIAS_FLcDNA=J013034N11;Oryzabase=18558;Expression=AK099569;TENOR=Os08t0425200-01;KEGG=Os08t0425200-01
Chr08	irgsp1_rep	five_prime_UTR	20423739	20423813	.	+	.	Parent=Os08t0425200-01
Chr08	irgsp1_rep	CDS	20423814	20424006	.	+	0	Parent=Os08t0425200-01
Chr08	irgsp1_rep	CDS	20424979	20425073	.	+	2	Parent=Os08t0425200-01
Chr08	irgsp1_rep	CDS	20425441	20425558	.	+	0	Parent=Os08t0425200-01
Chr08	irgsp1_rep	CDS	20425735	20425751	.	+	2	Parent=Os08t0425200-01
Chr08	irgsp1_rep	CDS	20425842	20425904	.	+	0	Parent=Os08t0425200-01
Chr08	irgsp1_rep	CDS	20427386	20427460	.	+	0	Parent=Os08t0425200-01
Chr08	irgsp1_rep	three_prime_UTR	20427461	20427777	.	+	.	Parent=Os08t0425200-01
Chr08	irgsp1_rep	mRNA	20429460	20431143	.	-	.	ID=Os08t0425300-00;Name=Os08t0425300-00;Locus_id=Os08g0425300;CGSNL Gene Symbol=GH9B10;CGSNL Gene Name=GLYCOSIDE HYDROLASE 9B10;Oryzabase Gene Symbol Synonym(s)=OsGH9B10;Oryzabase Gene Name Synonym(s)=glycoside hydrolase OsGH9B10%2C glycoside hydrolase 9B10;Note=Similar to Endoglucanase 21.;Transcript_evidence=AK363849 (DDBJ);ORF_evidence=Q84Q51 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 9 (IPR001701),Six-hairpin glycosidase-like (IPR008928),Six-hairpin glycosidase (IPR012341),Glycoside hydrolase%2C family 9%2C active site (IPR018221);Oryzabase=11710;TENOR=Os08t0425300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	20431050	20431143	.	-	.	Parent=Os08t0425300-00
Chr08	irgsp1_rep	CDS	20429460	20431049	.	-	0	Parent=Os08t0425300-00
Chr08	irgsp1_rep	mRNA	20450032	20452270	.	-	.	ID=Os08t0425500-01;Name=Os08t0425500-01;Locus_id=Os08g0425500;Note=Endonuclease/exonuclease/phosphatase domain containing protein.;Transcript_evidence=AK106998 (DDBJ%2C Best hit);ORF_evidence=NP_001147113.1 (RefSeq);GO=Molecular Function: inositol or phosphatidylinositol phosphatase activity (GO:0004437);InterPro=Inositol polyphosphate-related phosphatase (IPR000300),Endonuclease/exonuclease/phosphatase (IPR005135);NIAS_FLcDNA=002-120-B12;Expression=AK106998;TENOR=Os08t0425500-01;KEGG=Os08t0425500-01 (EC:3.1.3.36)
Chr08	irgsp1_rep	five_prime_UTR	20452023	20452270	.	-	.	Parent=Os08t0425500-01
Chr08	irgsp1_rep	CDS	20451984	20452022	.	-	0	Parent=Os08t0425500-01
Chr08	irgsp1_rep	CDS	20451778	20451884	.	-	0	Parent=Os08t0425500-01
Chr08	irgsp1_rep	CDS	20451575	20451682	.	-	1	Parent=Os08t0425500-01
Chr08	irgsp1_rep	CDS	20451176	20451488	.	-	1	Parent=Os08t0425500-01
Chr08	irgsp1_rep	CDS	20450883	20451094	.	-	0	Parent=Os08t0425500-01
Chr08	irgsp1_rep	CDS	20450509	20450781	.	-	1	Parent=Os08t0425500-01
Chr08	irgsp1_rep	CDS	20450229	20450421	.	-	1	Parent=Os08t0425500-01
Chr08	irgsp1_rep	three_prime_UTR	20450032	20450228	.	-	.	Parent=Os08t0425500-01
Chr08	irgsp1_rep	mRNA	20450507	20451061	.	+	.	ID=Os08t0425600-00;Name=Os08t0425600-00;Locus_id=Os08g0425600;Note=Hypothetical protein.;Transcript_evidence=AK368831 (DDBJ);ORF_evidence=GeneMark;TENOR=Os08t0425600-00
Chr08	irgsp1_rep	five_prime_UTR	20450507	20450507	.	+	.	Parent=Os08t0425600-00
Chr08	irgsp1_rep	CDS	20450508	20451061	.	+	0	Parent=Os08t0425600-00
Chr08	irgsp1_rep	mRNA	20459698	20461499	.	+	.	ID=Os08t0425700-01;Name=Os08t0425700-01;Locus_id=Os08g0425700;CGSNL Gene Symbol=ANN7;CGSNL Gene Name=ANNEXIN 7;Oryzabase Gene Symbol Synonym(s)=OsANN7;Oryzabase Gene Name Synonym(s)=Annexin 7;Note=Similar to Annexin-like protein.;Transcript_evidence=AK059408 (DDBJ%2C Best hit),AK104119 (DDBJ%2C Best hit);ORF_evidence=NP_001147343.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509),Molecular Function: calcium-dependent phospholipid binding (GO:0005544);InterPro=Annexin (IPR001464),Annexin%2C plant (IPR009118),Annexin repeat%2C conserved site (IPR018252),Annexin repeat (IPR018502);NIAS_FLcDNA=001-027-C04,006-203-B12;Oryzabase=15470;TENOR=Os08t0425700-01
Chr08	irgsp1_rep	five_prime_UTR	20459698	20459732	.	+	.	Parent=Os08t0425700-01
Chr08	irgsp1_rep	CDS	20459733	20460404	.	+	0	Parent=Os08t0425700-01
Chr08	irgsp1_rep	CDS	20460917	20461006	.	+	0	Parent=Os08t0425700-01
Chr08	irgsp1_rep	CDS	20461145	20461348	.	+	0	Parent=Os08t0425700-01
Chr08	irgsp1_rep	three_prime_UTR	20461349	20461499	.	+	.	Parent=Os08t0425700-01
Chr08	irgsp1_rep	mRNA	20461756	20465184	.	-	.	ID=Os08t0425800-01;Name=Os08t0425800-01;Locus_id=Os08g0425800;Note=Similar to DRP2 protein (Fragment).;Transcript_evidence=AK061339 (DDBJ%2C Best hit);ORF_evidence=Q2MG91 (UniProt);NIAS_FLcDNA=006-303-C12;Oryzabase=20462;TENOR=Os08t0425800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	20465183	20465184	.	-	.	Parent=Os08t0425800-01
Chr08	irgsp1_rep	CDS	20464816	20465182	.	-	0	Parent=Os08t0425800-01
Chr08	irgsp1_rep	CDS	20463796	20464033	.	-	2	Parent=Os08t0425800-01
Chr08	irgsp1_rep	CDS	20461998	20462160	.	-	1	Parent=Os08t0425800-01
Chr08	irgsp1_rep	three_prime_UTR	20461756	20461997	.	-	.	Parent=Os08t0425800-01
Chr08	irgsp1_rep	mRNA	20461754	20465163	.	-	.	ID=Os08t0425800-02;Name=Os08t0425800-02;Locus_id=Os08g0425800;Note=Hypothetical conserved gene.;Transcript_evidence=AK101198 (DDBJ%2C Best hit);ORF_evidence=B8BAZ7 (UniProt);NIAS_FLcDNA=J033030L06;Oryzabase=20462;Expression=AK101198;TENOR=Os08t0425800-02;KEGG=Os08t0425800-02
Chr08	irgsp1_rep	five_prime_UTR	20465113	20465163	.	-	.	Parent=Os08t0425800-02
Chr08	irgsp1_rep	CDS	20464714	20465112	.	-	0	Parent=Os08t0425800-02
Chr08	irgsp1_rep	three_prime_UTR	20461754	20464713	.	-	.	Parent=Os08t0425800-02
Chr08	irgsp1_rep	mRNA	20468337	20470477	.	+	.	ID=Os08t0426000-00;Name=Os08t0426000-00;Locus_id=Os08g0426000;Note=Similar to DNA-directed RNA polymerases I%2C II%2C and III 14.4 kDa polypeptide.;Transcript_evidence=EU965129 (DDBJ);ORF_evidence=B6TJG4 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Cellular Component: RNA polymerase complex (GO:0030880),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899);InterPro=RNA polymerase%2C subunit omega/K/RPABC2 (IPR006110),DNA-directed RNA polymerase%2C subunit K/RPABC2 (IPR006111),RNA polymerase subunit%2C RPB6/omega (IPR012293),DNA-directed RNA polymerase%2C 14-18kDa subunit%2C conserved site (IPR020708);TENOR=Os08t0426000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	20468337	20468999	.	+	0	Parent=Os08t0426000-00
Chr08	irgsp1_rep	CDS	20470121	20470320	.	+	0	Parent=Os08t0426000-00
Chr08	irgsp1_rep	CDS	20470414	20470477	.	+	1	Parent=Os08t0426000-00
Chr08	irgsp1_rep	mRNA	20480087	20481526	.	-	.	ID=Os08t0426100-00;Name=Os08t0426100-00;Locus_id=Os08g0426100;Oryzabase Gene Symbol Synonym(s)=Os_F0695;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0051a13 (Wheat FLcDNA);ORF_evidence=Q84Q44 (UniProt);Oryzabase=17459;TENOR=Os08t0426100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	20480919	20481526	.	-	0	Parent=Os08t0426100-00
Chr08	irgsp1_rep	CDS	20480622	20480865	.	-	1	Parent=Os08t0426100-00
Chr08	irgsp1_rep	CDS	20480351	20480365	.	-	0	Parent=Os08t0426100-00
Chr08	irgsp1_rep	three_prime_UTR	20480087	20480350	.	-	.	Parent=Os08t0426100-00
Chr08	irgsp1_rep	mRNA	20486918	20490018	.	+	.	ID=Os08t0426300-01;Name=Os08t0426300-01;Locus_id=Os08g0426300;Note=Non-protein coding transcript.;Transcript_evidence=AK288888 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090079O09;TENOR=Os08t0426300-01
Chr08	irgsp1_rep	exon	20486918	20490018	.	+	.	Parent=Os08t0426300-01
Chr08	irgsp1_rep	mRNA	20528683	20534865	.	+	.	ID=Os08t0426866-00;Name=Os08t0426866-00;Locus_id=Os08g0426866;Note=Similar to Kanadi1.;Transcript_evidence=EU954667 (DDBJ);ORF_evidence=B5M492 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778);TENOR=Os08t0426866-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	20528683	20528699	.	+	.	Parent=Os08t0426866-00
Chr08	irgsp1_rep	CDS	20528700	20529564	.	+	0	Parent=Os08t0426866-00
Chr08	irgsp1_rep	CDS	20529645	20529721	.	+	2	Parent=Os08t0426866-00
Chr08	irgsp1_rep	CDS	20530492	20530537	.	+	0	Parent=Os08t0426866-00
Chr08	irgsp1_rep	CDS	20530723	20530954	.	+	2	Parent=Os08t0426866-00
Chr08	irgsp1_rep	CDS	20534433	20534522	.	+	1	Parent=Os08t0426866-00
Chr08	irgsp1_rep	CDS	20534742	20534838	.	+	1	Parent=Os08t0426866-00
Chr08	irgsp1_rep	three_prime_UTR	20534839	20534865	.	+	.	Parent=Os08t0426866-00
Chr08	irgsp1_rep	mRNA	20522449	20525910	.	-	.	ID=Os08t0426900-01;Name=Os08t0426900-01;Locus_id=Os08g0426900;Note=Conserved hypothetical protein.;Transcript_evidence=AK288232 (DDBJ%2C Best hit);ORF_evidence=Q7EY64 (UniProt);NIAS_FLcDNA=J090012P03;TENOR=Os08t0426900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	20523002	20525910	.	-	.	Parent=Os08t0426900-01
Chr08	irgsp1_rep	CDS	20522705	20523001	.	-	0	Parent=Os08t0426900-01
Chr08	irgsp1_rep	three_prime_UTR	20522449	20522704	.	-	.	Parent=Os08t0426900-01
Chr08	irgsp1_rep	mRNA	20537384	20538973	.	-	.	ID=Os08t0427100-01;Name=Os08t0427100-01;Locus_id=Os08g0427100;Note=Hypothetical conserved gene.;Transcript_evidence=AK067877 (DDBJ%2C Best hit);ORF_evidence=B9G103 (UniProt);NIAS_FLcDNA=J013122E23;TENOR=Os08t0427100-01;KEGG=Os08t0427100-01
Chr08	irgsp1_rep	five_prime_UTR	20538881	20538973	.	-	.	Parent=Os08t0427100-01
Chr08	irgsp1_rep	CDS	20538662	20538880	.	-	0	Parent=Os08t0427100-01
Chr08	irgsp1_rep	three_prime_UTR	20537384	20538661	.	-	.	Parent=Os08t0427100-01
Chr08	irgsp1_rep	mRNA	20534620	20538765	.	-	.	ID=Os08t0427100-02;Name=Os08t0427100-02;Locus_id=Os08g0427100;Note=Hypothetical protein.;Transcript_evidence=AK072196 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013156D02;TENOR=Os08t0427100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	20536118	20538765	.	-	.	Parent=Os08t0427100-02
Chr08	irgsp1_rep	CDS	20535884	20536117	.	-	0	Parent=Os08t0427100-02
Chr08	irgsp1_rep	three_prime_UTR	20534620	20535883	.	-	.	Parent=Os08t0427100-02
Chr08	irgsp1_rep	mRNA	20528292	20535292	.	-	.	ID=Os08t0427100-03;Name=Os08t0427100-03;Locus_id=Os08g0427100;Note=Hypothetical gene.;Transcript_evidence=AK287788 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065172N06;TENOR=Os08t0427100-03;KEGG=Os08t0427100-03
Chr08	irgsp1_rep	five_prime_UTR	20534725	20535292	.	-	.	Parent=Os08t0427100-03
Chr08	irgsp1_rep	five_prime_UTR	20534433	20534493	.	-	.	Parent=Os08t0427100-03
Chr08	irgsp1_rep	five_prime_UTR	20530723	20530954	.	-	.	Parent=Os08t0427100-03
Chr08	irgsp1_rep	five_prime_UTR	20530492	20530537	.	-	.	Parent=Os08t0427100-03
Chr08	irgsp1_rep	five_prime_UTR	20529645	20529721	.	-	.	Parent=Os08t0427100-03
Chr08	irgsp1_rep	five_prime_UTR	20529166	20529564	.	-	.	Parent=Os08t0427100-03
Chr08	irgsp1_rep	CDS	20528743	20529165	.	-	0	Parent=Os08t0427100-03
Chr08	irgsp1_rep	three_prime_UTR	20528292	20528742	.	-	.	Parent=Os08t0427100-03
Chr08	irgsp1_rep	mRNA	20553131	20557853	.	+	.	ID=Os08t0427300-01;Name=Os08t0427300-01;Locus_id=Os08g0427300;Oryzabase Gene Symbol Synonym(s)=NP70;Note=Protein of unknown function DUF1712%2C fungi domain containing protein.;Transcript_evidence=AK066491 (DDBJ%2C Best hit);ORF_evidence=B9G104 (UniProt);InterPro=Protein of unknown function DUF1712%2C fungi (IPR013176);NIAS_FLcDNA=J013070L23;Oryzabase=16289;Expression=AK066491;TENOR=Os08t0427300-01;KEGG=Os08t0427300-01
Chr08	irgsp1_rep	five_prime_UTR	20553131	20553312	.	+	.	Parent=Os08t0427300-01
Chr08	irgsp1_rep	CDS	20553313	20553491	.	+	0	Parent=Os08t0427300-01
Chr08	irgsp1_rep	CDS	20554165	20554258	.	+	1	Parent=Os08t0427300-01
Chr08	irgsp1_rep	CDS	20554682	20554865	.	+	0	Parent=Os08t0427300-01
Chr08	irgsp1_rep	CDS	20554963	20555072	.	+	2	Parent=Os08t0427300-01
Chr08	irgsp1_rep	CDS	20555569	20555664	.	+	0	Parent=Os08t0427300-01
Chr08	irgsp1_rep	CDS	20555766	20555920	.	+	0	Parent=Os08t0427300-01
Chr08	irgsp1_rep	CDS	20555984	20556227	.	+	1	Parent=Os08t0427300-01
Chr08	irgsp1_rep	CDS	20556400	20556555	.	+	0	Parent=Os08t0427300-01
Chr08	irgsp1_rep	CDS	20556841	20557070	.	+	0	Parent=Os08t0427300-01
Chr08	irgsp1_rep	CDS	20557489	20557519	.	+	1	Parent=Os08t0427300-01
Chr08	irgsp1_rep	three_prime_UTR	20557520	20557853	.	+	.	Parent=Os08t0427300-01
Chr08	irgsp1_rep	mRNA	20554975	20557882	.	+	.	ID=Os08t0427300-02;Name=Os08t0427300-02;Locus_id=Os08g0427300;Oryzabase Gene Symbol Synonym(s)=NP70;Note=Similar to Myrosinase (Fragment).;Transcript_evidence=AK061889 (DDBJ%2C Best hit);ORF_evidence=Q8W154 (UniProt);InterPro=Protein of unknown function DUF1712%2C fungi (IPR013176);NIAS_FLcDNA=001-041-G01;Oryzabase=16289;TENOR=Os08t0427300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	20554975	20555033	.	+	.	Parent=Os08t0427300-02
Chr08	irgsp1_rep	CDS	20555034	20555072	.	+	0	Parent=Os08t0427300-02
Chr08	irgsp1_rep	CDS	20555569	20555664	.	+	0	Parent=Os08t0427300-02
Chr08	irgsp1_rep	CDS	20555766	20555920	.	+	0	Parent=Os08t0427300-02
Chr08	irgsp1_rep	CDS	20555984	20556227	.	+	1	Parent=Os08t0427300-02
Chr08	irgsp1_rep	CDS	20556400	20556555	.	+	0	Parent=Os08t0427300-02
Chr08	irgsp1_rep	CDS	20556841	20557070	.	+	0	Parent=Os08t0427300-02
Chr08	irgsp1_rep	CDS	20557489	20557519	.	+	1	Parent=Os08t0427300-02
Chr08	irgsp1_rep	three_prime_UTR	20557520	20557882	.	+	.	Parent=Os08t0427300-02
Chr08	irgsp1_rep	mRNA	20559024	20566198	.	+	.	ID=Os08t0427500-01;Name=Os08t0427500-01;Locus_id=Os08g0427500;Oryzabase Gene Symbol Synonym(s)=XPC;Note=DNA repair protein Rad4 family protein.;Transcript_evidence=AK102608 (DDBJ%2C Best hit);ORF_evidence=XP_002444371.1 (RefSeq);GO=Biological Process: nucleotide-excision repair (GO:0006289),Cellular Component: nucleus (GO:0005634),Molecular Function: damaged DNA binding (GO:0003684);InterPro=DNA repair protein Rad4 (IPR004583),Rad4/PNGase transglutaminase-like fold (IPR018325),DNA repair protein Rad4%2C DNA-binding domain 1 (IPR018326),DNA repair protein Rad4%2C DNA-binding domain 2 (IPR018327),DNA repair protein Rad4%2C DNA-binding domain 3 (IPR018328);NIAS_FLcDNA=J033099B08;Oryzabase=21264;Expression=AK102608;TENOR=Os08t0427500-01;KEGG=Os08t0427500-01
Chr08	irgsp1_rep	five_prime_UTR	20559024	20559265	.	+	.	Parent=Os08t0427500-01
Chr08	irgsp1_rep	CDS	20559266	20559329	.	+	0	Parent=Os08t0427500-01
Chr08	irgsp1_rep	CDS	20559454	20559557	.	+	2	Parent=Os08t0427500-01
Chr08	irgsp1_rep	CDS	20560017	20560307	.	+	0	Parent=Os08t0427500-01
Chr08	irgsp1_rep	CDS	20560624	20560716	.	+	0	Parent=Os08t0427500-01
Chr08	irgsp1_rep	CDS	20560881	20560976	.	+	0	Parent=Os08t0427500-01
Chr08	irgsp1_rep	CDS	20561079	20561180	.	+	0	Parent=Os08t0427500-01
Chr08	irgsp1_rep	CDS	20562442	20562491	.	+	0	Parent=Os08t0427500-01
Chr08	irgsp1_rep	CDS	20563039	20563770	.	+	1	Parent=Os08t0427500-01
Chr08	irgsp1_rep	CDS	20563888	20564051	.	+	1	Parent=Os08t0427500-01
Chr08	irgsp1_rep	CDS	20564164	20564360	.	+	2	Parent=Os08t0427500-01
Chr08	irgsp1_rep	CDS	20564433	20564588	.	+	0	Parent=Os08t0427500-01
Chr08	irgsp1_rep	CDS	20564687	20564896	.	+	0	Parent=Os08t0427500-01
Chr08	irgsp1_rep	CDS	20565523	20565906	.	+	0	Parent=Os08t0427500-01
Chr08	irgsp1_rep	three_prime_UTR	20565907	20566198	.	+	.	Parent=Os08t0427500-01
Chr08	irgsp1_rep	mRNA	20566526	20567096	.	+	.	ID=Os08t0427550-00;Name=Os08t0427550-00;Locus_id=Os08g0427550;Note=Hypothetical protein.;Transcript_evidence=EU971977 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0427550-00
Chr08	irgsp1_rep	CDS	20566526	20567017	.	+	0	Parent=Os08t0427550-00
Chr08	irgsp1_rep	three_prime_UTR	20567018	20567096	.	+	.	Parent=Os08t0427550-00
Chr08	irgsp1_rep	mRNA	20567577	20569373	.	-	.	ID=Os08t0427600-00;Name=Os08t0427600-00;Locus_id=Os08g0427600;Note=Similar to receptor kinase.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001147470.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);TENOR=Os08t0427600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	20568053	20569373	.	-	0	Parent=Os08t0427600-00
Chr08	irgsp1_rep	CDS	20567577	20567602	.	-	2	Parent=Os08t0427600-00
Chr08	irgsp1_rep	mRNA	20573199	20573985	.	+	.	ID=Os08t0427700-00;Name=Os08t0427700-00;Locus_id=Os08g0427700;Note=Histone H2A.;Transcript_evidence=CU406173 (DDBJ%2C Best hit);ORF_evidence=D7TRY1 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H2A (IPR002119),Histone core (IPR007125),Histone-fold (IPR009072);TENOR=Os08t0427700-00;KEGG=Os08t0427700-00
Chr08	irgsp1_rep	five_prime_UTR	20573199	20573300	.	+	.	Parent=Os08t0427700-00
Chr08	irgsp1_rep	CDS	20573301	20573489	.	+	0	Parent=Os08t0427700-00
Chr08	irgsp1_rep	CDS	20573587	20573802	.	+	0	Parent=Os08t0427700-00
Chr08	irgsp1_rep	three_prime_UTR	20573803	20573985	.	+	.	Parent=Os08t0427700-00
Chr08	irgsp1_rep	mRNA	20578141	20578677	.	+	.	ID=Os08t0427800-00;Name=Os08t0427800-00;Locus_id=Os08g0427800;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7EY70 (UniProt);TENOR=Os08t0427800-00
Chr08	irgsp1_rep	CDS	20578141	20578366	.	+	0	Parent=Os08t0427800-00
Chr08	irgsp1_rep	CDS	20578613	20578677	.	+	2	Parent=Os08t0427800-00
Chr08	irgsp1_rep	mRNA	20578999	20583495	.	-	.	ID=Os08t0427900-01;Name=Os08t0427900-01;Locus_id=Os08g0427900;Note=Similar to Hin19 (Fragment).;Transcript_evidence=AK103217 (DDBJ%2C Best hit);ORF_evidence=B9G106 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033122N19;Expression=AK103217;TENOR=Os08t0427900-01;KEGG=Os08t0427900-01
Chr08	irgsp1_rep	five_prime_UTR	20583347	20583495	.	-	.	Parent=Os08t0427900-01
Chr08	irgsp1_rep	five_prime_UTR	20583113	20583189	.	-	.	Parent=Os08t0427900-01
Chr08	irgsp1_rep	CDS	20582927	20583112	.	-	0	Parent=Os08t0427900-01
Chr08	irgsp1_rep	CDS	20581807	20581941	.	-	0	Parent=Os08t0427900-01
Chr08	irgsp1_rep	CDS	20581644	20581712	.	-	0	Parent=Os08t0427900-01
Chr08	irgsp1_rep	CDS	20580723	20580913	.	-	0	Parent=Os08t0427900-01
Chr08	irgsp1_rep	CDS	20580026	20580082	.	-	1	Parent=Os08t0427900-01
Chr08	irgsp1_rep	CDS	20579309	20579531	.	-	1	Parent=Os08t0427900-01
Chr08	irgsp1_rep	three_prime_UTR	20578999	20579308	.	-	.	Parent=Os08t0427900-01
Chr08	irgsp1_rep	mRNA	20582866	20583495	.	-	.	ID=Os08t0427900-02;Name=Os08t0427900-02;Locus_id=Os08g0427900;Note=Hypothetical conserved gene.;Transcript_evidence=AK109208 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-156-C11;Expression=AK109208;TENOR=Os08t0427900-02;KEGG=Os08t0427900-02
Chr08	irgsp1_rep	five_prime_UTR	20583347	20583495	.	-	.	Parent=Os08t0427900-02
Chr08	irgsp1_rep	five_prime_UTR	20583113	20583189	.	-	.	Parent=Os08t0427900-02
Chr08	irgsp1_rep	CDS	20582873	20583112	.	-	0	Parent=Os08t0427900-02
Chr08	irgsp1_rep	three_prime_UTR	20582866	20582872	.	-	.	Parent=Os08t0427900-02
Chr08	irgsp1_rep	mRNA	20591379	20596200	.	+	.	ID=Os08t0428100-00;Name=Os08t0428100-00;Locus_id=Os08g0428100;Oryzabase Gene Symbol Synonym(s)=OsFbox445%2C Os_F0550;Oryzabase Gene Name Synonym(s)=F-box protein 445;Note=Hypothetical conserved gene.;Transcript_evidence=BT065714 (DDBJ);ORF_evidence=Q7EY67 (UniProt);InterPro=Leucine-rich repeat%2C cysteine-containing subtype (IPR006553);Oryzabase=17215;TENOR=Os08t0428100-00;KEGG=Os08t0428100-00
Chr08	irgsp1_rep	CDS	20591379	20591867	.	+	0	Parent=Os08t0428100-00
Chr08	irgsp1_rep	CDS	20594937	20595317	.	+	0	Parent=Os08t0428100-00
Chr08	irgsp1_rep	three_prime_UTR	20595318	20596200	.	+	.	Parent=Os08t0428100-00
Chr08	irgsp1_rep	mRNA	20601638	20601971	.	+	.	ID=Os08t0428200-01;Name=Os08t0428200-01;Locus_id=Os08g0428200;Note=Similar to Myb51 protein.;Transcript_evidence=AK242347 (DDBJ%2C Best hit);ORF_evidence=Q8H0P2 (UniProt);NIAS_FLcDNA=J080013G18;TENOR=Os08t0428200-01;KEGG=Os08t0428200-01
Chr08	irgsp1_rep	five_prime_UTR	20601638	20601639	.	+	.	Parent=Os08t0428200-01
Chr08	irgsp1_rep	CDS	20601640	20601795	.	+	0	Parent=Os08t0428200-01
Chr08	irgsp1_rep	three_prime_UTR	20601796	20601971	.	+	.	Parent=Os08t0428200-01
Chr08	irgsp1_rep	mRNA	20618998	20622780	.	-	.	ID=Os08t0428300-01;Name=Os08t0428300-01;Locus_id=Os08g0428300;Note=Similar to RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein%2C expressed.;Transcript_evidence=AK120663 (DDBJ%2C Best hit);ORF_evidence=Q10MU3 (UniProt);NIAS_FLcDNA=J013159E24;TENOR=Os08t0428300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	20620123	20622780	.	-	.	Parent=Os08t0428300-01
Chr08	irgsp1_rep	CDS	20619940	20620122	.	-	0	Parent=Os08t0428300-01
Chr08	irgsp1_rep	three_prime_UTR	20619501	20619939	.	-	.	Parent=Os08t0428300-01
Chr08	irgsp1_rep	three_prime_UTR	20618998	20619374	.	-	.	Parent=Os08t0428300-01
Chr08	irgsp1_rep	mRNA	20625115	20627940	.	-	.	ID=Os08t0428400-01;Name=Os08t0428400-01;Locus_id=Os08g0428400;CGSNL Gene Symbol=TIFY6A;CGSNL Gene Name=TIFY GENE 6A;Oryzabase Gene Symbol Synonym(s)=OsJAZ9%2C OsJAZ 3%2C OsJAZ3%2C JAZ9%2C JAZ3%2C OsTIFY6a;Oryzabase Gene Name Synonym(s)=Jasmonate ZIM-domain protein 9%2C Jasmonate ZIM-domain protein 3%2C Jasmonate Zim-Domain3;Note=Tify domain containing protein.;Transcript_evidence=AK103459 (DDBJ%2C Best hit);ORF_evidence=A2YVF1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Tify (IPR010399),CO/COL/TOC1%2C conserved site (IPR018467);NIAS_FLcDNA=J033129L12;Oryzabase=9495;Expression=AK103459;TENOR=Os08t0428400-01;KEGG=Os08t0428400-01
Chr08	irgsp1_rep	five_prime_UTR	20627802	20627940	.	-	.	Parent=Os08t0428400-01
Chr08	irgsp1_rep	CDS	20627732	20627801	.	-	0	Parent=Os08t0428400-01
Chr08	irgsp1_rep	CDS	20627048	20627280	.	-	2	Parent=Os08t0428400-01
Chr08	irgsp1_rep	CDS	20626693	20626967	.	-	0	Parent=Os08t0428400-01
Chr08	irgsp1_rep	CDS	20626494	20626578	.	-	1	Parent=Os08t0428400-01
Chr08	irgsp1_rep	CDS	20626048	20626405	.	-	0	Parent=Os08t0428400-01
Chr08	irgsp1_rep	CDS	20625868	20625925	.	-	2	Parent=Os08t0428400-01
Chr08	irgsp1_rep	CDS	20625560	20625764	.	-	1	Parent=Os08t0428400-01
Chr08	irgsp1_rep	three_prime_UTR	20625115	20625559	.	-	.	Parent=Os08t0428400-01
Chr08	irgsp1_rep	mRNA	20624908	20626218	.	-	.	ID=Os08t0428400-02;Name=Os08t0428400-02;Locus_id=Os08g0428400;CGSNL Gene Symbol=TIFY6A;CGSNL Gene Name=TIFY GENE 6A;Oryzabase Gene Symbol Synonym(s)=OsJAZ9%2C OsJAZ 3%2C OsJAZ3%2C JAZ9%2C JAZ3%2C OsTIFY6a;Oryzabase Gene Name Synonym(s)=Jasmonate ZIM-domain protein 9%2C Jasmonate ZIM-domain protein 3%2C Jasmonate Zim-Domain3;Note=Similar to ZIM motif family protein.;Transcript_evidence=AK060047 (DDBJ%2C Best hit);ORF_evidence=NP_001151534.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=CO/COL/TOC1%2C conserved site (IPR018467);NIAS_FLcDNA=006-304-H06;Oryzabase=9495;Expression=AK060047;TENOR=Os08t0428400-02;KEGG=Os08t0428400-02
Chr08	irgsp1_rep	five_prime_UTR	20626217	20626218	.	-	.	Parent=Os08t0428400-02
Chr08	irgsp1_rep	CDS	20626048	20626216	.	-	0	Parent=Os08t0428400-02
Chr08	irgsp1_rep	CDS	20625868	20625925	.	-	2	Parent=Os08t0428400-02
Chr08	irgsp1_rep	CDS	20625560	20625764	.	-	1	Parent=Os08t0428400-02
Chr08	irgsp1_rep	three_prime_UTR	20624908	20625559	.	-	.	Parent=Os08t0428400-02
Chr08	irgsp1_rep	mRNA	20657025	20658055	.	-	.	ID=Os08t0428800-00;Name=Os08t0428800-00;Locus_id=Os08g0428800;Note=Similar to High mobility group I/Y-2.;Transcript_evidence=EU963599 (DDBJ);ORF_evidence=NP_001105009.1 (RefSeq);GO=Biological Process: nucleosome assembly (GO:0006334),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: Chromatin (GO:0000785),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=High mobility group%2C HMG-I/HMG-Y (IPR000116),Histone H1/H5 (IPR005818),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),AT hook%2C DNA-binding motif (IPR017956),AT hook-like (IPR020478);TENOR=Os08t0428800-00;KEGG=Os08t0428800-00
Chr08	irgsp1_rep	five_prime_UTR	20657934	20658055	.	-	.	Parent=Os08t0428800-00
Chr08	irgsp1_rep	CDS	20657880	20657933	.	-	0	Parent=Os08t0428800-00
Chr08	irgsp1_rep	CDS	20657329	20657811	.	-	0	Parent=Os08t0428800-00
Chr08	irgsp1_rep	three_prime_UTR	20657025	20657328	.	-	.	Parent=Os08t0428800-00
Chr08	irgsp1_rep	mRNA	20666240	20673557	.	-	.	ID=Os08t0428900-01;Name=Os08t0428900-01;Locus_id=Os08g0428900;Note=Chaperonin Cpn60/TCP-1 family protein.;Transcript_evidence=AK120080 (DDBJ%2C Best hit);ORF_evidence=A3BTC2 (UniProt);GO=Biological Process: cellular protein metabolic process (GO:0044267),Biological Process: phosphatidylinositol metabolic process (GO:0046488),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphatidylinositol phosphate kinase activity (GO:0016307);InterPro=Chaperonin Cpn60/TCP-1 (IPR002423),Phosphatidylinositol-4-phosphate 5-kinase%2C core (IPR002498);NIAS_FLcDNA=J013012I05;Expression=AK120080;TENOR=Os08t0428900-01;KEGG=Os08t0428900-01 (EC:2.7.1.68)
Chr08	irgsp1_rep	five_prime_UTR	20673209	20673557	.	-	.	Parent=Os08t0428900-01
Chr08	irgsp1_rep	CDS	20672940	20673208	.	-	0	Parent=Os08t0428900-01
Chr08	irgsp1_rep	CDS	20671668	20672384	.	-	1	Parent=Os08t0428900-01
Chr08	irgsp1_rep	CDS	20671428	20671581	.	-	1	Parent=Os08t0428900-01
Chr08	irgsp1_rep	CDS	20671013	20671351	.	-	0	Parent=Os08t0428900-01
Chr08	irgsp1_rep	CDS	20669815	20670624	.	-	0	Parent=Os08t0428900-01
Chr08	irgsp1_rep	CDS	20669396	20669727	.	-	0	Parent=Os08t0428900-01
Chr08	irgsp1_rep	CDS	20669189	20669315	.	-	1	Parent=Os08t0428900-01
Chr08	irgsp1_rep	CDS	20668918	20669076	.	-	0	Parent=Os08t0428900-01
Chr08	irgsp1_rep	CDS	20667344	20668816	.	-	0	Parent=Os08t0428900-01
Chr08	irgsp1_rep	CDS	20666989	20667246	.	-	0	Parent=Os08t0428900-01
Chr08	irgsp1_rep	CDS	20666567	20666821	.	-	0	Parent=Os08t0428900-01
Chr08	irgsp1_rep	three_prime_UTR	20666240	20666566	.	-	.	Parent=Os08t0428900-01
Chr08	irgsp1_rep	mRNA	20698420	20699009	.	-	.	ID=Os08t0429200-01;Name=Os08t0429200-01;Locus_id=Os08g0429200;Note=Non-protein coding transcript.;Transcript_evidence=AK062329 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-101-D07;TENOR=Os08t0429200-01
Chr08	irgsp1_rep	exon	20698420	20699009	.	-	.	Parent=Os08t0429200-01
Chr08	irgsp1_rep	mRNA	20702501	20703099	.	+	.	ID=Os08t0429225-00;Name=Os08t0429225-00;Locus_id=Os08g0429225;Note=Hypothetical protein.;Transcript_evidence=BT086454 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0429225-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	20702501	20702820	.	+	.	Parent=Os08t0429225-00
Chr08	irgsp1_rep	CDS	20702821	20703099	.	+	0	Parent=Os08t0429225-00
Chr08	irgsp1_rep	mRNA	20761382	20764018	.	-	.	ID=Os08t0429800-00;Name=Os08t0429800-00;Locus_id=Os08g0429800;Oryzabase Gene Symbol Synonym(s)=CYP735A3;Oryzabase Gene Name Synonym(s)=cytoChrome 450 735A3;Note=Hypothetical conserved gene.;Transcript_evidence=BT055890 (DDBJ);ORF_evidence=XP_002329282.1 (RefSeq);Oryzabase=9844;TENOR=Os08t0429800-00;KEGG=Os08t0429800-00
Chr08	irgsp1_rep	CDS	20763253	20764018	.	-	0	Parent=Os08t0429800-00
Chr08	irgsp1_rep	CDS	20762927	20763168	.	-	2	Parent=Os08t0429800-00
Chr08	irgsp1_rep	CDS	20761382	20762377	.	-	0	Parent=Os08t0429800-00
Chr08	irgsp1_rep	mRNA	20765701	20766437	.	-	.	ID=Os08t0429901-00;Name=Os08t0429901-00;Locus_id=Os08g0429901;Note=Non-protein coding transcript.;Transcript_evidence=CT835950 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os08t0429901-00
Chr08	irgsp1_rep	exon	20765701	20766437	.	-	.	Parent=Os08t0429901-00
Chr08	irgsp1_rep	mRNA	20776099	20782389	.	-	.	ID=Os08t0430000-01;Name=Os08t0430000-01;Locus_id=Os08g0430000;Note=Conserved hypothetical protein.;Transcript_evidence=AK120950 (DDBJ%2C Best hit);ORF_evidence=B9G111 (UniProt);NIAS_FLcDNA=J023038L09;Expression=AK120950;TENOR=Os08t0430000-01;KEGG=Os08t0430000-01
Chr08	irgsp1_rep	five_prime_UTR	20781921	20782389	.	-	.	Parent=Os08t0430000-01
Chr08	irgsp1_rep	CDS	20781896	20781920	.	-	0	Parent=Os08t0430000-01
Chr08	irgsp1_rep	CDS	20781099	20781193	.	-	2	Parent=Os08t0430000-01
Chr08	irgsp1_rep	CDS	20780598	20780942	.	-	0	Parent=Os08t0430000-01
Chr08	irgsp1_rep	CDS	20777890	20780504	.	-	0	Parent=Os08t0430000-01
Chr08	irgsp1_rep	CDS	20776465	20777776	.	-	1	Parent=Os08t0430000-01
Chr08	irgsp1_rep	three_prime_UTR	20776099	20776464	.	-	.	Parent=Os08t0430000-01
Chr08	irgsp1_rep	mRNA	20777485	20779688	.	-	.	ID=Os08t0430000-02;Name=Os08t0430000-02;Locus_id=Os08g0430000;Note=Hypothetical conserved gene.;Transcript_evidence=AK068194 (DDBJ%2C Best hit);ORF_evidence=B9G111 (UniProt);NIAS_FLcDNA=J013139I18;Expression=AK068194;TENOR=Os08t0430000-02;KEGG=Os08t0430000-02
Chr08	irgsp1_rep	CDS	20777890	20779688	.	-	0	Parent=Os08t0430000-02
Chr08	irgsp1_rep	CDS	20777485	20777776	.	-	1	Parent=Os08t0430000-02
Chr08	irgsp1_rep	mRNA	20781931	20787248	.	+	.	ID=Os08t0430050-01;Name=Os08t0430050-01;Locus_id=Os08g0430050;Note=Conserved hypothetical protein.;Transcript_evidence=AK288852 (DDBJ%2C Best hit);ORF_evidence=C8TFB7 (UniProt);NIAS_FLcDNA=J090075M07;TENOR=Os08t0430050-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	20781931	20787073	.	+	.	Parent=Os08t0430050-01
Chr08	irgsp1_rep	CDS	20787074	20787205	.	+	0	Parent=Os08t0430050-01
Chr08	irgsp1_rep	three_prime_UTR	20787206	20787248	.	+	.	Parent=Os08t0430050-01
Chr08	irgsp1_rep	mRNA	20790427	20794614	.	+	.	ID=Os08t0430100-01;Name=Os08t0430100-01;Locus_id=Os08g0430100;Note=Similar to Myosin-like protein.;Transcript_evidence=AK070561 (DDBJ%2C Best hit);ORF_evidence=B6T731 (UniProt);NIAS_FLcDNA=J023061G06;Expression=AK070561;TENOR=Os08t0430100-01;KEGG=Os08t0430100-01
Chr08	irgsp1_rep	five_prime_UTR	20790427	20790742	.	+	.	Parent=Os08t0430100-01
Chr08	irgsp1_rep	five_prime_UTR	20793188	20793195	.	+	.	Parent=Os08t0430100-01
Chr08	irgsp1_rep	CDS	20793196	20793716	.	+	0	Parent=Os08t0430100-01
Chr08	irgsp1_rep	CDS	20793930	20794063	.	+	1	Parent=Os08t0430100-01
Chr08	irgsp1_rep	CDS	20794147	20794298	.	+	2	Parent=Os08t0430100-01
Chr08	irgsp1_rep	three_prime_UTR	20794299	20794614	.	+	.	Parent=Os08t0430100-01
Chr08	irgsp1_rep	mRNA	20797021	20801654	.	+	.	ID=Os08t0430200-01;Name=Os08t0430200-01;Locus_id=Os08g0430200;Oryzabase Gene Symbol Synonym(s)=RAD23;Oryzabase Gene Name Synonym(s)=RAD23 DNA repair protein;Note=UV excision repair protein Rad23 family protein.;Transcript_evidence=AK064881 (DDBJ%2C Best hit);ORF_evidence=B4FQ07 (UniProt);GO=Biological Process: nucleotide-excision repair (GO:0006289),Biological Process: proteasomal ubiquitin-dependent protein catabolic process (GO:0043161),Cellular Component: nucleus (GO:0005634),Molecular Function: damaged DNA binding (GO:0003684),Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal (IPR000449),Ubiquitin (IPR000626),UV excision repair protein Rad23 (IPR004806),Heat shock chaperonin-binding (IPR006636),UBA-like (IPR009060),XPC-binding domain (IPR015360),Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (IPR015940),Ubiquitin supergroup (IPR019955);NIAS_FLcDNA=J013000J24;Oryzabase=20432;Expression=AK064881;TENOR=Os08t0430200-01;KEGG=Os08t0430200-01
Chr08	irgsp1_rep	five_prime_UTR	20797021	20797083	.	+	.	Parent=Os08t0430200-01
Chr08	irgsp1_rep	CDS	20797084	20797149	.	+	0	Parent=Os08t0430200-01
Chr08	irgsp1_rep	CDS	20798393	20798554	.	+	0	Parent=Os08t0430200-01
Chr08	irgsp1_rep	CDS	20798757	20798807	.	+	0	Parent=Os08t0430200-01
Chr08	irgsp1_rep	CDS	20799337	20799401	.	+	0	Parent=Os08t0430200-01
Chr08	irgsp1_rep	CDS	20799626	20799700	.	+	1	Parent=Os08t0430200-01
Chr08	irgsp1_rep	CDS	20799844	20800021	.	+	1	Parent=Os08t0430200-01
Chr08	irgsp1_rep	CDS	20800412	20800594	.	+	0	Parent=Os08t0430200-01
Chr08	irgsp1_rep	CDS	20800677	20800790	.	+	0	Parent=Os08t0430200-01
Chr08	irgsp1_rep	CDS	20800868	20800977	.	+	0	Parent=Os08t0430200-01
Chr08	irgsp1_rep	CDS	20801067	20801145	.	+	1	Parent=Os08t0430200-01
Chr08	irgsp1_rep	CDS	20801276	20801413	.	+	0	Parent=Os08t0430200-01
Chr08	irgsp1_rep	three_prime_UTR	20801414	20801654	.	+	.	Parent=Os08t0430200-01
Chr08	irgsp1_rep	mRNA	20800869	20801708	.	+	.	ID=Os08t0430200-02;Name=Os08t0430200-02;Locus_id=Os08g0430200;Oryzabase Gene Symbol Synonym(s)=RAD23;Oryzabase Gene Name Synonym(s)=RAD23 DNA repair protein;Note=Similar to DNA repair protein RAD23.;Transcript_evidence=AK063768 (DDBJ%2C Best hit);ORF_evidence=B6T711 (UniProt);GO=Biological Process: nucleotide-excision repair (GO:0006289),Biological Process: proteasomal ubiquitin-dependent protein catabolic process (GO:0043161),Cellular Component: nucleus (GO:0005634),Molecular Function: damaged DNA binding (GO:0003684),Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal (IPR000449),UV excision repair protein Rad23 (IPR004806),UBA-like (IPR009060),XPC-binding domain (IPR015360),Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (IPR015940);NIAS_FLcDNA=001-121-B09;Oryzabase=20432;Expression=AK063768;TENOR=Os08t0430200-02;KEGG=Os08t0430200-02
Chr08	irgsp1_rep	five_prime_UTR	20800869	20800870	.	+	.	Parent=Os08t0430200-02
Chr08	irgsp1_rep	CDS	20800871	20800977	.	+	0	Parent=Os08t0430200-02
Chr08	irgsp1_rep	CDS	20801067	20801145	.	+	1	Parent=Os08t0430200-02
Chr08	irgsp1_rep	CDS	20801276	20801413	.	+	0	Parent=Os08t0430200-02
Chr08	irgsp1_rep	three_prime_UTR	20801414	20801708	.	+	.	Parent=Os08t0430200-02
Chr08	irgsp1_rep	mRNA	20802532	20805096	.	-	.	ID=Os08t0430300-01;Name=Os08t0430300-01;Locus_id=Os08g0430300;Note=Conserved hypothetical protein.;Transcript_evidence=AK101754 (DDBJ%2C Best hit);ORF_evidence=A3BTC9 (UniProt);NIAS_FLcDNA=J033063J16;TENOR=Os08t0430300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	20804135	20805096	.	-	.	Parent=Os08t0430300-01
Chr08	irgsp1_rep	CDS	20804129	20804134	.	-	0	Parent=Os08t0430300-01
Chr08	irgsp1_rep	CDS	20803740	20803825	.	-	0	Parent=Os08t0430300-01
Chr08	irgsp1_rep	CDS	20803556	20803646	.	-	1	Parent=Os08t0430300-01
Chr08	irgsp1_rep	CDS	20803239	20803324	.	-	0	Parent=Os08t0430300-01
Chr08	irgsp1_rep	CDS	20802837	20803134	.	-	1	Parent=Os08t0430300-01
Chr08	irgsp1_rep	three_prime_UTR	20802532	20802836	.	-	.	Parent=Os08t0430300-01
Chr08	irgsp1_rep	mRNA	20812586	20815627	.	-	.	ID=Os08t0430500-01;Name=Os08t0430500-01;Locus_id=Os08g0430500;RAP-DB Gene Symbol Synonym(s)=GF14C%2C GF14c%2C OsGF14c;RAP-DB Gene Name Synonym(s)=G-BOX FACTOR 14-3-3C PROTEIN%2C G-box factor 14-3-3c protein;CGSNL Gene Symbol=GF14C;CGSNL Gene Name=G-BOX FACTOR 14-3-3C PROTEIN;Oryzabase Gene Symbol Synonym(s)=GF14c%2C OsGF14c%2C 14-3-3c;Oryzabase Gene Name Synonym(s)=G-box factor 14-3-3c protein;Note=14-3-3 protein%2C Florigen receptor%2C Flowering;Transcript_evidence=AK122149,AK243044,AK065266;ORF_evidence=Q6ZKC0;GO=Molecular Function: protein domain specific binding (GO:0019904);InterPro=14-3-3 protein (IPR000308),14-3-3 domain (IPR023410),14-3-3 protein%2C conserved site (IPR023409);NIAS_FLcDNA=J033138L07,J013002K15,J100009B14;Manual Curation=December 2%2C 2014;Literature_PMID=21804566,19179350;Oryzabase=11408;TENOR=Os08t0430500-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	20815557	20815627	.	-	.	Parent=Os08t0430500-01
Chr08	irgsp1_rep	five_prime_UTR	20814500	20814519	.	-	.	Parent=Os08t0430500-01
Chr08	irgsp1_rep	CDS	20814108	20814499	.	-	0	Parent=Os08t0430500-01
Chr08	irgsp1_rep	CDS	20813941	20814019	.	-	1	Parent=Os08t0430500-01
Chr08	irgsp1_rep	CDS	20813635	20813757	.	-	0	Parent=Os08t0430500-01
Chr08	irgsp1_rep	CDS	20813066	20813182	.	-	0	Parent=Os08t0430500-01
Chr08	irgsp1_rep	CDS	20812913	20812972	.	-	0	Parent=Os08t0430500-01
Chr08	irgsp1_rep	three_prime_UTR	20812586	20812912	.	-	.	Parent=Os08t0430500-01
Chr08	irgsp1_rep	mRNA	20812607	20815511	.	-	.	ID=Os08t0430500-02;Name=Os08t0430500-02;Locus_id=Os08g0430500;CGSNL Gene Symbol=GF14C;CGSNL Gene Name=G-BOX FACTOR 14-3-3C PROTEIN;Oryzabase Gene Symbol Synonym(s)=GF14c%2C OsGF14c%2C 14-3-3c;Oryzabase Gene Name Synonym(s)=G-box factor 14-3-3c protein;Note=Similar to 14-3-3-like protein S94.;Transcript_evidence=AK070230 (DDBJ%2C Best hit);ORF_evidence=Q6ZKC0 (UniProt);GO=Molecular Function: protein domain specific binding (GO:0019904);InterPro=14-3-3 protein (IPR000308),14-3-3 protein%2C conserved site (IPR023409),14-3-3 domain (IPR023410);NIAS_FLcDNA=J023041F18;Oryzabase=11408;TENOR=Os08t0430500-02;KEGG=Os08t0430500-02
Chr08	irgsp1_rep	five_prime_UTR	20814500	20815511	.	-	.	Parent=Os08t0430500-02
Chr08	irgsp1_rep	CDS	20814108	20814499	.	-	0	Parent=Os08t0430500-02
Chr08	irgsp1_rep	CDS	20813941	20814019	.	-	1	Parent=Os08t0430500-02
Chr08	irgsp1_rep	CDS	20813635	20813757	.	-	0	Parent=Os08t0430500-02
Chr08	irgsp1_rep	CDS	20813066	20813182	.	-	0	Parent=Os08t0430500-02
Chr08	irgsp1_rep	CDS	20812913	20812972	.	-	0	Parent=Os08t0430500-02
Chr08	irgsp1_rep	three_prime_UTR	20812607	20812912	.	-	.	Parent=Os08t0430500-02
Chr08	irgsp1_rep	mRNA	20812503	20814404	.	-	.	ID=Os08t0430500-03;Name=Os08t0430500-03;Locus_id=Os08g0430500;CGSNL Gene Symbol=GF14C;CGSNL Gene Name=G-BOX FACTOR 14-3-3C PROTEIN;Oryzabase Gene Symbol Synonym(s)=GF14c%2C OsGF14c%2C 14-3-3c;Oryzabase Gene Name Synonym(s)=G-box factor 14-3-3c protein;Note=Similar to 14-3-3-like protein GF14-C.;Transcript_evidence=AK061786 (DDBJ%2C Best hit);ORF_evidence=Q6ZKC0 (UniProt);GO=Molecular Function: protein domain specific binding (GO:0019904);InterPro=14-3-3 protein (IPR000308),14-3-3 protein%2C conserved site (IPR023409),14-3-3 domain (IPR023410);NIAS_FLcDNA=001-039-E09;Oryzabase=11408;TENOR=Os08t0430500-03;KEGG=Os08t0430500-03
Chr08	irgsp1_rep	five_prime_UTR	20814404	20814404	.	-	.	Parent=Os08t0430500-03
Chr08	irgsp1_rep	CDS	20814108	20814403	.	-	0	Parent=Os08t0430500-03
Chr08	irgsp1_rep	CDS	20813941	20814019	.	-	1	Parent=Os08t0430500-03
Chr08	irgsp1_rep	CDS	20813635	20813757	.	-	0	Parent=Os08t0430500-03
Chr08	irgsp1_rep	CDS	20813066	20813182	.	-	0	Parent=Os08t0430500-03
Chr08	irgsp1_rep	CDS	20812913	20812972	.	-	0	Parent=Os08t0430500-03
Chr08	irgsp1_rep	three_prime_UTR	20812503	20812912	.	-	.	Parent=Os08t0430500-03
Chr08	irgsp1_rep	mRNA	20813065	20814496	.	+	.	ID=Os08t0430550-00;Name=Os08t0430550-00;Locus_id=Os08g0430550;Note=Non-protein coding transcript.;Transcript_evidence=BT017754 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0430550-00
Chr08	irgsp1_rep	exon	20813065	20813194	.	+	.	Parent=Os08t0430550-00
Chr08	irgsp1_rep	exon	20813647	20813756	.	+	.	Parent=Os08t0430550-00
Chr08	irgsp1_rep	exon	20813940	20814017	.	+	.	Parent=Os08t0430550-00
Chr08	irgsp1_rep	exon	20814106	20814496	.	+	.	Parent=Os08t0430550-00
Chr08	irgsp1_rep	mRNA	20817234	20820444	.	-	.	ID=Os08t0430600-01;Name=Os08t0430600-01;Locus_id=Os08g0430600;Note=Similar to Threonine endopeptidase.;Transcript_evidence=AK060045 (DDBJ%2C Best hit);ORF_evidence=B6SNJ7 (UniProt);NIAS_FLcDNA=006-304-G06;Expression=AK060045;TENOR=Os08t0430600-01;KEGG=Os08t0430600-01
Chr08	irgsp1_rep	five_prime_UTR	20820329	20820444	.	-	.	Parent=Os08t0430600-01
Chr08	irgsp1_rep	five_prime_UTR	20820204	20820230	.	-	.	Parent=Os08t0430600-01
Chr08	irgsp1_rep	CDS	20820074	20820203	.	-	0	Parent=Os08t0430600-01
Chr08	irgsp1_rep	CDS	20818567	20818667	.	-	2	Parent=Os08t0430600-01
Chr08	irgsp1_rep	CDS	20818386	20818493	.	-	0	Parent=Os08t0430600-01
Chr08	irgsp1_rep	CDS	20818206	20818277	.	-	0	Parent=Os08t0430600-01
Chr08	irgsp1_rep	CDS	20817690	20817758	.	-	0	Parent=Os08t0430600-01
Chr08	irgsp1_rep	three_prime_UTR	20817234	20817689	.	-	.	Parent=Os08t0430600-01
Chr08	irgsp1_rep	mRNA	20817346	20820418	.	-	.	ID=Os08t0430600-02;Name=Os08t0430600-02;Locus_id=Os08g0430600;Note=Similar to Threonine endopeptidase.;Transcript_evidence=AK068922 (DDBJ%2C Best hit);ORF_evidence=B6SNJ7 (UniProt);NIAS_FLcDNA=J013170B19;Expression=AK068922;TENOR=Os08t0430600-02;KEGG=Os08t0430600-02
Chr08	irgsp1_rep	five_prime_UTR	20820204	20820418	.	-	.	Parent=Os08t0430600-02
Chr08	irgsp1_rep	CDS	20820074	20820203	.	-	0	Parent=Os08t0430600-02
Chr08	irgsp1_rep	CDS	20818567	20818667	.	-	2	Parent=Os08t0430600-02
Chr08	irgsp1_rep	CDS	20818386	20818493	.	-	0	Parent=Os08t0430600-02
Chr08	irgsp1_rep	CDS	20818206	20818277	.	-	0	Parent=Os08t0430600-02
Chr08	irgsp1_rep	CDS	20817690	20817758	.	-	0	Parent=Os08t0430600-02
Chr08	irgsp1_rep	three_prime_UTR	20817346	20817689	.	-	.	Parent=Os08t0430600-02
Chr08	irgsp1_rep	mRNA	20821174	20824888	.	-	.	ID=Os08t0430700-01;Name=Os08t0430700-01;Locus_id=Os08g0430700;Note=Similar to UVB-resistance protein-like.;Transcript_evidence=AK102785 (DDBJ%2C Best hit);ORF_evidence=B8BB04 (UniProt);InterPro=Regulator of Chromosome condensation%2C RCC1 (IPR000408),Regulator of Chromosome condensation/beta-lactamase-inhibitor protein II (IPR009091);NIAS_FLcDNA=J033107K23;Expression=AK102785;TENOR=Os08t0430700-01;KEGG=Os08t0430700-01
Chr08	irgsp1_rep	five_prime_UTR	20824765	20824888	.	-	.	Parent=Os08t0430700-01
Chr08	irgsp1_rep	CDS	20824718	20824764	.	-	0	Parent=Os08t0430700-01
Chr08	irgsp1_rep	CDS	20824480	20824624	.	-	1	Parent=Os08t0430700-01
Chr08	irgsp1_rep	CDS	20824278	20824388	.	-	0	Parent=Os08t0430700-01
Chr08	irgsp1_rep	CDS	20824121	20824181	.	-	0	Parent=Os08t0430700-01
Chr08	irgsp1_rep	CDS	20823896	20824014	.	-	2	Parent=Os08t0430700-01
Chr08	irgsp1_rep	CDS	20823250	20823335	.	-	0	Parent=Os08t0430700-01
Chr08	irgsp1_rep	CDS	20822972	20823173	.	-	1	Parent=Os08t0430700-01
Chr08	irgsp1_rep	CDS	20822532	20822585	.	-	0	Parent=Os08t0430700-01
Chr08	irgsp1_rep	CDS	20822288	20822398	.	-	0	Parent=Os08t0430700-01
Chr08	irgsp1_rep	CDS	20822150	20822206	.	-	0	Parent=Os08t0430700-01
Chr08	irgsp1_rep	CDS	20821315	20821509	.	-	0	Parent=Os08t0430700-01
Chr08	irgsp1_rep	three_prime_UTR	20821174	20821314	.	-	.	Parent=Os08t0430700-01
Chr08	irgsp1_rep	mRNA	20820938	20824841	.	-	.	ID=Os08t0430700-02;Name=Os08t0430700-02;Locus_id=Os08g0430700;Note=Similar to UVB-resistance protein-like.;Transcript_evidence=AK101681 (DDBJ%2C Best hit);ORF_evidence=B8BB04 (UniProt);InterPro=Regulator of Chromosome condensation%2C RCC1 (IPR000408),Regulator of Chromosome condensation/beta-lactamase-inhibitor protein II (IPR009091);NIAS_FLcDNA=J033058K22;Expression=AK101681;TENOR=Os08t0430700-02;KEGG=Os08t0430700-02
Chr08	irgsp1_rep	five_prime_UTR	20824765	20824841	.	-	.	Parent=Os08t0430700-02
Chr08	irgsp1_rep	CDS	20824718	20824764	.	-	0	Parent=Os08t0430700-02
Chr08	irgsp1_rep	CDS	20824480	20824624	.	-	1	Parent=Os08t0430700-02
Chr08	irgsp1_rep	CDS	20824278	20824388	.	-	0	Parent=Os08t0430700-02
Chr08	irgsp1_rep	CDS	20824121	20824181	.	-	0	Parent=Os08t0430700-02
Chr08	irgsp1_rep	CDS	20823896	20824014	.	-	2	Parent=Os08t0430700-02
Chr08	irgsp1_rep	CDS	20823250	20823335	.	-	0	Parent=Os08t0430700-02
Chr08	irgsp1_rep	CDS	20822972	20823173	.	-	1	Parent=Os08t0430700-02
Chr08	irgsp1_rep	CDS	20822532	20822585	.	-	0	Parent=Os08t0430700-02
Chr08	irgsp1_rep	CDS	20822288	20822398	.	-	0	Parent=Os08t0430700-02
Chr08	irgsp1_rep	CDS	20822150	20822206	.	-	0	Parent=Os08t0430700-02
Chr08	irgsp1_rep	CDS	20821315	20821509	.	-	0	Parent=Os08t0430700-02
Chr08	irgsp1_rep	three_prime_UTR	20820938	20821314	.	-	.	Parent=Os08t0430700-02
Chr08	irgsp1_rep	mRNA	20828249	20831259	.	+	.	ID=Os08t0430800-01;Name=Os08t0430800-01;Locus_id=Os08g0430800;Note=Conserved hypothetical protein.;Transcript_evidence=AK058598 (DDBJ%2C Best hit);ORF_evidence=B9G114 (UniProt);NIAS_FLcDNA=001-017-H05;TENOR=Os08t0430800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	20828249	20828385	.	+	.	Parent=Os08t0430800-01
Chr08	irgsp1_rep	five_prime_UTR	20829981	20830032	.	+	.	Parent=Os08t0430800-01
Chr08	irgsp1_rep	CDS	20830033	20830103	.	+	0	Parent=Os08t0430800-01
Chr08	irgsp1_rep	CDS	20830248	20830350	.	+	1	Parent=Os08t0430800-01
Chr08	irgsp1_rep	CDS	20830481	20830543	.	+	0	Parent=Os08t0430800-01
Chr08	irgsp1_rep	three_prime_UTR	20830544	20831259	.	+	.	Parent=Os08t0430800-01
Chr08	irgsp1_rep	mRNA	20828277	20831334	.	+	.	ID=Os08t0430800-02;Name=Os08t0430800-02;Locus_id=Os08g0430800;Note=Conserved hypothetical protein.;Transcript_evidence=AK069753 (DDBJ%2C Best hit);ORF_evidence=B9G114 (UniProt);NIAS_FLcDNA=J023031D24;TENOR=Os08t0430800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	20828277	20828278	.	+	.	Parent=Os08t0430800-02
Chr08	irgsp1_rep	CDS	20828279	20828385	.	+	0	Parent=Os08t0430800-02
Chr08	irgsp1_rep	CDS	20830248	20830350	.	+	1	Parent=Os08t0430800-02
Chr08	irgsp1_rep	CDS	20830481	20830543	.	+	0	Parent=Os08t0430800-02
Chr08	irgsp1_rep	three_prime_UTR	20830544	20831334	.	+	.	Parent=Os08t0430800-02
Chr08	irgsp1_rep	mRNA	20848026	20852923	.	+	.	ID=Os08t0431100-01;Name=Os08t0431100-01;Locus_id=Os08g0431100;Note=Bromo adjacent region domain containing protein.;Transcript_evidence=AK072110 (DDBJ%2C Best hit);ORF_evidence=Q6ZKB4 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: RNA binding (GO:0003723);InterPro=Bromo adjacent homology (BAH) domain (IPR001025),Agenet (IPR008395),Tudor-like%2C plant (IPR014002);NIAS_FLcDNA=J013119E16;Expression=AK072110;TENOR=Os08t0431100-01;KEGG=Os08t0431100-01
Chr08	irgsp1_rep	five_prime_UTR	20848026	20848125	.	+	.	Parent=Os08t0431100-01
Chr08	irgsp1_rep	CDS	20848126	20848522	.	+	0	Parent=Os08t0431100-01
Chr08	irgsp1_rep	CDS	20850178	20850266	.	+	2	Parent=Os08t0431100-01
Chr08	irgsp1_rep	CDS	20850373	20850498	.	+	0	Parent=Os08t0431100-01
Chr08	irgsp1_rep	CDS	20850858	20851574	.	+	0	Parent=Os08t0431100-01
Chr08	irgsp1_rep	CDS	20851661	20851871	.	+	0	Parent=Os08t0431100-01
Chr08	irgsp1_rep	CDS	20851980	20852494	.	+	2	Parent=Os08t0431100-01
Chr08	irgsp1_rep	three_prime_UTR	20852495	20852923	.	+	.	Parent=Os08t0431100-01
Chr08	irgsp1_rep	mRNA	20848388	20852941	.	+	.	ID=Os08t0431100-02;Name=Os08t0431100-02;Locus_id=Os08g0431100;Note=Bromo adjacent region domain containing protein.;Transcript_evidence=AK069476 (DDBJ%2C Best hit);ORF_evidence=Q6ZKB4 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: RNA binding (GO:0003723);InterPro=Bromo adjacent homology (BAH) domain (IPR001025),Agenet (IPR008395),Tudor-like%2C plant (IPR014002);NIAS_FLcDNA=J023019L14;Expression=AK069476;TENOR=Os08t0431100-02;KEGG=Os08t0431100-02
Chr08	irgsp1_rep	five_prime_UTR	20848388	20848389	.	+	.	Parent=Os08t0431100-02
Chr08	irgsp1_rep	CDS	20848390	20848522	.	+	0	Parent=Os08t0431100-02
Chr08	irgsp1_rep	CDS	20850178	20850266	.	+	2	Parent=Os08t0431100-02
Chr08	irgsp1_rep	CDS	20850373	20850498	.	+	0	Parent=Os08t0431100-02
Chr08	irgsp1_rep	CDS	20850858	20851574	.	+	0	Parent=Os08t0431100-02
Chr08	irgsp1_rep	CDS	20851661	20851871	.	+	0	Parent=Os08t0431100-02
Chr08	irgsp1_rep	CDS	20851980	20852494	.	+	2	Parent=Os08t0431100-02
Chr08	irgsp1_rep	three_prime_UTR	20852495	20852941	.	+	.	Parent=Os08t0431100-02
Chr08	irgsp1_rep	mRNA	20851336	20853007	.	+	.	ID=Os08t0431100-03;Name=Os08t0431100-03;Locus_id=Os08g0431100;Note=Hypothetical conserved gene.;Transcript_evidence=AK070049 (DDBJ%2C Best hit);ORF_evidence=Q6ZKB4 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=Agenet (IPR008395),Tudor-like%2C plant (IPR014002);NIAS_FLcDNA=J023038D22;Expression=AK070049;TENOR=Os08t0431100-03;KEGG=Os08t0431100-03
Chr08	irgsp1_rep	five_prime_UTR	20851336	20851337	.	+	.	Parent=Os08t0431100-03
Chr08	irgsp1_rep	CDS	20851338	20851574	.	+	0	Parent=Os08t0431100-03
Chr08	irgsp1_rep	CDS	20851661	20851871	.	+	0	Parent=Os08t0431100-03
Chr08	irgsp1_rep	CDS	20851980	20852494	.	+	2	Parent=Os08t0431100-03
Chr08	irgsp1_rep	three_prime_UTR	20852495	20853007	.	+	.	Parent=Os08t0431100-03
Chr08	irgsp1_rep	mRNA	20851681	20852939	.	+	.	ID=Os08t0431100-04;Name=Os08t0431100-04;Locus_id=Os08g0431100;Note=Hypothetical conserved gene.;Transcript_evidence=AK058831 (DDBJ%2C Best hit);ORF_evidence=Q6ZKB4 (UniProt);InterPro=Tudor-like%2C plant (IPR014002);NIAS_FLcDNA=001-004-A10;Expression=AK058831;TENOR=Os08t0431100-04;KEGG=Os08t0431100-04
Chr08	irgsp1_rep	five_prime_UTR	20851681	20851681	.	+	.	Parent=Os08t0431100-04
Chr08	irgsp1_rep	CDS	20851682	20851871	.	+	0	Parent=Os08t0431100-04
Chr08	irgsp1_rep	CDS	20851980	20852494	.	+	2	Parent=Os08t0431100-04
Chr08	irgsp1_rep	three_prime_UTR	20852495	20852939	.	+	.	Parent=Os08t0431100-04
Chr08	irgsp1_rep	mRNA	20855158	20858415	.	+	.	ID=Os08t0431200-00;Name=Os08t0431200-00;Locus_id=Os08g0431200;Oryzabase Gene Symbol Synonym(s)=OsFH9%2C FH9;Oryzabase Gene Name Synonym(s)=formin homology 9%2C forming family protein 9%2C FH2 protein 9%2C FH2 domain protein 9;Note=Similar to Formin-like protein 9.;Transcript_evidence=CT835937 (DDBJ%2C Best hit);ORF_evidence=Q6ZKB2 (UniProt);InterPro=Actin-binding FH2 (IPR015425);Oryzabase=21780;TENOR=Os08t0431200-00;KEGG=Os08t0431200-00
Chr08	irgsp1_rep	five_prime_UTR	20855158	20855172	.	+	.	Parent=Os08t0431200-00
Chr08	irgsp1_rep	CDS	20855173	20855236	.	+	0	Parent=Os08t0431200-00
Chr08	irgsp1_rep	CDS	20855842	20856820	.	+	2	Parent=Os08t0431200-00
Chr08	irgsp1_rep	CDS	20856901	20857091	.	+	1	Parent=Os08t0431200-00
Chr08	irgsp1_rep	CDS	20857185	20857513	.	+	2	Parent=Os08t0431200-00
Chr08	irgsp1_rep	three_prime_UTR	20857514	20858415	.	+	.	Parent=Os08t0431200-00
Chr08	irgsp1_rep	mRNA	20858831	20862257	.	-	.	ID=Os08t0431300-01;Name=Os08t0431300-01;Locus_id=Os08g0431300;Note=Similar to Dihydrolipoamide S-acetyltransferase.;Transcript_evidence=AK070015 (DDBJ%2C Best hit);ORF_evidence=NP_001152158.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Biotin/lipoyl attachment (IPR000089),2-oxoacid dehydrogenase acyltransferase%2C catalytic domain (IPR001078),2-oxo acid dehydrogenase%2C lipoyl-binding site (IPR003016),E3 binding (IPR004167),Single hybrid motif (IPR011053),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J023040H11;Expression=AK070015;TENOR=Os08t0431300-01;KEGG=Os08t0431300-01 (EC:2.3.1.12)
Chr08	irgsp1_rep	five_prime_UTR	20862173	20862257	.	-	.	Parent=Os08t0431300-01
Chr08	irgsp1_rep	CDS	20861285	20862172	.	-	0	Parent=Os08t0431300-01
Chr08	irgsp1_rep	CDS	20860986	20861177	.	-	0	Parent=Os08t0431300-01
Chr08	irgsp1_rep	CDS	20860809	20860896	.	-	0	Parent=Os08t0431300-01
Chr08	irgsp1_rep	CDS	20860652	20860722	.	-	2	Parent=Os08t0431300-01
Chr08	irgsp1_rep	CDS	20860472	20860555	.	-	0	Parent=Os08t0431300-01
Chr08	irgsp1_rep	CDS	20859069	20859173	.	-	0	Parent=Os08t0431300-01
Chr08	irgsp1_rep	three_prime_UTR	20858831	20859068	.	-	.	Parent=Os08t0431300-01
Chr08	irgsp1_rep	mRNA	20873587	20874309	.	+	.	ID=Os08t0431500-01;Name=Os08t0431500-01;Locus_id=Os08g0431500;Note=NADH-ubiquinone oxidoreductase%2C 21kDa subunit%2C N-terminal domain containing protein.;Transcript_evidence=AK100797 (DDBJ%2C Best hit);ORF_evidence=Q6ZKB0 (UniProt);InterPro=NADH-ubiquinone oxidoreductase%2C 21kDa subunit%2C N-terminal (IPR019721);NIAS_FLcDNA=J023121F15;Expression=AK100797;TENOR=Os08t0431500-01;KEGG=Os08t0431500-01
Chr08	irgsp1_rep	five_prime_UTR	20873587	20873588	.	+	.	Parent=Os08t0431500-01
Chr08	irgsp1_rep	CDS	20873589	20873850	.	+	0	Parent=Os08t0431500-01
Chr08	irgsp1_rep	CDS	20873926	20874080	.	+	2	Parent=Os08t0431500-01
Chr08	irgsp1_rep	three_prime_UTR	20874081	20874309	.	+	.	Parent=Os08t0431500-01
Chr08	irgsp1_rep	mRNA	20873954	20874364	.	+	.	ID=Os08t0431500-02;Name=Os08t0431500-02;Locus_id=Os08g0431500;Note=Similar to predicted protein.;Transcript_evidence=AK058993 (DDBJ%2C Best hit);ORF_evidence=Q6ZKB0 (UniProt);InterPro=NADH-ubiquinone oxidoreductase%2C 21kDa subunit%2C N-terminal (IPR019721);NIAS_FLcDNA=001-020-F11;Expression=AK058993;TENOR=Os08t0431500-02;KEGG=Os08t0431500-02
Chr08	irgsp1_rep	five_prime_UTR	20873954	20873954	.	+	.	Parent=Os08t0431500-02
Chr08	irgsp1_rep	CDS	20873955	20874080	.	+	0	Parent=Os08t0431500-02
Chr08	irgsp1_rep	three_prime_UTR	20874081	20874364	.	+	.	Parent=Os08t0431500-02
Chr08	irgsp1_rep	mRNA	20883923	20886241	.	+	.	ID=Os08t0431700-01;Name=Os08t0431700-01;Locus_id=Os08g0431700;Note=Hypothetical protein.;Transcript_evidence=AK103332 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033125N22;Expression=AK103332;TENOR=Os08t0431700-01;KEGG=Os08t0431700-01
Chr08	irgsp1_rep	five_prime_UTR	20883923	20884055	.	+	.	Parent=Os08t0431700-01
Chr08	irgsp1_rep	five_prime_UTR	20884733	20885926	.	+	.	Parent=Os08t0431700-01
Chr08	irgsp1_rep	CDS	20885927	20886241	.	+	0	Parent=Os08t0431700-01
Chr08	irgsp1_rep	mRNA	20893000	20899442	.	+	.	ID=Os08t0431800-01;Name=Os08t0431800-01;Locus_id=Os08g0431800;Note=Conserved hypothetical protein.;Transcript_evidence=AK063114 (DDBJ%2C Best hit);ORF_evidence=B8BB06 (UniProt);NIAS_FLcDNA=001-111-D11;TENOR=Os08t0431800-01;KEGG=Os08t0431800-01
Chr08	irgsp1_rep	five_prime_UTR	20893000	20893050	.	+	.	Parent=Os08t0431800-01
Chr08	irgsp1_rep	CDS	20893051	20893143	.	+	0	Parent=Os08t0431800-01
Chr08	irgsp1_rep	CDS	20894925	20894980	.	+	0	Parent=Os08t0431800-01
Chr08	irgsp1_rep	CDS	20899229	20899334	.	+	1	Parent=Os08t0431800-01
Chr08	irgsp1_rep	three_prime_UTR	20899335	20899442	.	+	.	Parent=Os08t0431800-01
Chr08	irgsp1_rep	mRNA	20897215	20906881	.	-	.	ID=Os08t0431900-00;Name=Os08t0431900-00;Locus_id=Os08g0431900;CGSNL Gene Symbol=MADS23;CGSNL Gene Name=MADS BOX GENE 23;Oryzabase Gene Symbol Synonym(s)=OsMADS23%2C MADS-23;Oryzabase Gene Name Synonym(s)=MADS box gene23%2C MADS-box transcription factor 23;Note=Transcription factor MADS23.;Transcript_evidence=AY345220 (DDBJ%2C Best hit);ORF_evidence=Q6VAM4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box (IPR002100),Transcription factor%2C K-box (IPR002487);Oryzabase=3090;TENOR=Os08t0431900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	20906853	20906881	.	-	.	Parent=Os08t0431900-00
Chr08	irgsp1_rep	CDS	20906671	20906852	.	-	0	Parent=Os08t0431900-00
Chr08	irgsp1_rep	CDS	20904494	20904572	.	-	1	Parent=Os08t0431900-00
Chr08	irgsp1_rep	CDS	20899247	20899308	.	-	0	Parent=Os08t0431900-00
Chr08	irgsp1_rep	CDS	20897548	20897647	.	-	1	Parent=Os08t0431900-00
Chr08	irgsp1_rep	CDS	20897401	20897457	.	-	0	Parent=Os08t0431900-00
Chr08	irgsp1_rep	three_prime_UTR	20897215	20897400	.	-	.	Parent=Os08t0431900-00
Chr08	irgsp1_rep	mRNA	20901384	20905303	.	+	.	ID=Os08t0432000-01;Name=Os08t0432000-01;Locus_id=Os08g0432000;Note=Conserved hypothetical protein.;Transcript_evidence=AK070849 (DDBJ%2C Best hit);ORF_evidence=B9G119 (UniProt);NIAS_FLcDNA=J023064F12;Expression=AK070849;TENOR=Os08t0432000-01;KEGG=Os08t0432000-01
Chr08	irgsp1_rep	five_prime_UTR	20901384	20902500	.	+	.	Parent=Os08t0432000-01
Chr08	irgsp1_rep	CDS	20902501	20902609	.	+	0	Parent=Os08t0432000-01
Chr08	irgsp1_rep	CDS	20904902	20905080	.	+	2	Parent=Os08t0432000-01
Chr08	irgsp1_rep	three_prime_UTR	20905081	20905303	.	+	.	Parent=Os08t0432000-01
Chr08	irgsp1_rep	mRNA	20902074	20905381	.	+	.	ID=Os08t0432000-02;Name=Os08t0432000-02;Locus_id=Os08g0432000;Note=Conserved hypothetical protein.;Transcript_evidence=AK066449 (DDBJ%2C Best hit);ORF_evidence=B9G119 (UniProt);NIAS_FLcDNA=J013063B15;TENOR=Os08t0432000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	20902074	20904765	.	+	.	Parent=Os08t0432000-02
Chr08	irgsp1_rep	CDS	20904766	20905080	.	+	0	Parent=Os08t0432000-02
Chr08	irgsp1_rep	three_prime_UTR	20905081	20905381	.	+	.	Parent=Os08t0432000-02
Chr08	irgsp1_rep	mRNA	20931199	20932112	.	+	.	ID=Os08t0432300-01;Name=Os08t0432300-01;Locus_id=Os08g0432300;RAP-DB Gene Symbol Synonym(s)=TIG1%2C OsTCP15;RAP-DB Gene Name Synonym(s)=TILLER INCLINED GROWTH 1;CGSNL Gene Symbol=TIG1;CGSNL Gene Name=TILLER INCLINED GROWTH 1;Oryzabase Gene Symbol Synonym(s)=OsTCP22%2C OsTCP15%2C TCP22%2C TCP15%2C OsTIG1;Oryzabase Gene Name Synonym(s)=TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 22;Note=TCP transcriptional activator%2C Control of the tiller angle;Transcript_evidence=BT063457 (maize);ORF_evidence=Q6ZKS4;InterPro=Transcription factor TCP subgroup (IPR017887);Manual Curation=January 14%2C 2020;Literature_PMID=31002981;Oryzabase=12387;TENOR=Os08t0432300-00;KEGG=Os08t0432300-00;Subcellular location=nucleus (GO:0005634)
Chr08	irgsp1_rep	CDS	20931199	20932089	.	+	0	Parent=Os08t0432300-01
Chr08	irgsp1_rep	three_prime_UTR	20932090	20932112	.	+	.	Parent=Os08t0432300-01
Chr08	irgsp1_rep	mRNA	20945056	20947979	.	-	.	ID=Os08t0432500-01;Name=Os08t0432500-01;Locus_id=Os08g0432500;Note=Ribosomal protein L7/L12%2C C-terminal/adaptor protein ClpS-like domain containing protein.;Transcript_evidence=AK106170 (DDBJ%2C Best hit);ORF_evidence=NP_001150373.1 (RefSeq);GO=Biological Process: protein catabolic process (GO:0030163);InterPro=Adaptor protein ClpS%2C core (IPR003769),Ribosomal protein L7/L12%2C C-terminal/adaptor protein ClpS-like (IPR014719);NIAS_FLcDNA=001-208-B12;Expression=AK106170;TENOR=Os08t0432500-01;KEGG=Os08t0432500-01
Chr08	irgsp1_rep	five_prime_UTR	20947838	20947979	.	-	.	Parent=Os08t0432500-01
Chr08	irgsp1_rep	CDS	20947762	20947837	.	-	0	Parent=Os08t0432500-01
Chr08	irgsp1_rep	CDS	20947024	20947174	.	-	2	Parent=Os08t0432500-01
Chr08	irgsp1_rep	CDS	20945351	20945612	.	-	1	Parent=Os08t0432500-01
Chr08	irgsp1_rep	three_prime_UTR	20945056	20945350	.	-	.	Parent=Os08t0432500-01
Chr08	irgsp1_rep	mRNA	20974277	20977254	.	-	.	ID=Os08t0432800-01;Name=Os08t0432800-01;Locus_id=Os08g0432800;Oryzabase Gene Symbol Synonym(s)=OsbHLH038;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 038;Note=Similar to BHLH transcription activator Ivory seed.;Transcript_evidence=AK109616 (DDBJ%2C Best hit);ORF_evidence=NP_564944.1 (RefSeq);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=002-137-H01;Oryzabase=15329;Expression=AK109616;TENOR=Os08t0432800-01;KEGG=Os08t0432800-01
Chr08	irgsp1_rep	five_prime_UTR	20977040	20977254	.	-	.	Parent=Os08t0432800-01
Chr08	irgsp1_rep	CDS	20976584	20977039	.	-	0	Parent=Os08t0432800-01
Chr08	irgsp1_rep	CDS	20974493	20975074	.	-	0	Parent=Os08t0432800-01
Chr08	irgsp1_rep	three_prime_UTR	20974277	20974492	.	-	.	Parent=Os08t0432800-01
Chr08	irgsp1_rep	mRNA	20997277	20997537	.	+	.	ID=Os08t0433000-00;Name=Os08t0433000-00;Locus_id=Os08g0433000;CGSNL Gene Symbol=ADC3;CGSNL Gene Name=ARGININE DECARBOXYLASE 3;Oryzabase Gene Symbol Synonym(s)=OsADC3%2C OsADC1%2C ADC1;Oryzabase Gene Name Synonym(s)=Arginine decarboxylase 3;Note=Similar to Arginine decarboxylase.;Transcript_evidence=ab initio prediction;ORF_evidence=A3B825 (UniProt);GO=Biological Process: arginine catabolic process (GO:0006527),Biological Process: spermidine biosynthetic process (GO:0008295),Molecular Function: catalytic activity (GO:0003824),Molecular Function: arginine decarboxylase activity (GO:0008792);InterPro=Arginine decarboxylase (IPR002985),Orn/DAP/Arg decarboxylase 2%2C C-terminal (IPR022643);Oryzabase=21659;TENOR=Os08t0433000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	20997277	20997537	.	+	0	Parent=Os08t0433000-00
Chr08	irgsp1_rep	mRNA	20997575	20997816	.	+	.	ID=Os08t0433050-00;Name=Os08t0433050-00;Locus_id=Os08g0433050;Note=Similar to Arginine decarboxylase.;Transcript_evidence=EU944353 (DDBJ);ORF_evidence=A3B825 (UniProt);TENOR=Os08t0433050-00;KEGG=Os08t0433050-00 (EC:4.1.1.19)
Chr08	irgsp1_rep	CDS	20997575	20997796	.	+	0	Parent=Os08t0433050-00
Chr08	irgsp1_rep	three_prime_UTR	20997797	20997816	.	+	.	Parent=Os08t0433050-00
Chr08	irgsp1_rep	mRNA	21000076	21003946	.	-	.	ID=Os08t0433100-01;Name=Os08t0433100-01;Locus_id=Os08g0433100;Note=Uncharacterised protein family UPF0016 domain containing protein.;Transcript_evidence=AK066308 (DDBJ%2C Best hit);ORF_evidence=NP_001152126.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Uncharacterised protein family UPF0016 (IPR001727);NIAS_FLcDNA=J013061I19;Expression=AK066308;TENOR=Os08t0433100-01;KEGG=Os08t0433100-01
Chr08	irgsp1_rep	five_prime_UTR	21003845	21003946	.	-	.	Parent=Os08t0433100-01
Chr08	irgsp1_rep	CDS	21003824	21003844	.	-	0	Parent=Os08t0433100-01
Chr08	irgsp1_rep	CDS	21003644	21003712	.	-	0	Parent=Os08t0433100-01
Chr08	irgsp1_rep	CDS	21002733	21002792	.	-	0	Parent=Os08t0433100-01
Chr08	irgsp1_rep	CDS	21002598	21002645	.	-	0	Parent=Os08t0433100-01
Chr08	irgsp1_rep	CDS	21001966	21002054	.	-	0	Parent=Os08t0433100-01
Chr08	irgsp1_rep	CDS	21001833	21001869	.	-	1	Parent=Os08t0433100-01
Chr08	irgsp1_rep	CDS	21001704	21001751	.	-	0	Parent=Os08t0433100-01
Chr08	irgsp1_rep	CDS	21001089	21001157	.	-	0	Parent=Os08t0433100-01
Chr08	irgsp1_rep	CDS	21000927	21000971	.	-	0	Parent=Os08t0433100-01
Chr08	irgsp1_rep	CDS	21000728	21000853	.	-	0	Parent=Os08t0433100-01
Chr08	irgsp1_rep	three_prime_UTR	21000637	21000727	.	-	.	Parent=Os08t0433100-01
Chr08	irgsp1_rep	three_prime_UTR	21000076	21000548	.	-	.	Parent=Os08t0433100-01
Chr08	irgsp1_rep	mRNA	21010736	21013557	.	+	.	ID=Os08t0433200-01;Name=Os08t0433200-01;Locus_id=Os08g0433200;Note=Conserved hypothetical protein.;Transcript_evidence=AK099471 (DDBJ%2C Best hit);ORF_evidence=B8BB11 (UniProt);NIAS_FLcDNA=J013024A05;Expression=AK099471;TENOR=Os08t0433200-01;KEGG=Os08t0433200-01
Chr08	irgsp1_rep	five_prime_UTR	21010736	21010886	.	+	.	Parent=Os08t0433200-01
Chr08	irgsp1_rep	five_prime_UTR	21011561	21011613	.	+	.	Parent=Os08t0433200-01
Chr08	irgsp1_rep	CDS	21011614	21011786	.	+	0	Parent=Os08t0433200-01
Chr08	irgsp1_rep	CDS	21011897	21011952	.	+	1	Parent=Os08t0433200-01
Chr08	irgsp1_rep	CDS	21012041	21012117	.	+	2	Parent=Os08t0433200-01
Chr08	irgsp1_rep	CDS	21012213	21012353	.	+	0	Parent=Os08t0433200-01
Chr08	irgsp1_rep	CDS	21012715	21012826	.	+	0	Parent=Os08t0433200-01
Chr08	irgsp1_rep	CDS	21013045	21013238	.	+	2	Parent=Os08t0433200-01
Chr08	irgsp1_rep	three_prime_UTR	21013239	21013557	.	+	.	Parent=Os08t0433200-01
Chr08	irgsp1_rep	mRNA	21014458	21015691	.	+	.	ID=Os08t0433300-00;Name=Os08t0433300-00;Locus_id=Os08g0433300;Note=Sialidase domain containing protein.;Transcript_evidence=EU965133 (DDBJ);ORF_evidence=NP_001061873.1 (RefSeq);InterPro=Neuraminidase (IPR011040),Glycosyl hydrolase family 43%2C five-bladed beta-propellor domain (IPR023296);TENOR=Os08t0433300-00;KEGG=Os08t0433300-00
Chr08	irgsp1_rep	CDS	21014458	21015603	.	+	0	Parent=Os08t0433300-00
Chr08	irgsp1_rep	three_prime_UTR	21015604	21015691	.	+	.	Parent=Os08t0433300-00
Chr08	irgsp1_rep	mRNA	21015721	21015974	.	+	.	ID=Os08t0433350-00;Name=Os08t0433350-00;Locus_id=Os08g0433350;Note=Similar to photosystem II protein I.;Transcript_evidence=EU955725 (DDBJ);ORF_evidence=YP_002720022.1 (RefSeq);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: photosystem II reaction center (GO:0009539),Cellular Component: membrane (GO:0016020);InterPro=Photosystem II PsbI (IPR003686);TENOR=Os08t0433350-00;KEGG=Os08t0433350-00
Chr08	irgsp1_rep	five_prime_UTR	21015721	21015824	.	+	.	Parent=Os08t0433350-00
Chr08	irgsp1_rep	CDS	21015825	21015974	.	+	0	Parent=Os08t0433350-00
Chr08	irgsp1_rep	mRNA	21019546	21021361	.	-	.	ID=Os08t0433400-01;Name=Os08t0433400-01;Locus_id=Os08g0433400;Note=Hypothetical conserved gene.;Transcript_evidence=AK059468 (DDBJ%2C Best hit);ORF_evidence=A2YVI0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=001-028-D10;Expression=AK059468;TENOR=Os08t0433400-01;KEGG=Os08t0433400-01
Chr08	irgsp1_rep	five_prime_UTR	21021289	21021361	.	-	.	Parent=Os08t0433400-01
Chr08	irgsp1_rep	CDS	21021156	21021288	.	-	0	Parent=Os08t0433400-01
Chr08	irgsp1_rep	CDS	21020929	21021062	.	-	2	Parent=Os08t0433400-01
Chr08	irgsp1_rep	three_prime_UTR	21019546	21020928	.	-	.	Parent=Os08t0433400-01
Chr08	irgsp1_rep	mRNA	21019370	21021463	.	-	.	ID=Os08t0433400-02;Name=Os08t0433400-02;Locus_id=Os08g0433400;RAP-DB Gene Symbol Synonym(s)=OsMYB106;Note=MYB transcription factor%2C Response to salt stress;Transcript_evidence=Inferred from literature;ORF_evidence=Q6ZA94;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeobox-like domain superfamily (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930);Manual Curation=September 30%2C 2020;Literature_PMID=32938753;Subcellular location=nucleus (GO:0005634)
Chr08	irgsp1_rep	five_prime_UTR	21021289	21021463	.	-	.	Parent=Os08t0433400-02
Chr08	irgsp1_rep	CDS	21021156	21021288	.	-	0	Parent=Os08t0433400-02
Chr08	irgsp1_rep	CDS	21020933	21021062	.	-	2	Parent=Os08t0433400-02
Chr08	irgsp1_rep	CDS	21019762	21020572	.	-	1	Parent=Os08t0433400-02
Chr08	irgsp1_rep	three_prime_UTR	21019370	21019761	.	-	.	Parent=Os08t0433400-02
Chr08	irgsp1_rep	mRNA	21025942	21027916	.	-	.	ID=Os08t0433500-01;Name=Os08t0433500-01;Locus_id=Os08g0433500;RAP-DB Gene Symbol Synonym(s)=NAC106%2C ONAC106;RAP-DB Gene Name Synonym(s)=NAC DOMAIN-CONTAINING PROTEIN 106%2C NAC domain-containing protein 106;CGSNL Gene Symbol=NAC106;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 106;Oryzabase Gene Symbol Synonym(s)=ONAC106;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 106;Note=Senescence-associated NAC transcription factor%2C Negative regulation of leaf senescence%2C Salt stress tolerance%2C Plant architecture;Transcript_evidence=NM_001188667;ORF_evidence=A3BTF2;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=NAC domain (IPR003441);Manual Curation=December 21%2C 2015;Literature_PMID=26443376;Oryzabase=15868;TENOR=Os08t0433500-00
Chr08	irgsp1_rep	CDS	21027757	21027916	.	-	0	Parent=Os08t0433500-01
Chr08	irgsp1_rep	CDS	21027278	21027606	.	-	2	Parent=Os08t0433500-01
Chr08	irgsp1_rep	CDS	21025942	21026457	.	-	0	Parent=Os08t0433500-01
Chr08	irgsp1_rep	mRNA	21034200	21036062	.	-	.	ID=Os08t0433600-01;Name=Os08t0433600-01;Locus_id=Os08g0433600;Note=Protein of unknown function DUF962 family protein.;Transcript_evidence=AK067255 (DDBJ%2C Best hit);ORF_evidence=NP_001151002.1 (RefSeq);InterPro=Protein of unknown function DUF962 (IPR009305);NIAS_FLcDNA=J013098I15;Expression=AK067255;TENOR=Os08t0433600-01;KEGG=Os08t0433600-01
Chr08	irgsp1_rep	five_prime_UTR	21035995	21036062	.	-	.	Parent=Os08t0433600-01
Chr08	irgsp1_rep	CDS	21035581	21035994	.	-	0	Parent=Os08t0433600-01
Chr08	irgsp1_rep	CDS	21035387	21035455	.	-	0	Parent=Os08t0433600-01
Chr08	irgsp1_rep	CDS	21034655	21034774	.	-	0	Parent=Os08t0433600-01
Chr08	irgsp1_rep	three_prime_UTR	21034200	21034654	.	-	.	Parent=Os08t0433600-01
Chr08	irgsp1_rep	mRNA	21043003	21047252	.	+	.	ID=Os08t0434000-01;Name=Os08t0434000-01;Locus_id=Os08g0434000;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK119426 (DDBJ%2C Best hit);ORF_evidence=B6SXJ8 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-132-H08;Expression=AK119426;TENOR=Os08t0434000-01;KEGG=Os08t0434000-01
Chr08	irgsp1_rep	CDS	21043003	21044808	.	+	0	Parent=Os08t0434000-01
Chr08	irgsp1_rep	three_prime_UTR	21044809	21045534	.	+	.	Parent=Os08t0434000-01
Chr08	irgsp1_rep	three_prime_UTR	21046287	21046582	.	+	.	Parent=Os08t0434000-01
Chr08	irgsp1_rep	three_prime_UTR	21046687	21047252	.	+	.	Parent=Os08t0434000-01
Chr08	irgsp1_rep	mRNA	21050708	21052845	.	+	.	ID=Os08t0434100-01;Name=Os08t0434100-01;Locus_id=Os08g0434100;CGSNL Gene Symbol=RNS3;CGSNL Gene Name=RIBONUCLEASE 3;Oryzabase Gene Symbol Synonym(s)=OsRNS3%2C OsRNasePD2%2C RNasePD2;Oryzabase Gene Name Synonym(s)=RNase 3%2C extracellular ribonuclease LE;Note=Similar to S-like ribonuclease (RNase PD2) (Fragment).;Transcript_evidence=AK058502 (DDBJ%2C Best hit),AK059802 (DDBJ%2C Best hit);ORF_evidence=Q7GC42 (UniProt);GO=Molecular Function: RNA binding (GO:0003723),Molecular Function: ribonuclease T2 activity (GO:0033897);InterPro=Ribonuclease T2 (IPR001568),Ribonuclease T2%2C active site (IPR018188);NIAS_FLcDNA=001-016-F07,006-204-G01;Oryzabase=13015;TENOR=Os08t0434100-01
Chr08	irgsp1_rep	five_prime_UTR	21050708	21050793	.	+	.	Parent=Os08t0434100-01
Chr08	irgsp1_rep	CDS	21050794	21051054	.	+	0	Parent=Os08t0434100-01
Chr08	irgsp1_rep	CDS	21052016	21052444	.	+	0	Parent=Os08t0434100-01
Chr08	irgsp1_rep	three_prime_UTR	21052445	21052845	.	+	.	Parent=Os08t0434100-01
Chr08	irgsp1_rep	mRNA	21050791	21052448	.	-	.	ID=Os08t0434150-00;Name=Os08t0434150-00;Locus_id=Os08g0434150;Note=Hypothetical gene.;Transcript_evidence=BT019161 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0434150-00
Chr08	irgsp1_rep	five_prime_UTR	21052448	21052448	.	-	.	Parent=Os08t0434150-00
Chr08	irgsp1_rep	CDS	21052005	21052447	.	-	0	Parent=Os08t0434150-00
Chr08	irgsp1_rep	CDS	21050791	21051047	.	-	1	Parent=Os08t0434150-00
Chr08	irgsp1_rep	mRNA	21053477	21053930	.	-	.	ID=Os08t0434201-00;Name=Os08t0434201-00;Locus_id=Os08g0434201;Note=Conserved hypothetical protein.;Transcript_evidence=EU947737 (DDBJ);ORF_evidence=B9G130 (UniProt);TENOR=Os08t0434201-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	21053831	21053930	.	-	.	Parent=Os08t0434201-00
Chr08	irgsp1_rep	CDS	21053477	21053830	.	-	0	Parent=Os08t0434201-00
Chr08	irgsp1_rep	mRNA	21054660	21056008	.	-	.	ID=Os08t0434300-01;Name=Os08t0434300-01;Locus_id=Os08g0434300;Oryzabase Gene Symbol Synonym(s)=MDH;Oryzabase Gene Name Synonym(s)=malate dehydrogenase;Note=Similar to Malate dehydrogenase precursor (EC 1.1.1.37).;Transcript_evidence=AK058477 (DDBJ%2C Best hit);ORF_evidence=A2YVI5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: malate metabolic process (GO:0006108),Biological Process: cellular carbohydrate metabolic process (GO:0044262),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: malate dehydrogenase activity (GO:0016615),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: L-malate dehydrogenase activity (GO:0030060);InterPro=Lactate/malate dehydrogenase%2C N-terminal (IPR001236),Malate dehydrogenase%2C active site (IPR001252),L-lactate/malate dehydrogenase (IPR001557),Malate dehydrogenase%2C type 1 (IPR010097),Lactate dehydrogenase/glycoside hydrolase%2C family 4%2C C-terminal (IPR015955),NAD(P)-binding domain (IPR016040),Lactate/malate dehydrogenase%2C C-terminal (IPR022383);NIAS_FLcDNA=001-016-C06;Oryzabase=16765;Expression=AK058477;TENOR=Os08t0434300-01;KEGG=Os08t0434300-01 (EC:1.1.1.37)
Chr08	irgsp1_rep	five_prime_UTR	21056008	21056008	.	-	.	Parent=Os08t0434300-01
Chr08	irgsp1_rep	CDS	21054937	21056007	.	-	0	Parent=Os08t0434300-01
Chr08	irgsp1_rep	three_prime_UTR	21054660	21054936	.	-	.	Parent=Os08t0434300-01
Chr08	irgsp1_rep	mRNA	21078139	21079066	.	+	.	ID=Os08t0434500-00;Name=Os08t0434500-00;Locus_id=Os08g0434500;CGSNL Gene Symbol=CSLA11;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE A11;Oryzabase Gene Symbol Synonym(s)=OsCslA11%2C OsCSLA11;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;Oryzabase=18106;TENOR=Os08t0434500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	21078139	21078318	.	+	0	Parent=Os08t0434500-00
Chr08	irgsp1_rep	CDS	21078647	21078745	.	+	0	Parent=Os08t0434500-00
Chr08	irgsp1_rep	CDS	21078950	21079066	.	+	0	Parent=Os08t0434500-00
Chr08	irgsp1_rep	mRNA	21080207	21085066	.	-	.	ID=Os08t0434566-01;Name=Os08t0434566-01;Locus_id=Os08g0434566;Note=Hypothetical gene.;Transcript_evidence=AK288606 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090052P16;TENOR=Os08t0434566-01;KEGG=Os08t0434566-01
Chr08	irgsp1_rep	five_prime_UTR	21084053	21085066	.	-	.	Parent=Os08t0434566-01
Chr08	irgsp1_rep	CDS	21083681	21084052	.	-	0	Parent=Os08t0434566-01
Chr08	irgsp1_rep	three_prime_UTR	21080207	21083680	.	-	.	Parent=Os08t0434566-01
Chr08	irgsp1_rep	mRNA	21083276	21086649	.	+	.	ID=Os08t0434632-01;Name=Os08t0434632-01;Locus_id=Os08g0434632;CGSNL Gene Symbol=CSLA11;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE A11;Oryzabase Gene Symbol Synonym(s)=OsCslA11%2C OsCSLA11;Note=Conserved hypothetical protein.;Transcript_evidence=AK242604 (DDBJ%2C Best hit);ORF_evidence=B9G131 (UniProt);NIAS_FLcDNA=J090014M07;Oryzabase=18106;TENOR=Os08t0434632-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	21083276	21083374	.	+	.	Parent=Os08t0434632-01
Chr08	irgsp1_rep	five_prime_UTR	21083777	21083923	.	+	.	Parent=Os08t0434632-01
Chr08	irgsp1_rep	CDS	21083924	21084029	.	+	0	Parent=Os08t0434632-01
Chr08	irgsp1_rep	CDS	21084186	21084310	.	+	2	Parent=Os08t0434632-01
Chr08	irgsp1_rep	three_prime_UTR	21084311	21084921	.	+	.	Parent=Os08t0434632-01
Chr08	irgsp1_rep	three_prime_UTR	21085019	21085422	.	+	.	Parent=Os08t0434632-01
Chr08	irgsp1_rep	three_prime_UTR	21085509	21086649	.	+	.	Parent=Os08t0434632-01
Chr08	irgsp1_rep	mRNA	21089942	21092044	.	-	.	ID=Os08t0434700-01;Name=Os08t0434700-01;Locus_id=Os08g0434700;CGSNL Gene Symbol=DLN210;CGSNL Gene Name=DLN REPRESSOR 210;Oryzabase Gene Symbol Synonym(s)=OsDLN210;Oryzabase Gene Name Synonym(s)=DLN repressor 210%2C DLN motif protein 210;Note=Homeodomain-like containing protein.;Transcript_evidence=AK070338 (DDBJ%2C Best hit);ORF_evidence=B8BB14 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778);NIAS_FLcDNA=J023049D17;Oryzabase=23228;Expression=AK070338;TENOR=Os08t0434700-01;KEGG=Os08t0434700-01
Chr08	irgsp1_rep	five_prime_UTR	21091923	21092044	.	-	.	Parent=Os08t0434700-01
Chr08	irgsp1_rep	CDS	21091592	21091922	.	-	0	Parent=Os08t0434700-01
Chr08	irgsp1_rep	CDS	21091413	21091489	.	-	2	Parent=Os08t0434700-01
Chr08	irgsp1_rep	CDS	21091041	21091289	.	-	0	Parent=Os08t0434700-01
Chr08	irgsp1_rep	CDS	21090493	21090924	.	-	0	Parent=Os08t0434700-01
Chr08	irgsp1_rep	three_prime_UTR	21089942	21090492	.	-	.	Parent=Os08t0434700-01
Chr08	irgsp1_rep	mRNA	21155524	21156395	.	+	.	ID=Os08t0435700-00;Name=Os08t0435700-00;Locus_id=Os08g0435700;Note=Similar to MYB domain class transcription factor.;Transcript_evidence=ab initio prediction;ORF_evidence=D9ZJ60 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);TENOR=Os08t0435700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	21155524	21155875	.	+	0	Parent=Os08t0435700-00
Chr08	irgsp1_rep	CDS	21155971	21156395	.	+	2	Parent=Os08t0435700-00
Chr08	irgsp1_rep	mRNA	21157473	21157775	.	+	.	ID=Os08t0435725-00;Name=Os08t0435725-00;Locus_id=Os08g0435725;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2YVI9 (UniProt);TENOR=Os08t0435725-00
Chr08	irgsp1_rep	CDS	21157473	21157775	.	+	0	Parent=Os08t0435725-00
Chr08	irgsp1_rep	mRNA	21157833	21158034	.	+	.	ID=Os08t0435750-00;Name=Os08t0435750-00;Locus_id=Os08g0435750;Note=Non-protein coding transcript.;Transcript_evidence=CT836039 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os08t0435750-00
Chr08	irgsp1_rep	exon	21157833	21158034	.	+	.	Parent=Os08t0435750-00
Chr08	irgsp1_rep	mRNA	21165131	21169759	.	-	.	ID=Os08t0435800-01;Name=Os08t0435800-01;Locus_id=Os08g0435800;Oryzabase Gene Symbol Synonym(s)=OsLPLA;Oryzabase Gene Name Synonym(s)=lipoyl-protein ligase A;Note=Similar to Lipoate protein ligase-like protein.;Transcript_evidence=AK121712 (DDBJ%2C Best hit);ORF_evidence=NP_189543.2 (RefSeq);GO=Biological Process: protein modification process (GO:0006464),Molecular Function: catalytic activity (GO:0003824);InterPro=Biotin/lipoate A/B protein ligase (IPR004143);NIAS_FLcDNA=J033078H12;Oryzabase=13967;Expression=AK121712;TENOR=Os08t0435800-01;KEGG=Os08t0435800-01
Chr08	irgsp1_rep	five_prime_UTR	21169471	21169759	.	-	.	Parent=Os08t0435800-01
Chr08	irgsp1_rep	CDS	21169286	21169470	.	-	0	Parent=Os08t0435800-01
Chr08	irgsp1_rep	CDS	21168935	21169173	.	-	1	Parent=Os08t0435800-01
Chr08	irgsp1_rep	CDS	21168422	21168570	.	-	2	Parent=Os08t0435800-01
Chr08	irgsp1_rep	CDS	21166089	21166328	.	-	0	Parent=Os08t0435800-01
Chr08	irgsp1_rep	three_prime_UTR	21165614	21166088	.	-	.	Parent=Os08t0435800-01
Chr08	irgsp1_rep	three_prime_UTR	21165131	21165499	.	-	.	Parent=Os08t0435800-01
Chr08	irgsp1_rep	mRNA	21171332	21172654	.	-	.	ID=Os08t0435900-01;Name=Os08t0435900-01;Locus_id=Os08g0435900;CGSNL Gene Symbol=DYE1;CGSNL Gene Name=DELAYED YELLOWING1;Oryzabase Gene Symbol Synonym(s)=cab%2C cab-n8%2C Lhca4%2C OsLhca4;Oryzabase Gene Name Synonym(s)=chlorophyll a/b binding protein%2C light-harvesting chlorophyll a/b binding protein%2C cab gene from Norin 8%2C delayed yellowing 1%2C light-harvesting complex subunit a4;Note=Similar to LHC I type IV chlorophyll binding protein (Fragment).;Transcript_evidence=AK104499 (DDBJ%2C Best hit),AK067712 (DDBJ%2C Best hit),AK067809 (DDBJ%2C Best hit),AK103921 (DDBJ%2C Best hit),AK104416 (DDBJ%2C Best hit);ORF_evidence=Q6SYB3 (UniProt);GO=Biological Process: photosynthesis%2C light harvesting (GO:0009765),Cellular Component: membrane (GO:0016020);InterPro=Chlorophyll A-B binding protein%2C plant (IPR001344),Chlorophyll A-B binding protein (IPR022796),Chlorophyll a/b binding protein domain (IPR023329);NIAS_FLcDNA=006-302-E04,J013120A20,J013121A03,001-013-B07,006-204-G03;Oryzabase=15765;TENOR=Os08t0435900-01
Chr08	irgsp1_rep	five_prime_UTR	21172586	21172654	.	-	.	Parent=Os08t0435900-01
Chr08	irgsp1_rep	CDS	21172401	21172585	.	-	0	Parent=Os08t0435900-01
Chr08	irgsp1_rep	CDS	21171893	21172308	.	-	1	Parent=Os08t0435900-01
Chr08	irgsp1_rep	CDS	21171666	21171799	.	-	2	Parent=Os08t0435900-01
Chr08	irgsp1_rep	three_prime_UTR	21171332	21171665	.	-	.	Parent=Os08t0435900-01
Chr08	irgsp1_rep	mRNA	21171332	21172643	.	-	.	ID=Os08t0435900-03;Name=Os08t0435900-03;Locus_id=Os08g0435900;CGSNL Gene Symbol=DYE1;CGSNL Gene Name=DELAYED YELLOWING1;Oryzabase Gene Symbol Synonym(s)=cab%2C cab-n8%2C Lhca4%2C OsLhca4;Oryzabase Gene Name Synonym(s)=chlorophyll a/b binding protein%2C light-harvesting chlorophyll a/b binding protein%2C cab gene from Norin 8%2C delayed yellowing 1%2C light-harvesting complex subunit a4;Note=Similar to LHC I type IV chlorophyll binding protein (Fragment).;Transcript_evidence=AK060222 (DDBJ%2C Best hit);ORF_evidence=Q6SYB3 (UniProt);GO=Biological Process: photosynthesis%2C light harvesting (GO:0009765),Cellular Component: membrane (GO:0016020);InterPro=Chlorophyll A-B binding protein%2C plant (IPR001344),Chlorophyll A-B binding protein (IPR022796),Chlorophyll a/b binding protein domain (IPR023329);NIAS_FLcDNA=001-002-F08;Oryzabase=15765;Expression=AK060222;TENOR=Os08t0435900-03;KEGG=Os08t0435900-03
Chr08	irgsp1_rep	five_prime_UTR	21172586	21172643	.	-	.	Parent=Os08t0435900-03
Chr08	irgsp1_rep	CDS	21172401	21172585	.	-	0	Parent=Os08t0435900-03
Chr08	irgsp1_rep	CDS	21171893	21172308	.	-	1	Parent=Os08t0435900-03
Chr08	irgsp1_rep	CDS	21171666	21171799	.	-	2	Parent=Os08t0435900-03
Chr08	irgsp1_rep	three_prime_UTR	21171487	21171665	.	-	.	Parent=Os08t0435900-03
Chr08	irgsp1_rep	three_prime_UTR	21171332	21171422	.	-	.	Parent=Os08t0435900-03
Chr08	irgsp1_rep	mRNA	21171278	21171568	.	-	.	ID=Os08t0435900-04;Name=Os08t0435900-04;Locus_id=Os08g0435900;CGSNL Gene Symbol=DYE1;CGSNL Gene Name=DELAYED YELLOWING1;Oryzabase Gene Symbol Synonym(s)=cab%2C cab-n8%2C Lhca4%2C OsLhca4;Oryzabase Gene Name Synonym(s)=chlorophyll a/b binding protein%2C light-harvesting chlorophyll a/b binding protein%2C cab gene from Norin 8%2C delayed yellowing 1%2C light-harvesting complex subunit a4;Note=Non-protein coding transcript.;Transcript_evidence=AK060265 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-005-C07;Oryzabase=15765;TENOR=Os08t0435900-04
Chr08	irgsp1_rep	exon	21171278	21171568	.	-	.	Parent=Os08t0435900-04
Chr08	irgsp1_rep	mRNA	21173495	21179162	.	-	.	ID=Os08t0436000-01;Name=Os08t0436000-01;Locus_id=Os08g0436000;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK067548 (DDBJ%2C Best hit);ORF_evidence=Q2XTB3 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013107I22;Expression=AK067548;TENOR=Os08t0436000-01;KEGG=Os08t0436000-01
Chr08	irgsp1_rep	five_prime_UTR	21178973	21179162	.	-	.	Parent=Os08t0436000-01
Chr08	irgsp1_rep	CDS	21178790	21178972	.	-	0	Parent=Os08t0436000-01
Chr08	irgsp1_rep	CDS	21176882	21177091	.	-	0	Parent=Os08t0436000-01
Chr08	irgsp1_rep	CDS	21176195	21176257	.	-	0	Parent=Os08t0436000-01
Chr08	irgsp1_rep	CDS	21176049	21176122	.	-	0	Parent=Os08t0436000-01
Chr08	irgsp1_rep	CDS	21175873	21175968	.	-	1	Parent=Os08t0436000-01
Chr08	irgsp1_rep	CDS	21175712	21175769	.	-	1	Parent=Os08t0436000-01
Chr08	irgsp1_rep	CDS	21175539	21175643	.	-	0	Parent=Os08t0436000-01
Chr08	irgsp1_rep	CDS	21175368	21175449	.	-	0	Parent=Os08t0436000-01
Chr08	irgsp1_rep	CDS	21174380	21174492	.	-	2	Parent=Os08t0436000-01
Chr08	irgsp1_rep	CDS	21173732	21174133	.	-	0	Parent=Os08t0436000-01
Chr08	irgsp1_rep	three_prime_UTR	21173495	21173731	.	-	.	Parent=Os08t0436000-01
Chr08	irgsp1_rep	mRNA	21173501	21176249	.	-	.	ID=Os08t0436000-02;Name=Os08t0436000-02;Locus_id=Os08g0436000;Note=Hypothetical conserved gene.;Transcript_evidence=AK061305 (DDBJ%2C Best hit),AK104066 (DDBJ%2C Best hit);ORF_evidence=B8BB16 (UniProt);NIAS_FLcDNA=006-301-H05,001-026-C05;TENOR=Os08t0436000-02;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	21176249	21176249	.	-	.	Parent=Os08t0436000-02
Chr08	irgsp1_rep	CDS	21176195	21176248	.	-	0	Parent=Os08t0436000-02
Chr08	irgsp1_rep	CDS	21176049	21176122	.	-	0	Parent=Os08t0436000-02
Chr08	irgsp1_rep	CDS	21175873	21175968	.	-	1	Parent=Os08t0436000-02
Chr08	irgsp1_rep	CDS	21175712	21175769	.	-	1	Parent=Os08t0436000-02
Chr08	irgsp1_rep	CDS	21175539	21175643	.	-	0	Parent=Os08t0436000-02
Chr08	irgsp1_rep	CDS	21175368	21175449	.	-	0	Parent=Os08t0436000-02
Chr08	irgsp1_rep	CDS	21174380	21174492	.	-	2	Parent=Os08t0436000-02
Chr08	irgsp1_rep	CDS	21173732	21174133	.	-	0	Parent=Os08t0436000-02
Chr08	irgsp1_rep	three_prime_UTR	21173501	21173731	.	-	.	Parent=Os08t0436000-02
Chr08	irgsp1_rep	mRNA	21190225	21194296	.	+	.	ID=Os08t0436100-01;Name=Os08t0436100-01;Locus_id=Os08g0436100;Note=Nucleoside phosphatase GDA1/CD39 family protein.;Transcript_evidence=AK065062 (DDBJ%2C Best hit);ORF_evidence=B6SWT6 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Nucleoside phosphatase GDA1/CD39 (IPR000407);NIAS_FLcDNA=J013001J16;Expression=AK065062;TENOR=Os08t0436100-01;KEGG=Os08t0436100-01
Chr08	irgsp1_rep	five_prime_UTR	21190225	21190361	.	+	.	Parent=Os08t0436100-01
Chr08	irgsp1_rep	CDS	21190362	21190950	.	+	0	Parent=Os08t0436100-01
Chr08	irgsp1_rep	CDS	21191191	21191306	.	+	2	Parent=Os08t0436100-01
Chr08	irgsp1_rep	CDS	21191399	21191506	.	+	0	Parent=Os08t0436100-01
Chr08	irgsp1_rep	CDS	21191644	21191698	.	+	0	Parent=Os08t0436100-01
Chr08	irgsp1_rep	CDS	21191923	21192117	.	+	2	Parent=Os08t0436100-01
Chr08	irgsp1_rep	CDS	21192532	21192629	.	+	2	Parent=Os08t0436100-01
Chr08	irgsp1_rep	CDS	21193374	21193570	.	+	0	Parent=Os08t0436100-01
Chr08	irgsp1_rep	CDS	21193649	21193735	.	+	1	Parent=Os08t0436100-01
Chr08	irgsp1_rep	CDS	21193828	21193996	.	+	1	Parent=Os08t0436100-01
Chr08	irgsp1_rep	three_prime_UTR	21193997	21194296	.	+	.	Parent=Os08t0436100-01
Chr08	irgsp1_rep	mRNA	21194863	21200130	.	+	.	ID=Os08t0436200-01;Name=Os08t0436200-01;Locus_id=Os08g0436200;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK071857 (DDBJ%2C Best hit);ORF_evidence=B6TQI1 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-CH-type (IPR011016),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Protein of unknown function DUF3675 (IPR022143);NIAS_FLcDNA=J023118I21;Expression=AK071857;TENOR=Os08t0436200-01;KEGG=Os08t0436200-01
Chr08	irgsp1_rep	five_prime_UTR	21194863	21194915	.	+	.	Parent=Os08t0436200-01
Chr08	irgsp1_rep	five_prime_UTR	21196907	21197057	.	+	.	Parent=Os08t0436200-01
Chr08	irgsp1_rep	five_prime_UTR	21197138	21197242	.	+	.	Parent=Os08t0436200-01
Chr08	irgsp1_rep	CDS	21197243	21197494	.	+	0	Parent=Os08t0436200-01
Chr08	irgsp1_rep	CDS	21197693	21197764	.	+	0	Parent=Os08t0436200-01
Chr08	irgsp1_rep	CDS	21198739	21198801	.	+	0	Parent=Os08t0436200-01
Chr08	irgsp1_rep	CDS	21198939	21199091	.	+	0	Parent=Os08t0436200-01
Chr08	irgsp1_rep	CDS	21199179	21199255	.	+	0	Parent=Os08t0436200-01
Chr08	irgsp1_rep	CDS	21199350	21199440	.	+	1	Parent=Os08t0436200-01
Chr08	irgsp1_rep	CDS	21199691	21199813	.	+	0	Parent=Os08t0436200-01
Chr08	irgsp1_rep	three_prime_UTR	21199814	21200130	.	+	.	Parent=Os08t0436200-01
Chr08	irgsp1_rep	mRNA	21205488	21206165	.	+	.	ID=Os08t0436400-00;Name=Os08t0436400-00;Locus_id=Os08g0436400;CGSNL Gene Symbol=SAP12;CGSNL Gene Name=STRESS ASSOCIATED PROTEIN GENE 12;Oryzabase Gene Symbol Synonym(s)=OsSAP12;Oryzabase Gene Name Synonym(s)=stress-associated protein 12;Note=Zinc finger A20 and AN1 domain-containing stress-associated protein 12.;Transcript_evidence=AK372340 (DDBJ);ORF_evidence=Q6Z541 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C AN1-type (IPR000058),Zinc finger%2C A20-type (IPR002653);Oryzabase=18187;TENOR=Os08t0436400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	21205488	21206162	.	+	0	Parent=Os08t0436400-00
Chr08	irgsp1_rep	three_prime_UTR	21206163	21206165	.	+	.	Parent=Os08t0436400-00
Chr08	irgsp1_rep	mRNA	21207800	21208570	.	-	.	ID=Os08t0436500-00;Name=Os08t0436500-00;Locus_id=Os08g0436500;Note=Hypothetical conserved gene.;Transcript_evidence=CT836024 (DDBJ%2C Best hit);ORF_evidence=Q6Z540 (UniProt);TENOR=Os08t0436500-00;KEGG=Os08t0436500-00
Chr08	irgsp1_rep	five_prime_UTR	21208384	21208570	.	-	.	Parent=Os08t0436500-00
Chr08	irgsp1_rep	CDS	21208003	21208383	.	-	0	Parent=Os08t0436500-00
Chr08	irgsp1_rep	three_prime_UTR	21207800	21208002	.	-	.	Parent=Os08t0436500-00
Chr08	irgsp1_rep	mRNA	21208686	21211744	.	+	.	ID=Os08t0436600-01;Name=Os08t0436600-01;Locus_id=Os08g0436600;Note=Hypothetical conserved gene.;Transcript_evidence=AK240773 (DDBJ%2C Best hit);ORF_evidence=B9G139 (UniProt);NIAS_FLcDNA=J053065G01;TENOR=Os08t0436600-01;KEGG=Os08t0436600-01
Chr08	irgsp1_rep	five_prime_UTR	21208686	21208773	.	+	.	Parent=Os08t0436600-01
Chr08	irgsp1_rep	CDS	21208774	21209049	.	+	0	Parent=Os08t0436600-01
Chr08	irgsp1_rep	CDS	21209164	21209258	.	+	0	Parent=Os08t0436600-01
Chr08	irgsp1_rep	CDS	21209548	21209566	.	+	1	Parent=Os08t0436600-01
Chr08	irgsp1_rep	three_prime_UTR	21209567	21209627	.	+	.	Parent=Os08t0436600-01
Chr08	irgsp1_rep	three_prime_UTR	21209747	21209829	.	+	.	Parent=Os08t0436600-01
Chr08	irgsp1_rep	three_prime_UTR	21210052	21210376	.	+	.	Parent=Os08t0436600-01
Chr08	irgsp1_rep	three_prime_UTR	21210489	21210581	.	+	.	Parent=Os08t0436600-01
Chr08	irgsp1_rep	three_prime_UTR	21210710	21210801	.	+	.	Parent=Os08t0436600-01
Chr08	irgsp1_rep	three_prime_UTR	21211003	21211109	.	+	.	Parent=Os08t0436600-01
Chr08	irgsp1_rep	three_prime_UTR	21211429	21211744	.	+	.	Parent=Os08t0436600-01
Chr08	irgsp1_rep	mRNA	21218225	21220249	.	+	.	ID=Os08t0436700-01;Name=Os08t0436700-01;Locus_id=Os08g0436700;RAP-DB Gene Symbol Synonym(s)=ONAC063;CGSNL Gene Symbol=NAC63;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 63;Oryzabase Gene Symbol Synonym(s)=ONAC063%2C ONAC63;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 063%2C NAC domain-containing protein 63;Note=NAC transcription factor%2C Tolerance to salinity stress;Transcript_evidence=AK073013;ORF_evidence=Q6Z538;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=NAC domain superfamily (IPR036093),NAC domain (IPR003441);NIAS_FLcDNA=J033000B16;Manual Curation=October 30%2C 2020;Literature_PMID=19225807;Oryzabase=11492;Expression=AK073013;TENOR=Os08t0436700-01;KEGG=Os08t0436700-01;Subcellular location=nucleus (GO:0005634)
Chr08	irgsp1_rep	five_prime_UTR	21218225	21218350	.	+	.	Parent=Os08t0436700-01
Chr08	irgsp1_rep	CDS	21218351	21218537	.	+	0	Parent=Os08t0436700-01
Chr08	irgsp1_rep	CDS	21218877	21219178	.	+	2	Parent=Os08t0436700-01
Chr08	irgsp1_rep	CDS	21219275	21219943	.	+	0	Parent=Os08t0436700-01
Chr08	irgsp1_rep	three_prime_UTR	21219944	21220249	.	+	.	Parent=Os08t0436700-01
Chr08	irgsp1_rep	mRNA	21221307	21223052	.	-	.	ID=Os08t0436800-01;Name=Os08t0436800-01;Locus_id=Os08g0436800;Note=Similar to 60S ribosomal protein L34.;Transcript_evidence=AK062479 (DDBJ%2C Best hit);ORF_evidence=NP_001152435.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L34Ae (IPR008195),Ribosomal protein L34e%2C conserved site (IPR018065);NIAS_FLcDNA=001-103-G01;Expression=AK062479;TENOR=Os08t0436800-01;KEGG=Os08t0436800-01
Chr08	irgsp1_rep	five_prime_UTR	21222979	21223052	.	-	.	Parent=Os08t0436800-01
Chr08	irgsp1_rep	CDS	21222900	21222978	.	-	0	Parent=Os08t0436800-01
Chr08	irgsp1_rep	CDS	21222719	21222798	.	-	2	Parent=Os08t0436800-01
Chr08	irgsp1_rep	CDS	21221696	21221805	.	-	0	Parent=Os08t0436800-01
Chr08	irgsp1_rep	CDS	21221523	21221610	.	-	1	Parent=Os08t0436800-01
Chr08	irgsp1_rep	three_prime_UTR	21221307	21221522	.	-	.	Parent=Os08t0436800-01
Chr08	irgsp1_rep	mRNA	21232450	21237475	.	-	.	ID=Os08t0437050-01;Name=Os08t0437050-01;Locus_id=Os08g0437050;Note=Hypothetical conserved gene.;Transcript_evidence=AK288826 (DDBJ%2C Best hit);ORF_evidence=NP_001061728.2 (RefSeq);NIAS_FLcDNA=J090073I23;TENOR=Os08t0437050-01;KEGG=Os08t0437050-01
Chr08	irgsp1_rep	five_prime_UTR	21233014	21237475	.	-	.	Parent=Os08t0437050-01
Chr08	irgsp1_rep	CDS	21232903	21233013	.	-	0	Parent=Os08t0437050-01
Chr08	irgsp1_rep	three_prime_UTR	21232450	21232902	.	-	.	Parent=Os08t0437050-01
Chr08	irgsp1_rep	mRNA	21240597	21241862	.	+	.	ID=Os08t0437300-00;Name=Os08t0437300-00;Locus_id=Os08g0437300;Note=Similar to Typical P-type R2R3 Myb protein (Fragment).;Transcript_evidence=CT837778 (DDBJ%2C Best hit);ORF_evidence=Q8S3Y1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);TENOR=Os08t0437300-00
Chr08	irgsp1_rep	five_prime_UTR	21240597	21240818	.	+	.	Parent=Os08t0437300-00
Chr08	irgsp1_rep	CDS	21240819	21240951	.	+	0	Parent=Os08t0437300-00
Chr08	irgsp1_rep	CDS	21241048	21241177	.	+	2	Parent=Os08t0437300-00
Chr08	irgsp1_rep	CDS	21241338	21241862	.	+	1	Parent=Os08t0437300-00
Chr08	irgsp1_rep	mRNA	21256354	21257182	.	-	.	ID=Os08t0437566-00;Name=Os08t0437566-00;Locus_id=Os08g0437566;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);InterPro=Ribonuclease H1%2C N-terminal (IPR011320);TENOR=Os08t0437566-00
Chr08	irgsp1_rep	five_prime_UTR	21257179	21257182	.	-	.	Parent=Os08t0437566-00
Chr08	irgsp1_rep	CDS	21256354	21257178	.	-	0	Parent=Os08t0437566-00
Chr08	irgsp1_rep	mRNA	21260962	21261034	.	+	.	ID=Os08t0437832-00;Name=Os08t0437832-00;Locus_id=Os08g0437832;Note=Non-protein coding transcript.;Transcript_evidence=EU941912 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0437832-00
Chr08	irgsp1_rep	exon	21260962	21261034	.	+	.	Parent=Os08t0437832-00
Chr08	irgsp1_rep	mRNA	21280711	21281328	.	+	.	ID=Os08t0438100-01;Name=Os08t0438100-01;Locus_id=Os08g0438100;Note=Similar to ZF-HD homeobox protein.;Transcript_evidence=AK107904 (DDBJ%2C Best hit);ORF_evidence=NP_001151712.1 (RefSeq);InterPro=ZF-HD homeobox protein%2C Cys/His-rich dimerisation domain (IPR006456);NIAS_FLcDNA=002-134-F11;Expression=AK107904;TENOR=Os08t0438100-01;KEGG=Os08t0438100-01
Chr08	irgsp1_rep	five_prime_UTR	21280711	21280711	.	+	.	Parent=Os08t0438100-01
Chr08	irgsp1_rep	CDS	21280712	21280993	.	+	0	Parent=Os08t0438100-01
Chr08	irgsp1_rep	three_prime_UTR	21280994	21281328	.	+	.	Parent=Os08t0438100-01
Chr08	irgsp1_rep	mRNA	21307601	21309069	.	-	.	ID=Os08t0438400-01;Name=Os08t0438400-01;Locus_id=Os08g0438400;Note=Similar to ZF-HD homeobox protein.;Transcript_evidence=AK288007 (DDBJ%2C Best hit);ORF_evidence=NP_001149634.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Homeobox domain%2C ZF-HD class (IPR006455),ZF-HD homeobox protein%2C Cys/His-rich dimerisation domain (IPR006456),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);NIAS_FLcDNA=J075112P06;TENOR=Os08t0438400-01;KEGG=Os08t0438400-01
Chr08	irgsp1_rep	five_prime_UTR	21308963	21309069	.	-	.	Parent=Os08t0438400-01
Chr08	irgsp1_rep	CDS	21307962	21308962	.	-	0	Parent=Os08t0438400-01
Chr08	irgsp1_rep	CDS	21307883	21307898	.	-	1	Parent=Os08t0438400-01
Chr08	irgsp1_rep	three_prime_UTR	21307601	21307882	.	-	.	Parent=Os08t0438400-01
Chr08	irgsp1_rep	mRNA	21307920	21308994	.	+	.	ID=Os08t0438501-00;Name=Os08t0438501-00;Locus_id=Os08g0438501;Note=Hypothetical gene.;Transcript_evidence=EU946376 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0438501-00;KEGG=Os08t0438501-00
Chr08	irgsp1_rep	five_prime_UTR	21307920	21307970	.	+	.	Parent=Os08t0438501-00
Chr08	irgsp1_rep	CDS	21307971	21308432	.	+	0	Parent=Os08t0438501-00
Chr08	irgsp1_rep	three_prime_UTR	21308433	21308464	.	+	.	Parent=Os08t0438501-00
Chr08	irgsp1_rep	three_prime_UTR	21308561	21308994	.	+	.	Parent=Os08t0438501-00
Chr08	irgsp1_rep	mRNA	21314618	21317660	.	+	.	ID=Os08t0438600-01;Name=Os08t0438600-01;Locus_id=Os08g0438600;Note=Exostosin-like family protein.;Transcript_evidence=AK101476 (DDBJ%2C Best hit);ORF_evidence=NP_001151894.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);NIAS_FLcDNA=J033040O12;Expression=AK101476;TENOR=Os08t0438600-01;KEGG=Os08t0438600-01
Chr08	irgsp1_rep	five_prime_UTR	21314618	21314774	.	+	.	Parent=Os08t0438600-01
Chr08	irgsp1_rep	CDS	21314775	21314880	.	+	0	Parent=Os08t0438600-01
Chr08	irgsp1_rep	CDS	21315148	21316229	.	+	2	Parent=Os08t0438600-01
Chr08	irgsp1_rep	CDS	21316946	21317458	.	+	0	Parent=Os08t0438600-01
Chr08	irgsp1_rep	three_prime_UTR	21317459	21317660	.	+	.	Parent=Os08t0438600-01
Chr08	irgsp1_rep	mRNA	21314713	21317645	.	+	.	ID=Os08t0438600-02;Name=Os08t0438600-02;Locus_id=Os08g0438600;Note=Exostosin-like family protein.;Transcript_evidence=AK105915 (DDBJ%2C Best hit);ORF_evidence=NP_001151894.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);NIAS_FLcDNA=001-204-H08;Expression=AK105915;TENOR=Os08t0438600-02;KEGG=Os08t0438600-02
Chr08	irgsp1_rep	five_prime_UTR	21314713	21314774	.	+	.	Parent=Os08t0438600-02
Chr08	irgsp1_rep	CDS	21314775	21314880	.	+	0	Parent=Os08t0438600-02
Chr08	irgsp1_rep	CDS	21315148	21316229	.	+	2	Parent=Os08t0438600-02
Chr08	irgsp1_rep	CDS	21316946	21317458	.	+	0	Parent=Os08t0438600-02
Chr08	irgsp1_rep	three_prime_UTR	21317459	21317645	.	+	.	Parent=Os08t0438600-02
Chr08	irgsp1_rep	mRNA	21318141	21318416	.	-	.	ID=Os08t0438701-00;Name=Os08t0438701-00;Locus_id=Os08g0438701;Note=Hypothetical conserved gene.;Transcript_evidence=AB332081 (DDBJ%2C Best hit);ORF_evidence=Q6Z526 (UniProt);TENOR=Os08t0438701-00;KEGG=Os08t0438701-00
Chr08	irgsp1_rep	CDS	21318141	21318416	.	-	0	Parent=Os08t0438701-00
Chr08	irgsp1_rep	mRNA	21319778	21320348	.	-	.	ID=Os08t0438801-01;Name=Os08t0438801-01;Locus_id=Os08g0438801;Note=Hypothetical protein.;Transcript_evidence=AK287665 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065115B01;TENOR=Os08t0438801-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	21320106	21320348	.	-	0	Parent=Os08t0438801-01
Chr08	irgsp1_rep	three_prime_UTR	21319778	21320105	.	-	.	Parent=Os08t0438801-01
Chr08	irgsp1_rep	mRNA	21324677	21330254	.	-	.	ID=Os08t0439000-01;Name=Os08t0439000-01;Locus_id=Os08g0439000;Oryzabase Gene Symbol Synonym(s)=OsPFK07%2C PFK07%2C PFK7;Oryzabase Gene Name Synonym(s)=phosphofructokinase 7;Note=Similar to pyrophosphate--fructose 6-phosphate 1-phosphotransferase.;Transcript_evidence=AK287794 (DDBJ%2C Best hit);ORF_evidence=NP_001147085.1 (RefSeq);GO=Biological Process: glycolysis (GO:0006096),Cellular Component: 6-phosphofructokinase complex (GO:0005945),Molecular Function: 6-phosphofructokinase activity (GO:0003872);InterPro=Phosphofructokinase domain (IPR000023);NIAS_FLcDNA=J065174H24;Oryzabase=19615;TENOR=Os08t0439000-01;KEGG=Os08t0439000-01 (EC:2.7.1.11)
Chr08	irgsp1_rep	five_prime_UTR	21328825	21330254	.	-	.	Parent=Os08t0439000-01
Chr08	irgsp1_rep	CDS	21328442	21328824	.	-	0	Parent=Os08t0439000-01
Chr08	irgsp1_rep	CDS	21328257	21328338	.	-	1	Parent=Os08t0439000-01
Chr08	irgsp1_rep	CDS	21327883	21327956	.	-	0	Parent=Os08t0439000-01
Chr08	irgsp1_rep	CDS	21327581	21327692	.	-	1	Parent=Os08t0439000-01
Chr08	irgsp1_rep	CDS	21326938	21327033	.	-	0	Parent=Os08t0439000-01
Chr08	irgsp1_rep	CDS	21326779	21326862	.	-	0	Parent=Os08t0439000-01
Chr08	irgsp1_rep	three_prime_UTR	21326751	21326778	.	-	.	Parent=Os08t0439000-01
Chr08	irgsp1_rep	three_prime_UTR	21326579	21326653	.	-	.	Parent=Os08t0439000-01
Chr08	irgsp1_rep	three_prime_UTR	21326234	21326374	.	-	.	Parent=Os08t0439000-01
Chr08	irgsp1_rep	three_prime_UTR	21326024	21326140	.	-	.	Parent=Os08t0439000-01
Chr08	irgsp1_rep	three_prime_UTR	21325831	21325935	.	-	.	Parent=Os08t0439000-01
Chr08	irgsp1_rep	three_prime_UTR	21325637	21325715	.	-	.	Parent=Os08t0439000-01
Chr08	irgsp1_rep	three_prime_UTR	21325259	21325387	.	-	.	Parent=Os08t0439000-01
Chr08	irgsp1_rep	three_prime_UTR	21324677	21325136	.	-	.	Parent=Os08t0439000-01
Chr08	irgsp1_rep	mRNA	21337639	21352748	.	+	.	ID=Os08t0439100-01;Name=Os08t0439100-01;Locus_id=Os08g0439100;Oryzabase Gene Name Synonym(s)=DUF1336 domain containing protein;Note=Protein of unknown function DUF1336 domain containing protein.;Transcript_evidence=AK067282 (DDBJ%2C Best hit);ORF_evidence=NP_568526.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Pleckstrin homology domain (IPR001849),Lipid-binding START (IPR002913),Domain of unknown function DUF1336 (IPR009769),START-like domain (IPR023393);NIAS_FLcDNA=J013102K12;Oryzabase=22902;Expression=AK067282;TENOR=Os08t0439100-01;KEGG=Os08t0439100-01
Chr08	irgsp1_rep	five_prime_UTR	21337639	21337686	.	+	.	Parent=Os08t0439100-01
Chr08	irgsp1_rep	CDS	21337687	21337959	.	+	0	Parent=Os08t0439100-01
Chr08	irgsp1_rep	CDS	21338926	21339000	.	+	0	Parent=Os08t0439100-01
Chr08	irgsp1_rep	CDS	21339166	21339219	.	+	0	Parent=Os08t0439100-01
Chr08	irgsp1_rep	CDS	21339306	21339371	.	+	0	Parent=Os08t0439100-01
Chr08	irgsp1_rep	CDS	21340457	21340515	.	+	0	Parent=Os08t0439100-01
Chr08	irgsp1_rep	CDS	21340625	21340701	.	+	1	Parent=Os08t0439100-01
Chr08	irgsp1_rep	CDS	21341394	21341519	.	+	2	Parent=Os08t0439100-01
Chr08	irgsp1_rep	CDS	21342132	21342166	.	+	2	Parent=Os08t0439100-01
Chr08	irgsp1_rep	CDS	21342950	21343050	.	+	0	Parent=Os08t0439100-01
Chr08	irgsp1_rep	CDS	21343152	21343247	.	+	1	Parent=Os08t0439100-01
Chr08	irgsp1_rep	CDS	21343749	21343813	.	+	1	Parent=Os08t0439100-01
Chr08	irgsp1_rep	CDS	21345012	21345083	.	+	2	Parent=Os08t0439100-01
Chr08	irgsp1_rep	CDS	21345996	21346163	.	+	2	Parent=Os08t0439100-01
Chr08	irgsp1_rep	CDS	21346247	21346449	.	+	2	Parent=Os08t0439100-01
Chr08	irgsp1_rep	CDS	21346554	21346620	.	+	0	Parent=Os08t0439100-01
Chr08	irgsp1_rep	CDS	21347531	21347706	.	+	2	Parent=Os08t0439100-01
Chr08	irgsp1_rep	CDS	21348228	21348329	.	+	0	Parent=Os08t0439100-01
Chr08	irgsp1_rep	CDS	21349083	21349130	.	+	0	Parent=Os08t0439100-01
Chr08	irgsp1_rep	CDS	21350863	21351006	.	+	0	Parent=Os08t0439100-01
Chr08	irgsp1_rep	CDS	21351114	21351209	.	+	0	Parent=Os08t0439100-01
Chr08	irgsp1_rep	CDS	21351465	21351566	.	+	0	Parent=Os08t0439100-01
Chr08	irgsp1_rep	CDS	21352429	21352515	.	+	0	Parent=Os08t0439100-01
Chr08	irgsp1_rep	three_prime_UTR	21352516	21352748	.	+	.	Parent=Os08t0439100-01
Chr08	irgsp1_rep	mRNA	21358578	21359539	.	+	.	ID=Os08t0439150-00;Name=Os08t0439150-00;Locus_id=Os08g0439150;Note=Similar to DCN1-like protein 4.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001149792.1 (RefSeq);InterPro=Domain of unknown function DUF298 (IPR005176),Defective-in-cullin neddylation protein (IPR014764);TENOR=Os08t0439150-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	21358578	21358610	.	+	0	Parent=Os08t0439150-00
Chr08	irgsp1_rep	CDS	21358710	21358793	.	+	0	Parent=Os08t0439150-00
Chr08	irgsp1_rep	CDS	21359062	21359122	.	+	0	Parent=Os08t0439150-00
Chr08	irgsp1_rep	CDS	21359202	21359308	.	+	2	Parent=Os08t0439150-00
Chr08	irgsp1_rep	CDS	21359403	21359468	.	+	0	Parent=Os08t0439150-00
Chr08	irgsp1_rep	CDS	21359519	21359539	.	+	0	Parent=Os08t0439150-00
Chr08	irgsp1_rep	mRNA	21359673	21360717	.	+	.	ID=Os08t0439200-01;Name=Os08t0439200-01;Locus_id=Os08g0439200;Note=Non-protein coding transcript.;Transcript_evidence=AK059480 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-028-F04;TENOR=Os08t0439200-01
Chr08	irgsp1_rep	exon	21359673	21359757	.	+	.	Parent=Os08t0439200-01
Chr08	irgsp1_rep	exon	21360276	21360717	.	+	.	Parent=Os08t0439200-01
Chr08	irgsp1_rep	mRNA	21393334	21394802	.	+	.	ID=Os08t0439600-00;Name=Os08t0439600-00;Locus_id=Os08g0439600;Note=Protein of unknown function DUF868%2C plant family protein.;Transcript_evidence=BT070111 (DDBJ);ORF_evidence=NP_001061898.1 (RefSeq);InterPro=Protein of unknown function DUF868%2C plant (IPR008586);TENOR=Os08t0439600-00;KEGG=Os08t0439600-00
Chr08	irgsp1_rep	five_prime_UTR	21393334	21393488	.	+	.	Parent=Os08t0439600-00
Chr08	irgsp1_rep	CDS	21393489	21394709	.	+	0	Parent=Os08t0439600-00
Chr08	irgsp1_rep	three_prime_UTR	21394710	21394802	.	+	.	Parent=Os08t0439600-00
Chr08	irgsp1_rep	mRNA	21397710	21399445	.	+	.	ID=Os08t0439900-01;Name=Os08t0439900-01;Locus_id=Os08g0439900;Note=Mitochondrial glycoprotein family protein.;Transcript_evidence=AK110628 (DDBJ%2C Best hit);ORF_evidence=NP_001150060.1 (RefSeq);GO=Cellular Component: mitochondrial matrix (GO:0005759);InterPro=Mitochondrial glycoprotein (IPR003428);NIAS_FLcDNA=002-169-B06;Expression=AK110628;TENOR=Os08t0439900-01;KEGG=Os08t0439900-01
Chr08	irgsp1_rep	five_prime_UTR	21397710	21397765	.	+	.	Parent=Os08t0439900-01
Chr08	irgsp1_rep	CDS	21397766	21398307	.	+	0	Parent=Os08t0439900-01
Chr08	irgsp1_rep	CDS	21399040	21399199	.	+	1	Parent=Os08t0439900-01
Chr08	irgsp1_rep	three_prime_UTR	21399200	21399445	.	+	.	Parent=Os08t0439900-01
Chr08	irgsp1_rep	mRNA	21400079	21403435	.	-	.	ID=Os08t0440000-01;Name=Os08t0440000-01;Locus_id=Os08g0440000;Note=Vesicle transport v-SNARE family protein.;Transcript_evidence=AK102539 (DDBJ%2C Best hit);ORF_evidence=NP_001151079.1 (RefSeq);GO=Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888),Cellular Component: Golgi membrane (GO:0000139),Cellular Component: cis-Golgi network (GO:0005801),Cellular Component: integral to membrane (GO:0016021);InterPro=Golgi SNAP receptor complex%2C subunit 1 (IPR023601);NIAS_FLcDNA=J033096J21;TENOR=Os08t0440000-01
Chr08	irgsp1_rep	five_prime_UTR	21403209	21403435	.	-	.	Parent=Os08t0440000-01
Chr08	irgsp1_rep	CDS	21403173	21403208	.	-	0	Parent=Os08t0440000-01
Chr08	irgsp1_rep	CDS	21401810	21402037	.	-	0	Parent=Os08t0440000-01
Chr08	irgsp1_rep	CDS	21401425	21401586	.	-	0	Parent=Os08t0440000-01
Chr08	irgsp1_rep	CDS	21400491	21400604	.	-	0	Parent=Os08t0440000-01
Chr08	irgsp1_rep	CDS	21400283	21400396	.	-	0	Parent=Os08t0440000-01
Chr08	irgsp1_rep	three_prime_UTR	21400079	21400282	.	-	.	Parent=Os08t0440000-01
Chr08	irgsp1_rep	mRNA	21400087	21403379	.	-	.	ID=Os08t0440000-02;Name=Os08t0440000-02;Locus_id=Os08g0440000;Note=Vesicle transport v-SNARE family protein.;Transcript_evidence=AK060959 (DDBJ%2C Best hit);ORF_evidence=NP_001151079.1 (RefSeq);GO=Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888),Cellular Component: Golgi membrane (GO:0000139),Cellular Component: cis-Golgi network (GO:0005801),Cellular Component: integral to membrane (GO:0016021);InterPro=Golgi SNAP receptor complex%2C subunit 1 (IPR023601);NIAS_FLcDNA=006-201-H08;TENOR=Os08t0440000-02
Chr08	irgsp1_rep	five_prime_UTR	21403209	21403379	.	-	.	Parent=Os08t0440000-02
Chr08	irgsp1_rep	CDS	21403173	21403208	.	-	0	Parent=Os08t0440000-02
Chr08	irgsp1_rep	CDS	21401810	21402037	.	-	0	Parent=Os08t0440000-02
Chr08	irgsp1_rep	CDS	21401425	21401586	.	-	0	Parent=Os08t0440000-02
Chr08	irgsp1_rep	CDS	21400491	21400604	.	-	0	Parent=Os08t0440000-02
Chr08	irgsp1_rep	CDS	21400283	21400396	.	-	0	Parent=Os08t0440000-02
Chr08	irgsp1_rep	three_prime_UTR	21400087	21400282	.	-	.	Parent=Os08t0440000-02
Chr08	irgsp1_rep	mRNA	21407493	21408446	.	+	.	ID=Os08t0440100-01;Name=Os08t0440100-01;Locus_id=Os08g0440100;Note=Similar to Temperature stress-induced lipocalin.;Transcript_evidence=AK068551 (DDBJ%2C Best hit);ORF_evidence=Q38JE5 (UniProt);GO=Biological Process: transport (GO:0006810),Molecular Function: transporter activity (GO:0005215),Molecular Function: binding (GO:0005488);InterPro=Lipocalin/cytosolic fatty-acid binding protein domain (IPR000566),Lipocalin%2C bacterial (IPR002446),Calycin-like (IPR011038),Calycin (IPR012674),Lipocalin%2C ApoD type (IPR022271),Lipocalin conserved site (IPR022272);NIAS_FLcDNA=J013155M04;Expression=AK068551;TENOR=Os08t0440100-01;KEGG=Os08t0440100-01
Chr08	irgsp1_rep	five_prime_UTR	21407493	21407585	.	+	.	Parent=Os08t0440100-01
Chr08	irgsp1_rep	CDS	21407586	21407942	.	+	0	Parent=Os08t0440100-01
Chr08	irgsp1_rep	CDS	21408038	21408220	.	+	0	Parent=Os08t0440100-01
Chr08	irgsp1_rep	three_prime_UTR	21408221	21408446	.	+	.	Parent=Os08t0440100-01
Chr08	irgsp1_rep	mRNA	21410971	21417167	.	+	.	ID=Os08t0440200-01;Name=Os08t0440200-01;Locus_id=Os08g0440200;Oryzabase Gene Symbol Synonym(s)=OsCAF1-11;Oryzabase Gene Name Synonym(s)=CCR4-associated factor 1-11%2C carbon catabolite repressor 4-associated factor 1-11;Note=Ribonuclease CAF1 family protein.;Transcript_evidence=AK121617 (DDBJ%2C Best hit);ORF_evidence=B9G150 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676);InterPro=Ribonuclease CAF1 (IPR006941),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J033044G08;Oryzabase=18270;Expression=AK121617;TENOR=Os08t0440200-01;KEGG=Os08t0440200-01
Chr08	irgsp1_rep	five_prime_UTR	21410971	21411151	.	+	.	Parent=Os08t0440200-01
Chr08	irgsp1_rep	CDS	21411152	21411444	.	+	0	Parent=Os08t0440200-01
Chr08	irgsp1_rep	CDS	21413618	21413748	.	+	1	Parent=Os08t0440200-01
Chr08	irgsp1_rep	CDS	21413834	21414016	.	+	2	Parent=Os08t0440200-01
Chr08	irgsp1_rep	CDS	21414092	21414204	.	+	2	Parent=Os08t0440200-01
Chr08	irgsp1_rep	CDS	21414719	21414874	.	+	0	Parent=Os08t0440200-01
Chr08	irgsp1_rep	three_prime_UTR	21414875	21415044	.	+	.	Parent=Os08t0440200-01
Chr08	irgsp1_rep	three_prime_UTR	21415131	21415346	.	+	.	Parent=Os08t0440200-01
Chr08	irgsp1_rep	three_prime_UTR	21415513	21417167	.	+	.	Parent=Os08t0440200-01
Chr08	irgsp1_rep	mRNA	21418749	21419969	.	+	.	ID=Os08t0440300-01;Name=Os08t0440300-01;Locus_id=Os08g0440300;RAP-DB Gene Symbol Synonym(s)=OsCAF1A%2C OsCAF1-12;RAP-DB Gene Name Synonym(s)=CCR4-associated factor 1A%2C carbon cataboliterepressor 4-associated factor 1A%2C CCR4-associated factor 1-12;Oryzabase Gene Symbol Synonym(s)=OsCAF1A%2C CAF1A%2C OsCAF1-12;Oryzabase Gene Name Synonym(s)=CCR4-associated factor 1A%2C carbon catabolite repressor 4-associated factor 1A%2C CCR4-associated factor 1-12;Note=Component of the CCR4-NOTcomplex%2C Deadenylase%2C Deadenylation (poly(A) tail shortening)%2C Development and stress response;Transcript_evidence=AK103781,AK109485;ORF_evidence=Q6Z9G7;GO=Molecular Function: nucleic acid binding (GO:0003676),Cellular Component: nucleus (GO:0005634);InterPro=Ribonuclease CAF1 (IPR006941),Ribonuclease H-like domain (IPR012337);NIAS_FLcDNA=J033145G16, 001-202-H04;Manual Curation=July 27%2C 2015;Literature_PMID=24805883;Oryzabase=18144;Expression=AK103781;TENOR=Os08t0440300-01;KEGG=Os08t0440300-01
Chr08	irgsp1_rep	five_prime_UTR	21418749	21419039	.	+	.	Parent=Os08t0440300-01
Chr08	irgsp1_rep	CDS	21419040	21419906	.	+	0	Parent=Os08t0440300-01
Chr08	irgsp1_rep	three_prime_UTR	21419907	21419969	.	+	.	Parent=Os08t0440300-01
Chr08	irgsp1_rep	mRNA	21418859	21420117	.	+	.	ID=Os08t0440300-03;Name=Os08t0440300-03;Locus_id=Os08g0440300;Oryzabase Gene Symbol Synonym(s)=OsCAF1A%2C CAF1A%2C OsCAF1-12;Oryzabase Gene Name Synonym(s)=CCR4-associated factor 1A%2C carbon catabolite repressor 4-associated factor 1A%2C CCR4-associated factor 1-12;Note=Ribonuclease CAF1 family protein.;Transcript_evidence=AK105990 (DDBJ%2C Best hit);ORF_evidence=B4FG48 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676);InterPro=Ribonuclease CAF1 (IPR006941),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=001-205-G12;Oryzabase=18144;Expression=AK105990;TENOR=Os08t0440300-03;KEGG=Os08t0440300-03
Chr08	irgsp1_rep	five_prime_UTR	21418859	21419039	.	+	.	Parent=Os08t0440300-03
Chr08	irgsp1_rep	CDS	21419040	21419906	.	+	0	Parent=Os08t0440300-03
Chr08	irgsp1_rep	three_prime_UTR	21419907	21420117	.	+	.	Parent=Os08t0440300-03
Chr08	irgsp1_rep	mRNA	21419625	21421093	.	+	.	ID=Os08t0440300-04;Name=Os08t0440300-04;Locus_id=Os08g0440300;Oryzabase Gene Symbol Synonym(s)=OsCAF1A%2C CAF1A%2C OsCAF1-12;Oryzabase Gene Name Synonym(s)=CCR4-associated factor 1A%2C carbon catabolite repressor 4-associated factor 1A%2C CCR4-associated factor 1-12;Note=Ribonuclease CAF1 family protein.;Transcript_evidence=AK107167 (DDBJ%2C Best hit);ORF_evidence=B4FG48 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676);InterPro=Ribonuclease CAF1 (IPR006941),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=002-124-F10;Oryzabase=18144;Expression=AK107167;TENOR=Os08t0440300-04;KEGG=Os08t0440300-04
Chr08	irgsp1_rep	CDS	21419625	21419906	.	+	0	Parent=Os08t0440300-04
Chr08	irgsp1_rep	three_prime_UTR	21419907	21421093	.	+	.	Parent=Os08t0440300-04
Chr08	irgsp1_rep	mRNA	21433598	21436735	.	-	.	ID=Os08t0440500-01;Name=Os08t0440500-01;Locus_id=Os08g0440500;Note=MIR domain containing protein.;Transcript_evidence=AK058761 (DDBJ%2C Best hit);ORF_evidence=B6TVP8 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=MIR (IPR003608),MIR motif (IPR016093);NIAS_FLcDNA=001-001-B11;Expression=AK058761;TENOR=Os08t0440500-01;KEGG=Os08t0440500-01 (EC:2.4.1.109)
Chr08	irgsp1_rep	five_prime_UTR	21436493	21436735	.	-	.	Parent=Os08t0440500-01
Chr08	irgsp1_rep	CDS	21436385	21436492	.	-	0	Parent=Os08t0440500-01
Chr08	irgsp1_rep	CDS	21436148	21436288	.	-	0	Parent=Os08t0440500-01
Chr08	irgsp1_rep	CDS	21435450	21435590	.	-	0	Parent=Os08t0440500-01
Chr08	irgsp1_rep	CDS	21434644	21434693	.	-	0	Parent=Os08t0440500-01
Chr08	irgsp1_rep	CDS	21434429	21434558	.	-	1	Parent=Os08t0440500-01
Chr08	irgsp1_rep	CDS	21433911	21433994	.	-	0	Parent=Os08t0440500-01
Chr08	irgsp1_rep	three_prime_UTR	21433598	21433910	.	-	.	Parent=Os08t0440500-01
Chr08	irgsp1_rep	mRNA	21445787	21450773	.	+	.	ID=Os08t0440800-01;Name=Os08t0440800-01;Locus_id=Os08g0440800;CGSNL Gene Symbol=ALDH11A3;CGSNL Gene Name=ALDEHYDE DEHYDROGENASE 11A3;Oryzabase Gene Symbol Synonym(s)=OsALDH11A3%2C GAPN;Oryzabase Gene Name Synonym(s)=NADP-dependent glyceraldehyde-3-phosphate dehydrogenase%2C Aldehyde dehydrogenase 11A3;Note=Glyceraldehyde-3-phosphate dehydrogenase.;Transcript_evidence=AK071520 (DDBJ%2C Best hit);ORF_evidence=Q8S4Y9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620);InterPro=Aldehyde dehydrogenase domain (IPR015590),Aldehyde dehydrogenase%2C conserved site (IPR016160),Aldehyde/histidinol dehydrogenase (IPR016161),Aldehyde dehydrogenase%2C N-terminal (IPR016162),Aldehyde dehydrogenase%2C C-terminal (IPR016163);NIAS_FLcDNA=J023100G04;Oryzabase=16033;Expression=AK071520;TENOR=Os08t0440800-01;KEGG=Os08t0440800-01 (EC:1.2.1.9)
Chr08	irgsp1_rep	five_prime_UTR	21445787	21446088	.	+	.	Parent=Os08t0440800-01
Chr08	irgsp1_rep	CDS	21446089	21446242	.	+	0	Parent=Os08t0440800-01
Chr08	irgsp1_rep	CDS	21446710	21446903	.	+	2	Parent=Os08t0440800-01
Chr08	irgsp1_rep	CDS	21447010	21447138	.	+	0	Parent=Os08t0440800-01
Chr08	irgsp1_rep	CDS	21448793	21448912	.	+	0	Parent=Os08t0440800-01
Chr08	irgsp1_rep	CDS	21448992	21449128	.	+	0	Parent=Os08t0440800-01
Chr08	irgsp1_rep	CDS	21449210	21449365	.	+	1	Parent=Os08t0440800-01
Chr08	irgsp1_rep	CDS	21449806	21450184	.	+	1	Parent=Os08t0440800-01
Chr08	irgsp1_rep	CDS	21450282	21450398	.	+	0	Parent=Os08t0440800-01
Chr08	irgsp1_rep	CDS	21450499	21450612	.	+	0	Parent=Os08t0440800-01
Chr08	irgsp1_rep	three_prime_UTR	21450613	21450773	.	+	.	Parent=Os08t0440800-01
Chr08	irgsp1_rep	mRNA	21446699	21446953	.	-	.	ID=Os08t0440850-00;Name=Os08t0440850-00;Locus_id=Os08g0440850;Note=Hypothetical gene.;Transcript_evidence=EU945888 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0440850-00
Chr08	irgsp1_rep	five_prime_UTR	21446952	21446953	.	-	.	Parent=Os08t0440850-00
Chr08	irgsp1_rep	CDS	21446699	21446951	.	-	0	Parent=Os08t0440850-00
Chr08	irgsp1_rep	mRNA	21450964	21453701	.	-	.	ID=Os08t0440900-01;Name=Os08t0440900-01;Locus_id=Os08g0440900;Note=Similar to Omega-6 fatty acid desaturase%2C chloroplast precursor (EC 1.14.19.-).;Transcript_evidence=AK060449 (DDBJ%2C Best hit);ORF_evidence=E6Y9A8 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629);InterPro=Fatty acid desaturase%2C type 1 (IPR005804);NIAS_FLcDNA=001-011-F10;Expression=AK060449;TENOR=Os08t0440900-01;KEGG=Os08t0440900-01 (EC:1.14.19.-)
Chr08	irgsp1_rep	five_prime_UTR	21453700	21453701	.	-	.	Parent=Os08t0440900-01
Chr08	irgsp1_rep	CDS	21453541	21453699	.	-	0	Parent=Os08t0440900-01
Chr08	irgsp1_rep	CDS	21452610	21452728	.	-	0	Parent=Os08t0440900-01
Chr08	irgsp1_rep	CDS	21451615	21451729	.	-	1	Parent=Os08t0440900-01
Chr08	irgsp1_rep	CDS	21451353	21451514	.	-	0	Parent=Os08t0440900-01
Chr08	irgsp1_rep	three_prime_UTR	21450964	21451352	.	-	.	Parent=Os08t0440900-01
Chr08	irgsp1_rep	mRNA	21467453	21468593	.	+	.	ID=Os08t0441100-01;Name=Os08t0441100-01;Locus_id=Os08g0441100;CGSNL Gene Symbol=CIPK06;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 6;Oryzabase Gene Symbol Synonym(s)=OsCIPK06%2C CIPK6%2C OsCIPK6;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 6;Note=Similar to PnC401 homologue.;Transcript_evidence=AK108225 (DDBJ%2C Best hit);ORF_evidence=Q6Z9F4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),NAF domain (IPR004041),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),NAF/FISL domain (IPR018451);NIAS_FLcDNA=002-140-F03;Oryzabase=7393;Expression=AK108225;TENOR=Os08t0441100-01;KEGG=Os08t0441100-01
Chr08	irgsp1_rep	five_prime_UTR	21467453	21467454	.	+	.	Parent=Os08t0441100-01
Chr08	irgsp1_rep	CDS	21467455	21468369	.	+	0	Parent=Os08t0441100-01
Chr08	irgsp1_rep	three_prime_UTR	21468370	21468593	.	+	.	Parent=Os08t0441100-01
Chr08	irgsp1_rep	mRNA	21487566	21487766	.	+	.	ID=Os08t0441300-01;Name=Os08t0441300-01;Locus_id=Os08g0441300;RAP-DB Gene Symbol Synonym(s)=Osmtd1;RAP-DB Gene Name Synonym(s)=multi-tillering and dwarf mutant 1;Oryzabase Gene Symbol Synonym(s)=Osmtd1;Oryzabase Gene Name Synonym(s)=multi-tillering and dwarf mutant 1;Note=Putative protease inhibitor I family protein%2C Control of plant architecture;Transcript_evidence=Inferred from literature;ORF_evidence=A0A0F7DE45;GO=Biological Process: response to wounding (GO:0009611),Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Proteinase inhibitor I13%2C potato inhibitor I superfamily (IPR036354),Proteinase inhibitor I13%2C potato inhibitor I (IPR000864);Manual Curation=November 16%2C 2017;Literature_PMID=25677853;Oryzabase=19183;TENOR=Os08t0441300-00;KEGG=Os08t0441300-00
Chr08	irgsp1_rep	CDS	21487566	21487766	.	+	0	Parent=Os08t0441300-01
Chr08	irgsp1_rep	mRNA	21500904	21505157	.	+	.	ID=Os08t0441400-01;Name=Os08t0441400-01;Locus_id=Os08g0441400;Note=CytoChrome c oxidase%2C subunit VIb domain containing protein.;Transcript_evidence=AK064141 (DDBJ%2C Best hit);ORF_evidence=A2YVM3 (UniProt);GO=Cellular Component: mitochondrion (GO:0005739),Molecular Function: cytoChrome-c oxidase activity (GO:0004129);InterPro=CytoChrome c oxidase%2C subunit VIb (IPR003213);NIAS_FLcDNA=002-103-A11;Expression=AK064141;TENOR=Os08t0441400-01;KEGG=Os08t0441400-01
Chr08	irgsp1_rep	five_prime_UTR	21500904	21500936	.	+	.	Parent=Os08t0441400-01
Chr08	irgsp1_rep	CDS	21500937	21501053	.	+	0	Parent=Os08t0441400-01
Chr08	irgsp1_rep	CDS	21501153	21501290	.	+	0	Parent=Os08t0441400-01
Chr08	irgsp1_rep	CDS	21501375	21501491	.	+	0	Parent=Os08t0441400-01
Chr08	irgsp1_rep	three_prime_UTR	21504941	21505157	.	+	.	Parent=Os08t0441400-01
Chr08	irgsp1_rep	mRNA	21500906	21501667	.	+	.	ID=Os08t0441400-02;Name=Os08t0441400-02;Locus_id=Os08g0441400;Note=CytoChrome c oxidase%2C subunit VIb domain containing protein.;Transcript_evidence=AK063317 (DDBJ%2C Best hit);ORF_evidence=A2YVM3 (UniProt);GO=Cellular Component: mitochondrion (GO:0005739),Molecular Function: cytoChrome-c oxidase activity (GO:0004129);InterPro=CytoChrome c oxidase%2C subunit VIb (IPR003213);NIAS_FLcDNA=001-113-G10;Expression=AK063317;TENOR=Os08t0441400-02;KEGG=Os08t0441400-02
Chr08	irgsp1_rep	five_prime_UTR	21500906	21500936	.	+	.	Parent=Os08t0441400-02
Chr08	irgsp1_rep	CDS	21500937	21501053	.	+	0	Parent=Os08t0441400-02
Chr08	irgsp1_rep	CDS	21501153	21501290	.	+	0	Parent=Os08t0441400-02
Chr08	irgsp1_rep	CDS	21501375	21501491	.	+	0	Parent=Os08t0441400-02
Chr08	irgsp1_rep	three_prime_UTR	21501492	21501667	.	+	.	Parent=Os08t0441400-02
Chr08	irgsp1_rep	mRNA	21506475	21513656	.	-	.	ID=Os08t0441500-01;Name=Os08t0441500-01;Locus_id=Os08g0441500;RAP-DB Gene Symbol Synonym(s)=OsCCR%2C CCR%2C OsCCR14%2C OsCCR20;RAP-DB Gene Name Synonym(s)=cinnamoyl-CoA reductase;CGSNL Gene Symbol=CCR20;CGSNL Gene Name=CINNAMOYL-COA REDUCTASE 20;Oryzabase Gene Symbol Synonym(s)=OS-CCR%2C OsCCR%2C CCR%2C OsCCR20%2C OsCCR14%2C CCR14;Oryzabase Gene Name Synonym(s)=cinnamoyl-CoA reductase%2C cinnamoyl CoA reductase 20;Note=Cinnamoyl-CoA reductase%2C Lignin formation;Transcript_evidence=AK105870,AK072872,AK105802;ORF_evidence=Q6Z9E7;GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD(P)-binding domain superfamily (IPR036291),NAD-dependent epimerase/dehydratase (IPR001509);NIAS_FLcDNA=001-204-A12,J023143B20,001-203-A12;Manual Curation=March 9%2C 2018;Literature_PMID=29295941;Oryzabase=15160;TENOR=Os08t0441500-01
Chr08	irgsp1_rep	five_prime_UTR	21513487	21513656	.	-	.	Parent=Os08t0441500-01
Chr08	irgsp1_rep	CDS	21513309	21513486	.	-	0	Parent=Os08t0441500-01
Chr08	irgsp1_rep	CDS	21513060	21513214	.	-	2	Parent=Os08t0441500-01
Chr08	irgsp1_rep	CDS	21512702	21512890	.	-	0	Parent=Os08t0441500-01
Chr08	irgsp1_rep	CDS	21510206	21510558	.	-	0	Parent=Os08t0441500-01
Chr08	irgsp1_rep	CDS	21506658	21506868	.	-	1	Parent=Os08t0441500-01
Chr08	irgsp1_rep	three_prime_UTR	21506475	21506657	.	-	.	Parent=Os08t0441500-01
Chr08	irgsp1_rep	mRNA	21512567	21513655	.	-	.	ID=Os08t0441500-02;Name=Os08t0441500-02;Locus_id=Os08g0441500;CGSNL Gene Symbol=CCR20;CGSNL Gene Name=CINNAMOYL-COA REDUCTASE 20;Oryzabase Gene Symbol Synonym(s)=OS-CCR%2C OsCCR%2C CCR%2C OsCCR20%2C OsCCR14%2C CCR14;Oryzabase Gene Name Synonym(s)=cinnamoyl-CoA reductase%2C cinnamoyl CoA reductase 20;Note=Similar to cinnamoyl CoA reductase.;Transcript_evidence=AK102061 (DDBJ%2C Best hit);ORF_evidence=XP_002299260.1 (RefSeq);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033082D10;Oryzabase=15160;Expression=AK102061;TENOR=Os08t0441500-02;KEGG=Os08t0441500-02 (EC:1.2.1.44)
Chr08	irgsp1_rep	five_prime_UTR	21513487	21513655	.	-	.	Parent=Os08t0441500-02
Chr08	irgsp1_rep	CDS	21513256	21513486	.	-	0	Parent=Os08t0441500-02
Chr08	irgsp1_rep	three_prime_UTR	21512567	21513255	.	-	.	Parent=Os08t0441500-02
Chr08	irgsp1_rep	mRNA	21523475	21525761	.	+	.	ID=Os08t0441600-01;Name=Os08t0441600-01;Locus_id=Os08g0441600;Note=Similar to Chorismate mutase CM2 (EC 5.4.99.5) (Chorimate mutase).;Transcript_evidence=AK069725 (DDBJ%2C Best hit);ORF_evidence=B4FUP5 (UniProt);GO=Biological Process: aromatic amino acid family biosynthetic process (GO:0009073),Biological Process: chorismate metabolic process (GO:0046417),Molecular Function: chorismate mutase activity (GO:0004106);InterPro=Chorismate mutase%2C AroQ class%2C eukaryotic type (IPR008238),Chorismate mutase%2C type II (IPR020822);NIAS_FLcDNA=J023027D10;Expression=AK069725;TENOR=Os08t0441600-01;KEGG=Os08t0441600-01 (EC:5.4.99.5)
Chr08	irgsp1_rep	five_prime_UTR	21523475	21523546	.	+	.	Parent=Os08t0441600-01
Chr08	irgsp1_rep	CDS	21523547	21523825	.	+	0	Parent=Os08t0441600-01
Chr08	irgsp1_rep	CDS	21524756	21524842	.	+	0	Parent=Os08t0441600-01
Chr08	irgsp1_rep	CDS	21524946	21525089	.	+	0	Parent=Os08t0441600-01
Chr08	irgsp1_rep	CDS	21525178	21525270	.	+	0	Parent=Os08t0441600-01
Chr08	irgsp1_rep	CDS	21525397	21525648	.	+	0	Parent=Os08t0441600-01
Chr08	irgsp1_rep	three_prime_UTR	21525649	21525761	.	+	.	Parent=Os08t0441600-01
Chr08	irgsp1_rep	mRNA	21531338	21533813	.	-	.	ID=Os08t0441900-00;Name=Os08t0441900-00;Locus_id=Os08g0441900;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6Z9E5 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C U1-type (IPR003604),Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);TENOR=Os08t0441900-00;KEGG=Os08t0441900-00
Chr08	irgsp1_rep	CDS	21533738	21533813	.	-	0	Parent=Os08t0441900-00
Chr08	irgsp1_rep	CDS	21533041	21533411	.	-	2	Parent=Os08t0441900-00
Chr08	irgsp1_rep	CDS	21531795	21531905	.	-	0	Parent=Os08t0441900-00
Chr08	irgsp1_rep	CDS	21531338	21531766	.	-	0	Parent=Os08t0441900-00
Chr08	irgsp1_rep	mRNA	21539571	21543115	.	-	.	ID=Os08t0442000-01;Name=Os08t0442000-01;Locus_id=Os08g0442000;Note=Protein of unknown function DUF566 family protein.;Transcript_evidence=AK109682 (DDBJ%2C Best hit);ORF_evidence=A3BTK0 (UniProt);InterPro=Protein of unknown function DUF566 (IPR007573);NIAS_FLcDNA=002-145-D06;TENOR=Os08t0442000-01
Chr08	irgsp1_rep	five_prime_UTR	21542856	21543115	.	-	.	Parent=Os08t0442000-01
Chr08	irgsp1_rep	five_prime_UTR	21540823	21540958	.	-	.	Parent=Os08t0442000-01
Chr08	irgsp1_rep	CDS	21539571	21540822	.	-	0	Parent=Os08t0442000-01
Chr08	irgsp1_rep	mRNA	21549721	21551326	.	-	.	ID=Os08t0442200-01;Name=Os08t0442200-01;Locus_id=Os08g0442200;Oryzabase Gene Symbol Synonym(s)=OsSTRL14%2C STRL14;Oryzabase Gene Name Synonym(s)=STR-like 14;Note=Six-bladed beta-propeller%2C TolB-like domain containing protein.;Transcript_evidence=AK073494 (DDBJ%2C Best hit);ORF_evidence=NP_001150945.1 (RefSeq);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: strictosidine synthase activity (GO:0016844);InterPro=Six-bladed beta-propeller%2C TolB-like (IPR011042),Strictosidine synthase%2C conserved region (IPR018119);NIAS_FLcDNA=J033044F17;Oryzabase=21797;Expression=AK073494;TENOR=Os08t0442200-01;KEGG=Os08t0442200-01
Chr08	irgsp1_rep	five_prime_UTR	21551257	21551326	.	-	.	Parent=Os08t0442200-01
Chr08	irgsp1_rep	CDS	21550961	21551256	.	-	0	Parent=Os08t0442200-01
Chr08	irgsp1_rep	CDS	21550485	21550751	.	-	1	Parent=Os08t0442200-01
Chr08	irgsp1_rep	CDS	21549881	21550370	.	-	1	Parent=Os08t0442200-01
Chr08	irgsp1_rep	three_prime_UTR	21549721	21549880	.	-	.	Parent=Os08t0442200-01
Chr08	irgsp1_rep	mRNA	21549758	21550731	.	-	.	ID=Os08t0442200-02;Name=Os08t0442200-02;Locus_id=Os08g0442200;Oryzabase Gene Symbol Synonym(s)=OsSTRL14%2C STRL14;Oryzabase Gene Name Synonym(s)=STR-like 14;Note=Similar to strictosidine synthase 1.;Transcript_evidence=AK066840 (DDBJ%2C Best hit);ORF_evidence=NP_001150945.1 (RefSeq);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: strictosidine synthase activity (GO:0016844);InterPro=Six-bladed beta-propeller%2C TolB-like (IPR011042),Strictosidine synthase%2C conserved region (IPR018119);NIAS_FLcDNA=J013088M11;Oryzabase=21797;Expression=AK066840;TENOR=Os08t0442200-02;KEGG=Os08t0442200-02
Chr08	irgsp1_rep	five_prime_UTR	21550730	21550731	.	-	.	Parent=Os08t0442200-02
Chr08	irgsp1_rep	CDS	21550485	21550729	.	-	0	Parent=Os08t0442200-02
Chr08	irgsp1_rep	CDS	21549881	21550370	.	-	1	Parent=Os08t0442200-02
Chr08	irgsp1_rep	three_prime_UTR	21549758	21549880	.	-	.	Parent=Os08t0442200-02
Chr08	irgsp1_rep	mRNA	21551904	21554369	.	+	.	ID=Os08t0442300-01;Name=Os08t0442300-01;Locus_id=Os08g0442300;Note=Similar to Calcineurin subunit B.;Transcript_evidence=AK059843 (DDBJ%2C Best hit);ORF_evidence=B6T814 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249);NIAS_FLcDNA=006-206-D12;Expression=AK059843;TENOR=Os08t0442300-01;KEGG=Os08t0442300-01
Chr08	irgsp1_rep	five_prime_UTR	21551904	21552050	.	+	.	Parent=Os08t0442300-01
Chr08	irgsp1_rep	five_prime_UTR	21552177	21552253	.	+	.	Parent=Os08t0442300-01
Chr08	irgsp1_rep	CDS	21552254	21552323	.	+	0	Parent=Os08t0442300-01
Chr08	irgsp1_rep	CDS	21552448	21552572	.	+	2	Parent=Os08t0442300-01
Chr08	irgsp1_rep	CDS	21552714	21552810	.	+	0	Parent=Os08t0442300-01
Chr08	irgsp1_rep	CDS	21552901	21553010	.	+	2	Parent=Os08t0442300-01
Chr08	irgsp1_rep	CDS	21553543	21553617	.	+	0	Parent=Os08t0442300-01
Chr08	irgsp1_rep	CDS	21554066	21554116	.	+	0	Parent=Os08t0442300-01
Chr08	irgsp1_rep	three_prime_UTR	21554117	21554369	.	+	.	Parent=Os08t0442300-01
Chr08	irgsp1_rep	mRNA	21551993	21554403	.	+	.	ID=Os08t0442300-02;Name=Os08t0442300-02;Locus_id=Os08g0442300;Note=Similar to Calcineurin subunit B.;Transcript_evidence=AK102411 (DDBJ%2C Best hit);ORF_evidence=B6T814 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J033092P05;Expression=AK102411;TENOR=Os08t0442300-02;KEGG=Os08t0442300-02
Chr08	irgsp1_rep	five_prime_UTR	21551993	21552050	.	+	.	Parent=Os08t0442300-02
Chr08	irgsp1_rep	five_prime_UTR	21552177	21552253	.	+	.	Parent=Os08t0442300-02
Chr08	irgsp1_rep	CDS	21552254	21552323	.	+	0	Parent=Os08t0442300-02
Chr08	irgsp1_rep	CDS	21552448	21552572	.	+	2	Parent=Os08t0442300-02
Chr08	irgsp1_rep	CDS	21552714	21552810	.	+	0	Parent=Os08t0442300-02
Chr08	irgsp1_rep	CDS	21552901	21553010	.	+	2	Parent=Os08t0442300-02
Chr08	irgsp1_rep	CDS	21553543	21553617	.	+	0	Parent=Os08t0442300-02
Chr08	irgsp1_rep	CDS	21554066	21554116	.	+	0	Parent=Os08t0442300-02
Chr08	irgsp1_rep	three_prime_UTR	21554117	21554403	.	+	.	Parent=Os08t0442300-02
Chr08	irgsp1_rep	mRNA	21555138	21558585	.	+	.	ID=Os08t0442350-01;Name=Os08t0442350-01;Locus_id=Os08g0442350;Note=Hypothetical conserved gene.;Transcript_evidence=AK071128 (DDBJ%2C Best hit);ORF_evidence=NP_001175600.1 (RefSeq);InterPro=Protein of unknown function DUF593 (IPR007656);NIAS_FLcDNA=J023077A20;Expression=AK071128;TENOR=Os08t0442350-01;KEGG=Os08t0442350-01
Chr08	irgsp1_rep	five_prime_UTR	21555138	21555246	.	+	.	Parent=Os08t0442350-01
Chr08	irgsp1_rep	five_prime_UTR	21556427	21556497	.	+	.	Parent=Os08t0442350-01
Chr08	irgsp1_rep	CDS	21556498	21557970	.	+	0	Parent=Os08t0442350-01
Chr08	irgsp1_rep	CDS	21558054	21558077	.	+	0	Parent=Os08t0442350-01
Chr08	irgsp1_rep	three_prime_UTR	21558078	21558585	.	+	.	Parent=Os08t0442350-01
Chr08	irgsp1_rep	mRNA	21564093	21568488	.	+	.	ID=Os08t0442400-01;Name=Os08t0442400-01;Locus_id=Os08g0442400;CGSNL Gene Symbol=AP2/EREBP109;CGSNL Gene Name=APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 109;Oryzabase Gene Symbol Synonym(s)=AP2/EREBP#109;Oryzabase Gene Name Synonym(s)=APETALA2/ethylene-responsive element binding protein 109;Note=Similar to BABY BOOM.;Transcript_evidence=AK106769 (DDBJ%2C Best hit);ORF_evidence=B8BB42 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=002-115-F07;Oryzabase=10669;Expression=AK106769;TENOR=Os08t0442400-01;KEGG=Os08t0442400-01
Chr08	irgsp1_rep	five_prime_UTR	21564093	21564351	.	+	.	Parent=Os08t0442400-01
Chr08	irgsp1_rep	CDS	21564352	21564533	.	+	0	Parent=Os08t0442400-01
Chr08	irgsp1_rep	CDS	21564632	21564714	.	+	1	Parent=Os08t0442400-01
Chr08	irgsp1_rep	CDS	21564858	21564866	.	+	2	Parent=Os08t0442400-01
Chr08	irgsp1_rep	CDS	21564963	21565051	.	+	2	Parent=Os08t0442400-01
Chr08	irgsp1_rep	CDS	21565226	21565299	.	+	0	Parent=Os08t0442400-01
Chr08	irgsp1_rep	CDS	21565505	21565555	.	+	1	Parent=Os08t0442400-01
Chr08	irgsp1_rep	CDS	21565647	21565723	.	+	1	Parent=Os08t0442400-01
Chr08	irgsp1_rep	CDS	21567447	21568141	.	+	2	Parent=Os08t0442400-01
Chr08	irgsp1_rep	three_prime_UTR	21568142	21568488	.	+	.	Parent=Os08t0442400-01
Chr08	irgsp1_rep	mRNA	21577709	21579139	.	+	.	ID=Os08t0442600-01;Name=Os08t0442600-01;Locus_id=Os08g0442600;Note=Hypothetical protein.;Transcript_evidence=AK105576 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-128-D11;Expression=AK105576;TENOR=Os08t0442600-01;KEGG=Os08t0442600-01
Chr08	irgsp1_rep	five_prime_UTR	21577709	21578278	.	+	.	Parent=Os08t0442600-01
Chr08	irgsp1_rep	CDS	21578279	21578494	.	+	0	Parent=Os08t0442600-01
Chr08	irgsp1_rep	three_prime_UTR	21578495	21579139	.	+	.	Parent=Os08t0442600-01
Chr08	irgsp1_rep	mRNA	21578164	21583612	.	-	.	ID=Os08t0442700-01;Name=Os08t0442700-01;Locus_id=Os08g0442700;RAP-DB Gene Symbol Synonym(s)=COE1;RAP-DB Gene Name Synonym(s)=commissural vein excessive1;CGSNL Gene Symbol=COE1;CGSNL Gene Name=COMMISSURAL VEIN EXCESSIVE1;Oryzabase Gene Symbol Synonym(s)=coe1;Oryzabase Gene Name Synonym(s)=commissural vein excessive1;Note=Leucine-rich repeat receptor-like kinase%2C Regulation of commissural vein pattern formation;Transcript_evidence=AK111772;ORF_evidence=Q6Z8R5;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=Leucine-rich repeat domain superfamily (IPR032675),Protein kinase-like domain superfamily (IPR011009),Leucine-rich repeat-containing N-terminal%2C plant-type (IPR013210),Protein kinase domain (IPR000719),Leucine-rich repeat (IPR001611),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J023067P10;Manual Curation=December 22%2C 2017;Literature_PMID=20487383;Oryzabase=8788;Expression=AK111772;TENOR=Os08t0442700-01;KEGG=Os08t0442700-01;Subcellular location=plasma membrane (GO:0005886)
Chr08	irgsp1_rep	five_prime_UTR	21583489	21583612	.	-	.	Parent=Os08t0442700-01
Chr08	irgsp1_rep	CDS	21583398	21583488	.	-	0	Parent=Os08t0442700-01
Chr08	irgsp1_rep	CDS	21583169	21583301	.	-	2	Parent=Os08t0442700-01
Chr08	irgsp1_rep	CDS	21582943	21583014	.	-	1	Parent=Os08t0442700-01
Chr08	irgsp1_rep	CDS	21582640	21582783	.	-	1	Parent=Os08t0442700-01
Chr08	irgsp1_rep	CDS	21582447	21582518	.	-	1	Parent=Os08t0442700-01
Chr08	irgsp1_rep	CDS	21582271	21582330	.	-	1	Parent=Os08t0442700-01
Chr08	irgsp1_rep	CDS	21581950	21582086	.	-	1	Parent=Os08t0442700-01
Chr08	irgsp1_rep	CDS	21581636	21581821	.	-	2	Parent=Os08t0442700-01
Chr08	irgsp1_rep	CDS	21581184	21581552	.	-	2	Parent=Os08t0442700-01
Chr08	irgsp1_rep	CDS	21579605	21579996	.	-	2	Parent=Os08t0442700-01
Chr08	irgsp1_rep	CDS	21578673	21579053	.	-	0	Parent=Os08t0442700-01
Chr08	irgsp1_rep	three_prime_UTR	21578164	21578672	.	-	.	Parent=Os08t0442700-01
Chr08	irgsp1_rep	mRNA	21578028	21583519	.	-	.	ID=Os08t0442700-02;Name=Os08t0442700-02;Locus_id=Os08g0442700;CGSNL Gene Symbol=COE1;CGSNL Gene Name=COMMISSURAL VEIN EXCESSIVE1;Oryzabase Gene Symbol Synonym(s)=coe1;Oryzabase Gene Name Synonym(s)=commissural vein excessive1;Note=Similar to predicted protein.;Transcript_evidence=AK111984 (DDBJ%2C Best hit);ORF_evidence=C6ZRM9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-022-F05;Oryzabase=8788;Expression=AK111984;TENOR=Os08t0442700-02;KEGG=Os08t0442700-02 (EC:2.7.11.1)
Chr08	irgsp1_rep	five_prime_UTR	21583489	21583519	.	-	.	Parent=Os08t0442700-02
Chr08	irgsp1_rep	CDS	21583398	21583488	.	-	0	Parent=Os08t0442700-02
Chr08	irgsp1_rep	CDS	21583169	21583301	.	-	2	Parent=Os08t0442700-02
Chr08	irgsp1_rep	CDS	21582943	21583014	.	-	1	Parent=Os08t0442700-02
Chr08	irgsp1_rep	CDS	21582640	21582783	.	-	1	Parent=Os08t0442700-02
Chr08	irgsp1_rep	CDS	21582447	21582518	.	-	1	Parent=Os08t0442700-02
Chr08	irgsp1_rep	CDS	21582271	21582330	.	-	1	Parent=Os08t0442700-02
Chr08	irgsp1_rep	CDS	21581950	21582086	.	-	1	Parent=Os08t0442700-02
Chr08	irgsp1_rep	CDS	21579605	21579996	.	-	2	Parent=Os08t0442700-02
Chr08	irgsp1_rep	CDS	21578673	21579053	.	-	0	Parent=Os08t0442700-02
Chr08	irgsp1_rep	three_prime_UTR	21578028	21578672	.	-	.	Parent=Os08t0442700-02
Chr08	irgsp1_rep	mRNA	21591002	21592039	.	-	.	ID=Os08t0442900-01;Name=Os08t0442900-01;Locus_id=Os08g0442900;Note=Hypothetical protein.;Transcript_evidence=AK110520 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=002-167-H02;TENOR=Os08t0442900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	21591853	21592039	.	-	.	Parent=Os08t0442900-01
Chr08	irgsp1_rep	CDS	21591535	21591852	.	-	0	Parent=Os08t0442900-01
Chr08	irgsp1_rep	three_prime_UTR	21591002	21591534	.	-	.	Parent=Os08t0442900-01
Chr08	irgsp1_rep	mRNA	21612072	21612829	.	-	.	ID=Os08t0443600-00;Name=Os08t0443600-00;Locus_id=Os08g0443600;Note=Conserved hypothetical protein.;Transcript_evidence=EU971872 (DDBJ);ORF_evidence=A3BTL0 (UniProt);TENOR=Os08t0443600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	21612086	21612829	.	-	0	Parent=Os08t0443600-00
Chr08	irgsp1_rep	three_prime_UTR	21612072	21612085	.	-	.	Parent=Os08t0443600-00
Chr08	irgsp1_rep	mRNA	21627044	21628104	.	+	.	ID=Os08t0443800-01;Name=Os08t0443800-01;Locus_id=Os08g0443800;CGSNL Gene Symbol=TET12;CGSNL Gene Name=TETRASPANIN 12;Oryzabase Gene Symbol Synonym(s)=OsTET12;Oryzabase Gene Name Synonym(s)=tetraspanin 12;Note=Tetraspanin domain containing protein.;Transcript_evidence=AK110630 (DDBJ%2C Best hit);ORF_evidence=NP_001105285.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Tetraspanin (IPR018499),Tetraspanin%2C conserved site (IPR018503);NIAS_FLcDNA=002-169-B08;Oryzabase=20317;Expression=AK110630;TENOR=Os08t0443800-01;KEGG=Os08t0443800-01
Chr08	irgsp1_rep	five_prime_UTR	21627044	21627131	.	+	.	Parent=Os08t0443800-01
Chr08	irgsp1_rep	CDS	21627132	21627965	.	+	0	Parent=Os08t0443800-01
Chr08	irgsp1_rep	three_prime_UTR	21627966	21628104	.	+	.	Parent=Os08t0443800-01
Chr08	irgsp1_rep	mRNA	21632069	21636313	.	-	.	ID=Os08t0444100-01;Name=Os08t0444100-01;Locus_id=Os08g0444100;Note=Similar to Splicing factor 3b%2C subunit 5 (Splicing factor 3B subunit 10).;Transcript_evidence=AK073746 (DDBJ%2C Best hit);ORF_evidence=E5GC24 (UniProt);InterPro=Splicing factor 3B subunit 5/RDS3 complex subunit 10 (IPR009846),Splicing factor 3B%2C subunit 5 (IPR017089);NIAS_FLcDNA=J033068N16;Expression=AK073746;TENOR=Os08t0444100-01;KEGG=Os08t0444100-01
Chr08	irgsp1_rep	five_prime_UTR	21636076	21636313	.	-	.	Parent=Os08t0444100-01
Chr08	irgsp1_rep	five_prime_UTR	21635116	21635180	.	-	.	Parent=Os08t0444100-01
Chr08	irgsp1_rep	CDS	21635110	21635115	.	-	0	Parent=Os08t0444100-01
Chr08	irgsp1_rep	CDS	21634168	21634253	.	-	0	Parent=Os08t0444100-01
Chr08	irgsp1_rep	CDS	21633961	21634084	.	-	1	Parent=Os08t0444100-01
Chr08	irgsp1_rep	CDS	21632455	21632502	.	-	0	Parent=Os08t0444100-01
Chr08	irgsp1_rep	three_prime_UTR	21632069	21632454	.	-	.	Parent=Os08t0444100-01
Chr08	irgsp1_rep	mRNA	21644628	21646515	.	+	.	ID=Os08t0444440-01;Name=Os08t0444440-01;Locus_id=Os08g0444440;Note=Hypothetical conserved gene.;Transcript_evidence=AK241238 (DDBJ%2C Best hit);ORF_evidence=B9G163 (UniProt);NIAS_FLcDNA=J065128I05;TENOR=Os08t0444440-01;KEGG=Os08t0444440-01
Chr08	irgsp1_rep	five_prime_UTR	21644628	21644751	.	+	.	Parent=Os08t0444440-01
Chr08	irgsp1_rep	CDS	21644752	21644965	.	+	0	Parent=Os08t0444440-01
Chr08	irgsp1_rep	CDS	21646226	21646290	.	+	2	Parent=Os08t0444440-01
Chr08	irgsp1_rep	three_prime_UTR	21646291	21646515	.	+	.	Parent=Os08t0444440-01
Chr08	irgsp1_rep	mRNA	21653443	21654182	.	-	.	ID=Os08t0444500-00;Name=Os08t0444500-00;Locus_id=Os08g0444500;Note=Conserved hypothetical protein.;Transcript_evidence=CT835928 (DDBJ%2C Best hit);ORF_evidence=NP_001061923.1 (RefSeq);TENOR=Os08t0444500-00;KEGG=Os08t0444500-00
Chr08	irgsp1_rep	five_prime_UTR	21654097	21654182	.	-	.	Parent=Os08t0444500-00
Chr08	irgsp1_rep	CDS	21653815	21654096	.	-	0	Parent=Os08t0444500-00
Chr08	irgsp1_rep	three_prime_UTR	21653443	21653814	.	-	.	Parent=Os08t0444500-00
Chr08	irgsp1_rep	mRNA	21700257	21702424	.	+	.	ID=Os08t0445000-01;Name=Os08t0445000-01;Locus_id=Os08g0445000;Note=Similar to RING-H2 finger protein ATL5A.;Transcript_evidence=AK106866 (DDBJ%2C Best hit);ORF_evidence=B6T239 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=002-118-C12;Expression=AK106866;TENOR=Os08t0445000-01;KEGG=Os08t0445000-01
Chr08	irgsp1_rep	five_prime_UTR	21700257	21700588	.	+	.	Parent=Os08t0445000-01
Chr08	irgsp1_rep	CDS	21700589	21702094	.	+	0	Parent=Os08t0445000-01
Chr08	irgsp1_rep	three_prime_UTR	21702095	21702424	.	+	.	Parent=Os08t0445000-01
Chr08	irgsp1_rep	mRNA	21700708	21702079	.	-	.	ID=Os08t0445250-00;Name=Os08t0445250-00;Locus_id=Os08g0445250;Note=Hypothetical protein.;Transcript_evidence=tplb0042b14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0445250-00
Chr08	irgsp1_rep	five_prime_UTR	21701896	21702079	.	-	.	Parent=Os08t0445250-00
Chr08	irgsp1_rep	five_prime_UTR	21701345	21701811	.	-	.	Parent=Os08t0445250-00
Chr08	irgsp1_rep	CDS	21700745	21701344	.	-	0	Parent=Os08t0445250-00
Chr08	irgsp1_rep	three_prime_UTR	21700708	21700744	.	-	.	Parent=Os08t0445250-00
Chr08	irgsp1_rep	mRNA	21708986	21710196	.	+	.	ID=Os08t0445500-00;Name=Os08t0445500-00;Locus_id=Os08g0445500;Note=Similar to B0616E02-H0507E05.11 protein.;Transcript_evidence=BT056156 (DDBJ);ORF_evidence=Q01HW1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: NAD binding (GO:0051287);InterPro=D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain (IPR006139),NAD(P)-binding domain (IPR016040);TENOR=Os08t0445500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	21708986	21709399	.	+	0	Parent=Os08t0445500-00
Chr08	irgsp1_rep	three_prime_UTR	21709400	21709672	.	+	.	Parent=Os08t0445500-00
Chr08	irgsp1_rep	three_prime_UTR	21709961	21710196	.	+	.	Parent=Os08t0445500-00
Chr08	irgsp1_rep	mRNA	21722267	21726107	.	+	.	ID=Os08t0445700-01;Name=Os08t0445700-01;Locus_id=Os08g0445700;RAP-DB Gene Symbol Synonym(s)=OsTPS8;RAP-DB Gene Name Synonym(s)=Oryza sativa Trehalose-Phosphate-synthase 8;CGSNL Gene Symbol=TPS8;CGSNL Gene Name=TREHALOSE-6-PHOSPHATE SYNTHASE 8;Oryzabase Gene Symbol Synonym(s)=OsTPS8%2C OsTPS1%2C TPS1;Oryzabase Gene Name Synonym(s)=trehalose-6-phosphate synthase 1;Note=Class II trehalose-phosphate-synthase (TPS) gene family member%2C Salt stress tolerance%2C Control of yield-related traits;Transcript_evidence=AK072132;ORF_evidence=Q6ZCH3;GO=Biological Process: trehalose biosynthetic process (GO:0005992),Molecular Function: catalytic activity (GO:0003824);InterPro=HAD superfamily (IPR023214),HAD-like superfamily (IPR036412),HAD-superfamily hydrolase%2C subfamily IIB (IPR006379),Trehalose-phosphatase (IPR003337),Glycosyl transferase%2C family 20 (IPR001830);NIAS_FLcDNA=J013124K21;Manual Curation=October 11%2C 2018;Literature_PMID=30289560,21598083;Oryzabase=9047;Expression=AK072132;TENOR=Os08t0445700-01;KEGG=Os08t0445700-01;Subcellular location=plasma membrane (GO:0005886), cytoplasm (GO:0005737)
Chr08	irgsp1_rep	five_prime_UTR	21722267	21722317	.	+	.	Parent=Os08t0445700-01
Chr08	irgsp1_rep	CDS	21722318	21724203	.	+	0	Parent=Os08t0445700-01
Chr08	irgsp1_rep	CDS	21724782	21725055	.	+	1	Parent=Os08t0445700-01
Chr08	irgsp1_rep	CDS	21725506	21725820	.	+	0	Parent=Os08t0445700-01
Chr08	irgsp1_rep	three_prime_UTR	21725821	21726107	.	+	.	Parent=Os08t0445700-01
Chr08	irgsp1_rep	mRNA	21722267	21724491	.	+	.	ID=Os08t0445700-02;Name=Os08t0445700-02;Locus_id=Os08g0445700;CGSNL Gene Symbol=TPS8;CGSNL Gene Name=TREHALOSE-6-PHOSPHATE SYNTHASE 8;Oryzabase Gene Symbol Synonym(s)=OsTPS8%2C OsTPS1%2C TPS1;Oryzabase Gene Name Synonym(s)=trehalose-6-phosphate synthase 1;Note=Similar to Trehalose-6-phosphate synthase.;Transcript_evidence=AK109708 (DDBJ%2C Best hit);ORF_evidence=B6T0F0 (UniProt);GO=Biological Process: trehalose biosynthetic process (GO:0005992),Molecular Function: catalytic activity (GO:0003824);InterPro=Glycosyl transferase%2C family 20 (IPR001830),Trehalose-phosphatase (IPR003337),HAD-like domain (IPR023214);NIAS_FLcDNA=002-145-G09;Oryzabase=9047;TENOR=Os08t0445700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	21722267	21722317	.	+	.	Parent=Os08t0445700-02
Chr08	irgsp1_rep	CDS	21722318	21724207	.	+	0	Parent=Os08t0445700-02
Chr08	irgsp1_rep	three_prime_UTR	21724208	21724491	.	+	.	Parent=Os08t0445700-02
Chr08	irgsp1_rep	mRNA	21756526	21762118	.	-	.	ID=Os08t0446200-01;Name=Os08t0446200-01;Locus_id=Os08g0446200;CGSNL Gene Symbol=PEPR1;CGSNL Gene Name=PEP RECEPTOR 1;Oryzabase Gene Symbol Synonym(s)=OsPEPR1;Oryzabase Gene Name Synonym(s)=Pep receptor 1;Note=Similar to Receptor-like protein kinase precursor (EC 2.7.1.37). Splice isoform INRPK1a.;Transcript_evidence=AK120424 (DDBJ%2C Best hit);ORF_evidence=XP_002445581.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013095E07;Oryzabase=19674;Expression=AK120424;TENOR=Os08t0446200-01;KEGG=Os08t0446200-01 (EC:2.7.1.37)
Chr08	irgsp1_rep	five_prime_UTR	21762005	21762118	.	-	.	Parent=Os08t0446200-01
Chr08	irgsp1_rep	five_prime_UTR	21760609	21760615	.	-	.	Parent=Os08t0446200-01
Chr08	irgsp1_rep	CDS	21757650	21760608	.	-	0	Parent=Os08t0446200-01
Chr08	irgsp1_rep	CDS	21756840	21757219	.	-	2	Parent=Os08t0446200-01
Chr08	irgsp1_rep	three_prime_UTR	21756526	21756839	.	-	.	Parent=Os08t0446200-01
Chr08	irgsp1_rep	mRNA	21756902	21759256	.	+	.	ID=Os08t0446250-00;Name=Os08t0446250-00;Locus_id=Os08g0446250;Note=Hypothetical gene.;Transcript_evidence=BT068372 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0446250-00;KEGG=Os08t0446250-00
Chr08	irgsp1_rep	five_prime_UTR	21756902	21757234	.	+	.	Parent=Os08t0446250-00
Chr08	irgsp1_rep	five_prime_UTR	21757809	21757947	.	+	.	Parent=Os08t0446250-00
Chr08	irgsp1_rep	five_prime_UTR	21758067	21758560	.	+	.	Parent=Os08t0446250-00
Chr08	irgsp1_rep	CDS	21758561	21759097	.	+	0	Parent=Os08t0446250-00
Chr08	irgsp1_rep	three_prime_UTR	21759098	21759256	.	+	.	Parent=Os08t0446250-00
Chr08	irgsp1_rep	mRNA	21765470	21767613	.	-	.	ID=Os08t0446301-00;Name=Os08t0446301-00;Locus_id=Os08g0446301;Note=Similar to Isoform INRPK1c of Receptor-like protein kinase.;Transcript_evidence=CT835966 (DDBJ%2C Best hit);ORF_evidence=P93194-4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os08t0446301-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	21767602	21767613	.	-	.	Parent=Os08t0446301-00
Chr08	irgsp1_rep	CDS	21767496	21767601	.	-	0	Parent=Os08t0446301-00
Chr08	irgsp1_rep	CDS	21766424	21766797	.	-	2	Parent=Os08t0446301-00
Chr08	irgsp1_rep	three_prime_UTR	21766275	21766423	.	-	.	Parent=Os08t0446301-00
Chr08	irgsp1_rep	three_prime_UTR	21766057	21766133	.	-	.	Parent=Os08t0446301-00
Chr08	irgsp1_rep	three_prime_UTR	21765470	21765844	.	-	.	Parent=Os08t0446301-00
Chr08	irgsp1_rep	mRNA	21766479	21769092	.	+	.	ID=Os08t0446350-00;Name=Os08t0446350-00;Locus_id=Os08g0446350;Note=Non-protein coding transcript.;Transcript_evidence=BT068372 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0446350-00
Chr08	irgsp1_rep	exon	21766479	21766814	.	+	.	Parent=Os08t0446350-00
Chr08	irgsp1_rep	exon	21767653	21767800	.	+	.	Parent=Os08t0446350-00
Chr08	irgsp1_rep	exon	21767921	21769092	.	+	.	Parent=Os08t0446350-00
Chr08	irgsp1_rep	mRNA	21768923	21770635	.	-	.	ID=Os08t0446400-01;Name=Os08t0446400-01;Locus_id=Os08g0446400;CGSNL Gene Symbol=PEPR2;CGSNL Gene Name=PEP RECEPTOR 2;Oryzabase Gene Symbol Synonym(s)=OsPEPR2;Oryzabase Gene Name Synonym(s)=Pep receptor 2;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=AK102368 (DDBJ%2C Best hit);ORF_evidence=Q6ZAB5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J033091K12;Oryzabase=22464;TENOR=Os08t0446400-01
Chr08	irgsp1_rep	five_prime_UTR	21770446	21770635	.	-	.	Parent=Os08t0446400-01
Chr08	irgsp1_rep	five_prime_UTR	21770155	21770161	.	-	.	Parent=Os08t0446400-01
Chr08	irgsp1_rep	CDS	21768923	21770154	.	-	0	Parent=Os08t0446400-01
Chr08	irgsp1_rep	mRNA	21784165	21784687	.	-	.	ID=Os08t0446550-00;Name=Os08t0446550-00;Locus_id=Os08g0446550;Note=Glycosyltransferase AER61%2C uncharacterised domain containing protein.;Transcript_evidence=EU942988 (DDBJ);ORF_evidence=Q654V7 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyltransferase AER61%2C uncharacterised (IPR007657);TENOR=Os08t0446550-00
Chr08	irgsp1_rep	five_prime_UTR	21784486	21784687	.	-	.	Parent=Os08t0446550-00
Chr08	irgsp1_rep	CDS	21784165	21784485	.	-	0	Parent=Os08t0446550-00
Chr08	irgsp1_rep	mRNA	21797609	21799337	.	-	.	ID=Os08t0446700-00;Name=Os08t0446700-00;Locus_id=Os08g0446700;Note=Ribonuclease H-like domain containing protein.;Transcript_evidence=DQ115069 (DDBJ);ORF_evidence=GeneMark;GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Ribonuclease H-like (IPR012337);TENOR=Os08t0446700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	21798848	21799337	.	-	.	Parent=Os08t0446700-00
Chr08	irgsp1_rep	CDS	21798536	21798847	.	-	0	Parent=Os08t0446700-00
Chr08	irgsp1_rep	three_prime_UTR	21797609	21798535	.	-	.	Parent=Os08t0446700-00
Chr08	irgsp1_rep	mRNA	21805130	21805886	.	-	.	ID=Os08t0446750-00;Name=Os08t0446750-00;Locus_id=Os08g0446750;Note=Hypothetical protein.;Transcript_evidence=EU976033 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0446750-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	21805490	21805886	.	-	.	Parent=Os08t0446750-00
Chr08	irgsp1_rep	CDS	21805181	21805489	.	-	0	Parent=Os08t0446750-00
Chr08	irgsp1_rep	three_prime_UTR	21805130	21805180	.	-	.	Parent=Os08t0446750-00
Chr08	irgsp1_rep	mRNA	21805180	21806064	.	+	.	ID=Os08t0446800-01;Name=Os08t0446800-01;Locus_id=Os08g0446800;Note=Similar to GDU1.;Transcript_evidence=AK243202 (DDBJ%2C Best hit);ORF_evidence=NP_001151217.1 (RefSeq);NIAS_FLcDNA=J100040N04;TENOR=Os08t0446800-01;KEGG=Os08t0446800-01
Chr08	irgsp1_rep	five_prime_UTR	21805180	21805316	.	+	.	Parent=Os08t0446800-01
Chr08	irgsp1_rep	CDS	21805317	21805859	.	+	0	Parent=Os08t0446800-01
Chr08	irgsp1_rep	three_prime_UTR	21805860	21806064	.	+	.	Parent=Os08t0446800-01
Chr08	irgsp1_rep	mRNA	21818095	21823157	.	-	.	ID=Os08t0447000-01;Name=Os08t0447000-01;Locus_id=Os08g0447000;Note=Similar to D-3-phosphoglycerate dehydrogenase.;Transcript_evidence=AK243399 (DDBJ%2C Best hit);ORF_evidence=B6SKK1 (UniProt);GO=Biological Process: L-serine biosynthetic process (GO:0006564),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: phosphoglycerate dehydrogenase activity (GO:0004617),Molecular Function: amino acid binding (GO:0016597),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: cofactor binding (GO:0048037),Molecular Function: NAD binding (GO:0051287);InterPro=Amino acid-binding ACT (IPR002912),D-isomer specific 2-hydroxyacid dehydrogenase%2C catalytic domain (IPR006139),D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding (IPR006140),D-3-phosphoglycerate dehydrogenase (IPR006236),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J100064K13;TENOR=Os08t0447000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	21823081	21823157	.	-	.	Parent=Os08t0447000-01
Chr08	irgsp1_rep	CDS	21822477	21823080	.	-	0	Parent=Os08t0447000-01
Chr08	irgsp1_rep	CDS	21819608	21819984	.	-	2	Parent=Os08t0447000-01
Chr08	irgsp1_rep	CDS	21819398	21819508	.	-	0	Parent=Os08t0447000-01
Chr08	irgsp1_rep	CDS	21819201	21819296	.	-	0	Parent=Os08t0447000-01
Chr08	irgsp1_rep	CDS	21818397	21819074	.	-	0	Parent=Os08t0447000-01
Chr08	irgsp1_rep	three_prime_UTR	21818095	21818396	.	-	.	Parent=Os08t0447000-01
Chr08	irgsp1_rep	mRNA	21830830	21831540	.	+	.	ID=Os08t0447100-00;Name=Os08t0447100-00;Locus_id=Os08g0447100;Note=Conserved hypothetical protein.;Transcript_evidence=EU942576 (DDBJ);ORF_evidence=Q654U7 (UniProt);TENOR=Os08t0447100-00
Chr08	irgsp1_rep	CDS	21830830	21831540	.	+	0	Parent=Os08t0447100-00
Chr08	irgsp1_rep	mRNA	21835086	21840598	.	-	.	ID=Os08t0447200-01;Name=Os08t0447200-01;Locus_id=Os08g0447200;Note=SGT1 family protein.;Transcript_evidence=AK067377 (DDBJ%2C Best hit);ORF_evidence=Q949K3 (UniProt);InterPro=SGT1 (IPR010770);NIAS_FLcDNA=J013106M17;Expression=AK067377;TENOR=Os08t0447200-01;KEGG=Os08t0447200-01
Chr08	irgsp1_rep	five_prime_UTR	21840486	21840598	.	-	.	Parent=Os08t0447200-01
Chr08	irgsp1_rep	CDS	21839308	21840485	.	-	0	Parent=Os08t0447200-01
Chr08	irgsp1_rep	CDS	21838150	21838482	.	-	1	Parent=Os08t0447200-01
Chr08	irgsp1_rep	CDS	21837072	21837208	.	-	1	Parent=Os08t0447200-01
Chr08	irgsp1_rep	CDS	21836284	21836447	.	-	2	Parent=Os08t0447200-01
Chr08	irgsp1_rep	CDS	21835613	21835786	.	-	0	Parent=Os08t0447200-01
Chr08	irgsp1_rep	three_prime_UTR	21835086	21835612	.	-	.	Parent=Os08t0447200-01
Chr08	irgsp1_rep	mRNA	21842124	21846897	.	-	.	ID=Os08t0447300-00;Name=Os08t0447300-00;Locus_id=Os08g0447300;Note=Similar to serine esterase family protein.;Transcript_evidence=CU405828 (DDBJ%2C Best hit);ORF_evidence=NP_001148169.1 (RefSeq);InterPro=Domain of unknown function DUF676%2C lipase-like (IPR007751);TENOR=Os08t0447300-00;KEGG=Os08t0447300-00
Chr08	irgsp1_rep	five_prime_UTR	21846831	21846897	.	-	.	Parent=Os08t0447300-00
Chr08	irgsp1_rep	CDS	21846499	21846830	.	-	0	Parent=Os08t0447300-00
Chr08	irgsp1_rep	CDS	21846309	21846376	.	-	1	Parent=Os08t0447300-00
Chr08	irgsp1_rep	CDS	21845266	21845336	.	-	2	Parent=Os08t0447300-00
Chr08	irgsp1_rep	CDS	21844603	21844845	.	-	0	Parent=Os08t0447300-00
Chr08	irgsp1_rep	CDS	21843849	21844012	.	-	0	Parent=Os08t0447300-00
Chr08	irgsp1_rep	CDS	21843630	21843685	.	-	1	Parent=Os08t0447300-00
Chr08	irgsp1_rep	CDS	21843494	21843546	.	-	2	Parent=Os08t0447300-00
Chr08	irgsp1_rep	CDS	21843269	21843377	.	-	0	Parent=Os08t0447300-00
Chr08	irgsp1_rep	CDS	21843087	21843184	.	-	2	Parent=Os08t0447300-00
Chr08	irgsp1_rep	CDS	21842387	21842458	.	-	0	Parent=Os08t0447300-00
Chr08	irgsp1_rep	three_prime_UTR	21842124	21842386	.	-	.	Parent=Os08t0447300-00
Chr08	irgsp1_rep	mRNA	21851626	21854451	.	-	.	ID=Os08t0447500-01;Name=Os08t0447500-01;Locus_id=Os08g0447500;Note=Hypothetical conserved gene.;Transcript_evidence=AK240682 (DDBJ%2C Best hit);ORF_evidence=A3BTN1 (UniProt);NIAS_FLcDNA=J043001I01;TENOR=Os08t0447500-01;KEGG=Os08t0447500-01
Chr08	irgsp1_rep	CDS	21852668	21854451	.	-	0	Parent=Os08t0447500-01
Chr08	irgsp1_rep	CDS	21851988	21852192	.	-	1	Parent=Os08t0447500-01
Chr08	irgsp1_rep	three_prime_UTR	21851626	21851987	.	-	.	Parent=Os08t0447500-01
Chr08	irgsp1_rep	mRNA	21869307	21873106	.	+	.	ID=Os08t0447900-01;Name=Os08t0447900-01;Locus_id=Os08g0447900;Note=Similar to Adenylyl cyclase associated protein.;Transcript_evidence=AK071446 (DDBJ%2C Best hit);ORF_evidence=A2YVR2 (UniProt);GO=Biological Process: cell morphogenesis (GO:0000902),Biological Process: cytoskeleton organization (GO:0007010),Molecular Function: actin binding (GO:0003779),Molecular Function: binding (GO:0005488);InterPro=Adenylate cyclase-associated CAP (IPR001837),CARP motif (IPR006599),Adenylate cyclase-associated CAP%2C C-terminal (IPR013912),Adenylate cyclase-associated CAP%2C N-terminal (IPR013992),Cyclase-associated protein CAP/septum formation inhibitor MinC%2C C-terminal (IPR016098),C-CAP/cofactor C-like domain (IPR017901),CAP%2C conserved site (IPR018106);NIAS_FLcDNA=J023095E01;Expression=AK071446;TENOR=Os08t0447900-01;KEGG=Os08t0447900-01
Chr08	irgsp1_rep	five_prime_UTR	21869307	21869350	.	+	.	Parent=Os08t0447900-01
Chr08	irgsp1_rep	CDS	21869351	21869635	.	+	0	Parent=Os08t0447900-01
Chr08	irgsp1_rep	CDS	21869796	21869964	.	+	0	Parent=Os08t0447900-01
Chr08	irgsp1_rep	CDS	21870142	21870206	.	+	2	Parent=Os08t0447900-01
Chr08	irgsp1_rep	CDS	21870873	21871146	.	+	0	Parent=Os08t0447900-01
Chr08	irgsp1_rep	CDS	21871239	21871386	.	+	2	Parent=Os08t0447900-01
Chr08	irgsp1_rep	CDS	21871478	21871587	.	+	1	Parent=Os08t0447900-01
Chr08	irgsp1_rep	CDS	21871681	21871736	.	+	2	Parent=Os08t0447900-01
Chr08	irgsp1_rep	CDS	21871809	21871865	.	+	0	Parent=Os08t0447900-01
Chr08	irgsp1_rep	CDS	21871974	21872117	.	+	0	Parent=Os08t0447900-01
Chr08	irgsp1_rep	CDS	21872722	21872808	.	+	0	Parent=Os08t0447900-01
Chr08	irgsp1_rep	three_prime_UTR	21872809	21873106	.	+	.	Parent=Os08t0447900-01
Chr08	irgsp1_rep	mRNA	21873076	21875497	.	-	.	ID=Os08t0448000-01;Name=Os08t0448000-01;Locus_id=Os08g0448000;RAP-DB Gene Symbol Synonym(s)=4CL5%2C Os4CL5;RAP-DB Gene Name Synonym(s)=4-COUMARATE:COENZYME A LIGASE 5%2C 4-Coumarate:coenzyme A ligase 5;CGSNL Gene Symbol=4CL5;CGSNL Gene Name=4-COUMARATE:COENZYME A LIGASE 5;Oryzabase Gene Symbol Synonym(s)=Os4CL5%2C 4CL3%2C Os4CL3;Oryzabase Gene Name Synonym(s)=4-coumarate:coenzyme A ligase 5%2C 4-hydroxycinnamate CoA ligase 3;Note=4-coumarate:coenzyme A ligase%2C Lignin biosynthesis%2C Defense against wounding;Transcript_evidence=AK120964;ORF_evidence=Q6ZAC1;GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873),AMP-binding enzyme%2C C-terminal domain (IPR025110),AMP-binding%2C conserved site (IPR020845);NIAS_FLcDNA=J023040C04;Manual Curation=May 26%2C 2017;Literature_PMID=23246835,21807887;Oryzabase=9684;Expression=AK120964;TENOR=Os08t0448000-01;KEGG=Os08t0448000-01 (EC:6.2.1.12)
Chr08	irgsp1_rep	five_prime_UTR	21875393	21875497	.	-	.	Parent=Os08t0448000-01
Chr08	irgsp1_rep	CDS	21874412	21875392	.	-	0	Parent=Os08t0448000-01
Chr08	irgsp1_rep	CDS	21874118	21874316	.	-	0	Parent=Os08t0448000-01
Chr08	irgsp1_rep	CDS	21873772	21873985	.	-	2	Parent=Os08t0448000-01
Chr08	irgsp1_rep	CDS	21873552	21873654	.	-	1	Parent=Os08t0448000-01
Chr08	irgsp1_rep	CDS	21873329	21873451	.	-	0	Parent=Os08t0448000-01
Chr08	irgsp1_rep	three_prime_UTR	21873076	21873328	.	-	.	Parent=Os08t0448000-01
Chr08	irgsp1_rep	mRNA	21874409	21875409	.	+	.	ID=Os08t0448050-00;Name=Os08t0448050-00;Locus_id=Os08g0448050;Note=Hypothetical protein.;Transcript_evidence=BT062457 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0448050-00
Chr08	irgsp1_rep	CDS	21874409	21875107	.	+	0	Parent=Os08t0448050-00
Chr08	irgsp1_rep	three_prime_UTR	21875108	21875409	.	+	.	Parent=Os08t0448050-00
Chr08	irgsp1_rep	mRNA	21884313	21885260	.	+	.	ID=Os08t0448100-01;Name=Os08t0448100-01;Locus_id=Os08g0448100;Note=Conserved hypothetical protein.;Transcript_evidence=AK108891 (DDBJ%2C Best hit);ORF_evidence=A2YVR4 (UniProt);NIAS_FLcDNA=002-152-E05;Expression=AK108891;TENOR=Os08t0448100-01;KEGG=Os08t0448100-01
Chr08	irgsp1_rep	five_prime_UTR	21884313	21884527	.	+	.	Parent=Os08t0448100-01
Chr08	irgsp1_rep	CDS	21884528	21885022	.	+	0	Parent=Os08t0448100-01
Chr08	irgsp1_rep	three_prime_UTR	21885023	21885260	.	+	.	Parent=Os08t0448100-01
Chr08	irgsp1_rep	mRNA	21921124	21921598	.	-	.	ID=Os08t0448900-00;Name=Os08t0448900-00;Locus_id=Os08g0448900;Note=Conserved hypothetical protein.;Transcript_evidence=CT832739 (DDBJ%2C Best hit);ORF_evidence=NP_001175602.1 (RefSeq);TENOR=Os08t0448900-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	21921478	21921598	.	-	.	Parent=Os08t0448900-00
Chr08	irgsp1_rep	CDS	21921349	21921477	.	-	0	Parent=Os08t0448900-00
Chr08	irgsp1_rep	three_prime_UTR	21921124	21921348	.	-	.	Parent=Os08t0448900-00
Chr08	irgsp1_rep	mRNA	21943743	21946408	.	-	.	ID=Os08t0449200-01;Name=Os08t0449200-01;Locus_id=Os08g0449200;Note=Hypothetical conserved gene.;Transcript_evidence=AK063038 (DDBJ%2C Best hit);ORF_evidence=A2XJ44 (UniProt);NIAS_FLcDNA=001-110-D02;TENOR=Os08t0449200-01
Chr08	irgsp1_rep	five_prime_UTR	21946311	21946408	.	-	.	Parent=Os08t0449200-01
Chr08	irgsp1_rep	five_prime_UTR	21944469	21944489	.	-	.	Parent=Os08t0449200-01
Chr08	irgsp1_rep	CDS	21944425	21944468	.	-	0	Parent=Os08t0449200-01
Chr08	irgsp1_rep	CDS	21944270	21944327	.	-	1	Parent=Os08t0449200-01
Chr08	irgsp1_rep	CDS	21943743	21943984	.	-	0	Parent=Os08t0449200-01
Chr08	irgsp1_rep	mRNA	21954392	21955522	.	-	.	ID=Os08t0449500-01;Name=Os08t0449500-01;Locus_id=Os08g0449500;Note=Conserved hypothetical protein.;Transcript_evidence=AK120389 (DDBJ%2C Best hit);ORF_evidence=B8BB90 (UniProt);NIAS_FLcDNA=J013073P03;Expression=AK120389;TENOR=Os08t0449500-01;KEGG=Os08t0449500-01
Chr08	irgsp1_rep	five_prime_UTR	21955291	21955522	.	-	.	Parent=Os08t0449500-01
Chr08	irgsp1_rep	CDS	21955109	21955290	.	-	0	Parent=Os08t0449500-01
Chr08	irgsp1_rep	CDS	21954967	21955003	.	-	1	Parent=Os08t0449500-01
Chr08	irgsp1_rep	three_prime_UTR	21954786	21954966	.	-	.	Parent=Os08t0449500-01
Chr08	irgsp1_rep	three_prime_UTR	21954392	21954599	.	-	.	Parent=Os08t0449500-01
Chr08	irgsp1_rep	mRNA	21951752	21955491	.	-	.	ID=Os08t0449500-02;Name=Os08t0449500-02;Locus_id=Os08g0449500;Note=Conserved hypothetical protein.;Transcript_evidence=AK061310 (DDBJ%2C Best hit);ORF_evidence=B8BB90 (UniProt);NIAS_FLcDNA=006-302-A12;Expression=AK061310;TENOR=Os08t0449500-02;KEGG=Os08t0449500-02
Chr08	irgsp1_rep	five_prime_UTR	21955291	21955491	.	-	.	Parent=Os08t0449500-02
Chr08	irgsp1_rep	CDS	21955109	21955290	.	-	0	Parent=Os08t0449500-02
Chr08	irgsp1_rep	CDS	21954967	21955003	.	-	1	Parent=Os08t0449500-02
Chr08	irgsp1_rep	three_prime_UTR	21954786	21954966	.	-	.	Parent=Os08t0449500-02
Chr08	irgsp1_rep	three_prime_UTR	21954468	21954599	.	-	.	Parent=Os08t0449500-02
Chr08	irgsp1_rep	three_prime_UTR	21954204	21954376	.	-	.	Parent=Os08t0449500-02
Chr08	irgsp1_rep	three_prime_UTR	21952766	21952826	.	-	.	Parent=Os08t0449500-02
Chr08	irgsp1_rep	three_prime_UTR	21951752	21951897	.	-	.	Parent=Os08t0449500-02
Chr08	irgsp1_rep	mRNA	21978437	21980984	.	-	.	ID=Os08t0449901-00;Name=Os08t0449901-00;Locus_id=Os08g0449901;Note=Hypothetical protein.;Transcript_evidence=BT085732 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0449901-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	21980663	21980984	.	-	.	Parent=Os08t0449901-00
Chr08	irgsp1_rep	CDS	21980611	21980662	.	-	0	Parent=Os08t0449901-00
Chr08	irgsp1_rep	CDS	21978437	21979054	.	-	2	Parent=Os08t0449901-00
Chr08	irgsp1_rep	mRNA	21978068	21981556	.	+	.	ID=Os08t0450100-01;Name=Os08t0450100-01;Locus_id=Os08g0450100;CGSNL Gene Symbol=PME25;CGSNL Gene Name=PECTIN METHYLESTERASE 25;Oryzabase Gene Symbol Synonym(s)=OsPME25;Oryzabase Gene Name Synonym(s)=pectin methylesterase 25;Note=Similar to Pectinesterase (EC 3.1.1.11) (Fragment).;Transcript_evidence=AK058651 (DDBJ%2C Best hit);ORF_evidence=A2YVS3 (UniProt);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectinesterase inhibitor (IPR006501),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),Pectinesterase%2C active site (IPR018040);NIAS_FLcDNA=001-018-F02;Oryzabase=13189;Expression=AK058651;TENOR=Os08t0450100-01;KEGG=Os08t0450100-01 (EC:3.1.1.11)
Chr08	irgsp1_rep	five_prime_UTR	21978068	21978128	.	+	.	Parent=Os08t0450100-01
Chr08	irgsp1_rep	CDS	21978129	21979074	.	+	0	Parent=Os08t0450100-01
Chr08	irgsp1_rep	CDS	21980641	21981368	.	+	2	Parent=Os08t0450100-01
Chr08	irgsp1_rep	three_prime_UTR	21981369	21981556	.	+	.	Parent=Os08t0450100-01
Chr08	irgsp1_rep	mRNA	21981611	21984054	.	-	.	ID=Os08t0450200-01;Name=Os08t0450200-01;Locus_id=Os08g0450200;CGSNL Gene Symbol=PME26;CGSNL Gene Name=PECTIN METHYLESTERASE 26;Oryzabase Gene Symbol Synonym(s)=OsPME26;Oryzabase Gene Name Synonym(s)=pectin methylesterase 26;Note=Similar to Pectin methylesterase (Fragment).;Transcript_evidence=AK072779 (DDBJ%2C Best hit);ORF_evidence=A2YVS4 (UniProt);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectinesterase inhibitor (IPR006501),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),Pectinesterase%2C active site (IPR018040);NIAS_FLcDNA=J023141O18;Oryzabase=13190;Expression=AK072779;TENOR=Os08t0450200-01;KEGG=Os08t0450200-01
Chr08	irgsp1_rep	five_prime_UTR	21983937	21984054	.	-	.	Parent=Os08t0450200-01
Chr08	irgsp1_rep	CDS	21982804	21983936	.	-	0	Parent=Os08t0450200-01
Chr08	irgsp1_rep	CDS	21982548	21982708	.	-	1	Parent=Os08t0450200-01
Chr08	irgsp1_rep	CDS	21981765	21982465	.	-	2	Parent=Os08t0450200-01
Chr08	irgsp1_rep	three_prime_UTR	21981611	21981764	.	-	.	Parent=Os08t0450200-01
Chr08	irgsp1_rep	mRNA	22003703	22006379	.	+	.	ID=Os08t0450700-01;Name=Os08t0450700-01;Locus_id=Os08g0450700;Note=Chaperonin Cpn60/TCP-1 family protein.;Transcript_evidence=AK099642 (DDBJ%2C Best hit);ORF_evidence=NP_188044.1 (RefSeq);GO=Biological Process: cellular protein metabolic process (GO:0044267),Molecular Function: ATP binding (GO:0005524);InterPro=Chaperonin Cpn60/TCP-1 (IPR002423);NIAS_FLcDNA=J013060L05;Oryzabase=23564;Expression=AK099642;TENOR=Os08t0450700-01;KEGG=Os08t0450700-01
Chr08	irgsp1_rep	CDS	22003703	22004199	.	+	0	Parent=Os08t0450700-01
Chr08	irgsp1_rep	CDS	22004462	22004615	.	+	1	Parent=Os08t0450700-01
Chr08	irgsp1_rep	CDS	22004735	22005079	.	+	0	Parent=Os08t0450700-01
Chr08	irgsp1_rep	CDS	22005564	22006379	.	+	0	Parent=Os08t0450700-01
Chr08	irgsp1_rep	mRNA	22006770	22011814	.	+	.	ID=Os08t0450800-01;Name=Os08t0450800-01;Locus_id=Os08g0450800;Note=Phosphatidylinositol-4-phosphate 5-kinase family protein.;Transcript_evidence=AK102479 (DDBJ%2C Best hit);ORF_evidence=XP_002882874.1 (RefSeq);GO=Biological Process: phosphatidylinositol metabolic process (GO:0046488),Molecular Function: phosphatidylinositol phosphate kinase activity (GO:0016307);InterPro=Phosphatidylinositol-4-phosphate 5-kinase%2C core (IPR002498),Phosphatidylinositol-4-phosphate 5-kinase (IPR023610);NIAS_FLcDNA=J033094J24;Oryzabase=23564;Expression=AK102479;TENOR=Os08t0450800-01;KEGG=Os08t0450800-01
Chr08	irgsp1_rep	five_prime_UTR	22006770	22006771	.	+	.	Parent=Os08t0450800-01
Chr08	irgsp1_rep	CDS	22006772	22006881	.	+	0	Parent=Os08t0450800-01
Chr08	irgsp1_rep	CDS	22006950	22007073	.	+	1	Parent=Os08t0450800-01
Chr08	irgsp1_rep	CDS	22007142	22007312	.	+	0	Parent=Os08t0450800-01
Chr08	irgsp1_rep	CDS	22007429	22008889	.	+	0	Parent=Os08t0450800-01
Chr08	irgsp1_rep	CDS	22009888	22010151	.	+	0	Parent=Os08t0450800-01
Chr08	irgsp1_rep	CDS	22011107	22011430	.	+	0	Parent=Os08t0450800-01
Chr08	irgsp1_rep	three_prime_UTR	22011431	22011814	.	+	.	Parent=Os08t0450800-01
Chr08	irgsp1_rep	mRNA	22007824	22011866	.	+	.	ID=Os08t0450800-02;Name=Os08t0450800-02;Locus_id=Os08g0450800;Note=Similar to predicted protein.;Transcript_evidence=AK073924 (DDBJ%2C Best hit);ORF_evidence=NP_001078484.4 (RefSeq);GO=Biological Process: phosphatidylinositol metabolic process (GO:0046488),Molecular Function: phosphatidylinositol phosphate kinase activity (GO:0016307);InterPro=Phosphatidylinositol-4-phosphate 5-kinase%2C core (IPR002498),Phosphatidylinositol-4-phosphate 5-kinase%2C core%2C subgroup (IPR016034),Phosphatidylinositol-4-phosphate 5-kinase (IPR023610);NIAS_FLcDNA=J033074N18;Oryzabase=23564;Expression=AK073924;TENOR=Os08t0450800-02;KEGG=Os08t0450800-02
Chr08	irgsp1_rep	five_prime_UTR	22007824	22007824	.	+	.	Parent=Os08t0450800-02
Chr08	irgsp1_rep	CDS	22007825	22008889	.	+	0	Parent=Os08t0450800-02
Chr08	irgsp1_rep	CDS	22009888	22010151	.	+	0	Parent=Os08t0450800-02
Chr08	irgsp1_rep	CDS	22011107	22011430	.	+	0	Parent=Os08t0450800-02
Chr08	irgsp1_rep	three_prime_UTR	22011431	22011866	.	+	.	Parent=Os08t0450800-02
Chr08	irgsp1_rep	mRNA	22012617	22013219	.	+	.	ID=Os08t0450900-00;Name=Os08t0450900-00;Locus_id=Os08g0450900;Note=SANT domain%2C DNA binding domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6ZLF1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);TENOR=Os08t0450900-00
Chr08	irgsp1_rep	CDS	22012617	22013219	.	+	0	Parent=Os08t0450900-00
Chr08	irgsp1_rep	mRNA	22013819	22024438	.	+	.	ID=Os08t0451000-01;Name=Os08t0451000-01;Locus_id=Os08g0451000;Note=Sec34-like protein family protein.;Transcript_evidence=AK067199 (DDBJ%2C Best hit);ORF_evidence=NP_001117595.1 (RefSeq);GO=Biological Process: intracellular protein transport (GO:0006886),Cellular Component: cis-Golgi network (GO:0005801),Cellular Component: membrane (GO:0016020);InterPro=Conserved oligomeric Golgi complex%2C subunit 3 (IPR007265);NIAS_FLcDNA=J013097F22;Expression=AK067199;TENOR=Os08t0451000-01;KEGG=Os08t0451000-01
Chr08	irgsp1_rep	five_prime_UTR	22013819	22014062	.	+	.	Parent=Os08t0451000-01
Chr08	irgsp1_rep	CDS	22014063	22014140	.	+	0	Parent=Os08t0451000-01
Chr08	irgsp1_rep	CDS	22014238	22014321	.	+	0	Parent=Os08t0451000-01
Chr08	irgsp1_rep	CDS	22014862	22014960	.	+	0	Parent=Os08t0451000-01
Chr08	irgsp1_rep	CDS	22015105	22015149	.	+	0	Parent=Os08t0451000-01
Chr08	irgsp1_rep	CDS	22015231	22015305	.	+	0	Parent=Os08t0451000-01
Chr08	irgsp1_rep	CDS	22015411	22015506	.	+	0	Parent=Os08t0451000-01
Chr08	irgsp1_rep	CDS	22016391	22016468	.	+	0	Parent=Os08t0451000-01
Chr08	irgsp1_rep	CDS	22017105	22017190	.	+	0	Parent=Os08t0451000-01
Chr08	irgsp1_rep	CDS	22017279	22017345	.	+	1	Parent=Os08t0451000-01
Chr08	irgsp1_rep	CDS	22017433	22017495	.	+	0	Parent=Os08t0451000-01
Chr08	irgsp1_rep	CDS	22017573	22017674	.	+	0	Parent=Os08t0451000-01
Chr08	irgsp1_rep	CDS	22017800	22017904	.	+	0	Parent=Os08t0451000-01
Chr08	irgsp1_rep	CDS	22017989	22018081	.	+	0	Parent=Os08t0451000-01
Chr08	irgsp1_rep	CDS	22018621	22018709	.	+	0	Parent=Os08t0451000-01
Chr08	irgsp1_rep	CDS	22019290	22019509	.	+	1	Parent=Os08t0451000-01
Chr08	irgsp1_rep	CDS	22020057	22020140	.	+	0	Parent=Os08t0451000-01
Chr08	irgsp1_rep	CDS	22020462	22020578	.	+	0	Parent=Os08t0451000-01
Chr08	irgsp1_rep	CDS	22020682	22020714	.	+	0	Parent=Os08t0451000-01
Chr08	irgsp1_rep	CDS	22020830	22020916	.	+	0	Parent=Os08t0451000-01
Chr08	irgsp1_rep	CDS	22021007	22021069	.	+	0	Parent=Os08t0451000-01
Chr08	irgsp1_rep	CDS	22022074	22022190	.	+	0	Parent=Os08t0451000-01
Chr08	irgsp1_rep	CDS	22022472	22022564	.	+	0	Parent=Os08t0451000-01
Chr08	irgsp1_rep	CDS	22023035	22023160	.	+	0	Parent=Os08t0451000-01
Chr08	irgsp1_rep	CDS	22023233	22023333	.	+	0	Parent=Os08t0451000-01
Chr08	irgsp1_rep	CDS	22024158	22024287	.	+	1	Parent=Os08t0451000-01
Chr08	irgsp1_rep	three_prime_UTR	22024288	22024438	.	+	.	Parent=Os08t0451000-01
Chr08	irgsp1_rep	mRNA	22034101	22035214	.	+	.	ID=Os08t0451200-01;Name=Os08t0451200-01;Locus_id=Os08g0451200;Note=Protein of unknown function DUF581 family protein.;Transcript_evidence=AK242350 (DDBJ%2C Best hit);ORF_evidence=B9G176 (UniProt);InterPro=Protein of unknown function DUF581 (IPR007650);NIAS_FLcDNA=J080014E10;TENOR=Os08t0451200-01;KEGG=Os08t0451200-01
Chr08	irgsp1_rep	five_prime_UTR	22034101	22034219	.	+	.	Parent=Os08t0451200-01
Chr08	irgsp1_rep	CDS	22034220	22034608	.	+	0	Parent=Os08t0451200-01
Chr08	irgsp1_rep	CDS	22034822	22035008	.	+	1	Parent=Os08t0451200-01
Chr08	irgsp1_rep	three_prime_UTR	22035009	22035214	.	+	.	Parent=Os08t0451200-01
Chr08	irgsp1_rep	mRNA	22034045	22034956	.	-	.	ID=Os08t0451201-00;Name=Os08t0451201-00;Locus_id=Os08g0451201;Note=Conserved hypothetical protein.;Transcript_evidence=EU952867 (DDBJ);ORF_evidence=NP_001175604.1 (RefSeq);TENOR=Os08t0451201-00;KEGG=Os08t0451201-00
Chr08	irgsp1_rep	five_prime_UTR	22034795	22034956	.	-	.	Parent=Os08t0451201-00
Chr08	irgsp1_rep	five_prime_UTR	22034673	22034690	.	-	.	Parent=Os08t0451201-00
Chr08	irgsp1_rep	CDS	22034178	22034672	.	-	0	Parent=Os08t0451201-00
Chr08	irgsp1_rep	three_prime_UTR	22034045	22034177	.	-	.	Parent=Os08t0451201-00
Chr08	irgsp1_rep	mRNA	22038935	22048676	.	-	.	ID=Os08t0451400-01;Name=Os08t0451400-01;Locus_id=Os08g0451400;Oryzabase Gene Symbol Synonym(s)=OsARID4%2C ARID4;Oryzabase Gene Name Synonym(s)=AT-rich Interaction Domain-containing protein 4;Note=AT-rich interaction region domain containing protein.;Transcript_evidence=AK066110 (DDBJ%2C Best hit);ORF_evidence=XP_002877271.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=ARID/BRIGHT DNA-binding domain (IPR001606),Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J013050J22;Oryzabase=19994;Expression=AK066110;TENOR=Os08t0451400-01;KEGG=Os08t0451400-01
Chr08	irgsp1_rep	five_prime_UTR	22048444	22048676	.	-	.	Parent=Os08t0451400-01
Chr08	irgsp1_rep	five_prime_UTR	22048228	22048349	.	-	.	Parent=Os08t0451400-01
Chr08	irgsp1_rep	five_prime_UTR	22046471	22046524	.	-	.	Parent=Os08t0451400-01
Chr08	irgsp1_rep	CDS	22046306	22046470	.	-	0	Parent=Os08t0451400-01
Chr08	irgsp1_rep	CDS	22046042	22046233	.	-	0	Parent=Os08t0451400-01
Chr08	irgsp1_rep	CDS	22045012	22045065	.	-	0	Parent=Os08t0451400-01
Chr08	irgsp1_rep	CDS	22044457	22044545	.	-	0	Parent=Os08t0451400-01
Chr08	irgsp1_rep	CDS	22044114	22044366	.	-	1	Parent=Os08t0451400-01
Chr08	irgsp1_rep	CDS	22043964	22044020	.	-	0	Parent=Os08t0451400-01
Chr08	irgsp1_rep	CDS	22042935	22042966	.	-	0	Parent=Os08t0451400-01
Chr08	irgsp1_rep	CDS	22042396	22042531	.	-	1	Parent=Os08t0451400-01
Chr08	irgsp1_rep	CDS	22042138	22042311	.	-	0	Parent=Os08t0451400-01
Chr08	irgsp1_rep	CDS	22041094	22041669	.	-	0	Parent=Os08t0451400-01
Chr08	irgsp1_rep	CDS	22040857	22040994	.	-	0	Parent=Os08t0451400-01
Chr08	irgsp1_rep	CDS	22040634	22040732	.	-	0	Parent=Os08t0451400-01
Chr08	irgsp1_rep	CDS	22039530	22039630	.	-	0	Parent=Os08t0451400-01
Chr08	irgsp1_rep	CDS	22039355	22039445	.	-	1	Parent=Os08t0451400-01
Chr08	irgsp1_rep	CDS	22039130	22039258	.	-	0	Parent=Os08t0451400-01
Chr08	irgsp1_rep	three_prime_UTR	22038935	22039129	.	-	.	Parent=Os08t0451400-01
Chr08	irgsp1_rep	mRNA	22041477	22048555	.	-	.	ID=Os08t0451400-02;Name=Os08t0451400-02;Locus_id=Os08g0451400;Oryzabase Gene Symbol Synonym(s)=OsARID4%2C ARID4;Oryzabase Gene Name Synonym(s)=AT-rich Interaction Domain-containing protein 4;Note=Hypothetical conserved gene.;Transcript_evidence=AK070728 (DDBJ%2C Best hit);ORF_evidence=B8BB96 (UniProt);NIAS_FLcDNA=J023058P14;Oryzabase=19994;TENOR=Os08t0451400-02
Chr08	irgsp1_rep	five_prime_UTR	22048444	22048555	.	-	.	Parent=Os08t0451400-02
Chr08	irgsp1_rep	five_prime_UTR	22048228	22048349	.	-	.	Parent=Os08t0451400-02
Chr08	irgsp1_rep	five_prime_UTR	22046471	22046535	.	-	.	Parent=Os08t0451400-02
Chr08	irgsp1_rep	CDS	22046306	22046470	.	-	0	Parent=Os08t0451400-02
Chr08	irgsp1_rep	CDS	22046042	22046233	.	-	0	Parent=Os08t0451400-02
Chr08	irgsp1_rep	CDS	22045012	22045065	.	-	0	Parent=Os08t0451400-02
Chr08	irgsp1_rep	CDS	22044457	22044545	.	-	0	Parent=Os08t0451400-02
Chr08	irgsp1_rep	CDS	22044114	22044366	.	-	1	Parent=Os08t0451400-02
Chr08	irgsp1_rep	CDS	22043964	22044020	.	-	0	Parent=Os08t0451400-02
Chr08	irgsp1_rep	CDS	22042935	22042966	.	-	0	Parent=Os08t0451400-02
Chr08	irgsp1_rep	CDS	22042396	22042531	.	-	1	Parent=Os08t0451400-02
Chr08	irgsp1_rep	CDS	22042138	22042311	.	-	0	Parent=Os08t0451400-02
Chr08	irgsp1_rep	CDS	22041477	22041669	.	-	0	Parent=Os08t0451400-02
Chr08	irgsp1_rep	mRNA	22038934	22045062	.	-	.	ID=Os08t0451400-03;Name=Os08t0451400-03;Locus_id=Os08g0451400;Oryzabase Gene Symbol Synonym(s)=OsARID4%2C ARID4;Oryzabase Gene Name Synonym(s)=AT-rich Interaction Domain-containing protein 4;Note=Similar to ARID/BRIGHT DNA-binding domain-containing protein.;Transcript_evidence=AK060745 (DDBJ%2C Best hit);ORF_evidence=XP_002877271.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: DNA binding (GO:0003677);InterPro=ARID/BRIGHT DNA-binding domain (IPR001606),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=001-032-E10;Oryzabase=19994;TENOR=Os08t0451400-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	22045012	22045062	.	-	.	Parent=Os08t0451400-03
Chr08	irgsp1_rep	five_prime_UTR	22044457	22044545	.	-	.	Parent=Os08t0451400-03
Chr08	irgsp1_rep	five_prime_UTR	22044216	22044366	.	-	.	Parent=Os08t0451400-03
Chr08	irgsp1_rep	CDS	22044114	22044215	.	-	0	Parent=Os08t0451400-03
Chr08	irgsp1_rep	CDS	22043964	22044020	.	-	0	Parent=Os08t0451400-03
Chr08	irgsp1_rep	CDS	22042935	22042966	.	-	0	Parent=Os08t0451400-03
Chr08	irgsp1_rep	CDS	22042396	22042531	.	-	1	Parent=Os08t0451400-03
Chr08	irgsp1_rep	CDS	22042138	22042311	.	-	0	Parent=Os08t0451400-03
Chr08	irgsp1_rep	CDS	22041094	22041669	.	-	0	Parent=Os08t0451400-03
Chr08	irgsp1_rep	CDS	22040857	22040994	.	-	0	Parent=Os08t0451400-03
Chr08	irgsp1_rep	CDS	22040634	22040732	.	-	0	Parent=Os08t0451400-03
Chr08	irgsp1_rep	CDS	22039530	22039630	.	-	0	Parent=Os08t0451400-03
Chr08	irgsp1_rep	CDS	22039355	22039445	.	-	1	Parent=Os08t0451400-03
Chr08	irgsp1_rep	CDS	22039130	22039258	.	-	0	Parent=Os08t0451400-03
Chr08	irgsp1_rep	three_prime_UTR	22038934	22039129	.	-	.	Parent=Os08t0451400-03
Chr08	irgsp1_rep	mRNA	22054033	22067025	.	-	.	ID=Os08t0451500-01;Name=Os08t0451500-01;Locus_id=Os08g0451500;Note=Conserved hypothetical protein.;Transcript_evidence=AK288003 (DDBJ%2C Best hit);ORF_evidence=B8BA27 (UniProt);NIAS_FLcDNA=J075110D07;TENOR=Os08t0451500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	22066724	22067025	.	-	.	Parent=Os08t0451500-01
Chr08	irgsp1_rep	five_prime_UTR	22066435	22066606	.	-	.	Parent=Os08t0451500-01
Chr08	irgsp1_rep	CDS	22066416	22066434	.	-	0	Parent=Os08t0451500-01
Chr08	irgsp1_rep	CDS	22066080	22066291	.	-	2	Parent=Os08t0451500-01
Chr08	irgsp1_rep	CDS	22058500	22058691	.	-	0	Parent=Os08t0451500-01
Chr08	irgsp1_rep	CDS	22057476	22057529	.	-	0	Parent=Os08t0451500-01
Chr08	irgsp1_rep	CDS	22056938	22056961	.	-	0	Parent=Os08t0451500-01
Chr08	irgsp1_rep	three_prime_UTR	22056922	22056937	.	-	.	Parent=Os08t0451500-01
Chr08	irgsp1_rep	three_prime_UTR	22056575	22056831	.	-	.	Parent=Os08t0451500-01
Chr08	irgsp1_rep	three_prime_UTR	22056429	22056485	.	-	.	Parent=Os08t0451500-01
Chr08	irgsp1_rep	three_prime_UTR	22055664	22055695	.	-	.	Parent=Os08t0451500-01
Chr08	irgsp1_rep	three_prime_UTR	22055082	22055217	.	-	.	Parent=Os08t0451500-01
Chr08	irgsp1_rep	three_prime_UTR	22054833	22055006	.	-	.	Parent=Os08t0451500-01
Chr08	irgsp1_rep	three_prime_UTR	22054445	22054682	.	-	.	Parent=Os08t0451500-01
Chr08	irgsp1_rep	three_prime_UTR	22054033	22054359	.	-	.	Parent=Os08t0451500-01
Chr08	irgsp1_rep	mRNA	22084917	22093757	.	-	.	ID=Os08t0451700-01;Name=Os08t0451700-01;Locus_id=Os08g0451700;Note=Conserved hypothetical protein.;Transcript_evidence=AK102108 (DDBJ%2C Best hit);ORF_evidence=B9G179 (UniProt);NIAS_FLcDNA=J033084D20;Expression=AK102108;TENOR=Os08t0451700-01;KEGG=Os08t0451700-01
Chr08	irgsp1_rep	five_prime_UTR	22093509	22093757	.	-	.	Parent=Os08t0451700-01
Chr08	irgsp1_rep	five_prime_UTR	22093271	22093425	.	-	.	Parent=Os08t0451700-01
Chr08	irgsp1_rep	five_prime_UTR	22092741	22092763	.	-	.	Parent=Os08t0451700-01
Chr08	irgsp1_rep	CDS	22092579	22092740	.	-	0	Parent=Os08t0451700-01
Chr08	irgsp1_rep	CDS	22091257	22091448	.	-	0	Parent=Os08t0451700-01
Chr08	irgsp1_rep	CDS	22089831	22089884	.	-	0	Parent=Os08t0451700-01
Chr08	irgsp1_rep	CDS	22089298	22089386	.	-	0	Parent=Os08t0451700-01
Chr08	irgsp1_rep	CDS	22088954	22089206	.	-	1	Parent=Os08t0451700-01
Chr08	irgsp1_rep	CDS	22088804	22088860	.	-	0	Parent=Os08t0451700-01
Chr08	irgsp1_rep	CDS	22088063	22088094	.	-	0	Parent=Os08t0451700-01
Chr08	irgsp1_rep	CDS	22087398	22087533	.	-	1	Parent=Os08t0451700-01
Chr08	irgsp1_rep	CDS	22087149	22087322	.	-	0	Parent=Os08t0451700-01
Chr08	irgsp1_rep	CDS	22086781	22087018	.	-	0	Parent=Os08t0451700-01
Chr08	irgsp1_rep	CDS	22086688	22086695	.	-	2	Parent=Os08t0451700-01
Chr08	irgsp1_rep	three_prime_UTR	22086398	22086687	.	-	.	Parent=Os08t0451700-01
Chr08	irgsp1_rep	three_prime_UTR	22085964	22086078	.	-	.	Parent=Os08t0451700-01
Chr08	irgsp1_rep	three_prime_UTR	22085404	22085609	.	-	.	Parent=Os08t0451700-01
Chr08	irgsp1_rep	three_prime_UTR	22084917	22085186	.	-	.	Parent=Os08t0451700-01
Chr08	irgsp1_rep	mRNA	22082679	22093749	.	-	.	ID=Os08t0451700-02;Name=Os08t0451700-02;Locus_id=Os08g0451700;Note=Conserved hypothetical protein.;Transcript_evidence=AK101935 (DDBJ%2C Best hit);ORF_evidence=B9G179 (UniProt);NIAS_FLcDNA=J033074B07;Expression=AK101935;TENOR=Os08t0451700-02;KEGG=Os08t0451700-02
Chr08	irgsp1_rep	five_prime_UTR	22093509	22093749	.	-	.	Parent=Os08t0451700-02
Chr08	irgsp1_rep	five_prime_UTR	22093271	22093425	.	-	.	Parent=Os08t0451700-02
Chr08	irgsp1_rep	five_prime_UTR	22092741	22092763	.	-	.	Parent=Os08t0451700-02
Chr08	irgsp1_rep	CDS	22092579	22092740	.	-	0	Parent=Os08t0451700-02
Chr08	irgsp1_rep	CDS	22091257	22091448	.	-	0	Parent=Os08t0451700-02
Chr08	irgsp1_rep	CDS	22089831	22089884	.	-	0	Parent=Os08t0451700-02
Chr08	irgsp1_rep	CDS	22089298	22089386	.	-	0	Parent=Os08t0451700-02
Chr08	irgsp1_rep	CDS	22088954	22089206	.	-	1	Parent=Os08t0451700-02
Chr08	irgsp1_rep	CDS	22088804	22088860	.	-	0	Parent=Os08t0451700-02
Chr08	irgsp1_rep	CDS	22088063	22088094	.	-	0	Parent=Os08t0451700-02
Chr08	irgsp1_rep	CDS	22087398	22087533	.	-	1	Parent=Os08t0451700-02
Chr08	irgsp1_rep	CDS	22087149	22087322	.	-	0	Parent=Os08t0451700-02
Chr08	irgsp1_rep	CDS	22086781	22087018	.	-	0	Parent=Os08t0451700-02
Chr08	irgsp1_rep	CDS	22086688	22086695	.	-	2	Parent=Os08t0451700-02
Chr08	irgsp1_rep	three_prime_UTR	22086398	22086687	.	-	.	Parent=Os08t0451700-02
Chr08	irgsp1_rep	three_prime_UTR	22085964	22086078	.	-	.	Parent=Os08t0451700-02
Chr08	irgsp1_rep	three_prime_UTR	22085404	22085609	.	-	.	Parent=Os08t0451700-02
Chr08	irgsp1_rep	three_prime_UTR	22084951	22085186	.	-	.	Parent=Os08t0451700-02
Chr08	irgsp1_rep	three_prime_UTR	22084763	22084876	.	-	.	Parent=Os08t0451700-02
Chr08	irgsp1_rep	three_prime_UTR	22083985	22084318	.	-	.	Parent=Os08t0451700-02
Chr08	irgsp1_rep	three_prime_UTR	22083798	22083857	.	-	.	Parent=Os08t0451700-02
Chr08	irgsp1_rep	three_prime_UTR	22083056	22083226	.	-	.	Parent=Os08t0451700-02
Chr08	irgsp1_rep	three_prime_UTR	22082679	22082972	.	-	.	Parent=Os08t0451700-02
Chr08	irgsp1_rep	mRNA	22082652	22093734	.	-	.	ID=Os08t0451700-03;Name=Os08t0451700-03;Locus_id=Os08g0451700;Note=Conserved hypothetical protein.;Transcript_evidence=AK067357 (DDBJ%2C Best hit);ORF_evidence=B9G178 (UniProt);NIAS_FLcDNA=J013099I15;Expression=AK067357;TENOR=Os08t0451700-03;KEGG=Os08t0451700-03
Chr08	irgsp1_rep	five_prime_UTR	22093509	22093734	.	-	.	Parent=Os08t0451700-03
Chr08	irgsp1_rep	five_prime_UTR	22093024	22093425	.	-	.	Parent=Os08t0451700-03
Chr08	irgsp1_rep	five_prime_UTR	22092741	22092763	.	-	.	Parent=Os08t0451700-03
Chr08	irgsp1_rep	CDS	22092579	22092740	.	-	0	Parent=Os08t0451700-03
Chr08	irgsp1_rep	CDS	22091257	22091448	.	-	0	Parent=Os08t0451700-03
Chr08	irgsp1_rep	CDS	22089831	22089884	.	-	0	Parent=Os08t0451700-03
Chr08	irgsp1_rep	CDS	22089298	22089386	.	-	0	Parent=Os08t0451700-03
Chr08	irgsp1_rep	CDS	22088954	22089206	.	-	1	Parent=Os08t0451700-03
Chr08	irgsp1_rep	CDS	22088804	22088860	.	-	0	Parent=Os08t0451700-03
Chr08	irgsp1_rep	CDS	22088063	22088094	.	-	0	Parent=Os08t0451700-03
Chr08	irgsp1_rep	CDS	22087398	22087533	.	-	1	Parent=Os08t0451700-03
Chr08	irgsp1_rep	CDS	22087149	22087322	.	-	0	Parent=Os08t0451700-03
Chr08	irgsp1_rep	CDS	22086781	22087018	.	-	0	Parent=Os08t0451700-03
Chr08	irgsp1_rep	CDS	22086688	22086695	.	-	2	Parent=Os08t0451700-03
Chr08	irgsp1_rep	three_prime_UTR	22086398	22086687	.	-	.	Parent=Os08t0451700-03
Chr08	irgsp1_rep	three_prime_UTR	22085964	22086078	.	-	.	Parent=Os08t0451700-03
Chr08	irgsp1_rep	three_prime_UTR	22085404	22085609	.	-	.	Parent=Os08t0451700-03
Chr08	irgsp1_rep	three_prime_UTR	22084951	22085186	.	-	.	Parent=Os08t0451700-03
Chr08	irgsp1_rep	three_prime_UTR	22084763	22084834	.	-	.	Parent=Os08t0451700-03
Chr08	irgsp1_rep	three_prime_UTR	22083985	22084318	.	-	.	Parent=Os08t0451700-03
Chr08	irgsp1_rep	three_prime_UTR	22083798	22083857	.	-	.	Parent=Os08t0451700-03
Chr08	irgsp1_rep	three_prime_UTR	22083056	22083291	.	-	.	Parent=Os08t0451700-03
Chr08	irgsp1_rep	three_prime_UTR	22082652	22082972	.	-	.	Parent=Os08t0451700-03
Chr08	irgsp1_rep	mRNA	22104308	22105636	.	+	.	ID=Os08t0451800-01;Name=Os08t0451800-01;Locus_id=Os08g0451800;Note=Zinc finger%2C C6HC-type domain containing protein.;Transcript_evidence=AK110908 (DDBJ%2C Best hit);ORF_evidence=B6U4B5 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C C6HC-type (IPR002867),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907);NIAS_FLcDNA=002-173-B10;Expression=AK110908;TENOR=Os08t0451800-01;KEGG=Os08t0451800-01
Chr08	irgsp1_rep	five_prime_UTR	22104308	22104327	.	+	.	Parent=Os08t0451800-01
Chr08	irgsp1_rep	CDS	22104328	22105202	.	+	0	Parent=Os08t0451800-01
Chr08	irgsp1_rep	CDS	22105324	22105396	.	+	1	Parent=Os08t0451800-01
Chr08	irgsp1_rep	three_prime_UTR	22105397	22105636	.	+	.	Parent=Os08t0451800-01
Chr08	irgsp1_rep	mRNA	22107257	22113534	.	+	.	ID=Os08t0452100-00;Name=Os08t0452100-00;Locus_id=Os08g0452100;Oryzabase Gene Symbol Synonym(s)=OsSub56%2C SUB56;Oryzabase Gene Name Synonym(s)=Subtilisin 56%2C SUBTILISIN 56;Note=Similar to Subtilisin-like serine protease.;Transcript_evidence=tplb0015p12 (Wheat FLcDNA);ORF_evidence=Q8LGA0 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Zinc finger%2C RING-type (IPR001841),Protease-associated domain%2C PA (IPR003137),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Peptidase S8%2C subtilisin-related (IPR015500),Zinc finger%2C RING-type%2C conserved site (IPR017907),Peptidase S8%2C subtilisin%2C  Asp-active site (IPR023827),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);Oryzabase=20140;TENOR=Os08t0452100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	22107257	22107754	.	+	0	Parent=Os08t0452100-00
Chr08	irgsp1_rep	CDS	22111363	22113534	.	+	0	Parent=Os08t0452100-00
Chr08	irgsp1_rep	mRNA	22112815	22113817	.	-	.	ID=Os08t0452200-01;Name=Os08t0452200-01;Locus_id=Os08g0452200;Note=Hypothetical protein.;Transcript_evidence=AK100150 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023015F12;Expression=AK100150;TENOR=Os08t0452200-01;KEGG=Os08t0452200-01
Chr08	irgsp1_rep	five_prime_UTR	22113601	22113817	.	-	.	Parent=Os08t0452200-01
Chr08	irgsp1_rep	CDS	22112920	22113600	.	-	0	Parent=Os08t0452200-01
Chr08	irgsp1_rep	three_prime_UTR	22112815	22112919	.	-	.	Parent=Os08t0452200-01
Chr08	irgsp1_rep	mRNA	22136791	22137705	.	+	.	ID=Os08t0452500-01;Name=Os08t0452500-01;Locus_id=Os08g0452500;CGSNL Gene Symbol=SAUR33;CGSNL Gene Name=SMALL AUXIN-UP RNA 33;Oryzabase Gene Symbol Synonym(s)=OsSAUR33;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 33;Note=Auxin responsive SAUR protein family protein.;Transcript_evidence=AK106714 (DDBJ%2C Best hit);ORF_evidence=B6TUQ7 (UniProt);InterPro=Auxin responsive SAUR protein (IPR003676);NIAS_FLcDNA=002-114-F10;Oryzabase=9158;Expression=AK106714;TENOR=Os08t0452500-01;KEGG=Os08t0452500-01
Chr08	irgsp1_rep	five_prime_UTR	22136791	22136889	.	+	.	Parent=Os08t0452500-01
Chr08	irgsp1_rep	CDS	22136890	22137291	.	+	0	Parent=Os08t0452500-01
Chr08	irgsp1_rep	three_prime_UTR	22137292	22137705	.	+	.	Parent=Os08t0452500-01
Chr08	irgsp1_rep	mRNA	22136836	22137703	.	+	.	ID=Os08t0452500-02;Name=Os08t0452500-02;Locus_id=Os08g0452500;CGSNL Gene Symbol=SAUR33;CGSNL Gene Name=SMALL AUXIN-UP RNA 33;Oryzabase Gene Symbol Synonym(s)=OsSAUR33;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 33;Note=Auxin responsive SAUR protein family protein.;Transcript_evidence=AK102438 (DDBJ%2C Best hit);ORF_evidence=B6TUQ7 (UniProt);InterPro=Auxin responsive SAUR protein (IPR003676);NIAS_FLcDNA=J033093K08;Oryzabase=9158;Expression=AK102438;TENOR=Os08t0452500-02;KEGG=Os08t0452500-02
Chr08	irgsp1_rep	five_prime_UTR	22136836	22136889	.	+	.	Parent=Os08t0452500-02
Chr08	irgsp1_rep	CDS	22136890	22137291	.	+	0	Parent=Os08t0452500-02
Chr08	irgsp1_rep	three_prime_UTR	22137292	22137703	.	+	.	Parent=Os08t0452500-02
Chr08	irgsp1_rep	mRNA	22159610	22161424	.	+	.	ID=Os08t0452900-01;Name=Os08t0452900-01;Locus_id=Os08g0452900;Oryzabase Gene Symbol Synonym(s)=OsDjC62;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C62;Note=Similar to Chaperone protein dnaJ.;Transcript_evidence=AK069153 (DDBJ%2C Best hit);ORF_evidence=B4FBY1 (UniProt);NIAS_FLcDNA=J023007J18;Oryzabase=12219;Expression=AK069153;TENOR=Os08t0452900-01;KEGG=Os08t0452900-01
Chr08	irgsp1_rep	five_prime_UTR	22159610	22159658	.	+	.	Parent=Os08t0452900-01
Chr08	irgsp1_rep	CDS	22159659	22159967	.	+	0	Parent=Os08t0452900-01
Chr08	irgsp1_rep	three_prime_UTR	22159968	22161424	.	+	.	Parent=Os08t0452900-01
Chr08	irgsp1_rep	mRNA	22190140	22191722	.	+	.	ID=Os08t0453200-01;Name=Os08t0453200-01;Locus_id=Os08g0453200;Oryzabase Gene Name Synonym(s)=Dormancyauxin associated family protein;Note=Similar to Auxin-repressed protein.;Transcript_evidence=AK067942 (DDBJ%2C Best hit);ORF_evidence=B6TNR0 (UniProt);NIAS_FLcDNA=J013123A03;Oryzabase=22040;TENOR=Os08t0453200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	22190140	22190140	.	+	.	Parent=Os08t0453200-01
Chr08	irgsp1_rep	CDS	22190141	22190369	.	+	0	Parent=Os08t0453200-01
Chr08	irgsp1_rep	CDS	22191043	22191160	.	+	2	Parent=Os08t0453200-01
Chr08	irgsp1_rep	CDS	22191258	22191285	.	+	1	Parent=Os08t0453200-01
Chr08	irgsp1_rep	three_prime_UTR	22191286	22191722	.	+	.	Parent=Os08t0453200-01
Chr08	irgsp1_rep	mRNA	22191318	22191713	.	+	.	ID=Os08t0453200-02;Name=Os08t0453200-02;Locus_id=Os08g0453200;Oryzabase Gene Name Synonym(s)=Dormancyauxin associated family protein;Note=Non-protein coding transcript.;Transcript_evidence=AK058233 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-011-C08;Oryzabase=22040;TENOR=Os08t0453200-02
Chr08	irgsp1_rep	exon	22191318	22191713	.	+	.	Parent=Os08t0453200-02
Chr08	irgsp1_rep	mRNA	22210390	22219247	.	+	.	ID=Os08t0453700-00;Name=Os08t0453700-00;Locus_id=Os08g0453700;CGSNL Gene Symbol=RBOHF;CGSNL Gene Name=RESPIRATORY BURST OXIDASE HOMOLOG F;Oryzabase Gene Symbol Synonym(s)=RbohF%2C rbohF%2C OsrbohF%2C Os rbohF%2C OsNox6%2C Nox6%2C OsrbohE%2C rbohE;Oryzabase Gene Name Synonym(s)=Respiratory Burst Oxidase Homolog F%2C Respiratory Burst Oxidase Homolog E%2C NADPH oxidase 6;Note=Similar to ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)%3B NAD(P)H oxidase.;Transcript_evidence=AK368020 (DDBJ);ORF_evidence=NP_564821.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: iron ion binding (GO:0005506),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: oxidoreductase activity%2C acting on NADH or NADPH%2C oxygen as acceptor (GO:0050664);InterPro=CytoChrome b245%2C heavy chain (IPR000778),EF-hand-like domain (IPR011992),FAD-binding 8 (IPR013112),Ferric reductase%2C NAD binding (IPR013121),Flavoprotein transmembrane component (IPR013130),NADPH oxidase Respiratory burst (IPR013623),Ferredoxin reductase-type FAD-binding domain (IPR017927),Riboflavin synthase-like beta-barrel (IPR017938),EF-HAND 2 (IPR018249);Oryzabase=10487;TENOR=Os08t0453700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	22210390	22211365	.	+	0	Parent=Os08t0453700-00
Chr08	irgsp1_rep	CDS	22211459	22211618	.	+	2	Parent=Os08t0453700-00
Chr08	irgsp1_rep	CDS	22211717	22211769	.	+	1	Parent=Os08t0453700-00
Chr08	irgsp1_rep	CDS	22212004	22212117	.	+	2	Parent=Os08t0453700-00
Chr08	irgsp1_rep	CDS	22212205	22212353	.	+	2	Parent=Os08t0453700-00
Chr08	irgsp1_rep	CDS	22212421	22212696	.	+	0	Parent=Os08t0453700-00
Chr08	irgsp1_rep	CDS	22213830	22214219	.	+	0	Parent=Os08t0453700-00
Chr08	irgsp1_rep	CDS	22217168	22217263	.	+	0	Parent=Os08t0453700-00
Chr08	irgsp1_rep	CDS	22217886	22218001	.	+	0	Parent=Os08t0453700-00
Chr08	irgsp1_rep	CDS	22218113	22218283	.	+	1	Parent=Os08t0453700-00
Chr08	irgsp1_rep	CDS	22218367	22218526	.	+	1	Parent=Os08t0453700-00
Chr08	irgsp1_rep	CDS	22218629	22218781	.	+	0	Parent=Os08t0453700-00
Chr08	irgsp1_rep	CDS	22218877	22218915	.	+	0	Parent=Os08t0453700-00
Chr08	irgsp1_rep	three_prime_UTR	22218916	22219034	.	+	.	Parent=Os08t0453700-00
Chr08	irgsp1_rep	three_prime_UTR	22219159	22219247	.	+	.	Parent=Os08t0453700-00
Chr08	irgsp1_rep	mRNA	22211458	22219039	.	-	.	ID=Os08t0453716-00;Name=Os08t0453716-00;Locus_id=Os08g0453716;Note=Hypothetical protein.;Transcript_evidence=tplb0025i04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0453716-00
Chr08	irgsp1_rep	five_prime_UTR	22218935	22219039	.	-	.	Parent=Os08t0453716-00
Chr08	irgsp1_rep	five_prime_UTR	22218688	22218845	.	-	.	Parent=Os08t0453716-00
Chr08	irgsp1_rep	five_prime_UTR	22218372	22218535	.	-	.	Parent=Os08t0453716-00
Chr08	irgsp1_rep	five_prime_UTR	22218117	22218298	.	-	.	Parent=Os08t0453716-00
Chr08	irgsp1_rep	five_prime_UTR	22217868	22218007	.	-	.	Parent=Os08t0453716-00
Chr08	irgsp1_rep	five_prime_UTR	22214178	22214284	.	-	.	Parent=Os08t0453716-00
Chr08	irgsp1_rep	CDS	22213841	22214177	.	-	0	Parent=Os08t0453716-00
Chr08	irgsp1_rep	CDS	22212373	22212709	.	-	2	Parent=Os08t0453716-00
Chr08	irgsp1_rep	CDS	22212108	22212213	.	-	1	Parent=Os08t0453716-00
Chr08	irgsp1_rep	three_prime_UTR	22212002	22212107	.	-	.	Parent=Os08t0453716-00
Chr08	irgsp1_rep	three_prime_UTR	22211458	22211652	.	-	.	Parent=Os08t0453716-00
Chr08	irgsp1_rep	mRNA	22219476	22219873	.	+	.	ID=Os08t0453733-00;Name=Os08t0453733-00;Locus_id=Os08g0453733;Note=Non-protein coding transcript.;Transcript_evidence=CT836006 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os08t0453733-00
Chr08	irgsp1_rep	exon	22219476	22219873	.	+	.	Parent=Os08t0453733-00
Chr08	irgsp1_rep	mRNA	22219950	22227416	.	+	.	ID=Os08t0453766-01;Name=Os08t0453766-01;Locus_id=Os08g0453766;Note=Hypothetical gene.;Transcript_evidence=AK241084 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065073O20;TENOR=Os08t0453766-01;KEGG=Os08t0453766-01
Chr08	irgsp1_rep	five_prime_UTR	22219950	22220360	.	+	.	Parent=Os08t0453766-01
Chr08	irgsp1_rep	five_prime_UTR	22221891	22221948	.	+	.	Parent=Os08t0453766-01
Chr08	irgsp1_rep	five_prime_UTR	22222055	22222115	.	+	.	Parent=Os08t0453766-01
Chr08	irgsp1_rep	CDS	22222116	22222194	.	+	0	Parent=Os08t0453766-01
Chr08	irgsp1_rep	CDS	22223904	22224021	.	+	2	Parent=Os08t0453766-01
Chr08	irgsp1_rep	CDS	22224159	22224174	.	+	1	Parent=Os08t0453766-01
Chr08	irgsp1_rep	three_prime_UTR	22224175	22224276	.	+	.	Parent=Os08t0453766-01
Chr08	irgsp1_rep	three_prime_UTR	22224361	22224433	.	+	.	Parent=Os08t0453766-01
Chr08	irgsp1_rep	three_prime_UTR	22225501	22225598	.	+	.	Parent=Os08t0453766-01
Chr08	irgsp1_rep	three_prime_UTR	22225757	22225783	.	+	.	Parent=Os08t0453766-01
Chr08	irgsp1_rep	three_prime_UTR	22225866	22225956	.	+	.	Parent=Os08t0453766-01
Chr08	irgsp1_rep	three_prime_UTR	22226060	22226141	.	+	.	Parent=Os08t0453766-01
Chr08	irgsp1_rep	three_prime_UTR	22227224	22227416	.	+	.	Parent=Os08t0453766-01
Chr08	irgsp1_rep	mRNA	22220068	22227461	.	-	.	ID=Os08t0453800-00;Name=Os08t0453800-00;Locus_id=Os08g0453800;CGSNL Gene Symbol=CDKC%3B3;CGSNL Gene Name=CYCLIN-DEPENDENT KINASE C%3B3;Oryzabase Gene Symbol Synonym(s)=CDKC%3B3%2C Orysa%3BCDKC%3B3;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=CT836026 (DDBJ%2C Best hit);ORF_evidence=Q6ZAG3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=13292;TENOR=Os08t0453800-00;KEGG=Os08t0453800-00 (EC:2.7.11.22)
Chr08	irgsp1_rep	five_prime_UTR	22227224	22227461	.	-	.	Parent=Os08t0453800-00
Chr08	irgsp1_rep	five_prime_UTR	22226246	22226487	.	-	.	Parent=Os08t0453800-00
Chr08	irgsp1_rep	CDS	22226060	22226245	.	-	0	Parent=Os08t0453800-00
Chr08	irgsp1_rep	CDS	22225866	22225956	.	-	0	Parent=Os08t0453800-00
Chr08	irgsp1_rep	CDS	22225757	22225783	.	-	2	Parent=Os08t0453800-00
Chr08	irgsp1_rep	CDS	22225501	22225598	.	-	2	Parent=Os08t0453800-00
Chr08	irgsp1_rep	CDS	22224361	22224433	.	-	0	Parent=Os08t0453800-00
Chr08	irgsp1_rep	CDS	22224159	22224276	.	-	2	Parent=Os08t0453800-00
Chr08	irgsp1_rep	CDS	22223904	22224021	.	-	1	Parent=Os08t0453800-00
Chr08	irgsp1_rep	CDS	22222055	22222194	.	-	0	Parent=Os08t0453800-00
Chr08	irgsp1_rep	CDS	22221891	22221948	.	-	1	Parent=Os08t0453800-00
Chr08	irgsp1_rep	CDS	22220307	22220360	.	-	0	Parent=Os08t0453800-00
Chr08	irgsp1_rep	three_prime_UTR	22220068	22220306	.	-	.	Parent=Os08t0453800-00
Chr08	irgsp1_rep	mRNA	22236504	22237250	.	+	.	ID=Os08t0454000-01;Name=Os08t0454000-01;Locus_id=Os08g0454000;RAP-DB Gene Symbol Synonym(s)=ERF12%2C OsERF#012%2C OsERF012%2C OsERF12%2C OsDERF1%2C DERF1%2C AP2/EREBP#070%2C AP2/EREBP70;RAP-DB Gene Name Synonym(s)=ETHYLENE RESPONSE FACTOR 12%2C ethylene response factor 12%2C drought-responsive ethylene response factor 1%2C drought-responsive ERF 1%2C APETALA2/ethylene-responsive element binding protein 70;CGSNL Gene Symbol=ERF12;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 12;Oryzabase Gene Symbol Synonym(s)=OsERF#012%2C OsERF012%2C OsERF12%2C OsDERF1%2C DERF1%2C AP2/EREBP#070%2C AP2/EREBP70;Oryzabase Gene Name Synonym(s)=ethylene response factor 12%2C drought-responsive ethylene response factor 1%2C drought-responsive ERF 1%2C APETALA2/ethylene-responsive element binding protein 70;Note=Drought-responsive ethylene response factor%2C Transcriptional activator%2C Drought response through controlling the ethylene synthesis;Transcript_evidence=Inferred from literature;ORF_evidence=Q6ZAG1;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700);InterPro=DNA-binding domain (IPR016177),AP2/ERF domain (IPR001471);Manual Curation=November 20%2C 2015;Literature_PMID=21966459;Oryzabase=9687;TENOR=Os08t0454000-00
Chr08	irgsp1_rep	five_prime_UTR	22236504	22236518	.	+	.	Parent=Os08t0454000-01
Chr08	irgsp1_rep	CDS	22236519	22237250	.	+	0	Parent=Os08t0454000-01
Chr08	irgsp1_rep	mRNA	22277838	22279910	.	-	.	ID=Os08t0454500-00;Name=Os08t0454500-00;Locus_id=Os08g0454500;Note=Similar to Flavonoid 7-O-methyltransferase.;Transcript_evidence=BT039525 (DDBJ);ORF_evidence=Q43771 (UniProt);GO=Molecular Function: O-methyltransferase activity (GO:0008171);InterPro=O-methyltransferase%2C family 2 (IPR001077);TENOR=Os08t0454500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	22279582	22279910	.	-	.	Parent=Os08t0454500-00
Chr08	irgsp1_rep	CDS	22279144	22279581	.	-	0	Parent=Os08t0454500-00
Chr08	irgsp1_rep	CDS	22277856	22278152	.	-	0	Parent=Os08t0454500-00
Chr08	irgsp1_rep	three_prime_UTR	22277838	22277855	.	-	.	Parent=Os08t0454500-00
Chr08	irgsp1_rep	mRNA	22280674	22281656	.	-	.	ID=Os08t0454600-01;Name=Os08t0454600-01;Locus_id=Os08g0454600;Note=Hypothetical protein.;Transcript_evidence=AK060308 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-007-A12;TENOR=Os08t0454600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	22281505	22281656	.	-	.	Parent=Os08t0454600-01
Chr08	irgsp1_rep	CDS	22281208	22281504	.	-	0	Parent=Os08t0454600-01
Chr08	irgsp1_rep	three_prime_UTR	22280674	22281207	.	-	.	Parent=Os08t0454600-01
Chr08	irgsp1_rep	mRNA	22334606	22336123	.	+	.	ID=Os08t0455600-01;Name=Os08t0455600-01;Locus_id=Os08g0455600;Oryzabase Gene Symbol Synonym(s)=OsPP101;Oryzabase Gene Name Synonym(s)=Protein phosphatase 101;Note=Similar to Serine/threonine protein phosphatase PP1-alpha catalytic subunit (EC 3.1.3.16) (PP-1A). Splice isoform 1.;Transcript_evidence=AK121378 (DDBJ%2C Best hit);ORF_evidence=B9G188 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Metallophosphoesterase domain (IPR004843),Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (IPR006186);NIAS_FLcDNA=J023127F14;Oryzabase=18650;Expression=AK121378;TENOR=Os08t0455600-01;KEGG=Os08t0455600-01 (EC:3.1.3.16)
Chr08	irgsp1_rep	five_prime_UTR	22334606	22334722	.	+	.	Parent=Os08t0455600-01
Chr08	irgsp1_rep	CDS	22334723	22334912	.	+	0	Parent=Os08t0455600-01
Chr08	irgsp1_rep	CDS	22334997	22335553	.	+	2	Parent=Os08t0455600-01
Chr08	irgsp1_rep	CDS	22335663	22335839	.	+	0	Parent=Os08t0455600-01
Chr08	irgsp1_rep	three_prime_UTR	22335840	22336123	.	+	.	Parent=Os08t0455600-01
Chr08	irgsp1_rep	mRNA	22355055	22355441	.	+	.	ID=Os08t0455700-01;Name=Os08t0455700-01;Locus_id=Os08g0455700;CGSNL Gene Symbol=EXO70D2;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN D2;Oryzabase Gene Symbol Synonym(s)=OsEXO70D2%2C OsExo70D2%2C OrysaD2_Exo70;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein D2;Note=Similar to predicted protein.;Transcript_evidence=AK240992 (DDBJ%2C Best hit),AK240990 (DDBJ%2C Best hit);ORF_evidence=NP_001061962.1 (RefSeq);GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exo70 exocyst complex subunit (IPR004140);NIAS_FLcDNA=J065051P07,J065051I09;Oryzabase=20329;TENOR=Os08t0455700-01;KEGG=Os08t0455700-01
Chr08	irgsp1_rep	five_prime_UTR	22355055	22355055	.	+	.	Parent=Os08t0455700-01
Chr08	irgsp1_rep	CDS	22355056	22355166	.	+	0	Parent=Os08t0455700-01
Chr08	irgsp1_rep	three_prime_UTR	22355167	22355441	.	+	.	Parent=Os08t0455700-01
Chr08	irgsp1_rep	mRNA	22358472	22361015	.	+	.	ID=Os08t0455800-01;Name=Os08t0455800-01;Locus_id=Os08g0455800;Note=RmlC-like jelly roll fold domain containing protein.;Transcript_evidence=AK061573 (DDBJ%2C Best hit);ORF_evidence=Q9LMB4 (UniProt);InterPro=Protein of unknown function DUF985 (IPR009327),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710);NIAS_FLcDNA=006-311-G01;Expression=AK061573;TENOR=Os08t0455800-01;KEGG=Os08t0455800-01
Chr08	irgsp1_rep	five_prime_UTR	22358472	22358658	.	+	.	Parent=Os08t0455800-01
Chr08	irgsp1_rep	CDS	22358659	22358794	.	+	0	Parent=Os08t0455800-01
Chr08	irgsp1_rep	CDS	22360232	22360353	.	+	2	Parent=Os08t0455800-01
Chr08	irgsp1_rep	CDS	22360469	22360795	.	+	0	Parent=Os08t0455800-01
Chr08	irgsp1_rep	three_prime_UTR	22360796	22361015	.	+	.	Parent=Os08t0455800-01
Chr08	irgsp1_rep	mRNA	22358533	22361003	.	+	.	ID=Os08t0455800-02;Name=Os08t0455800-02;Locus_id=Os08g0455800;Note=RmlC-like jelly roll fold domain containing protein.;Transcript_evidence=AK099156 (DDBJ%2C Best hit);ORF_evidence=Q9LMB4 (UniProt);InterPro=Protein of unknown function DUF985 (IPR009327),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710);NIAS_FLcDNA=J023067L05;Expression=AK099156;TENOR=Os08t0455800-02;KEGG=Os08t0455800-02
Chr08	irgsp1_rep	five_prime_UTR	22358533	22358658	.	+	.	Parent=Os08t0455800-02
Chr08	irgsp1_rep	CDS	22358659	22358794	.	+	0	Parent=Os08t0455800-02
Chr08	irgsp1_rep	CDS	22360232	22360353	.	+	2	Parent=Os08t0455800-02
Chr08	irgsp1_rep	CDS	22360469	22360795	.	+	0	Parent=Os08t0455800-02
Chr08	irgsp1_rep	three_prime_UTR	22360796	22361003	.	+	.	Parent=Os08t0455800-02
Chr08	irgsp1_rep	mRNA	22362338	22362868	.	+	.	ID=Os08t0455900-00;Name=Os08t0455900-00;Locus_id=Os08g0455900;CGSNL Gene Symbol=COPT6;CGSNL Gene Name=COPPER TRANSPORTER 6;Oryzabase Gene Symbol Synonym(s)=COPT6%2C OsCOPT6;Oryzabase Gene Name Synonym(s)=copper transporter 6;Note=Putative copper transporter 5.2.;Transcript_evidence=Q6Z0Q9 (UniProt);ORF_evidence=Q6Z0Q9 (UniProt);GO=Biological Process: copper ion transmembrane transport (GO:0035434),Cellular Component: integral to membrane (GO:0016021),Molecular Function: copper ion transmembrane transporter activity (GO:0005375);InterPro=Ctr copper transporter (IPR007274);Oryzabase=12127;TENOR=Os08t0455900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	22362338	22362868	.	+	0	Parent=Os08t0455900-00
Chr08	irgsp1_rep	mRNA	22364508	22365925	.	+	.	ID=Os08t0456000-00;Name=Os08t0456000-00;Locus_id=Os08g0456000;Note=Hypothetical gene.;Transcript_evidence=AK106670 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;Expression=AK106670;TENOR=Os08t0456000-00;KEGG=Os08t0456000-00
Chr08	irgsp1_rep	five_prime_UTR	22364508	22364541	.	+	.	Parent=Os08t0456000-00
Chr08	irgsp1_rep	CDS	22364542	22365174	.	+	0	Parent=Os08t0456000-00
Chr08	irgsp1_rep	CDS	22365199	22365453	.	+	0	Parent=Os08t0456000-00
Chr08	irgsp1_rep	three_prime_UTR	22365454	22365925	.	+	.	Parent=Os08t0456000-00
Chr08	irgsp1_rep	mRNA	22369333	22371011	.	-	.	ID=Os08t0456200-00;Name=Os08t0456200-00;Locus_id=Os08g0456200;Note=Similar to flavonoid 3-monooxygenase.;Transcript_evidence=AK366219 (DDBJ);ORF_evidence=NP_001147572.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os08t0456200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	22370940	22371011	.	-	.	Parent=Os08t0456200-00
Chr08	irgsp1_rep	CDS	22369377	22370939	.	-	0	Parent=Os08t0456200-00
Chr08	irgsp1_rep	three_prime_UTR	22369333	22369376	.	-	.	Parent=Os08t0456200-00
Chr08	irgsp1_rep	mRNA	22381757	22382050	.	-	.	ID=Os08t0456450-01;Name=Os08t0456450-01;Locus_id=Os08g0456450;RAP-DB Gene Symbol Synonym(s)=ALEX1;RAP-DB Gene Name Synonym(s)=An Leaf Expressed and Xoo-induced lncRNA 1;CGSNL Gene Symbol=ALEX1;CGSNL Gene Name=AN LEAF EXPRESSED AND XOO-INDUCED LNCRNA 1;Oryzabase Gene Symbol Synonym(s)=OsALEX1;Oryzabase Gene Name Synonym(s)=An Leaf Expressed and Xoo-induced lncRNA 1;Note=Pathogen-responsive long noncoding RNA (lncRNA)%2C Resistance to rice bacterial blight%2C Regulation of jasmonate pathway;Transcript_evidence=Inferred from literature;ORF_evidence=NONE;Manual Curation=July 13%2C 2020;Literature_PMID=31419052;Oryzabase=23396
Chr08	irgsp1_rep	exon	22381757	22382050	.	-	.	Parent=Os08t0456450-01
Chr08	irgsp1_rep	mRNA	22380599	22384223	.	+	.	ID=Os08t0456600-01;Name=Os08t0456600-01;Locus_id=Os08g0456600;RAP-DB Gene Symbol Synonym(s)=GGC2;CGSNL Gene Symbol=GGC2;Oryzabase Gene Symbol Synonym(s)=OsGGC2;Oryzabase Gene Name Synonym(s)=G gamma subunit GGC2;Note=G&gamma%3B protein%2C G-gamma protein%2C Positive regulation of grain length;Transcript_evidence=AK059009 (truncated),XM_015794106;ORF_evidence=XP_015649592.1;GO=Biological Process: G-protein coupled receptor signaling pathway (GO:0007186);InterPro=G-protein gamma-like domain (IPR015898);NIAS_FLcDNA=001-020-H09 (truncated);Manual Curation=June 27%2C 2018;Literature_PMID=29487318;Oryzabase=22271;TENOR=Os08t0456600-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	22380599	22381063	.	+	.	Parent=Os08t0456600-01
Chr08	irgsp1_rep	CDS	22381064	22381174	.	+	0	Parent=Os08t0456600-01
Chr08	irgsp1_rep	CDS	22381928	22381980	.	+	0	Parent=Os08t0456600-01
Chr08	irgsp1_rep	CDS	22382565	22382609	.	+	1	Parent=Os08t0456600-01
Chr08	irgsp1_rep	CDS	22382701	22382745	.	+	1	Parent=Os08t0456600-01
Chr08	irgsp1_rep	CDS	22383358	22384111	.	+	1	Parent=Os08t0456600-01
Chr08	irgsp1_rep	three_prime_UTR	22384112	22384223	.	+	.	Parent=Os08t0456600-01
Chr08	irgsp1_rep	mRNA	22401259	22404068	.	+	.	ID=Os08t0457000-01;Name=Os08t0457000-01;Locus_id=Os08g0457000;Oryzabase Gene Symbol Synonym(s)=OsSTA214;Note=Conserved hypothetical protein.;Transcript_evidence=AK106916 (DDBJ%2C Best hit);ORF_evidence=A3BTS9 (UniProt);NIAS_FLcDNA=002-119-A12;Oryzabase=19486;TENOR=Os08t0457000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	22401259	22403530	.	+	.	Parent=Os08t0457000-01
Chr08	irgsp1_rep	CDS	22403531	22403965	.	+	0	Parent=Os08t0457000-01
Chr08	irgsp1_rep	three_prime_UTR	22403966	22404068	.	+	.	Parent=Os08t0457000-01
Chr08	irgsp1_rep	mRNA	22408403	22408953	.	+	.	ID=Os08t0457100-01;Name=Os08t0457100-01;Locus_id=Os08g0457100;Note=Conserved hypothetical protein.;Transcript_evidence=AK108546 (DDBJ%2C Best hit);ORF_evidence=A2YVW4 (UniProt);NIAS_FLcDNA=002-144-D11;Expression=AK108546;TENOR=Os08t0457100-01;KEGG=Os08t0457100-01
Chr08	irgsp1_rep	five_prime_UTR	22408403	22408542	.	+	.	Parent=Os08t0457100-01
Chr08	irgsp1_rep	CDS	22408543	22408935	.	+	0	Parent=Os08t0457100-01
Chr08	irgsp1_rep	three_prime_UTR	22408936	22408953	.	+	.	Parent=Os08t0457100-01
Chr08	irgsp1_rep	mRNA	22414383	22415023	.	+	.	ID=Os08t0457300-00;Name=Os08t0457300-00;Locus_id=Os08g0457300;Note=Hypothetical conserved gene.;Transcript_evidence=CT836013 (DDBJ%2C Best hit);ORF_evidence=Q6Z0P9 (UniProt);TENOR=Os08t0457300-00;KEGG=Os08t0457300-00
Chr08	irgsp1_rep	five_prime_UTR	22414383	22414456	.	+	.	Parent=Os08t0457300-00
Chr08	irgsp1_rep	CDS	22414457	22414918	.	+	0	Parent=Os08t0457300-00
Chr08	irgsp1_rep	three_prime_UTR	22414919	22415023	.	+	.	Parent=Os08t0457300-00
Chr08	irgsp1_rep	mRNA	22415878	22418614	.	-	.	ID=Os08t0457400-01;Name=Os08t0457400-01;Locus_id=Os08g0457400;CGSNL Gene Symbol=RLCK255;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 255;Oryzabase Gene Symbol Synonym(s)=OsRLCK255%2C PTK13%2C OsPTK13;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 255%2C Protein Tyrosine Kinase 13;Note=Similar to Avr9/Cf-9 induced kinase 1.;Transcript_evidence=AK106955 (DDBJ%2C Best hit);ORF_evidence=B6ST24 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=002-119-E08;Oryzabase=18945;Expression=AK106955;TENOR=Os08t0457400-01;KEGG=Os08t0457400-01
Chr08	irgsp1_rep	five_prime_UTR	22418466	22418614	.	-	.	Parent=Os08t0457400-01
Chr08	irgsp1_rep	CDS	22418028	22418465	.	-	0	Parent=Os08t0457400-01
Chr08	irgsp1_rep	CDS	22417791	22417926	.	-	0	Parent=Os08t0457400-01
Chr08	irgsp1_rep	CDS	22417431	22417567	.	-	2	Parent=Os08t0457400-01
Chr08	irgsp1_rep	CDS	22416136	22416861	.	-	0	Parent=Os08t0457400-01
Chr08	irgsp1_rep	three_prime_UTR	22415878	22416135	.	-	.	Parent=Os08t0457400-01
Chr08	irgsp1_rep	mRNA	22446547	22450402	.	+	.	ID=Os08t0457600-01;Name=Os08t0457600-01;Locus_id=Os08g0457600;Note=Similar to RSH2.;Transcript_evidence=AK065020 (DDBJ%2C Best hit);ORF_evidence=Q7XAP3 (UniProt);GO=Biological Process: guanosine tetraphosphate metabolic process (GO:0015969),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphoric diester hydrolase activity (GO:0008081),Molecular Function: metal ion binding (GO:0046872);InterPro=Metal-dependent phosphohydrolase%2C HD domain (IPR003607),RelA/SpoT protein (IPR004811),Metal-dependent phosphohydrolase%2C HD subdomain (IPR006674),RelA/SpoT (IPR007685);NIAS_FLcDNA=J013001F20;Expression=AK065020;TENOR=Os08t0457600-01;KEGG=Os08t0457600-01
Chr08	irgsp1_rep	five_prime_UTR	22446547	22446902	.	+	.	Parent=Os08t0457600-01
Chr08	irgsp1_rep	CDS	22446903	22447607	.	+	0	Parent=Os08t0457600-01
Chr08	irgsp1_rep	CDS	22447735	22447920	.	+	0	Parent=Os08t0457600-01
Chr08	irgsp1_rep	CDS	22448551	22449011	.	+	0	Parent=Os08t0457600-01
Chr08	irgsp1_rep	CDS	22449110	22449268	.	+	1	Parent=Os08t0457600-01
Chr08	irgsp1_rep	CDS	22449339	22449690	.	+	1	Parent=Os08t0457600-01
Chr08	irgsp1_rep	CDS	22449804	22450097	.	+	0	Parent=Os08t0457600-01
Chr08	irgsp1_rep	three_prime_UTR	22450098	22450402	.	+	.	Parent=Os08t0457600-01
Chr08	irgsp1_rep	mRNA	22446853	22450402	.	+	.	ID=Os08t0457600-02;Name=Os08t0457600-02;Locus_id=Os08g0457600;Note=Similar to RSH2.;Transcript_evidence=AK099624 (DDBJ%2C Best hit);ORF_evidence=Q7XAP3 (UniProt);GO=Biological Process: guanosine tetraphosphate metabolic process (GO:0015969),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphoric diester hydrolase activity (GO:0008081),Molecular Function: metal ion binding (GO:0046872);InterPro=Metal-dependent phosphohydrolase%2C HD domain (IPR003607),RelA/SpoT protein (IPR004811),Metal-dependent phosphohydrolase%2C HD subdomain (IPR006674),RelA/SpoT (IPR007685);NIAS_FLcDNA=J013054J20;Expression=AK099624;TENOR=Os08t0457600-02;KEGG=Os08t0457600-02
Chr08	irgsp1_rep	five_prime_UTR	22446853	22446902	.	+	.	Parent=Os08t0457600-02
Chr08	irgsp1_rep	CDS	22446903	22447607	.	+	0	Parent=Os08t0457600-02
Chr08	irgsp1_rep	CDS	22447735	22447920	.	+	0	Parent=Os08t0457600-02
Chr08	irgsp1_rep	CDS	22448551	22449011	.	+	0	Parent=Os08t0457600-02
Chr08	irgsp1_rep	CDS	22449110	22449268	.	+	1	Parent=Os08t0457600-02
Chr08	irgsp1_rep	CDS	22449339	22449690	.	+	1	Parent=Os08t0457600-02
Chr08	irgsp1_rep	CDS	22449804	22450097	.	+	0	Parent=Os08t0457600-02
Chr08	irgsp1_rep	three_prime_UTR	22450098	22450402	.	+	.	Parent=Os08t0457600-02
Chr08	irgsp1_rep	mRNA	22450471	22450902	.	+	.	ID=Os08t0457901-00;Name=Os08t0457901-00;Locus_id=Os08g0457901;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os08t0457901-00;KEGG=Os08t0457901-00
Chr08	irgsp1_rep	CDS	22450471	22450902	.	+	0	Parent=Os08t0457901-00
Chr08	irgsp1_rep	mRNA	22462399	22464860	.	+	.	ID=Os08t0458200-01;Name=Os08t0458200-01;Locus_id=Os08g0458200;CGSNL Gene Symbol=O3L6;CGSNL Gene Name=OXS3-LIKE 6;Oryzabase Gene Symbol Synonym(s)=OsO3L6;Oryzabase Gene Name Synonym(s)=OXIDATIVE STRESS 3-like 6%2C OXS3-like 6;Note=Similar to MTD1.;Transcript_evidence=AK061399 (DDBJ%2C Best hit);ORF_evidence=NP_001148816.1 (RefSeq);NIAS_FLcDNA=006-305-F06;Oryzabase=22449;Expression=AK061399;TENOR=Os08t0458200-01;KEGG=Os08t0458200-01
Chr08	irgsp1_rep	five_prime_UTR	22462399	22462513	.	+	.	Parent=Os08t0458200-01
Chr08	irgsp1_rep	CDS	22462514	22462716	.	+	0	Parent=Os08t0458200-01
Chr08	irgsp1_rep	CDS	22464158	22464653	.	+	1	Parent=Os08t0458200-01
Chr08	irgsp1_rep	three_prime_UTR	22464654	22464860	.	+	.	Parent=Os08t0458200-01
Chr08	irgsp1_rep	mRNA	22492748	22497785	.	-	.	ID=Os08t0458600-01;Name=Os08t0458600-01;Locus_id=Os08g0458600;CGSNL Gene Symbol=RR33;CGSNL Gene Name=B-TYPE RESPONSE REGULATOR 33;Oryzabase Gene Symbol Synonym(s)=OsRR33%2C Rra19%2C OsRRA19;Oryzabase Gene Name Synonym(s)=response regulator 33%2C A-type response regulator 19%2C A-type RR 19;Note=Signal transduction response regulator%2C receiver region domain containing protein.;Transcript_evidence=AK107384 (DDBJ%2C Best hit);ORF_evidence=A2YVX1 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: two-component response regulator activity (GO:0000156);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),CheY-like superfamily (IPR011006);NIAS_FLcDNA=002-127-C05;Oryzabase=9835;Expression=AK107384;TENOR=Os08t0458600-01;KEGG=Os08t0458600-01
Chr08	irgsp1_rep	five_prime_UTR	22497681	22497785	.	-	.	Parent=Os08t0458600-01
Chr08	irgsp1_rep	CDS	22497566	22497680	.	-	0	Parent=Os08t0458600-01
Chr08	irgsp1_rep	CDS	22496580	22496741	.	-	2	Parent=Os08t0458600-01
Chr08	irgsp1_rep	CDS	22495697	22496071	.	-	2	Parent=Os08t0458600-01
Chr08	irgsp1_rep	CDS	22495077	22495123	.	-	2	Parent=Os08t0458600-01
Chr08	irgsp1_rep	CDS	22492955	22494100	.	-	0	Parent=Os08t0458600-01
Chr08	irgsp1_rep	three_prime_UTR	22492748	22492954	.	-	.	Parent=Os08t0458600-01
Chr08	irgsp1_rep	mRNA	22522367	22528882	.	-	.	ID=Os08t0459100-01;Name=Os08t0459100-01;Locus_id=Os08g0459100;Note=Leucine-rich repeat%2C cysteine-containing containing protein.;Transcript_evidence=AK121795 (DDBJ%2C Best hit);ORF_evidence=A3BTU1 (UniProt);NIAS_FLcDNA=J033095K05;Expression=AK121795;TENOR=Os08t0459100-01;KEGG=Os08t0459100-01
Chr08	irgsp1_rep	five_prime_UTR	22528746	22528882	.	-	.	Parent=Os08t0459100-01
Chr08	irgsp1_rep	CDS	22526964	22528745	.	-	0	Parent=Os08t0459100-01
Chr08	irgsp1_rep	CDS	22526067	22526500	.	-	0	Parent=Os08t0459100-01
Chr08	irgsp1_rep	CDS	22525221	22525382	.	-	1	Parent=Os08t0459100-01
Chr08	irgsp1_rep	CDS	22523824	22523899	.	-	1	Parent=Os08t0459100-01
Chr08	irgsp1_rep	CDS	22523233	22523391	.	-	0	Parent=Os08t0459100-01
Chr08	irgsp1_rep	CDS	22522567	22522659	.	-	0	Parent=Os08t0459100-01
Chr08	irgsp1_rep	three_prime_UTR	22522367	22522566	.	-	.	Parent=Os08t0459100-01
Chr08	irgsp1_rep	mRNA	22530078	22532479	.	-	.	ID=Os08t0459300-01;Name=Os08t0459300-01;Locus_id=Os08g0459300;Note=Conserved hypothetical protein.;Transcript_evidence=AK060409 (DDBJ%2C Best hit);ORF_evidence=B8BBB2 (UniProt);NIAS_FLcDNA=001-010-D09;Expression=AK060409;TENOR=Os08t0459300-01;KEGG=Os08t0459300-01
Chr08	irgsp1_rep	five_prime_UTR	22532289	22532479	.	-	.	Parent=Os08t0459300-01
Chr08	irgsp1_rep	CDS	22532195	22532288	.	-	0	Parent=Os08t0459300-01
Chr08	irgsp1_rep	CDS	22530352	22530938	.	-	2	Parent=Os08t0459300-01
Chr08	irgsp1_rep	three_prime_UTR	22530078	22530351	.	-	.	Parent=Os08t0459300-01
Chr08	irgsp1_rep	mRNA	22530043	22532404	.	-	.	ID=Os08t0459300-02;Name=Os08t0459300-02;Locus_id=Os08g0459300;Note=Conserved hypothetical protein.;Transcript_evidence=AK101386 (DDBJ%2C Best hit);ORF_evidence=B8BBB2 (UniProt);NIAS_FLcDNA=J033036F14;Expression=AK101386;TENOR=Os08t0459300-02;KEGG=Os08t0459300-02
Chr08	irgsp1_rep	five_prime_UTR	22532289	22532404	.	-	.	Parent=Os08t0459300-02
Chr08	irgsp1_rep	CDS	22532195	22532288	.	-	0	Parent=Os08t0459300-02
Chr08	irgsp1_rep	CDS	22530352	22530938	.	-	2	Parent=Os08t0459300-02
Chr08	irgsp1_rep	three_prime_UTR	22530043	22530351	.	-	.	Parent=Os08t0459300-02
Chr08	irgsp1_rep	mRNA	22530142	22532489	.	+	.	ID=Os08t0459333-00;Name=Os08t0459333-00;Locus_id=Os08g0459333;Note=Hypothetical gene.;Transcript_evidence=BT084645 (DDBJ);ORF_evidence=GeneMark;TENOR=Os08t0459333-00;KEGG=Os08t0459333-00
Chr08	irgsp1_rep	five_prime_UTR	22530142	22530199	.	+	.	Parent=Os08t0459333-00
Chr08	irgsp1_rep	CDS	22530200	22530628	.	+	0	Parent=Os08t0459333-00
Chr08	irgsp1_rep	three_prime_UTR	22530629	22530933	.	+	.	Parent=Os08t0459333-00
Chr08	irgsp1_rep	three_prime_UTR	22532188	22532489	.	+	.	Parent=Os08t0459333-00
Chr08	irgsp1_rep	mRNA	22547184	22550675	.	+	.	ID=Os08t0459600-01;Name=Os08t0459600-01;Locus_id=Os08g0459600;RAP-DB Gene Symbol Synonym(s)=OPR7%2C OsOPR08-1%2C OsOPR13%2C OsOPR7;RAP-DB Gene Name Synonym(s)=12-OXOPHYTODIENOATE REDUCTASE 7%2C 12-oxophytodienoate reductase 7%2C OPDA reductase 7;CGSNL Gene Symbol=OG1;CGSNL Gene Name=OPEN GLUME1;Oryzabase Gene Symbol Synonym(s)=OsOPR7%2C OPR7%2C OsOPR13%2C OsOPR3%2C OsOPR5%2C OsOPR9%2C OsOPR08-1%2C OPR13%2C OPR3%2C OPR5%2C OPR9%2C OPR08-1;Oryzabase Gene Name Synonym(s)=12-oxo-phytodienoic acid reductase 7%2C 12-oxophytodienoate reductase7%2C OPDA reductase 7%2C open glume 1;Note=12-oxophytodienoate reductase (EC:1.3.1.42)%2C Jasmonic acid (JA) biosynthesis;Transcript_evidence=AK071203,AK104843;ORF_evidence=Q6Z965;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldolase-type TIM barrel (IPR013785),NADH:flavin oxidoreductase/NADH oxidase%2C N-terminal (IPR001155);NIAS_FLcDNA=J023083E07, 001-042-G07;Manual Curation=May 9%2C 2017;Literature_PMID=21249367,17938955;Oryzabase=8761;TENOR=Os08t0459600-01;Subcellular location=peroxisome (GO:0005777)
Chr08	irgsp1_rep	five_prime_UTR	22547184	22547318	.	+	.	Parent=Os08t0459600-01
Chr08	irgsp1_rep	CDS	22547319	22547407	.	+	0	Parent=Os08t0459600-01
Chr08	irgsp1_rep	CDS	22547521	22547661	.	+	1	Parent=Os08t0459600-01
Chr08	irgsp1_rep	CDS	22548392	22548522	.	+	1	Parent=Os08t0459600-01
Chr08	irgsp1_rep	CDS	22549519	22549701	.	+	2	Parent=Os08t0459600-01
Chr08	irgsp1_rep	CDS	22549796	22550436	.	+	2	Parent=Os08t0459600-01
Chr08	irgsp1_rep	three_prime_UTR	22550437	22550675	.	+	.	Parent=Os08t0459600-01
Chr08	irgsp1_rep	mRNA	22553089	22554026	.	-	.	ID=Os08t0459700-00;Name=Os08t0459700-00;Locus_id=Os08g0459700;CGSNL Gene Symbol=GLP8-13;CGSNL Gene Name=GERMIN-LIKE PROTEIN 8-13;Oryzabase Gene Symbol Synonym(s)=OsGLP8-13;Oryzabase Gene Name Synonym(s)=Germin-like protein 8-13;Note=Similar to Adenosine diphosphate glucose pyrophosphatase precursor.;Transcript_evidence=CT836016 (DDBJ%2C Best hit);ORF_evidence=NP_001148746.1 (RefSeq);GO=Cellular Component: apoplast (GO:0048046),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),Germin%2C manganese binding site (IPR019780);Oryzabase=21429;TENOR=Os08t0459700-00;KEGG=Os08t0459700-00
Chr08	irgsp1_rep	five_prime_UTR	22554001	22554026	.	-	.	Parent=Os08t0459700-00
Chr08	irgsp1_rep	CDS	22553341	22554000	.	-	0	Parent=Os08t0459700-00
Chr08	irgsp1_rep	three_prime_UTR	22553089	22553340	.	-	.	Parent=Os08t0459700-00
Chr08	irgsp1_rep	mRNA	22558107	22559044	.	-	.	ID=Os08t0460000-01;Name=Os08t0460000-01;Locus_id=Os08g0460000;CGSNL Gene Symbol=GLP1;CGSNL Gene Name=GERMIN-LIKE PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsGLP1%2C GER1%2C GER5%2C GLP110%2C OsGER1%2C OsGER5%2C OsGLP8-14%2C GLP8-14;Oryzabase Gene Name Synonym(s)=Germin-like protein 8-14%2C Germin-like protein 5%2C Germin-like protein 1%2C Germin protein type 1%2C germin-like protein1;Note=Similar to Germin-like protein 1 precursor.;Transcript_evidence=AK104729 (DDBJ%2C Best hit),AK065284 (DDBJ%2C Best hit);ORF_evidence=Q6ZBZ2 (UniProt);GO=Cellular Component: apoplast (GO:0048046),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),Germin%2C manganese binding site (IPR019780);NIAS_FLcDNA=001-038-C02,J013002M08;Oryzabase=8233;Expression=AK104729;TENOR=Os08t0460000-01;KEGG=Os08t0460000-01
Chr08	irgsp1_rep	five_prime_UTR	22558944	22559044	.	-	.	Parent=Os08t0460000-01
Chr08	irgsp1_rep	CDS	22558302	22558943	.	-	0	Parent=Os08t0460000-01
Chr08	irgsp1_rep	three_prime_UTR	22558107	22558301	.	-	.	Parent=Os08t0460000-01
Chr08	irgsp1_rep	mRNA	22616852	22618558	.	-	.	ID=Os08t0460600-01;Name=Os08t0460600-01;Locus_id=Os08g0460600;CGSNL Gene Symbol=CKX11;CGSNL Gene Name=CYTOKININ  OXIDASE/DEHYDROGENASE 11;Oryzabase Gene Symbol Synonym(s)=OsCKX11;Oryzabase Gene Name Synonym(s)=cytokinin oxidase 11;Note=Similar to Cytokinin dehydrogenase 11.;Transcript_evidence=AK103510 (DDBJ%2C Best hit);ORF_evidence=Q6Z955 (UniProt);GO=Biological Process: cytokinin metabolic process (GO:0009690),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: cytokinin dehydrogenase activity (GO:0019139),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Cytokinin dehydrogenase 1%2C FAD/cytokinin binding domain (IPR015345),FAD-linked oxidase-like%2C C-terminal (IPR016164);NIAS_FLcDNA=J033131F09;Oryzabase=8401;TENOR=Os08t0460600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	22618139	22618558	.	-	.	Parent=Os08t0460600-01
Chr08	irgsp1_rep	CDS	22617833	22618138	.	-	0	Parent=Os08t0460600-01
Chr08	irgsp1_rep	three_prime_UTR	22616852	22617832	.	-	.	Parent=Os08t0460600-01
Chr08	irgsp1_rep	mRNA	22617036	22617604	.	+	.	ID=Os08t0460650-01;Name=Os08t0460650-01;Locus_id=Os08g0460650;Note=Hypothetical gene.;Transcript_evidence=AK109251 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-156-H06;Expression=AK109251;TENOR=Os08t0460650-01;KEGG=Os08t0460650-01
Chr08	irgsp1_rep	five_prime_UTR	22617036	22617037	.	+	.	Parent=Os08t0460650-01
Chr08	irgsp1_rep	CDS	22617038	22617376	.	+	0	Parent=Os08t0460650-01
Chr08	irgsp1_rep	three_prime_UTR	22617377	22617604	.	+	.	Parent=Os08t0460650-01
Chr08	irgsp1_rep	mRNA	22624404	22627704	.	-	.	ID=Os08t0460700-01;Name=Os08t0460700-01;Locus_id=Os08g0460700;Note=Leucine-rich repeat 2 containing protein.;Transcript_evidence=AK072930 (DDBJ%2C Best hit);ORF_evidence=B8BBC0 (UniProt);NIAS_FLcDNA=J023144M06;Expression=AK072930;TENOR=Os08t0460700-01;KEGG=Os08t0460700-01
Chr08	irgsp1_rep	CDS	22626895	22627704	.	-	0	Parent=Os08t0460700-01
Chr08	irgsp1_rep	CDS	22626216	22626299	.	-	0	Parent=Os08t0460700-01
Chr08	irgsp1_rep	three_prime_UTR	22626147	22626215	.	-	.	Parent=Os08t0460700-01
Chr08	irgsp1_rep	three_prime_UTR	22624404	22626058	.	-	.	Parent=Os08t0460700-01
Chr08	irgsp1_rep	mRNA	22629681	22633862	.	-	.	ID=Os08t0460800-01;Name=Os08t0460800-01;Locus_id=Os08g0460800;Oryzabase Gene Symbol Synonym(s)=OsFbox449%2C Os_F0345;Oryzabase Gene Name Synonym(s)=F-box protein 449;Note=Hypothetical conserved gene.;Transcript_evidence=AK287996 (DDBJ%2C Best hit);ORF_evidence=Q6Z954 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J075102D24;Oryzabase=17219;TENOR=Os08t0460800-01;KEGG=Os08t0460800-01
Chr08	irgsp1_rep	five_prime_UTR	22633839	22633862	.	-	.	Parent=Os08t0460800-01
Chr08	irgsp1_rep	CDS	22633017	22633838	.	-	0	Parent=Os08t0460800-01
Chr08	irgsp1_rep	CDS	22632042	22632334	.	-	0	Parent=Os08t0460800-01
Chr08	irgsp1_rep	CDS	22630142	22630526	.	-	1	Parent=Os08t0460800-01
Chr08	irgsp1_rep	three_prime_UTR	22630111	22630141	.	-	.	Parent=Os08t0460800-01
Chr08	irgsp1_rep	three_prime_UTR	22629681	22630037	.	-	.	Parent=Os08t0460800-01
Chr08	irgsp1_rep	mRNA	22634388	22637990	.	-	.	ID=Os08t0460900-00;Name=Os08t0460900-00;Locus_id=Os08g0460900;Oryzabase Gene Symbol Synonym(s)=OsFbox450%2C Os_F0185;Oryzabase Gene Name Synonym(s)=F-box protein 450;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001061979.1 (RefSeq);Oryzabase=17220;TENOR=Os08t0460900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	22637559	22637990	.	-	0	Parent=Os08t0460900-00
Chr08	irgsp1_rep	CDS	22637160	22637228	.	-	0	Parent=Os08t0460900-00
Chr08	irgsp1_rep	CDS	22636692	22636996	.	-	0	Parent=Os08t0460900-00
Chr08	irgsp1_rep	CDS	22635068	22635344	.	-	1	Parent=Os08t0460900-00
Chr08	irgsp1_rep	CDS	22634388	22634567	.	-	0	Parent=Os08t0460900-00
Chr08	irgsp1_rep	mRNA	22640713	22646119	.	-	.	ID=Os08t0461000-01;Name=Os08t0461000-01;Locus_id=Os08g0461000;Oryzabase Gene Symbol Synonym(s)=OsFbox451%2C Os_F0189;Oryzabase Gene Name Synonym(s)=F-box protein 451;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK106852 (DDBJ%2C Best hit);ORF_evidence=B8BBC1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-118-B02;Oryzabase=17221;Expression=AK106852;TENOR=Os08t0461000-01;KEGG=Os08t0461000-01
Chr08	irgsp1_rep	five_prime_UTR	22646033	22646119	.	-	.	Parent=Os08t0461000-01
Chr08	irgsp1_rep	CDS	22645210	22646032	.	-	0	Parent=Os08t0461000-01
Chr08	irgsp1_rep	CDS	22642871	22642887	.	-	2	Parent=Os08t0461000-01
Chr08	irgsp1_rep	three_prime_UTR	22642344	22642870	.	-	.	Parent=Os08t0461000-01
Chr08	irgsp1_rep	three_prime_UTR	22640713	22641032	.	-	.	Parent=Os08t0461000-01
Chr08	irgsp1_rep	mRNA	22647129	22651315	.	-	.	ID=Os08t0461100-01;Name=Os08t0461100-01;Locus_id=Os08g0461100;Note=Hypothetical conserved gene.;Transcript_evidence=AK288058 (DDBJ%2C Best hit);ORF_evidence=Q6Z226 (UniProt);NIAS_FLcDNA=J075153J09;TENOR=Os08t0461100-01;KEGG=Os08t0461100-01
Chr08	irgsp1_rep	five_prime_UTR	22651315	22651315	.	-	.	Parent=Os08t0461100-01
Chr08	irgsp1_rep	CDS	22650457	22651314	.	-	0	Parent=Os08t0461100-01
Chr08	irgsp1_rep	CDS	22649901	22650053	.	-	0	Parent=Os08t0461100-01
Chr08	irgsp1_rep	CDS	22649527	22649819	.	-	0	Parent=Os08t0461100-01
Chr08	irgsp1_rep	CDS	22649342	22649375	.	-	1	Parent=Os08t0461100-01
Chr08	irgsp1_rep	three_prime_UTR	22648151	22649341	.	-	.	Parent=Os08t0461100-01
Chr08	irgsp1_rep	three_prime_UTR	22647737	22647998	.	-	.	Parent=Os08t0461100-01
Chr08	irgsp1_rep	three_prime_UTR	22647590	22647664	.	-	.	Parent=Os08t0461100-01
Chr08	irgsp1_rep	three_prime_UTR	22647129	22647509	.	-	.	Parent=Os08t0461100-01
Chr08	irgsp1_rep	mRNA	22656289	22659552	.	-	.	ID=Os08t0461300-01;Name=Os08t0461300-01;Locus_id=Os08g0461300;Oryzabase Gene Symbol Synonym(s)=OsFbox452%2C Os_F0193;Oryzabase Gene Name Synonym(s)=F-box protein 452;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK065651 (DDBJ%2C Best hit);ORF_evidence=A3BTV7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013036L03;Oryzabase=17222;Expression=AK065651;TENOR=Os08t0461300-01;KEGG=Os08t0461300-01
Chr08	irgsp1_rep	five_prime_UTR	22659503	22659552	.	-	.	Parent=Os08t0461300-01
Chr08	irgsp1_rep	CDS	22658666	22659502	.	-	0	Parent=Os08t0461300-01
Chr08	irgsp1_rep	CDS	22658050	22658202	.	-	0	Parent=Os08t0461300-01
Chr08	irgsp1_rep	CDS	22657649	22657957	.	-	0	Parent=Os08t0461300-01
Chr08	irgsp1_rep	three_prime_UTR	22657108	22657648	.	-	.	Parent=Os08t0461300-01
Chr08	irgsp1_rep	three_prime_UTR	22656935	22657015	.	-	.	Parent=Os08t0461300-01
Chr08	irgsp1_rep	three_prime_UTR	22656289	22656846	.	-	.	Parent=Os08t0461300-01
Chr08	irgsp1_rep	mRNA	22660571	22670001	.	-	.	ID=Os08t0461400-01;Name=Os08t0461400-01;Locus_id=Os08g0461400;Note=Conserved hypothetical protein.;Transcript_evidence=AK068721 (DDBJ%2C Best hit);ORF_evidence=B9G1A1 (UniProt);NIAS_FLcDNA=J013162L18;TENOR=Os08t0461400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	22669858	22670001	.	-	0	Parent=Os08t0461400-01
Chr08	irgsp1_rep	CDS	22668905	22669780	.	-	0	Parent=Os08t0461400-01
Chr08	irgsp1_rep	CDS	22661229	22661381	.	-	0	Parent=Os08t0461400-01
Chr08	irgsp1_rep	CDS	22660899	22661141	.	-	0	Parent=Os08t0461400-01
Chr08	irgsp1_rep	three_prime_UTR	22660571	22660898	.	-	.	Parent=Os08t0461400-01
Chr08	irgsp1_rep	mRNA	22663016	22669277	.	+	.	ID=Os08t0461600-00;Name=Os08t0461600-00;Locus_id=Os08g0461600;Note=Zinc finger%2C CCHC-type domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G1A2 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Zinc finger%2C CCHC retroviral-type (IPR013084);TENOR=Os08t0461600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	22663016	22663514	.	+	0	Parent=Os08t0461600-00
Chr08	irgsp1_rep	CDS	22663595	22664880	.	+	2	Parent=Os08t0461600-00
Chr08	irgsp1_rep	CDS	22668526	22668622	.	+	0	Parent=Os08t0461600-00
Chr08	irgsp1_rep	CDS	22669120	22669277	.	+	2	Parent=Os08t0461600-00
Chr08	irgsp1_rep	mRNA	22670567	22675587	.	-	.	ID=Os08t0461700-01;Name=Os08t0461700-01;Locus_id=Os08g0461700;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK069998 (DDBJ%2C Best hit);ORF_evidence=B8BBC2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023040F09;TENOR=Os08t0461700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	22675021	22675587	.	-	0	Parent=Os08t0461700-01
Chr08	irgsp1_rep	three_prime_UTR	22674761	22675020	.	-	.	Parent=Os08t0461700-01
Chr08	irgsp1_rep	three_prime_UTR	22672434	22672586	.	-	.	Parent=Os08t0461700-01
Chr08	irgsp1_rep	three_prime_UTR	22672045	22672341	.	-	.	Parent=Os08t0461700-01
Chr08	irgsp1_rep	three_prime_UTR	22670567	22670840	.	-	.	Parent=Os08t0461700-01
Chr08	irgsp1_rep	mRNA	22675830	22679312	.	-	.	ID=Os08t0461800-01;Name=Os08t0461800-01;Locus_id=Os08g0461800;Oryzabase Gene Symbol Synonym(s)=OsFbox453%2C Os_F0339;Oryzabase Gene Name Synonym(s)=F-box protein 453;Note=Hypothetical conserved gene.;Transcript_evidence=AK098966 (DDBJ%2C Best hit),AK066516 (DDBJ%2C Best hit);ORF_evidence=B8BBC3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013087K18,J013069F06;Oryzabase=17223;Expression=AK098966;TENOR=Os08t0461800-01;KEGG=Os08t0461800-01
Chr08	irgsp1_rep	five_prime_UTR	22679188	22679312	.	-	.	Parent=Os08t0461800-01
Chr08	irgsp1_rep	CDS	22678339	22679187	.	-	0	Parent=Os08t0461800-01
Chr08	irgsp1_rep	CDS	22677697	22677849	.	-	0	Parent=Os08t0461800-01
Chr08	irgsp1_rep	CDS	22677281	22677601	.	-	0	Parent=Os08t0461800-01
Chr08	irgsp1_rep	three_prime_UTR	22675830	22677280	.	-	.	Parent=Os08t0461800-01
Chr08	irgsp1_rep	mRNA	22675914	22679145	.	-	.	ID=Os08t0461800-02;Name=Os08t0461800-02;Locus_id=Os08g0461800;Oryzabase Gene Symbol Synonym(s)=OsFbox453%2C Os_F0339;Oryzabase Gene Name Synonym(s)=F-box protein 453;Note=Similar to cDNA clone:J013069F06%2C full insert sequence.;Transcript_evidence=AK067364 (DDBJ%2C Best hit);ORF_evidence=B7ECB0 (UniProt);NIAS_FLcDNA=J013100N05;Oryzabase=17223;TENOR=Os08t0461800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	22679088	22679145	.	-	0	Parent=Os08t0461800-02
Chr08	irgsp1_rep	CDS	22678339	22678838	.	-	2	Parent=Os08t0461800-02
Chr08	irgsp1_rep	CDS	22677697	22677849	.	-	0	Parent=Os08t0461800-02
Chr08	irgsp1_rep	CDS	22677308	22677601	.	-	0	Parent=Os08t0461800-02
Chr08	irgsp1_rep	CDS	22676239	22676259	.	-	0	Parent=Os08t0461800-02
Chr08	irgsp1_rep	three_prime_UTR	22675914	22676238	.	-	.	Parent=Os08t0461800-02
Chr08	irgsp1_rep	mRNA	22682253	22687384	.	-	.	ID=Os08t0462000-01;Name=Os08t0462000-01;Locus_id=Os08g0462000;Note=Hypothetical conserved gene.;Transcript_evidence=AK288162 (DDBJ%2C Best hit);ORF_evidence=Q7XDU8 (UniProt);NIAS_FLcDNA=J090001P20;TENOR=Os08t0462000-01;KEGG=Os08t0462000-01
Chr08	irgsp1_rep	five_prime_UTR	22684493	22687384	.	-	.	Parent=Os08t0462000-01
Chr08	irgsp1_rep	CDS	22684241	22684492	.	-	0	Parent=Os08t0462000-01
Chr08	irgsp1_rep	three_prime_UTR	22682253	22684240	.	-	.	Parent=Os08t0462000-01
Chr08	irgsp1_rep	mRNA	22692351	22694330	.	-	.	ID=Os08t0462300-01;Name=Os08t0462300-01;Locus_id=Os08g0462300;Oryzabase Gene Symbol Synonym(s)=OsFbox455%2C Os_F0173;Oryzabase Gene Name Synonym(s)=F-box protein 455;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK064101 (DDBJ%2C Best hit);ORF_evidence=A2YVZ1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-101-A02;Oryzabase=17225;Expression=AK064101;TENOR=Os08t0462300-01;KEGG=Os08t0462300-01
Chr08	irgsp1_rep	five_prime_UTR	22694284	22694330	.	-	.	Parent=Os08t0462300-01
Chr08	irgsp1_rep	CDS	22693465	22694283	.	-	0	Parent=Os08t0462300-01
Chr08	irgsp1_rep	CDS	22693064	22693213	.	-	0	Parent=Os08t0462300-01
Chr08	irgsp1_rep	CDS	22692589	22692876	.	-	0	Parent=Os08t0462300-01
Chr08	irgsp1_rep	three_prime_UTR	22692351	22692588	.	-	.	Parent=Os08t0462300-01
Chr08	irgsp1_rep	mRNA	22702058	22707548	.	+	.	ID=Os08t0462700-01;Name=Os08t0462700-01;Locus_id=Os08g0462700;RAP-DB Gene Symbol Synonym(s)=OsBRXL1%2C OsBRXL4;RAP-DB Gene Name Synonym(s)=Brevis Radix Like 1%2C Brevis Radix Like 4;CGSNL Gene Symbol=BRXL1;CGSNL Gene Name=BREVIS RADIX-LIKE 1;Oryzabase Gene Symbol Synonym(s)=OsBRXL1;Oryzabase Gene Name Synonym(s)=Brevis radix-like 1%2C BRX-like 1;Note=A member of the plant specific Brevis Radix (BRX) family%2C Regulation of shoot gravitropism and rice tiller angle;Transcript_evidence=AK122163,AK103661;ORF_evidence=Q6YUB8;InterPro=Transcription factor  BREVIS RADIX%2C N-terminal domain (IPR027988),Brevis radix (BRX) domain (IPR013591);NIAS_FLcDNA=J033147H01,J033135H11;Manual Curation=March 19%2C 2020;Literature_PMID=31200078,16514016;Oryzabase=8927;Expression=AK122163;TENOR=Os08t0462700-01;KEGG=Os08t0462700-01;Subcellular location=plasma membrane (GO:0005886), cytoplasm (GO:0005737)
Chr08	irgsp1_rep	five_prime_UTR	22702058	22702157	.	+	.	Parent=Os08t0462700-01
Chr08	irgsp1_rep	CDS	22702158	22702313	.	+	0	Parent=Os08t0462700-01
Chr08	irgsp1_rep	CDS	22702640	22703022	.	+	0	Parent=Os08t0462700-01
Chr08	irgsp1_rep	CDS	22705878	22706010	.	+	1	Parent=Os08t0462700-01
Chr08	irgsp1_rep	CDS	22706111	22706553	.	+	0	Parent=Os08t0462700-01
Chr08	irgsp1_rep	CDS	22707027	22707105	.	+	1	Parent=Os08t0462700-01
Chr08	irgsp1_rep	three_prime_UTR	22707106	22707548	.	+	.	Parent=Os08t0462700-01
Chr08	irgsp1_rep	mRNA	22711339	22712603	.	-	.	ID=Os08t0462800-01;Name=Os08t0462800-01;Locus_id=Os08g0462800;Note=Protein of unknown function DUF716 family protein.;Transcript_evidence=AK108845 (DDBJ%2C Best hit);ORF_evidence=A2YVZ3 (UniProt);InterPro=Protein of unknown function DUF716%2C TMEM45 (IPR006904);NIAS_FLcDNA=002-152-A01;Expression=AK108845;TENOR=Os08t0462800-01;KEGG=Os08t0462800-01
Chr08	irgsp1_rep	five_prime_UTR	22712571	22712603	.	-	.	Parent=Os08t0462800-01
Chr08	irgsp1_rep	CDS	22711623	22712570	.	-	0	Parent=Os08t0462800-01
Chr08	irgsp1_rep	three_prime_UTR	22711339	22711622	.	-	.	Parent=Os08t0462800-01
Chr08	irgsp1_rep	mRNA	22715246	22716410	.	-	.	ID=Os08t0462900-01;Name=Os08t0462900-01;Locus_id=Os08g0462900;Note=Protein of unknown function DUF716 family protein.;Transcript_evidence=AK243654 (DDBJ%2C Best hit);ORF_evidence=NP_001061988.1 (RefSeq);InterPro=Protein of unknown function DUF716%2C TMEM45 (IPR006904);NIAS_FLcDNA=J100088K10;TENOR=Os08t0462900-01;KEGG=Os08t0462900-01
Chr08	irgsp1_rep	five_prime_UTR	22716335	22716410	.	-	.	Parent=Os08t0462900-01
Chr08	irgsp1_rep	CDS	22715408	22716334	.	-	0	Parent=Os08t0462900-01
Chr08	irgsp1_rep	three_prime_UTR	22715246	22715407	.	-	.	Parent=Os08t0462900-01
Chr08	irgsp1_rep	mRNA	22721156	22721757	.	+	.	ID=Os08t0463100-01;Name=Os08t0463100-01;Locus_id=Os08g0463100;Note=Conserved hypothetical protein.;Transcript_evidence=AK063043 (DDBJ%2C Best hit);ORF_evidence=A3C598 (UniProt);NIAS_FLcDNA=001-110-D08;TENOR=Os08t0463100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	22721156	22721662	.	+	0	Parent=Os08t0463100-01
Chr08	irgsp1_rep	three_prime_UTR	22721663	22721757	.	+	.	Parent=Os08t0463100-01
Chr08	irgsp1_rep	mRNA	22754803	22756038	.	+	.	ID=Os08t0463500-01;Name=Os08t0463500-01;Locus_id=Os08g0463500;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK058457 (DDBJ%2C Best hit);ORF_evidence=A2YVZ8 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087);NIAS_FLcDNA=001-015-H09;Expression=AK058457;TENOR=Os08t0463500-01;KEGG=Os08t0463500-01
Chr08	irgsp1_rep	five_prime_UTR	22754803	22754982	.	+	.	Parent=Os08t0463500-01
Chr08	irgsp1_rep	CDS	22754983	22755885	.	+	0	Parent=Os08t0463500-01
Chr08	irgsp1_rep	three_prime_UTR	22755886	22756038	.	+	.	Parent=Os08t0463500-01
Chr08	irgsp1_rep	mRNA	22772976	22775044	.	+	.	ID=Os08t0463900-01;Name=Os08t0463900-01;Locus_id=Os08g0463900;Note=Heat shock protein DnaJ%2C cysteine-rich region domain containing protein.;Transcript_evidence=AK120178 (DDBJ%2C Best hit);ORF_evidence=NP_181032.1 (RefSeq);GO=Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C cysteine-rich domain (IPR001305);NIAS_FLcDNA=J013033H06;Expression=AK120178;TENOR=Os08t0463900-01;KEGG=Os08t0463900-01
Chr08	irgsp1_rep	five_prime_UTR	22772976	22773040	.	+	.	Parent=Os08t0463900-01
Chr08	irgsp1_rep	CDS	22773041	22773131	.	+	0	Parent=Os08t0463900-01
Chr08	irgsp1_rep	CDS	22773371	22773450	.	+	2	Parent=Os08t0463900-01
Chr08	irgsp1_rep	CDS	22774102	22774270	.	+	0	Parent=Os08t0463900-01
Chr08	irgsp1_rep	CDS	22774547	22774639	.	+	2	Parent=Os08t0463900-01
Chr08	irgsp1_rep	CDS	22774759	22774889	.	+	2	Parent=Os08t0463900-01
Chr08	irgsp1_rep	three_prime_UTR	22774890	22775044	.	+	.	Parent=Os08t0463900-01
Chr08	irgsp1_rep	mRNA	22777141	22781266	.	-	.	ID=Os08t0464000-01;Name=Os08t0464000-01;Locus_id=Os08g0464000;Note=Activator of Hsp90 ATPase homologue 1-like family protein.;Transcript_evidence=AK059195 (DDBJ%2C Best hit);ORF_evidence=B6U7Y1 (UniProt);GO=Biological Process: response to stress (GO:0006950),Cellular Component: cytoplasm (GO:0005737),Molecular Function: ATPase activator activity (GO:0001671),Molecular Function: chaperone binding (GO:0051087);InterPro=Activator of Hsp90 ATPase homologue 1-like (IPR013538),Activator of Hsp90 ATPase%2C N-terminal (IPR015310),START-like domain (IPR023393);NIAS_FLcDNA=001-024-A01;Expression=AK059195;TENOR=Os08t0464000-01;KEGG=Os08t0464000-01
Chr08	irgsp1_rep	five_prime_UTR	22781089	22781266	.	-	.	Parent=Os08t0464000-01
Chr08	irgsp1_rep	CDS	22780192	22781088	.	-	0	Parent=Os08t0464000-01
Chr08	irgsp1_rep	CDS	22777542	22777621	.	-	0	Parent=Os08t0464000-01
Chr08	irgsp1_rep	CDS	22777354	22777447	.	-	1	Parent=Os08t0464000-01
Chr08	irgsp1_rep	three_prime_UTR	22777141	22777353	.	-	.	Parent=Os08t0464000-01
Chr08	irgsp1_rep	mRNA	22777198	22781156	.	-	.	ID=Os08t0464000-02;Name=Os08t0464000-02;Locus_id=Os08g0464000;Note=Activator of Hsp90 ATPase homologue 1-like family protein.;Transcript_evidence=AK102612 (DDBJ%2C Best hit);ORF_evidence=B6U7Y1 (UniProt);GO=Biological Process: response to stress (GO:0006950),Cellular Component: cytoplasm (GO:0005737),Molecular Function: ATPase activator activity (GO:0001671),Molecular Function: chaperone binding (GO:0051087);InterPro=Activator of Hsp90 ATPase homologue 1-like (IPR013538),Activator of Hsp90 ATPase%2C N-terminal (IPR015310),START-like domain (IPR023393);NIAS_FLcDNA=J033099D06;Expression=AK102612;TENOR=Os08t0464000-02;KEGG=Os08t0464000-02
Chr08	irgsp1_rep	five_prime_UTR	22781089	22781156	.	-	.	Parent=Os08t0464000-02
Chr08	irgsp1_rep	CDS	22780192	22781088	.	-	0	Parent=Os08t0464000-02
Chr08	irgsp1_rep	CDS	22777542	22777621	.	-	0	Parent=Os08t0464000-02
Chr08	irgsp1_rep	CDS	22777354	22777447	.	-	1	Parent=Os08t0464000-02
Chr08	irgsp1_rep	three_prime_UTR	22777198	22777353	.	-	.	Parent=Os08t0464000-02
Chr08	irgsp1_rep	mRNA	22808929	22814436	.	+	.	ID=Os08t0464400-01;Name=Os08t0464400-01;Locus_id=Os08g0464400;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK073370 (DDBJ%2C Best hit);ORF_evidence=A2YW02 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J033025K23;Expression=AK073370;TENOR=Os08t0464400-01;KEGG=Os08t0464400-01 (EC:6.3.2.19)
Chr08	irgsp1_rep	five_prime_UTR	22808929	22809066	.	+	.	Parent=Os08t0464400-01
Chr08	irgsp1_rep	CDS	22809067	22809702	.	+	0	Parent=Os08t0464400-01
Chr08	irgsp1_rep	three_prime_UTR	22809703	22809722	.	+	.	Parent=Os08t0464400-01
Chr08	irgsp1_rep	three_prime_UTR	22814055	22814436	.	+	.	Parent=Os08t0464400-01
Chr08	irgsp1_rep	mRNA	22829415	22831125	.	+	.	ID=Os08t0464950-01;Name=Os08t0464950-01;Locus_id=Os08g0464950;Note=Hypothetical gene.;Transcript_evidence=AK241196 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065121H01;TENOR=Os08t0464950-01;KEGG=Os08t0464950-01
Chr08	irgsp1_rep	five_prime_UTR	22829415	22829479	.	+	.	Parent=Os08t0464950-01
Chr08	irgsp1_rep	CDS	22829480	22829893	.	+	0	Parent=Os08t0464950-01
Chr08	irgsp1_rep	three_prime_UTR	22829894	22830022	.	+	.	Parent=Os08t0464950-01
Chr08	irgsp1_rep	three_prime_UTR	22830116	22830195	.	+	.	Parent=Os08t0464950-01
Chr08	irgsp1_rep	three_prime_UTR	22830320	22830669	.	+	.	Parent=Os08t0464950-01
Chr08	irgsp1_rep	three_prime_UTR	22830763	22831125	.	+	.	Parent=Os08t0464950-01
Chr08	irgsp1_rep	mRNA	22829455	22831213	.	-	.	ID=Os08t0465000-00;Name=Os08t0465000-00;Locus_id=Os08g0465000;CGSNL Gene Symbol=HOX27;CGSNL Gene Name=HOMEOBOX GENE 27;Oryzabase Gene Symbol Synonym(s)=Oshox27%2C OsHox27;Oryzabase Gene Name Synonym(s)=rice homeobox gene 27%2C Homeobox-leucine zipper protein HOX27%2C Homeodomain transcription factor HOX27%2C HD-ZIP protein HOX27;Note=Hypothetical conserved gene.;Transcript_evidence=CT835984 (DDBJ%2C Best hit);ORF_evidence=Q6YPD0 (UniProt);Oryzabase=8464;TENOR=Os08t0465000-00;KEGG=Os08t0465000-00
Chr08	irgsp1_rep	five_prime_UTR	22831007	22831213	.	-	.	Parent=Os08t0465000-00
Chr08	irgsp1_rep	CDS	22830935	22831006	.	-	0	Parent=Os08t0465000-00
Chr08	irgsp1_rep	CDS	22829632	22829829	.	-	0	Parent=Os08t0465000-00
Chr08	irgsp1_rep	three_prime_UTR	22829455	22829631	.	-	.	Parent=Os08t0465000-00
Chr08	irgsp1_rep	mRNA	22849569	22851030	.	-	.	ID=Os08t0465300-01;Name=Os08t0465300-01;Locus_id=Os08g0465300;Note=Similar to Sodium/hydrogen exchanger family protein.;Transcript_evidence=AK108076 (DDBJ%2C Best hit);ORF_evidence=Q2QYR3 (UniProt);NIAS_FLcDNA=002-138-D12;TENOR=Os08t0465300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	22850845	22851030	.	-	.	Parent=Os08t0465300-01
Chr08	irgsp1_rep	CDS	22850599	22850844	.	-	0	Parent=Os08t0465300-01
Chr08	irgsp1_rep	three_prime_UTR	22849569	22850598	.	-	.	Parent=Os08t0465300-01
Chr08	irgsp1_rep	mRNA	22849771	22851227	.	+	.	ID=Os08t0465400-01;Name=Os08t0465400-01;Locus_id=Os08g0465400;Note=Hypothetical protein.;Transcript_evidence=AK068332 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013136J07;Expression=AK068332;TENOR=Os08t0465400-01;KEGG=Os08t0465400-01
Chr08	irgsp1_rep	five_prime_UTR	22849771	22850677	.	+	.	Parent=Os08t0465400-01
Chr08	irgsp1_rep	CDS	22850678	22851007	.	+	0	Parent=Os08t0465400-01
Chr08	irgsp1_rep	three_prime_UTR	22851008	22851227	.	+	.	Parent=Os08t0465400-01
Chr08	irgsp1_rep	mRNA	22876101	22877792	.	+	.	ID=Os08t0465700-01;Name=Os08t0465700-01;Locus_id=Os08g0465700;CGSNL Gene Symbol=CYP76M1;CGSNL Gene Name=P-450 76M1;Oryzabase Gene Symbol Synonym(s)=CYP76M1;Oryzabase Gene Name Synonym(s)=CytoChrome P450 76M1;Note=CytoChrome P450 family protein.;Transcript_evidence=AK072861 (DDBJ%2C Best hit);ORF_evidence=Q8S3F6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J023141H24;Oryzabase=12420;Expression=AK072861;TENOR=Os08t0465700-01;KEGG=Os08t0465700-01
Chr08	irgsp1_rep	five_prime_UTR	22876101	22876125	.	+	.	Parent=Os08t0465700-01
Chr08	irgsp1_rep	CDS	22876126	22877628	.	+	0	Parent=Os08t0465700-01
Chr08	irgsp1_rep	three_prime_UTR	22877629	22877792	.	+	.	Parent=Os08t0465700-01
Chr08	irgsp1_rep	mRNA	22878735	22882730	.	-	.	ID=Os08t0465800-01;Name=Os08t0465800-01;Locus_id=Os08g0465800;CGSNL Gene Symbol=GAD1;CGSNL Gene Name=GLUTAMATE DECARBOXYLASE 1;Oryzabase Gene Symbol Synonym(s)=OsGAD1%2C GDC;Oryzabase Gene Name Synonym(s)=glutamate decarboxylase 1;Note=Similar to Glutamate decarboxylase.;Transcript_evidence=AK121088 (DDBJ%2C Best hit);ORF_evidence=B9TST3 (UniProt);GO=Biological Process: glutamate metabolic process (GO:0006536),Biological Process: carboxylic acid metabolic process (GO:0019752),Molecular Function: catalytic activity (GO:0003824),Molecular Function: glutamate decarboxylase activity (GO:0004351),Molecular Function: carboxy-lyase activity (GO:0016831),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent decarboxylase (IPR002129),Glutamate decarboxylase (IPR010107),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J023065G12;Oryzabase=14091;Expression=AK121088;TENOR=Os08t0465800-01;KEGG=Os08t0465800-01 (EC:4.1.1.15)
Chr08	irgsp1_rep	five_prime_UTR	22882509	22882730	.	-	.	Parent=Os08t0465800-01
Chr08	irgsp1_rep	CDS	22882423	22882508	.	-	0	Parent=Os08t0465800-01
Chr08	irgsp1_rep	CDS	22882117	22882321	.	-	1	Parent=Os08t0465800-01
Chr08	irgsp1_rep	CDS	22880708	22880908	.	-	0	Parent=Os08t0465800-01
Chr08	irgsp1_rep	CDS	22880401	22880615	.	-	0	Parent=Os08t0465800-01
Chr08	irgsp1_rep	CDS	22879852	22880105	.	-	1	Parent=Os08t0465800-01
Chr08	irgsp1_rep	CDS	22879715	22879767	.	-	2	Parent=Os08t0465800-01
Chr08	irgsp1_rep	CDS	22878994	22879473	.	-	0	Parent=Os08t0465800-01
Chr08	irgsp1_rep	three_prime_UTR	22878735	22878993	.	-	.	Parent=Os08t0465800-01
Chr08	irgsp1_rep	mRNA	22878863	22882615	.	-	.	ID=Os08t0465800-02;Name=Os08t0465800-02;Locus_id=Os08g0465800;CGSNL Gene Symbol=GAD1;CGSNL Gene Name=GLUTAMATE DECARBOXYLASE 1;Oryzabase Gene Symbol Synonym(s)=OsGAD1%2C GDC;Oryzabase Gene Name Synonym(s)=glutamate decarboxylase 1;Note=Similar to Glutamate decarboxylase.;Transcript_evidence=AK061977 (DDBJ%2C Best hit);ORF_evidence=B9TST3 (UniProt);GO=Biological Process: glutamate metabolic process (GO:0006536),Biological Process: carboxylic acid metabolic process (GO:0019752),Molecular Function: catalytic activity (GO:0003824),Molecular Function: glutamate decarboxylase activity (GO:0004351),Molecular Function: carboxy-lyase activity (GO:0016831),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent decarboxylase (IPR002129),Glutamate decarboxylase (IPR010107),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=001-043-A04;Oryzabase=14091;Expression=AK061977;TENOR=Os08t0465800-02;KEGG=Os08t0465800-02 (EC:4.1.1.15)
Chr08	irgsp1_rep	five_prime_UTR	22882509	22882615	.	-	.	Parent=Os08t0465800-02
Chr08	irgsp1_rep	CDS	22882423	22882508	.	-	0	Parent=Os08t0465800-02
Chr08	irgsp1_rep	CDS	22882117	22882321	.	-	1	Parent=Os08t0465800-02
Chr08	irgsp1_rep	CDS	22880708	22880908	.	-	0	Parent=Os08t0465800-02
Chr08	irgsp1_rep	CDS	22880401	22880615	.	-	0	Parent=Os08t0465800-02
Chr08	irgsp1_rep	CDS	22879852	22880105	.	-	1	Parent=Os08t0465800-02
Chr08	irgsp1_rep	CDS	22879715	22879767	.	-	2	Parent=Os08t0465800-02
Chr08	irgsp1_rep	CDS	22878994	22879473	.	-	0	Parent=Os08t0465800-02
Chr08	irgsp1_rep	three_prime_UTR	22878863	22878993	.	-	.	Parent=Os08t0465800-02
Chr08	irgsp1_rep	mRNA	22887607	22893050	.	+	.	ID=Os08t0466050-01;Name=Os08t0466050-01;Locus_id=Os08g0466050;Note=Similar to DNA polymerase epsilon subunit 2.;Transcript_evidence=AK287422 (DDBJ%2C Best hit);ORF_evidence=NP_001147081.1 (RefSeq);NIAS_FLcDNA=J043004E23;TENOR=Os08t0466050-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	22887607	22887811	.	+	.	Parent=Os08t0466050-01
Chr08	irgsp1_rep	five_prime_UTR	22887915	22887928	.	+	.	Parent=Os08t0466050-01
Chr08	irgsp1_rep	CDS	22887929	22888090	.	+	0	Parent=Os08t0466050-01
Chr08	irgsp1_rep	CDS	22888557	22888628	.	+	0	Parent=Os08t0466050-01
Chr08	irgsp1_rep	three_prime_UTR	22888629	22888669	.	+	.	Parent=Os08t0466050-01
Chr08	irgsp1_rep	three_prime_UTR	22888829	22888982	.	+	.	Parent=Os08t0466050-01
Chr08	irgsp1_rep	three_prime_UTR	22889065	22889196	.	+	.	Parent=Os08t0466050-01
Chr08	irgsp1_rep	three_prime_UTR	22889417	22889494	.	+	.	Parent=Os08t0466050-01
Chr08	irgsp1_rep	three_prime_UTR	22889580	22889684	.	+	.	Parent=Os08t0466050-01
Chr08	irgsp1_rep	three_prime_UTR	22889770	22890646	.	+	.	Parent=Os08t0466050-01
Chr08	irgsp1_rep	three_prime_UTR	22891517	22891631	.	+	.	Parent=Os08t0466050-01
Chr08	irgsp1_rep	three_prime_UTR	22891717	22891827	.	+	.	Parent=Os08t0466050-01
Chr08	irgsp1_rep	three_prime_UTR	22892030	22893050	.	+	.	Parent=Os08t0466050-01
Chr08	irgsp1_rep	mRNA	22904756	22908287	.	+	.	ID=Os08t0466200-01;Name=Os08t0466200-01;Locus_id=Os08g0466200;CGSNL Gene Symbol=HAK4;CGSNL Gene Name=HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 4;Oryzabase Gene Symbol Synonym(s)=OsHAK4;Oryzabase Gene Name Synonym(s)=High-affinity Potassium(K+) Transporter 4%2C Probable potassium transporter 4;Note=Similar to KUP-related potassium transporter.;Transcript_evidence=AK119564 (DDBJ%2C Best hit),AK071698 (DDBJ%2C Best hit);ORF_evidence=Q1T762 (UniProt);GO=Biological Process: potassium ion transmembrane transport (GO:0071805),Cellular Component: membrane (GO:0016020),Molecular Function: potassium ion transmembrane transporter activity (GO:0015079);InterPro=K+ potassium transporter (IPR003855);NIAS_FLcDNA=002-117-A03,J023108L13;Oryzabase=8658;TENOR=Os08t0466200-01
Chr08	irgsp1_rep	five_prime_UTR	22904756	22904792	.	+	.	Parent=Os08t0466200-01
Chr08	irgsp1_rep	CDS	22904793	22904855	.	+	0	Parent=Os08t0466200-01
Chr08	irgsp1_rep	CDS	22905532	22905754	.	+	0	Parent=Os08t0466200-01
Chr08	irgsp1_rep	CDS	22905840	22906133	.	+	2	Parent=Os08t0466200-01
Chr08	irgsp1_rep	CDS	22906237	22906494	.	+	2	Parent=Os08t0466200-01
Chr08	irgsp1_rep	CDS	22906584	22907839	.	+	2	Parent=Os08t0466200-01
Chr08	irgsp1_rep	three_prime_UTR	22907840	22908287	.	+	.	Parent=Os08t0466200-01
Chr08	irgsp1_rep	mRNA	22922789	22925139	.	-	.	ID=Os08t0466600-00;Name=Os08t0466600-00;Locus_id=Os08g0466600;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os08t0466600-00
Chr08	irgsp1_rep	CDS	22924752	22925139	.	-	0	Parent=Os08t0466600-00
Chr08	irgsp1_rep	CDS	22922789	22922913	.	-	2	Parent=Os08t0466600-00
Chr08	irgsp1_rep	mRNA	22927605	22928009	.	+	.	ID=Os08t0466950-00;Name=Os08t0466950-00;Locus_id=Os08g0466950;Note=Hypothetical conserved gene.;Transcript_evidence=EU974731 (DDBJ);ORF_evidence=B6UBW6 (UniProt);TENOR=Os08t0466950-00;KEGG=Os08t0466950-00
Chr08	irgsp1_rep	five_prime_UTR	22927605	22927619	.	+	.	Parent=Os08t0466950-00
Chr08	irgsp1_rep	CDS	22927620	22928009	.	+	0	Parent=Os08t0466950-00
Chr08	irgsp1_rep	mRNA	22971625	22974903	.	+	.	ID=Os08t0467100-01;Name=Os08t0467100-01;Locus_id=Os08g0467100;CGSNL Gene Symbol=IDD12;CGSNL Gene Name=INDETERMINATE DOMAIN 12;Oryzabase Gene Symbol Synonym(s)=OsIDD12%2C DLN211%2C OsDLN211;Oryzabase Gene Name Synonym(s)=indeterminate domain 12%2C DLN repressor 211%2C DLN motif protein 211;Note=Zinc finger%2C C2H2 domain containing protein.;Transcript_evidence=AK119595 (DDBJ%2C Best hit);ORF_evidence=Q6YSA1 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=002-117-D09;Oryzabase=13159;TENOR=Os08t0467100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	22971625	22972057	.	+	.	Parent=Os08t0467100-01
Chr08	irgsp1_rep	CDS	22972058	22972193	.	+	0	Parent=Os08t0467100-01
Chr08	irgsp1_rep	CDS	22972332	22972734	.	+	2	Parent=Os08t0467100-01
Chr08	irgsp1_rep	CDS	22973592	22974654	.	+	1	Parent=Os08t0467100-01
Chr08	irgsp1_rep	three_prime_UTR	22974655	22974903	.	+	.	Parent=Os08t0467100-01
Chr08	irgsp1_rep	mRNA	22971813	22974903	.	+	.	ID=Os08t0467100-02;Name=Os08t0467100-02;Locus_id=Os08g0467100;CGSNL Gene Symbol=IDD12;CGSNL Gene Name=INDETERMINATE DOMAIN 12;Oryzabase Gene Symbol Synonym(s)=OsIDD12%2C DLN211%2C OsDLN211;Oryzabase Gene Name Synonym(s)=indeterminate domain 12%2C DLN repressor 211%2C DLN motif protein 211;Note=Zinc finger%2C C2H2 domain containing protein.;Transcript_evidence=AK106796 (DDBJ%2C Best hit);ORF_evidence=B9G1C0 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=002-116-B04;Oryzabase=13159;TENOR=Os08t0467100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	22971813	22972057	.	+	.	Parent=Os08t0467100-02
Chr08	irgsp1_rep	CDS	22972058	22972193	.	+	0	Parent=Os08t0467100-02
Chr08	irgsp1_rep	CDS	22972332	22972734	.	+	2	Parent=Os08t0467100-02
Chr08	irgsp1_rep	CDS	22973592	22974654	.	+	1	Parent=Os08t0467100-02
Chr08	irgsp1_rep	three_prime_UTR	22974655	22974903	.	+	.	Parent=Os08t0467100-02
Chr08	irgsp1_rep	mRNA	22972329	22972610	.	-	.	ID=Os08t0467201-00;Name=Os08t0467201-00;Locus_id=Os08g0467201;Note=Hypothetical protein.;Transcript_evidence=BT086922 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0467201-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	22972610	22972610	.	-	.	Parent=Os08t0467201-00
Chr08	irgsp1_rep	CDS	22972329	22972609	.	-	0	Parent=Os08t0467201-00
Chr08	irgsp1_rep	mRNA	22983231	22984794	.	+	.	ID=Os08t0467300-01;Name=Os08t0467300-01;Locus_id=Os08g0467300;Note=Clathrin adaptor%2C phosphoinositide-binding%2C GAT-like domain containing protein.;Transcript_evidence=AK105541 (DDBJ%2C Best hit);ORF_evidence=NP_001151341.1 (RefSeq);GO=Biological Process: clathrin coat assembly (GO:0048268),Cellular Component: clathrin coat (GO:0030118),Molecular Function: phospholipid binding (GO:0005543),Molecular Function: 1-phosphatidylinositol binding (GO:0005545),Molecular Function: clathrin binding (GO:0030276);InterPro=ENTH/VHS (IPR008942),ANTH (IPR011417),Epsin-like%2C N-terminal (IPR013809),Clathrin adaptor%2C phosphoinositide-binding%2C GAT-like (IPR014712);NIAS_FLcDNA=001-127-H10;Expression=AK105541;TENOR=Os08t0467300-01;KEGG=Os08t0467300-01
Chr08	irgsp1_rep	five_prime_UTR	22983231	22983370	.	+	.	Parent=Os08t0467300-01
Chr08	irgsp1_rep	CDS	22983371	22984561	.	+	0	Parent=Os08t0467300-01
Chr08	irgsp1_rep	three_prime_UTR	22984562	22984794	.	+	.	Parent=Os08t0467300-01
Chr08	irgsp1_rep	mRNA	22987096	22994967	.	-	.	ID=Os08t0467400-01;Name=Os08t0467400-01;Locus_id=Os08g0467400;Note=Zinc/iron permease family protein.;Transcript_evidence=AK070501 (DDBJ%2C Best hit);ORF_evidence=XP_002311552.1 (RefSeq);GO=Biological Process: metal ion transport (GO:0030001),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: metal ion transmembrane transporter activity (GO:0046873);InterPro=Zinc/iron permease (IPR003689);NIAS_FLcDNA=J023054A11;Expression=AK070501;TENOR=Os08t0467400-01;KEGG=Os08t0467400-01
Chr08	irgsp1_rep	five_prime_UTR	22994843	22994967	.	-	.	Parent=Os08t0467400-01
Chr08	irgsp1_rep	CDS	22994458	22994842	.	-	0	Parent=Os08t0467400-01
Chr08	irgsp1_rep	CDS	22994263	22994346	.	-	2	Parent=Os08t0467400-01
Chr08	irgsp1_rep	CDS	22994118	22994167	.	-	2	Parent=Os08t0467400-01
Chr08	irgsp1_rep	CDS	22993437	22993488	.	-	0	Parent=Os08t0467400-01
Chr08	irgsp1_rep	CDS	22992579	22992683	.	-	2	Parent=Os08t0467400-01
Chr08	irgsp1_rep	CDS	22992024	22992283	.	-	2	Parent=Os08t0467400-01
Chr08	irgsp1_rep	CDS	22990503	22990655	.	-	0	Parent=Os08t0467400-01
Chr08	irgsp1_rep	CDS	22990267	22990374	.	-	0	Parent=Os08t0467400-01
Chr08	irgsp1_rep	CDS	22989293	22989394	.	-	0	Parent=Os08t0467400-01
Chr08	irgsp1_rep	CDS	22989171	22989215	.	-	0	Parent=Os08t0467400-01
Chr08	irgsp1_rep	CDS	22988357	22988509	.	-	0	Parent=Os08t0467400-01
Chr08	irgsp1_rep	three_prime_UTR	22988305	22988356	.	-	.	Parent=Os08t0467400-01
Chr08	irgsp1_rep	three_prime_UTR	22987996	22988052	.	-	.	Parent=Os08t0467400-01
Chr08	irgsp1_rep	three_prime_UTR	22987096	22987917	.	-	.	Parent=Os08t0467400-01
Chr08	irgsp1_rep	mRNA	22987756	22994967	.	-	.	ID=Os08t0467400-02;Name=Os08t0467400-02;Locus_id=Os08g0467400;Note=Zinc/iron permease family protein.;Transcript_evidence=AK102279 (DDBJ%2C Best hit);ORF_evidence=XP_002311552.1 (RefSeq);GO=Biological Process: metal ion transport (GO:0030001),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: metal ion transmembrane transporter activity (GO:0046873);InterPro=Zinc/iron permease (IPR003689);NIAS_FLcDNA=J033089E10;Expression=AK102279;TENOR=Os08t0467400-02;KEGG=Os08t0467400-02
Chr08	irgsp1_rep	five_prime_UTR	22994843	22994967	.	-	.	Parent=Os08t0467400-02
Chr08	irgsp1_rep	CDS	22994458	22994842	.	-	0	Parent=Os08t0467400-02
Chr08	irgsp1_rep	CDS	22994263	22994346	.	-	2	Parent=Os08t0467400-02
Chr08	irgsp1_rep	CDS	22994118	22994167	.	-	2	Parent=Os08t0467400-02
Chr08	irgsp1_rep	CDS	22993437	22993488	.	-	0	Parent=Os08t0467400-02
Chr08	irgsp1_rep	CDS	22992579	22992683	.	-	2	Parent=Os08t0467400-02
Chr08	irgsp1_rep	CDS	22992024	22992283	.	-	2	Parent=Os08t0467400-02
Chr08	irgsp1_rep	CDS	22990503	22990655	.	-	0	Parent=Os08t0467400-02
Chr08	irgsp1_rep	CDS	22990267	22990374	.	-	0	Parent=Os08t0467400-02
Chr08	irgsp1_rep	CDS	22989293	22989394	.	-	0	Parent=Os08t0467400-02
Chr08	irgsp1_rep	CDS	22989171	22989215	.	-	0	Parent=Os08t0467400-02
Chr08	irgsp1_rep	CDS	22988357	22988509	.	-	0	Parent=Os08t0467400-02
Chr08	irgsp1_rep	three_prime_UTR	22988305	22988356	.	-	.	Parent=Os08t0467400-02
Chr08	irgsp1_rep	three_prime_UTR	22987756	22988052	.	-	.	Parent=Os08t0467400-02
Chr08	irgsp1_rep	mRNA	22988190	22994965	.	-	.	ID=Os08t0467400-03;Name=Os08t0467400-03;Locus_id=Os08g0467400;Note=Zinc/iron permease family protein.;Transcript_evidence=AK105607 (DDBJ%2C Best hit);ORF_evidence=XP_002311552.1 (RefSeq);GO=Biological Process: metal ion transport (GO:0030001),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: metal ion transmembrane transporter activity (GO:0046873);InterPro=Zinc/iron permease (IPR003689);NIAS_FLcDNA=001-200-B01;Expression=AK105607;TENOR=Os08t0467400-03;KEGG=Os08t0467400-03
Chr08	irgsp1_rep	five_prime_UTR	22994843	22994965	.	-	.	Parent=Os08t0467400-03
Chr08	irgsp1_rep	CDS	22994458	22994842	.	-	0	Parent=Os08t0467400-03
Chr08	irgsp1_rep	CDS	22994263	22994346	.	-	2	Parent=Os08t0467400-03
Chr08	irgsp1_rep	CDS	22994118	22994167	.	-	2	Parent=Os08t0467400-03
Chr08	irgsp1_rep	CDS	22993437	22993488	.	-	0	Parent=Os08t0467400-03
Chr08	irgsp1_rep	CDS	22992579	22992683	.	-	2	Parent=Os08t0467400-03
Chr08	irgsp1_rep	CDS	22992024	22992283	.	-	2	Parent=Os08t0467400-03
Chr08	irgsp1_rep	CDS	22990503	22990655	.	-	0	Parent=Os08t0467400-03
Chr08	irgsp1_rep	CDS	22990267	22990374	.	-	0	Parent=Os08t0467400-03
Chr08	irgsp1_rep	CDS	22989293	22989394	.	-	0	Parent=Os08t0467400-03
Chr08	irgsp1_rep	CDS	22989171	22989215	.	-	0	Parent=Os08t0467400-03
Chr08	irgsp1_rep	CDS	22988357	22988509	.	-	0	Parent=Os08t0467400-03
Chr08	irgsp1_rep	three_prime_UTR	22988190	22988356	.	-	.	Parent=Os08t0467400-03
Chr08	irgsp1_rep	mRNA	22996547	22997823	.	+	.	ID=Os08t0467500-01;Name=Os08t0467500-01;Locus_id=Os08g0467500;Oryzabase Gene Symbol Synonym(s)=OsEnS-122;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 122;Note=TB2/DP1 and HVA22 related protein family protein.;Transcript_evidence=AK064041 (DDBJ%2C Best hit);ORF_evidence=Q07764 (UniProt);InterPro=TB2/DP1/HVA22-related protein (IPR004345);NIAS_FLcDNA=001-125-D01;Oryzabase=18416;Expression=AK064041;TENOR=Os08t0467500-01;KEGG=Os08t0467500-01
Chr08	irgsp1_rep	five_prime_UTR	22996547	22996685	.	+	.	Parent=Os08t0467500-01
Chr08	irgsp1_rep	CDS	22996686	22996704	.	+	0	Parent=Os08t0467500-01
Chr08	irgsp1_rep	CDS	22997082	22997124	.	+	2	Parent=Os08t0467500-01
Chr08	irgsp1_rep	CDS	22997221	22997401	.	+	1	Parent=Os08t0467500-01
Chr08	irgsp1_rep	CDS	22997553	22997576	.	+	0	Parent=Os08t0467500-01
Chr08	irgsp1_rep	three_prime_UTR	22997577	22997823	.	+	.	Parent=Os08t0467500-01
Chr08	irgsp1_rep	mRNA	22996735	22997823	.	+	.	ID=Os08t0467500-02;Name=Os08t0467500-02;Locus_id=Os08g0467500;Oryzabase Gene Symbol Synonym(s)=OsEnS-122;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 122;Note=Abscisic acid and stress inducible (A22) gene.;Transcript_evidence=AK100937 (DDBJ%2C Best hit);ORF_evidence=Q07764 (UniProt);InterPro=TB2/DP1/HVA22-related protein (IPR004345);NIAS_FLcDNA=J023136N21;Oryzabase=18416;Expression=AK100937;TENOR=Os08t0467500-02;KEGG=Os08t0467500-02
Chr08	irgsp1_rep	five_prime_UTR	22996735	22996987	.	+	.	Parent=Os08t0467500-02
Chr08	irgsp1_rep	CDS	22996988	22997124	.	+	0	Parent=Os08t0467500-02
Chr08	irgsp1_rep	CDS	22997221	22997401	.	+	1	Parent=Os08t0467500-02
Chr08	irgsp1_rep	CDS	22997553	22997576	.	+	0	Parent=Os08t0467500-02
Chr08	irgsp1_rep	three_prime_UTR	22997577	22997823	.	+	.	Parent=Os08t0467500-02
Chr08	irgsp1_rep	mRNA	23001273	23003145	.	+	.	ID=Os08t0467600-00;Name=Os08t0467600-00;Locus_id=Os08g0467600;Note=Hypothetical conserved gene.;Transcript_evidence=AK370590 (DDBJ);ORF_evidence=Q6YSC2 (UniProt);InterPro=Protein of unknown function DUF573 (IPR007592);TENOR=Os08t0467600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	23001273	23002871	.	+	0	Parent=Os08t0467600-00
Chr08	irgsp1_rep	three_prime_UTR	23002872	23003145	.	+	.	Parent=Os08t0467600-00
Chr08	irgsp1_rep	mRNA	23033230	23038506	.	+	.	ID=Os08t0468100-01;Name=Os08t0468100-01;Locus_id=Os08g0468100;Oryzabase Gene Symbol Synonym(s)=OsNR1%2C NR1%2C nia1%2C OsNIA1%2C NIA1%2C OsNIA2%2C NIA2;Oryzabase Gene Name Synonym(s)=nitrate reductase apoenzyme 1%2C nitrate reductase 1%2C Nitrate reductase [NADH]1;Note=Similar to Nitrate reductase.;Transcript_evidence=AK121810 (DDBJ%2C Best hit);ORF_evidence=P16081 (UniProt);GO=Biological Process: nitrate assimilation (GO:0042128),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: binding (GO:0005488),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: heme binding (GO:0020037),Molecular Function: molybdenum ion binding (GO:0030151),Molecular Function: oxidoreductase activity%2C acting on other nitrogenous compounds as donors%2C with NAD or NADP as acceptor (GO:0046857),Molecular Function: metal ion binding (GO:0046872),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Oxidoreductase%2C molybdopterin-binding domain (IPR000572),CytoChrome b5 (IPR001199),Oxidoreductase FAD/NAD(P)-binding (IPR001433),Flavoprotein pyridine nucleotide cytoChrome reductase (IPR001709),NADH:cytoChrome b5 reductase (CBR) (IPR001834),Moybdenum cofactor oxidoreductase%2C dimerisation (IPR005066),Oxidoreductase%2C FAD-binding domain (IPR008333),Eukaryotic molybdopterin oxidoreductase (IPR008335),Nitrate reductase NADH dependent (IPR012137),Immunoglobulin E-set (IPR014756),Ferredoxin reductase-type FAD-binding domain (IPR017927),Riboflavin synthase-like beta-barrel (IPR017938),CytoChrome b5%2C heme-binding site (IPR018506),Oxidoreductase%2C molybdopterin binding site (IPR022407);NIAS_FLcDNA=J033098A20;Oryzabase=9612;Expression=AK121810;TENOR=Os08t0468100-01;KEGG=Os08t0468100-01 (EC:1.7.1.1)
Chr08	irgsp1_rep	five_prime_UTR	23033230	23033348	.	+	.	Parent=Os08t0468100-01
Chr08	irgsp1_rep	CDS	23033349	23034387	.	+	0	Parent=Os08t0468100-01
Chr08	irgsp1_rep	CDS	23034496	23034636	.	+	2	Parent=Os08t0468100-01
Chr08	irgsp1_rep	CDS	23036575	23036807	.	+	2	Parent=Os08t0468100-01
Chr08	irgsp1_rep	CDS	23036893	23038230	.	+	0	Parent=Os08t0468100-01
Chr08	irgsp1_rep	three_prime_UTR	23038231	23038506	.	+	.	Parent=Os08t0468100-01
Chr08	irgsp1_rep	mRNA	23033973	23038463	.	+	.	ID=Os08t0468100-02;Name=Os08t0468100-02;Locus_id=Os08g0468100;Oryzabase Gene Symbol Synonym(s)=OsNR1%2C NR1%2C nia1%2C OsNIA1%2C NIA1%2C OsNIA2%2C NIA2;Oryzabase Gene Name Synonym(s)=nitrate reductase apoenzyme 1%2C nitrate reductase 1%2C Nitrate reductase [NADH]1;Note=Similar to Nitrate reductase.;Transcript_evidence=AK102363 (DDBJ%2C Best hit);ORF_evidence=P16081 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: heme binding (GO:0020037),Molecular Function: molybdenum ion binding (GO:0030151),Molecular Function: metal ion binding (GO:0046872);InterPro=Oxidoreductase%2C molybdopterin-binding domain (IPR000572),CytoChrome b5 (IPR001199),Oxidoreductase FAD/NAD(P)-binding (IPR001433),Flavoprotein pyridine nucleotide cytoChrome reductase (IPR001709),NADH:cytoChrome b5 reductase (CBR) (IPR001834),Moybdenum cofactor oxidoreductase%2C dimerisation (IPR005066),Oxidoreductase%2C FAD-binding domain (IPR008333),Eukaryotic molybdopterin oxidoreductase (IPR008335),Immunoglobulin E-set (IPR014756),Ferredoxin reductase-type FAD-binding domain (IPR017927),Riboflavin synthase-like beta-barrel (IPR017938),CytoChrome b5%2C heme-binding site (IPR018506);NIAS_FLcDNA=J033091J17;Oryzabase=9612;Expression=AK102363;TENOR=Os08t0468100-02;KEGG=Os08t0468100-02 (EC:1.7.1.1)
Chr08	irgsp1_rep	CDS	23033973	23034387	.	+	0	Parent=Os08t0468100-02
Chr08	irgsp1_rep	CDS	23034496	23034636	.	+	2	Parent=Os08t0468100-02
Chr08	irgsp1_rep	CDS	23036575	23036807	.	+	2	Parent=Os08t0468100-02
Chr08	irgsp1_rep	CDS	23036893	23038230	.	+	0	Parent=Os08t0468100-02
Chr08	irgsp1_rep	three_prime_UTR	23038231	23038463	.	+	.	Parent=Os08t0468100-02
Chr08	irgsp1_rep	mRNA	23036533	23038585	.	+	.	ID=Os08t0468100-03;Name=Os08t0468100-03;Locus_id=Os08g0468100;Oryzabase Gene Symbol Synonym(s)=OsNR1%2C NR1%2C nia1%2C OsNIA1%2C NIA1%2C OsNIA2%2C NIA2;Oryzabase Gene Name Synonym(s)=nitrate reductase apoenzyme 1%2C nitrate reductase 1%2C Nitrate reductase [NADH]1;Note=Similar to Nitrate reductase.;Transcript_evidence=AK101662 (DDBJ%2C Best hit);ORF_evidence=P16081 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: heme binding (GO:0020037),Molecular Function: molybdenum ion binding (GO:0030151),Molecular Function: metal ion binding (GO:0046872);InterPro=CytoChrome b5 (IPR001199),Oxidoreductase FAD/NAD(P)-binding (IPR001433),Flavoprotein pyridine nucleotide cytoChrome reductase (IPR001709),NADH:cytoChrome b5 reductase (CBR) (IPR001834),Moybdenum cofactor oxidoreductase%2C dimerisation (IPR005066),Oxidoreductase%2C FAD-binding domain (IPR008333),Eukaryotic molybdopterin oxidoreductase (IPR008335),Immunoglobulin E-set (IPR014756),Ferredoxin reductase-type FAD-binding domain (IPR017927),Riboflavin synthase-like beta-barrel (IPR017938),CytoChrome b5%2C heme-binding site (IPR018506);NIAS_FLcDNA=J033057L03;Oryzabase=9612;Expression=AK101662;TENOR=Os08t0468100-03;KEGG=Os08t0468100-03 (EC:1.7.1.1)
Chr08	irgsp1_rep	five_prime_UTR	23036533	23036534	.	+	.	Parent=Os08t0468100-03
Chr08	irgsp1_rep	CDS	23036535	23036807	.	+	0	Parent=Os08t0468100-03
Chr08	irgsp1_rep	CDS	23036893	23038230	.	+	0	Parent=Os08t0468100-03
Chr08	irgsp1_rep	three_prime_UTR	23038231	23038585	.	+	.	Parent=Os08t0468100-03
Chr08	irgsp1_rep	mRNA	23036448	23038258	.	-	.	ID=Os08t0468200-01;Name=Os08t0468200-01;Locus_id=Os08g0468200;Note=Hypothetical protein.;Transcript_evidence=AK107363 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-127-A08;TENOR=Os08t0468200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	23038221	23038258	.	-	.	Parent=Os08t0468200-01
Chr08	irgsp1_rep	CDS	23037741	23038220	.	-	0	Parent=Os08t0468200-01
Chr08	irgsp1_rep	three_prime_UTR	23036448	23037740	.	-	.	Parent=Os08t0468200-01
Chr08	irgsp1_rep	mRNA	23039616	23039990	.	+	.	ID=Os08t0468300-00;Name=Os08t0468300-00;Locus_id=Os08g0468300;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001175616.1 (RefSeq);TENOR=Os08t0468300-00
Chr08	irgsp1_rep	CDS	23039616	23039990	.	+	0	Parent=Os08t0468300-00
Chr08	irgsp1_rep	mRNA	23040806	23044453	.	+	.	ID=Os08t0468400-01;Name=Os08t0468400-01;Locus_id=Os08g0468400;Note=Kinetochore protein Ndc80 domain containing protein.;Transcript_evidence=AK063363 (DDBJ%2C Best hit);ORF_evidence=B6U218 (UniProt);InterPro=Kinetochore protein Ndc80 (IPR005550);NIAS_FLcDNA=001-114-D04;Expression=AK063363;TENOR=Os08t0468400-01;KEGG=Os08t0468400-01
Chr08	irgsp1_rep	five_prime_UTR	23040806	23040842	.	+	.	Parent=Os08t0468400-01
Chr08	irgsp1_rep	CDS	23040843	23041173	.	+	0	Parent=Os08t0468400-01
Chr08	irgsp1_rep	CDS	23041252	23041990	.	+	2	Parent=Os08t0468400-01
Chr08	irgsp1_rep	CDS	23042760	23043006	.	+	1	Parent=Os08t0468400-01
Chr08	irgsp1_rep	CDS	23043839	23043985	.	+	0	Parent=Os08t0468400-01
Chr08	irgsp1_rep	CDS	23044090	23044317	.	+	0	Parent=Os08t0468400-01
Chr08	irgsp1_rep	three_prime_UTR	23044318	23044453	.	+	.	Parent=Os08t0468400-01
Chr08	irgsp1_rep	mRNA	23051707	23055631	.	-	.	ID=Os08t0468700-00;Name=Os08t0468700-00;Locus_id=Os08g0468700;Oryzabase Gene Symbol Synonym(s)=OsNIA2%2C NIA2%2C OsNR2%2C NR2;Oryzabase Gene Name Synonym(s)=nitrate reductase apoenzyme 2%2C nitrate reductase 2;Note=Similar to Nitrate reductase [NADH] 1 (EC 1.7.1.1) (NR1).;Transcript_evidence=AK121810 (DDBJ%2C Secondary hit);ORF_evidence=P16081 (UniProt);GO=Biological Process: nitrate assimilation (GO:0042128),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: binding (GO:0005488),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: heme binding (GO:0020037),Molecular Function: molybdenum ion binding (GO:0030151),Molecular Function: oxidoreductase activity%2C acting on other nitrogenous compounds as donors%2C with NAD or NADP as acceptor (GO:0046857),Molecular Function: metal ion binding (GO:0046872),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Oxidoreductase%2C molybdopterin-binding domain (IPR000572),CytoChrome b5 (IPR001199),Oxidoreductase FAD/NAD(P)-binding (IPR001433),Flavoprotein pyridine nucleotide cytoChrome reductase (IPR001709),NADH:cytoChrome b5 reductase (CBR) (IPR001834),Moybdenum cofactor oxidoreductase%2C dimerisation (IPR005066),Oxidoreductase%2C FAD-binding domain (IPR008333),Eukaryotic molybdopterin oxidoreductase (IPR008335),Nitrate reductase NADH dependent (IPR012137),Immunoglobulin E-set (IPR014756),Ferredoxin reductase-type FAD-binding domain (IPR017927),Riboflavin synthase-like beta-barrel (IPR017938),CytoChrome b5%2C heme-binding site (IPR018506),Oxidoreductase%2C molybdopterin binding site (IPR022407);Oryzabase=9613;Expression=AK121810;TENOR=Os08t0468700-00;KEGG=Os08t0468700-00 (EC:1.7.1.1)
Chr08	irgsp1_rep	five_prime_UTR	23055576	23055631	.	-	.	Parent=Os08t0468700-00
Chr08	irgsp1_rep	CDS	23054537	23055575	.	-	0	Parent=Os08t0468700-00
Chr08	irgsp1_rep	CDS	23054300	23054440	.	-	2	Parent=Os08t0468700-00
Chr08	irgsp1_rep	CDS	23053372	23053604	.	-	2	Parent=Os08t0468700-00
Chr08	irgsp1_rep	CDS	23051949	23053286	.	-	0	Parent=Os08t0468700-00
Chr08	irgsp1_rep	three_prime_UTR	23051707	23051948	.	-	.	Parent=Os08t0468700-00
Chr08	irgsp1_rep	mRNA	23051921	23053731	.	+	.	ID=Os08t0468801-01;Name=Os08t0468801-01;Locus_id=Os08g0468801;Note=Hypothetical protein.;Transcript_evidence=AK107363 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-127-A08;TENOR=Os08t0468801-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	23051921	23051958	.	+	.	Parent=Os08t0468801-01
Chr08	irgsp1_rep	CDS	23051959	23052438	.	+	0	Parent=Os08t0468801-01
Chr08	irgsp1_rep	three_prime_UTR	23052439	23053731	.	+	.	Parent=Os08t0468801-01
Chr08	irgsp1_rep	mRNA	23065627	23066987	.	-	.	ID=Os08t0468901-00;Name=Os08t0468901-00;Locus_id=Os08g0468901;Note=Hypothetical protein.;Transcript_evidence=EU943155 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0468901-00
Chr08	irgsp1_rep	five_prime_UTR	23066987	23066987	.	-	.	Parent=Os08t0468901-00
Chr08	irgsp1_rep	CDS	23066123	23066986	.	-	0	Parent=Os08t0468901-00
Chr08	irgsp1_rep	three_prime_UTR	23065627	23066122	.	-	.	Parent=Os08t0468901-00
Chr08	irgsp1_rep	mRNA	23065634	23066980	.	+	.	ID=Os08t0469000-00;Name=Os08t0469000-00;Locus_id=Os08g0469000;Note=Peptidase A1 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001147206.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);TENOR=Os08t0469000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	23065634	23066980	.	+	0	Parent=Os08t0469000-00
Chr08	irgsp1_rep	mRNA	23069173	23070504	.	-	.	ID=Os08t0469050-00;Name=Os08t0469050-00;Locus_id=Os08g0469050;Note=Conserved hypothetical protein.;Transcript_evidence=EU943155 (DDBJ);ORF_evidence=NP_001062011.1 (RefSeq);TENOR=Os08t0469050-00
Chr08	irgsp1_rep	CDS	23069173	23070504	.	-	0	Parent=Os08t0469050-00
Chr08	irgsp1_rep	mRNA	23069303	23070600	.	+	.	ID=Os08t0469100-01;Name=Os08t0469100-01;Locus_id=Os08g0469100;Note=Peptidase aspartic%2C catalytic domain containing protein.;Transcript_evidence=AK108789 (DDBJ%2C Best hit);ORF_evidence=A2YW36 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=002-151-B04;Expression=AK108789;TENOR=Os08t0469100-01;KEGG=Os08t0469100-01
Chr08	irgsp1_rep	five_prime_UTR	23069303	23069304	.	+	.	Parent=Os08t0469100-01
Chr08	irgsp1_rep	CDS	23069305	23070426	.	+	0	Parent=Os08t0469100-01
Chr08	irgsp1_rep	three_prime_UTR	23070427	23070600	.	+	.	Parent=Os08t0469100-01
Chr08	irgsp1_rep	mRNA	23072213	23074594	.	-	.	ID=Os08t0469200-00;Name=Os08t0469200-00;Locus_id=Os08g0469200;Note=Similar to salt tolerant protein.;Transcript_evidence=EU968027 (DDBJ);ORF_evidence=B6TSR2 (UniProt);TENOR=Os08t0469200-00;KEGG=Os08t0469200-00
Chr08	irgsp1_rep	five_prime_UTR	23074417	23074594	.	-	.	Parent=Os08t0469200-00
Chr08	irgsp1_rep	five_prime_UTR	23074293	23074338	.	-	.	Parent=Os08t0469200-00
Chr08	irgsp1_rep	CDS	23074217	23074292	.	-	0	Parent=Os08t0469200-00
Chr08	irgsp1_rep	CDS	23072213	23072409	.	-	2	Parent=Os08t0469200-00
Chr08	irgsp1_rep	mRNA	23076092	23077193	.	+	.	ID=Os08t0469400-00;Name=Os08t0469400-00;Locus_id=Os08g0469400;Note=Similar to Transmembrane emp24 domain-containing protein 10.;Transcript_evidence=FP092855 (DDBJ);ORF_evidence=B6U1N3 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: integral to membrane (GO:0016021);InterPro=GOLD (IPR009038);TENOR=Os08t0469400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	23076092	23076283	.	+	0	Parent=Os08t0469400-00
Chr08	irgsp1_rep	CDS	23076527	23076748	.	+	0	Parent=Os08t0469400-00
Chr08	irgsp1_rep	three_prime_UTR	23076749	23076763	.	+	.	Parent=Os08t0469400-00
Chr08	irgsp1_rep	three_prime_UTR	23076944	23077193	.	+	.	Parent=Os08t0469400-00
Chr08	irgsp1_rep	mRNA	23077629	23079429	.	-	.	ID=Os08t0469500-01;Name=Os08t0469500-01;Locus_id=Os08g0469500;Oryzabase Gene Symbol Synonym(s)=Os_F0790;Note=Similar to F-box domain containing protein.;Transcript_evidence=AK109599 (DDBJ%2C Best hit);ORF_evidence=NP_001150287.1 (RefSeq);NIAS_FLcDNA=002-137-E02;Oryzabase=17526;Expression=AK109599;TENOR=Os08t0469500-01;KEGG=Os08t0469500-01
Chr08	irgsp1_rep	five_prime_UTR	23079366	23079429	.	-	.	Parent=Os08t0469500-01
Chr08	irgsp1_rep	CDS	23078802	23079365	.	-	0	Parent=Os08t0469500-01
Chr08	irgsp1_rep	CDS	23078594	23078696	.	-	0	Parent=Os08t0469500-01
Chr08	irgsp1_rep	CDS	23078211	23078491	.	-	2	Parent=Os08t0469500-01
Chr08	irgsp1_rep	CDS	23077865	23078101	.	-	0	Parent=Os08t0469500-01
Chr08	irgsp1_rep	three_prime_UTR	23077629	23077864	.	-	.	Parent=Os08t0469500-01
Chr08	irgsp1_rep	mRNA	23080414	23081034	.	-	.	ID=Os08t0469600-01;Name=Os08t0469600-01;Locus_id=Os08g0469600;Note=Conserved hypothetical protein.;Transcript_evidence=AK062647 (DDBJ%2C Best hit);ORF_evidence=B8BBK4 (UniProt);NIAS_FLcDNA=001-105-E03;Expression=AK062647;TENOR=Os08t0469600-01;KEGG=Os08t0469600-01
Chr08	irgsp1_rep	five_prime_UTR	23080887	23081034	.	-	.	Parent=Os08t0469600-01
Chr08	irgsp1_rep	CDS	23080518	23080886	.	-	0	Parent=Os08t0469600-01
Chr08	irgsp1_rep	three_prime_UTR	23080414	23080517	.	-	.	Parent=Os08t0469600-01
Chr08	irgsp1_rep	mRNA	23085520	23087603	.	+	.	ID=Os08t0469700-01;Name=Os08t0469700-01;Locus_id=Os08g0469700;Note=MORN motif repeat containing protein.;Transcript_evidence=AK105577 (DDBJ%2C Best hit);ORF_evidence=A2YW40 (UniProt);InterPro=MORN motif (IPR003409);NIAS_FLcDNA=001-128-D12;Expression=AK105577;TENOR=Os08t0469700-01;KEGG=Os08t0469700-01
Chr08	irgsp1_rep	five_prime_UTR	23085520	23085731	.	+	.	Parent=Os08t0469700-01
Chr08	irgsp1_rep	CDS	23085732	23085784	.	+	0	Parent=Os08t0469700-01
Chr08	irgsp1_rep	CDS	23086279	23086671	.	+	1	Parent=Os08t0469700-01
Chr08	irgsp1_rep	CDS	23086768	23086996	.	+	1	Parent=Os08t0469700-01
Chr08	irgsp1_rep	CDS	23087095	23087259	.	+	0	Parent=Os08t0469700-01
Chr08	irgsp1_rep	three_prime_UTR	23087260	23087603	.	+	.	Parent=Os08t0469700-01
Chr08	irgsp1_rep	mRNA	23085887	23086259	.	-	.	ID=Os08t0469750-00;Name=Os08t0469750-00;Locus_id=Os08g0469750;Note=Hypothetical protein.;Transcript_evidence=EU955192 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0469750-00
Chr08	irgsp1_rep	five_prime_UTR	23086259	23086259	.	-	.	Parent=Os08t0469750-00
Chr08	irgsp1_rep	CDS	23085887	23086258	.	-	0	Parent=Os08t0469750-00
Chr08	irgsp1_rep	mRNA	23093809	23095247	.	+	.	ID=Os08t0470000-01;Name=Os08t0470000-01;Locus_id=Os08g0470000;Note=Conserved hypothetical protein.;Transcript_evidence=AK242082 (DDBJ%2C Best hit);ORF_evidence=B8BBK6 (UniProt);NIAS_FLcDNA=J075138F19;TENOR=Os08t0470000-01;KEGG=Os08t0470000-01
Chr08	irgsp1_rep	five_prime_UTR	23093809	23093850	.	+	.	Parent=Os08t0470000-01
Chr08	irgsp1_rep	CDS	23093851	23094185	.	+	0	Parent=Os08t0470000-01
Chr08	irgsp1_rep	CDS	23094397	23094436	.	+	1	Parent=Os08t0470000-01
Chr08	irgsp1_rep	three_prime_UTR	23094437	23094522	.	+	.	Parent=Os08t0470000-01
Chr08	irgsp1_rep	three_prime_UTR	23094599	23095247	.	+	.	Parent=Os08t0470000-01
Chr08	irgsp1_rep	mRNA	23117162	23119489	.	-	.	ID=Os08t0470200-01;Name=Os08t0470200-01;Locus_id=Os08g0470200;CGSNL Gene Symbol=ALPHACA6;CGSNL Gene Name=ALPHA-CARBONIC ANHYDRASE 6;Oryzabase Gene Symbol Synonym(s)=OsalphaCA6%2C alphaCA6;Oryzabase Gene Name Synonym(s)=alpha-carbonic anhydrase 6;Note=Similar to Nectarin III.;Transcript_evidence=AK060039 (DDBJ%2C Best hit);ORF_evidence=NP_001147028.1 (RefSeq);InterPro=Carbonic anhydrase%2C alpha-class%2C catalytic domain (IPR001148),Carbonic anhydrase%2C alpha-class (IPR023561);NIAS_FLcDNA=006-304-B06;Oryzabase=21650;Expression=AK060039;TENOR=Os08t0470200-01;KEGG=Os08t0470200-01 (EC:4.2.1.1)
Chr08	irgsp1_rep	five_prime_UTR	23119423	23119489	.	-	.	Parent=Os08t0470200-01
Chr08	irgsp1_rep	CDS	23119332	23119422	.	-	0	Parent=Os08t0470200-01
Chr08	irgsp1_rep	CDS	23118905	23119229	.	-	2	Parent=Os08t0470200-01
Chr08	irgsp1_rep	CDS	23118673	23118775	.	-	1	Parent=Os08t0470200-01
Chr08	irgsp1_rep	CDS	23118376	23118418	.	-	0	Parent=Os08t0470200-01
Chr08	irgsp1_rep	CDS	23118251	23118292	.	-	2	Parent=Os08t0470200-01
Chr08	irgsp1_rep	CDS	23117862	23117914	.	-	2	Parent=Os08t0470200-01
Chr08	irgsp1_rep	three_prime_UTR	23117861	23117861	.	-	.	Parent=Os08t0470200-01
Chr08	irgsp1_rep	three_prime_UTR	23117162	23117481	.	-	.	Parent=Os08t0470200-01
Chr08	irgsp1_rep	mRNA	23117162	23119489	.	-	.	ID=Os08t0470200-02;Name=Os08t0470200-02;Locus_id=Os08g0470200;CGSNL Gene Symbol=ALPHACA6;CGSNL Gene Name=ALPHA-CARBONIC ANHYDRASE 6;Oryzabase Gene Symbol Synonym(s)=OsalphaCA6%2C alphaCA6;Oryzabase Gene Name Synonym(s)=alpha-carbonic anhydrase 6;Note=Similar to carbonic anhydrase.;Transcript_evidence=AK059773 (DDBJ%2C Best hit);ORF_evidence=NP_001147028.1 (RefSeq);InterPro=Carbonic anhydrase%2C alpha-class%2C catalytic domain (IPR001148),Carbonic anhydrase%2C alpha-class (IPR023561);NIAS_FLcDNA=006-204-A01;Oryzabase=21650;Expression=AK059773;TENOR=Os08t0470200-02;KEGG=Os08t0470200-02 (EC:4.2.1.1)
Chr08	irgsp1_rep	five_prime_UTR	23119423	23119489	.	-	.	Parent=Os08t0470200-02
Chr08	irgsp1_rep	CDS	23119332	23119422	.	-	0	Parent=Os08t0470200-02
Chr08	irgsp1_rep	CDS	23118905	23119229	.	-	2	Parent=Os08t0470200-02
Chr08	irgsp1_rep	CDS	23118673	23118775	.	-	1	Parent=Os08t0470200-02
Chr08	irgsp1_rep	CDS	23118251	23118418	.	-	0	Parent=Os08t0470200-02
Chr08	irgsp1_rep	CDS	23117861	23117914	.	-	0	Parent=Os08t0470200-02
Chr08	irgsp1_rep	CDS	23117395	23117481	.	-	0	Parent=Os08t0470200-02
Chr08	irgsp1_rep	three_prime_UTR	23117162	23117394	.	-	.	Parent=Os08t0470200-02
Chr08	irgsp1_rep	mRNA	23147294	23151464	.	-	.	ID=Os08t0470700-00;Name=Os08t0470700-00;Locus_id=Os08g0470700;CGSNL Gene Symbol=ALPHACA7;CGSNL Gene Name=ALPHA-CARBONIC ANHYDRASE 7;Oryzabase Gene Symbol Synonym(s)=OsalphaCA7%2C alphaCA7;Oryzabase Gene Name Synonym(s)=alpha-carbonic anhydrase 7;Note=Similar to carbonic anhydrase.;Transcript_evidence=AK368139 (DDBJ);ORF_evidence=NP_001149032.1 (RefSeq);GO=Biological Process: one-carbon metabolic process (GO:0006730),Molecular Function: carbonate dehydratase activity (GO:0004089),Molecular Function: zinc ion binding (GO:0008270);InterPro=Carbonic anhydrase%2C alpha-class%2C catalytic domain (IPR001148),Carbonic anhydrase%2C alpha-class%2C conserved site (IPR018338),Carbonic anhydrase%2C alpha-class (IPR023561);Oryzabase=21651;TENOR=Os08t0470700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	23151377	23151464	.	-	0	Parent=Os08t0470700-00
Chr08	irgsp1_rep	CDS	23151007	23151218	.	-	2	Parent=Os08t0470700-00
Chr08	irgsp1_rep	CDS	23148815	23148921	.	-	0	Parent=Os08t0470700-00
Chr08	irgsp1_rep	CDS	23148612	23148714	.	-	1	Parent=Os08t0470700-00
Chr08	irgsp1_rep	CDS	23148052	23148250	.	-	0	Parent=Os08t0470700-00
Chr08	irgsp1_rep	CDS	23147350	23147462	.	-	2	Parent=Os08t0470700-00
Chr08	irgsp1_rep	three_prime_UTR	23147294	23147349	.	-	.	Parent=Os08t0470700-00
Chr08	irgsp1_rep	mRNA	23158234	23159595	.	-	.	ID=Os08t0471000-00;Name=Os08t0471000-00;Locus_id=Os08g0471000;CGSNL Gene Symbol=HSFB4A;CGSNL Gene Name=HEAT STRESS TRANSCRIPTION FACTOR B4A;Oryzabase Gene Symbol Synonym(s)=HSfB4a%2C OsHsfB4a%2C OsHsf-20%2C HSF20%2C OsHSF20;Oryzabase Gene Name Synonym(s)=Heat stress transcription factor B4a%2C Putative heat stress transcription factor B-4a%2C Heat stress transcription factor 20;Note=Similar to cDNA%2C clone: J065120N14%2C full insert sequence.;Transcript_evidence=AK356002 (DDBJ);ORF_evidence=B7F8M8 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Heat shock factor (HSF)-type%2C DNA-binding (IPR000232),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);Oryzabase=8564;TENOR=Os08t0471000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	23159532	23159595	.	-	.	Parent=Os08t0471000-00
Chr08	irgsp1_rep	CDS	23159265	23159531	.	-	0	Parent=Os08t0471000-00
Chr08	irgsp1_rep	CDS	23158296	23159171	.	-	0	Parent=Os08t0471000-00
Chr08	irgsp1_rep	three_prime_UTR	23158234	23158295	.	-	.	Parent=Os08t0471000-00
Chr08	irgsp1_rep	mRNA	23158334	23159481	.	+	.	ID=Os08t0471150-00;Name=Os08t0471150-00;Locus_id=Os08g0471150;Note=Hypothetical protein.;Transcript_evidence=tplb0033f11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0471150-00
Chr08	irgsp1_rep	five_prime_UTR	23158334	23158497	.	+	.	Parent=Os08t0471150-00
Chr08	irgsp1_rep	CDS	23158498	23158709	.	+	0	Parent=Os08t0471150-00
Chr08	irgsp1_rep	CDS	23158974	23159170	.	+	1	Parent=Os08t0471150-00
Chr08	irgsp1_rep	CDS	23159264	23159316	.	+	2	Parent=Os08t0471150-00
Chr08	irgsp1_rep	three_prime_UTR	23159317	23159481	.	+	.	Parent=Os08t0471150-00
Chr08	irgsp1_rep	mRNA	23184255	23188026	.	+	.	ID=Os08t0471300-01;Name=Os08t0471300-01;Locus_id=Os08g0471300;Note=Similar to Methyl-CpG binding protein-like.;Transcript_evidence=AK288188 (DDBJ%2C Best hit);ORF_evidence=Q6YPC1 (UniProt);NIAS_FLcDNA=J090006H06;TENOR=Os08t0471300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	23184255	23185141	.	+	.	Parent=Os08t0471300-01
Chr08	irgsp1_rep	CDS	23185142	23185462	.	+	0	Parent=Os08t0471300-01
Chr08	irgsp1_rep	three_prime_UTR	23185463	23188026	.	+	.	Parent=Os08t0471300-01
Chr08	irgsp1_rep	mRNA	23213213	23217399	.	+	.	ID=Os08t0471800-01;Name=Os08t0471800-01;Locus_id=Os08g0471800;CGSNL Gene Symbol=REM5.2;CGSNL Gene Name=REMORIN 5.2;Oryzabase Gene Symbol Synonym(s)=OsREM5.2;Oryzabase Gene Name Synonym(s)=Remorin 5.2%2C remorin group 5 member 2;Note=Remorin%2C C-terminal region domain containing protein.;Transcript_evidence=AK105281 (DDBJ%2C Best hit);ORF_evidence=B9G1D0 (UniProt);InterPro=Remorin%2C C-terminal (IPR005516);NIAS_FLcDNA=001-116-C04;Oryzabase=20276;Expression=AK105281;TENOR=Os08t0471800-01;KEGG=Os08t0471800-01
Chr08	irgsp1_rep	five_prime_UTR	23213213	23213313	.	+	.	Parent=Os08t0471800-01
Chr08	irgsp1_rep	CDS	23213314	23213478	.	+	0	Parent=Os08t0471800-01
Chr08	irgsp1_rep	CDS	23214054	23214135	.	+	0	Parent=Os08t0471800-01
Chr08	irgsp1_rep	CDS	23214258	23214368	.	+	2	Parent=Os08t0471800-01
Chr08	irgsp1_rep	CDS	23214453	23215247	.	+	2	Parent=Os08t0471800-01
Chr08	irgsp1_rep	CDS	23215579	23215945	.	+	2	Parent=Os08t0471800-01
Chr08	irgsp1_rep	CDS	23216460	23216541	.	+	1	Parent=Os08t0471800-01
Chr08	irgsp1_rep	CDS	23216718	23216924	.	+	0	Parent=Os08t0471800-01
Chr08	irgsp1_rep	three_prime_UTR	23216925	23216943	.	+	.	Parent=Os08t0471800-01
Chr08	irgsp1_rep	three_prime_UTR	23217129	23217399	.	+	.	Parent=Os08t0471800-01
Chr08	irgsp1_rep	mRNA	23213395	23216539	.	-	.	ID=Os08t0471850-00;Name=Os08t0471850-00;Locus_id=Os08g0471850;Note=Hypothetical protein.;Transcript_evidence=tplb0035l08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0471850-00
Chr08	irgsp1_rep	five_prime_UTR	23216465	23216539	.	-	.	Parent=Os08t0471850-00
Chr08	irgsp1_rep	five_prime_UTR	23215504	23215949	.	-	.	Parent=Os08t0471850-00
Chr08	irgsp1_rep	five_prime_UTR	23215123	23215133	.	-	.	Parent=Os08t0471850-00
Chr08	irgsp1_rep	CDS	23214706	23215122	.	-	0	Parent=Os08t0471850-00
Chr08	irgsp1_rep	three_prime_UTR	23214557	23214705	.	-	.	Parent=Os08t0471850-00
Chr08	irgsp1_rep	three_prime_UTR	23213395	23213464	.	-	.	Parent=Os08t0471850-00
Chr08	irgsp1_rep	mRNA	23219093	23231034	.	-	.	ID=Os08t0471900-01;Name=Os08t0471900-01;Locus_id=Os08g0471900;Note=Zinc finger%2C ZPR1-type domain containing protein.;Transcript_evidence=AK069434 (DDBJ%2C Best hit);ORF_evidence=Q1EPF5 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C ZPR1-type (IPR004457);NIAS_FLcDNA=J023022E19;Expression=AK069434;TENOR=Os08t0471900-01;KEGG=Os08t0471900-01
Chr08	irgsp1_rep	five_prime_UTR	23230883	23231034	.	-	.	Parent=Os08t0471900-01
Chr08	irgsp1_rep	CDS	23230739	23230882	.	-	0	Parent=Os08t0471900-01
Chr08	irgsp1_rep	CDS	23230603	23230647	.	-	0	Parent=Os08t0471900-01
Chr08	irgsp1_rep	CDS	23230459	23230499	.	-	0	Parent=Os08t0471900-01
Chr08	irgsp1_rep	CDS	23230269	23230350	.	-	1	Parent=Os08t0471900-01
Chr08	irgsp1_rep	CDS	23223501	23223545	.	-	0	Parent=Os08t0471900-01
Chr08	irgsp1_rep	CDS	23223365	23223421	.	-	0	Parent=Os08t0471900-01
Chr08	irgsp1_rep	CDS	23223202	23223261	.	-	0	Parent=Os08t0471900-01
Chr08	irgsp1_rep	CDS	23222995	23223122	.	-	0	Parent=Os08t0471900-01
Chr08	irgsp1_rep	CDS	23222397	23222664	.	-	1	Parent=Os08t0471900-01
Chr08	irgsp1_rep	CDS	23222250	23222316	.	-	0	Parent=Os08t0471900-01
Chr08	irgsp1_rep	CDS	23221485	23221555	.	-	2	Parent=Os08t0471900-01
Chr08	irgsp1_rep	CDS	23221289	23221378	.	-	0	Parent=Os08t0471900-01
Chr08	irgsp1_rep	CDS	23220758	23220866	.	-	0	Parent=Os08t0471900-01
Chr08	irgsp1_rep	CDS	23220125	23220216	.	-	2	Parent=Os08t0471900-01
Chr08	irgsp1_rep	CDS	23219652	23219757	.	-	0	Parent=Os08t0471900-01
Chr08	irgsp1_rep	CDS	23219315	23219415	.	-	2	Parent=Os08t0471900-01
Chr08	irgsp1_rep	three_prime_UTR	23219093	23219314	.	-	.	Parent=Os08t0471900-01
Chr08	irgsp1_rep	mRNA	23234477	23240624	.	+	.	ID=Os08t0472000-01;Name=Os08t0472000-01;Locus_id=Os08g0472000;RAP-DB Gene Symbol Synonym(s)=TRAB1%2C OsbZIP66%2C OsABF5%2C Osbzip66;RAP-DB Gene Name Synonym(s)=TRANSCRIPTION FACTOR RESPONSIBLE FOR ABA REGULATION 1%2C basic region leucine zipper factor TRAB1%2C basic domain/Leu zipper factor TRAB1%2C transcription factor responsible for ABA regulation 1%2C bZIP transcription factor 66;CGSNL Gene Symbol=TRAB1;CGSNL Gene Name=TRANSCRIPTION FACTOR RESPONSIBLE FOR ABA REGULATION 1;Oryzabase Gene Symbol Synonym(s)=OsbZIP66%2C OsABF5%2C Osbzip66%2C OsTRAB1%2C bZIP66%2C ABF5;Oryzabase Gene Name Synonym(s)=basic region leucine zipper factor TRAB1%2C basic domain/Leu zipper factor TRAB1%2C transcription factor responsible for ABA regulation 1%2C bZIP transcription factor 66;Note=bZIP transcription factor%2C Abscisic acid (ABA)-regulated transcription;Transcript_evidence=AB023288;ORF_evidence=Q6ZDF3;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Basic-leucine zipper domain (IPR004827);Manual Curation=December 10%2C 2015;Literature_PMID=10611387,18315698;Oryzabase=9819;TENOR=Os08t0472000-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	23234477	23234489	.	+	.	Parent=Os08t0472000-01
Chr08	irgsp1_rep	CDS	23234490	23235245	.	+	0	Parent=Os08t0472000-01
Chr08	irgsp1_rep	CDS	23235485	23235556	.	+	0	Parent=Os08t0472000-01
Chr08	irgsp1_rep	CDS	23237029	23237082	.	+	0	Parent=Os08t0472000-01
Chr08	irgsp1_rep	CDS	23240351	23240425	.	+	0	Parent=Os08t0472000-01
Chr08	irgsp1_rep	three_prime_UTR	23240426	23240624	.	+	.	Parent=Os08t0472000-01
Chr08	irgsp1_rep	mRNA	23260433	23262564	.	-	.	ID=Os08t0472400-00;Name=Os08t0472400-00;Locus_id=Os08g0472400;Note=Conserved hypothetical protein.;Transcript_evidence=FP097825 (DDBJ);ORF_evidence=Q6ZDE7 (UniProt);TENOR=Os08t0472400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	23260690	23262564	.	-	0	Parent=Os08t0472400-00
Chr08	irgsp1_rep	three_prime_UTR	23260433	23260689	.	-	.	Parent=Os08t0472400-00
Chr08	irgsp1_rep	mRNA	23273324	23281480	.	+	.	ID=Os08t0472600-01;Name=Os08t0472600-01;Locus_id=Os08g0472600;RAP-DB Gene Symbol Synonym(s)=OsFUT11%2C FucTA%2C FucT;RAP-DB Gene Name Synonym(s)=core alpha-1%2C3-fucosyltransferase;Oryzabase Gene Symbol Synonym(s)=OsFUT11%2C FUT11%2C FucTA%2C OsFucT;Oryzabase Gene Name Synonym(s)=core alpha-1%2C 3-fucosyltransferase%2C alpha1%2C 3-Fucosyltransferase%2C Glycoprotein 3-alpha-L-fucosyltransferase A;Note=Alpha1%2C3-fucosyltransferase%2C Basipetal auxin transport%2C Gravitropic response%2C N-glycan biosynthesis;Transcript_evidence=AK099681;ORF_evidence=Q6ZDE5;GO=Biological Process: protein glycosylation (GO:0006486),Molecular Function: fucosyltransferase activity (GO:0008417),Cellular Component: membrane (GO:0016020);InterPro=Glycosyl transferase family 10 (IPR001503);NIAS_FLcDNA=J013071F22;Manual Curation=June 6%2C 2016;Literature_PMID=27241276,15604706;Oryzabase=14655;Expression=AK099681;TENOR=Os08t0472600-01;KEGG=Os08t0472600-01
Chr08	irgsp1_rep	five_prime_UTR	23273324	23273414	.	+	.	Parent=Os08t0472600-01
Chr08	irgsp1_rep	CDS	23273415	23273807	.	+	0	Parent=Os08t0472600-01
Chr08	irgsp1_rep	CDS	23275630	23275790	.	+	0	Parent=Os08t0472600-01
Chr08	irgsp1_rep	CDS	23276309	23276550	.	+	1	Parent=Os08t0472600-01
Chr08	irgsp1_rep	CDS	23277421	23277525	.	+	2	Parent=Os08t0472600-01
Chr08	irgsp1_rep	CDS	23277987	23278143	.	+	2	Parent=Os08t0472600-01
Chr08	irgsp1_rep	CDS	23279101	23279328	.	+	1	Parent=Os08t0472600-01
Chr08	irgsp1_rep	CDS	23280765	23281020	.	+	1	Parent=Os08t0472600-01
Chr08	irgsp1_rep	three_prime_UTR	23281021	23281480	.	+	.	Parent=Os08t0472600-01
Chr08	irgsp1_rep	mRNA	23288613	23294162	.	-	.	ID=Os08t0472800-01;Name=Os08t0472800-01;Locus_id=Os08g0472800;CGSNL Gene Symbol=ABA8OX2;CGSNL Gene Name=ABA-8'-HYDROXYLASE 2;Oryzabase Gene Symbol Synonym(s)=OsABA8OX2%2C OsABA8ox2%2C CYP707A6%2C OsCYP707A6%2C OsAba-ox2%2C OsABA8ox2%2C OsABA8OH2%2C ABA8OH2%2C ABA8'-OH2%2C OsABA8'ox2%2C ABA8'ox2%2C OsABAX2%2C ABAX2;Oryzabase Gene Name Synonym(s)=Abscisic acid 8'-hydroxylase 2%2C ABA 8'-hydroxylase 2%2C CytoChrome P450 707A6;Note=CytoChrome P450 family protein.;Transcript_evidence=AK120757 (DDBJ%2C Best hit);ORF_evidence=Q6ZDE3 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J023007D09;Oryzabase=7252;Expression=AK120757;TENOR=Os08t0472800-01;KEGG=Os08t0472800-01
Chr08	irgsp1_rep	five_prime_UTR	23293914	23294162	.	-	.	Parent=Os08t0472800-01
Chr08	irgsp1_rep	CDS	23293669	23293913	.	-	0	Parent=Os08t0472800-01
Chr08	irgsp1_rep	CDS	23293210	23293531	.	-	1	Parent=Os08t0472800-01
Chr08	irgsp1_rep	CDS	23292858	23293010	.	-	0	Parent=Os08t0472800-01
Chr08	irgsp1_rep	CDS	23292500	23292772	.	-	0	Parent=Os08t0472800-01
Chr08	irgsp1_rep	CDS	23292295	23292384	.	-	0	Parent=Os08t0472800-01
Chr08	irgsp1_rep	CDS	23291633	23291711	.	-	0	Parent=Os08t0472800-01
Chr08	irgsp1_rep	CDS	23290006	23290112	.	-	2	Parent=Os08t0472800-01
Chr08	irgsp1_rep	CDS	23289286	23289404	.	-	0	Parent=Os08t0472800-01
Chr08	irgsp1_rep	CDS	23289028	23289172	.	-	1	Parent=Os08t0472800-01
Chr08	irgsp1_rep	three_prime_UTR	23288613	23289027	.	-	.	Parent=Os08t0472800-01
Chr08	irgsp1_rep	mRNA	23289286	23293871	.	+	.	ID=Os08t0473200-00;Name=Os08t0473200-00;Locus_id=Os08g0473200;Note=Hypothetical protein.;Transcript_evidence=tplb0043h07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0473200-00
Chr08	irgsp1_rep	five_prime_UTR	23289286	23289384	.	+	.	Parent=Os08t0473200-00
Chr08	irgsp1_rep	five_prime_UTR	23289983	23290059	.	+	.	Parent=Os08t0473200-00
Chr08	irgsp1_rep	CDS	23290060	23290108	.	+	0	Parent=Os08t0473200-00
Chr08	irgsp1_rep	CDS	23291630	23291731	.	+	2	Parent=Os08t0473200-00
Chr08	irgsp1_rep	CDS	23292421	23292792	.	+	2	Parent=Os08t0473200-00
Chr08	irgsp1_rep	CDS	23292877	23293010	.	+	2	Parent=Os08t0473200-00
Chr08	irgsp1_rep	CDS	23293212	23293430	.	+	0	Parent=Os08t0473200-00
Chr08	irgsp1_rep	three_prime_UTR	23293431	23293527	.	+	.	Parent=Os08t0473200-00
Chr08	irgsp1_rep	three_prime_UTR	23293665	23293871	.	+	.	Parent=Os08t0473200-00
Chr08	irgsp1_rep	mRNA	23335167	23337070	.	+	.	ID=Os08t0473600-01;Name=Os08t0473600-01;Locus_id=Os08g0473600;CGSNL Gene Symbol=AMY3E;CGSNL Gene Name=ALPHA-AMYLASE 3E;Oryzabase Gene Symbol Synonym(s)=Amy3D/E*(RAmy3D/E)%2C alpha Amy8%2C alphaAmy8%2C AmyII-3%2C AMY1.4%2C Amy3E%2C Amy3D/E*%2C RAmy3D/E%2C Amy9%2C RAmy3E%2C alphaAmy8-C%2C AMY3E/AMY1.4;Oryzabase Gene Name Synonym(s)=Alpha-amylase3E%2C Alpha-amylase isozyme 3E precursor%2C Alpha-amylase isozyme 3E%2C Alpha-amylase-3E%2C Amylase-9%2C Alpha-amylase-3D;Note=Alpha-amylase isozyme 3E precursor (EC 3.2.1.1) (1%2C4-alpha-D-glucan glucanohydrolase).;Transcript_evidence=AK103413 (DDBJ%2C Best hit),AK064300 (DDBJ%2C Best hit),AK106526 (DDBJ%2C Best hit);ORF_evidence=P27934 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: alpha-amylase activity (GO:0004556),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 13 (IPR006046),Glycosyl hydrolase%2C family 13%2C catalytic domain (IPR006047),Glycosyl hydrolase%2C family 13%2C subfamily%2C catalytic domain (IPR006589),Alpha-amylase%2C C-terminal beta-sheet (IPR012850),Alpha-amylase%2C plant (IPR013775),Glycosyl hydrolase%2C family 13%2C all-beta (IPR013780),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Alpha amylase (IPR015902),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J033128G11,002-107-A12,002-107-D12;Oryzabase=6859;Expression=AK103413;TENOR=Os08t0473600-01;KEGG=Os08t0473600-01 (EC:3.2.1.1)
Chr08	irgsp1_rep	five_prime_UTR	23335167	23335296	.	+	.	Parent=Os08t0473600-01
Chr08	irgsp1_rep	CDS	23335297	23335386	.	+	0	Parent=Os08t0473600-01
Chr08	irgsp1_rep	CDS	23335530	23336468	.	+	0	Parent=Os08t0473600-01
Chr08	irgsp1_rep	CDS	23336554	23336838	.	+	0	Parent=Os08t0473600-01
Chr08	irgsp1_rep	three_prime_UTR	23336839	23337070	.	+	.	Parent=Os08t0473600-01
Chr08	irgsp1_rep	mRNA	23335169	23337076	.	+	.	ID=Os08t0473600-02;Name=Os08t0473600-02;Locus_id=Os08g0473600;CGSNL Gene Symbol=AMY3E;CGSNL Gene Name=ALPHA-AMYLASE 3E;Oryzabase Gene Symbol Synonym(s)=Amy3D/E*(RAmy3D/E)%2C alpha Amy8%2C alphaAmy8%2C AmyII-3%2C AMY1.4%2C Amy3E%2C Amy3D/E*%2C RAmy3D/E%2C Amy9%2C RAmy3E%2C alphaAmy8-C%2C AMY3E/AMY1.4;Oryzabase Gene Name Synonym(s)=Alpha-amylase3E%2C Alpha-amylase isozyme 3E precursor%2C Alpha-amylase isozyme 3E%2C Alpha-amylase-3E%2C Amylase-9%2C Alpha-amylase-3D;Note=Similar to Isoform 2 of Alpha-amylase isozyme 3E.;Transcript_evidence=AK064071 (DDBJ%2C Best hit);ORF_evidence=P27934-2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: cation binding (GO:0043169);InterPro=Glycosyl hydrolase%2C family 13%2C catalytic domain (IPR006047),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Alpha amylase (IPR015902),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-125-G11;Oryzabase=6859;Expression=AK064071;TENOR=Os08t0473600-02;KEGG=Os08t0473600-02 (EC:3.2.1.1)
Chr08	irgsp1_rep	five_prime_UTR	23335169	23335296	.	+	.	Parent=Os08t0473600-02
Chr08	irgsp1_rep	CDS	23335297	23335386	.	+	0	Parent=Os08t0473600-02
Chr08	irgsp1_rep	CDS	23335530	23336104	.	+	0	Parent=Os08t0473600-02
Chr08	irgsp1_rep	CDS	23336319	23336355	.	+	1	Parent=Os08t0473600-02
Chr08	irgsp1_rep	three_prime_UTR	23336356	23336468	.	+	.	Parent=Os08t0473600-02
Chr08	irgsp1_rep	three_prime_UTR	23336554	23337076	.	+	.	Parent=Os08t0473600-02
Chr08	irgsp1_rep	mRNA	23338605	23339985	.	-	.	ID=Os08t0473650-01;Name=Os08t0473650-01;Locus_id=Os08g0473650;Note=Conserved hypothetical protein.;Transcript_evidence=AK241870 (DDBJ%2C Best hit);ORF_evidence=NP_001175621.1 (RefSeq);NIAS_FLcDNA=J065217M14;TENOR=Os08t0473650-01;KEGG=Os08t0473650-01
Chr08	irgsp1_rep	five_prime_UTR	23339332	23339985	.	-	.	Parent=Os08t0473650-01
Chr08	irgsp1_rep	five_prime_UTR	23339062	23339246	.	-	.	Parent=Os08t0473650-01
Chr08	irgsp1_rep	CDS	23338732	23339061	.	-	0	Parent=Os08t0473650-01
Chr08	irgsp1_rep	three_prime_UTR	23338605	23338731	.	-	.	Parent=Os08t0473650-01
Chr08	irgsp1_rep	mRNA	23340677	23342603	.	-	.	ID=Os08t0473800-01;Name=Os08t0473800-01;Locus_id=Os08g0473800;Note=Similar to Alpha-amylase isozyme 3D precursor (EC 3.2.1.1) (1%2C4-alpha-D-glucan glucanohydrolase).;Transcript_evidence=AK064124 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-102-D04;Expression=AK064124;TENOR=Os08t0473800-01;KEGG=Os08t0473800-01 (EC:3.2.1.1)
Chr08	irgsp1_rep	five_prime_UTR	23342602	23342603	.	-	.	Parent=Os08t0473800-01
Chr08	irgsp1_rep	CDS	23341639	23342601	.	-	0	Parent=Os08t0473800-01
Chr08	irgsp1_rep	three_prime_UTR	23340677	23341380	.	-	.	Parent=Os08t0473800-01
Chr08	irgsp1_rep	mRNA	23341289	23343273	.	+	.	ID=Os08t0473900-01;Name=Os08t0473900-01;Locus_id=Os08g0473900;CGSNL Gene Symbol=AMY3D;CGSNL Gene Name=ALPHA-AMYLASE 3D;Oryzabase Gene Symbol Synonym(s)=Amy3D/E*(RAmy3D/E)%2C alpha Amy3%2C AmyII-4%2C AMY1.3%2C Amy3D%2C Amy3D/E*%2C RAmy3D/E%2C Amy3D_E%2C Amy8%2C aAmy3%2C RAmy3D%2C OsAmy3D%2C alphaAmy3;Oryzabase Gene Name Synonym(s)=Alpha-amylase3D%2C Alpha-amylase isozyme 3D precursor%2C Alpha-amylase isozyme 3D%2C Alpha-amylase-3D%2C Amylase-8;Note=Alpha-amylase isozyme 3D precursor (EC 3.2.1.1) (1%2C4-alpha-D-glucan glucanohydrolase).;Transcript_evidence=AK073487 (DDBJ%2C Best hit);ORF_evidence=A3BU21 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: alpha-amylase activity (GO:0004556),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 13 (IPR006046),Glycosyl hydrolase%2C family 13%2C catalytic domain (IPR006047),Glycosyl hydrolase%2C family 13%2C subfamily%2C catalytic domain (IPR006589),Alpha-amylase%2C C-terminal beta-sheet (IPR012850),Alpha-amylase%2C plant (IPR013775),Glycosyl hydrolase%2C family 13%2C all-beta (IPR013780),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Alpha amylase (IPR015902),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J033041J03;Oryzabase=6858;Expression=AK073487;TENOR=Os08t0473900-01;KEGG=Os08t0473900-01 (EC:3.2.1.1)
Chr08	irgsp1_rep	five_prime_UTR	23341289	23341328	.	+	.	Parent=Os08t0473900-01
Chr08	irgsp1_rep	CDS	23341329	23341538	.	+	0	Parent=Os08t0473900-01
Chr08	irgsp1_rep	CDS	23341663	23342601	.	+	0	Parent=Os08t0473900-01
Chr08	irgsp1_rep	CDS	23342690	23342971	.	+	0	Parent=Os08t0473900-01
Chr08	irgsp1_rep	three_prime_UTR	23342972	23343273	.	+	.	Parent=Os08t0473900-01
Chr08	irgsp1_rep	mRNA	23341357	23343299	.	+	.	ID=Os08t0473900-02;Name=Os08t0473900-02;Locus_id=Os08g0473900;CGSNL Gene Symbol=AMY3D;CGSNL Gene Name=ALPHA-AMYLASE 3D;Oryzabase Gene Symbol Synonym(s)=Amy3D/E*(RAmy3D/E)%2C alpha Amy3%2C AmyII-4%2C AMY1.3%2C Amy3D%2C Amy3D/E*%2C RAmy3D/E%2C Amy3D_E%2C Amy8%2C aAmy3%2C RAmy3D%2C OsAmy3D%2C alphaAmy3;Oryzabase Gene Name Synonym(s)=Alpha-amylase3D%2C Alpha-amylase isozyme 3D precursor%2C Alpha-amylase isozyme 3D%2C Alpha-amylase-3D%2C Amylase-8;Note=Similar to Alpha amylase isozyme 3D.;Transcript_evidence=AK119761 (DDBJ%2C Best hit);ORF_evidence=A3BU21 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: alpha-amylase activity (GO:0004556),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 13 (IPR006046),Glycosyl hydrolase%2C family 13%2C catalytic domain (IPR006047),Glycosyl hydrolase%2C family 13%2C subfamily%2C catalytic domain (IPR006589),Alpha-amylase%2C C-terminal beta-sheet (IPR012850),Alpha-amylase%2C plant (IPR013775),Glycosyl hydrolase%2C family 13%2C all-beta (IPR013780),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Alpha amylase (IPR015902),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=002-171-G03;Oryzabase=6858;Expression=AK119761;TENOR=Os08t0473900-02;KEGG=Os08t0473900-02
Chr08	irgsp1_rep	five_prime_UTR	23341357	23341448	.	+	.	Parent=Os08t0473900-02
Chr08	irgsp1_rep	CDS	23341449	23341538	.	+	0	Parent=Os08t0473900-02
Chr08	irgsp1_rep	CDS	23341663	23342601	.	+	0	Parent=Os08t0473900-02
Chr08	irgsp1_rep	CDS	23342690	23342971	.	+	0	Parent=Os08t0473900-02
Chr08	irgsp1_rep	three_prime_UTR	23342972	23343299	.	+	.	Parent=Os08t0473900-02
Chr08	irgsp1_rep	mRNA	23341357	23343240	.	+	.	ID=Os08t0473900-03;Name=Os08t0473900-03;Locus_id=Os08g0473900;CGSNL Gene Symbol=AMY3D;CGSNL Gene Name=ALPHA-AMYLASE 3D;Oryzabase Gene Symbol Synonym(s)=Amy3D/E*(RAmy3D/E)%2C alpha Amy3%2C AmyII-4%2C AMY1.3%2C Amy3D%2C Amy3D/E*%2C RAmy3D/E%2C Amy3D_E%2C Amy8%2C aAmy3%2C RAmy3D%2C OsAmy3D%2C alphaAmy3;Oryzabase Gene Name Synonym(s)=Alpha-amylase3D%2C Alpha-amylase isozyme 3D precursor%2C Alpha-amylase isozyme 3D%2C Alpha-amylase-3D%2C Amylase-8;Note=Similar to Alpha amylase isozyme 3D.;Transcript_evidence=AK119561 (DDBJ%2C Best hit);ORF_evidence=A3BU21 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 13 (IPR006046),Glycosyl hydrolase%2C family 13%2C catalytic domain (IPR006047),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Alpha amylase (IPR015902),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=002-113-B09;Oryzabase=6858;Expression=AK119561;TENOR=Os08t0473900-03;KEGG=Os08t0473900-03
Chr08	irgsp1_rep	five_prime_UTR	23341357	23341448	.	+	.	Parent=Os08t0473900-03
Chr08	irgsp1_rep	CDS	23341449	23341538	.	+	0	Parent=Os08t0473900-03
Chr08	irgsp1_rep	CDS	23341663	23342643	.	+	0	Parent=Os08t0473900-03
Chr08	irgsp1_rep	three_prime_UTR	23342644	23343240	.	+	.	Parent=Os08t0473900-03
Chr08	irgsp1_rep	mRNA	23353856	23354936	.	+	.	ID=Os08t0474000-01;Name=Os08t0474000-01;Locus_id=Os08g0474000;CGSNL Gene Symbol=ERF104;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 104;Oryzabase Gene Symbol Synonym(s)=DERF3%2C OsDERF3%2C OsERF#104%2C OsERF104%2C AP2/EREBP#152%2C AP2/EREBP152;Oryzabase Gene Name Synonym(s)=drought-responsive ethylene response factor 3%2C drought-responsive ERF 3%2C ethylene response factor 104%2C APETALA2/ethylene-responsive element binding protein 152;Note=Similar to AP2 domain containing protein RAP2.6 (Fragment).;Transcript_evidence=AK062882 (DDBJ%2C Best hit);ORF_evidence=NP_001149730.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=001-108-D06;Oryzabase=9689;Expression=AK062882;TENOR=Os08t0474000-01;KEGG=Os08t0474000-01
Chr08	irgsp1_rep	five_prime_UTR	23353856	23353857	.	+	.	Parent=Os08t0474000-01
Chr08	irgsp1_rep	CDS	23353858	23354019	.	+	0	Parent=Os08t0474000-01
Chr08	irgsp1_rep	CDS	23354267	23354764	.	+	0	Parent=Os08t0474000-01
Chr08	irgsp1_rep	three_prime_UTR	23354765	23354936	.	+	.	Parent=Os08t0474000-01
Chr08	irgsp1_rep	mRNA	23376142	23376787	.	+	.	ID=Os08t0474100-00;Name=Os08t0474100-00;Locus_id=Os08g0474100;Oryzabase Gene Name Synonym(s)=SG1-related protein;Note=Hypothetical conserved gene.;Transcript_evidence=EU959408 (DDBJ);ORF_evidence=NP_001062027.2 (RefSeq);Oryzabase=20511;TENOR=Os08t0474100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	23376142	23376142	.	+	.	Parent=Os08t0474100-00
Chr08	irgsp1_rep	CDS	23376143	23376787	.	+	0	Parent=Os08t0474100-00
Chr08	irgsp1_rep	mRNA	23381803	23383437	.	+	.	ID=Os08t0474400-00;Name=Os08t0474400-00;Locus_id=Os08g0474400;Oryzabase Gene Symbol Synonym(s)=OsFbox456%2C Fbox456%2C Os_F0543;Oryzabase Gene Name Synonym(s)=F-box protein 456;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001175623.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810);Oryzabase=17226;TENOR=Os08t0474400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	23381803	23383437	.	+	0	Parent=Os08t0474400-00
Chr08	irgsp1_rep	mRNA	23384707	23385710	.	-	.	ID=Os08t0474500-01;Name=Os08t0474500-01;Locus_id=Os08g0474500;Note=Conserved hypothetical protein.;Transcript_evidence=AK111147 (DDBJ%2C Best hit);ORF_evidence=A2YW72 (UniProt);NIAS_FLcDNA=002-176-E09;Expression=AK111147;TENOR=Os08t0474500-01;KEGG=Os08t0474500-01
Chr08	irgsp1_rep	five_prime_UTR	23385606	23385710	.	-	.	Parent=Os08t0474500-01
Chr08	irgsp1_rep	CDS	23384862	23385605	.	-	0	Parent=Os08t0474500-01
Chr08	irgsp1_rep	three_prime_UTR	23384707	23384861	.	-	.	Parent=Os08t0474500-01
Chr08	irgsp1_rep	mRNA	23386923	23388629	.	+	.	ID=Os08t0474600-01;Name=Os08t0474600-01;Locus_id=Os08g0474600;Oryzabase Gene Symbol Synonym(s)=OsDjC63;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C63;Note=Heat shock protein DnaJ%2C N-terminal domain containing protein.;Transcript_evidence=AK101574 (DDBJ%2C Best hit);ORF_evidence=NP_001151144.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Zinc finger%2C DPH-type (IPR007872),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=J033050J19;Oryzabase=12220;Expression=AK101574;TENOR=Os08t0474600-01;KEGG=Os08t0474600-01
Chr08	irgsp1_rep	five_prime_UTR	23386923	23388095	.	+	.	Parent=Os08t0474600-01
Chr08	irgsp1_rep	CDS	23388096	23388620	.	+	0	Parent=Os08t0474600-01
Chr08	irgsp1_rep	three_prime_UTR	23388621	23388629	.	+	.	Parent=Os08t0474600-01
Chr08	irgsp1_rep	mRNA	23390712	23402922	.	+	.	ID=Os08t0474700-01;Name=Os08t0474700-01;Locus_id=Os08g0474700;Note=Similar to COPII subunit Sec23 (Fragment).;Transcript_evidence=AK064878 (DDBJ%2C Best hit);ORF_evidence=O23275 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888),Cellular Component: COPII vesicle coat (GO:0030127),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C Sec23/Sec24-type (IPR006895),Sec23/Sec24%2C trunk domain (IPR006896),Sec23/Sec24%2C helical domain (IPR006900),Gelsolin domain (IPR007123),Sec23/Sec24 beta-sandwich (IPR012990);NIAS_FLcDNA=J013000J20;Expression=AK064878;TENOR=Os08t0474700-01;KEGG=Os08t0474700-01
Chr08	irgsp1_rep	five_prime_UTR	23390712	23390854	.	+	.	Parent=Os08t0474700-01
Chr08	irgsp1_rep	five_prime_UTR	23391348	23391438	.	+	.	Parent=Os08t0474700-01
Chr08	irgsp1_rep	CDS	23391439	23391948	.	+	0	Parent=Os08t0474700-01
Chr08	irgsp1_rep	CDS	23392039	23392254	.	+	0	Parent=Os08t0474700-01
Chr08	irgsp1_rep	CDS	23392389	23392562	.	+	0	Parent=Os08t0474700-01
Chr08	irgsp1_rep	CDS	23393392	23393553	.	+	0	Parent=Os08t0474700-01
Chr08	irgsp1_rep	CDS	23398537	23398679	.	+	0	Parent=Os08t0474700-01
Chr08	irgsp1_rep	CDS	23399106	23399181	.	+	1	Parent=Os08t0474700-01
Chr08	irgsp1_rep	CDS	23399278	23399453	.	+	0	Parent=Os08t0474700-01
Chr08	irgsp1_rep	CDS	23399537	23399618	.	+	1	Parent=Os08t0474700-01
Chr08	irgsp1_rep	CDS	23399880	23399957	.	+	0	Parent=Os08t0474700-01
Chr08	irgsp1_rep	CDS	23400766	23400927	.	+	0	Parent=Os08t0474700-01
Chr08	irgsp1_rep	CDS	23401221	23401484	.	+	0	Parent=Os08t0474700-01
Chr08	irgsp1_rep	CDS	23401939	23402043	.	+	0	Parent=Os08t0474700-01
Chr08	irgsp1_rep	CDS	23402545	23402688	.	+	0	Parent=Os08t0474700-01
Chr08	irgsp1_rep	three_prime_UTR	23402689	23402922	.	+	.	Parent=Os08t0474700-01
Chr08	irgsp1_rep	mRNA	23394881	23405146	.	-	.	ID=Os08t0474800-01;Name=Os08t0474800-01;Locus_id=Os08g0474800;Note=Conserved hypothetical protein.;Transcript_evidence=AK242052 (DDBJ%2C Best hit);ORF_evidence=NP_001175624.1 (RefSeq);NIAS_FLcDNA=J075122O14;TENOR=Os08t0474800-01;KEGG=Os08t0474800-01
Chr08	irgsp1_rep	five_prime_UTR	23405145	23405146	.	-	.	Parent=Os08t0474800-01
Chr08	irgsp1_rep	CDS	23404934	23405144	.	-	0	Parent=Os08t0474800-01
Chr08	irgsp1_rep	CDS	23395796	23395857	.	-	2	Parent=Os08t0474800-01
Chr08	irgsp1_rep	three_prime_UTR	23395763	23395795	.	-	.	Parent=Os08t0474800-01
Chr08	irgsp1_rep	three_prime_UTR	23394881	23395571	.	-	.	Parent=Os08t0474800-01
Chr08	irgsp1_rep	mRNA	23403049	23404168	.	-	.	ID=Os08t0474866-00;Name=Os08t0474866-00;Locus_id=Os08g0474866;Note=Similar to gibberellin receptor GID1L2.;Transcript_evidence=AK356161 (DDBJ);ORF_evidence=NP_001151232.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Alpha/beta hydrolase fold-3 (IPR013094);TENOR=Os08t0474866-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	23404162	23404168	.	-	.	Parent=Os08t0474866-00
Chr08	irgsp1_rep	CDS	23403049	23404161	.	-	0	Parent=Os08t0474866-00
Chr08	irgsp1_rep	mRNA	23408421	23409662	.	-	.	ID=Os08t0475000-00;Name=Os08t0475000-00;Locus_id=Os08g0475000;Note=Lipase%2C GDXG%2C active site domain containing protein.;Transcript_evidence=CT836038 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Lipase%2C GDXG%2C active site (IPR002168),Alpha/beta hydrolase fold-3 (IPR013094);TENOR=Os08t0475000-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	23408631	23409662	.	-	0	Parent=Os08t0475000-00
Chr08	irgsp1_rep	three_prime_UTR	23408421	23408630	.	-	.	Parent=Os08t0475000-00
Chr08	irgsp1_rep	mRNA	23411672	23412899	.	-	.	ID=Os08t0475100-01;Name=Os08t0475100-01;Locus_id=Os08g0475100;Note=Alpha/beta hydrolase fold-3 domain containing protein.;Transcript_evidence=AK105839 (DDBJ%2C Best hit);ORF_evidence=NP_001152298.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Lipase%2C GDXG%2C active site (IPR002168),Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=001-203-F05;Expression=AK105839;TENOR=Os08t0475100-01;KEGG=Os08t0475100-01
Chr08	irgsp1_rep	five_prime_UTR	23412838	23412899	.	-	.	Parent=Os08t0475100-01
Chr08	irgsp1_rep	CDS	23411836	23412837	.	-	0	Parent=Os08t0475100-01
Chr08	irgsp1_rep	three_prime_UTR	23411672	23411835	.	-	.	Parent=Os08t0475100-01
Chr08	irgsp1_rep	mRNA	23418742	23420164	.	+	.	ID=Os08t0475400-02;Name=Os08t0475400-02;Locus_id=Os08g0475400;Note=Alpha/beta hydrolase fold-3 domain containing protein.;Transcript_evidence=AK060706 (DDBJ%2C Best hit),AK073975 (DDBJ%2C Best hit);ORF_evidence=NP_001150584.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=001-030-H02,J033072F03;Expression=AK060706;TENOR=Os08t0475400-02;KEGG=Os08t0475400-02
Chr08	irgsp1_rep	five_prime_UTR	23418742	23418822	.	+	.	Parent=Os08t0475400-02
Chr08	irgsp1_rep	CDS	23418823	23419806	.	+	0	Parent=Os08t0475400-02
Chr08	irgsp1_rep	three_prime_UTR	23419807	23420164	.	+	.	Parent=Os08t0475400-02
Chr08	irgsp1_rep	mRNA	23425460	23425905	.	+	.	ID=Os08t0475500-01;Name=Os08t0475500-01;Locus_id=Os08g0475500;RAP-DB Gene Symbol Synonym(s)=OsCEP6%2C OsCEP6.1;RAP-DB Gene Name Synonym(s)=C-TERMINALLY ENCODED PEPTIDE 6;Oryzabase Gene Symbol Synonym(s)=OsCEP6%2C CEP6%2C OsCEP6.1%2C CEP6.1;Oryzabase Gene Name Synonym(s)=C-TERMINALLY ENCODED PEPTIDE 6;Note=C-terminally encoded peptide%2C Regulation of panicle and grain development%2C Regulation of root and seedling growth;Transcript_evidence=EU971868;ORF_evidence=Q6ZDG2;Manual Curation=June 16%2C 2017;Literature_PMID=26973672,25287121;Oryzabase=18602;TENOR=Os08t0475500-00;KEGG=Os08t0475500-00
Chr08	irgsp1_rep	five_prime_UTR	23425460	23425535	.	+	.	Parent=Os08t0475500-01
Chr08	irgsp1_rep	CDS	23425536	23425856	.	+	0	Parent=Os08t0475500-01
Chr08	irgsp1_rep	three_prime_UTR	23425857	23425905	.	+	.	Parent=Os08t0475500-01
Chr08	irgsp1_rep	mRNA	23447612	23450237	.	+	.	ID=Os08t0476000-01;Name=Os08t0476000-01;Locus_id=Os08g0476000;Note=Conserved hypothetical protein.;Transcript_evidence=AK106668 (DDBJ%2C Best hit);ORF_evidence=B9G1E5 (UniProt);NIAS_FLcDNA=002-113-H09;TENOR=Os08t0476000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	23447612	23447725	.	+	.	Parent=Os08t0476000-01
Chr08	irgsp1_rep	CDS	23447726	23447770	.	+	0	Parent=Os08t0476000-01
Chr08	irgsp1_rep	CDS	23447877	23448002	.	+	0	Parent=Os08t0476000-01
Chr08	irgsp1_rep	CDS	23448115	23448231	.	+	0	Parent=Os08t0476000-01
Chr08	irgsp1_rep	CDS	23448357	23448752	.	+	0	Parent=Os08t0476000-01
Chr08	irgsp1_rep	CDS	23448827	23449183	.	+	0	Parent=Os08t0476000-01
Chr08	irgsp1_rep	three_prime_UTR	23449184	23449200	.	+	.	Parent=Os08t0476000-01
Chr08	irgsp1_rep	three_prime_UTR	23449329	23449428	.	+	.	Parent=Os08t0476000-01
Chr08	irgsp1_rep	three_prime_UTR	23449820	23449902	.	+	.	Parent=Os08t0476000-01
Chr08	irgsp1_rep	three_prime_UTR	23450054	23450237	.	+	.	Parent=Os08t0476000-01
Chr08	irgsp1_rep	mRNA	23450412	23451554	.	-	.	ID=Os08t0476050-01;Name=Os08t0476050-01;Locus_id=Os08g0476050;Note=Hypothetical conserved gene.;Transcript_evidence=AK241864 (DDBJ%2C Best hit);ORF_evidence=Q2QPY4 (UniProt);NIAS_FLcDNA=J065217G23;TENOR=Os08t0476050-01;KEGG=Os08t0476050-01
Chr08	irgsp1_rep	five_prime_UTR	23451318	23451554	.	-	.	Parent=Os08t0476050-01
Chr08	irgsp1_rep	CDS	23451018	23451317	.	-	0	Parent=Os08t0476050-01
Chr08	irgsp1_rep	three_prime_UTR	23450412	23451017	.	-	.	Parent=Os08t0476050-01
Chr08	irgsp1_rep	mRNA	23450766	23452993	.	+	.	ID=Os08t0476100-01;Name=Os08t0476100-01;Locus_id=Os08g0476100;Note=Domain of unknown function DUF547 domain containing protein.;Transcript_evidence=AK066585 (DDBJ%2C Best hit);ORF_evidence=NP_001062039.1 (RefSeq);InterPro=Domain of unknown function DUF547 (IPR006869);NIAS_FLcDNA=J013074F07;Expression=AK066585;TENOR=Os08t0476100-01;KEGG=Os08t0476100-01
Chr08	irgsp1_rep	five_prime_UTR	23450766	23451617	.	+	.	Parent=Os08t0476100-01
Chr08	irgsp1_rep	CDS	23451618	23451764	.	+	0	Parent=Os08t0476100-01
Chr08	irgsp1_rep	CDS	23452527	23452829	.	+	0	Parent=Os08t0476100-01
Chr08	irgsp1_rep	three_prime_UTR	23452830	23452993	.	+	.	Parent=Os08t0476100-01
Chr08	irgsp1_rep	mRNA	23463936	23468305	.	+	.	ID=Os08t0476300-01;Name=Os08t0476300-01;Locus_id=Os08g0476300;Oryzabase Gene Symbol Synonym(s)=EIP11;Oryzabase Gene Name Synonym(s)=EBR1-interacting protein 11;Note=Glucose/ribitol dehydrogenase family protein.;Transcript_evidence=AK071937 (DDBJ%2C Best hit);ORF_evidence=XP_002877750.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013079C07;Oryzabase=21997;Expression=AK071937;TENOR=Os08t0476300-01;KEGG=Os08t0476300-01
Chr08	irgsp1_rep	five_prime_UTR	23463936	23464135	.	+	.	Parent=Os08t0476300-01
Chr08	irgsp1_rep	CDS	23464136	23464273	.	+	0	Parent=Os08t0476300-01
Chr08	irgsp1_rep	CDS	23464363	23464644	.	+	0	Parent=Os08t0476300-01
Chr08	irgsp1_rep	CDS	23464739	23464832	.	+	0	Parent=Os08t0476300-01
Chr08	irgsp1_rep	CDS	23464936	23465047	.	+	2	Parent=Os08t0476300-01
Chr08	irgsp1_rep	CDS	23467774	23467921	.	+	1	Parent=Os08t0476300-01
Chr08	irgsp1_rep	three_prime_UTR	23467922	23468305	.	+	.	Parent=Os08t0476300-01
Chr08	irgsp1_rep	mRNA	23464000	23468392	.	+	.	ID=Os08t0476300-02;Name=Os08t0476300-02;Locus_id=Os08g0476300;Oryzabase Gene Symbol Synonym(s)=EIP11;Oryzabase Gene Name Synonym(s)=EBR1-interacting protein 11;Note=Glucose/ribitol dehydrogenase family protein.;Transcript_evidence=AK105359 (DDBJ%2C Best hit);ORF_evidence=XP_002877750.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-119-C12;Oryzabase=21997;Expression=AK105359;TENOR=Os08t0476300-02;KEGG=Os08t0476300-02
Chr08	irgsp1_rep	five_prime_UTR	23464000	23464135	.	+	.	Parent=Os08t0476300-02
Chr08	irgsp1_rep	CDS	23464136	23464273	.	+	0	Parent=Os08t0476300-02
Chr08	irgsp1_rep	CDS	23464363	23464644	.	+	0	Parent=Os08t0476300-02
Chr08	irgsp1_rep	CDS	23464739	23464832	.	+	0	Parent=Os08t0476300-02
Chr08	irgsp1_rep	CDS	23464936	23465047	.	+	2	Parent=Os08t0476300-02
Chr08	irgsp1_rep	CDS	23467774	23467921	.	+	1	Parent=Os08t0476300-02
Chr08	irgsp1_rep	three_prime_UTR	23467922	23468392	.	+	.	Parent=Os08t0476300-02
Chr08	irgsp1_rep	mRNA	23468908	23472607	.	-	.	ID=Os08t0476400-01;Name=Os08t0476400-01;Locus_id=Os08g0476400;Note=Similar to phosphoglycerate mutase gpmB.;Transcript_evidence=AK241011 (DDBJ%2C Best hit);ORF_evidence=NP_001150922.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Phosphoglycerate/bisphosphoglycerate mutase%2C active site (IPR001345),Histidine phosphatase superfamily%2C clade-1 (IPR013078);NIAS_FLcDNA=J065053K09;TENOR=Os08t0476400-01;KEGG=Os08t0476400-01 (EC:5.4.2.1)
Chr08	irgsp1_rep	five_prime_UTR	23472562	23472607	.	-	.	Parent=Os08t0476400-01
Chr08	irgsp1_rep	CDS	23472277	23472561	.	-	0	Parent=Os08t0476400-01
Chr08	irgsp1_rep	CDS	23471195	23471245	.	-	0	Parent=Os08t0476400-01
Chr08	irgsp1_rep	CDS	23471003	23471113	.	-	0	Parent=Os08t0476400-01
Chr08	irgsp1_rep	CDS	23470720	23470851	.	-	0	Parent=Os08t0476400-01
Chr08	irgsp1_rep	CDS	23469581	23469656	.	-	0	Parent=Os08t0476400-01
Chr08	irgsp1_rep	CDS	23469039	23469265	.	-	2	Parent=Os08t0476400-01
Chr08	irgsp1_rep	three_prime_UTR	23468908	23469038	.	-	.	Parent=Os08t0476400-01
Chr08	irgsp1_rep	mRNA	23475471	23476235	.	+	.	ID=Os08t0476600-00;Name=Os08t0476600-00;Locus_id=Os08g0476600;Note=Similar to plant-specific domain TIGR01570 family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001151676.1 (RefSeq);InterPro=Protein of unknown function DUF617%2C plant (IPR006460);TENOR=Os08t0476600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	23475471	23476235	.	+	0	Parent=Os08t0476600-00
Chr08	irgsp1_rep	mRNA	23475490	23476212	.	-	.	ID=Os08t0476650-00;Name=Os08t0476650-00;Locus_id=Os08g0476650;Note=Hypothetical protein.;Transcript_evidence=EU968656 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0476650-00
Chr08	irgsp1_rep	five_prime_UTR	23476010	23476212	.	-	.	Parent=Os08t0476650-00
Chr08	irgsp1_rep	CDS	23475490	23476009	.	-	0	Parent=Os08t0476650-00
Chr08	irgsp1_rep	mRNA	23485476	23485896	.	+	.	ID=Os08t0476700-01;Name=Os08t0476700-01;Locus_id=Os08g0476700;Note=Hypothetical gene.;Transcript_evidence=AK241805 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065209F11;TENOR=Os08t0476700-01;KEGG=Os08t0476700-01
Chr08	irgsp1_rep	five_prime_UTR	23485476	23485477	.	+	.	Parent=Os08t0476700-01
Chr08	irgsp1_rep	CDS	23485478	23485756	.	+	0	Parent=Os08t0476700-01
Chr08	irgsp1_rep	three_prime_UTR	23485757	23485896	.	+	.	Parent=Os08t0476700-01
Chr08	irgsp1_rep	mRNA	23491893	23494532	.	-	.	ID=Os08t0476900-01;Name=Os08t0476900-01;Locus_id=Os08g0476900;Oryzabase Gene Symbol Synonym(s)=OspPLAIIdelta%2C pPLAIIdelta;Oryzabase Gene Name Synonym(s)=Patatin-related phospholipase A II delta;Note=Similar to Patatin-like protein 1.;Transcript_evidence=AK101432 (DDBJ%2C Best hit);ORF_evidence=Q9FZ09 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: metabolic process (GO:0008152);InterPro=Patatin/Phospholipase A2-related (IPR002641),Acyl transferase/acyl hydrolase/lysophospholipase (IPR016035);NIAS_FLcDNA=J033038K22;Oryzabase=19863;Expression=AK101432;TENOR=Os08t0476900-01;KEGG=Os08t0476900-01
Chr08	irgsp1_rep	five_prime_UTR	23494408	23494532	.	-	.	Parent=Os08t0476900-01
Chr08	irgsp1_rep	CDS	23493826	23494407	.	-	0	Parent=Os08t0476900-01
Chr08	irgsp1_rep	CDS	23493569	23493730	.	-	0	Parent=Os08t0476900-01
Chr08	irgsp1_rep	CDS	23492103	23492651	.	-	0	Parent=Os08t0476900-01
Chr08	irgsp1_rep	three_prime_UTR	23491893	23492102	.	-	.	Parent=Os08t0476900-01
Chr08	irgsp1_rep	mRNA	23502960	23505306	.	-	.	ID=Os08t0477100-01;Name=Os08t0477100-01;Locus_id=Os08g0477100;Oryzabase Gene Symbol Synonym(s)=OspPLAIIepsilon%2C pPLAIIepsilon;Oryzabase Gene Name Synonym(s)=Patatin-related phospholipase A II epsilon;Note=Similar to Latex allergen.;Transcript_evidence=AK108679 (DDBJ%2C Best hit);ORF_evidence=Q9FZ09 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: metabolic process (GO:0008152);InterPro=Patatin/Phospholipase A2-related (IPR002641),Acyl transferase/acyl hydrolase/lysophospholipase (IPR016035);NIAS_FLcDNA=002-149-B01;Oryzabase=19864;Expression=AK108679;TENOR=Os08t0477100-01;KEGG=Os08t0477100-01
Chr08	irgsp1_rep	five_prime_UTR	23505125	23505306	.	-	.	Parent=Os08t0477100-01
Chr08	irgsp1_rep	CDS	23504715	23505124	.	-	0	Parent=Os08t0477100-01
Chr08	irgsp1_rep	CDS	23504426	23504603	.	-	1	Parent=Os08t0477100-01
Chr08	irgsp1_rep	CDS	23504175	23504336	.	-	0	Parent=Os08t0477100-01
Chr08	irgsp1_rep	CDS	23503183	23503728	.	-	0	Parent=Os08t0477100-01
Chr08	irgsp1_rep	three_prime_UTR	23502960	23503182	.	-	.	Parent=Os08t0477100-01
Chr08	irgsp1_rep	mRNA	23545539	23548630	.	-	.	ID=Os08t0477500-01;Name=Os08t0477500-01;Locus_id=Os08g0477500;Oryzabase Gene Symbol Synonym(s)=OspPLAIIzeta%2C pPLAIIzeta;Oryzabase Gene Name Synonym(s)=Patatin-related phospholipase A II zeta;Note=Similar to patatin class 1.;Transcript_evidence=AK243595 (DDBJ%2C Best hit);ORF_evidence=NP_001149326.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: metabolic process (GO:0008152);InterPro=Patatin/Phospholipase A2-related (IPR002641),Acyl transferase/acyl hydrolase/lysophospholipase (IPR016035);NIAS_FLcDNA=J100084C06;Oryzabase=19865;TENOR=Os08t0477500-01;KEGG=Os08t0477500-01
Chr08	irgsp1_rep	five_prime_UTR	23548541	23548630	.	-	.	Parent=Os08t0477500-01
Chr08	irgsp1_rep	CDS	23548397	23548540	.	-	0	Parent=Os08t0477500-01
Chr08	irgsp1_rep	CDS	23548123	23548301	.	-	0	Parent=Os08t0477500-01
Chr08	irgsp1_rep	CDS	23547763	23547952	.	-	1	Parent=Os08t0477500-01
Chr08	irgsp1_rep	CDS	23547009	23547305	.	-	0	Parent=Os08t0477500-01
Chr08	irgsp1_rep	three_prime_UTR	23546441	23547008	.	-	.	Parent=Os08t0477500-01
Chr08	irgsp1_rep	three_prime_UTR	23545539	23545992	.	-	.	Parent=Os08t0477500-01
Chr08	irgsp1_rep	mRNA	23551865	23554173	.	-	.	ID=Os08t0477600-01;Name=Os08t0477600-01;Locus_id=Os08g0477600;Note=Conserved hypothetical protein.;Transcript_evidence=AK069216 (DDBJ%2C Best hit);ORF_evidence=A3BU43 (UniProt);NIAS_FLcDNA=J023011K15;TENOR=Os08t0477600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	23554173	23554173	.	-	.	Parent=Os08t0477600-01
Chr08	irgsp1_rep	CDS	23553903	23554172	.	-	0	Parent=Os08t0477600-01
Chr08	irgsp1_rep	CDS	23552576	23553064	.	-	0	Parent=Os08t0477600-01
Chr08	irgsp1_rep	CDS	23552159	23552206	.	-	0	Parent=Os08t0477600-01
Chr08	irgsp1_rep	three_prime_UTR	23551865	23552158	.	-	.	Parent=Os08t0477600-01
Chr08	irgsp1_rep	mRNA	23561842	23566384	.	+	.	ID=Os08t0477800-01;Name=Os08t0477800-01;Locus_id=Os08g0477800;Note=PWWP domain containing protein.;Transcript_evidence=AK066304 (DDBJ%2C Best hit);ORF_evidence=B8BBS0 (UniProt);InterPro=PWWP (IPR000313);NIAS_FLcDNA=J013060B01;Expression=AK066304;TENOR=Os08t0477800-01;KEGG=Os08t0477800-01
Chr08	irgsp1_rep	five_prime_UTR	23561842	23561981	.	+	.	Parent=Os08t0477800-01
Chr08	irgsp1_rep	five_prime_UTR	23562222	23562237	.	+	.	Parent=Os08t0477800-01
Chr08	irgsp1_rep	CDS	23562238	23562381	.	+	0	Parent=Os08t0477800-01
Chr08	irgsp1_rep	CDS	23562698	23562783	.	+	0	Parent=Os08t0477800-01
Chr08	irgsp1_rep	CDS	23562869	23562911	.	+	1	Parent=Os08t0477800-01
Chr08	irgsp1_rep	CDS	23563897	23563953	.	+	0	Parent=Os08t0477800-01
Chr08	irgsp1_rep	CDS	23564037	23564094	.	+	0	Parent=Os08t0477800-01
Chr08	irgsp1_rep	CDS	23565009	23565856	.	+	2	Parent=Os08t0477800-01
Chr08	irgsp1_rep	CDS	23565945	23565977	.	+	0	Parent=Os08t0477800-01
Chr08	irgsp1_rep	three_prime_UTR	23565978	23566384	.	+	.	Parent=Os08t0477800-01
Chr08	irgsp1_rep	mRNA	23572583	23573388	.	+	.	ID=Os08t0477900-00;Name=Os08t0477900-00;Locus_id=Os08g0477900;Oryzabase Gene Symbol Synonym(s)=OsbHLH042%2C bHLH042;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 042;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=EU968808 (DDBJ);ORF_evidence=NP_001159035.1 (RefSeq);InterPro=Helix-loop-helix DNA-binding (IPR011598);Oryzabase=15333;TENOR=Os08t0477900-00;KEGG=Os08t0477900-00
Chr08	irgsp1_rep	five_prime_UTR	23572583	23572622	.	+	.	Parent=Os08t0477900-00
Chr08	irgsp1_rep	CDS	23572623	23572772	.	+	0	Parent=Os08t0477900-00
Chr08	irgsp1_rep	CDS	23572867	23573388	.	+	0	Parent=Os08t0477900-00
Chr08	irgsp1_rep	mRNA	23575567	23576307	.	+	.	ID=Os08t0478000-01;Name=Os08t0478000-01;Locus_id=Os08g0478000;Note=Similar to mucin-2.;Transcript_evidence=AK059493 (DDBJ%2C Best hit);ORF_evidence=B6SR31 (UniProt);NIAS_FLcDNA=001-028-H04;Expression=AK059493;TENOR=Os08t0478000-01;KEGG=Os08t0478000-01
Chr08	irgsp1_rep	five_prime_UTR	23575567	23575567	.	+	.	Parent=Os08t0478000-01
Chr08	irgsp1_rep	CDS	23575568	23576107	.	+	0	Parent=Os08t0478000-01
Chr08	irgsp1_rep	three_prime_UTR	23576108	23576307	.	+	.	Parent=Os08t0478000-01
Chr08	irgsp1_rep	mRNA	23575571	23576302	.	+	.	ID=Os08t0478000-02;Name=Os08t0478000-02;Locus_id=Os08g0478000;Note=Conserved hypothetical protein.;Transcript_evidence=AK099412 (DDBJ%2C Best hit);ORF_evidence=Q6ZJC6 (UniProt);NIAS_FLcDNA=J013004L21;TENOR=Os08t0478000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	23575571	23575642	.	+	.	Parent=Os08t0478000-02
Chr08	irgsp1_rep	CDS	23575643	23575686	.	+	0	Parent=Os08t0478000-02
Chr08	irgsp1_rep	CDS	23575767	23576100	.	+	1	Parent=Os08t0478000-02
Chr08	irgsp1_rep	three_prime_UTR	23576101	23576302	.	+	.	Parent=Os08t0478000-02
Chr08	irgsp1_rep	mRNA	23576748	23579088	.	-	.	ID=Os08t0478100-01;Name=Os08t0478100-01;Locus_id=Os08g0478100;Note=Uncharacterised protein family UPF0029%2C N-terminal domain containing protein.;Transcript_evidence=AK063259 (DDBJ%2C Best hit);ORF_evidence=B8BBS2 (UniProt);InterPro=Impact%2C N-terminal (IPR001498),Ribosomal protein S5 domain 2-type fold (IPR020568),Impact family (IPR023582);NIAS_FLcDNA=001-113-A04;Expression=AK063259;TENOR=Os08t0478100-01;KEGG=Os08t0478100-01
Chr08	irgsp1_rep	CDS	23578783	23579088	.	-	0	Parent=Os08t0478100-01
Chr08	irgsp1_rep	CDS	23578241	23578282	.	-	0	Parent=Os08t0478100-01
Chr08	irgsp1_rep	CDS	23578034	23578149	.	-	0	Parent=Os08t0478100-01
Chr08	irgsp1_rep	CDS	23577704	23577809	.	-	1	Parent=Os08t0478100-01
Chr08	irgsp1_rep	CDS	23577545	23577598	.	-	0	Parent=Os08t0478100-01
Chr08	irgsp1_rep	CDS	23577258	23577413	.	-	0	Parent=Os08t0478100-01
Chr08	irgsp1_rep	three_prime_UTR	23577182	23577257	.	-	.	Parent=Os08t0478100-01
Chr08	irgsp1_rep	three_prime_UTR	23576748	23577051	.	-	.	Parent=Os08t0478100-01
Chr08	irgsp1_rep	mRNA	23579296	23582145	.	-	.	ID=Os08t0478200-01;Name=Os08t0478200-01;Locus_id=Os08g0478200;Oryzabase Gene Symbol Synonym(s)=RMtATPd2%2C OsMtATPd2%2C MtATPd2;Oryzabase Gene Name Synonym(s)=mitochondrial ATP synthase d2;Note=Similar to ATP synthase D chain%2C mitochondrial (EC 3.6.3.14).;Transcript_evidence=AK068050 (DDBJ%2C Best hit);ORF_evidence=NP_001150316.1 (RefSeq);GO=Biological Process: ATP synthesis coupled proton transport (GO:0015986),Cellular Component: mitochondrial proton-transporting ATP synthase complex%2C coupling factor F(o) (GO:0000276),Molecular Function: hydrogen ion transmembrane transporter activity (GO:0015078);InterPro=ATPase%2C F0 complex%2C subunit D%2C mitochondrial (IPR008689);NIAS_FLcDNA=J013131P20;Oryzabase=14101;Expression=AK068050;TENOR=Os08t0478200-01;KEGG=Os08t0478200-01 (EC:3.6.3.14)
Chr08	irgsp1_rep	five_prime_UTR	23582035	23582145	.	-	.	Parent=Os08t0478200-01
Chr08	irgsp1_rep	CDS	23581861	23582034	.	-	0	Parent=Os08t0478200-01
Chr08	irgsp1_rep	CDS	23581121	23581202	.	-	0	Parent=Os08t0478200-01
Chr08	irgsp1_rep	CDS	23580064	23580128	.	-	2	Parent=Os08t0478200-01
Chr08	irgsp1_rep	CDS	23579823	23579909	.	-	0	Parent=Os08t0478200-01
Chr08	irgsp1_rep	CDS	23579598	23579699	.	-	0	Parent=Os08t0478200-01
Chr08	irgsp1_rep	three_prime_UTR	23579296	23579597	.	-	.	Parent=Os08t0478200-01
Chr08	irgsp1_rep	mRNA	23589354	23590687	.	-	.	ID=Os08t0478466-01;Name=Os08t0478466-01;Locus_id=Os08g0478466;Note=Protein of unknown function DUF296 domain containing protein.;Transcript_evidence=AK287800 (DDBJ%2C Best hit);ORF_evidence=NP_001152438.1 (RefSeq);GO=Molecular Function: DNA binding (GO:0003677);InterPro=Domain of unknown function DUF296 (IPR005175),Predicted AT-hook DNA-binding (IPR014476),AT hook%2C DNA-binding motif (IPR017956);NIAS_FLcDNA=J065176A13;TENOR=Os08t0478466-01;KEGG=Os08t0478466-01
Chr08	irgsp1_rep	five_prime_UTR	23590578	23590687	.	-	.	Parent=Os08t0478466-01
Chr08	irgsp1_rep	CDS	23589603	23590577	.	-	0	Parent=Os08t0478466-01
Chr08	irgsp1_rep	three_prime_UTR	23589354	23589602	.	-	.	Parent=Os08t0478466-01
Chr08	irgsp1_rep	mRNA	23593702	23601132	.	-	.	ID=Os08t0478500-01;Name=Os08t0478500-01;Locus_id=Os08g0478500;CGSNL Gene Symbol=UBP7-6;CGSNL Gene Name=UBIQUITIN-SPECIFIC PROCESSING PROTEASE 7-6;Oryzabase Gene Symbol Synonym(s)=OsUBP7-6%2C OsUBP17%2C UBP17;Oryzabase Gene Name Synonym(s)=ubiquitin-specific processing protease 7-6%2C Ubiquitin-specific protease 17;Note=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 family protein.;Transcript_evidence=AK099704 (DDBJ%2C Best hit);ORF_evidence=A2YWA2 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Molecular Function: ubiquitin thiolesterase activity (GO:0004221),Molecular Function: zinc ion binding (GO:0008270);InterPro=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (IPR001394),Zinc finger%2C MYND-type (IPR002893),Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2%2C conserved site (IPR018200);NIAS_FLcDNA=J013075H22;Oryzabase=22889;Expression=AK099704;TENOR=Os08t0478500-01;KEGG=Os08t0478500-01
Chr08	irgsp1_rep	five_prime_UTR	23600936	23601132	.	-	.	Parent=Os08t0478500-01
Chr08	irgsp1_rep	CDS	23600508	23600935	.	-	0	Parent=Os08t0478500-01
Chr08	irgsp1_rep	CDS	23598058	23598919	.	-	1	Parent=Os08t0478500-01
Chr08	irgsp1_rep	CDS	23597902	23597984	.	-	0	Parent=Os08t0478500-01
Chr08	irgsp1_rep	CDS	23597572	23597657	.	-	1	Parent=Os08t0478500-01
Chr08	irgsp1_rep	CDS	23597323	23597485	.	-	2	Parent=Os08t0478500-01
Chr08	irgsp1_rep	CDS	23596747	23596867	.	-	1	Parent=Os08t0478500-01
Chr08	irgsp1_rep	CDS	23596474	23596631	.	-	0	Parent=Os08t0478500-01
Chr08	irgsp1_rep	CDS	23595367	23595451	.	-	1	Parent=Os08t0478500-01
Chr08	irgsp1_rep	CDS	23594977	23595192	.	-	0	Parent=Os08t0478500-01
Chr08	irgsp1_rep	CDS	23594644	23594705	.	-	0	Parent=Os08t0478500-01
Chr08	irgsp1_rep	CDS	23593794	23594466	.	-	1	Parent=Os08t0478500-01
Chr08	irgsp1_rep	three_prime_UTR	23593702	23593793	.	-	.	Parent=Os08t0478500-01
Chr08	irgsp1_rep	mRNA	23599111	23599271	.	-	.	ID=Os08t0478566-00;Name=Os08t0478566-00;Locus_id=Os08g0478566;Note=Similar to Maturase K 2.;Transcript_evidence=AY964640 (DDBJ);ORF_evidence=C6ES29 (UniProt);TENOR=Os08t0478566-00
Chr08	irgsp1_rep	five_prime_UTR	23599248	23599271	.	-	.	Parent=Os08t0478566-00
Chr08	irgsp1_rep	CDS	23599116	23599247	.	-	0	Parent=Os08t0478566-00
Chr08	irgsp1_rep	three_prime_UTR	23599111	23599115	.	-	.	Parent=Os08t0478566-00
Chr08	irgsp1_rep	mRNA	23613110	23614397	.	-	.	ID=Os08t0478700-01;Name=Os08t0478700-01;Locus_id=Os08g0478700;Note=Similar to Mitochondrial uncoupling protein 4.;Transcript_evidence=AK058489 (DDBJ%2C Best hit);ORF_evidence=Q66PX4 (UniProt);InterPro=Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=001-016-D12;TENOR=Os08t0478700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	23614315	23614397	.	-	.	Parent=Os08t0478700-01
Chr08	irgsp1_rep	CDS	23614202	23614314	.	-	0	Parent=Os08t0478700-01
Chr08	irgsp1_rep	CDS	23613242	23613500	.	-	1	Parent=Os08t0478700-01
Chr08	irgsp1_rep	three_prime_UTR	23613110	23613241	.	-	.	Parent=Os08t0478700-01
Chr08	irgsp1_rep	mRNA	23623292	23628557	.	-	.	ID=Os08t0478800-01;Name=Os08t0478800-01;Locus_id=Os08g0478800;Note=Phosphoglucose isomerase (PGI) family protein.;Transcript_evidence=AK107494 (DDBJ%2C Best hit);ORF_evidence=A3BU52 (UniProt);GO=Biological Process: gluconeogenesis (GO:0006094),Biological Process: glycolysis (GO:0006096),Molecular Function: glucose-6-phosphate isomerase activity (GO:0004347);InterPro=Phosphoglucose isomerase (PGI) (IPR001672),Phosphoglucose isomerase%2C conserved site (IPR018189);NIAS_FLcDNA=002-129-D06;Expression=AK107494;TENOR=Os08t0478800-01;KEGG=Os08t0478800-01 (EC:5.3.1.9)
Chr08	irgsp1_rep	five_prime_UTR	23628533	23628557	.	-	.	Parent=Os08t0478800-01
Chr08	irgsp1_rep	CDS	23627987	23628532	.	-	0	Parent=Os08t0478800-01
Chr08	irgsp1_rep	CDS	23627339	23627461	.	-	0	Parent=Os08t0478800-01
Chr08	irgsp1_rep	CDS	23626740	23626838	.	-	0	Parent=Os08t0478800-01
Chr08	irgsp1_rep	CDS	23626573	23626656	.	-	0	Parent=Os08t0478800-01
Chr08	irgsp1_rep	CDS	23625899	23626042	.	-	0	Parent=Os08t0478800-01
Chr08	irgsp1_rep	CDS	23625730	23625795	.	-	0	Parent=Os08t0478800-01
Chr08	irgsp1_rep	CDS	23625533	23625601	.	-	0	Parent=Os08t0478800-01
Chr08	irgsp1_rep	CDS	23625279	23625362	.	-	0	Parent=Os08t0478800-01
Chr08	irgsp1_rep	CDS	23625062	23625114	.	-	0	Parent=Os08t0478800-01
Chr08	irgsp1_rep	CDS	23624823	23624961	.	-	1	Parent=Os08t0478800-01
Chr08	irgsp1_rep	CDS	23624572	23624728	.	-	0	Parent=Os08t0478800-01
Chr08	irgsp1_rep	CDS	23624402	23624480	.	-	2	Parent=Os08t0478800-01
Chr08	irgsp1_rep	CDS	23623713	23623779	.	-	1	Parent=Os08t0478800-01
Chr08	irgsp1_rep	CDS	23623486	23623623	.	-	0	Parent=Os08t0478800-01
Chr08	irgsp1_rep	three_prime_UTR	23623292	23623485	.	-	.	Parent=Os08t0478800-01
Chr08	irgsp1_rep	mRNA	23648009	23651073	.	+	.	ID=Os08t0479300-01;Name=Os08t0479300-01;Locus_id=Os08g0479300;CGSNL Gene Symbol=CYCD4%3B2;CGSNL Gene Name=CYCLIN-D4-2;Oryzabase Gene Symbol Synonym(s)=CycD4%3B2%2C CycD4%3Bos%3B2%2C Orysa%3BCycD4%3B2%2C Orysa%3BCYCD4%3B2;Oryzabase Gene Name Synonym(s)=D-type cyclin 4%3B2;Note=Cyclin%2C A/B/D/E domain containing protein.;Transcript_evidence=AK070025 (DDBJ%2C Best hit);ORF_evidence=Q4KYM5 (UniProt);GO=Biological Process: regulation of cyclin-dependent protein kinase activity (GO:0000079),Biological Process: regulation of cell cycle (GO:0051726),Cellular Component: nucleus (GO:0005634),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin%2C C-terminal (IPR004367),Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763),Cyclin A/B/D/E (IPR014400);NIAS_FLcDNA=J023039C11;Oryzabase=13267;Expression=AK070025;TENOR=Os08t0479300-01;KEGG=Os08t0479300-01
Chr08	irgsp1_rep	five_prime_UTR	23648009	23648130	.	+	.	Parent=Os08t0479300-01
Chr08	irgsp1_rep	CDS	23648131	23648487	.	+	0	Parent=Os08t0479300-01
Chr08	irgsp1_rep	CDS	23649110	23649196	.	+	0	Parent=Os08t0479300-01
Chr08	irgsp1_rep	CDS	23649305	23649403	.	+	0	Parent=Os08t0479300-01
Chr08	irgsp1_rep	CDS	23649497	23649698	.	+	0	Parent=Os08t0479300-01
Chr08	irgsp1_rep	CDS	23649811	23649932	.	+	2	Parent=Os08t0479300-01
Chr08	irgsp1_rep	CDS	23650184	23650468	.	+	0	Parent=Os08t0479300-01
Chr08	irgsp1_rep	three_prime_UTR	23650469	23651073	.	+	.	Parent=Os08t0479300-01
Chr08	irgsp1_rep	mRNA	23663492	23665382	.	-	.	ID=Os08t0479400-01;Name=Os08t0479400-01;Locus_id=Os08g0479400;RAP-DB Gene Symbol Synonym(s)=OsZHD2;RAP-DB Gene Name Synonym(s)=zinc finger homeodomain class homeobox transcription factor 2;CGSNL Gene Symbol=ZHD2;Oryzabase Gene Symbol Synonym(s)=OsZHD2;Oryzabase Gene Name Synonym(s)=zinc finger homeodomain class homeobox transcription factor 2;Note=Zinc-finger homeobox transcription factor%2C Promotion of root meristem activity%2C Ethylene biosynthesis;Transcript_evidence=AK109528;ORF_evidence=Q6ZB90;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeobox-like domain superfamily (IPR009057),ZF-HD homeobox protein%2C Cys/His-rich dimerisation domain (IPR006456),Homeodomain%2C ZF-HD class (IPR006455);NIAS_FLcDNA=002-116-C04;Manual Curation=May 26%2C 2020;Literature_PMID=32449922;Oryzabase=15615;Expression=AK109528;TENOR=Os08t0479400-01;KEGG=Os08t0479400-01
Chr08	irgsp1_rep	five_prime_UTR	23665290	23665382	.	-	.	Parent=Os08t0479400-01
Chr08	irgsp1_rep	CDS	23664417	23665289	.	-	0	Parent=Os08t0479400-01
Chr08	irgsp1_rep	three_prime_UTR	23663492	23664416	.	-	.	Parent=Os08t0479400-01
Chr08	irgsp1_rep	mRNA	23712632	23717520	.	+	.	ID=Os08t0480000-01;Name=Os08t0480000-01;Locus_id=Os08g0480000;Note=Multi antimicrobial extrusion protein MatE family protein.;Transcript_evidence=AK067748 (DDBJ%2C Best hit);ORF_evidence=B6SVP1 (UniProt);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);NIAS_FLcDNA=J013118K06;Expression=AK067748;TENOR=Os08t0480000-01;KEGG=Os08t0480000-01
Chr08	irgsp1_rep	five_prime_UTR	23712632	23712715	.	+	.	Parent=Os08t0480000-01
Chr08	irgsp1_rep	CDS	23712716	23713006	.	+	0	Parent=Os08t0480000-01
Chr08	irgsp1_rep	CDS	23715229	23715770	.	+	0	Parent=Os08t0480000-01
Chr08	irgsp1_rep	CDS	23715862	23715948	.	+	1	Parent=Os08t0480000-01
Chr08	irgsp1_rep	CDS	23716049	23716105	.	+	1	Parent=Os08t0480000-01
Chr08	irgsp1_rep	CDS	23716197	23716432	.	+	1	Parent=Os08t0480000-01
Chr08	irgsp1_rep	CDS	23716544	23716665	.	+	2	Parent=Os08t0480000-01
Chr08	irgsp1_rep	CDS	23716787	23716873	.	+	0	Parent=Os08t0480000-01
Chr08	irgsp1_rep	CDS	23716962	23717009	.	+	0	Parent=Os08t0480000-01
Chr08	irgsp1_rep	three_prime_UTR	23717010	23717520	.	+	.	Parent=Os08t0480000-01
Chr08	irgsp1_rep	mRNA	23712669	23716991	.	-	.	ID=Os08t0480050-00;Name=Os08t0480050-00;Locus_id=Os08g0480050;Note=Hypothetical protein.;Transcript_evidence=tplb0060k11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0480050-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	23716784	23716991	.	-	.	Parent=Os08t0480050-00
Chr08	irgsp1_rep	five_prime_UTR	23716544	23716662	.	-	.	Parent=Os08t0480050-00
Chr08	irgsp1_rep	five_prime_UTR	23716213	23716432	.	-	.	Parent=Os08t0480050-00
Chr08	irgsp1_rep	five_prime_UTR	23716042	23716117	.	-	.	Parent=Os08t0480050-00
Chr08	irgsp1_rep	five_prime_UTR	23715860	23715939	.	-	.	Parent=Os08t0480050-00
Chr08	irgsp1_rep	five_prime_UTR	23715465	23715765	.	-	.	Parent=Os08t0480050-00
Chr08	irgsp1_rep	CDS	23715228	23715464	.	-	0	Parent=Os08t0480050-00
Chr08	irgsp1_rep	CDS	23712669	23713005	.	-	0	Parent=Os08t0480050-00
Chr08	irgsp1_rep	mRNA	23717763	23722249	.	-	.	ID=Os08t0480100-01;Name=Os08t0480100-01;Locus_id=Os08g0480100;Note=Signal recognition particle receptor%2C alpha subunit%2C N-terminal domain containing protein.;Transcript_evidence=AK101591 (DDBJ%2C Best hit);ORF_evidence=NP_001130574.1 (RefSeq);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: SRP-dependent cotranslational protein targeting to membrane (GO:0006614),Biological Process: transport (GO:0006810),Biological Process: intracellular protein transport (GO:0006886),Cellular Component: signal recognition particle receptor complex (GO:0005785),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: GTPase activity (GO:0003924),Molecular Function: signal recognition particle binding (GO:0005047),Molecular Function: GTP binding (GO:0005525),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=Signal recognition particle%2C SRP54 subunit%2C GTPase (IPR000897),ATPase%2C AAA+ type%2C core (IPR003593),Signal recognition particle receptor%2C alpha subunit%2C N-terminal (IPR007222),Longin-like (IPR011012),Signal recognition particle%2C SRP54 subunit%2C helical bundle (IPR013822);NIAS_FLcDNA=J033051D02;Expression=AK101591;TENOR=Os08t0480100-01;KEGG=Os08t0480100-01
Chr08	irgsp1_rep	five_prime_UTR	23722112	23722249	.	-	.	Parent=Os08t0480100-01
Chr08	irgsp1_rep	five_prime_UTR	23721497	23721510	.	-	.	Parent=Os08t0480100-01
Chr08	irgsp1_rep	CDS	23720520	23721496	.	-	0	Parent=Os08t0480100-01
Chr08	irgsp1_rep	CDS	23719958	23720042	.	-	1	Parent=Os08t0480100-01
Chr08	irgsp1_rep	CDS	23719747	23719842	.	-	0	Parent=Os08t0480100-01
Chr08	irgsp1_rep	CDS	23719485	23719637	.	-	0	Parent=Os08t0480100-01
Chr08	irgsp1_rep	CDS	23719288	23719395	.	-	0	Parent=Os08t0480100-01
Chr08	irgsp1_rep	CDS	23718835	23718954	.	-	0	Parent=Os08t0480100-01
Chr08	irgsp1_rep	CDS	23718609	23718734	.	-	0	Parent=Os08t0480100-01
Chr08	irgsp1_rep	CDS	23718279	23718362	.	-	0	Parent=Os08t0480100-01
Chr08	irgsp1_rep	CDS	23718067	23718192	.	-	0	Parent=Os08t0480100-01
Chr08	irgsp1_rep	three_prime_UTR	23717763	23718066	.	-	.	Parent=Os08t0480100-01
Chr08	irgsp1_rep	mRNA	23717855	23722181	.	-	.	ID=Os08t0480100-02;Name=Os08t0480100-02;Locus_id=Os08g0480100;Note=Similar to predicted protein.;Transcript_evidence=AK065513 (DDBJ%2C Best hit);ORF_evidence=NP_001130574.1 (RefSeq);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: SRP-dependent cotranslational protein targeting to membrane (GO:0006614),Biological Process: transport (GO:0006810),Biological Process: intracellular protein transport (GO:0006886),Cellular Component: signal recognition particle receptor complex (GO:0005785),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: GTPase activity (GO:0003924),Molecular Function: signal recognition particle binding (GO:0005047),Molecular Function: GTP binding (GO:0005525),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=Signal recognition particle%2C SRP54 subunit%2C GTPase (IPR000897),ATPase%2C AAA+ type%2C core (IPR003593),Signal recognition particle receptor%2C alpha subunit%2C N-terminal (IPR007222),Longin-like (IPR011012),Signal recognition particle%2C SRP54 subunit%2C helical bundle (IPR013822);NIAS_FLcDNA=J013033N04;Expression=AK065513;TENOR=Os08t0480100-02;KEGG=Os08t0480100-02
Chr08	irgsp1_rep	five_prime_UTR	23722112	23722181	.	-	.	Parent=Os08t0480100-02
Chr08	irgsp1_rep	five_prime_UTR	23721497	23721510	.	-	.	Parent=Os08t0480100-02
Chr08	irgsp1_rep	CDS	23721395	23721496	.	-	0	Parent=Os08t0480100-02
Chr08	irgsp1_rep	CDS	23720520	23721352	.	-	0	Parent=Os08t0480100-02
Chr08	irgsp1_rep	CDS	23719958	23720042	.	-	1	Parent=Os08t0480100-02
Chr08	irgsp1_rep	CDS	23719747	23719842	.	-	0	Parent=Os08t0480100-02
Chr08	irgsp1_rep	CDS	23719485	23719637	.	-	0	Parent=Os08t0480100-02
Chr08	irgsp1_rep	CDS	23719288	23719395	.	-	0	Parent=Os08t0480100-02
Chr08	irgsp1_rep	CDS	23718835	23718954	.	-	0	Parent=Os08t0480100-02
Chr08	irgsp1_rep	CDS	23718609	23718734	.	-	0	Parent=Os08t0480100-02
Chr08	irgsp1_rep	CDS	23718279	23718362	.	-	0	Parent=Os08t0480100-02
Chr08	irgsp1_rep	CDS	23718067	23718192	.	-	0	Parent=Os08t0480100-02
Chr08	irgsp1_rep	three_prime_UTR	23717855	23718066	.	-	.	Parent=Os08t0480100-02
Chr08	irgsp1_rep	mRNA	23723615	23727247	.	-	.	ID=Os08t0480200-01;Name=Os08t0480200-01;Locus_id=Os08g0480200;CGSNL Gene Symbol=2ODD19;CGSNL Gene Name=2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 19;Oryzabase Gene Symbol Synonym(s)=OsODD19%2C ODD19%2C 2-ODD19%2C Os2-ODD19%2C Os2ODD19;Oryzabase Gene Name Synonym(s)=2-oxoglutarate-dependent dioxygenase 19;Note=2OG-Fe(II) oxygenase domain containing protein.;Transcript_evidence=AK065790 (DDBJ%2C Best hit);ORF_evidence=A2YWB1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=J013039B08;Oryzabase=22543;Expression=AK065790;TENOR=Os08t0480200-01;KEGG=Os08t0480200-01
Chr08	irgsp1_rep	five_prime_UTR	23727111	23727247	.	-	.	Parent=Os08t0480200-01
Chr08	irgsp1_rep	five_prime_UTR	23725757	23725765	.	-	.	Parent=Os08t0480200-01
Chr08	irgsp1_rep	CDS	23725568	23725756	.	-	0	Parent=Os08t0480200-01
Chr08	irgsp1_rep	CDS	23725069	23725304	.	-	0	Parent=Os08t0480200-01
Chr08	irgsp1_rep	CDS	23724608	23724938	.	-	1	Parent=Os08t0480200-01
Chr08	irgsp1_rep	CDS	23723885	23724142	.	-	0	Parent=Os08t0480200-01
Chr08	irgsp1_rep	three_prime_UTR	23723615	23723884	.	-	.	Parent=Os08t0480200-01
Chr08	irgsp1_rep	mRNA	23730714	23732293	.	-	.	ID=Os08t0480400-01;Name=Os08t0480400-01;Locus_id=Os08g0480400;Note=Similar to cupin%2C RmlC-type.;Transcript_evidence=AK241844 (DDBJ%2C Best hit);ORF_evidence=NP_001147194.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: cysteamine dioxygenase activity (GO:0047800);InterPro=Cupin%2C RmlC-type (IPR011051),Cysteamine dioxygenase (IPR012864),RmlC-like jelly roll fold (IPR014710);NIAS_FLcDNA=J065214F15;TENOR=Os08t0480400-01;KEGG=Os08t0480400-01 (EC:1.13.11.19)
Chr08	irgsp1_rep	five_prime_UTR	23732094	23732293	.	-	.	Parent=Os08t0480400-01
Chr08	irgsp1_rep	CDS	23731955	23732093	.	-	0	Parent=Os08t0480400-01
Chr08	irgsp1_rep	CDS	23731682	23731857	.	-	2	Parent=Os08t0480400-01
Chr08	irgsp1_rep	CDS	23731425	23731569	.	-	0	Parent=Os08t0480400-01
Chr08	irgsp1_rep	CDS	23731077	23731283	.	-	2	Parent=Os08t0480400-01
Chr08	irgsp1_rep	CDS	23730802	23730935	.	-	2	Parent=Os08t0480400-01
Chr08	irgsp1_rep	three_prime_UTR	23730714	23730801	.	-	.	Parent=Os08t0480400-01
Chr08	irgsp1_rep	mRNA	23741487	23746977	.	-	.	ID=Os08t0480500-01;Name=Os08t0480500-01;Locus_id=Os08g0480500;Oryzabase Gene Symbol Synonym(s)=OsMed22_2%2C Med22_2;Oryzabase Gene Name Synonym(s)=Mediator 22_2;Note=Similar to surfeit locus protein 5.;Transcript_evidence=AK120540 (DDBJ%2C Best hit);ORF_evidence=NP_001150903.1 (RefSeq);GO=Biological Process: regulation of transcription from RNA polymerase II promoter (GO:0006357),Cellular Component: mediator complex (GO:0016592),Molecular Function: RNA polymerase II transcription cofactor activity (GO:0001104);InterPro=Mediator complex%2C subunit Med22 (IPR009332);NIAS_FLcDNA=J013129G19;Oryzabase=20980;TENOR=Os08t0480500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	23746573	23746977	.	-	.	Parent=Os08t0480500-01
Chr08	irgsp1_rep	CDS	23746426	23746572	.	-	0	Parent=Os08t0480500-01
Chr08	irgsp1_rep	CDS	23746269	23746334	.	-	0	Parent=Os08t0480500-01
Chr08	irgsp1_rep	CDS	23744581	23744814	.	-	0	Parent=Os08t0480500-01
Chr08	irgsp1_rep	three_prime_UTR	23744580	23744580	.	-	.	Parent=Os08t0480500-01
Chr08	irgsp1_rep	three_prime_UTR	23741487	23741836	.	-	.	Parent=Os08t0480500-01
Chr08	irgsp1_rep	mRNA	23750337	23752508	.	+	.	ID=Os08t0480800-01;Name=Os08t0480800-01;Locus_id=Os08g0480800;CGSNL Gene Symbol=GF14A;CGSNL Gene Name=G-BOX FACTOR 14-3-3A PROTEIN;Oryzabase Gene Symbol Synonym(s)=GF14a%2C OsGF14a%2C WIN2%2C 14-3-3a;Oryzabase Gene Name Synonym(s)=G-box factor 14-3-3a protein%2C wound-inducible WIN2;Note=Similar to TaWIN2.;Transcript_evidence=AK101599 (DDBJ%2C Best hit);ORF_evidence=Q84J55 (UniProt);GO=Molecular Function: protein domain specific binding (GO:0019904);InterPro=14-3-3 protein (IPR000308),14-3-3 protein%2C conserved site (IPR023409),14-3-3 domain (IPR023410);NIAS_FLcDNA=J033051I09;Oryzabase=11410;Expression=AK101599;TENOR=Os08t0480800-01;KEGG=Os08t0480800-01
Chr08	irgsp1_rep	five_prime_UTR	23750337	23750427	.	+	.	Parent=Os08t0480800-01
Chr08	irgsp1_rep	CDS	23750428	23750928	.	+	0	Parent=Os08t0480800-01
Chr08	irgsp1_rep	CDS	23751035	23751157	.	+	0	Parent=Os08t0480800-01
Chr08	irgsp1_rep	CDS	23751976	23752092	.	+	0	Parent=Os08t0480800-01
Chr08	irgsp1_rep	CDS	23752190	23752243	.	+	0	Parent=Os08t0480800-01
Chr08	irgsp1_rep	three_prime_UTR	23752244	23752508	.	+	.	Parent=Os08t0480800-01
Chr08	irgsp1_rep	mRNA	23750458	23752088	.	-	.	ID=Os08t0480901-00;Name=Os08t0480901-00;Locus_id=Os08g0480901;Note=Non-protein coding transcript.;Transcript_evidence=BT017754 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0480901-00
Chr08	irgsp1_rep	exon	23751960	23752088	.	-	.	Parent=Os08t0480901-00
Chr08	irgsp1_rep	exon	23751038	23751145	.	-	.	Parent=Os08t0480901-00
Chr08	irgsp1_rep	exon	23750458	23750934	.	-	.	Parent=Os08t0480901-00
Chr08	irgsp1_rep	mRNA	23761213	23763746	.	-	.	ID=Os08t0481000-01;Name=Os08t0481000-01;Locus_id=Os08g0481000;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK101503 (DDBJ%2C Best hit);ORF_evidence=XP_002445986.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033044E03;Expression=AK101503;TENOR=Os08t0481000-01;KEGG=Os08t0481000-01
Chr08	irgsp1_rep	five_prime_UTR	23763739	23763746	.	-	.	Parent=Os08t0481000-01
Chr08	irgsp1_rep	CDS	23763012	23763738	.	-	0	Parent=Os08t0481000-01
Chr08	irgsp1_rep	CDS	23761473	23762437	.	-	2	Parent=Os08t0481000-01
Chr08	irgsp1_rep	three_prime_UTR	23761213	23761472	.	-	.	Parent=Os08t0481000-01
Chr08	irgsp1_rep	mRNA	23755951	23763739	.	-	.	ID=Os08t0481000-02;Name=Os08t0481000-02;Locus_id=Os08g0481000;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK119458 (DDBJ%2C Best hit);ORF_evidence=XP_002445986.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-133-E06;Expression=AK119458;TENOR=Os08t0481000-02;KEGG=Os08t0481000-02
Chr08	irgsp1_rep	five_prime_UTR	23763739	23763739	.	-	.	Parent=Os08t0481000-02
Chr08	irgsp1_rep	CDS	23763012	23763738	.	-	0	Parent=Os08t0481000-02
Chr08	irgsp1_rep	CDS	23761473	23762437	.	-	2	Parent=Os08t0481000-02
Chr08	irgsp1_rep	three_prime_UTR	23761237	23761472	.	-	.	Parent=Os08t0481000-02
Chr08	irgsp1_rep	three_prime_UTR	23757655	23757865	.	-	.	Parent=Os08t0481000-02
Chr08	irgsp1_rep	three_prime_UTR	23756173	23756743	.	-	.	Parent=Os08t0481000-02
Chr08	irgsp1_rep	three_prime_UTR	23755951	23756075	.	-	.	Parent=Os08t0481000-02
Chr08	irgsp1_rep	mRNA	23762888	23763739	.	-	.	ID=Os08t0481000-03;Name=Os08t0481000-03;Locus_id=Os08g0481000;Note=Hypothetical conserved gene.;Transcript_evidence=AK111069 (DDBJ%2C Best hit);ORF_evidence=Q6Z235 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-175-E04;Expression=AK111069;TENOR=Os08t0481000-03;KEGG=Os08t0481000-03
Chr08	irgsp1_rep	five_prime_UTR	23763739	23763739	.	-	.	Parent=Os08t0481000-03
Chr08	irgsp1_rep	CDS	23762938	23763738	.	-	0	Parent=Os08t0481000-03
Chr08	irgsp1_rep	three_prime_UTR	23762888	23762937	.	-	.	Parent=Os08t0481000-03
Chr08	irgsp1_rep	mRNA	23756316	23758265	.	+	.	ID=Os08t0481100-01;Name=Os08t0481100-01;Locus_id=Os08g0481100;Oryzabase Gene Symbol Synonym(s)=SIP3;Oryzabase Gene Name Synonym(s)=SKIP interacting protein 3%2C SKIPa-interacting protein 3%2C SKIPa-interacting protein 3;Note=Similar to SKIP interacting protein 3 (Fragment).;Transcript_evidence=AK240733 (DDBJ%2C Best hit);ORF_evidence=B8Q889 (UniProt);NIAS_FLcDNA=J043031N12;Oryzabase=9935;TENOR=Os08t0481100-01;KEGG=Os08t0481100-01
Chr08	irgsp1_rep	five_prime_UTR	23756316	23756458	.	+	.	Parent=Os08t0481100-01
Chr08	irgsp1_rep	CDS	23756459	23756487	.	+	0	Parent=Os08t0481100-01
Chr08	irgsp1_rep	CDS	23756665	23757940	.	+	1	Parent=Os08t0481100-01
Chr08	irgsp1_rep	three_prime_UTR	23757941	23758265	.	+	.	Parent=Os08t0481100-01
Chr08	irgsp1_rep	mRNA	23793741	23796449	.	-	.	ID=Os08t0481200-01;Name=Os08t0481200-01;Locus_id=Os08g0481200;Oryzabase Gene Symbol Synonym(s)=OsPUB14;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 14%2C U-box protein 14;Note=Similar to Arm repeat containing protein.;Transcript_evidence=AK072890 (DDBJ%2C Best hit);ORF_evidence=XP_002863798.1 (RefSeq);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),U box domain (IPR003613),Armadillo-like helical (IPR011989),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023150E23;Oryzabase=17806;Expression=AK072890;TENOR=Os08t0481200-01;KEGG=Os08t0481200-01
Chr08	irgsp1_rep	five_prime_UTR	23796392	23796449	.	-	.	Parent=Os08t0481200-01
Chr08	irgsp1_rep	CDS	23796062	23796391	.	-	0	Parent=Os08t0481200-01
Chr08	irgsp1_rep	CDS	23795652	23795768	.	-	0	Parent=Os08t0481200-01
Chr08	irgsp1_rep	CDS	23795133	23795561	.	-	0	Parent=Os08t0481200-01
Chr08	irgsp1_rep	CDS	23794002	23795054	.	-	0	Parent=Os08t0481200-01
Chr08	irgsp1_rep	three_prime_UTR	23793741	23794001	.	-	.	Parent=Os08t0481200-01
Chr08	irgsp1_rep	mRNA	23793977	23796367	.	+	.	ID=Os08t0481300-00;Name=Os08t0481300-00;Locus_id=Os08g0481300;Note=Hypothetical protein.;Transcript_evidence=tplb0024f08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0481300-00
Chr08	irgsp1_rep	five_prime_UTR	23793977	23794091	.	+	.	Parent=Os08t0481300-00
Chr08	irgsp1_rep	CDS	23794092	23795048	.	+	0	Parent=Os08t0481300-00
Chr08	irgsp1_rep	CDS	23795120	23795152	.	+	0	Parent=Os08t0481300-00
Chr08	irgsp1_rep	three_prime_UTR	23795153	23795546	.	+	.	Parent=Os08t0481300-00
Chr08	irgsp1_rep	three_prime_UTR	23795642	23795767	.	+	.	Parent=Os08t0481300-00
Chr08	irgsp1_rep	three_prime_UTR	23796061	23796367	.	+	.	Parent=Os08t0481300-00
Chr08	irgsp1_rep	mRNA	23803892	23805451	.	-	.	ID=Os08t0481400-01;Name=Os08t0481400-01;Locus_id=Os08g0481400;CGSNL Gene Symbol=HOX20;CGSNL Gene Name=HOMEOBOX GENE 20;Oryzabase Gene Symbol Synonym(s)=Oshox20%2C OsHox20;Oryzabase Gene Name Synonym(s)=rice homeobox gene 20%2C Homeobox-leucine zipper protein HOX20%2C Homeodomain transcription factor HOX20%2C HD-ZIP protein HOX20;Note=Similar to HAHB-7 (Fragment).;Transcript_evidence=AK068244 (DDBJ%2C Best hit),AK106818 (DDBJ%2C Best hit);ORF_evidence=Q6Z248 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: transcription regulatory region sequence-specific DNA binding (GO:0000976),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Helix-turn-helix motif%2C lambda-like repressor (IPR000047),Homeobox (IPR001356),Leucine zipper%2C homeobox-associated (IPR003106),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Homeobox%2C conserved site (IPR017970);NIAS_FLcDNA=J013140I04,002-116-D05;Oryzabase=8457;Expression=AK068244;TENOR=Os08t0481400-01;KEGG=Os08t0481400-01
Chr08	irgsp1_rep	five_prime_UTR	23804958	23805451	.	-	.	Parent=Os08t0481400-01
Chr08	irgsp1_rep	CDS	23804918	23804957	.	-	0	Parent=Os08t0481400-01
Chr08	irgsp1_rep	CDS	23804485	23804837	.	-	2	Parent=Os08t0481400-01
Chr08	irgsp1_rep	CDS	23803997	23804413	.	-	0	Parent=Os08t0481400-01
Chr08	irgsp1_rep	three_prime_UTR	23803892	23803996	.	-	.	Parent=Os08t0481400-01
Chr08	irgsp1_rep	mRNA	23807900	23810909	.	+	.	ID=Os08t0481500-01;Name=Os08t0481500-01;Locus_id=Os08g0481500;Note=Conserved hypothetical protein.;Transcript_evidence=AK241875 (DDBJ%2C Best hit);ORF_evidence=NP_001062065.2 (RefSeq);NIAS_FLcDNA=J065218E06;TENOR=Os08t0481500-01;KEGG=Os08t0481500-01
Chr08	irgsp1_rep	five_prime_UTR	23807900	23808079	.	+	.	Parent=Os08t0481500-01
Chr08	irgsp1_rep	CDS	23808080	23808094	.	+	0	Parent=Os08t0481500-01
Chr08	irgsp1_rep	CDS	23808212	23808430	.	+	0	Parent=Os08t0481500-01
Chr08	irgsp1_rep	three_prime_UTR	23808431	23808431	.	+	.	Parent=Os08t0481500-01
Chr08	irgsp1_rep	three_prime_UTR	23808529	23808795	.	+	.	Parent=Os08t0481500-01
Chr08	irgsp1_rep	three_prime_UTR	23809476	23809598	.	+	.	Parent=Os08t0481500-01
Chr08	irgsp1_rep	three_prime_UTR	23810650	23810909	.	+	.	Parent=Os08t0481500-01
Chr08	irgsp1_rep	mRNA	23818978	23819969	.	+	.	ID=Os08t0481700-00;Name=Os08t0481700-00;Locus_id=Os08g0481700;Note=Hypothetical conserved gene.;Transcript_evidence=CT835933 (DDBJ%2C Best hit);ORF_evidence=Q6Z230 (UniProt);TENOR=Os08t0481700-00;KEGG=Os08t0481700-00
Chr08	irgsp1_rep	five_prime_UTR	23818978	23819043	.	+	.	Parent=Os08t0481700-00
Chr08	irgsp1_rep	CDS	23819044	23819367	.	+	0	Parent=Os08t0481700-00
Chr08	irgsp1_rep	three_prime_UTR	23819368	23819969	.	+	.	Parent=Os08t0481700-00
Chr08	irgsp1_rep	mRNA	23820396	23823075	.	-	.	ID=Os08t0481800-01;Name=Os08t0481800-01;Locus_id=Os08g0481800;Note=Similar to Plastidic general dicarboxylate transporter.;Transcript_evidence=AK060342 (DDBJ%2C Best hit);ORF_evidence=NP_001104869.1 (RefSeq);GO=Biological Process: sodium ion transport (GO:0006814),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Sodium/sulphate symporter (IPR001898);NIAS_FLcDNA=001-008-D06;Expression=AK060342;TENOR=Os08t0481800-01;KEGG=Os08t0481800-01
Chr08	irgsp1_rep	five_prime_UTR	23823074	23823075	.	-	.	Parent=Os08t0481800-01
Chr08	irgsp1_rep	CDS	23822919	23823073	.	-	0	Parent=Os08t0481800-01
Chr08	irgsp1_rep	CDS	23821137	23821585	.	-	1	Parent=Os08t0481800-01
Chr08	irgsp1_rep	CDS	23820652	23820767	.	-	2	Parent=Os08t0481800-01
Chr08	irgsp1_rep	three_prime_UTR	23820396	23820651	.	-	.	Parent=Os08t0481800-01
Chr08	irgsp1_rep	mRNA	23829382	23833274	.	+	.	ID=Os08t0481950-01;Name=Os08t0481950-01;Locus_id=Os08g0481950;Note=Similar to predicted protein.;Transcript_evidence=AK241452 (DDBJ%2C Best hit);ORF_evidence=Q6A4W9 (UniProt);GO=Biological Process: riboflavin biosynthetic process (GO:0009231),Molecular Function: GTP cyclohydrolase II activity (GO:0003935),Molecular Function: 3%2C4-dihydroxy-2-butanone-4-phosphate synthase activity (GO:0008686);InterPro=3%2C4-dihydroxy-2-butanone 4-phosphate synthase%2C RibB (IPR000422),GTP cyclohydrolase II%2C RibA (IPR000926),Riboflavin biosynthesis protein RibBA (IPR016299),DHBP synthase RibB-like alpha/beta domain (IPR017945);NIAS_FLcDNA=J065163N15;TENOR=Os08t0481950-01;KEGG=Os08t0481950-01 (EC:3.5.4.25%2C EC:4.1.99.12)
Chr08	irgsp1_rep	five_prime_UTR	23829382	23829593	.	+	.	Parent=Os08t0481950-01
Chr08	irgsp1_rep	CDS	23830154	23830549	.	+	0	Parent=Os08t0481950-01
Chr08	irgsp1_rep	CDS	23830641	23830862	.	+	0	Parent=Os08t0481950-01
Chr08	irgsp1_rep	CDS	23831226	23831551	.	+	0	Parent=Os08t0481950-01
Chr08	irgsp1_rep	CDS	23831890	23832019	.	+	1	Parent=Os08t0481950-01
Chr08	irgsp1_rep	CDS	23832387	23832683	.	+	0	Parent=Os08t0481950-01
Chr08	irgsp1_rep	CDS	23832792	23833061	.	+	0	Parent=Os08t0481950-01
Chr08	irgsp1_rep	three_prime_UTR	23833062	23833274	.	+	.	Parent=Os08t0481950-01
Chr08	irgsp1_rep	mRNA	23831880	23832980	.	-	.	ID=Os08t0482025-00;Name=Os08t0482025-00;Locus_id=Os08g0482025;Note=Hypothetical protein.;Transcript_evidence=BT009228 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0482025-00
Chr08	irgsp1_rep	five_prime_UTR	23832818	23832980	.	-	.	Parent=Os08t0482025-00
Chr08	irgsp1_rep	five_prime_UTR	23832592	23832706	.	-	.	Parent=Os08t0482025-00
Chr08	irgsp1_rep	CDS	23832385	23832591	.	-	0	Parent=Os08t0482025-00
Chr08	irgsp1_rep	CDS	23831974	23832018	.	-	0	Parent=Os08t0482025-00
Chr08	irgsp1_rep	three_prime_UTR	23831880	23831973	.	-	.	Parent=Os08t0482025-00
Chr08	irgsp1_rep	mRNA	23834299	23843473	.	+	.	ID=Os08t0482100-01;Name=Os08t0482100-01;Locus_id=Os08g0482100;Note=LETM1-like domain containing protein.;Transcript_evidence=AK065903 (DDBJ%2C Best hit);ORF_evidence=Q6Z233 (UniProt);InterPro=LETM1-like (IPR011685);NIAS_FLcDNA=J013049J03;Expression=AK065903;TENOR=Os08t0482100-01;KEGG=Os08t0482100-01
Chr08	irgsp1_rep	five_prime_UTR	23834299	23834437	.	+	.	Parent=Os08t0482100-01
Chr08	irgsp1_rep	CDS	23834438	23834487	.	+	0	Parent=Os08t0482100-01
Chr08	irgsp1_rep	CDS	23835077	23835575	.	+	1	Parent=Os08t0482100-01
Chr08	irgsp1_rep	CDS	23836144	23836235	.	+	0	Parent=Os08t0482100-01
Chr08	irgsp1_rep	CDS	23836813	23836977	.	+	1	Parent=Os08t0482100-01
Chr08	irgsp1_rep	CDS	23837059	23837446	.	+	1	Parent=Os08t0482100-01
Chr08	irgsp1_rep	CDS	23837517	23837635	.	+	0	Parent=Os08t0482100-01
Chr08	irgsp1_rep	CDS	23837767	23837839	.	+	1	Parent=Os08t0482100-01
Chr08	irgsp1_rep	CDS	23837917	23838122	.	+	0	Parent=Os08t0482100-01
Chr08	irgsp1_rep	CDS	23838212	23838256	.	+	1	Parent=Os08t0482100-01
Chr08	irgsp1_rep	CDS	23838362	23838443	.	+	1	Parent=Os08t0482100-01
Chr08	irgsp1_rep	CDS	23839452	23839640	.	+	0	Parent=Os08t0482100-01
Chr08	irgsp1_rep	CDS	23841741	23841844	.	+	0	Parent=Os08t0482100-01
Chr08	irgsp1_rep	CDS	23841911	23842001	.	+	1	Parent=Os08t0482100-01
Chr08	irgsp1_rep	CDS	23842339	23842467	.	+	0	Parent=Os08t0482100-01
Chr08	irgsp1_rep	CDS	23842667	23842798	.	+	0	Parent=Os08t0482100-01
Chr08	irgsp1_rep	CDS	23843021	23843191	.	+	0	Parent=Os08t0482100-01
Chr08	irgsp1_rep	CDS	23843414	23843473	.	+	0	Parent=Os08t0482100-01
Chr08	irgsp1_rep	mRNA	23837273	23844486	.	+	.	ID=Os08t0482100-02;Name=Os08t0482100-02;Locus_id=Os08g0482100;Note=Similar to predicted protein.;Transcript_evidence=AK066429 (DDBJ%2C Best hit);ORF_evidence=Q6Z233 (UniProt);InterPro=LETM1-like (IPR011685);NIAS_FLcDNA=J013062F22;Expression=AK066429;TENOR=Os08t0482100-02;KEGG=Os08t0482100-02
Chr08	irgsp1_rep	CDS	23837273	23837446	.	+	0	Parent=Os08t0482100-02
Chr08	irgsp1_rep	CDS	23837517	23837635	.	+	0	Parent=Os08t0482100-02
Chr08	irgsp1_rep	CDS	23837767	23837839	.	+	1	Parent=Os08t0482100-02
Chr08	irgsp1_rep	CDS	23837917	23838122	.	+	0	Parent=Os08t0482100-02
Chr08	irgsp1_rep	CDS	23838212	23838256	.	+	1	Parent=Os08t0482100-02
Chr08	irgsp1_rep	CDS	23838362	23838443	.	+	1	Parent=Os08t0482100-02
Chr08	irgsp1_rep	CDS	23839452	23839640	.	+	0	Parent=Os08t0482100-02
Chr08	irgsp1_rep	CDS	23841741	23841844	.	+	0	Parent=Os08t0482100-02
Chr08	irgsp1_rep	CDS	23841911	23842001	.	+	1	Parent=Os08t0482100-02
Chr08	irgsp1_rep	CDS	23842339	23842467	.	+	0	Parent=Os08t0482100-02
Chr08	irgsp1_rep	CDS	23842667	23842798	.	+	0	Parent=Os08t0482100-02
Chr08	irgsp1_rep	CDS	23843021	23843191	.	+	0	Parent=Os08t0482100-02
Chr08	irgsp1_rep	CDS	23843414	23843473	.	+	0	Parent=Os08t0482100-02
Chr08	irgsp1_rep	CDS	23843555	23843689	.	+	0	Parent=Os08t0482100-02
Chr08	irgsp1_rep	three_prime_UTR	23843690	23843724	.	+	.	Parent=Os08t0482100-02
Chr08	irgsp1_rep	three_prime_UTR	23843908	23844486	.	+	.	Parent=Os08t0482100-02
Chr08	irgsp1_rep	mRNA	23847854	23848622	.	+	.	ID=Os08t0482300-01;Name=Os08t0482300-01;Locus_id=Os08g0482300;CGSNL Gene Symbol=AGP1;CGSNL Gene Name=ARABINOGALACTAN PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsAGP1;Oryzabase Gene Name Synonym(s)=Arabinogalactan protein 1;Note=Pistil-specific extensin-like protein domain containing protein.;Transcript_evidence=AK107940 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-135-A12;Oryzabase=11294;Expression=AK107940;TENOR=Os08t0482300-01;KEGG=Os08t0482300-01
Chr08	irgsp1_rep	five_prime_UTR	23847854	23847947	.	+	.	Parent=Os08t0482300-01
Chr08	irgsp1_rep	CDS	23847948	23848388	.	+	0	Parent=Os08t0482300-01
Chr08	irgsp1_rep	three_prime_UTR	23848389	23848622	.	+	.	Parent=Os08t0482300-01
Chr08	irgsp1_rep	mRNA	23850439	23852920	.	-	.	ID=Os08t0482500-01;Name=Os08t0482500-01;Locus_id=Os08g0482500;Note=Hypothetical protein.;Transcript_evidence=AK064400 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-108-H01;Expression=AK064400;TENOR=Os08t0482500-01;KEGG=Os08t0482500-01
Chr08	irgsp1_rep	five_prime_UTR	23852689	23852920	.	-	.	Parent=Os08t0482500-01
Chr08	irgsp1_rep	five_prime_UTR	23851484	23851588	.	-	.	Parent=Os08t0482500-01
Chr08	irgsp1_rep	five_prime_UTR	23851028	23851401	.	-	.	Parent=Os08t0482500-01
Chr08	irgsp1_rep	CDS	23850722	23851027	.	-	0	Parent=Os08t0482500-01
Chr08	irgsp1_rep	three_prime_UTR	23850439	23850721	.	-	.	Parent=Os08t0482500-01
Chr08	irgsp1_rep	mRNA	23850361	23852872	.	-	.	ID=Os08t0482500-02;Name=Os08t0482500-02;Locus_id=Os08g0482500;Note=Hypothetical protein.;Transcript_evidence=AK121571 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033035K07;Expression=AK121571;TENOR=Os08t0482500-02;KEGG=Os08t0482500-02
Chr08	irgsp1_rep	five_prime_UTR	23852689	23852872	.	-	.	Parent=Os08t0482500-02
Chr08	irgsp1_rep	five_prime_UTR	23851484	23851588	.	-	.	Parent=Os08t0482500-02
Chr08	irgsp1_rep	five_prime_UTR	23851028	23851401	.	-	.	Parent=Os08t0482500-02
Chr08	irgsp1_rep	CDS	23850722	23851027	.	-	0	Parent=Os08t0482500-02
Chr08	irgsp1_rep	three_prime_UTR	23850361	23850721	.	-	.	Parent=Os08t0482500-02
Chr08	irgsp1_rep	mRNA	23853339	23854314	.	-	.	ID=Os08t0482600-01;Name=Os08t0482600-01;Locus_id=Os08g0482600;CGSNL Gene Symbol=UCL29;CGSNL Gene Name=UCLACYANIN-LIKE PROTEIN 29;Oryzabase Gene Symbol Synonym(s)=OsUCL29;Oryzabase Gene Name Synonym(s)=uclacyanin-like protein 29;Note=Cupredoxin domain containing protein.;Transcript_evidence=AK063639 (DDBJ%2C Best hit);ORF_evidence=A2YWC7 (UniProt);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Blue (type 1) copper domain (IPR000923),Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);NIAS_FLcDNA=001-118-G07;Oryzabase=9778;Expression=AK063639;TENOR=Os08t0482600-01;KEGG=Os08t0482600-01
Chr08	irgsp1_rep	five_prime_UTR	23854186	23854314	.	-	.	Parent=Os08t0482600-01
Chr08	irgsp1_rep	CDS	23854011	23854185	.	-	0	Parent=Os08t0482600-01
Chr08	irgsp1_rep	CDS	23853523	23853866	.	-	2	Parent=Os08t0482600-01
Chr08	irgsp1_rep	three_prime_UTR	23853339	23853522	.	-	.	Parent=Os08t0482600-01
Chr08	irgsp1_rep	mRNA	23858723	23860121	.	-	.	ID=Os08t0482700-01;Name=Os08t0482700-01;Locus_id=Os08g0482700;CGSNL Gene Symbol=UCL30;CGSNL Gene Name=UCLACYANIN-LIKE PROTEIN 30;Oryzabase Gene Symbol Synonym(s)=OsUCL30;Oryzabase Gene Name Synonym(s)=uclacyanin-like protein 30;Note=Cupredoxin domain containing protein.;Transcript_evidence=AK060044 (DDBJ%2C Best hit);ORF_evidence=A2YWC8 (UniProt);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);NIAS_FLcDNA=006-304-F05;Oryzabase=9779;Expression=AK060044;TENOR=Os08t0482700-01;KEGG=Os08t0482700-01
Chr08	irgsp1_rep	five_prime_UTR	23860027	23860121	.	-	.	Parent=Os08t0482700-01
Chr08	irgsp1_rep	CDS	23859864	23860026	.	-	0	Parent=Os08t0482700-01
Chr08	irgsp1_rep	CDS	23858992	23859374	.	-	2	Parent=Os08t0482700-01
Chr08	irgsp1_rep	three_prime_UTR	23858723	23858991	.	-	.	Parent=Os08t0482700-01
Chr08	irgsp1_rep	mRNA	23858730	23860121	.	-	.	ID=Os08t0482700-02;Name=Os08t0482700-02;Locus_id=Os08g0482700;CGSNL Gene Symbol=UCL30;CGSNL Gene Name=UCLACYANIN-LIKE PROTEIN 30;Oryzabase Gene Symbol Synonym(s)=OsUCL30;Oryzabase Gene Name Synonym(s)=uclacyanin-like protein 30;Note=Conserved hypothetical protein.;Transcript_evidence=AK066830 (DDBJ%2C Best hit);ORF_evidence=Q6ZFF0 (UniProt);NIAS_FLcDNA=J013075I22;Oryzabase=9779;TENOR=Os08t0482700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	23859646	23860121	.	-	.	Parent=Os08t0482700-02
Chr08	irgsp1_rep	CDS	23859418	23859645	.	-	0	Parent=Os08t0482700-02
Chr08	irgsp1_rep	three_prime_UTR	23858730	23859417	.	-	.	Parent=Os08t0482700-02
Chr08	irgsp1_rep	mRNA	23869863	23871110	.	-	.	ID=Os08t0483100-01;Name=Os08t0483100-01;Locus_id=Os08g0483100;Note=Conserved hypothetical protein.;Transcript_evidence=AK099821 (DDBJ%2C Best hit);ORF_evidence=A3BU75 (UniProt);NIAS_FLcDNA=J013101A13;Expression=AK099821;TENOR=Os08t0483100-01;KEGG=Os08t0483100-01
Chr08	irgsp1_rep	five_prime_UTR	23870955	23871110	.	-	.	Parent=Os08t0483100-01
Chr08	irgsp1_rep	CDS	23870731	23870954	.	-	0	Parent=Os08t0483100-01
Chr08	irgsp1_rep	CDS	23870178	23870601	.	-	1	Parent=Os08t0483100-01
Chr08	irgsp1_rep	three_prime_UTR	23869863	23870177	.	-	.	Parent=Os08t0483100-01
Chr08	irgsp1_rep	mRNA	23871195	23876192	.	-	.	ID=Os08t0483200-01;Name=Os08t0483200-01;Locus_id=Os08g0483200;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK072137 (DDBJ%2C Best hit),AK068161 (DDBJ%2C Best hit);ORF_evidence=NP_001150253.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013128O11,J013134M04;Expression=AK072137;TENOR=Os08t0483200-01;KEGG=Os08t0483200-01
Chr08	irgsp1_rep	five_prime_UTR	23876146	23876192	.	-	.	Parent=Os08t0483200-01
Chr08	irgsp1_rep	CDS	23875837	23876145	.	-	0	Parent=Os08t0483200-01
Chr08	irgsp1_rep	CDS	23875110	23875208	.	-	0	Parent=Os08t0483200-01
Chr08	irgsp1_rep	CDS	23874227	23874508	.	-	0	Parent=Os08t0483200-01
Chr08	irgsp1_rep	CDS	23873985	23874104	.	-	0	Parent=Os08t0483200-01
Chr08	irgsp1_rep	three_prime_UTR	23873917	23873984	.	-	.	Parent=Os08t0483200-01
Chr08	irgsp1_rep	three_prime_UTR	23871195	23873435	.	-	.	Parent=Os08t0483200-01
Chr08	irgsp1_rep	mRNA	23883849	23886487	.	-	.	ID=Os08t0483600-01;Name=Os08t0483600-01;Locus_id=Os08g0483600;Note=Conserved hypothetical protein.;Transcript_evidence=AK099543 (DDBJ%2C Best hit);ORF_evidence=B9G1G7 (UniProt);NIAS_FLcDNA=J013032L02;Expression=AK099543;TENOR=Os08t0483600-01;KEGG=Os08t0483600-01
Chr08	irgsp1_rep	five_prime_UTR	23886430	23886487	.	-	.	Parent=Os08t0483600-01
Chr08	irgsp1_rep	CDS	23886367	23886429	.	-	0	Parent=Os08t0483600-01
Chr08	irgsp1_rep	CDS	23886198	23886247	.	-	0	Parent=Os08t0483600-01
Chr08	irgsp1_rep	CDS	23886016	23886102	.	-	1	Parent=Os08t0483600-01
Chr08	irgsp1_rep	CDS	23885863	23885933	.	-	1	Parent=Os08t0483600-01
Chr08	irgsp1_rep	CDS	23885095	23885288	.	-	2	Parent=Os08t0483600-01
Chr08	irgsp1_rep	CDS	23884091	23884201	.	-	0	Parent=Os08t0483600-01
Chr08	irgsp1_rep	three_prime_UTR	23883849	23884090	.	-	.	Parent=Os08t0483600-01
Chr08	irgsp1_rep	mRNA	23883834	23886482	.	-	.	ID=Os08t0483600-02;Name=Os08t0483600-02;Locus_id=Os08g0483600;Note=Hypothetical conserved gene.;Transcript_evidence=AK100721 (DDBJ%2C Best hit);ORF_evidence=B9G1G7 (UniProt);NIAS_FLcDNA=J023116H09;Expression=AK100721;TENOR=Os08t0483600-02;KEGG=Os08t0483600-02
Chr08	irgsp1_rep	five_prime_UTR	23886364	23886482	.	-	.	Parent=Os08t0483600-02
Chr08	irgsp1_rep	five_prime_UTR	23886144	23886248	.	-	.	Parent=Os08t0483600-02
Chr08	irgsp1_rep	CDS	23886016	23886143	.	-	0	Parent=Os08t0483600-02
Chr08	irgsp1_rep	CDS	23885863	23885933	.	-	1	Parent=Os08t0483600-02
Chr08	irgsp1_rep	CDS	23885002	23885288	.	-	2	Parent=Os08t0483600-02
Chr08	irgsp1_rep	three_prime_UTR	23883834	23885001	.	-	.	Parent=Os08t0483600-02
Chr08	irgsp1_rep	mRNA	23891436	23892349	.	+	.	ID=Os08t0483800-01;Name=Os08t0483800-01;Locus_id=Os08g0483800;Note=Hypothetical gene.;Transcript_evidence=AK100866 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023124C12;TENOR=Os08t0483800-01
Chr08	irgsp1_rep	five_prime_UTR	23891436	23892111	.	+	.	Parent=Os08t0483800-01
Chr08	irgsp1_rep	CDS	23892112	23892349	.	+	0	Parent=Os08t0483800-01
Chr08	irgsp1_rep	mRNA	23894602	23896537	.	-	.	ID=Os08t0483900-01;Name=Os08t0483900-01;Locus_id=Os08g0483900;Oryzabase Gene Symbol Synonym(s)=OsbHLH047%2C bHLH047;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 047;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=AK107626 (DDBJ%2C Best hit);ORF_evidence=NP_001151793.1 (RefSeq);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=002-131-D10;Oryzabase=15338;Expression=AK107626;TENOR=Os08t0483900-01;KEGG=Os08t0483900-01
Chr08	irgsp1_rep	five_prime_UTR	23896423	23896537	.	-	.	Parent=Os08t0483900-01
Chr08	irgsp1_rep	CDS	23895910	23896422	.	-	0	Parent=Os08t0483900-01
Chr08	irgsp1_rep	CDS	23895331	23895795	.	-	0	Parent=Os08t0483900-01
Chr08	irgsp1_rep	CDS	23894808	23894921	.	-	0	Parent=Os08t0483900-01
Chr08	irgsp1_rep	three_prime_UTR	23894602	23894807	.	-	.	Parent=Os08t0483900-01
Chr08	irgsp1_rep	mRNA	23913124	23916954	.	+	.	ID=Os08t0484100-01;Name=Os08t0484100-01;Locus_id=Os08g0484100;Note=Similar to predicted protein.;Transcript_evidence=AK242582 (DDBJ%2C Best hit);ORF_evidence=A3BU81 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J090010J18;TENOR=Os08t0484100-01;KEGG=Os08t0484100-01
Chr08	irgsp1_rep	five_prime_UTR	23913124	23913581	.	+	.	Parent=Os08t0484100-01
Chr08	irgsp1_rep	CDS	23913582	23913654	.	+	0	Parent=Os08t0484100-01
Chr08	irgsp1_rep	CDS	23913767	23913895	.	+	2	Parent=Os08t0484100-01
Chr08	irgsp1_rep	CDS	23913969	23914088	.	+	2	Parent=Os08t0484100-01
Chr08	irgsp1_rep	CDS	23914416	23914438	.	+	2	Parent=Os08t0484100-01
Chr08	irgsp1_rep	three_prime_UTR	23914439	23914595	.	+	.	Parent=Os08t0484100-01
Chr08	irgsp1_rep	three_prime_UTR	23914750	23914908	.	+	.	Parent=Os08t0484100-01
Chr08	irgsp1_rep	three_prime_UTR	23914993	23915166	.	+	.	Parent=Os08t0484100-01
Chr08	irgsp1_rep	three_prime_UTR	23915255	23915407	.	+	.	Parent=Os08t0484100-01
Chr08	irgsp1_rep	three_prime_UTR	23915778	23916130	.	+	.	Parent=Os08t0484100-01
Chr08	irgsp1_rep	three_prime_UTR	23916289	23916465	.	+	.	Parent=Os08t0484100-01
Chr08	irgsp1_rep	three_prime_UTR	23916781	23916954	.	+	.	Parent=Os08t0484100-01
Chr08	irgsp1_rep	mRNA	23921006	23922529	.	+	.	ID=Os08t0484200-01;Name=Os08t0484200-01;Locus_id=Os08g0484200;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK287991 (DDBJ%2C Best hit),AK241976 (DDBJ%2C Best hit);ORF_evidence=NP_001062080.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J075097O13,J075096L14;TENOR=Os08t0484200-01;KEGG=Os08t0484200-01
Chr08	irgsp1_rep	five_prime_UTR	23921006	23921090	.	+	.	Parent=Os08t0484200-01
Chr08	irgsp1_rep	CDS	23921091	23922332	.	+	0	Parent=Os08t0484200-01
Chr08	irgsp1_rep	three_prime_UTR	23922333	23922529	.	+	.	Parent=Os08t0484200-01
Chr08	irgsp1_rep	mRNA	23923820	23924194	.	+	.	ID=Os08t0484300-00;Name=Os08t0484300-00;Locus_id=Os08g0484300;Note=Conserved hypothetical protein.;Transcript_evidence=BT019110 (DDBJ);ORF_evidence=C0P2Z7 (UniProt);TENOR=Os08t0484300-00
Chr08	irgsp1_rep	CDS	23923820	23924080	.	+	0	Parent=Os08t0484300-00
Chr08	irgsp1_rep	three_prime_UTR	23924081	23924194	.	+	.	Parent=Os08t0484300-00
Chr08	irgsp1_rep	mRNA	23926958	23934321	.	-	.	ID=Os08t0484400-01;Name=Os08t0484400-01;Locus_id=Os08g0484400;Note=Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p domain containing protein.;Transcript_evidence=AK065727 (DDBJ%2C Best hit);ORF_evidence=NP_850024.1 (RefSeq);GO=Molecular Function: RNA binding (GO:0003723),Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: tRNA (cytosine-5-)-methyltransferase activity (GO:0016428);InterPro=Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (IPR001678),Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p%2C conserved site (IPR018314),RNA (C5-cytosine) methyltransferase (IPR023267),RNA (C5-cytosine) methyltransferase%2C NCL1 (IPR023270);NIAS_FLcDNA=J013035I17;Expression=AK065727;TENOR=Os08t0484400-01;KEGG=Os08t0484400-01
Chr08	irgsp1_rep	five_prime_UTR	23934304	23934321	.	-	.	Parent=Os08t0484400-01
Chr08	irgsp1_rep	CDS	23934052	23934303	.	-	0	Parent=Os08t0484400-01
Chr08	irgsp1_rep	CDS	23933707	23933795	.	-	0	Parent=Os08t0484400-01
Chr08	irgsp1_rep	CDS	23932997	23933063	.	-	1	Parent=Os08t0484400-01
Chr08	irgsp1_rep	CDS	23932792	23932907	.	-	0	Parent=Os08t0484400-01
Chr08	irgsp1_rep	CDS	23931959	23932025	.	-	1	Parent=Os08t0484400-01
Chr08	irgsp1_rep	CDS	23931700	23931748	.	-	0	Parent=Os08t0484400-01
Chr08	irgsp1_rep	CDS	23931423	23931508	.	-	2	Parent=Os08t0484400-01
Chr08	irgsp1_rep	CDS	23930970	23931223	.	-	0	Parent=Os08t0484400-01
Chr08	irgsp1_rep	CDS	23930829	23930884	.	-	1	Parent=Os08t0484400-01
Chr08	irgsp1_rep	CDS	23930374	23930459	.	-	2	Parent=Os08t0484400-01
Chr08	irgsp1_rep	CDS	23929405	23929497	.	-	0	Parent=Os08t0484400-01
Chr08	irgsp1_rep	CDS	23928443	23928809	.	-	0	Parent=Os08t0484400-01
Chr08	irgsp1_rep	CDS	23927866	23928299	.	-	2	Parent=Os08t0484400-01
Chr08	irgsp1_rep	CDS	23927493	23927721	.	-	0	Parent=Os08t0484400-01
Chr08	irgsp1_rep	CDS	23927232	23927425	.	-	2	Parent=Os08t0484400-01
Chr08	irgsp1_rep	three_prime_UTR	23926958	23927231	.	-	.	Parent=Os08t0484400-01
Chr08	irgsp1_rep	mRNA	23927187	23934306	.	+	.	ID=Os08t0484450-00;Name=Os08t0484450-00;Locus_id=Os08g0484450;Note=Hypothetical protein.;Transcript_evidence=tplb0055k03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0484450-00
Chr08	irgsp1_rep	CDS	23927187	23927408	.	+	0	Parent=Os08t0484450-00
Chr08	irgsp1_rep	three_prime_UTR	23927409	23927414	.	+	.	Parent=Os08t0484450-00
Chr08	irgsp1_rep	three_prime_UTR	23927484	23927712	.	+	.	Parent=Os08t0484450-00
Chr08	irgsp1_rep	three_prime_UTR	23927857	23928271	.	+	.	Parent=Os08t0484450-00
Chr08	irgsp1_rep	three_prime_UTR	23928359	23928805	.	+	.	Parent=Os08t0484450-00
Chr08	irgsp1_rep	three_prime_UTR	23929402	23929497	.	+	.	Parent=Os08t0484450-00
Chr08	irgsp1_rep	three_prime_UTR	23930374	23930447	.	+	.	Parent=Os08t0484450-00
Chr08	irgsp1_rep	three_prime_UTR	23930810	23931542	.	+	.	Parent=Os08t0484450-00
Chr08	irgsp1_rep	three_prime_UTR	23931937	23932025	.	+	.	Parent=Os08t0484450-00
Chr08	irgsp1_rep	three_prime_UTR	23932792	23932966	.	+	.	Parent=Os08t0484450-00
Chr08	irgsp1_rep	three_prime_UTR	23933694	23933788	.	+	.	Parent=Os08t0484450-00
Chr08	irgsp1_rep	three_prime_UTR	23934039	23934306	.	+	.	Parent=Os08t0484450-00
Chr08	irgsp1_rep	mRNA	23934860	23938837	.	-	.	ID=Os08t0484500-01;Name=Os08t0484500-01;Locus_id=Os08g0484500;Note=Similar to Phospho-2-dehydro-3-deoxyheptonate aldolase 1%2C chloroplast precursor (EC 2.5.1.54) (Phospho-2-keto-3-deoxyheptonate aldolase 1) (DAHP synthetase 1) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1).;Transcript_evidence=AK070359 (DDBJ%2C Best hit);ORF_evidence=B6UAK5 (UniProt);GO=Biological Process: aromatic amino acid family biosynthetic process (GO:0009073),Molecular Function: 3-deoxy-7-phosphoheptulonate synthase activity (GO:0003849);InterPro=DAHP synthetase%2C class II (IPR002480);NIAS_FLcDNA=J023054B06;Expression=AK070359;TENOR=Os08t0484500-01;KEGG=Os08t0484500-01 (EC:2.5.1.54)
Chr08	irgsp1_rep	five_prime_UTR	23938815	23938837	.	-	.	Parent=Os08t0484500-01
Chr08	irgsp1_rep	CDS	23938389	23938814	.	-	0	Parent=Os08t0484500-01
Chr08	irgsp1_rep	CDS	23936764	23937041	.	-	0	Parent=Os08t0484500-01
Chr08	irgsp1_rep	CDS	23936361	23936637	.	-	1	Parent=Os08t0484500-01
Chr08	irgsp1_rep	CDS	23935978	23936223	.	-	0	Parent=Os08t0484500-01
Chr08	irgsp1_rep	CDS	23935064	23935354	.	-	0	Parent=Os08t0484500-01
Chr08	irgsp1_rep	three_prime_UTR	23934860	23935063	.	-	.	Parent=Os08t0484500-01
Chr08	irgsp1_rep	mRNA	23934872	23936932	.	-	.	ID=Os08t0484500-02;Name=Os08t0484500-02;Locus_id=Os08g0484500;Note=Similar to Phospho-2-dehydro-3-deoxyheptonate aldolase 2.;Transcript_evidence=AK106196 (DDBJ%2C Best hit);ORF_evidence=B6UAK5 (UniProt);GO=Biological Process: aromatic amino acid family biosynthetic process (GO:0009073),Molecular Function: 3-deoxy-7-phosphoheptulonate synthase activity (GO:0003849);InterPro=DAHP synthetase%2C class II (IPR002480);NIAS_FLcDNA=001-208-E11;Expression=AK106196;TENOR=Os08t0484500-02;KEGG=Os08t0484500-02 (EC:2.5.1.54)
Chr08	irgsp1_rep	five_prime_UTR	23936931	23936932	.	-	.	Parent=Os08t0484500-02
Chr08	irgsp1_rep	CDS	23936764	23936930	.	-	0	Parent=Os08t0484500-02
Chr08	irgsp1_rep	CDS	23936361	23936637	.	-	1	Parent=Os08t0484500-02
Chr08	irgsp1_rep	CDS	23935978	23936223	.	-	0	Parent=Os08t0484500-02
Chr08	irgsp1_rep	CDS	23935064	23935354	.	-	0	Parent=Os08t0484500-02
Chr08	irgsp1_rep	three_prime_UTR	23934872	23935063	.	-	.	Parent=Os08t0484500-02
Chr08	irgsp1_rep	mRNA	23935128	23938812	.	+	.	ID=Os08t0484533-00;Name=Os08t0484533-00;Locus_id=Os08g0484533;Note=Hypothetical protein.;Transcript_evidence=tplb0022g15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0484533-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	23935128	23935357	.	+	.	Parent=Os08t0484533-00
Chr08	irgsp1_rep	five_prime_UTR	23935982	23936205	.	+	.	Parent=Os08t0484533-00
Chr08	irgsp1_rep	five_prime_UTR	23936345	23936633	.	+	.	Parent=Os08t0484533-00
Chr08	irgsp1_rep	five_prime_UTR	23936756	23937038	.	+	.	Parent=Os08t0484533-00
Chr08	irgsp1_rep	five_prime_UTR	23938386	23938392	.	+	.	Parent=Os08t0484533-00
Chr08	irgsp1_rep	CDS	23938393	23938812	.	+	0	Parent=Os08t0484533-00
Chr08	irgsp1_rep	mRNA	23942304	23947375	.	+	.	ID=Os08t0484600-01;Name=Os08t0484600-01;Locus_id=Os08g0484600;RAP-DB Gene Symbol Synonym(s)=OSK4%2C osk4%2C OsATG1c%2C ATG1C%2C SnRK1B%2C snrk1b%2C SnRK1B/OSK24%2C OSK24;RAP-DB Gene Name Synonym(s)=PROTEIN KINASE 4%2C protein kinase 4%2C autophagy 1c%2C AUTOPHAGY ASSOCIATED GENE 1C%2C SnRK1B protein kinase%2C sucrose non-fermenting-1 related protein kinase 1b;CGSNL Gene Symbol=OSK4;CGSNL Gene Name=PROTEIN KINASE 4;Oryzabase Gene Symbol Synonym(s)=osk4%2C OsK4%2C OsATG1c%2C ATG1C%2C SnRK1B%2C snrk1b%2C SnRK1B/OSK24%2C OSK24%2C OsK24%2C OsSNRK1b;Oryzabase Gene Name Synonym(s)=protein kinase 4%2C autophagy 1c%2C AUTOPHAGY ASSOCIATED GENE 1C%2C SnRK1B protein kinase%2C sucrose non-fermenting-1 related protein kinase 1b;Note=Serine/threonine protein kinase%2C Carbohydrate metabolism;Transcript_evidence=D82035 (Genbank),AB101656 (Genbank),AK100591 (Genbank),AK072723 (Genbank);ORF_evidence=Q9ZRJ3 (UniProt),Q852Q1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Kinase-associated KA1 (IPR001772),Serine/threonine- / dual-specificity protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (IPR015940),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023106J08,J023135H07;Manual Curation=August 10%2C 2009;Literature_PMID=9870704,16087344,17766403;Oryzabase=6185;Expression=AK100591;TENOR=Os08t0484600-01;KEGG=Os08t0484600-01 (EC:2.7.11.11)
Chr08	irgsp1_rep	five_prime_UTR	23942304	23942524	.	+	.	Parent=Os08t0484600-01
Chr08	irgsp1_rep	five_prime_UTR	23943430	23943434	.	+	.	Parent=Os08t0484600-01
Chr08	irgsp1_rep	CDS	23943435	23943618	.	+	0	Parent=Os08t0484600-01
Chr08	irgsp1_rep	CDS	23943973	23944157	.	+	2	Parent=Os08t0484600-01
Chr08	irgsp1_rep	CDS	23944596	23944778	.	+	0	Parent=Os08t0484600-01
Chr08	irgsp1_rep	CDS	23944869	23945000	.	+	0	Parent=Os08t0484600-01
Chr08	irgsp1_rep	CDS	23945131	23945316	.	+	0	Parent=Os08t0484600-01
Chr08	irgsp1_rep	CDS	23945654	23945743	.	+	0	Parent=Os08t0484600-01
Chr08	irgsp1_rep	CDS	23945813	23945896	.	+	0	Parent=Os08t0484600-01
Chr08	irgsp1_rep	CDS	23945977	23946117	.	+	0	Parent=Os08t0484600-01
Chr08	irgsp1_rep	CDS	23946197	23946427	.	+	0	Parent=Os08t0484600-01
Chr08	irgsp1_rep	CDS	23946806	23946919	.	+	0	Parent=Os08t0484600-01
Chr08	irgsp1_rep	three_prime_UTR	23946920	23947375	.	+	.	Parent=Os08t0484600-01
Chr08	irgsp1_rep	mRNA	23943492	23946915	.	-	.	ID=Os08t0484633-00;Name=Os08t0484633-00;Locus_id=Os08g0484633;Note=Hypothetical protein.;Transcript_evidence=tplb0031c07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0484633-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	23946914	23946915	.	-	.	Parent=Os08t0484633-00
Chr08	irgsp1_rep	CDS	23946824	23946913	.	-	0	Parent=Os08t0484633-00
Chr08	irgsp1_rep	CDS	23946316	23946444	.	-	0	Parent=Os08t0484633-00
Chr08	irgsp1_rep	three_prime_UTR	23946161	23946315	.	-	.	Parent=Os08t0484633-00
Chr08	irgsp1_rep	three_prime_UTR	23945803	23945985	.	-	.	Parent=Os08t0484633-00
Chr08	irgsp1_rep	three_prime_UTR	23945111	23945395	.	-	.	Parent=Os08t0484633-00
Chr08	irgsp1_rep	three_prime_UTR	23944864	23944982	.	-	.	Parent=Os08t0484633-00
Chr08	irgsp1_rep	three_prime_UTR	23944594	23944774	.	-	.	Parent=Os08t0484633-00
Chr08	irgsp1_rep	three_prime_UTR	23943971	23944160	.	-	.	Parent=Os08t0484633-00
Chr08	irgsp1_rep	three_prime_UTR	23943492	23943622	.	-	.	Parent=Os08t0484633-00
Chr08	irgsp1_rep	mRNA	23951421	23952900	.	+	.	ID=Os08t0484700-01;Name=Os08t0484700-01;Locus_id=Os08g0484700;CGSNL Gene Symbol=MSL31;CGSNL Gene Name=MYB/SANT-LIKE 31;Oryzabase Gene Symbol Synonym(s)=OsMSL31;Oryzabase Gene Name Synonym(s)=Myb/SANT-LIKE 31;Note=Homeodomain-like containing protein.;Transcript_evidence=AK240933 (DDBJ%2C Best hit);ORF_evidence=F1DJQ9 (UniProt);NIAS_FLcDNA=J065041E01;Oryzabase=22965;TENOR=Os08t0484700-01;KEGG=Os08t0484700-01
Chr08	irgsp1_rep	five_prime_UTR	23951421	23951767	.	+	.	Parent=Os08t0484700-01
Chr08	irgsp1_rep	CDS	23951768	23952715	.	+	0	Parent=Os08t0484700-01
Chr08	irgsp1_rep	three_prime_UTR	23952716	23952900	.	+	.	Parent=Os08t0484700-01
Chr08	irgsp1_rep	mRNA	23956935	23960961	.	+	.	ID=Os08t0484800-00;Name=Os08t0484800-00;Locus_id=Os08g0484800;Note=Hypothetical conserved gene.;Transcript_evidence=FP092392 (DDBJ);ORF_evidence=Q6YTS7 (UniProt);TENOR=Os08t0484800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	23956935	23957223	.	+	0	Parent=Os08t0484800-00
Chr08	irgsp1_rep	CDS	23957325	23957776	.	+	2	Parent=Os08t0484800-00
Chr08	irgsp1_rep	CDS	23959311	23959421	.	+	0	Parent=Os08t0484800-00
Chr08	irgsp1_rep	CDS	23960417	23960590	.	+	0	Parent=Os08t0484800-00
Chr08	irgsp1_rep	three_prime_UTR	23960591	23960961	.	+	.	Parent=Os08t0484800-00
Chr08	irgsp1_rep	mRNA	23969407	23970640	.	-	.	ID=Os08t0485000-01;Name=Os08t0485000-01;Locus_id=Os08g0485000;Note=Similar to PHI-1.;Transcript_evidence=AK073011 (DDBJ%2C Best hit);ORF_evidence=NP_001150825.1 (RefSeq);InterPro=Phosphate-induced protein 1 (IPR006766);NIAS_FLcDNA=J023145I01;TENOR=Os08t0485000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	23970612	23970640	.	-	.	Parent=Os08t0485000-01
Chr08	irgsp1_rep	CDS	23970375	23970611	.	-	0	Parent=Os08t0485000-01
Chr08	irgsp1_rep	CDS	23969846	23970061	.	-	0	Parent=Os08t0485000-01
Chr08	irgsp1_rep	three_prime_UTR	23969407	23969845	.	-	.	Parent=Os08t0485000-01
Chr08	irgsp1_rep	mRNA	23983926	23984695	.	+	.	ID=Os08t0485300-00;Name=Os08t0485300-00;Locus_id=Os08g0485300;Note=Hypothetical conserved gene.;Transcript_evidence=EU964524 (DDBJ);ORF_evidence=Q6YTS0 (UniProt);InterPro=EVE domain (IPR002740),PUA-like domain (IPR015947);TENOR=Os08t0485300-00;KEGG=Os08t0485300-00
Chr08	irgsp1_rep	CDS	23983926	23984127	.	+	0	Parent=Os08t0485300-00
Chr08	irgsp1_rep	CDS	23984412	23984668	.	+	2	Parent=Os08t0485300-00
Chr08	irgsp1_rep	three_prime_UTR	23984669	23984695	.	+	.	Parent=Os08t0485300-00
Chr08	irgsp1_rep	mRNA	23987970	23995690	.	+	.	ID=Os08t0485400-01;Name=Os08t0485400-01;Locus_id=Os08g0485400;Note=Similar to Oxidoreductase.;Transcript_evidence=AK100705 (DDBJ%2C Best hit);ORF_evidence=B4F8B4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: nitronate monooxygenase activity (GO:0018580);InterPro=2-nitropropane dioxygenase%2C NPD (IPR004136),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J023114P18;Expression=AK100705;TENOR=Os08t0485400-01;KEGG=Os08t0485400-01
Chr08	irgsp1_rep	five_prime_UTR	23987970	23988203	.	+	.	Parent=Os08t0485400-01
Chr08	irgsp1_rep	CDS	23988204	23988338	.	+	0	Parent=Os08t0485400-01
Chr08	irgsp1_rep	CDS	23988450	23988662	.	+	0	Parent=Os08t0485400-01
Chr08	irgsp1_rep	CDS	23990304	23990399	.	+	0	Parent=Os08t0485400-01
Chr08	irgsp1_rep	CDS	23990662	23990807	.	+	0	Parent=Os08t0485400-01
Chr08	irgsp1_rep	CDS	23990905	23990935	.	+	1	Parent=Os08t0485400-01
Chr08	irgsp1_rep	three_prime_UTR	23990936	23991140	.	+	.	Parent=Os08t0485400-01
Chr08	irgsp1_rep	three_prime_UTR	23995174	23995690	.	+	.	Parent=Os08t0485400-01
Chr08	irgsp1_rep	mRNA	23988160	23996294	.	+	.	ID=Os08t0485400-02;Name=Os08t0485400-02;Locus_id=Os08g0485400;Note=Similar to 2-nitropropane dioxygenase-like protein.;Transcript_evidence=AK068155 (DDBJ%2C Best hit);ORF_evidence=B4F8B4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: nitronate monooxygenase activity (GO:0018580);InterPro=2-nitropropane dioxygenase%2C NPD (IPR004136),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J013131P05;Expression=AK068155;TENOR=Os08t0485400-02;KEGG=Os08t0485400-02
Chr08	irgsp1_rep	five_prime_UTR	23988160	23988203	.	+	.	Parent=Os08t0485400-02
Chr08	irgsp1_rep	CDS	23988204	23988338	.	+	0	Parent=Os08t0485400-02
Chr08	irgsp1_rep	CDS	23988450	23988662	.	+	0	Parent=Os08t0485400-02
Chr08	irgsp1_rep	CDS	23990304	23990399	.	+	0	Parent=Os08t0485400-02
Chr08	irgsp1_rep	CDS	23990662	23990807	.	+	0	Parent=Os08t0485400-02
Chr08	irgsp1_rep	CDS	23990921	23991140	.	+	1	Parent=Os08t0485400-02
Chr08	irgsp1_rep	CDS	23995179	23995211	.	+	0	Parent=Os08t0485400-02
Chr08	irgsp1_rep	three_prime_UTR	23995212	23996294	.	+	.	Parent=Os08t0485400-02
Chr08	irgsp1_rep	mRNA	23998787	24000176	.	+	.	ID=Os08t0485500-01;Name=Os08t0485500-01;Locus_id=Os08g0485500;RAP-DB Gene Symbol Synonym(s)=RAE2%2C OsEPFL1%2C EPFL1%2C GAD1;RAP-DB Gene Name Synonym(s)=REGULATOR OF AWN ELONGATION 2%2C EPIDERMAL PATTERNING FACTOR-LIKE 1%2C Regulator of Awn Elongation 2%2C "GRAIN NUMBER%2C GRAIN LENGTH AND AWN DEVELOPMENT1";CGSNL Gene Symbol=RAE2;CGSNL Gene Name=REGULATOR OF AWN ELONGATION 2;Oryzabase Gene Symbol Synonym(s)=OsEPFL1%2C EPFL1%2C GAD1%2C OsGAD1%2C OsRAE2%2C GLA%2C OsGLA%2C GAD1/RAE2;Oryzabase Gene Name Synonym(s)=EPIDERMAL PATTERNING FACTOR-LIKE 1%2C Regulator of Awn Elongation 2%2C "GRAIN NUMBER%2C GRAIN LENGTH AND AWN DEVELOPMENT1"%2C Grain Length and Awn Development;Note=Epidermal patterning factor-like 1 (EPFL1) protein%2C Small secretary signal peptide%2C Regulation of awn elongation (Dysfunctional RAE2 protein)%2C Regulation of grain number%2C grain length%2C and awn development;Transcript_evidence=AK241136;ORF_evidence=Q6YTR8;NIAS_FLcDNA=J065099B17;Manual Curation=November 16%2C 2016;Literature_PMID=27466405,27634315;Oryzabase=21251;TENOR=Os08t0485500-01
Chr08	irgsp1_rep	five_prime_UTR	23998787	23999135	.	+	.	Parent=Os08t0485500-01
Chr08	irgsp1_rep	CDS	23999136	23999270	.	+	0	Parent=Os08t0485500-01
Chr08	irgsp1_rep	CDS	23999381	23999596	.	+	0	Parent=Os08t0485500-01
Chr08	irgsp1_rep	three_prime_UTR	23999597	24000176	.	+	.	Parent=Os08t0485500-01
Chr08	irgsp1_rep	mRNA	24002873	24011116	.	+	.	ID=Os08t0485600-01;Name=Os08t0485600-01;Locus_id=Os08g0485600;Note=Methyl-CpG DNA binding domain containing protein.;Transcript_evidence=AK068243 (DDBJ%2C Best hit);ORF_evidence=B8BBU4 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Methyl-CpG DNA binding (IPR001739),Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J013149G12;Expression=AK068243;TENOR=Os08t0485600-01;KEGG=Os08t0485600-01
Chr08	irgsp1_rep	five_prime_UTR	24002873	24003023	.	+	.	Parent=Os08t0485600-01
Chr08	irgsp1_rep	CDS	24003024	24003688	.	+	0	Parent=Os08t0485600-01
Chr08	irgsp1_rep	CDS	24005268	24005409	.	+	1	Parent=Os08t0485600-01
Chr08	irgsp1_rep	CDS	24005484	24006728	.	+	0	Parent=Os08t0485600-01
Chr08	irgsp1_rep	CDS	24007937	24008071	.	+	0	Parent=Os08t0485600-01
Chr08	irgsp1_rep	three_prime_UTR	24008072	24009140	.	+	.	Parent=Os08t0485600-01
Chr08	irgsp1_rep	three_prime_UTR	24010554	24011116	.	+	.	Parent=Os08t0485600-01
Chr08	irgsp1_rep	mRNA	24002874	24008410	.	+	.	ID=Os08t0485600-02;Name=Os08t0485600-02;Locus_id=Os08g0485600;Note=Methyl-CpG DNA binding domain containing protein.;Transcript_evidence=AK064883 (DDBJ%2C Best hit);ORF_evidence=B8BBU4 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Methyl-CpG DNA binding (IPR001739),Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J013000K02;Expression=AK064883;TENOR=Os08t0485600-02;KEGG=Os08t0485600-02
Chr08	irgsp1_rep	five_prime_UTR	24002874	24003023	.	+	.	Parent=Os08t0485600-02
Chr08	irgsp1_rep	CDS	24003024	24003688	.	+	0	Parent=Os08t0485600-02
Chr08	irgsp1_rep	CDS	24005268	24005409	.	+	1	Parent=Os08t0485600-02
Chr08	irgsp1_rep	CDS	24005484	24006728	.	+	0	Parent=Os08t0485600-02
Chr08	irgsp1_rep	CDS	24007937	24008071	.	+	0	Parent=Os08t0485600-02
Chr08	irgsp1_rep	three_prime_UTR	24008072	24008410	.	+	.	Parent=Os08t0485600-02
Chr08	irgsp1_rep	mRNA	24005383	24006613	.	+	.	ID=Os08t0485600-03;Name=Os08t0485600-03;Locus_id=Os08g0485600;Note=Hypothetical conserved gene.;Transcript_evidence=AK103243 (DDBJ%2C Best hit);ORF_evidence=B8BBU4 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J033123I06;TENOR=Os08t0485600-03
Chr08	irgsp1_rep	CDS	24005383	24005409	.	+	0	Parent=Os08t0485600-03
Chr08	irgsp1_rep	CDS	24005484	24006613	.	+	0	Parent=Os08t0485600-03
Chr08	irgsp1_rep	mRNA	24005760	24009485	.	+	.	ID=Os08t0485600-04;Name=Os08t0485600-04;Locus_id=Os08g0485600;Note=Hypothetical conserved gene.;Transcript_evidence=AK106432 (DDBJ%2C Best hit);ORF_evidence=B8BBU4 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087);NIAS_FLcDNA=002-103-C07;Expression=AK106432;TENOR=Os08t0485600-04;KEGG=Os08t0485600-04
Chr08	irgsp1_rep	CDS	24005760	24006728	.	+	0	Parent=Os08t0485600-04
Chr08	irgsp1_rep	CDS	24008522	24008533	.	+	0	Parent=Os08t0485600-04
Chr08	irgsp1_rep	three_prime_UTR	24008534	24009485	.	+	.	Parent=Os08t0485600-04
Chr08	irgsp1_rep	mRNA	24015062	24020655	.	+	.	ID=Os08t0485700-01;Name=Os08t0485700-01;Locus_id=Os08g0485700;Note=Methyl-CpG DNA binding domain containing protein.;Transcript_evidence=AK069097 (DDBJ%2C Best hit);ORF_evidence=B8BBU6 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Methyl-CpG DNA binding (IPR001739),Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J023004M17;Expression=AK069097;TENOR=Os08t0485700-01;KEGG=Os08t0485700-01
Chr08	irgsp1_rep	five_prime_UTR	24015062	24015221	.	+	.	Parent=Os08t0485700-01
Chr08	irgsp1_rep	CDS	24015222	24015904	.	+	0	Parent=Os08t0485700-01
Chr08	irgsp1_rep	CDS	24017320	24017461	.	+	1	Parent=Os08t0485700-01
Chr08	irgsp1_rep	CDS	24017535	24018779	.	+	0	Parent=Os08t0485700-01
Chr08	irgsp1_rep	CDS	24019695	24020282	.	+	0	Parent=Os08t0485700-01
Chr08	irgsp1_rep	three_prime_UTR	24020283	24020655	.	+	.	Parent=Os08t0485700-01
Chr08	irgsp1_rep	mRNA	24015770	24020559	.	+	.	ID=Os08t0485700-02;Name=Os08t0485700-02;Locus_id=Os08g0485700;Note=Hypothetical conserved gene.;Transcript_evidence=AK068131 (DDBJ%2C Best hit);ORF_evidence=B8BBU6 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Methyl-CpG DNA binding (IPR001739),Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J013130L03;Expression=AK068131;TENOR=Os08t0485700-02;KEGG=Os08t0485700-02
Chr08	irgsp1_rep	five_prime_UTR	24015770	24015770	.	+	.	Parent=Os08t0485700-02
Chr08	irgsp1_rep	CDS	24015771	24015904	.	+	0	Parent=Os08t0485700-02
Chr08	irgsp1_rep	CDS	24017320	24017461	.	+	1	Parent=Os08t0485700-02
Chr08	irgsp1_rep	CDS	24017535	24018779	.	+	0	Parent=Os08t0485700-02
Chr08	irgsp1_rep	CDS	24019695	24020282	.	+	0	Parent=Os08t0485700-02
Chr08	irgsp1_rep	three_prime_UTR	24020283	24020559	.	+	.	Parent=Os08t0485700-02
Chr08	irgsp1_rep	mRNA	24020865	24022693	.	-	.	ID=Os08t0485800-01;Name=Os08t0485800-01;Locus_id=Os08g0485800;Note=Barwin-related endoglucanase domain containing protein.;Transcript_evidence=AK242586 (DDBJ%2C Best hit);ORF_evidence=NP_001148968.1 (RefSeq);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Expansin/pollen allergen%2C DPBB domain (IPR007112),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);NIAS_FLcDNA=J090010P05;TENOR=Os08t0485800-01;KEGG=Os08t0485800-01
Chr08	irgsp1_rep	five_prime_UTR	24022628	24022693	.	-	.	Parent=Os08t0485800-01
Chr08	irgsp1_rep	CDS	24022516	24022627	.	-	0	Parent=Os08t0485800-01
Chr08	irgsp1_rep	CDS	24021919	24022207	.	-	2	Parent=Os08t0485800-01
Chr08	irgsp1_rep	CDS	24021219	24021231	.	-	1	Parent=Os08t0485800-01
Chr08	irgsp1_rep	three_prime_UTR	24020865	24021218	.	-	.	Parent=Os08t0485800-01
Chr08	irgsp1_rep	mRNA	24023544	24027173	.	-	.	ID=Os08t0485900-01;Name=Os08t0485900-01;Locus_id=Os08g0485900;Note=Haloacid dehalogenase-like hydrolase domain containing protein.;Transcript_evidence=AK110716 (DDBJ%2C Best hit);ORF_evidence=NP_568077.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity (GO:0016787);InterPro=Haloacid dehalogenase-like hydrolase (IPR005834),HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 (IPR006402),HAD-like domain (IPR023214);NIAS_FLcDNA=002-170-D07;Expression=AK110716;TENOR=Os08t0485900-01;KEGG=Os08t0485900-01
Chr08	irgsp1_rep	five_prime_UTR	24027141	24027173	.	-	.	Parent=Os08t0485900-01
Chr08	irgsp1_rep	CDS	24026737	24027140	.	-	0	Parent=Os08t0485900-01
Chr08	irgsp1_rep	CDS	24026055	24026149	.	-	1	Parent=Os08t0485900-01
Chr08	irgsp1_rep	CDS	24025737	24025780	.	-	2	Parent=Os08t0485900-01
Chr08	irgsp1_rep	CDS	24025590	24025640	.	-	0	Parent=Os08t0485900-01
Chr08	irgsp1_rep	CDS	24025257	24025331	.	-	0	Parent=Os08t0485900-01
Chr08	irgsp1_rep	CDS	24025133	24025166	.	-	0	Parent=Os08t0485900-01
Chr08	irgsp1_rep	CDS	24024606	24024661	.	-	2	Parent=Os08t0485900-01
Chr08	irgsp1_rep	CDS	24024442	24024501	.	-	0	Parent=Os08t0485900-01
Chr08	irgsp1_rep	CDS	24024307	24024366	.	-	0	Parent=Os08t0485900-01
Chr08	irgsp1_rep	CDS	24024188	24024234	.	-	0	Parent=Os08t0485900-01
Chr08	irgsp1_rep	CDS	24024074	24024122	.	-	1	Parent=Os08t0485900-01
Chr08	irgsp1_rep	three_prime_UTR	24024017	24024073	.	-	.	Parent=Os08t0485900-01
Chr08	irgsp1_rep	three_prime_UTR	24023544	24023924	.	-	.	Parent=Os08t0485900-01
Chr08	irgsp1_rep	mRNA	24028945	24029468	.	-	.	ID=Os08t0486000-01;Name=Os08t0486000-01;Locus_id=Os08g0486000;Note=Non-protein coding transcript.;Transcript_evidence=AK108407 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-142-G10;TENOR=Os08t0486000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	exon	24028945	24029468	.	-	.	Parent=Os08t0486000-01
Chr08	irgsp1_rep	mRNA	24037055	24039260	.	+	.	ID=Os08t0486100-01;Name=Os08t0486100-01;Locus_id=Os08g0486100;Note=Similar to Potential copper-transporting ATPase PAA1 (EC 3.6.3.4).;Transcript_evidence=AK059217 (DDBJ%2C Best hit);ORF_evidence=XP_002304082.1 (RefSeq);GO=Biological Process: cation transport (GO:0006812),Biological Process: metabolic process (GO:0008152),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662);InterPro=ATPase%2C P-type%2C H+ transporting proton pump (IPR000695),ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),Haloacid dehalogenase-like hydrolase (IPR005834),HAD-like domain (IPR023214);NIAS_FLcDNA=001-024-C09;Expression=AK059217;TENOR=Os08t0486100-01;KEGG=Os08t0486100-01 (EC:3.6.3.4)
Chr08	irgsp1_rep	five_prime_UTR	24037055	24037056	.	+	.	Parent=Os08t0486100-01
Chr08	irgsp1_rep	CDS	24037057	24037134	.	+	0	Parent=Os08t0486100-01
Chr08	irgsp1_rep	CDS	24037876	24038079	.	+	0	Parent=Os08t0486100-01
Chr08	irgsp1_rep	CDS	24038245	24038325	.	+	0	Parent=Os08t0486100-01
Chr08	irgsp1_rep	CDS	24038538	24038777	.	+	0	Parent=Os08t0486100-01
Chr08	irgsp1_rep	three_prime_UTR	24038778	24039260	.	+	.	Parent=Os08t0486100-01
Chr08	irgsp1_rep	mRNA	24040355	24043301	.	-	.	ID=Os08t0486200-01;Name=Os08t0486200-01;Locus_id=Os08g0486200;CGSNL Gene Symbol=SC35A;Oryzabase Gene Symbol Synonym(s)=Os-SC34%2C OsSC34%2C SC34%2C Os-SC35a%2C OsSC35a;Oryzabase Gene Name Synonym(s)=SC subfamily protein 35a;Note=Similar to Splicing factor SC35.;Transcript_evidence=AK103676 (DDBJ%2C Best hit);ORF_evidence=B6UG76 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033136B19;Oryzabase=22738;Expression=AK103676;TENOR=Os08t0486200-01;KEGG=Os08t0486200-01
Chr08	irgsp1_rep	five_prime_UTR	24043182	24043301	.	-	.	Parent=Os08t0486200-01
Chr08	irgsp1_rep	CDS	24043106	24043181	.	-	0	Parent=Os08t0486200-01
Chr08	irgsp1_rep	CDS	24042933	24043011	.	-	2	Parent=Os08t0486200-01
Chr08	irgsp1_rep	CDS	24042763	24042842	.	-	1	Parent=Os08t0486200-01
Chr08	irgsp1_rep	CDS	24042597	24042663	.	-	2	Parent=Os08t0486200-01
Chr08	irgsp1_rep	CDS	24041647	24041718	.	-	1	Parent=Os08t0486200-01
Chr08	irgsp1_rep	CDS	24041020	24041331	.	-	1	Parent=Os08t0486200-01
Chr08	irgsp1_rep	CDS	24040765	24040942	.	-	1	Parent=Os08t0486200-01
Chr08	irgsp1_rep	CDS	24040662	24040667	.	-	0	Parent=Os08t0486200-01
Chr08	irgsp1_rep	three_prime_UTR	24040355	24040661	.	-	.	Parent=Os08t0486200-01
Chr08	irgsp1_rep	mRNA	24040156	24043292	.	-	.	ID=Os08t0486200-02;Name=Os08t0486200-02;Locus_id=Os08g0486200;CGSNL Gene Symbol=SC35A;Oryzabase Gene Symbol Synonym(s)=Os-SC34%2C OsSC34%2C SC34%2C Os-SC35a%2C OsSC35a;Oryzabase Gene Name Synonym(s)=SC subfamily protein 35a;Note=Similar to Splicing factor SC35.;Transcript_evidence=AK064030 (DDBJ%2C Best hit);ORF_evidence=B6UG76 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-125-B07;Oryzabase=22738;Expression=AK064030;TENOR=Os08t0486200-02;KEGG=Os08t0486200-02
Chr08	irgsp1_rep	five_prime_UTR	24043182	24043292	.	-	.	Parent=Os08t0486200-02
Chr08	irgsp1_rep	CDS	24043106	24043181	.	-	0	Parent=Os08t0486200-02
Chr08	irgsp1_rep	CDS	24042933	24043011	.	-	2	Parent=Os08t0486200-02
Chr08	irgsp1_rep	CDS	24042763	24042842	.	-	1	Parent=Os08t0486200-02
Chr08	irgsp1_rep	CDS	24042597	24042663	.	-	2	Parent=Os08t0486200-02
Chr08	irgsp1_rep	CDS	24041647	24041718	.	-	1	Parent=Os08t0486200-02
Chr08	irgsp1_rep	CDS	24041020	24041331	.	-	1	Parent=Os08t0486200-02
Chr08	irgsp1_rep	CDS	24040765	24040942	.	-	1	Parent=Os08t0486200-02
Chr08	irgsp1_rep	CDS	24040662	24040667	.	-	0	Parent=Os08t0486200-02
Chr08	irgsp1_rep	three_prime_UTR	24040532	24040661	.	-	.	Parent=Os08t0486200-02
Chr08	irgsp1_rep	three_prime_UTR	24040156	24040430	.	-	.	Parent=Os08t0486200-02
Chr08	irgsp1_rep	mRNA	24040240	24040659	.	-	.	ID=Os08t0486200-03;Name=Os08t0486200-03;Locus_id=Os08g0486200;CGSNL Gene Symbol=SC35A;Oryzabase Gene Symbol Synonym(s)=Os-SC34%2C OsSC34%2C SC34%2C Os-SC35a%2C OsSC35a;Oryzabase Gene Name Synonym(s)=SC subfamily protein 35a;Note=Non-protein coding transcript.;Transcript_evidence=AK063813 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-121-H01;Oryzabase=22738;TENOR=Os08t0486200-03
Chr08	irgsp1_rep	exon	24040240	24040659	.	-	.	Parent=Os08t0486200-03
Chr08	irgsp1_rep	mRNA	24044079	24044645	.	-	.	ID=Os08t0486233-00;Name=Os08t0486233-00;Locus_id=Os08g0486233;Note=Similar to EIL transcription factor.;Transcript_evidence=CT835917 (DDBJ%2C Best hit);ORF_evidence=Q8W3L9 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Ethylene insensitive 3-like protein%2C DNA-binding domain (IPR023278);TENOR=Os08t0486233-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	24044487	24044645	.	-	.	Parent=Os08t0486233-00
Chr08	irgsp1_rep	CDS	24044274	24044486	.	-	0	Parent=Os08t0486233-00
Chr08	irgsp1_rep	three_prime_UTR	24044079	24044273	.	-	.	Parent=Os08t0486233-00
Chr08	irgsp1_rep	mRNA	24046145	24049480	.	-	.	ID=Os08t0486266-01;Name=Os08t0486266-01;Locus_id=Os08g0486266;Note=Conserved hypothetical protein.;Transcript_evidence=AK288793 (DDBJ%2C Best hit);ORF_evidence=Q53LF9 (UniProt);NIAS_FLcDNA=J090070C08;TENOR=Os08t0486266-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	24046447	24049480	.	-	.	Parent=Os08t0486266-01
Chr08	irgsp1_rep	CDS	24046366	24046446	.	-	0	Parent=Os08t0486266-01
Chr08	irgsp1_rep	three_prime_UTR	24046145	24046365	.	-	.	Parent=Os08t0486266-01
Chr08	irgsp1_rep	mRNA	24051708	24053208	.	-	.	ID=Os08t0486300-00;Name=Os08t0486300-00;Locus_id=Os08g0486300;Oryzabase Gene Name Synonym(s)=OsMyb4-like protein;Note=Similar to P-type R2R3 Myb protein (Fragment).;Transcript_evidence=BT033636 (DDBJ);ORF_evidence=Q8S416 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);Oryzabase=15607;TENOR=Os08t0486300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	24053208	24053208	.	-	.	Parent=Os08t0486300-00
Chr08	irgsp1_rep	CDS	24052988	24053207	.	-	0	Parent=Os08t0486300-00
Chr08	irgsp1_rep	CDS	24052622	24052751	.	-	2	Parent=Os08t0486300-00
Chr08	irgsp1_rep	CDS	24051708	24052518	.	-	1	Parent=Os08t0486300-00
Chr08	irgsp1_rep	mRNA	24051856	24052521	.	+	.	ID=Os08t0486400-00;Name=Os08t0486400-00;Locus_id=Os08g0486400;Note=Hypothetical protein.;Transcript_evidence=EU971393 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0486400-00
Chr08	irgsp1_rep	five_prime_UTR	24051856	24052022	.	+	.	Parent=Os08t0486400-00
Chr08	irgsp1_rep	CDS	24052023	24052296	.	+	0	Parent=Os08t0486400-00
Chr08	irgsp1_rep	CDS	24052368	24052435	.	+	2	Parent=Os08t0486400-00
Chr08	irgsp1_rep	three_prime_UTR	24052436	24052521	.	+	.	Parent=Os08t0486400-00
Chr08	irgsp1_rep	mRNA	24060598	24070778	.	-	.	ID=Os08t0486500-01;Name=Os08t0486500-01;Locus_id=Os08g0486500;Note=Conserved hypothetical protein.;Transcript_evidence=AK111410 (DDBJ%2C Best hit);ORF_evidence=B9G1H9 (UniProt);NIAS_FLcDNA=002-182-F03;TENOR=Os08t0486500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	24070051	24070778	.	-	.	Parent=Os08t0486500-01
Chr08	irgsp1_rep	five_prime_UTR	24068741	24068921	.	-	.	Parent=Os08t0486500-01
Chr08	irgsp1_rep	five_prime_UTR	24061053	24061080	.	-	.	Parent=Os08t0486500-01
Chr08	irgsp1_rep	CDS	24060780	24061052	.	-	0	Parent=Os08t0486500-01
Chr08	irgsp1_rep	three_prime_UTR	24060598	24060779	.	-	.	Parent=Os08t0486500-01
Chr08	irgsp1_rep	mRNA	24073711	24074599	.	+	.	ID=Os08t0486700-01;Name=Os08t0486700-01;Locus_id=Os08g0486700;Note=Conserved hypothetical protein.;Transcript_evidence=AK241195 (DDBJ%2C Best hit);ORF_evidence=NP_001062097.1 (RefSeq);NIAS_FLcDNA=J065121F09;TENOR=Os08t0486700-01;KEGG=Os08t0486700-01
Chr08	irgsp1_rep	five_prime_UTR	24073711	24073839	.	+	.	Parent=Os08t0486700-01
Chr08	irgsp1_rep	CDS	24073840	24074334	.	+	0	Parent=Os08t0486700-01
Chr08	irgsp1_rep	three_prime_UTR	24074335	24074599	.	+	.	Parent=Os08t0486700-01
Chr08	irgsp1_rep	mRNA	24073966	24074629	.	-	.	ID=Os08t0486750-00;Name=Os08t0486750-00;Locus_id=Os08g0486750;Note=Non-protein coding transcript.;Transcript_evidence=AK363293 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0486750-00
Chr08	irgsp1_rep	exon	24074214	24074629	.	-	.	Parent=Os08t0486750-00
Chr08	irgsp1_rep	exon	24073966	24074104	.	-	.	Parent=Os08t0486750-00
Chr08	irgsp1_rep	mRNA	24075181	24076612	.	-	.	ID=Os08t0486801-01;Name=Os08t0486801-01;Locus_id=Os08g0486801;Note=Non-protein coding transcript.;Transcript_evidence=AK241869 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065217L23;TENOR=Os08t0486801-01
Chr08	irgsp1_rep	exon	24076461	24076612	.	-	.	Parent=Os08t0486801-01
Chr08	irgsp1_rep	exon	24075681	24075795	.	-	.	Parent=Os08t0486801-01
Chr08	irgsp1_rep	exon	24075181	24075583	.	-	.	Parent=Os08t0486801-01
Chr08	irgsp1_rep	mRNA	24077066	24077573	.	+	.	ID=Os08t0486867-01;Name=Os08t0486867-01;Locus_id=Os08g0486867;Note=Conserved hypothetical protein.;Transcript_evidence=AK243168 (DDBJ%2C Best hit);ORF_evidence=Q75LB0 (UniProt);NIAS_FLcDNA=J100035H05;TENOR=Os08t0486867-01
Chr08	irgsp1_rep	five_prime_UTR	24077066	24077067	.	+	.	Parent=Os08t0486867-01
Chr08	irgsp1_rep	CDS	24077068	24077271	.	+	0	Parent=Os08t0486867-01
Chr08	irgsp1_rep	three_prime_UTR	24077272	24077573	.	+	.	Parent=Os08t0486867-01
Chr08	irgsp1_rep	mRNA	24077729	24078001	.	+	.	ID=Os08t0486933-00;Name=Os08t0486933-00;Locus_id=Os08g0486933;Note=Similar to Peptide transporter-like protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6YS05 (UniProt);TENOR=Os08t0486933-00
Chr08	irgsp1_rep	CDS	24077729	24078001	.	+	0	Parent=Os08t0486933-00
Chr08	irgsp1_rep	mRNA	24079623	24082991	.	+	.	ID=Os08t0487000-01;Name=Os08t0487000-01;Locus_id=Os08g0487000;Note=Hypothetical conserved gene.;Transcript_evidence=AK110869 (DDBJ%2C Best hit);ORF_evidence=B8BBV9 (UniProt);NIAS_FLcDNA=002-172-E04;Expression=AK110869;TENOR=Os08t0487000-01;KEGG=Os08t0487000-01
Chr08	irgsp1_rep	five_prime_UTR	24079623	24079689	.	+	.	Parent=Os08t0487000-01
Chr08	irgsp1_rep	CDS	24079690	24079788	.	+	0	Parent=Os08t0487000-01
Chr08	irgsp1_rep	CDS	24079890	24079960	.	+	0	Parent=Os08t0487000-01
Chr08	irgsp1_rep	CDS	24081003	24081270	.	+	1	Parent=Os08t0487000-01
Chr08	irgsp1_rep	three_prime_UTR	24081271	24081688	.	+	.	Parent=Os08t0487000-01
Chr08	irgsp1_rep	three_prime_UTR	24081772	24082991	.	+	.	Parent=Os08t0487000-01
Chr08	irgsp1_rep	mRNA	24079677	24082209	.	+	.	ID=Os08t0487000-02;Name=Os08t0487000-02;Locus_id=Os08g0487000;Note=Conserved hypothetical protein.;Transcript_evidence=AK103460 (DDBJ%2C Best hit);ORF_evidence=B8BBV9 (UniProt);NIAS_FLcDNA=J033129L23;Expression=AK103460;TENOR=Os08t0487000-02;KEGG=Os08t0487000-02
Chr08	irgsp1_rep	five_prime_UTR	24079677	24079689	.	+	.	Parent=Os08t0487000-02
Chr08	irgsp1_rep	CDS	24079690	24079788	.	+	0	Parent=Os08t0487000-02
Chr08	irgsp1_rep	CDS	24079890	24079960	.	+	0	Parent=Os08t0487000-02
Chr08	irgsp1_rep	CDS	24081003	24081106	.	+	1	Parent=Os08t0487000-02
Chr08	irgsp1_rep	CDS	24081637	24081688	.	+	2	Parent=Os08t0487000-02
Chr08	irgsp1_rep	CDS	24081772	24081919	.	+	1	Parent=Os08t0487000-02
Chr08	irgsp1_rep	three_prime_UTR	24081920	24082209	.	+	.	Parent=Os08t0487000-02
Chr08	irgsp1_rep	mRNA	24079682	24079916	.	-	.	ID=Os08t0487050-00;Name=Os08t0487050-00;Locus_id=Os08g0487050;Note=Hypothetical protein.;Transcript_evidence=EU946896 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0487050-00
Chr08	irgsp1_rep	five_prime_UTR	24079915	24079916	.	-	.	Parent=Os08t0487050-00
Chr08	irgsp1_rep	CDS	24079682	24079914	.	-	0	Parent=Os08t0487050-00
Chr08	irgsp1_rep	mRNA	24083101	24084735	.	-	.	ID=Os08t0487100-01;Name=Os08t0487100-01;Locus_id=Os08g0487100;CGSNL Gene Symbol=BZIP67;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 67;Oryzabase Gene Symbol Synonym(s)=OsbZIP67;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 67;Note=Similar to BZIP transcription factor BZI-2.;Transcript_evidence=AK107150 (DDBJ%2C Best hit);ORF_evidence=NP_001152649.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);NIAS_FLcDNA=002-124-E02;Oryzabase=10147;Expression=AK107150;TENOR=Os08t0487100-01;KEGG=Os08t0487100-01
Chr08	irgsp1_rep	five_prime_UTR	24084597	24084735	.	-	.	Parent=Os08t0487100-01
Chr08	irgsp1_rep	CDS	24083904	24084596	.	-	0	Parent=Os08t0487100-01
Chr08	irgsp1_rep	three_prime_UTR	24083101	24083903	.	-	.	Parent=Os08t0487100-01
Chr08	irgsp1_rep	mRNA	24110031	24110288	.	-	.	ID=Os08t0487400-00;Name=Os08t0487400-00;Locus_id=Os08g0487400;Note=Conserved hypothetical protein.;Transcript_evidence=EU949564 (DDBJ);ORF_evidence=B8B3K1 (UniProt);TENOR=Os08t0487400-00
Chr08	irgsp1_rep	five_prime_UTR	24110202	24110288	.	-	.	Parent=Os08t0487400-00
Chr08	irgsp1_rep	CDS	24110031	24110201	.	-	0	Parent=Os08t0487400-00
Chr08	irgsp1_rep	mRNA	24113051	24114250	.	-	.	ID=Os08t0487500-01;Name=Os08t0487500-01;Locus_id=Os08g0487500;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK066326 (DDBJ%2C Best hit);ORF_evidence=B6U108 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J013059I17;Expression=AK066326;TENOR=Os08t0487500-01;KEGG=Os08t0487500-01
Chr08	irgsp1_rep	five_prime_UTR	24114210	24114250	.	-	.	Parent=Os08t0487500-01
Chr08	irgsp1_rep	CDS	24113394	24114209	.	-	0	Parent=Os08t0487500-01
Chr08	irgsp1_rep	three_prime_UTR	24113051	24113393	.	-	.	Parent=Os08t0487500-01
Chr08	irgsp1_rep	mRNA	24121898	24123906	.	+	.	ID=Os08t0487700-00;Name=Os08t0487700-00;Locus_id=Os08g0487700;Oryzabase Gene Symbol Synonym(s)=OsbHLH087;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 087;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001062102.1 (RefSeq);InterPro=Helix-loop-helix DNA-binding (IPR011598);Oryzabase=15374;TENOR=Os08t0487700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	24121898	24122239	.	+	0	Parent=Os08t0487700-00
Chr08	irgsp1_rep	CDS	24122342	24122575	.	+	0	Parent=Os08t0487700-00
Chr08	irgsp1_rep	CDS	24122903	24122971	.	+	0	Parent=Os08t0487700-00
Chr08	irgsp1_rep	CDS	24123068	24123145	.	+	0	Parent=Os08t0487700-00
Chr08	irgsp1_rep	CDS	24123267	24123461	.	+	0	Parent=Os08t0487700-00
Chr08	irgsp1_rep	CDS	24123793	24123906	.	+	0	Parent=Os08t0487700-00
Chr08	irgsp1_rep	mRNA	24124862	24129488	.	-	.	ID=Os08t0487800-01;Name=Os08t0487800-01;Locus_id=Os08g0487800;Note=Similar to Heat-shock protein precursor.;Transcript_evidence=AK122102 (DDBJ%2C Best hit);ORF_evidence=Q43638 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: response to stress (GO:0006950),Molecular Function: ATP binding (GO:0005524),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein Hsp90 (IPR001404),ATPase-like%2C ATP-binding domain (IPR003594),Heat shock protein Hsp90%2C conserved site (IPR019805),Ribosomal protein S5 domain 2-type fold (IPR020568),Heat shock protein Hsp90%2C N-terminal (IPR020575);NIAS_FLcDNA=J033125K17;Expression=AK122102;TENOR=Os08t0487800-01;KEGG=Os08t0487800-01
Chr08	irgsp1_rep	five_prime_UTR	24129361	24129488	.	-	.	Parent=Os08t0487800-01
Chr08	irgsp1_rep	CDS	24129112	24129360	.	-	0	Parent=Os08t0487800-01
Chr08	irgsp1_rep	CDS	24128827	24128900	.	-	0	Parent=Os08t0487800-01
Chr08	irgsp1_rep	CDS	24128564	24128689	.	-	1	Parent=Os08t0487800-01
Chr08	irgsp1_rep	CDS	24128381	24128474	.	-	1	Parent=Os08t0487800-01
Chr08	irgsp1_rep	CDS	24128176	24128259	.	-	0	Parent=Os08t0487800-01
Chr08	irgsp1_rep	CDS	24127927	24128070	.	-	0	Parent=Os08t0487800-01
Chr08	irgsp1_rep	CDS	24127705	24127821	.	-	0	Parent=Os08t0487800-01
Chr08	irgsp1_rep	CDS	24127539	24127583	.	-	0	Parent=Os08t0487800-01
Chr08	irgsp1_rep	CDS	24127377	24127454	.	-	0	Parent=Os08t0487800-01
Chr08	irgsp1_rep	CDS	24127124	24127228	.	-	0	Parent=Os08t0487800-01
Chr08	irgsp1_rep	CDS	24126902	24127042	.	-	0	Parent=Os08t0487800-01
Chr08	irgsp1_rep	CDS	24126691	24126783	.	-	0	Parent=Os08t0487800-01
Chr08	irgsp1_rep	CDS	24126501	24126578	.	-	0	Parent=Os08t0487800-01
Chr08	irgsp1_rep	CDS	24126169	24126423	.	-	0	Parent=Os08t0487800-01
Chr08	irgsp1_rep	CDS	24125979	24126081	.	-	0	Parent=Os08t0487800-01
Chr08	irgsp1_rep	CDS	24125719	24125890	.	-	2	Parent=Os08t0487800-01
Chr08	irgsp1_rep	CDS	24125541	24125646	.	-	1	Parent=Os08t0487800-01
Chr08	irgsp1_rep	CDS	24125364	24125453	.	-	0	Parent=Os08t0487800-01
Chr08	irgsp1_rep	CDS	24125076	24125279	.	-	0	Parent=Os08t0487800-01
Chr08	irgsp1_rep	three_prime_UTR	24124862	24125075	.	-	.	Parent=Os08t0487800-01
Chr08	irgsp1_rep	mRNA	24125138	24126358	.	+	.	ID=Os08t0487850-00;Name=Os08t0487850-00;Locus_id=Os08g0487850;Note=Non-protein coding transcript.;Transcript_evidence=BT017162 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0487850-00
Chr08	irgsp1_rep	exon	24125138	24125352	.	+	.	Parent=Os08t0487850-00
Chr08	irgsp1_rep	exon	24125528	24125644	.	+	.	Parent=Os08t0487850-00
Chr08	irgsp1_rep	exon	24125712	24125857	.	+	.	Parent=Os08t0487850-00
Chr08	irgsp1_rep	exon	24125948	24126110	.	+	.	Parent=Os08t0487850-00
Chr08	irgsp1_rep	exon	24126199	24126358	.	+	.	Parent=Os08t0487850-00
Chr08	irgsp1_rep	mRNA	24129929	24134704	.	-	.	ID=Os08t0487900-01;Name=Os08t0487900-01;Locus_id=Os08g0487900;Note=Esterase/lipase/thioesterase domain containing protein.;Transcript_evidence=AK109668 (DDBJ%2C Best hit);ORF_evidence=NP_001150405.1 (RefSeq);NIAS_FLcDNA=002-145-A08;Expression=AK109668;TENOR=Os08t0487900-01;KEGG=Os08t0487900-01
Chr08	irgsp1_rep	five_prime_UTR	24134494	24134704	.	-	.	Parent=Os08t0487900-01
Chr08	irgsp1_rep	CDS	24134150	24134493	.	-	0	Parent=Os08t0487900-01
Chr08	irgsp1_rep	CDS	24131610	24131646	.	-	1	Parent=Os08t0487900-01
Chr08	irgsp1_rep	CDS	24131083	24131319	.	-	0	Parent=Os08t0487900-01
Chr08	irgsp1_rep	CDS	24130944	24130991	.	-	0	Parent=Os08t0487900-01
Chr08	irgsp1_rep	CDS	24130366	24130853	.	-	0	Parent=Os08t0487900-01
Chr08	irgsp1_rep	CDS	24130089	24130179	.	-	1	Parent=Os08t0487900-01
Chr08	irgsp1_rep	three_prime_UTR	24129929	24130088	.	-	.	Parent=Os08t0487900-01
Chr08	irgsp1_rep	mRNA	24138061	24138525	.	+	.	ID=Os08t0488100-00;Name=Os08t0488100-00;Locus_id=Os08g0488100;Note=Similar to Cortical cell-delineating protein.;Transcript_evidence=AK366670 (DDBJ);ORF_evidence=B6U436 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);TENOR=Os08t0488100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	24138061	24138348	.	+	.	Parent=Os08t0488100-00
Chr08	irgsp1_rep	CDS	24138349	24138525	.	+	0	Parent=Os08t0488100-00
Chr08	irgsp1_rep	mRNA	24156812	24158302	.	+	.	ID=Os08t0488700-00;Name=Os08t0488700-00;Locus_id=Os08g0488700;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001062105.2 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);TENOR=Os08t0488700-00;KEGG=Os08t0488700-00
Chr08	irgsp1_rep	CDS	24156812	24157075	.	+	0	Parent=Os08t0488700-00
Chr08	irgsp1_rep	CDS	24157250	24157450	.	+	0	Parent=Os08t0488700-00
Chr08	irgsp1_rep	CDS	24157880	24158302	.	+	0	Parent=Os08t0488700-00
Chr08	irgsp1_rep	mRNA	24158664	24159931	.	-	.	ID=Os08t0488800-00;Name=Os08t0488800-00;Locus_id=Os08g0488800;Note=Hypothetical conserved gene.;Transcript_evidence=CT835987 (DDBJ%2C Best hit);ORF_evidence=A3BUB3 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os08t0488800-00;KEGG=Os08t0488800-00
Chr08	irgsp1_rep	five_prime_UTR	24159853	24159931	.	-	.	Parent=Os08t0488800-00
Chr08	irgsp1_rep	CDS	24159406	24159852	.	-	0	Parent=Os08t0488800-00
Chr08	irgsp1_rep	three_prime_UTR	24158664	24159405	.	-	.	Parent=Os08t0488800-00
Chr08	irgsp1_rep	mRNA	24167787	24169178	.	-	.	ID=Os08t0489100-00;Name=Os08t0489100-00;Locus_id=Os08g0489100;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6ZBR2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os08t0489100-00;KEGG=Os08t0489100-00
Chr08	irgsp1_rep	CDS	24167787	24169178	.	-	0	Parent=Os08t0489100-00
Chr08	irgsp1_rep	mRNA	24186670	24188895	.	+	.	ID=Os08t0489300-01;Name=Os08t0489300-01;Locus_id=Os08g0489300;Oryzabase Gene Symbol Synonym(s)=TagI;Note=Methyladenine glycosylase domain containing protein.;Transcript_evidence=AK104597 (DDBJ%2C Best hit),AK059000 (DDBJ%2C Best hit);ORF_evidence=B4FL85 (UniProt);GO=Biological Process: DNA repair (GO:0006281),Biological Process: base-excision repair (GO:0006284),Molecular Function: catalytic activity (GO:0003824),Molecular Function: DNA-3-methyladenine glycosylase I activity (GO:0008725);InterPro=Methyladenine glycosylase (IPR005019),DNA glycosylase (IPR011257);NIAS_FLcDNA=006-308-E03,001-020-G09;Oryzabase=21275;TENOR=Os08t0489300-01
Chr08	irgsp1_rep	five_prime_UTR	24186670	24186733	.	+	.	Parent=Os08t0489300-01
Chr08	irgsp1_rep	CDS	24186734	24187178	.	+	0	Parent=Os08t0489300-01
Chr08	irgsp1_rep	CDS	24187819	24187876	.	+	2	Parent=Os08t0489300-01
Chr08	irgsp1_rep	CDS	24187963	24188046	.	+	1	Parent=Os08t0489300-01
Chr08	irgsp1_rep	CDS	24188150	24188289	.	+	1	Parent=Os08t0489300-01
Chr08	irgsp1_rep	CDS	24188599	24188891	.	+	2	Parent=Os08t0489300-01
Chr08	irgsp1_rep	three_prime_UTR	24188892	24188895	.	+	.	Parent=Os08t0489300-01
Chr08	irgsp1_rep	mRNA	24186671	24188893	.	+	.	ID=Os08t0489300-02;Name=Os08t0489300-02;Locus_id=Os08g0489300;Oryzabase Gene Symbol Synonym(s)=TagI;Note=Similar to GMP synthase.;Transcript_evidence=AK099028 (DDBJ%2C Best hit);ORF_evidence=B4FL85 (UniProt);NIAS_FLcDNA=J013123P04;Oryzabase=21275;TENOR=Os08t0489300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	24186671	24186733	.	+	.	Parent=Os08t0489300-02
Chr08	irgsp1_rep	CDS	24186734	24187321	.	+	0	Parent=Os08t0489300-02
Chr08	irgsp1_rep	three_prime_UTR	24187322	24188046	.	+	.	Parent=Os08t0489300-02
Chr08	irgsp1_rep	three_prime_UTR	24188150	24188893	.	+	.	Parent=Os08t0489300-02
Chr08	irgsp1_rep	mRNA	24186673	24189314	.	+	.	ID=Os08t0489300-03;Name=Os08t0489300-03;Locus_id=Os08g0489300;Oryzabase Gene Symbol Synonym(s)=TagI;Note=Similar to GMP synthase.;Transcript_evidence=AK065590 (DDBJ%2C Best hit);ORF_evidence=B4FL85 (UniProt);NIAS_FLcDNA=J013026F15;Oryzabase=21275;TENOR=Os08t0489300-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	24186673	24186733	.	+	.	Parent=Os08t0489300-03
Chr08	irgsp1_rep	CDS	24186734	24187321	.	+	0	Parent=Os08t0489300-03
Chr08	irgsp1_rep	three_prime_UTR	24187322	24187876	.	+	.	Parent=Os08t0489300-03
Chr08	irgsp1_rep	three_prime_UTR	24187963	24188046	.	+	.	Parent=Os08t0489300-03
Chr08	irgsp1_rep	three_prime_UTR	24188150	24189314	.	+	.	Parent=Os08t0489300-03
Chr08	irgsp1_rep	mRNA	24204442	24210500	.	-	.	ID=Os08t0489800-01;Name=Os08t0489800-01;Locus_id=Os08g0489800;Note=Phosphatidylinositol 3- and 4-kinase%2C catalytic domain containing protein.;Transcript_evidence=AK072785 (DDBJ%2C Best hit);ORF_evidence=NP_001151804.1 (RefSeq);GO=Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Phosphatidylinositol 3-/4-kinase%2C catalytic (IPR000403);NIAS_FLcDNA=J023143J12;Expression=AK072785;TENOR=Os08t0489800-01;KEGG=Os08t0489800-01
Chr08	irgsp1_rep	five_prime_UTR	24210178	24210500	.	-	.	Parent=Os08t0489800-01
Chr08	irgsp1_rep	five_prime_UTR	24206658	24206747	.	-	.	Parent=Os08t0489800-01
Chr08	irgsp1_rep	CDS	24204756	24206657	.	-	0	Parent=Os08t0489800-01
Chr08	irgsp1_rep	three_prime_UTR	24204442	24204755	.	-	.	Parent=Os08t0489800-01
Chr08	irgsp1_rep	mRNA	24222412	24228652	.	+	.	ID=Os08t0490000-01;Name=Os08t0490000-01;Locus_id=Os08g0490000;Oryzabase Gene Symbol Synonym(s)=OsbHLH031;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 031;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=AK100183 (DDBJ%2C Best hit);ORF_evidence=B6SVP6 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J023030J22;Oryzabase=15322;Expression=AK100183;TENOR=Os08t0490000-01;KEGG=Os08t0490000-01
Chr08	irgsp1_rep	five_prime_UTR	24222412	24222564	.	+	.	Parent=Os08t0490000-01
Chr08	irgsp1_rep	CDS	24222565	24222577	.	+	0	Parent=Os08t0490000-01
Chr08	irgsp1_rep	CDS	24222692	24222814	.	+	2	Parent=Os08t0490000-01
Chr08	irgsp1_rep	CDS	24223483	24223731	.	+	2	Parent=Os08t0490000-01
Chr08	irgsp1_rep	CDS	24225759	24225962	.	+	2	Parent=Os08t0490000-01
Chr08	irgsp1_rep	CDS	24226106	24226235	.	+	2	Parent=Os08t0490000-01
Chr08	irgsp1_rep	CDS	24226852	24226921	.	+	1	Parent=Os08t0490000-01
Chr08	irgsp1_rep	CDS	24227008	24227142	.	+	0	Parent=Os08t0490000-01
Chr08	irgsp1_rep	CDS	24227238	24227451	.	+	0	Parent=Os08t0490000-01
Chr08	irgsp1_rep	CDS	24227556	24227697	.	+	2	Parent=Os08t0490000-01
Chr08	irgsp1_rep	CDS	24227872	24228004	.	+	1	Parent=Os08t0490000-01
Chr08	irgsp1_rep	CDS	24228239	24228352	.	+	0	Parent=Os08t0490000-01
Chr08	irgsp1_rep	three_prime_UTR	24228353	24228652	.	+	.	Parent=Os08t0490000-01
Chr08	irgsp1_rep	mRNA	24223483	24228665	.	+	.	ID=Os08t0490000-02;Name=Os08t0490000-02;Locus_id=Os08g0490000;Oryzabase Gene Symbol Synonym(s)=OsbHLH031;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 031;Note=Similar to Transcription factor BIM2.;Transcript_evidence=AK070237 (DDBJ%2C Best hit);ORF_evidence=B6SVP6 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J023047A01;Oryzabase=15322;Expression=AK070237;TENOR=Os08t0490000-02;KEGG=Os08t0490000-02
Chr08	irgsp1_rep	five_prime_UTR	24223483	24223484	.	+	.	Parent=Os08t0490000-02
Chr08	irgsp1_rep	CDS	24223485	24223731	.	+	0	Parent=Os08t0490000-02
Chr08	irgsp1_rep	CDS	24225759	24225962	.	+	2	Parent=Os08t0490000-02
Chr08	irgsp1_rep	CDS	24226106	24226235	.	+	2	Parent=Os08t0490000-02
Chr08	irgsp1_rep	CDS	24226852	24226921	.	+	1	Parent=Os08t0490000-02
Chr08	irgsp1_rep	CDS	24227008	24227142	.	+	0	Parent=Os08t0490000-02
Chr08	irgsp1_rep	CDS	24227238	24227451	.	+	0	Parent=Os08t0490000-02
Chr08	irgsp1_rep	CDS	24227556	24227697	.	+	2	Parent=Os08t0490000-02
Chr08	irgsp1_rep	CDS	24227872	24228004	.	+	1	Parent=Os08t0490000-02
Chr08	irgsp1_rep	CDS	24228239	24228352	.	+	0	Parent=Os08t0490000-02
Chr08	irgsp1_rep	three_prime_UTR	24228353	24228665	.	+	.	Parent=Os08t0490000-02
Chr08	irgsp1_rep	mRNA	24232676	24233936	.	+	.	ID=Os08t0490100-01;Name=Os08t0490100-01;Locus_id=Os08g0490100;RAP-DB Gene Symbol Synonym(s)=OsDOF24;RAP-DB Gene Name Synonym(s)=DNA-BINDING ONE ZINC FINGER 24;CGSNL Gene Symbol=DOF24;CGSNL Gene Name=DNA BINDING WITH ONE FINGER 24;Oryzabase Gene Symbol Synonym(s)=OsDof24%2C Dof24%2C OsDof-24;Oryzabase Gene Name Synonym(s)=Dof zinc factor 24%2C Dof transcription factor 24;Note=Transcription factor with DOF (DNA-binding one zinc finger) domain%2C Repressor of leaf senescence%2C Negative regulation of JA biosynthesis pathway;Transcript_evidence=AK241364;ORF_evidence=Q6ZBQ1;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Zinc finger%2C Dof-type (IPR003851);NIAS_FLcDNA=J065152E11;Manual Curation=May 30%2C 2019;Literature_PMID=31135055;Oryzabase=8813;TENOR=Os08t0490100-01;KEGG=Os08t0490100-01
Chr08	irgsp1_rep	five_prime_UTR	24232676	24232833	.	+	.	Parent=Os08t0490100-01
Chr08	irgsp1_rep	CDS	24232834	24233664	.	+	0	Parent=Os08t0490100-01
Chr08	irgsp1_rep	three_prime_UTR	24233665	24233936	.	+	.	Parent=Os08t0490100-01
Chr08	irgsp1_rep	mRNA	24238314	24242112	.	-	.	ID=Os08t0490300-01;Name=Os08t0490300-01;Locus_id=Os08g0490300;Note=RNA recognition motif%2C glycine rich protein domain containing protein.;Transcript_evidence=AK066895 (DDBJ%2C Best hit);ORF_evidence=A2YWH8 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013090I22;Expression=AK066895;TENOR=Os08t0490300-01;KEGG=Os08t0490300-01
Chr08	irgsp1_rep	five_prime_UTR	24242022	24242112	.	-	.	Parent=Os08t0490300-01
Chr08	irgsp1_rep	CDS	24240210	24242021	.	-	0	Parent=Os08t0490300-01
Chr08	irgsp1_rep	three_prime_UTR	24240048	24240209	.	-	.	Parent=Os08t0490300-01
Chr08	irgsp1_rep	three_prime_UTR	24238314	24238506	.	-	.	Parent=Os08t0490300-01
Chr08	irgsp1_rep	mRNA	24245038	24245636	.	+	.	ID=Os08t0490400-00;Name=Os08t0490400-00;Locus_id=Os08g0490400;CGSNL Gene Symbol=AGP10;CGSNL Gene Name=ARABINOGALACTAN PROTEIN 10;Oryzabase Gene Symbol Synonym(s)=OsAGP10;Oryzabase Gene Name Synonym(s)=Arabinogalactan protein 10;Note=Hypothetical gene.;Transcript_evidence=AK334302 (DDBJ);ORF_evidence=GeneMark;Oryzabase=11303;TENOR=Os08t0490400-00;KEGG=Os08t0490400-00
Chr08	irgsp1_rep	five_prime_UTR	24245038	24245039	.	+	.	Parent=Os08t0490400-00
Chr08	irgsp1_rep	CDS	24245040	24245636	.	+	0	Parent=Os08t0490400-00
Chr08	irgsp1_rep	mRNA	24253045	24253832	.	+	.	ID=Os08t0490600-01;Name=Os08t0490600-01;Locus_id=Os08g0490600;CGSNL Gene Symbol=FLA4;CGSNL Gene Name=FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OsFLA4;Oryzabase Gene Name Synonym(s)=fasciclin-like AGP 4%2C fasciclin-like arabinogalactan protein 4;Note=FAS1 domain domain containing protein.;Transcript_evidence=AK108305 (DDBJ%2C Best hit);ORF_evidence=Q06IA2 (UniProt);InterPro=FAS1 domain (IPR000782);NIAS_FLcDNA=002-141-F05;Oryzabase=11339;Expression=AK108305;TENOR=Os08t0490600-01;KEGG=Os08t0490600-01
Chr08	irgsp1_rep	five_prime_UTR	24253045	24253046	.	+	.	Parent=Os08t0490600-01
Chr08	irgsp1_rep	CDS	24253047	24253592	.	+	0	Parent=Os08t0490600-01
Chr08	irgsp1_rep	three_prime_UTR	24253593	24253832	.	+	.	Parent=Os08t0490600-01
Chr08	irgsp1_rep	mRNA	24254958	24256532	.	+	.	ID=Os08t0490700-01;Name=Os08t0490700-01;Locus_id=Os08g0490700;Note=Conserved hypothetical protein.;Transcript_evidence=AK069034 (DDBJ%2C Best hit),AK070422 (DDBJ%2C Best hit);ORF_evidence=A2YWI2 (UniProt);NIAS_FLcDNA=J023004E14,J023050E02;Expression=AK069034;TENOR=Os08t0490700-01;KEGG=Os08t0490700-01
Chr08	irgsp1_rep	five_prime_UTR	24254958	24255022	.	+	.	Parent=Os08t0490700-01
Chr08	irgsp1_rep	CDS	24255023	24256285	.	+	0	Parent=Os08t0490700-01
Chr08	irgsp1_rep	three_prime_UTR	24256286	24256532	.	+	.	Parent=Os08t0490700-01
Chr08	irgsp1_rep	mRNA	24258186	24258495	.	+	.	ID=Os08t0490800-00;Name=Os08t0490800-00;Locus_id=Os08g0490800;Note=Similar to Histone H2B.;Transcript_evidence=FP097117 (DDBJ);ORF_evidence=B9G1J0 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H2B (IPR000558),Histone core (IPR007125),Histone-fold (IPR009072);TENOR=Os08t0490800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	24258186	24258194	.	+	.	Parent=Os08t0490800-00
Chr08	irgsp1_rep	CDS	24258195	24258365	.	+	0	Parent=Os08t0490800-00
Chr08	irgsp1_rep	three_prime_UTR	24258366	24258495	.	+	.	Parent=Os08t0490800-00
Chr08	irgsp1_rep	mRNA	24261228	24262081	.	+	.	ID=Os08t0490900-00;Name=Os08t0490900-00;Locus_id=Os08g0490900;Note=Similar to Histone H2B.2.;Transcript_evidence=FP098904 (DDBJ);ORF_evidence=C5XPC6 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H2B (IPR000558),Histone core (IPR007125),Histone-fold (IPR009072);TENOR=Os08t0490900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	24261228	24261866	.	+	0	Parent=Os08t0490900-00
Chr08	irgsp1_rep	three_prime_UTR	24261867	24262081	.	+	.	Parent=Os08t0490900-00
Chr08	irgsp1_rep	mRNA	24263164	24265097	.	+	.	ID=Os08t0491000-01;Name=Os08t0491000-01;Locus_id=Os08g0491000;Note=Hypothetical conserved gene.;Transcript_evidence=AK073673 (DDBJ%2C Best hit);ORF_evidence=B9G1J1 (UniProt);NIAS_FLcDNA=J033047P09;TENOR=Os08t0491000-01
Chr08	irgsp1_rep	five_prime_UTR	24263164	24263266	.	+	.	Parent=Os08t0491000-01
Chr08	irgsp1_rep	CDS	24263267	24263432	.	+	0	Parent=Os08t0491000-01
Chr08	irgsp1_rep	CDS	24264048	24265097	.	+	2	Parent=Os08t0491000-01
Chr08	irgsp1_rep	mRNA	24267785	24270358	.	+	.	ID=Os08t0491100-01;Name=Os08t0491100-01;Locus_id=Os08g0491100;Note=Conserved hypothetical protein.;Transcript_evidence=AK060215 (DDBJ%2C Best hit);ORF_evidence=B8BC14 (UniProt);NIAS_FLcDNA=001-002-C08;TENOR=Os08t0491100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	24267785	24267805	.	+	0	Parent=Os08t0491100-01
Chr08	irgsp1_rep	CDS	24267889	24268077	.	+	0	Parent=Os08t0491100-01
Chr08	irgsp1_rep	CDS	24268642	24268748	.	+	0	Parent=Os08t0491100-01
Chr08	irgsp1_rep	CDS	24269859	24269950	.	+	1	Parent=Os08t0491100-01
Chr08	irgsp1_rep	CDS	24270042	24270079	.	+	2	Parent=Os08t0491100-01
Chr08	irgsp1_rep	three_prime_UTR	24270080	24270358	.	+	.	Parent=Os08t0491100-01
Chr08	irgsp1_rep	mRNA	24274040	24277403	.	+	.	ID=Os08t0491200-01;Name=Os08t0491200-01;Locus_id=Os08g0491200;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK103656 (DDBJ%2C Best hit);ORF_evidence=B7EQ74 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033135F07;Expression=AK103656;TENOR=Os08t0491200-01;KEGG=Os08t0491200-01
Chr08	irgsp1_rep	five_prime_UTR	24274040	24274304	.	+	.	Parent=Os08t0491200-01
Chr08	irgsp1_rep	five_prime_UTR	24274852	24274978	.	+	.	Parent=Os08t0491200-01
Chr08	irgsp1_rep	CDS	24274979	24275883	.	+	0	Parent=Os08t0491200-01
Chr08	irgsp1_rep	CDS	24276247	24277126	.	+	1	Parent=Os08t0491200-01
Chr08	irgsp1_rep	three_prime_UTR	24277127	24277403	.	+	.	Parent=Os08t0491200-01
Chr08	irgsp1_rep	mRNA	24282860	24284377	.	+	.	ID=Os08t0491400-01;Name=Os08t0491400-01;Locus_id=Os08g0491400;Note=Interferon-related developmental regulator domain containing protein.;Transcript_evidence=AK109684 (DDBJ%2C Best hit);ORF_evidence=A2YWI6 (UniProt);InterPro=Interferon-related developmental regulator%2C N-terminal (IPR007701);NIAS_FLcDNA=002-145-D08;Expression=AK109684;TENOR=Os08t0491400-01;KEGG=Os08t0491400-01
Chr08	irgsp1_rep	five_prime_UTR	24282860	24282960	.	+	.	Parent=Os08t0491400-01
Chr08	irgsp1_rep	CDS	24282961	24284271	.	+	0	Parent=Os08t0491400-01
Chr08	irgsp1_rep	three_prime_UTR	24284272	24284377	.	+	.	Parent=Os08t0491400-01
Chr08	irgsp1_rep	mRNA	24292185	24294714	.	+	.	ID=Os08t0491700-00;Name=Os08t0491700-00;Locus_id=Os08g0491700;CGSNL Gene Symbol=C3H57;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 57;Oryzabase Gene Symbol Synonym(s)=OsC3H57;Oryzabase Gene Name Synonym(s)=Putative zinc finger CCCH domain-containing protein 57;Note=Putative zinc finger CCCH domain-containing protein 57.;Transcript_evidence=A3BUD2 (UniProt);ORF_evidence=A3BUD2 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);Oryzabase=8623;TENOR=Os08t0491700-00
Chr08	irgsp1_rep	CDS	24292185	24292649	.	+	0	Parent=Os08t0491700-00
Chr08	irgsp1_rep	CDS	24292718	24293692	.	+	0	Parent=Os08t0491700-00
Chr08	irgsp1_rep	CDS	24293808	24293897	.	+	0	Parent=Os08t0491700-00
Chr08	irgsp1_rep	CDS	24294002	24294263	.	+	0	Parent=Os08t0491700-00
Chr08	irgsp1_rep	CDS	24294689	24294714	.	+	2	Parent=Os08t0491700-00
Chr08	irgsp1_rep	mRNA	24311145	24314816	.	+	.	ID=Os08t0492000-01;Name=Os08t0492000-01;Locus_id=Os08g0492000;Oryzabase Gene Symbol Synonym(s)=OsOPT9;Oryzabase Gene Name Synonym(s)=Oligopeptide transporter 9;Note=Similar to Glutathione transporter.;Transcript_evidence=AK100814 (DDBJ%2C Best hit);ORF_evidence=XP_002323113.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085);InterPro=Tetrapeptide transporter%2C OPT1/isp4 (IPR004648),Oligopeptide transporter OPT superfamily (IPR004813);NIAS_FLcDNA=J023122C04;Oryzabase=12499;Expression=AK100814;TENOR=Os08t0492000-01;KEGG=Os08t0492000-01
Chr08	irgsp1_rep	five_prime_UTR	24311145	24311161	.	+	.	Parent=Os08t0492000-01
Chr08	irgsp1_rep	CDS	24311162	24311243	.	+	0	Parent=Os08t0492000-01
Chr08	irgsp1_rep	CDS	24311376	24311818	.	+	2	Parent=Os08t0492000-01
Chr08	irgsp1_rep	CDS	24311987	24312084	.	+	0	Parent=Os08t0492000-01
Chr08	irgsp1_rep	CDS	24312224	24313055	.	+	1	Parent=Os08t0492000-01
Chr08	irgsp1_rep	CDS	24313705	24313887	.	+	0	Parent=Os08t0492000-01
Chr08	irgsp1_rep	CDS	24313968	24314588	.	+	0	Parent=Os08t0492000-01
Chr08	irgsp1_rep	three_prime_UTR	24314589	24314816	.	+	.	Parent=Os08t0492000-01
Chr08	irgsp1_rep	mRNA	24315385	24318746	.	-	.	ID=Os08t0492100-01;Name=Os08t0492100-01;Locus_id=Os08g0492100;RAP-DB Gene Symbol Synonym(s)=OsRBGD3;Note=Class D glycine-rich RNA recognition motif (RRM) containing protein%2C RNA-binding glycine-rich (RBG) protein%2C Cold stress tolerance%2C Regulation of ABA signalling pathway;Transcript_evidence=AK071053;ORF_evidence=Q6Z8U4;GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723),Cellular Component: ribonucleoprotein complex (GO:1990904);InterPro=Nucleotide-binding alpha-beta plait domain superfamily (IPR012677),RNA-binding domain superfamily (IPR035979),Paraneoplastic encephalomyelitis antigen (IPR002343),RNA recognition motif domain (IPR000504);NIAS_FLcDNA=J023078J08;Manual Curation=May 12%2C 2020;Literature_PMID=30940336;Expression=AK071053;TENOR=Os08t0492100-01;KEGG=Os08t0492100-01;Subcellular location=cytoplasm (GO:0005737), nucleus (GO:0005634)
Chr08	irgsp1_rep	five_prime_UTR	24318688	24318746	.	-	.	Parent=Os08t0492100-01
Chr08	irgsp1_rep	CDS	24318620	24318687	.	-	0	Parent=Os08t0492100-01
Chr08	irgsp1_rep	CDS	24318464	24318504	.	-	1	Parent=Os08t0492100-01
Chr08	irgsp1_rep	CDS	24317579	24317742	.	-	2	Parent=Os08t0492100-01
Chr08	irgsp1_rep	CDS	24316685	24316784	.	-	0	Parent=Os08t0492100-01
Chr08	irgsp1_rep	CDS	24316437	24316606	.	-	2	Parent=Os08t0492100-01
Chr08	irgsp1_rep	CDS	24315675	24316220	.	-	0	Parent=Os08t0492100-01
Chr08	irgsp1_rep	three_prime_UTR	24315385	24315674	.	-	.	Parent=Os08t0492100-01
Chr08	irgsp1_rep	mRNA	24313345	24318744	.	-	.	ID=Os08t0492100-02;Name=Os08t0492100-02;Locus_id=Os08g0492100;CGSNL Gene Symbol=RBGD3;CGSNL Gene Name=RNA-BINDING GLYCINE-RICH PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsRBGD3;Oryzabase Gene Name Synonym(s)=RNA-binding glycine-rich protein 3;Note=Hypothetical conserved gene.;Transcript_evidence=AK100101 (DDBJ%2C Best hit);ORF_evidence=longestORF;GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023004I20;Oryzabase=23595;Expression=AK100101;TENOR=Os08t0492100-02;KEGG=Os08t0492100-02
Chr08	irgsp1_rep	five_prime_UTR	24318688	24318744	.	-	.	Parent=Os08t0492100-02
Chr08	irgsp1_rep	CDS	24318620	24318687	.	-	0	Parent=Os08t0492100-02
Chr08	irgsp1_rep	CDS	24318464	24318504	.	-	1	Parent=Os08t0492100-02
Chr08	irgsp1_rep	CDS	24317579	24317742	.	-	2	Parent=Os08t0492100-02
Chr08	irgsp1_rep	CDS	24316685	24316784	.	-	0	Parent=Os08t0492100-02
Chr08	irgsp1_rep	CDS	24316437	24316606	.	-	2	Parent=Os08t0492100-02
Chr08	irgsp1_rep	CDS	24313848	24314615	.	-	0	Parent=Os08t0492100-02
Chr08	irgsp1_rep	three_prime_UTR	24313345	24313847	.	-	.	Parent=Os08t0492100-02
Chr08	irgsp1_rep	mRNA	24315383	24318705	.	-	.	ID=Os08t0492100-03;Name=Os08t0492100-03;Locus_id=Os08g0492100;CGSNL Gene Symbol=RBGD3;CGSNL Gene Name=RNA-BINDING GLYCINE-RICH PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsRBGD3;Oryzabase Gene Name Synonym(s)=RNA-binding glycine-rich protein 3;Note=Paraneoplastic encephalomyelitis antigen family protein.;Transcript_evidence=AK060178 (DDBJ%2C Best hit);ORF_evidence=B4FMA8 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723);InterPro=RNA recognition motif domain (IPR000504),Paraneoplastic encephalomyelitis antigen (IPR002343),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-001-A05;Oryzabase=23595;TENOR=Os08t0492100-03
Chr08	irgsp1_rep	five_prime_UTR	24318688	24318705	.	-	.	Parent=Os08t0492100-03
Chr08	irgsp1_rep	CDS	24318620	24318687	.	-	0	Parent=Os08t0492100-03
Chr08	irgsp1_rep	CDS	24318464	24318504	.	-	1	Parent=Os08t0492100-03
Chr08	irgsp1_rep	CDS	24317579	24317742	.	-	2	Parent=Os08t0492100-03
Chr08	irgsp1_rep	CDS	24316685	24316784	.	-	0	Parent=Os08t0492100-03
Chr08	irgsp1_rep	CDS	24316437	24316606	.	-	2	Parent=Os08t0492100-03
Chr08	irgsp1_rep	CDS	24315675	24316220	.	-	0	Parent=Os08t0492100-03
Chr08	irgsp1_rep	three_prime_UTR	24315383	24315674	.	-	.	Parent=Os08t0492100-03
Chr08	irgsp1_rep	mRNA	24315674	24317732	.	+	.	ID=Os08t0492150-00;Name=Os08t0492150-00;Locus_id=Os08g0492150;Note=Non-protein coding transcript.;Transcript_evidence=BT017230 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0492150-00
Chr08	irgsp1_rep	exon	24315674	24316240	.	+	.	Parent=Os08t0492150-00
Chr08	irgsp1_rep	exon	24316452	24316622	.	+	.	Parent=Os08t0492150-00
Chr08	irgsp1_rep	exon	24316695	24316785	.	+	.	Parent=Os08t0492150-00
Chr08	irgsp1_rep	exon	24317580	24317732	.	+	.	Parent=Os08t0492150-00
Chr08	irgsp1_rep	mRNA	24326030	24332293	.	+	.	ID=Os08t0492400-01;Name=Os08t0492400-01;Locus_id=Os08g0492400;Note=C2 calcium-dependent membrane targeting domain containing protein.;Transcript_evidence=AK241274 (DDBJ%2C Best hit);ORF_evidence=B9G1J5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),GRAM (IPR004182),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=J065134F04;TENOR=Os08t0492400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	24326030	24326224	.	+	.	Parent=Os08t0492400-01
Chr08	irgsp1_rep	CDS	24326225	24326225	.	+	0	Parent=Os08t0492400-01
Chr08	irgsp1_rep	CDS	24327362	24328738	.	+	2	Parent=Os08t0492400-01
Chr08	irgsp1_rep	CDS	24329061	24329243	.	+	2	Parent=Os08t0492400-01
Chr08	irgsp1_rep	CDS	24329389	24329672	.	+	2	Parent=Os08t0492400-01
Chr08	irgsp1_rep	CDS	24329757	24329873	.	+	0	Parent=Os08t0492400-01
Chr08	irgsp1_rep	CDS	24330299	24330555	.	+	0	Parent=Os08t0492400-01
Chr08	irgsp1_rep	CDS	24330746	24330926	.	+	1	Parent=Os08t0492400-01
Chr08	irgsp1_rep	CDS	24331044	24331316	.	+	0	Parent=Os08t0492400-01
Chr08	irgsp1_rep	CDS	24331777	24331971	.	+	0	Parent=Os08t0492400-01
Chr08	irgsp1_rep	three_prime_UTR	24331972	24332293	.	+	.	Parent=Os08t0492400-01
Chr08	irgsp1_rep	mRNA	24336038	24337028	.	-	.	ID=Os08t0492500-01;Name=Os08t0492500-01;Locus_id=Os08g0492500;RAP-DB Gene Symbol Synonym(s)=OsRHP1;RAP-DB Gene Name Synonym(s)=RING-H2 finger protein 1;Oryzabase Gene Symbol Synonym(s)=OsRHP1;Oryzabase Gene Name Synonym(s)=RING-H2 finger protein 1;Note=RING-H2 finger protein%2C Drought and salt stress tolerance;Transcript_evidence=AK065316;ORF_evidence=Q6Z8T9;GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-CH-type (IPR011016),Zinc finger%2C RING-type (IPR001841);NIAS_FLcDNA=J013002P08;Manual Curation=June 10%2C 2019;Literature_PMID=DOI:10.1007/s12374-013-0481-z;Oryzabase=19120;Expression=AK065316;TENOR=Os08t0492500-01;KEGG=Os08t0492500-01
Chr08	irgsp1_rep	five_prime_UTR	24336866	24337028	.	-	.	Parent=Os08t0492500-01
Chr08	irgsp1_rep	CDS	24336362	24336865	.	-	0	Parent=Os08t0492500-01
Chr08	irgsp1_rep	three_prime_UTR	24336038	24336361	.	-	.	Parent=Os08t0492500-01
Chr08	irgsp1_rep	mRNA	24336377	24337072	.	+	.	ID=Os08t0492600-00;Name=Os08t0492600-00;Locus_id=Os08g0492600;Note=Hypothetical conserved gene.;Transcript_evidence=BT019287 (DDBJ);ORF_evidence=NP_001151741.1 (RefSeq);TENOR=Os08t0492600-00;KEGG=Os08t0492600-00
Chr08	irgsp1_rep	CDS	24336377	24337072	.	+	0	Parent=Os08t0492600-00
Chr08	irgsp1_rep	mRNA	24351727	24355840	.	+	.	ID=Os08t0493100-01;Name=Os08t0493100-01;Locus_id=Os08g0493100;Oryzabase Gene Symbol Synonym(s)=OsFbox460%2C Os_F0200;Oryzabase Gene Name Synonym(s)=F-box protein 460;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK121365 (DDBJ%2C Best hit);ORF_evidence=A2YWJ6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023125F02;Oryzabase=17230;Expression=AK121365;TENOR=Os08t0493100-01;KEGG=Os08t0493100-01
Chr08	irgsp1_rep	five_prime_UTR	24351727	24351897	.	+	.	Parent=Os08t0493100-01
Chr08	irgsp1_rep	CDS	24351898	24352755	.	+	0	Parent=Os08t0493100-01
Chr08	irgsp1_rep	CDS	24354016	24354391	.	+	0	Parent=Os08t0493100-01
Chr08	irgsp1_rep	CDS	24355331	24355446	.	+	2	Parent=Os08t0493100-01
Chr08	irgsp1_rep	three_prime_UTR	24355447	24355840	.	+	.	Parent=Os08t0493100-01
Chr08	irgsp1_rep	mRNA	24351873	24355681	.	+	.	ID=Os08t0493100-02;Name=Os08t0493100-02;Locus_id=Os08g0493100;Oryzabase Gene Symbol Synonym(s)=OsFbox460%2C Os_F0200;Oryzabase Gene Name Synonym(s)=F-box protein 460;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK108678 (DDBJ%2C Best hit);ORF_evidence=A2YWJ6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-149-A09;Oryzabase=17230;Expression=AK108678;TENOR=Os08t0493100-02;KEGG=Os08t0493100-02
Chr08	irgsp1_rep	five_prime_UTR	24351873	24351897	.	+	.	Parent=Os08t0493100-02
Chr08	irgsp1_rep	CDS	24351898	24352755	.	+	0	Parent=Os08t0493100-02
Chr08	irgsp1_rep	CDS	24354016	24354391	.	+	0	Parent=Os08t0493100-02
Chr08	irgsp1_rep	CDS	24355331	24355446	.	+	2	Parent=Os08t0493100-02
Chr08	irgsp1_rep	three_prime_UTR	24355447	24355681	.	+	.	Parent=Os08t0493100-02
Chr08	irgsp1_rep	mRNA	24367369	24369671	.	-	.	ID=Os08t0493500-00;Name=Os08t0493500-00;Locus_id=Os08g0493500;Note=Hypothetical conserved gene.;Transcript_evidence=AF442490 (DDBJ%2C Secondary hit);ORF_evidence=B9GAQ4 (UniProt);Expression=AF442490;TENOR=Os08t0493500-00;KEGG=Os08t0493500-00
Chr08	irgsp1_rep	five_prime_UTR	24369545	24369671	.	-	.	Parent=Os08t0493500-00
Chr08	irgsp1_rep	five_prime_UTR	24368973	24368983	.	-	.	Parent=Os08t0493500-00
Chr08	irgsp1_rep	CDS	24368932	24368972	.	-	0	Parent=Os08t0493500-00
Chr08	irgsp1_rep	CDS	24368606	24368798	.	-	1	Parent=Os08t0493500-00
Chr08	irgsp1_rep	CDS	24368276	24368533	.	-	0	Parent=Os08t0493500-00
Chr08	irgsp1_rep	three_prime_UTR	24368159	24368275	.	-	.	Parent=Os08t0493500-00
Chr08	irgsp1_rep	three_prime_UTR	24367967	24368077	.	-	.	Parent=Os08t0493500-00
Chr08	irgsp1_rep	three_prime_UTR	24367369	24367656	.	-	.	Parent=Os08t0493500-00
Chr08	irgsp1_rep	mRNA	24379092	24382007	.	+	.	ID=Os08t0493800-01;Name=Os08t0493800-01;Locus_id=Os08g0493800;CGSNL Gene Symbol=RLCK256;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 256;Oryzabase Gene Symbol Synonym(s)=OsRLCK256;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 256;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK110374 (DDBJ%2C Best hit);ORF_evidence=Q6Z8S8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-165-C03;Oryzabase=18946;Expression=AK110374;TENOR=Os08t0493800-01;KEGG=Os08t0493800-01
Chr08	irgsp1_rep	five_prime_UTR	24379092	24379175	.	+	.	Parent=Os08t0493800-01
Chr08	irgsp1_rep	CDS	24379176	24382007	.	+	0	Parent=Os08t0493800-01
Chr08	irgsp1_rep	mRNA	24384370	24389114	.	+	.	ID=Os08t0493900-01;Name=Os08t0493900-01;Locus_id=Os08g0493900;Oryzabase Gene Symbol Synonym(s)=OsWD40-161;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK111820 (DDBJ%2C Best hit);ORF_evidence=XP_002894196.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J023011O16;Oryzabase=10842;Expression=AK111820;TENOR=Os08t0493900-01;KEGG=Os08t0493900-01
Chr08	irgsp1_rep	five_prime_UTR	24384370	24384509	.	+	.	Parent=Os08t0493900-01
Chr08	irgsp1_rep	CDS	24384510	24384686	.	+	0	Parent=Os08t0493900-01
Chr08	irgsp1_rep	CDS	24384785	24384872	.	+	0	Parent=Os08t0493900-01
Chr08	irgsp1_rep	CDS	24385314	24385399	.	+	2	Parent=Os08t0493900-01
Chr08	irgsp1_rep	CDS	24385600	24385753	.	+	0	Parent=Os08t0493900-01
Chr08	irgsp1_rep	CDS	24385965	24386125	.	+	2	Parent=Os08t0493900-01
Chr08	irgsp1_rep	CDS	24386206	24386874	.	+	0	Parent=Os08t0493900-01
Chr08	irgsp1_rep	CDS	24386982	24387300	.	+	0	Parent=Os08t0493900-01
Chr08	irgsp1_rep	CDS	24387430	24387647	.	+	2	Parent=Os08t0493900-01
Chr08	irgsp1_rep	CDS	24387820	24387997	.	+	0	Parent=Os08t0493900-01
Chr08	irgsp1_rep	CDS	24388101	24388600	.	+	2	Parent=Os08t0493900-01
Chr08	irgsp1_rep	three_prime_UTR	24388601	24389114	.	+	.	Parent=Os08t0493900-01
Chr08	irgsp1_rep	mRNA	24384480	24388792	.	+	.	ID=Os08t0493900-02;Name=Os08t0493900-02;Locus_id=Os08g0493900;Oryzabase Gene Symbol Synonym(s)=OsWD40-161;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK101284 (DDBJ%2C Best hit);ORF_evidence=XP_002894196.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J033033D24;Oryzabase=10842;Expression=AK101284;TENOR=Os08t0493900-02;KEGG=Os08t0493900-02
Chr08	irgsp1_rep	five_prime_UTR	24384480	24384509	.	+	.	Parent=Os08t0493900-02
Chr08	irgsp1_rep	CDS	24384510	24384686	.	+	0	Parent=Os08t0493900-02
Chr08	irgsp1_rep	CDS	24384785	24384872	.	+	0	Parent=Os08t0493900-02
Chr08	irgsp1_rep	CDS	24385314	24385399	.	+	2	Parent=Os08t0493900-02
Chr08	irgsp1_rep	CDS	24385600	24385753	.	+	0	Parent=Os08t0493900-02
Chr08	irgsp1_rep	CDS	24385965	24386125	.	+	2	Parent=Os08t0493900-02
Chr08	irgsp1_rep	CDS	24386206	24386874	.	+	0	Parent=Os08t0493900-02
Chr08	irgsp1_rep	CDS	24386982	24387300	.	+	0	Parent=Os08t0493900-02
Chr08	irgsp1_rep	CDS	24387430	24387647	.	+	2	Parent=Os08t0493900-02
Chr08	irgsp1_rep	CDS	24387820	24387997	.	+	0	Parent=Os08t0493900-02
Chr08	irgsp1_rep	CDS	24388101	24388600	.	+	2	Parent=Os08t0493900-02
Chr08	irgsp1_rep	three_prime_UTR	24388601	24388792	.	+	.	Parent=Os08t0493900-02
Chr08	irgsp1_rep	mRNA	24389390	24390462	.	-	.	ID=Os08t0494000-01;Name=Os08t0494000-01;Locus_id=Os08g0494000;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK110788 (DDBJ%2C Best hit);ORF_evidence=NP_001148671.1 (RefSeq);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=002-171-C09;Expression=AK110788;TENOR=Os08t0494000-01;KEGG=Os08t0494000-01
Chr08	irgsp1_rep	five_prime_UTR	24390235	24390462	.	-	.	Parent=Os08t0494000-01
Chr08	irgsp1_rep	CDS	24389536	24390234	.	-	0	Parent=Os08t0494000-01
Chr08	irgsp1_rep	three_prime_UTR	24389390	24389535	.	-	.	Parent=Os08t0494000-01
Chr08	irgsp1_rep	mRNA	24391713	24393867	.	-	.	ID=Os08t0494100-01;Name=Os08t0494100-01;Locus_id=Os08g0494100;RAP-DB Gene Symbol Synonym(s)=MADS62%2C OsMADS62;RAP-DB Gene Name Synonym(s)=MADS BOX GENE 62%2C MADS box gene62%2C MADS box gene 62%2C MADS-box transcription factor 62;CGSNL Gene Symbol=MADS62;CGSNL Gene Name=MADS BOX GENE 62;Oryzabase Gene Symbol Synonym(s)=OsMADS62;Oryzabase Gene Name Synonym(s)=MADS box gene62%2C MADS box gene 62%2C MADS-box transcription factor 62;Note=MADS box transcription factor%2C Pollen maturation;Transcript_evidence=Inferred from literature;ORF_evidence=Q6Z5F8;GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box (IPR002100);Manual Curation=April 22%2C 2014;Literature_PMID=23613199,17640358;Oryzabase=12299;TENOR=Os08t0494100-00
Chr08	irgsp1_rep	CDS	24393683	24393867	.	-	0	Parent=Os08t0494100-01
Chr08	irgsp1_rep	CDS	24393511	24393564	.	-	1	Parent=Os08t0494100-01
Chr08	irgsp1_rep	CDS	24393362	24393380	.	-	1	Parent=Os08t0494100-01
Chr08	irgsp1_rep	CDS	24392936	24392997	.	-	0	Parent=Os08t0494100-01
Chr08	irgsp1_rep	CDS	24392718	24392817	.	-	1	Parent=Os08t0494100-01
Chr08	irgsp1_rep	CDS	24392507	24392563	.	-	0	Parent=Os08t0494100-01
Chr08	irgsp1_rep	CDS	24392276	24392418	.	-	0	Parent=Os08t0494100-01
Chr08	irgsp1_rep	CDS	24391982	24392201	.	-	1	Parent=Os08t0494100-01
Chr08	irgsp1_rep	CDS	24391713	24391886	.	-	0	Parent=Os08t0494100-01
Chr08	irgsp1_rep	mRNA	24391703	24393904	.	-	.	ID=Os08t0494100-02;Name=Os08t0494100-02;Locus_id=Os08g0494100;RAP-DB Gene Symbol Synonym(s)=MADS62%2C OsMADS62;RAP-DB Gene Name Synonym(s)=MADS BOX GENE 62%2C MADS box gene62%2C MADS box gene 62%2C MADS-box transcription factor 62;CGSNL Gene Symbol=MADS62;CGSNL Gene Name=MADS BOX GENE 62;Oryzabase Gene Symbol Synonym(s)=OsMADS62;Oryzabase Gene Name Synonym(s)=MADS box gene62%2C MADS box gene 62%2C MADS-box transcription factor 62;Note=MADS domain transcription factor%2C Pollen maturation;Transcript_evidence=FM956504;ORF_evidence=G0KY81;GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box (IPR002100);Manual Curation=May 1%2C 2014;Literature_PMID=21813465;Oryzabase=12299
Chr08	irgsp1_rep	five_prime_UTR	24393868	24393904	.	-	.	Parent=Os08t0494100-02
Chr08	irgsp1_rep	CDS	24393683	24393867	.	-	0	Parent=Os08t0494100-02
Chr08	irgsp1_rep	CDS	24393511	24393564	.	-	1	Parent=Os08t0494100-02
Chr08	irgsp1_rep	CDS	24393362	24393380	.	-	1	Parent=Os08t0494100-02
Chr08	irgsp1_rep	CDS	24393225	24393286	.	-	0	Parent=Os08t0494100-02
Chr08	irgsp1_rep	CDS	24393102	24393123	.	-	1	Parent=Os08t0494100-02
Chr08	irgsp1_rep	CDS	24392936	24392997	.	-	0	Parent=Os08t0494100-02
Chr08	irgsp1_rep	CDS	24392718	24392817	.	-	1	Parent=Os08t0494100-02
Chr08	irgsp1_rep	CDS	24392507	24392563	.	-	0	Parent=Os08t0494100-02
Chr08	irgsp1_rep	CDS	24392276	24392418	.	-	0	Parent=Os08t0494100-02
Chr08	irgsp1_rep	CDS	24392163	24392201	.	-	1	Parent=Os08t0494100-02
Chr08	irgsp1_rep	CDS	24391982	24392078	.	-	1	Parent=Os08t0494100-02
Chr08	irgsp1_rep	CDS	24391713	24391886	.	-	0	Parent=Os08t0494100-02
Chr08	irgsp1_rep	three_prime_UTR	24391703	24391712	.	-	.	Parent=Os08t0494100-02
Chr08	irgsp1_rep	mRNA	24394211	24406486	.	+	.	ID=Os08t0494200-01;Name=Os08t0494200-01;Locus_id=Os08g0494200;Note=Conserved hypothetical protein.;Transcript_evidence=AK100830 (DDBJ%2C Best hit);ORF_evidence=B8BC24 (UniProt);NIAS_FLcDNA=J023123D01;Expression=AK100830;TENOR=Os08t0494200-01;KEGG=Os08t0494200-01
Chr08	irgsp1_rep	five_prime_UTR	24394211	24394252	.	+	.	Parent=Os08t0494200-01
Chr08	irgsp1_rep	five_prime_UTR	24396627	24396720	.	+	.	Parent=Os08t0494200-01
Chr08	irgsp1_rep	five_prime_UTR	24396837	24396906	.	+	.	Parent=Os08t0494200-01
Chr08	irgsp1_rep	CDS	24396907	24397032	.	+	0	Parent=Os08t0494200-01
Chr08	irgsp1_rep	CDS	24406065	24406154	.	+	0	Parent=Os08t0494200-01
Chr08	irgsp1_rep	three_prime_UTR	24406155	24406486	.	+	.	Parent=Os08t0494200-01
Chr08	irgsp1_rep	mRNA	24397939	24401324	.	-	.	ID=Os08t0494300-01;Name=Os08t0494300-01;Locus_id=Os08g0494300;Note=Copine domain containing protein.;Transcript_evidence=AK066150 (DDBJ%2C Best hit);ORF_evidence=NP_001147447.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),von Willebrand factor%2C type A (IPR002035),Copine (IPR010734),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J013058G19;Expression=AK066150;TENOR=Os08t0494300-01;KEGG=Os08t0494300-01
Chr08	irgsp1_rep	five_prime_UTR	24401229	24401324	.	-	.	Parent=Os08t0494300-01
Chr08	irgsp1_rep	five_prime_UTR	24400936	24400981	.	-	.	Parent=Os08t0494300-01
Chr08	irgsp1_rep	CDS	24400798	24400935	.	-	0	Parent=Os08t0494300-01
Chr08	irgsp1_rep	CDS	24399980	24400064	.	-	0	Parent=Os08t0494300-01
Chr08	irgsp1_rep	CDS	24399733	24399873	.	-	2	Parent=Os08t0494300-01
Chr08	irgsp1_rep	CDS	24399538	24399651	.	-	2	Parent=Os08t0494300-01
Chr08	irgsp1_rep	CDS	24399360	24399457	.	-	2	Parent=Os08t0494300-01
Chr08	irgsp1_rep	CDS	24399154	24399233	.	-	0	Parent=Os08t0494300-01
Chr08	irgsp1_rep	CDS	24398939	24399044	.	-	1	Parent=Os08t0494300-01
Chr08	irgsp1_rep	CDS	24398729	24398856	.	-	0	Parent=Os08t0494300-01
Chr08	irgsp1_rep	CDS	24398473	24398635	.	-	1	Parent=Os08t0494300-01
Chr08	irgsp1_rep	CDS	24398286	24398342	.	-	0	Parent=Os08t0494300-01
Chr08	irgsp1_rep	CDS	24398132	24398212	.	-	0	Parent=Os08t0494300-01
Chr08	irgsp1_rep	three_prime_UTR	24397939	24398131	.	-	.	Parent=Os08t0494300-01
Chr08	irgsp1_rep	mRNA	24402687	24403874	.	+	.	ID=Os08t0494350-00;Name=Os08t0494350-00;Locus_id=Os08g0494350;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8BC26 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);TENOR=Os08t0494350-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	24402687	24403874	.	+	0	Parent=Os08t0494350-00
Chr08	irgsp1_rep	mRNA	24404103	24406262	.	-	.	ID=Os08t0494375-00;Name=Os08t0494375-00;Locus_id=Os08g0494375;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8B4W8 (UniProt);TENOR=Os08t0494375-00
Chr08	irgsp1_rep	CDS	24406256	24406262	.	-	0	Parent=Os08t0494375-00
Chr08	irgsp1_rep	CDS	24405520	24405632	.	-	2	Parent=Os08t0494375-00
Chr08	irgsp1_rep	CDS	24404489	24404609	.	-	0	Parent=Os08t0494375-00
Chr08	irgsp1_rep	CDS	24404103	24404380	.	-	2	Parent=Os08t0494375-00
Chr08	irgsp1_rep	mRNA	24407723	24412606	.	+	.	ID=Os08t0494400-01;Name=Os08t0494400-01;Locus_id=Os08g0494400;Note=Conserved hypothetical protein.;Transcript_evidence=AK065332 (DDBJ%2C Best hit);ORF_evidence=B9G1K3 (UniProt);NIAS_FLcDNA=J013000K10;Expression=AK065332;TENOR=Os08t0494400-01;KEGG=Os08t0494400-01
Chr08	irgsp1_rep	five_prime_UTR	24407723	24407838	.	+	.	Parent=Os08t0494400-01
Chr08	irgsp1_rep	CDS	24407839	24407918	.	+	0	Parent=Os08t0494400-01
Chr08	irgsp1_rep	CDS	24408121	24408180	.	+	1	Parent=Os08t0494400-01
Chr08	irgsp1_rep	CDS	24409519	24409818	.	+	1	Parent=Os08t0494400-01
Chr08	irgsp1_rep	CDS	24410539	24410815	.	+	1	Parent=Os08t0494400-01
Chr08	irgsp1_rep	three_prime_UTR	24410816	24411213	.	+	.	Parent=Os08t0494400-01
Chr08	irgsp1_rep	three_prime_UTR	24411524	24411669	.	+	.	Parent=Os08t0494400-01
Chr08	irgsp1_rep	three_prime_UTR	24411775	24411813	.	+	.	Parent=Os08t0494400-01
Chr08	irgsp1_rep	three_prime_UTR	24412232	24412606	.	+	.	Parent=Os08t0494400-01
Chr08	irgsp1_rep	mRNA	24452213	24456560	.	+	.	ID=Os08t0495300-01;Name=Os08t0495300-01;Locus_id=Os08g0495300;Note=Similar to cDNA clone:J013000K10%2C full insert sequence.;Transcript_evidence=AK287721 (DDBJ%2C Best hit);ORF_evidence=B9G1K9 (UniProt);InterPro=Protein of unknown function DUF3615 (IPR022059);NIAS_FLcDNA=J065136I15;TENOR=Os08t0495300-01;KEGG=Os08t0495300-01
Chr08	irgsp1_rep	five_prime_UTR	24452213	24452288	.	+	.	Parent=Os08t0495300-01
Chr08	irgsp1_rep	CDS	24452289	24452368	.	+	0	Parent=Os08t0495300-01
Chr08	irgsp1_rep	CDS	24452559	24452627	.	+	1	Parent=Os08t0495300-01
Chr08	irgsp1_rep	CDS	24454342	24454641	.	+	1	Parent=Os08t0495300-01
Chr08	irgsp1_rep	CDS	24455367	24455550	.	+	1	Parent=Os08t0495300-01
Chr08	irgsp1_rep	CDS	24455659	24455875	.	+	0	Parent=Os08t0495300-01
Chr08	irgsp1_rep	CDS	24456157	24456302	.	+	2	Parent=Os08t0495300-01
Chr08	irgsp1_rep	CDS	24456373	24456435	.	+	0	Parent=Os08t0495300-01
Chr08	irgsp1_rep	three_prime_UTR	24456436	24456560	.	+	.	Parent=Os08t0495300-01
Chr08	irgsp1_rep	mRNA	24464442	24467893	.	+	.	ID=Os08t0495500-01;Name=Os08t0495500-01;Locus_id=Os08g0495500;Note=Kelch related domain containing protein.;Transcript_evidence=AK100472 (DDBJ%2C Best hit);ORF_evidence=NP_001150189.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069);NIAS_FLcDNA=J023093I21;Expression=AK100472;TENOR=Os08t0495500-01;KEGG=Os08t0495500-01
Chr08	irgsp1_rep	five_prime_UTR	24464442	24464654	.	+	.	Parent=Os08t0495500-01
Chr08	irgsp1_rep	CDS	24464655	24464770	.	+	0	Parent=Os08t0495500-01
Chr08	irgsp1_rep	CDS	24465637	24465794	.	+	1	Parent=Os08t0495500-01
Chr08	irgsp1_rep	CDS	24466169	24466284	.	+	2	Parent=Os08t0495500-01
Chr08	irgsp1_rep	CDS	24467040	24467642	.	+	0	Parent=Os08t0495500-01
Chr08	irgsp1_rep	three_prime_UTR	24467643	24467893	.	+	.	Parent=Os08t0495500-01
Chr08	irgsp1_rep	mRNA	24475222	24479499	.	+	.	ID=Os08t0495800-01;Name=Os08t0495800-01;Locus_id=Os08g0495800;Oryzabase Gene Symbol Synonym(s)=Osh69;Oryzabase Gene Name Synonym(s)=alkaline alpha-galactosidase;Note=Raffinose synthase family protein.;Transcript_evidence=AK067381 (DDBJ%2C Best hit);ORF_evidence=NP_001105775.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Raffinose synthase (IPR008811),Aldolase-type TIM barrel (IPR013785),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J013102C10;Oryzabase=13864;Expression=AK067381;TENOR=Os08t0495800-01;KEGG=Os08t0495800-01
Chr08	irgsp1_rep	five_prime_UTR	24475222	24475327	.	+	.	Parent=Os08t0495800-01
Chr08	irgsp1_rep	CDS	24475328	24475518	.	+	0	Parent=Os08t0495800-01
Chr08	irgsp1_rep	CDS	24475968	24476218	.	+	1	Parent=Os08t0495800-01
Chr08	irgsp1_rep	CDS	24476334	24476424	.	+	2	Parent=Os08t0495800-01
Chr08	irgsp1_rep	CDS	24476623	24476671	.	+	1	Parent=Os08t0495800-01
Chr08	irgsp1_rep	CDS	24476769	24476860	.	+	0	Parent=Os08t0495800-01
Chr08	irgsp1_rep	CDS	24476956	24477063	.	+	1	Parent=Os08t0495800-01
Chr08	irgsp1_rep	CDS	24477154	24477288	.	+	1	Parent=Os08t0495800-01
Chr08	irgsp1_rep	CDS	24477395	24477805	.	+	1	Parent=Os08t0495800-01
Chr08	irgsp1_rep	CDS	24477906	24478047	.	+	1	Parent=Os08t0495800-01
Chr08	irgsp1_rep	CDS	24478135	24478202	.	+	0	Parent=Os08t0495800-01
Chr08	irgsp1_rep	CDS	24478314	24478448	.	+	1	Parent=Os08t0495800-01
Chr08	irgsp1_rep	CDS	24478556	24478773	.	+	1	Parent=Os08t0495800-01
Chr08	irgsp1_rep	CDS	24478876	24479075	.	+	2	Parent=Os08t0495800-01
Chr08	irgsp1_rep	CDS	24479199	24479246	.	+	0	Parent=Os08t0495800-01
Chr08	irgsp1_rep	three_prime_UTR	24479247	24479499	.	+	.	Parent=Os08t0495800-01
Chr08	irgsp1_rep	mRNA	24475228	24479497	.	+	.	ID=Os08t0495800-02;Name=Os08t0495800-02;Locus_id=Os08g0495800;Oryzabase Gene Symbol Synonym(s)=Osh69;Oryzabase Gene Name Synonym(s)=alkaline alpha-galactosidase;Note=Similar to alkaline alpha galactosidase 3.;Transcript_evidence=AK067229 (DDBJ%2C Best hit);ORF_evidence=NP_001105775.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Raffinose synthase (IPR008811),Aldolase-type TIM barrel (IPR013785),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J013096C15;Oryzabase=13864;Expression=AK067229;TENOR=Os08t0495800-02;KEGG=Os08t0495800-02
Chr08	irgsp1_rep	five_prime_UTR	24475228	24475327	.	+	.	Parent=Os08t0495800-02
Chr08	irgsp1_rep	CDS	24475328	24475518	.	+	0	Parent=Os08t0495800-02
Chr08	irgsp1_rep	CDS	24475968	24476218	.	+	1	Parent=Os08t0495800-02
Chr08	irgsp1_rep	CDS	24476334	24476424	.	+	2	Parent=Os08t0495800-02
Chr08	irgsp1_rep	CDS	24476623	24476671	.	+	1	Parent=Os08t0495800-02
Chr08	irgsp1_rep	CDS	24476769	24476860	.	+	0	Parent=Os08t0495800-02
Chr08	irgsp1_rep	CDS	24476956	24477063	.	+	1	Parent=Os08t0495800-02
Chr08	irgsp1_rep	CDS	24477154	24477288	.	+	1	Parent=Os08t0495800-02
Chr08	irgsp1_rep	CDS	24477395	24477805	.	+	1	Parent=Os08t0495800-02
Chr08	irgsp1_rep	CDS	24477906	24478047	.	+	1	Parent=Os08t0495800-02
Chr08	irgsp1_rep	CDS	24478135	24478202	.	+	0	Parent=Os08t0495800-02
Chr08	irgsp1_rep	CDS	24478314	24478448	.	+	1	Parent=Os08t0495800-02
Chr08	irgsp1_rep	CDS	24478556	24478773	.	+	1	Parent=Os08t0495800-02
Chr08	irgsp1_rep	CDS	24478876	24479246	.	+	2	Parent=Os08t0495800-02
Chr08	irgsp1_rep	three_prime_UTR	24479247	24479497	.	+	.	Parent=Os08t0495800-02
Chr08	irgsp1_rep	mRNA	24475298	24479246	.	-	.	ID=Os08t0495866-00;Name=Os08t0495866-00;Locus_id=Os08g0495866;Note=Hypothetical protein.;Transcript_evidence=tplb0060c15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0495866-00
Chr08	irgsp1_rep	five_prime_UTR	24478886	24479246	.	-	.	Parent=Os08t0495866-00
Chr08	irgsp1_rep	five_prime_UTR	24478553	24478784	.	-	.	Parent=Os08t0495866-00
Chr08	irgsp1_rep	five_prime_UTR	24478256	24478445	.	-	.	Parent=Os08t0495866-00
Chr08	irgsp1_rep	five_prime_UTR	24477900	24478057	.	-	.	Parent=Os08t0495866-00
Chr08	irgsp1_rep	five_prime_UTR	24477414	24477799	.	-	.	Parent=Os08t0495866-00
Chr08	irgsp1_rep	five_prime_UTR	24477164	24477303	.	-	.	Parent=Os08t0495866-00
Chr08	irgsp1_rep	five_prime_UTR	24476954	24477076	.	-	.	Parent=Os08t0495866-00
Chr08	irgsp1_rep	five_prime_UTR	24476731	24476858	.	-	.	Parent=Os08t0495866-00
Chr08	irgsp1_rep	five_prime_UTR	24476333	24476432	.	-	.	Parent=Os08t0495866-00
Chr08	irgsp1_rep	five_prime_UTR	24476046	24476217	.	-	.	Parent=Os08t0495866-00
Chr08	irgsp1_rep	CDS	24475955	24476045	.	-	0	Parent=Os08t0495866-00
Chr08	irgsp1_rep	CDS	24475298	24475513	.	-	2	Parent=Os08t0495866-00
Chr08	irgsp1_rep	mRNA	24482382	24486043	.	+	.	ID=Os08t0496000-01;Name=Os08t0496000-01;Locus_id=Os08g0496000;Note=CytoChrome oxidase assembly family protein.;Transcript_evidence=AK103187 (DDBJ%2C Best hit);ORF_evidence=NP_200420.1 (RefSeq);GO=Biological Process: protein complex assembly (GO:0006461),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: membrane (GO:0016020),Molecular Function: oxidoreductase activity%2C acting on the CH-CH group of donors (GO:0016627);InterPro=Heme A synthase/Protoheme IX farnesyltransferase (IPR003780);NIAS_FLcDNA=J033121L24;Expression=AK103187;TENOR=Os08t0496000-01;KEGG=Os08t0496000-01
Chr08	irgsp1_rep	five_prime_UTR	24482382	24482473	.	+	.	Parent=Os08t0496000-01
Chr08	irgsp1_rep	CDS	24482474	24482719	.	+	0	Parent=Os08t0496000-01
Chr08	irgsp1_rep	CDS	24483157	24483473	.	+	0	Parent=Os08t0496000-01
Chr08	irgsp1_rep	CDS	24484233	24484458	.	+	1	Parent=Os08t0496000-01
Chr08	irgsp1_rep	CDS	24484544	24484789	.	+	0	Parent=Os08t0496000-01
Chr08	irgsp1_rep	CDS	24484877	24484987	.	+	0	Parent=Os08t0496000-01
Chr08	irgsp1_rep	CDS	24485293	24485424	.	+	0	Parent=Os08t0496000-01
Chr08	irgsp1_rep	CDS	24485539	24485709	.	+	0	Parent=Os08t0496000-01
Chr08	irgsp1_rep	three_prime_UTR	24485710	24486043	.	+	.	Parent=Os08t0496000-01
Chr08	irgsp1_rep	mRNA	24492200	24492914	.	+	.	ID=Os08t0496100-00;Name=Os08t0496100-00;Locus_id=Os08g0496100;Note=Hypothetical conserved gene.;Transcript_evidence=EU952779 (DDBJ);ORF_evidence=Q6Z5C4 (UniProt);TENOR=Os08t0496100-00;KEGG=Os08t0496100-00
Chr08	irgsp1_rep	five_prime_UTR	24492200	24492422	.	+	.	Parent=Os08t0496100-00
Chr08	irgsp1_rep	CDS	24492423	24492887	.	+	0	Parent=Os08t0496100-00
Chr08	irgsp1_rep	three_prime_UTR	24492888	24492914	.	+	.	Parent=Os08t0496100-00
Chr08	irgsp1_rep	mRNA	24495323	24498990	.	-	.	ID=Os08t0496150-00;Name=Os08t0496150-00;Locus_id=Os08g0496150;Note=Hypothetical protein.;Transcript_evidence=tplb0056b02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0496150-00
Chr08	irgsp1_rep	five_prime_UTR	24498632	24498990	.	-	.	Parent=Os08t0496150-00
Chr08	irgsp1_rep	five_prime_UTR	24498073	24498156	.	-	.	Parent=Os08t0496150-00
Chr08	irgsp1_rep	CDS	24497836	24498072	.	-	0	Parent=Os08t0496150-00
Chr08	irgsp1_rep	three_prime_UTR	24497573	24497835	.	-	.	Parent=Os08t0496150-00
Chr08	irgsp1_rep	three_prime_UTR	24497056	24497425	.	-	.	Parent=Os08t0496150-00
Chr08	irgsp1_rep	three_prime_UTR	24496631	24496923	.	-	.	Parent=Os08t0496150-00
Chr08	irgsp1_rep	three_prime_UTR	24495700	24496097	.	-	.	Parent=Os08t0496150-00
Chr08	irgsp1_rep	three_prime_UTR	24495323	24495491	.	-	.	Parent=Os08t0496150-00
Chr08	irgsp1_rep	mRNA	24495323	24499042	.	+	.	ID=Os08t0496200-00;Name=Os08t0496200-00;Locus_id=Os08g0496200;CGSNL Gene Symbol=GAUT7;CGSNL Gene Name=GALACTURONOSYLTRANSFERASE 7;Oryzabase Gene Symbol Synonym(s)=OsSTA216%2C OsGAUT7;Oryzabase Gene Name Synonym(s)=galacturonosyltransferase 7;Note=Similar to Glycosyl transferase-like protein (Fragment).;Transcript_evidence=AK250262 (DDBJ);ORF_evidence=Q2L3A3 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 8 (IPR002495);Oryzabase=19488;TENOR=Os08t0496200-00;KEGG=Os08t0496200-00
Chr08	irgsp1_rep	five_prime_UTR	24495323	24495486	.	+	.	Parent=Os08t0496200-00
Chr08	irgsp1_rep	five_prime_UTR	24495600	24495640	.	+	.	Parent=Os08t0496200-00
Chr08	irgsp1_rep	five_prime_UTR	24495734	24495991	.	+	.	Parent=Os08t0496200-00
Chr08	irgsp1_rep	CDS	24495992	24496126	.	+	0	Parent=Os08t0496200-00
Chr08	irgsp1_rep	CDS	24496649	24496920	.	+	0	Parent=Os08t0496200-00
Chr08	irgsp1_rep	CDS	24497058	24497415	.	+	1	Parent=Os08t0496200-00
Chr08	irgsp1_rep	CDS	24497561	24498136	.	+	0	Parent=Os08t0496200-00
Chr08	irgsp1_rep	CDS	24498616	24498891	.	+	0	Parent=Os08t0496200-00
Chr08	irgsp1_rep	three_prime_UTR	24498892	24499042	.	+	.	Parent=Os08t0496200-00
Chr08	irgsp1_rep	mRNA	24503950	24514961	.	+	.	ID=Os08t0496400-01;Name=Os08t0496400-01;Locus_id=Os08g0496400;Note=Conserved hypothetical protein.;Transcript_evidence=AK110964 (DDBJ%2C Best hit);ORF_evidence=Q7F8V1 (UniProt);NIAS_FLcDNA=002-174-B04;Expression=AK110964;TENOR=Os08t0496400-01;KEGG=Os08t0496400-01
Chr08	irgsp1_rep	five_prime_UTR	24503950	24504079	.	+	.	Parent=Os08t0496400-01
Chr08	irgsp1_rep	CDS	24504080	24504828	.	+	0	Parent=Os08t0496400-01
Chr08	irgsp1_rep	CDS	24514300	24514537	.	+	1	Parent=Os08t0496400-01
Chr08	irgsp1_rep	CDS	24514631	24514717	.	+	0	Parent=Os08t0496400-01
Chr08	irgsp1_rep	three_prime_UTR	24514718	24514961	.	+	.	Parent=Os08t0496400-01
Chr08	irgsp1_rep	mRNA	24517598	24518559	.	+	.	ID=Os08t0496500-01;Name=Os08t0496500-01;Locus_id=Os08g0496500;RAP-DB Gene Symbol Synonym(s)=OsHAP5D%2C OsNF-YC6;RAP-DB Gene Name Synonym(s)=Nuclear factor Y C6 subunit;CGSNL Gene Symbol=HAP5D;CGSNL Gene Name=HAP5D SUBUNIT OF CCAAT-BOX BINDING COMPLEX;Oryzabase Gene Symbol Synonym(s)=OsHAP5D%2C NF-YC%2C CBF-C%2C OsNF-YC6%2C Os-NF-YC6%2C NF-YC6%2C NFYC6;Oryzabase Gene Name Synonym(s)=Nuclear factor Y C6 subunit%2C Nuclear factor Y C subunit 6%2C NUCLEAR FACTOR-Y subunit C6%2C NUCLEAR FACTOR-Y subunit NF-YC6%2C NF-YC subunit 6%2C NF-YC family 6;Note=NUCLEAR FACTOR Y (NF-Y) transcription factor%2C Control of heading date;Transcript_evidence=AK108510;ORF_evidence=Q9XE33;GO=Molecular Function: protein heterodimerization activity (GO:0046982);InterPro=Histone-fold (IPR009072),Transcription factor CBF/NF-Y/archaeal histone domain (IPR003958);NIAS_FLcDNA=002-144-A03;Manual Curation=January 25%2C 2019;Literature_PMID=30107076,26542958;Oryzabase=8494;Expression=AK108510;TENOR=Os08t0496500-01;KEGG=Os08t0496500-01;Subcellular location=nucleus (GO:0005634)
Chr08	irgsp1_rep	five_prime_UTR	24517598	24517679	.	+	.	Parent=Os08t0496500-01
Chr08	irgsp1_rep	CDS	24517680	24518297	.	+	0	Parent=Os08t0496500-01
Chr08	irgsp1_rep	three_prime_UTR	24518298	24518559	.	+	.	Parent=Os08t0496500-01
Chr08	irgsp1_rep	mRNA	24519872	24521682	.	-	.	ID=Os08t0496600-00;Name=Os08t0496600-00;Locus_id=Os08g0496600;Note=Hypothetical conserved gene.;Transcript_evidence=FP095819 (DDBJ);ORF_evidence=Q7F8V1 (UniProt);TENOR=Os08t0496600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	24521545	24521682	.	-	.	Parent=Os08t0496600-00
Chr08	irgsp1_rep	CDS	24520810	24521544	.	-	0	Parent=Os08t0496600-00
Chr08	irgsp1_rep	three_prime_UTR	24520797	24520809	.	-	.	Parent=Os08t0496600-00
Chr08	irgsp1_rep	three_prime_UTR	24519872	24520089	.	-	.	Parent=Os08t0496600-00
Chr08	irgsp1_rep	mRNA	24528147	24529130	.	+	.	ID=Os08t0496700-00;Name=Os08t0496700-00;Locus_id=Os08g0496700;Note=Myb/SANT-like domain domain containing protein.;Transcript_evidence=BT042069 (DDBJ);ORF_evidence=A3BUG6 (UniProt);InterPro=Myb/SANT-like domain (IPR024752);TENOR=Os08t0496700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	24528147	24528480	.	+	0	Parent=Os08t0496700-00
Chr08	irgsp1_rep	CDS	24528577	24529130	.	+	2	Parent=Os08t0496700-00
Chr08	irgsp1_rep	mRNA	24530185	24530787	.	-	.	ID=Os08t0496750-00;Name=Os08t0496750-00;Locus_id=Os08g0496750;Note=Similar to CBL-interacting protein kinase 33.;Transcript_evidence=EU957398 (DDBJ);ORF_evidence=Q2RAX3 (UniProt);TENOR=Os08t0496750-00
Chr08	irgsp1_rep	five_prime_UTR	24530767	24530787	.	-	.	Parent=Os08t0496750-00
Chr08	irgsp1_rep	CDS	24530674	24530766	.	-	0	Parent=Os08t0496750-00
Chr08	irgsp1_rep	CDS	24530239	24530313	.	-	0	Parent=Os08t0496750-00
Chr08	irgsp1_rep	three_prime_UTR	24530185	24530238	.	-	.	Parent=Os08t0496750-00
Chr08	irgsp1_rep	mRNA	24533261	24534888	.	+	.	ID=Os08t0496800-01;Name=Os08t0496800-01;Locus_id=Os08g0496800;CGSNL Gene Symbol=RAFTIN1;CGSNL Gene Name=RAFTIN1;Oryzabase Gene Symbol Synonym(s)=OsRAFTIN1%2C BURP13%2C OsBURP13%2C Os RAFTIN1;Oryzabase Gene Name Synonym(s)=rice raftin1%2C raftin1%2C BURP domain-containing protein 13%2C Protein RAFTIN 1%2C RAFTIN1protein;Note=Similar to RAFTIN1a protein (RAFTIN1a anther protein).;Transcript_evidence=AK120942 (DDBJ%2C Best hit);ORF_evidence=Q7F8U7 (UniProt);InterPro=BURP (IPR004873);NIAS_FLcDNA=J023037I21;Oryzabase=3015;Expression=AK120942;TENOR=Os08t0496800-01;KEGG=Os08t0496800-01
Chr08	irgsp1_rep	five_prime_UTR	24533261	24533334	.	+	.	Parent=Os08t0496800-01
Chr08	irgsp1_rep	CDS	24533335	24533391	.	+	0	Parent=Os08t0496800-01
Chr08	irgsp1_rep	CDS	24533488	24533584	.	+	0	Parent=Os08t0496800-01
Chr08	irgsp1_rep	CDS	24533667	24534751	.	+	2	Parent=Os08t0496800-01
Chr08	irgsp1_rep	three_prime_UTR	24534752	24534888	.	+	.	Parent=Os08t0496800-01
Chr08	irgsp1_rep	mRNA	24537686	24542169	.	-	.	ID=Os08t0496900-01;Name=Os08t0496900-01;Locus_id=Os08g0496900;Note=Nonaspanin (TM9SF) family protein.;Transcript_evidence=AK102663 (DDBJ%2C Best hit);ORF_evidence=NP_001151523.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Nonaspanin (TM9SF) (IPR004240);NIAS_FLcDNA=J033101K01;Expression=AK102663;TENOR=Os08t0496900-01;KEGG=Os08t0496900-01
Chr08	irgsp1_rep	five_prime_UTR	24542063	24542169	.	-	.	Parent=Os08t0496900-01
Chr08	irgsp1_rep	five_prime_UTR	24540149	24540193	.	-	.	Parent=Os08t0496900-01
Chr08	irgsp1_rep	CDS	24538163	24540148	.	-	0	Parent=Os08t0496900-01
Chr08	irgsp1_rep	three_prime_UTR	24537686	24538162	.	-	.	Parent=Os08t0496900-01
Chr08	irgsp1_rep	mRNA	24560893	24565791	.	+	.	ID=Os08t0497300-01;Name=Os08t0497300-01;Locus_id=Os08g0497300;Oryzabase Gene Symbol Synonym(s)=OsSNDP9%2C SNDP9;Oryzabase Gene Name Synonym(s)=Sec14-nodulin domain-containing protein 9%2C Sec14-nodulin domain protein 9;Note=Cellular retinaldehyde binding/alpha-tocopherol transport family protein.;Transcript_evidence=AK070235 (DDBJ%2C Best hit);ORF_evidence=B6U127 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: intracellular (GO:0005622),Molecular Function: transporter activity (GO:0005215);InterPro=Cellular retinaldehyde binding/alpha-tocopherol transport (IPR001071),Cellular retinaldehyde-binding/triple function%2C C-terminal (IPR001251),Cellular retinaldehyde-binding/triple function%2C N-terminal (IPR008273),Phosphatidylinositol transfer protein-like%2C N-terminal (IPR011074);NIAS_FLcDNA=J023046G11;Oryzabase=12293;Expression=AK070235;TENOR=Os08t0497300-01;KEGG=Os08t0497300-01
Chr08	irgsp1_rep	five_prime_UTR	24560893	24561106	.	+	.	Parent=Os08t0497300-01
Chr08	irgsp1_rep	five_prime_UTR	24561602	24561666	.	+	.	Parent=Os08t0497300-01
Chr08	irgsp1_rep	CDS	24561667	24561673	.	+	0	Parent=Os08t0497300-01
Chr08	irgsp1_rep	CDS	24561766	24562039	.	+	2	Parent=Os08t0497300-01
Chr08	irgsp1_rep	CDS	24562132	24562231	.	+	1	Parent=Os08t0497300-01
Chr08	irgsp1_rep	CDS	24562331	24562597	.	+	0	Parent=Os08t0497300-01
Chr08	irgsp1_rep	CDS	24562697	24562774	.	+	0	Parent=Os08t0497300-01
Chr08	irgsp1_rep	CDS	24562858	24562959	.	+	0	Parent=Os08t0497300-01
Chr08	irgsp1_rep	CDS	24563040	24563089	.	+	0	Parent=Os08t0497300-01
Chr08	irgsp1_rep	CDS	24563194	24563293	.	+	1	Parent=Os08t0497300-01
Chr08	irgsp1_rep	CDS	24563400	24563496	.	+	0	Parent=Os08t0497300-01
Chr08	irgsp1_rep	CDS	24563614	24563732	.	+	2	Parent=Os08t0497300-01
Chr08	irgsp1_rep	CDS	24563901	24564060	.	+	0	Parent=Os08t0497300-01
Chr08	irgsp1_rep	CDS	24564692	24565053	.	+	2	Parent=Os08t0497300-01
Chr08	irgsp1_rep	CDS	24565317	24565394	.	+	0	Parent=Os08t0497300-01
Chr08	irgsp1_rep	CDS	24565516	24565536	.	+	0	Parent=Os08t0497300-01
Chr08	irgsp1_rep	three_prime_UTR	24565537	24565791	.	+	.	Parent=Os08t0497300-01
Chr08	irgsp1_rep	mRNA	24560931	24563700	.	+	.	ID=Os08t0497300-02;Name=Os08t0497300-02;Locus_id=Os08g0497300;Oryzabase Gene Symbol Synonym(s)=OsSNDP9%2C SNDP9;Oryzabase Gene Name Synonym(s)=Sec14-nodulin domain-containing protein 9%2C Sec14-nodulin domain protein 9;Note=Similar to SEC14 cytosolic factor (Secretion factor 14) family protein (Fragment).;Transcript_evidence=AK068384 (DDBJ%2C Best hit);ORF_evidence=Q2L3A5 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: intracellular (GO:0005622),Molecular Function: transporter activity (GO:0005215);InterPro=Cellular retinaldehyde binding/alpha-tocopherol transport (IPR001071),Cellular retinaldehyde-binding/triple function%2C C-terminal (IPR001251),Cellular retinaldehyde-binding/triple function%2C N-terminal (IPR008273),Phosphatidylinositol transfer protein-like%2C N-terminal (IPR011074);NIAS_FLcDNA=J013146A10;Oryzabase=12293;TENOR=Os08t0497300-02
Chr08	irgsp1_rep	five_prime_UTR	24560931	24561106	.	+	.	Parent=Os08t0497300-02
Chr08	irgsp1_rep	five_prime_UTR	24561602	24561666	.	+	.	Parent=Os08t0497300-02
Chr08	irgsp1_rep	CDS	24561667	24561673	.	+	0	Parent=Os08t0497300-02
Chr08	irgsp1_rep	CDS	24561766	24562039	.	+	2	Parent=Os08t0497300-02
Chr08	irgsp1_rep	CDS	24562132	24562231	.	+	1	Parent=Os08t0497300-02
Chr08	irgsp1_rep	CDS	24562331	24562597	.	+	0	Parent=Os08t0497300-02
Chr08	irgsp1_rep	CDS	24562697	24562774	.	+	0	Parent=Os08t0497300-02
Chr08	irgsp1_rep	CDS	24562858	24562959	.	+	0	Parent=Os08t0497300-02
Chr08	irgsp1_rep	CDS	24563040	24563089	.	+	0	Parent=Os08t0497300-02
Chr08	irgsp1_rep	CDS	24563194	24563293	.	+	1	Parent=Os08t0497300-02
Chr08	irgsp1_rep	CDS	24563400	24563496	.	+	0	Parent=Os08t0497300-02
Chr08	irgsp1_rep	CDS	24563614	24563700	.	+	2	Parent=Os08t0497300-02
Chr08	irgsp1_rep	mRNA	24562333	24566089	.	+	.	ID=Os08t0497300-03;Name=Os08t0497300-03;Locus_id=Os08g0497300;Oryzabase Gene Symbol Synonym(s)=OsSNDP9%2C SNDP9;Oryzabase Gene Name Synonym(s)=Sec14-nodulin domain-containing protein 9%2C Sec14-nodulin domain protein 9;Note=Similar to phosphatidylinositol transporter/ transporter.;Transcript_evidence=AK059604 (DDBJ%2C Best hit);ORF_evidence=B6U127 (UniProt);InterPro=Cellular retinaldehyde-binding/triple function%2C C-terminal (IPR001251);NIAS_FLcDNA=001-030-E10;Oryzabase=12293;Expression=AK059604;TENOR=Os08t0497300-03;KEGG=Os08t0497300-03
Chr08	irgsp1_rep	five_prime_UTR	24562333	24562333	.	+	.	Parent=Os08t0497300-03
Chr08	irgsp1_rep	CDS	24562334	24562597	.	+	0	Parent=Os08t0497300-03
Chr08	irgsp1_rep	CDS	24562697	24562774	.	+	0	Parent=Os08t0497300-03
Chr08	irgsp1_rep	CDS	24562858	24562959	.	+	0	Parent=Os08t0497300-03
Chr08	irgsp1_rep	CDS	24563040	24563089	.	+	0	Parent=Os08t0497300-03
Chr08	irgsp1_rep	CDS	24563194	24563293	.	+	1	Parent=Os08t0497300-03
Chr08	irgsp1_rep	CDS	24563400	24563496	.	+	0	Parent=Os08t0497300-03
Chr08	irgsp1_rep	CDS	24563614	24563732	.	+	2	Parent=Os08t0497300-03
Chr08	irgsp1_rep	CDS	24563901	24564060	.	+	0	Parent=Os08t0497300-03
Chr08	irgsp1_rep	CDS	24564692	24565053	.	+	2	Parent=Os08t0497300-03
Chr08	irgsp1_rep	CDS	24565317	24565394	.	+	0	Parent=Os08t0497300-03
Chr08	irgsp1_rep	CDS	24565516	24565536	.	+	0	Parent=Os08t0497300-03
Chr08	irgsp1_rep	three_prime_UTR	24565537	24566089	.	+	.	Parent=Os08t0497300-03
Chr08	irgsp1_rep	mRNA	24575639	24579356	.	+	.	ID=Os08t0497600-01;Name=Os08t0497600-01;Locus_id=Os08g0497600;RAP-DB Gene Symbol Synonym(s)=SRWD1%2C SRWD1%2C OsWD40-162;RAP-DB Gene Name Synonym(s)=SALT RESPONSIVE WD40 PROTEIN 1%2C salt responsive WD40 protein 1;CGSNL Gene Symbol=SRWD1;CGSNL Gene Name=SALT RESPONSIVE WD40 PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=SRWD1%2C OsWD40-162;Oryzabase Gene Name Synonym(s)=salt responsive WD40 protein 1;Note=WD40 subfamily protein%2C Salt stress;Transcript_evidence=AK112033 (Genbank),AK121435 (Genbank);ORF_evidence=Q7F8T9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40-repeat-containing domain (IPR017986);NIAS_FLcDNA=J023140A17,001-040-C09;Manual Curation=June 9%2C 2009;Literature_PMID=18755256;Oryzabase=8210;TENOR=Os08t0497600-01
Chr08	irgsp1_rep	five_prime_UTR	24575639	24575834	.	+	.	Parent=Os08t0497600-01
Chr08	irgsp1_rep	five_prime_UTR	24575923	24575925	.	+	.	Parent=Os08t0497600-01
Chr08	irgsp1_rep	CDS	24575926	24576024	.	+	0	Parent=Os08t0497600-01
Chr08	irgsp1_rep	CDS	24576375	24576540	.	+	0	Parent=Os08t0497600-01
Chr08	irgsp1_rep	CDS	24576638	24576726	.	+	2	Parent=Os08t0497600-01
Chr08	irgsp1_rep	CDS	24577397	24577531	.	+	0	Parent=Os08t0497600-01
Chr08	irgsp1_rep	CDS	24577653	24577763	.	+	0	Parent=Os08t0497600-01
Chr08	irgsp1_rep	CDS	24577861	24577952	.	+	0	Parent=Os08t0497600-01
Chr08	irgsp1_rep	CDS	24578041	24578146	.	+	1	Parent=Os08t0497600-01
Chr08	irgsp1_rep	CDS	24578340	24578426	.	+	0	Parent=Os08t0497600-01
Chr08	irgsp1_rep	CDS	24578518	24578931	.	+	0	Parent=Os08t0497600-01
Chr08	irgsp1_rep	three_prime_UTR	24578932	24579356	.	+	.	Parent=Os08t0497600-01
Chr08	irgsp1_rep	mRNA	24581335	24583695	.	-	.	ID=Os08t0497900-01;Name=Os08t0497900-01;Locus_id=Os08g0497900;Note=Conserved hypothetical protein.;Transcript_evidence=AK071174 (DDBJ%2C Best hit);ORF_evidence=B8BC39 (UniProt);NIAS_FLcDNA=J023085C17;Expression=AK071174;TENOR=Os08t0497900-01;KEGG=Os08t0497900-01
Chr08	irgsp1_rep	five_prime_UTR	24583532	24583695	.	-	.	Parent=Os08t0497900-01
Chr08	irgsp1_rep	CDS	24582676	24583531	.	-	0	Parent=Os08t0497900-01
Chr08	irgsp1_rep	CDS	24581503	24582035	.	-	2	Parent=Os08t0497900-01
Chr08	irgsp1_rep	three_prime_UTR	24581335	24581502	.	-	.	Parent=Os08t0497900-01
Chr08	irgsp1_rep	mRNA	24586613	24587908	.	-	.	ID=Os08t0498100-01;Name=Os08t0498100-01;Locus_id=Os08g0498100;Oryzabase Gene Symbol Synonym(s)=OsOMT26%2C ROMT-15%2C ROMT15%2C COA20%2C OsCCoAOMT%2C CCoAOMT;Oryzabase Gene Name Synonym(s)=O-Methyltransferase 26%2C caffeoyl-CoA O-methyltransferase%2C caffeoyl CoA O-methyltransferase 20%2C Caffeoyl coenzyme A 3-O-methyltransferase;Note=Similar to Caffeoyl-CoA O-methyltransferase 2 (EC 2.1.1.104) (Trans-caffeoyl-CoA 3-O-methyltransferase 2) (CCoAMT-2) (CCoAOMT-2).;Transcript_evidence=AK071482 (DDBJ%2C Best hit),AK104326 (DDBJ%2C Best hit),AK104801 (DDBJ%2C Best hit);ORF_evidence=B4G080 (UniProt);GO=Molecular Function: O-methyltransferase activity (GO:0008171);InterPro=O-methyltransferase%2C family 3 (IPR002935);NIAS_FLcDNA=J023093N24,001-028-F10,001-040-C03;Oryzabase=11556;TENOR=Os08t0498100-01
Chr08	irgsp1_rep	five_prime_UTR	24587831	24587908	.	-	.	Parent=Os08t0498100-01
Chr08	irgsp1_rep	CDS	24587732	24587830	.	-	0	Parent=Os08t0498100-01
Chr08	irgsp1_rep	CDS	24587541	24587620	.	-	0	Parent=Os08t0498100-01
Chr08	irgsp1_rep	CDS	24586873	24587452	.	-	1	Parent=Os08t0498100-01
Chr08	irgsp1_rep	three_prime_UTR	24586613	24586872	.	-	.	Parent=Os08t0498100-01
Chr08	irgsp1_rep	mRNA	24593305	24597525	.	-	.	ID=Os08t0498400-01;Name=Os08t0498400-01;Locus_id=Os08g0498400;Oryzabase Gene Symbol Synonym(s)=ROMT-17%2C ROMT17%2C CCoAOMT1;Oryzabase Gene Name Synonym(s)=caffeoyl CoA O-methyltransferase 1%2C Caffeoyl-CoA O-methyltransferase 2;Note=Similar to Caffeoyl-CoA 3-O-methyltransferase (Fragment).;Transcript_evidence=AK061757 (DDBJ%2C Best hit);ORF_evidence=Q7XYW6 (UniProt);GO=Molecular Function: O-methyltransferase activity (GO:0008171);InterPro=O-methyltransferase%2C family 3 (IPR002935);NIAS_FLcDNA=001-039-A06;Oryzabase=11557;Expression=AK061757;TENOR=Os08t0498400-01;KEGG=Os08t0498400-01
Chr08	irgsp1_rep	five_prime_UTR	24597458	24597525	.	-	.	Parent=Os08t0498400-01
Chr08	irgsp1_rep	CDS	24597408	24597457	.	-	0	Parent=Os08t0498400-01
Chr08	irgsp1_rep	CDS	24594589	24594766	.	-	1	Parent=Os08t0498400-01
Chr08	irgsp1_rep	CDS	24594394	24594473	.	-	0	Parent=Os08t0498400-01
Chr08	irgsp1_rep	CDS	24593885	24594161	.	-	1	Parent=Os08t0498400-01
Chr08	irgsp1_rep	CDS	24593507	24593800	.	-	0	Parent=Os08t0498400-01
Chr08	irgsp1_rep	three_prime_UTR	24593305	24593506	.	-	.	Parent=Os08t0498400-01
Chr08	irgsp1_rep	mRNA	24593142	24594805	.	-	.	ID=Os08t0498400-02;Name=Os08t0498400-02;Locus_id=Os08g0498400;Oryzabase Gene Symbol Synonym(s)=ROMT-17%2C ROMT17%2C CCoAOMT1;Oryzabase Gene Name Synonym(s)=caffeoyl CoA O-methyltransferase 1%2C Caffeoyl-CoA O-methyltransferase 2;Note=Similar to Caffeoyl-CoA O-methyltransferase (Fragment).;Transcript_evidence=AK065515 (DDBJ%2C Best hit);ORF_evidence=A5A5Y9 (UniProt);GO=Molecular Function: O-methyltransferase activity (GO:0008171);InterPro=O-methyltransferase%2C family 3 (IPR002935);NIAS_FLcDNA=J013030H15;Oryzabase=11557;Expression=AK065515;TENOR=Os08t0498400-02;KEGG=Os08t0498400-02
Chr08	irgsp1_rep	five_prime_UTR	24594589	24594805	.	-	.	Parent=Os08t0498400-02
Chr08	irgsp1_rep	five_prime_UTR	24594203	24594473	.	-	.	Parent=Os08t0498400-02
Chr08	irgsp1_rep	CDS	24593885	24594202	.	-	0	Parent=Os08t0498400-02
Chr08	irgsp1_rep	CDS	24593507	24593800	.	-	0	Parent=Os08t0498400-02
Chr08	irgsp1_rep	three_prime_UTR	24593142	24593506	.	-	.	Parent=Os08t0498400-02
Chr08	irgsp1_rep	mRNA	24597691	24606587	.	-	.	ID=Os08t0498600-01;Name=Os08t0498600-01;Locus_id=Os08g0498600;Oryzabase Gene Symbol Synonym(s)=ROMT-27%2C ROMT27;Note=Similar to Caffeoyl-CoA 3-O-methyltransferase (Fragment).;Transcript_evidence=AK288380 (DDBJ%2C Best hit);ORF_evidence=Q6DUC9 (UniProt);GO=Molecular Function: O-methyltransferase activity (GO:0008171);InterPro=O-methyltransferase%2C family 3 (IPR002935);NIAS_FLcDNA=J090026L13;Oryzabase=11558;TENOR=Os08t0498600-01
Chr08	irgsp1_rep	five_prime_UTR	24605937	24606587	.	-	.	Parent=Os08t0498600-01
Chr08	irgsp1_rep	five_prime_UTR	24605705	24605844	.	-	.	Parent=Os08t0498600-01
Chr08	irgsp1_rep	five_prime_UTR	24605012	24605085	.	-	.	Parent=Os08t0498600-01
Chr08	irgsp1_rep	five_prime_UTR	24603754	24603907	.	-	.	Parent=Os08t0498600-01
Chr08	irgsp1_rep	five_prime_UTR	24598822	24598879	.	-	.	Parent=Os08t0498600-01
Chr08	irgsp1_rep	CDS	24598765	24598821	.	-	0	Parent=Os08t0498600-01
Chr08	irgsp1_rep	CDS	24598556	24598635	.	-	0	Parent=Os08t0498600-01
Chr08	irgsp1_rep	CDS	24597906	24598473	.	-	1	Parent=Os08t0498600-01
Chr08	irgsp1_rep	three_prime_UTR	24597691	24597905	.	-	.	Parent=Os08t0498600-01
Chr08	irgsp1_rep	mRNA	24597691	24606484	.	-	.	ID=Os08t0498600-02;Name=Os08t0498600-02;Locus_id=Os08g0498600;Oryzabase Gene Symbol Synonym(s)=ROMT-27%2C ROMT27;Note=Similar to Caffeoyl-CoA 3-O-methyltransferase (Fragment).;Transcript_evidence=AK106735 (DDBJ%2C Best hit);ORF_evidence=Q7X6T5 (UniProt);GO=Molecular Function: O-methyltransferase activity (GO:0008171);InterPro=O-methyltransferase%2C family 3 (IPR002935);NIAS_FLcDNA=002-115-A04;Oryzabase=11558;TENOR=Os08t0498600-02
Chr08	irgsp1_rep	five_prime_UTR	24605937	24606484	.	-	.	Parent=Os08t0498600-02
Chr08	irgsp1_rep	five_prime_UTR	24605705	24605844	.	-	.	Parent=Os08t0498600-02
Chr08	irgsp1_rep	five_prime_UTR	24605012	24605085	.	-	.	Parent=Os08t0498600-02
Chr08	irgsp1_rep	five_prime_UTR	24603754	24603907	.	-	.	Parent=Os08t0498600-02
Chr08	irgsp1_rep	five_prime_UTR	24598822	24598879	.	-	.	Parent=Os08t0498600-02
Chr08	irgsp1_rep	CDS	24598765	24598821	.	-	0	Parent=Os08t0498600-02
Chr08	irgsp1_rep	CDS	24598556	24598635	.	-	0	Parent=Os08t0498600-02
Chr08	irgsp1_rep	CDS	24597906	24598473	.	-	1	Parent=Os08t0498600-02
Chr08	irgsp1_rep	three_prime_UTR	24597691	24597905	.	-	.	Parent=Os08t0498600-02
Chr08	irgsp1_rep	mRNA	24621380	24622828	.	-	.	ID=Os08t0499000-01;Name=Os08t0499000-01;Locus_id=Os08g0499000;Note=Conserved hypothetical protein.;Transcript_evidence=AK107539 (DDBJ%2C Best hit);ORF_evidence=A2YWN4 (UniProt);NIAS_FLcDNA=002-129-H07;Expression=AK107539;TENOR=Os08t0499000-01;KEGG=Os08t0499000-01
Chr08	irgsp1_rep	five_prime_UTR	24622569	24622828	.	-	.	Parent=Os08t0499000-01
Chr08	irgsp1_rep	five_prime_UTR	24622450	24622474	.	-	.	Parent=Os08t0499000-01
Chr08	irgsp1_rep	CDS	24621478	24622449	.	-	0	Parent=Os08t0499000-01
Chr08	irgsp1_rep	three_prime_UTR	24621380	24621477	.	-	.	Parent=Os08t0499000-01
Chr08	irgsp1_rep	mRNA	24633503	24637192	.	+	.	ID=Os08t0499100-01;Name=Os08t0499100-01;Locus_id=Os08g0499100;Note=ATPase%2C AAA+ type%2C core domain containing protein.;Transcript_evidence=AK243638 (DDBJ%2C Best hit);ORF_evidence=XP_002864442.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182),ATPase%2C AAA+ type%2C core (IPR003593);NIAS_FLcDNA=J100087K14;TENOR=Os08t0499100-01;KEGG=Os08t0499100-01
Chr08	irgsp1_rep	five_prime_UTR	24633503	24633682	.	+	.	Parent=Os08t0499100-01
Chr08	irgsp1_rep	five_prime_UTR	24633916	24633986	.	+	.	Parent=Os08t0499100-01
Chr08	irgsp1_rep	CDS	24633987	24636947	.	+	0	Parent=Os08t0499100-01
Chr08	irgsp1_rep	three_prime_UTR	24636948	24637192	.	+	.	Parent=Os08t0499100-01
Chr08	irgsp1_rep	mRNA	24639010	24645616	.	+	.	ID=Os08t0499200-01;Name=Os08t0499200-01;Locus_id=Os08g0499200;CGSNL Gene Symbol=CBSCLC8;CGSNL Gene Name=CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 8;Oryzabase Gene Symbol Synonym(s)=OsCBSCLC8;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSCLC8%2C CBS domain containing protein OsCBSCLC8%2C CBS domain containing protein 8;Note=Similar to Chloride channel protein CLC-f (AtCLC-f). Splice isoform 2.;Transcript_evidence=AK120828 (DDBJ%2C Best hit);ORF_evidence=NP_564698.1 (RefSeq);GO=Biological Process: chloride transport (GO:0006821),Biological Process: metabolic process (GO:0008152),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ion channel activity (GO:0005216),Molecular Function: voltage-gated chloride channel activity (GO:0005247),Molecular Function: protein binding (GO:0005515);InterPro=Cystathionine beta-synthase%2C core (IPR000644),Chloride channel%2C voltage gated (IPR001807),Aldolase-type TIM barrel (IPR013785),Chloride channel%2C core (IPR014743);NIAS_FLcDNA=J023019F02;Oryzabase=10337;Expression=AK120828;TENOR=Os08t0499200-01;KEGG=Os08t0499200-01
Chr08	irgsp1_rep	five_prime_UTR	24639010	24639157	.	+	.	Parent=Os08t0499200-01
Chr08	irgsp1_rep	CDS	24639158	24639490	.	+	0	Parent=Os08t0499200-01
Chr08	irgsp1_rep	CDS	24641342	24641744	.	+	0	Parent=Os08t0499200-01
Chr08	irgsp1_rep	CDS	24642030	24642224	.	+	2	Parent=Os08t0499200-01
Chr08	irgsp1_rep	CDS	24642626	24643080	.	+	2	Parent=Os08t0499200-01
Chr08	irgsp1_rep	CDS	24643160	24643264	.	+	0	Parent=Os08t0499200-01
Chr08	irgsp1_rep	CDS	24643361	24643591	.	+	0	Parent=Os08t0499200-01
Chr08	irgsp1_rep	CDS	24643699	24643923	.	+	0	Parent=Os08t0499200-01
Chr08	irgsp1_rep	CDS	24644133	24644365	.	+	0	Parent=Os08t0499200-01
Chr08	irgsp1_rep	CDS	24645141	24645213	.	+	1	Parent=Os08t0499200-01
Chr08	irgsp1_rep	three_prime_UTR	24645214	24645616	.	+	.	Parent=Os08t0499200-01
Chr08	irgsp1_rep	mRNA	24645111	24645371	.	-	.	ID=Os08t0499250-00;Name=Os08t0499250-00;Locus_id=Os08g0499250;Note=Hypothetical conserved gene.;Transcript_evidence=EU971673 (DDBJ);ORF_evidence=B6U358 (UniProt);TENOR=Os08t0499250-00;KEGG=Os08t0499250-00
Chr08	irgsp1_rep	five_prime_UTR	24645270	24645371	.	-	.	Parent=Os08t0499250-00
Chr08	irgsp1_rep	CDS	24645171	24645269	.	-	0	Parent=Os08t0499250-00
Chr08	irgsp1_rep	three_prime_UTR	24645111	24645170	.	-	.	Parent=Os08t0499250-00
Chr08	irgsp1_rep	mRNA	24645932	24649832	.	-	.	ID=Os08t0499300-01;Name=Os08t0499300-01;Locus_id=Os08g0499300;RAP-DB Gene Symbol Synonym(s)=OsWRKY30;CGSNL Gene Symbol=WRKY30;CGSNL Gene Name=WRKY GENE 30;Oryzabase Gene Symbol Synonym(s)=OsWRKY30;Oryzabase Gene Name Synonym(s)=Rice WRKY gene30;Note=WRKY transcription factor%2C Disease resistance against X. oryzae%2C Drought tolerance;Transcript_evidence=AK065518;ORF_evidence=Q6ZKN0;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA-binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=WRKY domain superfamily (IPR036576),WRKY domain (IPR003657);NIAS_FLcDNA=J013025I24;Manual Curation=October 13%2C 2020;Literature_PMID=27897241,22875749,Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6543;Expression=AK065518;TENOR=Os08t0499300-01;KEGG=Os08t0499300-01;Subcellular location=nucleus (GO:0005634)
Chr08	irgsp1_rep	five_prime_UTR	24649666	24649832	.	-	.	Parent=Os08t0499300-01
Chr08	irgsp1_rep	five_prime_UTR	24648815	24648840	.	-	.	Parent=Os08t0499300-01
Chr08	irgsp1_rep	CDS	24648383	24648814	.	-	0	Parent=Os08t0499300-01
Chr08	irgsp1_rep	CDS	24647951	24648112	.	-	0	Parent=Os08t0499300-01
Chr08	irgsp1_rep	CDS	24647043	24647785	.	-	0	Parent=Os08t0499300-01
Chr08	irgsp1_rep	CDS	24646770	24646955	.	-	1	Parent=Os08t0499300-01
Chr08	irgsp1_rep	CDS	24646066	24646567	.	-	1	Parent=Os08t0499300-01
Chr08	irgsp1_rep	three_prime_UTR	24645932	24646065	.	-	.	Parent=Os08t0499300-01
Chr08	irgsp1_rep	mRNA	24645932	24647506	.	-	.	ID=Os08t0499300-02;Name=Os08t0499300-02;Locus_id=Os08g0499300;CGSNL Gene Symbol=WRKY30;CGSNL Gene Name=WRKY GENE 30;Oryzabase Gene Symbol Synonym(s)=OsWRKY30;Oryzabase Gene Name Synonym(s)=Rice WRKY gene30;Note=Similar to WRKY transcription factor 42 (Fragment).;Transcript_evidence=AK062027 (DDBJ%2C Best hit);ORF_evidence=B2KJ82 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);NIAS_FLcDNA=001-043-G06;Oryzabase=6543;TENOR=Os08t0499300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	24647043	24647506	.	-	0	Parent=Os08t0499300-02
Chr08	irgsp1_rep	CDS	24646770	24646955	.	-	1	Parent=Os08t0499300-02
Chr08	irgsp1_rep	CDS	24646066	24646567	.	-	1	Parent=Os08t0499300-02
Chr08	irgsp1_rep	three_prime_UTR	24645932	24646065	.	-	.	Parent=Os08t0499300-02
Chr08	irgsp1_rep	mRNA	24657079	24658340	.	+	.	ID=Os08t0499400-01;Name=Os08t0499400-01;Locus_id=Os08g0499400;Note=Conserved hypothetical protein.;Transcript_evidence=AK241142 (DDBJ%2C Best hit);ORF_evidence=NP_001175641.1 (RefSeq);NIAS_FLcDNA=J065110A07;TENOR=Os08t0499400-01;KEGG=Os08t0499400-01
Chr08	irgsp1_rep	five_prime_UTR	24657079	24657110	.	+	.	Parent=Os08t0499400-01
Chr08	irgsp1_rep	CDS	24657111	24658271	.	+	0	Parent=Os08t0499400-01
Chr08	irgsp1_rep	three_prime_UTR	24658272	24658340	.	+	.	Parent=Os08t0499400-01
Chr08	irgsp1_rep	mRNA	24661243	24665407	.	-	.	ID=Os08t0499532-01;Name=Os08t0499532-01;Locus_id=Os08g0499532;Note=Hypothetical protein.;Transcript_evidence=AK241495 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J065167G07;TENOR=Os08t0499532-01;KEGG=Os08t0499532-01
Chr08	irgsp1_rep	five_prime_UTR	24664264	24665407	.	-	.	Parent=Os08t0499532-01
Chr08	irgsp1_rep	five_prime_UTR	24664018	24664093	.	-	.	Parent=Os08t0499532-01
Chr08	irgsp1_rep	five_prime_UTR	24663311	24663431	.	-	.	Parent=Os08t0499532-01
Chr08	irgsp1_rep	five_prime_UTR	24661825	24662618	.	-	.	Parent=Os08t0499532-01
Chr08	irgsp1_rep	five_prime_UTR	24661729	24661730	.	-	.	Parent=Os08t0499532-01
Chr08	irgsp1_rep	CDS	24661519	24661728	.	-	0	Parent=Os08t0499532-01
Chr08	irgsp1_rep	three_prime_UTR	24661243	24661518	.	-	.	Parent=Os08t0499532-01
Chr08	irgsp1_rep	mRNA	24665808	24671276	.	+	.	ID=Os08t0499700-01;Name=Os08t0499700-01;Locus_id=Os08g0499700;Note=Conserved hypothetical protein.;Transcript_evidence=AK119271 (DDBJ%2C Best hit);ORF_evidence=B9G1M7 (UniProt);NIAS_FLcDNA=001-130-A11;TENOR=Os08t0499700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	24665808	24667052	.	+	.	Parent=Os08t0499700-01
Chr08	irgsp1_rep	five_prime_UTR	24668277	24668370	.	+	.	Parent=Os08t0499700-01
Chr08	irgsp1_rep	five_prime_UTR	24668501	24669029	.	+	.	Parent=Os08t0499700-01
Chr08	irgsp1_rep	CDS	24669030	24669185	.	+	0	Parent=Os08t0499700-01
Chr08	irgsp1_rep	CDS	24669917	24670564	.	+	0	Parent=Os08t0499700-01
Chr08	irgsp1_rep	three_prime_UTR	24670565	24671276	.	+	.	Parent=Os08t0499700-01
Chr08	irgsp1_rep	mRNA	24665833	24668437	.	+	.	ID=Os08t0499700-02;Name=Os08t0499700-02;Locus_id=Os08g0499700;Note=Conserved hypothetical protein.;Transcript_evidence=AK109726 (DDBJ%2C Best hit);ORF_evidence=A2YWP1 (UniProt);NIAS_FLcDNA=002-146-B08;TENOR=Os08t0499700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	24665833	24666346	.	+	.	Parent=Os08t0499700-02
Chr08	irgsp1_rep	CDS	24666347	24666682	.	+	0	Parent=Os08t0499700-02
Chr08	irgsp1_rep	three_prime_UTR	24666683	24667052	.	+	.	Parent=Os08t0499700-02
Chr08	irgsp1_rep	three_prime_UTR	24668277	24668437	.	+	.	Parent=Os08t0499700-02
Chr08	irgsp1_rep	mRNA	24673130	24676283	.	+	.	ID=Os08t0499800-01;Name=Os08t0499800-01;Locus_id=Os08g0499800;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK102014 (DDBJ%2C Best hit);ORF_evidence=Q2L3A2 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J033080D22;Expression=AK102014;TENOR=Os08t0499800-01;KEGG=Os08t0499800-01
Chr08	irgsp1_rep	five_prime_UTR	24673130	24673308	.	+	.	Parent=Os08t0499800-01
Chr08	irgsp1_rep	CDS	24673309	24674640	.	+	0	Parent=Os08t0499800-01
Chr08	irgsp1_rep	three_prime_UTR	24674641	24674696	.	+	.	Parent=Os08t0499800-01
Chr08	irgsp1_rep	three_prime_UTR	24675603	24675759	.	+	.	Parent=Os08t0499800-01
Chr08	irgsp1_rep	three_prime_UTR	24676131	24676283	.	+	.	Parent=Os08t0499800-01
Chr08	irgsp1_rep	mRNA	24677583	24680367	.	+	.	ID=Os08t0499900-01;Name=Os08t0499900-01;Locus_id=Os08g0499900;Oryzabase Gene Symbol Synonym(s)=Os_F0779;Note=Conserved hypothetical protein.;Transcript_evidence=AK099866 (DDBJ%2C Best hit);ORF_evidence=B9G1M8 (UniProt);NIAS_FLcDNA=J013111E08;Oryzabase=17527;TENOR=Os08t0499900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	24677583	24677621	.	+	.	Parent=Os08t0499900-01
Chr08	irgsp1_rep	CDS	24677622	24677849	.	+	0	Parent=Os08t0499900-01
Chr08	irgsp1_rep	CDS	24677965	24678170	.	+	0	Parent=Os08t0499900-01
Chr08	irgsp1_rep	CDS	24678453	24678576	.	+	1	Parent=Os08t0499900-01
Chr08	irgsp1_rep	three_prime_UTR	24678577	24680367	.	+	.	Parent=Os08t0499900-01
Chr08	irgsp1_rep	mRNA	24681236	24684529	.	-	.	ID=Os08t0500000-01;Name=Os08t0500000-01;Locus_id=Os08g0500000;RAP-DB Gene Symbol Synonym(s)=CSN6;RAP-DB Gene Name Synonym(s)=Mov34 homolog%2C COP9 signalosome 6;CGSNL Gene Symbol=CSN6;CGSNL Gene Name=COP9 SIGNALOSOME SUBUNIT 6;Oryzabase Gene Symbol Synonym(s)=OsCSN6;Oryzabase Gene Name Synonym(s)=Mov34 homolog%2C COP9 signalosome subunit 6;Note=Subunit of the COP9 signalosome%2C Early response to iron deficiency;Transcript_evidence=AM234671,AK058215;ORF_evidence=Q2A0N7;GO=Molecular Function: protein binding (GO:0005515);InterPro=JAB1/MPN/MOV34 metalloenzyme domain (IPR000555),Rpn11/EIF3F%2C C-terminal (IPR024969);NIAS_FLcDNA=001-010-D12;Manual Curation=May 11%2C 2016;Literature_PMID=27137867;Oryzabase=15772;Expression=AK058215;TENOR=Os08t0500000-01;KEGG=Os08t0500000-01
Chr08	irgsp1_rep	five_prime_UTR	24684437	24684529	.	-	.	Parent=Os08t0500000-01
Chr08	irgsp1_rep	CDS	24684106	24684436	.	-	0	Parent=Os08t0500000-01
Chr08	irgsp1_rep	CDS	24683916	24684004	.	-	2	Parent=Os08t0500000-01
Chr08	irgsp1_rep	CDS	24683099	24683192	.	-	0	Parent=Os08t0500000-01
Chr08	irgsp1_rep	CDS	24682660	24682721	.	-	2	Parent=Os08t0500000-01
Chr08	irgsp1_rep	CDS	24682501	24682579	.	-	0	Parent=Os08t0500000-01
Chr08	irgsp1_rep	CDS	24682305	24682397	.	-	2	Parent=Os08t0500000-01
Chr08	irgsp1_rep	CDS	24682073	24682173	.	-	2	Parent=Os08t0500000-01
Chr08	irgsp1_rep	CDS	24681933	24681988	.	-	0	Parent=Os08t0500000-01
Chr08	irgsp1_rep	CDS	24681561	24681645	.	-	1	Parent=Os08t0500000-01
Chr08	irgsp1_rep	three_prime_UTR	24681236	24681560	.	-	.	Parent=Os08t0500000-01
Chr08	irgsp1_rep	mRNA	24685286	24694485	.	+	.	ID=Os08t0500100-01;Name=Os08t0500100-01;Locus_id=Os08g0500100;RAP-DB Gene Symbol Synonym(s)=OsPEX5%2C OsPEX5S%2C OsPex5pS%2C DFO2;RAP-DB Gene Name Synonym(s)=deformed floral organ 2;CGSNL Gene Symbol=PEX5;CGSNL Gene Name=PEROXIN 5;Oryzabase Gene Symbol Synonym(s)=OsPEX5%2C OsPex5pL%2C OsPex5pS%2C OsPex5L%2C OsPex5S%2C OsPex5p;Oryzabase Gene Name Synonym(s)=peroxin 5%2C PEROXISOMAL RECEPTOR PROTEIN 5;Note=Peroxisomal targeting sequence1 (PTS1) receptor protein%2C Type I peroxisomal targeting signal (PTS1) receptor%2C Regulation of spikelet development%2C Modulation of jasmonic acid biosynthesis%2C Antifungal activity;Transcript_evidence=AK064832;ORF_evidence=Q6ZKM1;GO=Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical domain superfamily (IPR011990),Tetratricopeptide repeat-containing domain (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J013000F17;Manual Curation=July 5%2C 2019;Literature_PMID=31264225,17568562,16792693;Oryzabase=14187;Expression=AK064832;TENOR=Os08t0500100-01;KEGG=Os08t0500100-01;Subcellular location=cytoplasm (GO:0005737), peroxisome (GO:0005777)
Chr08	irgsp1_rep	five_prime_UTR	24685286	24685383	.	+	.	Parent=Os08t0500100-01
Chr08	irgsp1_rep	CDS	24685384	24685500	.	+	0	Parent=Os08t0500100-01
Chr08	irgsp1_rep	CDS	24687116	24687244	.	+	0	Parent=Os08t0500100-01
Chr08	irgsp1_rep	CDS	24687315	24687471	.	+	0	Parent=Os08t0500100-01
Chr08	irgsp1_rep	CDS	24687579	24687772	.	+	2	Parent=Os08t0500100-01
Chr08	irgsp1_rep	CDS	24687910	24688158	.	+	0	Parent=Os08t0500100-01
Chr08	irgsp1_rep	CDS	24688438	24688551	.	+	0	Parent=Os08t0500100-01
Chr08	irgsp1_rep	CDS	24690174	24690346	.	+	0	Parent=Os08t0500100-01
Chr08	irgsp1_rep	CDS	24690620	24690866	.	+	1	Parent=Os08t0500100-01
Chr08	irgsp1_rep	CDS	24691288	24691372	.	+	0	Parent=Os08t0500100-01
Chr08	irgsp1_rep	CDS	24691643	24691752	.	+	2	Parent=Os08t0500100-01
Chr08	irgsp1_rep	CDS	24691995	24692219	.	+	0	Parent=Os08t0500100-01
Chr08	irgsp1_rep	CDS	24693127	24693192	.	+	0	Parent=Os08t0500100-01
Chr08	irgsp1_rep	CDS	24693673	24693767	.	+	0	Parent=Os08t0500100-01
Chr08	irgsp1_rep	CDS	24694022	24694100	.	+	1	Parent=Os08t0500100-01
Chr08	irgsp1_rep	three_prime_UTR	24694101	24694485	.	+	.	Parent=Os08t0500100-01
Chr08	irgsp1_rep	mRNA	24685288	24694485	.	+	.	ID=Os08t0500100-02;Name=Os08t0500100-02;Locus_id=Os08g0500100;RAP-DB Gene Symbol Synonym(s)=OsPEX5%2C OsPEX5L%2C OsPex5pL%2C DFO2;RAP-DB Gene Name Synonym(s)=deformed floral organ 2;CGSNL Gene Symbol=PEX5;CGSNL Gene Name=PEROXIN 5;Oryzabase Gene Symbol Synonym(s)=OsPEX5%2C OsPex5pL%2C OsPex5pS%2C OsPex5L%2C OsPex5S%2C OsPex5p;Oryzabase Gene Name Synonym(s)=peroxin 5%2C PEROXISOMAL RECEPTOR PROTEIN 5;Note=Peroxisomal targeting sequence1 (PTS1) receptor protein%2C Type I peroxisomal targeting signal (PTS1) receptor%2C Regulation of spikelet development%2C Modulation of jasmonic acid biosynthesis%2C Antifungal activity;Transcript_evidence=AK065120;ORF_evidence=Q6ZKM0;GO=Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical domain superfamily (IPR011990),Tetratricopeptide repeat-containing domain (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J013001O15;Manual Curation=July 5%2C 2019;Literature_PMID=31264225,17568562,16792693;Oryzabase=14187;Expression=AK065120;TENOR=Os08t0500100-02;Subcellular location=cytoplasm (GO:0005737), peroxisome (GO:0005777)
Chr08	irgsp1_rep	five_prime_UTR	24685288	24685383	.	+	.	Parent=Os08t0500100-02
Chr08	irgsp1_rep	CDS	24685384	24685500	.	+	0	Parent=Os08t0500100-02
Chr08	irgsp1_rep	CDS	24687116	24687244	.	+	0	Parent=Os08t0500100-02
Chr08	irgsp1_rep	CDS	24687315	24687471	.	+	0	Parent=Os08t0500100-02
Chr08	irgsp1_rep	CDS	24687579	24687772	.	+	2	Parent=Os08t0500100-02
Chr08	irgsp1_rep	CDS	24687910	24688158	.	+	0	Parent=Os08t0500100-02
Chr08	irgsp1_rep	CDS	24688438	24688551	.	+	0	Parent=Os08t0500100-02
Chr08	irgsp1_rep	CDS	24689644	24689814	.	+	0	Parent=Os08t0500100-02
Chr08	irgsp1_rep	CDS	24690174	24690346	.	+	0	Parent=Os08t0500100-02
Chr08	irgsp1_rep	CDS	24690620	24690866	.	+	1	Parent=Os08t0500100-02
Chr08	irgsp1_rep	CDS	24691288	24691372	.	+	0	Parent=Os08t0500100-02
Chr08	irgsp1_rep	CDS	24691643	24691752	.	+	2	Parent=Os08t0500100-02
Chr08	irgsp1_rep	CDS	24691995	24692219	.	+	0	Parent=Os08t0500100-02
Chr08	irgsp1_rep	CDS	24693127	24693192	.	+	0	Parent=Os08t0500100-02
Chr08	irgsp1_rep	CDS	24693673	24693767	.	+	0	Parent=Os08t0500100-02
Chr08	irgsp1_rep	CDS	24694022	24694100	.	+	1	Parent=Os08t0500100-02
Chr08	irgsp1_rep	three_prime_UTR	24694101	24694485	.	+	.	Parent=Os08t0500100-02
Chr08	irgsp1_rep	mRNA	24695687	24698899	.	-	.	ID=Os08t0500200-01;Name=Os08t0500200-01;Locus_id=Os08g0500200;Note=CBF1-interacting co-repressor CIR%2C N-terminal domain containing protein.;Transcript_evidence=AK064018 (DDBJ%2C Best hit);ORF_evidence=A2YWP7 (UniProt);InterPro=CBF1-interacting co-repressor CIR%2C N-terminal (IPR019339),Pre-mRNA splicing factor (IPR022209);NIAS_FLcDNA=001-124-H11;Expression=AK064018;TENOR=Os08t0500200-01;KEGG=Os08t0500200-01
Chr08	irgsp1_rep	five_prime_UTR	24698732	24698899	.	-	.	Parent=Os08t0500200-01
Chr08	irgsp1_rep	CDS	24698544	24698731	.	-	0	Parent=Os08t0500200-01
Chr08	irgsp1_rep	CDS	24697955	24698102	.	-	1	Parent=Os08t0500200-01
Chr08	irgsp1_rep	CDS	24697117	24697278	.	-	0	Parent=Os08t0500200-01
Chr08	irgsp1_rep	CDS	24695928	24696971	.	-	0	Parent=Os08t0500200-01
Chr08	irgsp1_rep	three_prime_UTR	24695687	24695927	.	-	.	Parent=Os08t0500200-01
Chr08	irgsp1_rep	mRNA	24697115	24698899	.	-	.	ID=Os08t0500200-02;Name=Os08t0500200-02;Locus_id=Os08g0500200;Note=Similar to predicted protein.;Transcript_evidence=AK059046 (DDBJ%2C Best hit);ORF_evidence=A2YWP7 (UniProt);InterPro=CBF1-interacting co-repressor CIR%2C N-terminal (IPR019339),Pre-mRNA splicing factor (IPR022209);NIAS_FLcDNA=001-021-D09;TENOR=Os08t0500200-02
Chr08	irgsp1_rep	five_prime_UTR	24698732	24698899	.	-	.	Parent=Os08t0500200-02
Chr08	irgsp1_rep	CDS	24698544	24698731	.	-	0	Parent=Os08t0500200-02
Chr08	irgsp1_rep	CDS	24697955	24698102	.	-	1	Parent=Os08t0500200-02
Chr08	irgsp1_rep	CDS	24697115	24697278	.	-	0	Parent=Os08t0500200-02
Chr08	irgsp1_rep	mRNA	24700142	24704612	.	-	.	ID=Os08t0500300-01;Name=Os08t0500300-01;Locus_id=Os08g0500300;Oryzabase Gene Symbol Synonym(s)=OsPP2C66%2C PP2C66%2C OsPP102;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C66%2C protein phosphatase 2C 66%2C protein phosphatase 102;Note=Protein phosphatase 2C domain containing protein.;Transcript_evidence=AK073076 (DDBJ%2C Best hit),AK100141 (DDBJ%2C Best hit);ORF_evidence=B6U7X6 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J033010D24,J023011B13;Oryzabase=17939;Expression=AK073076;TENOR=Os08t0500300-01;KEGG=Os08t0500300-01
Chr08	irgsp1_rep	five_prime_UTR	24704567	24704612	.	-	.	Parent=Os08t0500300-01
Chr08	irgsp1_rep	CDS	24704240	24704566	.	-	0	Parent=Os08t0500300-01
Chr08	irgsp1_rep	CDS	24702003	24702374	.	-	0	Parent=Os08t0500300-01
Chr08	irgsp1_rep	CDS	24701761	24701878	.	-	0	Parent=Os08t0500300-01
Chr08	irgsp1_rep	CDS	24701334	24701557	.	-	2	Parent=Os08t0500300-01
Chr08	irgsp1_rep	CDS	24700565	24701119	.	-	0	Parent=Os08t0500300-01
Chr08	irgsp1_rep	three_prime_UTR	24700142	24700564	.	-	.	Parent=Os08t0500300-01
Chr08	irgsp1_rep	mRNA	24704216	24704803	.	+	.	ID=Os08t0500400-01;Name=Os08t0500400-01;Locus_id=Os08g0500400;Note=Hypothetical protein.;Transcript_evidence=AK111024 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-174-H02;Expression=AK111024;TENOR=Os08t0500400-01;KEGG=Os08t0500400-01
Chr08	irgsp1_rep	five_prime_UTR	24704216	24704222	.	+	.	Parent=Os08t0500400-01
Chr08	irgsp1_rep	CDS	24704223	24704633	.	+	0	Parent=Os08t0500400-01
Chr08	irgsp1_rep	three_prime_UTR	24704634	24704803	.	+	.	Parent=Os08t0500400-01
Chr08	irgsp1_rep	mRNA	24712558	24715643	.	+	.	ID=Os08t0500500-01;Name=Os08t0500500-01;Locus_id=Os08g0500500;Note=Conserved hypothetical protein.;Transcript_evidence=AK068508 (DDBJ%2C Best hit);ORF_evidence=B9G1N1 (UniProt);NIAS_FLcDNA=J013152N15;Expression=AK068508;TENOR=Os08t0500500-01;KEGG=Os08t0500500-01
Chr08	irgsp1_rep	five_prime_UTR	24712558	24712705	.	+	.	Parent=Os08t0500500-01
Chr08	irgsp1_rep	five_prime_UTR	24713565	24713670	.	+	.	Parent=Os08t0500500-01
Chr08	irgsp1_rep	CDS	24713671	24715347	.	+	0	Parent=Os08t0500500-01
Chr08	irgsp1_rep	three_prime_UTR	24715348	24715643	.	+	.	Parent=Os08t0500500-01
Chr08	irgsp1_rep	mRNA	24716340	24718126	.	+	.	ID=Os08t0500600-01;Name=Os08t0500600-01;Locus_id=Os08g0500600;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK103480 (DDBJ%2C Best hit);ORF_evidence=A2YWQ0 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033130G01;TENOR=Os08t0500600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	24716340	24718016	.	+	0	Parent=Os08t0500600-01
Chr08	irgsp1_rep	three_prime_UTR	24718017	24718126	.	+	.	Parent=Os08t0500600-01
Chr08	irgsp1_rep	mRNA	24719203	24723184	.	-	.	ID=Os08t0500700-01;Name=Os08t0500700-01;Locus_id=Os08g0500700;CGSNL Gene Symbol=HSP82A;CGSNL Gene Name=HEAT SHOCK PROTEIN 82A;Oryzabase Gene Symbol Synonym(s)=OsHSP82A%2C hsp82A%2C HSP90%2C OsHSP81%2C HSP81;Oryzabase Gene Name Synonym(s)=Heat shock protein 82A;Note=Similar to Heat shock protein 82.;Transcript_evidence=AK102426 (DDBJ%2C Best hit);ORF_evidence=E0X6U7 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: response to stress (GO:0006950),Molecular Function: ATP binding (GO:0005524),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein Hsp90 (IPR001404),ATPase-like%2C ATP-binding domain (IPR003594),Ribosomal protein S5 domain 2-type fold (IPR020568),Heat shock protein Hsp90%2C N-terminal (IPR020575);NIAS_FLcDNA=J033093F17;Oryzabase=14443;Expression=AK102426;TENOR=Os08t0500700-01;KEGG=Os08t0500700-01
Chr08	irgsp1_rep	five_prime_UTR	24722363	24723184	.	-	.	Parent=Os08t0500700-01
Chr08	irgsp1_rep	CDS	24721829	24722362	.	-	0	Parent=Os08t0500700-01
Chr08	irgsp1_rep	CDS	24719442	24720992	.	-	0	Parent=Os08t0500700-01
Chr08	irgsp1_rep	three_prime_UTR	24719203	24719441	.	-	.	Parent=Os08t0500700-01
Chr08	irgsp1_rep	mRNA	24726948	24731218	.	+	.	ID=Os08t0500800-01;Name=Os08t0500800-01;Locus_id=Os08g0500800;Note=WLM domain containing protein.;Transcript_evidence=AK101328 (DDBJ%2C Best hit);ORF_evidence=B8BC55 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=PUG domain (IPR006567),WLM (IPR013536),PUB domain (IPR018997);NIAS_FLcDNA=J033034G12;Expression=AK101328;TENOR=Os08t0500800-01;KEGG=Os08t0500800-01
Chr08	irgsp1_rep	five_prime_UTR	24726948	24727283	.	+	.	Parent=Os08t0500800-01
Chr08	irgsp1_rep	five_prime_UTR	24727632	24727638	.	+	.	Parent=Os08t0500800-01
Chr08	irgsp1_rep	CDS	24727639	24727878	.	+	0	Parent=Os08t0500800-01
Chr08	irgsp1_rep	CDS	24727981	24728193	.	+	0	Parent=Os08t0500800-01
Chr08	irgsp1_rep	CDS	24728859	24728939	.	+	0	Parent=Os08t0500800-01
Chr08	irgsp1_rep	CDS	24729023	24729109	.	+	0	Parent=Os08t0500800-01
Chr08	irgsp1_rep	CDS	24729212	24729307	.	+	0	Parent=Os08t0500800-01
Chr08	irgsp1_rep	CDS	24729421	24729474	.	+	0	Parent=Os08t0500800-01
Chr08	irgsp1_rep	CDS	24729568	24730617	.	+	0	Parent=Os08t0500800-01
Chr08	irgsp1_rep	CDS	24730710	24730749	.	+	0	Parent=Os08t0500800-01
Chr08	irgsp1_rep	CDS	24730850	24730998	.	+	2	Parent=Os08t0500800-01
Chr08	irgsp1_rep	three_prime_UTR	24730999	24731218	.	+	.	Parent=Os08t0500800-01
Chr08	irgsp1_rep	mRNA	24731592	24734103	.	+	.	ID=Os08t0500900-01;Name=Os08t0500900-01;Locus_id=Os08g0500900;CGSNL Gene Symbol=GART;CGSNL Gene Name=GAR FORMYL TRANSFERASE;Oryzabase Gene Symbol Synonym(s)=OsGART;Oryzabase Gene Name Synonym(s)=GAR formyl transferase;Note=Similar to Phosphoribosylglycinamide formyltransferase%2C chloroplast precursor (EC 2.1.2.2) (GART) (GAR transformylase) (5'-phosphoribosylglycinamide transformylase).;Transcript_evidence=AK102314 (DDBJ%2C Best hit);ORF_evidence=XP_002334132.1 (RefSeq);GO=Biological Process: 'de novo' IMP biosynthetic process (GO:0006189),Biological Process: biosynthetic process (GO:0009058),Molecular Function: phosphoribosylglycinamide formyltransferase activity (GO:0004644),Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: hydroxymethyl-%2C formyl- and related transferase activity (GO:0016742);InterPro=Phosphoribosylglycinamide formyltransferase%2C active site (IPR001555),Formyl transferase%2C N-terminal (IPR002376),Phosphoribosylglycinamide formyltransferase (IPR004607);NIAS_FLcDNA=J033090F02;Oryzabase=22924;Expression=AK102314;TENOR=Os08t0500900-01;KEGG=Os08t0500900-01 (EC:2.1.2.2)
Chr08	irgsp1_rep	five_prime_UTR	24731592	24731710	.	+	.	Parent=Os08t0500900-01
Chr08	irgsp1_rep	CDS	24731711	24732053	.	+	0	Parent=Os08t0500900-01
Chr08	irgsp1_rep	CDS	24732152	24732263	.	+	2	Parent=Os08t0500900-01
Chr08	irgsp1_rep	CDS	24732903	24733079	.	+	1	Parent=Os08t0500900-01
Chr08	irgsp1_rep	CDS	24733288	24733414	.	+	1	Parent=Os08t0500900-01
Chr08	irgsp1_rep	CDS	24733537	24733650	.	+	0	Parent=Os08t0500900-01
Chr08	irgsp1_rep	three_prime_UTR	24733651	24734103	.	+	.	Parent=Os08t0500900-01
Chr08	irgsp1_rep	mRNA	24734910	24738361	.	-	.	ID=Os08t0501000-00;Name=Os08t0501000-00;Locus_id=Os08g0501000;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001062162.2 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os08t0501000-00;KEGG=Os08t0501000-00
Chr08	irgsp1_rep	CDS	24737458	24738361	.	-	0	Parent=Os08t0501000-00
Chr08	irgsp1_rep	CDS	24735745	24736116	.	-	2	Parent=Os08t0501000-00
Chr08	irgsp1_rep	CDS	24734910	24735664	.	-	2	Parent=Os08t0501000-00
Chr08	irgsp1_rep	mRNA	24735078	24735536	.	+	.	ID=Os08t0501044-00;Name=Os08t0501044-00;Locus_id=Os08g0501044;Note=Non-protein coding transcript.;Transcript_evidence=FP093119 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0501044-00
Chr08	irgsp1_rep	exon	24735078	24735536	.	+	.	Parent=Os08t0501044-00
Chr08	irgsp1_rep	mRNA	24747842	24748547	.	-	.	ID=Os08t0501088-00;Name=Os08t0501088-00;Locus_id=Os08g0501088;Note=Similar to J013100G02%2C full insert sequence.;Transcript_evidence=EU976182 (DDBJ);ORF_evidence=B7EDE1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os08t0501088-00
Chr08	irgsp1_rep	five_prime_UTR	24748406	24748547	.	-	.	Parent=Os08t0501088-00
Chr08	irgsp1_rep	CDS	24748118	24748405	.	-	0	Parent=Os08t0501088-00
Chr08	irgsp1_rep	three_prime_UTR	24747842	24748117	.	-	.	Parent=Os08t0501088-00
Chr08	irgsp1_rep	mRNA	24748442	24749814	.	+	.	ID=Os08t0501132-00;Name=Os08t0501132-00;Locus_id=Os08g0501132;Note=Similar to glycinamide ribonucleotide transformylase.;Transcript_evidence=BT009632 (DDBJ);ORF_evidence=XP_002334132.1 (RefSeq);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: hydroxymethyl-%2C formyl- and related transferase activity (GO:0016742);InterPro=Formyl transferase%2C N-terminal (IPR002376);TENOR=Os08t0501132-00;KEGG=Os08t0501132-00 (EC:2.1.2.2%2C EC:6.3.3.1%2C EC:6.3.4.13)
Chr08	irgsp1_rep	CDS	24748442	24748674	.	+	0	Parent=Os08t0501132-00
Chr08	irgsp1_rep	CDS	24749334	24749510	.	+	1	Parent=Os08t0501132-00
Chr08	irgsp1_rep	CDS	24749664	24749814	.	+	1	Parent=Os08t0501132-00
Chr08	irgsp1_rep	mRNA	24750050	24754844	.	-	.	ID=Os08t0501200-00;Name=Os08t0501200-00;Locus_id=Os08g0501200;CGSNL Gene Symbol=WAK73;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 73;Oryzabase Gene Symbol Synonym(s)=OsWAK73;Note=EGF-type aspartate/asparagine hydroxylation site domain containing protein.;Transcript_evidence=AK367533 (DDBJ);ORF_evidence=Q6ZK10 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=EGF-type aspartate/asparagine hydroxylation site (IPR000152),Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),EGF-like calcium-binding (IPR001881),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),EGF-like calcium-binding%2C conserved site (IPR018097),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=6963;TENOR=Os08t0501200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	24753983	24754844	.	-	0	Parent=Os08t0501200-00
Chr08	irgsp1_rep	CDS	24751428	24751568	.	-	2	Parent=Os08t0501200-00
Chr08	irgsp1_rep	CDS	24750054	24751261	.	-	2	Parent=Os08t0501200-00
Chr08	irgsp1_rep	three_prime_UTR	24750050	24750053	.	-	.	Parent=Os08t0501200-00
Chr08	irgsp1_rep	mRNA	24762330	24762913	.	+	.	ID=Os08t0501300-01;Name=Os08t0501300-01;Locus_id=Os08g0501300;Note=Conserved hypothetical protein.;Transcript_evidence=AK108263 (DDBJ%2C Best hit);ORF_evidence=B8BC58 (UniProt);NIAS_FLcDNA=002-141-B07;Expression=AK108263;TENOR=Os08t0501300-01;KEGG=Os08t0501300-01
Chr08	irgsp1_rep	five_prime_UTR	24762330	24762396	.	+	.	Parent=Os08t0501300-01
Chr08	irgsp1_rep	CDS	24762397	24762723	.	+	0	Parent=Os08t0501300-01
Chr08	irgsp1_rep	three_prime_UTR	24762724	24762913	.	+	.	Parent=Os08t0501300-01
Chr08	irgsp1_rep	mRNA	24767565	24771071	.	-	.	ID=Os08t0501500-00;Name=Os08t0501500-00;Locus_id=Os08g0501500;Note=EGF-type aspartate/asparagine hydroxylation site domain containing protein.;Transcript_evidence=AK367533 (DDBJ);ORF_evidence=NP_001062164.2 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=EGF-type aspartate/asparagine hydroxylation site (IPR000152),Protein kinase%2C catalytic domain (IPR000719),Epidermal growth factor-like%2C type 3 (IPR000742),EGF-like calcium-binding (IPR001881),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EGF-like calcium-binding%2C conserved site (IPR018097),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os08t0501500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	24770909	24771071	.	-	.	Parent=Os08t0501500-00
Chr08	irgsp1_rep	CDS	24769999	24770908	.	-	0	Parent=Os08t0501500-00
Chr08	irgsp1_rep	CDS	24769698	24769847	.	-	2	Parent=Os08t0501500-00
Chr08	irgsp1_rep	CDS	24767574	24768772	.	-	2	Parent=Os08t0501500-00
Chr08	irgsp1_rep	three_prime_UTR	24767565	24767573	.	-	.	Parent=Os08t0501500-00
Chr08	irgsp1_rep	mRNA	24774507	24775745	.	+	.	ID=Os08t0501600-00;Name=Os08t0501600-00;Locus_id=Os08g0501600;Note=Similar to Wall associated kinase.;Transcript_evidence=DQ177499 (DDBJ);ORF_evidence=Q2L3D5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os08t0501600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	24774507	24774512	.	+	.	Parent=Os08t0501600-00
Chr08	irgsp1_rep	CDS	24774513	24775745	.	+	0	Parent=Os08t0501600-00
Chr08	irgsp1_rep	mRNA	24780310	24785986	.	+	.	ID=Os08t0501700-01;Name=Os08t0501700-01;Locus_id=Os08g0501700;CGSNL Gene Symbol=WAK76;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 76;Oryzabase Gene Symbol Synonym(s)=OsWAK76;Note=Conserved hypothetical protein.;Transcript_evidence=AK067363 (DDBJ%2C Best hit);ORF_evidence=B8BCD4 (UniProt);NIAS_FLcDNA=J013100G02;Oryzabase=6966;TENOR=Os08t0501700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	24780310	24780569	.	+	.	Parent=Os08t0501700-01
Chr08	irgsp1_rep	CDS	24780570	24781301	.	+	0	Parent=Os08t0501700-01
Chr08	irgsp1_rep	three_prime_UTR	24781302	24782800	.	+	.	Parent=Os08t0501700-01
Chr08	irgsp1_rep	three_prime_UTR	24783322	24783462	.	+	.	Parent=Os08t0501700-01
Chr08	irgsp1_rep	three_prime_UTR	24784635	24785986	.	+	.	Parent=Os08t0501700-01
Chr08	irgsp1_rep	mRNA	24791481	24791716	.	+	.	ID=Os08t0501800-00;Name=Os08t0501800-00;Locus_id=Os08g0501800;Note=Non-protein coding transcript.;Transcript_evidence=EU955321 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0501800-00
Chr08	irgsp1_rep	exon	24791481	24791716	.	+	.	Parent=Os08t0501800-00
Chr08	irgsp1_rep	mRNA	24795776	24796407	.	-	.	ID=Os08t0501900-01;Name=Os08t0501900-01;Locus_id=Os08g0501900;Note=Non-protein coding transcript.;Transcript_evidence=AK063130 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-111-F06;TENOR=Os08t0501900-01
Chr08	irgsp1_rep	exon	24795776	24796407	.	-	.	Parent=Os08t0501900-01
Chr08	irgsp1_rep	mRNA	24800577	24807038	.	-	.	ID=Os08t0502000-01;Name=Os08t0502000-01;Locus_id=Os08g0502000;Note=Conserved hypothetical protein.;Transcript_evidence=AK105263 (DDBJ%2C Best hit);ORF_evidence=B9G1N5 (UniProt);NIAS_FLcDNA=001-115-C12;TENOR=Os08t0502000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	24806983	24807038	.	-	0	Parent=Os08t0502000-01
Chr08	irgsp1_rep	CDS	24806543	24806893	.	-	1	Parent=Os08t0502000-01
Chr08	irgsp1_rep	CDS	24805602	24805743	.	-	1	Parent=Os08t0502000-01
Chr08	irgsp1_rep	CDS	24805432	24805533	.	-	0	Parent=Os08t0502000-01
Chr08	irgsp1_rep	CDS	24805048	24805140	.	-	0	Parent=Os08t0502000-01
Chr08	irgsp1_rep	CDS	24803607	24803648	.	-	0	Parent=Os08t0502000-01
Chr08	irgsp1_rep	CDS	24802744	24802854	.	-	0	Parent=Os08t0502000-01
Chr08	irgsp1_rep	CDS	24802474	24802545	.	-	0	Parent=Os08t0502000-01
Chr08	irgsp1_rep	CDS	24802270	24802388	.	-	0	Parent=Os08t0502000-01
Chr08	irgsp1_rep	CDS	24802130	24802193	.	-	1	Parent=Os08t0502000-01
Chr08	irgsp1_rep	CDS	24800950	24802038	.	-	0	Parent=Os08t0502000-01
Chr08	irgsp1_rep	three_prime_UTR	24800577	24800949	.	-	.	Parent=Os08t0502000-01
Chr08	irgsp1_rep	mRNA	24800784	24801895	.	+	.	ID=Os08t0502101-01;Name=Os08t0502101-01;Locus_id=Os08g0502101;Note=Conserved hypothetical protein.;Transcript_evidence=AK241735 (DDBJ%2C Best hit);ORF_evidence=NP_001175644.1 (RefSeq);NIAS_FLcDNA=J065200J20;TENOR=Os08t0502101-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	24800784	24801107	.	+	.	Parent=Os08t0502101-01
Chr08	irgsp1_rep	CDS	24801108	24801329	.	+	0	Parent=Os08t0502101-01
Chr08	irgsp1_rep	CDS	24801399	24801410	.	+	0	Parent=Os08t0502101-01
Chr08	irgsp1_rep	three_prime_UTR	24801411	24801895	.	+	.	Parent=Os08t0502101-01
Chr08	irgsp1_rep	mRNA	24818381	24820324	.	-	.	ID=Os08t0502400-01;Name=Os08t0502400-01;Locus_id=Os08g0502400;CGSNL Gene Symbol=FLA5;CGSNL Gene Name=FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 5;Oryzabase Gene Symbol Synonym(s)=OsFLA5;Oryzabase Gene Name Synonym(s)=fasciclin-like AGP 5%2C fasciclin-like arabinogalactan protein 5;Note=FAS1 domain domain containing protein.;Transcript_evidence=AK106964 (DDBJ%2C Best hit);ORF_evidence=Q06I96 (UniProt);InterPro=FAS1 domain (IPR000782);NIAS_FLcDNA=002-119-F09;Oryzabase=11340;Expression=AK106964;TENOR=Os08t0502400-01;KEGG=Os08t0502400-01
Chr08	irgsp1_rep	five_prime_UTR	24820271	24820324	.	-	.	Parent=Os08t0502400-01
Chr08	irgsp1_rep	five_prime_UTR	24819394	24819404	.	-	.	Parent=Os08t0502400-01
Chr08	irgsp1_rep	CDS	24818569	24819393	.	-	0	Parent=Os08t0502400-01
Chr08	irgsp1_rep	three_prime_UTR	24818381	24818568	.	-	.	Parent=Os08t0502400-01
Chr08	irgsp1_rep	mRNA	24827219	24827794	.	+	.	ID=Os08t0502600-01;Name=Os08t0502600-01;Locus_id=Os08g0502600;Note=EF hand domain containing protein.;Transcript_evidence=AK107730 (DDBJ%2C Best hit);ORF_evidence=A2YWR5 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249);NIAS_FLcDNA=002-132-F07;Expression=AK107730;TENOR=Os08t0502600-01;KEGG=Os08t0502600-01
Chr08	irgsp1_rep	five_prime_UTR	24827219	24827280	.	+	.	Parent=Os08t0502600-01
Chr08	irgsp1_rep	CDS	24827281	24827688	.	+	0	Parent=Os08t0502600-01
Chr08	irgsp1_rep	three_prime_UTR	24827689	24827794	.	+	.	Parent=Os08t0502600-01
Chr08	irgsp1_rep	mRNA	24828211	24830863	.	-	.	ID=Os08t0502700-01;Name=Os08t0502700-01;Locus_id=Os08g0502700;Note=Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 domain containing protein.;Transcript_evidence=AK065126 (DDBJ%2C Best hit),AK064774 (DDBJ%2C Best hit);ORF_evidence=B6T171 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferase%2C class V/Cysteine desulfurase (IPR000192),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424),Aminotransferase class-V pyridoxal-phosphate binding site (IPR020578);NIAS_FLcDNA=J013001P06,J013000A23;Expression=AK065126;TENOR=Os08t0502700-01;KEGG=Os08t0502700-01 (EC:2.6.1.44%2C EC:2.6.1.45%2C EC:2.6.1.51)
Chr08	irgsp1_rep	five_prime_UTR	24830785	24830863	.	-	.	Parent=Os08t0502700-01
Chr08	irgsp1_rep	five_prime_UTR	24830117	24830120	.	-	.	Parent=Os08t0502700-01
Chr08	irgsp1_rep	CDS	24829909	24830116	.	-	0	Parent=Os08t0502700-01
Chr08	irgsp1_rep	CDS	24829421	24829705	.	-	2	Parent=Os08t0502700-01
Chr08	irgsp1_rep	CDS	24828959	24829325	.	-	2	Parent=Os08t0502700-01
Chr08	irgsp1_rep	CDS	24828655	24828865	.	-	1	Parent=Os08t0502700-01
Chr08	irgsp1_rep	CDS	24828425	24828562	.	-	0	Parent=Os08t0502700-01
Chr08	irgsp1_rep	three_prime_UTR	24828211	24828424	.	-	.	Parent=Os08t0502700-01
Chr08	irgsp1_rep	mRNA	24828163	24829966	.	-	.	ID=Os08t0502700-03;Name=Os08t0502700-03;Locus_id=Os08g0502700;Note=Similar to serine--glyoxylate aminotransferase.;Transcript_evidence=AK099206 (DDBJ%2C Best hit);ORF_evidence=Q3S2I1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferase%2C class V/Cysteine desulfurase (IPR000192),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424),Aminotransferase class-V pyridoxal-phosphate binding site (IPR020578);NIAS_FLcDNA=J013049F20;Expression=AK099206;TENOR=Os08t0502700-03;KEGG=Os08t0502700-03 (EC:2.6.1.44%2C EC:2.6.1.45%2C EC:2.6.1.51)
Chr08	irgsp1_rep	CDS	24829909	24829966	.	-	0	Parent=Os08t0502700-03
Chr08	irgsp1_rep	CDS	24829421	24829705	.	-	2	Parent=Os08t0502700-03
Chr08	irgsp1_rep	CDS	24828959	24829325	.	-	2	Parent=Os08t0502700-03
Chr08	irgsp1_rep	CDS	24828655	24828865	.	-	1	Parent=Os08t0502700-03
Chr08	irgsp1_rep	CDS	24828425	24828562	.	-	0	Parent=Os08t0502700-03
Chr08	irgsp1_rep	three_prime_UTR	24828163	24828424	.	-	.	Parent=Os08t0502700-03
Chr08	irgsp1_rep	mRNA	24837690	24842084	.	+	.	ID=Os08t0502800-01;Name=Os08t0502800-01;Locus_id=Os08g0502800;Note=SWIB/MDM2 domain containing protein.;Transcript_evidence=AK105444 (DDBJ%2C Best hit);ORF_evidence=B8BCD6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=SWIB/MDM2 domain (IPR003121),SWIB domain (IPR019835);NIAS_FLcDNA=001-125-A11;Expression=AK105444;TENOR=Os08t0502800-01;KEGG=Os08t0502800-01
Chr08	irgsp1_rep	five_prime_UTR	24837690	24837788	.	+	.	Parent=Os08t0502800-01
Chr08	irgsp1_rep	CDS	24837789	24838396	.	+	0	Parent=Os08t0502800-01
Chr08	irgsp1_rep	CDS	24839290	24839401	.	+	1	Parent=Os08t0502800-01
Chr08	irgsp1_rep	CDS	24839492	24839663	.	+	0	Parent=Os08t0502800-01
Chr08	irgsp1_rep	CDS	24839746	24839942	.	+	2	Parent=Os08t0502800-01
Chr08	irgsp1_rep	CDS	24841164	24841295	.	+	0	Parent=Os08t0502800-01
Chr08	irgsp1_rep	three_prime_UTR	24841296	24841298	.	+	.	Parent=Os08t0502800-01
Chr08	irgsp1_rep	three_prime_UTR	24841609	24842084	.	+	.	Parent=Os08t0502800-01
Chr08	irgsp1_rep	mRNA	24854285	24855659	.	+	.	ID=Os08t0503000-01;Name=Os08t0503000-01;Locus_id=Os08g0503000;Note=Hypothetical protein.;Transcript_evidence=AK103001 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J033116G04;TENOR=Os08t0503000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	24854285	24854376	.	+	.	Parent=Os08t0503000-01
Chr08	irgsp1_rep	CDS	24854377	24854389	.	+	0	Parent=Os08t0503000-01
Chr08	irgsp1_rep	CDS	24854938	24855398	.	+	2	Parent=Os08t0503000-01
Chr08	irgsp1_rep	three_prime_UTR	24855399	24855659	.	+	.	Parent=Os08t0503000-01
Chr08	irgsp1_rep	mRNA	24865941	24872043	.	+	.	ID=Os08t0503200-01;Name=Os08t0503200-01;Locus_id=Os08g0503200;Note=PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain domain containing protein.;Transcript_evidence=AK065218 (DDBJ%2C Best hit),AK065539 (DDBJ%2C Best hit);ORF_evidence=B8BC94 (UniProt);GO=Biological Process: glycerol metabolic process (GO:0006071),Biological Process: lipid metabolic process (GO:0006629),Molecular Function: phosphoric diester hydrolase activity (GO:0008081),Molecular Function: glycerophosphodiester phosphodiesterase activity (GO:0008889);InterPro=Glycerophosphoryl diester phosphodiesterase (IPR004129),PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain (IPR017946);NIAS_FLcDNA=J013002G11,J013030N03;Expression=AK065218;TENOR=Os08t0503200-01;KEGG=Os08t0503200-01
Chr08	irgsp1_rep	five_prime_UTR	24865941	24866084	.	+	.	Parent=Os08t0503200-01
Chr08	irgsp1_rep	CDS	24866085	24866235	.	+	0	Parent=Os08t0503200-01
Chr08	irgsp1_rep	CDS	24866737	24867030	.	+	2	Parent=Os08t0503200-01
Chr08	irgsp1_rep	CDS	24867796	24867911	.	+	2	Parent=Os08t0503200-01
Chr08	irgsp1_rep	CDS	24868021	24868519	.	+	0	Parent=Os08t0503200-01
Chr08	irgsp1_rep	CDS	24869475	24869516	.	+	2	Parent=Os08t0503200-01
Chr08	irgsp1_rep	CDS	24869618	24869908	.	+	2	Parent=Os08t0503200-01
Chr08	irgsp1_rep	CDS	24870035	24870174	.	+	2	Parent=Os08t0503200-01
Chr08	irgsp1_rep	CDS	24870520	24871012	.	+	0	Parent=Os08t0503200-01
Chr08	irgsp1_rep	CDS	24871416	24871726	.	+	2	Parent=Os08t0503200-01
Chr08	irgsp1_rep	three_prime_UTR	24871727	24872043	.	+	.	Parent=Os08t0503200-01
Chr08	irgsp1_rep	mRNA	24863936	24872487	.	-	.	ID=Os08t0503300-00;Name=Os08t0503300-00;Locus_id=Os08g0503300;Note=Hypothetical conserved gene.;Transcript_evidence=CT835949 (DDBJ%2C Best hit);ORF_evidence=NP_001062174.1 (RefSeq);TENOR=Os08t0503300-00;KEGG=Os08t0503300-00
Chr08	irgsp1_rep	five_prime_UTR	24872381	24872487	.	-	.	Parent=Os08t0503300-00
Chr08	irgsp1_rep	CDS	24872252	24872380	.	-	0	Parent=Os08t0503300-00
Chr08	irgsp1_rep	CDS	24864180	24864296	.	-	0	Parent=Os08t0503300-00
Chr08	irgsp1_rep	three_prime_UTR	24863936	24864179	.	-	.	Parent=Os08t0503300-00
Chr08	irgsp1_rep	mRNA	24866018	24871612	.	-	.	ID=Os08t0503400-00;Name=Os08t0503400-00;Locus_id=Os08g0503400;Note=Hypothetical protein.;Transcript_evidence=tplb0061g09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0503400-00
Chr08	irgsp1_rep	five_prime_UTR	24871417	24871612	.	-	.	Parent=Os08t0503400-00
Chr08	irgsp1_rep	five_prime_UTR	24870517	24871013	.	-	.	Parent=Os08t0503400-00
Chr08	irgsp1_rep	five_prime_UTR	24870035	24870170	.	-	.	Parent=Os08t0503400-00
Chr08	irgsp1_rep	five_prime_UTR	24869587	24869908	.	-	.	Parent=Os08t0503400-00
Chr08	irgsp1_rep	five_prime_UTR	24868045	24868527	.	-	.	Parent=Os08t0503400-00
Chr08	irgsp1_rep	CDS	24868024	24868044	.	-	0	Parent=Os08t0503400-00
Chr08	irgsp1_rep	CDS	24867794	24867917	.	-	0	Parent=Os08t0503400-00
Chr08	irgsp1_rep	CDS	24866898	24867028	.	-	2	Parent=Os08t0503400-00
Chr08	irgsp1_rep	three_prime_UTR	24866742	24866897	.	-	.	Parent=Os08t0503400-00
Chr08	irgsp1_rep	three_prime_UTR	24866018	24866240	.	-	.	Parent=Os08t0503400-00
Chr08	irgsp1_rep	mRNA	24882927	24886554	.	-	.	ID=Os08t0503600-01;Name=Os08t0503600-01;Locus_id=Os08g0503600;Note=Hypothetical protein.;Transcript_evidence=AK119300 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-130-E12;TENOR=Os08t0503600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	24885204	24886554	.	-	.	Parent=Os08t0503600-01
Chr08	irgsp1_rep	five_prime_UTR	24884107	24884268	.	-	.	Parent=Os08t0503600-01
Chr08	irgsp1_rep	CDS	24883372	24884106	.	-	0	Parent=Os08t0503600-01
Chr08	irgsp1_rep	three_prime_UTR	24882927	24883371	.	-	.	Parent=Os08t0503600-01
Chr08	irgsp1_rep	mRNA	24883255	24886266	.	+	.	ID=Os08t0503700-01;Name=Os08t0503700-01;Locus_id=Os08g0503700;Note=Sodium/sulphate symporter family protein.;Transcript_evidence=AK072183 (DDBJ%2C Best hit);ORF_evidence=NP_001148320.1 (RefSeq);GO=Biological Process: sodium ion transport (GO:0006814),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Sodium/sulphate symporter (IPR001898);NIAS_FLcDNA=J013151H08;Expression=AK072183;TENOR=Os08t0503700-01;KEGG=Os08t0503700-01
Chr08	irgsp1_rep	five_prime_UTR	24883255	24883351	.	+	.	Parent=Os08t0503700-01
Chr08	irgsp1_rep	CDS	24883352	24884312	.	+	0	Parent=Os08t0503700-01
Chr08	irgsp1_rep	CDS	24884805	24884848	.	+	2	Parent=Os08t0503700-01
Chr08	irgsp1_rep	CDS	24885047	24885142	.	+	0	Parent=Os08t0503700-01
Chr08	irgsp1_rep	CDS	24885241	24885751	.	+	0	Parent=Os08t0503700-01
Chr08	irgsp1_rep	CDS	24885858	24885892	.	+	2	Parent=Os08t0503700-01
Chr08	irgsp1_rep	three_prime_UTR	24885893	24886266	.	+	.	Parent=Os08t0503700-01
Chr08	irgsp1_rep	mRNA	24883311	24886252	.	+	.	ID=Os08t0503700-02;Name=Os08t0503700-02;Locus_id=Os08g0503700;Note=Sodium/sulphate symporter family protein.;Transcript_evidence=AK098863 (DDBJ%2C Best hit);ORF_evidence=NP_001148320.1 (RefSeq);GO=Biological Process: sodium ion transport (GO:0006814),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Sodium/sulphate symporter (IPR001898);NIAS_FLcDNA=J013000P05;Expression=AK098863;TENOR=Os08t0503700-02;KEGG=Os08t0503700-02
Chr08	irgsp1_rep	five_prime_UTR	24883311	24883351	.	+	.	Parent=Os08t0503700-02
Chr08	irgsp1_rep	CDS	24883352	24884312	.	+	0	Parent=Os08t0503700-02
Chr08	irgsp1_rep	CDS	24884805	24884848	.	+	2	Parent=Os08t0503700-02
Chr08	irgsp1_rep	CDS	24885047	24885142	.	+	0	Parent=Os08t0503700-02
Chr08	irgsp1_rep	CDS	24885241	24885751	.	+	0	Parent=Os08t0503700-02
Chr08	irgsp1_rep	CDS	24885858	24885892	.	+	2	Parent=Os08t0503700-02
Chr08	irgsp1_rep	three_prime_UTR	24885893	24886252	.	+	.	Parent=Os08t0503700-02
Chr08	irgsp1_rep	mRNA	24887773	24891876	.	+	.	ID=Os08t0503800-01;Name=Os08t0503800-01;Locus_id=Os08g0503800;RAP-DB Gene Symbol Synonym(s)=RCN11%2C Xyl%2C OsXylT%2C RCN11/OsXylT;RAP-DB Gene Name Synonym(s)=REDUCED CULM NUMBER 11%2C beta 1%2C2-xylosyltransferase%2C reduced culm number11;CGSNL Gene Symbol=RCN11;CGSNL Gene Name=REDUCED CULM NUMBER 11;Oryzabase Gene Symbol Synonym(s)=Xyl%2C OsXylT%2C RCN11/OsXylT;Oryzabase Gene Name Synonym(s)=beta 1%2C 2-xylosyltransferase%2C reduced culm number11;Note=Beta 1%2C2-xylosyltransferase%2C Response to abiotic stresses and phytohormones;Transcript_evidence=AK101954;ORF_evidence=Q6ZFH6;GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyltransferase AER61%2C uncharacterised (IPR007657);NIAS_FLcDNA=J033075J17;Manual Curation=June 4%2C 2015;Literature_PMID=26025522;Oryzabase=11251;Expression=AK101954;TENOR=Os08t0503800-01;KEGG=Os08t0503800-01 (EC:2.4.2.38)
Chr08	irgsp1_rep	five_prime_UTR	24887773	24887865	.	+	.	Parent=Os08t0503800-01
Chr08	irgsp1_rep	CDS	24887866	24888597	.	+	0	Parent=Os08t0503800-01
Chr08	irgsp1_rep	CDS	24889795	24889944	.	+	0	Parent=Os08t0503800-01
Chr08	irgsp1_rep	CDS	24890747	24891466	.	+	0	Parent=Os08t0503800-01
Chr08	irgsp1_rep	three_prime_UTR	24891467	24891876	.	+	.	Parent=Os08t0503800-01
Chr08	irgsp1_rep	mRNA	24905368	24908959	.	+	.	ID=Os08t0504000-01;Name=Os08t0504000-01;Locus_id=Os08g0504000;CGSNL Gene Symbol=DLN212;CGSNL Gene Name=DLN REPRESSOR 212;Oryzabase Gene Symbol Synonym(s)=OsDLN212;Oryzabase Gene Name Synonym(s)=DLN repressor 212%2C DLN motif protein 212;Note=Similar to WIP5 protein.;Transcript_evidence=AK287566 (DDBJ%2C Best hit);ORF_evidence=A6N8R9 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J065027L04;Oryzabase=23229;TENOR=Os08t0504000-01;KEGG=Os08t0504000-01
Chr08	irgsp1_rep	five_prime_UTR	24905368	24905531	.	+	.	Parent=Os08t0504000-01
Chr08	irgsp1_rep	CDS	24905532	24906383	.	+	0	Parent=Os08t0504000-01
Chr08	irgsp1_rep	CDS	24908106	24908570	.	+	0	Parent=Os08t0504000-01
Chr08	irgsp1_rep	three_prime_UTR	24908571	24908959	.	+	.	Parent=Os08t0504000-01
Chr08	irgsp1_rep	mRNA	24917368	24918193	.	-	.	ID=Os08t0504200-00;Name=Os08t0504200-00;Locus_id=Os08g0504200;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);InterPro=Ribonuclease H1%2C N-terminal (IPR011320);TENOR=Os08t0504200-00
Chr08	irgsp1_rep	five_prime_UTR	24918190	24918193	.	-	.	Parent=Os08t0504200-00
Chr08	irgsp1_rep	CDS	24917368	24918189	.	-	0	Parent=Os08t0504200-00
Chr08	irgsp1_rep	mRNA	24929699	24934781	.	-	.	ID=Os08t0504400-01;Name=Os08t0504400-01;Locus_id=Os08g0504400;Note=Similar to uncharacterized enzyme involved in pigment biosynthesis.;Transcript_evidence=AK072089 (DDBJ%2C Best hit);ORF_evidence=B6T7U3 (UniProt);GO=Molecular Function: hydrolase activity%2C acting on glycosyl bonds (GO:0016798);InterPro=Pseudouridine-5&apos%3B-phosphate glycosidase (IPR007342),Indigoidine synthase A-like (IPR022830);NIAS_FLcDNA=J013116B08;Expression=AK072089;TENOR=Os08t0504400-01;KEGG=Os08t0504400-01
Chr08	irgsp1_rep	five_prime_UTR	24934742	24934781	.	-	.	Parent=Os08t0504400-01
Chr08	irgsp1_rep	CDS	24934618	24934741	.	-	0	Parent=Os08t0504400-01
Chr08	irgsp1_rep	CDS	24934391	24934501	.	-	2	Parent=Os08t0504400-01
Chr08	irgsp1_rep	CDS	24934170	24934252	.	-	2	Parent=Os08t0504400-01
Chr08	irgsp1_rep	CDS	24933974	24934033	.	-	0	Parent=Os08t0504400-01
Chr08	irgsp1_rep	CDS	24933767	24933827	.	-	0	Parent=Os08t0504400-01
Chr08	irgsp1_rep	CDS	24932503	24932609	.	-	2	Parent=Os08t0504400-01
Chr08	irgsp1_rep	CDS	24931590	24931667	.	-	0	Parent=Os08t0504400-01
Chr08	irgsp1_rep	CDS	24931257	24931302	.	-	0	Parent=Os08t0504400-01
Chr08	irgsp1_rep	CDS	24930549	24930857	.	-	2	Parent=Os08t0504400-01
Chr08	irgsp1_rep	CDS	24930218	24930301	.	-	2	Parent=Os08t0504400-01
Chr08	irgsp1_rep	CDS	24929892	24929914	.	-	2	Parent=Os08t0504400-01
Chr08	irgsp1_rep	three_prime_UTR	24929699	24929891	.	-	.	Parent=Os08t0504400-01
Chr08	irgsp1_rep	mRNA	24929625	24934744	.	-	.	ID=Os08t0504400-02;Name=Os08t0504400-02;Locus_id=Os08g0504400;Note=Similar to Uncharacterized enzyme involved in pigment biosynthesis.;Transcript_evidence=AK069190 (DDBJ%2C Best hit);ORF_evidence=B6T7U3 (UniProt);GO=Molecular Function: hydrolase activity%2C acting on glycosyl bonds (GO:0016798);InterPro=Pseudouridine-5&apos%3B-phosphate glycosidase (IPR007342),Indigoidine synthase A-like (IPR022830);NIAS_FLcDNA=J023006O19;Expression=AK069190;TENOR=Os08t0504400-02;KEGG=Os08t0504400-02
Chr08	irgsp1_rep	five_prime_UTR	24934742	24934744	.	-	.	Parent=Os08t0504400-02
Chr08	irgsp1_rep	CDS	24934618	24934741	.	-	0	Parent=Os08t0504400-02
Chr08	irgsp1_rep	CDS	24934391	24934501	.	-	2	Parent=Os08t0504400-02
Chr08	irgsp1_rep	CDS	24934170	24934252	.	-	2	Parent=Os08t0504400-02
Chr08	irgsp1_rep	CDS	24933974	24934033	.	-	0	Parent=Os08t0504400-02
Chr08	irgsp1_rep	CDS	24933767	24933827	.	-	0	Parent=Os08t0504400-02
Chr08	irgsp1_rep	CDS	24932503	24932609	.	-	2	Parent=Os08t0504400-02
Chr08	irgsp1_rep	CDS	24931590	24931667	.	-	0	Parent=Os08t0504400-02
Chr08	irgsp1_rep	CDS	24931257	24931302	.	-	0	Parent=Os08t0504400-02
Chr08	irgsp1_rep	CDS	24930737	24930857	.	-	2	Parent=Os08t0504400-02
Chr08	irgsp1_rep	CDS	24930549	24930634	.	-	1	Parent=Os08t0504400-02
Chr08	irgsp1_rep	CDS	24930262	24930299	.	-	2	Parent=Os08t0504400-02
Chr08	irgsp1_rep	three_prime_UTR	24930218	24930261	.	-	.	Parent=Os08t0504400-02
Chr08	irgsp1_rep	three_prime_UTR	24929625	24929914	.	-	.	Parent=Os08t0504400-02
Chr08	irgsp1_rep	mRNA	24935623	24936616	.	+	.	ID=Os08t0504500-01;Name=Os08t0504500-01;Locus_id=Os08g0504500;Note=Mog1/PsbP/DUF1795%2C alpha/beta/alpha sandwich domain containing protein.;Transcript_evidence=AK062330 (DDBJ%2C Best hit);ORF_evidence=NP_001148434.1 (RefSeq);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: oxygen evolving complex (GO:0009654),Cellular Component: extrinsic to membrane (GO:0019898),Molecular Function: calcium ion binding (GO:0005509);InterPro=Photosystem II PsbP%2C oxygen evolving complex (IPR002683),Mog1/PsbP%2C alpha/beta/alpha sandwich (IPR016123),Mog1/PsbP/DUF1795%2C alpha/beta/alpha sandwich (IPR016124);NIAS_FLcDNA=001-101-D09;Expression=AK062330;TENOR=Os08t0504500-01;KEGG=Os08t0504500-01
Chr08	irgsp1_rep	five_prime_UTR	24935623	24935695	.	+	.	Parent=Os08t0504500-01
Chr08	irgsp1_rep	CDS	24935696	24936427	.	+	0	Parent=Os08t0504500-01
Chr08	irgsp1_rep	three_prime_UTR	24936428	24936616	.	+	.	Parent=Os08t0504500-01
Chr08	irgsp1_rep	mRNA	24938716	24946837	.	+	.	ID=Os08t0504600-01;Name=Os08t0504600-01;Locus_id=Os08g0504600;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK064868 (DDBJ%2C Best hit);ORF_evidence=B9G1P6 (UniProt);GO=Biological Process: mRNA processing (GO:0006397),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Splicing factor PWI (IPR002483),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013000I21;Expression=AK064868;TENOR=Os08t0504600-01;KEGG=Os08t0504600-01
Chr08	irgsp1_rep	five_prime_UTR	24938716	24938969	.	+	.	Parent=Os08t0504600-01
Chr08	irgsp1_rep	CDS	24938970	24939119	.	+	0	Parent=Os08t0504600-01
Chr08	irgsp1_rep	CDS	24940417	24940517	.	+	0	Parent=Os08t0504600-01
Chr08	irgsp1_rep	CDS	24941652	24942030	.	+	1	Parent=Os08t0504600-01
Chr08	irgsp1_rep	CDS	24942751	24943596	.	+	0	Parent=Os08t0504600-01
Chr08	irgsp1_rep	CDS	24944224	24944281	.	+	0	Parent=Os08t0504600-01
Chr08	irgsp1_rep	CDS	24944463	24944530	.	+	2	Parent=Os08t0504600-01
Chr08	irgsp1_rep	CDS	24944606	24944712	.	+	0	Parent=Os08t0504600-01
Chr08	irgsp1_rep	CDS	24945508	24945595	.	+	1	Parent=Os08t0504600-01
Chr08	irgsp1_rep	CDS	24945990	24946247	.	+	0	Parent=Os08t0504600-01
Chr08	irgsp1_rep	three_prime_UTR	24946248	24946837	.	+	.	Parent=Os08t0504600-01
Chr08	irgsp1_rep	mRNA	24944531	24946932	.	+	.	ID=Os08t0504600-02;Name=Os08t0504600-02;Locus_id=Os08g0504600;Note=Similar to RNA recognition motif family protein.;Transcript_evidence=AK071539 (DDBJ%2C Best hit);ORF_evidence=NP_001148871.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023101B22;Expression=AK071539;TENOR=Os08t0504600-02;KEGG=Os08t0504600-02
Chr08	irgsp1_rep	five_prime_UTR	24944531	24944557	.	+	.	Parent=Os08t0504600-02
Chr08	irgsp1_rep	CDS	24944558	24944712	.	+	0	Parent=Os08t0504600-02
Chr08	irgsp1_rep	CDS	24945508	24945595	.	+	1	Parent=Os08t0504600-02
Chr08	irgsp1_rep	CDS	24945990	24946247	.	+	0	Parent=Os08t0504600-02
Chr08	irgsp1_rep	three_prime_UTR	24946248	24946932	.	+	.	Parent=Os08t0504600-02
Chr08	irgsp1_rep	mRNA	24953937	24954919	.	+	.	ID=Os08t0504700-01;Name=Os08t0504700-01;Locus_id=Os08g0504700;RAP-DB Gene Symbol Synonym(s)=SAP11%2C OsDOG%2C OsSAP11;RAP-DB Gene Name Synonym(s)=STRESS ASSOCIATED PROTEIN GENE 11%2C Oryza sativa dwarf rice with overexpression of gibberellin-induced gene%2C dwarf rice with overexpression of gibberellin-induced gene%2C stress associated protein 11;CGSNL Gene Symbol=SAP11;CGSNL Gene Name=STRESS ASSOCIATED PROTEIN GENE 11;Oryzabase Gene Symbol Synonym(s)=OsDOG%2C OsSAP11%2C DOG;Oryzabase Gene Name Synonym(s)=Oryza sativa dwarf rice with overexpression of gibberellin-induced gene%2C dwarf rice with overexpression of gibberellin-induced gene%2C stress associated protein 11;Note=Gibberellin-induced A20/AN1 zinc-finger protein%2C Negative regulation of GA (gibberellin) -mediated cell elongation;Transcript_evidence=AY224422,AK101969;ORF_evidence=Q84PD8;GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C A20-type (IPR002653),Zinc finger%2C AN1-type (IPR000058);NIAS_FLcDNA=J033076J18;Manual Curation=April 6%2C 2016;Literature_PMID=21316795;Oryzabase=9254;Expression=AK101969;TENOR=Os08t0504700-01;KEGG=Os08t0504700-01
Chr08	irgsp1_rep	five_prime_UTR	24953937	24954004	.	+	.	Parent=Os08t0504700-01
Chr08	irgsp1_rep	CDS	24954005	24954517	.	+	0	Parent=Os08t0504700-01
Chr08	irgsp1_rep	three_prime_UTR	24954518	24954919	.	+	.	Parent=Os08t0504700-01
Chr08	irgsp1_rep	mRNA	24965854	24967348	.	+	.	ID=Os08t0504800-01;Name=Os08t0504800-01;Locus_id=Os08g0504800;Note=Similar to protein kinase.;Transcript_evidence=AK069460 (DDBJ%2C Best hit);ORF_evidence=NP_001148257.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023022B21;TENOR=Os08t0504800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	24965854	24965864	.	+	.	Parent=Os08t0504800-01
Chr08	irgsp1_rep	CDS	24965865	24967136	.	+	0	Parent=Os08t0504800-01
Chr08	irgsp1_rep	three_prime_UTR	24967137	24967348	.	+	.	Parent=Os08t0504800-01
Chr08	irgsp1_rep	mRNA	24966212	24967034	.	-	.	ID=Os08t0504900-00;Name=Os08t0504900-00;Locus_id=Os08g0504900;Note=Hypothetical protein.;Transcript_evidence=EU943630 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0504900-00
Chr08	irgsp1_rep	five_prime_UTR	24966536	24967034	.	-	.	Parent=Os08t0504900-00
Chr08	irgsp1_rep	CDS	24966411	24966535	.	-	0	Parent=Os08t0504900-00
Chr08	irgsp1_rep	CDS	24966212	24966338	.	-	1	Parent=Os08t0504900-00
Chr08	irgsp1_rep	mRNA	24976288	24976736	.	+	.	ID=Os08t0505001-01;Name=Os08t0505001-01;Locus_id=Os08g0505001;Note=Conserved hypothetical protein.;Transcript_evidence=AK288090 (DDBJ%2C Best hit);ORF_evidence=Q6Z3T6 (UniProt);NIAS_FLcDNA=J075183E15;TENOR=Os08t0505001-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	24976288	24976315	.	+	.	Parent=Os08t0505001-01
Chr08	irgsp1_rep	CDS	24976316	24976615	.	+	0	Parent=Os08t0505001-01
Chr08	irgsp1_rep	three_prime_UTR	24976616	24976736	.	+	.	Parent=Os08t0505001-01
Chr08	irgsp1_rep	mRNA	24986875	24990425	.	+	.	ID=Os08t0505200-01;Name=Os08t0505200-01;Locus_id=Os08g0505200;Note=tRNA-binding arm domain containing protein.;Transcript_evidence=AK067190 (DDBJ%2C Best hit);ORF_evidence=NP_181761.1 (RefSeq);NIAS_FLcDNA=J013094E14;Expression=AK067190;TENOR=Os08t0505200-01;KEGG=Os08t0505200-01
Chr08	irgsp1_rep	five_prime_UTR	24986875	24987283	.	+	.	Parent=Os08t0505200-01
Chr08	irgsp1_rep	CDS	24987284	24988026	.	+	0	Parent=Os08t0505200-01
Chr08	irgsp1_rep	CDS	24988116	24988410	.	+	1	Parent=Os08t0505200-01
Chr08	irgsp1_rep	CDS	24988584	24988790	.	+	0	Parent=Os08t0505200-01
Chr08	irgsp1_rep	CDS	24988892	24989065	.	+	0	Parent=Os08t0505200-01
Chr08	irgsp1_rep	CDS	24989241	24989429	.	+	0	Parent=Os08t0505200-01
Chr08	irgsp1_rep	CDS	24989532	24989645	.	+	0	Parent=Os08t0505200-01
Chr08	irgsp1_rep	CDS	24989759	24990100	.	+	0	Parent=Os08t0505200-01
Chr08	irgsp1_rep	three_prime_UTR	24990101	24990425	.	+	.	Parent=Os08t0505200-01
Chr08	irgsp1_rep	mRNA	24990703	24991223	.	+	.	ID=Os08t0505250-00;Name=Os08t0505250-00;Locus_id=Os08g0505250;Note=Similar to Zinc finger%2C C3HC4 type family protein.;Transcript_evidence=CT836004 (DDBJ%2C Best hit);ORF_evidence=Q2R253 (UniProt);TENOR=Os08t0505250-00;KEGG=Os08t0505250-00
Chr08	irgsp1_rep	five_prime_UTR	24990703	24990982	.	+	.	Parent=Os08t0505250-00
Chr08	irgsp1_rep	CDS	24990983	24991177	.	+	0	Parent=Os08t0505250-00
Chr08	irgsp1_rep	three_prime_UTR	24991178	24991223	.	+	.	Parent=Os08t0505250-00
Chr08	irgsp1_rep	mRNA	24993082	24993406	.	-	.	ID=Os08t0505300-00;Name=Os08t0505300-00;Locus_id=Os08g0505300;Oryzabase Gene Name Synonym(s)=Ribosomal protein L31;Note=Similar to 60S ribosomal protein L31.;Transcript_evidence=D29722 (DDBJ%2C Best hit);ORF_evidence=B6SJB0 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L31e (IPR000054),Ribosomal protein L31e domain (IPR023621);Oryzabase=17751;Expression=D29722;TENOR=Os08t0505300-00;KEGG=Os08t0505300-00
Chr08	irgsp1_rep	five_prime_UTR	24993406	24993406	.	-	.	Parent=Os08t0505300-00
Chr08	irgsp1_rep	CDS	24993205	24993405	.	-	0	Parent=Os08t0505300-00
Chr08	irgsp1_rep	three_prime_UTR	24993082	24993204	.	-	.	Parent=Os08t0505300-00
Chr08	irgsp1_rep	mRNA	25005598	25006216	.	-	.	ID=Os08t0505700-01;Name=Os08t0505700-01;Locus_id=Os08g0505700;Note=Hypothetical conserved gene.;Transcript_evidence=AK108070 (DDBJ%2C Best hit);ORF_evidence=A2YWT8 (UniProt);NIAS_FLcDNA=002-138-C06;Expression=AK108070;TENOR=Os08t0505700-01;KEGG=Os08t0505700-01
Chr08	irgsp1_rep	five_prime_UTR	25006171	25006216	.	-	.	Parent=Os08t0505700-01
Chr08	irgsp1_rep	CDS	25005940	25006170	.	-	0	Parent=Os08t0505700-01
Chr08	irgsp1_rep	three_prime_UTR	25005598	25005939	.	-	.	Parent=Os08t0505700-01
Chr08	irgsp1_rep	mRNA	25015802	25017363	.	-	.	ID=Os08t0505900-01;Name=Os08t0505900-01;Locus_id=Os08g0505900;RAP-DB Gene Symbol Synonym(s)=PGIP6%2C Ospgip6%2C pgip6%2C OsPGIP6;RAP-DB Gene Name Synonym(s)=POLYGALACTURONASE-INHIBITING PROTEIN 6%2C Polygalacturonase-inhibiting protein 6%2C polygalacturonase inhibiting protein 6;CGSNL Gene Symbol=PGIP6;CGSNL Gene Name=POLYGALACTURONASE-INHIBITING PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=Ospgip6%2C pgip6%2C OsPGIP6;Oryzabase Gene Name Synonym(s)=Polygalacturonase-inhibiting protein 6%2C polygalacturonase inhibiting protein 6;Note=Leucine-rich repeat (LRR) protein%2C Inhibitor of fungal polygalacturonase%2C Defence response;Transcript_evidence=AK060670,AK120866,AK120908;ORF_evidence=Q6Z3T9;GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat domain%2C L domain-like (IPR032675),Leucine-rich repeat-containing N-terminal%2C plant-type (IPR013210),Leucine-rich repeat (IPR001611);NIAS_FLcDNA=001-028-G04, J023025G09, J023031M05;Manual Curation=April 15%2C 2016;Literature_PMID=22362377;Oryzabase=10382;Expression=AK060670;TENOR=Os08t0505900-01;KEGG=Os08t0505900-01
Chr08	irgsp1_rep	five_prime_UTR	25017319	25017363	.	-	.	Parent=Os08t0505900-01
Chr08	irgsp1_rep	CDS	25016176	25017318	.	-	0	Parent=Os08t0505900-01
Chr08	irgsp1_rep	three_prime_UTR	25015802	25016175	.	-	.	Parent=Os08t0505900-01
Chr08	irgsp1_rep	mRNA	25023316	25026380	.	+	.	ID=Os08t0506000-01;Name=Os08t0506000-01;Locus_id=Os08g0506000;Note=Ovarian tumour%2C otubain domain containing protein.;Transcript_evidence=AK073328 (DDBJ%2C Best hit);ORF_evidence=B6TU32 (UniProt);InterPro=Ovarian tumour%2C otubain (IPR003323);NIAS_FLcDNA=J033029N11;Expression=AK073328;TENOR=Os08t0506000-01;KEGG=Os08t0506000-01
Chr08	irgsp1_rep	five_prime_UTR	25023316	25023664	.	+	.	Parent=Os08t0506000-01
Chr08	irgsp1_rep	five_prime_UTR	25024168	25024186	.	+	.	Parent=Os08t0506000-01
Chr08	irgsp1_rep	CDS	25024187	25024685	.	+	0	Parent=Os08t0506000-01
Chr08	irgsp1_rep	CDS	25024793	25024914	.	+	2	Parent=Os08t0506000-01
Chr08	irgsp1_rep	CDS	25025002	25025042	.	+	0	Parent=Os08t0506000-01
Chr08	irgsp1_rep	CDS	25025146	25025244	.	+	1	Parent=Os08t0506000-01
Chr08	irgsp1_rep	CDS	25025718	25025934	.	+	1	Parent=Os08t0506000-01
Chr08	irgsp1_rep	three_prime_UTR	25025935	25026380	.	+	.	Parent=Os08t0506000-01
Chr08	irgsp1_rep	mRNA	25031840	25039438	.	+	.	ID=Os08t0506100-01;Name=Os08t0506100-01;Locus_id=Os08g0506100;Note=Conserved hypothetical protein.;Transcript_evidence=AK066674 (DDBJ%2C Best hit);ORF_evidence=A3BUN4 (UniProt);NIAS_FLcDNA=J013073O22;Expression=AK066674;TENOR=Os08t0506100-01;KEGG=Os08t0506100-01
Chr08	irgsp1_rep	five_prime_UTR	25031840	25031955	.	+	.	Parent=Os08t0506100-01
Chr08	irgsp1_rep	five_prime_UTR	25032102	25032258	.	+	.	Parent=Os08t0506100-01
Chr08	irgsp1_rep	five_prime_UTR	25034369	25034557	.	+	.	Parent=Os08t0506100-01
Chr08	irgsp1_rep	five_prime_UTR	25034659	25034739	.	+	.	Parent=Os08t0506100-01
Chr08	irgsp1_rep	CDS	25034740	25037226	.	+	0	Parent=Os08t0506100-01
Chr08	irgsp1_rep	three_prime_UTR	25037227	25037806	.	+	.	Parent=Os08t0506100-01
Chr08	irgsp1_rep	three_prime_UTR	25038826	25039438	.	+	.	Parent=Os08t0506100-01
Chr08	irgsp1_rep	mRNA	25035505	25036303	.	-	.	ID=Os08t0506225-00;Name=Os08t0506225-00;Locus_id=Os08g0506225;Note=Non-protein coding transcript.;Transcript_evidence=AK368919 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0506225-00
Chr08	irgsp1_rep	exon	25036213	25036303	.	-	.	Parent=Os08t0506225-00
Chr08	irgsp1_rep	exon	25035505	25035971	.	-	.	Parent=Os08t0506225-00
Chr08	irgsp1_rep	mRNA	25053426	25056287	.	-	.	ID=Os08t0506350-01;Name=Os08t0506350-01;Locus_id=Os08g0506350;Note=Conserved hypothetical protein.;Transcript_evidence=AK241499 (DDBJ%2C Best hit);ORF_evidence=NP_001175650.1 (RefSeq);NIAS_FLcDNA=J065167J12;TENOR=Os08t0506350-01;KEGG=Os08t0506350-01
Chr08	irgsp1_rep	five_prime_UTR	25056287	25056287	.	-	.	Parent=Os08t0506350-01
Chr08	irgsp1_rep	CDS	25056032	25056286	.	-	0	Parent=Os08t0506350-01
Chr08	irgsp1_rep	three_prime_UTR	25053426	25056031	.	-	.	Parent=Os08t0506350-01
Chr08	irgsp1_rep	mRNA	25060794	25063403	.	+	.	ID=Os08t0506400-01;Name=Os08t0506400-01;Locus_id=Os08g0506400;CGSNL Gene Symbol=RLCK257;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 257;Oryzabase Gene Symbol Synonym(s)=OsRLCK257;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 257;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK242684 (DDBJ%2C Best hit);ORF_evidence=B6V3C2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J090033G21;Oryzabase=18947;TENOR=Os08t0506400-01;KEGG=Os08t0506400-01
Chr08	irgsp1_rep	five_prime_UTR	25060794	25060835	.	+	.	Parent=Os08t0506400-01
Chr08	irgsp1_rep	CDS	25060836	25062183	.	+	0	Parent=Os08t0506400-01
Chr08	irgsp1_rep	CDS	25062267	25062892	.	+	2	Parent=Os08t0506400-01
Chr08	irgsp1_rep	three_prime_UTR	25062893	25063403	.	+	.	Parent=Os08t0506400-01
Chr08	irgsp1_rep	mRNA	25064640	25066853	.	-	.	ID=Os08t0506500-00;Name=Os08t0506500-00;Locus_id=Os08g0506500;Note=Similar to tRNA/rRNA methyltransferase (SpoU) family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_198040.2 (RefSeq);GO=Biological Process: RNA processing (GO:0006396),Molecular Function: RNA binding (GO:0003723),Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: RNA methyltransferase activity (GO:0008173);InterPro=tRNA/rRNA methyltransferase%2C SpoU (IPR001537),tRNA (cytidine/uridine-2'-O-)-methyltransferase (IPR016914);TENOR=Os08t0506500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	25066533	25066853	.	-	0	Parent=Os08t0506500-00
Chr08	irgsp1_rep	CDS	25065801	25065874	.	-	0	Parent=Os08t0506500-00
Chr08	irgsp1_rep	CDS	25065404	25065464	.	-	1	Parent=Os08t0506500-00
Chr08	irgsp1_rep	CDS	25064640	25064918	.	-	0	Parent=Os08t0506500-00
Chr08	irgsp1_rep	mRNA	25089523	25092373	.	+	.	ID=Os08t0506700-01;Name=Os08t0506700-01;Locus_id=Os08g0506700;Oryzabase Gene Symbol Synonym(s)=OsFBH1%2C OsbHLH112%2C DLN213%2C OsDLN213;Oryzabase Gene Name Synonym(s)=FLOWERING BHLH 1%2C basic helix-loop-helix protein 112%2C DLN repressor 213%2C DLN motif protein 213;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=AK100106 (DDBJ%2C Best hit);ORF_evidence=NP_001148741.1 (RefSeq);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J023004M08;Oryzabase=12368;Expression=AK100106;TENOR=Os08t0506700-01;KEGG=Os08t0506700-01
Chr08	irgsp1_rep	five_prime_UTR	25089523	25089999	.	+	.	Parent=Os08t0506700-01
Chr08	irgsp1_rep	CDS	25090000	25090486	.	+	0	Parent=Os08t0506700-01
Chr08	irgsp1_rep	CDS	25090650	25091002	.	+	2	Parent=Os08t0506700-01
Chr08	irgsp1_rep	CDS	25091088	25091249	.	+	0	Parent=Os08t0506700-01
Chr08	irgsp1_rep	CDS	25091382	25091447	.	+	0	Parent=Os08t0506700-01
Chr08	irgsp1_rep	CDS	25091631	25091699	.	+	0	Parent=Os08t0506700-01
Chr08	irgsp1_rep	CDS	25091957	25092019	.	+	0	Parent=Os08t0506700-01
Chr08	irgsp1_rep	three_prime_UTR	25092020	25092373	.	+	.	Parent=Os08t0506700-01
Chr08	irgsp1_rep	mRNA	25092394	25092949	.	+	.	ID=Os08t0506850-00;Name=Os08t0506850-00;Locus_id=Os08g0506850;Note=Hypothetical gene.;Transcript_evidence=CT836002 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os08t0506850-00;KEGG=Os08t0506850-00
Chr08	irgsp1_rep	five_prime_UTR	25092394	25092679	.	+	.	Parent=Os08t0506850-00
Chr08	irgsp1_rep	CDS	25092680	25092949	.	+	0	Parent=Os08t0506850-00
Chr08	irgsp1_rep	mRNA	25104735	25105616	.	+	.	ID=Os08t0507000-00;Name=Os08t0507000-00;Locus_id=Os08g0507000;Note=Similar to Cyt-P450 monooxygenase.;Transcript_evidence=BT034973 (DDBJ);ORF_evidence=Q8S3F6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);TENOR=Os08t0507000-00;KEGG=Os08t0507000-00
Chr08	irgsp1_rep	CDS	25104735	25105616	.	+	0	Parent=Os08t0507000-00
Chr08	irgsp1_rep	mRNA	25109674	25111322	.	-	.	ID=Os08t0507100-00;Name=Os08t0507100-00;Locus_id=Os08g0507100;CGSNL Gene Symbol=CYP76M10;CGSNL Gene Name=P-450 76M10;Oryzabase Gene Symbol Synonym(s)=CYP76M10;Oryzabase Gene Name Synonym(s)=CytoChrome P450 76M10;Note=CytoChrome P450 family protein.;Transcript_evidence=AF488521 (DDBJ%2C Best hit);ORF_evidence=Q8S3F6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);Oryzabase=12423;Expression=AF488521;TENOR=Os08t0507100-00;KEGG=Os08t0507100-00 (EC:1.14.99.9)
Chr08	irgsp1_rep	five_prime_UTR	25111293	25111322	.	-	.	Parent=Os08t0507100-00
Chr08	irgsp1_rep	CDS	25109775	25111292	.	-	0	Parent=Os08t0507100-00
Chr08	irgsp1_rep	three_prime_UTR	25109674	25109774	.	-	.	Parent=Os08t0507100-00
Chr08	irgsp1_rep	mRNA	25112706	25113293	.	+	.	ID=Os08t0507200-00;Name=Os08t0507200-00;Locus_id=Os08g0507200;Note=Hypothetical conserved gene.;Transcript_evidence=EU958332 (DDBJ);ORF_evidence=A3BUN9 (UniProt);TENOR=Os08t0507200-00;KEGG=Os08t0507200-00
Chr08	irgsp1_rep	CDS	25112706	25113293	.	+	0	Parent=Os08t0507200-00
Chr08	irgsp1_rep	mRNA	25132281	25133719	.	-	.	ID=Os08t0507701-01;Name=Os08t0507701-01;Locus_id=Os08g0507701;Note=Hypothetical protein.;Transcript_evidence=AK242603 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090014L06;TENOR=Os08t0507701-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	25132685	25133719	.	-	0	Parent=Os08t0507701-01
Chr08	irgsp1_rep	three_prime_UTR	25132281	25132684	.	-	.	Parent=Os08t0507701-01
Chr08	irgsp1_rep	mRNA	25132615	25134365	.	+	.	ID=Os08t0507702-01;Name=Os08t0507702-01;Locus_id=Os08g0507702;Note=CytoChrome P450 family protein.;Transcript_evidence=AK099637 (DDBJ%2C Best hit);ORF_evidence=Q8S3F6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J013059L23;Expression=AK099637;TENOR=Os08t0507702-01;KEGG=Os08t0507702-01
Chr08	irgsp1_rep	five_prime_UTR	25132615	25132660	.	+	.	Parent=Os08t0507702-01
Chr08	irgsp1_rep	CDS	25132661	25134052	.	+	0	Parent=Os08t0507702-01
Chr08	irgsp1_rep	three_prime_UTR	25134053	25134365	.	+	.	Parent=Os08t0507702-01
Chr08	irgsp1_rep	mRNA	25155158	25156850	.	+	.	ID=Os08t0508000-01;Name=Os08t0508000-01;Locus_id=Os08g0508000;CGSNL Gene Symbol=CYP76M2;CGSNL Gene Name=P-450 76M2;Oryzabase Gene Symbol Synonym(s)=CYP76M2;Oryzabase Gene Name Synonym(s)=CytoChrome P450 76M2;Note=CytoChrome P450 family protein.;Transcript_evidence=AK102040 (DDBJ%2C Best hit);ORF_evidence=Q8S3F6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J033081G24;Oryzabase=12430;Expression=AK102040;TENOR=Os08t0508000-01;KEGG=Os08t0508000-01
Chr08	irgsp1_rep	five_prime_UTR	25155158	25155176	.	+	.	Parent=Os08t0508000-01
Chr08	irgsp1_rep	CDS	25155177	25156697	.	+	0	Parent=Os08t0508000-01
Chr08	irgsp1_rep	three_prime_UTR	25156698	25156850	.	+	.	Parent=Os08t0508000-01
Chr08	irgsp1_rep	mRNA	25156907	25159842	.	-	.	ID=Os08t0508100-01;Name=Os08t0508100-01;Locus_id=Os08g0508100;Note=Conserved hypothetical protein.;Transcript_evidence=AK242921 (DDBJ%2C Best hit);ORF_evidence=A2XIG7 (UniProt);NIAS_FLcDNA=J090084N03;TENOR=Os08t0508100-01;KEGG=Os08t0508100-01
Chr08	irgsp1_rep	five_prime_UTR	25159736	25159842	.	-	.	Parent=Os08t0508100-01
Chr08	irgsp1_rep	CDS	25159436	25159735	.	-	0	Parent=Os08t0508100-01
Chr08	irgsp1_rep	CDS	25157133	25158644	.	-	0	Parent=Os08t0508100-01
Chr08	irgsp1_rep	three_prime_UTR	25156907	25157132	.	-	.	Parent=Os08t0508100-01
Chr08	irgsp1_rep	mRNA	25197278	25202912	.	-	.	ID=Os08t0508500-00;Name=Os08t0508500-00;Locus_id=Os08g0508500;Oryzabase Gene Symbol Synonym(s)=JMJ717;Oryzabase Gene Name Synonym(s)=Jumonji 717;Note=Similar to predicted protein.;Transcript_evidence=EU968418 (DDBJ);ORF_evidence=XP_002883269.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Transcription factor jumonji/aspartyl beta-hydroxylase (IPR003347),Cupin%2C JmjC-type (IPR022777);Oryzabase=15217;TENOR=Os08t0508500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	25202157	25202912	.	-	0	Parent=Os08t0508500-00
Chr08	irgsp1_rep	CDS	25200183	25200392	.	-	0	Parent=Os08t0508500-00
Chr08	irgsp1_rep	CDS	25199051	25199182	.	-	0	Parent=Os08t0508500-00
Chr08	irgsp1_rep	CDS	25198820	25198963	.	-	0	Parent=Os08t0508500-00
Chr08	irgsp1_rep	CDS	25197796	25197888	.	-	0	Parent=Os08t0508500-00
Chr08	irgsp1_rep	CDS	25197353	25197544	.	-	0	Parent=Os08t0508500-00
Chr08	irgsp1_rep	three_prime_UTR	25197278	25197352	.	-	.	Parent=Os08t0508500-00
Chr08	irgsp1_rep	mRNA	25206777	25209977	.	+	.	ID=Os08t0508600-01;Name=Os08t0508600-01;Locus_id=Os08g0508600;Note=Similar to Pre-rRNA-processing protein TSR2.;Transcript_evidence=AK105183 (DDBJ%2C Best hit);ORF_evidence=B6SI82 (UniProt);InterPro=Pre-rRNA-processing protein TSR2 (IPR019398);NIAS_FLcDNA=001-106-A06;Expression=AK105183;TENOR=Os08t0508600-01;KEGG=Os08t0508600-01
Chr08	irgsp1_rep	five_prime_UTR	25206777	25206855	.	+	.	Parent=Os08t0508600-01
Chr08	irgsp1_rep	CDS	25206856	25207054	.	+	0	Parent=Os08t0508600-01
Chr08	irgsp1_rep	CDS	25207551	25207642	.	+	2	Parent=Os08t0508600-01
Chr08	irgsp1_rep	CDS	25208664	25208777	.	+	0	Parent=Os08t0508600-01
Chr08	irgsp1_rep	CDS	25209613	25209804	.	+	0	Parent=Os08t0508600-01
Chr08	irgsp1_rep	three_prime_UTR	25209805	25209977	.	+	.	Parent=Os08t0508600-01
Chr08	irgsp1_rep	mRNA	25211518	25214721	.	+	.	ID=Os08t0508700-01;Name=Os08t0508700-01;Locus_id=Os08g0508700;CGSNL Gene Symbol=EIL4;CGSNL Gene Name=ETHYLENE INSENSITIVE-LIKE GENE 4;Oryzabase Gene Symbol Synonym(s)=OsEIL4;Oryzabase Gene Name Synonym(s)=EIN3-like protein 4%2C ETHYLENE INSENSITIVE3-LIKE 4%2C EIN3-LIKE 4;Note=Similar to EIL3.;Transcript_evidence=AK072462 (DDBJ%2C Best hit);ORF_evidence=E3VXB5 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Ethylene insensitive 3 (IPR006957),Ethylene insensitive 3-like protein%2C DNA-binding domain (IPR023278);NIAS_FLcDNA=J023115E06;Oryzabase=6128;Expression=AK072462;TENOR=Os08t0508700-01;KEGG=Os08t0508700-01
Chr08	irgsp1_rep	five_prime_UTR	25211518	25211574	.	+	.	Parent=Os08t0508700-01
Chr08	irgsp1_rep	five_prime_UTR	25212036	25212137	.	+	.	Parent=Os08t0508700-01
Chr08	irgsp1_rep	CDS	25212138	25213997	.	+	0	Parent=Os08t0508700-01
Chr08	irgsp1_rep	three_prime_UTR	25213998	25214002	.	+	.	Parent=Os08t0508700-01
Chr08	irgsp1_rep	three_prime_UTR	25214086	25214140	.	+	.	Parent=Os08t0508700-01
Chr08	irgsp1_rep	three_prime_UTR	25214369	25214721	.	+	.	Parent=Os08t0508700-01
Chr08	irgsp1_rep	mRNA	25216460	25224078	.	-	.	ID=Os08t0508800-01;Name=Os08t0508800-01;Locus_id=Os08g0508800;RAP-DB Gene Symbol Synonym(s)=OsHI-LOX;RAP-DB Gene Name Synonym(s)=herbivore-induced type 2 13-lipoxygenase;Oryzabase Gene Symbol Synonym(s)=Lox2:Os:1%2C OsLOX9%2C OsLOX8%2C OsLOX2%2C LOX2%2C OsRLL%2C OsHI-LOX%2C HI-LOX%2C RLL2 LOX%2C RLL2%2C Lox2osPil%2C OsLOX2%3B1%2C LOX2%3B1%2C OsLOX1;Oryzabase Gene Name Synonym(s)=lipoxygenase Lox2:Os:1%2C lipoxygenase 9%2C lipoxygenase 8%2C herbivore-induced type 2 13-lipoxygenase%2C RLL2 lipoxygenase;Note=Type 2 13-lipoxygenase%2C Herbivore-induced defense response;Transcript_evidence=AK241395;ORF_evidence=P38419;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: protein binding (GO:0005515),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on single donors with incorporation of molecular oxygen%2C incorporation of two atoms of oxygen (GO:0016702),Molecular Function: metal ion binding (GO:0046872);InterPro=PLAT/LH2 domain superfamily (IPR036392),Lipoxigenase%2C C-terminal domain superfamily (IPR036226),Lipoxygenase%2C domain 3 (IPR027433),Lipoxygenase%2C plant (IPR001246),PLAT/LH2 domain (IPR001024),Plant lipoxygenase%2C PLAT/LH2 domain (IPR042057),Lipoxygenase%2C C-terminal (IPR013819),Lipoxygenase%2C iron binding site (IPR020833),Lipoxygenase%2C conserved site (IPR020834);NIAS_FLcDNA=J065158A06;Manual Curation=October 30%2C 2020;Literature_PMID=19656341;Oryzabase=10256;TENOR=Os08t0508800-01;KEGG=Os08t0508800-01 (EC:1.13.11.12);Subcellular location=chloroplast (GO:0009507)
Chr08	irgsp1_rep	five_prime_UTR	25223938	25224078	.	-	.	Parent=Os08t0508800-01
Chr08	irgsp1_rep	CDS	25223562	25223937	.	-	0	Parent=Os08t0508800-01
Chr08	irgsp1_rep	CDS	25222572	25222867	.	-	2	Parent=Os08t0508800-01
Chr08	irgsp1_rep	CDS	25218993	25219233	.	-	0	Parent=Os08t0508800-01
Chr08	irgsp1_rep	CDS	25218429	25218761	.	-	2	Parent=Os08t0508800-01
Chr08	irgsp1_rep	CDS	25218247	25218332	.	-	2	Parent=Os08t0508800-01
Chr08	irgsp1_rep	CDS	25216696	25218138	.	-	0	Parent=Os08t0508800-01
Chr08	irgsp1_rep	three_prime_UTR	25216460	25216695	.	-	.	Parent=Os08t0508800-01
Chr08	irgsp1_rep	mRNA	25241037	25250038	.	+	.	ID=Os08t0509100-01;Name=Os08t0509100-01;Locus_id=Os08g0509100;CGSNL Gene Symbol=LOX8;CGSNL Gene Name=LIPOXYGENASE 8;Oryzabase Gene Symbol Synonym(s)=OsLOX8%2C OsLOX9%2C LOX9%2C OsLOX2%3B3%2C LOX2%3B3%2C OsLOX2;Oryzabase Gene Name Synonym(s)=lipoxygenase 8%2C lipoxygenase 9;Note=Similar to Lipoxygenase%2C chloroplast precursor (EC 1.13.11.12).;Transcript_evidence=AK066825 (DDBJ%2C Best hit);ORF_evidence=A3BUP8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: protein binding (GO:0005515),Molecular Function: lipoxygenase activity (GO:0016165),Molecular Function: oxidoreductase activity%2C acting on single donors with incorporation of molecular oxygen%2C incorporation of two atoms of oxygen (GO:0016702),Molecular Function: metal ion binding (GO:0046872);InterPro=Lipoxygenase (IPR000907),Lipoxygenase%2C LH2 (IPR001024),Lipoxygenase%2C plant (IPR001246),Lipase/lipooxygenase%2C PLAT/LH2 (IPR008976),Lipoxygenase%2C C-terminal (IPR013819),Lipoxygenase%2C iron binding site (IPR020833),Lipoxygenase%2C conserved site (IPR020834);NIAS_FLcDNA=J013075A10;Oryzabase=10392;Expression=AK066825;TENOR=Os08t0509100-01;KEGG=Os08t0509100-01 (EC:1.13.11.12)
Chr08	irgsp1_rep	five_prime_UTR	25241037	25241182	.	+	.	Parent=Os08t0509100-01
Chr08	irgsp1_rep	CDS	25241183	25241612	.	+	0	Parent=Os08t0509100-01
Chr08	irgsp1_rep	CDS	25245769	25246061	.	+	2	Parent=Os08t0509100-01
Chr08	irgsp1_rep	CDS	25247245	25247485	.	+	0	Parent=Os08t0509100-01
Chr08	irgsp1_rep	CDS	25247765	25248097	.	+	2	Parent=Os08t0509100-01
Chr08	irgsp1_rep	CDS	25248182	25248267	.	+	2	Parent=Os08t0509100-01
Chr08	irgsp1_rep	CDS	25248375	25249817	.	+	0	Parent=Os08t0509100-01
Chr08	irgsp1_rep	three_prime_UTR	25249818	25250038	.	+	.	Parent=Os08t0509100-01
Chr08	irgsp1_rep	mRNA	25241038	25246140	.	+	.	ID=Os08t0509100-02;Name=Os08t0509100-02;Locus_id=Os08g0509100;CGSNL Gene Symbol=LOX8;CGSNL Gene Name=LIPOXYGENASE 8;Oryzabase Gene Symbol Synonym(s)=OsLOX8%2C OsLOX9%2C LOX9%2C OsLOX2%3B3%2C LOX2%3B3%2C OsLOX2;Oryzabase Gene Name Synonym(s)=lipoxygenase 8%2C lipoxygenase 9;Note=Similar to Lipoxygenase.;Transcript_evidence=AK072722 (DDBJ%2C Best hit);ORF_evidence=A3BUP8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: protein binding (GO:0005515),Molecular Function: oxidoreductase activity%2C acting on single donors with incorporation of molecular oxygen%2C incorporation of two atoms of oxygen (GO:0016702),Molecular Function: metal ion binding (GO:0046872);InterPro=Lipoxygenase (IPR000907),Lipoxygenase%2C LH2 (IPR001024),Lipase/lipooxygenase%2C PLAT/LH2 (IPR008976);NIAS_FLcDNA=J023138I11;Oryzabase=10392;Expression=AK072722;TENOR=Os08t0509100-02;KEGG=Os08t0509100-02 (EC:1.13.11.12)
Chr08	irgsp1_rep	five_prime_UTR	25241038	25241182	.	+	.	Parent=Os08t0509100-02
Chr08	irgsp1_rep	CDS	25241183	25241612	.	+	0	Parent=Os08t0509100-02
Chr08	irgsp1_rep	CDS	25245769	25246073	.	+	2	Parent=Os08t0509100-02
Chr08	irgsp1_rep	three_prime_UTR	25246074	25246140	.	+	.	Parent=Os08t0509100-02
Chr08	irgsp1_rep	mRNA	25250383	25254656	.	-	.	ID=Os08t0509200-01;Name=Os08t0509200-01;Locus_id=Os08g0509200;CGSNL Gene Symbol=BGLU27;CGSNL Gene Name=BETA-GLUCOSIDASE 27;Oryzabase Gene Symbol Synonym(s)=Os8bglu27%2C OsBGlu27;Oryzabase Gene Name Synonym(s)=beta-glucosidase 27;Note=Similar to Beta-primeverosidase (EC 3.2.1.149).;Transcript_evidence=AK067001 (DDBJ%2C Best hit);ORF_evidence=Q84YK7 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 1%2C active site (IPR018120);NIAS_FLcDNA=J013092F09;Oryzabase=12100;Expression=AK067001;TENOR=Os08t0509200-01;KEGG=Os08t0509200-01 (EC:3.2.1.149)
Chr08	irgsp1_rep	five_prime_UTR	25254488	25254656	.	-	.	Parent=Os08t0509200-01
Chr08	irgsp1_rep	CDS	25254359	25254487	.	-	0	Parent=Os08t0509200-01
Chr08	irgsp1_rep	CDS	25254118	25254184	.	-	0	Parent=Os08t0509200-01
Chr08	irgsp1_rep	CDS	25253958	25254016	.	-	2	Parent=Os08t0509200-01
Chr08	irgsp1_rep	CDS	25253783	25253858	.	-	0	Parent=Os08t0509200-01
Chr08	irgsp1_rep	CDS	25253375	25253452	.	-	2	Parent=Os08t0509200-01
Chr08	irgsp1_rep	CDS	25253158	25253245	.	-	2	Parent=Os08t0509200-01
Chr08	irgsp1_rep	CDS	25252391	25252646	.	-	1	Parent=Os08t0509200-01
Chr08	irgsp1_rep	CDS	25252190	25252305	.	-	0	Parent=Os08t0509200-01
Chr08	irgsp1_rep	CDS	25251647	25251867	.	-	1	Parent=Os08t0509200-01
Chr08	irgsp1_rep	CDS	25251515	25251546	.	-	2	Parent=Os08t0509200-01
Chr08	irgsp1_rep	CDS	25251288	25251390	.	-	0	Parent=Os08t0509200-01
Chr08	irgsp1_rep	CDS	25251026	25251134	.	-	2	Parent=Os08t0509200-01
Chr08	irgsp1_rep	CDS	25250758	25250923	.	-	1	Parent=Os08t0509200-01
Chr08	irgsp1_rep	three_prime_UTR	25250383	25250757	.	-	.	Parent=Os08t0509200-01
Chr08	irgsp1_rep	mRNA	25250329	25254599	.	-	.	ID=Os08t0509200-02;Name=Os08t0509200-02;Locus_id=Os08g0509200;CGSNL Gene Symbol=BGLU27;CGSNL Gene Name=BETA-GLUCOSIDASE 27;Oryzabase Gene Symbol Synonym(s)=Os8bglu27%2C OsBGlu27;Oryzabase Gene Name Synonym(s)=beta-glucosidase 27;Note=Similar to Beta-glucosidase isozyme 2.;Transcript_evidence=AK120430 (DDBJ%2C Best hit),AK067231 (DDBJ%2C Best hit);ORF_evidence=Q84YK7 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 1%2C active site (IPR018120);NIAS_FLcDNA=J013095M12,J013095O12;Oryzabase=12100;Expression=AK120430;TENOR=Os08t0509200-02;KEGG=Os08t0509200-02
Chr08	irgsp1_rep	five_prime_UTR	25254488	25254599	.	-	.	Parent=Os08t0509200-02
Chr08	irgsp1_rep	CDS	25254359	25254487	.	-	0	Parent=Os08t0509200-02
Chr08	irgsp1_rep	CDS	25254118	25254184	.	-	0	Parent=Os08t0509200-02
Chr08	irgsp1_rep	CDS	25253958	25254016	.	-	2	Parent=Os08t0509200-02
Chr08	irgsp1_rep	CDS	25253783	25253858	.	-	0	Parent=Os08t0509200-02
Chr08	irgsp1_rep	CDS	25253375	25253452	.	-	2	Parent=Os08t0509200-02
Chr08	irgsp1_rep	CDS	25253158	25253245	.	-	2	Parent=Os08t0509200-02
Chr08	irgsp1_rep	CDS	25252391	25252646	.	-	1	Parent=Os08t0509200-02
Chr08	irgsp1_rep	CDS	25252190	25252305	.	-	0	Parent=Os08t0509200-02
Chr08	irgsp1_rep	CDS	25251647	25251867	.	-	1	Parent=Os08t0509200-02
Chr08	irgsp1_rep	CDS	25251515	25251546	.	-	2	Parent=Os08t0509200-02
Chr08	irgsp1_rep	CDS	25251288	25251390	.	-	0	Parent=Os08t0509200-02
Chr08	irgsp1_rep	CDS	25251022	25251134	.	-	2	Parent=Os08t0509200-02
Chr08	irgsp1_rep	three_prime_UTR	25250329	25251021	.	-	.	Parent=Os08t0509200-02
Chr08	irgsp1_rep	mRNA	25250757	25254475	.	+	.	ID=Os08t0509300-00;Name=Os08t0509300-00;Locus_id=Os08g0509300;Note=Hypothetical protein.;Transcript_evidence=tplb0037o13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0509300-00
Chr08	irgsp1_rep	five_prime_UTR	25250757	25250893	.	+	.	Parent=Os08t0509300-00
Chr08	irgsp1_rep	five_prime_UTR	25250994	25251130	.	+	.	Parent=Os08t0509300-00
Chr08	irgsp1_rep	five_prime_UTR	25251284	25251402	.	+	.	Parent=Os08t0509300-00
Chr08	irgsp1_rep	five_prime_UTR	25251628	25251857	.	+	.	Parent=Os08t0509300-00
Chr08	irgsp1_rep	five_prime_UTR	25252182	25252279	.	+	.	Parent=Os08t0509300-00
Chr08	irgsp1_rep	CDS	25252280	25252300	.	+	0	Parent=Os08t0509300-00
Chr08	irgsp1_rep	CDS	25252376	25252588	.	+	0	Parent=Os08t0509300-00
Chr08	irgsp1_rep	three_prime_UTR	25252589	25252630	.	+	.	Parent=Os08t0509300-00
Chr08	irgsp1_rep	three_prime_UTR	25253142	25253226	.	+	.	Parent=Os08t0509300-00
Chr08	irgsp1_rep	three_prime_UTR	25253360	25253450	.	+	.	Parent=Os08t0509300-00
Chr08	irgsp1_rep	three_prime_UTR	25253781	25253846	.	+	.	Parent=Os08t0509300-00
Chr08	irgsp1_rep	three_prime_UTR	25253949	25254053	.	+	.	Parent=Os08t0509300-00
Chr08	irgsp1_rep	three_prime_UTR	25254322	25254475	.	+	.	Parent=Os08t0509300-00
Chr08	irgsp1_rep	mRNA	25260150	25266935	.	-	.	ID=Os08t0509400-01;Name=Os08t0509400-01;Locus_id=Os08g0509400;CGSNL Gene Symbol=BGLU28;CGSNL Gene Name=BETA-GLUCOSIDASE 28;Oryzabase Gene Symbol Synonym(s)=Os8bglu28%2C OsBGlu28;Oryzabase Gene Name Synonym(s)=beta-glucosidase 28;Note=Similar to Amygdalin hydrolase isoform AH I precursor (EC 3.2.1.117).;Transcript_evidence=AK059210 (DDBJ%2C Best hit),AK098938 (DDBJ%2C Best hit),AK105908 (DDBJ%2C Best hit);ORF_evidence=Q7EXZ4 (UniProt);NIAS_FLcDNA=001-024-B10,J013038D01,001-204-G05;Oryzabase=12101;TENOR=Os08t0509400-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	25266903	25266935	.	-	.	Parent=Os08t0509400-01
Chr08	irgsp1_rep	CDS	25266768	25266902	.	-	0	Parent=Os08t0509400-01
Chr08	irgsp1_rep	CDS	25266583	25266643	.	-	0	Parent=Os08t0509400-01
Chr08	irgsp1_rep	CDS	25266349	25266407	.	-	2	Parent=Os08t0509400-01
Chr08	irgsp1_rep	CDS	25266192	25266267	.	-	0	Parent=Os08t0509400-01
Chr08	irgsp1_rep	CDS	25265987	25266065	.	-	2	Parent=Os08t0509400-01
Chr08	irgsp1_rep	CDS	25265774	25265860	.	-	1	Parent=Os08t0509400-01
Chr08	irgsp1_rep	CDS	25264824	25265420	.	-	1	Parent=Os08t0509400-01
Chr08	irgsp1_rep	CDS	25263488	25263518	.	-	1	Parent=Os08t0509400-01
Chr08	irgsp1_rep	CDS	25263263	25263365	.	-	0	Parent=Os08t0509400-01
Chr08	irgsp1_rep	CDS	25262815	25262923	.	-	2	Parent=Os08t0509400-01
Chr08	irgsp1_rep	CDS	25260417	25260582	.	-	1	Parent=Os08t0509400-01
Chr08	irgsp1_rep	three_prime_UTR	25260150	25260416	.	-	.	Parent=Os08t0509400-01
Chr08	irgsp1_rep	mRNA	25260163	25260381	.	-	.	ID=Os08t0509400-02;Name=Os08t0509400-02;Locus_id=Os08g0509400;CGSNL Gene Symbol=BGLU28;CGSNL Gene Name=BETA-GLUCOSIDASE 28;Oryzabase Gene Symbol Synonym(s)=Os8bglu28%2C OsBGlu28;Oryzabase Gene Name Synonym(s)=beta-glucosidase 28;Note=Non-protein coding transcript.;Transcript_evidence=AK060593 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-024-E08;Oryzabase=12101;TENOR=Os08t0509400-02
Chr08	irgsp1_rep	exon	25260163	25260381	.	-	.	Parent=Os08t0509400-02
Chr08	irgsp1_rep	mRNA	25260402	25266410	.	+	.	ID=Os08t0509450-00;Name=Os08t0509450-00;Locus_id=Os08g0509450;Note=Hypothetical protein.;Transcript_evidence=tplb0037o13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0509450-00
Chr08	irgsp1_rep	five_prime_UTR	25260402	25260575	.	+	.	Parent=Os08t0509450-00
Chr08	irgsp1_rep	five_prime_UTR	25262808	25262919	.	+	.	Parent=Os08t0509450-00
Chr08	irgsp1_rep	five_prime_UTR	25263259	25263357	.	+	.	Parent=Os08t0509450-00
Chr08	irgsp1_rep	five_prime_UTR	25264786	25264789	.	+	.	Parent=Os08t0509450-00
Chr08	irgsp1_rep	CDS	25264790	25265362	.	+	0	Parent=Os08t0509450-00
Chr08	irgsp1_rep	three_prime_UTR	25265363	25265413	.	+	.	Parent=Os08t0509450-00
Chr08	irgsp1_rep	three_prime_UTR	25265766	25265879	.	+	.	Parent=Os08t0509450-00
Chr08	irgsp1_rep	three_prime_UTR	25266140	25266247	.	+	.	Parent=Os08t0509450-00
Chr08	irgsp1_rep	three_prime_UTR	25266334	25266410	.	+	.	Parent=Os08t0509450-00
Chr08	irgsp1_rep	mRNA	25270058	25273628	.	+	.	ID=Os08t0509500-01;Name=Os08t0509500-01;Locus_id=Os08g0509500;Note=D111/G-patch domain containing protein.;Transcript_evidence=AK068450 (DDBJ%2C Best hit);ORF_evidence=B6U4M2 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676);InterPro=D111/G-patch (IPR000467);NIAS_FLcDNA=J013151M13;Expression=AK068450;TENOR=Os08t0509500-01;KEGG=Os08t0509500-01
Chr08	irgsp1_rep	five_prime_UTR	25270058	25270116	.	+	.	Parent=Os08t0509500-01
Chr08	irgsp1_rep	CDS	25270117	25270734	.	+	0	Parent=Os08t0509500-01
Chr08	irgsp1_rep	CDS	25272550	25272615	.	+	0	Parent=Os08t0509500-01
Chr08	irgsp1_rep	CDS	25272823	25272882	.	+	0	Parent=Os08t0509500-01
Chr08	irgsp1_rep	three_prime_UTR	25272883	25272926	.	+	.	Parent=Os08t0509500-01
Chr08	irgsp1_rep	three_prime_UTR	25273102	25273628	.	+	.	Parent=Os08t0509500-01
Chr08	irgsp1_rep	mRNA	25274541	25278696	.	-	.	ID=Os08t0509600-01;Name=Os08t0509600-01;Locus_id=Os08g0509600;RAP-DB Gene Symbol Synonym(s)=WFP%2C OsSPL14%2C SPL14%2C IPA1%2C WFP/IPA1;RAP-DB Gene Name Synonym(s)=WEALTHY FARMER'S PANICLE%2C IDEAL PLANT ARCHITECTURE 1%2C Ideal Plant Architecture 1%2C Ideal Plant Architecture1%2C Squamosa promoter-binding-like protein 14%2C SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 14%2C Squamosa promoter binding protein like-14%2C IDEAL PLANT ARCHITECTURE1;CGSNL Gene Symbol=WFP;CGSNL Gene Name=WEALTHY FARMER'S PANICLE;Oryzabase Gene Symbol Synonym(s)=OsSPL14%2C SPL14%2C IPA1%2C WFP/IPA1%2C OsSPL14/WFP/IPA1%2C OsIPA1%2C IPA1/OsSPL14;Oryzabase Gene Name Synonym(s)=IDEAL PLANT ARCHITECTURE 1%2C Ideal Plant Architecture 1%2C Ideal Plant Architecture1%2C Squamosa promoter-binding-like protein 14%2C SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 14%2C Squamosa promoter binding protein like-14%2C IDEAL PLANT ARCHITECTURE1;Note=Squamosa promter-binding-like transcription activator%2C Regulation of branching in panicles and vegetative shoots%2C Semidominant regulator of plant architecture;Transcript_evidence=AK107191;ORF_evidence=Q7EXZ2,B7F043;GO=Molecular Function: DNA binding (GO:0003677),Cellular Component: nucleus (GO:0005634);InterPro=Transcription factor%2C SBP-box (IPR004333);NIAS_FLcDNA=002-125-A04;Manual Curation=March 13%2C 2014;Literature_PMID=16861571,20495564,20495565,24170127;Oryzabase=8877;TENOR=Os08t0509600-01;KEGG=Os08t0509600-01
Chr08	irgsp1_rep	five_prime_UTR	25278574	25278696	.	-	.	Parent=Os08t0509600-01
Chr08	irgsp1_rep	CDS	25278125	25278573	.	-	0	Parent=Os08t0509600-01
Chr08	irgsp1_rep	CDS	25275561	25275694	.	-	1	Parent=Os08t0509600-01
Chr08	irgsp1_rep	CDS	25274788	25275458	.	-	2	Parent=Os08t0509600-01
Chr08	irgsp1_rep	three_prime_UTR	25274541	25274787	.	-	.	Parent=Os08t0509600-01
Chr08	irgsp1_rep	mRNA	25310647	25311749	.	-	.	ID=Os08t0510101-00;Name=Os08t0510101-00;Locus_id=Os08g0510101;Note=Similar to polygalacturonase inhibitor 1.;Transcript_evidence=EU962279 (DDBJ);ORF_evidence=NP_001149155.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);TENOR=Os08t0510101-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	25311668	25311749	.	-	.	Parent=Os08t0510101-00
Chr08	irgsp1_rep	CDS	25311273	25311667	.	-	0	Parent=Os08t0510101-00
Chr08	irgsp1_rep	CDS	25310929	25311070	.	-	1	Parent=Os08t0510101-00
Chr08	irgsp1_rep	three_prime_UTR	25310647	25310928	.	-	.	Parent=Os08t0510101-00
Chr08	irgsp1_rep	mRNA	25313546	25318570	.	+	.	ID=Os08t0510300-01;Name=Os08t0510300-01;Locus_id=Os08g0510300;CGSNL Gene Symbol=HAK26;CGSNL Gene Name=HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 26;Oryzabase Gene Symbol Synonym(s)=OsHAK26;Oryzabase Gene Name Synonym(s)=High-affinity Potassium(K+) Transporter 26%2C Potassium transporter 26;Note=Potassium uptake protein%2C kup domain containing protein.;Transcript_evidence=AK072472 (DDBJ%2C Best hit);ORF_evidence=Q84YJ9 (UniProt);GO=Biological Process: potassium ion transmembrane transport (GO:0071805),Cellular Component: membrane (GO:0016020),Molecular Function: potassium ion transmembrane transporter activity (GO:0015079);InterPro=K+ potassium transporter (IPR003855);NIAS_FLcDNA=J023119J10;Oryzabase=8680;Expression=AK072472;TENOR=Os08t0510300-01;KEGG=Os08t0510300-01
Chr08	irgsp1_rep	five_prime_UTR	25313546	25313608	.	+	.	Parent=Os08t0510300-01
Chr08	irgsp1_rep	CDS	25313609	25313809	.	+	0	Parent=Os08t0510300-01
Chr08	irgsp1_rep	CDS	25313951	25314173	.	+	0	Parent=Os08t0510300-01
Chr08	irgsp1_rep	CDS	25315172	25315417	.	+	2	Parent=Os08t0510300-01
Chr08	irgsp1_rep	CDS	25315878	25315928	.	+	2	Parent=Os08t0510300-01
Chr08	irgsp1_rep	CDS	25316046	25316306	.	+	2	Parent=Os08t0510300-01
Chr08	irgsp1_rep	CDS	25316401	25316453	.	+	2	Parent=Os08t0510300-01
Chr08	irgsp1_rep	CDS	25316534	25316903	.	+	0	Parent=Os08t0510300-01
Chr08	irgsp1_rep	CDS	25317310	25318124	.	+	2	Parent=Os08t0510300-01
Chr08	irgsp1_rep	three_prime_UTR	25318125	25318570	.	+	.	Parent=Os08t0510300-01
Chr08	irgsp1_rep	mRNA	25319041	25320717	.	-	.	ID=Os08t0510400-01;Name=Os08t0510400-01;Locus_id=Os08g0510400;Oryzabase Gene Name Synonym(s)=ketoacyIACP reductase;Note=Short-chain dehydrogenase/reductase SDR domain containing protein.;Transcript_evidence=AK069393 (DDBJ%2C Best hit);ORF_evidence=B6UEX0 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Polyketide synthase/Fatty acid synthase%2C KR (IPR020842);NIAS_FLcDNA=J023012H05;Oryzabase=21584;Expression=AK069393;TENOR=Os08t0510400-01;KEGG=Os08t0510400-01
Chr08	irgsp1_rep	five_prime_UTR	25320669	25320717	.	-	.	Parent=Os08t0510400-01
Chr08	irgsp1_rep	CDS	25320323	25320668	.	-	0	Parent=Os08t0510400-01
Chr08	irgsp1_rep	CDS	25319496	25319725	.	-	2	Parent=Os08t0510400-01
Chr08	irgsp1_rep	CDS	25319134	25319412	.	-	0	Parent=Os08t0510400-01
Chr08	irgsp1_rep	three_prime_UTR	25319041	25319133	.	-	.	Parent=Os08t0510400-01
Chr08	irgsp1_rep	mRNA	25321532	25325533	.	+	.	ID=Os08t0510500-01;Name=Os08t0510500-01;Locus_id=Os08g0510500;Note=ENT domain containing protein.;Transcript_evidence=AK070907 (DDBJ%2C Best hit);ORF_evidence=B8BCB7 (UniProt);InterPro=EMSY N-terminal (IPR005491);NIAS_FLcDNA=J023064G17;Expression=AK070907;TENOR=Os08t0510500-01;KEGG=Os08t0510500-01
Chr08	irgsp1_rep	five_prime_UTR	25321532	25321810	.	+	.	Parent=Os08t0510500-01
Chr08	irgsp1_rep	CDS	25321811	25321838	.	+	0	Parent=Os08t0510500-01
Chr08	irgsp1_rep	CDS	25322513	25322697	.	+	2	Parent=Os08t0510500-01
Chr08	irgsp1_rep	CDS	25322781	25322890	.	+	0	Parent=Os08t0510500-01
Chr08	irgsp1_rep	CDS	25322998	25323151	.	+	1	Parent=Os08t0510500-01
Chr08	irgsp1_rep	CDS	25323831	25323998	.	+	0	Parent=Os08t0510500-01
Chr08	irgsp1_rep	CDS	25324079	25324141	.	+	0	Parent=Os08t0510500-01
Chr08	irgsp1_rep	CDS	25324254	25324317	.	+	0	Parent=Os08t0510500-01
Chr08	irgsp1_rep	CDS	25325045	25325091	.	+	2	Parent=Os08t0510500-01
Chr08	irgsp1_rep	three_prime_UTR	25325092	25325533	.	+	.	Parent=Os08t0510500-01
Chr08	irgsp1_rep	mRNA	25321582	25325539	.	+	.	ID=Os08t0510500-02;Name=Os08t0510500-02;Locus_id=Os08g0510500;Note=ENT domain containing protein.;Transcript_evidence=AK100370 (DDBJ%2C Best hit);ORF_evidence=B8BCB7 (UniProt);InterPro=EMSY N-terminal (IPR005491);NIAS_FLcDNA=J023084F16;Expression=AK100370;TENOR=Os08t0510500-02;KEGG=Os08t0510500-02
Chr08	irgsp1_rep	five_prime_UTR	25321582	25321810	.	+	.	Parent=Os08t0510500-02
Chr08	irgsp1_rep	CDS	25321811	25321838	.	+	0	Parent=Os08t0510500-02
Chr08	irgsp1_rep	CDS	25322513	25322697	.	+	2	Parent=Os08t0510500-02
Chr08	irgsp1_rep	CDS	25322781	25322890	.	+	0	Parent=Os08t0510500-02
Chr08	irgsp1_rep	CDS	25322998	25323151	.	+	1	Parent=Os08t0510500-02
Chr08	irgsp1_rep	CDS	25323831	25323998	.	+	0	Parent=Os08t0510500-02
Chr08	irgsp1_rep	CDS	25324079	25324141	.	+	0	Parent=Os08t0510500-02
Chr08	irgsp1_rep	CDS	25324254	25324317	.	+	0	Parent=Os08t0510500-02
Chr08	irgsp1_rep	CDS	25325045	25325091	.	+	2	Parent=Os08t0510500-02
Chr08	irgsp1_rep	three_prime_UTR	25325092	25325539	.	+	.	Parent=Os08t0510500-02
Chr08	irgsp1_rep	mRNA	25325664	25325736	.	+	.	ID=Os08t0510601-00;Name=Os08t0510601-00;Locus_id=Os08g0510601;Note=Non-protein coding transcript.;Transcript_evidence=X02683 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0510601-00
Chr08	irgsp1_rep	exon	25325664	25325736	.	+	.	Parent=Os08t0510601-00
Chr08	irgsp1_rep	mRNA	25326021	25329360	.	-	.	ID=Os08t0510700-01;Name=Os08t0510700-01;Locus_id=Os08g0510700;Oryzabase Gene Name Synonym(s)=MYB transcription factor;Note=Homeodomain-like containing protein.;Transcript_evidence=AK101254 (DDBJ%2C Best hit);ORF_evidence=A2YWX5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Bromodomain (IPR001487),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),MYB-like (IPR017877);NIAS_FLcDNA=J033032F20;Oryzabase=16195;Expression=AK101254;TENOR=Os08t0510700-01;KEGG=Os08t0510700-01
Chr08	irgsp1_rep	five_prime_UTR	25329190	25329360	.	-	.	Parent=Os08t0510700-01
Chr08	irgsp1_rep	CDS	25328786	25329189	.	-	0	Parent=Os08t0510700-01
Chr08	irgsp1_rep	CDS	25328035	25328605	.	-	1	Parent=Os08t0510700-01
Chr08	irgsp1_rep	CDS	25326385	25327392	.	-	0	Parent=Os08t0510700-01
Chr08	irgsp1_rep	three_prime_UTR	25326021	25326384	.	-	.	Parent=Os08t0510700-01
Chr08	irgsp1_rep	mRNA	25328622	25329352	.	-	.	ID=Os08t0510700-02;Name=Os08t0510700-02;Locus_id=Os08g0510700;Oryzabase Gene Name Synonym(s)=MYB transcription factor;Note=Hypothetical conserved gene.;Transcript_evidence=AK111116 (DDBJ%2C Best hit);ORF_evidence=Q7EXY8 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),MYB-like (IPR017877);NIAS_FLcDNA=002-176-B09;Oryzabase=16195;Expression=AK111116;TENOR=Os08t0510700-02;KEGG=Os08t0510700-02
Chr08	irgsp1_rep	five_prime_UTR	25329190	25329352	.	-	.	Parent=Os08t0510700-02
Chr08	irgsp1_rep	CDS	25328782	25329189	.	-	0	Parent=Os08t0510700-02
Chr08	irgsp1_rep	three_prime_UTR	25328622	25328781	.	-	.	Parent=Os08t0510700-02
Chr08	irgsp1_rep	mRNA	25328200	25329156	.	+	.	ID=Os08t0510750-00;Name=Os08t0510750-00;Locus_id=Os08g0510750;Note=Hypothetical gene.;Transcript_evidence=EU975368 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0510750-00;KEGG=Os08t0510750-00
Chr08	irgsp1_rep	five_prime_UTR	25328200	25328302	.	+	.	Parent=Os08t0510750-00
Chr08	irgsp1_rep	CDS	25328303	25328480	.	+	0	Parent=Os08t0510750-00
Chr08	irgsp1_rep	CDS	25328555	25328595	.	+	2	Parent=Os08t0510750-00
Chr08	irgsp1_rep	three_prime_UTR	25328596	25328684	.	+	.	Parent=Os08t0510750-00
Chr08	irgsp1_rep	three_prime_UTR	25328795	25329156	.	+	.	Parent=Os08t0510750-00
Chr08	irgsp1_rep	mRNA	25333011	25334433	.	-	.	ID=Os08t0510800-01;Name=Os08t0510800-01;Locus_id=Os08g0510800;Note=Conserved hypothetical protein.;Transcript_evidence=AK072063 (DDBJ%2C Best hit),AK106031 (DDBJ%2C Best hit);ORF_evidence=A2YWX6 (UniProt);NIAS_FLcDNA=J013110D22,001-206-D03;Expression=AK072063;TENOR=Os08t0510800-01;KEGG=Os08t0510800-01
Chr08	irgsp1_rep	five_prime_UTR	25334290	25334433	.	-	.	Parent=Os08t0510800-01
Chr08	irgsp1_rep	CDS	25333153	25334289	.	-	0	Parent=Os08t0510800-01
Chr08	irgsp1_rep	three_prime_UTR	25333011	25333152	.	-	.	Parent=Os08t0510800-01
Chr08	irgsp1_rep	mRNA	25341100	25343949	.	+	.	ID=Os08t0510900-01;Name=Os08t0510900-01;Locus_id=Os08g0510900;Note=Nse4 domain containing protein.;Transcript_evidence=AK069250 (DDBJ%2C Best hit);ORF_evidence=B8BCB8 (UniProt);InterPro=Nse4 (IPR014854);NIAS_FLcDNA=J023013O18;Expression=AK069250;TENOR=Os08t0510900-01;KEGG=Os08t0510900-01
Chr08	irgsp1_rep	five_prime_UTR	25341100	25341102	.	+	.	Parent=Os08t0510900-01
Chr08	irgsp1_rep	CDS	25341103	25341325	.	+	0	Parent=Os08t0510900-01
Chr08	irgsp1_rep	CDS	25341475	25341546	.	+	2	Parent=Os08t0510900-01
Chr08	irgsp1_rep	CDS	25342158	25342401	.	+	2	Parent=Os08t0510900-01
Chr08	irgsp1_rep	CDS	25342500	25342587	.	+	1	Parent=Os08t0510900-01
Chr08	irgsp1_rep	CDS	25342973	25343195	.	+	0	Parent=Os08t0510900-01
Chr08	irgsp1_rep	CDS	25343315	25343406	.	+	2	Parent=Os08t0510900-01
Chr08	irgsp1_rep	CDS	25343535	25343786	.	+	0	Parent=Os08t0510900-01
Chr08	irgsp1_rep	three_prime_UTR	25343787	25343949	.	+	.	Parent=Os08t0510900-01
Chr08	irgsp1_rep	mRNA	25344705	25346336	.	+	.	ID=Os08t0511000-01;Name=Os08t0511000-01;Locus_id=Os08g0511000;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK107578 (DDBJ%2C Best hit);ORF_evidence=B9G1R2 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-130-D12;Expression=AK107578;TENOR=Os08t0511000-01;KEGG=Os08t0511000-01
Chr08	irgsp1_rep	five_prime_UTR	25344705	25344736	.	+	.	Parent=Os08t0511000-01
Chr08	irgsp1_rep	CDS	25344737	25346275	.	+	0	Parent=Os08t0511000-01
Chr08	irgsp1_rep	three_prime_UTR	25346276	25346336	.	+	.	Parent=Os08t0511000-01
Chr08	irgsp1_rep	mRNA	25351576	25353815	.	-	.	ID=Os08t0511200-01;Name=Os08t0511200-01;Locus_id=Os08g0511200;RAP-DB Gene Symbol Synonym(s)=OsCUC3;RAP-DB Gene Name Synonym(s)=CUP-SHAPED COTYLEDON 3;CGSNL Gene Symbol=CUC3;CGSNL Gene Name=CUP-SHAPED COTYLEDON 3;Oryzabase Gene Symbol Synonym(s)=OsCUC3%2C ONAC107%2C NAC107%2C DLN214%2C OsDLN214;Oryzabase Gene Name Synonym(s)=cup-shaped cotyledon 3%2C NAC domain-containing protein 107%2C CUP-SHAPED COTYLEDON3%2C DLN repressor 214%2C DLN motif protein 214;Note=NAC protein%2C Homolog of Arabidopsis CUC3%2C Control of meristem/organ boundary specification;Transcript_evidence=AK375432 (domesticated barley);ORF_evidence=A0A0P0XHX1;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=NAC domain superfamily (IPR036093),NAC domain (IPR003441);Manual Curation=September 24%2C 2020;Literature_PMID=32964416;Oryzabase=6118;TENOR=Os08t0511200-00;Subcellular location=nucleus (GO:0005634)
Chr08	irgsp1_rep	five_prime_UTR	25353775	25353815	.	-	.	Parent=Os08t0511200-01
Chr08	irgsp1_rep	CDS	25353253	25353774	.	-	0	Parent=Os08t0511200-01
Chr08	irgsp1_rep	CDS	25351880	25352401	.	-	0	Parent=Os08t0511200-01
Chr08	irgsp1_rep	three_prime_UTR	25351576	25351879	.	-	.	Parent=Os08t0511200-01
Chr08	irgsp1_rep	mRNA	25366387	25367226	.	-	.	ID=Os08t0511400-01;Name=Os08t0511400-01;Locus_id=Os08g0511400;Note=Conserved hypothetical protein.;Transcript_evidence=AK069673 (DDBJ%2C Best hit);ORF_evidence=A2YWY3 (UniProt);NIAS_FLcDNA=J023027A22;Expression=AK069673;TENOR=Os08t0511400-01;KEGG=Os08t0511400-01
Chr08	irgsp1_rep	five_prime_UTR	25367226	25367226	.	-	.	Parent=Os08t0511400-01
Chr08	irgsp1_rep	CDS	25366704	25367225	.	-	0	Parent=Os08t0511400-01
Chr08	irgsp1_rep	three_prime_UTR	25366387	25366703	.	-	.	Parent=Os08t0511400-01
Chr08	irgsp1_rep	mRNA	25370038	25374002	.	+	.	ID=Os08t0511500-01;Name=Os08t0511500-01;Locus_id=Os08g0511500;Note=Conserved hypothetical protein.;Transcript_evidence=AK289203 (DDBJ%2C Best hit);ORF_evidence=NP_001051916.1 (RefSeq);NIAS_FLcDNA=J100052B01;TENOR=Os08t0511500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	25370038	25370912	.	+	.	Parent=Os08t0511500-01
Chr08	irgsp1_rep	five_prime_UTR	25371014	25371054	.	+	.	Parent=Os08t0511500-01
Chr08	irgsp1_rep	CDS	25371055	25371065	.	+	0	Parent=Os08t0511500-01
Chr08	irgsp1_rep	CDS	25371958	25372002	.	+	1	Parent=Os08t0511500-01
Chr08	irgsp1_rep	CDS	25372856	25373018	.	+	1	Parent=Os08t0511500-01
Chr08	irgsp1_rep	CDS	25373679	25373765	.	+	0	Parent=Os08t0511500-01
Chr08	irgsp1_rep	three_prime_UTR	25373766	25374002	.	+	.	Parent=Os08t0511500-01
Chr08	irgsp1_rep	mRNA	25374905	25375277	.	-	.	ID=Os08t0511600-00;Name=Os08t0511600-00;Locus_id=Os08g0511600;Note=Conserved hypothetical protein.;Transcript_evidence=EU971265 (DDBJ);ORF_evidence=Q7EXZ8 (UniProt);TENOR=Os08t0511600-00
Chr08	irgsp1_rep	five_prime_UTR	25375277	25375277	.	-	.	Parent=Os08t0511600-00
Chr08	irgsp1_rep	CDS	25374905	25375276	.	-	0	Parent=Os08t0511600-00
Chr08	irgsp1_rep	mRNA	25377754	25380592	.	-	.	ID=Os08t0511700-00;Name=Os08t0511700-00;Locus_id=Os08g0511700;CGSNL Gene Symbol=PI55-1;CGSNL Gene Name=PYRICULARIA ORYZAE RESISTANCE 55-1;Oryzabase Gene Symbol Synonym(s)=pi55-1%2C pi55(t)%2C OsIRL4;Oryzabase Gene Name Synonym(s)=Pyricularia oryzae resistance 55-1%2C Magnaporthe grisea resistance 55-1%2C Blast resistance 55-1%2C intracellular Ras-group-related LRR protein 4;Note=Similar to PSR9 (Fragment).;Transcript_evidence=ab initio prediction;ORF_evidence=Q8RX50 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591);Oryzabase=13056;TENOR=Os08t0511700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	25379917	25380592	.	-	0	Parent=Os08t0511700-00
Chr08	irgsp1_rep	CDS	25378714	25379627	.	-	2	Parent=Os08t0511700-00
Chr08	irgsp1_rep	CDS	25378555	25378629	.	-	0	Parent=Os08t0511700-00
Chr08	irgsp1_rep	CDS	25377754	25377813	.	-	0	Parent=Os08t0511700-00
Chr08	irgsp1_rep	mRNA	25385363	25387275	.	-	.	ID=Os08t0511800-01;Name=Os08t0511800-01;Locus_id=Os08g0511800;Note=Conserved hypothetical protein.;Transcript_evidence=AK063264 (DDBJ%2C Best hit);ORF_evidence=A2YWY7 (UniProt);NIAS_FLcDNA=001-113-A11;Expression=AK063264;TENOR=Os08t0511800-01;KEGG=Os08t0511800-01
Chr08	irgsp1_rep	five_prime_UTR	25387169	25387275	.	-	.	Parent=Os08t0511800-01
Chr08	irgsp1_rep	CDS	25386989	25387168	.	-	0	Parent=Os08t0511800-01
Chr08	irgsp1_rep	CDS	25385687	25385860	.	-	0	Parent=Os08t0511800-01
Chr08	irgsp1_rep	three_prime_UTR	25385363	25385686	.	-	.	Parent=Os08t0511800-01
Chr08	irgsp1_rep	mRNA	25388405	25391795	.	-	.	ID=Os08t0511900-01;Name=Os08t0511900-01;Locus_id=Os08g0511900;Note=Similar to aminoacylase-1.;Transcript_evidence=AK240689 (DDBJ%2C Best hit);ORF_evidence=NP_001148589.1 (RefSeq);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: metabolic process (GO:0008152),Cellular Component: cytoplasm (GO:0005737),Molecular Function: aminoacylase activity (GO:0004046),Molecular Function: hydrolase activity (GO:0016787);InterPro=Peptidase M20 (IPR002933),N-acyl-L-amino-acid amidohydrolase (IPR010159),Peptidase M20%2C dimerisation (IPR011650);NIAS_FLcDNA=J043005E06;TENOR=Os08t0511900-01;KEGG=Os08t0511900-01 (EC:3.5.1.14)
Chr08	irgsp1_rep	five_prime_UTR	25391382	25391795	.	-	.	Parent=Os08t0511900-01
Chr08	irgsp1_rep	CDS	25391343	25391381	.	-	0	Parent=Os08t0511900-01
Chr08	irgsp1_rep	CDS	25390639	25391091	.	-	0	Parent=Os08t0511900-01
Chr08	irgsp1_rep	CDS	25389812	25389949	.	-	0	Parent=Os08t0511900-01
Chr08	irgsp1_rep	CDS	25389064	25389303	.	-	0	Parent=Os08t0511900-01
Chr08	irgsp1_rep	CDS	25388704	25388817	.	-	0	Parent=Os08t0511900-01
Chr08	irgsp1_rep	three_prime_UTR	25388405	25388703	.	-	.	Parent=Os08t0511900-01
Chr08	irgsp1_rep	mRNA	25395116	25397632	.	+	.	ID=Os08t0512100-00;Name=Os08t0512100-00;Locus_id=Os08g0512100;Note=Conserved hypothetical protein.;Transcript_evidence=AK359537 (DDBJ);ORF_evidence=Q6Z8P1 (UniProt);TENOR=Os08t0512100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	25395116	25395338	.	+	.	Parent=Os08t0512100-00
Chr08	irgsp1_rep	CDS	25395339	25395793	.	+	0	Parent=Os08t0512100-00
Chr08	irgsp1_rep	CDS	25397320	25397632	.	+	1	Parent=Os08t0512100-00
Chr08	irgsp1_rep	mRNA	25399831	25400422	.	+	.	ID=Os08t0512200-00;Name=Os08t0512200-00;Locus_id=Os08g0512200;CGSNL Gene Symbol=PI55-2;CGSNL Gene Name=PYRICULARIA ORYZAE RESISTANCE 55-2;Oryzabase Gene Symbol Synonym(s)=pi55-2%2C pi55(t);Oryzabase Gene Name Synonym(s)=Pyricularia oryzae resistance 55-2%2C Magnaporthe grisea resistance 55-2%2C Blast resistance 55-2;Note=Similar to heavy metal-associated domain containing protein.;Transcript_evidence=EU952883 (DDBJ);ORF_evidence=NP_001147000.1 (RefSeq);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);Oryzabase=13057;TENOR=Os08t0512200-00;KEGG=Os08t0512200-00
Chr08	irgsp1_rep	five_prime_UTR	25399831	25399834	.	+	.	Parent=Os08t0512200-00
Chr08	irgsp1_rep	CDS	25399835	25399925	.	+	0	Parent=Os08t0512200-00
Chr08	irgsp1_rep	CDS	25400214	25400410	.	+	2	Parent=Os08t0512200-00
Chr08	irgsp1_rep	three_prime_UTR	25400411	25400422	.	+	.	Parent=Os08t0512200-00
Chr08	irgsp1_rep	mRNA	25401259	25404636	.	+	.	ID=Os08t0512300-01;Name=Os08t0512300-01;Locus_id=Os08g0512300;Note=Similar to Rab geranylgeranyl transferase beta subunit (Fragment).;Transcript_evidence=AK102273 (DDBJ%2C Best hit);ORF_evidence=XP_002871518.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Prenyltransferase/squalene oxidase (IPR001330),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930);NIAS_FLcDNA=J033089B20;Expression=AK102273;TENOR=Os08t0512300-01;KEGG=Os08t0512300-01 (EC:2.5.1.60)
Chr08	irgsp1_rep	five_prime_UTR	25401259	25401347	.	+	.	Parent=Os08t0512300-01
Chr08	irgsp1_rep	CDS	25401348	25401410	.	+	0	Parent=Os08t0512300-01
Chr08	irgsp1_rep	CDS	25401485	25401638	.	+	0	Parent=Os08t0512300-01
Chr08	irgsp1_rep	CDS	25401790	25401906	.	+	2	Parent=Os08t0512300-01
Chr08	irgsp1_rep	CDS	25402783	25402849	.	+	2	Parent=Os08t0512300-01
Chr08	irgsp1_rep	CDS	25402943	25403091	.	+	1	Parent=Os08t0512300-01
Chr08	irgsp1_rep	CDS	25403569	25403702	.	+	2	Parent=Os08t0512300-01
Chr08	irgsp1_rep	CDS	25403794	25403892	.	+	0	Parent=Os08t0512300-01
Chr08	irgsp1_rep	CDS	25404022	25404097	.	+	0	Parent=Os08t0512300-01
Chr08	irgsp1_rep	CDS	25404206	25404306	.	+	2	Parent=Os08t0512300-01
Chr08	irgsp1_rep	three_prime_UTR	25404307	25404636	.	+	.	Parent=Os08t0512300-01
Chr08	irgsp1_rep	mRNA	25404904	25409044	.	-	.	ID=Os08t0512400-01;Name=Os08t0512400-01;Locus_id=Os08g0512400;Note=Protein of unknown function DUF296 domain containing protein.;Transcript_evidence=AK067561 (DDBJ%2C Best hit);ORF_evidence=NP_001149717.1 (RefSeq);GO=Molecular Function: DNA binding (GO:0003677);InterPro=Domain of unknown function DUF296 (IPR005175),AT hook%2C DNA-binding motif (IPR017956);NIAS_FLcDNA=J013112F01;Expression=AK067561;TENOR=Os08t0512400-01;KEGG=Os08t0512400-01
Chr08	irgsp1_rep	five_prime_UTR	25408843	25409044	.	-	.	Parent=Os08t0512400-01
Chr08	irgsp1_rep	five_prime_UTR	25408260	25408300	.	-	.	Parent=Os08t0512400-01
Chr08	irgsp1_rep	CDS	25408197	25408259	.	-	0	Parent=Os08t0512400-01
Chr08	irgsp1_rep	CDS	25407707	25407935	.	-	0	Parent=Os08t0512400-01
Chr08	irgsp1_rep	CDS	25407151	25407203	.	-	2	Parent=Os08t0512400-01
Chr08	irgsp1_rep	CDS	25406261	25406392	.	-	0	Parent=Os08t0512400-01
Chr08	irgsp1_rep	CDS	25405871	25406032	.	-	0	Parent=Os08t0512400-01
Chr08	irgsp1_rep	CDS	25405305	25405544	.	-	0	Parent=Os08t0512400-01
Chr08	irgsp1_rep	three_prime_UTR	25404904	25405304	.	-	.	Parent=Os08t0512400-01
Chr08	irgsp1_rep	mRNA	25405005	25408253	.	-	.	ID=Os08t0512400-02;Name=Os08t0512400-02;Locus_id=Os08g0512400;Note=Similar to AT-hook protein 1.;Transcript_evidence=AK063161 (DDBJ%2C Best hit);ORF_evidence=NP_001149717.1 (RefSeq);GO=Molecular Function: DNA binding (GO:0003677);InterPro=Domain of unknown function DUF296 (IPR005175),AT hook%2C DNA-binding motif (IPR017956);NIAS_FLcDNA=001-046-D04;Expression=AK063161;TENOR=Os08t0512400-02;KEGG=Os08t0512400-02
Chr08	irgsp1_rep	five_prime_UTR	25408185	25408253	.	-	.	Parent=Os08t0512400-02
Chr08	irgsp1_rep	CDS	25407707	25408184	.	-	0	Parent=Os08t0512400-02
Chr08	irgsp1_rep	CDS	25407151	25407203	.	-	2	Parent=Os08t0512400-02
Chr08	irgsp1_rep	CDS	25406261	25406392	.	-	0	Parent=Os08t0512400-02
Chr08	irgsp1_rep	CDS	25405871	25406032	.	-	0	Parent=Os08t0512400-02
Chr08	irgsp1_rep	CDS	25405305	25405544	.	-	0	Parent=Os08t0512400-02
Chr08	irgsp1_rep	three_prime_UTR	25405005	25405304	.	-	.	Parent=Os08t0512400-02
Chr08	irgsp1_rep	mRNA	25416182	25418653	.	+	.	ID=Os08t0512500-01;Name=Os08t0512500-01;Locus_id=Os08g0512500;Note=Similar to Thylakoid lumen protein%2C chloroplast.;Transcript_evidence=AK068227 (DDBJ%2C Best hit);ORF_evidence=NP_565131.1 (RefSeq);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: oxygen evolving complex (GO:0009654),Cellular Component: extrinsic to membrane (GO:0019898),Molecular Function: calcium ion binding (GO:0005509);InterPro=Photosystem II PsbP%2C oxygen evolving complex (IPR002683),Mog1/PsbP%2C alpha/beta/alpha sandwich (IPR016123),Mog1/PsbP/DUF1795%2C alpha/beta/alpha sandwich (IPR016124);NIAS_FLcDNA=J013136N03;Expression=AK068227;TENOR=Os08t0512500-01;KEGG=Os08t0512500-01
Chr08	irgsp1_rep	five_prime_UTR	25416182	25416238	.	+	.	Parent=Os08t0512500-01
Chr08	irgsp1_rep	CDS	25416239	25416366	.	+	0	Parent=Os08t0512500-01
Chr08	irgsp1_rep	CDS	25416476	25416573	.	+	1	Parent=Os08t0512500-01
Chr08	irgsp1_rep	CDS	25416684	25416749	.	+	2	Parent=Os08t0512500-01
Chr08	irgsp1_rep	CDS	25417156	25417236	.	+	2	Parent=Os08t0512500-01
Chr08	irgsp1_rep	CDS	25417365	25417447	.	+	2	Parent=Os08t0512500-01
Chr08	irgsp1_rep	CDS	25417607	25417682	.	+	0	Parent=Os08t0512500-01
Chr08	irgsp1_rep	CDS	25417818	25417936	.	+	2	Parent=Os08t0512500-01
Chr08	irgsp1_rep	CDS	25418219	25418269	.	+	0	Parent=Os08t0512500-01
Chr08	irgsp1_rep	CDS	25418376	25418402	.	+	0	Parent=Os08t0512500-01
Chr08	irgsp1_rep	three_prime_UTR	25418403	25418653	.	+	.	Parent=Os08t0512500-01
Chr08	irgsp1_rep	mRNA	25419884	25421722	.	+	.	ID=Os08t0512600-01;Name=Os08t0512600-01;Locus_id=Os08g0512600;RAP-DB Gene Symbol Synonym(s)=CDKB2%3B1%2C Orysa%3BCDKB2%3B1%2C OsCDKB2%3B1%2C cdc2Os3%2C Orysa%3BCDKB%3B2;RAP-DB Gene Name Synonym(s)=CYCLIN-DEPENDENT KINASE B2%3B1%2C B-type cyclin-dependent kinase 2%3B1;CGSNL Gene Symbol=CDKB2%3B1;CGSNL Gene Name=CYCLIN-DEPENDENT KINASE B2%3B1;Oryzabase Gene Symbol Synonym(s)=Orysa%3BCDKB2%3B1%2C OsCDKB2%3B1%2C cdc2Os3%2C Oscdc20s-3%2C cdc20s-3%2C Orysa%3BCDKB%3B2%2C CYCB2.1;Oryzabase Gene Name Synonym(s)=B-type cyclin-dependent kinase 2%3B1;Note=B-type plant-specific cyclin-dependent kinase%2C DNA damage response;Transcript_evidence=AK059682;ORF_evidence=Q0J4I1;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine/threonine/dual specificity protein kinase%2C catalytic  domain (IPR002290),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=001-031-H09;Manual Curation=March 16%2C 2015;Literature_PMID=22092531,12753582,10987556;Oryzabase=8984;Expression=AK059682;TENOR=Os08t0512600-01;KEGG=Os08t0512600-01
Chr08	irgsp1_rep	five_prime_UTR	25419884	25419933	.	+	.	Parent=Os08t0512600-01
Chr08	irgsp1_rep	CDS	25419934	25420344	.	+	0	Parent=Os08t0512600-01
Chr08	irgsp1_rep	CDS	25420494	25420667	.	+	0	Parent=Os08t0512600-01
Chr08	irgsp1_rep	CDS	25420780	25420873	.	+	0	Parent=Os08t0512600-01
Chr08	irgsp1_rep	CDS	25420963	25421032	.	+	2	Parent=Os08t0512600-01
Chr08	irgsp1_rep	CDS	25421139	25421277	.	+	1	Parent=Os08t0512600-01
Chr08	irgsp1_rep	CDS	25421440	25421532	.	+	0	Parent=Os08t0512600-01
Chr08	irgsp1_rep	three_prime_UTR	25421533	25421722	.	+	.	Parent=Os08t0512600-01
Chr08	irgsp1_rep	mRNA	25427055	25431499	.	+	.	ID=Os08t0512700-01;Name=Os08t0512700-01;Locus_id=Os08g0512700;Oryzabase Gene Symbol Synonym(s)=HMGR III%2C Hmg3%2C HMGR3%2C HMGR 3%2C OsHMGR3%2C HMGR2%2C OsHMGR2%2C OsOMT;Oryzabase Gene Name Synonym(s)=3-hydroxy-3-methylglutaryl coenzyme A reductase III%2C 3-hydroxy-3-methylglutaryl-CoA reductase 3;Note=Similar to 3-hydroxy-3-methylglutaryl coenzyme A reductase (EC 1.1.1.34) (Fragment).;Transcript_evidence=AK060545 (DDBJ%2C Best hit);ORF_evidence=Q9XHL5 (UniProt);GO=Biological Process: isoprenoid biosynthetic process (GO:0008299),Biological Process: coenzyme A metabolic process (GO:0015936),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: integral to membrane (GO:0016021),Molecular Function: hydroxymethylglutaryl-CoA reductase (NADPH) activity (GO:0004420),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: NADP binding (GO:0050661),Molecular Function: coenzyme binding (GO:0050662);InterPro=Hydroxymethylglutaryl-CoA reductase%2C class I/II (IPR002202),Hydroxymethylglutaryl-CoA reductase%2C eukaryotic/arcaheal type (IPR004554),Hydroxymethylglutaryl-CoA reductase%2C class I/II%2C NAD/NADP-binding (IPR009023),Hydroxymethylglutaryl-CoA reductase%2C class I/II%2C substrate-binding (IPR009029),Hydroxymethylglutaryl-CoA reductase%2C class I/II%2C catalytic domain (IPR023074),Hydroxymethylglutaryl-CoA reductase%2C class I/II%2C conserved site (IPR023076),Hydroxymethylglutaryl-CoA reductase%2C N-terminal (IPR023282);NIAS_FLcDNA=001-021-F05;Oryzabase=15790;Expression=AK060545;TENOR=Os08t0512700-01;KEGG=Os08t0512700-01 (EC:1.1.1.34)
Chr08	irgsp1_rep	five_prime_UTR	25427055	25427056	.	+	.	Parent=Os08t0512700-01
Chr08	irgsp1_rep	CDS	25427057	25427688	.	+	0	Parent=Os08t0512700-01
Chr08	irgsp1_rep	CDS	25428340	25428521	.	+	1	Parent=Os08t0512700-01
Chr08	irgsp1_rep	CDS	25429439	25429785	.	+	2	Parent=Os08t0512700-01
Chr08	irgsp1_rep	CDS	25430569	25430811	.	+	0	Parent=Os08t0512700-01
Chr08	irgsp1_rep	three_prime_UTR	25430812	25431499	.	+	.	Parent=Os08t0512700-01
Chr08	irgsp1_rep	mRNA	25429446	25430800	.	-	.	ID=Os08t0512801-00;Name=Os08t0512801-00;Locus_id=Os08g0512801;Note=Hypothetical gene.;Transcript_evidence=BT019297 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0512801-00
Chr08	irgsp1_rep	five_prime_UTR	25430572	25430800	.	-	.	Parent=Os08t0512801-00
Chr08	irgsp1_rep	five_prime_UTR	25429671	25429788	.	-	.	Parent=Os08t0512801-00
Chr08	irgsp1_rep	CDS	25429446	25429670	.	-	0	Parent=Os08t0512801-00
Chr08	irgsp1_rep	mRNA	25434400	25436334	.	+	.	ID=Os08t0512900-01;Name=Os08t0512900-01;Locus_id=Os08g0512900;Note=Conserved hypothetical protein.;Transcript_evidence=AK242669 (DDBJ%2C Best hit);ORF_evidence=NP_001062222.2 (RefSeq);NIAS_FLcDNA=J090030E24;TENOR=Os08t0512900-01;KEGG=Os08t0512900-01
Chr08	irgsp1_rep	five_prime_UTR	25434400	25434483	.	+	.	Parent=Os08t0512900-01
Chr08	irgsp1_rep	CDS	25434484	25434657	.	+	0	Parent=Os08t0512900-01
Chr08	irgsp1_rep	CDS	25435660	25435734	.	+	0	Parent=Os08t0512900-01
Chr08	irgsp1_rep	CDS	25435837	25435890	.	+	0	Parent=Os08t0512900-01
Chr08	irgsp1_rep	three_prime_UTR	25435891	25436334	.	+	.	Parent=Os08t0512900-01
Chr08	irgsp1_rep	mRNA	25437119	25440675	.	+	.	ID=Os08t0513000-01;Name=Os08t0513000-01;Locus_id=Os08g0513000;Oryzabase Gene Symbol Synonym(s)=OsPP103;Oryzabase Gene Name Synonym(s)=Protein phosphatase 103;Note=Similar to Serine/threonine protein phosphatase.;Transcript_evidence=AK241809 (DDBJ%2C Best hit);ORF_evidence=A2YWZ7 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Metallophosphoesterase domain (IPR004843),Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (IPR006186);NIAS_FLcDNA=J065210E22;Oryzabase=18651;TENOR=Os08t0513000-01;KEGG=Os08t0513000-01 (EC:3.1.3.16)
Chr08	irgsp1_rep	five_prime_UTR	25437119	25437196	.	+	.	Parent=Os08t0513000-01
Chr08	irgsp1_rep	CDS	25437197	25437634	.	+	0	Parent=Os08t0513000-01
Chr08	irgsp1_rep	CDS	25438127	25438210	.	+	0	Parent=Os08t0513000-01
Chr08	irgsp1_rep	CDS	25438287	25438295	.	+	0	Parent=Os08t0513000-01
Chr08	irgsp1_rep	three_prime_UTR	25438296	25438630	.	+	.	Parent=Os08t0513000-01
Chr08	irgsp1_rep	three_prime_UTR	25439899	25440045	.	+	.	Parent=Os08t0513000-01
Chr08	irgsp1_rep	three_prime_UTR	25440241	25440348	.	+	.	Parent=Os08t0513000-01
Chr08	irgsp1_rep	three_prime_UTR	25440484	25440675	.	+	.	Parent=Os08t0513000-01
Chr08	irgsp1_rep	mRNA	25437150	25440696	.	-	.	ID=Os08t0513051-00;Name=Os08t0513051-00;Locus_id=Os08g0513051;Note=Hypothetical protein.;Transcript_evidence=tplb0062g11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0513051-00
Chr08	irgsp1_rep	five_prime_UTR	25440496	25440696	.	-	.	Parent=Os08t0513051-00
Chr08	irgsp1_rep	five_prime_UTR	25440236	25440355	.	-	.	Parent=Os08t0513051-00
Chr08	irgsp1_rep	five_prime_UTR	25439895	25440040	.	-	.	Parent=Os08t0513051-00
Chr08	irgsp1_rep	five_prime_UTR	25438169	25438626	.	-	.	Parent=Os08t0513051-00
Chr08	irgsp1_rep	CDS	25438109	25438168	.	-	0	Parent=Os08t0513051-00
Chr08	irgsp1_rep	CDS	25437150	25437619	.	-	0	Parent=Os08t0513051-00
Chr08	irgsp1_rep	mRNA	25441269	25441786	.	+	.	ID=Os08t0513100-01;Name=Os08t0513100-01;Locus_id=Os08g0513100;Note=Similar to CP12-3.;Transcript_evidence=AK107793 (DDBJ%2C Best hit);ORF_evidence=NP_565134.1 (RefSeq);InterPro=Domain of unknown function CP12 (IPR003823);NIAS_FLcDNA=002-133-D07;TENOR=Os08t0513100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	25441269	25441453	.	+	.	Parent=Os08t0513100-01
Chr08	irgsp1_rep	CDS	25441454	25441648	.	+	0	Parent=Os08t0513100-01
Chr08	irgsp1_rep	three_prime_UTR	25441649	25441786	.	+	.	Parent=Os08t0513100-01
Chr08	irgsp1_rep	mRNA	25444516	25450065	.	+	.	ID=Os08t0513300-01;Name=Os08t0513300-01;Locus_id=Os08g0513300;Note=Helix-hairpin-helix motif%2C class 2 domain containing protein.;Transcript_evidence=AK068851 (DDBJ%2C Best hit);ORF_evidence=A2YX00 (UniProt);InterPro=Ribosomal protein S24/S35%2C mitochondrial%2C conserved domain (IPR019349);NIAS_FLcDNA=J013162F01;Expression=AK068851;TENOR=Os08t0513300-01;KEGG=Os08t0513300-01
Chr08	irgsp1_rep	five_prime_UTR	25444516	25444581	.	+	.	Parent=Os08t0513300-01
Chr08	irgsp1_rep	CDS	25444582	25444744	.	+	0	Parent=Os08t0513300-01
Chr08	irgsp1_rep	CDS	25445225	25445623	.	+	2	Parent=Os08t0513300-01
Chr08	irgsp1_rep	CDS	25448440	25448857	.	+	2	Parent=Os08t0513300-01
Chr08	irgsp1_rep	CDS	25449595	25449784	.	+	1	Parent=Os08t0513300-01
Chr08	irgsp1_rep	three_prime_UTR	25449785	25450065	.	+	.	Parent=Os08t0513300-01
Chr08	irgsp1_rep	mRNA	25444538	25450058	.	+	.	ID=Os08t0513300-02;Name=Os08t0513300-02;Locus_id=Os08g0513300;Note=Helix-hairpin-helix motif%2C class 2 domain containing protein.;Transcript_evidence=AK104896 (DDBJ%2C Best hit);ORF_evidence=A2YX00 (UniProt);InterPro=Ribosomal protein S24/S35%2C mitochondrial%2C conserved domain (IPR019349);NIAS_FLcDNA=001-046-A11;Expression=AK104896;TENOR=Os08t0513300-02;KEGG=Os08t0513300-02
Chr08	irgsp1_rep	five_prime_UTR	25444538	25444581	.	+	.	Parent=Os08t0513300-02
Chr08	irgsp1_rep	CDS	25444582	25444744	.	+	0	Parent=Os08t0513300-02
Chr08	irgsp1_rep	CDS	25445225	25445623	.	+	2	Parent=Os08t0513300-02
Chr08	irgsp1_rep	CDS	25448440	25448857	.	+	2	Parent=Os08t0513300-02
Chr08	irgsp1_rep	CDS	25449595	25449784	.	+	1	Parent=Os08t0513300-02
Chr08	irgsp1_rep	three_prime_UTR	25449785	25450058	.	+	.	Parent=Os08t0513300-02
Chr08	irgsp1_rep	mRNA	25467761	25468115	.	+	.	ID=Os08t0513600-01;Name=Os08t0513600-01;Locus_id=Os08g0513600;Note=Hypothetical conserved gene.;Transcript_evidence=AK242021 (DDBJ%2C Best hit);ORF_evidence=NP_001062226.1 (RefSeq);NIAS_FLcDNA=J075112A17;TENOR=Os08t0513600-01;KEGG=Os08t0513600-01
Chr08	irgsp1_rep	five_prime_UTR	25467761	25467761	.	+	.	Parent=Os08t0513600-01
Chr08	irgsp1_rep	CDS	25467762	25467833	.	+	0	Parent=Os08t0513600-01
Chr08	irgsp1_rep	three_prime_UTR	25467834	25468115	.	+	.	Parent=Os08t0513600-01
Chr08	irgsp1_rep	mRNA	25484503	25487437	.	+	.	ID=Os08t0513700-01;Name=Os08t0513700-01;Locus_id=Os08g0513700;CGSNL Gene Symbol=SPL15;CGSNL Gene Name=RICE SQUAMOSA PROMOTER-BINDING-LIKE 15;Oryzabase Gene Symbol Synonym(s)=OsSPL15%2C DLN215%2C OsDLN215;Oryzabase Gene Name Synonym(s)=Squamosa promoter-binding-like protein 15%2C DLN repressor 215%2C DLN motif protein 215;Note=Similar to Squamosa promoter-binding-like protein 15.;Transcript_evidence=AK242070 (DDBJ%2C Best hit);ORF_evidence=Q6Z8M8 (UniProt);NIAS_FLcDNA=J075133L10;Oryzabase=6899;TENOR=Os08t0513700-01;KEGG=Os08t0513700-01
Chr08	irgsp1_rep	CDS	25484503	25484544	.	+	0	Parent=Os08t0513700-01
Chr08	irgsp1_rep	CDS	25484658	25484732	.	+	0	Parent=Os08t0513700-01
Chr08	irgsp1_rep	CDS	25484824	25484931	.	+	0	Parent=Os08t0513700-01
Chr08	irgsp1_rep	CDS	25485022	25485139	.	+	0	Parent=Os08t0513700-01
Chr08	irgsp1_rep	CDS	25485249	25485384	.	+	2	Parent=Os08t0513700-01
Chr08	irgsp1_rep	CDS	25485470	25485614	.	+	1	Parent=Os08t0513700-01
Chr08	irgsp1_rep	CDS	25485702	25486322	.	+	0	Parent=Os08t0513700-01
Chr08	irgsp1_rep	CDS	25486408	25486839	.	+	0	Parent=Os08t0513700-01
Chr08	irgsp1_rep	three_prime_UTR	25486840	25487437	.	+	.	Parent=Os08t0513700-01
Chr08	irgsp1_rep	mRNA	25493856	25494860	.	+	.	ID=Os08t0514000-00;Name=Os08t0514000-00;Locus_id=Os08g0514000;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3BUT5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine-threonine/tyrosine-protein kinase (IPR001245),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Legume lectin%2C beta chain%2C Mn/Ca-binding site (IPR019825);TENOR=Os08t0514000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	25493856	25494860	.	+	0	Parent=Os08t0514000-00
Chr08	irgsp1_rep	mRNA	25494552	25496092	.	-	.	ID=Os08t0514033-00;Name=Os08t0514033-00;Locus_id=Os08g0514033;Note=Hypothetical protein.;Transcript_evidence=EU969960 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0514033-00
Chr08	irgsp1_rep	CDS	25495448	25496092	.	-	0	Parent=Os08t0514033-00
Chr08	irgsp1_rep	three_prime_UTR	25495426	25495447	.	-	.	Parent=Os08t0514033-00
Chr08	irgsp1_rep	three_prime_UTR	25494552	25494785	.	-	.	Parent=Os08t0514033-00
Chr08	irgsp1_rep	mRNA	25495910	25496359	.	+	.	ID=Os08t0514066-00;Name=Os08t0514066-00;Locus_id=Os08g0514066;Note=Similar to H0201G08.2 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q25AD0 (UniProt);TENOR=Os08t0514066-00
Chr08	irgsp1_rep	CDS	25495910	25496359	.	+	0	Parent=Os08t0514066-00
Chr08	irgsp1_rep	mRNA	25498232	25502014	.	+	.	ID=Os08t0514100-01;Name=Os08t0514100-01;Locus_id=Os08g0514100;Note=Legume lectin%2C beta chain domain containing protein.;Transcript_evidence=AK109868 (DDBJ%2C Best hit);ORF_evidence=A2YX06 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Legume lectin%2C beta chain (IPR001220),Concanavalin A-like lectin/glucanase (IPR008985),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Legume lectin%2C beta chain%2C Mn/Ca-binding site (IPR019825);NIAS_FLcDNA=002-149-A07;TENOR=Os08t0514100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	25498232	25498275	.	+	.	Parent=Os08t0514100-01
Chr08	irgsp1_rep	CDS	25498276	25499168	.	+	0	Parent=Os08t0514100-01
Chr08	irgsp1_rep	CDS	25499243	25499620	.	+	1	Parent=Os08t0514100-01
Chr08	irgsp1_rep	CDS	25500961	25501132	.	+	1	Parent=Os08t0514100-01
Chr08	irgsp1_rep	three_prime_UTR	25501133	25502014	.	+	.	Parent=Os08t0514100-01
Chr08	irgsp1_rep	mRNA	25512663	25518531	.	+	.	ID=Os08t0514300-00;Name=Os08t0514300-00;Locus_id=Os08g0514300;Note=Similar to H0425E08.13 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q25AC2 (UniProt);TENOR=Os08t0514300-00
Chr08	irgsp1_rep	CDS	25512663	25512797	.	+	0	Parent=Os08t0514300-00
Chr08	irgsp1_rep	CDS	25513096	25513206	.	+	0	Parent=Os08t0514300-00
Chr08	irgsp1_rep	CDS	25513282	25513425	.	+	0	Parent=Os08t0514300-00
Chr08	irgsp1_rep	CDS	25514481	25514706	.	+	0	Parent=Os08t0514300-00
Chr08	irgsp1_rep	CDS	25514802	25514893	.	+	2	Parent=Os08t0514300-00
Chr08	irgsp1_rep	CDS	25514986	25515084	.	+	0	Parent=Os08t0514300-00
Chr08	irgsp1_rep	CDS	25515178	25515226	.	+	0	Parent=Os08t0514300-00
Chr08	irgsp1_rep	CDS	25515313	25515366	.	+	2	Parent=Os08t0514300-00
Chr08	irgsp1_rep	CDS	25515554	25515726	.	+	2	Parent=Os08t0514300-00
Chr08	irgsp1_rep	CDS	25515803	25515874	.	+	0	Parent=Os08t0514300-00
Chr08	irgsp1_rep	CDS	25515955	25516050	.	+	0	Parent=Os08t0514300-00
Chr08	irgsp1_rep	CDS	25517215	25517313	.	+	0	Parent=Os08t0514300-00
Chr08	irgsp1_rep	CDS	25518514	25518531	.	+	0	Parent=Os08t0514300-00
Chr08	irgsp1_rep	mRNA	25534766	25535846	.	-	.	ID=Os08t0514600-00;Name=Os08t0514600-00;Locus_id=Os08g0514600;Note=Hypothetical conserved gene.;Transcript_evidence=tplb0011l17 (Wheat FLcDNA);ORF_evidence=B9G1S2 (UniProt);GO=Molecular Function: sulfotransferase activity (GO:0008146);InterPro=Sulfotransferase domain (IPR000863);TENOR=Os08t0514600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	25535133	25535846	.	-	0	Parent=Os08t0514600-00
Chr08	irgsp1_rep	three_prime_UTR	25535084	25535132	.	-	.	Parent=Os08t0514600-00
Chr08	irgsp1_rep	three_prime_UTR	25534766	25534960	.	-	.	Parent=Os08t0514600-00
Chr08	irgsp1_rep	mRNA	25564443	25567818	.	-	.	ID=Os08t0515000-00;Name=Os08t0515000-00;Locus_id=Os08g0515000;Note=Sulfotransferase domain domain containing protein.;Transcript_evidence=AK335527 (DDBJ);ORF_evidence=Q84Z70 (UniProt);GO=Molecular Function: sulfotransferase activity (GO:0008146);InterPro=Sulfotransferase domain (IPR000863);TENOR=Os08t0515000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	25567273	25567818	.	-	0	Parent=Os08t0515000-00
Chr08	irgsp1_rep	CDS	25564443	25564946	.	-	0	Parent=Os08t0515000-00
Chr08	irgsp1_rep	mRNA	25584838	25587485	.	-	.	ID=Os08t0515600-01;Name=Os08t0515600-01;Locus_id=Os08g0515600;Note=Non-protein coding transcript.;Transcript_evidence=AK059091 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-022-B12;TENOR=Os08t0515600-01
Chr08	irgsp1_rep	exon	25587139	25587485	.	-	.	Parent=Os08t0515600-01
Chr08	irgsp1_rep	exon	25586723	25586913	.	-	.	Parent=Os08t0515600-01
Chr08	irgsp1_rep	exon	25584838	25585524	.	-	.	Parent=Os08t0515600-01
Chr08	irgsp1_rep	mRNA	25584990	25589000	.	+	.	ID=Os08t0515700-01;Name=Os08t0515700-01;Locus_id=Os08g0515700;CGSNL Gene Symbol=TCF;CGSNL Gene Name=TERNARY COMPLEX FACTOR;Oryzabase Gene Symbol Synonym(s)=OsTCF;Oryzabase Gene Name Synonym(s)=ternary complex factor;Note=Protein of unknown function DUF547 domain containing protein.;Transcript_evidence=AK067628 (DDBJ%2C Best hit);ORF_evidence=A3BUU1 (UniProt);InterPro=Domain of unknown function DUF547 (IPR006869);NIAS_FLcDNA=J013113J20;Oryzabase=22461;Expression=AK067628;TENOR=Os08t0515700-01;KEGG=Os08t0515700-01
Chr08	irgsp1_rep	five_prime_UTR	25584990	25585305	.	+	.	Parent=Os08t0515700-01
Chr08	irgsp1_rep	five_prime_UTR	25585412	25585440	.	+	.	Parent=Os08t0515700-01
Chr08	irgsp1_rep	CDS	25585441	25585547	.	+	0	Parent=Os08t0515700-01
Chr08	irgsp1_rep	CDS	25586114	25586174	.	+	1	Parent=Os08t0515700-01
Chr08	irgsp1_rep	CDS	25586326	25586439	.	+	0	Parent=Os08t0515700-01
Chr08	irgsp1_rep	CDS	25586739	25586870	.	+	0	Parent=Os08t0515700-01
Chr08	irgsp1_rep	CDS	25586968	25587096	.	+	0	Parent=Os08t0515700-01
Chr08	irgsp1_rep	CDS	25587266	25587663	.	+	0	Parent=Os08t0515700-01
Chr08	irgsp1_rep	CDS	25587745	25587844	.	+	1	Parent=Os08t0515700-01
Chr08	irgsp1_rep	CDS	25587976	25588035	.	+	0	Parent=Os08t0515700-01
Chr08	irgsp1_rep	CDS	25588123	25588209	.	+	0	Parent=Os08t0515700-01
Chr08	irgsp1_rep	CDS	25588300	25588428	.	+	0	Parent=Os08t0515700-01
Chr08	irgsp1_rep	CDS	25588502	25588801	.	+	0	Parent=Os08t0515700-01
Chr08	irgsp1_rep	three_prime_UTR	25588802	25589000	.	+	.	Parent=Os08t0515700-01
Chr08	irgsp1_rep	mRNA	25589036	25590554	.	-	.	ID=Os08t0515800-01;Name=Os08t0515800-01;Locus_id=Os08g0515800;Note=Mitochodrial transcription termination factor-related family protein.;Transcript_evidence=AK061787 (DDBJ%2C Best hit);ORF_evidence=NP_001152615.1 (RefSeq);InterPro=Mitochodrial transcription termination factor-related (IPR003690);NIAS_FLcDNA=001-039-E10;Expression=AK061787;TENOR=Os08t0515800-01;KEGG=Os08t0515800-01
Chr08	irgsp1_rep	five_prime_UTR	25590458	25590554	.	-	.	Parent=Os08t0515800-01
Chr08	irgsp1_rep	five_prime_UTR	25590218	25590230	.	-	.	Parent=Os08t0515800-01
Chr08	irgsp1_rep	CDS	25589216	25590217	.	-	0	Parent=Os08t0515800-01
Chr08	irgsp1_rep	three_prime_UTR	25589036	25589215	.	-	.	Parent=Os08t0515800-01
Chr08	irgsp1_rep	mRNA	25591265	25593041	.	-	.	ID=Os08t0515900-01;Name=Os08t0515900-01;Locus_id=Os08g0515900;Note=Similar to Dihydroflavonol-4-reductase.;Transcript_evidence=AK242505 (DDBJ%2C Best hit);ORF_evidence=B6TC31 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J080309P03;TENOR=Os08t0515900-01;KEGG=Os08t0515900-01
Chr08	irgsp1_rep	five_prime_UTR	25593017	25593041	.	-	.	Parent=Os08t0515900-01
Chr08	irgsp1_rep	CDS	25592896	25593016	.	-	0	Parent=Os08t0515900-01
Chr08	irgsp1_rep	CDS	25592618	25592790	.	-	2	Parent=Os08t0515900-01
Chr08	irgsp1_rep	CDS	25592289	25592480	.	-	0	Parent=Os08t0515900-01
Chr08	irgsp1_rep	CDS	25592043	25592205	.	-	0	Parent=Os08t0515900-01
Chr08	irgsp1_rep	CDS	25591629	25591867	.	-	2	Parent=Os08t0515900-01
Chr08	irgsp1_rep	three_prime_UTR	25591265	25591628	.	-	.	Parent=Os08t0515900-01
Chr08	irgsp1_rep	mRNA	25593302	25596944	.	-	.	ID=Os08t0516000-01;Name=Os08t0516000-01;Locus_id=Os08g0516000;Note=Conserved hypothetical protein.;Transcript_evidence=AK072130 (DDBJ%2C Best hit);ORF_evidence=A3BUU4 (UniProt);NIAS_FLcDNA=J013127L10;TENOR=Os08t0516000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	25596829	25596944	.	-	.	Parent=Os08t0516000-01
Chr08	irgsp1_rep	CDS	25596559	25596828	.	-	0	Parent=Os08t0516000-01
Chr08	irgsp1_rep	three_prime_UTR	25595631	25596558	.	-	.	Parent=Os08t0516000-01
Chr08	irgsp1_rep	three_prime_UTR	25594383	25595069	.	-	.	Parent=Os08t0516000-01
Chr08	irgsp1_rep	three_prime_UTR	25593302	25594265	.	-	.	Parent=Os08t0516000-01
Chr08	irgsp1_rep	mRNA	25599752	25600603	.	-	.	ID=Os08t0516200-00;Name=Os08t0516200-00;Locus_id=Os08g0516200;Note=BTB/POZ-like domain containing protein.;Transcript_evidence=AK249073 (DDBJ);ORF_evidence=Q84Z58 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069);TENOR=Os08t0516200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	25599779	25600603	.	-	0	Parent=Os08t0516200-00
Chr08	irgsp1_rep	three_prime_UTR	25599752	25599778	.	-	.	Parent=Os08t0516200-00
Chr08	irgsp1_rep	mRNA	25610803	25611963	.	+	.	ID=Os08t0516500-00;Name=Os08t0516500-00;Locus_id=Os08g0516500;Note=Hypothetical conserved gene.;Transcript_evidence=AK249073 (DDBJ);ORF_evidence=B8BCE3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069);TENOR=Os08t0516500-00
Chr08	irgsp1_rep	five_prime_UTR	25610803	25610806	.	+	.	Parent=Os08t0516500-00
Chr08	irgsp1_rep	CDS	25610807	25611170	.	+	0	Parent=Os08t0516500-00
Chr08	irgsp1_rep	CDS	25611701	25611963	.	+	2	Parent=Os08t0516500-00
Chr08	irgsp1_rep	mRNA	25615284	25616030	.	+	.	ID=Os08t0516550-00;Name=Os08t0516550-00;Locus_id=Os08g0516550;Note=Similar to MAB1.;Transcript_evidence=AK366135 (DDBJ);ORF_evidence=A3BUU6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069);TENOR=Os08t0516550-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	25615284	25616012	.	+	0	Parent=Os08t0516550-00
Chr08	irgsp1_rep	three_prime_UTR	25616013	25616030	.	+	.	Parent=Os08t0516550-00
Chr08	irgsp1_rep	mRNA	25628754	25629637	.	-	.	ID=Os08t0516600-01;Name=Os08t0516600-01;Locus_id=Os08g0516600;Note=Conserved hypothetical protein.;Transcript_evidence=AK108596 (DDBJ%2C Best hit);ORF_evidence=A2YX21 (UniProt);NIAS_FLcDNA=002-146-E01;Expression=AK108596;TENOR=Os08t0516600-01;KEGG=Os08t0516600-01
Chr08	irgsp1_rep	five_prime_UTR	25629546	25629637	.	-	.	Parent=Os08t0516600-01
Chr08	irgsp1_rep	CDS	25629165	25629545	.	-	0	Parent=Os08t0516600-01
Chr08	irgsp1_rep	three_prime_UTR	25628754	25629164	.	-	.	Parent=Os08t0516600-01
Chr08	irgsp1_rep	mRNA	25643614	25645276	.	+	.	ID=Os08t0516900-01;Name=Os08t0516900-01;Locus_id=Os08g0516900;RAP-DB Gene Symbol Synonym(s)=SKIN2;RAP-DB Gene Name Synonym(s)=SnRK1A-interacting negative regulator 2;CGSNL Gene Symbol=SKIN2;CGSNL Gene Name=SNRK1A-INTERACTING NEGATIVE REGULATOR 2;Oryzabase Gene Symbol Synonym(s)=OsSKIN2%2C OsO3L9%2C O3L9;Oryzabase Gene Name Synonym(s)=SnRK1A-interacting negative regulator 2%2C OXIDATIVE STRESS 3-like 9%2C OXS3-like 9;Note=SnRK1A protein kinase-interacting negative regulator%2C Repression of sugar/nutrient starvation signaling;Transcript_evidence=AK072516;ORF_evidence=Q84JT9;NIAS_FLcDNA=J023131A13;Manual Curation=June 9%2C 2014;Literature_PMID=24569770;Oryzabase=19057;Expression=AK072516;TENOR=Os08t0516900-01;KEGG=Os08t0516900-01
Chr08	irgsp1_rep	five_prime_UTR	25643614	25643845	.	+	.	Parent=Os08t0516900-01
Chr08	irgsp1_rep	CDS	25643846	25644198	.	+	0	Parent=Os08t0516900-01
Chr08	irgsp1_rep	CDS	25644704	25645136	.	+	1	Parent=Os08t0516900-01
Chr08	irgsp1_rep	three_prime_UTR	25645137	25645276	.	+	.	Parent=Os08t0516900-01
Chr08	irgsp1_rep	mRNA	25644675	25644980	.	-	.	ID=Os08t0517001-00;Name=Os08t0517001-00;Locus_id=Os08g0517001;Note=Hypothetical protein.;Transcript_evidence=BT019309 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0517001-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	25644675	25644980	.	-	0	Parent=Os08t0517001-00
Chr08	irgsp1_rep	mRNA	25648884	25651641	.	+	.	ID=Os08t0517100-01;Name=Os08t0517100-01;Locus_id=Os08g0517100;Note=Similar to ASYMMETRIC LEAVES2 protein (LOB domain protein 36).;Transcript_evidence=AK112071 (DDBJ%2C Best hit);ORF_evidence=NP_565695.1 (RefSeq);InterPro=Lateral organ boundaries%2C LOB (IPR004883);NIAS_FLcDNA=001-120-E04;Expression=AK112071;TENOR=Os08t0517100-01;KEGG=Os08t0517100-01
Chr08	irgsp1_rep	five_prime_UTR	25648884	25649029	.	+	.	Parent=Os08t0517100-01
Chr08	irgsp1_rep	five_prime_UTR	25651162	25651179	.	+	.	Parent=Os08t0517100-01
Chr08	irgsp1_rep	CDS	25651180	25651467	.	+	0	Parent=Os08t0517100-01
Chr08	irgsp1_rep	three_prime_UTR	25651468	25651641	.	+	.	Parent=Os08t0517100-01
Chr08	irgsp1_rep	mRNA	25650157	25650530	.	-	.	ID=Os08t0517150-01;Name=Os08t0517150-01;Locus_id=Os08g0517150;Note=Non-protein coding transcript.;Transcript_evidence=AK318594 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J100058M15;TENOR=Os08t0517150-01
Chr08	irgsp1_rep	exon	25650157	25650530	.	-	.	Parent=Os08t0517150-01
Chr08	irgsp1_rep	mRNA	25652740	25663694	.	-	.	ID=Os08t0517200-01;Name=Os08t0517200-01;Locus_id=Os08g0517200;Oryzabase Gene Symbol Synonym(s)=FCO2;Oryzabase Gene Name Synonym(s)=Functioning in Cesium Over-transport 2;Note=Similar to autoinhibited calcium ATPase.;Transcript_evidence=AK121509 (DDBJ%2C Best hit);ORF_evidence=XP_002325251.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: calmodulin binding (GO:0005516),Molecular Function: metal ion binding (GO:0046872);InterPro=ATPase%2C P-type cation-transporter%2C N-terminal (IPR004014),ATPase%2C P-type%2C ATPase-associated domain (IPR008250),ATPase%2C P-type%2C  transmembrane domain (IPR023298),ATPase%2C  P-type%2C cytoplasmic transduction domain A (IPR023300),Calcium-transporting ATPase%2C N-terminal autoinhibitory domain (IPR024750);NIAS_FLcDNA=J033023K22;Oryzabase=21691;TENOR=Os08t0517200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	25663540	25663694	.	-	.	Parent=Os08t0517200-01
Chr08	irgsp1_rep	five_prime_UTR	25663289	25663374	.	-	.	Parent=Os08t0517200-01
Chr08	irgsp1_rep	CDS	25663139	25663288	.	-	0	Parent=Os08t0517200-01
Chr08	irgsp1_rep	CDS	25662311	25662427	.	-	0	Parent=Os08t0517200-01
Chr08	irgsp1_rep	CDS	25662188	25662230	.	-	0	Parent=Os08t0517200-01
Chr08	irgsp1_rep	CDS	25661944	25662059	.	-	2	Parent=Os08t0517200-01
Chr08	irgsp1_rep	CDS	25661742	25661873	.	-	0	Parent=Os08t0517200-01
Chr08	irgsp1_rep	CDS	25661556	25661645	.	-	0	Parent=Os08t0517200-01
Chr08	irgsp1_rep	CDS	25661337	25661406	.	-	0	Parent=Os08t0517200-01
Chr08	irgsp1_rep	CDS	25661134	25661204	.	-	2	Parent=Os08t0517200-01
Chr08	irgsp1_rep	CDS	25660951	25661042	.	-	0	Parent=Os08t0517200-01
Chr08	irgsp1_rep	CDS	25660855	25660876	.	-	1	Parent=Os08t0517200-01
Chr08	irgsp1_rep	three_prime_UTR	25660799	25660854	.	-	.	Parent=Os08t0517200-01
Chr08	irgsp1_rep	three_prime_UTR	25660625	25660696	.	-	.	Parent=Os08t0517200-01
Chr08	irgsp1_rep	three_prime_UTR	25660369	25660452	.	-	.	Parent=Os08t0517200-01
Chr08	irgsp1_rep	three_prime_UTR	25660186	25660279	.	-	.	Parent=Os08t0517200-01
Chr08	irgsp1_rep	three_prime_UTR	25660014	25660122	.	-	.	Parent=Os08t0517200-01
Chr08	irgsp1_rep	three_prime_UTR	25659863	25659918	.	-	.	Parent=Os08t0517200-01
Chr08	irgsp1_rep	three_prime_UTR	25659710	25659752	.	-	.	Parent=Os08t0517200-01
Chr08	irgsp1_rep	three_prime_UTR	25659545	25659628	.	-	.	Parent=Os08t0517200-01
Chr08	irgsp1_rep	three_prime_UTR	25659099	25659236	.	-	.	Parent=Os08t0517200-01
Chr08	irgsp1_rep	three_prime_UTR	25658708	25658773	.	-	.	Parent=Os08t0517200-01
Chr08	irgsp1_rep	three_prime_UTR	25658462	25658557	.	-	.	Parent=Os08t0517200-01
Chr08	irgsp1_rep	three_prime_UTR	25657878	25657988	.	-	.	Parent=Os08t0517200-01
Chr08	irgsp1_rep	three_prime_UTR	25657637	25657801	.	-	.	Parent=Os08t0517200-01
Chr08	irgsp1_rep	three_prime_UTR	25657197	25657256	.	-	.	Parent=Os08t0517200-01
Chr08	irgsp1_rep	three_prime_UTR	25656688	25656852	.	-	.	Parent=Os08t0517200-01
Chr08	irgsp1_rep	three_prime_UTR	25656321	25656437	.	-	.	Parent=Os08t0517200-01
Chr08	irgsp1_rep	three_prime_UTR	25655193	25656205	.	-	.	Parent=Os08t0517200-01
Chr08	irgsp1_rep	three_prime_UTR	25654893	25654994	.	-	.	Parent=Os08t0517200-01
Chr08	irgsp1_rep	three_prime_UTR	25654685	25654729	.	-	.	Parent=Os08t0517200-01
Chr08	irgsp1_rep	three_prime_UTR	25654028	25654588	.	-	.	Parent=Os08t0517200-01
Chr08	irgsp1_rep	three_prime_UTR	25653851	25653942	.	-	.	Parent=Os08t0517200-01
Chr08	irgsp1_rep	three_prime_UTR	25653381	25653478	.	-	.	Parent=Os08t0517200-01
Chr08	irgsp1_rep	three_prime_UTR	25652740	25653296	.	-	.	Parent=Os08t0517200-01
Chr08	irgsp1_rep	mRNA	25652085	25658556	.	-	.	ID=Os08t0517200-02;Name=Os08t0517200-02;Locus_id=Os08g0517200;Oryzabase Gene Symbol Synonym(s)=FCO2;Oryzabase Gene Name Synonym(s)=Functioning in Cesium Over-transport 2;Note=Similar to Cation transporting ATPase%2C C-terminal.;Transcript_evidence=AK107078 (DDBJ%2C Best hit);ORF_evidence=Q94IM5 (UniProt);GO=Biological Process: ATP biosynthetic process (GO:0006754),Biological Process: cation transport (GO:0006812),Biological Process: metabolic process (GO:0008152),Biological Process: calcium ion transmembrane transport (GO:0070588),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: calcium-transporting ATPase activity (GO:0005388),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C catalyzing transmembrane movement of substances (GO:0016820);InterPro=ATPase%2C P-type%2C H+ transporting proton pump (IPR000695),ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),Haloacid dehalogenase-like hydrolase (IPR005834),ATPase%2C P-type cation-transporter%2C C-terminal (IPR006068),ATPase%2C P-type%2C calcium-transporting%2C PMCA-type (IPR006408),HAD-like domain (IPR023214),ATPase%2C P-type%2C  transmembrane domain (IPR023298),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C cation-transporting%2C domain N (IPR023306);NIAS_FLcDNA=002-121-F06;Oryzabase=21691;Expression=AK107078;TENOR=Os08t0517200-02;KEGG=Os08t0517200-02 (EC:3.6.3.8)
Chr08	irgsp1_rep	five_prime_UTR	25658555	25658556	.	-	.	Parent=Os08t0517200-02
Chr08	irgsp1_rep	CDS	25658462	25658554	.	-	0	Parent=Os08t0517200-02
Chr08	irgsp1_rep	CDS	25657878	25657988	.	-	0	Parent=Os08t0517200-02
Chr08	irgsp1_rep	CDS	25657637	25657801	.	-	0	Parent=Os08t0517200-02
Chr08	irgsp1_rep	CDS	25657197	25657256	.	-	0	Parent=Os08t0517200-02
Chr08	irgsp1_rep	CDS	25656688	25656852	.	-	0	Parent=Os08t0517200-02
Chr08	irgsp1_rep	CDS	25656321	25656437	.	-	0	Parent=Os08t0517200-02
Chr08	irgsp1_rep	CDS	25656107	25656205	.	-	0	Parent=Os08t0517200-02
Chr08	irgsp1_rep	CDS	25655193	25655330	.	-	0	Parent=Os08t0517200-02
Chr08	irgsp1_rep	CDS	25654893	25654994	.	-	0	Parent=Os08t0517200-02
Chr08	irgsp1_rep	CDS	25654685	25654729	.	-	0	Parent=Os08t0517200-02
Chr08	irgsp1_rep	CDS	25654454	25654588	.	-	0	Parent=Os08t0517200-02
Chr08	irgsp1_rep	CDS	25654028	25654135	.	-	0	Parent=Os08t0517200-02
Chr08	irgsp1_rep	CDS	25653851	25653942	.	-	0	Parent=Os08t0517200-02
Chr08	irgsp1_rep	CDS	25653381	25653478	.	-	1	Parent=Os08t0517200-02
Chr08	irgsp1_rep	CDS	25653271	25653296	.	-	2	Parent=Os08t0517200-02
Chr08	irgsp1_rep	three_prime_UTR	25653040	25653270	.	-	.	Parent=Os08t0517200-02
Chr08	irgsp1_rep	three_prime_UTR	25652793	25652847	.	-	.	Parent=Os08t0517200-02
Chr08	irgsp1_rep	three_prime_UTR	25652085	25652674	.	-	.	Parent=Os08t0517200-02
Chr08	irgsp1_rep	mRNA	25652873	25656372	.	-	.	ID=Os08t0517200-03;Name=Os08t0517200-03;Locus_id=Os08g0517200;Oryzabase Gene Symbol Synonym(s)=FCO2;Oryzabase Gene Name Synonym(s)=Functioning in Cesium Over-transport 2;Note=Similar to P-type ATPase (Fragment).;Transcript_evidence=AK058787 (DDBJ%2C Best hit);ORF_evidence=Q94IM4 (UniProt);GO=Biological Process: cation transport (GO:0006812),Cellular Component: membrane (GO:0016020),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662);InterPro=ATPase%2C P-type%2C H+ transporting proton pump (IPR000695),ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),ATPase%2C P-type cation-transporter%2C C-terminal (IPR006068),HAD-like domain (IPR023214),ATPase%2C P-type%2C  transmembrane domain (IPR023298);NIAS_FLcDNA=001-002-E05;Oryzabase=21691;Expression=AK058787;TENOR=Os08t0517200-03;KEGG=Os08t0517200-03 (EC:3.6.3.8)
Chr08	irgsp1_rep	five_prime_UTR	25656372	25656372	.	-	.	Parent=Os08t0517200-03
Chr08	irgsp1_rep	CDS	25656321	25656371	.	-	0	Parent=Os08t0517200-03
Chr08	irgsp1_rep	CDS	25656107	25656205	.	-	0	Parent=Os08t0517200-03
Chr08	irgsp1_rep	CDS	25655193	25655330	.	-	0	Parent=Os08t0517200-03
Chr08	irgsp1_rep	CDS	25654893	25654994	.	-	0	Parent=Os08t0517200-03
Chr08	irgsp1_rep	CDS	25654685	25654729	.	-	0	Parent=Os08t0517200-03
Chr08	irgsp1_rep	CDS	25654454	25654588	.	-	0	Parent=Os08t0517200-03
Chr08	irgsp1_rep	CDS	25654028	25654135	.	-	0	Parent=Os08t0517200-03
Chr08	irgsp1_rep	CDS	25653851	25653942	.	-	0	Parent=Os08t0517200-03
Chr08	irgsp1_rep	CDS	25653381	25653478	.	-	1	Parent=Os08t0517200-03
Chr08	irgsp1_rep	CDS	25653271	25653296	.	-	2	Parent=Os08t0517200-03
Chr08	irgsp1_rep	three_prime_UTR	25652873	25653270	.	-	.	Parent=Os08t0517200-03
Chr08	irgsp1_rep	mRNA	25677128	25682344	.	-	.	ID=Os08t0517300-01;Name=Os08t0517300-01;Locus_id=Os08g0517300;Oryzabase Gene Symbol Synonym(s)=ZOS8-11;Note=Zinc finger%2C C2H2-like domain containing protein.;Transcript_evidence=AK069175 (DDBJ%2C Best hit);ORF_evidence=Q94FY3 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Arsenite-resistance protein 2 (IPR007042),Zinc finger%2C C2H2 (IPR007087),Protein of unknown function DUF3546 (IPR021933);NIAS_FLcDNA=J023007J12;Oryzabase=12402;Expression=AK069175;TENOR=Os08t0517300-01;KEGG=Os08t0517300-01
Chr08	irgsp1_rep	five_prime_UTR	25682231	25682344	.	-	.	Parent=Os08t0517300-01
Chr08	irgsp1_rep	CDS	25682001	25682230	.	-	0	Parent=Os08t0517300-01
Chr08	irgsp1_rep	CDS	25681173	25681258	.	-	1	Parent=Os08t0517300-01
Chr08	irgsp1_rep	CDS	25680856	25680910	.	-	2	Parent=Os08t0517300-01
Chr08	irgsp1_rep	CDS	25680480	25680554	.	-	1	Parent=Os08t0517300-01
Chr08	irgsp1_rep	CDS	25680295	25680369	.	-	1	Parent=Os08t0517300-01
Chr08	irgsp1_rep	CDS	25680149	25680196	.	-	1	Parent=Os08t0517300-01
Chr08	irgsp1_rep	CDS	25679938	25680006	.	-	1	Parent=Os08t0517300-01
Chr08	irgsp1_rep	CDS	25679075	25679854	.	-	1	Parent=Os08t0517300-01
Chr08	irgsp1_rep	CDS	25678943	25678991	.	-	1	Parent=Os08t0517300-01
Chr08	irgsp1_rep	CDS	25678642	25678853	.	-	0	Parent=Os08t0517300-01
Chr08	irgsp1_rep	CDS	25678366	25678569	.	-	1	Parent=Os08t0517300-01
Chr08	irgsp1_rep	CDS	25677334	25677394	.	-	1	Parent=Os08t0517300-01
Chr08	irgsp1_rep	three_prime_UTR	25677128	25677333	.	-	.	Parent=Os08t0517300-01
Chr08	irgsp1_rep	mRNA	25676759	25682335	.	-	.	ID=Os08t0517300-02;Name=Os08t0517300-02;Locus_id=Os08g0517300;Oryzabase Gene Symbol Synonym(s)=ZOS8-11;Note=Hypothetical conserved gene.;Transcript_evidence=AK120996 (DDBJ%2C Best hit);ORF_evidence=B8B8W4 (UniProt);InterPro=Protein of unknown function DUF3546 (IPR021933);NIAS_FLcDNA=J023044G03;Oryzabase=12402;Expression=AK120996;TENOR=Os08t0517300-02;KEGG=Os08t0517300-02
Chr08	irgsp1_rep	five_prime_UTR	25682231	25682335	.	-	.	Parent=Os08t0517300-02
Chr08	irgsp1_rep	CDS	25682001	25682230	.	-	0	Parent=Os08t0517300-02
Chr08	irgsp1_rep	CDS	25681173	25681258	.	-	1	Parent=Os08t0517300-02
Chr08	irgsp1_rep	CDS	25680856	25680910	.	-	2	Parent=Os08t0517300-02
Chr08	irgsp1_rep	CDS	25680480	25680554	.	-	1	Parent=Os08t0517300-02
Chr08	irgsp1_rep	CDS	25680295	25680369	.	-	1	Parent=Os08t0517300-02
Chr08	irgsp1_rep	CDS	25679998	25680196	.	-	1	Parent=Os08t0517300-02
Chr08	irgsp1_rep	three_prime_UTR	25679938	25679997	.	-	.	Parent=Os08t0517300-02
Chr08	irgsp1_rep	three_prime_UTR	25678943	25679854	.	-	.	Parent=Os08t0517300-02
Chr08	irgsp1_rep	three_prime_UTR	25678642	25678853	.	-	.	Parent=Os08t0517300-02
Chr08	irgsp1_rep	three_prime_UTR	25678366	25678569	.	-	.	Parent=Os08t0517300-02
Chr08	irgsp1_rep	three_prime_UTR	25676759	25677394	.	-	.	Parent=Os08t0517300-02
Chr08	irgsp1_rep	mRNA	25683618	25686522	.	-	.	ID=Os08t0517500-01;Name=Os08t0517500-01;Locus_id=Os08g0517500;Note=FMN-binding split barrel domain containing protein.;Transcript_evidence=AK059263 (DDBJ%2C Best hit),AK065593 (DDBJ%2C Best hit);ORF_evidence=B6TNA5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: pyridoxamine-phosphate oxidase activity (GO:0004733),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FMN-binding split barrel-related (IPR009002),Pyridoxamine 5'-phosphate oxidase-like%2C FMN-binding domain (IPR011576),FMN-binding split barrel (IPR012349);NIAS_FLcDNA=001-025-A10,J013026C01;Expression=AK059263;TENOR=Os08t0517500-01;KEGG=Os08t0517500-01
Chr08	irgsp1_rep	five_prime_UTR	25686437	25686522	.	-	.	Parent=Os08t0517500-01
Chr08	irgsp1_rep	CDS	25686230	25686436	.	-	0	Parent=Os08t0517500-01
Chr08	irgsp1_rep	CDS	25685516	25685731	.	-	0	Parent=Os08t0517500-01
Chr08	irgsp1_rep	CDS	25685321	25685423	.	-	0	Parent=Os08t0517500-01
Chr08	irgsp1_rep	CDS	25685152	25685231	.	-	2	Parent=Os08t0517500-01
Chr08	irgsp1_rep	CDS	25684993	25685070	.	-	0	Parent=Os08t0517500-01
Chr08	irgsp1_rep	CDS	25684536	25684627	.	-	0	Parent=Os08t0517500-01
Chr08	irgsp1_rep	CDS	25684265	25684376	.	-	1	Parent=Os08t0517500-01
Chr08	irgsp1_rep	CDS	25683968	25684093	.	-	0	Parent=Os08t0517500-01
Chr08	irgsp1_rep	CDS	25683765	25683866	.	-	0	Parent=Os08t0517500-01
Chr08	irgsp1_rep	three_prime_UTR	25683618	25683764	.	-	.	Parent=Os08t0517500-01
Chr08	irgsp1_rep	mRNA	25687727	25690627	.	-	.	ID=Os08t0517600-01;Name=Os08t0517600-01;Locus_id=Os08g0517600;Note=Similar to Methylase.;Transcript_evidence=AK073374 (DDBJ%2C Best hit);ORF_evidence=B4FH40 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Methyltransferase type 11 (IPR013216);NIAS_FLcDNA=J033029M19;Expression=AK073374;TENOR=Os08t0517600-01;KEGG=Os08t0517600-01
Chr08	irgsp1_rep	five_prime_UTR	25690536	25690627	.	-	.	Parent=Os08t0517600-01
Chr08	irgsp1_rep	CDS	25690343	25690535	.	-	0	Parent=Os08t0517600-01
Chr08	irgsp1_rep	CDS	25689018	25689131	.	-	2	Parent=Os08t0517600-01
Chr08	irgsp1_rep	CDS	25688852	25688920	.	-	2	Parent=Os08t0517600-01
Chr08	irgsp1_rep	CDS	25688734	25688753	.	-	2	Parent=Os08t0517600-01
Chr08	irgsp1_rep	CDS	25688600	25688652	.	-	0	Parent=Os08t0517600-01
Chr08	irgsp1_rep	CDS	25688492	25688522	.	-	1	Parent=Os08t0517600-01
Chr08	irgsp1_rep	CDS	25688327	25688405	.	-	0	Parent=Os08t0517600-01
Chr08	irgsp1_rep	CDS	25688005	25688135	.	-	2	Parent=Os08t0517600-01
Chr08	irgsp1_rep	CDS	25687879	25687914	.	-	0	Parent=Os08t0517600-01
Chr08	irgsp1_rep	three_prime_UTR	25687727	25687878	.	-	.	Parent=Os08t0517600-01
Chr08	irgsp1_rep	mRNA	25687638	25690627	.	-	.	ID=Os08t0517600-02;Name=Os08t0517600-02;Locus_id=Os08g0517600;Note=Methyltransferase type 11 domain containing protein.;Transcript_evidence=AK105385 (DDBJ%2C Best hit);ORF_evidence=B4FH40 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Methyltransferase type 11 (IPR013216);NIAS_FLcDNA=001-121-G10;Expression=AK105385;TENOR=Os08t0517600-02;KEGG=Os08t0517600-02
Chr08	irgsp1_rep	five_prime_UTR	25690536	25690627	.	-	.	Parent=Os08t0517600-02
Chr08	irgsp1_rep	CDS	25690343	25690535	.	-	0	Parent=Os08t0517600-02
Chr08	irgsp1_rep	CDS	25689018	25689131	.	-	2	Parent=Os08t0517600-02
Chr08	irgsp1_rep	CDS	25688852	25688920	.	-	2	Parent=Os08t0517600-02
Chr08	irgsp1_rep	CDS	25688734	25688753	.	-	2	Parent=Os08t0517600-02
Chr08	irgsp1_rep	CDS	25688600	25688652	.	-	0	Parent=Os08t0517600-02
Chr08	irgsp1_rep	CDS	25688492	25688522	.	-	1	Parent=Os08t0517600-02
Chr08	irgsp1_rep	CDS	25688327	25688405	.	-	0	Parent=Os08t0517600-02
Chr08	irgsp1_rep	CDS	25688097	25688131	.	-	2	Parent=Os08t0517600-02
Chr08	irgsp1_rep	three_prime_UTR	25688005	25688096	.	-	.	Parent=Os08t0517600-02
Chr08	irgsp1_rep	three_prime_UTR	25687638	25687919	.	-	.	Parent=Os08t0517600-02
Chr08	irgsp1_rep	mRNA	25688004	25690561	.	+	.	ID=Os08t0517650-00;Name=Os08t0517650-00;Locus_id=Os08g0517650;Note=Non-protein coding transcript.;Transcript_evidence=BT019041 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0517650-00
Chr08	irgsp1_rep	exon	25688004	25688149	.	+	.	Parent=Os08t0517650-00
Chr08	irgsp1_rep	exon	25688340	25688427	.	+	.	Parent=Os08t0517650-00
Chr08	irgsp1_rep	exon	25688588	25688663	.	+	.	Parent=Os08t0517650-00
Chr08	irgsp1_rep	exon	25688842	25688929	.	+	.	Parent=Os08t0517650-00
Chr08	irgsp1_rep	exon	25689025	25689133	.	+	.	Parent=Os08t0517650-00
Chr08	irgsp1_rep	exon	25690348	25690561	.	+	.	Parent=Os08t0517650-00
Chr08	irgsp1_rep	mRNA	25695174	25699581	.	+	.	ID=Os08t0517700-01;Name=Os08t0517700-01;Locus_id=Os08g0517700;Note=Oxysterol-binding protein family protein.;Transcript_evidence=AK071151 (DDBJ%2C Best hit);ORF_evidence=B6U0I9 (UniProt);InterPro=Oxysterol-binding protein (IPR000648),Oxysterol-binding protein%2C conserved site (IPR018494);NIAS_FLcDNA=J023078B20;Expression=AK071151;TENOR=Os08t0517700-01;KEGG=Os08t0517700-01
Chr08	irgsp1_rep	five_prime_UTR	25695174	25695287	.	+	.	Parent=Os08t0517700-01
Chr08	irgsp1_rep	CDS	25695288	25695290	.	+	0	Parent=Os08t0517700-01
Chr08	irgsp1_rep	CDS	25696741	25696908	.	+	0	Parent=Os08t0517700-01
Chr08	irgsp1_rep	CDS	25697884	25698129	.	+	0	Parent=Os08t0517700-01
Chr08	irgsp1_rep	CDS	25698274	25698370	.	+	0	Parent=Os08t0517700-01
Chr08	irgsp1_rep	CDS	25698475	25698872	.	+	2	Parent=Os08t0517700-01
Chr08	irgsp1_rep	CDS	25699255	25699509	.	+	0	Parent=Os08t0517700-01
Chr08	irgsp1_rep	three_prime_UTR	25699510	25699581	.	+	.	Parent=Os08t0517700-01
Chr08	irgsp1_rep	mRNA	25696728	25699582	.	+	.	ID=Os08t0517700-02;Name=Os08t0517700-02;Locus_id=Os08g0517700;Note=Similar to Oxysterol-binding protein OBPa.;Transcript_evidence=AK106135 (DDBJ%2C Best hit);ORF_evidence=B6U0I9 (UniProt);InterPro=Oxysterol-binding protein (IPR000648),Oxysterol-binding protein%2C conserved site (IPR018494);NIAS_FLcDNA=001-207-G03;Expression=AK106135;TENOR=Os08t0517700-02;KEGG=Os08t0517700-02
Chr08	irgsp1_rep	five_prime_UTR	25696728	25696728	.	+	.	Parent=Os08t0517700-02
Chr08	irgsp1_rep	CDS	25696729	25696908	.	+	0	Parent=Os08t0517700-02
Chr08	irgsp1_rep	CDS	25697884	25698129	.	+	0	Parent=Os08t0517700-02
Chr08	irgsp1_rep	CDS	25698274	25698370	.	+	0	Parent=Os08t0517700-02
Chr08	irgsp1_rep	CDS	25698475	25698872	.	+	2	Parent=Os08t0517700-02
Chr08	irgsp1_rep	CDS	25699255	25699509	.	+	0	Parent=Os08t0517700-02
Chr08	irgsp1_rep	three_prime_UTR	25699510	25699582	.	+	.	Parent=Os08t0517700-02
Chr08	irgsp1_rep	mRNA	25697852	25698875	.	-	.	ID=Os08t0517750-00;Name=Os08t0517750-00;Locus_id=Os08g0517750;Note=Hypothetical gene.;Transcript_evidence=EU975010 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0517750-00
Chr08	irgsp1_rep	five_prime_UTR	25698474	25698875	.	-	.	Parent=Os08t0517750-00
Chr08	irgsp1_rep	five_prime_UTR	25698307	25698369	.	-	.	Parent=Os08t0517750-00
Chr08	irgsp1_rep	CDS	25698226	25698306	.	-	0	Parent=Os08t0517750-00
Chr08	irgsp1_rep	CDS	25697958	25698095	.	-	0	Parent=Os08t0517750-00
Chr08	irgsp1_rep	three_prime_UTR	25697852	25697957	.	-	.	Parent=Os08t0517750-00
Chr08	irgsp1_rep	mRNA	25700609	25701623	.	-	.	ID=Os08t0517800-00;Name=Os08t0517800-00;Locus_id=Os08g0517800;Note=Similar to Thaumatin-like protein.;Transcript_evidence=BT086011 (DDBJ);ORF_evidence=Q9FLU2 (UniProt);InterPro=Thaumatin%2C pathogenesis-related (IPR001938);TENOR=Os08t0517800-00;KEGG=Os08t0517800-00
Chr08	irgsp1_rep	CDS	25701029	25701623	.	-	0	Parent=Os08t0517800-00
Chr08	irgsp1_rep	CDS	25700609	25700943	.	-	2	Parent=Os08t0517800-00
Chr08	irgsp1_rep	mRNA	25702642	25704345	.	-	.	ID=Os08t0517900-01;Name=Os08t0517900-01;Locus_id=Os08g0517900;Oryzabase Gene Symbol Synonym(s)=RPS16%2C OsRPS16%2C rps16;Oryzabase Gene Name Synonym(s)=ribosomal protein S16%2C ribosomal protein small subunit 16;Note=Similar to 30S ribosomal protein S16.;Transcript_evidence=AK064304 (DDBJ%2C Best hit);ORF_evidence=B4FVT8 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S16 (IPR000307),Ribosomal protein S16 domain (IPR023803);NIAS_FLcDNA=002-107-B06;Oryzabase=22694;Expression=AK064304;TENOR=Os08t0517900-01;KEGG=Os08t0517900-01
Chr08	irgsp1_rep	five_prime_UTR	25704257	25704345	.	-	.	Parent=Os08t0517900-01
Chr08	irgsp1_rep	CDS	25704124	25704256	.	-	0	Parent=Os08t0517900-01
Chr08	irgsp1_rep	CDS	25703850	25703895	.	-	2	Parent=Os08t0517900-01
Chr08	irgsp1_rep	CDS	25702864	25703098	.	-	1	Parent=Os08t0517900-01
Chr08	irgsp1_rep	three_prime_UTR	25702642	25702863	.	-	.	Parent=Os08t0517900-01
Chr08	irgsp1_rep	mRNA	25707694	25708486	.	+	.	ID=Os08t0518000-01;Name=Os08t0518000-01;Locus_id=Os08g0518000;Note=Conserved hypothetical protein.;Transcript_evidence=AK241506 (DDBJ%2C Best hit);ORF_evidence=NP_001062248.2 (RefSeq);NIAS_FLcDNA=J065168C22;TENOR=Os08t0518000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	25707694	25707732	.	+	.	Parent=Os08t0518000-01
Chr08	irgsp1_rep	CDS	25707733	25708215	.	+	0	Parent=Os08t0518000-01
Chr08	irgsp1_rep	three_prime_UTR	25708216	25708486	.	+	.	Parent=Os08t0518000-01
Chr08	irgsp1_rep	mRNA	25712814	25717475	.	+	.	ID=Os08t0518100-01;Name=Os08t0518100-01;Locus_id=Os08g0518100;Oryzabase Gene Symbol Synonym(s)=MAP;Oryzabase Gene Name Synonym(s)=MICROTUBULE-ASSOCIATED PROTEIN;Note=RabGAP/TBC domain containing protein.;Transcript_evidence=AK066731 (DDBJ%2C Best hit);ORF_evidence=B8B8T2 (UniProt);GO=Biological Process: regulation of Rab GTPase activity (GO:0032313),Cellular Component: intracellular (GO:0005622),Molecular Function: Rab GTPase activator activity (GO:0005097);InterPro=Rab-GAP/TBC domain (IPR000195);NIAS_FLcDNA=J013074L23;Oryzabase=12401;Expression=AK066731;TENOR=Os08t0518100-01;KEGG=Os08t0518100-01
Chr08	irgsp1_rep	five_prime_UTR	25712814	25713250	.	+	.	Parent=Os08t0518100-01
Chr08	irgsp1_rep	CDS	25713251	25713390	.	+	0	Parent=Os08t0518100-01
Chr08	irgsp1_rep	CDS	25713855	25713958	.	+	1	Parent=Os08t0518100-01
Chr08	irgsp1_rep	CDS	25714350	25714526	.	+	2	Parent=Os08t0518100-01
Chr08	irgsp1_rep	CDS	25715017	25716950	.	+	2	Parent=Os08t0518100-01
Chr08	irgsp1_rep	CDS	25717023	25717172	.	+	0	Parent=Os08t0518100-01
Chr08	irgsp1_rep	three_prime_UTR	25717173	25717475	.	+	.	Parent=Os08t0518100-01
Chr08	irgsp1_rep	mRNA	25715793	25717475	.	+	.	ID=Os08t0518100-02;Name=Os08t0518100-02;Locus_id=Os08g0518100;Oryzabase Gene Symbol Synonym(s)=MAP;Oryzabase Gene Name Synonym(s)=MICROTUBULE-ASSOCIATED PROTEIN;Note=Hypothetical conserved gene.;Transcript_evidence=AK066492 (DDBJ%2C Best hit);ORF_evidence=B8B8T2 (UniProt);NIAS_FLcDNA=J013074C01;Oryzabase=12401;Expression=AK066492;TENOR=Os08t0518100-02;KEGG=Os08t0518100-02
Chr08	irgsp1_rep	CDS	25715793	25716950	.	+	0	Parent=Os08t0518100-02
Chr08	irgsp1_rep	CDS	25717023	25717172	.	+	0	Parent=Os08t0518100-02
Chr08	irgsp1_rep	three_prime_UTR	25717173	25717475	.	+	.	Parent=Os08t0518100-02
Chr08	irgsp1_rep	mRNA	25713233	25715881	.	-	.	ID=Os08t0518150-00;Name=Os08t0518150-00;Locus_id=Os08g0518150;Note=Hypothetical protein.;Transcript_evidence=tplb0060h12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0518150-00
Chr08	irgsp1_rep	five_prime_UTR	25714995	25715881	.	-	.	Parent=Os08t0518150-00
Chr08	irgsp1_rep	five_prime_UTR	25714338	25714495	.	-	.	Parent=Os08t0518150-00
Chr08	irgsp1_rep	five_prime_UTR	25713920	25713946	.	-	.	Parent=Os08t0518150-00
Chr08	irgsp1_rep	CDS	25713872	25713919	.	-	0	Parent=Os08t0518150-00
Chr08	irgsp1_rep	CDS	25713233	25713405	.	-	0	Parent=Os08t0518150-00
Chr08	irgsp1_rep	mRNA	25719480	25721907	.	-	.	ID=Os08t0518200-01;Name=Os08t0518200-01;Locus_id=Os08g0518200;Note=Mitochodrial transcription termination factor-related family protein.;Transcript_evidence=AK063992 (DDBJ%2C Best hit),AK102043 (DDBJ%2C Best hit);ORF_evidence=NP_001152516.1 (RefSeq);InterPro=Mitochodrial transcription termination factor-related (IPR003690);NIAS_FLcDNA=001-124-E07,J033081L13;Expression=AK063992;TENOR=Os08t0518200-01;KEGG=Os08t0518200-01
Chr08	irgsp1_rep	five_prime_UTR	25721576	25721907	.	-	.	Parent=Os08t0518200-01
Chr08	irgsp1_rep	CDS	25719665	25721575	.	-	0	Parent=Os08t0518200-01
Chr08	irgsp1_rep	three_prime_UTR	25719480	25719664	.	-	.	Parent=Os08t0518200-01
Chr08	irgsp1_rep	mRNA	25723067	25729449	.	-	.	ID=Os08t0518300-00;Name=Os08t0518300-00;Locus_id=Os08g0518300;Oryzabase Gene Symbol Synonym(s)=Os_F0488;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK335036 (DDBJ);ORF_evidence=B8B8T4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated domain%2C type 3 (IPR013187),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17537;TENOR=Os08t0518300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	25729439	25729449	.	-	.	Parent=Os08t0518300-00
Chr08	irgsp1_rep	CDS	25728388	25729438	.	-	0	Parent=Os08t0518300-00
Chr08	irgsp1_rep	CDS	25723293	25723309	.	-	2	Parent=Os08t0518300-00
Chr08	irgsp1_rep	three_prime_UTR	25723067	25723292	.	-	.	Parent=Os08t0518300-00
Chr08	irgsp1_rep	mRNA	25731417	25731809	.	-	.	ID=Os08t0518350-00;Name=Os08t0518350-00;Locus_id=Os08g0518350;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q84Z83 (UniProt);TENOR=Os08t0518350-00
Chr08	irgsp1_rep	CDS	25731417	25731809	.	-	0	Parent=Os08t0518350-00
Chr08	irgsp1_rep	mRNA	25738339	25743155	.	+	.	ID=Os08t0518400-00;Name=Os08t0518400-00;Locus_id=Os08g0518400;Note=Malectin-like carbohydrate-binding domain domain containing protein.;Transcript_evidence=AK365332 (DDBJ);ORF_evidence=NP_001062252.1 (RefSeq);InterPro=Malectin-like carbohydrate-binding domain (IPR024788);TENOR=Os08t0518400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	25738339	25738661	.	+	.	Parent=Os08t0518400-00
Chr08	irgsp1_rep	five_prime_UTR	25738738	25738757	.	+	.	Parent=Os08t0518400-00
Chr08	irgsp1_rep	CDS	25738758	25739259	.	+	0	Parent=Os08t0518400-00
Chr08	irgsp1_rep	CDS	25739640	25739778	.	+	2	Parent=Os08t0518400-00
Chr08	irgsp1_rep	CDS	25739890	25739950	.	+	1	Parent=Os08t0518400-00
Chr08	irgsp1_rep	three_prime_UTR	25739951	25739961	.	+	.	Parent=Os08t0518400-00
Chr08	irgsp1_rep	three_prime_UTR	25741047	25741118	.	+	.	Parent=Os08t0518400-00
Chr08	irgsp1_rep	three_prime_UTR	25741202	25741424	.	+	.	Parent=Os08t0518400-00
Chr08	irgsp1_rep	three_prime_UTR	25742123	25742389	.	+	.	Parent=Os08t0518400-00
Chr08	irgsp1_rep	three_prime_UTR	25742543	25742669	.	+	.	Parent=Os08t0518400-00
Chr08	irgsp1_rep	three_prime_UTR	25742757	25742828	.	+	.	Parent=Os08t0518400-00
Chr08	irgsp1_rep	three_prime_UTR	25742990	25743155	.	+	.	Parent=Os08t0518400-00
Chr08	irgsp1_rep	mRNA	25749821	25751374	.	-	.	ID=Os08t0518600-01;Name=Os08t0518600-01;Locus_id=Os08g0518600;Note=Conserved hypothetical protein.;Transcript_evidence=AK071227 (DDBJ%2C Best hit);ORF_evidence=Q7XVW3 (UniProt);NIAS_FLcDNA=J023088I15;TENOR=Os08t0518600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	25750514	25751374	.	-	.	Parent=Os08t0518600-01
Chr08	irgsp1_rep	CDS	25750268	25750513	.	-	0	Parent=Os08t0518600-01
Chr08	irgsp1_rep	three_prime_UTR	25749821	25750267	.	-	.	Parent=Os08t0518600-01
Chr08	irgsp1_rep	mRNA	25758874	25759533	.	-	.	ID=Os08t0518800-01;Name=Os08t0518800-01;Locus_id=Os08g0518800;Oryzabase Gene Symbol Synonym(s)=OsGH;Oryzabase Gene Name Synonym(s)=glycosyl hydrolase;Note=Similar to Class III chitinase homologue (OsChib3H-h) (Fragment).;Transcript_evidence=AK064180 (DDBJ%2C Best hit);ORF_evidence=Q53NL5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=002-104-B05;Oryzabase=12482;Expression=AK064180;TENOR=Os08t0518800-01;KEGG=Os08t0518800-01
Chr08	irgsp1_rep	five_prime_UTR	25759532	25759533	.	-	.	Parent=Os08t0518800-01
Chr08	irgsp1_rep	CDS	25758986	25759531	.	-	0	Parent=Os08t0518800-01
Chr08	irgsp1_rep	three_prime_UTR	25758874	25758985	.	-	.	Parent=Os08t0518800-01
Chr08	irgsp1_rep	mRNA	25762457	25763823	.	+	.	ID=Os08t0518900-01;Name=Os08t0518900-01;Locus_id=Os08g0518900;Oryzabase Gene Symbol Synonym(s)=C10122;Note=Chitinase (EC 3.2.1.14).;Transcript_evidence=AK073267 (DDBJ%2C Best hit);ORF_evidence=Q7GCM0 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 18%2C catalytic domain (IPR001223),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J033025L23;Oryzabase=13796;Expression=AK073267;TENOR=Os08t0518900-01;KEGG=Os08t0518900-01 (EC:3.2.1.14)
Chr08	irgsp1_rep	five_prime_UTR	25762457	25762497	.	+	.	Parent=Os08t0518900-01
Chr08	irgsp1_rep	CDS	25762498	25763445	.	+	0	Parent=Os08t0518900-01
Chr08	irgsp1_rep	three_prime_UTR	25763446	25763823	.	+	.	Parent=Os08t0518900-01
Chr08	irgsp1_rep	mRNA	25764973	25765963	.	+	.	ID=Os08t0519000-00;Name=Os08t0519000-00;Locus_id=Os08g0519000;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7EZA8 (UniProt);TENOR=Os08t0519000-00;KEGG=Os08t0519000-00
Chr08	irgsp1_rep	CDS	25764973	25765093	.	+	0	Parent=Os08t0519000-00
Chr08	irgsp1_rep	CDS	25765389	25765490	.	+	2	Parent=Os08t0519000-00
Chr08	irgsp1_rep	CDS	25765564	25765628	.	+	2	Parent=Os08t0519000-00
Chr08	irgsp1_rep	CDS	25765712	25765963	.	+	0	Parent=Os08t0519000-00
Chr08	irgsp1_rep	mRNA	25769815	25771549	.	-	.	ID=Os08t0519100-01;Name=Os08t0519100-01;Locus_id=Os08g0519100;Note=D-arabinono-1%2C4-lactone oxidase domain containing protein.;Transcript_evidence=AK063323 (DDBJ%2C Best hit);ORF_evidence=B8B8T5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: D-arabinono-1%2C4-lactone oxidase activity (GO:0003885),Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=FAD linked oxidase%2C N-terminal (IPR006094),D-arabinono-1%2C4-lactone oxidase (IPR007173),FAD-binding%2C type 2 (IPR016166),FAD-linked oxidase%2C FAD-binding%2C subdomain 2 (IPR016168);NIAS_FLcDNA=001-113-H04;Expression=AK063323;TENOR=Os08t0519100-01;KEGG=Os08t0519100-01
Chr08	irgsp1_rep	five_prime_UTR	25771519	25771549	.	-	.	Parent=Os08t0519100-01
Chr08	irgsp1_rep	CDS	25770188	25771518	.	-	0	Parent=Os08t0519100-01
Chr08	irgsp1_rep	CDS	25769992	25770013	.	-	1	Parent=Os08t0519100-01
Chr08	irgsp1_rep	three_prime_UTR	25769815	25769991	.	-	.	Parent=Os08t0519100-01
Chr08	irgsp1_rep	mRNA	25769814	25771549	.	-	.	ID=Os08t0519100-02;Name=Os08t0519100-02;Locus_id=Os08g0519100;Note=Hypothetical conserved gene.;Transcript_evidence=AK063287 (DDBJ%2C Best hit);ORF_evidence=B8B8T5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: D-arabinono-1%2C4-lactone oxidase activity (GO:0003885),Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=FAD linked oxidase%2C N-terminal (IPR006094),D-arabinono-1%2C4-lactone oxidase (IPR007173),FAD-binding%2C type 2 (IPR016166),FAD-linked oxidase%2C FAD-binding%2C subdomain 2 (IPR016168);NIAS_FLcDNA=001-113-D10;Expression=AK063287;TENOR=Os08t0519100-02;KEGG=Os08t0519100-02
Chr08	irgsp1_rep	five_prime_UTR	25771519	25771549	.	-	.	Parent=Os08t0519100-02
Chr08	irgsp1_rep	CDS	25769992	25771518	.	-	0	Parent=Os08t0519100-02
Chr08	irgsp1_rep	three_prime_UTR	25769814	25769991	.	-	.	Parent=Os08t0519100-02
Chr08	irgsp1_rep	mRNA	25778245	25779466	.	-	.	ID=Os08t0519300-00;Name=Os08t0519300-00;Locus_id=Os08g0519300;Note=Glycoside hydrolase%2C family 18%2C catalytic domain domain containing protein.;Transcript_evidence=FP093670 (DDBJ);ORF_evidence=GeneMark;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 18%2C catalytic domain (IPR001223),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);TENOR=Os08t0519300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	25779407	25779466	.	-	.	Parent=Os08t0519300-00
Chr08	irgsp1_rep	CDS	25778885	25779406	.	-	0	Parent=Os08t0519300-00
Chr08	irgsp1_rep	three_prime_UTR	25778245	25778884	.	-	.	Parent=Os08t0519300-00
Chr08	irgsp1_rep	mRNA	25799139	25804041	.	-	.	ID=Os08t0519400-01;Name=Os08t0519400-01;Locus_id=Os08g0519400;Oryzabase Gene Symbol Synonym(s)=BIP129;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 129%2C BRI1-interacting protein 129%2C brassinosteroid receptor kinase-interacting protein 129;Note=Apolipoprotein/apolipophorin domain containing protein.;Transcript_evidence=AK070323 (DDBJ%2C Best hit);ORF_evidence=NP_567873.1 (RefSeq);InterPro=Apolipoprotein/apolipophorin (IPR013326);NIAS_FLcDNA=J023052N10;Oryzabase=13680;Expression=AK070323;TENOR=Os08t0519400-01;KEGG=Os08t0519400-01
Chr08	irgsp1_rep	five_prime_UTR	25803860	25804041	.	-	.	Parent=Os08t0519400-01
Chr08	irgsp1_rep	CDS	25803658	25803859	.	-	0	Parent=Os08t0519400-01
Chr08	irgsp1_rep	CDS	25802648	25802775	.	-	2	Parent=Os08t0519400-01
Chr08	irgsp1_rep	CDS	25802487	25802558	.	-	0	Parent=Os08t0519400-01
Chr08	irgsp1_rep	CDS	25802295	25802408	.	-	0	Parent=Os08t0519400-01
Chr08	irgsp1_rep	CDS	25801721	25801789	.	-	0	Parent=Os08t0519400-01
Chr08	irgsp1_rep	CDS	25801576	25801632	.	-	0	Parent=Os08t0519400-01
Chr08	irgsp1_rep	CDS	25801137	25801190	.	-	0	Parent=Os08t0519400-01
Chr08	irgsp1_rep	CDS	25800984	25801046	.	-	0	Parent=Os08t0519400-01
Chr08	irgsp1_rep	CDS	25800828	25800890	.	-	0	Parent=Os08t0519400-01
Chr08	irgsp1_rep	CDS	25800591	25800752	.	-	0	Parent=Os08t0519400-01
Chr08	irgsp1_rep	CDS	25800328	25800483	.	-	0	Parent=Os08t0519400-01
Chr08	irgsp1_rep	CDS	25799963	25800043	.	-	0	Parent=Os08t0519400-01
Chr08	irgsp1_rep	CDS	25799832	25799893	.	-	0	Parent=Os08t0519400-01
Chr08	irgsp1_rep	CDS	25799652	25799727	.	-	1	Parent=Os08t0519400-01
Chr08	irgsp1_rep	three_prime_UTR	25799606	25799651	.	-	.	Parent=Os08t0519400-01
Chr08	irgsp1_rep	three_prime_UTR	25799139	25799469	.	-	.	Parent=Os08t0519400-01
Chr08	irgsp1_rep	mRNA	25803437	25804334	.	+	.	ID=Os08t0519501-01;Name=Os08t0519501-01;Locus_id=Os08g0519501;Note=Hypothetical gene.;Transcript_evidence=AK109201 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-156-C03;Expression=AK109201;TENOR=Os08t0519501-01;KEGG=Os08t0519501-01
Chr08	irgsp1_rep	five_prime_UTR	25803437	25803437	.	+	.	Parent=Os08t0519501-01
Chr08	irgsp1_rep	CDS	25803438	25803953	.	+	0	Parent=Os08t0519501-01
Chr08	irgsp1_rep	three_prime_UTR	25803954	25804334	.	+	.	Parent=Os08t0519501-01
Chr08	irgsp1_rep	mRNA	25817761	25823064	.	+	.	ID=Os08t0519600-01;Name=Os08t0519600-01;Locus_id=Os08g0519600;Note=Protein of unknown function DUF1666 family protein.;Transcript_evidence=AK105273 (DDBJ%2C Best hit);ORF_evidence=B7EKP5 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L34Ae (IPR008195),Protein of unknown function DUF1666 (IPR012870);NIAS_FLcDNA=001-115-H02;Expression=AK105273;TENOR=Os08t0519600-01;KEGG=Os08t0519600-01
Chr08	irgsp1_rep	five_prime_UTR	25817761	25818022	.	+	.	Parent=Os08t0519600-01
Chr08	irgsp1_rep	five_prime_UTR	25818151	25818261	.	+	.	Parent=Os08t0519600-01
Chr08	irgsp1_rep	CDS	25818262	25818754	.	+	0	Parent=Os08t0519600-01
Chr08	irgsp1_rep	CDS	25819376	25819783	.	+	2	Parent=Os08t0519600-01
Chr08	irgsp1_rep	CDS	25821924	25822120	.	+	2	Parent=Os08t0519600-01
Chr08	irgsp1_rep	CDS	25822654	25822899	.	+	0	Parent=Os08t0519600-01
Chr08	irgsp1_rep	three_prime_UTR	25822900	25823064	.	+	.	Parent=Os08t0519600-01
Chr08	irgsp1_rep	mRNA	25817830	25823466	.	+	.	ID=Os08t0519600-02;Name=Os08t0519600-02;Locus_id=Os08g0519600;Note=Similar to predicted protein.;Transcript_evidence=AK072374 (DDBJ%2C Best hit);ORF_evidence=B9G1U1 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L34Ae (IPR008195),Protein of unknown function DUF1666 (IPR012870);NIAS_FLcDNA=J023065D24;Expression=AK072374;TENOR=Os08t0519600-02;KEGG=Os08t0519600-02
Chr08	irgsp1_rep	five_prime_UTR	25817830	25818022	.	+	.	Parent=Os08t0519600-02
Chr08	irgsp1_rep	five_prime_UTR	25818151	25818261	.	+	.	Parent=Os08t0519600-02
Chr08	irgsp1_rep	CDS	25818262	25818754	.	+	0	Parent=Os08t0519600-02
Chr08	irgsp1_rep	CDS	25819376	25819821	.	+	2	Parent=Os08t0519600-02
Chr08	irgsp1_rep	three_prime_UTR	25819822	25822120	.	+	.	Parent=Os08t0519600-02
Chr08	irgsp1_rep	three_prime_UTR	25822654	25823466	.	+	.	Parent=Os08t0519600-02
Chr08	irgsp1_rep	mRNA	25829944	25834691	.	+	.	ID=Os08t0519700-01;Name=Os08t0519700-01;Locus_id=Os08g0519700;Note=Protein of unknown function DUF630 domain containing protein.;Transcript_evidence=AK064559 (DDBJ%2C Best hit);ORF_evidence=A2YX44 (UniProt);InterPro=Domain of unknown function DUF630 (IPR006868);NIAS_FLcDNA=002-112-C08;Expression=AK064559;TENOR=Os08t0519700-01;KEGG=Os08t0519700-01
Chr08	irgsp1_rep	five_prime_UTR	25829944	25830912	.	+	.	Parent=Os08t0519700-01
Chr08	irgsp1_rep	five_prime_UTR	25831016	25831076	.	+	.	Parent=Os08t0519700-01
Chr08	irgsp1_rep	CDS	25831077	25831623	.	+	0	Parent=Os08t0519700-01
Chr08	irgsp1_rep	CDS	25834371	25834384	.	+	2	Parent=Os08t0519700-01
Chr08	irgsp1_rep	three_prime_UTR	25834385	25834691	.	+	.	Parent=Os08t0519700-01
Chr08	irgsp1_rep	mRNA	25830688	25832265	.	+	.	ID=Os08t0519700-02;Name=Os08t0519700-02;Locus_id=Os08g0519700;Note=Hypothetical conserved gene.;Transcript_evidence=AK110779 (DDBJ%2C Best hit);ORF_evidence=A2YX44 (UniProt);InterPro=Domain of unknown function DUF630 (IPR006868);NIAS_FLcDNA=002-171-B11;TENOR=Os08t0519700-02
Chr08	irgsp1_rep	five_prime_UTR	25830688	25830912	.	+	.	Parent=Os08t0519700-02
Chr08	irgsp1_rep	five_prime_UTR	25831016	25831076	.	+	.	Parent=Os08t0519700-02
Chr08	irgsp1_rep	CDS	25831077	25832265	.	+	0	Parent=Os08t0519700-02
Chr08	irgsp1_rep	mRNA	25833627	25834331	.	+	.	ID=Os08t0519750-00;Name=Os08t0519750-00;Locus_id=Os08g0519750;Note=Hypothetical conserved gene.;Transcript_evidence=EU950331 (DDBJ);ORF_evidence=A2YX44 (UniProt);InterPro=Domain of unknown function DUF632 (IPR006867);TENOR=Os08t0519750-00;KEGG=Os08t0519750-00
Chr08	irgsp1_rep	five_prime_UTR	25833627	25833638	.	+	.	Parent=Os08t0519750-00
Chr08	irgsp1_rep	CDS	25833639	25834331	.	+	0	Parent=Os08t0519750-00
Chr08	irgsp1_rep	mRNA	25836766	25844536	.	+	.	ID=Os08t0519800-01;Name=Os08t0519800-01;Locus_id=Os08g0519800;Note=Similar to Maternal pumilio protein. Splice isoform E.;Transcript_evidence=AK121539 (DDBJ%2C Best hit);ORF_evidence=Q6YZW8 (UniProt);GO=Molecular Function: RNA binding (GO:0003723),Molecular Function: binding (GO:0005488);InterPro=Pumilio RNA-binding repeat (IPR001313),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033031I02;Expression=AK121539;TENOR=Os08t0519800-01;KEGG=Os08t0519800-01
Chr08	irgsp1_rep	five_prime_UTR	25836766	25837145	.	+	.	Parent=Os08t0519800-01
Chr08	irgsp1_rep	five_prime_UTR	25837791	25837794	.	+	.	Parent=Os08t0519800-01
Chr08	irgsp1_rep	CDS	25837795	25838433	.	+	0	Parent=Os08t0519800-01
Chr08	irgsp1_rep	CDS	25839852	25841254	.	+	0	Parent=Os08t0519800-01
Chr08	irgsp1_rep	CDS	25841352	25841493	.	+	1	Parent=Os08t0519800-01
Chr08	irgsp1_rep	CDS	25841657	25841764	.	+	0	Parent=Os08t0519800-01
Chr08	irgsp1_rep	CDS	25842588	25842800	.	+	0	Parent=Os08t0519800-01
Chr08	irgsp1_rep	CDS	25842885	25842995	.	+	0	Parent=Os08t0519800-01
Chr08	irgsp1_rep	CDS	25843341	25843535	.	+	0	Parent=Os08t0519800-01
Chr08	irgsp1_rep	CDS	25843797	25843968	.	+	0	Parent=Os08t0519800-01
Chr08	irgsp1_rep	CDS	25844077	25844099	.	+	2	Parent=Os08t0519800-01
Chr08	irgsp1_rep	three_prime_UTR	25844100	25844536	.	+	.	Parent=Os08t0519800-01
Chr08	irgsp1_rep	mRNA	25836907	25844420	.	+	.	ID=Os08t0519800-02;Name=Os08t0519800-02;Locus_id=Os08g0519800;Note=Pumilio RNA-binding repeat domain containing protein.;Transcript_evidence=AK064999 (DDBJ%2C Best hit);ORF_evidence=B9G1U3 (UniProt);GO=Molecular Function: RNA binding (GO:0003723),Molecular Function: binding (GO:0005488);InterPro=Pumilio RNA-binding repeat (IPR001313),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013001E01;TENOR=Os08t0519800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	25836907	25837145	.	+	.	Parent=Os08t0519800-02
Chr08	irgsp1_rep	five_prime_UTR	25837791	25837794	.	+	.	Parent=Os08t0519800-02
Chr08	irgsp1_rep	CDS	25837795	25838433	.	+	0	Parent=Os08t0519800-02
Chr08	irgsp1_rep	CDS	25839837	25841254	.	+	0	Parent=Os08t0519800-02
Chr08	irgsp1_rep	CDS	25841352	25841493	.	+	1	Parent=Os08t0519800-02
Chr08	irgsp1_rep	CDS	25841657	25841764	.	+	0	Parent=Os08t0519800-02
Chr08	irgsp1_rep	CDS	25842588	25842800	.	+	0	Parent=Os08t0519800-02
Chr08	irgsp1_rep	CDS	25842885	25842995	.	+	0	Parent=Os08t0519800-02
Chr08	irgsp1_rep	CDS	25843341	25843535	.	+	0	Parent=Os08t0519800-02
Chr08	irgsp1_rep	CDS	25843797	25843968	.	+	0	Parent=Os08t0519800-02
Chr08	irgsp1_rep	CDS	25844077	25844099	.	+	2	Parent=Os08t0519800-02
Chr08	irgsp1_rep	three_prime_UTR	25844100	25844420	.	+	.	Parent=Os08t0519800-02
Chr08	irgsp1_rep	mRNA	25847203	25847991	.	-	.	ID=Os08t0519900-00;Name=Os08t0519900-00;Locus_id=Os08g0519900;CGSNL Gene Symbol=EXO70I1;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN I1;Oryzabase Gene Symbol Synonym(s)=OsEXO70I1%2C OsExo70I1%2C OrysaI1_Exo70;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein I1;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001062263.1 (RefSeq);Oryzabase=20342;TENOR=Os08t0519900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	25847203	25847991	.	-	0	Parent=Os08t0519900-00
Chr08	irgsp1_rep	mRNA	25848686	25852963	.	-	.	ID=Os08t0520000-01;Name=Os08t0520000-01;Locus_id=Os08g0520000;Oryzabase Gene Symbol Synonym(s)=BTI-1;Note=Mitochondrial substrate carrier family protein.;Transcript_evidence=AK063556 (DDBJ%2C Best hit);ORF_evidence=NP_001151333.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial inner membrane (GO:0005743),Molecular Function: binding (GO:0005488);InterPro=Mitochondrial carrier protein (IPR002067),Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=001-117-E10;Oryzabase=13328;Expression=AK063556;TENOR=Os08t0520000-01;KEGG=Os08t0520000-01
Chr08	irgsp1_rep	five_prime_UTR	25852943	25852963	.	-	.	Parent=Os08t0520000-01
Chr08	irgsp1_rep	CDS	25852703	25852942	.	-	0	Parent=Os08t0520000-01
Chr08	irgsp1_rep	CDS	25850740	25850834	.	-	0	Parent=Os08t0520000-01
Chr08	irgsp1_rep	CDS	25849927	25850260	.	-	1	Parent=Os08t0520000-01
Chr08	irgsp1_rep	CDS	25849423	25849660	.	-	0	Parent=Os08t0520000-01
Chr08	irgsp1_rep	CDS	25849009	25849259	.	-	2	Parent=Os08t0520000-01
Chr08	irgsp1_rep	three_prime_UTR	25848686	25849008	.	-	.	Parent=Os08t0520000-01
Chr08	irgsp1_rep	mRNA	25853729	25857131	.	+	.	ID=Os08t0520100-01;Name=Os08t0520100-01;Locus_id=Os08g0520100;Note=Pseudouridine synthase domain containing protein.;Transcript_evidence=AK120052 (DDBJ%2C Best hit);ORF_evidence=NP_178012.2 (RefSeq);GO=Biological Process: pseudouridine synthesis (GO:0001522),Biological Process: RNA modification (GO:0009451),Molecular Function: RNA binding (GO:0003723),Molecular Function: pseudouridine synthase activity (GO:0009982);InterPro=Pseudouridine synthase%2C RsuA and RluB/C/D/E/F (IPR006145),Pseudouridine synthase%2C catalytic domain (IPR020103);NIAS_FLcDNA=J013000I20;Expression=AK120052;TENOR=Os08t0520100-01;KEGG=Os08t0520100-01
Chr08	irgsp1_rep	five_prime_UTR	25853729	25853798	.	+	.	Parent=Os08t0520100-01
Chr08	irgsp1_rep	CDS	25853799	25854113	.	+	0	Parent=Os08t0520100-01
Chr08	irgsp1_rep	CDS	25854520	25854591	.	+	0	Parent=Os08t0520100-01
Chr08	irgsp1_rep	CDS	25854683	25854841	.	+	0	Parent=Os08t0520100-01
Chr08	irgsp1_rep	CDS	25855213	25855341	.	+	0	Parent=Os08t0520100-01
Chr08	irgsp1_rep	CDS	25855436	25855552	.	+	0	Parent=Os08t0520100-01
Chr08	irgsp1_rep	CDS	25855676	25855777	.	+	0	Parent=Os08t0520100-01
Chr08	irgsp1_rep	CDS	25856001	25856159	.	+	0	Parent=Os08t0520100-01
Chr08	irgsp1_rep	CDS	25856332	25856706	.	+	0	Parent=Os08t0520100-01
Chr08	irgsp1_rep	three_prime_UTR	25856707	25857131	.	+	.	Parent=Os08t0520100-01
Chr08	irgsp1_rep	mRNA	25854563	25857132	.	+	.	ID=Os08t0520100-02;Name=Os08t0520100-02;Locus_id=Os08g0520100;Note=Similar to pseudouridine synthase family protein.;Transcript_evidence=AK059686 (DDBJ%2C Best hit);ORF_evidence=NP_178012.2 (RefSeq);GO=Biological Process: pseudouridine synthesis (GO:0001522),Biological Process: RNA modification (GO:0009451),Molecular Function: RNA binding (GO:0003723),Molecular Function: pseudouridine synthase activity (GO:0009982);InterPro=Pseudouridine synthase%2C RsuA and RluB/C/D/E/F (IPR006145),Pseudouridine synthase%2C catalytic domain (IPR020103);NIAS_FLcDNA=001-032-A07;Expression=AK059686;TENOR=Os08t0520100-02;KEGG=Os08t0520100-02
Chr08	irgsp1_rep	five_prime_UTR	25854563	25854564	.	+	.	Parent=Os08t0520100-02
Chr08	irgsp1_rep	CDS	25854565	25854591	.	+	0	Parent=Os08t0520100-02
Chr08	irgsp1_rep	CDS	25854683	25854841	.	+	0	Parent=Os08t0520100-02
Chr08	irgsp1_rep	CDS	25855213	25855341	.	+	0	Parent=Os08t0520100-02
Chr08	irgsp1_rep	CDS	25855436	25855552	.	+	0	Parent=Os08t0520100-02
Chr08	irgsp1_rep	CDS	25855676	25855777	.	+	0	Parent=Os08t0520100-02
Chr08	irgsp1_rep	CDS	25856001	25856159	.	+	0	Parent=Os08t0520100-02
Chr08	irgsp1_rep	CDS	25856332	25856706	.	+	0	Parent=Os08t0520100-02
Chr08	irgsp1_rep	three_prime_UTR	25856707	25857132	.	+	.	Parent=Os08t0520100-02
Chr08	irgsp1_rep	mRNA	25856980	25858374	.	-	.	ID=Os08t0520200-01;Name=Os08t0520200-01;Locus_id=Os08g0520200;Note=Similar to predicted protein.;Transcript_evidence=AK288100 (DDBJ%2C Best hit);ORF_evidence=Q287W6 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J075194H23;TENOR=Os08t0520200-01;KEGG=Os08t0520200-01
Chr08	irgsp1_rep	five_prime_UTR	25858342	25858374	.	-	.	Parent=Os08t0520200-01
Chr08	irgsp1_rep	CDS	25857160	25858341	.	-	0	Parent=Os08t0520200-01
Chr08	irgsp1_rep	three_prime_UTR	25856980	25857159	.	-	.	Parent=Os08t0520200-01
Chr08	irgsp1_rep	mRNA	25859053	25864844	.	-	.	ID=Os08t0520300-01;Name=Os08t0520300-01;Locus_id=Os08g0520300;CGSNL Gene Symbol=RBP-208;CGSNL Gene Name=RNA-BINDING PROTEIN 208;Oryzabase Gene Symbol Synonym(s)=OsRBP-208;Oryzabase Gene Name Synonym(s)=RNA-Binding Protein 208;Note=Similar to Oligouridylate binding protein.;Transcript_evidence=AK069912 (DDBJ%2C Best hit);ORF_evidence=NP_001148487.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023037G11;Oryzabase=22650;Expression=AK069912;TENOR=Os08t0520300-01;KEGG=Os08t0520300-01
Chr08	irgsp1_rep	five_prime_UTR	25864617	25864844	.	-	.	Parent=Os08t0520300-01
Chr08	irgsp1_rep	CDS	25864455	25864616	.	-	0	Parent=Os08t0520300-01
Chr08	irgsp1_rep	CDS	25863388	25863449	.	-	0	Parent=Os08t0520300-01
Chr08	irgsp1_rep	CDS	25863008	25863110	.	-	1	Parent=Os08t0520300-01
Chr08	irgsp1_rep	CDS	25862269	25862345	.	-	0	Parent=Os08t0520300-01
Chr08	irgsp1_rep	CDS	25862113	25862174	.	-	1	Parent=Os08t0520300-01
Chr08	irgsp1_rep	CDS	25861931	25862018	.	-	2	Parent=Os08t0520300-01
Chr08	irgsp1_rep	CDS	25861600	25861676	.	-	1	Parent=Os08t0520300-01
Chr08	irgsp1_rep	CDS	25860933	25860962	.	-	2	Parent=Os08t0520300-01
Chr08	irgsp1_rep	CDS	25860707	25860829	.	-	2	Parent=Os08t0520300-01
Chr08	irgsp1_rep	CDS	25860091	25860182	.	-	2	Parent=Os08t0520300-01
Chr08	irgsp1_rep	CDS	25859737	25859910	.	-	0	Parent=Os08t0520300-01
Chr08	irgsp1_rep	CDS	25859355	25859648	.	-	0	Parent=Os08t0520300-01
Chr08	irgsp1_rep	three_prime_UTR	25859053	25859354	.	-	.	Parent=Os08t0520300-01
Chr08	irgsp1_rep	mRNA	25867086	25870277	.	-	.	ID=Os08t0520400-01;Name=Os08t0520400-01;Locus_id=Os08g0520400;Note=Conserved hypothetical protein.;Transcript_evidence=AK119371 (DDBJ%2C Best hit),AK064309 (DDBJ%2C Best hit),AK102428 (DDBJ%2C Best hit);ORF_evidence=A2YX50 (UniProt);NIAS_FLcDNA=001-131-H10,002-107-B11,J033093G21;Expression=AK119371;TENOR=Os08t0520400-01;KEGG=Os08t0520400-01
Chr08	irgsp1_rep	five_prime_UTR	25869998	25870277	.	-	.	Parent=Os08t0520400-01
Chr08	irgsp1_rep	CDS	25868597	25869997	.	-	0	Parent=Os08t0520400-01
Chr08	irgsp1_rep	three_prime_UTR	25867086	25868596	.	-	.	Parent=Os08t0520400-01
Chr08	irgsp1_rep	mRNA	25870837	25871444	.	-	.	ID=Os08t0520500-01;Name=Os08t0520500-01;Locus_id=Os08g0520500;CGSNL Gene Symbol=ARF7B;CGSNL Gene Name=AUXIN RESPONSE FACTOR 7B;Oryzabase Gene Symbol Synonym(s)=OsARF7b%2C OsARF21%2C DLN216%2C OsDLN216;Oryzabase Gene Name Synonym(s)=auxin response factor-7b%2C auxin response factor 7b%2C auxin response factor-21%2C auxin response factor 21%2C DLN repressor 216%2C DLN motif protein 216;Note=Similar to Isoform 2 of Auxin response factor 21.;Transcript_evidence=AK059543 (DDBJ%2C Best hit);ORF_evidence=Q6YZW0-2 (UniProt);NIAS_FLcDNA=001-029-F01;Oryzabase=10001;Expression=AK059543;TENOR=Os08t0520500-01;KEGG=Os08t0520500-01
Chr08	irgsp1_rep	five_prime_UTR	25871444	25871444	.	-	.	Parent=Os08t0520500-01
Chr08	irgsp1_rep	CDS	25871291	25871443	.	-	0	Parent=Os08t0520500-01
Chr08	irgsp1_rep	three_prime_UTR	25870837	25871290	.	-	.	Parent=Os08t0520500-01
Chr08	irgsp1_rep	mRNA	25873389	25877678	.	-	.	ID=Os08t0520550-01;Name=Os08t0520550-01;Locus_id=Os08g0520550;Note=Similar to Auxin response factor 21.;Transcript_evidence=AK111639 (DDBJ%2C Best hit);ORF_evidence=Q6YZW0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: response to hormone stimulus (GO:0009725),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),Auxin response factor (IPR010525),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=J013122A07;TENOR=Os08t0520550-01
Chr08	irgsp1_rep	five_prime_UTR	25877545	25877678	.	-	.	Parent=Os08t0520550-01
Chr08	irgsp1_rep	CDS	25877383	25877544	.	-	0	Parent=Os08t0520550-01
Chr08	irgsp1_rep	CDS	25876290	25876388	.	-	0	Parent=Os08t0520550-01
Chr08	irgsp1_rep	CDS	25876114	25876170	.	-	0	Parent=Os08t0520550-01
Chr08	irgsp1_rep	CDS	25875862	25876026	.	-	0	Parent=Os08t0520550-01
Chr08	irgsp1_rep	CDS	25875690	25875774	.	-	0	Parent=Os08t0520550-01
Chr08	irgsp1_rep	CDS	25875387	25875477	.	-	2	Parent=Os08t0520550-01
Chr08	irgsp1_rep	CDS	25875111	25875275	.	-	1	Parent=Os08t0520550-01
Chr08	irgsp1_rep	CDS	25874908	25875030	.	-	1	Parent=Os08t0520550-01
Chr08	irgsp1_rep	CDS	25874501	25874576	.	-	1	Parent=Os08t0520550-01
Chr08	irgsp1_rep	CDS	25874294	25874432	.	-	0	Parent=Os08t0520550-01
Chr08	irgsp1_rep	CDS	25873389	25874138	.	-	2	Parent=Os08t0520550-01
Chr08	irgsp1_rep	mRNA	25888333	25889040	.	-	.	ID=Os08t0520600-00;Name=Os08t0520600-00;Locus_id=Os08g0520600;Note=Conserved hypothetical protein.;Transcript_evidence=EU945787 (DDBJ);ORF_evidence=NP_001062269.1 (RefSeq);TENOR=Os08t0520600-00;KEGG=Os08t0520600-00
Chr08	irgsp1_rep	CDS	25888333	25889040	.	-	0	Parent=Os08t0520600-00
Chr08	irgsp1_rep	mRNA	25889494	25891094	.	+	.	ID=Os08t0520700-01;Name=Os08t0520700-01;Locus_id=Os08g0520700;Note=Hypothetical protein.;Transcript_evidence=AK060548 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-021-H04;Expression=AK060548;TENOR=Os08t0520700-01;KEGG=Os08t0520700-01
Chr08	irgsp1_rep	five_prime_UTR	25889494	25890144	.	+	.	Parent=Os08t0520700-01
Chr08	irgsp1_rep	CDS	25890145	25890462	.	+	0	Parent=Os08t0520700-01
Chr08	irgsp1_rep	three_prime_UTR	25890463	25891094	.	+	.	Parent=Os08t0520700-01
Chr08	irgsp1_rep	mRNA	25890163	25892199	.	+	.	ID=Os08t0520700-02;Name=Os08t0520700-02;Locus_id=Os08g0520700;Note=Hypothetical protein.;Transcript_evidence=AK060618 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-026-C02;TENOR=Os08t0520700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	25890163	25890164	.	+	.	Parent=Os08t0520700-02
Chr08	irgsp1_rep	CDS	25890165	25890731	.	+	0	Parent=Os08t0520700-02
Chr08	irgsp1_rep	three_prime_UTR	25890732	25892199	.	+	.	Parent=Os08t0520700-02
Chr08	irgsp1_rep	mRNA	25891814	25892380	.	+	.	ID=Os08t0520700-03;Name=Os08t0520700-03;Locus_id=Os08g0520700;Note=Non-protein coding transcript.;Transcript_evidence=AK122042 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J033113J08;TENOR=Os08t0520700-03
Chr08	irgsp1_rep	exon	25891814	25892380	.	+	.	Parent=Os08t0520700-03
Chr08	irgsp1_rep	mRNA	25892907	25893251	.	+	.	ID=Os08t0520850-00;Name=Os08t0520850-00;Locus_id=Os08g0520850;Note=Similar to chaperone protein dnaJ-related.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_850052.1 (RefSeq);TENOR=Os08t0520850-00;KEGG=Os08t0520850-00
Chr08	irgsp1_rep	CDS	25892907	25893251	.	+	0	Parent=Os08t0520850-00
Chr08	irgsp1_rep	mRNA	25893657	25900576	.	-	.	ID=Os08t0520900-01;Name=Os08t0520900-01;Locus_id=Os08g0520900;RAP-DB Gene Symbol Synonym(s)=OsPHS8%2C PHS8%2C ISA1%2C OsISA1;RAP-DB Gene Name Synonym(s)=pre-harvest sprouting 8%2C isoamylase1;CGSNL Gene Symbol=ISA1;CGSNL Gene Name=ISOAMYLASE 1;Oryzabase Gene Symbol Synonym(s)=OsISA1%2C ISA%2C OsISA%2C PHS8%2C PHS8/ISA1%2C ISA I%2C OsISA I;Oryzabase Gene Name Synonym(s)=isoamylase 1%2C isoamylase1%2C sugary-1%2C pre-harvest sprouting 8;Note=Starch-debranching enzyme%2C Isoamylase 1%2C Amylopectin biosynthesis%2C Starch biosynthesis;Transcript_evidence=AB015615 (Fujihikari truncated),Inferred from literature;ORF_evidence=D0TZF0;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Immunoglobulin-like fold (IPR013783),Immunoglobulin E-set (IPR014756),Glycoside hydrolase superfamily (IPR017853),Glycosyl hydrolase%2C all-beta (IPR013780),Glycoside hydrolase%2C family 13%2C N-terminal (IPR004193),Glycosyl hydrolase%2C family 13%2C catalytic domain (IPR006047);Manual Curation=July 13%2C 2018;Literature_PMID=29775500,28730411,21436381,12834068,10333591;Oryzabase=7056;Expression=AB015615;TENOR=Os08t0520900-00;KEGG=Os08t0520900-00 (EC:3.2.1.68)
Chr08	irgsp1_rep	CDS	25900166	25900576	.	-	0	Parent=Os08t0520900-01
Chr08	irgsp1_rep	CDS	25899850	25900032	.	-	0	Parent=Os08t0520900-01
Chr08	irgsp1_rep	CDS	25899653	25899745	.	-	0	Parent=Os08t0520900-01
Chr08	irgsp1_rep	CDS	25899144	25899296	.	-	0	Parent=Os08t0520900-01
Chr08	irgsp1_rep	CDS	25898674	25898750	.	-	0	Parent=Os08t0520900-01
Chr08	irgsp1_rep	CDS	25897951	25898092	.	-	1	Parent=Os08t0520900-01
Chr08	irgsp1_rep	CDS	25897761	25897868	.	-	0	Parent=Os08t0520900-01
Chr08	irgsp1_rep	CDS	25897561	25897646	.	-	0	Parent=Os08t0520900-01
Chr08	irgsp1_rep	CDS	25897091	25897162	.	-	1	Parent=Os08t0520900-01
Chr08	irgsp1_rep	CDS	25896876	25897002	.	-	1	Parent=Os08t0520900-01
Chr08	irgsp1_rep	CDS	25896436	25896522	.	-	0	Parent=Os08t0520900-01
Chr08	irgsp1_rep	CDS	25895902	25895994	.	-	0	Parent=Os08t0520900-01
Chr08	irgsp1_rep	CDS	25895255	25895413	.	-	0	Parent=Os08t0520900-01
Chr08	irgsp1_rep	CDS	25894735	25894818	.	-	0	Parent=Os08t0520900-01
Chr08	irgsp1_rep	CDS	25894500	25894580	.	-	0	Parent=Os08t0520900-01
Chr08	irgsp1_rep	CDS	25894340	25894419	.	-	0	Parent=Os08t0520900-01
Chr08	irgsp1_rep	CDS	25894129	25894246	.	-	1	Parent=Os08t0520900-01
Chr08	irgsp1_rep	CDS	25893751	25894008	.	-	0	Parent=Os08t0520900-01
Chr08	irgsp1_rep	three_prime_UTR	25893657	25893750	.	-	.	Parent=Os08t0520900-01
Chr08	irgsp1_rep	mRNA	25909390	25910662	.	+	.	ID=Os08t0521000-01;Name=Os08t0521000-01;Locus_id=Os08g0521000;Note=Protein of unknown function DUF599 family protein.;Transcript_evidence=AK108985 (DDBJ%2C Best hit);ORF_evidence=A2YX57 (UniProt);InterPro=Protein of unknown function DUF599 (IPR006747);NIAS_FLcDNA=002-153-F05;Expression=AK108985;TENOR=Os08t0521000-01;KEGG=Os08t0521000-01
Chr08	irgsp1_rep	five_prime_UTR	25909390	25909505	.	+	.	Parent=Os08t0521000-01
Chr08	irgsp1_rep	CDS	25909506	25909673	.	+	0	Parent=Os08t0521000-01
Chr08	irgsp1_rep	CDS	25909748	25910332	.	+	0	Parent=Os08t0521000-01
Chr08	irgsp1_rep	three_prime_UTR	25910333	25910662	.	+	.	Parent=Os08t0521000-01
Chr08	irgsp1_rep	mRNA	25930879	25934033	.	-	.	ID=Os08t0521200-01;Name=Os08t0521200-01;Locus_id=Os08g0521200;CGSNL Gene Symbol=RLCK258;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 258;Oryzabase Gene Symbol Synonym(s)=OsRLCK258;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 258;Note=Similar to Receptor-like protein kinase 1.;Transcript_evidence=AK121158 (DDBJ%2C Best hit);ORF_evidence=Q9AUC2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023079L12;Oryzabase=18948;Expression=AK121158;TENOR=Os08t0521200-01;KEGG=Os08t0521200-01
Chr08	irgsp1_rep	five_prime_UTR	25933873	25934033	.	-	.	Parent=Os08t0521200-01
Chr08	irgsp1_rep	CDS	25932390	25933872	.	-	0	Parent=Os08t0521200-01
Chr08	irgsp1_rep	CDS	25931158	25931828	.	-	2	Parent=Os08t0521200-01
Chr08	irgsp1_rep	three_prime_UTR	25930879	25931157	.	-	.	Parent=Os08t0521200-01
Chr08	irgsp1_rep	mRNA	25937086	25940717	.	+	.	ID=Os08t0521400-01;Name=Os08t0521400-01;Locus_id=Os08g0521400;Note=Similar to Zn-finger%2C RanBP-type%2C containing protein.;Transcript_evidence=AK070148 (DDBJ%2C Best hit);ORF_evidence=NP_001146916.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RanBP2-type (IPR001876);NIAS_FLcDNA=J023041G22;Expression=AK070148;TENOR=Os08t0521400-01;KEGG=Os08t0521400-01
Chr08	irgsp1_rep	five_prime_UTR	25937086	25937297	.	+	.	Parent=Os08t0521400-01
Chr08	irgsp1_rep	CDS	25937298	25937309	.	+	0	Parent=Os08t0521400-01
Chr08	irgsp1_rep	CDS	25937531	25937576	.	+	0	Parent=Os08t0521400-01
Chr08	irgsp1_rep	CDS	25937676	25937788	.	+	2	Parent=Os08t0521400-01
Chr08	irgsp1_rep	CDS	25937887	25938172	.	+	0	Parent=Os08t0521400-01
Chr08	irgsp1_rep	CDS	25938599	25938663	.	+	2	Parent=Os08t0521400-01
Chr08	irgsp1_rep	CDS	25938884	25938935	.	+	0	Parent=Os08t0521400-01
Chr08	irgsp1_rep	CDS	25939016	25939125	.	+	2	Parent=Os08t0521400-01
Chr08	irgsp1_rep	CDS	25939853	25939883	.	+	0	Parent=Os08t0521400-01
Chr08	irgsp1_rep	CDS	25940095	25940246	.	+	2	Parent=Os08t0521400-01
Chr08	irgsp1_rep	CDS	25940415	25940417	.	+	0	Parent=Os08t0521400-01
Chr08	irgsp1_rep	three_prime_UTR	25940418	25940717	.	+	.	Parent=Os08t0521400-01
Chr08	irgsp1_rep	mRNA	25937086	25942289	.	+	.	ID=Os08t0521400-02;Name=Os08t0521400-02;Locus_id=Os08g0521400;Note=Similar to Zn-finger%2C RanBP-type%2C containing protein.;Transcript_evidence=AK105045 (DDBJ%2C Best hit);ORF_evidence=B6TZ64 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RanBP2-type (IPR001876);NIAS_FLcDNA=001-038-H09;Expression=AK105045;TENOR=Os08t0521400-02;KEGG=Os08t0521400-02
Chr08	irgsp1_rep	five_prime_UTR	25937086	25937297	.	+	.	Parent=Os08t0521400-02
Chr08	irgsp1_rep	CDS	25937298	25937309	.	+	0	Parent=Os08t0521400-02
Chr08	irgsp1_rep	CDS	25937531	25937576	.	+	0	Parent=Os08t0521400-02
Chr08	irgsp1_rep	CDS	25937676	25937788	.	+	2	Parent=Os08t0521400-02
Chr08	irgsp1_rep	CDS	25937890	25938172	.	+	0	Parent=Os08t0521400-02
Chr08	irgsp1_rep	CDS	25938599	25938663	.	+	2	Parent=Os08t0521400-02
Chr08	irgsp1_rep	CDS	25938884	25938935	.	+	0	Parent=Os08t0521400-02
Chr08	irgsp1_rep	CDS	25939016	25939125	.	+	2	Parent=Os08t0521400-02
Chr08	irgsp1_rep	CDS	25939853	25939883	.	+	0	Parent=Os08t0521400-02
Chr08	irgsp1_rep	CDS	25940095	25940246	.	+	2	Parent=Os08t0521400-02
Chr08	irgsp1_rep	CDS	25941663	25941839	.	+	0	Parent=Os08t0521400-02
Chr08	irgsp1_rep	three_prime_UTR	25941840	25942289	.	+	.	Parent=Os08t0521400-02
Chr08	irgsp1_rep	mRNA	25937097	25942445	.	+	.	ID=Os08t0521400-03;Name=Os08t0521400-03;Locus_id=Os08g0521400;Note=Zinc finger%2C RanBP2-type domain containing protein.;Transcript_evidence=AK101704 (DDBJ%2C Best hit);ORF_evidence=B6TZ64 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RanBP2-type (IPR001876);NIAS_FLcDNA=J033060G13;Expression=AK101704;TENOR=Os08t0521400-03;KEGG=Os08t0521400-03
Chr08	irgsp1_rep	five_prime_UTR	25937097	25937297	.	+	.	Parent=Os08t0521400-03
Chr08	irgsp1_rep	CDS	25937298	25937309	.	+	0	Parent=Os08t0521400-03
Chr08	irgsp1_rep	CDS	25937531	25937576	.	+	0	Parent=Os08t0521400-03
Chr08	irgsp1_rep	CDS	25937676	25937788	.	+	2	Parent=Os08t0521400-03
Chr08	irgsp1_rep	CDS	25937887	25938172	.	+	0	Parent=Os08t0521400-03
Chr08	irgsp1_rep	CDS	25938599	25938663	.	+	2	Parent=Os08t0521400-03
Chr08	irgsp1_rep	CDS	25938884	25938935	.	+	0	Parent=Os08t0521400-03
Chr08	irgsp1_rep	CDS	25939016	25939125	.	+	2	Parent=Os08t0521400-03
Chr08	irgsp1_rep	CDS	25939853	25939883	.	+	0	Parent=Os08t0521400-03
Chr08	irgsp1_rep	CDS	25940095	25940246	.	+	2	Parent=Os08t0521400-03
Chr08	irgsp1_rep	CDS	25941663	25941839	.	+	0	Parent=Os08t0521400-03
Chr08	irgsp1_rep	three_prime_UTR	25941840	25942445	.	+	.	Parent=Os08t0521400-03
Chr08	irgsp1_rep	mRNA	25950258	25951157	.	+	.	ID=Os08t0521600-01;Name=Os08t0521600-01;Locus_id=Os08g0521600;CGSNL Gene Symbol=ERF115;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 115;Oryzabase Gene Symbol Synonym(s)=OsERF#115%2C OsERF115%2C AP2/EREBP#110%2C AP2/EREBP110%2C OsEnS-123;Oryzabase Gene Name Synonym(s)=ethylene response factor 115%2C APETALA2/ethylene-responsive element binding protein 110%2C endosperm-specific gene 123;Note=Similar to Dehydration responsive element binding protein 2C (DREB2C protein).;Transcript_evidence=AK108208 (DDBJ%2C Best hit);ORF_evidence=A2YX62 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=002-140-D07;Oryzabase=10611;Expression=AK108208;TENOR=Os08t0521600-01;KEGG=Os08t0521600-01
Chr08	irgsp1_rep	five_prime_UTR	25950258	25950315	.	+	.	Parent=Os08t0521600-01
Chr08	irgsp1_rep	CDS	25950316	25950885	.	+	0	Parent=Os08t0521600-01
Chr08	irgsp1_rep	three_prime_UTR	25950886	25951157	.	+	.	Parent=Os08t0521600-01
Chr08	irgsp1_rep	mRNA	25952489	25952561	.	+	.	ID=Os08t0521701-00;Name=Os08t0521701-00;Locus_id=Os08g0521701;Note=Non-protein coding transcript.;Transcript_evidence=X06284 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0521701-00
Chr08	irgsp1_rep	exon	25952489	25952561	.	+	.	Parent=Os08t0521701-00
Chr08	irgsp1_rep	mRNA	25952959	25954768	.	-	.	ID=Os08t0521800-01;Name=Os08t0521800-01;Locus_id=Os08g0521800;Note=Protein of unknown function DUF1997 domain containing protein.;Transcript_evidence=AK067267 (DDBJ%2C Best hit);ORF_evidence=A2YX63 (UniProt);InterPro=Protein of unknown function DUF1997 (IPR018971);NIAS_FLcDNA=J013098C23;Expression=AK067267;TENOR=Os08t0521800-01;KEGG=Os08t0521800-01
Chr08	irgsp1_rep	five_prime_UTR	25954648	25954768	.	-	.	Parent=Os08t0521800-01
Chr08	irgsp1_rep	CDS	25954195	25954647	.	-	0	Parent=Os08t0521800-01
Chr08	irgsp1_rep	CDS	25954042	25954087	.	-	0	Parent=Os08t0521800-01
Chr08	irgsp1_rep	CDS	25953700	25953785	.	-	2	Parent=Os08t0521800-01
Chr08	irgsp1_rep	CDS	25953499	25953557	.	-	0	Parent=Os08t0521800-01
Chr08	irgsp1_rep	CDS	25953130	25953268	.	-	1	Parent=Os08t0521800-01
Chr08	irgsp1_rep	three_prime_UTR	25952959	25953129	.	-	.	Parent=Os08t0521800-01
Chr08	irgsp1_rep	mRNA	25952986	25954735	.	-	.	ID=Os08t0521800-02;Name=Os08t0521800-02;Locus_id=Os08g0521800;Note=Protein of unknown function DUF1997 domain containing protein.;Transcript_evidence=AK104809 (DDBJ%2C Best hit);ORF_evidence=A2YX63 (UniProt);InterPro=Protein of unknown function DUF1997 (IPR018971);NIAS_FLcDNA=001-040-E10;Expression=AK104809;TENOR=Os08t0521800-02;KEGG=Os08t0521800-02
Chr08	irgsp1_rep	five_prime_UTR	25954648	25954735	.	-	.	Parent=Os08t0521800-02
Chr08	irgsp1_rep	CDS	25954195	25954647	.	-	0	Parent=Os08t0521800-02
Chr08	irgsp1_rep	CDS	25954042	25954087	.	-	0	Parent=Os08t0521800-02
Chr08	irgsp1_rep	CDS	25953700	25953785	.	-	2	Parent=Os08t0521800-02
Chr08	irgsp1_rep	CDS	25953499	25953557	.	-	0	Parent=Os08t0521800-02
Chr08	irgsp1_rep	CDS	25953130	25953268	.	-	1	Parent=Os08t0521800-02
Chr08	irgsp1_rep	three_prime_UTR	25952986	25953129	.	-	.	Parent=Os08t0521800-02
Chr08	irgsp1_rep	mRNA	25958921	25960351	.	-	.	ID=Os08t0522100-00;Name=Os08t0522100-00;Locus_id=Os08g0522100;Note=Hypothetical conserved gene.;Transcript_evidence=CT836139 (DDBJ%2C Secondary hit);ORF_evidence=A3BUY6 (UniProt);TENOR=Os08t0522100-00;KEGG=Os08t0522100-00
Chr08	irgsp1_rep	five_prime_UTR	25960350	25960351	.	-	.	Parent=Os08t0522100-00
Chr08	irgsp1_rep	CDS	25960279	25960349	.	-	0	Parent=Os08t0522100-00
Chr08	irgsp1_rep	CDS	25960070	25960201	.	-	1	Parent=Os08t0522100-00
Chr08	irgsp1_rep	CDS	25959868	25959952	.	-	1	Parent=Os08t0522100-00
Chr08	irgsp1_rep	CDS	25959217	25959225	.	-	0	Parent=Os08t0522100-00
Chr08	irgsp1_rep	three_prime_UTR	25958921	25959216	.	-	.	Parent=Os08t0522100-00
Chr08	irgsp1_rep	mRNA	25970924	25971521	.	+	.	ID=Os08t0522300-01;Name=Os08t0522300-01;Locus_id=Os08g0522300;Note=Conserved hypothetical protein.;Transcript_evidence=AK111038 (DDBJ%2C Best hit);ORF_evidence=A2YX66 (UniProt);NIAS_FLcDNA=002-175-A10;Expression=AK111038;TENOR=Os08t0522300-01;KEGG=Os08t0522300-01
Chr08	irgsp1_rep	five_prime_UTR	25970924	25971058	.	+	.	Parent=Os08t0522300-01
Chr08	irgsp1_rep	CDS	25971059	25971289	.	+	0	Parent=Os08t0522300-01
Chr08	irgsp1_rep	three_prime_UTR	25971290	25971521	.	+	.	Parent=Os08t0522300-01
Chr08	irgsp1_rep	mRNA	25971764	25974872	.	-	.	ID=Os08t0522400-01;Name=Os08t0522400-01;Locus_id=Os08g0522400;Note=Similar to APX6%3B L-ascorbate peroxidase/ heme binding / peroxidase.;Transcript_evidence=AK065893 (DDBJ%2C Best hit);ORF_evidence=NP_194958.2 (RefSeq);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Plant ascorbate peroxidase (IPR002207),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J013043E20;TENOR=Os08t0522400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	25974808	25974872	.	-	0	Parent=Os08t0522400-01
Chr08	irgsp1_rep	CDS	25974599	25974714	.	-	1	Parent=Os08t0522400-01
Chr08	irgsp1_rep	CDS	25974410	25974500	.	-	2	Parent=Os08t0522400-01
Chr08	irgsp1_rep	CDS	25973993	25974120	.	-	1	Parent=Os08t0522400-01
Chr08	irgsp1_rep	CDS	25973732	25973802	.	-	2	Parent=Os08t0522400-01
Chr08	irgsp1_rep	CDS	25973572	25973614	.	-	0	Parent=Os08t0522400-01
Chr08	irgsp1_rep	CDS	25973380	25973476	.	-	2	Parent=Os08t0522400-01
Chr08	irgsp1_rep	CDS	25973110	25973193	.	-	1	Parent=Os08t0522400-01
Chr08	irgsp1_rep	CDS	25972782	25972903	.	-	1	Parent=Os08t0522400-01
Chr08	irgsp1_rep	CDS	25972539	25972605	.	-	2	Parent=Os08t0522400-01
Chr08	irgsp1_rep	CDS	25972179	25972281	.	-	1	Parent=Os08t0522400-01
Chr08	irgsp1_rep	three_prime_UTR	25971764	25972178	.	-	.	Parent=Os08t0522400-01
Chr08	irgsp1_rep	mRNA	25975501	25977441	.	-	.	ID=Os08t0522500-01;Name=Os08t0522500-01;Locus_id=Os08g0522500;Note=Glycoside hydrolase%2C family 19 protein.;Transcript_evidence=AK106190 (DDBJ%2C Best hit),AK060080 (DDBJ%2C Best hit),AK102814 (DDBJ%2C Best hit),AK104718 (DDBJ%2C Best hit);ORF_evidence=B4G1H3 (UniProt);NIAS_FLcDNA=001-208-E01,006-306-D01,J033108M05,001-038-A09;TENOR=Os08t0522500-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	25977361	25977441	.	-	.	Parent=Os08t0522500-01
Chr08	irgsp1_rep	CDS	25976973	25977360	.	-	0	Parent=Os08t0522500-01
Chr08	irgsp1_rep	CDS	25976242	25976398	.	-	2	Parent=Os08t0522500-01
Chr08	irgsp1_rep	CDS	25975741	25976146	.	-	1	Parent=Os08t0522500-01
Chr08	irgsp1_rep	three_prime_UTR	25975501	25975740	.	-	.	Parent=Os08t0522500-01
Chr08	irgsp1_rep	mRNA	25979471	25983919	.	+	.	ID=Os08t0522600-01;Name=Os08t0522600-01;Locus_id=Os08g0522600;Oryzabase Gene Symbol Synonym(s)=OsDjC65;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C65;Note=Similar to Chaperone protein dnaJ 10 (AtJ10) (AtDjC10).;Transcript_evidence=AK105364 (DDBJ%2C Best hit);ORF_evidence=NP_001149115.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=001-119-E12;Oryzabase=12222;Expression=AK105364;TENOR=Os08t0522600-01;KEGG=Os08t0522600-01
Chr08	irgsp1_rep	five_prime_UTR	25979471	25979737	.	+	.	Parent=Os08t0522600-01
Chr08	irgsp1_rep	CDS	25979738	25979824	.	+	0	Parent=Os08t0522600-01
Chr08	irgsp1_rep	CDS	25979906	25979965	.	+	0	Parent=Os08t0522600-01
Chr08	irgsp1_rep	CDS	25981028	25981110	.	+	0	Parent=Os08t0522600-01
Chr08	irgsp1_rep	CDS	25981362	25981518	.	+	1	Parent=Os08t0522600-01
Chr08	irgsp1_rep	CDS	25981691	25981823	.	+	0	Parent=Os08t0522600-01
Chr08	irgsp1_rep	CDS	25982436	25982594	.	+	2	Parent=Os08t0522600-01
Chr08	irgsp1_rep	CDS	25982708	25982886	.	+	2	Parent=Os08t0522600-01
Chr08	irgsp1_rep	CDS	25982980	25983060	.	+	0	Parent=Os08t0522600-01
Chr08	irgsp1_rep	CDS	25983145	25983288	.	+	0	Parent=Os08t0522600-01
Chr08	irgsp1_rep	CDS	25983488	25983589	.	+	0	Parent=Os08t0522600-01
Chr08	irgsp1_rep	three_prime_UTR	25983590	25983919	.	+	.	Parent=Os08t0522600-01
Chr08	irgsp1_rep	mRNA	25984217	25985279	.	-	.	ID=Os08t0522700-00;Name=Os08t0522700-00;Locus_id=Os08g0522700;Note=BTB/POZ-like domain containing protein.;Transcript_evidence=AK356620 (DDBJ);ORF_evidence=Q7F1J7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069);TENOR=Os08t0522700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	25984254	25985279	.	-	0	Parent=Os08t0522700-00
Chr08	irgsp1_rep	three_prime_UTR	25984217	25984253	.	-	.	Parent=Os08t0522700-00
Chr08	irgsp1_rep	mRNA	25997620	25998699	.	-	.	ID=Os08t0523000-00;Name=Os08t0523000-00;Locus_id=Os08g0523000;Note=Similar to MAB1.;Transcript_evidence=EU974550 (DDBJ);ORF_evidence=Q7F1J5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069);TENOR=Os08t0523000-00;KEGG=Os08t0523000-00
Chr08	irgsp1_rep	CDS	25997620	25998699	.	-	0	Parent=Os08t0523000-00
Chr08	irgsp1_rep	mRNA	26013703	26014560	.	-	.	ID=Os08t0523100-00;Name=Os08t0523100-00;Locus_id=Os08g0523100;Note=BTB/POZ-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G1V0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);TENOR=Os08t0523100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	26013703	26014560	.	-	0	Parent=Os08t0523100-00
Chr08	irgsp1_rep	mRNA	26015347	26016312	.	-	.	ID=Os08t0523200-00;Name=Os08t0523200-00;Locus_id=Os08g0523200;Note=Similar to MAB1.;Transcript_evidence=AK249073 (DDBJ);ORF_evidence=Q7F1J2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);TENOR=Os08t0523200-00;KEGG=Os08t0523200-00
Chr08	irgsp1_rep	CDS	26015347	26016312	.	-	0	Parent=Os08t0523200-00
Chr08	irgsp1_rep	mRNA	26020204	26021349	.	-	.	ID=Os08t0523400-00;Name=Os08t0523400-00;Locus_id=Os08g0523400;Note=Similar to MAB1.;Transcript_evidence=AK249073 (DDBJ);ORF_evidence=B0ZC06 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);TENOR=Os08t0523400-00;KEGG=Os08t0523400-00
Chr08	irgsp1_rep	CDS	26020264	26021349	.	-	0	Parent=Os08t0523400-00
Chr08	irgsp1_rep	three_prime_UTR	26020204	26020263	.	-	.	Parent=Os08t0523400-00
Chr08	irgsp1_rep	mRNA	26026011	26028884	.	+	.	ID=Os08t0523600-01;Name=Os08t0523600-01;Locus_id=Os08g0523600;Oryzabase Gene Symbol Synonym(s)=OsKIX_9;Oryzabase Gene Name Synonym(s)=KIX domain protein 9;Note=Similar to CTV.22.;Transcript_evidence=AK063901 (DDBJ%2C Best hit);ORF_evidence=Q8H6Q8 (UniProt);NIAS_FLcDNA=001-122-H05;Oryzabase=13463;Expression=AK063901;TENOR=Os08t0523600-01;KEGG=Os08t0523600-01
Chr08	irgsp1_rep	five_prime_UTR	26026011	26026012	.	+	.	Parent=Os08t0523600-01
Chr08	irgsp1_rep	CDS	26026013	26026099	.	+	0	Parent=Os08t0523600-01
Chr08	irgsp1_rep	CDS	26026938	26027046	.	+	0	Parent=Os08t0523600-01
Chr08	irgsp1_rep	CDS	26028593	26028687	.	+	2	Parent=Os08t0523600-01
Chr08	irgsp1_rep	three_prime_UTR	26028688	26028884	.	+	.	Parent=Os08t0523600-01
Chr08	irgsp1_rep	mRNA	26031733	26032647	.	-	.	ID=Os08t0523700-00;Name=Os08t0523700-00;Locus_id=Os08g0523700;Note=BTB/POZ-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q84QP7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);TENOR=Os08t0523700-00
Chr08	irgsp1_rep	CDS	26031733	26032647	.	-	0	Parent=Os08t0523700-00
Chr08	irgsp1_rep	mRNA	26039322	26045316	.	-	.	ID=Os08t0523850-00;Name=Os08t0523850-00;Locus_id=Os08g0523850;Note=BTB/POZ-like domain containing protein.;Transcript_evidence=EU974550 (DDBJ);ORF_evidence=Q84QP4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069);TENOR=Os08t0523850-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	26044517	26045316	.	-	0	Parent=Os08t0523850-00
Chr08	irgsp1_rep	CDS	26039399	26039669	.	-	1	Parent=Os08t0523850-00
Chr08	irgsp1_rep	three_prime_UTR	26039322	26039398	.	-	.	Parent=Os08t0523850-00
Chr08	irgsp1_rep	mRNA	26046795	26049663	.	-	.	ID=Os08t0524000-01;Name=Os08t0524000-01;Locus_id=Os08g0524000;Note=Similar to signal recognition particle receptor beta subunit.;Transcript_evidence=AK067169 (DDBJ%2C Best hit);ORF_evidence=NP_001150140.1 (RefSeq);GO=Biological Process: small GTPase mediated signal transduction (GO:0007264),Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTP-binding protein domain (IPR005225),Signal recognition particle receptor%2C beta subunit (IPR019009),Small GTPase superfamily%2C ARF type (IPR024156);NIAS_FLcDNA=J013098B11;Expression=AK067169;TENOR=Os08t0524000-01;KEGG=Os08t0524000-01
Chr08	irgsp1_rep	five_prime_UTR	26049488	26049663	.	-	.	Parent=Os08t0524000-01
Chr08	irgsp1_rep	five_prime_UTR	26049380	26049381	.	-	.	Parent=Os08t0524000-01
Chr08	irgsp1_rep	CDS	26049250	26049379	.	-	0	Parent=Os08t0524000-01
Chr08	irgsp1_rep	CDS	26048580	26048662	.	-	2	Parent=Os08t0524000-01
Chr08	irgsp1_rep	CDS	26048049	26048135	.	-	0	Parent=Os08t0524000-01
Chr08	irgsp1_rep	CDS	26047770	26047918	.	-	0	Parent=Os08t0524000-01
Chr08	irgsp1_rep	CDS	26047427	26047558	.	-	1	Parent=Os08t0524000-01
Chr08	irgsp1_rep	CDS	26046983	26047172	.	-	1	Parent=Os08t0524000-01
Chr08	irgsp1_rep	three_prime_UTR	26046795	26046982	.	-	.	Parent=Os08t0524000-01
Chr08	irgsp1_rep	mRNA	26062466	26069827	.	+	.	ID=Os08t0524100-01;Name=Os08t0524100-01;Locus_id=Os08g0524100;Note=Similar to Type II inositol-1%2C4%2C5-trisphosphate 5-phosphatase 12 (EC 3.1.3.36) (At5PTase12) (FRAGILE FIBER3 protein).;Transcript_evidence=AK100236 (DDBJ%2C Best hit);ORF_evidence=NP_001030976.1 (RefSeq);GO=Molecular Function: inositol or phosphatidylinositol phosphatase activity (GO:0004437),Molecular Function: protein binding (GO:0005515);InterPro=Inositol polyphosphate-related phosphatase (IPR000300),WD40 repeat (IPR001680),Endonuclease/exonuclease/phosphatase (IPR005135),WD40/YVTN repeat-like-containing domain (IPR015943);NIAS_FLcDNA=J023052D01;Expression=AK100236;TENOR=Os08t0524100-01;KEGG=Os08t0524100-01 (EC:3.1.3.36)
Chr08	irgsp1_rep	five_prime_UTR	26062466	26062580	.	+	.	Parent=Os08t0524100-01
Chr08	irgsp1_rep	CDS	26062581	26063298	.	+	0	Parent=Os08t0524100-01
Chr08	irgsp1_rep	CDS	26064177	26064429	.	+	2	Parent=Os08t0524100-01
Chr08	irgsp1_rep	CDS	26064519	26065323	.	+	1	Parent=Os08t0524100-01
Chr08	irgsp1_rep	CDS	26066070	26066194	.	+	0	Parent=Os08t0524100-01
Chr08	irgsp1_rep	CDS	26066323	26066407	.	+	1	Parent=Os08t0524100-01
Chr08	irgsp1_rep	CDS	26066715	26066868	.	+	0	Parent=Os08t0524100-01
Chr08	irgsp1_rep	CDS	26066966	26067003	.	+	2	Parent=Os08t0524100-01
Chr08	irgsp1_rep	CDS	26067084	26067351	.	+	0	Parent=Os08t0524100-01
Chr08	irgsp1_rep	CDS	26067499	26067622	.	+	2	Parent=Os08t0524100-01
Chr08	irgsp1_rep	CDS	26067750	26068110	.	+	1	Parent=Os08t0524100-01
Chr08	irgsp1_rep	CDS	26069146	26069538	.	+	0	Parent=Os08t0524100-01
Chr08	irgsp1_rep	three_prime_UTR	26069539	26069827	.	+	.	Parent=Os08t0524100-01
Chr08	irgsp1_rep	mRNA	26072254	26074640	.	-	.	ID=Os08t0524200-01;Name=Os08t0524200-01;Locus_id=Os08g0524200;Note=Uncharacterised conserved protein UCP037471 domain containing protein.;Transcript_evidence=AK058714 (DDBJ%2C Best hit);ORF_evidence=B6ST21 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=CytoChrome b561%2C eukaryote (IPR004877),DOMON domain (IPR005018),CytoChrome b561/ferric reductase transmembrane (IPR006593),Uncharacterised conserved protein UCP037471 (IPR017214);NIAS_FLcDNA=001-019-D11;Expression=AK058714;TENOR=Os08t0524200-01;KEGG=Os08t0524200-01
Chr08	irgsp1_rep	five_prime_UTR	26074576	26074640	.	-	.	Parent=Os08t0524200-01
Chr08	irgsp1_rep	CDS	26073958	26074575	.	-	0	Parent=Os08t0524200-01
Chr08	irgsp1_rep	CDS	26072845	26073099	.	-	0	Parent=Os08t0524200-01
Chr08	irgsp1_rep	CDS	26072434	26072733	.	-	0	Parent=Os08t0524200-01
Chr08	irgsp1_rep	three_prime_UTR	26072254	26072433	.	-	.	Parent=Os08t0524200-01
Chr08	irgsp1_rep	mRNA	26086563	26087515	.	+	.	ID=Os08t0524400-00;Name=Os08t0524400-00;Locus_id=Os08g0524400;Note=Protein of unknown function DUF568%2C DOMON-like domain containing protein.;Transcript_evidence=CT835910 (DDBJ%2C Best hit);ORF_evidence=NP_001147237.1 (RefSeq);InterPro=DOMON domain (IPR005018),Uncharacterised conserved protein UCP037471 (IPR017214);TENOR=Os08t0524400-00;KEGG=Os08t0524400-00
Chr08	irgsp1_rep	five_prime_UTR	26086563	26086631	.	+	.	Parent=Os08t0524400-00
Chr08	irgsp1_rep	CDS	26086632	26087423	.	+	0	Parent=Os08t0524400-00
Chr08	irgsp1_rep	three_prime_UTR	26087424	26087515	.	+	.	Parent=Os08t0524400-00
Chr08	irgsp1_rep	mRNA	26091092	26092692	.	-	.	ID=Os08t0524501-00;Name=Os08t0524501-00;Locus_id=Os08g0524501;Note=Conserved hypothetical protein.;Transcript_evidence=BT016923 (DDBJ);ORF_evidence=C0PEW0 (UniProt);TENOR=Os08t0524501-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	26092552	26092692	.	-	0	Parent=Os08t0524501-00
Chr08	irgsp1_rep	CDS	26092340	26092429	.	-	0	Parent=Os08t0524501-00
Chr08	irgsp1_rep	three_prime_UTR	26092245	26092339	.	-	.	Parent=Os08t0524501-00
Chr08	irgsp1_rep	three_prime_UTR	26091092	26091181	.	-	.	Parent=Os08t0524501-00
Chr08	irgsp1_rep	mRNA	26092558	26092686	.	+	.	ID=Os08t0524600-00;Name=Os08t0524600-00;Locus_id=Os08g0524600;Oryzabase Gene Symbol Synonym(s)=rpL32_8.1;Oryzabase Gene Name Synonym(s)=Ribosomal protein L32;Note=Similar to 60S ribosomal protein L32.;Transcript_evidence=P51421 (UniProt);ORF_evidence=P51421 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L32e (IPR001515);Oryzabase=12431;TENOR=Os08t0524600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	26092558	26092686	.	+	0	Parent=Os08t0524600-00
Chr08	irgsp1_rep	mRNA	26102849	26105352	.	+	.	ID=Os08t0524800-01;Name=Os08t0524800-01;Locus_id=Os08g0524800;Oryzabase Gene Symbol Synonym(s)=OsbHLH091%2C bHLH091;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 091;Note=Similar to TA1 protein (Fragment).;Transcript_evidence=AK072041 (DDBJ%2C Best hit),AK099291 (DDBJ%2C Best hit);ORF_evidence=F1DKB1 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J013105J01,J023127C06;Oryzabase=15378;Expression=AK072041;TENOR=Os08t0524800-01;KEGG=Os08t0524800-01
Chr08	irgsp1_rep	five_prime_UTR	26102849	26103013	.	+	.	Parent=Os08t0524800-01
Chr08	irgsp1_rep	CDS	26103014	26103433	.	+	0	Parent=Os08t0524800-01
Chr08	irgsp1_rep	CDS	26103543	26103782	.	+	0	Parent=Os08t0524800-01
Chr08	irgsp1_rep	CDS	26103889	26103954	.	+	0	Parent=Os08t0524800-01
Chr08	irgsp1_rep	CDS	26104078	26104146	.	+	0	Parent=Os08t0524800-01
Chr08	irgsp1_rep	CDS	26104246	26104317	.	+	0	Parent=Os08t0524800-01
Chr08	irgsp1_rep	CDS	26104406	26104624	.	+	0	Parent=Os08t0524800-01
Chr08	irgsp1_rep	CDS	26104722	26104815	.	+	0	Parent=Os08t0524800-01
Chr08	irgsp1_rep	CDS	26104910	26104947	.	+	2	Parent=Os08t0524800-01
Chr08	irgsp1_rep	three_prime_UTR	26104948	26105352	.	+	.	Parent=Os08t0524800-01
Chr08	irgsp1_rep	mRNA	26103035	26104837	.	-	.	ID=Os08t0524900-00;Name=Os08t0524900-00;Locus_id=Os08g0524900;Note=Non-protein coding transcript.;Transcript_evidence=tplb0045a15 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os08t0524900-00
Chr08	irgsp1_rep	exon	26104713	26104837	.	-	.	Parent=Os08t0524900-00
Chr08	irgsp1_rep	exon	26104302	26104577	.	-	.	Parent=Os08t0524900-00
Chr08	irgsp1_rep	exon	26104094	26104128	.	-	.	Parent=Os08t0524900-00
Chr08	irgsp1_rep	exon	26103879	26103967	.	-	.	Parent=Os08t0524900-00
Chr08	irgsp1_rep	exon	26103540	26103774	.	-	.	Parent=Os08t0524900-00
Chr08	irgsp1_rep	exon	26103332	26103439	.	-	.	Parent=Os08t0524900-00
Chr08	irgsp1_rep	exon	26103035	26103258	.	-	.	Parent=Os08t0524900-00
Chr08	irgsp1_rep	mRNA	26120601	26123497	.	-	.	ID=Os08t0525000-01;Name=Os08t0525000-01;Locus_id=Os08g0525000;Oryzabase Gene Symbol Synonym(s)=OsRab11G2;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab11G2;Note=Ras GTPase family protein.;Transcript_evidence=AK103220 (DDBJ%2C Best hit);ORF_evidence=NP_001152371.1 (RefSeq);GO=Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225);NIAS_FLcDNA=J033122O18;Oryzabase=11109;Expression=AK103220;TENOR=Os08t0525000-01;KEGG=Os08t0525000-01
Chr08	irgsp1_rep	five_prime_UTR	26123372	26123497	.	-	.	Parent=Os08t0525000-01
Chr08	irgsp1_rep	CDS	26123035	26123371	.	-	0	Parent=Os08t0525000-01
Chr08	irgsp1_rep	CDS	26120807	26121120	.	-	2	Parent=Os08t0525000-01
Chr08	irgsp1_rep	three_prime_UTR	26120601	26120806	.	-	.	Parent=Os08t0525000-01
Chr08	irgsp1_rep	mRNA	26120916	26123421	.	+	.	ID=Os08t0525050-00;Name=Os08t0525050-00;Locus_id=Os08g0525050;Note=Non-protein coding transcript.;Transcript_evidence=BT084300 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0525050-00
Chr08	irgsp1_rep	exon	26120916	26121104	.	+	.	Parent=Os08t0525050-00
Chr08	irgsp1_rep	exon	26123019	26123421	.	+	.	Parent=Os08t0525050-00
Chr08	irgsp1_rep	mRNA	26124369	26125176	.	+	.	ID=Os08t0525100-00;Name=Os08t0525100-00;Locus_id=Os08g0525100;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0001n10 (Wheat FLcDNA);ORF_evidence=Q5W768 (UniProt);TENOR=Os08t0525100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	26124369	26124863	.	+	0	Parent=Os08t0525100-00
Chr08	irgsp1_rep	three_prime_UTR	26124864	26125176	.	+	.	Parent=Os08t0525100-00
Chr08	irgsp1_rep	mRNA	26134035	26137173	.	+	.	ID=Os08t0525500-01;Name=Os08t0525500-01;Locus_id=Os08g0525500;RAP-DB Gene Symbol Synonym(s)=RL1;RAP-DB Gene Name Synonym(s)=RADICLELESS 1;CGSNL Gene Symbol=RL1;CGSNL Gene Name=RADICLELESS 1;Oryzabase Gene Symbol Synonym(s)=OsRL1;Oryzabase Gene Name Synonym(s)=radicleless 1;Note=P-type pentatricopeptide repeat (PPR) protein%2C Mediation of the mitochondrial nad4 intron 1 splicing%2C Embryo and endosperm development;Transcript_evidence=AK073336 (truncated),Inferred from literature;ORF_evidence=A3BV11;GO=Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical domain superfamily (IPR011990),Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J033025O03 (truncated);Manual Curation=December 20%2C 2019;Literature_PMID=31848048;Oryzabase=23459;TENOR=Os08t0525500-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=mitochondrion (GO:0005739)
Chr08	irgsp1_rep	CDS	26134035	26135420	.	+	0	Parent=Os08t0525500-01
Chr08	irgsp1_rep	three_prime_UTR	26135421	26135497	.	+	.	Parent=Os08t0525500-01
Chr08	irgsp1_rep	three_prime_UTR	26136761	26137173	.	+	.	Parent=Os08t0525500-01
Chr08	irgsp1_rep	mRNA	26135225	26137324	.	+	.	ID=Os08t0525500-02;Name=Os08t0525500-02;Locus_id=Os08g0525500;CGSNL Gene Symbol=RL1;CGSNL Gene Name=RADICLELESS 1;Oryzabase Gene Symbol Synonym(s)=OsRL1;Oryzabase Gene Name Synonym(s)=radicleless 1;Note=Similar to predicted protein.;Transcript_evidence=AK063792 (DDBJ%2C Best hit);ORF_evidence=XP_002871814.1 (RefSeq);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=001-121-E10;Oryzabase=23459;Expression=AK063792;TENOR=Os08t0525500-02;KEGG=Os08t0525500-02
Chr08	irgsp1_rep	five_prime_UTR	26135225	26135228	.	+	.	Parent=Os08t0525500-02
Chr08	irgsp1_rep	CDS	26135229	26135420	.	+	0	Parent=Os08t0525500-02
Chr08	irgsp1_rep	three_prime_UTR	26135421	26135497	.	+	.	Parent=Os08t0525500-02
Chr08	irgsp1_rep	three_prime_UTR	26136761	26137324	.	+	.	Parent=Os08t0525500-02
Chr08	irgsp1_rep	mRNA	26138531	26143010	.	+	.	ID=Os08t0525600-01;Name=Os08t0525600-01;Locus_id=Os08g0525600;Oryzabase Gene Symbol Synonym(s)=OsFKBP62a%2C OsFKBP64;Oryzabase Gene Name Synonym(s)=FK506 binding protein 62a%2C FK506 binding protein 64;Note=Similar to Peptidylprolyl isomerase%3B FK506-binding protein.;Transcript_evidence=AK103172 (DDBJ%2C Best hit);ORF_evidence=B6TI78 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type%2C domain (IPR001179),Tetratricopeptide TPR-1 (IPR001440),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734),Elongated TPR repeat-containing domain (IPR023114),Peptidyl-prolyl cis-trans isomerase%2C FKBP-type (IPR023566);NIAS_FLcDNA=J033121G16;Oryzabase=10047;Expression=AK103172;TENOR=Os08t0525600-01;KEGG=Os08t0525600-01 (EC:5.2.1.8)
Chr08	irgsp1_rep	five_prime_UTR	26138531	26138636	.	+	.	Parent=Os08t0525600-01
Chr08	irgsp1_rep	CDS	26138637	26138841	.	+	0	Parent=Os08t0525600-01
Chr08	irgsp1_rep	CDS	26139624	26139710	.	+	2	Parent=Os08t0525600-01
Chr08	irgsp1_rep	CDS	26140361	26140621	.	+	2	Parent=Os08t0525600-01
Chr08	irgsp1_rep	CDS	26140694	26140768	.	+	2	Parent=Os08t0525600-01
Chr08	irgsp1_rep	CDS	26140855	26140935	.	+	2	Parent=Os08t0525600-01
Chr08	irgsp1_rep	CDS	26141024	26141218	.	+	2	Parent=Os08t0525600-01
Chr08	irgsp1_rep	CDS	26141335	26141424	.	+	2	Parent=Os08t0525600-01
Chr08	irgsp1_rep	CDS	26141538	26141713	.	+	2	Parent=Os08t0525600-01
Chr08	irgsp1_rep	CDS	26141807	26141929	.	+	0	Parent=Os08t0525600-01
Chr08	irgsp1_rep	CDS	26142041	26142187	.	+	0	Parent=Os08t0525600-01
Chr08	irgsp1_rep	CDS	26142269	26142393	.	+	0	Parent=Os08t0525600-01
Chr08	irgsp1_rep	CDS	26142486	26142606	.	+	1	Parent=Os08t0525600-01
Chr08	irgsp1_rep	CDS	26142704	26142760	.	+	0	Parent=Os08t0525600-01
Chr08	irgsp1_rep	three_prime_UTR	26142761	26143010	.	+	.	Parent=Os08t0525600-01
Chr08	irgsp1_rep	mRNA	26143082	26147844	.	-	.	ID=Os08t0525700-01;Name=Os08t0525700-01;Locus_id=Os08g0525700;Note=Conserved hypothetical protein.;Transcript_evidence=AK069638 (DDBJ%2C Best hit);ORF_evidence=A3BV13 (UniProt);NIAS_FLcDNA=J023026J04;Expression=AK069638;TENOR=Os08t0525700-01;KEGG=Os08t0525700-01
Chr08	irgsp1_rep	five_prime_UTR	26147798	26147844	.	-	.	Parent=Os08t0525700-01
Chr08	irgsp1_rep	CDS	26147755	26147797	.	-	0	Parent=Os08t0525700-01
Chr08	irgsp1_rep	CDS	26147381	26147602	.	-	2	Parent=Os08t0525700-01
Chr08	irgsp1_rep	CDS	26147164	26147310	.	-	2	Parent=Os08t0525700-01
Chr08	irgsp1_rep	CDS	26145542	26146471	.	-	2	Parent=Os08t0525700-01
Chr08	irgsp1_rep	CDS	26143257	26145118	.	-	2	Parent=Os08t0525700-01
Chr08	irgsp1_rep	three_prime_UTR	26143082	26143256	.	-	.	Parent=Os08t0525700-01
Chr08	irgsp1_rep	mRNA	26143108	26144302	.	-	.	ID=Os08t0525700-02;Name=Os08t0525700-02;Locus_id=Os08g0525700;Note=Hypothetical conserved gene.;Transcript_evidence=AK058552 (DDBJ%2C Best hit);ORF_evidence=A3BV13 (UniProt);NIAS_FLcDNA=001-017-C10;Expression=AK058552;TENOR=Os08t0525700-02;KEGG=Os08t0525700-02
Chr08	irgsp1_rep	five_prime_UTR	26144301	26144302	.	-	.	Parent=Os08t0525700-02
Chr08	irgsp1_rep	CDS	26143257	26144300	.	-	0	Parent=Os08t0525700-02
Chr08	irgsp1_rep	three_prime_UTR	26143108	26143256	.	-	.	Parent=Os08t0525700-02
Chr08	irgsp1_rep	mRNA	26151645	26153154	.	-	.	ID=Os08t0525800-00;Name=Os08t0525800-00;Locus_id=Os08g0525800;Note=Similar to glucan endo-1%2C3-beta-glucosidase A6.;Transcript_evidence=EU969258 (DDBJ);ORF_evidence=NP_001149815.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);TENOR=Os08t0525800-00;KEGG=Os08t0525800-00
Chr08	irgsp1_rep	five_prime_UTR	26153046	26153154	.	-	.	Parent=Os08t0525800-00
Chr08	irgsp1_rep	CDS	26151645	26153045	.	-	0	Parent=Os08t0525800-00
Chr08	irgsp1_rep	mRNA	26156444	26158598	.	-	.	ID=Os08t0525900-01;Name=Os08t0525900-01;Locus_id=Os08g0525900;Note=Similar to predicted protein.;Transcript_evidence=AK069770 (DDBJ%2C Best hit);ORF_evidence=Q9SFV8 (UniProt);NIAS_FLcDNA=J023029J24;Expression=AK069770;TENOR=Os08t0525900-01;KEGG=Os08t0525900-01
Chr08	irgsp1_rep	five_prime_UTR	26157719	26158598	.	-	.	Parent=Os08t0525900-01
Chr08	irgsp1_rep	CDS	26157578	26157718	.	-	0	Parent=Os08t0525900-01
Chr08	irgsp1_rep	three_prime_UTR	26156444	26157577	.	-	.	Parent=Os08t0525900-01
Chr08	irgsp1_rep	mRNA	26155728	26157935	.	-	.	ID=Os08t0525900-02;Name=Os08t0525900-02;Locus_id=Os08g0525900;Note=Similar to predicted protein.;Transcript_evidence=AK063395 (DDBJ%2C Best hit);ORF_evidence=Q9SFV8 (UniProt);NIAS_FLcDNA=001-114-H07;Expression=AK063395;TENOR=Os08t0525900-02;KEGG=Os08t0525900-02
Chr08	irgsp1_rep	five_prime_UTR	26157719	26157935	.	-	.	Parent=Os08t0525900-02
Chr08	irgsp1_rep	CDS	26157578	26157718	.	-	0	Parent=Os08t0525900-02
Chr08	irgsp1_rep	three_prime_UTR	26155728	26157577	.	-	.	Parent=Os08t0525900-02
Chr08	irgsp1_rep	mRNA	26165068	26167022	.	-	.	ID=Os08t0526100-01;Name=Os08t0526100-01;Locus_id=Os08g0526100;Oryzabase Gene Symbol Synonym(s)=OsUGlcAE2;Oryzabase Gene Name Synonym(s)=UDP-glucuronic acid 4-epimerase 2;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK100965 (DDBJ%2C Best hit);ORF_evidence=NP_001147328.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: racemase and epimerase activity%2C acting on carbohydrates and derivatives (GO:0016857),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),Nucleotide sugar epimerase (IPR008089),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023142D13;Oryzabase=15783;Expression=AK100965;TENOR=Os08t0526100-01;KEGG=Os08t0526100-01
Chr08	irgsp1_rep	five_prime_UTR	26166958	26167022	.	-	.	Parent=Os08t0526100-01
Chr08	irgsp1_rep	CDS	26165521	26166957	.	-	0	Parent=Os08t0526100-01
Chr08	irgsp1_rep	three_prime_UTR	26165068	26165520	.	-	.	Parent=Os08t0526100-01
Chr08	irgsp1_rep	mRNA	26165561	26167031	.	+	.	ID=Os08t0526150-00;Name=Os08t0526150-00;Locus_id=Os08g0526150;Note=Hypothetical protein.;Transcript_evidence=tplb0035b24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0526150-00
Chr08	irgsp1_rep	five_prime_UTR	26165561	26165562	.	+	.	Parent=Os08t0526150-00
Chr08	irgsp1_rep	CDS	26165563	26167029	.	+	0	Parent=Os08t0526150-00
Chr08	irgsp1_rep	three_prime_UTR	26167030	26167031	.	+	.	Parent=Os08t0526150-00
Chr08	irgsp1_rep	mRNA	26174083	26176027	.	+	.	ID=Os08t0526200-01;Name=Os08t0526200-01;Locus_id=Os08g0526200;Note=Conserved hypothetical protein.;Transcript_evidence=AK071263 (DDBJ%2C Best hit);ORF_evidence=NP_001062296.1 (RefSeq);NIAS_FLcDNA=J023083H03;TENOR=Os08t0526200-01;KEGG=Os08t0526200-01
Chr08	irgsp1_rep	five_prime_UTR	26174083	26174332	.	+	.	Parent=Os08t0526200-01
Chr08	irgsp1_rep	five_prime_UTR	26174412	26175709	.	+	.	Parent=Os08t0526200-01
Chr08	irgsp1_rep	CDS	26175710	26175955	.	+	0	Parent=Os08t0526200-01
Chr08	irgsp1_rep	three_prime_UTR	26175956	26176027	.	+	.	Parent=Os08t0526200-01
Chr08	irgsp1_rep	mRNA	26174211	26176025	.	+	.	ID=Os08t0526200-02;Name=Os08t0526200-02;Locus_id=Os08g0526200;Note=Conserved hypothetical protein.;Transcript_evidence=AK100612 (DDBJ%2C Best hit);ORF_evidence=NP_001062296.1 (RefSeq);NIAS_FLcDNA=J023107M13;TENOR=Os08t0526200-02;KEGG=Os08t0526200-02
Chr08	irgsp1_rep	five_prime_UTR	26174211	26175709	.	+	.	Parent=Os08t0526200-02
Chr08	irgsp1_rep	CDS	26175710	26175955	.	+	0	Parent=Os08t0526200-02
Chr08	irgsp1_rep	three_prime_UTR	26175956	26176025	.	+	.	Parent=Os08t0526200-02
Chr08	irgsp1_rep	mRNA	26176387	26185086	.	+	.	ID=Os08t0526300-01;Name=Os08t0526300-01;Locus_id=Os08g0526300;Note=Similar to cDNA clone:001-038-D09%2C full insert sequence.;Transcript_evidence=AK121104 (DDBJ%2C Best hit);ORF_evidence=B7E6T2 (UniProt);NIAS_FLcDNA=J023069O17;Oryzabase=22762;Expression=AK121104;TENOR=Os08t0526300-01;KEGG=Os08t0526300-01
Chr08	irgsp1_rep	five_prime_UTR	26176387	26177970	.	+	.	Parent=Os08t0526300-01
Chr08	irgsp1_rep	CDS	26177971	26178040	.	+	0	Parent=Os08t0526300-01
Chr08	irgsp1_rep	CDS	26178808	26178908	.	+	2	Parent=Os08t0526300-01
Chr08	irgsp1_rep	CDS	26179290	26179379	.	+	0	Parent=Os08t0526300-01
Chr08	irgsp1_rep	three_prime_UTR	26179380	26180804	.	+	.	Parent=Os08t0526300-01
Chr08	irgsp1_rep	three_prime_UTR	26180993	26181044	.	+	.	Parent=Os08t0526300-01
Chr08	irgsp1_rep	three_prime_UTR	26183709	26183819	.	+	.	Parent=Os08t0526300-01
Chr08	irgsp1_rep	three_prime_UTR	26183894	26183991	.	+	.	Parent=Os08t0526300-01
Chr08	irgsp1_rep	three_prime_UTR	26184076	26184160	.	+	.	Parent=Os08t0526300-01
Chr08	irgsp1_rep	three_prime_UTR	26184851	26185086	.	+	.	Parent=Os08t0526300-01
Chr08	irgsp1_rep	mRNA	26177321	26185117	.	+	.	ID=Os08t0526300-02;Name=Os08t0526300-02;Locus_id=Os08g0526300;Note=tRNA-binding arm domain containing protein.;Transcript_evidence=AK070382 (DDBJ%2C Best hit);ORF_evidence=NP_849422.1 (RefSeq);NIAS_FLcDNA=J023052D06;Oryzabase=22762;Expression=AK070382;TENOR=Os08t0526300-02;KEGG=Os08t0526300-02
Chr08	irgsp1_rep	five_prime_UTR	26177321	26177489	.	+	.	Parent=Os08t0526300-02
Chr08	irgsp1_rep	CDS	26177490	26177814	.	+	0	Parent=Os08t0526300-02
Chr08	irgsp1_rep	CDS	26177942	26178040	.	+	2	Parent=Os08t0526300-02
Chr08	irgsp1_rep	CDS	26178808	26178908	.	+	2	Parent=Os08t0526300-02
Chr08	irgsp1_rep	CDS	26179290	26179346	.	+	0	Parent=Os08t0526300-02
Chr08	irgsp1_rep	CDS	26180728	26180804	.	+	0	Parent=Os08t0526300-02
Chr08	irgsp1_rep	CDS	26180993	26181044	.	+	1	Parent=Os08t0526300-02
Chr08	irgsp1_rep	CDS	26183709	26183819	.	+	0	Parent=Os08t0526300-02
Chr08	irgsp1_rep	CDS	26183894	26183991	.	+	0	Parent=Os08t0526300-02
Chr08	irgsp1_rep	CDS	26184076	26184145	.	+	1	Parent=Os08t0526300-02
Chr08	irgsp1_rep	three_prime_UTR	26184146	26184160	.	+	.	Parent=Os08t0526300-02
Chr08	irgsp1_rep	three_prime_UTR	26184848	26185117	.	+	.	Parent=Os08t0526300-02
Chr08	irgsp1_rep	mRNA	26177384	26185117	.	+	.	ID=Os08t0526300-03;Name=Os08t0526300-03;Locus_id=Os08g0526300;Note=tRNA-binding arm domain containing protein.;Transcript_evidence=AK061736 (DDBJ%2C Best hit),AK104593 (DDBJ%2C Best hit);ORF_evidence=NP_849422.1 (RefSeq);NIAS_FLcDNA=001-038-D09,006-308-B08;Oryzabase=22762;Expression=AK061736;TENOR=Os08t0526300-03;KEGG=Os08t0526300-03
Chr08	irgsp1_rep	five_prime_UTR	26177384	26177489	.	+	.	Parent=Os08t0526300-03
Chr08	irgsp1_rep	CDS	26177490	26177814	.	+	0	Parent=Os08t0526300-03
Chr08	irgsp1_rep	CDS	26177942	26178040	.	+	2	Parent=Os08t0526300-03
Chr08	irgsp1_rep	CDS	26178808	26178908	.	+	2	Parent=Os08t0526300-03
Chr08	irgsp1_rep	CDS	26179290	26179346	.	+	0	Parent=Os08t0526300-03
Chr08	irgsp1_rep	CDS	26180728	26180804	.	+	0	Parent=Os08t0526300-03
Chr08	irgsp1_rep	CDS	26180993	26181044	.	+	1	Parent=Os08t0526300-03
Chr08	irgsp1_rep	CDS	26183709	26183819	.	+	0	Parent=Os08t0526300-03
Chr08	irgsp1_rep	CDS	26183894	26183991	.	+	0	Parent=Os08t0526300-03
Chr08	irgsp1_rep	CDS	26184076	26184145	.	+	1	Parent=Os08t0526300-03
Chr08	irgsp1_rep	three_prime_UTR	26184146	26184160	.	+	.	Parent=Os08t0526300-03
Chr08	irgsp1_rep	three_prime_UTR	26184851	26185117	.	+	.	Parent=Os08t0526300-03
Chr08	irgsp1_rep	mRNA	26190004	26191113	.	-	.	ID=Os08t0526350-00;Name=Os08t0526350-00;Locus_id=Os08g0526350;Note=Hypothetical conserved gene.;Transcript_evidence=tplb0010m20 (Wheat FLcDNA);ORF_evidence=Q7F1E3 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);TENOR=Os08t0526350-00;KEGG=Os08t0526350-00
Chr08	irgsp1_rep	CDS	26190934	26191113	.	-	0	Parent=Os08t0526350-00
Chr08	irgsp1_rep	CDS	26190775	26190844	.	-	0	Parent=Os08t0526350-00
Chr08	irgsp1_rep	CDS	26190388	26190491	.	-	2	Parent=Os08t0526350-00
Chr08	irgsp1_rep	CDS	26190004	26190249	.	-	0	Parent=Os08t0526350-00
Chr08	irgsp1_rep	mRNA	26192694	26196096	.	-	.	ID=Os08t0526400-01;Name=Os08t0526400-01;Locus_id=Os08g0526400;Note=Defence response%2C Rin4 domain containing protein.;Transcript_evidence=AK120803 (DDBJ%2C Best hit);ORF_evidence=D8WJ55 (UniProt);InterPro=Pathogenic type III effector avirulence factor Avr cleavage site (IPR008700);NIAS_FLcDNA=J023013B14;Expression=AK120803;TENOR=Os08t0526400-01;KEGG=Os08t0526400-01
Chr08	irgsp1_rep	five_prime_UTR	26195914	26196096	.	-	.	Parent=Os08t0526400-01
Chr08	irgsp1_rep	five_prime_UTR	26194190	26194199	.	-	.	Parent=Os08t0526400-01
Chr08	irgsp1_rep	CDS	26193677	26194189	.	-	0	Parent=Os08t0526400-01
Chr08	irgsp1_rep	CDS	26193367	26193582	.	-	0	Parent=Os08t0526400-01
Chr08	irgsp1_rep	CDS	26193024	26193053	.	-	0	Parent=Os08t0526400-01
Chr08	irgsp1_rep	three_prime_UTR	26192694	26193023	.	-	.	Parent=Os08t0526400-01
Chr08	irgsp1_rep	mRNA	26198221	26201552	.	+	.	ID=Os08t0526500-01;Name=Os08t0526500-01;Locus_id=Os08g0526500;Note=Similar to SOX-1 protein.;Transcript_evidence=AK073431 (DDBJ%2C Best hit);ORF_evidence=B6T6B1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Sterile alpha motif domain (IPR001660),Sterile alpha motif/pointed domain (IPR013761),Sterile alpha motif%2C type 1 (IPR021129);NIAS_FLcDNA=J033042D10;Expression=AK073431;TENOR=Os08t0526500-01;KEGG=Os08t0526500-01
Chr08	irgsp1_rep	five_prime_UTR	26198221	26198303	.	+	.	Parent=Os08t0526500-01
Chr08	irgsp1_rep	CDS	26198304	26198443	.	+	0	Parent=Os08t0526500-01
Chr08	irgsp1_rep	CDS	26199136	26199203	.	+	1	Parent=Os08t0526500-01
Chr08	irgsp1_rep	CDS	26199305	26199597	.	+	2	Parent=Os08t0526500-01
Chr08	irgsp1_rep	CDS	26199978	26200050	.	+	0	Parent=Os08t0526500-01
Chr08	irgsp1_rep	CDS	26200133	26200197	.	+	2	Parent=Os08t0526500-01
Chr08	irgsp1_rep	CDS	26201152	26201226	.	+	0	Parent=Os08t0526500-01
Chr08	irgsp1_rep	three_prime_UTR	26201227	26201552	.	+	.	Parent=Os08t0526500-01
Chr08	irgsp1_rep	mRNA	26204324	26205033	.	-	.	ID=Os08t0526633-01;Name=Os08t0526633-01;Locus_id=Os08g0526633;Note=Non-protein coding transcript.;Transcript_evidence=AK318545 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J075111P10;TENOR=Os08t0526633-01
Chr08	irgsp1_rep	exon	26204324	26205033	.	-	.	Parent=Os08t0526633-01
Chr08	irgsp1_rep	mRNA	26214358	26218970	.	+	.	ID=Os08t0526700-00;Name=Os08t0526700-00;Locus_id=Os08g0526700;Note=Similar to UBA/UBX 33.3 kDa protein.;Transcript_evidence=EU968494 (DDBJ);ORF_evidence=NP_001150837.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal (IPR000449),UBA-like (IPR009060),Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (IPR015940);TENOR=Os08t0526700-00;KEGG=Os08t0526700-00
Chr08	irgsp1_rep	CDS	26214358	26214499	.	+	0	Parent=Os08t0526700-00
Chr08	irgsp1_rep	CDS	26214696	26214772	.	+	2	Parent=Os08t0526700-00
Chr08	irgsp1_rep	CDS	26215013	26215083	.	+	0	Parent=Os08t0526700-00
Chr08	irgsp1_rep	CDS	26215690	26215744	.	+	1	Parent=Os08t0526700-00
Chr08	irgsp1_rep	CDS	26216368	26216429	.	+	0	Parent=Os08t0526700-00
Chr08	irgsp1_rep	CDS	26216514	26216595	.	+	1	Parent=Os08t0526700-00
Chr08	irgsp1_rep	CDS	26217312	26217410	.	+	0	Parent=Os08t0526700-00
Chr08	irgsp1_rep	three_prime_UTR	26217411	26217540	.	+	.	Parent=Os08t0526700-00
Chr08	irgsp1_rep	three_prime_UTR	26218001	26218075	.	+	.	Parent=Os08t0526700-00
Chr08	irgsp1_rep	three_prime_UTR	26218150	26218224	.	+	.	Parent=Os08t0526700-00
Chr08	irgsp1_rep	three_prime_UTR	26218536	26218655	.	+	.	Parent=Os08t0526700-00
Chr08	irgsp1_rep	three_prime_UTR	26218765	26218970	.	+	.	Parent=Os08t0526700-00
Chr08	irgsp1_rep	mRNA	26217941	26218970	.	-	.	ID=Os08t0526900-00;Name=Os08t0526900-00;Locus_id=Os08g0526900;Note=Non-protein coding transcript.;Transcript_evidence=BT037408 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0526900-00
Chr08	irgsp1_rep	exon	26218513	26218970	.	-	.	Parent=Os08t0526900-00
Chr08	irgsp1_rep	exon	26217941	26218290	.	-	.	Parent=Os08t0526900-00
Chr08	irgsp1_rep	mRNA	26233716	26238507	.	-	.	ID=Os08t0527100-01;Name=Os08t0527100-01;Locus_id=Os08g0527100;CGSNL Gene Symbol=UBP1-1;CGSNL Gene Name=UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-1;Oryzabase Gene Symbol Synonym(s)=OsUBP1-1%2C OsUBP29%2C UBP29;Oryzabase Gene Name Synonym(s)=ubiquitin-specific processing protease 1-1%2C Ubiquitin-specific protease 29;Note=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 family protein.;Transcript_evidence=AK119411 (DDBJ%2C Best hit);ORF_evidence=A2YXB3 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Molecular Function: ubiquitin thiolesterase activity (GO:0004221),Molecular Function: zinc ion binding (GO:0008270);InterPro=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (IPR001394),Zinc finger%2C UBP-type (IPR001607),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2%2C conserved site (IPR018200);NIAS_FLcDNA=001-132-F09;Oryzabase=22864;Expression=AK119411;TENOR=Os08t0527100-01;KEGG=Os08t0527100-01
Chr08	irgsp1_rep	five_prime_UTR	26238362	26238507	.	-	.	Parent=Os08t0527100-01
Chr08	irgsp1_rep	five_prime_UTR	26237929	26237933	.	-	.	Parent=Os08t0527100-01
Chr08	irgsp1_rep	CDS	26236263	26237928	.	-	0	Parent=Os08t0527100-01
Chr08	irgsp1_rep	CDS	26234735	26235716	.	-	2	Parent=Os08t0527100-01
Chr08	irgsp1_rep	CDS	26234026	26234257	.	-	1	Parent=Os08t0527100-01
Chr08	irgsp1_rep	three_prime_UTR	26233716	26234025	.	-	.	Parent=Os08t0527100-01
Chr08	irgsp1_rep	mRNA	26245378	26250946	.	-	.	ID=Os08t0527300-01;Name=Os08t0527300-01;Locus_id=Os08g0527300;CGSNL Gene Symbol=UBP1-3;CGSNL Gene Name=UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-3;Oryzabase Gene Symbol Synonym(s)=OsUBP1-3;Oryzabase Gene Name Synonym(s)=ubiquitin-specific processing protease 1-3;Note=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 domain containing protein.;Transcript_evidence=AK121686 (DDBJ%2C Best hit);ORF_evidence=B9G1W9 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Molecular Function: ubiquitin thiolesterase activity (GO:0004221),Molecular Function: zinc ion binding (GO:0008270);InterPro=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (IPR001394),Zinc finger%2C UBP-type (IPR001607),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J033070M04;Oryzabase=22866;TENOR=Os08t0527300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	26250802	26250946	.	-	.	Parent=Os08t0527300-01
Chr08	irgsp1_rep	five_prime_UTR	26250066	26250084	.	-	.	Parent=Os08t0527300-01
Chr08	irgsp1_rep	CDS	26248482	26250065	.	-	0	Parent=Os08t0527300-01
Chr08	irgsp1_rep	three_prime_UTR	26245378	26248481	.	-	.	Parent=Os08t0527300-01
Chr08	irgsp1_rep	mRNA	26253487	26256814	.	-	.	ID=Os08t0527400-01;Name=Os08t0527400-01;Locus_id=Os08g0527400;CGSNL Gene Symbol=UBP1-4;CGSNL Gene Name=UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-4;Oryzabase Gene Symbol Synonym(s)=OsUBP1-4%2C OsUBP2%2C UBP2;Oryzabase Gene Name Synonym(s)=ubiquitin-specific processing protease 1-4%2C Ubiquitin-specific protease 2;Note=Similar to Ubiquitin carboxyl-terminal hydrolase.;Transcript_evidence=AK119389 (DDBJ%2C Best hit);ORF_evidence=A3BV27 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Molecular Function: ubiquitin thiolesterase activity (GO:0004221),Molecular Function: zinc ion binding (GO:0008270);InterPro=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (IPR001394),Zinc finger%2C UBP-type (IPR001607),Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2%2C conserved site (IPR018200);NIAS_FLcDNA=001-132-C06;Oryzabase=22867;Expression=AK119389;TENOR=Os08t0527400-01;KEGG=Os08t0527400-01
Chr08	irgsp1_rep	five_prime_UTR	26256763	26256814	.	-	.	Parent=Os08t0527400-01
Chr08	irgsp1_rep	CDS	26256708	26256762	.	-	0	Parent=Os08t0527400-01
Chr08	irgsp1_rep	CDS	26255137	26256434	.	-	2	Parent=Os08t0527400-01
Chr08	irgsp1_rep	three_prime_UTR	26253487	26255136	.	-	.	Parent=Os08t0527400-01
Chr08	irgsp1_rep	mRNA	26263393	26268141	.	-	.	ID=Os08t0527600-01;Name=Os08t0527600-01;Locus_id=Os08g0527600;CGSNL Gene Symbol=UBP1-5;CGSNL Gene Name=UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-5;Oryzabase Gene Symbol Synonym(s)=OsUBP1-5%2C OsUBP31%2C UBP31;Oryzabase Gene Name Synonym(s)=ubiquitin-specific processing protease 1-5%2C Ubiquitin-specific protease 31;Note=Similar to Ubiquitin carboxyl-terminal hydrolase.;Transcript_evidence=AK102160 (DDBJ%2C Best hit);ORF_evidence=A3BV29 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Molecular Function: ubiquitin thiolesterase activity (GO:0004221),Molecular Function: zinc ion binding (GO:0008270);InterPro=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (IPR001394),Zinc finger%2C UBP-type (IPR001607),Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2%2C conserved site (IPR018200);NIAS_FLcDNA=J033086G06;Oryzabase=22521;TENOR=Os08t0527600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	26267922	26268141	.	-	.	Parent=Os08t0527600-01
Chr08	irgsp1_rep	five_prime_UTR	26267797	26267797	.	-	.	Parent=Os08t0527600-01
Chr08	irgsp1_rep	CDS	26266489	26267796	.	-	0	Parent=Os08t0527600-01
Chr08	irgsp1_rep	three_prime_UTR	26265347	26266488	.	-	.	Parent=Os08t0527600-01
Chr08	irgsp1_rep	three_prime_UTR	26263393	26264241	.	-	.	Parent=Os08t0527600-01
Chr08	irgsp1_rep	mRNA	26269575	26270741	.	-	.	ID=Os08t0527700-00;Name=Os08t0527700-00;Locus_id=Os08g0527700;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Similar to POT family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B6SXJ7 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);Oryzabase=23677;TENOR=Os08t0527700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	26269575	26270741	.	-	0	Parent=Os08t0527700-00
Chr08	irgsp1_rep	mRNA	26272677	26273155	.	-	.	ID=Os08t0527733-00;Name=Os08t0527733-00;Locus_id=Os08g0527733;Note=Similar to proton-dependent oligopeptide transporter.;Transcript_evidence=ab initio prediction;ORF_evidence=XP_002327271.1 (RefSeq);TENOR=Os08t0527733-00
Chr08	irgsp1_rep	CDS	26273002	26273155	.	-	0	Parent=Os08t0527733-00
Chr08	irgsp1_rep	CDS	26272677	26272888	.	-	2	Parent=Os08t0527733-00
Chr08	irgsp1_rep	mRNA	26272679	26273109	.	+	.	ID=Os08t0527766-00;Name=Os08t0527766-00;Locus_id=Os08g0527766;Note=Non-protein coding transcript.;Transcript_evidence=EU946594 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0527766-00
Chr08	irgsp1_rep	exon	26272679	26273109	.	+	.	Parent=Os08t0527766-00
Chr08	irgsp1_rep	mRNA	26275315	26279335	.	-	.	ID=Os08t0527800-01;Name=Os08t0527800-01;Locus_id=Os08g0527800;CGSNL Gene Symbol=UBP1-6;CGSNL Gene Name=UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-6;Oryzabase Gene Symbol Synonym(s)=OsUBP1-6;Oryzabase Gene Name Synonym(s)=ubiquitin-specific processing protease 1-6;Note=Similar to Ubiquitin carboxyl-terminal hydrolase.;Transcript_evidence=AK063392 (DDBJ%2C Best hit);ORF_evidence=A3BV31 (UniProt);NIAS_FLcDNA=001-114-H04;Oryzabase=22868;TENOR=Os08t0527800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	26279334	26279335	.	-	.	Parent=Os08t0527800-01
Chr08	irgsp1_rep	CDS	26278896	26279333	.	-	0	Parent=Os08t0527800-01
Chr08	irgsp1_rep	three_prime_UTR	26277455	26278895	.	-	.	Parent=Os08t0527800-01
Chr08	irgsp1_rep	three_prime_UTR	26275315	26276025	.	-	.	Parent=Os08t0527800-01
Chr08	irgsp1_rep	mRNA	26282030	26285943	.	-	.	ID=Os08t0527900-00;Name=Os08t0527900-00;Locus_id=Os08g0527900;CGSNL Gene Symbol=UBP1-7;CGSNL Gene Name=UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-7;Oryzabase Gene Symbol Synonym(s)=OsUBP1-7%2C OsUBP32%2C UBP32;Oryzabase Gene Name Synonym(s)=ubiquitin-specific processing protease 1-7%2C Ubiquitin-specific protease 32;Note=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2YXC1 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Molecular Function: ubiquitin thiolesterase activity (GO:0004221),Molecular Function: zinc ion binding (GO:0008270);InterPro=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (IPR001394),Zinc finger%2C UBP-type (IPR001607),Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2%2C conserved site (IPR018200);Oryzabase=22869;TENOR=Os08t0527900-00;KEGG=Os08t0527900-00
Chr08	irgsp1_rep	CDS	26285757	26285943	.	-	0	Parent=Os08t0527900-00
Chr08	irgsp1_rep	CDS	26284416	26285609	.	-	2	Parent=Os08t0527900-00
Chr08	irgsp1_rep	CDS	26283214	26283853	.	-	2	Parent=Os08t0527900-00
Chr08	irgsp1_rep	CDS	26282030	26282261	.	-	1	Parent=Os08t0527900-00
Chr08	irgsp1_rep	mRNA	26287796	26291466	.	-	.	ID=Os08t0528000-00;Name=Os08t0528000-00;Locus_id=Os08g0528000;Note=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2YXC2 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Molecular Function: ubiquitin thiolesterase activity (GO:0004221),Molecular Function: zinc ion binding (GO:0008270);InterPro=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (IPR001394),Zinc finger%2C UBP-type (IPR001607),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2%2C conserved site (IPR018200);TENOR=Os08t0528000-00;KEGG=Os08t0528000-00
Chr08	irgsp1_rep	CDS	26289960	26291466	.	-	0	Parent=Os08t0528000-00
Chr08	irgsp1_rep	CDS	26288800	26289424	.	-	2	Parent=Os08t0528000-00
Chr08	irgsp1_rep	CDS	26287796	26288027	.	-	1	Parent=Os08t0528000-00
Chr08	irgsp1_rep	mRNA	26293690	26297999	.	-	.	ID=Os08t0528100-00;Name=Os08t0528100-00;Locus_id=Os08g0528100;CGSNL Gene Symbol=UBP1-8;CGSNL Gene Name=UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-8;Oryzabase Gene Symbol Synonym(s)=OsUBP1-8%2C OsUBP33%2C UBP33;Oryzabase Gene Name Synonym(s)=Ubiquitin carboxyl-terminal hydrolase%2C ubiquitin-specific processing protease 1-8%2C Ubiquitin-specific protease 33;Note=Similar to Ubiquitin carboxyl-terminal hydrolase.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G1X1 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Molecular Function: ubiquitin thiolesterase activity (GO:0004221),Molecular Function: zinc ion binding (GO:0008270);InterPro=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (IPR001394),Zinc finger%2C UBP-type (IPR001607),Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2%2C conserved site (IPR018200);Oryzabase=22523;TENOR=Os08t0528100-00;KEGG=Os08t0528100-00
Chr08	irgsp1_rep	CDS	26297885	26297999	.	-	0	Parent=Os08t0528100-00
Chr08	irgsp1_rep	CDS	26296195	26297763	.	-	2	Parent=Os08t0528100-00
Chr08	irgsp1_rep	CDS	26295253	26295600	.	-	2	Parent=Os08t0528100-00
Chr08	irgsp1_rep	CDS	26294725	26295226	.	-	2	Parent=Os08t0528100-00
Chr08	irgsp1_rep	CDS	26293690	26293921	.	-	1	Parent=Os08t0528100-00
Chr08	irgsp1_rep	mRNA	26301111	26301879	.	+	.	ID=Os08t0528200-01;Name=Os08t0528200-01;Locus_id=Os08g0528200;Note=Conserved hypothetical protein.;Transcript_evidence=AK072801 (DDBJ%2C Best hit);ORF_evidence=A3BV35 (UniProt);NIAS_FLcDNA=J023138N11;TENOR=Os08t0528200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	26301111	26301111	.	+	.	Parent=Os08t0528200-01
Chr08	irgsp1_rep	CDS	26301112	26301753	.	+	0	Parent=Os08t0528200-01
Chr08	irgsp1_rep	three_prime_UTR	26301754	26301879	.	+	.	Parent=Os08t0528200-01
Chr08	irgsp1_rep	mRNA	26307444	26310379	.	-	.	ID=Os08t0528500-01;Name=Os08t0528500-01;Locus_id=Os08g0528500;Note=Uncharacterised protein family UPF0016 domain containing protein.;Transcript_evidence=AK111028 (DDBJ%2C Best hit);ORF_evidence=A2YXC7 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Uncharacterised protein family UPF0016 (IPR001727);NIAS_FLcDNA=002-174-H06;Expression=AK111028;TENOR=Os08t0528500-01;KEGG=Os08t0528500-01
Chr08	irgsp1_rep	five_prime_UTR	26310237	26310379	.	-	.	Parent=Os08t0528500-01
Chr08	irgsp1_rep	CDS	26310150	26310236	.	-	0	Parent=Os08t0528500-01
Chr08	irgsp1_rep	CDS	26309993	26310049	.	-	0	Parent=Os08t0528500-01
Chr08	irgsp1_rep	CDS	26309768	26309881	.	-	0	Parent=Os08t0528500-01
Chr08	irgsp1_rep	CDS	26309529	26309627	.	-	0	Parent=Os08t0528500-01
Chr08	irgsp1_rep	CDS	26309354	26309426	.	-	0	Parent=Os08t0528500-01
Chr08	irgsp1_rep	CDS	26308652	26308737	.	-	2	Parent=Os08t0528500-01
Chr08	irgsp1_rep	CDS	26308092	26308175	.	-	0	Parent=Os08t0528500-01
Chr08	irgsp1_rep	CDS	26307840	26307899	.	-	0	Parent=Os08t0528500-01
Chr08	irgsp1_rep	CDS	26307537	26307725	.	-	0	Parent=Os08t0528500-01
Chr08	irgsp1_rep	three_prime_UTR	26307444	26307536	.	-	.	Parent=Os08t0528500-01
Chr08	irgsp1_rep	mRNA	26312545	26313758	.	-	.	ID=Os08t0528601-00;Name=Os08t0528601-00;Locus_id=Os08g0528601;Note=Similar to predicted protein.;Transcript_evidence=FP100158 (DDBJ);ORF_evidence=B9G1X2 (UniProt);TENOR=Os08t0528601-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	26313615	26313758	.	-	.	Parent=Os08t0528601-00
Chr08	irgsp1_rep	CDS	26313462	26313614	.	-	0	Parent=Os08t0528601-00
Chr08	irgsp1_rep	CDS	26312669	26312743	.	-	0	Parent=Os08t0528601-00
Chr08	irgsp1_rep	three_prime_UTR	26312545	26312668	.	-	.	Parent=Os08t0528601-00
Chr08	irgsp1_rep	mRNA	26314755	26317826	.	-	.	ID=Os08t0528700-01;Name=Os08t0528700-01;Locus_id=Os08g0528700;Note=Conserved hypothetical protein.;Transcript_evidence=AK102859 (DDBJ%2C Best hit);ORF_evidence=B9G1X3 (UniProt);NIAS_FLcDNA=J033111E02;TENOR=Os08t0528700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	26317777	26317826	.	-	.	Parent=Os08t0528700-01
Chr08	irgsp1_rep	CDS	26317075	26317776	.	-	0	Parent=Os08t0528700-01
Chr08	irgsp1_rep	three_prime_UTR	26316407	26317074	.	-	.	Parent=Os08t0528700-01
Chr08	irgsp1_rep	three_prime_UTR	26316232	26316337	.	-	.	Parent=Os08t0528700-01
Chr08	irgsp1_rep	three_prime_UTR	26314755	26315742	.	-	.	Parent=Os08t0528700-01
Chr08	irgsp1_rep	mRNA	26316547	26317815	.	+	.	ID=Os08t0528750-00;Name=Os08t0528750-00;Locus_id=Os08g0528750;Note=Hypothetical protein.;Transcript_evidence=tplb0060m09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0528750-00
Chr08	irgsp1_rep	five_prime_UTR	26316547	26317170	.	+	.	Parent=Os08t0528750-00
Chr08	irgsp1_rep	CDS	26317171	26317609	.	+	0	Parent=Os08t0528750-00
Chr08	irgsp1_rep	CDS	26317670	26317701	.	+	2	Parent=Os08t0528750-00
Chr08	irgsp1_rep	three_prime_UTR	26317702	26317815	.	+	.	Parent=Os08t0528750-00
Chr08	irgsp1_rep	mRNA	26319273	26322525	.	-	.	ID=Os08t0528800-01;Name=Os08t0528800-01;Locus_id=Os08g0528800;Note=Peptidase%2C trypsin-like serine and cysteine domain containing protein.;Transcript_evidence=AK122011 (DDBJ%2C Best hit);ORF_evidence=A2YXD1 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Peptidase cysteine/serine%2C trypsin-like (IPR009003);NIAS_FLcDNA=J033111I11;Expression=AK122011;TENOR=Os08t0528800-01;KEGG=Os08t0528800-01
Chr08	irgsp1_rep	five_prime_UTR	26322353	26322525	.	-	.	Parent=Os08t0528800-01
Chr08	irgsp1_rep	CDS	26322075	26322352	.	-	0	Parent=Os08t0528800-01
Chr08	irgsp1_rep	CDS	26319517	26320855	.	-	1	Parent=Os08t0528800-01
Chr08	irgsp1_rep	three_prime_UTR	26319273	26319516	.	-	.	Parent=Os08t0528800-01
Chr08	irgsp1_rep	mRNA	26325005	26328587	.	+	.	ID=Os08t0528900-01;Name=Os08t0528900-01;Locus_id=Os08g0528900;Note=Similar to Transcriptional activator FHA1.;Transcript_evidence=AK103731 (DDBJ%2C Best hit),AK065800 (DDBJ%2C Best hit);ORF_evidence=B6THZ0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Forkhead-associated (FHA) domain (IPR000253),SMAD/FHA domain (IPR008984);NIAS_FLcDNA=J033138E22,J013039B12;Expression=AK103731;TENOR=Os08t0528900-01;KEGG=Os08t0528900-01
Chr08	irgsp1_rep	five_prime_UTR	26325005	26325240	.	+	.	Parent=Os08t0528900-01
Chr08	irgsp1_rep	CDS	26325241	26325904	.	+	0	Parent=Os08t0528900-01
Chr08	irgsp1_rep	CDS	26326628	26326785	.	+	2	Parent=Os08t0528900-01
Chr08	irgsp1_rep	CDS	26328085	26328294	.	+	0	Parent=Os08t0528900-01
Chr08	irgsp1_rep	three_prime_UTR	26328295	26328587	.	+	.	Parent=Os08t0528900-01
Chr08	irgsp1_rep	mRNA	26331939	26335725	.	-	.	ID=Os08t0529000-01;Name=Os08t0529000-01;Locus_id=Os08g0529000;RAP-DB Gene Symbol Synonym(s)=PIN5B%2C PIN5C%2C OsPIN5c%2C OsPIN5b;RAP-DB Gene Name Synonym(s)=PIN PROTEIN 5B%2C PIN PROTEIN 5C;CGSNL Gene Symbol=PIN5B;CGSNL Gene Name=PIN PROTEIN 5B;Oryzabase Gene Symbol Synonym(s)=PIN5C%2C OsPIN5c%2C OsPIN5b%2C PIN4;Oryzabase Gene Name Synonym(s)=PIN PROTEIN 5C%2C PROBABLE AUXIN EFFLUX CARRIER COMPONENT 5C;Note=Auxin efflux carrier%2C Auxin homeostasis%2C transport and distribution;Transcript_evidence=AK100297;ORF_evidence=Q6ZIB5,Q0J484;GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral component of membrane (GO:0016021);InterPro=Auxin efflux carrier (IPR004776),Auxin efflux carrier%2C plant type (IPR014024);NIAS_FLcDNA=J023077B14;Manual Curation=September 1%2C 2015;Literature_PMID=26213119;Oryzabase=8964;Expression=AK100297;TENOR=Os08t0529000-01;KEGG=Os08t0529000-01
Chr08	irgsp1_rep	five_prime_UTR	26335599	26335725	.	-	.	Parent=Os08t0529000-01
Chr08	irgsp1_rep	CDS	26334877	26335598	.	-	0	Parent=Os08t0529000-01
Chr08	irgsp1_rep	CDS	26334675	26334760	.	-	1	Parent=Os08t0529000-01
Chr08	irgsp1_rep	CDS	26334041	26334198	.	-	2	Parent=Os08t0529000-01
Chr08	irgsp1_rep	CDS	26332557	26332633	.	-	0	Parent=Os08t0529000-01
Chr08	irgsp1_rep	CDS	26332323	26332392	.	-	1	Parent=Os08t0529000-01
Chr08	irgsp1_rep	three_prime_UTR	26331939	26332322	.	-	.	Parent=Os08t0529000-01
Chr08	irgsp1_rep	mRNA	26342353	26344538	.	+	.	ID=Os08t0529100-01;Name=Os08t0529100-01;Locus_id=Os08g0529100;Note=Similar to Proteasome subunit beta type 1 (EC 3.4.25.1) (20S proteasome alpha subunit F) (20S proteasome subunit beta-6).;Transcript_evidence=AK071019 (DDBJ%2C Best hit);ORF_evidence=B8B967 (UniProt);GO=Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603),Cellular Component: proteasome core complex (GO:0005839),Molecular Function: endopeptidase activity (GO:0004175),Molecular Function: threonine-type endopeptidase activity (GO:0004298);InterPro=Proteasome%2C subunit alpha/beta (IPR001353),Proteasome%2C beta-type subunit%2C conserved site (IPR016050),Proteasome B-type subunit (IPR023333);NIAS_FLcDNA=J023080M07;Expression=AK071019;TENOR=Os08t0529100-01;KEGG=Os08t0529100-01 (EC:3.4.25.1)
Chr08	irgsp1_rep	five_prime_UTR	26342353	26342547	.	+	.	Parent=Os08t0529100-01
Chr08	irgsp1_rep	CDS	26342548	26342690	.	+	0	Parent=Os08t0529100-01
Chr08	irgsp1_rep	CDS	26343267	26343348	.	+	1	Parent=Os08t0529100-01
Chr08	irgsp1_rep	CDS	26343564	26343693	.	+	0	Parent=Os08t0529100-01
Chr08	irgsp1_rep	CDS	26343791	26343933	.	+	2	Parent=Os08t0529100-01
Chr08	irgsp1_rep	CDS	26344069	26344155	.	+	0	Parent=Os08t0529100-01
Chr08	irgsp1_rep	CDS	26344256	26344330	.	+	0	Parent=Os08t0529100-01
Chr08	irgsp1_rep	three_prime_UTR	26344331	26344538	.	+	.	Parent=Os08t0529100-01
Chr08	irgsp1_rep	mRNA	26344808	26347223	.	-	.	ID=Os08t0529200-00;Name=Os08t0529200-00;Locus_id=Os08g0529200;Note=Cystathionine beta-synthase%2C core domain containing protein.;Transcript_evidence=tplb0004i14 (Wheat FLcDNA);ORF_evidence=NP_001062319.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: heme binding (GO:0020037);InterPro=Cystathionine beta-synthase%2C core (IPR000644),CytoChrome b5%2C heme-binding site (IPR018506);TENOR=Os08t0529200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	26346880	26347223	.	-	0	Parent=Os08t0529200-00
Chr08	irgsp1_rep	CDS	26344870	26345782	.	-	1	Parent=Os08t0529200-00
Chr08	irgsp1_rep	three_prime_UTR	26344808	26344869	.	-	.	Parent=Os08t0529200-00
Chr08	irgsp1_rep	mRNA	26351181	26352296	.	+	.	ID=Os08t0529300-00;Name=Os08t0529300-00;Locus_id=Os08g0529300;Oryzabase Gene Symbol Synonym(s)=OsFbox463%2C Os_F0230;Oryzabase Gene Name Synonym(s)=F-box protein 463;Note=Hypothetical conserved gene.;Transcript_evidence=EU971608 (DDBJ);ORF_evidence=NP_001062320.2 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Galactose oxidase/kelch%2C beta-propeller (IPR011043),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17233;TENOR=Os08t0529300-00;KEGG=Os08t0529300-00
Chr08	irgsp1_rep	CDS	26351181	26352296	.	+	0	Parent=Os08t0529300-00
Chr08	irgsp1_rep	mRNA	26355927	26357323	.	+	.	ID=Os08t0529350-01;Name=Os08t0529350-01;Locus_id=Os08g0529350;Note=Hypothetical gene.;Transcript_evidence=AK243197 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100040D07;TENOR=Os08t0529350-01;KEGG=Os08t0529350-01
Chr08	irgsp1_rep	five_prime_UTR	26355927	26357077	.	+	.	Parent=Os08t0529350-01
Chr08	irgsp1_rep	CDS	26357078	26357323	.	+	0	Parent=Os08t0529350-01
Chr08	irgsp1_rep	mRNA	26356195	26357358	.	-	.	ID=Os08t0529400-00;Name=Os08t0529400-00;Locus_id=Os08g0529400;Oryzabase Gene Symbol Synonym(s)=OsFbox464%2C Os_F0048;Oryzabase Gene Name Synonym(s)=F-box protein 464;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=EU965322 (DDBJ);ORF_evidence=NP_001175664.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17234;TENOR=Os08t0529400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	26356195	26357358	.	-	0	Parent=Os08t0529400-00
Chr08	irgsp1_rep	mRNA	26367629	26369271	.	+	.	ID=Os08t0529501-01;Name=Os08t0529501-01;Locus_id=Os08g0529501;Note=Integrin alpha chain%2C C-terminal cytoplasmic region%2C conserved site domain containing protein.;Transcript_evidence=AK288350 (DDBJ%2C Best hit);ORF_evidence=NP_001175665.1 (RefSeq);NIAS_FLcDNA=J090024A21;TENOR=Os08t0529501-01;KEGG=Os08t0529501-01
Chr08	irgsp1_rep	five_prime_UTR	26367629	26368696	.	+	.	Parent=Os08t0529501-01
Chr08	irgsp1_rep	CDS	26368697	26368957	.	+	0	Parent=Os08t0529501-01
Chr08	irgsp1_rep	three_prime_UTR	26368958	26369271	.	+	.	Parent=Os08t0529501-01
Chr08	irgsp1_rep	mRNA	26379625	26384641	.	-	.	ID=Os08t0529800-01;Name=Os08t0529800-01;Locus_id=Os08g0529800;Note=Alpha/beta hydrolase fold-1 domain containing protein.;Transcript_evidence=AK107138 (DDBJ%2C Best hit);ORF_evidence=Q1XBG1 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629);InterPro=Alpha/beta hydrolase fold-1 (IPR000073),Partial AB-hydrolase lipase domain (IPR006693);NIAS_FLcDNA=002-124-C12;Expression=AK107138;TENOR=Os08t0529800-01;KEGG=Os08t0529800-01
Chr08	irgsp1_rep	five_prime_UTR	26384560	26384641	.	-	.	Parent=Os08t0529800-01
Chr08	irgsp1_rep	CDS	26384314	26384559	.	-	0	Parent=Os08t0529800-01
Chr08	irgsp1_rep	CDS	26384081	26384206	.	-	0	Parent=Os08t0529800-01
Chr08	irgsp1_rep	CDS	26381407	26381547	.	-	0	Parent=Os08t0529800-01
Chr08	irgsp1_rep	CDS	26381051	26381161	.	-	0	Parent=Os08t0529800-01
Chr08	irgsp1_rep	CDS	26380788	26380931	.	-	0	Parent=Os08t0529800-01
Chr08	irgsp1_rep	CDS	26380619	26380662	.	-	0	Parent=Os08t0529800-01
Chr08	irgsp1_rep	CDS	26380425	26380504	.	-	1	Parent=Os08t0529800-01
Chr08	irgsp1_rep	CDS	26380237	26380332	.	-	2	Parent=Os08t0529800-01
Chr08	irgsp1_rep	CDS	26379801	26380129	.	-	2	Parent=Os08t0529800-01
Chr08	irgsp1_rep	three_prime_UTR	26379625	26379800	.	-	.	Parent=Os08t0529800-01
Chr08	irgsp1_rep	mRNA	26379820	26384400	.	+	.	ID=Os08t0529901-00;Name=Os08t0529901-00;Locus_id=Os08g0529901;Note=Hypothetical gene.;Transcript_evidence=BT016872 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0529901-00;KEGG=Os08t0529901-00
Chr08	irgsp1_rep	five_prime_UTR	26379820	26379821	.	+	.	Parent=Os08t0529901-00
Chr08	irgsp1_rep	CDS	26379822	26380118	.	+	0	Parent=Os08t0529901-00
Chr08	irgsp1_rep	CDS	26380221	26380241	.	+	0	Parent=Os08t0529901-00
Chr08	irgsp1_rep	three_prime_UTR	26380242	26380339	.	+	.	Parent=Os08t0529901-00
Chr08	irgsp1_rep	three_prime_UTR	26380434	26380534	.	+	.	Parent=Os08t0529901-00
Chr08	irgsp1_rep	three_prime_UTR	26380775	26380926	.	+	.	Parent=Os08t0529901-00
Chr08	irgsp1_rep	three_prime_UTR	26381044	26381155	.	+	.	Parent=Os08t0529901-00
Chr08	irgsp1_rep	three_prime_UTR	26381400	26381536	.	+	.	Parent=Os08t0529901-00
Chr08	irgsp1_rep	three_prime_UTR	26384049	26384198	.	+	.	Parent=Os08t0529901-00
Chr08	irgsp1_rep	three_prime_UTR	26384304	26384400	.	+	.	Parent=Os08t0529901-00
Chr08	irgsp1_rep	mRNA	26389739	26395118	.	+	.	ID=Os08t0530000-01;Name=Os08t0530000-01;Locus_id=Os08g0530000;Note=Similar to Uridine kinase-like protein.;Transcript_evidence=AK065712 (DDBJ%2C Best hit);ORF_evidence=B8B969 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: ATP binding (GO:0005524),Molecular Function: kinase activity (GO:0016301),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Uridine kinase (IPR000764),Phosphoribulokinase/uridine kinase (IPR006083);NIAS_FLcDNA=J013043M04;Expression=AK065712;TENOR=Os08t0530000-01;KEGG=Os08t0530000-01 (EC:2.7.1.48)
Chr08	irgsp1_rep	five_prime_UTR	26389739	26389834	.	+	.	Parent=Os08t0530000-01
Chr08	irgsp1_rep	CDS	26389835	26390057	.	+	0	Parent=Os08t0530000-01
Chr08	irgsp1_rep	CDS	26390149	26390240	.	+	2	Parent=Os08t0530000-01
Chr08	irgsp1_rep	CDS	26390964	26391033	.	+	0	Parent=Os08t0530000-01
Chr08	irgsp1_rep	CDS	26391137	26391255	.	+	2	Parent=Os08t0530000-01
Chr08	irgsp1_rep	CDS	26391822	26391918	.	+	0	Parent=Os08t0530000-01
Chr08	irgsp1_rep	CDS	26392023	26392102	.	+	2	Parent=Os08t0530000-01
Chr08	irgsp1_rep	CDS	26392228	26392422	.	+	0	Parent=Os08t0530000-01
Chr08	irgsp1_rep	CDS	26392506	26392589	.	+	0	Parent=Os08t0530000-01
Chr08	irgsp1_rep	CDS	26392702	26392762	.	+	0	Parent=Os08t0530000-01
Chr08	irgsp1_rep	CDS	26393650	26393710	.	+	2	Parent=Os08t0530000-01
Chr08	irgsp1_rep	CDS	26394142	26394235	.	+	1	Parent=Os08t0530000-01
Chr08	irgsp1_rep	CDS	26394327	26394399	.	+	0	Parent=Os08t0530000-01
Chr08	irgsp1_rep	CDS	26394513	26394595	.	+	2	Parent=Os08t0530000-01
Chr08	irgsp1_rep	CDS	26394686	26394829	.	+	0	Parent=Os08t0530000-01
Chr08	irgsp1_rep	three_prime_UTR	26394830	26395118	.	+	.	Parent=Os08t0530000-01
Chr08	irgsp1_rep	mRNA	26391820	26394870	.	-	.	ID=Os08t0530033-00;Name=Os08t0530033-00;Locus_id=Os08g0530033;Note=Hypothetical protein.;Transcript_evidence=tplb0046c01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0530033-00
Chr08	irgsp1_rep	five_prime_UTR	26394684	26394870	.	-	.	Parent=Os08t0530033-00
Chr08	irgsp1_rep	five_prime_UTR	26394336	26394477	.	-	.	Parent=Os08t0530033-00
Chr08	irgsp1_rep	five_prime_UTR	26394069	26394243	.	-	.	Parent=Os08t0530033-00
Chr08	irgsp1_rep	five_prime_UTR	26392495	26392638	.	-	.	Parent=Os08t0530033-00
Chr08	irgsp1_rep	five_prime_UTR	26392329	26392414	.	-	.	Parent=Os08t0530033-00
Chr08	irgsp1_rep	CDS	26392213	26392328	.	-	0	Parent=Os08t0530033-00
Chr08	irgsp1_rep	CDS	26392038	26392093	.	-	1	Parent=Os08t0530033-00
Chr08	irgsp1_rep	CDS	26391841	26391929	.	-	2	Parent=Os08t0530033-00
Chr08	irgsp1_rep	three_prime_UTR	26391820	26391840	.	-	.	Parent=Os08t0530033-00
Chr08	irgsp1_rep	mRNA	26398359	26399875	.	+	.	ID=Os08t0530066-00;Name=Os08t0530066-00;Locus_id=Os08g0530066;Note=Nucleotide-diphospho-sugar transferase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G1Y0 (UniProt);InterPro=Nucleotide-diphospho-sugar transferase (IPR005069);TENOR=Os08t0530066-00
Chr08	irgsp1_rep	CDS	26398359	26398529	.	+	0	Parent=Os08t0530066-00
Chr08	irgsp1_rep	CDS	26399498	26399875	.	+	0	Parent=Os08t0530066-00
Chr08	irgsp1_rep	mRNA	26400722	26401482	.	+	.	ID=Os08t0530100-01;Name=Os08t0530100-01;Locus_id=Os08g0530100;Note=Nucleotide-diphospho-sugar transferase domain containing protein.;Transcript_evidence=AK066822 (DDBJ%2C Best hit);ORF_evidence=Q6ZIA2 (UniProt);InterPro=Nucleotide-diphospho-sugar transferase (IPR005069);NIAS_FLcDNA=J013077F20;Expression=AK066822;TENOR=Os08t0530100-01;KEGG=Os08t0530100-01
Chr08	irgsp1_rep	CDS	26400722	26401102	.	+	0	Parent=Os08t0530100-01
Chr08	irgsp1_rep	three_prime_UTR	26401103	26401482	.	+	.	Parent=Os08t0530100-01
Chr08	irgsp1_rep	mRNA	26406032	26408527	.	-	.	ID=Os08t0530200-01;Name=Os08t0530200-01;Locus_id=Os08g0530200;Note=Similar to 60S ribosomal protein L17.;Transcript_evidence=AK120448 (DDBJ%2C Best hit);ORF_evidence=NP_001104890.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: large ribosomal subunit (GO:0015934),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L22/L17 (IPR001063),Ribosomal protein L22/L17%2C eukaryotic/archaeal (IPR005721),Ribosomal protein L22/L17%2C conserved site (IPR018260);NIAS_FLcDNA=J013100M19;Expression=AK120448;TENOR=Os08t0530200-01;KEGG=Os08t0530200-01
Chr08	irgsp1_rep	five_prime_UTR	26408403	26408527	.	-	.	Parent=Os08t0530200-01
Chr08	irgsp1_rep	CDS	26408400	26408402	.	-	0	Parent=Os08t0530200-01
Chr08	irgsp1_rep	CDS	26408270	26408306	.	-	0	Parent=Os08t0530200-01
Chr08	irgsp1_rep	CDS	26408133	26408173	.	-	2	Parent=Os08t0530200-01
Chr08	irgsp1_rep	CDS	26406900	26407130	.	-	0	Parent=Os08t0530200-01
Chr08	irgsp1_rep	CDS	26406700	26406802	.	-	0	Parent=Os08t0530200-01
Chr08	irgsp1_rep	CDS	26406562	26406629	.	-	2	Parent=Os08t0530200-01
Chr08	irgsp1_rep	CDS	26406229	26406261	.	-	0	Parent=Os08t0530200-01
Chr08	irgsp1_rep	three_prime_UTR	26406032	26406228	.	-	.	Parent=Os08t0530200-01
Chr08	irgsp1_rep	mRNA	26406059	26408471	.	-	.	ID=Os08t0530200-02;Name=Os08t0530200-02;Locus_id=Os08g0530200;Note=Similar to 60S ribosomal protein L17.;Transcript_evidence=AK062052 (DDBJ%2C Best hit);ORF_evidence=NP_001104890.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: large ribosomal subunit (GO:0015934),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L22/L17 (IPR001063),Ribosomal protein L22/L17%2C eukaryotic/archaeal (IPR005721),Ribosomal protein L22/L17%2C conserved site (IPR018260);NIAS_FLcDNA=001-044-B07;Expression=AK062052;TENOR=Os08t0530200-02;KEGG=Os08t0530200-02
Chr08	irgsp1_rep	five_prime_UTR	26408403	26408471	.	-	.	Parent=Os08t0530200-02
Chr08	irgsp1_rep	CDS	26408400	26408402	.	-	0	Parent=Os08t0530200-02
Chr08	irgsp1_rep	CDS	26408270	26408306	.	-	0	Parent=Os08t0530200-02
Chr08	irgsp1_rep	CDS	26408133	26408173	.	-	2	Parent=Os08t0530200-02
Chr08	irgsp1_rep	CDS	26406900	26407130	.	-	0	Parent=Os08t0530200-02
Chr08	irgsp1_rep	CDS	26406700	26406802	.	-	0	Parent=Os08t0530200-02
Chr08	irgsp1_rep	CDS	26406562	26406629	.	-	2	Parent=Os08t0530200-02
Chr08	irgsp1_rep	CDS	26406229	26406261	.	-	0	Parent=Os08t0530200-02
Chr08	irgsp1_rep	three_prime_UTR	26406059	26406228	.	-	.	Parent=Os08t0530200-02
Chr08	irgsp1_rep	mRNA	26413741	26416008	.	+	.	ID=Os08t0530300-01;Name=Os08t0530300-01;Locus_id=Os08g0530300;CGSNL Gene Symbol=EXO70F4;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN F4;Oryzabase Gene Symbol Synonym(s)=OsEXO70F4%2C OsExo70F4%2C OrysaF4_Exo70;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein F4;Note=Exo70 exocyst complex subunit family protein.;Transcript_evidence=AK243160 (DDBJ%2C Best hit);ORF_evidence=NP_001062325.1 (RefSeq);GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exo70 exocyst complex subunit (IPR004140),Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=J100034H18;Oryzabase=20334;TENOR=Os08t0530300-01;KEGG=Os08t0530300-01
Chr08	irgsp1_rep	five_prime_UTR	26413741	26413951	.	+	.	Parent=Os08t0530300-01
Chr08	irgsp1_rep	CDS	26413952	26415772	.	+	0	Parent=Os08t0530300-01
Chr08	irgsp1_rep	three_prime_UTR	26415773	26416008	.	+	.	Parent=Os08t0530300-01
Chr08	irgsp1_rep	mRNA	26417799	26422222	.	+	.	ID=Os08t0530400-01;Name=Os08t0530400-01;Locus_id=Os08g0530400;Oryzabase Gene Symbol Synonym(s)=OsMCP%2C MCP%2C OsSO1%2C SO1;Oryzabase Gene Name Synonym(s)=Moco containing protein%2C sulfite oxidase 1;Note=Moco containing protein (Moco containing protein(OsMCP)).;Transcript_evidence=AK068532 (DDBJ%2C Best hit);ORF_evidence=C5HG86 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: molybdenum ion binding (GO:0030151),Molecular Function: metal ion binding (GO:0046872);InterPro=Oxidoreductase%2C molybdopterin-binding domain (IPR000572),Moybdenum cofactor oxidoreductase%2C dimerisation (IPR005066),Eukaryotic molybdopterin oxidoreductase (IPR008335),Immunoglobulin E-set (IPR014756);NIAS_FLcDNA=J013155E12;Oryzabase=13919;Expression=AK068532;TENOR=Os08t0530400-01;KEGG=Os08t0530400-01 (EC:1.8.3.1)
Chr08	irgsp1_rep	five_prime_UTR	26417799	26417847	.	+	.	Parent=Os08t0530400-01
Chr08	irgsp1_rep	CDS	26417848	26417922	.	+	0	Parent=Os08t0530400-01
Chr08	irgsp1_rep	CDS	26418970	26419085	.	+	0	Parent=Os08t0530400-01
Chr08	irgsp1_rep	CDS	26419169	26419231	.	+	1	Parent=Os08t0530400-01
Chr08	irgsp1_rep	CDS	26419309	26419345	.	+	1	Parent=Os08t0530400-01
Chr08	irgsp1_rep	CDS	26419435	26419516	.	+	0	Parent=Os08t0530400-01
Chr08	irgsp1_rep	CDS	26419989	26420107	.	+	2	Parent=Os08t0530400-01
Chr08	irgsp1_rep	CDS	26420184	26420279	.	+	0	Parent=Os08t0530400-01
Chr08	irgsp1_rep	CDS	26420851	26420961	.	+	0	Parent=Os08t0530400-01
Chr08	irgsp1_rep	CDS	26421034	26421135	.	+	0	Parent=Os08t0530400-01
Chr08	irgsp1_rep	CDS	26421295	26421342	.	+	0	Parent=Os08t0530400-01
Chr08	irgsp1_rep	CDS	26421472	26421687	.	+	0	Parent=Os08t0530400-01
Chr08	irgsp1_rep	CDS	26421789	26421917	.	+	0	Parent=Os08t0530400-01
Chr08	irgsp1_rep	three_prime_UTR	26421918	26422222	.	+	.	Parent=Os08t0530400-01
Chr08	irgsp1_rep	mRNA	26421048	26422214	.	+	.	ID=Os08t0530400-02;Name=Os08t0530400-02;Locus_id=Os08g0530400;Oryzabase Gene Symbol Synonym(s)=OsMCP%2C MCP%2C OsSO1%2C SO1;Oryzabase Gene Name Synonym(s)=Moco containing protein%2C sulfite oxidase 1;Note=Similar to sulfite oxidase.;Transcript_evidence=AK104910 (DDBJ%2C Best hit);ORF_evidence=C5HG86 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: molybdenum ion binding (GO:0030151),Molecular Function: metal ion binding (GO:0046872);InterPro=Moybdenum cofactor oxidoreductase%2C dimerisation (IPR005066),Eukaryotic molybdopterin oxidoreductase (IPR008335),Immunoglobulin E-set (IPR014756);NIAS_FLcDNA=001-047-A02;Oryzabase=13919;Expression=AK104910;TENOR=Os08t0530400-02;KEGG=Os08t0530400-02 (EC:1.8.3.1)
Chr08	irgsp1_rep	five_prime_UTR	26421048	26421048	.	+	.	Parent=Os08t0530400-02
Chr08	irgsp1_rep	CDS	26421049	26421135	.	+	0	Parent=Os08t0530400-02
Chr08	irgsp1_rep	CDS	26421295	26421342	.	+	0	Parent=Os08t0530400-02
Chr08	irgsp1_rep	CDS	26421472	26421687	.	+	0	Parent=Os08t0530400-02
Chr08	irgsp1_rep	CDS	26421789	26421917	.	+	0	Parent=Os08t0530400-02
Chr08	irgsp1_rep	three_prime_UTR	26421918	26422214	.	+	.	Parent=Os08t0530400-02
Chr08	irgsp1_rep	mRNA	26422252	26423999	.	-	.	ID=Os08t0530500-01;Name=Os08t0530500-01;Locus_id=Os08g0530500;Note=Conserved hypothetical protein.;Transcript_evidence=AK243172 (DDBJ%2C Best hit);ORF_evidence=Q6ZI97 (UniProt);NIAS_FLcDNA=J100035M13;TENOR=Os08t0530500-01;KEGG=Os08t0530500-01
Chr08	irgsp1_rep	five_prime_UTR	26423981	26423999	.	-	.	Parent=Os08t0530500-01
Chr08	irgsp1_rep	CDS	26423777	26423980	.	-	0	Parent=Os08t0530500-01
Chr08	irgsp1_rep	CDS	26423515	26423685	.	-	0	Parent=Os08t0530500-01
Chr08	irgsp1_rep	CDS	26422981	26423067	.	-	0	Parent=Os08t0530500-01
Chr08	irgsp1_rep	CDS	26422641	26422760	.	-	0	Parent=Os08t0530500-01
Chr08	irgsp1_rep	CDS	26422520	26422561	.	-	0	Parent=Os08t0530500-01
Chr08	irgsp1_rep	three_prime_UTR	26422252	26422519	.	-	.	Parent=Os08t0530500-01
Chr08	irgsp1_rep	mRNA	26430721	26433033	.	-	.	ID=Os08t0530600-01;Name=Os08t0530600-01;Locus_id=Os08g0530600;Note=Similar to Ubiquitin carrier protein.;Transcript_evidence=AK064897 (DDBJ%2C Best hit);ORF_evidence=C5XGY6 (UniProt);NIAS_FLcDNA=J013000L10;TENOR=Os08t0530600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	26431157	26433033	.	-	.	Parent=Os08t0530600-01
Chr08	irgsp1_rep	CDS	26430998	26431156	.	-	0	Parent=Os08t0530600-01
Chr08	irgsp1_rep	three_prime_UTR	26430721	26430997	.	-	.	Parent=Os08t0530600-01
Chr08	irgsp1_rep	mRNA	26434718	26445150	.	-	.	ID=Os08t0530801-00;Name=Os08t0530801-00;Locus_id=Os08g0530801;Note=Hypothetical protein.;Transcript_evidence=tplb0025g01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0530801-00
Chr08	irgsp1_rep	five_prime_UTR	26445150	26445150	.	-	.	Parent=Os08t0530801-00
Chr08	irgsp1_rep	CDS	26444532	26445149	.	-	0	Parent=Os08t0530801-00
Chr08	irgsp1_rep	CDS	26443971	26443997	.	-	0	Parent=Os08t0530801-00
Chr08	irgsp1_rep	three_prime_UTR	26443882	26443970	.	-	.	Parent=Os08t0530801-00
Chr08	irgsp1_rep	three_prime_UTR	26443572	26443787	.	-	.	Parent=Os08t0530801-00
Chr08	irgsp1_rep	three_prime_UTR	26443227	26443357	.	-	.	Parent=Os08t0530801-00
Chr08	irgsp1_rep	three_prime_UTR	26442766	26442848	.	-	.	Parent=Os08t0530801-00
Chr08	irgsp1_rep	three_prime_UTR	26442034	26442264	.	-	.	Parent=Os08t0530801-00
Chr08	irgsp1_rep	three_prime_UTR	26441779	26441880	.	-	.	Parent=Os08t0530801-00
Chr08	irgsp1_rep	three_prime_UTR	26441579	26441665	.	-	.	Parent=Os08t0530801-00
Chr08	irgsp1_rep	three_prime_UTR	26441261	26441404	.	-	.	Parent=Os08t0530801-00
Chr08	irgsp1_rep	three_prime_UTR	26434718	26434883	.	-	.	Parent=Os08t0530801-00
Chr08	irgsp1_rep	mRNA	26439631	26445473	.	+	.	ID=Os08t0531000-01;Name=Os08t0531000-01;Locus_id=Os08g0531000;RAP-DB Gene Symbol Synonym(s)=NPP1%2C OsNPP1%2C OsPAP27b%2C PAP27B;RAP-DB Gene Name Synonym(s)=NUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE 1%2C Nucleotide Pyrophosphatase/Phosphodiesterase 1%2C Purple acid phosphatase 27b;CGSNL Gene Symbol=NPP1;CGSNL Gene Name=NUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE 1;Oryzabase Gene Symbol Synonym(s)=OsNPP1%2C OsPAP27b%2C PAP27B;Oryzabase Gene Name Synonym(s)=Nucleotide Pyrophosphatase/Phosphodiesterase 1%2C Purple acid phosphatase 27b;Note=Nucleotide pyrophosphatase/phosphodiesterase%2C Negative effect on plant growth and starch accumulation;Transcript_evidence=AB100451,AK072408;ORF_evidence=Q6ZI95;GO=Molecular Function: acid phosphatase activity (GO:0003993),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: metal ion binding (GO:0046872);InterPro=Purple acid phosphatase-like%2C N-terminal (IPR008963),Purple acid phosphatase%2C N-terminal (IPR015914),Metallo-dependent phosphatase-like (IPR029052),Calcineurin-like phosphoesterase domain%2C apaH type (IPR004843),Iron/zinc purple acid phosphatase-like C-terminal domain (IPR025733);NIAS_FLcDNA=J023083H19;Manual Curation=November 20%2C 2014;Literature_PMID=24092883;Oryzabase=7373;TENOR=Os08t0531000-01;KEGG=Os08t0531000-01
Chr08	irgsp1_rep	five_prime_UTR	26439631	26439666	.	+	.	Parent=Os08t0531000-01
Chr08	irgsp1_rep	CDS	26439667	26439864	.	+	0	Parent=Os08t0531000-01
Chr08	irgsp1_rep	CDS	26441313	26441404	.	+	0	Parent=Os08t0531000-01
Chr08	irgsp1_rep	CDS	26441579	26441645	.	+	1	Parent=Os08t0531000-01
Chr08	irgsp1_rep	CDS	26441761	26441880	.	+	0	Parent=Os08t0531000-01
Chr08	irgsp1_rep	CDS	26442034	26442265	.	+	0	Parent=Os08t0531000-01
Chr08	irgsp1_rep	CDS	26442767	26442848	.	+	2	Parent=Os08t0531000-01
Chr08	irgsp1_rep	CDS	26443227	26443359	.	+	1	Parent=Os08t0531000-01
Chr08	irgsp1_rep	CDS	26443574	26443779	.	+	0	Parent=Os08t0531000-01
Chr08	irgsp1_rep	CDS	26443875	26444000	.	+	1	Parent=Os08t0531000-01
Chr08	irgsp1_rep	CDS	26444534	26445149	.	+	1	Parent=Os08t0531000-01
Chr08	irgsp1_rep	three_prime_UTR	26445150	26445473	.	+	.	Parent=Os08t0531000-01
Chr08	irgsp1_rep	mRNA	26443227	26445423	.	+	.	ID=Os08t0531000-02;Name=Os08t0531000-02;Locus_id=Os08g0531000;CGSNL Gene Symbol=NPP1;CGSNL Gene Name=NUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE 1;Oryzabase Gene Symbol Synonym(s)=OsNPP1%2C OsPAP27b%2C PAP27B;Oryzabase Gene Name Synonym(s)=Nucleotide Pyrophosphatase/Phosphodiesterase 1%2C Purple acid phosphatase 27b;Note=Similar to Nucleotide pyrophosphatase/phosphodiesterase (Fragments).;Transcript_evidence=AK061879 (DDBJ%2C Best hit);ORF_evidence=Q687E1 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Metallophosphoesterase domain (IPR004843);NIAS_FLcDNA=001-041-E10;Oryzabase=7373;TENOR=Os08t0531000-02;KEGG=Os08t0531000-02
Chr08	irgsp1_rep	five_prime_UTR	26443227	26443227	.	+	.	Parent=Os08t0531000-02
Chr08	irgsp1_rep	CDS	26443228	26443359	.	+	0	Parent=Os08t0531000-02
Chr08	irgsp1_rep	CDS	26443574	26443779	.	+	0	Parent=Os08t0531000-02
Chr08	irgsp1_rep	CDS	26443875	26444000	.	+	1	Parent=Os08t0531000-02
Chr08	irgsp1_rep	CDS	26444534	26445149	.	+	1	Parent=Os08t0531000-02
Chr08	irgsp1_rep	three_prime_UTR	26445150	26445423	.	+	.	Parent=Os08t0531000-02
Chr08	irgsp1_rep	mRNA	26448418	26452961	.	+	.	ID=Os08t0531100-01;Name=Os08t0531100-01;Locus_id=Os08g0531100;Oryzabase Gene Name Synonym(s)=MAP65/ASE family protein;Note=MAP65/ASE1 family protein.;Transcript_evidence=AK067790 (DDBJ%2C Best hit);ORF_evidence=B9G1Y5 (UniProt);InterPro=Microtubule-associated protein%2C MAP65/ASE1-type (IPR007145);NIAS_FLcDNA=J013119G06;Oryzabase=16709;Expression=AK067790;TENOR=Os08t0531100-01;KEGG=Os08t0531100-01
Chr08	irgsp1_rep	five_prime_UTR	26448418	26448537	.	+	.	Parent=Os08t0531100-01
Chr08	irgsp1_rep	CDS	26448538	26448621	.	+	0	Parent=Os08t0531100-01
Chr08	irgsp1_rep	CDS	26448710	26448913	.	+	0	Parent=Os08t0531100-01
Chr08	irgsp1_rep	CDS	26448997	26449242	.	+	0	Parent=Os08t0531100-01
Chr08	irgsp1_rep	CDS	26449339	26449557	.	+	0	Parent=Os08t0531100-01
Chr08	irgsp1_rep	CDS	26449895	26450050	.	+	0	Parent=Os08t0531100-01
Chr08	irgsp1_rep	CDS	26450135	26450294	.	+	0	Parent=Os08t0531100-01
Chr08	irgsp1_rep	CDS	26450390	26450541	.	+	2	Parent=Os08t0531100-01
Chr08	irgsp1_rep	CDS	26450617	26450704	.	+	0	Parent=Os08t0531100-01
Chr08	irgsp1_rep	CDS	26450775	26450849	.	+	2	Parent=Os08t0531100-01
Chr08	irgsp1_rep	CDS	26452194	26452268	.	+	2	Parent=Os08t0531100-01
Chr08	irgsp1_rep	CDS	26452349	26452356	.	+	2	Parent=Os08t0531100-01
Chr08	irgsp1_rep	three_prime_UTR	26452357	26452961	.	+	.	Parent=Os08t0531100-01
Chr08	irgsp1_rep	mRNA	26452131	26462511	.	-	.	ID=Os08t0531200-01;Name=Os08t0531200-01;Locus_id=Os08g0531200;Oryzabase Gene Symbol Synonym(s)=OsWD40-163;Note=WD40 repeat domain containing protein.;Transcript_evidence=AK120362 (DDBJ%2C Best hit);ORF_evidence=Q6ZJ65 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J013067O11;Oryzabase=10844;TENOR=Os08t0531200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	26462463	26462511	.	-	.	Parent=Os08t0531200-01
Chr08	irgsp1_rep	CDS	26462076	26462462	.	-	0	Parent=Os08t0531200-01
Chr08	irgsp1_rep	CDS	26461290	26461538	.	-	0	Parent=Os08t0531200-01
Chr08	irgsp1_rep	CDS	26459875	26459980	.	-	0	Parent=Os08t0531200-01
Chr08	irgsp1_rep	CDS	26459689	26459785	.	-	2	Parent=Os08t0531200-01
Chr08	irgsp1_rep	CDS	26459326	26459597	.	-	1	Parent=Os08t0531200-01
Chr08	irgsp1_rep	CDS	26458793	26459014	.	-	2	Parent=Os08t0531200-01
Chr08	irgsp1_rep	CDS	26458381	26458508	.	-	2	Parent=Os08t0531200-01
Chr08	irgsp1_rep	CDS	26457655	26457729	.	-	0	Parent=Os08t0531200-01
Chr08	irgsp1_rep	CDS	26457377	26457448	.	-	0	Parent=Os08t0531200-01
Chr08	irgsp1_rep	CDS	26456879	26456944	.	-	0	Parent=Os08t0531200-01
Chr08	irgsp1_rep	CDS	26456666	26456777	.	-	0	Parent=Os08t0531200-01
Chr08	irgsp1_rep	CDS	26456037	26456133	.	-	2	Parent=Os08t0531200-01
Chr08	irgsp1_rep	CDS	26455042	26455201	.	-	1	Parent=Os08t0531200-01
Chr08	irgsp1_rep	CDS	26454914	26454962	.	-	0	Parent=Os08t0531200-01
Chr08	irgsp1_rep	CDS	26454743	26454825	.	-	2	Parent=Os08t0531200-01
Chr08	irgsp1_rep	CDS	26453962	26454170	.	-	0	Parent=Os08t0531200-01
Chr08	irgsp1_rep	CDS	26453685	26453771	.	-	1	Parent=Os08t0531200-01
Chr08	irgsp1_rep	CDS	26453516	26453591	.	-	1	Parent=Os08t0531200-01
Chr08	irgsp1_rep	CDS	26453378	26453434	.	-	0	Parent=Os08t0531200-01
Chr08	irgsp1_rep	CDS	26452980	26453054	.	-	0	Parent=Os08t0531200-01
Chr08	irgsp1_rep	three_prime_UTR	26452952	26452979	.	-	.	Parent=Os08t0531200-01
Chr08	irgsp1_rep	three_prime_UTR	26452131	26452529	.	-	.	Parent=Os08t0531200-01
Chr08	irgsp1_rep	mRNA	26464493	26467773	.	+	.	ID=Os08t0531300-01;Name=Os08t0531300-01;Locus_id=Os08g0531300;Note=DHBP synthase RibB-like alpha/beta domain domain containing protein.;Transcript_evidence=AK067106 (DDBJ%2C Best hit);ORF_evidence=NP_566156.2 (RefSeq);InterPro=Sua5/YciO/YrdC/YwlC (IPR004388),Sua5/YciO/YrdC%2C N-terminal (IPR006070),DHBP synthase RibB-like alpha/beta domain (IPR017945);NIAS_FLcDNA=J013098L20;Expression=AK067106;TENOR=Os08t0531300-01;KEGG=Os08t0531300-01
Chr08	irgsp1_rep	five_prime_UTR	26464493	26464517	.	+	.	Parent=Os08t0531300-01
Chr08	irgsp1_rep	CDS	26464518	26464724	.	+	0	Parent=Os08t0531300-01
Chr08	irgsp1_rep	CDS	26464842	26464963	.	+	0	Parent=Os08t0531300-01
Chr08	irgsp1_rep	CDS	26465482	26465535	.	+	1	Parent=Os08t0531300-01
Chr08	irgsp1_rep	CDS	26465632	26465654	.	+	1	Parent=Os08t0531300-01
Chr08	irgsp1_rep	CDS	26465785	26465909	.	+	2	Parent=Os08t0531300-01
Chr08	irgsp1_rep	CDS	26465988	26466151	.	+	0	Parent=Os08t0531300-01
Chr08	irgsp1_rep	CDS	26466522	26466591	.	+	1	Parent=Os08t0531300-01
Chr08	irgsp1_rep	CDS	26467139	26467237	.	+	0	Parent=Os08t0531300-01
Chr08	irgsp1_rep	CDS	26467519	26467596	.	+	0	Parent=Os08t0531300-01
Chr08	irgsp1_rep	three_prime_UTR	26467597	26467773	.	+	.	Parent=Os08t0531300-01
Chr08	irgsp1_rep	mRNA	26466152	26467785	.	+	.	ID=Os08t0531300-02;Name=Os08t0531300-02;Locus_id=Os08g0531300;Note=Similar to yrdC family protein.;Transcript_evidence=AK071204 (DDBJ%2C Best hit);ORF_evidence=XP_002884252.1 (RefSeq);InterPro=DHBP synthase RibB-like alpha/beta domain (IPR017945);NIAS_FLcDNA=J023086N12;Expression=AK071204;TENOR=Os08t0531300-02;KEGG=Os08t0531300-02
Chr08	irgsp1_rep	five_prime_UTR	26466152	26467126	.	+	.	Parent=Os08t0531300-02
Chr08	irgsp1_rep	CDS	26467127	26467423	.	+	0	Parent=Os08t0531300-02
Chr08	irgsp1_rep	three_prime_UTR	26467424	26467785	.	+	.	Parent=Os08t0531300-02
Chr08	irgsp1_rep	mRNA	26501167	26506198	.	+	.	ID=Os08t0531600-01;Name=Os08t0531600-01;Locus_id=Os08g0531600;RAP-DB Gene Symbol Synonym(s)=GW8%2C SPL16%2C OsSPL16%2C SLP1%2C qGW8;RAP-DB Gene Name Synonym(s)=GRAIN-WIDTH 8%2C Squamosa promoter-binding-like protein 16%2C SQUAMOSA promoter-binding-like 16%2C stunted lemma palea 1%2C grain-width 8;CGSNL Gene Symbol=GW8;CGSNL Gene Name=GRAIN-WIDTH 8;Oryzabase Gene Symbol Synonym(s)=SPL16%2C OsSPL16%2C SLP1%2C qGW8;Oryzabase Gene Name Synonym(s)=Squamosa promoter-binding-like protein 16%2C SQUAMOSA promoter-binding-like 16%2C stunted lemma palea 1%2C grain-width 8;Note=Transcription factor%2C Positive regulator of cell proliferation%2C Control of grain size%2C shape and quality;Transcript_evidence=AK109469;ORF_evidence=Q6YZE8;GO=Molecular Function: DNA binding (GO:0003677),Cellular Component: nucleus (GO:0005634);InterPro=Transcription factor%2C SBP-box (IPR004333);NIAS_FLcDNA=001-128-D02;Manual Curation=February 19%2C 2015;Literature_PMID=22729225,16861571;Oryzabase=6900;TENOR=Os08t0531600-01;KEGG=Os08t0531600-01
Chr08	irgsp1_rep	five_prime_UTR	26501167	26501222	.	+	.	Parent=Os08t0531600-01
Chr08	irgsp1_rep	CDS	26501223	26501713	.	+	0	Parent=Os08t0531600-01
Chr08	irgsp1_rep	CDS	26504616	26504746	.	+	1	Parent=Os08t0531600-01
Chr08	irgsp1_rep	CDS	26505189	26505934	.	+	2	Parent=Os08t0531600-01
Chr08	irgsp1_rep	three_prime_UTR	26505935	26506198	.	+	.	Parent=Os08t0531600-01
Chr08	irgsp1_rep	mRNA	26507926	26512261	.	+	.	ID=Os08t0531700-01;Name=Os08t0531700-01;Locus_id=Os08g0531700;RAP-DB Gene Symbol Synonym(s)=OsMADS7;RAP-DB Gene Name Synonym(s)=MADS-box transcription factor 7;CGSNL Gene Symbol=MADS7;CGSNL Gene Name=MADS BOX GENE 7;Oryzabase Gene Symbol Synonym(s)=OsMADS7%2C OsMADS45%2C FDRMADS1%2C RMADS216%2C AGL6%2C M79%2C MADS45%2C Os MADS7%2C Os MADS45%2C OsMADS7/45;Oryzabase Gene Name Synonym(s)=MADS box gene7%2C Protein AGAMOUS-like 6%2C MADS-box protein 45%2C MADS box gene45%2C MADS-box transcription factor 7%2C Protein AGAMOUS-like 6;Note=MADS-box transcription factor%2C Regulation of floral identity%2C Regulation of amylose content at high temperature;Transcript_evidence=AK100263;ORF_evidence=Q0J466;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Biological Process: positive regulation of transcription by RNA polymerase II (GO:0045944),Molecular Function: RNA polymerase II regulatory region sequence-specific DNA binding (GO:0000977),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-binding transcription factor activity (GO:0003700),Molecular Function: protein dimerization activity (GO:0046983),Cellular Component: nucleus (GO:0005634);InterPro=Transcription factor%2C MADS-box superfamily (IPR036879),Transcription factor%2C MADS-box (IPR002100),MADS MEF2-like (IPR033896),Transcription factor%2C K-box (IPR002487);NIAS_FLcDNA=J023063L04;Manual Curation=May 15%2C 2020;Literature_PMID=28429576,20003164;Oryzabase=3079;Expression=AK100263;TENOR=Os08t0531700-01;KEGG=Os08t0531700-01;Subcellular location=nucleus (GO:0005634)
Chr08	irgsp1_rep	five_prime_UTR	26507926	26507990	.	+	.	Parent=Os08t0531700-01
Chr08	irgsp1_rep	CDS	26507991	26508175	.	+	0	Parent=Os08t0531700-01
Chr08	irgsp1_rep	CDS	26509100	26509178	.	+	1	Parent=Os08t0531700-01
Chr08	irgsp1_rep	CDS	26509403	26509471	.	+	0	Parent=Os08t0531700-01
Chr08	irgsp1_rep	CDS	26510657	26510758	.	+	0	Parent=Os08t0531700-01
Chr08	irgsp1_rep	CDS	26511135	26511176	.	+	0	Parent=Os08t0531700-01
Chr08	irgsp1_rep	CDS	26511268	26511309	.	+	0	Parent=Os08t0531700-01
Chr08	irgsp1_rep	CDS	26511594	26511751	.	+	0	Parent=Os08t0531700-01
Chr08	irgsp1_rep	CDS	26511950	26512022	.	+	1	Parent=Os08t0531700-01
Chr08	irgsp1_rep	three_prime_UTR	26512023	26512261	.	+	.	Parent=Os08t0531700-01
Chr08	irgsp1_rep	mRNA	26518976	26529016	.	+	.	ID=Os08t0531900-01;Name=Os08t0531900-01;Locus_id=Os08g0531900;CGSNL Gene Symbol=MADS37;CGSNL Gene Name=MADS BOX GENE 37;Oryzabase Gene Symbol Synonym(s)=OsMADS37%2C DLN217%2C OsDLN217;Oryzabase Gene Name Synonym(s)=MADS box gene37%2C MADS box gene 37%2C MADS-box transcription factor 37%2C DLN repressor 217%2C DLN motif protein 217;Note=Similar to MADS box transcription factor-like protein (MADS-box protein AGL72).;Transcript_evidence=AK242980 (DDBJ%2C Best hit);ORF_evidence=Q1G158 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box (IPR002100);NIAS_FLcDNA=J090094F15;Oryzabase=12336;TENOR=Os08t0531900-01;KEGG=Os08t0531900-01
Chr08	irgsp1_rep	five_prime_UTR	26518976	26519303	.	+	.	Parent=Os08t0531900-01
Chr08	irgsp1_rep	CDS	26519304	26519512	.	+	0	Parent=Os08t0531900-01
Chr08	irgsp1_rep	CDS	26520456	26520552	.	+	1	Parent=Os08t0531900-01
Chr08	irgsp1_rep	CDS	26527921	26527979	.	+	0	Parent=Os08t0531900-01
Chr08	irgsp1_rep	CDS	26528079	26528166	.	+	1	Parent=Os08t0531900-01
Chr08	irgsp1_rep	CDS	26528334	26528378	.	+	0	Parent=Os08t0531900-01
Chr08	irgsp1_rep	CDS	26528666	26528719	.	+	0	Parent=Os08t0531900-01
Chr08	irgsp1_rep	three_prime_UTR	26528720	26529016	.	+	.	Parent=Os08t0531900-01
Chr08	irgsp1_rep	mRNA	26531415	26534074	.	-	.	ID=Os08t0532200-01;Name=Os08t0532200-01;Locus_id=Os08g0532200;Oryzabase Gene Symbol Synonym(s)=GSA%2C GSAT%2C HEML%2C OsGSA%2C OsGSAT%2C OsHEML;Oryzabase Gene Name Synonym(s)="Glutamate-1-semialdehyde 2%2C 1-aminomutase"%2C Glutamate-1-semialdehyde aminotransferase;Note=Similar to Glutamate-1-semialdehyde 2%2C1-aminomutase%2C chloroplast precursor (EC 5.4.3.8) (GSA) (Glutamate-1-semialdehyde aminotransferase) (GSA- AT).;Transcript_evidence=AK064826 (DDBJ%2C Best hit);ORF_evidence=Q6YZE2 (UniProt);GO=Biological Process: tetrapyrrole biosynthetic process (GO:0033014),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transaminase activity (GO:0008483),Molecular Function: pyridoxal phosphate binding (GO:0030170),Molecular Function: glutamate-1-semialdehyde 2%2C1-aminomutase activity (GO:0042286);InterPro=Tetrapyrrole biosynthesis%2C glutamate-1-semialdehyde aminotransferase (IPR004639),Aminotransferase class-III (IPR005814),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J013000F06;Oryzabase=19967;Expression=AK064826;TENOR=Os08t0532200-01;KEGG=Os08t0532200-01 (EC:5.4.3.8)
Chr08	irgsp1_rep	five_prime_UTR	26533994	26534074	.	-	.	Parent=Os08t0532200-01
Chr08	irgsp1_rep	CDS	26533799	26533993	.	-	0	Parent=Os08t0532200-01
Chr08	irgsp1_rep	CDS	26532808	26532981	.	-	0	Parent=Os08t0532200-01
Chr08	irgsp1_rep	CDS	26531615	26532682	.	-	0	Parent=Os08t0532200-01
Chr08	irgsp1_rep	three_prime_UTR	26531415	26531614	.	-	.	Parent=Os08t0532200-01
Chr08	irgsp1_rep	mRNA	26533187	26534074	.	-	.	ID=Os08t0532200-02;Name=Os08t0532200-02;Locus_id=Os08g0532200;Oryzabase Gene Symbol Synonym(s)=GSA%2C GSAT%2C HEML%2C OsGSA%2C OsGSAT%2C OsHEML;Oryzabase Gene Name Synonym(s)="Glutamate-1-semialdehyde 2%2C 1-aminomutase"%2C Glutamate-1-semialdehyde aminotransferase;Note=Similar to Glutamate-1-semialdehyde 2%2C1-aminomutase%2C chloroplastic.;Transcript_evidence=AK062854 (DDBJ%2C Best hit);ORF_evidence=Q6YZE2 (UniProt);NIAS_FLcDNA=001-108-A07;Oryzabase=19967;Expression=AK062854;TENOR=Os08t0532200-02;KEGG=Os08t0532200-02
Chr08	irgsp1_rep	five_prime_UTR	26533994	26534074	.	-	.	Parent=Os08t0532200-02
Chr08	irgsp1_rep	CDS	26533679	26533993	.	-	0	Parent=Os08t0532200-02
Chr08	irgsp1_rep	three_prime_UTR	26533187	26533678	.	-	.	Parent=Os08t0532200-02
Chr08	irgsp1_rep	mRNA	26531502	26534015	.	-	.	ID=Os08t0532200-03;Name=Os08t0532200-03;Locus_id=Os08g0532200;Oryzabase Gene Symbol Synonym(s)=GSA%2C GSAT%2C HEML%2C OsGSA%2C OsGSAT%2C OsHEML;Oryzabase Gene Name Synonym(s)="Glutamate-1-semialdehyde 2%2C 1-aminomutase"%2C Glutamate-1-semialdehyde aminotransferase;Note=Similar to Glutamate-1-semialdehyde 2%2C1-aminomutase%2C chloroplast precursor (EC 5.4.3.8) (GSA) (Glutamate-1-semialdehyde aminotransferase) (GSA- AT).;Transcript_evidence=AK104694 (DDBJ%2C Best hit);ORF_evidence=Q6YZE2 (UniProt);GO=Biological Process: tetrapyrrole biosynthetic process (GO:0033014),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transaminase activity (GO:0008483),Molecular Function: pyridoxal phosphate binding (GO:0030170),Molecular Function: glutamate-1-semialdehyde 2%2C1-aminomutase activity (GO:0042286);InterPro=Tetrapyrrole biosynthesis%2C glutamate-1-semialdehyde aminotransferase (IPR004639),Aminotransferase class-III (IPR005814),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=001-036-H12;Oryzabase=19967;Expression=AK104694;TENOR=Os08t0532200-03;KEGG=Os08t0532200-03 (EC:5.4.3.8)
Chr08	irgsp1_rep	five_prime_UTR	26533994	26534015	.	-	.	Parent=Os08t0532200-03
Chr08	irgsp1_rep	CDS	26533799	26533993	.	-	0	Parent=Os08t0532200-03
Chr08	irgsp1_rep	CDS	26532808	26532981	.	-	0	Parent=Os08t0532200-03
Chr08	irgsp1_rep	CDS	26531615	26532682	.	-	0	Parent=Os08t0532200-03
Chr08	irgsp1_rep	three_prime_UTR	26531502	26531614	.	-	.	Parent=Os08t0532200-03
Chr08	irgsp1_rep	mRNA	26535221	26537302	.	-	.	ID=Os08t0532300-01;Name=Os08t0532300-01;Locus_id=Os08g0532300;Note=Similar to Nuclear transport factor 2 (NTF-2) (Allergen Cla h ?).;Transcript_evidence=AK119730 (DDBJ%2C Best hit),AK065141 (DDBJ%2C Best hit);ORF_evidence=Q9XJ54 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: intracellular (GO:0005622);InterPro=Nuclear transport factor 2 (IPR002075),Nuclear transport factor 2%2C Eukaryote (IPR018222);NIAS_FLcDNA=002-157-H12,J013002A14;TENOR=Os08t0532300-01
Chr08	irgsp1_rep	five_prime_UTR	26537229	26537302	.	-	.	Parent=Os08t0532300-01
Chr08	irgsp1_rep	CDS	26536932	26537228	.	-	0	Parent=Os08t0532300-01
Chr08	irgsp1_rep	CDS	26535450	26535521	.	-	0	Parent=Os08t0532300-01
Chr08	irgsp1_rep	three_prime_UTR	26535221	26535449	.	-	.	Parent=Os08t0532300-01
Chr08	irgsp1_rep	mRNA	26535391	26537296	.	+	.	ID=Os08t0532350-00;Name=Os08t0532350-00;Locus_id=Os08g0532350;Note=Hypothetical gene.;Transcript_evidence=BT016844 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0532350-00;KEGG=Os08t0532350-00
Chr08	irgsp1_rep	five_prime_UTR	26535391	26535431	.	+	.	Parent=Os08t0532350-00
Chr08	irgsp1_rep	CDS	26535432	26535491	.	+	0	Parent=Os08t0532350-00
Chr08	irgsp1_rep	CDS	26536899	26537255	.	+	0	Parent=Os08t0532350-00
Chr08	irgsp1_rep	three_prime_UTR	26537256	26537296	.	+	.	Parent=Os08t0532350-00
Chr08	irgsp1_rep	mRNA	26537672	26542835	.	+	.	ID=Os08t0532400-01;Name=Os08t0532400-01;Locus_id=Os08g0532400;CGSNL Gene Symbol=MFS4;CGSNL Gene Name=MAJOR FACILITATOR SUPERFAMILY 4;Oryzabase Gene Symbol Synonym(s)=OsMFS4;Oryzabase Gene Name Synonym(s)=major facilitator superfamily 4;Note=Similar to AT.I.24-7 protein.;Transcript_evidence=AK101608 (DDBJ%2C Best hit);ORF_evidence=NP_001152103.1 (RefSeq);InterPro=Nodulin-like (IPR010658),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J033052A20;Oryzabase=21387;Expression=AK101608;TENOR=Os08t0532400-01;KEGG=Os08t0532400-01
Chr08	irgsp1_rep	five_prime_UTR	26537672	26537894	.	+	.	Parent=Os08t0532400-01
Chr08	irgsp1_rep	CDS	26537895	26538230	.	+	0	Parent=Os08t0532400-01
Chr08	irgsp1_rep	CDS	26540304	26541241	.	+	0	Parent=Os08t0532400-01
Chr08	irgsp1_rep	CDS	26541981	26542494	.	+	1	Parent=Os08t0532400-01
Chr08	irgsp1_rep	three_prime_UTR	26542495	26542835	.	+	.	Parent=Os08t0532400-01
Chr08	irgsp1_rep	mRNA	26543222	26545411	.	+	.	ID=Os08t0532500-01;Name=Os08t0532500-01;Locus_id=Os08g0532500;Note=Hypothetical conserved gene.;Transcript_evidence=AK071880 (DDBJ%2C Best hit);ORF_evidence=Q6YZD8 (UniProt);GO=Biological Process: transcription initiation%2C DNA-dependent (GO:0006352),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: zinc ion binding (GO:0008270);InterPro=Transcription factor TFIIB (IPR000812),Cyclin-like (IPR013763);NIAS_FLcDNA=J013043I23;Expression=AK071880;TENOR=Os08t0532500-01;KEGG=Os08t0532500-01
Chr08	irgsp1_rep	five_prime_UTR	26543222	26543323	.	+	.	Parent=Os08t0532500-01
Chr08	irgsp1_rep	CDS	26543324	26545045	.	+	0	Parent=Os08t0532500-01
Chr08	irgsp1_rep	three_prime_UTR	26545046	26545411	.	+	.	Parent=Os08t0532500-01
Chr08	irgsp1_rep	mRNA	26543225	26545781	.	+	.	ID=Os08t0532500-02;Name=Os08t0532500-02;Locus_id=Os08g0532500;Note=Conserved hypothetical protein.;Transcript_evidence=AK105272 (DDBJ%2C Best hit);ORF_evidence=Q6YZD8 (UniProt);NIAS_FLcDNA=001-115-H01;Expression=AK105272;TENOR=Os08t0532500-02;KEGG=Os08t0532500-02
Chr08	irgsp1_rep	five_prime_UTR	26543225	26543226	.	+	.	Parent=Os08t0532500-02
Chr08	irgsp1_rep	CDS	26543227	26543815	.	+	0	Parent=Os08t0532500-02
Chr08	irgsp1_rep	CDS	26544294	26545045	.	+	2	Parent=Os08t0532500-02
Chr08	irgsp1_rep	three_prime_UTR	26545046	26545057	.	+	.	Parent=Os08t0532500-02
Chr08	irgsp1_rep	three_prime_UTR	26545419	26545781	.	+	.	Parent=Os08t0532500-02
Chr08	irgsp1_rep	mRNA	26546039	26549956	.	+	.	ID=Os08t0532600-01;Name=Os08t0532600-01;Locus_id=Os08g0532600;Note=Similar to Peroxidase (Fragment).;Transcript_evidence=AK119370 (DDBJ%2C Best hit);ORF_evidence=Q6YZD6 (UniProt);NIAS_FLcDNA=001-131-H09;Expression=AK119370;TENOR=Os08t0532600-01;KEGG=Os08t0532600-01
Chr08	irgsp1_rep	five_prime_UTR	26546039	26546426	.	+	.	Parent=Os08t0532600-01
Chr08	irgsp1_rep	CDS	26546427	26546555	.	+	0	Parent=Os08t0532600-01
Chr08	irgsp1_rep	CDS	26546662	26546772	.	+	0	Parent=Os08t0532600-01
Chr08	irgsp1_rep	three_prime_UTR	26546773	26548239	.	+	.	Parent=Os08t0532600-01
Chr08	irgsp1_rep	three_prime_UTR	26548793	26548951	.	+	.	Parent=Os08t0532600-01
Chr08	irgsp1_rep	three_prime_UTR	26549043	26549250	.	+	.	Parent=Os08t0532600-01
Chr08	irgsp1_rep	three_prime_UTR	26549474	26549956	.	+	.	Parent=Os08t0532600-01
Chr08	irgsp1_rep	mRNA	26546988	26549806	.	-	.	ID=Os08t0532700-01;Name=Os08t0532700-01;Locus_id=Os08g0532700;Note=Similar to Peroxidase 55 precursor (EC 1.11.1.7) (Atperox P55) (ATP20a).;Transcript_evidence=AK073978 (DDBJ%2C Best hit);ORF_evidence=Q5U1H0 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793);NIAS_FLcDNA=J033076N21;Expression=AK073978;TENOR=Os08t0532700-01;KEGG=Os08t0532700-01 (EC:1.11.1.7)
Chr08	irgsp1_rep	five_prime_UTR	26549749	26549806	.	-	.	Parent=Os08t0532700-01
Chr08	irgsp1_rep	CDS	26549497	26549748	.	-	0	Parent=Os08t0532700-01
Chr08	irgsp1_rep	CDS	26548046	26548237	.	-	0	Parent=Os08t0532700-01
Chr08	irgsp1_rep	CDS	26547254	26547829	.	-	0	Parent=Os08t0532700-01
Chr08	irgsp1_rep	three_prime_UTR	26546988	26547253	.	-	.	Parent=Os08t0532700-01
Chr08	irgsp1_rep	mRNA	26554159	26557021	.	-	.	ID=Os08t0532800-02;Name=Os08t0532800-02;Locus_id=Os08g0532800;Oryzabase Gene Symbol Synonym(s)=OsLTPG22%2C OsLTPg22;Oryzabase Gene Name Synonym(s)=GPI-anchored non-specific lipid transfer protein 22%2C type G nsLTP 22%2C type G non-specific lipid transfer protein 22;Note=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor domain containing protein.;Transcript_evidence=AK061214 (DDBJ%2C Best hit),AK067802 (DDBJ%2C Best hit);ORF_evidence=NP_001150532.1 (RefSeq);NIAS_FLcDNA=006-210-D09,J013120P05;Oryzabase=13506;Expression=AK061214;TENOR=Os08t0532800-02;KEGG=Os08t0532800-02
Chr08	irgsp1_rep	five_prime_UTR	26556932	26557021	.	-	.	Parent=Os08t0532800-02
Chr08	irgsp1_rep	CDS	26556589	26556931	.	-	0	Parent=Os08t0532800-02
Chr08	irgsp1_rep	CDS	26555280	26555339	.	-	2	Parent=Os08t0532800-02
Chr08	irgsp1_rep	CDS	26554515	26554651	.	-	2	Parent=Os08t0532800-02
Chr08	irgsp1_rep	three_prime_UTR	26554159	26554514	.	-	.	Parent=Os08t0532800-02
Chr08	irgsp1_rep	mRNA	26554192	26557021	.	-	.	ID=Os08t0532800-03;Name=Os08t0532800-03;Locus_id=Os08g0532800;Oryzabase Gene Symbol Synonym(s)=OsLTPG22%2C OsLTPg22;Oryzabase Gene Name Synonym(s)=GPI-anchored non-specific lipid transfer protein 22%2C type G nsLTP 22%2C type G non-specific lipid transfer protein 22;Note=Similar to Lipid transfer protein.;Transcript_evidence=AK061387 (DDBJ%2C Best hit),AK104251 (DDBJ%2C Best hit);ORF_evidence=NP_001150532.1 (RefSeq);NIAS_FLcDNA=006-305-A08,006-309-A04;Oryzabase=13506;TENOR=Os08t0532800-03;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	26556932	26557021	.	-	.	Parent=Os08t0532800-03
Chr08	irgsp1_rep	CDS	26556589	26556931	.	-	0	Parent=Os08t0532800-03
Chr08	irgsp1_rep	CDS	26555280	26555339	.	-	2	Parent=Os08t0532800-03
Chr08	irgsp1_rep	CDS	26554515	26554648	.	-	2	Parent=Os08t0532800-03
Chr08	irgsp1_rep	three_prime_UTR	26554192	26554514	.	-	.	Parent=Os08t0532800-03
Chr08	irgsp1_rep	mRNA	26558999	26562152	.	-	.	ID=Os08t0532900-01;Name=Os08t0532900-01;Locus_id=Os08g0532900;Note=emp24/gp25L/p24 family protein.;Transcript_evidence=AK073679 (DDBJ%2C Best hit);ORF_evidence=B6SUS5 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: integral to membrane (GO:0016021);InterPro=GOLD (IPR009038);NIAS_FLcDNA=J033050B05;Expression=AK073679;TENOR=Os08t0532900-01;KEGG=Os08t0532900-01
Chr08	irgsp1_rep	five_prime_UTR	26562054	26562152	.	-	.	Parent=Os08t0532900-01
Chr08	irgsp1_rep	five_prime_UTR	26561559	26561602	.	-	.	Parent=Os08t0532900-01
Chr08	irgsp1_rep	CDS	26561349	26561558	.	-	0	Parent=Os08t0532900-01
Chr08	irgsp1_rep	CDS	26560396	26560582	.	-	0	Parent=Os08t0532900-01
Chr08	irgsp1_rep	CDS	26560205	26560312	.	-	2	Parent=Os08t0532900-01
Chr08	irgsp1_rep	CDS	26559162	26559295	.	-	2	Parent=Os08t0532900-01
Chr08	irgsp1_rep	three_prime_UTR	26558999	26559161	.	-	.	Parent=Os08t0532900-01
Chr08	irgsp1_rep	mRNA	26558909	26561586	.	-	.	ID=Os08t0532900-02;Name=Os08t0532900-02;Locus_id=Os08g0532900;Note=emp24/gp25L/p24 family protein.;Transcript_evidence=AK105383 (DDBJ%2C Best hit);ORF_evidence=B6SUS5 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: integral to membrane (GO:0016021);InterPro=GOLD (IPR009038);NIAS_FLcDNA=001-121-C01;Expression=AK105383;TENOR=Os08t0532900-02;KEGG=Os08t0532900-02
Chr08	irgsp1_rep	five_prime_UTR	26561559	26561586	.	-	.	Parent=Os08t0532900-02
Chr08	irgsp1_rep	CDS	26561349	26561558	.	-	0	Parent=Os08t0532900-02
Chr08	irgsp1_rep	CDS	26560396	26560582	.	-	0	Parent=Os08t0532900-02
Chr08	irgsp1_rep	CDS	26560205	26560312	.	-	2	Parent=Os08t0532900-02
Chr08	irgsp1_rep	CDS	26559162	26559295	.	-	2	Parent=Os08t0532900-02
Chr08	irgsp1_rep	three_prime_UTR	26558909	26559161	.	-	.	Parent=Os08t0532900-02
Chr08	irgsp1_rep	mRNA	26559012	26561623	.	+	.	ID=Os08t0533101-00;Name=Os08t0533101-00;Locus_id=Os08g0533101;Note=Hypothetical gene.;Transcript_evidence=BT016449 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0533101-00
Chr08	irgsp1_rep	five_prime_UTR	26559012	26559290	.	+	.	Parent=Os08t0533101-00
Chr08	irgsp1_rep	five_prime_UTR	26560196	26560309	.	+	.	Parent=Os08t0533101-00
Chr08	irgsp1_rep	five_prime_UTR	26560386	26560584	.	+	.	Parent=Os08t0533101-00
Chr08	irgsp1_rep	five_prime_UTR	26561355	26561375	.	+	.	Parent=Os08t0533101-00
Chr08	irgsp1_rep	CDS	26561376	26561623	.	+	0	Parent=Os08t0533101-00
Chr08	irgsp1_rep	mRNA	26572162	26574946	.	+	.	ID=Os08t0533300-01;Name=Os08t0533300-01;Locus_id=Os08g0533300;Note=Similar to ACR5.;Transcript_evidence=AK287480 (DDBJ%2C Best hit);ORF_evidence=B6SYQ4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: amino acid binding (GO:0016597);InterPro=Amino acid-binding ACT (IPR002912);NIAS_FLcDNA=J043024A08;TENOR=Os08t0533300-01;KEGG=Os08t0533300-01
Chr08	irgsp1_rep	five_prime_UTR	26572162	26572375	.	+	.	Parent=Os08t0533300-01
Chr08	irgsp1_rep	CDS	26572376	26572452	.	+	0	Parent=Os08t0533300-01
Chr08	irgsp1_rep	CDS	26572572	26572615	.	+	1	Parent=Os08t0533300-01
Chr08	irgsp1_rep	CDS	26572729	26572845	.	+	2	Parent=Os08t0533300-01
Chr08	irgsp1_rep	CDS	26573003	26573070	.	+	2	Parent=Os08t0533300-01
Chr08	irgsp1_rep	CDS	26573149	26573793	.	+	0	Parent=Os08t0533300-01
Chr08	irgsp1_rep	CDS	26574169	26574273	.	+	0	Parent=Os08t0533300-01
Chr08	irgsp1_rep	CDS	26574357	26574707	.	+	0	Parent=Os08t0533300-01
Chr08	irgsp1_rep	three_prime_UTR	26574708	26574946	.	+	.	Parent=Os08t0533300-01
Chr08	irgsp1_rep	mRNA	26572729	26574496	.	-	.	ID=Os08t0533450-00;Name=Os08t0533450-00;Locus_id=Os08g0533450;Note=Hypothetical protein.;Transcript_evidence=tplb0061b06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0533450-00
Chr08	irgsp1_rep	five_prime_UTR	26574308	26574496	.	-	.	Parent=Os08t0533450-00
Chr08	irgsp1_rep	CDS	26574268	26574307	.	-	0	Parent=Os08t0533450-00
Chr08	irgsp1_rep	CDS	26573125	26573804	.	-	2	Parent=Os08t0533450-00
Chr08	irgsp1_rep	three_prime_UTR	26573082	26573124	.	-	.	Parent=Os08t0533450-00
Chr08	irgsp1_rep	three_prime_UTR	26572729	26572852	.	-	.	Parent=Os08t0533450-00
Chr08	irgsp1_rep	mRNA	26601165	26605519	.	+	.	ID=Os08t0533600-01;Name=Os08t0533600-01;Locus_id=Os08g0533600;CGSNL Gene Symbol=ACR8;CGSNL Gene Name=ACT DOMAIN REPEAT PROTEIN 8;Oryzabase Gene Symbol Synonym(s)=OsACR8;Oryzabase Gene Name Synonym(s)=ACT-domain repeat protein 8;Note=Similar to ACR4.;Transcript_evidence=AK106161 (DDBJ%2C Best hit),AK061731 (DDBJ%2C Best hit);ORF_evidence=NP_001147811.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: amino acid binding (GO:0016597);InterPro=Amino acid-binding ACT (IPR002912);NIAS_FLcDNA=001-208-A12,001-038-C04;Oryzabase=7258;Expression=AK106161;TENOR=Os08t0533600-01;KEGG=Os08t0533600-01
Chr08	irgsp1_rep	five_prime_UTR	26601165	26601545	.	+	.	Parent=Os08t0533600-01
Chr08	irgsp1_rep	CDS	26601546	26601628	.	+	0	Parent=Os08t0533600-01
Chr08	irgsp1_rep	CDS	26603169	26603214	.	+	1	Parent=Os08t0533600-01
Chr08	irgsp1_rep	CDS	26603350	26603464	.	+	0	Parent=Os08t0533600-01
Chr08	irgsp1_rep	CDS	26603887	26603954	.	+	2	Parent=Os08t0533600-01
Chr08	irgsp1_rep	CDS	26604056	26604682	.	+	0	Parent=Os08t0533600-01
Chr08	irgsp1_rep	CDS	26604769	26604873	.	+	0	Parent=Os08t0533600-01
Chr08	irgsp1_rep	CDS	26604957	26605304	.	+	0	Parent=Os08t0533600-01
Chr08	irgsp1_rep	three_prime_UTR	26605305	26605519	.	+	.	Parent=Os08t0533600-01
Chr08	irgsp1_rep	mRNA	26601228	26605539	.	+	.	ID=Os08t0533600-02;Name=Os08t0533600-02;Locus_id=Os08g0533600;CGSNL Gene Symbol=ACR8;CGSNL Gene Name=ACT DOMAIN REPEAT PROTEIN 8;Oryzabase Gene Symbol Synonym(s)=OsACR8;Oryzabase Gene Name Synonym(s)=ACT-domain repeat protein 8;Note=Similar to ACR4.;Transcript_evidence=AK098885 (DDBJ%2C Best hit);ORF_evidence=NP_001147811.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: amino acid binding (GO:0016597);InterPro=Amino acid-binding ACT (IPR002912);NIAS_FLcDNA=J013001I07;Oryzabase=7258;Expression=AK098885;TENOR=Os08t0533600-02;KEGG=Os08t0533600-02
Chr08	irgsp1_rep	five_prime_UTR	26601228	26601545	.	+	.	Parent=Os08t0533600-02
Chr08	irgsp1_rep	CDS	26601546	26601628	.	+	0	Parent=Os08t0533600-02
Chr08	irgsp1_rep	CDS	26603169	26603214	.	+	1	Parent=Os08t0533600-02
Chr08	irgsp1_rep	CDS	26603350	26603464	.	+	0	Parent=Os08t0533600-02
Chr08	irgsp1_rep	CDS	26603887	26603954	.	+	2	Parent=Os08t0533600-02
Chr08	irgsp1_rep	CDS	26604056	26604682	.	+	0	Parent=Os08t0533600-02
Chr08	irgsp1_rep	CDS	26604769	26604873	.	+	0	Parent=Os08t0533600-02
Chr08	irgsp1_rep	CDS	26604957	26605304	.	+	0	Parent=Os08t0533600-02
Chr08	irgsp1_rep	three_prime_UTR	26605305	26605539	.	+	.	Parent=Os08t0533600-02
Chr08	irgsp1_rep	mRNA	26603342	26605097	.	-	.	ID=Os08t0533650-00;Name=Os08t0533650-00;Locus_id=Os08g0533650;Note=Hypothetical protein.;Transcript_evidence=tplb0061b06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0533650-00
Chr08	irgsp1_rep	five_prime_UTR	26604899	26605097	.	-	.	Parent=Os08t0533650-00
Chr08	irgsp1_rep	five_prime_UTR	26604698	26604726	.	-	.	Parent=Os08t0533650-00
Chr08	irgsp1_rep	CDS	26604050	26604697	.	-	0	Parent=Os08t0533650-00
Chr08	irgsp1_rep	three_prime_UTR	26603990	26604049	.	-	.	Parent=Os08t0533650-00
Chr08	irgsp1_rep	three_prime_UTR	26603342	26603483	.	-	.	Parent=Os08t0533650-00
Chr08	irgsp1_rep	mRNA	26606691	26609530	.	+	.	ID=Os08t0533700-01;Name=Os08t0533700-01;Locus_id=Os08g0533700;Note=Similar to cation cation antiporter.;Transcript_evidence=AK073691 (DDBJ%2C Best hit);ORF_evidence=NP_001148426.1 (RefSeq);InterPro=Vesicle transport protein%2C Use1 (IPR019150);NIAS_FLcDNA=J033060E01;Expression=AK073691;TENOR=Os08t0533700-01;KEGG=Os08t0533700-01
Chr08	irgsp1_rep	five_prime_UTR	26606691	26606886	.	+	.	Parent=Os08t0533700-01
Chr08	irgsp1_rep	five_prime_UTR	26607167	26607191	.	+	.	Parent=Os08t0533700-01
Chr08	irgsp1_rep	CDS	26607192	26607275	.	+	0	Parent=Os08t0533700-01
Chr08	irgsp1_rep	CDS	26607549	26607616	.	+	0	Parent=Os08t0533700-01
Chr08	irgsp1_rep	CDS	26608242	26608314	.	+	1	Parent=Os08t0533700-01
Chr08	irgsp1_rep	CDS	26608541	26608650	.	+	0	Parent=Os08t0533700-01
Chr08	irgsp1_rep	CDS	26608733	26608837	.	+	1	Parent=Os08t0533700-01
Chr08	irgsp1_rep	CDS	26609057	26609156	.	+	1	Parent=Os08t0533700-01
Chr08	irgsp1_rep	CDS	26609231	26609407	.	+	0	Parent=Os08t0533700-01
Chr08	irgsp1_rep	three_prime_UTR	26609408	26609530	.	+	.	Parent=Os08t0533700-01
Chr08	irgsp1_rep	mRNA	26640420	26647372	.	+	.	ID=Os08t0533900-00;Name=Os08t0533900-00;Locus_id=Os08g0533900;Note=Hypothetical conserved gene.;Transcript_evidence=AY302058 (DDBJ%2C Secondary hit);ORF_evidence=Q94DG6 (UniProt);Expression=AY302058;TENOR=Os08t0533900-00;KEGG=Os08t0533900-00
Chr08	irgsp1_rep	five_prime_UTR	26640420	26640472	.	+	.	Parent=Os08t0533900-00
Chr08	irgsp1_rep	CDS	26640473	26640946	.	+	0	Parent=Os08t0533900-00
Chr08	irgsp1_rep	three_prime_UTR	26640947	26641052	.	+	.	Parent=Os08t0533900-00
Chr08	irgsp1_rep	three_prime_UTR	26646114	26646201	.	+	.	Parent=Os08t0533900-00
Chr08	irgsp1_rep	three_prime_UTR	26646766	26647372	.	+	.	Parent=Os08t0533900-00
Chr08	irgsp1_rep	mRNA	26652114	26655784	.	+	.	ID=Os08t0534200-01;Name=Os08t0534200-01;Locus_id=Os08g0534200;Note=Similar to HEAT repeat family protein.;Transcript_evidence=AK101015 (DDBJ%2C Best hit);ORF_evidence=B6TWZ9 (UniProt);NIAS_FLcDNA=J023149C09;TENOR=Os08t0534200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	26652114	26652346	.	+	.	Parent=Os08t0534200-01
Chr08	irgsp1_rep	five_prime_UTR	26653390	26653397	.	+	.	Parent=Os08t0534200-01
Chr08	irgsp1_rep	CDS	26653398	26653649	.	+	0	Parent=Os08t0534200-01
Chr08	irgsp1_rep	CDS	26653748	26653854	.	+	0	Parent=Os08t0534200-01
Chr08	irgsp1_rep	CDS	26654050	26654155	.	+	1	Parent=Os08t0534200-01
Chr08	irgsp1_rep	three_prime_UTR	26654156	26654295	.	+	.	Parent=Os08t0534200-01
Chr08	irgsp1_rep	three_prime_UTR	26654404	26654598	.	+	.	Parent=Os08t0534200-01
Chr08	irgsp1_rep	three_prime_UTR	26655148	26655784	.	+	.	Parent=Os08t0534200-01
Chr08	irgsp1_rep	mRNA	26652155	26655784	.	+	.	ID=Os08t0534200-02;Name=Os08t0534200-02;Locus_id=Os08g0534200;Note=Similar to HEAT repeat family protein.;Transcript_evidence=AK066926 (DDBJ%2C Best hit);ORF_evidence=B6TWZ9 (UniProt);NIAS_FLcDNA=J013091O05;Expression=AK066926;TENOR=Os08t0534200-02;KEGG=Os08t0534200-02
Chr08	irgsp1_rep	five_prime_UTR	26652155	26652346	.	+	.	Parent=Os08t0534200-02
Chr08	irgsp1_rep	five_prime_UTR	26653390	26653397	.	+	.	Parent=Os08t0534200-02
Chr08	irgsp1_rep	CDS	26653398	26653649	.	+	0	Parent=Os08t0534200-02
Chr08	irgsp1_rep	CDS	26653748	26653858	.	+	0	Parent=Os08t0534200-02
Chr08	irgsp1_rep	three_prime_UTR	26653859	26654598	.	+	.	Parent=Os08t0534200-02
Chr08	irgsp1_rep	three_prime_UTR	26655148	26655784	.	+	.	Parent=Os08t0534200-02
Chr08	irgsp1_rep	mRNA	26656152	26656650	.	-	.	ID=Os08t0534300-00;Name=Os08t0534300-00;Locus_id=Os08g0534300;CGSNL Gene Symbol=SAUR35;CGSNL Gene Name=SMALL AUXIN-UP RNA 35;Oryzabase Gene Symbol Synonym(s)=OsSAUR35;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 35;Note=Similar to calmodulin binding protein.;Transcript_evidence=tplb0019a16 (Wheat FLcDNA);ORF_evidence=NP_001149909.1 (RefSeq);InterPro=Auxin responsive SAUR protein (IPR003676);Oryzabase=9160;TENOR=Os08t0534300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	26656219	26656650	.	-	0	Parent=Os08t0534300-00
Chr08	irgsp1_rep	three_prime_UTR	26656152	26656218	.	-	.	Parent=Os08t0534300-00
Chr08	irgsp1_rep	mRNA	26658525	26667717	.	+	.	ID=Os08t0534350-00;Name=Os08t0534350-00;Locus_id=Os08g0534350;Note=Similar to cation cation antiporter.;Transcript_evidence=AK066324 (DDBJ%2C Secondary hit);ORF_evidence=NP_001148426.1 (RefSeq);InterPro=Vesicle transport protein%2C Use1 (IPR019150);TENOR=Os08t0534350-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	26658525	26658748	.	+	.	Parent=Os08t0534350-00
Chr08	irgsp1_rep	five_prime_UTR	26659034	26659051	.	+	.	Parent=Os08t0534350-00
Chr08	irgsp1_rep	CDS	26659052	26659135	.	+	0	Parent=Os08t0534350-00
Chr08	irgsp1_rep	CDS	26659416	26659483	.	+	0	Parent=Os08t0534350-00
Chr08	irgsp1_rep	CDS	26660381	26660453	.	+	1	Parent=Os08t0534350-00
Chr08	irgsp1_rep	CDS	26660670	26660783	.	+	0	Parent=Os08t0534350-00
Chr08	irgsp1_rep	three_prime_UTR	26660784	26660851	.	+	.	Parent=Os08t0534350-00
Chr08	irgsp1_rep	three_prime_UTR	26667598	26667717	.	+	.	Parent=Os08t0534350-00
Chr08	irgsp1_rep	mRNA	26662244	26664175	.	+	.	ID=Os08t0534400-01;Name=Os08t0534400-01;Locus_id=Os08g0534400;Note=EKC/KEOPS complex%2C subunit Pcc1 domain containing protein.;Transcript_evidence=AK058382 (DDBJ%2C Best hit);ORF_evidence=NP_001172915.1 (RefSeq);InterPro=EKC/KEOPS complex%2C subunit Pcc1 (IPR015419);NIAS_FLcDNA=001-014-H07;TENOR=Os08t0534400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	26662244	26662431	.	+	.	Parent=Os08t0534400-01
Chr08	irgsp1_rep	five_prime_UTR	26663476	26663548	.	+	.	Parent=Os08t0534400-01
Chr08	irgsp1_rep	five_prime_UTR	26663627	26663634	.	+	.	Parent=Os08t0534400-01
Chr08	irgsp1_rep	CDS	26663635	26663726	.	+	0	Parent=Os08t0534400-01
Chr08	irgsp1_rep	CDS	26663818	26663944	.	+	1	Parent=Os08t0534400-01
Chr08	irgsp1_rep	three_prime_UTR	26663945	26664175	.	+	.	Parent=Os08t0534400-01
Chr08	irgsp1_rep	mRNA	26687987	26694103	.	+	.	ID=Os08t0534900-01;Name=Os08t0534900-01;Locus_id=Os08g0534900;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=AK109343 (DDBJ%2C Best hit),AK061777 (DDBJ%2C Best hit);ORF_evidence=B6TWZ9 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),CLASP N-terminal domain (IPR024395);NIAS_FLcDNA=006-202-G11,001-039-D08;Expression=AK109343;TENOR=Os08t0534900-01;KEGG=Os08t0534900-01
Chr08	irgsp1_rep	five_prime_UTR	26687987	26688257	.	+	.	Parent=Os08t0534900-01
Chr08	irgsp1_rep	five_prime_UTR	26691709	26691716	.	+	.	Parent=Os08t0534900-01
Chr08	irgsp1_rep	CDS	26691717	26691968	.	+	0	Parent=Os08t0534900-01
Chr08	irgsp1_rep	CDS	26692067	26692173	.	+	0	Parent=Os08t0534900-01
Chr08	irgsp1_rep	CDS	26692482	26692614	.	+	1	Parent=Os08t0534900-01
Chr08	irgsp1_rep	CDS	26692723	26692917	.	+	0	Parent=Os08t0534900-01
Chr08	irgsp1_rep	CDS	26693467	26693820	.	+	0	Parent=Os08t0534900-01
Chr08	irgsp1_rep	three_prime_UTR	26693821	26694103	.	+	.	Parent=Os08t0534900-01
Chr08	irgsp1_rep	mRNA	26694471	26694969	.	-	.	ID=Os08t0534950-00;Name=Os08t0534950-00;Locus_id=Os08g0534950;CGSNL Gene Symbol=SAUR34;CGSNL Gene Name=SMALL AUXIN-UP RNA 34;Oryzabase Gene Symbol Synonym(s)=OsSAUR34;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 34;Note=Similar to calmodulin binding protein.;Transcript_evidence=tplb0019a16 (Wheat FLcDNA);ORF_evidence=NP_001149909.1 (RefSeq);InterPro=Auxin responsive SAUR protein (IPR003676);Oryzabase=9159;TENOR=Os08t0534950-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	26694538	26694969	.	-	0	Parent=Os08t0534950-00
Chr08	irgsp1_rep	three_prime_UTR	26694471	26694537	.	-	.	Parent=Os08t0534950-00
Chr08	irgsp1_rep	mRNA	26696844	26699288	.	+	.	ID=Os08t0535000-00;Name=Os08t0535000-00;Locus_id=Os08g0535000;Note=Similar to cation cation antiporter.;Transcript_evidence=AK066324 (DDBJ%2C Best hit);ORF_evidence=NP_001148426.1 (RefSeq);InterPro=Vesicle transport protein%2C Use1 (IPR019150);NIAS_FLcDNA=J013062D13;TENOR=Os08t0535000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	26696844	26697067	.	+	.	Parent=Os08t0535000-00
Chr08	irgsp1_rep	five_prime_UTR	26697350	26697367	.	+	.	Parent=Os08t0535000-00
Chr08	irgsp1_rep	CDS	26697368	26697451	.	+	0	Parent=Os08t0535000-00
Chr08	irgsp1_rep	CDS	26697732	26697799	.	+	0	Parent=Os08t0535000-00
Chr08	irgsp1_rep	CDS	26698698	26698770	.	+	1	Parent=Os08t0535000-00
Chr08	irgsp1_rep	CDS	26698987	26699100	.	+	0	Parent=Os08t0535000-00
Chr08	irgsp1_rep	three_prime_UTR	26699101	26699288	.	+	.	Parent=Os08t0535000-00
Chr08	irgsp1_rep	mRNA	26707901	26711611	.	+	.	ID=Os08t0535050-01;Name=Os08t0535050-01;Locus_id=Os08g0535050;Note=Conserved hypothetical protein.;Transcript_evidence=AK108659 (DDBJ%2C Best hit);ORF_evidence=A3BV79 (UniProt);NIAS_FLcDNA=002-148-E12;TENOR=Os08t0535050-01
Chr08	irgsp1_rep	five_prime_UTR	26707901	26708160	.	+	.	Parent=Os08t0535050-01
Chr08	irgsp1_rep	five_prime_UTR	26709817	26709863	.	+	.	Parent=Os08t0535050-01
Chr08	irgsp1_rep	CDS	26709864	26710142	.	+	0	Parent=Os08t0535050-01
Chr08	irgsp1_rep	CDS	26710415	26710480	.	+	0	Parent=Os08t0535050-01
Chr08	irgsp1_rep	three_prime_UTR	26710481	26710498	.	+	.	Parent=Os08t0535050-01
Chr08	irgsp1_rep	three_prime_UTR	26710593	26710835	.	+	.	Parent=Os08t0535050-01
Chr08	irgsp1_rep	three_prime_UTR	26710912	26711611	.	+	.	Parent=Os08t0535050-01
Chr08	irgsp1_rep	mRNA	26707919	26712480	.	+	.	ID=Os08t0535050-02;Name=Os08t0535050-02;Locus_id=Os08g0535050;Note=Conserved hypothetical protein.;Transcript_evidence=AK101573 (DDBJ%2C Best hit);ORF_evidence=A3BV79 (UniProt);NIAS_FLcDNA=J033050J16;TENOR=Os08t0535050-02
Chr08	irgsp1_rep	five_prime_UTR	26707919	26708160	.	+	.	Parent=Os08t0535050-02
Chr08	irgsp1_rep	five_prime_UTR	26709814	26709863	.	+	.	Parent=Os08t0535050-02
Chr08	irgsp1_rep	CDS	26709864	26710142	.	+	0	Parent=Os08t0535050-02
Chr08	irgsp1_rep	CDS	26710415	26710480	.	+	0	Parent=Os08t0535050-02
Chr08	irgsp1_rep	three_prime_UTR	26710481	26710498	.	+	.	Parent=Os08t0535050-02
Chr08	irgsp1_rep	three_prime_UTR	26710593	26710835	.	+	.	Parent=Os08t0535050-02
Chr08	irgsp1_rep	three_prime_UTR	26710912	26711301	.	+	.	Parent=Os08t0535050-02
Chr08	irgsp1_rep	three_prime_UTR	26711975	26712480	.	+	.	Parent=Os08t0535050-02
Chr08	irgsp1_rep	mRNA	26713276	26716392	.	-	.	ID=Os08t0535100-01;Name=Os08t0535100-01;Locus_id=Os08g0535100;Note=Conserved hypothetical protein.;Transcript_evidence=AK065449 (DDBJ%2C Best hit);ORF_evidence=B9G1Z6 (UniProt);NIAS_FLcDNA=J013003P03;TENOR=Os08t0535100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	26716334	26716392	.	-	.	Parent=Os08t0535100-01
Chr08	irgsp1_rep	CDS	26715431	26716333	.	-	0	Parent=Os08t0535100-01
Chr08	irgsp1_rep	three_prime_UTR	26714649	26715430	.	-	.	Parent=Os08t0535100-01
Chr08	irgsp1_rep	three_prime_UTR	26714297	26714543	.	-	.	Parent=Os08t0535100-01
Chr08	irgsp1_rep	three_prime_UTR	26713276	26713834	.	-	.	Parent=Os08t0535100-01
Chr08	irgsp1_rep	mRNA	26713639	26716190	.	+	.	ID=Os08t0535150-00;Name=Os08t0535150-00;Locus_id=Os08g0535150;Note=Hypothetical protein.;Transcript_evidence=tplb0034e17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0535150-00
Chr08	irgsp1_rep	five_prime_UTR	26713639	26713836	.	+	.	Parent=Os08t0535150-00
Chr08	irgsp1_rep	five_prime_UTR	26714300	26714538	.	+	.	Parent=Os08t0535150-00
Chr08	irgsp1_rep	five_prime_UTR	26714641	26715179	.	+	.	Parent=Os08t0535150-00
Chr08	irgsp1_rep	CDS	26715180	26715569	.	+	0	Parent=Os08t0535150-00
Chr08	irgsp1_rep	three_prime_UTR	26715570	26715853	.	+	.	Parent=Os08t0535150-00
Chr08	irgsp1_rep	three_prime_UTR	26715918	26716190	.	+	.	Parent=Os08t0535150-00
Chr08	irgsp1_rep	mRNA	26725952	26728794	.	-	.	ID=Os08t0535200-01;Name=Os08t0535200-01;Locus_id=Os08g0535200;RAP-DB Gene Symbol Synonym(s)=Os8N3%2C OsSWEET11%2C xa13%2C xa13/Os8N3;CGSNL Gene Symbol=XA13;CGSNL Gene Name=XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 13;Oryzabase Gene Symbol Synonym(s)=xa13%2C Xa13%2C Os8N3%2C Os-8N3%2C 8N3%2C OsSWEET11%2C SWEET11%2C OsSWEET11/Xa13%2C Xa13/Os8N3/SWEET11%2C Os8N3/Xa13%2C OsSWEET11/Os8N3;Oryzabase Gene Name Synonym(s)=Xanthomonas oryzae pv. oryzae resistance 13%2C Xanthomonas campestris pv. oryzae resistance-13%2C Xanthomonas oryzae pv. oryzae resistance-13;Note=Sugar transporter%2C A member of the MtN3 gene family%2C Host disease-susceptibility gene for bacterial blight;Transcript_evidence=AK070510,AK106127;ORF_evidence=Q6YZF3;GO=Cellular Component: integral component of membrane (GO:0016021);InterPro=SWEET sugar transporter (IPR004316);NIAS_FLcDNA=J023056B21,001-207-F06;Manual Curation=September 3%2C 2019;Literature_PMID=31446506,16798873;Oryzabase=834;TENOR=Os08t0535200-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	26728624	26728794	.	-	.	Parent=Os08t0535200-01
Chr08	irgsp1_rep	CDS	26728566	26728623	.	-	0	Parent=Os08t0535200-01
Chr08	irgsp1_rep	CDS	26727486	26727522	.	-	2	Parent=Os08t0535200-01
Chr08	irgsp1_rep	CDS	26727015	26727387	.	-	1	Parent=Os08t0535200-01
Chr08	irgsp1_rep	CDS	26726801	26726920	.	-	0	Parent=Os08t0535200-01
Chr08	irgsp1_rep	CDS	26726373	26726708	.	-	0	Parent=Os08t0535200-01
Chr08	irgsp1_rep	three_prime_UTR	26725952	26726372	.	-	.	Parent=Os08t0535200-01
Chr08	irgsp1_rep	mRNA	26744957	26748439	.	-	.	ID=Os08t0535400-01;Name=Os08t0535400-01;Locus_id=Os08g0535400;Note=Zinc finger%2C DHHC-type domain containing protein.;Transcript_evidence=AK071527 (DDBJ%2C Best hit);ORF_evidence=B6TIX4 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C DHHC-type%2C palmitoyltransferase (IPR001594);NIAS_FLcDNA=J023099O15;Expression=AK071527;TENOR=Os08t0535400-01;KEGG=Os08t0535400-01
Chr08	irgsp1_rep	five_prime_UTR	26748153	26748439	.	-	.	Parent=Os08t0535400-01
Chr08	irgsp1_rep	CDS	26748063	26748152	.	-	0	Parent=Os08t0535400-01
Chr08	irgsp1_rep	CDS	26746641	26746823	.	-	0	Parent=Os08t0535400-01
Chr08	irgsp1_rep	CDS	26746129	26746425	.	-	0	Parent=Os08t0535400-01
Chr08	irgsp1_rep	CDS	26745747	26745980	.	-	0	Parent=Os08t0535400-01
Chr08	irgsp1_rep	CDS	26745214	26745660	.	-	0	Parent=Os08t0535400-01
Chr08	irgsp1_rep	three_prime_UTR	26744957	26745213	.	-	.	Parent=Os08t0535400-01
Chr08	irgsp1_rep	mRNA	26745213	26745768	.	+	.	ID=Os08t0535501-00;Name=Os08t0535501-00;Locus_id=Os08g0535501;Note=Hypothetical gene.;Transcript_evidence=EU943668 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0535501-00;KEGG=Os08t0535501-00
Chr08	irgsp1_rep	five_prime_UTR	26745213	26745286	.	+	.	Parent=Os08t0535501-00
Chr08	irgsp1_rep	CDS	26745287	26745634	.	+	0	Parent=Os08t0535501-00
Chr08	irgsp1_rep	three_prime_UTR	26745635	26745768	.	+	.	Parent=Os08t0535501-00
Chr08	irgsp1_rep	mRNA	26749784	26751095	.	-	.	ID=Os08t0535600-01;Name=Os08t0535600-01;Locus_id=Os08g0535600;Note=Zinc finger%2C Tim10/DDP-type family protein.;Transcript_evidence=AK121683 (DDBJ%2C Best hit);ORF_evidence=NP_001148628.1 (RefSeq);GO=Biological Process: protein targeting to mitochondrion (GO:0006626),Biological Process: protein import into mitochondrial inner membrane (GO:0045039),Cellular Component: mitochondrial intermembrane space protein transporter complex (GO:0042719);InterPro=Mitochondrial inner membrane translocase complex%2C Tim8/9/10/13-zinc finger-like (IPR004217);NIAS_FLcDNA=J033070B21;Expression=AK121683;TENOR=Os08t0535600-01;KEGG=Os08t0535600-01
Chr08	irgsp1_rep	five_prime_UTR	26751014	26751095	.	-	.	Parent=Os08t0535600-01
Chr08	irgsp1_rep	CDS	26750978	26751013	.	-	0	Parent=Os08t0535600-01
Chr08	irgsp1_rep	CDS	26749936	26750121	.	-	0	Parent=Os08t0535600-01
Chr08	irgsp1_rep	three_prime_UTR	26749784	26749935	.	-	.	Parent=Os08t0535600-01
Chr08	irgsp1_rep	mRNA	26751395	26754247	.	+	.	ID=Os08t0535700-00;Name=Os08t0535700-00;Locus_id=Os08g0535700;Oryzabase Gene Symbol Synonym(s)=OsSTA217;Note=Similar to glycerophosphodiester phosphodiesterase.;Transcript_evidence=BT037277 (DDBJ);ORF_evidence=NP_001150964.1 (RefSeq);GO=Biological Process: glycerol metabolic process (GO:0006071),Biological Process: lipid metabolic process (GO:0006629),Molecular Function: phosphoric diester hydrolase activity (GO:0008081),Molecular Function: glycerophosphodiester phosphodiesterase activity (GO:0008889);InterPro=Glycerophosphoryl diester phosphodiesterase (IPR004129),PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain (IPR017946);Oryzabase=19489;TENOR=Os08t0535700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	26751395	26751395	.	+	.	Parent=Os08t0535700-00
Chr08	irgsp1_rep	CDS	26751396	26751692	.	+	0	Parent=Os08t0535700-00
Chr08	irgsp1_rep	CDS	26752321	26752380	.	+	0	Parent=Os08t0535700-00
Chr08	irgsp1_rep	CDS	26752493	26752879	.	+	0	Parent=Os08t0535700-00
Chr08	irgsp1_rep	CDS	26752988	26753083	.	+	0	Parent=Os08t0535700-00
Chr08	irgsp1_rep	CDS	26753721	26753917	.	+	0	Parent=Os08t0535700-00
Chr08	irgsp1_rep	CDS	26754016	26754247	.	+	1	Parent=Os08t0535700-00
Chr08	irgsp1_rep	mRNA	26756342	26756825	.	+	.	ID=Os08t0535750-00;Name=Os08t0535750-00;Locus_id=Os08g0535750;Note=Non-protein coding transcript.;Transcript_evidence=CT835954 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os08t0535750-00
Chr08	irgsp1_rep	exon	26756342	26756825	.	+	.	Parent=Os08t0535750-00
Chr08	irgsp1_rep	mRNA	26766816	26770105	.	+	.	ID=Os08t0535800-01;Name=Os08t0535800-01;Locus_id=Os08g0535800;Oryzabase Gene Symbol Synonym(s)=ONAC005%2C ONAC5%2C ONAC035%2C ONAC35%2C ONAC046%2C ONAC46%2C ONAC052%2C ONAC52;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 005%2C NAC domain-containing protein 5%2C NAC domain-containing protein 35%2C NAC domain-containing protein 46%2C NAC domain-containing protein 52;Note=No apical meristem (NAM) protein domain containing protein.;Transcript_evidence=AK067906 (DDBJ%2C Best hit);ORF_evidence=NP_001151483.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=J013126H02;Oryzabase=11457;Expression=AK067906;TENOR=Os08t0535800-01;KEGG=Os08t0535800-01
Chr08	irgsp1_rep	five_prime_UTR	26766816	26767310	.	+	.	Parent=Os08t0535800-01
Chr08	irgsp1_rep	CDS	26767311	26767509	.	+	0	Parent=Os08t0535800-01
Chr08	irgsp1_rep	CDS	26767591	26767877	.	+	2	Parent=Os08t0535800-01
Chr08	irgsp1_rep	CDS	26769636	26769848	.	+	0	Parent=Os08t0535800-01
Chr08	irgsp1_rep	three_prime_UTR	26769849	26770105	.	+	.	Parent=Os08t0535800-01
Chr08	irgsp1_rep	mRNA	26766974	26770335	.	+	.	ID=Os08t0535800-02;Name=Os08t0535800-02;Locus_id=Os08g0535800;Oryzabase Gene Symbol Synonym(s)=ONAC005%2C ONAC5%2C ONAC035%2C ONAC35%2C ONAC046%2C ONAC46%2C ONAC052%2C ONAC52;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 005%2C NAC domain-containing protein 5%2C NAC domain-containing protein 35%2C NAC domain-containing protein 46%2C NAC domain-containing protein 52;Note=No apical meristem (NAM) protein domain containing protein.;Transcript_evidence=AK068776 (DDBJ%2C Best hit),AK061543 (DDBJ%2C Best hit),AK104766 (DDBJ%2C Best hit);ORF_evidence=NP_001151483.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=J013160K11,006-311-A02,001-038-H11;Oryzabase=11457;TENOR=Os08t0535800-02
Chr08	irgsp1_rep	five_prime_UTR	26766974	26767310	.	+	.	Parent=Os08t0535800-02
Chr08	irgsp1_rep	CDS	26767311	26767509	.	+	0	Parent=Os08t0535800-02
Chr08	irgsp1_rep	CDS	26767591	26767877	.	+	2	Parent=Os08t0535800-02
Chr08	irgsp1_rep	CDS	26769636	26769848	.	+	0	Parent=Os08t0535800-02
Chr08	irgsp1_rep	three_prime_UTR	26769849	26770335	.	+	.	Parent=Os08t0535800-02
Chr08	irgsp1_rep	mRNA	26769337	26769904	.	-	.	ID=Os08t0535900-01;Name=Os08t0535900-01;Locus_id=Os08g0535900;Note=Hypothetical protein.;Transcript_evidence=AK107757 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-133-A05;Expression=AK107757;TENOR=Os08t0535900-01;KEGG=Os08t0535900-01
Chr08	irgsp1_rep	five_prime_UTR	26769781	26769904	.	-	.	Parent=Os08t0535900-01
Chr08	irgsp1_rep	CDS	26769562	26769780	.	-	0	Parent=Os08t0535900-01
Chr08	irgsp1_rep	three_prime_UTR	26769337	26769561	.	-	.	Parent=Os08t0535900-01
Chr08	irgsp1_rep	mRNA	26777982	26783294	.	+	.	ID=Os08t0536000-01;Name=Os08t0536000-01;Locus_id=Os08g0536000;Note=Similar to Pyruvate dehydrogenase E1 beta subunit isoform 1 (EC 1.2.4.1).;Transcript_evidence=AK071782 (DDBJ%2C Best hit),AK104686 (DDBJ%2C Best hit);ORF_evidence=B6T6H3 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Transketolase-like%2C pyrimidine-binding domain (IPR005475),Transketolase%2C C-terminal (IPR005476),Transketolase%2C C-terminal/Pyruvate-ferredoxin oxidoreductase%2C domain II (IPR009014),Transketolase-like%2C C-terminal (IPR015941);NIAS_FLcDNA=J023108B21,001-036-C11;TENOR=Os08t0536000-01
Chr08	irgsp1_rep	five_prime_UTR	26777982	26778145	.	+	.	Parent=Os08t0536000-01
Chr08	irgsp1_rep	CDS	26778146	26778184	.	+	0	Parent=Os08t0536000-01
Chr08	irgsp1_rep	CDS	26778333	26778413	.	+	0	Parent=Os08t0536000-01
Chr08	irgsp1_rep	CDS	26779246	26779353	.	+	0	Parent=Os08t0536000-01
Chr08	irgsp1_rep	CDS	26779460	26779522	.	+	0	Parent=Os08t0536000-01
Chr08	irgsp1_rep	CDS	26779624	26779710	.	+	0	Parent=Os08t0536000-01
Chr08	irgsp1_rep	CDS	26780173	26780298	.	+	0	Parent=Os08t0536000-01
Chr08	irgsp1_rep	CDS	26780660	26780793	.	+	0	Parent=Os08t0536000-01
Chr08	irgsp1_rep	CDS	26780869	26780941	.	+	1	Parent=Os08t0536000-01
Chr08	irgsp1_rep	CDS	26781061	26781126	.	+	0	Parent=Os08t0536000-01
Chr08	irgsp1_rep	CDS	26782157	26782195	.	+	0	Parent=Os08t0536000-01
Chr08	irgsp1_rep	CDS	26782309	26782433	.	+	0	Parent=Os08t0536000-01
Chr08	irgsp1_rep	CDS	26782520	26782634	.	+	1	Parent=Os08t0536000-01
Chr08	irgsp1_rep	CDS	26782859	26782927	.	+	0	Parent=Os08t0536000-01
Chr08	irgsp1_rep	three_prime_UTR	26782928	26783294	.	+	.	Parent=Os08t0536000-01
Chr08	irgsp1_rep	mRNA	26785706	26791060	.	+	.	ID=Os08t0536100-01;Name=Os08t0536100-01;Locus_id=Os08g0536100;Note=Hypothetical conserved gene.;Transcript_evidence=AK099654 (DDBJ%2C Best hit);ORF_evidence=A3BV91 (UniProt);NIAS_FLcDNA=J013066A21;Expression=AK099654;TENOR=Os08t0536100-01;KEGG=Os08t0536100-01
Chr08	irgsp1_rep	five_prime_UTR	26785706	26785854	.	+	.	Parent=Os08t0536100-01
Chr08	irgsp1_rep	five_prime_UTR	26786040	26786271	.	+	.	Parent=Os08t0536100-01
Chr08	irgsp1_rep	five_prime_UTR	26786824	26787131	.	+	.	Parent=Os08t0536100-01
Chr08	irgsp1_rep	CDS	26787132	26788301	.	+	0	Parent=Os08t0536100-01
Chr08	irgsp1_rep	CDS	26788395	26788646	.	+	0	Parent=Os08t0536100-01
Chr08	irgsp1_rep	CDS	26789392	26789517	.	+	0	Parent=Os08t0536100-01
Chr08	irgsp1_rep	three_prime_UTR	26789518	26790506	.	+	.	Parent=Os08t0536100-01
Chr08	irgsp1_rep	three_prime_UTR	26790799	26791060	.	+	.	Parent=Os08t0536100-01
Chr08	irgsp1_rep	mRNA	26785710	26791061	.	+	.	ID=Os08t0536100-02;Name=Os08t0536100-02;Locus_id=Os08g0536100;Note=Hypothetical conserved gene.;Transcript_evidence=AK067265 (DDBJ%2C Best hit);ORF_evidence=A3BV91 (UniProt);NIAS_FLcDNA=J013095D09;Expression=AK067265;TENOR=Os08t0536100-02;KEGG=Os08t0536100-02
Chr08	irgsp1_rep	five_prime_UTR	26785710	26785854	.	+	.	Parent=Os08t0536100-02
Chr08	irgsp1_rep	five_prime_UTR	26786040	26786271	.	+	.	Parent=Os08t0536100-02
Chr08	irgsp1_rep	five_prime_UTR	26786824	26787131	.	+	.	Parent=Os08t0536100-02
Chr08	irgsp1_rep	CDS	26787132	26788301	.	+	0	Parent=Os08t0536100-02
Chr08	irgsp1_rep	CDS	26788395	26788646	.	+	0	Parent=Os08t0536100-02
Chr08	irgsp1_rep	CDS	26789392	26789472	.	+	0	Parent=Os08t0536100-02
Chr08	irgsp1_rep	CDS	26790100	26790165	.	+	0	Parent=Os08t0536100-02
Chr08	irgsp1_rep	three_prime_UTR	26790166	26790506	.	+	.	Parent=Os08t0536100-02
Chr08	irgsp1_rep	three_prime_UTR	26790799	26791061	.	+	.	Parent=Os08t0536100-02
Chr08	irgsp1_rep	mRNA	26785711	26791059	.	+	.	ID=Os08t0536100-03;Name=Os08t0536100-03;Locus_id=Os08g0536100;Note=Conserved hypothetical protein.;Transcript_evidence=AK102567 (DDBJ%2C Best hit);ORF_evidence=A3BV91 (UniProt);NIAS_FLcDNA=J033097K24;TENOR=Os08t0536100-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	26785711	26785854	.	+	.	Parent=Os08t0536100-03
Chr08	irgsp1_rep	five_prime_UTR	26786040	26786271	.	+	.	Parent=Os08t0536100-03
Chr08	irgsp1_rep	five_prime_UTR	26786824	26787131	.	+	.	Parent=Os08t0536100-03
Chr08	irgsp1_rep	CDS	26787132	26788301	.	+	0	Parent=Os08t0536100-03
Chr08	irgsp1_rep	CDS	26788395	26788646	.	+	0	Parent=Os08t0536100-03
Chr08	irgsp1_rep	CDS	26789392	26789472	.	+	0	Parent=Os08t0536100-03
Chr08	irgsp1_rep	CDS	26789865	26790012	.	+	0	Parent=Os08t0536100-03
Chr08	irgsp1_rep	CDS	26790100	26790506	.	+	2	Parent=Os08t0536100-03
Chr08	irgsp1_rep	CDS	26790799	26790855	.	+	0	Parent=Os08t0536100-03
Chr08	irgsp1_rep	three_prime_UTR	26790856	26791059	.	+	.	Parent=Os08t0536100-03
Chr08	irgsp1_rep	mRNA	26787690	26791061	.	+	.	ID=Os08t0536100-04;Name=Os08t0536100-04;Locus_id=Os08g0536100;Note=Hypothetical conserved gene.;Transcript_evidence=AK061684 (DDBJ%2C Best hit);ORF_evidence=Q6Z1G5 (UniProt);NIAS_FLcDNA=001-037-A08;Expression=AK061684;TENOR=Os08t0536100-04;KEGG=Os08t0536100-04
Chr08	irgsp1_rep	CDS	26787690	26788301	.	+	0	Parent=Os08t0536100-04
Chr08	irgsp1_rep	CDS	26788395	26788646	.	+	0	Parent=Os08t0536100-04
Chr08	irgsp1_rep	CDS	26789392	26789472	.	+	0	Parent=Os08t0536100-04
Chr08	irgsp1_rep	CDS	26790100	26790165	.	+	0	Parent=Os08t0536100-04
Chr08	irgsp1_rep	three_prime_UTR	26790166	26790506	.	+	.	Parent=Os08t0536100-04
Chr08	irgsp1_rep	three_prime_UTR	26790799	26791061	.	+	.	Parent=Os08t0536100-04
Chr08	irgsp1_rep	mRNA	26786846	26790855	.	-	.	ID=Os08t0536150-00;Name=Os08t0536150-00;Locus_id=Os08g0536150;Note=Hypothetical protein.;Transcript_evidence=tplb0028g11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0536150-00
Chr08	irgsp1_rep	five_prime_UTR	26790797	26790855	.	-	.	Parent=Os08t0536150-00
Chr08	irgsp1_rep	five_prime_UTR	26790274	26790504	.	-	.	Parent=Os08t0536150-00
Chr08	irgsp1_rep	CDS	26790076	26790273	.	-	0	Parent=Os08t0536150-00
Chr08	irgsp1_rep	CDS	26789989	26790021	.	-	0	Parent=Os08t0536150-00
Chr08	irgsp1_rep	three_prime_UTR	26789863	26789988	.	-	.	Parent=Os08t0536150-00
Chr08	irgsp1_rep	three_prime_UTR	26789384	26789470	.	-	.	Parent=Os08t0536150-00
Chr08	irgsp1_rep	three_prime_UTR	26788392	26788643	.	-	.	Parent=Os08t0536150-00
Chr08	irgsp1_rep	three_prime_UTR	26786846	26788298	.	-	.	Parent=Os08t0536150-00
Chr08	irgsp1_rep	mRNA	26791868	26792452	.	+	.	ID=Os08t0536200-00;Name=Os08t0536200-00;Locus_id=Os08g0536200;Note=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup domain containing protein.;Transcript_evidence=Q6Z1G3 (UniProt);ORF_evidence=Q6Z1G3 (UniProt);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup (IPR006459),Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);TENOR=Os08t0536200-00
Chr08	irgsp1_rep	CDS	26791868	26792046	.	+	0	Parent=Os08t0536200-00
Chr08	irgsp1_rep	CDS	26792125	26792452	.	+	1	Parent=Os08t0536200-00
Chr08	irgsp1_rep	mRNA	26792942	26797114	.	-	.	ID=Os08t0536300-01;Name=Os08t0536300-01;Locus_id=Os08g0536300;Oryzabase Gene Symbol Synonym(s)=OsBBX26%2C BBX26%2C OsO%2C OsCCT30%2C CCT30%2C OsCOL15%2C COL15%2C OsCOL15/OsBBX26%2C Hd1-3;Oryzabase Gene Name Synonym(s)=B-box-containing protein 26%2C CCT domain-containing gene 30%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 30%2C CCT domain protein 30%2C CONSTANS-like protein 15%2C CONSTANS-like transcription factor 15;Note=Similar to Hd1.;Transcript_evidence=AK099722 (DDBJ%2C Best hit);ORF_evidence=A3BV93 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C B-box (IPR000315),CCT domain (IPR010402);NIAS_FLcDNA=J013088K05;Oryzabase=11656;Expression=AK099722;TENOR=Os08t0536300-01;KEGG=Os08t0536300-01
Chr08	irgsp1_rep	five_prime_UTR	26797002	26797114	.	-	.	Parent=Os08t0536300-01
Chr08	irgsp1_rep	CDS	26796162	26797001	.	-	0	Parent=Os08t0536300-01
Chr08	irgsp1_rep	CDS	26794747	26794974	.	-	0	Parent=Os08t0536300-01
Chr08	irgsp1_rep	CDS	26793477	26793758	.	-	0	Parent=Os08t0536300-01
Chr08	irgsp1_rep	CDS	26793253	26793369	.	-	0	Parent=Os08t0536300-01
Chr08	irgsp1_rep	three_prime_UTR	26792942	26793252	.	-	.	Parent=Os08t0536300-01
Chr08	irgsp1_rep	mRNA	26802303	26802717	.	+	.	ID=Os08t0536333-00;Name=Os08t0536333-00;Locus_id=Os08g0536333;Note=Non-protein coding transcript.;Transcript_evidence=CT835951 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os08t0536333-00
Chr08	irgsp1_rep	exon	26802303	26802717	.	+	.	Parent=Os08t0536333-00
Chr08	irgsp1_rep	mRNA	26803111	26803286	.	+	.	ID=Os08t0536341-00;Name=Os08t0536341-00;Locus_id=Os08g0536341;Note=Non-protein coding transcript.;Transcript_evidence=FP100628 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0536341-00
Chr08	irgsp1_rep	exon	26803111	26803286	.	+	.	Parent=Os08t0536341-00
Chr08	irgsp1_rep	mRNA	26807207	26808282	.	+	.	ID=Os08t0536350-01;Name=Os08t0536350-01;Locus_id=Os08g0536350;Note=Non-protein coding transcript.;Transcript_evidence=AK240880 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065027E01;TENOR=Os08t0536350-01
Chr08	irgsp1_rep	exon	26807207	26808282	.	+	.	Parent=Os08t0536350-01
Chr08	irgsp1_rep	mRNA	26813837	26814065	.	+	.	ID=Os08t0536358-00;Name=Os08t0536358-00;Locus_id=Os08g0536358;Note=Non-protein coding transcript.;Transcript_evidence=FP100628 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0536358-00
Chr08	irgsp1_rep	exon	26813837	26814065	.	+	.	Parent=Os08t0536358-00
Chr08	irgsp1_rep	mRNA	26817267	26817630	.	-	.	ID=Os08t0536366-00;Name=Os08t0536366-00;Locus_id=Os08g0536366;Note=Non-protein coding transcript.;Transcript_evidence=BT062831 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0536366-00
Chr08	irgsp1_rep	exon	26817267	26817630	.	-	.	Parent=Os08t0536366-00
Chr08	irgsp1_rep	mRNA	26817443	26817646	.	+	.	ID=Os08t0536383-00;Name=Os08t0536383-00;Locus_id=Os08g0536383;Note=Non-protein coding transcript.;Transcript_evidence=FP100628 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0536383-00
Chr08	irgsp1_rep	exon	26817443	26817646	.	+	.	Parent=Os08t0536383-00
Chr08	irgsp1_rep	mRNA	26820090	26822091	.	+	.	ID=Os08t0536400-01;Name=Os08t0536400-01;Locus_id=Os08g0536400;Note=Hypothetical protein.;Transcript_evidence=AK062466 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=001-103-E02;Expression=AK062466;TENOR=Os08t0536400-01;KEGG=Os08t0536400-01
Chr08	irgsp1_rep	five_prime_UTR	26820090	26820116	.	+	.	Parent=Os08t0536400-01
Chr08	irgsp1_rep	CDS	26820117	26820159	.	+	0	Parent=Os08t0536400-01
Chr08	irgsp1_rep	CDS	26820590	26820851	.	+	2	Parent=Os08t0536400-01
Chr08	irgsp1_rep	CDS	26821880	26821928	.	+	1	Parent=Os08t0536400-01
Chr08	irgsp1_rep	three_prime_UTR	26821929	26822091	.	+	.	Parent=Os08t0536400-01
Chr08	irgsp1_rep	mRNA	26841066	26843300	.	-	.	ID=Os08t0536800-01;Name=Os08t0536800-01;Locus_id=Os08g0536800;Oryzabase Gene Symbol Synonym(s)=OsbHLH080;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 080;Note=Similar to TA1 protein (Fragment).;Transcript_evidence=AK059041 (DDBJ%2C Best hit);ORF_evidence=B6TAV6 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=001-021-D04;Oryzabase=15367;Expression=AK059041;TENOR=Os08t0536800-01;KEGG=Os08t0536800-01
Chr08	irgsp1_rep	five_prime_UTR	26843277	26843300	.	-	.	Parent=Os08t0536800-01
Chr08	irgsp1_rep	CDS	26843152	26843276	.	-	0	Parent=Os08t0536800-01
Chr08	irgsp1_rep	CDS	26842907	26843099	.	-	1	Parent=Os08t0536800-01
Chr08	irgsp1_rep	CDS	26842631	26842783	.	-	0	Parent=Os08t0536800-01
Chr08	irgsp1_rep	CDS	26842434	26842499	.	-	0	Parent=Os08t0536800-01
Chr08	irgsp1_rep	CDS	26842201	26842269	.	-	0	Parent=Os08t0536800-01
Chr08	irgsp1_rep	CDS	26842029	26842106	.	-	0	Parent=Os08t0536800-01
Chr08	irgsp1_rep	CDS	26841785	26841934	.	-	0	Parent=Os08t0536800-01
Chr08	irgsp1_rep	CDS	26841546	26841641	.	-	0	Parent=Os08t0536800-01
Chr08	irgsp1_rep	three_prime_UTR	26841496	26841545	.	-	.	Parent=Os08t0536800-01
Chr08	irgsp1_rep	three_prime_UTR	26841066	26841374	.	-	.	Parent=Os08t0536800-01
Chr08	irgsp1_rep	mRNA	26851246	26856594	.	+	.	ID=Os08t0537001-01;Name=Os08t0537001-01;Locus_id=Os08g0537001;Oryzabase Gene Symbol Synonym(s)=OsSTA218;Note=Conserved hypothetical protein.;Transcript_evidence=AK241793 (DDBJ%2C Best hit);ORF_evidence=NP_001175670.1 (RefSeq);NIAS_FLcDNA=J065208D01;Oryzabase=19490;TENOR=Os08t0537001-01;KEGG=Os08t0537001-01
Chr08	irgsp1_rep	five_prime_UTR	26851246	26851547	.	+	.	Parent=Os08t0537001-01
Chr08	irgsp1_rep	five_prime_UTR	26851705	26852029	.	+	.	Parent=Os08t0537001-01
Chr08	irgsp1_rep	five_prime_UTR	26852212	26852299	.	+	.	Parent=Os08t0537001-01
Chr08	irgsp1_rep	five_prime_UTR	26852957	26853706	.	+	.	Parent=Os08t0537001-01
Chr08	irgsp1_rep	CDS	26853707	26854276	.	+	0	Parent=Os08t0537001-01
Chr08	irgsp1_rep	three_prime_UTR	26854277	26854627	.	+	.	Parent=Os08t0537001-01
Chr08	irgsp1_rep	three_prime_UTR	26854855	26854886	.	+	.	Parent=Os08t0537001-01
Chr08	irgsp1_rep	three_prime_UTR	26855818	26855880	.	+	.	Parent=Os08t0537001-01
Chr08	irgsp1_rep	three_prime_UTR	26856295	26856594	.	+	.	Parent=Os08t0537001-01
Chr08	irgsp1_rep	mRNA	26852059	26857339	.	-	.	ID=Os08t0537002-01;Name=Os08t0537002-01;Locus_id=Os08g0537002;Note=Hypothetical gene.;Transcript_evidence=AK288406 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090030F16;TENOR=Os08t0537002-01;KEGG=Os08t0537002-01
Chr08	irgsp1_rep	five_prime_UTR	26854255	26857339	.	-	.	Parent=Os08t0537002-01
Chr08	irgsp1_rep	CDS	26853979	26854254	.	-	0	Parent=Os08t0537002-01
Chr08	irgsp1_rep	three_prime_UTR	26852059	26853978	.	-	.	Parent=Os08t0537002-01
Chr08	irgsp1_rep	mRNA	26861859	26862428	.	-	.	ID=Os08t0537200-01;Name=Os08t0537200-01;Locus_id=Os08g0537200;Note=Hypothetical conserved gene.;Transcript_evidence=AK108234 (DDBJ%2C Best hit);ORF_evidence=A2YXI5 (UniProt);NIAS_FLcDNA=002-140-G06;Expression=AK108234;TENOR=Os08t0537200-01;KEGG=Os08t0537200-01
Chr08	irgsp1_rep	CDS	26862087	26862428	.	-	0	Parent=Os08t0537200-01
Chr08	irgsp1_rep	three_prime_UTR	26861859	26862086	.	-	.	Parent=Os08t0537200-01
Chr08	irgsp1_rep	mRNA	26871277	26879986	.	-	.	ID=Os08t0537600-01;Name=Os08t0537600-01;Locus_id=Os08g0537600;Note=Arf GTPase activating protein family protein.;Transcript_evidence=AK121123 (DDBJ%2C Best hit);ORF_evidence=NP_196834.3 (RefSeq);GO=Biological Process: regulation of ARF GTPase activity (GO:0032312),Cellular Component: cytoplasm (GO:0005737),Molecular Function: protein binding (GO:0005515),Molecular Function: ARF GTPase activator activity (GO:0008060),Molecular Function: zinc ion binding (GO:0008270);InterPro=Arf GTPase activating protein (IPR001164),Pleckstrin homology domain (IPR001849),Ankyrin repeat (IPR002110),BAR (IPR004148),Pleckstrin homology-type (IPR011993),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J023074J24;Expression=AK121123;TENOR=Os08t0537600-01;KEGG=Os08t0537600-01
Chr08	irgsp1_rep	five_prime_UTR	26879702	26879986	.	-	.	Parent=Os08t0537600-01
Chr08	irgsp1_rep	CDS	26879657	26879701	.	-	0	Parent=Os08t0537600-01
Chr08	irgsp1_rep	CDS	26878700	26878776	.	-	0	Parent=Os08t0537600-01
Chr08	irgsp1_rep	CDS	26878391	26878491	.	-	1	Parent=Os08t0537600-01
Chr08	irgsp1_rep	CDS	26877999	26878069	.	-	2	Parent=Os08t0537600-01
Chr08	irgsp1_rep	CDS	26877609	26877671	.	-	0	Parent=Os08t0537600-01
Chr08	irgsp1_rep	CDS	26877472	26877516	.	-	0	Parent=Os08t0537600-01
Chr08	irgsp1_rep	CDS	26877071	26877136	.	-	0	Parent=Os08t0537600-01
Chr08	irgsp1_rep	CDS	26876940	26876987	.	-	0	Parent=Os08t0537600-01
Chr08	irgsp1_rep	CDS	26876745	26876840	.	-	0	Parent=Os08t0537600-01
Chr08	irgsp1_rep	CDS	26876618	26876659	.	-	0	Parent=Os08t0537600-01
Chr08	irgsp1_rep	CDS	26875891	26876103	.	-	0	Parent=Os08t0537600-01
Chr08	irgsp1_rep	CDS	26875676	26875807	.	-	0	Parent=Os08t0537600-01
Chr08	irgsp1_rep	CDS	26875335	26875562	.	-	0	Parent=Os08t0537600-01
Chr08	irgsp1_rep	CDS	26875157	26875243	.	-	0	Parent=Os08t0537600-01
Chr08	irgsp1_rep	CDS	26874731	26875063	.	-	0	Parent=Os08t0537600-01
Chr08	irgsp1_rep	CDS	26873932	26874074	.	-	0	Parent=Os08t0537600-01
Chr08	irgsp1_rep	CDS	26873749	26873842	.	-	1	Parent=Os08t0537600-01
Chr08	irgsp1_rep	CDS	26872029	26872525	.	-	0	Parent=Os08t0537600-01
Chr08	irgsp1_rep	CDS	26871786	26871900	.	-	1	Parent=Os08t0537600-01
Chr08	irgsp1_rep	three_prime_UTR	26871277	26871785	.	-	.	Parent=Os08t0537600-01
Chr08	irgsp1_rep	mRNA	26883126	26887362	.	-	.	ID=Os08t0537800-01;Name=Os08t0537800-01;Locus_id=Os08g0537800;RAP-DB Gene Symbol Synonym(s)=WTG1%2C OsOTUB1;RAP-DB Gene Name Synonym(s)=WIDE AND THICK GRAIN 1;CGSNL Gene Symbol=WTG1;CGSNL Gene Name=WIDE AND THICK GRAIN 1;Oryzabase Gene Symbol Synonym(s)=OTUB1%2C OsOTUB1%2C OsOTUB1.1%2C OsOTUB1.2%2C qNPT1%2C OsWTG1;Oryzabase Gene Name Synonym(s)=new plant type 1%2C OTU domain-containing ubiquitin aldehyde-binding protein 1%2C wide and thick grain 1%2C otubain 1;Note=Otubain-like protease with deubiquitination activity%2C Determination of grain size and shape;Transcript_evidence=AK059388 (truncated),Inferred from literature;ORF_evidence=Inferred from literature;GO=Biological Process: protein deubiquitination (GO:0016579),Molecular Function: hydrolase activity (GO:0016787);InterPro=Peptidase C65%2C otubain (IPR019400),Ubiquitin thioesterase Otubain (IPR016615),OTU domain (IPR003323);NIAS_FLcDNA=001-026-H03 (truncated);Manual Curation=October 10%2C 2017;Literature_PMID=28621888;Oryzabase=21850;Expression=AK059388;TENOR=Os08t0537800-01;KEGG=Os08t0537800-01 (EC:3.4.19.12);B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737)
Chr08	irgsp1_rep	five_prime_UTR	26887305	26887362	.	-	.	Parent=Os08t0537800-01
Chr08	irgsp1_rep	CDS	26887212	26887304	.	-	0	Parent=Os08t0537800-01
Chr08	irgsp1_rep	CDS	26885950	26886015	.	-	0	Parent=Os08t0537800-01
Chr08	irgsp1_rep	CDS	26885756	26885839	.	-	0	Parent=Os08t0537800-01
Chr08	irgsp1_rep	CDS	26885560	26885682	.	-	0	Parent=Os08t0537800-01
Chr08	irgsp1_rep	CDS	26884862	26884914	.	-	0	Parent=Os08t0537800-01
Chr08	irgsp1_rep	CDS	26884655	26884704	.	-	1	Parent=Os08t0537800-01
Chr08	irgsp1_rep	CDS	26884482	26884582	.	-	2	Parent=Os08t0537800-01
Chr08	irgsp1_rep	CDS	26883485	26883739	.	-	0	Parent=Os08t0537800-01
Chr08	irgsp1_rep	three_prime_UTR	26883126	26883484	.	-	.	Parent=Os08t0537800-01
Chr08	irgsp1_rep	mRNA	26887813	26894090	.	+	.	ID=Os08t0537900-01;Name=Os08t0537900-01;Locus_id=Os08g0537900;CGSNL Gene Symbol=ERF106;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 106;Oryzabase Gene Symbol Synonym(s)=DERF7%2C OsDERF7%2C OsERF#106%2C OsERF106%2C AP2/EREBP#111%2C AP2/EREBP111;Oryzabase Gene Name Synonym(s)=drought-responsive ethylene response factor 7%2C drought-responsive ERF 7%2C ethylene response factor 106%2C APETALA2/ethylene-responsive element binding protein 111;Note=Similar to predicted protein.;Transcript_evidence=AK119425 (DDBJ%2C Best hit);ORF_evidence=Q9SSR5 (UniProt);InterPro=GDP-fucose protein O-fucosyltransferase (IPR019378),O-fucosyltransferase%2C plant (IPR024709);NIAS_FLcDNA=001-132-H07;Oryzabase=9693;Expression=AK119425;TENOR=Os08t0537900-01;KEGG=Os08t0537900-01
Chr08	irgsp1_rep	five_prime_UTR	26887813	26888007	.	+	.	Parent=Os08t0537900-01
Chr08	irgsp1_rep	CDS	26888008	26888153	.	+	0	Parent=Os08t0537900-01
Chr08	irgsp1_rep	CDS	26888242	26888339	.	+	1	Parent=Os08t0537900-01
Chr08	irgsp1_rep	CDS	26888449	26888516	.	+	2	Parent=Os08t0537900-01
Chr08	irgsp1_rep	CDS	26888837	26888925	.	+	0	Parent=Os08t0537900-01
Chr08	irgsp1_rep	CDS	26889028	26889249	.	+	1	Parent=Os08t0537900-01
Chr08	irgsp1_rep	CDS	26890298	26891036	.	+	1	Parent=Os08t0537900-01
Chr08	irgsp1_rep	three_prime_UTR	26891037	26891320	.	+	.	Parent=Os08t0537900-01
Chr08	irgsp1_rep	three_prime_UTR	26892224	26892446	.	+	.	Parent=Os08t0537900-01
Chr08	irgsp1_rep	three_prime_UTR	26893438	26894090	.	+	.	Parent=Os08t0537900-01
Chr08	irgsp1_rep	mRNA	26893410	26895496	.	+	.	ID=Os08t0537900-02;Name=Os08t0537900-02;Locus_id=Os08g0537900;CGSNL Gene Symbol=ERF106;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 106;Oryzabase Gene Symbol Synonym(s)=DERF7%2C OsDERF7%2C OsERF#106%2C OsERF106%2C AP2/EREBP#111%2C AP2/EREBP111;Oryzabase Gene Name Synonym(s)=drought-responsive ethylene response factor 7%2C drought-responsive ERF 7%2C ethylene response factor 106%2C APETALA2/ethylene-responsive element binding protein 111;Note=Hypothetical conserved gene.;Transcript_evidence=AK064252 (DDBJ%2C Best hit);ORF_evidence=B8B952 (UniProt);NIAS_FLcDNA=002-105-C06;Oryzabase=9693;Expression=AK064252;TENOR=Os08t0537900-02;KEGG=Os08t0537900-02
Chr08	irgsp1_rep	five_prime_UTR	26893410	26893411	.	+	.	Parent=Os08t0537900-02
Chr08	irgsp1_rep	CDS	26893412	26893778	.	+	0	Parent=Os08t0537900-02
Chr08	irgsp1_rep	CDS	26894543	26895132	.	+	2	Parent=Os08t0537900-02
Chr08	irgsp1_rep	three_prime_UTR	26895133	26895496	.	+	.	Parent=Os08t0537900-02
Chr08	irgsp1_rep	mRNA	26900384	26904520	.	+	.	ID=Os08t0538000-01;Name=Os08t0538000-01;Locus_id=Os08g0538000;Note=Similar to Glycyl-tRNA synthetase%2C mitochondrial precursor (EC 6.1.1.14) (Glycine--tRNA ligase) (GlyRS).;Transcript_evidence=AK119836 (DDBJ%2C Best hit);ORF_evidence=Q01L37 (UniProt);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: glycyl-tRNA aminoacylation (GO:0006426),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: glycine-tRNA ligase activity (GO:0004820),Molecular Function: ATP binding (GO:0005524);InterPro=WHEP-TRS (IPR000738),Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved domain (IPR002314),Glycyl-tRNA synthetase%2C alpha2 dimer (IPR002315),Anticodon-binding (IPR004154),Aminoacyl-tRNA synthetase%2C class II (IPR006195),S15/NS1%2C RNA-binding (IPR009068);NIAS_FLcDNA=002-178-B03;Expression=AK119836;TENOR=Os08t0538000-01;KEGG=Os08t0538000-01 (EC:6.1.1.14)
Chr08	irgsp1_rep	five_prime_UTR	26900384	26900462	.	+	.	Parent=Os08t0538000-01
Chr08	irgsp1_rep	CDS	26900463	26900855	.	+	0	Parent=Os08t0538000-01
Chr08	irgsp1_rep	CDS	26901447	26901829	.	+	0	Parent=Os08t0538000-01
Chr08	irgsp1_rep	CDS	26901939	26902056	.	+	1	Parent=Os08t0538000-01
Chr08	irgsp1_rep	CDS	26902240	26902434	.	+	0	Parent=Os08t0538000-01
Chr08	irgsp1_rep	CDS	26902560	26902784	.	+	0	Parent=Os08t0538000-01
Chr08	irgsp1_rep	CDS	26903015	26903074	.	+	0	Parent=Os08t0538000-01
Chr08	irgsp1_rep	CDS	26903198	26903278	.	+	0	Parent=Os08t0538000-01
Chr08	irgsp1_rep	CDS	26903384	26903789	.	+	0	Parent=Os08t0538000-01
Chr08	irgsp1_rep	CDS	26903972	26904207	.	+	2	Parent=Os08t0538000-01
Chr08	irgsp1_rep	three_prime_UTR	26904208	26904520	.	+	.	Parent=Os08t0538000-01
Chr08	irgsp1_rep	mRNA	26902343	26904435	.	+	.	ID=Os08t0538000-02;Name=Os08t0538000-02;Locus_id=Os08g0538000;Note=Similar to H0209H04.1 protein.;Transcript_evidence=AK068997 (DDBJ%2C Best hit);ORF_evidence=Q01L37 (UniProt);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: glycyl-tRNA aminoacylation (GO:0006426),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: glycine-tRNA ligase activity (GO:0004820),Molecular Function: ATP binding (GO:0005524);InterPro=Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved domain (IPR002314),Glycyl-tRNA synthetase%2C alpha2 dimer (IPR002315),Anticodon-binding (IPR004154);NIAS_FLcDNA=J013169I18;Expression=AK068997;TENOR=Os08t0538000-02;KEGG=Os08t0538000-02 (EC:6.1.1.14)
Chr08	irgsp1_rep	five_prime_UTR	26902343	26902344	.	+	.	Parent=Os08t0538000-02
Chr08	irgsp1_rep	CDS	26902345	26902434	.	+	0	Parent=Os08t0538000-02
Chr08	irgsp1_rep	CDS	26902560	26902784	.	+	0	Parent=Os08t0538000-02
Chr08	irgsp1_rep	CDS	26903015	26903074	.	+	0	Parent=Os08t0538000-02
Chr08	irgsp1_rep	CDS	26903198	26903278	.	+	0	Parent=Os08t0538000-02
Chr08	irgsp1_rep	CDS	26903384	26903789	.	+	0	Parent=Os08t0538000-02
Chr08	irgsp1_rep	CDS	26903972	26904207	.	+	2	Parent=Os08t0538000-02
Chr08	irgsp1_rep	three_prime_UTR	26904208	26904435	.	+	.	Parent=Os08t0538000-02
Chr08	irgsp1_rep	mRNA	26905207	26906508	.	-	.	ID=Os08t0538100-00;Name=Os08t0538100-00;Locus_id=Os08g0538100;Note=Hypothetical gene.;Transcript_evidence=EU956917 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0538100-00;KEGG=Os08t0538100-00
Chr08	irgsp1_rep	CDS	26905207	26906508	.	-	0	Parent=Os08t0538100-00
Chr08	irgsp1_rep	mRNA	26905017	26906620	.	+	.	ID=Os08t0538200-01;Name=Os08t0538200-01;Locus_id=Os08g0538200;Note=Protein of unknown function DUF247%2C plant family protein.;Transcript_evidence=AK108432 (DDBJ%2C Best hit);ORF_evidence=Q6ZD34 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);NIAS_FLcDNA=002-143-B01;Expression=AK108432;TENOR=Os08t0538200-01;KEGG=Os08t0538200-01
Chr08	irgsp1_rep	five_prime_UTR	26905017	26905056	.	+	.	Parent=Os08t0538200-01
Chr08	irgsp1_rep	CDS	26905057	26905857	.	+	0	Parent=Os08t0538200-01
Chr08	irgsp1_rep	CDS	26906493	26906615	.	+	0	Parent=Os08t0538200-01
Chr08	irgsp1_rep	three_prime_UTR	26906616	26906620	.	+	.	Parent=Os08t0538200-01
Chr08	irgsp1_rep	mRNA	26909127	26913492	.	+	.	ID=Os08t0538300-01;Name=Os08t0538300-01;Locus_id=Os08g0538300;RAP-DB Gene Symbol Synonym(s)=OsCERK1%2C OsLysM-RLK9%2C Os-CERK1%2C Os-LysM-RLK9%2C OsLysMRLK9;RAP-DB Gene Name Synonym(s)=chitin elicitor receptor kinase 1%2C chitinelicitor receptor kinase-1%2C LysM receptor-like kinase 9;Oryzabase Gene Symbol Synonym(s)=OsCERK1%2C CERK1%2C OsLysM-RLK9%2C Os-CERK1%2C Os-LysM-RLK9%2C OsLysMRLK9;Oryzabase Gene Name Synonym(s)=chitin elicitor receptor kinase 1%2C chitinelicitor receptor kinase-1%2C LysM receptor-like kinase 9;Note=LysM receptor-like kinase%2C Chitin elicitor signaling;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine- / dual-specificity protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Manual Curation=November 9%2C 2010;Literature_PMID=21070404;Oryzabase=10919;TENOR=Os08t0538300-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	26909127	26909178	.	+	.	Parent=Os08t0538300-01
Chr08	irgsp1_rep	CDS	26909179	26909839	.	+	0	Parent=Os08t0538300-01
Chr08	irgsp1_rep	CDS	26910603	26910638	.	+	2	Parent=Os08t0538300-01
Chr08	irgsp1_rep	CDS	26910884	26911033	.	+	2	Parent=Os08t0538300-01
Chr08	irgsp1_rep	CDS	26911440	26911630	.	+	2	Parent=Os08t0538300-01
Chr08	irgsp1_rep	CDS	26911833	26911922	.	+	0	Parent=Os08t0538300-01
Chr08	irgsp1_rep	CDS	26912075	26912168	.	+	0	Parent=Os08t0538300-01
Chr08	irgsp1_rep	CDS	26912250	26912401	.	+	2	Parent=Os08t0538300-01
Chr08	irgsp1_rep	CDS	26912492	26912589	.	+	0	Parent=Os08t0538300-01
Chr08	irgsp1_rep	CDS	26912702	26912840	.	+	1	Parent=Os08t0538300-01
Chr08	irgsp1_rep	CDS	26912928	26913026	.	+	0	Parent=Os08t0538300-01
Chr08	irgsp1_rep	CDS	26913125	26913289	.	+	0	Parent=Os08t0538300-01
Chr08	irgsp1_rep	three_prime_UTR	26913290	26913492	.	+	.	Parent=Os08t0538300-01
Chr08	irgsp1_rep	mRNA	26909433	26913494	.	+	.	ID=Os08t0538300-02;Name=Os08t0538300-02;Locus_id=Os08g0538300;Oryzabase Gene Symbol Synonym(s)=OsCERK1%2C CERK1%2C OsLysM-RLK9%2C Os-CERK1%2C Os-LysM-RLK9%2C OsLysMRLK9;Oryzabase Gene Name Synonym(s)=chitin elicitor receptor kinase 1%2C chitinelicitor receptor kinase-1%2C LysM receptor-like kinase 9;Note=Similar to LysM receptor-like kinase.;Transcript_evidence=AK112001 (DDBJ%2C Best hit);ORF_evidence=B6SWW8 (UniProt);NIAS_FLcDNA=001-035-B08;Oryzabase=10919;Expression=AK112001;TENOR=Os08t0538300-02;KEGG=Os08t0538300-02
Chr08	irgsp1_rep	five_prime_UTR	26909433	26909433	.	+	.	Parent=Os08t0538300-02
Chr08	irgsp1_rep	CDS	26909434	26909839	.	+	0	Parent=Os08t0538300-02
Chr08	irgsp1_rep	CDS	26910603	26910639	.	+	2	Parent=Os08t0538300-02
Chr08	irgsp1_rep	CDS	26910884	26910974	.	+	1	Parent=Os08t0538300-02
Chr08	irgsp1_rep	three_prime_UTR	26910975	26911033	.	+	.	Parent=Os08t0538300-02
Chr08	irgsp1_rep	three_prime_UTR	26911437	26911630	.	+	.	Parent=Os08t0538300-02
Chr08	irgsp1_rep	three_prime_UTR	26911833	26911922	.	+	.	Parent=Os08t0538300-02
Chr08	irgsp1_rep	three_prime_UTR	26912075	26912168	.	+	.	Parent=Os08t0538300-02
Chr08	irgsp1_rep	three_prime_UTR	26912250	26912401	.	+	.	Parent=Os08t0538300-02
Chr08	irgsp1_rep	three_prime_UTR	26912492	26912589	.	+	.	Parent=Os08t0538300-02
Chr08	irgsp1_rep	three_prime_UTR	26912702	26912840	.	+	.	Parent=Os08t0538300-02
Chr08	irgsp1_rep	three_prime_UTR	26912928	26913026	.	+	.	Parent=Os08t0538300-02
Chr08	irgsp1_rep	three_prime_UTR	26913125	26913494	.	+	.	Parent=Os08t0538300-02
Chr08	irgsp1_rep	mRNA	26918197	26921534	.	+	.	ID=Os08t0538600-01;Name=Os08t0538600-01;Locus_id=Os08g0538600;Note=Stress up-regulated Nod 19 family protein.;Transcript_evidence=AK067831 (DDBJ%2C Best hit);ORF_evidence=B6SZN0 (UniProt);InterPro=Stress up-regulated Nod 19 (IPR011692);NIAS_FLcDNA=J013121M08;Expression=AK067831;TENOR=Os08t0538600-01;KEGG=Os08t0538600-01
Chr08	irgsp1_rep	five_prime_UTR	26918197	26918231	.	+	.	Parent=Os08t0538600-01
Chr08	irgsp1_rep	five_prime_UTR	26919490	26919501	.	+	.	Parent=Os08t0538600-01
Chr08	irgsp1_rep	CDS	26919502	26920317	.	+	0	Parent=Os08t0538600-01
Chr08	irgsp1_rep	CDS	26920450	26920608	.	+	0	Parent=Os08t0538600-01
Chr08	irgsp1_rep	CDS	26920763	26921027	.	+	0	Parent=Os08t0538600-01
Chr08	irgsp1_rep	CDS	26921104	26921138	.	+	2	Parent=Os08t0538600-01
Chr08	irgsp1_rep	three_prime_UTR	26921139	26921534	.	+	.	Parent=Os08t0538600-01
Chr08	irgsp1_rep	mRNA	26922222	26928300	.	-	.	ID=Os08t0538700-01;Name=Os08t0538700-01;Locus_id=Os08g0538700;RAP-DB Gene Symbol Synonym(s)=OsRBR1;RAP-DB Gene Name Synonym(s)=RETINOBLASTOMA-RELATED 1;Oryzabase Gene Symbol Synonym(s)=Orysa%3BRb2%2C RBR2%2C OsRBR1;Oryzabase Gene Name Synonym(s)=retinoblastoma protein homolog 2%2C etinoblastoma-related 2%2C retinoblastoma-related protein-1;Note=Retinoblastoma-related protein%2C Control of inner floral organ formation%2C Establishment and maintenance of floral meristem function;Transcript_evidence=AK241627;ORF_evidence=Q84QM3;GO=Biological Process: regulation of cell cycle (GO:0051726),Cellular Component: nucleus (GO:0005634);InterPro=Cyclin-like superfamily (IPR036915),Retinoblastoma-associated protein%2C N-terminal (IPR024599),Retinoblastoma-associated protein%2C A-box (IPR002720),Retinoblastoma-associated protein%2C B-box (IPR002719),Retinoblastoma-associated protein%2C C-terminal (IPR015030);NIAS_FLcDNA=J065187G05;Manual Curation=September 24%2C 2019;Literature_PMID=31548267,17389586;Oryzabase=13320;TENOR=Os08t0538700-01;Subcellular location=nucleus (GO:0005634)
Chr08	irgsp1_rep	five_prime_UTR	26928122	26928300	.	-	.	Parent=Os08t0538700-01
Chr08	irgsp1_rep	CDS	26928005	26928121	.	-	0	Parent=Os08t0538700-01
Chr08	irgsp1_rep	CDS	26927147	26927251	.	-	0	Parent=Os08t0538700-01
Chr08	irgsp1_rep	CDS	26926905	26927032	.	-	0	Parent=Os08t0538700-01
Chr08	irgsp1_rep	CDS	26926720	26926816	.	-	1	Parent=Os08t0538700-01
Chr08	irgsp1_rep	CDS	26926559	26926605	.	-	0	Parent=Os08t0538700-01
Chr08	irgsp1_rep	CDS	26926142	26926334	.	-	1	Parent=Os08t0538700-01
Chr08	irgsp1_rep	CDS	26925972	26926038	.	-	0	Parent=Os08t0538700-01
Chr08	irgsp1_rep	CDS	26925680	26925862	.	-	2	Parent=Os08t0538700-01
Chr08	irgsp1_rep	CDS	26925380	26925573	.	-	2	Parent=Os08t0538700-01
Chr08	irgsp1_rep	CDS	26924421	26925297	.	-	0	Parent=Os08t0538700-01
Chr08	irgsp1_rep	CDS	26924190	26924325	.	-	2	Parent=Os08t0538700-01
Chr08	irgsp1_rep	CDS	26924032	26924104	.	-	1	Parent=Os08t0538700-01
Chr08	irgsp1_rep	CDS	26923714	26923890	.	-	0	Parent=Os08t0538700-01
Chr08	irgsp1_rep	CDS	26923461	26923580	.	-	0	Parent=Os08t0538700-01
Chr08	irgsp1_rep	CDS	26923237	26923372	.	-	0	Parent=Os08t0538700-01
Chr08	irgsp1_rep	CDS	26923040	26923152	.	-	2	Parent=Os08t0538700-01
Chr08	irgsp1_rep	CDS	26922795	26922910	.	-	0	Parent=Os08t0538700-01
Chr08	irgsp1_rep	CDS	26922548	26922701	.	-	1	Parent=Os08t0538700-01
Chr08	irgsp1_rep	three_prime_UTR	26922222	26922547	.	-	.	Parent=Os08t0538700-01
Chr08	irgsp1_rep	mRNA	26922241	26928260	.	-	.	ID=Os08t0538700-02;Name=Os08t0538700-02;Locus_id=Os08g0538700;Oryzabase Gene Symbol Synonym(s)=Orysa%3BRb2%2C RBR2%2C OsRBR1;Oryzabase Gene Name Synonym(s)=retinoblastoma protein homolog 2%2C etinoblastoma-related 2%2C retinoblastoma-related protein-1;Note=Retinoblastoma-related protein.;Transcript_evidence=AK240830 (DDBJ%2C Best hit);ORF_evidence=Q84QM3 (UniProt);GO=Biological Process: regulation of cell cycle (GO:0051726),Cellular Component: nucleus (GO:0005634);InterPro=Retinoblastoma-associated protein%2C B-box (IPR002719),Retinoblastoma-associated protein%2C A-box (IPR002720),Cyclin-like (IPR013763),Domain of unknown function DUF3452%2C retinoblastoma-associated (IPR024599);NIAS_FLcDNA=J065014C16;Oryzabase=13320;TENOR=Os08t0538700-02
Chr08	irgsp1_rep	five_prime_UTR	26928122	26928260	.	-	.	Parent=Os08t0538700-02
Chr08	irgsp1_rep	CDS	26928005	26928121	.	-	0	Parent=Os08t0538700-02
Chr08	irgsp1_rep	CDS	26927147	26927251	.	-	0	Parent=Os08t0538700-02
Chr08	irgsp1_rep	CDS	26926905	26927032	.	-	0	Parent=Os08t0538700-02
Chr08	irgsp1_rep	CDS	26926720	26926816	.	-	1	Parent=Os08t0538700-02
Chr08	irgsp1_rep	CDS	26926559	26926605	.	-	0	Parent=Os08t0538700-02
Chr08	irgsp1_rep	CDS	26926142	26926334	.	-	1	Parent=Os08t0538700-02
Chr08	irgsp1_rep	CDS	26925972	26926038	.	-	0	Parent=Os08t0538700-02
Chr08	irgsp1_rep	CDS	26925680	26925862	.	-	2	Parent=Os08t0538700-02
Chr08	irgsp1_rep	CDS	26925380	26925573	.	-	2	Parent=Os08t0538700-02
Chr08	irgsp1_rep	CDS	26924421	26925297	.	-	0	Parent=Os08t0538700-02
Chr08	irgsp1_rep	CDS	26924190	26924325	.	-	2	Parent=Os08t0538700-02
Chr08	irgsp1_rep	CDS	26924032	26924104	.	-	1	Parent=Os08t0538700-02
Chr08	irgsp1_rep	CDS	26923714	26923890	.	-	0	Parent=Os08t0538700-02
Chr08	irgsp1_rep	CDS	26923461	26923580	.	-	0	Parent=Os08t0538700-02
Chr08	irgsp1_rep	CDS	26923237	26923372	.	-	0	Parent=Os08t0538700-02
Chr08	irgsp1_rep	CDS	26923040	26923152	.	-	2	Parent=Os08t0538700-02
Chr08	irgsp1_rep	CDS	26922795	26922910	.	-	0	Parent=Os08t0538700-02
Chr08	irgsp1_rep	CDS	26922548	26922701	.	-	1	Parent=Os08t0538700-02
Chr08	irgsp1_rep	three_prime_UTR	26922241	26922547	.	-	.	Parent=Os08t0538700-02
Chr08	irgsp1_rep	mRNA	26932311	26935259	.	-	.	ID=Os08t0538800-01;Name=Os08t0538800-01;Locus_id=Os08g0538800;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK070462 (DDBJ%2C Best hit);ORF_evidence=B9EYH1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J023049D08;Expression=AK070462;TENOR=Os08t0538800-01;KEGG=Os08t0538800-01
Chr08	irgsp1_rep	five_prime_UTR	26935052	26935259	.	-	.	Parent=Os08t0538800-01
Chr08	irgsp1_rep	five_prime_UTR	26934168	26934277	.	-	.	Parent=Os08t0538800-01
Chr08	irgsp1_rep	CDS	26932422	26934167	.	-	0	Parent=Os08t0538800-01
Chr08	irgsp1_rep	three_prime_UTR	26932311	26932421	.	-	.	Parent=Os08t0538800-01
Chr08	irgsp1_rep	mRNA	26938833	26942097	.	-	.	ID=Os08t0539100-01;Name=Os08t0539100-01;Locus_id=Os08g0539100;Note=Zinc finger%2C DHHC-type domain containing protein.;Transcript_evidence=AK073653 (DDBJ%2C Best hit);ORF_evidence=XP_002877006.1 (RefSeq);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C DHHC-type%2C palmitoyltransferase (IPR001594);NIAS_FLcDNA=J033048F17;Expression=AK073653;TENOR=Os08t0539100-01;KEGG=Os08t0539100-01
Chr08	irgsp1_rep	five_prime_UTR	26941990	26942097	.	-	.	Parent=Os08t0539100-01
Chr08	irgsp1_rep	five_prime_UTR	26941736	26941901	.	-	.	Parent=Os08t0539100-01
Chr08	irgsp1_rep	CDS	26941628	26941735	.	-	0	Parent=Os08t0539100-01
Chr08	irgsp1_rep	CDS	26940704	26940886	.	-	0	Parent=Os08t0539100-01
Chr08	irgsp1_rep	CDS	26940047	26940352	.	-	0	Parent=Os08t0539100-01
Chr08	irgsp1_rep	CDS	26939677	26939910	.	-	0	Parent=Os08t0539100-01
Chr08	irgsp1_rep	CDS	26939138	26939581	.	-	0	Parent=Os08t0539100-01
Chr08	irgsp1_rep	three_prime_UTR	26938833	26939137	.	-	.	Parent=Os08t0539100-01
Chr08	irgsp1_rep	mRNA	26945672	26946647	.	+	.	ID=Os08t0539200-01;Name=Os08t0539200-01;Locus_id=Os08g0539200;Note=Conserved hypothetical protein.;Transcript_evidence=AK109065 (DDBJ%2C Best hit);ORF_evidence=A2YXK2 (UniProt);NIAS_FLcDNA=002-154-F09;Expression=AK109065;TENOR=Os08t0539200-01;KEGG=Os08t0539200-01
Chr08	irgsp1_rep	five_prime_UTR	26945672	26945907	.	+	.	Parent=Os08t0539200-01
Chr08	irgsp1_rep	CDS	26945908	26946423	.	+	0	Parent=Os08t0539200-01
Chr08	irgsp1_rep	three_prime_UTR	26946424	26946647	.	+	.	Parent=Os08t0539200-01
Chr08	irgsp1_rep	mRNA	26948601	26953317	.	+	.	ID=Os08t0539300-01;Name=Os08t0539300-01;Locus_id=Os08g0539300;RAP-DB Gene Symbol Synonym(s)=OsRFI2;RAP-DB Gene Name Synonym(s)=RED AND FAR-RED INSENSITIVE 2;CGSNL Gene Symbol=RFI2;CGSNL Gene Name=RED AND FAR-RED INSENSITIVE 2;Oryzabase Gene Symbol Synonym(s)=OsRFPH2-10%2C RFPH2-10%2C OsRFI2;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPH2-10%2C RING-H2 protein 10%2C RING-H2 Finger E3 Ubiquitin Ligase 10;Note=C3HC4-type zinc finger protein%2C Target of miR528%2C Regulation of flowering under LD conditions;Transcript_evidence=AK067119;ORF_evidence=Q69UA1;InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841);NIAS_FLcDNA=J013095B01;Manual Curation=May 13%2C 2019;Literature_PMID=31059825;Oryzabase=11771;Expression=AK067119;TENOR=Os08t0539300-01;KEGG=Os08t0539300-01
Chr08	irgsp1_rep	five_prime_UTR	26948601	26948722	.	+	.	Parent=Os08t0539300-01
Chr08	irgsp1_rep	CDS	26948723	26948873	.	+	0	Parent=Os08t0539300-01
Chr08	irgsp1_rep	CDS	26949984	26950147	.	+	2	Parent=Os08t0539300-01
Chr08	irgsp1_rep	CDS	26950402	26950460	.	+	0	Parent=Os08t0539300-01
Chr08	irgsp1_rep	CDS	26951728	26951753	.	+	1	Parent=Os08t0539300-01
Chr08	irgsp1_rep	CDS	26951838	26952204	.	+	2	Parent=Os08t0539300-01
Chr08	irgsp1_rep	CDS	26952528	26953035	.	+	1	Parent=Os08t0539300-01
Chr08	irgsp1_rep	three_prime_UTR	26953036	26953317	.	+	.	Parent=Os08t0539300-01
Chr08	irgsp1_rep	mRNA	26968546	26978236	.	-	.	ID=Os08t0539400-01;Name=Os08t0539400-01;Locus_id=Os08g0539400;Note=Similar to Resistance protein T10rga2-1A.;Transcript_evidence=AK240741 (DDBJ%2C Best hit);ORF_evidence=NP_001062377.1 (RefSeq);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J043036M24;TENOR=Os08t0539400-01;KEGG=Os08t0539400-01
Chr08	irgsp1_rep	five_prime_UTR	26978130	26978236	.	-	.	Parent=Os08t0539400-01
Chr08	irgsp1_rep	CDS	26977074	26978129	.	-	0	Parent=Os08t0539400-01
Chr08	irgsp1_rep	CDS	26974558	26975184	.	-	0	Parent=Os08t0539400-01
Chr08	irgsp1_rep	CDS	26968958	26970892	.	-	0	Parent=Os08t0539400-01
Chr08	irgsp1_rep	three_prime_UTR	26968546	26968957	.	-	.	Parent=Os08t0539400-01
Chr08	irgsp1_rep	mRNA	26982655	26986691	.	+	.	ID=Os08t0539600-01;Name=Os08t0539600-01;Locus_id=Os08g0539600;Oryzabase Gene Symbol Synonym(s)=Xbos252%2C XBOS252;Note=Similar to Ankyrin repeat domain-containing protein 2.;Transcript_evidence=AK108758 (DDBJ%2C Best hit);ORF_evidence=B6U990 (UniProt);NIAS_FLcDNA=002-150-G03;Oryzabase=21678;TENOR=Os08t0539600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	26982655	26982707	.	+	.	Parent=Os08t0539600-01
Chr08	irgsp1_rep	CDS	26982708	26982750	.	+	0	Parent=Os08t0539600-01
Chr08	irgsp1_rep	CDS	26983495	26983607	.	+	2	Parent=Os08t0539600-01
Chr08	irgsp1_rep	CDS	26983849	26984043	.	+	0	Parent=Os08t0539600-01
Chr08	irgsp1_rep	CDS	26984154	26984302	.	+	0	Parent=Os08t0539600-01
Chr08	irgsp1_rep	CDS	26984387	26984521	.	+	1	Parent=Os08t0539600-01
Chr08	irgsp1_rep	CDS	26984536	26984542	.	+	1	Parent=Os08t0539600-01
Chr08	irgsp1_rep	three_prime_UTR	26984543	26984549	.	+	.	Parent=Os08t0539600-01
Chr08	irgsp1_rep	three_prime_UTR	26985107	26985199	.	+	.	Parent=Os08t0539600-01
Chr08	irgsp1_rep	three_prime_UTR	26986107	26986246	.	+	.	Parent=Os08t0539600-01
Chr08	irgsp1_rep	three_prime_UTR	26986335	26986691	.	+	.	Parent=Os08t0539600-01
Chr08	irgsp1_rep	mRNA	26982655	26986692	.	+	.	ID=Os08t0539600-02;Name=Os08t0539600-02;Locus_id=Os08g0539600;RAP-DB Gene Symbol Synonym(s)=Xbos252%2C XBOS252;Oryzabase Gene Symbol Synonym(s)=Xbos252%2C XBOS252;Note=Xb25 paralog;Transcript_evidence=Inferred from literature;ORF_evidence=Q69U94;GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat-containing domain superfamily (IPR036770),STI1 domain (IPR041243),Ankyrin repeat-containing domain (IPR020683),Ankyrin repeat (IPR002110);Manual Curation=August 4%2C 2020;Literature_PMID=23206229;Oryzabase=21678
Chr08	irgsp1_rep	five_prime_UTR	26982655	26982707	.	+	.	Parent=Os08t0539600-02
Chr08	irgsp1_rep	CDS	26982708	26982750	.	+	0	Parent=Os08t0539600-02
Chr08	irgsp1_rep	CDS	26983495	26983607	.	+	2	Parent=Os08t0539600-02
Chr08	irgsp1_rep	CDS	26983849	26984043	.	+	0	Parent=Os08t0539600-02
Chr08	irgsp1_rep	CDS	26984154	26984302	.	+	0	Parent=Os08t0539600-02
Chr08	irgsp1_rep	CDS	26984387	26984549	.	+	1	Parent=Os08t0539600-02
Chr08	irgsp1_rep	CDS	26985107	26985199	.	+	0	Parent=Os08t0539600-02
Chr08	irgsp1_rep	CDS	26986107	26986246	.	+	0	Parent=Os08t0539600-02
Chr08	irgsp1_rep	CDS	26986335	26986434	.	+	1	Parent=Os08t0539600-02
Chr08	irgsp1_rep	three_prime_UTR	26986435	26986692	.	+	.	Parent=Os08t0539600-02
Chr08	irgsp1_rep	mRNA	26989664	26997637	.	+	.	ID=Os08t0539700-01;Name=Os08t0539700-01;Locus_id=Os08g0539700;CGSNL Gene Symbol=PIBH8;CGSNL Gene Name=PYRICULARIA ORYZAE RESISTANCE  BH8;Oryzabase Gene Symbol Synonym(s)=Pib-H8%2C PibH8;Oryzabase Gene Name Synonym(s)=Pyricularia oryzae resistance from Lemont%2C Magnaporthe grisea resistance from Lemont%2C Magnaporthe grisea resistance-b-H8%2C Pib homologue on Chromosome 8;Note=NB-ARC domain containing protein.;Transcript_evidence=AK065693 (DDBJ%2C Best hit);ORF_evidence=A3BVB1 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013043I01;Oryzabase=13058;Expression=AK065693;TENOR=Os08t0539700-01;KEGG=Os08t0539700-01
Chr08	irgsp1_rep	five_prime_UTR	26989664	26989743	.	+	.	Parent=Os08t0539700-01
Chr08	irgsp1_rep	CDS	26989744	26990814	.	+	0	Parent=Os08t0539700-01
Chr08	irgsp1_rep	CDS	26991371	26992150	.	+	0	Parent=Os08t0539700-01
Chr08	irgsp1_rep	CDS	26995541	26997370	.	+	0	Parent=Os08t0539700-01
Chr08	irgsp1_rep	three_prime_UTR	26997371	26997637	.	+	.	Parent=Os08t0539700-01
Chr08	irgsp1_rep	mRNA	26989668	26990649	.	+	.	ID=Os08t0539700-02;Name=Os08t0539700-02;Locus_id=Os08g0539700;CGSNL Gene Symbol=PIBH8;CGSNL Gene Name=PYRICULARIA ORYZAE RESISTANCE  BH8;Oryzabase Gene Symbol Synonym(s)=Pib-H8%2C PibH8;Oryzabase Gene Name Synonym(s)=Pyricularia oryzae resistance from Lemont%2C Magnaporthe grisea resistance from Lemont%2C Magnaporthe grisea resistance-b-H8%2C Pib homologue on Chromosome 8;Note=Hypothetical conserved gene.;Transcript_evidence=AK099855 (DDBJ%2C Best hit);ORF_evidence=A3BVB1 (UniProt);NIAS_FLcDNA=J013110K12;Oryzabase=13058;Expression=AK099855;TENOR=Os08t0539700-02;KEGG=Os08t0539700-02
Chr08	irgsp1_rep	five_prime_UTR	26989668	26989743	.	+	.	Parent=Os08t0539700-02
Chr08	irgsp1_rep	CDS	26989744	26990649	.	+	0	Parent=Os08t0539700-02
Chr08	irgsp1_rep	mRNA	26991882	26997564	.	+	.	ID=Os08t0539700-03;Name=Os08t0539700-03;Locus_id=Os08g0539700;CGSNL Gene Symbol=PIBH8;CGSNL Gene Name=PYRICULARIA ORYZAE RESISTANCE  BH8;Oryzabase Gene Symbol Synonym(s)=Pib-H8%2C PibH8;Oryzabase Gene Name Synonym(s)=Pyricularia oryzae resistance from Lemont%2C Magnaporthe grisea resistance from Lemont%2C Magnaporthe grisea resistance-b-H8%2C Pib homologue on Chromosome 8;Note=Hypothetical conserved gene.;Transcript_evidence=AK065372 (DDBJ%2C Best hit);ORF_evidence=B8B8V0 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013021P11;Oryzabase=13058;Expression=AK065372;TENOR=Os08t0539700-03;KEGG=Os08t0539700-03
Chr08	irgsp1_rep	five_prime_UTR	26991882	26991892	.	+	.	Parent=Os08t0539700-03
Chr08	irgsp1_rep	CDS	26991893	26992150	.	+	0	Parent=Os08t0539700-03
Chr08	irgsp1_rep	CDS	26995541	26997370	.	+	0	Parent=Os08t0539700-03
Chr08	irgsp1_rep	three_prime_UTR	26997371	26997564	.	+	.	Parent=Os08t0539700-03
Chr08	irgsp1_rep	mRNA	27016926	27017251	.	-	.	ID=Os08t0539800-00;Name=Os08t0539800-00;Locus_id=Os08g0539800;Note=Hypothetical protein.;Transcript_evidence=BT086918 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0539800-00
Chr08	irgsp1_rep	five_prime_UTR	27017250	27017251	.	-	.	Parent=Os08t0539800-00
Chr08	irgsp1_rep	CDS	27017010	27017249	.	-	0	Parent=Os08t0539800-00
Chr08	irgsp1_rep	three_prime_UTR	27016926	27017009	.	-	.	Parent=Os08t0539800-00
Chr08	irgsp1_rep	mRNA	27016951	27027229	.	+	.	ID=Os08t0539900-00;Name=Os08t0539900-00;Locus_id=Os08g0539900;Note=NB-ARC domain containing protein.;Transcript_evidence=AK335092 (DDBJ);ORF_evidence=Q69U98 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os08t0539900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	27016951	27016961	.	+	.	Parent=Os08t0539900-00
Chr08	irgsp1_rep	CDS	27016962	27018056	.	+	0	Parent=Os08t0539900-00
Chr08	irgsp1_rep	CDS	27025394	27027229	.	+	0	Parent=Os08t0539900-00
Chr08	irgsp1_rep	mRNA	27027764	27032155	.	-	.	ID=Os08t0540000-01;Name=Os08t0540000-01;Locus_id=Os08g0540000;Note=Protein of unknown function DUF914%2C eukaryotic family protein.;Transcript_evidence=AK070813 (DDBJ%2C Best hit);ORF_evidence=B6U001 (UniProt);InterPro=Protein of unknown function DUF914%2C eukaryotic (IPR009262);NIAS_FLcDNA=J023073C13;Expression=AK070813;TENOR=Os08t0540000-01;KEGG=Os08t0540000-01
Chr08	irgsp1_rep	five_prime_UTR	27032001	27032155	.	-	.	Parent=Os08t0540000-01
Chr08	irgsp1_rep	CDS	27031847	27032000	.	-	0	Parent=Os08t0540000-01
Chr08	irgsp1_rep	CDS	27031104	27031198	.	-	2	Parent=Os08t0540000-01
Chr08	irgsp1_rep	CDS	27030446	27030503	.	-	0	Parent=Os08t0540000-01
Chr08	irgsp1_rep	CDS	27030122	27030316	.	-	2	Parent=Os08t0540000-01
Chr08	irgsp1_rep	CDS	27029919	27029995	.	-	2	Parent=Os08t0540000-01
Chr08	irgsp1_rep	CDS	27029685	27029767	.	-	0	Parent=Os08t0540000-01
Chr08	irgsp1_rep	CDS	27029410	27029461	.	-	1	Parent=Os08t0540000-01
Chr08	irgsp1_rep	CDS	27028640	27028708	.	-	0	Parent=Os08t0540000-01
Chr08	irgsp1_rep	CDS	27028402	27028488	.	-	0	Parent=Os08t0540000-01
Chr08	irgsp1_rep	CDS	27028259	27028323	.	-	0	Parent=Os08t0540000-01
Chr08	irgsp1_rep	CDS	27028061	27028160	.	-	1	Parent=Os08t0540000-01
Chr08	irgsp1_rep	three_prime_UTR	27027764	27028060	.	-	.	Parent=Os08t0540000-01
Chr08	irgsp1_rep	mRNA	27034938	27038786	.	+	.	ID=Os08t0540100-01;Name=Os08t0540100-01;Locus_id=Os08g0540100;Note=Similar to Biotin synthase (EC 2.8.1.6) (Biotin synthetase).;Transcript_evidence=AK101236 (DDBJ%2C Best hit);ORF_evidence=NP_001150188.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Biological Process: biotin biosynthetic process (GO:0009102),Biological Process: cofactor metabolic process (GO:0051186),Molecular Function: catalytic activity (GO:0003824),Molecular Function: biotin synthase activity (GO:0004076),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=Biotin synthase (IPR002684),Elongator protein 3/MiaB/NifB (IPR006638),Radical SAM (IPR007197),Biotin/thiamin synthesis-associated protein (IPR010722),Aldolase-type TIM barrel (IPR013785),Biotin synthase-like (IPR024177);NIAS_FLcDNA=J033031K02;Expression=AK101236;TENOR=Os08t0540100-01;KEGG=Os08t0540100-01 (EC:2.8.1.6)
Chr08	irgsp1_rep	five_prime_UTR	27034938	27035028	.	+	.	Parent=Os08t0540100-01
Chr08	irgsp1_rep	CDS	27035029	27035241	.	+	0	Parent=Os08t0540100-01
Chr08	irgsp1_rep	CDS	27036587	27036766	.	+	0	Parent=Os08t0540100-01
Chr08	irgsp1_rep	CDS	27036942	27037048	.	+	0	Parent=Os08t0540100-01
Chr08	irgsp1_rep	CDS	27037398	27037603	.	+	1	Parent=Os08t0540100-01
Chr08	irgsp1_rep	CDS	27037991	27038130	.	+	2	Parent=Os08t0540100-01
Chr08	irgsp1_rep	CDS	27038280	27038579	.	+	0	Parent=Os08t0540100-01
Chr08	irgsp1_rep	three_prime_UTR	27038580	27038786	.	+	.	Parent=Os08t0540100-01
Chr08	irgsp1_rep	mRNA	27034995	27038838	.	+	.	ID=Os08t0540100-02;Name=Os08t0540100-02;Locus_id=Os08g0540100;Note=Similar to Biotin synthase (EC 2.8.1.6) (Biotin synthetase).;Transcript_evidence=AK059296 (DDBJ%2C Best hit);ORF_evidence=NP_001150188.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Biological Process: biotin biosynthetic process (GO:0009102),Biological Process: cofactor metabolic process (GO:0051186),Molecular Function: catalytic activity (GO:0003824),Molecular Function: biotin synthase activity (GO:0004076),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=Biotin synthase (IPR002684),Elongator protein 3/MiaB/NifB (IPR006638),Radical SAM (IPR007197),Biotin/thiamin synthesis-associated protein (IPR010722),Aldolase-type TIM barrel (IPR013785),Biotin synthase-like (IPR024177);NIAS_FLcDNA=001-025-E10;Expression=AK059296;TENOR=Os08t0540100-02;KEGG=Os08t0540100-02 (EC:2.8.1.6)
Chr08	irgsp1_rep	five_prime_UTR	27034995	27035028	.	+	.	Parent=Os08t0540100-02
Chr08	irgsp1_rep	CDS	27035029	27035241	.	+	0	Parent=Os08t0540100-02
Chr08	irgsp1_rep	CDS	27036587	27036766	.	+	0	Parent=Os08t0540100-02
Chr08	irgsp1_rep	CDS	27036942	27037048	.	+	0	Parent=Os08t0540100-02
Chr08	irgsp1_rep	CDS	27037398	27037603	.	+	1	Parent=Os08t0540100-02
Chr08	irgsp1_rep	CDS	27037991	27038130	.	+	2	Parent=Os08t0540100-02
Chr08	irgsp1_rep	CDS	27038280	27038579	.	+	0	Parent=Os08t0540100-02
Chr08	irgsp1_rep	three_prime_UTR	27038580	27038838	.	+	.	Parent=Os08t0540100-02
Chr08	irgsp1_rep	mRNA	27043373	27043691	.	+	.	ID=Os08t0540200-00;Name=Os08t0540200-00;Locus_id=Os08g0540200;Note=Hypothetical protein.;Transcript_evidence=EU958344 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0540200-00
Chr08	irgsp1_rep	CDS	27043373	27043597	.	+	0	Parent=Os08t0540200-00
Chr08	irgsp1_rep	three_prime_UTR	27043598	27043691	.	+	.	Parent=Os08t0540200-00
Chr08	irgsp1_rep	mRNA	27047369	27054956	.	+	.	ID=Os08t0540300-01;Name=Os08t0540300-01;Locus_id=Os08g0540300;Note=Zinc finger%2C C6HC-type domain containing protein.;Transcript_evidence=AK101429 (DDBJ%2C Best hit);ORF_evidence=Q01IA7 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RanBP2-type (IPR001876),Zinc finger%2C CCHC-type (IPR001878),Zinc finger%2C C6HC-type (IPR002867),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J033038J15;Expression=AK101429;TENOR=Os08t0540300-01;KEGG=Os08t0540300-01
Chr08	irgsp1_rep	five_prime_UTR	27047369	27047534	.	+	.	Parent=Os08t0540300-01
Chr08	irgsp1_rep	CDS	27047535	27047765	.	+	0	Parent=Os08t0540300-01
Chr08	irgsp1_rep	CDS	27048860	27048981	.	+	0	Parent=Os08t0540300-01
Chr08	irgsp1_rep	CDS	27049532	27049634	.	+	1	Parent=Os08t0540300-01
Chr08	irgsp1_rep	CDS	27049772	27049862	.	+	0	Parent=Os08t0540300-01
Chr08	irgsp1_rep	CDS	27050093	27050265	.	+	2	Parent=Os08t0540300-01
Chr08	irgsp1_rep	CDS	27050415	27050516	.	+	0	Parent=Os08t0540300-01
Chr08	irgsp1_rep	CDS	27050621	27050709	.	+	0	Parent=Os08t0540300-01
Chr08	irgsp1_rep	CDS	27051454	27051561	.	+	1	Parent=Os08t0540300-01
Chr08	irgsp1_rep	CDS	27051650	27051740	.	+	1	Parent=Os08t0540300-01
Chr08	irgsp1_rep	CDS	27051950	27052039	.	+	0	Parent=Os08t0540300-01
Chr08	irgsp1_rep	CDS	27052653	27052700	.	+	0	Parent=Os08t0540300-01
Chr08	irgsp1_rep	CDS	27052829	27052900	.	+	0	Parent=Os08t0540300-01
Chr08	irgsp1_rep	CDS	27052998	27053091	.	+	0	Parent=Os08t0540300-01
Chr08	irgsp1_rep	CDS	27053182	27053329	.	+	2	Parent=Os08t0540300-01
Chr08	irgsp1_rep	CDS	27054203	27054464	.	+	1	Parent=Os08t0540300-01
Chr08	irgsp1_rep	three_prime_UTR	27054465	27054956	.	+	.	Parent=Os08t0540300-01
Chr08	irgsp1_rep	mRNA	27052844	27053297	.	-	.	ID=Os08t0540350-00;Name=Os08t0540350-00;Locus_id=Os08g0540350;Note=Non-protein coding transcript.;Transcript_evidence=AM939994 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0540350-00
Chr08	irgsp1_rep	exon	27053180	27053297	.	-	.	Parent=Os08t0540350-00
Chr08	irgsp1_rep	exon	27052984	27053089	.	-	.	Parent=Os08t0540350-00
Chr08	irgsp1_rep	exon	27052844	27052889	.	-	.	Parent=Os08t0540350-00
Chr08	irgsp1_rep	mRNA	27055091	27059334	.	-	.	ID=Os08t0540400-01;Name=Os08t0540400-01;Locus_id=Os08g0540400;RAP-DB Gene Symbol Synonym(s)=OsCPK21;RAP-DB Gene Name Synonym(s)=calcium-dependent protein kinase 21;CGSNL Gene Symbol=CDPK21;CGSNL Gene Name=CALCIUM-DEPENDENT PROTEIN KINASE 21;Oryzabase Gene Symbol Synonym(s)=OsCDPK21%2C OsCPK21;Oryzabase Gene Name Synonym(s)=calcium-dependent protein kinase;Note=Calcium-dependent protein kinase%2C Positive regulation in the ABA and salt stress signaling pathways%2C Salt tolerance;Transcript_evidence=AK103306;ORF_evidence=Q6ZIU9;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),EF-hand domain pair (IPR011992),Protein kinase domain (IPR000719),EF-hand domain (IPR002048),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271),EF-Hand 1%2C calcium-binding site (IPR018247);NIAS_FLcDNA=J033125E13;Manual Curation=October 27%2C 2020;Literature_PMID=28988107,21136139;Oryzabase=8072;Expression=AK103306;TENOR=Os08t0540400-01;KEGG=Os08t0540400-01 (EC:2.7.11.1);Subcellular location=plasma membrane (GO:0005886)
Chr08	irgsp1_rep	five_prime_UTR	27059213	27059334	.	-	.	Parent=Os08t0540400-01
Chr08	irgsp1_rep	CDS	27058574	27059212	.	-	0	Parent=Os08t0540400-01
Chr08	irgsp1_rep	CDS	27058328	27058453	.	-	0	Parent=Os08t0540400-01
Chr08	irgsp1_rep	CDS	27058092	27058233	.	-	0	Parent=Os08t0540400-01
Chr08	irgsp1_rep	CDS	27057395	27057547	.	-	2	Parent=Os08t0540400-01
Chr08	irgsp1_rep	CDS	27057169	27057284	.	-	2	Parent=Os08t0540400-01
Chr08	irgsp1_rep	CDS	27056916	27057083	.	-	0	Parent=Os08t0540400-01
Chr08	irgsp1_rep	CDS	27055297	27055650	.	-	0	Parent=Os08t0540400-01
Chr08	irgsp1_rep	three_prime_UTR	27055091	27055296	.	-	.	Parent=Os08t0540400-01
Chr08	irgsp1_rep	mRNA	27064824	27068182	.	+	.	ID=Os08t0540500-01;Name=Os08t0540500-01;Locus_id=Os08g0540500;Note=Bicoid-interacting 3 domain containing protein.;Transcript_evidence=AK106511 (DDBJ%2C Best hit);ORF_evidence=NP_568752.1 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Bicoid-interacting 3 (IPR010675),Bin3-type S-adenosyl-L-methionine binding domain (IPR024160);NIAS_FLcDNA=002-105-H09;Expression=AK106511;TENOR=Os08t0540500-01;KEGG=Os08t0540500-01
Chr08	irgsp1_rep	five_prime_UTR	27064824	27064947	.	+	.	Parent=Os08t0540500-01
Chr08	irgsp1_rep	CDS	27064948	27065142	.	+	0	Parent=Os08t0540500-01
Chr08	irgsp1_rep	CDS	27065943	27066057	.	+	0	Parent=Os08t0540500-01
Chr08	irgsp1_rep	CDS	27066365	27066412	.	+	2	Parent=Os08t0540500-01
Chr08	irgsp1_rep	CDS	27066514	27066766	.	+	2	Parent=Os08t0540500-01
Chr08	irgsp1_rep	CDS	27066931	27067018	.	+	1	Parent=Os08t0540500-01
Chr08	irgsp1_rep	CDS	27067125	27067190	.	+	0	Parent=Os08t0540500-01
Chr08	irgsp1_rep	CDS	27067577	27067645	.	+	0	Parent=Os08t0540500-01
Chr08	irgsp1_rep	CDS	27067734	27067847	.	+	0	Parent=Os08t0540500-01
Chr08	irgsp1_rep	three_prime_UTR	27067848	27068182	.	+	.	Parent=Os08t0540500-01
Chr08	irgsp1_rep	mRNA	27072163	27072652	.	-	.	ID=Os08t0540900-01;Name=Os08t0540900-01;Locus_id=Os08g0540900;Note=Conserved hypothetical protein.;Transcript_evidence=AK111094 (DDBJ%2C Best hit);ORF_evidence=A3BVC0 (UniProt);NIAS_FLcDNA=002-175-G06;Expression=AK111094;TENOR=Os08t0540900-01;KEGG=Os08t0540900-01
Chr08	irgsp1_rep	five_prime_UTR	27072587	27072652	.	-	.	Parent=Os08t0540900-01
Chr08	irgsp1_rep	CDS	27072335	27072586	.	-	0	Parent=Os08t0540900-01
Chr08	irgsp1_rep	three_prime_UTR	27072163	27072334	.	-	.	Parent=Os08t0540900-01
Chr08	irgsp1_rep	mRNA	27086410	27089863	.	+	.	ID=Os08t0541300-01;Name=Os08t0541300-01;Locus_id=Os08g0541300;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=AK243524 (DDBJ%2C Best hit);ORF_evidence=NP_001062386.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J100075M04;TENOR=Os08t0541300-01;KEGG=Os08t0541300-01
Chr08	irgsp1_rep	five_prime_UTR	27086410	27086425	.	+	.	Parent=Os08t0541300-01
Chr08	irgsp1_rep	CDS	27086426	27089248	.	+	0	Parent=Os08t0541300-01
Chr08	irgsp1_rep	three_prime_UTR	27089249	27089863	.	+	.	Parent=Os08t0541300-01
Chr08	irgsp1_rep	mRNA	27090851	27093340	.	+	.	ID=Os08t0541400-01;Name=Os08t0541400-01;Locus_id=Os08g0541400;Oryzabase Gene Symbol Synonym(s)=OsFKBP16-3;Oryzabase Gene Name Synonym(s)=FK506 binding protein 16-3;Note=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type domain containing protein.;Transcript_evidence=AK068255 (DDBJ%2C Best hit);ORF_evidence=XP_002881909.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457);InterPro=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type%2C domain (IPR001179),Peptidyl-prolyl cis-trans isomerase%2C FKBP-type (IPR023566);NIAS_FLcDNA=J013149F15;Oryzabase=10030;Expression=AK068255;TENOR=Os08t0541400-01;KEGG=Os08t0541400-01 (EC:5.2.1.8)
Chr08	irgsp1_rep	five_prime_UTR	27090851	27090939	.	+	.	Parent=Os08t0541400-01
Chr08	irgsp1_rep	CDS	27090940	27091353	.	+	0	Parent=Os08t0541400-01
Chr08	irgsp1_rep	CDS	27091575	27091658	.	+	0	Parent=Os08t0541400-01
Chr08	irgsp1_rep	CDS	27091744	27091793	.	+	0	Parent=Os08t0541400-01
Chr08	irgsp1_rep	CDS	27091918	27091966	.	+	1	Parent=Os08t0541400-01
Chr08	irgsp1_rep	CDS	27092713	27092787	.	+	0	Parent=Os08t0541400-01
Chr08	irgsp1_rep	CDS	27092966	27093079	.	+	0	Parent=Os08t0541400-01
Chr08	irgsp1_rep	three_prime_UTR	27093080	27093340	.	+	.	Parent=Os08t0541400-01
Chr08	irgsp1_rep	mRNA	27090890	27093340	.	+	.	ID=Os08t0541400-02;Name=Os08t0541400-02;Locus_id=Os08g0541400;Oryzabase Gene Symbol Synonym(s)=OsFKBP16-3;Oryzabase Gene Name Synonym(s)=FK506 binding protein 16-3;Note=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type domain containing protein.;Transcript_evidence=AK104009 (DDBJ%2C Best hit);ORF_evidence=XP_002881909.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457);InterPro=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type%2C domain (IPR001179),Peptidyl-prolyl cis-trans isomerase%2C FKBP-type (IPR023566);NIAS_FLcDNA=001-003-F09;Oryzabase=10030;Expression=AK104009;TENOR=Os08t0541400-02;KEGG=Os08t0541400-02 (EC:5.2.1.8)
Chr08	irgsp1_rep	five_prime_UTR	27090890	27090939	.	+	.	Parent=Os08t0541400-02
Chr08	irgsp1_rep	CDS	27090940	27091353	.	+	0	Parent=Os08t0541400-02
Chr08	irgsp1_rep	CDS	27091575	27091658	.	+	0	Parent=Os08t0541400-02
Chr08	irgsp1_rep	CDS	27091744	27091793	.	+	0	Parent=Os08t0541400-02
Chr08	irgsp1_rep	CDS	27091918	27091966	.	+	1	Parent=Os08t0541400-02
Chr08	irgsp1_rep	CDS	27092713	27092787	.	+	0	Parent=Os08t0541400-02
Chr08	irgsp1_rep	CDS	27092966	27093079	.	+	0	Parent=Os08t0541400-02
Chr08	irgsp1_rep	three_prime_UTR	27093080	27093340	.	+	.	Parent=Os08t0541400-02
Chr08	irgsp1_rep	mRNA	27103316	27109475	.	-	.	ID=Os08t0541500-01;Name=Os08t0541500-01;Locus_id=Os08g0541500;Note=Protein of unknown function DUF936%2C plant family protein.;Transcript_evidence=AK120995 (DDBJ%2C Best hit);ORF_evidence=B9G216 (UniProt);InterPro=Protein of unknown function DUF936%2C plant (IPR010341);NIAS_FLcDNA=J023043P11;Expression=AK120995;TENOR=Os08t0541500-01;KEGG=Os08t0541500-01
Chr08	irgsp1_rep	five_prime_UTR	27109111	27109475	.	-	.	Parent=Os08t0541500-01
Chr08	irgsp1_rep	five_prime_UTR	27108062	27108086	.	-	.	Parent=Os08t0541500-01
Chr08	irgsp1_rep	CDS	27107114	27108061	.	-	0	Parent=Os08t0541500-01
Chr08	irgsp1_rep	CDS	27106624	27106896	.	-	0	Parent=Os08t0541500-01
Chr08	irgsp1_rep	CDS	27106173	27106264	.	-	0	Parent=Os08t0541500-01
Chr08	irgsp1_rep	CDS	27103606	27104494	.	-	1	Parent=Os08t0541500-01
Chr08	irgsp1_rep	three_prime_UTR	27103316	27103605	.	-	.	Parent=Os08t0541500-01
Chr08	irgsp1_rep	mRNA	27103504	27108086	.	+	.	ID=Os08t0541600-00;Name=Os08t0541600-00;Locus_id=Os08g0541600;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0057h05 (Wheat FLcDNA);ORF_evidence=C4IYD3 (UniProt);TENOR=Os08t0541600-00
Chr08	irgsp1_rep	CDS	27103504	27104208	.	+	0	Parent=Os08t0541600-00
Chr08	irgsp1_rep	CDS	27104363	27104516	.	+	0	Parent=Os08t0541600-00
Chr08	irgsp1_rep	CDS	27106191	27106270	.	+	2	Parent=Os08t0541600-00
Chr08	irgsp1_rep	three_prime_UTR	27106271	27106273	.	+	.	Parent=Os08t0541600-00
Chr08	irgsp1_rep	three_prime_UTR	27106638	27106880	.	+	.	Parent=Os08t0541600-00
Chr08	irgsp1_rep	three_prime_UTR	27107092	27108086	.	+	.	Parent=Os08t0541600-00
Chr08	irgsp1_rep	mRNA	27114009	27115972	.	+	.	ID=Os08t0541700-00;Name=Os08t0541700-00;Locus_id=Os08g0541700;Note=Conserved hypothetical protein.;Transcript_evidence=EU952433 (DDBJ);ORF_evidence=Q6ZIT7 (UniProt);TENOR=Os08t0541700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	27114009	27114503	.	+	0	Parent=Os08t0541700-00
Chr08	irgsp1_rep	three_prime_UTR	27114504	27114724	.	+	.	Parent=Os08t0541700-00
Chr08	irgsp1_rep	three_prime_UTR	27115784	27115972	.	+	.	Parent=Os08t0541700-00
Chr08	irgsp1_rep	mRNA	27118803	27119345	.	+	.	ID=Os08t0541800-00;Name=Os08t0541800-00;Locus_id=Os08g0541800;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6ZIT5 (UniProt);GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);TENOR=Os08t0541800-00;KEGG=Os08t0541800-00
Chr08	irgsp1_rep	CDS	27118803	27119345	.	+	0	Parent=Os08t0541800-00
Chr08	irgsp1_rep	mRNA	27120439	27121216	.	-	.	ID=Os08t0541900-00;Name=Os08t0541900-00;Locus_id=Os08g0541900;Note=T antigen%2C Ori-binding domain containing protein.;Transcript_evidence=BT038677 (DDBJ);ORF_evidence=Q6ZIT4 (UniProt);GO=Biological Process: DNA replication (GO:0006260),Molecular Function: DNA replication origin binding (GO:0003688);InterPro=T antigen%2C Ori-binding (IPR003133);TENOR=Os08t0541900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	27121156	27121216	.	-	.	Parent=Os08t0541900-00
Chr08	irgsp1_rep	CDS	27121081	27121155	.	-	0	Parent=Os08t0541900-00
Chr08	irgsp1_rep	three_prime_UTR	27120439	27121080	.	-	.	Parent=Os08t0541900-00
Chr08	irgsp1_rep	mRNA	27121508	27122420	.	-	.	ID=Os08t0541950-00;Name=Os08t0541950-00;Locus_id=Os08g0541950;Note=Similar to 60S ribosomal protein L38.;Transcript_evidence=BT038677 (DDBJ);ORF_evidence=NP_001150178.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L38e (IPR002675);TENOR=Os08t0541950-00
Chr08	irgsp1_rep	five_prime_UTR	27122339	27122420	.	-	.	Parent=Os08t0541950-00
Chr08	irgsp1_rep	CDS	27122192	27122338	.	-	0	Parent=Os08t0541950-00
Chr08	irgsp1_rep	three_prime_UTR	27121755	27122191	.	-	.	Parent=Os08t0541950-00
Chr08	irgsp1_rep	three_prime_UTR	27121508	27121671	.	-	.	Parent=Os08t0541950-00
Chr08	irgsp1_rep	mRNA	27123639	27127540	.	-	.	ID=Os08t0542000-01;Name=Os08t0542000-01;Locus_id=Os08g0542000;Note=Similar to Methionine aminopeptidase.;Transcript_evidence=AK318523 (DDBJ%2C Best hit);ORF_evidence=B9G217 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: cellular process (GO:0009987),Molecular Function: aminopeptidase activity (GO:0004177),Molecular Function: metalloexopeptidase activity (GO:0008235);InterPro=Peptidase M24%2C structural domain (IPR000994),Peptidase M24%2C methionine aminopeptidase (IPR001714),Peptidase M24A%2C methionine aminopeptidase%2C subfamily 2 (IPR002468),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Peptidase M24A%2C methionine aminopeptidase%2C subfamily 2%2C binding site (IPR018349);NIAS_FLcDNA=J065045E24;TENOR=Os08t0542000-01;KEGG=Os08t0542000-01 (EC:3.4.11.18)
Chr08	irgsp1_rep	five_prime_UTR	27127405	27127540	.	-	.	Parent=Os08t0542000-01
Chr08	irgsp1_rep	five_prime_UTR	27127164	27127206	.	-	.	Parent=Os08t0542000-01
Chr08	irgsp1_rep	CDS	27127089	27127163	.	-	0	Parent=Os08t0542000-01
Chr08	irgsp1_rep	CDS	27126452	27126587	.	-	0	Parent=Os08t0542000-01
Chr08	irgsp1_rep	CDS	27126282	27126321	.	-	2	Parent=Os08t0542000-01
Chr08	irgsp1_rep	CDS	27126099	27126206	.	-	1	Parent=Os08t0542000-01
Chr08	irgsp1_rep	CDS	27125807	27125906	.	-	1	Parent=Os08t0542000-01
Chr08	irgsp1_rep	CDS	27125568	27125713	.	-	0	Parent=Os08t0542000-01
Chr08	irgsp1_rep	CDS	27125382	27125473	.	-	1	Parent=Os08t0542000-01
Chr08	irgsp1_rep	CDS	27125174	27125268	.	-	2	Parent=Os08t0542000-01
Chr08	irgsp1_rep	CDS	27124754	27124850	.	-	0	Parent=Os08t0542000-01
Chr08	irgsp1_rep	CDS	27124521	27124664	.	-	2	Parent=Os08t0542000-01
Chr08	irgsp1_rep	CDS	27124083	27124300	.	-	2	Parent=Os08t0542000-01
Chr08	irgsp1_rep	CDS	27123874	27123984	.	-	0	Parent=Os08t0542000-01
Chr08	irgsp1_rep	three_prime_UTR	27123639	27123873	.	-	.	Parent=Os08t0542000-01
Chr08	irgsp1_rep	mRNA	27127762	27129490	.	+	.	ID=Os08t0542100-01;Name=Os08t0542100-01;Locus_id=Os08g0542100;Note=Similar to 60S ribosomal protein L7.;Transcript_evidence=AK058490 (DDBJ%2C Best hit),AK101416 (DDBJ%2C Best hit);ORF_evidence=B6U153 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L7%2C eukaryotic (IPR005998),Ribosomal protein L30%2C N-terminal (IPR012988),Ribosomal protein L30%2C ferredoxin-like fold domain (IPR016082);NIAS_FLcDNA=001-016-E01,J033037N08;TENOR=Os08t0542100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	27127762	27128132	.	+	0	Parent=Os08t0542100-01
Chr08	irgsp1_rep	CDS	27128271	27128408	.	+	1	Parent=Os08t0542100-01
Chr08	irgsp1_rep	CDS	27128522	27128624	.	+	1	Parent=Os08t0542100-01
Chr08	irgsp1_rep	CDS	27129119	27129334	.	+	0	Parent=Os08t0542100-01
Chr08	irgsp1_rep	three_prime_UTR	27129335	27129490	.	+	.	Parent=Os08t0542100-01
Chr08	irgsp1_rep	mRNA	27130095	27133316	.	+	.	ID=Os08t0542200-01;Name=Os08t0542200-01;Locus_id=Os08g0542200;Note=Similar to Resistance gene analog PIC25 (Fragment).;Transcript_evidence=AK099583 (DDBJ%2C Best hit);ORF_evidence=B9G218 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013042A20;Expression=AK099583;TENOR=Os08t0542200-01;KEGG=Os08t0542200-01
Chr08	irgsp1_rep	five_prime_UTR	27130095	27130489	.	+	.	Parent=Os08t0542200-01
Chr08	irgsp1_rep	CDS	27130490	27131924	.	+	0	Parent=Os08t0542200-01
Chr08	irgsp1_rep	CDS	27132358	27132383	.	+	2	Parent=Os08t0542200-01
Chr08	irgsp1_rep	three_prime_UTR	27132384	27133316	.	+	.	Parent=Os08t0542200-01
Chr08	irgsp1_rep	mRNA	27134530	27136434	.	+	.	ID=Os08t0542300-01;Name=Os08t0542300-01;Locus_id=Os08g0542300;Note=Similar to 60S ribosomal protein L7.;Transcript_evidence=AK241181 (DDBJ%2C Best hit);ORF_evidence=B6U153 (UniProt);NIAS_FLcDNA=J065119D10;TENOR=Os08t0542300-01;KEGG=Os08t0542300-01
Chr08	irgsp1_rep	five_prime_UTR	27134530	27134675	.	+	.	Parent=Os08t0542300-01
Chr08	irgsp1_rep	five_prime_UTR	27134995	27135063	.	+	.	Parent=Os08t0542300-01
Chr08	irgsp1_rep	five_prime_UTR	27135254	27135536	.	+	.	Parent=Os08t0542300-01
Chr08	irgsp1_rep	five_prime_UTR	27136068	27136080	.	+	.	Parent=Os08t0542300-01
Chr08	irgsp1_rep	CDS	27136081	27136287	.	+	0	Parent=Os08t0542300-01
Chr08	irgsp1_rep	three_prime_UTR	27136288	27136434	.	+	.	Parent=Os08t0542300-01
Chr08	irgsp1_rep	mRNA	27136925	27138149	.	+	.	ID=Os08t0542500-00;Name=Os08t0542500-00;Locus_id=Os08g0542500;Note=Conserved hypothetical protein.;Transcript_evidence=CT836536 (DDBJ%2C Best hit);ORF_evidence=NP_001066697.2 (RefSeq);TENOR=Os08t0542500-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	27136925	27137294	.	+	.	Parent=Os08t0542500-00
Chr08	irgsp1_rep	CDS	27137295	27137765	.	+	0	Parent=Os08t0542500-00
Chr08	irgsp1_rep	three_prime_UTR	27137766	27137920	.	+	.	Parent=Os08t0542500-00
Chr08	irgsp1_rep	three_prime_UTR	27137927	27138149	.	+	.	Parent=Os08t0542500-00
Chr08	irgsp1_rep	mRNA	27142260	27144964	.	+	.	ID=Os08t0542600-01;Name=Os08t0542600-01;Locus_id=Os08g0542600;Note=HAD-superfamily subfamily IIA hydrolase%2C hypothetical 3 protein.;Transcript_evidence=AK058496 (DDBJ%2C Best hit),AK121886 (DDBJ%2C Best hit);ORF_evidence=B6TMM7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=HAD-superfamily hydrolase%2C subfamily IIA%2C hypothetical 3 (IPR006356),HAD-superfamily hydrolase%2C subfamily IIA (IPR006357),HAD-like domain (IPR023214);NIAS_FLcDNA=001-016-E11,J033105A03;TENOR=Os08t0542600-01
Chr08	irgsp1_rep	five_prime_UTR	27142260	27142360	.	+	.	Parent=Os08t0542600-01
Chr08	irgsp1_rep	CDS	27142361	27142438	.	+	0	Parent=Os08t0542600-01
Chr08	irgsp1_rep	CDS	27142679	27142748	.	+	0	Parent=Os08t0542600-01
Chr08	irgsp1_rep	CDS	27142841	27143000	.	+	2	Parent=Os08t0542600-01
Chr08	irgsp1_rep	CDS	27143247	27143328	.	+	1	Parent=Os08t0542600-01
Chr08	irgsp1_rep	CDS	27143577	27143793	.	+	0	Parent=Os08t0542600-01
Chr08	irgsp1_rep	CDS	27143971	27144035	.	+	2	Parent=Os08t0542600-01
Chr08	irgsp1_rep	CDS	27144281	27144535	.	+	0	Parent=Os08t0542600-01
Chr08	irgsp1_rep	three_prime_UTR	27144536	27144964	.	+	.	Parent=Os08t0542600-01
Chr08	irgsp1_rep	mRNA	27156469	27160507	.	+	.	ID=Os08t0542700-01;Name=Os08t0542700-01;Locus_id=Os08g0542700;Note=Ankyrin repeat containing protein.;Transcript_evidence=AK100665 (DDBJ%2C Best hit);ORF_evidence=NP_001151505.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J023112E24;Expression=AK100665;TENOR=Os08t0542700-01;KEGG=Os08t0542700-01
Chr08	irgsp1_rep	five_prime_UTR	27156469	27156769	.	+	.	Parent=Os08t0542700-01
Chr08	irgsp1_rep	five_prime_UTR	27156914	27157224	.	+	.	Parent=Os08t0542700-01
Chr08	irgsp1_rep	CDS	27157225	27157624	.	+	0	Parent=Os08t0542700-01
Chr08	irgsp1_rep	CDS	27158445	27158854	.	+	2	Parent=Os08t0542700-01
Chr08	irgsp1_rep	CDS	27159197	27160060	.	+	0	Parent=Os08t0542700-01
Chr08	irgsp1_rep	three_prime_UTR	27160061	27160507	.	+	.	Parent=Os08t0542700-01
Chr08	irgsp1_rep	mRNA	27159045	27161026	.	-	.	ID=Os08t0542800-01;Name=Os08t0542800-01;Locus_id=Os08g0542800;Note=Hypothetical protein.;Transcript_evidence=AK121466 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023146C23;TENOR=Os08t0542800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	27160433	27161026	.	-	.	Parent=Os08t0542800-01
Chr08	irgsp1_rep	five_prime_UTR	27159562	27160349	.	-	.	Parent=Os08t0542800-01
Chr08	irgsp1_rep	CDS	27159139	27159561	.	-	0	Parent=Os08t0542800-01
Chr08	irgsp1_rep	three_prime_UTR	27159045	27159138	.	-	.	Parent=Os08t0542800-01
Chr08	irgsp1_rep	mRNA	27163603	27169027	.	+	.	ID=Os08t0542900-01;Name=Os08t0542900-01;Locus_id=Os08g0542900;Note=Lupus La protein family protein.;Transcript_evidence=AK074001 (DDBJ%2C Best hit),AK064378 (DDBJ%2C Best hit);ORF_evidence=B8B975 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Cellular Component: nucleus (GO:0005634),Cellular Component: ribonucleoprotein complex (GO:0030529),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723);InterPro=RNA recognition motif domain (IPR000504),Lupus La protein (IPR002344),RNA-binding protein Lupus La (IPR006630),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033074I09,002-108-D09;TENOR=Os08t0542900-01
Chr08	irgsp1_rep	five_prime_UTR	27163603	27163690	.	+	.	Parent=Os08t0542900-01
Chr08	irgsp1_rep	CDS	27163691	27164032	.	+	0	Parent=Os08t0542900-01
Chr08	irgsp1_rep	CDS	27165203	27165284	.	+	0	Parent=Os08t0542900-01
Chr08	irgsp1_rep	CDS	27165940	27166034	.	+	2	Parent=Os08t0542900-01
Chr08	irgsp1_rep	CDS	27166663	27166734	.	+	0	Parent=Os08t0542900-01
Chr08	irgsp1_rep	CDS	27166814	27166893	.	+	0	Parent=Os08t0542900-01
Chr08	irgsp1_rep	CDS	27166970	27167069	.	+	1	Parent=Os08t0542900-01
Chr08	irgsp1_rep	CDS	27167650	27167697	.	+	0	Parent=Os08t0542900-01
Chr08	irgsp1_rep	CDS	27167812	27167880	.	+	0	Parent=Os08t0542900-01
Chr08	irgsp1_rep	CDS	27168277	27168417	.	+	0	Parent=Os08t0542900-01
Chr08	irgsp1_rep	CDS	27168504	27168758	.	+	0	Parent=Os08t0542900-01
Chr08	irgsp1_rep	three_prime_UTR	27168759	27169027	.	+	.	Parent=Os08t0542900-01
Chr08	irgsp1_rep	mRNA	27169279	27170690	.	-	.	ID=Os08t0543000-00;Name=Os08t0543000-00;Locus_id=Os08g0543000;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6ZJF9 (UniProt);TENOR=Os08t0543000-00
Chr08	irgsp1_rep	CDS	27170519	27170690	.	-	0	Parent=Os08t0543000-00
Chr08	irgsp1_rep	CDS	27170239	27170314	.	-	2	Parent=Os08t0543000-00
Chr08	irgsp1_rep	CDS	27170032	27170152	.	-	1	Parent=Os08t0543000-00
Chr08	irgsp1_rep	CDS	27169279	27169869	.	-	0	Parent=Os08t0543000-00
Chr08	irgsp1_rep	mRNA	27175631	27179263	.	-	.	ID=Os08t0543050-00;Name=Os08t0543050-00;Locus_id=Os08g0543050;Oryzabase Gene Symbol Synonym(s)=PIC27;Oryzabase Gene Name Synonym(s)=resistance gene analog PIC27;Note=Similar to NBS2-RDG2A.;Transcript_evidence=ab initio prediction;ORF_evidence=E2FER6 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);Oryzabase=17952;TENOR=Os08t0543050-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	27175631	27179263	.	-	0	Parent=Os08t0543050-00
Chr08	irgsp1_rep	mRNA	27181459	27185259	.	+	.	ID=Os08t0543051-01;Name=Os08t0543051-01;Locus_id=Os08g0543051;Note=Hypothetical gene.;Transcript_evidence=AK318585 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100013F15;TENOR=Os08t0543051-01;KEGG=Os08t0543051-01
Chr08	irgsp1_rep	five_prime_UTR	27181459	27184300	.	+	.	Parent=Os08t0543051-01
Chr08	irgsp1_rep	CDS	27184301	27184600	.	+	0	Parent=Os08t0543051-01
Chr08	irgsp1_rep	three_prime_UTR	27184601	27185259	.	+	.	Parent=Os08t0543051-01
Chr08	irgsp1_rep	mRNA	27181693	27185268	.	-	.	ID=Os08t0543100-00;Name=Os08t0543100-00;Locus_id=Os08g0543100;Note=Similar to NBS-LRR type resistance protein (Fragment).;Transcript_evidence=AK371340 (DDBJ);ORF_evidence=E2FER5 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: protein binding (GO:0005515),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),Leucine-rich repeat (IPR001611),NB-ARC (IPR002182);TENOR=Os08t0543100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	27185248	27185268	.	-	.	Parent=Os08t0543100-00
Chr08	irgsp1_rep	CDS	27181693	27185247	.	-	0	Parent=Os08t0543100-00
Chr08	irgsp1_rep	mRNA	27185817	27186608	.	+	.	ID=Os08t0543150-00;Name=Os08t0543150-00;Locus_id=Os08g0543150;Note=Non-protein coding transcript.;Transcript_evidence=CU405784 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os08t0543150-00
Chr08	irgsp1_rep	exon	27185817	27186236	.	+	.	Parent=Os08t0543150-00
Chr08	irgsp1_rep	exon	27186343	27186608	.	+	.	Parent=Os08t0543150-00
Chr08	irgsp1_rep	mRNA	27197813	27199667	.	-	.	ID=Os08t0543275-00;Name=Os08t0543275-00;Locus_id=Os08g0543275;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);InterPro=Ribonuclease H1%2C N-terminal (IPR011320);TENOR=Os08t0543275-00
Chr08	irgsp1_rep	five_prime_UTR	27199664	27199667	.	-	.	Parent=Os08t0543275-00
Chr08	irgsp1_rep	CDS	27197813	27199663	.	-	0	Parent=Os08t0543275-00
Chr08	irgsp1_rep	mRNA	27202271	27204858	.	+	.	ID=Os08t0543400-01;Name=Os08t0543400-01;Locus_id=Os08g0543400;Note=Transferase family protein.;Transcript_evidence=AK099167 (DDBJ%2C Best hit);ORF_evidence=longestORF;GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J023080G08;Expression=AK099167;TENOR=Os08t0543400-01;KEGG=Os08t0543400-01
Chr08	irgsp1_rep	five_prime_UTR	27202271	27202503	.	+	.	Parent=Os08t0543400-01
Chr08	irgsp1_rep	five_prime_UTR	27203242	27203302	.	+	.	Parent=Os08t0543400-01
Chr08	irgsp1_rep	CDS	27203303	27203761	.	+	0	Parent=Os08t0543400-01
Chr08	irgsp1_rep	CDS	27203873	27204742	.	+	0	Parent=Os08t0543400-01
Chr08	irgsp1_rep	three_prime_UTR	27204743	27204858	.	+	.	Parent=Os08t0543400-01
Chr08	irgsp1_rep	mRNA	27202274	27204911	.	+	.	ID=Os08t0543400-02;Name=Os08t0543400-02;Locus_id=Os08g0543400;Note=Transferase family protein.;Transcript_evidence=AK072106 (DDBJ%2C Best hit);ORF_evidence=longestORF;GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J013116A07;Expression=AK072106;TENOR=Os08t0543400-02;KEGG=Os08t0543400-02
Chr08	irgsp1_rep	five_prime_UTR	27202274	27202503	.	+	.	Parent=Os08t0543400-02
Chr08	irgsp1_rep	five_prime_UTR	27203230	27203302	.	+	.	Parent=Os08t0543400-02
Chr08	irgsp1_rep	CDS	27203303	27203761	.	+	0	Parent=Os08t0543400-02
Chr08	irgsp1_rep	CDS	27203873	27204742	.	+	0	Parent=Os08t0543400-02
Chr08	irgsp1_rep	three_prime_UTR	27204743	27204911	.	+	.	Parent=Os08t0543400-02
Chr08	irgsp1_rep	mRNA	27203556	27204911	.	+	.	ID=Os08t0543400-03;Name=Os08t0543400-03;Locus_id=Os08g0543400;Note=Similar to anthranilate N-benzoyltransferase protein 1.;Transcript_evidence=AK058361 (DDBJ%2C Best hit);ORF_evidence=NP_001149297.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=001-014-F05;Expression=AK058361;TENOR=Os08t0543400-03;KEGG=Os08t0543400-03
Chr08	irgsp1_rep	five_prime_UTR	27203556	27203557	.	+	.	Parent=Os08t0543400-03
Chr08	irgsp1_rep	CDS	27203558	27203761	.	+	0	Parent=Os08t0543400-03
Chr08	irgsp1_rep	CDS	27203873	27204742	.	+	0	Parent=Os08t0543400-03
Chr08	irgsp1_rep	three_prime_UTR	27204743	27204911	.	+	.	Parent=Os08t0543400-03
Chr08	irgsp1_rep	mRNA	27205935	27209931	.	-	.	ID=Os08t0543500-01;Name=Os08t0543500-01;Locus_id=Os08g0543500;Note=Similar to NBS-LRR type resistance protein (Fragment).;Transcript_evidence=AK121394 (DDBJ%2C Best hit);ORF_evidence=Q6ZBI6 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J023130J02;Expression=AK121394;TENOR=Os08t0543500-01;KEGG=Os08t0543500-01
Chr08	irgsp1_rep	CDS	27206470	27209931	.	-	0	Parent=Os08t0543500-01
Chr08	irgsp1_rep	three_prime_UTR	27206251	27206469	.	-	.	Parent=Os08t0543500-01
Chr08	irgsp1_rep	three_prime_UTR	27205935	27206133	.	-	.	Parent=Os08t0543500-01
Chr08	irgsp1_rep	mRNA	27210441	27217016	.	-	.	ID=Os08t0543600-01;Name=Os08t0543600-01;Locus_id=Os08g0543600;Note=Alpha-isopropylmalate/homocitrate synthase%2C conserved site domain containing protein.;Transcript_evidence=AK066525 (DDBJ%2C Best hit);ORF_evidence=B8B9G1 (UniProt);NIAS_FLcDNA=J013072L17;Expression=AK066525;TENOR=Os08t0543600-01;KEGG=Os08t0543600-01
Chr08	irgsp1_rep	five_prime_UTR	27216726	27217016	.	-	.	Parent=Os08t0543600-01
Chr08	irgsp1_rep	CDS	27216654	27216725	.	-	0	Parent=Os08t0543600-01
Chr08	irgsp1_rep	CDS	27216500	27216553	.	-	0	Parent=Os08t0543600-01
Chr08	irgsp1_rep	CDS	27216143	27216376	.	-	0	Parent=Os08t0543600-01
Chr08	irgsp1_rep	CDS	27215325	27215423	.	-	0	Parent=Os08t0543600-01
Chr08	irgsp1_rep	CDS	27215197	27215252	.	-	0	Parent=Os08t0543600-01
Chr08	irgsp1_rep	CDS	27214708	27214819	.	-	1	Parent=Os08t0543600-01
Chr08	irgsp1_rep	CDS	27214015	27214185	.	-	0	Parent=Os08t0543600-01
Chr08	irgsp1_rep	CDS	27213678	27213911	.	-	0	Parent=Os08t0543600-01
Chr08	irgsp1_rep	CDS	27213218	27213436	.	-	0	Parent=Os08t0543600-01
Chr08	irgsp1_rep	CDS	27212899	27213117	.	-	0	Parent=Os08t0543600-01
Chr08	irgsp1_rep	CDS	27212688	27212816	.	-	0	Parent=Os08t0543600-01
Chr08	irgsp1_rep	CDS	27212313	27212606	.	-	0	Parent=Os08t0543600-01
Chr08	irgsp1_rep	CDS	27212108	27212206	.	-	0	Parent=Os08t0543600-01
Chr08	irgsp1_rep	CDS	27211547	27212034	.	-	0	Parent=Os08t0543600-01
Chr08	irgsp1_rep	CDS	27211425	27211458	.	-	1	Parent=Os08t0543600-01
Chr08	irgsp1_rep	three_prime_UTR	27211406	27211424	.	-	.	Parent=Os08t0543600-01
Chr08	irgsp1_rep	three_prime_UTR	27210441	27210787	.	-	.	Parent=Os08t0543600-01
Chr08	irgsp1_rep	mRNA	27210576	27213820	.	-	.	ID=Os08t0543600-02;Name=Os08t0543600-02;Locus_id=Os08g0543600;Note=Hypothetical conserved gene.;Transcript_evidence=AK101733 (DDBJ%2C Best hit);ORF_evidence=B8B9G1 (UniProt);NIAS_FLcDNA=J033061H08;Expression=AK101733;TENOR=Os08t0543600-02;KEGG=Os08t0543600-02
Chr08	irgsp1_rep	five_prime_UTR	27213819	27213820	.	-	.	Parent=Os08t0543600-02
Chr08	irgsp1_rep	CDS	27213678	27213818	.	-	0	Parent=Os08t0543600-02
Chr08	irgsp1_rep	CDS	27213218	27213436	.	-	0	Parent=Os08t0543600-02
Chr08	irgsp1_rep	CDS	27212899	27213117	.	-	0	Parent=Os08t0543600-02
Chr08	irgsp1_rep	CDS	27212688	27212816	.	-	0	Parent=Os08t0543600-02
Chr08	irgsp1_rep	CDS	27212313	27212606	.	-	0	Parent=Os08t0543600-02
Chr08	irgsp1_rep	CDS	27212108	27212206	.	-	0	Parent=Os08t0543600-02
Chr08	irgsp1_rep	CDS	27211547	27212034	.	-	0	Parent=Os08t0543600-02
Chr08	irgsp1_rep	CDS	27211425	27211458	.	-	1	Parent=Os08t0543600-02
Chr08	irgsp1_rep	three_prime_UTR	27211406	27211424	.	-	.	Parent=Os08t0543600-02
Chr08	irgsp1_rep	three_prime_UTR	27210576	27210787	.	-	.	Parent=Os08t0543600-02
Chr08	irgsp1_rep	mRNA	27211546	27212763	.	+	.	ID=Os08t0543650-00;Name=Os08t0543650-00;Locus_id=Os08g0543650;Note=Non-protein coding transcript.;Transcript_evidence=BT019236 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0543650-00
Chr08	irgsp1_rep	exon	27211546	27211737	.	+	.	Parent=Os08t0543650-00
Chr08	irgsp1_rep	exon	27211802	27212034	.	+	.	Parent=Os08t0543650-00
Chr08	irgsp1_rep	exon	27212108	27212202	.	+	.	Parent=Os08t0543650-00
Chr08	irgsp1_rep	exon	27212315	27212763	.	+	.	Parent=Os08t0543650-00
Chr08	irgsp1_rep	mRNA	27223154	27223980	.	-	.	ID=Os08t0543700-00;Name=Os08t0543700-00;Locus_id=Os08g0543700;Oryzabase Gene Symbol Synonym(s)=OsbHLH011;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 011;Note=Hypothetical conserved gene.;Transcript_evidence=BT040679 (DDBJ);ORF_evidence=Q6ZBI4 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);Oryzabase=15304;TENOR=Os08t0543700-00;KEGG=Os08t0543700-00
Chr08	irgsp1_rep	five_prime_UTR	27223960	27223980	.	-	.	Parent=Os08t0543700-00
Chr08	irgsp1_rep	CDS	27223168	27223959	.	-	0	Parent=Os08t0543700-00
Chr08	irgsp1_rep	three_prime_UTR	27223154	27223167	.	-	.	Parent=Os08t0543700-00
Chr08	irgsp1_rep	mRNA	27237307	27241279	.	+	.	ID=Os08t0543900-00;Name=Os08t0543900-00;Locus_id=Os08g0543900;CGSNL Gene Symbol=BZIP68;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 68;Oryzabase Gene Symbol Synonym(s)=OsbZIP68;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 68;Note=Similar to Transcription factor RF2b.;Transcript_evidence=AK374525 (DDBJ);ORF_evidence=B6SSU4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),Basic leucine zipper (IPR011700);Oryzabase=10148;TENOR=Os08t0543900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	27237307	27237375	.	+	.	Parent=Os08t0543900-00
Chr08	irgsp1_rep	CDS	27237376	27238352	.	+	0	Parent=Os08t0543900-00
Chr08	irgsp1_rep	CDS	27238437	27238569	.	+	1	Parent=Os08t0543900-00
Chr08	irgsp1_rep	CDS	27238659	27238743	.	+	0	Parent=Os08t0543900-00
Chr08	irgsp1_rep	CDS	27240614	27240813	.	+	2	Parent=Os08t0543900-00
Chr08	irgsp1_rep	three_prime_UTR	27240814	27240934	.	+	.	Parent=Os08t0543900-00
Chr08	irgsp1_rep	three_prime_UTR	27241003	27241279	.	+	.	Parent=Os08t0543900-00
Chr08	irgsp1_rep	mRNA	27269457	27269924	.	-	.	ID=Os08t0544101-01;Name=Os08t0544101-01;Locus_id=Os08g0544101;Note=Non-protein coding transcript.;Transcript_evidence=AK242371 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080036O22;TENOR=Os08t0544101-01
Chr08	irgsp1_rep	exon	27269894	27269924	.	-	.	Parent=Os08t0544101-01
Chr08	irgsp1_rep	exon	27269457	27269722	.	-	.	Parent=Os08t0544101-01
Chr08	irgsp1_rep	mRNA	27270665	27277289	.	-	.	ID=Os08t0544250-00;Name=Os08t0544250-00;Locus_id=Os08g0544250;Note=Hypothetical gene.;Transcript_evidence=BT055686 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0544250-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	27276994	27277289	.	-	0	Parent=Os08t0544250-00
Chr08	irgsp1_rep	CDS	27276746	27276776	.	-	1	Parent=Os08t0544250-00
Chr08	irgsp1_rep	three_prime_UTR	27276526	27276745	.	-	.	Parent=Os08t0544250-00
Chr08	irgsp1_rep	three_prime_UTR	27276264	27276440	.	-	.	Parent=Os08t0544250-00
Chr08	irgsp1_rep	three_prime_UTR	27271758	27271898	.	-	.	Parent=Os08t0544250-00
Chr08	irgsp1_rep	three_prime_UTR	27270665	27270863	.	-	.	Parent=Os08t0544250-00
Chr08	irgsp1_rep	mRNA	27268052	27277557	.	+	.	ID=Os08t0544400-01;Name=Os08t0544400-01;Locus_id=Os08g0544400;RAP-DB Gene Symbol Synonym(s)=OsPDR1%2C OsPDR1.3%2C OsABCG45;RAP-DB Gene Name Synonym(s)=pleiotropic drug resistance 1;CGSNL Gene Symbol=PDR1;CGSNL Gene Name=PLEIOTROPIC DRUG RESISTANCE 1;Oryzabase Gene Symbol Synonym(s)=OsABCG45%2C OsPDR1%2C FCO1;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 45%2C pleiotropic drug resistance 1%2C Functioning in Cesium Over-transport 1;Note=A member of the pleiotropic drug resistance (PDR) subfamily of ATP-binding cassette (ABC) transporter%2C Regulation of plant growth and pathogen resistance;Transcript_evidence=AK107688 (truncated),XM_015794439;ORF_evidence=Q8GU82;GO=Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Cellular Component: membrane (GO:0016020);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),ABC transporter-like (IPR003439),AAA+ ATPase domain (IPR003593),ABC-2 type transporter (IPR013525),Plant PDR ABC transporter associated (IPR013581),ATP-binding cassette transporter%2C PDR-like subfamily G%2C domain 2 (IPR034003),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=002-132-B06 (truncated);Manual Curation=August 19%2C 2020;Literature_PMID=32771142;Oryzabase=12018;Expression=AK107688;TENOR=Os08t0544400-01;KEGG=Os08t0544400-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=plasma membrane (GO:0005886)
Chr08	irgsp1_rep	five_prime_UTR	27268052	27268082	.	+	.	Parent=Os08t0544400-01
Chr08	irgsp1_rep	CDS	27268083	27268207	.	+	0	Parent=Os08t0544400-01
Chr08	irgsp1_rep	CDS	27268368	27268488	.	+	1	Parent=Os08t0544400-01
Chr08	irgsp1_rep	CDS	27270697	27270785	.	+	0	Parent=Os08t0544400-01
Chr08	irgsp1_rep	CDS	27271018	27271102	.	+	1	Parent=Os08t0544400-01
Chr08	irgsp1_rep	CDS	27271212	27271371	.	+	0	Parent=Os08t0544400-01
Chr08	irgsp1_rep	CDS	27271567	27271643	.	+	2	Parent=Os08t0544400-01
Chr08	irgsp1_rep	CDS	27271719	27271769	.	+	0	Parent=Os08t0544400-01
Chr08	irgsp1_rep	CDS	27271838	27271928	.	+	0	Parent=Os08t0544400-01
Chr08	irgsp1_rep	CDS	27272271	27272572	.	+	2	Parent=Os08t0544400-01
Chr08	irgsp1_rep	CDS	27272761	27273356	.	+	0	Parent=Os08t0544400-01
Chr08	irgsp1_rep	CDS	27273458	27273618	.	+	1	Parent=Os08t0544400-01
Chr08	irgsp1_rep	CDS	27273731	27273834	.	+	2	Parent=Os08t0544400-01
Chr08	irgsp1_rep	CDS	27273939	27274098	.	+	0	Parent=Os08t0544400-01
Chr08	irgsp1_rep	CDS	27274184	27274347	.	+	2	Parent=Os08t0544400-01
Chr08	irgsp1_rep	CDS	27274455	27274787	.	+	0	Parent=Os08t0544400-01
Chr08	irgsp1_rep	CDS	27274882	27275172	.	+	0	Parent=Os08t0544400-01
Chr08	irgsp1_rep	CDS	27275518	27275601	.	+	0	Parent=Os08t0544400-01
Chr08	irgsp1_rep	CDS	27275672	27275805	.	+	0	Parent=Os08t0544400-01
Chr08	irgsp1_rep	CDS	27275907	27276134	.	+	1	Parent=Os08t0544400-01
Chr08	irgsp1_rep	CDS	27276235	27276406	.	+	1	Parent=Os08t0544400-01
Chr08	irgsp1_rep	CDS	27276505	27276759	.	+	0	Parent=Os08t0544400-01
Chr08	irgsp1_rep	CDS	27277020	27277289	.	+	0	Parent=Os08t0544400-01
Chr08	irgsp1_rep	three_prime_UTR	27277290	27277557	.	+	.	Parent=Os08t0544400-01
Chr08	irgsp1_rep	mRNA	27268083	27277289	.	+	.	ID=Os08t0544400-02;Name=Os08t0544400-02;Locus_id=Os08g0544400;RAP-DB Gene Symbol Synonym(s)=OsPDR1%2C OsPDR1.2%2C OsABCG45;RAP-DB Gene Name Synonym(s)=pleiotropic drug resistance 1;CGSNL Gene Symbol=PDR1;CGSNL Gene Name=PLEIOTROPIC DRUG RESISTANCE 1;Oryzabase Gene Symbol Synonym(s)=OsABCG45%2C OsPDR1%2C FCO1;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 45%2C pleiotropic drug resistance 1%2C Functioning in Cesium Over-transport 1;Note=A member of the pleiotropic drug resistance (PDR) subfamily of ATP-binding cassette (ABC) transporter%2C Regulation of plant growth and pathogen resistance;Transcript_evidence=AJ535054;ORF_evidence=Inferred from literature;GO=Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Cellular Component: membrane (GO:0016020);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),ABC transporter-like (IPR003439),AAA+ ATPase domain (IPR003593),ABC-2 type transporter (IPR013525),Plant PDR ABC transporter associated (IPR013581),ATP-binding cassette transporter%2C PDR-like subfamily G%2C domain 2 (IPR034003),ABC transporter%2C conserved site (IPR017871);Manual Curation=August 19%2C 2020;Literature_PMID=32771142;Oryzabase=12018;Subcellular location=plasma membrane (GO:0005886)
Chr08	irgsp1_rep	CDS	27268083	27268207	.	+	0	Parent=Os08t0544400-02
Chr08	irgsp1_rep	CDS	27268368	27268488	.	+	1	Parent=Os08t0544400-02
Chr08	irgsp1_rep	CDS	27270697	27270785	.	+	0	Parent=Os08t0544400-02
Chr08	irgsp1_rep	CDS	27271018	27271102	.	+	1	Parent=Os08t0544400-02
Chr08	irgsp1_rep	CDS	27271212	27271397	.	+	0	Parent=Os08t0544400-02
Chr08	irgsp1_rep	CDS	27271719	27271769	.	+	0	Parent=Os08t0544400-02
Chr08	irgsp1_rep	CDS	27271838	27271928	.	+	0	Parent=Os08t0544400-02
Chr08	irgsp1_rep	CDS	27272271	27272572	.	+	2	Parent=Os08t0544400-02
Chr08	irgsp1_rep	CDS	27272761	27273356	.	+	0	Parent=Os08t0544400-02
Chr08	irgsp1_rep	CDS	27273458	27273618	.	+	1	Parent=Os08t0544400-02
Chr08	irgsp1_rep	CDS	27273731	27273834	.	+	2	Parent=Os08t0544400-02
Chr08	irgsp1_rep	CDS	27273939	27274098	.	+	0	Parent=Os08t0544400-02
Chr08	irgsp1_rep	CDS	27274184	27274347	.	+	2	Parent=Os08t0544400-02
Chr08	irgsp1_rep	CDS	27274455	27274787	.	+	0	Parent=Os08t0544400-02
Chr08	irgsp1_rep	CDS	27274882	27275172	.	+	0	Parent=Os08t0544400-02
Chr08	irgsp1_rep	CDS	27275518	27275601	.	+	0	Parent=Os08t0544400-02
Chr08	irgsp1_rep	CDS	27275672	27275805	.	+	0	Parent=Os08t0544400-02
Chr08	irgsp1_rep	CDS	27275907	27276134	.	+	1	Parent=Os08t0544400-02
Chr08	irgsp1_rep	CDS	27276235	27276406	.	+	1	Parent=Os08t0544400-02
Chr08	irgsp1_rep	CDS	27276505	27276759	.	+	0	Parent=Os08t0544400-02
Chr08	irgsp1_rep	CDS	27277020	27277289	.	+	0	Parent=Os08t0544400-02
Chr08	irgsp1_rep	mRNA	27268083	27277540	.	+	.	ID=Os08t0544400-03;Name=Os08t0544400-03;Locus_id=Os08g0544400;RAP-DB Gene Symbol Synonym(s)=OsPDR1%2C OsPDR1.1%2C OsABCG45;RAP-DB Gene Name Synonym(s)=pleiotropic drug resistance 1;CGSNL Gene Symbol=PDR1;CGSNL Gene Name=PLEIOTROPIC DRUG RESISTANCE 1;Oryzabase Gene Symbol Synonym(s)=OsABCG45%2C OsPDR1%2C FCO1;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 45%2C pleiotropic drug resistance 1%2C Functioning in Cesium Over-transport 1;Note=A member of the pleiotropic drug resistance (PDR) subfamily of ATP-binding cassette (ABC) transporter%2C Regulation of plant growth and pathogen resistance;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Cellular Component: membrane (GO:0016020);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),ABC transporter-like (IPR003439),AAA+ ATPase domain (IPR003593),ABC-2 type transporter (IPR013525),Plant PDR ABC transporter associated (IPR013581),ATP-binding cassette transporter%2C PDR-like subfamily G%2C domain 2 (IPR034003),ABC transporter%2C conserved site (IPR017871);Manual Curation=August 19%2C 2020;Literature_PMID=32771142;Oryzabase=12018;Subcellular location=plasma membrane (GO:0005886)
Chr08	irgsp1_rep	CDS	27268083	27268207	.	+	0	Parent=Os08t0544400-03
Chr08	irgsp1_rep	CDS	27268368	27268488	.	+	1	Parent=Os08t0544400-03
Chr08	irgsp1_rep	CDS	27270697	27270785	.	+	0	Parent=Os08t0544400-03
Chr08	irgsp1_rep	CDS	27271018	27271102	.	+	1	Parent=Os08t0544400-03
Chr08	irgsp1_rep	CDS	27271212	27271316	.	+	0	Parent=Os08t0544400-03
Chr08	irgsp1_rep	CDS	27271688	27271769	.	+	0	Parent=Os08t0544400-03
Chr08	irgsp1_rep	CDS	27271815	27271928	.	+	2	Parent=Os08t0544400-03
Chr08	irgsp1_rep	CDS	27272271	27272572	.	+	2	Parent=Os08t0544400-03
Chr08	irgsp1_rep	CDS	27272761	27273356	.	+	0	Parent=Os08t0544400-03
Chr08	irgsp1_rep	CDS	27273458	27273618	.	+	1	Parent=Os08t0544400-03
Chr08	irgsp1_rep	CDS	27273731	27273834	.	+	2	Parent=Os08t0544400-03
Chr08	irgsp1_rep	CDS	27273939	27274098	.	+	0	Parent=Os08t0544400-03
Chr08	irgsp1_rep	CDS	27274184	27274347	.	+	2	Parent=Os08t0544400-03
Chr08	irgsp1_rep	CDS	27274455	27274787	.	+	0	Parent=Os08t0544400-03
Chr08	irgsp1_rep	CDS	27274882	27275172	.	+	0	Parent=Os08t0544400-03
Chr08	irgsp1_rep	CDS	27275518	27275601	.	+	0	Parent=Os08t0544400-03
Chr08	irgsp1_rep	CDS	27275672	27275805	.	+	0	Parent=Os08t0544400-03
Chr08	irgsp1_rep	CDS	27275907	27276134	.	+	1	Parent=Os08t0544400-03
Chr08	irgsp1_rep	CDS	27276235	27276406	.	+	1	Parent=Os08t0544400-03
Chr08	irgsp1_rep	CDS	27276505	27276759	.	+	0	Parent=Os08t0544400-03
Chr08	irgsp1_rep	CDS	27277020	27277289	.	+	0	Parent=Os08t0544400-03
Chr08	irgsp1_rep	three_prime_UTR	27277290	27277540	.	+	.	Parent=Os08t0544400-03
Chr08	irgsp1_rep	mRNA	27277738	27290452	.	-	.	ID=Os08t0544500-01;Name=Os08t0544500-01;Locus_id=Os08g0544500;RAP-DB Gene Symbol Synonym(s)=LPL3%2C DS8;RAP-DB Gene Name Synonym(s)=less pronounced lobe epidermal cell3%2C drought sensitive 8;CGSNL Gene Symbol=LPL3;CGSNL Gene Name=LESS PRONOUNCED LOBE EPIDERMAL CELL 3;Oryzabase Gene Symbol Synonym(s)=OsLPL3%2C DS8%2C OsDS8;Oryzabase Gene Name Synonym(s)=less pronounced lobe epidermal cell3%2C NCK-associated protein 1 (NAP1)-like protein%2C drought sensitive 8;Note=NCK-associated protein 1 (NAP1)-like protein%2C Homolog of SCAR/WAVE complex components%2C Control of epidermal cell morphogenesis%2C Drought sensitivity%2C Actin filament activity;Transcript_evidence=AK071354;ORF_evidence=Q6ZBH9;InterPro=Nck-associated protein 1 (IPR019137);NIAS_FLcDNA=J023095B09;Manual Curation=May 29%2C 2019;Literature_PMID=30771248,27252469;Oryzabase=22382;Expression=AK071354;TENOR=Os08t0544500-01;KEGG=Os08t0544500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	27290379	27290452	.	-	.	Parent=Os08t0544500-01
Chr08	irgsp1_rep	five_prime_UTR	27289723	27289740	.	-	.	Parent=Os08t0544500-01
Chr08	irgsp1_rep	CDS	27289354	27289722	.	-	0	Parent=Os08t0544500-01
Chr08	irgsp1_rep	CDS	27289202	27289276	.	-	0	Parent=Os08t0544500-01
Chr08	irgsp1_rep	CDS	27287951	27288031	.	-	0	Parent=Os08t0544500-01
Chr08	irgsp1_rep	CDS	27287787	27287867	.	-	0	Parent=Os08t0544500-01
Chr08	irgsp1_rep	CDS	27287600	27287682	.	-	0	Parent=Os08t0544500-01
Chr08	irgsp1_rep	CDS	27286994	27287078	.	-	1	Parent=Os08t0544500-01
Chr08	irgsp1_rep	CDS	27286314	27286439	.	-	0	Parent=Os08t0544500-01
Chr08	irgsp1_rep	CDS	27286072	27286179	.	-	0	Parent=Os08t0544500-01
Chr08	irgsp1_rep	CDS	27285760	27285804	.	-	0	Parent=Os08t0544500-01
Chr08	irgsp1_rep	CDS	27285537	27285679	.	-	0	Parent=Os08t0544500-01
Chr08	irgsp1_rep	CDS	27285111	27285243	.	-	1	Parent=Os08t0544500-01
Chr08	irgsp1_rep	CDS	27284445	27284549	.	-	0	Parent=Os08t0544500-01
Chr08	irgsp1_rep	CDS	27284286	27284364	.	-	0	Parent=Os08t0544500-01
Chr08	irgsp1_rep	CDS	27283699	27283892	.	-	2	Parent=Os08t0544500-01
Chr08	irgsp1_rep	CDS	27283086	27283231	.	-	0	Parent=Os08t0544500-01
Chr08	irgsp1_rep	CDS	27282589	27282670	.	-	1	Parent=Os08t0544500-01
Chr08	irgsp1_rep	CDS	27282365	27282475	.	-	0	Parent=Os08t0544500-01
Chr08	irgsp1_rep	CDS	27281707	27281832	.	-	0	Parent=Os08t0544500-01
Chr08	irgsp1_rep	CDS	27281520	27281635	.	-	0	Parent=Os08t0544500-01
Chr08	irgsp1_rep	CDS	27281341	27281437	.	-	1	Parent=Os08t0544500-01
Chr08	irgsp1_rep	CDS	27279869	27280866	.	-	0	Parent=Os08t0544500-01
Chr08	irgsp1_rep	CDS	27278994	27279203	.	-	1	Parent=Os08t0544500-01
Chr08	irgsp1_rep	CDS	27278076	27278562	.	-	1	Parent=Os08t0544500-01
Chr08	irgsp1_rep	three_prime_UTR	27277738	27278075	.	-	.	Parent=Os08t0544500-01
Chr08	irgsp1_rep	mRNA	27292449	27293040	.	+	.	ID=Os08t0544600-01;Name=Os08t0544600-01;Locus_id=Os08g0544600;Note=Hypothetical protein.;Transcript_evidence=AK109237 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-156-F09;TENOR=Os08t0544600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	27292449	27292462	.	+	.	Parent=Os08t0544600-01
Chr08	irgsp1_rep	CDS	27292463	27292945	.	+	0	Parent=Os08t0544600-01
Chr08	irgsp1_rep	three_prime_UTR	27292946	27293040	.	+	.	Parent=Os08t0544600-01
Chr08	irgsp1_rep	mRNA	27295561	27296206	.	-	.	ID=Os08t0544700-01;Name=Os08t0544700-01;Locus_id=Os08g0544700;Note=Hypothetical protein.;Transcript_evidence=AK111366 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-181-H12;Expression=AK111366;TENOR=Os08t0544700-01;KEGG=Os08t0544700-01
Chr08	irgsp1_rep	five_prime_UTR	27296146	27296206	.	-	.	Parent=Os08t0544700-01
Chr08	irgsp1_rep	CDS	27295651	27296145	.	-	0	Parent=Os08t0544700-01
Chr08	irgsp1_rep	three_prime_UTR	27295561	27295650	.	-	.	Parent=Os08t0544700-01
Chr08	irgsp1_rep	mRNA	27296219	27297834	.	-	.	ID=Os08t0544800-01;Name=Os08t0544800-01;Locus_id=Os08g0544800;CGSNL Gene Symbol=PCF2;CGSNL Gene Name=PROLIFERATING CELL FACTOR 2;Oryzabase Gene Symbol Synonym(s)=OsPCF2;Oryzabase Gene Name Synonym(s)=PROMOTER BINDING FACTOR2;Note=PCF2.;Transcript_evidence=AK119660 (DDBJ%2C Best hit),AK060536 (DDBJ%2C Best hit),AK102666 (DDBJ%2C Best hit);ORF_evidence=Q6ZBH6 (UniProt);InterPro=Transcription factor%2C TCP (IPR005333),Transcription factor TCP subgroup (IPR017887);NIAS_FLcDNA=002-130-H12,001-021-D02,J033101L16;Oryzabase=11698;Expression=AK119660;TENOR=Os08t0544800-01;KEGG=Os08t0544800-01
Chr08	irgsp1_rep	five_prime_UTR	27297683	27297834	.	-	.	Parent=Os08t0544800-01
Chr08	irgsp1_rep	CDS	27296561	27297682	.	-	0	Parent=Os08t0544800-01
Chr08	irgsp1_rep	three_prime_UTR	27296219	27296560	.	-	.	Parent=Os08t0544800-01
Chr08	irgsp1_rep	mRNA	27302249	27306827	.	+	.	ID=Os08t0544900-01;Name=Os08t0544900-01;Locus_id=Os08g0544900;Note=Similar to HMG-CoA synthase.;Transcript_evidence=AK102923 (DDBJ%2C Best hit);ORF_evidence=B6T7Q4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: isoprenoid biosynthetic process (GO:0008299),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydroxymethylglutaryl-CoA synthase activity (GO:0004421);InterPro=Hydroxymethylglutaryl-coenzyme A synthase%2C active site (IPR000590),Hydroxymethylglutaryl-CoA synthase%2C eukaryotic (IPR010122),Hydroxymethylglutaryl-coenzyme A synthase%2C N-terminal (IPR013528),Hydroxymethylglutaryl-coenzyme A synthase C-terminal (IPR013746),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);NIAS_FLcDNA=J033114C16;Expression=AK102923;TENOR=Os08t0544900-01;KEGG=Os08t0544900-01 (EC:2.3.3.10)
Chr08	irgsp1_rep	five_prime_UTR	27302249	27302442	.	+	.	Parent=Os08t0544900-01
Chr08	irgsp1_rep	CDS	27302443	27302511	.	+	0	Parent=Os08t0544900-01
Chr08	irgsp1_rep	CDS	27303210	27303316	.	+	0	Parent=Os08t0544900-01
Chr08	irgsp1_rep	CDS	27303494	27303626	.	+	1	Parent=Os08t0544900-01
Chr08	irgsp1_rep	CDS	27303863	27304006	.	+	0	Parent=Os08t0544900-01
Chr08	irgsp1_rep	CDS	27304114	27304272	.	+	0	Parent=Os08t0544900-01
Chr08	irgsp1_rep	CDS	27304409	27304482	.	+	0	Parent=Os08t0544900-01
Chr08	irgsp1_rep	CDS	27304573	27304648	.	+	1	Parent=Os08t0544900-01
Chr08	irgsp1_rep	CDS	27304772	27304827	.	+	0	Parent=Os08t0544900-01
Chr08	irgsp1_rep	CDS	27305181	27305268	.	+	1	Parent=Os08t0544900-01
Chr08	irgsp1_rep	CDS	27305357	27305497	.	+	0	Parent=Os08t0544900-01
Chr08	irgsp1_rep	CDS	27305580	27305729	.	+	0	Parent=Os08t0544900-01
Chr08	irgsp1_rep	CDS	27306257	27306463	.	+	0	Parent=Os08t0544900-01
Chr08	irgsp1_rep	three_prime_UTR	27306464	27306827	.	+	.	Parent=Os08t0544900-01
Chr08	irgsp1_rep	mRNA	27306912	27309437	.	-	.	ID=Os08t0545000-01;Name=Os08t0545000-01;Locus_id=Os08g0545000;Note=Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 domain containing protein.;Transcript_evidence=AK121240 (DDBJ%2C Best hit);ORF_evidence=B8B9C3 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J023097I24;Expression=AK121240;TENOR=Os08t0545000-01;KEGG=Os08t0545000-01
Chr08	irgsp1_rep	five_prime_UTR	27309113	27309437	.	-	.	Parent=Os08t0545000-01
Chr08	irgsp1_rep	CDS	27307133	27309112	.	-	0	Parent=Os08t0545000-01
Chr08	irgsp1_rep	three_prime_UTR	27306912	27307132	.	-	.	Parent=Os08t0545000-01
Chr08	irgsp1_rep	mRNA	27307672	27309533	.	+	.	ID=Os08t0545101-00;Name=Os08t0545101-00;Locus_id=Os08g0545101;Note=Hypothetical gene.;Transcript_evidence=BT084210 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0545101-00;KEGG=Os08t0545101-00
Chr08	irgsp1_rep	five_prime_UTR	27307672	27307672	.	+	.	Parent=Os08t0545101-00
Chr08	irgsp1_rep	CDS	27307673	27308884	.	+	0	Parent=Os08t0545101-00
Chr08	irgsp1_rep	three_prime_UTR	27308885	27309299	.	+	.	Parent=Os08t0545101-00
Chr08	irgsp1_rep	three_prime_UTR	27309407	27309533	.	+	.	Parent=Os08t0545101-00
Chr08	irgsp1_rep	mRNA	27315939	27318227	.	+	.	ID=Os08t0545200-01;Name=Os08t0545200-01;Locus_id=Os08g0545200;Oryzabase Gene Symbol Synonym(s)=OsDH1%2C DH1;Oryzabase Gene Name Synonym(s)=dehydrogenase 1;Note=Alcohol dehydrogenase superfamily%2C zinc-containing protein.;Transcript_evidence=AK101517 (DDBJ%2C Best hit);ORF_evidence=NP_001149440.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),Alcohol dehydrogenase%2C zinc-type%2C conserved site (IPR002328),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033046H09;Oryzabase=20375;Expression=AK101517;TENOR=Os08t0545200-01;KEGG=Os08t0545200-01 (EC:1.1.1.14)
Chr08	irgsp1_rep	five_prime_UTR	27315939	27316033	.	+	.	Parent=Os08t0545200-01
Chr08	irgsp1_rep	CDS	27316034	27316166	.	+	0	Parent=Os08t0545200-01
Chr08	irgsp1_rep	CDS	27316953	27317020	.	+	2	Parent=Os08t0545200-01
Chr08	irgsp1_rep	CDS	27317096	27317329	.	+	0	Parent=Os08t0545200-01
Chr08	irgsp1_rep	CDS	27317407	27318081	.	+	0	Parent=Os08t0545200-01
Chr08	irgsp1_rep	three_prime_UTR	27318082	27318227	.	+	.	Parent=Os08t0545200-01
Chr08	irgsp1_rep	mRNA	27315970	27318463	.	+	.	ID=Os08t0545200-02;Name=Os08t0545200-02;Locus_id=Os08g0545200;Oryzabase Gene Symbol Synonym(s)=OsDH1%2C DH1;Oryzabase Gene Name Synonym(s)=dehydrogenase 1;Note=Alcohol dehydrogenase superfamily%2C zinc-containing protein.;Transcript_evidence=AK063995 (DDBJ%2C Best hit);ORF_evidence=NP_001149440.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),Alcohol dehydrogenase%2C zinc-type%2C conserved site (IPR002328),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-124-E11;Oryzabase=20375;Expression=AK063995;TENOR=Os08t0545200-02;KEGG=Os08t0545200-02 (EC:1.1.1.14)
Chr08	irgsp1_rep	five_prime_UTR	27315970	27316033	.	+	.	Parent=Os08t0545200-02
Chr08	irgsp1_rep	CDS	27316034	27316166	.	+	0	Parent=Os08t0545200-02
Chr08	irgsp1_rep	CDS	27316953	27317020	.	+	2	Parent=Os08t0545200-02
Chr08	irgsp1_rep	CDS	27317096	27317329	.	+	0	Parent=Os08t0545200-02
Chr08	irgsp1_rep	CDS	27317407	27318081	.	+	0	Parent=Os08t0545200-02
Chr08	irgsp1_rep	three_prime_UTR	27318082	27318463	.	+	.	Parent=Os08t0545200-02
Chr08	irgsp1_rep	mRNA	27317046	27318176	.	-	.	ID=Os08t0545300-01;Name=Os08t0545300-01;Locus_id=Os08g0545300;Note=Similar to NAD-dependent sorbitol dehydrogenase.;Transcript_evidence=AK108562 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-145-B12;Expression=AK108562;TENOR=Os08t0545300-01;KEGG=Os08t0545300-01
Chr08	irgsp1_rep	five_prime_UTR	27318069	27318176	.	-	.	Parent=Os08t0545300-01
Chr08	irgsp1_rep	CDS	27317406	27318068	.	-	0	Parent=Os08t0545300-01
Chr08	irgsp1_rep	three_prime_UTR	27317046	27317405	.	-	.	Parent=Os08t0545300-01
Chr08	irgsp1_rep	mRNA	27320678	27325475	.	-	.	ID=Os08t0545500-00;Name=Os08t0545500-00;Locus_id=Os08g0545500;CGSNL Gene Symbol=ERF28;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 28;Oryzabase Gene Symbol Synonym(s)=OsERF#028%2C OsERF028%2C OsERF28%2C OsERF#029%2C OsERF029%2C OsERF29%2C ERF29%2C DERF4%2C OsDERF4%2C AP2/EREBP#161%2C AP2/EREBP161%2C OsDREB1J%2C OsDREB1I%2C OsDREB1G;Oryzabase Gene Name Synonym(s)=drought-responsive ethylene response factor 4%2C drought-responsive ERF 4%2C ethylene response factor 28%2C ethylene response factor 29%2C APETALA2/ethylene-responsive element binding protein 161%2C Dehydration-responsive element-binding protein 1J%2C Dehydration-responsive element-binding protein 1I;Note=Similar to Dehydration-responsive element-binding protein 1J.;Transcript_evidence=EF028765 (DDBJ);ORF_evidence=Q0J3Y7 (UniProt);Oryzabase=9690;TENOR=Os08t0545500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	27324825	27325475	.	-	0	Parent=Os08t0545500-00
Chr08	irgsp1_rep	CDS	27320678	27321007	.	-	0	Parent=Os08t0545500-00
Chr08	irgsp1_rep	mRNA	27329441	27331356	.	+	.	ID=Os08t0545700-01;Name=Os08t0545700-01;Locus_id=Os08g0545700;Oryzabase Gene Name Synonym(s)=TraB family protein;Note=Similar to TraB protein-related.;Transcript_evidence=AK287580 (DDBJ%2C Best hit);ORF_evidence=NP_974926.1 (RefSeq);InterPro=Pheromone shutdown%2C TraB (IPR002816);NIAS_FLcDNA=J065040H15;Oryzabase=22647;TENOR=Os08t0545700-01;KEGG=Os08t0545700-01
Chr08	irgsp1_rep	five_prime_UTR	27329441	27329442	.	+	.	Parent=Os08t0545700-01
Chr08	irgsp1_rep	CDS	27329443	27329837	.	+	0	Parent=Os08t0545700-01
Chr08	irgsp1_rep	CDS	27329917	27330053	.	+	1	Parent=Os08t0545700-01
Chr08	irgsp1_rep	CDS	27330149	27330237	.	+	2	Parent=Os08t0545700-01
Chr08	irgsp1_rep	CDS	27330336	27330410	.	+	0	Parent=Os08t0545700-01
Chr08	irgsp1_rep	CDS	27330518	27330610	.	+	0	Parent=Os08t0545700-01
Chr08	irgsp1_rep	CDS	27330757	27330855	.	+	0	Parent=Os08t0545700-01
Chr08	irgsp1_rep	CDS	27331005	27331259	.	+	0	Parent=Os08t0545700-01
Chr08	irgsp1_rep	three_prime_UTR	27331260	27331356	.	+	.	Parent=Os08t0545700-01
Chr08	irgsp1_rep	mRNA	27332857	27333629	.	-	.	ID=Os08t0545800-01;Name=Os08t0545800-01;Locus_id=Os08g0545800;Note=Conserved hypothetical protein.;Transcript_evidence=AK109182 (DDBJ%2C Best hit);ORF_evidence=A2YXR3 (UniProt);NIAS_FLcDNA=002-156-A05;Expression=AK109182;TENOR=Os08t0545800-01;KEGG=Os08t0545800-01
Chr08	irgsp1_rep	five_prime_UTR	27333575	27333629	.	-	.	Parent=Os08t0545800-01
Chr08	irgsp1_rep	CDS	27333232	27333574	.	-	0	Parent=Os08t0545800-01
Chr08	irgsp1_rep	CDS	27332997	27333124	.	-	2	Parent=Os08t0545800-01
Chr08	irgsp1_rep	three_prime_UTR	27332857	27332996	.	-	.	Parent=Os08t0545800-01
Chr08	irgsp1_rep	mRNA	27333284	27333976	.	+	.	ID=Os08t0545850-00;Name=Os08t0545850-00;Locus_id=Os08g0545850;Note=Hypothetical gene.;Transcript_evidence=CU861688 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os08t0545850-00;KEGG=Os08t0545850-00
Chr08	irgsp1_rep	five_prime_UTR	27333284	27333298	.	+	.	Parent=Os08t0545850-00
Chr08	irgsp1_rep	CDS	27333299	27333622	.	+	0	Parent=Os08t0545850-00
Chr08	irgsp1_rep	three_prime_UTR	27333623	27333976	.	+	.	Parent=Os08t0545850-00
Chr08	irgsp1_rep	mRNA	27345271	27346904	.	-	.	ID=Os08t0545900-00;Name=Os08t0545900-00;Locus_id=Os08g0545900;Note=Multi antimicrobial extrusion protein MatE family protein.;Transcript_evidence=BT064910 (DDBJ);ORF_evidence=A6MD00 (UniProt);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);TENOR=Os08t0545900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	27345294	27346904	.	-	0	Parent=Os08t0545900-00
Chr08	irgsp1_rep	three_prime_UTR	27345271	27345293	.	-	.	Parent=Os08t0545900-00
Chr08	irgsp1_rep	mRNA	27345345	27346863	.	+	.	ID=Os08t0546000-00;Name=Os08t0546000-00;Locus_id=Os08g0546000;Note=Hypothetical protein.;Transcript_evidence=EU968520 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0546000-00
Chr08	irgsp1_rep	five_prime_UTR	27345345	27345353	.	+	.	Parent=Os08t0546000-00
Chr08	irgsp1_rep	CDS	27345354	27346043	.	+	0	Parent=Os08t0546000-00
Chr08	irgsp1_rep	CDS	27346203	27346863	.	+	0	Parent=Os08t0546000-00
Chr08	irgsp1_rep	mRNA	27357179	27358774	.	-	.	ID=Os08t0546100-00;Name=Os08t0546100-00;Locus_id=Os08g0546100;CGSNL Gene Symbol=BAG2;CGSNL Gene Name=BCL-2-ASSOCIATED ATHANOGENE 2;Oryzabase Gene Symbol Synonym(s)=OsBAG2;Oryzabase Gene Name Synonym(s)=Bcl-2-associated athanogene 2;Note=Similar to protein binding protein.;Transcript_evidence=FP095381 (DDBJ);ORF_evidence=B6TJD1 (UniProt);GO=Molecular Function: chaperone binding (GO:0051087);InterPro=BAG domain (IPR003103),Ubiquitin supergroup (IPR019955);Oryzabase=11551;TENOR=Os08t0546100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	27358551	27358774	.	-	.	Parent=Os08t0546100-00
Chr08	irgsp1_rep	five_prime_UTR	27358443	27358493	.	-	.	Parent=Os08t0546100-00
Chr08	irgsp1_rep	CDS	27357963	27358442	.	-	0	Parent=Os08t0546100-00
Chr08	irgsp1_rep	CDS	27357415	27357885	.	-	0	Parent=Os08t0546100-00
Chr08	irgsp1_rep	three_prime_UTR	27357179	27357414	.	-	.	Parent=Os08t0546100-00
Chr08	irgsp1_rep	mRNA	27364165	27364816	.	+	.	ID=Os08t0546300-01;Name=Os08t0546300-01;Locus_id=Os08g0546300;CGSNL Gene Symbol=OSC4;CGSNL Gene Name=ANTHER SPECIFIC PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=Osc4%2C OsC4%2C Osg4B%2C OsLTPc1%2C OsLtpIII.1%2C C4;Oryzabase Gene Name Synonym(s)=type C non-specific lipid transfer protein 1%2C non-specific lipid transfer protein c1%2C lipid transfer protein c1;Note=Similar to LTP-like protein.;Transcript_evidence=AK119794 (DDBJ%2C Best hit),AK064717 (DDBJ%2C Best hit);ORF_evidence=NP_001106005.1 (RefSeq);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=002-175-C03,002-118-E06;Oryzabase=8402;TENOR=Os08t0546300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	27364165	27364242	.	+	.	Parent=Os08t0546300-01
Chr08	irgsp1_rep	CDS	27364243	27364519	.	+	0	Parent=Os08t0546300-01
Chr08	irgsp1_rep	CDS	27364604	27364611	.	+	2	Parent=Os08t0546300-01
Chr08	irgsp1_rep	three_prime_UTR	27364612	27364816	.	+	.	Parent=Os08t0546300-01
Chr08	irgsp1_rep	mRNA	27365138	27370823	.	-	.	ID=Os08t0546400-01;Name=Os08t0546400-01;Locus_id=Os08g0546400;Note=UBX domain containing protein.;Transcript_evidence=AK070009 (DDBJ%2C Best hit);ORF_evidence=A6MD06 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=UBX (IPR001012),Ubiquitin interacting motif (IPR003903),UBA-like (IPR009060);NIAS_FLcDNA=J023036E15;Expression=AK070009;TENOR=Os08t0546400-01;KEGG=Os08t0546400-01
Chr08	irgsp1_rep	five_prime_UTR	27370699	27370823	.	-	.	Parent=Os08t0546400-01
Chr08	irgsp1_rep	CDS	27370615	27370698	.	-	0	Parent=Os08t0546400-01
Chr08	irgsp1_rep	CDS	27369035	27369096	.	-	0	Parent=Os08t0546400-01
Chr08	irgsp1_rep	CDS	27368427	27368937	.	-	1	Parent=Os08t0546400-01
Chr08	irgsp1_rep	CDS	27368262	27368345	.	-	0	Parent=Os08t0546400-01
Chr08	irgsp1_rep	CDS	27368068	27368174	.	-	0	Parent=Os08t0546400-01
Chr08	irgsp1_rep	CDS	27367546	27367777	.	-	1	Parent=Os08t0546400-01
Chr08	irgsp1_rep	CDS	27367262	27367450	.	-	0	Parent=Os08t0546400-01
Chr08	irgsp1_rep	CDS	27367012	27367176	.	-	0	Parent=Os08t0546400-01
Chr08	irgsp1_rep	CDS	27366344	27366487	.	-	0	Parent=Os08t0546400-01
Chr08	irgsp1_rep	CDS	27366210	27366266	.	-	0	Parent=Os08t0546400-01
Chr08	irgsp1_rep	CDS	27365404	27365517	.	-	0	Parent=Os08t0546400-01
Chr08	irgsp1_rep	three_prime_UTR	27365138	27365403	.	-	.	Parent=Os08t0546400-01
Chr08	irgsp1_rep	mRNA	27365243	27367409	.	+	.	ID=Os08t0546467-00;Name=Os08t0546467-00;Locus_id=Os08g0546467;Note=Hypothetical gene.;Transcript_evidence=BT016877 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0546467-00
Chr08	irgsp1_rep	five_prime_UTR	27365243	27365515	.	+	.	Parent=Os08t0546467-00
Chr08	irgsp1_rep	five_prime_UTR	27366208	27366262	.	+	.	Parent=Os08t0546467-00
Chr08	irgsp1_rep	five_prime_UTR	27366339	27366395	.	+	.	Parent=Os08t0546467-00
Chr08	irgsp1_rep	CDS	27366396	27366486	.	+	0	Parent=Os08t0546467-00
Chr08	irgsp1_rep	CDS	27367011	27367173	.	+	2	Parent=Os08t0546467-00
Chr08	irgsp1_rep	CDS	27367255	27367276	.	+	1	Parent=Os08t0546467-00
Chr08	irgsp1_rep	three_prime_UTR	27367277	27367409	.	+	.	Parent=Os08t0546467-00
Chr08	irgsp1_rep	mRNA	27372003	27372545	.	-	.	ID=Os08t0546500-00;Name=Os08t0546500-00;Locus_id=Os08g0546500;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os08t0546500-00
Chr08	irgsp1_rep	CDS	27372003	27372545	.	-	0	Parent=Os08t0546500-00
Chr08	irgsp1_rep	mRNA	27374678	27374883	.	+	.	ID=Os08t0546533-01;Name=Os08t0546533-01;Locus_id=Os08g0546533;Note=Non-protein coding transcript.;Transcript_evidence=AK242145 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J075151F19;TENOR=Os08t0546533-01
Chr08	irgsp1_rep	exon	27374678	27374883	.	+	.	Parent=Os08t0546533-01
Chr08	irgsp1_rep	mRNA	27374934	27375636	.	+	.	ID=Os08t0546600-01;Name=Os08t0546600-01;Locus_id=Os08g0546600;Note=Non-protein coding transcript.;Transcript_evidence=AK063184 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-112-B02;TENOR=Os08t0546600-01
Chr08	irgsp1_rep	exon	27374934	27375636	.	+	.	Parent=Os08t0546600-01
Chr08	irgsp1_rep	mRNA	27376052	27378939	.	-	.	ID=Os08t0546700-01;Name=Os08t0546700-01;Locus_id=Os08g0546700;Oryzabase Gene Symbol Synonym(s)=OsRhmbd14%2C RHMBD14;Oryzabase Gene Name Synonym(s)=Rhomboid 14%2C RHOMBOID 14;Note=Peptidase S54%2C rhomboid domain containing protein.;Transcript_evidence=AK061056 (DDBJ%2C Best hit);ORF_evidence=A6MD08 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Cellular Component: integral to membrane (GO:0016021),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S54%2C rhomboid (IPR002610),Peptidase S54%2C rhomboid domain (IPR022764);NIAS_FLcDNA=006-205-H06;Oryzabase=20070;Expression=AK061056;TENOR=Os08t0546700-01;KEGG=Os08t0546700-01
Chr08	irgsp1_rep	five_prime_UTR	27378863	27378939	.	-	.	Parent=Os08t0546700-01
Chr08	irgsp1_rep	CDS	27378582	27378862	.	-	0	Parent=Os08t0546700-01
Chr08	irgsp1_rep	CDS	27377628	27377791	.	-	1	Parent=Os08t0546700-01
Chr08	irgsp1_rep	CDS	27376976	27377142	.	-	2	Parent=Os08t0546700-01
Chr08	irgsp1_rep	CDS	27376646	27376893	.	-	0	Parent=Os08t0546700-01
Chr08	irgsp1_rep	CDS	27376330	27376441	.	-	1	Parent=Os08t0546700-01
Chr08	irgsp1_rep	three_prime_UTR	27376052	27376329	.	-	.	Parent=Os08t0546700-01
Chr08	irgsp1_rep	mRNA	27382872	27384470	.	-	.	ID=Os08t0546800-01;Name=Os08t0546800-01;Locus_id=Os08g0546800;RAP-DB Gene Symbol Synonym(s)=OsHsfB2b;RAP-DB Gene Name Synonym(s)=heat shock factor B2b;CGSNL Gene Symbol=HSFB2B;CGSNL Gene Name=HEAT STRESS TRANSCRIPTION FACTOR B2B;Oryzabase Gene Symbol Synonym(s)=HSfB2b%2C OsHsfB2b%2C OsHsf-21%2C rHsf2%2C HSF2%2C HSF21%2C OsHSF21;Oryzabase Gene Name Synonym(s)=Heat stress transcription factor B2b%2C Heat stress transcription factor B-2b%2C Heat stress transcription factor 21%2C Heat stress transcription factor 2;Note=Class B heat shock factor%2C Negative regulation of drought and salt tolerance;Transcript_evidence=AK101700;ORF_evidence=Q6Z9C8;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA-binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Cellular Component: nucleus (GO:0005634);InterPro=Winged helix-like DNA-binding domain superfamily (IPR036388),Winged helix DNA-binding domain superfamily (IPR036390),Heat shock factor (HSF)-type%2C DNA-binding (IPR000232);NIAS_FLcDNA=J033060E19;Manual Curation=July 28%2C 2020;Literature_PMID=23949687;Oryzabase=8562;Expression=AK101700;TENOR=Os08t0546800-01;KEGG=Os08t0546800-01
Chr08	irgsp1_rep	five_prime_UTR	27384388	27384470	.	-	.	Parent=Os08t0546800-01
Chr08	irgsp1_rep	CDS	27384067	27384387	.	-	0	Parent=Os08t0546800-01
Chr08	irgsp1_rep	CDS	27383114	27383965	.	-	0	Parent=Os08t0546800-01
Chr08	irgsp1_rep	three_prime_UTR	27382872	27383113	.	-	.	Parent=Os08t0546800-01
Chr08	irgsp1_rep	mRNA	27393304	27396084	.	-	.	ID=Os08t0546900-01;Name=Os08t0546900-01;Locus_id=Os08g0546900;Note=Similar to NC domain-containing protein.;Transcript_evidence=AK242310 (DDBJ%2C Best hit);ORF_evidence=A6MD14 (UniProt);InterPro=NC (IPR007053);NIAS_FLcDNA=J075194E11;TENOR=Os08t0546900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	27394311	27396084	.	-	.	Parent=Os08t0546900-01
Chr08	irgsp1_rep	CDS	27393522	27394310	.	-	0	Parent=Os08t0546900-01
Chr08	irgsp1_rep	three_prime_UTR	27393304	27393521	.	-	.	Parent=Os08t0546900-01
Chr08	irgsp1_rep	mRNA	27397948	27401077	.	+	.	ID=Os08t0547000-01;Name=Os08t0547000-01;Locus_id=Os08g0547000;Note=RNA recognition motif%2C RNP-1 domain containing protein.;Transcript_evidence=AK120698 (DDBJ%2C Best hit);ORF_evidence=NP_001105534.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013170L18;Expression=AK120698;TENOR=Os08t0547000-01;KEGG=Os08t0547000-01
Chr08	irgsp1_rep	five_prime_UTR	27397948	27398093	.	+	.	Parent=Os08t0547000-01
Chr08	irgsp1_rep	CDS	27398094	27398301	.	+	0	Parent=Os08t0547000-01
Chr08	irgsp1_rep	CDS	27399259	27399380	.	+	2	Parent=Os08t0547000-01
Chr08	irgsp1_rep	CDS	27399469	27399697	.	+	0	Parent=Os08t0547000-01
Chr08	irgsp1_rep	CDS	27399883	27399944	.	+	2	Parent=Os08t0547000-01
Chr08	irgsp1_rep	CDS	27400020	27400283	.	+	0	Parent=Os08t0547000-01
Chr08	irgsp1_rep	three_prime_UTR	27400284	27401077	.	+	.	Parent=Os08t0547000-01
Chr08	irgsp1_rep	mRNA	27403444	27404227	.	+	.	ID=Os08t0547100-01;Name=Os08t0547100-01;Locus_id=Os08g0547100;Note=Similar to 6-phosphogluconolactonase.;Transcript_evidence=AK241584 (DDBJ%2C Best hit);ORF_evidence=NP_001151956.1 (RefSeq);NIAS_FLcDNA=J065181O15;TENOR=Os08t0547100-01
Chr08	irgsp1_rep	five_prime_UTR	27403444	27403568	.	+	.	Parent=Os08t0547100-01
Chr08	irgsp1_rep	CDS	27403569	27404227	.	+	0	Parent=Os08t0547100-01
Chr08	irgsp1_rep	mRNA	27403675	27406344	.	+	.	ID=Os08t0547100-02;Name=Os08t0547100-02;Locus_id=Os08g0547100;Note=6-phosphogluconolactonase domain containing protein.;Transcript_evidence=AK109374 (DDBJ%2C Best hit);ORF_evidence=NP_001151956.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: pentose-phosphate shunt (GO:0006098),Molecular Function: 6-phosphogluconolactonase activity (GO:0017057);InterPro=6-phosphogluconolactonase%2C DevB-type (IPR005900),Glucosamine/galactosamine-6-phosphate isomerase (IPR006148);NIAS_FLcDNA=006-208-H02;Expression=AK109374;TENOR=Os08t0547100-02;KEGG=Os08t0547100-02 (EC:3.1.1.31)
Chr08	irgsp1_rep	five_prime_UTR	27403675	27403859	.	+	.	Parent=Os08t0547100-02
Chr08	irgsp1_rep	CDS	27403860	27404227	.	+	0	Parent=Os08t0547100-02
Chr08	irgsp1_rep	CDS	27404334	27404469	.	+	1	Parent=Os08t0547100-02
Chr08	irgsp1_rep	CDS	27405594	27406073	.	+	0	Parent=Os08t0547100-02
Chr08	irgsp1_rep	three_prime_UTR	27406074	27406344	.	+	.	Parent=Os08t0547100-02
Chr08	irgsp1_rep	mRNA	27403794	27406438	.	+	.	ID=Os08t0547100-03;Name=Os08t0547100-03;Locus_id=Os08g0547100;Note=6-phosphogluconolactonase domain containing protein.;Transcript_evidence=AK073704 (DDBJ%2C Best hit);ORF_evidence=A6MD23 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: pentose-phosphate shunt (GO:0006098),Molecular Function: 6-phosphogluconolactonase activity (GO:0017057);InterPro=6-phosphogluconolactonase%2C DevB-type (IPR005900),Glucosamine/galactosamine-6-phosphate isomerase (IPR006148);NIAS_FLcDNA=J033060E10;Expression=AK073704;TENOR=Os08t0547100-03;KEGG=Os08t0547100-03 (EC:3.1.1.31)
Chr08	irgsp1_rep	five_prime_UTR	27403794	27403859	.	+	.	Parent=Os08t0547100-03
Chr08	irgsp1_rep	CDS	27403860	27404227	.	+	0	Parent=Os08t0547100-03
Chr08	irgsp1_rep	CDS	27404334	27404469	.	+	1	Parent=Os08t0547100-03
Chr08	irgsp1_rep	CDS	27405594	27406073	.	+	0	Parent=Os08t0547100-03
Chr08	irgsp1_rep	three_prime_UTR	27406074	27406438	.	+	.	Parent=Os08t0547100-03
Chr08	irgsp1_rep	mRNA	27408979	27413880	.	+	.	ID=Os08t0547200-01;Name=Os08t0547200-01;Locus_id=Os08g0547200;Note=RabGAP/TBC domain containing protein.;Transcript_evidence=AK101130 (DDBJ%2C Best hit),AK119577 (DDBJ%2C Best hit);ORF_evidence=NP_199009.2 (RefSeq);GO=Biological Process: regulation of Rab GTPase activity (GO:0032313),Cellular Component: intracellular (GO:0005622),Molecular Function: Rab GTPase activator activity (GO:0005097);InterPro=Rab-GAP/TBC domain (IPR000195);NIAS_FLcDNA=J033026C08,002-117-B08;TENOR=Os08t0547200-01
Chr08	irgsp1_rep	five_prime_UTR	27408979	27409164	.	+	.	Parent=Os08t0547200-01
Chr08	irgsp1_rep	CDS	27409165	27409400	.	+	0	Parent=Os08t0547200-01
Chr08	irgsp1_rep	CDS	27410089	27410224	.	+	1	Parent=Os08t0547200-01
Chr08	irgsp1_rep	CDS	27410361	27410410	.	+	0	Parent=Os08t0547200-01
Chr08	irgsp1_rep	CDS	27411683	27411736	.	+	1	Parent=Os08t0547200-01
Chr08	irgsp1_rep	CDS	27412326	27413547	.	+	1	Parent=Os08t0547200-01
Chr08	irgsp1_rep	three_prime_UTR	27413548	27413880	.	+	.	Parent=Os08t0547200-01
Chr08	irgsp1_rep	mRNA	27420633	27422835	.	-	.	ID=Os08t0547300-01;Name=Os08t0547300-01;Locus_id=Os08g0547300;RAP-DB Gene Symbol Synonym(s)=BSR2;RAP-DB Gene Name Synonym(s)=BROAD-SPECTRUM RESISTANCE2;CGSNL Gene Symbol=BSR2;CGSNL Gene Name=BROAD-SPECTRUM RESISTANCE 2;Oryzabase Gene Symbol Synonym(s)=OsBSR2%2C CYP78A15%2C OsCYP78A15;Oryzabase Gene Name Synonym(s)=BROAD-SPECTRUM RESISTANCE2%2C CytoChrome P450 78A15;Note=CytoChrome P450 protein%2C CYP78A family protein%2C Disease resistance%2C Regulation of growth rate and seed size;Transcript_evidence=AK072163;ORF_evidence=Q6Z9D5;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 superfamily (IPR036396),CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J013131L23;Manual Curation=April 8%2C 2020;Literature_PMID=30679785;Oryzabase=23582;Expression=AK072163;TENOR=Os08t0547300-01;KEGG=Os08t0547300-01
Chr08	irgsp1_rep	five_prime_UTR	27422733	27422835	.	-	.	Parent=Os08t0547300-01
Chr08	irgsp1_rep	CDS	27421713	27422732	.	-	0	Parent=Os08t0547300-01
Chr08	irgsp1_rep	CDS	27420974	27421609	.	-	0	Parent=Os08t0547300-01
Chr08	irgsp1_rep	three_prime_UTR	27420633	27420973	.	-	.	Parent=Os08t0547300-01
Chr08	irgsp1_rep	mRNA	27420967	27422836	.	+	.	ID=Os08t0547350-00;Name=Os08t0547350-00;Locus_id=Os08g0547350;Note=Hypothetical protein.;Transcript_evidence=tplb0044m18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0547350-00
Chr08	irgsp1_rep	five_prime_UTR	27420967	27421608	.	+	.	Parent=Os08t0547350-00
Chr08	irgsp1_rep	five_prime_UTR	27421712	27422259	.	+	.	Parent=Os08t0547350-00
Chr08	irgsp1_rep	CDS	27422260	27422790	.	+	0	Parent=Os08t0547350-00
Chr08	irgsp1_rep	three_prime_UTR	27422791	27422836	.	+	.	Parent=Os08t0547350-00
Chr08	irgsp1_rep	mRNA	27435159	27442438	.	-	.	ID=Os08t0547500-01;Name=Os08t0547500-01;Locus_id=Os08g0547500;Note=Kinesin%2C motor domain domain containing protein.;Transcript_evidence=AK102208 (DDBJ%2C Best hit);ORF_evidence=Q6Z9D2 (UniProt);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752),Protein of unknown function DUF3490 (IPR021881);NIAS_FLcDNA=J033087H08;TENOR=Os08t0547500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	27442316	27442438	.	-	.	Parent=Os08t0547500-01
Chr08	irgsp1_rep	CDS	27442176	27442315	.	-	0	Parent=Os08t0547500-01
Chr08	irgsp1_rep	CDS	27441857	27442074	.	-	1	Parent=Os08t0547500-01
Chr08	irgsp1_rep	CDS	27441387	27441476	.	-	2	Parent=Os08t0547500-01
Chr08	irgsp1_rep	CDS	27441184	27441284	.	-	2	Parent=Os08t0547500-01
Chr08	irgsp1_rep	CDS	27440995	27441108	.	-	0	Parent=Os08t0547500-01
Chr08	irgsp1_rep	CDS	27440797	27440878	.	-	0	Parent=Os08t0547500-01
Chr08	irgsp1_rep	CDS	27440650	27440717	.	-	2	Parent=Os08t0547500-01
Chr08	irgsp1_rep	CDS	27440505	27440570	.	-	0	Parent=Os08t0547500-01
Chr08	irgsp1_rep	CDS	27440306	27440430	.	-	0	Parent=Os08t0547500-01
Chr08	irgsp1_rep	CDS	27439752	27440085	.	-	1	Parent=Os08t0547500-01
Chr08	irgsp1_rep	CDS	27439547	27439663	.	-	0	Parent=Os08t0547500-01
Chr08	irgsp1_rep	CDS	27438418	27439470	.	-	0	Parent=Os08t0547500-01
Chr08	irgsp1_rep	CDS	27435847	27436145	.	-	0	Parent=Os08t0547500-01
Chr08	irgsp1_rep	CDS	27435450	27435756	.	-	1	Parent=Os08t0547500-01
Chr08	irgsp1_rep	three_prime_UTR	27435159	27435449	.	-	.	Parent=Os08t0547500-01
Chr08	irgsp1_rep	mRNA	27435126	27442176	.	-	.	ID=Os08t0547500-02;Name=Os08t0547500-02;Locus_id=Os08g0547500;Note=Hypothetical conserved gene.;Transcript_evidence=AK065731 (DDBJ%2C Best hit);ORF_evidence=Q6Z9D2 (UniProt);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752),Protein of unknown function DUF3490 (IPR021881);NIAS_FLcDNA=J013036C06;Expression=AK065731;TENOR=Os08t0547500-02;KEGG=Os08t0547500-02
Chr08	irgsp1_rep	five_prime_UTR	27442110	27442176	.	-	.	Parent=Os08t0547500-02
Chr08	irgsp1_rep	CDS	27441857	27442109	.	-	0	Parent=Os08t0547500-02
Chr08	irgsp1_rep	CDS	27441387	27441476	.	-	2	Parent=Os08t0547500-02
Chr08	irgsp1_rep	CDS	27441184	27441284	.	-	2	Parent=Os08t0547500-02
Chr08	irgsp1_rep	CDS	27440995	27441108	.	-	0	Parent=Os08t0547500-02
Chr08	irgsp1_rep	CDS	27440797	27440878	.	-	0	Parent=Os08t0547500-02
Chr08	irgsp1_rep	CDS	27440650	27440717	.	-	2	Parent=Os08t0547500-02
Chr08	irgsp1_rep	CDS	27440505	27440570	.	-	0	Parent=Os08t0547500-02
Chr08	irgsp1_rep	CDS	27440306	27440430	.	-	0	Parent=Os08t0547500-02
Chr08	irgsp1_rep	CDS	27439752	27440085	.	-	1	Parent=Os08t0547500-02
Chr08	irgsp1_rep	CDS	27439547	27439663	.	-	0	Parent=Os08t0547500-02
Chr08	irgsp1_rep	CDS	27438418	27439470	.	-	0	Parent=Os08t0547500-02
Chr08	irgsp1_rep	CDS	27435847	27436148	.	-	0	Parent=Os08t0547500-02
Chr08	irgsp1_rep	CDS	27435450	27435756	.	-	1	Parent=Os08t0547500-02
Chr08	irgsp1_rep	three_prime_UTR	27435126	27435449	.	-	.	Parent=Os08t0547500-02
Chr08	irgsp1_rep	mRNA	27435471	27442095	.	+	.	ID=Os08t0547550-00;Name=Os08t0547550-00;Locus_id=Os08g0547550;Note=Hypothetical protein.;Transcript_evidence=tplb0030a08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0547550-00
Chr08	irgsp1_rep	five_prime_UTR	27435471	27435809	.	+	.	Parent=Os08t0547550-00
Chr08	irgsp1_rep	five_prime_UTR	27435884	27436125	.	+	.	Parent=Os08t0547550-00
Chr08	irgsp1_rep	five_prime_UTR	27438439	27438853	.	+	.	Parent=Os08t0547550-00
Chr08	irgsp1_rep	CDS	27438854	27439007	.	+	0	Parent=Os08t0547550-00
Chr08	irgsp1_rep	CDS	27439389	27439651	.	+	2	Parent=Os08t0547550-00
Chr08	irgsp1_rep	three_prime_UTR	27439652	27440084	.	+	.	Parent=Os08t0547550-00
Chr08	irgsp1_rep	three_prime_UTR	27440305	27440418	.	+	.	Parent=Os08t0547550-00
Chr08	irgsp1_rep	three_prime_UTR	27440490	27440582	.	+	.	Parent=Os08t0547550-00
Chr08	irgsp1_rep	three_prime_UTR	27440659	27440787	.	+	.	Parent=Os08t0547550-00
Chr08	irgsp1_rep	three_prime_UTR	27440981	27441111	.	+	.	Parent=Os08t0547550-00
Chr08	irgsp1_rep	three_prime_UTR	27441187	27441259	.	+	.	Parent=Os08t0547550-00
Chr08	irgsp1_rep	three_prime_UTR	27441363	27441478	.	+	.	Parent=Os08t0547550-00
Chr08	irgsp1_rep	three_prime_UTR	27441862	27442095	.	+	.	Parent=Os08t0547550-00
Chr08	irgsp1_rep	mRNA	27458454	27459629	.	-	.	ID=Os08t0547600-00;Name=Os08t0547600-00;Locus_id=Os08g0547600;Note=Similar to SRS7 (SHI-RELATED SEQUENCE 7).;Transcript_evidence=AK335496 (DDBJ);ORF_evidence=NP_001031069.1 (RefSeq);InterPro=Zinc finger%2C lateral root primordium type 1 (IPR006510),Protein of unknown function DUF702 (IPR007818);TENOR=Os08t0547600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	27458454	27459629	.	-	0	Parent=Os08t0547600-00
Chr08	irgsp1_rep	mRNA	27473747	27475042	.	-	.	ID=Os08t0547800-01;Name=Os08t0547800-01;Locus_id=Os08g0547800;Note=Alpha/beta hydrolase fold-3 domain containing protein.;Transcript_evidence=AK106054 (DDBJ%2C Best hit);ORF_evidence=A2YXT1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=001-206-F06;Expression=AK106054;TENOR=Os08t0547800-01;KEGG=Os08t0547800-01
Chr08	irgsp1_rep	five_prime_UTR	27474996	27475042	.	-	.	Parent=Os08t0547800-01
Chr08	irgsp1_rep	CDS	27474003	27474995	.	-	0	Parent=Os08t0547800-01
Chr08	irgsp1_rep	three_prime_UTR	27473747	27474002	.	-	.	Parent=Os08t0547800-01
Chr08	irgsp1_rep	mRNA	27479062	27481059	.	-	.	ID=Os08t0547900-01;Name=Os08t0547900-01;Locus_id=Os08g0547900;Oryzabase Gene Name Synonym(s)=cytoChrome P450%2C cytoChrome P450 76M5-like;Note=Similar to Flavonoid 3-monooxygenase.;Transcript_evidence=AK103567 (DDBJ%2C Best hit);ORF_evidence=B4FQ24 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J033132M06;Oryzabase=22648;TENOR=Os08t0547900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	27480691	27481059	.	-	.	Parent=Os08t0547900-01
Chr08	irgsp1_rep	CDS	27480193	27480690	.	-	0	Parent=Os08t0547900-01
Chr08	irgsp1_rep	CDS	27479468	27480109	.	-	0	Parent=Os08t0547900-01
Chr08	irgsp1_rep	three_prime_UTR	27479062	27479467	.	-	.	Parent=Os08t0547900-01
Chr08	irgsp1_rep	mRNA	27479496	27480188	.	+	.	ID=Os08t0547951-00;Name=Os08t0547951-00;Locus_id=Os08g0547951;Note=Hypothetical protein.;Transcript_evidence=EU942896 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0547951-00
Chr08	irgsp1_rep	five_prime_UTR	27479496	27479645	.	+	.	Parent=Os08t0547951-00
Chr08	irgsp1_rep	CDS	27479646	27479948	.	+	0	Parent=Os08t0547951-00
Chr08	irgsp1_rep	three_prime_UTR	27479949	27480188	.	+	.	Parent=Os08t0547951-00
Chr08	irgsp1_rep	mRNA	27486398	27488798	.	-	.	ID=Os08t0548000-01;Name=Os08t0548000-01;Locus_id=Os08g0548000;Note=Myb transcription factor domain containing protein.;Transcript_evidence=AK069869 (DDBJ%2C Best hit);ORF_evidence=Q8GRY3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J023038A16;Expression=AK069869;TENOR=Os08t0548000-01;KEGG=Os08t0548000-01
Chr08	irgsp1_rep	five_prime_UTR	27488689	27488798	.	-	.	Parent=Os08t0548000-01
Chr08	irgsp1_rep	CDS	27488663	27488688	.	-	0	Parent=Os08t0548000-01
Chr08	irgsp1_rep	CDS	27486705	27487230	.	-	1	Parent=Os08t0548000-01
Chr08	irgsp1_rep	three_prime_UTR	27486398	27486704	.	-	.	Parent=Os08t0548000-01
Chr08	irgsp1_rep	mRNA	27497231	27501004	.	+	.	ID=Os08t0548200-01;Name=Os08t0548200-01;Locus_id=Os08g0548200;Note=Similar to ER lumen protein retaining receptor-like protein.;Transcript_evidence=AK102617 (DDBJ%2C Best hit),AK061053 (DDBJ%2C Best hit);ORF_evidence=NP_001148789.1 (RefSeq);GO=Biological Process: protein retention in ER lumen (GO:0006621),Cellular Component: integral to membrane (GO:0016021),Molecular Function: ER retention sequence binding (GO:0046923);InterPro=ER lumen protein retaining receptor (IPR000133);NIAS_FLcDNA=J033099F17,006-205-G07;TENOR=Os08t0548200-01
Chr08	irgsp1_rep	five_prime_UTR	27497231	27497384	.	+	.	Parent=Os08t0548200-01
Chr08	irgsp1_rep	CDS	27497385	27497607	.	+	0	Parent=Os08t0548200-01
Chr08	irgsp1_rep	CDS	27499134	27499333	.	+	2	Parent=Os08t0548200-01
Chr08	irgsp1_rep	CDS	27499747	27499887	.	+	0	Parent=Os08t0548200-01
Chr08	irgsp1_rep	CDS	27499972	27500052	.	+	0	Parent=Os08t0548200-01
Chr08	irgsp1_rep	CDS	27500595	27500719	.	+	0	Parent=Os08t0548200-01
Chr08	irgsp1_rep	CDS	27500794	27500842	.	+	1	Parent=Os08t0548200-01
Chr08	irgsp1_rep	three_prime_UTR	27500843	27501004	.	+	.	Parent=Os08t0548200-01
Chr08	irgsp1_rep	mRNA	27497263	27501004	.	+	.	ID=Os08t0548200-02;Name=Os08t0548200-02;Locus_id=Os08g0548200;Note=Similar to ER lumen protein retaining receptor-like protein.;Transcript_evidence=AK060043 (DDBJ%2C Best hit);ORF_evidence=NP_001148789.1 (RefSeq);GO=Biological Process: protein retention in ER lumen (GO:0006621),Cellular Component: integral to membrane (GO:0016021),Molecular Function: ER retention sequence binding (GO:0046923);InterPro=ER lumen protein retaining receptor (IPR000133);NIAS_FLcDNA=006-304-F02;Expression=AK060043;TENOR=Os08t0548200-02;KEGG=Os08t0548200-02
Chr08	irgsp1_rep	five_prime_UTR	27497263	27497384	.	+	.	Parent=Os08t0548200-02
Chr08	irgsp1_rep	CDS	27497385	27497607	.	+	0	Parent=Os08t0548200-02
Chr08	irgsp1_rep	CDS	27499134	27499333	.	+	2	Parent=Os08t0548200-02
Chr08	irgsp1_rep	CDS	27499747	27499887	.	+	0	Parent=Os08t0548200-02
Chr08	irgsp1_rep	CDS	27499972	27500052	.	+	0	Parent=Os08t0548200-02
Chr08	irgsp1_rep	CDS	27500595	27500719	.	+	0	Parent=Os08t0548200-02
Chr08	irgsp1_rep	CDS	27500794	27500842	.	+	1	Parent=Os08t0548200-02
Chr08	irgsp1_rep	three_prime_UTR	27500843	27501004	.	+	.	Parent=Os08t0548200-02
Chr08	irgsp1_rep	mRNA	27502328	27504972	.	+	.	ID=Os08t0548300-01;Name=Os08t0548300-01;Locus_id=Os08g0548300;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK073266 (DDBJ%2C Best hit);ORF_evidence=NP_001150748.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J033029A20;Expression=AK073266;TENOR=Os08t0548300-01;KEGG=Os08t0548300-01
Chr08	irgsp1_rep	five_prime_UTR	27502328	27502396	.	+	.	Parent=Os08t0548300-01
Chr08	irgsp1_rep	CDS	27502397	27502576	.	+	0	Parent=Os08t0548300-01
Chr08	irgsp1_rep	CDS	27502679	27502988	.	+	0	Parent=Os08t0548300-01
Chr08	irgsp1_rep	CDS	27503107	27503207	.	+	2	Parent=Os08t0548300-01
Chr08	irgsp1_rep	CDS	27503862	27503903	.	+	0	Parent=Os08t0548300-01
Chr08	irgsp1_rep	CDS	27504005	27504126	.	+	0	Parent=Os08t0548300-01
Chr08	irgsp1_rep	CDS	27504196	27504304	.	+	1	Parent=Os08t0548300-01
Chr08	irgsp1_rep	CDS	27504551	27504604	.	+	0	Parent=Os08t0548300-01
Chr08	irgsp1_rep	three_prime_UTR	27504605	27504972	.	+	.	Parent=Os08t0548300-01
Chr08	irgsp1_rep	mRNA	27507734	27508477	.	+	.	ID=Os08t0548400-00;Name=Os08t0548400-00;Locus_id=Os08g0548400;Oryzabase Gene Symbol Synonym(s)=OsDjC66;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C66%2C rice DJC23 homolog;Note=Similar to chaperone protein dnaJ 11.;Transcript_evidence=CT835957 (DDBJ%2C Best hit);ORF_evidence=NP_001151820.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Heat shock protein DnaJ%2C conserved site (IPR018253);Oryzabase=12223;TENOR=Os08t0548400-00;KEGG=Os08t0548400-00
Chr08	irgsp1_rep	five_prime_UTR	27507734	27507773	.	+	.	Parent=Os08t0548400-00
Chr08	irgsp1_rep	CDS	27507774	27508214	.	+	0	Parent=Os08t0548400-00
Chr08	irgsp1_rep	three_prime_UTR	27508215	27508477	.	+	.	Parent=Os08t0548400-00
Chr08	irgsp1_rep	mRNA	27511196	27513554	.	+	.	ID=Os08t0548500-01;Name=Os08t0548500-01;Locus_id=Os08g0548500;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK070951 (DDBJ%2C Best hit);ORF_evidence=B7FF22 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023075G04;Expression=AK070951;TENOR=Os08t0548500-01;KEGG=Os08t0548500-01
Chr08	irgsp1_rep	five_prime_UTR	27511196	27511399	.	+	.	Parent=Os08t0548500-01
Chr08	irgsp1_rep	CDS	27511400	27513340	.	+	0	Parent=Os08t0548500-01
Chr08	irgsp1_rep	three_prime_UTR	27513341	27513554	.	+	.	Parent=Os08t0548500-01
Chr08	irgsp1_rep	mRNA	27514808	27516115	.	-	.	ID=Os08t0548600-01;Name=Os08t0548600-01;Locus_id=Os08g0548600;Note=Hypothetical conserved gene.;Transcript_evidence=AK105245 (DDBJ%2C Best hit);ORF_evidence=B9FYG2 (UniProt);NIAS_FLcDNA=001-113-G08;Expression=AK105245;TENOR=Os08t0548600-01;KEGG=Os08t0548600-01
Chr08	irgsp1_rep	five_prime_UTR	27516043	27516115	.	-	.	Parent=Os08t0548600-01
Chr08	irgsp1_rep	CDS	27516010	27516042	.	-	0	Parent=Os08t0548600-01
Chr08	irgsp1_rep	CDS	27515405	27515548	.	-	0	Parent=Os08t0548600-01
Chr08	irgsp1_rep	three_prime_UTR	27514808	27515404	.	-	.	Parent=Os08t0548600-01
Chr08	irgsp1_rep	mRNA	27519879	27520601	.	-	.	ID=Os08t0548650-00;Name=Os08t0548650-00;Locus_id=Os08g0548650;Note=Hypothetical gene.;Transcript_evidence=EU967040 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0548650-00
Chr08	irgsp1_rep	five_prime_UTR	27520601	27520601	.	-	.	Parent=Os08t0548650-00
Chr08	irgsp1_rep	CDS	27519879	27520600	.	-	0	Parent=Os08t0548650-00
Chr08	irgsp1_rep	mRNA	27520994	27521450	.	+	.	ID=Os08t0548700-01;Name=Os08t0548700-01;Locus_id=Os08g0548700;Note=Hypothetical conserved gene.;Transcript_evidence=AK058257 (DDBJ%2C Best hit);ORF_evidence=B9FYG3 (UniProt);NIAS_FLcDNA=001-012-D06;Expression=AK058257;TENOR=Os08t0548700-01;KEGG=Os08t0548700-01
Chr08	irgsp1_rep	CDS	27520994	27521203	.	+	0	Parent=Os08t0548700-01
Chr08	irgsp1_rep	three_prime_UTR	27521204	27521450	.	+	.	Parent=Os08t0548700-01
Chr08	irgsp1_rep	mRNA	27533329	27536724	.	+	.	ID=Os08t0548900-01;Name=Os08t0548900-01;Locus_id=Os08g0548900;Note=Similar to Proteasome subunit alpha type 7 (EC 3.4.25.1) (20S proteasome alpha subunit D) (20S proteasome subunit alpha-4).;Transcript_evidence=AK061808 (DDBJ%2C Best hit),AK098875 (DDBJ%2C Best hit);ORF_evidence=B9ETZ1 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603),Cellular Component: proteasome core complex (GO:0005839),Cellular Component: proteasome core complex%2C alpha-subunit complex (GO:0019773),Molecular Function: endopeptidase activity (GO:0004175),Molecular Function: threonine-type endopeptidase activity (GO:0004298);InterPro=Proteasome%2C alpha-subunit%2C conserved site (IPR000426),Proteasome%2C subunit alpha/beta (IPR001353),Proteasome A-type subunit (IPR023332);NIAS_FLcDNA=001-040-A07,J013001D12;Expression=AK061808;TENOR=Os08t0548900-01;KEGG=Os08t0548900-01 (EC:3.4.25.1)
Chr08	irgsp1_rep	five_prime_UTR	27533329	27533459	.	+	.	Parent=Os08t0548900-01
Chr08	irgsp1_rep	CDS	27533460	27533632	.	+	0	Parent=Os08t0548900-01
Chr08	irgsp1_rep	CDS	27533704	27534118	.	+	1	Parent=Os08t0548900-01
Chr08	irgsp1_rep	CDS	27536404	27536565	.	+	0	Parent=Os08t0548900-01
Chr08	irgsp1_rep	three_prime_UTR	27536566	27536724	.	+	.	Parent=Os08t0548900-01
Chr08	irgsp1_rep	mRNA	27547971	27549173	.	-	.	ID=Os08t0549000-01;Name=Os08t0549000-01;Locus_id=Os08g0549000;RAP-DB Gene Symbol Synonym(s)=OsGL1A;RAP-DB Gene Name Synonym(s)=GLABRA1A;Oryzabase Gene Symbol Synonym(s)=R2R3-MYB%2C OsGL1A%2C GL1A%2C DLN218%2C OsDLN218;Oryzabase Gene Name Synonym(s)=GLABRA1A%2C GLABRA 1A%2C DLN repressor 218%2C DLN motif protein 218;Note=R2R3 MYB transcription factor%2C Homologue of Arabidopsis transcription factor GL1;Transcript_evidence=Inferred from literature;ORF_evidence=Q6ZJJ2;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeobox-like domain superfamily (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930);Manual Curation=July 20%2C 2018;Literature_PMID=26758286;Oryzabase=16291
Chr08	irgsp1_rep	five_prime_UTR	27549131	27549173	.	-	.	Parent=Os08t0549000-01
Chr08	irgsp1_rep	CDS	27548868	27549130	.	-	0	Parent=Os08t0549000-01
Chr08	irgsp1_rep	CDS	27548323	27548791	.	-	1	Parent=Os08t0549000-01
Chr08	irgsp1_rep	three_prime_UTR	27547971	27548322	.	-	.	Parent=Os08t0549000-01
Chr08	irgsp1_rep	mRNA	27555334	27559312	.	-	.	ID=Os08t0549100-01;Name=Os08t0549100-01;Locus_id=Os08g0549100;CGSNL Gene Symbol=APX4;CGSNL Gene Name=ASCORBATE PEROXIDASE 4;Oryzabase Gene Symbol Synonym(s)=OsAPx4%2C OsAPx04%2C OSAPX4%2C APx4%2C pAPX4;Oryzabase Gene Name Synonym(s)=ascorbate peroxidase 4%2C Peroxisomal APX 4;Note=Similar to Peroxisome type ascorbate peroxidase.;Transcript_evidence=AK070842 (DDBJ%2C Best hit),AK104490 (DDBJ%2C Best hit);ORF_evidence=Q94IC3 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Plant ascorbate peroxidase (IPR002207),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J023074O14,006-302-B09;Oryzabase=8954;Expression=AK070842;TENOR=Os08t0549100-01;KEGG=Os08t0549100-01 (EC:1.11.1.11)
Chr08	irgsp1_rep	five_prime_UTR	27559197	27559312	.	-	.	Parent=Os08t0549100-01
Chr08	irgsp1_rep	CDS	27559084	27559196	.	-	0	Parent=Os08t0549100-01
Chr08	irgsp1_rep	CDS	27558004	27558128	.	-	1	Parent=Os08t0549100-01
Chr08	irgsp1_rep	CDS	27557496	27557545	.	-	2	Parent=Os08t0549100-01
Chr08	irgsp1_rep	CDS	27557270	27557335	.	-	0	Parent=Os08t0549100-01
Chr08	irgsp1_rep	CDS	27557141	27557189	.	-	0	Parent=Os08t0549100-01
Chr08	irgsp1_rep	CDS	27556487	27556569	.	-	2	Parent=Os08t0549100-01
Chr08	irgsp1_rep	CDS	27556316	27556395	.	-	0	Parent=Os08t0549100-01
Chr08	irgsp1_rep	CDS	27556118	27556220	.	-	1	Parent=Os08t0549100-01
Chr08	irgsp1_rep	CDS	27555570	27555776	.	-	0	Parent=Os08t0549100-01
Chr08	irgsp1_rep	three_prime_UTR	27555334	27555569	.	-	.	Parent=Os08t0549100-01
Chr08	irgsp1_rep	mRNA	27560631	27565182	.	+	.	ID=Os08t0549200-01;Name=Os08t0549200-01;Locus_id=Os08g0549200;CGSNL Gene Symbol=BGAL10;CGSNL Gene Name=BETA-GALACTOSIDASE 10;Oryzabase Gene Symbol Synonym(s)=OsBgal10%2C OsBGal10;Note=Glycoside hydrolase%2C family 35 protein.;Transcript_evidence=AK069066 (DDBJ%2C Best hit);ORF_evidence=B9FYG4 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: sugar binding (GO:0005529),Molecular Function: cation binding (GO:0043169);InterPro=D-galactoside/L-rhamnose binding SUEL lectin domain (IPR000922),Glycoside hydrolase%2C family 35 (IPR001944),Galactose-binding domain-like (IPR008979),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 35%2C conserved site (IPR019801);NIAS_FLcDNA=J023007A22;Oryzabase=8284;Expression=AK069066;TENOR=Os08t0549200-01;KEGG=Os08t0549200-01
Chr08	irgsp1_rep	five_prime_UTR	27560631	27560690	.	+	.	Parent=Os08t0549200-01
Chr08	irgsp1_rep	CDS	27560691	27560972	.	+	0	Parent=Os08t0549200-01
Chr08	irgsp1_rep	CDS	27561076	27561188	.	+	0	Parent=Os08t0549200-01
Chr08	irgsp1_rep	CDS	27561305	27561371	.	+	1	Parent=Os08t0549200-01
Chr08	irgsp1_rep	CDS	27561552	27561644	.	+	0	Parent=Os08t0549200-01
Chr08	irgsp1_rep	CDS	27561758	27561901	.	+	0	Parent=Os08t0549200-01
Chr08	irgsp1_rep	CDS	27562102	27562196	.	+	0	Parent=Os08t0549200-01
Chr08	irgsp1_rep	CDS	27562362	27562467	.	+	1	Parent=Os08t0549200-01
Chr08	irgsp1_rep	CDS	27562570	27562654	.	+	0	Parent=Os08t0549200-01
Chr08	irgsp1_rep	CDS	27562756	27562874	.	+	2	Parent=Os08t0549200-01
Chr08	irgsp1_rep	CDS	27562984	27563336	.	+	0	Parent=Os08t0549200-01
Chr08	irgsp1_rep	CDS	27563419	27563528	.	+	1	Parent=Os08t0549200-01
Chr08	irgsp1_rep	CDS	27563645	27563754	.	+	2	Parent=Os08t0549200-01
Chr08	irgsp1_rep	CDS	27564044	27564913	.	+	0	Parent=Os08t0549200-01
Chr08	irgsp1_rep	three_prime_UTR	27564914	27565182	.	+	.	Parent=Os08t0549200-01
Chr08	irgsp1_rep	mRNA	27561766	27565153	.	+	.	ID=Os08t0549200-02;Name=Os08t0549200-02;Locus_id=Os08g0549200;CGSNL Gene Symbol=BGAL10;CGSNL Gene Name=BETA-GALACTOSIDASE 10;Oryzabase Gene Symbol Synonym(s)=OsBgal10%2C OsBGal10;Note=Similar to Beta-galactosidase.;Transcript_evidence=AK070916 (DDBJ%2C Best hit);ORF_evidence=B9FYG4 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: sugar binding (GO:0005529),Molecular Function: cation binding (GO:0043169);InterPro=D-galactoside/L-rhamnose binding SUEL lectin domain (IPR000922),Glycoside hydrolase%2C family 35 (IPR001944),Galactose-binding domain-like (IPR008979),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J023065N10;Oryzabase=8284;Expression=AK070916;TENOR=Os08t0549200-02;KEGG=Os08t0549200-02
Chr08	irgsp1_rep	five_prime_UTR	27561766	27561766	.	+	.	Parent=Os08t0549200-02
Chr08	irgsp1_rep	CDS	27561767	27561901	.	+	0	Parent=Os08t0549200-02
Chr08	irgsp1_rep	CDS	27562102	27562196	.	+	0	Parent=Os08t0549200-02
Chr08	irgsp1_rep	CDS	27562362	27562467	.	+	1	Parent=Os08t0549200-02
Chr08	irgsp1_rep	CDS	27562570	27562654	.	+	0	Parent=Os08t0549200-02
Chr08	irgsp1_rep	CDS	27562756	27562874	.	+	2	Parent=Os08t0549200-02
Chr08	irgsp1_rep	CDS	27562984	27563336	.	+	0	Parent=Os08t0549200-02
Chr08	irgsp1_rep	CDS	27563419	27563528	.	+	1	Parent=Os08t0549200-02
Chr08	irgsp1_rep	CDS	27563645	27563754	.	+	2	Parent=Os08t0549200-02
Chr08	irgsp1_rep	CDS	27564044	27564913	.	+	0	Parent=Os08t0549200-02
Chr08	irgsp1_rep	three_prime_UTR	27564914	27565153	.	+	.	Parent=Os08t0549200-02
Chr08	irgsp1_rep	mRNA	27565854	27568595	.	-	.	ID=Os08t0549300-01;Name=Os08t0549300-01;Locus_id=Os08g0549300;Oryzabase Gene Name Synonym(s)=Acyl carrier protein%2C acyl carrier protein 3;Note=Similar to Acyl carrier protein III%2C chloroplast precursor (ACP III).;Transcript_evidence=AK120938 (DDBJ%2C Best hit);ORF_evidence=P15543 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Molecular Function: acyl carrier activity (GO:0000036),Molecular Function: phosphopantetheine binding (GO:0031177),Molecular Function: cofactor binding (GO:0048037);InterPro=Acyl carrier protein (ACP) (IPR003231),Phosphopantetheine attachment site (IPR006162),Phosphopantetheine-binding (IPR006163),Acyl carrier protein-like (IPR009081);NIAS_FLcDNA=J023037A21;Oryzabase=15730;Expression=AK120938;TENOR=Os08t0549300-01;KEGG=Os08t0549300-01
Chr08	irgsp1_rep	five_prime_UTR	27568550	27568595	.	-	.	Parent=Os08t0549300-01
Chr08	irgsp1_rep	CDS	27568499	27568549	.	-	0	Parent=Os08t0549300-01
Chr08	irgsp1_rep	CDS	27567456	27567554	.	-	0	Parent=Os08t0549300-01
Chr08	irgsp1_rep	CDS	27566786	27566908	.	-	0	Parent=Os08t0549300-01
Chr08	irgsp1_rep	CDS	27566114	27566257	.	-	0	Parent=Os08t0549300-01
Chr08	irgsp1_rep	three_prime_UTR	27565854	27566113	.	-	.	Parent=Os08t0549300-01
Chr08	irgsp1_rep	mRNA	27566146	27568633	.	+	.	ID=Os08t0549450-00;Name=Os08t0549450-00;Locus_id=Os08g0549450;Note=Hypothetical gene.;Transcript_evidence=BT019098 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0549450-00
Chr08	irgsp1_rep	five_prime_UTR	27566146	27566159	.	+	.	Parent=Os08t0549450-00
Chr08	irgsp1_rep	CDS	27566160	27566255	.	+	0	Parent=Os08t0549450-00
Chr08	irgsp1_rep	CDS	27566784	27566894	.	+	0	Parent=Os08t0549450-00
Chr08	irgsp1_rep	CDS	27567444	27567572	.	+	0	Parent=Os08t0549450-00
Chr08	irgsp1_rep	CDS	27568518	27568633	.	+	0	Parent=Os08t0549450-00
Chr08	irgsp1_rep	mRNA	27576171	27576997	.	+	.	ID=Os08t0549600-01;Name=Os08t0549600-01;Locus_id=Os08g0549600;RAP-DB Gene Symbol Synonym(s)=OsFD4%2C bZIP69/OsFD4;RAP-DB Gene Name Synonym(s)=b-ZIP transcription factor 69;CGSNL Gene Symbol=BZIP69;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 69;Oryzabase Gene Symbol Synonym(s)=OsbZIP69%2C OsFD4;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 69%2C FD Transcription Factor 4;Note=FD-like bZIP transcription factor%2C Component of a Florigen Activation Complex (FAC)%2C Promotion of the floral transition;Transcript_evidence=CT836023 (Guangluai4);ORF_evidence=Q6ZJI7;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA-binding transcription factor activity (GO:0003700);InterPro=Basic-leucine zipper domain (IPR004827);Manual Curation=August 3%2C 2020;Literature_PMID=32737885;Oryzabase=10149;TENOR=Os08t0549600-00;KEGG=Os08t0549600-00
Chr08	irgsp1_rep	five_prime_UTR	27576171	27576175	.	+	.	Parent=Os08t0549600-01
Chr08	irgsp1_rep	CDS	27576176	27576529	.	+	0	Parent=Os08t0549600-01
Chr08	irgsp1_rep	CDS	27576614	27576700	.	+	0	Parent=Os08t0549600-01
Chr08	irgsp1_rep	three_prime_UTR	27576701	27576997	.	+	.	Parent=Os08t0549600-01
Chr08	irgsp1_rep	mRNA	27583001	27583821	.	+	.	ID=Os08t0549900-00;Name=Os08t0549900-00;Locus_id=Os08g0549900;Note=Conserved hypothetical protein.;Transcript_evidence=CT835945 (DDBJ%2C Best hit);ORF_evidence=A2YXV1 (UniProt);TENOR=Os08t0549900-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	27583001	27583174	.	+	.	Parent=Os08t0549900-00
Chr08	irgsp1_rep	CDS	27583175	27583521	.	+	0	Parent=Os08t0549900-00
Chr08	irgsp1_rep	CDS	27583528	27583558	.	+	1	Parent=Os08t0549900-00
Chr08	irgsp1_rep	three_prime_UTR	27583559	27583821	.	+	.	Parent=Os08t0549900-00
Chr08	irgsp1_rep	mRNA	27585872	27586502	.	-	.	ID=Os08t0549950-00;Name=Os08t0549950-00;Locus_id=Os08g0549950;Note=Hypothetical gene.;Transcript_evidence=EU949362 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0549950-00;KEGG=Os08t0549950-00
Chr08	irgsp1_rep	five_prime_UTR	27586501	27586502	.	-	.	Parent=Os08t0549950-00
Chr08	irgsp1_rep	CDS	27586129	27586500	.	-	0	Parent=Os08t0549950-00
Chr08	irgsp1_rep	three_prime_UTR	27585872	27586128	.	-	.	Parent=Os08t0549950-00
Chr08	irgsp1_rep	mRNA	27586402	27586751	.	+	.	ID=Os08t0550000-00;Name=Os08t0550000-00;Locus_id=Os08g0550000;Note=Non-protein coding transcript.;Transcript_evidence=CT836017 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os08t0550000-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	exon	27586402	27586751	.	+	.	Parent=Os08t0550000-00
Chr08	irgsp1_rep	mRNA	27588536	27592035	.	-	.	ID=Os08t0550100-01;Name=Os08t0550100-01;Locus_id=Os08g0550100;CGSNL Gene Symbol=RPN3;CGSNL Gene Name=19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 3;Oryzabase Gene Symbol Synonym(s)=OsRpn3%2C Rpn3;Oryzabase Gene Name Synonym(s)=19S regulatory particle non-ATPase subunit 3%2C RP non-ATPase 3;Note=Similar to 26S proteasome subunit RPN3a.;Transcript_evidence=AK061287 (DDBJ%2C Best hit);ORF_evidence=NP_001149170.1 (RefSeq);GO=Biological Process: regulation of protein catabolic process (GO:0042176),Cellular Component: proteasome complex (GO:0000502),Molecular Function: protein binding (GO:0005515),Molecular Function: enzyme regulator activity (GO:0030234);InterPro=Proteasome component (PCI) domain (IPR000717),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),PCI/PINT associated module (IPR013143),26S proteasome regulatory subunit%2C C-terminal (IPR013586);NIAS_FLcDNA=006-212-H08;Oryzabase=20564;Expression=AK061287;TENOR=Os08t0550100-01;KEGG=Os08t0550100-01
Chr08	irgsp1_rep	five_prime_UTR	27591975	27592035	.	-	.	Parent=Os08t0550100-01
Chr08	irgsp1_rep	CDS	27591899	27591974	.	-	0	Parent=Os08t0550100-01
Chr08	irgsp1_rep	CDS	27591621	27591811	.	-	2	Parent=Os08t0550100-01
Chr08	irgsp1_rep	CDS	27590334	27590471	.	-	0	Parent=Os08t0550100-01
Chr08	irgsp1_rep	CDS	27590122	27590258	.	-	0	Parent=Os08t0550100-01
Chr08	irgsp1_rep	CDS	27589974	27590028	.	-	1	Parent=Os08t0550100-01
Chr08	irgsp1_rep	CDS	27589769	27589879	.	-	0	Parent=Os08t0550100-01
Chr08	irgsp1_rep	CDS	27589296	27589535	.	-	0	Parent=Os08t0550100-01
Chr08	irgsp1_rep	CDS	27588708	27589220	.	-	0	Parent=Os08t0550100-01
Chr08	irgsp1_rep	three_prime_UTR	27588536	27588707	.	-	.	Parent=Os08t0550100-01
Chr08	irgsp1_rep	mRNA	27588427	27588785	.	-	.	ID=Os08t0550100-02;Name=Os08t0550100-02;Locus_id=Os08g0550100;CGSNL Gene Symbol=RPN3;CGSNL Gene Name=19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 3;Oryzabase Gene Symbol Synonym(s)=OsRpn3%2C Rpn3;Oryzabase Gene Name Synonym(s)=19S regulatory particle non-ATPase subunit 3%2C RP non-ATPase 3;Note=Non-protein coding transcript.;Transcript_evidence=AK058374 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-014-G09;Oryzabase=20564;TENOR=Os08t0550100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	exon	27588427	27588785	.	-	.	Parent=Os08t0550100-02
Chr08	irgsp1_rep	mRNA	27592835	27598698	.	-	.	ID=Os08t0550200-01;Name=Os08t0550200-01;Locus_id=Os08g0550200;Note=Multi antimicrobial extrusion protein MatE family protein.;Transcript_evidence=AK070238 (DDBJ%2C Best hit);ORF_evidence=NP_173744.1 (RefSeq);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);NIAS_FLcDNA=J023043J23;Expression=AK070238;TENOR=Os08t0550200-01;KEGG=Os08t0550200-01
Chr08	irgsp1_rep	five_prime_UTR	27598634	27598698	.	-	.	Parent=Os08t0550200-01
Chr08	irgsp1_rep	CDS	27598268	27598633	.	-	0	Parent=Os08t0550200-01
Chr08	irgsp1_rep	CDS	27594165	27594793	.	-	0	Parent=Os08t0550200-01
Chr08	irgsp1_rep	CDS	27593136	27593709	.	-	1	Parent=Os08t0550200-01
Chr08	irgsp1_rep	three_prime_UTR	27592835	27593135	.	-	.	Parent=Os08t0550200-01
Chr08	irgsp1_rep	mRNA	27593194	27598462	.	+	.	ID=Os08t0550301-00;Name=Os08t0550301-00;Locus_id=Os08g0550301;Note=Hypothetical protein.;Transcript_evidence=tplb0045m16 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0550301-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	27593194	27593195	.	+	.	Parent=Os08t0550301-00
Chr08	irgsp1_rep	CDS	27593196	27593702	.	+	0	Parent=Os08t0550301-00
Chr08	irgsp1_rep	CDS	27594154	27594219	.	+	0	Parent=Os08t0550301-00
Chr08	irgsp1_rep	three_prime_UTR	27594220	27594790	.	+	.	Parent=Os08t0550301-00
Chr08	irgsp1_rep	three_prime_UTR	27598260	27598462	.	+	.	Parent=Os08t0550301-00
Chr08	irgsp1_rep	mRNA	27602301	27603934	.	-	.	ID=Os08t0550400-01;Name=Os08t0550400-01;Locus_id=Os08g0550400;Note=Similar to RING-H2 finger protein ATL5P.;Transcript_evidence=AK105338 (DDBJ%2C Best hit);ORF_evidence=NP_001151289.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=001-118-F06;Expression=AK105338;TENOR=Os08t0550400-01;KEGG=Os08t0550400-01
Chr08	irgsp1_rep	five_prime_UTR	27603782	27603934	.	-	.	Parent=Os08t0550400-01
Chr08	irgsp1_rep	CDS	27603613	27603781	.	-	0	Parent=Os08t0550400-01
Chr08	irgsp1_rep	CDS	27603328	27603506	.	-	2	Parent=Os08t0550400-01
Chr08	irgsp1_rep	CDS	27602611	27603045	.	-	0	Parent=Os08t0550400-01
Chr08	irgsp1_rep	three_prime_UTR	27602301	27602610	.	-	.	Parent=Os08t0550400-01
Chr08	irgsp1_rep	mRNA	27612534	27614930	.	+	.	ID=Os08t0550500-01;Name=Os08t0550500-01;Locus_id=Os08g0550500;Note=Similar to Glutathione s-transferase (Fragment).;Transcript_evidence=AK058423 (DDBJ%2C Best hit);ORF_evidence=A6N0N0 (UniProt);NIAS_FLcDNA=001-015-D11;Expression=AK058423;TENOR=Os08t0550500-01;KEGG=Os08t0550500-01
Chr08	irgsp1_rep	five_prime_UTR	27612534	27612772	.	+	.	Parent=Os08t0550500-01
Chr08	irgsp1_rep	CDS	27612773	27613382	.	+	0	Parent=Os08t0550500-01
Chr08	irgsp1_rep	CDS	27613836	27614677	.	+	2	Parent=Os08t0550500-01
Chr08	irgsp1_rep	three_prime_UTR	27614678	27614930	.	+	.	Parent=Os08t0550500-01
Chr08	irgsp1_rep	mRNA	27617790	27621251	.	+	.	ID=Os08t0550600-01;Name=Os08t0550600-01;Locus_id=Os08g0550600;CGSNL Gene Symbol=CHX2;CGSNL Gene Name=CATION/H+ EXCHANGER  2;Oryzabase Gene Symbol Synonym(s)=OsCHX02%2C CHX02%2C OsCHX2;Oryzabase Gene Name Synonym(s)=cation/H+ exchanger  2;Note=Hypothetical conserved gene.;Transcript_evidence=AK287775 (DDBJ%2C Best hit);ORF_evidence=NP_001175687.1 (RefSeq);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: solute:hydrogen antiporter activity (GO:0015299);InterPro=Cation/H+ exchanger (IPR006153);NIAS_FLcDNA=J065169P08;Oryzabase=22364;TENOR=Os08t0550600-01;KEGG=Os08t0550600-01
Chr08	irgsp1_rep	five_prime_UTR	27617790	27618151	.	+	.	Parent=Os08t0550600-01
Chr08	irgsp1_rep	five_prime_UTR	27618476	27618858	.	+	.	Parent=Os08t0550600-01
Chr08	irgsp1_rep	CDS	27618859	27620169	.	+	0	Parent=Os08t0550600-01
Chr08	irgsp1_rep	three_prime_UTR	27620170	27621251	.	+	.	Parent=Os08t0550600-01
Chr08	irgsp1_rep	mRNA	27622346	27623105	.	-	.	ID=Os08t0550700-00;Name=Os08t0550700-00;Locus_id=Os08g0550700;CGSNL Gene Symbol=SAUR36;CGSNL Gene Name=SMALL AUXIN-UP RNA 36;Oryzabase Gene Symbol Synonym(s)=OsSAUR36;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 36;Note=Similar to Auxin induced protein.;Transcript_evidence=CT835911 (DDBJ%2C Best hit);ORF_evidence=B6TT53 (UniProt);InterPro=Auxin responsive SAUR protein (IPR003676);Oryzabase=9161;TENOR=Os08t0550700-00;KEGG=Os08t0550700-00
Chr08	irgsp1_rep	five_prime_UTR	27623026	27623105	.	-	.	Parent=Os08t0550700-00
Chr08	irgsp1_rep	CDS	27622594	27623025	.	-	0	Parent=Os08t0550700-00
Chr08	irgsp1_rep	three_prime_UTR	27622346	27622593	.	-	.	Parent=Os08t0550700-00
Chr08	irgsp1_rep	mRNA	27629841	27631079	.	-	.	ID=Os08t0550850-01;Name=Os08t0550850-01;Locus_id=Os08g0550850;Note=Hypothetical gene.;Transcript_evidence=AK241244 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065128P07;TENOR=Os08t0550850-01;KEGG=Os08t0550850-01
Chr08	irgsp1_rep	five_prime_UTR	27630900	27631079	.	-	.	Parent=Os08t0550850-01
Chr08	irgsp1_rep	CDS	27630588	27630899	.	-	0	Parent=Os08t0550850-01
Chr08	irgsp1_rep	three_prime_UTR	27630113	27630587	.	-	.	Parent=Os08t0550850-01
Chr08	irgsp1_rep	three_prime_UTR	27629841	27629988	.	-	.	Parent=Os08t0550850-01
Chr08	irgsp1_rep	mRNA	27634982	27638852	.	+	.	ID=Os08t0551200-00;Name=Os08t0551200-00;Locus_id=Os08g0551200;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001062449.2 (RefSeq);InterPro=Domain of unknown function DUF632 (IPR006867),Domain of unknown function DUF630 (IPR006868);TENOR=Os08t0551200-00;KEGG=Os08t0551200-00
Chr08	irgsp1_rep	CDS	27634982	27636251	.	+	0	Parent=Os08t0551200-00
Chr08	irgsp1_rep	CDS	27636353	27636498	.	+	2	Parent=Os08t0551200-00
Chr08	irgsp1_rep	CDS	27637120	27637343	.	+	0	Parent=Os08t0551200-00
Chr08	irgsp1_rep	CDS	27638060	27638852	.	+	1	Parent=Os08t0551200-00
Chr08	irgsp1_rep	mRNA	27634971	27639542	.	-	.	ID=Os08t0551225-01;Name=Os08t0551225-01;Locus_id=Os08g0551225;Note=Hypothetical gene.;Transcript_evidence=AK288886 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090079L08;TENOR=Os08t0551225-01
Chr08	irgsp1_rep	five_prime_UTR	27638060	27639542	.	-	.	Parent=Os08t0551225-01
Chr08	irgsp1_rep	five_prime_UTR	27637120	27637343	.	-	.	Parent=Os08t0551225-01
Chr08	irgsp1_rep	five_prime_UTR	27636353	27636498	.	-	.	Parent=Os08t0551225-01
Chr08	irgsp1_rep	five_prime_UTR	27635399	27636251	.	-	.	Parent=Os08t0551225-01
Chr08	irgsp1_rep	CDS	27634971	27635398	.	-	0	Parent=Os08t0551225-01
Chr08	irgsp1_rep	mRNA	27643356	27644156	.	+	.	ID=Os08t0551300-00;Name=Os08t0551300-00;Locus_id=Os08g0551300;Note=Protein of unknown function DUF241%2C plant family protein.;Transcript_evidence=EU953740 (DDBJ);ORF_evidence=NP_001062450.1 (RefSeq);InterPro=Protein of unknown function DUF241%2C plant (IPR004320);TENOR=Os08t0551300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	27643356	27643368	.	+	.	Parent=Os08t0551300-00
Chr08	irgsp1_rep	CDS	27643369	27644076	.	+	0	Parent=Os08t0551300-00
Chr08	irgsp1_rep	three_prime_UTR	27644077	27644156	.	+	.	Parent=Os08t0551300-00
Chr08	irgsp1_rep	mRNA	27645208	27645921	.	+	.	ID=Os08t0551366-00;Name=Os08t0551366-00;Locus_id=Os08g0551366;Note=Protein of unknown function DUF241%2C plant domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6Z3H5 (UniProt);InterPro=Protein of unknown function DUF241%2C plant (IPR004320);TENOR=Os08t0551366-00
Chr08	irgsp1_rep	CDS	27645208	27645921	.	+	0	Parent=Os08t0551366-00
Chr08	irgsp1_rep	mRNA	27646932	27647735	.	-	.	ID=Os08t0551432-00;Name=Os08t0551432-00;Locus_id=Os08g0551432;Note=Hypothetical protein.;Transcript_evidence=AK356938 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0551432-00
Chr08	irgsp1_rep	five_prime_UTR	27647558	27647735	.	-	.	Parent=Os08t0551432-00
Chr08	irgsp1_rep	CDS	27647360	27647557	.	-	0	Parent=Os08t0551432-00
Chr08	irgsp1_rep	CDS	27647037	27647243	.	-	0	Parent=Os08t0551432-00
Chr08	irgsp1_rep	three_prime_UTR	27646932	27647036	.	-	.	Parent=Os08t0551432-00
Chr08	irgsp1_rep	mRNA	27646938	27647642	.	+	.	ID=Os08t0551500-00;Name=Os08t0551500-00;Locus_id=Os08g0551500;Note=Protein of unknown function DUF241%2C plant family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001062451.1 (RefSeq);InterPro=Protein of unknown function DUF241%2C plant (IPR004320);TENOR=Os08t0551500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	27646938	27647642	.	+	0	Parent=Os08t0551500-00
Chr08	irgsp1_rep	mRNA	27647781	27648439	.	-	.	ID=Os08t0551600-01;Name=Os08t0551600-01;Locus_id=Os08g0551600;Note=Non-protein coding transcript.;Transcript_evidence=AK105180 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-105-F10;TENOR=Os08t0551600-01
Chr08	irgsp1_rep	exon	27648306	27648439	.	-	.	Parent=Os08t0551600-01
Chr08	irgsp1_rep	exon	27647781	27648175	.	-	.	Parent=Os08t0551600-01
Chr08	irgsp1_rep	mRNA	27648996	27651627	.	-	.	ID=Os08t0551700-01;Name=Os08t0551700-01;Locus_id=Os08g0551700;Note=Non-protein coding transcript.;Transcript_evidence=AK106569 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-110-H08;TENOR=Os08t0551700-01
Chr08	irgsp1_rep	exon	27650784	27651627	.	-	.	Parent=Os08t0551700-01
Chr08	irgsp1_rep	exon	27648996	27650681	.	-	.	Parent=Os08t0551700-01
Chr08	irgsp1_rep	mRNA	27651568	27652508	.	+	.	ID=Os08t0551900-00;Name=Os08t0551900-00;Locus_id=Os08g0551900;Note=Hypothetical conserved gene.;Transcript_evidence=EU953740 (DDBJ);ORF_evidence=Q6Z3H3 (UniProt);InterPro=Protein of unknown function DUF241%2C plant (IPR004320);TENOR=Os08t0551900-00;KEGG=Os08t0551900-00
Chr08	irgsp1_rep	five_prime_UTR	27651568	27651645	.	+	.	Parent=Os08t0551900-00
Chr08	irgsp1_rep	CDS	27651646	27652377	.	+	0	Parent=Os08t0551900-00
Chr08	irgsp1_rep	three_prime_UTR	27652378	27652508	.	+	.	Parent=Os08t0551900-00
Chr08	irgsp1_rep	mRNA	27652529	27654345	.	+	.	ID=Os08t0552000-00;Name=Os08t0552000-00;Locus_id=Os08g0552000;Note=Hypothetical conserved gene.;Transcript_evidence=AK335638 (DDBJ);ORF_evidence=Q6Z3H2 (UniProt);InterPro=Protein of unknown function DUF241%2C plant (IPR004320);TENOR=Os08t0552000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	27652529	27653079	.	+	.	Parent=Os08t0552000-00
Chr08	irgsp1_rep	five_prime_UTR	27653328	27653497	.	+	.	Parent=Os08t0552000-00
Chr08	irgsp1_rep	CDS	27653498	27654202	.	+	0	Parent=Os08t0552000-00
Chr08	irgsp1_rep	three_prime_UTR	27654203	27654345	.	+	.	Parent=Os08t0552000-00
Chr08	irgsp1_rep	mRNA	27655402	27656790	.	+	.	ID=Os08t0552100-00;Name=Os08t0552100-00;Locus_id=Os08g0552100;Note=Hypothetical conserved gene.;Transcript_evidence=AK335638 (DDBJ);ORF_evidence=Q6Z3H1 (UniProt);InterPro=Protein of unknown function DUF241%2C plant (IPR004320);TENOR=Os08t0552100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	27655402	27655938	.	+	.	Parent=Os08t0552100-00
Chr08	irgsp1_rep	CDS	27655939	27656646	.	+	0	Parent=Os08t0552100-00
Chr08	irgsp1_rep	three_prime_UTR	27656647	27656790	.	+	.	Parent=Os08t0552100-00
Chr08	irgsp1_rep	mRNA	27656890	27661085	.	-	.	ID=Os08t0552200-01;Name=Os08t0552200-01;Locus_id=Os08g0552200;Note=Hypothetical protein.;Transcript_evidence=AK120301 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013052H03;Expression=AK120301;TENOR=Os08t0552200-01;KEGG=Os08t0552200-01
Chr08	irgsp1_rep	five_prime_UTR	27660883	27661085	.	-	.	Parent=Os08t0552200-01
Chr08	irgsp1_rep	five_prime_UTR	27659920	27660005	.	-	.	Parent=Os08t0552200-01
Chr08	irgsp1_rep	CDS	27659572	27659919	.	-	0	Parent=Os08t0552200-01
Chr08	irgsp1_rep	three_prime_UTR	27658921	27659571	.	-	.	Parent=Os08t0552200-01
Chr08	irgsp1_rep	three_prime_UTR	27657274	27658336	.	-	.	Parent=Os08t0552200-01
Chr08	irgsp1_rep	three_prime_UTR	27656890	27657115	.	-	.	Parent=Os08t0552200-01
Chr08	irgsp1_rep	mRNA	27656997	27658451	.	+	.	ID=Os08t0552300-00;Name=Os08t0552300-00;Locus_id=Os08g0552300;Note=Protein of unknown function DUF241%2C plant family protein.;Transcript_evidence=AK335638 (DDBJ);ORF_evidence=NP_001062453.2 (RefSeq);InterPro=Protein of unknown function DUF241%2C plant (IPR004320);TENOR=Os08t0552300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	27656997	27657598	.	+	.	Parent=Os08t0552300-00
Chr08	irgsp1_rep	CDS	27657599	27658306	.	+	0	Parent=Os08t0552300-00
Chr08	irgsp1_rep	three_prime_UTR	27658307	27658451	.	+	.	Parent=Os08t0552300-00
Chr08	irgsp1_rep	mRNA	27658643	27660092	.	+	.	ID=Os08t0552333-00;Name=Os08t0552333-00;Locus_id=Os08g0552333;Note=Protein of unknown function DUF241%2C plant domain containing protein.;Transcript_evidence=AK335638 (DDBJ);ORF_evidence=A3BVK3 (UniProt);InterPro=Protein of unknown function DUF241%2C plant (IPR004320);TENOR=Os08t0552333-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	27658643	27659224	.	+	.	Parent=Os08t0552333-00
Chr08	irgsp1_rep	CDS	27659225	27659932	.	+	0	Parent=Os08t0552333-00
Chr08	irgsp1_rep	three_prime_UTR	27659933	27660092	.	+	.	Parent=Os08t0552333-00
Chr08	irgsp1_rep	mRNA	27665567	27667468	.	+	.	ID=Os08t0552400-00;Name=Os08t0552400-00;Locus_id=Os08g0552400;Note=Hypothetical conserved gene.;Transcript_evidence=AK335638 (DDBJ);ORF_evidence=B8B9E4 (UniProt);InterPro=Protein of unknown function DUF241%2C plant (IPR004320);TENOR=Os08t0552400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	27665567	27665992	.	+	.	Parent=Os08t0552400-00
Chr08	irgsp1_rep	five_prime_UTR	27666073	27666497	.	+	.	Parent=Os08t0552400-00
Chr08	irgsp1_rep	CDS	27666498	27667235	.	+	0	Parent=Os08t0552400-00
Chr08	irgsp1_rep	three_prime_UTR	27667236	27667468	.	+	.	Parent=Os08t0552400-00
Chr08	irgsp1_rep	mRNA	27669898	27670797	.	-	.	ID=Os08t0552633-00;Name=Os08t0552633-00;Locus_id=Os08g0552633;Note=Hypothetical protein.;Transcript_evidence=AK356938 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0552633-00
Chr08	irgsp1_rep	five_prime_UTR	27670631	27670797	.	-	.	Parent=Os08t0552633-00
Chr08	irgsp1_rep	CDS	27670368	27670630	.	-	0	Parent=Os08t0552633-00
Chr08	irgsp1_rep	CDS	27670085	27670247	.	-	1	Parent=Os08t0552633-00
Chr08	irgsp1_rep	three_prime_UTR	27669898	27670084	.	-	.	Parent=Os08t0552633-00
Chr08	irgsp1_rep	mRNA	27672019	27672526	.	+	.	ID=Os08t0552666-00;Name=Os08t0552666-00;Locus_id=Os08g0552666;Note=Conserved hypothetical protein.;Transcript_evidence=EU953740 (DDBJ);ORF_evidence=Q6Z3I8 (UniProt);TENOR=Os08t0552666-00
Chr08	irgsp1_rep	CDS	27672019	27672408	.	+	0	Parent=Os08t0552666-00
Chr08	irgsp1_rep	three_prime_UTR	27672409	27672526	.	+	.	Parent=Os08t0552666-00
Chr08	irgsp1_rep	mRNA	27672078	27673330	.	-	.	ID=Os08t0552700-00;Name=Os08t0552700-00;Locus_id=Os08g0552700;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001175691.1 (RefSeq);TENOR=Os08t0552700-00;KEGG=Os08t0552700-00
Chr08	irgsp1_rep	CDS	27673257	27673330	.	-	0	Parent=Os08t0552700-00
Chr08	irgsp1_rep	CDS	27672929	27672983	.	-	1	Parent=Os08t0552700-00
Chr08	irgsp1_rep	CDS	27672078	27672410	.	-	0	Parent=Os08t0552700-00
Chr08	irgsp1_rep	mRNA	27673598	27674323	.	+	.	ID=Os08t0552800-00;Name=Os08t0552800-00;Locus_id=Os08g0552800;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6Z3I7 (UniProt);InterPro=Protein of unknown function DUF241%2C plant (IPR004320);TENOR=Os08t0552800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	27673598	27674323	.	+	0	Parent=Os08t0552800-00
Chr08	irgsp1_rep	mRNA	27675520	27676439	.	+	.	ID=Os08t0552900-00;Name=Os08t0552900-00;Locus_id=Os08g0552900;Note=Protein of unknown function DUF241%2C plant domain containing protein.;Transcript_evidence=BT087366 (DDBJ);ORF_evidence=Q6Z3I6 (UniProt);InterPro=Protein of unknown function DUF241%2C plant (IPR004320);TENOR=Os08t0552900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	27675520	27675589	.	+	.	Parent=Os08t0552900-00
Chr08	irgsp1_rep	CDS	27675590	27676321	.	+	0	Parent=Os08t0552900-00
Chr08	irgsp1_rep	three_prime_UTR	27676322	27676439	.	+	.	Parent=Os08t0552900-00
Chr08	irgsp1_rep	mRNA	27669431	27670789	.	+	.	ID=Os08t0553000-00;Name=Os08t0553000-00;Locus_id=Os08g0553000;Note=Protein of unknown function DUF241%2C plant domain containing protein.;Transcript_evidence=AK335638 (DDBJ);ORF_evidence=NP_001175690.1 (RefSeq);InterPro=Protein of unknown function DUF241%2C plant (IPR004320);TENOR=Os08t0553000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	27669431	27669824	.	+	.	Parent=Os08t0553000-00
Chr08	irgsp1_rep	CDS	27669825	27670643	.	+	0	Parent=Os08t0553000-00
Chr08	irgsp1_rep	three_prime_UTR	27670644	27670789	.	+	.	Parent=Os08t0553000-00
Chr08	irgsp1_rep	mRNA	27677447	27678390	.	+	.	ID=Os08t0553050-00;Name=Os08t0553050-00;Locus_id=Os08g0553050;Note=Hypothetical conserved gene.;Transcript_evidence=AK331747 (DDBJ);ORF_evidence=NP_001175692.1 (RefSeq);InterPro=Protein of unknown function DUF241%2C plant (IPR004320);TENOR=Os08t0553050-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	27677447	27677572	.	+	.	Parent=Os08t0553050-00
Chr08	irgsp1_rep	CDS	27677573	27678250	.	+	0	Parent=Os08t0553050-00
Chr08	irgsp1_rep	three_prime_UTR	27678251	27678390	.	+	.	Parent=Os08t0553050-00
Chr08	irgsp1_rep	mRNA	27679902	27682169	.	+	.	ID=Os08t0553100-00;Name=Os08t0553100-00;Locus_id=Os08g0553100;Note=Hypothetical conserved gene.;Transcript_evidence=AK335638 (DDBJ);ORF_evidence=Q6Z3G7 (UniProt);InterPro=Protein of unknown function DUF241%2C plant (IPR004320);TENOR=Os08t0553100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	27679902	27681305	.	+	.	Parent=Os08t0553100-00
Chr08	irgsp1_rep	CDS	27681306	27682013	.	+	0	Parent=Os08t0553100-00
Chr08	irgsp1_rep	three_prime_UTR	27682014	27682169	.	+	.	Parent=Os08t0553100-00
Chr08	irgsp1_rep	mRNA	27681236	27682174	.	-	.	ID=Os08t0553150-00;Name=Os08t0553150-00;Locus_id=Os08g0553150;Note=Hypothetical protein.;Transcript_evidence=AK356938 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0553150-00
Chr08	irgsp1_rep	five_prime_UTR	27682001	27682174	.	-	.	Parent=Os08t0553150-00
Chr08	irgsp1_rep	CDS	27681738	27682000	.	-	0	Parent=Os08t0553150-00
Chr08	irgsp1_rep	CDS	27681236	27681614	.	-	1	Parent=Os08t0553150-00
Chr08	irgsp1_rep	mRNA	27682525	27683919	.	+	.	ID=Os08t0553200-00;Name=Os08t0553200-00;Locus_id=Os08g0553200;Note=Protein of unknown function DUF241%2C plant family protein.;Transcript_evidence=AK335638 (DDBJ);ORF_evidence=NP_001062458.1 (RefSeq);InterPro=Protein of unknown function DUF241%2C plant (IPR004320);TENOR=Os08t0553200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	27682525	27683065	.	+	.	Parent=Os08t0553200-00
Chr08	irgsp1_rep	CDS	27683066	27683773	.	+	0	Parent=Os08t0553200-00
Chr08	irgsp1_rep	three_prime_UTR	27683774	27683919	.	+	.	Parent=Os08t0553200-00
Chr08	irgsp1_rep	mRNA	27683033	27683954	.	-	.	ID=Os08t0553250-00;Name=Os08t0553250-00;Locus_id=Os08g0553250;Note=Hypothetical protein.;Transcript_evidence=AK356938 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0553250-00
Chr08	irgsp1_rep	five_prime_UTR	27683761	27683954	.	-	.	Parent=Os08t0553250-00
Chr08	irgsp1_rep	CDS	27683498	27683760	.	-	0	Parent=Os08t0553250-00
Chr08	irgsp1_rep	CDS	27683033	27683374	.	-	1	Parent=Os08t0553250-00
Chr08	irgsp1_rep	mRNA	27684127	27685646	.	+	.	ID=Os08t0553300-00;Name=Os08t0553300-00;Locus_id=Os08g0553300;Note=Hypothetical conserved gene.;Transcript_evidence=AK335638 (DDBJ);ORF_evidence=Q6Z3G5 (UniProt);InterPro=Protein of unknown function DUF241%2C plant (IPR004320);TENOR=Os08t0553300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	27684127	27684244	.	+	.	Parent=Os08t0553300-00
Chr08	irgsp1_rep	five_prime_UTR	27684339	27684794	.	+	.	Parent=Os08t0553300-00
Chr08	irgsp1_rep	CDS	27684795	27685499	.	+	0	Parent=Os08t0553300-00
Chr08	irgsp1_rep	three_prime_UTR	27685500	27685646	.	+	.	Parent=Os08t0553300-00
Chr08	irgsp1_rep	mRNA	27685838	27687265	.	+	.	ID=Os08t0553400-00;Name=Os08t0553400-00;Locus_id=Os08g0553400;Note=Hypothetical conserved gene.;Transcript_evidence=AK335638 (DDBJ);ORF_evidence=NP_001062459.2 (RefSeq);InterPro=Protein of unknown function DUF241%2C plant (IPR004320);TENOR=Os08t0553400-00;KEGG=Os08t0553400-00
Chr08	irgsp1_rep	five_prime_UTR	27685838	27686417	.	+	.	Parent=Os08t0553400-00
Chr08	irgsp1_rep	CDS	27686418	27687122	.	+	0	Parent=Os08t0553400-00
Chr08	irgsp1_rep	three_prime_UTR	27687123	27687265	.	+	.	Parent=Os08t0553400-00
Chr08	irgsp1_rep	mRNA	27686027	27687772	.	-	.	ID=Os08t0553450-01;Name=Os08t0553450-01;Locus_id=Os08g0553450;Note=Hypothetical gene.;Transcript_evidence=AK288228 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090012J22;TENOR=Os08t0553450-01;KEGG=Os08t0553450-01
Chr08	irgsp1_rep	five_prime_UTR	27687604	27687772	.	-	.	Parent=Os08t0553450-01
Chr08	irgsp1_rep	five_prime_UTR	27686378	27687366	.	-	.	Parent=Os08t0553450-01
Chr08	irgsp1_rep	CDS	27686027	27686377	.	-	0	Parent=Os08t0553450-01
Chr08	irgsp1_rep	mRNA	27690054	27690770	.	+	.	ID=Os08t0553500-00;Name=Os08t0553500-00;Locus_id=Os08g0553500;Note=Protein of unknown function DUF241%2C plant family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001062460.1 (RefSeq);InterPro=Protein of unknown function DUF241%2C plant (IPR004320);TENOR=Os08t0553500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	27690054	27690770	.	+	0	Parent=Os08t0553500-00
Chr08	irgsp1_rep	mRNA	27691880	27692897	.	+	.	ID=Os08t0553700-00;Name=Os08t0553700-00;Locus_id=Os08g0553700;Note=Protein of unknown function DUF241%2C plant family protein.;Transcript_evidence=BT087366 (DDBJ);ORF_evidence=NP_001062461.1 (RefSeq);InterPro=Protein of unknown function DUF241%2C plant (IPR004320);TENOR=Os08t0553700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	27691880	27692030	.	+	.	Parent=Os08t0553700-00
Chr08	irgsp1_rep	CDS	27692031	27692759	.	+	0	Parent=Os08t0553700-00
Chr08	irgsp1_rep	three_prime_UTR	27692760	27692897	.	+	.	Parent=Os08t0553700-00
Chr08	irgsp1_rep	mRNA	27693974	27696402	.	+	.	ID=Os08t0553750-00;Name=Os08t0553750-00;Locus_id=Os08g0553750;Note=Protein of unknown function DUF241%2C plant domain containing protein.;Transcript_evidence=EU972869 (DDBJ);ORF_evidence=Q6Z3G0 (UniProt);InterPro=Protein of unknown function DUF241%2C plant (IPR004320);TENOR=Os08t0553750-00
Chr08	irgsp1_rep	CDS	27693974	27694603	.	+	0	Parent=Os08t0553750-00
Chr08	irgsp1_rep	CDS	27696186	27696293	.	+	0	Parent=Os08t0553750-00
Chr08	irgsp1_rep	three_prime_UTR	27696294	27696402	.	+	.	Parent=Os08t0553750-00
Chr08	irgsp1_rep	mRNA	27697567	27700281	.	-	.	ID=Os08t0553800-01;Name=Os08t0553800-01;Locus_id=Os08g0553800;Oryzabase Gene Name Synonym(s)=NAD(P)-binding domain containing protein;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK105897 (DDBJ%2C Best hit);ORF_evidence=NP_195251.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NmrA-like (IPR008030),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-204-F05;Oryzabase=20476;Expression=AK105897;TENOR=Os08t0553800-01;KEGG=Os08t0553800-01
Chr08	irgsp1_rep	five_prime_UTR	27700216	27700281	.	-	.	Parent=Os08t0553800-01
Chr08	irgsp1_rep	CDS	27700083	27700215	.	-	0	Parent=Os08t0553800-01
Chr08	irgsp1_rep	CDS	27699769	27699995	.	-	2	Parent=Os08t0553800-01
Chr08	irgsp1_rep	CDS	27699582	27699680	.	-	0	Parent=Os08t0553800-01
Chr08	irgsp1_rep	CDS	27699151	27699345	.	-	0	Parent=Os08t0553800-01
Chr08	irgsp1_rep	CDS	27698936	27699028	.	-	0	Parent=Os08t0553800-01
Chr08	irgsp1_rep	CDS	27698735	27698830	.	-	0	Parent=Os08t0553800-01
Chr08	irgsp1_rep	CDS	27697936	27698076	.	-	0	Parent=Os08t0553800-01
Chr08	irgsp1_rep	CDS	27697654	27697830	.	-	0	Parent=Os08t0553800-01
Chr08	irgsp1_rep	three_prime_UTR	27697567	27697653	.	-	.	Parent=Os08t0553800-01
Chr08	irgsp1_rep	mRNA	27697432	27700247	.	-	.	ID=Os08t0553800-02;Name=Os08t0553800-02;Locus_id=Os08g0553800;Oryzabase Gene Name Synonym(s)=NAD(P)-binding domain containing protein;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK073638 (DDBJ%2C Best hit),AK065711 (DDBJ%2C Best hit);ORF_evidence=NP_195251.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NmrA-like (IPR008030),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033046D22,J013039H05;Oryzabase=20476;Expression=AK073638;TENOR=Os08t0553800-02;KEGG=Os08t0553800-02
Chr08	irgsp1_rep	five_prime_UTR	27700216	27700247	.	-	.	Parent=Os08t0553800-02
Chr08	irgsp1_rep	CDS	27700083	27700215	.	-	0	Parent=Os08t0553800-02
Chr08	irgsp1_rep	CDS	27699769	27699995	.	-	2	Parent=Os08t0553800-02
Chr08	irgsp1_rep	CDS	27699582	27699680	.	-	0	Parent=Os08t0553800-02
Chr08	irgsp1_rep	CDS	27699151	27699345	.	-	0	Parent=Os08t0553800-02
Chr08	irgsp1_rep	CDS	27698936	27699028	.	-	0	Parent=Os08t0553800-02
Chr08	irgsp1_rep	CDS	27698735	27698830	.	-	0	Parent=Os08t0553800-02
Chr08	irgsp1_rep	CDS	27697936	27698076	.	-	0	Parent=Os08t0553800-02
Chr08	irgsp1_rep	CDS	27697654	27697830	.	-	0	Parent=Os08t0553800-02
Chr08	irgsp1_rep	three_prime_UTR	27697432	27697653	.	-	.	Parent=Os08t0553800-02
Chr08	irgsp1_rep	mRNA	27695184	27700247	.	-	.	ID=Os08t0553800-03;Name=Os08t0553800-03;Locus_id=Os08g0553800;Oryzabase Gene Name Synonym(s)=NAD(P)-binding domain containing protein;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK066697 (DDBJ%2C Best hit);ORF_evidence=NP_195251.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NmrA-like (IPR008030),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013073F17;Oryzabase=20476;Expression=AK066697;TENOR=Os08t0553800-03;KEGG=Os08t0553800-03
Chr08	irgsp1_rep	five_prime_UTR	27700216	27700247	.	-	.	Parent=Os08t0553800-03
Chr08	irgsp1_rep	CDS	27700083	27700215	.	-	0	Parent=Os08t0553800-03
Chr08	irgsp1_rep	CDS	27699769	27699995	.	-	2	Parent=Os08t0553800-03
Chr08	irgsp1_rep	CDS	27699582	27699680	.	-	0	Parent=Os08t0553800-03
Chr08	irgsp1_rep	CDS	27699151	27699345	.	-	0	Parent=Os08t0553800-03
Chr08	irgsp1_rep	CDS	27698936	27699028	.	-	0	Parent=Os08t0553800-03
Chr08	irgsp1_rep	CDS	27698735	27698830	.	-	0	Parent=Os08t0553800-03
Chr08	irgsp1_rep	CDS	27697936	27698076	.	-	0	Parent=Os08t0553800-03
Chr08	irgsp1_rep	CDS	27697654	27697830	.	-	0	Parent=Os08t0553800-03
Chr08	irgsp1_rep	three_prime_UTR	27696011	27697653	.	-	.	Parent=Os08t0553800-03
Chr08	irgsp1_rep	three_prime_UTR	27695184	27695842	.	-	.	Parent=Os08t0553800-03
Chr08	irgsp1_rep	mRNA	27697387	27700219	.	-	.	ID=Os08t0553800-05;Name=Os08t0553800-05;Locus_id=Os08g0553800;Oryzabase Gene Name Synonym(s)=NAD(P)-binding domain containing protein;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK104428 (DDBJ%2C Best hit);ORF_evidence=NP_195251.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NmrA-like (IPR008030),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=006-206-B01;Oryzabase=20476;Expression=AK104428;TENOR=Os08t0553800-05;KEGG=Os08t0553800-05
Chr08	irgsp1_rep	five_prime_UTR	27700216	27700219	.	-	.	Parent=Os08t0553800-05
Chr08	irgsp1_rep	CDS	27700083	27700215	.	-	0	Parent=Os08t0553800-05
Chr08	irgsp1_rep	CDS	27699769	27699995	.	-	2	Parent=Os08t0553800-05
Chr08	irgsp1_rep	CDS	27699582	27699680	.	-	0	Parent=Os08t0553800-05
Chr08	irgsp1_rep	CDS	27699151	27699345	.	-	0	Parent=Os08t0553800-05
Chr08	irgsp1_rep	CDS	27698936	27699028	.	-	0	Parent=Os08t0553800-05
Chr08	irgsp1_rep	CDS	27698735	27698830	.	-	0	Parent=Os08t0553800-05
Chr08	irgsp1_rep	CDS	27697936	27698076	.	-	0	Parent=Os08t0553800-05
Chr08	irgsp1_rep	CDS	27697654	27697830	.	-	0	Parent=Os08t0553800-05
Chr08	irgsp1_rep	three_prime_UTR	27697387	27697653	.	-	.	Parent=Os08t0553800-05
Chr08	irgsp1_rep	mRNA	27703403	27707229	.	+	.	ID=Os08t0554000-01;Name=Os08t0554000-01;Locus_id=Os08g0554000;Note=WD-40 repeat containing protein.;Transcript_evidence=AK111661 (DDBJ%2C Best hit);ORF_evidence=NP_001150177.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J013153B06;Expression=AK111661;TENOR=Os08t0554000-01;KEGG=Os08t0554000-01
Chr08	irgsp1_rep	five_prime_UTR	27703403	27703483	.	+	.	Parent=Os08t0554000-01
Chr08	irgsp1_rep	CDS	27703484	27703528	.	+	0	Parent=Os08t0554000-01
Chr08	irgsp1_rep	CDS	27703603	27703689	.	+	0	Parent=Os08t0554000-01
Chr08	irgsp1_rep	CDS	27703841	27703973	.	+	0	Parent=Os08t0554000-01
Chr08	irgsp1_rep	CDS	27704082	27704193	.	+	2	Parent=Os08t0554000-01
Chr08	irgsp1_rep	CDS	27704772	27704871	.	+	1	Parent=Os08t0554000-01
Chr08	irgsp1_rep	CDS	27705052	27705179	.	+	0	Parent=Os08t0554000-01
Chr08	irgsp1_rep	CDS	27705288	27705357	.	+	1	Parent=Os08t0554000-01
Chr08	irgsp1_rep	CDS	27705790	27705878	.	+	0	Parent=Os08t0554000-01
Chr08	irgsp1_rep	CDS	27705961	27706006	.	+	1	Parent=Os08t0554000-01
Chr08	irgsp1_rep	CDS	27706096	27706166	.	+	0	Parent=Os08t0554000-01
Chr08	irgsp1_rep	CDS	27706244	27706317	.	+	1	Parent=Os08t0554000-01
Chr08	irgsp1_rep	CDS	27706402	27706460	.	+	2	Parent=Os08t0554000-01
Chr08	irgsp1_rep	CDS	27706583	27706624	.	+	0	Parent=Os08t0554000-01
Chr08	irgsp1_rep	three_prime_UTR	27706625	27707229	.	+	.	Parent=Os08t0554000-01
Chr08	irgsp1_rep	mRNA	27703403	27707202	.	+	.	ID=Os08t0554000-02;Name=Os08t0554000-02;Locus_id=Os08g0554000;Note=Similar to protein TSSC1.;Transcript_evidence=AK112044 (DDBJ%2C Best hit);ORF_evidence=NP_001150177.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=001-047-C03;Expression=AK112044;TENOR=Os08t0554000-02;KEGG=Os08t0554000-02
Chr08	irgsp1_rep	five_prime_UTR	27703403	27703483	.	+	.	Parent=Os08t0554000-02
Chr08	irgsp1_rep	CDS	27703484	27703528	.	+	0	Parent=Os08t0554000-02
Chr08	irgsp1_rep	CDS	27703603	27703689	.	+	0	Parent=Os08t0554000-02
Chr08	irgsp1_rep	CDS	27703841	27703973	.	+	0	Parent=Os08t0554000-02
Chr08	irgsp1_rep	CDS	27704082	27704193	.	+	2	Parent=Os08t0554000-02
Chr08	irgsp1_rep	CDS	27704772	27704871	.	+	1	Parent=Os08t0554000-02
Chr08	irgsp1_rep	CDS	27705052	27705179	.	+	0	Parent=Os08t0554000-02
Chr08	irgsp1_rep	CDS	27705288	27705357	.	+	1	Parent=Os08t0554000-02
Chr08	irgsp1_rep	CDS	27705790	27705878	.	+	0	Parent=Os08t0554000-02
Chr08	irgsp1_rep	CDS	27705961	27706006	.	+	1	Parent=Os08t0554000-02
Chr08	irgsp1_rep	CDS	27706096	27706166	.	+	0	Parent=Os08t0554000-02
Chr08	irgsp1_rep	CDS	27706244	27706317	.	+	1	Parent=Os08t0554000-02
Chr08	irgsp1_rep	CDS	27706616	27706675	.	+	2	Parent=Os08t0554000-02
Chr08	irgsp1_rep	CDS	27706781	27706881	.	+	2	Parent=Os08t0554000-02
Chr08	irgsp1_rep	three_prime_UTR	27706882	27707202	.	+	.	Parent=Os08t0554000-02
Chr08	irgsp1_rep	mRNA	27708166	27712609	.	+	.	ID=Os08t0554050-01;Name=Os08t0554050-01;Locus_id=Os08g0554050;Note=Similar to auxin-independent growth promoter.;Transcript_evidence=AK241099 (DDBJ%2C Best hit);ORF_evidence=NP_001148095.1 (RefSeq);InterPro=GDP-fucose protein O-fucosyltransferase (IPR019378);NIAS_FLcDNA=J065077L20;TENOR=Os08t0554050-01;KEGG=Os08t0554050-01
Chr08	irgsp1_rep	five_prime_UTR	27708166	27708296	.	+	.	Parent=Os08t0554050-01
Chr08	irgsp1_rep	CDS	27708297	27708482	.	+	0	Parent=Os08t0554050-01
Chr08	irgsp1_rep	CDS	27708568	27708636	.	+	0	Parent=Os08t0554050-01
Chr08	irgsp1_rep	CDS	27709140	27709218	.	+	0	Parent=Os08t0554050-01
Chr08	irgsp1_rep	CDS	27709389	27709465	.	+	2	Parent=Os08t0554050-01
Chr08	irgsp1_rep	CDS	27709687	27709775	.	+	0	Parent=Os08t0554050-01
Chr08	irgsp1_rep	CDS	27709872	27710055	.	+	1	Parent=Os08t0554050-01
Chr08	irgsp1_rep	CDS	27710310	27710491	.	+	0	Parent=Os08t0554050-01
Chr08	irgsp1_rep	CDS	27711204	27711306	.	+	1	Parent=Os08t0554050-01
Chr08	irgsp1_rep	CDS	27711401	27711732	.	+	0	Parent=Os08t0554050-01
Chr08	irgsp1_rep	CDS	27711819	27712311	.	+	1	Parent=Os08t0554050-01
Chr08	irgsp1_rep	three_prime_UTR	27712312	27712609	.	+	.	Parent=Os08t0554050-01
Chr08	irgsp1_rep	mRNA	27709686	27712155	.	-	.	ID=Os08t0554075-00;Name=Os08t0554075-00;Locus_id=Os08g0554075;Note=Hypothetical protein.;Transcript_evidence=tplb0058a02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0554075-00
Chr08	irgsp1_rep	five_prime_UTR	27711835	27712155	.	-	.	Parent=Os08t0554075-00
Chr08	irgsp1_rep	CDS	27711807	27711834	.	-	0	Parent=Os08t0554075-00
Chr08	irgsp1_rep	CDS	27711505	27711722	.	-	2	Parent=Os08t0554075-00
Chr08	irgsp1_rep	three_prime_UTR	27711386	27711504	.	-	.	Parent=Os08t0554075-00
Chr08	irgsp1_rep	three_prime_UTR	27711212	27711299	.	-	.	Parent=Os08t0554075-00
Chr08	irgsp1_rep	three_prime_UTR	27710295	27710501	.	-	.	Parent=Os08t0554075-00
Chr08	irgsp1_rep	three_prime_UTR	27709900	27710043	.	-	.	Parent=Os08t0554075-00
Chr08	irgsp1_rep	three_prime_UTR	27709686	27709795	.	-	.	Parent=Os08t0554075-00
Chr08	irgsp1_rep	mRNA	27714041	27718673	.	+	.	ID=Os08t0554100-01;Name=Os08t0554100-01;Locus_id=Os08g0554100;Note=Similar to MYST1 protein (Fragment).;Transcript_evidence=AK120710 (DDBJ%2C Best hit);ORF_evidence=NP_172460.6 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Galactose-binding domain-like (IPR008979),Rhamnogalacturonate lyase (IPR010325),Glycoside hydrolase-type carbohydrate-binding (IPR011013),Carbohydrate-binding-like fold (IPR013784);NIAS_FLcDNA=J023001K13;Expression=AK120710;TENOR=Os08t0554100-01;KEGG=Os08t0554100-01
Chr08	irgsp1_rep	five_prime_UTR	27714041	27714140	.	+	.	Parent=Os08t0554100-01
Chr08	irgsp1_rep	five_prime_UTR	27714230	27714491	.	+	.	Parent=Os08t0554100-01
Chr08	irgsp1_rep	CDS	27714492	27714505	.	+	0	Parent=Os08t0554100-01
Chr08	irgsp1_rep	CDS	27714694	27714790	.	+	1	Parent=Os08t0554100-01
Chr08	irgsp1_rep	CDS	27714908	27715029	.	+	0	Parent=Os08t0554100-01
Chr08	irgsp1_rep	CDS	27715267	27715320	.	+	1	Parent=Os08t0554100-01
Chr08	irgsp1_rep	CDS	27715427	27715546	.	+	1	Parent=Os08t0554100-01
Chr08	irgsp1_rep	CDS	27715672	27715791	.	+	1	Parent=Os08t0554100-01
Chr08	irgsp1_rep	CDS	27715900	27716041	.	+	1	Parent=Os08t0554100-01
Chr08	irgsp1_rep	CDS	27716131	27716301	.	+	0	Parent=Os08t0554100-01
Chr08	irgsp1_rep	CDS	27716397	27716552	.	+	0	Parent=Os08t0554100-01
Chr08	irgsp1_rep	CDS	27716716	27716822	.	+	0	Parent=Os08t0554100-01
Chr08	irgsp1_rep	CDS	27716950	27717040	.	+	1	Parent=Os08t0554100-01
Chr08	irgsp1_rep	CDS	27717173	27717314	.	+	0	Parent=Os08t0554100-01
Chr08	irgsp1_rep	CDS	27717391	27717547	.	+	2	Parent=Os08t0554100-01
Chr08	irgsp1_rep	CDS	27717642	27717758	.	+	1	Parent=Os08t0554100-01
Chr08	irgsp1_rep	CDS	27717838	27717964	.	+	1	Parent=Os08t0554100-01
Chr08	irgsp1_rep	CDS	27718086	27718325	.	+	0	Parent=Os08t0554100-01
Chr08	irgsp1_rep	three_prime_UTR	27718326	27718673	.	+	.	Parent=Os08t0554100-01
Chr08	irgsp1_rep	mRNA	27714999	27718615	.	+	.	ID=Os08t0554100-02;Name=Os08t0554100-02;Locus_id=Os08g0554100;Note=Similar to predicted protein.;Transcript_evidence=AK121429 (DDBJ%2C Best hit);ORF_evidence=NP_172460.6 (RefSeq);GO=Molecular Function: carbohydrate binding (GO:0030246);InterPro=Galactose-binding domain-like (IPR008979),Rhamnogalacturonate lyase (IPR010325),Carbohydrate-binding-like fold (IPR013784);NIAS_FLcDNA=J023136J01;Expression=AK121429;TENOR=Os08t0554100-02;KEGG=Os08t0554100-02
Chr08	irgsp1_rep	five_prime_UTR	27714999	27715000	.	+	.	Parent=Os08t0554100-02
Chr08	irgsp1_rep	CDS	27715001	27715029	.	+	0	Parent=Os08t0554100-02
Chr08	irgsp1_rep	CDS	27715267	27715320	.	+	1	Parent=Os08t0554100-02
Chr08	irgsp1_rep	CDS	27715427	27715546	.	+	1	Parent=Os08t0554100-02
Chr08	irgsp1_rep	CDS	27715672	27715791	.	+	1	Parent=Os08t0554100-02
Chr08	irgsp1_rep	CDS	27715900	27716041	.	+	1	Parent=Os08t0554100-02
Chr08	irgsp1_rep	CDS	27716131	27716301	.	+	0	Parent=Os08t0554100-02
Chr08	irgsp1_rep	CDS	27716397	27716552	.	+	0	Parent=Os08t0554100-02
Chr08	irgsp1_rep	CDS	27716716	27716822	.	+	0	Parent=Os08t0554100-02
Chr08	irgsp1_rep	CDS	27716950	27717040	.	+	1	Parent=Os08t0554100-02
Chr08	irgsp1_rep	CDS	27717173	27717314	.	+	0	Parent=Os08t0554100-02
Chr08	irgsp1_rep	CDS	27717391	27717547	.	+	2	Parent=Os08t0554100-02
Chr08	irgsp1_rep	CDS	27717642	27717758	.	+	1	Parent=Os08t0554100-02
Chr08	irgsp1_rep	CDS	27717838	27717964	.	+	1	Parent=Os08t0554100-02
Chr08	irgsp1_rep	CDS	27718086	27718325	.	+	0	Parent=Os08t0554100-02
Chr08	irgsp1_rep	three_prime_UTR	27718326	27718615	.	+	.	Parent=Os08t0554100-02
Chr08	irgsp1_rep	mRNA	27728846	27731269	.	+	.	ID=Os08t0554300-00;Name=Os08t0554300-00;Locus_id=Os08g0554300;Note=Similar to predicted protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_172460.6 (RefSeq);GO=Molecular Function: carbohydrate binding (GO:0030246);InterPro=Galactose-binding domain-like (IPR008979),Rhamnogalacturonate lyase (IPR010325),Carbohydrate-binding-like fold (IPR013784);TENOR=Os08t0554300-00;KEGG=Os08t0554300-00
Chr08	irgsp1_rep	CDS	27728846	27728977	.	+	0	Parent=Os08t0554300-00
Chr08	irgsp1_rep	CDS	27729118	27729288	.	+	0	Parent=Os08t0554300-00
Chr08	irgsp1_rep	CDS	27729384	27729539	.	+	0	Parent=Os08t0554300-00
Chr08	irgsp1_rep	CDS	27729700	27729806	.	+	0	Parent=Os08t0554300-00
Chr08	irgsp1_rep	CDS	27729930	27730020	.	+	1	Parent=Os08t0554300-00
Chr08	irgsp1_rep	CDS	27730118	27730259	.	+	0	Parent=Os08t0554300-00
Chr08	irgsp1_rep	CDS	27730336	27730492	.	+	2	Parent=Os08t0554300-00
Chr08	irgsp1_rep	CDS	27730587	27730703	.	+	1	Parent=Os08t0554300-00
Chr08	irgsp1_rep	CDS	27730783	27730909	.	+	1	Parent=Os08t0554300-00
Chr08	irgsp1_rep	CDS	27731030	27731269	.	+	0	Parent=Os08t0554300-00
Chr08	irgsp1_rep	mRNA	27733385	27739638	.	-	.	ID=Os08t0554400-01;Name=Os08t0554400-01;Locus_id=Os08g0554400;CGSNL Gene Symbol=IDD6;CGSNL Gene Name=INDETERMINATE DOMAIN 6;Oryzabase Gene Symbol Synonym(s)=OsIDD6;Oryzabase Gene Name Synonym(s)=indeterminate domain 6;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK072128 (DDBJ%2C Best hit);ORF_evidence=Q5UDB7 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880),Zinc finger%2C double-stranded RNA binding (IPR022755);NIAS_FLcDNA=J013124C13;Oryzabase=13154;Expression=AK072128;TENOR=Os08t0554400-01;KEGG=Os08t0554400-01
Chr08	irgsp1_rep	five_prime_UTR	27739380	27739638	.	-	.	Parent=Os08t0554400-01
Chr08	irgsp1_rep	five_prime_UTR	27738592	27738788	.	-	.	Parent=Os08t0554400-01
Chr08	irgsp1_rep	CDS	27738441	27738591	.	-	0	Parent=Os08t0554400-01
Chr08	irgsp1_rep	CDS	27737960	27738356	.	-	2	Parent=Os08t0554400-01
Chr08	irgsp1_rep	CDS	27733564	27734662	.	-	1	Parent=Os08t0554400-01
Chr08	irgsp1_rep	three_prime_UTR	27733385	27733563	.	-	.	Parent=Os08t0554400-01
Chr08	irgsp1_rep	mRNA	27733390	27739327	.	-	.	ID=Os08t0554400-02;Name=Os08t0554400-02;Locus_id=Os08g0554400;CGSNL Gene Symbol=IDD6;CGSNL Gene Name=INDETERMINATE DOMAIN 6;Oryzabase Gene Symbol Synonym(s)=OsIDD6;Oryzabase Gene Name Synonym(s)=indeterminate domain 6;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK099830 (DDBJ%2C Best hit);ORF_evidence=B6UFE2 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880),Zinc finger%2C double-stranded RNA binding (IPR022755);NIAS_FLcDNA=J013105K20;Oryzabase=13154;Expression=AK099830;TENOR=Os08t0554400-02;KEGG=Os08t0554400-02
Chr08	irgsp1_rep	five_prime_UTR	27738887	27739327	.	-	.	Parent=Os08t0554400-02
Chr08	irgsp1_rep	five_prime_UTR	27738592	27738788	.	-	.	Parent=Os08t0554400-02
Chr08	irgsp1_rep	CDS	27738441	27738591	.	-	0	Parent=Os08t0554400-02
Chr08	irgsp1_rep	CDS	27737960	27738356	.	-	2	Parent=Os08t0554400-02
Chr08	irgsp1_rep	CDS	27733564	27734662	.	-	1	Parent=Os08t0554400-02
Chr08	irgsp1_rep	three_prime_UTR	27733390	27733563	.	-	.	Parent=Os08t0554400-02
Chr08	irgsp1_rep	mRNA	27738064	27738378	.	+	.	ID=Os08t0554501-00;Name=Os08t0554501-00;Locus_id=Os08g0554501;Note=Hypothetical protein.;Transcript_evidence=BT086922 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0554501-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	27738064	27738378	.	+	0	Parent=Os08t0554501-00
Chr08	irgsp1_rep	mRNA	27756270	27756946	.	+	.	ID=Os08t0554699-00;Name=Os08t0554699-00;Locus_id=Os08g0554699;Oryzabase Gene Symbol Synonym(s)=OsGRL18;Oryzabase Gene Name Synonym(s)=GRX-like protein 18%2C glutaredoxin-like protein 18;Note=Similar to electron transporter.;Transcript_evidence=AK335896 (DDBJ);ORF_evidence=NP_001147229.1 (RefSeq);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin (IPR002109),Thioredoxin-like fold (IPR012336);Oryzabase=13608;TENOR=Os08t0554699-00
Chr08	irgsp1_rep	CDS	27756270	27756824	.	+	0	Parent=Os08t0554699-00
Chr08	irgsp1_rep	three_prime_UTR	27756825	27756946	.	+	.	Parent=Os08t0554699-00
Chr08	irgsp1_rep	mRNA	27761936	27765767	.	+	.	ID=Os08t0554900-01;Name=Os08t0554900-01;Locus_id=Os08g0554900;Note=Nonaspanin (TM9SF) family protein.;Transcript_evidence=AK099230 (DDBJ%2C Best hit),AK072840 (DDBJ%2C Best hit);ORF_evidence=B7FAI5 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Nonaspanin (TM9SF) (IPR004240);NIAS_FLcDNA=J013094O15,J023141D24;Expression=AK099230;TENOR=Os08t0554900-01;KEGG=Os08t0554900-01
Chr08	irgsp1_rep	five_prime_UTR	27761936	27761995	.	+	.	Parent=Os08t0554900-01
Chr08	irgsp1_rep	CDS	27761996	27762130	.	+	0	Parent=Os08t0554900-01
Chr08	irgsp1_rep	CDS	27763270	27763434	.	+	0	Parent=Os08t0554900-01
Chr08	irgsp1_rep	CDS	27763526	27763635	.	+	0	Parent=Os08t0554900-01
Chr08	irgsp1_rep	CDS	27763720	27763825	.	+	1	Parent=Os08t0554900-01
Chr08	irgsp1_rep	CDS	27763902	27764014	.	+	0	Parent=Os08t0554900-01
Chr08	irgsp1_rep	CDS	27764121	27764274	.	+	1	Parent=Os08t0554900-01
Chr08	irgsp1_rep	CDS	27764400	27765557	.	+	0	Parent=Os08t0554900-01
Chr08	irgsp1_rep	three_prime_UTR	27765558	27765767	.	+	.	Parent=Os08t0554900-01
Chr08	irgsp1_rep	mRNA	27764691	27765798	.	+	.	ID=Os08t0554900-02;Name=Os08t0554900-02;Locus_id=Os08g0554900;Note=Similar to cDNA%2C clone: J100074O19%2C full insert sequence.;Transcript_evidence=AK105089 (DDBJ%2C Best hit);ORF_evidence=B7FAI5 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Nonaspanin (TM9SF) (IPR004240);NIAS_FLcDNA=001-047-B06;Expression=AK105089;TENOR=Os08t0554900-02;KEGG=Os08t0554900-02
Chr08	irgsp1_rep	CDS	27764691	27765557	.	+	0	Parent=Os08t0554900-02
Chr08	irgsp1_rep	three_prime_UTR	27765558	27765798	.	+	.	Parent=Os08t0554900-02
Chr08	irgsp1_rep	mRNA	27773652	27774795	.	+	.	ID=Os08t0555000-01;Name=Os08t0555000-01;Locus_id=Os08g0555000;Note=Transmembrane 9 superfamily protein member 2 precursor (p76).;Transcript_evidence=AK058785 (DDBJ%2C Best hit);ORF_evidence=B7FAI5 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Nonaspanin (TM9SF) (IPR004240);NIAS_FLcDNA=001-002-D10;TENOR=Os08t0555000-01;KEGG=Os08t0555000-01
Chr08	irgsp1_rep	CDS	27773652	27774491	.	+	0	Parent=Os08t0555000-01
Chr08	irgsp1_rep	three_prime_UTR	27774492	27774795	.	+	.	Parent=Os08t0555000-01
Chr08	irgsp1_rep	mRNA	27790207	27794126	.	+	.	ID=Os08t0555200-01;Name=Os08t0555200-01;Locus_id=Os08g0555200;Note=Nonaspanin (TM9SF) family protein.;Transcript_evidence=AK243506 (DDBJ%2C Best hit);ORF_evidence=NP_001151787.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Nonaspanin (TM9SF) (IPR004240);NIAS_FLcDNA=J100074O19;TENOR=Os08t0555200-01;KEGG=Os08t0555200-01
Chr08	irgsp1_rep	five_prime_UTR	27790207	27790289	.	+	.	Parent=Os08t0555200-01
Chr08	irgsp1_rep	CDS	27790290	27790424	.	+	0	Parent=Os08t0555200-01
Chr08	irgsp1_rep	CDS	27791563	27791727	.	+	0	Parent=Os08t0555200-01
Chr08	irgsp1_rep	CDS	27791819	27791928	.	+	0	Parent=Os08t0555200-01
Chr08	irgsp1_rep	CDS	27792013	27792118	.	+	1	Parent=Os08t0555200-01
Chr08	irgsp1_rep	CDS	27792194	27792306	.	+	0	Parent=Os08t0555200-01
Chr08	irgsp1_rep	CDS	27792413	27792566	.	+	1	Parent=Os08t0555200-01
Chr08	irgsp1_rep	CDS	27792692	27793849	.	+	0	Parent=Os08t0555200-01
Chr08	irgsp1_rep	three_prime_UTR	27793850	27794126	.	+	.	Parent=Os08t0555200-01
Chr08	irgsp1_rep	mRNA	27794265	27797275	.	+	.	ID=Os08t0555300-01;Name=Os08t0555300-01;Locus_id=Os08g0555300;Note=Nonaspanin (TM9SF) domain containing protein.;Transcript_evidence=AK241696 (DDBJ%2C Best hit);ORF_evidence=Q6Z0S2 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Nonaspanin (TM9SF) (IPR004240);NIAS_FLcDNA=J065195P08;TENOR=Os08t0555300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	27794265	27794438	.	+	.	Parent=Os08t0555300-01
Chr08	irgsp1_rep	CDS	27794439	27794573	.	+	0	Parent=Os08t0555300-01
Chr08	irgsp1_rep	CDS	27794690	27794854	.	+	0	Parent=Os08t0555300-01
Chr08	irgsp1_rep	CDS	27794983	27795092	.	+	0	Parent=Os08t0555300-01
Chr08	irgsp1_rep	CDS	27795173	27795314	.	+	1	Parent=Os08t0555300-01
Chr08	irgsp1_rep	three_prime_UTR	27795315	27795514	.	+	.	Parent=Os08t0555300-01
Chr08	irgsp1_rep	three_prime_UTR	27795602	27795755	.	+	.	Parent=Os08t0555300-01
Chr08	irgsp1_rep	three_prime_UTR	27795885	27797275	.	+	.	Parent=Os08t0555300-01
Chr08	irgsp1_rep	mRNA	27797717	27799313	.	-	.	ID=Os08t0555400-00;Name=Os08t0555400-00;Locus_id=Os08g0555400;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6Z0S1 (UniProt);TENOR=Os08t0555400-00
Chr08	irgsp1_rep	CDS	27799094	27799313	.	-	0	Parent=Os08t0555400-00
Chr08	irgsp1_rep	CDS	27798670	27798890	.	-	2	Parent=Os08t0555400-00
Chr08	irgsp1_rep	CDS	27797717	27798352	.	-	0	Parent=Os08t0555400-00
Chr08	irgsp1_rep	mRNA	27807895	27810686	.	-	.	ID=Os08t0555600-01;Name=Os08t0555600-01;Locus_id=Os08g0555600;Note=Hypothetical conserved gene.;Transcript_evidence=AK108204 (DDBJ%2C Best hit);ORF_evidence=B9FYH8 (UniProt);NIAS_FLcDNA=002-140-D03;Expression=AK108204;TENOR=Os08t0555600-01;KEGG=Os08t0555600-01
Chr08	irgsp1_rep	five_prime_UTR	27810630	27810686	.	-	.	Parent=Os08t0555600-01
Chr08	irgsp1_rep	CDS	27810414	27810629	.	-	0	Parent=Os08t0555600-01
Chr08	irgsp1_rep	three_prime_UTR	27810291	27810413	.	-	.	Parent=Os08t0555600-01
Chr08	irgsp1_rep	three_prime_UTR	27807895	27808209	.	-	.	Parent=Os08t0555600-01
Chr08	irgsp1_rep	mRNA	27818497	27818907	.	+	.	ID=Os08t0555650-00;Name=Os08t0555650-00;Locus_id=Os08g0555650;Note=Hypothetical protein.;Transcript_evidence=EU948609 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0555650-00
Chr08	irgsp1_rep	five_prime_UTR	27818497	27818638	.	+	.	Parent=Os08t0555650-00
Chr08	irgsp1_rep	CDS	27818639	27818905	.	+	0	Parent=Os08t0555650-00
Chr08	irgsp1_rep	three_prime_UTR	27818906	27818907	.	+	.	Parent=Os08t0555650-00
Chr08	irgsp1_rep	mRNA	27818486	27818962	.	-	.	ID=Os08t0555700-00;Name=Os08t0555700-00;Locus_id=Os08g0555700;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001175697.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880);TENOR=Os08t0555700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	27818486	27818962	.	-	0	Parent=Os08t0555700-00
Chr08	irgsp1_rep	mRNA	27811004	27814418	.	+	.	ID=Os08t0555800-00;Name=Os08t0555800-00;Locus_id=Os08g0555800;CGSNL Gene Symbol=PRD2;Oryzabase Gene Symbol Synonym(s)=OsPRD2%2C OsPRD2/MPS1%2C OsMPS1;Oryzabase Gene Name Synonym(s)=MULTIPOLAR SPINDLE 1;Note=Conserved hypothetical protein.;Transcript_evidence=AK366839 (DDBJ);ORF_evidence=B9FYH9 (UniProt);Oryzabase=23395;TENOR=Os08t0555800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	27811004	27811016	.	+	.	Parent=Os08t0555800-00
Chr08	irgsp1_rep	CDS	27811017	27811214	.	+	0	Parent=Os08t0555800-00
Chr08	irgsp1_rep	CDS	27811292	27811349	.	+	0	Parent=Os08t0555800-00
Chr08	irgsp1_rep	CDS	27811419	27811568	.	+	2	Parent=Os08t0555800-00
Chr08	irgsp1_rep	CDS	27811796	27811855	.	+	2	Parent=Os08t0555800-00
Chr08	irgsp1_rep	CDS	27811966	27812048	.	+	2	Parent=Os08t0555800-00
Chr08	irgsp1_rep	CDS	27812131	27812188	.	+	0	Parent=Os08t0555800-00
Chr08	irgsp1_rep	CDS	27812640	27812753	.	+	2	Parent=Os08t0555800-00
Chr08	irgsp1_rep	CDS	27813110	27813299	.	+	2	Parent=Os08t0555800-00
Chr08	irgsp1_rep	CDS	27813718	27813788	.	+	1	Parent=Os08t0555800-00
Chr08	irgsp1_rep	CDS	27814173	27814357	.	+	2	Parent=Os08t0555800-00
Chr08	irgsp1_rep	three_prime_UTR	27814358	27814418	.	+	.	Parent=Os08t0555800-00
Chr08	irgsp1_rep	mRNA	27825035	27830293	.	-	.	ID=Os08t0556000-01;Name=Os08t0556000-01;Locus_id=Os08g0556000;Note=Similar to YTH domain protein 2 (High-glucose-regulated protein 8) (NY-REN-2 antigen) (CLL-associated antigen KW-14).;Transcript_evidence=AK068463 (DDBJ%2C Best hit);ORF_evidence=A3BVN4 (UniProt);InterPro=YTH domain (IPR007275);NIAS_FLcDNA=J013153A10;Expression=AK068463;TENOR=Os08t0556000-01;KEGG=Os08t0556000-01
Chr08	irgsp1_rep	five_prime_UTR	27830000	27830293	.	-	.	Parent=Os08t0556000-01
Chr08	irgsp1_rep	CDS	27829966	27829999	.	-	0	Parent=Os08t0556000-01
Chr08	irgsp1_rep	CDS	27828570	27828643	.	-	2	Parent=Os08t0556000-01
Chr08	irgsp1_rep	CDS	27828269	27828446	.	-	0	Parent=Os08t0556000-01
Chr08	irgsp1_rep	CDS	27828082	27828164	.	-	2	Parent=Os08t0556000-01
Chr08	irgsp1_rep	CDS	27827699	27828005	.	-	0	Parent=Os08t0556000-01
Chr08	irgsp1_rep	CDS	27827481	27827599	.	-	2	Parent=Os08t0556000-01
Chr08	irgsp1_rep	CDS	27826321	27826839	.	-	0	Parent=Os08t0556000-01
Chr08	irgsp1_rep	CDS	27825985	27826197	.	-	0	Parent=Os08t0556000-01
Chr08	irgsp1_rep	CDS	27825513	27825860	.	-	0	Parent=Os08t0556000-01
Chr08	irgsp1_rep	three_prime_UTR	27825035	27825512	.	-	.	Parent=Os08t0556000-01
Chr08	irgsp1_rep	mRNA	27825033	27826624	.	-	.	ID=Os08t0556000-02;Name=Os08t0556000-02;Locus_id=Os08g0556000;Note=Similar to predicted protein.;Transcript_evidence=AK104837 (DDBJ%2C Best hit);ORF_evidence=Q25AJ0 (UniProt);InterPro=YTH domain (IPR007275);NIAS_FLcDNA=001-042-D12;Expression=AK104837;TENOR=Os08t0556000-02;KEGG=Os08t0556000-02
Chr08	irgsp1_rep	five_prime_UTR	27826624	27826624	.	-	.	Parent=Os08t0556000-02
Chr08	irgsp1_rep	CDS	27826321	27826623	.	-	0	Parent=Os08t0556000-02
Chr08	irgsp1_rep	CDS	27825985	27826197	.	-	0	Parent=Os08t0556000-02
Chr08	irgsp1_rep	CDS	27825513	27825860	.	-	0	Parent=Os08t0556000-02
Chr08	irgsp1_rep	three_prime_UTR	27825033	27825512	.	-	.	Parent=Os08t0556000-02
Chr08	irgsp1_rep	mRNA	27825716	27826467	.	+	.	ID=Os08t0556050-00;Name=Os08t0556050-00;Locus_id=Os08g0556050;Note=Hypothetical protein.;Transcript_evidence=BT016473 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0556050-00
Chr08	irgsp1_rep	five_prime_UTR	27825716	27825719	.	+	.	Parent=Os08t0556050-00
Chr08	irgsp1_rep	CDS	27825720	27825854	.	+	0	Parent=Os08t0556050-00
Chr08	irgsp1_rep	CDS	27825979	27826217	.	+	0	Parent=Os08t0556050-00
Chr08	irgsp1_rep	CDS	27826333	27826375	.	+	1	Parent=Os08t0556050-00
Chr08	irgsp1_rep	three_prime_UTR	27826376	27826467	.	+	.	Parent=Os08t0556050-00
Chr08	irgsp1_rep	mRNA	27831294	27831366	.	+	.	ID=Os08t0556101-00;Name=Os08t0556101-00;Locus_id=Os08g0556101;Note=Non-protein coding transcript.;Transcript_evidence=X06283 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0556101-00
Chr08	irgsp1_rep	exon	27831294	27831366	.	+	.	Parent=Os08t0556101-00
Chr08	irgsp1_rep	mRNA	27833082	27834132	.	+	.	ID=Os08t0556200-01;Name=Os08t0556200-01;Locus_id=Os08g0556200;Note=Similar to Dihydroneopterin aldolase.;Transcript_evidence=AK121222 (DDBJ%2C Best hit);ORF_evidence=NP_001147240.1 (RefSeq);GO=Biological Process: folic acid-containing compound metabolic process (GO:0006760),Molecular Function: dihydroneopterin aldolase activity (GO:0004150);InterPro=Dihydroneopterin aldolase (IPR006156),Dihydroneopterin aldolase/epimerase domain (IPR006157);NIAS_FLcDNA=J023090H22;Expression=AK121222;TENOR=Os08t0556200-01;KEGG=Os08t0556200-01
Chr08	irgsp1_rep	five_prime_UTR	27833082	27833089	.	+	.	Parent=Os08t0556200-01
Chr08	irgsp1_rep	CDS	27833090	27833304	.	+	0	Parent=Os08t0556200-01
Chr08	irgsp1_rep	CDS	27833734	27833926	.	+	1	Parent=Os08t0556200-01
Chr08	irgsp1_rep	three_prime_UTR	27833927	27834132	.	+	.	Parent=Os08t0556200-01
Chr08	irgsp1_rep	mRNA	27834584	27838060	.	-	.	ID=Os08t0556300-01;Name=Os08t0556300-01;Locus_id=Os08g0556300;Note=Glycolipid transfer protein domain domain containing protein.;Transcript_evidence=AK105201 (DDBJ%2C Best hit);ORF_evidence=B8B9F3 (UniProt);GO=Biological Process: glycolipid transport (GO:0046836),Cellular Component: cytoplasm (GO:0005737),Molecular Function: glycolipid transporter activity (GO:0017089),Molecular Function: glycolipid binding (GO:0051861);InterPro=Glycolipid transfer protein domain (IPR014830);NIAS_FLcDNA=001-108-C04;TENOR=Os08t0556300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	27838060	27838060	.	-	.	Parent=Os08t0556300-01
Chr08	irgsp1_rep	CDS	27837519	27838059	.	-	0	Parent=Os08t0556300-01
Chr08	irgsp1_rep	CDS	27834744	27834850	.	-	2	Parent=Os08t0556300-01
Chr08	irgsp1_rep	three_prime_UTR	27834584	27834743	.	-	.	Parent=Os08t0556300-01
Chr08	irgsp1_rep	mRNA	27842429	27847633	.	+	.	ID=Os08t0556400-01;Name=Os08t0556400-01;Locus_id=Os08g0556400;Note=Zinc finger%2C DHHC-type domain containing protein.;Transcript_evidence=AK099715 (DDBJ%2C Best hit);ORF_evidence=NP_193244.2 (RefSeq);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C DHHC-type%2C palmitoyltransferase (IPR001594);NIAS_FLcDNA=J013085B05;Expression=AK099715;TENOR=Os08t0556400-01;KEGG=Os08t0556400-01
Chr08	irgsp1_rep	five_prime_UTR	27842429	27842561	.	+	.	Parent=Os08t0556400-01
Chr08	irgsp1_rep	CDS	27842562	27842606	.	+	0	Parent=Os08t0556400-01
Chr08	irgsp1_rep	CDS	27844095	27844208	.	+	0	Parent=Os08t0556400-01
Chr08	irgsp1_rep	CDS	27844304	27844699	.	+	0	Parent=Os08t0556400-01
Chr08	irgsp1_rep	CDS	27844853	27844921	.	+	0	Parent=Os08t0556400-01
Chr08	irgsp1_rep	CDS	27844993	27845064	.	+	0	Parent=Os08t0556400-01
Chr08	irgsp1_rep	CDS	27845199	27845324	.	+	0	Parent=Os08t0556400-01
Chr08	irgsp1_rep	CDS	27845406	27845486	.	+	0	Parent=Os08t0556400-01
Chr08	irgsp1_rep	CDS	27845606	27845800	.	+	0	Parent=Os08t0556400-01
Chr08	irgsp1_rep	CDS	27846260	27847255	.	+	0	Parent=Os08t0556400-01
Chr08	irgsp1_rep	three_prime_UTR	27847256	27847633	.	+	.	Parent=Os08t0556400-01
Chr08	irgsp1_rep	mRNA	27845797	27847571	.	+	.	ID=Os08t0556400-02;Name=Os08t0556400-02;Locus_id=Os08g0556400;Note=Hypothetical conserved gene.;Transcript_evidence=AK106793 (DDBJ%2C Best hit);ORF_evidence=Q6ZJ21 (UniProt);NIAS_FLcDNA=002-116-A11;Expression=AK106793;TENOR=Os08t0556400-02;KEGG=Os08t0556400-02
Chr08	irgsp1_rep	five_prime_UTR	27845797	27846244	.	+	.	Parent=Os08t0556400-02
Chr08	irgsp1_rep	CDS	27846245	27847255	.	+	0	Parent=Os08t0556400-02
Chr08	irgsp1_rep	three_prime_UTR	27847256	27847571	.	+	.	Parent=Os08t0556400-02
Chr08	irgsp1_rep	mRNA	27842523	27847002	.	-	.	ID=Os08t0556450-00;Name=Os08t0556450-00;Locus_id=Os08g0556450;Note=Hypothetical protein.;Transcript_evidence=tplb0061k11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0556450-00
Chr08	irgsp1_rep	CDS	27846695	27847002	.	-	0	Parent=Os08t0556450-00
Chr08	irgsp1_rep	CDS	27846519	27846567	.	-	1	Parent=Os08t0556450-00
Chr08	irgsp1_rep	three_prime_UTR	27846257	27846518	.	-	.	Parent=Os08t0556450-00
Chr08	irgsp1_rep	three_prime_UTR	27845598	27845797	.	-	.	Parent=Os08t0556450-00
Chr08	irgsp1_rep	three_prime_UTR	27845395	27845474	.	-	.	Parent=Os08t0556450-00
Chr08	irgsp1_rep	three_prime_UTR	27845198	27845316	.	-	.	Parent=Os08t0556450-00
Chr08	irgsp1_rep	three_prime_UTR	27844992	27845063	.	-	.	Parent=Os08t0556450-00
Chr08	irgsp1_rep	three_prime_UTR	27844851	27844920	.	-	.	Parent=Os08t0556450-00
Chr08	irgsp1_rep	three_prime_UTR	27844288	27844697	.	-	.	Parent=Os08t0556450-00
Chr08	irgsp1_rep	three_prime_UTR	27844109	27844195	.	-	.	Parent=Os08t0556450-00
Chr08	irgsp1_rep	three_prime_UTR	27842523	27842615	.	-	.	Parent=Os08t0556450-00
Chr08	irgsp1_rep	mRNA	27849458	27849918	.	+	.	ID=Os08t0556500-00;Name=Os08t0556500-00;Locus_id=Os08g0556500;Note=Similar to predicted protein.;Transcript_evidence=EU942110 (DDBJ);ORF_evidence=NP_196464.2 (RefSeq);GO=Biological Process: peroxisome organization (GO:0007031),Cellular Component: peroxisome (GO:0005777),Molecular Function: ATP binding (GO:0005524);InterPro=Peroxisome biogenesis factor 1%2C N-terminal (IPR015342);TENOR=Os08t0556500-00;KEGG=Os08t0556500-00
Chr08	irgsp1_rep	CDS	27849458	27849697	.	+	0	Parent=Os08t0556500-00
Chr08	irgsp1_rep	CDS	27849796	27849918	.	+	0	Parent=Os08t0556500-00
Chr08	irgsp1_rep	mRNA	27855280	27856246	.	+	.	ID=Os08t0556550-01;Name=Os08t0556550-01;Locus_id=Os08g0556550;Note=Hypothetical conserved gene.;Transcript_evidence=AK242056 (DDBJ%2C Best hit);ORF_evidence=NP_001062476.2 (RefSeq);NIAS_FLcDNA=J075125P03;TENOR=Os08t0556550-01;KEGG=Os08t0556550-01
Chr08	irgsp1_rep	five_prime_UTR	27855280	27855281	.	+	.	Parent=Os08t0556550-01
Chr08	irgsp1_rep	CDS	27855282	27855566	.	+	0	Parent=Os08t0556550-01
Chr08	irgsp1_rep	CDS	27855717	27855755	.	+	0	Parent=Os08t0556550-01
Chr08	irgsp1_rep	three_prime_UTR	27855756	27855774	.	+	.	Parent=Os08t0556550-01
Chr08	irgsp1_rep	three_prime_UTR	27855884	27856246	.	+	.	Parent=Os08t0556550-01
Chr08	irgsp1_rep	mRNA	27856840	27858391	.	+	.	ID=Os08t0556600-01;Name=Os08t0556600-01;Locus_id=Os08g0556600;Note=Similar to Fb14.;Transcript_evidence=AK121358 (DDBJ%2C Best hit);ORF_evidence=B6SPR5 (UniProt);NIAS_FLcDNA=J023123D21;Expression=AK121358;TENOR=Os08t0556600-01;KEGG=Os08t0556600-01 (EC:1.6.5.3%2C EC:1.6.99.3)
Chr08	irgsp1_rep	five_prime_UTR	27856840	27856932	.	+	.	Parent=Os08t0556600-01
Chr08	irgsp1_rep	CDS	27856933	27857082	.	+	0	Parent=Os08t0556600-01
Chr08	irgsp1_rep	CDS	27858093	27858215	.	+	0	Parent=Os08t0556600-01
Chr08	irgsp1_rep	three_prime_UTR	27858216	27858391	.	+	.	Parent=Os08t0556600-01
Chr08	irgsp1_rep	mRNA	27859014	27868248	.	+	.	ID=Os08t0556650-00;Name=Os08t0556650-00;Locus_id=Os08g0556650;Note=Non-protein coding transcript.;Transcript_evidence=tplb0027a05 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os08t0556650-00
Chr08	irgsp1_rep	exon	27859014	27859982	.	+	.	Parent=Os08t0556650-00
Chr08	irgsp1_rep	exon	27860243	27860525	.	+	.	Parent=Os08t0556650-00
Chr08	irgsp1_rep	exon	27861247	27861333	.	+	.	Parent=Os08t0556650-00
Chr08	irgsp1_rep	exon	27862021	27862293	.	+	.	Parent=Os08t0556650-00
Chr08	irgsp1_rep	exon	27862661	27862746	.	+	.	Parent=Os08t0556650-00
Chr08	irgsp1_rep	exon	27863195	27863360	.	+	.	Parent=Os08t0556650-00
Chr08	irgsp1_rep	exon	27863752	27863892	.	+	.	Parent=Os08t0556650-00
Chr08	irgsp1_rep	exon	27863982	27864078	.	+	.	Parent=Os08t0556650-00
Chr08	irgsp1_rep	exon	27864543	27864597	.	+	.	Parent=Os08t0556650-00
Chr08	irgsp1_rep	exon	27864672	27864753	.	+	.	Parent=Os08t0556650-00
Chr08	irgsp1_rep	exon	27865024	27865094	.	+	.	Parent=Os08t0556650-00
Chr08	irgsp1_rep	exon	27865181	27865473	.	+	.	Parent=Os08t0556650-00
Chr08	irgsp1_rep	exon	27866076	27866179	.	+	.	Parent=Os08t0556650-00
Chr08	irgsp1_rep	exon	27866301	27866386	.	+	.	Parent=Os08t0556650-00
Chr08	irgsp1_rep	exon	27866710	27866771	.	+	.	Parent=Os08t0556650-00
Chr08	irgsp1_rep	exon	27867697	27867771	.	+	.	Parent=Os08t0556650-00
Chr08	irgsp1_rep	exon	27868128	27868248	.	+	.	Parent=Os08t0556650-00
Chr08	irgsp1_rep	mRNA	27859063	27868317	.	-	.	ID=Os08t0556700-01;Name=Os08t0556700-01;Locus_id=Os08g0556700;Note=Similar to phosphatase/ protein tyrosine phosphatase.;Transcript_evidence=AK099902 (DDBJ%2C Best hit);ORF_evidence=NP_187666.5 (RefSeq);GO=Biological Process: dephosphorylation (GO:0016311),Molecular Function: protein tyrosine phosphatase activity (GO:0004725),Molecular Function: phosphatase activity (GO:0016791);InterPro=Myotubularin-related (IPR010569),Protein-tyrosine phosphatase%2C active site (IPR016130),Myotubularin phosphatase domain (IPR017906);NIAS_FLcDNA=J013114G10;TENOR=Os08t0556700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	CDS	27868129	27868317	.	-	0	Parent=Os08t0556700-01
Chr08	irgsp1_rep	CDS	27867698	27867772	.	-	0	Parent=Os08t0556700-01
Chr08	irgsp1_rep	CDS	27866698	27866772	.	-	0	Parent=Os08t0556700-01
Chr08	irgsp1_rep	CDS	27866307	27866375	.	-	0	Parent=Os08t0556700-01
Chr08	irgsp1_rep	CDS	27866113	27866182	.	-	0	Parent=Os08t0556700-01
Chr08	irgsp1_rep	CDS	27865620	27865669	.	-	2	Parent=Os08t0556700-01
Chr08	irgsp1_rep	CDS	27865181	27865461	.	-	0	Parent=Os08t0556700-01
Chr08	irgsp1_rep	CDS	27865021	27865094	.	-	1	Parent=Os08t0556700-01
Chr08	irgsp1_rep	CDS	27864688	27864751	.	-	2	Parent=Os08t0556700-01
Chr08	irgsp1_rep	CDS	27864538	27864603	.	-	1	Parent=Os08t0556700-01
Chr08	irgsp1_rep	CDS	27863977	27864076	.	-	1	Parent=Os08t0556700-01
Chr08	irgsp1_rep	CDS	27863758	27863889	.	-	0	Parent=Os08t0556700-01
Chr08	irgsp1_rep	CDS	27863195	27863358	.	-	0	Parent=Os08t0556700-01
Chr08	irgsp1_rep	CDS	27862662	27862746	.	-	1	Parent=Os08t0556700-01
Chr08	irgsp1_rep	CDS	27862028	27862294	.	-	0	Parent=Os08t0556700-01
Chr08	irgsp1_rep	three_prime_UTR	27861403	27862027	.	-	.	Parent=Os08t0556700-01
Chr08	irgsp1_rep	three_prime_UTR	27860247	27861312	.	-	.	Parent=Os08t0556700-01
Chr08	irgsp1_rep	three_prime_UTR	27859063	27859980	.	-	.	Parent=Os08t0556700-01
Chr08	irgsp1_rep	mRNA	27875142	27876577	.	+	.	ID=Os08t0556900-01;Name=Os08t0556900-01;Locus_id=Os08g0556900;Oryzabase Gene Symbol Synonym(s)=CP%2C OsSAG12-2%2C SAG12-2;Oryzabase Gene Name Synonym(s)=Cys protease%2C cysteine protease%2C senescence-associated gene 12-2;Note=Similar to Cysteine proteinase (EC 3.4.22.-).;Transcript_evidence=AK072235 (DDBJ%2C Best hit),AK099308 (DDBJ%2C Best hit);ORF_evidence=B6TYM9 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase%2C cysteine peptidase active site (IPR000169),Peptidase C1A%2C papain C-terminal (IPR000668),Peptidase C1A%2C papain (IPR013128),Proteinase inhibitor I29%2C cathepsin propeptide (IPR013201);NIAS_FLcDNA=J023001J24,J023144C09;Oryzabase=14983;TENOR=Os08t0556900-01
Chr08	irgsp1_rep	five_prime_UTR	27875142	27875218	.	+	.	Parent=Os08t0556900-01
Chr08	irgsp1_rep	CDS	27875219	27876376	.	+	0	Parent=Os08t0556900-01
Chr08	irgsp1_rep	three_prime_UTR	27876377	27876577	.	+	.	Parent=Os08t0556900-01
Chr08	irgsp1_rep	mRNA	27875227	27876577	.	+	.	ID=Os08t0556900-02;Name=Os08t0556900-02;Locus_id=Os08g0556900;Oryzabase Gene Symbol Synonym(s)=CP%2C OsSAG12-2%2C SAG12-2;Oryzabase Gene Name Synonym(s)=Cys protease%2C cysteine protease%2C senescence-associated gene 12-2;Note=Similar to Vignain.;Transcript_evidence=AK105612 (DDBJ%2C Best hit);ORF_evidence=B6TYM9 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase%2C cysteine peptidase active site (IPR000169),Peptidase C1A%2C papain C-terminal (IPR000668),Peptidase C1A%2C papain (IPR013128),Proteinase inhibitor I29%2C cathepsin propeptide (IPR013201);NIAS_FLcDNA=001-200-B06;Oryzabase=14983;TENOR=Os08t0556900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	27875227	27875308	.	+	.	Parent=Os08t0556900-02
Chr08	irgsp1_rep	CDS	27875309	27876376	.	+	0	Parent=Os08t0556900-02
Chr08	irgsp1_rep	three_prime_UTR	27876377	27876577	.	+	.	Parent=Os08t0556900-02
Chr08	irgsp1_rep	mRNA	27877376	27880017	.	+	.	ID=Os08t0557000-01;Name=Os08t0557000-01;Locus_id=Os08g0557000;RAP-DB Gene Symbol Synonym(s)=PIMT1%2C OsPIMT1;RAP-DB Gene Name Synonym(s)=PROTEIN REPAIR L-ISOASPARTYL METHYLTRANSFERASE 1%2C Protein repair L-isoaspartyl methyltransferase 1;CGSNL Gene Symbol=PIMT1;CGSNL Gene Name=PROTEIN REPAIR L-ISOASPARTYL METHYLTRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=OsPIMT1%2C OsPIMT1';Oryzabase Gene Name Synonym(s)=Protein repair L-isoaspartyl methyltransferase 1%2C PROTEIN L-ISOASPARTYL O-METHYLTRANSFERASE  1;Note=L-isoaspartate methyltransferase%2C iso-Asp-containing protein repairing enzyme%2C Seed vigor and longevity;Transcript_evidence=KM527502,AK100496,AK059917;ORF_evidence=Q6ZJ17;GO=Biological Process: cellular protein modification process (GO:0006464),Molecular Function: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity (GO:0004719);InterPro=Protein-L-isoaspartate(D-aspartate) O-methyltransferase (IPR000682),S-adenosyl-L-methionine-dependent methyltransferase (IPR029063);NIAS_FLcDNA=J023099B17, 006-209-F04;Manual Curation=November 4%2C 2015;Literature_PMID=26438231;Oryzabase=20396;TENOR=Os08t0557000-01;KEGG=Os08t0557000-01 (EC:2.1.1.77)
Chr08	irgsp1_rep	five_prime_UTR	27877376	27877568	.	+	.	Parent=Os08t0557000-01
Chr08	irgsp1_rep	CDS	27877569	27877574	.	+	0	Parent=Os08t0557000-01
Chr08	irgsp1_rep	CDS	27878132	27878405	.	+	0	Parent=Os08t0557000-01
Chr08	irgsp1_rep	CDS	27878995	27879159	.	+	2	Parent=Os08t0557000-01
Chr08	irgsp1_rep	CDS	27879595	27879845	.	+	2	Parent=Os08t0557000-01
Chr08	irgsp1_rep	three_prime_UTR	27879846	27880017	.	+	.	Parent=Os08t0557000-01
Chr08	irgsp1_rep	mRNA	27880267	27882184	.	-	.	ID=Os08t0557100-01;Name=Os08t0557100-01;Locus_id=Os08g0557100;Note=Similar to Nucleic acid-binding protein precursor.;Transcript_evidence=AK101214 (DDBJ%2C Best hit);ORF_evidence=Q6ZJ16 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033031B04;Expression=AK101214;TENOR=Os08t0557100-01;KEGG=Os08t0557100-01
Chr08	irgsp1_rep	five_prime_UTR	27882164	27882184	.	-	.	Parent=Os08t0557100-01
Chr08	irgsp1_rep	CDS	27882116	27882163	.	-	0	Parent=Os08t0557100-01
Chr08	irgsp1_rep	CDS	27881644	27881733	.	-	0	Parent=Os08t0557100-01
Chr08	irgsp1_rep	CDS	27881404	27881505	.	-	0	Parent=Os08t0557100-01
Chr08	irgsp1_rep	CDS	27880791	27881072	.	-	0	Parent=Os08t0557100-01
Chr08	irgsp1_rep	CDS	27880587	27880649	.	-	0	Parent=Os08t0557100-01
Chr08	irgsp1_rep	three_prime_UTR	27880267	27880586	.	-	.	Parent=Os08t0557100-01
Chr08	irgsp1_rep	mRNA	27880342	27882184	.	-	.	ID=Os08t0557100-02;Name=Os08t0557100-02;Locus_id=Os08g0557100;Note=28 kDa ribonucleoprotein%2C chloroplast precursor (28RNP).;Transcript_evidence=AK105901 (DDBJ%2C Best hit),AK070743 (DDBJ%2C Best hit);ORF_evidence=B6TAI9 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-204-F09,J023062K14;Expression=AK105901;TENOR=Os08t0557100-02;KEGG=Os08t0557100-02
Chr08	irgsp1_rep	five_prime_UTR	27882115	27882184	.	-	.	Parent=Os08t0557100-02
Chr08	irgsp1_rep	CDS	27881644	27882114	.	-	0	Parent=Os08t0557100-02
Chr08	irgsp1_rep	CDS	27881404	27881505	.	-	0	Parent=Os08t0557100-02
Chr08	irgsp1_rep	CDS	27880791	27881072	.	-	0	Parent=Os08t0557100-02
Chr08	irgsp1_rep	CDS	27880587	27880649	.	-	0	Parent=Os08t0557100-02
Chr08	irgsp1_rep	three_prime_UTR	27880342	27880586	.	-	.	Parent=Os08t0557100-02
Chr08	irgsp1_rep	mRNA	27880780	27882101	.	+	.	ID=Os08t0557150-00;Name=Os08t0557150-00;Locus_id=Os08g0557150;Note=Hypothetical gene.;Transcript_evidence=BT019263 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0557150-00
Chr08	irgsp1_rep	five_prime_UTR	27880780	27881063	.	+	.	Parent=Os08t0557150-00
Chr08	irgsp1_rep	five_prime_UTR	27881392	27881422	.	+	.	Parent=Os08t0557150-00
Chr08	irgsp1_rep	CDS	27881423	27881496	.	+	0	Parent=Os08t0557150-00
Chr08	irgsp1_rep	CDS	27881635	27882101	.	+	1	Parent=Os08t0557150-00
Chr08	irgsp1_rep	mRNA	27884019	27885268	.	-	.	ID=Os08t0557200-01;Name=Os08t0557200-01;Locus_id=Os08g0557200;Note=Metallophosphoesterase domain containing protein.;Transcript_evidence=AK108300 (DDBJ%2C Best hit);ORF_evidence=NP_974609.1 (RefSeq);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Metallophosphoesterase domain (IPR004843);NIAS_FLcDNA=002-141-E12;Expression=AK108300;TENOR=Os08t0557200-01;KEGG=Os08t0557200-01
Chr08	irgsp1_rep	five_prime_UTR	27885148	27885268	.	-	.	Parent=Os08t0557200-01
Chr08	irgsp1_rep	CDS	27884128	27885147	.	-	0	Parent=Os08t0557200-01
Chr08	irgsp1_rep	three_prime_UTR	27884019	27884127	.	-	.	Parent=Os08t0557200-01
Chr08	irgsp1_rep	mRNA	27888907	27893038	.	-	.	ID=Os08t0557400-01;Name=Os08t0557400-01;Locus_id=Os08g0557400;Oryzabase Gene Symbol Synonym(s)=OsPP104;Oryzabase Gene Name Synonym(s)=Protein phosphatase 104;Note=Protein tyrosine phosphatase-like protein.;Transcript_evidence=AK060067 (DDBJ%2C Best hit);ORF_evidence=Q84PD6 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Molecular Function: protein tyrosine phosphatase activity (GO:0004725);InterPro=Protein-tyrosine phosphatase/arsenate reductase (IPR000106),Protein-tyrosine phosphatase%2C low molecular weight (IPR017867),Phosphotyrosine protein phosphatase I superfamily (IPR023485);NIAS_FLcDNA=006-305-H07;Oryzabase=18652;Expression=AK060067;TENOR=Os08t0557400-01;KEGG=Os08t0557400-01 (EC:3.1.3.2%2C EC:3.1.3.48)
Chr08	irgsp1_rep	five_prime_UTR	27892927	27893038	.	-	.	Parent=Os08t0557400-01
Chr08	irgsp1_rep	CDS	27892602	27892926	.	-	0	Parent=Os08t0557400-01
Chr08	irgsp1_rep	CDS	27891595	27891707	.	-	2	Parent=Os08t0557400-01
Chr08	irgsp1_rep	CDS	27891374	27891509	.	-	0	Parent=Os08t0557400-01
Chr08	irgsp1_rep	CDS	27891213	27891280	.	-	2	Parent=Os08t0557400-01
Chr08	irgsp1_rep	CDS	27890043	27890129	.	-	0	Parent=Os08t0557400-01
Chr08	irgsp1_rep	CDS	27889127	27889204	.	-	0	Parent=Os08t0557400-01
Chr08	irgsp1_rep	three_prime_UTR	27888907	27889126	.	-	.	Parent=Os08t0557400-01
Chr08	irgsp1_rep	mRNA	27893370	27898831	.	+	.	ID=Os08t0557500-01;Name=Os08t0557500-01;Locus_id=Os08g0557500;CGSNL Gene Symbol=CYP71;CGSNL Gene Name=CYCLOPHILIN 71;Oryzabase Gene Symbol Synonym(s)=OsCYP71%2C OsWD40-164%2C OsCYP-22%2C OsCYP71a%2C OsCYP71b;Oryzabase Gene Name Synonym(s)=cyclophilin 71%2C cyclophilin 22;Note=Similar to peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein.;Transcript_evidence=AK111654 (DDBJ%2C Best hit);ORF_evidence=XP_002877347.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J013147N22;Oryzabase=10077;TENOR=Os08t0557500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	27893370	27893443	.	+	.	Parent=Os08t0557500-01
Chr08	irgsp1_rep	CDS	27893444	27893688	.	+	0	Parent=Os08t0557500-01
Chr08	irgsp1_rep	CDS	27893775	27893860	.	+	1	Parent=Os08t0557500-01
Chr08	irgsp1_rep	CDS	27894184	27894272	.	+	2	Parent=Os08t0557500-01
Chr08	irgsp1_rep	CDS	27894435	27894674	.	+	0	Parent=Os08t0557500-01
Chr08	irgsp1_rep	CDS	27894769	27894890	.	+	0	Parent=Os08t0557500-01
Chr08	irgsp1_rep	CDS	27895345	27895420	.	+	1	Parent=Os08t0557500-01
Chr08	irgsp1_rep	CDS	27895518	27895625	.	+	0	Parent=Os08t0557500-01
Chr08	irgsp1_rep	CDS	27895707	27895883	.	+	0	Parent=Os08t0557500-01
Chr08	irgsp1_rep	CDS	27896201	27896418	.	+	0	Parent=Os08t0557500-01
Chr08	irgsp1_rep	CDS	27896555	27896681	.	+	1	Parent=Os08t0557500-01
Chr08	irgsp1_rep	CDS	27896825	27896848	.	+	0	Parent=Os08t0557500-01
Chr08	irgsp1_rep	three_prime_UTR	27896849	27897049	.	+	.	Parent=Os08t0557500-01
Chr08	irgsp1_rep	three_prime_UTR	27897294	27897447	.	+	.	Parent=Os08t0557500-01
Chr08	irgsp1_rep	three_prime_UTR	27897539	27897635	.	+	.	Parent=Os08t0557500-01
Chr08	irgsp1_rep	three_prime_UTR	27898458	27898831	.	+	.	Parent=Os08t0557500-01
Chr08	irgsp1_rep	mRNA	27894635	27898769	.	+	.	ID=Os08t0557500-02;Name=Os08t0557500-02;Locus_id=Os08g0557500;CGSNL Gene Symbol=CYP71;CGSNL Gene Name=CYCLOPHILIN 71;Oryzabase Gene Symbol Synonym(s)=OsCYP71%2C OsWD40-164%2C OsCYP-22%2C OsCYP71a%2C OsCYP71b;Oryzabase Gene Name Synonym(s)=cyclophilin 71%2C cyclophilin 22;Note=Similar to predicted protein.;Transcript_evidence=AK111941 (DDBJ%2C Best hit);ORF_evidence=XP_002877347.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755),Molecular Function: protein binding (GO:0005515);InterPro=Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type (IPR002130),WD40 repeat-like-containing domain (IPR011046),Cyclophilin-like (IPR015891),WD40/YVTN repeat-like-containing domain (IPR015943),Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type%2C conserved site (IPR020892);NIAS_FLcDNA=001-021-E10;Oryzabase=10077;Expression=AK111941;TENOR=Os08t0557500-02;KEGG=Os08t0557500-02 (EC:5.2.1.8)
Chr08	irgsp1_rep	five_prime_UTR	27894635	27894635	.	+	.	Parent=Os08t0557500-02
Chr08	irgsp1_rep	CDS	27894636	27894674	.	+	0	Parent=Os08t0557500-02
Chr08	irgsp1_rep	CDS	27894769	27894890	.	+	0	Parent=Os08t0557500-02
Chr08	irgsp1_rep	CDS	27895345	27895420	.	+	1	Parent=Os08t0557500-02
Chr08	irgsp1_rep	CDS	27895518	27895625	.	+	0	Parent=Os08t0557500-02
Chr08	irgsp1_rep	CDS	27895707	27895883	.	+	0	Parent=Os08t0557500-02
Chr08	irgsp1_rep	CDS	27896201	27896418	.	+	0	Parent=Os08t0557500-02
Chr08	irgsp1_rep	CDS	27896555	27896687	.	+	1	Parent=Os08t0557500-02
Chr08	irgsp1_rep	CDS	27896826	27897049	.	+	0	Parent=Os08t0557500-02
Chr08	irgsp1_rep	CDS	27897294	27897447	.	+	1	Parent=Os08t0557500-02
Chr08	irgsp1_rep	CDS	27897539	27897622	.	+	0	Parent=Os08t0557500-02
Chr08	irgsp1_rep	three_prime_UTR	27897623	27897635	.	+	.	Parent=Os08t0557500-02
Chr08	irgsp1_rep	three_prime_UTR	27898458	27898769	.	+	.	Parent=Os08t0557500-02
Chr08	irgsp1_rep	mRNA	27899853	27903121	.	+	.	ID=Os08t0557600-01;Name=Os08t0557600-01;Locus_id=Os08g0557600;CGSNL Gene Symbol=MDHAR4;CGSNL Gene Name=MONODEHYDROASCORBATE REDUCTASE 4;Oryzabase Gene Symbol Synonym(s)=OsMDAR4%2C MDAR4%2C OsMDHAR4;Oryzabase Gene Name Synonym(s)=monodehydroascorbate reductase 4;Note=Similar to Monodehydroascorbate reductase (EC 1.6.5.4) (MDAR) (Ascorbate free radical reductase) (AFR reductase).;Transcript_evidence=AK102459 (DDBJ%2C Best hit);ORF_evidence=Q9SXX0 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: cytoplasm (GO:0005737),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Pyridine nucleotide-disulphide oxidoreductase%2C NAD-binding domain (IPR001327),Pyridine nucleotide-disulphide oxidoreductase%2C dimerisation (IPR004099),FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR013027),FAD/NAD-linked reductase%2C dimerisation (IPR016156),Pyridine nucleotide-disulphide oxidoreductase%2C FAD/NAD(P)-binding domain (IPR023753);NIAS_FLcDNA=J033094C01;Oryzabase=16099;Expression=AK102459;TENOR=Os08t0557600-01;KEGG=Os08t0557600-01 (EC:1.6.5.4)
Chr08	irgsp1_rep	five_prime_UTR	27899853	27899948	.	+	.	Parent=Os08t0557600-01
Chr08	irgsp1_rep	CDS	27899949	27900002	.	+	0	Parent=Os08t0557600-01
Chr08	irgsp1_rep	CDS	27900117	27900188	.	+	0	Parent=Os08t0557600-01
Chr08	irgsp1_rep	CDS	27900291	27900342	.	+	0	Parent=Os08t0557600-01
Chr08	irgsp1_rep	CDS	27900467	27900547	.	+	2	Parent=Os08t0557600-01
Chr08	irgsp1_rep	CDS	27901010	27901128	.	+	2	Parent=Os08t0557600-01
Chr08	irgsp1_rep	CDS	27901344	27901563	.	+	0	Parent=Os08t0557600-01
Chr08	irgsp1_rep	CDS	27901717	27901835	.	+	2	Parent=Os08t0557600-01
Chr08	irgsp1_rep	CDS	27901925	27902050	.	+	0	Parent=Os08t0557600-01
Chr08	irgsp1_rep	CDS	27902235	27902375	.	+	0	Parent=Os08t0557600-01
Chr08	irgsp1_rep	CDS	27902482	27902805	.	+	0	Parent=Os08t0557600-01
Chr08	irgsp1_rep	three_prime_UTR	27902806	27903121	.	+	.	Parent=Os08t0557600-01
Chr08	irgsp1_rep	mRNA	27902322	27903121	.	+	.	ID=Os08t0557600-02;Name=Os08t0557600-02;Locus_id=Os08g0557600;CGSNL Gene Symbol=MDHAR4;CGSNL Gene Name=MONODEHYDROASCORBATE REDUCTASE 4;Oryzabase Gene Symbol Synonym(s)=OsMDAR4%2C MDAR4%2C OsMDHAR4;Oryzabase Gene Name Synonym(s)=monodehydroascorbate reductase 4;Note=Similar to Cytosolic monodehydroascorbate reductase.;Transcript_evidence=AK059351 (DDBJ%2C Best hit);ORF_evidence=Q9XFZ3 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: cytoplasm (GO:0005737),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Pyridine nucleotide-disulphide oxidoreductase%2C dimerisation (IPR004099),FAD/NAD-linked reductase%2C dimerisation (IPR016156);NIAS_FLcDNA=001-026-C10;Oryzabase=16099;Expression=AK059351;TENOR=Os08t0557600-02;KEGG=Os08t0557600-02 (EC:1.6.5.4)
Chr08	irgsp1_rep	CDS	27902322	27902375	.	+	0	Parent=Os08t0557600-02
Chr08	irgsp1_rep	CDS	27902482	27902805	.	+	0	Parent=Os08t0557600-02
Chr08	irgsp1_rep	three_prime_UTR	27902806	27903121	.	+	.	Parent=Os08t0557600-02
Chr08	irgsp1_rep	mRNA	27904602	27909510	.	+	.	ID=Os08t0557700-01;Name=Os08t0557700-01;Locus_id=Os08g0557700;RAP-DB Gene Symbol Synonym(s)=AHP1%2C OHP1%2C HPt%2C OsAHP1%2C Hpt2%2C Ohp1%2C OsHP2%2C OsHpt2%2C OsHPt2;RAP-DB Gene Name Synonym(s)=HISTIDINE CONTAINING PHOSPHOTRANSMITTER 1%2C histidine containing phosphotransmitter%2C authentic His-containing phosphotransfer protein 1%2C Authentic Histidine Phosphotransfer protein 1;CGSNL Gene Symbol=AHP1;CGSNL Gene Name=HISTIDINE CONTAINING PHOSPHOTRANSMITTER 1;Oryzabase Gene Symbol Synonym(s)=OHP1%2C HPt%2C OsAHP1%2C Hpt2%2C Ohp1%2C OsHP2%2C OsHpt2%2C OsHPt2;Oryzabase Gene Name Synonym(s)=histidine containing phosphotransmitter%2C authentic His-containing phosphotransfer protein 1%2C Authentic Histidine Phosphotransfer protein 1;Note=Histidine phosphotransfer protein%2C Cytokinin signaling and stress response;Transcript_evidence=AK061111;ORF_evidence=Q6VAK3;GO=Biological Process: phosphorelay signal transduction system (GO:0000160),Molecular Function: signal transducer activity (GO:0004871);InterPro=Signal transduction histidine kinase%2C phosphotransfer (Hpt) domain (IPR008207);NIAS_FLcDNA=006-207-D05;Manual Curation=May 8%2C 2014;Literature_PMID=24578505;Oryzabase=8146;TENOR=Os08t0557700-01;KEGG=Os08t0557700-01
Chr08	irgsp1_rep	five_prime_UTR	27904602	27904924	.	+	.	Parent=Os08t0557700-01
Chr08	irgsp1_rep	CDS	27904925	27904984	.	+	0	Parent=Os08t0557700-01
Chr08	irgsp1_rep	CDS	27905121	27905251	.	+	0	Parent=Os08t0557700-01
Chr08	irgsp1_rep	CDS	27905410	27905478	.	+	1	Parent=Os08t0557700-01
Chr08	irgsp1_rep	CDS	27907101	27907172	.	+	1	Parent=Os08t0557700-01
Chr08	irgsp1_rep	CDS	27908248	27908320	.	+	1	Parent=Os08t0557700-01
Chr08	irgsp1_rep	CDS	27909101	27909139	.	+	0	Parent=Os08t0557700-01
Chr08	irgsp1_rep	three_prime_UTR	27909140	27909510	.	+	.	Parent=Os08t0557700-01
Chr08	irgsp1_rep	mRNA	27916313	27922609	.	+	.	ID=Os08t0557800-01;Name=Os08t0557800-01;Locus_id=Os08g0557800;Note=Similar to Fatty acyl coA reductase.;Transcript_evidence=AK069659 (DDBJ%2C Best hit);ORF_evidence=B6U0V0 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620);InterPro=Male sterility (IPR004262),Male sterility%2C NAD-binding (IPR013120),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023028D15;Oryzabase=23070;Expression=AK069659;TENOR=Os08t0557800-01;KEGG=Os08t0557800-01
Chr08	irgsp1_rep	five_prime_UTR	27916313	27916535	.	+	.	Parent=Os08t0557800-01
Chr08	irgsp1_rep	CDS	27916536	27916632	.	+	0	Parent=Os08t0557800-01
Chr08	irgsp1_rep	CDS	27916784	27916887	.	+	2	Parent=Os08t0557800-01
Chr08	irgsp1_rep	CDS	27920141	27920340	.	+	0	Parent=Os08t0557800-01
Chr08	irgsp1_rep	CDS	27920456	27920556	.	+	1	Parent=Os08t0557800-01
Chr08	irgsp1_rep	CDS	27920669	27921372	.	+	2	Parent=Os08t0557800-01
Chr08	irgsp1_rep	CDS	27921913	27922076	.	+	0	Parent=Os08t0557800-01
Chr08	irgsp1_rep	CDS	27922183	27922342	.	+	1	Parent=Os08t0557800-01
Chr08	irgsp1_rep	three_prime_UTR	27922343	27922609	.	+	.	Parent=Os08t0557800-01
Chr08	irgsp1_rep	mRNA	27916589	27921369	.	-	.	ID=Os08t0557850-00;Name=Os08t0557850-00;Locus_id=Os08g0557850;Note=Hypothetical protein.;Transcript_evidence=BT086400 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0557850-00
Chr08	irgsp1_rep	CDS	27920695	27921369	.	-	0	Parent=Os08t0557850-00
Chr08	irgsp1_rep	three_prime_UTR	27920555	27920694	.	-	.	Parent=Os08t0557850-00
Chr08	irgsp1_rep	three_prime_UTR	27920124	27920351	.	-	.	Parent=Os08t0557850-00
Chr08	irgsp1_rep	three_prime_UTR	27916589	27916861	.	-	.	Parent=Os08t0557850-00
Chr08	irgsp1_rep	mRNA	27922848	27926667	.	-	.	ID=Os08t0557900-01;Name=Os08t0557900-01;Locus_id=Os08g0557900;Note=Inosine/uridine-preferring nucleoside hydrolase domain containing protein.;Transcript_evidence=AK065324 (DDBJ%2C Best hit);ORF_evidence=B6THD4 (UniProt);InterPro=Inosine/uridine-preferring nucleoside hydrolase domain (IPR001910),Inosine/uridine-preferring nucleoside hydrolase (IPR023186);NIAS_FLcDNA=J013002P23;Expression=AK065324;TENOR=Os08t0557900-01;KEGG=Os08t0557900-01
Chr08	irgsp1_rep	five_prime_UTR	27926537	27926667	.	-	.	Parent=Os08t0557900-01
Chr08	irgsp1_rep	CDS	27926476	27926536	.	-	0	Parent=Os08t0557900-01
Chr08	irgsp1_rep	CDS	27925151	27925266	.	-	2	Parent=Os08t0557900-01
Chr08	irgsp1_rep	CDS	27925006	27925065	.	-	0	Parent=Os08t0557900-01
Chr08	irgsp1_rep	CDS	27924300	27924482	.	-	0	Parent=Os08t0557900-01
Chr08	irgsp1_rep	CDS	27924108	27924212	.	-	0	Parent=Os08t0557900-01
Chr08	irgsp1_rep	CDS	27923917	27924013	.	-	0	Parent=Os08t0557900-01
Chr08	irgsp1_rep	CDS	27923723	27923830	.	-	2	Parent=Os08t0557900-01
Chr08	irgsp1_rep	CDS	27923498	27923633	.	-	2	Parent=Os08t0557900-01
Chr08	irgsp1_rep	CDS	27923252	27923360	.	-	1	Parent=Os08t0557900-01
Chr08	irgsp1_rep	three_prime_UTR	27922848	27923251	.	-	.	Parent=Os08t0557900-01
Chr08	irgsp1_rep	mRNA	27929363	27931717	.	+	.	ID=Os08t0558000-01;Name=Os08t0558000-01;Locus_id=Os08g0558000;Note=Similar to Ribosomal protein.;Transcript_evidence=AK061522 (DDBJ%2C Best hit);ORF_evidence=C5YN77 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: large ribosomal subunit (GO:0015934),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L1 (IPR002143),Ribosomal protein L1%2C 2-layer alpha/beta-sandwich (IPR016094),Ribosomal protein L1%2C 3-layer alpha/beta-sandwich (IPR016095),Ribosomal protein L1%2C superfamily (IPR023674);NIAS_FLcDNA=006-310-B06;TENOR=Os08t0558000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	27929363	27929409	.	+	.	Parent=Os08t0558000-01
Chr08	irgsp1_rep	five_prime_UTR	27929553	27929579	.	+	.	Parent=Os08t0558000-01
Chr08	irgsp1_rep	CDS	27929580	27929584	.	+	0	Parent=Os08t0558000-01
Chr08	irgsp1_rep	CDS	27930081	27930300	.	+	1	Parent=Os08t0558000-01
Chr08	irgsp1_rep	CDS	27930611	27930780	.	+	0	Parent=Os08t0558000-01
Chr08	irgsp1_rep	CDS	27931121	27931199	.	+	1	Parent=Os08t0558000-01
Chr08	irgsp1_rep	three_prime_UTR	27931200	27931321	.	+	.	Parent=Os08t0558000-01
Chr08	irgsp1_rep	three_prime_UTR	27931453	27931717	.	+	.	Parent=Os08t0558000-01
Chr08	irgsp1_rep	mRNA	27931885	27934321	.	-	.	ID=Os08t0558100-01;Name=Os08t0558100-01;Locus_id=Os08g0558100;Note=EF hand domain containing protein.;Transcript_evidence=AK099458 (DDBJ%2C Best hit),AK065151 (DDBJ%2C Best hit);ORF_evidence=Q8GT88 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J013022O12,J013002B09;Expression=AK099458;TENOR=Os08t0558100-01;KEGG=Os08t0558100-01
Chr08	irgsp1_rep	five_prime_UTR	27934268	27934321	.	-	.	Parent=Os08t0558100-01
Chr08	irgsp1_rep	CDS	27933853	27934267	.	-	0	Parent=Os08t0558100-01
Chr08	irgsp1_rep	CDS	27933167	27933213	.	-	2	Parent=Os08t0558100-01
Chr08	irgsp1_rep	CDS	27932513	27932688	.	-	0	Parent=Os08t0558100-01
Chr08	irgsp1_rep	CDS	27932391	27932409	.	-	1	Parent=Os08t0558100-01
Chr08	irgsp1_rep	CDS	27932172	27932276	.	-	0	Parent=Os08t0558100-01
Chr08	irgsp1_rep	three_prime_UTR	27931885	27932171	.	-	.	Parent=Os08t0558100-01
Chr08	irgsp1_rep	mRNA	27938261	27941159	.	+	.	ID=Os08t0558200-01;Name=Os08t0558200-01;Locus_id=Os08g0558200;CGSNL Gene Symbol=GRX20;CGSNL Gene Name=GLUTAREDOXIN 20;Oryzabase Gene Symbol Synonym(s)=OsGRX20;Oryzabase Gene Name Synonym(s)=glutaredoxin 20;Note=Thioredoxin fold domain containing protein.;Transcript_evidence=AK069761 (DDBJ%2C Best hit);ORF_evidence=B4FN60 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=J023028D17;Oryzabase=13589;Expression=AK069761;TENOR=Os08t0558200-01;KEGG=Os08t0558200-01
Chr08	irgsp1_rep	five_prime_UTR	27938261	27938298	.	+	.	Parent=Os08t0558200-01
Chr08	irgsp1_rep	CDS	27938299	27938609	.	+	0	Parent=Os08t0558200-01
Chr08	irgsp1_rep	CDS	27938728	27938792	.	+	1	Parent=Os08t0558200-01
Chr08	irgsp1_rep	CDS	27939005	27939083	.	+	2	Parent=Os08t0558200-01
Chr08	irgsp1_rep	CDS	27939234	27939252	.	+	1	Parent=Os08t0558200-01
Chr08	irgsp1_rep	CDS	27939333	27939452	.	+	0	Parent=Os08t0558200-01
Chr08	irgsp1_rep	CDS	27939799	27939868	.	+	0	Parent=Os08t0558200-01
Chr08	irgsp1_rep	CDS	27939951	27939994	.	+	2	Parent=Os08t0558200-01
Chr08	irgsp1_rep	CDS	27940160	27940201	.	+	0	Parent=Os08t0558200-01
Chr08	irgsp1_rep	CDS	27940275	27940334	.	+	0	Parent=Os08t0558200-01
Chr08	irgsp1_rep	CDS	27940430	27940497	.	+	0	Parent=Os08t0558200-01
Chr08	irgsp1_rep	CDS	27940655	27940712	.	+	1	Parent=Os08t0558200-01
Chr08	irgsp1_rep	CDS	27940790	27940879	.	+	0	Parent=Os08t0558200-01
Chr08	irgsp1_rep	three_prime_UTR	27940880	27941159	.	+	.	Parent=Os08t0558200-01
Chr08	irgsp1_rep	mRNA	27942021	27942733	.	+	.	ID=Os08t0558300-00;Name=Os08t0558300-00;Locus_id=Os08g0558300;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=CT835925 (DDBJ%2C Best hit);ORF_evidence=NP_001062493.1 (RefSeq);GO=Biological Process: response to desiccation (GO:0009269);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864),Water stress and hypersensitive response domain (IPR013990);TENOR=Os08t0558300-00;KEGG=Os08t0558300-00
Chr08	irgsp1_rep	five_prime_UTR	27942021	27942039	.	+	.	Parent=Os08t0558300-00
Chr08	irgsp1_rep	CDS	27942040	27942618	.	+	0	Parent=Os08t0558300-00
Chr08	irgsp1_rep	three_prime_UTR	27942619	27942733	.	+	.	Parent=Os08t0558300-00
Chr08	irgsp1_rep	mRNA	27942709	27948818	.	-	.	ID=Os08t0558400-01;Name=Os08t0558400-01;Locus_id=Os08g0558400;Note=Similar to Kinesin heavy chain (Fragment).;Transcript_evidence=AK071334 (DDBJ%2C Best hit);ORF_evidence=Q93XF7 (UniProt);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752),Kinesin%2C motor region%2C conserved site (IPR019821);NIAS_FLcDNA=J023090L01;TENOR=Os08t0558400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	27948772	27948818	.	-	.	Parent=Os08t0558400-01
Chr08	irgsp1_rep	CDS	27948713	27948771	.	-	0	Parent=Os08t0558400-01
Chr08	irgsp1_rep	CDS	27948512	27948641	.	-	1	Parent=Os08t0558400-01
Chr08	irgsp1_rep	CDS	27947952	27948110	.	-	0	Parent=Os08t0558400-01
Chr08	irgsp1_rep	CDS	27947509	27947858	.	-	0	Parent=Os08t0558400-01
Chr08	irgsp1_rep	CDS	27947283	27947421	.	-	1	Parent=Os08t0558400-01
Chr08	irgsp1_rep	CDS	27947082	27947179	.	-	0	Parent=Os08t0558400-01
Chr08	irgsp1_rep	CDS	27946838	27947003	.	-	1	Parent=Os08t0558400-01
Chr08	irgsp1_rep	three_prime_UTR	27946504	27946837	.	-	.	Parent=Os08t0558400-01
Chr08	irgsp1_rep	three_prime_UTR	27946349	27946425	.	-	.	Parent=Os08t0558400-01
Chr08	irgsp1_rep	three_prime_UTR	27945979	27946185	.	-	.	Parent=Os08t0558400-01
Chr08	irgsp1_rep	three_prime_UTR	27945788	27945899	.	-	.	Parent=Os08t0558400-01
Chr08	irgsp1_rep	three_prime_UTR	27945618	27945704	.	-	.	Parent=Os08t0558400-01
Chr08	irgsp1_rep	three_prime_UTR	27945345	27945520	.	-	.	Parent=Os08t0558400-01
Chr08	irgsp1_rep	three_prime_UTR	27945075	27945236	.	-	.	Parent=Os08t0558400-01
Chr08	irgsp1_rep	three_prime_UTR	27944863	27944970	.	-	.	Parent=Os08t0558400-01
Chr08	irgsp1_rep	three_prime_UTR	27944609	27944767	.	-	.	Parent=Os08t0558400-01
Chr08	irgsp1_rep	three_prime_UTR	27944454	27944537	.	-	.	Parent=Os08t0558400-01
Chr08	irgsp1_rep	three_prime_UTR	27944087	27944292	.	-	.	Parent=Os08t0558400-01
Chr08	irgsp1_rep	three_prime_UTR	27943899	27944001	.	-	.	Parent=Os08t0558400-01
Chr08	irgsp1_rep	three_prime_UTR	27943536	27943644	.	-	.	Parent=Os08t0558400-01
Chr08	irgsp1_rep	three_prime_UTR	27943290	27943441	.	-	.	Parent=Os08t0558400-01
Chr08	irgsp1_rep	three_prime_UTR	27942709	27943192	.	-	.	Parent=Os08t0558400-01
Chr08	irgsp1_rep	mRNA	27942714	27945663	.	-	.	ID=Os08t0558400-02;Name=Os08t0558400-02;Locus_id=Os08g0558400;Note=Similar to cDNA clone:J023090L01%2C full insert sequence.;Transcript_evidence=AK060581 (DDBJ%2C Best hit);ORF_evidence=B7EJ91 (UniProt);NIAS_FLcDNA=001-023-H01;Expression=AK060581;TENOR=Os08t0558400-02;KEGG=Os08t0558400-02
Chr08	irgsp1_rep	five_prime_UTR	27945618	27945663	.	-	.	Parent=Os08t0558400-02
Chr08	irgsp1_rep	five_prime_UTR	27945345	27945520	.	-	.	Parent=Os08t0558400-02
Chr08	irgsp1_rep	five_prime_UTR	27945189	27945236	.	-	.	Parent=Os08t0558400-02
Chr08	irgsp1_rep	CDS	27945075	27945188	.	-	0	Parent=Os08t0558400-02
Chr08	irgsp1_rep	CDS	27944863	27944970	.	-	0	Parent=Os08t0558400-02
Chr08	irgsp1_rep	CDS	27944609	27944767	.	-	0	Parent=Os08t0558400-02
Chr08	irgsp1_rep	CDS	27944454	27944537	.	-	0	Parent=Os08t0558400-02
Chr08	irgsp1_rep	CDS	27944087	27944292	.	-	0	Parent=Os08t0558400-02
Chr08	irgsp1_rep	CDS	27943899	27944001	.	-	1	Parent=Os08t0558400-02
Chr08	irgsp1_rep	CDS	27943536	27943644	.	-	0	Parent=Os08t0558400-02
Chr08	irgsp1_rep	CDS	27943290	27943441	.	-	2	Parent=Os08t0558400-02
Chr08	irgsp1_rep	CDS	27942998	27943192	.	-	0	Parent=Os08t0558400-02
Chr08	irgsp1_rep	three_prime_UTR	27942714	27942997	.	-	.	Parent=Os08t0558400-02
Chr08	irgsp1_rep	mRNA	27956314	27958978	.	-	.	ID=Os08t0558600-01;Name=Os08t0558600-01;Locus_id=Os08g0558600;CGSNL Gene Symbol=VAMP727;CGSNL Gene Name=VESICLE-ASSOCIATED MEMBRANE PROTEIN 727;Oryzabase Gene Symbol Synonym(s)=OsVAMP727;Oryzabase Gene Name Synonym(s)=vesicle-associated membrane protein 727;Note=Synaptobrevin domain containing protein.;Transcript_evidence=AK066924 (DDBJ%2C Best hit);ORF_evidence=B4FK20 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: integral to membrane (GO:0016021);InterPro=Synaptobrevin (IPR001388),Longin (IPR010908),Longin-like (IPR011012);NIAS_FLcDNA=J013089D14;Oryzabase=23044;TENOR=Os08t0558600-01
Chr08	irgsp1_rep	five_prime_UTR	27958847	27958978	.	-	.	Parent=Os08t0558600-01
Chr08	irgsp1_rep	five_prime_UTR	27958457	27958509	.	-	.	Parent=Os08t0558600-01
Chr08	irgsp1_rep	CDS	27958261	27958456	.	-	0	Parent=Os08t0558600-01
Chr08	irgsp1_rep	CDS	27957952	27958153	.	-	2	Parent=Os08t0558600-01
Chr08	irgsp1_rep	CDS	27957732	27957852	.	-	1	Parent=Os08t0558600-01
Chr08	irgsp1_rep	CDS	27956818	27956880	.	-	0	Parent=Os08t0558600-01
Chr08	irgsp1_rep	CDS	27956588	27956731	.	-	0	Parent=Os08t0558600-01
Chr08	irgsp1_rep	three_prime_UTR	27956314	27956587	.	-	.	Parent=Os08t0558600-01
Chr08	irgsp1_rep	mRNA	27956314	27958937	.	-	.	ID=Os08t0558600-02;Name=Os08t0558600-02;Locus_id=Os08g0558600;CGSNL Gene Symbol=VAMP727;CGSNL Gene Name=VESICLE-ASSOCIATED MEMBRANE PROTEIN 727;Oryzabase Gene Symbol Synonym(s)=OsVAMP727;Oryzabase Gene Name Synonym(s)=vesicle-associated membrane protein 727;Note=Synaptobrevin domain containing protein.;Transcript_evidence=AK104800 (DDBJ%2C Best hit);ORF_evidence=B4FK20 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: integral to membrane (GO:0016021);InterPro=Synaptobrevin (IPR001388),Longin (IPR010908),Longin-like (IPR011012);NIAS_FLcDNA=001-040-A08;Oryzabase=23044;TENOR=Os08t0558600-02
Chr08	irgsp1_rep	five_prime_UTR	27958847	27958937	.	-	.	Parent=Os08t0558600-02
Chr08	irgsp1_rep	five_prime_UTR	27958457	27958509	.	-	.	Parent=Os08t0558600-02
Chr08	irgsp1_rep	CDS	27958261	27958456	.	-	0	Parent=Os08t0558600-02
Chr08	irgsp1_rep	CDS	27957952	27958153	.	-	2	Parent=Os08t0558600-02
Chr08	irgsp1_rep	CDS	27957732	27957852	.	-	1	Parent=Os08t0558600-02
Chr08	irgsp1_rep	CDS	27956818	27956880	.	-	0	Parent=Os08t0558600-02
Chr08	irgsp1_rep	CDS	27956588	27956731	.	-	0	Parent=Os08t0558600-02
Chr08	irgsp1_rep	three_prime_UTR	27956314	27956587	.	-	.	Parent=Os08t0558600-02
Chr08	irgsp1_rep	mRNA	27959500	27963022	.	-	.	ID=Os08t0558700-01;Name=Os08t0558700-01;Locus_id=Os08g0558700;Note=Similar to Multiple myeloma tumor-associated protein 2.;Transcript_evidence=AK103638 (DDBJ%2C Best hit);ORF_evidence=B6TFM2 (UniProt);InterPro=Kinase phosphorylation domain (IPR019315);NIAS_FLcDNA=J033134F18;Expression=AK103638;TENOR=Os08t0558700-01;KEGG=Os08t0558700-01
Chr08	irgsp1_rep	five_prime_UTR	27962938	27963022	.	-	.	Parent=Os08t0558700-01
Chr08	irgsp1_rep	CDS	27962895	27962937	.	-	0	Parent=Os08t0558700-01
Chr08	irgsp1_rep	CDS	27961260	27961349	.	-	2	Parent=Os08t0558700-01
Chr08	irgsp1_rep	CDS	27960114	27960375	.	-	2	Parent=Os08t0558700-01
Chr08	irgsp1_rep	CDS	27959660	27959969	.	-	1	Parent=Os08t0558700-01
Chr08	irgsp1_rep	three_prime_UTR	27959500	27959659	.	-	.	Parent=Os08t0558700-01
Chr08	irgsp1_rep	mRNA	27963204	27965477	.	+	.	ID=Os08t0558800-01;Name=Os08t0558800-01;Locus_id=Os08g0558800;Oryzabase Gene Symbol Synonym(s)=OsRPL10Ac1%2C OsL10a;Oryzabase Gene Name Synonym(s)=large ribosomal protein 10Ac1%2C 60S Ribosomal Protein L10a;Note=Similar to Ribosomal protein.;Transcript_evidence=AK122095 (DDBJ%2C Best hit);ORF_evidence=B8B9K6 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: large ribosomal subunit (GO:0015934),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L1 (IPR002143),Ribosomal protein L1%2C 2-layer alpha/beta-sandwich (IPR016094),Ribosomal protein L1%2C 3-layer alpha/beta-sandwich (IPR016095),Ribosomal protein L1%2C superfamily (IPR023674);NIAS_FLcDNA=J033125C22;Oryzabase=18095;TENOR=Os08t0558800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	27963204	27963270	.	+	.	Parent=Os08t0558800-01
Chr08	irgsp1_rep	CDS	27963271	27963275	.	+	0	Parent=Os08t0558800-01
Chr08	irgsp1_rep	CDS	27963653	27963872	.	+	1	Parent=Os08t0558800-01
Chr08	irgsp1_rep	CDS	27964242	27964411	.	+	0	Parent=Os08t0558800-01
Chr08	irgsp1_rep	CDS	27964849	27964927	.	+	1	Parent=Os08t0558800-01
Chr08	irgsp1_rep	three_prime_UTR	27964928	27965049	.	+	.	Parent=Os08t0558800-01
Chr08	irgsp1_rep	three_prime_UTR	27965209	27965477	.	+	.	Parent=Os08t0558800-01
Chr08	irgsp1_rep	mRNA	27963873	27965451	.	+	.	ID=Os08t0558800-02;Name=Os08t0558800-02;Locus_id=Os08g0558800;Oryzabase Gene Symbol Synonym(s)=OsRPL10Ac1%2C OsL10a;Oryzabase Gene Name Synonym(s)=large ribosomal protein 10Ac1%2C 60S Ribosomal Protein L10a;Note=Similar to Ribosomal protein.;Transcript_evidence=AK071249 (DDBJ%2C Best hit);ORF_evidence=B8B9K6 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: large ribosomal subunit (GO:0015934),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L1 (IPR002143),Ribosomal protein L1%2C 3-layer alpha/beta-sandwich (IPR016095),Ribosomal protein L1%2C superfamily (IPR023674);NIAS_FLcDNA=J023088C14;Oryzabase=18095;TENOR=Os08t0558800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	27963873	27964196	.	+	.	Parent=Os08t0558800-02
Chr08	irgsp1_rep	CDS	27964197	27964411	.	+	0	Parent=Os08t0558800-02
Chr08	irgsp1_rep	CDS	27964849	27964927	.	+	1	Parent=Os08t0558800-02
Chr08	irgsp1_rep	three_prime_UTR	27964928	27965049	.	+	.	Parent=Os08t0558800-02
Chr08	irgsp1_rep	three_prime_UTR	27965209	27965451	.	+	.	Parent=Os08t0558800-02
Chr08	irgsp1_rep	mRNA	27966196	27967934	.	+	.	ID=Os08t0558900-01;Name=Os08t0558900-01;Locus_id=Os08g0558900;Oryzabase Gene Symbol Synonym(s)=IF1-1;Oryzabase Gene Name Synonym(s)=F1F0-ATPase inhibitor protein 1-1;Note=Similar to F1F0-ATPase inhibitor protein.;Transcript_evidence=AK060402 (DDBJ%2C Best hit);ORF_evidence=Q9XIV2 (UniProt);GO=Biological Process: negative regulation of nucleotide metabolic process (GO:0045980),Cellular Component: mitochondrion (GO:0005739),Molecular Function: enzyme inhibitor activity (GO:0004857);InterPro=ATPase inhibitor%2C IATP%2C mitochondria (IPR007648);NIAS_FLcDNA=001-010-C04;Oryzabase=14491;Expression=AK060402;TENOR=Os08t0558900-01;KEGG=Os08t0558900-01
Chr08	irgsp1_rep	five_prime_UTR	27966196	27966305	.	+	.	Parent=Os08t0558900-01
Chr08	irgsp1_rep	CDS	27966306	27966458	.	+	0	Parent=Os08t0558900-01
Chr08	irgsp1_rep	CDS	27966586	27966678	.	+	0	Parent=Os08t0558900-01
Chr08	irgsp1_rep	CDS	27967730	27967753	.	+	0	Parent=Os08t0558900-01
Chr08	irgsp1_rep	three_prime_UTR	27967754	27967934	.	+	.	Parent=Os08t0558900-01
Chr08	irgsp1_rep	mRNA	27966244	27967928	.	+	.	ID=Os08t0558900-02;Name=Os08t0558900-02;Locus_id=Os08g0558900;Oryzabase Gene Symbol Synonym(s)=IF1-1;Oryzabase Gene Name Synonym(s)=F1F0-ATPase inhibitor protein 1-1;Note=Similar to F1F0-ATPase inhibitor protein.;Transcript_evidence=AK099200 (DDBJ%2C Best hit);ORF_evidence=Q9XIV2 (UniProt);GO=Biological Process: negative regulation of nucleotide metabolic process (GO:0045980),Cellular Component: mitochondrion (GO:0005739),Molecular Function: enzyme inhibitor activity (GO:0004857);InterPro=ATPase inhibitor%2C IATP%2C mitochondria (IPR007648);NIAS_FLcDNA=J023116D07;Oryzabase=14491;Expression=AK099200;TENOR=Os08t0558900-02;KEGG=Os08t0558900-02
Chr08	irgsp1_rep	five_prime_UTR	27966244	27966305	.	+	.	Parent=Os08t0558900-02
Chr08	irgsp1_rep	CDS	27966306	27966458	.	+	0	Parent=Os08t0558900-02
Chr08	irgsp1_rep	CDS	27966586	27966678	.	+	0	Parent=Os08t0558900-02
Chr08	irgsp1_rep	CDS	27967730	27967753	.	+	0	Parent=Os08t0558900-02
Chr08	irgsp1_rep	three_prime_UTR	27967754	27967928	.	+	.	Parent=Os08t0558900-02
Chr08	irgsp1_rep	mRNA	27968346	27970710	.	-	.	ID=Os08t0559000-01;Name=Os08t0559000-01;Locus_id=Os08g0559000;Note=Similar to F1F0-ATPase inhibitor protein.;Transcript_evidence=AK242369 (DDBJ%2C Best hit);ORF_evidence=Q9SXG0 (UniProt);NIAS_FLcDNA=J080035F09;TENOR=Os08t0559000-01;KEGG=Os08t0559000-01
Chr08	irgsp1_rep	five_prime_UTR	27970590	27970710	.	-	.	Parent=Os08t0559000-01
Chr08	irgsp1_rep	CDS	27970455	27970589	.	-	0	Parent=Os08t0559000-01
Chr08	irgsp1_rep	CDS	27969244	27969282	.	-	0	Parent=Os08t0559000-01
Chr08	irgsp1_rep	CDS	27968710	27968907	.	-	0	Parent=Os08t0559000-01
Chr08	irgsp1_rep	three_prime_UTR	27968346	27968709	.	-	.	Parent=Os08t0559000-01
Chr08	irgsp1_rep	mRNA	27973023	27974647	.	+	.	ID=Os08t0559200-01;Name=Os08t0559200-01;Locus_id=Os08g0559200;Oryzabase Gene Symbol Synonym(s)=RPS25%2C OsRPS25;Oryzabase Gene Name Synonym(s)=ribosomal protein S25%2C ribosomal protein small subunit 25;Note=Similar to Ribosomal protein S25 (40S ribosomal 25S subunit).;Transcript_evidence=AK059582 (DDBJ%2C Best hit),AK068626 (DDBJ%2C Best hit),AK099010 (DDBJ%2C Best hit);ORF_evidence=NP_001148017.1 (RefSeq);InterPro=Ribosomal protein S25 (IPR004977),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=001-030-B04,J013154N05,J013120F23;Oryzabase=22185;TENOR=Os08t0559200-01
Chr08	irgsp1_rep	five_prime_UTR	27973023	27973103	.	+	.	Parent=Os08t0559200-01
Chr08	irgsp1_rep	CDS	27973104	27973106	.	+	0	Parent=Os08t0559200-01
Chr08	irgsp1_rep	CDS	27973194	27973268	.	+	0	Parent=Os08t0559200-01
Chr08	irgsp1_rep	CDS	27973355	27973489	.	+	0	Parent=Os08t0559200-01
Chr08	irgsp1_rep	CDS	27974322	27974435	.	+	0	Parent=Os08t0559200-01
Chr08	irgsp1_rep	three_prime_UTR	27974436	27974647	.	+	.	Parent=Os08t0559200-01
Chr08	irgsp1_rep	mRNA	27991559	27999290	.	+	.	ID=Os08t0559300-01;Name=Os08t0559300-01;Locus_id=Os08g0559300;RAP-DB Gene Symbol Synonym(s)=SPY%2C OsSPY;RAP-DB Gene Name Synonym(s)=SPINDLY%2C Spindly%2C Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY;CGSNL Gene Symbol=SPY;CGSNL Gene Name=SPINDLY;Oryzabase Gene Symbol Synonym(s)=OsSPY;Oryzabase Gene Name Synonym(s)=Spindly%2C Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY;Note=O-linked N-acetylglucosamine transferase%2C Negative regulator of gibberellin (GA) signaling%2C Brassinosteroid (BR) synthesis;Transcript_evidence=AK065854;ORF_evidence=Q6YZI0;GO=Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide repeat-containing domain (IPR013026),Tetratricopeptide-like helical domain (IPR011990),O-GlcNAc transferase%2C C-terminal (IPR029489),Tetratricopeptide repeat (IPR019734),Sel1-like repeat (IPR006597),Tetratricopeptide repeat 1 (IPR001440);NIAS_FLcDNA=J013041I06;Manual Curation=January 29%2C 2016;Literature_PMID=17052323;Oryzabase=6296;Expression=AK065854;TENOR=Os08t0559300-01;KEGG=Os08t0559300-01
Chr08	irgsp1_rep	five_prime_UTR	27991559	27991844	.	+	.	Parent=Os08t0559300-01
Chr08	irgsp1_rep	five_prime_UTR	27992263	27992307	.	+	.	Parent=Os08t0559300-01
Chr08	irgsp1_rep	CDS	27992308	27992676	.	+	0	Parent=Os08t0559300-01
Chr08	irgsp1_rep	CDS	27993401	27993562	.	+	0	Parent=Os08t0559300-01
Chr08	irgsp1_rep	CDS	27993657	27993832	.	+	0	Parent=Os08t0559300-01
Chr08	irgsp1_rep	CDS	27993923	27993998	.	+	1	Parent=Os08t0559300-01
Chr08	irgsp1_rep	CDS	27994396	27994524	.	+	0	Parent=Os08t0559300-01
Chr08	irgsp1_rep	CDS	27994605	27994724	.	+	0	Parent=Os08t0559300-01
Chr08	irgsp1_rep	CDS	27994814	27994880	.	+	0	Parent=Os08t0559300-01
Chr08	irgsp1_rep	CDS	27994974	27995057	.	+	2	Parent=Os08t0559300-01
Chr08	irgsp1_rep	CDS	27995258	27995352	.	+	2	Parent=Os08t0559300-01
Chr08	irgsp1_rep	CDS	27995669	27995733	.	+	0	Parent=Os08t0559300-01
Chr08	irgsp1_rep	CDS	27995846	27996044	.	+	1	Parent=Os08t0559300-01
Chr08	irgsp1_rep	CDS	27996668	27996862	.	+	0	Parent=Os08t0559300-01
Chr08	irgsp1_rep	CDS	27997108	27997202	.	+	0	Parent=Os08t0559300-01
Chr08	irgsp1_rep	CDS	27997301	27997436	.	+	1	Parent=Os08t0559300-01
Chr08	irgsp1_rep	CDS	27997507	27997724	.	+	0	Parent=Os08t0559300-01
Chr08	irgsp1_rep	CDS	27997971	27998098	.	+	1	Parent=Os08t0559300-01
Chr08	irgsp1_rep	CDS	27998390	27998859	.	+	2	Parent=Os08t0559300-01
Chr08	irgsp1_rep	three_prime_UTR	27998860	27999290	.	+	.	Parent=Os08t0559300-01
Chr08	irgsp1_rep	mRNA	27999844	28002323	.	-	.	ID=Os08t0559400-01;Name=Os08t0559400-01;Locus_id=Os08g0559400;RAP-DB Gene Symbol Synonym(s)=OsCYP18-2;RAP-DB Gene Name Synonym(s)=Cyclophilin 18-2;CGSNL Gene Symbol=CYP18-2;CGSNL Gene Name=CYCLOPHILIN 18-2;Oryzabase Gene Symbol Synonym(s)=OsCYP18-2%2C OsCYP-23%2C OsCYP18-2a%2C OsCYP18-2b%2C OsCYP18-2c%2C SIP12;Oryzabase Gene Name Synonym(s)=cyclophilin 18-2%2C cyclophilin 23%2C SKIP interacting protein 12%2C SKIPa-interacting protein 12%2C SKIPa-interacting protein 12;Note=Homologue of human peptidyl-prolyl isomerase-like 1 (PPiL1)%2C Cyclophilin%2C Tolerance to drought stress;Transcript_evidence=AK072675;ORF_evidence=Q93VG0;GO=Biological Process: protein peptidyl-prolyl isomerization (GO:0000413),Biological Process: protein folding (GO:0006457),Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);InterPro=Cyclophilin-like domain superfamily (IPR029000),Cyclophilin-type peptidyl-prolyl cis-trans isomerase (IPR024936),Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain (IPR002130),Cyclophilin-type peptidyl-prolyl cis-trans isomerase%2C conserved site (IPR020892);NIAS_FLcDNA=J023135C15;Manual Curation=May 14%2C 2020;Literature_PMID=25847193;Oryzabase=10055;Expression=AK072675;TENOR=Os08t0559400-01;KEGG=Os08t0559400-01 (EC:5.2.1.8);Subcellular location=cytosol (GO:0005829), nucleus (GO:0005634)
Chr08	irgsp1_rep	five_prime_UTR	28002266	28002323	.	-	.	Parent=Os08t0559400-01
Chr08	irgsp1_rep	CDS	28002194	28002265	.	-	0	Parent=Os08t0559400-01
Chr08	irgsp1_rep	CDS	28001978	28002073	.	-	0	Parent=Os08t0559400-01
Chr08	irgsp1_rep	CDS	28001821	28001882	.	-	0	Parent=Os08t0559400-01
Chr08	irgsp1_rep	CDS	28001349	28001482	.	-	1	Parent=Os08t0559400-01
Chr08	irgsp1_rep	CDS	28000673	28000757	.	-	2	Parent=Os08t0559400-01
Chr08	irgsp1_rep	CDS	28000090	28000135	.	-	1	Parent=Os08t0559400-01
Chr08	irgsp1_rep	three_prime_UTR	27999844	28000089	.	-	.	Parent=Os08t0559400-01
Chr08	irgsp1_rep	mRNA	28002557	28003531	.	-	.	ID=Os08t0559501-00;Name=Os08t0559501-00;Locus_id=Os08g0559501;Note=Conserved hypothetical protein.;Transcript_evidence=CT837577 (DDBJ%2C Best hit);ORF_evidence=NP_001175701.1 (RefSeq);TENOR=Os08t0559501-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	28003495	28003531	.	-	.	Parent=Os08t0559501-00
Chr08	irgsp1_rep	CDS	28003426	28003494	.	-	0	Parent=Os08t0559501-00
Chr08	irgsp1_rep	CDS	28003264	28003281	.	-	0	Parent=Os08t0559501-00
Chr08	irgsp1_rep	three_prime_UTR	28002557	28003263	.	-	.	Parent=Os08t0559501-00
Chr08	irgsp1_rep	mRNA	28004856	28009273	.	+	.	ID=Os08t0559600-01;Name=Os08t0559600-01;Locus_id=Os08g0559600;Oryzabase Gene Symbol Synonym(s)=Dad;Oryzabase Gene Name Synonym(s)=dihydroxy-acid dehydratase;Note=Similar to Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD).;Transcript_evidence=AK103178 (DDBJ%2C Best hit),AK102083 (DDBJ%2C Best hit);ORF_evidence=D2DKF0 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: branched chain family amino acid biosynthetic process (GO:0009082),Molecular Function: catalytic activity (GO:0003824),Molecular Function: dihydroxy-acid dehydratase activity (GO:0004160);InterPro=Dihydroxy-acid/6-phosphogluconate dehydratase (IPR000581),Dihydroxy-acid dehydratase (IPR004404),Aconitase/3-isopropylmalate dehydratase%2C swivel (IPR015928),Dihydroxy-acid/6-phosphogluconate dehydratase%2C conserved site (IPR020558);NIAS_FLcDNA=J033121I10,J033082L10;Oryzabase=19687;Expression=AK103178;TENOR=Os08t0559600-01;KEGG=Os08t0559600-01 (EC:4.2.1.9)
Chr08	irgsp1_rep	five_prime_UTR	28004856	28004955	.	+	.	Parent=Os08t0559600-01
Chr08	irgsp1_rep	CDS	28004956	28005441	.	+	0	Parent=Os08t0559600-01
Chr08	irgsp1_rep	CDS	28005960	28006031	.	+	0	Parent=Os08t0559600-01
Chr08	irgsp1_rep	CDS	28006315	28006362	.	+	0	Parent=Os08t0559600-01
Chr08	irgsp1_rep	CDS	28006445	28006599	.	+	0	Parent=Os08t0559600-01
Chr08	irgsp1_rep	CDS	28006719	28006913	.	+	1	Parent=Os08t0559600-01
Chr08	irgsp1_rep	CDS	28006985	28007096	.	+	1	Parent=Os08t0559600-01
Chr08	irgsp1_rep	CDS	28007197	28007266	.	+	0	Parent=Os08t0559600-01
Chr08	irgsp1_rep	CDS	28007352	28007410	.	+	2	Parent=Os08t0559600-01
Chr08	irgsp1_rep	CDS	28007493	28007616	.	+	0	Parent=Os08t0559600-01
Chr08	irgsp1_rep	CDS	28007707	28007777	.	+	2	Parent=Os08t0559600-01
Chr08	irgsp1_rep	CDS	28008295	28008396	.	+	0	Parent=Os08t0559600-01
Chr08	irgsp1_rep	CDS	28008484	28008564	.	+	0	Parent=Os08t0559600-01
Chr08	irgsp1_rep	CDS	28008746	28008904	.	+	0	Parent=Os08t0559600-01
Chr08	irgsp1_rep	CDS	28008999	28009049	.	+	0	Parent=Os08t0559600-01
Chr08	irgsp1_rep	three_prime_UTR	28009050	28009273	.	+	.	Parent=Os08t0559600-01
Chr08	irgsp1_rep	mRNA	28004894	28009074	.	+	.	ID=Os08t0559600-02;Name=Os08t0559600-02;Locus_id=Os08g0559600;Oryzabase Gene Symbol Synonym(s)=Dad;Oryzabase Gene Name Synonym(s)=dihydroxy-acid dehydratase;Note=Similar to Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD).;Transcript_evidence=AK058527 (DDBJ%2C Best hit);ORF_evidence=D2DKF0 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: branched chain family amino acid biosynthetic process (GO:0009082),Molecular Function: catalytic activity (GO:0003824),Molecular Function: dihydroxy-acid dehydratase activity (GO:0004160);InterPro=Dihydroxy-acid/6-phosphogluconate dehydratase (IPR000581),Dihydroxy-acid dehydratase (IPR004404),Aconitase/3-isopropylmalate dehydratase%2C swivel (IPR015928),Dihydroxy-acid/6-phosphogluconate dehydratase%2C conserved site (IPR020558);NIAS_FLcDNA=001-017-A03;Oryzabase=19687;Expression=AK058527;TENOR=Os08t0559600-02;KEGG=Os08t0559600-02 (EC:4.2.1.9)
Chr08	irgsp1_rep	five_prime_UTR	28004894	28004955	.	+	.	Parent=Os08t0559600-02
Chr08	irgsp1_rep	CDS	28004956	28005441	.	+	0	Parent=Os08t0559600-02
Chr08	irgsp1_rep	CDS	28005960	28006031	.	+	0	Parent=Os08t0559600-02
Chr08	irgsp1_rep	CDS	28006315	28006362	.	+	0	Parent=Os08t0559600-02
Chr08	irgsp1_rep	CDS	28006445	28006599	.	+	0	Parent=Os08t0559600-02
Chr08	irgsp1_rep	CDS	28006719	28006913	.	+	1	Parent=Os08t0559600-02
Chr08	irgsp1_rep	CDS	28006985	28007096	.	+	1	Parent=Os08t0559600-02
Chr08	irgsp1_rep	CDS	28007197	28007266	.	+	0	Parent=Os08t0559600-02
Chr08	irgsp1_rep	CDS	28007352	28007410	.	+	2	Parent=Os08t0559600-02
Chr08	irgsp1_rep	CDS	28007493	28007616	.	+	0	Parent=Os08t0559600-02
Chr08	irgsp1_rep	CDS	28007707	28007777	.	+	2	Parent=Os08t0559600-02
Chr08	irgsp1_rep	CDS	28008295	28008396	.	+	0	Parent=Os08t0559600-02
Chr08	irgsp1_rep	CDS	28008484	28008564	.	+	0	Parent=Os08t0559600-02
Chr08	irgsp1_rep	CDS	28008746	28008904	.	+	0	Parent=Os08t0559600-02
Chr08	irgsp1_rep	CDS	28008999	28009049	.	+	0	Parent=Os08t0559600-02
Chr08	irgsp1_rep	three_prime_UTR	28009050	28009074	.	+	.	Parent=Os08t0559600-02
Chr08	irgsp1_rep	mRNA	28009655	28010639	.	+	.	ID=Os08t0559700-00;Name=Os08t0559700-00;Locus_id=Os08g0559700;Note=Protein of unknown function DUF3245 domain containing protein.;Transcript_evidence=AK250759 (DDBJ);ORF_evidence=NP_001062504.1 (RefSeq);InterPro=Protein of unknown function DUF3245 (IPR021641);TENOR=Os08t0559700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	28009655	28009961	.	+	.	Parent=Os08t0559700-00
Chr08	irgsp1_rep	CDS	28009962	28010221	.	+	0	Parent=Os08t0559700-00
Chr08	irgsp1_rep	CDS	28010316	28010568	.	+	1	Parent=Os08t0559700-00
Chr08	irgsp1_rep	three_prime_UTR	28010569	28010639	.	+	.	Parent=Os08t0559700-00
Chr08	irgsp1_rep	mRNA	28011060	28013318	.	-	.	ID=Os08t0559800-01;Name=Os08t0559800-01;Locus_id=Os08g0559800;Note=Hypothetical conserved gene.;Transcript_evidence=AK242197 (DDBJ%2C Best hit);ORF_evidence=B9FYJ9 (UniProt);NIAS_FLcDNA=J075165N24;TENOR=Os08t0559800-01;KEGG=Os08t0559800-01
Chr08	irgsp1_rep	CDS	28012767	28013318	.	-	0	Parent=Os08t0559800-01
Chr08	irgsp1_rep	CDS	28012402	28012478	.	-	0	Parent=Os08t0559800-01
Chr08	irgsp1_rep	CDS	28012175	28012286	.	-	1	Parent=Os08t0559800-01
Chr08	irgsp1_rep	CDS	28011972	28012088	.	-	0	Parent=Os08t0559800-01
Chr08	irgsp1_rep	CDS	28011302	28011676	.	-	0	Parent=Os08t0559800-01
Chr08	irgsp1_rep	three_prime_UTR	28011060	28011301	.	-	.	Parent=Os08t0559800-01
Chr08	irgsp1_rep	mRNA	28014059	28019958	.	+	.	ID=Os08t0559900-01;Name=Os08t0559900-01;Locus_id=Os08g0559900;CGSNL Gene Symbol=NTP9;CGSNL Gene Name=NUCLEOTIDYL TRANSFERASE PROTEIN 9;Oryzabase Gene Symbol Synonym(s)=OsNTP9;Oryzabase Gene Name Synonym(s)=nucleotidyl transferase protein 9;Note=PAP/25A core domain containing protein.;Transcript_evidence=AK065627 (DDBJ%2C Best hit);ORF_evidence=B8B9L0 (UniProt);GO=Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=Nucleotidyl transferase domain (IPR002934);NIAS_FLcDNA=J013028H07;Oryzabase=21892;Expression=AK065627;TENOR=Os08t0559900-01;KEGG=Os08t0559900-01 (EC:2.7.7.52)
Chr08	irgsp1_rep	five_prime_UTR	28014059	28014114	.	+	.	Parent=Os08t0559900-01
Chr08	irgsp1_rep	CDS	28014115	28014185	.	+	0	Parent=Os08t0559900-01
Chr08	irgsp1_rep	CDS	28014520	28014554	.	+	1	Parent=Os08t0559900-01
Chr08	irgsp1_rep	CDS	28015184	28015372	.	+	2	Parent=Os08t0559900-01
Chr08	irgsp1_rep	CDS	28016025	28016204	.	+	2	Parent=Os08t0559900-01
Chr08	irgsp1_rep	CDS	28016532	28016716	.	+	2	Parent=Os08t0559900-01
Chr08	irgsp1_rep	CDS	28016835	28016930	.	+	0	Parent=Os08t0559900-01
Chr08	irgsp1_rep	CDS	28017130	28017175	.	+	0	Parent=Os08t0559900-01
Chr08	irgsp1_rep	CDS	28017296	28017402	.	+	2	Parent=Os08t0559900-01
Chr08	irgsp1_rep	CDS	28018135	28018236	.	+	0	Parent=Os08t0559900-01
Chr08	irgsp1_rep	CDS	28018322	28019056	.	+	0	Parent=Os08t0559900-01
Chr08	irgsp1_rep	three_prime_UTR	28019057	28019958	.	+	.	Parent=Os08t0559900-01
Chr08	irgsp1_rep	mRNA	28043209	28045010	.	+	.	ID=Os08t0560000-01;Name=Os08t0560000-01;Locus_id=Os08g0560000;RAP-DB Gene Symbol Synonym(s)=SLC1%2C OsGA20ox7;RAP-DB Gene Name Synonym(s)=slender and crinkly leaf 1;CGSNL Gene Symbol=SLC1;CGSNL Gene Name=SLENDER AND CRINKLY LEAF 1;Oryzabase Gene Symbol Synonym(s)=OsSLC1%2C GA20OX7%2C OsGA20ox7%2C ga20ox7%2C 2-ODD4%2C Os2-ODD4%2C 2ODD4%2C Os2ODD4;Oryzabase Gene Name Synonym(s)=rice GA 20-oxidase7%2C GA 20-oxidase 7%2C gibberellin C-20 oxidase 7%2C Gibberellin-20 oxidase 7%2C 2-oxoglutarate-dependent dioxygenase 4;Note=2-oxoglutarate-dependent dioxygenase%2C Gibberellin 20 oxidase%2C Shoot development%2C Salicylic acid (SA) production%2C Phytohormone homeostasis;Transcript_evidence=AK107117,AK107230;ORF_evidence=Q6YYX9;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Isopenicillin N synthase-like (IPR027443),Non-haem dioxygenase N-terminal domain (IPR026992),Oxoglutarate/iron-dependent dioxygenase (IPR005123);NIAS_FLcDNA=002-124-A12,002-125-E03;Manual Curation=November 12%2C 2019;Literature_PMID=31701152;Oryzabase=20418;TENOR=Os08t0560000-01;Subcellular location=cytoplasm (GO:0005737), nucleus (GO:0005634)
Chr08	irgsp1_rep	five_prime_UTR	28043209	28043366	.	+	.	Parent=Os08t0560000-01
Chr08	irgsp1_rep	CDS	28043367	28044272	.	+	0	Parent=Os08t0560000-01
Chr08	irgsp1_rep	CDS	28044653	28044898	.	+	0	Parent=Os08t0560000-01
Chr08	irgsp1_rep	three_prime_UTR	28044899	28045010	.	+	.	Parent=Os08t0560000-01
Chr08	irgsp1_rep	mRNA	28059345	28061198	.	-	.	ID=Os08t0560300-01;Name=Os08t0560300-01;Locus_id=Os08g0560300;Note=Protein of unknown function DUF597 family protein.;Transcript_evidence=AK060208 (DDBJ%2C Best hit);ORF_evidence=A2YY49 (UniProt);InterPro=Protein of unknown function DUF597 (IPR006734);NIAS_FLcDNA=001-002-B01;Expression=AK060208;TENOR=Os08t0560300-01;KEGG=Os08t0560300-01
Chr08	irgsp1_rep	five_prime_UTR	28061088	28061198	.	-	.	Parent=Os08t0560300-01
Chr08	irgsp1_rep	CDS	28060884	28061087	.	-	0	Parent=Os08t0560300-01
Chr08	irgsp1_rep	CDS	28060585	28060821	.	-	0	Parent=Os08t0560300-01
Chr08	irgsp1_rep	CDS	28060169	28060330	.	-	0	Parent=Os08t0560300-01
Chr08	irgsp1_rep	three_prime_UTR	28059345	28060168	.	-	.	Parent=Os08t0560300-01
Chr08	irgsp1_rep	mRNA	28060583	28061157	.	+	.	ID=Os08t0560401-00;Name=Os08t0560401-00;Locus_id=Os08g0560401;Note=Hypothetical gene.;Transcript_evidence=tplb0006k21 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0560401-00;KEGG=Os08t0560401-00
Chr08	irgsp1_rep	five_prime_UTR	28060583	28060817	.	+	.	Parent=Os08t0560401-00
Chr08	irgsp1_rep	five_prime_UTR	28060872	28060874	.	+	.	Parent=Os08t0560401-00
Chr08	irgsp1_rep	CDS	28060875	28061093	.	+	0	Parent=Os08t0560401-00
Chr08	irgsp1_rep	three_prime_UTR	28061094	28061157	.	+	.	Parent=Os08t0560401-00
Chr08	irgsp1_rep	mRNA	28069300	28074610	.	+	.	ID=Os08t0560500-01;Name=Os08t0560500-01;Locus_id=Os08g0560500;CGSNL Gene Symbol=SCP41;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 41;Oryzabase Gene Symbol Synonym(s)=OsSCP41;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 41;Note=Peptidase S10%2C serine carboxypeptidase family protein.;Transcript_evidence=AK101389 (DDBJ%2C Best hit),AK119519 (DDBJ%2C Best hit);ORF_evidence=NP_001148149.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=J033036J23,001-202-C12;Oryzabase=19220;Expression=AK101389;TENOR=Os08t0560500-01;KEGG=Os08t0560500-01 (EC:3.4.16.-)
Chr08	irgsp1_rep	five_prime_UTR	28069300	28069391	.	+	.	Parent=Os08t0560500-01
Chr08	irgsp1_rep	CDS	28069392	28069536	.	+	0	Parent=Os08t0560500-01
Chr08	irgsp1_rep	CDS	28069690	28069787	.	+	2	Parent=Os08t0560500-01
Chr08	irgsp1_rep	CDS	28070085	28070192	.	+	0	Parent=Os08t0560500-01
Chr08	irgsp1_rep	CDS	28070337	28070586	.	+	0	Parent=Os08t0560500-01
Chr08	irgsp1_rep	CDS	28070727	28070770	.	+	2	Parent=Os08t0560500-01
Chr08	irgsp1_rep	CDS	28071423	28071490	.	+	0	Parent=Os08t0560500-01
Chr08	irgsp1_rep	CDS	28071929	28072034	.	+	1	Parent=Os08t0560500-01
Chr08	irgsp1_rep	CDS	28072119	28072324	.	+	0	Parent=Os08t0560500-01
Chr08	irgsp1_rep	CDS	28072563	28072683	.	+	1	Parent=Os08t0560500-01
Chr08	irgsp1_rep	CDS	28073544	28073596	.	+	0	Parent=Os08t0560500-01
Chr08	irgsp1_rep	CDS	28073719	28073857	.	+	1	Parent=Os08t0560500-01
Chr08	irgsp1_rep	CDS	28074298	28074366	.	+	0	Parent=Os08t0560500-01
Chr08	irgsp1_rep	three_prime_UTR	28074367	28074610	.	+	.	Parent=Os08t0560500-01
Chr08	irgsp1_rep	mRNA	28074888	28077106	.	-	.	ID=Os08t0560600-01;Name=Os08t0560600-01;Locus_id=Os08g0560600;Note=Similar to nucleobase:cation symporter.;Transcript_evidence=AK109222 (DDBJ%2C Best hit);ORF_evidence=NP_568123.1 (RefSeq);InterPro=DnaJ homologue%2C subfamily C%2C member 28%2C conserved domain (IPR018961);NIAS_FLcDNA=002-156-E06;Expression=AK109222;TENOR=Os08t0560600-01;KEGG=Os08t0560600-01
Chr08	irgsp1_rep	CDS	28076874	28077106	.	-	0	Parent=Os08t0560600-01
Chr08	irgsp1_rep	CDS	28075391	28075721	.	-	1	Parent=Os08t0560600-01
Chr08	irgsp1_rep	CDS	28075214	28075300	.	-	0	Parent=Os08t0560600-01
Chr08	irgsp1_rep	three_prime_UTR	28074888	28075213	.	-	.	Parent=Os08t0560600-01
Chr08	irgsp1_rep	mRNA	28077380	28078024	.	+	.	ID=Os08t0560700-01;Name=Os08t0560700-01;Locus_id=Os08g0560700;Note=Similar to Polcalcin Phl p 7 (Calcium-binding pollen allergen Phl p 7) (P7).;Transcript_evidence=AK121445 (DDBJ%2C Best hit);ORF_evidence=O82040 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J023141E01;Expression=AK121445;TENOR=Os08t0560700-01;KEGG=Os08t0560700-01
Chr08	irgsp1_rep	five_prime_UTR	28077380	28077527	.	+	.	Parent=Os08t0560700-01
Chr08	irgsp1_rep	CDS	28077528	28077776	.	+	0	Parent=Os08t0560700-01
Chr08	irgsp1_rep	three_prime_UTR	28077777	28078024	.	+	.	Parent=Os08t0560700-01
Chr08	irgsp1_rep	mRNA	28081877	28082651	.	+	.	ID=Os08t0560800-00;Name=Os08t0560800-00;Locus_id=Os08g0560800;Note=Similar to Calreticulin-like protein (Fragment).;Transcript_evidence=AF325720 (DDBJ);ORF_evidence=Q9ATP1 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calreticulin/calnexin (IPR001580);TENOR=Os08t0560800-00;KEGG=Os08t0560800-00
Chr08	irgsp1_rep	five_prime_UTR	28081877	28081943	.	+	.	Parent=Os08t0560800-00
Chr08	irgsp1_rep	CDS	28081944	28081952	.	+	0	Parent=Os08t0560800-00
Chr08	irgsp1_rep	CDS	28082033	28082128	.	+	0	Parent=Os08t0560800-00
Chr08	irgsp1_rep	CDS	28082218	28082265	.	+	0	Parent=Os08t0560800-00
Chr08	irgsp1_rep	CDS	28082472	28082507	.	+	0	Parent=Os08t0560800-00
Chr08	irgsp1_rep	three_prime_UTR	28082508	28082651	.	+	.	Parent=Os08t0560800-00
Chr08	irgsp1_rep	mRNA	28083388	28084239	.	-	.	ID=Os08t0560900-01;Name=Os08t0560900-01;Locus_id=Os08g0560900;CGSNL Gene Symbol=PSAD;CGSNL Gene Name=PHOTOSYSTEM I SUBUNIT;Oryzabase Gene Symbol Synonym(s)=PsaD%2C OsPsaD;Oryzabase Gene Name Synonym(s)=PSI subunit PsaD%2C photosystem I subunit PsaD%2C PSI subunit D;Note=Similar to Photosystem I reaction center subunit II%2C chloroplast precursor (Photosystem I 20 kDa subunit) (PSI-D).;Transcript_evidence=AK120372 (DDBJ%2C Best hit);ORF_evidence=P36213 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem I (GO:0009522),Cellular Component: photosystem I reaction center (GO:0009538);InterPro=Photosystem I PsaD (IPR003685);NIAS_FLcDNA=J013070L10;Oryzabase=9586;Expression=AK120372;TENOR=Os08t0560900-01;KEGG=Os08t0560900-01
Chr08	irgsp1_rep	five_prime_UTR	28084174	28084239	.	-	.	Parent=Os08t0560900-01
Chr08	irgsp1_rep	CDS	28083562	28084173	.	-	0	Parent=Os08t0560900-01
Chr08	irgsp1_rep	three_prime_UTR	28083388	28083561	.	-	.	Parent=Os08t0560900-01
Chr08	irgsp1_rep	mRNA	28083386	28084216	.	-	.	ID=Os08t0560900-02;Name=Os08t0560900-02;Locus_id=Os08g0560900;CGSNL Gene Symbol=PSAD;CGSNL Gene Name=PHOTOSYSTEM I SUBUNIT;Oryzabase Gene Symbol Synonym(s)=PsaD%2C OsPsaD;Oryzabase Gene Name Synonym(s)=PSI subunit PsaD%2C photosystem I subunit PsaD%2C PSI subunit D;Note=Similar to Photosystem I reaction center subunit II%2C chloroplast precursor (Photosystem I 20 kDa subunit) (PSI-D).;Transcript_evidence=AK061775 (DDBJ%2C Best hit);ORF_evidence=P36213 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem I (GO:0009522),Cellular Component: photosystem I reaction center (GO:0009538);InterPro=Photosystem I PsaD (IPR003685);NIAS_FLcDNA=001-039-D04;Oryzabase=9586;Expression=AK061775;TENOR=Os08t0560900-02;KEGG=Os08t0560900-02
Chr08	irgsp1_rep	five_prime_UTR	28084174	28084216	.	-	.	Parent=Os08t0560900-02
Chr08	irgsp1_rep	CDS	28083562	28084173	.	-	0	Parent=Os08t0560900-02
Chr08	irgsp1_rep	three_prime_UTR	28083386	28083561	.	-	.	Parent=Os08t0560900-02
Chr08	irgsp1_rep	mRNA	28083411	28083805	.	-	.	ID=Os08t0560900-03;Name=Os08t0560900-03;Locus_id=Os08g0560900;CGSNL Gene Symbol=PSAD;CGSNL Gene Name=PHOTOSYSTEM I SUBUNIT;Oryzabase Gene Symbol Synonym(s)=PsaD%2C OsPsaD;Oryzabase Gene Name Synonym(s)=PSI subunit PsaD%2C photosystem I subunit PsaD%2C PSI subunit D;Note=Similar to Photosystem I reaction center subunit II%2C chloroplastic.;Transcript_evidence=AK120366 (DDBJ%2C Best hit);ORF_evidence=P29302 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem I (GO:0009522),Cellular Component: photosystem I reaction center (GO:0009538);InterPro=Photosystem I PsaD (IPR003685);NIAS_FLcDNA=J013069H06;Oryzabase=9586;Expression=AK120366;TENOR=Os08t0560900-03;KEGG=Os08t0560900-03
Chr08	irgsp1_rep	five_prime_UTR	28083805	28083805	.	-	.	Parent=Os08t0560900-03
Chr08	irgsp1_rep	CDS	28083562	28083804	.	-	0	Parent=Os08t0560900-03
Chr08	irgsp1_rep	three_prime_UTR	28083411	28083561	.	-	.	Parent=Os08t0560900-03
Chr08	irgsp1_rep	mRNA	28084607	28086381	.	+	.	ID=Os08t0561000-00;Name=Os08t0561000-00;Locus_id=Os08g0561000;CGSNL Gene Symbol=MSL32;CGSNL Gene Name=MYB/SANT-LIKE 32;Oryzabase Gene Symbol Synonym(s)=OsMSL32;Oryzabase Gene Name Synonym(s)=Myb/SANT-LIKE 32;Note=Hypothetical conserved gene.;Transcript_evidence=AK064584 (DDBJ%2C Secondary hit);ORF_evidence=Q6YYW9 (UniProt);InterPro=MYB-like (IPR017877);Oryzabase=22966;Expression=AK064584;TENOR=Os08t0561000-00;KEGG=Os08t0561000-00
Chr08	irgsp1_rep	five_prime_UTR	28084607	28085296	.	+	.	Parent=Os08t0561000-00
Chr08	irgsp1_rep	CDS	28085297	28086208	.	+	0	Parent=Os08t0561000-00
Chr08	irgsp1_rep	three_prime_UTR	28086209	28086381	.	+	.	Parent=Os08t0561000-00
Chr08	irgsp1_rep	mRNA	28103052	28103484	.	-	.	ID=Os08t0561250-00;Name=Os08t0561250-00;Locus_id=Os08g0561250;Note=Hypothetical protein.;Transcript_evidence=EU976224 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0561250-00
Chr08	irgsp1_rep	five_prime_UTR	28103434	28103484	.	-	.	Parent=Os08t0561250-00
Chr08	irgsp1_rep	CDS	28103052	28103433	.	-	0	Parent=Os08t0561250-00
Chr08	irgsp1_rep	mRNA	28118732	28121568	.	+	.	ID=Os08t0561500-01;Name=Os08t0561500-01;Locus_id=Os08g0561500;CGSNL Gene Symbol=UMAMIT12;CGSNL Gene Name=USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 12;Oryzabase Gene Symbol Synonym(s)=OsUMAMIT12;Oryzabase Gene Name Synonym(s)=Usually Multiple Acids Move In and out Transporter 12;Note=Similar to nodulin-like protein 5NG4.;Transcript_evidence=AK071683 (DDBJ%2C Best hit),AK099177 (DDBJ%2C Best hit);ORF_evidence=NP_001150116.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=J023109M16,J023096J12;Oryzabase=21380;TENOR=Os08t0561500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	28118732	28118863	.	+	.	Parent=Os08t0561500-01
Chr08	irgsp1_rep	CDS	28118864	28119075	.	+	0	Parent=Os08t0561500-01
Chr08	irgsp1_rep	CDS	28119221	28119809	.	+	1	Parent=Os08t0561500-01
Chr08	irgsp1_rep	CDS	28120902	28121264	.	+	0	Parent=Os08t0561500-01
Chr08	irgsp1_rep	three_prime_UTR	28121265	28121568	.	+	.	Parent=Os08t0561500-01
Chr08	irgsp1_rep	mRNA	28118867	28121117	.	-	.	ID=Os08t0561550-00;Name=Os08t0561550-00;Locus_id=Os08g0561550;Note=Hypothetical protein.;Transcript_evidence=tplb0040p04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0561550-00
Chr08	irgsp1_rep	CDS	28120902	28121117	.	-	0	Parent=Os08t0561550-00
Chr08	irgsp1_rep	CDS	28119693	28119809	.	-	0	Parent=Os08t0561550-00
Chr08	irgsp1_rep	three_prime_UTR	28119204	28119692	.	-	.	Parent=Os08t0561550-00
Chr08	irgsp1_rep	three_prime_UTR	28118867	28119060	.	-	.	Parent=Os08t0561550-00
Chr08	irgsp1_rep	mRNA	28123306	28126259	.	-	.	ID=Os08t0561600-01;Name=Os08t0561600-01;Locus_id=Os08g0561600;Oryzabase Gene Symbol Synonym(s)=OsDSR6;Oryzabase Gene Name Synonym(s)=DUF966-stress repressive gene 6;Note=Protein of unknown function DUF966 family protein.;Transcript_evidence=AK066884 (DDBJ%2C Best hit);ORF_evidence=B9EZ47 (UniProt);InterPro=Protein of unknown function DUF966 (IPR010369),Uncharacterised conserved protein UCP031043 (IPR021182);NIAS_FLcDNA=J013088D19;Oryzabase=15443;Expression=AK066884;TENOR=Os08t0561600-01;KEGG=Os08t0561600-01
Chr08	irgsp1_rep	five_prime_UTR	28126086	28126259	.	-	.	Parent=Os08t0561600-01
Chr08	irgsp1_rep	CDS	28125848	28126085	.	-	0	Parent=Os08t0561600-01
Chr08	irgsp1_rep	CDS	28125685	28125754	.	-	2	Parent=Os08t0561600-01
Chr08	irgsp1_rep	CDS	28125487	28125605	.	-	1	Parent=Os08t0561600-01
Chr08	irgsp1_rep	CDS	28124421	28125396	.	-	2	Parent=Os08t0561600-01
Chr08	irgsp1_rep	CDS	28123641	28123945	.	-	1	Parent=Os08t0561600-01
Chr08	irgsp1_rep	CDS	28123529	28123554	.	-	2	Parent=Os08t0561600-01
Chr08	irgsp1_rep	three_prime_UTR	28123306	28123528	.	-	.	Parent=Os08t0561600-01
Chr08	irgsp1_rep	mRNA	28124124	28126252	.	-	.	ID=Os08t0561600-02;Name=Os08t0561600-02;Locus_id=Os08g0561600;Oryzabase Gene Symbol Synonym(s)=OsDSR6;Oryzabase Gene Name Synonym(s)=DUF966-stress repressive gene 6;Note=Hypothetical conserved gene.;Transcript_evidence=AK107073 (DDBJ%2C Best hit);ORF_evidence=Q6YYY6 (UniProt);InterPro=Protein of unknown function DUF966 (IPR010369),Uncharacterised conserved protein UCP031043 (IPR021182);NIAS_FLcDNA=002-121-F01;Oryzabase=15443;Expression=AK107073;TENOR=Os08t0561600-02;KEGG=Os08t0561600-02
Chr08	irgsp1_rep	five_prime_UTR	28126086	28126252	.	-	.	Parent=Os08t0561600-02
Chr08	irgsp1_rep	CDS	28125685	28126085	.	-	0	Parent=Os08t0561600-02
Chr08	irgsp1_rep	CDS	28125487	28125602	.	-	1	Parent=Os08t0561600-02
Chr08	irgsp1_rep	CDS	28124405	28125396	.	-	2	Parent=Os08t0561600-02
Chr08	irgsp1_rep	three_prime_UTR	28124124	28124404	.	-	.	Parent=Os08t0561600-02
Chr08	irgsp1_rep	mRNA	28132469	28135505	.	+	.	ID=Os08t0561700-01;Name=Os08t0561700-01;Locus_id=Os08g0561700;CGSNL Gene Symbol=SOD4;CGSNL Gene Name=SUPEROXIDE DISMUTASE 4;Oryzabase Gene Symbol Synonym(s)=OsSOD4%2C OsCSD4%2C OsCu/Zn-SOD1%2C Cu/Zn-SOD1%2C OsCSD2%2C CSD2%2C OsSOD4-Cu/Zn%2C SOD4-Cu/Zn%2C Cu/ZnSOD3%2C CuZnSOD3%2C sodCp%2C OssodCp;Oryzabase Gene Name Synonym(s)=superoxide dismutase 4%2C Cu-dependent SOD 2;Note=Similar to Superoxide dismutase.;Transcript_evidence=AK059841 (DDBJ%2C Best hit),AK068627 (DDBJ%2C Best hit),AK104013 (DDBJ%2C Best hit),AK104240 (DDBJ%2C Best hit);ORF_evidence=A2YY59 (UniProt);GO=Biological Process: superoxide metabolic process (GO:0006801),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: superoxide dismutase activity (GO:0004784),Molecular Function: metal ion binding (GO:0046872);InterPro=Superoxide dismutase%2C copper/zinc binding domain (IPR001424),Superoxide dismutase%2C copper/zinc%2C binding site (IPR018152),Superoxide dismutase (Cu/Zn) / chaperones (IPR024134);NIAS_FLcDNA=006-206-D10,J013154J21,001-007-E03,006-308-B03;Oryzabase=11522;TENOR=Os08t0561700-01
Chr08	irgsp1_rep	five_prime_UTR	28132469	28132548	.	+	.	Parent=Os08t0561700-01
Chr08	irgsp1_rep	CDS	28132549	28132798	.	+	0	Parent=Os08t0561700-01
Chr08	irgsp1_rep	CDS	28133228	28133289	.	+	2	Parent=Os08t0561700-01
Chr08	irgsp1_rep	CDS	28133402	28133441	.	+	0	Parent=Os08t0561700-01
Chr08	irgsp1_rep	CDS	28134176	28134271	.	+	2	Parent=Os08t0561700-01
Chr08	irgsp1_rep	CDS	28134380	28134411	.	+	2	Parent=Os08t0561700-01
Chr08	irgsp1_rep	CDS	28134516	28134591	.	+	0	Parent=Os08t0561700-01
Chr08	irgsp1_rep	CDS	28134672	28134725	.	+	2	Parent=Os08t0561700-01
Chr08	irgsp1_rep	CDS	28135158	28135183	.	+	2	Parent=Os08t0561700-01
Chr08	irgsp1_rep	three_prime_UTR	28135184	28135505	.	+	.	Parent=Os08t0561700-01
Chr08	irgsp1_rep	mRNA	28135572	28137264	.	+	.	ID=Os08t0561800-01;Name=Os08t0561800-01;Locus_id=Os08g0561800;Note=Similar to Mov34/MPN/PAD-1 family protein.;Transcript_evidence=AK119834 (DDBJ%2C Best hit);ORF_evidence=Q53RR0 (UniProt);NIAS_FLcDNA=002-178-A09;TENOR=Os08t0561800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	28135572	28136321	.	+	.	Parent=Os08t0561800-01
Chr08	irgsp1_rep	CDS	28136322	28136804	.	+	0	Parent=Os08t0561800-01
Chr08	irgsp1_rep	three_prime_UTR	28136805	28137264	.	+	.	Parent=Os08t0561800-01
Chr08	irgsp1_rep	mRNA	28137549	28138710	.	+	.	ID=Os08t0561900-01;Name=Os08t0561900-01;Locus_id=Os08g0561900;CGSNL Gene Symbol=EXPA32;CGSNL Gene Name=ALPHA-EXPANSIN 32;Oryzabase Gene Symbol Synonym(s)=OsEXPA32;Oryzabase Gene Name Synonym(s)=expansin A32;Note=Similar to Alpha expansin 26.;Transcript_evidence=AK070505 (DDBJ%2C Best hit);ORF_evidence=Q6YYW5 (UniProt);GO=Biological Process: plant-type cell wall organization (GO:0009664),Cellular Component: extracellular region (GO:0005576);InterPro=Expansin (IPR002963),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);NIAS_FLcDNA=J023052B04;Oryzabase=21717;Expression=AK070505;TENOR=Os08t0561900-01;KEGG=Os08t0561900-01
Chr08	irgsp1_rep	five_prime_UTR	28137549	28137626	.	+	.	Parent=Os08t0561900-01
Chr08	irgsp1_rep	CDS	28137627	28138123	.	+	0	Parent=Os08t0561900-01
Chr08	irgsp1_rep	CDS	28138199	28138511	.	+	1	Parent=Os08t0561900-01
Chr08	irgsp1_rep	three_prime_UTR	28138512	28138710	.	+	.	Parent=Os08t0561900-01
Chr08	irgsp1_rep	mRNA	28137845	28138485	.	-	.	ID=Os08t0561950-00;Name=Os08t0561950-00;Locus_id=Os08g0561950;Note=Hypothetical protein.;Transcript_evidence=BT016845 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0561950-00
Chr08	irgsp1_rep	five_prime_UTR	28138484	28138485	.	-	.	Parent=Os08t0561950-00
Chr08	irgsp1_rep	CDS	28138235	28138483	.	-	0	Parent=Os08t0561950-00
Chr08	irgsp1_rep	CDS	28138130	28138156	.	-	0	Parent=Os08t0561950-00
Chr08	irgsp1_rep	three_prime_UTR	28137845	28138129	.	-	.	Parent=Os08t0561950-00
Chr08	irgsp1_rep	mRNA	28141176	28144882	.	+	.	ID=Os08t0562100-01;Name=Os08t0562100-01;Locus_id=Os08g0562100;Note=Similar to Sorghum chloroplast CM3 malate dehydrogenase (NADP) (Fragment).;Transcript_evidence=AK105935 (DDBJ%2C Best hit),AK102598 (DDBJ%2C Best hit);ORF_evidence=B6STI6 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: malate metabolic process (GO:0006108),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: malate dehydrogenase activity (GO:0016615),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: malate dehydrogenase (NADP+) activity (GO:0046554);InterPro=Lactate/malate dehydrogenase%2C N-terminal (IPR001236),Malate dehydrogenase%2C active site (IPR001252),Malate dehydrogenase%2C type 2 (IPR010945),Malate dehydrogenase%2C NADP-dependent%2C plants (IPR011273),Lactate dehydrogenase/glycoside hydrolase%2C family 4%2C C-terminal (IPR015955),NAD(P)-binding domain (IPR016040),Lactate/malate dehydrogenase%2C C-terminal (IPR022383);NIAS_FLcDNA=001-205-B06,J033098K09;TENOR=Os08t0562100-01
Chr08	irgsp1_rep	five_prime_UTR	28141176	28141249	.	+	.	Parent=Os08t0562100-01
Chr08	irgsp1_rep	CDS	28141250	28141383	.	+	0	Parent=Os08t0562100-01
Chr08	irgsp1_rep	CDS	28141482	28141587	.	+	1	Parent=Os08t0562100-01
Chr08	irgsp1_rep	CDS	28142411	28142497	.	+	0	Parent=Os08t0562100-01
Chr08	irgsp1_rep	CDS	28142596	28142680	.	+	0	Parent=Os08t0562100-01
Chr08	irgsp1_rep	CDS	28142752	28142933	.	+	2	Parent=Os08t0562100-01
Chr08	irgsp1_rep	CDS	28143163	28143233	.	+	0	Parent=Os08t0562100-01
Chr08	irgsp1_rep	CDS	28143320	28143410	.	+	1	Parent=Os08t0562100-01
Chr08	irgsp1_rep	CDS	28143492	28143566	.	+	0	Parent=Os08t0562100-01
Chr08	irgsp1_rep	CDS	28143678	28143779	.	+	0	Parent=Os08t0562100-01
Chr08	irgsp1_rep	CDS	28143862	28143984	.	+	0	Parent=Os08t0562100-01
Chr08	irgsp1_rep	CDS	28144065	28144133	.	+	0	Parent=Os08t0562100-01
Chr08	irgsp1_rep	CDS	28144232	28144300	.	+	0	Parent=Os08t0562100-01
Chr08	irgsp1_rep	CDS	28144400	28144453	.	+	0	Parent=Os08t0562100-01
Chr08	irgsp1_rep	CDS	28144557	28144610	.	+	0	Parent=Os08t0562100-01
Chr08	irgsp1_rep	three_prime_UTR	28144611	28144882	.	+	.	Parent=Os08t0562100-01
Chr08	irgsp1_rep	mRNA	28141244	28144877	.	+	.	ID=Os08t0562100-02;Name=Os08t0562100-02;Locus_id=Os08g0562100;Note=Similar to Sorghum chloroplast CM3 malate dehydrogenase (NADP) (Fragment).;Transcript_evidence=AK071494 (DDBJ%2C Best hit);ORF_evidence=B6STI6 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: malate metabolic process (GO:0006108),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: malate dehydrogenase activity (GO:0016615),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: malate dehydrogenase (NADP+) activity (GO:0046554);InterPro=Lactate/malate dehydrogenase%2C N-terminal (IPR001236),Malate dehydrogenase%2C active site (IPR001252),Malate dehydrogenase%2C type 2 (IPR010945),Malate dehydrogenase%2C NADP-dependent%2C plants (IPR011273),Lactate dehydrogenase/glycoside hydrolase%2C family 4%2C C-terminal (IPR015955),NAD(P)-binding domain (IPR016040),Lactate/malate dehydrogenase%2C C-terminal (IPR022383);NIAS_FLcDNA=J023095I23;Expression=AK071494;TENOR=Os08t0562100-02;KEGG=Os08t0562100-02 (EC:1.1.1.37)
Chr08	irgsp1_rep	five_prime_UTR	28141244	28141249	.	+	.	Parent=Os08t0562100-02
Chr08	irgsp1_rep	CDS	28141250	28141383	.	+	0	Parent=Os08t0562100-02
Chr08	irgsp1_rep	CDS	28141482	28141587	.	+	1	Parent=Os08t0562100-02
Chr08	irgsp1_rep	CDS	28142411	28142497	.	+	0	Parent=Os08t0562100-02
Chr08	irgsp1_rep	CDS	28142596	28142680	.	+	0	Parent=Os08t0562100-02
Chr08	irgsp1_rep	CDS	28142752	28142933	.	+	2	Parent=Os08t0562100-02
Chr08	irgsp1_rep	CDS	28143163	28143233	.	+	0	Parent=Os08t0562100-02
Chr08	irgsp1_rep	CDS	28143320	28143410	.	+	1	Parent=Os08t0562100-02
Chr08	irgsp1_rep	CDS	28143492	28143566	.	+	0	Parent=Os08t0562100-02
Chr08	irgsp1_rep	CDS	28143678	28143779	.	+	0	Parent=Os08t0562100-02
Chr08	irgsp1_rep	CDS	28143862	28143984	.	+	0	Parent=Os08t0562100-02
Chr08	irgsp1_rep	CDS	28144065	28144133	.	+	0	Parent=Os08t0562100-02
Chr08	irgsp1_rep	CDS	28144232	28144300	.	+	0	Parent=Os08t0562100-02
Chr08	irgsp1_rep	CDS	28144400	28144453	.	+	0	Parent=Os08t0562100-02
Chr08	irgsp1_rep	CDS	28144557	28144610	.	+	0	Parent=Os08t0562100-02
Chr08	irgsp1_rep	three_prime_UTR	28144611	28144877	.	+	.	Parent=Os08t0562100-02
Chr08	irgsp1_rep	mRNA	28144876	28149227	.	-	.	ID=Os08t0562200-02;Name=Os08t0562200-02;Locus_id=Os08g0562200;RAP-DB Gene Symbol Synonym(s)=OsNTL5;CGSNL Gene Symbol=NAC40;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 40;Oryzabase Gene Symbol Synonym(s)=ONAC040%2C ONAC40%2C ONAC054%2C ONAC54%2C OsNTL5%2C NTL5;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 040%2C NAC domain-containing protein 40%2C NAC domain-containing protein 54%2C NAC membrane-bound transcription factor 5%2C NAC MTF5%2C membrane-bound NAC-like TF 5;Note=Membrane-bound NAC-like transcription factor%2C Transcriptional repressor%2C Suppression of flowering;Transcript_evidence=AK120773,AK099629;ORF_evidence=Q6YYW2;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=NAC domain superfamily (IPR036093),NAC domain (IPR003441);NIAS_FLcDNA=J023008J18,J013057D07;Manual Curation=May 21%2C 2018;Literature_PMID=29774039;Oryzabase=11480;Expression=AK120773;TENOR=Os08t0562200-02;KEGG=Os08t0562200-02;Subcellular location=nucleus (GO:0005634), endoplasmic reticulum (GO:0005783)
Chr08	irgsp1_rep	five_prime_UTR	28149146	28149227	.	-	.	Parent=Os08t0562200-02
Chr08	irgsp1_rep	CDS	28148675	28149145	.	-	0	Parent=Os08t0562200-02
Chr08	irgsp1_rep	CDS	28147956	28148171	.	-	0	Parent=Os08t0562200-02
Chr08	irgsp1_rep	CDS	28146392	28147156	.	-	0	Parent=Os08t0562200-02
Chr08	irgsp1_rep	CDS	28146170	28146296	.	-	0	Parent=Os08t0562200-02
Chr08	irgsp1_rep	CDS	28145448	28145839	.	-	2	Parent=Os08t0562200-02
Chr08	irgsp1_rep	three_prime_UTR	28144876	28145447	.	-	.	Parent=Os08t0562200-02
Chr08	irgsp1_rep	mRNA	28145834	28149227	.	-	.	ID=Os08t0562200-03;Name=Os08t0562200-03;Locus_id=Os08g0562200;CGSNL Gene Symbol=NAC40;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 40;Oryzabase Gene Symbol Synonym(s)=ONAC040%2C ONAC40%2C ONAC054%2C ONAC54%2C OsNTL5%2C NTL5;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 040%2C NAC domain-containing protein 40%2C NAC domain-containing protein 54%2C NAC membrane-bound transcription factor 5%2C NAC MTF5%2C membrane-bound NAC-like TF 5;Note=Hypothetical conserved gene.;Transcript_evidence=AK069733 (DDBJ%2C Best hit);ORF_evidence=D9HQD9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=J023030H12;Oryzabase=11480;Expression=AK069733;TENOR=Os08t0562200-03;KEGG=Os08t0562200-03
Chr08	irgsp1_rep	five_prime_UTR	28149146	28149227	.	-	.	Parent=Os08t0562200-03
Chr08	irgsp1_rep	CDS	28148675	28149145	.	-	0	Parent=Os08t0562200-03
Chr08	irgsp1_rep	CDS	28147956	28148171	.	-	0	Parent=Os08t0562200-03
Chr08	irgsp1_rep	CDS	28146392	28147156	.	-	0	Parent=Os08t0562200-03
Chr08	irgsp1_rep	CDS	28145892	28146296	.	-	0	Parent=Os08t0562200-03
Chr08	irgsp1_rep	three_prime_UTR	28145834	28145891	.	-	.	Parent=Os08t0562200-03
Chr08	irgsp1_rep	mRNA	28155221	28156664	.	-	.	ID=Os08t0562300-01;Name=Os08t0562300-01;Locus_id=Os08g0562300;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK063290 (DDBJ%2C Best hit);ORF_evidence=B8B9L4 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=001-113-E02;Expression=AK063290;TENOR=Os08t0562300-01;KEGG=Os08t0562300-01
Chr08	irgsp1_rep	five_prime_UTR	28156655	28156664	.	-	.	Parent=Os08t0562300-01
Chr08	irgsp1_rep	CDS	28155497	28156654	.	-	0	Parent=Os08t0562300-01
Chr08	irgsp1_rep	three_prime_UTR	28155221	28155496	.	-	.	Parent=Os08t0562300-01
Chr08	irgsp1_rep	mRNA	28163136	28165305	.	-	.	ID=Os08t0562500-01;Name=Os08t0562500-01;Locus_id=Os08g0562500;RAP-DB Gene Symbol Synonym(s)=SLG;RAP-DB Gene Name Synonym(s)=SLENDER GRAIN%2C slender grain;CGSNL Gene Symbol=SLG;CGSNL Gene Name=SLENDER GRAIN;Oryzabase Gene Symbol Synonym(s)=OsSLG;Oryzabase Gene Name Synonym(s)=slender grain;Note=BAHD acyltransferase-like protein%2C Control of grain size and leaf angle%2C Regulation of brassinosteroid homeostasis;Transcript_evidence=AK109443;ORF_evidence=Q6YYV8;GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480);NIAS_FLcDNA=006-312-A03;Manual Curation=June 21%2C 2017;Literature_PMID=27252468;Oryzabase=22380;Expression=AK109443;TENOR=Os08t0562500-01;KEGG=Os08t0562500-01 (EC:2.3.1.-);Subcellular location=cytoplasm (GO:0005737), nucleus (GO:0005634)
Chr08	irgsp1_rep	five_prime_UTR	28165242	28165305	.	-	.	Parent=Os08t0562500-01
Chr08	irgsp1_rep	CDS	28164789	28165241	.	-	0	Parent=Os08t0562500-01
Chr08	irgsp1_rep	CDS	28163383	28164267	.	-	0	Parent=Os08t0562500-01
Chr08	irgsp1_rep	three_prime_UTR	28163136	28163382	.	-	.	Parent=Os08t0562500-01
Chr08	irgsp1_rep	mRNA	28162972	28165224	.	-	.	ID=Os08t0562500-02;Name=Os08t0562500-02;Locus_id=Os08g0562500;CGSNL Gene Symbol=SLG;CGSNL Gene Name=SLENDER GRAIN;Oryzabase Gene Symbol Synonym(s)=OsSLG;Oryzabase Gene Name Synonym(s)=slender grain;Note=Similar to Acyltransferase.;Transcript_evidence=AK063515 (DDBJ%2C Best hit);ORF_evidence=B4F922 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=001-116-G07;Oryzabase=22380;Expression=AK063515;TENOR=Os08t0562500-02;KEGG=Os08t0562500-02
Chr08	irgsp1_rep	five_prime_UTR	28165224	28165224	.	-	.	Parent=Os08t0562500-02
Chr08	irgsp1_rep	CDS	28164726	28165223	.	-	0	Parent=Os08t0562500-02
Chr08	irgsp1_rep	three_prime_UTR	28162972	28164725	.	-	.	Parent=Os08t0562500-02
Chr08	irgsp1_rep	mRNA	28170523	28172296	.	-	.	ID=Os08t0562600-03;Name=Os08t0562600-03;Locus_id=Os08g0562600;Note=C2 calcium-dependent membrane targeting domain containing protein.;Transcript_evidence=AK064971 (DDBJ%2C Best hit),AK061296 (DDBJ%2C Best hit),AK099905 (DDBJ%2C Best hit);ORF_evidence=B6TT83 (UniProt);NIAS_FLcDNA=J013001B15,006-301-D11,J013115M05;Expression=AK064971;TENOR=Os08t0562600-03;KEGG=Os08t0562600-03
Chr08	irgsp1_rep	five_prime_UTR	28172154	28172296	.	-	.	Parent=Os08t0562600-03
Chr08	irgsp1_rep	CDS	28171278	28172153	.	-	0	Parent=Os08t0562600-03
Chr08	irgsp1_rep	three_prime_UTR	28170523	28171277	.	-	.	Parent=Os08t0562600-03
Chr08	irgsp1_rep	mRNA	28173344	28181698	.	-	.	ID=Os08t0562700-01;Name=Os08t0562700-01;Locus_id=Os08g0562700;Oryzabase Gene Name Synonym(s)=MPA1 homolog;Note=Similar to peptidase M1 family protein.;Transcript_evidence=AK064900 (DDBJ%2C Best hit);ORF_evidence=NP_974083.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: metallopeptidase activity (GO:0008237),Molecular Function: zinc ion binding (GO:0008270);InterPro=Peptidase M1%2C alanine aminopeptidase/leukotriene A4 hydrolase (IPR001930),Peptidase M1%2C alanyl aminopeptidase (IPR012779),Peptidase M1%2C membrane alanine aminopeptidase%2C N-terminal (IPR014782);NIAS_FLcDNA=J013000L14;Oryzabase=20422;TENOR=Os08t0562700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	28181698	28181698	.	-	.	Parent=Os08t0562700-01
Chr08	irgsp1_rep	CDS	28181620	28181697	.	-	0	Parent=Os08t0562700-01
Chr08	irgsp1_rep	CDS	28180927	28181004	.	-	0	Parent=Os08t0562700-01
Chr08	irgsp1_rep	CDS	28180768	28180812	.	-	0	Parent=Os08t0562700-01
Chr08	irgsp1_rep	CDS	28180529	28180669	.	-	0	Parent=Os08t0562700-01
Chr08	irgsp1_rep	CDS	28180216	28180291	.	-	0	Parent=Os08t0562700-01
Chr08	irgsp1_rep	CDS	28179933	28180009	.	-	2	Parent=Os08t0562700-01
Chr08	irgsp1_rep	CDS	28179378	28179491	.	-	0	Parent=Os08t0562700-01
Chr08	irgsp1_rep	CDS	28179190	28179264	.	-	0	Parent=Os08t0562700-01
Chr08	irgsp1_rep	CDS	28178909	28179016	.	-	0	Parent=Os08t0562700-01
Chr08	irgsp1_rep	CDS	28178606	28178818	.	-	0	Parent=Os08t0562700-01
Chr08	irgsp1_rep	CDS	28178436	28178497	.	-	0	Parent=Os08t0562700-01
Chr08	irgsp1_rep	CDS	28178184	28178211	.	-	1	Parent=Os08t0562700-01
Chr08	irgsp1_rep	CDS	28178024	28178110	.	-	0	Parent=Os08t0562700-01
Chr08	irgsp1_rep	CDS	28177903	28177928	.	-	0	Parent=Os08t0562700-01
Chr08	irgsp1_rep	CDS	28177568	28177631	.	-	1	Parent=Os08t0562700-01
Chr08	irgsp1_rep	CDS	28177408	28177488	.	-	0	Parent=Os08t0562700-01
Chr08	irgsp1_rep	CDS	28177252	28177299	.	-	0	Parent=Os08t0562700-01
Chr08	irgsp1_rep	CDS	28177137	28177159	.	-	0	Parent=Os08t0562700-01
Chr08	irgsp1_rep	CDS	28176831	28176842	.	-	1	Parent=Os08t0562700-01
Chr08	irgsp1_rep	CDS	28176694	28176750	.	-	1	Parent=Os08t0562700-01
Chr08	irgsp1_rep	CDS	28176413	28176455	.	-	1	Parent=Os08t0562700-01
Chr08	irgsp1_rep	three_prime_UTR	28176346	28176412	.	-	.	Parent=Os08t0562700-01
Chr08	irgsp1_rep	three_prime_UTR	28176193	28176273	.	-	.	Parent=Os08t0562700-01
Chr08	irgsp1_rep	three_prime_UTR	28175800	28175983	.	-	.	Parent=Os08t0562700-01
Chr08	irgsp1_rep	three_prime_UTR	28175346	28175494	.	-	.	Parent=Os08t0562700-01
Chr08	irgsp1_rep	three_prime_UTR	28175129	28175267	.	-	.	Parent=Os08t0562700-01
Chr08	irgsp1_rep	three_prime_UTR	28174904	28175050	.	-	.	Parent=Os08t0562700-01
Chr08	irgsp1_rep	three_prime_UTR	28174582	28174663	.	-	.	Parent=Os08t0562700-01
Chr08	irgsp1_rep	three_prime_UTR	28174319	28174494	.	-	.	Parent=Os08t0562700-01
Chr08	irgsp1_rep	three_prime_UTR	28174088	28174198	.	-	.	Parent=Os08t0562700-01
Chr08	irgsp1_rep	three_prime_UTR	28173897	28174013	.	-	.	Parent=Os08t0562700-01
Chr08	irgsp1_rep	three_prime_UTR	28173738	28173809	.	-	.	Parent=Os08t0562700-01
Chr08	irgsp1_rep	three_prime_UTR	28173344	28173660	.	-	.	Parent=Os08t0562700-01
Chr08	irgsp1_rep	mRNA	28173388	28179255	.	-	.	ID=Os08t0562700-02;Name=Os08t0562700-02;Locus_id=Os08g0562700;Oryzabase Gene Name Synonym(s)=MPA1 homolog;Note=Similar to predicted protein.;Transcript_evidence=AK066773 (DDBJ%2C Best hit);ORF_evidence=B7EA73 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: metallopeptidase activity (GO:0008237),Molecular Function: zinc ion binding (GO:0008270);InterPro=Peptidase M1%2C alanine aminopeptidase/leukotriene A4 hydrolase (IPR001930),Peptidase M1%2C alanyl aminopeptidase (IPR012779),Peptidase M1%2C membrane alanine aminopeptidase%2C N-terminal (IPR014782);NIAS_FLcDNA=J013081C24;Oryzabase=20422;Expression=AK066773;TENOR=Os08t0562700-02;KEGG=Os08t0562700-02 (EC:3.4.11.2)
Chr08	irgsp1_rep	CDS	28179190	28179255	.	-	0	Parent=Os08t0562700-02
Chr08	irgsp1_rep	CDS	28178909	28179016	.	-	0	Parent=Os08t0562700-02
Chr08	irgsp1_rep	CDS	28178606	28178818	.	-	0	Parent=Os08t0562700-02
Chr08	irgsp1_rep	CDS	28178436	28178497	.	-	0	Parent=Os08t0562700-02
Chr08	irgsp1_rep	CDS	28178184	28178211	.	-	1	Parent=Os08t0562700-02
Chr08	irgsp1_rep	CDS	28178024	28178110	.	-	0	Parent=Os08t0562700-02
Chr08	irgsp1_rep	CDS	28177903	28177928	.	-	0	Parent=Os08t0562700-02
Chr08	irgsp1_rep	CDS	28177568	28177631	.	-	1	Parent=Os08t0562700-02
Chr08	irgsp1_rep	CDS	28177408	28177488	.	-	0	Parent=Os08t0562700-02
Chr08	irgsp1_rep	CDS	28177252	28177299	.	-	0	Parent=Os08t0562700-02
Chr08	irgsp1_rep	CDS	28177137	28177159	.	-	0	Parent=Os08t0562700-02
Chr08	irgsp1_rep	CDS	28176831	28176842	.	-	1	Parent=Os08t0562700-02
Chr08	irgsp1_rep	CDS	28176694	28176750	.	-	1	Parent=Os08t0562700-02
Chr08	irgsp1_rep	CDS	28176413	28176455	.	-	1	Parent=Os08t0562700-02
Chr08	irgsp1_rep	three_prime_UTR	28176346	28176412	.	-	.	Parent=Os08t0562700-02
Chr08	irgsp1_rep	three_prime_UTR	28176193	28176273	.	-	.	Parent=Os08t0562700-02
Chr08	irgsp1_rep	three_prime_UTR	28175800	28175983	.	-	.	Parent=Os08t0562700-02
Chr08	irgsp1_rep	three_prime_UTR	28175346	28175494	.	-	.	Parent=Os08t0562700-02
Chr08	irgsp1_rep	three_prime_UTR	28175129	28175267	.	-	.	Parent=Os08t0562700-02
Chr08	irgsp1_rep	three_prime_UTR	28174904	28175050	.	-	.	Parent=Os08t0562700-02
Chr08	irgsp1_rep	three_prime_UTR	28174582	28174663	.	-	.	Parent=Os08t0562700-02
Chr08	irgsp1_rep	three_prime_UTR	28174319	28174494	.	-	.	Parent=Os08t0562700-02
Chr08	irgsp1_rep	three_prime_UTR	28174088	28174198	.	-	.	Parent=Os08t0562700-02
Chr08	irgsp1_rep	three_prime_UTR	28173897	28174013	.	-	.	Parent=Os08t0562700-02
Chr08	irgsp1_rep	three_prime_UTR	28173738	28173809	.	-	.	Parent=Os08t0562700-02
Chr08	irgsp1_rep	three_prime_UTR	28173388	28173660	.	-	.	Parent=Os08t0562700-02
Chr08	irgsp1_rep	mRNA	28174365	28175044	.	+	.	ID=Os08t0562750-00;Name=Os08t0562750-00;Locus_id=Os08g0562750;Note=Non-protein coding transcript.;Transcript_evidence=AJ234438 (DDBJ);ORF_evidence=NONE;TENOR=Os08t0562750-00
Chr08	irgsp1_rep	exon	28174365	28174494	.	+	.	Parent=Os08t0562750-00
Chr08	irgsp1_rep	exon	28174582	28174651	.	+	.	Parent=Os08t0562750-00
Chr08	irgsp1_rep	exon	28174889	28175044	.	+	.	Parent=Os08t0562750-00
Chr08	irgsp1_rep	mRNA	28184232	28185866	.	-	.	ID=Os08t0562800-01;Name=Os08t0562800-01;Locus_id=Os08g0562800;Note=Similar to Transparent testa 12 protein.;Transcript_evidence=AK105950 (DDBJ%2C Best hit);ORF_evidence=B6TVF7 (UniProt);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);NIAS_FLcDNA=001-205-C12;Oryzabase=22046;Expression=AK105950;TENOR=Os08t0562800-01;KEGG=Os08t0562800-01
Chr08	irgsp1_rep	five_prime_UTR	28185822	28185866	.	-	.	Parent=Os08t0562800-01
Chr08	irgsp1_rep	CDS	28184466	28185821	.	-	0	Parent=Os08t0562800-01
Chr08	irgsp1_rep	three_prime_UTR	28184232	28184465	.	-	.	Parent=Os08t0562800-01
Chr08	irgsp1_rep	mRNA	28183873	28185716	.	-	.	ID=Os08t0562800-02;Name=Os08t0562800-02;Locus_id=Os08g0562800;Note=Similar to Transparent testa 12 protein.;Transcript_evidence=AK103815 (DDBJ%2C Best hit);ORF_evidence=B6TVF7 (UniProt);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);NIAS_FLcDNA=J033147C23;Oryzabase=22046;TENOR=Os08t0562800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	28185657	28185716	.	-	.	Parent=Os08t0562800-02
Chr08	irgsp1_rep	CDS	28184529	28185656	.	-	0	Parent=Os08t0562800-02
Chr08	irgsp1_rep	CDS	28184303	28184389	.	-	0	Parent=Os08t0562800-02
Chr08	irgsp1_rep	CDS	28184102	28184191	.	-	0	Parent=Os08t0562800-02
Chr08	irgsp1_rep	three_prime_UTR	28183873	28184101	.	-	.	Parent=Os08t0562800-02
Chr08	irgsp1_rep	mRNA	28184536	28187611	.	+	.	ID=Os08t0562866-00;Name=Os08t0562866-00;Locus_id=Os08g0562866;Note=Hypothetical protein.;Transcript_evidence=tplb0057a08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0562866-00
Chr08	irgsp1_rep	five_prime_UTR	28184536	28185737	.	+	.	Parent=Os08t0562866-00
Chr08	irgsp1_rep	CDS	28185738	28185785	.	+	0	Parent=Os08t0562866-00
Chr08	irgsp1_rep	CDS	28187407	28187611	.	+	0	Parent=Os08t0562866-00
Chr08	irgsp1_rep	mRNA	28201024	28202721	.	-	.	ID=Os08t0563200-01;Name=Os08t0563200-01;Locus_id=Os08g0563200;Note=Protein of unknown function DUF296 domain containing protein.;Transcript_evidence=AK110263 (DDBJ%2C Best hit);ORF_evidence=NP_001151240.1 (RefSeq);InterPro=Domain of unknown function DUF296 (IPR005175),Predicted AT-hook DNA-binding (IPR014476);NIAS_FLcDNA=002-163-B06;Expression=AK110263;TENOR=Os08t0563200-01;KEGG=Os08t0563200-01
Chr08	irgsp1_rep	five_prime_UTR	28202635	28202721	.	-	.	Parent=Os08t0563200-01
Chr08	irgsp1_rep	five_prime_UTR	28202088	28202334	.	-	.	Parent=Os08t0563200-01
Chr08	irgsp1_rep	CDS	28201380	28202087	.	-	0	Parent=Os08t0563200-01
Chr08	irgsp1_rep	three_prime_UTR	28201024	28201379	.	-	.	Parent=Os08t0563200-01
Chr08	irgsp1_rep	mRNA	28208778	28211676	.	-	.	ID=Os08t0563300-01;Name=Os08t0563300-01;Locus_id=Os08g0563300;Note=Similar to Bet1-like SNARE 1-1 (AtBET11) (Bet1/Sft1-like SNARE 14a) (AtBS14a).;Transcript_evidence=AK062315 (DDBJ%2C Best hit);ORF_evidence=NP_001151421.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Target SNARE coiled-coil domain (IPR000727);NIAS_FLcDNA=001-101-C02;Expression=AK062315;TENOR=Os08t0563300-01;KEGG=Os08t0563300-01
Chr08	irgsp1_rep	five_prime_UTR	28211574	28211676	.	-	.	Parent=Os08t0563300-01
Chr08	irgsp1_rep	CDS	28211560	28211573	.	-	0	Parent=Os08t0563300-01
Chr08	irgsp1_rep	CDS	28210768	28210912	.	-	1	Parent=Os08t0563300-01
Chr08	irgsp1_rep	CDS	28209282	28209338	.	-	0	Parent=Os08t0563300-01
Chr08	irgsp1_rep	CDS	28209155	28209214	.	-	0	Parent=Os08t0563300-01
Chr08	irgsp1_rep	CDS	28208971	28209060	.	-	0	Parent=Os08t0563300-01
Chr08	irgsp1_rep	three_prime_UTR	28208778	28208970	.	-	.	Parent=Os08t0563300-01
Chr08	irgsp1_rep	mRNA	28212725	28213764	.	-	.	ID=Os08t0563400-00;Name=Os08t0563400-00;Locus_id=Os08g0563400;Note=Similar to LOB domain protein 17.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001106033.1 (RefSeq);InterPro=Lateral organ boundaries%2C LOB (IPR004883);TENOR=Os08t0563400-00;KEGG=Os08t0563400-00
Chr08	irgsp1_rep	CDS	28213486	28213764	.	-	0	Parent=Os08t0563400-00
Chr08	irgsp1_rep	CDS	28212725	28213093	.	-	0	Parent=Os08t0563400-00
Chr08	irgsp1_rep	mRNA	28214432	28217144	.	+	.	ID=Os08t0563450-00;Name=Os08t0563450-00;Locus_id=Os08g0563450;Note=Hypothetical protein.;Transcript_evidence=BT084514 (DDBJ);ORF_evidence=longestORF;TENOR=Os08t0563450-00
Chr08	irgsp1_rep	five_prime_UTR	28214432	28214490	.	+	.	Parent=Os08t0563450-00
Chr08	irgsp1_rep	CDS	28214491	28214554	.	+	0	Parent=Os08t0563450-00
Chr08	irgsp1_rep	CDS	28214657	28214967	.	+	2	Parent=Os08t0563450-00
Chr08	irgsp1_rep	three_prime_UTR	28214968	28215162	.	+	.	Parent=Os08t0563450-00
Chr08	irgsp1_rep	three_prime_UTR	28217036	28217144	.	+	.	Parent=Os08t0563450-00
Chr08	irgsp1_rep	mRNA	28220313	28221038	.	-	.	ID=Os08t0563500-00;Name=Os08t0563500-00;Locus_id=Os08g0563500;Note=Hypothetical conserved gene.;Transcript_evidence=AK371256 (DDBJ);ORF_evidence=Q84ZB5 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os08t0563500-00;KEGG=Os08t0563500-00
Chr08	irgsp1_rep	CDS	28220313	28221038	.	-	0	Parent=Os08t0563500-00
Chr08	irgsp1_rep	mRNA	28244202	28246028	.	+	.	ID=Os08t0564000-01;Name=Os08t0564000-01;Locus_id=Os08g0564000;RAP-DB Gene Symbol Synonym(s)=PT6%2C OsPT6%2C PHT1-6%2C OsPht1%3B6%2C OsLPT6:1%2C OsLPT1%2C OsPT6:1;RAP-DB Gene Name Synonym(s)=PHOSPHATE TRANSPORTER 6%2C Inorganic phosphate transporter 1-6;CGSNL Gene Symbol=PT6;CGSNL Gene Name=PHOSPHATE TRANSPORTER 6;Oryzabase Gene Symbol Synonym(s)=OsPT6%2C PHT1-6%2C OsPht1%3B6%2C OsLPT6:1%2C OsLPT1%2C OsPT6:1%2C Pht1%3B6%2C LPT6:1%2C LPT1%2C PT6:1;Oryzabase Gene Name Synonym(s)=Inorganic phosphate transporter 1-6;Note=Pi transporter%2C Pi homeostasis;Transcript_evidence=AF536966 (Genbank),AK119787 (Genbank);ORF_evidence=Q8H6H0 (UniProt);GO=Biological Process: phosphate ion transport (GO:0006817),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: inorganic phosphate transmembrane transporter activity (GO:0005315),Molecular Function: transmembrane transporter activity (GO:0022857);InterPro=Phosphate permease (IPR004738),General substrate transporter (IPR005828),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=002-174-D01;Manual Curation=June 21%2C 2010;Literature_PMID=16217552,18980647;Oryzabase=8221;TENOR=Os08t0564000-01;KEGG=Os08t0564000-01
Chr08	irgsp1_rep	five_prime_UTR	28244202	28244230	.	+	.	Parent=Os08t0564000-01
Chr08	irgsp1_rep	CDS	28244231	28245835	.	+	0	Parent=Os08t0564000-01
Chr08	irgsp1_rep	three_prime_UTR	28245836	28246028	.	+	.	Parent=Os08t0564000-01
Chr08	irgsp1_rep	mRNA	28250636	28253966	.	-	.	ID=Os08t0564100-01;Name=Os08t0564100-01;Locus_id=Os08g0564100;CGSNL Gene Symbol=ABCF4;CGSNL Gene Name=ABC TRANSPORTER F FAMILY MEMBER 4;Oryzabase Gene Symbol Synonym(s)=OsABCF4;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCF subgroup member 4;Note=Similar to ATP-binding cassette%2C sub-family F%2C member 2 (Iron inhibited ABC transporter 2) (HUSSY-18).;Transcript_evidence=AK063258 (DDBJ%2C Best hit);ORF_evidence=XP_002331473.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=001-113-A02;Oryzabase=11978;Expression=AK063258;TENOR=Os08t0564100-01;KEGG=Os08t0564100-01
Chr08	irgsp1_rep	five_prime_UTR	28253908	28253966	.	-	.	Parent=Os08t0564100-01
Chr08	irgsp1_rep	CDS	28253707	28253907	.	-	0	Parent=Os08t0564100-01
Chr08	irgsp1_rep	CDS	28253076	28253149	.	-	0	Parent=Os08t0564100-01
Chr08	irgsp1_rep	CDS	28252766	28252976	.	-	1	Parent=Os08t0564100-01
Chr08	irgsp1_rep	CDS	28252391	28252625	.	-	0	Parent=Os08t0564100-01
Chr08	irgsp1_rep	CDS	28250774	28251831	.	-	2	Parent=Os08t0564100-01
Chr08	irgsp1_rep	three_prime_UTR	28250636	28250773	.	-	.	Parent=Os08t0564100-01
Chr08	irgsp1_rep	mRNA	28250787	28253911	.	+	.	ID=Os08t0564200-00;Name=Os08t0564200-00;Locus_id=Os08g0564200;Note=Hypothetical protein.;Transcript_evidence=tplb0030n11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0564200-00
Chr08	irgsp1_rep	five_prime_UTR	28250787	28250902	.	+	.	Parent=Os08t0564200-00
Chr08	irgsp1_rep	CDS	28250903	28251175	.	+	0	Parent=Os08t0564200-00
Chr08	irgsp1_rep	three_prime_UTR	28251176	28251831	.	+	.	Parent=Os08t0564200-00
Chr08	irgsp1_rep	three_prime_UTR	28252391	28252633	.	+	.	Parent=Os08t0564200-00
Chr08	irgsp1_rep	three_prime_UTR	28252774	28252982	.	+	.	Parent=Os08t0564200-00
Chr08	irgsp1_rep	three_prime_UTR	28253085	28253129	.	+	.	Parent=Os08t0564200-00
Chr08	irgsp1_rep	three_prime_UTR	28253687	28253911	.	+	.	Parent=Os08t0564200-00
Chr08	irgsp1_rep	mRNA	28264285	28269919	.	+	.	ID=Os08t0564300-01;Name=Os08t0564300-01;Locus_id=Os08g0564300;CGSNL Gene Symbol=MDR14;CGSNL Gene Name=MULTIDRUG RESISTANCE 14;Oryzabase Gene Symbol Synonym(s)=OsABCB22%2C ABCB22%2C OsPGP22%2C OsMDR14;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCB subgroup member 22%2C P-Glycoprotein 22%2C multidrug resistance 14;Note=ABC transporter-like domain containing protein.;Transcript_evidence=AK119880 (DDBJ%2C Best hit);ORF_evidence=Q7EZL2 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);NIAS_FLcDNA=002-179-G08;Oryzabase=11941;Expression=AK119880;TENOR=Os08t0564300-01;KEGG=Os08t0564300-01
Chr08	irgsp1_rep	five_prime_UTR	28264285	28264516	.	+	.	Parent=Os08t0564300-01
Chr08	irgsp1_rep	CDS	28264517	28264566	.	+	0	Parent=Os08t0564300-01
Chr08	irgsp1_rep	CDS	28264819	28265670	.	+	1	Parent=Os08t0564300-01
Chr08	irgsp1_rep	CDS	28265765	28266295	.	+	1	Parent=Os08t0564300-01
Chr08	irgsp1_rep	CDS	28267448	28268841	.	+	1	Parent=Os08t0564300-01
Chr08	irgsp1_rep	CDS	28269850	28269881	.	+	2	Parent=Os08t0564300-01
Chr08	irgsp1_rep	three_prime_UTR	28269882	28269919	.	+	.	Parent=Os08t0564300-01
Chr08	irgsp1_rep	mRNA	28264285	28269897	.	+	.	ID=Os08t0564300-02;Name=Os08t0564300-02;Locus_id=Os08g0564300;CGSNL Gene Symbol=MDR14;CGSNL Gene Name=MULTIDRUG RESISTANCE 14;Oryzabase Gene Symbol Synonym(s)=OsABCB22%2C ABCB22%2C OsPGP22%2C OsMDR14;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCB subgroup member 22%2C P-Glycoprotein 22%2C multidrug resistance 14;Note=Similar to P-glycoprotein 1.;Transcript_evidence=AK063134 (DDBJ%2C Best hit);ORF_evidence=Q7EZL2 (UniProt);NIAS_FLcDNA=001-111-F12;Oryzabase=11941;Expression=AK063134;TENOR=Os08t0564300-02;KEGG=Os08t0564300-02
Chr08	irgsp1_rep	five_prime_UTR	28264285	28264516	.	+	.	Parent=Os08t0564300-02
Chr08	irgsp1_rep	CDS	28264517	28264667	.	+	0	Parent=Os08t0564300-02
Chr08	irgsp1_rep	CDS	28269849	28269889	.	+	2	Parent=Os08t0564300-02
Chr08	irgsp1_rep	three_prime_UTR	28269890	28269897	.	+	.	Parent=Os08t0564300-02
Chr08	irgsp1_rep	mRNA	28264289	28265856	.	+	.	ID=Os08t0564300-03;Name=Os08t0564300-03;Locus_id=Os08g0564300;CGSNL Gene Symbol=MDR14;CGSNL Gene Name=MULTIDRUG RESISTANCE 14;Oryzabase Gene Symbol Synonym(s)=OsABCB22%2C ABCB22%2C OsPGP22%2C OsMDR14;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCB subgroup member 22%2C P-Glycoprotein 22%2C multidrug resistance 14;Note=Hypothetical conserved gene.;Transcript_evidence=AK106260 (DDBJ%2C Best hit);ORF_evidence=Q8GU78 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C integral membrane type 1 (IPR017940);NIAS_FLcDNA=002-100-F06;Oryzabase=11941;TENOR=Os08t0564300-03
Chr08	irgsp1_rep	five_prime_UTR	28264289	28264516	.	+	.	Parent=Os08t0564300-03
Chr08	irgsp1_rep	CDS	28264517	28265670	.	+	0	Parent=Os08t0564300-03
Chr08	irgsp1_rep	CDS	28265765	28265856	.	+	1	Parent=Os08t0564300-03
Chr08	irgsp1_rep	mRNA	28264482	28269919	.	+	.	ID=Os08t0564300-04;Name=Os08t0564300-04;Locus_id=Os08g0564300;CGSNL Gene Symbol=MDR14;CGSNL Gene Name=MULTIDRUG RESISTANCE 14;Oryzabase Gene Symbol Synonym(s)=OsABCB22%2C ABCB22%2C OsPGP22%2C OsMDR14;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCB subgroup member 22%2C P-Glycoprotein 22%2C multidrug resistance 14;Note=P-glycoprotein 1.;Transcript_evidence=AK121506 (DDBJ%2C Best hit);ORF_evidence=Q8GU78 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);NIAS_FLcDNA=J033022P13;Oryzabase=11941;Expression=AK121506;TENOR=Os08t0564300-04;KEGG=Os08t0564300-04
Chr08	irgsp1_rep	five_prime_UTR	28264482	28264516	.	+	.	Parent=Os08t0564300-04
Chr08	irgsp1_rep	CDS	28264517	28265670	.	+	0	Parent=Os08t0564300-04
Chr08	irgsp1_rep	CDS	28265765	28266295	.	+	1	Parent=Os08t0564300-04
Chr08	irgsp1_rep	CDS	28267448	28269797	.	+	1	Parent=Os08t0564300-04
Chr08	irgsp1_rep	three_prime_UTR	28269798	28269919	.	+	.	Parent=Os08t0564300-04
Chr08	irgsp1_rep	mRNA	28266777	28269924	.	+	.	ID=Os08t0564300-05;Name=Os08t0564300-05;Locus_id=Os08g0564300;CGSNL Gene Symbol=MDR14;CGSNL Gene Name=MULTIDRUG RESISTANCE 14;Oryzabase Gene Symbol Synonym(s)=OsABCB22%2C ABCB22%2C OsPGP22%2C OsMDR14;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCB subgroup member 22%2C P-Glycoprotein 22%2C multidrug resistance 14;Note=Similar to MDR-like ABC transporter.;Transcript_evidence=AK111817 (DDBJ%2C Best hit);ORF_evidence=Q8GU78 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);NIAS_FLcDNA=J013139P17;Oryzabase=11941;Expression=AK111817;TENOR=Os08t0564300-05;KEGG=Os08t0564300-05
Chr08	irgsp1_rep	five_prime_UTR	28266777	28267218	.	+	.	Parent=Os08t0564300-05
Chr08	irgsp1_rep	CDS	28267219	28267284	.	+	0	Parent=Os08t0564300-05
Chr08	irgsp1_rep	CDS	28267452	28269797	.	+	0	Parent=Os08t0564300-05
Chr08	irgsp1_rep	three_prime_UTR	28269798	28269924	.	+	.	Parent=Os08t0564300-05
Chr08	irgsp1_rep	mRNA	28268230	28269903	.	+	.	ID=Os08t0564300-06;Name=Os08t0564300-06;Locus_id=Os08g0564300;CGSNL Gene Symbol=MDR14;CGSNL Gene Name=MULTIDRUG RESISTANCE 14;Oryzabase Gene Symbol Synonym(s)=OsABCB22%2C ABCB22%2C OsPGP22%2C OsMDR14;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCB subgroup member 22%2C P-Glycoprotein 22%2C multidrug resistance 14;Note=Similar to MDR-like ABC transporter.;Transcript_evidence=AK105923 (DDBJ%2C Best hit);ORF_evidence=Q8GU78 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);NIAS_FLcDNA=001-205-A06;Oryzabase=11941;Expression=AK105923;TENOR=Os08t0564300-06;KEGG=Os08t0564300-06
Chr08	irgsp1_rep	five_prime_UTR	28268230	28268231	.	+	.	Parent=Os08t0564300-06
Chr08	irgsp1_rep	CDS	28268232	28269797	.	+	0	Parent=Os08t0564300-06
Chr08	irgsp1_rep	three_prime_UTR	28269798	28269903	.	+	.	Parent=Os08t0564300-06
Chr08	irgsp1_rep	mRNA	28267322	28269900	.	-	.	ID=Os08t0564400-01;Name=Os08t0564400-01;Locus_id=Os08g0564400;Note=Hypothetical protein.;Transcript_evidence=AK111869 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033045G11;Expression=AK111869;TENOR=Os08t0564400-01;KEGG=Os08t0564400-01
Chr08	irgsp1_rep	five_prime_UTR	28268843	28269900	.	-	.	Parent=Os08t0564400-01
Chr08	irgsp1_rep	CDS	28268174	28268842	.	-	0	Parent=Os08t0564400-01
Chr08	irgsp1_rep	three_prime_UTR	28267322	28268173	.	-	.	Parent=Os08t0564400-01
Chr08	irgsp1_rep	mRNA	28272340	28274465	.	-	.	ID=Os08t0564500-01;Name=Os08t0564500-01;Locus_id=Os08g0564500;Note=Zinc finger%2C U1-type domain containing protein.;Transcript_evidence=AK242895 (DDBJ%2C Best hit);ORF_evidence=NP_565854.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2-type matrin (IPR000690),Zinc finger%2C U1-type (IPR003604),Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C double-stranded RNA binding (IPR022755);NIAS_FLcDNA=J090081A12;TENOR=Os08t0564500-01;KEGG=Os08t0564500-01
Chr08	irgsp1_rep	five_prime_UTR	28274394	28274465	.	-	.	Parent=Os08t0564500-01
Chr08	irgsp1_rep	CDS	28274185	28274393	.	-	0	Parent=Os08t0564500-01
Chr08	irgsp1_rep	CDS	28273788	28273850	.	-	1	Parent=Os08t0564500-01
Chr08	irgsp1_rep	CDS	28272494	28272596	.	-	1	Parent=Os08t0564500-01
Chr08	irgsp1_rep	three_prime_UTR	28272340	28272493	.	-	.	Parent=Os08t0564500-01
Chr08	irgsp1_rep	mRNA	28290248	28292527	.	-	.	ID=Os08t0564700-01;Name=Os08t0564700-01;Locus_id=Os08g0564700;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK243457 (DDBJ%2C Best hit);ORF_evidence=B6SVQ5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J100070M16;TENOR=Os08t0564700-01;KEGG=Os08t0564700-01
Chr08	irgsp1_rep	five_prime_UTR	28292481	28292527	.	-	.	Parent=Os08t0564700-01
Chr08	irgsp1_rep	CDS	28290492	28292480	.	-	0	Parent=Os08t0564700-01
Chr08	irgsp1_rep	three_prime_UTR	28290248	28290491	.	-	.	Parent=Os08t0564700-01
Chr08	irgsp1_rep	mRNA	28293729	28294610	.	+	.	ID=Os08t0564750-00;Name=Os08t0564750-00;Locus_id=Os08g0564750;Note=Hypothetical conserved gene.;Transcript_evidence=CT835912 (DDBJ%2C Best hit);ORF_evidence=NP_001175704.1 (RefSeq);TENOR=Os08t0564750-00;KEGG=Os08t0564750-00
Chr08	irgsp1_rep	five_prime_UTR	28293729	28293729	.	+	.	Parent=Os08t0564750-00
Chr08	irgsp1_rep	CDS	28293730	28293927	.	+	0	Parent=Os08t0564750-00
Chr08	irgsp1_rep	three_prime_UTR	28293928	28293975	.	+	.	Parent=Os08t0564750-00
Chr08	irgsp1_rep	three_prime_UTR	28294365	28294610	.	+	.	Parent=Os08t0564750-00
Chr08	irgsp1_rep	mRNA	28295077	28305341	.	-	.	ID=Os08t0564800-01;Name=Os08t0564800-01;Locus_id=Os08g0564800;Oryzabase Gene Symbol Synonym(s)=OsMED15_2%2C OsKIX_10%2C MED15_2%2C KIX_10;Oryzabase Gene Name Synonym(s)=KIX domain protein 10%2C Mediator 15_2;Note=Coactivator CBP%2C KIX domain containing protein.;Transcript_evidence=AK071244 (DDBJ%2C Best hit);ORF_evidence=Q8H6Q7 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: transcription cofactor activity (GO:0003712);InterPro=Coactivator CBP%2C KIX (IPR003101);NIAS_FLcDNA=J023088K02;Oryzabase=13464;Expression=AK071244;TENOR=Os08t0564800-01;KEGG=Os08t0564800-01
Chr08	irgsp1_rep	five_prime_UTR	28305200	28305341	.	-	.	Parent=Os08t0564800-01
Chr08	irgsp1_rep	CDS	28305042	28305199	.	-	0	Parent=Os08t0564800-01
Chr08	irgsp1_rep	CDS	28304138	28304249	.	-	1	Parent=Os08t0564800-01
Chr08	irgsp1_rep	CDS	28303163	28303271	.	-	0	Parent=Os08t0564800-01
Chr08	irgsp1_rep	CDS	28300402	28301634	.	-	2	Parent=Os08t0564800-01
Chr08	irgsp1_rep	CDS	28299832	28299908	.	-	2	Parent=Os08t0564800-01
Chr08	irgsp1_rep	CDS	28297469	28298914	.	-	0	Parent=Os08t0564800-01
Chr08	irgsp1_rep	CDS	28296324	28296665	.	-	0	Parent=Os08t0564800-01
Chr08	irgsp1_rep	CDS	28295876	28296070	.	-	0	Parent=Os08t0564800-01
Chr08	irgsp1_rep	CDS	28295711	28295799	.	-	0	Parent=Os08t0564800-01
Chr08	irgsp1_rep	CDS	28295394	28295595	.	-	1	Parent=Os08t0564800-01
Chr08	irgsp1_rep	three_prime_UTR	28295077	28295393	.	-	.	Parent=Os08t0564800-01
Chr08	irgsp1_rep	mRNA	28311329	28315144	.	+	.	ID=Os08t0564900-01;Name=Os08t0564900-01;Locus_id=Os08g0564900;Note=Conserved hypothetical protein.;Transcript_evidence=AK120585 (DDBJ%2C Best hit);ORF_evidence=NP_001063290.1 (RefSeq);NIAS_FLcDNA=J013139A20;Expression=AK120585;TENOR=Os08t0564900-01;KEGG=Os08t0564900-01
Chr08	irgsp1_rep	five_prime_UTR	28311329	28311892	.	+	.	Parent=Os08t0564900-01
Chr08	irgsp1_rep	five_prime_UTR	28312087	28312139	.	+	.	Parent=Os08t0564900-01
Chr08	irgsp1_rep	five_prime_UTR	28312474	28312562	.	+	.	Parent=Os08t0564900-01
Chr08	irgsp1_rep	five_prime_UTR	28312851	28312878	.	+	.	Parent=Os08t0564900-01
Chr08	irgsp1_rep	CDS	28312879	28312932	.	+	0	Parent=Os08t0564900-01
Chr08	irgsp1_rep	CDS	28313025	28313079	.	+	0	Parent=Os08t0564900-01
Chr08	irgsp1_rep	CDS	28313934	28314127	.	+	2	Parent=Os08t0564900-01
Chr08	irgsp1_rep	three_prime_UTR	28314128	28314156	.	+	.	Parent=Os08t0564900-01
Chr08	irgsp1_rep	three_prime_UTR	28314272	28314426	.	+	.	Parent=Os08t0564900-01
Chr08	irgsp1_rep	three_prime_UTR	28314633	28314709	.	+	.	Parent=Os08t0564900-01
Chr08	irgsp1_rep	three_prime_UTR	28314858	28315144	.	+	.	Parent=Os08t0564900-01
Chr08	irgsp1_rep	mRNA	28321217	28322367	.	-	.	ID=Os08t0565200-01;Name=Os08t0565200-01;Locus_id=Os08g0565200;CGSNL Gene Symbol=ERF44;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 44;Oryzabase Gene Symbol Synonym(s)=OsERF#044%2C OsERF044%2C OsERF44%2C AP2/EREBP#112%2C AP2/EREBP112%2C OsDREB2C%2C DREB2C%2C OsEnS-124;Oryzabase Gene Name Synonym(s)=ethylene response factor 44%2C APETALA2/ethylene-responsive element binding protein 112%2C dehydration-responsive element-binding protein 2C%2C endosperm-specific gene 124;Note=Pathogenesis-related transcriptional factor and ERF domain containing protein.;Transcript_evidence=AK108143 (DDBJ%2C Best hit);ORF_evidence=Q84ZA1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=002-139-E11;Oryzabase=10561;Expression=AK108143;TENOR=Os08t0565200-01;KEGG=Os08t0565200-01
Chr08	irgsp1_rep	five_prime_UTR	28322337	28322367	.	-	.	Parent=Os08t0565200-01
Chr08	irgsp1_rep	CDS	28321644	28322336	.	-	0	Parent=Os08t0565200-01
Chr08	irgsp1_rep	three_prime_UTR	28321217	28321643	.	-	.	Parent=Os08t0565200-01
Chr08	irgsp1_rep	mRNA	28336857	28338688	.	-	.	ID=Os08t0565450-00;Name=Os08t0565450-00;Locus_id=Os08g0565450;Note=Similar to H0107B07.4 protein.;Transcript_evidence=tplb0003f19 (Wheat FLcDNA);ORF_evidence=Q01M50 (UniProt);TENOR=Os08t0565450-00
Chr08	irgsp1_rep	five_prime_UTR	28338612	28338688	.	-	.	Parent=Os08t0565450-00
Chr08	irgsp1_rep	five_prime_UTR	28338471	28338509	.	-	.	Parent=Os08t0565450-00
Chr08	irgsp1_rep	CDS	28338405	28338470	.	-	0	Parent=Os08t0565450-00
Chr08	irgsp1_rep	CDS	28338038	28338187	.	-	0	Parent=Os08t0565450-00
Chr08	irgsp1_rep	three_prime_UTR	28338025	28338037	.	-	.	Parent=Os08t0565450-00
Chr08	irgsp1_rep	three_prime_UTR	28337064	28337291	.	-	.	Parent=Os08t0565450-00
Chr08	irgsp1_rep	three_prime_UTR	28336857	28336977	.	-	.	Parent=Os08t0565450-00
Chr08	irgsp1_rep	mRNA	28341020	28343112	.	-	.	ID=Os08t0565700-01;Name=Os08t0565700-01;Locus_id=Os08g0565700;Oryzabase Gene Symbol Synonym(s)=OsSET32%2C SDG715%2C OsSUVH9;Oryzabase Gene Name Synonym(s)=SET protein 32%2C SUVH Histone Methyltransferase 9;Note=SET domain containing protein.;Transcript_evidence=AK067640 (DDBJ%2C Best hit);ORF_evidence=B8B9M4 (UniProt);GO=Biological Process: histone lysine methylation (GO:0034968),Cellular Component: nucleus (GO:0005634),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: histone-lysine N-methyltransferase activity (GO:0018024),Molecular Function: histone binding (GO:0042393);InterPro=SET domain (IPR001214),SRA-YDG (IPR003105),Pre-SET domain (IPR007728);NIAS_FLcDNA=J013110N01;Oryzabase=13396;Expression=AK067640;TENOR=Os08t0565700-01;KEGG=Os08t0565700-01 (EC:2.1.1.43)
Chr08	irgsp1_rep	five_prime_UTR	28343094	28343112	.	-	.	Parent=Os08t0565700-01
Chr08	irgsp1_rep	CDS	28341309	28343093	.	-	0	Parent=Os08t0565700-01
Chr08	irgsp1_rep	three_prime_UTR	28341020	28341308	.	-	.	Parent=Os08t0565700-01
Chr08	irgsp1_rep	mRNA	28341313	28343142	.	+	.	ID=Os08t0565750-00;Name=Os08t0565750-00;Locus_id=Os08g0565750;Note=Hypothetical protein.;Transcript_evidence=tplb0037b03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0565750-00
Chr08	irgsp1_rep	five_prime_UTR	28341313	28342151	.	+	.	Parent=Os08t0565750-00
Chr08	irgsp1_rep	CDS	28342152	28343033	.	+	0	Parent=Os08t0565750-00
Chr08	irgsp1_rep	three_prime_UTR	28343034	28343142	.	+	.	Parent=Os08t0565750-00
Chr08	irgsp1_rep	mRNA	28343339	28345526	.	+	.	ID=Os08t0565800-01;Name=Os08t0565800-01;Locus_id=Os08g0565800;CGSNL Gene Symbol=GRX21;CGSNL Gene Name=GLUTAREDOXIN 21;Oryzabase Gene Symbol Synonym(s)=OsGRX21;Oryzabase Gene Name Synonym(s)=glutaredoxin 21;Note=Glutaredoxin.;Transcript_evidence=AK062820 (DDBJ%2C Best hit);ORF_evidence=Q0J3L4 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin (IPR002109),Thioredoxin-like fold (IPR012336),Glutaredoxin subgroup (IPR014025);NIAS_FLcDNA=001-107-F01;Oryzabase=13590;Expression=AK062820;TENOR=Os08t0565800-01;KEGG=Os08t0565800-01
Chr08	irgsp1_rep	five_prime_UTR	28343339	28343339	.	+	.	Parent=Os08t0565800-01
Chr08	irgsp1_rep	CDS	28343340	28343654	.	+	0	Parent=Os08t0565800-01
Chr08	irgsp1_rep	CDS	28343773	28343806	.	+	0	Parent=Os08t0565800-01
Chr08	irgsp1_rep	CDS	28344404	28344478	.	+	2	Parent=Os08t0565800-01
Chr08	irgsp1_rep	CDS	28344675	28344701	.	+	2	Parent=Os08t0565800-01
Chr08	irgsp1_rep	CDS	28345259	28345335	.	+	2	Parent=Os08t0565800-01
Chr08	irgsp1_rep	three_prime_UTR	28345336	28345526	.	+	.	Parent=Os08t0565800-01
Chr08	irgsp1_rep	mRNA	28343348	28345526	.	+	.	ID=Os08t0565800-02;Name=Os08t0565800-02;Locus_id=Os08g0565800;CGSNL Gene Symbol=GRX21;CGSNL Gene Name=GLUTAREDOXIN 21;Oryzabase Gene Symbol Synonym(s)=OsGRX21;Oryzabase Gene Name Synonym(s)=glutaredoxin 21;Note=Similar to Glutaredoxin.;Transcript_evidence=AK062431 (DDBJ%2C Best hit);ORF_evidence=Q0J3L4 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin (IPR002109),Glutaredoxin%2C eukaryotic/virial (IPR011899),Thioredoxin-like fold (IPR012336),Glutaredoxin subgroup (IPR014025);NIAS_FLcDNA=001-102-H10;Oryzabase=13590;Expression=AK062431;TENOR=Os08t0565800-02;KEGG=Os08t0565800-02
Chr08	irgsp1_rep	five_prime_UTR	28343348	28343409	.	+	.	Parent=Os08t0565800-02
Chr08	irgsp1_rep	CDS	28343410	28343651	.	+	0	Parent=Os08t0565800-02
Chr08	irgsp1_rep	CDS	28343733	28343806	.	+	1	Parent=Os08t0565800-02
Chr08	irgsp1_rep	CDS	28344404	28344478	.	+	2	Parent=Os08t0565800-02
Chr08	irgsp1_rep	CDS	28344675	28344701	.	+	2	Parent=Os08t0565800-02
Chr08	irgsp1_rep	CDS	28345259	28345335	.	+	2	Parent=Os08t0565800-02
Chr08	irgsp1_rep	three_prime_UTR	28345336	28345526	.	+	.	Parent=Os08t0565800-02
Chr08	irgsp1_rep	mRNA	28346377	28348010	.	+	.	ID=Os08t0565900-01;Name=Os08t0565900-01;Locus_id=Os08g0565900;CGSNL Gene Symbol=GELP96;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 96;Oryzabase Gene Symbol Synonym(s)=OsGELP96%2C OsGELP96a%2C OsGELP96b;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 96;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK106778 (DDBJ%2C Best hit);ORF_evidence=B6UBC0 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=002-115-H02;Oryzabase=11046;Expression=AK106778;TENOR=Os08t0565900-01;KEGG=Os08t0565900-01
Chr08	irgsp1_rep	five_prime_UTR	28346377	28346459	.	+	.	Parent=Os08t0565900-01
Chr08	irgsp1_rep	CDS	28346460	28346876	.	+	0	Parent=Os08t0565900-01
Chr08	irgsp1_rep	CDS	28346988	28347734	.	+	0	Parent=Os08t0565900-01
Chr08	irgsp1_rep	three_prime_UTR	28347735	28348010	.	+	.	Parent=Os08t0565900-01
Chr08	irgsp1_rep	mRNA	28348007	28351751	.	-	.	ID=Os08t0566000-01;Name=Os08t0566000-01;Locus_id=Os08g0566000;Note=Haem oxygenase-like%2C multi-helical domain containing protein.;Transcript_evidence=AK067576 (DDBJ%2C Best hit);ORF_evidence=Q7EZK2 (UniProt);InterPro=TENA/THI-4 protein/Coenzyme PQQ biosynthesis protein C domain (IPR004305),Haem oxygenase-like%2C multi-helical (IPR016084),HAD-like domain (IPR023214);NIAS_FLcDNA=J013108B11;Expression=AK067576;TENOR=Os08t0566000-01;KEGG=Os08t0566000-01
Chr08	irgsp1_rep	five_prime_UTR	28351596	28351751	.	-	.	Parent=Os08t0566000-01
Chr08	irgsp1_rep	CDS	28351270	28351595	.	-	0	Parent=Os08t0566000-01
Chr08	irgsp1_rep	CDS	28351075	28351183	.	-	1	Parent=Os08t0566000-01
Chr08	irgsp1_rep	CDS	28350082	28350369	.	-	0	Parent=Os08t0566000-01
Chr08	irgsp1_rep	CDS	28349557	28349968	.	-	0	Parent=Os08t0566000-01
Chr08	irgsp1_rep	CDS	28349169	28349438	.	-	2	Parent=Os08t0566000-01
Chr08	irgsp1_rep	CDS	28348374	28348798	.	-	2	Parent=Os08t0566000-01
Chr08	irgsp1_rep	three_prime_UTR	28348007	28348373	.	-	.	Parent=Os08t0566000-01
Chr08	irgsp1_rep	mRNA	28355371	28360778	.	-	.	ID=Os08t0566100-01;Name=Os08t0566100-01;Locus_id=Os08g0566100;Note=Protein of unknown function DUF239%2C plant domain containing protein.;Transcript_evidence=AK107465 (DDBJ%2C Best hit);ORF_evidence=B6SL47 (UniProt);InterPro=Glucoamylase%2C putatuve (IPR004314);NIAS_FLcDNA=002-129-A10;Expression=AK107465;TENOR=Os08t0566100-01;KEGG=Os08t0566100-01
Chr08	irgsp1_rep	five_prime_UTR	28360623	28360778	.	-	.	Parent=Os08t0566100-01
Chr08	irgsp1_rep	CDS	28360098	28360622	.	-	0	Parent=Os08t0566100-01
Chr08	irgsp1_rep	CDS	28359855	28360019	.	-	0	Parent=Os08t0566100-01
Chr08	irgsp1_rep	CDS	28356303	28356356	.	-	0	Parent=Os08t0566100-01
Chr08	irgsp1_rep	CDS	28355467	28356024	.	-	0	Parent=Os08t0566100-01
Chr08	irgsp1_rep	three_prime_UTR	28355371	28355466	.	-	.	Parent=Os08t0566100-01
Chr08	irgsp1_rep	mRNA	28355486	28360596	.	+	.	ID=Os08t0566250-00;Name=Os08t0566250-00;Locus_id=Os08g0566250;Note=Hypothetical protein.;Transcript_evidence=tplb0062i11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os08t0566250-00
Chr08	irgsp1_rep	five_prime_UTR	28355486	28356018	.	+	.	Parent=Os08t0566250-00
Chr08	irgsp1_rep	five_prime_UTR	28359795	28359870	.	+	.	Parent=Os08t0566250-00
Chr08	irgsp1_rep	CDS	28359871	28360049	.	+	0	Parent=Os08t0566250-00
Chr08	irgsp1_rep	CDS	28360121	28360280	.	+	1	Parent=Os08t0566250-00
Chr08	irgsp1_rep	three_prime_UTR	28360281	28360596	.	+	.	Parent=Os08t0566250-00
Chr08	irgsp1_rep	mRNA	28370570	28375965	.	+	.	ID=Os08t0566400-01;Name=Os08t0566400-01;Locus_id=Os08g0566400;Note=Ribokinase family protein.;Transcript_evidence=AK067804 (DDBJ%2C Best hit);ORF_evidence=XP_002869481.1 (RefSeq);GO=Biological Process: D-ribose metabolic process (GO:0006014),Molecular Function: ribokinase activity (GO:0004747),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Ribokinase (IPR002139),Carbohydrate/puine kinase%2C PfkB%2C conserved site (IPR002173),Carbohydrate/purine kinase (IPR011611);NIAS_FLcDNA=J013119N07;Expression=AK067804;TENOR=Os08t0566400-01;KEGG=Os08t0566400-01
Chr08	irgsp1_rep	five_prime_UTR	28370570	28370618	.	+	.	Parent=Os08t0566400-01
Chr08	irgsp1_rep	CDS	28370619	28370759	.	+	0	Parent=Os08t0566400-01
Chr08	irgsp1_rep	CDS	28370866	28371033	.	+	0	Parent=Os08t0566400-01
Chr08	irgsp1_rep	CDS	28371105	28371179	.	+	0	Parent=Os08t0566400-01
Chr08	irgsp1_rep	CDS	28371260	28371312	.	+	0	Parent=Os08t0566400-01
Chr08	irgsp1_rep	CDS	28371801	28371951	.	+	1	Parent=Os08t0566400-01
Chr08	irgsp1_rep	CDS	28372393	28372503	.	+	0	Parent=Os08t0566400-01
Chr08	irgsp1_rep	CDS	28373352	28373478	.	+	0	Parent=Os08t0566400-01
Chr08	irgsp1_rep	CDS	28373973	28374073	.	+	2	Parent=Os08t0566400-01
Chr08	irgsp1_rep	CDS	28374398	28374536	.	+	0	Parent=Os08t0566400-01
Chr08	irgsp1_rep	CDS	28374944	28374996	.	+	2	Parent=Os08t0566400-01
Chr08	irgsp1_rep	CDS	28375508	28375585	.	+	0	Parent=Os08t0566400-01
Chr08	irgsp1_rep	three_prime_UTR	28375586	28375965	.	+	.	Parent=Os08t0566400-01
Chr08	irgsp1_rep	mRNA	28371889	28375814	.	+	.	ID=Os08t0566400-02;Name=Os08t0566400-02;Locus_id=Os08g0566400;Note=Similar to pfkB-type carbohydrate kinase family protein.;Transcript_evidence=AK104887 (DDBJ%2C Best hit);ORF_evidence=XP_002869481.1 (RefSeq);GO=Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Carbohydrate/puine kinase%2C PfkB%2C conserved site (IPR002173),Carbohydrate/purine kinase (IPR011611);NIAS_FLcDNA=001-045-B05;Expression=AK104887;TENOR=Os08t0566400-02;KEGG=Os08t0566400-02
Chr08	irgsp1_rep	CDS	28371889	28371951	.	+	0	Parent=Os08t0566400-02
Chr08	irgsp1_rep	CDS	28372393	28372503	.	+	0	Parent=Os08t0566400-02
Chr08	irgsp1_rep	CDS	28373352	28373478	.	+	0	Parent=Os08t0566400-02
Chr08	irgsp1_rep	CDS	28373973	28374073	.	+	2	Parent=Os08t0566400-02
Chr08	irgsp1_rep	CDS	28374398	28374536	.	+	0	Parent=Os08t0566400-02
Chr08	irgsp1_rep	CDS	28374944	28374996	.	+	2	Parent=Os08t0566400-02
Chr08	irgsp1_rep	CDS	28375508	28375585	.	+	0	Parent=Os08t0566400-02
Chr08	irgsp1_rep	three_prime_UTR	28375586	28375814	.	+	.	Parent=Os08t0566400-02
Chr08	irgsp1_rep	mRNA	28377834	28378783	.	+	.	ID=Os08t0566600-01;Name=Os08t0566600-01;Locus_id=Os08g0566600;RAP-DB Gene Symbol Synonym(s)=PGR5;RAP-DB Gene Name Synonym(s)=PROTON GRADIENT REGULATION 5;CGSNL Gene Symbol=PGR5;CGSNL Gene Name=PROTON GRADIENT REGULATION 5;Oryzabase Gene Symbol Synonym(s)=OsPGR5;Note=Cyclic electron transport in photosystem I (PSI)%2C Redox homeostasis in chloroplasts;Transcript_evidence=AK061598,AK066210;ORF_evidence=Q6Z1P2;NIAS_FLcDNA=001-027-A06,J013056J23;Manual Curation=August 4%2C 2020;Literature_PMID=23161858;Oryzabase=20927;Expression=AK061598;TENOR=Os08t0566600-01;KEGG=Os08t0566600-01
Chr08	irgsp1_rep	five_prime_UTR	28377834	28377961	.	+	.	Parent=Os08t0566600-01
Chr08	irgsp1_rep	CDS	28377962	28378234	.	+	0	Parent=Os08t0566600-01
Chr08	irgsp1_rep	CDS	28378425	28378529	.	+	0	Parent=Os08t0566600-01
Chr08	irgsp1_rep	three_prime_UTR	28378530	28378783	.	+	.	Parent=Os08t0566600-01
Chr08	irgsp1_rep	mRNA	28378948	28382021	.	-	.	ID=Os08t0566700-01;Name=Os08t0566700-01;Locus_id=Os08g0566700;Note=Cullin repeat-like-containing domain domain containing protein.;Transcript_evidence=AK119354 (DDBJ%2C Best hit);ORF_evidence=A2YYA1 (UniProt);InterPro=Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=001-131-F10;Expression=AK119354;TENOR=Os08t0566700-01;KEGG=Os08t0566700-01
Chr08	irgsp1_rep	five_prime_UTR	28381586	28382021	.	-	.	Parent=Os08t0566700-01
Chr08	irgsp1_rep	five_prime_UTR	28381485	28381485	.	-	.	Parent=Os08t0566700-01
Chr08	irgsp1_rep	CDS	28380039	28381484	.	-	0	Parent=Os08t0566700-01
Chr08	irgsp1_rep	CDS	28379756	28379956	.	-	0	Parent=Os08t0566700-01
Chr08	irgsp1_rep	CDS	28379167	28379649	.	-	0	Parent=Os08t0566700-01
Chr08	irgsp1_rep	three_prime_UTR	28378948	28379166	.	-	.	Parent=Os08t0566700-01
Chr08	irgsp1_rep	mRNA	28388405	28391044	.	+	.	ID=Os08t0566900-01;Name=Os08t0566900-01;Locus_id=Os08g0566900;Note=Mpv17/PMP22 family protein.;Transcript_evidence=AK100851 (DDBJ%2C Best hit);ORF_evidence=B6SRR1 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Mpv17/PMP22 (IPR007248);NIAS_FLcDNA=J023123J02;Expression=AK100851;TENOR=Os08t0566900-01;KEGG=Os08t0566900-01
Chr08	irgsp1_rep	five_prime_UTR	28388405	28388489	.	+	.	Parent=Os08t0566900-01
Chr08	irgsp1_rep	CDS	28388490	28388660	.	+	0	Parent=Os08t0566900-01
Chr08	irgsp1_rep	CDS	28389039	28389138	.	+	0	Parent=Os08t0566900-01
Chr08	irgsp1_rep	CDS	28389309	28389386	.	+	2	Parent=Os08t0566900-01
Chr08	irgsp1_rep	CDS	28390167	28390237	.	+	2	Parent=Os08t0566900-01
Chr08	irgsp1_rep	CDS	28390617	28390702	.	+	0	Parent=Os08t0566900-01
Chr08	irgsp1_rep	CDS	28390806	28390863	.	+	1	Parent=Os08t0566900-01
Chr08	irgsp1_rep	three_prime_UTR	28390864	28391044	.	+	.	Parent=Os08t0566900-01
Chr08	irgsp1_rep	mRNA	28393985	28399050	.	+	.	ID=Os08t0567000-01;Name=Os08t0567000-01;Locus_id=Os08g0567000;Note=Conserved hypothetical protein.;Transcript_evidence=AK065186 (DDBJ%2C Best hit);ORF_evidence=Q6Z1N4 (UniProt);NIAS_FLcDNA=J013002D24;Expression=AK065186;TENOR=Os08t0567000-01;KEGG=Os08t0567000-01
Chr08	irgsp1_rep	five_prime_UTR	28393985	28394188	.	+	.	Parent=Os08t0567000-01
Chr08	irgsp1_rep	CDS	28394189	28394284	.	+	0	Parent=Os08t0567000-01
Chr08	irgsp1_rep	CDS	28394362	28394427	.	+	0	Parent=Os08t0567000-01
Chr08	irgsp1_rep	CDS	28394596	28394691	.	+	0	Parent=Os08t0567000-01
Chr08	irgsp1_rep	CDS	28394776	28394851	.	+	0	Parent=Os08t0567000-01
Chr08	irgsp1_rep	CDS	28394933	28395019	.	+	2	Parent=Os08t0567000-01
Chr08	irgsp1_rep	CDS	28395126	28395214	.	+	2	Parent=Os08t0567000-01
Chr08	irgsp1_rep	CDS	28395283	28395375	.	+	0	Parent=Os08t0567000-01
Chr08	irgsp1_rep	CDS	28397631	28397768	.	+	0	Parent=Os08t0567000-01
Chr08	irgsp1_rep	CDS	28397951	28398056	.	+	0	Parent=Os08t0567000-01
Chr08	irgsp1_rep	CDS	28398442	28398638	.	+	2	Parent=Os08t0567000-01
Chr08	irgsp1_rep	CDS	28398763	28398831	.	+	0	Parent=Os08t0567000-01
Chr08	irgsp1_rep	three_prime_UTR	28398832	28399050	.	+	.	Parent=Os08t0567000-01
Chr08	irgsp1_rep	mRNA	28399648	28400868	.	+	.	ID=Os08t0567100-01;Name=Os08t0567100-01;Locus_id=Os08g0567100;Note=Epsin domain%2C N-terminal domain containing protein.;Transcript_evidence=AK072895 (DDBJ%2C Best hit);ORF_evidence=A3BVW2 (UniProt);InterPro=Epsin domain%2C N-terminal (IPR001026),ENTH/VHS (IPR008942),Epsin-like%2C N-terminal (IPR013809);NIAS_FLcDNA=J023148G19;TENOR=Os08t0567100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr08	irgsp1_rep	five_prime_UTR	28399648	28399649	.	+	.	Parent=Os08t0567100-01
Chr08	irgsp1_rep	CDS	28399650	28400687	.	+	0	Parent=Os08t0567100-01
Chr08	irgsp1_rep	three_prime_UTR	28400688	28400868	.	+	.	Parent=Os08t0567100-01
Chr08	irgsp1_rep	mRNA	28401037	28408913	.	-	.	ID=Os08t0567200-01;Name=Os08t0567200-01;Locus_id=Os08g0567200;Note=RNA recognition motif-related domain containing protein.;Transcript_evidence=AK061692 (DDBJ%2C Best hit);ORF_evidence=NP_187100.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-037-C04;TENOR=Os08t0567200-01
Chr08	irgsp1_rep	five_prime_UTR	28408840	28408913	.	-	.	Parent=Os08t0567200-01
Chr08	irgsp1_rep	CDS	28408467	28408839	.	-	0	Parent=Os08t0567200-01
Chr08	irgsp1_rep	CDS	28408287	28408384	.	-	2	Parent=Os08t0567200-01
Chr08	irgsp1_rep	CDS	28407604	28407700	.	-	0	Parent=Os08t0567200-01
Chr08	irgsp1_rep	CDS	28407432	28407517	.	-	2	Parent=Os08t0567200-01
Chr08	irgsp1_rep	CDS	28407298	28407351	.	-	0	Parent=Os08t0567200-01
Chr08	irgsp1_rep	three_prime_UTR	28407260	28407297	.	-	.	Parent=Os08t0567200-01
Chr08	irgsp1_rep	three_prime_UTR	28401037	28401379	.	-	.	Parent=Os08t0567200-01
Chr08	irgsp1_rep	mRNA	28401039	28408769	.	-	.	ID=Os08t0567200-02;Name=Os08t0567200-02;Locus_id=Os08g0567200;Note=Similar to RNA recognition motif (RRM)-containing protein.;Transcript_evidence=AK067161 (DDBJ%2C Best hit);ORF_evidence=NP_187100.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013094H15;TENOR=Os08t0567200-02
Chr08	irgsp1_rep	five_prime_UTR	28408732	28408769	.	-	.	Parent=Os08t0567200-02
Chr08	irgsp1_rep	CDS	28408467	28408731	.	-	0	Parent=Os08t0567200-02
Chr08	irgsp1_rep	CDS	28408287	28408384	.	-	2	Parent=Os08t0567200-02
Chr08	irgsp1_rep	CDS	28407604	28407700	.	-	0	Parent=Os08t0567200-02
Chr08	irgsp1_rep	CDS	28407432	28407517	.	-	2	Parent=Os08t0567200-02
Chr08	irgsp1_rep	CDS	28407298	28407351	.	-	0	Parent=Os08t0567200-02
Chr08	irgsp1_rep	three_prime_UTR	28407260	28407297	.	-	.	Parent=Os08t0567200-02
Chr08	irgsp1_rep	three_prime_UTR	28401039	28401379	.	-	.	Parent=Os08t0567200-02
Chr09	irgsp1_rep	mRNA	145181	145517	.	+	.	ID=Os09t0100750-01;Name=Os09t0100750-01;Locus_id=Os09g0100750;Note=Hypothetical gene.;Transcript_evidence=AK242448 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J080095N14;TENOR=Os09t0100750-01;KEGG=Os09t0100750-01
Chr09	irgsp1_rep	CDS	145181	145414	.	+	0	Parent=Os09t0100750-01
Chr09	irgsp1_rep	three_prime_UTR	145415	145517	.	+	.	Parent=Os09t0100750-01
Chr09	irgsp1_rep	mRNA	147568	152791	.	-	.	ID=Os09t0100800-01;Name=Os09t0100800-01;Locus_id=Os09g0100800;Note=Protein of unknown function DUF573 domain containing protein.;Transcript_evidence=AK072386 (DDBJ%2C Best hit);ORF_evidence=B9F825 (UniProt);InterPro=Protein of unknown function DUF573 (IPR007592);NIAS_FLcDNA=J023081P06;Expression=AK072386;TENOR=Os09t0100800-01;KEGG=Os09t0100800-01
Chr09	irgsp1_rep	five_prime_UTR	152606	152791	.	-	.	Parent=Os09t0100800-01
Chr09	irgsp1_rep	CDS	151832	152605	.	-	0	Parent=Os09t0100800-01
Chr09	irgsp1_rep	CDS	150018	150260	.	-	0	Parent=Os09t0100800-01
Chr09	irgsp1_rep	CDS	149855	149923	.	-	0	Parent=Os09t0100800-01
Chr09	irgsp1_rep	CDS	149659	149766	.	-	0	Parent=Os09t0100800-01
Chr09	irgsp1_rep	three_prime_UTR	149572	149658	.	-	.	Parent=Os09t0100800-01
Chr09	irgsp1_rep	three_prime_UTR	149237	149320	.	-	.	Parent=Os09t0100800-01
Chr09	irgsp1_rep	three_prime_UTR	149097	149150	.	-	.	Parent=Os09t0100800-01
Chr09	irgsp1_rep	three_prime_UTR	148773	149003	.	-	.	Parent=Os09t0100800-01
Chr09	irgsp1_rep	three_prime_UTR	148635	148689	.	-	.	Parent=Os09t0100800-01
Chr09	irgsp1_rep	three_prime_UTR	147568	147819	.	-	.	Parent=Os09t0100800-01
Chr09	irgsp1_rep	mRNA	244493	248804	.	-	.	ID=Os09t0101100-01;Name=Os09t0101100-01;Locus_id=Os09g0101100;Note=HhH-GPD domain domain containing protein.;Transcript_evidence=AK120565 (DDBJ%2C Best hit);ORF_evidence=B9G222 (UniProt);GO=Biological Process: DNA repair (GO:0006281),Biological Process: base-excision repair (GO:0006284),Molecular Function: catalytic activity (GO:0003824);InterPro=HhH-GPD domain (IPR003265),DNA glycosylase (IPR011257);NIAS_FLcDNA=J013133J10;Expression=AK120565;TENOR=Os09t0101100-01;KEGG=Os09t0101100-01 (EC:3.2.2.-)
Chr09	irgsp1_rep	five_prime_UTR	248782	248804	.	-	.	Parent=Os09t0101100-01
Chr09	irgsp1_rep	CDS	247822	248781	.	-	0	Parent=Os09t0101100-01
Chr09	irgsp1_rep	CDS	247164	247360	.	-	0	Parent=Os09t0101100-01
Chr09	irgsp1_rep	CDS	246896	247064	.	-	1	Parent=Os09t0101100-01
Chr09	irgsp1_rep	three_prime_UTR	244493	246895	.	-	.	Parent=Os09t0101100-01
Chr09	irgsp1_rep	mRNA	251259	252929	.	-	.	ID=Os09t0101200-00;Name=Os09t0101200-00;Locus_id=Os09g0101200;Note=Similar to Transposon protein.;Transcript_evidence=EU975121 (DDBJ);ORF_evidence=NP_001159087.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein dimerization activity (GO:0046983);InterPro=HAT dimerisation (IPR008906),Ribonuclease H-like (IPR012337);TENOR=Os09t0101200-00;KEGG=Os09t0101200-00
Chr09	irgsp1_rep	CDS	251259	252929	.	-	0	Parent=Os09t0101200-00
Chr09	irgsp1_rep	mRNA	259697	260752	.	-	.	ID=Os09t0101300-00;Name=Os09t0101300-00;Locus_id=Os09g0101300;Note=Conserved hypothetical protein.;Transcript_evidence=BT065905 (DDBJ);ORF_evidence=Q69K27 (UniProt);TENOR=Os09t0101300-00
Chr09	irgsp1_rep	CDS	259697	260752	.	-	0	Parent=Os09t0101300-00
Chr09	irgsp1_rep	mRNA	286246	297374	.	-	.	ID=Os09t0101800-01;Name=Os09t0101800-01;Locus_id=Os09g0101800;Note=Quinoprotein amine dehydrogenase%2C beta chain-like domain containing protein.;Transcript_evidence=AK102345 (DDBJ%2C Best hit);ORF_evidence=B9G224 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: protein binding (GO:0005515);InterPro=FY-rich%2C C-terminal (IPR003889),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943);NIAS_FLcDNA=J033091B21;Expression=AK102345;TENOR=Os09t0101800-01;KEGG=Os09t0101800-01
Chr09	irgsp1_rep	five_prime_UTR	297368	297374	.	-	.	Parent=Os09t0101800-01
Chr09	irgsp1_rep	CDS	297269	297367	.	-	0	Parent=Os09t0101800-01
Chr09	irgsp1_rep	CDS	297064	297171	.	-	0	Parent=Os09t0101800-01
Chr09	irgsp1_rep	CDS	296848	296985	.	-	0	Parent=Os09t0101800-01
Chr09	irgsp1_rep	CDS	295836	296150	.	-	0	Parent=Os09t0101800-01
Chr09	irgsp1_rep	CDS	294592	294928	.	-	0	Parent=Os09t0101800-01
Chr09	irgsp1_rep	CDS	293131	294395	.	-	2	Parent=Os09t0101800-01
Chr09	irgsp1_rep	CDS	292959	293044	.	-	0	Parent=Os09t0101800-01
Chr09	irgsp1_rep	CDS	292654	292872	.	-	1	Parent=Os09t0101800-01
Chr09	irgsp1_rep	CDS	289796	289924	.	-	1	Parent=Os09t0101800-01
Chr09	irgsp1_rep	CDS	288664	289008	.	-	1	Parent=Os09t0101800-01
Chr09	irgsp1_rep	CDS	287000	287115	.	-	1	Parent=Os09t0101800-01
Chr09	irgsp1_rep	CDS	286425	286567	.	-	2	Parent=Os09t0101800-01
Chr09	irgsp1_rep	three_prime_UTR	286246	286424	.	-	.	Parent=Os09t0101800-01
Chr09	irgsp1_rep	mRNA	344978	345565	.	+	.	ID=Os09t0102300-00;Name=Os09t0102300-00;Locus_id=Os09g0102300;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q69K16 (UniProt);TENOR=Os09t0102300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	344978	345565	.	+	0	Parent=Os09t0102300-00
Chr09	irgsp1_rep	mRNA	410636	419180	.	+	.	ID=Os09t0103100-01;Name=Os09t0103100-01;Locus_id=Os09g0103100;Note=Similar to predicted protein.;Transcript_evidence=AK243532 (DDBJ%2C Best hit);ORF_evidence=XP_002883884.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629);InterPro=Partial AB-hydrolase lipase domain (IPR006693);NIAS_FLcDNA=J100077E15;TENOR=Os09t0103100-01;KEGG=Os09t0103100-01
Chr09	irgsp1_rep	five_prime_UTR	410636	410685	.	+	.	Parent=Os09t0103100-01
Chr09	irgsp1_rep	CDS	410686	410871	.	+	0	Parent=Os09t0103100-01
Chr09	irgsp1_rep	CDS	413501	413611	.	+	0	Parent=Os09t0103100-01
Chr09	irgsp1_rep	CDS	413808	413948	.	+	0	Parent=Os09t0103100-01
Chr09	irgsp1_rep	CDS	415300	415410	.	+	0	Parent=Os09t0103100-01
Chr09	irgsp1_rep	CDS	415494	415637	.	+	0	Parent=Os09t0103100-01
Chr09	irgsp1_rep	CDS	415724	415764	.	+	0	Parent=Os09t0103100-01
Chr09	irgsp1_rep	CDS	415842	415921	.	+	1	Parent=Os09t0103100-01
Chr09	irgsp1_rep	CDS	416992	417087	.	+	2	Parent=Os09t0103100-01
Chr09	irgsp1_rep	CDS	418690	419012	.	+	2	Parent=Os09t0103100-01
Chr09	irgsp1_rep	three_prime_UTR	419013	419180	.	+	.	Parent=Os09t0103100-01
Chr09	irgsp1_rep	mRNA	410685	419066	.	-	.	ID=Os09t0103150-00;Name=Os09t0103150-00;Locus_id=Os09g0103150;Note=Hypothetical protein.;Transcript_evidence=tplb0061b16 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0103150-00
Chr09	irgsp1_rep	five_prime_UTR	418604	419066	.	-	.	Parent=Os09t0103150-00
Chr09	irgsp1_rep	five_prime_UTR	416791	417286	.	-	.	Parent=Os09t0103150-00
Chr09	irgsp1_rep	five_prime_UTR	415722	416674	.	-	.	Parent=Os09t0103150-00
Chr09	irgsp1_rep	five_prime_UTR	415492	415635	.	-	.	Parent=Os09t0103150-00
Chr09	irgsp1_rep	five_prime_UTR	415277	415408	.	-	.	Parent=Os09t0103150-00
Chr09	irgsp1_rep	five_prime_UTR	413821	413929	.	-	.	Parent=Os09t0103150-00
Chr09	irgsp1_rep	CDS	413799	413820	.	-	0	Parent=Os09t0103150-00
Chr09	irgsp1_rep	CDS	413509	413602	.	-	2	Parent=Os09t0103150-00
Chr09	irgsp1_rep	CDS	410685	410879	.	-	1	Parent=Os09t0103150-00
Chr09	irgsp1_rep	mRNA	422297	427050	.	+	.	ID=Os09t0103200-01;Name=Os09t0103200-01;Locus_id=Os09g0103200;Note=Conserved hypothetical protein.;Transcript_evidence=AK068527 (DDBJ%2C Best hit);ORF_evidence=B9G226 (UniProt);NIAS_FLcDNA=J013155H09;TENOR=Os09t0103200-01
Chr09	irgsp1_rep	five_prime_UTR	422297	422507	.	+	.	Parent=Os09t0103200-01
Chr09	irgsp1_rep	five_prime_UTR	423731	423781	.	+	.	Parent=Os09t0103200-01
Chr09	irgsp1_rep	CDS	423782	423785	.	+	0	Parent=Os09t0103200-01
Chr09	irgsp1_rep	CDS	424181	424268	.	+	2	Parent=Os09t0103200-01
Chr09	irgsp1_rep	CDS	424375	424449	.	+	1	Parent=Os09t0103200-01
Chr09	irgsp1_rep	CDS	424846	424879	.	+	1	Parent=Os09t0103200-01
Chr09	irgsp1_rep	CDS	424947	426420	.	+	0	Parent=Os09t0103200-01
Chr09	irgsp1_rep	CDS	426662	426678	.	+	2	Parent=Os09t0103200-01
Chr09	irgsp1_rep	three_prime_UTR	426679	426727	.	+	.	Parent=Os09t0103200-01
Chr09	irgsp1_rep	three_prime_UTR	426866	427050	.	+	.	Parent=Os09t0103200-01
Chr09	irgsp1_rep	mRNA	428611	429430	.	+	.	ID=Os09t0103300-01;Name=Os09t0103300-01;Locus_id=Os09g0103300;Note=Conserved hypothetical protein.;Transcript_evidence=AK062317 (DDBJ%2C Best hit);ORF_evidence=Q657Y0 (UniProt);NIAS_FLcDNA=001-101-C05;TENOR=Os09t0103300-01
Chr09	irgsp1_rep	five_prime_UTR	428611	428797	.	+	.	Parent=Os09t0103300-01
Chr09	irgsp1_rep	five_prime_UTR	429030	429047	.	+	.	Parent=Os09t0103300-01
Chr09	irgsp1_rep	CDS	429048	429208	.	+	0	Parent=Os09t0103300-01
Chr09	irgsp1_rep	CDS	429315	429430	.	+	1	Parent=Os09t0103300-01
Chr09	irgsp1_rep	mRNA	429888	432329	.	-	.	ID=Os09t0103400-01;Name=Os09t0103400-01;Locus_id=Os09g0103400;CGSNL Gene Symbol=MIR2055;CGSNL Gene Name=MICRORNA2055;Oryzabase Gene Symbol Synonym(s)=miR2055%2C OsmiR2055%2C osa-miR2055%2C osa-MIR2055;Oryzabase Gene Name Synonym(s)=microRNA1425%2C osa-miRNA1425;Note=Conserved hypothetical protein.;Transcript_evidence=AK064377 (DDBJ%2C Best hit);ORF_evidence=A3BVX5 (UniProt);NIAS_FLcDNA=002-108-D08;Oryzabase=8532;Expression=AK064377;TENOR=Os09t0103400-01;KEGG=Os09t0103400-01
Chr09	irgsp1_rep	five_prime_UTR	432253	432329	.	-	.	Parent=Os09t0103400-01
Chr09	irgsp1_rep	CDS	431257	432252	.	-	0	Parent=Os09t0103400-01
Chr09	irgsp1_rep	three_prime_UTR	431248	431256	.	-	.	Parent=Os09t0103400-01
Chr09	irgsp1_rep	three_prime_UTR	429888	430171	.	-	.	Parent=Os09t0103400-01
Chr09	irgsp1_rep	mRNA	437172	442919	.	+	.	ID=Os09t0103500-01;Name=Os09t0103500-01;Locus_id=Os09g0103500;Note=Pseudouridine synthase domain containing protein.;Transcript_evidence=AK065573 (DDBJ%2C Best hit);ORF_evidence=B6U2M4 (UniProt);GO=Biological Process: pseudouridine synthesis (GO:0001522),Biological Process: RNA modification (GO:0009451),Molecular Function: RNA binding (GO:0003723),Molecular Function: pseudouridine synthase activity (GO:0009982);InterPro=Pseudouridine synthase%2C RsuA and RluB/C/D/E/F (IPR006145),Pseudouridine synthase%2C catalytic domain (IPR020103);NIAS_FLcDNA=J013029D18;Expression=AK065573;TENOR=Os09t0103500-01;KEGG=Os09t0103500-01
Chr09	irgsp1_rep	five_prime_UTR	437172	437208	.	+	.	Parent=Os09t0103500-01
Chr09	irgsp1_rep	CDS	437209	437538	.	+	0	Parent=Os09t0103500-01
Chr09	irgsp1_rep	CDS	437695	437766	.	+	0	Parent=Os09t0103500-01
Chr09	irgsp1_rep	CDS	438802	438942	.	+	0	Parent=Os09t0103500-01
Chr09	irgsp1_rep	CDS	439025	439072	.	+	0	Parent=Os09t0103500-01
Chr09	irgsp1_rep	CDS	439151	439228	.	+	0	Parent=Os09t0103500-01
Chr09	irgsp1_rep	CDS	439713	439826	.	+	0	Parent=Os09t0103500-01
Chr09	irgsp1_rep	CDS	439949	440041	.	+	0	Parent=Os09t0103500-01
Chr09	irgsp1_rep	CDS	441067	441178	.	+	0	Parent=Os09t0103500-01
Chr09	irgsp1_rep	CDS	442247	442293	.	+	2	Parent=Os09t0103500-01
Chr09	irgsp1_rep	CDS	442423	442734	.	+	0	Parent=Os09t0103500-01
Chr09	irgsp1_rep	three_prime_UTR	442735	442919	.	+	.	Parent=Os09t0103500-01
Chr09	irgsp1_rep	mRNA	444925	451698	.	-	.	ID=Os09t0103600-01;Name=Os09t0103600-01;Locus_id=Os09g0103600;Note=PRP38 family protein.;Transcript_evidence=AK064099 (DDBJ%2C Best hit);ORF_evidence=B6TYH0 (UniProt);InterPro=Pre-mRNA-splicing factor 38 (IPR005037),Pre-mRNA-splicing factor 38%2C C-terminal (IPR024767);NIAS_FLcDNA=002-100-H10;Expression=AK064099;TENOR=Os09t0103600-01;KEGG=Os09t0103600-01
Chr09	irgsp1_rep	five_prime_UTR	451592	451698	.	-	.	Parent=Os09t0103600-01
Chr09	irgsp1_rep	CDS	451302	451591	.	-	0	Parent=Os09t0103600-01
Chr09	irgsp1_rep	CDS	451086	451207	.	-	1	Parent=Os09t0103600-01
Chr09	irgsp1_rep	CDS	450915	451005	.	-	2	Parent=Os09t0103600-01
Chr09	irgsp1_rep	CDS	448107	448236	.	-	1	Parent=Os09t0103600-01
Chr09	irgsp1_rep	CDS	447954	448024	.	-	0	Parent=Os09t0103600-01
Chr09	irgsp1_rep	CDS	445068	445542	.	-	1	Parent=Os09t0103600-01
Chr09	irgsp1_rep	three_prime_UTR	444925	445067	.	-	.	Parent=Os09t0103600-01
Chr09	irgsp1_rep	mRNA	456264	457723	.	+	.	ID=Os09t0103700-01;Name=Os09t0103700-01;Locus_id=Os09g0103700;Note=Zinc finger%2C CCHC-type domain containing protein.;Transcript_evidence=AK071092 (DDBJ%2C Best hit);ORF_evidence=B6TD23 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878);NIAS_FLcDNA=J023079K08;Expression=AK071092;TENOR=Os09t0103700-01;KEGG=Os09t0103700-01
Chr09	irgsp1_rep	five_prime_UTR	456264	456365	.	+	.	Parent=Os09t0103700-01
Chr09	irgsp1_rep	CDS	456366	457499	.	+	0	Parent=Os09t0103700-01
Chr09	irgsp1_rep	three_prime_UTR	457500	457723	.	+	.	Parent=Os09t0103700-01
Chr09	irgsp1_rep	mRNA	467011	472617	.	+	.	ID=Os09t0103800-00;Name=Os09t0103800-00;Locus_id=Os09g0103800;Oryzabase Gene Symbol Synonym(s)=OsFKBP59;Oryzabase Gene Name Synonym(s)=FK506 binding protein 59;Note=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type%2C domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q69K03 (UniProt);GO=Biological Process: protein folding (GO:0006457);InterPro=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type%2C domain (IPR001179),Peptidyl-prolyl cis-trans isomerase%2C FKBP-type (IPR023566);Oryzabase=10046;TENOR=Os09t0103800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	467011	467026	.	+	0	Parent=Os09t0103800-00
Chr09	irgsp1_rep	CDS	467155	467222	.	+	2	Parent=Os09t0103800-00
Chr09	irgsp1_rep	CDS	468137	468432	.	+	0	Parent=Os09t0103800-00
Chr09	irgsp1_rep	CDS	468548	468688	.	+	1	Parent=Os09t0103800-00
Chr09	irgsp1_rep	CDS	468772	468854	.	+	1	Parent=Os09t0103800-00
Chr09	irgsp1_rep	CDS	469802	469916	.	+	2	Parent=Os09t0103800-00
Chr09	irgsp1_rep	CDS	470043	470135	.	+	1	Parent=Os09t0103800-00
Chr09	irgsp1_rep	CDS	470251	470309	.	+	1	Parent=Os09t0103800-00
Chr09	irgsp1_rep	CDS	470897	470972	.	+	2	Parent=Os09t0103800-00
Chr09	irgsp1_rep	CDS	471338	471490	.	+	1	Parent=Os09t0103800-00
Chr09	irgsp1_rep	CDS	471582	471768	.	+	1	Parent=Os09t0103800-00
Chr09	irgsp1_rep	CDS	472040	472127	.	+	0	Parent=Os09t0103800-00
Chr09	irgsp1_rep	CDS	472210	472251	.	+	2	Parent=Os09t0103800-00
Chr09	irgsp1_rep	CDS	472365	472413	.	+	2	Parent=Os09t0103800-00
Chr09	irgsp1_rep	CDS	472521	472617	.	+	1	Parent=Os09t0103800-00
Chr09	irgsp1_rep	mRNA	485020	490803	.	-	.	ID=Os09t0104200-01;Name=Os09t0104200-01;Locus_id=Os09g0104200;RAP-DB Gene Symbol Synonym(s)=RAD51D%2C OsRAD51D.2%2C OsRAD51D%2C OsRad51D;RAP-DB Gene Name Synonym(s)=DNA REPAIR PROTEIN RAD51D%2C DNA repair protein RAD51D;CGSNL Gene Symbol=RAD51D;CGSNL Gene Name=DNA REPAIR PROTEIN RAD51D;Oryzabase Gene Symbol Synonym(s)=OsRAD51D%2C OsRad51D%2C OsRAD51D.1%2C OsRAD51D.2%2C OsRAD51D.3;Oryzabase Gene Name Synonym(s)=DNA repair protein RAD51D;Note=DNA repair protein%2C Splicing variant with unknown function;Transcript_evidence=KJ472481;ORF_evidence=A0A075DNI4;GO=Biological Process: DNA metabolic process (GO:0006259),Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP binding (GO:0005524),Molecular Function: DNA-dependent ATPase activity (GO:0008094);InterPro=DNA recombination and repair protein RecA-like%2C ATP-binding domain (IPR020588),DNA recombination and repair protein Rad51%2C C-terminal (IPR013632),P-loop containing nucleoside triphosphate hydrolase (IPR027417);Manual Curation=January 20%2C 2015;Literature_PMID=24840804;Oryzabase=11617;TENOR=Os09t0104200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	490713	490803	.	-	.	Parent=Os09t0104200-01
Chr09	irgsp1_rep	five_prime_UTR	490458	490483	.	-	.	Parent=Os09t0104200-01
Chr09	irgsp1_rep	CDS	490366	490457	.	-	0	Parent=Os09t0104200-01
Chr09	irgsp1_rep	CDS	490120	490201	.	-	1	Parent=Os09t0104200-01
Chr09	irgsp1_rep	CDS	489811	489945	.	-	0	Parent=Os09t0104200-01
Chr09	irgsp1_rep	CDS	489496	489609	.	-	0	Parent=Os09t0104200-01
Chr09	irgsp1_rep	CDS	489300	489431	.	-	0	Parent=Os09t0104200-01
Chr09	irgsp1_rep	three_prime_UTR	487550	489299	.	-	.	Parent=Os09t0104200-01
Chr09	irgsp1_rep	three_prime_UTR	485020	485387	.	-	.	Parent=Os09t0104200-01
Chr09	irgsp1_rep	mRNA	485012	490816	.	-	.	ID=Os09t0104200-02;Name=Os09t0104200-02;Locus_id=Os09g0104200;RAP-DB Gene Symbol Synonym(s)=RAD51D%2C OsRAD51D.1%2C OsRAD51D%2C OsRad51D;RAP-DB Gene Name Synonym(s)=DNA REPAIR PROTEIN RAD51D%2C DNA repair protein RAD51D;CGSNL Gene Symbol=RAD51D;CGSNL Gene Name=DNA REPAIR PROTEIN RAD51D;Oryzabase Gene Symbol Synonym(s)=OsRAD51D%2C OsRad51D%2C OsRAD51D.1%2C OsRAD51D.2%2C OsRAD51D.3;Oryzabase Gene Name Synonym(s)=DNA repair protein RAD51D;Note=DNA repair protein%2C Meiosis and floral development;Transcript_evidence=KJ472480;ORF_evidence=A0A075DNI2;GO=Biological Process: DNA metabolic process (GO:0006259),Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP binding (GO:0005524),Molecular Function: DNA-dependent ATPase activity (GO:0008094);InterPro=DNA recombination and repair protein RecA-like%2C ATP-binding domain (IPR020588),DNA recombination and repair protein Rad51%2C C-terminal (IPR013632),P-loop containing nucleoside triphosphate hydrolase (IPR027417);Manual Curation=January 20%2C 2015;Literature_PMID=24840804;Oryzabase=11617
Chr09	irgsp1_rep	five_prime_UTR	490785	490816	.	-	.	Parent=Os09t0104200-02
Chr09	irgsp1_rep	CDS	490713	490784	.	-	0	Parent=Os09t0104200-02
Chr09	irgsp1_rep	CDS	490383	490483	.	-	0	Parent=Os09t0104200-02
Chr09	irgsp1_rep	CDS	490120	490201	.	-	1	Parent=Os09t0104200-02
Chr09	irgsp1_rep	CDS	489811	489945	.	-	0	Parent=Os09t0104200-02
Chr09	irgsp1_rep	CDS	489496	489609	.	-	0	Parent=Os09t0104200-02
Chr09	irgsp1_rep	CDS	489341	489431	.	-	0	Parent=Os09t0104200-02
Chr09	irgsp1_rep	CDS	488902	488972	.	-	2	Parent=Os09t0104200-02
Chr09	irgsp1_rep	CDS	487550	487696	.	-	0	Parent=Os09t0104200-02
Chr09	irgsp1_rep	CDS	485349	485387	.	-	0	Parent=Os09t0104200-02
Chr09	irgsp1_rep	three_prime_UTR	485012	485348	.	-	.	Parent=Os09t0104200-02
Chr09	irgsp1_rep	mRNA	485012	490816	.	-	.	ID=Os09t0104200-03;Name=Os09t0104200-03;Locus_id=Os09g0104200;RAP-DB Gene Symbol Synonym(s)=RAD51D%2C OsRAD51D.3%2C OsRAD51D%2C OsRad51D;RAP-DB Gene Name Synonym(s)=DNA REPAIR PROTEIN RAD51D%2C DNA repair protein RAD51D;CGSNL Gene Symbol=RAD51D;CGSNL Gene Name=DNA REPAIR PROTEIN RAD51D;Oryzabase Gene Symbol Synonym(s)=OsRAD51D%2C OsRad51D%2C OsRAD51D.1%2C OsRAD51D.2%2C OsRAD51D.3;Oryzabase Gene Name Synonym(s)=DNA repair protein RAD51D;Note=DNA repair protein%2C Splicing variant with unknown function;Transcript_evidence=KJ472482;ORF_evidence=A0A075DNI1;GO=Biological Process: DNA metabolic process (GO:0006259),Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP binding (GO:0005524),Molecular Function: DNA-dependent ATPase activity (GO:0008094);InterPro=DNA recombination and repair protein RecA-like%2C ATP-binding domain (IPR020588),DNA recombination and repair protein Rad51%2C C-terminal (IPR013632),P-loop containing nucleoside triphosphate hydrolase (IPR027417);Manual Curation=January 20%2C 2015;Literature_PMID=24840804;Oryzabase=11617
Chr09	irgsp1_rep	five_prime_UTR	490713	490816	.	-	.	Parent=Os09t0104200-03
Chr09	irgsp1_rep	five_prime_UTR	490458	490483	.	-	.	Parent=Os09t0104200-03
Chr09	irgsp1_rep	CDS	490366	490457	.	-	0	Parent=Os09t0104200-03
Chr09	irgsp1_rep	CDS	490120	490201	.	-	1	Parent=Os09t0104200-03
Chr09	irgsp1_rep	CDS	489811	489945	.	-	0	Parent=Os09t0104200-03
Chr09	irgsp1_rep	CDS	489496	489609	.	-	0	Parent=Os09t0104200-03
Chr09	irgsp1_rep	CDS	489341	489431	.	-	0	Parent=Os09t0104200-03
Chr09	irgsp1_rep	CDS	488902	488972	.	-	2	Parent=Os09t0104200-03
Chr09	irgsp1_rep	CDS	487550	487696	.	-	0	Parent=Os09t0104200-03
Chr09	irgsp1_rep	CDS	485349	485387	.	-	0	Parent=Os09t0104200-03
Chr09	irgsp1_rep	three_prime_UTR	485012	485348	.	-	.	Parent=Os09t0104200-03
Chr09	irgsp1_rep	mRNA	490959	493966	.	+	.	ID=Os09t0104300-01;Name=Os09t0104300-01;Locus_id=Os09g0104300;Note=Protein of unknown function DUF1168 family protein.;Transcript_evidence=AK072803 (DDBJ%2C Best hit);ORF_evidence=NP_001150356.1 (RefSeq);InterPro=Protein of unknown function DUF1168 (IPR009548);NIAS_FLcDNA=J023139J24;Expression=AK072803;TENOR=Os09t0104300-01;KEGG=Os09t0104300-01
Chr09	irgsp1_rep	five_prime_UTR	490959	491070	.	+	.	Parent=Os09t0104300-01
Chr09	irgsp1_rep	five_prime_UTR	491558	491575	.	+	.	Parent=Os09t0104300-01
Chr09	irgsp1_rep	CDS	491576	491830	.	+	0	Parent=Os09t0104300-01
Chr09	irgsp1_rep	CDS	493367	493639	.	+	0	Parent=Os09t0104300-01
Chr09	irgsp1_rep	three_prime_UTR	493640	493966	.	+	.	Parent=Os09t0104300-01
Chr09	irgsp1_rep	mRNA	494771	497572	.	-	.	ID=Os09t0104700-00;Name=Os09t0104700-00;Locus_id=Os09g0104700;Note=Conserved hypothetical protein.;Transcript_evidence=EU951490 (DDBJ);ORF_evidence=Q69KV2 (UniProt);TENOR=Os09t0104700-00
Chr09	irgsp1_rep	CDS	494816	497572	.	-	0	Parent=Os09t0104700-00
Chr09	irgsp1_rep	three_prime_UTR	494771	494815	.	-	.	Parent=Os09t0104700-00
Chr09	irgsp1_rep	mRNA	623355	624458	.	-	.	ID=Os09t0106200-01;Name=Os09t0106200-01;Locus_id=Os09g0106200;Note=Similar to Ps16 protein.;Transcript_evidence=AK070749 (DDBJ%2C Best hit);ORF_evidence=O23798 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023064A16;Expression=AK070749;TENOR=Os09t0106200-01;KEGG=Os09t0106200-01
Chr09	irgsp1_rep	five_prime_UTR	624141	624458	.	-	.	Parent=Os09t0106200-01
Chr09	irgsp1_rep	CDS	623946	624140	.	-	0	Parent=Os09t0106200-01
Chr09	irgsp1_rep	CDS	623571	623582	.	-	0	Parent=Os09t0106200-01
Chr09	irgsp1_rep	three_prime_UTR	623355	623570	.	-	.	Parent=Os09t0106200-01
Chr09	irgsp1_rep	mRNA	656788	658373	.	-	.	ID=Os09t0106700-01;Name=Os09t0106700-01;Locus_id=Os09g0106700;Oryzabase Gene Symbol Synonym(s)=R2R3-MYB;Note=Similar to Myb proto-oncogene protein (C-myb).;Transcript_evidence=AK066141 (DDBJ%2C Best hit);ORF_evidence=NP_001151336.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J013055K23;Oryzabase=16304;Expression=AK066141;TENOR=Os09t0106700-01;KEGG=Os09t0106700-01
Chr09	irgsp1_rep	five_prime_UTR	658249	658373	.	-	.	Parent=Os09t0106700-01
Chr09	irgsp1_rep	CDS	657289	658248	.	-	0	Parent=Os09t0106700-01
Chr09	irgsp1_rep	three_prime_UTR	656788	657288	.	-	.	Parent=Os09t0106700-01
Chr09	irgsp1_rep	mRNA	693283	693606	.	-	.	ID=Os09t0107400-00;Name=Os09t0107400-00;Locus_id=Os09g0107400;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6YYU7 (UniProt);TENOR=Os09t0107400-00;KEGG=Os09t0107400-00
Chr09	irgsp1_rep	CDS	693283	693606	.	-	0	Parent=Os09t0107400-00
Chr09	irgsp1_rep	mRNA	732677	733008	.	-	.	ID=Os09t0107600-00;Name=Os09t0107600-00;Locus_id=Os09g0107600;Note=Similar to START domain-containing protein.;Transcript_evidence=BT085107 (DDBJ);ORF_evidence=Q5K2N0 (UniProt);InterPro=Domain of unknown function DUF1336 (IPR009769);TENOR=Os09t0107600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	732947	733008	.	-	.	Parent=Os09t0107600-00
Chr09	irgsp1_rep	CDS	732677	732946	.	-	0	Parent=Os09t0107600-00
Chr09	irgsp1_rep	mRNA	751720	755193	.	+	.	ID=Os09t0107900-01;Name=Os09t0107900-01;Locus_id=Os09g0107900;Note=Hypothetical conserved gene.;Transcript_evidence=AK066577 (DDBJ%2C Best hit);ORF_evidence=B9G236 (UniProt);NIAS_FLcDNA=J013069I21;Expression=AK066577;TENOR=Os09t0107900-01;KEGG=Os09t0107900-01
Chr09	irgsp1_rep	five_prime_UTR	751720	752182	.	+	.	Parent=Os09t0107900-01
Chr09	irgsp1_rep	five_prime_UTR	752783	752973	.	+	.	Parent=Os09t0107900-01
Chr09	irgsp1_rep	five_prime_UTR	753318	753400	.	+	.	Parent=Os09t0107900-01
Chr09	irgsp1_rep	five_prime_UTR	753504	753887	.	+	.	Parent=Os09t0107900-01
Chr09	irgsp1_rep	five_prime_UTR	754350	754504	.	+	.	Parent=Os09t0107900-01
Chr09	irgsp1_rep	CDS	754505	754611	.	+	0	Parent=Os09t0107900-01
Chr09	irgsp1_rep	CDS	754884	754956	.	+	1	Parent=Os09t0107900-01
Chr09	irgsp1_rep	three_prime_UTR	754957	755193	.	+	.	Parent=Os09t0107900-01
Chr09	irgsp1_rep	mRNA	799469	801926	.	+	.	ID=Os09t0108400-01;Name=Os09t0108400-01;Locus_id=Os09g0108400;Note=Similar to predicted protein.;Transcript_evidence=AK106506 (DDBJ%2C Best hit);ORF_evidence=B9G237 (UniProt);NIAS_FLcDNA=002-105-G01;Expression=AK106506;TENOR=Os09t0108400-01;KEGG=Os09t0108400-01
Chr09	irgsp1_rep	five_prime_UTR	799469	799549	.	+	.	Parent=Os09t0108400-01
Chr09	irgsp1_rep	five_prime_UTR	799631	799682	.	+	.	Parent=Os09t0108400-01
Chr09	irgsp1_rep	CDS	799683	800021	.	+	0	Parent=Os09t0108400-01
Chr09	irgsp1_rep	three_prime_UTR	800022	801926	.	+	.	Parent=Os09t0108400-01
Chr09	irgsp1_rep	mRNA	799487	806530	.	+	.	ID=Os09t0108400-02;Name=Os09t0108400-02;Locus_id=Os09g0108400;Note=Conserved hypothetical protein.;Transcript_evidence=AK071505 (DDBJ%2C Best hit);ORF_evidence=B9G237 (UniProt);NIAS_FLcDNA=J023089O08;Expression=AK071505;TENOR=Os09t0108400-02;KEGG=Os09t0108400-02
Chr09	irgsp1_rep	five_prime_UTR	799487	799549	.	+	.	Parent=Os09t0108400-02
Chr09	irgsp1_rep	five_prime_UTR	799631	799682	.	+	.	Parent=Os09t0108400-02
Chr09	irgsp1_rep	CDS	799683	799979	.	+	0	Parent=Os09t0108400-02
Chr09	irgsp1_rep	CDS	803797	803919	.	+	0	Parent=Os09t0108400-02
Chr09	irgsp1_rep	CDS	804745	804924	.	+	0	Parent=Os09t0108400-02
Chr09	irgsp1_rep	CDS	804997	805078	.	+	0	Parent=Os09t0108400-02
Chr09	irgsp1_rep	CDS	805908	805972	.	+	2	Parent=Os09t0108400-02
Chr09	irgsp1_rep	CDS	806060	806350	.	+	0	Parent=Os09t0108400-02
Chr09	irgsp1_rep	three_prime_UTR	806351	806530	.	+	.	Parent=Os09t0108400-02
Chr09	irgsp1_rep	mRNA	800934	804351	.	-	.	ID=Os09t0108450-01;Name=Os09t0108450-01;Locus_id=Os09g0108450;Note=Hypothetical gene.;Transcript_evidence=AK288314 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090021E01;TENOR=Os09t0108450-01;KEGG=Os09t0108450-01
Chr09	irgsp1_rep	five_prime_UTR	802204	804351	.	-	.	Parent=Os09t0108450-01
Chr09	irgsp1_rep	CDS	801856	802203	.	-	0	Parent=Os09t0108450-01
Chr09	irgsp1_rep	three_prime_UTR	800934	801855	.	-	.	Parent=Os09t0108450-01
Chr09	irgsp1_rep	mRNA	817568	822769	.	+	.	ID=Os09t0108600-01;Name=Os09t0108600-01;Locus_id=Os09g0108600;Note=Similar to Aldose 1-epimerase-like protein.;Transcript_evidence=AK063547 (DDBJ%2C Best hit);ORF_evidence=B3TLS6 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: isomerase activity (GO:0016853),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Aldose 1-epimerase (IPR008183),Glycoside hydrolase-type carbohydrate-binding (IPR011013),Glycoside hydrolase-type carbohydrate-binding%2C subgroup (IPR014718);NIAS_FLcDNA=001-117-D04;TENOR=Os09t0108600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	817568	817636	.	+	.	Parent=Os09t0108600-01
Chr09	irgsp1_rep	CDS	817637	818051	.	+	0	Parent=Os09t0108600-01
Chr09	irgsp1_rep	CDS	818141	818190	.	+	2	Parent=Os09t0108600-01
Chr09	irgsp1_rep	CDS	818384	818460	.	+	0	Parent=Os09t0108600-01
Chr09	irgsp1_rep	CDS	820769	820844	.	+	1	Parent=Os09t0108600-01
Chr09	irgsp1_rep	three_prime_UTR	820845	820895	.	+	.	Parent=Os09t0108600-01
Chr09	irgsp1_rep	three_prime_UTR	821953	822057	.	+	.	Parent=Os09t0108600-01
Chr09	irgsp1_rep	three_prime_UTR	822130	822769	.	+	.	Parent=Os09t0108600-01
Chr09	irgsp1_rep	mRNA	830650	831792	.	-	.	ID=Os09t0109150-00;Name=Os09t0109150-00;Locus_id=Os09g0109150;Note=Hypothetical conserved gene.;Transcript_evidence=AK241042 (DDBJ%2C Secondary hit);ORF_evidence=Q6YWB1 (UniProt);TENOR=Os09t0109150-00;KEGG=Os09t0109150-00
Chr09	irgsp1_rep	five_prime_UTR	831634	831792	.	-	.	Parent=Os09t0109150-00
Chr09	irgsp1_rep	CDS	831068	831633	.	-	0	Parent=Os09t0109150-00
Chr09	irgsp1_rep	CDS	830988	831041	.	-	1	Parent=Os09t0109150-00
Chr09	irgsp1_rep	CDS	830744	830926	.	-	1	Parent=Os09t0109150-00
Chr09	irgsp1_rep	CDS	830714	830735	.	-	1	Parent=Os09t0109150-00
Chr09	irgsp1_rep	three_prime_UTR	830650	830713	.	-	.	Parent=Os09t0109150-00
Chr09	irgsp1_rep	mRNA	854841	860480	.	-	.	ID=Os09t0109500-01;Name=Os09t0109500-01;Locus_id=Os09g0109500;Note=UNC-50 family protein.;Transcript_evidence=AK067482 (DDBJ%2C Best hit);ORF_evidence=NP_565370.1 (RefSeq);InterPro=UNC-50 (IPR007881);NIAS_FLcDNA=J013107E18;Expression=AK067482;TENOR=Os09t0109500-01;KEGG=Os09t0109500-01
Chr09	irgsp1_rep	five_prime_UTR	860416	860480	.	-	.	Parent=Os09t0109500-01
Chr09	irgsp1_rep	CDS	860329	860415	.	-	0	Parent=Os09t0109500-01
Chr09	irgsp1_rep	CDS	859311	859378	.	-	0	Parent=Os09t0109500-01
Chr09	irgsp1_rep	CDS	858524	858549	.	-	1	Parent=Os09t0109500-01
Chr09	irgsp1_rep	CDS	857761	857851	.	-	2	Parent=Os09t0109500-01
Chr09	irgsp1_rep	CDS	857419	857514	.	-	1	Parent=Os09t0109500-01
Chr09	irgsp1_rep	CDS	856017	856082	.	-	1	Parent=Os09t0109500-01
Chr09	irgsp1_rep	CDS	855677	855735	.	-	1	Parent=Os09t0109500-01
Chr09	irgsp1_rep	CDS	855479	855601	.	-	2	Parent=Os09t0109500-01
Chr09	irgsp1_rep	CDS	855323	855394	.	-	2	Parent=Os09t0109500-01
Chr09	irgsp1_rep	CDS	855191	855246	.	-	2	Parent=Os09t0109500-01
Chr09	irgsp1_rep	three_prime_UTR	854841	855190	.	-	.	Parent=Os09t0109500-01
Chr09	irgsp1_rep	mRNA	862654	863340	.	+	.	ID=Os09t0109600-01;Name=Os09t0109600-01;Locus_id=Os09g0109600;RAP-DB Gene Symbol Synonym(s)=OsDSSR1;RAP-DB Gene Name Synonym(s)=O. sativa drought and salt stress response-1;CGSNL Gene Symbol=DSSR1;CGSNL Gene Name=DROUGHT AND SALT STRESS RESPONSE 1;Oryzabase Gene Symbol Synonym(s)=OsDSSR1;Oryzabase Gene Name Synonym(s)=drought and salt stress response-1;Note=Small peptide%2C Drought tolerance;Transcript_evidence=AK063582;ORF_evidence=Q6YWA6;NIAS_FLcDNA=001-117-H11;Manual Curation=March 28%2C 2018;Literature_PMID=29576089;Oryzabase=22593;Expression=AK063582;TENOR=Os09t0109600-01;KEGG=Os09t0109600-01;Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737)
Chr09	irgsp1_rep	five_prime_UTR	862654	862777	.	+	.	Parent=Os09t0109600-01
Chr09	irgsp1_rep	CDS	862778	862822	.	+	0	Parent=Os09t0109600-01
Chr09	irgsp1_rep	CDS	862906	863088	.	+	0	Parent=Os09t0109600-01
Chr09	irgsp1_rep	three_prime_UTR	863089	863340	.	+	.	Parent=Os09t0109600-01
Chr09	irgsp1_rep	mRNA	878145	889542	.	+	.	ID=Os09t0109800-01;Name=Os09t0109800-01;Locus_id=Os09g0109800;RAP-DB Gene Symbol Synonym(s)=OsNHAD;CGSNL Gene Symbol=NHAD;Oryzabase Gene Symbol Synonym(s)=OsNHAD;Note=Putative Na<sup>+</sup> / H<sup>+</sup> antiporter%2C Resistance to salt stress%2C Na<sup>+</sup> homeostasis in rice chloroplasts;Transcript_evidence=AK059327 (truncated),AK058682 (truncated),Inferred from literature;ORF_evidence=A0A0P0XJN2;GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral component of membrane (GO:0016021);InterPro=Citrate transporter-like domain (IPR004680);NIAS_FLcDNA=001-026-A03 (truncated),001-019-A05 (truncated);Manual Curation=January 15%2C 2020;Literature_PMID=31928685;Oryzabase=23462;Expression=AK059327,AK058682;TENOR=Os09t0109800-01;KEGG=Os09t0109800-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=chloroplast envelope (GO:0009941)
Chr09	irgsp1_rep	five_prime_UTR	878145	878214	.	+	.	Parent=Os09t0109800-01
Chr09	irgsp1_rep	CDS	878215	878436	.	+	0	Parent=Os09t0109800-01
Chr09	irgsp1_rep	CDS	881495	881668	.	+	0	Parent=Os09t0109800-01
Chr09	irgsp1_rep	CDS	881817	881945	.	+	0	Parent=Os09t0109800-01
Chr09	irgsp1_rep	CDS	882800	882976	.	+	0	Parent=Os09t0109800-01
Chr09	irgsp1_rep	CDS	883925	884031	.	+	0	Parent=Os09t0109800-01
Chr09	irgsp1_rep	CDS	885461	885581	.	+	1	Parent=Os09t0109800-01
Chr09	irgsp1_rep	CDS	886958	887019	.	+	0	Parent=Os09t0109800-01
Chr09	irgsp1_rep	CDS	887108	887410	.	+	1	Parent=Os09t0109800-01
Chr09	irgsp1_rep	CDS	888106	888400	.	+	1	Parent=Os09t0109800-01
Chr09	irgsp1_rep	CDS	889063	889182	.	+	0	Parent=Os09t0109800-01
Chr09	irgsp1_rep	three_prime_UTR	889183	889542	.	+	.	Parent=Os09t0109800-01
Chr09	irgsp1_rep	mRNA	878147	889552	.	+	.	ID=Os09t0109800-02;Name=Os09t0109800-02;Locus_id=Os09g0109800;CGSNL Gene Symbol=NHAD;Oryzabase Gene Symbol Synonym(s)=OsNHAD;Note=Similar to Na+/H+ antiporter%2C probable CP0838.;Transcript_evidence=AK073983 (DDBJ%2C Best hit);ORF_evidence=XP_002885310.1 (RefSeq);GO=Biological Process: citrate transport (GO:0015746),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: citrate transmembrane transporter activity (GO:0015137);InterPro=Divalent ion symporter (IPR004680),Na+/H+ antiporter (IPR018390);NIAS_FLcDNA=J033075C14;Oryzabase=23462;Expression=AK073983;TENOR=Os09t0109800-02;KEGG=Os09t0109800-02
Chr09	irgsp1_rep	five_prime_UTR	878147	878214	.	+	.	Parent=Os09t0109800-02
Chr09	irgsp1_rep	CDS	878215	878436	.	+	0	Parent=Os09t0109800-02
Chr09	irgsp1_rep	CDS	881495	881668	.	+	0	Parent=Os09t0109800-02
Chr09	irgsp1_rep	CDS	881817	881945	.	+	0	Parent=Os09t0109800-02
Chr09	irgsp1_rep	CDS	882800	882976	.	+	0	Parent=Os09t0109800-02
Chr09	irgsp1_rep	CDS	883925	884031	.	+	0	Parent=Os09t0109800-02
Chr09	irgsp1_rep	CDS	885461	885581	.	+	1	Parent=Os09t0109800-02
Chr09	irgsp1_rep	CDS	886958	887019	.	+	0	Parent=Os09t0109800-02
Chr09	irgsp1_rep	CDS	887108	887410	.	+	1	Parent=Os09t0109800-02
Chr09	irgsp1_rep	CDS	888106	888409	.	+	1	Parent=Os09t0109800-02
Chr09	irgsp1_rep	three_prime_UTR	888410	889552	.	+	.	Parent=Os09t0109800-02
Chr09	irgsp1_rep	mRNA	878157	890186	.	+	.	ID=Os09t0109800-03;Name=Os09t0109800-03;Locus_id=Os09g0109800;CGSNL Gene Symbol=NHAD;Oryzabase Gene Symbol Synonym(s)=OsNHAD;Note=Divalent ion symporter domain containing protein.;Transcript_evidence=AK065455 (DDBJ%2C Best hit);ORF_evidence=XP_002885310.1 (RefSeq);GO=Biological Process: citrate transport (GO:0015746),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: citrate transmembrane transporter activity (GO:0015137);InterPro=Divalent ion symporter (IPR004680),Na+/H+ antiporter (IPR018390);NIAS_FLcDNA=J013023H14;Oryzabase=23462;Expression=AK065455;TENOR=Os09t0109800-03;KEGG=Os09t0109800-03
Chr09	irgsp1_rep	five_prime_UTR	878157	878214	.	+	.	Parent=Os09t0109800-03
Chr09	irgsp1_rep	CDS	878215	878436	.	+	0	Parent=Os09t0109800-03
Chr09	irgsp1_rep	CDS	881495	881668	.	+	0	Parent=Os09t0109800-03
Chr09	irgsp1_rep	CDS	881817	881945	.	+	0	Parent=Os09t0109800-03
Chr09	irgsp1_rep	CDS	882800	882976	.	+	0	Parent=Os09t0109800-03
Chr09	irgsp1_rep	CDS	883925	884031	.	+	0	Parent=Os09t0109800-03
Chr09	irgsp1_rep	CDS	885461	885581	.	+	1	Parent=Os09t0109800-03
Chr09	irgsp1_rep	CDS	886958	887019	.	+	0	Parent=Os09t0109800-03
Chr09	irgsp1_rep	CDS	887108	887410	.	+	1	Parent=Os09t0109800-03
Chr09	irgsp1_rep	CDS	888106	888246	.	+	1	Parent=Os09t0109800-03
Chr09	irgsp1_rep	CDS	888348	888501	.	+	1	Parent=Os09t0109800-03
Chr09	irgsp1_rep	three_prime_UTR	888502	890186	.	+	.	Parent=Os09t0109800-03
Chr09	irgsp1_rep	mRNA	906903	909618	.	+	.	ID=Os09t0110100-01;Name=Os09t0110100-01;Locus_id=Os09g0110100;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK106346 (DDBJ%2C Best hit);ORF_evidence=A3BW03 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-101-H04;Expression=AK106346;TENOR=Os09t0110100-01;KEGG=Os09t0110100-01
Chr09	irgsp1_rep	five_prime_UTR	906903	906945	.	+	.	Parent=Os09t0110100-01
Chr09	irgsp1_rep	CDS	906946	908656	.	+	0	Parent=Os09t0110100-01
Chr09	irgsp1_rep	CDS	908728	909401	.	+	2	Parent=Os09t0110100-01
Chr09	irgsp1_rep	three_prime_UTR	909402	909618	.	+	.	Parent=Os09t0110100-01
Chr09	irgsp1_rep	mRNA	907007	908637	.	-	.	ID=Os09t0110151-00;Name=Os09t0110151-00;Locus_id=Os09g0110151;Note=Hypothetical protein.;Transcript_evidence=tplb0023b14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0110151-00
Chr09	irgsp1_rep	five_prime_UTR	908562	908637	.	-	.	Parent=Os09t0110151-00
Chr09	irgsp1_rep	CDS	908086	908561	.	-	0	Parent=Os09t0110151-00
Chr09	irgsp1_rep	CDS	907886	907901	.	-	1	Parent=Os09t0110151-00
Chr09	irgsp1_rep	three_prime_UTR	907007	907885	.	-	.	Parent=Os09t0110151-00
Chr09	irgsp1_rep	mRNA	915379	918051	.	-	.	ID=Os09t0110200-01;Name=Os09t0110200-01;Locus_id=Os09g0110200;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK288338 (DDBJ%2C Best hit);ORF_evidence=NP_001062570.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J090023E14;TENOR=Os09t0110200-01;KEGG=Os09t0110200-01
Chr09	irgsp1_rep	five_prime_UTR	917959	918051	.	-	.	Parent=Os09t0110200-01
Chr09	irgsp1_rep	CDS	915574	917958	.	-	0	Parent=Os09t0110200-01
Chr09	irgsp1_rep	three_prime_UTR	915379	915573	.	-	.	Parent=Os09t0110200-01
Chr09	irgsp1_rep	mRNA	920635	926008	.	-	.	ID=Os09t0110300-01;Name=Os09t0110300-01;Locus_id=Os09g0110300;Oryzabase Gene Symbol Synonym(s)=OsCYL4%2C CYL4%2C OsCYL4a%2C OsCYL4b;Oryzabase Gene Name Synonym(s)=cyclase-like 4;Note=Putative cyclase family protein.;Transcript_evidence=AK061798 (DDBJ%2C Best hit);ORF_evidence=C8TFG5 (UniProt);InterPro=Putative cyclase (IPR007325);NIAS_FLcDNA=001-039-G11;Oryzabase=19888;Expression=AK061798;TENOR=Os09t0110300-01;KEGG=Os09t0110300-01
Chr09	irgsp1_rep	five_prime_UTR	925959	926008	.	-	.	Parent=Os09t0110300-01
Chr09	irgsp1_rep	CDS	925568	925958	.	-	0	Parent=Os09t0110300-01
Chr09	irgsp1_rep	CDS	925402	925446	.	-	2	Parent=Os09t0110300-01
Chr09	irgsp1_rep	CDS	923276	923348	.	-	2	Parent=Os09t0110300-01
Chr09	irgsp1_rep	CDS	922814	922911	.	-	1	Parent=Os09t0110300-01
Chr09	irgsp1_rep	CDS	922284	922354	.	-	2	Parent=Os09t0110300-01
Chr09	irgsp1_rep	CDS	920892	921017	.	-	0	Parent=Os09t0110300-01
Chr09	irgsp1_rep	three_prime_UTR	920635	920891	.	-	.	Parent=Os09t0110300-01
Chr09	irgsp1_rep	mRNA	920667	925984	.	-	.	ID=Os09t0110300-02;Name=Os09t0110300-02;Locus_id=Os09g0110300;Oryzabase Gene Symbol Synonym(s)=OsCYL4%2C CYL4%2C OsCYL4a%2C OsCYL4b;Oryzabase Gene Name Synonym(s)=cyclase-like 4;Note=Putative cyclase family protein.;Transcript_evidence=AK098934 (DDBJ%2C Best hit);ORF_evidence=C8TFG5 (UniProt);InterPro=Putative cyclase (IPR007325);NIAS_FLcDNA=J013038J19;Oryzabase=19888;Expression=AK098934;TENOR=Os09t0110300-02;KEGG=Os09t0110300-02
Chr09	irgsp1_rep	five_prime_UTR	925959	925984	.	-	.	Parent=Os09t0110300-02
Chr09	irgsp1_rep	CDS	925568	925958	.	-	0	Parent=Os09t0110300-02
Chr09	irgsp1_rep	CDS	925402	925446	.	-	2	Parent=Os09t0110300-02
Chr09	irgsp1_rep	CDS	923276	923348	.	-	2	Parent=Os09t0110300-02
Chr09	irgsp1_rep	CDS	922814	922911	.	-	1	Parent=Os09t0110300-02
Chr09	irgsp1_rep	CDS	922284	922354	.	-	2	Parent=Os09t0110300-02
Chr09	irgsp1_rep	CDS	920892	921017	.	-	0	Parent=Os09t0110300-02
Chr09	irgsp1_rep	three_prime_UTR	920667	920891	.	-	.	Parent=Os09t0110300-02
Chr09	irgsp1_rep	mRNA	927068	933686	.	+	.	ID=Os09t0110400-01;Name=Os09t0110400-01;Locus_id=Os09g0110400;Note=Similar to DNA-directed RNA polymerase II 36 kDa polypeptide A (EC 2.7.7.6) (RNA polymerase II subunit 3).;Transcript_evidence=AK121793 (DDBJ%2C Best hit);ORF_evidence=B6TCC3 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899),Molecular Function: protein dimerization activity (GO:0046983);InterPro=DNA-directed RNA polymerase%2C 30-40kDa subunit%2C conserved site (IPR001514),DNA-directed RNA polymerase%2C RBP11-like (IPR009025),DNA-directed RNA polymerase%2C dimerisation (IPR011261),DNA-directed RNA polymerase%2C insert domain (IPR011262),DNA-directed RNA polymerase%2C RpoA/D/Rpb3-type (IPR011263);NIAS_FLcDNA=J033095G14;Expression=AK121793;TENOR=Os09t0110400-01;KEGG=Os09t0110400-01 (EC:2.7.7.6)
Chr09	irgsp1_rep	five_prime_UTR	927068	927205	.	+	.	Parent=Os09t0110400-01
Chr09	irgsp1_rep	CDS	927206	927699	.	+	0	Parent=Os09t0110400-01
Chr09	irgsp1_rep	CDS	928543	928780	.	+	1	Parent=Os09t0110400-01
Chr09	irgsp1_rep	CDS	933213	933473	.	+	0	Parent=Os09t0110400-01
Chr09	irgsp1_rep	three_prime_UTR	933474	933686	.	+	.	Parent=Os09t0110400-01
Chr09	irgsp1_rep	mRNA	927110	934049	.	+	.	ID=Os09t0110400-02;Name=Os09t0110400-02;Locus_id=Os09g0110400;Note=Similar to DNA-directed RNA polymerase II 36 kDa polypeptide A (EC 2.7.7.6) (RNA polymerase II subunit 3).;Transcript_evidence=AK068844 (DDBJ%2C Best hit),AK061402 (DDBJ%2C Best hit),AK120034 (DDBJ%2C Best hit);ORF_evidence=B6TCC3 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899),Molecular Function: protein dimerization activity (GO:0046983);InterPro=DNA-directed RNA polymerase%2C 30-40kDa subunit%2C conserved site (IPR001514),DNA-directed RNA polymerase%2C RBP11-like (IPR009025),DNA-directed RNA polymerase%2C dimerisation (IPR011261),DNA-directed RNA polymerase%2C insert domain (IPR011262),DNA-directed RNA polymerase%2C RpoA/D/Rpb3-type (IPR011263);NIAS_FLcDNA=J013163O03,006-305-H09,002-188-B04;TENOR=Os09t0110400-02
Chr09	irgsp1_rep	five_prime_UTR	927110	927205	.	+	.	Parent=Os09t0110400-02
Chr09	irgsp1_rep	CDS	927206	927699	.	+	0	Parent=Os09t0110400-02
Chr09	irgsp1_rep	CDS	928543	928780	.	+	1	Parent=Os09t0110400-02
Chr09	irgsp1_rep	CDS	933213	933473	.	+	0	Parent=Os09t0110400-02
Chr09	irgsp1_rep	three_prime_UTR	933474	934049	.	+	.	Parent=Os09t0110400-02
Chr09	irgsp1_rep	mRNA	927143	933723	.	+	.	ID=Os09t0110400-03;Name=Os09t0110400-03;Locus_id=Os09g0110400;Note=Similar to DNA-directed RNA polymerase II 36 kDa polypeptide A (EC 2.7.7.6) (RNA polymerase II subunit 3).;Transcript_evidence=AK103978 (DDBJ%2C Best hit);ORF_evidence=B6TCC3 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899),Molecular Function: protein dimerization activity (GO:0046983);InterPro=DNA-directed RNA polymerase%2C 30-40kDa subunit%2C conserved site (IPR001514),DNA-directed RNA polymerase%2C RBP11-like (IPR009025),DNA-directed RNA polymerase%2C dimerisation (IPR011261),DNA-directed RNA polymerase%2C insert domain (IPR011262),DNA-directed RNA polymerase%2C RpoA/D/Rpb3-type (IPR011263);NIAS_FLcDNA=001-016-H08;Expression=AK103978;TENOR=Os09t0110400-03;KEGG=Os09t0110400-03 (EC:2.7.7.6)
Chr09	irgsp1_rep	five_prime_UTR	927143	927205	.	+	.	Parent=Os09t0110400-03
Chr09	irgsp1_rep	CDS	927206	927699	.	+	0	Parent=Os09t0110400-03
Chr09	irgsp1_rep	CDS	928543	928780	.	+	1	Parent=Os09t0110400-03
Chr09	irgsp1_rep	CDS	933213	933473	.	+	0	Parent=Os09t0110400-03
Chr09	irgsp1_rep	three_prime_UTR	933474	933723	.	+	.	Parent=Os09t0110400-03
Chr09	irgsp1_rep	mRNA	937082	938258	.	-	.	ID=Os09t0110500-01;Name=Os09t0110500-01;Locus_id=Os09g0110500;Note=Hypothetical protein.;Transcript_evidence=AK069507 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023019M23;TENOR=Os09t0110500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	937581	938258	.	-	0	Parent=Os09t0110500-01
Chr09	irgsp1_rep	three_prime_UTR	937082	937580	.	-	.	Parent=Os09t0110500-01
Chr09	irgsp1_rep	mRNA	966611	966907	.	+	.	ID=Os09t0110750-00;Name=Os09t0110750-00;Locus_id=Os09g0110750;Note=Similar to 30S ribosomal protein S7.;Transcript_evidence=EU957350 (DDBJ);ORF_evidence=B3SH05 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: small ribosomal subunit (GO:0015935),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S7 (IPR000235),Ribosomal protein S7%2C bacterial-type (IPR005717),Ribosomal protein S7 domain (IPR023798);TENOR=Os09t0110750-00;KEGG=Os09t0110750-00
Chr09	irgsp1_rep	five_prime_UTR	966611	966701	.	+	.	Parent=Os09t0110750-00
Chr09	irgsp1_rep	CDS	966702	966836	.	+	0	Parent=Os09t0110750-00
Chr09	irgsp1_rep	three_prime_UTR	966837	966907	.	+	.	Parent=Os09t0110750-00
Chr09	irgsp1_rep	mRNA	969784	971670	.	-	.	ID=Os09t0111100-01;Name=Os09t0111100-01;Locus_id=Os09g0111100;CGSNL Gene Symbol=CYCD3%3B1;CGSNL Gene Name=CYCLIN-D3-1;Oryzabase Gene Symbol Synonym(s)=CycD3%3B1%2C CycD3%3Bos%3B1%2C Orysa%3BCycD3%3B1%2C Orysa%3BCYCD3%3B1;Oryzabase Gene Name Synonym(s)=D-type cyclin 3%3B1;Note=Cyclin D domain containing protein.;Transcript_evidence=AK103499 (DDBJ%2C Best hit);ORF_evidence=Q0J3H7 (UniProt);InterPro=Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763);NIAS_FLcDNA=J033131B09;Oryzabase=13268;Expression=AK103499;TENOR=Os09t0111100-01;KEGG=Os09t0111100-01
Chr09	irgsp1_rep	five_prime_UTR	971530	971670	.	-	.	Parent=Os09t0111100-01
Chr09	irgsp1_rep	CDS	970875	971529	.	-	0	Parent=Os09t0111100-01
Chr09	irgsp1_rep	CDS	970659	970783	.	-	2	Parent=Os09t0111100-01
Chr09	irgsp1_rep	CDS	970261	970575	.	-	0	Parent=Os09t0111100-01
Chr09	irgsp1_rep	three_prime_UTR	969784	970260	.	-	.	Parent=Os09t0111100-01
Chr09	irgsp1_rep	mRNA	977382	978919	.	-	.	ID=Os09t0111300-01;Name=Os09t0111300-01;Locus_id=Os09g0111300;Note=Hypothetical gene.;Transcript_evidence=AK106600 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-112-B06;Expression=AK106600;TENOR=Os09t0111300-01;KEGG=Os09t0111300-01
Chr09	irgsp1_rep	five_prime_UTR	978625	978919	.	-	.	Parent=Os09t0111300-01
Chr09	irgsp1_rep	five_prime_UTR	978397	978527	.	-	.	Parent=Os09t0111300-01
Chr09	irgsp1_rep	CDS	978163	978396	.	-	0	Parent=Os09t0111300-01
Chr09	irgsp1_rep	three_prime_UTR	977382	978162	.	-	.	Parent=Os09t0111300-01
Chr09	irgsp1_rep	mRNA	987413	988198	.	+	.	ID=Os09t0111700-00;Name=Os09t0111700-00;Locus_id=Os09g0111700;Note=Hypothetical conserved gene.;Transcript_evidence=AK111357 (DDBJ%2C Secondary hit);ORF_evidence=Q6YXA4 (UniProt);Expression=AK111357;TENOR=Os09t0111700-00;KEGG=Os09t0111700-00
Chr09	irgsp1_rep	five_prime_UTR	987413	987624	.	+	.	Parent=Os09t0111700-00
Chr09	irgsp1_rep	five_prime_UTR	987727	987756	.	+	.	Parent=Os09t0111700-00
Chr09	irgsp1_rep	CDS	987757	987969	.	+	0	Parent=Os09t0111700-00
Chr09	irgsp1_rep	three_prime_UTR	987970	988198	.	+	.	Parent=Os09t0111700-00
Chr09	irgsp1_rep	mRNA	993697	995615	.	-	.	ID=Os09t0111800-01;Name=Os09t0111800-01;Locus_id=Os09g0111800;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK060898 (DDBJ%2C Best hit);ORF_evidence=Q9ST90 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-035-D03;Expression=AK060898;TENOR=Os09t0111800-01;KEGG=Os09t0111800-01
Chr09	irgsp1_rep	five_prime_UTR	995315	995615	.	-	.	Parent=Os09t0111800-01
Chr09	irgsp1_rep	five_prime_UTR	995129	995207	.	-	.	Parent=Os09t0111800-01
Chr09	irgsp1_rep	CDS	994640	995128	.	-	0	Parent=Os09t0111800-01
Chr09	irgsp1_rep	CDS	993969	994124	.	-	0	Parent=Os09t0111800-01
Chr09	irgsp1_rep	three_prime_UTR	993697	993968	.	-	.	Parent=Os09t0111800-01
Chr09	irgsp1_rep	mRNA	993321	995611	.	-	.	ID=Os09t0111800-02;Name=Os09t0111800-02;Locus_id=Os09g0111800;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK069338 (DDBJ%2C Best hit);ORF_evidence=Q9ST90 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023012N03;Expression=AK069338;TENOR=Os09t0111800-02;KEGG=Os09t0111800-02
Chr09	irgsp1_rep	five_prime_UTR	995129	995611	.	-	.	Parent=Os09t0111800-02
Chr09	irgsp1_rep	CDS	994640	995128	.	-	0	Parent=Os09t0111800-02
Chr09	irgsp1_rep	CDS	993969	994124	.	-	0	Parent=Os09t0111800-02
Chr09	irgsp1_rep	three_prime_UTR	993643	993968	.	-	.	Parent=Os09t0111800-02
Chr09	irgsp1_rep	three_prime_UTR	993321	993552	.	-	.	Parent=Os09t0111800-02
Chr09	irgsp1_rep	mRNA	1002408	1004030	.	-	.	ID=Os09t0112100-01;Name=Os09t0112100-01;Locus_id=Os09g0112100;Note=Hypothetical protein.;Transcript_evidence=AK120925 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023035P04;TENOR=Os09t0112100-01;KEGG=Os09t0112100-01
Chr09	irgsp1_rep	five_prime_UTR	1003622	1004030	.	-	.	Parent=Os09t0112100-01
Chr09	irgsp1_rep	CDS	1003286	1003621	.	-	0	Parent=Os09t0112100-01
Chr09	irgsp1_rep	three_prime_UTR	1002408	1003285	.	-	.	Parent=Os09t0112100-01
Chr09	irgsp1_rep	mRNA	998548	1003120	.	-	.	ID=Os09t0112100-02;Name=Os09t0112100-02;Locus_id=Os09g0112100;Note=Hypothetical gene.;Transcript_evidence=AK288269 (DDBJ%2C Best hit);ORF_evidence=NP_001175710.1 (RefSeq);NIAS_FLcDNA=J090016O06;TENOR=Os09t0112100-02;KEGG=Os09t0112100-02
Chr09	irgsp1_rep	five_prime_UTR	1001609	1003120	.	-	.	Parent=Os09t0112100-02
Chr09	irgsp1_rep	CDS	1001210	1001608	.	-	0	Parent=Os09t0112100-02
Chr09	irgsp1_rep	three_prime_UTR	998548	1001209	.	-	.	Parent=Os09t0112100-02
Chr09	irgsp1_rep	mRNA	997485	1000481	.	-	.	ID=Os09t0112100-03;Name=Os09t0112100-03;Locus_id=Os09g0112100;Note=Similar to Lipase family protein.;Transcript_evidence=AK065354 (DDBJ%2C Best hit);ORF_evidence=Q2R051 (UniProt);NIAS_FLcDNA=J013021B08;TENOR=Os09t0112100-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	997935	1000481	.	-	.	Parent=Os09t0112100-03
Chr09	irgsp1_rep	CDS	997879	997934	.	-	0	Parent=Os09t0112100-03
Chr09	irgsp1_rep	CDS	997704	997725	.	-	1	Parent=Os09t0112100-03
Chr09	irgsp1_rep	three_prime_UTR	997485	997703	.	-	.	Parent=Os09t0112100-03
Chr09	irgsp1_rep	mRNA	1005012	1005350	.	+	.	ID=Os09t0112300-00;Name=Os09t0112300-00;Locus_id=Os09g0112300;Note=Non-protein coding transcript.;Transcript_evidence=AF467731 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os09t0112300-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	exon	1005012	1005350	.	+	.	Parent=Os09t0112300-00
Chr09	irgsp1_rep	mRNA	1006810	1012534	.	-	.	ID=Os09t0112400-01;Name=Os09t0112400-01;Locus_id=Os09g0112400;Note=Similar to DCL protein%2C chloroplast precursor (Defective chloroplasts and leaves protein).;Transcript_evidence=AK109186 (DDBJ%2C Best hit);ORF_evidence=NP_001148429.1 (RefSeq);GO=Biological Process: amine metabolic process (GO:0009308),Molecular Function: copper ion binding (GO:0005507),Molecular Function: quinone binding (GO:0048038);InterPro=Copper amine oxidase%2C N2/N3-terminal (IPR015801),Protein of unknown function DUF3223 (IPR021602);NIAS_FLcDNA=002-156-A09;Expression=AK109186;TENOR=Os09t0112400-01;KEGG=Os09t0112400-01
Chr09	irgsp1_rep	five_prime_UTR	1012510	1012534	.	-	.	Parent=Os09t0112400-01
Chr09	irgsp1_rep	CDS	1012328	1012509	.	-	0	Parent=Os09t0112400-01
Chr09	irgsp1_rep	CDS	1010873	1010987	.	-	1	Parent=Os09t0112400-01
Chr09	irgsp1_rep	CDS	1007050	1007232	.	-	0	Parent=Os09t0112400-01
Chr09	irgsp1_rep	three_prime_UTR	1006810	1007049	.	-	.	Parent=Os09t0112400-01
Chr09	irgsp1_rep	mRNA	1055771	1056393	.	+	.	ID=Os09t0113000-01;Name=Os09t0113000-01;Locus_id=Os09g0113000;Note=Conserved hypothetical protein.;Transcript_evidence=AK062770 (DDBJ%2C Best hit);ORF_evidence=Q6YUN4 (UniProt);NIAS_FLcDNA=001-107-A02;Oryzabase=17600;Expression=AK062770;TENOR=Os09t0113000-01;KEGG=Os09t0113000-01
Chr09	irgsp1_rep	five_prime_UTR	1055771	1055771	.	+	.	Parent=Os09t0113000-01
Chr09	irgsp1_rep	CDS	1055772	1056017	.	+	0	Parent=Os09t0113000-01
Chr09	irgsp1_rep	three_prime_UTR	1056018	1056393	.	+	.	Parent=Os09t0113000-01
Chr09	irgsp1_rep	mRNA	1111025	1111675	.	-	.	ID=Os09t0113500-00;Name=Os09t0113500-00;Locus_id=Os09g0113500;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);InterPro=Ribonuclease H1%2C N-terminal (IPR011320);TENOR=Os09t0113500-00
Chr09	irgsp1_rep	five_prime_UTR	1111672	1111675	.	-	.	Parent=Os09t0113500-00
Chr09	irgsp1_rep	CDS	1111312	1111671	.	-	0	Parent=Os09t0113500-00
Chr09	irgsp1_rep	three_prime_UTR	1111025	1111311	.	-	.	Parent=Os09t0113500-00
Chr09	irgsp1_rep	mRNA	1158082	1167612	.	+	.	ID=Os09t0114500-01;Name=Os09t0114500-01;Locus_id=Os09g0114500;RAP-DB Gene Symbol Synonym(s)=BC12%2C bc12%2C gdd%2C GDD1%2C BC12/GDD1;RAP-DB Gene Name Synonym(s)=BRITTLE CULM 12%2C Gibberellin-deficient dwarf 1%2C gibberellin-deficient dwarf1%2C kinesin-4 protein BRITTLE CULM12%2C kinesin-like protein BRITTLE CULM12%2C OsKinesin-4;CGSNL Gene Symbol=BC12;CGSNL Gene Name=BRITTLE CULM 12;Oryzabase Gene Symbol Synonym(s)=bc12%2C gdd%2C GDD1%2C BC12/GDD1%2C OsGDD1%2C OsBC12/GDD1%2C OsBC12;Oryzabase Gene Name Synonym(s)=Gibberellin-deficient dwarf 1%2C gibberellin-deficient dwarf1%2C kinesin-4 protein BRITTLE CULM12%2C kinesin-like protein BRITTLE CULM12%2C OsKinesin-4;Note=Kinesin-4 protein with transcription regulation activity%2C Cell cycle and wall modification%2C Cell elongation by regulating GA biosynthesis pathway;Transcript_evidence=AK100974 (Genbank);ORF_evidence=Q6YUL8 (UniProt);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752),Kinesin%2C motor region%2C conserved site (IPR019821);NIAS_FLcDNA=J023143D04;Manual Curation=July 23%2C 2010;Literature_PMID=20444225,21325138;Oryzabase=9051;TENOR=Os09t0114500-01;KEGG=Os09t0114500-01
Chr09	irgsp1_rep	five_prime_UTR	1158082	1158618	.	+	.	Parent=Os09t0114500-01
Chr09	irgsp1_rep	CDS	1158619	1158741	.	+	0	Parent=Os09t0114500-01
Chr09	irgsp1_rep	CDS	1159847	1159993	.	+	0	Parent=Os09t0114500-01
Chr09	irgsp1_rep	CDS	1160334	1160483	.	+	0	Parent=Os09t0114500-01
Chr09	irgsp1_rep	CDS	1160560	1160819	.	+	0	Parent=Os09t0114500-01
Chr09	irgsp1_rep	CDS	1161185	1161372	.	+	1	Parent=Os09t0114500-01
Chr09	irgsp1_rep	CDS	1161475	1161599	.	+	2	Parent=Os09t0114500-01
Chr09	irgsp1_rep	CDS	1161773	1161809	.	+	0	Parent=Os09t0114500-01
Chr09	irgsp1_rep	CDS	1162090	1162181	.	+	2	Parent=Os09t0114500-01
Chr09	irgsp1_rep	CDS	1162311	1162421	.	+	0	Parent=Os09t0114500-01
Chr09	irgsp1_rep	CDS	1162530	1162640	.	+	0	Parent=Os09t0114500-01
Chr09	irgsp1_rep	CDS	1162864	1162957	.	+	0	Parent=Os09t0114500-01
Chr09	irgsp1_rep	CDS	1163118	1163233	.	+	2	Parent=Os09t0114500-01
Chr09	irgsp1_rep	CDS	1163604	1163699	.	+	0	Parent=Os09t0114500-01
Chr09	irgsp1_rep	CDS	1163798	1163905	.	+	0	Parent=Os09t0114500-01
Chr09	irgsp1_rep	CDS	1163986	1164102	.	+	0	Parent=Os09t0114500-01
Chr09	irgsp1_rep	CDS	1164198	1164278	.	+	0	Parent=Os09t0114500-01
Chr09	irgsp1_rep	CDS	1164493	1164564	.	+	0	Parent=Os09t0114500-01
Chr09	irgsp1_rep	CDS	1164841	1164934	.	+	0	Parent=Os09t0114500-01
Chr09	irgsp1_rep	CDS	1165047	1165075	.	+	2	Parent=Os09t0114500-01
Chr09	irgsp1_rep	CDS	1165158	1165255	.	+	0	Parent=Os09t0114500-01
Chr09	irgsp1_rep	CDS	1165353	1165448	.	+	1	Parent=Os09t0114500-01
Chr09	irgsp1_rep	CDS	1165687	1165908	.	+	1	Parent=Os09t0114500-01
Chr09	irgsp1_rep	CDS	1166290	1166446	.	+	1	Parent=Os09t0114500-01
Chr09	irgsp1_rep	CDS	1166760	1166915	.	+	0	Parent=Os09t0114500-01
Chr09	irgsp1_rep	CDS	1166991	1167218	.	+	0	Parent=Os09t0114500-01
Chr09	irgsp1_rep	three_prime_UTR	1167219	1167612	.	+	.	Parent=Os09t0114500-01
Chr09	irgsp1_rep	mRNA	1159830	1167820	.	+	.	ID=Os09t0114500-02;Name=Os09t0114500-02;Locus_id=Os09g0114500;CGSNL Gene Symbol=BC12;CGSNL Gene Name=BRITTLE CULM 12;Oryzabase Gene Symbol Synonym(s)=bc12%2C gdd%2C GDD1%2C BC12/GDD1%2C OsGDD1%2C OsBC12/GDD1%2C OsBC12;Oryzabase Gene Name Synonym(s)=Gibberellin-deficient dwarf 1%2C gibberellin-deficient dwarf1%2C kinesin-4 protein BRITTLE CULM12%2C kinesin-like protein BRITTLE CULM12%2C OsKinesin-4;Note=Similar to Kinesin-like protein.;Transcript_evidence=AK067738 (DDBJ%2C Best hit);ORF_evidence=Q9FIJ9 (UniProt);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752),Kinesin%2C motor region%2C conserved site (IPR019821);NIAS_FLcDNA=J013119B11;Oryzabase=9051;TENOR=Os09t0114500-02;KEGG=Os09t0114500-02
Chr09	irgsp1_rep	five_prime_UTR	1159830	1159831	.	+	.	Parent=Os09t0114500-02
Chr09	irgsp1_rep	CDS	1159832	1159993	.	+	0	Parent=Os09t0114500-02
Chr09	irgsp1_rep	CDS	1160334	1160483	.	+	0	Parent=Os09t0114500-02
Chr09	irgsp1_rep	CDS	1160560	1160819	.	+	0	Parent=Os09t0114500-02
Chr09	irgsp1_rep	CDS	1161185	1161372	.	+	1	Parent=Os09t0114500-02
Chr09	irgsp1_rep	CDS	1161475	1161599	.	+	2	Parent=Os09t0114500-02
Chr09	irgsp1_rep	CDS	1161773	1161809	.	+	0	Parent=Os09t0114500-02
Chr09	irgsp1_rep	CDS	1162090	1162181	.	+	2	Parent=Os09t0114500-02
Chr09	irgsp1_rep	CDS	1162311	1162421	.	+	0	Parent=Os09t0114500-02
Chr09	irgsp1_rep	CDS	1162530	1162640	.	+	0	Parent=Os09t0114500-02
Chr09	irgsp1_rep	CDS	1162864	1162957	.	+	0	Parent=Os09t0114500-02
Chr09	irgsp1_rep	CDS	1163118	1163233	.	+	2	Parent=Os09t0114500-02
Chr09	irgsp1_rep	CDS	1163604	1163699	.	+	0	Parent=Os09t0114500-02
Chr09	irgsp1_rep	CDS	1163798	1163905	.	+	0	Parent=Os09t0114500-02
Chr09	irgsp1_rep	CDS	1163986	1164102	.	+	0	Parent=Os09t0114500-02
Chr09	irgsp1_rep	CDS	1164198	1164278	.	+	0	Parent=Os09t0114500-02
Chr09	irgsp1_rep	CDS	1164493	1164564	.	+	0	Parent=Os09t0114500-02
Chr09	irgsp1_rep	CDS	1164841	1164934	.	+	0	Parent=Os09t0114500-02
Chr09	irgsp1_rep	CDS	1165047	1165075	.	+	2	Parent=Os09t0114500-02
Chr09	irgsp1_rep	CDS	1165158	1165255	.	+	0	Parent=Os09t0114500-02
Chr09	irgsp1_rep	CDS	1165353	1165448	.	+	1	Parent=Os09t0114500-02
Chr09	irgsp1_rep	CDS	1165687	1165908	.	+	1	Parent=Os09t0114500-02
Chr09	irgsp1_rep	CDS	1166290	1166446	.	+	1	Parent=Os09t0114500-02
Chr09	irgsp1_rep	CDS	1166760	1166915	.	+	0	Parent=Os09t0114500-02
Chr09	irgsp1_rep	CDS	1166991	1167218	.	+	0	Parent=Os09t0114500-02
Chr09	irgsp1_rep	three_prime_UTR	1167219	1167820	.	+	.	Parent=Os09t0114500-02
Chr09	irgsp1_rep	mRNA	1162886	1167363	.	+	.	ID=Os09t0114500-03;Name=Os09t0114500-03;Locus_id=Os09g0114500;CGSNL Gene Symbol=BC12;CGSNL Gene Name=BRITTLE CULM 12;Oryzabase Gene Symbol Synonym(s)=bc12%2C gdd%2C GDD1%2C BC12/GDD1%2C OsGDD1%2C OsBC12/GDD1%2C OsBC12;Oryzabase Gene Name Synonym(s)=Gibberellin-deficient dwarf 1%2C gibberellin-deficient dwarf1%2C kinesin-4 protein BRITTLE CULM12%2C kinesin-like protein BRITTLE CULM12%2C OsKinesin-4;Note=Similar to FRA1 (FRAGILE FIBER 1)%3B microtubule motor.;Transcript_evidence=AK058665 (DDBJ%2C Best hit);ORF_evidence=NP_851151.1 (RefSeq);NIAS_FLcDNA=001-018-G08;Oryzabase=9051;TENOR=Os09t0114500-03;KEGG=Os09t0114500-03
Chr09	irgsp1_rep	five_prime_UTR	1162886	1162887	.	+	.	Parent=Os09t0114500-03
Chr09	irgsp1_rep	CDS	1162888	1162957	.	+	0	Parent=Os09t0114500-03
Chr09	irgsp1_rep	CDS	1163121	1163233	.	+	2	Parent=Os09t0114500-03
Chr09	irgsp1_rep	CDS	1163604	1163699	.	+	0	Parent=Os09t0114500-03
Chr09	irgsp1_rep	CDS	1163798	1163905	.	+	0	Parent=Os09t0114500-03
Chr09	irgsp1_rep	CDS	1163986	1164102	.	+	0	Parent=Os09t0114500-03
Chr09	irgsp1_rep	CDS	1164198	1164278	.	+	0	Parent=Os09t0114500-03
Chr09	irgsp1_rep	CDS	1164493	1164564	.	+	0	Parent=Os09t0114500-03
Chr09	irgsp1_rep	CDS	1164841	1164934	.	+	0	Parent=Os09t0114500-03
Chr09	irgsp1_rep	CDS	1165047	1165075	.	+	2	Parent=Os09t0114500-03
Chr09	irgsp1_rep	CDS	1165158	1165255	.	+	0	Parent=Os09t0114500-03
Chr09	irgsp1_rep	CDS	1165353	1165448	.	+	1	Parent=Os09t0114500-03
Chr09	irgsp1_rep	CDS	1165687	1165908	.	+	1	Parent=Os09t0114500-03
Chr09	irgsp1_rep	CDS	1166290	1166446	.	+	1	Parent=Os09t0114500-03
Chr09	irgsp1_rep	CDS	1166760	1166915	.	+	0	Parent=Os09t0114500-03
Chr09	irgsp1_rep	CDS	1166991	1167218	.	+	0	Parent=Os09t0114500-03
Chr09	irgsp1_rep	three_prime_UTR	1167219	1167363	.	+	.	Parent=Os09t0114500-03
Chr09	irgsp1_rep	mRNA	1167436	1167873	.	+	.	ID=Os09t0114500-04;Name=Os09t0114500-04;Locus_id=Os09g0114500;CGSNL Gene Symbol=BC12;CGSNL Gene Name=BRITTLE CULM 12;Oryzabase Gene Symbol Synonym(s)=bc12%2C gdd%2C GDD1%2C BC12/GDD1%2C OsGDD1%2C OsBC12/GDD1%2C OsBC12;Oryzabase Gene Name Synonym(s)=Gibberellin-deficient dwarf 1%2C gibberellin-deficient dwarf1%2C kinesin-4 protein BRITTLE CULM12%2C kinesin-like protein BRITTLE CULM12%2C OsKinesin-4;Note=Hypothetical protein.;Transcript_evidence=AK059015 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-021-A09;Oryzabase=9051;TENOR=Os09t0114500-04;KEGG=Os09t0114500-04
Chr09	irgsp1_rep	five_prime_UTR	1167436	1167436	.	+	.	Parent=Os09t0114500-04
Chr09	irgsp1_rep	CDS	1167437	1167649	.	+	0	Parent=Os09t0114500-04
Chr09	irgsp1_rep	three_prime_UTR	1167650	1167873	.	+	.	Parent=Os09t0114500-04
Chr09	irgsp1_rep	mRNA	1168276	1168348	.	+	.	ID=Os09t0114566-00;Name=Os09t0114566-00;Locus_id=Os09g0114566;Note=Non-protein coding transcript.;Transcript_evidence=X06284 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0114566-00
Chr09	irgsp1_rep	exon	1168276	1168348	.	+	.	Parent=Os09t0114566-00
Chr09	irgsp1_rep	mRNA	1170025	1173039	.	-	.	ID=Os09t0114700-00;Name=Os09t0114700-00;Locus_id=Os09g0114700;Note=WIYLD domain domain containing protein.;Transcript_evidence=AK332786 (DDBJ);ORF_evidence=B9G251 (UniProt);GO=Molecular Function: histone-lysine N-methyltransferase activity (GO:0018024);InterPro=WIYLD domain (IPR018848);TENOR=Os09t0114700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	1172800	1173039	.	-	0	Parent=Os09t0114700-00
Chr09	irgsp1_rep	CDS	1172412	1172534	.	-	0	Parent=Os09t0114700-00
Chr09	irgsp1_rep	CDS	1171458	1171504	.	-	0	Parent=Os09t0114700-00
Chr09	irgsp1_rep	CDS	1170266	1170296	.	-	1	Parent=Os09t0114700-00
Chr09	irgsp1_rep	three_prime_UTR	1170025	1170265	.	-	.	Parent=Os09t0114700-00
Chr09	irgsp1_rep	mRNA	1180632	1180703	.	+	.	ID=Os09t0114933-00;Name=Os09t0114933-00;Locus_id=Os09g0114933;Note=Non-protein coding transcript.;Transcript_evidence=X06284 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0114933-00
Chr09	irgsp1_rep	exon	1180632	1180703	.	+	.	Parent=Os09t0114933-00
Chr09	irgsp1_rep	mRNA	1205307	1205930	.	+	.	ID=Os09t0115166-01;Name=Os09t0115166-01;Locus_id=Os09g0115166;Note=Non-protein coding transcript.;Transcript_evidence=AK288627 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090054N12;TENOR=Os09t0115166-01
Chr09	irgsp1_rep	exon	1205307	1205930	.	+	.	Parent=Os09t0115166-01
Chr09	irgsp1_rep	mRNA	1212964	1218005	.	-	.	ID=Os09t0115400-01;Name=Os09t0115400-01;Locus_id=Os09g0115400;Oryzabase Gene Symbol Synonym(s)=OsPABPC1%2C PABPC1;Oryzabase Gene Name Synonym(s)=Polyadenylate-binding protein;Note=Similar to Poly(A)-binding protein.;Transcript_evidence=AK101706 (DDBJ%2C Best hit),AK067816 (DDBJ%2C Best hit);ORF_evidence=A2YYH2 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723);InterPro=RNA recognition motif domain (IPR000504),Polyadenylate-binding protein/Hyperplastic disc protein (IPR002004),RNA recognition motif domain%2C eukaryote (IPR003954),Polyadenylate binding protein%2C human types 1%2C 2%2C 3%2C 4 (IPR006515),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033060I24,J013116F07;Oryzabase=17647;Expression=AK101706;TENOR=Os09t0115400-01;KEGG=Os09t0115400-01
Chr09	irgsp1_rep	five_prime_UTR	1217873	1218005	.	-	.	Parent=Os09t0115400-01
Chr09	irgsp1_rep	CDS	1217593	1217872	.	-	0	Parent=Os09t0115400-01
Chr09	irgsp1_rep	CDS	1216533	1216651	.	-	2	Parent=Os09t0115400-01
Chr09	irgsp1_rep	CDS	1215798	1216454	.	-	0	Parent=Os09t0115400-01
Chr09	irgsp1_rep	CDS	1215642	1215719	.	-	0	Parent=Os09t0115400-01
Chr09	irgsp1_rep	CDS	1215472	1215561	.	-	0	Parent=Os09t0115400-01
Chr09	irgsp1_rep	CDS	1215020	1215157	.	-	0	Parent=Os09t0115400-01
Chr09	irgsp1_rep	CDS	1213919	1214089	.	-	0	Parent=Os09t0115400-01
Chr09	irgsp1_rep	CDS	1213591	1213797	.	-	0	Parent=Os09t0115400-01
Chr09	irgsp1_rep	CDS	1213251	1213499	.	-	0	Parent=Os09t0115400-01
Chr09	irgsp1_rep	three_prime_UTR	1212964	1213250	.	-	.	Parent=Os09t0115400-01
Chr09	irgsp1_rep	mRNA	1212964	1216059	.	-	.	ID=Os09t0115400-03;Name=Os09t0115400-03;Locus_id=Os09g0115400;Oryzabase Gene Symbol Synonym(s)=OsPABPC1%2C PABPC1;Oryzabase Gene Name Synonym(s)=Polyadenylate-binding protein;Note=Hypothetical conserved gene.;Transcript_evidence=AK058316 (DDBJ%2C Best hit);ORF_evidence=A2YYH2 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723);InterPro=RNA recognition motif domain (IPR000504),Polyadenylate-binding protein/Hyperplastic disc protein (IPR002004),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-014-A07;Oryzabase=17647;Expression=AK058316;TENOR=Os09t0115400-03;KEGG=Os09t0115400-03
Chr09	irgsp1_rep	five_prime_UTR	1216059	1216059	.	-	.	Parent=Os09t0115400-03
Chr09	irgsp1_rep	CDS	1215798	1216058	.	-	0	Parent=Os09t0115400-03
Chr09	irgsp1_rep	CDS	1215642	1215719	.	-	0	Parent=Os09t0115400-03
Chr09	irgsp1_rep	CDS	1215472	1215561	.	-	0	Parent=Os09t0115400-03
Chr09	irgsp1_rep	CDS	1215020	1215157	.	-	0	Parent=Os09t0115400-03
Chr09	irgsp1_rep	CDS	1213919	1214089	.	-	0	Parent=Os09t0115400-03
Chr09	irgsp1_rep	CDS	1213591	1213797	.	-	0	Parent=Os09t0115400-03
Chr09	irgsp1_rep	CDS	1213251	1213499	.	-	0	Parent=Os09t0115400-03
Chr09	irgsp1_rep	three_prime_UTR	1212964	1213250	.	-	.	Parent=Os09t0115400-03
Chr09	irgsp1_rep	mRNA	1213048	1215869	.	-	.	ID=Os09t0115400-04;Name=Os09t0115400-04;Locus_id=Os09g0115400;Oryzabase Gene Symbol Synonym(s)=OsPABPC1%2C PABPC1;Oryzabase Gene Name Synonym(s)=Polyadenylate-binding protein;Note=Hypothetical conserved gene.;Transcript_evidence=AK058314 (DDBJ%2C Best hit);ORF_evidence=A2YYH2 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723);InterPro=RNA recognition motif domain (IPR000504),Polyadenylate-binding protein/Hyperplastic disc protein (IPR002004),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-014-A04;Oryzabase=17647;Expression=AK058314;TENOR=Os09t0115400-04;KEGG=Os09t0115400-04
Chr09	irgsp1_rep	CDS	1215798	1215869	.	-	0	Parent=Os09t0115400-04
Chr09	irgsp1_rep	CDS	1215642	1215719	.	-	0	Parent=Os09t0115400-04
Chr09	irgsp1_rep	CDS	1215472	1215561	.	-	0	Parent=Os09t0115400-04
Chr09	irgsp1_rep	CDS	1215020	1215157	.	-	0	Parent=Os09t0115400-04
Chr09	irgsp1_rep	CDS	1213919	1214089	.	-	0	Parent=Os09t0115400-04
Chr09	irgsp1_rep	CDS	1213591	1213797	.	-	0	Parent=Os09t0115400-04
Chr09	irgsp1_rep	CDS	1213251	1213499	.	-	0	Parent=Os09t0115400-04
Chr09	irgsp1_rep	three_prime_UTR	1213048	1213250	.	-	.	Parent=Os09t0115400-04
Chr09	irgsp1_rep	mRNA	1213266	1217909	.	+	.	ID=Os09t0115466-00;Name=Os09t0115466-00;Locus_id=Os09g0115466;Note=Hypothetical protein.;Transcript_evidence=tplb0036a07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0115466-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	1213266	1213484	.	+	.	Parent=Os09t0115466-00
Chr09	irgsp1_rep	five_prime_UTR	1213582	1213845	.	+	.	Parent=Os09t0115466-00
Chr09	irgsp1_rep	five_prime_UTR	1213966	1214104	.	+	.	Parent=Os09t0115466-00
Chr09	irgsp1_rep	five_prime_UTR	1215043	1215165	.	+	.	Parent=Os09t0115466-00
Chr09	irgsp1_rep	five_prime_UTR	1215478	1215563	.	+	.	Parent=Os09t0115466-00
Chr09	irgsp1_rep	five_prime_UTR	1215644	1215729	.	+	.	Parent=Os09t0115466-00
Chr09	irgsp1_rep	five_prime_UTR	1215805	1216384	.	+	.	Parent=Os09t0115466-00
Chr09	irgsp1_rep	CDS	1216385	1216451	.	+	0	Parent=Os09t0115466-00
Chr09	irgsp1_rep	CDS	1216529	1216645	.	+	2	Parent=Os09t0115466-00
Chr09	irgsp1_rep	CDS	1217589	1217909	.	+	2	Parent=Os09t0115466-00
Chr09	irgsp1_rep	mRNA	1221177	1224778	.	-	.	ID=Os09t0115500-01;Name=Os09t0115500-01;Locus_id=Os09g0115500;Oryzabase Gene Symbol Synonym(s)=OsCBSX2;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSX2%2C CBS domain containing protein OsCBSX2;Note=Proteinase inhibitor I3%2C Kunitz legume domain containing protein.;Transcript_evidence=AK061717 (DDBJ%2C Best hit);ORF_evidence=NP_001147441.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Cystathionine beta-synthase%2C core (IPR000644);NIAS_FLcDNA=001-037-H08;Oryzabase=10319;Expression=AK061717;TENOR=Os09t0115500-01;KEGG=Os09t0115500-01
Chr09	irgsp1_rep	five_prime_UTR	1224594	1224778	.	-	.	Parent=Os09t0115500-01
Chr09	irgsp1_rep	CDS	1224420	1224593	.	-	0	Parent=Os09t0115500-01
Chr09	irgsp1_rep	CDS	1223765	1223852	.	-	0	Parent=Os09t0115500-01
Chr09	irgsp1_rep	CDS	1223602	1223666	.	-	2	Parent=Os09t0115500-01
Chr09	irgsp1_rep	CDS	1223120	1223168	.	-	0	Parent=Os09t0115500-01
Chr09	irgsp1_rep	CDS	1222598	1222656	.	-	2	Parent=Os09t0115500-01
Chr09	irgsp1_rep	CDS	1221804	1221919	.	-	0	Parent=Os09t0115500-01
Chr09	irgsp1_rep	CDS	1221662	1221719	.	-	1	Parent=Os09t0115500-01
Chr09	irgsp1_rep	CDS	1221510	1221584	.	-	0	Parent=Os09t0115500-01
Chr09	irgsp1_rep	three_prime_UTR	1221177	1221509	.	-	.	Parent=Os09t0115500-01
Chr09	irgsp1_rep	mRNA	1221160	1224737	.	-	.	ID=Os09t0115500-02;Name=Os09t0115500-02;Locus_id=Os09g0115500;Oryzabase Gene Symbol Synonym(s)=OsCBSX2;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSX2%2C CBS domain containing protein OsCBSX2;Note=Proteinase inhibitor I3%2C Kunitz legume domain containing protein.;Transcript_evidence=AK065986 (DDBJ%2C Best hit);ORF_evidence=NP_001147441.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Cystathionine beta-synthase%2C core (IPR000644);NIAS_FLcDNA=J013043C13;Oryzabase=10319;TENOR=Os09t0115500-02
Chr09	irgsp1_rep	five_prime_UTR	1224594	1224737	.	-	.	Parent=Os09t0115500-02
Chr09	irgsp1_rep	CDS	1224420	1224593	.	-	0	Parent=Os09t0115500-02
Chr09	irgsp1_rep	CDS	1223765	1223852	.	-	0	Parent=Os09t0115500-02
Chr09	irgsp1_rep	CDS	1223602	1223666	.	-	2	Parent=Os09t0115500-02
Chr09	irgsp1_rep	CDS	1223120	1223168	.	-	0	Parent=Os09t0115500-02
Chr09	irgsp1_rep	CDS	1222598	1222656	.	-	2	Parent=Os09t0115500-02
Chr09	irgsp1_rep	CDS	1221804	1221919	.	-	0	Parent=Os09t0115500-02
Chr09	irgsp1_rep	CDS	1221662	1221719	.	-	1	Parent=Os09t0115500-02
Chr09	irgsp1_rep	CDS	1221510	1221584	.	-	0	Parent=Os09t0115500-02
Chr09	irgsp1_rep	three_prime_UTR	1221160	1221509	.	-	.	Parent=Os09t0115500-02
Chr09	irgsp1_rep	mRNA	1226595	1238512	.	-	.	ID=Os09t0115600-01;Name=Os09t0115600-01;Locus_id=Os09g0115600;Note=PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain domain containing protein.;Transcript_evidence=AK060378 (DDBJ%2C Best hit);ORF_evidence=XP_002866716.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: intracellular signal transduction (GO:0035556),Molecular Function: phospholipase C activity (GO:0004629),Molecular Function: phosphoric diester hydrolase activity (GO:0008081);InterPro=Phospholipase C%2C phosphatidylinositol-specific %2C X domain (IPR000909),PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain (IPR017946);NIAS_FLcDNA=001-009-D07;TENOR=Os09t0115600-01
Chr09	irgsp1_rep	five_prime_UTR	1238319	1238512	.	-	.	Parent=Os09t0115600-01
Chr09	irgsp1_rep	CDS	1238250	1238318	.	-	0	Parent=Os09t0115600-01
Chr09	irgsp1_rep	CDS	1237986	1238108	.	-	0	Parent=Os09t0115600-01
Chr09	irgsp1_rep	CDS	1237746	1237883	.	-	0	Parent=Os09t0115600-01
Chr09	irgsp1_rep	CDS	1237547	1237645	.	-	0	Parent=Os09t0115600-01
Chr09	irgsp1_rep	CDS	1236332	1236635	.	-	0	Parent=Os09t0115600-01
Chr09	irgsp1_rep	CDS	1227410	1227630	.	-	2	Parent=Os09t0115600-01
Chr09	irgsp1_rep	CDS	1227237	1227323	.	-	0	Parent=Os09t0115600-01
Chr09	irgsp1_rep	CDS	1226881	1227078	.	-	0	Parent=Os09t0115600-01
Chr09	irgsp1_rep	three_prime_UTR	1226595	1226880	.	-	.	Parent=Os09t0115600-01
Chr09	irgsp1_rep	mRNA	1226602	1238465	.	-	.	ID=Os09t0115600-02;Name=Os09t0115600-02;Locus_id=Os09g0115600;Note=PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain domain containing protein.;Transcript_evidence=AK099343 (DDBJ%2C Best hit);ORF_evidence=XP_002866716.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: intracellular signal transduction (GO:0035556),Molecular Function: phospholipase C activity (GO:0004629),Molecular Function: phosphoric diester hydrolase activity (GO:0008081);InterPro=Phospholipase C%2C phosphatidylinositol-specific %2C X domain (IPR000909),PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain (IPR017946);NIAS_FLcDNA=J033028L08;TENOR=Os09t0115600-02
Chr09	irgsp1_rep	five_prime_UTR	1238319	1238465	.	-	.	Parent=Os09t0115600-02
Chr09	irgsp1_rep	CDS	1238250	1238318	.	-	0	Parent=Os09t0115600-02
Chr09	irgsp1_rep	CDS	1237986	1238108	.	-	0	Parent=Os09t0115600-02
Chr09	irgsp1_rep	CDS	1237746	1237883	.	-	0	Parent=Os09t0115600-02
Chr09	irgsp1_rep	CDS	1237547	1237645	.	-	0	Parent=Os09t0115600-02
Chr09	irgsp1_rep	CDS	1236332	1236635	.	-	0	Parent=Os09t0115600-02
Chr09	irgsp1_rep	CDS	1227410	1227630	.	-	2	Parent=Os09t0115600-02
Chr09	irgsp1_rep	CDS	1227237	1227323	.	-	0	Parent=Os09t0115600-02
Chr09	irgsp1_rep	CDS	1226881	1227078	.	-	0	Parent=Os09t0115600-02
Chr09	irgsp1_rep	three_prime_UTR	1226602	1226880	.	-	.	Parent=Os09t0115600-02
Chr09	irgsp1_rep	mRNA	1255785	1257020	.	+	.	ID=Os09t0115900-01;Name=Os09t0115900-01;Locus_id=Os09g0115900;Note=EF-HAND 1 domain containing protein.;Transcript_evidence=AK068597 (DDBJ%2C Best hit);ORF_evidence=F2EJ14 (UniProt);NIAS_FLcDNA=J013153N07;Expression=AK068597;TENOR=Os09t0115900-01;KEGG=Os09t0115900-01
Chr09	irgsp1_rep	five_prime_UTR	1255785	1255832	.	+	.	Parent=Os09t0115900-01
Chr09	irgsp1_rep	CDS	1255833	1255998	.	+	0	Parent=Os09t0115900-01
Chr09	irgsp1_rep	CDS	1256085	1256776	.	+	2	Parent=Os09t0115900-01
Chr09	irgsp1_rep	three_prime_UTR	1256777	1257020	.	+	.	Parent=Os09t0115900-01
Chr09	irgsp1_rep	mRNA	1256829	1256972	.	+	.	ID=Os09t0115900-02;Name=Os09t0115900-02;Locus_id=Os09g0115900;Note=Non-protein coding transcript.;Transcript_evidence=AK060240 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-003-E06;TENOR=Os09t0115900-02
Chr09	irgsp1_rep	exon	1256829	1256972	.	+	.	Parent=Os09t0115900-02
Chr09	irgsp1_rep	mRNA	1267679	1271417	.	+	.	ID=Os09t0115950-01;Name=Os09t0115950-01;Locus_id=Os09g0115950;Note=Non-protein coding transcript.;Transcript_evidence=AK288463 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090036E20;TENOR=Os09t0115950-01
Chr09	irgsp1_rep	exon	1267679	1271417	.	+	.	Parent=Os09t0115950-01
Chr09	irgsp1_rep	mRNA	1272405	1272962	.	-	.	ID=Os09t0116000-00;Name=Os09t0116000-00;Locus_id=Os09g0116000;CGSNL Gene Symbol=MADS77;CGSNL Gene Name=MADS BOX GENE 77;Oryzabase Gene Symbol Synonym(s)=OsMADS77;Oryzabase Gene Name Synonym(s)=MADS box gene77%2C MADS box gene 77%2C MADS-box transcription factor 77;Note=Transcription factor%2C MADS-box domain containing protein.;Transcript_evidence=EU969208 (DDBJ);ORF_evidence=Q6YW95 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box (IPR002100);Oryzabase=12313;TENOR=Os09t0116000-00
Chr09	irgsp1_rep	CDS	1272405	1272962	.	-	0	Parent=Os09t0116000-00
Chr09	irgsp1_rep	mRNA	1278420	1282926	.	-	.	ID=Os09t0116050-00;Name=Os09t0116050-00;Locus_id=Os09g0116050;Note=Protein of unknown function DUF597 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8BCY6 (UniProt);InterPro=Protein of unknown function DUF597 (IPR006734);TENOR=Os09t0116050-00
Chr09	irgsp1_rep	CDS	1282861	1282926	.	-	0	Parent=Os09t0116050-00
Chr09	irgsp1_rep	CDS	1280917	1281294	.	-	0	Parent=Os09t0116050-00
Chr09	irgsp1_rep	CDS	1278818	1278967	.	-	0	Parent=Os09t0116050-00
Chr09	irgsp1_rep	CDS	1278420	1278587	.	-	0	Parent=Os09t0116050-00
Chr09	irgsp1_rep	mRNA	1288158	1291930	.	-	.	ID=Os09t0116100-01;Name=Os09t0116100-01;Locus_id=Os09g0116100;Note=Conserved hypothetical protein.;Transcript_evidence=AK288371 (DDBJ%2C Best hit);ORF_evidence=A2YYJ3 (UniProt);NIAS_FLcDNA=J090026F03;TENOR=Os09t0116100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	1288253	1291930	.	-	.	Parent=Os09t0116100-01
Chr09	irgsp1_rep	CDS	1288160	1288252	.	-	0	Parent=Os09t0116100-01
Chr09	irgsp1_rep	three_prime_UTR	1288158	1288159	.	-	.	Parent=Os09t0116100-01
Chr09	irgsp1_rep	mRNA	1298966	1312555	.	+	.	ID=Os09t0116400-01;Name=Os09t0116400-01;Locus_id=Os09g0116400;Oryzabase Gene Symbol Synonym(s)=BIP111;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 111%2C BRI1-interacting protein 111%2C brassinosteroid receptor kinase-interacting protein 111;Note=CCAAT-binding factor domain containing protein.;Transcript_evidence=AK101351 (DDBJ%2C Best hit);ORF_evidence=NP_177388.2 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=CCAAT-binding factor (IPR005612),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033034O16;Oryzabase=13696;Expression=AK101351;TENOR=Os09t0116400-01;KEGG=Os09t0116400-01
Chr09	irgsp1_rep	five_prime_UTR	1298966	1299177	.	+	.	Parent=Os09t0116400-01
Chr09	irgsp1_rep	CDS	1299178	1299853	.	+	0	Parent=Os09t0116400-01
Chr09	irgsp1_rep	CDS	1300697	1300772	.	+	2	Parent=Os09t0116400-01
Chr09	irgsp1_rep	CDS	1301062	1301181	.	+	1	Parent=Os09t0116400-01
Chr09	irgsp1_rep	CDS	1302215	1302290	.	+	1	Parent=Os09t0116400-01
Chr09	irgsp1_rep	CDS	1304055	1304123	.	+	0	Parent=Os09t0116400-01
Chr09	irgsp1_rep	CDS	1304307	1304387	.	+	0	Parent=Os09t0116400-01
Chr09	irgsp1_rep	CDS	1304586	1304657	.	+	0	Parent=Os09t0116400-01
Chr09	irgsp1_rep	CDS	1304888	1304980	.	+	0	Parent=Os09t0116400-01
Chr09	irgsp1_rep	CDS	1305192	1305371	.	+	0	Parent=Os09t0116400-01
Chr09	irgsp1_rep	CDS	1305846	1305929	.	+	0	Parent=Os09t0116400-01
Chr09	irgsp1_rep	CDS	1306017	1306160	.	+	0	Parent=Os09t0116400-01
Chr09	irgsp1_rep	CDS	1306377	1306466	.	+	0	Parent=Os09t0116400-01
Chr09	irgsp1_rep	CDS	1309270	1309352	.	+	0	Parent=Os09t0116400-01
Chr09	irgsp1_rep	CDS	1309428	1309709	.	+	1	Parent=Os09t0116400-01
Chr09	irgsp1_rep	CDS	1310010	1310247	.	+	1	Parent=Os09t0116400-01
Chr09	irgsp1_rep	CDS	1311595	1312245	.	+	0	Parent=Os09t0116400-01
Chr09	irgsp1_rep	three_prime_UTR	1312246	1312555	.	+	.	Parent=Os09t0116400-01
Chr09	irgsp1_rep	mRNA	1299752	1312021	.	+	.	ID=Os09t0116400-02;Name=Os09t0116400-02;Locus_id=Os09g0116400;Oryzabase Gene Symbol Synonym(s)=BIP111;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 111%2C BRI1-interacting protein 111%2C brassinosteroid receptor kinase-interacting protein 111;Note=Similar to predicted protein.;Transcript_evidence=AK101139 (DDBJ%2C Best hit);ORF_evidence=NP_177388.2 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=CCAAT-binding factor (IPR005612),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033026L02;Oryzabase=13696;TENOR=Os09t0116400-02
Chr09	irgsp1_rep	five_prime_UTR	1299752	1299753	.	+	.	Parent=Os09t0116400-02
Chr09	irgsp1_rep	CDS	1299754	1299853	.	+	0	Parent=Os09t0116400-02
Chr09	irgsp1_rep	CDS	1300697	1300772	.	+	2	Parent=Os09t0116400-02
Chr09	irgsp1_rep	CDS	1301062	1301181	.	+	1	Parent=Os09t0116400-02
Chr09	irgsp1_rep	CDS	1302215	1302290	.	+	1	Parent=Os09t0116400-02
Chr09	irgsp1_rep	CDS	1304055	1304123	.	+	0	Parent=Os09t0116400-02
Chr09	irgsp1_rep	CDS	1304307	1304387	.	+	0	Parent=Os09t0116400-02
Chr09	irgsp1_rep	CDS	1304586	1304657	.	+	0	Parent=Os09t0116400-02
Chr09	irgsp1_rep	CDS	1304888	1304980	.	+	0	Parent=Os09t0116400-02
Chr09	irgsp1_rep	CDS	1305192	1305371	.	+	0	Parent=Os09t0116400-02
Chr09	irgsp1_rep	CDS	1305846	1305929	.	+	0	Parent=Os09t0116400-02
Chr09	irgsp1_rep	CDS	1306017	1306160	.	+	0	Parent=Os09t0116400-02
Chr09	irgsp1_rep	CDS	1306377	1306466	.	+	0	Parent=Os09t0116400-02
Chr09	irgsp1_rep	CDS	1309270	1309352	.	+	0	Parent=Os09t0116400-02
Chr09	irgsp1_rep	CDS	1309428	1309709	.	+	1	Parent=Os09t0116400-02
Chr09	irgsp1_rep	CDS	1310010	1310247	.	+	1	Parent=Os09t0116400-02
Chr09	irgsp1_rep	CDS	1311595	1312021	.	+	0	Parent=Os09t0116400-02
Chr09	irgsp1_rep	mRNA	1317066	1317796	.	-	.	ID=Os09t0116600-01;Name=Os09t0116600-01;Locus_id=Os09g0116600;Note=Hypothetical gene.;Transcript_evidence=AK059180 (DDBJ%2C Best hit),AK099045 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-023-F12,J013139N10;TENOR=Os09t0116600-01
Chr09	irgsp1_rep	five_prime_UTR	1317795	1317796	.	-	.	Parent=Os09t0116600-01
Chr09	irgsp1_rep	CDS	1317543	1317794	.	-	0	Parent=Os09t0116600-01
Chr09	irgsp1_rep	three_prime_UTR	1317066	1317542	.	-	.	Parent=Os09t0116600-01
Chr09	irgsp1_rep	mRNA	1325181	1325826	.	-	.	ID=Os09t0116800-01;Name=Os09t0116800-01;Locus_id=Os09g0116800;RAP-DB Gene Symbol Synonym(s)=MADS78;RAP-DB Gene Name Synonym(s)=MADS box gene 78;CGSNL Gene Symbol=MADS78;CGSNL Gene Name=MADS BOX GENE 78;Oryzabase Gene Symbol Synonym(s)=OsMADS78;Oryzabase Gene Name Synonym(s)=MADS box gene78%2C MADS box gene 78%2C MADS-box transcription factor 78;Note=MADS-box transcription factor%2C Regulation of early seed development;Transcript_evidence=EU975895 (maize);ORF_evidence=Q6YTZ9;GO=Biological Process: positive regulation of transcription by RNA polymerase II (GO:0045944),Molecular Function: RNA polymerase II regulatory region sequence-specific DNA binding (GO:0000977),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box superfamily (IPR036879),Transcription factor%2C MADS-box (IPR002100),MADS MEF2-like (IPR033896);Manual Curation=December 10%2C 2019;Literature_PMID=31818903;Oryzabase=12314;TENOR=Os09t0116800-00;Subcellular location=nucleus (GO:0005634), cytosol (GO:0005829)
Chr09	irgsp1_rep	five_prime_UTR	1325814	1325826	.	-	.	Parent=Os09t0116800-01
Chr09	irgsp1_rep	CDS	1325181	1325813	.	-	0	Parent=Os09t0116800-01
Chr09	irgsp1_rep	mRNA	1328971	1332277	.	-	.	ID=Os09t0116900-01;Name=Os09t0116900-01;Locus_id=Os09g0116900;Note=Conserved hypothetical protein.;Transcript_evidence=AK071936 (DDBJ%2C Best hit);ORF_evidence=B9FWU4 (UniProt);NIAS_FLcDNA=J013074A19;Expression=AK071936;TENOR=Os09t0116900-01;KEGG=Os09t0116900-01
Chr09	irgsp1_rep	five_prime_UTR	1332262	1332277	.	-	.	Parent=Os09t0116900-01
Chr09	irgsp1_rep	CDS	1331974	1332261	.	-	0	Parent=Os09t0116900-01
Chr09	irgsp1_rep	three_prime_UTR	1330969	1331973	.	-	.	Parent=Os09t0116900-01
Chr09	irgsp1_rep	three_prime_UTR	1330590	1330770	.	-	.	Parent=Os09t0116900-01
Chr09	irgsp1_rep	three_prime_UTR	1330438	1330492	.	-	.	Parent=Os09t0116900-01
Chr09	irgsp1_rep	three_prime_UTR	1330226	1330283	.	-	.	Parent=Os09t0116900-01
Chr09	irgsp1_rep	three_prime_UTR	1328971	1329399	.	-	.	Parent=Os09t0116900-01
Chr09	irgsp1_rep	mRNA	1464329	1470406	.	-	.	ID=Os09t0119100-01;Name=Os09t0119100-01;Locus_id=Os09g0119100;Note=UBA-like domain containing protein.;Transcript_evidence=AK102931 (DDBJ%2C Best hit);ORF_evidence=A3BW42 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=UBA-like (IPR009060);NIAS_FLcDNA=J033114H01;Expression=AK102931;TENOR=Os09t0119100-01;KEGG=Os09t0119100-01
Chr09	irgsp1_rep	five_prime_UTR	1470304	1470406	.	-	.	Parent=Os09t0119100-01
Chr09	irgsp1_rep	CDS	1470124	1470303	.	-	0	Parent=Os09t0119100-01
Chr09	irgsp1_rep	CDS	1468904	1469057	.	-	0	Parent=Os09t0119100-01
Chr09	irgsp1_rep	CDS	1467604	1467818	.	-	2	Parent=Os09t0119100-01
Chr09	irgsp1_rep	CDS	1464834	1465007	.	-	0	Parent=Os09t0119100-01
Chr09	irgsp1_rep	CDS	1464637	1464723	.	-	0	Parent=Os09t0119100-01
Chr09	irgsp1_rep	three_prime_UTR	1464329	1464636	.	-	.	Parent=Os09t0119100-01
Chr09	irgsp1_rep	mRNA	1503778	1505356	.	-	.	ID=Os09t0119600-01;Name=Os09t0119600-01;Locus_id=Os09g0119600;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK059022 (DDBJ%2C Best hit);ORF_evidence=C4MF39 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=001-021-B05;Expression=AK059022;TENOR=Os09t0119600-01;KEGG=Os09t0119600-01
Chr09	irgsp1_rep	five_prime_UTR	1505347	1505356	.	-	.	Parent=Os09t0119600-01
Chr09	irgsp1_rep	CDS	1503832	1505346	.	-	0	Parent=Os09t0119600-01
Chr09	irgsp1_rep	three_prime_UTR	1503778	1503831	.	-	.	Parent=Os09t0119600-01
Chr09	irgsp1_rep	mRNA	1535607	1538149	.	-	.	ID=Os09t0120033-01;Name=Os09t0120033-01;Locus_id=Os09g0120033;Note=Hypothetical protein.;Transcript_evidence=AK069069 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023009A21;TENOR=Os09t0120033-01
Chr09	irgsp1_rep	five_prime_UTR	1537943	1538149	.	-	.	Parent=Os09t0120033-01
Chr09	irgsp1_rep	CDS	1537562	1537942	.	-	0	Parent=Os09t0120033-01
Chr09	irgsp1_rep	CDS	1537073	1537129	.	-	0	Parent=Os09t0120033-01
Chr09	irgsp1_rep	three_prime_UTR	1537064	1537072	.	-	.	Parent=Os09t0120033-01
Chr09	irgsp1_rep	three_prime_UTR	1535607	1535896	.	-	.	Parent=Os09t0120033-01
Chr09	irgsp1_rep	mRNA	1535519	1537191	.	-	.	ID=Os09t0120033-02;Name=Os09t0120033-02;Locus_id=Os09g0120033;Note=Conserved hypothetical protein.;Transcript_evidence=AK106378 (DDBJ%2C Best hit);ORF_evidence=Q33AX5 (UniProt);NIAS_FLcDNA=002-102-D08;TENOR=Os09t0120033-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	1537176	1537191	.	-	.	Parent=Os09t0120033-02
Chr09	irgsp1_rep	CDS	1537044	1537175	.	-	0	Parent=Os09t0120033-02
Chr09	irgsp1_rep	three_prime_UTR	1535519	1537043	.	-	.	Parent=Os09t0120033-02
Chr09	irgsp1_rep	mRNA	1546162	1549374	.	+	.	ID=Os09t0120100-00;Name=Os09t0120100-00;Locus_id=Os09g0120100;Note=Conserved hypothetical protein.;Transcript_evidence=AK355909 (DDBJ);ORF_evidence=NP_001062594.1 (RefSeq);TENOR=Os09t0120100-00
Chr09	irgsp1_rep	CDS	1546162	1546741	.	+	0	Parent=Os09t0120100-00
Chr09	irgsp1_rep	CDS	1548249	1548463	.	+	2	Parent=Os09t0120100-00
Chr09	irgsp1_rep	CDS	1548778	1549362	.	+	0	Parent=Os09t0120100-00
Chr09	irgsp1_rep	three_prime_UTR	1549363	1549374	.	+	.	Parent=Os09t0120100-00
Chr09	irgsp1_rep	mRNA	1577123	1577899	.	+	.	ID=Os09t0120600-00;Name=Os09t0120600-00;Locus_id=Os09g0120600;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6K2U8 (UniProt);GO=Biological Process: negative regulation of translation (GO:0017148),Molecular Function: rRNA N-glycosylase activity (GO:0030598);InterPro=Ribosome-inactivating protein (IPR001574),Ribosome-inactivating protein%2C subdomain 1 (IPR016138);TENOR=Os09t0120600-00;KEGG=Os09t0120600-00
Chr09	irgsp1_rep	CDS	1577123	1577899	.	+	0	Parent=Os09t0120600-00
Chr09	irgsp1_rep	mRNA	1612210	1617514	.	-	.	ID=Os09t0120800-01;Name=Os09t0120800-01;Locus_id=Os09g0120800;Note=Similar to ATPase%2C calcium-transporting-related (Fragment).;Transcript_evidence=AK066284 (DDBJ%2C Best hit);ORF_evidence=Q53JD1 (UniProt);InterPro=ATPase%2C P-type%2C cytoplasmic domain N (IPR023299);NIAS_FLcDNA=J013067C01;TENOR=Os09t0120800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	1616800	1617514	.	-	.	Parent=Os09t0120800-01
Chr09	irgsp1_rep	CDS	1614865	1614954	.	-	0	Parent=Os09t0120800-01
Chr09	irgsp1_rep	CDS	1613728	1613825	.	-	0	Parent=Os09t0120800-01
Chr09	irgsp1_rep	CDS	1613495	1613637	.	-	1	Parent=Os09t0120800-01
Chr09	irgsp1_rep	CDS	1613352	1613383	.	-	2	Parent=Os09t0120800-01
Chr09	irgsp1_rep	three_prime_UTR	1612588	1613351	.	-	.	Parent=Os09t0120800-01
Chr09	irgsp1_rep	three_prime_UTR	1612210	1612502	.	-	.	Parent=Os09t0120800-01
Chr09	irgsp1_rep	mRNA	1615422	1615870	.	-	.	ID=Os09t0120900-01;Name=Os09t0120900-01;Locus_id=Os09g0120900;Note=Non-protein coding transcript.;Transcript_evidence=AK063009 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-110-A03;TENOR=Os09t0120900-01
Chr09	irgsp1_rep	exon	1615422	1615870	.	-	.	Parent=Os09t0120900-01
Chr09	irgsp1_rep	mRNA	1636020	1638966	.	+	.	ID=Os09t0121000-01;Name=Os09t0121000-01;Locus_id=Os09g0121000;Oryzabase Gene Symbol Synonym(s)=SMC6;Oryzabase Gene Name Synonym(s)=structural maintenance of Chromosomes protein 6;Note=Similar to SMC6 protein.;Transcript_evidence=AK106637 (DDBJ%2C Best hit);ORF_evidence=Q8GU52 (UniProt);InterPro=RecF/RecN/SMC (IPR003395);NIAS_FLcDNA=002-113-D11;Oryzabase=13984;Expression=AK106637;TENOR=Os09t0121000-01;KEGG=Os09t0121000-01
Chr09	irgsp1_rep	five_prime_UTR	1636020	1636080	.	+	.	Parent=Os09t0121000-01
Chr09	irgsp1_rep	CDS	1636081	1636186	.	+	0	Parent=Os09t0121000-01
Chr09	irgsp1_rep	CDS	1636276	1636381	.	+	2	Parent=Os09t0121000-01
Chr09	irgsp1_rep	CDS	1637403	1637550	.	+	1	Parent=Os09t0121000-01
Chr09	irgsp1_rep	three_prime_UTR	1637551	1638966	.	+	.	Parent=Os09t0121000-01
Chr09	irgsp1_rep	mRNA	1642224	1656255	.	+	.	ID=Os09t0121050-00;Name=Os09t0121050-00;Locus_id=Os09g0121050;Note=Similar to SMC6 protein.;Transcript_evidence=AK355795 (DDBJ);ORF_evidence=Q8GU52 (UniProt);TENOR=Os09t0121050-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	1642224	1642427	.	+	0	Parent=Os09t0121050-00
Chr09	irgsp1_rep	CDS	1643115	1643234	.	+	0	Parent=Os09t0121050-00
Chr09	irgsp1_rep	CDS	1644035	1644169	.	+	0	Parent=Os09t0121050-00
Chr09	irgsp1_rep	CDS	1644817	1644893	.	+	0	Parent=Os09t0121050-00
Chr09	irgsp1_rep	CDS	1644969	1645044	.	+	1	Parent=Os09t0121050-00
Chr09	irgsp1_rep	CDS	1646088	1646162	.	+	0	Parent=Os09t0121050-00
Chr09	irgsp1_rep	CDS	1646259	1646363	.	+	0	Parent=Os09t0121050-00
Chr09	irgsp1_rep	CDS	1647739	1647905	.	+	0	Parent=Os09t0121050-00
Chr09	irgsp1_rep	CDS	1647990	1648092	.	+	1	Parent=Os09t0121050-00
Chr09	irgsp1_rep	CDS	1648474	1648586	.	+	0	Parent=Os09t0121050-00
Chr09	irgsp1_rep	CDS	1650195	1650399	.	+	1	Parent=Os09t0121050-00
Chr09	irgsp1_rep	CDS	1650461	1650589	.	+	0	Parent=Os09t0121050-00
Chr09	irgsp1_rep	CDS	1650691	1650805	.	+	0	Parent=Os09t0121050-00
Chr09	irgsp1_rep	CDS	1652308	1652348	.	+	2	Parent=Os09t0121050-00
Chr09	irgsp1_rep	three_prime_UTR	1652349	1652491	.	+	.	Parent=Os09t0121050-00
Chr09	irgsp1_rep	three_prime_UTR	1652903	1653039	.	+	.	Parent=Os09t0121050-00
Chr09	irgsp1_rep	three_prime_UTR	1653662	1653764	.	+	.	Parent=Os09t0121050-00
Chr09	irgsp1_rep	three_prime_UTR	1655097	1655176	.	+	.	Parent=Os09t0121050-00
Chr09	irgsp1_rep	three_prime_UTR	1655301	1655379	.	+	.	Parent=Os09t0121050-00
Chr09	irgsp1_rep	three_prime_UTR	1655529	1655586	.	+	.	Parent=Os09t0121050-00
Chr09	irgsp1_rep	three_prime_UTR	1655777	1655874	.	+	.	Parent=Os09t0121050-00
Chr09	irgsp1_rep	three_prime_UTR	1655961	1656055	.	+	.	Parent=Os09t0121050-00
Chr09	irgsp1_rep	three_prime_UTR	1656149	1656255	.	+	.	Parent=Os09t0121050-00
Chr09	irgsp1_rep	mRNA	1655097	1656212	.	-	.	ID=Os09t0121075-00;Name=Os09t0121075-00;Locus_id=Os09g0121075;Note=Non-protein coding transcript.;Transcript_evidence=AM939958 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0121075-00
Chr09	irgsp1_rep	exon	1656145	1656212	.	-	.	Parent=Os09t0121075-00
Chr09	irgsp1_rep	exon	1655960	1656051	.	-	.	Parent=Os09t0121075-00
Chr09	irgsp1_rep	exon	1655765	1655873	.	-	.	Parent=Os09t0121075-00
Chr09	irgsp1_rep	exon	1655289	1655422	.	-	.	Parent=Os09t0121075-00
Chr09	irgsp1_rep	exon	1655097	1655165	.	-	.	Parent=Os09t0121075-00
Chr09	irgsp1_rep	mRNA	1721391	1723864	.	+	.	ID=Os09t0121900-00;Name=Os09t0121900-00;Locus_id=Os09g0121900;Note=Similar to Isoamyl acetate-hydrolyzing esterase.;Transcript_evidence=ab initio prediction;ORF_evidence=B6THH7 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087),Esterase%2C SGNH hydrolase-type (IPR013830),Esterase%2C SGNH hydrolase-type%2C subgroup (IPR013831);TENOR=Os09t0121900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	1721391	1721462	.	+	0	Parent=Os09t0121900-00
Chr09	irgsp1_rep	CDS	1721565	1721632	.	+	0	Parent=Os09t0121900-00
Chr09	irgsp1_rep	CDS	1722146	1722353	.	+	1	Parent=Os09t0121900-00
Chr09	irgsp1_rep	CDS	1723796	1723864	.	+	0	Parent=Os09t0121900-00
Chr09	irgsp1_rep	mRNA	1726956	1728653	.	+	.	ID=Os09t0122000-01;Name=Os09t0122000-01;Locus_id=Os09g0122000;Note=Hypothetical conserved gene.;Transcript_evidence=AK242186 (DDBJ%2C Best hit);ORF_evidence=A2YYK0 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J075161K18;TENOR=Os09t0122000-01;KEGG=Os09t0122000-01
Chr09	irgsp1_rep	five_prime_UTR	1726956	1727024	.	+	.	Parent=Os09t0122000-01
Chr09	irgsp1_rep	CDS	1727025	1727810	.	+	0	Parent=Os09t0122000-01
Chr09	irgsp1_rep	CDS	1727913	1728377	.	+	0	Parent=Os09t0122000-01
Chr09	irgsp1_rep	three_prime_UTR	1728378	1728653	.	+	.	Parent=Os09t0122000-01
Chr09	irgsp1_rep	mRNA	1750849	1752243	.	+	.	ID=Os09t0122100-00;Name=Os09t0122100-00;Locus_id=Os09g0122100;Note=Transposase%2C IS4-like domain containing protein.;Transcript_evidence=EU953241 (DDBJ);ORF_evidence=NP_001176912.1 (RefSeq);GO=Biological Process: transposition%2C DNA-mediated (GO:0006313),Molecular Function: DNA binding (GO:0003677),Molecular Function: transposase activity (GO:0004803);InterPro=Transposase%2C IS4-like (IPR002559);TENOR=Os09t0122100-00
Chr09	irgsp1_rep	CDS	1750849	1751442	.	+	0	Parent=Os09t0122100-00
Chr09	irgsp1_rep	CDS	1751542	1752243	.	+	0	Parent=Os09t0122100-00
Chr09	irgsp1_rep	mRNA	1752250	1754125	.	-	.	ID=Os09t0122200-00;Name=Os09t0122200-00;Locus_id=Os09g0122200;CGSNL Gene Symbol=MSL33;CGSNL Gene Name=MYB/SANT-LIKE 33;Oryzabase Gene Symbol Synonym(s)=OsMSL33;Oryzabase Gene Name Synonym(s)=Myb/SANT-LIKE 33;Note=Hypothetical conserved gene.;Transcript_evidence=AK106587 (DDBJ%2C Secondary hit);ORF_evidence=Q60DP5 (UniProt);InterPro=Myb/SANT-like domain (IPR024752);Oryzabase=22940;Expression=AK106587;TENOR=Os09t0122200-00;KEGG=Os09t0122200-00
Chr09	irgsp1_rep	five_prime_UTR	1754125	1754125	.	-	.	Parent=Os09t0122200-00
Chr09	irgsp1_rep	CDS	1753994	1754124	.	-	0	Parent=Os09t0122200-00
Chr09	irgsp1_rep	CDS	1753653	1753795	.	-	1	Parent=Os09t0122200-00
Chr09	irgsp1_rep	CDS	1753169	1753552	.	-	2	Parent=Os09t0122200-00
Chr09	irgsp1_rep	CDS	1752491	1753074	.	-	2	Parent=Os09t0122200-00
Chr09	irgsp1_rep	three_prime_UTR	1752250	1752490	.	-	.	Parent=Os09t0122200-00
Chr09	irgsp1_rep	mRNA	1755067	1760240	.	-	.	ID=Os09t0122300-01;Name=Os09t0122300-01;Locus_id=Os09g0122300;Note=Similar to Zinc knuckle family protein.;Transcript_evidence=AK288482 (DDBJ%2C Best hit);ORF_evidence=Q2QWS1 (UniProt);NIAS_FLcDNA=J090039P05;TENOR=Os09t0122300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	1755518	1760240	.	-	.	Parent=Os09t0122300-01
Chr09	irgsp1_rep	CDS	1755067	1755517	.	-	0	Parent=Os09t0122300-01
Chr09	irgsp1_rep	mRNA	1759074	1761787	.	+	.	ID=Os09t0122500-01;Name=Os09t0122500-01;Locus_id=Os09g0122500;Note=Similar to H0124E07.4 protein.;Transcript_evidence=AK241153 (DDBJ%2C Best hit);ORF_evidence=Q25AH9 (UniProt);NIAS_FLcDNA=J065113L16;TENOR=Os09t0122500-01;KEGG=Os09t0122500-01
Chr09	irgsp1_rep	five_prime_UTR	1759074	1759327	.	+	.	Parent=Os09t0122500-01
Chr09	irgsp1_rep	five_prime_UTR	1759402	1759422	.	+	.	Parent=Os09t0122500-01
Chr09	irgsp1_rep	CDS	1759423	1759494	.	+	0	Parent=Os09t0122500-01
Chr09	irgsp1_rep	CDS	1760258	1760321	.	+	0	Parent=Os09t0122500-01
Chr09	irgsp1_rep	CDS	1761540	1761655	.	+	2	Parent=Os09t0122500-01
Chr09	irgsp1_rep	three_prime_UTR	1761656	1761787	.	+	.	Parent=Os09t0122500-01
Chr09	irgsp1_rep	mRNA	1780100	1786097	.	+	.	ID=Os09t0123100-01;Name=Os09t0123100-01;Locus_id=Os09g0123100;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK103665 (DDBJ%2C Best hit);ORF_evidence=B9G261 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033135J15;Expression=AK103665;TENOR=Os09t0123100-01;KEGG=Os09t0123100-01
Chr09	irgsp1_rep	five_prime_UTR	1780100	1780308	.	+	.	Parent=Os09t0123100-01
Chr09	irgsp1_rep	CDS	1780309	1780494	.	+	0	Parent=Os09t0123100-01
Chr09	irgsp1_rep	CDS	1781185	1781271	.	+	0	Parent=Os09t0123100-01
Chr09	irgsp1_rep	CDS	1782578	1782754	.	+	0	Parent=Os09t0123100-01
Chr09	irgsp1_rep	CDS	1782927	1783013	.	+	0	Parent=Os09t0123100-01
Chr09	irgsp1_rep	CDS	1783087	1783158	.	+	0	Parent=Os09t0123100-01
Chr09	irgsp1_rep	CDS	1783910	1785784	.	+	0	Parent=Os09t0123100-01
Chr09	irgsp1_rep	three_prime_UTR	1785785	1786097	.	+	.	Parent=Os09t0123100-01
Chr09	irgsp1_rep	mRNA	1790628	1799469	.	+	.	ID=Os09t0123200-01;Name=Os09t0123200-01;Locus_id=Os09g0123200;RAP-DB Gene Symbol Synonym(s)=OsFCA;CGSNL Gene Symbol=FCA;CGSNL Gene Name=OSFCA PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsFCA%2C OsFCA-1%2C OsFCA-2%2C OsFCA-3%2C OsFCA-4%2C OsFCA-gamma;Oryzabase Gene Name Synonym(s)=OsFCA protein;Note=FCA-like protein%2C FCA gamma protein%2C Flowering time related protein involved in autonomous flowering pathway;Transcript_evidence=AK073225,AY730687 (Ilpoom);ORF_evidence=Q6K271;GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723),Molecular Function: protein binding (GO:0005515);InterPro=RNA-binding domain superfamily (IPR035979),WW domain superfamily (IPR036020),Paraneoplastic encephalomyelitis antigen (IPR002343),RNA recognition motif domain (IPR000504),WW domain (IPR001202);NIAS_FLcDNA=J033023C04;Manual Curation=September 25%2C 2017;Literature_PMID=16820865,16240176;Oryzabase=6144;Expression=AK073225;TENOR=Os09t0123200-01;KEGG=Os09t0123200-01
Chr09	irgsp1_rep	five_prime_UTR	1790628	1790725	.	+	.	Parent=Os09t0123200-01
Chr09	irgsp1_rep	CDS	1790726	1791065	.	+	0	Parent=Os09t0123200-01
Chr09	irgsp1_rep	CDS	1791729	1791799	.	+	2	Parent=Os09t0123200-01
Chr09	irgsp1_rep	CDS	1792262	1792340	.	+	0	Parent=Os09t0123200-01
Chr09	irgsp1_rep	CDS	1794847	1794929	.	+	2	Parent=Os09t0123200-01
Chr09	irgsp1_rep	CDS	1795021	1795072	.	+	0	Parent=Os09t0123200-01
Chr09	irgsp1_rep	CDS	1795326	1795393	.	+	2	Parent=Os09t0123200-01
Chr09	irgsp1_rep	CDS	1795567	1795633	.	+	0	Parent=Os09t0123200-01
Chr09	irgsp1_rep	CDS	1795714	1795793	.	+	2	Parent=Os09t0123200-01
Chr09	irgsp1_rep	CDS	1795864	1795928	.	+	0	Parent=Os09t0123200-01
Chr09	irgsp1_rep	CDS	1796073	1796135	.	+	1	Parent=Os09t0123200-01
Chr09	irgsp1_rep	CDS	1796559	1796715	.	+	1	Parent=Os09t0123200-01
Chr09	irgsp1_rep	CDS	1796799	1796876	.	+	0	Parent=Os09t0123200-01
Chr09	irgsp1_rep	CDS	1796965	1797492	.	+	0	Parent=Os09t0123200-01
Chr09	irgsp1_rep	CDS	1797609	1797785	.	+	0	Parent=Os09t0123200-01
Chr09	irgsp1_rep	CDS	1797867	1798076	.	+	0	Parent=Os09t0123200-01
Chr09	irgsp1_rep	CDS	1798558	1798617	.	+	0	Parent=Os09t0123200-01
Chr09	irgsp1_rep	CDS	1798713	1798751	.	+	0	Parent=Os09t0123200-01
Chr09	irgsp1_rep	three_prime_UTR	1798752	1798759	.	+	.	Parent=Os09t0123200-01
Chr09	irgsp1_rep	three_prime_UTR	1799162	1799469	.	+	.	Parent=Os09t0123200-01
Chr09	irgsp1_rep	mRNA	1795020	1799552	.	+	.	ID=Os09t0123200-02;Name=Os09t0123200-02;Locus_id=Os09g0123200;CGSNL Gene Symbol=FCA;CGSNL Gene Name=OSFCA PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsFCA%2C OsFCA-1%2C OsFCA-2%2C OsFCA-3%2C OsFCA-4%2C OsFCA-gamma;Oryzabase Gene Name Synonym(s)=OsFCA protein;Note=Similar to Flowering time control protein isoform OsFCA-1.;Transcript_evidence=AK058419 (DDBJ%2C Best hit);ORF_evidence=B8BCZ8 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515);InterPro=RNA recognition motif domain (IPR000504),WW/Rsp5/WWP (IPR001202),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-015-D06;Oryzabase=6144;Expression=AK058419;TENOR=Os09t0123200-02;KEGG=Os09t0123200-02
Chr09	irgsp1_rep	five_prime_UTR	1795020	1795020	.	+	.	Parent=Os09t0123200-02
Chr09	irgsp1_rep	CDS	1795021	1795072	.	+	0	Parent=Os09t0123200-02
Chr09	irgsp1_rep	CDS	1795326	1795393	.	+	2	Parent=Os09t0123200-02
Chr09	irgsp1_rep	CDS	1795567	1795633	.	+	0	Parent=Os09t0123200-02
Chr09	irgsp1_rep	CDS	1795714	1795793	.	+	2	Parent=Os09t0123200-02
Chr09	irgsp1_rep	CDS	1795864	1795928	.	+	0	Parent=Os09t0123200-02
Chr09	irgsp1_rep	CDS	1796073	1796135	.	+	1	Parent=Os09t0123200-02
Chr09	irgsp1_rep	CDS	1796559	1796715	.	+	1	Parent=Os09t0123200-02
Chr09	irgsp1_rep	CDS	1796799	1796876	.	+	0	Parent=Os09t0123200-02
Chr09	irgsp1_rep	CDS	1796965	1797492	.	+	0	Parent=Os09t0123200-02
Chr09	irgsp1_rep	CDS	1797609	1797785	.	+	0	Parent=Os09t0123200-02
Chr09	irgsp1_rep	CDS	1797867	1798076	.	+	0	Parent=Os09t0123200-02
Chr09	irgsp1_rep	CDS	1798558	1798617	.	+	0	Parent=Os09t0123200-02
Chr09	irgsp1_rep	CDS	1798713	1798751	.	+	0	Parent=Os09t0123200-02
Chr09	irgsp1_rep	three_prime_UTR	1798752	1798759	.	+	.	Parent=Os09t0123200-02
Chr09	irgsp1_rep	three_prime_UTR	1799162	1799552	.	+	.	Parent=Os09t0123200-02
Chr09	irgsp1_rep	mRNA	1790694	1797449	.	-	.	ID=Os09t0123250-00;Name=Os09t0123250-00;Locus_id=Os09g0123250;Note=Non-protein coding transcript.;Transcript_evidence=AK371248 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0123250-00
Chr09	irgsp1_rep	exon	1796974	1797449	.	-	.	Parent=Os09t0123250-00
Chr09	irgsp1_rep	exon	1796803	1796881	.	-	.	Parent=Os09t0123250-00
Chr09	irgsp1_rep	exon	1796546	1796720	.	-	.	Parent=Os09t0123250-00
Chr09	irgsp1_rep	exon	1796071	1796124	.	-	.	Parent=Os09t0123250-00
Chr09	irgsp1_rep	exon	1795863	1795926	.	-	.	Parent=Os09t0123250-00
Chr09	irgsp1_rep	exon	1795712	1795792	.	-	.	Parent=Os09t0123250-00
Chr09	irgsp1_rep	exon	1795565	1795631	.	-	.	Parent=Os09t0123250-00
Chr09	irgsp1_rep	exon	1795308	1795391	.	-	.	Parent=Os09t0123250-00
Chr09	irgsp1_rep	exon	1794845	1794968	.	-	.	Parent=Os09t0123250-00
Chr09	irgsp1_rep	exon	1792262	1792338	.	-	.	Parent=Os09t0123250-00
Chr09	irgsp1_rep	exon	1791710	1791799	.	-	.	Parent=Os09t0123250-00
Chr09	irgsp1_rep	exon	1790694	1791060	.	-	.	Parent=Os09t0123250-00
Chr09	irgsp1_rep	mRNA	1804037	1810807	.	+	.	ID=Os09t0123300-01;Name=Os09t0123300-01;Locus_id=Os09g0123300;CGSNL Gene Symbol=RLCK259;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 259;Oryzabase Gene Symbol Synonym(s)=OsRLCK259;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 259;Note=Similar to Calmodulin-binding receptor-like kinase.;Transcript_evidence=AK065517 (DDBJ%2C Best hit);ORF_evidence=C6ZRV1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J013027P20;Oryzabase=18949;Expression=AK065517;TENOR=Os09t0123300-01;KEGG=Os09t0123300-01
Chr09	irgsp1_rep	five_prime_UTR	1804037	1804491	.	+	.	Parent=Os09t0123300-01
Chr09	irgsp1_rep	CDS	1804492	1804795	.	+	0	Parent=Os09t0123300-01
Chr09	irgsp1_rep	CDS	1805079	1805327	.	+	2	Parent=Os09t0123300-01
Chr09	irgsp1_rep	CDS	1806424	1806686	.	+	2	Parent=Os09t0123300-01
Chr09	irgsp1_rep	CDS	1808480	1808645	.	+	0	Parent=Os09t0123300-01
Chr09	irgsp1_rep	CDS	1808733	1808822	.	+	2	Parent=Os09t0123300-01
Chr09	irgsp1_rep	CDS	1809664	1809962	.	+	2	Parent=Os09t0123300-01
Chr09	irgsp1_rep	CDS	1810310	1810519	.	+	0	Parent=Os09t0123300-01
Chr09	irgsp1_rep	three_prime_UTR	1810520	1810807	.	+	.	Parent=Os09t0123300-01
Chr09	irgsp1_rep	mRNA	1811284	1811712	.	-	.	ID=Os09t0123400-00;Name=Os09t0123400-00;Locus_id=Os09g0123400;Note=Hypothetical conserved gene.;Transcript_evidence=EU941192 (DDBJ);ORF_evidence=Q6K269 (UniProt);TENOR=Os09t0123400-00;KEGG=Os09t0123400-00
Chr09	irgsp1_rep	five_prime_UTR	1811704	1811712	.	-	.	Parent=Os09t0123400-00
Chr09	irgsp1_rep	CDS	1811284	1811703	.	-	0	Parent=Os09t0123400-00
Chr09	irgsp1_rep	mRNA	1814051	1822556	.	-	.	ID=Os09t0123500-01;Name=Os09t0123500-01;Locus_id=Os09g0123500;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK100990 (DDBJ%2C Best hit);ORF_evidence=B8BD00 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J023145M04;Expression=AK100990;TENOR=Os09t0123500-01;KEGG=Os09t0123500-01
Chr09	irgsp1_rep	five_prime_UTR	1822374	1822556	.	-	.	Parent=Os09t0123500-01
Chr09	irgsp1_rep	CDS	1822304	1822373	.	-	0	Parent=Os09t0123500-01
Chr09	irgsp1_rep	CDS	1822029	1822202	.	-	2	Parent=Os09t0123500-01
Chr09	irgsp1_rep	CDS	1819165	1819290	.	-	2	Parent=Os09t0123500-01
Chr09	irgsp1_rep	CDS	1818199	1818338	.	-	2	Parent=Os09t0123500-01
Chr09	irgsp1_rep	CDS	1817553	1817639	.	-	0	Parent=Os09t0123500-01
Chr09	irgsp1_rep	CDS	1817293	1817421	.	-	0	Parent=Os09t0123500-01
Chr09	irgsp1_rep	CDS	1816385	1816537	.	-	0	Parent=Os09t0123500-01
Chr09	irgsp1_rep	CDS	1815107	1815208	.	-	0	Parent=Os09t0123500-01
Chr09	irgsp1_rep	CDS	1814725	1814904	.	-	0	Parent=Os09t0123500-01
Chr09	irgsp1_rep	CDS	1814564	1814643	.	-	0	Parent=Os09t0123500-01
Chr09	irgsp1_rep	CDS	1814325	1814370	.	-	1	Parent=Os09t0123500-01
Chr09	irgsp1_rep	three_prime_UTR	1814051	1814324	.	-	.	Parent=Os09t0123500-01
Chr09	irgsp1_rep	mRNA	1814560	1822375	.	+	.	ID=Os09t0123800-00;Name=Os09t0123800-00;Locus_id=Os09g0123800;Note=Non-protein coding transcript.;Transcript_evidence=tplb0054e10 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os09t0123800-00
Chr09	irgsp1_rep	exon	1814560	1814642	.	+	.	Parent=Os09t0123800-00
Chr09	irgsp1_rep	exon	1814724	1814909	.	+	.	Parent=Os09t0123800-00
Chr09	irgsp1_rep	exon	1815112	1815207	.	+	.	Parent=Os09t0123800-00
Chr09	irgsp1_rep	exon	1816384	1816526	.	+	.	Parent=Os09t0123800-00
Chr09	irgsp1_rep	exon	1817281	1817437	.	+	.	Parent=Os09t0123800-00
Chr09	irgsp1_rep	exon	1818118	1818333	.	+	.	Parent=Os09t0123800-00
Chr09	irgsp1_rep	exon	1819159	1819281	.	+	.	Parent=Os09t0123800-00
Chr09	irgsp1_rep	exon	1822017	1822182	.	+	.	Parent=Os09t0123800-00
Chr09	irgsp1_rep	exon	1822281	1822375	.	+	.	Parent=Os09t0123800-00
Chr09	irgsp1_rep	mRNA	1851028	1857818	.	-	.	ID=Os09t0124100-00;Name=Os09t0124100-00;Locus_id=Os09g0124100;Note=Ankyrin repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6K4I4 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734),Ankyrin repeat-containing domain (IPR020683);TENOR=Os09t0124100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	1857791	1857818	.	-	0	Parent=Os09t0124100-00
Chr09	irgsp1_rep	CDS	1857229	1857354	.	-	2	Parent=Os09t0124100-00
Chr09	irgsp1_rep	CDS	1856079	1856218	.	-	2	Parent=Os09t0124100-00
Chr09	irgsp1_rep	CDS	1855092	1855220	.	-	0	Parent=Os09t0124100-00
Chr09	irgsp1_rep	CDS	1852529	1852612	.	-	0	Parent=Os09t0124100-00
Chr09	irgsp1_rep	CDS	1851533	1851712	.	-	0	Parent=Os09t0124100-00
Chr09	irgsp1_rep	CDS	1851375	1851454	.	-	0	Parent=Os09t0124100-00
Chr09	irgsp1_rep	CDS	1851028	1851076	.	-	1	Parent=Os09t0124100-00
Chr09	irgsp1_rep	mRNA	1851371	1878655	.	+	.	ID=Os09t0124166-00;Name=Os09t0124166-00;Locus_id=Os09g0124166;Note=Non-protein coding transcript.;Transcript_evidence=tplb0054e10 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os09t0124166-00
Chr09	irgsp1_rep	exon	1851371	1851451	.	+	.	Parent=Os09t0124166-00
Chr09	irgsp1_rep	exon	1851523	1851717	.	+	.	Parent=Os09t0124166-00
Chr09	irgsp1_rep	exon	1852516	1852611	.	+	.	Parent=Os09t0124166-00
Chr09	irgsp1_rep	exon	1854313	1854455	.	+	.	Parent=Os09t0124166-00
Chr09	irgsp1_rep	exon	1855080	1855264	.	+	.	Parent=Os09t0124166-00
Chr09	irgsp1_rep	exon	1855393	1855446	.	+	.	Parent=Os09t0124166-00
Chr09	irgsp1_rep	exon	1856084	1856213	.	+	.	Parent=Os09t0124166-00
Chr09	irgsp1_rep	exon	1857225	1857345	.	+	.	Parent=Os09t0124166-00
Chr09	irgsp1_rep	exon	1859070	1859265	.	+	.	Parent=Os09t0124166-00
Chr09	irgsp1_rep	exon	1878589	1878655	.	+	.	Parent=Os09t0124166-00
Chr09	irgsp1_rep	mRNA	1861984	1864201	.	+	.	ID=Os09t0124200-01;Name=Os09t0124200-01;Locus_id=Os09g0124200;Note=Homeodomain-like containing protein.;Transcript_evidence=AK107882 (DDBJ%2C Best hit);ORF_evidence=Q25AD5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),SANT%2C eukarya (IPR017884);NIAS_FLcDNA=002-134-D08;Expression=AK107882;TENOR=Os09t0124200-01;KEGG=Os09t0124200-01
Chr09	irgsp1_rep	five_prime_UTR	1861984	1862469	.	+	.	Parent=Os09t0124200-01
Chr09	irgsp1_rep	five_prime_UTR	1863458	1863511	.	+	.	Parent=Os09t0124200-01
Chr09	irgsp1_rep	five_prime_UTR	1863621	1863810	.	+	.	Parent=Os09t0124200-01
Chr09	irgsp1_rep	CDS	1863811	1863817	.	+	0	Parent=Os09t0124200-01
Chr09	irgsp1_rep	CDS	1863972	1864180	.	+	2	Parent=Os09t0124200-01
Chr09	irgsp1_rep	three_prime_UTR	1864181	1864201	.	+	.	Parent=Os09t0124200-01
Chr09	irgsp1_rep	mRNA	1859006	1859251	.	-	.	ID=Os09t0124232-00;Name=Os09t0124232-00;Locus_id=Os09g0124232;Note=Ankyrin repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3BW61 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);TENOR=Os09t0124232-00
Chr09	irgsp1_rep	CDS	1859006	1859251	.	-	0	Parent=Os09t0124232-00
Chr09	irgsp1_rep	mRNA	1859579	1878357	.	-	.	ID=Os09t0124300-00;Name=Os09t0124300-00;Locus_id=Os09g0124300;Note=Hypothetical conserved gene.;Transcript_evidence=CT835831 (DDBJ%2C Best hit);ORF_evidence=Q6K4I2 (UniProt);TENOR=Os09t0124300-00;KEGG=Os09t0124300-00
Chr09	irgsp1_rep	five_prime_UTR	1878356	1878357	.	-	.	Parent=Os09t0124300-00
Chr09	irgsp1_rep	CDS	1878051	1878355	.	-	0	Parent=Os09t0124300-00
Chr09	irgsp1_rep	CDS	1877871	1877971	.	-	1	Parent=Os09t0124300-00
Chr09	irgsp1_rep	CDS	1861506	1861539	.	-	2	Parent=Os09t0124300-00
Chr09	irgsp1_rep	CDS	1859778	1859862	.	-	1	Parent=Os09t0124300-00
Chr09	irgsp1_rep	three_prime_UTR	1859579	1859777	.	-	.	Parent=Os09t0124300-00
Chr09	irgsp1_rep	mRNA	1889890	1890429	.	-	.	ID=Os09t0124566-00;Name=Os09t0124566-00;Locus_id=Os09g0124566;Note=Hypothetical gene.;Transcript_evidence=CT835899 (DDBJ%2C Best hit);ORF_evidence=NP_001176066.1 (RefSeq);TENOR=Os09t0124566-00
Chr09	irgsp1_rep	five_prime_UTR	1890374	1890429	.	-	.	Parent=Os09t0124566-00
Chr09	irgsp1_rep	CDS	1890047	1890373	.	-	0	Parent=Os09t0124566-00
Chr09	irgsp1_rep	CDS	1889890	1889963	.	-	0	Parent=Os09t0124566-00
Chr09	irgsp1_rep	mRNA	1892170	1901087	.	+	.	ID=Os09t0124800-01;Name=Os09t0124800-01;Locus_id=Os09g0124800;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK068333 (DDBJ%2C Best hit);ORF_evidence=B8BD02 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J013136G09;Expression=AK068333;TENOR=Os09t0124800-01;KEGG=Os09t0124800-01
Chr09	irgsp1_rep	five_prime_UTR	1892170	1892210	.	+	.	Parent=Os09t0124800-01
Chr09	irgsp1_rep	CDS	1892211	1892295	.	+	0	Parent=Os09t0124800-01
Chr09	irgsp1_rep	CDS	1892383	1892565	.	+	2	Parent=Os09t0124800-01
Chr09	irgsp1_rep	CDS	1893603	1893731	.	+	2	Parent=Os09t0124800-01
Chr09	irgsp1_rep	CDS	1894982	1895121	.	+	2	Parent=Os09t0124800-01
Chr09	irgsp1_rep	CDS	1895359	1895445	.	+	0	Parent=Os09t0124800-01
Chr09	irgsp1_rep	CDS	1895579	1895707	.	+	0	Parent=Os09t0124800-01
Chr09	irgsp1_rep	CDS	1898599	1898751	.	+	0	Parent=Os09t0124800-01
Chr09	irgsp1_rep	CDS	1899091	1899192	.	+	0	Parent=Os09t0124800-01
Chr09	irgsp1_rep	CDS	1900085	1900264	.	+	0	Parent=Os09t0124800-01
Chr09	irgsp1_rep	CDS	1900358	1900437	.	+	0	Parent=Os09t0124800-01
Chr09	irgsp1_rep	CDS	1900701	1900752	.	+	1	Parent=Os09t0124800-01
Chr09	irgsp1_rep	three_prime_UTR	1900753	1901087	.	+	.	Parent=Os09t0124800-01
Chr09	irgsp1_rep	mRNA	1892203	1900438	.	-	.	ID=Os09t0124816-00;Name=Os09t0124816-00;Locus_id=Os09g0124816;Note=Hypothetical protein.;Transcript_evidence=tplb0054e10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0124816-00
Chr09	irgsp1_rep	five_prime_UTR	1900356	1900438	.	-	.	Parent=Os09t0124816-00
Chr09	irgsp1_rep	five_prime_UTR	1900071	1900263	.	-	.	Parent=Os09t0124816-00
Chr09	irgsp1_rep	five_prime_UTR	1899074	1899180	.	-	.	Parent=Os09t0124816-00
Chr09	irgsp1_rep	five_prime_UTR	1898579	1898732	.	-	.	Parent=Os09t0124816-00
Chr09	irgsp1_rep	five_prime_UTR	1895516	1895690	.	-	.	Parent=Os09t0124816-00
Chr09	irgsp1_rep	five_prime_UTR	1894987	1895152	.	-	.	Parent=Os09t0124816-00
Chr09	irgsp1_rep	five_prime_UTR	1893648	1893735	.	-	.	Parent=Os09t0124816-00
Chr09	irgsp1_rep	CDS	1893610	1893647	.	-	0	Parent=Os09t0124816-00
Chr09	irgsp1_rep	CDS	1892408	1892573	.	-	1	Parent=Os09t0124816-00
Chr09	irgsp1_rep	CDS	1892290	1892313	.	-	0	Parent=Os09t0124816-00
Chr09	irgsp1_rep	three_prime_UTR	1892203	1892289	.	-	.	Parent=Os09t0124816-00
Chr09	irgsp1_rep	mRNA	1911520	1913421	.	-	.	ID=Os09t0124850-00;Name=Os09t0124850-00;Locus_id=Os09g0124850;Note=Conserved hypothetical protein.;Transcript_evidence=AK289094 (DDBJ%2C Secondary hit);ORF_evidence=NP_001068491.1 (RefSeq);TENOR=Os09t0124850-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	1913421	1913421	.	-	.	Parent=Os09t0124850-00
Chr09	irgsp1_rep	CDS	1912896	1913420	.	-	0	Parent=Os09t0124850-00
Chr09	irgsp1_rep	three_prime_UTR	1912827	1912895	.	-	.	Parent=Os09t0124850-00
Chr09	irgsp1_rep	three_prime_UTR	1912212	1912623	.	-	.	Parent=Os09t0124850-00
Chr09	irgsp1_rep	three_prime_UTR	1911520	1912169	.	-	.	Parent=Os09t0124850-00
Chr09	irgsp1_rep	mRNA	1932253	1932886	.	-	.	ID=Os09t0125400-00;Name=Os09t0125400-00;Locus_id=Os09g0125400;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6K385 (UniProt);TENOR=Os09t0125400-00;KEGG=Os09t0125400-00
Chr09	irgsp1_rep	CDS	1932776	1932886	.	-	0	Parent=Os09t0125400-00
Chr09	irgsp1_rep	CDS	1932461	1932559	.	-	0	Parent=Os09t0125400-00
Chr09	irgsp1_rep	CDS	1932253	1932372	.	-	0	Parent=Os09t0125400-00
Chr09	irgsp1_rep	mRNA	1935772	1935880	.	+	.	ID=Os09t0125450-00;Name=Os09t0125450-00;Locus_id=Os09g0125450;Note=Non-protein coding transcript.;Transcript_evidence=EU944270 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0125450-00
Chr09	irgsp1_rep	exon	1935772	1935880	.	+	.	Parent=Os09t0125450-00
Chr09	irgsp1_rep	mRNA	1985632	1990885	.	-	.	ID=Os09t0125766-01;Name=Os09t0125766-01;Locus_id=Os09g0125766;Note=Hypothetical gene.;Transcript_evidence=AK242795 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090058B19;TENOR=Os09t0125766-01;KEGG=Os09t0125766-01
Chr09	irgsp1_rep	five_prime_UTR	1990552	1990885	.	-	.	Parent=Os09t0125766-01
Chr09	irgsp1_rep	five_prime_UTR	1989387	1989620	.	-	.	Parent=Os09t0125766-01
Chr09	irgsp1_rep	five_prime_UTR	1986650	1988469	.	-	.	Parent=Os09t0125766-01
Chr09	irgsp1_rep	CDS	1986338	1986649	.	-	0	Parent=Os09t0125766-01
Chr09	irgsp1_rep	three_prime_UTR	1985632	1986337	.	-	.	Parent=Os09t0125766-01
Chr09	irgsp1_rep	mRNA	2007493	2021289	.	-	.	ID=Os09t0125900-01;Name=Os09t0125900-01;Locus_id=Os09g0125900;CGSNL Gene Symbol=ABCG19;CGSNL Gene Name=ABC TRANSPORTER G FAMILY MEMBER 19;Oryzabase Gene Symbol Synonym(s)=OsABCG19%2C OsABCG19_1%2C OsABCG19_2;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 19;Note=Similar to PDR15 ABC transporter.;Transcript_evidence=AK065634 (DDBJ%2C Best hit);ORF_evidence=Q10A32 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ABC-2 type transporter (IPR013525);NIAS_FLcDNA=J013034I10;Oryzabase=11996;Expression=AK065634;TENOR=Os09t0125900-01;KEGG=Os09t0125900-01
Chr09	irgsp1_rep	five_prime_UTR	2021190	2021289	.	-	.	Parent=Os09t0125900-01
Chr09	irgsp1_rep	CDS	2020757	2021189	.	-	0	Parent=Os09t0125900-01
Chr09	irgsp1_rep	CDS	2013132	2013211	.	-	2	Parent=Os09t0125900-01
Chr09	irgsp1_rep	CDS	2010060	2010188	.	-	0	Parent=Os09t0125900-01
Chr09	irgsp1_rep	CDS	2009763	2009951	.	-	0	Parent=Os09t0125900-01
Chr09	irgsp1_rep	CDS	2009573	2009659	.	-	0	Parent=Os09t0125900-01
Chr09	irgsp1_rep	CDS	2007758	2008417	.	-	0	Parent=Os09t0125900-01
Chr09	irgsp1_rep	three_prime_UTR	2007493	2007757	.	-	.	Parent=Os09t0125900-01
Chr09	irgsp1_rep	mRNA	2007852	2021005	.	+	.	ID=Os09t0126250-00;Name=Os09t0126250-00;Locus_id=Os09g0126250;Note=Protein of unknown function DUF1602 domain containing protein.;Transcript_evidence=tplb0024i20 (Wheat FLcDNA);ORF_evidence=longestORF;InterPro=Protein of unknown function DUF1602 (IPR011633);TENOR=Os09t0126250-00
Chr09	irgsp1_rep	five_prime_UTR	2007852	2008407	.	+	.	Parent=Os09t0126250-00
Chr09	irgsp1_rep	five_prime_UTR	2009563	2009627	.	+	.	Parent=Os09t0126250-00
Chr09	irgsp1_rep	five_prime_UTR	2009723	2009940	.	+	.	Parent=Os09t0126250-00
Chr09	irgsp1_rep	five_prime_UTR	2010053	2010192	.	+	.	Parent=Os09t0126250-00
Chr09	irgsp1_rep	five_prime_UTR	2010650	2010739	.	+	.	Parent=Os09t0126250-00
Chr09	irgsp1_rep	five_prime_UTR	2010834	2010890	.	+	.	Parent=Os09t0126250-00
Chr09	irgsp1_rep	CDS	2010891	2011265	.	+	0	Parent=Os09t0126250-00
Chr09	irgsp1_rep	three_prime_UTR	2011266	2011318	.	+	.	Parent=Os09t0126250-00
Chr09	irgsp1_rep	three_prime_UTR	2020666	2021005	.	+	.	Parent=Os09t0126250-00
Chr09	irgsp1_rep	mRNA	2048654	2049739	.	+	.	ID=Os09t0126600-01;Name=Os09t0126600-01;Locus_id=Os09g0126600;Note=Conserved hypothetical protein.;Transcript_evidence=AK064651 (DDBJ%2C Best hit);ORF_evidence=A2YYM0 (UniProt);NIAS_FLcDNA=002-114-E09;Expression=AK064651;TENOR=Os09t0126600-01;KEGG=Os09t0126600-01
Chr09	irgsp1_rep	five_prime_UTR	2048654	2048725	.	+	.	Parent=Os09t0126600-01
Chr09	irgsp1_rep	CDS	2048726	2049466	.	+	0	Parent=Os09t0126600-01
Chr09	irgsp1_rep	three_prime_UTR	2049467	2049739	.	+	.	Parent=Os09t0126600-01
Chr09	irgsp1_rep	mRNA	2083449	2086572	.	-	.	ID=Os09t0127300-01;Name=Os09t0127300-01;Locus_id=Os09g0127300;CGSNL Gene Symbol=CCR17;CGSNL Gene Name=CINNAMOYL-COA REDUCTASE 17;Oryzabase Gene Symbol Synonym(s)=OsCCR17;Oryzabase Gene Name Synonym(s)=Cinnamoyl-CoA reductase 17;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK100234 (DDBJ%2C Best hit);ORF_evidence=Q84JD0 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023051O20;Oryzabase=22247;Expression=AK100234;TENOR=Os09t0127300-01;KEGG=Os09t0127300-01
Chr09	irgsp1_rep	five_prime_UTR	2086368	2086572	.	-	.	Parent=Os09t0127300-01
Chr09	irgsp1_rep	CDS	2086205	2086367	.	-	0	Parent=Os09t0127300-01
Chr09	irgsp1_rep	CDS	2085930	2086084	.	-	2	Parent=Os09t0127300-01
Chr09	irgsp1_rep	CDS	2085637	2085822	.	-	0	Parent=Os09t0127300-01
Chr09	irgsp1_rep	CDS	2083811	2084350	.	-	0	Parent=Os09t0127300-01
Chr09	irgsp1_rep	three_prime_UTR	2083449	2083810	.	-	.	Parent=Os09t0127300-01
Chr09	irgsp1_rep	mRNA	2123405	2124075	.	-	.	ID=Os09t0127700-01;Name=Os09t0127700-01;Locus_id=Os09g0127700;Note=Conserved hypothetical protein.;Transcript_evidence=AK107885 (DDBJ%2C Best hit);ORF_evidence=A2YYM6 (UniProt);NIAS_FLcDNA=002-134-D11;Expression=AK107885;TENOR=Os09t0127700-01;KEGG=Os09t0127700-01
Chr09	irgsp1_rep	five_prime_UTR	2124011	2124075	.	-	.	Parent=Os09t0127700-01
Chr09	irgsp1_rep	CDS	2123645	2124010	.	-	0	Parent=Os09t0127700-01
Chr09	irgsp1_rep	three_prime_UTR	2123405	2123644	.	-	.	Parent=Os09t0127700-01
Chr09	irgsp1_rep	mRNA	2126392	2132704	.	-	.	ID=Os09t0127800-01;Name=Os09t0127800-01;Locus_id=Os09g0127800;Oryzabase Gene Symbol Synonym(s)=OsWD40-165;Note=Similar to Coatomer alpha subunit.;Transcript_evidence=AK103786 (DDBJ%2C Best hit);ORF_evidence=B7EQ85 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: membrane coat (GO:0030117),Cellular Component: COPI vesicle coat (GO:0030126),Molecular Function: structural molecule activity (GO:0005198),Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),Coatomer%2C WD associated region (IPR006692),Coatomer%2C alpha subunit%2C C-terminal (IPR010714),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),Coatomer%2C alpha subunit (IPR016391),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J033145I16;Oryzabase=10846;Expression=AK103786;TENOR=Os09t0127800-01;KEGG=Os09t0127800-01
Chr09	irgsp1_rep	five_prime_UTR	2132479	2132704	.	-	.	Parent=Os09t0127800-01
Chr09	irgsp1_rep	CDS	2132271	2132478	.	-	0	Parent=Os09t0127800-01
Chr09	irgsp1_rep	CDS	2130837	2131331	.	-	2	Parent=Os09t0127800-01
Chr09	irgsp1_rep	CDS	2127481	2130434	.	-	2	Parent=Os09t0127800-01
Chr09	irgsp1_rep	three_prime_UTR	2127471	2127480	.	-	.	Parent=Os09t0127800-01
Chr09	irgsp1_rep	three_prime_UTR	2126392	2126780	.	-	.	Parent=Os09t0127800-01
Chr09	irgsp1_rep	mRNA	2126326	2130060	.	-	.	ID=Os09t0127800-02;Name=Os09t0127800-02;Locus_id=Os09g0127800;Oryzabase Gene Symbol Synonym(s)=OsWD40-165;Note=Similar to cDNA clone:J023075G08%2C full insert sequence.;Transcript_evidence=AK105672 (DDBJ%2C Best hit);ORF_evidence=B7EQ85 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: membrane coat (GO:0030117),Cellular Component: COPI vesicle coat (GO:0030126),Molecular Function: structural molecule activity (GO:0005198),Molecular Function: protein binding (GO:0005515);InterPro=Coatomer%2C WD associated region (IPR006692),Coatomer%2C alpha subunit%2C C-terminal (IPR010714);NIAS_FLcDNA=001-201-A08;Oryzabase=10846;Expression=AK105672;TENOR=Os09t0127800-02;KEGG=Os09t0127800-02
Chr09	irgsp1_rep	CDS	2127481	2130060	.	-	0	Parent=Os09t0127800-02
Chr09	irgsp1_rep	three_prime_UTR	2127471	2127480	.	-	.	Parent=Os09t0127800-02
Chr09	irgsp1_rep	three_prime_UTR	2126326	2126780	.	-	.	Parent=Os09t0127800-02
Chr09	irgsp1_rep	mRNA	2127260	2129146	.	-	.	ID=Os09t0127800-03;Name=Os09t0127800-03;Locus_id=Os09g0127800;Oryzabase Gene Symbol Synonym(s)=OsWD40-165;Note=Similar to cDNA clone:J023075G08%2C full insert sequence.;Transcript_evidence=AK058402 (DDBJ%2C Best hit);ORF_evidence=B7EQ85 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: membrane coat (GO:0030117),Cellular Component: COPI vesicle coat (GO:0030126),Molecular Function: structural molecule activity (GO:0005198),Molecular Function: protein binding (GO:0005515);InterPro=Coatomer%2C WD associated region (IPR006692),Coatomer%2C alpha subunit%2C C-terminal (IPR010714);NIAS_FLcDNA=001-015-B07;Oryzabase=10846;Expression=AK058402;TENOR=Os09t0127800-03;KEGG=Os09t0127800-03
Chr09	irgsp1_rep	five_prime_UTR	2129146	2129146	.	-	.	Parent=Os09t0127800-03
Chr09	irgsp1_rep	CDS	2127986	2129145	.	-	0	Parent=Os09t0127800-03
Chr09	irgsp1_rep	CDS	2127481	2127832	.	-	1	Parent=Os09t0127800-03
Chr09	irgsp1_rep	three_prime_UTR	2127260	2127480	.	-	.	Parent=Os09t0127800-03
Chr09	irgsp1_rep	mRNA	2128276	2132400	.	+	.	ID=Os09t0128101-00;Name=Os09t0128101-00;Locus_id=Os09g0128101;Note=Hypothetical protein.;Transcript_evidence=tplb0039i16 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0128101-00
Chr09	irgsp1_rep	five_prime_UTR	2128276	2128405	.	+	.	Parent=Os09t0128101-00
Chr09	irgsp1_rep	CDS	2128406	2128858	.	+	0	Parent=Os09t0128101-00
Chr09	irgsp1_rep	three_prime_UTR	2128859	2130430	.	+	.	Parent=Os09t0128101-00
Chr09	irgsp1_rep	three_prime_UTR	2130831	2131320	.	+	.	Parent=Os09t0128101-00
Chr09	irgsp1_rep	three_prime_UTR	2132252	2132400	.	+	.	Parent=Os09t0128101-00
Chr09	irgsp1_rep	mRNA	2181578	2187453	.	-	.	ID=Os09t0128400-01;Name=Os09t0128400-01;Locus_id=Os09g0128400;Note=Conserved hypothetical protein.;Transcript_evidence=AK103118 (DDBJ%2C Best hit);ORF_evidence=B9G271 (UniProt);NIAS_FLcDNA=J033119H02;Expression=AK103118;TENOR=Os09t0128400-01;KEGG=Os09t0128400-01
Chr09	irgsp1_rep	five_prime_UTR	2187319	2187453	.	-	.	Parent=Os09t0128400-01
Chr09	irgsp1_rep	CDS	2187193	2187318	.	-	0	Parent=Os09t0128400-01
Chr09	irgsp1_rep	CDS	2185316	2185558	.	-	0	Parent=Os09t0128400-01
Chr09	irgsp1_rep	CDS	2183763	2183936	.	-	0	Parent=Os09t0128400-01
Chr09	irgsp1_rep	CDS	2183436	2183542	.	-	0	Parent=Os09t0128400-01
Chr09	irgsp1_rep	CDS	2183133	2183148	.	-	1	Parent=Os09t0128400-01
Chr09	irgsp1_rep	three_prime_UTR	2182842	2183132	.	-	.	Parent=Os09t0128400-01
Chr09	irgsp1_rep	three_prime_UTR	2181578	2182518	.	-	.	Parent=Os09t0128400-01
Chr09	irgsp1_rep	mRNA	2181697	2187405	.	-	.	ID=Os09t0128400-02;Name=Os09t0128400-02;Locus_id=Os09g0128400;Note=Conserved hypothetical protein.;Transcript_evidence=AK059696 (DDBJ%2C Best hit);ORF_evidence=B9G271 (UniProt);NIAS_FLcDNA=001-032-C03;TENOR=Os09t0128400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	2187282	2187405	.	-	.	Parent=Os09t0128400-02
Chr09	irgsp1_rep	CDS	2187260	2187281	.	-	0	Parent=Os09t0128400-02
Chr09	irgsp1_rep	CDS	2185316	2185551	.	-	2	Parent=Os09t0128400-02
Chr09	irgsp1_rep	CDS	2183763	2183936	.	-	0	Parent=Os09t0128400-02
Chr09	irgsp1_rep	CDS	2183432	2183542	.	-	0	Parent=Os09t0128400-02
Chr09	irgsp1_rep	three_prime_UTR	2182842	2183431	.	-	.	Parent=Os09t0128400-02
Chr09	irgsp1_rep	three_prime_UTR	2181697	2182518	.	-	.	Parent=Os09t0128400-02
Chr09	irgsp1_rep	mRNA	2212262	2222891	.	-	.	ID=Os09t0128600-01;Name=Os09t0128600-01;Locus_id=Os09g0128600;Note=CMP/dCMP deaminase%2C zinc-binding domain containing protein.;Transcript_evidence=AK066410 (DDBJ%2C Best hit);ORF_evidence=NP_001147072.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: hydrolase activity (GO:0016787);InterPro=CMP/dCMP deaminase%2C zinc-binding (IPR002125),Cytidine deaminase-like (IPR016193);NIAS_FLcDNA=J013067M21;Expression=AK066410;TENOR=Os09t0128600-01;KEGG=Os09t0128600-01
Chr09	irgsp1_rep	five_prime_UTR	2222765	2222891	.	-	.	Parent=Os09t0128600-01
Chr09	irgsp1_rep	five_prime_UTR	2220254	2220301	.	-	.	Parent=Os09t0128600-01
Chr09	irgsp1_rep	five_prime_UTR	2220150	2220171	.	-	.	Parent=Os09t0128600-01
Chr09	irgsp1_rep	CDS	2220089	2220149	.	-	0	Parent=Os09t0128600-01
Chr09	irgsp1_rep	CDS	2219958	2220009	.	-	2	Parent=Os09t0128600-01
Chr09	irgsp1_rep	CDS	2219086	2219159	.	-	1	Parent=Os09t0128600-01
Chr09	irgsp1_rep	CDS	2218223	2218344	.	-	2	Parent=Os09t0128600-01
Chr09	irgsp1_rep	CDS	2217510	2217592	.	-	0	Parent=Os09t0128600-01
Chr09	irgsp1_rep	CDS	2216043	2216124	.	-	1	Parent=Os09t0128600-01
Chr09	irgsp1_rep	CDS	2212882	2213343	.	-	0	Parent=Os09t0128600-01
Chr09	irgsp1_rep	CDS	2212681	2212787	.	-	0	Parent=Os09t0128600-01
Chr09	irgsp1_rep	CDS	2212411	2212603	.	-	1	Parent=Os09t0128600-01
Chr09	irgsp1_rep	three_prime_UTR	2212262	2212410	.	-	.	Parent=Os09t0128600-01
Chr09	irgsp1_rep	mRNA	2218192	2222563	.	-	.	ID=Os09t0128600-02;Name=Os09t0128600-02;Locus_id=Os09g0128600;Note=Similar to hydrolase/ zinc ion binding protein.;Transcript_evidence=AK066801 (DDBJ%2C Best hit);ORF_evidence=NP_001147072.1 (RefSeq);NIAS_FLcDNA=J013077N21;TENOR=Os09t0128600-02
Chr09	irgsp1_rep	five_prime_UTR	2220254	2222563	.	-	.	Parent=Os09t0128600-02
Chr09	irgsp1_rep	five_prime_UTR	2220150	2220171	.	-	.	Parent=Os09t0128600-02
Chr09	irgsp1_rep	CDS	2220089	2220149	.	-	0	Parent=Os09t0128600-02
Chr09	irgsp1_rep	CDS	2219958	2220009	.	-	2	Parent=Os09t0128600-02
Chr09	irgsp1_rep	CDS	2219086	2219159	.	-	1	Parent=Os09t0128600-02
Chr09	irgsp1_rep	CDS	2218192	2218344	.	-	2	Parent=Os09t0128600-02
Chr09	irgsp1_rep	mRNA	2220741	2222125	.	-	.	ID=Os09t0128600-03;Name=Os09t0128600-03;Locus_id=Os09g0128600;Note=Non-protein coding transcript.;Transcript_evidence=AK064174 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-104-A08;TENOR=Os09t0128600-03
Chr09	irgsp1_rep	exon	2220741	2222125	.	-	.	Parent=Os09t0128600-03
Chr09	irgsp1_rep	mRNA	2212289	2221512	.	-	.	ID=Os09t0128600-04;Name=Os09t0128600-04;Locus_id=Os09g0128600;Note=Similar to hydrolase/ zinc ion binding protein.;Transcript_evidence=AK067963 (DDBJ%2C Best hit);ORF_evidence=NP_001147072.1 (RefSeq);NIAS_FLcDNA=J013124A01;Expression=AK067963;TENOR=Os09t0128600-04;KEGG=Os09t0128600-04
Chr09	irgsp1_rep	five_prime_UTR	2220150	2221512	.	-	.	Parent=Os09t0128600-04
Chr09	irgsp1_rep	CDS	2220089	2220149	.	-	0	Parent=Os09t0128600-04
Chr09	irgsp1_rep	CDS	2219958	2220009	.	-	2	Parent=Os09t0128600-04
Chr09	irgsp1_rep	CDS	2219086	2219159	.	-	1	Parent=Os09t0128600-04
Chr09	irgsp1_rep	CDS	2218184	2218344	.	-	2	Parent=Os09t0128600-04
Chr09	irgsp1_rep	three_prime_UTR	2217510	2218183	.	-	.	Parent=Os09t0128600-04
Chr09	irgsp1_rep	three_prime_UTR	2216043	2216124	.	-	.	Parent=Os09t0128600-04
Chr09	irgsp1_rep	three_prime_UTR	2212882	2213343	.	-	.	Parent=Os09t0128600-04
Chr09	irgsp1_rep	three_prime_UTR	2212681	2212787	.	-	.	Parent=Os09t0128600-04
Chr09	irgsp1_rep	three_prime_UTR	2212289	2212603	.	-	.	Parent=Os09t0128600-04
Chr09	irgsp1_rep	mRNA	2212165	2217592	.	-	.	ID=Os09t0128600-05;Name=Os09t0128600-05;Locus_id=Os09g0128600;Note=Similar to hydrolase/ zinc ion binding protein.;Transcript_evidence=AK061636 (DDBJ%2C Best hit);ORF_evidence=NP_001147072.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: hydrolase activity (GO:0016787);InterPro=CMP/dCMP deaminase%2C zinc-binding (IPR002125),Cytidine deaminase-like (IPR016193);NIAS_FLcDNA=001-036-A10;Expression=AK061636;TENOR=Os09t0128600-05;KEGG=Os09t0128600-05
Chr09	irgsp1_rep	CDS	2217510	2217592	.	-	0	Parent=Os09t0128600-05
Chr09	irgsp1_rep	CDS	2216043	2216124	.	-	1	Parent=Os09t0128600-05
Chr09	irgsp1_rep	CDS	2212882	2213343	.	-	0	Parent=Os09t0128600-05
Chr09	irgsp1_rep	CDS	2212681	2212787	.	-	0	Parent=Os09t0128600-05
Chr09	irgsp1_rep	CDS	2212411	2212603	.	-	1	Parent=Os09t0128600-05
Chr09	irgsp1_rep	three_prime_UTR	2212165	2212410	.	-	.	Parent=Os09t0128600-05
Chr09	irgsp1_rep	mRNA	2231659	2232764	.	-	.	ID=Os09t0128750-01;Name=Os09t0128750-01;Locus_id=Os09g0128750;Note=Hypothetical gene.;Transcript_evidence=AK287867 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065202C16;TENOR=Os09t0128750-01;KEGG=Os09t0128750-01
Chr09	irgsp1_rep	five_prime_UTR	2232657	2232764	.	-	.	Parent=Os09t0128750-01
Chr09	irgsp1_rep	five_prime_UTR	2232278	2232382	.	-	.	Parent=Os09t0128750-01
Chr09	irgsp1_rep	five_prime_UTR	2232167	2232196	.	-	.	Parent=Os09t0128750-01
Chr09	irgsp1_rep	CDS	2232120	2232166	.	-	0	Parent=Os09t0128750-01
Chr09	irgsp1_rep	CDS	2231845	2232046	.	-	1	Parent=Os09t0128750-01
Chr09	irgsp1_rep	three_prime_UTR	2231659	2231844	.	-	.	Parent=Os09t0128750-01
Chr09	irgsp1_rep	mRNA	2283169	2283388	.	+	.	ID=Os09t0129301-00;Name=Os09t0129301-00;Locus_id=Os09g0129301;Note=Non-protein coding transcript.;Transcript_evidence=AK058758 (DDBJ%2C Secondary hit);ORF_evidence=NONE;TENOR=Os09t0129301-00
Chr09	irgsp1_rep	exon	2283169	2283388	.	+	.	Parent=Os09t0129301-00
Chr09	irgsp1_rep	mRNA	2288101	2289215	.	+	.	ID=Os09t0129400-01;Name=Os09t0129400-01;Locus_id=Os09g0129400;Oryzabase Gene Symbol Synonym(s)=OsSTA219;Note=Conserved hypothetical protein.;Transcript_evidence=AK109483 (DDBJ%2C Best hit);ORF_evidence=NP_001176493.1 (RefSeq);NIAS_FLcDNA=001-202-F11;Oryzabase=19491;TENOR=Os09t0129400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	2288101	2288200	.	+	.	Parent=Os09t0129400-01
Chr09	irgsp1_rep	CDS	2288201	2288719	.	+	0	Parent=Os09t0129400-01
Chr09	irgsp1_rep	three_prime_UTR	2288720	2289215	.	+	.	Parent=Os09t0129400-01
Chr09	irgsp1_rep	mRNA	2288236	2290813	.	+	.	ID=Os09t0129400-02;Name=Os09t0129400-02;Locus_id=Os09g0129400;Oryzabase Gene Symbol Synonym(s)=OsSTA219;Note=Conserved hypothetical protein.;Transcript_evidence=AK069183 (DDBJ%2C Best hit);ORF_evidence=B9G274 (UniProt);NIAS_FLcDNA=J023008A16;Oryzabase=19491;TENOR=Os09t0129400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	2288236	2289312	.	+	.	Parent=Os09t0129400-02
Chr09	irgsp1_rep	CDS	2289313	2289405	.	+	0	Parent=Os09t0129400-02
Chr09	irgsp1_rep	CDS	2290225	2290266	.	+	0	Parent=Os09t0129400-02
Chr09	irgsp1_rep	CDS	2290459	2290542	.	+	0	Parent=Os09t0129400-02
Chr09	irgsp1_rep	three_prime_UTR	2290543	2290813	.	+	.	Parent=Os09t0129400-02
Chr09	irgsp1_rep	mRNA	2291969	2292199	.	+	.	ID=Os09t0129450-00;Name=Os09t0129450-00;Locus_id=Os09g0129450;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6K5H2 (UniProt);TENOR=Os09t0129450-00
Chr09	irgsp1_rep	CDS	2291969	2292199	.	+	0	Parent=Os09t0129450-00
Chr09	irgsp1_rep	mRNA	2293435	2294644	.	+	.	ID=Os09t0129500-01;Name=Os09t0129500-01;Locus_id=Os09g0129500;Note=Conserved hypothetical protein.;Transcript_evidence=AK099466 (DDBJ%2C Best hit);ORF_evidence=Q6ERB3 (UniProt);NIAS_FLcDNA=J013023L05;TENOR=Os09t0129500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	2293435	2293470	.	+	.	Parent=Os09t0129500-01
Chr09	irgsp1_rep	CDS	2293471	2293681	.	+	0	Parent=Os09t0129500-01
Chr09	irgsp1_rep	CDS	2293840	2293948	.	+	2	Parent=Os09t0129500-01
Chr09	irgsp1_rep	CDS	2294089	2294146	.	+	1	Parent=Os09t0129500-01
Chr09	irgsp1_rep	three_prime_UTR	2294147	2294644	.	+	.	Parent=Os09t0129500-01
Chr09	irgsp1_rep	mRNA	2297916	2298519	.	-	.	ID=Os09t0129600-01;Name=Os09t0129600-01;Locus_id=Os09g0129600;Note=Conserved hypothetical protein.;Transcript_evidence=AK241854 (DDBJ%2C Best hit);ORF_evidence=A3BW85 (UniProt);NIAS_FLcDNA=J065215K24;TENOR=Os09t0129600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	2298519	2298519	.	-	.	Parent=Os09t0129600-01
Chr09	irgsp1_rep	CDS	2298045	2298518	.	-	0	Parent=Os09t0129600-01
Chr09	irgsp1_rep	three_prime_UTR	2297916	2298044	.	-	.	Parent=Os09t0129600-01
Chr09	irgsp1_rep	mRNA	2306101	2306565	.	-	.	ID=Os09t0129800-00;Name=Os09t0129800-00;Locus_id=Os09g0129800;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6ERA9 (UniProt);TENOR=Os09t0129800-00
Chr09	irgsp1_rep	CDS	2306101	2306565	.	-	0	Parent=Os09t0129800-00
Chr09	irgsp1_rep	mRNA	2320603	2322832	.	+	.	ID=Os09t0130300-01;Name=Os09t0130300-01;Locus_id=Os09g0130300;Note=Hypothetical protein.;Transcript_evidence=AK066394 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013061E17;TENOR=Os09t0130300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	2320603	2320604	.	+	.	Parent=Os09t0130300-01
Chr09	irgsp1_rep	CDS	2320605	2320757	.	+	0	Parent=Os09t0130300-01
Chr09	irgsp1_rep	CDS	2320911	2321014	.	+	0	Parent=Os09t0130300-01
Chr09	irgsp1_rep	CDS	2321984	2322032	.	+	1	Parent=Os09t0130300-01
Chr09	irgsp1_rep	three_prime_UTR	2322033	2322832	.	+	.	Parent=Os09t0130300-01
Chr09	irgsp1_rep	mRNA	2335658	2350233	.	+	.	ID=Os09t0130500-01;Name=Os09t0130500-01;Locus_id=Os09g0130500;Note=Hypothetical conserved gene.;Transcript_evidence=AK243496 (DDBJ%2C Best hit);ORF_evidence=B9FEB4 (UniProt);NIAS_FLcDNA=J100074D08;TENOR=Os09t0130500-01
Chr09	irgsp1_rep	five_prime_UTR	2335658	2335813	.	+	.	Parent=Os09t0130500-01
Chr09	irgsp1_rep	five_prime_UTR	2335973	2336060	.	+	.	Parent=Os09t0130500-01
Chr09	irgsp1_rep	CDS	2336061	2336076	.	+	0	Parent=Os09t0130500-01
Chr09	irgsp1_rep	CDS	2348591	2348682	.	+	2	Parent=Os09t0130500-01
Chr09	irgsp1_rep	three_prime_UTR	2348683	2348687	.	+	.	Parent=Os09t0130500-01
Chr09	irgsp1_rep	three_prime_UTR	2349929	2350233	.	+	.	Parent=Os09t0130500-01
Chr09	irgsp1_rep	mRNA	2351564	2352703	.	+	.	ID=Os09t0130700-00;Name=Os09t0130700-00;Locus_id=Os09g0130700;Note=Conserved hypothetical protein.;Transcript_evidence=EU944197 (DDBJ);ORF_evidence=Q6EQ50 (UniProt);TENOR=Os09t0130700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	2351564	2352703	.	+	0	Parent=Os09t0130700-00
Chr09	irgsp1_rep	mRNA	2355497	2361051	.	-	.	ID=Os09t0130800-01;Name=Os09t0130800-01;Locus_id=Os09g0130800;Note=Similar to predicted protein.;Transcript_evidence=AK069947 (DDBJ%2C Best hit);ORF_evidence=B8BD90 (UniProt);InterPro=Domain of unknown function DUF699%2C exodeoxyribonuclease V alpha chain (IPR007807),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J023036L18;Expression=AK069947;TENOR=Os09t0130800-01;KEGG=Os09t0130800-01
Chr09	irgsp1_rep	five_prime_UTR	2360809	2361051	.	-	.	Parent=Os09t0130800-01
Chr09	irgsp1_rep	CDS	2360783	2360808	.	-	0	Parent=Os09t0130800-01
Chr09	irgsp1_rep	CDS	2359606	2360621	.	-	1	Parent=Os09t0130800-01
Chr09	irgsp1_rep	CDS	2359080	2359363	.	-	2	Parent=Os09t0130800-01
Chr09	irgsp1_rep	CDS	2357084	2358127	.	-	0	Parent=Os09t0130800-01
Chr09	irgsp1_rep	CDS	2355939	2356107	.	-	0	Parent=Os09t0130800-01
Chr09	irgsp1_rep	CDS	2355589	2355779	.	-	2	Parent=Os09t0130800-01
Chr09	irgsp1_rep	three_prime_UTR	2355497	2355588	.	-	.	Parent=Os09t0130800-01
Chr09	irgsp1_rep	mRNA	2354862	2360993	.	-	.	ID=Os09t0130800-02;Name=Os09t0130800-02;Locus_id=Os09g0130800;Note=DEAD-like helicase%2C N-terminal domain containing protein.;Transcript_evidence=AK066693 (DDBJ%2C Best hit);ORF_evidence=B8BD90 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),Domain of unknown function DUF699%2C exodeoxyribonuclease V alpha chain (IPR007807),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J013074M06;Expression=AK066693;TENOR=Os09t0130800-02;KEGG=Os09t0130800-02
Chr09	irgsp1_rep	five_prime_UTR	2360809	2360993	.	-	.	Parent=Os09t0130800-02
Chr09	irgsp1_rep	CDS	2360783	2360808	.	-	0	Parent=Os09t0130800-02
Chr09	irgsp1_rep	CDS	2359606	2360621	.	-	1	Parent=Os09t0130800-02
Chr09	irgsp1_rep	CDS	2359080	2359363	.	-	2	Parent=Os09t0130800-02
Chr09	irgsp1_rep	CDS	2357084	2358127	.	-	0	Parent=Os09t0130800-02
Chr09	irgsp1_rep	CDS	2355939	2356107	.	-	0	Parent=Os09t0130800-02
Chr09	irgsp1_rep	CDS	2355622	2355779	.	-	2	Parent=Os09t0130800-02
Chr09	irgsp1_rep	CDS	2355191	2355439	.	-	0	Parent=Os09t0130800-02
Chr09	irgsp1_rep	three_prime_UTR	2354862	2355190	.	-	.	Parent=Os09t0130800-02
Chr09	irgsp1_rep	mRNA	2357522	2360984	.	-	.	ID=Os09t0130800-03;Name=Os09t0130800-03;Locus_id=Os09g0130800;Note=Similar to predicted protein.;Transcript_evidence=AK099972 (DDBJ%2C Best hit);ORF_evidence=B8BD90 (UniProt);InterPro=Domain of unknown function DUF699%2C exodeoxyribonuclease V alpha chain (IPR007807);NIAS_FLcDNA=J013127P19;Expression=AK099972;TENOR=Os09t0130800-03;KEGG=Os09t0130800-03
Chr09	irgsp1_rep	five_prime_UTR	2360809	2360984	.	-	.	Parent=Os09t0130800-03
Chr09	irgsp1_rep	CDS	2360783	2360808	.	-	0	Parent=Os09t0130800-03
Chr09	irgsp1_rep	CDS	2359606	2360621	.	-	1	Parent=Os09t0130800-03
Chr09	irgsp1_rep	CDS	2359080	2359363	.	-	2	Parent=Os09t0130800-03
Chr09	irgsp1_rep	CDS	2357522	2358127	.	-	0	Parent=Os09t0130800-03
Chr09	irgsp1_rep	mRNA	2354904	2357520	.	-	.	ID=Os09t0130800-04;Name=Os09t0130800-04;Locus_id=Os09g0130800;Note=Similar to predicted protein.;Transcript_evidence=AK061966 (DDBJ%2C Best hit);ORF_evidence=B8BD90 (UniProt);NIAS_FLcDNA=001-042-G11;Expression=AK061966;TENOR=Os09t0130800-04;KEGG=Os09t0130800-04
Chr09	irgsp1_rep	five_prime_UTR	2357519	2357520	.	-	.	Parent=Os09t0130800-04
Chr09	irgsp1_rep	CDS	2357084	2357518	.	-	0	Parent=Os09t0130800-04
Chr09	irgsp1_rep	CDS	2355939	2356107	.	-	0	Parent=Os09t0130800-04
Chr09	irgsp1_rep	CDS	2355622	2355779	.	-	2	Parent=Os09t0130800-04
Chr09	irgsp1_rep	CDS	2355191	2355439	.	-	0	Parent=Os09t0130800-04
Chr09	irgsp1_rep	three_prime_UTR	2354904	2355190	.	-	.	Parent=Os09t0130800-04
Chr09	irgsp1_rep	mRNA	2361311	2362285	.	+	.	ID=Os09t0130901-01;Name=Os09t0130901-01;Locus_id=Os09g0130901;Note=Hypothetical protein.;Transcript_evidence=AK242006 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J075104L08;TENOR=Os09t0130901-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	2361311	2361467	.	+	.	Parent=Os09t0130901-01
Chr09	irgsp1_rep	CDS	2361468	2361839	.	+	0	Parent=Os09t0130901-01
Chr09	irgsp1_rep	three_prime_UTR	2361840	2362285	.	+	.	Parent=Os09t0130901-01
Chr09	irgsp1_rep	mRNA	2364663	2370044	.	-	.	ID=Os09t0131000-01;Name=Os09t0131000-01;Locus_id=Os09g0131000;Note=Conserved hypothetical protein.;Transcript_evidence=AK061275 (DDBJ%2C Best hit);ORF_evidence=NP_001059511.1 (RefSeq);NIAS_FLcDNA=006-212-E07;TENOR=Os09t0131000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	2370043	2370044	.	-	.	Parent=Os09t0131000-01
Chr09	irgsp1_rep	CDS	2369611	2370042	.	-	0	Parent=Os09t0131000-01
Chr09	irgsp1_rep	three_prime_UTR	2369558	2369610	.	-	.	Parent=Os09t0131000-01
Chr09	irgsp1_rep	three_prime_UTR	2369355	2369434	.	-	.	Parent=Os09t0131000-01
Chr09	irgsp1_rep	three_prime_UTR	2367695	2367818	.	-	.	Parent=Os09t0131000-01
Chr09	irgsp1_rep	three_prime_UTR	2367097	2367145	.	-	.	Parent=Os09t0131000-01
Chr09	irgsp1_rep	three_prime_UTR	2366901	2366998	.	-	.	Parent=Os09t0131000-01
Chr09	irgsp1_rep	three_prime_UTR	2364663	2365022	.	-	.	Parent=Os09t0131000-01
Chr09	irgsp1_rep	mRNA	2385338	2386783	.	-	.	ID=Os09t0131150-01;Name=Os09t0131150-01;Locus_id=Os09g0131150;Note=Conserved hypothetical protein.;Transcript_evidence=AK243681 (DDBJ%2C Best hit);ORF_evidence=NP_001175724.1 (RefSeq);NIAS_FLcDNA=J100090I23;TENOR=Os09t0131150-01;KEGG=Os09t0131150-01
Chr09	irgsp1_rep	five_prime_UTR	2385860	2386783	.	-	.	Parent=Os09t0131150-01
Chr09	irgsp1_rep	CDS	2385527	2385859	.	-	0	Parent=Os09t0131150-01
Chr09	irgsp1_rep	three_prime_UTR	2385338	2385526	.	-	.	Parent=Os09t0131150-01
Chr09	irgsp1_rep	mRNA	2385641	2386788	.	+	.	ID=Os09t0131200-01;Name=Os09t0131200-01;Locus_id=Os09g0131200;Note=Similar to Elicitor-inducible LRR receptor-like protein EILP.;Transcript_evidence=AK070477 (DDBJ%2C Best hit);ORF_evidence=NP_001150753.1 (RefSeq);NIAS_FLcDNA=J023054F15;Expression=AK070477;TENOR=Os09t0131200-01;KEGG=Os09t0131200-01
Chr09	irgsp1_rep	CDS	2385641	2385740	.	+	0	Parent=Os09t0131200-01
Chr09	irgsp1_rep	CDS	2385751	2386499	.	+	2	Parent=Os09t0131200-01
Chr09	irgsp1_rep	three_prime_UTR	2386500	2386788	.	+	.	Parent=Os09t0131200-01
Chr09	irgsp1_rep	mRNA	2396780	2405236	.	-	.	ID=Os09t0131400-01;Name=Os09t0131400-01;Locus_id=Os09g0131400;Note=Hypothetical protein.;Transcript_evidence=AK068491 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013156A15;TENOR=Os09t0131400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	2404907	2405236	.	-	0	Parent=Os09t0131400-01
Chr09	irgsp1_rep	three_prime_UTR	2404663	2404906	.	-	.	Parent=Os09t0131400-01
Chr09	irgsp1_rep	three_prime_UTR	2404198	2404366	.	-	.	Parent=Os09t0131400-01
Chr09	irgsp1_rep	three_prime_UTR	2403304	2403386	.	-	.	Parent=Os09t0131400-01
Chr09	irgsp1_rep	three_prime_UTR	2402988	2403059	.	-	.	Parent=Os09t0131400-01
Chr09	irgsp1_rep	three_prime_UTR	2402539	2402591	.	-	.	Parent=Os09t0131400-01
Chr09	irgsp1_rep	three_prime_UTR	2402076	2402186	.	-	.	Parent=Os09t0131400-01
Chr09	irgsp1_rep	three_prime_UTR	2401897	2401997	.	-	.	Parent=Os09t0131400-01
Chr09	irgsp1_rep	three_prime_UTR	2401592	2401651	.	-	.	Parent=Os09t0131400-01
Chr09	irgsp1_rep	three_prime_UTR	2397555	2400579	.	-	.	Parent=Os09t0131400-01
Chr09	irgsp1_rep	three_prime_UTR	2397164	2397319	.	-	.	Parent=Os09t0131400-01
Chr09	irgsp1_rep	three_prime_UTR	2396780	2397017	.	-	.	Parent=Os09t0131400-01
Chr09	irgsp1_rep	mRNA	2396780	2400181	.	-	.	ID=Os09t0131400-02;Name=Os09t0131400-02;Locus_id=Os09g0131400;Note=Similar to tobamovirus multiplication 3.;Transcript_evidence=AK066362 (DDBJ%2C Best hit);ORF_evidence=Q402E9 (UniProt);InterPro=Domain of unknown function DUF1084 (IPR009457);NIAS_FLcDNA=J013063N07;Expression=AK066362;TENOR=Os09t0131400-02;KEGG=Os09t0131400-02
Chr09	irgsp1_rep	five_prime_UTR	2399430	2400181	.	-	.	Parent=Os09t0131400-02
Chr09	irgsp1_rep	CDS	2399163	2399429	.	-	0	Parent=Os09t0131400-02
Chr09	irgsp1_rep	three_prime_UTR	2397555	2399162	.	-	.	Parent=Os09t0131400-02
Chr09	irgsp1_rep	three_prime_UTR	2397164	2397301	.	-	.	Parent=Os09t0131400-02
Chr09	irgsp1_rep	three_prime_UTR	2396780	2397017	.	-	.	Parent=Os09t0131400-02
Chr09	irgsp1_rep	mRNA	2398931	2400017	.	-	.	ID=Os09t0131400-03;Name=Os09t0131400-03;Locus_id=Os09g0131400;Note=Similar to tobamovirus multiplication 3.;Transcript_evidence=AK071640 (DDBJ%2C Best hit);ORF_evidence=Q402E9 (UniProt);InterPro=Domain of unknown function DUF1084 (IPR009457);NIAS_FLcDNA=J023105I05;Expression=AK071640;TENOR=Os09t0131400-03;KEGG=Os09t0131400-03
Chr09	irgsp1_rep	five_prime_UTR	2399430	2400017	.	-	.	Parent=Os09t0131400-03
Chr09	irgsp1_rep	CDS	2399163	2399429	.	-	0	Parent=Os09t0131400-03
Chr09	irgsp1_rep	three_prime_UTR	2398931	2399162	.	-	.	Parent=Os09t0131400-03
Chr09	irgsp1_rep	mRNA	2458920	2474678	.	+	.	ID=Os09t0132200-01;Name=Os09t0132200-01;Locus_id=Os09g0132200;CGSNL Gene Symbol=GELP97;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 97;Oryzabase Gene Symbol Synonym(s)=OsGELP97%2C OsGELP97a%2C OsGELP97b;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 97;Note=Esterase%2C SGNH hydrolase-type domain containing protein.;Transcript_evidence=AK061026 (DDBJ%2C Best hit);ORF_evidence=B7E4N3 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087),Esterase%2C SGNH hydrolase-type (IPR013830),Esterase%2C SGNH hydrolase-type%2C subgroup (IPR013831);NIAS_FLcDNA=006-204-F09;Oryzabase=11047;Expression=AK061026;TENOR=Os09t0132200-01;KEGG=Os09t0132200-01
Chr09	irgsp1_rep	five_prime_UTR	2458920	2458949	.	+	.	Parent=Os09t0132200-01
Chr09	irgsp1_rep	CDS	2458950	2459321	.	+	0	Parent=Os09t0132200-01
Chr09	irgsp1_rep	CDS	2471065	2471554	.	+	0	Parent=Os09t0132200-01
Chr09	irgsp1_rep	CDS	2474323	2474516	.	+	2	Parent=Os09t0132200-01
Chr09	irgsp1_rep	three_prime_UTR	2474517	2474678	.	+	.	Parent=Os09t0132200-01
Chr09	irgsp1_rep	mRNA	2458920	2471739	.	+	.	ID=Os09t0132200-02;Name=Os09t0132200-02;Locus_id=Os09g0132200;CGSNL Gene Symbol=GELP97;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 97;Oryzabase Gene Symbol Synonym(s)=OsGELP97%2C OsGELP97a%2C OsGELP97b;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 97;Note=Similar to anther-specific proline-rich protein APG.;Transcript_evidence=AK060124 (DDBJ%2C Best hit);ORF_evidence=NP_001150129.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=006-308-H03;Oryzabase=11047;Expression=AK060124;TENOR=Os09t0132200-02;KEGG=Os09t0132200-02
Chr09	irgsp1_rep	five_prime_UTR	2458920	2458949	.	+	.	Parent=Os09t0132200-02
Chr09	irgsp1_rep	CDS	2458950	2459321	.	+	0	Parent=Os09t0132200-02
Chr09	irgsp1_rep	CDS	2471065	2471559	.	+	0	Parent=Os09t0132200-02
Chr09	irgsp1_rep	three_prime_UTR	2471560	2471739	.	+	.	Parent=Os09t0132200-02
Chr09	irgsp1_rep	mRNA	2489928	2493529	.	-	.	ID=Os09t0132600-01;Name=Os09t0132600-01;Locus_id=Os09g0132600;Oryzabase Gene Symbol Synonym(s)=MORF8-like%2C OsMORF8a%2C MORF8a%2C OsMORF8-1%2C MORF8-1;Oryzabase Gene Name Synonym(s)=multiple organellar RNA editing factor 8-like%2C multiple organellar RNA editing factor 8a;Note=Similar to DAG protein.;Transcript_evidence=AK109362 (DDBJ%2C Best hit),AK072233 (DDBJ%2C Best hit),AK098936 (DDBJ%2C Best hit);ORF_evidence=NP_001149362.1 (RefSeq);NIAS_FLcDNA=006-206-E06,J023001H21,J013036D20;Oryzabase=22399;Expression=AK109362;TENOR=Os09t0132600-01;KEGG=Os09t0132600-01
Chr09	irgsp1_rep	five_prime_UTR	2493503	2493529	.	-	.	Parent=Os09t0132600-01
Chr09	irgsp1_rep	CDS	2493144	2493502	.	-	0	Parent=Os09t0132600-01
Chr09	irgsp1_rep	CDS	2491606	2491703	.	-	1	Parent=Os09t0132600-01
Chr09	irgsp1_rep	CDS	2491447	2491512	.	-	2	Parent=Os09t0132600-01
Chr09	irgsp1_rep	CDS	2490057	2490730	.	-	2	Parent=Os09t0132600-01
Chr09	irgsp1_rep	three_prime_UTR	2489928	2490056	.	-	.	Parent=Os09t0132600-01
Chr09	irgsp1_rep	mRNA	2501675	2504379	.	+	.	ID=Os09t0132900-01;Name=Os09t0132900-01;Locus_id=Os09g0132900;CGSNL Gene Symbol=GELP98;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 98;Oryzabase Gene Symbol Synonym(s)=OsGELP98%2C OsGELP98a%2C OsGELP98b;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 98;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK059484 (DDBJ%2C Best hit);ORF_evidence=NP_001150129.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087),Esterase%2C SGNH hydrolase-type%2C subgroup (IPR013831);NIAS_FLcDNA=001-028-F09;Oryzabase=11048;Expression=AK059484;TENOR=Os09t0132900-01;KEGG=Os09t0132900-01
Chr09	irgsp1_rep	five_prime_UTR	2501675	2501731	.	+	.	Parent=Os09t0132900-01
Chr09	irgsp1_rep	CDS	2501732	2502106	.	+	0	Parent=Os09t0132900-01
Chr09	irgsp1_rep	CDS	2502231	2502696	.	+	0	Parent=Os09t0132900-01
Chr09	irgsp1_rep	CDS	2503952	2504145	.	+	2	Parent=Os09t0132900-01
Chr09	irgsp1_rep	three_prime_UTR	2504146	2504379	.	+	.	Parent=Os09t0132900-01
Chr09	irgsp1_rep	mRNA	2501678	2504166	.	+	.	ID=Os09t0132900-02;Name=Os09t0132900-02;Locus_id=Os09g0132900;CGSNL Gene Symbol=GELP98;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 98;Oryzabase Gene Symbol Synonym(s)=OsGELP98%2C OsGELP98a%2C OsGELP98b;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 98;Note=Similar to anther-specific proline-rich protein APG.;Transcript_evidence=AK059766 (DDBJ%2C Best hit);ORF_evidence=NP_001150129.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087),Esterase%2C SGNH hydrolase-type%2C subgroup (IPR013831);NIAS_FLcDNA=006-203-G04;Oryzabase=11048;Expression=AK059766;TENOR=Os09t0132900-02;KEGG=Os09t0132900-02
Chr09	irgsp1_rep	five_prime_UTR	2501678	2501731	.	+	.	Parent=Os09t0132900-02
Chr09	irgsp1_rep	CDS	2501732	2502106	.	+	0	Parent=Os09t0132900-02
Chr09	irgsp1_rep	CDS	2502207	2502696	.	+	0	Parent=Os09t0132900-02
Chr09	irgsp1_rep	CDS	2503952	2504145	.	+	2	Parent=Os09t0132900-02
Chr09	irgsp1_rep	three_prime_UTR	2504146	2504166	.	+	.	Parent=Os09t0132900-02
Chr09	irgsp1_rep	mRNA	2505646	2508270	.	-	.	ID=Os09t0133000-01;Name=Os09t0133000-01;Locus_id=Os09g0133000;Note=SWIB/MDM2 domain containing protein.;Transcript_evidence=AK099484 (DDBJ%2C Best hit);ORF_evidence=NP_001146978.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=SWIB/MDM2 domain (IPR003121),SWIB domain (IPR019835);NIAS_FLcDNA=J013025N09;Expression=AK099484;TENOR=Os09t0133000-01;KEGG=Os09t0133000-01
Chr09	irgsp1_rep	five_prime_UTR	2508050	2508270	.	-	.	Parent=Os09t0133000-01
Chr09	irgsp1_rep	CDS	2507873	2508049	.	-	0	Parent=Os09t0133000-01
Chr09	irgsp1_rep	CDS	2505911	2506042	.	-	0	Parent=Os09t0133000-01
Chr09	irgsp1_rep	three_prime_UTR	2505646	2505910	.	-	.	Parent=Os09t0133000-01
Chr09	irgsp1_rep	mRNA	2512448	2517177	.	-	.	ID=Os09t0133200-01;Name=Os09t0133200-01;Locus_id=Os09g0133200;Note=Similar to Dehydrogenase/reductase SDR family member 4 (EC 1.1.1.184) (NADPH- dependent carbonyl reductase/NADP-retinol dehydrogenase) (CR) (PHCR) (Peroxisomal short-chain alcohol dehydrogenase) (NADPH-dependent retinol dehydrogenase/reductase) (NDRD) (SCAD-SRL) (humNRDR) (PSCD). Splice isoform 2.;Transcript_evidence=AK073545 (DDBJ%2C Best hit);ORF_evidence=NP_001149232.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);NIAS_FLcDNA=J033041K02;TENOR=Os09t0133200-01
Chr09	irgsp1_rep	five_prime_UTR	2517003	2517177	.	-	.	Parent=Os09t0133200-01
Chr09	irgsp1_rep	CDS	2516871	2517002	.	-	0	Parent=Os09t0133200-01
Chr09	irgsp1_rep	CDS	2516684	2516800	.	-	0	Parent=Os09t0133200-01
Chr09	irgsp1_rep	CDS	2515323	2515457	.	-	0	Parent=Os09t0133200-01
Chr09	irgsp1_rep	CDS	2515098	2515223	.	-	0	Parent=Os09t0133200-01
Chr09	irgsp1_rep	CDS	2514081	2514182	.	-	0	Parent=Os09t0133200-01
Chr09	irgsp1_rep	CDS	2512632	2512781	.	-	0	Parent=Os09t0133200-01
Chr09	irgsp1_rep	three_prime_UTR	2512448	2512631	.	-	.	Parent=Os09t0133200-01
Chr09	irgsp1_rep	mRNA	2512468	2517089	.	-	.	ID=Os09t0133200-02;Name=Os09t0133200-02;Locus_id=Os09g0133200;Note=Similar to Dehydrogenase/reductase SDR family member 4 (EC 1.1.1.184) (NADPH- dependent carbonyl reductase/NADP-retinol dehydrogenase) (CR) (PHCR) (Peroxisomal short-chain alcohol dehydrogenase) (NADPH-dependent retinol dehydrogenase/reductase) (NDRD) (SCAD-SRL) (humNRDR) (PSCD). Splice isoform 2.;Transcript_evidence=AK109426 (DDBJ%2C Best hit);ORF_evidence=NP_001149232.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);NIAS_FLcDNA=006-306-E02;TENOR=Os09t0133200-02
Chr09	irgsp1_rep	five_prime_UTR	2517003	2517089	.	-	.	Parent=Os09t0133200-02
Chr09	irgsp1_rep	CDS	2516871	2517002	.	-	0	Parent=Os09t0133200-02
Chr09	irgsp1_rep	CDS	2516684	2516800	.	-	0	Parent=Os09t0133200-02
Chr09	irgsp1_rep	CDS	2515323	2515457	.	-	0	Parent=Os09t0133200-02
Chr09	irgsp1_rep	CDS	2515098	2515223	.	-	0	Parent=Os09t0133200-02
Chr09	irgsp1_rep	CDS	2514081	2514182	.	-	0	Parent=Os09t0133200-02
Chr09	irgsp1_rep	CDS	2512632	2512781	.	-	0	Parent=Os09t0133200-02
Chr09	irgsp1_rep	three_prime_UTR	2512468	2512631	.	-	.	Parent=Os09t0133200-02
Chr09	irgsp1_rep	mRNA	2512969	2513226	.	+	.	ID=Os09t0133250-00;Name=Os09t0133250-00;Locus_id=Os09g0133250;Note=Non-protein coding transcript.;Transcript_evidence=EU957427 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0133250-00
Chr09	irgsp1_rep	exon	2512969	2513226	.	+	.	Parent=Os09t0133250-00
Chr09	irgsp1_rep	mRNA	2549092	2552715	.	+	.	ID=Os09t0133600-01;Name=Os09t0133600-01;Locus_id=Os09g0133600;RAP-DB Gene Symbol Synonym(s)=OsFBN1;RAP-DB Gene Name Synonym(s)=fibrillin 1;Note=Fibrillin%2C Plastoglobule (PG) formation and lipid metabolism in chloroplasts%2C Heat stress response;Transcript_evidence=AK099394;ORF_evidence=Q6K439;InterPro=Plastid lipid-associated protein/fibrillin conserved domain (IPR006843);NIAS_FLcDNA=J013000I12;Manual Curation=March 17%2C 2020;Literature_PMID=31203888;Expression=AK099394;TENOR=Os09t0133600-01;KEGG=Os09t0133600-01;Subcellular location=chloroplast (GO:0009507)
Chr09	irgsp1_rep	five_prime_UTR	2549092	2549151	.	+	.	Parent=Os09t0133600-01
Chr09	irgsp1_rep	CDS	2549152	2549600	.	+	0	Parent=Os09t0133600-01
Chr09	irgsp1_rep	CDS	2551213	2551411	.	+	1	Parent=Os09t0133600-01
Chr09	irgsp1_rep	CDS	2552182	2552493	.	+	0	Parent=Os09t0133600-01
Chr09	irgsp1_rep	three_prime_UTR	2552494	2552715	.	+	.	Parent=Os09t0133600-01
Chr09	irgsp1_rep	mRNA	2549094	2552721	.	+	.	ID=Os09t0133600-02;Name=Os09t0133600-02;Locus_id=Os09g0133600;CGSNL Gene Symbol=FBN1;CGSNL Gene Name=FIBRILLIN 1;Oryzabase Gene Symbol Synonym(s)=OsFBN1;Oryzabase Gene Name Synonym(s)=fibrillin 1;Note=PAP fibrillin family protein.;Transcript_evidence=AK104742 (DDBJ%2C Best hit),AK061477 (DDBJ%2C Best hit);ORF_evidence=B7EP08 (UniProt);GO=Cellular Component: chloroplast (GO:0009507),Molecular Function: structural molecule activity (GO:0005198);InterPro=Plastid lipid-associated protein/fibrillin conserved domain (IPR006843);NIAS_FLcDNA=001-038-E02,006-308-F11;Oryzabase=23580;Expression=AK104742;TENOR=Os09t0133600-02;KEGG=Os09t0133600-02
Chr09	irgsp1_rep	CDS	2549094	2549186	.	+	0	Parent=Os09t0133600-02
Chr09	irgsp1_rep	CDS	2549479	2549600	.	+	0	Parent=Os09t0133600-02
Chr09	irgsp1_rep	CDS	2551213	2551411	.	+	1	Parent=Os09t0133600-02
Chr09	irgsp1_rep	CDS	2552182	2552493	.	+	0	Parent=Os09t0133600-02
Chr09	irgsp1_rep	three_prime_UTR	2552494	2552721	.	+	.	Parent=Os09t0133600-02
Chr09	irgsp1_rep	mRNA	2557391	2558288	.	-	.	ID=Os09t0133650-00;Name=Os09t0133650-00;Locus_id=Os09g0133650;Note=Non-protein coding transcript.;Transcript_evidence=BT085269 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0133650-00
Chr09	irgsp1_rep	exon	2558236	2558288	.	-	.	Parent=Os09t0133650-00
Chr09	irgsp1_rep	exon	2557391	2557558	.	-	.	Parent=Os09t0133650-00
Chr09	irgsp1_rep	mRNA	2557324	2561138	.	+	.	ID=Os09t0133700-01;Name=Os09t0133700-01;Locus_id=Os09g0133700;Note=ATPase%2C BadF/BadG/BcrA/BcrD type domain containing protein.;Transcript_evidence=AK101816 (DDBJ%2C Best hit);ORF_evidence=NP_001149858.1 (RefSeq);InterPro=ATPase%2C BadF/BadG/BcrA/BcrD type (IPR002731);NIAS_FLcDNA=J033067C05;Expression=AK101816;TENOR=Os09t0133700-01;KEGG=Os09t0133700-01
Chr09	irgsp1_rep	five_prime_UTR	2557324	2557345	.	+	.	Parent=Os09t0133700-01
Chr09	irgsp1_rep	CDS	2557346	2557541	.	+	0	Parent=Os09t0133700-01
Chr09	irgsp1_rep	CDS	2558217	2558364	.	+	2	Parent=Os09t0133700-01
Chr09	irgsp1_rep	CDS	2558553	2558744	.	+	1	Parent=Os09t0133700-01
Chr09	irgsp1_rep	CDS	2559166	2559294	.	+	1	Parent=Os09t0133700-01
Chr09	irgsp1_rep	CDS	2559656	2559825	.	+	1	Parent=Os09t0133700-01
Chr09	irgsp1_rep	CDS	2560234	2560364	.	+	2	Parent=Os09t0133700-01
Chr09	irgsp1_rep	CDS	2560679	2560756	.	+	0	Parent=Os09t0133700-01
Chr09	irgsp1_rep	three_prime_UTR	2560757	2561138	.	+	.	Parent=Os09t0133700-01
Chr09	irgsp1_rep	mRNA	2561882	2565526	.	-	.	ID=Os09t0133800-01;Name=Os09t0133800-01;Locus_id=Os09g0133800;Note=Conserved hypothetical protein.;Transcript_evidence=AK069372 (DDBJ%2C Best hit);ORF_evidence=A2YYQ1 (UniProt);NIAS_FLcDNA=J023010J11;Expression=AK069372;TENOR=Os09t0133800-01;KEGG=Os09t0133800-01
Chr09	irgsp1_rep	five_prime_UTR	2565214	2565526	.	-	.	Parent=Os09t0133800-01
Chr09	irgsp1_rep	five_prime_UTR	2564846	2564852	.	-	.	Parent=Os09t0133800-01
Chr09	irgsp1_rep	CDS	2563140	2564845	.	-	0	Parent=Os09t0133800-01
Chr09	irgsp1_rep	CDS	2562891	2563017	.	-	1	Parent=Os09t0133800-01
Chr09	irgsp1_rep	CDS	2562677	2562778	.	-	0	Parent=Os09t0133800-01
Chr09	irgsp1_rep	CDS	2562302	2562352	.	-	0	Parent=Os09t0133800-01
Chr09	irgsp1_rep	three_prime_UTR	2561882	2562301	.	-	.	Parent=Os09t0133800-01
Chr09	irgsp1_rep	mRNA	2561963	2563517	.	-	.	ID=Os09t0133800-02;Name=Os09t0133800-02;Locus_id=Os09g0133800;Note=Hypothetical conserved gene.;Transcript_evidence=AK060425 (DDBJ%2C Best hit);ORF_evidence=A2YYQ1 (UniProt);NIAS_FLcDNA=001-010-H09;Expression=AK060425;TENOR=Os09t0133800-02;KEGG=Os09t0133800-02
Chr09	irgsp1_rep	five_prime_UTR	2563517	2563517	.	-	.	Parent=Os09t0133800-02
Chr09	irgsp1_rep	CDS	2563004	2563516	.	-	0	Parent=Os09t0133800-02
Chr09	irgsp1_rep	three_prime_UTR	2562891	2563003	.	-	.	Parent=Os09t0133800-02
Chr09	irgsp1_rep	three_prime_UTR	2562677	2562778	.	-	.	Parent=Os09t0133800-02
Chr09	irgsp1_rep	three_prime_UTR	2561963	2562352	.	-	.	Parent=Os09t0133800-02
Chr09	irgsp1_rep	mRNA	2597219	2600725	.	+	.	ID=Os09t0134400-01;Name=Os09t0134400-01;Locus_id=Os09g0134400;Note=Phospholipase A2%2C active site domain containing protein.;Transcript_evidence=AK069256 (DDBJ%2C Best hit);ORF_evidence=A3BWA7 (UniProt);NIAS_FLcDNA=J023012H09;Expression=AK069256;TENOR=Os09t0134400-01;KEGG=Os09t0134400-01
Chr09	irgsp1_rep	five_prime_UTR	2597219	2597314	.	+	.	Parent=Os09t0134400-01
Chr09	irgsp1_rep	CDS	2597315	2598097	.	+	0	Parent=Os09t0134400-01
Chr09	irgsp1_rep	three_prime_UTR	2598098	2600081	.	+	.	Parent=Os09t0134400-01
Chr09	irgsp1_rep	three_prime_UTR	2600162	2600725	.	+	.	Parent=Os09t0134400-01
Chr09	irgsp1_rep	mRNA	2607421	2615934	.	-	.	ID=Os09t0134500-01;Name=Os09t0134500-01;Locus_id=Os09g0134500;Oryzabase Gene Symbol Synonym(s)=OsSET33%2C SET33%2C OsSDG723%2C SDG723%2C OsTrx1%2C Trx1%2C OsTrx1/SDG723%2C DLN219%2C OsDLN219;Oryzabase Gene Name Synonym(s)=SET protein 33%2C Trithorax1%2C TRITHORAX-like protein OsTrx1%2C SET domain group protein 723%2C DLN repressor 219%2C DLN motif protein 219;Note=Hypothetical conserved gene.;Transcript_evidence=AK065095 (DDBJ%2C Best hit);ORF_evidence=XP_002301643.1 (RefSeq);GO=Biological Process: intracellular signal transduction (GO:0035556),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=PWWP (IPR000313),Zinc finger%2C PHD-type (IPR001965),Protein kinase C-like%2C phorbol ester/diacylglycerol binding (IPR002219),FY-rich%2C N-terminal (IPR003888),FY-rich%2C C-terminal (IPR003889),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),FY-rich%2C C-terminal subgroup (IPR018516),FY-rich%2C N-terminal subgroup (IPR018518),Zinc finger%2C PHD-type%2C conserved site (IPR019786),Zinc finger%2C PHD-finger (IPR019787);NIAS_FLcDNA=J013001M12;Oryzabase=13397;Expression=AK065095;TENOR=Os09t0134500-01;KEGG=Os09t0134500-01
Chr09	irgsp1_rep	five_prime_UTR	2615722	2615934	.	-	.	Parent=Os09t0134500-01
Chr09	irgsp1_rep	CDS	2615243	2615721	.	-	0	Parent=Os09t0134500-01
Chr09	irgsp1_rep	CDS	2615066	2615118	.	-	1	Parent=Os09t0134500-01
Chr09	irgsp1_rep	CDS	2614908	2614981	.	-	2	Parent=Os09t0134500-01
Chr09	irgsp1_rep	CDS	2614409	2614622	.	-	0	Parent=Os09t0134500-01
Chr09	irgsp1_rep	CDS	2613519	2613642	.	-	2	Parent=Os09t0134500-01
Chr09	irgsp1_rep	CDS	2613331	2613435	.	-	1	Parent=Os09t0134500-01
Chr09	irgsp1_rep	CDS	2613029	2613225	.	-	1	Parent=Os09t0134500-01
Chr09	irgsp1_rep	CDS	2611612	2611704	.	-	2	Parent=Os09t0134500-01
Chr09	irgsp1_rep	CDS	2611407	2611504	.	-	2	Parent=Os09t0134500-01
Chr09	irgsp1_rep	CDS	2610248	2610406	.	-	0	Parent=Os09t0134500-01
Chr09	irgsp1_rep	CDS	2609650	2609775	.	-	0	Parent=Os09t0134500-01
Chr09	irgsp1_rep	CDS	2609513	2609560	.	-	0	Parent=Os09t0134500-01
Chr09	irgsp1_rep	CDS	2609317	2609434	.	-	0	Parent=Os09t0134500-01
Chr09	irgsp1_rep	CDS	2609182	2609247	.	-	2	Parent=Os09t0134500-01
Chr09	irgsp1_rep	CDS	2609034	2609095	.	-	2	Parent=Os09t0134500-01
Chr09	irgsp1_rep	CDS	2608901	2608957	.	-	0	Parent=Os09t0134500-01
Chr09	irgsp1_rep	CDS	2608720	2608788	.	-	0	Parent=Os09t0134500-01
Chr09	irgsp1_rep	CDS	2608345	2608534	.	-	0	Parent=Os09t0134500-01
Chr09	irgsp1_rep	CDS	2607529	2607818	.	-	2	Parent=Os09t0134500-01
Chr09	irgsp1_rep	three_prime_UTR	2607421	2607528	.	-	.	Parent=Os09t0134500-01
Chr09	irgsp1_rep	mRNA	2601653	2615905	.	-	.	ID=Os09t0134500-02;Name=Os09t0134500-02;Locus_id=Os09g0134500;RAP-DB Gene Symbol Synonym(s)=OsTrx1%2C SDG723%2C OsSET33;RAP-DB Gene Name Synonym(s)=Oryza sativa Trithorax1%2C SET Protein 33;Oryzabase Gene Symbol Synonym(s)=OsSET33%2C SET33%2C OsSDG723%2C SDG723%2C OsTrx1%2C Trx1%2C OsTrx1/SDG723%2C DLN219%2C OsDLN219;Oryzabase Gene Name Synonym(s)=SET protein 33%2C Trithorax1%2C TRITHORAX-like protein OsTrx1%2C SET domain group protein 723%2C DLN repressor 219%2C DLN motif protein 219;Note=Trithorax group protein%2C Regulation of flowering time;Transcript_evidence=AK074022;ORF_evidence=Q6K431;GO=Biological Process: intracellular signal transduction (GO:0035556),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Cellular Component: nucleus (GO:0005634);InterPro=PWWP domain (IPR000313),FY-rich%2C N-terminal (IPR003888),FY-rich%2C C-terminal (IPR003889),Protein kinase C-like%2C phorbol ester/diacylglycerol-binding domain (IPR002219),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C PHD-finger (IPR019787),SET domain (IPR001214),Post-SET domain (IPR003616),Zinc finger%2C PHD-type%2C conserved site (IPR019786);NIAS_FLcDNA=J033074A15;Manual Curation=March 20%2C 2014;Literature_PMID=24420930;Oryzabase=13397;Expression=AK074022;TENOR=Os09t0134500-02;KEGG=Os09t0134500-02
Chr09	irgsp1_rep	five_prime_UTR	2615722	2615905	.	-	.	Parent=Os09t0134500-02
Chr09	irgsp1_rep	CDS	2615243	2615721	.	-	0	Parent=Os09t0134500-02
Chr09	irgsp1_rep	CDS	2615066	2615118	.	-	1	Parent=Os09t0134500-02
Chr09	irgsp1_rep	CDS	2614908	2614981	.	-	2	Parent=Os09t0134500-02
Chr09	irgsp1_rep	CDS	2614409	2614622	.	-	0	Parent=Os09t0134500-02
Chr09	irgsp1_rep	CDS	2613519	2613642	.	-	2	Parent=Os09t0134500-02
Chr09	irgsp1_rep	CDS	2613331	2613435	.	-	1	Parent=Os09t0134500-02
Chr09	irgsp1_rep	CDS	2613029	2613225	.	-	1	Parent=Os09t0134500-02
Chr09	irgsp1_rep	CDS	2611612	2611704	.	-	2	Parent=Os09t0134500-02
Chr09	irgsp1_rep	CDS	2611407	2611504	.	-	2	Parent=Os09t0134500-02
Chr09	irgsp1_rep	CDS	2610248	2610406	.	-	0	Parent=Os09t0134500-02
Chr09	irgsp1_rep	CDS	2609650	2609775	.	-	0	Parent=Os09t0134500-02
Chr09	irgsp1_rep	CDS	2609513	2609560	.	-	0	Parent=Os09t0134500-02
Chr09	irgsp1_rep	CDS	2609317	2609434	.	-	0	Parent=Os09t0134500-02
Chr09	irgsp1_rep	CDS	2609182	2609247	.	-	2	Parent=Os09t0134500-02
Chr09	irgsp1_rep	CDS	2609034	2609095	.	-	2	Parent=Os09t0134500-02
Chr09	irgsp1_rep	CDS	2608901	2608957	.	-	0	Parent=Os09t0134500-02
Chr09	irgsp1_rep	CDS	2608720	2608788	.	-	0	Parent=Os09t0134500-02
Chr09	irgsp1_rep	CDS	2608345	2608534	.	-	0	Parent=Os09t0134500-02
Chr09	irgsp1_rep	CDS	2607555	2607818	.	-	2	Parent=Os09t0134500-02
Chr09	irgsp1_rep	CDS	2606704	2606765	.	-	2	Parent=Os09t0134500-02
Chr09	irgsp1_rep	CDS	2605855	2605932	.	-	0	Parent=Os09t0134500-02
Chr09	irgsp1_rep	CDS	2604181	2604276	.	-	0	Parent=Os09t0134500-02
Chr09	irgsp1_rep	CDS	2603281	2603384	.	-	0	Parent=Os09t0134500-02
Chr09	irgsp1_rep	CDS	2603074	2603206	.	-	1	Parent=Os09t0134500-02
Chr09	irgsp1_rep	three_prime_UTR	2603064	2603073	.	-	.	Parent=Os09t0134500-02
Chr09	irgsp1_rep	three_prime_UTR	2601653	2601958	.	-	.	Parent=Os09t0134500-02
Chr09	irgsp1_rep	mRNA	2640763	2643481	.	-	.	ID=Os09t0134900-01;Name=Os09t0134900-01;Locus_id=Os09g0134900;Note=Non-protein coding transcript.;Transcript_evidence=AK101562 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J033050D19;TENOR=Os09t0134900-01
Chr09	irgsp1_rep	exon	2642980	2643481	.	-	.	Parent=Os09t0134900-01
Chr09	irgsp1_rep	exon	2641791	2642781	.	-	.	Parent=Os09t0134900-01
Chr09	irgsp1_rep	exon	2640763	2641662	.	-	.	Parent=Os09t0134900-01
Chr09	irgsp1_rep	mRNA	2642248	2643368	.	-	.	ID=Os09t0134900-02;Name=Os09t0134900-02;Locus_id=Os09g0134900;Note=Hypothetical gene.;Transcript_evidence=AK063225 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-112-E10;Expression=AK063225;TENOR=Os09t0134900-02;KEGG=Os09t0134900-02
Chr09	irgsp1_rep	five_prime_UTR	2643368	2643368	.	-	.	Parent=Os09t0134900-02
Chr09	irgsp1_rep	CDS	2643176	2643367	.	-	0	Parent=Os09t0134900-02
Chr09	irgsp1_rep	CDS	2642980	2643034	.	-	0	Parent=Os09t0134900-02
Chr09	irgsp1_rep	CDS	2642750	2642781	.	-	2	Parent=Os09t0134900-02
Chr09	irgsp1_rep	three_prime_UTR	2642710	2642749	.	-	.	Parent=Os09t0134900-02
Chr09	irgsp1_rep	three_prime_UTR	2642443	2642521	.	-	.	Parent=Os09t0134900-02
Chr09	irgsp1_rep	three_prime_UTR	2642248	2642320	.	-	.	Parent=Os09t0134900-02
Chr09	irgsp1_rep	mRNA	2668252	2669512	.	+	.	ID=Os09t0135100-00;Name=Os09t0135100-00;Locus_id=Os09g0135100;Note=Hypothetical conserved gene.;Transcript_evidence=CT833393 (DDBJ%2C Best hit);ORF_evidence=F2EL68 (UniProt);TENOR=Os09t0135100-00;KEGG=Os09t0135100-00
Chr09	irgsp1_rep	five_prime_UTR	2668252	2668440	.	+	.	Parent=Os09t0135100-00
Chr09	irgsp1_rep	CDS	2668441	2668542	.	+	0	Parent=Os09t0135100-00
Chr09	irgsp1_rep	CDS	2668855	2668907	.	+	0	Parent=Os09t0135100-00
Chr09	irgsp1_rep	CDS	2669047	2669174	.	+	1	Parent=Os09t0135100-00
Chr09	irgsp1_rep	CDS	2669270	2669292	.	+	2	Parent=Os09t0135100-00
Chr09	irgsp1_rep	three_prime_UTR	2669293	2669512	.	+	.	Parent=Os09t0135100-00
Chr09	irgsp1_rep	mRNA	2668150	2668742	.	-	.	ID=Os09t0135200-01;Name=Os09t0135200-01;Locus_id=Os09g0135200;Note=Hypothetical protein.;Transcript_evidence=AK062455 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-103-C09;Expression=AK062455;TENOR=Os09t0135200-01;KEGG=Os09t0135200-01
Chr09	irgsp1_rep	five_prime_UTR	2668661	2668742	.	-	.	Parent=Os09t0135200-01
Chr09	irgsp1_rep	CDS	2668283	2668660	.	-	0	Parent=Os09t0135200-01
Chr09	irgsp1_rep	three_prime_UTR	2668150	2668282	.	-	.	Parent=Os09t0135200-01
Chr09	irgsp1_rep	mRNA	2685796	2688286	.	+	.	ID=Os09t0135400-01;Name=Os09t0135400-01;Locus_id=Os09g0135400;Note=Similar to octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein.;Transcript_evidence=AK103761 (DDBJ%2C Best hit);ORF_evidence=NP_564794.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Phox/Bem1p (IPR000270),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J033143G11;TENOR=Os09t0135400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	2685796	2685797	.	+	.	Parent=Os09t0135400-01
Chr09	irgsp1_rep	CDS	2685798	2688158	.	+	0	Parent=Os09t0135400-01
Chr09	irgsp1_rep	three_prime_UTR	2688159	2688286	.	+	.	Parent=Os09t0135400-01
Chr09	irgsp1_rep	mRNA	2688939	2691246	.	-	.	ID=Os09t0135501-01;Name=Os09t0135501-01;Locus_id=Os09g0135501;Note=Conserved hypothetical protein.;Transcript_evidence=AK242573 (DDBJ%2C Best hit);ORF_evidence=NP_001175725.1 (RefSeq);NIAS_FLcDNA=J090008H08;TENOR=Os09t0135501-01;KEGG=Os09t0135501-01
Chr09	irgsp1_rep	five_prime_UTR	2691106	2691246	.	-	.	Parent=Os09t0135501-01
Chr09	irgsp1_rep	CDS	2690623	2691105	.	-	0	Parent=Os09t0135501-01
Chr09	irgsp1_rep	three_prime_UTR	2688939	2690622	.	-	.	Parent=Os09t0135501-01
Chr09	irgsp1_rep	mRNA	2697319	2702656	.	+	.	ID=Os09t0135700-01;Name=Os09t0135700-01;Locus_id=Os09g0135700;RAP-DB Gene Symbol Synonym(s)=OsPFA-DSP1;RAP-DB Gene Name Synonym(s)=plant and fungi atypical dual-specificity phosphatase 1;Oryzabase Gene Symbol Synonym(s)=OsPFA-DSP1%2C OsPP105;Oryzabase Gene Name Synonym(s)=plant and fungi atypical dual-specificity phosphatase 1%2C Protein phosphatase 105;Note=Protein tyrosine phosphatase%2C Negative regulation of drought stress response;Transcript_evidence=AK121831;ORF_evidence=Q6K461;GO=Biological Process: dephosphorylation (GO:0016311),Molecular Function: protein tyrosine phosphatase activity (GO:0004725);InterPro=Protein-tyrosine phosphatase%2C SIW14-like (IPR004861),Protein-tyrosine phosphatase SIW14-like%2C eukaryotic (IPR020428),Protein-tyrosine phosphatase-like (IPR029021),Protein-tyrosine phosphatase%2C active site (IPR016130);NIAS_FLcDNA=J033099M08;Manual Curation=April 25%2C 2017;Literature_PMID=22218675;Oryzabase=10259;Expression=AK121831;TENOR=Os09t0135700-01;KEGG=Os09t0135700-01 (EC:3.1.3.48);Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737)
Chr09	irgsp1_rep	five_prime_UTR	2697319	2697512	.	+	.	Parent=Os09t0135700-01
Chr09	irgsp1_rep	CDS	2697513	2697808	.	+	0	Parent=Os09t0135700-01
Chr09	irgsp1_rep	CDS	2697891	2697984	.	+	1	Parent=Os09t0135700-01
Chr09	irgsp1_rep	CDS	2701707	2701764	.	+	0	Parent=Os09t0135700-01
Chr09	irgsp1_rep	CDS	2701842	2701885	.	+	2	Parent=Os09t0135700-01
Chr09	irgsp1_rep	CDS	2701978	2702154	.	+	0	Parent=Os09t0135700-01
Chr09	irgsp1_rep	three_prime_UTR	2702155	2702656	.	+	.	Parent=Os09t0135700-01
Chr09	irgsp1_rep	mRNA	2703216	2707346	.	-	.	ID=Os09t0135800-01;Name=Os09t0135800-01;Locus_id=Os09g0135800;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK102074 (DDBJ%2C Best hit);ORF_evidence=B6TYD9 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033082G22;Expression=AK102074;TENOR=Os09t0135800-01;KEGG=Os09t0135800-01
Chr09	irgsp1_rep	five_prime_UTR	2707213	2707346	.	-	.	Parent=Os09t0135800-01
Chr09	irgsp1_rep	CDS	2705461	2707212	.	-	0	Parent=Os09t0135800-01
Chr09	irgsp1_rep	three_prime_UTR	2703216	2705460	.	-	.	Parent=Os09t0135800-01
Chr09	irgsp1_rep	mRNA	2705199	2707231	.	-	.	ID=Os09t0135800-02;Name=Os09t0135800-02;Locus_id=Os09g0135800;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK108591 (DDBJ%2C Best hit);ORF_evidence=B6TYD9 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=002-146-D03;Expression=AK108591;TENOR=Os09t0135800-02;KEGG=Os09t0135800-02
Chr09	irgsp1_rep	five_prime_UTR	2707213	2707231	.	-	.	Parent=Os09t0135800-02
Chr09	irgsp1_rep	CDS	2705461	2707212	.	-	0	Parent=Os09t0135800-02
Chr09	irgsp1_rep	three_prime_UTR	2705199	2705460	.	-	.	Parent=Os09t0135800-02
Chr09	irgsp1_rep	mRNA	2703296	2707302	.	+	.	ID=Os09t0135850-00;Name=Os09t0135850-00;Locus_id=Os09g0135850;Note=Hypothetical protein.;Transcript_evidence=tplb0050a16 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0135850-00
Chr09	irgsp1_rep	five_prime_UTR	2703296	2703556	.	+	.	Parent=Os09t0135850-00
Chr09	irgsp1_rep	five_prime_UTR	2705443	2705575	.	+	.	Parent=Os09t0135850-00
Chr09	irgsp1_rep	CDS	2705576	2706823	.	+	0	Parent=Os09t0135850-00
Chr09	irgsp1_rep	three_prime_UTR	2706824	2707302	.	+	.	Parent=Os09t0135850-00
Chr09	irgsp1_rep	mRNA	2914721	2920132	.	-	.	ID=Os09t0237600-01;Name=Os09t0237600-01;Locus_id=Os09g0237600;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK112084 (DDBJ%2C Best hit);ORF_evidence=NP_001149977.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-102-A07;Expression=AK112084;TENOR=Os09t0237600-01;KEGG=Os09t0237600-01 (EC:2.7.11.1)
Chr09	irgsp1_rep	five_prime_UTR	2919989	2920132	.	-	.	Parent=Os09t0237600-01
Chr09	irgsp1_rep	CDS	2919739	2919988	.	-	0	Parent=Os09t0237600-01
Chr09	irgsp1_rep	CDS	2917730	2917872	.	-	2	Parent=Os09t0237600-01
Chr09	irgsp1_rep	CDS	2916495	2916638	.	-	0	Parent=Os09t0237600-01
Chr09	irgsp1_rep	CDS	2916134	2916319	.	-	0	Parent=Os09t0237600-01
Chr09	irgsp1_rep	CDS	2915752	2915876	.	-	0	Parent=Os09t0237600-01
Chr09	irgsp1_rep	CDS	2915119	2915347	.	-	1	Parent=Os09t0237600-01
Chr09	irgsp1_rep	three_prime_UTR	2914721	2915118	.	-	.	Parent=Os09t0237600-01
Chr09	irgsp1_rep	mRNA	2923320	2924792	.	-	.	ID=Os09t0237900-01;Name=Os09t0237900-01;Locus_id=Os09g0237900;Note=Non-protein coding transcript.;Transcript_evidence=AK243080 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J100020E01;TENOR=Os09t0237900-01
Chr09	irgsp1_rep	exon	2924516	2924792	.	-	.	Parent=Os09t0237900-01
Chr09	irgsp1_rep	exon	2924263	2924398	.	-	.	Parent=Os09t0237900-01
Chr09	irgsp1_rep	exon	2924069	2924189	.	-	.	Parent=Os09t0237900-01
Chr09	irgsp1_rep	exon	2923320	2923708	.	-	.	Parent=Os09t0237900-01
Chr09	irgsp1_rep	mRNA	2953243	2955899	.	+	.	ID=Os09t0238700-01;Name=Os09t0238700-01;Locus_id=Os09g0238700;Note=Conserved hypothetical protein.;Transcript_evidence=AK289046 (DDBJ%2C Best hit);ORF_evidence=NP_001175726.1 (RefSeq);NIAS_FLcDNA=J090092K15;TENOR=Os09t0238700-01;KEGG=Os09t0238700-01
Chr09	irgsp1_rep	five_prime_UTR	2953243	2954968	.	+	.	Parent=Os09t0238700-01
Chr09	irgsp1_rep	CDS	2954969	2955298	.	+	0	Parent=Os09t0238700-01
Chr09	irgsp1_rep	three_prime_UTR	2955299	2955899	.	+	.	Parent=Os09t0238700-01
Chr09	irgsp1_rep	mRNA	2954764	2956935	.	+	.	ID=Os09t0238700-02;Name=Os09t0238700-02;Locus_id=Os09g0238700;Note=Conserved hypothetical protein.;Transcript_evidence=AK106625 (DDBJ%2C Best hit);ORF_evidence=NP_001174918.1 (RefSeq);NIAS_FLcDNA=002-113-C01;Expression=AK106625;TENOR=Os09t0238700-02;KEGG=Os09t0238700-02
Chr09	irgsp1_rep	five_prime_UTR	2954764	2954968	.	+	.	Parent=Os09t0238700-02
Chr09	irgsp1_rep	CDS	2954969	2955298	.	+	0	Parent=Os09t0238700-02
Chr09	irgsp1_rep	three_prime_UTR	2955299	2955679	.	+	.	Parent=Os09t0238700-02
Chr09	irgsp1_rep	three_prime_UTR	2956419	2956500	.	+	.	Parent=Os09t0238700-02
Chr09	irgsp1_rep	three_prime_UTR	2956599	2956935	.	+	.	Parent=Os09t0238700-02
Chr09	irgsp1_rep	mRNA	3028840	3031142	.	+	.	ID=Os09t0239450-00;Name=Os09t0239450-00;Locus_id=Os09g0239450;Note=Hypothetical gene.;Transcript_evidence=CT841595 (DDBJ%2C Secondary hit);ORF_evidence=Q9SNJ2 (UniProt);TENOR=Os09t0239450-00
Chr09	irgsp1_rep	five_prime_UTR	3028840	3028840	.	+	.	Parent=Os09t0239450-00
Chr09	irgsp1_rep	CDS	3028841	3029074	.	+	0	Parent=Os09t0239450-00
Chr09	irgsp1_rep	three_prime_UTR	3029075	3029434	.	+	.	Parent=Os09t0239450-00
Chr09	irgsp1_rep	three_prime_UTR	3029757	3029839	.	+	.	Parent=Os09t0239450-00
Chr09	irgsp1_rep	three_prime_UTR	3030905	3031142	.	+	.	Parent=Os09t0239450-00
Chr09	irgsp1_rep	mRNA	3048085	3064471	.	-	.	ID=Os09t0240200-01;Name=Os09t0240200-01;Locus_id=Os09g0240200;Oryzabase Gene Symbol Synonym(s)=OsB%2C OsCO3%2C OsBBX27%2C OsCO3/OsB%2C OsCCT31%2C CO3%2C BBX27%2C CCT31;Oryzabase Gene Name Synonym(s)=CONSTANS-like gene B%2C B-box-containing protein 27%2C CCT domain-containing gene 31%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 31%2C CCT domain protein 31;Note=Zinc finger%2C B-box domain containing protein.;Transcript_evidence=AK241570 (DDBJ%2C Best hit);ORF_evidence=Q8LKZ4 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C B-box (IPR000315),CCT domain (IPR010402);NIAS_FLcDNA=J065179J11;Oryzabase=10299;TENOR=Os09t0240200-01;KEGG=Os09t0240200-01
Chr09	irgsp1_rep	five_prime_UTR	3064439	3064471	.	-	.	Parent=Os09t0240200-01
Chr09	irgsp1_rep	CDS	3063815	3064438	.	-	0	Parent=Os09t0240200-01
Chr09	irgsp1_rep	CDS	3048406	3048789	.	-	0	Parent=Os09t0240200-01
Chr09	irgsp1_rep	three_prime_UTR	3048085	3048405	.	-	.	Parent=Os09t0240200-01
Chr09	irgsp1_rep	mRNA	3062376	3063000	.	-	.	ID=Os09t0240350-00;Name=Os09t0240350-00;Locus_id=Os09g0240350;Note=Hypothetical gene.;Transcript_evidence=CT835901 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os09t0240350-00;KEGG=Os09t0240350-00
Chr09	irgsp1_rep	five_prime_UTR	3063000	3063000	.	-	.	Parent=Os09t0240350-00
Chr09	irgsp1_rep	CDS	3062643	3062999	.	-	0	Parent=Os09t0240350-00
Chr09	irgsp1_rep	three_prime_UTR	3062376	3062642	.	-	.	Parent=Os09t0240350-00
Chr09	irgsp1_rep	mRNA	3073972	3092645	.	+	.	ID=Os09t0240500-01;Name=Os09t0240500-01;Locus_id=Os09g0240500;CGSNL Gene Symbol=SULTR4%3B1;CGSNL Gene Name=SULPHATE TRANSPORTER 4%3B1;Oryzabase Gene Symbol Synonym(s)=OsSultr4%3B1%2C OsSul4%3B1%2C OsSultr4%3B1(a)%2C OsSultr4%3B1(b)%2C OsSultr4%3B1(c)%2C OsSultr4%3B1(d);Oryzabase Gene Name Synonym(s)=sulphate transporter 4%3B1;Note=Similar to Sulfate transporter 4.1%2C chloroplast precursor (AST82).;Transcript_evidence=AK067676 (DDBJ%2C Best hit),AK069796 (DDBJ%2C Best hit);ORF_evidence=B6SXI4 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: sulfate transport (GO:0008272),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: secondary active sulfate transmembrane transporter activity (GO:0008271);InterPro=Sulphate anion transporter (IPR001902),Sulphate transporter/antisigma-factor antagonist STAS (IPR002645),Sulphate transporter (IPR011547),Sulphate anion transporter%2C conserved site (IPR018045);NIAS_FLcDNA=J013116F03,J023028K03;Oryzabase=9326;Expression=AK067676;TENOR=Os09t0240500-01;KEGG=Os09t0240500-01
Chr09	irgsp1_rep	five_prime_UTR	3073972	3074131	.	+	.	Parent=Os09t0240500-01
Chr09	irgsp1_rep	five_prime_UTR	3074213	3074230	.	+	.	Parent=Os09t0240500-01
Chr09	irgsp1_rep	CDS	3074231	3074518	.	+	0	Parent=Os09t0240500-01
Chr09	irgsp1_rep	CDS	3075476	3075524	.	+	0	Parent=Os09t0240500-01
Chr09	irgsp1_rep	CDS	3075624	3075825	.	+	2	Parent=Os09t0240500-01
Chr09	irgsp1_rep	CDS	3077552	3077720	.	+	1	Parent=Os09t0240500-01
Chr09	irgsp1_rep	CDS	3077930	3077995	.	+	0	Parent=Os09t0240500-01
Chr09	irgsp1_rep	CDS	3078118	3078225	.	+	0	Parent=Os09t0240500-01
Chr09	irgsp1_rep	CDS	3079315	3079422	.	+	0	Parent=Os09t0240500-01
Chr09	irgsp1_rep	CDS	3079501	3079566	.	+	0	Parent=Os09t0240500-01
Chr09	irgsp1_rep	CDS	3083592	3083652	.	+	0	Parent=Os09t0240500-01
Chr09	irgsp1_rep	CDS	3083780	3083907	.	+	2	Parent=Os09t0240500-01
Chr09	irgsp1_rep	CDS	3084904	3084945	.	+	0	Parent=Os09t0240500-01
Chr09	irgsp1_rep	CDS	3085262	3085378	.	+	0	Parent=Os09t0240500-01
Chr09	irgsp1_rep	CDS	3085468	3085519	.	+	0	Parent=Os09t0240500-01
Chr09	irgsp1_rep	CDS	3091543	3091681	.	+	2	Parent=Os09t0240500-01
Chr09	irgsp1_rep	CDS	3091781	3091866	.	+	1	Parent=Os09t0240500-01
Chr09	irgsp1_rep	CDS	3092019	3092095	.	+	2	Parent=Os09t0240500-01
Chr09	irgsp1_rep	CDS	3092192	3092503	.	+	0	Parent=Os09t0240500-01
Chr09	irgsp1_rep	three_prime_UTR	3092504	3092645	.	+	.	Parent=Os09t0240500-01
Chr09	irgsp1_rep	mRNA	3073972	3075972	.	+	.	ID=Os09t0240500-02;Name=Os09t0240500-02;Locus_id=Os09g0240500;CGSNL Gene Symbol=SULTR4%3B1;CGSNL Gene Name=SULPHATE TRANSPORTER 4%3B1;Oryzabase Gene Symbol Synonym(s)=OsSultr4%3B1%2C OsSul4%3B1%2C OsSultr4%3B1(a)%2C OsSultr4%3B1(b)%2C OsSultr4%3B1(c)%2C OsSultr4%3B1(d);Oryzabase Gene Name Synonym(s)=sulphate transporter 4%3B1;Note=Similar to Sulfate transporter 4.1.;Transcript_evidence=AK062451 (DDBJ%2C Best hit);ORF_evidence=B6SXI4 (UniProt);GO=Biological Process: sulfate transport (GO:0008272),Cellular Component: membrane (GO:0016020),Molecular Function: secondary active sulfate transmembrane transporter activity (GO:0008271);InterPro=Sulphate anion transporter%2C conserved site (IPR018045);NIAS_FLcDNA=001-103-C04;Oryzabase=9326;Expression=AK062451;TENOR=Os09t0240500-02;KEGG=Os09t0240500-02
Chr09	irgsp1_rep	five_prime_UTR	3073972	3074131	.	+	.	Parent=Os09t0240500-02
Chr09	irgsp1_rep	five_prime_UTR	3074213	3074230	.	+	.	Parent=Os09t0240500-02
Chr09	irgsp1_rep	CDS	3074231	3074518	.	+	0	Parent=Os09t0240500-02
Chr09	irgsp1_rep	CDS	3075476	3075524	.	+	0	Parent=Os09t0240500-02
Chr09	irgsp1_rep	CDS	3075624	3075829	.	+	2	Parent=Os09t0240500-02
Chr09	irgsp1_rep	three_prime_UTR	3075830	3075972	.	+	.	Parent=Os09t0240500-02
Chr09	irgsp1_rep	mRNA	3088350	3092832	.	+	.	ID=Os09t0240500-03;Name=Os09t0240500-03;Locus_id=Os09g0240500;CGSNL Gene Symbol=SULTR4%3B1;CGSNL Gene Name=SULPHATE TRANSPORTER 4%3B1;Oryzabase Gene Symbol Synonym(s)=OsSultr4%3B1%2C OsSul4%3B1%2C OsSultr4%3B1(a)%2C OsSultr4%3B1(b)%2C OsSultr4%3B1(c)%2C OsSultr4%3B1(d);Oryzabase Gene Name Synonym(s)=sulphate transporter 4%3B1;Note=Similar to Sulfate transporter 4.1.;Transcript_evidence=AK287664 (DDBJ%2C Best hit);ORF_evidence=B6SXI4 (UniProt);InterPro=Sulphate transporter/antisigma-factor antagonist STAS (IPR002645);NIAS_FLcDNA=J065114D10;Oryzabase=9326;TENOR=Os09t0240500-03;KEGG=Os09t0240500-03
Chr09	irgsp1_rep	five_prime_UTR	3088350	3091499	.	+	.	Parent=Os09t0240500-03
Chr09	irgsp1_rep	CDS	3091500	3091681	.	+	0	Parent=Os09t0240500-03
Chr09	irgsp1_rep	CDS	3091781	3091898	.	+	1	Parent=Os09t0240500-03
Chr09	irgsp1_rep	three_prime_UTR	3091899	3092095	.	+	.	Parent=Os09t0240500-03
Chr09	irgsp1_rep	three_prime_UTR	3092192	3092832	.	+	.	Parent=Os09t0240500-03
Chr09	irgsp1_rep	mRNA	3091628	3092832	.	+	.	ID=Os09t0240500-04;Name=Os09t0240500-04;Locus_id=Os09g0240500;CGSNL Gene Symbol=SULTR4%3B1;CGSNL Gene Name=SULPHATE TRANSPORTER 4%3B1;Oryzabase Gene Symbol Synonym(s)=OsSultr4%3B1%2C OsSul4%3B1%2C OsSultr4%3B1(a)%2C OsSultr4%3B1(b)%2C OsSultr4%3B1(c)%2C OsSultr4%3B1(d);Oryzabase Gene Name Synonym(s)=sulphate transporter 4%3B1;Note=Similar to Sulfate transporter 4.1.;Transcript_evidence=AK062192 (DDBJ%2C Best hit);ORF_evidence=B6SXI4 (UniProt);InterPro=Sulphate transporter/antisigma-factor antagonist STAS (IPR002645);NIAS_FLcDNA=001-046-F01;Oryzabase=9326;Expression=AK062192;TENOR=Os09t0240500-04;KEGG=Os09t0240500-04
Chr09	irgsp1_rep	five_prime_UTR	3091628	3091628	.	+	.	Parent=Os09t0240500-04
Chr09	irgsp1_rep	CDS	3091629	3091681	.	+	0	Parent=Os09t0240500-04
Chr09	irgsp1_rep	CDS	3091781	3091866	.	+	1	Parent=Os09t0240500-04
Chr09	irgsp1_rep	CDS	3092019	3092095	.	+	2	Parent=Os09t0240500-04
Chr09	irgsp1_rep	CDS	3092192	3092503	.	+	0	Parent=Os09t0240500-04
Chr09	irgsp1_rep	three_prime_UTR	3092504	3092832	.	+	.	Parent=Os09t0240500-04
Chr09	irgsp1_rep	mRNA	3101605	3106242	.	+	.	ID=Os09t0240850-01;Name=Os09t0240850-01;Locus_id=Os09g0240850;Note=Hypothetical conserved gene.;Transcript_evidence=AK289029 (DDBJ%2C Best hit);ORF_evidence=A2XSM9 (UniProt);NIAS_FLcDNA=J090090O22;TENOR=Os09t0240850-01;KEGG=Os09t0240850-01
Chr09	irgsp1_rep	five_prime_UTR	3101605	3105018	.	+	.	Parent=Os09t0240850-01
Chr09	irgsp1_rep	CDS	3105019	3105495	.	+	0	Parent=Os09t0240850-01
Chr09	irgsp1_rep	three_prime_UTR	3105496	3106242	.	+	.	Parent=Os09t0240850-01
Chr09	irgsp1_rep	mRNA	3118920	3124226	.	-	.	ID=Os09t0240975-01;Name=Os09t0240975-01;Locus_id=Os09g0240975;Note=Hypothetical gene.;Transcript_evidence=AK099930 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013118L18;Expression=AK099930;TENOR=Os09t0240975-01;KEGG=Os09t0240975-01
Chr09	irgsp1_rep	five_prime_UTR	3124103	3124226	.	-	.	Parent=Os09t0240975-01
Chr09	irgsp1_rep	five_prime_UTR	3123893	3124019	.	-	.	Parent=Os09t0240975-01
Chr09	irgsp1_rep	five_prime_UTR	3123703	3123819	.	-	.	Parent=Os09t0240975-01
Chr09	irgsp1_rep	five_prime_UTR	3123465	3123570	.	-	.	Parent=Os09t0240975-01
Chr09	irgsp1_rep	five_prime_UTR	3123336	3123391	.	-	.	Parent=Os09t0240975-01
Chr09	irgsp1_rep	five_prime_UTR	3123118	3123252	.	-	.	Parent=Os09t0240975-01
Chr09	irgsp1_rep	five_prime_UTR	3122802	3122906	.	-	.	Parent=Os09t0240975-01
Chr09	irgsp1_rep	five_prime_UTR	3121723	3121836	.	-	.	Parent=Os09t0240975-01
Chr09	irgsp1_rep	five_prime_UTR	3121449	3121625	.	-	.	Parent=Os09t0240975-01
Chr09	irgsp1_rep	five_prime_UTR	3120888	3121350	.	-	.	Parent=Os09t0240975-01
Chr09	irgsp1_rep	CDS	3120435	3120887	.	-	0	Parent=Os09t0240975-01
Chr09	irgsp1_rep	three_prime_UTR	3120236	3120434	.	-	.	Parent=Os09t0240975-01
Chr09	irgsp1_rep	three_prime_UTR	3118920	3120141	.	-	.	Parent=Os09t0240975-01
Chr09	irgsp1_rep	mRNA	3120345	3125131	.	+	.	ID=Os09t0241100-01;Name=Os09t0241100-01;Locus_id=Os09g0241100;Oryzabase Gene Symbol Synonym(s)=OsWD40-166;Note=Similar to nucleotide binding.;Transcript_evidence=AK109602 (DDBJ%2C Best hit);ORF_evidence=NP_189852.2 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),Protein of unknown function DUF3639 (IPR022100);NIAS_FLcDNA=002-137-E09;Oryzabase=10847;Expression=AK109602;TENOR=Os09t0241100-01;KEGG=Os09t0241100-01
Chr09	irgsp1_rep	five_prime_UTR	3120345	3120345	.	+	.	Parent=Os09t0241100-01
Chr09	irgsp1_rep	CDS	3120346	3121350	.	+	0	Parent=Os09t0241100-01
Chr09	irgsp1_rep	CDS	3121449	3121625	.	+	0	Parent=Os09t0241100-01
Chr09	irgsp1_rep	CDS	3121723	3121836	.	+	0	Parent=Os09t0241100-01
Chr09	irgsp1_rep	CDS	3122802	3122906	.	+	0	Parent=Os09t0241100-01
Chr09	irgsp1_rep	CDS	3123118	3123252	.	+	0	Parent=Os09t0241100-01
Chr09	irgsp1_rep	CDS	3123336	3123391	.	+	0	Parent=Os09t0241100-01
Chr09	irgsp1_rep	CDS	3123465	3123570	.	+	1	Parent=Os09t0241100-01
Chr09	irgsp1_rep	CDS	3123703	3123819	.	+	0	Parent=Os09t0241100-01
Chr09	irgsp1_rep	CDS	3123893	3124019	.	+	0	Parent=Os09t0241100-01
Chr09	irgsp1_rep	CDS	3124103	3124233	.	+	2	Parent=Os09t0241100-01
Chr09	irgsp1_rep	CDS	3124352	3124915	.	+	0	Parent=Os09t0241100-01
Chr09	irgsp1_rep	three_prime_UTR	3124916	3125131	.	+	.	Parent=Os09t0241100-01
Chr09	irgsp1_rep	mRNA	3126678	3127160	.	-	.	ID=Os09t0241200-01;Name=Os09t0241200-01;Locus_id=Os09g0241200;Note=Hypothetical protein.;Transcript_evidence=AK120155 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013030A17;TENOR=Os09t0241200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	3126807	3127160	.	-	0	Parent=Os09t0241200-01
Chr09	irgsp1_rep	three_prime_UTR	3126678	3126806	.	-	.	Parent=Os09t0241200-01
Chr09	irgsp1_rep	mRNA	3138970	3140353	.	+	.	ID=Os09t0241550-00;Name=Os09t0241550-00;Locus_id=Os09g0241550;Oryzabase Gene Symbol Synonym(s)=OsFbox467%2C Os_F0397;Oryzabase Gene Name Synonym(s)=F-box protein 467;Note=Similar to F-box domain containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=D8L9K3 (UniProt);Oryzabase=17237;TENOR=Os09t0241550-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	3138970	3139027	.	+	0	Parent=Os09t0241550-00
Chr09	irgsp1_rep	CDS	3139431	3140353	.	+	2	Parent=Os09t0241550-00
Chr09	irgsp1_rep	mRNA	3141918	3147413	.	+	.	ID=Os09t0241700-01;Name=Os09t0241700-01;Locus_id=Os09g0241700;Note=Homeodomain-like containing protein.;Transcript_evidence=AK065944 (DDBJ%2C Best hit);ORF_evidence=Q5W653 (UniProt);NIAS_FLcDNA=J013047G08;Expression=AK065944;TENOR=Os09t0241700-01;KEGG=Os09t0241700-01
Chr09	irgsp1_rep	five_prime_UTR	3141918	3143623	.	+	.	Parent=Os09t0241700-01
Chr09	irgsp1_rep	CDS	3143624	3143815	.	+	0	Parent=Os09t0241700-01
Chr09	irgsp1_rep	CDS	3143908	3144663	.	+	0	Parent=Os09t0241700-01
Chr09	irgsp1_rep	three_prime_UTR	3144664	3144664	.	+	.	Parent=Os09t0241700-01
Chr09	irgsp1_rep	three_prime_UTR	3145341	3146586	.	+	.	Parent=Os09t0241700-01
Chr09	irgsp1_rep	three_prime_UTR	3146669	3146712	.	+	.	Parent=Os09t0241700-01
Chr09	irgsp1_rep	three_prime_UTR	3147120	3147413	.	+	.	Parent=Os09t0241700-01
Chr09	irgsp1_rep	mRNA	3164281	3164508	.	+	.	ID=Os09t0242000-00;Name=Os09t0242000-00;Locus_id=Os09g0242000;Oryzabase Gene Symbol Synonym(s)=Os_F0709;Note=Similar to F-box domain containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=D8L9K3 (UniProt);Oryzabase=17528;TENOR=Os09t0242000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	3164281	3164508	.	+	0	Parent=Os09t0242000-00
Chr09	irgsp1_rep	mRNA	3168391	3171203	.	+	.	ID=Os09t0242300-00;Name=Os09t0242300-00;Locus_id=Os09g0242300;Oryzabase Gene Symbol Synonym(s)=OsWD40-167;Note=Similar to cell division cycle protein 20.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001151581.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);Oryzabase=10848;TENOR=Os09t0242300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	3168391	3168543	.	+	0	Parent=Os09t0242300-00
Chr09	irgsp1_rep	CDS	3169660	3169938	.	+	0	Parent=Os09t0242300-00
Chr09	irgsp1_rep	CDS	3170023	3170292	.	+	0	Parent=Os09t0242300-00
Chr09	irgsp1_rep	CDS	3170381	3170971	.	+	0	Parent=Os09t0242300-00
Chr09	irgsp1_rep	CDS	3171060	3171203	.	+	0	Parent=Os09t0242300-00
Chr09	irgsp1_rep	mRNA	3196606	3197528	.	-	.	ID=Os09t0242600-01;Name=Os09t0242600-01;Locus_id=Os09g0242600;Note=Hypothetical protein.;Transcript_evidence=AK072475 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023124E17;Expression=AK072475;TENOR=Os09t0242600-01;KEGG=Os09t0242600-01
Chr09	irgsp1_rep	five_prime_UTR	3197489	3197528	.	-	.	Parent=Os09t0242600-01
Chr09	irgsp1_rep	CDS	3197048	3197488	.	-	0	Parent=Os09t0242600-01
Chr09	irgsp1_rep	three_prime_UTR	3196606	3197047	.	-	.	Parent=Os09t0242600-01
Chr09	irgsp1_rep	mRNA	3205935	3206883	.	+	.	ID=Os09t0242800-01;Name=Os09t0242800-01;Locus_id=Os09g0242800;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK061263 (DDBJ%2C Best hit);ORF_evidence=NP_001147340.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=006-212-C03;Expression=AK061263;TENOR=Os09t0242800-01;KEGG=Os09t0242800-01 (EC:6.3.2.19)
Chr09	irgsp1_rep	five_prime_UTR	3205935	3206037	.	+	.	Parent=Os09t0242800-01
Chr09	irgsp1_rep	CDS	3206038	3206529	.	+	0	Parent=Os09t0242800-01
Chr09	irgsp1_rep	three_prime_UTR	3206530	3206883	.	+	.	Parent=Os09t0242800-01
Chr09	irgsp1_rep	mRNA	3208827	3209057	.	-	.	ID=Os09t0243000-00;Name=Os09t0243000-00;Locus_id=Os09g0243000;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G294 (UniProt);TENOR=Os09t0243000-00
Chr09	irgsp1_rep	CDS	3208827	3209057	.	-	0	Parent=Os09t0243000-00
Chr09	irgsp1_rep	mRNA	3236285	3236983	.	+	.	ID=Os09t0243200-01;Name=Os09t0243200-01;Locus_id=Os09g0243200;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK107718 (DDBJ%2C Best hit);ORF_evidence=A2YYT7 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=002-132-E06;Expression=AK107718;TENOR=Os09t0243200-01;KEGG=Os09t0243200-01
Chr09	irgsp1_rep	five_prime_UTR	3236285	3236338	.	+	.	Parent=Os09t0243200-01
Chr09	irgsp1_rep	CDS	3236339	3236806	.	+	0	Parent=Os09t0243200-01
Chr09	irgsp1_rep	three_prime_UTR	3236807	3236983	.	+	.	Parent=Os09t0243200-01
Chr09	irgsp1_rep	mRNA	3279679	3282235	.	-	.	ID=Os09t0243450-01;Name=Os09t0243450-01;Locus_id=Os09g0243450;Note=Similar to Transposon mutator sub-class.;Transcript_evidence=AK288493 (DDBJ%2C Best hit);ORF_evidence=C5NNP3 (UniProt);NIAS_FLcDNA=J090040L15;TENOR=Os09t0243450-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	3282235	3282235	.	-	.	Parent=Os09t0243450-01
Chr09	irgsp1_rep	CDS	3282085	3282234	.	-	0	Parent=Os09t0243450-01
Chr09	irgsp1_rep	three_prime_UTR	3279679	3282084	.	-	.	Parent=Os09t0243450-01
Chr09	irgsp1_rep	mRNA	3342606	3348670	.	-	.	ID=Os09t0244200-01;Name=Os09t0244200-01;Locus_id=Os09g0244200;Oryzabase Gene Name Synonym(s)=Conserved hypothetical protein;Note=Similar to Metallothionein type 1.;Transcript_evidence=AK065536 (DDBJ%2C Best hit);ORF_evidence=B2ZSV7 (UniProt);NIAS_FLcDNA=J013028P07;Oryzabase=22024;TENOR=Os09t0244200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	3347978	3348670	.	-	.	Parent=Os09t0244200-01
Chr09	irgsp1_rep	five_prime_UTR	3347841	3347906	.	-	.	Parent=Os09t0244200-01
Chr09	irgsp1_rep	five_prime_UTR	3347665	3347765	.	-	.	Parent=Os09t0244200-01
Chr09	irgsp1_rep	five_prime_UTR	3347469	3347538	.	-	.	Parent=Os09t0244200-01
Chr09	irgsp1_rep	five_prime_UTR	3347332	3347384	.	-	.	Parent=Os09t0244200-01
Chr09	irgsp1_rep	five_prime_UTR	3346708	3346770	.	-	.	Parent=Os09t0244200-01
Chr09	irgsp1_rep	five_prime_UTR	3346212	3346272	.	-	.	Parent=Os09t0244200-01
Chr09	irgsp1_rep	five_prime_UTR	3344794	3344924	.	-	.	Parent=Os09t0244200-01
Chr09	irgsp1_rep	five_prime_UTR	3344616	3344692	.	-	.	Parent=Os09t0244200-01
Chr09	irgsp1_rep	five_prime_UTR	3344233	3344308	.	-	.	Parent=Os09t0244200-01
Chr09	irgsp1_rep	five_prime_UTR	3344057	3344071	.	-	.	Parent=Os09t0244200-01
Chr09	irgsp1_rep	CDS	3343903	3344056	.	-	0	Parent=Os09t0244200-01
Chr09	irgsp1_rep	CDS	3343573	3343658	.	-	2	Parent=Os09t0244200-01
Chr09	irgsp1_rep	three_prime_UTR	3343543	3343572	.	-	.	Parent=Os09t0244200-01
Chr09	irgsp1_rep	three_prime_UTR	3342606	3342874	.	-	.	Parent=Os09t0244200-01
Chr09	irgsp1_rep	mRNA	3345558	3348774	.	+	.	ID=Os09t0244400-01;Name=Os09t0244400-01;Locus_id=Os09g0244400;Note=Hypothetical conserved gene.;Transcript_evidence=AK288292 (DDBJ%2C Best hit);ORF_evidence=A3BWD4 (UniProt);NIAS_FLcDNA=J090019E22;TENOR=Os09t0244400-01;KEGG=Os09t0244400-01
Chr09	irgsp1_rep	five_prime_UTR	3345558	3348091	.	+	.	Parent=Os09t0244400-01
Chr09	irgsp1_rep	CDS	3348092	3348772	.	+	0	Parent=Os09t0244400-01
Chr09	irgsp1_rep	three_prime_UTR	3348773	3348774	.	+	.	Parent=Os09t0244400-01
Chr09	irgsp1_rep	mRNA	3355810	3356603	.	+	.	ID=Os09t0244600-01;Name=Os09t0244600-01;Locus_id=Os09g0244600;Note=Conserved hypothetical protein.;Transcript_evidence=AK108228 (DDBJ%2C Best hit);ORF_evidence=Q6H446 (UniProt);NIAS_FLcDNA=002-140-F09;TENOR=Os09t0244600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	3355810	3356358	.	+	0	Parent=Os09t0244600-01
Chr09	irgsp1_rep	three_prime_UTR	3356359	3356603	.	+	.	Parent=Os09t0244600-01
Chr09	irgsp1_rep	mRNA	3369519	3375858	.	+	.	ID=Os09t0244900-01;Name=Os09t0244900-01;Locus_id=Os09g0244900;Note=Transport protein particle (TRAPP) component domain containing protein.;Transcript_evidence=AK099703 (DDBJ%2C Best hit);ORF_evidence=NP_001152926.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Transport protein particle (TRAPP) component (IPR007194),NO signalling/Golgi transport  ligand-binding domain (IPR024096);NIAS_FLcDNA=J013075G21;Expression=AK099703;TENOR=Os09t0244900-01;KEGG=Os09t0244900-01
Chr09	irgsp1_rep	five_prime_UTR	3369519	3369676	.	+	.	Parent=Os09t0244900-01
Chr09	irgsp1_rep	CDS	3369677	3369828	.	+	0	Parent=Os09t0244900-01
Chr09	irgsp1_rep	CDS	3373187	3373304	.	+	1	Parent=Os09t0244900-01
Chr09	irgsp1_rep	CDS	3373379	3373607	.	+	0	Parent=Os09t0244900-01
Chr09	irgsp1_rep	CDS	3375538	3375566	.	+	2	Parent=Os09t0244900-01
Chr09	irgsp1_rep	three_prime_UTR	3375567	3375858	.	+	.	Parent=Os09t0244900-01
Chr09	irgsp1_rep	mRNA	3369563	3375858	.	+	.	ID=Os09t0244900-02;Name=Os09t0244900-02;Locus_id=Os09g0244900;Note=Transport protein particle (TRAPP) component domain containing protein.;Transcript_evidence=AK061918 (DDBJ%2C Best hit);ORF_evidence=NP_001152926.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Transport protein particle (TRAPP) component (IPR007194),NO signalling/Golgi transport  ligand-binding domain (IPR024096);NIAS_FLcDNA=001-042-B03;Expression=AK061918;TENOR=Os09t0244900-02;KEGG=Os09t0244900-02
Chr09	irgsp1_rep	five_prime_UTR	3369563	3369676	.	+	.	Parent=Os09t0244900-02
Chr09	irgsp1_rep	CDS	3369677	3369828	.	+	0	Parent=Os09t0244900-02
Chr09	irgsp1_rep	CDS	3373187	3373304	.	+	1	Parent=Os09t0244900-02
Chr09	irgsp1_rep	CDS	3373379	3373607	.	+	0	Parent=Os09t0244900-02
Chr09	irgsp1_rep	CDS	3375538	3375566	.	+	2	Parent=Os09t0244900-02
Chr09	irgsp1_rep	three_prime_UTR	3375567	3375858	.	+	.	Parent=Os09t0244900-02
Chr09	irgsp1_rep	mRNA	3369564	3375886	.	+	.	ID=Os09t0244900-03;Name=Os09t0244900-03;Locus_id=Os09g0244900;Note=Transport protein particle (TRAPP) component domain containing protein.;Transcript_evidence=AK099663 (DDBJ%2C Best hit),AK099662 (DDBJ%2C Best hit);ORF_evidence=NP_001152926.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Transport protein particle (TRAPP) component (IPR007194),NO signalling/Golgi transport  ligand-binding domain (IPR024096);NIAS_FLcDNA=J013066O10,J013066M10;Expression=AK099663;TENOR=Os09t0244900-03;KEGG=Os09t0244900-03
Chr09	irgsp1_rep	five_prime_UTR	3369564	3369676	.	+	.	Parent=Os09t0244900-03
Chr09	irgsp1_rep	CDS	3369677	3369828	.	+	0	Parent=Os09t0244900-03
Chr09	irgsp1_rep	CDS	3373187	3373304	.	+	1	Parent=Os09t0244900-03
Chr09	irgsp1_rep	CDS	3373379	3373633	.	+	0	Parent=Os09t0244900-03
Chr09	irgsp1_rep	three_prime_UTR	3373634	3375886	.	+	.	Parent=Os09t0244900-03
Chr09	irgsp1_rep	mRNA	3369636	3376004	.	+	.	ID=Os09t0244900-04;Name=Os09t0244900-04;Locus_id=Os09g0244900;Note=Transport protein particle (TRAPP) component domain containing protein.;Transcript_evidence=AK072551 (DDBJ%2C Best hit);ORF_evidence=NP_001152926.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Transport protein particle (TRAPP) component (IPR007194),NO signalling/Golgi transport  ligand-binding domain (IPR024096);NIAS_FLcDNA=J023131N19;Expression=AK072551;TENOR=Os09t0244900-04;KEGG=Os09t0244900-04
Chr09	irgsp1_rep	five_prime_UTR	3369636	3369676	.	+	.	Parent=Os09t0244900-04
Chr09	irgsp1_rep	CDS	3369677	3369828	.	+	0	Parent=Os09t0244900-04
Chr09	irgsp1_rep	CDS	3373187	3373304	.	+	1	Parent=Os09t0244900-04
Chr09	irgsp1_rep	CDS	3373379	3373607	.	+	0	Parent=Os09t0244900-04
Chr09	irgsp1_rep	CDS	3375538	3375566	.	+	2	Parent=Os09t0244900-04
Chr09	irgsp1_rep	three_prime_UTR	3375567	3376004	.	+	.	Parent=Os09t0244900-04
Chr09	irgsp1_rep	mRNA	3404388	3407886	.	-	.	ID=Os09t0245500-01;Name=Os09t0245500-01;Locus_id=Os09g0245500;CGSNL Gene Symbol=2ODD33;CGSNL Gene Name=2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 33;Oryzabase Gene Symbol Synonym(s)=2-ODD33%2C Os2-ODD33%2C Os2ODD33;Oryzabase Gene Name Synonym(s)=2-oxoglutarate-dependent dioxygenase 33;Note=Isopenicillin N synthase domain containing protein.;Transcript_evidence=AK067016 (DDBJ%2C Best hit),AK101447 (DDBJ%2C Best hit),AK104787 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Isopenicillin N synthase (IPR002283),Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=J013092B16,J033039L18,001-039-E01;Oryzabase=22632;Expression=AK067016;TENOR=Os09t0245500-01;KEGG=Os09t0245500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	3407697	3407886	.	-	0	Parent=Os09t0245500-01
Chr09	irgsp1_rep	CDS	3407340	3407455	.	-	2	Parent=Os09t0245500-01
Chr09	irgsp1_rep	CDS	3407095	3407213	.	-	0	Parent=Os09t0245500-01
Chr09	irgsp1_rep	CDS	3406911	3406974	.	-	1	Parent=Os09t0245500-01
Chr09	irgsp1_rep	CDS	3406760	3406827	.	-	0	Parent=Os09t0245500-01
Chr09	irgsp1_rep	CDS	3406207	3406265	.	-	1	Parent=Os09t0245500-01
Chr09	irgsp1_rep	CDS	3405938	3406097	.	-	2	Parent=Os09t0245500-01
Chr09	irgsp1_rep	CDS	3405798	3405817	.	-	1	Parent=Os09t0245500-01
Chr09	irgsp1_rep	CDS	3405565	3405611	.	-	2	Parent=Os09t0245500-01
Chr09	irgsp1_rep	CDS	3404920	3405000	.	-	0	Parent=Os09t0245500-01
Chr09	irgsp1_rep	CDS	3404748	3404837	.	-	0	Parent=Os09t0245500-01
Chr09	irgsp1_rep	CDS	3404520	3404648	.	-	0	Parent=Os09t0245500-01
Chr09	irgsp1_rep	three_prime_UTR	3404388	3404519	.	-	.	Parent=Os09t0245500-01
Chr09	irgsp1_rep	mRNA	3456032	3467798	.	-	.	ID=Os09t0246200-01;Name=Os09t0246200-01;Locus_id=Os09g0246200;CGSNL Gene Symbol=RPOTM;CGSNL Gene Name=RNA POLYMERASE SUBUNIT TM;Oryzabase Gene Symbol Synonym(s)=OsRpoTm;Oryzabase Gene Name Synonym(s)=Nuclear-Encoded Mitochondrial RNA Polymerase;Note=Similar to DNA-directed RNA polymerase.;Transcript_evidence=AK066809 (DDBJ%2C Best hit);ORF_evidence=Q84LK6 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899);InterPro=DNA-directed RNA polymerase%2C phage-type (IPR002092),DNA-directed RNA polymerase%2C helix hairpin domain (IPR024075);NIAS_FLcDNA=J013088P06;Oryzabase=9714;Expression=AK066809;TENOR=Os09t0246200-01;KEGG=Os09t0246200-01 (EC:2.7.7.6)
Chr09	irgsp1_rep	five_prime_UTR	3467709	3467798	.	-	.	Parent=Os09t0246200-01
Chr09	irgsp1_rep	CDS	3466815	3467708	.	-	0	Parent=Os09t0246200-01
Chr09	irgsp1_rep	CDS	3465674	3465889	.	-	0	Parent=Os09t0246200-01
Chr09	irgsp1_rep	CDS	3465452	3465585	.	-	0	Parent=Os09t0246200-01
Chr09	irgsp1_rep	CDS	3465301	3465367	.	-	1	Parent=Os09t0246200-01
Chr09	irgsp1_rep	CDS	3465144	3465202	.	-	0	Parent=Os09t0246200-01
Chr09	irgsp1_rep	CDS	3464780	3464897	.	-	1	Parent=Os09t0246200-01
Chr09	irgsp1_rep	CDS	3463967	3464080	.	-	0	Parent=Os09t0246200-01
Chr09	irgsp1_rep	CDS	3463717	3463848	.	-	0	Parent=Os09t0246200-01
Chr09	irgsp1_rep	CDS	3463225	3463641	.	-	0	Parent=Os09t0246200-01
Chr09	irgsp1_rep	CDS	3462431	3462481	.	-	0	Parent=Os09t0246200-01
Chr09	irgsp1_rep	CDS	3462239	3462309	.	-	0	Parent=Os09t0246200-01
Chr09	irgsp1_rep	CDS	3459883	3459967	.	-	1	Parent=Os09t0246200-01
Chr09	irgsp1_rep	CDS	3459189	3459341	.	-	0	Parent=Os09t0246200-01
Chr09	irgsp1_rep	CDS	3459007	3459081	.	-	0	Parent=Os09t0246200-01
Chr09	irgsp1_rep	CDS	3458707	3458796	.	-	0	Parent=Os09t0246200-01
Chr09	irgsp1_rep	CDS	3458532	3458579	.	-	0	Parent=Os09t0246200-01
Chr09	irgsp1_rep	CDS	3457636	3457750	.	-	0	Parent=Os09t0246200-01
Chr09	irgsp1_rep	CDS	3456706	3456722	.	-	2	Parent=Os09t0246200-01
Chr09	irgsp1_rep	three_prime_UTR	3456032	3456705	.	-	.	Parent=Os09t0246200-01
Chr09	irgsp1_rep	mRNA	3459269	3464862	.	-	.	ID=Os09t0246200-02;Name=Os09t0246200-02;Locus_id=Os09g0246200;CGSNL Gene Symbol=RPOTM;CGSNL Gene Name=RNA POLYMERASE SUBUNIT TM;Oryzabase Gene Symbol Synonym(s)=OsRpoTm;Oryzabase Gene Name Synonym(s)=Nuclear-Encoded Mitochondrial RNA Polymerase;Note=Similar to DNA-directed RNA polymerase.;Transcript_evidence=AK059162 (DDBJ%2C Best hit);ORF_evidence=Q84LK6 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899);InterPro=DNA-directed RNA polymerase%2C phage-type (IPR002092),DNA-directed RNA polymerase%2C helix hairpin domain (IPR024075);NIAS_FLcDNA=001-023-D08;Oryzabase=9714;TENOR=Os09t0246200-02
Chr09	irgsp1_rep	five_prime_UTR	3464861	3464862	.	-	.	Parent=Os09t0246200-02
Chr09	irgsp1_rep	CDS	3464780	3464860	.	-	0	Parent=Os09t0246200-02
Chr09	irgsp1_rep	CDS	3463967	3464080	.	-	0	Parent=Os09t0246200-02
Chr09	irgsp1_rep	CDS	3463717	3463848	.	-	0	Parent=Os09t0246200-02
Chr09	irgsp1_rep	CDS	3463225	3463641	.	-	0	Parent=Os09t0246200-02
Chr09	irgsp1_rep	CDS	3462431	3462481	.	-	0	Parent=Os09t0246200-02
Chr09	irgsp1_rep	CDS	3462239	3462309	.	-	0	Parent=Os09t0246200-02
Chr09	irgsp1_rep	CDS	3459883	3459967	.	-	1	Parent=Os09t0246200-02
Chr09	irgsp1_rep	CDS	3459269	3459341	.	-	0	Parent=Os09t0246200-02
Chr09	irgsp1_rep	mRNA	3475143	3475827	.	+	.	ID=Os09t0246250-00;Name=Os09t0246250-00;Locus_id=Os09g0246250;Note=Histidine triad (HIT) protein domain containing protein.;Transcript_evidence=AK369413 (DDBJ);ORF_evidence=B4FU92 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Histidine triad (HIT) protein (IPR001310),Histidine triad-like motif (IPR011146),Histidine triad motif (IPR011151);TENOR=Os09t0246250-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	3475143	3475200	.	+	.	Parent=Os09t0246250-00
Chr09	irgsp1_rep	CDS	3475201	3475287	.	+	0	Parent=Os09t0246250-00
Chr09	irgsp1_rep	CDS	3475557	3475654	.	+	0	Parent=Os09t0246250-00
Chr09	irgsp1_rep	CDS	3475735	3475759	.	+	1	Parent=Os09t0246250-00
Chr09	irgsp1_rep	three_prime_UTR	3475760	3475827	.	+	.	Parent=Os09t0246250-00
Chr09	irgsp1_rep	mRNA	3480171	3496480	.	-	.	ID=Os09t0246300-01;Name=Os09t0246300-01;Locus_id=Os09g0246300;Note=Hypothetical protein.;Transcript_evidence=AK120671 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013160F22;TENOR=Os09t0246300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	3496480	3496480	.	-	.	Parent=Os09t0246300-01
Chr09	irgsp1_rep	CDS	3496229	3496479	.	-	0	Parent=Os09t0246300-01
Chr09	irgsp1_rep	CDS	3495211	3495229	.	-	1	Parent=Os09t0246300-01
Chr09	irgsp1_rep	three_prime_UTR	3495169	3495210	.	-	.	Parent=Os09t0246300-01
Chr09	irgsp1_rep	three_prime_UTR	3480937	3481007	.	-	.	Parent=Os09t0246300-01
Chr09	irgsp1_rep	three_prime_UTR	3480171	3480448	.	-	.	Parent=Os09t0246300-01
Chr09	irgsp1_rep	mRNA	3494380	3496469	.	-	.	ID=Os09t0246300-02;Name=Os09t0246300-02;Locus_id=Os09g0246300;Note=Conserved hypothetical protein.;Transcript_evidence=AK064599 (DDBJ%2C Best hit);ORF_evidence=Q65XG0 (UniProt);NIAS_FLcDNA=002-112-H04;TENOR=Os09t0246300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	3496229	3496469	.	-	.	Parent=Os09t0246300-02
Chr09	irgsp1_rep	five_prime_UTR	3495173	3495229	.	-	.	Parent=Os09t0246300-02
Chr09	irgsp1_rep	five_prime_UTR	3494508	3494804	.	-	.	Parent=Os09t0246300-02
Chr09	irgsp1_rep	CDS	3494380	3494507	.	-	0	Parent=Os09t0246300-02
Chr09	irgsp1_rep	mRNA	3490456	3492414	.	-	.	ID=Os09t0246500-01;Name=Os09t0246500-01;Locus_id=Os09g0246500;Note=Conserved hypothetical protein.;Transcript_evidence=AK109459 (DDBJ%2C Best hit);ORF_evidence=B8BD80 (UniProt);NIAS_FLcDNA=001-127-C04;Expression=AK109459;TENOR=Os09t0246500-01;KEGG=Os09t0246500-01
Chr09	irgsp1_rep	five_prime_UTR	3491256	3492414	.	-	.	Parent=Os09t0246500-01
Chr09	irgsp1_rep	CDS	3490710	3491255	.	-	0	Parent=Os09t0246500-01
Chr09	irgsp1_rep	three_prime_UTR	3490456	3490709	.	-	.	Parent=Os09t0246500-01
Chr09	irgsp1_rep	mRNA	3500536	3504858	.	-	.	ID=Os09t0246700-01;Name=Os09t0246700-01;Locus_id=Os09g0246700;Note=Similar to OSIGBa0093K19.10 protein.;Transcript_evidence=AK121936 (DDBJ%2C Best hit);ORF_evidence=Q01K98 (UniProt);NIAS_FLcDNA=J033107C02;Expression=AK121936;TENOR=Os09t0246700-01;KEGG=Os09t0246700-01
Chr09	irgsp1_rep	five_prime_UTR	3504683	3504858	.	-	.	Parent=Os09t0246700-01
Chr09	irgsp1_rep	five_prime_UTR	3503904	3504051	.	-	.	Parent=Os09t0246700-01
Chr09	irgsp1_rep	CDS	3503738	3503903	.	-	0	Parent=Os09t0246700-01
Chr09	irgsp1_rep	CDS	3502419	3502654	.	-	2	Parent=Os09t0246700-01
Chr09	irgsp1_rep	CDS	3500679	3501242	.	-	0	Parent=Os09t0246700-01
Chr09	irgsp1_rep	three_prime_UTR	3500536	3500678	.	-	.	Parent=Os09t0246700-01
Chr09	irgsp1_rep	mRNA	3500833	3504031	.	+	.	ID=Os09t0246900-00;Name=Os09t0246900-00;Locus_id=Os09g0246900;Note=Hypothetical protein.;Transcript_evidence=tplb0058h13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0246900-00
Chr09	irgsp1_rep	five_prime_UTR	3500833	3501752	.	+	.	Parent=Os09t0246900-00
Chr09	irgsp1_rep	five_prime_UTR	3501986	3502497	.	+	.	Parent=Os09t0246900-00
Chr09	irgsp1_rep	CDS	3502498	3502710	.	+	0	Parent=Os09t0246900-00
Chr09	irgsp1_rep	CDS	3503391	3503396	.	+	0	Parent=Os09t0246900-00
Chr09	irgsp1_rep	three_prime_UTR	3503397	3504031	.	+	.	Parent=Os09t0246900-00
Chr09	irgsp1_rep	mRNA	3570861	3573883	.	-	.	ID=Os09t0247101-01;Name=Os09t0247101-01;Locus_id=Os09g0247101;Note=Hypothetical conserved gene.;Transcript_evidence=AK288925 (DDBJ%2C Best hit);ORF_evidence=Q6K4G6 (UniProt);NIAS_FLcDNA=J090082B10;TENOR=Os09t0247101-01;KEGG=Os09t0247101-01
Chr09	irgsp1_rep	five_prime_UTR	3571671	3573883	.	-	.	Parent=Os09t0247101-01
Chr09	irgsp1_rep	CDS	3571479	3571670	.	-	0	Parent=Os09t0247101-01
Chr09	irgsp1_rep	three_prime_UTR	3570861	3571478	.	-	.	Parent=Os09t0247101-01
Chr09	irgsp1_rep	mRNA	3579976	3580656	.	+	.	ID=Os09t0247500-01;Name=Os09t0247500-01;Locus_id=Os09g0247500;Note=Conserved hypothetical protein.;Transcript_evidence=AK109296 (DDBJ%2C Best hit);ORF_evidence=A3BWE6 (UniProt);NIAS_FLcDNA=002-188-D05;TENOR=Os09t0247500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	3579976	3580284	.	+	.	Parent=Os09t0247500-01
Chr09	irgsp1_rep	CDS	3580285	3580485	.	+	0	Parent=Os09t0247500-01
Chr09	irgsp1_rep	three_prime_UTR	3580486	3580656	.	+	.	Parent=Os09t0247500-01
Chr09	irgsp1_rep	mRNA	3581289	3586049	.	-	.	ID=Os09t0247600-01;Name=Os09t0247600-01;Locus_id=Os09g0247600;CGSNL Gene Symbol=GELP99;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 99;Oryzabase Gene Symbol Synonym(s)=OsGELP99;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 99;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK107173 (DDBJ%2C Best hit);ORF_evidence=NP_001150129.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087),Esterase%2C SGNH hydrolase-type%2C subgroup (IPR013831);NIAS_FLcDNA=002-124-G06;Oryzabase=11049;Expression=AK107173;TENOR=Os09t0247600-01;KEGG=Os09t0247600-01
Chr09	irgsp1_rep	five_prime_UTR	3586007	3586049	.	-	.	Parent=Os09t0247600-01
Chr09	irgsp1_rep	CDS	3585620	3586006	.	-	0	Parent=Os09t0247600-01
Chr09	irgsp1_rep	CDS	3582685	3583174	.	-	0	Parent=Os09t0247600-01
Chr09	irgsp1_rep	CDS	3581358	3581551	.	-	2	Parent=Os09t0247600-01
Chr09	irgsp1_rep	three_prime_UTR	3581289	3581357	.	-	.	Parent=Os09t0247600-01
Chr09	irgsp1_rep	mRNA	3586851	3607830	.	-	.	ID=Os09t0247700-01;Name=Os09t0247700-01;Locus_id=Os09g0247700;RAP-DB Gene Symbol Synonym(s)=BIG%2C OsBIG;CGSNL Gene Symbol=BIG;Oryzabase Gene Symbol Synonym(s)=OsBIG;Note=Homolog of Arabidopsis BIG%2C Essential for normal growth and development;Transcript_evidence=MH464384,AK059400 (truncated);ORF_evidence=A0A3R5SQC7;GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Armadillo-type fold (IPR016024),E3 ubiquitin ligase%2C UBR4 (IPR025704),Zinc finger%2C UBR-type (IPR003126),Zinc finger%2C ZZ-type (IPR000433);NIAS_FLcDNA=001-027-B03 (truncated);Manual Curation=October 11%2C 2019;Literature_PMID=30530202;Oryzabase=23003;TENOR=Os09t0247700-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	3607605	3607830	.	-	0	Parent=Os09t0247700-01
Chr09	irgsp1_rep	CDS	3605696	3605802	.	-	2	Parent=Os09t0247700-01
Chr09	irgsp1_rep	CDS	3605327	3605492	.	-	0	Parent=Os09t0247700-01
Chr09	irgsp1_rep	CDS	3599210	3605232	.	-	2	Parent=Os09t0247700-01
Chr09	irgsp1_rep	CDS	3598386	3599003	.	-	0	Parent=Os09t0247700-01
Chr09	irgsp1_rep	CDS	3598110	3598290	.	-	0	Parent=Os09t0247700-01
Chr09	irgsp1_rep	CDS	3596668	3596902	.	-	2	Parent=Os09t0247700-01
Chr09	irgsp1_rep	CDS	3592018	3596556	.	-	1	Parent=Os09t0247700-01
Chr09	irgsp1_rep	CDS	3591687	3591909	.	-	1	Parent=Os09t0247700-01
Chr09	irgsp1_rep	CDS	3591162	3591563	.	-	0	Parent=Os09t0247700-01
Chr09	irgsp1_rep	CDS	3590271	3590414	.	-	0	Parent=Os09t0247700-01
Chr09	irgsp1_rep	CDS	3588903	3589928	.	-	0	Parent=Os09t0247700-01
Chr09	irgsp1_rep	CDS	3588274	3588777	.	-	0	Parent=Os09t0247700-01
Chr09	irgsp1_rep	CDS	3586851	3587663	.	-	0	Parent=Os09t0247700-01
Chr09	irgsp1_rep	mRNA	3620063	3622547	.	+	.	ID=Os09t0248000-01;Name=Os09t0248000-01;Locus_id=Os09g0248000;Note=D-aminoacyl-tRNA deacylase domain containing protein.;Transcript_evidence=AK120327 (DDBJ%2C Best hit);ORF_evidence=B6TBC4 (UniProt);GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=D-aminoacyl-tRNA deacylase (IPR007508);NIAS_FLcDNA=J013058A15;Expression=AK120327;TENOR=Os09t0248000-01;KEGG=Os09t0248000-01
Chr09	irgsp1_rep	five_prime_UTR	3620063	3620196	.	+	.	Parent=Os09t0248000-01
Chr09	irgsp1_rep	CDS	3620197	3620298	.	+	0	Parent=Os09t0248000-01
Chr09	irgsp1_rep	CDS	3621550	3621733	.	+	0	Parent=Os09t0248000-01
Chr09	irgsp1_rep	CDS	3622053	3622195	.	+	2	Parent=Os09t0248000-01
Chr09	irgsp1_rep	CDS	3622273	3622374	.	+	0	Parent=Os09t0248000-01
Chr09	irgsp1_rep	three_prime_UTR	3622375	3622547	.	+	.	Parent=Os09t0248000-01
Chr09	irgsp1_rep	mRNA	3620080	3633132	.	+	.	ID=Os09t0248000-02;Name=Os09t0248000-02;Locus_id=Os09g0248000;Note=D-aminoacyl-tRNA deacylase domain containing protein.;Transcript_evidence=AK065068 (DDBJ%2C Best hit);ORF_evidence=B6TBC4 (UniProt);GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=D-aminoacyl-tRNA deacylase (IPR007508);NIAS_FLcDNA=J013001K02;Expression=AK065068;TENOR=Os09t0248000-02;KEGG=Os09t0248000-02
Chr09	irgsp1_rep	five_prime_UTR	3620080	3620196	.	+	.	Parent=Os09t0248000-02
Chr09	irgsp1_rep	CDS	3620197	3620298	.	+	0	Parent=Os09t0248000-02
Chr09	irgsp1_rep	CDS	3621550	3621733	.	+	0	Parent=Os09t0248000-02
Chr09	irgsp1_rep	CDS	3622053	3622195	.	+	2	Parent=Os09t0248000-02
Chr09	irgsp1_rep	CDS	3622273	3622374	.	+	0	Parent=Os09t0248000-02
Chr09	irgsp1_rep	three_prime_UTR	3622375	3623689	.	+	.	Parent=Os09t0248000-02
Chr09	irgsp1_rep	three_prime_UTR	3626153	3626205	.	+	.	Parent=Os09t0248000-02
Chr09	irgsp1_rep	three_prime_UTR	3626618	3626673	.	+	.	Parent=Os09t0248000-02
Chr09	irgsp1_rep	three_prime_UTR	3627552	3627620	.	+	.	Parent=Os09t0248000-02
Chr09	irgsp1_rep	three_prime_UTR	3629172	3629357	.	+	.	Parent=Os09t0248000-02
Chr09	irgsp1_rep	three_prime_UTR	3629508	3629643	.	+	.	Parent=Os09t0248000-02
Chr09	irgsp1_rep	three_prime_UTR	3632656	3633132	.	+	.	Parent=Os09t0248000-02
Chr09	irgsp1_rep	mRNA	3620123	3633063	.	+	.	ID=Os09t0248000-03;Name=Os09t0248000-03;Locus_id=Os09g0248000;Note=Similar to Ethanol tolerance protein GEKO1.;Transcript_evidence=AK106209 (DDBJ%2C Best hit);ORF_evidence=B6TBC4 (UniProt);GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=D-aminoacyl-tRNA deacylase (IPR007508),D-Tyr-tRNATyr deacylase (IPR018033);NIAS_FLcDNA=001-208-G05;Expression=AK106209;TENOR=Os09t0248000-03;KEGG=Os09t0248000-03
Chr09	irgsp1_rep	five_prime_UTR	3620123	3620196	.	+	.	Parent=Os09t0248000-03
Chr09	irgsp1_rep	CDS	3620197	3620298	.	+	0	Parent=Os09t0248000-03
Chr09	irgsp1_rep	CDS	3621550	3621733	.	+	0	Parent=Os09t0248000-03
Chr09	irgsp1_rep	CDS	3622053	3622195	.	+	2	Parent=Os09t0248000-03
Chr09	irgsp1_rep	CDS	3622273	3622336	.	+	0	Parent=Os09t0248000-03
Chr09	irgsp1_rep	CDS	3626153	3626205	.	+	2	Parent=Os09t0248000-03
Chr09	irgsp1_rep	CDS	3626618	3626673	.	+	0	Parent=Os09t0248000-03
Chr09	irgsp1_rep	CDS	3627552	3627620	.	+	1	Parent=Os09t0248000-03
Chr09	irgsp1_rep	CDS	3629172	3629292	.	+	1	Parent=Os09t0248000-03
Chr09	irgsp1_rep	CDS	3629508	3629582	.	+	0	Parent=Os09t0248000-03
Chr09	irgsp1_rep	three_prime_UTR	3629583	3629643	.	+	.	Parent=Os09t0248000-03
Chr09	irgsp1_rep	three_prime_UTR	3632656	3633063	.	+	.	Parent=Os09t0248000-03
Chr09	irgsp1_rep	mRNA	3620123	3624808	.	+	.	ID=Os09t0248000-04;Name=Os09t0248000-04;Locus_id=Os09g0248000;Note=Similar to Ethanol tolerance protein GEKO1.;Transcript_evidence=AK100378 (DDBJ%2C Best hit);ORF_evidence=B6TBC4 (UniProt);GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=D-aminoacyl-tRNA deacylase (IPR007508);NIAS_FLcDNA=J023085B20;Expression=AK100378;TENOR=Os09t0248000-04;KEGG=Os09t0248000-04
Chr09	irgsp1_rep	five_prime_UTR	3620123	3620196	.	+	.	Parent=Os09t0248000-04
Chr09	irgsp1_rep	CDS	3620197	3620298	.	+	0	Parent=Os09t0248000-04
Chr09	irgsp1_rep	CDS	3621550	3621792	.	+	0	Parent=Os09t0248000-04
Chr09	irgsp1_rep	three_prime_UTR	3621793	3622195	.	+	.	Parent=Os09t0248000-04
Chr09	irgsp1_rep	three_prime_UTR	3622273	3624808	.	+	.	Parent=Os09t0248000-04
Chr09	irgsp1_rep	mRNA	3654992	3658609	.	+	.	ID=Os09t0248100-01;Name=Os09t0248100-01;Locus_id=Os09g0248100;CGSNL Gene Symbol=FLA11;CGSNL Gene Name=FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 11;Oryzabase Gene Symbol Synonym(s)=OsFLA11;Oryzabase Gene Name Synonym(s)=fasciclin-like AGP 11%2C fasciclin-like arabinogalactan protein 11;Note=FAS1 domain domain containing protein.;Transcript_evidence=AK105777 (DDBJ%2C Best hit);ORF_evidence=Q06I78 (UniProt);InterPro=FAS1 domain (IPR000782);NIAS_FLcDNA=001-202-F09;Oryzabase=11346;Expression=AK105777;TENOR=Os09t0248100-01;KEGG=Os09t0248100-01
Chr09	irgsp1_rep	five_prime_UTR	3654992	3655098	.	+	.	Parent=Os09t0248100-01
Chr09	irgsp1_rep	CDS	3655099	3655449	.	+	0	Parent=Os09t0248100-01
Chr09	irgsp1_rep	CDS	3657529	3658383	.	+	0	Parent=Os09t0248100-01
Chr09	irgsp1_rep	three_prime_UTR	3658384	3658609	.	+	.	Parent=Os09t0248100-01
Chr09	irgsp1_rep	mRNA	3655018	3658584	.	+	.	ID=Os09t0248100-02;Name=Os09t0248100-02;Locus_id=Os09g0248100;CGSNL Gene Symbol=FLA11;CGSNL Gene Name=FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 11;Oryzabase Gene Symbol Synonym(s)=OsFLA11;Oryzabase Gene Name Synonym(s)=fasciclin-like AGP 11%2C fasciclin-like arabinogalactan protein 11;Note=FAS1 domain domain containing protein.;Transcript_evidence=AK068535 (DDBJ%2C Best hit);ORF_evidence=Q06I78 (UniProt);InterPro=FAS1 domain (IPR000782);NIAS_FLcDNA=J013151B22;Oryzabase=11346;Expression=AK068535;TENOR=Os09t0248100-02;KEGG=Os09t0248100-02
Chr09	irgsp1_rep	five_prime_UTR	3655018	3655098	.	+	.	Parent=Os09t0248100-02
Chr09	irgsp1_rep	CDS	3655099	3655449	.	+	0	Parent=Os09t0248100-02
Chr09	irgsp1_rep	CDS	3657529	3658383	.	+	0	Parent=Os09t0248100-02
Chr09	irgsp1_rep	three_prime_UTR	3658384	3658584	.	+	.	Parent=Os09t0248100-02
Chr09	irgsp1_rep	mRNA	3655064	3658609	.	+	.	ID=Os09t0248100-03;Name=Os09t0248100-03;Locus_id=Os09g0248100;CGSNL Gene Symbol=FLA11;CGSNL Gene Name=FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 11;Oryzabase Gene Symbol Synonym(s)=OsFLA11;Oryzabase Gene Name Synonym(s)=fasciclin-like AGP 11%2C fasciclin-like arabinogalactan protein 11;Note=FAS1 domain domain containing protein.;Transcript_evidence=AK061377 (DDBJ%2C Best hit);ORF_evidence=Q06I78 (UniProt);InterPro=FAS1 domain (IPR000782);NIAS_FLcDNA=006-304-G08;Oryzabase=11346;Expression=AK061377;TENOR=Os09t0248100-03;KEGG=Os09t0248100-03
Chr09	irgsp1_rep	five_prime_UTR	3655064	3655098	.	+	.	Parent=Os09t0248100-03
Chr09	irgsp1_rep	CDS	3655099	3655449	.	+	0	Parent=Os09t0248100-03
Chr09	irgsp1_rep	CDS	3657529	3658383	.	+	0	Parent=Os09t0248100-03
Chr09	irgsp1_rep	three_prime_UTR	3658384	3658609	.	+	.	Parent=Os09t0248100-03
Chr09	irgsp1_rep	mRNA	3660404	3665389	.	-	.	ID=Os09t0248200-01;Name=Os09t0248200-01;Locus_id=Os09g0248200;Note=Similar to ABI3-interacting protein 2.;Transcript_evidence=AK103826 (DDBJ%2C Best hit);ORF_evidence=NP_001151902.1 (RefSeq);InterPro=Frigida-like (IPR012474);NIAS_FLcDNA=J033147L19;Expression=AK103826;TENOR=Os09t0248200-01;KEGG=Os09t0248200-01
Chr09	irgsp1_rep	five_prime_UTR	3665190	3665389	.	-	.	Parent=Os09t0248200-01
Chr09	irgsp1_rep	five_prime_UTR	3664896	3664907	.	-	.	Parent=Os09t0248200-01
Chr09	irgsp1_rep	CDS	3663842	3664895	.	-	0	Parent=Os09t0248200-01
Chr09	irgsp1_rep	CDS	3662438	3662607	.	-	2	Parent=Os09t0248200-01
Chr09	irgsp1_rep	CDS	3660732	3661145	.	-	0	Parent=Os09t0248200-01
Chr09	irgsp1_rep	three_prime_UTR	3660404	3660731	.	-	.	Parent=Os09t0248200-01
Chr09	irgsp1_rep	mRNA	3656769	3665366	.	-	.	ID=Os09t0248200-02;Name=Os09t0248200-02;Locus_id=Os09g0248200;Note=Frigida-like family protein.;Transcript_evidence=AK107545 (DDBJ%2C Best hit);ORF_evidence=NP_001151902.1 (RefSeq);InterPro=Frigida-like (IPR012474);NIAS_FLcDNA=002-130-A02;Expression=AK107545;TENOR=Os09t0248200-02;KEGG=Os09t0248200-02
Chr09	irgsp1_rep	five_prime_UTR	3665190	3665366	.	-	.	Parent=Os09t0248200-02
Chr09	irgsp1_rep	five_prime_UTR	3664896	3664907	.	-	.	Parent=Os09t0248200-02
Chr09	irgsp1_rep	CDS	3663842	3664895	.	-	0	Parent=Os09t0248200-02
Chr09	irgsp1_rep	CDS	3662438	3662607	.	-	2	Parent=Os09t0248200-02
Chr09	irgsp1_rep	CDS	3660776	3661145	.	-	0	Parent=Os09t0248200-02
Chr09	irgsp1_rep	CDS	3657089	3657117	.	-	2	Parent=Os09t0248200-02
Chr09	irgsp1_rep	three_prime_UTR	3656769	3657088	.	-	.	Parent=Os09t0248200-02
Chr09	irgsp1_rep	mRNA	3660489	3664338	.	-	.	ID=Os09t0248200-03;Name=Os09t0248200-03;Locus_id=Os09g0248200;Note=Similar to ABI3-interacting protein 2.;Transcript_evidence=AK060788 (DDBJ%2C Best hit);ORF_evidence=NP_001151902.1 (RefSeq);InterPro=Frigida-like (IPR012474);NIAS_FLcDNA=001-033-D08;Expression=AK060788;TENOR=Os09t0248200-03;KEGG=Os09t0248200-03
Chr09	irgsp1_rep	five_prime_UTR	3664338	3664338	.	-	.	Parent=Os09t0248200-03
Chr09	irgsp1_rep	CDS	3663842	3664337	.	-	0	Parent=Os09t0248200-03
Chr09	irgsp1_rep	CDS	3662438	3662607	.	-	2	Parent=Os09t0248200-03
Chr09	irgsp1_rep	CDS	3660732	3661145	.	-	0	Parent=Os09t0248200-03
Chr09	irgsp1_rep	three_prime_UTR	3660489	3660731	.	-	.	Parent=Os09t0248200-03
Chr09	irgsp1_rep	mRNA	3670047	3675486	.	-	.	ID=Os09t0248300-01;Name=Os09t0248300-01;Locus_id=Os09g0248300;Note=Tektin domain containing protein.;Transcript_evidence=AK099919 (DDBJ%2C Best hit);ORF_evidence=NP_001151902.1 (RefSeq);InterPro=Frigida-like (IPR012474);NIAS_FLcDNA=J013116K21;Expression=AK099919;TENOR=Os09t0248300-01;KEGG=Os09t0248300-01
Chr09	irgsp1_rep	five_prime_UTR	3675348	3675486	.	-	.	Parent=Os09t0248300-01
Chr09	irgsp1_rep	five_prime_UTR	3674921	3674931	.	-	.	Parent=Os09t0248300-01
Chr09	irgsp1_rep	CDS	3673879	3674920	.	-	0	Parent=Os09t0248300-01
Chr09	irgsp1_rep	CDS	3672113	3672282	.	-	2	Parent=Os09t0248300-01
Chr09	irgsp1_rep	CDS	3670286	3670702	.	-	0	Parent=Os09t0248300-01
Chr09	irgsp1_rep	three_prime_UTR	3670047	3670285	.	-	.	Parent=Os09t0248300-01
Chr09	irgsp1_rep	mRNA	3719068	3730935	.	-	.	ID=Os09t0248900-01;Name=Os09t0248900-01;Locus_id=Os09g0248900;Note=Myb/SANT-like domain domain containing protein.;Transcript_evidence=AK067408 (DDBJ%2C Best hit);ORF_evidence=B9G2B3 (UniProt);InterPro=Myb/SANT-like domain (IPR024752);NIAS_FLcDNA=J013102F13;TENOR=Os09t0248900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	3730863	3730935	.	-	.	Parent=Os09t0248900-01
Chr09	irgsp1_rep	five_prime_UTR	3728636	3728751	.	-	.	Parent=Os09t0248900-01
Chr09	irgsp1_rep	five_prime_UTR	3728348	3728466	.	-	.	Parent=Os09t0248900-01
Chr09	irgsp1_rep	five_prime_UTR	3728171	3728234	.	-	.	Parent=Os09t0248900-01
Chr09	irgsp1_rep	five_prime_UTR	3728022	3728089	.	-	.	Parent=Os09t0248900-01
Chr09	irgsp1_rep	five_prime_UTR	3726959	3727017	.	-	.	Parent=Os09t0248900-01
Chr09	irgsp1_rep	five_prime_UTR	3726714	3726873	.	-	.	Parent=Os09t0248900-01
Chr09	irgsp1_rep	five_prime_UTR	3726579	3726598	.	-	.	Parent=Os09t0248900-01
Chr09	irgsp1_rep	five_prime_UTR	3726364	3726410	.	-	.	Parent=Os09t0248900-01
Chr09	irgsp1_rep	five_prime_UTR	3723330	3723410	.	-	.	Parent=Os09t0248900-01
Chr09	irgsp1_rep	five_prime_UTR	3723151	3723240	.	-	.	Parent=Os09t0248900-01
Chr09	irgsp1_rep	five_prime_UTR	3722323	3723051	.	-	.	Parent=Os09t0248900-01
Chr09	irgsp1_rep	five_prime_UTR	3722196	3722239	.	-	.	Parent=Os09t0248900-01
Chr09	irgsp1_rep	five_prime_UTR	3720540	3720547	.	-	.	Parent=Os09t0248900-01
Chr09	irgsp1_rep	CDS	3720165	3720539	.	-	0	Parent=Os09t0248900-01
Chr09	irgsp1_rep	CDS	3719390	3720088	.	-	0	Parent=Os09t0248900-01
Chr09	irgsp1_rep	three_prime_UTR	3719068	3719389	.	-	.	Parent=Os09t0248900-01
Chr09	irgsp1_rep	mRNA	3732475	3734886	.	-	.	ID=Os09t0249000-01;Name=Os09t0249000-01;Locus_id=Os09g0249000;Note=Galactose oxidase/kelch%2C beta-propeller domain containing protein.;Transcript_evidence=AK072805 (DDBJ%2C Best hit);ORF_evidence=Q8VWY8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Kelch repeat type 1 (IPR006652),Kelch-type beta propeller (IPR015915);NIAS_FLcDNA=J023138D22;Expression=AK072805;TENOR=Os09t0249000-01;KEGG=Os09t0249000-01
Chr09	irgsp1_rep	five_prime_UTR	3734796	3734886	.	-	.	Parent=Os09t0249000-01
Chr09	irgsp1_rep	CDS	3734766	3734795	.	-	0	Parent=Os09t0249000-01
Chr09	irgsp1_rep	CDS	3732655	3733623	.	-	0	Parent=Os09t0249000-01
Chr09	irgsp1_rep	three_prime_UTR	3732475	3732654	.	-	.	Parent=Os09t0249000-01
Chr09	irgsp1_rep	mRNA	3732535	3733911	.	+	.	ID=Os09t0249100-01;Name=Os09t0249100-01;Locus_id=Os09g0249100;Note=Hypothetical protein.;Transcript_evidence=AK109884 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-149-D09;TENOR=Os09t0249100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	3732535	3733623	.	+	0	Parent=Os09t0249100-01
Chr09	irgsp1_rep	three_prime_UTR	3733624	3733911	.	+	.	Parent=Os09t0249100-01
Chr09	irgsp1_rep	mRNA	3745713	3749009	.	+	.	ID=Os09t0249400-01;Name=Os09t0249400-01;Locus_id=Os09g0249400;Note=Uncharacterised protein family UPF0497%2C trans-membrane plant domain containing protein.;Transcript_evidence=AK063577 (DDBJ%2C Best hit);ORF_evidence=B8BD96 (UniProt);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);NIAS_FLcDNA=001-117-H03;Expression=AK063577;TENOR=Os09t0249400-01;KEGG=Os09t0249400-01
Chr09	irgsp1_rep	five_prime_UTR	3745713	3745885	.	+	.	Parent=Os09t0249400-01
Chr09	irgsp1_rep	CDS	3745886	3746016	.	+	0	Parent=Os09t0249400-01
Chr09	irgsp1_rep	CDS	3747782	3747914	.	+	1	Parent=Os09t0249400-01
Chr09	irgsp1_rep	CDS	3748690	3748890	.	+	0	Parent=Os09t0249400-01
Chr09	irgsp1_rep	three_prime_UTR	3748891	3749009	.	+	.	Parent=Os09t0249400-01
Chr09	irgsp1_rep	mRNA	3751131	3753140	.	-	.	ID=Os09t0249600-01;Name=Os09t0249600-01;Locus_id=Os09g0249600;Note=Similar to small nuclear ribonucleoprotein family protein / snRNP family protein.;Transcript_evidence=AK059394 (DDBJ%2C Best hit);ORF_evidence=NP_174127.1 (RefSeq);InterPro=Domain of unknown function DUF1115 (IPR010541),Pre-mRNA-splicing factor 3 (IPR013881);NIAS_FLcDNA=001-026-H12;TENOR=Os09t0249600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	3752916	3753140	.	-	0	Parent=Os09t0249600-01
Chr09	irgsp1_rep	CDS	3752630	3752824	.	-	0	Parent=Os09t0249600-01
Chr09	irgsp1_rep	CDS	3752379	3752539	.	-	0	Parent=Os09t0249600-01
Chr09	irgsp1_rep	CDS	3751443	3752304	.	-	1	Parent=Os09t0249600-01
Chr09	irgsp1_rep	three_prime_UTR	3751131	3751442	.	-	.	Parent=Os09t0249600-01
Chr09	irgsp1_rep	mRNA	3751060	3752739	.	-	.	ID=Os09t0249600-02;Name=Os09t0249600-02;Locus_id=Os09g0249600;Note=Similar to predicted protein.;Transcript_evidence=AK068062 (DDBJ%2C Best hit);ORF_evidence=NP_174127.1 (RefSeq);InterPro=Domain of unknown function DUF1115 (IPR010541),Pre-mRNA-splicing factor 3 (IPR013881);NIAS_FLcDNA=J013129F10;Expression=AK068062;TENOR=Os09t0249600-02;KEGG=Os09t0249600-02
Chr09	irgsp1_rep	five_prime_UTR	3752738	3752739	.	-	.	Parent=Os09t0249600-02
Chr09	irgsp1_rep	CDS	3752630	3752737	.	-	0	Parent=Os09t0249600-02
Chr09	irgsp1_rep	CDS	3752379	3752539	.	-	0	Parent=Os09t0249600-02
Chr09	irgsp1_rep	CDS	3751443	3752304	.	-	1	Parent=Os09t0249600-02
Chr09	irgsp1_rep	three_prime_UTR	3751060	3751442	.	-	.	Parent=Os09t0249600-02
Chr09	irgsp1_rep	mRNA	3758081	3764491	.	-	.	ID=Os09t0249700-01;Name=Os09t0249700-01;Locus_id=Os09g0249700;CGSNL Gene Symbol=PP2A-A;CGSNL Gene Name=PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT A;Oryzabase Gene Symbol Synonym(s)=PP2A-A%2C RPA1;Oryzabase Gene Name Synonym(s)=protein phosphatase 2A A subunit;Note=Protein phosphatase 2A A subunit (Phosphatase 2A regulatory A subunit).;Transcript_evidence=AK069757 (DDBJ%2C Best hit);ORF_evidence=Q9S7C5 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=HEAT (IPR000357),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),HEAT%2C type 2 (IPR021133);NIAS_FLcDNA=J023031G02;Oryzabase=14509;Expression=AK069757;TENOR=Os09t0249700-01;KEGG=Os09t0249700-01
Chr09	irgsp1_rep	five_prime_UTR	3764316	3764491	.	-	.	Parent=Os09t0249700-01
Chr09	irgsp1_rep	five_prime_UTR	3763240	3763263	.	-	.	Parent=Os09t0249700-01
Chr09	irgsp1_rep	CDS	3762847	3763239	.	-	0	Parent=Os09t0249700-01
Chr09	irgsp1_rep	CDS	3762239	3762485	.	-	0	Parent=Os09t0249700-01
Chr09	irgsp1_rep	CDS	3761644	3761756	.	-	2	Parent=Os09t0249700-01
Chr09	irgsp1_rep	CDS	3761395	3761474	.	-	0	Parent=Os09t0249700-01
Chr09	irgsp1_rep	CDS	3761093	3761234	.	-	1	Parent=Os09t0249700-01
Chr09	irgsp1_rep	CDS	3760926	3761006	.	-	0	Parent=Os09t0249700-01
Chr09	irgsp1_rep	CDS	3760679	3760783	.	-	0	Parent=Os09t0249700-01
Chr09	irgsp1_rep	CDS	3760115	3760297	.	-	0	Parent=Os09t0249700-01
Chr09	irgsp1_rep	CDS	3759520	3759612	.	-	0	Parent=Os09t0249700-01
Chr09	irgsp1_rep	CDS	3758690	3758829	.	-	0	Parent=Os09t0249700-01
Chr09	irgsp1_rep	CDS	3758543	3758609	.	-	1	Parent=Os09t0249700-01
Chr09	irgsp1_rep	CDS	3758326	3758445	.	-	0	Parent=Os09t0249700-01
Chr09	irgsp1_rep	three_prime_UTR	3758081	3758325	.	-	.	Parent=Os09t0249700-01
Chr09	irgsp1_rep	mRNA	3758164	3762400	.	-	.	ID=Os09t0249700-02;Name=Os09t0249700-02;Locus_id=Os09g0249700;CGSNL Gene Symbol=PP2A-A;CGSNL Gene Name=PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT A;Oryzabase Gene Symbol Synonym(s)=PP2A-A%2C RPA1;Oryzabase Gene Name Synonym(s)=protein phosphatase 2A A subunit;Note=Similar to Phosphatase 2A regulatory A subunit.;Transcript_evidence=AK059103 (DDBJ%2C Best hit);ORF_evidence=Q9S7C5 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=HEAT (IPR000357),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),HEAT%2C type 2 (IPR021133);NIAS_FLcDNA=001-022-D03;Oryzabase=14509;Expression=AK059103;TENOR=Os09t0249700-02;KEGG=Os09t0249700-02
Chr09	irgsp1_rep	five_prime_UTR	3762399	3762400	.	-	.	Parent=Os09t0249700-02
Chr09	irgsp1_rep	CDS	3762239	3762398	.	-	0	Parent=Os09t0249700-02
Chr09	irgsp1_rep	CDS	3761644	3761756	.	-	2	Parent=Os09t0249700-02
Chr09	irgsp1_rep	CDS	3761395	3761474	.	-	0	Parent=Os09t0249700-02
Chr09	irgsp1_rep	CDS	3761093	3761234	.	-	1	Parent=Os09t0249700-02
Chr09	irgsp1_rep	CDS	3760926	3761006	.	-	0	Parent=Os09t0249700-02
Chr09	irgsp1_rep	CDS	3760679	3760783	.	-	0	Parent=Os09t0249700-02
Chr09	irgsp1_rep	CDS	3760115	3760297	.	-	0	Parent=Os09t0249700-02
Chr09	irgsp1_rep	CDS	3759520	3759612	.	-	0	Parent=Os09t0249700-02
Chr09	irgsp1_rep	CDS	3758690	3758829	.	-	0	Parent=Os09t0249700-02
Chr09	irgsp1_rep	CDS	3758543	3758609	.	-	1	Parent=Os09t0249700-02
Chr09	irgsp1_rep	CDS	3758326	3758445	.	-	0	Parent=Os09t0249700-02
Chr09	irgsp1_rep	three_prime_UTR	3758164	3758325	.	-	.	Parent=Os09t0249700-02
Chr09	irgsp1_rep	mRNA	3793011	3796214	.	-	.	ID=Os09t0249750-00;Name=Os09t0249750-00;Locus_id=Os09g0249750;Note=Hypothetical gene.;Transcript_evidence=BT016323 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0249750-00
Chr09	irgsp1_rep	five_prime_UTR	3796058	3796214	.	-	.	Parent=Os09t0249750-00
Chr09	irgsp1_rep	five_prime_UTR	3795870	3795925	.	-	.	Parent=Os09t0249750-00
Chr09	irgsp1_rep	CDS	3795855	3795869	.	-	0	Parent=Os09t0249750-00
Chr09	irgsp1_rep	CDS	3795353	3795440	.	-	0	Parent=Os09t0249750-00
Chr09	irgsp1_rep	CDS	3793011	3793158	.	-	2	Parent=Os09t0249750-00
Chr09	irgsp1_rep	mRNA	3792279	3796291	.	+	.	ID=Os09t0249900-01;Name=Os09t0249900-01;Locus_id=Os09g0249900;Note=Similar to Ferredoxin-thioredoxin reductase catalytic chain.;Transcript_evidence=AK099860 (DDBJ%2C Best hit);ORF_evidence=B6TNR7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: ferredoxin-NAD(P) reductase activity (GO:0008937);InterPro=Ferredoxin thioredoxin reductase beta subunit%2C domain (IPR004209),Ferredoxin-thioredoxin reductase%2C beta subunit (IPR024707);NIAS_FLcDNA=J013110N15;TENOR=Os09t0249900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	3792279	3792439	.	+	.	Parent=Os09t0249900-01
Chr09	irgsp1_rep	five_prime_UTR	3792819	3792840	.	+	.	Parent=Os09t0249900-01
Chr09	irgsp1_rep	CDS	3792841	3792925	.	+	0	Parent=Os09t0249900-01
Chr09	irgsp1_rep	CDS	3793006	3793133	.	+	2	Parent=Os09t0249900-01
Chr09	irgsp1_rep	CDS	3795220	3795269	.	+	0	Parent=Os09t0249900-01
Chr09	irgsp1_rep	CDS	3795371	3795442	.	+	1	Parent=Os09t0249900-01
Chr09	irgsp1_rep	CDS	3795857	3795914	.	+	1	Parent=Os09t0249900-01
Chr09	irgsp1_rep	CDS	3796047	3796094	.	+	0	Parent=Os09t0249900-01
Chr09	irgsp1_rep	three_prime_UTR	3796095	3796291	.	+	.	Parent=Os09t0249900-01
Chr09	irgsp1_rep	mRNA	3826098	3826963	.	-	.	ID=Os09t0250150-00;Name=Os09t0250150-00;Locus_id=Os09g0250150;Note=Conserved hypothetical protein.;Transcript_evidence=CU406895 (DDBJ%2C Best hit);ORF_evidence=NP_001175732.1 (RefSeq);TENOR=Os09t0250150-00;KEGG=Os09t0250150-00
Chr09	irgsp1_rep	five_prime_UTR	3826963	3826963	.	-	.	Parent=Os09t0250150-00
Chr09	irgsp1_rep	CDS	3826446	3826962	.	-	0	Parent=Os09t0250150-00
Chr09	irgsp1_rep	CDS	3826268	3826344	.	-	2	Parent=Os09t0250150-00
Chr09	irgsp1_rep	three_prime_UTR	3826098	3826267	.	-	.	Parent=Os09t0250150-00
Chr09	irgsp1_rep	mRNA	3826937	3832368	.	+	.	ID=Os09t0250200-00;Name=Os09t0250200-00;Locus_id=Os09g0250200;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6K2A7 (UniProt);TENOR=Os09t0250200-00
Chr09	irgsp1_rep	CDS	3826937	3827017	.	+	0	Parent=Os09t0250200-00
Chr09	irgsp1_rep	CDS	3832045	3832368	.	+	0	Parent=Os09t0250200-00
Chr09	irgsp1_rep	mRNA	3837063	3837737	.	-	.	ID=Os09t0250300-00;Name=Os09t0250300-00;Locus_id=Os09g0250300;Note=Similar to Thylakoid membrane phosphoprotein 14 kDa.;Transcript_evidence=BT065687 (DDBJ);ORF_evidence=B6TLG2 (UniProt);TENOR=Os09t0250300-00
Chr09	irgsp1_rep	CDS	3837534	3837737	.	-	0	Parent=Os09t0250300-00
Chr09	irgsp1_rep	CDS	3837313	3837399	.	-	0	Parent=Os09t0250300-00
Chr09	irgsp1_rep	CDS	3837063	3837188	.	-	0	Parent=Os09t0250300-00
Chr09	irgsp1_rep	mRNA	3838772	3839399	.	-	.	ID=Os09t0250400-01;Name=Os09t0250400-01;Locus_id=Os09g0250400;Note=Non-protein coding transcript.;Transcript_evidence=AK063670 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-119-D06;TENOR=Os09t0250400-01
Chr09	irgsp1_rep	exon	3839322	3839399	.	-	.	Parent=Os09t0250400-01
Chr09	irgsp1_rep	exon	3838772	3839263	.	-	.	Parent=Os09t0250400-01
Chr09	irgsp1_rep	mRNA	3855460	3862963	.	+	.	ID=Os09t0250700-01;Name=Os09t0250700-01;Locus_id=Os09g0250700;Note=ABC-1 domain containing protein.;Transcript_evidence=AK120335 (DDBJ%2C Best hit);ORF_evidence=NP_850536.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=ABC-1 (IPR004147),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J013059I22;Expression=AK120335;TENOR=Os09t0250700-01;KEGG=Os09t0250700-01
Chr09	irgsp1_rep	five_prime_UTR	3855460	3855480	.	+	.	Parent=Os09t0250700-01
Chr09	irgsp1_rep	five_prime_UTR	3855982	3855997	.	+	.	Parent=Os09t0250700-01
Chr09	irgsp1_rep	CDS	3855998	3856600	.	+	0	Parent=Os09t0250700-01
Chr09	irgsp1_rep	CDS	3856790	3856933	.	+	0	Parent=Os09t0250700-01
Chr09	irgsp1_rep	CDS	3857215	3857340	.	+	0	Parent=Os09t0250700-01
Chr09	irgsp1_rep	CDS	3857897	3857984	.	+	0	Parent=Os09t0250700-01
Chr09	irgsp1_rep	CDS	3858193	3858286	.	+	2	Parent=Os09t0250700-01
Chr09	irgsp1_rep	CDS	3858858	3858951	.	+	1	Parent=Os09t0250700-01
Chr09	irgsp1_rep	CDS	3859321	3859375	.	+	0	Parent=Os09t0250700-01
Chr09	irgsp1_rep	CDS	3859863	3859954	.	+	2	Parent=Os09t0250700-01
Chr09	irgsp1_rep	CDS	3860084	3860254	.	+	0	Parent=Os09t0250700-01
Chr09	irgsp1_rep	CDS	3860405	3860461	.	+	0	Parent=Os09t0250700-01
Chr09	irgsp1_rep	CDS	3860551	3860634	.	+	0	Parent=Os09t0250700-01
Chr09	irgsp1_rep	CDS	3860719	3860803	.	+	0	Parent=Os09t0250700-01
Chr09	irgsp1_rep	CDS	3861134	3861195	.	+	2	Parent=Os09t0250700-01
Chr09	irgsp1_rep	CDS	3861447	3861521	.	+	0	Parent=Os09t0250700-01
Chr09	irgsp1_rep	CDS	3861640	3861744	.	+	0	Parent=Os09t0250700-01
Chr09	irgsp1_rep	CDS	3862112	3862253	.	+	0	Parent=Os09t0250700-01
Chr09	irgsp1_rep	CDS	3862500	3862573	.	+	2	Parent=Os09t0250700-01
Chr09	irgsp1_rep	three_prime_UTR	3862574	3862963	.	+	.	Parent=Os09t0250700-01
Chr09	irgsp1_rep	mRNA	3866696	3890495	.	-	.	ID=Os09t0250800-00;Name=Os09t0250800-00;Locus_id=Os09g0250800;CGSNL Gene Symbol=ABCG20;CGSNL Gene Name=ABC TRANSPORTER G FAMILY MEMBER 20;Oryzabase Gene Symbol Synonym(s)=OsABCG20;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 20;Note=Similar to ABC-2 type transporter family protein.;Transcript_evidence=AK366062 (DDBJ);ORF_evidence=Q10A32 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC-2 type transporter (IPR013525),ABC transporter%2C conserved site (IPR017871);Oryzabase=11997;TENOR=Os09t0250800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	3889961	3890495	.	-	0	Parent=Os09t0250800-00
Chr09	irgsp1_rep	CDS	3883538	3883617	.	-	2	Parent=Os09t0250800-00
Chr09	irgsp1_rep	CDS	3869314	3869778	.	-	0	Parent=Os09t0250800-00
Chr09	irgsp1_rep	CDS	3869105	3869191	.	-	0	Parent=Os09t0250800-00
Chr09	irgsp1_rep	CDS	3868663	3868791	.	-	0	Parent=Os09t0250800-00
Chr09	irgsp1_rep	CDS	3868312	3868500	.	-	0	Parent=Os09t0250800-00
Chr09	irgsp1_rep	CDS	3868132	3868218	.	-	0	Parent=Os09t0250800-00
Chr09	irgsp1_rep	CDS	3866696	3867346	.	-	0	Parent=Os09t0250800-00
Chr09	irgsp1_rep	mRNA	3866775	3869779	.	+	.	ID=Os09t0250875-00;Name=Os09t0250875-00;Locus_id=Os09g0250875;Note=Hypothetical protein.;Transcript_evidence=tplb0024i20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0250875-00
Chr09	irgsp1_rep	five_prime_UTR	3866775	3867338	.	+	.	Parent=Os09t0250875-00
Chr09	irgsp1_rep	five_prime_UTR	3868125	3868186	.	+	.	Parent=Os09t0250875-00
Chr09	irgsp1_rep	five_prime_UTR	3868281	3868493	.	+	.	Parent=Os09t0250875-00
Chr09	irgsp1_rep	five_prime_UTR	3868934	3869170	.	+	.	Parent=Os09t0250875-00
Chr09	irgsp1_rep	five_prime_UTR	3869287	3869344	.	+	.	Parent=Os09t0250875-00
Chr09	irgsp1_rep	CDS	3869345	3869719	.	+	0	Parent=Os09t0250875-00
Chr09	irgsp1_rep	three_prime_UTR	3869720	3869779	.	+	.	Parent=Os09t0250875-00
Chr09	irgsp1_rep	mRNA	3897476	3900527	.	-	.	ID=Os09t0251100-00;Name=Os09t0251100-00;Locus_id=Os09g0251100;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK353588 (DDBJ);ORF_evidence=NP_001175734.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os09t0251100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	3898458	3900527	.	-	0	Parent=Os09t0251100-00
Chr09	irgsp1_rep	three_prime_UTR	3898444	3898457	.	-	.	Parent=Os09t0251100-00
Chr09	irgsp1_rep	three_prime_UTR	3897476	3897759	.	-	.	Parent=Os09t0251100-00
Chr09	irgsp1_rep	mRNA	3930166	3930539	.	+	.	ID=Os09t0251400-01;Name=Os09t0251400-01;Locus_id=Os09g0251400;Note=Non-protein coding transcript.;Transcript_evidence=AK059379 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-026-F12;TENOR=Os09t0251400-01
Chr09	irgsp1_rep	exon	3930166	3930539	.	+	.	Parent=Os09t0251400-01
Chr09	irgsp1_rep	mRNA	3933261	3935104	.	-	.	ID=Os09t0251450-00;Name=Os09t0251450-00;Locus_id=Os09g0251450;Note=Similar to Coatomer subunit zeta-2.;Transcript_evidence=FP092594 (DDBJ);ORF_evidence=Q6Z844 (UniProt);TENOR=Os09t0251450-00
Chr09	irgsp1_rep	five_prime_UTR	3935084	3935104	.	-	.	Parent=Os09t0251450-00
Chr09	irgsp1_rep	CDS	3934969	3935083	.	-	0	Parent=Os09t0251450-00
Chr09	irgsp1_rep	CDS	3934750	3934883	.	-	2	Parent=Os09t0251450-00
Chr09	irgsp1_rep	three_prime_UTR	3934694	3934749	.	-	.	Parent=Os09t0251450-00
Chr09	irgsp1_rep	three_prime_UTR	3933553	3933731	.	-	.	Parent=Os09t0251450-00
Chr09	irgsp1_rep	three_prime_UTR	3933261	3933377	.	-	.	Parent=Os09t0251450-00
Chr09	irgsp1_rep	mRNA	3935206	3938411	.	-	.	ID=Os09t0251500-01;Name=Os09t0251500-01;Locus_id=Os09g0251500;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK119343 (DDBJ%2C Best hit);ORF_evidence=NP_001172331.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-131-D11;Expression=AK119343;TENOR=Os09t0251500-01;KEGG=Os09t0251500-01
Chr09	irgsp1_rep	five_prime_UTR	3938105	3938411	.	-	.	Parent=Os09t0251500-01
Chr09	irgsp1_rep	CDS	3935471	3938104	.	-	0	Parent=Os09t0251500-01
Chr09	irgsp1_rep	three_prime_UTR	3935206	3935470	.	-	.	Parent=Os09t0251500-01
Chr09	irgsp1_rep	mRNA	3935475	3937751	.	+	.	ID=Os09t0251650-00;Name=Os09t0251650-00;Locus_id=Os09g0251650;Note=Hypothetical protein.;Transcript_evidence=BT084741 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0251650-00
Chr09	irgsp1_rep	five_prime_UTR	3935475	3936191	.	+	.	Parent=Os09t0251650-00
Chr09	irgsp1_rep	CDS	3936192	3936458	.	+	0	Parent=Os09t0251650-00
Chr09	irgsp1_rep	three_prime_UTR	3936459	3936660	.	+	.	Parent=Os09t0251650-00
Chr09	irgsp1_rep	three_prime_UTR	3937268	3937751	.	+	.	Parent=Os09t0251650-00
Chr09	irgsp1_rep	mRNA	3949859	3953247	.	+	.	ID=Os09t0251800-01;Name=Os09t0251800-01;Locus_id=Os09g0251800;Note=C2 calcium-dependent membrane targeting domain containing protein.;Transcript_evidence=AK061218 (DDBJ%2C Best hit),AK104010 (DDBJ%2C Best hit);ORF_evidence=B4FU66 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),C2 membrane targeting protein (IPR018029),C2 region (IPR020477);NIAS_FLcDNA=006-210-E07,001-004-C07;TENOR=Os09t0251800-01
Chr09	irgsp1_rep	five_prime_UTR	3949859	3950055	.	+	.	Parent=Os09t0251800-01
Chr09	irgsp1_rep	CDS	3950056	3950187	.	+	0	Parent=Os09t0251800-01
Chr09	irgsp1_rep	CDS	3952002	3952097	.	+	0	Parent=Os09t0251800-01
Chr09	irgsp1_rep	CDS	3952672	3952959	.	+	0	Parent=Os09t0251800-01
Chr09	irgsp1_rep	three_prime_UTR	3952960	3953247	.	+	.	Parent=Os09t0251800-01
Chr09	irgsp1_rep	mRNA	3959991	3964671	.	+	.	ID=Os09t0252000-00;Name=Os09t0252000-00;Locus_id=Os09g0252000;Note=Similar to Exosome complex exonuclease RRP41.;Transcript_evidence=AK332887 (DDBJ);ORF_evidence=NP_001131612.1 (RefSeq);GO=Biological Process: RNA processing (GO:0006396),Molecular Function: RNA binding (GO:0003723);InterPro=Exoribonuclease%2C phosphorolytic domain 1 (IPR001247),Exoribonuclease%2C phosphorolytic domain 2 (IPR015847),Ribosomal protein S5 domain 2-type fold (IPR020568);TENOR=Os09t0252000-00;KEGG=Os09t0252000-00
Chr09	irgsp1_rep	five_prime_UTR	3959991	3959997	.	+	.	Parent=Os09t0252000-00
Chr09	irgsp1_rep	CDS	3959998	3960054	.	+	0	Parent=Os09t0252000-00
Chr09	irgsp1_rep	CDS	3960149	3960195	.	+	0	Parent=Os09t0252000-00
Chr09	irgsp1_rep	CDS	3960303	3960363	.	+	1	Parent=Os09t0252000-00
Chr09	irgsp1_rep	CDS	3960979	3961020	.	+	0	Parent=Os09t0252000-00
Chr09	irgsp1_rep	CDS	3961098	3961165	.	+	0	Parent=Os09t0252000-00
Chr09	irgsp1_rep	CDS	3961709	3961787	.	+	1	Parent=Os09t0252000-00
Chr09	irgsp1_rep	CDS	3961873	3961909	.	+	0	Parent=Os09t0252000-00
Chr09	irgsp1_rep	CDS	3962236	3962352	.	+	2	Parent=Os09t0252000-00
Chr09	irgsp1_rep	CDS	3962435	3962520	.	+	2	Parent=Os09t0252000-00
Chr09	irgsp1_rep	CDS	3962740	3962829	.	+	0	Parent=Os09t0252000-00
Chr09	irgsp1_rep	CDS	3964600	3964644	.	+	0	Parent=Os09t0252000-00
Chr09	irgsp1_rep	three_prime_UTR	3964645	3964671	.	+	.	Parent=Os09t0252000-00
Chr09	irgsp1_rep	mRNA	3970178	3975732	.	+	.	ID=Os09t0252100-01;Name=Os09t0252100-01;Locus_id=Os09g0252100;Note=Similar to Acetyl-CoA C-acetyltransferase.;Transcript_evidence=AK102536 (DDBJ%2C Best hit);ORF_evidence=NP_001148667.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Thiolase (IPR002155),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039),Thiolase%2C active site (IPR020610),Thiolase%2C conserved site (IPR020613),Thiolase%2C N-terminal (IPR020616),Thiolase%2C C-terminal (IPR020617);NIAS_FLcDNA=J033096I21;Expression=AK102536;TENOR=Os09t0252100-01;KEGG=Os09t0252100-01 (EC:2.3.1.9)
Chr09	irgsp1_rep	five_prime_UTR	3970178	3970280	.	+	.	Parent=Os09t0252100-01
Chr09	irgsp1_rep	five_prime_UTR	3970527	3970560	.	+	.	Parent=Os09t0252100-01
Chr09	irgsp1_rep	CDS	3970561	3970588	.	+	0	Parent=Os09t0252100-01
Chr09	irgsp1_rep	CDS	3970948	3971046	.	+	2	Parent=Os09t0252100-01
Chr09	irgsp1_rep	CDS	3971131	3971304	.	+	2	Parent=Os09t0252100-01
Chr09	irgsp1_rep	CDS	3971395	3971500	.	+	2	Parent=Os09t0252100-01
Chr09	irgsp1_rep	CDS	3971859	3971997	.	+	1	Parent=Os09t0252100-01
Chr09	irgsp1_rep	CDS	3972645	3972722	.	+	0	Parent=Os09t0252100-01
Chr09	irgsp1_rep	CDS	3973051	3973116	.	+	0	Parent=Os09t0252100-01
Chr09	irgsp1_rep	CDS	3973401	3973486	.	+	0	Parent=Os09t0252100-01
Chr09	irgsp1_rep	CDS	3974127	3974226	.	+	1	Parent=Os09t0252100-01
Chr09	irgsp1_rep	CDS	3974433	3974543	.	+	0	Parent=Os09t0252100-01
Chr09	irgsp1_rep	CDS	3974645	3974686	.	+	0	Parent=Os09t0252100-01
Chr09	irgsp1_rep	CDS	3974859	3974945	.	+	0	Parent=Os09t0252100-01
Chr09	irgsp1_rep	CDS	3975201	3975290	.	+	0	Parent=Os09t0252100-01
Chr09	irgsp1_rep	three_prime_UTR	3975291	3975298	.	+	.	Parent=Os09t0252100-01
Chr09	irgsp1_rep	three_prime_UTR	3975396	3975732	.	+	.	Parent=Os09t0252100-01
Chr09	irgsp1_rep	mRNA	3970956	3975826	.	+	.	ID=Os09t0252100-02;Name=Os09t0252100-02;Locus_id=Os09g0252100;Note=Similar to Acetyl-CoA acetyltransferase%2C cytosolic 1.;Transcript_evidence=AK059654 (DDBJ%2C Best hit);ORF_evidence=B6TCA2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Thiolase (IPR002155),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039),Thiolase%2C active site (IPR020610),Thiolase%2C conserved site (IPR020613),Thiolase%2C N-terminal (IPR020616),Thiolase%2C C-terminal (IPR020617);NIAS_FLcDNA=001-031-C10;Expression=AK059654;TENOR=Os09t0252100-02;KEGG=Os09t0252100-02 (EC:2.3.1.9)
Chr09	irgsp1_rep	CDS	3970956	3971046	.	+	0	Parent=Os09t0252100-02
Chr09	irgsp1_rep	CDS	3971131	3971304	.	+	2	Parent=Os09t0252100-02
Chr09	irgsp1_rep	CDS	3971395	3971500	.	+	2	Parent=Os09t0252100-02
Chr09	irgsp1_rep	CDS	3971859	3971997	.	+	1	Parent=Os09t0252100-02
Chr09	irgsp1_rep	CDS	3972645	3972722	.	+	0	Parent=Os09t0252100-02
Chr09	irgsp1_rep	CDS	3973051	3973116	.	+	0	Parent=Os09t0252100-02
Chr09	irgsp1_rep	CDS	3973401	3973486	.	+	0	Parent=Os09t0252100-02
Chr09	irgsp1_rep	CDS	3974127	3974226	.	+	1	Parent=Os09t0252100-02
Chr09	irgsp1_rep	CDS	3974433	3974543	.	+	0	Parent=Os09t0252100-02
Chr09	irgsp1_rep	CDS	3974645	3974686	.	+	0	Parent=Os09t0252100-02
Chr09	irgsp1_rep	CDS	3974859	3974945	.	+	0	Parent=Os09t0252100-02
Chr09	irgsp1_rep	CDS	3975201	3975290	.	+	0	Parent=Os09t0252100-02
Chr09	irgsp1_rep	three_prime_UTR	3975291	3975298	.	+	.	Parent=Os09t0252100-02
Chr09	irgsp1_rep	three_prime_UTR	3975396	3975826	.	+	.	Parent=Os09t0252100-02
Chr09	irgsp1_rep	mRNA	4020411	4024072	.	+	.	ID=Os09t0252700-01;Name=Os09t0252700-01;Locus_id=Os09g0252700;Note=Similar to E3 ubiquitin protein ligase UPL1 (EC 6.3.2.-) (Ubiquitin-protein ligase 1).;Transcript_evidence=AK101283 (DDBJ%2C Best hit);ORF_evidence=Q8GY23 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal (IPR000449),Ubiquitin interacting motif (IPR003903),UBA-like (IPR009060),E3 ubiquitin ligase%2C domain of unknown function DUF908 (IPR010309),E3 ubiquitin ligase%2C domain of unknown function DUF913 (IPR010314),Armadillo-like helical (IPR011989),Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (IPR015940),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033033D19;TENOR=Os09t0252700-01
Chr09	irgsp1_rep	five_prime_UTR	4020411	4020411	.	+	.	Parent=Os09t0252700-01
Chr09	irgsp1_rep	CDS	4020412	4024072	.	+	0	Parent=Os09t0252700-01
Chr09	irgsp1_rep	mRNA	4026528	4033967	.	+	.	ID=Os09t0252800-01;Name=Os09t0252800-01;Locus_id=Os09g0252800;Note=HECT domain containing protein.;Transcript_evidence=AK070046 (DDBJ%2C Best hit);ORF_evidence=Q6K3Y7 (UniProt);GO=Biological Process: protein modification process (GO:0006464),Cellular Component: intracellular (GO:0005622),Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=HECT (IPR000569);NIAS_FLcDNA=J023039K21;TENOR=Os09t0252800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	4026528	4026528	.	+	.	Parent=Os09t0252800-01
Chr09	irgsp1_rep	CDS	4026529	4027767	.	+	0	Parent=Os09t0252800-01
Chr09	irgsp1_rep	CDS	4027853	4028170	.	+	0	Parent=Os09t0252800-01
Chr09	irgsp1_rep	CDS	4028753	4028951	.	+	0	Parent=Os09t0252800-01
Chr09	irgsp1_rep	CDS	4029125	4029390	.	+	2	Parent=Os09t0252800-01
Chr09	irgsp1_rep	CDS	4029476	4029762	.	+	0	Parent=Os09t0252800-01
Chr09	irgsp1_rep	CDS	4030902	4032006	.	+	1	Parent=Os09t0252800-01
Chr09	irgsp1_rep	CDS	4032088	4032234	.	+	0	Parent=Os09t0252800-01
Chr09	irgsp1_rep	CDS	4032334	4032414	.	+	0	Parent=Os09t0252800-01
Chr09	irgsp1_rep	CDS	4032503	4032728	.	+	0	Parent=Os09t0252800-01
Chr09	irgsp1_rep	CDS	4032810	4032949	.	+	2	Parent=Os09t0252800-01
Chr09	irgsp1_rep	CDS	4033727	4033833	.	+	0	Parent=Os09t0252800-01
Chr09	irgsp1_rep	CDS	4033927	4033967	.	+	1	Parent=Os09t0252800-01
Chr09	irgsp1_rep	mRNA	4031407	4035575	.	+	.	ID=Os09t0252800-02;Name=Os09t0252800-02;Locus_id=Os09g0252800;Note=Similar to predicted protein.;Transcript_evidence=AK060465 (DDBJ%2C Best hit);ORF_evidence=B9G2D0 (UniProt);GO=Biological Process: protein modification process (GO:0006464),Cellular Component: intracellular (GO:0005622),Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=HECT (IPR000569);NIAS_FLcDNA=001-012-C10;Expression=AK060465;TENOR=Os09t0252800-02;KEGG=Os09t0252800-02 (EC:6.3.2.19)
Chr09	irgsp1_rep	CDS	4031407	4032006	.	+	0	Parent=Os09t0252800-02
Chr09	irgsp1_rep	CDS	4032088	4032234	.	+	0	Parent=Os09t0252800-02
Chr09	irgsp1_rep	CDS	4032334	4032414	.	+	0	Parent=Os09t0252800-02
Chr09	irgsp1_rep	CDS	4032503	4032728	.	+	0	Parent=Os09t0252800-02
Chr09	irgsp1_rep	CDS	4032810	4032949	.	+	2	Parent=Os09t0252800-02
Chr09	irgsp1_rep	CDS	4033727	4033833	.	+	0	Parent=Os09t0252800-02
Chr09	irgsp1_rep	CDS	4033927	4034029	.	+	1	Parent=Os09t0252800-02
Chr09	irgsp1_rep	three_prime_UTR	4034030	4034090	.	+	.	Parent=Os09t0252800-02
Chr09	irgsp1_rep	three_prime_UTR	4035244	4035575	.	+	.	Parent=Os09t0252800-02
Chr09	irgsp1_rep	mRNA	4042647	4045407	.	+	.	ID=Os09t0253000-01;Name=Os09t0253000-01;Locus_id=Os09g0253000;Note=Similar to NOI protein.;Transcript_evidence=AK120347 (DDBJ%2C Best hit);ORF_evidence=O22634 (UniProt);InterPro=Pathogenic type III effector avirulence factor Avr cleavage site (IPR008700);NIAS_FLcDNA=J013064B01;Expression=AK120347;TENOR=Os09t0253000-01;KEGG=Os09t0253000-01
Chr09	irgsp1_rep	five_prime_UTR	4042647	4042759	.	+	.	Parent=Os09t0253000-01
Chr09	irgsp1_rep	CDS	4042760	4042768	.	+	0	Parent=Os09t0253000-01
Chr09	irgsp1_rep	CDS	4044048	4044242	.	+	0	Parent=Os09t0253000-01
Chr09	irgsp1_rep	CDS	4045147	4045191	.	+	0	Parent=Os09t0253000-01
Chr09	irgsp1_rep	three_prime_UTR	4045192	4045407	.	+	.	Parent=Os09t0253000-01
Chr09	irgsp1_rep	mRNA	4100046	4100458	.	-	.	ID=Os09t0253775-00;Name=Os09t0253775-00;Locus_id=Os09g0253775;Note=Hypothetical protein.;Transcript_evidence=AK372466 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0253775-00
Chr09	irgsp1_rep	CDS	4100046	4100458	.	-	0	Parent=Os09t0253775-00
Chr09	irgsp1_rep	mRNA	4105156	4105993	.	+	.	ID=Os09t0254050-00;Name=Os09t0254050-00;Locus_id=Os09g0254050;Note=Similar to seven-transmembrane-domain protein 1.;Transcript_evidence=AK376832 (DDBJ);ORF_evidence=Q0J349 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=RAG1-activating protein-1-related (IPR004316);TENOR=Os09t0254050-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	4105156	4105261	.	+	.	Parent=Os09t0254050-00
Chr09	irgsp1_rep	CDS	4105262	4105837	.	+	0	Parent=Os09t0254050-00
Chr09	irgsp1_rep	three_prime_UTR	4105838	4105993	.	+	.	Parent=Os09t0254050-00
Chr09	irgsp1_rep	mRNA	4135649	4136547	.	+	.	ID=Os09t0254600-00;Name=Os09t0254600-00;Locus_id=Os09g0254600;CGSNL Gene Symbol=SWEET7A;CGSNL Gene Name=SWEET7A;Oryzabase Gene Symbol Synonym(s)=OsSWEET7a%2C SWEET7a;Note=Similar to seven-transmembrane-domain protein 1.;Transcript_evidence=EU967998 (DDBJ);ORF_evidence=Q0J349 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=RAG1-activating protein-1-related (IPR004316);Oryzabase=9098;TENOR=Os09t0254600-00;KEGG=Os09t0254600-00
Chr09	irgsp1_rep	five_prime_UTR	4135649	4135770	.	+	.	Parent=Os09t0254600-00
Chr09	irgsp1_rep	CDS	4135771	4136547	.	+	0	Parent=Os09t0254600-00
Chr09	irgsp1_rep	mRNA	4165397	4170918	.	+	.	ID=Os09t0255000-01;Name=Os09t0255000-01;Locus_id=Os09g0255000;Oryzabase Gene Symbol Synonym(s)=OSINV1%2C OsINV1%2C INV1%2C OsCIN7%2C OsCIN8;Oryzabase Gene Name Synonym(s)=cell wall invertase 1%2C cell-wall invertase 7%2C cell-wall invertase 8;Note=Similar to Cell wall invertase (EC 3.2.1.26).;Transcript_evidence=AK069080 (DDBJ%2C Best hit);ORF_evidence=Q0J360 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 32 (IPR001362),Concanavalin A-like lectin/glucanase (IPR008985),Glycosyl hydrolases family 32%2C N-terminal (IPR013148),Glycosyl hydrolase family 32%2C C-terminal (IPR013189),Glycosyl hydrolase family 43%2C five-bladed beta-propellor domain (IPR023296);NIAS_FLcDNA=J023004I08;Oryzabase=11686;Expression=AK069080;TENOR=Os09t0255000-01;KEGG=Os09t0255000-01 (EC:3.2.1.26)
Chr09	irgsp1_rep	five_prime_UTR	4165397	4165520	.	+	.	Parent=Os09t0255000-01
Chr09	irgsp1_rep	CDS	4165521	4165680	.	+	0	Parent=Os09t0255000-01
Chr09	irgsp1_rep	CDS	4165840	4165848	.	+	2	Parent=Os09t0255000-01
Chr09	irgsp1_rep	CDS	4168954	4170232	.	+	2	Parent=Os09t0255000-01
Chr09	irgsp1_rep	CDS	4170301	4170394	.	+	1	Parent=Os09t0255000-01
Chr09	irgsp1_rep	CDS	4170485	4170733	.	+	0	Parent=Os09t0255000-01
Chr09	irgsp1_rep	three_prime_UTR	4170734	4170918	.	+	.	Parent=Os09t0255000-01
Chr09	irgsp1_rep	mRNA	4168949	4170013	.	-	.	ID=Os09t0255101-00;Name=Os09t0255101-00;Locus_id=Os09g0255101;Note=Hypothetical conserved gene.;Transcript_evidence=AK108794 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;Expression=AK108794;TENOR=Os09t0255101-00;KEGG=Os09t0255101-00
Chr09	irgsp1_rep	five_prime_UTR	4169830	4170013	.	-	.	Parent=Os09t0255101-00
Chr09	irgsp1_rep	CDS	4169281	4169829	.	-	0	Parent=Os09t0255101-00
Chr09	irgsp1_rep	three_prime_UTR	4168949	4169280	.	-	.	Parent=Os09t0255101-00
Chr09	irgsp1_rep	mRNA	4175710	4176073	.	-	.	ID=Os09t0255200-00;Name=Os09t0255200-00;Locus_id=Os09g0255200;Note=Putative cysteine proteinase inhibitor 11.;Transcript_evidence=FP097655 (DDBJ);ORF_evidence=A3BWJ2 (UniProt);GO=Molecular Function: cysteine-type endopeptidase inhibitor activity (GO:0004869);InterPro=Proteinase inhibitor I25%2C cystatin (IPR000010),Proteinase inhibitor I25%2C cystatin%2C conserved site (IPR018073),Proteinase inhibitor I25%2C cystatin%2C conserved region (IPR020381);TENOR=Os09t0255200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	4175711	4176073	.	-	0	Parent=Os09t0255200-00
Chr09	irgsp1_rep	three_prime_UTR	4175710	4175710	.	-	.	Parent=Os09t0255200-00
Chr09	irgsp1_rep	mRNA	4190886	4198627	.	+	.	ID=Os09t0255300-00;Name=Os09t0255300-00;Locus_id=Os09g0255300;Note=Glycoside hydrolase%2C family 32 protein.;Transcript_evidence=AY578165 (DDBJ%2C Best hit);ORF_evidence=A2YZ01 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 32 (IPR001362),Concanavalin A-like lectin/glucanase (IPR008985),Glycosyl hydrolases family 32%2C N-terminal (IPR013148),Glycosyl hydrolase family 43%2C five-bladed beta-propellor domain (IPR023296);TENOR=Os09t0255300-00;KEGG=Os09t0255300-00
Chr09	irgsp1_rep	CDS	4190886	4191045	.	+	0	Parent=Os09t0255300-00
Chr09	irgsp1_rep	CDS	4191204	4191212	.	+	2	Parent=Os09t0255300-00
Chr09	irgsp1_rep	CDS	4197258	4198012	.	+	2	Parent=Os09t0255300-00
Chr09	irgsp1_rep	CDS	4198129	4198308	.	+	0	Parent=Os09t0255300-00
Chr09	irgsp1_rep	CDS	4198379	4198627	.	+	0	Parent=Os09t0255300-00
Chr09	irgsp1_rep	mRNA	4197229	4198319	.	-	.	ID=Os09t0255333-01;Name=Os09t0255333-01;Locus_id=Os09g0255333;Note=Hypothetical gene.;Transcript_evidence=AK108794 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-151-B10;Expression=AK108794;TENOR=Os09t0255333-01;KEGG=Os09t0255333-01
Chr09	irgsp1_rep	CDS	4197585	4198319	.	-	0	Parent=Os09t0255333-01
Chr09	irgsp1_rep	three_prime_UTR	4197229	4197584	.	-	.	Parent=Os09t0255333-01
Chr09	irgsp1_rep	mRNA	4198441	4198689	.	-	.	ID=Os09t0255366-00;Name=Os09t0255366-00;Locus_id=Os09g0255366;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os09t0255366-00
Chr09	irgsp1_rep	CDS	4198441	4198689	.	-	0	Parent=Os09t0255366-00
Chr09	irgsp1_rep	mRNA	4201077	4204423	.	-	.	ID=Os09t0255400-01;Name=Os09t0255400-01;Locus_id=Os09g0255400;Oryzabase Gene Symbol Synonym(s)=IGPS;Oryzabase Gene Name Synonym(s)=indole-3-glycerol phosphate synthase;Note=Similar to Indole-3-glycerol phosphate synthase%2C chloroplast precursor (EC 4.1.1.48) (IGPS).;Transcript_evidence=AK071383 (DDBJ%2C Best hit);ORF_evidence=C8TFG9 (UniProt);GO=Biological Process: tryptophan metabolic process (GO:0006568),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: indole-3-glycerol-phosphate synthase activity (GO:0004425);InterPro=Indole-3-glycerol phosphate synthase%2C conserved site (IPR001468),Ribulose-phosphate binding barrel (IPR011060),Aldolase-type TIM barrel (IPR013785),Indole-3-glycerol phosphate synthase (IPR013798);NIAS_FLcDNA=J023092E01;Oryzabase=16775;Expression=AK071383;TENOR=Os09t0255400-01;KEGG=Os09t0255400-01 (EC:4.1.1.48)
Chr09	irgsp1_rep	five_prime_UTR	4204372	4204423	.	-	.	Parent=Os09t0255400-01
Chr09	irgsp1_rep	CDS	4204225	4204371	.	-	0	Parent=Os09t0255400-01
Chr09	irgsp1_rep	CDS	4203868	4204092	.	-	0	Parent=Os09t0255400-01
Chr09	irgsp1_rep	CDS	4203585	4203761	.	-	0	Parent=Os09t0255400-01
Chr09	irgsp1_rep	CDS	4203381	4203455	.	-	0	Parent=Os09t0255400-01
Chr09	irgsp1_rep	CDS	4203188	4203232	.	-	0	Parent=Os09t0255400-01
Chr09	irgsp1_rep	CDS	4202889	4203053	.	-	0	Parent=Os09t0255400-01
Chr09	irgsp1_rep	CDS	4202453	4202531	.	-	0	Parent=Os09t0255400-01
Chr09	irgsp1_rep	CDS	4202277	4202356	.	-	2	Parent=Os09t0255400-01
Chr09	irgsp1_rep	CDS	4201817	4201885	.	-	0	Parent=Os09t0255400-01
Chr09	irgsp1_rep	CDS	4201296	4201379	.	-	0	Parent=Os09t0255400-01
Chr09	irgsp1_rep	three_prime_UTR	4201077	4201295	.	-	.	Parent=Os09t0255400-01
Chr09	irgsp1_rep	mRNA	4201661	4204423	.	-	.	ID=Os09t0255400-02;Name=Os09t0255400-02;Locus_id=Os09g0255400;Oryzabase Gene Symbol Synonym(s)=IGPS;Oryzabase Gene Name Synonym(s)=indole-3-glycerol phosphate synthase;Note=Similar to indole-3-glycerol phosphate synthase.;Transcript_evidence=AK059358 (DDBJ%2C Best hit);ORF_evidence=NP_001152617.1 (RefSeq);GO=Biological Process: tryptophan metabolic process (GO:0006568),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: indole-3-glycerol-phosphate synthase activity (GO:0004425);InterPro=Indole-3-glycerol phosphate synthase%2C conserved site (IPR001468),Ribulose-phosphate binding barrel (IPR011060),Aldolase-type TIM barrel (IPR013785),Indole-3-glycerol phosphate synthase (IPR013798);NIAS_FLcDNA=001-026-D08;Oryzabase=16775;Expression=AK059358;TENOR=Os09t0255400-02;KEGG=Os09t0255400-02 (EC:4.1.1.48)
Chr09	irgsp1_rep	five_prime_UTR	4204372	4204423	.	-	.	Parent=Os09t0255400-02
Chr09	irgsp1_rep	CDS	4204225	4204371	.	-	0	Parent=Os09t0255400-02
Chr09	irgsp1_rep	CDS	4203868	4204092	.	-	0	Parent=Os09t0255400-02
Chr09	irgsp1_rep	CDS	4203585	4203761	.	-	0	Parent=Os09t0255400-02
Chr09	irgsp1_rep	CDS	4203381	4203455	.	-	0	Parent=Os09t0255400-02
Chr09	irgsp1_rep	CDS	4203188	4203232	.	-	0	Parent=Os09t0255400-02
Chr09	irgsp1_rep	CDS	4202889	4203053	.	-	0	Parent=Os09t0255400-02
Chr09	irgsp1_rep	CDS	4202453	4202531	.	-	0	Parent=Os09t0255400-02
Chr09	irgsp1_rep	CDS	4202277	4202356	.	-	2	Parent=Os09t0255400-02
Chr09	irgsp1_rep	CDS	4201721	4201885	.	-	0	Parent=Os09t0255400-02
Chr09	irgsp1_rep	three_prime_UTR	4201661	4201720	.	-	.	Parent=Os09t0255400-02
Chr09	irgsp1_rep	mRNA	4202461	4203765	.	+	.	ID=Os09t0255600-00;Name=Os09t0255600-00;Locus_id=Os09g0255600;Note=Non-protein coding transcript.;Transcript_evidence=BT017430 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0255600-00
Chr09	irgsp1_rep	exon	4202461	4202542	.	+	.	Parent=Os09t0255600-00
Chr09	irgsp1_rep	exon	4202900	4203081	.	+	.	Parent=Os09t0255600-00
Chr09	irgsp1_rep	exon	4203366	4203464	.	+	.	Parent=Os09t0255600-00
Chr09	irgsp1_rep	exon	4203595	4203765	.	+	.	Parent=Os09t0255600-00
Chr09	irgsp1_rep	mRNA	4227428	4229452	.	-	.	ID=Os09t0255800-01;Name=Os09t0255800-01;Locus_id=Os09g0255800;Note=Hypothetical protein.;Transcript_evidence=AK106263 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-100-F09;TENOR=Os09t0255800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	4228934	4229452	.	-	0	Parent=Os09t0255800-01
Chr09	irgsp1_rep	three_prime_UTR	4227428	4228933	.	-	.	Parent=Os09t0255800-01
Chr09	irgsp1_rep	mRNA	4227927	4229757	.	+	.	ID=Os09t0255900-01;Name=Os09t0255900-01;Locus_id=Os09g0255900;Note=Protein of unknown function DUF247%2C plant family protein.;Transcript_evidence=AK101561 (DDBJ%2C Best hit);ORF_evidence=A2YZ05 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);NIAS_FLcDNA=J033050D17;Expression=AK101561;TENOR=Os09t0255900-01;KEGG=Os09t0255900-01
Chr09	irgsp1_rep	five_prime_UTR	4227927	4227928	.	+	.	Parent=Os09t0255900-01
Chr09	irgsp1_rep	CDS	4227929	4229605	.	+	0	Parent=Os09t0255900-01
Chr09	irgsp1_rep	three_prime_UTR	4229606	4229757	.	+	.	Parent=Os09t0255900-01
Chr09	irgsp1_rep	mRNA	4250749	4251832	.	+	.	ID=Os09t0256100-00;Name=Os09t0256100-00;Locus_id=Os09g0256100;Note=Similar to flavonol 4-sulfotransferase.;Transcript_evidence=FP098644 (DDBJ);ORF_evidence=NP_001150618.1 (RefSeq);GO=Molecular Function: sulfotransferase activity (GO:0008146);InterPro=Sulfotransferase domain (IPR000863);TENOR=Os09t0256100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	4250749	4250904	.	+	.	Parent=Os09t0256100-00
Chr09	irgsp1_rep	CDS	4250905	4251759	.	+	0	Parent=Os09t0256100-00
Chr09	irgsp1_rep	three_prime_UTR	4251760	4251832	.	+	.	Parent=Os09t0256100-00
Chr09	irgsp1_rep	mRNA	4274475	4274530	.	+	.	ID=Os09t0256350-00;Name=Os09t0256350-00;Locus_id=Os09g0256350;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0256350-00
Chr09	irgsp1_rep	exon	4274475	4274530	.	+	.	Parent=Os09t0256350-00
Chr09	irgsp1_rep	mRNA	4275739	4276116	.	-	.	ID=Os09t0256600-00;Name=Os09t0256600-00;Locus_id=Os09g0256600;Note=Similar to seven-transmembrane-domain protein 1.;Transcript_evidence=EU944316 (DDBJ);ORF_evidence=Q0J349 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=RAG1-activating protein-1-related (IPR004316);TENOR=Os09t0256600-00;KEGG=Os09t0256600-00
Chr09	irgsp1_rep	CDS	4275781	4276116	.	-	0	Parent=Os09t0256600-00
Chr09	irgsp1_rep	three_prime_UTR	4275739	4275780	.	-	.	Parent=Os09t0256600-00
Chr09	irgsp1_rep	mRNA	4276123	4276419	.	-	.	ID=Os09t0256650-00;Name=Os09t0256650-00;Locus_id=Os09g0256650;CGSNL Gene Symbol=SWEET7E;CGSNL Gene Name=SWEET7E;Oryzabase Gene Symbol Synonym(s)=OsSWEET7e%2C SWEET7e;Note=Putative bidirectional sugar transporter SWEET7e.;Transcript_evidence=A3BWJ9 (UniProt);ORF_evidence=A3BWJ9 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=RAG1-activating protein-1-related (IPR004316);Oryzabase=9102;TENOR=Os09t0256650-00
Chr09	irgsp1_rep	CDS	4276123	4276419	.	-	0	Parent=Os09t0256650-00
Chr09	irgsp1_rep	mRNA	4277193	4277778	.	-	.	ID=Os09t0256700-01;Name=Os09t0256700-01;Locus_id=Os09g0256700;Oryzabase Gene Symbol Synonym(s)=OsEnS-125;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 125;Note=Conserved hypothetical protein.;Transcript_evidence=AK119936 (DDBJ%2C Best hit);ORF_evidence=A2YZ08 (UniProt);NIAS_FLcDNA=002-184-A12;Oryzabase=18417;Expression=AK119936;TENOR=Os09t0256700-01;KEGG=Os09t0256700-01
Chr09	irgsp1_rep	five_prime_UTR	4277735	4277778	.	-	.	Parent=Os09t0256700-01
Chr09	irgsp1_rep	CDS	4277447	4277734	.	-	0	Parent=Os09t0256700-01
Chr09	irgsp1_rep	three_prime_UTR	4277193	4277446	.	-	.	Parent=Os09t0256700-01
Chr09	irgsp1_rep	mRNA	4290126	4291301	.	+	.	ID=Os09t0257000-00;Name=Os09t0257000-00;Locus_id=Os09g0257000;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A3BWK1 (UniProt);TENOR=Os09t0257000-00;KEGG=Os09t0257000-00
Chr09	irgsp1_rep	CDS	4290126	4291301	.	+	0	Parent=Os09t0257000-00
Chr09	irgsp1_rep	mRNA	4347776	4348228	.	-	.	ID=Os09t0257900-01;Name=Os09t0257900-01;Locus_id=Os09g0257900;Note=Conserved hypothetical protein.;Transcript_evidence=AK071084 (DDBJ%2C Best hit);ORF_evidence=A3BWK4 (UniProt);NIAS_FLcDNA=J023078J10;Expression=AK071084;TENOR=Os09t0257900-01;KEGG=Os09t0257900-01
Chr09	irgsp1_rep	five_prime_UTR	4348101	4348228	.	-	.	Parent=Os09t0257900-01
Chr09	irgsp1_rep	CDS	4347912	4348100	.	-	0	Parent=Os09t0257900-01
Chr09	irgsp1_rep	three_prime_UTR	4347776	4347911	.	-	.	Parent=Os09t0257900-01
Chr09	irgsp1_rep	mRNA	4349684	4355176	.	-	.	ID=Os09t0258000-01;Name=Os09t0258000-01;Locus_id=Os09g0258000;Note=Cellular retinaldehyde-binding/triple function%2C C-terminal domain containing protein.;Transcript_evidence=AK061499 (DDBJ%2C Best hit),AK104755 (DDBJ%2C Best hit);ORF_evidence=O48939 (UniProt);InterPro=Cellular retinaldehyde-binding/triple function%2C C-terminal (IPR001251),Cellular retinaldehyde-binding/triple function%2C N-terminal (IPR008273),Phosphatidylinositol transfer protein-like%2C N-terminal (IPR011074);NIAS_FLcDNA=006-309-D09,001-038-G03;Expression=AK061499;TENOR=Os09t0258000-01;KEGG=Os09t0258000-01
Chr09	irgsp1_rep	five_prime_UTR	4354909	4355176	.	-	.	Parent=Os09t0258000-01
Chr09	irgsp1_rep	CDS	4354854	4354908	.	-	0	Parent=Os09t0258000-01
Chr09	irgsp1_rep	CDS	4354645	4354673	.	-	2	Parent=Os09t0258000-01
Chr09	irgsp1_rep	CDS	4352893	4352976	.	-	0	Parent=Os09t0258000-01
Chr09	irgsp1_rep	CDS	4352765	4352818	.	-	0	Parent=Os09t0258000-01
Chr09	irgsp1_rep	CDS	4352418	4352495	.	-	0	Parent=Os09t0258000-01
Chr09	irgsp1_rep	CDS	4352130	4352183	.	-	0	Parent=Os09t0258000-01
Chr09	irgsp1_rep	CDS	4351812	4351871	.	-	0	Parent=Os09t0258000-01
Chr09	irgsp1_rep	CDS	4351641	4351736	.	-	0	Parent=Os09t0258000-01
Chr09	irgsp1_rep	CDS	4351006	4351107	.	-	0	Parent=Os09t0258000-01
Chr09	irgsp1_rep	CDS	4350804	4350884	.	-	0	Parent=Os09t0258000-01
Chr09	irgsp1_rep	CDS	4350126	4350440	.	-	0	Parent=Os09t0258000-01
Chr09	irgsp1_rep	three_prime_UTR	4349684	4350125	.	-	.	Parent=Os09t0258000-01
Chr09	irgsp1_rep	mRNA	4349564	4355175	.	-	.	ID=Os09t0258000-02;Name=Os09t0258000-02;Locus_id=Os09g0258000;Note=Similar to predicted protein.;Transcript_evidence=AK067978 (DDBJ%2C Best hit);ORF_evidence=O48939 (UniProt);InterPro=Cellular retinaldehyde-binding/triple function%2C N-terminal (IPR008273),Phosphatidylinositol transfer protein-like%2C N-terminal (IPR011074);NIAS_FLcDNA=J013123M11;Expression=AK067978;TENOR=Os09t0258000-02;KEGG=Os09t0258000-02
Chr09	irgsp1_rep	five_prime_UTR	4354909	4355175	.	-	.	Parent=Os09t0258000-02
Chr09	irgsp1_rep	CDS	4354854	4354908	.	-	0	Parent=Os09t0258000-02
Chr09	irgsp1_rep	CDS	4354645	4354673	.	-	2	Parent=Os09t0258000-02
Chr09	irgsp1_rep	CDS	4352893	4352976	.	-	0	Parent=Os09t0258000-02
Chr09	irgsp1_rep	CDS	4352765	4352818	.	-	0	Parent=Os09t0258000-02
Chr09	irgsp1_rep	CDS	4352412	4352495	.	-	0	Parent=Os09t0258000-02
Chr09	irgsp1_rep	three_prime_UTR	4351812	4352411	.	-	.	Parent=Os09t0258000-02
Chr09	irgsp1_rep	three_prime_UTR	4351641	4351736	.	-	.	Parent=Os09t0258000-02
Chr09	irgsp1_rep	three_prime_UTR	4351006	4351107	.	-	.	Parent=Os09t0258000-02
Chr09	irgsp1_rep	three_prime_UTR	4350804	4350884	.	-	.	Parent=Os09t0258000-02
Chr09	irgsp1_rep	three_prime_UTR	4349564	4350440	.	-	.	Parent=Os09t0258000-02
Chr09	irgsp1_rep	mRNA	4382994	4386627	.	-	.	ID=Os09t0258500-01;Name=Os09t0258500-01;Locus_id=Os09g0258500;Note=Similar to Protein kinase (EC 2.7.1.-) (Clone OSPK 2.1) (Fragment).;Transcript_evidence=AK070835 (DDBJ%2C Best hit);ORF_evidence=B6SKG1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023075E03;Expression=AK070835;TENOR=Os09t0258500-01;KEGG=Os09t0258500-01
Chr09	irgsp1_rep	five_prime_UTR	4386303	4386627	.	-	.	Parent=Os09t0258500-01
Chr09	irgsp1_rep	five_prime_UTR	4386000	4386098	.	-	.	Parent=Os09t0258500-01
Chr09	irgsp1_rep	CDS	4385155	4385999	.	-	0	Parent=Os09t0258500-01
Chr09	irgsp1_rep	CDS	4383256	4384114	.	-	1	Parent=Os09t0258500-01
Chr09	irgsp1_rep	three_prime_UTR	4382994	4383255	.	-	.	Parent=Os09t0258500-01
Chr09	irgsp1_rep	mRNA	4390916	4393872	.	-	.	ID=Os09t0258600-01;Name=Os09t0258600-01;Locus_id=Os09g0258600;CGSNL Gene Symbol=RPL17;CGSNL Gene Name=RIBOSOMAL PROTEIN L17;Oryzabase Gene Symbol Synonym(s)=RPL22%2C OsRPL17%2C OsRPL22;Oryzabase Gene Name Synonym(s)=Ribosomal protein L17%2C Ribosomal protein L22;Note=Similar to 60S ribosomal protein L17-1.;Transcript_evidence=AK120273 (DDBJ%2C Best hit),AK072488 (DDBJ%2C Best hit),AK105087 (DDBJ%2C Best hit);ORF_evidence=B3TM07 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: large ribosomal subunit (GO:0015934),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L22/L17 (IPR001063),Ribosomal protein L22/L17%2C eukaryotic/archaeal (IPR005721),Ribosomal protein L22/L17%2C conserved site (IPR018260);NIAS_FLcDNA=J013048E22,J023134I03,001-047-A12;Oryzabase=17662;Expression=AK120273;TENOR=Os09t0258600-01;KEGG=Os09t0258600-01
Chr09	irgsp1_rep	five_prime_UTR	4393794	4393872	.	-	.	Parent=Os09t0258600-01
Chr09	irgsp1_rep	CDS	4393791	4393793	.	-	0	Parent=Os09t0258600-01
Chr09	irgsp1_rep	CDS	4393625	4393661	.	-	0	Parent=Os09t0258600-01
Chr09	irgsp1_rep	CDS	4393495	4393535	.	-	2	Parent=Os09t0258600-01
Chr09	irgsp1_rep	CDS	4391695	4391925	.	-	0	Parent=Os09t0258600-01
Chr09	irgsp1_rep	CDS	4391511	4391613	.	-	0	Parent=Os09t0258600-01
Chr09	irgsp1_rep	CDS	4391363	4391430	.	-	2	Parent=Os09t0258600-01
Chr09	irgsp1_rep	CDS	4391235	4391267	.	-	0	Parent=Os09t0258600-01
Chr09	irgsp1_rep	three_prime_UTR	4390916	4391234	.	-	.	Parent=Os09t0258600-01
Chr09	irgsp1_rep	mRNA	4401212	4401880	.	+	.	ID=Os09t0258700-00;Name=Os09t0258700-00;Locus_id=Os09g0258700;CGSNL Gene Symbol=SWEET7B;CGSNL Gene Name=SWEET7B;Oryzabase Gene Symbol Synonym(s)=OsSWEET7b%2C SWEET7b;Note=Bidirectional sugar transporter SWEET7b.;Transcript_evidence=Q0J349 (UniProt);ORF_evidence=Q0J349 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=RAG1-activating protein-1-related (IPR004316);Oryzabase=9099;TENOR=Os09t0258700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	4401212	4401880	.	+	0	Parent=Os09t0258700-00
Chr09	irgsp1_rep	mRNA	4425637	4426429	.	-	.	ID=Os09t0259000-00;Name=Os09t0259000-00;Locus_id=Os09g0259000;Note=Conserved hypothetical protein.;Transcript_evidence=FP093559 (DDBJ);ORF_evidence=A2X266 (UniProt);TENOR=Os09t0259000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	4426088	4426429	.	-	.	Parent=Os09t0259000-00
Chr09	irgsp1_rep	CDS	4425800	4426087	.	-	0	Parent=Os09t0259000-00
Chr09	irgsp1_rep	three_prime_UTR	4425637	4425799	.	-	.	Parent=Os09t0259000-00
Chr09	irgsp1_rep	mRNA	4429265	4430103	.	+	.	ID=Os09t0259200-00;Name=Os09t0259200-00;Locus_id=Os09g0259200;CGSNL Gene Symbol=SWEET7D;CGSNL Gene Name=SWEET7D;Oryzabase Gene Symbol Synonym(s)=OsSWEET7d%2C SWEET7d;Note=Similar to seven-transmembrane-domain protein 1.;Transcript_evidence=FP095208 (DDBJ);ORF_evidence=A2YZ24 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=RAG1-activating protein-1-related (IPR004316);Oryzabase=9101;TENOR=Os09t0259200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	4429265	4429378	.	+	.	Parent=Os09t0259200-00
Chr09	irgsp1_rep	CDS	4429379	4429921	.	+	0	Parent=Os09t0259200-00
Chr09	irgsp1_rep	three_prime_UTR	4429922	4430103	.	+	.	Parent=Os09t0259200-00
Chr09	irgsp1_rep	mRNA	4443720	4444850	.	-	.	ID=Os09t0259500-00;Name=Os09t0259500-00;Locus_id=Os09g0259500;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3BRD3 (UniProt);TENOR=Os09t0259500-00
Chr09	irgsp1_rep	CDS	4443720	4444850	.	-	0	Parent=Os09t0259500-00
Chr09	irgsp1_rep	mRNA	4459461	4460605	.	-	.	ID=Os09t0259701-00;Name=Os09t0259701-00;Locus_id=Os09g0259701;Note=Conserved hypothetical protein.;Transcript_evidence=EU964122 (DDBJ);ORF_evidence=Q6ZAX8 (UniProt);TENOR=Os09t0259701-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	4460152	4460605	.	-	.	Parent=Os09t0259701-00
Chr09	irgsp1_rep	five_prime_UTR	4460025	4460062	.	-	.	Parent=Os09t0259701-00
Chr09	irgsp1_rep	CDS	4459461	4460024	.	-	0	Parent=Os09t0259701-00
Chr09	irgsp1_rep	mRNA	4462316	4465026	.	+	.	ID=Os09t0260000-01;Name=Os09t0260000-01;Locus_id=Os09g0260000;Oryzabase Gene Symbol Synonym(s)=OsFbox468%2C Os_F0398;Oryzabase Gene Name Synonym(s)=F-box protein 468;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK241947 (DDBJ%2C Best hit),AK288004 (DDBJ%2C Best hit);ORF_evidence=NP_001062705.2 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J075090C14,J075110N13;Oryzabase=17238;TENOR=Os09t0260000-01;KEGG=Os09t0260000-01
Chr09	irgsp1_rep	five_prime_UTR	4462316	4462358	.	+	.	Parent=Os09t0260000-01
Chr09	irgsp1_rep	CDS	4462359	4463603	.	+	0	Parent=Os09t0260000-01
Chr09	irgsp1_rep	CDS	4464798	4464812	.	+	0	Parent=Os09t0260000-01
Chr09	irgsp1_rep	three_prime_UTR	4464813	4465026	.	+	.	Parent=Os09t0260000-01
Chr09	irgsp1_rep	mRNA	4467902	4468663	.	+	.	ID=Os09t0260200-00;Name=Os09t0260200-00;Locus_id=Os09g0260200;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001175739.1 (RefSeq);TENOR=Os09t0260200-00;KEGG=Os09t0260200-00
Chr09	irgsp1_rep	CDS	4467902	4468663	.	+	0	Parent=Os09t0260200-00
Chr09	irgsp1_rep	mRNA	4474949	4476159	.	+	.	ID=Os09t0260300-00;Name=Os09t0260300-00;Locus_id=Os09g0260300;Note=Conserved hypothetical protein.;Transcript_evidence=AK377064 (DDBJ);ORF_evidence=B9G2F0 (UniProt);TENOR=Os09t0260300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	4474949	4474995	.	+	.	Parent=Os09t0260300-00
Chr09	irgsp1_rep	CDS	4474996	4476159	.	+	0	Parent=Os09t0260300-00
Chr09	irgsp1_rep	mRNA	4491795	4494209	.	-	.	ID=Os09t0260900-01;Name=Os09t0260900-01;Locus_id=Os09g0260900;Note=Hypothetical gene.;Transcript_evidence=AK289040 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090091O20;TENOR=Os09t0260900-01;KEGG=Os09t0260900-01
Chr09	irgsp1_rep	five_prime_UTR	4492563	4494209	.	-	.	Parent=Os09t0260900-01
Chr09	irgsp1_rep	CDS	4492350	4492562	.	-	0	Parent=Os09t0260900-01
Chr09	irgsp1_rep	three_prime_UTR	4491795	4492349	.	-	.	Parent=Os09t0260900-01
Chr09	irgsp1_rep	mRNA	4502977	4506761	.	-	.	ID=Os09t0261100-01;Name=Os09t0261100-01;Locus_id=Os09g0261100;Oryzabase Gene Symbol Synonym(s)=OsFbox469%2C Os_F0272;Oryzabase Gene Name Synonym(s)=F-box protein 469;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK121607 (DDBJ%2C Best hit);ORF_evidence=B8BDH3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033042G23;Oryzabase=17239;Expression=AK121607;TENOR=Os09t0261100-01;KEGG=Os09t0261100-01
Chr09	irgsp1_rep	five_prime_UTR	4506754	4506761	.	-	.	Parent=Os09t0261100-01
Chr09	irgsp1_rep	CDS	4505542	4506753	.	-	0	Parent=Os09t0261100-01
Chr09	irgsp1_rep	CDS	4503235	4503249	.	-	0	Parent=Os09t0261100-01
Chr09	irgsp1_rep	three_prime_UTR	4502977	4503234	.	-	.	Parent=Os09t0261100-01
Chr09	irgsp1_rep	mRNA	4535277	4543613	.	-	.	ID=Os09t0261300-01;Name=Os09t0261300-01;Locus_id=Os09g0261300;Note=Similar to 4-nitrophenylphosphatase-like protein.;Transcript_evidence=AK059648 (DDBJ%2C Best hit);ORF_evidence=B6TQ54 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: phosphatase activity (GO:0016791);InterPro=2-phosphoglycolate phosphatase%2C eukaryotic (IPR006349),HAD-superfamily hydrolase%2C subfamily IIA (IPR006357),HAD-like domain (IPR023214),Nitrophenylphosphatase-like  domain (IPR023215);NIAS_FLcDNA=001-031-C04;Expression=AK059648;TENOR=Os09t0261300-01;KEGG=Os09t0261300-01 (EC:3.1.3.41)
Chr09	irgsp1_rep	five_prime_UTR	4543547	4543613	.	-	.	Parent=Os09t0261300-01
Chr09	irgsp1_rep	CDS	4543456	4543546	.	-	0	Parent=Os09t0261300-01
Chr09	irgsp1_rep	CDS	4543228	4543295	.	-	2	Parent=Os09t0261300-01
Chr09	irgsp1_rep	CDS	4542083	4542175	.	-	0	Parent=Os09t0261300-01
Chr09	irgsp1_rep	CDS	4541918	4541989	.	-	0	Parent=Os09t0261300-01
Chr09	irgsp1_rep	CDS	4540766	4540837	.	-	0	Parent=Os09t0261300-01
Chr09	irgsp1_rep	CDS	4540071	4540130	.	-	0	Parent=Os09t0261300-01
Chr09	irgsp1_rep	CDS	4539924	4539976	.	-	0	Parent=Os09t0261300-01
Chr09	irgsp1_rep	CDS	4537495	4537592	.	-	1	Parent=Os09t0261300-01
Chr09	irgsp1_rep	CDS	4537320	4537419	.	-	2	Parent=Os09t0261300-01
Chr09	irgsp1_rep	CDS	4535803	4535906	.	-	1	Parent=Os09t0261300-01
Chr09	irgsp1_rep	CDS	4535603	4535703	.	-	2	Parent=Os09t0261300-01
Chr09	irgsp1_rep	three_prime_UTR	4535277	4535602	.	-	.	Parent=Os09t0261300-01
Chr09	irgsp1_rep	mRNA	4535287	4543613	.	-	.	ID=Os09t0261300-02;Name=Os09t0261300-02;Locus_id=Os09g0261300;Note=Similar to 4-nitrophenylphosphatase.;Transcript_evidence=AK121797 (DDBJ%2C Best hit);ORF_evidence=B6TQ54 (UniProt);InterPro=HAD-like domain (IPR023214),Nitrophenylphosphatase-like  domain (IPR023215);NIAS_FLcDNA=J033095P18;Expression=AK121797;TENOR=Os09t0261300-02;KEGG=Os09t0261300-02 (EC:3.1.3.41)
Chr09	irgsp1_rep	five_prime_UTR	4543547	4543613	.	-	.	Parent=Os09t0261300-02
Chr09	irgsp1_rep	CDS	4543456	4543546	.	-	0	Parent=Os09t0261300-02
Chr09	irgsp1_rep	CDS	4543228	4543295	.	-	2	Parent=Os09t0261300-02
Chr09	irgsp1_rep	CDS	4542083	4542175	.	-	0	Parent=Os09t0261300-02
Chr09	irgsp1_rep	CDS	4541918	4541989	.	-	0	Parent=Os09t0261300-02
Chr09	irgsp1_rep	CDS	4540757	4540837	.	-	0	Parent=Os09t0261300-02
Chr09	irgsp1_rep	three_prime_UTR	4540071	4540756	.	-	.	Parent=Os09t0261300-02
Chr09	irgsp1_rep	three_prime_UTR	4537495	4539976	.	-	.	Parent=Os09t0261300-02
Chr09	irgsp1_rep	three_prime_UTR	4537320	4537419	.	-	.	Parent=Os09t0261300-02
Chr09	irgsp1_rep	three_prime_UTR	4535803	4535906	.	-	.	Parent=Os09t0261300-02
Chr09	irgsp1_rep	three_prime_UTR	4535287	4535703	.	-	.	Parent=Os09t0261300-02
Chr09	irgsp1_rep	mRNA	4554669	4555863	.	+	.	ID=Os09t0261400-01;Name=Os09t0261400-01;Locus_id=Os09g0261400;Note=Protein of unknown function DUF1296 family protein.;Transcript_evidence=AK105353 (DDBJ%2C Best hit);ORF_evidence=Q8W0T8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=UBA-like (IPR009060),Protein of unknown function DUF1296 (IPR009719);NIAS_FLcDNA=001-119-B01;Expression=AK105353;TENOR=Os09t0261400-01;KEGG=Os09t0261400-01
Chr09	irgsp1_rep	five_prime_UTR	4554669	4554929	.	+	.	Parent=Os09t0261400-01
Chr09	irgsp1_rep	CDS	4554930	4555086	.	+	0	Parent=Os09t0261400-01
Chr09	irgsp1_rep	CDS	4555635	4555720	.	+	2	Parent=Os09t0261400-01
Chr09	irgsp1_rep	three_prime_UTR	4555721	4555863	.	+	.	Parent=Os09t0261400-01
Chr09	irgsp1_rep	mRNA	4577704	4580691	.	+	.	ID=Os09t0261900-01;Name=Os09t0261900-01;Locus_id=Os09g0261900;Note=Similar to cDNA clone:J023055B18%2C full insert sequence.;Transcript_evidence=AK119585 (DDBJ%2C Best hit);ORF_evidence=B7EI52 (UniProt);NIAS_FLcDNA=002-117-C07;Expression=AK119585;TENOR=Os09t0261900-01;KEGG=Os09t0261900-01
Chr09	irgsp1_rep	five_prime_UTR	4577704	4577969	.	+	.	Parent=Os09t0261900-01
Chr09	irgsp1_rep	CDS	4577970	4578218	.	+	0	Parent=Os09t0261900-01
Chr09	irgsp1_rep	three_prime_UTR	4578219	4578575	.	+	.	Parent=Os09t0261900-01
Chr09	irgsp1_rep	three_prime_UTR	4578669	4578813	.	+	.	Parent=Os09t0261900-01
Chr09	irgsp1_rep	three_prime_UTR	4579006	4580343	.	+	.	Parent=Os09t0261900-01
Chr09	irgsp1_rep	three_prime_UTR	4580431	4580691	.	+	.	Parent=Os09t0261900-01
Chr09	irgsp1_rep	mRNA	4577773	4580685	.	+	.	ID=Os09t0261900-02;Name=Os09t0261900-02;Locus_id=Os09g0261900;Note=Hypothetical conserved gene.;Transcript_evidence=AK070594 (DDBJ%2C Best hit);ORF_evidence=A3BWM5 (UniProt);NIAS_FLcDNA=J023055B18;Expression=AK070594;TENOR=Os09t0261900-02;KEGG=Os09t0261900-02
Chr09	irgsp1_rep	five_prime_UTR	4577773	4577969	.	+	.	Parent=Os09t0261900-02
Chr09	irgsp1_rep	CDS	4577970	4578123	.	+	0	Parent=Os09t0261900-02
Chr09	irgsp1_rep	CDS	4578279	4578319	.	+	2	Parent=Os09t0261900-02
Chr09	irgsp1_rep	three_prime_UTR	4578320	4578350	.	+	.	Parent=Os09t0261900-02
Chr09	irgsp1_rep	three_prime_UTR	4579089	4580685	.	+	.	Parent=Os09t0261900-02
Chr09	irgsp1_rep	mRNA	4592236	4595598	.	+	.	ID=Os09t0262000-00;Name=Os09t0262000-00;Locus_id=Os09g0262000;CGSNL Gene Symbol=CCR24;CGSNL Gene Name=CINNAMOYL-COA REDUCTASE 24;Oryzabase Gene Symbol Synonym(s)=OsCCR24;Oryzabase Gene Name Synonym(s)=Cinnamoyl-CoA reductase 24;Note=Similar to Cinnamoyl CoA reductase.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8VXA7 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);Oryzabase=22250;TENOR=Os09t0262000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	4592236	4592359	.	+	0	Parent=Os09t0262000-00
Chr09	irgsp1_rep	CDS	4592689	4592774	.	+	2	Parent=Os09t0262000-00
Chr09	irgsp1_rep	CDS	4593303	4593482	.	+	0	Parent=Os09t0262000-00
Chr09	irgsp1_rep	CDS	4594002	4594357	.	+	0	Parent=Os09t0262000-00
Chr09	irgsp1_rep	CDS	4594985	4595076	.	+	1	Parent=Os09t0262000-00
Chr09	irgsp1_rep	CDS	4595480	4595598	.	+	2	Parent=Os09t0262000-00
Chr09	irgsp1_rep	mRNA	4704888	4706346	.	-	.	ID=Os09t0263474-00;Name=Os09t0263474-00;Locus_id=Os09g0263474;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A5B534 (UniProt);TENOR=Os09t0263474-00
Chr09	irgsp1_rep	CDS	4706284	4706346	.	-	0	Parent=Os09t0263474-00
Chr09	irgsp1_rep	CDS	4704888	4705085	.	-	0	Parent=Os09t0263474-00
Chr09	irgsp1_rep	mRNA	4737258	4737839	.	-	.	ID=Os09t0263933-00;Name=Os09t0263933-00;Locus_id=Os09g0263933;Note=Similar to flavonoid 3-monooxygenase.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001147572.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os09t0263933-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	4737258	4737839	.	-	0	Parent=Os09t0263933-00
Chr09	irgsp1_rep	mRNA	4737285	4737898	.	+	.	ID=Os09t0263972-00;Name=Os09t0263972-00;Locus_id=Os09g0263972;Note=Hypothetical protein.;Transcript_evidence=EU942896 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0263972-00
Chr09	irgsp1_rep	CDS	4737285	4737788	.	+	0	Parent=Os09t0263972-00
Chr09	irgsp1_rep	three_prime_UTR	4737789	4737898	.	+	.	Parent=Os09t0263972-00
Chr09	irgsp1_rep	mRNA	4752315	4752830	.	-	.	ID=Os09t0264011-00;Name=Os09t0264011-00;Locus_id=Os09g0264011;Note=Conserved hypothetical protein.;Transcript_evidence=AK372466 (DDBJ);ORF_evidence=Q6K2H9 (UniProt);TENOR=Os09t0264011-00
Chr09	irgsp1_rep	CDS	4752315	4752830	.	-	0	Parent=Os09t0264011-00
Chr09	irgsp1_rep	mRNA	4762038	4762365	.	-	.	ID=Os09t0264051-00;Name=Os09t0264051-00;Locus_id=Os09g0264051;Note=Similar to flavonoid 3-monooxygenase.;Transcript_evidence=BT039604 (DDBJ);ORF_evidence=NP_001147572.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);TENOR=Os09t0264051-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	4762365	4762365	.	-	.	Parent=Os09t0264051-00
Chr09	irgsp1_rep	CDS	4762086	4762364	.	-	0	Parent=Os09t0264051-00
Chr09	irgsp1_rep	three_prime_UTR	4762038	4762085	.	-	.	Parent=Os09t0264051-00
Chr09	irgsp1_rep	mRNA	4775527	4778505	.	-	.	ID=Os09t0264400-01;Name=Os09t0264400-01;Locus_id=Os09g0264400;Note=CytoChrome P450 family protein.;Transcript_evidence=AK100987 (DDBJ%2C Best hit);ORF_evidence=NP_001147572.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J023145F09;Expression=AK100987;TENOR=Os09t0264400-01;KEGG=Os09t0264400-01
Chr09	irgsp1_rep	five_prime_UTR	4778476	4778505	.	-	.	Parent=Os09t0264400-01
Chr09	irgsp1_rep	CDS	4777549	4778475	.	-	0	Parent=Os09t0264400-01
Chr09	irgsp1_rep	CDS	4775833	4776465	.	-	0	Parent=Os09t0264400-01
Chr09	irgsp1_rep	three_prime_UTR	4775527	4775832	.	-	.	Parent=Os09t0264400-01
Chr09	irgsp1_rep	mRNA	4775860	4776473	.	+	.	ID=Os09t0264675-00;Name=Os09t0264675-00;Locus_id=Os09g0264675;Note=Hypothetical protein.;Transcript_evidence=EU942896 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0264675-00
Chr09	irgsp1_rep	five_prime_UTR	4775860	4775902	.	+	.	Parent=Os09t0264675-00
Chr09	irgsp1_rep	CDS	4775903	4776208	.	+	0	Parent=Os09t0264675-00
Chr09	irgsp1_rep	three_prime_UTR	4776209	4776473	.	+	.	Parent=Os09t0264675-00
Chr09	irgsp1_rep	mRNA	4933536	4942090	.	-	.	ID=Os09t0265225-00;Name=Os09t0265225-00;Locus_id=Os09g0265225;Note=Hypothetical protein.;Transcript_evidence=tplb0062a03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0265225-00
Chr09	irgsp1_rep	five_prime_UTR	4941783	4942090	.	-	.	Parent=Os09t0265225-00
Chr09	irgsp1_rep	five_prime_UTR	4941460	4941677	.	-	.	Parent=Os09t0265225-00
Chr09	irgsp1_rep	five_prime_UTR	4941286	4941369	.	-	.	Parent=Os09t0265225-00
Chr09	irgsp1_rep	five_prime_UTR	4941088	4941197	.	-	.	Parent=Os09t0265225-00
Chr09	irgsp1_rep	five_prime_UTR	4940495	4940718	.	-	.	Parent=Os09t0265225-00
Chr09	irgsp1_rep	five_prime_UTR	4940200	4940350	.	-	.	Parent=Os09t0265225-00
Chr09	irgsp1_rep	five_prime_UTR	4939954	4940094	.	-	.	Parent=Os09t0265225-00
Chr09	irgsp1_rep	five_prime_UTR	4939665	4939766	.	-	.	Parent=Os09t0265225-00
Chr09	irgsp1_rep	five_prime_UTR	4938407	4938537	.	-	.	Parent=Os09t0265225-00
Chr09	irgsp1_rep	five_prime_UTR	4935669	4936115	.	-	.	Parent=Os09t0265225-00
Chr09	irgsp1_rep	CDS	4935616	4935668	.	-	0	Parent=Os09t0265225-00
Chr09	irgsp1_rep	CDS	4933630	4934140	.	-	1	Parent=Os09t0265225-00
Chr09	irgsp1_rep	three_prime_UTR	4933536	4933629	.	-	.	Parent=Os09t0265225-00
Chr09	irgsp1_rep	mRNA	4972698	4979974	.	-	.	ID=Os09t0265800-01;Name=Os09t0265800-01;Locus_id=Os09g0265800;Note=HGWP repeat domain containing protein.;Transcript_evidence=AK120499 (DDBJ%2C Best hit);ORF_evidence=Q5JM94 (UniProt);InterPro=HGWP repeat (IPR005213);NIAS_FLcDNA=J013121P19;TENOR=Os09t0265800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	4973533	4979974	.	-	.	Parent=Os09t0265800-01
Chr09	irgsp1_rep	CDS	4973080	4973532	.	-	0	Parent=Os09t0265800-01
Chr09	irgsp1_rep	three_prime_UTR	4972698	4973079	.	-	.	Parent=Os09t0265800-01
Chr09	irgsp1_rep	mRNA	4988979	4990542	.	+	.	ID=Os09t0266000-01;Name=Os09t0266000-01;Locus_id=Os09g0266000;Note=Similar to predicted protein.;Transcript_evidence=AK120937 (DDBJ%2C Best hit);ORF_evidence=NP_177304.1 (RefSeq);NIAS_FLcDNA=J023037A13;Expression=AK120937;TENOR=Os09t0266000-01;KEGG=Os09t0266000-01
Chr09	irgsp1_rep	five_prime_UTR	4988979	4989049	.	+	.	Parent=Os09t0266000-01
Chr09	irgsp1_rep	CDS	4989050	4989494	.	+	0	Parent=Os09t0266000-01
Chr09	irgsp1_rep	CDS	4990240	4990442	.	+	2	Parent=Os09t0266000-01
Chr09	irgsp1_rep	three_prime_UTR	4990443	4990542	.	+	.	Parent=Os09t0266000-01
Chr09	irgsp1_rep	mRNA	4988981	4991687	.	+	.	ID=Os09t0266000-02;Name=Os09t0266000-02;Locus_id=Os09g0266000;Note=RNA-directed DNA polymerase (reverse transcriptase)%2C related domain containing protein.;Transcript_evidence=AK061549 (DDBJ%2C Best hit);ORF_evidence=NP_177304.1 (RefSeq);NIAS_FLcDNA=006-311-A10;Expression=AK061549;TENOR=Os09t0266000-02;KEGG=Os09t0266000-02
Chr09	irgsp1_rep	five_prime_UTR	4988981	4989049	.	+	.	Parent=Os09t0266000-02
Chr09	irgsp1_rep	CDS	4989050	4989494	.	+	0	Parent=Os09t0266000-02
Chr09	irgsp1_rep	CDS	4990240	4990438	.	+	2	Parent=Os09t0266000-02
Chr09	irgsp1_rep	CDS	4991005	4991356	.	+	1	Parent=Os09t0266000-02
Chr09	irgsp1_rep	three_prime_UTR	4991357	4991687	.	+	.	Parent=Os09t0266000-02
Chr09	irgsp1_rep	mRNA	4989033	4990542	.	+	.	ID=Os09t0266000-03;Name=Os09t0266000-03;Locus_id=Os09g0266000;Note=Similar to predicted protein.;Transcript_evidence=AK067747 (DDBJ%2C Best hit);ORF_evidence=NP_177304.1 (RefSeq);NIAS_FLcDNA=J013116L09;Expression=AK067747;TENOR=Os09t0266000-03;KEGG=Os09t0266000-03
Chr09	irgsp1_rep	five_prime_UTR	4989033	4989049	.	+	.	Parent=Os09t0266000-03
Chr09	irgsp1_rep	CDS	4989050	4989494	.	+	0	Parent=Os09t0266000-03
Chr09	irgsp1_rep	CDS	4990240	4990442	.	+	2	Parent=Os09t0266000-03
Chr09	irgsp1_rep	three_prime_UTR	4990443	4990542	.	+	.	Parent=Os09t0266000-03
Chr09	irgsp1_rep	mRNA	4992461	4997394	.	-	.	ID=Os09t0266100-01;Name=Os09t0266100-01;Locus_id=Os09g0266100;Note=Conserved hypothetical protein.;Transcript_evidence=AK102054 (DDBJ%2C Best hit);ORF_evidence=F2DUQ9 (UniProt);NIAS_FLcDNA=J033082C15;Expression=AK102054;TENOR=Os09t0266100-01;KEGG=Os09t0266100-01
Chr09	irgsp1_rep	five_prime_UTR	4997230	4997394	.	-	.	Parent=Os09t0266100-01
Chr09	irgsp1_rep	five_prime_UTR	4995988	4996049	.	-	.	Parent=Os09t0266100-01
Chr09	irgsp1_rep	five_prime_UTR	4995878	4995884	.	-	.	Parent=Os09t0266100-01
Chr09	irgsp1_rep	CDS	4995694	4995877	.	-	0	Parent=Os09t0266100-01
Chr09	irgsp1_rep	CDS	4995142	4995377	.	-	2	Parent=Os09t0266100-01
Chr09	irgsp1_rep	CDS	4993057	4993131	.	-	0	Parent=Os09t0266100-01
Chr09	irgsp1_rep	three_prime_UTR	4992461	4993056	.	-	.	Parent=Os09t0266100-01
Chr09	irgsp1_rep	mRNA	4992064	4997389	.	-	.	ID=Os09t0266100-02;Name=Os09t0266100-02;Locus_id=Os09g0266100;Note=Hypothetical conserved gene.;Transcript_evidence=AK099488 (DDBJ%2C Best hit);ORF_evidence=B9G2G2 (UniProt);NIAS_FLcDNA=J013026J10;Expression=AK099488;TENOR=Os09t0266100-02;KEGG=Os09t0266100-02
Chr09	irgsp1_rep	five_prime_UTR	4997268	4997389	.	-	.	Parent=Os09t0266100-02
Chr09	irgsp1_rep	CDS	4997230	4997267	.	-	0	Parent=Os09t0266100-02
Chr09	irgsp1_rep	CDS	4995988	4996049	.	-	1	Parent=Os09t0266100-02
Chr09	irgsp1_rep	CDS	4995638	4995894	.	-	2	Parent=Os09t0266100-02
Chr09	irgsp1_rep	three_prime_UTR	4992064	4995637	.	-	.	Parent=Os09t0266100-02
Chr09	irgsp1_rep	mRNA	4992719	4995429	.	+	.	ID=Os09t0266200-00;Name=Os09t0266200-00;Locus_id=Os09g0266200;Note=Non-protein coding transcript.;Transcript_evidence=tplb0058h13 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os09t0266200-00
Chr09	irgsp1_rep	exon	4992719	4993343	.	+	.	Parent=Os09t0266200-00
Chr09	irgsp1_rep	exon	4994412	4995429	.	+	.	Parent=Os09t0266200-00
Chr09	irgsp1_rep	mRNA	5005986	5006587	.	+	.	ID=Os09t0266300-01;Name=Os09t0266300-01;Locus_id=Os09g0266300;Note=Conserved hypothetical protein.;Transcript_evidence=AK121026 (DDBJ%2C Best hit);ORF_evidence=B8BDR8 (UniProt);NIAS_FLcDNA=J023050D12;Expression=AK121026;TENOR=Os09t0266300-01;KEGG=Os09t0266300-01
Chr09	irgsp1_rep	five_prime_UTR	5005986	5005987	.	+	.	Parent=Os09t0266300-01
Chr09	irgsp1_rep	CDS	5005988	5006287	.	+	0	Parent=Os09t0266300-01
Chr09	irgsp1_rep	three_prime_UTR	5006288	5006587	.	+	.	Parent=Os09t0266300-01
Chr09	irgsp1_rep	mRNA	5006931	5019946	.	+	.	ID=Os09t0266400-01;Name=Os09t0266400-01;Locus_id=Os09g0266400;Note=PGAP1-like family protein.;Transcript_evidence=AK065862 (DDBJ%2C Best hit);ORF_evidence=A2Q4M6 (UniProt);GO=Biological Process: GPI anchor metabolic process (GO:0006505),Biological Process: intracellular protein transport (GO:0006886),Cellular Component: intrinsic to endoplasmic reticulum membrane (GO:0031227),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=GPI inositol-deacylase PGAP1-like (IPR012908);NIAS_FLcDNA=J013044F03;Expression=AK065862;TENOR=Os09t0266400-01;KEGG=Os09t0266400-01
Chr09	irgsp1_rep	five_prime_UTR	5006931	5007194	.	+	.	Parent=Os09t0266400-01
Chr09	irgsp1_rep	CDS	5007195	5007485	.	+	0	Parent=Os09t0266400-01
Chr09	irgsp1_rep	CDS	5008293	5008529	.	+	0	Parent=Os09t0266400-01
Chr09	irgsp1_rep	CDS	5008780	5008970	.	+	0	Parent=Os09t0266400-01
Chr09	irgsp1_rep	CDS	5009196	5009355	.	+	1	Parent=Os09t0266400-01
Chr09	irgsp1_rep	CDS	5009950	5010087	.	+	0	Parent=Os09t0266400-01
Chr09	irgsp1_rep	CDS	5010176	5010362	.	+	0	Parent=Os09t0266400-01
Chr09	irgsp1_rep	CDS	5011098	5011243	.	+	2	Parent=Os09t0266400-01
Chr09	irgsp1_rep	CDS	5011401	5011583	.	+	0	Parent=Os09t0266400-01
Chr09	irgsp1_rep	CDS	5012048	5012158	.	+	0	Parent=Os09t0266400-01
Chr09	irgsp1_rep	CDS	5013574	5013693	.	+	0	Parent=Os09t0266400-01
Chr09	irgsp1_rep	CDS	5013784	5013928	.	+	0	Parent=Os09t0266400-01
Chr09	irgsp1_rep	CDS	5014189	5014352	.	+	2	Parent=Os09t0266400-01
Chr09	irgsp1_rep	CDS	5015004	5015090	.	+	0	Parent=Os09t0266400-01
Chr09	irgsp1_rep	CDS	5015250	5015578	.	+	0	Parent=Os09t0266400-01
Chr09	irgsp1_rep	CDS	5017614	5017695	.	+	1	Parent=Os09t0266400-01
Chr09	irgsp1_rep	CDS	5017795	5017934	.	+	0	Parent=Os09t0266400-01
Chr09	irgsp1_rep	CDS	5018164	5018413	.	+	1	Parent=Os09t0266400-01
Chr09	irgsp1_rep	CDS	5019300	5019626	.	+	0	Parent=Os09t0266400-01
Chr09	irgsp1_rep	three_prime_UTR	5019627	5019946	.	+	.	Parent=Os09t0266400-01
Chr09	irgsp1_rep	mRNA	5021749	5024218	.	-	.	ID=Os09t0266600-01;Name=Os09t0266600-01;Locus_id=Os09g0266600;Oryzabase Gene Symbol Synonym(s)=BTBN18;Oryzabase Gene Name Synonym(s)=Bric-a-Brac%2C Tramtrack%2C Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain 18%2C BTB domain with non-phototropic hypocotyl 3 domain 18;Note=NPH3 domain containing protein.;Transcript_evidence=AK110823 (DDBJ%2C Best hit);ORF_evidence=NP_001148012.1 (RefSeq);GO=Biological Process: response to light stimulus (GO:0009416),Molecular Function: signal transducer activity (GO:0004871);InterPro=NPH3 (IPR004249);NIAS_FLcDNA=002-171-H04;Oryzabase=12403;Expression=AK110823;TENOR=Os09t0266600-01;KEGG=Os09t0266600-01
Chr09	irgsp1_rep	CDS	5024147	5024218	.	-	0	Parent=Os09t0266600-01
Chr09	irgsp1_rep	CDS	5022590	5023339	.	-	0	Parent=Os09t0266600-01
Chr09	irgsp1_rep	CDS	5022078	5022506	.	-	0	Parent=Os09t0266600-01
Chr09	irgsp1_rep	three_prime_UTR	5021749	5022077	.	-	.	Parent=Os09t0266600-01
Chr09	irgsp1_rep	mRNA	5022743	5024613	.	+	.	ID=Os09t0266950-00;Name=Os09t0266950-00;Locus_id=Os09g0266950;Note=Hypothetical protein.;Transcript_evidence=BT060652 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0266950-00
Chr09	irgsp1_rep	CDS	5022743	5023285	.	+	0	Parent=Os09t0266950-00
Chr09	irgsp1_rep	three_prime_UTR	5023286	5023303	.	+	.	Parent=Os09t0266950-00
Chr09	irgsp1_rep	three_prime_UTR	5024154	5024613	.	+	.	Parent=Os09t0266950-00
Chr09	irgsp1_rep	mRNA	5079551	5088669	.	-	.	ID=Os09t0267300-01;Name=Os09t0267300-01;Locus_id=Os09g0267300;Note=Hypothetical conserved gene.;Transcript_evidence=AK287741 (DDBJ%2C Best hit);ORF_evidence=A3BWP1 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J065146J19;TENOR=Os09t0267300-01;KEGG=Os09t0267300-01
Chr09	irgsp1_rep	five_prime_UTR	5087995	5088669	.	-	.	Parent=Os09t0267300-01
Chr09	irgsp1_rep	CDS	5087530	5087994	.	-	0	Parent=Os09t0267300-01
Chr09	irgsp1_rep	three_prime_UTR	5086731	5087529	.	-	.	Parent=Os09t0267300-01
Chr09	irgsp1_rep	three_prime_UTR	5086460	5086605	.	-	.	Parent=Os09t0267300-01
Chr09	irgsp1_rep	three_prime_UTR	5085533	5085687	.	-	.	Parent=Os09t0267300-01
Chr09	irgsp1_rep	three_prime_UTR	5085331	5085372	.	-	.	Parent=Os09t0267300-01
Chr09	irgsp1_rep	three_prime_UTR	5084746	5084922	.	-	.	Parent=Os09t0267300-01
Chr09	irgsp1_rep	three_prime_UTR	5084488	5084654	.	-	.	Parent=Os09t0267300-01
Chr09	irgsp1_rep	three_prime_UTR	5083829	5083936	.	-	.	Parent=Os09t0267300-01
Chr09	irgsp1_rep	three_prime_UTR	5082591	5082926	.	-	.	Parent=Os09t0267300-01
Chr09	irgsp1_rep	three_prime_UTR	5080923	5081003	.	-	.	Parent=Os09t0267300-01
Chr09	irgsp1_rep	three_prime_UTR	5079551	5079773	.	-	.	Parent=Os09t0267300-01
Chr09	irgsp1_rep	mRNA	5090401	5091421	.	-	.	ID=Os09t0267400-01;Name=Os09t0267400-01;Locus_id=Os09g0267400;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK070630 (DDBJ%2C Best hit);ORF_evidence=A3BWP2 (UniProt);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=J023058P10;Expression=AK070630;TENOR=Os09t0267400-01;KEGG=Os09t0267400-01
Chr09	irgsp1_rep	five_prime_UTR	5091229	5091421	.	-	.	Parent=Os09t0267400-01
Chr09	irgsp1_rep	CDS	5090596	5091228	.	-	0	Parent=Os09t0267400-01
Chr09	irgsp1_rep	three_prime_UTR	5090401	5090595	.	-	.	Parent=Os09t0267400-01
Chr09	irgsp1_rep	mRNA	5094691	5102635	.	+	.	ID=Os09t0267500-01;Name=Os09t0267500-01;Locus_id=Os09g0267500;Oryzabase Gene Symbol Synonym(s)=OsWD40-168;Note=WD-40 repeat containing protein.;Transcript_evidence=AK121740 (DDBJ%2C Best hit);ORF_evidence=XP_002871192.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J033085H13;Oryzabase=10849;Expression=AK121740;TENOR=Os09t0267500-01;KEGG=Os09t0267500-01
Chr09	irgsp1_rep	five_prime_UTR	5094691	5095032	.	+	.	Parent=Os09t0267500-01
Chr09	irgsp1_rep	CDS	5095033	5095189	.	+	0	Parent=Os09t0267500-01
Chr09	irgsp1_rep	CDS	5096833	5096945	.	+	2	Parent=Os09t0267500-01
Chr09	irgsp1_rep	CDS	5097744	5098004	.	+	0	Parent=Os09t0267500-01
Chr09	irgsp1_rep	CDS	5098142	5098246	.	+	0	Parent=Os09t0267500-01
Chr09	irgsp1_rep	CDS	5098914	5098979	.	+	0	Parent=Os09t0267500-01
Chr09	irgsp1_rep	CDS	5099070	5099291	.	+	0	Parent=Os09t0267500-01
Chr09	irgsp1_rep	CDS	5100088	5100612	.	+	0	Parent=Os09t0267500-01
Chr09	irgsp1_rep	CDS	5100722	5101303	.	+	0	Parent=Os09t0267500-01
Chr09	irgsp1_rep	CDS	5101391	5101573	.	+	0	Parent=Os09t0267500-01
Chr09	irgsp1_rep	CDS	5102205	5102315	.	+	0	Parent=Os09t0267500-01
Chr09	irgsp1_rep	three_prime_UTR	5102316	5102635	.	+	.	Parent=Os09t0267500-01
Chr09	irgsp1_rep	mRNA	5094914	5095701	.	+	.	ID=Os09t0267500-02;Name=Os09t0267500-02;Locus_id=Os09g0267500;Oryzabase Gene Symbol Synonym(s)=OsWD40-168;Note=Similar to predicted protein.;Transcript_evidence=AK073706 (DDBJ%2C Best hit);ORF_evidence=NP_196216.2 (RefSeq);NIAS_FLcDNA=J033059G01;Oryzabase=10849;Expression=AK073706;TENOR=Os09t0267500-02;KEGG=Os09t0267500-02
Chr09	irgsp1_rep	five_prime_UTR	5094914	5095032	.	+	.	Parent=Os09t0267500-02
Chr09	irgsp1_rep	CDS	5095033	5095449	.	+	0	Parent=Os09t0267500-02
Chr09	irgsp1_rep	three_prime_UTR	5095450	5095701	.	+	.	Parent=Os09t0267500-02
Chr09	irgsp1_rep	mRNA	5103093	5106816	.	+	.	ID=Os09t0267600-01;Name=Os09t0267600-01;Locus_id=Os09g0267600;Oryzabase Gene Symbol Synonym(s)=NP39;Oryzabase Gene Name Synonym(s)=Copia-like retroelement pol polyprotein;Note=Similar to Charged multivesicular body protein 4b.;Transcript_evidence=AK065728 (DDBJ%2C Best hit);ORF_evidence=B6T0C3 (UniProt);GO=Biological Process: protein transport (GO:0015031);InterPro=Snf7 (IPR005024);NIAS_FLcDNA=J013036O11;Oryzabase=14979;TENOR=Os09t0267600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	5103093	5103093	.	+	.	Parent=Os09t0267600-01
Chr09	irgsp1_rep	CDS	5103094	5103301	.	+	0	Parent=Os09t0267600-01
Chr09	irgsp1_rep	CDS	5103873	5103979	.	+	2	Parent=Os09t0267600-01
Chr09	irgsp1_rep	CDS	5104165	5104264	.	+	0	Parent=Os09t0267600-01
Chr09	irgsp1_rep	CDS	5104416	5104501	.	+	2	Parent=Os09t0267600-01
Chr09	irgsp1_rep	CDS	5104582	5104673	.	+	0	Parent=Os09t0267600-01
Chr09	irgsp1_rep	CDS	5104779	5104893	.	+	1	Parent=Os09t0267600-01
Chr09	irgsp1_rep	CDS	5104980	5105171	.	+	0	Parent=Os09t0267600-01
Chr09	irgsp1_rep	three_prime_UTR	5105172	5105175	.	+	.	Parent=Os09t0267600-01
Chr09	irgsp1_rep	three_prime_UTR	5106500	5106816	.	+	.	Parent=Os09t0267600-01
Chr09	irgsp1_rep	mRNA	5104163	5106823	.	+	.	ID=Os09t0267600-02;Name=Os09t0267600-02;Locus_id=Os09g0267600;Oryzabase Gene Symbol Synonym(s)=NP39;Oryzabase Gene Name Synonym(s)=Copia-like retroelement pol polyprotein;Note=Similar to Charged multivesicular body protein 4b.;Transcript_evidence=AK061983 (DDBJ%2C Best hit);ORF_evidence=B6T0C3 (UniProt);GO=Biological Process: protein transport (GO:0015031);InterPro=Snf7 (IPR005024);NIAS_FLcDNA=001-043-A12;Oryzabase=14979;TENOR=Os09t0267600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	5104163	5104173	.	+	.	Parent=Os09t0267600-02
Chr09	irgsp1_rep	CDS	5104174	5104264	.	+	0	Parent=Os09t0267600-02
Chr09	irgsp1_rep	CDS	5104416	5104501	.	+	2	Parent=Os09t0267600-02
Chr09	irgsp1_rep	CDS	5104582	5104673	.	+	0	Parent=Os09t0267600-02
Chr09	irgsp1_rep	CDS	5104779	5104893	.	+	1	Parent=Os09t0267600-02
Chr09	irgsp1_rep	CDS	5104980	5105171	.	+	0	Parent=Os09t0267600-02
Chr09	irgsp1_rep	three_prime_UTR	5105172	5105175	.	+	.	Parent=Os09t0267600-02
Chr09	irgsp1_rep	three_prime_UTR	5106500	5106823	.	+	.	Parent=Os09t0267600-02
Chr09	irgsp1_rep	mRNA	5104804	5106784	.	-	.	ID=Os09t0267701-00;Name=Os09t0267701-00;Locus_id=Os09g0267701;Note=Hypothetical protein.;Transcript_evidence=BT016875 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0267701-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	5106517	5106784	.	-	.	Parent=Os09t0267701-00
Chr09	irgsp1_rep	five_prime_UTR	5105167	5105188	.	-	.	Parent=Os09t0267701-00
Chr09	irgsp1_rep	CDS	5104983	5105166	.	-	0	Parent=Os09t0267701-00
Chr09	irgsp1_rep	CDS	5104804	5104897	.	-	2	Parent=Os09t0267701-00
Chr09	irgsp1_rep	mRNA	5111734	5115895	.	+	.	ID=Os09t0267800-01;Name=Os09t0267800-01;Locus_id=Os09g0267800;CGSNL Gene Symbol=RPM1;Oryzabase Gene Symbol Synonym(s)=OsRPM1;Oryzabase Gene Name Synonym(s)=disease resistance protein RPM1 homolog;Note=Hypothetical conserved gene.;Transcript_evidence=AK318518 (DDBJ%2C Best hit);ORF_evidence=Q6H4T9 (UniProt);NIAS_FLcDNA=J043031L23;Oryzabase=22662;TENOR=Os09t0267800-01;KEGG=Os09t0267800-01
Chr09	irgsp1_rep	five_prime_UTR	5111734	5111735	.	+	.	Parent=Os09t0267800-01
Chr09	irgsp1_rep	CDS	5111736	5112909	.	+	0	Parent=Os09t0267800-01
Chr09	irgsp1_rep	CDS	5115362	5115429	.	+	2	Parent=Os09t0267800-01
Chr09	irgsp1_rep	three_prime_UTR	5115430	5115451	.	+	.	Parent=Os09t0267800-01
Chr09	irgsp1_rep	three_prime_UTR	5115552	5115895	.	+	.	Parent=Os09t0267800-01
Chr09	irgsp1_rep	mRNA	5120497	5122573	.	-	.	ID=Os09t0268000-00;Name=Os09t0268000-00;Locus_id=Os09g0268000;Note=Similar to lectin-like receptor kinase 7.;Transcript_evidence=AK358060 (DDBJ);ORF_evidence=NP_001147473.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Legume lectin%2C beta chain%2C Mn/Ca-binding site (IPR019825);TENOR=Os09t0268000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	5120567	5122573	.	-	0	Parent=Os09t0268000-00
Chr09	irgsp1_rep	three_prime_UTR	5120497	5120566	.	-	.	Parent=Os09t0268000-00
Chr09	irgsp1_rep	mRNA	5125150	5127339	.	+	.	ID=Os09t0268100-00;Name=Os09t0268100-00;Locus_id=Os09g0268100;Note=Similar to lectin-like receptor kinase 7.;Transcript_evidence=AK361888 (DDBJ);ORF_evidence=B9G2H0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine-threonine/tyrosine-protein kinase (IPR001245),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441);TENOR=Os09t0268100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	5125150	5126604	.	+	0	Parent=Os09t0268100-00
Chr09	irgsp1_rep	three_prime_UTR	5126605	5127339	.	+	.	Parent=Os09t0268100-00
Chr09	irgsp1_rep	mRNA	5137891	5141057	.	+	.	ID=Os09t0268300-01;Name=Os09t0268300-01;Locus_id=Os09g0268300;Note=Similar to Hexose carrier.;Transcript_evidence=AK107400 (DDBJ%2C Best hit);ORF_evidence=E7CWB2 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=002-127-D09;Expression=AK107400;TENOR=Os09t0268300-01;KEGG=Os09t0268300-01
Chr09	irgsp1_rep	five_prime_UTR	5137891	5137958	.	+	.	Parent=Os09t0268300-01
Chr09	irgsp1_rep	CDS	5137959	5138094	.	+	0	Parent=Os09t0268300-01
Chr09	irgsp1_rep	CDS	5138195	5138514	.	+	2	Parent=Os09t0268300-01
Chr09	irgsp1_rep	CDS	5140146	5140616	.	+	0	Parent=Os09t0268300-01
Chr09	irgsp1_rep	three_prime_UTR	5140617	5141057	.	+	.	Parent=Os09t0268300-01
Chr09	irgsp1_rep	mRNA	5137902	5142308	.	+	.	ID=Os09t0268300-02;Name=Os09t0268300-02;Locus_id=Os09g0268300;Note=Similar to Monosaccharide transporter.;Transcript_evidence=AK067908 (DDBJ%2C Best hit);ORF_evidence=E7CWB2 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J013126N07;Expression=AK067908;TENOR=Os09t0268300-02;KEGG=Os09t0268300-02
Chr09	irgsp1_rep	five_prime_UTR	5137902	5137958	.	+	.	Parent=Os09t0268300-02
Chr09	irgsp1_rep	CDS	5137959	5138094	.	+	0	Parent=Os09t0268300-02
Chr09	irgsp1_rep	CDS	5138195	5138514	.	+	2	Parent=Os09t0268300-02
Chr09	irgsp1_rep	CDS	5140146	5140580	.	+	0	Parent=Os09t0268300-02
Chr09	irgsp1_rep	CDS	5141465	5142109	.	+	0	Parent=Os09t0268300-02
Chr09	irgsp1_rep	three_prime_UTR	5142110	5142308	.	+	.	Parent=Os09t0268300-02
Chr09	irgsp1_rep	mRNA	5138017	5142070	.	-	.	ID=Os09t0268401-00;Name=Os09t0268401-00;Locus_id=Os09g0268401;Note=Hypothetical protein.;Transcript_evidence=tplb0053a05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0268401-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	5141470	5142070	.	-	.	Parent=Os09t0268401-00
Chr09	irgsp1_rep	five_prime_UTR	5140562	5140584	.	-	.	Parent=Os09t0268401-00
Chr09	irgsp1_rep	CDS	5140136	5140561	.	-	0	Parent=Os09t0268401-00
Chr09	irgsp1_rep	CDS	5138325	5138501	.	-	0	Parent=Os09t0268401-00
Chr09	irgsp1_rep	three_prime_UTR	5138205	5138324	.	-	.	Parent=Os09t0268401-00
Chr09	irgsp1_rep	three_prime_UTR	5138017	5138101	.	-	.	Parent=Os09t0268401-00
Chr09	irgsp1_rep	mRNA	5146796	5149061	.	+	.	ID=Os09t0268500-01;Name=Os09t0268500-01;Locus_id=Os09g0268500;Note=Non-protein coding transcript.;Transcript_evidence=AK099706 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013075K04;TENOR=Os09t0268500-01
Chr09	irgsp1_rep	exon	5146796	5149061	.	+	.	Parent=Os09t0268500-01
Chr09	irgsp1_rep	mRNA	5150258	5154230	.	-	.	ID=Os09t0268600-01;Name=Os09t0268600-01;Locus_id=Os09g0268600;Note=Zinc finger%2C SWIM-type domain containing protein.;Transcript_evidence=AK100020 (DDBJ%2C Best hit);ORF_evidence=A2YZ62 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);NIAS_FLcDNA=J013145D03;Expression=AK100020;TENOR=Os09t0268600-01;KEGG=Os09t0268600-01
Chr09	irgsp1_rep	five_prime_UTR	5154133	5154230	.	-	.	Parent=Os09t0268600-01
Chr09	irgsp1_rep	five_prime_UTR	5152087	5153672	.	-	.	Parent=Os09t0268600-01
Chr09	irgsp1_rep	five_prime_UTR	5151839	5152015	.	-	.	Parent=Os09t0268600-01
Chr09	irgsp1_rep	CDS	5151812	5151838	.	-	0	Parent=Os09t0268600-01
Chr09	irgsp1_rep	CDS	5150781	5151733	.	-	0	Parent=Os09t0268600-01
Chr09	irgsp1_rep	CDS	5150357	5150699	.	-	1	Parent=Os09t0268600-01
Chr09	irgsp1_rep	three_prime_UTR	5150258	5150356	.	-	.	Parent=Os09t0268600-01
Chr09	irgsp1_rep	mRNA	5156336	5158006	.	-	.	ID=Os09t0268700-00;Name=Os09t0268700-00;Locus_id=Os09g0268700;Note=Protein of unknown function DUF247%2C plant domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6H4T3 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);TENOR=Os09t0268700-00
Chr09	irgsp1_rep	CDS	5156336	5158006	.	-	0	Parent=Os09t0268700-00
Chr09	irgsp1_rep	mRNA	5159460	5160554	.	+	.	ID=Os09t0268800-00;Name=Os09t0268800-00;Locus_id=Os09g0268800;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6H4T2 (UniProt);TENOR=Os09t0268800-00
Chr09	irgsp1_rep	CDS	5159460	5160554	.	+	0	Parent=Os09t0268800-00
Chr09	irgsp1_rep	mRNA	5171939	5176333	.	+	.	ID=Os09t0269000-00;Name=Os09t0269000-00;Locus_id=Os09g0269000;Note=Zinc finger%2C CCHC-type domain containing protein.;Transcript_evidence=EU954471 (DDBJ);ORF_evidence=GeneMark;GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Zinc finger%2C CCHC retroviral-type (IPR013084);TENOR=Os09t0269000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	5171939	5172028	.	+	.	Parent=Os09t0269000-00
Chr09	irgsp1_rep	CDS	5172029	5172260	.	+	0	Parent=Os09t0269000-00
Chr09	irgsp1_rep	CDS	5176249	5176310	.	+	2	Parent=Os09t0269000-00
Chr09	irgsp1_rep	three_prime_UTR	5176311	5176333	.	+	.	Parent=Os09t0269000-00
Chr09	irgsp1_rep	mRNA	5192879	5193614	.	-	.	ID=Os09t0269400-01;Name=Os09t0269400-01;Locus_id=Os09g0269400;Note=Conserved hypothetical protein.;Transcript_evidence=AK064746 (DDBJ%2C Best hit);ORF_evidence=NP_001174656.1 (RefSeq);NIAS_FLcDNA=002-120-E06;TENOR=Os09t0269400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	5193191	5193614	.	-	.	Parent=Os09t0269400-01
Chr09	irgsp1_rep	CDS	5193035	5193190	.	-	0	Parent=Os09t0269400-01
Chr09	irgsp1_rep	three_prime_UTR	5192879	5193034	.	-	.	Parent=Os09t0269400-01
Chr09	irgsp1_rep	mRNA	5276848	5278831	.	+	.	ID=Os09t0270700-00;Name=Os09t0270700-00;Locus_id=Os09g0270700;Note=Disease resistance protein domain containing protein.;Transcript_evidence=BT037966 (DDBJ);ORF_evidence=NP_001062732.1 (RefSeq);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os09t0270700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	5276848	5278830	.	+	0	Parent=Os09t0270700-00
Chr09	irgsp1_rep	three_prime_UTR	5278831	5278831	.	+	.	Parent=Os09t0270700-00
Chr09	irgsp1_rep	mRNA	5307474	5309044	.	-	.	ID=Os09t0270900-01;Name=Os09t0270900-01;Locus_id=Os09g0270900;CGSNL Gene Symbol=ISC3;CGSNL Gene Name=IRON-SULFUR CLUSTER PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsISC3;Oryzabase Gene Name Synonym(s)=Iron-sulfur cluster protein 3;Note=BolA-like protein domain containing protein.;Transcript_evidence=AK106363 (DDBJ%2C Best hit);ORF_evidence=B6UE68 (UniProt);InterPro=BolA protein (IPR002634),Fe-S metabolism associated domain%2C SufE-like (IPR003808);NIAS_FLcDNA=002-102-B03;Oryzabase=13418;Expression=AK106363;TENOR=Os09t0270900-01;KEGG=Os09t0270900-01
Chr09	irgsp1_rep	five_prime_UTR	5308877	5309044	.	-	.	Parent=Os09t0270900-01
Chr09	irgsp1_rep	CDS	5307776	5308876	.	-	0	Parent=Os09t0270900-01
Chr09	irgsp1_rep	three_prime_UTR	5307474	5307775	.	-	.	Parent=Os09t0270900-01
Chr09	irgsp1_rep	mRNA	5306896	5308875	.	-	.	ID=Os09t0270900-02;Name=Os09t0270900-02;Locus_id=Os09g0270900;CGSNL Gene Symbol=ISC3;CGSNL Gene Name=IRON-SULFUR CLUSTER PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsISC3;Oryzabase Gene Name Synonym(s)=Iron-sulfur cluster protein 3;Note=Similar to EMB1374.;Transcript_evidence=AK287486 (DDBJ%2C Best hit);ORF_evidence=B6UE68 (UniProt);InterPro=BolA protein (IPR002634),Fe-S metabolism associated domain%2C SufE-like (IPR003808);NIAS_FLcDNA=J043028C23;Oryzabase=13418;TENOR=Os09t0270900-02;KEGG=Os09t0270900-02
Chr09	irgsp1_rep	five_prime_UTR	5308874	5308875	.	-	.	Parent=Os09t0270900-02
Chr09	irgsp1_rep	CDS	5307776	5308873	.	-	0	Parent=Os09t0270900-02
Chr09	irgsp1_rep	three_prime_UTR	5306896	5307775	.	-	.	Parent=Os09t0270900-02
Chr09	irgsp1_rep	mRNA	5320875	5323838	.	+	.	ID=Os09t0271000-01;Name=Os09t0271000-01;Locus_id=Os09g0271000;Note=Hypothetical protein.;Transcript_evidence=AK102955 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033115G04;Expression=AK102955;TENOR=Os09t0271000-01;KEGG=Os09t0271000-01
Chr09	irgsp1_rep	five_prime_UTR	5320875	5322542	.	+	.	Parent=Os09t0271000-01
Chr09	irgsp1_rep	CDS	5322543	5322902	.	+	0	Parent=Os09t0271000-01
Chr09	irgsp1_rep	three_prime_UTR	5322903	5323838	.	+	.	Parent=Os09t0271000-01
Chr09	irgsp1_rep	mRNA	5327518	5330180	.	-	.	ID=Os09t0271100-01;Name=Os09t0271100-01;Locus_id=Os09g0271100;Note=Conserved hypothetical protein.;Transcript_evidence=AK100058 (DDBJ%2C Best hit);ORF_evidence=B9G2H5 (UniProt);NIAS_FLcDNA=J013158E12;Expression=AK100058;TENOR=Os09t0271100-01;KEGG=Os09t0271100-01
Chr09	irgsp1_rep	five_prime_UTR	5330104	5330180	.	-	.	Parent=Os09t0271100-01
Chr09	irgsp1_rep	five_prime_UTR	5328149	5328538	.	-	.	Parent=Os09t0271100-01
Chr09	irgsp1_rep	CDS	5327795	5328148	.	-	0	Parent=Os09t0271100-01
Chr09	irgsp1_rep	three_prime_UTR	5327518	5327794	.	-	.	Parent=Os09t0271100-01
Chr09	irgsp1_rep	mRNA	5370119	5372230	.	-	.	ID=Os09t0271550-01;Name=Os09t0271550-01;Locus_id=Os09g0271550;Note=Conserved hypothetical protein.;Transcript_evidence=AK288484 (DDBJ%2C Best hit);ORF_evidence=Q6ETB5 (UniProt);NIAS_FLcDNA=J090040D01;TENOR=Os09t0271550-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	5371179	5372230	.	-	.	Parent=Os09t0271550-01
Chr09	irgsp1_rep	CDS	5370951	5371178	.	-	0	Parent=Os09t0271550-01
Chr09	irgsp1_rep	three_prime_UTR	5370119	5370950	.	-	.	Parent=Os09t0271550-01
Chr09	irgsp1_rep	mRNA	5395272	5396709	.	-	.	ID=Os09t0272000-01;Name=Os09t0272000-01;Locus_id=Os09g0272000;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK068208 (DDBJ%2C Best hit);ORF_evidence=NP_001150530.1 (RefSeq);NIAS_FLcDNA=J013149O20;Expression=AK068208;TENOR=Os09t0272000-01;KEGG=Os09t0272000-01
Chr09	irgsp1_rep	five_prime_UTR	5396562	5396709	.	-	.	Parent=Os09t0272000-01
Chr09	irgsp1_rep	CDS	5396560	5396561	.	-	0	Parent=Os09t0272000-01
Chr09	irgsp1_rep	CDS	5396381	5396457	.	-	1	Parent=Os09t0272000-01
Chr09	irgsp1_rep	CDS	5395782	5396224	.	-	2	Parent=Os09t0272000-01
Chr09	irgsp1_rep	three_prime_UTR	5395272	5395781	.	-	.	Parent=Os09t0272000-01
Chr09	irgsp1_rep	mRNA	5403292	5404107	.	-	.	ID=Os09t0272200-01;Name=Os09t0272200-01;Locus_id=Os09g0272200;Note=Hypothetical protein.;Transcript_evidence=AK110674 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-169-G07;Expression=AK110674;TENOR=Os09t0272200-01;KEGG=Os09t0272200-01
Chr09	irgsp1_rep	five_prime_UTR	5404082	5404107	.	-	.	Parent=Os09t0272200-01
Chr09	irgsp1_rep	CDS	5403701	5404081	.	-	0	Parent=Os09t0272200-01
Chr09	irgsp1_rep	three_prime_UTR	5403292	5403700	.	-	.	Parent=Os09t0272200-01
Chr09	irgsp1_rep	mRNA	5402523	5404039	.	-	.	ID=Os09t0272200-02;Name=Os09t0272200-02;Locus_id=Os09g0272200;Note=Hypothetical conserved gene.;Transcript_evidence=AK241062 (DDBJ%2C Best hit);ORF_evidence=B9G2H8 (UniProt);NIAS_FLcDNA=J065065C24;TENOR=Os09t0272200-02;KEGG=Os09t0272200-02
Chr09	irgsp1_rep	five_prime_UTR	5403937	5404039	.	-	.	Parent=Os09t0272200-02
Chr09	irgsp1_rep	CDS	5403691	5403936	.	-	0	Parent=Os09t0272200-02
Chr09	irgsp1_rep	CDS	5402690	5402833	.	-	0	Parent=Os09t0272200-02
Chr09	irgsp1_rep	three_prime_UTR	5402523	5402689	.	-	.	Parent=Os09t0272200-02
Chr09	irgsp1_rep	mRNA	5430895	5433234	.	+	.	ID=Os09t0272300-01;Name=Os09t0272300-01;Locus_id=Os09g0272300;Note=Similar to 3-glucanase.;Transcript_evidence=AK102527 (DDBJ%2C Best hit);ORF_evidence=NP_193451.2 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J033096C05;Expression=AK102527;TENOR=Os09t0272300-01;KEGG=Os09t0272300-01
Chr09	irgsp1_rep	five_prime_UTR	5430895	5431055	.	+	.	Parent=Os09t0272300-01
Chr09	irgsp1_rep	CDS	5431056	5431393	.	+	0	Parent=Os09t0272300-01
Chr09	irgsp1_rep	CDS	5431891	5433019	.	+	1	Parent=Os09t0272300-01
Chr09	irgsp1_rep	three_prime_UTR	5433020	5433234	.	+	.	Parent=Os09t0272300-01
Chr09	irgsp1_rep	mRNA	5433560	5434099	.	-	.	ID=Os09t0272401-00;Name=Os09t0272401-00;Locus_id=Os09g0272401;Note=Hypothetical conserved gene.;Transcript_evidence=EU954514 (DDBJ);ORF_evidence=B6SP49 (UniProt);TENOR=Os09t0272401-00;KEGG=Os09t0272401-00
Chr09	irgsp1_rep	CDS	5434018	5434099	.	-	0	Parent=Os09t0272401-00
Chr09	irgsp1_rep	CDS	5433673	5433776	.	-	2	Parent=Os09t0272401-00
Chr09	irgsp1_rep	three_prime_UTR	5433560	5433672	.	-	.	Parent=Os09t0272401-00
Chr09	irgsp1_rep	mRNA	5445591	5450231	.	-	.	ID=Os09t0272500-01;Name=Os09t0272500-01;Locus_id=Os09g0272500;Note=Similar to cation cation antiporter.;Transcript_evidence=AK071858 (DDBJ%2C Best hit);ORF_evidence=NP_001148426.1 (RefSeq);InterPro=Vesicle transport protein%2C Use1 (IPR019150);NIAS_FLcDNA=J023117G02;Expression=AK071858;TENOR=Os09t0272500-01;KEGG=Os09t0272500-01
Chr09	irgsp1_rep	five_prime_UTR	5450008	5450231	.	-	.	Parent=Os09t0272500-01
Chr09	irgsp1_rep	five_prime_UTR	5449654	5449663	.	-	.	Parent=Os09t0272500-01
Chr09	irgsp1_rep	CDS	5449570	5449653	.	-	0	Parent=Os09t0272500-01
Chr09	irgsp1_rep	CDS	5449164	5449231	.	-	0	Parent=Os09t0272500-01
Chr09	irgsp1_rep	CDS	5448084	5448156	.	-	1	Parent=Os09t0272500-01
Chr09	irgsp1_rep	CDS	5447523	5447632	.	-	0	Parent=Os09t0272500-01
Chr09	irgsp1_rep	CDS	5447331	5447432	.	-	1	Parent=Os09t0272500-01
Chr09	irgsp1_rep	CDS	5447031	5447130	.	-	1	Parent=Os09t0272500-01
Chr09	irgsp1_rep	CDS	5446010	5446186	.	-	0	Parent=Os09t0272500-01
Chr09	irgsp1_rep	three_prime_UTR	5445591	5446009	.	-	.	Parent=Os09t0272500-01
Chr09	irgsp1_rep	mRNA	5454054	5454902	.	+	.	ID=Os09t0272600-01;Name=Os09t0272600-01;Locus_id=Os09g0272600;Note=Conserved hypothetical protein.;Transcript_evidence=AK063844 (DDBJ%2C Best hit);ORF_evidence=A2YZ74 (UniProt);NIAS_FLcDNA=001-122-C04;Expression=AK063844;TENOR=Os09t0272600-01;KEGG=Os09t0272600-01
Chr09	irgsp1_rep	five_prime_UTR	5454054	5454130	.	+	.	Parent=Os09t0272600-01
Chr09	irgsp1_rep	CDS	5454131	5454236	.	+	0	Parent=Os09t0272600-01
Chr09	irgsp1_rep	CDS	5454609	5454706	.	+	2	Parent=Os09t0272600-01
Chr09	irgsp1_rep	three_prime_UTR	5454707	5454902	.	+	.	Parent=Os09t0272600-01
Chr09	irgsp1_rep	mRNA	5471858	5491310	.	-	.	ID=Os09t0272900-01;Name=Os09t0272900-01;Locus_id=Os09g0272900;Note=Disease resistance protein domain containing protein.;Transcript_evidence=AK111610 (DDBJ%2C Best hit);ORF_evidence=B8BDP0 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: protein binding (GO:0005515),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),Leucine-rich repeat (IPR001611),NB-ARC (IPR002182);NIAS_FLcDNA=J013100B16;TENOR=Os09t0272900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	5490994	5491310	.	-	.	Parent=Os09t0272900-01
Chr09	irgsp1_rep	five_prime_UTR	5483586	5483601	.	-	.	Parent=Os09t0272900-01
Chr09	irgsp1_rep	CDS	5480811	5483585	.	-	0	Parent=Os09t0272900-01
Chr09	irgsp1_rep	three_prime_UTR	5480772	5480810	.	-	.	Parent=Os09t0272900-01
Chr09	irgsp1_rep	three_prime_UTR	5471858	5472608	.	-	.	Parent=Os09t0272900-01
Chr09	irgsp1_rep	mRNA	5471990	5482721	.	-	.	ID=Os09t0272900-02;Name=Os09t0272900-02;Locus_id=Os09g0272900;Note=Hypothetical conserved gene.;Transcript_evidence=AK111519 (DDBJ%2C Best hit);ORF_evidence=Q6H4Y5 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: ADP binding (GO:0043531);InterPro=Leucine-rich repeat (IPR001611),NB-ARC (IPR002182),Leucine-rich repeat%2C typical subtype (IPR003591);NIAS_FLcDNA=J013002H13;Expression=AK111519;TENOR=Os09t0272900-02;KEGG=Os09t0272900-02
Chr09	irgsp1_rep	CDS	5480811	5482721	.	-	0	Parent=Os09t0272900-02
Chr09	irgsp1_rep	three_prime_UTR	5480772	5480810	.	-	.	Parent=Os09t0272900-02
Chr09	irgsp1_rep	three_prime_UTR	5471990	5472654	.	-	.	Parent=Os09t0272900-02
Chr09	irgsp1_rep	mRNA	5538561	5539063	.	-	.	ID=Os09t0273600-00;Name=Os09t0273600-00;Locus_id=Os09g0273600;Note=Hypothetical gene.;Transcript_evidence=CT835836 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os09t0273600-00;KEGG=Os09t0273600-00
Chr09	irgsp1_rep	CDS	5538719	5539063	.	-	0	Parent=Os09t0273600-00
Chr09	irgsp1_rep	three_prime_UTR	5538561	5538718	.	-	.	Parent=Os09t0273600-00
Chr09	irgsp1_rep	mRNA	5539419	5541563	.	-	.	ID=Os09t0273701-00;Name=Os09t0273701-00;Locus_id=Os09g0273701;Note=Conserved hypothetical protein.;Transcript_evidence=AK365135 (DDBJ);ORF_evidence=Q6H5R1 (UniProt);TENOR=Os09t0273701-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	5541148	5541563	.	-	0	Parent=Os09t0273701-00
Chr09	irgsp1_rep	CDS	5539419	5539890	.	-	1	Parent=Os09t0273701-00
Chr09	irgsp1_rep	mRNA	5554226	5555029	.	-	.	ID=Os09t0273800-01;Name=Os09t0273800-01;Locus_id=Os09g0273800;Oryzabase Gene Symbol Synonym(s)=OSK4;Oryzabase Gene Name Synonym(s)=S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 4%2C Oryza sativa SKP1-like gene 4;Note=Similar to Fimbriata-associated protein (Fragment).;Transcript_evidence=AK107960 (DDBJ%2C Best hit);ORF_evidence=Q6J4U1 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);InterPro=SKP1 component (IPR001232),BTB/POZ fold (IPR011333),SKP1 component%2C dimerisation (IPR016072),SKP1 component%2C POZ (IPR016073),E3 ubiquitin ligase%2C SCF complex%2C Skp subunit (IPR016897);NIAS_FLcDNA=002-135-C08;Oryzabase=18439;Expression=AK107960;TENOR=Os09t0273800-01;KEGG=Os09t0273800-01
Chr09	irgsp1_rep	five_prime_UTR	5554900	5555029	.	-	.	Parent=Os09t0273800-01
Chr09	irgsp1_rep	CDS	5554396	5554899	.	-	0	Parent=Os09t0273800-01
Chr09	irgsp1_rep	three_prime_UTR	5554226	5554395	.	-	.	Parent=Os09t0273800-01
Chr09	irgsp1_rep	mRNA	5555452	5556325	.	-	.	ID=Os09t0273950-01;Name=Os09t0273950-01;Locus_id=Os09g0273950;Note=Conserved hypothetical protein.;Transcript_evidence=AK240903 (DDBJ%2C Best hit);ORF_evidence=NP_001175746.1 (RefSeq);NIAS_FLcDNA=J065034K09;TENOR=Os09t0273950-01;KEGG=Os09t0273950-01
Chr09	irgsp1_rep	five_prime_UTR	5556096	5556325	.	-	.	Parent=Os09t0273950-01
Chr09	irgsp1_rep	CDS	5555856	5556095	.	-	0	Parent=Os09t0273950-01
Chr09	irgsp1_rep	three_prime_UTR	5555452	5555855	.	-	.	Parent=Os09t0273950-01
Chr09	irgsp1_rep	mRNA	5556501	5557546	.	-	.	ID=Os09t0274025-00;Name=Os09t0274025-00;Locus_id=Os09g0274025;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os09t0274025-00
Chr09	irgsp1_rep	CDS	5557452	5557546	.	-	0	Parent=Os09t0274025-00
Chr09	irgsp1_rep	CDS	5556501	5557005	.	-	1	Parent=Os09t0274025-00
Chr09	irgsp1_rep	mRNA	5556531	5557221	.	+	.	ID=Os09t0274100-01;Name=Os09t0274100-01;Locus_id=Os09g0274100;Note=Similar to H0402C08.3 protein.;Transcript_evidence=AK062823 (DDBJ%2C Best hit);ORF_evidence=Q259J5 (UniProt);NIAS_FLcDNA=001-107-F05;TENOR=Os09t0274100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	5556531	5556531	.	+	.	Parent=Os09t0274100-01
Chr09	irgsp1_rep	CDS	5556532	5557074	.	+	0	Parent=Os09t0274100-01
Chr09	irgsp1_rep	three_prime_UTR	5557075	5557221	.	+	.	Parent=Os09t0274100-01
Chr09	irgsp1_rep	mRNA	5594786	5595349	.	-	.	ID=Os09t0274800-00;Name=Os09t0274800-00;Locus_id=Os09g0274800;Oryzabase Gene Symbol Synonym(s)=OSK12;Oryzabase Gene Name Synonym(s)=S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 12%2C Oryza sativa SKP1-like gene 12;Note=SKP1-like protein.;Transcript_evidence=AK253122 (DDBJ);ORF_evidence=Q6J4U1 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);InterPro=SKP1 component (IPR001232),BTB/POZ fold (IPR011333),SKP1 component%2C dimerisation (IPR016072),SKP1 component%2C POZ (IPR016073),E3 ubiquitin ligase%2C SCF complex%2C Skp subunit (IPR016897);Oryzabase=18444;TENOR=Os09t0274800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	5595305	5595349	.	-	.	Parent=Os09t0274800-00
Chr09	irgsp1_rep	CDS	5594786	5595304	.	-	0	Parent=Os09t0274800-00
Chr09	irgsp1_rep	mRNA	5598755	5599840	.	+	.	ID=Os09t0274900-01;Name=Os09t0274900-01;Locus_id=Os09g0274900;Note=Conserved hypothetical protein.;Transcript_evidence=AK062419 (DDBJ%2C Best hit);ORF_evidence=B8BDP2 (UniProt);NIAS_FLcDNA=001-102-G03;Expression=AK062419;TENOR=Os09t0274900-01;KEGG=Os09t0274900-01
Chr09	irgsp1_rep	five_prime_UTR	5598755	5598837	.	+	.	Parent=Os09t0274900-01
Chr09	irgsp1_rep	CDS	5598838	5598874	.	+	0	Parent=Os09t0274900-01
Chr09	irgsp1_rep	CDS	5599273	5599384	.	+	2	Parent=Os09t0274900-01
Chr09	irgsp1_rep	CDS	5599483	5599537	.	+	1	Parent=Os09t0274900-01
Chr09	irgsp1_rep	three_prime_UTR	5599538	5599840	.	+	.	Parent=Os09t0274900-01
Chr09	irgsp1_rep	mRNA	5610377	5611032	.	+	.	ID=Os09t0275200-01;Name=Os09t0275200-01;Locus_id=Os09g0275200;Oryzabase Gene Symbol Synonym(s)=OSK7;Oryzabase Gene Name Synonym(s)=S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 7%2C Oryza sativa SKP1-like gene 7;Note=Similar to Fimbriata-associated protein (Fragment).;Transcript_evidence=AK070953 (DDBJ%2C Best hit);ORF_evidence=B8BDP3 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);InterPro=SKP1 component (IPR001232),BTB/POZ fold (IPR011333),SKP1 component%2C dimerisation (IPR016072),SKP1 component%2C POZ (IPR016073),E3 ubiquitin ligase%2C SCF complex%2C Skp subunit (IPR016897);NIAS_FLcDNA=J023074H10;Oryzabase=18440;Expression=AK070953;TENOR=Os09t0275200-01;KEGG=Os09t0275200-01
Chr09	irgsp1_rep	five_prime_UTR	5610377	5610410	.	+	.	Parent=Os09t0275200-01
Chr09	irgsp1_rep	CDS	5610411	5610893	.	+	0	Parent=Os09t0275200-01
Chr09	irgsp1_rep	three_prime_UTR	5610894	5611032	.	+	.	Parent=Os09t0275200-01
Chr09	irgsp1_rep	mRNA	5625475	5628024	.	+	.	ID=Os09t0275300-00;Name=Os09t0275300-00;Locus_id=Os09g0275300;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001062750.2 (RefSeq);TENOR=Os09t0275300-00
Chr09	irgsp1_rep	CDS	5625475	5625543	.	+	0	Parent=Os09t0275300-00
Chr09	irgsp1_rep	CDS	5625669	5625887	.	+	0	Parent=Os09t0275300-00
Chr09	irgsp1_rep	CDS	5627908	5628024	.	+	0	Parent=Os09t0275300-00
Chr09	irgsp1_rep	mRNA	5643489	5645523	.	-	.	ID=Os09t0275400-01;Name=Os09t0275400-01;Locus_id=Os09g0275400;Oryzabase Gene Name Synonym(s)=premnaspirodiene oxygenase;Note=CytoChrome P450 family protein.;Transcript_evidence=AK064764 (DDBJ%2C Best hit);ORF_evidence=Q2QLJ2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=002-120-H08;Oryzabase=23280;Expression=AK064764;TENOR=Os09t0275400-01;KEGG=Os09t0275400-01
Chr09	irgsp1_rep	five_prime_UTR	5645431	5645523	.	-	.	Parent=Os09t0275400-01
Chr09	irgsp1_rep	CDS	5644969	5645430	.	-	0	Parent=Os09t0275400-01
Chr09	irgsp1_rep	CDS	5644308	5644748	.	-	0	Parent=Os09t0275400-01
Chr09	irgsp1_rep	CDS	5643583	5644209	.	-	0	Parent=Os09t0275400-01
Chr09	irgsp1_rep	three_prime_UTR	5643489	5643582	.	-	.	Parent=Os09t0275400-01
Chr09	irgsp1_rep	mRNA	5643652	5645443	.	+	.	ID=Os09t0276000-00;Name=Os09t0276000-00;Locus_id=Os09g0276000;Note=Hypothetical protein.;Transcript_evidence=tplb0041k22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0276000-00
Chr09	irgsp1_rep	five_prime_UTR	5643652	5644217	.	+	.	Parent=Os09t0276000-00
Chr09	irgsp1_rep	five_prime_UTR	5644319	5644491	.	+	.	Parent=Os09t0276000-00
Chr09	irgsp1_rep	CDS	5644492	5644743	.	+	0	Parent=Os09t0276000-00
Chr09	irgsp1_rep	CDS	5644966	5645443	.	+	0	Parent=Os09t0276000-00
Chr09	irgsp1_rep	mRNA	5700906	5702049	.	+	.	ID=Os09t0276600-01;Name=Os09t0276600-01;Locus_id=Os09g0276600;Note=Conserved hypothetical protein.;Transcript_evidence=AK068402 (DDBJ%2C Best hit);ORF_evidence=NP_001172902.1 (RefSeq);NIAS_FLcDNA=J013151G06;TENOR=Os09t0276600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	5700906	5701055	.	+	.	Parent=Os09t0276600-01
Chr09	irgsp1_rep	five_prime_UTR	5701171	5701254	.	+	.	Parent=Os09t0276600-01
Chr09	irgsp1_rep	CDS	5701255	5701542	.	+	0	Parent=Os09t0276600-01
Chr09	irgsp1_rep	three_prime_UTR	5701543	5702049	.	+	.	Parent=Os09t0276600-01
Chr09	irgsp1_rep	mRNA	5758768	5759132	.	-	.	ID=Os09t0277100-00;Name=Os09t0277100-00;Locus_id=Os09g0277100;Note=Hypothetical protein.;Transcript_evidence=FP097651 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0277100-00
Chr09	irgsp1_rep	CDS	5758768	5759132	.	-	0	Parent=Os09t0277100-00
Chr09	irgsp1_rep	mRNA	5781847	5785946	.	+	.	ID=Os09t0277800-01;Name=Os09t0277800-01;Locus_id=Os09g0277800;Note=Similar to Enoyl-[acyl-carrier-protein] reductase [NADH]%2C chloroplast precursor (EC 1.3.1.9) (NADH-dependent enoyl-ACP reductase).;Transcript_evidence=AK103141 (DDBJ%2C Best hit);ORF_evidence=B6TYG2 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033120G12;Expression=AK103141;TENOR=Os09t0277800-01;KEGG=Os09t0277800-01 (EC:1.3.1.9)
Chr09	irgsp1_rep	five_prime_UTR	5781847	5781955	.	+	.	Parent=Os09t0277800-01
Chr09	irgsp1_rep	five_prime_UTR	5782521	5782534	.	+	.	Parent=Os09t0277800-01
Chr09	irgsp1_rep	CDS	5782535	5782772	.	+	0	Parent=Os09t0277800-01
Chr09	irgsp1_rep	CDS	5783232	5783341	.	+	2	Parent=Os09t0277800-01
Chr09	irgsp1_rep	CDS	5783419	5783474	.	+	0	Parent=Os09t0277800-01
Chr09	irgsp1_rep	CDS	5783584	5783668	.	+	1	Parent=Os09t0277800-01
Chr09	irgsp1_rep	CDS	5783738	5783785	.	+	0	Parent=Os09t0277800-01
Chr09	irgsp1_rep	CDS	5783911	5783985	.	+	0	Parent=Os09t0277800-01
Chr09	irgsp1_rep	CDS	5784081	5784192	.	+	0	Parent=Os09t0277800-01
Chr09	irgsp1_rep	CDS	5784638	5784689	.	+	2	Parent=Os09t0277800-01
Chr09	irgsp1_rep	CDS	5784767	5784818	.	+	1	Parent=Os09t0277800-01
Chr09	irgsp1_rep	CDS	5784917	5784974	.	+	0	Parent=Os09t0277800-01
Chr09	irgsp1_rep	CDS	5785217	5785315	.	+	2	Parent=Os09t0277800-01
Chr09	irgsp1_rep	CDS	5785407	5785537	.	+	2	Parent=Os09t0277800-01
Chr09	irgsp1_rep	three_prime_UTR	5785538	5785946	.	+	.	Parent=Os09t0277800-01
Chr09	irgsp1_rep	mRNA	5789801	5790358	.	+	.	ID=Os09t0278000-00;Name=Os09t0278000-00;Locus_id=Os09g0278000;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001062753.2 (RefSeq);TENOR=Os09t0278000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	5789801	5790358	.	+	0	Parent=Os09t0278000-00
Chr09	irgsp1_rep	mRNA	5798818	5806544	.	-	.	ID=Os09t0278300-00;Name=Os09t0278300-00;Locus_id=Os09g0278300;Note=Serine hydroxymethyltransferase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6H5I5 (UniProt);GO=Biological Process: glycine metabolic process (GO:0006544),Biological Process: L-serine metabolic process (GO:0006563),Biological Process: cellular protein metabolic process (GO:0044267),Biological Process: phosphatidylinositol metabolic process (GO:0046488),Molecular Function: glycine hydroxymethyltransferase activity (GO:0004372),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphatidylinositol phosphate kinase activity (GO:0016307);InterPro=Serine hydroxymethyltransferase (IPR001085),Chaperonin Cpn60/TCP-1 (IPR002423),Phosphatidylinositol-4-phosphate 5-kinase%2C core (IPR002498),Phosphatidylinositol-4-phosphate 5-kinase%2C core%2C subgroup (IPR016034),Phosphatidylinositol-4-phosphate 5-kinase (IPR023610);TENOR=Os09t0278300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	5805941	5806544	.	-	0	Parent=Os09t0278300-00
Chr09	irgsp1_rep	CDS	5805628	5805805	.	-	2	Parent=Os09t0278300-00
Chr09	irgsp1_rep	CDS	5805384	5805528	.	-	1	Parent=Os09t0278300-00
Chr09	irgsp1_rep	CDS	5804937	5805284	.	-	0	Parent=Os09t0278300-00
Chr09	irgsp1_rep	CDS	5803390	5804151	.	-	0	Parent=Os09t0278300-00
Chr09	irgsp1_rep	CDS	5801531	5802427	.	-	0	Parent=Os09t0278300-00
Chr09	irgsp1_rep	CDS	5800657	5800917	.	-	0	Parent=Os09t0278300-00
Chr09	irgsp1_rep	CDS	5800334	5800495	.	-	0	Parent=Os09t0278300-00
Chr09	irgsp1_rep	CDS	5799169	5799549	.	-	0	Parent=Os09t0278300-00
Chr09	irgsp1_rep	CDS	5798818	5798892	.	-	0	Parent=Os09t0278300-00
Chr09	irgsp1_rep	mRNA	5801081	5801674	.	+	.	ID=Os09t0278401-00;Name=Os09t0278401-00;Locus_id=Os09g0278401;Note=Hypothetical protein.;Transcript_evidence=BT084808 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0278401-00
Chr09	irgsp1_rep	five_prime_UTR	5801081	5801232	.	+	.	Parent=Os09t0278401-00
Chr09	irgsp1_rep	CDS	5801233	5801520	.	+	0	Parent=Os09t0278401-00
Chr09	irgsp1_rep	three_prime_UTR	5801521	5801674	.	+	.	Parent=Os09t0278401-00
Chr09	irgsp1_rep	mRNA	5826160	5827036	.	+	.	ID=Os09t0278700-00;Name=Os09t0278700-00;Locus_id=Os09g0278700;Note=Hypothetical conserved gene.;Transcript_evidence=AK358077 (DDBJ);ORF_evidence=Q6H5H8 (UniProt);TENOR=Os09t0278700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	5826160	5826194	.	+	.	Parent=Os09t0278700-00
Chr09	irgsp1_rep	CDS	5826195	5827019	.	+	0	Parent=Os09t0278700-00
Chr09	irgsp1_rep	three_prime_UTR	5827020	5827036	.	+	.	Parent=Os09t0278700-00
Chr09	irgsp1_rep	mRNA	5835644	5838345	.	+	.	ID=Os09t0278900-01;Name=Os09t0278900-01;Locus_id=Os09g0278900;Note=Non-protein coding transcript.;Transcript_evidence=AK121436 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023140B18;TENOR=Os09t0278900-01
Chr09	irgsp1_rep	exon	5835644	5835713	.	+	.	Parent=Os09t0278900-01
Chr09	irgsp1_rep	exon	5837241	5837289	.	+	.	Parent=Os09t0278900-01
Chr09	irgsp1_rep	exon	5838048	5838345	.	+	.	Parent=Os09t0278900-01
Chr09	irgsp1_rep	mRNA	5837785	5843899	.	-	.	ID=Os09t0279000-01;Name=Os09t0279000-01;Locus_id=Os09g0279000;Note=Similar to r-interacting factor1.;Transcript_evidence=AK068285 (DDBJ%2C Best hit);ORF_evidence=NP_001106054.1 (RefSeq);InterPro=EMSY N-terminal (IPR005491);NIAS_FLcDNA=J013149N22;TENOR=Os09t0279000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	5843819	5843899	.	-	0	Parent=Os09t0279000-01
Chr09	irgsp1_rep	CDS	5843610	5843727	.	-	0	Parent=Os09t0279000-01
Chr09	irgsp1_rep	CDS	5841996	5842204	.	-	2	Parent=Os09t0279000-01
Chr09	irgsp1_rep	CDS	5841795	5841904	.	-	0	Parent=Os09t0279000-01
Chr09	irgsp1_rep	CDS	5841477	5841720	.	-	1	Parent=Os09t0279000-01
Chr09	irgsp1_rep	CDS	5841176	5841400	.	-	0	Parent=Os09t0279000-01
Chr09	irgsp1_rep	CDS	5841032	5841100	.	-	0	Parent=Os09t0279000-01
Chr09	irgsp1_rep	CDS	5838886	5839128	.	-	0	Parent=Os09t0279000-01
Chr09	irgsp1_rep	CDS	5838740	5838808	.	-	0	Parent=Os09t0279000-01
Chr09	irgsp1_rep	CDS	5838610	5838673	.	-	0	Parent=Os09t0279000-01
Chr09	irgsp1_rep	CDS	5838056	5838174	.	-	2	Parent=Os09t0279000-01
Chr09	irgsp1_rep	three_prime_UTR	5837785	5838055	.	-	.	Parent=Os09t0279000-01
Chr09	irgsp1_rep	mRNA	5838557	5839241	.	+	.	ID=Os09t0279050-00;Name=Os09t0279050-00;Locus_id=Os09g0279050;Note=Non-protein coding transcript.;Transcript_evidence=AK355936 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0279050-00
Chr09	irgsp1_rep	exon	5838557	5839241	.	+	.	Parent=Os09t0279050-00
Chr09	irgsp1_rep	mRNA	5847714	5851717	.	-	.	ID=Os09t0279100-01;Name=Os09t0279100-01;Locus_id=Os09g0279100;Note=Hypothetical conserved gene.;Transcript_evidence=AK241073 (DDBJ%2C Best hit);ORF_evidence=Q6H5H4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J065067D08;TENOR=Os09t0279100-01;KEGG=Os09t0279100-01 (EC:2.7.11.1)
Chr09	irgsp1_rep	five_prime_UTR	5851282	5851717	.	-	.	Parent=Os09t0279100-01
Chr09	irgsp1_rep	CDS	5850812	5851281	.	-	0	Parent=Os09t0279100-01
Chr09	irgsp1_rep	CDS	5850417	5850582	.	-	1	Parent=Os09t0279100-01
Chr09	irgsp1_rep	CDS	5850282	5850332	.	-	0	Parent=Os09t0279100-01
Chr09	irgsp1_rep	CDS	5849922	5850147	.	-	0	Parent=Os09t0279100-01
Chr09	irgsp1_rep	CDS	5849817	5849836	.	-	2	Parent=Os09t0279100-01
Chr09	irgsp1_rep	three_prime_UTR	5849731	5849816	.	-	.	Parent=Os09t0279100-01
Chr09	irgsp1_rep	three_prime_UTR	5848711	5849438	.	-	.	Parent=Os09t0279100-01
Chr09	irgsp1_rep	three_prime_UTR	5847714	5848464	.	-	.	Parent=Os09t0279100-01
Chr09	irgsp1_rep	mRNA	5856235	5857106	.	-	.	ID=Os09t0279200-01;Name=Os09t0279200-01;Locus_id=Os09g0279200;Note=Conserved hypothetical protein.;Transcript_evidence=AK062883 (DDBJ%2C Best hit);ORF_evidence=B8BDQ3 (UniProt);NIAS_FLcDNA=001-108-D07;Expression=AK062883;TENOR=Os09t0279200-01;KEGG=Os09t0279200-01
Chr09	irgsp1_rep	five_prime_UTR	5856912	5857106	.	-	.	Parent=Os09t0279200-01
Chr09	irgsp1_rep	CDS	5856558	5856911	.	-	0	Parent=Os09t0279200-01
Chr09	irgsp1_rep	three_prime_UTR	5856235	5856557	.	-	.	Parent=Os09t0279200-01
Chr09	irgsp1_rep	mRNA	5863922	5865225	.	+	.	ID=Os09t0279300-00;Name=Os09t0279300-00;Locus_id=Os09g0279300;Note=Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 domain containing protein.;Transcript_evidence=AK373149 (DDBJ);ORF_evidence=NP_001062758.1 (RefSeq);InterPro=Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 (IPR003397);TENOR=Os09t0279300-00
Chr09	irgsp1_rep	five_prime_UTR	5863922	5863940	.	+	.	Parent=Os09t0279300-00
Chr09	irgsp1_rep	CDS	5863941	5864265	.	+	0	Parent=Os09t0279300-00
Chr09	irgsp1_rep	CDS	5865054	5865175	.	+	2	Parent=Os09t0279300-00
Chr09	irgsp1_rep	three_prime_UTR	5865176	5865225	.	+	.	Parent=Os09t0279300-00
Chr09	irgsp1_rep	mRNA	5866495	5870513	.	+	.	ID=Os09t0279400-01;Name=Os09t0279400-01;Locus_id=Os09g0279400;CGSNL Gene Symbol=STR3;CGSNL Gene Name=SULFURTRANSFERASE 3;Oryzabase Gene Symbol Synonym(s)=OsStr3;Oryzabase Gene Name Synonym(s)=Sulfurtransferase 3;Note=Rhodanese-like domain containing protein.;Transcript_evidence=AK067071 (DDBJ%2C Best hit);ORF_evidence=NP_565969.1 (RefSeq);InterPro=Rhodanese-like (IPR001763);NIAS_FLcDNA=J013091I09;Oryzabase=12053;Expression=AK067071;TENOR=Os09t0279400-01;KEGG=Os09t0279400-01
Chr09	irgsp1_rep	five_prime_UTR	5866495	5866615	.	+	.	Parent=Os09t0279400-01
Chr09	irgsp1_rep	CDS	5866616	5866656	.	+	0	Parent=Os09t0279400-01
Chr09	irgsp1_rep	CDS	5866821	5867083	.	+	1	Parent=Os09t0279400-01
Chr09	irgsp1_rep	CDS	5868252	5868402	.	+	2	Parent=Os09t0279400-01
Chr09	irgsp1_rep	CDS	5868866	5868951	.	+	1	Parent=Os09t0279400-01
Chr09	irgsp1_rep	CDS	5869370	5869474	.	+	2	Parent=Os09t0279400-01
Chr09	irgsp1_rep	CDS	5869554	5869627	.	+	2	Parent=Os09t0279400-01
Chr09	irgsp1_rep	three_prime_UTR	5869628	5869692	.	+	.	Parent=Os09t0279400-01
Chr09	irgsp1_rep	three_prime_UTR	5870266	5870513	.	+	.	Parent=Os09t0279400-01
Chr09	irgsp1_rep	mRNA	5871093	5873188	.	-	.	ID=Os09t0279500-01;Name=Os09t0279500-01;Locus_id=Os09g0279500;Note=Similar to Plastid-specific 30S ribosomal protein 2%2C chloroplast precursor (PSRP- 2).;Transcript_evidence=AK067492 (DDBJ%2C Best hit);ORF_evidence=NP_001149356.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013110L09;TENOR=Os09t0279500-01
Chr09	irgsp1_rep	five_prime_UTR	5873104	5873188	.	-	.	Parent=Os09t0279500-01
Chr09	irgsp1_rep	CDS	5872804	5873103	.	-	0	Parent=Os09t0279500-01
Chr09	irgsp1_rep	CDS	5872283	5872384	.	-	0	Parent=Os09t0279500-01
Chr09	irgsp1_rep	CDS	5871899	5872195	.	-	0	Parent=Os09t0279500-01
Chr09	irgsp1_rep	CDS	5871298	5871336	.	-	0	Parent=Os09t0279500-01
Chr09	irgsp1_rep	three_prime_UTR	5871093	5871297	.	-	.	Parent=Os09t0279500-01
Chr09	irgsp1_rep	mRNA	5870982	5872337	.	-	.	ID=Os09t0279500-02;Name=Os09t0279500-02;Locus_id=Os09g0279500;Note=Similar to plastid-specific 30S ribosomal protein 2.;Transcript_evidence=AK062461 (DDBJ%2C Best hit);ORF_evidence=XP_002462099.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-103-D08;Expression=AK062461;TENOR=Os09t0279500-02;KEGG=Os09t0279500-02
Chr09	irgsp1_rep	five_prime_UTR	5872337	5872337	.	-	.	Parent=Os09t0279500-02
Chr09	irgsp1_rep	CDS	5872283	5872336	.	-	0	Parent=Os09t0279500-02
Chr09	irgsp1_rep	CDS	5871899	5872195	.	-	0	Parent=Os09t0279500-02
Chr09	irgsp1_rep	CDS	5871298	5871336	.	-	0	Parent=Os09t0279500-02
Chr09	irgsp1_rep	three_prime_UTR	5870982	5871297	.	-	.	Parent=Os09t0279500-02
Chr09	irgsp1_rep	mRNA	5871093	5873142	.	-	.	ID=Os09t0279500-03;Name=Os09t0279500-03;Locus_id=Os09g0279500;Note=Similar to Plastid-specific 30S ribosomal protein 2%2C chloroplast precursor (PSRP- 2).;Transcript_evidence=AK104715 (DDBJ%2C Best hit);ORF_evidence=NP_001149356.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-038-A04;TENOR=Os09t0279500-03
Chr09	irgsp1_rep	five_prime_UTR	5873104	5873142	.	-	.	Parent=Os09t0279500-03
Chr09	irgsp1_rep	CDS	5872804	5873103	.	-	0	Parent=Os09t0279500-03
Chr09	irgsp1_rep	CDS	5872283	5872384	.	-	0	Parent=Os09t0279500-03
Chr09	irgsp1_rep	CDS	5871899	5872195	.	-	0	Parent=Os09t0279500-03
Chr09	irgsp1_rep	CDS	5871298	5871336	.	-	0	Parent=Os09t0279500-03
Chr09	irgsp1_rep	three_prime_UTR	5871093	5871297	.	-	.	Parent=Os09t0279500-03
Chr09	irgsp1_rep	mRNA	5874972	5883020	.	+	.	ID=Os09t0279600-01;Name=Os09t0279600-01;Locus_id=Os09g0279600;CGSNL Gene Symbol=TOP6B;CGSNL Gene Name=TOPOISOMERASE 6 SUBUNIT B;Oryzabase Gene Symbol Synonym(s)=OsTOP6B%2C OsSPO11-6B;Oryzabase Gene Name Synonym(s)=topoisomerase 6 subunit B;Note=Similar to Topoisomerase 6 subunit B.;Transcript_evidence=AK101452 (DDBJ%2C Best hit);ORF_evidence=Q6UFU6 (UniProt);GO=Biological Process: DNA topological change (GO:0006265),Cellular Component: Chromosome (GO:0005694),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA topoisomerase (ATP-hydrolyzing) activity (GO:0003918),Molecular Function: ATP binding (GO:0005524);InterPro=ATPase-like%2C ATP-binding domain (IPR003594),Ribosomal protein S13-like%2C H2TH (IPR010979),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),DNA topoisomerase VI%2C subunit B%2C transducer (IPR015320),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=J033039N14;Oryzabase=8391;Expression=AK101452;TENOR=Os09t0279600-01;KEGG=Os09t0279600-01
Chr09	irgsp1_rep	five_prime_UTR	5874972	5875053	.	+	.	Parent=Os09t0279600-01
Chr09	irgsp1_rep	CDS	5875054	5875219	.	+	0	Parent=Os09t0279600-01
Chr09	irgsp1_rep	CDS	5875360	5875412	.	+	2	Parent=Os09t0279600-01
Chr09	irgsp1_rep	CDS	5875730	5875827	.	+	0	Parent=Os09t0279600-01
Chr09	irgsp1_rep	CDS	5875916	5876021	.	+	1	Parent=Os09t0279600-01
Chr09	irgsp1_rep	CDS	5876186	5876320	.	+	0	Parent=Os09t0279600-01
Chr09	irgsp1_rep	CDS	5876399	5876450	.	+	0	Parent=Os09t0279600-01
Chr09	irgsp1_rep	CDS	5876571	5876635	.	+	2	Parent=Os09t0279600-01
Chr09	irgsp1_rep	CDS	5878172	5878278	.	+	0	Parent=Os09t0279600-01
Chr09	irgsp1_rep	CDS	5878425	5878527	.	+	1	Parent=Os09t0279600-01
Chr09	irgsp1_rep	CDS	5878615	5878700	.	+	0	Parent=Os09t0279600-01
Chr09	irgsp1_rep	CDS	5878784	5878980	.	+	1	Parent=Os09t0279600-01
Chr09	irgsp1_rep	CDS	5879333	5879448	.	+	2	Parent=Os09t0279600-01
Chr09	irgsp1_rep	CDS	5879556	5879641	.	+	0	Parent=Os09t0279600-01
Chr09	irgsp1_rep	CDS	5879713	5879785	.	+	1	Parent=Os09t0279600-01
Chr09	irgsp1_rep	CDS	5881074	5881165	.	+	0	Parent=Os09t0279600-01
Chr09	irgsp1_rep	CDS	5881257	5881395	.	+	1	Parent=Os09t0279600-01
Chr09	irgsp1_rep	CDS	5881463	5881557	.	+	0	Parent=Os09t0279600-01
Chr09	irgsp1_rep	CDS	5881992	5882166	.	+	1	Parent=Os09t0279600-01
Chr09	irgsp1_rep	CDS	5882533	5882679	.	+	0	Parent=Os09t0279600-01
Chr09	irgsp1_rep	three_prime_UTR	5882680	5883020	.	+	.	Parent=Os09t0279600-01
Chr09	irgsp1_rep	mRNA	5883560	5884196	.	-	.	ID=Os09t0279800-01;Name=Os09t0279800-01;Locus_id=Os09g0279800;Note=Conserved hypothetical protein.;Transcript_evidence=AK107713 (DDBJ%2C Best hit);ORF_evidence=Q9FWL9 (UniProt);NIAS_FLcDNA=002-132-D12;Expression=AK107713;TENOR=Os09t0279800-01;KEGG=Os09t0279800-01
Chr09	irgsp1_rep	five_prime_UTR	5884055	5884196	.	-	.	Parent=Os09t0279800-01
Chr09	irgsp1_rep	CDS	5883659	5884054	.	-	0	Parent=Os09t0279800-01
Chr09	irgsp1_rep	three_prime_UTR	5883560	5883658	.	-	.	Parent=Os09t0279800-01
Chr09	irgsp1_rep	mRNA	5892707	5892997	.	+	.	ID=Os09t0279900-00;Name=Os09t0279900-00;Locus_id=Os09g0279900;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G2J2 (UniProt);TENOR=Os09t0279900-00;KEGG=Os09t0279900-00
Chr09	irgsp1_rep	CDS	5892707	5892997	.	+	0	Parent=Os09t0279900-00
Chr09	irgsp1_rep	mRNA	5900690	5905364	.	+	.	ID=Os09t0280300-01;Name=Os09t0280300-01;Locus_id=Os09g0280300;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK073346 (DDBJ%2C Best hit);ORF_evidence=NP_001149836.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Oxidoreductase%2C N-terminal (IPR000683),Oxidoreductase%2C C-terminal (IPR004104),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033030J06;Expression=AK073346;TENOR=Os09t0280300-01;KEGG=Os09t0280300-01
Chr09	irgsp1_rep	five_prime_UTR	5900690	5900718	.	+	.	Parent=Os09t0280300-01
Chr09	irgsp1_rep	CDS	5900719	5900847	.	+	0	Parent=Os09t0280300-01
Chr09	irgsp1_rep	CDS	5900920	5901060	.	+	0	Parent=Os09t0280300-01
Chr09	irgsp1_rep	CDS	5901848	5901896	.	+	0	Parent=Os09t0280300-01
Chr09	irgsp1_rep	CDS	5902051	5902068	.	+	2	Parent=Os09t0280300-01
Chr09	irgsp1_rep	CDS	5902163	5902278	.	+	2	Parent=Os09t0280300-01
Chr09	irgsp1_rep	CDS	5902357	5902470	.	+	0	Parent=Os09t0280300-01
Chr09	irgsp1_rep	CDS	5903238	5903288	.	+	0	Parent=Os09t0280300-01
Chr09	irgsp1_rep	CDS	5903934	5904022	.	+	0	Parent=Os09t0280300-01
Chr09	irgsp1_rep	CDS	5904099	5904159	.	+	1	Parent=Os09t0280300-01
Chr09	irgsp1_rep	CDS	5904291	5904368	.	+	0	Parent=Os09t0280300-01
Chr09	irgsp1_rep	CDS	5904522	5904629	.	+	0	Parent=Os09t0280300-01
Chr09	irgsp1_rep	CDS	5905020	5905145	.	+	0	Parent=Os09t0280300-01
Chr09	irgsp1_rep	three_prime_UTR	5905146	5905364	.	+	.	Parent=Os09t0280300-01
Chr09	irgsp1_rep	mRNA	5918077	5929773	.	+	.	ID=Os09t0280500-01;Name=Os09t0280500-01;Locus_id=Os09g0280500;CGSNL Gene Symbol=BZIP70;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 70;Oryzabase Gene Symbol Synonym(s)=OsbZIP70;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 70;Note=Similar to Transcription factor HBP-1b(C38) (Fragment).;Transcript_evidence=AK106988 (DDBJ%2C Best hit);ORF_evidence=A3BWV0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);NIAS_FLcDNA=002-120-A05;Oryzabase=10150;Expression=AK106988;TENOR=Os09t0280500-01;KEGG=Os09t0280500-01
Chr09	irgsp1_rep	five_prime_UTR	5918077	5918314	.	+	.	Parent=Os09t0280500-01
Chr09	irgsp1_rep	CDS	5918315	5918424	.	+	0	Parent=Os09t0280500-01
Chr09	irgsp1_rep	CDS	5919150	5919250	.	+	1	Parent=Os09t0280500-01
Chr09	irgsp1_rep	CDS	5920173	5920234	.	+	2	Parent=Os09t0280500-01
Chr09	irgsp1_rep	CDS	5920351	5920539	.	+	0	Parent=Os09t0280500-01
Chr09	irgsp1_rep	CDS	5920699	5920779	.	+	0	Parent=Os09t0280500-01
Chr09	irgsp1_rep	CDS	5920996	5921055	.	+	0	Parent=Os09t0280500-01
Chr09	irgsp1_rep	CDS	5921824	5921901	.	+	0	Parent=Os09t0280500-01
Chr09	irgsp1_rep	CDS	5922069	5922126	.	+	0	Parent=Os09t0280500-01
Chr09	irgsp1_rep	CDS	5922474	5922742	.	+	2	Parent=Os09t0280500-01
Chr09	irgsp1_rep	CDS	5926431	5926661	.	+	0	Parent=Os09t0280500-01
Chr09	irgsp1_rep	CDS	5929184	5929348	.	+	0	Parent=Os09t0280500-01
Chr09	irgsp1_rep	three_prime_UTR	5929349	5929773	.	+	.	Parent=Os09t0280500-01
Chr09	irgsp1_rep	mRNA	5935135	5940509	.	-	.	ID=Os09t0280600-01;Name=Os09t0280600-01;Locus_id=Os09g0280600;RAP-DB Gene Symbol Synonym(s)=OsMFS1;RAP-DB Gene Name Synonym(s)=male and female sterility 1;Oryzabase Gene Symbol Synonym(s)=MND1;Note=Homolog of MND1 (meiotic nuclear division protein 1)%2C Meiotic coiled-coil protein%2C Double-strand break (DSB) repair%2C Development of anther and embryo sacs;Transcript_evidence=AK070961;ORF_evidence=Q6H432;GO=Biological Process: reciprocal meiotic recombination (GO:0007131),Molecular Function: double-stranded DNA binding (GO:0003690);InterPro=Meiotic nuclear division protein 1 (IPR005647),Mnd1%2C HTH domain (IPR040453),Leucine zipper with capping helix domain (IPR040661);NIAS_FLcDNA=J023066B13;Manual Curation=June 8%2C 2020;Literature_PMID=32499797;Oryzabase=21315;Expression=AK070961;TENOR=Os09t0280600-01;KEGG=Os09t0280600-01;Subcellular location=nucleus (GO:0005634)
Chr09	irgsp1_rep	five_prime_UTR	5940419	5940509	.	-	.	Parent=Os09t0280600-01
Chr09	irgsp1_rep	CDS	5940416	5940418	.	-	0	Parent=Os09t0280600-01
Chr09	irgsp1_rep	CDS	5939686	5939766	.	-	0	Parent=Os09t0280600-01
Chr09	irgsp1_rep	CDS	5938938	5939054	.	-	0	Parent=Os09t0280600-01
Chr09	irgsp1_rep	CDS	5938616	5938654	.	-	0	Parent=Os09t0280600-01
Chr09	irgsp1_rep	CDS	5937929	5938036	.	-	0	Parent=Os09t0280600-01
Chr09	irgsp1_rep	CDS	5937796	5937858	.	-	0	Parent=Os09t0280600-01
Chr09	irgsp1_rep	CDS	5937661	5937712	.	-	0	Parent=Os09t0280600-01
Chr09	irgsp1_rep	CDS	5937413	5937457	.	-	2	Parent=Os09t0280600-01
Chr09	irgsp1_rep	CDS	5937235	5937314	.	-	2	Parent=Os09t0280600-01
Chr09	irgsp1_rep	CDS	5935331	5935366	.	-	0	Parent=Os09t0280600-01
Chr09	irgsp1_rep	three_prime_UTR	5935135	5935330	.	-	.	Parent=Os09t0280600-01
Chr09	irgsp1_rep	mRNA	5943105	5946887	.	+	.	ID=Os09t0280750-01;Name=Os09t0280750-01;Locus_id=Os09g0280750;Note=Non-protein coding transcript.;Transcript_evidence=AK242130 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J075148O06;TENOR=Os09t0280750-01
Chr09	irgsp1_rep	exon	5943105	5943220	.	+	.	Parent=Os09t0280750-01
Chr09	irgsp1_rep	exon	5943308	5943507	.	+	.	Parent=Os09t0280750-01
Chr09	irgsp1_rep	exon	5943585	5943696	.	+	.	Parent=Os09t0280750-01
Chr09	irgsp1_rep	exon	5945051	5945107	.	+	.	Parent=Os09t0280750-01
Chr09	irgsp1_rep	exon	5946598	5946887	.	+	.	Parent=Os09t0280750-01
Chr09	irgsp1_rep	mRNA	5991204	5996499	.	-	.	ID=Os09t0281300-02;Name=Os09t0281300-02;Locus_id=Os09g0281300;Note=Protein of unknown function DUF1218 family protein.;Transcript_evidence=AK072565 (DDBJ%2C Best hit),AK104141 (DDBJ%2C Best hit);ORF_evidence=NP_001148769.1 (RefSeq);NIAS_FLcDNA=J023131J22,006-205-E02;Expression=AK072565;TENOR=Os09t0281300-02;KEGG=Os09t0281300-02
Chr09	irgsp1_rep	five_prime_UTR	5996402	5996499	.	-	.	Parent=Os09t0281300-02
Chr09	irgsp1_rep	five_prime_UTR	5996236	5996292	.	-	.	Parent=Os09t0281300-02
Chr09	irgsp1_rep	CDS	5996131	5996235	.	-	0	Parent=Os09t0281300-02
Chr09	irgsp1_rep	CDS	5992013	5992215	.	-	0	Parent=Os09t0281300-02
Chr09	irgsp1_rep	CDS	5991657	5991921	.	-	1	Parent=Os09t0281300-02
Chr09	irgsp1_rep	three_prime_UTR	5991204	5991656	.	-	.	Parent=Os09t0281300-02
Chr09	irgsp1_rep	mRNA	5991724	5991936	.	+	.	ID=Os09t0281450-00;Name=Os09t0281450-00;Locus_id=Os09g0281450;Note=Non-protein coding transcript.;Transcript_evidence=BT086987 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0281450-00
Chr09	irgsp1_rep	exon	5991724	5991936	.	+	.	Parent=Os09t0281450-00
Chr09	irgsp1_rep	mRNA	6016427	6020349	.	+	.	ID=Os09t0281600-01;Name=Os09t0281600-01;Locus_id=Os09g0281600;Note=Similar to Gamma response I protein.;Transcript_evidence=AK067020 (DDBJ%2C Best hit);ORF_evidence=B6T4S9 (UniProt);NIAS_FLcDNA=J013092I17;TENOR=Os09t0281600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	6016427	6016793	.	+	.	Parent=Os09t0281600-01
Chr09	irgsp1_rep	CDS	6016794	6017408	.	+	0	Parent=Os09t0281600-01
Chr09	irgsp1_rep	three_prime_UTR	6017409	6018025	.	+	.	Parent=Os09t0281600-01
Chr09	irgsp1_rep	three_prime_UTR	6018182	6018288	.	+	.	Parent=Os09t0281600-01
Chr09	irgsp1_rep	three_prime_UTR	6018373	6018516	.	+	.	Parent=Os09t0281600-01
Chr09	irgsp1_rep	three_prime_UTR	6018888	6019010	.	+	.	Parent=Os09t0281600-01
Chr09	irgsp1_rep	three_prime_UTR	6019109	6019291	.	+	.	Parent=Os09t0281600-01
Chr09	irgsp1_rep	three_prime_UTR	6019728	6019906	.	+	.	Parent=Os09t0281600-01
Chr09	irgsp1_rep	three_prime_UTR	6019985	6020349	.	+	.	Parent=Os09t0281600-01
Chr09	irgsp1_rep	mRNA	6019865	6020335	.	+	.	ID=Os09t0281600-02;Name=Os09t0281600-02;Locus_id=Os09g0281600;Note=Similar to Gamma reponse I-like protein.;Transcript_evidence=AK062136 (DDBJ%2C Best hit);ORF_evidence=E0ZIA4 (UniProt);NIAS_FLcDNA=001-045-F06;Expression=AK062136;TENOR=Os09t0281600-02;KEGG=Os09t0281600-02
Chr09	irgsp1_rep	CDS	6019865	6019906	.	+	0	Parent=Os09t0281600-02
Chr09	irgsp1_rep	CDS	6019985	6020011	.	+	0	Parent=Os09t0281600-02
Chr09	irgsp1_rep	three_prime_UTR	6020012	6020335	.	+	.	Parent=Os09t0281600-02
Chr09	irgsp1_rep	mRNA	6018908	6020970	.	-	.	ID=Os09t0281650-01;Name=Os09t0281650-01;Locus_id=Os09g0281650;Note=Non-protein coding transcript.;Transcript_evidence=AK288483 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090040C18;TENOR=Os09t0281650-01
Chr09	irgsp1_rep	exon	6018908	6020970	.	-	.	Parent=Os09t0281650-01
Chr09	irgsp1_rep	mRNA	6021983	6025683	.	+	.	ID=Os09t0281700-01;Name=Os09t0281700-01;Locus_id=Os09g0281700;CGSNL Gene Symbol=RGP1;CGSNL Gene Name=SMALL GTP-BINDING PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=rgp1%2C OsRab11E2;Oryzabase Gene Name Synonym(s)=ras -related GPT-binding protein1%2C Ras-related protein RGP1%2C GTP-binding regulatory protein RGP1%2C small GTP-binding protein OsRab11E2;Note=Similar to Ras-related protein RGP1 (GTP-binding regulatory protein RGP1).;Transcript_evidence=AK068988 (DDBJ%2C Best hit);ORF_evidence=P25766 (UniProt);GO=Biological Process: small GTPase mediated signal transduction (GO:0007264),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806);NIAS_FLcDNA=J013170G19;Oryzabase=2284;Expression=AK068988;TENOR=Os09t0281700-01;KEGG=Os09t0281700-01
Chr09	irgsp1_rep	five_prime_UTR	6021983	6022391	.	+	.	Parent=Os09t0281700-01
Chr09	irgsp1_rep	CDS	6022392	6022544	.	+	0	Parent=Os09t0281700-01
Chr09	irgsp1_rep	CDS	6025108	6025443	.	+	0	Parent=Os09t0281700-01
Chr09	irgsp1_rep	three_prime_UTR	6025444	6025683	.	+	.	Parent=Os09t0281700-01
Chr09	irgsp1_rep	mRNA	6022428	6025337	.	-	.	ID=Os09t0281750-00;Name=Os09t0281750-00;Locus_id=Os09g0281750;Note=Hypothetical protein.;Transcript_evidence=BT084300 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0281750-00
Chr09	irgsp1_rep	five_prime_UTR	6025022	6025337	.	-	.	Parent=Os09t0281750-00
Chr09	irgsp1_rep	CDS	6025003	6025021	.	-	0	Parent=Os09t0281750-00
Chr09	irgsp1_rep	CDS	6022428	6022661	.	-	2	Parent=Os09t0281750-00
Chr09	irgsp1_rep	mRNA	6031213	6035121	.	+	.	ID=Os09t0281800-01;Name=Os09t0281800-01;Locus_id=Os09g0281800;Note=Conserved hypothetical protein.;Transcript_evidence=AK105291 (DDBJ%2C Best hit);ORF_evidence=A2YZB8 (UniProt);NIAS_FLcDNA=001-116-G05;Expression=AK105291;TENOR=Os09t0281800-01;KEGG=Os09t0281800-01
Chr09	irgsp1_rep	five_prime_UTR	6031213	6031325	.	+	.	Parent=Os09t0281800-01
Chr09	irgsp1_rep	CDS	6031326	6031647	.	+	0	Parent=Os09t0281800-01
Chr09	irgsp1_rep	CDS	6034030	6035030	.	+	2	Parent=Os09t0281800-01
Chr09	irgsp1_rep	three_prime_UTR	6035031	6035121	.	+	.	Parent=Os09t0281800-01
Chr09	irgsp1_rep	mRNA	6033956	6035032	.	-	.	ID=Os09t0281850-00;Name=Os09t0281850-00;Locus_id=Os09g0281850;Note=Hypothetical protein.;Transcript_evidence=AK361018 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0281850-00
Chr09	irgsp1_rep	five_prime_UTR	6035031	6035032	.	-	.	Parent=Os09t0281850-00
Chr09	irgsp1_rep	CDS	6033960	6035030	.	-	0	Parent=Os09t0281850-00
Chr09	irgsp1_rep	three_prime_UTR	6033956	6033959	.	-	.	Parent=Os09t0281850-00
Chr09	irgsp1_rep	mRNA	6037938	6049276	.	-	.	ID=Os09t0281900-01;Name=Os09t0281900-01;Locus_id=Os09g0281900;Oryzabase Gene Symbol Synonym(s)=OsMed14_2%2C Med14_2;Oryzabase Gene Name Synonym(s)=Mediator 14_2;Note=Thyroid hormone receptor-associated protein complex component TRAP170- like protein.;Transcript_evidence=AK121112 (DDBJ%2C Best hit);ORF_evidence=NP_187125.1 (RefSeq);GO=Biological Process: regulation of transcription from RNA polymerase II promoter (GO:0006357),Cellular Component: mediator complex (GO:0016592),Molecular Function: RNA polymerase II transcription cofactor activity (GO:0001104);InterPro=Mediator complex%2C subunit Med14 (IPR013947);NIAS_FLcDNA=J023073I01;Oryzabase=20975;Expression=AK121112;TENOR=Os09t0281900-01;KEGG=Os09t0281900-01
Chr09	irgsp1_rep	five_prime_UTR	6048895	6049276	.	-	.	Parent=Os09t0281900-01
Chr09	irgsp1_rep	CDS	6048646	6048894	.	-	0	Parent=Os09t0281900-01
Chr09	irgsp1_rep	CDS	6046579	6047652	.	-	0	Parent=Os09t0281900-01
Chr09	irgsp1_rep	CDS	6045107	6045204	.	-	0	Parent=Os09t0281900-01
Chr09	irgsp1_rep	CDS	6043987	6044161	.	-	1	Parent=Os09t0281900-01
Chr09	irgsp1_rep	CDS	6042615	6043416	.	-	0	Parent=Os09t0281900-01
Chr09	irgsp1_rep	CDS	6040988	6041964	.	-	2	Parent=Os09t0281900-01
Chr09	irgsp1_rep	CDS	6039855	6040906	.	-	0	Parent=Os09t0281900-01
Chr09	irgsp1_rep	CDS	6038316	6039111	.	-	1	Parent=Os09t0281900-01
Chr09	irgsp1_rep	three_prime_UTR	6037938	6038315	.	-	.	Parent=Os09t0281900-01
Chr09	irgsp1_rep	mRNA	6037941	6042988	.	-	.	ID=Os09t0281900-02;Name=Os09t0281900-02;Locus_id=Os09g0281900;Oryzabase Gene Symbol Synonym(s)=OsMed14_2%2C Med14_2;Oryzabase Gene Name Synonym(s)=Mediator 14_2;Note=Similar to SWP (STRUWWELPETER).;Transcript_evidence=AK102936 (DDBJ%2C Best hit);ORF_evidence=NP_187125.1 (RefSeq);NIAS_FLcDNA=J033114J09;Oryzabase=20975;TENOR=Os09t0281900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	6042615	6042988	.	-	.	Parent=Os09t0281900-02
Chr09	irgsp1_rep	five_prime_UTR	6041945	6041964	.	-	.	Parent=Os09t0281900-02
Chr09	irgsp1_rep	CDS	6040988	6041944	.	-	0	Parent=Os09t0281900-02
Chr09	irgsp1_rep	CDS	6039855	6040906	.	-	0	Parent=Os09t0281900-02
Chr09	irgsp1_rep	CDS	6038316	6039111	.	-	1	Parent=Os09t0281900-02
Chr09	irgsp1_rep	three_prime_UTR	6037941	6038315	.	-	.	Parent=Os09t0281900-02
Chr09	irgsp1_rep	mRNA	6061844	6062278	.	-	.	ID=Os09t0282100-00;Name=Os09t0282100-00;Locus_id=Os09g0282100;Note=Similar to WIP1.;Transcript_evidence=ab initio prediction;ORF_evidence=D0UIX1 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087);TENOR=Os09t0282100-00
Chr09	irgsp1_rep	CDS	6061844	6062278	.	-	0	Parent=Os09t0282100-00
Chr09	irgsp1_rep	mRNA	6066348	6066866	.	-	.	ID=Os09t0282300-00;Name=Os09t0282300-00;Locus_id=Os09g0282300;Note=Zinc finger%2C C2H2-type/integrase%2C DNA-binding domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2YZC0 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087);TENOR=Os09t0282300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	6066348	6066866	.	-	0	Parent=Os09t0282300-00
Chr09	irgsp1_rep	mRNA	6093915	6095172	.	-	.	ID=Os09t0282701-00;Name=Os09t0282701-00;Locus_id=Os09g0282701;Note=Similar to cDNA clone:001-102-C05%2C full insert sequence.;Transcript_evidence=CT835893 (DDBJ%2C Best hit);ORF_evidence=B7E7M9 (UniProt);TENOR=Os09t0282701-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	6094823	6095172	.	-	.	Parent=Os09t0282701-00
Chr09	irgsp1_rep	CDS	6094724	6094822	.	-	0	Parent=Os09t0282701-00
Chr09	irgsp1_rep	CDS	6093992	6094120	.	-	0	Parent=Os09t0282701-00
Chr09	irgsp1_rep	three_prime_UTR	6093915	6093991	.	-	.	Parent=Os09t0282701-00
Chr09	irgsp1_rep	mRNA	6173369	6176853	.	-	.	ID=Os09t0283200-01;Name=Os09t0283200-01;Locus_id=Os09g0283200;Note=Hypothetical conserved gene.;Transcript_evidence=AK288937 (DDBJ%2C Best hit);ORF_evidence=B9G2K5 (UniProt);NIAS_FLcDNA=J090082N15;TENOR=Os09t0283200-01;KEGG=Os09t0283200-01
Chr09	irgsp1_rep	five_prime_UTR	6175851	6176853	.	-	.	Parent=Os09t0283200-01
Chr09	irgsp1_rep	CDS	6175668	6175850	.	-	0	Parent=Os09t0283200-01
Chr09	irgsp1_rep	three_prime_UTR	6173369	6175667	.	-	.	Parent=Os09t0283200-01
Chr09	irgsp1_rep	mRNA	6195158	6196917	.	+	.	ID=Os09t0283600-01;Name=Os09t0283600-01;Locus_id=Os09g0283600;Note=Zinc finger%2C C6HC-type domain containing protein.;Transcript_evidence=AK069582 (DDBJ%2C Best hit);ORF_evidence=B6U4B5 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C C6HC-type (IPR002867),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907);NIAS_FLcDNA=J023021A17;Expression=AK069582;TENOR=Os09t0283600-01;KEGG=Os09t0283600-01
Chr09	irgsp1_rep	five_prime_UTR	6195158	6195235	.	+	.	Parent=Os09t0283600-01
Chr09	irgsp1_rep	CDS	6195236	6196125	.	+	0	Parent=Os09t0283600-01
Chr09	irgsp1_rep	CDS	6196494	6196599	.	+	1	Parent=Os09t0283600-01
Chr09	irgsp1_rep	three_prime_UTR	6196600	6196917	.	+	.	Parent=Os09t0283600-01
Chr09	irgsp1_rep	mRNA	6198764	6200877	.	-	.	ID=Os09t0283801-01;Name=Os09t0283801-01;Locus_id=Os09g0283801;Note=Hypothetical conserved gene.;Transcript_evidence=AK241575 (DDBJ%2C Best hit);ORF_evidence=B8BA89 (UniProt);NIAS_FLcDNA=J065180J09;TENOR=Os09t0283801-01;KEGG=Os09t0283801-01
Chr09	irgsp1_rep	five_prime_UTR	6200702	6200877	.	-	.	Parent=Os09t0283801-01
Chr09	irgsp1_rep	five_prime_UTR	6200363	6200443	.	-	.	Parent=Os09t0283801-01
Chr09	irgsp1_rep	CDS	6200342	6200362	.	-	0	Parent=Os09t0283801-01
Chr09	irgsp1_rep	CDS	6198931	6199134	.	-	0	Parent=Os09t0283801-01
Chr09	irgsp1_rep	three_prime_UTR	6198764	6198930	.	-	.	Parent=Os09t0283801-01
Chr09	irgsp1_rep	mRNA	6201048	6202835	.	+	.	ID=Os09t0283850-01;Name=Os09t0283850-01;Locus_id=Os09g0283850;Note=Hypothetical gene.;Transcript_evidence=AK240835 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065015M22;TENOR=Os09t0283850-01;KEGG=Os09t0283850-01
Chr09	irgsp1_rep	five_prime_UTR	6201048	6202173	.	+	.	Parent=Os09t0283850-01
Chr09	irgsp1_rep	CDS	6202174	6202392	.	+	0	Parent=Os09t0283850-01
Chr09	irgsp1_rep	three_prime_UTR	6202393	6202835	.	+	.	Parent=Os09t0283850-01
Chr09	irgsp1_rep	mRNA	6233897	6238847	.	+	.	ID=Os09t0284200-01;Name=Os09t0284200-01;Locus_id=Os09g0284200;Oryzabase Gene Symbol Synonym(s)=OsPP106;Oryzabase Gene Name Synonym(s)=Protein phosphatase 106;Note=Similar to Serine/threonine protein phosphatase PP-X isozyme 2 (EC 3.1.3.16).;Transcript_evidence=AK073644 (DDBJ%2C Best hit);ORF_evidence=C5X8B4 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Metallophosphoesterase domain (IPR004843),Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (IPR006186);NIAS_FLcDNA=J033052N08;Oryzabase=18653;Expression=AK073644;TENOR=Os09t0284200-01;KEGG=Os09t0284200-01 (EC:3.1.3.16)
Chr09	irgsp1_rep	five_prime_UTR	6233897	6234056	.	+	.	Parent=Os09t0284200-01
Chr09	irgsp1_rep	CDS	6234057	6234203	.	+	0	Parent=Os09t0284200-01
Chr09	irgsp1_rep	CDS	6236226	6236378	.	+	0	Parent=Os09t0284200-01
Chr09	irgsp1_rep	CDS	6237109	6237171	.	+	0	Parent=Os09t0284200-01
Chr09	irgsp1_rep	CDS	6237253	6237336	.	+	0	Parent=Os09t0284200-01
Chr09	irgsp1_rep	CDS	6237430	6237504	.	+	0	Parent=Os09t0284200-01
Chr09	irgsp1_rep	CDS	6237581	6237852	.	+	0	Parent=Os09t0284200-01
Chr09	irgsp1_rep	CDS	6238243	6238321	.	+	1	Parent=Os09t0284200-01
Chr09	irgsp1_rep	CDS	6238401	6238451	.	+	0	Parent=Os09t0284200-01
Chr09	irgsp1_rep	three_prime_UTR	6238452	6238847	.	+	.	Parent=Os09t0284200-01
Chr09	irgsp1_rep	mRNA	6238279	6238918	.	+	.	ID=Os09t0284200-02;Name=Os09t0284200-02;Locus_id=Os09g0284200;Oryzabase Gene Symbol Synonym(s)=OsPP106;Oryzabase Gene Name Synonym(s)=Protein phosphatase 106;Note=Similar to Serine/threonine protein phosphatase.;Transcript_evidence=AK063810 (DDBJ%2C Best hit);ORF_evidence=C5X8B4 (UniProt);NIAS_FLcDNA=001-121-G09;Oryzabase=18653;Expression=AK063810;TENOR=Os09t0284200-02;KEGG=Os09t0284200-02 (EC:3.1.3.16)
Chr09	irgsp1_rep	five_prime_UTR	6238279	6238279	.	+	.	Parent=Os09t0284200-02
Chr09	irgsp1_rep	CDS	6238280	6238321	.	+	0	Parent=Os09t0284200-02
Chr09	irgsp1_rep	CDS	6238401	6238451	.	+	0	Parent=Os09t0284200-02
Chr09	irgsp1_rep	three_prime_UTR	6238452	6238918	.	+	.	Parent=Os09t0284200-02
Chr09	irgsp1_rep	mRNA	6240108	6242559	.	+	.	ID=Os09t0284250-01;Name=Os09t0284250-01;Locus_id=Os09g0284250;Note=Hypothetical gene.;Transcript_evidence=AK241483 (DDBJ%2C Best hit);ORF_evidence=Q9SNJ2 (UniProt);NIAS_FLcDNA=J065166I24;TENOR=Os09t0284250-01;KEGG=Os09t0284250-01
Chr09	irgsp1_rep	five_prime_UTR	6240108	6240108	.	+	.	Parent=Os09t0284250-01
Chr09	irgsp1_rep	CDS	6240109	6240543	.	+	0	Parent=Os09t0284250-01
Chr09	irgsp1_rep	three_prime_UTR	6240544	6240679	.	+	.	Parent=Os09t0284250-01
Chr09	irgsp1_rep	three_prime_UTR	6241011	6241075	.	+	.	Parent=Os09t0284250-01
Chr09	irgsp1_rep	three_prime_UTR	6242237	6242559	.	+	.	Parent=Os09t0284250-01
Chr09	irgsp1_rep	mRNA	6243180	6245883	.	+	.	ID=Os09t0284300-01;Name=Os09t0284300-01;Locus_id=Os09g0284300;Note=Conserved hypothetical protein.;Transcript_evidence=AK059004 (DDBJ%2C Best hit);ORF_evidence=B8BDS6 (UniProt);NIAS_FLcDNA=001-020-H03;Expression=AK059004;TENOR=Os09t0284300-01;KEGG=Os09t0284300-01
Chr09	irgsp1_rep	five_prime_UTR	6243180	6243323	.	+	.	Parent=Os09t0284300-01
Chr09	irgsp1_rep	CDS	6243324	6243617	.	+	0	Parent=Os09t0284300-01
Chr09	irgsp1_rep	CDS	6245464	6245637	.	+	0	Parent=Os09t0284300-01
Chr09	irgsp1_rep	three_prime_UTR	6245638	6245883	.	+	.	Parent=Os09t0284300-01
Chr09	irgsp1_rep	mRNA	6243219	6245883	.	+	.	ID=Os09t0284300-02;Name=Os09t0284300-02;Locus_id=Os09g0284300;Note=Conserved hypothetical protein.;Transcript_evidence=AK098995 (DDBJ%2C Best hit);ORF_evidence=B8BDS6 (UniProt);NIAS_FLcDNA=J013096L11;Expression=AK098995;TENOR=Os09t0284300-02;KEGG=Os09t0284300-02
Chr09	irgsp1_rep	five_prime_UTR	6243219	6243323	.	+	.	Parent=Os09t0284300-02
Chr09	irgsp1_rep	CDS	6243324	6243617	.	+	0	Parent=Os09t0284300-02
Chr09	irgsp1_rep	CDS	6245464	6245637	.	+	0	Parent=Os09t0284300-02
Chr09	irgsp1_rep	three_prime_UTR	6245638	6245883	.	+	.	Parent=Os09t0284300-02
Chr09	irgsp1_rep	mRNA	6246356	6249737	.	-	.	ID=Os09t0284400-01;Name=Os09t0284400-01;Locus_id=Os09g0284400;Note=GrpE nucleotide exchange factor domain containing protein.;Transcript_evidence=AK110658 (DDBJ%2C Best hit);ORF_evidence=A2YZD8 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: adenyl-nucleotide exchange factor activity (GO:0000774),Molecular Function: protein homodimerization activity (GO:0042803),Molecular Function: chaperone binding (GO:0051087);InterPro=GrpE nucleotide exchange factor (IPR000740),GrpE nucleotide exchange factor%2C head (IPR009012),GrpE nucleotide exchange factor%2C coiled-coil (IPR013805);NIAS_FLcDNA=002-169-E11;Expression=AK110658;TENOR=Os09t0284400-01;KEGG=Os09t0284400-01
Chr09	irgsp1_rep	five_prime_UTR	6249651	6249737	.	-	.	Parent=Os09t0284400-01
Chr09	irgsp1_rep	CDS	6249495	6249650	.	-	0	Parent=Os09t0284400-01
Chr09	irgsp1_rep	CDS	6248325	6248469	.	-	0	Parent=Os09t0284400-01
Chr09	irgsp1_rep	CDS	6248021	6248211	.	-	2	Parent=Os09t0284400-01
Chr09	irgsp1_rep	CDS	6247716	6247883	.	-	0	Parent=Os09t0284400-01
Chr09	irgsp1_rep	CDS	6247434	6247562	.	-	0	Parent=Os09t0284400-01
Chr09	irgsp1_rep	CDS	6246512	6246631	.	-	0	Parent=Os09t0284400-01
Chr09	irgsp1_rep	three_prime_UTR	6246356	6246511	.	-	.	Parent=Os09t0284400-01
Chr09	irgsp1_rep	mRNA	6252094	6260858	.	-	.	ID=Os09t0284600-01;Name=Os09t0284600-01;Locus_id=Os09g0284600;Note=Similar to enhancer of polycomb-like protein101.;Transcript_evidence=AK072349 (DDBJ%2C Best hit);ORF_evidence=NP_001105080.1 (RefSeq);InterPro=Enhancer of polycomb-like%2C N-terminal (IPR019542);NIAS_FLcDNA=J023050K09;TENOR=Os09t0284600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	6260439	6260858	.	-	.	Parent=Os09t0284600-01
Chr09	irgsp1_rep	CDS	6260247	6260438	.	-	0	Parent=Os09t0284600-01
Chr09	irgsp1_rep	CDS	6259412	6259541	.	-	0	Parent=Os09t0284600-01
Chr09	irgsp1_rep	CDS	6259229	6259331	.	-	2	Parent=Os09t0284600-01
Chr09	irgsp1_rep	CDS	6258712	6258835	.	-	1	Parent=Os09t0284600-01
Chr09	irgsp1_rep	CDS	6257233	6257298	.	-	0	Parent=Os09t0284600-01
Chr09	irgsp1_rep	CDS	6256948	6257019	.	-	0	Parent=Os09t0284600-01
Chr09	irgsp1_rep	three_prime_UTR	6255155	6256947	.	-	.	Parent=Os09t0284600-01
Chr09	irgsp1_rep	three_prime_UTR	6254144	6254194	.	-	.	Parent=Os09t0284600-01
Chr09	irgsp1_rep	three_prime_UTR	6253984	6254052	.	-	.	Parent=Os09t0284600-01
Chr09	irgsp1_rep	three_prime_UTR	6253199	6253447	.	-	.	Parent=Os09t0284600-01
Chr09	irgsp1_rep	three_prime_UTR	6252094	6252747	.	-	.	Parent=Os09t0284600-01
Chr09	irgsp1_rep	mRNA	6266117	6266662	.	+	.	ID=Os09t0284800-00;Name=Os09t0284800-00;Locus_id=Os09g0284800;Note=Hypothetical conserved gene.;Transcript_evidence=BT018506 (DDBJ);ORF_evidence=A3BWY0 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os09t0284800-00;KEGG=Os09t0284800-00
Chr09	irgsp1_rep	five_prime_UTR	6266117	6266197	.	+	.	Parent=Os09t0284800-00
Chr09	irgsp1_rep	CDS	6266198	6266539	.	+	0	Parent=Os09t0284800-00
Chr09	irgsp1_rep	three_prime_UTR	6266540	6266662	.	+	.	Parent=Os09t0284800-00
Chr09	irgsp1_rep	mRNA	6323254	6323796	.	+	.	ID=Os09t0285800-01;Name=Os09t0285800-01;Locus_id=Os09g0285800;Note=Hypothetical protein.;Transcript_evidence=AK071578 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023107G07;Expression=AK071578;TENOR=Os09t0285800-01;KEGG=Os09t0285800-01
Chr09	irgsp1_rep	five_prime_UTR	6323254	6323328	.	+	.	Parent=Os09t0285800-01
Chr09	irgsp1_rep	CDS	6323329	6323598	.	+	0	Parent=Os09t0285800-01
Chr09	irgsp1_rep	three_prime_UTR	6323599	6323796	.	+	.	Parent=Os09t0285800-01
Chr09	irgsp1_rep	mRNA	6368337	6371361	.	-	.	ID=Os09t0286300-00;Name=Os09t0286300-00;Locus_id=Os09g0286300;Note=Hypothetical conserved gene.;Transcript_evidence=CT835838 (DDBJ%2C Best hit);ORF_evidence=NP_001062779.2 (RefSeq);InterPro=Protein of unknown function DUF566 (IPR007573);TENOR=Os09t0286300-00;KEGG=Os09t0286300-00
Chr09	irgsp1_rep	five_prime_UTR	6371258	6371361	.	-	.	Parent=Os09t0286300-00
Chr09	irgsp1_rep	CDS	6371224	6371257	.	-	0	Parent=Os09t0286300-00
Chr09	irgsp1_rep	CDS	6370262	6371217	.	-	2	Parent=Os09t0286300-00
Chr09	irgsp1_rep	CDS	6370028	6370147	.	-	0	Parent=Os09t0286300-00
Chr09	irgsp1_rep	CDS	6369314	6369430	.	-	0	Parent=Os09t0286300-00
Chr09	irgsp1_rep	CDS	6369055	6369204	.	-	0	Parent=Os09t0286300-00
Chr09	irgsp1_rep	three_prime_UTR	6368753	6369054	.	-	.	Parent=Os09t0286300-00
Chr09	irgsp1_rep	three_prime_UTR	6368337	6368679	.	-	.	Parent=Os09t0286300-00
Chr09	irgsp1_rep	mRNA	6374327	6383568	.	-	.	ID=Os09t0286400-01;Name=Os09t0286400-01;Locus_id=Os09g0286400;RAP-DB Gene Symbol Synonym(s)=OsNHX5%2C GPA6;RAP-DB Gene Name Synonym(s)=Na<sup>+</sup>/H<sup>+</sup> antiporter 5%2C glutelin precursor accumulation6;CGSNL Gene Symbol=GPA6;CGSNL Gene Name=GLUTELIN PRECURSOR ACCUMULATION 6;Oryzabase Gene Symbol Synonym(s)=OsNHX5%2C NHX5%2C OsGPA6;Oryzabase Gene Name Synonym(s)=Na+/H+ antiporter 5%2C NHX-type antiporter 5%2C glutelin precursor accumulation6;Note=Na<sup>+</sup>/H<sup>+</sup> antiporter%2C Endomembrane luminal pH homeostasis%2C Proglutelin vacuolar trafficking;Transcript_evidence=AK072114,AB531434;ORF_evidence=Q0J2X1;GO=Biological Process: cation transport (GO:0006812),Biological Process: sodium ion transport (GO:0006814),Biological Process: regulation of pH (GO:0006885),Biological Process: transmembrane transport (GO:0055085),Molecular Function: solute:proton antiporter activity (GO:0015299),Molecular Function: sodium:proton antiporter activity (GO:0015385),Cellular Component: integral component of membrane (GO:0016021);InterPro=Na+/H+ exchanger (IPR004709),Cation/H+ exchanger (IPR006153);NIAS_FLcDNA=J013124C16;Manual Curation=July 9%2C 2019;Literature_PMID=31277576,20963607;Oryzabase=11248;Expression=AK072114;TENOR=Os09t0286400-01;KEGG=Os09t0286400-01;Subcellular location=Golgi apparatus (GO:0005794), trans-Golgi network (TGN) (GO:0005802), prevacuolar compartment (PVC) (GO:0005770)
Chr09	irgsp1_rep	five_prime_UTR	6383439	6383568	.	-	.	Parent=Os09t0286400-01
Chr09	irgsp1_rep	CDS	6383222	6383438	.	-	0	Parent=Os09t0286400-01
Chr09	irgsp1_rep	CDS	6381430	6381481	.	-	2	Parent=Os09t0286400-01
Chr09	irgsp1_rep	CDS	6381181	6381240	.	-	1	Parent=Os09t0286400-01
Chr09	irgsp1_rep	CDS	6381060	6381084	.	-	1	Parent=Os09t0286400-01
Chr09	irgsp1_rep	CDS	6380899	6380984	.	-	0	Parent=Os09t0286400-01
Chr09	irgsp1_rep	CDS	6380709	6380820	.	-	1	Parent=Os09t0286400-01
Chr09	irgsp1_rep	CDS	6379155	6379217	.	-	0	Parent=Os09t0286400-01
Chr09	irgsp1_rep	CDS	6379048	6379067	.	-	0	Parent=Os09t0286400-01
Chr09	irgsp1_rep	CDS	6378878	6378975	.	-	1	Parent=Os09t0286400-01
Chr09	irgsp1_rep	CDS	6378366	6378394	.	-	2	Parent=Os09t0286400-01
Chr09	irgsp1_rep	CDS	6377876	6377907	.	-	0	Parent=Os09t0286400-01
Chr09	irgsp1_rep	CDS	6377726	6377773	.	-	1	Parent=Os09t0286400-01
Chr09	irgsp1_rep	CDS	6377591	6377651	.	-	1	Parent=Os09t0286400-01
Chr09	irgsp1_rep	CDS	6377387	6377484	.	-	0	Parent=Os09t0286400-01
Chr09	irgsp1_rep	CDS	6377226	6377301	.	-	1	Parent=Os09t0286400-01
Chr09	irgsp1_rep	CDS	6377109	6377128	.	-	0	Parent=Os09t0286400-01
Chr09	irgsp1_rep	CDS	6376271	6376368	.	-	1	Parent=Os09t0286400-01
Chr09	irgsp1_rep	CDS	6376079	6376188	.	-	2	Parent=Os09t0286400-01
Chr09	irgsp1_rep	CDS	6375572	6375649	.	-	0	Parent=Os09t0286400-01
Chr09	irgsp1_rep	CDS	6375165	6375262	.	-	0	Parent=Os09t0286400-01
Chr09	irgsp1_rep	CDS	6374999	6375081	.	-	1	Parent=Os09t0286400-01
Chr09	irgsp1_rep	CDS	6374750	6374793	.	-	2	Parent=Os09t0286400-01
Chr09	irgsp1_rep	three_prime_UTR	6374327	6374749	.	-	.	Parent=Os09t0286400-01
Chr09	irgsp1_rep	mRNA	6384146	6384491	.	-	.	ID=Os09t0286501-00;Name=Os09t0286501-00;Locus_id=Os09g0286501;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os09t0286501-00
Chr09	irgsp1_rep	CDS	6384392	6384491	.	-	0	Parent=Os09t0286501-00
Chr09	irgsp1_rep	CDS	6384146	6384273	.	-	2	Parent=Os09t0286501-00
Chr09	irgsp1_rep	mRNA	6388158	6389789	.	-	.	ID=Os09t0286600-01;Name=Os09t0286600-01;Locus_id=Os09g0286600;CGSNL Gene Symbol=SUB1C;CGSNL Gene Name=SUBMERGENCE 1C;Oryzabase Gene Symbol Synonym(s)=Sub1C%2C OsERF#073%2C OsERF073%2C ERF073%2C OsERF73%2C ERF73%2C AP2/EREBP#122%2C AP2/EREBP122;Oryzabase Gene Name Synonym(s)=submergence-1C%2C ethylene response factor 73%2C APETALA2/ethylene-responsive element binding protein 122;Note=Pathogenesis-related transcriptional factor and ERF domain containing protein.;Transcript_evidence=AK072749 (DDBJ%2C Best hit);ORF_evidence=B1PI84 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J023139A06;Oryzabase=7119;Expression=AK072749;TENOR=Os09t0286600-01;KEGG=Os09t0286600-01
Chr09	irgsp1_rep	five_prime_UTR	6389654	6389789	.	-	.	Parent=Os09t0286600-01
Chr09	irgsp1_rep	CDS	6388955	6389653	.	-	0	Parent=Os09t0286600-01
Chr09	irgsp1_rep	three_prime_UTR	6388934	6388954	.	-	.	Parent=Os09t0286600-01
Chr09	irgsp1_rep	three_prime_UTR	6388158	6388432	.	-	.	Parent=Os09t0286600-01
Chr09	irgsp1_rep	mRNA	6388205	6389719	.	-	.	ID=Os09t0286600-02;Name=Os09t0286600-02;Locus_id=Os09g0286600;CGSNL Gene Symbol=SUB1C;CGSNL Gene Name=SUBMERGENCE 1C;Oryzabase Gene Symbol Synonym(s)=Sub1C%2C OsERF#073%2C OsERF073%2C ERF073%2C OsERF73%2C ERF73%2C AP2/EREBP#122%2C AP2/EREBP122;Oryzabase Gene Name Synonym(s)=submergence-1C%2C ethylene response factor 73%2C APETALA2/ethylene-responsive element binding protein 122;Note=Pathogenesis-related transcriptional factor and ERF domain containing protein.;Transcript_evidence=AK065344 (DDBJ%2C Best hit);ORF_evidence=B1PI84 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J013007H05;Oryzabase=7119;Expression=AK065344;TENOR=Os09t0286600-02;KEGG=Os09t0286600-02
Chr09	irgsp1_rep	five_prime_UTR	6389654	6389719	.	-	.	Parent=Os09t0286600-02
Chr09	irgsp1_rep	CDS	6388955	6389653	.	-	0	Parent=Os09t0286600-02
Chr09	irgsp1_rep	three_prime_UTR	6388205	6388954	.	-	.	Parent=Os09t0286600-02
Chr09	irgsp1_rep	mRNA	6387891	6389632	.	-	.	ID=Os09t0286600-03;Name=Os09t0286600-03;Locus_id=Os09g0286600;CGSNL Gene Symbol=SUB1C;CGSNL Gene Name=SUBMERGENCE 1C;Oryzabase Gene Symbol Synonym(s)=Sub1C%2C OsERF#073%2C OsERF073%2C ERF073%2C OsERF73%2C ERF73%2C AP2/EREBP#122%2C AP2/EREBP122;Oryzabase Gene Name Synonym(s)=submergence-1C%2C ethylene response factor 73%2C APETALA2/ethylene-responsive element binding protein 122;Note=Pathogenesis-related transcriptional factor and ERF domain containing protein.;Transcript_evidence=AK060090 (DDBJ%2C Best hit);ORF_evidence=B1PI84 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=006-307-A04;Oryzabase=7119;Expression=AK060090;TENOR=Os09t0286600-03;KEGG=Os09t0286600-03
Chr09	irgsp1_rep	CDS	6388955	6389632	.	-	0	Parent=Os09t0286600-03
Chr09	irgsp1_rep	three_prime_UTR	6388934	6388954	.	-	.	Parent=Os09t0286600-03
Chr09	irgsp1_rep	three_prime_UTR	6387891	6388432	.	-	.	Parent=Os09t0286600-03
Chr09	irgsp1_rep	mRNA	6404482	6406039	.	-	.	ID=Os09t0287000-01;Name=Os09t0287000-01;Locus_id=Os09g0287000;CGSNL Gene Symbol=SUB1B;CGSNL Gene Name=SUBMERGENCE 1B;Oryzabase Gene Symbol Synonym(s)=Sub1B%2C OsERF#063%2C OsERF063%2C ERF063%2C OsERF63%2C ERF63%2C AP2/EREBP#166%2C AP2/EREBP166;Oryzabase Gene Name Synonym(s)=submergence-1B%2C ethylene response factor 63%2C APETALA2/ethylene-responsive element binding protein 166;Note=Similar to Ethylene-responsive transcription factor 5 (Ethylene-responsive element binding factor 5) (EREBP-5) (AtERF5).;Transcript_evidence=AK106057 (DDBJ%2C Best hit),AK068688 (DDBJ%2C Best hit);ORF_evidence=B1PI82 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=001-206-F09,J013163J01;Oryzabase=7118;TENOR=Os09t0287000-01
Chr09	irgsp1_rep	five_prime_UTR	6405951	6406039	.	-	.	Parent=Os09t0287000-01
Chr09	irgsp1_rep	CDS	6405213	6405950	.	-	0	Parent=Os09t0287000-01
Chr09	irgsp1_rep	CDS	6404747	6404761	.	-	0	Parent=Os09t0287000-01
Chr09	irgsp1_rep	three_prime_UTR	6404482	6404746	.	-	.	Parent=Os09t0287000-01
Chr09	irgsp1_rep	mRNA	6434671	6438886	.	-	.	ID=Os09t0287300-01;Name=Os09t0287300-01;Locus_id=Os09g0287300;Note=Similar to predicted protein.;Transcript_evidence=AK288187 (DDBJ%2C Best hit);ORF_evidence=B8BDY2 (UniProt);InterPro=Histidine phosphatase superfamily%2C clade-1 (IPR013078);NIAS_FLcDNA=J090006G21;TENOR=Os09t0287300-01;KEGG=Os09t0287300-01
Chr09	irgsp1_rep	five_prime_UTR	6438807	6438886	.	-	.	Parent=Os09t0287300-01
Chr09	irgsp1_rep	CDS	6438503	6438806	.	-	0	Parent=Os09t0287300-01
Chr09	irgsp1_rep	CDS	6437402	6437501	.	-	2	Parent=Os09t0287300-01
Chr09	irgsp1_rep	CDS	6436730	6436909	.	-	1	Parent=Os09t0287300-01
Chr09	irgsp1_rep	CDS	6436506	6436623	.	-	1	Parent=Os09t0287300-01
Chr09	irgsp1_rep	CDS	6434890	6434946	.	-	0	Parent=Os09t0287300-01
Chr09	irgsp1_rep	three_prime_UTR	6434671	6434889	.	-	.	Parent=Os09t0287300-01
Chr09	irgsp1_rep	mRNA	6439640	6441905	.	-	.	ID=Os09t0287500-01;Name=Os09t0287500-01;Locus_id=Os09g0287500;Note=Protein of unknown function DUF565 family protein.;Transcript_evidence=AK059944 (DDBJ%2C Best hit);ORF_evidence=Q0P165 (UniProt);InterPro=Uncharacterised protein family Ycf20 (IPR007572);NIAS_FLcDNA=006-210-G07;Expression=AK059944;TENOR=Os09t0287500-01;KEGG=Os09t0287500-01
Chr09	irgsp1_rep	five_prime_UTR	6441830	6441905	.	-	.	Parent=Os09t0287500-01
Chr09	irgsp1_rep	CDS	6441681	6441829	.	-	0	Parent=Os09t0287500-01
Chr09	irgsp1_rep	CDS	6439946	6440387	.	-	1	Parent=Os09t0287500-01
Chr09	irgsp1_rep	three_prime_UTR	6439640	6439945	.	-	.	Parent=Os09t0287500-01
Chr09	irgsp1_rep	mRNA	6552407	6553005	.	+	.	ID=Os09t0289100-00;Name=Os09t0289100-00;Locus_id=Os09g0289100;Note=Conserved hypothetical protein.;Transcript_evidence=AK368310 (DDBJ);ORF_evidence=Q0P178 (UniProt);TENOR=Os09t0289100-00
Chr09	irgsp1_rep	five_prime_UTR	6552407	6552517	.	+	.	Parent=Os09t0289100-00
Chr09	irgsp1_rep	five_prime_UTR	6552598	6552684	.	+	.	Parent=Os09t0289100-00
Chr09	irgsp1_rep	CDS	6552685	6552819	.	+	0	Parent=Os09t0289100-00
Chr09	irgsp1_rep	three_prime_UTR	6552820	6553005	.	+	.	Parent=Os09t0289100-00
Chr09	irgsp1_rep	mRNA	6673037	6678975	.	+	.	ID=Os09t0290900-01;Name=Os09t0290900-01;Locus_id=Os09g0290900;Note=Similar to H1005F08.16 protein.;Transcript_evidence=AK100657 (DDBJ%2C Best hit);ORF_evidence=Q01MM8 (UniProt);NIAS_FLcDNA=J023111H13;TENOR=Os09t0290900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	6673037	6673349	.	+	.	Parent=Os09t0290900-01
Chr09	irgsp1_rep	five_prime_UTR	6673465	6673927	.	+	.	Parent=Os09t0290900-01
Chr09	irgsp1_rep	CDS	6673928	6673954	.	+	0	Parent=Os09t0290900-01
Chr09	irgsp1_rep	CDS	6674922	6675248	.	+	0	Parent=Os09t0290900-01
Chr09	irgsp1_rep	three_prime_UTR	6675249	6676434	.	+	.	Parent=Os09t0290900-01
Chr09	irgsp1_rep	three_prime_UTR	6676524	6676626	.	+	.	Parent=Os09t0290900-01
Chr09	irgsp1_rep	three_prime_UTR	6678535	6678975	.	+	.	Parent=Os09t0290900-01
Chr09	irgsp1_rep	mRNA	6803261	6806757	.	+	.	ID=Os09t0292300-00;Name=Os09t0292300-00;Locus_id=Os09g0292300;Note=Myb/SANT-like domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q948B6 (UniProt);InterPro=Myb/SANT-like domain (IPR024752);TENOR=Os09t0292300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	6803261	6803294	.	+	0	Parent=Os09t0292300-00
Chr09	irgsp1_rep	CDS	6804280	6804376	.	+	2	Parent=Os09t0292300-00
Chr09	irgsp1_rep	CDS	6804888	6805281	.	+	1	Parent=Os09t0292300-00
Chr09	irgsp1_rep	CDS	6805466	6805739	.	+	0	Parent=Os09t0292300-00
Chr09	irgsp1_rep	CDS	6806272	6806385	.	+	2	Parent=Os09t0292300-00
Chr09	irgsp1_rep	CDS	6806465	6806757	.	+	2	Parent=Os09t0292300-00
Chr09	irgsp1_rep	mRNA	6805465	6810554	.	-	.	ID=Os09t0292350-00;Name=Os09t0292350-00;Locus_id=Os09g0292350;Note=Hypothetical protein.;Transcript_evidence=tplb0043a14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0292350-00
Chr09	irgsp1_rep	five_prime_UTR	6810459	6810554	.	-	.	Parent=Os09t0292350-00
Chr09	irgsp1_rep	CDS	6810414	6810458	.	-	0	Parent=Os09t0292350-00
Chr09	irgsp1_rep	CDS	6810070	6810354	.	-	0	Parent=Os09t0292350-00
Chr09	irgsp1_rep	three_prime_UTR	6810031	6810069	.	-	.	Parent=Os09t0292350-00
Chr09	irgsp1_rep	three_prime_UTR	6806852	6806943	.	-	.	Parent=Os09t0292350-00
Chr09	irgsp1_rep	three_prime_UTR	6806329	6806770	.	-	.	Parent=Os09t0292350-00
Chr09	irgsp1_rep	three_prime_UTR	6805465	6806152	.	-	.	Parent=Os09t0292350-00
Chr09	irgsp1_rep	mRNA	6810220	6810609	.	+	.	ID=Os09t0292400-00;Name=Os09t0292400-00;Locus_id=Os09g0292400;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q69J12 (UniProt);TENOR=Os09t0292400-00
Chr09	irgsp1_rep	CDS	6810220	6810609	.	+	0	Parent=Os09t0292400-00
Chr09	irgsp1_rep	mRNA	6873236	6874612	.	+	.	ID=Os09t0292900-01;Name=Os09t0292900-01;Locus_id=Os09g0292900;Oryzabase Gene Symbol Synonym(s)=IBF1%2C OsFBX310%2C FBX310;Oryzabase Gene Name Synonym(s)=inhibitor for brown furrows1%2C F-box protein 310;Note=Galactose oxidase%2C central domain containing protein.;Transcript_evidence=AK070984 (DDBJ%2C Best hit);ORF_evidence=A2WZL5 (UniProt);InterPro=Galactose oxidase%2C beta-propeller (IPR015916);NIAS_FLcDNA=J023078A07;Oryzabase=11561;Expression=AK070984;TENOR=Os09t0292900-01;KEGG=Os09t0292900-01
Chr09	irgsp1_rep	five_prime_UTR	6873236	6873273	.	+	.	Parent=Os09t0292900-01
Chr09	irgsp1_rep	CDS	6873274	6874458	.	+	0	Parent=Os09t0292900-01
Chr09	irgsp1_rep	three_prime_UTR	6874459	6874612	.	+	.	Parent=Os09t0292900-01
Chr09	irgsp1_rep	mRNA	6947883	6950902	.	+	.	ID=Os09t0293400-01;Name=Os09t0293400-01;Locus_id=Os09g0293400;CGSNL Gene Symbol=UBC18;CGSNL Gene Name=UBIQUITIN-CONJUGATING ENZYME 18;Oryzabase Gene Symbol Synonym(s)=OsUBC18;Oryzabase Gene Name Synonym(s)=Ubiquitin-conjugating enzyme 18;Note=Similar to Ubiquitin-conjugating enzyme (EC 6.3.2.19) (Ubiquitin carrier protein).;Transcript_evidence=AK065902 (DDBJ%2C Best hit),AK059627 (DDBJ%2C Best hit);ORF_evidence=B8BDZ9 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135),Ubiquitin-conjugating enzyme%2C active site (IPR023313);NIAS_FLcDNA=J013047C20,001-030-H11;Oryzabase=19562;Expression=AK065902;TENOR=Os09t0293400-01;KEGG=Os09t0293400-01 (EC:6.3.2.19)
Chr09	irgsp1_rep	five_prime_UTR	6947883	6948041	.	+	.	Parent=Os09t0293400-01
Chr09	irgsp1_rep	five_prime_UTR	6949085	6949086	.	+	.	Parent=Os09t0293400-01
Chr09	irgsp1_rep	CDS	6949087	6949302	.	+	0	Parent=Os09t0293400-01
Chr09	irgsp1_rep	CDS	6950385	6950615	.	+	0	Parent=Os09t0293400-01
Chr09	irgsp1_rep	three_prime_UTR	6950616	6950902	.	+	.	Parent=Os09t0293400-01
Chr09	irgsp1_rep	mRNA	6949087	6950619	.	-	.	ID=Os09t0293450-00;Name=Os09t0293450-00;Locus_id=Os09g0293450;Note=Non-protein coding transcript.;Transcript_evidence=BT086907 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0293450-00
Chr09	irgsp1_rep	exon	6950374	6950619	.	-	.	Parent=Os09t0293450-00
Chr09	irgsp1_rep	exon	6949087	6949289	.	-	.	Parent=Os09t0293450-00
Chr09	irgsp1_rep	mRNA	6954967	6959667	.	-	.	ID=Os09t0293500-01;Name=Os09t0293500-01;Locus_id=Os09g0293500;RAP-DB Gene Symbol Synonym(s)=BRL1%2C OsBRL1;RAP-DB Gene Name Synonym(s)=BRI1 LIKE 1%2C BRI1-like receptor kinase 1;CGSNL Gene Symbol=BRL1;CGSNL Gene Name=BRI1 LIKE  1;Oryzabase Gene Symbol Synonym(s)=OsBRL1;Oryzabase Gene Name Synonym(s)=BRI1-like receptor kinase 1;Note=BR receptor kinase%2C Brassinosteroid (BR) perception in the root;Transcript_evidence=AK243262;ORF_evidence=Q69JN6;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Concanavalin A-like lectin/glucanase domain (IPR013320),Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine/threonine/dual specificity protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat (IPR001611),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J100049C05;Manual Curation=November 16%2C 2009;Literature_PMID=16407447;Oryzabase=7386;TENOR=Os09t0293500-01;KEGG=Os09t0293500-01
Chr09	irgsp1_rep	five_prime_UTR	6959477	6959667	.	-	.	Parent=Os09t0293500-01
Chr09	irgsp1_rep	five_prime_UTR	6958912	6959059	.	-	.	Parent=Os09t0293500-01
Chr09	irgsp1_rep	CDS	6955267	6958911	.	-	0	Parent=Os09t0293500-01
Chr09	irgsp1_rep	three_prime_UTR	6954967	6955266	.	-	.	Parent=Os09t0293500-01
Chr09	irgsp1_rep	mRNA	6973353	6974004	.	+	.	ID=Os09t0293601-01;Name=Os09t0293601-01;Locus_id=Os09g0293601;Note=Conserved hypothetical protein.;Transcript_evidence=AK242421 (DDBJ%2C Best hit);ORF_evidence=Q5JJR4 (UniProt);NIAS_FLcDNA=J080083O13;TENOR=Os09t0293601-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	6973353	6973810	.	+	.	Parent=Os09t0293601-01
Chr09	irgsp1_rep	CDS	6973811	6973954	.	+	0	Parent=Os09t0293601-01
Chr09	irgsp1_rep	three_prime_UTR	6973955	6974004	.	+	.	Parent=Os09t0293601-01
Chr09	irgsp1_rep	mRNA	6990927	6994473	.	+	.	ID=Os09t0293900-01;Name=Os09t0293900-01;Locus_id=Os09g0293900;Oryzabase Gene Symbol Synonym(s)=OsFKBP53%2C OsFKBP53b;Oryzabase Gene Name Synonym(s)=FK506 binding protein 53%2C FK506 binding protein 53b;Note=Similar to FK506-binding protein 39 kDa.;Transcript_evidence=AK287782 (DDBJ%2C Best hit);ORF_evidence=B6SH56 (UniProt);GO=Biological Process: protein folding (GO:0006457);InterPro=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type%2C domain (IPR001179),Peptidyl-prolyl cis-trans isomerase%2C FKBP-type (IPR023566);NIAS_FLcDNA=J065171K17;Oryzabase=10043;TENOR=Os09t0293900-01;KEGG=Os09t0293900-01
Chr09	irgsp1_rep	five_prime_UTR	6990927	6991054	.	+	.	Parent=Os09t0293900-01
Chr09	irgsp1_rep	CDS	6991055	6991067	.	+	0	Parent=Os09t0293900-01
Chr09	irgsp1_rep	CDS	6991153	6991226	.	+	2	Parent=Os09t0293900-01
Chr09	irgsp1_rep	CDS	6991633	6991868	.	+	0	Parent=Os09t0293900-01
Chr09	irgsp1_rep	CDS	6991965	6992146	.	+	1	Parent=Os09t0293900-01
Chr09	irgsp1_rep	CDS	6992740	6993040	.	+	2	Parent=Os09t0293900-01
Chr09	irgsp1_rep	CDS	6993140	6993338	.	+	1	Parent=Os09t0293900-01
Chr09	irgsp1_rep	CDS	6993581	6993665	.	+	0	Parent=Os09t0293900-01
Chr09	irgsp1_rep	CDS	6993742	6993783	.	+	2	Parent=Os09t0293900-01
Chr09	irgsp1_rep	CDS	6993864	6993912	.	+	2	Parent=Os09t0293900-01
Chr09	irgsp1_rep	CDS	6994060	6994153	.	+	1	Parent=Os09t0293900-01
Chr09	irgsp1_rep	three_prime_UTR	6994154	6994473	.	+	.	Parent=Os09t0293900-01
Chr09	irgsp1_rep	mRNA	6995055	7009477	.	-	.	ID=Os09t0294000-01;Name=Os09t0294000-01;Locus_id=Os09g0294000;Note=Similar to Bifunctional aspartokinase/homoserine dehydrogenase 2%2C chloroplast precursor (AK-HD 2) (AK-HSDH 2) [Includes: Aspartokinase (EC 2.7.2.4)%3B Homoserine dehydrogenase (EC 1.1.1.3)].;Transcript_evidence=AK068391 (DDBJ%2C Best hit);ORF_evidence=P93402 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: metabolic process (GO:0008152),Biological Process: cellular amino acid biosynthetic process (GO:0008652),Biological Process: aspartate family amino acid biosynthetic process (GO:0009067),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aspartate kinase activity (GO:0004072),Molecular Function: homoserine dehydrogenase activity (GO:0004412),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: amino acid binding (GO:0016597),Molecular Function: NADP binding (GO:0050661);InterPro=Aspartate/glutamate/uridylate kinase (IPR001048),Aspartate kinase domain (IPR001341),Homoserine dehydrogenase%2C catalytic (IPR001342),Amino acid-binding ACT (IPR002912),Aspartate/homoserine dehydrogenase%2C NAD-binding (IPR005106),Bifunctional aspartokinase/homoserine dehydrogenase I (IPR011147),NAD(P)-binding domain (IPR016040),Aspartate kinase%2C conserved site (IPR018042),Homoserine dehydrogenase%2C conserved site (IPR019811);NIAS_FLcDNA=J013146N15;Expression=AK068391;TENOR=Os09t0294000-01;KEGG=Os09t0294000-01 (EC:1.1.1.3%2C EC:2.7.2.4)
Chr09	irgsp1_rep	five_prime_UTR	7009394	7009477	.	-	.	Parent=Os09t0294000-01
Chr09	irgsp1_rep	CDS	7009314	7009393	.	-	0	Parent=Os09t0294000-01
Chr09	irgsp1_rep	CDS	7008312	7008377	.	-	1	Parent=Os09t0294000-01
Chr09	irgsp1_rep	CDS	7007853	7007914	.	-	1	Parent=Os09t0294000-01
Chr09	irgsp1_rep	CDS	7006863	7007240	.	-	2	Parent=Os09t0294000-01
Chr09	irgsp1_rep	CDS	7006383	7006471	.	-	2	Parent=Os09t0294000-01
Chr09	irgsp1_rep	CDS	7005262	7005565	.	-	0	Parent=Os09t0294000-01
Chr09	irgsp1_rep	CDS	7005038	7005090	.	-	2	Parent=Os09t0294000-01
Chr09	irgsp1_rep	CDS	7004541	7004746	.	-	0	Parent=Os09t0294000-01
Chr09	irgsp1_rep	CDS	7004137	7004224	.	-	1	Parent=Os09t0294000-01
Chr09	irgsp1_rep	CDS	7003950	7004063	.	-	0	Parent=Os09t0294000-01
Chr09	irgsp1_rep	CDS	7003464	7003562	.	-	0	Parent=Os09t0294000-01
Chr09	irgsp1_rep	CDS	7003192	7003386	.	-	0	Parent=Os09t0294000-01
Chr09	irgsp1_rep	CDS	7002783	7002865	.	-	0	Parent=Os09t0294000-01
Chr09	irgsp1_rep	CDS	7002014	7002239	.	-	1	Parent=Os09t0294000-01
Chr09	irgsp1_rep	CDS	7001498	7001643	.	-	0	Parent=Os09t0294000-01
Chr09	irgsp1_rep	CDS	7001199	7001334	.	-	1	Parent=Os09t0294000-01
Chr09	irgsp1_rep	CDS	6995989	6996072	.	-	0	Parent=Os09t0294000-01
Chr09	irgsp1_rep	CDS	6995818	6995910	.	-	0	Parent=Os09t0294000-01
Chr09	irgsp1_rep	CDS	6995342	6995587	.	-	0	Parent=Os09t0294000-01
Chr09	irgsp1_rep	three_prime_UTR	6995055	6995341	.	-	.	Parent=Os09t0294000-01
Chr09	irgsp1_rep	mRNA	6995066	7005542	.	-	.	ID=Os09t0294000-02;Name=Os09t0294000-02;Locus_id=Os09g0294000;Note=Similar to Aspartate kinase-homoserine dehydrogenase.;Transcript_evidence=AK066685 (DDBJ%2C Best hit);ORF_evidence=P93402 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: metabolic process (GO:0008152),Biological Process: cellular amino acid biosynthetic process (GO:0008652),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aspartate kinase activity (GO:0004072),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: amino acid binding (GO:0016597),Molecular Function: NADP binding (GO:0050661);InterPro=Aspartate/glutamate/uridylate kinase (IPR001048),Aspartate kinase domain (IPR001341),Homoserine dehydrogenase%2C catalytic (IPR001342),Amino acid-binding ACT (IPR002912),Aspartate/homoserine dehydrogenase%2C NAD-binding (IPR005106),NAD(P)-binding domain (IPR016040),Homoserine dehydrogenase%2C conserved site (IPR019811);NIAS_FLcDNA=J013071M24;Expression=AK066685;TENOR=Os09t0294000-02;KEGG=Os09t0294000-02 (EC:1.1.1.3%2C EC:2.7.2.4)
Chr09	irgsp1_rep	five_prime_UTR	7005542	7005542	.	-	.	Parent=Os09t0294000-02
Chr09	irgsp1_rep	CDS	7005262	7005541	.	-	0	Parent=Os09t0294000-02
Chr09	irgsp1_rep	CDS	7005038	7005090	.	-	2	Parent=Os09t0294000-02
Chr09	irgsp1_rep	CDS	7004541	7004746	.	-	0	Parent=Os09t0294000-02
Chr09	irgsp1_rep	CDS	7004137	7004224	.	-	1	Parent=Os09t0294000-02
Chr09	irgsp1_rep	CDS	7003950	7004063	.	-	0	Parent=Os09t0294000-02
Chr09	irgsp1_rep	CDS	7003464	7003562	.	-	0	Parent=Os09t0294000-02
Chr09	irgsp1_rep	CDS	7003192	7003386	.	-	0	Parent=Os09t0294000-02
Chr09	irgsp1_rep	CDS	7002783	7002865	.	-	0	Parent=Os09t0294000-02
Chr09	irgsp1_rep	CDS	7002014	7002239	.	-	1	Parent=Os09t0294000-02
Chr09	irgsp1_rep	CDS	7001498	7001643	.	-	0	Parent=Os09t0294000-02
Chr09	irgsp1_rep	CDS	7001199	7001334	.	-	1	Parent=Os09t0294000-02
Chr09	irgsp1_rep	CDS	6995989	6996072	.	-	0	Parent=Os09t0294000-02
Chr09	irgsp1_rep	CDS	6995818	6995910	.	-	0	Parent=Os09t0294000-02
Chr09	irgsp1_rep	CDS	6995342	6995587	.	-	0	Parent=Os09t0294000-02
Chr09	irgsp1_rep	three_prime_UTR	6995066	6995341	.	-	.	Parent=Os09t0294000-02
Chr09	irgsp1_rep	mRNA	7017626	7020961	.	-	.	ID=Os09t0294300-01;Name=Os09t0294300-01;Locus_id=Os09g0294300;CGSNL Gene Symbol=UBC40;CGSNL Gene Name=UBIQUITIN-CONJUGATING ENZYME 40;Oryzabase Gene Symbol Synonym(s)=OsUBC40;Oryzabase Gene Name Synonym(s)=Ubiquitin-conjugating enzyme 40;Note=Ubiquitin-conjugating enzyme/RWD-like domain containing protein.;Transcript_evidence=AK107258 (DDBJ%2C Best hit);ORF_evidence=B8BE02 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135);NIAS_FLcDNA=002-125-G10;Oryzabase=19573;Expression=AK107258;TENOR=Os09t0294300-01;KEGG=Os09t0294300-01
Chr09	irgsp1_rep	five_prime_UTR	7020881	7020961	.	-	.	Parent=Os09t0294300-01
Chr09	irgsp1_rep	CDS	7020852	7020880	.	-	0	Parent=Os09t0294300-01
Chr09	irgsp1_rep	CDS	7020609	7020705	.	-	1	Parent=Os09t0294300-01
Chr09	irgsp1_rep	CDS	7019768	7019902	.	-	0	Parent=Os09t0294300-01
Chr09	irgsp1_rep	CDS	7019451	7019681	.	-	0	Parent=Os09t0294300-01
Chr09	irgsp1_rep	CDS	7019312	7019375	.	-	0	Parent=Os09t0294300-01
Chr09	irgsp1_rep	CDS	7018881	7019020	.	-	2	Parent=Os09t0294300-01
Chr09	irgsp1_rep	CDS	7018467	7018778	.	-	0	Parent=Os09t0294300-01
Chr09	irgsp1_rep	CDS	7017861	7018154	.	-	0	Parent=Os09t0294300-01
Chr09	irgsp1_rep	three_prime_UTR	7017626	7017860	.	-	.	Parent=Os09t0294300-01
Chr09	irgsp1_rep	mRNA	7038132	7038397	.	+	.	ID=Os09t0294550-00;Name=Os09t0294550-00;Locus_id=Os09g0294550;Note=Conserved hypothetical protein.;Transcript_evidence=AF031482 (DDBJ);ORF_evidence=Q33AZ2 (UniProt);TENOR=Os09t0294550-00
Chr09	irgsp1_rep	five_prime_UTR	7038132	7038240	.	+	.	Parent=Os09t0294550-00
Chr09	irgsp1_rep	CDS	7038241	7038369	.	+	0	Parent=Os09t0294550-00
Chr09	irgsp1_rep	three_prime_UTR	7038370	7038397	.	+	.	Parent=Os09t0294550-00
Chr09	irgsp1_rep	mRNA	7077214	7078851	.	-	.	ID=Os09t0295000-01;Name=Os09t0295000-01;Locus_id=Os09g0295000;CGSNL Gene Symbol=NAC21;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 21;Oryzabase Gene Symbol Synonym(s)=ONAC021%2C ONAC21%2C DLN220%2C OsDLN220;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 021%2C NAC domain-containing protein 21%2C DLN repressor 220%2C DLN motif protein 220;Note=No apical meristem (NAM) protein domain containing protein.;Transcript_evidence=AK106741 (DDBJ%2C Best hit);ORF_evidence=NP_001147684.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=002-115-B04;Oryzabase=11469;Expression=AK106741;TENOR=Os09t0295000-01;KEGG=Os09t0295000-01
Chr09	irgsp1_rep	five_prime_UTR	7078810	7078851	.	-	.	Parent=Os09t0295000-01
Chr09	irgsp1_rep	CDS	7077322	7078809	.	-	0	Parent=Os09t0295000-01
Chr09	irgsp1_rep	three_prime_UTR	7077214	7077321	.	-	.	Parent=Os09t0295000-01
Chr09	irgsp1_rep	mRNA	7083652	7086647	.	+	.	ID=Os09t0295200-01;Name=Os09t0295200-01;Locus_id=Os09g0295200;Note=Conserved hypothetical protein.;Transcript_evidence=AK073072 (DDBJ%2C Best hit);ORF_evidence=NP_001172950.1 (RefSeq);NIAS_FLcDNA=J033005L15;TENOR=Os09t0295200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	7083652	7083652	.	+	.	Parent=Os09t0295200-01
Chr09	irgsp1_rep	CDS	7083653	7083940	.	+	0	Parent=Os09t0295200-01
Chr09	irgsp1_rep	three_prime_UTR	7083941	7086647	.	+	.	Parent=Os09t0295200-01
Chr09	irgsp1_rep	mRNA	7087266	7087829	.	-	.	ID=Os09t0295300-00;Name=Os09t0295300-00;Locus_id=Os09g0295300;Note=Similar to cDNA clone:002-138-B03%2C full insert sequence.;Transcript_evidence=CT837704 (DDBJ%2C Best hit);ORF_evidence=B7F0X0 (UniProt);TENOR=Os09t0295300-00;KEGG=Os09t0295300-00
Chr09	irgsp1_rep	five_prime_UTR	7087801	7087829	.	-	.	Parent=Os09t0295300-00
Chr09	irgsp1_rep	CDS	7087393	7087800	.	-	0	Parent=Os09t0295300-00
Chr09	irgsp1_rep	three_prime_UTR	7087266	7087392	.	-	.	Parent=Os09t0295300-00
Chr09	irgsp1_rep	mRNA	7162835	7163860	.	+	.	ID=Os09t0295850-00;Name=Os09t0295850-00;Locus_id=Os09g0295850;Note=Conserved hypothetical protein.;Transcript_evidence=DQ115063 (DDBJ);ORF_evidence=XP_002450498.1 (RefSeq);TENOR=Os09t0295850-00
Chr09	irgsp1_rep	CDS	7162835	7163086	.	+	0	Parent=Os09t0295850-00
Chr09	irgsp1_rep	three_prime_UTR	7163087	7163860	.	+	.	Parent=Os09t0295850-00
Chr09	irgsp1_rep	mRNA	7166573	7171386	.	+	.	ID=Os09t0296400-01;Name=Os09t0296400-01;Locus_id=Os09g0296400;Note=Similar to predicted protein.;Transcript_evidence=AK242919 (DDBJ%2C Best hit);ORF_evidence=XP_002879321.1 (RefSeq);NIAS_FLcDNA=J090084M08;TENOR=Os09t0296400-01;KEGG=Os09t0296400-01
Chr09	irgsp1_rep	five_prime_UTR	7166573	7166643	.	+	.	Parent=Os09t0296400-01
Chr09	irgsp1_rep	CDS	7166644	7167432	.	+	0	Parent=Os09t0296400-01
Chr09	irgsp1_rep	CDS	7167516	7167676	.	+	0	Parent=Os09t0296400-01
Chr09	irgsp1_rep	CDS	7168711	7168771	.	+	1	Parent=Os09t0296400-01
Chr09	irgsp1_rep	CDS	7168853	7168918	.	+	0	Parent=Os09t0296400-01
Chr09	irgsp1_rep	CDS	7169050	7169135	.	+	0	Parent=Os09t0296400-01
Chr09	irgsp1_rep	CDS	7169587	7169644	.	+	1	Parent=Os09t0296400-01
Chr09	irgsp1_rep	CDS	7169819	7170031	.	+	0	Parent=Os09t0296400-01
Chr09	irgsp1_rep	CDS	7170247	7170312	.	+	0	Parent=Os09t0296400-01
Chr09	irgsp1_rep	CDS	7170386	7170465	.	+	0	Parent=Os09t0296400-01
Chr09	irgsp1_rep	CDS	7170556	7170670	.	+	1	Parent=Os09t0296400-01
Chr09	irgsp1_rep	three_prime_UTR	7170671	7170672	.	+	.	Parent=Os09t0296400-01
Chr09	irgsp1_rep	three_prime_UTR	7170783	7170870	.	+	.	Parent=Os09t0296400-01
Chr09	irgsp1_rep	three_prime_UTR	7170972	7171386	.	+	.	Parent=Os09t0296400-01
Chr09	irgsp1_rep	mRNA	7166594	7170669	.	-	.	ID=Os09t0296450-00;Name=Os09t0296450-00;Locus_id=Os09g0296450;Note=Hypothetical protein.;Transcript_evidence=tplb0057f07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0296450-00
Chr09	irgsp1_rep	five_prime_UTR	7170576	7170669	.	-	.	Parent=Os09t0296450-00
Chr09	irgsp1_rep	five_prime_UTR	7170368	7170480	.	-	.	Parent=Os09t0296450-00
Chr09	irgsp1_rep	five_prime_UTR	7170245	7170297	.	-	.	Parent=Os09t0296450-00
Chr09	irgsp1_rep	five_prime_UTR	7169813	7170020	.	-	.	Parent=Os09t0296450-00
Chr09	irgsp1_rep	five_prime_UTR	7169586	7169637	.	-	.	Parent=Os09t0296450-00
Chr09	irgsp1_rep	five_prime_UTR	7169048	7169134	.	-	.	Parent=Os09t0296450-00
Chr09	irgsp1_rep	five_prime_UTR	7168855	7168916	.	-	.	Parent=Os09t0296450-00
Chr09	irgsp1_rep	five_prime_UTR	7168710	7168776	.	-	.	Parent=Os09t0296450-00
Chr09	irgsp1_rep	five_prime_UTR	7167600	7167675	.	-	.	Parent=Os09t0296450-00
Chr09	irgsp1_rep	CDS	7167509	7167599	.	-	0	Parent=Os09t0296450-00
Chr09	irgsp1_rep	CDS	7166594	7167425	.	-	2	Parent=Os09t0296450-00
Chr09	irgsp1_rep	mRNA	7172525	7173592	.	+	.	ID=Os09t0296500-01;Name=Os09t0296500-01;Locus_id=Os09g0296500;Note=Conserved hypothetical protein.;Transcript_evidence=AK106991 (DDBJ%2C Best hit);ORF_evidence=Q69TB6 (UniProt);NIAS_FLcDNA=002-120-B01;Expression=AK106991;TENOR=Os09t0296500-01;KEGG=Os09t0296500-01
Chr09	irgsp1_rep	five_prime_UTR	7172525	7172556	.	+	.	Parent=Os09t0296500-01
Chr09	irgsp1_rep	CDS	7172557	7173147	.	+	0	Parent=Os09t0296500-01
Chr09	irgsp1_rep	three_prime_UTR	7173148	7173592	.	+	.	Parent=Os09t0296500-01
Chr09	irgsp1_rep	mRNA	7179985	7181868	.	+	.	ID=Os09t0296700-01;Name=Os09t0296700-01;Locus_id=Os09g0296700;Note=Glycosyl transferase%2C group 1 domain containing protein.;Transcript_evidence=AK070245 (DDBJ%2C Best hit);ORF_evidence=B6T775 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058);InterPro=Glycosyl transferase%2C family 1 (IPR001296);NIAS_FLcDNA=J023044M15;Expression=AK070245;TENOR=Os09t0296700-01;KEGG=Os09t0296700-01
Chr09	irgsp1_rep	five_prime_UTR	7179985	7180122	.	+	.	Parent=Os09t0296700-01
Chr09	irgsp1_rep	CDS	7180123	7181586	.	+	0	Parent=Os09t0296700-01
Chr09	irgsp1_rep	three_prime_UTR	7181587	7181868	.	+	.	Parent=Os09t0296700-01
Chr09	irgsp1_rep	mRNA	7185218	7188139	.	+	.	ID=Os09t0296800-01;Name=Os09t0296800-01;Locus_id=Os09g0296800;Oryzabase Gene Symbol Synonym(s)=CabE;Oryzabase Gene Name Synonym(s)=PSII type l Cab E;Note=Chlorophyll A-B binding protein family protein.;Transcript_evidence=AK066997 (DDBJ%2C Best hit);ORF_evidence=XP_002307004.1 (RefSeq);GO=Biological Process: photosynthesis%2C light harvesting (GO:0009765),Cellular Component: membrane (GO:0016020);InterPro=Chlorophyll A-B binding protein%2C plant (IPR001344),Chlorophyll A-B binding protein (IPR022796),Chlorophyll a/b binding protein domain (IPR023329);NIAS_FLcDNA=J013091K09;Oryzabase=12435;Expression=AK066997;TENOR=Os09t0296800-01;KEGG=Os09t0296800-01
Chr09	irgsp1_rep	five_prime_UTR	7185218	7185218	.	+	.	Parent=Os09t0296800-01
Chr09	irgsp1_rep	CDS	7185219	7185514	.	+	0	Parent=Os09t0296800-01
Chr09	irgsp1_rep	CDS	7185602	7185748	.	+	1	Parent=Os09t0296800-01
Chr09	irgsp1_rep	CDS	7186767	7186899	.	+	1	Parent=Os09t0296800-01
Chr09	irgsp1_rep	CDS	7187303	7187395	.	+	0	Parent=Os09t0296800-01
Chr09	irgsp1_rep	CDS	7187609	7187905	.	+	0	Parent=Os09t0296800-01
Chr09	irgsp1_rep	three_prime_UTR	7187906	7188139	.	+	.	Parent=Os09t0296800-01
Chr09	irgsp1_rep	mRNA	7189541	7196703	.	+	.	ID=Os09t0296900-01;Name=Os09t0296900-01;Locus_id=Os09g0296900;Oryzabase Gene Symbol Synonym(s)=OsWD40-169;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK072913 (DDBJ%2C Best hit);ORF_evidence=Q69TB2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J023149F04;Oryzabase=10850;Expression=AK072913;TENOR=Os09t0296900-01;KEGG=Os09t0296900-01
Chr09	irgsp1_rep	five_prime_UTR	7189541	7189788	.	+	.	Parent=Os09t0296900-01
Chr09	irgsp1_rep	five_prime_UTR	7191191	7191204	.	+	.	Parent=Os09t0296900-01
Chr09	irgsp1_rep	CDS	7191205	7191320	.	+	0	Parent=Os09t0296900-01
Chr09	irgsp1_rep	CDS	7191414	7191563	.	+	1	Parent=Os09t0296900-01
Chr09	irgsp1_rep	CDS	7191683	7191799	.	+	1	Parent=Os09t0296900-01
Chr09	irgsp1_rep	CDS	7191871	7191955	.	+	1	Parent=Os09t0296900-01
Chr09	irgsp1_rep	CDS	7192238	7192346	.	+	0	Parent=Os09t0296900-01
Chr09	irgsp1_rep	CDS	7192440	7192507	.	+	2	Parent=Os09t0296900-01
Chr09	irgsp1_rep	CDS	7192601	7192726	.	+	0	Parent=Os09t0296900-01
Chr09	irgsp1_rep	CDS	7192838	7193925	.	+	0	Parent=Os09t0296900-01
Chr09	irgsp1_rep	CDS	7194214	7194420	.	+	1	Parent=Os09t0296900-01
Chr09	irgsp1_rep	CDS	7194524	7194584	.	+	1	Parent=Os09t0296900-01
Chr09	irgsp1_rep	CDS	7194851	7194964	.	+	0	Parent=Os09t0296900-01
Chr09	irgsp1_rep	CDS	7195381	7195494	.	+	0	Parent=Os09t0296900-01
Chr09	irgsp1_rep	CDS	7195568	7195612	.	+	0	Parent=Os09t0296900-01
Chr09	irgsp1_rep	three_prime_UTR	7195613	7195628	.	+	.	Parent=Os09t0296900-01
Chr09	irgsp1_rep	three_prime_UTR	7196167	7196703	.	+	.	Parent=Os09t0296900-01
Chr09	irgsp1_rep	mRNA	7198635	7204743	.	+	.	ID=Os09t0297000-01;Name=Os09t0297000-01;Locus_id=Os09g0297000;Oryzabase Gene Symbol Synonym(s)=FC1%2C OsGUN6-1%2C GUN6-1;Oryzabase Gene Name Synonym(s)=Ferrochelatase 1%2C Genome uncoupled 6-1;Note=Similar to Ferrochelatase.;Transcript_evidence=AK068174 (DDBJ%2C Best hit);ORF_evidence=B9G2P4 (UniProt);GO=Biological Process: heme biosynthetic process (GO:0006783),Molecular Function: ferrochelatase activity (GO:0004325);InterPro=Ferrochelatase (IPR001015),Ferrochelatase%2C active site (IPR019772);NIAS_FLcDNA=J013129M17;Oryzabase=19974;TENOR=Os09t0297000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	7198635	7198803	.	+	.	Parent=Os09t0297000-01
Chr09	irgsp1_rep	CDS	7198804	7198806	.	+	0	Parent=Os09t0297000-01
Chr09	irgsp1_rep	CDS	7198919	7199013	.	+	0	Parent=Os09t0297000-01
Chr09	irgsp1_rep	CDS	7200694	7201012	.	+	1	Parent=Os09t0297000-01
Chr09	irgsp1_rep	CDS	7201354	7201497	.	+	0	Parent=Os09t0297000-01
Chr09	irgsp1_rep	CDS	7201651	7201752	.	+	0	Parent=Os09t0297000-01
Chr09	irgsp1_rep	CDS	7202056	7202159	.	+	0	Parent=Os09t0297000-01
Chr09	irgsp1_rep	CDS	7202309	7202435	.	+	1	Parent=Os09t0297000-01
Chr09	irgsp1_rep	CDS	7203127	7203279	.	+	0	Parent=Os09t0297000-01
Chr09	irgsp1_rep	CDS	7203514	7203614	.	+	0	Parent=Os09t0297000-01
Chr09	irgsp1_rep	CDS	7204100	7204415	.	+	1	Parent=Os09t0297000-01
Chr09	irgsp1_rep	three_prime_UTR	7204416	7204743	.	+	.	Parent=Os09t0297000-01
Chr09	irgsp1_rep	mRNA	7205188	7208171	.	-	.	ID=Os09t0297100-01;Name=Os09t0297100-01;Locus_id=Os09g0297100;Oryzabase Gene Symbol Synonym(s)=MMS2%2C OsUEV1C%2C UEV1C;Oryzabase Gene Name Synonym(s)=Ubc-E2 variant 1C;Note=Similar to CROC-1-like protein (Fragment).;Transcript_evidence=AK073729 (DDBJ%2C Best hit);ORF_evidence=A6N196 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135);NIAS_FLcDNA=J033054B21;Oryzabase=21297;Expression=AK073729;TENOR=Os09t0297100-01;KEGG=Os09t0297100-01
Chr09	irgsp1_rep	five_prime_UTR	7208089	7208171	.	-	.	Parent=Os09t0297100-01
Chr09	irgsp1_rep	CDS	7208049	7208088	.	-	0	Parent=Os09t0297100-01
Chr09	irgsp1_rep	CDS	7206256	7206395	.	-	2	Parent=Os09t0297100-01
Chr09	irgsp1_rep	CDS	7205720	7205845	.	-	0	Parent=Os09t0297100-01
Chr09	irgsp1_rep	CDS	7205485	7205625	.	-	0	Parent=Os09t0297100-01
Chr09	irgsp1_rep	three_prime_UTR	7205188	7205484	.	-	.	Parent=Os09t0297100-01
Chr09	irgsp1_rep	mRNA	7205157	7208144	.	-	.	ID=Os09t0297100-02;Name=Os09t0297100-02;Locus_id=Os09g0297100;Oryzabase Gene Symbol Synonym(s)=MMS2%2C OsUEV1C%2C UEV1C;Oryzabase Gene Name Synonym(s)=Ubc-E2 variant 1C;Note=Similar to CROC-1-like protein (Fragment).;Transcript_evidence=AK104965 (DDBJ%2C Best hit);ORF_evidence=A6N196 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135);NIAS_FLcDNA=001-121-C07;Oryzabase=21297;Expression=AK104965;TENOR=Os09t0297100-02;KEGG=Os09t0297100-02
Chr09	irgsp1_rep	five_prime_UTR	7208089	7208144	.	-	.	Parent=Os09t0297100-02
Chr09	irgsp1_rep	CDS	7208049	7208088	.	-	0	Parent=Os09t0297100-02
Chr09	irgsp1_rep	CDS	7206256	7206395	.	-	2	Parent=Os09t0297100-02
Chr09	irgsp1_rep	CDS	7205720	7205845	.	-	0	Parent=Os09t0297100-02
Chr09	irgsp1_rep	CDS	7205485	7205625	.	-	0	Parent=Os09t0297100-02
Chr09	irgsp1_rep	three_prime_UTR	7205157	7205484	.	-	.	Parent=Os09t0297100-02
Chr09	irgsp1_rep	mRNA	7218928	7220483	.	-	.	ID=Os09t0297200-00;Name=Os09t0297200-00;Locus_id=Os09g0297200;Note=Hypothetical protein.;Transcript_evidence=tplb0053a05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0297200-00
Chr09	irgsp1_rep	five_prime_UTR	7220416	7220483	.	-	.	Parent=Os09t0297200-00
Chr09	irgsp1_rep	CDS	7219876	7220415	.	-	0	Parent=Os09t0297200-00
Chr09	irgsp1_rep	three_prime_UTR	7218928	7219875	.	-	.	Parent=Os09t0297200-00
Chr09	irgsp1_rep	mRNA	7218944	7220635	.	+	.	ID=Os09t0297300-00;Name=Os09t0297300-00;Locus_id=Os09g0297300;Note=Similar to sugar carrier protein C.;Transcript_evidence=EU972667 (DDBJ);ORF_evidence=NP_001148007.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);TENOR=Os09t0297300-00;KEGG=Os09t0297300-00
Chr09	irgsp1_rep	CDS	7218944	7220515	.	+	0	Parent=Os09t0297300-00
Chr09	irgsp1_rep	three_prime_UTR	7220516	7220635	.	+	.	Parent=Os09t0297300-00
Chr09	irgsp1_rep	mRNA	7222188	7225657	.	-	.	ID=Os09t0297400-01;Name=Os09t0297400-01;Locus_id=Os09g0297400;CGSNL Gene Symbol=PPT1;CGSNL Gene Name=PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR 1;Oryzabase Gene Symbol Synonym(s)=OsPPT1;Note=Similar to Phosphate/phosphoenolpyruvate translocator.;Transcript_evidence=AK071036 (DDBJ%2C Best hit);ORF_evidence=Q69VR7 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215);InterPro=Drug/metabolite transporter (IPR000620),Tpt phosphate/phosphoenolpyruvate translocator (IPR004696),Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=J023080P10;Oryzabase=8715;Expression=AK071036;TENOR=Os09t0297400-01;KEGG=Os09t0297400-01
Chr09	irgsp1_rep	five_prime_UTR	7225546	7225657	.	-	.	Parent=Os09t0297400-01
Chr09	irgsp1_rep	CDS	7225162	7225545	.	-	0	Parent=Os09t0297400-01
Chr09	irgsp1_rep	CDS	7224196	7224318	.	-	0	Parent=Os09t0297400-01
Chr09	irgsp1_rep	CDS	7223950	7224102	.	-	0	Parent=Os09t0297400-01
Chr09	irgsp1_rep	CDS	7223753	7223838	.	-	0	Parent=Os09t0297400-01
Chr09	irgsp1_rep	CDS	7223544	7223628	.	-	1	Parent=Os09t0297400-01
Chr09	irgsp1_rep	CDS	7223135	7223254	.	-	0	Parent=Os09t0297400-01
Chr09	irgsp1_rep	CDS	7222981	7223049	.	-	0	Parent=Os09t0297400-01
Chr09	irgsp1_rep	CDS	7222680	7222809	.	-	0	Parent=Os09t0297400-01
Chr09	irgsp1_rep	CDS	7222520	7222596	.	-	2	Parent=Os09t0297400-01
Chr09	irgsp1_rep	three_prime_UTR	7222188	7222519	.	-	.	Parent=Os09t0297400-01
Chr09	irgsp1_rep	mRNA	7231651	7232571	.	-	.	ID=Os09t0297800-01;Name=Os09t0297800-01;Locus_id=Os09g0297800;Note=Similar to GPI-anchored protein.;Transcript_evidence=AK064738 (DDBJ%2C Best hit);ORF_evidence=A2PZD8 (UniProt);NIAS_FLcDNA=002-120-C12;Expression=AK064738;TENOR=Os09t0297800-01;KEGG=Os09t0297800-01
Chr09	irgsp1_rep	five_prime_UTR	7232488	7232571	.	-	.	Parent=Os09t0297800-01
Chr09	irgsp1_rep	CDS	7232406	7232487	.	-	0	Parent=Os09t0297800-01
Chr09	irgsp1_rep	CDS	7231890	7232332	.	-	2	Parent=Os09t0297800-01
Chr09	irgsp1_rep	three_prime_UTR	7231651	7231889	.	-	.	Parent=Os09t0297800-01
Chr09	irgsp1_rep	mRNA	7233384	7234196	.	-	.	ID=Os09t0297900-01;Name=Os09t0297900-01;Locus_id=Os09g0297900;Note=Conserved hypothetical protein.;Transcript_evidence=AK107955 (DDBJ%2C Best hit);ORF_evidence=A2YZJ7 (UniProt);NIAS_FLcDNA=002-135-C03;TENOR=Os09t0297900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	7234195	7234196	.	-	.	Parent=Os09t0297900-01
Chr09	irgsp1_rep	CDS	7233520	7234194	.	-	0	Parent=Os09t0297900-01
Chr09	irgsp1_rep	three_prime_UTR	7233384	7233519	.	-	.	Parent=Os09t0297900-01
Chr09	irgsp1_rep	mRNA	7240336	7244713	.	+	.	ID=Os09t0298100-00;Name=Os09t0298100-00;Locus_id=Os09g0298100;CGSNL Gene Symbol=PFPA4;CGSNL Gene Name=PYROPHOSPHATE-FRUCTOSE-6-PHOSPHATEPHOSPHOTRANSFERASE ALPHA SUBUNIT 4;Oryzabase Gene Symbol Synonym(s)=OsPFPA4%2C OsPFP1a4%2C PFP1a4;Oryzabase Gene Name Synonym(s)=pyrophosphate-fructose-6-phosphatephosphotransferase  alpha subunit 4%2C PFP-alpha subunit 4%2C catalytic a-subunit 4 of PFP1;Note=Similar to predicted protein.;Transcript_evidence=AK363676 (DDBJ);ORF_evidence=A9YVC8 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Cellular Component: 6-phosphofructokinase complex (GO:0005945),Molecular Function: 6-phosphofructokinase activity (GO:0003872),Molecular Function: ATP binding (GO:0005524),Molecular Function: diphosphate-fructose-6-phosphate 1-phosphotransferase activity (GO:0047334);InterPro=Phosphofructokinase domain (IPR000023),Pyrophosphate-dependent phosphofructokinase PfpB (IPR011183),Pyrophosphate-dependent phosphofructokinase%2C alpha-helical (IPR013981);Oryzabase=19620;TENOR=Os09t0298100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	7240336	7240431	.	+	0	Parent=Os09t0298100-00
Chr09	irgsp1_rep	CDS	7240594	7240760	.	+	0	Parent=Os09t0298100-00
Chr09	irgsp1_rep	CDS	7240954	7241066	.	+	1	Parent=Os09t0298100-00
Chr09	irgsp1_rep	CDS	7241247	7241321	.	+	2	Parent=Os09t0298100-00
Chr09	irgsp1_rep	CDS	7241403	7241516	.	+	2	Parent=Os09t0298100-00
Chr09	irgsp1_rep	CDS	7241733	7241800	.	+	2	Parent=Os09t0298100-00
Chr09	irgsp1_rep	CDS	7241878	7241961	.	+	0	Parent=Os09t0298100-00
Chr09	irgsp1_rep	CDS	7242154	7242207	.	+	0	Parent=Os09t0298100-00
Chr09	irgsp1_rep	CDS	7242292	7242372	.	+	0	Parent=Os09t0298100-00
Chr09	irgsp1_rep	CDS	7242467	7242560	.	+	0	Parent=Os09t0298100-00
Chr09	irgsp1_rep	CDS	7242689	7242762	.	+	2	Parent=Os09t0298100-00
Chr09	irgsp1_rep	CDS	7242844	7242954	.	+	0	Parent=Os09t0298100-00
Chr09	irgsp1_rep	CDS	7243036	7243080	.	+	0	Parent=Os09t0298100-00
Chr09	irgsp1_rep	CDS	7243164	7243220	.	+	0	Parent=Os09t0298100-00
Chr09	irgsp1_rep	CDS	7243307	7243411	.	+	0	Parent=Os09t0298100-00
Chr09	irgsp1_rep	CDS	7243560	7243676	.	+	0	Parent=Os09t0298100-00
Chr09	irgsp1_rep	CDS	7243772	7243875	.	+	0	Parent=Os09t0298100-00
Chr09	irgsp1_rep	CDS	7244209	7244374	.	+	1	Parent=Os09t0298100-00
Chr09	irgsp1_rep	CDS	7244467	7244604	.	+	0	Parent=Os09t0298100-00
Chr09	irgsp1_rep	three_prime_UTR	7244605	7244713	.	+	.	Parent=Os09t0298100-00
Chr09	irgsp1_rep	mRNA	7245434	7249813	.	-	.	ID=Os09t0298200-01;Name=Os09t0298200-01;Locus_id=Os09g0298200;RAP-DB Gene Symbol Synonym(s)=OsAGPS1;RAP-DB Gene Name Synonym(s)=ADP-glucose pyrophosphorylase small subunit 1;CGSNL Gene Symbol=AGPS1;CGSNL Gene Name=ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1;Oryzabase Gene Symbol Synonym(s)=OsAGPS1%2C APS1%2C OsAPS1%2C AGPsma;Oryzabase Gene Name Synonym(s)=sativa ADP-glucose pyrophosphorylase small subunit 1%2C ADP-glucose Pyrophosphorylase small subunit 1%2C AGPase small subunit 1%2C Adenosine diphosphate glucose pyrophosphorylase%2C adenosine diphosphoglucose pyrophosphorylase%2C ADP-glucose pyrophosphorylase small unit 1%2C AGPase S1;Note=Chloroplastic/amyloplastic ADP-glucose pyrophosphorylase small subunit 1%2C Starch synthesis in the early stage of developing endosperm;Transcript_evidence=AK073146;ORF_evidence=Q69T99;GO=Biological Process: glycogen biosynthetic process (GO:0005978),Biological Process: biosynthetic process (GO:0009058),Molecular Function: glucose-1-phosphate adenylyltransferase activity (GO:0008878),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=Nucleotide-diphospho-sugar transferases (IPR029044),Trimeric LpxA-like superfamily (IPR011004),Glucose-1-phosphate adenylyltransferase (IPR011831),Nucleotidyl transferase domain (IPR005835),ADP-glucose pyrophosphorylase%2C conserved site (IPR005836);NIAS_FLcDNA=J033022L06;Manual Curation=July 16%2C 2019;Literature_PMID=17406793;Oryzabase=8255;Expression=AK073146;TENOR=Os09t0298200-01;KEGG=Os09t0298200-01 (EC:2.7.7.27);Subcellular location=amyloplast (GO:0009501), chloroplast (GO:0009507)
Chr09	irgsp1_rep	five_prime_UTR	7249675	7249813	.	-	.	Parent=Os09t0298200-01
Chr09	irgsp1_rep	CDS	7249471	7249674	.	-	0	Parent=Os09t0298200-01
Chr09	irgsp1_rep	CDS	7248552	7248848	.	-	0	Parent=Os09t0298200-01
Chr09	irgsp1_rep	CDS	7247799	7248068	.	-	0	Parent=Os09t0298200-01
Chr09	irgsp1_rep	CDS	7247529	7247708	.	-	0	Parent=Os09t0298200-01
Chr09	irgsp1_rep	CDS	7247246	7247349	.	-	0	Parent=Os09t0298200-01
Chr09	irgsp1_rep	CDS	7247034	7247145	.	-	1	Parent=Os09t0298200-01
Chr09	irgsp1_rep	CDS	7246756	7246854	.	-	0	Parent=Os09t0298200-01
Chr09	irgsp1_rep	CDS	7246563	7246682	.	-	0	Parent=Os09t0298200-01
Chr09	irgsp1_rep	CDS	7245951	7246067	.	-	0	Parent=Os09t0298200-01
Chr09	irgsp1_rep	three_prime_UTR	7245924	7245950	.	-	.	Parent=Os09t0298200-01
Chr09	irgsp1_rep	three_prime_UTR	7245434	7245715	.	-	.	Parent=Os09t0298200-01
Chr09	irgsp1_rep	mRNA	7245593	7249770	.	-	.	ID=Os09t0298200-02;Name=Os09t0298200-02;Locus_id=Os09g0298200;CGSNL Gene Symbol=AGPS1;CGSNL Gene Name=ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1;Oryzabase Gene Symbol Synonym(s)=OsAGPS1%2C APS1%2C OsAPS1%2C AGPsma;Oryzabase Gene Name Synonym(s)=sativa ADP-glucose pyrophosphorylase small subunit 1%2C ADP-glucose Pyrophosphorylase small subunit 1%2C AGPase small subunit 1%2C Adenosine diphosphate glucose pyrophosphorylase%2C adenosine diphosphoglucose pyrophosphorylase%2C ADP-glucose pyrophosphorylase small unit 1%2C AGPase S1;Note=Similar to Brittle 2.;Transcript_evidence=AK060270 (DDBJ%2C Best hit);ORF_evidence=D3U2H7 (UniProt);GO=Biological Process: glycogen biosynthetic process (GO:0005978),Biological Process: biosynthetic process (GO:0009058),Molecular Function: glucose-1-phosphate adenylyltransferase activity (GO:0008878),Molecular Function: transferase activity (GO:0016740),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=Nucleotidyl transferase (IPR005835),ADP-glucose pyrophosphorylase%2C conserved site (IPR005836),Trimeric LpxA-like (IPR011004),Glucose-1-phosphate adenylyltransferase (IPR011831);NIAS_FLcDNA=001-005-E09;Oryzabase=8255;Expression=AK060270;TENOR=Os09t0298200-02;KEGG=Os09t0298200-02 (EC:2.7.7.27)
Chr09	irgsp1_rep	five_prime_UTR	7249675	7249770	.	-	.	Parent=Os09t0298200-02
Chr09	irgsp1_rep	CDS	7249471	7249674	.	-	0	Parent=Os09t0298200-02
Chr09	irgsp1_rep	CDS	7248552	7248848	.	-	0	Parent=Os09t0298200-02
Chr09	irgsp1_rep	CDS	7247799	7248068	.	-	0	Parent=Os09t0298200-02
Chr09	irgsp1_rep	CDS	7247529	7247708	.	-	0	Parent=Os09t0298200-02
Chr09	irgsp1_rep	CDS	7247246	7247349	.	-	0	Parent=Os09t0298200-02
Chr09	irgsp1_rep	CDS	7247034	7247145	.	-	1	Parent=Os09t0298200-02
Chr09	irgsp1_rep	CDS	7246756	7246854	.	-	0	Parent=Os09t0298200-02
Chr09	irgsp1_rep	CDS	7246563	7246682	.	-	0	Parent=Os09t0298200-02
Chr09	irgsp1_rep	CDS	7245951	7246067	.	-	0	Parent=Os09t0298200-02
Chr09	irgsp1_rep	three_prime_UTR	7245924	7245950	.	-	.	Parent=Os09t0298200-02
Chr09	irgsp1_rep	three_prime_UTR	7245593	7245715	.	-	.	Parent=Os09t0298200-02
Chr09	irgsp1_rep	mRNA	7245518	7247867	.	+	.	ID=Os09t0298266-00;Name=Os09t0298266-00;Locus_id=Os09g0298266;Note=Hypothetical gene.;Transcript_evidence=BT016913 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0298266-00;KEGG=Os09t0298266-00
Chr09	irgsp1_rep	five_prime_UTR	7245518	7245710	.	+	.	Parent=Os09t0298266-00
Chr09	irgsp1_rep	five_prime_UTR	7245921	7246052	.	+	.	Parent=Os09t0298266-00
Chr09	irgsp1_rep	five_prime_UTR	7246543	7246553	.	+	.	Parent=Os09t0298266-00
Chr09	irgsp1_rep	CDS	7246554	7246670	.	+	0	Parent=Os09t0298266-00
Chr09	irgsp1_rep	CDS	7246740	7246844	.	+	0	Parent=Os09t0298266-00
Chr09	irgsp1_rep	three_prime_UTR	7246845	7246846	.	+	.	Parent=Os09t0298266-00
Chr09	irgsp1_rep	three_prime_UTR	7247025	7247145	.	+	.	Parent=Os09t0298266-00
Chr09	irgsp1_rep	three_prime_UTR	7247246	7247337	.	+	.	Parent=Os09t0298266-00
Chr09	irgsp1_rep	three_prime_UTR	7247519	7247705	.	+	.	Parent=Os09t0298266-00
Chr09	irgsp1_rep	three_prime_UTR	7247796	7247867	.	+	.	Parent=Os09t0298266-00
Chr09	irgsp1_rep	mRNA	7262920	7263701	.	+	.	ID=Os09t0298332-00;Name=Os09t0298332-00;Locus_id=Os09g0298332;Note=Conserved hypothetical protein.;Transcript_evidence=FP101627 (DDBJ);ORF_evidence=NP_001046143.1 (RefSeq);TENOR=Os09t0298332-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	7262920	7263021	.	+	.	Parent=Os09t0298332-00
Chr09	irgsp1_rep	CDS	7263022	7263158	.	+	0	Parent=Os09t0298332-00
Chr09	irgsp1_rep	CDS	7263305	7263602	.	+	1	Parent=Os09t0298332-00
Chr09	irgsp1_rep	three_prime_UTR	7263603	7263701	.	+	.	Parent=Os09t0298332-00
Chr09	irgsp1_rep	mRNA	7271228	7276768	.	+	.	ID=Os09t0298400-01;Name=Os09t0298400-01;Locus_id=Os09g0298400;Oryzabase Gene Symbol Synonym(s)=OsWD40-170;Note=WD40/YVTN repeat-like domain containing protein.;Transcript_evidence=AK111666 (DDBJ%2C Best hit);ORF_evidence=NP_200424.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J013154E12;Oryzabase=10851;Expression=AK111666;TENOR=Os09t0298400-01;KEGG=Os09t0298400-01
Chr09	irgsp1_rep	five_prime_UTR	7271228	7271449	.	+	.	Parent=Os09t0298400-01
Chr09	irgsp1_rep	CDS	7271450	7271560	.	+	0	Parent=Os09t0298400-01
Chr09	irgsp1_rep	CDS	7272214	7272309	.	+	0	Parent=Os09t0298400-01
Chr09	irgsp1_rep	CDS	7272830	7272959	.	+	0	Parent=Os09t0298400-01
Chr09	irgsp1_rep	CDS	7273325	7273413	.	+	2	Parent=Os09t0298400-01
Chr09	irgsp1_rep	CDS	7273952	7274020	.	+	0	Parent=Os09t0298400-01
Chr09	irgsp1_rep	CDS	7274417	7274474	.	+	0	Parent=Os09t0298400-01
Chr09	irgsp1_rep	CDS	7274562	7274673	.	+	2	Parent=Os09t0298400-01
Chr09	irgsp1_rep	CDS	7275667	7275753	.	+	1	Parent=Os09t0298400-01
Chr09	irgsp1_rep	CDS	7275985	7276063	.	+	1	Parent=Os09t0298400-01
Chr09	irgsp1_rep	CDS	7276156	7276288	.	+	0	Parent=Os09t0298400-01
Chr09	irgsp1_rep	CDS	7276542	7276576	.	+	2	Parent=Os09t0298400-01
Chr09	irgsp1_rep	three_prime_UTR	7276577	7276768	.	+	.	Parent=Os09t0298400-01
Chr09	irgsp1_rep	mRNA	7277255	7282211	.	-	.	ID=Os09t0298500-01;Name=Os09t0298500-01;Locus_id=Os09g0298500;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK064311 (DDBJ%2C Best hit);ORF_evidence=B4F8X0 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=002-107-C03;Expression=AK064311;TENOR=Os09t0298500-01;KEGG=Os09t0298500-01
Chr09	irgsp1_rep	five_prime_UTR	7282136	7282211	.	-	.	Parent=Os09t0298500-01
Chr09	irgsp1_rep	CDS	7281989	7282135	.	-	0	Parent=Os09t0298500-01
Chr09	irgsp1_rep	CDS	7280159	7280251	.	-	0	Parent=Os09t0298500-01
Chr09	irgsp1_rep	CDS	7277581	7278939	.	-	0	Parent=Os09t0298500-01
Chr09	irgsp1_rep	three_prime_UTR	7277255	7277580	.	-	.	Parent=Os09t0298500-01
Chr09	irgsp1_rep	mRNA	7281526	7282187	.	-	.	ID=Os09t0298500-02;Name=Os09t0298500-02;Locus_id=Os09g0298500;Note=Similar to Protein binding protein.;Transcript_evidence=AK062446 (DDBJ%2C Best hit);ORF_evidence=A2YZK4 (UniProt);NIAS_FLcDNA=001-103-B06;Expression=AK062446;TENOR=Os09t0298500-02;KEGG=Os09t0298500-02
Chr09	irgsp1_rep	five_prime_UTR	7282136	7282187	.	-	.	Parent=Os09t0298500-02
Chr09	irgsp1_rep	CDS	7281923	7282135	.	-	0	Parent=Os09t0298500-02
Chr09	irgsp1_rep	three_prime_UTR	7281526	7281922	.	-	.	Parent=Os09t0298500-02
Chr09	irgsp1_rep	mRNA	7293013	7300542	.	-	.	ID=Os09t0298700-01;Name=Os09t0298700-01;Locus_id=Os09g0298700;Oryzabase Gene Symbol Synonym(s)=OsRRM;Oryzabase Gene Name Synonym(s)=RNA recognition motif;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK100889 (DDBJ%2C Best hit);ORF_evidence=B8BEA3 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677),Spen paralogue and orthologue SPOC%2C C-terminal (IPR012921);NIAS_FLcDNA=J023129A05;Oryzabase=12353;Expression=AK100889;TENOR=Os09t0298700-01;KEGG=Os09t0298700-01
Chr09	irgsp1_rep	five_prime_UTR	7300441	7300542	.	-	.	Parent=Os09t0298700-01
Chr09	irgsp1_rep	CDS	7299970	7300332	.	-	0	Parent=Os09t0298700-01
Chr09	irgsp1_rep	CDS	7296231	7297441	.	-	0	Parent=Os09t0298700-01
Chr09	irgsp1_rep	CDS	7294313	7295756	.	-	1	Parent=Os09t0298700-01
Chr09	irgsp1_rep	three_prime_UTR	7294306	7294312	.	-	.	Parent=Os09t0298700-01
Chr09	irgsp1_rep	three_prime_UTR	7293013	7293337	.	-	.	Parent=Os09t0298700-01
Chr09	irgsp1_rep	mRNA	7316075	7322207	.	+	.	ID=Os09t0299000-01;Name=Os09t0299000-01;Locus_id=Os09g0299000;CGSNL Gene Symbol=PHL3;CGSNL Gene Name=PHR1 LIKE 3;Oryzabase Gene Symbol Synonym(s)=OsPHL3;Oryzabase Gene Name Synonym(s)=PHR1 like3%2C PHOSPHATE STARVATION RESPONSE 1-like 3;Note=Similar to CDPK substrate protein 1.;Transcript_evidence=AK069336 (DDBJ%2C Best hit);ORF_evidence=B6TTD2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J023010K22;Oryzabase=22585;Expression=AK069336;TENOR=Os09t0299000-01;KEGG=Os09t0299000-01
Chr09	irgsp1_rep	five_prime_UTR	7316075	7316393	.	+	.	Parent=Os09t0299000-01
Chr09	irgsp1_rep	CDS	7316394	7316565	.	+	0	Parent=Os09t0299000-01
Chr09	irgsp1_rep	CDS	7319399	7319475	.	+	2	Parent=Os09t0299000-01
Chr09	irgsp1_rep	CDS	7319549	7319629	.	+	0	Parent=Os09t0299000-01
Chr09	irgsp1_rep	three_prime_UTR	7319630	7321073	.	+	.	Parent=Os09t0299000-01
Chr09	irgsp1_rep	three_prime_UTR	7321201	7321270	.	+	.	Parent=Os09t0299000-01
Chr09	irgsp1_rep	three_prime_UTR	7321668	7322207	.	+	.	Parent=Os09t0299000-01
Chr09	irgsp1_rep	mRNA	7316075	7322324	.	+	.	ID=Os09t0299000-02;Name=Os09t0299000-02;Locus_id=Os09g0299000;RAP-DB Gene Symbol Synonym(s)=OsPHL3;RAP-DB Gene Name Synonym(s)=PHR1 like3;CGSNL Gene Symbol=PHL3;CGSNL Gene Name=PHR1 LIKE 3;Oryzabase Gene Symbol Synonym(s)=OsPHL3;Oryzabase Gene Name Synonym(s)=PHR1 like3%2C PHOSPHATE STARVATION RESPONSE 1-like 3;Note=G2-like family transcription factor%2C Negative regulation of flowering time;Transcript_evidence=Inferred from literature;ORF_evidence=B9G2Q6;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeobox-like domain superfamily (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930),Myb domain%2C plants (IPR006447),MYB-CC type transcription factor%2C LHEQLE-containing domain (IPR025756);Manual Curation=August 13%2C 2018;Literature_PMID=30081823;Oryzabase=22585;Subcellular location=nucleus (GO:0005634)
Chr09	irgsp1_rep	five_prime_UTR	7316075	7316393	.	+	.	Parent=Os09t0299000-02
Chr09	irgsp1_rep	CDS	7316394	7316565	.	+	0	Parent=Os09t0299000-02
Chr09	irgsp1_rep	CDS	7319399	7319475	.	+	2	Parent=Os09t0299000-02
Chr09	irgsp1_rep	CDS	7319549	7319603	.	+	0	Parent=Os09t0299000-02
Chr09	irgsp1_rep	CDS	7321004	7321073	.	+	2	Parent=Os09t0299000-02
Chr09	irgsp1_rep	CDS	7321201	7321270	.	+	1	Parent=Os09t0299000-02
Chr09	irgsp1_rep	CDS	7321668	7321976	.	+	0	Parent=Os09t0299000-02
Chr09	irgsp1_rep	three_prime_UTR	7321977	7322324	.	+	.	Parent=Os09t0299000-02
Chr09	irgsp1_rep	mRNA	7329560	7333289	.	+	.	ID=Os09t0299200-01;Name=Os09t0299200-01;Locus_id=Os09g0299200;RAP-DB Gene Symbol Synonym(s)=OsMYBc%2C MYBc;RAP-DB Gene Name Synonym(s)=MYB coiled-coil type transcription factor;Oryzabase Gene Symbol Synonym(s)=OsMYBc%2C MYBc;Oryzabase Gene Name Synonym(s)=MYB coiled-coil type transcription factor;Note=MYB-type transcription factor%2C Reguration of high-affinity potassium transporter%2C Salt tolerance;Transcript_evidence=AK103241;ORF_evidence=Q69TN6;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeodomain-like (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930),Myb domain%2C plants (IPR006447),MYB-CC type transcription factor%2C LHEQLE-containing domain (IPR025756);NIAS_FLcDNA=J033123H06;Manual Curation=July 16%2C 2015;Literature_PMID=25991736;Oryzabase=19827;TENOR=Os09t0299200-01
Chr09	irgsp1_rep	five_prime_UTR	7329560	7329794	.	+	.	Parent=Os09t0299200-01
Chr09	irgsp1_rep	five_prime_UTR	7330739	7330816	.	+	.	Parent=Os09t0299200-01
Chr09	irgsp1_rep	CDS	7330817	7330958	.	+	0	Parent=Os09t0299200-01
Chr09	irgsp1_rep	CDS	7331167	7331243	.	+	2	Parent=Os09t0299200-01
Chr09	irgsp1_rep	CDS	7331334	7331376	.	+	0	Parent=Os09t0299200-01
Chr09	irgsp1_rep	CDS	7331464	7331521	.	+	2	Parent=Os09t0299200-01
Chr09	irgsp1_rep	CDS	7332110	7332179	.	+	1	Parent=Os09t0299200-01
Chr09	irgsp1_rep	CDS	7332390	7332866	.	+	0	Parent=Os09t0299200-01
Chr09	irgsp1_rep	three_prime_UTR	7332867	7333289	.	+	.	Parent=Os09t0299200-01
Chr09	irgsp1_rep	mRNA	7334523	7335240	.	+	.	ID=Os09t0299300-00;Name=Os09t0299300-00;Locus_id=Os09g0299300;Note=Similar to predicted protein.;Transcript_evidence=CT835907 (DDBJ%2C Best hit);ORF_evidence=Q69TN5 (UniProt);InterPro=Chromosome transmission fidelity protein 8 (IPR018607);TENOR=Os09t0299300-00;KEGG=Os09t0299300-00
Chr09	irgsp1_rep	CDS	7334523	7334610	.	+	0	Parent=Os09t0299300-00
Chr09	irgsp1_rep	CDS	7334894	7334967	.	+	2	Parent=Os09t0299300-00
Chr09	irgsp1_rep	three_prime_UTR	7334968	7335240	.	+	.	Parent=Os09t0299300-00
Chr09	irgsp1_rep	mRNA	7336243	7340325	.	-	.	ID=Os09t0299400-00;Name=Os09t0299400-00;Locus_id=Os09g0299400;Note=Similar to TPK1.;Transcript_evidence=AK375335 (DDBJ);ORF_evidence=A9QMN9 (UniProt);GO=Biological Process: potassium ion transmembrane transport (GO:0071805),Cellular Component: membrane (GO:0016020),Molecular Function: potassium channel activity (GO:0005267),Molecular Function: calcium ion binding (GO:0005509);InterPro=Potassium channel%2C two pore (IPR003280),EF-hand-like domain (IPR011992),Ion transport 2 (IPR013099),EF-Hand 1%2C calcium-binding site (IPR018247);TENOR=Os09t0299400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	7340315	7340325	.	-	.	Parent=Os09t0299400-00
Chr09	irgsp1_rep	CDS	7339134	7340314	.	-	0	Parent=Os09t0299400-00
Chr09	irgsp1_rep	CDS	7336374	7336563	.	-	1	Parent=Os09t0299400-00
Chr09	irgsp1_rep	three_prime_UTR	7336243	7336373	.	-	.	Parent=Os09t0299400-00
Chr09	irgsp1_rep	mRNA	7347444	7351867	.	-	.	ID=Os09t0299500-01;Name=Os09t0299500-01;Locus_id=Os09g0299500;Note=Similar to predicted protein.;Transcript_evidence=AK243082 (DDBJ%2C Best hit);ORF_evidence=NP_564565.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J100020J18;TENOR=Os09t0299500-01;KEGG=Os09t0299500-01
Chr09	irgsp1_rep	five_prime_UTR	7351731	7351867	.	-	.	Parent=Os09t0299500-01
Chr09	irgsp1_rep	five_prime_UTR	7351273	7351279	.	-	.	Parent=Os09t0299500-01
Chr09	irgsp1_rep	CDS	7351156	7351272	.	-	0	Parent=Os09t0299500-01
Chr09	irgsp1_rep	CDS	7350690	7351041	.	-	0	Parent=Os09t0299500-01
Chr09	irgsp1_rep	CDS	7350574	7350587	.	-	2	Parent=Os09t0299500-01
Chr09	irgsp1_rep	three_prime_UTR	7350387	7350573	.	-	.	Parent=Os09t0299500-01
Chr09	irgsp1_rep	three_prime_UTR	7349506	7349589	.	-	.	Parent=Os09t0299500-01
Chr09	irgsp1_rep	three_prime_UTR	7348536	7348617	.	-	.	Parent=Os09t0299500-01
Chr09	irgsp1_rep	three_prime_UTR	7348336	7348462	.	-	.	Parent=Os09t0299500-01
Chr09	irgsp1_rep	three_prime_UTR	7347444	7348043	.	-	.	Parent=Os09t0299500-01
Chr09	irgsp1_rep	mRNA	7470846	7483164	.	+	.	ID=Os09t0300800-01;Name=Os09t0300800-01;Locus_id=Os09g0300800;Note=Protein of unknown function DUF247%2C plant family protein.;Transcript_evidence=AK063465 (DDBJ%2C Best hit);ORF_evidence=B9G2Q9 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);NIAS_FLcDNA=001-115-H07;Expression=AK063465;TENOR=Os09t0300800-01;KEGG=Os09t0300800-01
Chr09	irgsp1_rep	five_prime_UTR	7470846	7470920	.	+	.	Parent=Os09t0300800-01
Chr09	irgsp1_rep	CDS	7470921	7470936	.	+	0	Parent=Os09t0300800-01
Chr09	irgsp1_rep	CDS	7481176	7482530	.	+	2	Parent=Os09t0300800-01
Chr09	irgsp1_rep	three_prime_UTR	7482531	7482577	.	+	.	Parent=Os09t0300800-01
Chr09	irgsp1_rep	three_prime_UTR	7482659	7483164	.	+	.	Parent=Os09t0300800-01
Chr09	irgsp1_rep	mRNA	7519040	7523188	.	+	.	ID=Os09t0301800-01;Name=Os09t0301800-01;Locus_id=Os09g0301800;Note=Hypothetical conserved gene.;Transcript_evidence=AK288767 (DDBJ%2C Best hit);ORF_evidence=Q69LI0 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);NIAS_FLcDNA=J090067J01;TENOR=Os09t0301800-01;KEGG=Os09t0301800-01
Chr09	irgsp1_rep	five_prime_UTR	7519040	7520755	.	+	.	Parent=Os09t0301800-01
Chr09	irgsp1_rep	CDS	7520756	7522324	.	+	0	Parent=Os09t0301800-01
Chr09	irgsp1_rep	three_prime_UTR	7522325	7523188	.	+	.	Parent=Os09t0301800-01
Chr09	irgsp1_rep	mRNA	7536715	7539761	.	+	.	ID=Os09t0302233-00;Name=Os09t0302233-00;Locus_id=Os09g0302233;Note=Similar to Zinc knuckle domain-like.;Transcript_evidence=EU964639 (DDBJ);ORF_evidence=C8TEU4 (UniProt);TENOR=Os09t0302233-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	7536715	7537187	.	+	0	Parent=Os09t0302233-00
Chr09	irgsp1_rep	CDS	7539182	7539761	.	+	1	Parent=Os09t0302233-00
Chr09	irgsp1_rep	mRNA	7691967	7692452	.	-	.	ID=Os09t0303750-00;Name=Os09t0303750-00;Locus_id=Os09g0303750;Note=Conserved hypothetical protein.;Transcript_evidence=AK372466 (DDBJ);ORF_evidence=Q6K2H9 (UniProt);TENOR=Os09t0303750-00
Chr09	irgsp1_rep	CDS	7691967	7692452	.	-	0	Parent=Os09t0303750-00
Chr09	irgsp1_rep	mRNA	7741326	7742952	.	-	.	ID=Os09t0304400-00;Name=Os09t0304400-00;Locus_id=Os09g0304400;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q69K90 (UniProt);TENOR=Os09t0304400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	7742871	7742952	.	-	0	Parent=Os09t0304400-00
Chr09	irgsp1_rep	CDS	7742367	7742468	.	-	2	Parent=Os09t0304400-00
Chr09	irgsp1_rep	CDS	7741551	7741596	.	-	2	Parent=Os09t0304400-00
Chr09	irgsp1_rep	CDS	7741326	7741383	.	-	1	Parent=Os09t0304400-00
Chr09	irgsp1_rep	mRNA	7753372	7755377	.	+	.	ID=Os09t0304500-01;Name=Os09t0304500-01;Locus_id=Os09g0304500;Note=Protein of unknown function DUF247%2C plant family protein.;Transcript_evidence=AK061363 (DDBJ%2C Best hit);ORF_evidence=B9G2R3 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);NIAS_FLcDNA=006-304-C06;Expression=AK061363;TENOR=Os09t0304500-01;KEGG=Os09t0304500-01
Chr09	irgsp1_rep	five_prime_UTR	7753372	7753431	.	+	.	Parent=Os09t0304500-01
Chr09	irgsp1_rep	CDS	7753432	7753447	.	+	0	Parent=Os09t0304500-01
Chr09	irgsp1_rep	CDS	7753842	7755310	.	+	2	Parent=Os09t0304500-01
Chr09	irgsp1_rep	three_prime_UTR	7755311	7755377	.	+	.	Parent=Os09t0304500-01
Chr09	irgsp1_rep	mRNA	7797868	7800107	.	+	.	ID=Os09t0305300-01;Name=Os09t0305300-01;Locus_id=Os09g0305300;Note=Protein of unknown function DUF247%2C plant family protein.;Transcript_evidence=AK101001 (DDBJ%2C Best hit),AK105016 (DDBJ%2C Best hit);ORF_evidence=B9G2R5 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);NIAS_FLcDNA=J023147E24,001-008-F02;TENOR=Os09t0305300-01
Chr09	irgsp1_rep	five_prime_UTR	7797868	7797924	.	+	.	Parent=Os09t0305300-01
Chr09	irgsp1_rep	CDS	7797925	7797946	.	+	0	Parent=Os09t0305300-01
Chr09	irgsp1_rep	CDS	7798337	7799718	.	+	2	Parent=Os09t0305300-01
Chr09	irgsp1_rep	three_prime_UTR	7799719	7800107	.	+	.	Parent=Os09t0305300-01
Chr09	irgsp1_rep	mRNA	7843134	7844185	.	+	.	ID=Os09t0305900-00;Name=Os09t0305900-00;Locus_id=Os09g0305900;CGSNL Gene Symbol=C3H58;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58;Oryzabase Gene Symbol Synonym(s)=OsC3H58;Oryzabase Gene Name Synonym(s)=Putative zinc finger CCCH domain-containing protein 58;Note=Putative zinc finger CCCH domain-containing protein 58.;Transcript_evidence=Q69KP0 (UniProt);ORF_evidence=Q69KP0 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);Oryzabase=8624;TENOR=Os09t0305900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	7843134	7843514	.	+	0	Parent=Os09t0305900-00
Chr09	irgsp1_rep	CDS	7843808	7844185	.	+	0	Parent=Os09t0305900-00
Chr09	irgsp1_rep	mRNA	7871403	7872533	.	-	.	ID=Os09t0306232-01;Name=Os09t0306232-01;Locus_id=Os09g0306232;Note=Hypothetical gene.;Transcript_evidence=AK241840 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065213M18;TENOR=Os09t0306232-01;KEGG=Os09t0306232-01
Chr09	irgsp1_rep	five_prime_UTR	7872133	7872533	.	-	.	Parent=Os09t0306232-01
Chr09	irgsp1_rep	CDS	7871908	7872132	.	-	0	Parent=Os09t0306232-01
Chr09	irgsp1_rep	three_prime_UTR	7871403	7871907	.	-	.	Parent=Os09t0306232-01
Chr09	irgsp1_rep	mRNA	7871589	7873655	.	+	.	ID=Os09t0306400-01;Name=Os09t0306400-01;Locus_id=Os09g0306400;RAP-DB Gene Symbol Synonym(s)=BZIP71%2C OsbZIP71;RAP-DB Gene Name Synonym(s)=b-ZIP TRANSCRIPTION FACTOR 71%2C b-ZIP transcription factor 71;CGSNL Gene Symbol=BZIP71;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 71;Oryzabase Gene Symbol Synonym(s)=OsbZIP71%2C DLN221%2C OsDLN221%2C DLN222%2C OsDLN222;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 71%2C DLN repressor 221%2C DLN motif protein 221%2C DLN repressor 222%2C DLN motif protein 222;Note=bZIP transcription factor%2C Drought and salt tolerance;Transcript_evidence=AK064903,AK072360,AK098869;ORF_evidence=Q69KN5;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Basic-leucine zipper domain (IPR004827);NIAS_FLcDNA=J013000L18, J023058F04, J013001A19;Manual Curation=September 28%2C 2015;Literature_PMID=23918260;Oryzabase=10151;TENOR=Os09t0306400-01
Chr09	irgsp1_rep	five_prime_UTR	7871589	7872376	.	+	.	Parent=Os09t0306400-01
Chr09	irgsp1_rep	CDS	7872377	7872556	.	+	0	Parent=Os09t0306400-01
Chr09	irgsp1_rep	CDS	7872974	7873255	.	+	0	Parent=Os09t0306400-01
Chr09	irgsp1_rep	three_prime_UTR	7873256	7873655	.	+	.	Parent=Os09t0306400-01
Chr09	irgsp1_rep	mRNA	7878893	7879244	.	+	.	ID=Os09t0306450-00;Name=Os09t0306450-00;Locus_id=Os09g0306450;Note=Hypothetical protein.;Transcript_evidence=AK375135 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0306450-00
Chr09	irgsp1_rep	five_prime_UTR	7878893	7878893	.	+	.	Parent=Os09t0306450-00
Chr09	irgsp1_rep	CDS	7878894	7879244	.	+	0	Parent=Os09t0306450-00
Chr09	irgsp1_rep	mRNA	7888136	7888575	.	-	.	ID=Os09t0306500-00;Name=Os09t0306500-00;Locus_id=Os09g0306500;Note=Similar to DVL6/RTFL16 (ROTUNDIFOLIA LIKE 16).;Transcript_evidence=CT835833 (DDBJ%2C Best hit);ORF_evidence=NP_850631.2 (RefSeq);InterPro=DVL (IPR012552);TENOR=Os09t0306500-00;KEGG=Os09t0306500-00
Chr09	irgsp1_rep	five_prime_UTR	7888480	7888575	.	-	.	Parent=Os09t0306500-00
Chr09	irgsp1_rep	CDS	7888366	7888479	.	-	0	Parent=Os09t0306500-00
Chr09	irgsp1_rep	three_prime_UTR	7888136	7888365	.	-	.	Parent=Os09t0306500-00
Chr09	irgsp1_rep	mRNA	7891166	7892173	.	+	.	ID=Os09t0306566-00;Name=Os09t0306566-00;Locus_id=Os09g0306566;Note=Hypothetical conserved gene.;Transcript_evidence=EU954190 (DDBJ);ORF_evidence=B6SN75 (UniProt);InterPro=DVL (IPR012552);TENOR=Os09t0306566-00;KEGG=Os09t0306566-00
Chr09	irgsp1_rep	five_prime_UTR	7891166	7891731	.	+	.	Parent=Os09t0306566-00
Chr09	irgsp1_rep	CDS	7891732	7891851	.	+	0	Parent=Os09t0306566-00
Chr09	irgsp1_rep	three_prime_UTR	7891852	7892173	.	+	.	Parent=Os09t0306566-00
Chr09	irgsp1_rep	mRNA	7893502	7894014	.	-	.	ID=Os09t0306632-00;Name=Os09t0306632-00;Locus_id=Os09g0306632;Note=Hypothetical conserved gene.;Transcript_evidence=EU973413 (DDBJ);ORF_evidence=B6SRL4 (UniProt);InterPro=DVL (IPR012552);TENOR=Os09t0306632-00;KEGG=Os09t0306632-00
Chr09	irgsp1_rep	CDS	7893751	7894014	.	-	0	Parent=Os09t0306632-00
Chr09	irgsp1_rep	three_prime_UTR	7893502	7893750	.	-	.	Parent=Os09t0306632-00
Chr09	irgsp1_rep	mRNA	7901645	7904132	.	-	.	ID=Os09t0306650-01;Name=Os09t0306650-01;Locus_id=Os09g0306650;Note=Hypothetical conserved gene.;Transcript_evidence=AK287886 (DDBJ%2C Best hit);ORF_evidence=NP_001175757.1 (RefSeq);NIAS_FLcDNA=J065207N19;TENOR=Os09t0306650-01;KEGG=Os09t0306650-01
Chr09	irgsp1_rep	five_prime_UTR	7904089	7904132	.	-	.	Parent=Os09t0306650-01
Chr09	irgsp1_rep	CDS	7903686	7904088	.	-	0	Parent=Os09t0306650-01
Chr09	irgsp1_rep	CDS	7902669	7902789	.	-	2	Parent=Os09t0306650-01
Chr09	irgsp1_rep	CDS	7901794	7901830	.	-	1	Parent=Os09t0306650-01
Chr09	irgsp1_rep	three_prime_UTR	7901645	7901793	.	-	.	Parent=Os09t0306650-01
Chr09	irgsp1_rep	mRNA	7914083	7925334	.	+	.	ID=Os09t0306700-01;Name=Os09t0306700-01;Locus_id=Os09g0306700;RAP-DB Gene Symbol Synonym(s)=OsMED25;RAP-DB Gene Name Synonym(s)=mediator subunit 25;CGSNL Gene Symbol=PFT1;CGSNL Gene Name=PHYTOCHROME AND FLOWERING TIME 1;Oryzabase Gene Symbol Synonym(s)=OsPFT1%2C OsMED25_1%2C MED25_1%2C OsMED25%2C MED25;Oryzabase Gene Name Synonym(s)=Mediator 25_1%2C mediator subunit 25;Note=Mediator subunit 25%2C Regulation of brassinosteroid (BR) signaling and plant architecture;Transcript_evidence=AK243232;ORF_evidence=Q69KN1;InterPro=Mediator complex%2C subunit Med25%2C von Willebrand factor type A (IPR021419);NIAS_FLcDNA=J100045B11;Manual Curation=January 30%2C 2020;Literature_PMID=31990125;Oryzabase=19092;TENOR=Os09t0306700-01;KEGG=Os09t0306700-01;Subcellular location=nucleus (GO:0005634), membrane (GO:0016020), cytoplasm (GO:0005737)
Chr09	irgsp1_rep	five_prime_UTR	7914083	7914275	.	+	.	Parent=Os09t0306700-01
Chr09	irgsp1_rep	CDS	7914276	7914385	.	+	0	Parent=Os09t0306700-01
Chr09	irgsp1_rep	CDS	7915794	7915824	.	+	1	Parent=Os09t0306700-01
Chr09	irgsp1_rep	CDS	7915926	7915989	.	+	0	Parent=Os09t0306700-01
Chr09	irgsp1_rep	CDS	7916110	7916240	.	+	2	Parent=Os09t0306700-01
Chr09	irgsp1_rep	CDS	7917763	7917972	.	+	0	Parent=Os09t0306700-01
Chr09	irgsp1_rep	CDS	7918079	7918144	.	+	0	Parent=Os09t0306700-01
Chr09	irgsp1_rep	CDS	7919056	7919263	.	+	0	Parent=Os09t0306700-01
Chr09	irgsp1_rep	CDS	7920458	7920513	.	+	2	Parent=Os09t0306700-01
Chr09	irgsp1_rep	CDS	7920594	7921316	.	+	0	Parent=Os09t0306700-01
Chr09	irgsp1_rep	CDS	7922434	7922487	.	+	0	Parent=Os09t0306700-01
Chr09	irgsp1_rep	CDS	7922855	7922883	.	+	0	Parent=Os09t0306700-01
Chr09	irgsp1_rep	CDS	7923516	7923584	.	+	1	Parent=Os09t0306700-01
Chr09	irgsp1_rep	CDS	7923689	7923773	.	+	1	Parent=Os09t0306700-01
Chr09	irgsp1_rep	CDS	7924236	7924322	.	+	0	Parent=Os09t0306700-01
Chr09	irgsp1_rep	CDS	7924410	7925015	.	+	0	Parent=Os09t0306700-01
Chr09	irgsp1_rep	three_prime_UTR	7925016	7925334	.	+	.	Parent=Os09t0306700-01
Chr09	irgsp1_rep	mRNA	7925628	7938161	.	-	.	ID=Os09t0306800-01;Name=Os09t0306800-01;Locus_id=Os09g0306800;RAP-DB Gene Symbol Synonym(s)=OsEMF2b;RAP-DB Gene Name Synonym(s)=EMBRYONIC FLOWER 2b;CGSNL Gene Symbol=EMF2B;CGSNL Gene Name=EMBRYONIC FLOWER 2B;Oryzabase Gene Symbol Synonym(s)=OsEMF2b%2C EMF2b;Oryzabase Gene Name Synonym(s)=EMBRYONIC FLOWER 2b;Note=Polycomb group protein%2C Supressor of Zeste(12) homolog%2C Component of the polycomb repression complex 2 (PRC2)%2C Control of flowering time;Transcript_evidence=AK100856;ORF_evidence=Q69KN0;InterPro=Polycomb protein%2C VEFS-Box (IPR019135);NIAS_FLcDNA=J023123L01;Manual Curation=October 12%2C 2017;Literature_PMID=26795142,23083333,22973062,19825651;Oryzabase=8838;Expression=AK100856;TENOR=Os09t0306800-01;KEGG=Os09t0306800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	7937954	7938161	.	-	.	Parent=Os09t0306800-01
Chr09	irgsp1_rep	five_prime_UTR	7937667	7937673	.	-	.	Parent=Os09t0306800-01
Chr09	irgsp1_rep	CDS	7937541	7937666	.	-	0	Parent=Os09t0306800-01
Chr09	irgsp1_rep	CDS	7937357	7937412	.	-	0	Parent=Os09t0306800-01
Chr09	irgsp1_rep	CDS	7935309	7935423	.	-	1	Parent=Os09t0306800-01
Chr09	irgsp1_rep	CDS	7935077	7935233	.	-	0	Parent=Os09t0306800-01
Chr09	irgsp1_rep	CDS	7934925	7934993	.	-	2	Parent=Os09t0306800-01
Chr09	irgsp1_rep	CDS	7933858	7933994	.	-	2	Parent=Os09t0306800-01
Chr09	irgsp1_rep	CDS	7933495	7933554	.	-	0	Parent=Os09t0306800-01
Chr09	irgsp1_rep	CDS	7933238	7933362	.	-	0	Parent=Os09t0306800-01
Chr09	irgsp1_rep	CDS	7932393	7932457	.	-	1	Parent=Os09t0306800-01
Chr09	irgsp1_rep	CDS	7930998	7931050	.	-	2	Parent=Os09t0306800-01
Chr09	irgsp1_rep	CDS	7930459	7930512	.	-	0	Parent=Os09t0306800-01
Chr09	irgsp1_rep	CDS	7930314	7930373	.	-	0	Parent=Os09t0306800-01
Chr09	irgsp1_rep	CDS	7930192	7930238	.	-	0	Parent=Os09t0306800-01
Chr09	irgsp1_rep	CDS	7929986	7930122	.	-	1	Parent=Os09t0306800-01
Chr09	irgsp1_rep	CDS	7929302	7929428	.	-	2	Parent=Os09t0306800-01
Chr09	irgsp1_rep	CDS	7929132	7929180	.	-	1	Parent=Os09t0306800-01
Chr09	irgsp1_rep	CDS	7927069	7927152	.	-	0	Parent=Os09t0306800-01
Chr09	irgsp1_rep	CDS	7926908	7926987	.	-	0	Parent=Os09t0306800-01
Chr09	irgsp1_rep	CDS	7926174	7926263	.	-	1	Parent=Os09t0306800-01
Chr09	irgsp1_rep	CDS	7925918	7926041	.	-	1	Parent=Os09t0306800-01
Chr09	irgsp1_rep	three_prime_UTR	7925628	7925917	.	-	.	Parent=Os09t0306800-01
Chr09	irgsp1_rep	mRNA	7925898	7937687	.	+	.	ID=Os09t0307050-00;Name=Os09t0307050-00;Locus_id=Os09g0307050;Note=Non-protein coding transcript.;Transcript_evidence=tplb0054d13 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os09t0307050-00
Chr09	irgsp1_rep	exon	7925898	7926043	.	+	.	Parent=Os09t0307050-00
Chr09	irgsp1_rep	exon	7926179	7926258	.	+	.	Parent=Os09t0307050-00
Chr09	irgsp1_rep	exon	7926901	7927036	.	+	.	Parent=Os09t0307050-00
Chr09	irgsp1_rep	exon	7929105	7929166	.	+	.	Parent=Os09t0307050-00
Chr09	irgsp1_rep	exon	7929292	7929381	.	+	.	Parent=Os09t0307050-00
Chr09	irgsp1_rep	exon	7929891	7930135	.	+	.	Parent=Os09t0307050-00
Chr09	irgsp1_rep	exon	7930270	7930497	.	+	.	Parent=Os09t0307050-00
Chr09	irgsp1_rep	exon	7933188	7933402	.	+	.	Parent=Os09t0307050-00
Chr09	irgsp1_rep	exon	7933842	7934021	.	+	.	Parent=Os09t0307050-00
Chr09	irgsp1_rep	exon	7935048	7935253	.	+	.	Parent=Os09t0307050-00
Chr09	irgsp1_rep	exon	7935332	7935411	.	+	.	Parent=Os09t0307050-00
Chr09	irgsp1_rep	exon	7937346	7937413	.	+	.	Parent=Os09t0307050-00
Chr09	irgsp1_rep	exon	7937542	7937687	.	+	.	Parent=Os09t0307050-00
Chr09	irgsp1_rep	mRNA	7964048	7967910	.	+	.	ID=Os09t0307300-01;Name=Os09t0307300-01;Locus_id=Os09g0307300;Note=Targeting for Xklp2 family protein.;Transcript_evidence=AK066404 (DDBJ%2C Best hit);ORF_evidence=B8BE75 (UniProt);InterPro=Xklp2 targeting protein (IPR009675);NIAS_FLcDNA=J013060B12;Expression=AK066404;TENOR=Os09t0307300-01;KEGG=Os09t0307300-01
Chr09	irgsp1_rep	five_prime_UTR	7964048	7964136	.	+	.	Parent=Os09t0307300-01
Chr09	irgsp1_rep	CDS	7964137	7964169	.	+	0	Parent=Os09t0307300-01
Chr09	irgsp1_rep	CDS	7964982	7965062	.	+	0	Parent=Os09t0307300-01
Chr09	irgsp1_rep	CDS	7965923	7966030	.	+	0	Parent=Os09t0307300-01
Chr09	irgsp1_rep	CDS	7966145	7966234	.	+	0	Parent=Os09t0307300-01
Chr09	irgsp1_rep	CDS	7966352	7966411	.	+	0	Parent=Os09t0307300-01
Chr09	irgsp1_rep	CDS	7966553	7966675	.	+	0	Parent=Os09t0307300-01
Chr09	irgsp1_rep	three_prime_UTR	7966676	7967910	.	+	.	Parent=Os09t0307300-01
Chr09	irgsp1_rep	mRNA	7966349	7967912	.	+	.	ID=Os09t0307300-02;Name=Os09t0307300-02;Locus_id=Os09g0307300;Note=Similar to Microtubule-associated protein.;Transcript_evidence=AK062197 (DDBJ%2C Best hit);ORF_evidence=A5X7Z1 (UniProt);InterPro=Xklp2 targeting protein (IPR009675);NIAS_FLcDNA=001-046-G01;Expression=AK062197;TENOR=Os09t0307300-02;KEGG=Os09t0307300-02
Chr09	irgsp1_rep	CDS	7966349	7966411	.	+	0	Parent=Os09t0307300-02
Chr09	irgsp1_rep	CDS	7966553	7966645	.	+	0	Parent=Os09t0307300-02
Chr09	irgsp1_rep	CDS	7967402	7967515	.	+	0	Parent=Os09t0307300-02
Chr09	irgsp1_rep	three_prime_UTR	7967516	7967912	.	+	.	Parent=Os09t0307300-02
Chr09	irgsp1_rep	mRNA	7995705	7997271	.	+	.	ID=Os09t0307400-00;Name=Os09t0307400-00;Locus_id=Os09g0307400;Note=Similar to zinc finger%2C C2H2 type family protein.;Transcript_evidence=AK373299 (DDBJ);ORF_evidence=NP_001150708.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880);TENOR=Os09t0307400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	7995705	7995710	.	+	.	Parent=Os09t0307400-00
Chr09	irgsp1_rep	CDS	7995711	7996349	.	+	0	Parent=Os09t0307400-00
Chr09	irgsp1_rep	CDS	7996418	7996963	.	+	0	Parent=Os09t0307400-00
Chr09	irgsp1_rep	three_prime_UTR	7996964	7997271	.	+	.	Parent=Os09t0307400-00
Chr09	irgsp1_rep	mRNA	8039307	8046886	.	-	.	ID=Os09t0307800-01;Name=Os09t0307800-01;Locus_id=Os09g0307800;RAP-DB Gene Symbol Synonym(s)=SDG724%2C LVP1%2C OsSET34;RAP-DB Gene Name Synonym(s)=SET Domain Group Protein 724%2C long vegetative phase1%2C SET protein 34;Oryzabase Gene Symbol Synonym(s)=SDG724%2C LVP1%2C OsSET34;Oryzabase Gene Name Synonym(s)=SET Domain Group Protein 724%2C long vegetative phase1%2C SET protein 34;Note=SET domain-containing histone methyltransferase%2C H3 lysine 36 (H3K36) methylation%2C Flowering promotion;Transcript_evidence=AK060843;ORF_evidence=Q69JB4;GO=Molecular Function: protein binding (GO:0005515),Molecular Function: histone-lysine N-methyltransferase activity (GO:0018024),Cellular Component: nucleus (GO:0005634);InterPro=Histone-lysine N-methyltransferase%2C SET2%2C plant (IPR025787),AWS domain (IPR006560),SET domain (IPR001214),Post-SET domain (IPR003616);NIAS_FLcDNA=001-034-D08;Manual Curation=June 26%2C 2014;Literature_PMID=22892321;Oryzabase=11163;TENOR=Os09t0307800-01;KEGG=Os09t0307800-01 (EC:2.1.1.43)
Chr09	irgsp1_rep	five_prime_UTR	8046762	8046886	.	-	.	Parent=Os09t0307800-01
Chr09	irgsp1_rep	CDS	8046738	8046761	.	-	0	Parent=Os09t0307800-01
Chr09	irgsp1_rep	CDS	8045878	8045995	.	-	0	Parent=Os09t0307800-01
Chr09	irgsp1_rep	CDS	8045248	8045347	.	-	2	Parent=Os09t0307800-01
Chr09	irgsp1_rep	CDS	8044802	8044901	.	-	1	Parent=Os09t0307800-01
Chr09	irgsp1_rep	CDS	8043568	8043646	.	-	0	Parent=Os09t0307800-01
Chr09	irgsp1_rep	CDS	8042291	8042462	.	-	2	Parent=Os09t0307800-01
Chr09	irgsp1_rep	CDS	8042125	8042205	.	-	1	Parent=Os09t0307800-01
Chr09	irgsp1_rep	CDS	8041805	8042008	.	-	1	Parent=Os09t0307800-01
Chr09	irgsp1_rep	CDS	8041343	8041394	.	-	1	Parent=Os09t0307800-01
Chr09	irgsp1_rep	CDS	8041194	8041259	.	-	0	Parent=Os09t0307800-01
Chr09	irgsp1_rep	CDS	8040131	8040157	.	-	0	Parent=Os09t0307800-01
Chr09	irgsp1_rep	three_prime_UTR	8040120	8040130	.	-	.	Parent=Os09t0307800-01
Chr09	irgsp1_rep	three_prime_UTR	8039307	8039680	.	-	.	Parent=Os09t0307800-01
Chr09	irgsp1_rep	mRNA	8039179	8046871	.	-	.	ID=Os09t0307800-02;Name=Os09t0307800-02;Locus_id=Os09g0307800;Oryzabase Gene Symbol Synonym(s)=SDG724%2C LVP1%2C OsSET34;Oryzabase Gene Name Synonym(s)=SET Domain Group Protein 724%2C long vegetative phase1%2C SET protein 34;Note=Similar to histone-lysine N-methyltransferase%2C H3 lysine-36 and H4 lysine-20specific.;Transcript_evidence=AK065670 (DDBJ%2C Best hit);ORF_evidence=NP_001149253.1 (RefSeq);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: histone-lysine N-methyltransferase activity (GO:0018024);InterPro=AWS (IPR006560);NIAS_FLcDNA=J013038F17;Oryzabase=11163;TENOR=Os09t0307800-02;KEGG=Os09t0307800-02
Chr09	irgsp1_rep	five_prime_UTR	8046738	8046871	.	-	.	Parent=Os09t0307800-02
Chr09	irgsp1_rep	five_prime_UTR	8045349	8045995	.	-	.	Parent=Os09t0307800-02
Chr09	irgsp1_rep	CDS	8045248	8045348	.	-	0	Parent=Os09t0307800-02
Chr09	irgsp1_rep	CDS	8044802	8044901	.	-	1	Parent=Os09t0307800-02
Chr09	irgsp1_rep	CDS	8043615	8043656	.	-	0	Parent=Os09t0307800-02
Chr09	irgsp1_rep	three_prime_UTR	8043568	8043614	.	-	.	Parent=Os09t0307800-02
Chr09	irgsp1_rep	three_prime_UTR	8042291	8042380	.	-	.	Parent=Os09t0307800-02
Chr09	irgsp1_rep	three_prime_UTR	8042125	8042205	.	-	.	Parent=Os09t0307800-02
Chr09	irgsp1_rep	three_prime_UTR	8041805	8042008	.	-	.	Parent=Os09t0307800-02
Chr09	irgsp1_rep	three_prime_UTR	8041343	8041394	.	-	.	Parent=Os09t0307800-02
Chr09	irgsp1_rep	three_prime_UTR	8040120	8041259	.	-	.	Parent=Os09t0307800-02
Chr09	irgsp1_rep	three_prime_UTR	8039179	8039680	.	-	.	Parent=Os09t0307800-02
Chr09	irgsp1_rep	mRNA	8132369	8132617	.	-	.	ID=Os09t0308600-01;Name=Os09t0308600-01;Locus_id=Os09g0308600;Note=Non-protein coding transcript.;Transcript_evidence=AK058754 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-001-A01;TENOR=Os09t0308600-01
Chr09	irgsp1_rep	exon	8132369	8132617	.	-	.	Parent=Os09t0308600-01
Chr09	irgsp1_rep	mRNA	8151866	8158558	.	-	.	ID=Os09t0308900-01;Name=Os09t0308900-01;Locus_id=Os09g0308900;Note=Phosphatidic acid phosphatase type 2/haloperoxidase domain containing protein.;Transcript_evidence=AK121946 (DDBJ%2C Best hit);ORF_evidence=NP_001152212.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824);InterPro=Phosphatidic acid phosphatase type 2/haloperoxidase (IPR000326),Phosphatidic acid phosphatase/chloroperoxidase%2C N-terminal (IPR016118);NIAS_FLcDNA=J033107G06;Expression=AK121946;TENOR=Os09t0308900-01;KEGG=Os09t0308900-01
Chr09	irgsp1_rep	five_prime_UTR	8158399	8158558	.	-	.	Parent=Os09t0308900-01
Chr09	irgsp1_rep	five_prime_UTR	8158194	8158276	.	-	.	Parent=Os09t0308900-01
Chr09	irgsp1_rep	five_prime_UTR	8154370	8154375	.	-	.	Parent=Os09t0308900-01
Chr09	irgsp1_rep	CDS	8154157	8154369	.	-	0	Parent=Os09t0308900-01
Chr09	irgsp1_rep	CDS	8153980	8154067	.	-	0	Parent=Os09t0308900-01
Chr09	irgsp1_rep	CDS	8153788	8153897	.	-	2	Parent=Os09t0308900-01
Chr09	irgsp1_rep	CDS	8153562	8153655	.	-	0	Parent=Os09t0308900-01
Chr09	irgsp1_rep	CDS	8152674	8152862	.	-	2	Parent=Os09t0308900-01
Chr09	irgsp1_rep	CDS	8152504	8152563	.	-	2	Parent=Os09t0308900-01
Chr09	irgsp1_rep	CDS	8152248	8152417	.	-	2	Parent=Os09t0308900-01
Chr09	irgsp1_rep	three_prime_UTR	8151866	8152247	.	-	.	Parent=Os09t0308900-01
Chr09	irgsp1_rep	mRNA	8152621	8158346	.	-	.	ID=Os09t0308900-02;Name=Os09t0308900-02;Locus_id=Os09g0308900;Note=Similar to Lipid phosphate phosphatase 3.;Transcript_evidence=AK063079 (DDBJ%2C Best hit);ORF_evidence=B6UA66 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824);InterPro=Phosphatidic acid phosphatase type 2/haloperoxidase (IPR000326),Phosphatidic acid phosphatase/chloroperoxidase%2C N-terminal (IPR016118);NIAS_FLcDNA=001-111-A01;Expression=AK063079;TENOR=Os09t0308900-02;KEGG=Os09t0308900-02
Chr09	irgsp1_rep	five_prime_UTR	8158194	8158346	.	-	.	Parent=Os09t0308900-02
Chr09	irgsp1_rep	five_prime_UTR	8154370	8154375	.	-	.	Parent=Os09t0308900-02
Chr09	irgsp1_rep	CDS	8154157	8154369	.	-	0	Parent=Os09t0308900-02
Chr09	irgsp1_rep	CDS	8153980	8154067	.	-	0	Parent=Os09t0308900-02
Chr09	irgsp1_rep	CDS	8153788	8153897	.	-	2	Parent=Os09t0308900-02
Chr09	irgsp1_rep	CDS	8153562	8153655	.	-	0	Parent=Os09t0308900-02
Chr09	irgsp1_rep	CDS	8152657	8152862	.	-	2	Parent=Os09t0308900-02
Chr09	irgsp1_rep	three_prime_UTR	8152621	8152656	.	-	.	Parent=Os09t0308900-02
Chr09	irgsp1_rep	mRNA	8151924	8153642	.	-	.	ID=Os09t0308900-03;Name=Os09t0308900-03;Locus_id=Os09g0308900;Note=Similar to lipid phosphate phosphatase 3.;Transcript_evidence=AK062084 (DDBJ%2C Best hit);ORF_evidence=NP_001152212.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824);InterPro=Phosphatidic acid phosphatase type 2/haloperoxidase (IPR000326),Phosphatidic acid phosphatase/chloroperoxidase%2C N-terminal (IPR016118);NIAS_FLcDNA=001-044-G02;Expression=AK062084;TENOR=Os09t0308900-03;KEGG=Os09t0308900-03
Chr09	irgsp1_rep	five_prime_UTR	8153641	8153642	.	-	.	Parent=Os09t0308900-03
Chr09	irgsp1_rep	CDS	8153562	8153640	.	-	0	Parent=Os09t0308900-03
Chr09	irgsp1_rep	CDS	8152674	8152862	.	-	2	Parent=Os09t0308900-03
Chr09	irgsp1_rep	CDS	8152504	8152563	.	-	2	Parent=Os09t0308900-03
Chr09	irgsp1_rep	CDS	8152248	8152417	.	-	2	Parent=Os09t0308900-03
Chr09	irgsp1_rep	three_prime_UTR	8151924	8152247	.	-	.	Parent=Os09t0308900-03
Chr09	irgsp1_rep	mRNA	8166016	8169041	.	-	.	ID=Os09t0309100-01;Name=Os09t0309100-01;Locus_id=Os09g0309100;Note=Zinc finger%2C SWIM-type domain containing protein.;Transcript_evidence=AK102522 (DDBJ%2C Best hit);ORF_evidence=NP_176256.2 (RefSeq);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C SWIM-type (IPR007527);NIAS_FLcDNA=J033095P15;Expression=AK102522;TENOR=Os09t0309100-01;KEGG=Os09t0309100-01
Chr09	irgsp1_rep	five_prime_UTR	8168850	8169041	.	-	.	Parent=Os09t0309100-01
Chr09	irgsp1_rep	CDS	8168557	8168849	.	-	0	Parent=Os09t0309100-01
Chr09	irgsp1_rep	CDS	8167772	8168423	.	-	1	Parent=Os09t0309100-01
Chr09	irgsp1_rep	CDS	8167444	8167643	.	-	0	Parent=Os09t0309100-01
Chr09	irgsp1_rep	CDS	8167096	8167340	.	-	1	Parent=Os09t0309100-01
Chr09	irgsp1_rep	CDS	8166209	8167008	.	-	2	Parent=Os09t0309100-01
Chr09	irgsp1_rep	three_prime_UTR	8166016	8166208	.	-	.	Parent=Os09t0309100-01
Chr09	irgsp1_rep	mRNA	8165989	8168162	.	-	.	ID=Os09t0309100-02;Name=Os09t0309100-02;Locus_id=Os09g0309100;Note=Similar to predicted protein.;Transcript_evidence=AK066095 (DDBJ%2C Best hit);ORF_evidence=NP_176256.2 (RefSeq);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C SWIM-type (IPR007527);NIAS_FLcDNA=J013058J01;Expression=AK066095;TENOR=Os09t0309100-02;KEGG=Os09t0309100-02
Chr09	irgsp1_rep	five_prime_UTR	8168162	8168162	.	-	.	Parent=Os09t0309100-02
Chr09	irgsp1_rep	CDS	8167772	8168161	.	-	0	Parent=Os09t0309100-02
Chr09	irgsp1_rep	CDS	8167444	8167643	.	-	0	Parent=Os09t0309100-02
Chr09	irgsp1_rep	CDS	8167096	8167340	.	-	1	Parent=Os09t0309100-02
Chr09	irgsp1_rep	CDS	8166209	8167008	.	-	2	Parent=Os09t0309100-02
Chr09	irgsp1_rep	three_prime_UTR	8165989	8166208	.	-	.	Parent=Os09t0309100-02
Chr09	irgsp1_rep	mRNA	8165989	8167610	.	-	.	ID=Os09t0309100-03;Name=Os09t0309100-03;Locus_id=Os09g0309100;Note=Similar to predicted protein.;Transcript_evidence=AK062033 (DDBJ%2C Best hit);ORF_evidence=NP_176256.2 (RefSeq);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C SWIM-type (IPR007527);NIAS_FLcDNA=001-043-H03;Expression=AK062033;TENOR=Os09t0309100-03;KEGG=Os09t0309100-03
Chr09	irgsp1_rep	CDS	8167444	8167610	.	-	0	Parent=Os09t0309100-03
Chr09	irgsp1_rep	CDS	8167096	8167340	.	-	1	Parent=Os09t0309100-03
Chr09	irgsp1_rep	CDS	8166209	8167008	.	-	2	Parent=Os09t0309100-03
Chr09	irgsp1_rep	three_prime_UTR	8165989	8166208	.	-	.	Parent=Os09t0309100-03
Chr09	irgsp1_rep	mRNA	8173211	8177505	.	+	.	ID=Os09t0309200-01;Name=Os09t0309200-01;Locus_id=Os09g0309200;Note=Calmodulin binding protein-like family protein.;Transcript_evidence=AK109582 (DDBJ%2C Best hit);ORF_evidence=Q69L43 (UniProt);InterPro=Calmodulin binding protein-like (IPR012416);NIAS_FLcDNA=002-137-A07;Expression=AK109582;TENOR=Os09t0309200-01;KEGG=Os09t0309200-01
Chr09	irgsp1_rep	five_prime_UTR	8173211	8173278	.	+	.	Parent=Os09t0309200-01
Chr09	irgsp1_rep	CDS	8173279	8173403	.	+	0	Parent=Os09t0309200-01
Chr09	irgsp1_rep	CDS	8173685	8173760	.	+	1	Parent=Os09t0309200-01
Chr09	irgsp1_rep	CDS	8174070	8174122	.	+	0	Parent=Os09t0309200-01
Chr09	irgsp1_rep	CDS	8175631	8176139	.	+	1	Parent=Os09t0309200-01
Chr09	irgsp1_rep	CDS	8176315	8176475	.	+	2	Parent=Os09t0309200-01
Chr09	irgsp1_rep	CDS	8176604	8176681	.	+	0	Parent=Os09t0309200-01
Chr09	irgsp1_rep	CDS	8176835	8176916	.	+	0	Parent=Os09t0309200-01
Chr09	irgsp1_rep	CDS	8177014	8177240	.	+	2	Parent=Os09t0309200-01
Chr09	irgsp1_rep	three_prime_UTR	8177241	8177505	.	+	.	Parent=Os09t0309200-01
Chr09	irgsp1_rep	mRNA	8194300	8195393	.	+	.	ID=Os09t0309500-01;Name=Os09t0309500-01;Locus_id=Os09g0309500;Note=Conserved hypothetical protein.;Transcript_evidence=AK243116 (DDBJ%2C Best hit);ORF_evidence=Q69N88 (UniProt);NIAS_FLcDNA=J100027L22;TENOR=Os09t0309500-01;KEGG=Os09t0309500-01
Chr09	irgsp1_rep	five_prime_UTR	8194300	8194423	.	+	.	Parent=Os09t0309500-01
Chr09	irgsp1_rep	CDS	8194424	8195113	.	+	0	Parent=Os09t0309500-01
Chr09	irgsp1_rep	three_prime_UTR	8195114	8195393	.	+	.	Parent=Os09t0309500-01
Chr09	irgsp1_rep	mRNA	8198943	8199729	.	+	.	ID=Os09t0309600-01;Name=Os09t0309600-01;Locus_id=Os09g0309600;Note=Conserved hypothetical protein.;Transcript_evidence=AK106857 (DDBJ%2C Best hit);ORF_evidence=A2YZP1 (UniProt);NIAS_FLcDNA=002-118-B10;Expression=AK106857;TENOR=Os09t0309600-01;KEGG=Os09t0309600-01
Chr09	irgsp1_rep	five_prime_UTR	8198943	8199026	.	+	.	Parent=Os09t0309600-01
Chr09	irgsp1_rep	CDS	8199027	8199506	.	+	0	Parent=Os09t0309600-01
Chr09	irgsp1_rep	three_prime_UTR	8199507	8199729	.	+	.	Parent=Os09t0309600-01
Chr09	irgsp1_rep	mRNA	8200014	8203350	.	-	.	ID=Os09t0309700-01;Name=Os09t0309700-01;Locus_id=Os09g0309700;RAP-DB Gene Symbol Synonym(s)=ERF109%2C OsERF109;RAP-DB Gene Name Synonym(s)=ETHYLENE RESPONSE FACTOR 109%2C ethylene response factor 109;CGSNL Gene Symbol=ERF109;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 109;Oryzabase Gene Symbol Synonym(s)=OsERF#109%2C OsERF109%2C AP2/EREBP#063%2C AP2/EREBP63%2C DLN223%2C OsDLN223;Oryzabase Gene Name Synonym(s)=ethylene response factor 109%2C APETALA2/ethylene-responsive element binding protein 63%2C DLN repressor 223%2C DLN motif protein 223;Note=Ethylene response factor%2C Transcription factor%2C Negative regulation of ethylene biosynthesis%2C Drought tolerance;Transcript_evidence=AK100575;ORF_evidence=Q0J2R6;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700);InterPro=DNA-binding domain (IPR016177),AP2/ERF domain (IPR001471);NIAS_FLcDNA=J023105G21;Manual Curation=June 19%2C 2017;Literature_PMID=27040682;Oryzabase=10605;Expression=AK100575;TENOR=Os09t0309700-01;KEGG=Os09t0309700-01;Subcellular location=nucleus (GO:0005634)
Chr09	irgsp1_rep	five_prime_UTR	8203096	8203350	.	-	.	Parent=Os09t0309700-01
Chr09	irgsp1_rep	five_prime_UTR	8202381	8202589	.	-	.	Parent=Os09t0309700-01
Chr09	irgsp1_rep	five_prime_UTR	8201831	8201915	.	-	.	Parent=Os09t0309700-01
Chr09	irgsp1_rep	five_prime_UTR	8201431	8201671	.	-	.	Parent=Os09t0309700-01
Chr09	irgsp1_rep	five_prime_UTR	8201283	8201343	.	-	.	Parent=Os09t0309700-01
Chr09	irgsp1_rep	CDS	8200326	8201282	.	-	0	Parent=Os09t0309700-01
Chr09	irgsp1_rep	three_prime_UTR	8200014	8200325	.	-	.	Parent=Os09t0309700-01
Chr09	irgsp1_rep	mRNA	8214796	8216500	.	+	.	ID=Os09t0309900-01;Name=Os09t0309900-01;Locus_id=Os09g0309900;Note=Similar to cDNA clone:J033099F01%2C full insert sequence.;Transcript_evidence=AK121830 (DDBJ%2C Best hit);ORF_evidence=B7ETE2 (UniProt);NIAS_FLcDNA=J033099I07;TENOR=Os09t0309900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	8214796	8215134	.	+	.	Parent=Os09t0309900-01
Chr09	irgsp1_rep	CDS	8215135	8215382	.	+	0	Parent=Os09t0309900-01
Chr09	irgsp1_rep	CDS	8215512	8215567	.	+	1	Parent=Os09t0309900-01
Chr09	irgsp1_rep	CDS	8215652	8215731	.	+	2	Parent=Os09t0309900-01
Chr09	irgsp1_rep	three_prime_UTR	8215732	8215770	.	+	.	Parent=Os09t0309900-01
Chr09	irgsp1_rep	three_prime_UTR	8216252	8216500	.	+	.	Parent=Os09t0309900-01
Chr09	irgsp1_rep	mRNA	8282691	8286160	.	-	.	ID=Os09t0310800-01;Name=Os09t0310800-01;Locus_id=Os09g0310800;Note=Similar to Glycosyl hydrolase family 9 protein%2C expressed.;Transcript_evidence=AK067555 (DDBJ%2C Best hit);ORF_evidence=Q2QSI0 (UniProt);NIAS_FLcDNA=J013111F17;Expression=AK067555;TENOR=Os09t0310800-01;KEGG=Os09t0310800-01
Chr09	irgsp1_rep	five_prime_UTR	8285447	8286160	.	-	.	Parent=Os09t0310800-01
Chr09	irgsp1_rep	five_prime_UTR	8283111	8285085	.	-	.	Parent=Os09t0310800-01
Chr09	irgsp1_rep	CDS	8282838	8283110	.	-	0	Parent=Os09t0310800-01
Chr09	irgsp1_rep	three_prime_UTR	8282691	8282837	.	-	.	Parent=Os09t0310800-01
Chr09	irgsp1_rep	mRNA	8348957	8354350	.	-	.	ID=Os09t0311600-01;Name=Os09t0311600-01;Locus_id=Os09g0311600;Note=Similar to NBS-LRR type resistance protein (Fragment).;Transcript_evidence=AK102321 (DDBJ%2C Best hit);ORF_evidence=Q69KE4 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: protein binding (GO:0005515),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),Leucine-rich repeat (IPR001611),NB-ARC (IPR002182);NIAS_FLcDNA=J033090I23;Expression=AK102321;TENOR=Os09t0311600-01;KEGG=Os09t0311600-01
Chr09	irgsp1_rep	five_prime_UTR	8354312	8354350	.	-	.	Parent=Os09t0311600-01
Chr09	irgsp1_rep	CDS	8354242	8354311	.	-	0	Parent=Os09t0311600-01
Chr09	irgsp1_rep	CDS	8349102	8352007	.	-	2	Parent=Os09t0311600-01
Chr09	irgsp1_rep	three_prime_UTR	8348957	8349101	.	-	.	Parent=Os09t0311600-01
Chr09	irgsp1_rep	mRNA	8510839	8516543	.	-	.	ID=Os09t0313500-01;Name=Os09t0313500-01;Locus_id=Os09g0313500;Note=NB-ARC domain containing protein.;Transcript_evidence=AK065687 (DDBJ%2C Best hit);ORF_evidence=A2YZP5 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182),ATPase%2C AAA+ type%2C core (IPR003593);NIAS_FLcDNA=J013039H12;Expression=AK065687;TENOR=Os09t0313500-01;KEGG=Os09t0313500-01
Chr09	irgsp1_rep	five_prime_UTR	8516456	8516543	.	-	.	Parent=Os09t0313500-01
Chr09	irgsp1_rep	CDS	8516129	8516455	.	-	0	Parent=Os09t0313500-01
Chr09	irgsp1_rep	CDS	8511145	8514105	.	-	0	Parent=Os09t0313500-01
Chr09	irgsp1_rep	three_prime_UTR	8510839	8511144	.	-	.	Parent=Os09t0313500-01
Chr09	irgsp1_rep	mRNA	8533820	8542200	.	-	.	ID=Os09t0313550-01;Name=Os09t0313550-01;Locus_id=Os09g0313550;Note=Hypothetical gene.;Transcript_evidence=AK240868 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065024G02;TENOR=Os09t0313550-01;KEGG=Os09t0313550-01
Chr09	irgsp1_rep	five_prime_UTR	8539353	8542200	.	-	.	Parent=Os09t0313550-01
Chr09	irgsp1_rep	CDS	8539050	8539352	.	-	0	Parent=Os09t0313550-01
Chr09	irgsp1_rep	three_prime_UTR	8538748	8539049	.	-	.	Parent=Os09t0313550-01
Chr09	irgsp1_rep	three_prime_UTR	8534581	8534911	.	-	.	Parent=Os09t0313550-01
Chr09	irgsp1_rep	three_prime_UTR	8533820	8534042	.	-	.	Parent=Os09t0313550-01
Chr09	irgsp1_rep	mRNA	8537185	8541654	.	+	.	ID=Os09t0313600-00;Name=Os09t0313600-00;Locus_id=Os09g0313600;Note=Disease resistance protein domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3BXB1 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: protein binding (GO:0005515),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),Leucine-rich repeat (IPR001611),NB-ARC (IPR002182),Leucine-rich repeat%2C typical subtype (IPR003591);TENOR=Os09t0313600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	8537185	8537409	.	+	0	Parent=Os09t0313600-00
Chr09	irgsp1_rep	CDS	8538748	8541654	.	+	0	Parent=Os09t0313600-00
Chr09	irgsp1_rep	mRNA	8568980	8572069	.	+	.	ID=Os09t0314200-00;Name=Os09t0314200-00;Locus_id=Os09g0314200;Note=Disease resistance protein domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8BE89 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os09t0314200-00
Chr09	irgsp1_rep	CDS	8568980	8572069	.	+	0	Parent=Os09t0314200-00
Chr09	irgsp1_rep	mRNA	8585972	8589925	.	+	.	ID=Os09t0314300-01;Name=Os09t0314300-01;Locus_id=Os09g0314300;Note=Similar to Lysine and histidine specific transporter.;Transcript_evidence=AK071933 (DDBJ%2C Best hit);ORF_evidence=B6TW18 (UniProt);GO=Biological Process: peroxisome organization (GO:0007031),Cellular Component: integral to peroxisomal membrane (GO:0005779);InterPro=Peroxin-3 (IPR006966);NIAS_FLcDNA=J013084C05;Expression=AK071933;TENOR=Os09t0314300-01;KEGG=Os09t0314300-01
Chr09	irgsp1_rep	five_prime_UTR	8585972	8586118	.	+	.	Parent=Os09t0314300-01
Chr09	irgsp1_rep	CDS	8586119	8586135	.	+	0	Parent=Os09t0314300-01
Chr09	irgsp1_rep	CDS	8586273	8586434	.	+	1	Parent=Os09t0314300-01
Chr09	irgsp1_rep	CDS	8587054	8587333	.	+	1	Parent=Os09t0314300-01
Chr09	irgsp1_rep	three_prime_UTR	8587334	8587493	.	+	.	Parent=Os09t0314300-01
Chr09	irgsp1_rep	three_prime_UTR	8587685	8587812	.	+	.	Parent=Os09t0314300-01
Chr09	irgsp1_rep	three_prime_UTR	8588380	8588619	.	+	.	Parent=Os09t0314300-01
Chr09	irgsp1_rep	three_prime_UTR	8589289	8589925	.	+	.	Parent=Os09t0314300-01
Chr09	irgsp1_rep	mRNA	8586038	8589948	.	+	.	ID=Os09t0314300-02;Name=Os09t0314300-02;Locus_id=Os09g0314300;Note=Peroxin-3 family protein.;Transcript_evidence=AK101689 (DDBJ%2C Best hit);ORF_evidence=B6TW18 (UniProt);GO=Biological Process: peroxisome organization (GO:0007031),Cellular Component: integral to peroxisomal membrane (GO:0005779);InterPro=Peroxin-3 (IPR006966);NIAS_FLcDNA=J033059H01;Expression=AK101689;TENOR=Os09t0314300-02;KEGG=Os09t0314300-02
Chr09	irgsp1_rep	five_prime_UTR	8586038	8586118	.	+	.	Parent=Os09t0314300-02
Chr09	irgsp1_rep	CDS	8586119	8586135	.	+	0	Parent=Os09t0314300-02
Chr09	irgsp1_rep	CDS	8586273	8586434	.	+	1	Parent=Os09t0314300-02
Chr09	irgsp1_rep	CDS	8587054	8587259	.	+	1	Parent=Os09t0314300-02
Chr09	irgsp1_rep	CDS	8587363	8587493	.	+	2	Parent=Os09t0314300-02
Chr09	irgsp1_rep	CDS	8587685	8587812	.	+	0	Parent=Os09t0314300-02
Chr09	irgsp1_rep	CDS	8588380	8588619	.	+	1	Parent=Os09t0314300-02
Chr09	irgsp1_rep	CDS	8589289	8589547	.	+	1	Parent=Os09t0314300-02
Chr09	irgsp1_rep	three_prime_UTR	8589548	8589948	.	+	.	Parent=Os09t0314300-02
Chr09	irgsp1_rep	mRNA	8590518	8592972	.	-	.	ID=Os09t0314333-00;Name=Os09t0314333-00;Locus_id=Os09g0314333;Note=UAA transporter family protein.;Transcript_evidence=CT836554 (DDBJ%2C Best hit);ORF_evidence=NP_197498.1 (RefSeq);InterPro=Domain of unknown function DUF250 (IPR004853);TENOR=Os09t0314333-00;KEGG=Os09t0314333-00
Chr09	irgsp1_rep	five_prime_UTR	8592849	8592972	.	-	.	Parent=Os09t0314333-00
Chr09	irgsp1_rep	five_prime_UTR	8591851	8591867	.	-	.	Parent=Os09t0314333-00
Chr09	irgsp1_rep	CDS	8590819	8591850	.	-	0	Parent=Os09t0314333-00
Chr09	irgsp1_rep	three_prime_UTR	8590518	8590818	.	-	.	Parent=Os09t0314333-00
Chr09	irgsp1_rep	mRNA	8603014	8609484	.	-	.	ID=Os09t0314400-01;Name=Os09t0314400-01;Locus_id=Os09g0314400;Oryzabase Gene Symbol Synonym(s)=OsPP2C67%2C PP2C67%2C OsPP107;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C67%2C protein phosphatase 2C 67%2C protein phosphatase 107;Note=Protein phosphatase 2C-like domain containing protein.;Transcript_evidence=AK064380 (DDBJ%2C Best hit);ORF_evidence=A3BXC3 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=002-108-D12;Oryzabase=17940;TENOR=Os09t0314400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	8609392	8609484	.	-	0	Parent=Os09t0314400-01
Chr09	irgsp1_rep	CDS	8608580	8609007	.	-	0	Parent=Os09t0314400-01
Chr09	irgsp1_rep	CDS	8608401	8608509	.	-	1	Parent=Os09t0314400-01
Chr09	irgsp1_rep	CDS	8608029	8608065	.	-	0	Parent=Os09t0314400-01
Chr09	irgsp1_rep	CDS	8606952	8606996	.	-	2	Parent=Os09t0314400-01
Chr09	irgsp1_rep	CDS	8605918	8605970	.	-	2	Parent=Os09t0314400-01
Chr09	irgsp1_rep	CDS	8605308	8605469	.	-	0	Parent=Os09t0314400-01
Chr09	irgsp1_rep	CDS	8604668	8604751	.	-	0	Parent=Os09t0314400-01
Chr09	irgsp1_rep	CDS	8604064	8604153	.	-	0	Parent=Os09t0314400-01
Chr09	irgsp1_rep	CDS	8603907	8603954	.	-	0	Parent=Os09t0314400-01
Chr09	irgsp1_rep	CDS	8603462	8603569	.	-	0	Parent=Os09t0314400-01
Chr09	irgsp1_rep	three_prime_UTR	8603014	8603461	.	-	.	Parent=Os09t0314400-01
Chr09	irgsp1_rep	mRNA	8613403	8618697	.	+	.	ID=Os09t0314500-01;Name=Os09t0314500-01;Locus_id=Os09g0314500;Note=Hypothetical conserved gene.;Transcript_evidence=AK318539 (DDBJ%2C Best hit);ORF_evidence=B9G2U1 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Ataxin-2%2C C-terminal (IPR009818),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J075018I01;TENOR=Os09t0314500-01;KEGG=Os09t0314500-01
Chr09	irgsp1_rep	five_prime_UTR	8613403	8613520	.	+	.	Parent=Os09t0314500-01
Chr09	irgsp1_rep	CDS	8613521	8613907	.	+	0	Parent=Os09t0314500-01
Chr09	irgsp1_rep	CDS	8615453	8615575	.	+	0	Parent=Os09t0314500-01
Chr09	irgsp1_rep	CDS	8615726	8615770	.	+	0	Parent=Os09t0314500-01
Chr09	irgsp1_rep	CDS	8616404	8616479	.	+	0	Parent=Os09t0314500-01
Chr09	irgsp1_rep	CDS	8616587	8616699	.	+	2	Parent=Os09t0314500-01
Chr09	irgsp1_rep	CDS	8616807	8616866	.	+	0	Parent=Os09t0314500-01
Chr09	irgsp1_rep	CDS	8616963	8617010	.	+	0	Parent=Os09t0314500-01
Chr09	irgsp1_rep	CDS	8617290	8617358	.	+	0	Parent=Os09t0314500-01
Chr09	irgsp1_rep	CDS	8618022	8618083	.	+	0	Parent=Os09t0314500-01
Chr09	irgsp1_rep	CDS	8618179	8618257	.	+	1	Parent=Os09t0314500-01
Chr09	irgsp1_rep	three_prime_UTR	8618258	8618697	.	+	.	Parent=Os09t0314500-01
Chr09	irgsp1_rep	mRNA	8630970	8632927	.	-	.	ID=Os09t0314800-00;Name=Os09t0314800-00;Locus_id=Os09g0314800;Note=Similar to Receptor protein kinase PERK1.;Transcript_evidence=AK361502 (DDBJ);ORF_evidence=B6SXS9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os09t0314800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	8632228	8632927	.	-	0	Parent=Os09t0314800-00
Chr09	irgsp1_rep	CDS	8631981	8632067	.	-	2	Parent=Os09t0314800-00
Chr09	irgsp1_rep	CDS	8631804	8631874	.	-	2	Parent=Os09t0314800-00
Chr09	irgsp1_rep	CDS	8631621	8631647	.	-	0	Parent=Os09t0314800-00
Chr09	irgsp1_rep	three_prime_UTR	8631543	8631620	.	-	.	Parent=Os09t0314800-00
Chr09	irgsp1_rep	three_prime_UTR	8631295	8631415	.	-	.	Parent=Os09t0314800-00
Chr09	irgsp1_rep	three_prime_UTR	8630970	8631148	.	-	.	Parent=Os09t0314800-00
Chr09	irgsp1_rep	mRNA	8636381	8639457	.	+	.	ID=Os09t0314900-00;Name=Os09t0314900-00;Locus_id=Os09g0314900;Note=Similar to Proteasome maturation factor UMP1 family protein.;Transcript_evidence=EU960073 (DDBJ);ORF_evidence=B4FLC7 (UniProt);InterPro=Proteasome maturation factor UMP1 (IPR008012);TENOR=Os09t0314900-00;KEGG=Os09t0314900-00
Chr09	irgsp1_rep	five_prime_UTR	8636381	8636423	.	+	.	Parent=Os09t0314900-00
Chr09	irgsp1_rep	CDS	8636424	8636549	.	+	0	Parent=Os09t0314900-00
Chr09	irgsp1_rep	CDS	8636641	8636741	.	+	0	Parent=Os09t0314900-00
Chr09	irgsp1_rep	CDS	8638517	8638614	.	+	1	Parent=Os09t0314900-00
Chr09	irgsp1_rep	CDS	8639278	8639378	.	+	2	Parent=Os09t0314900-00
Chr09	irgsp1_rep	three_prime_UTR	8639379	8639457	.	+	.	Parent=Os09t0314900-00
Chr09	irgsp1_rep	mRNA	8644115	8652428	.	+	.	ID=Os09t0315000-01;Name=Os09t0315000-01;Locus_id=Os09g0315000;Note=Similar to mpv17 / PMP22 family protein.;Transcript_evidence=AK287658 (DDBJ%2C Best hit);ORF_evidence=NP_001151402.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Mpv17/PMP22 (IPR007248);NIAS_FLcDNA=J065098C04;TENOR=Os09t0315000-01;KEGG=Os09t0315000-01
Chr09	irgsp1_rep	five_prime_UTR	8644115	8644116	.	+	.	Parent=Os09t0315000-01
Chr09	irgsp1_rep	CDS	8644117	8644632	.	+	0	Parent=Os09t0315000-01
Chr09	irgsp1_rep	CDS	8644772	8644879	.	+	0	Parent=Os09t0315000-01
Chr09	irgsp1_rep	CDS	8644977	8645090	.	+	0	Parent=Os09t0315000-01
Chr09	irgsp1_rep	CDS	8645187	8645325	.	+	0	Parent=Os09t0315000-01
Chr09	irgsp1_rep	CDS	8645896	8645954	.	+	2	Parent=Os09t0315000-01
Chr09	irgsp1_rep	three_prime_UTR	8645955	8646011	.	+	.	Parent=Os09t0315000-01
Chr09	irgsp1_rep	three_prime_UTR	8646127	8646190	.	+	.	Parent=Os09t0315000-01
Chr09	irgsp1_rep	three_prime_UTR	8646276	8646296	.	+	.	Parent=Os09t0315000-01
Chr09	irgsp1_rep	three_prime_UTR	8647149	8647497	.	+	.	Parent=Os09t0315000-01
Chr09	irgsp1_rep	three_prime_UTR	8652100	8652428	.	+	.	Parent=Os09t0315000-01
Chr09	irgsp1_rep	mRNA	8647061	8647995	.	-	.	ID=Os09t0315050-00;Name=Os09t0315050-00;Locus_id=Os09g0315050;Note=Similar to Endoribonuclease Dicer homolog 2b.;Transcript_evidence=ab initio prediction;ORF_evidence=Q69LX2 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Cellular Component: intracellular (GO:0005622),Molecular Function: RNA binding (GO:0003723),Molecular Function: double-stranded RNA binding (GO:0003725),Molecular Function: ribonuclease III activity (GO:0004525);InterPro=Ribonuclease III (IPR000999),Double-stranded RNA-binding (IPR001159);TENOR=Os09t0315050-00;KEGG=Os09t0315050-00 (EC:3.1.26.-)
Chr09	irgsp1_rep	CDS	8647924	8647995	.	-	0	Parent=Os09t0315050-00
Chr09	irgsp1_rep	CDS	8647061	8647420	.	-	0	Parent=Os09t0315050-00
Chr09	irgsp1_rep	mRNA	8648134	8652037	.	-	.	ID=Os09t0315100-01;Name=Os09t0315100-01;Locus_id=Os09g0315100;CGSNL Gene Symbol=DCL2B;CGSNL Gene Name=DICER-LIKE 2B;Oryzabase Gene Symbol Synonym(s)=OsDCL2b;Oryzabase Gene Name Synonym(s)=Endoribonuclease Dicer homolog 2b%2C Dicer-like protein 2b;Note=Similar to Endoribonuclease Dicer homolog 2b.;Transcript_evidence=AK069081 (DDBJ%2C Best hit);ORF_evidence=Q69LX2 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Molecular Function: RNA binding (GO:0003723),Molecular Function: ribonuclease III activity (GO:0004525);InterPro=Ribonuclease III (IPR000999);NIAS_FLcDNA=J023006B19;Oryzabase=8308;Expression=AK069081;TENOR=Os09t0315100-01;KEGG=Os09t0315100-01
Chr09	irgsp1_rep	five_prime_UTR	8651303	8652037	.	-	.	Parent=Os09t0315100-01
Chr09	irgsp1_rep	CDS	8651033	8651302	.	-	0	Parent=Os09t0315100-01
Chr09	irgsp1_rep	three_prime_UTR	8649740	8651032	.	-	.	Parent=Os09t0315100-01
Chr09	irgsp1_rep	three_prime_UTR	8648134	8648193	.	-	.	Parent=Os09t0315100-01
Chr09	irgsp1_rep	mRNA	8665902	8667873	.	-	.	ID=Os09t0315200-01;Name=Os09t0315200-01;Locus_id=Os09g0315200;Note=Conserved hypothetical protein.;Transcript_evidence=AK105900 (DDBJ%2C Best hit);ORF_evidence=B8AL71 (UniProt);NIAS_FLcDNA=001-204-F08;Expression=AK105900;TENOR=Os09t0315200-01;KEGG=Os09t0315200-01
Chr09	irgsp1_rep	five_prime_UTR	8667747	8667873	.	-	.	Parent=Os09t0315200-01
Chr09	irgsp1_rep	CDS	8666659	8667746	.	-	0	Parent=Os09t0315200-01
Chr09	irgsp1_rep	CDS	8665995	8666085	.	-	1	Parent=Os09t0315200-01
Chr09	irgsp1_rep	three_prime_UTR	8665902	8665994	.	-	.	Parent=Os09t0315200-01
Chr09	irgsp1_rep	mRNA	8692296	8697399	.	-	.	ID=Os09t0315700-01;Name=Os09t0315700-01;Locus_id=Os09g0315700;RAP-DB Gene Symbol Synonym(s)=Osppc2b;RAP-DB Gene Name Synonym(s)=Phosphoenolpyruvate carboxylase 2b;Oryzabase Gene Symbol Synonym(s)=Osppc2b%2C ppc2b;Oryzabase Gene Name Synonym(s)=phosphoenolpyruvate carboxylase 2b%2C PEPCase 2b;Note=Phosphoenolpyruvate carboxylase;Transcript_evidence=AK240668,AK242583;ORF_evidence=A0A0P0XLG1;GO=Biological Process: tricarboxylic acid cycle (GO:0006099),Biological Process: carbon fixation (GO:0015977),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphoenolpyruvate carboxylase activity (GO:0008964);InterPro=Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily (IPR015813),Phosphoenolpyruvate carboxylase (IPR021135),Phosphoenolpyruvate carboxylase%2C bacterial/plant-type (IPR022805),Phosphoenolpyruvate carboxylase%2C Lys active site (IPR018129),Phosphoenolpyruvate carboxylase%2C His active site (IPR033129);NIAS_FLcDNA=J033066E20,J090010K11;Manual Curation=October 7%2C 2020;Literature_PMID=25505033,20194759;Oryzabase=18344;TENOR=Os09t0315700-01;KEGG=Os09t0315700-01 (EC:4.1.1.31)
Chr09	irgsp1_rep	five_prime_UTR	8697349	8697399	.	-	.	Parent=Os09t0315700-01
Chr09	irgsp1_rep	CDS	8697151	8697348	.	-	0	Parent=Os09t0315700-01
Chr09	irgsp1_rep	CDS	8695895	8696286	.	-	0	Parent=Os09t0315700-01
Chr09	irgsp1_rep	CDS	8695725	8695809	.	-	1	Parent=Os09t0315700-01
Chr09	irgsp1_rep	CDS	8695388	8695610	.	-	0	Parent=Os09t0315700-01
Chr09	irgsp1_rep	CDS	8695130	8695233	.	-	2	Parent=Os09t0315700-01
Chr09	irgsp1_rep	CDS	8694957	8695044	.	-	0	Parent=Os09t0315700-01
Chr09	irgsp1_rep	CDS	8694690	8694844	.	-	2	Parent=Os09t0315700-01
Chr09	irgsp1_rep	CDS	8693604	8694602	.	-	0	Parent=Os09t0315700-01
Chr09	irgsp1_rep	CDS	8692906	8693292	.	-	0	Parent=Os09t0315700-01
Chr09	irgsp1_rep	CDS	8692487	8692783	.	-	0	Parent=Os09t0315700-01
Chr09	irgsp1_rep	three_prime_UTR	8692296	8692486	.	-	.	Parent=Os09t0315700-01
Chr09	irgsp1_rep	mRNA	8692486	8697296	.	+	.	ID=Os09t0315750-00;Name=Os09t0315750-00;Locus_id=Os09g0315750;Note=Hypothetical protein.;Transcript_evidence=tplb0046d07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0315750-00
Chr09	irgsp1_rep	five_prime_UTR	8692486	8692788	.	+	.	Parent=Os09t0315750-00
Chr09	irgsp1_rep	five_prime_UTR	8692912	8693285	.	+	.	Parent=Os09t0315750-00
Chr09	irgsp1_rep	five_prime_UTR	8693597	8694622	.	+	.	Parent=Os09t0315750-00
Chr09	irgsp1_rep	five_prime_UTR	8694710	8694844	.	+	.	Parent=Os09t0315750-00
Chr09	irgsp1_rep	five_prime_UTR	8694957	8695023	.	+	.	Parent=Os09t0315750-00
Chr09	irgsp1_rep	five_prime_UTR	8695114	8695217	.	+	.	Parent=Os09t0315750-00
Chr09	irgsp1_rep	five_prime_UTR	8695375	8695610	.	+	.	Parent=Os09t0315750-00
Chr09	irgsp1_rep	five_prime_UTR	8695725	8695815	.	+	.	Parent=Os09t0315750-00
Chr09	irgsp1_rep	five_prime_UTR	8695901	8695938	.	+	.	Parent=Os09t0315750-00
Chr09	irgsp1_rep	CDS	8695939	8696293	.	+	0	Parent=Os09t0315750-00
Chr09	irgsp1_rep	CDS	8697163	8697230	.	+	2	Parent=Os09t0315750-00
Chr09	irgsp1_rep	three_prime_UTR	8697231	8697296	.	+	.	Parent=Os09t0315750-00
Chr09	irgsp1_rep	mRNA	8710181	8716892	.	-	.	ID=Os09t0315800-01;Name=Os09t0315800-01;Locus_id=Os09g0315800;Note=Phosphotransferase system%2C HPr serine phosphorylation site domain containing protein.;Transcript_evidence=AK121947 (DDBJ%2C Best hit);ORF_evidence=B8BE93 (UniProt);NIAS_FLcDNA=J033107G09;Expression=AK121947;TENOR=Os09t0315800-01;KEGG=Os09t0315800-01
Chr09	irgsp1_rep	five_prime_UTR	8716741	8716892	.	-	.	Parent=Os09t0315800-01
Chr09	irgsp1_rep	CDS	8716348	8716740	.	-	0	Parent=Os09t0315800-01
Chr09	irgsp1_rep	CDS	8715444	8715578	.	-	0	Parent=Os09t0315800-01
Chr09	irgsp1_rep	CDS	8713771	8713959	.	-	0	Parent=Os09t0315800-01
Chr09	irgsp1_rep	CDS	8713515	8713576	.	-	0	Parent=Os09t0315800-01
Chr09	irgsp1_rep	CDS	8713019	8713176	.	-	1	Parent=Os09t0315800-01
Chr09	irgsp1_rep	CDS	8712797	8712945	.	-	2	Parent=Os09t0315800-01
Chr09	irgsp1_rep	CDS	8710658	8710798	.	-	0	Parent=Os09t0315800-01
Chr09	irgsp1_rep	CDS	8710325	8710507	.	-	0	Parent=Os09t0315800-01
Chr09	irgsp1_rep	three_prime_UTR	8710181	8710324	.	-	.	Parent=Os09t0315800-01
Chr09	irgsp1_rep	mRNA	8710149	8716835	.	-	.	ID=Os09t0315800-02;Name=Os09t0315800-02;Locus_id=Os09g0315800;Note=Phosphotransferase system%2C HPr serine phosphorylation site domain containing protein.;Transcript_evidence=AK106551 (DDBJ%2C Best hit);ORF_evidence=B8BE93 (UniProt);NIAS_FLcDNA=002-108-G05;Expression=AK106551;TENOR=Os09t0315800-02;KEGG=Os09t0315800-02
Chr09	irgsp1_rep	five_prime_UTR	8716741	8716835	.	-	.	Parent=Os09t0315800-02
Chr09	irgsp1_rep	CDS	8716348	8716740	.	-	0	Parent=Os09t0315800-02
Chr09	irgsp1_rep	CDS	8715444	8715578	.	-	0	Parent=Os09t0315800-02
Chr09	irgsp1_rep	CDS	8713771	8713959	.	-	0	Parent=Os09t0315800-02
Chr09	irgsp1_rep	CDS	8713515	8713576	.	-	0	Parent=Os09t0315800-02
Chr09	irgsp1_rep	CDS	8713019	8713176	.	-	1	Parent=Os09t0315800-02
Chr09	irgsp1_rep	CDS	8712797	8712945	.	-	2	Parent=Os09t0315800-02
Chr09	irgsp1_rep	CDS	8710658	8710798	.	-	0	Parent=Os09t0315800-02
Chr09	irgsp1_rep	CDS	8710325	8710507	.	-	0	Parent=Os09t0315800-02
Chr09	irgsp1_rep	three_prime_UTR	8710149	8710324	.	-	.	Parent=Os09t0315800-02
Chr09	irgsp1_rep	mRNA	8726763	8729678	.	-	.	ID=Os09t0316000-01;Name=Os09t0316000-01;Locus_id=Os09g0316000;Note=Similar to cupin%2C RmlC-type.;Transcript_evidence=AK243025 (DDBJ%2C Best hit);ORF_evidence=NP_001149919.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: cysteamine dioxygenase activity (GO:0047800);InterPro=Cupin%2C RmlC-type (IPR011051),Cysteamine dioxygenase (IPR012864),RmlC-like jelly roll fold (IPR014710);NIAS_FLcDNA=J100002B09;TENOR=Os09t0316000-01;KEGG=Os09t0316000-01 (EC:1.13.11.19)
Chr09	irgsp1_rep	five_prime_UTR	8729614	8729678	.	-	.	Parent=Os09t0316000-01
Chr09	irgsp1_rep	five_prime_UTR	8728936	8729041	.	-	.	Parent=Os09t0316000-01
Chr09	irgsp1_rep	CDS	8728836	8728935	.	-	0	Parent=Os09t0316000-01
Chr09	irgsp1_rep	CDS	8728147	8728298	.	-	2	Parent=Os09t0316000-01
Chr09	irgsp1_rep	CDS	8727807	8727957	.	-	0	Parent=Os09t0316000-01
Chr09	irgsp1_rep	CDS	8727251	8727454	.	-	2	Parent=Os09t0316000-01
Chr09	irgsp1_rep	CDS	8727044	8727159	.	-	2	Parent=Os09t0316000-01
Chr09	irgsp1_rep	three_prime_UTR	8726763	8727043	.	-	.	Parent=Os09t0316000-01
Chr09	irgsp1_rep	mRNA	8760358	8765652	.	-	.	ID=Os09t0316400-01;Name=Os09t0316400-01;Locus_id=Os09g0316400;Note=Conserved hypothetical protein.;Transcript_evidence=AK289010 (DDBJ%2C Best hit);ORF_evidence=Q75LF4 (UniProt);NIAS_FLcDNA=J090089F21;TENOR=Os09t0316400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	8764179	8765652	.	-	.	Parent=Os09t0316400-01
Chr09	irgsp1_rep	CDS	8764062	8764178	.	-	0	Parent=Os09t0316400-01
Chr09	irgsp1_rep	three_prime_UTR	8760358	8764061	.	-	.	Parent=Os09t0316400-01
Chr09	irgsp1_rep	mRNA	8879454	8883845	.	-	.	ID=Os09t0317700-01;Name=Os09t0317700-01;Locus_id=Os09g0317700;Note=Homeodomain-like containing protein.;Transcript_evidence=AK101117 (DDBJ%2C Best hit);ORF_evidence=A2YZR4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-related (IPR012287),MYB-like (IPR017877);NIAS_FLcDNA=J033025H14;Expression=AK101117;TENOR=Os09t0317700-01;KEGG=Os09t0317700-01
Chr09	irgsp1_rep	five_prime_UTR	8883627	8883845	.	-	.	Parent=Os09t0317700-01
Chr09	irgsp1_rep	five_prime_UTR	8883444	8883490	.	-	.	Parent=Os09t0317700-01
Chr09	irgsp1_rep	five_prime_UTR	8881334	8881540	.	-	.	Parent=Os09t0317700-01
Chr09	irgsp1_rep	CDS	8880926	8881333	.	-	0	Parent=Os09t0317700-01
Chr09	irgsp1_rep	CDS	8879764	8880843	.	-	0	Parent=Os09t0317700-01
Chr09	irgsp1_rep	three_prime_UTR	8879454	8879763	.	-	.	Parent=Os09t0317700-01
Chr09	irgsp1_rep	mRNA	8969316	8973855	.	-	.	ID=Os09t0318600-01;Name=Os09t0318600-01;Locus_id=Os09g0318600;Note=Homeodomain-like containing protein.;Transcript_evidence=AK101412 (DDBJ%2C Best hit);ORF_evidence=A2YZR7 (UniProt);NIAS_FLcDNA=J033037J10;Expression=AK101412;TENOR=Os09t0318600-01;KEGG=Os09t0318600-01
Chr09	irgsp1_rep	five_prime_UTR	8973562	8973855	.	-	.	Parent=Os09t0318600-01
Chr09	irgsp1_rep	five_prime_UTR	8973392	8973465	.	-	.	Parent=Os09t0318600-01
Chr09	irgsp1_rep	five_prime_UTR	8971460	8971749	.	-	.	Parent=Os09t0318600-01
Chr09	irgsp1_rep	CDS	8971052	8971459	.	-	0	Parent=Os09t0318600-01
Chr09	irgsp1_rep	CDS	8969793	8970968	.	-	0	Parent=Os09t0318600-01
Chr09	irgsp1_rep	three_prime_UTR	8969316	8969792	.	-	.	Parent=Os09t0318600-01
Chr09	irgsp1_rep	mRNA	9087464	9088385	.	-	.	ID=Os09t0319701-01;Name=Os09t0319701-01;Locus_id=Os09g0319701;Note=Conserved hypothetical protein.;Transcript_evidence=AK241118 (DDBJ%2C Best hit);ORF_evidence=NP_001175767.1 (RefSeq);NIAS_FLcDNA=J065093P03;TENOR=Os09t0319701-01;KEGG=Os09t0319701-01
Chr09	irgsp1_rep	five_prime_UTR	9087849	9088385	.	-	.	Parent=Os09t0319701-01
Chr09	irgsp1_rep	CDS	9087627	9087848	.	-	0	Parent=Os09t0319701-01
Chr09	irgsp1_rep	three_prime_UTR	9087464	9087626	.	-	.	Parent=Os09t0319701-01
Chr09	irgsp1_rep	mRNA	9096555	9101312	.	+	.	ID=Os09t0319800-01;Name=Os09t0319800-01;Locus_id=Os09g0319800;CGSNL Gene Symbol=CPS3;CGSNL Gene Name=ENT-COPALYL DIPHOSPHATE 3;Oryzabase Gene Symbol Synonym(s)=OsCPS3;Oryzabase Gene Name Synonym(s)=rice ent-copalyl diphosphate (CDP) synthase3%2C ent-copalyl diphosphate (CDP) synthase 3%2C ent-copalyl diphosphate synthase 3;Note=Terpene synthase-like domain containing protein.;Transcript_evidence=AK066759 (DDBJ%2C Best hit);ORF_evidence=Q0JF02-2 (UniProt);InterPro=Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930);NIAS_FLcDNA=J013077H13;Oryzabase=3129;Expression=AK066759;TENOR=Os09t0319800-01;KEGG=Os09t0319800-01
Chr09	irgsp1_rep	five_prime_UTR	9096555	9096591	.	+	.	Parent=Os09t0319800-01
Chr09	irgsp1_rep	CDS	9096592	9096718	.	+	0	Parent=Os09t0319800-01
Chr09	irgsp1_rep	CDS	9099676	9099755	.	+	2	Parent=Os09t0319800-01
Chr09	irgsp1_rep	CDS	9100222	9100522	.	+	0	Parent=Os09t0319800-01
Chr09	irgsp1_rep	CDS	9100640	9100823	.	+	2	Parent=Os09t0319800-01
Chr09	irgsp1_rep	CDS	9100922	9101144	.	+	1	Parent=Os09t0319800-01
Chr09	irgsp1_rep	three_prime_UTR	9101145	9101312	.	+	.	Parent=Os09t0319800-01
Chr09	irgsp1_rep	mRNA	9207264	9211576	.	-	.	ID=Os09t0320201-00;Name=Os09t0320201-00;Locus_id=Os09g0320201;Note=Hypothetical protein.;Transcript_evidence=tplb0035n15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0320201-00
Chr09	irgsp1_rep	five_prime_UTR	9211576	9211576	.	-	.	Parent=Os09t0320201-00
Chr09	irgsp1_rep	CDS	9211195	9211575	.	-	0	Parent=Os09t0320201-00
Chr09	irgsp1_rep	CDS	9210798	9210818	.	-	0	Parent=Os09t0320201-00
Chr09	irgsp1_rep	three_prime_UTR	9210631	9210797	.	-	.	Parent=Os09t0320201-00
Chr09	irgsp1_rep	three_prime_UTR	9210479	9210536	.	-	.	Parent=Os09t0320201-00
Chr09	irgsp1_rep	three_prime_UTR	9210267	9210404	.	-	.	Parent=Os09t0320201-00
Chr09	irgsp1_rep	three_prime_UTR	9209902	9209992	.	-	.	Parent=Os09t0320201-00
Chr09	irgsp1_rep	three_prime_UTR	9209714	9209824	.	-	.	Parent=Os09t0320201-00
Chr09	irgsp1_rep	three_prime_UTR	9209382	9209626	.	-	.	Parent=Os09t0320201-00
Chr09	irgsp1_rep	three_prime_UTR	9208514	9208593	.	-	.	Parent=Os09t0320201-00
Chr09	irgsp1_rep	three_prime_UTR	9208015	9208107	.	-	.	Parent=Os09t0320201-00
Chr09	irgsp1_rep	three_prime_UTR	9207721	9207896	.	-	.	Parent=Os09t0320201-00
Chr09	irgsp1_rep	three_prime_UTR	9207469	9207567	.	-	.	Parent=Os09t0320201-00
Chr09	irgsp1_rep	three_prime_UTR	9207264	9207369	.	-	.	Parent=Os09t0320201-00
Chr09	irgsp1_rep	mRNA	9209367	9211683	.	+	.	ID=Os09t0320400-01;Name=Os09t0320400-01;Locus_id=Os09g0320400;Note=Similar to Permease.;Transcript_evidence=AK242891 (DDBJ%2C Best hit);ORF_evidence=B6U234 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Xanthine/uracil/vitamin C permease (IPR006043);NIAS_FLcDNA=J090080E05;TENOR=Os09t0320400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	9209367	9209367	.	+	.	Parent=Os09t0320400-01
Chr09	irgsp1_rep	CDS	9209368	9209661	.	+	0	Parent=Os09t0320400-01
Chr09	irgsp1_rep	three_prime_UTR	9209662	9209820	.	+	.	Parent=Os09t0320400-01
Chr09	irgsp1_rep	three_prime_UTR	9209897	9211683	.	+	.	Parent=Os09t0320400-01
Chr09	irgsp1_rep	mRNA	9245915	9246868	.	+	.	ID=Os09t0321000-01;Name=Os09t0321000-01;Locus_id=Os09g0321000;Note=Conserved hypothetical protein.;Transcript_evidence=AK110666 (DDBJ%2C Best hit);ORF_evidence=Q2R348 (UniProt);NIAS_FLcDNA=002-169-F08;Expression=AK110666;TENOR=Os09t0321000-01;KEGG=Os09t0321000-01
Chr09	irgsp1_rep	five_prime_UTR	9245915	9246009	.	+	.	Parent=Os09t0321000-01
Chr09	irgsp1_rep	CDS	9246010	9246253	.	+	0	Parent=Os09t0321000-01
Chr09	irgsp1_rep	CDS	9246327	9246445	.	+	2	Parent=Os09t0321000-01
Chr09	irgsp1_rep	three_prime_UTR	9246446	9246868	.	+	.	Parent=Os09t0321000-01
Chr09	irgsp1_rep	mRNA	9248976	9249042	.	+	.	ID=Os09t0321150-00;Name=Os09t0321150-00;Locus_id=Os09g0321150;Note=Non-protein coding transcript.;Transcript_evidence=EU943375 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0321150-00
Chr09	irgsp1_rep	exon	9248976	9249042	.	+	.	Parent=Os09t0321150-00
Chr09	irgsp1_rep	mRNA	9251224	9255066	.	-	.	ID=Os09t0321200-00;Name=Os09t0321200-00;Locus_id=Os09g0321200;Note=Similar to carotenoid cleavage dioxygenase.;Transcript_evidence=AK368381 (DDBJ);ORF_evidence=NP_001152477.1 (RefSeq);InterPro=Carotenoid oxygenase (IPR004294);TENOR=Os09t0321200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	9255029	9255066	.	-	.	Parent=Os09t0321200-00
Chr09	irgsp1_rep	CDS	9254918	9255028	.	-	0	Parent=Os09t0321200-00
Chr09	irgsp1_rep	CDS	9254664	9254810	.	-	0	Parent=Os09t0321200-00
Chr09	irgsp1_rep	CDS	9254483	9254585	.	-	0	Parent=Os09t0321200-00
Chr09	irgsp1_rep	CDS	9254112	9254371	.	-	2	Parent=Os09t0321200-00
Chr09	irgsp1_rep	CDS	9253847	9254026	.	-	0	Parent=Os09t0321200-00
Chr09	irgsp1_rep	CDS	9252930	9253008	.	-	0	Parent=Os09t0321200-00
Chr09	irgsp1_rep	CDS	9252756	9252837	.	-	2	Parent=Os09t0321200-00
Chr09	irgsp1_rep	CDS	9252556	9252618	.	-	1	Parent=Os09t0321200-00
Chr09	irgsp1_rep	CDS	9252333	9252471	.	-	1	Parent=Os09t0321200-00
Chr09	irgsp1_rep	CDS	9251880	9252192	.	-	0	Parent=Os09t0321200-00
Chr09	irgsp1_rep	CDS	9251682	9251746	.	-	2	Parent=Os09t0321200-00
Chr09	irgsp1_rep	CDS	9251441	9251597	.	-	0	Parent=Os09t0321200-00
Chr09	irgsp1_rep	CDS	9251323	9251336	.	-	2	Parent=Os09t0321200-00
Chr09	irgsp1_rep	three_prime_UTR	9251224	9251322	.	-	.	Parent=Os09t0321200-00
Chr09	irgsp1_rep	mRNA	9320005	9322013	.	-	.	ID=Os09t0321500-01;Name=Os09t0321500-01;Locus_id=Os09g0321500;Note=Hypothetical conserved gene.;Transcript_evidence=AK062743 (DDBJ%2C Best hit);ORF_evidence=NP_001068061.1 (RefSeq);NIAS_FLcDNA=001-106-F05;Expression=AK062743;TENOR=Os09t0321500-01;KEGG=Os09t0321500-01
Chr09	irgsp1_rep	five_prime_UTR	9321680	9322013	.	-	.	Parent=Os09t0321500-01
Chr09	irgsp1_rep	CDS	9321637	9321679	.	-	0	Parent=Os09t0321500-01
Chr09	irgsp1_rep	CDS	9320382	9320491	.	-	2	Parent=Os09t0321500-01
Chr09	irgsp1_rep	three_prime_UTR	9320005	9320381	.	-	.	Parent=Os09t0321500-01
Chr09	irgsp1_rep	mRNA	9357985	9362379	.	+	.	ID=Os09t0321900-01;Name=Os09t0321900-01;Locus_id=Os09g0321900;CGSNL Gene Symbol=UBC6;CGSNL Gene Name=UBIQUITIN-CONJUGATING ENZYME 6;Oryzabase Gene Symbol Synonym(s)=OsUBC6;Oryzabase Gene Name Synonym(s)=Ubiquitin-conjugating enzyme 6;Note=Similar to Ubiquitin-conjugating enzyme E2 M (EC 6.3.2.19) (Ubiquitin-protein ligase M) (Ubiquitin carrier protein M) (Nedd8-conjugating enzyme Ubc12).;Transcript_evidence=AK073821 (DDBJ%2C Best hit);ORF_evidence=B8BEJ0 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135),Ubiquitin-conjugating enzyme%2C active site (IPR023313);NIAS_FLcDNA=J033069E18;Oryzabase=19554;Expression=AK073821;TENOR=Os09t0321900-01;KEGG=Os09t0321900-01 (EC:6.3.2.19)
Chr09	irgsp1_rep	five_prime_UTR	9357985	9358123	.	+	.	Parent=Os09t0321900-01
Chr09	irgsp1_rep	CDS	9359713	9359821	.	+	0	Parent=Os09t0321900-01
Chr09	irgsp1_rep	CDS	9360685	9360793	.	+	2	Parent=Os09t0321900-01
Chr09	irgsp1_rep	CDS	9361389	9361467	.	+	1	Parent=Os09t0321900-01
Chr09	irgsp1_rep	CDS	9361657	9361773	.	+	0	Parent=Os09t0321900-01
Chr09	irgsp1_rep	CDS	9362036	9362173	.	+	0	Parent=Os09t0321900-01
Chr09	irgsp1_rep	three_prime_UTR	9362174	9362379	.	+	.	Parent=Os09t0321900-01
Chr09	irgsp1_rep	mRNA	9366388	9370327	.	-	.	ID=Os09t0322000-01;Name=Os09t0322000-01;Locus_id=Os09g0322000;Note=Similar to PaMst-1.;Transcript_evidence=AK067346 (DDBJ%2C Best hit);ORF_evidence=NP_001148989.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J013106G10;Expression=AK067346;TENOR=Os09t0322000-01;KEGG=Os09t0322000-01
Chr09	irgsp1_rep	five_prime_UTR	9370137	9370327	.	-	.	Parent=Os09t0322000-01
Chr09	irgsp1_rep	five_prime_UTR	9369874	9370007	.	-	.	Parent=Os09t0322000-01
Chr09	irgsp1_rep	CDS	9369726	9369873	.	-	0	Parent=Os09t0322000-01
Chr09	irgsp1_rep	CDS	9367198	9368150	.	-	2	Parent=Os09t0322000-01
Chr09	irgsp1_rep	CDS	9366619	9367110	.	-	0	Parent=Os09t0322000-01
Chr09	irgsp1_rep	three_prime_UTR	9366388	9366618	.	-	.	Parent=Os09t0322000-01
Chr09	irgsp1_rep	mRNA	9366327	9367945	.	-	.	ID=Os09t0322000-02;Name=Os09t0322000-02;Locus_id=Os09g0322000;Note=Similar to sugar transport protein 14.;Transcript_evidence=AK063975 (DDBJ%2C Best hit);ORF_evidence=NP_001148989.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=001-124-B10;Expression=AK063975;TENOR=Os09t0322000-02;KEGG=Os09t0322000-02
Chr09	irgsp1_rep	five_prime_UTR	9367945	9367945	.	-	.	Parent=Os09t0322000-02
Chr09	irgsp1_rep	CDS	9367198	9367944	.	-	0	Parent=Os09t0322000-02
Chr09	irgsp1_rep	CDS	9366619	9367110	.	-	0	Parent=Os09t0322000-02
Chr09	irgsp1_rep	three_prime_UTR	9366327	9366618	.	-	.	Parent=Os09t0322000-02
Chr09	irgsp1_rep	mRNA	9366388	9367759	.	-	.	ID=Os09t0322000-03;Name=Os09t0322000-03;Locus_id=Os09g0322000;Note=Similar to sugar transport protein 14.;Transcript_evidence=AK102510 (DDBJ%2C Best hit);ORF_evidence=NP_001148989.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J033095G20;Expression=AK102510;TENOR=Os09t0322000-03;KEGG=Os09t0322000-03
Chr09	irgsp1_rep	five_prime_UTR	9367759	9367759	.	-	.	Parent=Os09t0322000-03
Chr09	irgsp1_rep	CDS	9367198	9367758	.	-	0	Parent=Os09t0322000-03
Chr09	irgsp1_rep	CDS	9366619	9367110	.	-	0	Parent=Os09t0322000-03
Chr09	irgsp1_rep	three_prime_UTR	9366388	9366618	.	-	.	Parent=Os09t0322000-03
Chr09	irgsp1_rep	mRNA	9366605	9368602	.	+	.	ID=Os09t0322100-01;Name=Os09t0322100-01;Locus_id=Os09g0322100;Note=Hypothetical protein.;Transcript_evidence=AK107018 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-120-H05;TENOR=Os09t0322100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	9366605	9366606	.	+	.	Parent=Os09t0322100-01
Chr09	irgsp1_rep	CDS	9366607	9367062	.	+	0	Parent=Os09t0322100-01
Chr09	irgsp1_rep	three_prime_UTR	9367063	9368602	.	+	.	Parent=Os09t0322100-01
Chr09	irgsp1_rep	mRNA	9379558	9383831	.	-	.	ID=Os09t0322200-01;Name=Os09t0322200-01;Locus_id=Os09g0322200;Note=Similar to Nudix hydrolase 24.;Transcript_evidence=AK067539 (DDBJ%2C Best hit);ORF_evidence=B6TUU0 (UniProt);NIAS_FLcDNA=J013110E07;TENOR=Os09t0322200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	9383767	9383831	.	-	.	Parent=Os09t0322200-01
Chr09	irgsp1_rep	CDS	9383506	9383766	.	-	0	Parent=Os09t0322200-01
Chr09	irgsp1_rep	CDS	9383365	9383429	.	-	0	Parent=Os09t0322200-01
Chr09	irgsp1_rep	CDS	9382527	9382707	.	-	1	Parent=Os09t0322200-01
Chr09	irgsp1_rep	CDS	9382232	9382304	.	-	0	Parent=Os09t0322200-01
Chr09	irgsp1_rep	CDS	9381732	9381763	.	-	2	Parent=Os09t0322200-01
Chr09	irgsp1_rep	three_prime_UTR	9381638	9381731	.	-	.	Parent=Os09t0322200-01
Chr09	irgsp1_rep	three_prime_UTR	9380667	9380746	.	-	.	Parent=Os09t0322200-01
Chr09	irgsp1_rep	three_prime_UTR	9380445	9380560	.	-	.	Parent=Os09t0322200-01
Chr09	irgsp1_rep	three_prime_UTR	9380205	9380325	.	-	.	Parent=Os09t0322200-01
Chr09	irgsp1_rep	three_prime_UTR	9379558	9380077	.	-	.	Parent=Os09t0322200-01
Chr09	irgsp1_rep	mRNA	9385267	9387224	.	+	.	ID=Os09t0322300-01;Name=Os09t0322300-01;Locus_id=Os09g0322300;Note=Conserved hypothetical protein.;Transcript_evidence=AK107151 (DDBJ%2C Best hit);ORF_evidence=B9FP80 (UniProt);NIAS_FLcDNA=002-124-E03;Expression=AK107151;TENOR=Os09t0322300-01;KEGG=Os09t0322300-01
Chr09	irgsp1_rep	five_prime_UTR	9385267	9385367	.	+	.	Parent=Os09t0322300-01
Chr09	irgsp1_rep	CDS	9385368	9385706	.	+	0	Parent=Os09t0322300-01
Chr09	irgsp1_rep	three_prime_UTR	9385707	9387224	.	+	.	Parent=Os09t0322300-01
Chr09	irgsp1_rep	mRNA	9385278	9387636	.	+	.	ID=Os09t0322300-02;Name=Os09t0322300-02;Locus_id=Os09g0322300;Note=Hypothetical conserved gene.;Transcript_evidence=AK288039 (DDBJ%2C Best hit);ORF_evidence=B9FP80 (UniProt);NIAS_FLcDNA=J075143O05;TENOR=Os09t0322300-02;KEGG=Os09t0322300-02
Chr09	irgsp1_rep	five_prime_UTR	9385278	9385367	.	+	.	Parent=Os09t0322300-02
Chr09	irgsp1_rep	CDS	9385368	9385628	.	+	0	Parent=Os09t0322300-02
Chr09	irgsp1_rep	CDS	9386397	9386489	.	+	0	Parent=Os09t0322300-02
Chr09	irgsp1_rep	three_prime_UTR	9386490	9386493	.	+	.	Parent=Os09t0322300-02
Chr09	irgsp1_rep	three_prime_UTR	9386901	9386944	.	+	.	Parent=Os09t0322300-02
Chr09	irgsp1_rep	three_prime_UTR	9387396	9387636	.	+	.	Parent=Os09t0322300-02
Chr09	irgsp1_rep	mRNA	9397235	9398010	.	-	.	ID=Os09t0322400-01;Name=Os09t0322400-01;Locus_id=Os09g0322400;Note=Proteolipid membrane potential modulator domain containing protein.;Transcript_evidence=AK062723 (DDBJ%2C Best hit);ORF_evidence=longestORF;GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Proteolipid membrane potential modulator (IPR000612);NIAS_FLcDNA=001-106-D06;Expression=AK062723;TENOR=Os09t0322400-01;KEGG=Os09t0322400-01
Chr09	irgsp1_rep	five_prime_UTR	9397879	9398010	.	-	.	Parent=Os09t0322400-01
Chr09	irgsp1_rep	CDS	9397630	9397878	.	-	0	Parent=Os09t0322400-01
Chr09	irgsp1_rep	three_prime_UTR	9397235	9397629	.	-	.	Parent=Os09t0322400-01
Chr09	irgsp1_rep	mRNA	9399112	9402405	.	+	.	ID=Os09t0322500-01;Name=Os09t0322500-01;Locus_id=Os09g0322500;Note=Hypothetical conserved gene.;Transcript_evidence=AK243660 (DDBJ%2C Best hit);ORF_evidence=A3BXF1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J100089C17;TENOR=Os09t0322500-01;KEGG=Os09t0322500-01
Chr09	irgsp1_rep	five_prime_UTR	9399112	9399314	.	+	.	Parent=Os09t0322500-01
Chr09	irgsp1_rep	CDS	9399315	9400155	.	+	0	Parent=Os09t0322500-01
Chr09	irgsp1_rep	CDS	9400720	9401321	.	+	2	Parent=Os09t0322500-01
Chr09	irgsp1_rep	CDS	9401429	9402133	.	+	0	Parent=Os09t0322500-01
Chr09	irgsp1_rep	three_prime_UTR	9402134	9402405	.	+	.	Parent=Os09t0322500-01
Chr09	irgsp1_rep	mRNA	9420104	9425293	.	-	.	ID=Os09t0322600-01;Name=Os09t0322600-01;Locus_id=Os09g0322600;Note=Hypothetical gene.;Transcript_evidence=AK106347 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-101-H06;Expression=AK106347;TENOR=Os09t0322600-01;KEGG=Os09t0322600-01
Chr09	irgsp1_rep	five_prime_UTR	9424962	9425293	.	-	.	Parent=Os09t0322600-01
Chr09	irgsp1_rep	five_prime_UTR	9423761	9423911	.	-	.	Parent=Os09t0322600-01
Chr09	irgsp1_rep	five_prime_UTR	9423515	9423577	.	-	.	Parent=Os09t0322600-01
Chr09	irgsp1_rep	five_prime_UTR	9423342	9423437	.	-	.	Parent=Os09t0322600-01
Chr09	irgsp1_rep	five_prime_UTR	9422116	9422698	.	-	.	Parent=Os09t0322600-01
Chr09	irgsp1_rep	CDS	9421814	9422115	.	-	0	Parent=Os09t0322600-01
Chr09	irgsp1_rep	CDS	9420673	9420868	.	-	1	Parent=Os09t0322600-01
Chr09	irgsp1_rep	three_prime_UTR	9420104	9420672	.	-	.	Parent=Os09t0322600-01
Chr09	irgsp1_rep	mRNA	9402031	9425281	.	-	.	ID=Os09t0322600-02;Name=Os09t0322600-02;Locus_id=Os09g0322600;Note=Hypothetical protein.;Transcript_evidence=AK070013 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023039K05;TENOR=Os09t0322600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	9423761	9425281	.	-	.	Parent=Os09t0322600-02
Chr09	irgsp1_rep	five_prime_UTR	9423515	9423577	.	-	.	Parent=Os09t0322600-02
Chr09	irgsp1_rep	five_prime_UTR	9423342	9423437	.	-	.	Parent=Os09t0322600-02
Chr09	irgsp1_rep	five_prime_UTR	9422100	9422698	.	-	.	Parent=Os09t0322600-02
Chr09	irgsp1_rep	five_prime_UTR	9421814	9421960	.	-	.	Parent=Os09t0322600-02
Chr09	irgsp1_rep	five_prime_UTR	9417309	9417415	.	-	.	Parent=Os09t0322600-02
Chr09	irgsp1_rep	CDS	9414344	9414513	.	-	0	Parent=Os09t0322600-02
Chr09	irgsp1_rep	CDS	9414161	9414266	.	-	1	Parent=Os09t0322600-02
Chr09	irgsp1_rep	three_prime_UTR	9414156	9414160	.	-	.	Parent=Os09t0322600-02
Chr09	irgsp1_rep	three_prime_UTR	9413248	9413380	.	-	.	Parent=Os09t0322600-02
Chr09	irgsp1_rep	three_prime_UTR	9402031	9402311	.	-	.	Parent=Os09t0322600-02
Chr09	irgsp1_rep	mRNA	9417889	9422857	.	+	.	ID=Os09t0322800-00;Name=Os09t0322800-00;Locus_id=Os09g0322800;Note=Disease resistance protein domain containing protein.;Transcript_evidence=AK369692 (DDBJ);ORF_evidence=NP_001062867.1 (RefSeq);GO=Biological Process: defense response (GO:0006952),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182),ATPase%2C AAA+ type%2C core (IPR003593);TENOR=Os09t0322800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	9417889	9419001	.	+	0	Parent=Os09t0322800-00
Chr09	irgsp1_rep	CDS	9420203	9421531	.	+	0	Parent=Os09t0322800-00
Chr09	irgsp1_rep	CDS	9421605	9421676	.	+	0	Parent=Os09t0322800-00
Chr09	irgsp1_rep	three_prime_UTR	9421677	9422857	.	+	.	Parent=Os09t0322800-00
Chr09	irgsp1_rep	mRNA	9428634	9432688	.	+	.	ID=Os09t0322900-00;Name=Os09t0322900-00;Locus_id=Os09g0322900;Note=Inositol monophosphatase domain containing protein.;Transcript_evidence=EU953973 (DDBJ);ORF_evidence=NP_001059092.1 (RefSeq);GO=Molecular Function: inositol or phosphatidylinositol phosphatase activity (GO:0004437);InterPro=Inositol monophosphatase (IPR000760),Inositol monophosphatase%2C metal-binding site (IPR020583);TENOR=Os09t0322900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	9428634	9428885	.	+	.	Parent=Os09t0322900-00
Chr09	irgsp1_rep	five_prime_UTR	9431957	9431972	.	+	.	Parent=Os09t0322900-00
Chr09	irgsp1_rep	CDS	9431973	9432117	.	+	0	Parent=Os09t0322900-00
Chr09	irgsp1_rep	CDS	9432251	9432329	.	+	2	Parent=Os09t0322900-00
Chr09	irgsp1_rep	CDS	9432435	9432529	.	+	1	Parent=Os09t0322900-00
Chr09	irgsp1_rep	CDS	9432608	9432666	.	+	2	Parent=Os09t0322900-00
Chr09	irgsp1_rep	three_prime_UTR	9432667	9432688	.	+	.	Parent=Os09t0322900-00
Chr09	irgsp1_rep	mRNA	9437790	9442553	.	-	.	ID=Os09t0323000-01;Name=Os09t0323000-01;Locus_id=Os09g0323000;CGSNL Gene Symbol=UGE4;CGSNL Gene Name=UDP-GLUCOSE EPIMERASE 4;Oryzabase Gene Symbol Synonym(s)=OsUGE4%2C OsUGE3;Oryzabase Gene Name Synonym(s)=UDP-glucose epimerase 4;Note=Similar to UDP-galactose 4-epimerase-like protein.;Transcript_evidence=AK121426 (DDBJ%2C Best hit);ORF_evidence=Q58IJ5 (UniProt);GO=Biological Process: galactose metabolic process (GO:0006012),Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: UDP-glucose 4-epimerase activity (GO:0003978),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),UDP-glucose 4-epimerase (IPR005886),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023135L03;Oryzabase=12413;Expression=AK121426;TENOR=Os09t0323000-01;KEGG=Os09t0323000-01 (EC:5.1.3.2%2C EC:5.1.3.3)
Chr09	irgsp1_rep	five_prime_UTR	9442470	9442553	.	-	.	Parent=Os09t0323000-01
Chr09	irgsp1_rep	CDS	9442242	9442469	.	-	0	Parent=Os09t0323000-01
Chr09	irgsp1_rep	CDS	9440835	9440884	.	-	0	Parent=Os09t0323000-01
Chr09	irgsp1_rep	CDS	9440570	9440705	.	-	1	Parent=Os09t0323000-01
Chr09	irgsp1_rep	CDS	9440047	9440148	.	-	0	Parent=Os09t0323000-01
Chr09	irgsp1_rep	CDS	9439739	9439966	.	-	0	Parent=Os09t0323000-01
Chr09	irgsp1_rep	CDS	9439032	9439110	.	-	0	Parent=Os09t0323000-01
Chr09	irgsp1_rep	CDS	9438744	9438826	.	-	2	Parent=Os09t0323000-01
Chr09	irgsp1_rep	CDS	9438211	9438302	.	-	0	Parent=Os09t0323000-01
Chr09	irgsp1_rep	CDS	9438014	9438125	.	-	1	Parent=Os09t0323000-01
Chr09	irgsp1_rep	three_prime_UTR	9437790	9438013	.	-	.	Parent=Os09t0323000-01
Chr09	irgsp1_rep	mRNA	9437673	9438787	.	-	.	ID=Os09t0323000-02;Name=Os09t0323000-02;Locus_id=Os09g0323000;CGSNL Gene Symbol=UGE4;CGSNL Gene Name=UDP-GLUCOSE EPIMERASE 4;Oryzabase Gene Symbol Synonym(s)=OsUGE4%2C OsUGE3;Oryzabase Gene Name Synonym(s)=UDP-glucose epimerase 4;Note=Similar to UDP-D-glucose epimerase 2.;Transcript_evidence=AK063871 (DDBJ%2C Best hit);ORF_evidence=Q58IJ5 (UniProt);GO=Biological Process: galactose metabolic process (GO:0006012),Molecular Function: UDP-glucose 4-epimerase activity (GO:0003978);InterPro=UDP-glucose 4-epimerase (IPR005886);NIAS_FLcDNA=001-122-E09;Oryzabase=12413;Expression=AK063871;TENOR=Os09t0323000-02;KEGG=Os09t0323000-02 (EC:5.1.3.2%2C EC:5.1.3.3)
Chr09	irgsp1_rep	five_prime_UTR	9438786	9438787	.	-	.	Parent=Os09t0323000-02
Chr09	irgsp1_rep	CDS	9438744	9438785	.	-	0	Parent=Os09t0323000-02
Chr09	irgsp1_rep	CDS	9438211	9438302	.	-	0	Parent=Os09t0323000-02
Chr09	irgsp1_rep	CDS	9438014	9438125	.	-	1	Parent=Os09t0323000-02
Chr09	irgsp1_rep	three_prime_UTR	9437673	9438013	.	-	.	Parent=Os09t0323000-02
Chr09	irgsp1_rep	mRNA	9445002	9449751	.	-	.	ID=Os09t0323100-01;Name=Os09t0323100-01;Locus_id=Os09g0323100;RAP-DB Gene Symbol Synonym(s)=OsHTAS;RAP-DB Gene Name Synonym(s)=heat tolerance at seedling stage%2C HEAT TOLERANCE AT SEEDLING STAGE;CGSNL Gene Symbol=HTAS;CGSNL Gene Name=HEAT TOLERANCE AT SEEDLING STAGE;Oryzabase Gene Symbol Synonym(s)=OsHTAS;Oryzabase Gene Name Synonym(s)=heat tolerance at seedling stage;Note=RING finger ubiquitin E3 ligase%2C Heat tolerance%2C Modulation of hydrogen peroxide-induced stomatal closure;Transcript_evidence=AK069027,KU133655;ORF_evidence=Q6K2E0;GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-CH-type (IPR011016),Zinc finger%2C RING-type (IPR001841);NIAS_FLcDNA=J023003A15;Manual Curation=January 7%2C 2016;Literature_PMID=26564152,23258571;Oryzabase=14356;Expression=AK069027;TENOR=Os09t0323100-01;KEGG=Os09t0323100-01
Chr09	irgsp1_rep	five_prime_UTR	9449588	9449751	.	-	.	Parent=Os09t0323100-01
Chr09	irgsp1_rep	five_prime_UTR	9448053	9448288	.	-	.	Parent=Os09t0323100-01
Chr09	irgsp1_rep	CDS	9447475	9448052	.	-	0	Parent=Os09t0323100-01
Chr09	irgsp1_rep	CDS	9446633	9446767	.	-	1	Parent=Os09t0323100-01
Chr09	irgsp1_rep	CDS	9446264	9446558	.	-	1	Parent=Os09t0323100-01
Chr09	irgsp1_rep	CDS	9445357	9445593	.	-	0	Parent=Os09t0323100-01
Chr09	irgsp1_rep	three_prime_UTR	9445002	9445356	.	-	.	Parent=Os09t0323100-01
Chr09	irgsp1_rep	mRNA	9445098	9449689	.	-	.	ID=Os09t0323100-02;Name=Os09t0323100-02;Locus_id=Os09g0323100;CGSNL Gene Symbol=HTAS;CGSNL Gene Name=HEAT TOLERANCE AT SEEDLING STAGE;Oryzabase Gene Symbol Synonym(s)=OsHTAS;Oryzabase Gene Name Synonym(s)=heat tolerance at seedling stage;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK120204 (DDBJ%2C Best hit);ORF_evidence=B6TV66 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING-CH-type (IPR011016),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J013037N18;Oryzabase=14356;Expression=AK120204;TENOR=Os09t0323100-02;KEGG=Os09t0323100-02
Chr09	irgsp1_rep	five_prime_UTR	9449588	9449689	.	-	.	Parent=Os09t0323100-02
Chr09	irgsp1_rep	five_prime_UTR	9448053	9448288	.	-	.	Parent=Os09t0323100-02
Chr09	irgsp1_rep	CDS	9447475	9448052	.	-	0	Parent=Os09t0323100-02
Chr09	irgsp1_rep	CDS	9446633	9446767	.	-	1	Parent=Os09t0323100-02
Chr09	irgsp1_rep	CDS	9446264	9446558	.	-	1	Parent=Os09t0323100-02
Chr09	irgsp1_rep	CDS	9445357	9445593	.	-	0	Parent=Os09t0323100-02
Chr09	irgsp1_rep	three_prime_UTR	9445098	9445356	.	-	.	Parent=Os09t0323100-02
Chr09	irgsp1_rep	mRNA	9445096	9448273	.	+	.	ID=Os09t0323150-00;Name=Os09t0323150-00;Locus_id=Os09g0323150;Note=Hypothetical protein.;Transcript_evidence=tplb0030e06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0323150-00
Chr09	irgsp1_rep	five_prime_UTR	9445096	9445590	.	+	.	Parent=Os09t0323150-00
Chr09	irgsp1_rep	five_prime_UTR	9446261	9446557	.	+	.	Parent=Os09t0323150-00
Chr09	irgsp1_rep	five_prime_UTR	9446632	9446766	.	+	.	Parent=Os09t0323150-00
Chr09	irgsp1_rep	five_prime_UTR	9447474	9448016	.	+	.	Parent=Os09t0323150-00
Chr09	irgsp1_rep	CDS	9448017	9448273	.	+	0	Parent=Os09t0323150-00
Chr09	irgsp1_rep	mRNA	9459302	9460255	.	+	.	ID=Os09t0323400-00;Name=Os09t0323400-00;Locus_id=Os09g0323400;Oryzabase Gene Symbol Synonym(s)=Os_F0448;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK369480 (DDBJ);ORF_evidence=Q6K2D6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17538;TENOR=Os09t0323400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	9459302	9460255	.	+	0	Parent=Os09t0323400-00
Chr09	irgsp1_rep	mRNA	9476484	9478842	.	-	.	ID=Os09t0323500-01;Name=Os09t0323500-01;Locus_id=Os09g0323500;Note=Protein of unknown function DUF833 family protein.;Transcript_evidence=AK071737 (DDBJ%2C Best hit);ORF_evidence=B6TDB2 (UniProt);InterPro=Protein of unknown function DUF833 (IPR008551);NIAS_FLcDNA=J023109A10;Expression=AK071737;TENOR=Os09t0323500-01;KEGG=Os09t0323500-01
Chr09	irgsp1_rep	five_prime_UTR	9478783	9478842	.	-	.	Parent=Os09t0323500-01
Chr09	irgsp1_rep	CDS	9478700	9478782	.	-	0	Parent=Os09t0323500-01
Chr09	irgsp1_rep	CDS	9478369	9478558	.	-	1	Parent=Os09t0323500-01
Chr09	irgsp1_rep	CDS	9477736	9477942	.	-	0	Parent=Os09t0323500-01
Chr09	irgsp1_rep	CDS	9477050	9477244	.	-	0	Parent=Os09t0323500-01
Chr09	irgsp1_rep	CDS	9476725	9476850	.	-	0	Parent=Os09t0323500-01
Chr09	irgsp1_rep	three_prime_UTR	9476484	9476724	.	-	.	Parent=Os09t0323500-01
Chr09	irgsp1_rep	mRNA	9486037	9487139	.	+	.	ID=Os09t0323700-00;Name=Os09t0323700-00;Locus_id=Os09g0323700;Oryzabase Gene Symbol Synonym(s)=prx121;Oryzabase Gene Name Synonym(s)=class III peroxidase 121;Note=Haem peroxidase family protein.;Transcript_evidence=AK362766 (DDBJ);ORF_evidence=Q5U1H3 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);Oryzabase=14638;TENOR=Os09t0323700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	9486037	9486054	.	+	.	Parent=Os09t0323700-00
Chr09	irgsp1_rep	CDS	9486055	9486282	.	+	0	Parent=Os09t0323700-00
Chr09	irgsp1_rep	CDS	9486366	9487124	.	+	0	Parent=Os09t0323700-00
Chr09	irgsp1_rep	three_prime_UTR	9487125	9487139	.	+	.	Parent=Os09t0323700-00
Chr09	irgsp1_rep	mRNA	9492263	9492544	.	-	.	ID=Os09t0323900-00;Name=Os09t0323900-00;Locus_id=Os09g0323900;Oryzabase Gene Symbol Synonym(s)=prx120;Oryzabase Gene Name Synonym(s)=class III peroxidase 120;Note=Similar to Class III peroxidase 120.;Transcript_evidence=ab initio prediction;ORF_evidence=Q5U1H3 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Haem peroxidase (IPR010255),Peroxidase%2C active site (IPR019794);Oryzabase=14637;TENOR=Os09t0323900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	9492263	9492544	.	-	0	Parent=Os09t0323900-00
Chr09	irgsp1_rep	mRNA	9496346	9497016	.	+	.	ID=Os09t0324000-02;Name=Os09t0324000-02;Locus_id=Os09g0324000;CGSNL Gene Symbol=OLE4;CGSNL Gene Name=OLEOSIN 4;Oryzabase Gene Symbol Synonym(s)=OsOLE4%2C Os-OLE4;Oryzabase Gene Name Synonym(s)=oleosin 4;Note=Similar to Oleosin.;Transcript_evidence=AK107774 (DDBJ%2C Best hit),AK119722 (DDBJ%2C Best hit);ORF_evidence=A2YZV4 (UniProt);GO=Cellular Component: monolayer-surrounded lipid storage body (GO:0012511),Cellular Component: integral to membrane (GO:0016021);InterPro=Oleosin (IPR000136);NIAS_FLcDNA=002-133-B10,002-157-G10;Oryzabase=9899;Expression=AK107774;TENOR=Os09t0324000-02;KEGG=Os09t0324000-02
Chr09	irgsp1_rep	five_prime_UTR	9496346	9496390	.	+	.	Parent=Os09t0324000-02
Chr09	irgsp1_rep	CDS	9496391	9496867	.	+	0	Parent=Os09t0324000-02
Chr09	irgsp1_rep	three_prime_UTR	9496868	9497016	.	+	.	Parent=Os09t0324000-02
Chr09	irgsp1_rep	mRNA	9498904	9500493	.	+	.	ID=Os09t0324200-01;Name=Os09t0324200-01;Locus_id=Os09g0324200;Oryzabase Gene Symbol Synonym(s)=OsFbox471%2C Os_F0538;Oryzabase Gene Name Synonym(s)=F-box protein 471;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK109621 (DDBJ%2C Best hit);ORF_evidence=A2YZV6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-138-A06;Oryzabase=17241;Expression=AK109621;TENOR=Os09t0324200-01;KEGG=Os09t0324200-01
Chr09	irgsp1_rep	five_prime_UTR	9498904	9499021	.	+	.	Parent=Os09t0324200-01
Chr09	irgsp1_rep	CDS	9499022	9500347	.	+	0	Parent=Os09t0324200-01
Chr09	irgsp1_rep	three_prime_UTR	9500348	9500493	.	+	.	Parent=Os09t0324200-01
Chr09	irgsp1_rep	mRNA	9501347	9502869	.	+	.	ID=Os09t0324300-01;Name=Os09t0324300-01;Locus_id=Os09g0324300;Oryzabase Gene Symbol Synonym(s)=OsFbox472%2C Fbox472%2C Os_F0599%2C OsFBX313%2C FBX313;Oryzabase Gene Name Synonym(s)=F-box protein 472;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK109691 (DDBJ%2C Best hit);ORF_evidence=B8BEG4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-145-E06;Oryzabase=17242;Expression=AK109691;TENOR=Os09t0324300-01;KEGG=Os09t0324300-01
Chr09	irgsp1_rep	five_prime_UTR	9501347	9501366	.	+	.	Parent=Os09t0324300-01
Chr09	irgsp1_rep	CDS	9501367	9502773	.	+	0	Parent=Os09t0324300-01
Chr09	irgsp1_rep	three_prime_UTR	9502774	9502869	.	+	.	Parent=Os09t0324300-01
Chr09	irgsp1_rep	mRNA	9505694	9507077	.	+	.	ID=Os09t0324400-01;Name=Os09t0324400-01;Locus_id=Os09g0324400;Oryzabase Gene Symbol Synonym(s)=OsFbox473%2C Os_F0455;Oryzabase Gene Name Synonym(s)=F-box protein 473;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK108615 (DDBJ%2C Best hit);ORF_evidence=A3BXG6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-147-B05;Oryzabase=17243;Expression=AK108615;TENOR=Os09t0324400-01;KEGG=Os09t0324400-01
Chr09	irgsp1_rep	five_prime_UTR	9505694	9505700	.	+	.	Parent=Os09t0324400-01
Chr09	irgsp1_rep	CDS	9505701	9506990	.	+	0	Parent=Os09t0324400-01
Chr09	irgsp1_rep	three_prime_UTR	9506991	9507077	.	+	.	Parent=Os09t0324400-01
Chr09	irgsp1_rep	mRNA	9514333	9515776	.	-	.	ID=Os09t0325000-00;Name=Os09t0325000-00;Locus_id=Os09g0325000;Note=Similar to cDNA clone:001-038-B01%2C full insert sequence.;Transcript_evidence=ab initio prediction;ORF_evidence=B7E6S3 (UniProt);TENOR=Os09t0325000-00;KEGG=Os09t0325000-00
Chr09	irgsp1_rep	CDS	9515731	9515776	.	-	0	Parent=Os09t0325000-00
Chr09	irgsp1_rep	CDS	9515030	9515091	.	-	2	Parent=Os09t0325000-00
Chr09	irgsp1_rep	CDS	9514584	9514682	.	-	0	Parent=Os09t0325000-00
Chr09	irgsp1_rep	CDS	9514333	9514479	.	-	0	Parent=Os09t0325000-00
Chr09	irgsp1_rep	mRNA	9513257	9513815	.	-	.	ID=Os09t0325100-01;Name=Os09t0325100-01;Locus_id=Os09g0325100;Note=Conserved hypothetical protein.;Transcript_evidence=AK242436 (DDBJ%2C Best hit);ORF_evidence=NP_001175771.1 (RefSeq);NIAS_FLcDNA=J080093L01;TENOR=Os09t0325100-01;KEGG=Os09t0325100-01
Chr09	irgsp1_rep	five_prime_UTR	9513569	9513815	.	-	.	Parent=Os09t0325100-01
Chr09	irgsp1_rep	CDS	9513326	9513568	.	-	0	Parent=Os09t0325100-01
Chr09	irgsp1_rep	three_prime_UTR	9513257	9513325	.	-	.	Parent=Os09t0325100-01
Chr09	irgsp1_rep	mRNA	9515797	9516782	.	-	.	ID=Os09t0325140-00;Name=Os09t0325140-00;Locus_id=Os09g0325140;CGSNL Gene Symbol=RLCK261;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 261;Oryzabase Gene Symbol Synonym(s)=OsRLCK261;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 261;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=D7UPN3 (UniProt);Oryzabase=18951;TENOR=Os09t0325140-00;KEGG=Os09t0325140-00
Chr09	irgsp1_rep	CDS	9516635	9516782	.	-	0	Parent=Os09t0325140-00
Chr09	irgsp1_rep	CDS	9515797	9516383	.	-	2	Parent=Os09t0325140-00
Chr09	irgsp1_rep	mRNA	9521791	9524455	.	+	.	ID=Os09t0325220-00;Name=Os09t0325220-00;Locus_id=Os09g0325220;Oryzabase Gene Symbol Synonym(s)=OsFbox475%2C Os_F0634;Oryzabase Gene Name Synonym(s)=F-box protein 475;Note=Conserved hypothetical protein.;Transcript_evidence=AB511824 (DDBJ);ORF_evidence=NP_001175773.1 (RefSeq);Oryzabase=17245;TENOR=Os09t0325220-00
Chr09	irgsp1_rep	CDS	9521791	9521913	.	+	0	Parent=Os09t0325220-00
Chr09	irgsp1_rep	CDS	9522882	9523709	.	+	0	Parent=Os09t0325220-00
Chr09	irgsp1_rep	CDS	9523806	9523958	.	+	0	Parent=Os09t0325220-00
Chr09	irgsp1_rep	CDS	9524045	9524455	.	+	0	Parent=Os09t0325220-00
Chr09	irgsp1_rep	mRNA	9544294	9546478	.	+	.	ID=Os09t0325300-01;Name=Os09t0325300-01;Locus_id=Os09g0325300;Note=Hypothetical protein.;Transcript_evidence=AK073998 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033071H21;TENOR=Os09t0325300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	9544294	9544696	.	+	.	Parent=Os09t0325300-01
Chr09	irgsp1_rep	five_prime_UTR	9545217	9545758	.	+	.	Parent=Os09t0325300-01
Chr09	irgsp1_rep	CDS	9545759	9546127	.	+	0	Parent=Os09t0325300-01
Chr09	irgsp1_rep	three_prime_UTR	9546128	9546478	.	+	.	Parent=Os09t0325300-01
Chr09	irgsp1_rep	mRNA	9549220	9550410	.	+	.	ID=Os09t0325366-01;Name=Os09t0325366-01;Locus_id=Os09g0325366;Note=Hypothetical conserved gene.;Transcript_evidence=AK288486 (DDBJ%2C Best hit);ORF_evidence=Q69UY3 (UniProt);NIAS_FLcDNA=J090040F02;TENOR=Os09t0325366-01;KEGG=Os09t0325366-01
Chr09	irgsp1_rep	five_prime_UTR	9549220	9550215	.	+	.	Parent=Os09t0325366-01
Chr09	irgsp1_rep	CDS	9550216	9550326	.	+	0	Parent=Os09t0325366-01
Chr09	irgsp1_rep	three_prime_UTR	9550327	9550410	.	+	.	Parent=Os09t0325366-01
Chr09	irgsp1_rep	mRNA	9567471	9568877	.	+	.	ID=Os09t0325700-01;Name=Os09t0325700-01;Locus_id=Os09g0325700;RAP-DB Gene Symbol Synonym(s)=PP2C1%2C OsPP2C1%2C OsSIPP2C1%2C OsPP2C68%2C PP2C68%2C OsPP108;RAP-DB Gene Name Synonym(s)=PROTEIN PHOSPHATASE 2C-1%2C protein phosphatase2C-1%2C protein phosphatase2C-l%2C salt-induced PP2C Protein 1%2C protein phosphatase 2C68%2C protein phosphatase 2C 68%2C protein phosphatase 108;CGSNL Gene Symbol=PP2C1;CGSNL Gene Name=PROTEIN PHOSPHATASE 2C-1;Oryzabase Gene Symbol Synonym(s)=OsPP2C1%2C OsSIPP2C1%2C OsPP2C68%2C PP2C68%2C OsPP108;Oryzabase Gene Name Synonym(s)=protein phosphatase2C-1%2C protein phosphatase2C-l%2C salt-induced PP2C Protein 1%2C protein phosphatase 2C68%2C protein phosphatase 2C 68%2C protein phosphatase 108;Note=Protein phosphatase 2C%2C Abiotic stress response%2C Early panicle development;Transcript_evidence=AK063334;ORF_evidence=Q0J2L7;GO=Biological Process: protein dephosphorylation (GO:0006470),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722),Molecular Function: cation binding (GO:0043169);InterPro=Protein phosphatase 2C family (IPR015655),PPM-type phosphatase domain (IPR001932),PPM-type phosphatase%2C divalent cation binding (IPR000222);NIAS_FLcDNA=001-114-A05;Manual Curation=February 13%2C 2017;Literature_PMID=23086454;Oryzabase=11549;Expression=AK063334;TENOR=Os09t0325700-01;KEGG=Os09t0325700-01 (EC:3.1.3.16);Subcellular location=nucleus (GO:0005634) [mainly]
Chr09	irgsp1_rep	five_prime_UTR	9567471	9567550	.	+	.	Parent=Os09t0325700-01
Chr09	irgsp1_rep	CDS	9567551	9568627	.	+	0	Parent=Os09t0325700-01
Chr09	irgsp1_rep	three_prime_UTR	9568628	9568877	.	+	.	Parent=Os09t0325700-01
Chr09	irgsp1_rep	mRNA	9570454	9571682	.	+	.	ID=Os09t0325800-01;Name=Os09t0325800-01;Locus_id=Os09g0325800;Note=Conserved hypothetical protein.;Transcript_evidence=AK105247 (DDBJ%2C Best hit);ORF_evidence=B9G2W9 (UniProt);NIAS_FLcDNA=001-113-H12;TENOR=Os09t0325800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	9570454	9570711	.	+	.	Parent=Os09t0325800-01
Chr09	irgsp1_rep	five_prime_UTR	9570879	9570959	.	+	.	Parent=Os09t0325800-01
Chr09	irgsp1_rep	CDS	9570960	9571343	.	+	0	Parent=Os09t0325800-01
Chr09	irgsp1_rep	three_prime_UTR	9571344	9571682	.	+	.	Parent=Os09t0325800-01
Chr09	irgsp1_rep	mRNA	9577710	9581099	.	-	.	ID=Os09t0326100-01;Name=Os09t0326100-01;Locus_id=Os09g0326100;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK120843 (DDBJ%2C Best hit);ORF_evidence=B8BEG8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023022K03;Expression=AK120843;TENOR=Os09t0326100-01;KEGG=Os09t0326100-01
Chr09	irgsp1_rep	five_prime_UTR	9581078	9581099	.	-	.	Parent=Os09t0326100-01
Chr09	irgsp1_rep	CDS	9578530	9581077	.	-	0	Parent=Os09t0326100-01
Chr09	irgsp1_rep	CDS	9577918	9578273	.	-	2	Parent=Os09t0326100-01
Chr09	irgsp1_rep	three_prime_UTR	9577710	9577917	.	-	.	Parent=Os09t0326100-01
Chr09	irgsp1_rep	mRNA	9620376	9628563	.	+	.	ID=Os09t0326800-01;Name=Os09t0326800-01;Locus_id=Os09g0326800;CGSNL Gene Symbol=RPN1A;CGSNL Gene Name=19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 1A;Oryzabase Gene Symbol Synonym(s)=OsRpn1a%2C Rpn1a;Oryzabase Gene Name Synonym(s)=19S regulatory particle non-ATPase subunit 1a%2C RP non-ATPase 1a;Note=Similar to PSMD2 subunit (Fragment).;Transcript_evidence=AK071400 (DDBJ%2C Best hit);ORF_evidence=XP_002884212.1 (RefSeq);GO=Biological Process: regulation of protein catabolic process (GO:0042176),Cellular Component: proteasome complex (GO:0000502),Molecular Function: binding (GO:0005488),Molecular Function: enzyme regulator activity (GO:0030234);InterPro=Proteasome/cyclosome%2C regulatory subunit (IPR002015),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),26S proteasome regulatory complex%2C non-ATPase subcomplex%2C Rpn1 subunit (IPR016643);NIAS_FLcDNA=J023092J12;Oryzabase=20560;Expression=AK071400;TENOR=Os09t0326800-01;KEGG=Os09t0326800-01
Chr09	irgsp1_rep	five_prime_UTR	9620376	9620506	.	+	.	Parent=Os09t0326800-01
Chr09	irgsp1_rep	CDS	9620507	9620617	.	+	0	Parent=Os09t0326800-01
Chr09	irgsp1_rep	CDS	9620700	9620800	.	+	0	Parent=Os09t0326800-01
Chr09	irgsp1_rep	CDS	9621378	9621498	.	+	1	Parent=Os09t0326800-01
Chr09	irgsp1_rep	CDS	9621584	9621643	.	+	0	Parent=Os09t0326800-01
Chr09	irgsp1_rep	CDS	9621873	9621940	.	+	0	Parent=Os09t0326800-01
Chr09	irgsp1_rep	CDS	9622475	9622517	.	+	1	Parent=Os09t0326800-01
Chr09	irgsp1_rep	CDS	9623003	9623068	.	+	0	Parent=Os09t0326800-01
Chr09	irgsp1_rep	CDS	9623223	9623261	.	+	0	Parent=Os09t0326800-01
Chr09	irgsp1_rep	CDS	9623378	9623460	.	+	0	Parent=Os09t0326800-01
Chr09	irgsp1_rep	CDS	9623563	9623674	.	+	1	Parent=Os09t0326800-01
Chr09	irgsp1_rep	CDS	9623753	9623833	.	+	0	Parent=Os09t0326800-01
Chr09	irgsp1_rep	CDS	9623983	9624141	.	+	0	Parent=Os09t0326800-01
Chr09	irgsp1_rep	CDS	9624248	9624355	.	+	0	Parent=Os09t0326800-01
Chr09	irgsp1_rep	CDS	9624421	9624525	.	+	0	Parent=Os09t0326800-01
Chr09	irgsp1_rep	CDS	9624616	9624756	.	+	0	Parent=Os09t0326800-01
Chr09	irgsp1_rep	CDS	9624858	9624962	.	+	0	Parent=Os09t0326800-01
Chr09	irgsp1_rep	CDS	9625056	9625277	.	+	0	Parent=Os09t0326800-01
Chr09	irgsp1_rep	CDS	9626468	9626581	.	+	0	Parent=Os09t0326800-01
Chr09	irgsp1_rep	CDS	9626681	9626896	.	+	0	Parent=Os09t0326800-01
Chr09	irgsp1_rep	CDS	9627224	9627283	.	+	0	Parent=Os09t0326800-01
Chr09	irgsp1_rep	CDS	9627364	9627477	.	+	0	Parent=Os09t0326800-01
Chr09	irgsp1_rep	CDS	9627586	9627671	.	+	0	Parent=Os09t0326800-01
Chr09	irgsp1_rep	CDS	9627755	9627863	.	+	1	Parent=Os09t0326800-01
Chr09	irgsp1_rep	CDS	9627950	9628128	.	+	0	Parent=Os09t0326800-01
Chr09	irgsp1_rep	CDS	9628208	9628280	.	+	1	Parent=Os09t0326800-01
Chr09	irgsp1_rep	three_prime_UTR	9628281	9628563	.	+	.	Parent=Os09t0326800-01
Chr09	irgsp1_rep	mRNA	9629416	9631763	.	+	.	ID=Os09t0326850-01;Name=Os09t0326850-01;Locus_id=Os09g0326850;Note=Yos1-like domain containing protein.;Transcript_evidence=AK243627 (DDBJ%2C Best hit);ORF_evidence=NP_001175777.1 (RefSeq);InterPro=Yos1-like (IPR013880);NIAS_FLcDNA=J100086N18;TENOR=Os09t0326850-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	9629416	9629533	.	+	.	Parent=Os09t0326850-01
Chr09	irgsp1_rep	five_prime_UTR	9630338	9630591	.	+	.	Parent=Os09t0326850-01
Chr09	irgsp1_rep	CDS	9630592	9630616	.	+	0	Parent=Os09t0326850-01
Chr09	irgsp1_rep	CDS	9631297	9631535	.	+	2	Parent=Os09t0326850-01
Chr09	irgsp1_rep	three_prime_UTR	9631536	9631763	.	+	.	Parent=Os09t0326850-01
Chr09	irgsp1_rep	mRNA	9634476	9638003	.	+	.	ID=Os09t0326900-01;Name=Os09t0326900-01;Locus_id=Os09g0326900;Oryzabase Gene Symbol Synonym(s)=BIP107;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 107%2C BRI1-interacting protein 107%2C brassinosteroid receptor kinase-interacting protein 107;Note=Similar to Eukaryotic translation initiation factor 5 (eIF-5).;Transcript_evidence=AK067685 (DDBJ%2C Best hit),AK098857 (DDBJ%2C Best hit);ORF_evidence=B6T7C2 (UniProt);GO=Biological Process: translational initiation (GO:0006413),Biological Process: RNA metabolic process (GO:0016070),Molecular Function: translation initiation factor activity (GO:0003743),Molecular Function: binding (GO:0005488);InterPro=Translation initiation factor IF2/IF5 (IPR002735),eIF4-gamma/eIF5/eIF2-epsilon (IPR003307),MIF4-like%2C type 1/2/3 (IPR016021),Armadillo-type fold (IPR016024),Translation initiation factor IF2/IF5%2C N-terminal (IPR016189),Translation initiation factor IF2/IF5%2C zinc-binding (IPR016190);NIAS_FLcDNA=J013116G06,J013000L01;Oryzabase=13693;Expression=AK067685;TENOR=Os09t0326900-01;KEGG=Os09t0326900-01
Chr09	irgsp1_rep	five_prime_UTR	9634476	9634618	.	+	.	Parent=Os09t0326900-01
Chr09	irgsp1_rep	five_prime_UTR	9636141	9636408	.	+	.	Parent=Os09t0326900-01
Chr09	irgsp1_rep	CDS	9636409	9637761	.	+	0	Parent=Os09t0326900-01
Chr09	irgsp1_rep	three_prime_UTR	9637762	9638003	.	+	.	Parent=Os09t0326900-01
Chr09	irgsp1_rep	mRNA	9636592	9637998	.	+	.	ID=Os09t0326900-02;Name=Os09t0326900-02;Locus_id=Os09g0326900;Oryzabase Gene Symbol Synonym(s)=BIP107;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 107%2C BRI1-interacting protein 107%2C brassinosteroid receptor kinase-interacting protein 107;Note=Similar to BRI1-KD interacting protein 107 (Fragment).;Transcript_evidence=AK058307 (DDBJ%2C Best hit);ORF_evidence=Q762A7 (UniProt);GO=Biological Process: translational initiation (GO:0006413),Biological Process: RNA metabolic process (GO:0016070),Molecular Function: translation initiation factor activity (GO:0003743),Molecular Function: binding (GO:0005488);InterPro=Translation initiation factor IF2/IF5 (IPR002735),eIF4-gamma/eIF5/eIF2-epsilon (IPR003307),MIF4-like%2C type 1/2/3 (IPR016021),Armadillo-type fold (IPR016024),Translation initiation factor IF2/IF5%2C zinc-binding (IPR016190);NIAS_FLcDNA=001-013-H04;Oryzabase=13693;Expression=AK058307;TENOR=Os09t0326900-02;KEGG=Os09t0326900-02
Chr09	irgsp1_rep	CDS	9636592	9637761	.	+	0	Parent=Os09t0326900-02
Chr09	irgsp1_rep	three_prime_UTR	9637762	9637998	.	+	.	Parent=Os09t0326900-02
Chr09	irgsp1_rep	mRNA	9636139	9637794	.	-	.	ID=Os09t0326950-00;Name=Os09t0326950-00;Locus_id=Os09g0326950;Note=Hypothetical protein.;Transcript_evidence=tplb0060f03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0326950-00
Chr09	irgsp1_rep	five_prime_UTR	9637786	9637794	.	-	.	Parent=Os09t0326950-00
Chr09	irgsp1_rep	CDS	9637567	9637785	.	-	0	Parent=Os09t0326950-00
Chr09	irgsp1_rep	three_prime_UTR	9637278	9637566	.	-	.	Parent=Os09t0326950-00
Chr09	irgsp1_rep	three_prime_UTR	9636139	9637219	.	-	.	Parent=Os09t0326950-00
Chr09	irgsp1_rep	mRNA	9641472	9642417	.	+	.	ID=Os09t0327000-00;Name=Os09t0327000-00;Locus_id=Os09g0327000;Note=Hypothetical conserved gene.;Transcript_evidence=AK369134 (DDBJ);ORF_evidence=B8BEH0 (UniProt);InterPro=Protein of unknown function DUF599 (IPR006747);TENOR=Os09t0327000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	9641472	9641527	.	+	.	Parent=Os09t0327000-00
Chr09	irgsp1_rep	CDS	9641528	9641698	.	+	0	Parent=Os09t0327000-00
Chr09	irgsp1_rep	CDS	9641782	9642417	.	+	0	Parent=Os09t0327000-00
Chr09	irgsp1_rep	mRNA	9641555	9642219	.	-	.	ID=Os09t0327050-00;Name=Os09t0327050-00;Locus_id=Os09g0327050;Note=Hypothetical protein.;Transcript_evidence=AK375422 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0327050-00
Chr09	irgsp1_rep	CDS	9641746	9642219	.	-	0	Parent=Os09t0327050-00
Chr09	irgsp1_rep	three_prime_UTR	9641555	9641745	.	-	.	Parent=Os09t0327050-00
Chr09	irgsp1_rep	mRNA	9643566	9645793	.	-	.	ID=Os09t0327100-01;Name=Os09t0327100-01;Locus_id=Os09g0327100;Oryzabase Gene Symbol Synonym(s)=OsRab11C2;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab11C2;Note=Similar to GTP-binding protein.;Transcript_evidence=AK071461 (DDBJ%2C Best hit);ORF_evidence=Q68HC1 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: intracellular protein transport (GO:0006886),Biological Process: nucleocytoplasmic transport (GO:0006913),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Cellular Component: membrane (GO:0016020),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Ran GTPase (IPR002041),Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C Ras type (IPR020849),Small GTPase superfamily%2C ARF type (IPR024156);NIAS_FLcDNA=J023092H24;Oryzabase=11100;Expression=AK071461;TENOR=Os09t0327100-01;KEGG=Os09t0327100-01
Chr09	irgsp1_rep	five_prime_UTR	9645670	9645793	.	-	.	Parent=Os09t0327100-01
Chr09	irgsp1_rep	CDS	9645452	9645669	.	-	0	Parent=Os09t0327100-01
Chr09	irgsp1_rep	CDS	9643990	9644422	.	-	1	Parent=Os09t0327100-01
Chr09	irgsp1_rep	three_prime_UTR	9643566	9643989	.	-	.	Parent=Os09t0327100-01
Chr09	irgsp1_rep	mRNA	9643991	9645592	.	+	.	ID=Os09t0327150-00;Name=Os09t0327150-00;Locus_id=Os09g0327150;Note=Hypothetical gene.;Transcript_evidence=EU948966 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0327150-00
Chr09	irgsp1_rep	five_prime_UTR	9643991	9644349	.	+	.	Parent=Os09t0327150-00
Chr09	irgsp1_rep	CDS	9644350	9644433	.	+	0	Parent=Os09t0327150-00
Chr09	irgsp1_rep	CDS	9645325	9645592	.	+	0	Parent=Os09t0327150-00
Chr09	irgsp1_rep	mRNA	9647717	9650347	.	-	.	ID=Os09t0327200-00;Name=Os09t0327200-00;Locus_id=Os09g0327200;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=BT041365 (DDBJ);ORF_evidence=NP_001062888.2 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os09t0327200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	9648887	9650347	.	-	0	Parent=Os09t0327200-00
Chr09	irgsp1_rep	CDS	9647717	9648523	.	-	0	Parent=Os09t0327200-00
Chr09	irgsp1_rep	mRNA	9652209	9654956	.	+	.	ID=Os09t0327300-01;Name=Os09t0327300-01;Locus_id=Os09g0327300;Note=Similar to Plastid 5%2C10-methylene-tetrahydrofolate dehydrogenase (Fragment).;Transcript_evidence=AK059603 (DDBJ%2C Best hit);ORF_evidence=B6TJF9 (UniProt);GO=Biological Process: folic acid-containing compound biosynthetic process (GO:0009396),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: methylenetetrahydrofolate dehydrogenase (NADP+) activity (GO:0004488);InterPro=Tetrahydrofolate dehydrogenase/cyclohydrolase (IPR000672),NAD(P)-binding domain (IPR016040),Tetrahydrofolate dehydrogenase/cyclohydrolase%2C catalytic domain (IPR020630),Tetrahydrofolate dehydrogenase/cyclohydrolase%2C NAD(P)-binding domain (IPR020631);NIAS_FLcDNA=001-030-E09;Expression=AK059603;TENOR=Os09t0327300-01;KEGG=Os09t0327300-01 (EC:1.5.1.5%2C EC:3.5.4.9%2C EC:6.3.4.3)
Chr09	irgsp1_rep	five_prime_UTR	9652209	9652239	.	+	.	Parent=Os09t0327300-01
Chr09	irgsp1_rep	CDS	9652240	9652513	.	+	0	Parent=Os09t0327300-01
Chr09	irgsp1_rep	CDS	9653175	9653494	.	+	2	Parent=Os09t0327300-01
Chr09	irgsp1_rep	CDS	9653801	9654037	.	+	0	Parent=Os09t0327300-01
Chr09	irgsp1_rep	CDS	9654129	9654296	.	+	0	Parent=Os09t0327300-01
Chr09	irgsp1_rep	CDS	9654629	9654817	.	+	0	Parent=Os09t0327300-01
Chr09	irgsp1_rep	three_prime_UTR	9654818	9654956	.	+	.	Parent=Os09t0327300-01
Chr09	irgsp1_rep	mRNA	9655475	9659099	.	-	.	ID=Os09t0327400-01;Name=Os09t0327400-01;Locus_id=Os09g0327400;Note=Glycoside hydrolase-type carbohydrate-binding%2C subgroup domain containing protein.;Transcript_evidence=AK068681 (DDBJ%2C Best hit);ORF_evidence=XP_002865061.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: isomerase activity (GO:0016853),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Aldose 1-epimerase (IPR008183),Glycoside hydrolase-type carbohydrate-binding (IPR011013),Glycoside hydrolase-type carbohydrate-binding%2C subgroup (IPR014718);NIAS_FLcDNA=J013160H24;Expression=AK068681;TENOR=Os09t0327400-01;KEGG=Os09t0327400-01
Chr09	irgsp1_rep	five_prime_UTR	9659072	9659099	.	-	.	Parent=Os09t0327400-01
Chr09	irgsp1_rep	CDS	9658989	9659071	.	-	0	Parent=Os09t0327400-01
Chr09	irgsp1_rep	CDS	9658751	9658870	.	-	1	Parent=Os09t0327400-01
Chr09	irgsp1_rep	CDS	9657727	9657840	.	-	1	Parent=Os09t0327400-01
Chr09	irgsp1_rep	CDS	9657599	9657650	.	-	1	Parent=Os09t0327400-01
Chr09	irgsp1_rep	CDS	9657053	9657190	.	-	0	Parent=Os09t0327400-01
Chr09	irgsp1_rep	CDS	9656837	9656935	.	-	0	Parent=Os09t0327400-01
Chr09	irgsp1_rep	CDS	9656654	9656751	.	-	0	Parent=Os09t0327400-01
Chr09	irgsp1_rep	CDS	9656035	9656142	.	-	1	Parent=Os09t0327400-01
Chr09	irgsp1_rep	CDS	9655867	9655948	.	-	1	Parent=Os09t0327400-01
Chr09	irgsp1_rep	CDS	9655667	9655732	.	-	0	Parent=Os09t0327400-01
Chr09	irgsp1_rep	three_prime_UTR	9655475	9655666	.	-	.	Parent=Os09t0327400-01
Chr09	irgsp1_rep	mRNA	9661773	9663035	.	-	.	ID=Os09t0327500-00;Name=Os09t0327500-00;Locus_id=Os09g0327500;Note=Conserved hypothetical protein.;Transcript_evidence=EU965959 (DDBJ);ORF_evidence=NP_001062891.1 (RefSeq);TENOR=Os09t0327500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	9661773	9663035	.	-	0	Parent=Os09t0327500-00
Chr09	irgsp1_rep	mRNA	9663570	9665770	.	-	.	ID=Os09t0327550-00;Name=Os09t0327550-00;Locus_id=Os09g0327550;Note=Similar to predicted protein.;Transcript_evidence=CT835869 (DDBJ%2C Best hit);ORF_evidence=Q38888 (UniProt);InterPro=Protein of unknown function DUF220 (IPR003863);TENOR=Os09t0327550-00;KEGG=Os09t0327550-00
Chr09	irgsp1_rep	five_prime_UTR	9665617	9665770	.	-	.	Parent=Os09t0327550-00
Chr09	irgsp1_rep	five_prime_UTR	9665411	9665446	.	-	.	Parent=Os09t0327550-00
Chr09	irgsp1_rep	CDS	9665324	9665410	.	-	0	Parent=Os09t0327550-00
Chr09	irgsp1_rep	CDS	9665050	9665226	.	-	0	Parent=Os09t0327550-00
Chr09	irgsp1_rep	CDS	9664600	9664722	.	-	0	Parent=Os09t0327550-00
Chr09	irgsp1_rep	CDS	9664278	9664421	.	-	0	Parent=Os09t0327550-00
Chr09	irgsp1_rep	CDS	9663734	9664189	.	-	0	Parent=Os09t0327550-00
Chr09	irgsp1_rep	three_prime_UTR	9663570	9663733	.	-	.	Parent=Os09t0327550-00
Chr09	irgsp1_rep	mRNA	9667216	9670256	.	-	.	ID=Os09t0327575-00;Name=Os09t0327575-00;Locus_id=Os09g0327575;CGSNL Gene Symbol=PI3;CGSNL Gene Name=PYRICULARIA ORYZAE RESISTANCE 3;Oryzabase Gene Symbol Synonym(s)=Pi3%2C Pi5%2C Pi-3(t)%2C Pi-3%2C Pi3(t)%2C Pi5(t)%2C Pi5-1%2C Pii%2C RMg22%2C RMg21%2C Pii;Oryzabase Gene Name Synonym(s)=Pyricularia oryzae resistance 3%2C Magnaporthe grisea resistance-3%2C Blast resistance 3%2C Pyricularia oryzae resistance-i%2C Magnaporthe grisea resistance-I Blast resistance I;Note=Similar to Pi5-1.;Transcript_evidence=ab initio prediction;ORF_evidence=C3SBK3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);Oryzabase=20365,271;TENOR=Os09t0327575-00
Chr09	irgsp1_rep	CDS	9668973	9670256	.	-	0	Parent=Os09t0327575-00
Chr09	irgsp1_rep	CDS	9668370	9668529	.	-	0	Parent=Os09t0327575-00
Chr09	irgsp1_rep	CDS	9667216	9667352	.	-	2	Parent=Os09t0327575-00
Chr09	irgsp1_rep	mRNA	9672226	9674673	.	-	.	ID=Os09t0327600-01;Name=Os09t0327600-01;Locus_id=Os09g0327600;CGSNL Gene Symbol=PI3;CGSNL Gene Name=PYRICULARIA ORYZAE RESISTANCE 3;Oryzabase Gene Symbol Synonym(s)=Pi3%2C Pi5%2C Pi-3(t)%2C Pi-3%2C Pi3(t)%2C Pi5(t)%2C Pi5-1%2C Pii%2C RMg22%2C RMg21%2C Pii;Oryzabase Gene Name Synonym(s)=Pyricularia oryzae resistance 3%2C Magnaporthe grisea resistance-3%2C Blast resistance 3%2C Pyricularia oryzae resistance-i%2C Magnaporthe grisea resistance-I Blast resistance I;Note=Similar to Pi5-1.;Transcript_evidence=AK110932 (DDBJ%2C Best hit);ORF_evidence=C3SBK3 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=002-173-F11;Oryzabase=20365,271;TENOR=Os09t0327600-01
Chr09	irgsp1_rep	five_prime_UTR	9674618	9674673	.	-	.	Parent=Os09t0327600-01
Chr09	irgsp1_rep	CDS	9674303	9674617	.	-	0	Parent=Os09t0327600-01
Chr09	irgsp1_rep	CDS	9672226	9673279	.	-	0	Parent=Os09t0327600-01
Chr09	irgsp1_rep	mRNA	9681913	9684808	.	+	.	ID=Os09t0327800-00;Name=Os09t0327800-00;Locus_id=Os09g0327800;Note=Similar to Pi5-2.;Transcript_evidence=ab initio prediction;ORF_evidence=C3SBK4 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os09t0327800-00;KEGG=Os09t0327800-00
Chr09	irgsp1_rep	CDS	9681913	9682206	.	+	0	Parent=Os09t0327800-00
Chr09	irgsp1_rep	CDS	9682922	9683953	.	+	0	Parent=Os09t0327800-00
Chr09	irgsp1_rep	CDS	9684150	9684209	.	+	0	Parent=Os09t0327800-00
Chr09	irgsp1_rep	CDS	9684629	9684808	.	+	0	Parent=Os09t0327800-00
Chr09	irgsp1_rep	mRNA	9685643	9695070	.	+	.	ID=Os09t0328066-00;Name=Os09t0328066-00;Locus_id=Os09g0328066;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A2YZX6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);TENOR=Os09t0328066-00;KEGG=Os09t0328066-00
Chr09	irgsp1_rep	CDS	9685643	9685687	.	+	0	Parent=Os09t0328066-00
Chr09	irgsp1_rep	CDS	9686821	9688086	.	+	0	Parent=Os09t0328066-00
Chr09	irgsp1_rep	CDS	9694587	9694671	.	+	0	Parent=Os09t0328066-00
Chr09	irgsp1_rep	CDS	9694781	9695070	.	+	2	Parent=Os09t0328066-00
Chr09	irgsp1_rep	mRNA	9689647	9690023	.	-	.	ID=Os09t0328332-00;Name=Os09t0328332-00;Locus_id=Os09g0328332;Note=Non-protein coding transcript.;Transcript_evidence=AK059379 (DDBJ%2C Secondary hit);ORF_evidence=NONE;TENOR=Os09t0328332-00
Chr09	irgsp1_rep	exon	9689647	9690023	.	-	.	Parent=Os09t0328332-00
Chr09	irgsp1_rep	mRNA	9743301	9744363	.	-	.	ID=Os09t0328600-01;Name=Os09t0328600-01;Locus_id=Os09g0328600;Note=Hypothetical conserved gene.;Transcript_evidence=AK288237 (DDBJ%2C Best hit);ORF_evidence=NP_001175779.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J090013E19;TENOR=Os09t0328600-01;KEGG=Os09t0328600-01 (EC:2.1.1.43)
Chr09	irgsp1_rep	five_prime_UTR	9744324	9744363	.	-	.	Parent=Os09t0328600-01
Chr09	irgsp1_rep	CDS	9743730	9744323	.	-	0	Parent=Os09t0328600-01
Chr09	irgsp1_rep	three_prime_UTR	9743301	9743729	.	-	.	Parent=Os09t0328600-01
Chr09	irgsp1_rep	mRNA	9769146	9773105	.	+	.	ID=Os09t0328800-00;Name=Os09t0328800-00;Locus_id=Os09g0328800;Note=Hypothetical conserved gene.;Transcript_evidence=AK120825 (DDBJ%2C Secondary hit);ORF_evidence=B8BGF5 (UniProt);Expression=AK120825;TENOR=Os09t0328800-00;KEGG=Os09t0328800-00
Chr09	irgsp1_rep	five_prime_UTR	9769146	9769513	.	+	.	Parent=Os09t0328800-00
Chr09	irgsp1_rep	CDS	9769514	9769632	.	+	0	Parent=Os09t0328800-00
Chr09	irgsp1_rep	CDS	9770631	9770760	.	+	1	Parent=Os09t0328800-00
Chr09	irgsp1_rep	CDS	9771543	9771623	.	+	0	Parent=Os09t0328800-00
Chr09	irgsp1_rep	CDS	9772412	9772564	.	+	0	Parent=Os09t0328800-00
Chr09	irgsp1_rep	three_prime_UTR	9772565	9773105	.	+	.	Parent=Os09t0328800-00
Chr09	irgsp1_rep	mRNA	9774189	9774995	.	-	.	ID=Os09t0328900-00;Name=Os09t0328900-00;Locus_id=Os09g0328900;Note=Hypothetical conserved gene.;Transcript_evidence=EU964752 (DDBJ);ORF_evidence=Q6K2M3 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=FAD linked oxidase%2C N-terminal (IPR006094),FAD-binding%2C type 2 (IPR016166),FAD-linked oxidase%2C FAD-binding%2C subdomain 2 (IPR016168);TENOR=Os09t0328900-00;KEGG=Os09t0328900-00
Chr09	irgsp1_rep	CDS	9774189	9774995	.	-	0	Parent=Os09t0328900-00
Chr09	irgsp1_rep	mRNA	9781580	9783652	.	+	.	ID=Os09t0329000-00;Name=Os09t0329000-00;Locus_id=Os09g0329000;Oryzabase Gene Symbol Synonym(s)=OsBURP14;Oryzabase Gene Name Synonym(s)=BURP domain-containing protein 14;Note=BURP domain-containing protein 14.;Transcript_evidence=Q6K2M1 (UniProt);ORF_evidence=Q6K2M1 (UniProt);InterPro=BURP (IPR004873);Oryzabase=15052;TENOR=Os09t0329000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	9781580	9783652	.	+	0	Parent=Os09t0329000-00
Chr09	irgsp1_rep	mRNA	9790649	9792207	.	-	.	ID=Os09t0329200-00;Name=Os09t0329200-00;Locus_id=Os09g0329200;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=BT054542 (DDBJ);ORF_evidence=NP_001062897.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os09t0329200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	9790702	9792207	.	-	0	Parent=Os09t0329200-00
Chr09	irgsp1_rep	three_prime_UTR	9790649	9790701	.	-	.	Parent=Os09t0329200-00
Chr09	irgsp1_rep	mRNA	9826420	9827121	.	+	.	ID=Os09t0329800-01;Name=Os09t0329800-01;Locus_id=Os09g0329800;Note=Hypothetical protein.;Transcript_evidence=AK069775 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023028H13;Expression=AK069775;TENOR=Os09t0329800-01;KEGG=Os09t0329800-01
Chr09	irgsp1_rep	five_prime_UTR	9826420	9826420	.	+	.	Parent=Os09t0329800-01
Chr09	irgsp1_rep	CDS	9826421	9827023	.	+	0	Parent=Os09t0329800-01
Chr09	irgsp1_rep	three_prime_UTR	9827024	9827121	.	+	.	Parent=Os09t0329800-01
Chr09	irgsp1_rep	mRNA	9825477	9832295	.	-	.	ID=Os09t0330000-00;Name=Os09t0330000-00;Locus_id=Os09g0330000;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=CT828063 (DDBJ%2C Best hit);ORF_evidence=Q01M05 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os09t0330000-00;KEGG=Os09t0330000-00 (EC:2.4.1.17)
Chr09	irgsp1_rep	five_prime_UTR	9832268	9832295	.	-	.	Parent=Os09t0330000-00
Chr09	irgsp1_rep	CDS	9832008	9832267	.	-	0	Parent=Os09t0330000-00
Chr09	irgsp1_rep	CDS	9825634	9826870	.	-	1	Parent=Os09t0330000-00
Chr09	irgsp1_rep	three_prime_UTR	9825477	9825633	.	-	.	Parent=Os09t0330000-00
Chr09	irgsp1_rep	mRNA	9839417	9839922	.	-	.	ID=Os09t0330200-01;Name=Os09t0330200-01;Locus_id=Os09g0330200;Note=Hypothetical protein.;Transcript_evidence=AK111018 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-174-G07;Expression=AK111018;TENOR=Os09t0330200-01;KEGG=Os09t0330200-01
Chr09	irgsp1_rep	five_prime_UTR	9839918	9839922	.	-	.	Parent=Os09t0330200-01
Chr09	irgsp1_rep	CDS	9839612	9839917	.	-	0	Parent=Os09t0330200-01
Chr09	irgsp1_rep	three_prime_UTR	9839417	9839611	.	-	.	Parent=Os09t0330200-01
Chr09	irgsp1_rep	mRNA	9857202	9860810	.	+	.	ID=Os09t0330700-00;Name=Os09t0330700-00;Locus_id=Os09g0330700;Note=Ankyrin repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001062901.2 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);TENOR=Os09t0330700-00
Chr09	irgsp1_rep	CDS	9857202	9858054	.	+	0	Parent=Os09t0330700-00
Chr09	irgsp1_rep	CDS	9859055	9859611	.	+	2	Parent=Os09t0330700-00
Chr09	irgsp1_rep	CDS	9860094	9860810	.	+	0	Parent=Os09t0330700-00
Chr09	irgsp1_rep	mRNA	9881134	9884446	.	+	.	ID=Os09t0331100-00;Name=Os09t0331100-00;Locus_id=Os09g0331100;Note=Ankyrin repeat domain containing protein.;Transcript_evidence=AK369766 (DDBJ);ORF_evidence=B9G2Z2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);TENOR=Os09t0331100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	9881134	9882205	.	+	0	Parent=Os09t0331100-00
Chr09	irgsp1_rep	CDS	9883740	9884446	.	+	2	Parent=Os09t0331100-00
Chr09	irgsp1_rep	mRNA	9910746	9917711	.	-	.	ID=Os09t0331600-00;Name=Os09t0331600-00;Locus_id=Os09g0331600;Note=Ankyrin repeat domain containing protein.;Transcript_evidence=AK359383 (DDBJ);ORF_evidence=Q6EQ77 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);TENOR=Os09t0331600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	9916940	9917711	.	-	0	Parent=Os09t0331600-00
Chr09	irgsp1_rep	CDS	9911540	9912132	.	-	2	Parent=Os09t0331600-00
Chr09	irgsp1_rep	CDS	9910746	9911435	.	-	0	Parent=Os09t0331600-00
Chr09	irgsp1_rep	mRNA	9918657	9919062	.	+	.	ID=Os09t0331801-00;Name=Os09t0331801-00;Locus_id=Os09g0331801;Note=Similar to Uncharacterized protein ycf73.;Transcript_evidence=ab initio prediction;ORF_evidence=Q37066 (UniProt);TENOR=Os09t0331801-00;KEGG=Os09t0331801-00
Chr09	irgsp1_rep	CDS	9918657	9918780	.	+	0	Parent=Os09t0331801-00
Chr09	irgsp1_rep	CDS	9918926	9919062	.	+	2	Parent=Os09t0331801-00
Chr09	irgsp1_rep	mRNA	9921540	9926715	.	-	.	ID=Os09t0331900-01;Name=Os09t0331900-01;Locus_id=Os09g0331900;Note=Hypothetical conserved gene.;Transcript_evidence=AK241941 (DDBJ%2C Best hit);ORF_evidence=Q6EQ72 (UniProt);NIAS_FLcDNA=J075087I06;TENOR=Os09t0331900-01;KEGG=Os09t0331900-01
Chr09	irgsp1_rep	five_prime_UTR	9926665	9926715	.	-	.	Parent=Os09t0331900-01
Chr09	irgsp1_rep	five_prime_UTR	9924652	9924655	.	-	.	Parent=Os09t0331900-01
Chr09	irgsp1_rep	CDS	9924490	9924651	.	-	0	Parent=Os09t0331900-01
Chr09	irgsp1_rep	CDS	9922993	9923203	.	-	0	Parent=Os09t0331900-01
Chr09	irgsp1_rep	CDS	9922134	9922837	.	-	2	Parent=Os09t0331900-01
Chr09	irgsp1_rep	three_prime_UTR	9922104	9922133	.	-	.	Parent=Os09t0331900-01
Chr09	irgsp1_rep	three_prime_UTR	9921540	9921788	.	-	.	Parent=Os09t0331900-01
Chr09	irgsp1_rep	mRNA	9933451	9934162	.	+	.	ID=Os09t0332100-01;Name=Os09t0332100-01;Locus_id=Os09g0332100;Note=Conserved hypothetical protein.;Transcript_evidence=AK069759 (DDBJ%2C Best hit);ORF_evidence=A2YZZ6 (UniProt);NIAS_FLcDNA=J023030G18;Expression=AK069759;TENOR=Os09t0332100-01;KEGG=Os09t0332100-01
Chr09	irgsp1_rep	five_prime_UTR	9933451	9933564	.	+	.	Parent=Os09t0332100-01
Chr09	irgsp1_rep	CDS	9933565	9934047	.	+	0	Parent=Os09t0332100-01
Chr09	irgsp1_rep	three_prime_UTR	9934048	9934162	.	+	.	Parent=Os09t0332100-01
Chr09	irgsp1_rep	mRNA	9944988	9949327	.	-	.	ID=Os09t0332300-00;Name=Os09t0332300-00;Locus_id=Os09g0332300;CGSNL Gene Symbol=PDR21;CGSNL Gene Name=PLEIOTROPIC DRUG RESISTANCE 21;Oryzabase Gene Symbol Synonym(s)=OsABCG46%2C OsPDR21;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 46%2C pleiotropic drug resistance 21;Note=Similar to PDR20.;Transcript_evidence=AK355919 (DDBJ);ORF_evidence=A3BXL8 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC-2 type transporter (IPR013525),Plant PDR ABC transporter associated (IPR013581);Oryzabase=12019;TENOR=Os09t0332300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	9949123	9949327	.	-	0	Parent=Os09t0332300-00
Chr09	irgsp1_rep	CDS	9948905	9949008	.	-	2	Parent=Os09t0332300-00
Chr09	irgsp1_rep	CDS	9948675	9948831	.	-	0	Parent=Os09t0332300-00
Chr09	irgsp1_rep	CDS	9948458	9948574	.	-	2	Parent=Os09t0332300-00
Chr09	irgsp1_rep	CDS	9948222	9948364	.	-	2	Parent=Os09t0332300-00
Chr09	irgsp1_rep	CDS	9947770	9948102	.	-	0	Parent=Os09t0332300-00
Chr09	irgsp1_rep	CDS	9947381	9947671	.	-	0	Parent=Os09t0332300-00
Chr09	irgsp1_rep	CDS	9947163	9947246	.	-	0	Parent=Os09t0332300-00
Chr09	irgsp1_rep	CDS	9946946	9947079	.	-	0	Parent=Os09t0332300-00
Chr09	irgsp1_rep	CDS	9946181	9946408	.	-	1	Parent=Os09t0332300-00
Chr09	irgsp1_rep	CDS	9945897	9946068	.	-	1	Parent=Os09t0332300-00
Chr09	irgsp1_rep	CDS	9945495	9945749	.	-	0	Parent=Os09t0332300-00
Chr09	irgsp1_rep	CDS	9945093	9945350	.	-	0	Parent=Os09t0332300-00
Chr09	irgsp1_rep	three_prime_UTR	9944988	9945092	.	-	.	Parent=Os09t0332300-00
Chr09	irgsp1_rep	mRNA	9970156	9978234	.	+	.	ID=Os09t0332600-01;Name=Os09t0332600-01;Locus_id=Os09g0332600;Note=Hypothetical protein.;Transcript_evidence=AK101649 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033056H04;Expression=AK101649;TENOR=Os09t0332600-01;KEGG=Os09t0332600-01
Chr09	irgsp1_rep	five_prime_UTR	9970156	9970273	.	+	.	Parent=Os09t0332600-01
Chr09	irgsp1_rep	five_prime_UTR	9971630	9971840	.	+	.	Parent=Os09t0332600-01
Chr09	irgsp1_rep	five_prime_UTR	9971928	9972099	.	+	.	Parent=Os09t0332600-01
Chr09	irgsp1_rep	five_prime_UTR	9973434	9973573	.	+	.	Parent=Os09t0332600-01
Chr09	irgsp1_rep	CDS	9973574	9973864	.	+	0	Parent=Os09t0332600-01
Chr09	irgsp1_rep	three_prime_UTR	9973865	9974470	.	+	.	Parent=Os09t0332600-01
Chr09	irgsp1_rep	three_prime_UTR	9975539	9975652	.	+	.	Parent=Os09t0332600-01
Chr09	irgsp1_rep	three_prime_UTR	9976211	9976382	.	+	.	Parent=Os09t0332600-01
Chr09	irgsp1_rep	three_prime_UTR	9977097	9977191	.	+	.	Parent=Os09t0332600-01
Chr09	irgsp1_rep	three_prime_UTR	9977330	9977420	.	+	.	Parent=Os09t0332600-01
Chr09	irgsp1_rep	three_prime_UTR	9977826	9978234	.	+	.	Parent=Os09t0332600-01
Chr09	irgsp1_rep	mRNA	9970574	9979350	.	-	.	ID=Os09t0332700-01;Name=Os09t0332700-01;Locus_id=Os09g0332700;Oryzabase Gene Symbol Synonym(s)=OsPDR20%2C RDR20;Note=Similar to PDR-type ABC transporter 2 (Fragment).;Transcript_evidence=AK067899 (DDBJ%2C Best hit);ORF_evidence=A3BXL8 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593);NIAS_FLcDNA=J013122C21;Oryzabase=12040;Expression=AK067899;TENOR=Os09t0332700-01;KEGG=Os09t0332700-01
Chr09	irgsp1_rep	five_prime_UTR	9979284	9979350	.	-	.	Parent=Os09t0332700-01
Chr09	irgsp1_rep	CDS	9978955	9979283	.	-	0	Parent=Os09t0332700-01
Chr09	irgsp1_rep	CDS	9978642	9978762	.	-	1	Parent=Os09t0332700-01
Chr09	irgsp1_rep	CDS	9977486	9977574	.	-	0	Parent=Os09t0332700-01
Chr09	irgsp1_rep	CDS	9977324	9977408	.	-	1	Parent=Os09t0332700-01
Chr09	irgsp1_rep	CDS	9977064	9977223	.	-	0	Parent=Os09t0332700-01
Chr09	irgsp1_rep	CDS	9976903	9976979	.	-	2	Parent=Os09t0332700-01
Chr09	irgsp1_rep	CDS	9976715	9976768	.	-	0	Parent=Os09t0332700-01
Chr09	irgsp1_rep	CDS	9976454	9976544	.	-	0	Parent=Os09t0332700-01
Chr09	irgsp1_rep	CDS	9976077	9976357	.	-	2	Parent=Os09t0332700-01
Chr09	irgsp1_rep	CDS	9971620	9971726	.	-	0	Parent=Os09t0332700-01
Chr09	irgsp1_rep	CDS	9971306	9971345	.	-	1	Parent=Os09t0332700-01
Chr09	irgsp1_rep	three_prime_UTR	9971091	9971305	.	-	.	Parent=Os09t0332700-01
Chr09	irgsp1_rep	three_prime_UTR	9970574	9970999	.	-	.	Parent=Os09t0332700-01
Chr09	irgsp1_rep	mRNA	9970574	9973070	.	-	.	ID=Os09t0332700-02;Name=Os09t0332700-02;Locus_id=Os09g0332700;Oryzabase Gene Symbol Synonym(s)=OsPDR20%2C RDR20;Note=Hypothetical conserved gene.;Transcript_evidence=AK060237 (DDBJ%2C Best hit);ORF_evidence=B8BEI2 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=ABC-2 type transporter (IPR013525);NIAS_FLcDNA=001-003-C10;Oryzabase=12040;Expression=AK060237;TENOR=Os09t0332700-02;KEGG=Os09t0332700-02
Chr09	irgsp1_rep	CDS	9972858	9973070	.	-	0	Parent=Os09t0332700-02
Chr09	irgsp1_rep	CDS	9972693	9972776	.	-	0	Parent=Os09t0332700-02
Chr09	irgsp1_rep	CDS	9972479	9972612	.	-	0	Parent=Os09t0332700-02
Chr09	irgsp1_rep	CDS	9971907	9972134	.	-	1	Parent=Os09t0332700-02
Chr09	irgsp1_rep	CDS	9971620	9971791	.	-	1	Parent=Os09t0332700-02
Chr09	irgsp1_rep	CDS	9971091	9971345	.	-	0	Parent=Os09t0332700-02
Chr09	irgsp1_rep	CDS	9970742	9970999	.	-	0	Parent=Os09t0332700-02
Chr09	irgsp1_rep	three_prime_UTR	9970574	9970741	.	-	.	Parent=Os09t0332700-02
Chr09	irgsp1_rep	mRNA	10008771	10014439	.	-	.	ID=Os09t0333000-00;Name=Os09t0333000-00;Locus_id=Os09g0333000;CGSNL Gene Symbol=PDR19;CGSNL Gene Name=PLEIOTROPIC DRUG RESISTANCE 19;Oryzabase Gene Symbol Synonym(s)=OsABCG47%2C OsPDR19;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 47%2C pleiotropic drug resistance 19;Note=ABC transporter-like domain containing protein.;Transcript_evidence=AK355919 (DDBJ);ORF_evidence=Q6EQ60 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC-2 type transporter (IPR013525),Plant PDR ABC transporter associated (IPR013581);Oryzabase=12020;TENOR=Os09t0333000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	10014274	10014439	.	-	0	Parent=Os09t0333000-00
Chr09	irgsp1_rep	CDS	10014061	10014164	.	-	2	Parent=Os09t0333000-00
Chr09	irgsp1_rep	CDS	10013821	10013977	.	-	0	Parent=Os09t0333000-00
Chr09	irgsp1_rep	CDS	10013604	10013720	.	-	2	Parent=Os09t0333000-00
Chr09	irgsp1_rep	CDS	10013377	10013519	.	-	2	Parent=Os09t0333000-00
Chr09	irgsp1_rep	CDS	10012927	10013256	.	-	0	Parent=Os09t0333000-00
Chr09	irgsp1_rep	CDS	10012390	10012680	.	-	0	Parent=Os09t0333000-00
Chr09	irgsp1_rep	CDS	10012170	10012253	.	-	0	Parent=Os09t0333000-00
Chr09	irgsp1_rep	CDS	10011953	10012086	.	-	0	Parent=Os09t0333000-00
Chr09	irgsp1_rep	CDS	10009851	10010078	.	-	1	Parent=Os09t0333000-00
Chr09	irgsp1_rep	CDS	10009564	10009735	.	-	1	Parent=Os09t0333000-00
Chr09	irgsp1_rep	CDS	10009180	10009434	.	-	0	Parent=Os09t0333000-00
Chr09	irgsp1_rep	CDS	10008838	10009095	.	-	0	Parent=Os09t0333000-00
Chr09	irgsp1_rep	three_prime_UTR	10008771	10008837	.	-	.	Parent=Os09t0333000-00
Chr09	irgsp1_rep	mRNA	10066564	10069846	.	-	.	ID=Os09t0333500-01;Name=Os09t0333500-01;Locus_id=Os09g0333500;Note=ABC transporter-like domain containing protein.;Transcript_evidence=AK072827 (DDBJ%2C Best hit);ORF_evidence=B9G300 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593);NIAS_FLcDNA=J023138L18;TENOR=Os09t0333500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	10069842	10069846	.	-	.	Parent=Os09t0333500-01
Chr09	irgsp1_rep	CDS	10069674	10069841	.	-	0	Parent=Os09t0333500-01
Chr09	irgsp1_rep	CDS	10069213	10069545	.	-	0	Parent=Os09t0333500-01
Chr09	irgsp1_rep	CDS	10068690	10068980	.	-	0	Parent=Os09t0333500-01
Chr09	irgsp1_rep	CDS	10068484	10068567	.	-	0	Parent=Os09t0333500-01
Chr09	irgsp1_rep	CDS	10068263	10068400	.	-	0	Parent=Os09t0333500-01
Chr09	irgsp1_rep	three_prime_UTR	10067717	10068262	.	-	.	Parent=Os09t0333500-01
Chr09	irgsp1_rep	three_prime_UTR	10066564	10067581	.	-	.	Parent=Os09t0333500-01
Chr09	irgsp1_rep	mRNA	10071433	10085739	.	-	.	ID=Os09t0333600-01;Name=Os09t0333600-01;Locus_id=Os09g0333600;Note=Similar to PDR-like ABC transporter (PDR4 ABC transporter).;Transcript_evidence=AK108694 (DDBJ%2C Best hit);ORF_evidence=B8BEI2 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593);NIAS_FLcDNA=002-149-F04;Expression=AK108694;TENOR=Os09t0333600-01;KEGG=Os09t0333600-01
Chr09	irgsp1_rep	five_prime_UTR	10085691	10085739	.	-	.	Parent=Os09t0333600-01
Chr09	irgsp1_rep	CDS	10085416	10085690	.	-	0	Parent=Os09t0333600-01
Chr09	irgsp1_rep	CDS	10074004	10074124	.	-	1	Parent=Os09t0333600-01
Chr09	irgsp1_rep	CDS	10072959	10073047	.	-	0	Parent=Os09t0333600-01
Chr09	irgsp1_rep	CDS	10072794	10072872	.	-	1	Parent=Os09t0333600-01
Chr09	irgsp1_rep	CDS	10072540	10072699	.	-	0	Parent=Os09t0333600-01
Chr09	irgsp1_rep	CDS	10072375	10072451	.	-	2	Parent=Os09t0333600-01
Chr09	irgsp1_rep	CDS	10072189	10072242	.	-	0	Parent=Os09t0333600-01
Chr09	irgsp1_rep	CDS	10071987	10072077	.	-	0	Parent=Os09t0333600-01
Chr09	irgsp1_rep	CDS	10071589	10071911	.	-	2	Parent=Os09t0333600-01
Chr09	irgsp1_rep	three_prime_UTR	10071433	10071588	.	-	.	Parent=Os09t0333600-01
Chr09	irgsp1_rep	mRNA	10083325	10085736	.	-	.	ID=Os09t0333600-02;Name=Os09t0333600-02;Locus_id=Os09g0333600;Note=Similar to PDR20.;Transcript_evidence=AK070409 (DDBJ%2C Best hit);ORF_evidence=A3BXL8 (UniProt);NIAS_FLcDNA=J023054N07;Expression=AK070409;TENOR=Os09t0333600-02;KEGG=Os09t0333600-02
Chr09	irgsp1_rep	five_prime_UTR	10085691	10085736	.	-	.	Parent=Os09t0333600-02
Chr09	irgsp1_rep	CDS	10085412	10085690	.	-	0	Parent=Os09t0333600-02
Chr09	irgsp1_rep	three_prime_UTR	10083325	10085411	.	-	.	Parent=Os09t0333600-02
Chr09	irgsp1_rep	mRNA	10071602	10073127	.	+	.	ID=Os09t0334050-00;Name=Os09t0334050-00;Locus_id=Os09g0334050;Note=Hypothetical gene.;Transcript_evidence=tplb0008l20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0334050-00;KEGG=Os09t0334050-00
Chr09	irgsp1_rep	five_prime_UTR	10071602	10071799	.	+	.	Parent=Os09t0334050-00
Chr09	irgsp1_rep	CDS	10071800	10072090	.	+	0	Parent=Os09t0334050-00
Chr09	irgsp1_rep	three_prime_UTR	10072091	10073127	.	+	.	Parent=Os09t0334050-00
Chr09	irgsp1_rep	mRNA	10128837	10131086	.	+	.	ID=Os09t0334500-01;Name=Os09t0334500-01;Locus_id=Os09g0334500;RAP-DB Gene Symbol Synonym(s)=WRKY74%2C OsWRKY74;RAP-DB Gene Name Synonym(s)=WRKY GENE 74%2C Rice WRKY gene74;CGSNL Gene Symbol=WRKY74;CGSNL Gene Name=WRKY GENE 74;Oryzabase Gene Symbol Synonym(s)=OsWRKY74;Oryzabase Gene Name Synonym(s)=Rice WRKY gene74;Note=WRKY transcription factor%2C Tolerance to phosphate starvation%2C Regulator of Fe starvation and cold stress;Transcript_evidence=AK065265,AY676930 (Guang Lu Ai%2C indica);ORF_evidence=Q6ERI5,Q6B6Q9 (indica);GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=WRKY domain (IPR003657);NIAS_FLcDNA=J013002K14;Manual Curation=February 10%2C 2016;Literature_PMID=26663563,16919842,Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6589;Expression=AK065265;TENOR=Os09t0334500-01;KEGG=Os09t0334500-01
Chr09	irgsp1_rep	five_prime_UTR	10128837	10129129	.	+	.	Parent=Os09t0334500-01
Chr09	irgsp1_rep	CDS	10129130	10129431	.	+	0	Parent=Os09t0334500-01
Chr09	irgsp1_rep	CDS	10129547	10129681	.	+	1	Parent=Os09t0334500-01
Chr09	irgsp1_rep	CDS	10130105	10130753	.	+	1	Parent=Os09t0334500-01
Chr09	irgsp1_rep	three_prime_UTR	10130754	10131086	.	+	.	Parent=Os09t0334500-01
Chr09	irgsp1_rep	mRNA	10131414	10133226	.	-	.	ID=Os09t0334600-00;Name=Os09t0334600-00;Locus_id=Os09g0334600;Note=Similar to CytoChrome b5.;Transcript_evidence=AK335015 (DDBJ);ORF_evidence=B6UG94 (UniProt);GO=Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome b5 (IPR001199),CytoChrome b5%2C heme-binding site (IPR018506);TENOR=Os09t0334600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	10133102	10133226	.	-	.	Parent=Os09t0334600-00
Chr09	irgsp1_rep	CDS	10133072	10133101	.	-	0	Parent=Os09t0334600-00
Chr09	irgsp1_rep	CDS	10132693	10132770	.	-	0	Parent=Os09t0334600-00
Chr09	irgsp1_rep	CDS	10132482	10132573	.	-	0	Parent=Os09t0334600-00
Chr09	irgsp1_rep	CDS	10131695	10131761	.	-	1	Parent=Os09t0334600-00
Chr09	irgsp1_rep	three_prime_UTR	10131414	10131694	.	-	.	Parent=Os09t0334600-00
Chr09	irgsp1_rep	mRNA	10152941	10157508	.	+	.	ID=Os09t0334800-01;Name=Os09t0334800-01;Locus_id=Os09g0334800;Note=Similar to protein kinase.;Transcript_evidence=AK100955 (DDBJ%2C Best hit);ORF_evidence=NP_001148178.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Legume lectin%2C beta chain%2C Mn/Ca-binding site (IPR019825);NIAS_FLcDNA=J023140A19;TENOR=Os09t0334800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	10152941	10153488	.	+	.	Parent=Os09t0334800-01
Chr09	irgsp1_rep	five_prime_UTR	10153574	10154124	.	+	.	Parent=Os09t0334800-01
Chr09	irgsp1_rep	CDS	10154125	10155599	.	+	0	Parent=Os09t0334800-01
Chr09	irgsp1_rep	CDS	10156658	10157354	.	+	1	Parent=Os09t0334800-01
Chr09	irgsp1_rep	three_prime_UTR	10157355	10157508	.	+	.	Parent=Os09t0334800-01
Chr09	irgsp1_rep	mRNA	10158597	10160954	.	-	.	ID=Os09t0334900-00;Name=Os09t0334900-00;Locus_id=Os09g0334900;Note=Ankyrin repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001175784.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683),Major facilitator superfamily domain (IPR020846);TENOR=Os09t0334900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	10160642	10160954	.	-	0	Parent=Os09t0334900-00
Chr09	irgsp1_rep	CDS	10160443	10160546	.	-	2	Parent=Os09t0334900-00
Chr09	irgsp1_rep	CDS	10159374	10159901	.	-	0	Parent=Os09t0334900-00
Chr09	irgsp1_rep	CDS	10158597	10159289	.	-	0	Parent=Os09t0334900-00
Chr09	irgsp1_rep	mRNA	10226035	10226704	.	+	.	ID=Os09t0336600-01;Name=Os09t0336600-01;Locus_id=Os09g0336600;Note=Non-protein coding transcript.;Transcript_evidence=AK062947 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-109-C04;TENOR=Os09t0336600-01
Chr09	irgsp1_rep	exon	10226035	10226704	.	+	.	Parent=Os09t0336600-01
Chr09	irgsp1_rep	mRNA	10233704	10234497	.	-	.	ID=Os09t0336775-00;Name=Os09t0336775-00;Locus_id=Os09g0336775;Note=Non-protein coding transcript.;Transcript_evidence=FP094971 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0336775-00
Chr09	irgsp1_rep	exon	10234231	10234497	.	-	.	Parent=Os09t0336775-00
Chr09	irgsp1_rep	exon	10233704	10233983	.	-	.	Parent=Os09t0336775-00
Chr09	irgsp1_rep	mRNA	10252139	10252775	.	+	.	ID=Os09t0337300-01;Name=Os09t0337300-01;Locus_id=Os09g0337300;Note=Hypothetical gene.;Transcript_evidence=AK109223 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-156-E07;Expression=AK109223;TENOR=Os09t0337300-01;KEGG=Os09t0337300-01
Chr09	irgsp1_rep	CDS	10252139	10252504	.	+	0	Parent=Os09t0337300-01
Chr09	irgsp1_rep	three_prime_UTR	10252505	10252775	.	+	.	Parent=Os09t0337300-01
Chr09	irgsp1_rep	mRNA	10252214	10254682	.	+	.	ID=Os09t0337300-02;Name=Os09t0337300-02;Locus_id=Os09g0337300;Note=Ankyrin repeat containing protein.;Transcript_evidence=AK073765 (DDBJ%2C Best hit);ORF_evidence=B8BEI8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J033070B14;Expression=AK073765;TENOR=Os09t0337300-02;KEGG=Os09t0337300-02
Chr09	irgsp1_rep	five_prime_UTR	10252214	10253087	.	+	.	Parent=Os09t0337300-02
Chr09	irgsp1_rep	CDS	10253088	10253747	.	+	0	Parent=Os09t0337300-02
Chr09	irgsp1_rep	CDS	10253854	10254597	.	+	0	Parent=Os09t0337300-02
Chr09	irgsp1_rep	three_prime_UTR	10254598	10254682	.	+	.	Parent=Os09t0337300-02
Chr09	irgsp1_rep	mRNA	10260259	10266738	.	-	.	ID=Os09t0337500-01;Name=Os09t0337500-01;Locus_id=Os09g0337500;Note=Conserved hypothetical protein.;Transcript_evidence=AK102339 (DDBJ%2C Best hit);ORF_evidence=A3BXN7 (UniProt);NIAS_FLcDNA=J033091A22;Expression=AK102339;TENOR=Os09t0337500-01;KEGG=Os09t0337500-01
Chr09	irgsp1_rep	five_prime_UTR	10265947	10266738	.	-	.	Parent=Os09t0337500-01
Chr09	irgsp1_rep	five_prime_UTR	10265174	10265295	.	-	.	Parent=Os09t0337500-01
Chr09	irgsp1_rep	five_prime_UTR	10264781	10265114	.	-	.	Parent=Os09t0337500-01
Chr09	irgsp1_rep	five_prime_UTR	10264552	10264617	.	-	.	Parent=Os09t0337500-01
Chr09	irgsp1_rep	CDS	10264489	10264551	.	-	0	Parent=Os09t0337500-01
Chr09	irgsp1_rep	CDS	10262107	10262227	.	-	0	Parent=Os09t0337500-01
Chr09	irgsp1_rep	CDS	10261779	10262026	.	-	2	Parent=Os09t0337500-01
Chr09	irgsp1_rep	CDS	10261527	10261649	.	-	0	Parent=Os09t0337500-01
Chr09	irgsp1_rep	three_prime_UTR	10261463	10261526	.	-	.	Parent=Os09t0337500-01
Chr09	irgsp1_rep	three_prime_UTR	10261290	10261382	.	-	.	Parent=Os09t0337500-01
Chr09	irgsp1_rep	three_prime_UTR	10261088	10261189	.	-	.	Parent=Os09t0337500-01
Chr09	irgsp1_rep	three_prime_UTR	10260562	10261005	.	-	.	Parent=Os09t0337500-01
Chr09	irgsp1_rep	three_prime_UTR	10260259	10260481	.	-	.	Parent=Os09t0337500-01
Chr09	irgsp1_rep	mRNA	10306223	10307407	.	+	.	ID=Os09t0338200-00;Name=Os09t0338200-00;Locus_id=Os09g0338200;Note=BTB/POZ-like domain containing protein.;Transcript_evidence=AK373710 (DDBJ);ORF_evidence=Q6ERL7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069);TENOR=Os09t0338200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	10306223	10307407	.	+	0	Parent=Os09t0338200-00
Chr09	irgsp1_rep	mRNA	10328808	10333199	.	+	.	ID=Os09t0338400-01;Name=Os09t0338400-01;Locus_id=Os09g0338400;CGSNL Gene Symbol=ISC1;CGSNL Gene Name=IRON-SULFUR CLUSTER PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsISC1;Oryzabase Gene Name Synonym(s)=Iron-sulfur cluster protein 1;Note=Similar to Cysteine desulfurase%2C mitochondrial precursor (EC 2.8.1.7) (m-Nfs1).;Transcript_evidence=AK098947 (DDBJ%2C Best hit),AK072043 (DDBJ%2C Best hit);ORF_evidence=B6T4S0 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferase%2C class V/Cysteine desulfurase (IPR000192),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424),Cysteine desulfurase%2C NifS (IPR016454),Aminotransferase class-V pyridoxal-phosphate binding site (IPR020578);NIAS_FLcDNA=J013050E08,J013108N11;Oryzabase=13416;TENOR=Os09t0338400-01
Chr09	irgsp1_rep	five_prime_UTR	10328808	10328913	.	+	.	Parent=Os09t0338400-01
Chr09	irgsp1_rep	CDS	10328914	10330290	.	+	0	Parent=Os09t0338400-01
Chr09	irgsp1_rep	three_prime_UTR	10330291	10330354	.	+	.	Parent=Os09t0338400-01
Chr09	irgsp1_rep	three_prime_UTR	10332899	10333199	.	+	.	Parent=Os09t0338400-01
Chr09	irgsp1_rep	mRNA	10328853	10330644	.	+	.	ID=Os09t0338400-02;Name=Os09t0338400-02;Locus_id=Os09g0338400;CGSNL Gene Symbol=ISC1;CGSNL Gene Name=IRON-SULFUR CLUSTER PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsISC1;Oryzabase Gene Name Synonym(s)=Iron-sulfur cluster protein 1;Note=Similar to Cysteine desulfurase%2C mitochondrial precursor (EC 2.8.1.7) (m-Nfs1).;Transcript_evidence=AK068798 (DDBJ%2C Best hit),AK059171 (DDBJ%2C Best hit);ORF_evidence=B6T4S0 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferase%2C class V/Cysteine desulfurase (IPR000192),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424),Cysteine desulfurase%2C NifS (IPR016454),Aminotransferase class-V pyridoxal-phosphate binding site (IPR020578);NIAS_FLcDNA=J013164B18,001-023-F01;Oryzabase=13416;Expression=AK068798;TENOR=Os09t0338400-02;KEGG=Os09t0338400-02 (EC:2.8.1.7)
Chr09	irgsp1_rep	five_prime_UTR	10328853	10328913	.	+	.	Parent=Os09t0338400-02
Chr09	irgsp1_rep	CDS	10328914	10330290	.	+	0	Parent=Os09t0338400-02
Chr09	irgsp1_rep	three_prime_UTR	10330291	10330644	.	+	.	Parent=Os09t0338400-02
Chr09	irgsp1_rep	mRNA	10338558	10340355	.	+	.	ID=Os09t0338500-01;Name=Os09t0338500-01;Locus_id=Os09g0338500;RAP-DB Gene Symbol Synonym(s)=OsSLD;RAP-DB Gene Name Synonym(s)=sphingolipid LCB &delta%3B8 desaturase%2C sphingolipid LCB delta8 desaturase%2C sphingolipid long-chain base delta8 desaturase;CGSNL Gene Symbol=SLD;CGSNL Gene Name=SPHINGOLIPID LCB DELTA8 DESATURASE;Oryzabase Gene Symbol Synonym(s)=OsSLD;Oryzabase Gene Name Synonym(s)=sphingolipid LCB delta8 desaturase%2C sphingolipid long-chain base delta8 desaturase;Note=Sphingolipid LCB &delta%3B8 desaturase%2C Aluminum tolerance;Transcript_evidence=AK058543;ORF_evidence=Q6ERL2;GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: oxidoreductase activity (GO:0016491),Cellular Component: integral component of membrane (GO:0016021);InterPro=CytoChrome b5-like heme/steroid binding domain superfamily (IPR036400),Fatty acid desaturase (IPR012171),CytoChrome b5-like heme/steroid binding domain (IPR001199),Fatty acid desaturase domain (IPR005804);NIAS_FLcDNA=001-017-B11;Manual Curation=August 20%2C 2020;Literature_PMID=31877922;Oryzabase=23492;Expression=AK058543;TENOR=Os09t0338500-01;KEGG=Os09t0338500-01
Chr09	irgsp1_rep	five_prime_UTR	10338558	10338667	.	+	.	Parent=Os09t0338500-01
Chr09	irgsp1_rep	CDS	10338668	10340068	.	+	0	Parent=Os09t0338500-01
Chr09	irgsp1_rep	three_prime_UTR	10340069	10340355	.	+	.	Parent=Os09t0338500-01
Chr09	irgsp1_rep	mRNA	10344855	10344922	.	+	.	ID=Os09t0338575-00;Name=Os09t0338575-00;Locus_id=Os09g0338575;Note=Non-protein coding transcript.;Transcript_evidence=X06283 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0338575-00
Chr09	irgsp1_rep	exon	10344855	10344922	.	+	.	Parent=Os09t0338575-00
Chr09	irgsp1_rep	mRNA	10350426	10350493	.	+	.	ID=Os09t0338675-00;Name=Os09t0338675-00;Locus_id=Os09g0338675;Note=Non-protein coding transcript.;Transcript_evidence=X06284 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0338675-00
Chr09	irgsp1_rep	exon	10350426	10350493	.	+	.	Parent=Os09t0338675-00
Chr09	irgsp1_rep	mRNA	10365056	10368262	.	+	.	ID=Os09t0339000-01;Name=Os09t0339000-01;Locus_id=Os09g0339000;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK065757 (DDBJ%2C Best hit);ORF_evidence=NP_001148178.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013040D23;Expression=AK065757;TENOR=Os09t0339000-01;KEGG=Os09t0339000-01
Chr09	irgsp1_rep	five_prime_UTR	10365056	10365311	.	+	.	Parent=Os09t0339000-01
Chr09	irgsp1_rep	CDS	10365312	10366144	.	+	0	Parent=Os09t0339000-01
Chr09	irgsp1_rep	CDS	10367164	10367881	.	+	1	Parent=Os09t0339000-01
Chr09	irgsp1_rep	three_prime_UTR	10367882	10368262	.	+	.	Parent=Os09t0339000-01
Chr09	irgsp1_rep	mRNA	10378522	10381850	.	-	.	ID=Os09t0339300-00;Name=Os09t0339300-00;Locus_id=Os09g0339300;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK367533 (DDBJ);ORF_evidence=Q6ZK10 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),EGF-like calcium-binding (IPR001881),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),EGF-like calcium-binding%2C conserved site (IPR018097),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os09t0339300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	10380914	10381850	.	-	0	Parent=Os09t0339300-00
Chr09	irgsp1_rep	CDS	10379819	10379968	.	-	2	Parent=Os09t0339300-00
Chr09	irgsp1_rep	CDS	10379063	10379694	.	-	2	Parent=Os09t0339300-00
Chr09	irgsp1_rep	three_prime_UTR	10378522	10379062	.	-	.	Parent=Os09t0339300-00
Chr09	irgsp1_rep	mRNA	10388116	10391400	.	-	.	ID=Os09t0339601-01;Name=Os09t0339601-01;Locus_id=Os09g0339601;Note=Hypothetical gene.;Transcript_evidence=AK288424 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090032J12;TENOR=Os09t0339601-01;KEGG=Os09t0339601-01
Chr09	irgsp1_rep	five_prime_UTR	10389993	10391400	.	-	.	Parent=Os09t0339601-01
Chr09	irgsp1_rep	CDS	10389330	10389992	.	-	0	Parent=Os09t0339601-01
Chr09	irgsp1_rep	three_prime_UTR	10388116	10389329	.	-	.	Parent=Os09t0339601-01
Chr09	irgsp1_rep	mRNA	10399806	10405265	.	+	.	ID=Os09t0339733-00;Name=Os09t0339733-00;Locus_id=Os09g0339733;Note=Non-protein coding transcript.;Transcript_evidence=tplb0061g09 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os09t0339733-00
Chr09	irgsp1_rep	exon	10399806	10400214	.	+	.	Parent=Os09t0339733-00
Chr09	irgsp1_rep	exon	10401601	10401685	.	+	.	Parent=Os09t0339733-00
Chr09	irgsp1_rep	exon	10401782	10401927	.	+	.	Parent=Os09t0339733-00
Chr09	irgsp1_rep	exon	10402137	10402431	.	+	.	Parent=Os09t0339733-00
Chr09	irgsp1_rep	exon	10403773	10404306	.	+	.	Parent=Os09t0339733-00
Chr09	irgsp1_rep	exon	10404398	10404537	.	+	.	Parent=Os09t0339733-00
Chr09	irgsp1_rep	exon	10404995	10405265	.	+	.	Parent=Os09t0339733-00
Chr09	irgsp1_rep	mRNA	10400010	10405717	.	-	.	ID=Os09t0339800-00;Name=Os09t0339800-00;Locus_id=Os09g0339800;Note=Glycerophosphoryl diester phosphodiesterase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001062919.2 (RefSeq);GO=Biological Process: glycerol metabolic process (GO:0006071),Biological Process: lipid metabolic process (GO:0006629),Molecular Function: phosphoric diester hydrolase activity (GO:0008081),Molecular Function: glycerophosphodiester phosphodiesterase activity (GO:0008889);InterPro=Glycerophosphoryl diester phosphodiesterase (IPR004129),PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain (IPR017946);TENOR=Os09t0339800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	10405546	10405717	.	-	0	Parent=Os09t0339800-00
Chr09	irgsp1_rep	CDS	10404979	10405263	.	-	2	Parent=Os09t0339800-00
Chr09	irgsp1_rep	CDS	10404408	10404520	.	-	2	Parent=Os09t0339800-00
Chr09	irgsp1_rep	CDS	10403814	10404312	.	-	0	Parent=Os09t0339800-00
Chr09	irgsp1_rep	CDS	10402145	10402429	.	-	2	Parent=Os09t0339800-00
Chr09	irgsp1_rep	CDS	10401782	10401921	.	-	2	Parent=Os09t0339800-00
Chr09	irgsp1_rep	CDS	10401638	10401685	.	-	0	Parent=Os09t0339800-00
Chr09	irgsp1_rep	CDS	10400010	10400159	.	-	0	Parent=Os09t0339800-00
Chr09	irgsp1_rep	mRNA	10448414	10452717	.	+	.	ID=Os09t0340400-01;Name=Os09t0340400-01;Locus_id=Os09g0340400;Note=Conserved hypothetical protein.;Transcript_evidence=AK072406 (DDBJ%2C Best hit),AK099247 (DDBJ%2C Best hit);ORF_evidence=Q8L4L9 (UniProt);NIAS_FLcDNA=J023081K20,J013116H20;TENOR=Os09t0340400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	10448414	10448929	.	+	.	Parent=Os09t0340400-01
Chr09	irgsp1_rep	five_prime_UTR	10449020	10449499	.	+	.	Parent=Os09t0340400-01
Chr09	irgsp1_rep	five_prime_UTR	10450817	10450886	.	+	.	Parent=Os09t0340400-01
Chr09	irgsp1_rep	five_prime_UTR	10451198	10451441	.	+	.	Parent=Os09t0340400-01
Chr09	irgsp1_rep	CDS	10451442	10451924	.	+	0	Parent=Os09t0340400-01
Chr09	irgsp1_rep	three_prime_UTR	10451925	10452717	.	+	.	Parent=Os09t0340400-01
Chr09	irgsp1_rep	mRNA	10451570	10452767	.	+	.	ID=Os09t0340400-02;Name=Os09t0340400-02;Locus_id=Os09g0340400;Note=Hypothetical conserved gene.;Transcript_evidence=AK062018 (DDBJ%2C Best hit);ORF_evidence=Q8L4L9 (UniProt);NIAS_FLcDNA=001-043-F08;Expression=AK062018;TENOR=Os09t0340400-02;KEGG=Os09t0340400-02
Chr09	irgsp1_rep	five_prime_UTR	10451570	10451570	.	+	.	Parent=Os09t0340400-02
Chr09	irgsp1_rep	CDS	10451571	10451924	.	+	0	Parent=Os09t0340400-02
Chr09	irgsp1_rep	three_prime_UTR	10451925	10452767	.	+	.	Parent=Os09t0340400-02
Chr09	irgsp1_rep	mRNA	10452793	10453083	.	-	.	ID=Os09t0340500-00;Name=Os09t0340500-00;Locus_id=Os09g0340500;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A3BXQ1 (UniProt);TENOR=Os09t0340500-00;KEGG=Os09t0340500-00
Chr09	irgsp1_rep	CDS	10452793	10453083	.	-	0	Parent=Os09t0340500-00
Chr09	irgsp1_rep	mRNA	10473329	10473623	.	-	.	ID=Os09t0341001-01;Name=Os09t0341001-01;Locus_id=Os09g0341001;Note=Non-protein coding transcript.;Transcript_evidence=AK242518 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080312P21;TENOR=Os09t0341001-01
Chr09	irgsp1_rep	exon	10473329	10473623	.	-	.	Parent=Os09t0341001-01
Chr09	irgsp1_rep	mRNA	10480172	10482005	.	+	.	ID=Os09t0341100-00;Name=Os09t0341100-00;Locus_id=Os09g0341100;Note=Similar to protein kinase.;Transcript_evidence=AK357513 (DDBJ);ORF_evidence=B7ER53 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os09t0341100-00;KEGG=Os09t0341100-00
Chr09	irgsp1_rep	CDS	10480172	10481166	.	+	0	Parent=Os09t0341100-00
Chr09	irgsp1_rep	CDS	10481291	10482005	.	+	1	Parent=Os09t0341100-00
Chr09	irgsp1_rep	mRNA	10520072	10521663	.	-	.	ID=Os09t0341500-01;Name=Os09t0341500-01;Locus_id=Os09g0341500;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK073913 (DDBJ%2C Best hit);ORF_evidence=B9G317 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033076F19;TENOR=Os09t0341500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	10521663	10521663	.	-	.	Parent=Os09t0341500-01
Chr09	irgsp1_rep	CDS	10520193	10521662	.	-	0	Parent=Os09t0341500-01
Chr09	irgsp1_rep	three_prime_UTR	10520072	10520192	.	-	.	Parent=Os09t0341500-01
Chr09	irgsp1_rep	mRNA	10522954	10524537	.	-	.	ID=Os09t0341600-01;Name=Os09t0341600-01;Locus_id=Os09g0341600;Oryzabase Gene Symbol Synonym(s)=OsFbox478%2C Os_F0354;Oryzabase Gene Name Synonym(s)=F-box protein 478;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK071689 (DDBJ%2C Best hit);ORF_evidence=B8BEK2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023112E13;Oryzabase=17248;Expression=AK071689;TENOR=Os09t0341600-01;KEGG=Os09t0341600-01
Chr09	irgsp1_rep	five_prime_UTR	10524484	10524537	.	-	.	Parent=Os09t0341600-01
Chr09	irgsp1_rep	CDS	10523080	10524483	.	-	0	Parent=Os09t0341600-01
Chr09	irgsp1_rep	three_prime_UTR	10522954	10523079	.	-	.	Parent=Os09t0341600-01
Chr09	irgsp1_rep	mRNA	10544083	10545108	.	+	.	ID=Os09t0341901-00;Name=Os09t0341901-00;Locus_id=Os09g0341901;Note=Conserved hypothetical protein.;Transcript_evidence=EU960764 (DDBJ);ORF_evidence=A3BUG6 (UniProt);TENOR=Os09t0341901-00
Chr09	irgsp1_rep	CDS	10544083	10544494	.	+	0	Parent=Os09t0341901-00
Chr09	irgsp1_rep	CDS	10544591	10544655	.	+	2	Parent=Os09t0341901-00
Chr09	irgsp1_rep	three_prime_UTR	10544656	10545108	.	+	.	Parent=Os09t0341901-00
Chr09	irgsp1_rep	mRNA	10545876	10547371	.	-	.	ID=Os09t0342000-01;Name=Os09t0342000-01;Locus_id=Os09g0342000;Oryzabase Gene Symbol Synonym(s)=OsFbox479%2C Os_F0399;Oryzabase Gene Name Synonym(s)=F-box protein 479;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK111440 (DDBJ%2C Best hit);ORF_evidence=A2Z039 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-183-A06;Oryzabase=17249;Expression=AK111440;TENOR=Os09t0342000-01;KEGG=Os09t0342000-01
Chr09	irgsp1_rep	five_prime_UTR	10547325	10547371	.	-	.	Parent=Os09t0342000-01
Chr09	irgsp1_rep	CDS	10545972	10547324	.	-	0	Parent=Os09t0342000-01
Chr09	irgsp1_rep	three_prime_UTR	10545876	10545971	.	-	.	Parent=Os09t0342000-01
Chr09	irgsp1_rep	mRNA	10605026	10621833	.	-	.	ID=Os09t0343200-01;Name=Os09t0343200-01;Locus_id=Os09g0343200;Note=Ankyrin repeat containing protein.;Transcript_evidence=AK064994 (DDBJ%2C Best hit),AK064806 (DDBJ%2C Best hit);ORF_evidence=Q6EPJ0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J013001D17,J013000D17;Expression=AK064994;TENOR=Os09t0343200-01;KEGG=Os09t0343200-01
Chr09	irgsp1_rep	five_prime_UTR	10621762	10621833	.	-	.	Parent=Os09t0343200-01
Chr09	irgsp1_rep	CDS	10621389	10621761	.	-	0	Parent=Os09t0343200-01
Chr09	irgsp1_rep	CDS	10618503	10619042	.	-	2	Parent=Os09t0343200-01
Chr09	irgsp1_rep	CDS	10606824	10607365	.	-	2	Parent=Os09t0343200-01
Chr09	irgsp1_rep	CDS	10605305	10606024	.	-	0	Parent=Os09t0343200-01
Chr09	irgsp1_rep	three_prime_UTR	10605026	10605304	.	-	.	Parent=Os09t0343200-01
Chr09	irgsp1_rep	mRNA	10621787	10623954	.	+	.	ID=Os09t0343400-01;Name=Os09t0343400-01;Locus_id=Os09g0343400;Note=Conserved hypothetical protein.;Transcript_evidence=AK099726 (DDBJ%2C Best hit);ORF_evidence=A2YVC4 (UniProt);NIAS_FLcDNA=J013089E05;TENOR=Os09t0343400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	10621787	10622298	.	+	.	Parent=Os09t0343400-01
Chr09	irgsp1_rep	CDS	10622299	10622472	.	+	0	Parent=Os09t0343400-01
Chr09	irgsp1_rep	three_prime_UTR	10622473	10623954	.	+	.	Parent=Os09t0343400-01
Chr09	irgsp1_rep	mRNA	10625773	10626731	.	-	.	ID=Os09t0343600-01;Name=Os09t0343600-01;Locus_id=Os09g0343600;Note=Non-protein coding transcript.;Transcript_evidence=AK061057 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=006-205-H07;TENOR=Os09t0343600-01
Chr09	irgsp1_rep	exon	10625773	10626731	.	-	.	Parent=Os09t0343600-01
Chr09	irgsp1_rep	mRNA	10733802	10735331	.	+	.	ID=Os09t0344400-01;Name=Os09t0344400-01;Locus_id=Os09g0344400;RAP-DB Gene Symbol Synonym(s)=OsFBX322;RAP-DB Gene Name Synonym(s)=F-box protein 322;Oryzabase Gene Symbol Synonym(s)=OsFbox481%2C Os_F0362%2C FBX322%2C OsFBX322;Oryzabase Gene Name Synonym(s)=F-box protein 481%2C F-box protein 322;Note=F-box protein%2C Negative role in defense response to radiation;Transcript_evidence=AK103540;ORF_evidence=Q6EPG9;GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box-like domain superfamily (IPR036047),F-box domain (IPR001810);NIAS_FLcDNA=J033132C04;Manual Curation=February 18%2C 2020;Literature_PMID=31479093;Oryzabase=17251;TENOR=Os09t0344400-01;Subcellular location=nucleus (GO:0005634)
Chr09	irgsp1_rep	five_prime_UTR	10733802	10733906	.	+	.	Parent=Os09t0344400-01
Chr09	irgsp1_rep	CDS	10733907	10735259	.	+	0	Parent=Os09t0344400-01
Chr09	irgsp1_rep	three_prime_UTR	10735260	10735331	.	+	.	Parent=Os09t0344400-01
Chr09	irgsp1_rep	mRNA	10740343	10741908	.	-	.	ID=Os09t0344500-01;Name=Os09t0344500-01;Locus_id=Os09g0344500;Oryzabase Gene Symbol Synonym(s)=ZRP4%2C OMT%2C ASMT%2C OsASMT1%2C ASMT1;Oryzabase Gene Name Synonym(s)=O-methyltransferase ZRP4%2C O-methyltransferase%2C N-acetylserotonin methyltransferase;Note=Similar to O-methyltransferase ZRP4 (EC 2.1.1.-) (OMT).;Transcript_evidence=AK072740 (DDBJ%2C Best hit);ORF_evidence=B4FLE0 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: O-methyltransferase activity (GO:0008171),Molecular Function: protein dimerization activity (GO:0046983);InterPro=O-methyltransferase%2C family 2 (IPR001077),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Plant methyltransferase dimerisation (IPR012967),O-methyltransferase%2C COMT%2C eukaryota (IPR016461);NIAS_FLcDNA=J023134H21;Oryzabase=20481;Expression=AK072740;TENOR=Os09t0344500-01;KEGG=Os09t0344500-01
Chr09	irgsp1_rep	five_prime_UTR	10741874	10741908	.	-	.	Parent=Os09t0344500-01
Chr09	irgsp1_rep	CDS	10741079	10741873	.	-	0	Parent=Os09t0344500-01
Chr09	irgsp1_rep	CDS	10740678	10740977	.	-	0	Parent=Os09t0344500-01
Chr09	irgsp1_rep	three_prime_UTR	10740343	10740677	.	-	.	Parent=Os09t0344500-01
Chr09	irgsp1_rep	mRNA	10749470	10749686	.	-	.	ID=Os09t0344650-01;Name=Os09t0344650-01;Locus_id=Os09g0344650;Note=Non-protein coding transcript.;Transcript_evidence=AK243484 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J100073F19;TENOR=Os09t0344650-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	exon	10749470	10749686	.	-	.	Parent=Os09t0344650-01
Chr09	irgsp1_rep	mRNA	10751518	10752279	.	+	.	ID=Os09t0344700-01;Name=Os09t0344700-01;Locus_id=Os09g0344700;Note=Conserved hypothetical protein.;Transcript_evidence=AK242438 (DDBJ%2C Best hit);ORF_evidence=NP_001062932.1 (RefSeq);NIAS_FLcDNA=J080093N22;TENOR=Os09t0344700-01;KEGG=Os09t0344700-01
Chr09	irgsp1_rep	five_prime_UTR	10751518	10751560	.	+	.	Parent=Os09t0344700-01
Chr09	irgsp1_rep	CDS	10751561	10752145	.	+	0	Parent=Os09t0344700-01
Chr09	irgsp1_rep	three_prime_UTR	10752146	10752279	.	+	.	Parent=Os09t0344700-01
Chr09	irgsp1_rep	mRNA	10763252	10768104	.	+	.	ID=Os09t0344800-01;Name=Os09t0344800-01;Locus_id=Os09g0344800;Note=Protein of unknown function DUF81 family protein.;Transcript_evidence=AK067189 (DDBJ%2C Best hit);ORF_evidence=B7EAG5 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Protein of unknown function DUF81 (IPR002781);NIAS_FLcDNA=J013096A09;Expression=AK067189;TENOR=Os09t0344800-01;KEGG=Os09t0344800-01
Chr09	irgsp1_rep	five_prime_UTR	10763252	10763421	.	+	.	Parent=Os09t0344800-01
Chr09	irgsp1_rep	five_prime_UTR	10763581	10763620	.	+	.	Parent=Os09t0344800-01
Chr09	irgsp1_rep	CDS	10763621	10763854	.	+	0	Parent=Os09t0344800-01
Chr09	irgsp1_rep	CDS	10764219	10764378	.	+	0	Parent=Os09t0344800-01
Chr09	irgsp1_rep	CDS	10765128	10765328	.	+	2	Parent=Os09t0344800-01
Chr09	irgsp1_rep	CDS	10765415	10765479	.	+	2	Parent=Os09t0344800-01
Chr09	irgsp1_rep	CDS	10765591	10765618	.	+	0	Parent=Os09t0344800-01
Chr09	irgsp1_rep	CDS	10765698	10765774	.	+	2	Parent=Os09t0344800-01
Chr09	irgsp1_rep	CDS	10765874	10765960	.	+	0	Parent=Os09t0344800-01
Chr09	irgsp1_rep	CDS	10766423	10766473	.	+	0	Parent=Os09t0344800-01
Chr09	irgsp1_rep	CDS	10766976	10767197	.	+	0	Parent=Os09t0344800-01
Chr09	irgsp1_rep	CDS	10767275	10767368	.	+	0	Parent=Os09t0344800-01
Chr09	irgsp1_rep	CDS	10767459	10767599	.	+	2	Parent=Os09t0344800-01
Chr09	irgsp1_rep	CDS	10767685	10767770	.	+	2	Parent=Os09t0344800-01
Chr09	irgsp1_rep	three_prime_UTR	10767771	10768104	.	+	.	Parent=Os09t0344800-01
Chr09	irgsp1_rep	mRNA	10763294	10768106	.	+	.	ID=Os09t0344800-02;Name=Os09t0344800-02;Locus_id=Os09g0344800;Note=Protein of unknown function DUF81 family protein.;Transcript_evidence=AK062085 (DDBJ%2C Best hit);ORF_evidence=B7EAG5 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Protein of unknown function DUF81 (IPR002781);NIAS_FLcDNA=001-044-G03;Expression=AK062085;TENOR=Os09t0344800-02;KEGG=Os09t0344800-02
Chr09	irgsp1_rep	five_prime_UTR	10763294	10763421	.	+	.	Parent=Os09t0344800-02
Chr09	irgsp1_rep	five_prime_UTR	10763584	10763620	.	+	.	Parent=Os09t0344800-02
Chr09	irgsp1_rep	CDS	10763621	10763854	.	+	0	Parent=Os09t0344800-02
Chr09	irgsp1_rep	CDS	10764219	10764378	.	+	0	Parent=Os09t0344800-02
Chr09	irgsp1_rep	CDS	10765128	10765328	.	+	2	Parent=Os09t0344800-02
Chr09	irgsp1_rep	CDS	10765415	10765479	.	+	2	Parent=Os09t0344800-02
Chr09	irgsp1_rep	CDS	10765591	10765618	.	+	0	Parent=Os09t0344800-02
Chr09	irgsp1_rep	CDS	10765698	10765774	.	+	2	Parent=Os09t0344800-02
Chr09	irgsp1_rep	CDS	10765874	10765960	.	+	0	Parent=Os09t0344800-02
Chr09	irgsp1_rep	CDS	10766423	10766473	.	+	0	Parent=Os09t0344800-02
Chr09	irgsp1_rep	CDS	10766976	10767197	.	+	0	Parent=Os09t0344800-02
Chr09	irgsp1_rep	CDS	10767275	10767368	.	+	0	Parent=Os09t0344800-02
Chr09	irgsp1_rep	CDS	10767459	10767599	.	+	2	Parent=Os09t0344800-02
Chr09	irgsp1_rep	CDS	10767685	10767770	.	+	2	Parent=Os09t0344800-02
Chr09	irgsp1_rep	three_prime_UTR	10767771	10768106	.	+	.	Parent=Os09t0344800-02
Chr09	irgsp1_rep	mRNA	10768866	10770136	.	+	.	ID=Os09t0344900-01;Name=Os09t0344900-01;Locus_id=Os09g0344900;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK060053 (DDBJ%2C Best hit);ORF_evidence=NP_001151010.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=006-305-B01;Expression=AK060053;TENOR=Os09t0344900-01;KEGG=Os09t0344900-01
Chr09	irgsp1_rep	five_prime_UTR	10768866	10768937	.	+	.	Parent=Os09t0344900-01
Chr09	irgsp1_rep	CDS	10768938	10769066	.	+	0	Parent=Os09t0344900-01
Chr09	irgsp1_rep	CDS	10769234	10769295	.	+	0	Parent=Os09t0344900-01
Chr09	irgsp1_rep	CDS	10769465	10769957	.	+	1	Parent=Os09t0344900-01
Chr09	irgsp1_rep	three_prime_UTR	10769958	10770136	.	+	.	Parent=Os09t0344900-01
Chr09	irgsp1_rep	mRNA	10769110	10770277	.	+	.	ID=Os09t0344900-02;Name=Os09t0344900-02;Locus_id=Os09g0344900;Note=Similar to protein binding protein.;Transcript_evidence=AK059922 (DDBJ%2C Best hit);ORF_evidence=NP_001151010.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=006-209-G12;Expression=AK059922;TENOR=Os09t0344900-02;KEGG=Os09t0344900-02 (EC:6.3.2.19)
Chr09	irgsp1_rep	five_prime_UTR	10769110	10769221	.	+	.	Parent=Os09t0344900-02
Chr09	irgsp1_rep	CDS	10769222	10769295	.	+	0	Parent=Os09t0344900-02
Chr09	irgsp1_rep	CDS	10769465	10769957	.	+	1	Parent=Os09t0344900-02
Chr09	irgsp1_rep	three_prime_UTR	10769958	10770277	.	+	.	Parent=Os09t0344900-02
Chr09	irgsp1_rep	mRNA	10770269	10772861	.	-	.	ID=Os09t0345000-01;Name=Os09t0345000-01;Locus_id=Os09g0345000;Note=Similar to dendritic cell-derived ubiquitin-like protein.;Transcript_evidence=AK059121 (DDBJ%2C Best hit);ORF_evidence=NP_001152582.1 (RefSeq);NIAS_FLcDNA=001-022-F03;Expression=AK059121;TENOR=Os09t0345000-01;KEGG=Os09t0345000-01
Chr09	irgsp1_rep	five_prime_UTR	10772755	10772861	.	-	.	Parent=Os09t0345000-01
Chr09	irgsp1_rep	CDS	10772712	10772754	.	-	0	Parent=Os09t0345000-01
Chr09	irgsp1_rep	CDS	10770904	10771026	.	-	2	Parent=Os09t0345000-01
Chr09	irgsp1_rep	CDS	10770689	10770808	.	-	2	Parent=Os09t0345000-01
Chr09	irgsp1_rep	CDS	10770545	10770609	.	-	2	Parent=Os09t0345000-01
Chr09	irgsp1_rep	three_prime_UTR	10770269	10770544	.	-	.	Parent=Os09t0345000-01
Chr09	irgsp1_rep	mRNA	10770145	10772762	.	-	.	ID=Os09t0345000-02;Name=Os09t0345000-02;Locus_id=Os09g0345000;Note=Similar to dendritic cell-derived ubiquitin-like protein.;Transcript_evidence=AK121772 (DDBJ%2C Best hit);ORF_evidence=NP_001152582.1 (RefSeq);NIAS_FLcDNA=J033092J09;Expression=AK121772;TENOR=Os09t0345000-02;KEGG=Os09t0345000-02
Chr09	irgsp1_rep	five_prime_UTR	10772755	10772762	.	-	.	Parent=Os09t0345000-02
Chr09	irgsp1_rep	CDS	10772712	10772754	.	-	0	Parent=Os09t0345000-02
Chr09	irgsp1_rep	CDS	10770904	10771026	.	-	2	Parent=Os09t0345000-02
Chr09	irgsp1_rep	CDS	10770689	10770808	.	-	2	Parent=Os09t0345000-02
Chr09	irgsp1_rep	CDS	10770545	10770609	.	-	2	Parent=Os09t0345000-02
Chr09	irgsp1_rep	three_prime_UTR	10770145	10770544	.	-	.	Parent=Os09t0345000-02
Chr09	irgsp1_rep	mRNA	10785144	10793869	.	+	.	ID=Os09t0345300-01;Name=Os09t0345300-01;Locus_id=Os09g0345300;Note=Similar to Receptor-like serine/threonine kinase.;Transcript_evidence=AK066121 (DDBJ%2C Best hit);ORF_evidence=Q6EQG8 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Leucine-rich repeat (IPR001611),Protein kinase-like domain (IPR011009),Malectin (IPR021720);NIAS_FLcDNA=J013057L06;Expression=AK066121;TENOR=Os09t0345300-01;KEGG=Os09t0345300-01
Chr09	irgsp1_rep	five_prime_UTR	10785144	10785209	.	+	.	Parent=Os09t0345300-01
Chr09	irgsp1_rep	CDS	10785210	10785348	.	+	0	Parent=Os09t0345300-01
Chr09	irgsp1_rep	CDS	10785965	10786118	.	+	2	Parent=Os09t0345300-01
Chr09	irgsp1_rep	CDS	10786299	10786370	.	+	1	Parent=Os09t0345300-01
Chr09	irgsp1_rep	CDS	10786552	10786620	.	+	1	Parent=Os09t0345300-01
Chr09	irgsp1_rep	CDS	10787281	10787352	.	+	1	Parent=Os09t0345300-01
Chr09	irgsp1_rep	CDS	10787441	10787512	.	+	1	Parent=Os09t0345300-01
Chr09	irgsp1_rep	CDS	10787620	10787691	.	+	1	Parent=Os09t0345300-01
Chr09	irgsp1_rep	CDS	10787779	10787850	.	+	1	Parent=Os09t0345300-01
Chr09	irgsp1_rep	CDS	10787972	10788043	.	+	1	Parent=Os09t0345300-01
Chr09	irgsp1_rep	CDS	10788144	10788215	.	+	1	Parent=Os09t0345300-01
Chr09	irgsp1_rep	CDS	10788286	10788357	.	+	1	Parent=Os09t0345300-01
Chr09	irgsp1_rep	CDS	10788677	10788748	.	+	1	Parent=Os09t0345300-01
Chr09	irgsp1_rep	CDS	10788890	10788955	.	+	1	Parent=Os09t0345300-01
Chr09	irgsp1_rep	CDS	10789337	10789402	.	+	1	Parent=Os09t0345300-01
Chr09	irgsp1_rep	CDS	10789489	10789527	.	+	1	Parent=Os09t0345300-01
Chr09	irgsp1_rep	CDS	10789638	10789696	.	+	1	Parent=Os09t0345300-01
Chr09	irgsp1_rep	CDS	10790017	10790396	.	+	2	Parent=Os09t0345300-01
Chr09	irgsp1_rep	CDS	10790480	10790675	.	+	0	Parent=Os09t0345300-01
Chr09	irgsp1_rep	CDS	10790863	10791030	.	+	2	Parent=Os09t0345300-01
Chr09	irgsp1_rep	CDS	10791469	10791605	.	+	2	Parent=Os09t0345300-01
Chr09	irgsp1_rep	three_prime_UTR	10791606	10791640	.	+	.	Parent=Os09t0345300-01
Chr09	irgsp1_rep	three_prime_UTR	10791724	10791934	.	+	.	Parent=Os09t0345300-01
Chr09	irgsp1_rep	three_prime_UTR	10792020	10792254	.	+	.	Parent=Os09t0345300-01
Chr09	irgsp1_rep	three_prime_UTR	10792681	10792831	.	+	.	Parent=Os09t0345300-01
Chr09	irgsp1_rep	three_prime_UTR	10793320	10793869	.	+	.	Parent=Os09t0345300-01
Chr09	irgsp1_rep	mRNA	10792036	10792857	.	-	.	ID=Os09t0345350-00;Name=Os09t0345350-00;Locus_id=Os09g0345350;Note=Non-protein coding transcript.;Transcript_evidence=EU949024 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0345350-00
Chr09	irgsp1_rep	exon	10792593	10792857	.	-	.	Parent=Os09t0345350-00
Chr09	irgsp1_rep	exon	10792036	10792263	.	-	.	Parent=Os09t0345350-00
Chr09	irgsp1_rep	mRNA	10797525	10798373	.	+	.	ID=Os09t0345400-00;Name=Os09t0345400-00;Locus_id=Os09g0345400;Note=Conserved hypothetical protein.;Transcript_evidence=FP098394 (DDBJ);ORF_evidence=Q6EQG7 (UniProt);TENOR=Os09t0345400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	10797525	10797795	.	+	0	Parent=Os09t0345400-00
Chr09	irgsp1_rep	CDS	10797967	10798373	.	+	2	Parent=Os09t0345400-00
Chr09	irgsp1_rep	mRNA	10801029	10802249	.	+	.	ID=Os09t0345500-00;Name=Os09t0345500-00;Locus_id=Os09g0345500;Note=HSP20-like chaperone domain containing protein.;Transcript_evidence=FP096604 (DDBJ);ORF_evidence=NP_001175790.1 (RefSeq);InterPro=Heat shock protein Hsp20 (IPR002068),HSP20-like chaperone (IPR008978);TENOR=Os09t0345500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	10801029	10801077	.	+	.	Parent=Os09t0345500-00
Chr09	irgsp1_rep	CDS	10801078	10801285	.	+	0	Parent=Os09t0345500-00
Chr09	irgsp1_rep	CDS	10801855	10802249	.	+	2	Parent=Os09t0345500-00
Chr09	irgsp1_rep	mRNA	10805607	10806360	.	-	.	ID=Os09t0345600-00;Name=Os09t0345600-00;Locus_id=Os09g0345600;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G326 (UniProt);TENOR=Os09t0345600-00
Chr09	irgsp1_rep	CDS	10806080	10806360	.	-	0	Parent=Os09t0345600-00
Chr09	irgsp1_rep	CDS	10805607	10806015	.	-	1	Parent=Os09t0345600-00
Chr09	irgsp1_rep	mRNA	10810135	10812498	.	-	.	ID=Os09t0345700-01;Name=Os09t0345700-01;Locus_id=Os09g0345700;Note=ATP-NAD kinase%2C PpnK-type domain containing protein.;Transcript_evidence=AK073719 (DDBJ%2C Best hit);ORF_evidence=B6TAB2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: NAD+ kinase activity (GO:0003951);InterPro=Inorganic polyphosphate/ATP-NAD kinase%2C predicted (IPR002504),ATP-NAD kinase%2C PpnK-type (IPR016064),ATP-NAD kinase%2C PpnK-type%2C all-beta (IPR017437),ATP-NAD kinase%2C PpnK-type%2C alpha/beta (IPR017438);NIAS_FLcDNA=J033061O07;Expression=AK073719;TENOR=Os09t0345700-01;KEGG=Os09t0345700-01
Chr09	irgsp1_rep	five_prime_UTR	10812368	10812498	.	-	.	Parent=Os09t0345700-01
Chr09	irgsp1_rep	CDS	10812245	10812367	.	-	0	Parent=Os09t0345700-01
Chr09	irgsp1_rep	CDS	10811204	10811449	.	-	0	Parent=Os09t0345700-01
Chr09	irgsp1_rep	CDS	10810993	10811073	.	-	0	Parent=Os09t0345700-01
Chr09	irgsp1_rep	CDS	10810734	10810885	.	-	0	Parent=Os09t0345700-01
Chr09	irgsp1_rep	CDS	10810288	10810663	.	-	1	Parent=Os09t0345700-01
Chr09	irgsp1_rep	three_prime_UTR	10810135	10810287	.	-	.	Parent=Os09t0345700-01
Chr09	irgsp1_rep	mRNA	10834983	10843944	.	+	.	ID=Os09t0346400-01;Name=Os09t0346400-01;Locus_id=Os09g0346400;Oryzabase Gene Symbol Synonym(s)=BIP103;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 103%2C BRI1-interacting protein 103%2C brassinosteroid receptor kinase-interacting protein 103;Note=Conserved hypothetical protein.;Transcript_evidence=AK100527 (DDBJ%2C Best hit);ORF_evidence=A2Z057 (UniProt);NIAS_FLcDNA=J023101D09;Oryzabase=13676;Expression=AK100527;TENOR=Os09t0346400-01;KEGG=Os09t0346400-01
Chr09	irgsp1_rep	five_prime_UTR	10834983	10835074	.	+	.	Parent=Os09t0346400-01
Chr09	irgsp1_rep	five_prime_UTR	10839626	10839629	.	+	.	Parent=Os09t0346400-01
Chr09	irgsp1_rep	CDS	10839630	10839995	.	+	0	Parent=Os09t0346400-01
Chr09	irgsp1_rep	CDS	10840204	10840398	.	+	0	Parent=Os09t0346400-01
Chr09	irgsp1_rep	CDS	10840498	10840677	.	+	0	Parent=Os09t0346400-01
Chr09	irgsp1_rep	CDS	10840776	10840970	.	+	0	Parent=Os09t0346400-01
Chr09	irgsp1_rep	CDS	10842480	10842578	.	+	0	Parent=Os09t0346400-01
Chr09	irgsp1_rep	CDS	10842673	10843179	.	+	0	Parent=Os09t0346400-01
Chr09	irgsp1_rep	CDS	10843289	10843630	.	+	0	Parent=Os09t0346400-01
Chr09	irgsp1_rep	three_prime_UTR	10843631	10843944	.	+	.	Parent=Os09t0346400-01
Chr09	irgsp1_rep	mRNA	10840862	10843925	.	+	.	ID=Os09t0346400-02;Name=Os09t0346400-02;Locus_id=Os09g0346400;Oryzabase Gene Symbol Synonym(s)=BIP103;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 103%2C BRI1-interacting protein 103%2C brassinosteroid receptor kinase-interacting protein 103;Note=Hypothetical conserved gene.;Transcript_evidence=AK059253 (DDBJ%2C Best hit);ORF_evidence=A2Z057 (UniProt);NIAS_FLcDNA=001-024-H05;Oryzabase=13676;Expression=AK059253;TENOR=Os09t0346400-02;KEGG=Os09t0346400-02
Chr09	irgsp1_rep	five_prime_UTR	10840862	10840862	.	+	.	Parent=Os09t0346400-02
Chr09	irgsp1_rep	CDS	10840863	10840970	.	+	0	Parent=Os09t0346400-02
Chr09	irgsp1_rep	CDS	10842480	10842578	.	+	0	Parent=Os09t0346400-02
Chr09	irgsp1_rep	CDS	10842673	10843179	.	+	0	Parent=Os09t0346400-02
Chr09	irgsp1_rep	CDS	10843289	10843630	.	+	0	Parent=Os09t0346400-02
Chr09	irgsp1_rep	three_prime_UTR	10843631	10843925	.	+	.	Parent=Os09t0346400-02
Chr09	irgsp1_rep	mRNA	10845779	10847012	.	+	.	ID=Os09t0346500-04;Name=Os09t0346500-04;Locus_id=Os09g0346500;CGSNL Gene Symbol=CAB1R;CGSNL Gene Name=CHLOROPHYLL A/B BINDING PROTEIN 1R;Oryzabase Gene Symbol Synonym(s)=cab1R%2C LHCP%2C CAB%2C OsLhcb1%2C Lhcb1%2C Cab1%2C OsCAB1%2C Lhcb1b%2C OsLhcb1b%2C CAB2R;Oryzabase Gene Name Synonym(s)="Chlorophyll a-b binding protein 1%2C chloroplast precursor"%2C "Chlorophyll a-b binding protein 1%2C chloroplast"%2C LHCII type I CAB-1%2C LHCII type I CAB%2C chlorophyll a/b-binding protein 1%2C light-harvesting chlorophyll a/b binding protein 1%2C PSII Cab1;Note=Similar to Chlorophyll a-b binding protein%2C chloroplast precursor (LHCII type I CAB) (LHCP).;Transcript_evidence=AK060851 (DDBJ%2C Best hit),AK058305 (DDBJ%2C Best hit),AK104281 (DDBJ%2C Best hit),AK104288 (DDBJ%2C Best hit),AK104350 (DDBJ%2C Best hit);ORF_evidence=P12330 (UniProt);GO=Biological Process: photosynthesis%2C light harvesting (GO:0009765),Cellular Component: membrane (GO:0016020);InterPro=Chlorophyll A-B binding protein%2C plant (IPR001344),Chlorophyll A-B binding protein (IPR022796),Chlorophyll a/b binding protein domain (IPR023329);NIAS_FLcDNA=001-034-E08,001-013-H02,001-006-D01,001-007-E05,001-034-G02;Oryzabase=7333;Expression=AK060851;TENOR=Os09t0346500-04;KEGG=Os09t0346500-04
Chr09	irgsp1_rep	five_prime_UTR	10845779	10845835	.	+	.	Parent=Os09t0346500-04
Chr09	irgsp1_rep	CDS	10845836	10846633	.	+	0	Parent=Os09t0346500-04
Chr09	irgsp1_rep	three_prime_UTR	10846634	10847012	.	+	.	Parent=Os09t0346500-04
Chr09	irgsp1_rep	mRNA	10849769	10852856	.	-	.	ID=Os09t0346600-01;Name=Os09t0346600-01;Locus_id=Os09g0346600;Note=Glucose/ribitol dehydrogenase family protein.;Transcript_evidence=AK108901 (DDBJ%2C Best hit);ORF_evidence=NP_197098.2 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=002-152-F06;Expression=AK108901;TENOR=Os09t0346600-01;KEGG=Os09t0346600-01
Chr09	irgsp1_rep	five_prime_UTR	10852781	10852856	.	-	.	Parent=Os09t0346600-01
Chr09	irgsp1_rep	CDS	10852577	10852780	.	-	0	Parent=Os09t0346600-01
Chr09	irgsp1_rep	CDS	10852368	10852434	.	-	0	Parent=Os09t0346600-01
Chr09	irgsp1_rep	CDS	10851858	10851886	.	-	2	Parent=Os09t0346600-01
Chr09	irgsp1_rep	CDS	10851569	10851777	.	-	0	Parent=Os09t0346600-01
Chr09	irgsp1_rep	CDS	10851321	10851439	.	-	1	Parent=Os09t0346600-01
Chr09	irgsp1_rep	CDS	10850812	10850916	.	-	2	Parent=Os09t0346600-01
Chr09	irgsp1_rep	CDS	10850673	10850739	.	-	2	Parent=Os09t0346600-01
Chr09	irgsp1_rep	CDS	10850110	10850263	.	-	1	Parent=Os09t0346600-01
Chr09	irgsp1_rep	CDS	10849848	10850003	.	-	0	Parent=Os09t0346600-01
Chr09	irgsp1_rep	three_prime_UTR	10849769	10849847	.	-	.	Parent=Os09t0346600-01
Chr09	irgsp1_rep	mRNA	10856539	10862749	.	-	.	ID=Os09t0346700-01;Name=Os09t0346700-01;Locus_id=Os09g0346700;CGSNL Gene Symbol=DUF810.5;CGSNL Gene Name=DUF810 FAMILY MEMBER 5;Oryzabase Gene Symbol Synonym(s)=OsDUF810.5;Oryzabase Gene Name Synonym(s)=domains of unknown function 810.5%2C DUF810 family member 5;Note=Protein of unknown function DUF810 family protein.;Transcript_evidence=AK070620 (DDBJ%2C Best hit);ORF_evidence=A2Z060 (UniProt);InterPro=Protein of unknown function DUF810 (IPR008528),Munc13 homology 1 (IPR014770),Mammalian uncoordinated homology 13%2C domain 2 (IPR014772);NIAS_FLcDNA=J023062D09;Oryzabase=22675;Expression=AK070620;TENOR=Os09t0346700-01;KEGG=Os09t0346700-01
Chr09	irgsp1_rep	five_prime_UTR	10862654	10862749	.	-	.	Parent=Os09t0346700-01
Chr09	irgsp1_rep	CDS	10862120	10862653	.	-	0	Parent=Os09t0346700-01
Chr09	irgsp1_rep	CDS	10859540	10860403	.	-	0	Parent=Os09t0346700-01
Chr09	irgsp1_rep	CDS	10858771	10859214	.	-	0	Parent=Os09t0346700-01
Chr09	irgsp1_rep	CDS	10858039	10858228	.	-	0	Parent=Os09t0346700-01
Chr09	irgsp1_rep	CDS	10857022	10857947	.	-	2	Parent=Os09t0346700-01
Chr09	irgsp1_rep	three_prime_UTR	10856539	10857021	.	-	.	Parent=Os09t0346700-01
Chr09	irgsp1_rep	mRNA	10856548	10860403	.	-	.	ID=Os09t0346700-02;Name=Os09t0346700-02;Locus_id=Os09g0346700;CGSNL Gene Symbol=DUF810.5;CGSNL Gene Name=DUF810 FAMILY MEMBER 5;Oryzabase Gene Symbol Synonym(s)=OsDUF810.5;Oryzabase Gene Name Synonym(s)=domains of unknown function 810.5%2C DUF810 family member 5;Note=Similar to predicted protein.;Transcript_evidence=AK102844 (DDBJ%2C Best hit);ORF_evidence=A2Z060 (UniProt);InterPro=Protein of unknown function DUF810 (IPR008528),Munc13 homology 1 (IPR014770),Mammalian uncoordinated homology 13%2C domain 2 (IPR014772);NIAS_FLcDNA=J033109P13;Oryzabase=22675;Expression=AK102844;TENOR=Os09t0346700-02;KEGG=Os09t0346700-02
Chr09	irgsp1_rep	CDS	10859540	10860403	.	-	0	Parent=Os09t0346700-02
Chr09	irgsp1_rep	CDS	10858771	10859214	.	-	0	Parent=Os09t0346700-02
Chr09	irgsp1_rep	CDS	10858039	10858228	.	-	0	Parent=Os09t0346700-02
Chr09	irgsp1_rep	CDS	10857022	10857947	.	-	2	Parent=Os09t0346700-02
Chr09	irgsp1_rep	three_prime_UTR	10856548	10857021	.	-	.	Parent=Os09t0346700-02
Chr09	irgsp1_rep	mRNA	10872551	10877953	.	-	.	ID=Os09t0346900-01;Name=Os09t0346900-01;Locus_id=Os09g0346900;Note=Conserved hypothetical protein.;Transcript_evidence=AK069895 (DDBJ%2C Best hit);ORF_evidence=B8BEP8 (UniProt);NIAS_FLcDNA=J023039B22;Expression=AK069895;TENOR=Os09t0346900-01;KEGG=Os09t0346900-01
Chr09	irgsp1_rep	five_prime_UTR	10877888	10877953	.	-	.	Parent=Os09t0346900-01
Chr09	irgsp1_rep	CDS	10877849	10877887	.	-	0	Parent=Os09t0346900-01
Chr09	irgsp1_rep	CDS	10876407	10876492	.	-	0	Parent=Os09t0346900-01
Chr09	irgsp1_rep	CDS	10874998	10875043	.	-	1	Parent=Os09t0346900-01
Chr09	irgsp1_rep	CDS	10874723	10874927	.	-	0	Parent=Os09t0346900-01
Chr09	irgsp1_rep	CDS	10874571	10874640	.	-	2	Parent=Os09t0346900-01
Chr09	irgsp1_rep	CDS	10874048	10874099	.	-	1	Parent=Os09t0346900-01
Chr09	irgsp1_rep	CDS	10873459	10873602	.	-	0	Parent=Os09t0346900-01
Chr09	irgsp1_rep	CDS	10873164	10873283	.	-	0	Parent=Os09t0346900-01
Chr09	irgsp1_rep	CDS	10872958	10873005	.	-	0	Parent=Os09t0346900-01
Chr09	irgsp1_rep	three_prime_UTR	10872551	10872957	.	-	.	Parent=Os09t0346900-01
Chr09	irgsp1_rep	mRNA	10893197	10893237	.	+	.	ID=Os09t0347101-00;Name=Os09t0347101-00;Locus_id=Os09g0347101;Note=Non-protein coding transcript.;Transcript_evidence=X02683 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0347101-00
Chr09	irgsp1_rep	exon	10893197	10893237	.	+	.	Parent=Os09t0347101-00
Chr09	irgsp1_rep	mRNA	10898052	10900227	.	+	.	ID=Os09t0347300-01;Name=Os09t0347300-01;Locus_id=Os09g0347300;CGSNL Gene Symbol=EXO70FX5;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX5;Oryzabase Gene Symbol Synonym(s)=OsEXO70FX5%2C OsExo70FX5%2C OrysaFX5_Exo70;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein FX5;Note=Exo70 exocyst complex subunit family protein.;Transcript_evidence=AK068895 (DDBJ%2C Best hit);ORF_evidence=A2Z063 (UniProt);GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exo70 exocyst complex subunit (IPR004140),Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=J013169E20;Oryzabase=20347;Expression=AK068895;TENOR=Os09t0347300-01;KEGG=Os09t0347300-01
Chr09	irgsp1_rep	five_prime_UTR	10898052	10898111	.	+	.	Parent=Os09t0347300-01
Chr09	irgsp1_rep	CDS	10898112	10899908	.	+	0	Parent=Os09t0347300-01
Chr09	irgsp1_rep	three_prime_UTR	10899909	10900227	.	+	.	Parent=Os09t0347300-01
Chr09	irgsp1_rep	mRNA	10903621	10903818	.	+	.	ID=Os09t0347401-00;Name=Os09t0347401-00;Locus_id=Os09g0347401;Note=Conserved hypothetical protein.;Transcript_evidence=EU954599 (DDBJ);ORF_evidence=NP_001174884.1 (RefSeq);TENOR=Os09t0347401-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	10903621	10903657	.	+	.	Parent=Os09t0347401-00
Chr09	irgsp1_rep	CDS	10903658	10903714	.	+	0	Parent=Os09t0347401-00
Chr09	irgsp1_rep	three_prime_UTR	10903715	10903818	.	+	.	Parent=Os09t0347401-00
Chr09	irgsp1_rep	mRNA	10905892	10907983	.	-	.	ID=Os09t0347500-01;Name=Os09t0347500-01;Locus_id=Os09g0347500;Note=Similar to Protein transport protein Sec61 alpha subunit isoform 2 (Sec61 alpha- 2).;Transcript_evidence=AK062048 (DDBJ%2C Best hit);ORF_evidence=Q9LLR4 (UniProt);GO=Biological Process: protein transport (GO:0015031),Cellular Component: membrane (GO:0016020),Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450);InterPro=SecY protein (IPR002208),SecY subunit domain (IPR023201);NIAS_FLcDNA=001-044-A12;Expression=AK062048;TENOR=Os09t0347500-01;KEGG=Os09t0347500-01
Chr09	irgsp1_rep	five_prime_UTR	10907982	10907983	.	-	.	Parent=Os09t0347500-01
Chr09	irgsp1_rep	CDS	10907785	10907981	.	-	0	Parent=Os09t0347500-01
Chr09	irgsp1_rep	CDS	10907338	10907692	.	-	1	Parent=Os09t0347500-01
Chr09	irgsp1_rep	CDS	10907136	10907260	.	-	0	Parent=Os09t0347500-01
Chr09	irgsp1_rep	CDS	10906884	10907019	.	-	1	Parent=Os09t0347500-01
Chr09	irgsp1_rep	CDS	10906212	10906451	.	-	0	Parent=Os09t0347500-01
Chr09	irgsp1_rep	three_prime_UTR	10905892	10906211	.	-	.	Parent=Os09t0347500-01
Chr09	irgsp1_rep	mRNA	10906211	10909687	.	+	.	ID=Os09t0347550-00;Name=Os09t0347550-00;Locus_id=Os09g0347550;Note=Hypothetical protein.;Transcript_evidence=tplb0043d18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0347550-00
Chr09	irgsp1_rep	five_prime_UTR	10906211	10906459	.	+	.	Parent=Os09t0347550-00
Chr09	irgsp1_rep	five_prime_UTR	10906890	10907025	.	+	.	Parent=Os09t0347550-00
Chr09	irgsp1_rep	five_prime_UTR	10907146	10907260	.	+	.	Parent=Os09t0347550-00
Chr09	irgsp1_rep	five_prime_UTR	10907338	10907694	.	+	.	Parent=Os09t0347550-00
Chr09	irgsp1_rep	five_prime_UTR	10907788	10908016	.	+	.	Parent=Os09t0347550-00
Chr09	irgsp1_rep	five_prime_UTR	10908185	10908358	.	+	.	Parent=Os09t0347550-00
Chr09	irgsp1_rep	CDS	10908359	10908532	.	+	0	Parent=Os09t0347550-00
Chr09	irgsp1_rep	CDS	10909564	10909644	.	+	0	Parent=Os09t0347550-00
Chr09	irgsp1_rep	three_prime_UTR	10909645	10909687	.	+	.	Parent=Os09t0347550-00
Chr09	irgsp1_rep	mRNA	10913107	10913179	.	+	.	ID=Os09t0347601-00;Name=Os09t0347601-00;Locus_id=Os09g0347601;Note=Non-protein coding transcript.;Transcript_evidence=X02683 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0347601-00
Chr09	irgsp1_rep	exon	10913107	10913179	.	+	.	Parent=Os09t0347601-00
Chr09	irgsp1_rep	mRNA	10915277	10919391	.	-	.	ID=Os09t0347700-01;Name=Os09t0347700-01;Locus_id=Os09g0347700;Oryzabase Gene Symbol Synonym(s)=SEC61;Note=Similar to Sec61p.;Transcript_evidence=AK100597 (DDBJ%2C Best hit);ORF_evidence=Q9LLR4 (UniProt);GO=Biological Process: protein transport (GO:0015031),Cellular Component: membrane (GO:0016020),Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450);InterPro=SecY protein (IPR002208),Translocon Sec61/SecY%2C plug domain (IPR019561),SecY subunit domain (IPR023201);NIAS_FLcDNA=J023107A15;Oryzabase=22003;Expression=AK100597;TENOR=Os09t0347700-01;KEGG=Os09t0347700-01
Chr09	irgsp1_rep	five_prime_UTR	10919245	10919391	.	-	.	Parent=Os09t0347700-01
Chr09	irgsp1_rep	five_prime_UTR	10918171	10918174	.	-	.	Parent=Os09t0347700-01
Chr09	irgsp1_rep	CDS	10917827	10918170	.	-	0	Parent=Os09t0347700-01
Chr09	irgsp1_rep	CDS	10917422	10917649	.	-	1	Parent=Os09t0347700-01
Chr09	irgsp1_rep	CDS	10916983	10917337	.	-	1	Parent=Os09t0347700-01
Chr09	irgsp1_rep	CDS	10916757	10916881	.	-	0	Parent=Os09t0347700-01
Chr09	irgsp1_rep	CDS	10916504	10916639	.	-	1	Parent=Os09t0347700-01
Chr09	irgsp1_rep	CDS	10915827	10916066	.	-	0	Parent=Os09t0347700-01
Chr09	irgsp1_rep	three_prime_UTR	10915277	10915826	.	-	.	Parent=Os09t0347700-01
Chr09	irgsp1_rep	mRNA	10915826	10919358	.	+	.	ID=Os09t0347750-00;Name=Os09t0347750-00;Locus_id=Os09g0347750;Note=Hypothetical protein.;Transcript_evidence=tplb0043d18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0347750-00
Chr09	irgsp1_rep	five_prime_UTR	10915826	10915890	.	+	.	Parent=Os09t0347750-00
Chr09	irgsp1_rep	CDS	10915891	10916065	.	+	0	Parent=Os09t0347750-00
Chr09	irgsp1_rep	CDS	10916503	10916600	.	+	2	Parent=Os09t0347750-00
Chr09	irgsp1_rep	three_prime_UTR	10916601	10916646	.	+	.	Parent=Os09t0347750-00
Chr09	irgsp1_rep	three_prime_UTR	10916767	10916872	.	+	.	Parent=Os09t0347750-00
Chr09	irgsp1_rep	three_prime_UTR	10916976	10917339	.	+	.	Parent=Os09t0347750-00
Chr09	irgsp1_rep	three_prime_UTR	10917425	10917653	.	+	.	Parent=Os09t0347750-00
Chr09	irgsp1_rep	three_prime_UTR	10917832	10918176	.	+	.	Parent=Os09t0347750-00
Chr09	irgsp1_rep	three_prime_UTR	10919233	10919358	.	+	.	Parent=Os09t0347750-00
Chr09	irgsp1_rep	mRNA	10922427	10926901	.	+	.	ID=Os09t0347800-01;Name=Os09t0347800-01;Locus_id=Os09g0347800;CGSNL Gene Symbol=HAG704;CGSNL Gene Name=HISTONE ACETYLTRANSFERASE HAG704;Oryzabase Gene Symbol Synonym(s)=OsHAG704;Oryzabase Gene Name Synonym(s)=Histone acetyltransferase HAG704;Note=Histone acetyltransferase type B%2C catalytic subunit domain containing protein.;Transcript_evidence=AK101995 (DDBJ%2C Best hit);ORF_evidence=NP_001105187.1 (RefSeq);GO=Biological Process: Chromatin silencing at telomere (GO:0006348),Biological Process: Chromatin modification (GO:0016568),Biological Process: histone acetylation (GO:0016573),Cellular Component: nucleus (GO:0005634),Molecular Function: histone acetyltransferase activity (GO:0004402);InterPro=Acyl-CoA N-acyltransferase (IPR016181),Histone acetyltransferase type B%2C catalytic subunit (IPR017380),Histone acetyl transferase HAT1 N-terminal (IPR019467);NIAS_FLcDNA=J033079I19;Oryzabase=11173;Expression=AK101995;TENOR=Os09t0347800-01;KEGG=Os09t0347800-01 (EC:2.3.1.48)
Chr09	irgsp1_rep	five_prime_UTR	10922427	10922477	.	+	.	Parent=Os09t0347800-01
Chr09	irgsp1_rep	CDS	10922478	10922553	.	+	0	Parent=Os09t0347800-01
Chr09	irgsp1_rep	CDS	10923340	10923381	.	+	2	Parent=Os09t0347800-01
Chr09	irgsp1_rep	CDS	10923705	10923814	.	+	2	Parent=Os09t0347800-01
Chr09	irgsp1_rep	CDS	10923894	10923962	.	+	0	Parent=Os09t0347800-01
Chr09	irgsp1_rep	CDS	10924843	10924881	.	+	0	Parent=Os09t0347800-01
Chr09	irgsp1_rep	CDS	10924964	10925037	.	+	0	Parent=Os09t0347800-01
Chr09	irgsp1_rep	CDS	10925132	10925198	.	+	1	Parent=Os09t0347800-01
Chr09	irgsp1_rep	CDS	10925614	10925690	.	+	0	Parent=Os09t0347800-01
Chr09	irgsp1_rep	CDS	10925764	10925926	.	+	1	Parent=Os09t0347800-01
Chr09	irgsp1_rep	CDS	10926020	10926703	.	+	0	Parent=Os09t0347800-01
Chr09	irgsp1_rep	three_prime_UTR	10926704	10926901	.	+	.	Parent=Os09t0347800-01
Chr09	irgsp1_rep	mRNA	10928396	10930718	.	-	.	ID=Os09t0347900-01;Name=Os09t0347900-01;Locus_id=Os09g0347900;Note=Cytidylyltransferase domain containing protein.;Transcript_evidence=AK071224 (DDBJ%2C Best hit);ORF_evidence=NP_001048497.1 (RefSeq);GO=Biological Process: biosynthetic process (GO:0009058),Biological Process: NAD biosynthetic process (GO:0009435),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=Cytidylyltransferase (IPR004820),Probable nicotinate-nucleotide adenylyltransferase (IPR005248),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J023087B12;TENOR=Os09t0347900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	10930492	10930718	.	-	.	Parent=Os09t0347900-01
Chr09	irgsp1_rep	five_prime_UTR	10930318	10930395	.	-	.	Parent=Os09t0347900-01
Chr09	irgsp1_rep	five_prime_UTR	10930026	10930199	.	-	.	Parent=Os09t0347900-01
Chr09	irgsp1_rep	CDS	10929942	10930025	.	-	0	Parent=Os09t0347900-01
Chr09	irgsp1_rep	CDS	10929775	10929859	.	-	0	Parent=Os09t0347900-01
Chr09	irgsp1_rep	CDS	10929594	10929673	.	-	2	Parent=Os09t0347900-01
Chr09	irgsp1_rep	CDS	10929348	10929453	.	-	0	Parent=Os09t0347900-01
Chr09	irgsp1_rep	CDS	10929233	10929252	.	-	2	Parent=Os09t0347900-01
Chr09	irgsp1_rep	three_prime_UTR	10928396	10929232	.	-	.	Parent=Os09t0347900-01
Chr09	irgsp1_rep	mRNA	10936863	10947944	.	+	.	ID=Os09t0348400-00;Name=Os09t0348400-00;Locus_id=Os09g0348400;CGSNL Gene Symbol=RLCK263;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 263;Oryzabase Gene Symbol Synonym(s)=OsRLCK263;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 263;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6ES06 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635),Malectin-like carbohydrate-binding domain (IPR024788);Oryzabase=18953;TENOR=Os09t0348400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	10936863	10936932	.	+	0	Parent=Os09t0348400-00
Chr09	irgsp1_rep	CDS	10937024	10937270	.	+	2	Parent=Os09t0348400-00
Chr09	irgsp1_rep	CDS	10937323	10937586	.	+	1	Parent=Os09t0348400-00
Chr09	irgsp1_rep	CDS	10938481	10938944	.	+	1	Parent=Os09t0348400-00
Chr09	irgsp1_rep	CDS	10945436	10945689	.	+	2	Parent=Os09t0348400-00
Chr09	irgsp1_rep	CDS	10945888	10946014	.	+	0	Parent=Os09t0348400-00
Chr09	irgsp1_rep	CDS	10946309	10946377	.	+	2	Parent=Os09t0348400-00
Chr09	irgsp1_rep	CDS	10946842	10946893	.	+	2	Parent=Os09t0348400-00
Chr09	irgsp1_rep	CDS	10947249	10947308	.	+	1	Parent=Os09t0348400-00
Chr09	irgsp1_rep	CDS	10947539	10947944	.	+	1	Parent=Os09t0348400-00
Chr09	irgsp1_rep	mRNA	10956083	10965501	.	+	.	ID=Os09t0348600-00;Name=Os09t0348600-00;Locus_id=Os09g0348600;CGSNL Gene Symbol=RLCK264;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 264;Oryzabase Gene Symbol Synonym(s)=OsRLCK264;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 264;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6ES01 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635),Malectin-like carbohydrate-binding domain (IPR024788);Oryzabase=18954;TENOR=Os09t0348600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	10956083	10956149	.	+	0	Parent=Os09t0348600-00
Chr09	irgsp1_rep	CDS	10956329	10956872	.	+	2	Parent=Os09t0348600-00
Chr09	irgsp1_rep	CDS	10959463	10959926	.	+	1	Parent=Os09t0348600-00
Chr09	irgsp1_rep	CDS	10963485	10963738	.	+	2	Parent=Os09t0348600-00
Chr09	irgsp1_rep	CDS	10963936	10964062	.	+	0	Parent=Os09t0348600-00
Chr09	irgsp1_rep	CDS	10964830	10964866	.	+	2	Parent=Os09t0348600-00
Chr09	irgsp1_rep	CDS	10965102	10965501	.	+	1	Parent=Os09t0348600-00
Chr09	irgsp1_rep	mRNA	10964864	10969484	.	-	.	ID=Os09t0348766-01;Name=Os09t0348766-01;Locus_id=Os09g0348766;Note=Hypothetical gene.;Transcript_evidence=AK288672 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090059D11;TENOR=Os09t0348766-01;KEGG=Os09t0348766-01
Chr09	irgsp1_rep	five_prime_UTR	10965531	10969484	.	-	.	Parent=Os09t0348766-01
Chr09	irgsp1_rep	CDS	10965285	10965530	.	-	0	Parent=Os09t0348766-01
Chr09	irgsp1_rep	three_prime_UTR	10964864	10965284	.	-	.	Parent=Os09t0348766-01
Chr09	irgsp1_rep	mRNA	10992178	10994812	.	-	.	ID=Os09t0349100-00;Name=Os09t0349100-00;Locus_id=Os09g0349100;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=BT038239 (DDBJ);ORF_evidence=B9G339 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os09t0349100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	10994794	10994812	.	-	.	Parent=Os09t0349100-00
Chr09	irgsp1_rep	CDS	10994612	10994793	.	-	0	Parent=Os09t0349100-00
Chr09	irgsp1_rep	CDS	10994252	10994492	.	-	1	Parent=Os09t0349100-00
Chr09	irgsp1_rep	CDS	10993931	10994057	.	-	0	Parent=Os09t0349100-00
Chr09	irgsp1_rep	CDS	10993573	10993641	.	-	2	Parent=Os09t0349100-00
Chr09	irgsp1_rep	CDS	10993093	10993282	.	-	2	Parent=Os09t0349100-00
Chr09	irgsp1_rep	CDS	10992179	10992575	.	-	1	Parent=Os09t0349100-00
Chr09	irgsp1_rep	three_prime_UTR	10992178	10992178	.	-	.	Parent=Os09t0349100-00
Chr09	irgsp1_rep	mRNA	11022699	11026059	.	+	.	ID=Os09t0349600-01;Name=Os09t0349600-01;Locus_id=Os09g0349600;Note=Malectin-like carbohydrate-binding domain domain containing protein.;Transcript_evidence=AK289030 (DDBJ%2C Best hit);ORF_evidence=Q6ERY7 (UniProt);InterPro=Malectin-like carbohydrate-binding domain (IPR024788);NIAS_FLcDNA=J090091B19;TENOR=Os09t0349600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	11022699	11023941	.	+	.	Parent=Os09t0349600-01
Chr09	irgsp1_rep	CDS	11023942	11024502	.	+	0	Parent=Os09t0349600-01
Chr09	irgsp1_rep	three_prime_UTR	11024503	11026059	.	+	.	Parent=Os09t0349600-01
Chr09	irgsp1_rep	mRNA	11030944	11031305	.	-	.	ID=Os09t0349650-00;Name=Os09t0349650-00;Locus_id=Os09g0349650;Note=Similar to OsD305.;Transcript_evidence=CT835878 (DDBJ%2C Best hit);ORF_evidence=Q948R2 (UniProt);TENOR=Os09t0349650-00;KEGG=Os09t0349650-00
Chr09	irgsp1_rep	CDS	11031186	11031305	.	-	0	Parent=Os09t0349650-00
Chr09	irgsp1_rep	three_prime_UTR	11030944	11031185	.	-	.	Parent=Os09t0349650-00
Chr09	irgsp1_rep	mRNA	11031779	11031887	.	+	.	ID=Os09t0349675-00;Name=Os09t0349675-00;Locus_id=Os09g0349675;Note=Non-protein coding transcript.;Transcript_evidence=AM939985 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0349675-00
Chr09	irgsp1_rep	exon	11031779	11031887	.	+	.	Parent=Os09t0349675-00
Chr09	irgsp1_rep	mRNA	11038006	11039946	.	-	.	ID=Os09t0349700-01;Name=Os09t0349700-01;Locus_id=Os09g0349700;Note=Malectin-like carbohydrate-binding domain domain containing protein.;Transcript_evidence=AK241220 (DDBJ%2C Best hit);ORF_evidence=NP_001062953.2 (RefSeq);InterPro=Malectin-like carbohydrate-binding domain (IPR024788);NIAS_FLcDNA=J065123M23;TENOR=Os09t0349700-01;KEGG=Os09t0349700-01
Chr09	irgsp1_rep	five_prime_UTR	11039915	11039946	.	-	.	Parent=Os09t0349700-01
Chr09	irgsp1_rep	CDS	11039848	11039914	.	-	0	Parent=Os09t0349700-01
Chr09	irgsp1_rep	CDS	11038077	11038705	.	-	2	Parent=Os09t0349700-01
Chr09	irgsp1_rep	three_prime_UTR	11038006	11038076	.	-	.	Parent=Os09t0349700-01
Chr09	irgsp1_rep	mRNA	11050581	11051071	.	-	.	ID=Os09t0349800-00;Name=Os09t0349800-00;Locus_id=Os09g0349800;Note=Similar to OsD305.;Transcript_evidence=EU950799 (DDBJ);ORF_evidence=Q948R2 (UniProt);TENOR=Os09t0349800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	11050622	11051071	.	-	0	Parent=Os09t0349800-00
Chr09	irgsp1_rep	three_prime_UTR	11050581	11050621	.	-	.	Parent=Os09t0349800-00
Chr09	irgsp1_rep	mRNA	11123332	11132792	.	-	.	ID=Os09t0350900-01;Name=Os09t0350900-01;Locus_id=Os09g0350900;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK242693 (DDBJ%2C Best hit);ORF_evidence=Q948R2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635),Malectin-like carbohydrate-binding domain (IPR024788);NIAS_FLcDNA=J090035M04;TENOR=Os09t0350900-01;KEGG=Os09t0350900-01
Chr09	irgsp1_rep	five_prime_UTR	11132788	11132792	.	-	.	Parent=Os09t0350900-01
Chr09	irgsp1_rep	CDS	11132624	11132787	.	-	0	Parent=Os09t0350900-01
Chr09	irgsp1_rep	CDS	11131979	11132126	.	-	1	Parent=Os09t0350900-01
Chr09	irgsp1_rep	CDS	11131657	11131885	.	-	0	Parent=Os09t0350900-01
Chr09	irgsp1_rep	CDS	11131432	11131573	.	-	2	Parent=Os09t0350900-01
Chr09	irgsp1_rep	CDS	11131259	11131330	.	-	1	Parent=Os09t0350900-01
Chr09	irgsp1_rep	CDS	11128630	11128704	.	-	1	Parent=Os09t0350900-01
Chr09	irgsp1_rep	CDS	11126757	11126911	.	-	1	Parent=Os09t0350900-01
Chr09	irgsp1_rep	CDS	11126410	11126672	.	-	2	Parent=Os09t0350900-01
Chr09	irgsp1_rep	CDS	11126112	11126238	.	-	0	Parent=Os09t0350900-01
Chr09	irgsp1_rep	CDS	11125101	11125169	.	-	2	Parent=Os09t0350900-01
Chr09	irgsp1_rep	CDS	11124121	11124310	.	-	2	Parent=Os09t0350900-01
Chr09	irgsp1_rep	CDS	11123595	11123988	.	-	1	Parent=Os09t0350900-01
Chr09	irgsp1_rep	three_prime_UTR	11123332	11123594	.	-	.	Parent=Os09t0350900-01
Chr09	irgsp1_rep	mRNA	11171639	11178687	.	-	.	ID=Os09t0351700-00;Name=Os09t0351700-00;Locus_id=Os09g0351700;CGSNL Gene Symbol=RLCK265;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 265;Oryzabase Gene Symbol Synonym(s)=OsRLCK265;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 265;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G345 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635),Malectin-like carbohydrate-binding domain (IPR024788);Oryzabase=18955;TENOR=Os09t0351700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	11178129	11178687	.	-	0	Parent=Os09t0351700-00
Chr09	irgsp1_rep	CDS	11172985	11173235	.	-	2	Parent=Os09t0351700-00
Chr09	irgsp1_rep	CDS	11172741	11172867	.	-	0	Parent=Os09t0351700-00
Chr09	irgsp1_rep	CDS	11172441	11172551	.	-	2	Parent=Os09t0351700-00
Chr09	irgsp1_rep	CDS	11172113	11172302	.	-	2	Parent=Os09t0351700-00
Chr09	irgsp1_rep	CDS	11171639	11172029	.	-	1	Parent=Os09t0351700-00
Chr09	irgsp1_rep	mRNA	11180412	11181038	.	-	.	ID=Os09t0351800-00;Name=Os09t0351800-00;Locus_id=Os09g0351800;CGSNL Gene Symbol=RLCK265;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 265;Oryzabase Gene Symbol Synonym(s)=OsRLCK265;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 265;Note=Malectin-like carbohydrate-binding domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001062956.1 (RefSeq);InterPro=Malectin-like carbohydrate-binding domain (IPR024788);Oryzabase=18955;TENOR=Os09t0351800-00
Chr09	irgsp1_rep	CDS	11180412	11181038	.	-	0	Parent=Os09t0351800-00
Chr09	irgsp1_rep	mRNA	11201875	11202819	.	-	.	ID=Os09t0351900-00;Name=Os09t0351900-00;Locus_id=Os09g0351900;Note=Conserved hypothetical protein.;Transcript_evidence=BT035451 (DDBJ);ORF_evidence=Q6EQP9 (UniProt);TENOR=Os09t0351900-00
Chr09	irgsp1_rep	five_prime_UTR	11202517	11202819	.	-	.	Parent=Os09t0351900-00
Chr09	irgsp1_rep	five_prime_UTR	11202355	11202427	.	-	.	Parent=Os09t0351900-00
Chr09	irgsp1_rep	CDS	11201875	11202354	.	-	0	Parent=Os09t0351900-00
Chr09	irgsp1_rep	mRNA	11236609	11240952	.	-	.	ID=Os09t0352400-01;Name=Os09t0352400-01;Locus_id=Os09g0352400;Note=Similar to Bystin.;Transcript_evidence=AK065335 (DDBJ%2C Best hit);ORF_evidence=XP_003082160.1 (RefSeq);InterPro=Bystin (IPR007955);NIAS_FLcDNA=J013001H01;Expression=AK065335;TENOR=Os09t0352400-01;KEGG=Os09t0352400-01
Chr09	irgsp1_rep	five_prime_UTR	11240842	11240952	.	-	.	Parent=Os09t0352400-01
Chr09	irgsp1_rep	CDS	11240464	11240841	.	-	0	Parent=Os09t0352400-01
Chr09	irgsp1_rep	CDS	11240248	11240374	.	-	0	Parent=Os09t0352400-01
Chr09	irgsp1_rep	CDS	11239376	11239427	.	-	2	Parent=Os09t0352400-01
Chr09	irgsp1_rep	CDS	11238963	11239290	.	-	1	Parent=Os09t0352400-01
Chr09	irgsp1_rep	CDS	11238488	11238567	.	-	0	Parent=Os09t0352400-01
Chr09	irgsp1_rep	CDS	11238366	11238413	.	-	1	Parent=Os09t0352400-01
Chr09	irgsp1_rep	CDS	11237610	11237756	.	-	1	Parent=Os09t0352400-01
Chr09	irgsp1_rep	CDS	11237248	11237320	.	-	1	Parent=Os09t0352400-01
Chr09	irgsp1_rep	CDS	11237063	11237135	.	-	0	Parent=Os09t0352400-01
Chr09	irgsp1_rep	CDS	11236838	11236914	.	-	2	Parent=Os09t0352400-01
Chr09	irgsp1_rep	three_prime_UTR	11236609	11236837	.	-	.	Parent=Os09t0352400-01
Chr09	irgsp1_rep	mRNA	11236568	11240603	.	-	.	ID=Os09t0352400-02;Name=Os09t0352400-02;Locus_id=Os09g0352400;Note=Similar to predicted protein.;Transcript_evidence=AK061996 (DDBJ%2C Best hit);ORF_evidence=XP_003082160.1 (RefSeq);InterPro=Bystin (IPR007955);NIAS_FLcDNA=001-043-C11;Expression=AK061996;TENOR=Os09t0352400-02;KEGG=Os09t0352400-02
Chr09	irgsp1_rep	five_prime_UTR	11240602	11240603	.	-	.	Parent=Os09t0352400-02
Chr09	irgsp1_rep	CDS	11240464	11240601	.	-	0	Parent=Os09t0352400-02
Chr09	irgsp1_rep	CDS	11240248	11240374	.	-	0	Parent=Os09t0352400-02
Chr09	irgsp1_rep	CDS	11239376	11239427	.	-	2	Parent=Os09t0352400-02
Chr09	irgsp1_rep	CDS	11238963	11239290	.	-	1	Parent=Os09t0352400-02
Chr09	irgsp1_rep	CDS	11238488	11238567	.	-	0	Parent=Os09t0352400-02
Chr09	irgsp1_rep	CDS	11238366	11238413	.	-	1	Parent=Os09t0352400-02
Chr09	irgsp1_rep	CDS	11237610	11237756	.	-	1	Parent=Os09t0352400-02
Chr09	irgsp1_rep	CDS	11237248	11237320	.	-	1	Parent=Os09t0352400-02
Chr09	irgsp1_rep	CDS	11237063	11237135	.	-	0	Parent=Os09t0352400-02
Chr09	irgsp1_rep	CDS	11236838	11236914	.	-	2	Parent=Os09t0352400-02
Chr09	irgsp1_rep	three_prime_UTR	11236568	11236837	.	-	.	Parent=Os09t0352400-02
Chr09	irgsp1_rep	mRNA	11259049	11268028	.	-	.	ID=Os09t0353200-00;Name=Os09t0353200-00;Locus_id=Os09g0353200;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G348 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635),Malectin-like carbohydrate-binding domain (IPR024788);TENOR=Os09t0353200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	11267944	11268028	.	-	0	Parent=Os09t0353200-00
Chr09	irgsp1_rep	CDS	11267213	11267798	.	-	2	Parent=Os09t0353200-00
Chr09	irgsp1_rep	CDS	11265402	11265915	.	-	1	Parent=Os09t0353200-00
Chr09	irgsp1_rep	CDS	11260397	11260523	.	-	0	Parent=Os09t0353200-00
Chr09	irgsp1_rep	CDS	11259967	11260035	.	-	2	Parent=Os09t0353200-00
Chr09	irgsp1_rep	CDS	11259663	11259852	.	-	2	Parent=Os09t0353200-00
Chr09	irgsp1_rep	CDS	11259049	11259244	.	-	1	Parent=Os09t0353200-00
Chr09	irgsp1_rep	mRNA	11288774	11291404	.	+	.	ID=Os09t0353400-00;Name=Os09t0353400-00;Locus_id=Os09g0353400;Note=Similar to Leucoanthocyanidin dioxygenase.;Transcript_evidence=AK330961 (DDBJ);ORF_evidence=B6TBV5 (UniProt);TENOR=Os09t0353400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	11288774	11289031	.	+	0	Parent=Os09t0353400-00
Chr09	irgsp1_rep	CDS	11290488	11290802	.	+	0	Parent=Os09t0353400-00
Chr09	irgsp1_rep	three_prime_UTR	11290803	11290845	.	+	.	Parent=Os09t0353400-00
Chr09	irgsp1_rep	three_prime_UTR	11291014	11291404	.	+	.	Parent=Os09t0353400-00
Chr09	irgsp1_rep	mRNA	11308997	11310729	.	+	.	ID=Os09t0353700-00;Name=Os09t0353700-00;Locus_id=Os09g0353700;Note=Similar to Leucoanthocyanidin dioxygenase.;Transcript_evidence=AK367996 (DDBJ);ORF_evidence=B6TBV5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);TENOR=Os09t0353700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	11308997	11308997	.	+	.	Parent=Os09t0353700-00
Chr09	irgsp1_rep	CDS	11308998	11309411	.	+	0	Parent=Os09t0353700-00
Chr09	irgsp1_rep	CDS	11309832	11310076	.	+	0	Parent=Os09t0353700-00
Chr09	irgsp1_rep	CDS	11310168	11310729	.	+	1	Parent=Os09t0353700-00
Chr09	irgsp1_rep	mRNA	11320344	11323083	.	+	.	ID=Os09t0354100-00;Name=Os09t0354100-00;Locus_id=Os09g0354100;Note=Similar to Leucoanthocyanidin dioxygenase.;Transcript_evidence=tplb0008d12 (Wheat FLcDNA);ORF_evidence=B6TBV5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);TENOR=Os09t0354100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	11320344	11320443	.	+	.	Parent=Os09t0354100-00
Chr09	irgsp1_rep	CDS	11320444	11320503	.	+	0	Parent=Os09t0354100-00
Chr09	irgsp1_rep	CDS	11322097	11322341	.	+	0	Parent=Os09t0354100-00
Chr09	irgsp1_rep	CDS	11322431	11322989	.	+	1	Parent=Os09t0354100-00
Chr09	irgsp1_rep	three_prime_UTR	11322990	11323083	.	+	.	Parent=Os09t0354100-00
Chr09	irgsp1_rep	mRNA	11348309	11350044	.	-	.	ID=Os09t0354300-00;Name=Os09t0354300-00;Locus_id=Os09g0354300;Note=Similar to leucoanthocyanidin dioxygenase.;Transcript_evidence=tplb0015c10 (Wheat FLcDNA);ORF_evidence=B6TBV5 (UniProt);TENOR=Os09t0354300-00;KEGG=Os09t0354300-00
Chr09	irgsp1_rep	CDS	11349790	11350044	.	-	0	Parent=Os09t0354300-00
Chr09	irgsp1_rep	CDS	11349150	11349394	.	-	0	Parent=Os09t0354300-00
Chr09	irgsp1_rep	CDS	11348971	11349055	.	-	1	Parent=Os09t0354300-00
Chr09	irgsp1_rep	three_prime_UTR	11348928	11348970	.	-	.	Parent=Os09t0354300-00
Chr09	irgsp1_rep	three_prime_UTR	11348309	11348734	.	-	.	Parent=Os09t0354300-00
Chr09	irgsp1_rep	mRNA	11374859	11375352	.	-	.	ID=Os09t0354900-01;Name=Os09t0354900-01;Locus_id=Os09g0354900;Note=Conserved hypothetical protein.;Transcript_evidence=AK069410 (DDBJ%2C Best hit);ORF_evidence=A2ZJ15 (UniProt);NIAS_FLcDNA=J023015O11;TENOR=Os09t0354900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	11375351	11375352	.	-	.	Parent=Os09t0354900-01
Chr09	irgsp1_rep	CDS	11374946	11375350	.	-	0	Parent=Os09t0354900-01
Chr09	irgsp1_rep	three_prime_UTR	11374859	11374945	.	-	.	Parent=Os09t0354900-01
Chr09	irgsp1_rep	mRNA	11387149	11394959	.	+	.	ID=Os09t0355400-01;Name=Os09t0355400-01;Locus_id=Os09g0355400;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK099784 (DDBJ%2C Best hit);ORF_evidence=B8BES0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Malectin-like carbohydrate-binding domain (IPR024788);NIAS_FLcDNA=J013096C22;Expression=AK099784;TENOR=Os09t0355400-01;KEGG=Os09t0355400-01
Chr09	irgsp1_rep	five_prime_UTR	11387149	11387268	.	+	.	Parent=Os09t0355400-01
Chr09	irgsp1_rep	CDS	11387269	11387350	.	+	0	Parent=Os09t0355400-01
Chr09	irgsp1_rep	CDS	11388885	11389449	.	+	2	Parent=Os09t0355400-01
Chr09	irgsp1_rep	CDS	11389543	11390036	.	+	1	Parent=Os09t0355400-01
Chr09	irgsp1_rep	CDS	11390886	11391021	.	+	2	Parent=Os09t0355400-01
Chr09	irgsp1_rep	CDS	11391114	11391185	.	+	1	Parent=Os09t0355400-01
Chr09	irgsp1_rep	CDS	11391268	11391339	.	+	1	Parent=Os09t0355400-01
Chr09	irgsp1_rep	CDS	11391432	11391503	.	+	1	Parent=Os09t0355400-01
Chr09	irgsp1_rep	CDS	11391929	11392077	.	+	1	Parent=Os09t0355400-01
Chr09	irgsp1_rep	CDS	11392980	11393215	.	+	2	Parent=Os09t0355400-01
Chr09	irgsp1_rep	CDS	11393418	11393544	.	+	0	Parent=Os09t0355400-01
Chr09	irgsp1_rep	CDS	11393862	11393930	.	+	2	Parent=Os09t0355400-01
Chr09	irgsp1_rep	CDS	11394023	11394212	.	+	2	Parent=Os09t0355400-01
Chr09	irgsp1_rep	CDS	11394316	11394712	.	+	1	Parent=Os09t0355400-01
Chr09	irgsp1_rep	three_prime_UTR	11394713	11394959	.	+	.	Parent=Os09t0355400-01
Chr09	irgsp1_rep	mRNA	11391986	11396236	.	+	.	ID=Os09t0355400-02;Name=Os09t0355400-02;Locus_id=Os09g0355400;Note=Similar to OsD305.;Transcript_evidence=AK105685 (DDBJ%2C Best hit);ORF_evidence=Q948R2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-201-B09;TENOR=Os09t0355400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	11391986	11392046	.	+	.	Parent=Os09t0355400-02
Chr09	irgsp1_rep	CDS	11392047	11392077	.	+	0	Parent=Os09t0355400-02
Chr09	irgsp1_rep	CDS	11392980	11393215	.	+	2	Parent=Os09t0355400-02
Chr09	irgsp1_rep	CDS	11393418	11393544	.	+	0	Parent=Os09t0355400-02
Chr09	irgsp1_rep	CDS	11393862	11393930	.	+	2	Parent=Os09t0355400-02
Chr09	irgsp1_rep	CDS	11394023	11394212	.	+	2	Parent=Os09t0355400-02
Chr09	irgsp1_rep	CDS	11394316	11394708	.	+	1	Parent=Os09t0355400-02
Chr09	irgsp1_rep	CDS	11394935	11395046	.	+	1	Parent=Os09t0355400-02
Chr09	irgsp1_rep	three_prime_UTR	11395047	11396236	.	+	.	Parent=Os09t0355400-02
Chr09	irgsp1_rep	mRNA	11427219	11435151	.	-	.	ID=Os09t0356000-00;Name=Os09t0356000-00;Locus_id=Os09g0356000;CGSNL Gene Symbol=RLCK266;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 266;Oryzabase Gene Symbol Synonym(s)=OsRLCK266%2C OsSIRK1;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 266;Note=Similar to OsD305.;Transcript_evidence=AK368497 (DDBJ);ORF_evidence=Q948R2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635),Malectin-like carbohydrate-binding domain (IPR024788);Oryzabase=18956;TENOR=Os09t0356000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	11434532	11435151	.	-	0	Parent=Os09t0356000-00
Chr09	irgsp1_rep	CDS	11432608	11433074	.	-	1	Parent=Os09t0356000-00
Chr09	irgsp1_rep	CDS	11429985	11430123	.	-	2	Parent=Os09t0356000-00
Chr09	irgsp1_rep	CDS	11429821	11429892	.	-	1	Parent=Os09t0356000-00
Chr09	irgsp1_rep	CDS	11429583	11429660	.	-	1	Parent=Os09t0356000-00
Chr09	irgsp1_rep	CDS	11429328	11429485	.	-	1	Parent=Os09t0356000-00
Chr09	irgsp1_rep	CDS	11428974	11429236	.	-	2	Parent=Os09t0356000-00
Chr09	irgsp1_rep	CDS	11428609	11428735	.	-	0	Parent=Os09t0356000-00
Chr09	irgsp1_rep	CDS	11428165	11428233	.	-	2	Parent=Os09t0356000-00
Chr09	irgsp1_rep	CDS	11427823	11428015	.	-	2	Parent=Os09t0356000-00
Chr09	irgsp1_rep	CDS	11427220	11427613	.	-	1	Parent=Os09t0356000-00
Chr09	irgsp1_rep	three_prime_UTR	11427219	11427219	.	-	.	Parent=Os09t0356000-00
Chr09	irgsp1_rep	mRNA	11441959	11444517	.	-	.	ID=Os09t0356100-01;Name=Os09t0356100-01;Locus_id=Os09g0356100;Note=Similar to H1005F08.16 protein.;Transcript_evidence=AK068014 (DDBJ%2C Best hit);ORF_evidence=Q01MM8 (UniProt);NIAS_FLcDNA=J013130K04;TENOR=Os09t0356100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	11444202	11444517	.	-	.	Parent=Os09t0356100-01
Chr09	irgsp1_rep	CDS	11444190	11444201	.	-	0	Parent=Os09t0356100-01
Chr09	irgsp1_rep	CDS	11443433	11444074	.	-	0	Parent=Os09t0356100-01
Chr09	irgsp1_rep	three_prime_UTR	11442405	11443432	.	-	.	Parent=Os09t0356100-01
Chr09	irgsp1_rep	three_prime_UTR	11441959	11442293	.	-	.	Parent=Os09t0356100-01
Chr09	irgsp1_rep	mRNA	11447722	11459099	.	+	.	ID=Os09t0356200-01;Name=Os09t0356200-01;Locus_id=Os09g0356200;Note=Malectin-like carbohydrate-binding domain domain containing protein.;Transcript_evidence=AK111655 (DDBJ%2C Best hit);ORF_evidence=B8BES0 (UniProt);InterPro=Malectin-like carbohydrate-binding domain (IPR024788);NIAS_FLcDNA=J013151C10;TENOR=Os09t0356200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	11447722	11447764	.	+	.	Parent=Os09t0356200-01
Chr09	irgsp1_rep	CDS	11447765	11447852	.	+	0	Parent=Os09t0356200-01
Chr09	irgsp1_rep	CDS	11449572	11449858	.	+	2	Parent=Os09t0356200-01
Chr09	irgsp1_rep	three_prime_UTR	11449859	11450137	.	+	.	Parent=Os09t0356200-01
Chr09	irgsp1_rep	three_prime_UTR	11452945	11453449	.	+	.	Parent=Os09t0356200-01
Chr09	irgsp1_rep	three_prime_UTR	11454654	11455008	.	+	.	Parent=Os09t0356200-01
Chr09	irgsp1_rep	three_prime_UTR	11455108	11455176	.	+	.	Parent=Os09t0356200-01
Chr09	irgsp1_rep	three_prime_UTR	11455263	11455334	.	+	.	Parent=Os09t0356200-01
Chr09	irgsp1_rep	three_prime_UTR	11455675	11455823	.	+	.	Parent=Os09t0356200-01
Chr09	irgsp1_rep	three_prime_UTR	11456138	11456364	.	+	.	Parent=Os09t0356200-01
Chr09	irgsp1_rep	three_prime_UTR	11457188	11457314	.	+	.	Parent=Os09t0356200-01
Chr09	irgsp1_rep	three_prime_UTR	11457981	11458049	.	+	.	Parent=Os09t0356200-01
Chr09	irgsp1_rep	three_prime_UTR	11458120	11458309	.	+	.	Parent=Os09t0356200-01
Chr09	irgsp1_rep	three_prime_UTR	11458506	11459099	.	+	.	Parent=Os09t0356200-01
Chr09	irgsp1_rep	mRNA	11448447	11459828	.	-	.	ID=Os09t0356300-01;Name=Os09t0356300-01;Locus_id=Os09g0356300;Note=Hypothetical conserved gene.;Transcript_evidence=AK072578 (DDBJ%2C Best hit);ORF_evidence=B8BES1 (UniProt);NIAS_FLcDNA=J023128H13;Expression=AK072578;TENOR=Os09t0356300-01;KEGG=Os09t0356300-01
Chr09	irgsp1_rep	five_prime_UTR	11459601	11459828	.	-	.	Parent=Os09t0356300-01
Chr09	irgsp1_rep	five_prime_UTR	11459383	11459490	.	-	.	Parent=Os09t0356300-01
Chr09	irgsp1_rep	five_prime_UTR	11454472	11454499	.	-	.	Parent=Os09t0356300-01
Chr09	irgsp1_rep	CDS	11454437	11454471	.	-	0	Parent=Os09t0356300-01
Chr09	irgsp1_rep	CDS	11449947	11450096	.	-	1	Parent=Os09t0356300-01
Chr09	irgsp1_rep	CDS	11449778	11449793	.	-	1	Parent=Os09t0356300-01
Chr09	irgsp1_rep	three_prime_UTR	11449732	11449777	.	-	.	Parent=Os09t0356300-01
Chr09	irgsp1_rep	three_prime_UTR	11448447	11449620	.	-	.	Parent=Os09t0356300-01
Chr09	irgsp1_rep	mRNA	11483617	11506480	.	-	.	ID=Os09t0356800-01;Name=Os09t0356800-01;Locus_id=Os09g0356800;Oryzabase Gene Name Synonym(s)=LRR receptor-like serine/threonine-protein kinase;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK120189 (DDBJ%2C Best hit);ORF_evidence=Q948R2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Malectin-like carbohydrate-binding domain (IPR024788);NIAS_FLcDNA=J013034P20;Oryzabase=22558;Expression=AK120189;TENOR=Os09t0356800-01;KEGG=Os09t0356800-01
Chr09	irgsp1_rep	five_prime_UTR	11506444	11506480	.	-	.	Parent=Os09t0356800-01
Chr09	irgsp1_rep	CDS	11506371	11506443	.	-	0	Parent=Os09t0356800-01
Chr09	irgsp1_rep	CDS	11505588	11506128	.	-	2	Parent=Os09t0356800-01
Chr09	irgsp1_rep	CDS	11493256	11493722	.	-	1	Parent=Os09t0356800-01
Chr09	irgsp1_rep	CDS	11492007	11492145	.	-	2	Parent=Os09t0356800-01
Chr09	irgsp1_rep	CDS	11491857	11491928	.	-	1	Parent=Os09t0356800-01
Chr09	irgsp1_rep	CDS	11486270	11486347	.	-	1	Parent=Os09t0356800-01
Chr09	irgsp1_rep	CDS	11485961	11486115	.	-	1	Parent=Os09t0356800-01
Chr09	irgsp1_rep	CDS	11485594	11485856	.	-	2	Parent=Os09t0356800-01
Chr09	irgsp1_rep	CDS	11485352	11485478	.	-	0	Parent=Os09t0356800-01
Chr09	irgsp1_rep	CDS	11484865	11484933	.	-	2	Parent=Os09t0356800-01
Chr09	irgsp1_rep	CDS	11484356	11484545	.	-	2	Parent=Os09t0356800-01
Chr09	irgsp1_rep	CDS	11483874	11484264	.	-	1	Parent=Os09t0356800-01
Chr09	irgsp1_rep	three_prime_UTR	11483617	11483873	.	-	.	Parent=Os09t0356800-01
Chr09	irgsp1_rep	mRNA	11530868	11533560	.	-	.	ID=Os09t0357250-00;Name=Os09t0357250-00;Locus_id=Os09g0357250;Note=Conserved hypothetical protein.;Transcript_evidence=AK068092 (DDBJ%2C Secondary hit);ORF_evidence=NP_001176995.1 (RefSeq);TENOR=Os09t0357250-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	11533560	11533560	.	-	.	Parent=Os09t0357250-00
Chr09	irgsp1_rep	CDS	11533239	11533559	.	-	0	Parent=Os09t0357250-00
Chr09	irgsp1_rep	three_prime_UTR	11531176	11533238	.	-	.	Parent=Os09t0357250-00
Chr09	irgsp1_rep	three_prime_UTR	11530868	11531109	.	-	.	Parent=Os09t0357250-00
Chr09	irgsp1_rep	mRNA	11538275	11540591	.	+	.	ID=Os09t0357300-01;Name=Os09t0357300-01;Locus_id=Os09g0357300;Note=Hypothetical protein.;Transcript_evidence=AK103726 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033138C12;TENOR=Os09t0357300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	11538275	11538275	.	+	.	Parent=Os09t0357300-01
Chr09	irgsp1_rep	CDS	11538276	11538662	.	+	0	Parent=Os09t0357300-01
Chr09	irgsp1_rep	three_prime_UTR	11538663	11539828	.	+	.	Parent=Os09t0357300-01
Chr09	irgsp1_rep	three_prime_UTR	11540033	11540109	.	+	.	Parent=Os09t0357300-01
Chr09	irgsp1_rep	three_prime_UTR	11540305	11540591	.	+	.	Parent=Os09t0357300-01
Chr09	irgsp1_rep	mRNA	11540699	11556180	.	-	.	ID=Os09t0357400-00;Name=Os09t0357400-00;Locus_id=Os09g0357400;Note=Disease resistance protein domain containing protein.;Transcript_evidence=GU245946 (DDBJ);ORF_evidence=A2Z0B0 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182),ATPase%2C AAA+ type%2C core (IPR003593);TENOR=Os09t0357400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	11555752	11556180	.	-	.	Parent=Os09t0357400-00
Chr09	irgsp1_rep	five_prime_UTR	11542862	11542863	.	-	.	Parent=Os09t0357400-00
Chr09	irgsp1_rep	CDS	11542455	11542861	.	-	0	Parent=Os09t0357400-00
Chr09	irgsp1_rep	CDS	11540747	11541806	.	-	1	Parent=Os09t0357400-00
Chr09	irgsp1_rep	three_prime_UTR	11540699	11540746	.	-	.	Parent=Os09t0357400-00
Chr09	irgsp1_rep	mRNA	11567995	11568819	.	-	.	ID=Os09t0357850-00;Name=Os09t0357850-00;Locus_id=Os09g0357850;Note=Similar to POT family domain containing protein%2C expressed.;Transcript_evidence=AK363810 (DDBJ);ORF_evidence=D8L9H8 (UniProt);InterPro=Protein of unknown function DUF538 (IPR007493);TENOR=Os09t0357850-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	11567995	11568819	.	-	0	Parent=Os09t0357850-00
Chr09	irgsp1_rep	mRNA	11576100	11576772	.	-	.	ID=Os09t0358000-00;Name=Os09t0358000-00;Locus_id=Os09g0358000;Note=Similar to OsD305.;Transcript_evidence=CT837618 (DDBJ%2C Best hit);ORF_evidence=Q948R2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009);TENOR=Os09t0358000-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	11576764	11576772	.	-	.	Parent=Os09t0358000-00
Chr09	irgsp1_rep	CDS	11576744	11576763	.	-	0	Parent=Os09t0358000-00
Chr09	irgsp1_rep	CDS	11576256	11576652	.	-	1	Parent=Os09t0358000-00
Chr09	irgsp1_rep	three_prime_UTR	11576100	11576255	.	-	.	Parent=Os09t0358000-00
Chr09	irgsp1_rep	mRNA	11576816	11576925	.	+	.	ID=Os09t0358050-00;Name=Os09t0358050-00;Locus_id=Os09g0358050;Note=Non-protein coding transcript.;Transcript_evidence=AM939985 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0358050-00
Chr09	irgsp1_rep	exon	11576816	11576925	.	+	.	Parent=Os09t0358050-00
Chr09	irgsp1_rep	mRNA	11587948	11588842	.	-	.	ID=Os09t0358100-00;Name=Os09t0358100-00;Locus_id=Os09g0358100;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A3BXZ8 (UniProt);InterPro=Malectin-like carbohydrate-binding domain (IPR024788);TENOR=Os09t0358100-00;KEGG=Os09t0358100-00
Chr09	irgsp1_rep	CDS	11588770	11588842	.	-	0	Parent=Os09t0358100-00
Chr09	irgsp1_rep	CDS	11587948	11588498	.	-	2	Parent=Os09t0358100-00
Chr09	irgsp1_rep	mRNA	11603244	11603350	.	+	.	ID=Os09t0358300-00;Name=Os09t0358300-00;Locus_id=Os09g0358300;Note=Non-protein coding transcript.;Transcript_evidence=AM939985 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0358300-00
Chr09	irgsp1_rep	exon	11603244	11603350	.	+	.	Parent=Os09t0358300-00
Chr09	irgsp1_rep	mRNA	11604046	11607329	.	+	.	ID=Os09t0358500-00;Name=Os09t0358500-00;Locus_id=Os09g0358500;Note=Hypothetical conserved gene.;Transcript_evidence=AK121355 (DDBJ%2C Secondary hit);ORF_evidence=B8ASD8 (UniProt);Expression=AK121355;TENOR=Os09t0358500-00;KEGG=Os09t0358500-00
Chr09	irgsp1_rep	five_prime_UTR	11604046	11604094	.	+	.	Parent=Os09t0358500-00
Chr09	irgsp1_rep	five_prime_UTR	11604115	11604240	.	+	.	Parent=Os09t0358500-00
Chr09	irgsp1_rep	five_prime_UTR	11604248	11604326	.	+	.	Parent=Os09t0358500-00
Chr09	irgsp1_rep	CDS	11604327	11604632	.	+	0	Parent=Os09t0358500-00
Chr09	irgsp1_rep	three_prime_UTR	11604633	11605763	.	+	.	Parent=Os09t0358500-00
Chr09	irgsp1_rep	three_prime_UTR	11605789	11606926	.	+	.	Parent=Os09t0358500-00
Chr09	irgsp1_rep	three_prime_UTR	11606982	11607329	.	+	.	Parent=Os09t0358500-00
Chr09	irgsp1_rep	mRNA	11664369	11676584	.	+	.	ID=Os09t0359500-01;Name=Os09t0359500-01;Locus_id=Os09g0359500;Note=Similar to OsD305.;Transcript_evidence=AK100557 (DDBJ%2C Best hit);ORF_evidence=Q948R2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Malectin-like carbohydrate-binding domain (IPR024788);NIAS_FLcDNA=J023104C08;TENOR=Os09t0359500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	11664369	11664413	.	+	.	Parent=Os09t0359500-01
Chr09	irgsp1_rep	CDS	11664414	11664511	.	+	0	Parent=Os09t0359500-01
Chr09	irgsp1_rep	CDS	11667332	11667801	.	+	1	Parent=Os09t0359500-01
Chr09	irgsp1_rep	CDS	11671302	11671443	.	+	2	Parent=Os09t0359500-01
Chr09	irgsp1_rep	CDS	11671524	11671595	.	+	1	Parent=Os09t0359500-01
Chr09	irgsp1_rep	CDS	11673991	11674068	.	+	1	Parent=Os09t0359500-01
Chr09	irgsp1_rep	CDS	11674189	11674396	.	+	1	Parent=Os09t0359500-01
Chr09	irgsp1_rep	three_prime_UTR	11674397	11674690	.	+	.	Parent=Os09t0359500-01
Chr09	irgsp1_rep	three_prime_UTR	11674792	11674918	.	+	.	Parent=Os09t0359500-01
Chr09	irgsp1_rep	three_prime_UTR	11675499	11675567	.	+	.	Parent=Os09t0359500-01
Chr09	irgsp1_rep	three_prime_UTR	11675682	11675871	.	+	.	Parent=Os09t0359500-01
Chr09	irgsp1_rep	three_prime_UTR	11676060	11676584	.	+	.	Parent=Os09t0359500-01
Chr09	irgsp1_rep	mRNA	11700472	11702863	.	+	.	ID=Os09t0359700-00;Name=Os09t0359700-00;Locus_id=Os09g0359700;Oryzabase Gene Symbol Synonym(s)=OsSTA223%2C STA223;Note=Similar to Syntaxin-71.;Transcript_evidence=ab initio prediction;ORF_evidence=C0L7E7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Target SNARE coiled-coil domain (IPR000727);Oryzabase=19495;TENOR=Os09t0359700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	11700472	11700621	.	+	0	Parent=Os09t0359700-00
Chr09	irgsp1_rep	CDS	11700702	11700827	.	+	0	Parent=Os09t0359700-00
Chr09	irgsp1_rep	CDS	11700980	11701153	.	+	0	Parent=Os09t0359700-00
Chr09	irgsp1_rep	CDS	11701592	11701660	.	+	0	Parent=Os09t0359700-00
Chr09	irgsp1_rep	CDS	11701765	11701809	.	+	0	Parent=Os09t0359700-00
Chr09	irgsp1_rep	CDS	11702255	11702317	.	+	0	Parent=Os09t0359700-00
Chr09	irgsp1_rep	CDS	11702837	11702863	.	+	0	Parent=Os09t0359700-00
Chr09	irgsp1_rep	mRNA	11702956	11706323	.	-	.	ID=Os09t0359800-01;Name=Os09t0359800-01;Locus_id=Os09g0359800;RAP-DB Gene Symbol Synonym(s)=OsPRMT1;RAP-DB Gene Name Synonym(s)=protein arginine methyltransferase 1;CGSNL Gene Symbol=PRMT1;CGSNL Gene Name=PROTEIN ARGININE METHYLTRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=OsPRMT1;Oryzabase Gene Name Synonym(s)=protein arginine methyltransferase 1;Note=Type I protein arginine methyltransferase;Transcript_evidence=AK099826;ORF_evidence=Q0J2C6;GO=Biological Process: protein methylation (GO:0006479),Molecular Function: methyltransferase activity (GO:0008168);InterPro=S-adenosyl-L-methionine-dependent methyltransferase (IPR029063),Protein arginine N-methyltransferase (IPR025799);NIAS_FLcDNA=J013102P20;Manual Curation=September 1%2C 2020;Literature_PMID=21853042;Oryzabase=9672;Expression=AK099826;TENOR=Os09t0359800-01;KEGG=Os09t0359800-01 (EC:2.1.1.-);Subcellular location=nucleus (GO:0005634),cytoplasm (GO:0005737)
Chr09	irgsp1_rep	five_prime_UTR	11706230	11706323	.	-	.	Parent=Os09t0359800-01
Chr09	irgsp1_rep	CDS	11706001	11706229	.	-	0	Parent=Os09t0359800-01
Chr09	irgsp1_rep	CDS	11705349	11705359	.	-	2	Parent=Os09t0359800-01
Chr09	irgsp1_rep	CDS	11705024	11705179	.	-	0	Parent=Os09t0359800-01
Chr09	irgsp1_rep	CDS	11704453	11704516	.	-	0	Parent=Os09t0359800-01
Chr09	irgsp1_rep	CDS	11704213	11704355	.	-	2	Parent=Os09t0359800-01
Chr09	irgsp1_rep	CDS	11703984	11704071	.	-	0	Parent=Os09t0359800-01
Chr09	irgsp1_rep	CDS	11703735	11703850	.	-	2	Parent=Os09t0359800-01
Chr09	irgsp1_rep	CDS	11703491	11703641	.	-	0	Parent=Os09t0359800-01
Chr09	irgsp1_rep	CDS	11703190	11703395	.	-	2	Parent=Os09t0359800-01
Chr09	irgsp1_rep	three_prime_UTR	11702956	11703189	.	-	.	Parent=Os09t0359800-01
Chr09	irgsp1_rep	mRNA	11702891	11703446	.	-	.	ID=Os09t0359800-02;Name=Os09t0359800-02;Locus_id=Os09g0359800;CGSNL Gene Symbol=PRMT1;CGSNL Gene Name=PROTEIN ARGININE METHYLTRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=OsPRMT1;Oryzabase Gene Name Synonym(s)=protein arginine methyltransferase 1;Note=Similar to cDNA clone:J013102P20%2C full insert sequence.;Transcript_evidence=AK059689 (DDBJ%2C Best hit);ORF_evidence=B7EPL4 (UniProt);NIAS_FLcDNA=001-032-A12;Oryzabase=9672;Expression=AK059689;TENOR=Os09t0359800-02;KEGG=Os09t0359800-02 (EC:2.1.1.-)
Chr09	irgsp1_rep	five_prime_UTR	11703421	11703446	.	-	.	Parent=Os09t0359800-02
Chr09	irgsp1_rep	CDS	11703190	11703420	.	-	0	Parent=Os09t0359800-02
Chr09	irgsp1_rep	three_prime_UTR	11702891	11703189	.	-	.	Parent=Os09t0359800-02
Chr09	irgsp1_rep	mRNA	11707235	11710472	.	+	.	ID=Os09t0359900-01;Name=Os09t0359900-01;Locus_id=Os09g0359900;Note=Nicotinamide N-methyltransferase%2C putative domain containing protein.;Transcript_evidence=AK105521 (DDBJ%2C Best hit);ORF_evidence=A2Z0C1 (UniProt);InterPro=Nicotinamide N-methyltransferase%2C putative (IPR019410);NIAS_FLcDNA=001-127-F10;Expression=AK105521;TENOR=Os09t0359900-01;KEGG=Os09t0359900-01
Chr09	irgsp1_rep	five_prime_UTR	11707235	11707442	.	+	.	Parent=Os09t0359900-01
Chr09	irgsp1_rep	CDS	11707443	11707610	.	+	0	Parent=Os09t0359900-01
Chr09	irgsp1_rep	CDS	11707736	11707801	.	+	0	Parent=Os09t0359900-01
Chr09	irgsp1_rep	CDS	11708425	11708491	.	+	0	Parent=Os09t0359900-01
Chr09	irgsp1_rep	CDS	11708575	11708675	.	+	2	Parent=Os09t0359900-01
Chr09	irgsp1_rep	CDS	11709072	11709116	.	+	0	Parent=Os09t0359900-01
Chr09	irgsp1_rep	CDS	11709196	11709501	.	+	0	Parent=Os09t0359900-01
Chr09	irgsp1_rep	CDS	11709595	11709697	.	+	0	Parent=Os09t0359900-01
Chr09	irgsp1_rep	CDS	11710168	11710250	.	+	2	Parent=Os09t0359900-01
Chr09	irgsp1_rep	three_prime_UTR	11710251	11710472	.	+	.	Parent=Os09t0359900-01
Chr09	irgsp1_rep	mRNA	11735362	11740217	.	+	.	ID=Os09t0360400-01;Name=Os09t0360400-01;Locus_id=Os09g0360400;Note=Uncharacterised conserved protein UCP009193 domain containing protein.;Transcript_evidence=AK071395 (DDBJ%2C Best hit);ORF_evidence=NP_001152515.1 (RefSeq);InterPro=Uncharacterised conserved protein UCP009193 (IPR016549);NIAS_FLcDNA=J023095O09;Expression=AK071395;TENOR=Os09t0360400-01;KEGG=Os09t0360400-01
Chr09	irgsp1_rep	five_prime_UTR	11735362	11735547	.	+	.	Parent=Os09t0360400-01
Chr09	irgsp1_rep	CDS	11735548	11735712	.	+	0	Parent=Os09t0360400-01
Chr09	irgsp1_rep	CDS	11737989	11738069	.	+	0	Parent=Os09t0360400-01
Chr09	irgsp1_rep	CDS	11739549	11739893	.	+	0	Parent=Os09t0360400-01
Chr09	irgsp1_rep	three_prime_UTR	11739894	11740217	.	+	.	Parent=Os09t0360400-01
Chr09	irgsp1_rep	mRNA	11743857	11749579	.	-	.	ID=Os09t0360500-01;Name=Os09t0360500-01;Locus_id=Os09g0360500;Note=Thiolase-like%2C subgroup domain containing protein.;Transcript_evidence=AK105487 (DDBJ%2C Best hit);ORF_evidence=A2Z0C3 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: metabolic process (GO:0008152),Biological Process: lipid biosynthetic process (GO:0008610),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Very-long-chain 3-ketoacyl-CoA synthase (IPR012392),FAE1/Type III polyketide synthase-like protein (IPR013601),3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (IPR013747),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);NIAS_FLcDNA=001-127-B09;Expression=AK105487;TENOR=Os09t0360500-01;KEGG=Os09t0360500-01
Chr09	irgsp1_rep	five_prime_UTR	11749534	11749579	.	-	.	Parent=Os09t0360500-01
Chr09	irgsp1_rep	CDS	11748566	11749533	.	-	0	Parent=Os09t0360500-01
Chr09	irgsp1_rep	CDS	11744099	11744579	.	-	1	Parent=Os09t0360500-01
Chr09	irgsp1_rep	three_prime_UTR	11743857	11744098	.	-	.	Parent=Os09t0360500-01
Chr09	irgsp1_rep	mRNA	11779486	11780953	.	-	.	ID=Os09t0360701-01;Name=Os09t0360701-01;Locus_id=Os09g0360701;Note=Non-protein coding transcript.;Transcript_evidence=AK288899 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090080J09;TENOR=Os09t0360701-01
Chr09	irgsp1_rep	exon	11779486	11780953	.	-	.	Parent=Os09t0360701-01
Chr09	irgsp1_rep	mRNA	11779735	11785476	.	+	.	ID=Os09t0360900-01;Name=Os09t0360900-01;Locus_id=Os09g0360900;CGSNL Gene Symbol=ABCA6;CGSNL Gene Name=ABC TRANSPORTER A FAMILY MEMBER 6;Oryzabase Gene Symbol Synonym(s)=OsABCA6;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCA subgroup member 6;Note=Conserved hypothetical protein.;Transcript_evidence=AK119274 (DDBJ%2C Best hit);ORF_evidence=B8BES4 (UniProt);NIAS_FLcDNA=001-130-B06;Oryzabase=11951;TENOR=Os09t0360900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	11779735	11780136	.	+	.	Parent=Os09t0360900-01
Chr09	irgsp1_rep	CDS	11780137	11780548	.	+	0	Parent=Os09t0360900-01
Chr09	irgsp1_rep	CDS	11780665	11780789	.	+	2	Parent=Os09t0360900-01
Chr09	irgsp1_rep	CDS	11780890	11781034	.	+	0	Parent=Os09t0360900-01
Chr09	irgsp1_rep	CDS	11781450	11781563	.	+	2	Parent=Os09t0360900-01
Chr09	irgsp1_rep	CDS	11781821	11781945	.	+	2	Parent=Os09t0360900-01
Chr09	irgsp1_rep	CDS	11782039	11782197	.	+	0	Parent=Os09t0360900-01
Chr09	irgsp1_rep	CDS	11782303	11782495	.	+	0	Parent=Os09t0360900-01
Chr09	irgsp1_rep	CDS	11782617	11782671	.	+	2	Parent=Os09t0360900-01
Chr09	irgsp1_rep	CDS	11782751	11782817	.	+	1	Parent=Os09t0360900-01
Chr09	irgsp1_rep	three_prime_UTR	11782818	11782834	.	+	.	Parent=Os09t0360900-01
Chr09	irgsp1_rep	three_prime_UTR	11782912	11783279	.	+	.	Parent=Os09t0360900-01
Chr09	irgsp1_rep	three_prime_UTR	11783364	11783564	.	+	.	Parent=Os09t0360900-01
Chr09	irgsp1_rep	three_prime_UTR	11783660	11783769	.	+	.	Parent=Os09t0360900-01
Chr09	irgsp1_rep	three_prime_UTR	11783864	11783948	.	+	.	Parent=Os09t0360900-01
Chr09	irgsp1_rep	three_prime_UTR	11784111	11784239	.	+	.	Parent=Os09t0360900-01
Chr09	irgsp1_rep	three_prime_UTR	11784331	11784436	.	+	.	Parent=Os09t0360900-01
Chr09	irgsp1_rep	three_prime_UTR	11784556	11784644	.	+	.	Parent=Os09t0360900-01
Chr09	irgsp1_rep	three_prime_UTR	11784719	11784979	.	+	.	Parent=Os09t0360900-01
Chr09	irgsp1_rep	three_prime_UTR	11785084	11785476	.	+	.	Parent=Os09t0360900-01
Chr09	irgsp1_rep	mRNA	11789256	11793153	.	-	.	ID=Os09t0361032-00;Name=Os09t0361032-00;Locus_id=Os09g0361032;Note=Non-protein coding transcript.;Transcript_evidence=tplb0027d05 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os09t0361032-00
Chr09	irgsp1_rep	exon	11792620	11793153	.	-	.	Parent=Os09t0361032-00
Chr09	irgsp1_rep	exon	11791444	11791582	.	-	.	Parent=Os09t0361032-00
Chr09	irgsp1_rep	exon	11791222	11791355	.	-	.	Parent=Os09t0361032-00
Chr09	irgsp1_rep	exon	11790900	11791026	.	-	.	Parent=Os09t0361032-00
Chr09	irgsp1_rep	exon	11790453	11790791	.	-	.	Parent=Os09t0361032-00
Chr09	irgsp1_rep	exon	11789256	11789488	.	-	.	Parent=Os09t0361032-00
Chr09	irgsp1_rep	mRNA	11790541	11793359	.	+	.	ID=Os09t0361100-01;Name=Os09t0361100-01;Locus_id=Os09g0361100;CGSNL Gene Symbol=RLCK268;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 268;Oryzabase Gene Symbol Synonym(s)=OsRLCK268;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 268;Note=Similar to Protein kinase.;Transcript_evidence=AK064216 (DDBJ%2C Best hit);ORF_evidence=B6TR03 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-104-F06;Oryzabase=17707;Expression=AK064216;TENOR=Os09t0361100-01;KEGG=Os09t0361100-01
Chr09	irgsp1_rep	CDS	11790541	11790792	.	+	0	Parent=Os09t0361100-01
Chr09	irgsp1_rep	CDS	11790901	11791036	.	+	0	Parent=Os09t0361100-01
Chr09	irgsp1_rep	CDS	11791228	11791364	.	+	2	Parent=Os09t0361100-01
Chr09	irgsp1_rep	CDS	11791452	11791575	.	+	0	Parent=Os09t0361100-01
Chr09	irgsp1_rep	CDS	11792610	11793115	.	+	2	Parent=Os09t0361100-01
Chr09	irgsp1_rep	three_prime_UTR	11793116	11793359	.	+	.	Parent=Os09t0361100-01
Chr09	irgsp1_rep	mRNA	11796046	11798919	.	+	.	ID=Os09t0361200-01;Name=Os09t0361200-01;Locus_id=Os09g0361200;Note=Similar to hypersensitive-induced response protein.;Transcript_evidence=AK288668 (DDBJ%2C Best hit);ORF_evidence=NP_001104971.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Band 7 protein (IPR001107),Stomatin (IPR001972);NIAS_FLcDNA=J090058N03;TENOR=Os09t0361200-01;KEGG=Os09t0361200-01
Chr09	irgsp1_rep	five_prime_UTR	11796046	11796149	.	+	.	Parent=Os09t0361200-01
Chr09	irgsp1_rep	five_prime_UTR	11797111	11797117	.	+	.	Parent=Os09t0361200-01
Chr09	irgsp1_rep	CDS	11797118	11797306	.	+	0	Parent=Os09t0361200-01
Chr09	irgsp1_rep	CDS	11797519	11797639	.	+	0	Parent=Os09t0361200-01
Chr09	irgsp1_rep	CDS	11797855	11797946	.	+	2	Parent=Os09t0361200-01
Chr09	irgsp1_rep	CDS	11798022	11798114	.	+	0	Parent=Os09t0361200-01
Chr09	irgsp1_rep	CDS	11798332	11798700	.	+	0	Parent=Os09t0361200-01
Chr09	irgsp1_rep	three_prime_UTR	11798701	11798919	.	+	.	Parent=Os09t0361200-01
Chr09	irgsp1_rep	mRNA	11799226	11800571	.	-	.	ID=Os09t0361300-01;Name=Os09t0361300-01;Locus_id=Os09g0361300;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK110933 (DDBJ%2C Best hit);ORF_evidence=A3BY13 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-173-F12;Oryzabase=17602;TENOR=Os09t0361300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	11800307	11800571	.	-	.	Parent=Os09t0361300-01
Chr09	irgsp1_rep	CDS	11800158	11800306	.	-	0	Parent=Os09t0361300-01
Chr09	irgsp1_rep	CDS	11799471	11799627	.	-	1	Parent=Os09t0361300-01
Chr09	irgsp1_rep	three_prime_UTR	11799226	11799470	.	-	.	Parent=Os09t0361300-01
Chr09	irgsp1_rep	mRNA	11799471	11800310	.	+	.	ID=Os09t0361333-00;Name=Os09t0361333-00;Locus_id=Os09g0361333;Note=Non-protein coding transcript.;Transcript_evidence=EU946834 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0361333-00
Chr09	irgsp1_rep	exon	11799471	11799575	.	+	.	Parent=Os09t0361333-00
Chr09	irgsp1_rep	exon	11800047	11800310	.	+	.	Parent=Os09t0361333-00
Chr09	irgsp1_rep	mRNA	11805638	11808912	.	-	.	ID=Os09t0361366-00;Name=Os09t0361366-00;Locus_id=Os09g0361366;Note=Hypothetical gene.;Transcript_evidence=BT016888 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0361366-00;KEGG=Os09t0361366-00
Chr09	irgsp1_rep	five_prime_UTR	11808394	11808912	.	-	.	Parent=Os09t0361366-00
Chr09	irgsp1_rep	five_prime_UTR	11807552	11807757	.	-	.	Parent=Os09t0361366-00
Chr09	irgsp1_rep	five_prime_UTR	11807427	11807464	.	-	.	Parent=Os09t0361366-00
Chr09	irgsp1_rep	CDS	11807385	11807426	.	-	0	Parent=Os09t0361366-00
Chr09	irgsp1_rep	CDS	11806907	11807011	.	-	0	Parent=Os09t0361366-00
Chr09	irgsp1_rep	CDS	11805888	11805965	.	-	0	Parent=Os09t0361366-00
Chr09	irgsp1_rep	CDS	11805638	11805760	.	-	0	Parent=Os09t0361366-00
Chr09	irgsp1_rep	mRNA	11805613	11809021	.	+	.	ID=Os09t0361400-01;Name=Os09t0361400-01;Locus_id=Os09g0361400;Oryzabase Gene Symbol Synonym(s)=OSVDAC1%2C osvdac1%2C OsVDAC1%2C VDAC1;Oryzabase Gene Name Synonym(s)=voltage-dependent anion channel 1%2C voltage-dependent anion-selective channel 1;Note=Outer mitochondrial membrane protein porin (Voltage-dependent anion- selective channel protein) (VDAC).;Transcript_evidence=AK060652 (DDBJ%2C Best hit),AK061261 (DDBJ%2C Best hit);ORF_evidence=Q6K548 (UniProt);GO=Biological Process: anion transport (GO:0006820),Biological Process: regulation of anion transport (GO:0044070),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial outer membrane (GO:0005741),Molecular Function: voltage-gated anion channel activity (GO:0008308);InterPro=Porin%2C eukaryotic type (IPR001925);NIAS_FLcDNA=001-027-H05,006-212-C01;Oryzabase=14493;TENOR=Os09t0361400-01
Chr09	irgsp1_rep	five_prime_UTR	11805613	11805715	.	+	.	Parent=Os09t0361400-01
Chr09	irgsp1_rep	CDS	11805716	11805761	.	+	0	Parent=Os09t0361400-01
Chr09	irgsp1_rep	CDS	11805889	11805956	.	+	2	Parent=Os09t0361400-01
Chr09	irgsp1_rep	CDS	11806893	11807003	.	+	0	Parent=Os09t0361400-01
Chr09	irgsp1_rep	CDS	11807377	11807463	.	+	0	Parent=Os09t0361400-01
Chr09	irgsp1_rep	CDS	11807551	11807759	.	+	0	Parent=Os09t0361400-01
Chr09	irgsp1_rep	CDS	11808404	11808707	.	+	1	Parent=Os09t0361400-01
Chr09	irgsp1_rep	three_prime_UTR	11808708	11809021	.	+	.	Parent=Os09t0361400-01
Chr09	irgsp1_rep	mRNA	11805634	11808917	.	+	.	ID=Os09t0361400-02;Name=Os09t0361400-02;Locus_id=Os09g0361400;Oryzabase Gene Symbol Synonym(s)=OSVDAC1%2C osvdac1%2C OsVDAC1%2C VDAC1;Oryzabase Gene Name Synonym(s)=voltage-dependent anion channel 1%2C voltage-dependent anion-selective channel 1;Note=Similar to Mitochondrial outer membrane protein porin.;Transcript_evidence=AK072129 (DDBJ%2C Best hit);ORF_evidence=Q6K548 (UniProt);GO=Biological Process: anion transport (GO:0006820),Biological Process: regulation of anion transport (GO:0044070),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial outer membrane (GO:0005741),Molecular Function: voltage-gated anion channel activity (GO:0008308);InterPro=Porin%2C eukaryotic type (IPR001925);NIAS_FLcDNA=J013126C04;Oryzabase=14493;TENOR=Os09t0361400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	11805634	11805761	.	+	.	Parent=Os09t0361400-02
Chr09	irgsp1_rep	five_prime_UTR	11805889	11807328	.	+	.	Parent=Os09t0361400-02
Chr09	irgsp1_rep	CDS	11807329	11807463	.	+	0	Parent=Os09t0361400-02
Chr09	irgsp1_rep	CDS	11807551	11807763	.	+	0	Parent=Os09t0361400-02
Chr09	irgsp1_rep	three_prime_UTR	11807764	11808917	.	+	.	Parent=Os09t0361400-02
Chr09	irgsp1_rep	mRNA	11810070	11815321	.	+	.	ID=Os09t0361500-01;Name=Os09t0361500-01;Locus_id=Os09g0361500;Oryzabase Gene Symbol Synonym(s)=ICS1%2C OsICS1%2C OsICS%2C ICS;Oryzabase Gene Name Synonym(s)=isochorismate synthase 1%2C ISOCHORISMATE SYNTHASE1;Note=Isochorismate synthase domain containing protein.;Transcript_evidence=AK120689 (DDBJ%2C Best hit);ORF_evidence=B8BET1 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: isochorismate synthase activity (GO:0008909);InterPro=Isochorismate synthase (IPR004561),ADC synthase (IPR005801);NIAS_FLcDNA=J013169E21;Oryzabase=10462;TENOR=Os09t0361500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	11810070	11810153	.	+	.	Parent=Os09t0361500-01
Chr09	irgsp1_rep	CDS	11810154	11810249	.	+	0	Parent=Os09t0361500-01
Chr09	irgsp1_rep	CDS	11810346	11810830	.	+	0	Parent=Os09t0361500-01
Chr09	irgsp1_rep	CDS	11812118	11812235	.	+	1	Parent=Os09t0361500-01
Chr09	irgsp1_rep	CDS	11812335	11812451	.	+	0	Parent=Os09t0361500-01
Chr09	irgsp1_rep	CDS	11812530	11812676	.	+	0	Parent=Os09t0361500-01
Chr09	irgsp1_rep	CDS	11812812	11812886	.	+	0	Parent=Os09t0361500-01
Chr09	irgsp1_rep	CDS	11812949	11813017	.	+	0	Parent=Os09t0361500-01
Chr09	irgsp1_rep	CDS	11813230	11813256	.	+	0	Parent=Os09t0361500-01
Chr09	irgsp1_rep	three_prime_UTR	11813257	11813344	.	+	.	Parent=Os09t0361500-01
Chr09	irgsp1_rep	three_prime_UTR	11813466	11813521	.	+	.	Parent=Os09t0361500-01
Chr09	irgsp1_rep	three_prime_UTR	11813663	11813775	.	+	.	Parent=Os09t0361500-01
Chr09	irgsp1_rep	three_prime_UTR	11813934	11814018	.	+	.	Parent=Os09t0361500-01
Chr09	irgsp1_rep	three_prime_UTR	11814155	11814252	.	+	.	Parent=Os09t0361500-01
Chr09	irgsp1_rep	three_prime_UTR	11814379	11814471	.	+	.	Parent=Os09t0361500-01
Chr09	irgsp1_rep	three_prime_UTR	11814557	11814641	.	+	.	Parent=Os09t0361500-01
Chr09	irgsp1_rep	three_prime_UTR	11814987	11815321	.	+	.	Parent=Os09t0361500-01
Chr09	irgsp1_rep	mRNA	11810154	11814631	.	+	.	ID=Os09t0361500-02;Name=Os09t0361500-02;Locus_id=Os09g0361500;RAP-DB Gene Symbol Synonym(s)=OsICS;RAP-DB Gene Name Synonym(s)=Isochorismate synthase;Oryzabase Gene Symbol Synonym(s)=ICS1%2C OsICS1%2C OsICS%2C ICS;Oryzabase Gene Name Synonym(s)=isochorismate synthase 1%2C ISOCHORISMATE SYNTHASE1;Note=Isochorismate synthase;Transcript_evidence=LC222289;ORF_evidence=A0A286T796;GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: isochorismate synthase activity (GO:0008909);InterPro=ADC synthase (IPR005801),Isochorismate synthase (IPR004561),Chorismate-utilising enzyme%2C C-terminal (IPR015890);Manual Curation=October 12%2C 2020;Literature_PMID=29436485;Oryzabase=10462
Chr09	irgsp1_rep	CDS	11810154	11810249	.	+	0	Parent=Os09t0361500-02
Chr09	irgsp1_rep	CDS	11810346	11810830	.	+	0	Parent=Os09t0361500-02
Chr09	irgsp1_rep	CDS	11812118	11812235	.	+	1	Parent=Os09t0361500-02
Chr09	irgsp1_rep	CDS	11812335	11812451	.	+	0	Parent=Os09t0361500-02
Chr09	irgsp1_rep	CDS	11812530	11812676	.	+	0	Parent=Os09t0361500-02
Chr09	irgsp1_rep	CDS	11812812	11812886	.	+	0	Parent=Os09t0361500-02
Chr09	irgsp1_rep	CDS	11812949	11813017	.	+	0	Parent=Os09t0361500-02
Chr09	irgsp1_rep	CDS	11813226	11813344	.	+	0	Parent=Os09t0361500-02
Chr09	irgsp1_rep	CDS	11813466	11813523	.	+	1	Parent=Os09t0361500-02
Chr09	irgsp1_rep	CDS	11813665	11813775	.	+	0	Parent=Os09t0361500-02
Chr09	irgsp1_rep	CDS	11813934	11814018	.	+	0	Parent=Os09t0361500-02
Chr09	irgsp1_rep	CDS	11814155	11814252	.	+	2	Parent=Os09t0361500-02
Chr09	irgsp1_rep	CDS	11814379	11814471	.	+	0	Parent=Os09t0361500-02
Chr09	irgsp1_rep	CDS	11814557	11814631	.	+	0	Parent=Os09t0361500-02
Chr09	irgsp1_rep	mRNA	11819358	11821425	.	-	.	ID=Os09t0361700-01;Name=Os09t0361700-01;Locus_id=Os09g0361700;Note=Mitochondrial distribution and morphology family 35/apoptosis domain containing protein.;Transcript_evidence=AK063109 (DDBJ%2C Best hit);ORF_evidence=B7F1Z9 (UniProt);InterPro=Mitochondrial distribution/morphology family 35/apoptosis (IPR007918),Ubiquinol-cytoChrome C reductase hinge domain (IPR023184);NIAS_FLcDNA=001-111-D05;Expression=AK063109;TENOR=Os09t0361700-01;KEGG=Os09t0361700-01
Chr09	irgsp1_rep	five_prime_UTR	11821328	11821425	.	-	.	Parent=Os09t0361700-01
Chr09	irgsp1_rep	CDS	11821118	11821327	.	-	0	Parent=Os09t0361700-01
Chr09	irgsp1_rep	CDS	11819640	11819756	.	-	0	Parent=Os09t0361700-01
Chr09	irgsp1_rep	three_prime_UTR	11819358	11819639	.	-	.	Parent=Os09t0361700-01
Chr09	irgsp1_rep	mRNA	11820754	11821425	.	-	.	ID=Os09t0361700-02;Name=Os09t0361700-02;Locus_id=Os09g0361700;Note=Similar to predicted protein.;Transcript_evidence=AK109244 (DDBJ%2C Best hit);ORF_evidence=B8BET3 (UniProt);InterPro=Mitochondrial distribution/morphology family 35/apoptosis (IPR007918);NIAS_FLcDNA=002-156-G05;Expression=AK109244;TENOR=Os09t0361700-02;KEGG=Os09t0361700-02
Chr09	irgsp1_rep	five_prime_UTR	11821328	11821425	.	-	.	Parent=Os09t0361700-02
Chr09	irgsp1_rep	CDS	11820938	11821327	.	-	0	Parent=Os09t0361700-02
Chr09	irgsp1_rep	three_prime_UTR	11820754	11820937	.	-	.	Parent=Os09t0361700-02
Chr09	irgsp1_rep	mRNA	11818553	11819756	.	-	.	ID=Os09t0361700-03;Name=Os09t0361700-03;Locus_id=Os09g0361700;Note=Hypothetical conserved gene.;Transcript_evidence=AK073702 (DDBJ%2C Best hit);ORF_evidence=B8BET2 (UniProt);NIAS_FLcDNA=J033055D08;Expression=AK073702;TENOR=Os09t0361700-03;KEGG=Os09t0361700-03
Chr09	irgsp1_rep	five_prime_UTR	11819014	11819756	.	-	.	Parent=Os09t0361700-03
Chr09	irgsp1_rep	CDS	11818756	11819013	.	-	0	Parent=Os09t0361700-03
Chr09	irgsp1_rep	three_prime_UTR	11818553	11818755	.	-	.	Parent=Os09t0361700-03
Chr09	irgsp1_rep	mRNA	11843850	11851259	.	+	.	ID=Os09t0362500-01;Name=Os09t0362500-01;Locus_id=Os09g0362500;Note=Peptidase M1%2C membrane alanine aminopeptidase family protein.;Transcript_evidence=AK068165 (DDBJ%2C Best hit);ORF_evidence=NP_195035.2 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: metallopeptidase activity (GO:0008237),Molecular Function: zinc ion binding (GO:0008270);InterPro=Peptidase M1%2C alanine aminopeptidase/leukotriene A4 hydrolase (IPR001930),Peptidase M1%2C membrane alanine aminopeptidase%2C N-terminal (IPR014782);NIAS_FLcDNA=J013134N07;Expression=AK068165;TENOR=Os09t0362500-01;KEGG=Os09t0362500-01
Chr09	irgsp1_rep	CDS	11843850	11844053	.	+	0	Parent=Os09t0362500-01
Chr09	irgsp1_rep	CDS	11844148	11844293	.	+	0	Parent=Os09t0362500-01
Chr09	irgsp1_rep	CDS	11844666	11844768	.	+	1	Parent=Os09t0362500-01
Chr09	irgsp1_rep	CDS	11844899	11845085	.	+	0	Parent=Os09t0362500-01
Chr09	irgsp1_rep	CDS	11845217	11845310	.	+	2	Parent=Os09t0362500-01
Chr09	irgsp1_rep	CDS	11845453	11845606	.	+	1	Parent=Os09t0362500-01
Chr09	irgsp1_rep	CDS	11845749	11845853	.	+	0	Parent=Os09t0362500-01
Chr09	irgsp1_rep	CDS	11845940	11846056	.	+	0	Parent=Os09t0362500-01
Chr09	irgsp1_rep	CDS	11846446	11846559	.	+	0	Parent=Os09t0362500-01
Chr09	irgsp1_rep	CDS	11847380	11847562	.	+	0	Parent=Os09t0362500-01
Chr09	irgsp1_rep	CDS	11847960	11848245	.	+	0	Parent=Os09t0362500-01
Chr09	irgsp1_rep	CDS	11848343	11848464	.	+	2	Parent=Os09t0362500-01
Chr09	irgsp1_rep	CDS	11848554	11848651	.	+	0	Parent=Os09t0362500-01
Chr09	irgsp1_rep	CDS	11848787	11848964	.	+	1	Parent=Os09t0362500-01
Chr09	irgsp1_rep	CDS	11849106	11849220	.	+	0	Parent=Os09t0362500-01
Chr09	irgsp1_rep	CDS	11849313	11849380	.	+	2	Parent=Os09t0362500-01
Chr09	irgsp1_rep	CDS	11849502	11849579	.	+	0	Parent=Os09t0362500-01
Chr09	irgsp1_rep	CDS	11850536	11850613	.	+	0	Parent=Os09t0362500-01
Chr09	irgsp1_rep	CDS	11850707	11850889	.	+	0	Parent=Os09t0362500-01
Chr09	irgsp1_rep	three_prime_UTR	11850890	11851259	.	+	.	Parent=Os09t0362500-01
Chr09	irgsp1_rep	mRNA	11862271	11866452	.	+	.	ID=Os09t0362800-01;Name=Os09t0362800-01;Locus_id=Os09g0362800;Note=Hypothetical conserved gene.;Transcript_evidence=AK287918 (DDBJ%2C Best hit);ORF_evidence=NP_001062988.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508);InterPro=Peptidase M1%2C alanine aminopeptidase/leukotriene A4 hydrolase (IPR001930);NIAS_FLcDNA=J065214O12;TENOR=Os09t0362800-01;KEGG=Os09t0362800-01
Chr09	irgsp1_rep	five_prime_UTR	11862271	11862859	.	+	.	Parent=Os09t0362800-01
Chr09	irgsp1_rep	CDS	11862860	11863238	.	+	0	Parent=Os09t0362800-01
Chr09	irgsp1_rep	CDS	11863325	11863446	.	+	2	Parent=Os09t0362800-01
Chr09	irgsp1_rep	CDS	11863538	11863654	.	+	0	Parent=Os09t0362800-01
Chr09	irgsp1_rep	three_prime_UTR	11863655	11863918	.	+	.	Parent=Os09t0362800-01
Chr09	irgsp1_rep	three_prime_UTR	11864002	11864116	.	+	.	Parent=Os09t0362800-01
Chr09	irgsp1_rep	three_prime_UTR	11864200	11864267	.	+	.	Parent=Os09t0362800-01
Chr09	irgsp1_rep	three_prime_UTR	11864390	11864467	.	+	.	Parent=Os09t0362800-01
Chr09	irgsp1_rep	three_prime_UTR	11865677	11865754	.	+	.	Parent=Os09t0362800-01
Chr09	irgsp1_rep	three_prime_UTR	11865839	11866452	.	+	.	Parent=Os09t0362800-01
Chr09	irgsp1_rep	mRNA	11862274	11866371	.	+	.	ID=Os09t0362800-02;Name=Os09t0362800-02;Locus_id=Os09g0362800;Note=Peptidase M1%2C alanine aminopeptidase/leukotriene A4 hydrolase domain containing protein.;Transcript_evidence=AK068512 (DDBJ%2C Best hit);ORF_evidence=Q6K4E7 (UniProt);GO=Biological Process: proteolysis (GO:0006508);InterPro=Peptidase M1%2C alanine aminopeptidase/leukotriene A4 hydrolase (IPR001930);NIAS_FLcDNA=J013152F03;TENOR=Os09t0362800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	11862274	11862982	.	+	.	Parent=Os09t0362800-02
Chr09	irgsp1_rep	CDS	11862983	11863238	.	+	0	Parent=Os09t0362800-02
Chr09	irgsp1_rep	CDS	11863325	11863446	.	+	2	Parent=Os09t0362800-02
Chr09	irgsp1_rep	CDS	11863538	11863635	.	+	0	Parent=Os09t0362800-02
Chr09	irgsp1_rep	CDS	11863744	11863918	.	+	1	Parent=Os09t0362800-02
Chr09	irgsp1_rep	CDS	11864002	11864116	.	+	0	Parent=Os09t0362800-02
Chr09	irgsp1_rep	CDS	11864200	11864267	.	+	2	Parent=Os09t0362800-02
Chr09	irgsp1_rep	CDS	11864390	11864467	.	+	0	Parent=Os09t0362800-02
Chr09	irgsp1_rep	CDS	11865677	11865754	.	+	0	Parent=Os09t0362800-02
Chr09	irgsp1_rep	CDS	11865839	11866021	.	+	0	Parent=Os09t0362800-02
Chr09	irgsp1_rep	three_prime_UTR	11866022	11866371	.	+	.	Parent=Os09t0362800-02
Chr09	irgsp1_rep	mRNA	11870519	11874251	.	+	.	ID=Os09t0362900-01;Name=Os09t0362900-01;Locus_id=Os09g0362900;Oryzabase Gene Symbol Synonym(s)=OsSET35%2C SDG727%2C OsSUVH6;Oryzabase Gene Name Synonym(s)=SET protein 35%2C SUVH Histone Methyltransferase 6;Note=SET domain containing protein.;Transcript_evidence=AK067187 (DDBJ%2C Best hit);ORF_evidence=B8BET7 (UniProt);GO=Biological Process: histone lysine methylation (GO:0034968),Cellular Component: nucleus (GO:0005634),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: histone-lysine N-methyltransferase activity (GO:0018024),Molecular Function: histone binding (GO:0042393);InterPro=SET domain (IPR001214),SRA-YDG (IPR003105),Post-SET domain (IPR003616),Pre-SET domain (IPR007728);NIAS_FLcDNA=J013096C06;Oryzabase=13398;Expression=AK067187;TENOR=Os09t0362900-01;KEGG=Os09t0362900-01
Chr09	irgsp1_rep	five_prime_UTR	11870519	11870646	.	+	.	Parent=Os09t0362900-01
Chr09	irgsp1_rep	CDS	11870647	11872820	.	+	0	Parent=Os09t0362900-01
Chr09	irgsp1_rep	CDS	11873588	11874179	.	+	1	Parent=Os09t0362900-01
Chr09	irgsp1_rep	three_prime_UTR	11874180	11874251	.	+	.	Parent=Os09t0362900-01
Chr09	irgsp1_rep	mRNA	11880481	11884012	.	-	.	ID=Os09t0363000-00;Name=Os09t0363000-00;Locus_id=Os09g0363000;Note=Hypothetical protein.;Transcript_evidence=tplb0045k10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0363000-00
Chr09	irgsp1_rep	five_prime_UTR	11883725	11884012	.	-	.	Parent=Os09t0363000-00
Chr09	irgsp1_rep	five_prime_UTR	11883482	11883636	.	-	.	Parent=Os09t0363000-00
Chr09	irgsp1_rep	five_prime_UTR	11882976	11883333	.	-	.	Parent=Os09t0363000-00
Chr09	irgsp1_rep	five_prime_UTR	11882434	11882547	.	-	.	Parent=Os09t0363000-00
Chr09	irgsp1_rep	five_prime_UTR	11881860	11882327	.	-	.	Parent=Os09t0363000-00
Chr09	irgsp1_rep	five_prime_UTR	11881742	11881763	.	-	.	Parent=Os09t0363000-00
Chr09	irgsp1_rep	CDS	11881453	11881741	.	-	0	Parent=Os09t0363000-00
Chr09	irgsp1_rep	CDS	11880481	11880925	.	-	2	Parent=Os09t0363000-00
Chr09	irgsp1_rep	mRNA	11880515	11885069	.	+	.	ID=Os09t0363100-01;Name=Os09t0363100-01;Locus_id=Os09g0363100;RAP-DB Gene Symbol Synonym(s)=AL2;RAP-DB Gene Name Synonym(s)=Albino Leaf 2;Note=Chloroplast group IIA intron splicing factor CRS1%2C Splicing of chloroplast group I and II introns%2C Chloroplast development;Transcript_evidence=AK065958,XM_015757149;ORF_evidence=Q6K4E4;GO=Molecular Function: RNA binding (GO:0003723);InterPro=RNA-binding%2C CRM domain (IPR001890);NIAS_FLcDNA=J013045D17;Manual Curation=August 24%2C 2016;Literature_PMID=27543605;Oryzabase=23501;Expression=AK065958;TENOR=Os09t0363100-01;KEGG=Os09t0363100-01
Chr09	irgsp1_rep	five_prime_UTR	11880515	11880538	.	+	.	Parent=Os09t0363100-01
Chr09	irgsp1_rep	CDS	11880539	11881753	.	+	0	Parent=Os09t0363100-01
Chr09	irgsp1_rep	CDS	11881852	11882314	.	+	0	Parent=Os09t0363100-01
Chr09	irgsp1_rep	CDS	11882419	11882549	.	+	2	Parent=Os09t0363100-01
Chr09	irgsp1_rep	CDS	11882978	11883328	.	+	0	Parent=Os09t0363100-01
Chr09	irgsp1_rep	CDS	11883474	11883630	.	+	0	Parent=Os09t0363100-01
Chr09	irgsp1_rep	CDS	11883719	11884011	.	+	2	Parent=Os09t0363100-01
Chr09	irgsp1_rep	CDS	11884118	11884177	.	+	0	Parent=Os09t0363100-01
Chr09	irgsp1_rep	CDS	11884281	11884370	.	+	0	Parent=Os09t0363100-01
Chr09	irgsp1_rep	CDS	11884525	11884608	.	+	0	Parent=Os09t0363100-01
Chr09	irgsp1_rep	three_prime_UTR	11884609	11885069	.	+	.	Parent=Os09t0363100-01
Chr09	irgsp1_rep	mRNA	11885812	11893985	.	+	.	ID=Os09t0363200-01;Name=Os09t0363200-01;Locus_id=Os09g0363200;Note=Similar to mutator-like transposase [Oryza sativa (japonica cultivar-group)].;Transcript_evidence=AK109626 (DDBJ%2C Best hit);ORF_evidence=Q2QQ80 (UniProt);NIAS_FLcDNA=002-138-B11;Expression=AK109626;TENOR=Os09t0363200-01;KEGG=Os09t0363200-01
Chr09	irgsp1_rep	five_prime_UTR	11885812	11886399	.	+	.	Parent=Os09t0363200-01
Chr09	irgsp1_rep	five_prime_UTR	11891089	11891160	.	+	.	Parent=Os09t0363200-01
Chr09	irgsp1_rep	five_prime_UTR	11893235	11893281	.	+	.	Parent=Os09t0363200-01
Chr09	irgsp1_rep	CDS	11893282	11893368	.	+	0	Parent=Os09t0363200-01
Chr09	irgsp1_rep	CDS	11893461	11893889	.	+	0	Parent=Os09t0363200-01
Chr09	irgsp1_rep	three_prime_UTR	11893890	11893985	.	+	.	Parent=Os09t0363200-01
Chr09	irgsp1_rep	mRNA	11895843	11898477	.	+	.	ID=Os09t0363400-00;Name=Os09t0363400-00;Locus_id=Os09g0363400;Note=Domain of unknown function DUF2439 domain containing protein.;Transcript_evidence=tplb0045k09 (Wheat FLcDNA);ORF_evidence=B9G367 (UniProt);InterPro=Domain of unknown function DUF2439 (IPR018838);TENOR=Os09t0363400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	11895843	11896449	.	+	0	Parent=Os09t0363400-00
Chr09	irgsp1_rep	CDS	11896550	11896647	.	+	2	Parent=Os09t0363400-00
Chr09	irgsp1_rep	CDS	11896833	11896968	.	+	0	Parent=Os09t0363400-00
Chr09	irgsp1_rep	CDS	11897129	11897260	.	+	2	Parent=Os09t0363400-00
Chr09	irgsp1_rep	CDS	11897382	11897510	.	+	2	Parent=Os09t0363400-00
Chr09	irgsp1_rep	CDS	11897606	11897607	.	+	2	Parent=Os09t0363400-00
Chr09	irgsp1_rep	three_prime_UTR	11897608	11897703	.	+	.	Parent=Os09t0363400-00
Chr09	irgsp1_rep	three_prime_UTR	11897893	11898028	.	+	.	Parent=Os09t0363400-00
Chr09	irgsp1_rep	three_prime_UTR	11898155	11898283	.	+	.	Parent=Os09t0363400-00
Chr09	irgsp1_rep	three_prime_UTR	11898373	11898477	.	+	.	Parent=Os09t0363400-00
Chr09	irgsp1_rep	mRNA	11904784	11908107	.	+	.	ID=Os09t0363500-01;Name=Os09t0363500-01;Locus_id=Os09g0363500;Note=Conserved hypothetical protein.;Transcript_evidence=AK065312 (DDBJ%2C Best hit);ORF_evidence=A2Z0E0 (UniProt);NIAS_FLcDNA=J013002O19;Expression=AK065312;TENOR=Os09t0363500-01;KEGG=Os09t0363500-01
Chr09	irgsp1_rep	five_prime_UTR	11904784	11904987	.	+	.	Parent=Os09t0363500-01
Chr09	irgsp1_rep	five_prime_UTR	11905615	11905639	.	+	.	Parent=Os09t0363500-01
Chr09	irgsp1_rep	CDS	11905640	11906541	.	+	0	Parent=Os09t0363500-01
Chr09	irgsp1_rep	CDS	11907139	11907628	.	+	1	Parent=Os09t0363500-01
Chr09	irgsp1_rep	three_prime_UTR	11907629	11908107	.	+	.	Parent=Os09t0363500-01
Chr09	irgsp1_rep	mRNA	11909067	11912702	.	-	.	ID=Os09t0363600-01;Name=Os09t0363600-01;Locus_id=Os09g0363600;Oryzabase Gene Symbol Synonym(s)=OsWD40-171;Note=WD40/YVTN repeat-like domain containing protein.;Transcript_evidence=AK111628 (DDBJ%2C Best hit);ORF_evidence=NP_849989.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J013119F12;Oryzabase=10852;Expression=AK111628;TENOR=Os09t0363600-01;KEGG=Os09t0363600-01
Chr09	irgsp1_rep	five_prime_UTR	11912642	11912702	.	-	.	Parent=Os09t0363600-01
Chr09	irgsp1_rep	CDS	11912405	11912641	.	-	0	Parent=Os09t0363600-01
Chr09	irgsp1_rep	CDS	11912199	11912314	.	-	0	Parent=Os09t0363600-01
Chr09	irgsp1_rep	CDS	11912027	11912103	.	-	1	Parent=Os09t0363600-01
Chr09	irgsp1_rep	CDS	11911735	11911780	.	-	2	Parent=Os09t0363600-01
Chr09	irgsp1_rep	CDS	11911551	11911611	.	-	1	Parent=Os09t0363600-01
Chr09	irgsp1_rep	CDS	11911329	11911382	.	-	0	Parent=Os09t0363600-01
Chr09	irgsp1_rep	CDS	11911079	11911159	.	-	0	Parent=Os09t0363600-01
Chr09	irgsp1_rep	CDS	11910933	11910972	.	-	0	Parent=Os09t0363600-01
Chr09	irgsp1_rep	CDS	11910498	11910625	.	-	2	Parent=Os09t0363600-01
Chr09	irgsp1_rep	three_prime_UTR	11910323	11910497	.	-	.	Parent=Os09t0363600-01
Chr09	irgsp1_rep	three_prime_UTR	11909526	11909642	.	-	.	Parent=Os09t0363600-01
Chr09	irgsp1_rep	three_prime_UTR	11909067	11909415	.	-	.	Parent=Os09t0363600-01
Chr09	irgsp1_rep	mRNA	11909121	11909642	.	-	.	ID=Os09t0363600-02;Name=Os09t0363600-02;Locus_id=Os09g0363600;Oryzabase Gene Symbol Synonym(s)=OsWD40-171;Note=Similar to transducin family protein / WD-40 repeat family protein.;Transcript_evidence=AK111952 (DDBJ%2C Best hit);ORF_evidence=NP_849989.1 (RefSeq);NIAS_FLcDNA=001-027-F12;Oryzabase=10852;Expression=AK111952;TENOR=Os09t0363600-02;KEGG=Os09t0363600-02
Chr09	irgsp1_rep	CDS	11909526	11909642	.	-	0	Parent=Os09t0363600-02
Chr09	irgsp1_rep	CDS	11909320	11909415	.	-	0	Parent=Os09t0363600-02
Chr09	irgsp1_rep	three_prime_UTR	11909121	11909319	.	-	.	Parent=Os09t0363600-02
Chr09	irgsp1_rep	mRNA	11913658	11916264	.	-	.	ID=Os09t0363700-01;Name=Os09t0363700-01;Locus_id=Os09g0363700;Note=Conserved hypothetical protein.;Transcript_evidence=AK103667 (DDBJ%2C Best hit);ORF_evidence=F2DYB6 (UniProt);NIAS_FLcDNA=J033135K13;Expression=AK103667;TENOR=Os09t0363700-01;KEGG=Os09t0363700-01
Chr09	irgsp1_rep	five_prime_UTR	11916176	11916264	.	-	.	Parent=Os09t0363700-01
Chr09	irgsp1_rep	five_prime_UTR	11915477	11915522	.	-	.	Parent=Os09t0363700-01
Chr09	irgsp1_rep	CDS	11915290	11915476	.	-	0	Parent=Os09t0363700-01
Chr09	irgsp1_rep	CDS	11913996	11914201	.	-	2	Parent=Os09t0363700-01
Chr09	irgsp1_rep	three_prime_UTR	11913658	11913995	.	-	.	Parent=Os09t0363700-01
Chr09	irgsp1_rep	mRNA	11916443	11920244	.	+	.	ID=Os09t0363800-00;Name=Os09t0363800-00;Locus_id=Os09g0363800;Note=Similar to metallo-beta-lactamase family protein.;Transcript_evidence=EU963403 (DDBJ);ORF_evidence=NP_187996.2 (RefSeq);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Beta-lactamase-like (IPR001279);TENOR=Os09t0363800-00;KEGG=Os09t0363800-00
Chr09	irgsp1_rep	CDS	11916443	11916867	.	+	0	Parent=Os09t0363800-00
Chr09	irgsp1_rep	CDS	11917007	11917157	.	+	1	Parent=Os09t0363800-00
Chr09	irgsp1_rep	CDS	11917273	11917385	.	+	0	Parent=Os09t0363800-00
Chr09	irgsp1_rep	CDS	11917527	11917568	.	+	1	Parent=Os09t0363800-00
Chr09	irgsp1_rep	CDS	11917645	11917700	.	+	1	Parent=Os09t0363800-00
Chr09	irgsp1_rep	CDS	11917815	11917891	.	+	2	Parent=Os09t0363800-00
Chr09	irgsp1_rep	CDS	11918084	11918203	.	+	0	Parent=Os09t0363800-00
Chr09	irgsp1_rep	CDS	11918743	11918819	.	+	0	Parent=Os09t0363800-00
Chr09	irgsp1_rep	CDS	11918909	11918972	.	+	1	Parent=Os09t0363800-00
Chr09	irgsp1_rep	CDS	11919132	11919182	.	+	0	Parent=Os09t0363800-00
Chr09	irgsp1_rep	CDS	11919270	11919318	.	+	0	Parent=Os09t0363800-00
Chr09	irgsp1_rep	CDS	11919977	11920095	.	+	2	Parent=Os09t0363800-00
Chr09	irgsp1_rep	three_prime_UTR	11920096	11920244	.	+	.	Parent=Os09t0363800-00
Chr09	irgsp1_rep	mRNA	11920888	11925930	.	-	.	ID=Os09t0363900-01;Name=Os09t0363900-01;Locus_id=Os09g0363900;RAP-DB Gene Symbol Synonym(s)=ONI3;RAP-DB Gene Name Synonym(s)=ONION3;Oryzabase Gene Symbol Synonym(s)=ONI3;Oryzabase Gene Name Synonym(s)=ONION3%2C ONION 3;Note=Putative omega-alcohol dehydrogenase%2C Biosynthesis of long-chain fatty acids%2C Organ separation%2C Shoot development;Transcript_evidence=AK072899;ORF_evidence=Q6K4D7;GO=Biological Process: alcohol metabolic process (GO:0006066),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: choline dehydrogenase activity (GO:0008812),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Glucose-methanol-choline oxidoreductase (IPR012132),Glucose-methanol-choline oxidoreductase%2C N-terminal (IPR000172),Glucose-methanol-choline oxidoreductase%2C C-terminal (IPR007867);NIAS_FLcDNA=J023148B06;Manual Curation=November 21%2C 2014;Literature_PMID=24192297;Oryzabase=13070;Expression=AK072899;TENOR=Os09t0363900-01;KEGG=Os09t0363900-01
Chr09	irgsp1_rep	five_prime_UTR	11925828	11925930	.	-	.	Parent=Os09t0363900-01
Chr09	irgsp1_rep	CDS	11925755	11925827	.	-	0	Parent=Os09t0363900-01
Chr09	irgsp1_rep	CDS	11924779	11925133	.	-	2	Parent=Os09t0363900-01
Chr09	irgsp1_rep	CDS	11922769	11923082	.	-	1	Parent=Os09t0363900-01
Chr09	irgsp1_rep	CDS	11922236	11922624	.	-	2	Parent=Os09t0363900-01
Chr09	irgsp1_rep	CDS	11921212	11921783	.	-	0	Parent=Os09t0363900-01
Chr09	irgsp1_rep	CDS	11921053	11921107	.	-	1	Parent=Os09t0363900-01
Chr09	irgsp1_rep	three_prime_UTR	11920888	11921052	.	-	.	Parent=Os09t0363900-01
Chr09	irgsp1_rep	mRNA	11934475	11935062	.	-	.	ID=Os09t0363950-00;Name=Os09t0363950-00;Locus_id=Os09g0363950;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G369 (UniProt);TENOR=Os09t0363950-00
Chr09	irgsp1_rep	CDS	11934475	11935062	.	-	0	Parent=Os09t0363950-00
Chr09	irgsp1_rep	mRNA	11934577	11940113	.	+	.	ID=Os09t0364000-01;Name=Os09t0364000-01;Locus_id=Os09g0364000;CGSNL Gene Symbol=C3H59;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 59;Oryzabase Gene Symbol Synonym(s)=OsC3H59;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 59;Note=Histidine triad motif domain containing protein.;Transcript_evidence=AK111875 (DDBJ%2C Best hit);ORF_evidence=NP_974945.2 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: catalytic activity (GO:0003824),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571),Cwf19-like protein%2C C-terminal domain-2 (IPR006767),Cwf19-like%2C C-terminal domain-1 (IPR006768),Histidine triad-like motif (IPR011146),Histidine triad motif (IPR011151);NIAS_FLcDNA=J033043A02;Oryzabase=8625;Expression=AK111875;TENOR=Os09t0364000-01;KEGG=Os09t0364000-01
Chr09	irgsp1_rep	five_prime_UTR	11934577	11934598	.	+	.	Parent=Os09t0364000-01
Chr09	irgsp1_rep	CDS	11934599	11934703	.	+	0	Parent=Os09t0364000-01
Chr09	irgsp1_rep	CDS	11934781	11935063	.	+	0	Parent=Os09t0364000-01
Chr09	irgsp1_rep	CDS	11935332	11935453	.	+	2	Parent=Os09t0364000-01
Chr09	irgsp1_rep	CDS	11935582	11935703	.	+	0	Parent=Os09t0364000-01
Chr09	irgsp1_rep	CDS	11936404	11936521	.	+	1	Parent=Os09t0364000-01
Chr09	irgsp1_rep	CDS	11937749	11938167	.	+	0	Parent=Os09t0364000-01
Chr09	irgsp1_rep	CDS	11938449	11938749	.	+	1	Parent=Os09t0364000-01
Chr09	irgsp1_rep	CDS	11938887	11938983	.	+	0	Parent=Os09t0364000-01
Chr09	irgsp1_rep	CDS	11939470	11939615	.	+	2	Parent=Os09t0364000-01
Chr09	irgsp1_rep	CDS	11939726	11939854	.	+	0	Parent=Os09t0364000-01
Chr09	irgsp1_rep	three_prime_UTR	11939855	11940113	.	+	.	Parent=Os09t0364000-01
Chr09	irgsp1_rep	mRNA	11943224	11944253	.	+	.	ID=Os09t0364100-01;Name=Os09t0364100-01;Locus_id=Os09g0364100;Oryzabase Gene Symbol Synonym(s)=OsSTA224%2C STA224;Note=Lateral organ boundaries%2C LOB domain containing protein.;Transcript_evidence=AK071233 (DDBJ%2C Best hit);ORF_evidence=A2Z0E5 (UniProt);InterPro=Lateral organ boundaries%2C LOB (IPR004883);NIAS_FLcDNA=J023082A13;Oryzabase=19496;TENOR=Os09t0364100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	11943224	11943225	.	+	.	Parent=Os09t0364100-01
Chr09	irgsp1_rep	CDS	11943226	11944053	.	+	0	Parent=Os09t0364100-01
Chr09	irgsp1_rep	three_prime_UTR	11944054	11944253	.	+	.	Parent=Os09t0364100-01
Chr09	irgsp1_rep	mRNA	11956010	11956876	.	+	.	ID=Os09t0364400-00;Name=Os09t0364400-00;Locus_id=Os09g0364400;Oryzabase Gene Symbol Synonym(s)=AGP%2C OsAGP;Oryzabase Gene Name Synonym(s)=Arabinogalactan protein;Note=Conserved hypothetical protein.;Transcript_evidence=AK371492 (DDBJ);ORF_evidence=NP_001062999.1 (RefSeq);Oryzabase=23027;TENOR=Os09t0364400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	11956010	11956072	.	+	.	Parent=Os09t0364400-00
Chr09	irgsp1_rep	CDS	11956073	11956876	.	+	0	Parent=Os09t0364400-00
Chr09	irgsp1_rep	mRNA	11958028	11960980	.	+	.	ID=Os09t0364500-01;Name=Os09t0364500-01;Locus_id=Os09g0364500;Note=GTP-binding protein%2C HSR1-related domain containing protein.;Transcript_evidence=AK243137 (DDBJ%2C Best hit);ORF_evidence=Q9ZSB8 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=GTP-binding domain%2C HSR1-related (IPR002917);NIAS_FLcDNA=J100031B16;TENOR=Os09t0364500-01;KEGG=Os09t0364500-01
Chr09	irgsp1_rep	five_prime_UTR	11958028	11958110	.	+	.	Parent=Os09t0364500-01
Chr09	irgsp1_rep	CDS	11958111	11959367	.	+	0	Parent=Os09t0364500-01
Chr09	irgsp1_rep	CDS	11960075	11960242	.	+	0	Parent=Os09t0364500-01
Chr09	irgsp1_rep	CDS	11960339	11960728	.	+	0	Parent=Os09t0364500-01
Chr09	irgsp1_rep	three_prime_UTR	11960729	11960980	.	+	.	Parent=Os09t0364500-01
Chr09	irgsp1_rep	mRNA	11976318	11977778	.	+	.	ID=Os09t0364800-01;Name=Os09t0364800-01;Locus_id=Os09g0364800;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK068537 (DDBJ%2C Best hit);ORF_evidence=NP_001152036.1 (RefSeq);NIAS_FLcDNA=J013152L24;Expression=AK068537;TENOR=Os09t0364800-01;KEGG=Os09t0364800-01
Chr09	irgsp1_rep	five_prime_UTR	11976318	11976580	.	+	.	Parent=Os09t0364800-01
Chr09	irgsp1_rep	CDS	11976581	11976634	.	+	0	Parent=Os09t0364800-01
Chr09	irgsp1_rep	CDS	11977347	11977631	.	+	0	Parent=Os09t0364800-01
Chr09	irgsp1_rep	three_prime_UTR	11977632	11977778	.	+	.	Parent=Os09t0364800-01
Chr09	irgsp1_rep	mRNA	11985971	11989487	.	+	.	ID=Os09t0364900-01;Name=Os09t0364900-01;Locus_id=Os09g0364900;Note=Similar to SNF1-related kinase complex anchoring protein SIP1.;Transcript_evidence=AK120754 (DDBJ%2C Best hit);ORF_evidence=Q18PR7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=5-AMP-activated protein kinase%2C beta subunit%2C interaction domain (IPR006828);NIAS_FLcDNA=J023006L01;Expression=AK120754;TENOR=Os09t0364900-01;KEGG=Os09t0364900-01
Chr09	irgsp1_rep	five_prime_UTR	11985971	11986068	.	+	.	Parent=Os09t0364900-01
Chr09	irgsp1_rep	five_prime_UTR	11986535	11986612	.	+	.	Parent=Os09t0364900-01
Chr09	irgsp1_rep	five_prime_UTR	11988868	11988897	.	+	.	Parent=Os09t0364900-01
Chr09	irgsp1_rep	CDS	11988898	11988924	.	+	0	Parent=Os09t0364900-01
Chr09	irgsp1_rep	CDS	11989009	11989317	.	+	0	Parent=Os09t0364900-01
Chr09	irgsp1_rep	three_prime_UTR	11989318	11989487	.	+	.	Parent=Os09t0364900-01
Chr09	irgsp1_rep	mRNA	11986004	11989538	.	+	.	ID=Os09t0364900-02;Name=Os09t0364900-02;Locus_id=Os09g0364900;Note=Similar to SNF1-related kinase complex anchoring protein SIP1.;Transcript_evidence=AK072157 (DDBJ%2C Best hit);ORF_evidence=Q18PR7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=5-AMP-activated protein kinase%2C beta subunit%2C interaction domain (IPR006828);NIAS_FLcDNA=J013133A10;Expression=AK072157;TENOR=Os09t0364900-02;KEGG=Os09t0364900-02
Chr09	irgsp1_rep	five_prime_UTR	11986004	11986068	.	+	.	Parent=Os09t0364900-02
Chr09	irgsp1_rep	five_prime_UTR	11986535	11988897	.	+	.	Parent=Os09t0364900-02
Chr09	irgsp1_rep	CDS	11988898	11988924	.	+	0	Parent=Os09t0364900-02
Chr09	irgsp1_rep	CDS	11989009	11989317	.	+	0	Parent=Os09t0364900-02
Chr09	irgsp1_rep	three_prime_UTR	11989318	11989538	.	+	.	Parent=Os09t0364900-02
Chr09	irgsp1_rep	mRNA	11990015	11993428	.	-	.	ID=Os09t0365000-00;Name=Os09t0365000-00;Locus_id=Os09g0365000;Oryzabase Gene Symbol Synonym(s)=OsVQ34;Oryzabase Gene Name Synonym(s)=VQ motif-containing protein 34;Note=Disease resistance protein domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001175803.1 (RefSeq);GO=Biological Process: defense response (GO:0006952),Molecular Function: protein binding (GO:0005515),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),Leucine-rich repeat (IPR001611),NB-ARC (IPR002182),VQ (IPR008889);Oryzabase=13650;TENOR=Os09t0365000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	11992116	11993428	.	-	0	Parent=Os09t0365000-00
Chr09	irgsp1_rep	CDS	11990015	11991941	.	-	1	Parent=Os09t0365000-00
Chr09	irgsp1_rep	mRNA	11994040	11994786	.	-	.	ID=Os09t0365100-01;Name=Os09t0365100-01;Locus_id=Os09g0365100;Note=Hypothetical conserved gene.;Transcript_evidence=AK121161 (DDBJ%2C Best hit);ORF_evidence=Q5ZBQ8 (UniProt);NIAS_FLcDNA=J023080D13;Expression=AK121161;TENOR=Os09t0365100-01;KEGG=Os09t0365100-01
Chr09	irgsp1_rep	five_prime_UTR	11994485	11994786	.	-	.	Parent=Os09t0365100-01
Chr09	irgsp1_rep	CDS	11994284	11994484	.	-	0	Parent=Os09t0365100-01
Chr09	irgsp1_rep	three_prime_UTR	11994040	11994283	.	-	.	Parent=Os09t0365100-01
Chr09	irgsp1_rep	mRNA	11998384	12001136	.	+	.	ID=Os09t0365300-01;Name=Os09t0365300-01;Locus_id=Os09g0365300;Note=NB-ARC domain containing protein.;Transcript_evidence=AK063494 (DDBJ%2C Best hit),AK111465 (DDBJ%2C Best hit);ORF_evidence=A3BY34 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=001-116-D01,002-183-D05;TENOR=Os09t0365300-01
Chr09	irgsp1_rep	five_prime_UTR	11998384	11998441	.	+	.	Parent=Os09t0365300-01
Chr09	irgsp1_rep	five_prime_UTR	11998583	11998699	.	+	.	Parent=Os09t0365300-01
Chr09	irgsp1_rep	CDS	11998700	12000910	.	+	0	Parent=Os09t0365300-01
Chr09	irgsp1_rep	three_prime_UTR	12000911	12001136	.	+	.	Parent=Os09t0365300-01
Chr09	irgsp1_rep	mRNA	12005282	12006024	.	+	.	ID=Os09t0365450-00;Name=Os09t0365450-00;Locus_id=Os09g0365450;Note=Similar to DNA binding protein.;Transcript_evidence=AK367679 (DDBJ);ORF_evidence=NP_001146992.1 (RefSeq);TENOR=Os09t0365450-00
Chr09	irgsp1_rep	CDS	12005282	12005737	.	+	0	Parent=Os09t0365450-00
Chr09	irgsp1_rep	three_prime_UTR	12005738	12006024	.	+	.	Parent=Os09t0365450-00
Chr09	irgsp1_rep	mRNA	12030044	12035203	.	-	.	ID=Os09t0365900-01;Name=Os09t0365900-01;Locus_id=Os09g0365900;RAP-DB Gene Symbol Synonym(s)=OsORAP1%2C  OsAAO4;RAP-DB Gene Name Synonym(s)=OZONE-RESPONSIVE APOPLASTIC PROTEIN 1%2C ascorbate oxidase 4;CGSNL Gene Symbol=ORAP1;CGSNL Gene Name=OZONE-RESPONSIVE APOPLASTIC PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsORAP1%2C OzT9%2C AO%2C OsAAO4%2C AAO4;Oryzabase Gene Name Synonym(s)=OZONE-RESPONSIVE APOPLASTIC PROTEIN1%2C ASCORBATE OXIDASE%2C ascorbate oxidase 4;Note=Apoplastic protein%2C Ascorbate oxidase%2C Induction of cell death in ozone stress%2C Abiotic stress response;Transcript_evidence=AK243471;ORF_evidence=AKV89409;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: copper ion binding (GO:0005507),Molecular Function: oxidoreductase activity (GO:0016491),Cellular Component: extracellular region (GO:0005576);InterPro=L-ascorbate oxidase%2C plants (IPR017760),Cupredoxin (IPR008972),Multicopper oxidase%2C type 3 (IPR011707),Multicopper oxidase%2C type 1 (IPR001117),Multicopper oxidase%2C type 2 (IPR011706),Multicopper oxidase%2C copper-binding site (IPR002355);NIAS_FLcDNA=J100072D12;Manual Curation=November 30%2C 2017;Literature_PMID=28261251,26220952;Oryzabase=19929;TENOR=Os09t0365900-01;KEGG=Os09t0365900-01 (EC:1.10.3.3)
Chr09	irgsp1_rep	five_prime_UTR	12035062	12035203	.	-	.	Parent=Os09t0365900-01
Chr09	irgsp1_rep	CDS	12034291	12035061	.	-	0	Parent=Os09t0365900-01
Chr09	irgsp1_rep	CDS	12030280	12031242	.	-	0	Parent=Os09t0365900-01
Chr09	irgsp1_rep	three_prime_UTR	12030044	12030279	.	-	.	Parent=Os09t0365900-01
Chr09	irgsp1_rep	mRNA	12030285	12035067	.	+	.	ID=Os09t0366101-00;Name=Os09t0366101-00;Locus_id=Os09g0366101;Note=Hypothetical protein.;Transcript_evidence=tplb0051b23 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0366101-00
Chr09	irgsp1_rep	five_prime_UTR	12030285	12030285	.	+	.	Parent=Os09t0366101-00
Chr09	irgsp1_rep	CDS	12030286	12031254	.	+	0	Parent=Os09t0366101-00
Chr09	irgsp1_rep	three_prime_UTR	12031255	12031272	.	+	.	Parent=Os09t0366101-00
Chr09	irgsp1_rep	three_prime_UTR	12034243	12035067	.	+	.	Parent=Os09t0366101-00
Chr09	irgsp1_rep	mRNA	12067265	12068259	.	-	.	ID=Os09t0366500-01;Name=Os09t0366500-01;Locus_id=Os09g0366500;Note=Conserved hypothetical protein.;Transcript_evidence=AK101278 (DDBJ%2C Best hit);ORF_evidence=B9G377 (UniProt);NIAS_FLcDNA=J033033C06;Expression=AK101278;TENOR=Os09t0366500-01;KEGG=Os09t0366500-01
Chr09	irgsp1_rep	five_prime_UTR	12068250	12068259	.	-	.	Parent=Os09t0366500-01
Chr09	irgsp1_rep	CDS	12067578	12068249	.	-	0	Parent=Os09t0366500-01
Chr09	irgsp1_rep	three_prime_UTR	12067265	12067577	.	-	.	Parent=Os09t0366500-01
Chr09	irgsp1_rep	mRNA	12080465	12081854	.	-	.	ID=Os09t0366800-00;Name=Os09t0366800-00;Locus_id=Os09g0366800;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q69QF5 (UniProt);TENOR=Os09t0366800-00;KEGG=Os09t0366800-00
Chr09	irgsp1_rep	CDS	12081534	12081854	.	-	0	Parent=Os09t0366800-00
Chr09	irgsp1_rep	CDS	12080465	12080962	.	-	0	Parent=Os09t0366800-00
Chr09	irgsp1_rep	mRNA	12120384	12121335	.	-	.	ID=Os09t0367700-01;Name=Os09t0367700-01;Locus_id=Os09g0367700;RAP-DB Gene Symbol Synonym(s)=OsGSTU5;RAP-DB Gene Name Synonym(s)=tau class glutathione S-transferase 5;CGSNL Gene Symbol=GSTU5;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 5;Oryzabase Gene Symbol Synonym(s)=OsGSTU5;Oryzabase Gene Name Synonym(s)=tau class glutathione S-transferase 5%2C glutathione transferase U5;Note=Tau class glutathione S-transferase%2C Tolerance against sheath blight disease;Transcript_evidence=AK103316,AK120037;ORF_evidence=Q9FUE5;GO=Molecular Function: protein binding (GO:0005515);InterPro=Thioredoxin-like superfamily (IPR036249),Glutathione S-transferase%2C C-terminal domain superfamily (IPR036282),Glutathione Transferase family (IPR040079),Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal-like (IPR010987);NIAS_FLcDNA=J033125H12,002-188-D10;Manual Curation=February 28%2C 2020;Literature_PMID=32089979;Oryzabase=9523;TENOR=Os09t0367700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	12121226	12121335	.	-	.	Parent=Os09t0367700-01
Chr09	irgsp1_rep	CDS	12120539	12121225	.	-	0	Parent=Os09t0367700-01
Chr09	irgsp1_rep	three_prime_UTR	12120384	12120538	.	-	.	Parent=Os09t0367700-01
Chr09	irgsp1_rep	mRNA	12126815	12127993	.	+	.	ID=Os09t0367900-01;Name=Os09t0367900-01;Locus_id=Os09g0367900;Note=Conserved hypothetical protein.;Transcript_evidence=AK063310 (DDBJ%2C Best hit);ORF_evidence=Q6H5T9 (UniProt);NIAS_FLcDNA=001-113-G02;Expression=AK063310;TENOR=Os09t0367900-01;KEGG=Os09t0367900-01
Chr09	irgsp1_rep	five_prime_UTR	12126815	12126978	.	+	.	Parent=Os09t0367900-01
Chr09	irgsp1_rep	CDS	12126979	12126997	.	+	0	Parent=Os09t0367900-01
Chr09	irgsp1_rep	CDS	12127459	12127595	.	+	2	Parent=Os09t0367900-01
Chr09	irgsp1_rep	three_prime_UTR	12127596	12127993	.	+	.	Parent=Os09t0367900-01
Chr09	irgsp1_rep	mRNA	12126977	12127901	.	+	.	ID=Os09t0367900-02;Name=Os09t0367900-02;Locus_id=Os09g0367900;Note=Hypothetical conserved gene.;Transcript_evidence=AK061601 (DDBJ%2C Best hit);ORF_evidence=Q6H5T9 (UniProt);InterPro=Protein of unknown function DUF581 (IPR007650);NIAS_FLcDNA=001-027-E02;Expression=AK061601;TENOR=Os09t0367900-02;KEGG=Os09t0367900-02
Chr09	irgsp1_rep	five_prime_UTR	12126977	12126982	.	+	.	Parent=Os09t0367900-02
Chr09	irgsp1_rep	CDS	12126983	12127341	.	+	0	Parent=Os09t0367900-02
Chr09	irgsp1_rep	CDS	12127424	12127595	.	+	1	Parent=Os09t0367900-02
Chr09	irgsp1_rep	three_prime_UTR	12127596	12127901	.	+	.	Parent=Os09t0367900-02
Chr09	irgsp1_rep	mRNA	12145638	12145695	.	-	.	ID=Os09t0368101-00;Name=Os09t0368101-00;Locus_id=Os09g0368101;Note=Non-protein coding transcript.;Transcript_evidence=EU943375 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0368101-00
Chr09	irgsp1_rep	exon	12145638	12145695	.	-	.	Parent=Os09t0368101-00
Chr09	irgsp1_rep	mRNA	12146317	12154442	.	-	.	ID=Os09t0368200-00;Name=Os09t0368200-00;Locus_id=Os09g0368200;CGSNL Gene Symbol=PAOB;CGSNL Gene Name=POLYAMINE OXIDASE B;Oryzabase Gene Symbol Synonym(s)=PAOb%2C OsPAOb%2C OsPAO6%2C OsPAO2%2C PAO6%2C PAO2;Oryzabase Gene Name Synonym(s)=Polyamine oxidase b%2C Polyamine oxidase 6;Note=Similar to polyamine oxidase precursor.;Transcript_evidence=AK367335 (DDBJ);ORF_evidence=NP_001105106.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Flavin amine oxidase (IPR001613),Amine oxidase (IPR002937);Oryzabase=11223;TENOR=Os09t0368200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	12154386	12154442	.	-	.	Parent=Os09t0368200-00
Chr09	irgsp1_rep	CDS	12154262	12154385	.	-	0	Parent=Os09t0368200-00
Chr09	irgsp1_rep	CDS	12151197	12151446	.	-	2	Parent=Os09t0368200-00
Chr09	irgsp1_rep	CDS	12148390	12148536	.	-	1	Parent=Os09t0368200-00
Chr09	irgsp1_rep	CDS	12147573	12147828	.	-	1	Parent=Os09t0368200-00
Chr09	irgsp1_rep	CDS	12147332	12147475	.	-	0	Parent=Os09t0368200-00
Chr09	irgsp1_rep	CDS	12147065	12147214	.	-	0	Parent=Os09t0368200-00
Chr09	irgsp1_rep	CDS	12146730	12146987	.	-	0	Parent=Os09t0368200-00
Chr09	irgsp1_rep	CDS	12146539	12146620	.	-	0	Parent=Os09t0368200-00
Chr09	irgsp1_rep	CDS	12146317	12146396	.	-	2	Parent=Os09t0368200-00
Chr09	irgsp1_rep	mRNA	12146324	12151453	.	+	.	ID=Os09t0368250-00;Name=Os09t0368250-00;Locus_id=Os09g0368250;Note=Hypothetical protein.;Transcript_evidence=tplb0036e02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0368250-00
Chr09	irgsp1_rep	five_prime_UTR	12146324	12146392	.	+	.	Parent=Os09t0368250-00
Chr09	irgsp1_rep	five_prime_UTR	12146535	12146554	.	+	.	Parent=Os09t0368250-00
Chr09	irgsp1_rep	CDS	12146555	12146623	.	+	0	Parent=Os09t0368250-00
Chr09	irgsp1_rep	CDS	12146736	12146986	.	+	0	Parent=Os09t0368250-00
Chr09	irgsp1_rep	CDS	12147064	12147190	.	+	1	Parent=Os09t0368250-00
Chr09	irgsp1_rep	CDS	12147309	12147323	.	+	0	Parent=Os09t0368250-00
Chr09	irgsp1_rep	three_prime_UTR	12147324	12147454	.	+	.	Parent=Os09t0368250-00
Chr09	irgsp1_rep	three_prime_UTR	12147557	12147818	.	+	.	Parent=Os09t0368250-00
Chr09	irgsp1_rep	three_prime_UTR	12148380	12148541	.	+	.	Parent=Os09t0368250-00
Chr09	irgsp1_rep	three_prime_UTR	12151206	12151453	.	+	.	Parent=Os09t0368250-00
Chr09	irgsp1_rep	mRNA	12166644	12174941	.	+	.	ID=Os09t0368400-00;Name=Os09t0368400-00;Locus_id=Os09g0368400;Note=Hypothetical protein.;Transcript_evidence=tplb0036e02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0368400-00
Chr09	irgsp1_rep	five_prime_UTR	12166644	12166716	.	+	.	Parent=Os09t0368400-00
Chr09	irgsp1_rep	five_prime_UTR	12166879	12166975	.	+	.	Parent=Os09t0368400-00
Chr09	irgsp1_rep	five_prime_UTR	12167130	12167135	.	+	.	Parent=Os09t0368400-00
Chr09	irgsp1_rep	CDS	12167136	12167380	.	+	0	Parent=Os09t0368400-00
Chr09	irgsp1_rep	CDS	12167458	12167584	.	+	1	Parent=Os09t0368400-00
Chr09	irgsp1_rep	CDS	12167703	12167717	.	+	0	Parent=Os09t0368400-00
Chr09	irgsp1_rep	three_prime_UTR	12167718	12167848	.	+	.	Parent=Os09t0368400-00
Chr09	irgsp1_rep	three_prime_UTR	12167995	12168261	.	+	.	Parent=Os09t0368400-00
Chr09	irgsp1_rep	three_prime_UTR	12172986	12173142	.	+	.	Parent=Os09t0368400-00
Chr09	irgsp1_rep	three_prime_UTR	12174685	12174941	.	+	.	Parent=Os09t0368400-00
Chr09	irgsp1_rep	mRNA	12166727	12176968	.	-	.	ID=Os09t0368500-01;Name=Os09t0368500-01;Locus_id=Os09g0368500;RAP-DB Gene Symbol Synonym(s)=PAO7%2C OsPAO7%2C OsPAO3;RAP-DB Gene Name Synonym(s)=POLYAMINE OXIDASE 7%2C Polyamine oxidase 7;CGSNL Gene Symbol=PAO7;CGSNL Gene Name=POLYAMINE OXIDASE 7;Oryzabase Gene Symbol Synonym(s)=OsPAO7%2C OsPAO3%2C PAO3;Oryzabase Gene Name Synonym(s)=Polyamine oxidase 7;Note=Terminal catabolism-type polyamine oxidase%2C Anther development;Transcript_evidence=AK069392;ORF_evidence=Q0J290;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Flavin amine oxidase (IPR001613),NAD(P)-binding domain (IPR016040),Amine oxidase (IPR002937);NIAS_FLcDNA=J023014L10;Manual Curation=November 19%2C 2014;Literature_PMID=24634478;Oryzabase=11407;TENOR=Os09t0368500-01;KEGG=Os09t0368500-01 (EC:1.5.3.11)
Chr09	irgsp1_rep	five_prime_UTR	12176958	12176968	.	-	.	Parent=Os09t0368500-01
Chr09	irgsp1_rep	CDS	12176834	12176957	.	-	0	Parent=Os09t0368500-01
Chr09	irgsp1_rep	CDS	12174685	12174934	.	-	2	Parent=Os09t0368500-01
Chr09	irgsp1_rep	CDS	12172994	12173140	.	-	1	Parent=Os09t0368500-01
Chr09	irgsp1_rep	CDS	12168016	12168271	.	-	1	Parent=Os09t0368500-01
Chr09	irgsp1_rep	CDS	12167726	12167869	.	-	0	Parent=Os09t0368500-01
Chr09	irgsp1_rep	CDS	12167459	12167608	.	-	0	Parent=Os09t0368500-01
Chr09	irgsp1_rep	CDS	12167124	12167381	.	-	0	Parent=Os09t0368500-01
Chr09	irgsp1_rep	CDS	12166875	12166970	.	-	0	Parent=Os09t0368500-01
Chr09	irgsp1_rep	three_prime_UTR	12166727	12166874	.	-	.	Parent=Os09t0368500-01
Chr09	irgsp1_rep	mRNA	12196141	12197683	.	+	.	ID=Os09t0368850-01;Name=Os09t0368850-01;Locus_id=Os09g0368850;RAP-DB Gene Symbol Synonym(s)=OsANN10;RAP-DB Gene Name Synonym(s)=Annexin 10;CGSNL Gene Symbol=ANN8;CGSNL Gene Name=ANNEXIN 8;Oryzabase Gene Symbol Synonym(s)=OsANN8;Oryzabase Gene Name Synonym(s)=Annexin 8;Note=Annexin%2C Calcium-dependent lipid binding protein%2C Negative regulation of osmotic stress tolerance;Transcript_evidence=Inferred from literature;ORF_evidence=Q6H5M2;GO=Molecular Function: calcium ion binding (GO:0005509),Molecular Function: calcium-dependent phospholipid binding (GO:0005544);InterPro=Annexin superfamily (IPR037104),Annexin repeat (IPR018502);Manual Curation=May 22%2C 2020;Literature_PMID=32081268;Oryzabase=15471;TENOR=Os09t0368850-00;Subcellular location=plasma membrane (GO:0005886) [mainly], cell periphery (GO:0071944) [mainly], cytoplasm (GO:0005737)
Chr09	irgsp1_rep	CDS	12196141	12196210	.	+	0	Parent=Os09t0368850-01
Chr09	irgsp1_rep	CDS	12196543	12196757	.	+	2	Parent=Os09t0368850-01
Chr09	irgsp1_rep	CDS	12196801	12197019	.	+	0	Parent=Os09t0368850-01
Chr09	irgsp1_rep	CDS	12197096	12197683	.	+	0	Parent=Os09t0368850-01
Chr09	irgsp1_rep	mRNA	12202648	12208582	.	+	.	ID=Os09t0368900-00;Name=Os09t0368900-00;Locus_id=Os09g0368900;Oryzabase Gene Symbol Synonym(s)=OsEnS-126;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 126;Note=Protein of unknown function DUF632 domain containing protein.;Transcript_evidence=FJ750931 (DDBJ%2C Best hit);ORF_evidence=A3BY53 (UniProt);InterPro=Domain of unknown function DUF632 (IPR006867),Domain of unknown function DUF630 (IPR006868);Oryzabase=18418;TENOR=Os09t0368900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	12202648	12202751	.	+	.	Parent=Os09t0368900-00
Chr09	irgsp1_rep	five_prime_UTR	12203626	12203635	.	+	.	Parent=Os09t0368900-00
Chr09	irgsp1_rep	CDS	12203636	12204593	.	+	0	Parent=Os09t0368900-00
Chr09	irgsp1_rep	CDS	12204687	12204758	.	+	2	Parent=Os09t0368900-00
Chr09	irgsp1_rep	CDS	12204880	12205097	.	+	2	Parent=Os09t0368900-00
Chr09	irgsp1_rep	CDS	12207358	12207581	.	+	0	Parent=Os09t0368900-00
Chr09	irgsp1_rep	CDS	12207755	12208343	.	+	1	Parent=Os09t0368900-00
Chr09	irgsp1_rep	three_prime_UTR	12208344	12208582	.	+	.	Parent=Os09t0368900-00
Chr09	irgsp1_rep	mRNA	12216432	12218346	.	+	.	ID=Os09t0369000-01;Name=Os09t0369000-01;Locus_id=Os09g0369000;RAP-DB Gene Symbol Synonym(s)=OsDREB6;RAP-DB Gene Name Synonym(s)=dehydration-responsive element-binding protein 6;CGSNL Gene Symbol=ERF50;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 50;Oryzabase Gene Symbol Synonym(s)=OsERF#050%2C OsERF050%2C OsERF50%2C AP2/EREBP#113%2C AP2/EREBP113%2C OsDREB6;Oryzabase Gene Name Synonym(s)=ethylene response factor 50%2C APETALA2/ethylene-responsive element binding protein 113%2C dehydration-responsive element-binding protein 6;Note=A-6 type of DREB transcription factor%2C AP2/EREBP family protein%2C Positive regulation of tolerance to osmotic and cold stress;Transcript_evidence=AK070758 (truncated),AK058899 (truncated),Inferred from literature;ORF_evidence=Q7XZP8;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-binding transcription factor activity (GO:0003700);InterPro=AP2/ERF domain superfamily (IPR036955),DNA-binding domain superfamily (IPR016177),AP2/ERF domain (IPR001471);NIAS_FLcDNA=J023067F14 (truncated),001-008-A04 (truncated);Manual Curation=July 22%2C 2020;Literature_PMID=DOI:10.1007/s12374-013-0480-0;Oryzabase=10567;Expression=AK070758,AK058899;TENOR=Os09t0369000-01,Os09t0369050-01;KEGG=Os09t0369000-01,Os09t0369050-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	12216432	12216963	.	+	.	Parent=Os09t0369000-01
Chr09	irgsp1_rep	CDS	12216964	12217839	.	+	0	Parent=Os09t0369000-01
Chr09	irgsp1_rep	three_prime_UTR	12217840	12218346	.	+	.	Parent=Os09t0369000-01
Chr09	irgsp1_rep	mRNA	12251875	12254061	.	+	.	ID=Os09t0369400-01;Name=Os09t0369400-01;Locus_id=Os09g0369400;RAP-DB Gene Symbol Synonym(s)=OsTPP7;RAP-DB Gene Name Synonym(s)=trehalose-6-phosphate phosphatase 7;CGSNL Gene Symbol=TPP7;CGSNL Gene Name=TREHALOSE-6-PHOSPHATE PHOSHPHATASE 7;Oryzabase Gene Symbol Synonym(s)=OsTPP7;Oryzabase Gene Name Synonym(s)=trehalose-6-phosphate phosphatase 7;Note=Trehalose-6-phosphate phosphatase%2C Anaerobic germination tolerance;Transcript_evidence=AK288009;ORF_evidence=Q6H5L4;GO=Biological Process: trehalose biosynthetic process (GO:0005992),Molecular Function: catalytic activity (GO:0003824);InterPro=HAD superfamily (IPR023214),HAD-like superfamily (IPR036412),HAD-superfamily hydrolase%2C subfamily IIB (IPR006379),Trehalose-phosphatase (IPR003337);NIAS_FLcDNA=J075113F22;Manual Curation=July 8%2C 2020;Literature_PMID=27250677;Oryzabase=9982;TENOR=Os09t0369400-01;KEGG=Os09t0369400-01
Chr09	irgsp1_rep	five_prime_UTR	12251875	12251935	.	+	.	Parent=Os09t0369400-01
Chr09	irgsp1_rep	CDS	12251936	12252211	.	+	0	Parent=Os09t0369400-01
Chr09	irgsp1_rep	CDS	12252311	12252451	.	+	0	Parent=Os09t0369400-01
Chr09	irgsp1_rep	CDS	12252533	12252865	.	+	0	Parent=Os09t0369400-01
Chr09	irgsp1_rep	CDS	12252948	12253095	.	+	0	Parent=Os09t0369400-01
Chr09	irgsp1_rep	CDS	12253175	12253245	.	+	2	Parent=Os09t0369400-01
Chr09	irgsp1_rep	CDS	12253460	12253552	.	+	0	Parent=Os09t0369400-01
Chr09	irgsp1_rep	CDS	12253636	12253701	.	+	0	Parent=Os09t0369400-01
Chr09	irgsp1_rep	three_prime_UTR	12253702	12254061	.	+	.	Parent=Os09t0369400-01
Chr09	irgsp1_rep	mRNA	12263316	12267430	.	-	.	ID=Os09t0369500-01;Name=Os09t0369500-01;Locus_id=Os09g0369500;Oryzabase Gene Symbol Synonym(s)=OsEnS-127;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 127;Note=Conserved hypothetical protein.;Transcript_evidence=AK105479 (DDBJ%2C Best hit);ORF_evidence=B8BEX5 (UniProt);NIAS_FLcDNA=001-127-A10;Oryzabase=18419;Expression=AK105479;TENOR=Os09t0369500-01;KEGG=Os09t0369500-01
Chr09	irgsp1_rep	five_prime_UTR	12267340	12267430	.	-	.	Parent=Os09t0369500-01
Chr09	irgsp1_rep	five_prime_UTR	12267007	12267029	.	-	.	Parent=Os09t0369500-01
Chr09	irgsp1_rep	CDS	12266574	12267006	.	-	0	Parent=Os09t0369500-01
Chr09	irgsp1_rep	CDS	12263448	12264208	.	-	2	Parent=Os09t0369500-01
Chr09	irgsp1_rep	three_prime_UTR	12263316	12263447	.	-	.	Parent=Os09t0369500-01
Chr09	irgsp1_rep	mRNA	12266292	12267420	.	-	.	ID=Os09t0369500-02;Name=Os09t0369500-02;Locus_id=Os09g0369500;Oryzabase Gene Symbol Synonym(s)=OsEnS-127;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 127;Note=Hypothetical conserved gene.;Transcript_evidence=AK105322 (DDBJ%2C Best hit);ORF_evidence=Q6H5L2 (UniProt);NIAS_FLcDNA=001-117-G10;Oryzabase=18419;Expression=AK105322;TENOR=Os09t0369500-02;KEGG=Os09t0369500-02
Chr09	irgsp1_rep	five_prime_UTR	12267340	12267420	.	-	.	Parent=Os09t0369500-02
Chr09	irgsp1_rep	five_prime_UTR	12267007	12267029	.	-	.	Parent=Os09t0369500-02
Chr09	irgsp1_rep	CDS	12266527	12267006	.	-	0	Parent=Os09t0369500-02
Chr09	irgsp1_rep	three_prime_UTR	12266292	12266526	.	-	.	Parent=Os09t0369500-02
Chr09	irgsp1_rep	mRNA	12284023	12285045	.	-	.	ID=Os09t0369750-00;Name=Os09t0369750-00;Locus_id=Os09g0369750;Note=Hypothetical gene.;Transcript_evidence=BT017107 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0369750-00
Chr09	irgsp1_rep	five_prime_UTR	12285044	12285045	.	-	.	Parent=Os09t0369750-00
Chr09	irgsp1_rep	CDS	12284023	12285043	.	-	0	Parent=Os09t0369750-00
Chr09	irgsp1_rep	mRNA	12284065	12285287	.	+	.	ID=Os09t0370000-00;Name=Os09t0370000-00;Locus_id=Os09g0370000;Note=Conserved hypothetical protein.;Transcript_evidence=AK363683 (DDBJ);ORF_evidence=NP_001063016.1 (RefSeq);TENOR=Os09t0370000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	12284065	12284152	.	+	.	Parent=Os09t0370000-00
Chr09	irgsp1_rep	CDS	12284153	12285277	.	+	0	Parent=Os09t0370000-00
Chr09	irgsp1_rep	three_prime_UTR	12285278	12285287	.	+	.	Parent=Os09t0370000-00
Chr09	irgsp1_rep	mRNA	12290004	12294955	.	-	.	ID=Os09t0370200-01;Name=Os09t0370200-01;Locus_id=Os09g0370200;Oryzabase Gene Name Synonym(s)=SCO1 protein;Note=Copper chaperone SCO1/SenC domain containing protein.;Transcript_evidence=AK064804 (DDBJ%2C Best hit);ORF_evidence=NP_001149062.1 (RefSeq);InterPro=Copper chaperone SCO1/SenC (IPR003782),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=J013000D13;Oryzabase=17704;Expression=AK064804;TENOR=Os09t0370200-01;KEGG=Os09t0370200-01
Chr09	irgsp1_rep	five_prime_UTR	12294873	12294955	.	-	.	Parent=Os09t0370200-01
Chr09	irgsp1_rep	CDS	12294775	12294872	.	-	0	Parent=Os09t0370200-01
Chr09	irgsp1_rep	CDS	12293770	12293899	.	-	1	Parent=Os09t0370200-01
Chr09	irgsp1_rep	CDS	12293489	12293564	.	-	0	Parent=Os09t0370200-01
Chr09	irgsp1_rep	CDS	12292743	12292949	.	-	2	Parent=Os09t0370200-01
Chr09	irgsp1_rep	CDS	12291392	12291481	.	-	2	Parent=Os09t0370200-01
Chr09	irgsp1_rep	CDS	12291174	12291306	.	-	2	Parent=Os09t0370200-01
Chr09	irgsp1_rep	CDS	12290977	12291097	.	-	1	Parent=Os09t0370200-01
Chr09	irgsp1_rep	three_prime_UTR	12290954	12290976	.	-	.	Parent=Os09t0370200-01
Chr09	irgsp1_rep	three_prime_UTR	12290004	12290217	.	-	.	Parent=Os09t0370200-01
Chr09	irgsp1_rep	mRNA	12295674	12296730	.	-	.	ID=Os09t0370300-01;Name=Os09t0370300-01;Locus_id=Os09g0370300;CGSNL Gene Symbol=SDH2-2;CGSNL Gene Name=SUCCINATE DEHYDROGENASE SUBUNIT 2-2;Oryzabase Gene Symbol Synonym(s)=sdh2-2;Oryzabase Gene Name Synonym(s)=mitochondrial Complex II subunit SDH2-2;Note=Similar to Iron sulfur subunit of succinate dehydrogenase (Truncated) and ribosomal protein S14 precursor.;Transcript_evidence=AK108199 (DDBJ%2C Best hit);ORF_evidence=NP_680465.2 (RefSeq);GO=Biological Process: tricarboxylic acid cycle (GO:0006099),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: iron-sulfur cluster binding (GO:0051536),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=Ferredoxin (IPR001041),Succinate dehydrogenase/fumarate reductase iron-sulphur protein (IPR004489),2Fe-2S ferredoxin%2C iron-sulphur binding site (IPR006058),Alpha-helical ferredoxin (IPR009051),Fumarate reductase%2C C-terminal (IPR012285),Beta-grasp fold%2C ferredoxin-type (IPR012675),4Fe-4S ferredoxin%2C iron-sulpur binding domain (IPR017896),4Fe-4S ferredoxin%2C iron-sulphur binding%2C conserved site (IPR017900);NIAS_FLcDNA=002-140-C10;Oryzabase=20544;Expression=AK108199;TENOR=Os09t0370300-01;KEGG=Os09t0370300-01 (EC:1.3.5.1)
Chr09	irgsp1_rep	five_prime_UTR	12296707	12296730	.	-	.	Parent=Os09t0370300-01
Chr09	irgsp1_rep	CDS	12295771	12296706	.	-	0	Parent=Os09t0370300-01
Chr09	irgsp1_rep	three_prime_UTR	12295674	12295770	.	-	.	Parent=Os09t0370300-01
Chr09	irgsp1_rep	mRNA	12319346	12321133	.	+	.	ID=Os09t0370500-00;Name=Os09t0370500-00;Locus_id=Os09g0370500;Oryzabase Gene Symbol Synonym(s)=OsVQ35;Oryzabase Gene Name Synonym(s)=VQ motif-containing protein 35;Note=VQ domain containing protein.;Transcript_evidence=EU972533 (DDBJ);ORF_evidence=NP_001175804.1 (RefSeq);InterPro=VQ (IPR008889);Oryzabase=13651;TENOR=Os09t0370500-00;KEGG=Os09t0370500-00
Chr09	irgsp1_rep	CDS	12319346	12320983	.	+	0	Parent=Os09t0370500-00
Chr09	irgsp1_rep	three_prime_UTR	12320984	12321133	.	+	.	Parent=Os09t0370500-00
Chr09	irgsp1_rep	mRNA	12345752	12349518	.	+	.	ID=Os09t0371000-01;Name=Os09t0371000-01;Locus_id=Os09g0371000;Note=Major facilitator superfamily protein.;Transcript_evidence=AK109547 (DDBJ%2C Best hit);ORF_evidence=NP_001151945.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=002-120-E09;Expression=AK109547;TENOR=Os09t0371000-01;KEGG=Os09t0371000-01
Chr09	irgsp1_rep	five_prime_UTR	12345752	12345875	.	+	.	Parent=Os09t0371000-01
Chr09	irgsp1_rep	CDS	12345876	12346178	.	+	0	Parent=Os09t0371000-01
Chr09	irgsp1_rep	CDS	12347599	12348359	.	+	0	Parent=Os09t0371000-01
Chr09	irgsp1_rep	CDS	12348921	12349419	.	+	1	Parent=Os09t0371000-01
Chr09	irgsp1_rep	three_prime_UTR	12349420	12349518	.	+	.	Parent=Os09t0371000-01
Chr09	irgsp1_rep	mRNA	12355824	12358983	.	+	.	ID=Os09t0371100-00;Name=Os09t0371100-00;Locus_id=Os09g0371100;Note=Similar to hydrogen symporter.;Transcript_evidence=AK367941 (DDBJ);ORF_evidence=NP_177937.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);TENOR=Os09t0371100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	12355824	12355828	.	+	.	Parent=Os09t0371100-00
Chr09	irgsp1_rep	CDS	12355829	12356146	.	+	0	Parent=Os09t0371100-00
Chr09	irgsp1_rep	CDS	12357540	12358278	.	+	0	Parent=Os09t0371100-00
Chr09	irgsp1_rep	CDS	12358469	12358983	.	+	2	Parent=Os09t0371100-00
Chr09	irgsp1_rep	mRNA	12360645	12363883	.	+	.	ID=Os09t0371200-01;Name=Os09t0371200-01;Locus_id=Os09g0371200;Note=Major facilitator superfamily protein.;Transcript_evidence=AK243115 (DDBJ%2C Best hit);ORF_evidence=NP_196581.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J100027I16;TENOR=Os09t0371200-01;KEGG=Os09t0371200-01
Chr09	irgsp1_rep	five_prime_UTR	12360645	12360672	.	+	.	Parent=Os09t0371200-01
Chr09	irgsp1_rep	CDS	12360673	12361074	.	+	0	Parent=Os09t0371200-01
Chr09	irgsp1_rep	CDS	12362241	12362995	.	+	0	Parent=Os09t0371200-01
Chr09	irgsp1_rep	CDS	12363137	12363626	.	+	1	Parent=Os09t0371200-01
Chr09	irgsp1_rep	three_prime_UTR	12363627	12363883	.	+	.	Parent=Os09t0371200-01
Chr09	irgsp1_rep	mRNA	12364631	12365199	.	-	.	ID=Os09t0371250-00;Name=Os09t0371250-00;Locus_id=Os09g0371250;Note=Non-protein coding transcript.;Transcript_evidence=EU943671 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0371250-00
Chr09	irgsp1_rep	exon	12364631	12365199	.	-	.	Parent=Os09t0371250-00
Chr09	irgsp1_rep	mRNA	12364797	12367415	.	+	.	ID=Os09t0371300-00;Name=Os09t0371300-00;Locus_id=Os09g0371300;Note=Similar to predicted protein.;Transcript_evidence=BT036089 (DDBJ);ORF_evidence=NP_001151945.1 (RefSeq);InterPro=Major facilitator superfamily domain%2C general substrate transporter (IPR016196);TENOR=Os09t0371300-00;KEGG=Os09t0371300-00
Chr09	irgsp1_rep	five_prime_UTR	12364797	12364800	.	+	.	Parent=Os09t0371300-00
Chr09	irgsp1_rep	CDS	12364801	12365197	.	+	0	Parent=Os09t0371300-00
Chr09	irgsp1_rep	CDS	12366011	12366755	.	+	2	Parent=Os09t0371300-00
Chr09	irgsp1_rep	CDS	12366851	12367415	.	+	1	Parent=Os09t0371300-00
Chr09	irgsp1_rep	mRNA	12369674	12371236	.	+	.	ID=Os09t0371400-00;Name=Os09t0371400-00;Locus_id=Os09g0371400;Note=Similar to predicted protein.;Transcript_evidence=AK357414 (DDBJ);ORF_evidence=NP_177937.1 (RefSeq);InterPro=Major facilitator superfamily domain%2C general substrate transporter (IPR016196);TENOR=Os09t0371400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	12369674	12370013	.	+	0	Parent=Os09t0371400-00
Chr09	irgsp1_rep	CDS	12370098	12371209	.	+	2	Parent=Os09t0371400-00
Chr09	irgsp1_rep	three_prime_UTR	12371210	12371236	.	+	.	Parent=Os09t0371400-00
Chr09	irgsp1_rep	mRNA	12377367	12378162	.	-	.	ID=Os09t0371625-00;Name=Os09t0371625-00;Locus_id=Os09g0371625;Note=Hypothetical protein.;Transcript_evidence=tplb0022c13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0371625-00
Chr09	irgsp1_rep	CDS	12377367	12378162	.	-	0	Parent=Os09t0371625-00
Chr09	irgsp1_rep	mRNA	12378170	12378525	.	+	.	ID=Os09t0371650-00;Name=Os09t0371650-00;Locus_id=Os09g0371650;Note=Non-protein coding transcript.;Transcript_evidence=CT835861 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os09t0371650-00
Chr09	irgsp1_rep	exon	12378170	12378525	.	+	.	Parent=Os09t0371650-00
Chr09	irgsp1_rep	mRNA	12383168	12387955	.	+	.	ID=Os09t0371700-01;Name=Os09t0371700-01;Locus_id=Os09g0371700;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=AK063842 (DDBJ%2C Best hit);ORF_evidence=B9G388 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=001-122-C02;Expression=AK063842;TENOR=Os09t0371700-01;KEGG=Os09t0371700-01
Chr09	irgsp1_rep	five_prime_UTR	12383168	12383198	.	+	.	Parent=Os09t0371700-01
Chr09	irgsp1_rep	CDS	12383199	12383312	.	+	0	Parent=Os09t0371700-01
Chr09	irgsp1_rep	CDS	12387077	12387604	.	+	0	Parent=Os09t0371700-01
Chr09	irgsp1_rep	three_prime_UTR	12387605	12387955	.	+	.	Parent=Os09t0371700-01
Chr09	irgsp1_rep	mRNA	12389173	12392344	.	+	.	ID=Os09t0371800-00;Name=Os09t0371800-00;Locus_id=Os09g0371800;Note=Conserved hypothetical protein.;Transcript_evidence=BT036350 (DDBJ);ORF_evidence=Q6H4E2 (UniProt);TENOR=Os09t0371800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	12389173	12389964	.	+	0	Parent=Os09t0371800-00
Chr09	irgsp1_rep	CDS	12390189	12390317	.	+	0	Parent=Os09t0371800-00
Chr09	irgsp1_rep	three_prime_UTR	12390318	12390369	.	+	.	Parent=Os09t0371800-00
Chr09	irgsp1_rep	three_prime_UTR	12391160	12391323	.	+	.	Parent=Os09t0371800-00
Chr09	irgsp1_rep	three_prime_UTR	12391883	12392144	.	+	.	Parent=Os09t0371800-00
Chr09	irgsp1_rep	three_prime_UTR	12392239	12392344	.	+	.	Parent=Os09t0371800-00
Chr09	irgsp1_rep	mRNA	12397884	12399092	.	+	.	ID=Os09t0372100-02;Name=Os09t0372100-02;Locus_id=Os09g0372100;Note=Non-protein coding transcript.;Transcript_evidence=AK111963 (DDBJ%2C Best hit),AK112049 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=006-201-A01,001-102-C09;TENOR=Os09t0372100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	exon	12397884	12399092	.	+	.	Parent=Os09t0372100-02
Chr09	irgsp1_rep	mRNA	12407427	12413260	.	+	.	ID=Os09t0372400-01;Name=Os09t0372400-01;Locus_id=Os09g0372400;Note=Similar to cDNA clone:J033042L23%2C full insert sequence.;Transcript_evidence=AK064341 (DDBJ%2C Best hit);ORF_evidence=B7ERU0 (UniProt);NIAS_FLcDNA=002-107-H04;TENOR=Os09t0372400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	12407427	12407490	.	+	.	Parent=Os09t0372400-01
Chr09	irgsp1_rep	CDS	12407491	12407628	.	+	0	Parent=Os09t0372400-01
Chr09	irgsp1_rep	CDS	12407773	12407916	.	+	0	Parent=Os09t0372400-01
Chr09	irgsp1_rep	CDS	12407951	12407971	.	+	0	Parent=Os09t0372400-01
Chr09	irgsp1_rep	CDS	12408471	12408596	.	+	0	Parent=Os09t0372400-01
Chr09	irgsp1_rep	CDS	12408686	12408844	.	+	0	Parent=Os09t0372400-01
Chr09	irgsp1_rep	CDS	12410037	12410166	.	+	0	Parent=Os09t0372400-01
Chr09	irgsp1_rep	CDS	12410302	12410343	.	+	2	Parent=Os09t0372400-01
Chr09	irgsp1_rep	CDS	12411258	12411557	.	+	2	Parent=Os09t0372400-01
Chr09	irgsp1_rep	CDS	12411684	12411735	.	+	2	Parent=Os09t0372400-01
Chr09	irgsp1_rep	CDS	12411908	12411985	.	+	1	Parent=Os09t0372400-01
Chr09	irgsp1_rep	CDS	12412884	12412980	.	+	1	Parent=Os09t0372400-01
Chr09	irgsp1_rep	three_prime_UTR	12412981	12413260	.	+	.	Parent=Os09t0372400-01
Chr09	irgsp1_rep	mRNA	12407487	12413260	.	+	.	ID=Os09t0372400-02;Name=Os09t0372400-02;Locus_id=Os09g0372400;Note=Conserved hypothetical protein.;Transcript_evidence=AK101491 (DDBJ%2C Best hit);ORF_evidence=A2Z0K4 (UniProt);NIAS_FLcDNA=J033042L23;Expression=AK101491;TENOR=Os09t0372400-02;KEGG=Os09t0372400-02
Chr09	irgsp1_rep	five_prime_UTR	12407487	12407527	.	+	.	Parent=Os09t0372400-02
Chr09	irgsp1_rep	CDS	12407528	12407628	.	+	0	Parent=Os09t0372400-02
Chr09	irgsp1_rep	CDS	12407773	12407971	.	+	1	Parent=Os09t0372400-02
Chr09	irgsp1_rep	CDS	12408471	12408596	.	+	0	Parent=Os09t0372400-02
Chr09	irgsp1_rep	CDS	12408686	12408844	.	+	0	Parent=Os09t0372400-02
Chr09	irgsp1_rep	CDS	12410037	12410166	.	+	0	Parent=Os09t0372400-02
Chr09	irgsp1_rep	CDS	12410302	12410343	.	+	2	Parent=Os09t0372400-02
Chr09	irgsp1_rep	CDS	12411258	12411557	.	+	2	Parent=Os09t0372400-02
Chr09	irgsp1_rep	CDS	12411684	12411735	.	+	2	Parent=Os09t0372400-02
Chr09	irgsp1_rep	CDS	12411908	12411985	.	+	1	Parent=Os09t0372400-02
Chr09	irgsp1_rep	CDS	12412884	12412980	.	+	1	Parent=Os09t0372400-02
Chr09	irgsp1_rep	three_prime_UTR	12412981	12413260	.	+	.	Parent=Os09t0372400-02
Chr09	irgsp1_rep	mRNA	12428221	12430823	.	+	.	ID=Os09t0372700-01;Name=Os09t0372700-01;Locus_id=Os09g0372700;Note=Similar to ASC1-like protein 1.;Transcript_evidence=AK067111 (DDBJ%2C Best hit);ORF_evidence=NP_001149372.1 (RefSeq);NIAS_FLcDNA=J013095J15;TENOR=Os09t0372700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	12428221	12428521	.	+	.	Parent=Os09t0372700-01
Chr09	irgsp1_rep	CDS	12428522	12428734	.	+	0	Parent=Os09t0372700-01
Chr09	irgsp1_rep	three_prime_UTR	12428735	12430342	.	+	.	Parent=Os09t0372700-01
Chr09	irgsp1_rep	three_prime_UTR	12430435	12430823	.	+	.	Parent=Os09t0372700-01
Chr09	irgsp1_rep	mRNA	12431007	12434574	.	-	.	ID=Os09t0372800-01;Name=Os09t0372800-01;Locus_id=Os09g0372800;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK112000 (DDBJ%2C Best hit);ORF_evidence=B6T7G8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-035-B07;Expression=AK112000;TENOR=Os09t0372800-01;KEGG=Os09t0372800-01 (EC:2.7.11.1)
Chr09	irgsp1_rep	five_prime_UTR	12434459	12434574	.	-	.	Parent=Os09t0372800-01
Chr09	irgsp1_rep	CDS	12434266	12434458	.	-	0	Parent=Os09t0372800-01
Chr09	irgsp1_rep	CDS	12433723	12433865	.	-	2	Parent=Os09t0372800-01
Chr09	irgsp1_rep	CDS	12433220	12433360	.	-	0	Parent=Os09t0372800-01
Chr09	irgsp1_rep	CDS	12432507	12432692	.	-	0	Parent=Os09t0372800-01
Chr09	irgsp1_rep	CDS	12432001	12432125	.	-	0	Parent=Os09t0372800-01
Chr09	irgsp1_rep	CDS	12431263	12431488	.	-	1	Parent=Os09t0372800-01
Chr09	irgsp1_rep	three_prime_UTR	12431007	12431262	.	-	.	Parent=Os09t0372800-01
Chr09	irgsp1_rep	mRNA	12431035	12434545	.	-	.	ID=Os09t0372800-02;Name=Os09t0372800-02;Locus_id=Os09g0372800;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK099105 (DDBJ%2C Best hit);ORF_evidence=B6T7G8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023026N24;Expression=AK099105;TENOR=Os09t0372800-02;KEGG=Os09t0372800-02 (EC:2.7.11.1)
Chr09	irgsp1_rep	five_prime_UTR	12434459	12434545	.	-	.	Parent=Os09t0372800-02
Chr09	irgsp1_rep	CDS	12434266	12434458	.	-	0	Parent=Os09t0372800-02
Chr09	irgsp1_rep	CDS	12433723	12433865	.	-	2	Parent=Os09t0372800-02
Chr09	irgsp1_rep	CDS	12433220	12433360	.	-	0	Parent=Os09t0372800-02
Chr09	irgsp1_rep	CDS	12432507	12432692	.	-	0	Parent=Os09t0372800-02
Chr09	irgsp1_rep	CDS	12432001	12432125	.	-	0	Parent=Os09t0372800-02
Chr09	irgsp1_rep	CDS	12431263	12431488	.	-	1	Parent=Os09t0372800-02
Chr09	irgsp1_rep	three_prime_UTR	12431035	12431262	.	-	.	Parent=Os09t0372800-02
Chr09	irgsp1_rep	mRNA	12437162	12439216	.	-	.	ID=Os09t0372900-01;Name=Os09t0372900-01;Locus_id=Os09g0372900;Oryzabase Gene Symbol Synonym(s)=OsFbox482%2C Os_F0167;Oryzabase Gene Name Synonym(s)=F-box protein 482;Note=Hypothetical conserved gene.;Transcript_evidence=AK100129 (DDBJ%2C Best hit);ORF_evidence=Q6H4I3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated domain%2C type 3 (IPR013187),Galactose oxidase%2C beta-propeller (IPR015916),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023009I10;Oryzabase=17252;TENOR=Os09t0372900-01
Chr09	irgsp1_rep	five_prime_UTR	12439080	12439216	.	-	.	Parent=Os09t0372900-01
Chr09	irgsp1_rep	five_prime_UTR	12438572	12438655	.	-	.	Parent=Os09t0372900-01
Chr09	irgsp1_rep	five_prime_UTR	12438452	12438463	.	-	.	Parent=Os09t0372900-01
Chr09	irgsp1_rep	CDS	12437336	12438451	.	-	0	Parent=Os09t0372900-01
Chr09	irgsp1_rep	three_prime_UTR	12437162	12437335	.	-	.	Parent=Os09t0372900-01
Chr09	irgsp1_rep	mRNA	12436991	12439170	.	-	.	ID=Os09t0372900-02;Name=Os09t0372900-02;Locus_id=Os09g0372900;Oryzabase Gene Symbol Synonym(s)=OsFbox482%2C Os_F0167;Oryzabase Gene Name Synonym(s)=F-box protein 482;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK059785 (DDBJ%2C Best hit);ORF_evidence=Q6H4I3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated domain%2C type 3 (IPR013187),Galactose oxidase%2C beta-propeller (IPR015916),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=006-204-D07;Oryzabase=17252;Expression=AK059785;TENOR=Os09t0372900-02;KEGG=Os09t0372900-02
Chr09	irgsp1_rep	five_prime_UTR	12439080	12439170	.	-	.	Parent=Os09t0372900-02
Chr09	irgsp1_rep	five_prime_UTR	12438579	12438655	.	-	.	Parent=Os09t0372900-02
Chr09	irgsp1_rep	CDS	12438572	12438578	.	-	0	Parent=Os09t0372900-02
Chr09	irgsp1_rep	CDS	12437336	12438468	.	-	2	Parent=Os09t0372900-02
Chr09	irgsp1_rep	three_prime_UTR	12436991	12437335	.	-	.	Parent=Os09t0372900-02
Chr09	irgsp1_rep	mRNA	12437162	12439170	.	-	.	ID=Os09t0372900-03;Name=Os09t0372900-03;Locus_id=Os09g0372900;Oryzabase Gene Symbol Synonym(s)=OsFbox482%2C Os_F0167;Oryzabase Gene Name Synonym(s)=F-box protein 482;Note=Hypothetical conserved gene.;Transcript_evidence=AK067586 (DDBJ%2C Best hit);ORF_evidence=A2Z0L0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated domain%2C type 3 (IPR013187),Galactose oxidase%2C beta-propeller (IPR015916),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013112A11;Oryzabase=17252;TENOR=Os09t0372900-03
Chr09	irgsp1_rep	five_prime_UTR	12439080	12439170	.	-	.	Parent=Os09t0372900-03
Chr09	irgsp1_rep	five_prime_UTR	12438572	12438655	.	-	.	Parent=Os09t0372900-03
Chr09	irgsp1_rep	five_prime_UTR	12438452	12438463	.	-	.	Parent=Os09t0372900-03
Chr09	irgsp1_rep	CDS	12437336	12438451	.	-	0	Parent=Os09t0372900-03
Chr09	irgsp1_rep	three_prime_UTR	12437162	12437335	.	-	.	Parent=Os09t0372900-03
Chr09	irgsp1_rep	mRNA	12443393	12445866	.	-	.	ID=Os09t0373000-01;Name=Os09t0373000-01;Locus_id=Os09g0373000;Note=Similar to Brain protein 44-like protein (PNAS-115).;Transcript_evidence=AK058870 (DDBJ%2C Best hit);ORF_evidence=NP_001152474.1 (RefSeq);InterPro=Uncharacterised protein family UPF0041 (IPR005336);NIAS_FLcDNA=001-006-E05;Expression=AK058870;TENOR=Os09t0373000-01;KEGG=Os09t0373000-01
Chr09	irgsp1_rep	five_prime_UTR	12445808	12445866	.	-	.	Parent=Os09t0373000-01
Chr09	irgsp1_rep	five_prime_UTR	12445454	12445490	.	-	.	Parent=Os09t0373000-01
Chr09	irgsp1_rep	CDS	12445358	12445453	.	-	0	Parent=Os09t0373000-01
Chr09	irgsp1_rep	CDS	12444090	12444144	.	-	0	Parent=Os09t0373000-01
Chr09	irgsp1_rep	CDS	12443837	12443972	.	-	2	Parent=Os09t0373000-01
Chr09	irgsp1_rep	CDS	12443658	12443694	.	-	1	Parent=Os09t0373000-01
Chr09	irgsp1_rep	three_prime_UTR	12443393	12443657	.	-	.	Parent=Os09t0373000-01
Chr09	irgsp1_rep	mRNA	12446389	12446988	.	+	.	ID=Os09t0373100-00;Name=Os09t0373100-00;Locus_id=Os09g0373100;Note=Conserved hypothetical protein.;Transcript_evidence=AK062313 (DDBJ%2C Secondary hit);ORF_evidence=NP_001175806.1 (RefSeq);Expression=AK062313;TENOR=Os09t0373100-00;KEGG=Os09t0373100-00
Chr09	irgsp1_rep	five_prime_UTR	12446389	12446420	.	+	.	Parent=Os09t0373100-00
Chr09	irgsp1_rep	CDS	12446421	12446762	.	+	0	Parent=Os09t0373100-00
Chr09	irgsp1_rep	three_prime_UTR	12446763	12446988	.	+	.	Parent=Os09t0373100-00
Chr09	irgsp1_rep	mRNA	12491057	12494344	.	+	.	ID=Os09t0373750-01;Name=Os09t0373750-01;Locus_id=Os09g0373750;Note=Hypothetical gene.;Transcript_evidence=AK288809 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090071N20;TENOR=Os09t0373750-01;KEGG=Os09t0373750-01
Chr09	irgsp1_rep	five_prime_UTR	12491057	12493351	.	+	.	Parent=Os09t0373750-01
Chr09	irgsp1_rep	CDS	12493352	12493573	.	+	0	Parent=Os09t0373750-01
Chr09	irgsp1_rep	three_prime_UTR	12493574	12494344	.	+	.	Parent=Os09t0373750-01
Chr09	irgsp1_rep	mRNA	12494660	12497644	.	-	.	ID=Os09t0373800-00;Name=Os09t0373800-00;Locus_id=Os09g0373800;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=EU974885 (DDBJ);ORF_evidence=A3BZT3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),EGF-like calcium-binding (IPR001881),Epidermal growth factor-like (IPR006210),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),EGF-like calcium-binding%2C conserved site (IPR018097);TENOR=Os09t0373800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	12497628	12497644	.	-	.	Parent=Os09t0373800-00
Chr09	irgsp1_rep	CDS	12497438	12497627	.	-	0	Parent=Os09t0373800-00
Chr09	irgsp1_rep	CDS	12497195	12497353	.	-	2	Parent=Os09t0373800-00
Chr09	irgsp1_rep	CDS	12495253	12495740	.	-	2	Parent=Os09t0373800-00
Chr09	irgsp1_rep	three_prime_UTR	12494660	12495252	.	-	.	Parent=Os09t0373800-00
Chr09	irgsp1_rep	mRNA	12521706	12522061	.	-	.	ID=Os09t0374700-00;Name=Os09t0374700-00;Locus_id=Os09g0374700;Note=Conserved hypothetical protein.;Transcript_evidence=FP097651 (DDBJ);ORF_evidence=Q6H4G8 (UniProt);TENOR=Os09t0374700-00
Chr09	irgsp1_rep	CDS	12521762	12522061	.	-	0	Parent=Os09t0374700-00
Chr09	irgsp1_rep	three_prime_UTR	12521706	12521761	.	-	.	Parent=Os09t0374700-00
Chr09	irgsp1_rep	mRNA	12536561	12539847	.	+	.	ID=Os09t0374900-00;Name=Os09t0374900-00;Locus_id=Os09g0374900;Oryzabase Gene Symbol Synonym(s)=OsSTRL18%2C STRL18;Oryzabase Gene Name Synonym(s)=STR-like 18;Note=Six-bladed beta-propeller%2C TolB-like domain containing protein.;Transcript_evidence=AK375763 (DDBJ);ORF_evidence=NP_001150769.1 (RefSeq);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: strictosidine synthase activity (GO:0016844);InterPro=Six-bladed beta-propeller%2C TolB-like (IPR011042),Strictosidine synthase%2C conserved region (IPR018119);Oryzabase=21798;TENOR=Os09t0374900-00;KEGG=Os09t0374900-00
Chr09	irgsp1_rep	CDS	12536561	12536919	.	+	0	Parent=Os09t0374900-00
Chr09	irgsp1_rep	CDS	12537004	12537279	.	+	1	Parent=Os09t0374900-00
Chr09	irgsp1_rep	CDS	12539334	12539847	.	+	1	Parent=Os09t0374900-00
Chr09	irgsp1_rep	mRNA	12540619	12544907	.	-	.	ID=Os09t0375000-01;Name=Os09t0375000-01;Locus_id=Os09g0375000;Oryzabase Gene Symbol Synonym(s)=OsEno1%2C Eno1;Oryzabase Gene Name Synonym(s)=enolase 1;Note=Enolase (EC 4.2.1.11) (Fragment).;Transcript_evidence=AK243111 (DDBJ%2C Best hit);ORF_evidence=A2Z0L8 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Cellular Component: phosphopyruvate hydratase complex (GO:0000015),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: phosphopyruvate hydratase activity (GO:0004634);InterPro=Enolase (IPR000941),Enolase%2C conserved site (IPR020809),Enolase%2C C-terminal (IPR020810),Enolase%2C N-terminal (IPR020811);NIAS_FLcDNA=J100026K04;Oryzabase=21726;TENOR=Os09t0375000-01;KEGG=Os09t0375000-01 (EC:4.2.1.11)
Chr09	irgsp1_rep	five_prime_UTR	12544790	12544907	.	-	.	Parent=Os09t0375000-01
Chr09	irgsp1_rep	CDS	12544395	12544789	.	-	0	Parent=Os09t0375000-01
Chr09	irgsp1_rep	CDS	12542692	12542999	.	-	1	Parent=Os09t0375000-01
Chr09	irgsp1_rep	CDS	12542201	12542355	.	-	2	Parent=Os09t0375000-01
Chr09	irgsp1_rep	CDS	12541788	12542105	.	-	0	Parent=Os09t0375000-01
Chr09	irgsp1_rep	CDS	12541334	12541480	.	-	0	Parent=Os09t0375000-01
Chr09	irgsp1_rep	CDS	12541189	12541239	.	-	0	Parent=Os09t0375000-01
Chr09	irgsp1_rep	CDS	12540977	12541042	.	-	0	Parent=Os09t0375000-01
Chr09	irgsp1_rep	three_prime_UTR	12540619	12540976	.	-	.	Parent=Os09t0375000-01
Chr09	irgsp1_rep	mRNA	12542245	12542880	.	+	.	ID=Os09t0375050-00;Name=Os09t0375050-00;Locus_id=Os09g0375050;Note=Non-protein coding transcript.;Transcript_evidence=BT084318 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0375050-00
Chr09	irgsp1_rep	exon	12542245	12542350	.	+	.	Parent=Os09t0375050-00
Chr09	irgsp1_rep	exon	12542688	12542880	.	+	.	Parent=Os09t0375050-00
Chr09	irgsp1_rep	mRNA	12545694	12550314	.	-	.	ID=Os09t0375100-01;Name=Os09t0375100-01;Locus_id=Os09g0375100;Oryzabase Gene Symbol Synonym(s)=OsHSBP1;Oryzabase Gene Name Synonym(s)=HSF-binding protein 1;Note=Heat shock factor-binding protein 1.;Transcript_evidence=AK066159 (DDBJ%2C Best hit);ORF_evidence=NP_001105090.1 (RefSeq);InterPro=Heat shock factor binding 1 (IPR009643);NIAS_FLcDNA=J013051A10;Oryzabase=13447;Expression=AK066159;TENOR=Os09t0375100-01;KEGG=Os09t0375100-01
Chr09	irgsp1_rep	five_prime_UTR	12550208	12550314	.	-	.	Parent=Os09t0375100-01
Chr09	irgsp1_rep	five_prime_UTR	12547812	12547865	.	-	.	Parent=Os09t0375100-01
Chr09	irgsp1_rep	five_prime_UTR	12546224	12547385	.	-	.	Parent=Os09t0375100-01
Chr09	irgsp1_rep	CDS	12545957	12546223	.	-	0	Parent=Os09t0375100-01
Chr09	irgsp1_rep	three_prime_UTR	12545694	12545956	.	-	.	Parent=Os09t0375100-01
Chr09	irgsp1_rep	mRNA	12545719	12550250	.	-	.	ID=Os09t0375100-02;Name=Os09t0375100-02;Locus_id=Os09g0375100;RAP-DB Gene Symbol Synonym(s)=OsHSBP1;RAP-DB Gene Name Synonym(s)=HSF-binding protein 1;Oryzabase Gene Symbol Synonym(s)=OsHSBP1;Oryzabase Gene Name Synonym(s)=HSF-binding protein 1;Note=Heat shock factor (HSF) binding protein%2C Regulation of heat shock response and seed development;Transcript_evidence=BE040146 (Pokkali%2C indica);ORF_evidence=Inferred from literature;GO=Molecular Function: transcription corepressor activity (GO:0003714);InterPro=Heat shock factor binding 1 (IPR009643),Four-helical cytokine%2C core (IPR012351);Manual Curation=February 21%2C 2017;Literature_PMID=22996677;Oryzabase=13447;Subcellular location=cytosol (GO:0005829), nucleus (GO:0005634)
Chr09	irgsp1_rep	five_prime_UTR	12550208	12550250	.	-	.	Parent=Os09t0375100-02
Chr09	irgsp1_rep	five_prime_UTR	12547860	12547865	.	-	.	Parent=Os09t0375100-02
Chr09	irgsp1_rep	CDS	12547812	12547859	.	-	0	Parent=Os09t0375100-02
Chr09	irgsp1_rep	CDS	12547362	12547385	.	-	0	Parent=Os09t0375100-02
Chr09	irgsp1_rep	CDS	12547231	12547273	.	-	0	Parent=Os09t0375100-02
Chr09	irgsp1_rep	CDS	12545957	12546078	.	-	2	Parent=Os09t0375100-02
Chr09	irgsp1_rep	three_prime_UTR	12545719	12545956	.	-	.	Parent=Os09t0375100-02
Chr09	irgsp1_rep	mRNA	12555490	12556827	.	+	.	ID=Os09t0375300-00;Name=Os09t0375300-00;Locus_id=Os09g0375300;Oryzabase Gene Symbol Synonym(s)=OsTBL41%2C TBL41;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 41;Note=Similar to predicted protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6H5G7 (UniProt);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);Oryzabase=21496;TENOR=Os09t0375300-00;KEGG=Os09t0375300-00
Chr09	irgsp1_rep	CDS	12555490	12556827	.	+	0	Parent=Os09t0375300-00
Chr09	irgsp1_rep	mRNA	12558318	12561769	.	-	.	ID=Os09t0375400-01;Name=Os09t0375400-01;Locus_id=Os09g0375400;Note=Appr>p cyclic nucleotide phosphodiesterase domain containing protein.;Transcript_evidence=AK243218 (DDBJ%2C Best hit);ORF_evidence=NP_001063037.1 (RefSeq);NIAS_FLcDNA=J100043H15;TENOR=Os09t0375400-01;KEGG=Os09t0375400-01
Chr09	irgsp1_rep	five_prime_UTR	12561720	12561769	.	-	.	Parent=Os09t0375400-01
Chr09	irgsp1_rep	CDS	12561009	12561719	.	-	0	Parent=Os09t0375400-01
Chr09	irgsp1_rep	three_prime_UTR	12561006	12561008	.	-	.	Parent=Os09t0375400-01
Chr09	irgsp1_rep	three_prime_UTR	12558318	12558579	.	-	.	Parent=Os09t0375400-01
Chr09	irgsp1_rep	mRNA	12563625	12564050	.	-	.	ID=Os09t0375500-00;Name=Os09t0375500-00;Locus_id=Os09g0375500;Note=Hypothetical protein.;Transcript_evidence=AK367509 (DDBJ);ORF_evidence=GeneMark;TENOR=Os09t0375500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	12564049	12564050	.	-	.	Parent=Os09t0375500-00
Chr09	irgsp1_rep	CDS	12563659	12564048	.	-	0	Parent=Os09t0375500-00
Chr09	irgsp1_rep	three_prime_UTR	12563625	12563658	.	-	.	Parent=Os09t0375500-00
Chr09	irgsp1_rep	mRNA	12565503	12567065	.	-	.	ID=Os09t0375600-01;Name=Os09t0375600-01;Locus_id=Os09g0375600;CGSNL Gene Symbol=RLCK269;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 269;Oryzabase Gene Symbol Synonym(s)=OsRLCK269;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 269;Note=Similar to Protein kinase family protein.;Transcript_evidence=AK062323 (DDBJ%2C Best hit);ORF_evidence=B2D2G8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-101-D01;Oryzabase=18958;TENOR=Os09t0375600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	12567064	12567065	.	-	.	Parent=Os09t0375600-01
Chr09	irgsp1_rep	CDS	12567033	12567063	.	-	0	Parent=Os09t0375600-01
Chr09	irgsp1_rep	CDS	12566679	12566842	.	-	2	Parent=Os09t0375600-01
Chr09	irgsp1_rep	CDS	12566493	12566597	.	-	0	Parent=Os09t0375600-01
Chr09	irgsp1_rep	CDS	12565867	12566193	.	-	0	Parent=Os09t0375600-01
Chr09	irgsp1_rep	three_prime_UTR	12565503	12565866	.	-	.	Parent=Os09t0375600-01
Chr09	irgsp1_rep	mRNA	12572894	12576290	.	+	.	ID=Os09t0375700-01;Name=Os09t0375700-01;Locus_id=Os09g0375700;Note=Similar to H0616A11.2 protein.;Transcript_evidence=AK068295 (DDBJ%2C Best hit);ORF_evidence=Q01M77 (UniProt);NIAS_FLcDNA=J013150D12;TENOR=Os09t0375700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	12572894	12573573	.	+	.	Parent=Os09t0375700-01
Chr09	irgsp1_rep	five_prime_UTR	12573669	12573778	.	+	.	Parent=Os09t0375700-01
Chr09	irgsp1_rep	five_prime_UTR	12574309	12575757	.	+	.	Parent=Os09t0375700-01
Chr09	irgsp1_rep	CDS	12575758	12575976	.	+	0	Parent=Os09t0375700-01
Chr09	irgsp1_rep	three_prime_UTR	12575977	12576290	.	+	.	Parent=Os09t0375700-01
Chr09	irgsp1_rep	mRNA	12580283	12582418	.	+	.	ID=Os09t0375900-01;Name=Os09t0375900-01;Locus_id=Os09g0375900;Oryzabase Gene Symbol Synonym(s)=ATL3I%2C OsHIGD1%2C HIGD1;Oryzabase Gene Name Synonym(s)=Hypoxia-Induced Gene Domain 1%2C Hypoxia-Induced Gene Domain Protein 1;Note=Hypoxia induced protein conserved region family protein.;Transcript_evidence=AK121433 (DDBJ%2C Best hit),AK059407 (DDBJ%2C Best hit);ORF_evidence=NP_001147404.1 (RefSeq);InterPro=Hypoxia induced protein%2C domain (IPR007667);NIAS_FLcDNA=J023138J18,001-027-C03;Oryzabase=19685;TENOR=Os09t0375900-01
Chr09	irgsp1_rep	five_prime_UTR	12580283	12580322	.	+	.	Parent=Os09t0375900-01
Chr09	irgsp1_rep	CDS	12580323	12580440	.	+	0	Parent=Os09t0375900-01
Chr09	irgsp1_rep	CDS	12581956	12582143	.	+	2	Parent=Os09t0375900-01
Chr09	irgsp1_rep	three_prime_UTR	12582144	12582418	.	+	.	Parent=Os09t0375900-01
Chr09	irgsp1_rep	mRNA	12585718	12590898	.	-	.	ID=Os09t0376000-01;Name=Os09t0376000-01;Locus_id=Os09g0376000;Note=Conserved hypothetical protein.;Transcript_evidence=AK119322 (DDBJ%2C Best hit);ORF_evidence=B9G3A4 (UniProt);NIAS_FLcDNA=001-131-A05;Expression=AK119322;TENOR=Os09t0376000-01;KEGG=Os09t0376000-01
Chr09	irgsp1_rep	five_prime_UTR	12590858	12590898	.	-	.	Parent=Os09t0376000-01
Chr09	irgsp1_rep	CDS	12589793	12590857	.	-	0	Parent=Os09t0376000-01
Chr09	irgsp1_rep	CDS	12589579	12589697	.	-	0	Parent=Os09t0376000-01
Chr09	irgsp1_rep	CDS	12589400	12589474	.	-	1	Parent=Os09t0376000-01
Chr09	irgsp1_rep	CDS	12589215	12589293	.	-	1	Parent=Os09t0376000-01
Chr09	irgsp1_rep	CDS	12589059	12589100	.	-	0	Parent=Os09t0376000-01
Chr09	irgsp1_rep	three_prime_UTR	12589028	12589058	.	-	.	Parent=Os09t0376000-01
Chr09	irgsp1_rep	three_prime_UTR	12588376	12588453	.	-	.	Parent=Os09t0376000-01
Chr09	irgsp1_rep	three_prime_UTR	12588093	12588293	.	-	.	Parent=Os09t0376000-01
Chr09	irgsp1_rep	three_prime_UTR	12587618	12587722	.	-	.	Parent=Os09t0376000-01
Chr09	irgsp1_rep	three_prime_UTR	12586650	12586907	.	-	.	Parent=Os09t0376000-01
Chr09	irgsp1_rep	three_prime_UTR	12586205	12586540	.	-	.	Parent=Os09t0376000-01
Chr09	irgsp1_rep	three_prime_UTR	12585718	12586088	.	-	.	Parent=Os09t0376000-01
Chr09	irgsp1_rep	mRNA	12601399	12602057	.	+	.	ID=Os09t0376300-01;Name=Os09t0376300-01;Locus_id=Os09g0376300;Note=Conserved hypothetical protein.;Transcript_evidence=AK109279 (DDBJ%2C Best hit);ORF_evidence=B8BEZ9 (UniProt);NIAS_FLcDNA=002-188-B03;Expression=AK109279;TENOR=Os09t0376300-01;KEGG=Os09t0376300-01
Chr09	irgsp1_rep	five_prime_UTR	12601399	12601445	.	+	.	Parent=Os09t0376300-01
Chr09	irgsp1_rep	CDS	12601446	12601952	.	+	0	Parent=Os09t0376300-01
Chr09	irgsp1_rep	three_prime_UTR	12601953	12602057	.	+	.	Parent=Os09t0376300-01
Chr09	irgsp1_rep	mRNA	12603405	12603599	.	+	.	ID=Os09t0376350-00;Name=Os09t0376350-00;Locus_id=Os09g0376350;Note=Non-protein coding transcript.;Transcript_evidence=CT835882 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os09t0376350-00
Chr09	irgsp1_rep	exon	12603405	12603599	.	+	.	Parent=Os09t0376350-00
Chr09	irgsp1_rep	mRNA	12606916	12607552	.	-	.	ID=Os09t0376400-00;Name=Os09t0376400-00;Locus_id=Os09g0376400;Note=Hypothetical conserved gene.;Transcript_evidence=CT835835 (DDBJ%2C Best hit);ORF_evidence=GeneMark;InterPro=Helix-loop-helix DNA-binding (IPR011598);TENOR=Os09t0376400-00;KEGG=Os09t0376400-00
Chr09	irgsp1_rep	five_prime_UTR	12607446	12607552	.	-	.	Parent=Os09t0376400-00
Chr09	irgsp1_rep	CDS	12607167	12607445	.	-	0	Parent=Os09t0376400-00
Chr09	irgsp1_rep	three_prime_UTR	12606916	12607166	.	-	.	Parent=Os09t0376400-00
Chr09	irgsp1_rep	mRNA	12627180	12629654	.	+	.	ID=Os09t0376600-00;Name=Os09t0376600-00;Locus_id=Os09g0376600;Note=Tyrosine protein kinase domain containing protein.;Transcript_evidence=AK363787 (DDBJ);ORF_evidence=NP_001063043.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os09t0376600-00;KEGG=Os09t0376600-00
Chr09	irgsp1_rep	CDS	12627180	12628608	.	+	0	Parent=Os09t0376600-00
Chr09	irgsp1_rep	CDS	12629020	12629654	.	+	2	Parent=Os09t0376600-00
Chr09	irgsp1_rep	mRNA	12629015	12629694	.	-	.	ID=Os09t0376650-00;Name=Os09t0376650-00;Locus_id=Os09g0376650;Note=Hypothetical protein.;Transcript_evidence=EU971977 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0376650-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	12629658	12629694	.	-	.	Parent=Os09t0376650-00
Chr09	irgsp1_rep	CDS	12629166	12629657	.	-	0	Parent=Os09t0376650-00
Chr09	irgsp1_rep	three_prime_UTR	12629015	12629165	.	-	.	Parent=Os09t0376650-00
Chr09	irgsp1_rep	mRNA	12637799	12639123	.	+	.	ID=Os09t0376700-01;Name=Os09t0376700-01;Locus_id=Os09g0376700;RAP-DB Gene Symbol Synonym(s)=RRF1;RAP-DB Gene Name Synonym(s)=RING FINGER 1%2C ATL family proteins.;Note=ATL family protein containing RING-H2 finger motif;Transcript_evidence=AB045121;ORF_evidence=Q9LRB6;GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841);Manual Curation=March 10%2C 2016;Literature_PMID=11448732;TENOR=Os09t0376700-00
Chr09	irgsp1_rep	five_prime_UTR	12637799	12637892	.	+	.	Parent=Os09t0376700-01
Chr09	irgsp1_rep	CDS	12637893	12639071	.	+	0	Parent=Os09t0376700-01
Chr09	irgsp1_rep	three_prime_UTR	12639072	12639123	.	+	.	Parent=Os09t0376700-01
Chr09	irgsp1_rep	mRNA	12646004	12650074	.	-	.	ID=Os09t0376800-01;Name=Os09t0376800-01;Locus_id=Os09g0376800;Note=Similar to Trehalose-6-phosphate synthase (Fragment).;Transcript_evidence=AK067023 (DDBJ%2C Best hit);ORF_evidence=B6SH67 (UniProt);GO=Biological Process: trehalose biosynthetic process (GO:0005992),Molecular Function: catalytic activity (GO:0003824);InterPro=Glycosyl transferase%2C family 20 (IPR001830);NIAS_FLcDNA=J013092M02;Expression=AK067023;TENOR=Os09t0376800-01;KEGG=Os09t0376800-01
Chr09	irgsp1_rep	five_prime_UTR	12649802	12650074	.	-	.	Parent=Os09t0376800-01
Chr09	irgsp1_rep	five_prime_UTR	12647552	12647562	.	-	.	Parent=Os09t0376800-01
Chr09	irgsp1_rep	CDS	12646004	12647551	.	-	0	Parent=Os09t0376800-01
Chr09	irgsp1_rep	mRNA	12662824	12667523	.	-	.	ID=Os09t0376900-01;Name=Os09t0376900-01;Locus_id=Os09g0376900;CGSNL Gene Symbol=HAK23;CGSNL Gene Name=HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 23;Oryzabase Gene Symbol Synonym(s)=OsHAK23;Oryzabase Gene Name Synonym(s)=High-affinity Potassium(K+) Transporter 23%2C Potassium transporter 23;Note=Similar to Potassium transporter 13 (AtPOT13) (AtKT5).;Transcript_evidence=AK070831 (DDBJ%2C Best hit);ORF_evidence=Q6H4R6 (UniProt);GO=Biological Process: potassium ion transmembrane transport (GO:0071805),Cellular Component: membrane (GO:0016020),Molecular Function: potassium ion transmembrane transporter activity (GO:0015079);InterPro=K+ potassium transporter (IPR003855);NIAS_FLcDNA=J023063B21;Oryzabase=8677;Expression=AK070831;TENOR=Os09t0376900-01;KEGG=Os09t0376900-01
Chr09	irgsp1_rep	five_prime_UTR	12667418	12667523	.	-	.	Parent=Os09t0376900-01
Chr09	irgsp1_rep	CDS	12667043	12667417	.	-	0	Parent=Os09t0376900-01
Chr09	irgsp1_rep	CDS	12666530	12666758	.	-	0	Parent=Os09t0376900-01
Chr09	irgsp1_rep	CDS	12666163	12666411	.	-	2	Parent=Os09t0376900-01
Chr09	irgsp1_rep	CDS	12666003	12666053	.	-	2	Parent=Os09t0376900-01
Chr09	irgsp1_rep	CDS	12665605	12665865	.	-	2	Parent=Os09t0376900-01
Chr09	irgsp1_rep	CDS	12665127	12665179	.	-	2	Parent=Os09t0376900-01
Chr09	irgsp1_rep	CDS	12664890	12665004	.	-	0	Parent=Os09t0376900-01
Chr09	irgsp1_rep	CDS	12664537	12664791	.	-	2	Parent=Os09t0376900-01
Chr09	irgsp1_rep	CDS	12663168	12664213	.	-	2	Parent=Os09t0376900-01
Chr09	irgsp1_rep	three_prime_UTR	12662824	12663167	.	-	.	Parent=Os09t0376900-01
Chr09	irgsp1_rep	mRNA	12662856	12667520	.	-	.	ID=Os09t0376900-02;Name=Os09t0376900-02;Locus_id=Os09g0376900;CGSNL Gene Symbol=HAK23;CGSNL Gene Name=HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 23;Oryzabase Gene Symbol Synonym(s)=OsHAK23;Oryzabase Gene Name Synonym(s)=High-affinity Potassium(K+) Transporter 23%2C Potassium transporter 23;Note=Similar to Potassium transporter 23.;Transcript_evidence=AK099766 (DDBJ%2C Best hit);ORF_evidence=Q6H4R6 (UniProt);GO=Biological Process: potassium ion transmembrane transport (GO:0071805),Cellular Component: membrane (GO:0016020),Molecular Function: potassium ion transmembrane transporter activity (GO:0015079);InterPro=K+ potassium transporter (IPR003855);NIAS_FLcDNA=J013095A12;Oryzabase=8677;Expression=AK099766;TENOR=Os09t0376900-02;KEGG=Os09t0376900-02
Chr09	irgsp1_rep	five_prime_UTR	12667418	12667520	.	-	.	Parent=Os09t0376900-02
Chr09	irgsp1_rep	CDS	12667043	12667417	.	-	0	Parent=Os09t0376900-02
Chr09	irgsp1_rep	CDS	12666480	12666758	.	-	0	Parent=Os09t0376900-02
Chr09	irgsp1_rep	three_prime_UTR	12666163	12666479	.	-	.	Parent=Os09t0376900-02
Chr09	irgsp1_rep	three_prime_UTR	12665127	12666053	.	-	.	Parent=Os09t0376900-02
Chr09	irgsp1_rep	three_prime_UTR	12664890	12665004	.	-	.	Parent=Os09t0376900-02
Chr09	irgsp1_rep	three_prime_UTR	12662856	12664791	.	-	.	Parent=Os09t0376900-02
Chr09	irgsp1_rep	mRNA	12729598	12730467	.	-	.	ID=Os09t0378200-00;Name=Os09t0378200-00;Locus_id=Os09g0378200;Note=Conserved hypothetical protein.;Transcript_evidence=EF672270 (DDBJ);ORF_evidence=XP_001774308.1 (RefSeq);TENOR=Os09t0378200-00
Chr09	irgsp1_rep	CDS	12730337	12730467	.	-	0	Parent=Os09t0378200-00
Chr09	irgsp1_rep	CDS	12730223	12730226	.	-	1	Parent=Os09t0378200-00
Chr09	irgsp1_rep	three_prime_UTR	12730063	12730222	.	-	.	Parent=Os09t0378200-00
Chr09	irgsp1_rep	three_prime_UTR	12729598	12729684	.	-	.	Parent=Os09t0378200-00
Chr09	irgsp1_rep	mRNA	12730781	12735642	.	-	.	ID=Os09t0378300-01;Name=Os09t0378300-01;Locus_id=Os09g0378300;Note=Similar to Leucyl-tRNA synthetase%2C cytoplasmic (EC 6.1.1.4) (Leucine--tRNA ligase) (LeuRS).;Transcript_evidence=AK068860 (DDBJ%2C Best hit);ORF_evidence=XP_002892512.1 (RefSeq);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: leucyl-tRNA aminoacylation (GO:0006429),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: leucine-tRNA ligase activity (GO:0004823),Molecular Function: ATP binding (GO:0005524);InterPro=Aminoacyl-tRNA synthetase%2C class I%2C conserved site (IPR001412),Aminoacyl-tRNA synthetase%2C class Ia (IPR002300),Leucyl-tRNA synthetase%2C class Ia%2C archaeal/eukaryotic cytosolic (IPR004493),Valyl/Leucyl/Isoleucyl-tRNA synthetase%2C class Ia%2C editing domain (IPR009008),Aminoacyl-tRNA synthetase%2C class 1a%2C anticodon-binding (IPR009080),Valyl/Leucyl/Isoleucyl-tRNA synthetase%2C class I%2C anticodon-binding (IPR013155),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J013169D12;Expression=AK068860;TENOR=Os09t0378300-01;KEGG=Os09t0378300-01 (EC:6.1.1.4)
Chr09	irgsp1_rep	five_prime_UTR	12735515	12735642	.	-	.	Parent=Os09t0378300-01
Chr09	irgsp1_rep	five_prime_UTR	12734418	12734421	.	-	.	Parent=Os09t0378300-01
Chr09	irgsp1_rep	CDS	12731133	12734417	.	-	0	Parent=Os09t0378300-01
Chr09	irgsp1_rep	three_prime_UTR	12730781	12731132	.	-	.	Parent=Os09t0378300-01
Chr09	irgsp1_rep	mRNA	12746529	12748883	.	+	.	ID=Os09t0378700-00;Name=Os09t0378700-00;Locus_id=Os09g0378700;Oryzabase Gene Symbol Synonym(s)=OsPUB6;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 6%2C U-box protein 6;Note=Similar to ubiquitin-protein ligase.;Transcript_evidence=AK364294 (DDBJ);ORF_evidence=NP_001147953.1 (RefSeq);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),U box domain (IPR003613),Armadillo-like helical (IPR011989),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Armadillo-type fold (IPR016024);Oryzabase=17799;TENOR=Os09t0378700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	12746529	12746594	.	+	.	Parent=Os09t0378700-00
Chr09	irgsp1_rep	CDS	12746595	12748733	.	+	0	Parent=Os09t0378700-00
Chr09	irgsp1_rep	three_prime_UTR	12748734	12748883	.	+	.	Parent=Os09t0378700-00
Chr09	irgsp1_rep	mRNA	12777391	12778214	.	-	.	ID=Os09t0379400-00;Name=Os09t0379400-00;Locus_id=Os09g0379400;Note=Similar to OSIGBa0096F13.5 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01M05 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os09t0379400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	12777685	12778214	.	-	0	Parent=Os09t0379400-00
Chr09	irgsp1_rep	CDS	12777391	12777616	.	-	1	Parent=Os09t0379400-00
Chr09	irgsp1_rep	mRNA	12779414	12780662	.	+	.	ID=Os09t0379500-01;Name=Os09t0379500-01;Locus_id=Os09g0379500;Note=Hypothetical protein.;Transcript_evidence=AK069390 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023010P22;Expression=AK069390;TENOR=Os09t0379500-01;KEGG=Os09t0379500-01
Chr09	irgsp1_rep	five_prime_UTR	12779414	12779961	.	+	.	Parent=Os09t0379500-01
Chr09	irgsp1_rep	CDS	12779962	12780213	.	+	0	Parent=Os09t0379500-01
Chr09	irgsp1_rep	three_prime_UTR	12780214	12780662	.	+	.	Parent=Os09t0379500-01
Chr09	irgsp1_rep	mRNA	12782374	12783648	.	-	.	ID=Os09t0379600-00;Name=Os09t0379600-00;Locus_id=Os09g0379600;CGSNL Gene Symbol=HOX25;CGSNL Gene Name=HOMEOBOX GENE 25;Oryzabase Gene Symbol Synonym(s)=Oshox25%2C OsHox25;Oryzabase Gene Name Synonym(s)=rice homeobox gene 25%2C Homeobox-leucine zipper protein HOX25%2C Homeodomain transcription factor HOX25%2C HD-ZIP protein HOX25;Note=Similar to Homeobox-leucine zipper protein HOX25.;Transcript_evidence=CT837895 (DDBJ%2C Best hit);ORF_evidence=A3BYC1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: transcription regulatory region sequence-specific DNA binding (GO:0000976),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Helix-turn-helix motif%2C lambda-like repressor (IPR000047),Homeobox (IPR001356),Leucine zipper%2C homeobox-associated (IPR003106),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Homeobox%2C conserved site (IPR017970);Oryzabase=8462;TENOR=Os09t0379600-00;KEGG=Os09t0379600-00
Chr09	irgsp1_rep	five_prime_UTR	12783081	12783648	.	-	.	Parent=Os09t0379600-00
Chr09	irgsp1_rep	CDS	12782448	12783080	.	-	0	Parent=Os09t0379600-00
Chr09	irgsp1_rep	three_prime_UTR	12782374	12782447	.	-	.	Parent=Os09t0379600-00
Chr09	irgsp1_rep	mRNA	12802546	12805244	.	-	.	ID=Os09t0379900-02;Name=Os09t0379900-02;Locus_id=Os09g0379900;Note=Similar to Beta-glucan binding protein.;Transcript_evidence=AK100032 (DDBJ%2C Best hit),AK100548 (DDBJ%2C Best hit),AK105910 (DDBJ%2C Best hit);ORF_evidence=A0EJF3 (UniProt);NIAS_FLcDNA=J013148H21,J023103B19,001-204-G09;Expression=AK100032;TENOR=Os09t0379900-02;KEGG=Os09t0379900-02
Chr09	irgsp1_rep	five_prime_UTR	12805118	12805244	.	-	.	Parent=Os09t0379900-02
Chr09	irgsp1_rep	CDS	12803039	12805117	.	-	0	Parent=Os09t0379900-02
Chr09	irgsp1_rep	three_prime_UTR	12802546	12803038	.	-	.	Parent=Os09t0379900-02
Chr09	irgsp1_rep	mRNA	12817225	12820659	.	+	.	ID=Os09t0380000-01;Name=Os09t0380000-01;Locus_id=Os09g0380000;Note=Similar to catalytic/ ligase.;Transcript_evidence=AK068230 (DDBJ%2C Best hit);ORF_evidence=NP_001152332.1 (RefSeq);NIAS_FLcDNA=J013147J22;TENOR=Os09t0380000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	12817225	12817461	.	+	0	Parent=Os09t0380000-01
Chr09	irgsp1_rep	CDS	12817714	12817818	.	+	0	Parent=Os09t0380000-01
Chr09	irgsp1_rep	CDS	12817931	12818002	.	+	0	Parent=Os09t0380000-01
Chr09	irgsp1_rep	three_prime_UTR	12818003	12818186	.	+	.	Parent=Os09t0380000-01
Chr09	irgsp1_rep	three_prime_UTR	12818297	12818501	.	+	.	Parent=Os09t0380000-01
Chr09	irgsp1_rep	three_prime_UTR	12818629	12818669	.	+	.	Parent=Os09t0380000-01
Chr09	irgsp1_rep	three_prime_UTR	12818757	12818882	.	+	.	Parent=Os09t0380000-01
Chr09	irgsp1_rep	three_prime_UTR	12819180	12819253	.	+	.	Parent=Os09t0380000-01
Chr09	irgsp1_rep	three_prime_UTR	12819422	12820096	.	+	.	Parent=Os09t0380000-01
Chr09	irgsp1_rep	three_prime_UTR	12820214	12820430	.	+	.	Parent=Os09t0380000-01
Chr09	irgsp1_rep	three_prime_UTR	12820532	12820659	.	+	.	Parent=Os09t0380000-01
Chr09	irgsp1_rep	mRNA	12818187	12820659	.	+	.	ID=Os09t0380000-02;Name=Os09t0380000-02;Locus_id=Os09g0380000;Note=Similar to catalytic/ ligase.;Transcript_evidence=AK069375 (DDBJ%2C Best hit);ORF_evidence=NP_001152332.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873);NIAS_FLcDNA=J023010B13;Expression=AK069375;TENOR=Os09t0380000-02;KEGG=Os09t0380000-02
Chr09	irgsp1_rep	five_prime_UTR	12818187	12818189	.	+	.	Parent=Os09t0380000-02
Chr09	irgsp1_rep	CDS	12818190	12818501	.	+	0	Parent=Os09t0380000-02
Chr09	irgsp1_rep	CDS	12818629	12818669	.	+	0	Parent=Os09t0380000-02
Chr09	irgsp1_rep	CDS	12818757	12818886	.	+	1	Parent=Os09t0380000-02
Chr09	irgsp1_rep	three_prime_UTR	12818887	12819253	.	+	.	Parent=Os09t0380000-02
Chr09	irgsp1_rep	three_prime_UTR	12819422	12819642	.	+	.	Parent=Os09t0380000-02
Chr09	irgsp1_rep	three_prime_UTR	12820002	12820096	.	+	.	Parent=Os09t0380000-02
Chr09	irgsp1_rep	three_prime_UTR	12820214	12820430	.	+	.	Parent=Os09t0380000-02
Chr09	irgsp1_rep	three_prime_UTR	12820532	12820659	.	+	.	Parent=Os09t0380000-02
Chr09	irgsp1_rep	mRNA	12821072	12821612	.	+	.	ID=Os09t0380050-00;Name=Os09t0380050-00;Locus_id=Os09g0380050;Note=Similar to catalytic/ ligase.;Transcript_evidence=CT835818 (DDBJ%2C Best hit);ORF_evidence=NP_001152332.1 (RefSeq);TENOR=Os09t0380050-00;KEGG=Os09t0380050-00
Chr09	irgsp1_rep	CDS	12821072	12821131	.	+	0	Parent=Os09t0380050-00
Chr09	irgsp1_rep	CDS	12821247	12821357	.	+	0	Parent=Os09t0380050-00
Chr09	irgsp1_rep	three_prime_UTR	12821358	12821612	.	+	.	Parent=Os09t0380050-00
Chr09	irgsp1_rep	mRNA	12825613	12828249	.	+	.	ID=Os09t0380200-01;Name=Os09t0380200-01;Locus_id=Os09g0380200;RAP-DB Gene Symbol Synonym(s)=OsV<sub>5A</sub>%2C YLC1;RAP-DB Gene Name Synonym(s)=VIRESCENT 5A%2C Young Leaf Chlorosis 1;CGSNL Gene Symbol=YLC1;CGSNL Gene Name=YOUNG LEAF CHLOROSIS 1;Oryzabase Gene Symbol Synonym(s)=OsV5A%2C V5A;Oryzabase Gene Name Synonym(s)=Young Leaf Chlorosis 1%2C VIRESCENT 5A;Note=Chaperone-like protein of protochlorophyllide oxidoreductase (POR)%2C J-like protein%2C Chloroplast-localized protein containing DUF3353%2C Regulation of chlorophyll biosynthesis%2C Chlorophyll and lutein accumulation%2C Chloroplast development;Transcript_evidence=XM_015755285;ORF_evidence=A3BYC5;InterPro=Protein CHAPERONE-LIKE PROTEIN OF POR1-like (IPR021788);Manual Curation=November 10%2C 2016;Literature_PMID=27565208,23053539;Oryzabase=18436;TENOR=Os09t0380200-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	12825613	12825718	.	+	.	Parent=Os09t0380200-01
Chr09	irgsp1_rep	CDS	12825719	12825774	.	+	0	Parent=Os09t0380200-01
Chr09	irgsp1_rep	CDS	12825923	12826065	.	+	1	Parent=Os09t0380200-01
Chr09	irgsp1_rep	CDS	12826965	12827347	.	+	2	Parent=Os09t0380200-01
Chr09	irgsp1_rep	CDS	12827646	12827722	.	+	0	Parent=Os09t0380200-01
Chr09	irgsp1_rep	CDS	12827812	12827962	.	+	1	Parent=Os09t0380200-01
Chr09	irgsp1_rep	three_prime_UTR	12827963	12828249	.	+	.	Parent=Os09t0380200-01
Chr09	irgsp1_rep	mRNA	12831387	12832921	.	+	.	ID=Os09t0380300-01;Name=Os09t0380300-01;Locus_id=Os09g0380300;Note=Hypothetical conserved gene.;Transcript_evidence=AK289199 (DDBJ%2C Best hit);ORF_evidence=NP_001063054.2 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: monooxygenase activity (GO:0004497),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group IV (IPR002403),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J100048G05;TENOR=Os09t0380300-01;KEGG=Os09t0380300-01
Chr09	irgsp1_rep	five_prime_UTR	12831387	12831389	.	+	.	Parent=Os09t0380300-01
Chr09	irgsp1_rep	CDS	12831390	12831641	.	+	0	Parent=Os09t0380300-01
Chr09	irgsp1_rep	CDS	12832336	12832878	.	+	0	Parent=Os09t0380300-01
Chr09	irgsp1_rep	three_prime_UTR	12832879	12832921	.	+	.	Parent=Os09t0380300-01
Chr09	irgsp1_rep	mRNA	12833971	12834961	.	+	.	ID=Os09t0380400-01;Name=Os09t0380400-01;Locus_id=Os09g0380400;Note=Conserved hypothetical protein.;Transcript_evidence=AK073073 (DDBJ%2C Best hit),AK063909 (DDBJ%2C Best hit);ORF_evidence=B8BF06 (UniProt);NIAS_FLcDNA=J033007M03,001-123-A03;TENOR=Os09t0380400-01
Chr09	irgsp1_rep	five_prime_UTR	12833971	12834248	.	+	.	Parent=Os09t0380400-01
Chr09	irgsp1_rep	CDS	12834249	12834278	.	+	0	Parent=Os09t0380400-01
Chr09	irgsp1_rep	CDS	12834354	12834503	.	+	0	Parent=Os09t0380400-01
Chr09	irgsp1_rep	three_prime_UTR	12834504	12834961	.	+	.	Parent=Os09t0380400-01
Chr09	irgsp1_rep	mRNA	12835752	12837275	.	+	.	ID=Os09t0380450-01;Name=Os09t0380450-01;Locus_id=Os09g0380450;Note=Conserved hypothetical protein.;Transcript_evidence=AK064477 (DDBJ%2C Best hit);ORF_evidence=NP_001175812.1 (RefSeq);NIAS_FLcDNA=002-111-A02;TENOR=Os09t0380450-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	12835752	12836664	.	+	.	Parent=Os09t0380450-01
Chr09	irgsp1_rep	CDS	12836665	12836793	.	+	0	Parent=Os09t0380450-01
Chr09	irgsp1_rep	three_prime_UTR	12836794	12837275	.	+	.	Parent=Os09t0380450-01
Chr09	irgsp1_rep	mRNA	12837886	12838615	.	-	.	ID=Os09t0380501-00;Name=Os09t0380501-00;Locus_id=Os09g0380501;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A3BYC8 (UniProt);TENOR=Os09t0380501-00;KEGG=Os09t0380501-00
Chr09	irgsp1_rep	CDS	12838411	12838615	.	-	0	Parent=Os09t0380501-00
Chr09	irgsp1_rep	CDS	12838109	12838213	.	-	2	Parent=Os09t0380501-00
Chr09	irgsp1_rep	CDS	12837886	12837947	.	-	2	Parent=Os09t0380501-00
Chr09	irgsp1_rep	mRNA	12847732	12848959	.	-	.	ID=Os09t0380600-01;Name=Os09t0380600-01;Locus_id=Os09g0380600;Note=Protein of unknown function DUF295 domain containing protein.;Transcript_evidence=AK063655 (DDBJ%2C Best hit);ORF_evidence=A2Z0Q9 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174);NIAS_FLcDNA=001-119-B08;Expression=AK063655;TENOR=Os09t0380600-01;KEGG=Os09t0380600-01
Chr09	irgsp1_rep	five_prime_UTR	12848862	12848959	.	-	.	Parent=Os09t0380600-01
Chr09	irgsp1_rep	CDS	12847833	12848861	.	-	0	Parent=Os09t0380600-01
Chr09	irgsp1_rep	three_prime_UTR	12847732	12847832	.	-	.	Parent=Os09t0380600-01
Chr09	irgsp1_rep	mRNA	12863900	12864496	.	+	.	ID=Os09t0380966-00;Name=Os09t0380966-00;Locus_id=Os09g0380966;Note=Hypothetical protein.;Transcript_evidence=BT033667 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0380966-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	12863900	12863901	.	+	.	Parent=Os09t0380966-00
Chr09	irgsp1_rep	CDS	12863902	12864243	.	+	0	Parent=Os09t0380966-00
Chr09	irgsp1_rep	three_prime_UTR	12864244	12864496	.	+	.	Parent=Os09t0380966-00
Chr09	irgsp1_rep	mRNA	12884071	12888524	.	+	.	ID=Os09t0381100-01;Name=Os09t0381100-01;Locus_id=Os09g0381100;Note=Xanthine/uracil/vitamin C permease family protein.;Transcript_evidence=AK121778 (DDBJ%2C Best hit);ORF_evidence=B6TEJ2 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Xanthine/uracil/vitamin C permease (IPR006043);NIAS_FLcDNA=J033093F12;Expression=AK121778;TENOR=Os09t0381100-01;KEGG=Os09t0381100-01
Chr09	irgsp1_rep	five_prime_UTR	12884071	12884870	.	+	.	Parent=Os09t0381100-01
Chr09	irgsp1_rep	CDS	12884871	12884973	.	+	0	Parent=Os09t0381100-01
Chr09	irgsp1_rep	CDS	12885512	12885609	.	+	2	Parent=Os09t0381100-01
Chr09	irgsp1_rep	CDS	12885770	12885946	.	+	0	Parent=Os09t0381100-01
Chr09	irgsp1_rep	CDS	12886058	12886158	.	+	0	Parent=Os09t0381100-01
Chr09	irgsp1_rep	CDS	12886254	12886329	.	+	1	Parent=Os09t0381100-01
Chr09	irgsp1_rep	CDS	12886416	12886475	.	+	0	Parent=Os09t0381100-01
Chr09	irgsp1_rep	CDS	12886561	12886745	.	+	0	Parent=Os09t0381100-01
Chr09	irgsp1_rep	CDS	12886829	12886925	.	+	1	Parent=Os09t0381100-01
Chr09	irgsp1_rep	CDS	12887030	12887116	.	+	0	Parent=Os09t0381100-01
Chr09	irgsp1_rep	CDS	12887204	12887262	.	+	0	Parent=Os09t0381100-01
Chr09	irgsp1_rep	CDS	12887368	12887459	.	+	1	Parent=Os09t0381100-01
Chr09	irgsp1_rep	CDS	12887572	12887649	.	+	2	Parent=Os09t0381100-01
Chr09	irgsp1_rep	CDS	12887751	12887911	.	+	2	Parent=Os09t0381100-01
Chr09	irgsp1_rep	CDS	12888018	12888236	.	+	0	Parent=Os09t0381100-01
Chr09	irgsp1_rep	three_prime_UTR	12888237	12888524	.	+	.	Parent=Os09t0381100-01
Chr09	irgsp1_rep	mRNA	12884348	12888510	.	+	.	ID=Os09t0381100-02;Name=Os09t0381100-02;Locus_id=Os09g0381100;Note=Xanthine/uracil/vitamin C permease family protein.;Transcript_evidence=AK064905 (DDBJ%2C Best hit);ORF_evidence=B6TEJ2 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Xanthine/uracil/vitamin C permease (IPR006043);NIAS_FLcDNA=J013000L20;Expression=AK064905;TENOR=Os09t0381100-02;KEGG=Os09t0381100-02
Chr09	irgsp1_rep	five_prime_UTR	12884348	12884870	.	+	.	Parent=Os09t0381100-02
Chr09	irgsp1_rep	CDS	12884871	12884973	.	+	0	Parent=Os09t0381100-02
Chr09	irgsp1_rep	CDS	12885512	12885609	.	+	2	Parent=Os09t0381100-02
Chr09	irgsp1_rep	CDS	12885770	12885946	.	+	0	Parent=Os09t0381100-02
Chr09	irgsp1_rep	CDS	12886058	12886158	.	+	0	Parent=Os09t0381100-02
Chr09	irgsp1_rep	CDS	12886254	12886329	.	+	1	Parent=Os09t0381100-02
Chr09	irgsp1_rep	CDS	12886416	12886475	.	+	0	Parent=Os09t0381100-02
Chr09	irgsp1_rep	CDS	12886561	12886745	.	+	0	Parent=Os09t0381100-02
Chr09	irgsp1_rep	CDS	12886829	12886925	.	+	1	Parent=Os09t0381100-02
Chr09	irgsp1_rep	CDS	12887030	12887116	.	+	0	Parent=Os09t0381100-02
Chr09	irgsp1_rep	CDS	12887204	12887262	.	+	0	Parent=Os09t0381100-02
Chr09	irgsp1_rep	CDS	12887368	12887459	.	+	1	Parent=Os09t0381100-02
Chr09	irgsp1_rep	CDS	12887572	12887649	.	+	2	Parent=Os09t0381100-02
Chr09	irgsp1_rep	CDS	12887751	12887911	.	+	2	Parent=Os09t0381100-02
Chr09	irgsp1_rep	CDS	12888018	12888236	.	+	0	Parent=Os09t0381100-02
Chr09	irgsp1_rep	three_prime_UTR	12888237	12888510	.	+	.	Parent=Os09t0381100-02
Chr09	irgsp1_rep	mRNA	12886839	12888446	.	+	.	ID=Os09t0381100-03;Name=Os09t0381100-03;Locus_id=Os09g0381100;Note=Similar to Permease I.;Transcript_evidence=AK061792 (DDBJ%2C Best hit);ORF_evidence=B6TEJ2 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Xanthine/uracil/vitamin C permease (IPR006043);NIAS_FLcDNA=001-039-F05;Expression=AK061792;TENOR=Os09t0381100-03;KEGG=Os09t0381100-03
Chr09	irgsp1_rep	CDS	12886839	12886925	.	+	0	Parent=Os09t0381100-03
Chr09	irgsp1_rep	CDS	12887030	12887116	.	+	0	Parent=Os09t0381100-03
Chr09	irgsp1_rep	CDS	12887204	12887262	.	+	0	Parent=Os09t0381100-03
Chr09	irgsp1_rep	CDS	12887368	12887459	.	+	1	Parent=Os09t0381100-03
Chr09	irgsp1_rep	CDS	12887572	12887649	.	+	2	Parent=Os09t0381100-03
Chr09	irgsp1_rep	CDS	12887751	12887911	.	+	2	Parent=Os09t0381100-03
Chr09	irgsp1_rep	CDS	12888018	12888236	.	+	0	Parent=Os09t0381100-03
Chr09	irgsp1_rep	three_prime_UTR	12888237	12888446	.	+	.	Parent=Os09t0381100-03
Chr09	irgsp1_rep	mRNA	12892973	12898006	.	+	.	ID=Os09t0381300-01;Name=Os09t0381300-01;Locus_id=Os09g0381300;Note=Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 domain containing protein.;Transcript_evidence=AK102626 (DDBJ%2C Best hit);ORF_evidence=B9G3B9 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421);NIAS_FLcDNA=J033099J19;TENOR=Os09t0381300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	12892973	12893030	.	+	.	Parent=Os09t0381300-01
Chr09	irgsp1_rep	five_prime_UTR	12893130	12893856	.	+	.	Parent=Os09t0381300-01
Chr09	irgsp1_rep	CDS	12893857	12893918	.	+	0	Parent=Os09t0381300-01
Chr09	irgsp1_rep	CDS	12894401	12894454	.	+	1	Parent=Os09t0381300-01
Chr09	irgsp1_rep	CDS	12894724	12894860	.	+	1	Parent=Os09t0381300-01
Chr09	irgsp1_rep	CDS	12894971	12894996	.	+	2	Parent=Os09t0381300-01
Chr09	irgsp1_rep	three_prime_UTR	12894997	12895123	.	+	.	Parent=Os09t0381300-01
Chr09	irgsp1_rep	three_prime_UTR	12895453	12895590	.	+	.	Parent=Os09t0381300-01
Chr09	irgsp1_rep	three_prime_UTR	12896573	12896637	.	+	.	Parent=Os09t0381300-01
Chr09	irgsp1_rep	three_prime_UTR	12896718	12897088	.	+	.	Parent=Os09t0381300-01
Chr09	irgsp1_rep	three_prime_UTR	12897332	12897493	.	+	.	Parent=Os09t0381300-01
Chr09	irgsp1_rep	three_prime_UTR	12897566	12898006	.	+	.	Parent=Os09t0381300-01
Chr09	irgsp1_rep	mRNA	12897572	12899549	.	-	.	ID=Os09t0381400-01;Name=Os09t0381400-01;Locus_id=Os09g0381400;Note=Similar to Ervatamin C (EC 3.4.22.-) (ERV-C).;Transcript_evidence=AK070060 (DDBJ%2C Best hit),AK071091 (DDBJ%2C Best hit);ORF_evidence=B9G3C0 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase%2C cysteine peptidase active site (IPR000169),Peptidase C1A%2C papain C-terminal (IPR000668),Peptidase C1A%2C papain (IPR013128),Proteinase inhibitor I29%2C cathepsin propeptide (IPR013201);NIAS_FLcDNA=J023041D01,J023079N05;Expression=AK070060;TENOR=Os09t0381400-01;KEGG=Os09t0381400-01
Chr09	irgsp1_rep	five_prime_UTR	12899487	12899549	.	-	.	Parent=Os09t0381400-01
Chr09	irgsp1_rep	CDS	12898988	12899486	.	-	0	Parent=Os09t0381400-01
Chr09	irgsp1_rep	CDS	12898300	12898889	.	-	2	Parent=Os09t0381400-01
Chr09	irgsp1_rep	three_prime_UTR	12897572	12898299	.	-	.	Parent=Os09t0381400-01
Chr09	irgsp1_rep	mRNA	12899148	12899542	.	-	.	ID=Os09t0381400-02;Name=Os09t0381400-02;Locus_id=Os09g0381400;Note=Similar to cysteine protease.;Transcript_evidence=AK121482 (DDBJ%2C Best hit);ORF_evidence=NP_001146834.1 (RefSeq);GO=Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase C1A%2C papain (IPR013128),Proteinase inhibitor I29%2C cathepsin propeptide (IPR013201);NIAS_FLcDNA=J023149L10;Expression=AK121482;TENOR=Os09t0381400-02;KEGG=Os09t0381400-02
Chr09	irgsp1_rep	five_prime_UTR	12899487	12899542	.	-	.	Parent=Os09t0381400-02
Chr09	irgsp1_rep	CDS	12899148	12899486	.	-	0	Parent=Os09t0381400-02
Chr09	irgsp1_rep	mRNA	12913683	12914824	.	+	.	ID=Os09t0381600-01;Name=Os09t0381600-01;Locus_id=Os09g0381600;Note=Conserved hypothetical protein.;Transcript_evidence=AK107716 (DDBJ%2C Best hit);ORF_evidence=B8BF14 (UniProt);NIAS_FLcDNA=002-132-E04;Expression=AK107716;TENOR=Os09t0381600-01;KEGG=Os09t0381600-01
Chr09	irgsp1_rep	five_prime_UTR	12913683	12913828	.	+	.	Parent=Os09t0381600-01
Chr09	irgsp1_rep	CDS	12913829	12914141	.	+	0	Parent=Os09t0381600-01
Chr09	irgsp1_rep	CDS	12914225	12914373	.	+	2	Parent=Os09t0381600-01
Chr09	irgsp1_rep	CDS	12914468	12914632	.	+	0	Parent=Os09t0381600-01
Chr09	irgsp1_rep	three_prime_UTR	12914633	12914824	.	+	.	Parent=Os09t0381600-01
Chr09	irgsp1_rep	mRNA	12932341	12934218	.	-	.	ID=Os09t0381800-01;Name=Os09t0381800-01;Locus_id=Os09g0381800;Note=Zinc finger%2C BED-type predicted domain containing protein.;Transcript_evidence=AK241431 (DDBJ%2C Best hit);ORF_evidence=NP_001175813.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677);InterPro=Zinc finger%2C BED-type predicted (IPR003656),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J065161O22;TENOR=Os09t0381800-01;KEGG=Os09t0381800-01
Chr09	irgsp1_rep	five_prime_UTR	12934217	12934218	.	-	.	Parent=Os09t0381800-01
Chr09	irgsp1_rep	CDS	12934100	12934216	.	-	0	Parent=Os09t0381800-01
Chr09	irgsp1_rep	CDS	12933866	12933929	.	-	0	Parent=Os09t0381800-01
Chr09	irgsp1_rep	CDS	12932441	12933438	.	-	2	Parent=Os09t0381800-01
Chr09	irgsp1_rep	three_prime_UTR	12932341	12932440	.	-	.	Parent=Os09t0381800-01
Chr09	irgsp1_rep	mRNA	12935736	12937393	.	-	.	ID=Os09t0381850-00;Name=Os09t0381850-00;Locus_id=Os09g0381850;Note=HAT dimerisation domain containing protein.;Transcript_evidence=tplb0045f19 (Wheat FLcDNA);ORF_evidence=B8BF16 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein dimerization activity (GO:0046983);InterPro=HAT dimerisation (IPR008906),Ribonuclease H-like (IPR012337);TENOR=Os09t0381850-00
Chr09	irgsp1_rep	five_prime_UTR	12937386	12937393	.	-	.	Parent=Os09t0381850-00
Chr09	irgsp1_rep	CDS	12935736	12937385	.	-	0	Parent=Os09t0381850-00
Chr09	irgsp1_rep	mRNA	12953627	12957259	.	-	.	ID=Os09t0382000-01;Name=Os09t0382000-01;Locus_id=Os09g0382000;Note=Conserved hypothetical protein.;Transcript_evidence=AK288174 (DDBJ%2C Best hit);ORF_evidence=NP_001175814.1 (RefSeq);NIAS_FLcDNA=J090004I05;TENOR=Os09t0382000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	12957250	12957259	.	-	.	Parent=Os09t0382000-01
Chr09	irgsp1_rep	CDS	12956854	12957249	.	-	0	Parent=Os09t0382000-01
Chr09	irgsp1_rep	three_prime_UTR	12953627	12956853	.	-	.	Parent=Os09t0382000-01
Chr09	irgsp1_rep	mRNA	12957640	12959945	.	-	.	ID=Os09t0382120-00;Name=Os09t0382120-00;Locus_id=Os09g0382120;Note=Zinc finger%2C BED-type predicted domain containing protein.;Transcript_evidence=tplb0045f19 (Wheat FLcDNA);ORF_evidence=B8BF16 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677);InterPro=Zinc finger%2C BED-type predicted (IPR003656),Ribonuclease H-like (IPR012337);TENOR=Os09t0382120-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	12958782	12959945	.	-	0	Parent=Os09t0382120-00
Chr09	irgsp1_rep	three_prime_UTR	12958008	12958781	.	-	.	Parent=Os09t0382120-00
Chr09	irgsp1_rep	three_prime_UTR	12957640	12957841	.	-	.	Parent=Os09t0382120-00
Chr09	irgsp1_rep	mRNA	12968188	12968925	.	-	.	ID=Os09t0382200-01;Name=Os09t0382200-01;Locus_id=Os09g0382200;Note=Non-protein coding transcript.;Transcript_evidence=AK063210 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-112-D06;TENOR=Os09t0382200-01
Chr09	irgsp1_rep	exon	12968188	12968925	.	-	.	Parent=Os09t0382200-01
Chr09	irgsp1_rep	mRNA	12969034	12971764	.	-	.	ID=Os09t0382300-00;Name=Os09t0382300-00;Locus_id=Os09g0382300;CGSNL Gene Symbol=CYCD1%3B1;CGSNL Gene Name=CYCLIN-D1-1;Oryzabase Gene Symbol Synonym(s)=CycD1%3B1%2C CycD1%3Bos%3B1%2C Orysa%3BCycD1%3B1%2C Orysa%3BCYCD1%3B1;Oryzabase Gene Name Synonym(s)=D-type cyclin 1%3B1;Note=Cyclin-D2-1.;Transcript_evidence=Q0J233 (UniProt);ORF_evidence=Q0J233 (UniProt);GO=Biological Process: regulation of cyclin-dependent protein kinase activity (GO:0000079),Biological Process: regulation of cell cycle (GO:0051726),Cellular Component: nucleus (GO:0005634),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin%2C C-terminal (IPR004367),Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763),Cyclin A/B/D/E (IPR014400);Oryzabase=13263;TENOR=Os09t0382300-00
Chr09	irgsp1_rep	CDS	12971492	12971764	.	-	0	Parent=Os09t0382300-00
Chr09	irgsp1_rep	CDS	12971110	12971196	.	-	0	Parent=Os09t0382300-00
Chr09	irgsp1_rep	CDS	12969806	12969904	.	-	0	Parent=Os09t0382300-00
Chr09	irgsp1_rep	CDS	12969580	12969708	.	-	0	Parent=Os09t0382300-00
Chr09	irgsp1_rep	CDS	12969297	12969464	.	-	0	Parent=Os09t0382300-00
Chr09	irgsp1_rep	CDS	12969034	12969204	.	-	0	Parent=Os09t0382300-00
Chr09	irgsp1_rep	mRNA	12975278	12977293	.	-	.	ID=Os09t0382400-01;Name=Os09t0382400-01;Locus_id=Os09g0382400;Note=Conserved hypothetical protein.;Transcript_evidence=AK062891 (DDBJ%2C Best hit);ORF_evidence=B8BF17 (UniProt);NIAS_FLcDNA=001-108-E04;Expression=AK062891;TENOR=Os09t0382400-01;KEGG=Os09t0382400-01
Chr09	irgsp1_rep	five_prime_UTR	12977229	12977293	.	-	.	Parent=Os09t0382400-01
Chr09	irgsp1_rep	CDS	12977001	12977228	.	-	0	Parent=Os09t0382400-01
Chr09	irgsp1_rep	CDS	12976807	12976908	.	-	0	Parent=Os09t0382400-01
Chr09	irgsp1_rep	CDS	12975443	12975631	.	-	0	Parent=Os09t0382400-01
Chr09	irgsp1_rep	three_prime_UTR	12975278	12975442	.	-	.	Parent=Os09t0382400-01
Chr09	irgsp1_rep	mRNA	12977799	12980466	.	-	.	ID=Os09t0382500-01;Name=Os09t0382500-01;Locus_id=Os09g0382500;CGSNL Gene Symbol=SDH7;CGSNL Gene Name=SUCCINATE DEHYDROGENASE SUBUNIT 7;Oryzabase Gene Name Synonym(s)=SUCCINATE:UBIQUINONE OXIDOREDUCTASE;Note=Conserved hypothetical protein.;Transcript_evidence=AK105199 (DDBJ%2C Best hit);ORF_evidence=A2XWZ5 (UniProt);NIAS_FLcDNA=001-108-A05;Oryzabase=8753;Expression=AK105199;TENOR=Os09t0382500-01;KEGG=Os09t0382500-01
Chr09	irgsp1_rep	five_prime_UTR	12980418	12980466	.	-	.	Parent=Os09t0382500-01
Chr09	irgsp1_rep	CDS	12980286	12980417	.	-	0	Parent=Os09t0382500-01
Chr09	irgsp1_rep	CDS	12979051	12979153	.	-	0	Parent=Os09t0382500-01
Chr09	irgsp1_rep	CDS	12978086	12978123	.	-	2	Parent=Os09t0382500-01
Chr09	irgsp1_rep	three_prime_UTR	12977799	12978085	.	-	.	Parent=Os09t0382500-01
Chr09	irgsp1_rep	mRNA	13007404	13008004	.	-	.	ID=Os09t0383000-00;Name=Os09t0383000-00;Locus_id=Os09g0383000;Note=Plant disease resistance response protein domain containing protein.;Transcript_evidence=AK334402 (DDBJ);ORF_evidence=Q6H603 (UniProt);InterPro=Plant disease resistance response protein (IPR004265);TENOR=Os09t0383000-00
Chr09	irgsp1_rep	CDS	13007420	13008004	.	-	0	Parent=Os09t0383000-00
Chr09	irgsp1_rep	three_prime_UTR	13007404	13007419	.	-	.	Parent=Os09t0383000-00
Chr09	irgsp1_rep	mRNA	13014100	13015909	.	+	.	ID=Os09t0383300-01;Name=Os09t0383300-01;Locus_id=Os09g0383300;Oryzabase Gene Symbol Synonym(s)=MAPK;Note=Hypothetical conserved gene.;Transcript_evidence=AK287525 (DDBJ%2C Best hit);ORF_evidence=B9G3C5 (UniProt);NIAS_FLcDNA=J053082M22;Oryzabase=19089;TENOR=Os09t0383300-01;KEGG=Os09t0383300-01
Chr09	irgsp1_rep	five_prime_UTR	13014100	13014161	.	+	.	Parent=Os09t0383300-01
Chr09	irgsp1_rep	CDS	13014162	13014326	.	+	0	Parent=Os09t0383300-01
Chr09	irgsp1_rep	CDS	13014467	13014682	.	+	0	Parent=Os09t0383300-01
Chr09	irgsp1_rep	CDS	13014761	13015095	.	+	0	Parent=Os09t0383300-01
Chr09	irgsp1_rep	CDS	13015276	13015341	.	+	1	Parent=Os09t0383300-01
Chr09	irgsp1_rep	CDS	13015425	13015509	.	+	1	Parent=Os09t0383300-01
Chr09	irgsp1_rep	three_prime_UTR	13015510	13015563	.	+	.	Parent=Os09t0383300-01
Chr09	irgsp1_rep	three_prime_UTR	13015649	13015909	.	+	.	Parent=Os09t0383300-01
Chr09	irgsp1_rep	mRNA	13018787	13023093	.	+	.	ID=Os09t0383400-01;Name=Os09t0383400-01;Locus_id=Os09g0383400;Oryzabase Gene Symbol Synonym(s)=OsRH22;Oryzabase Gene Name Synonym(s)=RNA helicase 22;Note=DEAD-like helicase%2C N-terminal domain containing protein.;Transcript_evidence=AK103385 (DDBJ%2C Best hit);ORF_evidence=Q944S1 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=J033127H01;Oryzabase=19137;Expression=AK103385;TENOR=Os09t0383400-01;KEGG=Os09t0383400-01
Chr09	irgsp1_rep	CDS	13018787	13019107	.	+	0	Parent=Os09t0383400-01
Chr09	irgsp1_rep	CDS	13019851	13020138	.	+	0	Parent=Os09t0383400-01
Chr09	irgsp1_rep	CDS	13020455	13020577	.	+	0	Parent=Os09t0383400-01
Chr09	irgsp1_rep	CDS	13020932	13021362	.	+	0	Parent=Os09t0383400-01
Chr09	irgsp1_rep	CDS	13021614	13021947	.	+	1	Parent=Os09t0383400-01
Chr09	irgsp1_rep	three_prime_UTR	13021948	13023093	.	+	.	Parent=Os09t0383400-01
Chr09	irgsp1_rep	mRNA	13115787	13118864	.	+	.	ID=Os09t0384601-01;Name=Os09t0384601-01;Locus_id=Os09g0384601;Note=Hypothetical gene.;Transcript_evidence=AK288914 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090081J04;TENOR=Os09t0384601-01
Chr09	irgsp1_rep	five_prime_UTR	13115787	13118625	.	+	.	Parent=Os09t0384601-01
Chr09	irgsp1_rep	CDS	13118626	13118864	.	+	0	Parent=Os09t0384601-01
Chr09	irgsp1_rep	mRNA	13116492	13118744	.	-	.	ID=Os09t0384900-01;Name=Os09t0384900-01;Locus_id=Os09g0384900;Note=Protein of unknown function DUF295 family protein.;Transcript_evidence=AK064530 (DDBJ%2C Best hit);ORF_evidence=A2Z0T9 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174);NIAS_FLcDNA=002-111-H02;Expression=AK064530;TENOR=Os09t0384900-01;KEGG=Os09t0384900-01
Chr09	irgsp1_rep	five_prime_UTR	13118635	13118744	.	-	.	Parent=Os09t0384900-01
Chr09	irgsp1_rep	five_prime_UTR	13117769	13117788	.	-	.	Parent=Os09t0384900-01
Chr09	irgsp1_rep	CDS	13116545	13117768	.	-	0	Parent=Os09t0384900-01
Chr09	irgsp1_rep	three_prime_UTR	13116492	13116544	.	-	.	Parent=Os09t0384900-01
Chr09	irgsp1_rep	mRNA	13140415	13147163	.	-	.	ID=Os09t0385300-01;Name=Os09t0385300-01;Locus_id=Os09g0385300;Note=Hypothetical protein.;Transcript_evidence=AK120455 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013104G23;Expression=AK120455;TENOR=Os09t0385300-01;KEGG=Os09t0385300-01
Chr09	irgsp1_rep	five_prime_UTR	13146707	13147163	.	-	.	Parent=Os09t0385300-01
Chr09	irgsp1_rep	five_prime_UTR	13146591	13146635	.	-	.	Parent=Os09t0385300-01
Chr09	irgsp1_rep	CDS	13146363	13146590	.	-	0	Parent=Os09t0385300-01
Chr09	irgsp1_rep	CDS	13146080	13146235	.	-	0	Parent=Os09t0385300-01
Chr09	irgsp1_rep	three_prime_UTR	13140415	13146079	.	-	.	Parent=Os09t0385300-01
Chr09	irgsp1_rep	mRNA	13140958	13147159	.	-	.	ID=Os09t0385300-02;Name=Os09t0385300-02;Locus_id=Os09g0385300;Note=Hypothetical protein.;Transcript_evidence=AK073247 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033020J05;Expression=AK073247;TENOR=Os09t0385300-02;KEGG=Os09t0385300-02
Chr09	irgsp1_rep	five_prime_UTR	13146707	13147159	.	-	.	Parent=Os09t0385300-02
Chr09	irgsp1_rep	five_prime_UTR	13146591	13146635	.	-	.	Parent=Os09t0385300-02
Chr09	irgsp1_rep	CDS	13146363	13146590	.	-	0	Parent=Os09t0385300-02
Chr09	irgsp1_rep	CDS	13146080	13146235	.	-	0	Parent=Os09t0385300-02
Chr09	irgsp1_rep	three_prime_UTR	13146078	13146079	.	-	.	Parent=Os09t0385300-02
Chr09	irgsp1_rep	three_prime_UTR	13140958	13144288	.	-	.	Parent=Os09t0385300-02
Chr09	irgsp1_rep	mRNA	13155093	13155832	.	-	.	ID=Os09t0385700-01;Name=Os09t0385700-01;Locus_id=Os09g0385700;CGSNL Gene Symbol=SAP17;CGSNL Gene Name=STRESS ASSOCIATED PROTEIN GENE 17;Oryzabase Gene Symbol Synonym(s)=OsSAP17;Oryzabase Gene Name Synonym(s)=stress-associated protein 17;Note=Zinc finger%2C AN1-type domain containing protein.;Transcript_evidence=AK065210 (DDBJ%2C Best hit);ORF_evidence=Q6H595 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C AN1-type (IPR000058);NIAS_FLcDNA=J013002F20;Oryzabase=18191;Expression=AK065210;TENOR=Os09t0385700-01;KEGG=Os09t0385700-01
Chr09	irgsp1_rep	five_prime_UTR	13155767	13155832	.	-	.	Parent=Os09t0385700-01
Chr09	irgsp1_rep	CDS	13155200	13155766	.	-	0	Parent=Os09t0385700-01
Chr09	irgsp1_rep	three_prime_UTR	13155093	13155199	.	-	.	Parent=Os09t0385700-01
Chr09	irgsp1_rep	mRNA	13158329	13159646	.	-	.	ID=Os09t0385900-01;Name=Os09t0385900-01;Locus_id=Os09g0385900;Note=Conserved hypothetical protein.;Transcript_evidence=AK072555 (DDBJ%2C Best hit);ORF_evidence=B9G3C9 (UniProt);NIAS_FLcDNA=J023126E04;Expression=AK072555;TENOR=Os09t0385900-01;KEGG=Os09t0385900-01
Chr09	irgsp1_rep	five_prime_UTR	13159534	13159646	.	-	.	Parent=Os09t0385900-01
Chr09	irgsp1_rep	CDS	13158967	13159533	.	-	0	Parent=Os09t0385900-01
Chr09	irgsp1_rep	three_prime_UTR	13158329	13158966	.	-	.	Parent=Os09t0385900-01
Chr09	irgsp1_rep	mRNA	13164154	13166287	.	-	.	ID=Os09t0386200-01;Name=Os09t0386200-01;Locus_id=Os09g0386200;Oryzabase Gene Symbol Synonym(s)=OsPUB18;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 18%2C U-box protein 18;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK243643 (DDBJ%2C Best hit);ORF_evidence=NP_001147466.1 (RefSeq);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),U box domain (IPR003613),Armadillo-like helical (IPR011989),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J100088B02;Oryzabase=17810;TENOR=Os09t0386200-01;KEGG=Os09t0386200-01
Chr09	irgsp1_rep	five_prime_UTR	13166166	13166287	.	-	.	Parent=Os09t0386200-01
Chr09	irgsp1_rep	CDS	13164522	13166165	.	-	0	Parent=Os09t0386200-01
Chr09	irgsp1_rep	three_prime_UTR	13164154	13164521	.	-	.	Parent=Os09t0386200-01
Chr09	irgsp1_rep	mRNA	13174453	13178163	.	-	.	ID=Os09t0386400-01;Name=Os09t0386400-01;Locus_id=Os09g0386400;Note=Proteasome component region PCI domain containing protein.;Transcript_evidence=AK063271 (DDBJ%2C Best hit);ORF_evidence=NP_179546.2 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Proteasome component (PCI) domain (IPR000717),PCI/PINT associated module (IPR013143);NIAS_FLcDNA=001-113-B11;Expression=AK063271;TENOR=Os09t0386400-01;KEGG=Os09t0386400-01
Chr09	irgsp1_rep	five_prime_UTR	13177965	13178163	.	-	.	Parent=Os09t0386400-01
Chr09	irgsp1_rep	CDS	13177666	13177964	.	-	0	Parent=Os09t0386400-01
Chr09	irgsp1_rep	CDS	13177462	13177555	.	-	1	Parent=Os09t0386400-01
Chr09	irgsp1_rep	CDS	13177281	13177370	.	-	0	Parent=Os09t0386400-01
Chr09	irgsp1_rep	CDS	13176937	13177002	.	-	0	Parent=Os09t0386400-01
Chr09	irgsp1_rep	CDS	13176711	13176800	.	-	0	Parent=Os09t0386400-01
Chr09	irgsp1_rep	CDS	13176558	13176614	.	-	0	Parent=Os09t0386400-01
Chr09	irgsp1_rep	CDS	13176389	13176450	.	-	0	Parent=Os09t0386400-01
Chr09	irgsp1_rep	CDS	13176213	13176300	.	-	1	Parent=Os09t0386400-01
Chr09	irgsp1_rep	CDS	13175136	13175212	.	-	0	Parent=Os09t0386400-01
Chr09	irgsp1_rep	CDS	13174982	13175056	.	-	1	Parent=Os09t0386400-01
Chr09	irgsp1_rep	CDS	13174783	13174888	.	-	1	Parent=Os09t0386400-01
Chr09	irgsp1_rep	CDS	13174567	13174692	.	-	0	Parent=Os09t0386400-01
Chr09	irgsp1_rep	three_prime_UTR	13174453	13174566	.	-	.	Parent=Os09t0386400-01
Chr09	irgsp1_rep	mRNA	13177260	13177977	.	+	.	ID=Os09t0386450-00;Name=Os09t0386450-00;Locus_id=Os09g0386450;Note=Hypothetical gene.;Transcript_evidence=BT086903 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0386450-00
Chr09	irgsp1_rep	CDS	13177260	13177369	.	+	0	Parent=Os09t0386450-00
Chr09	irgsp1_rep	CDS	13177461	13177555	.	+	1	Parent=Os09t0386450-00
Chr09	irgsp1_rep	CDS	13177666	13177977	.	+	2	Parent=Os09t0386450-00
Chr09	irgsp1_rep	mRNA	13181330	13184736	.	+	.	ID=Os09t0386500-01;Name=Os09t0386500-01;Locus_id=Os09g0386500;RAP-DB Gene Symbol Synonym(s)=OsEBL2;RAP-DB Gene Name Synonym(s)=EARLY BOLTING IN SHORT DAYS-like 2%2C EBS-like 2;CGSNL Gene Symbol=EBL2;CGSNL Gene Name=EBS-LIKE 2;Oryzabase Gene Symbol Synonym(s)=OsEBL2;Oryzabase Gene Name Synonym(s)=EARLY BOLTING IN SHORT DAYS-like 2%2C EBS-like 2;Note=Homolog of Arabidopsis EBS (EARLY BOLTING IN SHORT DAYS)%2C BAH (Bromo adjacent homology) domain-containing protein;Transcript_evidence=AK064072,AK099307;ORF_evidence=Q6H591;GO=Molecular Function: Chromatin binding (GO:0003682);InterPro=Zinc finger%2C FYVE/PHD-type (IPR011011),Bromo adjacent homology (BAH) domain (IPR001025),Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C PHD-finger (IPR019787),Zinc finger%2C PHD-type%2C conserved site (IPR019786);NIAS_FLcDNA=001-125-G12,J023141K03;Manual Curation=June 12%2C 2019;Literature_PMID=30082786;Oryzabase=22670;TENOR=Os09t0386500-01
Chr09	irgsp1_rep	five_prime_UTR	13181330	13181419	.	+	.	Parent=Os09t0386500-01
Chr09	irgsp1_rep	CDS	13181420	13181492	.	+	0	Parent=Os09t0386500-01
Chr09	irgsp1_rep	CDS	13181582	13181924	.	+	2	Parent=Os09t0386500-01
Chr09	irgsp1_rep	CDS	13182059	13182127	.	+	1	Parent=Os09t0386500-01
Chr09	irgsp1_rep	CDS	13183457	13183595	.	+	1	Parent=Os09t0386500-01
Chr09	irgsp1_rep	CDS	13184312	13184338	.	+	0	Parent=Os09t0386500-01
Chr09	irgsp1_rep	three_prime_UTR	13184339	13184736	.	+	.	Parent=Os09t0386500-01
Chr09	irgsp1_rep	mRNA	13185362	13189707	.	-	.	ID=Os09t0386600-01;Name=Os09t0386600-01;Locus_id=Os09g0386600;Note=Conserved hypothetical protein.;Transcript_evidence=AK064522 (DDBJ%2C Best hit);ORF_evidence=B9G3D2 (UniProt);NIAS_FLcDNA=002-111-G01;TENOR=Os09t0386600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	13189706	13189707	.	-	.	Parent=Os09t0386600-01
Chr09	irgsp1_rep	CDS	13189574	13189705	.	-	0	Parent=Os09t0386600-01
Chr09	irgsp1_rep	CDS	13188922	13189098	.	-	0	Parent=Os09t0386600-01
Chr09	irgsp1_rep	CDS	13188194	13188403	.	-	0	Parent=Os09t0386600-01
Chr09	irgsp1_rep	CDS	13187615	13187800	.	-	0	Parent=Os09t0386600-01
Chr09	irgsp1_rep	CDS	13187323	13187482	.	-	0	Parent=Os09t0386600-01
Chr09	irgsp1_rep	CDS	13186830	13187034	.	-	2	Parent=Os09t0386600-01
Chr09	irgsp1_rep	CDS	13186067	13186199	.	-	1	Parent=Os09t0386600-01
Chr09	irgsp1_rep	CDS	13185519	13185671	.	-	0	Parent=Os09t0386600-01
Chr09	irgsp1_rep	three_prime_UTR	13185362	13185518	.	-	.	Parent=Os09t0386600-01
Chr09	irgsp1_rep	mRNA	13216004	13217713	.	-	.	ID=Os09t0387000-00;Name=Os09t0387000-00;Locus_id=Os09g0387000;Note=Conserved hypothetical protein.;Transcript_evidence=CU861724 (DDBJ%2C Best hit);ORF_evidence=NP_001175817.1 (RefSeq);TENOR=Os09t0387000-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	13217396	13217713	.	-	.	Parent=Os09t0387000-00
Chr09	irgsp1_rep	CDS	13217319	13217395	.	-	0	Parent=Os09t0387000-00
Chr09	irgsp1_rep	CDS	13216081	13216189	.	-	1	Parent=Os09t0387000-00
Chr09	irgsp1_rep	three_prime_UTR	13216004	13216080	.	-	.	Parent=Os09t0387000-00
Chr09	irgsp1_rep	mRNA	13208509	13211709	.	-	.	ID=Os09t0387150-01;Name=Os09t0387150-01;Locus_id=Os09g0387150;Note=Conserved hypothetical protein.;Transcript_evidence=AK241448 (DDBJ%2C Best hit);ORF_evidence=A2Z0V1 (UniProt);NIAS_FLcDNA=J065163F06;TENOR=Os09t0387150-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	13211709	13211709	.	-	.	Parent=Os09t0387150-01
Chr09	irgsp1_rep	CDS	13211088	13211708	.	-	0	Parent=Os09t0387150-01
Chr09	irgsp1_rep	three_prime_UTR	13210914	13211087	.	-	.	Parent=Os09t0387150-01
Chr09	irgsp1_rep	three_prime_UTR	13208509	13210818	.	-	.	Parent=Os09t0387150-01
Chr09	irgsp1_rep	mRNA	13259206	13260189	.	-	.	ID=Os09t0387800-01;Name=Os09t0387800-01;Locus_id=Os09g0387800;Note=Conserved hypothetical protein.;Transcript_evidence=AK111290 (DDBJ%2C Best hit);ORF_evidence=Q7X997 (UniProt);NIAS_FLcDNA=002-181-A01;Expression=AK111290;TENOR=Os09t0387800-01;KEGG=Os09t0387800-01
Chr09	irgsp1_rep	five_prime_UTR	13259933	13260189	.	-	.	Parent=Os09t0387800-01
Chr09	irgsp1_rep	CDS	13259762	13259932	.	-	0	Parent=Os09t0387800-01
Chr09	irgsp1_rep	CDS	13259492	13259677	.	-	0	Parent=Os09t0387800-01
Chr09	irgsp1_rep	three_prime_UTR	13259206	13259491	.	-	.	Parent=Os09t0387800-01
Chr09	irgsp1_rep	mRNA	13262607	13264544	.	-	.	ID=Os09t0388000-01;Name=Os09t0388000-01;Locus_id=Os09g0388000;Note=Non-protein coding transcript.;Transcript_evidence=AK110944 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-173-H04;TENOR=Os09t0388000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	exon	13264326	13264544	.	-	.	Parent=Os09t0388000-01
Chr09	irgsp1_rep	exon	13263501	13263548	.	-	.	Parent=Os09t0388000-01
Chr09	irgsp1_rep	exon	13262607	13262864	.	-	.	Parent=Os09t0388000-01
Chr09	irgsp1_rep	mRNA	13319823	13325701	.	+	.	ID=Os09t0388400-01;Name=Os09t0388400-01;Locus_id=Os09g0388400;Note=HAD superfamily hydrolase-like%2C type 3 domain containing protein.;Transcript_evidence=AK069644 (DDBJ%2C Best hit);ORF_evidence=NP_850072.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity (GO:0016787);InterPro=Cof protein (IPR000150),HAD-superfamily hydrolase%2C subfamily IIB (IPR006379),HAD superfamily hydrolase-like%2C type 3 (IPR013200),HAD-like domain (IPR023214);NIAS_FLcDNA=J023027H14;Expression=AK069644;TENOR=Os09t0388400-01;KEGG=Os09t0388400-01
Chr09	irgsp1_rep	five_prime_UTR	13319823	13319830	.	+	.	Parent=Os09t0388400-01
Chr09	irgsp1_rep	CDS	13319831	13320080	.	+	0	Parent=Os09t0388400-01
Chr09	irgsp1_rep	CDS	13321875	13321952	.	+	2	Parent=Os09t0388400-01
Chr09	irgsp1_rep	CDS	13322025	13322125	.	+	2	Parent=Os09t0388400-01
Chr09	irgsp1_rep	CDS	13322225	13322317	.	+	0	Parent=Os09t0388400-01
Chr09	irgsp1_rep	CDS	13322399	13322470	.	+	0	Parent=Os09t0388400-01
Chr09	irgsp1_rep	CDS	13322559	13322681	.	+	0	Parent=Os09t0388400-01
Chr09	irgsp1_rep	CDS	13324905	13324955	.	+	0	Parent=Os09t0388400-01
Chr09	irgsp1_rep	CDS	13325076	13325264	.	+	0	Parent=Os09t0388400-01
Chr09	irgsp1_rep	CDS	13325364	13325528	.	+	0	Parent=Os09t0388400-01
Chr09	irgsp1_rep	three_prime_UTR	13325529	13325701	.	+	.	Parent=Os09t0388400-01
Chr09	irgsp1_rep	mRNA	13322903	13324760	.	-	.	ID=Os09t0388550-00;Name=Os09t0388550-00;Locus_id=Os09g0388550;Note=Similar to mitochondrial carrier YMR166C.;Transcript_evidence=ab initio prediction;ORF_evidence=B6T2V1 (UniProt);TENOR=Os09t0388550-00
Chr09	irgsp1_rep	CDS	13324742	13324760	.	-	0	Parent=Os09t0388550-00
Chr09	irgsp1_rep	CDS	13323656	13323805	.	-	2	Parent=Os09t0388550-00
Chr09	irgsp1_rep	CDS	13322903	13323177	.	-	2	Parent=Os09t0388550-00
Chr09	irgsp1_rep	mRNA	13376227	13379265	.	+	.	ID=Os09t0388850-01;Name=Os09t0388850-01;Locus_id=Os09g0388850;Note=Hypothetical gene.;Transcript_evidence=AK288870 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090078E08;TENOR=Os09t0388850-01;KEGG=Os09t0388850-01
Chr09	irgsp1_rep	five_prime_UTR	13376227	13377312	.	+	.	Parent=Os09t0388850-01
Chr09	irgsp1_rep	CDS	13377313	13377549	.	+	0	Parent=Os09t0388850-01
Chr09	irgsp1_rep	three_prime_UTR	13377550	13379265	.	+	.	Parent=Os09t0388850-01
Chr09	irgsp1_rep	mRNA	13379272	13381517	.	-	.	ID=Os09t0389000-01;Name=Os09t0389000-01;Locus_id=Os09g0389000;Oryzabase Gene Symbol Synonym(s)=OsSTA225;Note=Conserved hypothetical protein.;Transcript_evidence=AK288553 (DDBJ%2C Best hit);ORF_evidence=Q6ZB86 (UniProt);NIAS_FLcDNA=J090046N21;Oryzabase=19497;TENOR=Os09t0389000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	13380128	13381517	.	-	.	Parent=Os09t0389000-01
Chr09	irgsp1_rep	CDS	13379882	13380127	.	-	0	Parent=Os09t0389000-01
Chr09	irgsp1_rep	three_prime_UTR	13379272	13379881	.	-	.	Parent=Os09t0389000-01
Chr09	irgsp1_rep	mRNA	13369644	13372929	.	-	.	ID=Os09t0389201-01;Name=Os09t0389201-01;Locus_id=Os09g0389201;Note=Non-protein coding transcript.;Transcript_evidence=AK241737 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065200L10;TENOR=Os09t0389201-01
Chr09	irgsp1_rep	exon	13370664	13372929	.	-	.	Parent=Os09t0389201-01
Chr09	irgsp1_rep	exon	13369644	13370483	.	-	.	Parent=Os09t0389201-01
Chr09	irgsp1_rep	mRNA	13470483	13472871	.	+	.	ID=Os09t0390400-01;Name=Os09t0390400-01;Locus_id=Os09g0390400;Note=Similar to OsRAD23-like.;Transcript_evidence=AK071796 (DDBJ%2C Best hit);ORF_evidence=C8TF44 (UniProt);NIAS_FLcDNA=J023114I06;Expression=AK071796;TENOR=Os09t0390400-01;KEGG=Os09t0390400-01
Chr09	irgsp1_rep	five_prime_UTR	13470483	13470824	.	+	.	Parent=Os09t0390400-01
Chr09	irgsp1_rep	five_prime_UTR	13470933	13471086	.	+	.	Parent=Os09t0390400-01
Chr09	irgsp1_rep	five_prime_UTR	13471437	13471546	.	+	.	Parent=Os09t0390400-01
Chr09	irgsp1_rep	five_prime_UTR	13472120	13472232	.	+	.	Parent=Os09t0390400-01
Chr09	irgsp1_rep	five_prime_UTR	13472310	13472374	.	+	.	Parent=Os09t0390400-01
Chr09	irgsp1_rep	CDS	13472375	13472375	.	+	0	Parent=Os09t0390400-01
Chr09	irgsp1_rep	CDS	13472525	13472766	.	+	2	Parent=Os09t0390400-01
Chr09	irgsp1_rep	three_prime_UTR	13472767	13472871	.	+	.	Parent=Os09t0390400-01
Chr09	irgsp1_rep	mRNA	13533833	13534255	.	+	.	ID=Os09t0391501-00;Name=Os09t0391501-00;Locus_id=Os09g0391501;Note=Hypothetical gene.;Transcript_evidence=CT835895 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os09t0391501-00;KEGG=Os09t0391501-00
Chr09	irgsp1_rep	five_prime_UTR	13533833	13533847	.	+	.	Parent=Os09t0391501-00
Chr09	irgsp1_rep	CDS	13533848	13534063	.	+	0	Parent=Os09t0391501-00
Chr09	irgsp1_rep	three_prime_UTR	13534064	13534255	.	+	.	Parent=Os09t0391501-00
Chr09	irgsp1_rep	mRNA	13543588	13545119	.	+	.	ID=Os09t0391800-00;Name=Os09t0391800-00;Locus_id=Os09g0391800;Note=Hypothetical gene.;Transcript_evidence=CT837853 (DDBJ%2C Best hit);ORF_evidence=Q6H418 (UniProt);TENOR=Os09t0391800-00;KEGG=Os09t0391800-00
Chr09	irgsp1_rep	five_prime_UTR	13543588	13543595	.	+	.	Parent=Os09t0391800-00
Chr09	irgsp1_rep	CDS	13543596	13544267	.	+	0	Parent=Os09t0391800-00
Chr09	irgsp1_rep	three_prime_UTR	13544268	13544269	.	+	.	Parent=Os09t0391800-00
Chr09	irgsp1_rep	three_prime_UTR	13544361	13544703	.	+	.	Parent=Os09t0391800-00
Chr09	irgsp1_rep	three_prime_UTR	13544814	13545119	.	+	.	Parent=Os09t0391800-00
Chr09	irgsp1_rep	mRNA	13553673	13558013	.	+	.	ID=Os09t0392000-01;Name=Os09t0392000-01;Locus_id=Os09g0392000;Note=Similar to mRNA%2C clone: RTFL01-05-M08.;Transcript_evidence=AK120392 (DDBJ%2C Best hit);ORF_evidence=E4MW90 (UniProt);NIAS_FLcDNA=J013074N02;Expression=AK120392;TENOR=Os09t0392000-01;KEGG=Os09t0392000-01
Chr09	irgsp1_rep	five_prime_UTR	13553673	13553801	.	+	.	Parent=Os09t0392000-01
Chr09	irgsp1_rep	CDS	13553802	13554185	.	+	0	Parent=Os09t0392000-01
Chr09	irgsp1_rep	CDS	13555143	13555283	.	+	0	Parent=Os09t0392000-01
Chr09	irgsp1_rep	CDS	13555382	13555747	.	+	0	Parent=Os09t0392000-01
Chr09	irgsp1_rep	CDS	13556201	13556443	.	+	0	Parent=Os09t0392000-01
Chr09	irgsp1_rep	CDS	13556702	13556794	.	+	0	Parent=Os09t0392000-01
Chr09	irgsp1_rep	CDS	13557210	13557410	.	+	0	Parent=Os09t0392000-01
Chr09	irgsp1_rep	CDS	13557560	13557772	.	+	0	Parent=Os09t0392000-01
Chr09	irgsp1_rep	three_prime_UTR	13557773	13558013	.	+	.	Parent=Os09t0392000-01
Chr09	irgsp1_rep	mRNA	13553852	13557772	.	-	.	ID=Os09t0392050-00;Name=Os09t0392050-00;Locus_id=Os09g0392050;Note=Hypothetical protein.;Transcript_evidence=tplb0042d04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0392050-00
Chr09	irgsp1_rep	five_prime_UTR	13557569	13557772	.	-	.	Parent=Os09t0392050-00
Chr09	irgsp1_rep	five_prime_UTR	13557219	13557418	.	-	.	Parent=Os09t0392050-00
Chr09	irgsp1_rep	five_prime_UTR	13556691	13556806	.	-	.	Parent=Os09t0392050-00
Chr09	irgsp1_rep	five_prime_UTR	13556186	13556428	.	-	.	Parent=Os09t0392050-00
Chr09	irgsp1_rep	five_prime_UTR	13555392	13555731	.	-	.	Parent=Os09t0392050-00
Chr09	irgsp1_rep	five_prime_UTR	13555172	13555292	.	-	.	Parent=Os09t0392050-00
Chr09	irgsp1_rep	CDS	13555141	13555171	.	-	0	Parent=Os09t0392050-00
Chr09	irgsp1_rep	CDS	13553852	13554183	.	-	2	Parent=Os09t0392050-00
Chr09	irgsp1_rep	mRNA	13559548	13563053	.	+	.	ID=Os09t0392100-01;Name=Os09t0392100-01;Locus_id=Os09g0392100;RAP-DB Gene Symbol Synonym(s)=OsEDS1;RAP-DB Gene Name Synonym(s)=Enhanced disease susceptibility 1;CGSNL Gene Symbol=EDS1;CGSNL Gene Name=ENHANCED DISEASE SUSCEPTIBILITY 1;Oryzabase Gene Symbol Synonym(s)=OsEDS1;Oryzabase Gene Name Synonym(s)=enhanced disease susceptibility 1%2C ENHANCED DISEASE SUSCEPTIBILITY1%2C Arabidopsis EDS1 homolog;Note=Ortholog of Arabidopsis EDS1%2C Regulation of rice-pathogen interactions%2C Disease resistance;Transcript_evidence=AK100117;ORF_evidence=Q6H415;GO=Biological Process: lipid metabolic process (GO:0006629);InterPro=Alpha/Beta hydrolase fold (IPR029058),Fungal lipase-like domain (IPR002921);NIAS_FLcDNA=J023007E18;Manual Curation=April 18%2C 2019;Literature_PMID=30989404;Oryzabase=10460;Expression=AK100117;TENOR=Os09t0392100-01;KEGG=Os09t0392100-01
Chr09	irgsp1_rep	five_prime_UTR	13559548	13559650	.	+	.	Parent=Os09t0392100-01
Chr09	irgsp1_rep	CDS	13559651	13560028	.	+	0	Parent=Os09t0392100-01
Chr09	irgsp1_rep	CDS	13561047	13561814	.	+	0	Parent=Os09t0392100-01
Chr09	irgsp1_rep	CDS	13562163	13562882	.	+	0	Parent=Os09t0392100-01
Chr09	irgsp1_rep	three_prime_UTR	13562883	13563053	.	+	.	Parent=Os09t0392100-01
Chr09	irgsp1_rep	mRNA	13569114	13575139	.	-	.	ID=Os09t0392400-01;Name=Os09t0392400-01;Locus_id=Os09g0392400;Note=Similar to Pleiotropic drug resistance protein 13.;Transcript_evidence=AK072152 (DDBJ%2C Best hit);ORF_evidence=Q8S628 (UniProt);NIAS_FLcDNA=J013135O09;Expression=AK072152;TENOR=Os09t0392400-01;KEGG=Os09t0392400-01
Chr09	irgsp1_rep	five_prime_UTR	13574684	13575139	.	-	.	Parent=Os09t0392400-01
Chr09	irgsp1_rep	five_prime_UTR	13573799	13574419	.	-	.	Parent=Os09t0392400-01
Chr09	irgsp1_rep	five_prime_UTR	13572759	13572803	.	-	.	Parent=Os09t0392400-01
Chr09	irgsp1_rep	five_prime_UTR	13571350	13571763	.	-	.	Parent=Os09t0392400-01
Chr09	irgsp1_rep	CDS	13571326	13571349	.	-	0	Parent=Os09t0392400-01
Chr09	irgsp1_rep	CDS	13571027	13571199	.	-	0	Parent=Os09t0392400-01
Chr09	irgsp1_rep	CDS	13570481	13570601	.	-	1	Parent=Os09t0392400-01
Chr09	irgsp1_rep	three_prime_UTR	13569114	13570480	.	-	.	Parent=Os09t0392400-01
Chr09	irgsp1_rep	mRNA	13569810	13575139	.	-	.	ID=Os09t0392400-02;Name=Os09t0392400-02;Locus_id=Os09g0392400;Note=PDR13 ABC transporter.;Transcript_evidence=AK065003 (DDBJ%2C Best hit);ORF_evidence=Q8S628 (UniProt);NIAS_FLcDNA=J013001E08;Expression=AK065003;TENOR=Os09t0392400-02;KEGG=Os09t0392400-02
Chr09	irgsp1_rep	five_prime_UTR	13574684	13575139	.	-	.	Parent=Os09t0392400-02
Chr09	irgsp1_rep	five_prime_UTR	13571326	13574419	.	-	.	Parent=Os09t0392400-02
Chr09	irgsp1_rep	five_prime_UTR	13570509	13571199	.	-	.	Parent=Os09t0392400-02
Chr09	irgsp1_rep	CDS	13570302	13570508	.	-	0	Parent=Os09t0392400-02
Chr09	irgsp1_rep	three_prime_UTR	13570088	13570301	.	-	.	Parent=Os09t0392400-02
Chr09	irgsp1_rep	three_prime_UTR	13569810	13570007	.	-	.	Parent=Os09t0392400-02
Chr09	irgsp1_rep	mRNA	13573906	13575112	.	-	.	ID=Os09t0392400-03;Name=Os09t0392400-03;Locus_id=Os09g0392400;Note=Hypothetical gene.;Transcript_evidence=AK072609 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023132H22;Expression=AK072609;TENOR=Os09t0392400-03;KEGG=Os09t0392400-03
Chr09	irgsp1_rep	five_prime_UTR	13575112	13575112	.	-	.	Parent=Os09t0392400-03
Chr09	irgsp1_rep	CDS	13574827	13575111	.	-	0	Parent=Os09t0392400-03
Chr09	irgsp1_rep	three_prime_UTR	13574684	13574826	.	-	.	Parent=Os09t0392400-03
Chr09	irgsp1_rep	three_prime_UTR	13573906	13574419	.	-	.	Parent=Os09t0392400-03
Chr09	irgsp1_rep	mRNA	13567238	13571192	.	-	.	ID=Os09t0392400-04;Name=Os09t0392400-04;Locus_id=Os09g0392400;Note=Similar to Pleiotropic drug resistance protein 13.;Transcript_evidence=AK106799 (DDBJ%2C Best hit);ORF_evidence=Q8S628 (UniProt);NIAS_FLcDNA=002-116-B09;TENOR=Os09t0392400-04;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	13571191	13571192	.	-	.	Parent=Os09t0392400-04
Chr09	irgsp1_rep	CDS	13571027	13571190	.	-	0	Parent=Os09t0392400-04
Chr09	irgsp1_rep	CDS	13570481	13570601	.	-	1	Parent=Os09t0392400-04
Chr09	irgsp1_rep	three_prime_UTR	13570088	13570480	.	-	.	Parent=Os09t0392400-04
Chr09	irgsp1_rep	three_prime_UTR	13569036	13570007	.	-	.	Parent=Os09t0392400-04
Chr09	irgsp1_rep	three_prime_UTR	13567238	13567704	.	-	.	Parent=Os09t0392400-04
Chr09	irgsp1_rep	mRNA	13576635	13577704	.	-	.	ID=Os09t0392666-01;Name=Os09t0392666-01;Locus_id=Os09g0392666;Note=Conserved hypothetical protein.;Transcript_evidence=AK242470 (DDBJ%2C Best hit);ORF_evidence=Q6H411 (UniProt);NIAS_FLcDNA=J080302H11;TENOR=Os09t0392666-01;KEGG=Os09t0392666-01
Chr09	irgsp1_rep	CDS	13577039	13577704	.	-	0	Parent=Os09t0392666-01
Chr09	irgsp1_rep	three_prime_UTR	13576635	13577038	.	-	.	Parent=Os09t0392666-01
Chr09	irgsp1_rep	mRNA	13580178	13581021	.	+	.	ID=Os09t0392700-01;Name=Os09t0392700-01;Locus_id=Os09g0392700;Note=Hypothetical conserved gene.;Transcript_evidence=AK106872 (DDBJ%2C Best hit);ORF_evidence=Q10LN0 (UniProt);NIAS_FLcDNA=002-118-D09;Expression=AK106872;TENOR=Os09t0392700-01;KEGG=Os09t0392700-01
Chr09	irgsp1_rep	CDS	13580178	13580927	.	+	0	Parent=Os09t0392700-01
Chr09	irgsp1_rep	three_prime_UTR	13580928	13581021	.	+	.	Parent=Os09t0392700-01
Chr09	irgsp1_rep	mRNA	13595422	13601889	.	+	.	ID=Os09t0393200-01;Name=Os09t0393200-01;Locus_id=Os09g0393200;CGSNL Gene Symbol=JMJ718;CGSNL Gene Name=JUMONJI 718;Oryzabase Gene Symbol Synonym(s)=OsJMJ718;Oryzabase Gene Name Synonym(s)=Jumonji 718;Note=Similar to transcription factor jumonji (jmjC) domain-containing protein.;Transcript_evidence=AK059445 (DDBJ%2C Best hit);ORF_evidence=NP_176421.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Transcription factor jumonji/aspartyl beta-hydroxylase (IPR003347),Transcription factor jumonji (IPR013129);NIAS_FLcDNA=001-028-A06;Oryzabase=15210;TENOR=Os09t0393200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	13595422	13595646	.	+	0	Parent=Os09t0393200-01
Chr09	irgsp1_rep	CDS	13596534	13596863	.	+	0	Parent=Os09t0393200-01
Chr09	irgsp1_rep	CDS	13597193	13597498	.	+	0	Parent=Os09t0393200-01
Chr09	irgsp1_rep	CDS	13597575	13597647	.	+	0	Parent=Os09t0393200-01
Chr09	irgsp1_rep	CDS	13597755	13597840	.	+	2	Parent=Os09t0393200-01
Chr09	irgsp1_rep	CDS	13597970	13598089	.	+	0	Parent=Os09t0393200-01
Chr09	irgsp1_rep	CDS	13601740	13601853	.	+	0	Parent=Os09t0393200-01
Chr09	irgsp1_rep	three_prime_UTR	13601854	13601889	.	+	.	Parent=Os09t0393200-01
Chr09	irgsp1_rep	mRNA	13622417	13625096	.	-	.	ID=Os09t0393501-00;Name=Os09t0393501-00;Locus_id=Os09g0393501;Note=Similar to haloacid dehalogenase-like hydrolase family protein.;Transcript_evidence=AK366869 (DDBJ);ORF_evidence=NP_850072.1 (RefSeq);InterPro=HAD superfamily hydrolase-like%2C type 3 (IPR013200),HAD-like domain (IPR023214);TENOR=Os09t0393501-00
Chr09	irgsp1_rep	five_prime_UTR	13624954	13625096	.	-	.	Parent=Os09t0393501-00
Chr09	irgsp1_rep	five_prime_UTR	13624717	13624853	.	-	.	Parent=Os09t0393501-00
Chr09	irgsp1_rep	five_prime_UTR	13624448	13624542	.	-	.	Parent=Os09t0393501-00
Chr09	irgsp1_rep	CDS	13624401	13624447	.	-	0	Parent=Os09t0393501-00
Chr09	irgsp1_rep	CDS	13622700	13622949	.	-	1	Parent=Os09t0393501-00
Chr09	irgsp1_rep	CDS	13622511	13622600	.	-	0	Parent=Os09t0393501-00
Chr09	irgsp1_rep	three_prime_UTR	13622417	13622510	.	-	.	Parent=Os09t0393501-00
Chr09	irgsp1_rep	mRNA	13623023	13623412	.	+	.	ID=Os09t0393801-00;Name=Os09t0393801-00;Locus_id=Os09g0393801;Note=Similar to haloacid dehalogenase-like hydrolase family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_850072.1 (RefSeq);InterPro=HAD superfamily hydrolase-like%2C type 3 (IPR013200),HAD-like domain (IPR023214);TENOR=Os09t0393801-00;KEGG=Os09t0393801-00
Chr09	irgsp1_rep	CDS	13623023	13623223	.	+	0	Parent=Os09t0393801-00
Chr09	irgsp1_rep	CDS	13623323	13623412	.	+	0	Parent=Os09t0393801-00
Chr09	irgsp1_rep	mRNA	13626143	13629832	.	-	.	ID=Os09t0394100-01;Name=Os09t0394100-01;Locus_id=Os09g0394100;Note=Malonyl-CoA decarboxylase family protein.;Transcript_evidence=AK120537 (DDBJ%2C Best hit);ORF_evidence=NP_974511.1 (RefSeq);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Molecular Function: malonyl-CoA decarboxylase activity (GO:0050080);InterPro=Malonyl-CoA decarboxylase (IPR007956);NIAS_FLcDNA=J013129C08;Expression=AK120537;TENOR=Os09t0394100-01;KEGG=Os09t0394100-01
Chr09	irgsp1_rep	five_prime_UTR	13629740	13629832	.	-	.	Parent=Os09t0394100-01
Chr09	irgsp1_rep	CDS	13629204	13629739	.	-	0	Parent=Os09t0394100-01
Chr09	irgsp1_rep	CDS	13628949	13629093	.	-	1	Parent=Os09t0394100-01
Chr09	irgsp1_rep	CDS	13628773	13628863	.	-	0	Parent=Os09t0394100-01
Chr09	irgsp1_rep	CDS	13628464	13628522	.	-	2	Parent=Os09t0394100-01
Chr09	irgsp1_rep	CDS	13628310	13628387	.	-	0	Parent=Os09t0394100-01
Chr09	irgsp1_rep	CDS	13628113	13628196	.	-	0	Parent=Os09t0394100-01
Chr09	irgsp1_rep	CDS	13627762	13627940	.	-	0	Parent=Os09t0394100-01
Chr09	irgsp1_rep	CDS	13627339	13627461	.	-	1	Parent=Os09t0394100-01
Chr09	irgsp1_rep	CDS	13627185	13627257	.	-	1	Parent=Os09t0394100-01
Chr09	irgsp1_rep	CDS	13626794	13626879	.	-	0	Parent=Os09t0394100-01
Chr09	irgsp1_rep	CDS	13626603	13626693	.	-	1	Parent=Os09t0394100-01
Chr09	irgsp1_rep	three_prime_UTR	13626143	13626602	.	-	.	Parent=Os09t0394100-01
Chr09	irgsp1_rep	mRNA	13631743	13640237	.	-	.	ID=Os09t0394300-01;Name=Os09t0394300-01;Locus_id=Os09g0394300;CGSNL Gene Symbol=GH9B11;CGSNL Gene Name=GLYCOSIDE HYDROLASE 9B11;Oryzabase Gene Symbol Synonym(s)=OsGH9B11;Oryzabase Gene Name Synonym(s)=glycoside hydrolase OsGH9B11%2C glycoside hydrolase 9B11;Note=Glycoside hydrolase%2C family 9 protein.;Transcript_evidence=AK105580 (DDBJ%2C Best hit);ORF_evidence=Q6H3Z9 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 9 (IPR001701),Six-hairpin glycosidase-like (IPR008928),Six-hairpin glycosidase (IPR012341),Glycoside hydrolase%2C family 9%2C active site (IPR018221);NIAS_FLcDNA=001-128-E04;Oryzabase=11711;Expression=AK105580;TENOR=Os09t0394300-01;KEGG=Os09t0394300-01
Chr09	irgsp1_rep	five_prime_UTR	13640236	13640237	.	-	.	Parent=Os09t0394300-01
Chr09	irgsp1_rep	CDS	13640080	13640235	.	-	0	Parent=Os09t0394300-01
Chr09	irgsp1_rep	CDS	13639423	13639878	.	-	0	Parent=Os09t0394300-01
Chr09	irgsp1_rep	CDS	13632020	13632733	.	-	0	Parent=Os09t0394300-01
Chr09	irgsp1_rep	three_prime_UTR	13631743	13632019	.	-	.	Parent=Os09t0394300-01
Chr09	irgsp1_rep	mRNA	13666487	13671252	.	+	.	ID=Os09t0394500-01;Name=Os09t0394500-01;Locus_id=Os09g0394500;Note=Similar to predicted protein.;Transcript_evidence=AK241015 (DDBJ%2C Best hit);ORF_evidence=B8BF44 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J065054A13;TENOR=Os09t0394500-01;KEGG=Os09t0394500-01
Chr09	irgsp1_rep	five_prime_UTR	13666487	13666710	.	+	.	Parent=Os09t0394500-01
Chr09	irgsp1_rep	CDS	13666711	13666942	.	+	0	Parent=Os09t0394500-01
Chr09	irgsp1_rep	CDS	13667032	13667161	.	+	2	Parent=Os09t0394500-01
Chr09	irgsp1_rep	CDS	13667377	13667577	.	+	1	Parent=Os09t0394500-01
Chr09	irgsp1_rep	CDS	13667737	13667836	.	+	1	Parent=Os09t0394500-01
Chr09	irgsp1_rep	CDS	13667980	13668092	.	+	0	Parent=Os09t0394500-01
Chr09	irgsp1_rep	CDS	13668522	13668615	.	+	1	Parent=Os09t0394500-01
Chr09	irgsp1_rep	CDS	13668693	13668843	.	+	0	Parent=Os09t0394500-01
Chr09	irgsp1_rep	CDS	13669428	13669574	.	+	2	Parent=Os09t0394500-01
Chr09	irgsp1_rep	CDS	13669645	13669718	.	+	2	Parent=Os09t0394500-01
Chr09	irgsp1_rep	CDS	13669939	13670027	.	+	0	Parent=Os09t0394500-01
Chr09	irgsp1_rep	CDS	13670491	13670605	.	+	1	Parent=Os09t0394500-01
Chr09	irgsp1_rep	CDS	13670755	13670952	.	+	0	Parent=Os09t0394500-01
Chr09	irgsp1_rep	three_prime_UTR	13670953	13671252	.	+	.	Parent=Os09t0394500-01
Chr09	irgsp1_rep	mRNA	13688245	13690936	.	-	.	ID=Os09t0394600-01;Name=Os09t0394600-01;Locus_id=Os09g0394600;Note=Endonuclease/exonuclease/phosphatase domain containing protein.;Transcript_evidence=AK065379 (DDBJ%2C Best hit);ORF_evidence=NP_178299.1 (RefSeq);GO=Molecular Function: inositol or phosphatidylinositol phosphatase activity (GO:0004437);InterPro=Inositol polyphosphate-related phosphatase (IPR000300),Endonuclease/exonuclease/phosphatase (IPR005135);NIAS_FLcDNA=J013012D06;Expression=AK065379;TENOR=Os09t0394600-01;KEGG=Os09t0394600-01
Chr09	irgsp1_rep	five_prime_UTR	13690889	13690936	.	-	.	Parent=Os09t0394600-01
Chr09	irgsp1_rep	CDS	13690874	13690888	.	-	0	Parent=Os09t0394600-01
Chr09	irgsp1_rep	CDS	13690645	13690790	.	-	0	Parent=Os09t0394600-01
Chr09	irgsp1_rep	CDS	13690447	13690554	.	-	1	Parent=Os09t0394600-01
Chr09	irgsp1_rep	CDS	13690023	13690338	.	-	1	Parent=Os09t0394600-01
Chr09	irgsp1_rep	CDS	13689747	13689931	.	-	0	Parent=Os09t0394600-01
Chr09	irgsp1_rep	CDS	13689215	13689323	.	-	1	Parent=Os09t0394600-01
Chr09	irgsp1_rep	CDS	13688937	13689088	.	-	0	Parent=Os09t0394600-01
Chr09	irgsp1_rep	CDS	13688656	13688830	.	-	1	Parent=Os09t0394600-01
Chr09	irgsp1_rep	three_prime_UTR	13688245	13688655	.	-	.	Parent=Os09t0394600-01
Chr09	irgsp1_rep	mRNA	13695392	13699818	.	-	.	ID=Os09t0394700-01;Name=Os09t0394700-01;Locus_id=Os09g0394700;Note=Similar to Lysophospholipase-like protein.;Transcript_evidence=AK243241 (DDBJ%2C Best hit);ORF_evidence=O49147 (UniProt);InterPro=Alpha/beta hydrolase fold-1 (IPR000073),Alpha/beta hydrolase%2C N-terminal (IPR022742);NIAS_FLcDNA=J100045P03;TENOR=Os09t0394700-01;KEGG=Os09t0394700-01
Chr09	irgsp1_rep	five_prime_UTR	13699773	13699818	.	-	.	Parent=Os09t0394700-01
Chr09	irgsp1_rep	CDS	13699360	13699772	.	-	0	Parent=Os09t0394700-01
Chr09	irgsp1_rep	CDS	13698295	13698333	.	-	1	Parent=Os09t0394700-01
Chr09	irgsp1_rep	CDS	13698146	13698216	.	-	1	Parent=Os09t0394700-01
Chr09	irgsp1_rep	CDS	13697258	13697322	.	-	2	Parent=Os09t0394700-01
Chr09	irgsp1_rep	CDS	13697080	13697172	.	-	0	Parent=Os09t0394700-01
Chr09	irgsp1_rep	CDS	13696871	13696963	.	-	0	Parent=Os09t0394700-01
Chr09	irgsp1_rep	CDS	13695663	13696082	.	-	0	Parent=Os09t0394700-01
Chr09	irgsp1_rep	three_prime_UTR	13695392	13695662	.	-	.	Parent=Os09t0394700-01
Chr09	irgsp1_rep	mRNA	13706541	13711508	.	+	.	ID=Os09t0394900-01;Name=Os09t0394900-01;Locus_id=Os09g0394900;CGSNL Gene Symbol=ANN9;CGSNL Gene Name=ANNEXIN 9;Oryzabase Gene Symbol Synonym(s)=OsANN9;Oryzabase Gene Name Synonym(s)=Annexin 9;Note=Similar to Annexin-like protein.;Transcript_evidence=AK061821 (DDBJ%2C Best hit),AK099102 (DDBJ%2C Best hit);ORF_evidence=B4FY63 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509),Molecular Function: calcium-dependent phospholipid binding (GO:0005544);InterPro=Annexin (IPR001464),Annexin%2C plant (IPR009118),Annexin repeat%2C conserved site (IPR018252),Annexin repeat (IPR018502);NIAS_FLcDNA=001-040-B11,J023033F23;Oryzabase=15472;TENOR=Os09t0394900-01
Chr09	irgsp1_rep	five_prime_UTR	13706541	13706647	.	+	.	Parent=Os09t0394900-01
Chr09	irgsp1_rep	CDS	13706648	13706723	.	+	0	Parent=Os09t0394900-01
Chr09	irgsp1_rep	CDS	13708244	13708387	.	+	2	Parent=Os09t0394900-01
Chr09	irgsp1_rep	CDS	13708619	13708839	.	+	2	Parent=Os09t0394900-01
Chr09	irgsp1_rep	CDS	13709337	13709552	.	+	0	Parent=Os09t0394900-01
Chr09	irgsp1_rep	CDS	13709640	13709729	.	+	0	Parent=Os09t0394900-01
Chr09	irgsp1_rep	CDS	13710958	13711158	.	+	0	Parent=Os09t0394900-01
Chr09	irgsp1_rep	three_prime_UTR	13711266	13711508	.	+	.	Parent=Os09t0394900-01
Chr09	irgsp1_rep	mRNA	13759598	13765052	.	+	.	ID=Os09t0395300-01;Name=Os09t0395300-01;Locus_id=Os09g0395300;RAP-DB Gene Symbol Synonym(s)=RL9%2C rl9%2C OsADD1;RAP-DB Gene Name Synonym(s)=ROLLED LEAF 9%2C anther dehiscence defected 1;CGSNL Gene Symbol=RL9;CGSNL Gene Name=ROLLED LEAF 9;Oryzabase Gene Symbol Synonym(s)=rl9%2C SLL1/RL9%2C SLL1%2C OsADD1%2C ADD1;Oryzabase Gene Name Synonym(s)=SHALLOT-LIKE1%2C SHALLOT-LIKE 1%2C ROLLED LEAF9%2C anther dehiscence defected 1;Note=GARP DNA-binding protien%2C GARP (Golden2%2C ARR-B and Psr1) transcription factor%2C Leaf polarity modeling%2C Regulation of anther dehiscence;Transcript_evidence=FJ268748 (Genbank);ORF_evidence=Q0J235 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT/Myb domain (IPR001005),Myb DNA-binding domain%2C plants (IPR006447),Homeodomain-like (IPR009057);Manual Curation=August 30%2C 2019;Literature_PMID=31420780,18594992;Oryzabase=8251;TENOR=Os09t0395300-00;KEGG=Os09t0395300-00;Subcellular location=nucleus (GO:0005634)
Chr09	irgsp1_rep	CDS	13759598	13760177	.	+	0	Parent=Os09t0395300-01
Chr09	irgsp1_rep	CDS	13760279	13760355	.	+	2	Parent=Os09t0395300-01
Chr09	irgsp1_rep	CDS	13760945	13760990	.	+	0	Parent=Os09t0395300-01
Chr09	irgsp1_rep	CDS	13761130	13761373	.	+	2	Parent=Os09t0395300-01
Chr09	irgsp1_rep	CDS	13764729	13764801	.	+	1	Parent=Os09t0395300-01
Chr09	irgsp1_rep	CDS	13764939	13765052	.	+	0	Parent=Os09t0395300-01
Chr09	irgsp1_rep	mRNA	13771248	13771892	.	-	.	ID=Os09t0395400-01;Name=Os09t0395400-01;Locus_id=Os09g0395400;Note=Hypothetical protein.;Transcript_evidence=AK109221 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-156-E05;Expression=AK109221;TENOR=Os09t0395400-01;KEGG=Os09t0395400-01
Chr09	irgsp1_rep	five_prime_UTR	13771658	13771892	.	-	.	Parent=Os09t0395400-01
Chr09	irgsp1_rep	CDS	13771382	13771657	.	-	0	Parent=Os09t0395400-01
Chr09	irgsp1_rep	three_prime_UTR	13771248	13771381	.	-	.	Parent=Os09t0395400-01
Chr09	irgsp1_rep	mRNA	13780708	13782437	.	-	.	ID=Os09t0395600-01;Name=Os09t0395600-01;Locus_id=Os09g0395600;Note=Concanavalin A-like lectin/glucanase domain containing protein.;Transcript_evidence=AK060495 (DDBJ%2C Best hit);ORF_evidence=NP_172925.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 16 (IPR000757),Concanavalin A-like lectin/glucanase (IPR008985),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320);NIAS_FLcDNA=001-016-E08;Expression=AK060495;TENOR=Os09t0395600-01;KEGG=Os09t0395600-01
Chr09	irgsp1_rep	five_prime_UTR	13782392	13782437	.	-	.	Parent=Os09t0395600-01
Chr09	irgsp1_rep	CDS	13782166	13782391	.	-	0	Parent=Os09t0395600-01
Chr09	irgsp1_rep	CDS	13781874	13781974	.	-	2	Parent=Os09t0395600-01
Chr09	irgsp1_rep	CDS	13781462	13781791	.	-	0	Parent=Os09t0395600-01
Chr09	irgsp1_rep	three_prime_UTR	13780708	13781461	.	-	.	Parent=Os09t0395600-01
Chr09	irgsp1_rep	mRNA	13780737	13782437	.	-	.	ID=Os09t0395600-02;Name=Os09t0395600-02;Locus_id=Os09g0395600;Note=Similar to Xyloglucan endotransglucosylase/hydrolase 13.;Transcript_evidence=AK122079 (DDBJ%2C Best hit);ORF_evidence=C0IRH2 (UniProt);NIAS_FLcDNA=J033119N05;Expression=AK122079;TENOR=Os09t0395600-02;KEGG=Os09t0395600-02
Chr09	irgsp1_rep	five_prime_UTR	13782392	13782437	.	-	.	Parent=Os09t0395600-02
Chr09	irgsp1_rep	CDS	13782158	13782391	.	-	0	Parent=Os09t0395600-02
Chr09	irgsp1_rep	three_prime_UTR	13781874	13782157	.	-	.	Parent=Os09t0395600-02
Chr09	irgsp1_rep	three_prime_UTR	13780737	13781791	.	-	.	Parent=Os09t0395600-02
Chr09	irgsp1_rep	mRNA	13813683	13816679	.	+	.	ID=Os09t0396300-01;Name=Os09t0396300-01;Locus_id=Os09g0396300;Note=Peptidase C15%2C pyroglutamyl peptidase I family protein.;Transcript_evidence=AK060069 (DDBJ%2C Best hit),AK105043 (DDBJ%2C Best hit);ORF_evidence=NP_001149461.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508);InterPro=Peptidase C15%2C pyroglutamyl peptidase I (IPR000816),Peptidase C15%2C pyroglutamyl peptidase I-like (IPR016125);NIAS_FLcDNA=006-305-H12,001-038-A05;Expression=AK060069;TENOR=Os09t0396300-01;KEGG=Os09t0396300-01
Chr09	irgsp1_rep	five_prime_UTR	13813683	13813869	.	+	.	Parent=Os09t0396300-01
Chr09	irgsp1_rep	five_prime_UTR	13814938	13814983	.	+	.	Parent=Os09t0396300-01
Chr09	irgsp1_rep	CDS	13814984	13815250	.	+	0	Parent=Os09t0396300-01
Chr09	irgsp1_rep	CDS	13815402	13815506	.	+	0	Parent=Os09t0396300-01
Chr09	irgsp1_rep	CDS	13815585	13815632	.	+	0	Parent=Os09t0396300-01
Chr09	irgsp1_rep	CDS	13816321	13816551	.	+	0	Parent=Os09t0396300-01
Chr09	irgsp1_rep	three_prime_UTR	13816552	13816679	.	+	.	Parent=Os09t0396300-01
Chr09	irgsp1_rep	mRNA	13831870	13833601	.	+	.	ID=Os09t0396900-01;Name=Os09t0396900-01;Locus_id=Os09g0396900;Oryzabase Gene Symbol Synonym(s)=OsVIT2%2C OsVIT1%2C VIT2%2C VIT1;Oryzabase Gene Name Synonym(s)=Vacuolar Iron Transporter 2%2C vacuolar Fe and Mn transporter 1;Note=Protein of unknown function DUF125%2C transmembrane family protein.;Transcript_evidence=AK071589 (DDBJ%2C Best hit);ORF_evidence=NP_001150466.1 (RefSeq);InterPro=Domain of unknown function DUF125%2C transmembrane (IPR008217);NIAS_FLcDNA=J023101O19;Oryzabase=11530;Expression=AK071589;TENOR=Os09t0396900-01;KEGG=Os09t0396900-01
Chr09	irgsp1_rep	five_prime_UTR	13831870	13832033	.	+	.	Parent=Os09t0396900-01
Chr09	irgsp1_rep	CDS	13832034	13832120	.	+	0	Parent=Os09t0396900-01
Chr09	irgsp1_rep	CDS	13832747	13832859	.	+	0	Parent=Os09t0396900-01
Chr09	irgsp1_rep	CDS	13833031	13833331	.	+	1	Parent=Os09t0396900-01
Chr09	irgsp1_rep	three_prime_UTR	13833332	13833601	.	+	.	Parent=Os09t0396900-01
Chr09	irgsp1_rep	mRNA	13831868	13833654	.	+	.	ID=Os09t0396900-02;Name=Os09t0396900-02;Locus_id=Os09g0396900;RAP-DB Gene Symbol Synonym(s)=OsVIT2;RAP-DB Gene Name Synonym(s)=Vacuolar Iron Transporter 2;Oryzabase Gene Symbol Synonym(s)=OsVIT2%2C OsVIT1%2C VIT2%2C VIT1;Oryzabase Gene Name Synonym(s)=Vacuolar Iron Transporter 2%2C vacuolar Fe and Mn transporter 1;Note=Vacuolar membrane transporter%2C Fe and Zn translocation between flag leaves and seeds;Transcript_evidence=Inferred from literature;ORF_evidence=Q6ERE5;InterPro=Ccc1 family (IPR008217);Manual Curation=March 5%2C 2015;Literature_PMID=22731699;Oryzabase=11530
Chr09	irgsp1_rep	five_prime_UTR	13831868	13832033	.	+	.	Parent=Os09t0396900-02
Chr09	irgsp1_rep	CDS	13832034	13832272	.	+	0	Parent=Os09t0396900-02
Chr09	irgsp1_rep	CDS	13832538	13832623	.	+	1	Parent=Os09t0396900-02
Chr09	irgsp1_rep	CDS	13832745	13832859	.	+	2	Parent=Os09t0396900-02
Chr09	irgsp1_rep	CDS	13833031	13833331	.	+	1	Parent=Os09t0396900-02
Chr09	irgsp1_rep	three_prime_UTR	13833332	13833654	.	+	.	Parent=Os09t0396900-02
Chr09	irgsp1_rep	mRNA	13850896	13854087	.	+	.	ID=Os09t0397100-01;Name=Os09t0397100-01;Locus_id=Os09g0397100;Note=Conserved hypothetical protein.;Transcript_evidence=AK243387 (DDBJ%2C Best hit);ORF_evidence=NP_001063102.1 (RefSeq);NIAS_FLcDNA=J100063H17;TENOR=Os09t0397100-01;KEGG=Os09t0397100-01
Chr09	irgsp1_rep	five_prime_UTR	13850896	13850970	.	+	.	Parent=Os09t0397100-01
Chr09	irgsp1_rep	CDS	13850971	13851162	.	+	0	Parent=Os09t0397100-01
Chr09	irgsp1_rep	CDS	13853427	13853641	.	+	0	Parent=Os09t0397100-01
Chr09	irgsp1_rep	CDS	13853720	13853807	.	+	1	Parent=Os09t0397100-01
Chr09	irgsp1_rep	three_prime_UTR	13853808	13854087	.	+	.	Parent=Os09t0397100-01
Chr09	irgsp1_rep	mRNA	13854921	13857310	.	+	.	ID=Os09t0397200-01;Name=Os09t0397200-01;Locus_id=Os09g0397200;Oryzabase Gene Symbol Synonym(s)=OsSTA226;Note=Conserved hypothetical protein.;Transcript_evidence=AK241559 (DDBJ%2C Best hit);ORF_evidence=NP_001063103.2 (RefSeq);NIAS_FLcDNA=J065178L07;Oryzabase=19498;TENOR=Os09t0397200-01;KEGG=Os09t0397200-01
Chr09	irgsp1_rep	five_prime_UTR	13854921	13855052	.	+	.	Parent=Os09t0397200-01
Chr09	irgsp1_rep	CDS	13855053	13855280	.	+	0	Parent=Os09t0397200-01
Chr09	irgsp1_rep	CDS	13855701	13855882	.	+	0	Parent=Os09t0397200-01
Chr09	irgsp1_rep	CDS	13855972	13856059	.	+	1	Parent=Os09t0397200-01
Chr09	irgsp1_rep	three_prime_UTR	13856060	13857310	.	+	.	Parent=Os09t0397200-01
Chr09	irgsp1_rep	mRNA	13875253	13879658	.	+	.	ID=Os09t0397300-01;Name=Os09t0397300-01;Locus_id=Os09g0397300;Note=HAD-superfamily hydrolase subfamily IIB protein.;Transcript_evidence=AK105382 (DDBJ%2C Best hit);ORF_evidence=NP_974105.1 (RefSeq);GO=Biological Process: trehalose biosynthetic process (GO:0005992),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Glycosyl transferase%2C family 20 (IPR001830),Trehalose-phosphatase (IPR003337),HAD-superfamily hydrolase%2C subfamily IIB (IPR006379),HAD-like domain (IPR023214);NIAS_FLcDNA=001-121-B06;Expression=AK105382;TENOR=Os09t0397300-01;KEGG=Os09t0397300-01
Chr09	irgsp1_rep	five_prime_UTR	13875253	13875998	.	+	.	Parent=Os09t0397300-01
Chr09	irgsp1_rep	CDS	13875999	13876024	.	+	0	Parent=Os09t0397300-01
Chr09	irgsp1_rep	CDS	13876082	13878055	.	+	1	Parent=Os09t0397300-01
Chr09	irgsp1_rep	CDS	13878197	13878470	.	+	1	Parent=Os09t0397300-01
Chr09	irgsp1_rep	CDS	13878567	13878893	.	+	0	Parent=Os09t0397300-01
Chr09	irgsp1_rep	three_prime_UTR	13878894	13879658	.	+	.	Parent=Os09t0397300-01
Chr09	irgsp1_rep	mRNA	13880665	13883828	.	-	.	ID=Os09t0397400-01;Name=Os09t0397400-01;Locus_id=Os09g0397400;Oryzabase Gene Symbol Synonym(s)=OsTBL36%2C TBL36;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 36;Note=Protein of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=AK063997 (DDBJ%2C Best hit);ORF_evidence=Q6ERD8 (UniProt);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=001-124-F01;Oryzabase=21491;Expression=AK063997;TENOR=Os09t0397400-01;KEGG=Os09t0397400-01
Chr09	irgsp1_rep	five_prime_UTR	13883696	13883828	.	-	.	Parent=Os09t0397400-01
Chr09	irgsp1_rep	five_prime_UTR	13882875	13882982	.	-	.	Parent=Os09t0397400-01
Chr09	irgsp1_rep	CDS	13882718	13882874	.	-	0	Parent=Os09t0397400-01
Chr09	irgsp1_rep	CDS	13882558	13882617	.	-	2	Parent=Os09t0397400-01
Chr09	irgsp1_rep	CDS	13882151	13882346	.	-	2	Parent=Os09t0397400-01
Chr09	irgsp1_rep	CDS	13881238	13882072	.	-	1	Parent=Os09t0397400-01
Chr09	irgsp1_rep	three_prime_UTR	13880665	13881237	.	-	.	Parent=Os09t0397400-01
Chr09	irgsp1_rep	mRNA	13889331	13890112	.	-	.	ID=Os09t0397700-01;Name=Os09t0397700-01;Locus_id=Os09g0397700;Note=Glutathione-dependent formaldehyde-activating%2C GFA family protein.;Transcript_evidence=AK111009 (DDBJ%2C Best hit);ORF_evidence=B6T550 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: carbon-sulfur lyase activity (GO:0016846);InterPro=Glutathione-dependent formaldehyde-activating family%2C GFA (IPR006913),Mss4-like (IPR011057);NIAS_FLcDNA=002-174-F08;Expression=AK111009;TENOR=Os09t0397700-01;KEGG=Os09t0397700-01
Chr09	irgsp1_rep	five_prime_UTR	13890067	13890112	.	-	.	Parent=Os09t0397700-01
Chr09	irgsp1_rep	CDS	13889617	13890066	.	-	0	Parent=Os09t0397700-01
Chr09	irgsp1_rep	three_prime_UTR	13889331	13889616	.	-	.	Parent=Os09t0397700-01
Chr09	irgsp1_rep	mRNA	13887404	13890094	.	-	.	ID=Os09t0397700-02;Name=Os09t0397700-02;Locus_id=Os09g0397700;Note=Glutathione-dependent formaldehyde-activating%2C GFA family protein.;Transcript_evidence=AK108004 (DDBJ%2C Best hit);ORF_evidence=B6T550 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: carbon-sulfur lyase activity (GO:0016846);InterPro=Glutathione-dependent formaldehyde-activating family%2C GFA (IPR006913),Mss4-like (IPR011057);NIAS_FLcDNA=002-135-G09;Expression=AK108004;TENOR=Os09t0397700-02;KEGG=Os09t0397700-02
Chr09	irgsp1_rep	five_prime_UTR	13890067	13890094	.	-	.	Parent=Os09t0397700-02
Chr09	irgsp1_rep	CDS	13889617	13890066	.	-	0	Parent=Os09t0397700-02
Chr09	irgsp1_rep	three_prime_UTR	13889592	13889616	.	-	.	Parent=Os09t0397700-02
Chr09	irgsp1_rep	three_prime_UTR	13887404	13887675	.	-	.	Parent=Os09t0397700-02
Chr09	irgsp1_rep	mRNA	13888829	13889235	.	+	.	ID=Os09t0397800-01;Name=Os09t0397800-01;Locus_id=Os09g0397800;Note=Hypothetical gene.;Transcript_evidence=AK062361 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-101-H05;Expression=AK062361;TENOR=Os09t0397800-01;KEGG=Os09t0397800-01
Chr09	irgsp1_rep	CDS	13888829	13889125	.	+	0	Parent=Os09t0397800-01
Chr09	irgsp1_rep	three_prime_UTR	13889126	13889235	.	+	.	Parent=Os09t0397800-01
Chr09	irgsp1_rep	mRNA	13891822	13897252	.	+	.	ID=Os09t0397900-01;Name=Os09t0397900-01;Locus_id=Os09g0397900;Note=Similar to FEG protein.;Transcript_evidence=AK101306 (DDBJ%2C Best hit);ORF_evidence=Q6E435 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Beta-lactamase-like (IPR001279),RNA-metabolising metallo-beta-lactamase (IPR011108),Beta-Casp domain (IPR022712);NIAS_FLcDNA=J033033M06;Expression=AK101306;TENOR=Os09t0397900-01;KEGG=Os09t0397900-01 (EC:3.1.27.-)
Chr09	irgsp1_rep	five_prime_UTR	13891822	13891907	.	+	.	Parent=Os09t0397900-01
Chr09	irgsp1_rep	CDS	13891908	13891932	.	+	0	Parent=Os09t0397900-01
Chr09	irgsp1_rep	CDS	13892015	13892201	.	+	2	Parent=Os09t0397900-01
Chr09	irgsp1_rep	CDS	13892306	13892378	.	+	1	Parent=Os09t0397900-01
Chr09	irgsp1_rep	CDS	13892815	13892932	.	+	0	Parent=Os09t0397900-01
Chr09	irgsp1_rep	CDS	13893050	13893123	.	+	2	Parent=Os09t0397900-01
Chr09	irgsp1_rep	CDS	13893245	13893381	.	+	0	Parent=Os09t0397900-01
Chr09	irgsp1_rep	CDS	13893913	13893976	.	+	1	Parent=Os09t0397900-01
Chr09	irgsp1_rep	CDS	13894344	13894409	.	+	0	Parent=Os09t0397900-01
Chr09	irgsp1_rep	CDS	13894712	13894781	.	+	0	Parent=Os09t0397900-01
Chr09	irgsp1_rep	CDS	13894857	13894961	.	+	2	Parent=Os09t0397900-01
Chr09	irgsp1_rep	CDS	13895491	13895632	.	+	2	Parent=Os09t0397900-01
Chr09	irgsp1_rep	CDS	13895994	13896090	.	+	1	Parent=Os09t0397900-01
Chr09	irgsp1_rep	CDS	13896590	13897111	.	+	0	Parent=Os09t0397900-01
Chr09	irgsp1_rep	three_prime_UTR	13897112	13897252	.	+	.	Parent=Os09t0397900-01
Chr09	irgsp1_rep	mRNA	13891996	13897046	.	-	.	ID=Os09t0397950-00;Name=Os09t0397950-00;Locus_id=Os09g0397950;Note=Hypothetical protein.;Transcript_evidence=tplb0030m03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0397950-00
Chr09	irgsp1_rep	five_prime_UTR	13897034	13897046	.	-	.	Parent=Os09t0397950-00
Chr09	irgsp1_rep	CDS	13896674	13897033	.	-	0	Parent=Os09t0397950-00
Chr09	irgsp1_rep	three_prime_UTR	13896600	13896673	.	-	.	Parent=Os09t0397950-00
Chr09	irgsp1_rep	three_prime_UTR	13895975	13896099	.	-	.	Parent=Os09t0397950-00
Chr09	irgsp1_rep	three_prime_UTR	13895499	13895615	.	-	.	Parent=Os09t0397950-00
Chr09	irgsp1_rep	three_prime_UTR	13894864	13894968	.	-	.	Parent=Os09t0397950-00
Chr09	irgsp1_rep	three_prime_UTR	13894725	13894789	.	-	.	Parent=Os09t0397950-00
Chr09	irgsp1_rep	three_prime_UTR	13894343	13894424	.	-	.	Parent=Os09t0397950-00
Chr09	irgsp1_rep	three_prime_UTR	13893919	13893975	.	-	.	Parent=Os09t0397950-00
Chr09	irgsp1_rep	three_prime_UTR	13893238	13893386	.	-	.	Parent=Os09t0397950-00
Chr09	irgsp1_rep	three_prime_UTR	13893056	13893115	.	-	.	Parent=Os09t0397950-00
Chr09	irgsp1_rep	three_prime_UTR	13892814	13892941	.	-	.	Parent=Os09t0397950-00
Chr09	irgsp1_rep	three_prime_UTR	13892306	13892377	.	-	.	Parent=Os09t0397950-00
Chr09	irgsp1_rep	three_prime_UTR	13891996	13892201	.	-	.	Parent=Os09t0397950-00
Chr09	irgsp1_rep	mRNA	13904871	13906277	.	-	.	ID=Os09t0398200-01;Name=Os09t0398200-01;Locus_id=Os09g0398200;Note=Hypothetical conserved gene.;Transcript_evidence=AK108754 (DDBJ%2C Best hit);ORF_evidence=B9G3F8 (UniProt);NIAS_FLcDNA=002-150-F10;Expression=AK108754;TENOR=Os09t0398200-01;KEGG=Os09t0398200-01
Chr09	irgsp1_rep	five_prime_UTR	13905172	13906277	.	-	.	Parent=Os09t0398200-01
Chr09	irgsp1_rep	CDS	13905004	13905171	.	-	0	Parent=Os09t0398200-01
Chr09	irgsp1_rep	three_prime_UTR	13904871	13905003	.	-	.	Parent=Os09t0398200-01
Chr09	irgsp1_rep	mRNA	13907885	13909784	.	-	.	ID=Os09t0398300-01;Name=Os09t0398300-01;Locus_id=Os09g0398300;Note=Hypothetical protein.;Transcript_evidence=AK102386 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033092D13;Expression=AK102386;TENOR=Os09t0398300-01;KEGG=Os09t0398300-01
Chr09	irgsp1_rep	five_prime_UTR	13909037	13909784	.	-	.	Parent=Os09t0398300-01
Chr09	irgsp1_rep	CDS	13908368	13909036	.	-	0	Parent=Os09t0398300-01
Chr09	irgsp1_rep	three_prime_UTR	13907885	13908367	.	-	.	Parent=Os09t0398300-01
Chr09	irgsp1_rep	mRNA	13972159	13975791	.	+	.	ID=Os09t0399502-01;Name=Os09t0399502-01;Locus_id=Os09g0399502;Note=Hypothetical conserved gene.;Transcript_evidence=AK288474 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090038A02;TENOR=Os09t0399502-01;KEGG=Os09t0399502-01
Chr09	irgsp1_rep	five_prime_UTR	13972159	13974043	.	+	.	Parent=Os09t0399502-01
Chr09	irgsp1_rep	CDS	13974044	13974307	.	+	0	Parent=Os09t0399502-01
Chr09	irgsp1_rep	three_prime_UTR	13974308	13975791	.	+	.	Parent=Os09t0399502-01
Chr09	irgsp1_rep	mRNA	13982981	13984584	.	-	.	ID=Os09t0399800-01;Name=Os09t0399800-01;Locus_id=Os09g0399800;CGSNL Gene Symbol=CAD8A;CGSNL Gene Name=CINNAMYL ALCOHOL DEHYDROGENASE 8A;Oryzabase Gene Symbol Synonym(s)=OsCAD8A;Oryzabase Gene Name Synonym(s)=Cinnamyl alcohol dehydrogenase 8A;Note=Cinnamyl alcohol dehydrogenase (EC 1.1.1.195).;Transcript_evidence=AK059858 (DDBJ%2C Best hit);ORF_evidence=Q8S412 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),Alcohol dehydrogenase%2C zinc-type%2C conserved site (IPR002328),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040),Polyketide synthase%2C enoylreductase (IPR020843);NIAS_FLcDNA=006-207-B03;Oryzabase=10436;Expression=AK059858;TENOR=Os09t0399800-01;KEGG=Os09t0399800-01 (EC:1.1.1.195)
Chr09	irgsp1_rep	five_prime_UTR	13984470	13984584	.	-	.	Parent=Os09t0399800-01
Chr09	irgsp1_rep	CDS	13984387	13984469	.	-	0	Parent=Os09t0399800-01
Chr09	irgsp1_rep	CDS	13983193	13984189	.	-	1	Parent=Os09t0399800-01
Chr09	irgsp1_rep	three_prime_UTR	13982981	13983192	.	-	.	Parent=Os09t0399800-01
Chr09	irgsp1_rep	mRNA	13987065	13988779	.	-	.	ID=Os09t0400000-00;Name=Os09t0400000-00;Locus_id=Os09g0400000;CGSNL Gene Symbol=CAD8B;CGSNL Gene Name=CINNAMYL ALCOHOL DEHYDROGENASE 8B;Oryzabase Gene Symbol Synonym(s)=OsCAD8B;Oryzabase Gene Name Synonym(s)=Cinnamyl alcohol dehydrogenase 8B;Note=Cinnamyl alcohol dehydrogenase (EC 1.1.1.195).;Transcript_evidence=Q6ERW9 (UniProt);ORF_evidence=Q6ERW9 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),Alcohol dehydrogenase%2C zinc-type%2C conserved site (IPR002328),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040),Polyketide synthase%2C enoylreductase (IPR020843);Oryzabase=10437;TENOR=Os09t0400000-00
Chr09	irgsp1_rep	CDS	13988472	13988779	.	-	0	Parent=Os09t0400000-00
Chr09	irgsp1_rep	CDS	13987065	13988067	.	-	1	Parent=Os09t0400000-00
Chr09	irgsp1_rep	mRNA	13987066	13988149	.	+	.	ID=Os09t0400100-01;Name=Os09t0400100-01;Locus_id=Os09g0400100;Note=Similar to Cinnamyl alcohol dehydrogenase (EC 1.1.1.195).;Transcript_evidence=AK108849 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-152-A05;Expression=AK108849;TENOR=Os09t0400100-01;KEGG=Os09t0400100-01 (EC:1.1.1.195)
Chr09	irgsp1_rep	five_prime_UTR	13987066	13987230	.	+	.	Parent=Os09t0400100-01
Chr09	irgsp1_rep	CDS	13987231	13987725	.	+	0	Parent=Os09t0400100-01
Chr09	irgsp1_rep	three_prime_UTR	13987726	13988149	.	+	.	Parent=Os09t0400100-01
Chr09	irgsp1_rep	mRNA	13994443	13996457	.	-	.	ID=Os09t0400200-01;Name=Os09t0400200-01;Locus_id=Os09g0400200;Note=Similar to Cinnamyl alcohol dehydrogenase (EC 1.1.1.195).;Transcript_evidence=AK072000 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013094F14;Expression=AK072000;TENOR=Os09t0400200-01;KEGG=Os09t0400200-01 (EC:1.1.1.195)
Chr09	irgsp1_rep	five_prime_UTR	13996248	13996457	.	-	.	Parent=Os09t0400200-01
Chr09	irgsp1_rep	CDS	13995705	13996247	.	-	0	Parent=Os09t0400200-01
Chr09	irgsp1_rep	three_prime_UTR	13994443	13995704	.	-	.	Parent=Os09t0400200-01
Chr09	irgsp1_rep	mRNA	13994666	13996577	.	+	.	ID=Os09t0400300-01;Name=Os09t0400300-01;Locus_id=Os09g0400300;CGSNL Gene Symbol=CAD8C;CGSNL Gene Name=CINNAMYL ALCOHOL DEHYDROGENASE 8C;Oryzabase Gene Symbol Synonym(s)=OsCAD8C%2C CAD8c;Oryzabase Gene Name Synonym(s)=Cinnamyl alcohol dehydrogenase 8C;Note=Similar to Cinnamyl alcohol dehydrogenase (EC 1.1.1.195).;Transcript_evidence=AK067085 (DDBJ%2C Best hit);ORF_evidence=Q2HZE4 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),Alcohol dehydrogenase%2C zinc-type%2C conserved site (IPR002328),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040),Polyketide synthase%2C enoylreductase (IPR020843);NIAS_FLcDNA=J013096I15;Oryzabase=10438;Expression=AK067085;TENOR=Os09t0400300-01;KEGG=Os09t0400300-01 (EC:1.1.1.195)
Chr09	irgsp1_rep	five_prime_UTR	13994666	13995318	.	+	.	Parent=Os09t0400300-01
Chr09	irgsp1_rep	CDS	13995319	13996365	.	+	0	Parent=Os09t0400300-01
Chr09	irgsp1_rep	three_prime_UTR	13996366	13996577	.	+	.	Parent=Os09t0400300-01
Chr09	irgsp1_rep	mRNA	13997041	13997453	.	+	.	ID=Os09t0400350-00;Name=Os09t0400350-00;Locus_id=Os09g0400350;Note=Conserved hypothetical protein.;Transcript_evidence=EU947353 (DDBJ);ORF_evidence=NP_001173247.1 (RefSeq);TENOR=Os09t0400350-00
Chr09	irgsp1_rep	CDS	13997041	13997433	.	+	0	Parent=Os09t0400350-00
Chr09	irgsp1_rep	three_prime_UTR	13997434	13997453	.	+	.	Parent=Os09t0400350-00
Chr09	irgsp1_rep	mRNA	14001271	14002927	.	+	.	ID=Os09t0400400-01;Name=Os09t0400400-01;Locus_id=Os09g0400400;CGSNL Gene Symbol=CAD8D;CGSNL Gene Name=CINNAMYL ALCOHOL DEHYDROGENASE 8D;Oryzabase Gene Symbol Synonym(s)=OsCAD8D;Oryzabase Gene Name Synonym(s)=Cinnamyl alcohol dehydrogenase 8D;Note=Cinnamyl alcohol dehydrogenase (EC 1.1.1.195).;Transcript_evidence=AK243022 (DDBJ%2C Best hit);ORF_evidence=Q8S412 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),Alcohol dehydrogenase%2C zinc-type%2C conserved site (IPR002328),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040),Polyketide synthase%2C enoylreductase (IPR020843);NIAS_FLcDNA=J100001E20;Oryzabase=10439;TENOR=Os09t0400400-01;KEGG=Os09t0400400-01 (EC:1.1.1.195)
Chr09	irgsp1_rep	five_prime_UTR	14001271	14001342	.	+	.	Parent=Os09t0400400-01
Chr09	irgsp1_rep	CDS	14001343	14001425	.	+	0	Parent=Os09t0400400-01
Chr09	irgsp1_rep	CDS	14001658	14002663	.	+	1	Parent=Os09t0400400-01
Chr09	irgsp1_rep	three_prime_UTR	14002664	14002927	.	+	.	Parent=Os09t0400400-01
Chr09	irgsp1_rep	mRNA	14007882	14009971	.	-	.	ID=Os09t0400500-01;Name=Os09t0400500-01;Locus_id=Os09g0400500;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK243495 (DDBJ%2C Best hit);ORF_evidence=NP_001147470.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J100074D03;TENOR=Os09t0400500-01;KEGG=Os09t0400500-01
Chr09	irgsp1_rep	five_prime_UTR	14009921	14009971	.	-	.	Parent=Os09t0400500-01
Chr09	irgsp1_rep	CDS	14007974	14009920	.	-	0	Parent=Os09t0400500-01
Chr09	irgsp1_rep	three_prime_UTR	14007882	14007973	.	-	.	Parent=Os09t0400500-01
Chr09	irgsp1_rep	mRNA	14019898	14021822	.	-	.	ID=Os09t0400600-01;Name=Os09t0400600-01;Locus_id=Os09g0400600;Note=Hypothetical protein.;Transcript_evidence=AK106327 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-101-F03;TENOR=Os09t0400600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	14021544	14021822	.	-	.	Parent=Os09t0400600-01
Chr09	irgsp1_rep	CDS	14021357	14021543	.	-	0	Parent=Os09t0400600-01
Chr09	irgsp1_rep	CDS	14021096	14021247	.	-	2	Parent=Os09t0400600-01
Chr09	irgsp1_rep	three_prime_UTR	14021077	14021095	.	-	.	Parent=Os09t0400600-01
Chr09	irgsp1_rep	three_prime_UTR	14020758	14020848	.	-	.	Parent=Os09t0400600-01
Chr09	irgsp1_rep	three_prime_UTR	14019898	14020674	.	-	.	Parent=Os09t0400600-01
Chr09	irgsp1_rep	mRNA	14020195	14020799	.	+	.	ID=Os09t0400700-01;Name=Os09t0400700-01;Locus_id=Os09g0400700;Note=Conserved hypothetical protein.;Transcript_evidence=AK062784 (DDBJ%2C Best hit);ORF_evidence=B8BF57 (UniProt);NIAS_FLcDNA=001-107-B06;TENOR=Os09t0400700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	14020195	14020263	.	+	.	Parent=Os09t0400700-01
Chr09	irgsp1_rep	CDS	14020264	14020341	.	+	0	Parent=Os09t0400700-01
Chr09	irgsp1_rep	CDS	14020450	14020560	.	+	0	Parent=Os09t0400700-01
Chr09	irgsp1_rep	three_prime_UTR	14020561	14020799	.	+	.	Parent=Os09t0400700-01
Chr09	irgsp1_rep	mRNA	14022579	14025907	.	+	.	ID=Os09t0400900-00;Name=Os09t0400900-00;Locus_id=Os09g0400900;Note=Conserved hypothetical protein.;Transcript_evidence=CT835841 (DDBJ%2C Best hit);ORF_evidence=Q6ERV5 (UniProt);TENOR=Os09t0400900-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	14022579	14022795	.	+	.	Parent=Os09t0400900-00
Chr09	irgsp1_rep	five_prime_UTR	14025298	14025469	.	+	.	Parent=Os09t0400900-00
Chr09	irgsp1_rep	CDS	14025470	14025595	.	+	0	Parent=Os09t0400900-00
Chr09	irgsp1_rep	three_prime_UTR	14025596	14025907	.	+	.	Parent=Os09t0400900-00
Chr09	irgsp1_rep	mRNA	14029432	14030989	.	+	.	ID=Os09t0401000-01;Name=Os09t0401000-01;Locus_id=Os09g0401000;Oryzabase Gene Symbol Synonym(s)=OsMyb10;Oryzabase Gene Name Synonym(s)=myb transcription factor 10%2C transcription factor MYB10;Note=Myb factor.;Transcript_evidence=AK064679 (DDBJ%2C Best hit);ORF_evidence=O04110 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=002-115-H05;Oryzabase=10254;Expression=AK064679;TENOR=Os09t0401000-01;KEGG=Os09t0401000-01
Chr09	irgsp1_rep	five_prime_UTR	14029432	14029580	.	+	.	Parent=Os09t0401000-01
Chr09	irgsp1_rep	CDS	14029581	14029713	.	+	0	Parent=Os09t0401000-01
Chr09	irgsp1_rep	CDS	14029807	14029936	.	+	2	Parent=Os09t0401000-01
Chr09	irgsp1_rep	CDS	14030013	14030589	.	+	1	Parent=Os09t0401000-01
Chr09	irgsp1_rep	three_prime_UTR	14030590	14030989	.	+	.	Parent=Os09t0401000-01
Chr09	irgsp1_rep	mRNA	14030010	14030523	.	-	.	ID=Os09t0401050-00;Name=Os09t0401050-00;Locus_id=Os09g0401050;Note=Hypothetical protein.;Transcript_evidence=EU971393 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0401050-00
Chr09	irgsp1_rep	CDS	14030010	14030523	.	-	0	Parent=Os09t0401050-00
Chr09	irgsp1_rep	mRNA	14046728	14050594	.	+	.	ID=Os09t0401100-01;Name=Os09t0401100-01;Locus_id=Os09g0401100;RAP-DB Gene Symbol Synonym(s)=ABCG21%2C OsABCG21%2C STR1;RAP-DB Gene Name Synonym(s)=ABC TRANSPORTER G FAMILY MEMBER 21%2C ABC transporter superfamily ABCG subgroup member 21%2C Medicago truncatula stunted arbuscule 1;CGSNL Gene Symbol=ABCG21;CGSNL Gene Name=ABC TRANSPORTER G FAMILY MEMBER 21;Oryzabase Gene Symbol Synonym(s)=OsABCG21%2C STR1;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 21%2C Medicago truncatula stunted arbuscule 1;Note=Half-size ABC transporter%2C Mycorrhizal arbuscule formation;Transcript_evidence=JN608807;ORF_evidence=G9I8W9;GO=Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Cellular Component: membrane (GO:0016020);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),ABC transporter-like (IPR003439),AAA+ ATPase domain (IPR003593),ABC-2 type transporter (IPR013525),ABC transporter%2C conserved site (IPR017871);Manual Curation=March 17%2C 2015;Literature_PMID=22077667;Oryzabase=11998;TENOR=Os09t0401100-00
Chr09	irgsp1_rep	five_prime_UTR	14046728	14046753	.	+	.	Parent=Os09t0401100-01
Chr09	irgsp1_rep	CDS	14046754	14047275	.	+	0	Parent=Os09t0401100-01
Chr09	irgsp1_rep	CDS	14047652	14047831	.	+	0	Parent=Os09t0401100-01
Chr09	irgsp1_rep	CDS	14048074	14048342	.	+	0	Parent=Os09t0401100-01
Chr09	irgsp1_rep	CDS	14048771	14050424	.	+	1	Parent=Os09t0401100-01
Chr09	irgsp1_rep	three_prime_UTR	14050425	14050594	.	+	.	Parent=Os09t0401100-01
Chr09	irgsp1_rep	mRNA	14050930	14053566	.	-	.	ID=Os09t0401200-01;Name=Os09t0401200-01;Locus_id=Os09g0401200;CGSNL Gene Symbol=TRXH3;CGSNL Gene Name=THIOREDOXIN H-TYPE 3;Oryzabase Gene Symbol Synonym(s)=OsTRXh3%2C OsTrx26%2C Trx26%2C antiSTR1%2C OsTDX%2C TDX;Oryzabase Gene Name Synonym(s)=Thioredoxin H-type 3%2C H-type Thioredoxin 3%2C Thioredoxin 26%2C Tetratricopeptide Domain-containing thioredoxin;Note=Similar to tetraticopeptide domain-containing thioredoxin.;Transcript_evidence=AK063980 (DDBJ%2C Best hit);ORF_evidence=Q6ES52;GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide TPR-1 (IPR001440),Tetratricopeptide-like helical (IPR011990),Thioredoxin-like fold (IPR012336),Tetratricopeptide repeat-containing (IPR013026),Thioredoxin domain (IPR013766),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=001-124-D03;Oryzabase=9906;TENOR=Os09t0401200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	14053565	14053566	.	-	.	Parent=Os09t0401200-01
Chr09	irgsp1_rep	CDS	14053409	14053564	.	-	0	Parent=Os09t0401200-01
Chr09	irgsp1_rep	CDS	14053011	14053124	.	-	0	Parent=Os09t0401200-01
Chr09	irgsp1_rep	CDS	14052820	14052908	.	-	0	Parent=Os09t0401200-01
Chr09	irgsp1_rep	CDS	14052594	14052673	.	-	1	Parent=Os09t0401200-01
Chr09	irgsp1_rep	CDS	14052438	14052502	.	-	2	Parent=Os09t0401200-01
Chr09	irgsp1_rep	CDS	14052197	14052337	.	-	0	Parent=Os09t0401200-01
Chr09	irgsp1_rep	CDS	14051958	14052071	.	-	0	Parent=Os09t0401200-01
Chr09	irgsp1_rep	CDS	14051698	14051728	.	-	0	Parent=Os09t0401200-01
Chr09	irgsp1_rep	CDS	14051156	14051487	.	-	2	Parent=Os09t0401200-01
Chr09	irgsp1_rep	three_prime_UTR	14050930	14051155	.	-	.	Parent=Os09t0401200-01
Chr09	irgsp1_rep	mRNA	14048689	14051283	.	-	.	ID=Os09t0401200-02;Name=Os09t0401200-02;Locus_id=Os09g0401200;RAP-DB Gene Symbol Synonym(s)=TRXH3%2C antiSTR1;RAP-DB Gene Name Synonym(s)=THIOREDOXIN H-TYPE 3;CGSNL Gene Symbol=TRXH3;CGSNL Gene Name=THIOREDOXIN H-TYPE 3;Oryzabase Gene Symbol Synonym(s)=OsTRXh3%2C OsTrx26%2C Trx26%2C antiSTR1%2C OsTDX%2C TDX;Oryzabase Gene Name Synonym(s)=Thioredoxin H-type 3%2C H-type Thioredoxin 3%2C Thioredoxin 26%2C Tetratricopeptide Domain-containing thioredoxin;Note=Natural antisense transcript (cis-NAT) of STR1%2C Mycorrhizal arbuscule formation;Transcript_evidence=AK106846;ORF_evidence=NONE;NIAS_FLcDNA=002-118-A03;Manual Curation=March 18%2C 2015;Literature_PMID=22077667;Oryzabase=9906;TENOR=Os09t0401200-02;KEGG=Os09t0401200-02
Chr09	irgsp1_rep	five_prime_UTR	14051153	14051283	.	-	.	Parent=Os09t0401200-02
Chr09	irgsp1_rep	five_prime_UTR	14049510	14050399	.	-	.	Parent=Os09t0401200-02
Chr09	irgsp1_rep	CDS	14049222	14049509	.	-	0	Parent=Os09t0401200-02
Chr09	irgsp1_rep	three_prime_UTR	14048689	14049221	.	-	.	Parent=Os09t0401200-02
Chr09	irgsp1_rep	mRNA	14056130	14060316	.	-	.	ID=Os09t0401300-01;Name=Os09t0401300-01;Locus_id=Os09g0401300;RAP-DB Gene Symbol Synonym(s)=OsJAZ4;RAP-DB Gene Name Synonym(s)=Jasmonate ZIM-domain protein 4;CGSNL Gene Symbol=TIFY6B;CGSNL Gene Name=TIFY GENE 6B;Oryzabase Gene Symbol Synonym(s)=OsJAZ8%2C JAZ8%2C OsJAZ 4%2C OsJAZ4%2C JAZ4%2C OsTIFY6b;Oryzabase Gene Name Synonym(s)=Jasmonate ZIM-domain protein 8%2C Jasmonate ZIM-domain protein 4.;Note=A member of the JASMONATE ZIM-domain (JAZ) family%2C Negative modulation of JA signaling and antiviral defense;Transcript_evidence=AK065170;ORF_evidence=Q6ES51;InterPro=Tify domain (IPR010399),CO/COL/TOC1%2C conserved site (IPR018467);NIAS_FLcDNA=J013002C19;Manual Curation=June 30%2C 2020;Literature_PMID=32586913;Oryzabase=9494;Expression=AK065170;TENOR=Os09t0401300-01;KEGG=Os09t0401300-01;Subcellular location=cytoplasm (GO:0005737), nucleus (GO:0005634)
Chr09	irgsp1_rep	five_prime_UTR	14060146	14060316	.	-	.	Parent=Os09t0401300-01
Chr09	irgsp1_rep	CDS	14060070	14060145	.	-	0	Parent=Os09t0401300-01
Chr09	irgsp1_rep	CDS	14059363	14059565	.	-	2	Parent=Os09t0401300-01
Chr09	irgsp1_rep	CDS	14058971	14059242	.	-	0	Parent=Os09t0401300-01
Chr09	irgsp1_rep	CDS	14058780	14058864	.	-	1	Parent=Os09t0401300-01
Chr09	irgsp1_rep	CDS	14058322	14058682	.	-	0	Parent=Os09t0401300-01
Chr09	irgsp1_rep	CDS	14058155	14058212	.	-	2	Parent=Os09t0401300-01
Chr09	irgsp1_rep	CDS	14056503	14056698	.	-	1	Parent=Os09t0401300-01
Chr09	irgsp1_rep	three_prime_UTR	14056130	14056502	.	-	.	Parent=Os09t0401300-01
Chr09	irgsp1_rep	mRNA	14056118	14059595	.	-	.	ID=Os09t0401300-02;Name=Os09t0401300-02;Locus_id=Os09g0401300;CGSNL Gene Symbol=TIFY6B;CGSNL Gene Name=TIFY GENE 6B;Oryzabase Gene Symbol Synonym(s)=OsJAZ8%2C JAZ8%2C OsJAZ 4%2C OsJAZ4%2C JAZ4%2C OsTIFY6b;Oryzabase Gene Name Synonym(s)=Jasmonate ZIM-domain protein 8%2C Jasmonate ZIM-domain protein 4.;Note=Similar to ZIM motif family protein.;Transcript_evidence=AK071001 (DDBJ%2C Best hit);ORF_evidence=NP_001151534.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Tify (IPR010399),CO/COL/TOC1%2C conserved site (IPR018467);NIAS_FLcDNA=J023075J15;Oryzabase=9494;Expression=AK071001;TENOR=Os09t0401300-02;KEGG=Os09t0401300-02
Chr09	irgsp1_rep	CDS	14059538	14059595	.	-	0	Parent=Os09t0401300-02
Chr09	irgsp1_rep	CDS	14059367	14059470	.	-	2	Parent=Os09t0401300-02
Chr09	irgsp1_rep	CDS	14058971	14059164	.	-	0	Parent=Os09t0401300-02
Chr09	irgsp1_rep	CDS	14058780	14058864	.	-	1	Parent=Os09t0401300-02
Chr09	irgsp1_rep	CDS	14058322	14058682	.	-	0	Parent=Os09t0401300-02
Chr09	irgsp1_rep	CDS	14058155	14058212	.	-	2	Parent=Os09t0401300-02
Chr09	irgsp1_rep	CDS	14056503	14056698	.	-	1	Parent=Os09t0401300-02
Chr09	irgsp1_rep	three_prime_UTR	14056118	14056502	.	-	.	Parent=Os09t0401300-02
Chr09	irgsp1_rep	mRNA	14057996	14059093	.	-	.	ID=Os09t0401300-03;Name=Os09t0401300-03;Locus_id=Os09g0401300;CGSNL Gene Symbol=TIFY6B;CGSNL Gene Name=TIFY GENE 6B;Oryzabase Gene Symbol Synonym(s)=OsJAZ8%2C JAZ8%2C OsJAZ 4%2C OsJAZ4%2C JAZ4%2C OsTIFY6b;Oryzabase Gene Name Synonym(s)=Jasmonate ZIM-domain protein 8%2C Jasmonate ZIM-domain protein 4.;Note=Similar to ZIM motif family protein.;Transcript_evidence=AK059728 (DDBJ%2C Best hit);ORF_evidence=NP_001151534.1 (RefSeq);NIAS_FLcDNA=006-201-D12;Oryzabase=9494;TENOR=Os09t0401300-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	14058809	14059093	.	-	.	Parent=Os09t0401300-03
Chr09	irgsp1_rep	CDS	14058059	14058808	.	-	0	Parent=Os09t0401300-03
Chr09	irgsp1_rep	three_prime_UTR	14057996	14058058	.	-	.	Parent=Os09t0401300-03
Chr09	irgsp1_rep	mRNA	14083895	14087562	.	+	.	ID=Os09t0401550-01;Name=Os09t0401550-01;Locus_id=Os09g0401550;Note=Hypothetical gene.;Transcript_evidence=AK287791 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065173I21;TENOR=Os09t0401550-01;KEGG=Os09t0401550-01
Chr09	irgsp1_rep	five_prime_UTR	14083895	14084461	.	+	.	Parent=Os09t0401550-01
Chr09	irgsp1_rep	five_prime_UTR	14085555	14085833	.	+	.	Parent=Os09t0401550-01
Chr09	irgsp1_rep	five_prime_UTR	14086707	14086836	.	+	.	Parent=Os09t0401550-01
Chr09	irgsp1_rep	CDS	14086837	14087088	.	+	0	Parent=Os09t0401550-01
Chr09	irgsp1_rep	three_prime_UTR	14087089	14087562	.	+	.	Parent=Os09t0401550-01
Chr09	irgsp1_rep	mRNA	14084216	14086874	.	-	.	ID=Os09t0401600-00;Name=Os09t0401600-00;Locus_id=Os09g0401600;Note=Similar to PUX2 (PLANT UBX DOMAIN-CONTAINING PROTEIN 2)%3B nucleic acid binding / zinc ion binding.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_565271.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=UBX (IPR001012);TENOR=Os09t0401600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	14086707	14086874	.	-	0	Parent=Os09t0401600-00
Chr09	irgsp1_rep	CDS	14085555	14085833	.	-	0	Parent=Os09t0401600-00
Chr09	irgsp1_rep	CDS	14084216	14084461	.	-	0	Parent=Os09t0401600-00
Chr09	irgsp1_rep	mRNA	14095779	14099857	.	+	.	ID=Os09t0401900-01;Name=Os09t0401900-01;Locus_id=Os09g0401900;Note=Similar to ER lumen protein retaining receptor.;Transcript_evidence=AK106516 (DDBJ%2C Best hit),AK103519 (DDBJ%2C Best hit);ORF_evidence=B9FES2 (UniProt);NIAS_FLcDNA=002-107-A11,J033131I01;TENOR=Os09t0401900-01
Chr09	irgsp1_rep	five_prime_UTR	14095779	14096021	.	+	.	Parent=Os09t0401900-01
Chr09	irgsp1_rep	CDS	14096022	14096047	.	+	0	Parent=Os09t0401900-01
Chr09	irgsp1_rep	CDS	14097827	14097879	.	+	1	Parent=Os09t0401900-01
Chr09	irgsp1_rep	CDS	14097968	14098078	.	+	2	Parent=Os09t0401900-01
Chr09	irgsp1_rep	CDS	14098160	14098296	.	+	2	Parent=Os09t0401900-01
Chr09	irgsp1_rep	CDS	14098375	14098453	.	+	0	Parent=Os09t0401900-01
Chr09	irgsp1_rep	CDS	14098549	14098642	.	+	2	Parent=Os09t0401900-01
Chr09	irgsp1_rep	CDS	14098733	14098785	.	+	1	Parent=Os09t0401900-01
Chr09	irgsp1_rep	CDS	14099058	14099138	.	+	2	Parent=Os09t0401900-01
Chr09	irgsp1_rep	CDS	14099228	14099481	.	+	2	Parent=Os09t0401900-01
Chr09	irgsp1_rep	three_prime_UTR	14099482	14099857	.	+	.	Parent=Os09t0401900-01
Chr09	irgsp1_rep	mRNA	14102039	14103802	.	-	.	ID=Os09t0402001-01;Name=Os09t0402001-01;Locus_id=Os09g0402001;Note=Hypothetical conserved gene.;Transcript_evidence=AK288837 (DDBJ%2C Best hit);ORF_evidence=B9G3H2 (UniProt);NIAS_FLcDNA=J090074D11;TENOR=Os09t0402001-01;KEGG=Os09t0402001-01
Chr09	irgsp1_rep	five_prime_UTR	14102898	14103802	.	-	.	Parent=Os09t0402001-01
Chr09	irgsp1_rep	CDS	14102436	14102897	.	-	0	Parent=Os09t0402001-01
Chr09	irgsp1_rep	three_prime_UTR	14102039	14102435	.	-	.	Parent=Os09t0402001-01
Chr09	irgsp1_rep	mRNA	14106185	14107309	.	-	.	ID=Os09t0402100-01;Name=Os09t0402100-01;Locus_id=Os09g0402100;Oryzabase Gene Symbol Synonym(s)=Os-PF1%2C PF1;Oryzabase Gene Name Synonym(s)=positive factor 1;Note=PF1 protein.;Transcript_evidence=AK068506 (DDBJ%2C Best hit);ORF_evidence=Q43600 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: Chromatin (GO:0000785),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=High mobility group%2C HMG-I/HMG-Y (IPR000116),Histone H1/H5 (IPR005818),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),AT hook%2C DNA-binding motif (IPR017956),AT hook-like (IPR020478);NIAS_FLcDNA=J013152P07;Oryzabase=13660;Expression=AK068506;TENOR=Os09t0402100-01;KEGG=Os09t0402100-01
Chr09	irgsp1_rep	five_prime_UTR	14107241	14107309	.	-	.	Parent=Os09t0402100-01
Chr09	irgsp1_rep	CDS	14107160	14107240	.	-	0	Parent=Os09t0402100-01
Chr09	irgsp1_rep	CDS	14106521	14107081	.	-	0	Parent=Os09t0402100-01
Chr09	irgsp1_rep	three_prime_UTR	14106185	14106520	.	-	.	Parent=Os09t0402100-01
Chr09	irgsp1_rep	mRNA	14110047	14112932	.	-	.	ID=Os09t0402300-01;Name=Os09t0402300-01;Locus_id=Os09g0402300;Note=Phosphatidylinositol-4-phosphate 5-kinase family protein.;Transcript_evidence=AK063300 (DDBJ%2C Best hit);ORF_evidence=NP_177257.3 (RefSeq);GO=Biological Process: phosphatidylinositol metabolic process (GO:0046488),Molecular Function: phosphatidylinositol phosphate kinase activity (GO:0016307);InterPro=Phosphatidylinositol-4-phosphate 5-kinase%2C core (IPR002498),Phosphatidylinositol-4-phosphate 5-kinase (IPR023610);NIAS_FLcDNA=001-113-F02;Oryzabase=23565;Expression=AK063300;TENOR=Os09t0402300-01;KEGG=Os09t0402300-01 (EC:2.7.1.68)
Chr09	irgsp1_rep	CDS	14112510	14112932	.	-	0	Parent=Os09t0402300-01
Chr09	irgsp1_rep	CDS	14112159	14112425	.	-	0	Parent=Os09t0402300-01
Chr09	irgsp1_rep	CDS	14110536	14110793	.	-	0	Parent=Os09t0402300-01
Chr09	irgsp1_rep	three_prime_UTR	14110047	14110535	.	-	.	Parent=Os09t0402300-01
Chr09	irgsp1_rep	mRNA	14132793	14133166	.	-	.	ID=Os09t0402533-00;Name=Os09t0402533-00;Locus_id=Os09g0402533;Note=Similar to DNA binding protein.;Transcript_evidence=EU962654 (DDBJ);ORF_evidence=B6TCD9 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box (IPR002100);TENOR=Os09t0402533-00
Chr09	irgsp1_rep	five_prime_UTR	14133108	14133166	.	-	.	Parent=Os09t0402533-00
Chr09	irgsp1_rep	CDS	14132922	14133107	.	-	0	Parent=Os09t0402533-00
Chr09	irgsp1_rep	three_prime_UTR	14132793	14132921	.	-	.	Parent=Os09t0402533-00
Chr09	irgsp1_rep	mRNA	14153041	14154150	.	-	.	ID=Os09t0403000-01;Name=Os09t0403000-01;Locus_id=Os09g0403000;Note=Hypothetical conserved gene.;Transcript_evidence=AK109933 (DDBJ%2C Best hit);ORF_evidence=B8BF64 (UniProt);NIAS_FLcDNA=002-152-G11;Expression=AK109933;TENOR=Os09t0403000-01;KEGG=Os09t0403000-01
Chr09	irgsp1_rep	five_prime_UTR	14154052	14154150	.	-	.	Parent=Os09t0403000-01
Chr09	irgsp1_rep	CDS	14153311	14154051	.	-	0	Parent=Os09t0403000-01
Chr09	irgsp1_rep	three_prime_UTR	14153041	14153310	.	-	.	Parent=Os09t0403000-01
Chr09	irgsp1_rep	mRNA	14149813	14153840	.	-	.	ID=Os09t0403000-02;Name=Os09t0403000-02;Locus_id=Os09g0403000;Note=Conserved hypothetical protein.;Transcript_evidence=AK111051 (DDBJ%2C Best hit);ORF_evidence=B8BF64 (UniProt);NIAS_FLcDNA=002-175-C08;TENOR=Os09t0403000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	14153839	14153840	.	-	.	Parent=Os09t0403000-02
Chr09	irgsp1_rep	CDS	14153389	14153838	.	-	0	Parent=Os09t0403000-02
Chr09	irgsp1_rep	CDS	14150189	14150233	.	-	0	Parent=Os09t0403000-02
Chr09	irgsp1_rep	three_prime_UTR	14149813	14150188	.	-	.	Parent=Os09t0403000-02
Chr09	irgsp1_rep	mRNA	14194229	14196610	.	-	.	ID=Os09t0403300-00;Name=Os09t0403300-00;Locus_id=Os09g0403300;Oryzabase Gene Symbol Synonym(s)=CYP735A4%2C OsCYP735A4;Oryzabase Gene Name Synonym(s)=cytoChrome 450 735A4;Note=Similar to cytoChrome P450.;Transcript_evidence=BT086378 (DDBJ);ORF_evidence=XP_002329282.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);Oryzabase=9845;TENOR=Os09t0403300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	14196591	14196610	.	-	.	Parent=Os09t0403300-00
Chr09	irgsp1_rep	CDS	14196302	14196590	.	-	0	Parent=Os09t0403300-00
Chr09	irgsp1_rep	CDS	14195992	14196227	.	-	2	Parent=Os09t0403300-00
Chr09	irgsp1_rep	CDS	14195679	14195918	.	-	0	Parent=Os09t0403300-00
Chr09	irgsp1_rep	CDS	14194885	14195287	.	-	0	Parent=Os09t0403300-00
Chr09	irgsp1_rep	CDS	14194229	14194791	.	-	2	Parent=Os09t0403300-00
Chr09	irgsp1_rep	mRNA	14251192	14252125	.	-	.	ID=Os09t0403967-01;Name=Os09t0403967-01;Locus_id=Os09g0403967;Note=Conserved hypothetical protein.;Transcript_evidence=AK287957 (DDBJ%2C Best hit);ORF_evidence=NP_001175825.1 (RefSeq);NIAS_FLcDNA=J075052C20;TENOR=Os09t0403967-01;KEGG=Os09t0403967-01
Chr09	irgsp1_rep	five_prime_UTR	14251768	14252125	.	-	.	Parent=Os09t0403967-01
Chr09	irgsp1_rep	CDS	14251210	14251767	.	-	0	Parent=Os09t0403967-01
Chr09	irgsp1_rep	three_prime_UTR	14251192	14251209	.	-	.	Parent=Os09t0403967-01
Chr09	irgsp1_rep	mRNA	14256524	14257186	.	-	.	ID=Os09t0404300-00;Name=Os09t0404300-00;Locus_id=Os09g0404300;Note=Similar to Uncharacterized protein OsI_031781.;Transcript_evidence=CT828170 (DDBJ%2C Best hit);ORF_evidence=A2Z5D8 (UniProt);TENOR=Os09t0404300-00;KEGG=Os09t0404300-00
Chr09	irgsp1_rep	five_prime_UTR	14257122	14257186	.	-	.	Parent=Os09t0404300-00
Chr09	irgsp1_rep	CDS	14256717	14257121	.	-	0	Parent=Os09t0404300-00
Chr09	irgsp1_rep	three_prime_UTR	14256524	14256716	.	-	.	Parent=Os09t0404300-00
Chr09	irgsp1_rep	mRNA	14258540	14259202	.	-	.	ID=Os09t0404400-00;Name=Os09t0404400-00;Locus_id=Os09g0404400;Note=Similar to Uncharacterized protein OsI_031781.;Transcript_evidence=CT828170 (DDBJ%2C Best hit);ORF_evidence=A2Z5D8 (UniProt);TENOR=Os09t0404400-00;KEGG=Os09t0404400-00
Chr09	irgsp1_rep	five_prime_UTR	14259138	14259202	.	-	.	Parent=Os09t0404400-00
Chr09	irgsp1_rep	CDS	14258733	14259137	.	-	0	Parent=Os09t0404400-00
Chr09	irgsp1_rep	three_prime_UTR	14258540	14258732	.	-	.	Parent=Os09t0404400-00
Chr09	irgsp1_rep	mRNA	14272635	14273297	.	-	.	ID=Os09t0404500-00;Name=Os09t0404500-00;Locus_id=Os09g0404500;Note=Similar to Uncharacterized protein OsI_031781.;Transcript_evidence=CT828170 (DDBJ%2C Best hit);ORF_evidence=A2Z5D8 (UniProt);TENOR=Os09t0404500-00;KEGG=Os09t0404500-00
Chr09	irgsp1_rep	five_prime_UTR	14273233	14273297	.	-	.	Parent=Os09t0404500-00
Chr09	irgsp1_rep	CDS	14272828	14273232	.	-	0	Parent=Os09t0404500-00
Chr09	irgsp1_rep	three_prime_UTR	14272635	14272827	.	-	.	Parent=Os09t0404500-00
Chr09	irgsp1_rep	mRNA	14274651	14275313	.	-	.	ID=Os09t0404600-00;Name=Os09t0404600-00;Locus_id=Os09g0404600;Note=Similar to Uncharacterized protein OsI_031781.;Transcript_evidence=CT828170 (DDBJ%2C Best hit);ORF_evidence=A2Z5D8 (UniProt);TENOR=Os09t0404600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	14275249	14275313	.	-	.	Parent=Os09t0404600-00
Chr09	irgsp1_rep	CDS	14274844	14275248	.	-	0	Parent=Os09t0404600-00
Chr09	irgsp1_rep	three_prime_UTR	14274651	14274843	.	-	.	Parent=Os09t0404600-00
Chr09	irgsp1_rep	mRNA	14276667	14277329	.	-	.	ID=Os09t0404700-00;Name=Os09t0404700-00;Locus_id=Os09g0404700;Note=Similar to Uncharacterized protein OsI_031781.;Transcript_evidence=CT828170 (DDBJ%2C Best hit);ORF_evidence=A2Z5D8 (UniProt);TENOR=Os09t0404700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	14277265	14277329	.	-	.	Parent=Os09t0404700-00
Chr09	irgsp1_rep	CDS	14276860	14277264	.	-	0	Parent=Os09t0404700-00
Chr09	irgsp1_rep	three_prime_UTR	14276667	14276859	.	-	.	Parent=Os09t0404700-00
Chr09	irgsp1_rep	mRNA	14278552	14279346	.	-	.	ID=Os09t0404800-01;Name=Os09t0404800-01;Locus_id=Os09g0404800;Note=Similar to Uncharacterized protein OsI_031781.;Transcript_evidence=AK288278 (DDBJ%2C Best hit);ORF_evidence=A2Z5D8 (UniProt);NIAS_FLcDNA=J090017N06;TENOR=Os09t0404800-01;KEGG=Os09t0404800-01
Chr09	irgsp1_rep	five_prime_UTR	14279279	14279346	.	-	.	Parent=Os09t0404800-01
Chr09	irgsp1_rep	CDS	14278874	14279278	.	-	0	Parent=Os09t0404800-01
Chr09	irgsp1_rep	three_prime_UTR	14278552	14278873	.	-	.	Parent=Os09t0404800-01
Chr09	irgsp1_rep	mRNA	14280697	14281359	.	-	.	ID=Os09t0405001-00;Name=Os09t0405001-00;Locus_id=Os09g0405001;Note=Similar to Uncharacterized protein OsI_031781.;Transcript_evidence=CT828170 (DDBJ%2C Best hit);ORF_evidence=A2Z5D8 (UniProt);TENOR=Os09t0405001-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	14281295	14281359	.	-	.	Parent=Os09t0405001-00
Chr09	irgsp1_rep	CDS	14280890	14281294	.	-	0	Parent=Os09t0405001-00
Chr09	irgsp1_rep	three_prime_UTR	14280697	14280889	.	-	.	Parent=Os09t0405001-00
Chr09	irgsp1_rep	mRNA	14294083	14294828	.	-	.	ID=Os09t0405200-00;Name=Os09t0405200-00;Locus_id=Os09g0405200;Note=Similar to Uncharacterized protein OsI_031781.;Transcript_evidence=AK120862 (DDBJ%2C Secondary hit);ORF_evidence=A2Z5D8 (UniProt);Expression=AK120862;TENOR=Os09t0405200-00;KEGG=Os09t0405200-00
Chr09	irgsp1_rep	five_prime_UTR	14294763	14294828	.	-	.	Parent=Os09t0405200-00
Chr09	irgsp1_rep	CDS	14294358	14294762	.	-	0	Parent=Os09t0405200-00
Chr09	irgsp1_rep	three_prime_UTR	14294250	14294357	.	-	.	Parent=Os09t0405200-00
Chr09	irgsp1_rep	three_prime_UTR	14294083	14294240	.	-	.	Parent=Os09t0405200-00
Chr09	irgsp1_rep	mRNA	14296097	14296832	.	-	.	ID=Os09t0405300-01;Name=Os09t0405300-01;Locus_id=Os09g0405300;Note=Similar to Uncharacterized protein OsI_031781.;Transcript_evidence=AK120862 (DDBJ%2C Best hit);ORF_evidence=A2Z5D8 (UniProt);NIAS_FLcDNA=J023024P06;Expression=AK120862;TENOR=Os09t0405300-01;KEGG=Os09t0405300-01
Chr09	irgsp1_rep	five_prime_UTR	14296767	14296832	.	-	.	Parent=Os09t0405300-01
Chr09	irgsp1_rep	CDS	14296362	14296766	.	-	0	Parent=Os09t0405300-01
Chr09	irgsp1_rep	three_prime_UTR	14296097	14296361	.	-	.	Parent=Os09t0405300-01
Chr09	irgsp1_rep	mRNA	14298053	14298838	.	-	.	ID=Os09t0405400-00;Name=Os09t0405400-00;Locus_id=Os09g0405400;Note=Similar to Uncharacterized protein OsI_030282.;Transcript_evidence=AK288278 (DDBJ%2C Secondary hit);ORF_evidence=A2Z139 (UniProt);TENOR=Os09t0405400-00;KEGG=Os09t0405400-00
Chr09	irgsp1_rep	five_prime_UTR	14298771	14298838	.	-	.	Parent=Os09t0405400-00
Chr09	irgsp1_rep	CDS	14298366	14298770	.	-	0	Parent=Os09t0405400-00
Chr09	irgsp1_rep	three_prime_UTR	14298053	14298365	.	-	.	Parent=Os09t0405400-00
Chr09	irgsp1_rep	mRNA	14300105	14300840	.	-	.	ID=Os09t0405500-01;Name=Os09t0405500-01;Locus_id=Os09g0405500;Note=Similar to Uncharacterized protein OsI_031781.;Transcript_evidence=AK120862 (DDBJ%2C Best hit);ORF_evidence=A2Z5D8 (UniProt);NIAS_FLcDNA=J023024P06;Expression=AK120862;TENOR=Os09t0405500-01;KEGG=Os09t0405500-01
Chr09	irgsp1_rep	five_prime_UTR	14300775	14300840	.	-	.	Parent=Os09t0405500-01
Chr09	irgsp1_rep	CDS	14300370	14300774	.	-	0	Parent=Os09t0405500-01
Chr09	irgsp1_rep	three_prime_UTR	14300105	14300369	.	-	.	Parent=Os09t0405500-01
Chr09	irgsp1_rep	mRNA	14302109	14302844	.	-	.	ID=Os09t0405600-01;Name=Os09t0405600-01;Locus_id=Os09g0405600;Note=Similar to Uncharacterized protein OsI_031781.;Transcript_evidence=AK120862 (DDBJ%2C Best hit);ORF_evidence=A2Z5D8 (UniProt);NIAS_FLcDNA=J023024P06;Expression=AK120862;TENOR=Os09t0405600-01;KEGG=Os09t0405600-01
Chr09	irgsp1_rep	five_prime_UTR	14302779	14302844	.	-	.	Parent=Os09t0405600-01
Chr09	irgsp1_rep	CDS	14302374	14302778	.	-	0	Parent=Os09t0405600-01
Chr09	irgsp1_rep	three_prime_UTR	14302109	14302373	.	-	.	Parent=Os09t0405600-01
Chr09	irgsp1_rep	mRNA	14325838	14326623	.	-	.	ID=Os09t0405900-00;Name=Os09t0405900-00;Locus_id=Os09g0405900;Note=Similar to Uncharacterized protein OsI_030282.;Transcript_evidence=AK288278 (DDBJ%2C Secondary hit);ORF_evidence=A2Z139 (UniProt);TENOR=Os09t0405900-00;KEGG=Os09t0405900-00
Chr09	irgsp1_rep	five_prime_UTR	14326556	14326623	.	-	.	Parent=Os09t0405900-00
Chr09	irgsp1_rep	CDS	14326151	14326555	.	-	0	Parent=Os09t0405900-00
Chr09	irgsp1_rep	three_prime_UTR	14325838	14326150	.	-	.	Parent=Os09t0405900-00
Chr09	irgsp1_rep	mRNA	14327890	14328635	.	-	.	ID=Os09t0406000-00;Name=Os09t0406000-00;Locus_id=Os09g0406000;Note=Similar to Uncharacterized protein OsI_031781.;Transcript_evidence=AK120862 (DDBJ%2C Secondary hit);ORF_evidence=A2Z5D8 (UniProt);Expression=AK120862;TENOR=Os09t0406000-00;KEGG=Os09t0406000-00
Chr09	irgsp1_rep	five_prime_UTR	14328570	14328635	.	-	.	Parent=Os09t0406000-00
Chr09	irgsp1_rep	CDS	14328165	14328569	.	-	0	Parent=Os09t0406000-00
Chr09	irgsp1_rep	three_prime_UTR	14328057	14328164	.	-	.	Parent=Os09t0406000-00
Chr09	irgsp1_rep	three_prime_UTR	14327890	14328047	.	-	.	Parent=Os09t0406000-00
Chr09	irgsp1_rep	mRNA	14329856	14330642	.	-	.	ID=Os09t0406100-00;Name=Os09t0406100-00;Locus_id=Os09g0406100;Note=Similar to Uncharacterized protein OsI_030282.;Transcript_evidence=AK288278 (DDBJ%2C Secondary hit);ORF_evidence=A2Z139 (UniProt);TENOR=Os09t0406100-00;KEGG=Os09t0406100-00
Chr09	irgsp1_rep	five_prime_UTR	14330575	14330642	.	-	.	Parent=Os09t0406100-00
Chr09	irgsp1_rep	CDS	14330170	14330574	.	-	0	Parent=Os09t0406100-00
Chr09	irgsp1_rep	three_prime_UTR	14329856	14330169	.	-	.	Parent=Os09t0406100-00
Chr09	irgsp1_rep	mRNA	14331861	14335674	.	-	.	ID=Os09t0406200-00;Name=Os09t0406200-00;Locus_id=Os09g0406200;Note=Similar to Uncharacterized protein OsI_031781.;Transcript_evidence=AK288278 (DDBJ%2C Secondary hit);ORF_evidence=A2Z5D8 (UniProt);TENOR=Os09t0406200-00;KEGG=Os09t0406200-00
Chr09	irgsp1_rep	five_prime_UTR	14335608	14335674	.	-	.	Parent=Os09t0406200-00
Chr09	irgsp1_rep	five_prime_UTR	14332589	14332590	.	-	.	Parent=Os09t0406200-00
Chr09	irgsp1_rep	CDS	14332184	14332588	.	-	0	Parent=Os09t0406200-00
Chr09	irgsp1_rep	three_prime_UTR	14331861	14332183	.	-	.	Parent=Os09t0406200-00
Chr09	irgsp1_rep	mRNA	14336894	14337690	.	-	.	ID=Os09t0406300-00;Name=Os09t0406300-00;Locus_id=Os09g0406300;Note=Similar to Uncharacterized protein OsI_031781.;Transcript_evidence=AK288278 (DDBJ%2C Secondary hit);ORF_evidence=A2Z5D8 (UniProt);TENOR=Os09t0406300-00;KEGG=Os09t0406300-00
Chr09	irgsp1_rep	five_prime_UTR	14337623	14337690	.	-	.	Parent=Os09t0406300-00
Chr09	irgsp1_rep	CDS	14337218	14337622	.	-	0	Parent=Os09t0406300-00
Chr09	irgsp1_rep	three_prime_UTR	14336894	14337217	.	-	.	Parent=Os09t0406300-00
Chr09	irgsp1_rep	mRNA	14342126	14342921	.	-	.	ID=Os09t0406400-00;Name=Os09t0406400-00;Locus_id=Os09g0406400;Note=Similar to Uncharacterized protein OsI_030282.;Transcript_evidence=AK288278 (DDBJ%2C Secondary hit);ORF_evidence=A2Z139 (UniProt);TENOR=Os09t0406400-00;KEGG=Os09t0406400-00
Chr09	irgsp1_rep	five_prime_UTR	14342854	14342921	.	-	.	Parent=Os09t0406400-00
Chr09	irgsp1_rep	CDS	14342449	14342853	.	-	0	Parent=Os09t0406400-00
Chr09	irgsp1_rep	three_prime_UTR	14342126	14342448	.	-	.	Parent=Os09t0406400-00
Chr09	irgsp1_rep	mRNA	14344142	14344926	.	-	.	ID=Os09t0406500-00;Name=Os09t0406500-00;Locus_id=Os09g0406500;Note=Similar to Uncharacterized protein OsI_030282.;Transcript_evidence=AK288278 (DDBJ%2C Secondary hit);ORF_evidence=A2Z139 (UniProt);TENOR=Os09t0406500-00;KEGG=Os09t0406500-00
Chr09	irgsp1_rep	five_prime_UTR	14344859	14344926	.	-	.	Parent=Os09t0406500-00
Chr09	irgsp1_rep	CDS	14344454	14344858	.	-	0	Parent=Os09t0406500-00
Chr09	irgsp1_rep	three_prime_UTR	14344142	14344453	.	-	.	Parent=Os09t0406500-00
Chr09	irgsp1_rep	mRNA	14351463	14360479	.	+	.	ID=Os09t0406900-01;Name=Os09t0406900-01;Locus_id=Os09g0406900;Note=Hypothetical protein.;Transcript_evidence=AK067460 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013101C01;TENOR=Os09t0406900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	14351463	14351875	.	+	.	Parent=Os09t0406900-01
Chr09	irgsp1_rep	five_prime_UTR	14359988	14360145	.	+	.	Parent=Os09t0406900-01
Chr09	irgsp1_rep	CDS	14360146	14360479	.	+	0	Parent=Os09t0406900-01
Chr09	irgsp1_rep	mRNA	14351463	14353799	.	+	.	ID=Os09t0406900-02;Name=Os09t0406900-02;Locus_id=Os09g0406900;Note=Non-protein coding transcript.;Transcript_evidence=AK063485 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-116-C03;TENOR=Os09t0406900-02
Chr09	irgsp1_rep	exon	14351463	14353799	.	+	.	Parent=Os09t0406900-02
Chr09	irgsp1_rep	mRNA	14359217	14359794	.	+	.	ID=Os09t0407050-00;Name=Os09t0407050-00;Locus_id=Os09g0407050;Note=Hypothetical gene.;Transcript_evidence=CT835837 (DDBJ%2C Best hit);ORF_evidence=GeneMark;TENOR=Os09t0407050-00;KEGG=Os09t0407050-00
Chr09	irgsp1_rep	CDS	14359217	14359480	.	+	0	Parent=Os09t0407050-00
Chr09	irgsp1_rep	three_prime_UTR	14359481	14359794	.	+	.	Parent=Os09t0407050-00
Chr09	irgsp1_rep	mRNA	14363035	14366942	.	+	.	ID=Os09t0407200-01;Name=Os09t0407200-01;Locus_id=Os09g0407200;CGSNL Gene Symbol=RAD23;CGSNL Gene Name=DNA REPAIR PROTEIN RAD23;Oryzabase Gene Symbol Synonym(s)=OsRAD23;Oryzabase Gene Name Synonym(s)=Probable DNA repair protein RAD23;Note=Similar to RAD23%2C isoform I.;Transcript_evidence=AK103130 (DDBJ%2C Best hit);ORF_evidence=B4FR10 (UniProt);GO=Biological Process: nucleotide-excision repair (GO:0006289),Biological Process: proteasomal ubiquitin-dependent protein catabolic process (GO:0043161),Cellular Component: nucleus (GO:0005634),Molecular Function: damaged DNA binding (GO:0003684),Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal (IPR000449),Ubiquitin (IPR000626),UV excision repair protein Rad23 (IPR004806),Heat shock chaperonin-binding (IPR006636),UBA-like (IPR009060),XPC-binding domain (IPR015360),Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (IPR015940),Ubiquitin supergroup (IPR019955);NIAS_FLcDNA=J033119P16;Oryzabase=6788;Expression=AK103130;TENOR=Os09t0407200-01;KEGG=Os09t0407200-01
Chr09	irgsp1_rep	five_prime_UTR	14363035	14363096	.	+	.	Parent=Os09t0407200-01
Chr09	irgsp1_rep	CDS	14363097	14363162	.	+	0	Parent=Os09t0407200-01
Chr09	irgsp1_rep	CDS	14363495	14363656	.	+	0	Parent=Os09t0407200-01
Chr09	irgsp1_rep	CDS	14364071	14364124	.	+	0	Parent=Os09t0407200-01
Chr09	irgsp1_rep	CDS	14364660	14364724	.	+	0	Parent=Os09t0407200-01
Chr09	irgsp1_rep	CDS	14365042	14365110	.	+	1	Parent=Os09t0407200-01
Chr09	irgsp1_rep	CDS	14365241	14365418	.	+	1	Parent=Os09t0407200-01
Chr09	irgsp1_rep	CDS	14365736	14365882	.	+	0	Parent=Os09t0407200-01
Chr09	irgsp1_rep	CDS	14365967	14366083	.	+	0	Parent=Os09t0407200-01
Chr09	irgsp1_rep	CDS	14366158	14366270	.	+	0	Parent=Os09t0407200-01
Chr09	irgsp1_rep	CDS	14366354	14366432	.	+	1	Parent=Os09t0407200-01
Chr09	irgsp1_rep	CDS	14366543	14366671	.	+	0	Parent=Os09t0407200-01
Chr09	irgsp1_rep	three_prime_UTR	14366672	14366942	.	+	.	Parent=Os09t0407200-01
Chr09	irgsp1_rep	mRNA	14366390	14366941	.	+	.	ID=Os09t0407200-02;Name=Os09t0407200-02;Locus_id=Os09g0407200;CGSNL Gene Symbol=RAD23;CGSNL Gene Name=DNA REPAIR PROTEIN RAD23;Oryzabase Gene Symbol Synonym(s)=OsRAD23;Oryzabase Gene Name Synonym(s)=Probable DNA repair protein RAD23;Note=Similar to DNA repair protein RAD23.;Transcript_evidence=AK066105 (DDBJ%2C Best hit);ORF_evidence=B4FQ07 (UniProt);GO=Biological Process: nucleotide-excision repair (GO:0006289),Cellular Component: nucleus (GO:0005634),Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal (IPR000449),UV excision repair protein Rad23 (IPR004806),UBA-like (IPR009060),Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (IPR015940);NIAS_FLcDNA=J013052E24;Oryzabase=6788;Expression=AK066105;TENOR=Os09t0407200-02;KEGG=Os09t0407200-02
Chr09	irgsp1_rep	five_prime_UTR	14366390	14366390	.	+	.	Parent=Os09t0407200-02
Chr09	irgsp1_rep	CDS	14366391	14366432	.	+	0	Parent=Os09t0407200-02
Chr09	irgsp1_rep	CDS	14366543	14366671	.	+	0	Parent=Os09t0407200-02
Chr09	irgsp1_rep	three_prime_UTR	14366672	14366941	.	+	.	Parent=Os09t0407200-02
Chr09	irgsp1_rep	mRNA	14366152	14366685	.	-	.	ID=Os09t0407250-00;Name=Os09t0407250-00;Locus_id=Os09g0407250;Note=Non-protein coding transcript.;Transcript_evidence=BT017634 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0407250-00
Chr09	irgsp1_rep	exon	14366535	14366685	.	-	.	Parent=Os09t0407250-00
Chr09	irgsp1_rep	exon	14366367	14366426	.	-	.	Parent=Os09t0407250-00
Chr09	irgsp1_rep	exon	14366152	14366282	.	-	.	Parent=Os09t0407250-00
Chr09	irgsp1_rep	mRNA	14368088	14373628	.	-	.	ID=Os09t0407300-01;Name=Os09t0407300-01;Locus_id=Os09g0407300;Note=Domain of unknown function SprT-like domain containing protein.;Transcript_evidence=AK103905 (DDBJ%2C Best hit);ORF_evidence=A2Z144 (UniProt);InterPro=Domain of unknown function SprT-like (IPR006640);NIAS_FLcDNA=J033150M17;Expression=AK103905;TENOR=Os09t0407300-01;KEGG=Os09t0407300-01
Chr09	irgsp1_rep	five_prime_UTR	14373489	14373628	.	-	.	Parent=Os09t0407300-01
Chr09	irgsp1_rep	CDS	14373340	14373488	.	-	0	Parent=Os09t0407300-01
Chr09	irgsp1_rep	CDS	14371786	14371941	.	-	1	Parent=Os09t0407300-01
Chr09	irgsp1_rep	CDS	14371651	14371717	.	-	1	Parent=Os09t0407300-01
Chr09	irgsp1_rep	CDS	14371489	14371575	.	-	0	Parent=Os09t0407300-01
Chr09	irgsp1_rep	CDS	14371255	14371376	.	-	0	Parent=Os09t0407300-01
Chr09	irgsp1_rep	CDS	14370782	14370858	.	-	1	Parent=Os09t0407300-01
Chr09	irgsp1_rep	CDS	14368388	14369742	.	-	2	Parent=Os09t0407300-01
Chr09	irgsp1_rep	three_prime_UTR	14368088	14368387	.	-	.	Parent=Os09t0407300-01
Chr09	irgsp1_rep	mRNA	14368067	14373604	.	-	.	ID=Os09t0407300-02;Name=Os09t0407300-02;Locus_id=Os09g0407300;Note=Domain of unknown function SprT-like domain containing protein.;Transcript_evidence=AK069164 (DDBJ%2C Best hit);ORF_evidence=A2Z144 (UniProt);InterPro=Domain of unknown function SprT-like (IPR006640);NIAS_FLcDNA=J023006A15;TENOR=Os09t0407300-02
Chr09	irgsp1_rep	five_prime_UTR	14373489	14373604	.	-	.	Parent=Os09t0407300-02
Chr09	irgsp1_rep	CDS	14373340	14373488	.	-	0	Parent=Os09t0407300-02
Chr09	irgsp1_rep	CDS	14371786	14371941	.	-	1	Parent=Os09t0407300-02
Chr09	irgsp1_rep	CDS	14371651	14371717	.	-	1	Parent=Os09t0407300-02
Chr09	irgsp1_rep	CDS	14371489	14371575	.	-	0	Parent=Os09t0407300-02
Chr09	irgsp1_rep	CDS	14371255	14371376	.	-	0	Parent=Os09t0407300-02
Chr09	irgsp1_rep	CDS	14370782	14370858	.	-	1	Parent=Os09t0407300-02
Chr09	irgsp1_rep	CDS	14368388	14369742	.	-	2	Parent=Os09t0407300-02
Chr09	irgsp1_rep	three_prime_UTR	14368067	14368387	.	-	.	Parent=Os09t0407300-02
Chr09	irgsp1_rep	mRNA	14378101	14387289	.	+	.	ID=Os09t0407600-01;Name=Os09t0407600-01;Locus_id=Os09g0407600;CGSNL Gene Symbol=MSH6;Oryzabase Gene Symbol Synonym(s)=OsMsh6%2C Msh6%2C OsMSH6;Oryzabase Gene Name Synonym(s)=AtMsh6 homolog%2C MutS mismatch repair homolog protein 6;Note=Similar to DNA mismatch repair protein.;Transcript_evidence=AK242913 (DDBJ%2C Best hit);ORF_evidence=A3BYP3 (UniProt);GO=Biological Process: mismatch repair (GO:0006298),Molecular Function: ATP binding (GO:0005524),Molecular Function: mismatched DNA binding (GO:0030983);InterPro=Tudor domain (IPR002999),DNA mismatch repair protein MutS-like%2C N-terminal (IPR007695),DNA mismatch repair protein MutS%2C core (IPR007696),DNA mismatch repair protein MutS%2C connector (IPR007860),DNA mismatch repair protein MutS-homologue MSH6 (IPR015536),DNA mismatch repair protein MutS%2C N-terminal (IPR016151);NIAS_FLcDNA=J090083F23;Oryzabase=21743;TENOR=Os09t0407600-01;KEGG=Os09t0407600-01
Chr09	irgsp1_rep	five_prime_UTR	14378101	14378102	.	+	.	Parent=Os09t0407600-01
Chr09	irgsp1_rep	CDS	14378103	14378925	.	+	0	Parent=Os09t0407600-01
Chr09	irgsp1_rep	CDS	14379002	14379098	.	+	2	Parent=Os09t0407600-01
Chr09	irgsp1_rep	CDS	14379826	14379928	.	+	1	Parent=Os09t0407600-01
Chr09	irgsp1_rep	CDS	14380010	14380063	.	+	0	Parent=Os09t0407600-01
Chr09	irgsp1_rep	CDS	14380146	14380220	.	+	0	Parent=Os09t0407600-01
Chr09	irgsp1_rep	CDS	14380338	14380406	.	+	0	Parent=Os09t0407600-01
Chr09	irgsp1_rep	CDS	14380491	14380574	.	+	0	Parent=Os09t0407600-01
Chr09	irgsp1_rep	CDS	14380766	14380963	.	+	0	Parent=Os09t0407600-01
Chr09	irgsp1_rep	CDS	14381079	14381578	.	+	0	Parent=Os09t0407600-01
Chr09	irgsp1_rep	CDS	14381662	14381791	.	+	1	Parent=Os09t0407600-01
Chr09	irgsp1_rep	CDS	14383427	14383429	.	+	0	Parent=Os09t0407600-01
Chr09	irgsp1_rep	three_prime_UTR	14383430	14383605	.	+	.	Parent=Os09t0407600-01
Chr09	irgsp1_rep	three_prime_UTR	14383765	14383967	.	+	.	Parent=Os09t0407600-01
Chr09	irgsp1_rep	three_prime_UTR	14384049	14384150	.	+	.	Parent=Os09t0407600-01
Chr09	irgsp1_rep	three_prime_UTR	14384698	14384860	.	+	.	Parent=Os09t0407600-01
Chr09	irgsp1_rep	three_prime_UTR	14385341	14385630	.	+	.	Parent=Os09t0407600-01
Chr09	irgsp1_rep	three_prime_UTR	14385739	14385876	.	+	.	Parent=Os09t0407600-01
Chr09	irgsp1_rep	three_prime_UTR	14385962	14386041	.	+	.	Parent=Os09t0407600-01
Chr09	irgsp1_rep	three_prime_UTR	14386161	14386257	.	+	.	Parent=Os09t0407600-01
Chr09	irgsp1_rep	three_prime_UTR	14386336	14386465	.	+	.	Parent=Os09t0407600-01
Chr09	irgsp1_rep	three_prime_UTR	14386572	14387289	.	+	.	Parent=Os09t0407600-01
Chr09	irgsp1_rep	mRNA	14378100	14386813	.	+	.	ID=Os09t0407600-02;Name=Os09t0407600-02;Locus_id=Os09g0407600;RAP-DB Gene Symbol Synonym(s)=OsMSH6;CGSNL Gene Symbol=MSH6;Oryzabase Gene Symbol Synonym(s)=OsMsh6%2C Msh6%2C OsMSH6;Oryzabase Gene Name Synonym(s)=AtMsh6 homolog%2C MutS mismatch repair homolog protein 6;Note=Homolog of AtMSH6%2C Component of the DNA mismatch repair (MMR) system%2C Maintenance of  microsatellite stability and homeologous recombination;Transcript_evidence=Inferred from literature;ORF_evidence=A3BYP3;GO=Biological Process: mismatch repair (GO:0006298),Molecular Function: ATP binding (GO:0005524),Molecular Function: mismatched DNA binding (GO:0030983);InterPro=DNA mismatch repair protein MutS%2C N-terminal (IPR016151),MutS%2C connector domain superfamily (IPR036678),DNA mismatch repair protein MutS%2C core domain superfamily (IPR036187),P-loop containing nucleoside triphosphate hydrolase (IPR027417),DNA mismatch repair protein MutS/MSH (IPR017261),Tudor domain (IPR002999),DNA mismatch repair protein MutS-like%2C N-terminal (IPR007695),DNA mismatch repair protein MutS%2C connector domain (IPR007860),DNA mismatch repair protein MutS%2C core (IPR007696),DNA mismatch repair protein MutS%2C clamp (IPR007861),DNA mismatch repair protein MutS%2C C-terminal (IPR000432);Manual Curation=March 23%2C 2020;Literature_PMID=32194600;Oryzabase=21743
Chr09	irgsp1_rep	CDS	14378100	14378925	.	+	0	Parent=Os09t0407600-02
Chr09	irgsp1_rep	CDS	14379002	14379098	.	+	2	Parent=Os09t0407600-02
Chr09	irgsp1_rep	CDS	14379826	14379928	.	+	1	Parent=Os09t0407600-02
Chr09	irgsp1_rep	CDS	14380010	14380063	.	+	0	Parent=Os09t0407600-02
Chr09	irgsp1_rep	CDS	14380248	14380301	.	+	0	Parent=Os09t0407600-02
Chr09	irgsp1_rep	CDS	14380338	14380406	.	+	0	Parent=Os09t0407600-02
Chr09	irgsp1_rep	CDS	14380491	14380574	.	+	0	Parent=Os09t0407600-02
Chr09	irgsp1_rep	CDS	14380766	14380963	.	+	0	Parent=Os09t0407600-02
Chr09	irgsp1_rep	CDS	14381079	14381578	.	+	0	Parent=Os09t0407600-02
Chr09	irgsp1_rep	CDS	14381662	14381791	.	+	1	Parent=Os09t0407600-02
Chr09	irgsp1_rep	CDS	14382877	14382968	.	+	0	Parent=Os09t0407600-02
Chr09	irgsp1_rep	CDS	14383427	14383605	.	+	1	Parent=Os09t0407600-02
Chr09	irgsp1_rep	CDS	14383765	14383967	.	+	2	Parent=Os09t0407600-02
Chr09	irgsp1_rep	CDS	14384049	14384150	.	+	0	Parent=Os09t0407600-02
Chr09	irgsp1_rep	CDS	14384698	14384860	.	+	0	Parent=Os09t0407600-02
Chr09	irgsp1_rep	CDS	14385341	14385630	.	+	2	Parent=Os09t0407600-02
Chr09	irgsp1_rep	CDS	14385739	14385876	.	+	0	Parent=Os09t0407600-02
Chr09	irgsp1_rep	CDS	14385962	14386041	.	+	0	Parent=Os09t0407600-02
Chr09	irgsp1_rep	CDS	14386161	14386257	.	+	1	Parent=Os09t0407600-02
Chr09	irgsp1_rep	CDS	14386336	14386465	.	+	0	Parent=Os09t0407600-02
Chr09	irgsp1_rep	CDS	14386572	14386813	.	+	2	Parent=Os09t0407600-02
Chr09	irgsp1_rep	mRNA	14378300	14380202	.	-	.	ID=Os09t0407650-00;Name=Os09t0407650-00;Locus_id=Os09g0407650;Note=Hypothetical gene.;Transcript_evidence=BT083923 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0407650-00
Chr09	irgsp1_rep	five_prime_UTR	14380144	14380202	.	-	.	Parent=Os09t0407650-00
Chr09	irgsp1_rep	five_prime_UTR	14379990	14380061	.	-	.	Parent=Os09t0407650-00
Chr09	irgsp1_rep	five_prime_UTR	14379821	14379912	.	-	.	Parent=Os09t0407650-00
Chr09	irgsp1_rep	five_prime_UTR	14379002	14379090	.	-	.	Parent=Os09t0407650-00
Chr09	irgsp1_rep	five_prime_UTR	14378770	14378925	.	-	.	Parent=Os09t0407650-00
Chr09	irgsp1_rep	CDS	14378398	14378769	.	-	0	Parent=Os09t0407650-00
Chr09	irgsp1_rep	three_prime_UTR	14378300	14378397	.	-	.	Parent=Os09t0407650-00
Chr09	irgsp1_rep	mRNA	14387547	14389885	.	-	.	ID=Os09t0407700-01;Name=Os09t0407700-01;Locus_id=Os09g0407700;Note=Haloacid dehalogenase-like hydrolase domain containing protein.;Transcript_evidence=AK242928 (DDBJ%2C Best hit);ORF_evidence=B6T3S1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity (GO:0016787);InterPro=Haloacid dehalogenase-like hydrolase (IPR005834),HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 (IPR006402),HAD-like domain (IPR023214);NIAS_FLcDNA=J090085P19;TENOR=Os09t0407700-01;KEGG=Os09t0407700-01
Chr09	irgsp1_rep	five_prime_UTR	14389783	14389885	.	-	.	Parent=Os09t0407700-01
Chr09	irgsp1_rep	CDS	14389745	14389782	.	-	0	Parent=Os09t0407700-01
Chr09	irgsp1_rep	CDS	14388690	14388798	.	-	1	Parent=Os09t0407700-01
Chr09	irgsp1_rep	CDS	14388462	14388616	.	-	0	Parent=Os09t0407700-01
Chr09	irgsp1_rep	CDS	14388028	14388289	.	-	1	Parent=Os09t0407700-01
Chr09	irgsp1_rep	CDS	14387747	14387941	.	-	0	Parent=Os09t0407700-01
Chr09	irgsp1_rep	three_prime_UTR	14387547	14387746	.	-	.	Parent=Os09t0407700-01
Chr09	irgsp1_rep	mRNA	14390340	14392934	.	-	.	ID=Os09t0407800-01;Name=Os09t0407800-01;Locus_id=Os09g0407800;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK105259 (DDBJ%2C Best hit),AK102898 (DDBJ%2C Best hit);ORF_evidence=A3BYP5 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-114-H02,J033112P18;Expression=AK105259;TENOR=Os09t0407800-01;KEGG=Os09t0407800-01
Chr09	irgsp1_rep	five_prime_UTR	14392920	14392934	.	-	.	Parent=Os09t0407800-01
Chr09	irgsp1_rep	CDS	14391081	14392919	.	-	0	Parent=Os09t0407800-01
Chr09	irgsp1_rep	three_prime_UTR	14390340	14391080	.	-	.	Parent=Os09t0407800-01
Chr09	irgsp1_rep	mRNA	14394560	14399401	.	-	.	ID=Os09t0407900-01;Name=Os09t0407900-01;Locus_id=Os09g0407900;CGSNL Gene Symbol=UBP9-2;CGSNL Gene Name=UBIQUITIN-SPECIFIC PROCESSING PROTEASE 9-2;Oryzabase Gene Symbol Synonym(s)=OsUBP9-2%2C OsUBP34%2C UBP34;Oryzabase Gene Name Synonym(s)=ubiquitin-specific processing protease 9-2%2C Ubiquitin-specific protease 34;Note=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 family protein.;Transcript_evidence=AK070971 (DDBJ%2C Best hit);ORF_evidence=B6U7Y7 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Cellular Component: intracellular (GO:0005622),Molecular Function: ubiquitin thiolesterase activity (GO:0004221),Molecular Function: zinc ion binding (GO:0008270);InterPro=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (IPR001394),Zinc finger%2C UBP-type (IPR001607),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J023074K10;Oryzabase=22893;Expression=AK070971;TENOR=Os09t0407900-01;KEGG=Os09t0407900-01
Chr09	irgsp1_rep	five_prime_UTR	14399221	14399401	.	-	.	Parent=Os09t0407900-01
Chr09	irgsp1_rep	CDS	14398873	14399220	.	-	0	Parent=Os09t0407900-01
Chr09	irgsp1_rep	CDS	14397613	14397857	.	-	0	Parent=Os09t0407900-01
Chr09	irgsp1_rep	CDS	14397448	14397532	.	-	1	Parent=Os09t0407900-01
Chr09	irgsp1_rep	CDS	14396801	14396986	.	-	0	Parent=Os09t0407900-01
Chr09	irgsp1_rep	CDS	14396537	14396704	.	-	0	Parent=Os09t0407900-01
Chr09	irgsp1_rep	CDS	14396268	14396462	.	-	0	Parent=Os09t0407900-01
Chr09	irgsp1_rep	CDS	14395546	14395717	.	-	0	Parent=Os09t0407900-01
Chr09	irgsp1_rep	CDS	14395294	14395465	.	-	2	Parent=Os09t0407900-01
Chr09	irgsp1_rep	CDS	14395109	14395202	.	-	1	Parent=Os09t0407900-01
Chr09	irgsp1_rep	three_prime_UTR	14394560	14395108	.	-	.	Parent=Os09t0407900-01
Chr09	irgsp1_rep	mRNA	14404531	14413663	.	+	.	ID=Os09t0407950-01;Name=Os09t0407950-01;Locus_id=Os09g0407950;Note=Similar to transducin family protein / WD-40 repeat family protein.;Transcript_evidence=AK288701 (DDBJ%2C Best hit);ORF_evidence=NP_190628.5 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J090061E11;TENOR=Os09t0407950-01;KEGG=Os09t0407950-01
Chr09	irgsp1_rep	five_prime_UTR	14404531	14404535	.	+	.	Parent=Os09t0407950-01
Chr09	irgsp1_rep	CDS	14404536	14404815	.	+	0	Parent=Os09t0407950-01
Chr09	irgsp1_rep	CDS	14405671	14405780	.	+	2	Parent=Os09t0407950-01
Chr09	irgsp1_rep	CDS	14406087	14406252	.	+	0	Parent=Os09t0407950-01
Chr09	irgsp1_rep	CDS	14406391	14406491	.	+	2	Parent=Os09t0407950-01
Chr09	irgsp1_rep	CDS	14406611	14406683	.	+	0	Parent=Os09t0407950-01
Chr09	irgsp1_rep	CDS	14406762	14406903	.	+	2	Parent=Os09t0407950-01
Chr09	irgsp1_rep	CDS	14407890	14408050	.	+	1	Parent=Os09t0407950-01
Chr09	irgsp1_rep	CDS	14408668	14408792	.	+	2	Parent=Os09t0407950-01
Chr09	irgsp1_rep	CDS	14408877	14408976	.	+	0	Parent=Os09t0407950-01
Chr09	irgsp1_rep	CDS	14409231	14409327	.	+	2	Parent=Os09t0407950-01
Chr09	irgsp1_rep	CDS	14409449	14409500	.	+	1	Parent=Os09t0407950-01
Chr09	irgsp1_rep	CDS	14409725	14409826	.	+	0	Parent=Os09t0407950-01
Chr09	irgsp1_rep	CDS	14409907	14410053	.	+	0	Parent=Os09t0407950-01
Chr09	irgsp1_rep	CDS	14410136	14410307	.	+	0	Parent=Os09t0407950-01
Chr09	irgsp1_rep	CDS	14410403	14410642	.	+	2	Parent=Os09t0407950-01
Chr09	irgsp1_rep	CDS	14410788	14410942	.	+	2	Parent=Os09t0407950-01
Chr09	irgsp1_rep	CDS	14411216	14411344	.	+	0	Parent=Os09t0407950-01
Chr09	irgsp1_rep	CDS	14411476	14411593	.	+	0	Parent=Os09t0407950-01
Chr09	irgsp1_rep	CDS	14411740	14411935	.	+	2	Parent=Os09t0407950-01
Chr09	irgsp1_rep	CDS	14412768	14412879	.	+	1	Parent=Os09t0407950-01
Chr09	irgsp1_rep	CDS	14412956	14413110	.	+	0	Parent=Os09t0407950-01
Chr09	irgsp1_rep	CDS	14413233	14413281	.	+	1	Parent=Os09t0407950-01
Chr09	irgsp1_rep	three_prime_UTR	14413282	14413663	.	+	.	Parent=Os09t0407950-01
Chr09	irgsp1_rep	mRNA	14414435	14416558	.	+	.	ID=Os09t0408000-01;Name=Os09t0408000-01;Locus_id=Os09g0408000;Note=Similar to transducin family protein.;Transcript_evidence=AK059658 (DDBJ%2C Best hit);ORF_evidence=XP_002876038.1 (RefSeq);NIAS_FLcDNA=001-031-D06;TENOR=Os09t0408000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	14414435	14414436	.	+	.	Parent=Os09t0408000-01
Chr09	irgsp1_rep	CDS	14414437	14415231	.	+	0	Parent=Os09t0408000-01
Chr09	irgsp1_rep	CDS	14415314	14415508	.	+	0	Parent=Os09t0408000-01
Chr09	irgsp1_rep	CDS	14415865	14416335	.	+	0	Parent=Os09t0408000-01
Chr09	irgsp1_rep	three_prime_UTR	14416336	14416558	.	+	.	Parent=Os09t0408000-01
Chr09	irgsp1_rep	mRNA	14437870	14439850	.	+	.	ID=Os09t0408300-00;Name=Os09t0408300-00;Locus_id=Os09g0408300;Note=Similar to Agenet domain containing protein.;Transcript_evidence=EU945815 (DDBJ);ORF_evidence=Q338G9 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: RNA binding (GO:0003723);InterPro=Bromo adjacent homology (BAH) domain (IPR001025),Agenet (IPR008395);TENOR=Os09t0408300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	14437870	14437877	.	+	.	Parent=Os09t0408300-00
Chr09	irgsp1_rep	CDS	14437878	14438414	.	+	0	Parent=Os09t0408300-00
Chr09	irgsp1_rep	CDS	14438493	14438648	.	+	0	Parent=Os09t0408300-00
Chr09	irgsp1_rep	CDS	14439584	14439850	.	+	0	Parent=Os09t0408300-00
Chr09	irgsp1_rep	mRNA	14453467	14454035	.	+	.	ID=Os09t0408550-00;Name=Os09t0408550-00;Locus_id=Os09g0408550;Note=Heavy metal-associated domain%2C HMA domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001063141.1 (RefSeq);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);TENOR=Os09t0408550-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	14453467	14453539	.	+	0	Parent=Os09t0408550-00
Chr09	irgsp1_rep	CDS	14453839	14454035	.	+	2	Parent=Os09t0408550-00
Chr09	irgsp1_rep	mRNA	14454765	14457455	.	-	.	ID=Os09t0408600-01;Name=Os09t0408600-01;Locus_id=Os09g0408600;Note=Similar to Dihydrolipoamide S-acetyltransferase (EC 2.3.1.12).;Transcript_evidence=AK060606 (DDBJ%2C Best hit);ORF_evidence=NP_001152158.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Biotin/lipoyl attachment (IPR000089),2-oxoacid dehydrogenase acyltransferase%2C catalytic domain (IPR001078),2-oxo acid dehydrogenase%2C lipoyl-binding site (IPR003016),E3 binding (IPR004167),Single hybrid motif (IPR011053),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=001-025-B10;Expression=AK060606;TENOR=Os09t0408600-01;KEGG=Os09t0408600-01 (EC:2.3.1.12)
Chr09	irgsp1_rep	five_prime_UTR	14457389	14457455	.	-	.	Parent=Os09t0408600-01
Chr09	irgsp1_rep	CDS	14456423	14457388	.	-	0	Parent=Os09t0408600-01
Chr09	irgsp1_rep	CDS	14456138	14456329	.	-	0	Parent=Os09t0408600-01
Chr09	irgsp1_rep	CDS	14455944	14456031	.	-	0	Parent=Os09t0408600-01
Chr09	irgsp1_rep	CDS	14455795	14455865	.	-	2	Parent=Os09t0408600-01
Chr09	irgsp1_rep	CDS	14455604	14455687	.	-	0	Parent=Os09t0408600-01
Chr09	irgsp1_rep	CDS	14454944	14455048	.	-	0	Parent=Os09t0408600-01
Chr09	irgsp1_rep	three_prime_UTR	14454765	14454943	.	-	.	Parent=Os09t0408600-01
Chr09	irgsp1_rep	mRNA	14463579	14469297	.	+	.	ID=Os09t0408900-00;Name=Os09t0408900-00;Locus_id=Os09g0408900;CGSNL Gene Symbol=RLCK270;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 270;Oryzabase Gene Symbol Synonym(s)=OsRLCK270;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 270;Note=Similar to kinase family protein.;Transcript_evidence=BT064030 (DDBJ);ORF_evidence=XP_002888792.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18959;TENOR=Os09t0408900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	14463579	14464087	.	+	0	Parent=Os09t0408900-00
Chr09	irgsp1_rep	CDS	14468020	14468431	.	+	1	Parent=Os09t0408900-00
Chr09	irgsp1_rep	CDS	14468718	14469179	.	+	0	Parent=Os09t0408900-00
Chr09	irgsp1_rep	three_prime_UTR	14469180	14469297	.	+	.	Parent=Os09t0408900-00
Chr09	irgsp1_rep	mRNA	14463767	14468289	.	-	.	ID=Os09t0408933-00;Name=Os09t0408933-00;Locus_id=Os09g0408933;Note=Hypothetical protein.;Transcript_evidence=EU951884 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0408933-00
Chr09	irgsp1_rep	five_prime_UTR	14468288	14468289	.	-	.	Parent=Os09t0408933-00
Chr09	irgsp1_rep	CDS	14468024	14468287	.	-	0	Parent=Os09t0408933-00
Chr09	irgsp1_rep	CDS	14464011	14464049	.	-	0	Parent=Os09t0408933-00
Chr09	irgsp1_rep	three_prime_UTR	14463767	14464010	.	-	.	Parent=Os09t0408933-00
Chr09	irgsp1_rep	mRNA	14468687	14469196	.	-	.	ID=Os09t0408966-00;Name=Os09t0408966-00;Locus_id=Os09g0408966;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os09t0408966-00
Chr09	irgsp1_rep	CDS	14468687	14469196	.	-	0	Parent=Os09t0408966-00
Chr09	irgsp1_rep	mRNA	14473052	14474028	.	-	.	ID=Os09t0409000-01;Name=Os09t0409000-01;Locus_id=Os09g0409000;CGSNL Gene Symbol=THI32;CGSNL Gene Name=THIONIN 32;Oryzabase Gene Symbol Synonym(s)=OsTHI32%2C OsTHION32%2C THION32;Oryzabase Gene Name Synonym(s)=Thionin 32;Note=Conserved hypothetical protein.;Transcript_evidence=AK107676 (DDBJ%2C Best hit);ORF_evidence=A2Z156 (UniProt);NIAS_FLcDNA=002-132-A02;Oryzabase=19272;Expression=AK107676;TENOR=Os09t0409000-01;KEGG=Os09t0409000-01
Chr09	irgsp1_rep	five_prime_UTR	14473939	14474028	.	-	.	Parent=Os09t0409000-01
Chr09	irgsp1_rep	CDS	14473558	14473938	.	-	0	Parent=Os09t0409000-01
Chr09	irgsp1_rep	three_prime_UTR	14473052	14473557	.	-	.	Parent=Os09t0409000-01
Chr09	irgsp1_rep	mRNA	14479033	14479842	.	-	.	ID=Os09t0409100-01;Name=Os09t0409100-01;Locus_id=Os09g0409100;Note=Conserved hypothetical protein.;Transcript_evidence=AK243279 (DDBJ%2C Best hit);ORF_evidence=NP_001063146.2 (RefSeq);NIAS_FLcDNA=J100050O22;TENOR=Os09t0409100-01;KEGG=Os09t0409100-01
Chr09	irgsp1_rep	five_prime_UTR	14479754	14479842	.	-	.	Parent=Os09t0409100-01
Chr09	irgsp1_rep	CDS	14479391	14479753	.	-	0	Parent=Os09t0409100-01
Chr09	irgsp1_rep	three_prime_UTR	14479033	14479390	.	-	.	Parent=Os09t0409100-01
Chr09	irgsp1_rep	mRNA	14500326	14500387	.	-	.	ID=Os09t0409312-00;Name=Os09t0409312-00;Locus_id=Os09g0409312;Note=Non-protein coding transcript.;Transcript_evidence=EU941912 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0409312-00
Chr09	irgsp1_rep	exon	14500326	14500387	.	-	.	Parent=Os09t0409312-00
Chr09	irgsp1_rep	mRNA	14531028	14533972	.	+	.	ID=Os09t0409950-01;Name=Os09t0409950-01;Locus_id=Os09g0409950;Oryzabase Gene Symbol Synonym(s)=BIP120;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 120%2C BRI1-interacting protein 120%2C brassinosteroid receptor kinase-interacting protein 120;Note=Hypothetical conserved gene.;Transcript_evidence=AK240699 (DDBJ%2C Best hit);ORF_evidence=B9G3J0 (UniProt);NIAS_FLcDNA=J043013O18;Oryzabase=13701;TENOR=Os09t0409950-01
Chr09	irgsp1_rep	five_prime_UTR	14531028	14531189	.	+	.	Parent=Os09t0409950-01
Chr09	irgsp1_rep	CDS	14531190	14531326	.	+	0	Parent=Os09t0409950-01
Chr09	irgsp1_rep	CDS	14533527	14533972	.	+	1	Parent=Os09t0409950-01
Chr09	irgsp1_rep	mRNA	14537648	14542933	.	+	.	ID=Os09t0410125-00;Name=Os09t0410125-00;Locus_id=Os09g0410125;Note=Similar to membrane alanyl aminopeptidase.;Transcript_evidence=AK374504 (DDBJ);ORF_evidence=XP_002888954.1 (RefSeq);TENOR=Os09t0410125-00
Chr09	irgsp1_rep	CDS	14537648	14537776	.	+	0	Parent=Os09t0410125-00
Chr09	irgsp1_rep	CDS	14538145	14538201	.	+	0	Parent=Os09t0410125-00
Chr09	irgsp1_rep	CDS	14539160	14539257	.	+	0	Parent=Os09t0410125-00
Chr09	irgsp1_rep	CDS	14539354	14539689	.	+	1	Parent=Os09t0410125-00
Chr09	irgsp1_rep	CDS	14539767	14539854	.	+	1	Parent=Os09t0410125-00
Chr09	irgsp1_rep	CDS	14541542	14541667	.	+	0	Parent=Os09t0410125-00
Chr09	irgsp1_rep	CDS	14542705	14542784	.	+	0	Parent=Os09t0410125-00
Chr09	irgsp1_rep	CDS	14542879	14542933	.	+	1	Parent=Os09t0410125-00
Chr09	irgsp1_rep	mRNA	14545092	14547798	.	+	.	ID=Os09t0410300-01;Name=Os09t0410300-01;Locus_id=Os09g0410300;Oryzabase Gene Symbol Synonym(s)=qCTS-9;Oryzabase Gene Name Synonym(s)=cold tolerance at seedling stage (QTL)-9;Note=Similar to BRI1-KD interacting protein 120 (Fragment).;Transcript_evidence=AK064203 (DDBJ%2C Best hit);ORF_evidence=Q761Z4 (UniProt);NIAS_FLcDNA=002-104-E01;Oryzabase=21658;Expression=AK064203;TENOR=Os09t0410300-01;KEGG=Os09t0410300-01
Chr09	irgsp1_rep	five_prime_UTR	14545092	14545146	.	+	.	Parent=Os09t0410300-01
Chr09	irgsp1_rep	five_prime_UTR	14545223	14545406	.	+	.	Parent=Os09t0410300-01
Chr09	irgsp1_rep	five_prime_UTR	14546438	14546885	.	+	.	Parent=Os09t0410300-01
Chr09	irgsp1_rep	CDS	14546886	14547560	.	+	0	Parent=Os09t0410300-01
Chr09	irgsp1_rep	three_prime_UTR	14547561	14547798	.	+	.	Parent=Os09t0410300-01
Chr09	irgsp1_rep	mRNA	14555403	14557393	.	+	.	ID=Os09t0410400-01;Name=Os09t0410400-01;Locus_id=Os09g0410400;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=AK072004 (DDBJ%2C Best hit);ORF_evidence=NP_177535.2 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J013094L24;Expression=AK072004;TENOR=Os09t0410400-01;KEGG=Os09t0410400-01
Chr09	irgsp1_rep	five_prime_UTR	14555403	14556136	.	+	.	Parent=Os09t0410400-01
Chr09	irgsp1_rep	CDS	14556137	14556241	.	+	0	Parent=Os09t0410400-01
Chr09	irgsp1_rep	CDS	14556312	14556392	.	+	0	Parent=Os09t0410400-01
Chr09	irgsp1_rep	CDS	14556661	14556740	.	+	0	Parent=Os09t0410400-01
Chr09	irgsp1_rep	CDS	14556905	14557016	.	+	1	Parent=Os09t0410400-01
Chr09	irgsp1_rep	three_prime_UTR	14557017	14557393	.	+	.	Parent=Os09t0410400-01
Chr09	irgsp1_rep	mRNA	14566850	14568219	.	+	.	ID=Os09t0410500-01;Name=Os09t0410500-01;Locus_id=Os09g0410500;RAP-DB Gene Symbol Synonym(s)=REP1%2C SDP1;RAP-DB Gene Name Synonym(s)=RETARDED PALEA 1%2C  SMALL DEGENERATIVE PALEA 1;CGSNL Gene Symbol=REP1;CGSNL Gene Name=RETARDED PALEA 1;Oryzabase Gene Symbol Synonym(s)=OsTCP24%2C REP1%2C TCP24%2C SDP1%2C SDP1/REP1;Oryzabase Gene Name Synonym(s)=TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 24%2C RETARDED PALEA1%2C SMALL DEGENERATIVE PALEA 1.;Note=TCP family transcription factor%2C Regulation of palea development%2C Control of floral zygomorphy;Transcript_evidence=EU702407;ORF_evidence=B8QT91;InterPro=Transcription factor%2C TCP (IPR005333),Transcription factor TCP subgroup (IPR017887);Manual Curation=February 20%2C 2018;Literature_PMID=29122595,18952859;Oryzabase=12388;TENOR=Os09t0410500-00;KEGG=Os09t0410500-00;Subcellular location=nucleus (GO:0005634)
Chr09	irgsp1_rep	five_prime_UTR	14566850	14567291	.	+	.	Parent=Os09t0410500-01
Chr09	irgsp1_rep	CDS	14567292	14568020	.	+	0	Parent=Os09t0410500-01
Chr09	irgsp1_rep	three_prime_UTR	14568021	14568219	.	+	.	Parent=Os09t0410500-01
Chr09	irgsp1_rep	mRNA	14583538	14586281	.	-	.	ID=Os09t0410700-00;Name=Os09t0410700-00;Locus_id=Os09g0410700;Oryzabase Gene Symbol Synonym(s)=OsbHLH039;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 039;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=AK368022 (DDBJ);ORF_evidence=Q6ESL3 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);Oryzabase=15330;TENOR=Os09t0410700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	14585871	14586281	.	-	0	Parent=Os09t0410700-00
Chr09	irgsp1_rep	CDS	14583906	14584586	.	-	0	Parent=Os09t0410700-00
Chr09	irgsp1_rep	three_prime_UTR	14583538	14583905	.	-	.	Parent=Os09t0410700-00
Chr09	irgsp1_rep	mRNA	14603214	14605119	.	+	.	ID=Os09t0411500-00;Name=Os09t0411500-00;Locus_id=Os09g0411500;Note=Similar to predicted protein.;Transcript_evidence=AK358914 (DDBJ);ORF_evidence=F2DHH0 (UniProt);TENOR=Os09t0411500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	14603214	14603301	.	+	0	Parent=Os09t0411500-00
Chr09	irgsp1_rep	CDS	14603380	14603458	.	+	2	Parent=Os09t0411500-00
Chr09	irgsp1_rep	CDS	14603535	14603680	.	+	1	Parent=Os09t0411500-00
Chr09	irgsp1_rep	CDS	14604349	14604374	.	+	2	Parent=Os09t0411500-00
Chr09	irgsp1_rep	three_prime_UTR	14604375	14604466	.	+	.	Parent=Os09t0411500-00
Chr09	irgsp1_rep	three_prime_UTR	14604587	14605119	.	+	.	Parent=Os09t0411500-00
Chr09	irgsp1_rep	mRNA	14603951	14607125	.	-	.	ID=Os09t0411600-01;Name=Os09t0411600-01;Locus_id=Os09g0411600;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK111456 (DDBJ%2C Best hit);ORF_evidence=A2Z165 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-183-C05;Expression=AK111456;TENOR=Os09t0411600-01;KEGG=Os09t0411600-01
Chr09	irgsp1_rep	five_prime_UTR	14607104	14607125	.	-	.	Parent=Os09t0411600-01
Chr09	irgsp1_rep	CDS	14605457	14607103	.	-	0	Parent=Os09t0411600-01
Chr09	irgsp1_rep	three_prime_UTR	14605242	14605456	.	-	.	Parent=Os09t0411600-01
Chr09	irgsp1_rep	three_prime_UTR	14604641	14604787	.	-	.	Parent=Os09t0411600-01
Chr09	irgsp1_rep	three_prime_UTR	14603951	14604448	.	-	.	Parent=Os09t0411600-01
Chr09	irgsp1_rep	mRNA	14607519	14609862	.	-	.	ID=Os09t0411650-01;Name=Os09t0411650-01;Locus_id=Os09g0411650;Oryzabase Gene Symbol Synonym(s)=OsSET36;Oryzabase Gene Name Synonym(s)=SET protein 36;Note=Similar to Ribulose-1%2C5 bisphosphate carboxylase/oxygenase large subunit N- methyltransferase%2C chloroplast precursor (EC 2.1.1.127) ([Ribulose- bisphosphate carboxylase]-lysine N-methyltransferase) (RuBisCO methyltransferase) (RuBisco LSMT) (rbcMT).;Transcript_evidence=AK243615 (DDBJ%2C Best hit);ORF_evidence=XP_002311320.1 (RefSeq);GO=Cellular Component: chloroplast (GO:0009507),Molecular Function: protein binding (GO:0005515),Molecular Function: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity (GO:0030785);InterPro=SET domain (IPR001214),Rubisco methyltransferase (IPR011192),Rubisco LS methyltransferase%2C substrate-binding domain (IPR015353);NIAS_FLcDNA=J100085N23;Oryzabase=13399;TENOR=Os09t0411650-01;KEGG=Os09t0411650-01 (EC:2.1.1.127)
Chr09	irgsp1_rep	five_prime_UTR	14609818	14609862	.	-	.	Parent=Os09t0411650-01
Chr09	irgsp1_rep	CDS	14609312	14609817	.	-	0	Parent=Os09t0411650-01
Chr09	irgsp1_rep	CDS	14609137	14609165	.	-	1	Parent=Os09t0411650-01
Chr09	irgsp1_rep	CDS	14608807	14609018	.	-	2	Parent=Os09t0411650-01
Chr09	irgsp1_rep	CDS	14608431	14608553	.	-	0	Parent=Os09t0411650-01
Chr09	irgsp1_rep	CDS	14607926	14608330	.	-	0	Parent=Os09t0411650-01
Chr09	irgsp1_rep	CDS	14607621	14607833	.	-	0	Parent=Os09t0411650-01
Chr09	irgsp1_rep	three_prime_UTR	14607519	14607620	.	-	.	Parent=Os09t0411650-01
Chr09	irgsp1_rep	mRNA	14607617	14609856	.	+	.	ID=Os09t0411675-00;Name=Os09t0411675-00;Locus_id=Os09g0411675;Note=Hypothetical protein.;Transcript_evidence=tplb0062k02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0411675-00
Chr09	irgsp1_rep	five_prime_UTR	14607617	14607829	.	+	.	Parent=Os09t0411675-00
Chr09	irgsp1_rep	five_prime_UTR	14607921	14608330	.	+	.	Parent=Os09t0411675-00
Chr09	irgsp1_rep	five_prime_UTR	14608431	14608556	.	+	.	Parent=Os09t0411675-00
Chr09	irgsp1_rep	five_prime_UTR	14608810	14609014	.	+	.	Parent=Os09t0411675-00
Chr09	irgsp1_rep	five_prime_UTR	14609280	14609283	.	+	.	Parent=Os09t0411675-00
Chr09	irgsp1_rep	CDS	14609284	14609856	.	+	0	Parent=Os09t0411675-00
Chr09	irgsp1_rep	mRNA	14610923	14613266	.	-	.	ID=Os09t0411700-01;Name=Os09t0411700-01;Locus_id=Os09g0411700;Note=Peptidyl-prolyl cis-trans isomerase%2C PpiC-type domain containing protein.;Transcript_evidence=AK121091 (DDBJ%2C Best hit);ORF_evidence=B6T401 (UniProt);GO=Molecular Function: isomerase activity (GO:0016853);InterPro=Peptidyl-prolyl cis-trans isomerase%2C PpiC-type (IPR000297);NIAS_FLcDNA=J023066F16;TENOR=Os09t0411700-01
Chr09	irgsp1_rep	five_prime_UTR	14613171	14613266	.	-	.	Parent=Os09t0411700-01
Chr09	irgsp1_rep	CDS	14613020	14613170	.	-	0	Parent=Os09t0411700-01
Chr09	irgsp1_rep	CDS	14612591	14612700	.	-	2	Parent=Os09t0411700-01
Chr09	irgsp1_rep	CDS	14611475	14611617	.	-	0	Parent=Os09t0411700-01
Chr09	irgsp1_rep	CDS	14611159	14611201	.	-	1	Parent=Os09t0411700-01
Chr09	irgsp1_rep	three_prime_UTR	14610923	14611158	.	-	.	Parent=Os09t0411700-01
Chr09	irgsp1_rep	mRNA	14610816	14613230	.	-	.	ID=Os09t0411700-02;Name=Os09t0411700-02;Locus_id=Os09g0411700;Note=Peptidyl-prolyl cis-trans isomerase%2C PpiC-type domain containing protein.;Transcript_evidence=AK058290 (DDBJ%2C Best hit);ORF_evidence=B6T401 (UniProt);GO=Molecular Function: isomerase activity (GO:0016853);InterPro=Peptidyl-prolyl cis-trans isomerase%2C PpiC-type (IPR000297);NIAS_FLcDNA=001-013-E07;Expression=AK058290;TENOR=Os09t0411700-02;KEGG=Os09t0411700-02 (EC:5.2.1.8)
Chr09	irgsp1_rep	five_prime_UTR	14613171	14613230	.	-	.	Parent=Os09t0411700-02
Chr09	irgsp1_rep	CDS	14613020	14613170	.	-	0	Parent=Os09t0411700-02
Chr09	irgsp1_rep	CDS	14612591	14612700	.	-	2	Parent=Os09t0411700-02
Chr09	irgsp1_rep	CDS	14611475	14611617	.	-	0	Parent=Os09t0411700-02
Chr09	irgsp1_rep	CDS	14611159	14611201	.	-	1	Parent=Os09t0411700-02
Chr09	irgsp1_rep	three_prime_UTR	14610816	14611158	.	-	.	Parent=Os09t0411700-02
Chr09	irgsp1_rep	mRNA	14610923	14613200	.	-	.	ID=Os09t0411700-03;Name=Os09t0411700-03;Locus_id=Os09g0411700;Note=Peptidyl-prolyl cis-trans isomerase%2C PpiC-type domain containing protein.;Transcript_evidence=AK104919 (DDBJ%2C Best hit);ORF_evidence=B6T401 (UniProt);GO=Molecular Function: isomerase activity (GO:0016853);InterPro=Peptidyl-prolyl cis-trans isomerase%2C PpiC-type (IPR000297);NIAS_FLcDNA=001-047-F11;TENOR=Os09t0411700-03
Chr09	irgsp1_rep	five_prime_UTR	14613171	14613200	.	-	.	Parent=Os09t0411700-03
Chr09	irgsp1_rep	CDS	14613020	14613170	.	-	0	Parent=Os09t0411700-03
Chr09	irgsp1_rep	CDS	14612591	14612700	.	-	2	Parent=Os09t0411700-03
Chr09	irgsp1_rep	CDS	14611475	14611617	.	-	0	Parent=Os09t0411700-03
Chr09	irgsp1_rep	CDS	14611159	14611201	.	-	1	Parent=Os09t0411700-03
Chr09	irgsp1_rep	three_prime_UTR	14610923	14611158	.	-	.	Parent=Os09t0411700-03
Chr09	irgsp1_rep	mRNA	14617481	14619069	.	-	.	ID=Os09t0411900-01;Name=Os09t0411900-01;Locus_id=Os09g0411900;CGSNL Gene Symbol=NAC108;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 108;Oryzabase Gene Symbol Synonym(s)=ONAC108;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 108;Note=Similar to NAC-domain containing protein 18 (ANAC018) (NO APICAL MERISTEM protein) (AtNAM).;Transcript_evidence=AK064191 (DDBJ%2C Best hit);ORF_evidence=A3BYR9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=002-104-C09;Oryzabase=15869;Expression=AK064191;TENOR=Os09t0411900-01;KEGG=Os09t0411900-01
Chr09	irgsp1_rep	five_prime_UTR	14619032	14619069	.	-	.	Parent=Os09t0411900-01
Chr09	irgsp1_rep	CDS	14618788	14619031	.	-	0	Parent=Os09t0411900-01
Chr09	irgsp1_rep	CDS	14618638	14618699	.	-	2	Parent=Os09t0411900-01
Chr09	irgsp1_rep	CDS	14618508	14618543	.	-	0	Parent=Os09t0411900-01
Chr09	irgsp1_rep	three_prime_UTR	14618457	14618507	.	-	.	Parent=Os09t0411900-01
Chr09	irgsp1_rep	three_prime_UTR	14618368	14618381	.	-	.	Parent=Os09t0411900-01
Chr09	irgsp1_rep	three_prime_UTR	14617481	14618265	.	-	.	Parent=Os09t0411900-01
Chr09	irgsp1_rep	mRNA	14625320	14626021	.	-	.	ID=Os09t0411975-00;Name=Os09t0411975-00;Locus_id=Os09g0411975;Note=Non-protein coding transcript.;Transcript_evidence=FP098967 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0411975-00
Chr09	irgsp1_rep	exon	14625320	14626021	.	-	.	Parent=Os09t0411975-00
Chr09	irgsp1_rep	mRNA	14628150	14628656	.	-	.	ID=Os09t0412050-00;Name=Os09t0412050-00;Locus_id=Os09g0412050;Note=Similar to Skp1-like protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6J4U1 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);InterPro=SKP1 component (IPR001232),BTB/POZ fold (IPR011333),SKP1 component%2C dimerisation (IPR016072),SKP1 component%2C POZ (IPR016073),E3 ubiquitin ligase%2C SCF complex%2C Skp subunit (IPR016897);TENOR=Os09t0412050-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	14628150	14628656	.	-	0	Parent=Os09t0412050-00
Chr09	irgsp1_rep	mRNA	14629693	14632859	.	-	.	ID=Os09t0412200-01;Name=Os09t0412200-01;Locus_id=Os09g0412200;Note=Protein of unknown function DUF246%2C plant family protein.;Transcript_evidence=AK066696 (DDBJ%2C Best hit);ORF_evidence=B6TM91 (UniProt);InterPro=GDP-fucose protein O-fucosyltransferase (IPR019378),O-fucosyltransferase%2C plant (IPR024709);NIAS_FLcDNA=J013073D17;Expression=AK066696;TENOR=Os09t0412200-01;KEGG=Os09t0412200-01
Chr09	irgsp1_rep	five_prime_UTR	14632807	14632859	.	-	.	Parent=Os09t0412200-01
Chr09	irgsp1_rep	CDS	14632669	14632806	.	-	0	Parent=Os09t0412200-01
Chr09	irgsp1_rep	CDS	14632304	14632366	.	-	0	Parent=Os09t0412200-01
Chr09	irgsp1_rep	CDS	14632149	14632230	.	-	0	Parent=Os09t0412200-01
Chr09	irgsp1_rep	CDS	14631997	14632067	.	-	2	Parent=Os09t0412200-01
Chr09	irgsp1_rep	CDS	14631808	14631896	.	-	0	Parent=Os09t0412200-01
Chr09	irgsp1_rep	CDS	14631517	14631720	.	-	1	Parent=Os09t0412200-01
Chr09	irgsp1_rep	CDS	14630948	14631203	.	-	1	Parent=Os09t0412200-01
Chr09	irgsp1_rep	CDS	14630621	14630848	.	-	0	Parent=Os09t0412200-01
Chr09	irgsp1_rep	CDS	14630348	14630545	.	-	0	Parent=Os09t0412200-01
Chr09	irgsp1_rep	CDS	14630058	14630267	.	-	0	Parent=Os09t0412200-01
Chr09	irgsp1_rep	three_prime_UTR	14629693	14630057	.	-	.	Parent=Os09t0412200-01
Chr09	irgsp1_rep	mRNA	14635406	14636242	.	-	.	ID=Os09t0412300-01;Name=Os09t0412300-01;Locus_id=Os09g0412300;Note=Similar to Calmodulin-like protein.;Transcript_evidence=AK243313 (DDBJ%2C Best hit);ORF_evidence=B6TXW9 (UniProt);NIAS_FLcDNA=J100056E21;TENOR=Os09t0412300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	14636122	14636242	.	-	.	Parent=Os09t0412300-01
Chr09	irgsp1_rep	CDS	14635828	14636121	.	-	0	Parent=Os09t0412300-01
Chr09	irgsp1_rep	three_prime_UTR	14635406	14635827	.	-	.	Parent=Os09t0412300-01
Chr09	irgsp1_rep	mRNA	14635682	14636083	.	+	.	ID=Os09t0412350-00;Name=Os09t0412350-00;Locus_id=Os09g0412350;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os09t0412350-00;KEGG=Os09t0412350-00
Chr09	irgsp1_rep	CDS	14635682	14636083	.	+	0	Parent=Os09t0412350-00
Chr09	irgsp1_rep	mRNA	14649378	14650175	.	-	.	ID=Os09t0412400-01;Name=Os09t0412400-01;Locus_id=Os09g0412400;Note=Conserved hypothetical protein.;Transcript_evidence=AK073672 (DDBJ%2C Best hit);ORF_evidence=A2Z170 (UniProt);NIAS_FLcDNA=J033054E07;Expression=AK073672;TENOR=Os09t0412400-01;KEGG=Os09t0412400-01
Chr09	irgsp1_rep	five_prime_UTR	14650159	14650175	.	-	.	Parent=Os09t0412400-01
Chr09	irgsp1_rep	CDS	14650089	14650158	.	-	0	Parent=Os09t0412400-01
Chr09	irgsp1_rep	CDS	14649797	14649978	.	-	2	Parent=Os09t0412400-01
Chr09	irgsp1_rep	three_prime_UTR	14649378	14649796	.	-	.	Parent=Os09t0412400-01
Chr09	irgsp1_rep	mRNA	14659942	14661222	.	+	.	ID=Os09t0412700-01;Name=Os09t0412700-01;Locus_id=Os09g0412700;Note=Conserved hypothetical protein.;Transcript_evidence=AK062405 (DDBJ%2C Best hit);ORF_evidence=A3BYS3 (UniProt);NIAS_FLcDNA=001-102-E07;Expression=AK062405;TENOR=Os09t0412700-01;KEGG=Os09t0412700-01
Chr09	irgsp1_rep	five_prime_UTR	14659942	14660023	.	+	.	Parent=Os09t0412700-01
Chr09	irgsp1_rep	CDS	14660024	14660129	.	+	0	Parent=Os09t0412700-01
Chr09	irgsp1_rep	CDS	14660238	14660308	.	+	2	Parent=Os09t0412700-01
Chr09	irgsp1_rep	CDS	14660892	14661020	.	+	0	Parent=Os09t0412700-01
Chr09	irgsp1_rep	three_prime_UTR	14661021	14661222	.	+	.	Parent=Os09t0412700-01
Chr09	irgsp1_rep	mRNA	14666247	14667786	.	+	.	ID=Os09t0412900-01;Name=Os09t0412900-01;Locus_id=Os09g0412900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK102254 (DDBJ%2C Best hit),AK102867 (DDBJ%2C Best hit);ORF_evidence=NP_001148280.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033088H22,J033111M02;Expression=AK102254;TENOR=Os09t0412900-01;KEGG=Os09t0412900-01
Chr09	irgsp1_rep	five_prime_UTR	14666247	14666272	.	+	.	Parent=Os09t0412900-01
Chr09	irgsp1_rep	CDS	14666273	14667784	.	+	0	Parent=Os09t0412900-01
Chr09	irgsp1_rep	three_prime_UTR	14667785	14667786	.	+	.	Parent=Os09t0412900-01
Chr09	irgsp1_rep	mRNA	14675596	14676702	.	+	.	ID=Os09t0413000-01;Name=Os09t0413000-01;Locus_id=Os09g0413000;Note=Similar to Protein binding protein.;Transcript_evidence=AK062467 (DDBJ%2C Best hit);ORF_evidence=B6TQI1 (UniProt);InterPro=Protein of unknown function DUF3675 (IPR022143);NIAS_FLcDNA=001-103-E03;TENOR=Os09t0413000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	14675596	14675613	.	+	.	Parent=Os09t0413000-01
Chr09	irgsp1_rep	CDS	14675614	14675622	.	+	0	Parent=Os09t0413000-01
Chr09	irgsp1_rep	CDS	14675716	14675805	.	+	0	Parent=Os09t0413000-01
Chr09	irgsp1_rep	CDS	14676198	14676320	.	+	0	Parent=Os09t0413000-01
Chr09	irgsp1_rep	three_prime_UTR	14676321	14676702	.	+	.	Parent=Os09t0413000-01
Chr09	irgsp1_rep	mRNA	14677541	14678823	.	-	.	ID=Os09t0413100-01;Name=Os09t0413100-01;Locus_id=Os09g0413100;Note=Conserved hypothetical protein.;Transcript_evidence=AK062649 (DDBJ%2C Best hit);ORF_evidence=A3BYS6 (UniProt);NIAS_FLcDNA=001-105-E05;TENOR=Os09t0413100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	14678740	14678823	.	-	0	Parent=Os09t0413100-01
Chr09	irgsp1_rep	CDS	14678225	14678323	.	-	0	Parent=Os09t0413100-01
Chr09	irgsp1_rep	CDS	14677776	14678126	.	-	0	Parent=Os09t0413100-01
Chr09	irgsp1_rep	three_prime_UTR	14677541	14677775	.	-	.	Parent=Os09t0413100-01
Chr09	irgsp1_rep	mRNA	14680809	14684468	.	+	.	ID=Os09t0413200-01;Name=Os09t0413200-01;Locus_id=Os09g0413200;Note=Similar to CAAX amino terminal protease family protein.;Transcript_evidence=AK069925 (DDBJ%2C Best hit);ORF_evidence=B6T405 (UniProt);NIAS_FLcDNA=J023036B16;TENOR=Os09t0413200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	14680809	14680854	.	+	.	Parent=Os09t0413200-01
Chr09	irgsp1_rep	CDS	14680855	14681118	.	+	0	Parent=Os09t0413200-01
Chr09	irgsp1_rep	CDS	14681396	14681484	.	+	0	Parent=Os09t0413200-01
Chr09	irgsp1_rep	CDS	14681719	14681746	.	+	1	Parent=Os09t0413200-01
Chr09	irgsp1_rep	three_prime_UTR	14681747	14681830	.	+	.	Parent=Os09t0413200-01
Chr09	irgsp1_rep	three_prime_UTR	14681940	14682022	.	+	.	Parent=Os09t0413200-01
Chr09	irgsp1_rep	three_prime_UTR	14682309	14683244	.	+	.	Parent=Os09t0413200-01
Chr09	irgsp1_rep	three_prime_UTR	14683335	14683427	.	+	.	Parent=Os09t0413200-01
Chr09	irgsp1_rep	three_prime_UTR	14683548	14683639	.	+	.	Parent=Os09t0413200-01
Chr09	irgsp1_rep	three_prime_UTR	14683930	14684036	.	+	.	Parent=Os09t0413200-01
Chr09	irgsp1_rep	three_prime_UTR	14684260	14684468	.	+	.	Parent=Os09t0413200-01
Chr09	irgsp1_rep	mRNA	14686187	14690226	.	-	.	ID=Os09t0413300-00;Name=Os09t0413300-00;Locus_id=Os09g0413300;CGSNL Gene Symbol=PPR1;CGSNL Gene Name=PENTATRICOPEPTIDE REPEAT PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsPPR1%2C rPPR1;Oryzabase Gene Name Synonym(s)=pentatricopeptide repeat protein gene-1;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK334615 (DDBJ);ORF_evidence=Q6PRD0 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);Oryzabase=6269;TENOR=Os09t0413300-00;KEGG=Os09t0413300-00
Chr09	irgsp1_rep	five_prime_UTR	14690181	14690226	.	-	.	Parent=Os09t0413300-00
Chr09	irgsp1_rep	CDS	14687748	14690180	.	-	0	Parent=Os09t0413300-00
Chr09	irgsp1_rep	three_prime_UTR	14687724	14687747	.	-	.	Parent=Os09t0413300-00
Chr09	irgsp1_rep	three_prime_UTR	14686187	14687235	.	-	.	Parent=Os09t0413300-00
Chr09	irgsp1_rep	mRNA	14691187	14693114	.	-	.	ID=Os09t0413500-01;Name=Os09t0413500-01;Locus_id=Os09g0413500;CGSNL Gene Symbol=RPL34;CGSNL Gene Name=RIBOSOMAL PROTEIN L34;Oryzabase Gene Symbol Synonym(s)=OsRPL34;Oryzabase Gene Name Synonym(s)=ribosomal protein L34%2C ribosomal protein large subunit 34;Note=Similar to 60S ribosomal protein L34.;Transcript_evidence=AK059470 (DDBJ%2C Best hit);ORF_evidence=B4FGQ6 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L34Ae (IPR008195);NIAS_FLcDNA=001-028-D12;Oryzabase=22203;Expression=AK059470;TENOR=Os09t0413500-01;KEGG=Os09t0413500-01
Chr09	irgsp1_rep	five_prime_UTR	14692979	14693114	.	-	.	Parent=Os09t0413500-01
Chr09	irgsp1_rep	CDS	14692953	14692978	.	-	0	Parent=Os09t0413500-01
Chr09	irgsp1_rep	CDS	14691599	14691670	.	-	1	Parent=Os09t0413500-01
Chr09	irgsp1_rep	CDS	14691424	14691514	.	-	1	Parent=Os09t0413500-01
Chr09	irgsp1_rep	three_prime_UTR	14691187	14691423	.	-	.	Parent=Os09t0413500-01
Chr09	irgsp1_rep	mRNA	14691187	14691489	.	-	.	ID=Os09t0413500-02;Name=Os09t0413500-02;Locus_id=Os09g0413500;CGSNL Gene Symbol=RPL34;CGSNL Gene Name=RIBOSOMAL PROTEIN L34;Oryzabase Gene Symbol Synonym(s)=OsRPL34;Oryzabase Gene Name Synonym(s)=ribosomal protein L34%2C ribosomal protein large subunit 34;Note=Non-protein coding transcript.;Transcript_evidence=AK059401 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-027-B04;Oryzabase=22203;TENOR=Os09t0413500-02
Chr09	irgsp1_rep	exon	14691187	14691489	.	-	.	Parent=Os09t0413500-02
Chr09	irgsp1_rep	mRNA	14694461	14699068	.	-	.	ID=Os09t0413600-01;Name=Os09t0413600-01;Locus_id=Os09g0413600;Note=Ribosomal protein L34e domain containing protein.;Transcript_evidence=AK065194 (DDBJ%2C Best hit);ORF_evidence=XP_002462377.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L34Ae (IPR008195),Protein of unknown function DUF1666 (IPR012870);NIAS_FLcDNA=J013002E13;Expression=AK065194;TENOR=Os09t0413600-01;KEGG=Os09t0413600-01
Chr09	irgsp1_rep	five_prime_UTR	14698745	14699068	.	-	.	Parent=Os09t0413600-01
Chr09	irgsp1_rep	CDS	14698578	14698744	.	-	0	Parent=Os09t0413600-01
Chr09	irgsp1_rep	CDS	14696132	14698482	.	-	1	Parent=Os09t0413600-01
Chr09	irgsp1_rep	CDS	14695456	14695866	.	-	2	Parent=Os09t0413600-01
Chr09	irgsp1_rep	CDS	14695123	14695352	.	-	2	Parent=Os09t0413600-01
Chr09	irgsp1_rep	CDS	14694748	14694999	.	-	0	Parent=Os09t0413600-01
Chr09	irgsp1_rep	three_prime_UTR	14694461	14694747	.	-	.	Parent=Os09t0413600-01
Chr09	irgsp1_rep	mRNA	14695894	14698940	.	-	.	ID=Os09t0413600-02;Name=Os09t0413600-02;Locus_id=Os09g0413600;Note=Hypothetical conserved gene.;Transcript_evidence=AK107000 (DDBJ%2C Best hit);ORF_evidence=Q6ES33 (UniProt);NIAS_FLcDNA=002-120-C03;Expression=AK107000;TENOR=Os09t0413600-02;KEGG=Os09t0413600-02
Chr09	irgsp1_rep	five_prime_UTR	14698745	14698940	.	-	.	Parent=Os09t0413600-02
Chr09	irgsp1_rep	CDS	14698578	14698744	.	-	0	Parent=Os09t0413600-02
Chr09	irgsp1_rep	CDS	14698028	14698482	.	-	1	Parent=Os09t0413600-02
Chr09	irgsp1_rep	CDS	14696067	14697676	.	-	2	Parent=Os09t0413600-02
Chr09	irgsp1_rep	three_prime_UTR	14695894	14696066	.	-	.	Parent=Os09t0413600-02
Chr09	irgsp1_rep	mRNA	14711584	14716550	.	+	.	ID=Os09t0413700-01;Name=Os09t0413700-01;Locus_id=Os09g0413700;Note=Conserved hypothetical protein.;Transcript_evidence=AK061445 (DDBJ%2C Best hit);ORF_evidence=Q6ES31 (UniProt);NIAS_FLcDNA=006-307-D06;Expression=AK061445;TENOR=Os09t0413700-01;KEGG=Os09t0413700-01
Chr09	irgsp1_rep	five_prime_UTR	14711584	14711670	.	+	.	Parent=Os09t0413700-01
Chr09	irgsp1_rep	CDS	14711671	14711844	.	+	0	Parent=Os09t0413700-01
Chr09	irgsp1_rep	CDS	14713691	14714006	.	+	0	Parent=Os09t0413700-01
Chr09	irgsp1_rep	CDS	14714379	14714538	.	+	2	Parent=Os09t0413700-01
Chr09	irgsp1_rep	CDS	14715916	14716083	.	+	1	Parent=Os09t0413700-01
Chr09	irgsp1_rep	CDS	14716358	14716550	.	+	1	Parent=Os09t0413700-01
Chr09	irgsp1_rep	mRNA	14711653	14716550	.	+	.	ID=Os09t0413700-02;Name=Os09t0413700-02;Locus_id=Os09g0413700;Note=Similar to predicted protein.;Transcript_evidence=AK065233 (DDBJ%2C Best hit);ORF_evidence=Q6ES31 (UniProt);NIAS_FLcDNA=J013002H15;Expression=AK065233;TENOR=Os09t0413700-02;KEGG=Os09t0413700-02
Chr09	irgsp1_rep	five_prime_UTR	14711653	14711670	.	+	.	Parent=Os09t0413700-02
Chr09	irgsp1_rep	CDS	14711671	14711844	.	+	0	Parent=Os09t0413700-02
Chr09	irgsp1_rep	CDS	14713691	14714006	.	+	0	Parent=Os09t0413700-02
Chr09	irgsp1_rep	CDS	14714379	14714538	.	+	2	Parent=Os09t0413700-02
Chr09	irgsp1_rep	CDS	14715916	14716184	.	+	1	Parent=Os09t0413700-02
Chr09	irgsp1_rep	CDS	14716251	14716384	.	+	2	Parent=Os09t0413700-02
Chr09	irgsp1_rep	three_prime_UTR	14716385	14716550	.	+	.	Parent=Os09t0413700-02
Chr09	irgsp1_rep	mRNA	14776558	14776969	.	+	.	ID=Os09t0414300-00;Name=Os09t0414300-00;Locus_id=Os09g0414300;Note=Non-protein coding transcript.;Transcript_evidence=CT835888 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os09t0414300-00
Chr09	irgsp1_rep	exon	14776558	14776969	.	+	.	Parent=Os09t0414300-00
Chr09	irgsp1_rep	mRNA	14793742	14794393	.	+	.	ID=Os09t0414500-01;Name=Os09t0414500-01;Locus_id=Os09g0414500;Note=Similar to ZF-HD homeobox protein.;Transcript_evidence=AK058840 (DDBJ%2C Best hit);ORF_evidence=NP_001152181.1 (RefSeq);InterPro=ZF-HD homeobox protein%2C Cys/His-rich dimerisation domain (IPR006456);NIAS_FLcDNA=001-004-D10;Expression=AK058840;TENOR=Os09t0414500-01;KEGG=Os09t0414500-01
Chr09	irgsp1_rep	five_prime_UTR	14793742	14793812	.	+	.	Parent=Os09t0414500-01
Chr09	irgsp1_rep	CDS	14793813	14794154	.	+	0	Parent=Os09t0414500-01
Chr09	irgsp1_rep	three_prime_UTR	14794155	14794393	.	+	.	Parent=Os09t0414500-01
Chr09	irgsp1_rep	mRNA	14813684	14816389	.	-	.	ID=Os09t0414600-01;Name=Os09t0414600-01;Locus_id=Os09g0414600;Oryzabase Gene Symbol Synonym(s)=OsZHD9;Oryzabase Gene Name Synonym(s)=zinc finger homeodomain class homeobox transcription factor 9;Note=Conserved hypothetical protein.;Transcript_evidence=AK289103 (DDBJ%2C Best hit);ORF_evidence=A2X5Q0 (UniProt);NIAS_FLcDNA=J090096G10;Oryzabase=15622;TENOR=Os09t0414600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	14816109	14816389	.	-	.	Parent=Os09t0414600-01
Chr09	irgsp1_rep	CDS	14815905	14816108	.	-	0	Parent=Os09t0414600-01
Chr09	irgsp1_rep	three_prime_UTR	14813684	14815904	.	-	.	Parent=Os09t0414600-01
Chr09	irgsp1_rep	mRNA	14812210	14813725	.	-	.	ID=Os09t0414600-02;Name=Os09t0414600-02;Locus_id=Os09g0414600;Oryzabase Gene Symbol Synonym(s)=OsZHD9;Oryzabase Gene Name Synonym(s)=zinc finger homeodomain class homeobox transcription factor 9;Note=Similar to ZF-HD homeobox protein (Fragment).;Transcript_evidence=AK069500 (DDBJ%2C Best hit);ORF_evidence=NP_001150690.1 (RefSeq);InterPro=ZF-HD homeobox protein%2C Cys/His-rich dimerisation domain (IPR006456);NIAS_FLcDNA=J023022H01;Oryzabase=15622;Expression=AK069500;TENOR=Os09t0414600-02;KEGG=Os09t0414600-02
Chr09	irgsp1_rep	five_prime_UTR	14813624	14813725	.	-	.	Parent=Os09t0414600-02
Chr09	irgsp1_rep	CDS	14813352	14813623	.	-	0	Parent=Os09t0414600-02
Chr09	irgsp1_rep	CDS	14813062	14813119	.	-	1	Parent=Os09t0414600-02
Chr09	irgsp1_rep	three_prime_UTR	14812210	14813061	.	-	.	Parent=Os09t0414600-02
Chr09	irgsp1_rep	mRNA	14812756	14813623	.	+	.	ID=Os09t0414701-00;Name=Os09t0414701-00;Locus_id=Os09g0414701;Note=Hypothetical protein.;Transcript_evidence=EU946376 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0414701-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	14812756	14812756	.	+	.	Parent=Os09t0414701-00
Chr09	irgsp1_rep	CDS	14812757	14813623	.	+	0	Parent=Os09t0414701-00
Chr09	irgsp1_rep	mRNA	14828981	14830515	.	+	.	ID=Os09t0414900-01;Name=Os09t0414900-01;Locus_id=Os09g0414900;Note=Similar to GASA5-like protein (Fragment).;Transcript_evidence=AK059073 (DDBJ%2C Best hit);ORF_evidence=Q0VYL5 (UniProt);InterPro=Gibberellin regulated protein (IPR003854);NIAS_FLcDNA=001-021-H09;Expression=AK059073;TENOR=Os09t0414900-01;KEGG=Os09t0414900-01
Chr09	irgsp1_rep	five_prime_UTR	14828981	14829107	.	+	.	Parent=Os09t0414900-01
Chr09	irgsp1_rep	CDS	14829108	14829179	.	+	0	Parent=Os09t0414900-01
Chr09	irgsp1_rep	CDS	14829288	14829344	.	+	0	Parent=Os09t0414900-01
Chr09	irgsp1_rep	CDS	14829454	14829481	.	+	0	Parent=Os09t0414900-01
Chr09	irgsp1_rep	CDS	14830104	14830285	.	+	2	Parent=Os09t0414900-01
Chr09	irgsp1_rep	three_prime_UTR	14830286	14830515	.	+	.	Parent=Os09t0414900-01
Chr09	irgsp1_rep	mRNA	14834613	14839357	.	-	.	ID=Os09t0415050-01;Name=Os09t0415050-01;Locus_id=Os09g0415050;Note=Hypothetical gene.;Transcript_evidence=AK287474 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J043022N04;TENOR=Os09t0415050-01;KEGG=Os09t0415050-01
Chr09	irgsp1_rep	five_prime_UTR	14838464	14839357	.	-	.	Parent=Os09t0415050-01
Chr09	irgsp1_rep	CDS	14838014	14838463	.	-	0	Parent=Os09t0415050-01
Chr09	irgsp1_rep	three_prime_UTR	14834613	14838013	.	-	.	Parent=Os09t0415050-01
Chr09	irgsp1_rep	mRNA	14843939	14847953	.	-	.	ID=Os09t0415300-01;Name=Os09t0415300-01;Locus_id=Os09g0415300;Note=Hypothetical conserved gene.;Transcript_evidence=AK288148 (DDBJ%2C Best hit);ORF_evidence=NP_001175837.1 (RefSeq);NIAS_FLcDNA=J080315E21;TENOR=Os09t0415300-01;KEGG=Os09t0415300-01
Chr09	irgsp1_rep	five_prime_UTR	14847845	14847953	.	-	.	Parent=Os09t0415300-01
Chr09	irgsp1_rep	CDS	14847471	14847844	.	-	0	Parent=Os09t0415300-01
Chr09	irgsp1_rep	CDS	14846706	14847092	.	-	1	Parent=Os09t0415300-01
Chr09	irgsp1_rep	CDS	14844150	14844939	.	-	1	Parent=Os09t0415300-01
Chr09	irgsp1_rep	three_prime_UTR	14843939	14844149	.	-	.	Parent=Os09t0415300-01
Chr09	irgsp1_rep	mRNA	14849746	14850898	.	+	.	ID=Os09t0415400-01;Name=Os09t0415400-01;Locus_id=Os09g0415400;Note=Hypothetical protein.;Transcript_evidence=AK119737 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=002-163-D08;TENOR=Os09t0415400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	14849746	14850048	.	+	0	Parent=Os09t0415400-01
Chr09	irgsp1_rep	three_prime_UTR	14850049	14850898	.	+	.	Parent=Os09t0415400-01
Chr09	irgsp1_rep	mRNA	14867389	14870846	.	+	.	ID=Os09t0415700-01;Name=Os09t0415700-01;Locus_id=Os09g0415700;Note=Protein of unknown function DUF248%2C methyltransferase putative family protein.;Transcript_evidence=AK102287 (DDBJ%2C Best hit);ORF_evidence=NP_001152470.1 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Protein of unknown function DUF248%2C methyltransferase putative (IPR004159);NIAS_FLcDNA=J033089J21;Expression=AK102287;TENOR=Os09t0415700-01;KEGG=Os09t0415700-01
Chr09	irgsp1_rep	five_prime_UTR	14867389	14867627	.	+	.	Parent=Os09t0415700-01
Chr09	irgsp1_rep	five_prime_UTR	14868112	14868122	.	+	.	Parent=Os09t0415700-01
Chr09	irgsp1_rep	CDS	14868123	14868764	.	+	0	Parent=Os09t0415700-01
Chr09	irgsp1_rep	CDS	14868845	14869055	.	+	0	Parent=Os09t0415700-01
Chr09	irgsp1_rep	CDS	14869203	14869497	.	+	2	Parent=Os09t0415700-01
Chr09	irgsp1_rep	CDS	14869710	14870099	.	+	1	Parent=Os09t0415700-01
Chr09	irgsp1_rep	CDS	14870179	14870256	.	+	1	Parent=Os09t0415700-01
Chr09	irgsp1_rep	CDS	14870343	14870577	.	+	1	Parent=Os09t0415700-01
Chr09	irgsp1_rep	three_prime_UTR	14870578	14870846	.	+	.	Parent=Os09t0415700-01
Chr09	irgsp1_rep	mRNA	14868118	14870584	.	-	.	ID=Os09t0415750-00;Name=Os09t0415750-00;Locus_id=Os09g0415750;Note=Hypothetical protein.;Transcript_evidence=tplb0038j22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0415750-00
Chr09	irgsp1_rep	five_prime_UTR	14870350	14870584	.	-	.	Parent=Os09t0415750-00
Chr09	irgsp1_rep	five_prime_UTR	14870169	14870264	.	-	.	Parent=Os09t0415750-00
Chr09	irgsp1_rep	five_prime_UTR	14869737	14870096	.	-	.	Parent=Os09t0415750-00
Chr09	irgsp1_rep	five_prime_UTR	14869214	14869503	.	-	.	Parent=Os09t0415750-00
Chr09	irgsp1_rep	five_prime_UTR	14868837	14869067	.	-	.	Parent=Os09t0415750-00
Chr09	irgsp1_rep	five_prime_UTR	14868471	14868757	.	-	.	Parent=Os09t0415750-00
Chr09	irgsp1_rep	CDS	14868174	14868470	.	-	0	Parent=Os09t0415750-00
Chr09	irgsp1_rep	three_prime_UTR	14868118	14868173	.	-	.	Parent=Os09t0415750-00
Chr09	irgsp1_rep	mRNA	14870986	14878129	.	-	.	ID=Os09t0415800-01;Name=Os09t0415800-01;Locus_id=Os09g0415800;Oryzabase Gene Symbol Synonym(s)=OsPFK08%2C PFK08%2C PFK8;Oryzabase Gene Name Synonym(s)=phosphofructokinase 8;Note=Phosphofructokinase family protein.;Transcript_evidence=AK071371 (DDBJ%2C Best hit);ORF_evidence=NP_001147085.1 (RefSeq);GO=Biological Process: glycolysis (GO:0006096),Cellular Component: 6-phosphofructokinase complex (GO:0005945),Molecular Function: 6-phosphofructokinase activity (GO:0003872),Molecular Function: ATP binding (GO:0005524);InterPro=Phosphofructokinase domain (IPR000023),Pyrophosphate-dependent phosphofructokinase TP0108 (IPR012004),Phosphofructokinase (IPR022953);NIAS_FLcDNA=J023097L09;Oryzabase=19616;Expression=AK071371;TENOR=Os09t0415800-01;KEGG=Os09t0415800-01 (EC:2.7.1.11)
Chr09	irgsp1_rep	five_prime_UTR	14878053	14878129	.	-	.	Parent=Os09t0415800-01
Chr09	irgsp1_rep	five_prime_UTR	14875788	14875803	.	-	.	Parent=Os09t0415800-01
Chr09	irgsp1_rep	CDS	14875477	14875787	.	-	0	Parent=Os09t0415800-01
Chr09	irgsp1_rep	CDS	14875299	14875371	.	-	1	Parent=Os09t0415800-01
Chr09	irgsp1_rep	CDS	14874809	14874882	.	-	0	Parent=Os09t0415800-01
Chr09	irgsp1_rep	CDS	14874489	14874600	.	-	1	Parent=Os09t0415800-01
Chr09	irgsp1_rep	CDS	14873969	14874064	.	-	0	Parent=Os09t0415800-01
Chr09	irgsp1_rep	CDS	14873786	14873887	.	-	0	Parent=Os09t0415800-01
Chr09	irgsp1_rep	CDS	14873616	14873690	.	-	0	Parent=Os09t0415800-01
Chr09	irgsp1_rep	CDS	14872986	14873126	.	-	0	Parent=Os09t0415800-01
Chr09	irgsp1_rep	CDS	14872788	14872904	.	-	0	Parent=Os09t0415800-01
Chr09	irgsp1_rep	CDS	14872594	14872698	.	-	0	Parent=Os09t0415800-01
Chr09	irgsp1_rep	CDS	14872395	14872475	.	-	0	Parent=Os09t0415800-01
Chr09	irgsp1_rep	CDS	14871517	14871645	.	-	0	Parent=Os09t0415800-01
Chr09	irgsp1_rep	CDS	14871238	14871405	.	-	0	Parent=Os09t0415800-01
Chr09	irgsp1_rep	three_prime_UTR	14870986	14871237	.	-	.	Parent=Os09t0415800-01
Chr09	irgsp1_rep	mRNA	14887140	14893226	.	+	.	ID=Os09t0416200-01;Name=Os09t0416200-01;Locus_id=Os09g0416200;Note=Similar to Glucose transporter (Fragment).;Transcript_evidence=AK065807 (DDBJ%2C Best hit);ORF_evidence=B6TMZ9 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J013037F14;Expression=AK065807;TENOR=Os09t0416200-01;KEGG=Os09t0416200-01
Chr09	irgsp1_rep	five_prime_UTR	14887140	14887236	.	+	.	Parent=Os09t0416200-01
Chr09	irgsp1_rep	CDS	14887237	14887381	.	+	0	Parent=Os09t0416200-01
Chr09	irgsp1_rep	CDS	14891281	14891600	.	+	2	Parent=Os09t0416200-01
Chr09	irgsp1_rep	CDS	14891689	14892315	.	+	0	Parent=Os09t0416200-01
Chr09	irgsp1_rep	CDS	14892567	14893010	.	+	0	Parent=Os09t0416200-01
Chr09	irgsp1_rep	three_prime_UTR	14893011	14893226	.	+	.	Parent=Os09t0416200-01
Chr09	irgsp1_rep	mRNA	14887230	14892974	.	-	.	ID=Os09t0416250-00;Name=Os09t0416250-00;Locus_id=Os09g0416250;Note=Hypothetical gene.;Transcript_evidence=tplb0053a05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0416250-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	14892968	14892974	.	-	.	Parent=Os09t0416250-00
Chr09	irgsp1_rep	CDS	14892626	14892967	.	-	0	Parent=Os09t0416250-00
Chr09	irgsp1_rep	three_prime_UTR	14892557	14892625	.	-	.	Parent=Os09t0416250-00
Chr09	irgsp1_rep	three_prime_UTR	14891686	14892308	.	-	.	Parent=Os09t0416250-00
Chr09	irgsp1_rep	three_prime_UTR	14891270	14891597	.	-	.	Parent=Os09t0416250-00
Chr09	irgsp1_rep	three_prime_UTR	14887230	14887376	.	-	.	Parent=Os09t0416250-00
Chr09	irgsp1_rep	mRNA	14896175	14901389	.	+	.	ID=Os09t0416500-01;Name=Os09t0416500-01;Locus_id=Os09g0416500;Note=Hypothetical conserved gene.;Transcript_evidence=AK242007 (DDBJ%2C Best hit);ORF_evidence=B8BF88 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: RNA binding (GO:0003723),Molecular Function: double-stranded RNA binding (GO:0003725);InterPro=Double-stranded RNA-binding (IPR001159),Double-stranded RNA-binding-like (IPR014720);NIAS_FLcDNA=J075104N21;TENOR=Os09t0416500-01;KEGG=Os09t0416500-01
Chr09	irgsp1_rep	five_prime_UTR	14896175	14896295	.	+	.	Parent=Os09t0416500-01
Chr09	irgsp1_rep	five_prime_UTR	14896381	14896392	.	+	.	Parent=Os09t0416500-01
Chr09	irgsp1_rep	CDS	14896393	14896473	.	+	0	Parent=Os09t0416500-01
Chr09	irgsp1_rep	CDS	14896616	14896814	.	+	0	Parent=Os09t0416500-01
Chr09	irgsp1_rep	CDS	14899923	14900034	.	+	2	Parent=Os09t0416500-01
Chr09	irgsp1_rep	CDS	14900935	14901085	.	+	1	Parent=Os09t0416500-01
Chr09	irgsp1_rep	three_prime_UTR	14901086	14901389	.	+	.	Parent=Os09t0416500-01
Chr09	irgsp1_rep	mRNA	14913261	14916186	.	-	.	ID=Os09t0416501-01;Name=Os09t0416501-01;Locus_id=Os09g0416501;Note=Conserved hypothetical protein.;Transcript_evidence=AK242825 (DDBJ%2C Best hit);ORF_evidence=NP_001175838.1 (RefSeq);NIAS_FLcDNA=J090067B01;TENOR=Os09t0416501-01;KEGG=Os09t0416501-01
Chr09	irgsp1_rep	five_prime_UTR	14913831	14916186	.	-	.	Parent=Os09t0416501-01
Chr09	irgsp1_rep	CDS	14913513	14913830	.	-	0	Parent=Os09t0416501-01
Chr09	irgsp1_rep	three_prime_UTR	14913261	14913512	.	-	.	Parent=Os09t0416501-01
Chr09	irgsp1_rep	mRNA	14917136	14918733	.	+	.	ID=Os09t0416600-01;Name=Os09t0416600-01;Locus_id=Os09g0416600;Note=Conserved hypothetical protein.;Transcript_evidence=AK101668 (DDBJ%2C Best hit);ORF_evidence=Q6EQ09 (UniProt);NIAS_FLcDNA=J033058C01;TENOR=Os09t0416600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	14917136	14917253	.	+	.	Parent=Os09t0416600-01
Chr09	irgsp1_rep	CDS	14917254	14917549	.	+	0	Parent=Os09t0416600-01
Chr09	irgsp1_rep	CDS	14917866	14918508	.	+	1	Parent=Os09t0416600-01
Chr09	irgsp1_rep	three_prime_UTR	14918509	14918733	.	+	.	Parent=Os09t0416600-01
Chr09	irgsp1_rep	mRNA	14917136	14918733	.	+	.	ID=Os09t0416600-02;Name=Os09t0416600-02;Locus_id=Os09g0416600;Note=Protein of unknown function DUF868%2C plant family protein.;Transcript_evidence=AK106445 (DDBJ%2C Best hit);ORF_evidence=A3BYV0 (UniProt);InterPro=Protein of unknown function DUF868%2C plant (IPR008586);NIAS_FLcDNA=002-103-E02;Expression=AK106445;TENOR=Os09t0416600-02;KEGG=Os09t0416600-02
Chr09	irgsp1_rep	five_prime_UTR	14917136	14917253	.	+	.	Parent=Os09t0416600-02
Chr09	irgsp1_rep	CDS	14917254	14918588	.	+	0	Parent=Os09t0416600-02
Chr09	irgsp1_rep	three_prime_UTR	14918589	14918733	.	+	.	Parent=Os09t0416600-02
Chr09	irgsp1_rep	mRNA	14921694	14926292	.	-	.	ID=Os09t0416700-01;Name=Os09t0416700-01;Locus_id=Os09g0416700;Note=Vesicle transport v-SNARE family protein.;Transcript_evidence=AK061283 (DDBJ%2C Best hit),AK101300 (DDBJ%2C Best hit);ORF_evidence=NP_001151079.1 (RefSeq);GO=Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888),Cellular Component: Golgi membrane (GO:0000139),Cellular Component: cis-Golgi network (GO:0005801),Cellular Component: integral to membrane (GO:0016021);InterPro=Golgi SNAP receptor complex%2C subunit 1 (IPR023601);NIAS_FLcDNA=006-212-G01,J033033J17;Expression=AK061283;TENOR=Os09t0416700-01;KEGG=Os09t0416700-01
Chr09	irgsp1_rep	five_prime_UTR	14926106	14926292	.	-	.	Parent=Os09t0416700-01
Chr09	irgsp1_rep	CDS	14926070	14926105	.	-	0	Parent=Os09t0416700-01
Chr09	irgsp1_rep	CDS	14924910	14925137	.	-	0	Parent=Os09t0416700-01
Chr09	irgsp1_rep	CDS	14924500	14924661	.	-	0	Parent=Os09t0416700-01
Chr09	irgsp1_rep	CDS	14922137	14922250	.	-	0	Parent=Os09t0416700-01
Chr09	irgsp1_rep	CDS	14921935	14922048	.	-	0	Parent=Os09t0416700-01
Chr09	irgsp1_rep	three_prime_UTR	14921694	14921934	.	-	.	Parent=Os09t0416700-01
Chr09	irgsp1_rep	mRNA	14929157	14930268	.	+	.	ID=Os09t0416800-01;Name=Os09t0416800-01;Locus_id=Os09g0416800;RAP-DB Gene Symbol Synonym(s)=OsCAF1G%2C OsCAF1-13;RAP-DB Gene Name Synonym(s)=CCR4-associated factor 1G%2C carbon cataboliterepressor 4-associated factor 1G%2C CCR4-associated factor 1-13;Oryzabase Gene Symbol Synonym(s)=OsCAF1G%2C CAF1G%2C OsCAF1-13;Oryzabase Gene Name Synonym(s)=CCR4-associated factor 1G%2C carbon catabolite repressor 4-associated factor 1G%2C CCR4-associated factor 1-13;Note=Component of the CCR4-NOTcomplex%2C Deadenylase%2C Deadenylation (poly(A) tail shortening)%2C Development and stress response;Transcript_evidence=AK099984,AK065377;ORF_evidence=Q6EQ06;GO=Molecular Function: nucleic acid binding (GO:0003676),Cellular Component: nucleus (GO:0005634);InterPro=Ribonuclease CAF1 (IPR006941),Ribonuclease H-like domain (IPR012337);NIAS_FLcDNA=J013129L05, J013021M02;Manual Curation=July 27%2C 2015;Literature_PMID=24805883;Oryzabase=18146;Expression=AK099984;TENOR=Os09t0416800-01;KEGG=Os09t0416800-01
Chr09	irgsp1_rep	five_prime_UTR	14929157	14929389	.	+	.	Parent=Os09t0416800-01
Chr09	irgsp1_rep	CDS	14929390	14930232	.	+	0	Parent=Os09t0416800-01
Chr09	irgsp1_rep	three_prime_UTR	14930233	14930268	.	+	.	Parent=Os09t0416800-01
Chr09	irgsp1_rep	mRNA	14938305	14941327	.	+	.	ID=Os09t0416900-00;Name=Os09t0416900-00;Locus_id=Os09g0416900;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=EU957071 (DDBJ);ORF_evidence=XP_002867271.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);TENOR=Os09t0416900-00;KEGG=Os09t0416900-00
Chr09	irgsp1_rep	five_prime_UTR	14938305	14938311	.	+	.	Parent=Os09t0416900-00
Chr09	irgsp1_rep	CDS	14938312	14938877	.	+	0	Parent=Os09t0416900-00
Chr09	irgsp1_rep	CDS	14938986	14939886	.	+	1	Parent=Os09t0416900-00
Chr09	irgsp1_rep	three_prime_UTR	14939887	14939912	.	+	.	Parent=Os09t0416900-00
Chr09	irgsp1_rep	three_prime_UTR	14940774	14941327	.	+	.	Parent=Os09t0416900-00
Chr09	irgsp1_rep	mRNA	14959323	14962878	.	-	.	ID=Os09t0417400-00;Name=Os09t0417400-00;Locus_id=Os09g0417400;Oryzabase Gene Symbol Synonym(s)=OsbHLH100;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 100;Note=Hypothetical conserved gene.;Transcript_evidence=CT835880 (DDBJ%2C Best hit);ORF_evidence=NP_001175840.1 (RefSeq);Oryzabase=15385;TENOR=Os09t0417400-00;KEGG=Os09t0417400-00
Chr09	irgsp1_rep	five_prime_UTR	14962800	14962878	.	-	.	Parent=Os09t0417400-00
Chr09	irgsp1_rep	CDS	14962532	14962799	.	-	0	Parent=Os09t0417400-00
Chr09	irgsp1_rep	CDS	14962261	14962303	.	-	2	Parent=Os09t0417400-00
Chr09	irgsp1_rep	CDS	14959695	14959944	.	-	1	Parent=Os09t0417400-00
Chr09	irgsp1_rep	three_prime_UTR	14959323	14959694	.	-	.	Parent=Os09t0417400-00
Chr09	irgsp1_rep	mRNA	14971348	14975334	.	+	.	ID=Os09t0417500-01;Name=Os09t0417500-01;Locus_id=Os09g0417500;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK063513 (DDBJ%2C Best hit);ORF_evidence=A2Z1A2 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-116-G04;Expression=AK063513;TENOR=Os09t0417500-01;KEGG=Os09t0417500-01
Chr09	irgsp1_rep	five_prime_UTR	14971348	14971385	.	+	.	Parent=Os09t0417500-01
Chr09	irgsp1_rep	CDS	14971386	14973242	.	+	0	Parent=Os09t0417500-01
Chr09	irgsp1_rep	three_prime_UTR	14973243	14973349	.	+	.	Parent=Os09t0417500-01
Chr09	irgsp1_rep	three_prime_UTR	14973454	14973556	.	+	.	Parent=Os09t0417500-01
Chr09	irgsp1_rep	three_prime_UTR	14974769	14975028	.	+	.	Parent=Os09t0417500-01
Chr09	irgsp1_rep	three_prime_UTR	14975124	14975334	.	+	.	Parent=Os09t0417500-01
Chr09	irgsp1_rep	mRNA	14976326	14977729	.	-	.	ID=Os09t0417600-01;Name=Os09t0417600-01;Locus_id=Os09g0417600;RAP-DB Gene Symbol Synonym(s)=WRKY76%2C OsWRKY76%2C OsWRKY76.1;RAP-DB Gene Name Synonym(s)=WRKY GENE 76%2C Rice WRKY gene76;CGSNL Gene Symbol=WRKY76;CGSNL Gene Name=WRKY GENE 76;Oryzabase Gene Symbol Synonym(s)=OsWRKY76%2C OsWRKY76.1%2C OsWRKY76.2%2C OsWRKY76.3;Oryzabase Gene Name Synonym(s)=Rice WRKY gene76;Note=WRKY transcription factor%2C Transcriptional repressor%2C Pathogen defense;Transcript_evidence=AK059966,DQ298185 (RIL260);ORF_evidence=Q6EPZ2,Q20DP5;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=WRKY domain (IPR003657);NIAS_FLcDNA=006-211-F11;Manual Curation=June 15%2C 2016;Literature_PMID=27208272,16528562,Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6591;Expression=AK059966;TENOR=Os09t0417600-01;KEGG=Os09t0417600-01
Chr09	irgsp1_rep	five_prime_UTR	14977552	14977729	.	-	.	Parent=Os09t0417600-01
Chr09	irgsp1_rep	CDS	14977387	14977551	.	-	0	Parent=Os09t0417600-01
Chr09	irgsp1_rep	CDS	14976449	14977267	.	-	0	Parent=Os09t0417600-01
Chr09	irgsp1_rep	three_prime_UTR	14976326	14976448	.	-	.	Parent=Os09t0417600-01
Chr09	irgsp1_rep	mRNA	14976197	14977656	.	-	.	ID=Os09t0417600-02;Name=Os09t0417600-02;Locus_id=Os09g0417600;CGSNL Gene Symbol=WRKY76;CGSNL Gene Name=WRKY GENE 76;Oryzabase Gene Symbol Synonym(s)=OsWRKY76%2C OsWRKY76.1%2C OsWRKY76.2%2C OsWRKY76.3;Oryzabase Gene Name Synonym(s)=Rice WRKY gene76;Note=WRKY transcription factor 76.;Transcript_evidence=AK068337 (DDBJ%2C Best hit);ORF_evidence=Q20DP5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);NIAS_FLcDNA=J013151N12;Oryzabase=6591;Expression=AK068337;TENOR=Os09t0417600-02;KEGG=Os09t0417600-02
Chr09	irgsp1_rep	five_prime_UTR	14977552	14977656	.	-	.	Parent=Os09t0417600-02
Chr09	irgsp1_rep	CDS	14977387	14977551	.	-	0	Parent=Os09t0417600-02
Chr09	irgsp1_rep	CDS	14976449	14977267	.	-	0	Parent=Os09t0417600-02
Chr09	irgsp1_rep	three_prime_UTR	14976197	14976448	.	-	.	Parent=Os09t0417600-02
Chr09	irgsp1_rep	mRNA	14976449	14977551	.	-	.	ID=Os09t0417600-03;Name=Os09t0417600-03;Locus_id=Os09g0417600;RAP-DB Gene Symbol Synonym(s)=WRKY76%2C OsWRKY76.2;RAP-DB Gene Name Synonym(s)=WRKY GENE 76;CGSNL Gene Symbol=WRKY76;CGSNL Gene Name=WRKY GENE 76;Oryzabase Gene Symbol Synonym(s)=OsWRKY76%2C OsWRKY76.1%2C OsWRKY76.2%2C OsWRKY76.3;Oryzabase Gene Name Synonym(s)=Rice WRKY gene76;Note=Splicing variant of OsWRKY76%2C Pathogen defense;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=WRKY domain (IPR003657);Manual Curation=June 16%2C 2016;Literature_PMID=27208272,Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6591
Chr09	irgsp1_rep	CDS	14977480	14977551	.	-	0	Parent=Os09t0417600-03
Chr09	irgsp1_rep	CDS	14976449	14977144	.	-	0	Parent=Os09t0417600-03
Chr09	irgsp1_rep	mRNA	14976449	14977237	.	-	.	ID=Os09t0417600-04;Name=Os09t0417600-04;Locus_id=Os09g0417600;RAP-DB Gene Symbol Synonym(s)=WRKY76%2C OsWRKY76.3;RAP-DB Gene Name Synonym(s)=WRKY GENE 76;CGSNL Gene Symbol=WRKY76;CGSNL Gene Name=WRKY GENE 76;Oryzabase Gene Symbol Synonym(s)=OsWRKY76%2C OsWRKY76.1%2C OsWRKY76.2%2C OsWRKY76.3;Oryzabase Gene Name Synonym(s)=Rice WRKY gene76;Note=Splicing variant of OsWRKY76%2C Pathogen defense;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=WRKY domain (IPR003657);Manual Curation=June 16%2C 2016;Literature_PMID=27208272,Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6591
Chr09	irgsp1_rep	CDS	14976449	14977237	.	-	0	Parent=Os09t0417600-04
Chr09	irgsp1_rep	mRNA	14992943	14994888	.	-	.	ID=Os09t0417800-01;Name=Os09t0417800-01;Locus_id=Os09g0417800;RAP-DB Gene Symbol Synonym(s)=WRKY62%2C OsWRKY62%2C OsWRKY62.1%2C XB10;RAP-DB Gene Name Synonym(s)=WRKY GENE 62%2C Rice WRKY gene62%2C XA21 binding protein 10%2C WRKY transcription factor 62;CGSNL Gene Symbol=WRKY62;CGSNL Gene Name=WRKY GENE 62;Oryzabase Gene Symbol Synonym(s)=OsWRKY62%2C OsWRKY62.1%2C OsWRKY62.2%2C XB10;Oryzabase Gene Name Synonym(s)=Rice WRKY gene62%2C XA21 binding protein 10%2C WRKY transcription factor 62;Note=WRKY transcription factor%2C Transcriptional repressor%2C Pathogen defense;Transcript_evidence=AK067834;ORF_evidence=Q6EPZ0;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=WRKY domain (IPR003657);NIAS_FLcDNA=J013121C08;Manual Curation=June 15%2C 2016;Literature_PMID=27208272,Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6577;Expression=AK067834;TENOR=Os09t0417800-01;KEGG=Os09t0417800-01
Chr09	irgsp1_rep	five_prime_UTR	14994761	14994888	.	-	.	Parent=Os09t0417800-01
Chr09	irgsp1_rep	CDS	14994677	14994760	.	-	0	Parent=Os09t0417800-01
Chr09	irgsp1_rep	CDS	14994211	14994543	.	-	0	Parent=Os09t0417800-01
Chr09	irgsp1_rep	CDS	14993994	14994116	.	-	0	Parent=Os09t0417800-01
Chr09	irgsp1_rep	CDS	14993048	14993464	.	-	0	Parent=Os09t0417800-01
Chr09	irgsp1_rep	three_prime_UTR	14992943	14993047	.	-	.	Parent=Os09t0417800-01
Chr09	irgsp1_rep	mRNA	14992918	14994845	.	-	.	ID=Os09t0417800-02;Name=Os09t0417800-02;Locus_id=Os09g0417800;RAP-DB Gene Symbol Synonym(s)=WRKY62%2C OsWRKY62.2;RAP-DB Gene Name Synonym(s)=WRKY GENE 62;CGSNL Gene Symbol=WRKY62;CGSNL Gene Name=WRKY GENE 62;Oryzabase Gene Symbol Synonym(s)=OsWRKY62%2C OsWRKY62.1%2C OsWRKY62.2%2C XB10;Oryzabase Gene Name Synonym(s)=Rice WRKY gene62%2C XA21 binding protein 10%2C WRKY transcription factor 62;Note=Splicing variant of OsWRKY62%2C Pathogen defense;Transcript_evidence=DQ298182;ORF_evidence=Q20DP8;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=WRKY domain (IPR003657);Manual Curation=June 15%2C 2016;Literature_PMID=27208272,16528562,Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6577
Chr09	irgsp1_rep	five_prime_UTR	14994511	14994845	.	-	.	Parent=Os09t0417800-02
Chr09	irgsp1_rep	CDS	14994211	14994510	.	-	0	Parent=Os09t0417800-02
Chr09	irgsp1_rep	CDS	14993994	14994116	.	-	0	Parent=Os09t0417800-02
Chr09	irgsp1_rep	CDS	14993048	14993464	.	-	0	Parent=Os09t0417800-02
Chr09	irgsp1_rep	three_prime_UTR	14992918	14993047	.	-	.	Parent=Os09t0417800-02
Chr09	irgsp1_rep	mRNA	15009182	15010837	.	-	.	ID=Os09t0418000-01;Name=Os09t0418000-01;Locus_id=Os09g0418000;CGSNL Gene Symbol=CIPK16;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 16;Oryzabase Gene Symbol Synonym(s)=OsCIPK16;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 16;Note=Similar to CBL-interacting protein kinase 16.;Transcript_evidence=AK061220 (DDBJ%2C Best hit);ORF_evidence=Q6ERS4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),NAF domain (IPR004041),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),NAF/FISL domain (IPR018451),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=006-210-E11;Oryzabase=7403;TENOR=Os09t0418000-01
Chr09	irgsp1_rep	five_prime_UTR	15010676	15010837	.	-	.	Parent=Os09t0418000-01
Chr09	irgsp1_rep	CDS	15009305	15010675	.	-	0	Parent=Os09t0418000-01
Chr09	irgsp1_rep	three_prime_UTR	15009182	15009304	.	-	.	Parent=Os09t0418000-01
Chr09	irgsp1_rep	mRNA	15009182	15010656	.	-	.	ID=Os09t0418000-02;Name=Os09t0418000-02;Locus_id=Os09g0418000;CGSNL Gene Symbol=CIPK16;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 16;Oryzabase Gene Symbol Synonym(s)=OsCIPK16;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 16;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK119760 (DDBJ%2C Best hit);ORF_evidence=B7E604 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),NAF domain (IPR004041),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),NAF/FISL domain (IPR018451),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=002-171-G02;Oryzabase=7403;Expression=AK119760;TENOR=Os09t0418000-02;KEGG=Os09t0418000-02 (EC:2.7.11.1)
Chr09	irgsp1_rep	five_prime_UTR	15010655	15010656	.	-	.	Parent=Os09t0418000-02
Chr09	irgsp1_rep	CDS	15009530	15010654	.	-	0	Parent=Os09t0418000-02
Chr09	irgsp1_rep	CDS	15009206	15009295	.	-	0	Parent=Os09t0418000-02
Chr09	irgsp1_rep	three_prime_UTR	15009182	15009205	.	-	.	Parent=Os09t0418000-02
Chr09	irgsp1_rep	mRNA	15009182	15010716	.	-	.	ID=Os09t0418000-03;Name=Os09t0418000-03;Locus_id=Os09g0418000;CGSNL Gene Symbol=CIPK16;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 16;Oryzabase Gene Symbol Synonym(s)=OsCIPK16;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 16;Note=Similar to CBL-interacting protein kinase 16.;Transcript_evidence=AK061493 (DDBJ%2C Best hit),AK100881 (DDBJ%2C Best hit);ORF_evidence=Q6ERS4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),NAF domain (IPR004041),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),NAF/FISL domain (IPR018451),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=006-309-B11,J023127H10;Oryzabase=7403;TENOR=Os09t0418000-03
Chr09	irgsp1_rep	five_prime_UTR	15010676	15010716	.	-	.	Parent=Os09t0418000-03
Chr09	irgsp1_rep	CDS	15009305	15010675	.	-	0	Parent=Os09t0418000-03
Chr09	irgsp1_rep	three_prime_UTR	15009182	15009304	.	-	.	Parent=Os09t0418000-03
Chr09	irgsp1_rep	mRNA	15017999	15022887	.	+	.	ID=Os09t0418250-01;Name=Os09t0418250-01;Locus_id=Os09g0418250;Note=Hypothetical conserved gene.;Transcript_evidence=AK288743 (DDBJ%2C Best hit);ORF_evidence=Q6ERS2 (UniProt);NIAS_FLcDNA=J090064F09;TENOR=Os09t0418250-01;KEGG=Os09t0418250-01
Chr09	irgsp1_rep	five_prime_UTR	15017999	15019260	.	+	.	Parent=Os09t0418250-01
Chr09	irgsp1_rep	CDS	15019261	15019446	.	+	0	Parent=Os09t0418250-01
Chr09	irgsp1_rep	three_prime_UTR	15019447	15022887	.	+	.	Parent=Os09t0418250-01
Chr09	irgsp1_rep	mRNA	15027228	15028156	.	-	.	ID=Os09t0418375-00;Name=Os09t0418375-00;Locus_id=Os09g0418375;Note=Hypothetical protein.;Transcript_evidence=tplb0061j19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0418375-00
Chr09	irgsp1_rep	CDS	15027228	15028156	.	-	0	Parent=Os09t0418375-00
Chr09	irgsp1_rep	mRNA	15027311	15034300	.	+	.	ID=Os09t0418500-00;Name=Os09t0418500-00;Locus_id=Os09g0418500;CGSNL Gene Symbol=CIPK27;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 27;Oryzabase Gene Symbol Synonym(s)=OsCIPK27;Oryzabase Gene Name Synonym(s)=Putative CBL-interacting protein kinase 27;Note=Similar to CBL-interacting protein kinase 14.;Transcript_evidence=EU970334 (DDBJ);ORF_evidence=C4P7S4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),NAF domain (IPR004041),Domain of unknown function DUF390 (IPR007228),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),NAF/FISL domain (IPR018451),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=7415;TENOR=Os09t0418500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	15027311	15028423	.	+	0	Parent=Os09t0418500-00
Chr09	irgsp1_rep	CDS	15032987	15034300	.	+	0	Parent=Os09t0418500-00
Chr09	irgsp1_rep	mRNA	15046354	15047280	.	+	.	ID=Os09t0418700-00;Name=Os09t0418700-00;Locus_id=Os09g0418700;Note=Similar to R111.;Transcript_evidence=FP095117 (DDBJ);ORF_evidence=D2CFI1 (UniProt);TENOR=Os09t0418700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	15046354	15046908	.	+	0	Parent=Os09t0418700-00
Chr09	irgsp1_rep	three_prime_UTR	15046909	15047280	.	+	.	Parent=Os09t0418700-00
Chr09	irgsp1_rep	mRNA	15042867	15047143	.	-	.	ID=Os09t0418800-00;Name=Os09t0418800-00;Locus_id=Os09g0418800;Note=Hypothetical gene.;Transcript_evidence=BT085651 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0418800-00;KEGG=Os09t0418800-00
Chr09	irgsp1_rep	five_prime_UTR	15047143	15047143	.	-	.	Parent=Os09t0418800-00
Chr09	irgsp1_rep	CDS	15046712	15047142	.	-	0	Parent=Os09t0418800-00
Chr09	irgsp1_rep	CDS	15043010	15043034	.	-	1	Parent=Os09t0418800-00
Chr09	irgsp1_rep	three_prime_UTR	15042867	15043009	.	-	.	Parent=Os09t0418800-00
Chr09	irgsp1_rep	mRNA	15065801	15071348	.	+	.	ID=Os09t0419100-01;Name=Os09t0419100-01;Locus_id=Os09g0419100;Note=Hypothetical protein.;Transcript_evidence=AK121336 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023119L24;Expression=AK121336;TENOR=Os09t0419100-01;KEGG=Os09t0419100-01
Chr09	irgsp1_rep	five_prime_UTR	15065801	15067767	.	+	.	Parent=Os09t0419100-01
Chr09	irgsp1_rep	CDS	15067768	15068121	.	+	0	Parent=Os09t0419100-01
Chr09	irgsp1_rep	three_prime_UTR	15068122	15070596	.	+	.	Parent=Os09t0419100-01
Chr09	irgsp1_rep	three_prime_UTR	15070713	15070801	.	+	.	Parent=Os09t0419100-01
Chr09	irgsp1_rep	three_prime_UTR	15070909	15071348	.	+	.	Parent=Os09t0419100-01
Chr09	irgsp1_rep	mRNA	15065810	15072060	.	+	.	ID=Os09t0419100-02;Name=Os09t0419100-02;Locus_id=Os09g0419100;Note=Non-protein coding transcript.;Transcript_evidence=AK073292 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J033024I19;TENOR=Os09t0419100-02
Chr09	irgsp1_rep	exon	15065810	15066109	.	+	.	Parent=Os09t0419100-02
Chr09	irgsp1_rep	exon	15070523	15070596	.	+	.	Parent=Os09t0419100-02
Chr09	irgsp1_rep	exon	15070713	15070801	.	+	.	Parent=Os09t0419100-02
Chr09	irgsp1_rep	exon	15070909	15072060	.	+	.	Parent=Os09t0419100-02
Chr09	irgsp1_rep	mRNA	15067783	15072059	.	+	.	ID=Os09t0419100-03;Name=Os09t0419100-03;Locus_id=Os09g0419100;Note=Hypothetical gene.;Transcript_evidence=AK068557 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013154M23;Expression=AK068557;TENOR=Os09t0419100-03;KEGG=Os09t0419100-03
Chr09	irgsp1_rep	five_prime_UTR	15067783	15067836	.	+	.	Parent=Os09t0419100-03
Chr09	irgsp1_rep	CDS	15067837	15068121	.	+	0	Parent=Os09t0419100-03
Chr09	irgsp1_rep	three_prime_UTR	15068122	15070596	.	+	.	Parent=Os09t0419100-03
Chr09	irgsp1_rep	three_prime_UTR	15070713	15070801	.	+	.	Parent=Os09t0419100-03
Chr09	irgsp1_rep	three_prime_UTR	15070909	15072059	.	+	.	Parent=Os09t0419100-03
Chr09	irgsp1_rep	mRNA	15071339	15072062	.	+	.	ID=Os09t0419100-04;Name=Os09t0419100-04;Locus_id=Os09g0419100;Note=Non-protein coding transcript.;Transcript_evidence=AK058417 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-015-D04;TENOR=Os09t0419100-04
Chr09	irgsp1_rep	exon	15071339	15072062	.	+	.	Parent=Os09t0419100-04
Chr09	irgsp1_rep	mRNA	15076258	15079326	.	-	.	ID=Os09t0419200-01;Name=Os09t0419200-01;Locus_id=Os09g0419200;CGSNL Gene Symbol=CCR19;CGSNL Gene Name=CINNAMOYL-COA REDUCTASE 19;Oryzabase Gene Symbol Synonym(s)=OsCCR19;Oryzabase Gene Name Synonym(s)=cinnamoyl CoA reductase 19;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK067949 (DDBJ%2C Best hit),AK104860 (DDBJ%2C Best hit);ORF_evidence=Q75W58 (UniProt);NIAS_FLcDNA=J013128P15,001-043-D11;Oryzabase=16721;TENOR=Os09t0419200-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	15079294	15079326	.	-	.	Parent=Os09t0419200-01
Chr09	irgsp1_rep	CDS	15079107	15079293	.	-	0	Parent=Os09t0419200-01
Chr09	irgsp1_rep	CDS	15078822	15078976	.	-	2	Parent=Os09t0419200-01
Chr09	irgsp1_rep	CDS	15078529	15078717	.	-	0	Parent=Os09t0419200-01
Chr09	irgsp1_rep	CDS	15077763	15078115	.	-	0	Parent=Os09t0419200-01
Chr09	irgsp1_rep	CDS	15076415	15076604	.	-	1	Parent=Os09t0419200-01
Chr09	irgsp1_rep	three_prime_UTR	15076258	15076414	.	-	.	Parent=Os09t0419200-01
Chr09	irgsp1_rep	mRNA	15077422	15079319	.	-	.	ID=Os09t0419200-02;Name=Os09t0419200-02;Locus_id=Os09g0419200;CGSNL Gene Symbol=CCR19;CGSNL Gene Name=CINNAMOYL-COA REDUCTASE 19;Oryzabase Gene Symbol Synonym(s)=OsCCR19;Oryzabase Gene Name Synonym(s)=cinnamoyl CoA reductase 19;Note=Similar to Cinnamoyl-CoA reductase.;Transcript_evidence=AK107198 (DDBJ%2C Best hit);ORF_evidence=Q8H1H7 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=002-125-A12;Oryzabase=16721;Expression=AK107198;TENOR=Os09t0419200-02;KEGG=Os09t0419200-02
Chr09	irgsp1_rep	five_prime_UTR	15079294	15079319	.	-	.	Parent=Os09t0419200-02
Chr09	irgsp1_rep	CDS	15079107	15079293	.	-	0	Parent=Os09t0419200-02
Chr09	irgsp1_rep	CDS	15078822	15078976	.	-	2	Parent=Os09t0419200-02
Chr09	irgsp1_rep	CDS	15078529	15078717	.	-	0	Parent=Os09t0419200-02
Chr09	irgsp1_rep	CDS	15077759	15078115	.	-	0	Parent=Os09t0419200-02
Chr09	irgsp1_rep	three_prime_UTR	15077422	15077758	.	-	.	Parent=Os09t0419200-02
Chr09	irgsp1_rep	mRNA	15090663	15092888	.	+	.	ID=Os09t0419500-01;Name=Os09t0419500-01;Locus_id=Os09g0419500;Oryzabase Gene Symbol Synonym(s)=qSSR9-1;Oryzabase Gene Name Synonym(s)=candidate gene for qSSR9-1;Note=Similar to ubiquitin-protein ligase/ zinc ion binding protein.;Transcript_evidence=AK073786 (DDBJ%2C Best hit);ORF_evidence=NP_001147119.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C C6HC-type (IPR002867),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J033067G01;Oryzabase=22541;Expression=AK073786;TENOR=Os09t0419500-01;KEGG=Os09t0419500-01 (EC:6.3.2.19)
Chr09	irgsp1_rep	five_prime_UTR	15090663	15090899	.	+	.	Parent=Os09t0419500-01
Chr09	irgsp1_rep	CDS	15090900	15090990	.	+	0	Parent=Os09t0419500-01
Chr09	irgsp1_rep	CDS	15091485	15092505	.	+	2	Parent=Os09t0419500-01
Chr09	irgsp1_rep	CDS	15092619	15092703	.	+	1	Parent=Os09t0419500-01
Chr09	irgsp1_rep	three_prime_UTR	15092704	15092888	.	+	.	Parent=Os09t0419500-01
Chr09	irgsp1_rep	mRNA	15090674	15092888	.	+	.	ID=Os09t0419500-02;Name=Os09t0419500-02;Locus_id=Os09g0419500;Oryzabase Gene Symbol Synonym(s)=qSSR9-1;Oryzabase Gene Name Synonym(s)=candidate gene for qSSR9-1;Note=Zinc finger%2C C6HC-type domain containing protein.;Transcript_evidence=AK064394 (DDBJ%2C Best hit);ORF_evidence=Q6ERQ9 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C C6HC-type (IPR002867),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=002-108-G02;Oryzabase=22541;Expression=AK064394;TENOR=Os09t0419500-02;KEGG=Os09t0419500-02
Chr09	irgsp1_rep	five_prime_UTR	15090674	15090899	.	+	.	Parent=Os09t0419500-02
Chr09	irgsp1_rep	CDS	15090900	15090990	.	+	0	Parent=Os09t0419500-02
Chr09	irgsp1_rep	CDS	15091485	15091701	.	+	2	Parent=Os09t0419500-02
Chr09	irgsp1_rep	CDS	15091945	15092505	.	+	1	Parent=Os09t0419500-02
Chr09	irgsp1_rep	CDS	15092619	15092703	.	+	1	Parent=Os09t0419500-02
Chr09	irgsp1_rep	three_prime_UTR	15092704	15092888	.	+	.	Parent=Os09t0419500-02
Chr09	irgsp1_rep	mRNA	15094501	15095507	.	+	.	ID=Os09t0419600-01;Name=Os09t0419600-01;Locus_id=Os09g0419600;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=AK109320 (DDBJ%2C Best hit);ORF_evidence=A2Z1B1 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C C6HC-type (IPR002867),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907);NIAS_FLcDNA=002-188-G12;TENOR=Os09t0419600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	15094501	15095189	.	+	0	Parent=Os09t0419600-01
Chr09	irgsp1_rep	CDS	15095352	15095430	.	+	1	Parent=Os09t0419600-01
Chr09	irgsp1_rep	three_prime_UTR	15095431	15095507	.	+	.	Parent=Os09t0419600-01
Chr09	irgsp1_rep	mRNA	15111079	15112079	.	+	.	ID=Os09t0420000-00;Name=Os09t0420000-00;Locus_id=Os09g0420000;Note=Hypothetical conserved gene.;Transcript_evidence=BT062797 (DDBJ);ORF_evidence=NP_001063193.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C C6HC-type (IPR002867),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907);TENOR=Os09t0420000-00;KEGG=Os09t0420000-00
Chr09	irgsp1_rep	five_prime_UTR	15111079	15111085	.	+	.	Parent=Os09t0420000-00
Chr09	irgsp1_rep	CDS	15111086	15111383	.	+	0	Parent=Os09t0420000-00
Chr09	irgsp1_rep	CDS	15111438	15112072	.	+	2	Parent=Os09t0420000-00
Chr09	irgsp1_rep	three_prime_UTR	15112073	15112079	.	+	.	Parent=Os09t0420000-00
Chr09	irgsp1_rep	mRNA	15126331	15128929	.	+	.	ID=Os09t0420100-01;Name=Os09t0420100-01;Locus_id=Os09g0420100;Note=Zinc finger%2C C6HC-type domain containing protein.;Transcript_evidence=AK068795 (DDBJ%2C Best hit);ORF_evidence=NP_001147119.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C C6HC-type (IPR002867),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J013169J03;Expression=AK068795;TENOR=Os09t0420100-01;KEGG=Os09t0420100-01
Chr09	irgsp1_rep	five_prime_UTR	15126331	15126373	.	+	.	Parent=Os09t0420100-01
Chr09	irgsp1_rep	CDS	15126374	15126644	.	+	0	Parent=Os09t0420100-01
Chr09	irgsp1_rep	CDS	15126729	15127336	.	+	2	Parent=Os09t0420100-01
Chr09	irgsp1_rep	three_prime_UTR	15127337	15128929	.	+	.	Parent=Os09t0420100-01
Chr09	irgsp1_rep	mRNA	15129641	15133118	.	+	.	ID=Os09t0420200-01;Name=Os09t0420200-01;Locus_id=Os09g0420200;Note=Conserved hypothetical protein.;Transcript_evidence=AK068903 (DDBJ%2C Best hit);ORF_evidence=B9G3M2 (UniProt);NIAS_FLcDNA=J013170N17;TENOR=Os09t0420200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	15129641	15129792	.	+	.	Parent=Os09t0420200-01
Chr09	irgsp1_rep	CDS	15129793	15130002	.	+	0	Parent=Os09t0420200-01
Chr09	irgsp1_rep	CDS	15131795	15131839	.	+	0	Parent=Os09t0420200-01
Chr09	irgsp1_rep	three_prime_UTR	15131840	15133118	.	+	.	Parent=Os09t0420200-01
Chr09	irgsp1_rep	mRNA	15135243	15139321	.	-	.	ID=Os09t0420300-01;Name=Os09t0420300-01;Locus_id=Os09g0420300;Note=Methyladenine glycosylase domain containing protein.;Transcript_evidence=AK120582 (DDBJ%2C Best hit);ORF_evidence=A2Z1B4 (UniProt);GO=Biological Process: DNA repair (GO:0006281),Biological Process: base-excision repair (GO:0006284),Molecular Function: catalytic activity (GO:0003824),Molecular Function: DNA-3-methyladenine glycosylase I activity (GO:0008725);InterPro=Methyladenine glycosylase (IPR005019),DNA glycosylase (IPR011257);NIAS_FLcDNA=J013136E12;Expression=AK120582;TENOR=Os09t0420300-01;KEGG=Os09t0420300-01 (EC:3.2.2.20)
Chr09	irgsp1_rep	five_prime_UTR	15139224	15139321	.	-	.	Parent=Os09t0420300-01
Chr09	irgsp1_rep	CDS	15138689	15139223	.	-	0	Parent=Os09t0420300-01
Chr09	irgsp1_rep	CDS	15136633	15136690	.	-	2	Parent=Os09t0420300-01
Chr09	irgsp1_rep	CDS	15136455	15136538	.	-	1	Parent=Os09t0420300-01
Chr09	irgsp1_rep	CDS	15136207	15136348	.	-	1	Parent=Os09t0420300-01
Chr09	irgsp1_rep	CDS	15135557	15135973	.	-	0	Parent=Os09t0420300-01
Chr09	irgsp1_rep	three_prime_UTR	15135243	15135556	.	-	.	Parent=Os09t0420300-01
Chr09	irgsp1_rep	mRNA	15153787	15157002	.	-	.	ID=Os09t0420600-01;Name=Os09t0420600-01;Locus_id=Os09g0420600;Note=PDZ/DHR/GLGF domain containing protein.;Transcript_evidence=AK072629 (DDBJ%2C Best hit);ORF_evidence=B6TN44 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=PDZ/DHR/GLGF (IPR001478);NIAS_FLcDNA=J023125P05;Expression=AK072629;TENOR=Os09t0420600-01;KEGG=Os09t0420600-01
Chr09	irgsp1_rep	five_prime_UTR	15156918	15157002	.	-	.	Parent=Os09t0420600-01
Chr09	irgsp1_rep	CDS	15156777	15156917	.	-	0	Parent=Os09t0420600-01
Chr09	irgsp1_rep	CDS	15156625	15156685	.	-	0	Parent=Os09t0420600-01
Chr09	irgsp1_rep	CDS	15155683	15155790	.	-	2	Parent=Os09t0420600-01
Chr09	irgsp1_rep	CDS	15154683	15154992	.	-	2	Parent=Os09t0420600-01
Chr09	irgsp1_rep	CDS	15154159	15154180	.	-	1	Parent=Os09t0420600-01
Chr09	irgsp1_rep	three_prime_UTR	15153787	15154158	.	-	.	Parent=Os09t0420600-01
Chr09	irgsp1_rep	mRNA	15156995	15158956	.	+	.	ID=Os09t0420700-01;Name=Os09t0420700-01;Locus_id=Os09g0420700;Note=Similar to Cox17p.;Transcript_evidence=AK111264 (DDBJ%2C Best hit);ORF_evidence=B6T1A4 (UniProt);GO=Biological Process: copper ion transport (GO:0006825),Cellular Component: mitochondrial intermembrane space (GO:0005758),Molecular Function: copper ion binding (GO:0005507),Molecular Function: copper chaperone activity (GO:0016531);InterPro=CytoChrome c oxidase copper chaperone (IPR007745),MTCP1 (IPR009069);NIAS_FLcDNA=002-180-F05;Expression=AK111264;TENOR=Os09t0420700-01;KEGG=Os09t0420700-01
Chr09	irgsp1_rep	five_prime_UTR	15156995	15157220	.	+	.	Parent=Os09t0420700-01
Chr09	irgsp1_rep	five_prime_UTR	15158478	15158479	.	+	.	Parent=Os09t0420700-01
Chr09	irgsp1_rep	CDS	15158480	15158701	.	+	0	Parent=Os09t0420700-01
Chr09	irgsp1_rep	three_prime_UTR	15158702	15158956	.	+	.	Parent=Os09t0420700-01
Chr09	irgsp1_rep	mRNA	15160893	15162859	.	+	.	ID=Os09t0420800-01;Name=Os09t0420800-01;Locus_id=Os09g0420800;Note=Similar to Ubiquitin.;Transcript_evidence=AK099513 (DDBJ%2C Best hit);ORF_evidence=B4FPT7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin (IPR000626),Ubiquitin conserved site (IPR019954),Ubiquitin supergroup (IPR019955),Ubiquitin subgroup (IPR019956);NIAS_FLcDNA=J013029K20;Expression=AK099513;TENOR=Os09t0420800-01;KEGG=Os09t0420800-01
Chr09	irgsp1_rep	five_prime_UTR	15160893	15161042	.	+	.	Parent=Os09t0420800-01
Chr09	irgsp1_rep	CDS	15161043	15161135	.	+	0	Parent=Os09t0420800-01
Chr09	irgsp1_rep	CDS	15162168	15162427	.	+	0	Parent=Os09t0420800-01
Chr09	irgsp1_rep	CDS	15162571	15162679	.	+	1	Parent=Os09t0420800-01
Chr09	irgsp1_rep	three_prime_UTR	15162680	15162859	.	+	.	Parent=Os09t0420800-01
Chr09	irgsp1_rep	mRNA	15163139	15168798	.	-	.	ID=Os09t0420900-01;Name=Os09t0420900-01;Locus_id=Os09g0420900;Oryzabase Gene Name Synonym(s)=BTB domain containing protein;Note=BTB domain containing protein.;Transcript_evidence=AK065475 (DDBJ%2C Best hit);ORF_evidence=NP_001147935.1 (RefSeq);GO=Biological Process: response to light stimulus (GO:0009416),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),NPH3 (IPR004249),BTB/POZ fold (IPR011333);NIAS_FLcDNA=J013024N13;Oryzabase=22764;Expression=AK065475;TENOR=Os09t0420900-01;KEGG=Os09t0420900-01
Chr09	irgsp1_rep	five_prime_UTR	15168460	15168798	.	-	.	Parent=Os09t0420900-01
Chr09	irgsp1_rep	CDS	15168398	15168459	.	-	0	Parent=Os09t0420900-01
Chr09	irgsp1_rep	CDS	15166222	15166291	.	-	1	Parent=Os09t0420900-01
Chr09	irgsp1_rep	CDS	15164241	15165407	.	-	0	Parent=Os09t0420900-01
Chr09	irgsp1_rep	CDS	15163447	15164004	.	-	0	Parent=Os09t0420900-01
Chr09	irgsp1_rep	three_prime_UTR	15163139	15163446	.	-	.	Parent=Os09t0420900-01
Chr09	irgsp1_rep	mRNA	15204133	15207865	.	-	.	ID=Os09t0421100-00;Name=Os09t0421100-00;Locus_id=Os09g0421100;Note=Similar to deoxyhypusine synthase 1.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001149084.1 (RefSeq);GO=Biological Process: peptidyl-lysine modification to hypusine (GO:0008612);InterPro=Deoxyhypusine synthase (IPR002773);TENOR=Os09t0421100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	15207620	15207865	.	-	0	Parent=Os09t0421100-00
Chr09	irgsp1_rep	CDS	15206869	15207036	.	-	0	Parent=Os09t0421100-00
Chr09	irgsp1_rep	CDS	15206495	15206714	.	-	0	Parent=Os09t0421100-00
Chr09	irgsp1_rep	CDS	15204945	15205180	.	-	2	Parent=Os09t0421100-00
Chr09	irgsp1_rep	CDS	15204133	15204168	.	-	0	Parent=Os09t0421100-00
Chr09	irgsp1_rep	mRNA	15204386	15205364	.	+	.	ID=Os09t0421133-00;Name=Os09t0421133-00;Locus_id=Os09g0421133;Note=Non-protein coding transcript.;Transcript_evidence=BT016909 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0421133-00
Chr09	irgsp1_rep	exon	15204386	15204468	.	+	.	Parent=Os09t0421133-00
Chr09	irgsp1_rep	exon	15204937	15205180	.	+	.	Parent=Os09t0421133-00
Chr09	irgsp1_rep	exon	15205257	15205364	.	+	.	Parent=Os09t0421133-00
Chr09	irgsp1_rep	mRNA	15208714	15211873	.	-	.	ID=Os09t0421166-00;Name=Os09t0421166-00;Locus_id=Os09g0421166;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G3M6 (UniProt);TENOR=Os09t0421166-00;KEGG=Os09t0421166-00
Chr09	irgsp1_rep	CDS	15211614	15211873	.	-	0	Parent=Os09t0421166-00
Chr09	irgsp1_rep	CDS	15210933	15211005	.	-	1	Parent=Os09t0421166-00
Chr09	irgsp1_rep	CDS	15210400	15210471	.	-	0	Parent=Os09t0421166-00
Chr09	irgsp1_rep	CDS	15208714	15208947	.	-	0	Parent=Os09t0421166-00
Chr09	irgsp1_rep	mRNA	15212406	15215467	.	-	.	ID=Os09t0421200-01;Name=Os09t0421200-01;Locus_id=Os09g0421200;Note=Conserved hypothetical protein.;Transcript_evidence=AK059290 (DDBJ%2C Best hit);ORF_evidence=B9G3M6 (UniProt);NIAS_FLcDNA=001-025-E02;TENOR=Os09t0421200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	15215399	15215467	.	-	0	Parent=Os09t0421200-01
Chr09	irgsp1_rep	CDS	15215235	15215321	.	-	0	Parent=Os09t0421200-01
Chr09	irgsp1_rep	CDS	15214951	15215154	.	-	0	Parent=Os09t0421200-01
Chr09	irgsp1_rep	CDS	15214638	15214805	.	-	0	Parent=Os09t0421200-01
Chr09	irgsp1_rep	CDS	15213692	15213898	.	-	0	Parent=Os09t0421200-01
Chr09	irgsp1_rep	CDS	15213492	15213581	.	-	0	Parent=Os09t0421200-01
Chr09	irgsp1_rep	CDS	15213271	15213408	.	-	0	Parent=Os09t0421200-01
Chr09	irgsp1_rep	CDS	15212516	15212623	.	-	0	Parent=Os09t0421200-01
Chr09	irgsp1_rep	three_prime_UTR	15212406	15212515	.	-	.	Parent=Os09t0421200-01
Chr09	irgsp1_rep	mRNA	15222675	15226444	.	-	.	ID=Os09t0421300-01;Name=Os09t0421300-01;Locus_id=Os09g0421300;CGSNL Gene Symbol=PLDalpha8;CGSNL Gene Name=PHOSPHOLIPASE D alpha 8;Oryzabase Gene Symbol Synonym(s)=OsPLDalpha8%2C OsPLDlambda;Oryzabase Gene Name Synonym(s)=phospholipase D lambda;Note=Phospholipase D lambda.;Transcript_evidence=AK120459 (DDBJ%2C Best hit),AK100975 (DDBJ%2C Best hit);ORF_evidence=Q8SAG6 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: phosphatidylcholine metabolic process (GO:0046470),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phospholipase D activity (GO:0004630),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),Phospholipase D/Transphosphatidylase (IPR001736),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),Phospholipase D%2C plant (IPR011402),Phospholipase D (IPR015679),Phospholipase D%2C C-terminal (IPR024632);NIAS_FLcDNA=J013106C05,J023143J04;Oryzabase=8694;Expression=AK120459;TENOR=Os09t0421300-01;KEGG=Os09t0421300-01
Chr09	irgsp1_rep	five_prime_UTR	15226409	15226444	.	-	.	Parent=Os09t0421300-01
Chr09	irgsp1_rep	CDS	15226304	15226408	.	-	0	Parent=Os09t0421300-01
Chr09	irgsp1_rep	CDS	15223464	15225363	.	-	0	Parent=Os09t0421300-01
Chr09	irgsp1_rep	CDS	15222936	15223384	.	-	2	Parent=Os09t0421300-01
Chr09	irgsp1_rep	three_prime_UTR	15222675	15222935	.	-	.	Parent=Os09t0421300-01
Chr09	irgsp1_rep	mRNA	15233455	15235329	.	+	.	ID=Os09t0421500-01;Name=Os09t0421500-01;Locus_id=Os09g0421500;Note=Conserved hypothetical protein.;Transcript_evidence=AK059873 (DDBJ%2C Best hit);ORF_evidence=A2Z1C2 (UniProt);NIAS_FLcDNA=006-207-F04;Expression=AK059873;TENOR=Os09t0421500-01;KEGG=Os09t0421500-01
Chr09	irgsp1_rep	five_prime_UTR	15233455	15233714	.	+	.	Parent=Os09t0421500-01
Chr09	irgsp1_rep	CDS	15233715	15233861	.	+	0	Parent=Os09t0421500-01
Chr09	irgsp1_rep	CDS	15234249	15234319	.	+	0	Parent=Os09t0421500-01
Chr09	irgsp1_rep	CDS	15234482	15234668	.	+	1	Parent=Os09t0421500-01
Chr09	irgsp1_rep	CDS	15234758	15234949	.	+	0	Parent=Os09t0421500-01
Chr09	irgsp1_rep	three_prime_UTR	15234950	15235329	.	+	.	Parent=Os09t0421500-01
Chr09	irgsp1_rep	mRNA	15233495	15235333	.	+	.	ID=Os09t0421500-02;Name=Os09t0421500-02;Locus_id=Os09g0421500;Note=Hypothetical conserved gene.;Transcript_evidence=AK070023 (DDBJ%2C Best hit);ORF_evidence=Q69P60 (UniProt);NIAS_FLcDNA=J023039K01;Expression=AK070023;TENOR=Os09t0421500-02;KEGG=Os09t0421500-02
Chr09	irgsp1_rep	five_prime_UTR	15233495	15234242	.	+	.	Parent=Os09t0421500-02
Chr09	irgsp1_rep	CDS	15234243	15234319	.	+	0	Parent=Os09t0421500-02
Chr09	irgsp1_rep	CDS	15234482	15234668	.	+	1	Parent=Os09t0421500-02
Chr09	irgsp1_rep	CDS	15234758	15234949	.	+	0	Parent=Os09t0421500-02
Chr09	irgsp1_rep	three_prime_UTR	15234950	15235333	.	+	.	Parent=Os09t0421500-02
Chr09	irgsp1_rep	mRNA	15235478	15237037	.	-	.	ID=Os09t0421600-00;Name=Os09t0421600-00;Locus_id=Os09g0421600;Note=Zinc finger%2C U1-type domain containing protein.;Transcript_evidence=BT063777 (DDBJ);ORF_evidence=Q69P59 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C U1-type (IPR003604),Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);TENOR=Os09t0421600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	15236672	15237037	.	-	.	Parent=Os09t0421600-00
Chr09	irgsp1_rep	five_prime_UTR	15236547	15236556	.	-	.	Parent=Os09t0421600-00
Chr09	irgsp1_rep	CDS	15236118	15236546	.	-	0	Parent=Os09t0421600-00
Chr09	irgsp1_rep	CDS	15235772	15236060	.	-	0	Parent=Os09t0421600-00
Chr09	irgsp1_rep	CDS	15235715	15235719	.	-	2	Parent=Os09t0421600-00
Chr09	irgsp1_rep	three_prime_UTR	15235478	15235714	.	-	.	Parent=Os09t0421600-00
Chr09	irgsp1_rep	mRNA	15240448	15242482	.	-	.	ID=Os09t0421700-01;Name=Os09t0421700-01;Locus_id=Os09g0421700;Note=Zinc finger%2C U1-type domain containing protein.;Transcript_evidence=AK108547 (DDBJ%2C Best hit);ORF_evidence=A3BYY2 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C U1-type (IPR003604),Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=002-144-D12;Expression=AK108547;TENOR=Os09t0421700-01;KEGG=Os09t0421700-01
Chr09	irgsp1_rep	five_prime_UTR	15242420	15242482	.	-	.	Parent=Os09t0421700-01
Chr09	irgsp1_rep	CDS	15242392	15242419	.	-	0	Parent=Os09t0421700-01
Chr09	irgsp1_rep	CDS	15241700	15241887	.	-	2	Parent=Os09t0421700-01
Chr09	irgsp1_rep	CDS	15240636	15241406	.	-	0	Parent=Os09t0421700-01
Chr09	irgsp1_rep	three_prime_UTR	15240448	15240635	.	-	.	Parent=Os09t0421700-01
Chr09	irgsp1_rep	mRNA	15245153	15247495	.	-	.	ID=Os09t0421800-00;Name=Os09t0421800-00;Locus_id=Os09g0421800;Note=Zinc finger%2C C2H2-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001175842.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2-type matrin (IPR000690),Zinc finger%2C U1-type (IPR003604),Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);TENOR=Os09t0421800-00;KEGG=Os09t0421800-00
Chr09	irgsp1_rep	CDS	15247399	15247495	.	-	0	Parent=Os09t0421800-00
Chr09	irgsp1_rep	CDS	15246163	15247148	.	-	2	Parent=Os09t0421800-00
Chr09	irgsp1_rep	CDS	15245153	15245554	.	-	0	Parent=Os09t0421800-00
Chr09	irgsp1_rep	mRNA	15252011	15256325	.	-	.	ID=Os09t0422000-01;Name=Os09t0422000-01;Locus_id=Os09g0422000;Oryzabase Gene Symbol Synonym(s)=HCT3;Oryzabase Gene Name Synonym(s)=hydroxycinnamoyl CoA:shikimate/quinate hydroxycinnamoyl transferase 3;Note=Transferase family protein.;Transcript_evidence=AK101900 (DDBJ%2C Best hit),AK058559 (DDBJ%2C Best hit);ORF_evidence=B6TXA0 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J033071B22,001-017-D08;Oryzabase=16719;Expression=AK101900;TENOR=Os09t0422000-01;KEGG=Os09t0422000-01
Chr09	irgsp1_rep	five_prime_UTR	15256250	15256325	.	-	.	Parent=Os09t0422000-01
Chr09	irgsp1_rep	CDS	15255809	15256249	.	-	0	Parent=Os09t0422000-01
Chr09	irgsp1_rep	CDS	15252318	15253199	.	-	0	Parent=Os09t0422000-01
Chr09	irgsp1_rep	three_prime_UTR	15252011	15252317	.	-	.	Parent=Os09t0422000-01
Chr09	irgsp1_rep	mRNA	15267430	15267990	.	-	.	ID=Os09t0422250-00;Name=Os09t0422250-00;Locus_id=Os09g0422250;Note=Non-protein coding transcript.;Transcript_evidence=CT835862 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os09t0422250-00
Chr09	irgsp1_rep	exon	15267430	15267990	.	-	.	Parent=Os09t0422250-00
Chr09	irgsp1_rep	mRNA	15281320	15285893	.	+	.	ID=Os09t0422500-01;Name=Os09t0422500-01;Locus_id=Os09g0422500;RAP-DB Gene Symbol Synonym(s)=BC6%2C Bc6*%2C Bc6%2C OsCesA9%2C CESA9%2C OsCESA9%2C OS_CESA09%2C OsCesA 9%2C CesA9;RAP-DB Gene Name Synonym(s)=BRITTLE CULM 6%2C Brittle culm6%2C Brittle culm 6%2C Brittle culm-6%2C Cellulose synthase A catalytic subunit 9 [UDP-forming]%2C Cellulose synthase A catalytic subunit 9;CGSNL Gene Symbol=BC6;CGSNL Gene Name=BRITTLE CULM 6;Oryzabase Gene Symbol Synonym(s)=Bc6*%2C Bc6%2C OsCesA9%2C CESA9%2C OsCESA9%2C OS_CESA09%2C OsCesA 9%2C CesA9%2C BC88;Oryzabase Gene Name Synonym(s)=Brittle culm6%2C Brittle culm 6%2C Brittle culm-6%2C Cellulose synthase A catalytic subunit 9 [UDP-forming]%2C Cellulose synthase A catalytic subunit 9;Note=Cellulose synthase A catalytic subunit 9%2C Cell wall biosynthesis and plant growth;Transcript_evidence=AK121170;ORF_evidence=Q69P51;GO=Biological Process: cellulose biosynthetic process (GO:0030244),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760),Cellular Component: membrane (GO:0016020);InterPro=Cellulose synthase (IPR005150),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841),Cellulose synthase%2C RING-type zinc finger (IPR027934),Nucleotide-diphospho-sugar transferases (IPR029044);NIAS_FLcDNA=J023081B08;Manual Curation=February 17%2C 2017;Literature_PMID=23017906,21209026;Oryzabase=31;Expression=AK121170;TENOR=Os09t0422500-01;KEGG=Os09t0422500-01 (EC:2.4.1.12)
Chr09	irgsp1_rep	five_prime_UTR	15281320	15281412	.	+	.	Parent=Os09t0422500-01
Chr09	irgsp1_rep	CDS	15281413	15281683	.	+	0	Parent=Os09t0422500-01
Chr09	irgsp1_rep	CDS	15281789	15282024	.	+	2	Parent=Os09t0422500-01
Chr09	irgsp1_rep	CDS	15282120	15282216	.	+	0	Parent=Os09t0422500-01
Chr09	irgsp1_rep	CDS	15282308	15282434	.	+	2	Parent=Os09t0422500-01
Chr09	irgsp1_rep	CDS	15282521	15283133	.	+	1	Parent=Os09t0422500-01
Chr09	irgsp1_rep	CDS	15283223	15283486	.	+	0	Parent=Os09t0422500-01
Chr09	irgsp1_rep	CDS	15283569	15283781	.	+	0	Parent=Os09t0422500-01
Chr09	irgsp1_rep	CDS	15283904	15284111	.	+	0	Parent=Os09t0422500-01
Chr09	irgsp1_rep	CDS	15284203	15284399	.	+	2	Parent=Os09t0422500-01
Chr09	irgsp1_rep	CDS	15284481	15284834	.	+	0	Parent=Os09t0422500-01
Chr09	irgsp1_rep	CDS	15284938	15285525	.	+	0	Parent=Os09t0422500-01
Chr09	irgsp1_rep	three_prime_UTR	15285526	15285893	.	+	.	Parent=Os09t0422500-01
Chr09	irgsp1_rep	mRNA	15281516	15285525	.	-	.	ID=Os09t0422550-00;Name=Os09t0422550-00;Locus_id=Os09g0422550;Note=Hypothetical protein.;Transcript_evidence=tplb0049k18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0422550-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	15284941	15285525	.	-	.	Parent=Os09t0422550-00
Chr09	irgsp1_rep	five_prime_UTR	15284459	15284837	.	-	.	Parent=Os09t0422550-00
Chr09	irgsp1_rep	five_prime_UTR	15283910	15284386	.	-	.	Parent=Os09t0422550-00
Chr09	irgsp1_rep	five_prime_UTR	15283565	15283786	.	-	.	Parent=Os09t0422550-00
Chr09	irgsp1_rep	five_prime_UTR	15283221	15283482	.	-	.	Parent=Os09t0422550-00
Chr09	irgsp1_rep	five_prime_UTR	15283101	15283131	.	-	.	Parent=Os09t0422550-00
Chr09	irgsp1_rep	CDS	15282651	15283100	.	-	0	Parent=Os09t0422550-00
Chr09	irgsp1_rep	CDS	15281787	15281988	.	-	0	Parent=Os09t0422550-00
Chr09	irgsp1_rep	CDS	15281516	15281676	.	-	2	Parent=Os09t0422550-00
Chr09	irgsp1_rep	mRNA	15286328	15292578	.	-	.	ID=Os09t0422600-01;Name=Os09t0422600-01;Locus_id=Os09g0422600;Note=Protein of unknown function DUF566 family protein.;Transcript_evidence=AK100679 (DDBJ%2C Best hit);ORF_evidence=F2CSB0 (UniProt);InterPro=Protein of unknown function DUF566 (IPR007573);NIAS_FLcDNA=J023113H15;Expression=AK100679;TENOR=Os09t0422600-01;KEGG=Os09t0422600-01
Chr09	irgsp1_rep	five_prime_UTR	15292279	15292578	.	-	.	Parent=Os09t0422600-01
Chr09	irgsp1_rep	five_prime_UTR	15290820	15290894	.	-	.	Parent=Os09t0422600-01
Chr09	irgsp1_rep	CDS	15289581	15290819	.	-	0	Parent=Os09t0422600-01
Chr09	irgsp1_rep	CDS	15289059	15289178	.	-	0	Parent=Os09t0422600-01
Chr09	irgsp1_rep	CDS	15288268	15288384	.	-	0	Parent=Os09t0422600-01
Chr09	irgsp1_rep	CDS	15288068	15288157	.	-	0	Parent=Os09t0422600-01
Chr09	irgsp1_rep	CDS	15286950	15287057	.	-	0	Parent=Os09t0422600-01
Chr09	irgsp1_rep	CDS	15286725	15286790	.	-	0	Parent=Os09t0422600-01
Chr09	irgsp1_rep	three_prime_UTR	15286328	15286724	.	-	.	Parent=Os09t0422600-01
Chr09	irgsp1_rep	mRNA	15320490	15323851	.	+	.	ID=Os09t0423200-00;Name=Os09t0423200-00;Locus_id=Os09g0423200;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=BT062899 (DDBJ);ORF_evidence=NP_001175843.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os09t0423200-00;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	15320490	15323352	.	+	0	Parent=Os09t0423200-00
Chr09	irgsp1_rep	CDS	15323433	15323851	.	+	2	Parent=Os09t0423200-00
Chr09	irgsp1_rep	mRNA	15328754	15332301	.	+	.	ID=Os09t0423300-01;Name=Os09t0423300-01;Locus_id=Os09g0423300;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK099808 (DDBJ%2C Best hit);ORF_evidence=A2Z1D1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013098J22;Expression=AK099808;TENOR=Os09t0423300-01;KEGG=Os09t0423300-01
Chr09	irgsp1_rep	five_prime_UTR	15328754	15328923	.	+	.	Parent=Os09t0423300-01
Chr09	irgsp1_rep	five_prime_UTR	15329051	15329098	.	+	.	Parent=Os09t0423300-01
Chr09	irgsp1_rep	CDS	15329099	15331987	.	+	0	Parent=Os09t0423300-01
Chr09	irgsp1_rep	three_prime_UTR	15331988	15332301	.	+	.	Parent=Os09t0423300-01
Chr09	irgsp1_rep	mRNA	15329632	15332143	.	+	.	ID=Os09t0423300-02;Name=Os09t0423300-02;Locus_id=Os09g0423300;Note=Similar to pentatricopeptide (PPR) repeat-containing protein.;Transcript_evidence=AK066315 (DDBJ%2C Best hit);ORF_evidence=A2Z1D1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013067H08;Expression=AK066315;TENOR=Os09t0423300-02;KEGG=Os09t0423300-02
Chr09	irgsp1_rep	five_prime_UTR	15329632	15329632	.	+	.	Parent=Os09t0423300-02
Chr09	irgsp1_rep	CDS	15329633	15331987	.	+	0	Parent=Os09t0423300-02
Chr09	irgsp1_rep	three_prime_UTR	15331988	15332143	.	+	.	Parent=Os09t0423300-02
Chr09	irgsp1_rep	mRNA	15331502	15332301	.	+	.	ID=Os09t0423300-03;Name=Os09t0423300-03;Locus_id=Os09g0423300;Note=Hypothetical conserved gene.;Transcript_evidence=AK072601 (DDBJ%2C Best hit);ORF_evidence=A2Z1D1 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J023129E07;Expression=AK072601;TENOR=Os09t0423300-03;KEGG=Os09t0423300-03
Chr09	irgsp1_rep	CDS	15331502	15331987	.	+	0	Parent=Os09t0423300-03
Chr09	irgsp1_rep	three_prime_UTR	15331988	15332301	.	+	.	Parent=Os09t0423300-03
Chr09	irgsp1_rep	mRNA	15332960	15338795	.	+	.	ID=Os09t0423400-01;Name=Os09t0423400-01;Locus_id=Os09g0423400;Note=Biopterin transport-related protein BT1 family protein.;Transcript_evidence=AK072133 (DDBJ%2C Best hit);ORF_evidence=XP_002873479.1 (RefSeq);InterPro=Biopterin transport-related protein BT1 (IPR004324),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J013121C18;Expression=AK072133;TENOR=Os09t0423400-01;KEGG=Os09t0423400-01
Chr09	irgsp1_rep	five_prime_UTR	15332960	15333161	.	+	.	Parent=Os09t0423400-01
Chr09	irgsp1_rep	CDS	15333162	15333513	.	+	0	Parent=Os09t0423400-01
Chr09	irgsp1_rep	CDS	15334441	15334700	.	+	2	Parent=Os09t0423400-01
Chr09	irgsp1_rep	CDS	15334804	15334902	.	+	0	Parent=Os09t0423400-01
Chr09	irgsp1_rep	CDS	15335439	15335612	.	+	0	Parent=Os09t0423400-01
Chr09	irgsp1_rep	CDS	15337660	15338289	.	+	0	Parent=Os09t0423400-01
Chr09	irgsp1_rep	three_prime_UTR	15338290	15338795	.	+	.	Parent=Os09t0423400-01
Chr09	irgsp1_rep	mRNA	15333040	15338556	.	+	.	ID=Os09t0423400-02;Name=Os09t0423400-02;Locus_id=Os09g0423400;Note=Biopterin transport-related protein BT1 family protein.;Transcript_evidence=AK106683 (DDBJ%2C Best hit);ORF_evidence=XP_002873479.1 (RefSeq);InterPro=Biopterin transport-related protein BT1 (IPR004324),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=002-114-B08;Expression=AK106683;TENOR=Os09t0423400-02;KEGG=Os09t0423400-02
Chr09	irgsp1_rep	five_prime_UTR	15333040	15333161	.	+	.	Parent=Os09t0423400-02
Chr09	irgsp1_rep	CDS	15333162	15333513	.	+	0	Parent=Os09t0423400-02
Chr09	irgsp1_rep	CDS	15334441	15334700	.	+	2	Parent=Os09t0423400-02
Chr09	irgsp1_rep	CDS	15334804	15334902	.	+	0	Parent=Os09t0423400-02
Chr09	irgsp1_rep	CDS	15335439	15335612	.	+	0	Parent=Os09t0423400-02
Chr09	irgsp1_rep	CDS	15337660	15338289	.	+	0	Parent=Os09t0423400-02
Chr09	irgsp1_rep	three_prime_UTR	15338290	15338556	.	+	.	Parent=Os09t0423400-02
Chr09	irgsp1_rep	mRNA	15344684	15346841	.	+	.	ID=Os09t0423500-01;Name=Os09t0423500-01;Locus_id=Os09g0423500;Note=Peptidase A1 domain containing protein.;Transcript_evidence=AK120024 (DDBJ%2C Best hit);ORF_evidence=XP_002889266.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=002-186-C07;Expression=AK120024;TENOR=Os09t0423500-01;KEGG=Os09t0423500-01
Chr09	irgsp1_rep	five_prime_UTR	15344684	15344709	.	+	.	Parent=Os09t0423500-01
Chr09	irgsp1_rep	CDS	15344710	15344839	.	+	0	Parent=Os09t0423500-01
Chr09	irgsp1_rep	CDS	15345430	15346721	.	+	2	Parent=Os09t0423500-01
Chr09	irgsp1_rep	three_prime_UTR	15346722	15346841	.	+	.	Parent=Os09t0423500-01
Chr09	irgsp1_rep	mRNA	15345412	15346743	.	-	.	ID=Os09t0423550-00;Name=Os09t0423550-00;Locus_id=Os09g0423550;Note=Non-protein coding transcript.;Transcript_evidence=EU947645 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0423550-00
Chr09	irgsp1_rep	exon	15345412	15346743	.	-	.	Parent=Os09t0423550-00
Chr09	irgsp1_rep	mRNA	15349074	15355640	.	-	.	ID=Os09t0423600-01;Name=Os09t0423600-01;Locus_id=Os09g0423600;Note=Similar to Monogalactosyldiacylglycerol synthase (EC 2.4.1.46).;Transcript_evidence=AK243359 (DDBJ%2C Best hit);ORF_evidence=B4FBN5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: glycolipid biosynthetic process (GO:0009247),Biological Process: lipid glycosylation (GO:0030259),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Glycosyl transferase%2C family 28%2C C-terminal (IPR007235),Diacylglycerol glucosyltransferase%2C N-terminal (IPR009695);NIAS_FLcDNA=J100061G22;TENOR=Os09t0423600-01;KEGG=Os09t0423600-01 (EC:2.4.1.46)
Chr09	irgsp1_rep	five_prime_UTR	15355534	15355640	.	-	.	Parent=Os09t0423600-01
Chr09	irgsp1_rep	CDS	15355003	15355533	.	-	0	Parent=Os09t0423600-01
Chr09	irgsp1_rep	CDS	15352799	15352971	.	-	0	Parent=Os09t0423600-01
Chr09	irgsp1_rep	CDS	15351329	15351490	.	-	1	Parent=Os09t0423600-01
Chr09	irgsp1_rep	CDS	15351072	15351213	.	-	1	Parent=Os09t0423600-01
Chr09	irgsp1_rep	CDS	15350746	15350970	.	-	0	Parent=Os09t0423600-01
Chr09	irgsp1_rep	CDS	15350311	15350373	.	-	0	Parent=Os09t0423600-01
Chr09	irgsp1_rep	CDS	15350129	15350203	.	-	0	Parent=Os09t0423600-01
Chr09	irgsp1_rep	CDS	15349300	15349536	.	-	0	Parent=Os09t0423600-01
Chr09	irgsp1_rep	three_prime_UTR	15349074	15349299	.	-	.	Parent=Os09t0423600-01
Chr09	irgsp1_rep	mRNA	15358373	15360507	.	+	.	ID=Os09t0423700-01;Name=Os09t0423700-01;Locus_id=Os09g0423700;Note=Heat shock protein DnaJ%2C cysteine-rich region domain containing protein.;Transcript_evidence=AK061595 (DDBJ%2C Best hit);ORF_evidence=NP_001152460.1 (RefSeq);GO=Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C cysteine-rich domain (IPR001305);NIAS_FLcDNA=001-023-G05;Expression=AK061595;TENOR=Os09t0423700-01;KEGG=Os09t0423700-01
Chr09	irgsp1_rep	five_prime_UTR	15358373	15358543	.	+	.	Parent=Os09t0423700-01
Chr09	irgsp1_rep	CDS	15358544	15358768	.	+	0	Parent=Os09t0423700-01
Chr09	irgsp1_rep	CDS	15359970	15360119	.	+	0	Parent=Os09t0423700-01
Chr09	irgsp1_rep	CDS	15360302	15360379	.	+	0	Parent=Os09t0423700-01
Chr09	irgsp1_rep	three_prime_UTR	15360380	15360507	.	+	.	Parent=Os09t0423700-01
Chr09	irgsp1_rep	mRNA	15364933	15369587	.	+	.	ID=Os09t0423800-01;Name=Os09t0423800-01;Locus_id=Os09g0423800;CGSNL Gene Symbol=AP2/EREBP153;CGSNL Gene Name=APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 153;Oryzabase Gene Symbol Synonym(s)=AP2/EREBP#153;Oryzabase Gene Name Synonym(s)=APETALA2/ethylene-responsive element binding protein 153;Note=Similar to AP2-1 protein (Fragment).;Transcript_evidence=AK111617 (DDBJ%2C Best hit);ORF_evidence=A2Z1D6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J013102L16;Oryzabase=10670;Expression=AK111617;TENOR=Os09t0423800-01;KEGG=Os09t0423800-01
Chr09	irgsp1_rep	CDS	15364933	15365048	.	+	0	Parent=Os09t0423800-01
Chr09	irgsp1_rep	CDS	15365174	15365256	.	+	1	Parent=Os09t0423800-01
Chr09	irgsp1_rep	CDS	15365340	15365348	.	+	2	Parent=Os09t0423800-01
Chr09	irgsp1_rep	CDS	15365503	15365591	.	+	2	Parent=Os09t0423800-01
Chr09	irgsp1_rep	CDS	15366165	15366238	.	+	0	Parent=Os09t0423800-01
Chr09	irgsp1_rep	CDS	15366382	15366432	.	+	1	Parent=Os09t0423800-01
Chr09	irgsp1_rep	CDS	15366538	15366614	.	+	1	Parent=Os09t0423800-01
Chr09	irgsp1_rep	CDS	15368516	15369114	.	+	2	Parent=Os09t0423800-01
Chr09	irgsp1_rep	three_prime_UTR	15369115	15369587	.	+	.	Parent=Os09t0423800-01
Chr09	irgsp1_rep	mRNA	15366930	15369759	.	-	.	ID=Os09t0423902-01;Name=Os09t0423902-01;Locus_id=Os09g0423902;Note=Hypothetical protein.;Transcript_evidence=AK288754 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090066A06;TENOR=Os09t0423902-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	15368788	15369759	.	-	.	Parent=Os09t0423902-01
Chr09	irgsp1_rep	CDS	15368380	15368787	.	-	0	Parent=Os09t0423902-01
Chr09	irgsp1_rep	three_prime_UTR	15366930	15368379	.	-	.	Parent=Os09t0423902-01
Chr09	irgsp1_rep	mRNA	15381632	15384391	.	+	.	ID=Os09t0424200-01;Name=Os09t0424200-01;Locus_id=Os09g0424200;Note=Glutamine amidotransferase class-I domain containing protein.;Transcript_evidence=AK107431 (DDBJ%2C Best hit);ORF_evidence=A2Z1D7 (UniProt);InterPro=Glutamine amidotransferase type 1 (IPR017926);NIAS_FLcDNA=002-128-A07;Expression=AK107431;TENOR=Os09t0424200-01;KEGG=Os09t0424200-01
Chr09	irgsp1_rep	five_prime_UTR	15381632	15381831	.	+	.	Parent=Os09t0424200-01
Chr09	irgsp1_rep	CDS	15381832	15382197	.	+	0	Parent=Os09t0424200-01
Chr09	irgsp1_rep	CDS	15382296	15382643	.	+	0	Parent=Os09t0424200-01
Chr09	irgsp1_rep	CDS	15384012	15384116	.	+	0	Parent=Os09t0424200-01
Chr09	irgsp1_rep	three_prime_UTR	15384117	15384391	.	+	.	Parent=Os09t0424200-01
Chr09	irgsp1_rep	mRNA	15385742	15389096	.	-	.	ID=Os09t0424300-01;Name=Os09t0424300-01;Locus_id=Os09g0424300;Oryzabase Gene Symbol Synonym(s)=SAMDC1%2C SAMDC%2C OsSAMDC4;Oryzabase Gene Name Synonym(s)=S-adenosylmethionine decarboxylase 1;Note=S-adenosylmethionine decarboxylase.;Transcript_evidence=AK101535 (DDBJ%2C Best hit),AK067682 (DDBJ%2C Best hit),AK102445 (DDBJ%2C Best hit);ORF_evidence=A2Z1D8 (UniProt);GO=Biological Process: spermine biosynthetic process (GO:0006597),Biological Process: spermidine biosynthetic process (GO:0008295),Molecular Function: adenosylmethionine decarboxylase activity (GO:0004014);InterPro=S-adenosylmethionine decarboxylase (IPR001985),S-adenosylmethionine decarboxylase%2C core (IPR016067),S-adenosylmethionine decarboxylase%2C conserved site (IPR018166),S-adenosylmethionine decarboxylase subgroup (IPR018167);NIAS_FLcDNA=J033048C18,J013116D10,J033093N21;Oryzabase=14053;Expression=AK101535;TENOR=Os09t0424300-01;KEGG=Os09t0424300-01 (EC:4.1.1.50)
Chr09	irgsp1_rep	five_prime_UTR	15388901	15389096	.	-	.	Parent=Os09t0424300-01
Chr09	irgsp1_rep	five_prime_UTR	15387490	15387649	.	-	.	Parent=Os09t0424300-01
Chr09	irgsp1_rep	five_prime_UTR	15387200	15387386	.	-	.	Parent=Os09t0424300-01
Chr09	irgsp1_rep	CDS	15386021	15387199	.	-	0	Parent=Os09t0424300-01
Chr09	irgsp1_rep	three_prime_UTR	15385742	15386020	.	-	.	Parent=Os09t0424300-01
Chr09	irgsp1_rep	mRNA	15385723	15388367	.	-	.	ID=Os09t0424300-03;Name=Os09t0424300-03;Locus_id=Os09g0424300;Oryzabase Gene Symbol Synonym(s)=SAMDC1%2C SAMDC%2C OsSAMDC4;Oryzabase Gene Name Synonym(s)=S-adenosylmethionine decarboxylase 1;Note=S-adenosylmethionine decarboxylase.;Transcript_evidence=AK100397 (DDBJ%2C Best hit);ORF_evidence=Q6F4N6 (UniProt);GO=Biological Process: spermine biosynthetic process (GO:0006597),Biological Process: spermidine biosynthetic process (GO:0008295),Molecular Function: adenosylmethionine decarboxylase activity (GO:0004014);InterPro=S-adenosylmethionine decarboxylase (IPR001985),S-adenosylmethionine decarboxylase%2C core (IPR016067),S-adenosylmethionine decarboxylase%2C conserved site (IPR018166),S-adenosylmethionine decarboxylase subgroup (IPR018167);NIAS_FLcDNA=J023086M03;Oryzabase=14053;Expression=AK100397;TENOR=Os09t0424300-03;KEGG=Os09t0424300-03 (EC:4.1.1.50)
Chr09	irgsp1_rep	five_prime_UTR	15387490	15388367	.	-	.	Parent=Os09t0424300-03
Chr09	irgsp1_rep	five_prime_UTR	15387200	15387386	.	-	.	Parent=Os09t0424300-03
Chr09	irgsp1_rep	CDS	15386021	15387199	.	-	0	Parent=Os09t0424300-03
Chr09	irgsp1_rep	three_prime_UTR	15385723	15386020	.	-	.	Parent=Os09t0424300-03
Chr09	irgsp1_rep	mRNA	15385753	15387645	.	+	.	ID=Os09t0424401-00;Name=Os09t0424401-00;Locus_id=Os09g0424401;Note=Hypothetical gene.;Transcript_evidence=tplb0038f05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0424401-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	15385753	15386976	.	+	.	Parent=Os09t0424401-00
Chr09	irgsp1_rep	CDS	15386977	15387386	.	+	0	Parent=Os09t0424401-00
Chr09	irgsp1_rep	CDS	15387490	15387499	.	+	1	Parent=Os09t0424401-00
Chr09	irgsp1_rep	three_prime_UTR	15387500	15387645	.	+	.	Parent=Os09t0424401-00
Chr09	irgsp1_rep	mRNA	15400460	15400708	.	+	.	ID=Os09t0424501-00;Name=Os09t0424501-00;Locus_id=Os09g0424501;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os09t0424501-00;KEGG=Os09t0424501-00
Chr09	irgsp1_rep	CDS	15400460	15400708	.	+	0	Parent=Os09t0424501-00
Chr09	irgsp1_rep	mRNA	15400717	15406406	.	+	.	ID=Os09t0424600-01;Name=Os09t0424600-01;Locus_id=Os09g0424600;Note=HAD superfamily (subfamily IG) hydrolase%2C 5'-Nucleotidase protein.;Transcript_evidence=AK073882 (DDBJ%2C Best hit);ORF_evidence=NP_179967.3 (RefSeq);InterPro=HAD-superfamily hydrolase%2C subfamily IG%2C 5'-nucleotidase (IPR008380),Purine 5'-nucleotidase (IPR016695),HAD-like domain (IPR023214);NIAS_FLcDNA=J033073D14;Expression=AK073882;TENOR=Os09t0424600-01;KEGG=Os09t0424600-01
Chr09	irgsp1_rep	five_prime_UTR	15400717	15400773	.	+	.	Parent=Os09t0424600-01
Chr09	irgsp1_rep	CDS	15400774	15400858	.	+	0	Parent=Os09t0424600-01
Chr09	irgsp1_rep	CDS	15401001	15401153	.	+	2	Parent=Os09t0424600-01
Chr09	irgsp1_rep	CDS	15401274	15401410	.	+	2	Parent=Os09t0424600-01
Chr09	irgsp1_rep	CDS	15401507	15401656	.	+	0	Parent=Os09t0424600-01
Chr09	irgsp1_rep	CDS	15402056	15402157	.	+	0	Parent=Os09t0424600-01
Chr09	irgsp1_rep	CDS	15402483	15402647	.	+	0	Parent=Os09t0424600-01
Chr09	irgsp1_rep	CDS	15402834	15402944	.	+	0	Parent=Os09t0424600-01
Chr09	irgsp1_rep	CDS	15403053	15403150	.	+	0	Parent=Os09t0424600-01
Chr09	irgsp1_rep	CDS	15403355	15403478	.	+	1	Parent=Os09t0424600-01
Chr09	irgsp1_rep	CDS	15403707	15403796	.	+	0	Parent=Os09t0424600-01
Chr09	irgsp1_rep	CDS	15404206	15404250	.	+	0	Parent=Os09t0424600-01
Chr09	irgsp1_rep	CDS	15405116	15405436	.	+	0	Parent=Os09t0424600-01
Chr09	irgsp1_rep	CDS	15405880	15405909	.	+	0	Parent=Os09t0424600-01
Chr09	irgsp1_rep	three_prime_UTR	15405910	15406406	.	+	.	Parent=Os09t0424600-01
Chr09	irgsp1_rep	mRNA	15405381	15406408	.	+	.	ID=Os09t0424600-02;Name=Os09t0424600-02;Locus_id=Os09g0424600;Note=Similar to predicted protein.;Transcript_evidence=AK063811 (DDBJ%2C Best hit);ORF_evidence=NP_001170711.1 (RefSeq);NIAS_FLcDNA=001-121-G11;Expression=AK063811;TENOR=Os09t0424600-02;KEGG=Os09t0424600-02
Chr09	irgsp1_rep	five_prime_UTR	15405381	15405382	.	+	.	Parent=Os09t0424600-02
Chr09	irgsp1_rep	CDS	15405383	15405436	.	+	0	Parent=Os09t0424600-02
Chr09	irgsp1_rep	CDS	15405880	15405909	.	+	0	Parent=Os09t0424600-02
Chr09	irgsp1_rep	three_prime_UTR	15405910	15406408	.	+	.	Parent=Os09t0424600-02
Chr09	irgsp1_rep	mRNA	15400999	15406282	.	-	.	ID=Os09t0424650-00;Name=Os09t0424650-00;Locus_id=Os09g0424650;Note=Hypothetical protein.;Transcript_evidence=tplb0049b13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0424650-00
Chr09	irgsp1_rep	five_prime_UTR	15406249	15406282	.	-	.	Parent=Os09t0424650-00
Chr09	irgsp1_rep	CDS	15406003	15406248	.	-	0	Parent=Os09t0424650-00
Chr09	irgsp1_rep	three_prime_UTR	15405876	15406002	.	-	.	Parent=Os09t0424650-00
Chr09	irgsp1_rep	three_prime_UTR	15405100	15405432	.	-	.	Parent=Os09t0424650-00
Chr09	irgsp1_rep	three_prime_UTR	15404201	15404234	.	-	.	Parent=Os09t0424650-00
Chr09	irgsp1_rep	three_prime_UTR	15403705	15403790	.	-	.	Parent=Os09t0424650-00
Chr09	irgsp1_rep	three_prime_UTR	15403365	15403476	.	-	.	Parent=Os09t0424650-00
Chr09	irgsp1_rep	three_prime_UTR	15403051	15403156	.	-	.	Parent=Os09t0424650-00
Chr09	irgsp1_rep	three_prime_UTR	15402834	15402938	.	-	.	Parent=Os09t0424650-00
Chr09	irgsp1_rep	three_prime_UTR	15402481	15402647	.	-	.	Parent=Os09t0424650-00
Chr09	irgsp1_rep	three_prime_UTR	15402054	15402160	.	-	.	Parent=Os09t0424650-00
Chr09	irgsp1_rep	three_prime_UTR	15401505	15401654	.	-	.	Parent=Os09t0424650-00
Chr09	irgsp1_rep	three_prime_UTR	15401272	15401408	.	-	.	Parent=Os09t0424650-00
Chr09	irgsp1_rep	three_prime_UTR	15400999	15401151	.	-	.	Parent=Os09t0424650-00
Chr09	irgsp1_rep	mRNA	15407903	15410395	.	-	.	ID=Os09t0424701-00;Name=Os09t0424701-00;Locus_id=Os09g0424701;Oryzabase Gene Symbol Synonym(s)=OsGEX2%2C GEX2%2C OsSTA227;Oryzabase Gene Name Synonym(s)=Gamete Expressed 2;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8BFA7 (UniProt);Oryzabase=12512,19499;TENOR=Os09t0424701-00
Chr09	irgsp1_rep	CDS	15410152	15410395	.	-	0	Parent=Os09t0424701-00
Chr09	irgsp1_rep	CDS	15409797	15410029	.	-	2	Parent=Os09t0424701-00
Chr09	irgsp1_rep	CDS	15409312	15409465	.	-	0	Parent=Os09t0424701-00
Chr09	irgsp1_rep	CDS	15409059	15409120	.	-	2	Parent=Os09t0424701-00
Chr09	irgsp1_rep	CDS	15408840	15408931	.	-	0	Parent=Os09t0424701-00
Chr09	irgsp1_rep	CDS	15408558	15408656	.	-	1	Parent=Os09t0424701-00
Chr09	irgsp1_rep	CDS	15407903	15408122	.	-	1	Parent=Os09t0424701-00
Chr09	irgsp1_rep	mRNA	15416092	15420387	.	-	.	ID=Os09t0424850-01;Name=Os09t0424850-01;Locus_id=Os09g0424850;Note=Hypothetical protein.;Transcript_evidence=AK240810 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065006K24;TENOR=Os09t0424850-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	15420061	15420387	.	-	.	Parent=Os09t0424850-01
Chr09	irgsp1_rep	five_prime_UTR	15417948	15418037	.	-	.	Parent=Os09t0424850-01
Chr09	irgsp1_rep	five_prime_UTR	15417148	15417293	.	-	.	Parent=Os09t0424850-01
Chr09	irgsp1_rep	five_prime_UTR	15416974	15417041	.	-	.	Parent=Os09t0424850-01
Chr09	irgsp1_rep	CDS	15416713	15416973	.	-	0	Parent=Os09t0424850-01
Chr09	irgsp1_rep	three_prime_UTR	15416092	15416712	.	-	.	Parent=Os09t0424850-01
Chr09	irgsp1_rep	mRNA	15420766	15421567	.	-	.	ID=Os09t0425200-00;Name=Os09t0425200-00;Locus_id=Os09g0425200;Note=Conserved hypothetical protein.;Transcript_evidence=EU971096 (DDBJ);ORF_evidence=NP_001063219.1 (RefSeq);TENOR=Os09t0425200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	15421000	15421567	.	-	0	Parent=Os09t0425200-00
Chr09	irgsp1_rep	CDS	15420770	15420891	.	-	2	Parent=Os09t0425200-00
Chr09	irgsp1_rep	three_prime_UTR	15420766	15420769	.	-	.	Parent=Os09t0425200-00
Chr09	irgsp1_rep	mRNA	15423515	15424390	.	+	.	ID=Os09t0425300-00;Name=Os09t0425300-00;Locus_id=Os09g0425300;Note=Conserved hypothetical protein.;Transcript_evidence=EU942607 (DDBJ);ORF_evidence=NP_001063220.1 (RefSeq);TENOR=Os09t0425300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	15423515	15424390	.	+	0	Parent=Os09t0425300-00
Chr09	irgsp1_rep	mRNA	15426334	15426911	.	+	.	ID=Os09t0425400-00;Name=Os09t0425400-00;Locus_id=Os09g0425400;Note=Hypothetical protein.;Transcript_evidence=BT064010 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0425400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	15426334	15426337	.	+	.	Parent=Os09t0425400-00
Chr09	irgsp1_rep	CDS	15426338	15426718	.	+	0	Parent=Os09t0425400-00
Chr09	irgsp1_rep	three_prime_UTR	15426719	15426911	.	+	.	Parent=Os09t0425400-00
Chr09	irgsp1_rep	mRNA	15430853	15431370	.	+	.	ID=Os09t0425500-01;Name=Os09t0425500-01;Locus_id=Os09g0425500;Note=Hypothetical gene.;Transcript_evidence=AK062914 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-108-G12;Expression=AK062914;TENOR=Os09t0425500-01;KEGG=Os09t0425500-01
Chr09	irgsp1_rep	CDS	15430853	15431149	.	+	0	Parent=Os09t0425500-01
Chr09	irgsp1_rep	three_prime_UTR	15431150	15431370	.	+	.	Parent=Os09t0425500-01
Chr09	irgsp1_rep	mRNA	15438141	15440260	.	+	.	ID=Os09t0425700-01;Name=Os09t0425700-01;Locus_id=Os09g0425700;Note=Similar to Glycylpeptide N-tetradecanoyltransferase.;Transcript_evidence=AK066836 (DDBJ%2C Best hit);ORF_evidence=A2WUA4 (UniProt);NIAS_FLcDNA=J013088I01;TENOR=Os09t0425700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	15438141	15438870	.	+	.	Parent=Os09t0425700-01
Chr09	irgsp1_rep	five_prime_UTR	15438971	15439586	.	+	.	Parent=Os09t0425700-01
Chr09	irgsp1_rep	five_prime_UTR	15439684	15439730	.	+	.	Parent=Os09t0425700-01
Chr09	irgsp1_rep	CDS	15439731	15440042	.	+	0	Parent=Os09t0425700-01
Chr09	irgsp1_rep	three_prime_UTR	15440043	15440260	.	+	.	Parent=Os09t0425700-01
Chr09	irgsp1_rep	mRNA	15439590	15439904	.	-	.	ID=Os09t0425800-00;Name=Os09t0425800-00;Locus_id=Os09g0425800;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os09t0425800-00
Chr09	irgsp1_rep	CDS	15439590	15439904	.	-	0	Parent=Os09t0425800-00
Chr09	irgsp1_rep	mRNA	15444237	15446510	.	+	.	ID=Os09t0425900-01;Name=Os09t0425900-01;Locus_id=Os09g0425900;CGSNL Gene Symbol=TET13;CGSNL Gene Name=TETRASPANIN 13;Oryzabase Gene Symbol Synonym(s)=OsSAP%2C OsTET13;Oryzabase Gene Name Synonym(s)=senescence associated protein%2C tetraspanin 13;Note=Similar to senescence-associated protein DH.;Transcript_evidence=AK065366 (DDBJ%2C Best hit);ORF_evidence=NP_001105285.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Tetraspanin%2C subgroup (IPR000301),Tetraspanin (IPR018499),Tetraspanin%2C conserved site (IPR018503);NIAS_FLcDNA=J013020D06;Oryzabase=16276;Expression=AK065366;TENOR=Os09t0425900-01;KEGG=Os09t0425900-01
Chr09	irgsp1_rep	five_prime_UTR	15444237	15444341	.	+	.	Parent=Os09t0425900-01
Chr09	irgsp1_rep	CDS	15444342	15444863	.	+	0	Parent=Os09t0425900-01
Chr09	irgsp1_rep	three_prime_UTR	15444864	15446510	.	+	.	Parent=Os09t0425900-01
Chr09	irgsp1_rep	mRNA	15444240	15446516	.	+	.	ID=Os09t0425900-02;Name=Os09t0425900-02;Locus_id=Os09g0425900;CGSNL Gene Symbol=TET13;CGSNL Gene Name=TETRASPANIN 13;Oryzabase Gene Symbol Synonym(s)=OsSAP%2C OsTET13;Oryzabase Gene Name Synonym(s)=senescence associated protein%2C tetraspanin 13;Note=Similar to Senescence-associated protein 5.;Transcript_evidence=AK061801 (DDBJ%2C Best hit),AK106158 (DDBJ%2C Best hit);ORF_evidence=NP_001105285.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Tetraspanin%2C subgroup (IPR000301),Tetraspanin (IPR018499),Tetraspanin%2C conserved site (IPR018503);NIAS_FLcDNA=001-039-H10,001-208-A07;Oryzabase=16276;TENOR=Os09t0425900-02
Chr09	irgsp1_rep	five_prime_UTR	15444240	15444341	.	+	.	Parent=Os09t0425900-02
Chr09	irgsp1_rep	CDS	15444342	15444848	.	+	0	Parent=Os09t0425900-02
Chr09	irgsp1_rep	CDS	15445910	15446233	.	+	0	Parent=Os09t0425900-02
Chr09	irgsp1_rep	three_prime_UTR	15446234	15446516	.	+	.	Parent=Os09t0425900-02
Chr09	irgsp1_rep	mRNA	15447741	15449982	.	-	.	ID=Os09t0426000-01;Name=Os09t0426000-01;Locus_id=Os09g0426000;CGSNL Gene Symbol=UMAMIT13;CGSNL Gene Name=USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 13;Oryzabase Gene Symbol Synonym(s)=OsUMAMIT13;Oryzabase Gene Name Synonym(s)=Usually Multiple Acids Move In and out Transporter 13;Note=Protein of unknown function DUF6%2C transmembrane domain containing protein.;Transcript_evidence=AK073366 (DDBJ%2C Best hit);ORF_evidence=B8BFB2 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=J033030H08;Oryzabase=21381;Expression=AK073366;TENOR=Os09t0426000-01;KEGG=Os09t0426000-01
Chr09	irgsp1_rep	five_prime_UTR	15449949	15449982	.	-	.	Parent=Os09t0426000-01
Chr09	irgsp1_rep	CDS	15449668	15449948	.	-	0	Parent=Os09t0426000-01
Chr09	irgsp1_rep	CDS	15449458	15449571	.	-	1	Parent=Os09t0426000-01
Chr09	irgsp1_rep	CDS	15449023	15449236	.	-	1	Parent=Os09t0426000-01
Chr09	irgsp1_rep	CDS	15448698	15448859	.	-	0	Parent=Os09t0426000-01
Chr09	irgsp1_rep	CDS	15448440	15448591	.	-	0	Parent=Os09t0426000-01
Chr09	irgsp1_rep	CDS	15448115	15448293	.	-	1	Parent=Os09t0426000-01
Chr09	irgsp1_rep	CDS	15447954	15448009	.	-	2	Parent=Os09t0426000-01
Chr09	irgsp1_rep	three_prime_UTR	15447741	15447953	.	-	.	Parent=Os09t0426000-01
Chr09	irgsp1_rep	mRNA	15448692	15449964	.	+	.	ID=Os09t0426050-00;Name=Os09t0426050-00;Locus_id=Os09g0426050;Note=Hypothetical gene.;Transcript_evidence=BT084142 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0426050-00
Chr09	irgsp1_rep	five_prime_UTR	15448692	15448869	.	+	.	Parent=Os09t0426050-00
Chr09	irgsp1_rep	five_prime_UTR	15448950	15449250	.	+	.	Parent=Os09t0426050-00
Chr09	irgsp1_rep	CDS	15449251	15449252	.	+	0	Parent=Os09t0426050-00
Chr09	irgsp1_rep	CDS	15449396	15449964	.	+	1	Parent=Os09t0426050-00
Chr09	irgsp1_rep	mRNA	15451286	15456012	.	-	.	ID=Os09t0426100-01;Name=Os09t0426100-01;Locus_id=Os09g0426100;Note=Similar to cDNA%2C clone: J075189B12%2C full insert sequence.;Transcript_evidence=AK068810 (DDBJ%2C Best hit);ORF_evidence=B7F9F1 (UniProt);NIAS_FLcDNA=J013159I18;Expression=AK068810;TENOR=Os09t0426100-01;KEGG=Os09t0426100-01
Chr09	irgsp1_rep	five_prime_UTR	15455887	15456012	.	-	.	Parent=Os09t0426100-01
Chr09	irgsp1_rep	CDS	15455690	15455886	.	-	0	Parent=Os09t0426100-01
Chr09	irgsp1_rep	CDS	15455395	15455470	.	-	1	Parent=Os09t0426100-01
Chr09	irgsp1_rep	CDS	15455163	15455279	.	-	0	Parent=Os09t0426100-01
Chr09	irgsp1_rep	CDS	15452188	15452202	.	-	0	Parent=Os09t0426100-01
Chr09	irgsp1_rep	three_prime_UTR	15451971	15452187	.	-	.	Parent=Os09t0426100-01
Chr09	irgsp1_rep	three_prime_UTR	15451286	15451741	.	-	.	Parent=Os09t0426100-01
Chr09	irgsp1_rep	mRNA	15450531	15456012	.	-	.	ID=Os09t0426100-02;Name=Os09t0426100-02;Locus_id=Os09g0426100;Note=Similar to cDNA%2C clone: J075189B12%2C full insert sequence.;Transcript_evidence=AK105859 (DDBJ%2C Best hit);ORF_evidence=B7F9F1 (UniProt);NIAS_FLcDNA=001-203-H10;TENOR=Os09t0426100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	15455887	15456012	.	-	.	Parent=Os09t0426100-02
Chr09	irgsp1_rep	CDS	15455671	15455886	.	-	0	Parent=Os09t0426100-02
Chr09	irgsp1_rep	three_prime_UTR	15455395	15455670	.	-	.	Parent=Os09t0426100-02
Chr09	irgsp1_rep	three_prime_UTR	15455163	15455279	.	-	.	Parent=Os09t0426100-02
Chr09	irgsp1_rep	three_prime_UTR	15451971	15452202	.	-	.	Parent=Os09t0426100-02
Chr09	irgsp1_rep	three_prime_UTR	15451583	15451741	.	-	.	Parent=Os09t0426100-02
Chr09	irgsp1_rep	three_prime_UTR	15451321	15451472	.	-	.	Parent=Os09t0426100-02
Chr09	irgsp1_rep	three_prime_UTR	15450531	15450968	.	-	.	Parent=Os09t0426100-02
Chr09	irgsp1_rep	mRNA	15457699	15459213	.	-	.	ID=Os09t0426200-00;Name=Os09t0426200-00;Locus_id=Os09g0426200;Note=Similar to cDNA%2C clone: J075189B12%2C full insert sequence.;Transcript_evidence=ab initio prediction;ORF_evidence=B7F9F1 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);TENOR=Os09t0426200-00;KEGG=Os09t0426200-00
Chr09	irgsp1_rep	CDS	15459073	15459213	.	-	0	Parent=Os09t0426200-00
Chr09	irgsp1_rep	CDS	15458703	15458861	.	-	0	Parent=Os09t0426200-00
Chr09	irgsp1_rep	CDS	15458459	15458610	.	-	0	Parent=Os09t0426200-00
Chr09	irgsp1_rep	CDS	15457699	15457888	.	-	1	Parent=Os09t0426200-00
Chr09	irgsp1_rep	mRNA	15464740	15468833	.	-	.	ID=Os09t0426500-01;Name=Os09t0426500-01;Locus_id=Os09g0426500;CGSNL Gene Symbol=UMAMIT14;CGSNL Gene Name=USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 14;Oryzabase Gene Symbol Synonym(s)=OsUMAMIT14;Oryzabase Gene Name Synonym(s)=Usually Multiple Acids Move In and out Transporter 14;Note=Similar to Integral membrane protein DUF6 containing protein.;Transcript_evidence=AK242280 (DDBJ%2C Best hit);ORF_evidence=B6T7V1 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=J075189B12;Oryzabase=21382;TENOR=Os09t0426500-01;KEGG=Os09t0426500-01
Chr09	irgsp1_rep	five_prime_UTR	15468755	15468833	.	-	.	Parent=Os09t0426500-01
Chr09	irgsp1_rep	CDS	15468570	15468754	.	-	0	Parent=Os09t0426500-01
Chr09	irgsp1_rep	CDS	15468300	15468368	.	-	1	Parent=Os09t0426500-01
Chr09	irgsp1_rep	CDS	15467825	15467941	.	-	1	Parent=Os09t0426500-01
Chr09	irgsp1_rep	CDS	15465781	15466018	.	-	1	Parent=Os09t0426500-01
Chr09	irgsp1_rep	CDS	15465496	15465654	.	-	0	Parent=Os09t0426500-01
Chr09	irgsp1_rep	CDS	15465248	15465399	.	-	0	Parent=Os09t0426500-01
Chr09	irgsp1_rep	CDS	15464961	15465165	.	-	1	Parent=Os09t0426500-01
Chr09	irgsp1_rep	three_prime_UTR	15464740	15464960	.	-	.	Parent=Os09t0426500-01
Chr09	irgsp1_rep	mRNA	15465491	15468827	.	+	.	ID=Os09t0426600-00;Name=Os09t0426600-00;Locus_id=Os09g0426600;Note=Hypothetical protein.;Transcript_evidence=BT084142 (DDBJ);ORF_evidence=GeneMark;TENOR=Os09t0426600-00
Chr09	irgsp1_rep	five_prime_UTR	15465491	15465547	.	+	.	Parent=Os09t0426600-00
Chr09	irgsp1_rep	CDS	15465548	15465702	.	+	0	Parent=Os09t0426600-00
Chr09	irgsp1_rep	CDS	15465760	15466054	.	+	1	Parent=Os09t0426600-00
Chr09	irgsp1_rep	three_prime_UTR	15466055	15466063	.	+	.	Parent=Os09t0426600-00
Chr09	irgsp1_rep	three_prime_UTR	15467779	15468053	.	+	.	Parent=Os09t0426600-00
Chr09	irgsp1_rep	three_prime_UTR	15468520	15468827	.	+	.	Parent=Os09t0426600-00
Chr09	irgsp1_rep	mRNA	15493031	15497466	.	+	.	ID=Os09t0426800-01;Name=Os09t0426800-01;Locus_id=Os09g0426800;RAP-DB Gene Symbol Synonym(s)=WSL2%2C OsGL1-1;RAP-DB Gene Name Synonym(s)=WAX CRYSTAL-SPARSE LEAF 2%2C Glossy1-homologous gene 1%2C Wax crystal-sparse leaf2%2C Wax crystal-sparse leaf 2;CGSNL Gene Symbol=WSL2;CGSNL Gene Name=WAX CRYSTAL-SPARSE LEAF 2;Oryzabase Gene Symbol Synonym(s)=OsGL1-1%2C WSL2;Oryzabase Gene Name Synonym(s)=Glossy1-homologous gene 1%2C Wax crystal-sparse leaf2%2C Wax crystal-sparse leaf 2;Note=Homologue of WAX2/GL1%2C Synthesis of leaf cuticular wax;Transcript_evidence=AK060786;ORF_evidence=Q69PA8;GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Fatty acid hydroxylase (IPR006694),NAD(P)-binding domain (IPR016040),Uncharacterised domain Wax2%2C C-terminal (IPR021940);NIAS_FLcDNA=001-033-D05;Manual Curation=April 26%2C 2016;Literature_PMID=21809091,19322663;Oryzabase=15279;Expression=AK060786;TENOR=Os09t0426800-01;KEGG=Os09t0426800-01
Chr09	irgsp1_rep	five_prime_UTR	15493031	15493188	.	+	.	Parent=Os09t0426800-01
Chr09	irgsp1_rep	CDS	15493189	15493242	.	+	0	Parent=Os09t0426800-01
Chr09	irgsp1_rep	CDS	15493322	15493542	.	+	0	Parent=Os09t0426800-01
Chr09	irgsp1_rep	CDS	15493633	15493865	.	+	1	Parent=Os09t0426800-01
Chr09	irgsp1_rep	CDS	15493973	15494192	.	+	2	Parent=Os09t0426800-01
Chr09	irgsp1_rep	CDS	15494742	15494863	.	+	1	Parent=Os09t0426800-01
Chr09	irgsp1_rep	CDS	15495737	15495990	.	+	2	Parent=Os09t0426800-01
Chr09	irgsp1_rep	CDS	15496076	15496183	.	+	0	Parent=Os09t0426800-01
Chr09	irgsp1_rep	CDS	15496273	15496479	.	+	0	Parent=Os09t0426800-01
Chr09	irgsp1_rep	CDS	15496580	15496864	.	+	0	Parent=Os09t0426800-01
Chr09	irgsp1_rep	CDS	15496963	15497118	.	+	0	Parent=Os09t0426800-01
Chr09	irgsp1_rep	three_prime_UTR	15497119	15497466	.	+	.	Parent=Os09t0426800-01
Chr09	irgsp1_rep	mRNA	15502457	15508094	.	+	.	ID=Os09t0427100-01;Name=Os09t0427100-01;Locus_id=Os09g0427100;Note=Conserved hypothetical protein.;Transcript_evidence=AK100693 (DDBJ%2C Best hit);ORF_evidence=B8BFB6 (UniProt);NIAS_FLcDNA=J023114H23;Expression=AK100693;TENOR=Os09t0427100-01;KEGG=Os09t0427100-01
Chr09	irgsp1_rep	five_prime_UTR	15502457	15502775	.	+	.	Parent=Os09t0427100-01
Chr09	irgsp1_rep	five_prime_UTR	15502854	15502983	.	+	.	Parent=Os09t0427100-01
Chr09	irgsp1_rep	five_prime_UTR	15503673	15503787	.	+	.	Parent=Os09t0427100-01
Chr09	irgsp1_rep	five_prime_UTR	15505217	15505361	.	+	.	Parent=Os09t0427100-01
Chr09	irgsp1_rep	five_prime_UTR	15507328	15507332	.	+	.	Parent=Os09t0427100-01
Chr09	irgsp1_rep	CDS	15507333	15507595	.	+	0	Parent=Os09t0427100-01
Chr09	irgsp1_rep	CDS	15507714	15507771	.	+	1	Parent=Os09t0427100-01
Chr09	irgsp1_rep	three_prime_UTR	15507772	15508094	.	+	.	Parent=Os09t0427100-01
Chr09	irgsp1_rep	mRNA	15505395	15506163	.	-	.	ID=Os09t0427125-00;Name=Os09t0427125-00;Locus_id=Os09g0427125;Note=Hypothetical conserved gene.;Transcript_evidence=CT835830 (DDBJ%2C Best hit);ORF_evidence=B8BFB5 (UniProt);TENOR=Os09t0427125-00;KEGG=Os09t0427125-00
Chr09	irgsp1_rep	five_prime_UTR	15506097	15506163	.	-	.	Parent=Os09t0427125-00
Chr09	irgsp1_rep	CDS	15506096	15506096	.	-	0	Parent=Os09t0427125-00
Chr09	irgsp1_rep	CDS	15505825	15506057	.	-	2	Parent=Os09t0427125-00
Chr09	irgsp1_rep	three_prime_UTR	15505395	15505824	.	-	.	Parent=Os09t0427125-00
Chr09	irgsp1_rep	mRNA	15521970	15523890	.	-	.	ID=Os09t0427300-01;Name=Os09t0427300-01;Locus_id=Os09g0427300;Note=Similar to amino acid carrier.;Transcript_evidence=AK121239 (DDBJ%2C Best hit);ORF_evidence=NP_001149036.1 (RefSeq);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=J023096E02;TENOR=Os09t0427300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	15523002	15523890	.	-	.	Parent=Os09t0427300-01
Chr09	irgsp1_rep	CDS	15522959	15523001	.	-	0	Parent=Os09t0427300-01
Chr09	irgsp1_rep	CDS	15522729	15522871	.	-	2	Parent=Os09t0427300-01
Chr09	irgsp1_rep	CDS	15522348	15522626	.	-	0	Parent=Os09t0427300-01
Chr09	irgsp1_rep	three_prime_UTR	15521970	15522347	.	-	.	Parent=Os09t0427300-01
Chr09	irgsp1_rep	mRNA	15532906	15536088	.	-	.	ID=Os09t0427551-01;Name=Os09t0427551-01;Locus_id=Os09g0427551;Note=Hypothetical gene.;Transcript_evidence=AK242706 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090040B21;TENOR=Os09t0427551-01;KEGG=Os09t0427551-01
Chr09	irgsp1_rep	five_prime_UTR	15535783	15536088	.	-	.	Parent=Os09t0427551-01
Chr09	irgsp1_rep	CDS	15535378	15535782	.	-	0	Parent=Os09t0427551-01
Chr09	irgsp1_rep	CDS	15535009	15535291	.	-	0	Parent=Os09t0427551-01
Chr09	irgsp1_rep	CDS	15534649	15534908	.	-	2	Parent=Os09t0427551-01
Chr09	irgsp1_rep	three_prime_UTR	15532906	15534648	.	-	.	Parent=Os09t0427551-01
Chr09	irgsp1_rep	mRNA	15532892	15535767	.	+	.	ID=Os09t0427800-00;Name=Os09t0427800-00;Locus_id=Os09g0427800;CGSNL Gene Symbol=TPS9;CGSNL Gene Name=TREHALOSE-6-PHOSPHATE SYNTHASE 6;Oryzabase Gene Symbol Synonym(s)=OsTPS9;Note=Similar to Trehalose-6-phosphate synthase.;Transcript_evidence=AK366091 (DDBJ);ORF_evidence=B6T0F0 (UniProt);GO=Biological Process: trehalose biosynthetic process (GO:0005992),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Glycosyl transferase%2C family 20 (IPR001830),Trehalose-phosphatase (IPR003337),HAD-superfamily hydrolase%2C subfamily IIB (IPR006379),HAD-like domain (IPR023214);Oryzabase=9048;TENOR=Os09t0427800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	15532892	15532920	.	+	.	Parent=Os09t0427800-00
Chr09	irgsp1_rep	CDS	15532921	15534908	.	+	0	Parent=Os09t0427800-00
Chr09	irgsp1_rep	CDS	15535009	15535291	.	+	1	Parent=Os09t0427800-00
Chr09	irgsp1_rep	CDS	15535378	15535767	.	+	0	Parent=Os09t0427800-00
Chr09	irgsp1_rep	mRNA	15546372	15548565	.	-	.	ID=Os09t0428000-00;Name=Os09t0428000-00;Locus_id=Os09g0428000;CGSNL Gene Symbol=CSLC2;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE C2;Oryzabase Gene Symbol Synonym(s)=OsCslC2%2C OsCSLC2;Note=Glycosyl transferase%2C family 2 domain containing protein.;Transcript_evidence=AF435650 (DDBJ%2C Best hit);ORF_evidence=NP_194887.1 (RefSeq);InterPro=Glycosyl transferase%2C family 2 (IPR001173);Oryzabase=13889;Expression=AF435650;TENOR=Os09t0428000-00;KEGG=Os09t0428000-00
Chr09	irgsp1_rep	five_prime_UTR	15548565	15548565	.	-	.	Parent=Os09t0428000-00
Chr09	irgsp1_rep	CDS	15548466	15548564	.	-	0	Parent=Os09t0428000-00
Chr09	irgsp1_rep	CDS	15548063	15548371	.	-	0	Parent=Os09t0428000-00
Chr09	irgsp1_rep	CDS	15547693	15547983	.	-	0	Parent=Os09t0428000-00
Chr09	irgsp1_rep	CDS	15547484	15547597	.	-	0	Parent=Os09t0428000-00
Chr09	irgsp1_rep	CDS	15546753	15547397	.	-	0	Parent=Os09t0428000-00
Chr09	irgsp1_rep	three_prime_UTR	15546372	15546752	.	-	.	Parent=Os09t0428000-00
Chr09	irgsp1_rep	mRNA	15563299	15569624	.	+	.	ID=Os09t0428266-01;Name=Os09t0428266-01;Locus_id=Os09g0428266;Note=Conserved hypothetical protein.;Transcript_evidence=AK241163 (DDBJ%2C Best hit);ORF_evidence=NP_001175850.1 (RefSeq);NIAS_FLcDNA=J065116A07;TENOR=Os09t0428266-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	15563299	15563377	.	+	.	Parent=Os09t0428266-01
Chr09	irgsp1_rep	five_prime_UTR	15563451	15563523	.	+	.	Parent=Os09t0428266-01
Chr09	irgsp1_rep	five_prime_UTR	15564781	15564838	.	+	.	Parent=Os09t0428266-01
Chr09	irgsp1_rep	CDS	15564839	15564861	.	+	0	Parent=Os09t0428266-01
Chr09	irgsp1_rep	CDS	15569215	15569431	.	+	1	Parent=Os09t0428266-01
Chr09	irgsp1_rep	three_prime_UTR	15569432	15569624	.	+	.	Parent=Os09t0428266-01
Chr09	irgsp1_rep	mRNA	15564675	15569470	.	-	.	ID=Os09t0428300-00;Name=Os09t0428300-00;Locus_id=Os09g0428300;Note=Similar to Glutamate receptor.;Transcript_evidence=AK371221 (DDBJ);ORF_evidence=C5XZJ7 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: G-protein coupled receptor protein signaling pathway (GO:0007186),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Cellular Component: outer membrane-bounded periplasmic space (GO:0030288),Molecular Function: G-protein coupled receptor activity (GO:0004930),Molecular Function: ionotropic glutamate receptor activity (GO:0004970),Molecular Function: transporter activity (GO:0005215),Molecular Function: extracellular-glutamate-gated ion channel activity (GO:0005234);InterPro=GPCR%2C family 3 (IPR000337),Ionotropic glutamate receptor (IPR001320),Extracellular solute-binding protein%2C family 3 (IPR001638),Extracellular ligand-binding receptor (IPR001828),Ionotropic glutamate receptor%2C plant (IPR017103);TENOR=Os09t0428300-00
Chr09	irgsp1_rep	CDS	15569209	15569470	.	-	0	Parent=Os09t0428300-00
Chr09	irgsp1_rep	CDS	15567362	15568695	.	-	2	Parent=Os09t0428300-00
Chr09	irgsp1_rep	CDS	15565929	15566232	.	-	0	Parent=Os09t0428300-00
Chr09	irgsp1_rep	CDS	15565145	15565551	.	-	2	Parent=Os09t0428300-00
Chr09	irgsp1_rep	CDS	15564705	15565016	.	-	0	Parent=Os09t0428300-00
Chr09	irgsp1_rep	three_prime_UTR	15564675	15564704	.	-	.	Parent=Os09t0428300-00
Chr09	irgsp1_rep	mRNA	15572921	15580824	.	+	.	ID=Os09t0428500-01;Name=Os09t0428500-01;Locus_id=Os09g0428500;Note=Conserved hypothetical protein.;Transcript_evidence=AK120077 (DDBJ%2C Best hit);ORF_evidence=B9G3Q0 (UniProt);NIAS_FLcDNA=J013010O01;TENOR=Os09t0428500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	15572921	15572986	.	+	.	Parent=Os09t0428500-01
Chr09	irgsp1_rep	CDS	15572987	15573062	.	+	0	Parent=Os09t0428500-01
Chr09	irgsp1_rep	CDS	15573143	15573223	.	+	2	Parent=Os09t0428500-01
Chr09	irgsp1_rep	CDS	15573298	15573427	.	+	2	Parent=Os09t0428500-01
Chr09	irgsp1_rep	CDS	15580051	15580108	.	+	1	Parent=Os09t0428500-01
Chr09	irgsp1_rep	three_prime_UTR	15580109	15580339	.	+	.	Parent=Os09t0428500-01
Chr09	irgsp1_rep	three_prime_UTR	15580427	15580824	.	+	.	Parent=Os09t0428500-01
Chr09	irgsp1_rep	mRNA	15572944	15580856	.	+	.	ID=Os09t0428500-02;Name=Os09t0428500-02;Locus_id=Os09g0428500;Note=Conserved hypothetical protein.;Transcript_evidence=AK060993 (DDBJ%2C Best hit);ORF_evidence=B9G3Q0 (UniProt);NIAS_FLcDNA=006-203-D08;TENOR=Os09t0428500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	15572944	15572986	.	+	.	Parent=Os09t0428500-02
Chr09	irgsp1_rep	CDS	15572987	15573062	.	+	0	Parent=Os09t0428500-02
Chr09	irgsp1_rep	CDS	15573143	15573223	.	+	2	Parent=Os09t0428500-02
Chr09	irgsp1_rep	CDS	15573298	15573427	.	+	2	Parent=Os09t0428500-02
Chr09	irgsp1_rep	CDS	15580051	15580108	.	+	1	Parent=Os09t0428500-02
Chr09	irgsp1_rep	three_prime_UTR	15580109	15580339	.	+	.	Parent=Os09t0428500-02
Chr09	irgsp1_rep	three_prime_UTR	15580427	15580856	.	+	.	Parent=Os09t0428500-02
Chr09	irgsp1_rep	mRNA	15574058	15580334	.	-	.	ID=Os09t0428600-00;Name=Os09t0428600-00;Locus_id=Os09g0428600;Note=Similar to Glutamate receptor.;Transcript_evidence=AK362522 (DDBJ);ORF_evidence=C5XZJ7 (UniProt);GO=Biological Process: G-protein coupled receptor protein signaling pathway (GO:0007186),Cellular Component: integral to membrane (GO:0016021),Molecular Function: G-protein coupled receptor activity (GO:0004930);InterPro=GPCR%2C family 3 (IPR000337),Extracellular ligand-binding receptor (IPR001828);TENOR=Os09t0428600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	15580067	15580334	.	-	0	Parent=Os09t0428600-00
Chr09	irgsp1_rep	CDS	15576818	15578175	.	-	2	Parent=Os09t0428600-00
Chr09	irgsp1_rep	three_prime_UTR	15576811	15576817	.	-	.	Parent=Os09t0428600-00
Chr09	irgsp1_rep	three_prime_UTR	15576013	15576291	.	-	.	Parent=Os09t0428600-00
Chr09	irgsp1_rep	three_prime_UTR	15574998	15575404	.	-	.	Parent=Os09t0428600-00
Chr09	irgsp1_rep	three_prime_UTR	15574058	15574299	.	-	.	Parent=Os09t0428600-00
Chr09	irgsp1_rep	mRNA	15581067	15582821	.	-	.	ID=Os09t0428750-01;Name=Os09t0428750-01;Locus_id=Os09g0428750;Note=Conserved hypothetical protein.;Transcript_evidence=AK241051 (DDBJ%2C Best hit);ORF_evidence=B9G3Q1 (UniProt);NIAS_FLcDNA=J065062I24;TENOR=Os09t0428750-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	15582627	15582821	.	-	.	Parent=Os09t0428750-01
Chr09	irgsp1_rep	CDS	15582261	15582626	.	-	0	Parent=Os09t0428750-01
Chr09	irgsp1_rep	three_prime_UTR	15581067	15582260	.	-	.	Parent=Os09t0428750-01
Chr09	irgsp1_rep	mRNA	15583194	15586475	.	+	.	ID=Os09t0428900-01;Name=Os09t0428900-01;Locus_id=Os09g0428900;Note=Similar to Conserved protein.;Transcript_evidence=AK100970 (DDBJ%2C Best hit);ORF_evidence=B6U6F7 (UniProt);InterPro=Uncharacterised domain UPF0066 (IPR001378),Uncharacterised domain UPF0066%2C YaeB-like domain (IPR023370);NIAS_FLcDNA=J023143B18;Oryzabase=20220;Expression=AK100970;TENOR=Os09t0428900-01;KEGG=Os09t0428900-01
Chr09	irgsp1_rep	five_prime_UTR	15583194	15583226	.	+	.	Parent=Os09t0428900-01
Chr09	irgsp1_rep	CDS	15583227	15583296	.	+	0	Parent=Os09t0428900-01
Chr09	irgsp1_rep	CDS	15583397	15583518	.	+	2	Parent=Os09t0428900-01
Chr09	irgsp1_rep	CDS	15583609	15583730	.	+	0	Parent=Os09t0428900-01
Chr09	irgsp1_rep	CDS	15583833	15584028	.	+	1	Parent=Os09t0428900-01
Chr09	irgsp1_rep	CDS	15584163	15584255	.	+	0	Parent=Os09t0428900-01
Chr09	irgsp1_rep	CDS	15585054	15585113	.	+	0	Parent=Os09t0428900-01
Chr09	irgsp1_rep	CDS	15585214	15585288	.	+	0	Parent=Os09t0428900-01
Chr09	irgsp1_rep	CDS	15585723	15585803	.	+	0	Parent=Os09t0428900-01
Chr09	irgsp1_rep	CDS	15585913	15586269	.	+	0	Parent=Os09t0428900-01
Chr09	irgsp1_rep	three_prime_UTR	15586270	15586475	.	+	.	Parent=Os09t0428900-01
Chr09	irgsp1_rep	mRNA	15588269	15594378	.	-	.	ID=Os09t0429000-00;Name=Os09t0429000-00;Locus_id=Os09g0429000;Oryzabase Gene Symbol Synonym(s)=OsGLR2.1%2C GLR2.1%2C OsGLR2.2%2C GLR2.2;Oryzabase Gene Name Synonym(s)=Glutamate receptor homolog 2.1%2C GLUTAMATE RECEPTOR-LIKE 2.2;Note=Similar to Glutamate receptor.;Transcript_evidence=AK371221 (DDBJ);ORF_evidence=A2Z1H2 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Cellular Component: outer membrane-bounded periplasmic space (GO:0030288),Molecular Function: ionotropic glutamate receptor activity (GO:0004970),Molecular Function: transporter activity (GO:0005215),Molecular Function: extracellular-glutamate-gated ion channel activity (GO:0005234);InterPro=Ionotropic glutamate receptor (IPR001320),Extracellular solute-binding protein%2C family 3 (IPR001638),Extracellular ligand-binding receptor (IPR001828),Ionotropic glutamate receptor%2C plant (IPR017103);Oryzabase=15494;TENOR=Os09t0429000-00
Chr09	irgsp1_rep	CDS	15594114	15594378	.	-	0	Parent=Os09t0429000-00
Chr09	irgsp1_rep	CDS	15591712	15593048	.	-	2	Parent=Os09t0429000-00
Chr09	irgsp1_rep	CDS	15590210	15590513	.	-	0	Parent=Os09t0429000-00
Chr09	irgsp1_rep	CDS	15589607	15590013	.	-	2	Parent=Os09t0429000-00
Chr09	irgsp1_rep	CDS	15588270	15588758	.	-	0	Parent=Os09t0429000-00
Chr09	irgsp1_rep	three_prime_UTR	15588269	15588269	.	-	.	Parent=Os09t0429000-00
Chr09	irgsp1_rep	mRNA	15597954	15598619	.	+	.	ID=Os09t0429100-00;Name=Os09t0429100-00;Locus_id=Os09g0429100;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G3Q3 (UniProt);TENOR=Os09t0429100-00;KEGG=Os09t0429100-00
Chr09	irgsp1_rep	CDS	15597954	15598139	.	+	0	Parent=Os09t0429100-00
Chr09	irgsp1_rep	CDS	15598410	15598619	.	+	0	Parent=Os09t0429100-00
Chr09	irgsp1_rep	mRNA	15599149	15606593	.	-	.	ID=Os09t0429200-00;Name=Os09t0429200-00;Locus_id=Os09g0429200;Oryzabase Gene Symbol Synonym(s)=OsGLR2.2%2C GLR2.2%2C OsGLR2.1%2C GLR2.1;Oryzabase Gene Name Synonym(s)=Glutamate receptor homolog 2.2%2C GLUTAMATE RECEPTOR-LIKE 2.1;Note=Similar to Glutamate receptor.;Transcript_evidence=AK371221 (DDBJ);ORF_evidence=A2Z1H3 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Cellular Component: outer membrane-bounded periplasmic space (GO:0030288),Molecular Function: ionotropic glutamate receptor activity (GO:0004970),Molecular Function: transporter activity (GO:0005215),Molecular Function: extracellular-glutamate-gated ion channel activity (GO:0005234);InterPro=Ionotropic glutamate receptor (IPR001320),Extracellular solute-binding protein%2C family 3 (IPR001638),Extracellular ligand-binding receptor (IPR001828),Ionotropic glutamate receptor%2C plant (IPR017103);Oryzabase=15495;TENOR=Os09t0429200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	15606593	15606593	.	-	.	Parent=Os09t0429200-00
Chr09	irgsp1_rep	CDS	15606331	15606592	.	-	0	Parent=Os09t0429200-00
Chr09	irgsp1_rep	CDS	15602743	15604079	.	-	2	Parent=Os09t0429200-00
Chr09	irgsp1_rep	CDS	15602139	15602439	.	-	0	Parent=Os09t0429200-00
Chr09	irgsp1_rep	CDS	15600694	15601100	.	-	2	Parent=Os09t0429200-00
Chr09	irgsp1_rep	CDS	15599149	15599688	.	-	0	Parent=Os09t0429200-00
Chr09	irgsp1_rep	mRNA	15604066	15607061	.	+	.	ID=Os09t0429300-01;Name=Os09t0429300-01;Locus_id=Os09g0429300;Note=Non-protein coding transcript.;Transcript_evidence=AK064560 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-112-C09;TENOR=Os09t0429300-01
Chr09	irgsp1_rep	exon	15604066	15604773	.	+	.	Parent=Os09t0429300-01
Chr09	irgsp1_rep	exon	15605267	15605375	.	+	.	Parent=Os09t0429300-01
Chr09	irgsp1_rep	exon	15606399	15607061	.	+	.	Parent=Os09t0429300-01
Chr09	irgsp1_rep	mRNA	15609865	15616608	.	+	.	ID=Os09t0429350-01;Name=Os09t0429350-01;Locus_id=Os09g0429350;Note=Hypothetical conserved gene.;Transcript_evidence=AK241773 (DDBJ%2C Best hit);ORF_evidence=Q69L08 (UniProt);NIAS_FLcDNA=J065205M18;TENOR=Os09t0429350-01;KEGG=Os09t0429350-01
Chr09	irgsp1_rep	five_prime_UTR	15609865	15609868	.	+	.	Parent=Os09t0429350-01
Chr09	irgsp1_rep	CDS	15609869	15610261	.	+	0	Parent=Os09t0429350-01
Chr09	irgsp1_rep	CDS	15610614	15610682	.	+	0	Parent=Os09t0429350-01
Chr09	irgsp1_rep	three_prime_UTR	15610683	15610814	.	+	.	Parent=Os09t0429350-01
Chr09	irgsp1_rep	three_prime_UTR	15610977	15611096	.	+	.	Parent=Os09t0429350-01
Chr09	irgsp1_rep	three_prime_UTR	15616152	15616608	.	+	.	Parent=Os09t0429350-01
Chr09	irgsp1_rep	mRNA	15610715	15616401	.	-	.	ID=Os09t0429400-00;Name=Os09t0429400-00;Locus_id=Os09g0429400;Oryzabase Gene Symbol Synonym(s)=OsGLR2.3%2C GLR2.3;Oryzabase Gene Name Synonym(s)=Glutamate receptor homolog 2.3%2C GLUTAMATE RECEPTOR-LIKE 2.3;Note=Similar to Glutamate receptor.;Transcript_evidence=AK371221 (DDBJ);ORF_evidence=B8BFC5 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Cellular Component: outer membrane-bounded periplasmic space (GO:0030288),Molecular Function: ionotropic glutamate receptor activity (GO:0004970),Molecular Function: transporter activity (GO:0005215),Molecular Function: extracellular-glutamate-gated ion channel activity (GO:0005234);InterPro=Ionotropic glutamate receptor (IPR001320),Extracellular solute-binding protein%2C family 3 (IPR001638),Extracellular ligand-binding receptor (IPR001828),Ionotropic glutamate receptor%2C plant (IPR017103);Oryzabase=15496;TENOR=Os09t0429400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	15616143	15616401	.	-	0	Parent=Os09t0429400-00
Chr09	irgsp1_rep	CDS	15614072	15615408	.	-	2	Parent=Os09t0429400-00
Chr09	irgsp1_rep	CDS	15613189	15613492	.	-	0	Parent=Os09t0429400-00
Chr09	irgsp1_rep	CDS	15612503	15612909	.	-	2	Parent=Os09t0429400-00
Chr09	irgsp1_rep	CDS	15610715	15611212	.	-	0	Parent=Os09t0429400-00
Chr09	irgsp1_rep	mRNA	15620335	15625678	.	-	.	ID=Os09t0429500-00;Name=Os09t0429500-00;Locus_id=Os09g0429500;Oryzabase Gene Symbol Synonym(s)=OsGLR2.4%2C GLR2.4;Oryzabase Gene Name Synonym(s)=Glutamate receptor homolog 2.4%2C GLUTAMATE RECEPTOR-LIKE 2.4;Note=Similar to Glutamate receptor.;Transcript_evidence=AK371221 (DDBJ);ORF_evidence=B9G3Q7 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Cellular Component: outer membrane-bounded periplasmic space (GO:0030288),Molecular Function: ionotropic glutamate receptor activity (GO:0004970),Molecular Function: transporter activity (GO:0005215),Molecular Function: extracellular-glutamate-gated ion channel activity (GO:0005234);InterPro=Ionotropic glutamate receptor (IPR001320),Extracellular solute-binding protein%2C family 3 (IPR001638),Extracellular ligand-binding receptor (IPR001828),Ionotropic glutamate receptor%2C plant (IPR017103);Oryzabase=15497;TENOR=Os09t0429500-00
Chr09	irgsp1_rep	CDS	15625420	15625678	.	-	0	Parent=Os09t0429500-00
Chr09	irgsp1_rep	CDS	15623386	15624716	.	-	2	Parent=Os09t0429500-00
Chr09	irgsp1_rep	CDS	15622794	15623097	.	-	0	Parent=Os09t0429500-00
Chr09	irgsp1_rep	CDS	15621923	15622329	.	-	2	Parent=Os09t0429500-00
Chr09	irgsp1_rep	CDS	15620335	15620874	.	-	0	Parent=Os09t0429500-00
Chr09	irgsp1_rep	mRNA	15628357	15631501	.	-	.	ID=Os09t0429600-01;Name=Os09t0429600-01;Locus_id=Os09g0429600;Note=Non-protein coding transcript.;Transcript_evidence=AK073174 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J033022O16;TENOR=Os09t0429600-01
Chr09	irgsp1_rep	exon	15628357	15631501	.	-	.	Parent=Os09t0429600-01
Chr09	irgsp1_rep	mRNA	15633641	15633977	.	+	.	ID=Os09t0429766-00;Name=Os09t0429766-00;Locus_id=Os09g0429766;Note=Hypothetical protein.;Transcript_evidence=EU953775 (DDBJ);ORF_evidence=GeneMark;TENOR=Os09t0429766-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	15633641	15633977	.	+	0	Parent=Os09t0429766-00
Chr09	irgsp1_rep	mRNA	15698802	15699260	.	+	.	ID=Os09t0430600-00;Name=Os09t0430600-00;Locus_id=Os09g0430600;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q69NB4 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);TENOR=Os09t0430600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	15698802	15699260	.	+	0	Parent=Os09t0430600-00
Chr09	irgsp1_rep	mRNA	15711265	15711801	.	-	.	ID=Os09t0430701-00;Name=Os09t0430701-00;Locus_id=Os09g0430701;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q69NB2 (UniProt);TENOR=Os09t0430701-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	15711265	15711801	.	-	0	Parent=Os09t0430701-00
Chr09	irgsp1_rep	mRNA	15750243	15754544	.	-	.	ID=Os09t0431050-00;Name=Os09t0431050-00;Locus_id=Os09g0431050;Note=Hypothetical gene.;Transcript_evidence=AK248151 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0431050-00;KEGG=Os09t0431050-00
Chr09	irgsp1_rep	five_prime_UTR	15754543	15754544	.	-	.	Parent=Os09t0431050-00
Chr09	irgsp1_rep	CDS	15754320	15754542	.	-	0	Parent=Os09t0431050-00
Chr09	irgsp1_rep	CDS	15753532	15754037	.	-	2	Parent=Os09t0431050-00
Chr09	irgsp1_rep	CDS	15750382	15750423	.	-	0	Parent=Os09t0431050-00
Chr09	irgsp1_rep	three_prime_UTR	15750243	15750381	.	-	.	Parent=Os09t0431050-00
Chr09	irgsp1_rep	mRNA	15752949	15762817	.	+	.	ID=Os09t0431100-01;Name=Os09t0431100-01;Locus_id=Os09g0431100;Oryzabase Gene Symbol Synonym(s)=OsGLR1.3%2C GLR1.3%2C OsGLR1.1%2C GLR1.1;Oryzabase Gene Name Synonym(s)=Glutamate receptor homolog 1.3%2C GLUTAMATE RECEPTOR-LIKE 1.1;Note=GPCR%2C family 3%2C metabotropic glutamate receptor-like protein.;Transcript_evidence=AK110224 (DDBJ%2C Best hit);ORF_evidence=B8BFC6 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Cellular Component: outer membrane-bounded periplasmic space (GO:0030288),Molecular Function: ionotropic glutamate receptor activity (GO:0004970),Molecular Function: transporter activity (GO:0005215),Molecular Function: extracellular-glutamate-gated ion channel activity (GO:0005234);InterPro=Ionotropic glutamate receptor (IPR001320),Extracellular solute-binding protein%2C family 3 (IPR001638),Extracellular ligand-binding receptor (IPR001828),Ionotropic glutamate receptor%2C plant (IPR017103);NIAS_FLcDNA=002-162-E05;Oryzabase=15493;Expression=AK110224;TENOR=Os09t0431100-01;KEGG=Os09t0431100-01
Chr09	irgsp1_rep	five_prime_UTR	15752949	15753013	.	+	.	Parent=Os09t0431100-01
Chr09	irgsp1_rep	CDS	15753014	15753266	.	+	0	Parent=Os09t0431100-01
Chr09	irgsp1_rep	CDS	15753350	15754662	.	+	2	Parent=Os09t0431100-01
Chr09	irgsp1_rep	CDS	15761265	15762566	.	+	0	Parent=Os09t0431100-01
Chr09	irgsp1_rep	three_prime_UTR	15762567	15762817	.	+	.	Parent=Os09t0431100-01
Chr09	irgsp1_rep	mRNA	15765945	15770717	.	+	.	ID=Os09t0431200-01;Name=Os09t0431200-01;Locus_id=Os09g0431200;Oryzabase Gene Symbol Synonym(s)=OsGLR1.1%2C GLR1.1%2C OsGLR1.2%2C GLR1.2;Oryzabase Gene Name Synonym(s)=Glutamate receptor homolog 1.1%2C GLUTAMATE RECEPTOR-LIKE 1.2;Note=GPCR%2C family 3%2C metabotropic glutamate receptor-like protein.;Transcript_evidence=AK073894 (DDBJ%2C Best hit);ORF_evidence=A2Z1I3 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Cellular Component: outer membrane-bounded periplasmic space (GO:0030288),Molecular Function: ionotropic glutamate receptor activity (GO:0004970),Molecular Function: transporter activity (GO:0005215),Molecular Function: extracellular-glutamate-gated ion channel activity (GO:0005234);InterPro=Ionotropic glutamate receptor (IPR001320),Extracellular solute-binding protein%2C family 3 (IPR001638),Extracellular ligand-binding receptor (IPR001828),Ionotropic glutamate receptor%2C plant (IPR017103);NIAS_FLcDNA=J033072I09;Oryzabase=15491;Expression=AK073894;TENOR=Os09t0431200-01;KEGG=Os09t0431200-01
Chr09	irgsp1_rep	five_prime_UTR	15765945	15766226	.	+	.	Parent=Os09t0431200-01
Chr09	irgsp1_rep	CDS	15766227	15766542	.	+	0	Parent=Os09t0431200-01
Chr09	irgsp1_rep	CDS	15767266	15768554	.	+	2	Parent=Os09t0431200-01
Chr09	irgsp1_rep	CDS	15769061	15769768	.	+	0	Parent=Os09t0431200-01
Chr09	irgsp1_rep	CDS	15770020	15770559	.	+	0	Parent=Os09t0431200-01
Chr09	irgsp1_rep	three_prime_UTR	15770560	15770717	.	+	.	Parent=Os09t0431200-01
Chr09	irgsp1_rep	mRNA	15771483	15772929	.	-	.	ID=Os09t0431300-00;Name=Os09t0431300-00;Locus_id=Os09g0431300;Note=Similar to MYB transcription factor MYB71 (Fragment).;Transcript_evidence=AF099376 (DDBJ);ORF_evidence=Q0PJD1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),MYB-like (IPR017877),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);TENOR=Os09t0431300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	15772460	15772929	.	-	0	Parent=Os09t0431300-00
Chr09	irgsp1_rep	CDS	15771483	15772350	.	-	1	Parent=Os09t0431300-00
Chr09	irgsp1_rep	mRNA	15781382	15784882	.	-	.	ID=Os09t0431500-01;Name=Os09t0431500-01;Locus_id=Os09g0431500;Note=Similar to TATA box-binding protein associated factor 10.;Transcript_evidence=AK103717 (DDBJ%2C Best hit);ORF_evidence=NP_001148356.1 (RefSeq);GO=Biological Process: transcription initiation%2C DNA-dependent (GO:0006352),Cellular Component: nucleus (GO:0005634);InterPro=Transcription initiation factor TFIID%2C 23-30kDa subunit (IPR003923);NIAS_FLcDNA=J033138A01;Expression=AK103717;TENOR=Os09t0431500-01;KEGG=Os09t0431500-01
Chr09	irgsp1_rep	five_prime_UTR	15784732	15784882	.	-	.	Parent=Os09t0431500-01
Chr09	irgsp1_rep	CDS	15784552	15784731	.	-	0	Parent=Os09t0431500-01
Chr09	irgsp1_rep	CDS	15784391	15784455	.	-	0	Parent=Os09t0431500-01
Chr09	irgsp1_rep	CDS	15783987	15784049	.	-	1	Parent=Os09t0431500-01
Chr09	irgsp1_rep	CDS	15783346	15783403	.	-	1	Parent=Os09t0431500-01
Chr09	irgsp1_rep	CDS	15783208	15783258	.	-	0	Parent=Os09t0431500-01
Chr09	irgsp1_rep	CDS	15781695	15781775	.	-	0	Parent=Os09t0431500-01
Chr09	irgsp1_rep	three_prime_UTR	15781382	15781694	.	-	.	Parent=Os09t0431500-01
Chr09	irgsp1_rep	mRNA	15781476	15784726	.	-	.	ID=Os09t0431500-02;Name=Os09t0431500-02;Locus_id=Os09g0431500;Note=Similar to transcription initiation factor TFIID subunit 10.;Transcript_evidence=AK064713 (DDBJ%2C Best hit);ORF_evidence=NP_001148356.1 (RefSeq);GO=Biological Process: transcription initiation%2C DNA-dependent (GO:0006352),Cellular Component: nucleus (GO:0005634);InterPro=Transcription initiation factor TFIID%2C 23-30kDa subunit (IPR003923);NIAS_FLcDNA=002-118-D01;Expression=AK064713;TENOR=Os09t0431500-02;KEGG=Os09t0431500-02
Chr09	irgsp1_rep	five_prime_UTR	15784690	15784726	.	-	.	Parent=Os09t0431500-02
Chr09	irgsp1_rep	CDS	15784552	15784689	.	-	0	Parent=Os09t0431500-02
Chr09	irgsp1_rep	CDS	15784391	15784455	.	-	0	Parent=Os09t0431500-02
Chr09	irgsp1_rep	CDS	15783987	15784049	.	-	1	Parent=Os09t0431500-02
Chr09	irgsp1_rep	CDS	15783346	15783403	.	-	1	Parent=Os09t0431500-02
Chr09	irgsp1_rep	CDS	15783208	15783258	.	-	0	Parent=Os09t0431500-02
Chr09	irgsp1_rep	CDS	15781695	15781775	.	-	0	Parent=Os09t0431500-02
Chr09	irgsp1_rep	three_prime_UTR	15781476	15781694	.	-	.	Parent=Os09t0431500-02
Chr09	irgsp1_rep	mRNA	15790498	15800284	.	+	.	ID=Os09t0431600-00;Name=Os09t0431600-00;Locus_id=Os09g0431600;Oryzabase Gene Symbol Synonym(s)=OsCBSPPR1;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSPPR1%2C CBS domain containing protein OsCBSPPR1;Note=Cystathionine beta-synthase%2C core domain containing protein.;Transcript_evidence=BT062121 (DDBJ);ORF_evidence=B8BFC8 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein binding (GO:0005515);InterPro=Cystathionine beta-synthase%2C core (IPR000644),Pentatricopeptide repeat (IPR002885),Aldolase-type TIM barrel (IPR013785);Oryzabase=10345;TENOR=Os09t0431600-00;KEGG=Os09t0431600-00
Chr09	irgsp1_rep	five_prime_UTR	15790498	15790536	.	+	.	Parent=Os09t0431600-00
Chr09	irgsp1_rep	CDS	15790537	15790971	.	+	0	Parent=Os09t0431600-00
Chr09	irgsp1_rep	CDS	15792799	15792931	.	+	0	Parent=Os09t0431600-00
Chr09	irgsp1_rep	CDS	15793925	15794016	.	+	2	Parent=Os09t0431600-00
Chr09	irgsp1_rep	CDS	15794111	15794272	.	+	0	Parent=Os09t0431600-00
Chr09	irgsp1_rep	CDS	15794377	15794445	.	+	0	Parent=Os09t0431600-00
Chr09	irgsp1_rep	CDS	15794794	15794926	.	+	0	Parent=Os09t0431600-00
Chr09	irgsp1_rep	CDS	15795524	15795756	.	+	2	Parent=Os09t0431600-00
Chr09	irgsp1_rep	CDS	15797468	15797545	.	+	0	Parent=Os09t0431600-00
Chr09	irgsp1_rep	CDS	15798727	15798795	.	+	0	Parent=Os09t0431600-00
Chr09	irgsp1_rep	CDS	15798884	15799060	.	+	0	Parent=Os09t0431600-00
Chr09	irgsp1_rep	CDS	15800000	15800284	.	+	0	Parent=Os09t0431600-00
Chr09	irgsp1_rep	mRNA	15810286	15810823	.	-	.	ID=Os09t0431750-00;Name=Os09t0431750-00;Locus_id=Os09g0431750;Note=Hypothetical conserved gene.;Transcript_evidence=EU953775 (DDBJ);ORF_evidence=Q69MJ5 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);TENOR=Os09t0431750-00;KEGG=Os09t0431750-00
Chr09	irgsp1_rep	five_prime_UTR	15810747	15810823	.	-	.	Parent=Os09t0431750-00
Chr09	irgsp1_rep	CDS	15810339	15810746	.	-	0	Parent=Os09t0431750-00
Chr09	irgsp1_rep	three_prime_UTR	15810286	15810338	.	-	.	Parent=Os09t0431750-00
Chr09	irgsp1_rep	mRNA	15829339	15830158	.	-	.	ID=Os09t0431900-00;Name=Os09t0431900-00;Locus_id=Os09g0431900;CGSNL Gene Symbol=DLN224;CGSNL Gene Name=DLN REPRESSOR 224;Oryzabase Gene Symbol Synonym(s)=OsDLN224;Oryzabase Gene Name Synonym(s)=DLN repressor 224%2C DLN motif protein 224;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=CT835819 (DDBJ%2C Best hit);ORF_evidence=Q69MJ4 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087);Oryzabase=23243;TENOR=Os09t0431900-00;KEGG=Os09t0431900-00
Chr09	irgsp1_rep	five_prime_UTR	15829973	15830158	.	-	.	Parent=Os09t0431900-00
Chr09	irgsp1_rep	CDS	15829460	15829972	.	-	0	Parent=Os09t0431900-00
Chr09	irgsp1_rep	three_prime_UTR	15829339	15829459	.	-	.	Parent=Os09t0431900-00
Chr09	irgsp1_rep	mRNA	15840129	15842649	.	+	.	ID=Os09t0432033-01;Name=Os09t0432033-01;Locus_id=Os09g0432033;Note=Non-protein coding transcript.;Transcript_evidence=AK288690 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090060J07;TENOR=Os09t0432033-01
Chr09	irgsp1_rep	exon	15840129	15842649	.	+	.	Parent=Os09t0432033-01
Chr09	irgsp1_rep	mRNA	15862551	15863211	.	-	.	ID=Os09t0432231-00;Name=Os09t0432231-00;Locus_id=Os09g0432231;Note=Similar to Cold-regulated protein.;Transcript_evidence=AK360814 (DDBJ);ORF_evidence=Q9FSI8 (UniProt);TENOR=Os09t0432231-00
Chr09	irgsp1_rep	five_prime_UTR	15862912	15863211	.	-	.	Parent=Os09t0432231-00
Chr09	irgsp1_rep	CDS	15862728	15862911	.	-	0	Parent=Os09t0432231-00
Chr09	irgsp1_rep	CDS	15862551	15862648	.	-	2	Parent=Os09t0432231-00
Chr09	irgsp1_rep	mRNA	15868300	15869024	.	-	.	ID=Os09t0432300-01;Name=Os09t0432300-01;Locus_id=Os09g0432300;Note=Similar to AAA-type ATPase family protein.;Transcript_evidence=AK242363 (DDBJ%2C Best hit);ORF_evidence=NP_200556.1 (RefSeq);GO=Molecular Function: ATP binding (GO:0005524);InterPro=ATPase%2C AAA-type%2C core (IPR003959);NIAS_FLcDNA=J080031G07;TENOR=Os09t0432300-01;KEGG=Os09t0432300-01
Chr09	irgsp1_rep	five_prime_UTR	15869024	15869024	.	-	.	Parent=Os09t0432300-01
Chr09	irgsp1_rep	CDS	15868460	15869023	.	-	0	Parent=Os09t0432300-01
Chr09	irgsp1_rep	three_prime_UTR	15868300	15868459	.	-	.	Parent=Os09t0432300-01
Chr09	irgsp1_rep	mRNA	15883449	15885113	.	-	.	ID=Os09t0432601-01;Name=Os09t0432601-01;Locus_id=Os09g0432601;Note=Non-protein coding transcript.;Transcript_evidence=AK288663 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090057P06;TENOR=Os09t0432601-01
Chr09	irgsp1_rep	exon	15883449	15885113	.	-	.	Parent=Os09t0432601-01
Chr09	irgsp1_rep	mRNA	15888596	15890109	.	-	.	ID=Os09t0432700-01;Name=Os09t0432700-01;Locus_id=Os09g0432700;Note=Hypothetical protein.;Transcript_evidence=AK109890 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-149-E04;TENOR=Os09t0432700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	15890108	15890109	.	-	.	Parent=Os09t0432700-01
Chr09	irgsp1_rep	CDS	15889667	15890107	.	-	0	Parent=Os09t0432700-01
Chr09	irgsp1_rep	three_prime_UTR	15888596	15889666	.	-	.	Parent=Os09t0432700-01
Chr09	irgsp1_rep	mRNA	15891790	15892987	.	-	.	ID=Os09t0432900-02;Name=Os09t0432900-02;Locus_id=Os09g0432900;Note=Glycosyl transferase%2C family 31 protein.;Transcript_evidence=AK106115 (DDBJ%2C Best hit),AK060938 (DDBJ%2C Best hit);ORF_evidence=B8BFD7 (UniProt);NIAS_FLcDNA=001-207-E03,006-201-C03;Expression=AK106115;TENOR=Os09t0432900-02;KEGG=Os09t0432900-02
Chr09	irgsp1_rep	five_prime_UTR	15892931	15892987	.	-	.	Parent=Os09t0432900-02
Chr09	irgsp1_rep	CDS	15891926	15892930	.	-	0	Parent=Os09t0432900-02
Chr09	irgsp1_rep	three_prime_UTR	15891790	15891925	.	-	.	Parent=Os09t0432900-02
Chr09	irgsp1_rep	mRNA	15896876	15897948	.	-	.	ID=Os09t0433000-01;Name=Os09t0433000-01;Locus_id=Os09g0433000;Note=Glycosyl transferase%2C family 31 protein.;Transcript_evidence=AK069858 (DDBJ%2C Best hit);ORF_evidence=B6UCA7 (UniProt);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Glycosyl transferase%2C family 31 (IPR002659);NIAS_FLcDNA=J023035N15;Expression=AK069858;TENOR=Os09t0433000-01;KEGG=Os09t0433000-01
Chr09	irgsp1_rep	five_prime_UTR	15897911	15897948	.	-	.	Parent=Os09t0433000-01
Chr09	irgsp1_rep	CDS	15896969	15897910	.	-	0	Parent=Os09t0433000-01
Chr09	irgsp1_rep	three_prime_UTR	15896876	15896968	.	-	.	Parent=Os09t0433000-01
Chr09	irgsp1_rep	mRNA	15896393	15896926	.	-	.	ID=Os09t0433000-02;Name=Os09t0433000-02;Locus_id=Os09g0433000;Note=Hypothetical conserved gene.;Transcript_evidence=AK063243 (DDBJ%2C Best hit);ORF_evidence=Q69MI1 (UniProt);NIAS_FLcDNA=001-112-G06;Expression=AK063243;TENOR=Os09t0433000-02;KEGG=Os09t0433000-02
Chr09	irgsp1_rep	five_prime_UTR	15896671	15896926	.	-	.	Parent=Os09t0433000-02
Chr09	irgsp1_rep	CDS	15896518	15896670	.	-	0	Parent=Os09t0433000-02
Chr09	irgsp1_rep	three_prime_UTR	15896393	15896517	.	-	.	Parent=Os09t0433000-02
Chr09	irgsp1_rep	mRNA	15910204	15911196	.	-	.	ID=Os09t0433300-00;Name=Os09t0433300-00;Locus_id=Os09g0433300;Note=Similar to Hypro1.;Transcript_evidence=BT067918 (DDBJ);ORF_evidence=B6UCA7 (UniProt);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Glycosyl transferase%2C family 31 (IPR002659);TENOR=Os09t0433300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	15911145	15911196	.	-	.	Parent=Os09t0433300-00
Chr09	irgsp1_rep	CDS	15910227	15911144	.	-	0	Parent=Os09t0433300-00
Chr09	irgsp1_rep	three_prime_UTR	15910204	15910226	.	-	.	Parent=Os09t0433300-00
Chr09	irgsp1_rep	mRNA	15912453	15912912	.	-	.	ID=Os09t0433400-01;Name=Os09t0433400-01;Locus_id=Os09g0433400;Note=Hypothetical gene.;Transcript_evidence=AK062933 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-109-A11;Expression=AK062933;TENOR=Os09t0433400-01;KEGG=Os09t0433400-01
Chr09	irgsp1_rep	five_prime_UTR	15912912	15912912	.	-	.	Parent=Os09t0433400-01
Chr09	irgsp1_rep	CDS	15912453	15912911	.	-	0	Parent=Os09t0433400-01
Chr09	irgsp1_rep	mRNA	15916011	15916479	.	+	.	ID=Os09t0433600-01;Name=Os09t0433600-01;Locus_id=Os09g0433600;Note=Similar to Histone H4.;Transcript_evidence=AK058686 (DDBJ%2C Best hit);ORF_evidence=XP_002310853.1 (RefSeq);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H4 (IPR001951),Histone core (IPR007125),Histone-fold (IPR009072),Histone H4%2C conserved site (IPR019809);NIAS_FLcDNA=001-019-A10;Expression=AK058686;TENOR=Os09t0433600-01;KEGG=Os09t0433600-01
Chr09	irgsp1_rep	five_prime_UTR	15916011	15916060	.	+	.	Parent=Os09t0433600-01
Chr09	irgsp1_rep	CDS	15916061	15916372	.	+	0	Parent=Os09t0433600-01
Chr09	irgsp1_rep	three_prime_UTR	15916373	15916479	.	+	.	Parent=Os09t0433600-01
Chr09	irgsp1_rep	mRNA	15916518	15917594	.	-	.	ID=Os09t0433650-01;Name=Os09t0433650-01;Locus_id=Os09g0433650;Note=Tobacco mosaic virus coat protein family protein.;Transcript_evidence=AK288016 (DDBJ%2C Best hit);ORF_evidence=Q69PI1 (UniProt);NIAS_FLcDNA=J075122G22;TENOR=Os09t0433650-01;KEGG=Os09t0433650-01
Chr09	irgsp1_rep	five_prime_UTR	15917582	15917594	.	-	.	Parent=Os09t0433650-01
Chr09	irgsp1_rep	CDS	15916628	15917581	.	-	0	Parent=Os09t0433650-01
Chr09	irgsp1_rep	three_prime_UTR	15916518	15916627	.	-	.	Parent=Os09t0433650-01
Chr09	irgsp1_rep	mRNA	15921631	15924038	.	-	.	ID=Os09t0433700-01;Name=Os09t0433700-01;Locus_id=Os09g0433700;CGSNL Gene Symbol=PME27;CGSNL Gene Name=PECTIN METHYLESTERASE 27;Oryzabase Gene Symbol Synonym(s)=OsPME27;Oryzabase Gene Name Synonym(s)=pectin methylesterase 27;Note=Similar to Pectin methylesterase (Fragment).;Transcript_evidence=AK072369 (DDBJ%2C Best hit);ORF_evidence=A3BZ49 (UniProt);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectinesterase inhibitor (IPR006501),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),Pectinesterase%2C active site (IPR018040);NIAS_FLcDNA=J023064J16;Oryzabase=13191;Expression=AK072369;TENOR=Os09t0433700-01;KEGG=Os09t0433700-01
Chr09	irgsp1_rep	five_prime_UTR	15923901	15924038	.	-	.	Parent=Os09t0433700-01
Chr09	irgsp1_rep	CDS	15922748	15923900	.	-	0	Parent=Os09t0433700-01
Chr09	irgsp1_rep	CDS	15921984	15922684	.	-	2	Parent=Os09t0433700-01
Chr09	irgsp1_rep	three_prime_UTR	15921631	15921983	.	-	.	Parent=Os09t0433700-01
Chr09	irgsp1_rep	mRNA	15927027	15928052	.	+	.	ID=Os09t0433800-01;Name=Os09t0433800-01;Locus_id=Os09g0433800;Note=Similar to Senescence-associated protein SAG102.;Transcript_evidence=AK072558 (DDBJ%2C Best hit),AK104973 (DDBJ%2C Best hit);ORF_evidence=A3BZ50 (UniProt);InterPro=Protein of unknown function DUF581 (IPR007650);NIAS_FLcDNA=J023131I21,001-122-B03;Expression=AK072558;TENOR=Os09t0433800-01;KEGG=Os09t0433800-01
Chr09	irgsp1_rep	five_prime_UTR	15927027	15927155	.	+	.	Parent=Os09t0433800-01
Chr09	irgsp1_rep	CDS	15927156	15927502	.	+	0	Parent=Os09t0433800-01
Chr09	irgsp1_rep	CDS	15927614	15927791	.	+	1	Parent=Os09t0433800-01
Chr09	irgsp1_rep	three_prime_UTR	15927792	15928052	.	+	.	Parent=Os09t0433800-01
Chr09	irgsp1_rep	mRNA	15930510	15936552	.	+	.	ID=Os09t0433900-01;Name=Os09t0433900-01;Locus_id=Os09g0433900;CGSNL Gene Symbol=ALAAT5;CGSNL Gene Name=ALANINE AMINOTRANSFERASE 5;Oryzabase Gene Symbol Synonym(s)=OsEnS-128%2C OsAlaAT5%2C AlaAT5;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 128%2C Alanine transaminase 5%2C alanine-aminotransferase5;Note=Similar to Alanine aminotransferase 2 (EC 2.6.1.2) (GPT) (Glutamic--pyruvic transaminase 2) (Glutamic--alanine transaminase 2) (ALAAT-2).;Transcript_evidence=AK107237 (DDBJ%2C Best hit);ORF_evidence=NP_001147214.1 (RefSeq);GO=Biological Process: biosynthetic process (GO:0009058),Biological Process: 1-aminocyclopropane-1-carboxylate biosynthetic process (GO:0042218),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: 1-aminocyclopropane-1-carboxylate synthase activity (GO:0016847),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=1-aminocyclopropane-1-carboxylate synthase (IPR001176),Aminotransferase%2C class I/classII (IPR004839),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=002-125-F01;Oryzabase=18420;Expression=AK107237;TENOR=Os09t0433900-01;KEGG=Os09t0433900-01 (EC:2.6.1.2)
Chr09	irgsp1_rep	five_prime_UTR	15930510	15930605	.	+	.	Parent=Os09t0433900-01
Chr09	irgsp1_rep	CDS	15930606	15930656	.	+	0	Parent=Os09t0433900-01
Chr09	irgsp1_rep	CDS	15930792	15930842	.	+	0	Parent=Os09t0433900-01
Chr09	irgsp1_rep	CDS	15932407	15932457	.	+	0	Parent=Os09t0433900-01
Chr09	irgsp1_rep	CDS	15932562	15932627	.	+	0	Parent=Os09t0433900-01
Chr09	irgsp1_rep	CDS	15932724	15932785	.	+	0	Parent=Os09t0433900-01
Chr09	irgsp1_rep	CDS	15933290	15933368	.	+	1	Parent=Os09t0433900-01
Chr09	irgsp1_rep	CDS	15933490	15933594	.	+	0	Parent=Os09t0433900-01
Chr09	irgsp1_rep	CDS	15933683	15933793	.	+	0	Parent=Os09t0433900-01
Chr09	irgsp1_rep	CDS	15934143	15934280	.	+	0	Parent=Os09t0433900-01
Chr09	irgsp1_rep	CDS	15934472	15934546	.	+	0	Parent=Os09t0433900-01
Chr09	irgsp1_rep	CDS	15934662	15934782	.	+	0	Parent=Os09t0433900-01
Chr09	irgsp1_rep	CDS	15934847	15935001	.	+	2	Parent=Os09t0433900-01
Chr09	irgsp1_rep	CDS	15935256	15935330	.	+	0	Parent=Os09t0433900-01
Chr09	irgsp1_rep	CDS	15935775	15935978	.	+	0	Parent=Os09t0433900-01
Chr09	irgsp1_rep	CDS	15936071	15936187	.	+	0	Parent=Os09t0433900-01
Chr09	irgsp1_rep	three_prime_UTR	15936188	15936552	.	+	.	Parent=Os09t0433900-01
Chr09	irgsp1_rep	mRNA	15937013	15937693	.	-	.	ID=Os09t0434000-01;Name=Os09t0434000-01;Locus_id=Os09g0434000;CGSNL Gene Symbol=ARID5;CGSNL Gene Name=AT-RICH INTERACTION DOMAIN-CONTAINING PROTEIN 5;Oryzabase Gene Symbol Synonym(s)=OsARID;Oryzabase Gene Name Synonym(s)=AT-rich Interaction Domain-containing protein 5;Note=Zinc finger%2C FYVE/PHD-type domain containing protein.;Transcript_evidence=AK062791 (DDBJ%2C Best hit);ORF_evidence=Q7Y245 (UniProt);InterPro=Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=001-107-C02;Oryzabase=19995;TENOR=Os09t0434000-01;KEGG=Os09t0434000-01
Chr09	irgsp1_rep	CDS	15937638	15937693	.	-	0	Parent=Os09t0434000-01
Chr09	irgsp1_rep	CDS	15937450	15937540	.	-	1	Parent=Os09t0434000-01
Chr09	irgsp1_rep	CDS	15937240	15937371	.	-	0	Parent=Os09t0434000-01
Chr09	irgsp1_rep	three_prime_UTR	15937013	15937239	.	-	.	Parent=Os09t0434000-01
Chr09	irgsp1_rep	mRNA	15938709	15943746	.	-	.	ID=Os09t0434100-01;Name=Os09t0434100-01;Locus_id=Os09g0434100;CGSNL Gene Symbol=ARID5;CGSNL Gene Name=AT-RICH INTERACTION DOMAIN-CONTAINING PROTEIN 5;Oryzabase Gene Symbol Synonym(s)=OsARID;Oryzabase Gene Name Synonym(s)=AT-rich Interaction Domain-containing protein 5;Note=Conserved hypothetical protein.;Transcript_evidence=AK070207 (DDBJ%2C Best hit);ORF_evidence=B9G3S0 (UniProt);NIAS_FLcDNA=J023045L20;Oryzabase=19995;Expression=AK070207;TENOR=Os09t0434100-01;KEGG=Os09t0434100-01
Chr09	irgsp1_rep	five_prime_UTR	15942760	15943746	.	-	.	Parent=Os09t0434100-01
Chr09	irgsp1_rep	five_prime_UTR	15942590	15942667	.	-	.	Parent=Os09t0434100-01
Chr09	irgsp1_rep	CDS	15942428	15942589	.	-	0	Parent=Os09t0434100-01
Chr09	irgsp1_rep	CDS	15942149	15942340	.	-	0	Parent=Os09t0434100-01
Chr09	irgsp1_rep	CDS	15941832	15941885	.	-	0	Parent=Os09t0434100-01
Chr09	irgsp1_rep	CDS	15941413	15941501	.	-	0	Parent=Os09t0434100-01
Chr09	irgsp1_rep	CDS	15941085	15941337	.	-	1	Parent=Os09t0434100-01
Chr09	irgsp1_rep	CDS	15940850	15940987	.	-	0	Parent=Os09t0434100-01
Chr09	irgsp1_rep	three_prime_UTR	15940212	15940849	.	-	.	Parent=Os09t0434100-01
Chr09	irgsp1_rep	three_prime_UTR	15939719	15939854	.	-	.	Parent=Os09t0434100-01
Chr09	irgsp1_rep	three_prime_UTR	15939470	15939640	.	-	.	Parent=Os09t0434100-01
Chr09	irgsp1_rep	three_prime_UTR	15938709	15939159	.	-	.	Parent=Os09t0434100-01
Chr09	irgsp1_rep	mRNA	15944581	15947917	.	-	.	ID=Os09t0434200-01;Name=Os09t0434200-01;Locus_id=Os09g0434200;RAP-DB Gene Symbol Synonym(s)=OsDSG1;RAP-DB Gene Name Synonym(s)=Delayed Seed Germination 1;CGSNL Gene Symbol=DSG1;CGSNL Gene Name=DELAYED SEED GERMINATION 1;Oryzabase Gene Symbol Synonym(s)=OsDSG1%2C DSG1;Oryzabase Gene Name Synonym(s)=Delayed Seed Germination1%2C delayed seed germination 1;Note=RING finger E3 ligase%2C Ortholog of Arabidopsis ABI3-interacting protein 2 (AIP2)%2C Control of seed germination and stress responses%2C Regulation of ABA signaling in germinating seed;Transcript_evidence=AK103447;ORF_evidence=B7E748;InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841);NIAS_FLcDNA=J033129G15;Manual Curation=July 27%2C 2020;Literature_PMID=20878348;Oryzabase=18096;TENOR=Os09t0434200-01
Chr09	irgsp1_rep	five_prime_UTR	15947688	15947917	.	-	.	Parent=Os09t0434200-01
Chr09	irgsp1_rep	CDS	15947541	15947687	.	-	0	Parent=Os09t0434200-01
Chr09	irgsp1_rep	CDS	15946269	15946482	.	-	0	Parent=Os09t0434200-01
Chr09	irgsp1_rep	CDS	15945763	15946007	.	-	2	Parent=Os09t0434200-01
Chr09	irgsp1_rep	CDS	15944996	15945202	.	-	0	Parent=Os09t0434200-01
Chr09	irgsp1_rep	CDS	15944736	15944885	.	-	0	Parent=Os09t0434200-01
Chr09	irgsp1_rep	three_prime_UTR	15944581	15944735	.	-	.	Parent=Os09t0434200-01
Chr09	irgsp1_rep	mRNA	15944563	15947783	.	-	.	ID=Os09t0434200-02;Name=Os09t0434200-02;Locus_id=Os09g0434200;CGSNL Gene Symbol=DSG1;CGSNL Gene Name=DELAYED SEED GERMINATION 1;Oryzabase Gene Symbol Synonym(s)=OsDSG1%2C DSG1;Oryzabase Gene Name Synonym(s)=Delayed Seed Germination1%2C delayed seed germination 1;Note=Similar to ABI3-interacting protein 2-1 protein.;Transcript_evidence=AK062015 (DDBJ%2C Best hit);ORF_evidence=C0KTZ6 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=001-043-F05;Manual Curation=July 27%2C 2020;Oryzabase=18096;TENOR=Os09t0434200-02
Chr09	irgsp1_rep	five_prime_UTR	15947688	15947783	.	-	.	Parent=Os09t0434200-02
Chr09	irgsp1_rep	CDS	15947541	15947687	.	-	0	Parent=Os09t0434200-02
Chr09	irgsp1_rep	CDS	15946269	15946482	.	-	0	Parent=Os09t0434200-02
Chr09	irgsp1_rep	CDS	15945763	15946007	.	-	2	Parent=Os09t0434200-02
Chr09	irgsp1_rep	CDS	15944996	15945202	.	-	0	Parent=Os09t0434200-02
Chr09	irgsp1_rep	CDS	15944736	15944885	.	-	0	Parent=Os09t0434200-02
Chr09	irgsp1_rep	three_prime_UTR	15944563	15944735	.	-	.	Parent=Os09t0434200-02
Chr09	irgsp1_rep	mRNA	15959434	15962646	.	+	.	ID=Os09t0434500-01;Name=Os09t0434500-01;Locus_id=Os09g0434500;CGSNL Gene Symbol=ERF72;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 72;Oryzabase Gene Symbol Synonym(s)=OsEREBP%2C OsERF#072%2C OsERF072%2C OsERF72%2C AP2/EREBP#064%2C AP2/EREBP64%2C BIERF1%2C OsBIERF1%2C OsEBP2;Oryzabase Gene Name Synonym(s)=ethylene-responsive element-binding protein%2C ethylene response factor 72%2C benzothiadiazole (BTH)-induced ethylene responsive transcriptional factor 1%2C benzothiadiazole-induced ethylene responsive transcriptional factor 1%2C BTH-induced ERF transcriptional factor 1%2C APETALA2/ethylene-responsive element binding protein 64%2C ethylene-responsive-element binding protein2;Note=Similar to Ethylene response factor 2.;Transcript_evidence=AK111690 (DDBJ%2C Best hit),AK104576 (DDBJ%2C Best hit),AK104723 (DDBJ%2C Best hit);ORF_evidence=Q1ZZM5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J023008G03,006-307-A07,001-038-B05;Oryzabase=10230;TENOR=Os09t0434500-01
Chr09	irgsp1_rep	five_prime_UTR	15959434	15959541	.	+	.	Parent=Os09t0434500-01
Chr09	irgsp1_rep	CDS	15959542	15959869	.	+	0	Parent=Os09t0434500-01
Chr09	irgsp1_rep	CDS	15961383	15962245	.	+	2	Parent=Os09t0434500-01
Chr09	irgsp1_rep	three_prime_UTR	15962246	15962291	.	+	.	Parent=Os09t0434500-01
Chr09	irgsp1_rep	three_prime_UTR	15962391	15962646	.	+	.	Parent=Os09t0434500-01
Chr09	irgsp1_rep	mRNA	15978501	15981136	.	-	.	ID=Os09t0434600-02;Name=Os09t0434600-02;Locus_id=Os09g0434600;Note=Similar to glycosyltransferase family protein 2.;Transcript_evidence=AK069042 (DDBJ%2C Best hit),AK071264 (DDBJ%2C Best hit);ORF_evidence=NP_200878.2 (RefSeq);NIAS_FLcDNA=J023003L21,J023083M07;Expression=AK069042;TENOR=Os09t0434600-02;KEGG=Os09t0434600-02
Chr09	irgsp1_rep	five_prime_UTR	15981003	15981136	.	-	.	Parent=Os09t0434600-02
Chr09	irgsp1_rep	CDS	15980930	15981002	.	-	0	Parent=Os09t0434600-02
Chr09	irgsp1_rep	CDS	15980640	15980839	.	-	2	Parent=Os09t0434600-02
Chr09	irgsp1_rep	three_prime_UTR	15980605	15980639	.	-	.	Parent=Os09t0434600-02
Chr09	irgsp1_rep	three_prime_UTR	15978501	15980491	.	-	.	Parent=Os09t0434600-02
Chr09	irgsp1_rep	mRNA	15984331	15990757	.	-	.	ID=Os09t0434900-01;Name=Os09t0434900-01;Locus_id=Os09g0434900;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=AK120863 (DDBJ%2C Best hit);ORF_evidence=B9G3S2 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C C6HC-type (IPR002867),Zinc finger%2C RING-type%2C conserved site (IPR017907);NIAS_FLcDNA=J023025A08;Expression=AK120863;TENOR=Os09t0434900-01;KEGG=Os09t0434900-01
Chr09	irgsp1_rep	five_prime_UTR	15990676	15990757	.	-	.	Parent=Os09t0434900-01
Chr09	irgsp1_rep	CDS	15989945	15990675	.	-	0	Parent=Os09t0434900-01
Chr09	irgsp1_rep	CDS	15984719	15984878	.	-	1	Parent=Os09t0434900-01
Chr09	irgsp1_rep	three_prime_UTR	15984331	15984718	.	-	.	Parent=Os09t0434900-01
Chr09	irgsp1_rep	mRNA	15984598	15990697	.	-	.	ID=Os09t0434900-02;Name=Os09t0434900-02;Locus_id=Os09g0434900;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=AK109104 (DDBJ%2C Best hit);ORF_evidence=B9G3S2 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C C6HC-type (IPR002867),Zinc finger%2C RING-type%2C conserved site (IPR017907);NIAS_FLcDNA=002-155-B05;Expression=AK109104;TENOR=Os09t0434900-02;KEGG=Os09t0434900-02
Chr09	irgsp1_rep	five_prime_UTR	15990676	15990697	.	-	.	Parent=Os09t0434900-02
Chr09	irgsp1_rep	CDS	15989945	15990675	.	-	0	Parent=Os09t0434900-02
Chr09	irgsp1_rep	CDS	15984719	15984878	.	-	1	Parent=Os09t0434900-02
Chr09	irgsp1_rep	three_prime_UTR	15984598	15984718	.	-	.	Parent=Os09t0434900-02
Chr09	irgsp1_rep	mRNA	15989784	15991063	.	+	.	ID=Os09t0435100-01;Name=Os09t0435100-01;Locus_id=Os09g0435100;Note=Hypothetical gene.;Transcript_evidence=AK287656 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065097D11;TENOR=Os09t0435100-01;KEGG=Os09t0435100-01
Chr09	irgsp1_rep	five_prime_UTR	15989784	15989934	.	+	.	Parent=Os09t0435100-01
Chr09	irgsp1_rep	CDS	15989935	15990705	.	+	0	Parent=Os09t0435100-01
Chr09	irgsp1_rep	three_prime_UTR	15990706	15991063	.	+	.	Parent=Os09t0435100-01
Chr09	irgsp1_rep	mRNA	15991281	15996929	.	-	.	ID=Os09t0435250-00;Name=Os09t0435250-00;Locus_id=Os09g0435250;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G3S3 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C C6HC-type (IPR002867),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);TENOR=Os09t0435250-00
Chr09	irgsp1_rep	CDS	15995065	15996929	.	-	0	Parent=Os09t0435250-00
Chr09	irgsp1_rep	CDS	15993525	15993624	.	-	1	Parent=Os09t0435250-00
Chr09	irgsp1_rep	CDS	15991281	15991901	.	-	0	Parent=Os09t0435250-00
Chr09	irgsp1_rep	mRNA	16014134	16015414	.	+	.	ID=Os09t0435700-00;Name=Os09t0435700-00;Locus_id=Os09g0435700;Note=Hypothetical conserved gene.;Transcript_evidence=AK357963 (DDBJ);ORF_evidence=A3BZ60 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Lipase%2C GDXG%2C active site (IPR002168),Alpha/beta hydrolase fold-3 (IPR013094);TENOR=Os09t0435700-00;KEGG=Os09t0435700-00
Chr09	irgsp1_rep	CDS	16014134	16015414	.	+	0	Parent=Os09t0435700-00
Chr09	irgsp1_rep	mRNA	16029442	16035299	.	-	.	ID=Os09t0436000-01;Name=Os09t0436000-01;Locus_id=Os09g0436000;Note=Peptidase cysteine/serine%2C trypsin-like domain containing protein.;Transcript_evidence=AK240779 (DDBJ%2C Best hit);ORF_evidence=B9G3S6 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Peptidase cysteine/serine%2C trypsin-like (IPR009003);NIAS_FLcDNA=J053075F05;TENOR=Os09t0436000-01;KEGG=Os09t0436000-01
Chr09	irgsp1_rep	five_prime_UTR	16035041	16035299	.	-	.	Parent=Os09t0436000-01
Chr09	irgsp1_rep	five_prime_UTR	16034335	16034611	.	-	.	Parent=Os09t0436000-01
Chr09	irgsp1_rep	five_prime_UTR	16032190	16032282	.	-	.	Parent=Os09t0436000-01
Chr09	irgsp1_rep	CDS	16032181	16032189	.	-	0	Parent=Os09t0436000-01
Chr09	irgsp1_rep	CDS	16031526	16031938	.	-	0	Parent=Os09t0436000-01
Chr09	irgsp1_rep	CDS	16030465	16030693	.	-	1	Parent=Os09t0436000-01
Chr09	irgsp1_rep	CDS	16030134	16030355	.	-	0	Parent=Os09t0436000-01
Chr09	irgsp1_rep	three_prime_UTR	16030129	16030133	.	-	.	Parent=Os09t0436000-01
Chr09	irgsp1_rep	three_prime_UTR	16029442	16030038	.	-	.	Parent=Os09t0436000-01
Chr09	irgsp1_rep	mRNA	16038231	16040169	.	+	.	ID=Os09t0436200-01;Name=Os09t0436200-01;Locus_id=Os09g0436200;Note=Hypothetical protein.;Transcript_evidence=AK109570 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-131-H06;Expression=AK109570;TENOR=Os09t0436200-01;KEGG=Os09t0436200-01
Chr09	irgsp1_rep	five_prime_UTR	16038231	16038506	.	+	.	Parent=Os09t0436200-01
Chr09	irgsp1_rep	five_prime_UTR	16038791	16039253	.	+	.	Parent=Os09t0436200-01
Chr09	irgsp1_rep	CDS	16039254	16039487	.	+	0	Parent=Os09t0436200-01
Chr09	irgsp1_rep	three_prime_UTR	16039488	16040169	.	+	.	Parent=Os09t0436200-01
Chr09	irgsp1_rep	mRNA	16039122	16045463	.	-	.	ID=Os09t0436300-01;Name=Os09t0436300-01;Locus_id=Os09g0436300;Note=Peptidase%2C trypsin-like serine and cysteine domain containing protein.;Transcript_evidence=AK103151 (DDBJ%2C Best hit);ORF_evidence=XP_002454153.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Peptidase cysteine/serine%2C trypsin-like (IPR009003);NIAS_FLcDNA=J033120O07;Expression=AK103151;TENOR=Os09t0436300-01;KEGG=Os09t0436300-01
Chr09	irgsp1_rep	five_prime_UTR	16045333	16045463	.	-	.	Parent=Os09t0436300-01
Chr09	irgsp1_rep	five_prime_UTR	16045138	16045149	.	-	.	Parent=Os09t0436300-01
Chr09	irgsp1_rep	CDS	16045107	16045137	.	-	0	Parent=Os09t0436300-01
Chr09	irgsp1_rep	CDS	16044734	16044943	.	-	2	Parent=Os09t0436300-01
Chr09	irgsp1_rep	CDS	16044503	16044636	.	-	2	Parent=Os09t0436300-01
Chr09	irgsp1_rep	CDS	16044136	16044417	.	-	0	Parent=Os09t0436300-01
Chr09	irgsp1_rep	CDS	16043361	16043491	.	-	0	Parent=Os09t0436300-01
Chr09	irgsp1_rep	CDS	16041935	16042061	.	-	1	Parent=Os09t0436300-01
Chr09	irgsp1_rep	CDS	16040352	16040444	.	-	0	Parent=Os09t0436300-01
Chr09	irgsp1_rep	CDS	16039705	16039770	.	-	0	Parent=Os09t0436300-01
Chr09	irgsp1_rep	CDS	16039535	16039629	.	-	0	Parent=Os09t0436300-01
Chr09	irgsp1_rep	CDS	16039449	16039464	.	-	1	Parent=Os09t0436300-01
Chr09	irgsp1_rep	three_prime_UTR	16039122	16039448	.	-	.	Parent=Os09t0436300-01
Chr09	irgsp1_rep	mRNA	16049213	16059278	.	+	.	ID=Os09t0436400-01;Name=Os09t0436400-01;Locus_id=Os09g0436400;Note=PDZ/DHR/GLGF domain containing protein.;Transcript_evidence=AK102877 (DDBJ%2C Best hit);ORF_evidence=NP_001063258.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein binding (GO:0005515);InterPro=PDZ/DHR/GLGF (IPR001478),Peptidase cysteine/serine%2C trypsin-like (IPR009003);NIAS_FLcDNA=J033112E21;TENOR=Os09t0436400-01;KEGG=Os09t0436400-01
Chr09	irgsp1_rep	five_prime_UTR	16049213	16049499	.	+	.	Parent=Os09t0436400-01
Chr09	irgsp1_rep	five_prime_UTR	16050630	16050638	.	+	.	Parent=Os09t0436400-01
Chr09	irgsp1_rep	CDS	16050639	16050726	.	+	0	Parent=Os09t0436400-01
Chr09	irgsp1_rep	CDS	16050816	16050836	.	+	2	Parent=Os09t0436400-01
Chr09	irgsp1_rep	CDS	16050925	16050989	.	+	2	Parent=Os09t0436400-01
Chr09	irgsp1_rep	CDS	16051092	16051224	.	+	0	Parent=Os09t0436400-01
Chr09	irgsp1_rep	CDS	16051358	16051485	.	+	2	Parent=Os09t0436400-01
Chr09	irgsp1_rep	CDS	16051570	16051854	.	+	0	Parent=Os09t0436400-01
Chr09	irgsp1_rep	CDS	16052042	16052172	.	+	0	Parent=Os09t0436400-01
Chr09	irgsp1_rep	CDS	16054351	16054468	.	+	1	Parent=Os09t0436400-01
Chr09	irgsp1_rep	CDS	16057418	16057510	.	+	0	Parent=Os09t0436400-01
Chr09	irgsp1_rep	CDS	16058276	16058341	.	+	0	Parent=Os09t0436400-01
Chr09	irgsp1_rep	CDS	16058436	16058518	.	+	0	Parent=Os09t0436400-01
Chr09	irgsp1_rep	CDS	16058593	16058705	.	+	1	Parent=Os09t0436400-01
Chr09	irgsp1_rep	CDS	16058957	16059003	.	+	2	Parent=Os09t0436400-01
Chr09	irgsp1_rep	three_prime_UTR	16059004	16059278	.	+	.	Parent=Os09t0436400-01
Chr09	irgsp1_rep	mRNA	16050924	16058518	.	-	.	ID=Os09t0436450-00;Name=Os09t0436450-00;Locus_id=Os09g0436450;Note=Non-protein coding transcript.;Transcript_evidence=tplb0029d11 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os09t0436450-00
Chr09	irgsp1_rep	exon	16058386	16058518	.	-	.	Parent=Os09t0436450-00
Chr09	irgsp1_rep	exon	16057395	16057527	.	-	.	Parent=Os09t0436450-00
Chr09	irgsp1_rep	exon	16054350	16054437	.	-	.	Parent=Os09t0436450-00
Chr09	irgsp1_rep	exon	16052021	16052171	.	-	.	Parent=Os09t0436450-00
Chr09	irgsp1_rep	exon	16051564	16051832	.	-	.	Parent=Os09t0436450-00
Chr09	irgsp1_rep	exon	16051370	16051479	.	-	.	Parent=Os09t0436450-00
Chr09	irgsp1_rep	exon	16051090	16051235	.	-	.	Parent=Os09t0436450-00
Chr09	irgsp1_rep	exon	16050924	16050987	.	-	.	Parent=Os09t0436450-00
Chr09	irgsp1_rep	mRNA	16059326	16073999	.	+	.	ID=Os09t0436500-01;Name=Os09t0436500-01;Locus_id=Os09g0436500;Note=Conserved hypothetical protein.;Transcript_evidence=AK100611 (DDBJ%2C Best hit);ORF_evidence=B9G3S9 (UniProt);NIAS_FLcDNA=J023107L23;TENOR=Os09t0436500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	16059326	16059803	.	+	.	Parent=Os09t0436500-01
Chr09	irgsp1_rep	CDS	16059804	16060061	.	+	0	Parent=Os09t0436500-01
Chr09	irgsp1_rep	CDS	16060220	16060294	.	+	0	Parent=Os09t0436500-01
Chr09	irgsp1_rep	CDS	16063655	16063795	.	+	0	Parent=Os09t0436500-01
Chr09	irgsp1_rep	three_prime_UTR	16063796	16063996	.	+	.	Parent=Os09t0436500-01
Chr09	irgsp1_rep	three_prime_UTR	16064256	16064318	.	+	.	Parent=Os09t0436500-01
Chr09	irgsp1_rep	three_prime_UTR	16064935	16065109	.	+	.	Parent=Os09t0436500-01
Chr09	irgsp1_rep	three_prime_UTR	16065205	16065269	.	+	.	Parent=Os09t0436500-01
Chr09	irgsp1_rep	three_prime_UTR	16065722	16065837	.	+	.	Parent=Os09t0436500-01
Chr09	irgsp1_rep	three_prime_UTR	16068901	16068972	.	+	.	Parent=Os09t0436500-01
Chr09	irgsp1_rep	three_prime_UTR	16069047	16069118	.	+	.	Parent=Os09t0436500-01
Chr09	irgsp1_rep	three_prime_UTR	16069212	16069290	.	+	.	Parent=Os09t0436500-01
Chr09	irgsp1_rep	three_prime_UTR	16070555	16070656	.	+	.	Parent=Os09t0436500-01
Chr09	irgsp1_rep	three_prime_UTR	16070783	16070876	.	+	.	Parent=Os09t0436500-01
Chr09	irgsp1_rep	three_prime_UTR	16070984	16071054	.	+	.	Parent=Os09t0436500-01
Chr09	irgsp1_rep	three_prime_UTR	16071335	16071435	.	+	.	Parent=Os09t0436500-01
Chr09	irgsp1_rep	three_prime_UTR	16072025	16072071	.	+	.	Parent=Os09t0436500-01
Chr09	irgsp1_rep	three_prime_UTR	16072146	16072403	.	+	.	Parent=Os09t0436500-01
Chr09	irgsp1_rep	three_prime_UTR	16072626	16072771	.	+	.	Parent=Os09t0436500-01
Chr09	irgsp1_rep	three_prime_UTR	16072908	16073023	.	+	.	Parent=Os09t0436500-01
Chr09	irgsp1_rep	three_prime_UTR	16073650	16073999	.	+	.	Parent=Os09t0436500-01
Chr09	irgsp1_rep	mRNA	16059362	16063841	.	+	.	ID=Os09t0436500-02;Name=Os09t0436500-02;Locus_id=Os09g0436500;Note=Similar to predicted protein.;Transcript_evidence=AK069129 (DDBJ%2C Best hit);ORF_evidence=Q69LL0 (UniProt);NIAS_FLcDNA=J023007E02;Expression=AK069129;TENOR=Os09t0436500-02;KEGG=Os09t0436500-02
Chr09	irgsp1_rep	five_prime_UTR	16059362	16059803	.	+	.	Parent=Os09t0436500-02
Chr09	irgsp1_rep	CDS	16059804	16060061	.	+	0	Parent=Os09t0436500-02
Chr09	irgsp1_rep	CDS	16060220	16060294	.	+	0	Parent=Os09t0436500-02
Chr09	irgsp1_rep	CDS	16060735	16060811	.	+	0	Parent=Os09t0436500-02
Chr09	irgsp1_rep	CDS	16061077	16061165	.	+	1	Parent=Os09t0436500-02
Chr09	irgsp1_rep	CDS	16062015	16062112	.	+	2	Parent=Os09t0436500-02
Chr09	irgsp1_rep	three_prime_UTR	16062113	16062153	.	+	.	Parent=Os09t0436500-02
Chr09	irgsp1_rep	three_prime_UTR	16063655	16063841	.	+	.	Parent=Os09t0436500-02
Chr09	irgsp1_rep	mRNA	16067072	16069088	.	+	.	ID=Os09t0436500-03;Name=Os09t0436500-03;Locus_id=Os09g0436500;Note=Similar to leucine-rich repeat protein kinase.;Transcript_evidence=AK107460 (DDBJ%2C Best hit);ORF_evidence=XP_002309462.1 (RefSeq);NIAS_FLcDNA=002-129-A04;TENOR=Os09t0436500-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	16067072	16068507	.	+	.	Parent=Os09t0436500-03
Chr09	irgsp1_rep	five_prime_UTR	16068584	16068757	.	+	.	Parent=Os09t0436500-03
Chr09	irgsp1_rep	CDS	16068758	16068816	.	+	0	Parent=Os09t0436500-03
Chr09	irgsp1_rep	CDS	16068901	16068976	.	+	1	Parent=Os09t0436500-03
Chr09	irgsp1_rep	three_prime_UTR	16068977	16069088	.	+	.	Parent=Os09t0436500-03
Chr09	irgsp1_rep	mRNA	16074879	16078432	.	+	.	ID=Os09t0436600-01;Name=Os09t0436600-01;Locus_id=Os09g0436600;Note=Conserved hypothetical protein.;Transcript_evidence=AK100962 (DDBJ%2C Best hit);ORF_evidence=B9G3T1 (UniProt);NIAS_FLcDNA=J023141M07;TENOR=Os09t0436600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	16074879	16076191	.	+	.	Parent=Os09t0436600-01
Chr09	irgsp1_rep	CDS	16076192	16076407	.	+	0	Parent=Os09t0436600-01
Chr09	irgsp1_rep	three_prime_UTR	16076408	16077943	.	+	.	Parent=Os09t0436600-01
Chr09	irgsp1_rep	three_prime_UTR	16078028	16078432	.	+	.	Parent=Os09t0436600-01
Chr09	irgsp1_rep	mRNA	16074907	16078403	.	+	.	ID=Os09t0436600-02;Name=Os09t0436600-02;Locus_id=Os09g0436600;Note=Conserved hypothetical protein.;Transcript_evidence=AK070202 (DDBJ%2C Best hit);ORF_evidence=B9G3T1 (UniProt);NIAS_FLcDNA=J023042I12;TENOR=Os09t0436600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	16074907	16074999	.	+	.	Parent=Os09t0436600-02
Chr09	irgsp1_rep	CDS	16075000	16075069	.	+	0	Parent=Os09t0436600-02
Chr09	irgsp1_rep	CDS	16076220	16076351	.	+	2	Parent=Os09t0436600-02
Chr09	irgsp1_rep	CDS	16076613	16076632	.	+	2	Parent=Os09t0436600-02
Chr09	irgsp1_rep	three_prime_UTR	16076633	16076682	.	+	.	Parent=Os09t0436600-02
Chr09	irgsp1_rep	three_prime_UTR	16076995	16077425	.	+	.	Parent=Os09t0436600-02
Chr09	irgsp1_rep	three_prime_UTR	16077503	16077761	.	+	.	Parent=Os09t0436600-02
Chr09	irgsp1_rep	three_prime_UTR	16077843	16077943	.	+	.	Parent=Os09t0436600-02
Chr09	irgsp1_rep	three_prime_UTR	16078028	16078403	.	+	.	Parent=Os09t0436600-02
Chr09	irgsp1_rep	mRNA	16078813	16084120	.	-	.	ID=Os09t0436700-01;Name=Os09t0436700-01;Locus_id=Os09g0436700;Note=PDZ/DHR/GLGF domain containing protein.;Transcript_evidence=AK070597 (DDBJ%2C Best hit);ORF_evidence=A2Z1L6 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein binding (GO:0005515);InterPro=PDZ/DHR/GLGF (IPR001478),Peptidase cysteine/serine%2C trypsin-like (IPR009003);NIAS_FLcDNA=J023058C13;Expression=AK070597;TENOR=Os09t0436700-01;KEGG=Os09t0436700-01
Chr09	irgsp1_rep	five_prime_UTR	16084047	16084120	.	-	.	Parent=Os09t0436700-01
Chr09	irgsp1_rep	CDS	16083250	16083553	.	-	0	Parent=Os09t0436700-01
Chr09	irgsp1_rep	CDS	16083103	16083138	.	-	2	Parent=Os09t0436700-01
Chr09	irgsp1_rep	CDS	16082860	16082985	.	-	2	Parent=Os09t0436700-01
Chr09	irgsp1_rep	CDS	16082651	16082775	.	-	2	Parent=Os09t0436700-01
Chr09	irgsp1_rep	CDS	16082270	16082560	.	-	0	Parent=Os09t0436700-01
Chr09	irgsp1_rep	CDS	16081503	16081633	.	-	0	Parent=Os09t0436700-01
Chr09	irgsp1_rep	CDS	16080763	16080880	.	-	1	Parent=Os09t0436700-01
Chr09	irgsp1_rep	CDS	16080000	16080086	.	-	0	Parent=Os09t0436700-01
Chr09	irgsp1_rep	CDS	16079456	16079545	.	-	0	Parent=Os09t0436700-01
Chr09	irgsp1_rep	CDS	16079286	16079371	.	-	0	Parent=Os09t0436700-01
Chr09	irgsp1_rep	CDS	16079105	16079180	.	-	1	Parent=Os09t0436700-01
Chr09	irgsp1_rep	three_prime_UTR	16078813	16079104	.	-	.	Parent=Os09t0436700-01
Chr09	irgsp1_rep	mRNA	16093498	16096483	.	+	.	ID=Os09t0436800-01;Name=Os09t0436800-01;Locus_id=Os09g0436800;Note=CAAX amino terminal protease domain containing protein.;Transcript_evidence=AK058729 (DDBJ%2C Best hit);ORF_evidence=B9G3T2 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=CAAX amino terminal protease (IPR003675);NIAS_FLcDNA=001-019-F08;TENOR=Os09t0436800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	16093498	16093592	.	+	0	Parent=Os09t0436800-01
Chr09	irgsp1_rep	CDS	16094728	16094962	.	+	1	Parent=Os09t0436800-01
Chr09	irgsp1_rep	CDS	16095067	16095374	.	+	0	Parent=Os09t0436800-01
Chr09	irgsp1_rep	CDS	16095930	16096224	.	+	1	Parent=Os09t0436800-01
Chr09	irgsp1_rep	three_prime_UTR	16096225	16096483	.	+	.	Parent=Os09t0436800-01
Chr09	irgsp1_rep	mRNA	16097468	16102024	.	-	.	ID=Os09t0436850-00;Name=Os09t0436850-00;Locus_id=Os09g0436850;Note=Hypothetical protein.;Transcript_evidence=tplb0059p06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0436850-00
Chr09	irgsp1_rep	five_prime_UTR	16101724	16102024	.	-	.	Parent=Os09t0436850-00
Chr09	irgsp1_rep	five_prime_UTR	16100730	16100931	.	-	.	Parent=Os09t0436850-00
Chr09	irgsp1_rep	five_prime_UTR	16100284	16100406	.	-	.	Parent=Os09t0436850-00
Chr09	irgsp1_rep	five_prime_UTR	16100119	16100197	.	-	.	Parent=Os09t0436850-00
Chr09	irgsp1_rep	five_prime_UTR	16099901	16100020	.	-	.	Parent=Os09t0436850-00
Chr09	irgsp1_rep	five_prime_UTR	16099713	16099812	.	-	.	Parent=Os09t0436850-00
Chr09	irgsp1_rep	five_prime_UTR	16098455	16098499	.	-	.	Parent=Os09t0436850-00
Chr09	irgsp1_rep	five_prime_UTR	16098285	16098336	.	-	.	Parent=Os09t0436850-00
Chr09	irgsp1_rep	five_prime_UTR	16097944	16098147	.	-	.	Parent=Os09t0436850-00
Chr09	irgsp1_rep	five_prime_UTR	16097832	16097863	.	-	.	Parent=Os09t0436850-00
Chr09	irgsp1_rep	CDS	16097468	16097831	.	-	0	Parent=Os09t0436850-00
Chr09	irgsp1_rep	mRNA	16097484	16102267	.	+	.	ID=Os09t0436900-01;Name=Os09t0436900-01;Locus_id=Os09g0436900;Note=Protein of unknown function DUF1350 domain containing protein.;Transcript_evidence=AK119610 (DDBJ%2C Best hit);ORF_evidence=B8BFE5 (UniProt);InterPro=Protein of unknown function DUF1350 (IPR010765);NIAS_FLcDNA=002-117-F11;TENOR=Os09t0436900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	16097484	16097520	.	+	.	Parent=Os09t0436900-01
Chr09	irgsp1_rep	CDS	16097521	16097858	.	+	0	Parent=Os09t0436900-01
Chr09	irgsp1_rep	CDS	16097939	16098142	.	+	1	Parent=Os09t0436900-01
Chr09	irgsp1_rep	CDS	16098281	16098338	.	+	1	Parent=Os09t0436900-01
Chr09	irgsp1_rep	CDS	16098486	16098515	.	+	0	Parent=Os09t0436900-01
Chr09	irgsp1_rep	three_prime_UTR	16098516	16098519	.	+	.	Parent=Os09t0436900-01
Chr09	irgsp1_rep	three_prime_UTR	16099737	16099812	.	+	.	Parent=Os09t0436900-01
Chr09	irgsp1_rep	three_prime_UTR	16099902	16100017	.	+	.	Parent=Os09t0436900-01
Chr09	irgsp1_rep	three_prime_UTR	16100114	16100203	.	+	.	Parent=Os09t0436900-01
Chr09	irgsp1_rep	three_prime_UTR	16100289	16100420	.	+	.	Parent=Os09t0436900-01
Chr09	irgsp1_rep	three_prime_UTR	16100746	16100924	.	+	.	Parent=Os09t0436900-01
Chr09	irgsp1_rep	three_prime_UTR	16101726	16102267	.	+	.	Parent=Os09t0436900-01
Chr09	irgsp1_rep	mRNA	16124979	16125909	.	+	.	ID=Os09t0437100-00;Name=Os09t0437100-00;Locus_id=Os09g0437100;CGSNL Gene Symbol=SAUR37;CGSNL Gene Name=SMALL AUXIN-UP RNA 37;Oryzabase Gene Symbol Synonym(s)=OsSAUR37;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 37;Note=Similar to SAUR33-auxin-responsive SAUR family member.;Transcript_evidence=AK363815 (DDBJ);ORF_evidence=B6T035 (UniProt);Oryzabase=9162;TENOR=Os09t0437100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	16124979	16124981	.	+	.	Parent=Os09t0437100-00
Chr09	irgsp1_rep	CDS	16124982	16125082	.	+	0	Parent=Os09t0437100-00
Chr09	irgsp1_rep	CDS	16125169	16125577	.	+	1	Parent=Os09t0437100-00
Chr09	irgsp1_rep	three_prime_UTR	16125578	16125909	.	+	.	Parent=Os09t0437100-00
Chr09	irgsp1_rep	mRNA	16143938	16144535	.	-	.	ID=Os09t0437400-00;Name=Os09t0437400-00;Locus_id=Os09g0437400;CGSNL Gene Symbol=SAUR38;CGSNL Gene Name=SMALL AUXIN-UP RNA 38;Oryzabase Gene Symbol Synonym(s)=OsSAUR38;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 38;Note=Similar to SAUR family protein.;Transcript_evidence=EU959260 (DDBJ);ORF_evidence=XP_002326143.1 (RefSeq);InterPro=Auxin responsive SAUR protein (IPR003676);Oryzabase=9163;TENOR=Os09t0437400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	16143963	16144535	.	-	0	Parent=Os09t0437400-00
Chr09	irgsp1_rep	three_prime_UTR	16143938	16143962	.	-	.	Parent=Os09t0437400-00
Chr09	irgsp1_rep	mRNA	16153181	16155032	.	+	.	ID=Os09t0437500-01;Name=Os09t0437500-01;Locus_id=Os09g0437500;Note=Dormancyauxin associated family protein.;Transcript_evidence=AK099618 (DDBJ%2C Best hit),AK065169 (DDBJ%2C Best hit);ORF_evidence=NP_001150581.1 (RefSeq);InterPro=Dormancyauxin associated (IPR008406);NIAS_FLcDNA=J013052O10,J013002C17;TENOR=Os09t0437500-01
Chr09	irgsp1_rep	five_prime_UTR	16153181	16153242	.	+	.	Parent=Os09t0437500-01
Chr09	irgsp1_rep	five_prime_UTR	16153454	16153498	.	+	.	Parent=Os09t0437500-01
Chr09	irgsp1_rep	CDS	16153499	16153793	.	+	0	Parent=Os09t0437500-01
Chr09	irgsp1_rep	CDS	16153909	16154026	.	+	2	Parent=Os09t0437500-01
Chr09	irgsp1_rep	CDS	16154377	16154404	.	+	1	Parent=Os09t0437500-01
Chr09	irgsp1_rep	three_prime_UTR	16154405	16155032	.	+	.	Parent=Os09t0437500-01
Chr09	irgsp1_rep	mRNA	16171155	16175737	.	+	.	ID=Os09t0437900-01;Name=Os09t0437900-01;Locus_id=Os09g0437900;CGSNL Gene Symbol=ISC19;CGSNL Gene Name=IRON-SULFUR CLUSTER PROTEIN 19;Oryzabase Gene Symbol Synonym(s)=OsISC19;Oryzabase Gene Name Synonym(s)=Iron-sulfur cluster protein 19;Note=Similar to Adrenodoxin.;Transcript_evidence=AK107833 (DDBJ%2C Best hit);ORF_evidence=B6U5I8 (UniProt);GO=Molecular Function: electron carrier activity (GO:0009055),Molecular Function: iron-sulfur cluster binding (GO:0051536),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=Ferredoxin (IPR001041),Adrenodoxin (IPR001055),Beta-grasp fold%2C ferredoxin-type (IPR012675),Adrenodoxin%2C iron-sulphur binding site (IPR018298);NIAS_FLcDNA=002-133-H02;Oryzabase=13431;Expression=AK107833;TENOR=Os09t0437900-01;KEGG=Os09t0437900-01
Chr09	irgsp1_rep	five_prime_UTR	16171155	16171264	.	+	.	Parent=Os09t0437900-01
Chr09	irgsp1_rep	CDS	16171265	16171322	.	+	0	Parent=Os09t0437900-01
Chr09	irgsp1_rep	CDS	16171845	16171909	.	+	2	Parent=Os09t0437900-01
Chr09	irgsp1_rep	CDS	16172247	16172314	.	+	0	Parent=Os09t0437900-01
Chr09	irgsp1_rep	CDS	16174683	16174789	.	+	1	Parent=Os09t0437900-01
Chr09	irgsp1_rep	CDS	16175080	16175129	.	+	2	Parent=Os09t0437900-01
Chr09	irgsp1_rep	CDS	16175203	16175285	.	+	0	Parent=Os09t0437900-01
Chr09	irgsp1_rep	CDS	16175359	16175473	.	+	1	Parent=Os09t0437900-01
Chr09	irgsp1_rep	three_prime_UTR	16175474	16175737	.	+	.	Parent=Os09t0437900-01
Chr09	irgsp1_rep	mRNA	16181836	16182703	.	+	.	ID=Os09t0437951-00;Name=Os09t0437951-00;Locus_id=Os09g0437951;Note=Non-protein coding transcript.;Transcript_evidence=CT835892 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os09t0437951-00
Chr09	irgsp1_rep	exon	16181836	16182703	.	+	.	Parent=Os09t0437951-00
Chr09	irgsp1_rep	mRNA	16186282	16197135	.	+	.	ID=Os09t0438000-01;Name=Os09t0438000-01;Locus_id=Os09g0438000;CGSNL Gene Symbol=RBOHG;CGSNL Gene Name=RESPIRATORY BURST OXIDASE HOMOLOG G;Oryzabase Gene Symbol Synonym(s)=rbohG%2C OsrbohG%2C Os rbohG%2C OsRbohG%2C OsNox7%2C Nox7%2C OsrbohB%2C OsRboh7%2C Rboh7;Oryzabase Gene Name Synonym(s)=Respiratory Burst Oxidase Homolog G%2C NADPH oxidase 7;Note=Similar to RbohAOsp (Fragment).;Transcript_evidence=AK120739 (DDBJ%2C Best hit);ORF_evidence=B2D0N7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: iron ion binding (GO:0005506),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: oxidoreductase activity%2C acting on NADH or NADPH%2C oxygen as acceptor (GO:0050664);InterPro=CytoChrome b245%2C heavy chain (IPR000778),EF-hand-like domain (IPR011992),FAD-binding 8 (IPR013112),Ferric reductase%2C NAD binding (IPR013121),Flavoprotein transmembrane component (IPR013130),NADPH oxidase Respiratory burst (IPR013623),Ferredoxin reductase-type FAD-binding domain (IPR017927),Riboflavin synthase-like beta-barrel (IPR017938),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J023003N01;Oryzabase=10488;Expression=AK120739;TENOR=Os09t0438000-01;KEGG=Os09t0438000-01
Chr09	irgsp1_rep	five_prime_UTR	16186282	16186429	.	+	.	Parent=Os09t0438000-01
Chr09	irgsp1_rep	CDS	16186430	16187126	.	+	0	Parent=Os09t0438000-01
Chr09	irgsp1_rep	CDS	16187260	16187419	.	+	2	Parent=Os09t0438000-01
Chr09	irgsp1_rep	CDS	16187595	16187643	.	+	1	Parent=Os09t0438000-01
Chr09	irgsp1_rep	CDS	16187809	16187922	.	+	0	Parent=Os09t0438000-01
Chr09	irgsp1_rep	CDS	16188085	16188609	.	+	0	Parent=Os09t0438000-01
Chr09	irgsp1_rep	CDS	16190189	16190620	.	+	0	Parent=Os09t0438000-01
Chr09	irgsp1_rep	CDS	16194181	16194276	.	+	0	Parent=Os09t0438000-01
Chr09	irgsp1_rep	CDS	16195261	16195376	.	+	0	Parent=Os09t0438000-01
Chr09	irgsp1_rep	CDS	16195473	16195643	.	+	1	Parent=Os09t0438000-01
Chr09	irgsp1_rep	CDS	16195731	16195890	.	+	1	Parent=Os09t0438000-01
Chr09	irgsp1_rep	CDS	16195979	16196164	.	+	0	Parent=Os09t0438000-01
Chr09	irgsp1_rep	CDS	16196275	16196403	.	+	0	Parent=Os09t0438000-01
Chr09	irgsp1_rep	CDS	16196488	16196566	.	+	0	Parent=Os09t0438000-01
Chr09	irgsp1_rep	CDS	16196685	16196794	.	+	2	Parent=Os09t0438000-01
Chr09	irgsp1_rep	three_prime_UTR	16196795	16197135	.	+	.	Parent=Os09t0438000-01
Chr09	irgsp1_rep	mRNA	16186775	16191502	.	+	.	ID=Os09t0438000-02;Name=Os09t0438000-02;Locus_id=Os09g0438000;CGSNL Gene Symbol=RBOHG;CGSNL Gene Name=RESPIRATORY BURST OXIDASE HOMOLOG G;Oryzabase Gene Symbol Synonym(s)=rbohG%2C OsrbohG%2C Os rbohG%2C OsRbohG%2C OsNox7%2C Nox7%2C OsrbohB%2C OsRboh7%2C Rboh7;Oryzabase Gene Name Synonym(s)=Respiratory Burst Oxidase Homolog G%2C NADPH oxidase 7;Note=Similar to Respiratory burst oxidase-like protein E.;Transcript_evidence=AK109935 (DDBJ%2C Best hit);ORF_evidence=B2D0N7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: integral to membrane (GO:0016021),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: iron ion binding (GO:0005506),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: oxidoreductase activity%2C acting on NADH or NADPH%2C oxygen as acceptor (GO:0050664);InterPro=EF-hand-like domain (IPR011992),Flavoprotein transmembrane component (IPR013130),NADPH oxidase Respiratory burst (IPR013623),EF-HAND 2 (IPR018249);NIAS_FLcDNA=002-153-A07;Oryzabase=10488;TENOR=Os09t0438000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	16186775	16186921	.	+	.	Parent=Os09t0438000-02
Chr09	irgsp1_rep	CDS	16186922	16187126	.	+	0	Parent=Os09t0438000-02
Chr09	irgsp1_rep	CDS	16187260	16187419	.	+	2	Parent=Os09t0438000-02
Chr09	irgsp1_rep	CDS	16187595	16187643	.	+	1	Parent=Os09t0438000-02
Chr09	irgsp1_rep	CDS	16187809	16187922	.	+	0	Parent=Os09t0438000-02
Chr09	irgsp1_rep	CDS	16188085	16188609	.	+	0	Parent=Os09t0438000-02
Chr09	irgsp1_rep	CDS	16190189	16190620	.	+	0	Parent=Os09t0438000-02
Chr09	irgsp1_rep	CDS	16191082	16191276	.	+	0	Parent=Os09t0438000-02
Chr09	irgsp1_rep	three_prime_UTR	16191277	16191502	.	+	.	Parent=Os09t0438000-02
Chr09	irgsp1_rep	mRNA	16186630	16187435	.	-	.	ID=Os09t0438050-00;Name=Os09t0438050-00;Locus_id=Os09g0438050;Note=Hypothetical protein.;Transcript_evidence=EU950506 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0438050-00
Chr09	irgsp1_rep	five_prime_UTR	16187194	16187435	.	-	.	Parent=Os09t0438050-00
Chr09	irgsp1_rep	CDS	16186720	16187193	.	-	0	Parent=Os09t0438050-00
Chr09	irgsp1_rep	three_prime_UTR	16186630	16186719	.	-	.	Parent=Os09t0438050-00
Chr09	irgsp1_rep	mRNA	16200946	16201902	.	-	.	ID=Os09t0438100-01;Name=Os09t0438100-01;Locus_id=Os09g0438100;Note=Conserved hypothetical protein.;Transcript_evidence=AK063180 (DDBJ%2C Best hit);ORF_evidence=B8BCE5 (UniProt);NIAS_FLcDNA=001-112-A10;Expression=AK063180;TENOR=Os09t0438100-01;KEGG=Os09t0438100-01
Chr09	irgsp1_rep	five_prime_UTR	16201812	16201902	.	-	.	Parent=Os09t0438100-01
Chr09	irgsp1_rep	CDS	16201116	16201811	.	-	0	Parent=Os09t0438100-01
Chr09	irgsp1_rep	three_prime_UTR	16200946	16201115	.	-	.	Parent=Os09t0438100-01
Chr09	irgsp1_rep	mRNA	16225081	16229238	.	+	.	ID=Os09t0438400-00;Name=Os09t0438400-00;Locus_id=Os09g0438400;Note=Similar to Choline/ethanolamine kinase.;Transcript_evidence=AK364483 (DDBJ);ORF_evidence=B6TL87 (UniProt);GO=Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Choline/ethanolamine kinase (IPR002573),Protein kinase-like domain (IPR011009);TENOR=Os09t0438400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	16225081	16225339	.	+	0	Parent=Os09t0438400-00
Chr09	irgsp1_rep	CDS	16225587	16225676	.	+	2	Parent=Os09t0438400-00
Chr09	irgsp1_rep	CDS	16226099	16226205	.	+	2	Parent=Os09t0438400-00
Chr09	irgsp1_rep	CDS	16226580	16226685	.	+	0	Parent=Os09t0438400-00
Chr09	irgsp1_rep	CDS	16226944	16227066	.	+	2	Parent=Os09t0438400-00
Chr09	irgsp1_rep	CDS	16227390	16227481	.	+	2	Parent=Os09t0438400-00
Chr09	irgsp1_rep	CDS	16227720	16227805	.	+	0	Parent=Os09t0438400-00
Chr09	irgsp1_rep	CDS	16227923	16228027	.	+	1	Parent=Os09t0438400-00
Chr09	irgsp1_rep	CDS	16228109	16228175	.	+	1	Parent=Os09t0438400-00
Chr09	irgsp1_rep	CDS	16228667	16228759	.	+	0	Parent=Os09t0438400-00
Chr09	irgsp1_rep	CDS	16228898	16229026	.	+	0	Parent=Os09t0438400-00
Chr09	irgsp1_rep	three_prime_UTR	16229027	16229238	.	+	.	Parent=Os09t0438400-00
Chr09	irgsp1_rep	mRNA	16229833	16231065	.	-	.	ID=Os09t0438500-00;Name=Os09t0438500-00;Locus_id=Os09g0438500;Note=Hypothetical conserved gene.;Transcript_evidence=BT034163 (DDBJ);ORF_evidence=B8BCE7 (UniProt);TENOR=Os09t0438500-00;KEGG=Os09t0438500-00
Chr09	irgsp1_rep	CDS	16229998	16231065	.	-	0	Parent=Os09t0438500-00
Chr09	irgsp1_rep	three_prime_UTR	16229833	16229997	.	-	.	Parent=Os09t0438500-00
Chr09	irgsp1_rep	mRNA	16236686	16240793	.	-	.	ID=Os09t0438700-01;Name=Os09t0438700-01;Locus_id=Os09g0438700;Note=Similar to 20 kDa chaperonin%2C chloroplast precursor (Protein Cpn21) (Chloroplast protein Cpn10) (Chloroplast chaperonin 10) (Ch-CPN10) (Chaperonin 20).;Transcript_evidence=AK061837 (DDBJ%2C Best hit),AK098903 (DDBJ%2C Best hit);ORF_evidence=B6T8U7 (UniProt);GO=Biological Process: protein folding (GO:0006457),Cellular Component: cytoplasm (GO:0005737),Molecular Function: ATP binding (GO:0005524);InterPro=GroES-like (IPR011032),Chaperonin 21%2C chloroplast (IPR017416),Chaperonin Cpn10%2C conserved site (IPR018369),Chaperonin Cpn10 (IPR020818);NIAS_FLcDNA=001-040-D10,J013002C22;Expression=AK061837;TENOR=Os09t0438700-01;KEGG=Os09t0438700-01
Chr09	irgsp1_rep	five_prime_UTR	16240679	16240793	.	-	.	Parent=Os09t0438700-01
Chr09	irgsp1_rep	CDS	16240526	16240678	.	-	0	Parent=Os09t0438700-01
Chr09	irgsp1_rep	CDS	16239564	16239743	.	-	0	Parent=Os09t0438700-01
Chr09	irgsp1_rep	CDS	16239082	16239237	.	-	0	Parent=Os09t0438700-01
Chr09	irgsp1_rep	CDS	16237836	16237913	.	-	0	Parent=Os09t0438700-01
Chr09	irgsp1_rep	CDS	16236841	16237011	.	-	0	Parent=Os09t0438700-01
Chr09	irgsp1_rep	three_prime_UTR	16236686	16236840	.	-	.	Parent=Os09t0438700-01
Chr09	irgsp1_rep	mRNA	16252173	16257558	.	-	.	ID=Os09t0439000-00;Name=Os09t0439000-00;Locus_id=Os09g0439000;Note=Similar to predicted protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3BZ80 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Sterile alpha motif domain (IPR001660),DNA repair metallo-beta-lactamase (IPR011084),Sterile alpha motif/pointed domain (IPR013761),Sterile alpha motif%2C type 1 (IPR021129);TENOR=Os09t0439000-00;KEGG=Os09t0439000-00
Chr09	irgsp1_rep	CDS	16256137	16257558	.	-	0	Parent=Os09t0439000-00
Chr09	irgsp1_rep	CDS	16255260	16255418	.	-	0	Parent=Os09t0439000-00
Chr09	irgsp1_rep	CDS	16254684	16254986	.	-	0	Parent=Os09t0439000-00
Chr09	irgsp1_rep	CDS	16254514	16254612	.	-	0	Parent=Os09t0439000-00
Chr09	irgsp1_rep	CDS	16253851	16253988	.	-	0	Parent=Os09t0439000-00
Chr09	irgsp1_rep	CDS	16253657	16253770	.	-	0	Parent=Os09t0439000-00
Chr09	irgsp1_rep	CDS	16253446	16253551	.	-	0	Parent=Os09t0439000-00
Chr09	irgsp1_rep	CDS	16253159	16253370	.	-	2	Parent=Os09t0439000-00
Chr09	irgsp1_rep	CDS	16252678	16252781	.	-	0	Parent=Os09t0439000-00
Chr09	irgsp1_rep	CDS	16252173	16252320	.	-	1	Parent=Os09t0439000-00
Chr09	irgsp1_rep	mRNA	16262216	16262997	.	+	.	ID=Os09t0439050-00;Name=Os09t0439050-00;Locus_id=Os09g0439050;Note=Ribosomal protein L18/L5 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G3U2 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L18/L5 (IPR005484);TENOR=Os09t0439050-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	16262216	16262476	.	+	0	Parent=Os09t0439050-00
Chr09	irgsp1_rep	CDS	16262535	16262738	.	+	0	Parent=Os09t0439050-00
Chr09	irgsp1_rep	CDS	16262842	16262997	.	+	0	Parent=Os09t0439050-00
Chr09	irgsp1_rep	mRNA	16263934	16265886	.	+	.	ID=Os09t0439100-01;Name=Os09t0439100-01;Locus_id=Os09g0439100;Note=Similar to ATCSLA09.;Transcript_evidence=AK110960 (DDBJ%2C Best hit);ORF_evidence=XP_002873112.1 (RefSeq);NIAS_FLcDNA=002-174-A11;TENOR=Os09t0439100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	16263934	16263934	.	+	.	Parent=Os09t0439100-01
Chr09	irgsp1_rep	CDS	16263935	16264064	.	+	0	Parent=Os09t0439100-01
Chr09	irgsp1_rep	CDS	16264137	16264282	.	+	2	Parent=Os09t0439100-01
Chr09	irgsp1_rep	three_prime_UTR	16264283	16264284	.	+	.	Parent=Os09t0439100-01
Chr09	irgsp1_rep	three_prime_UTR	16264357	16264467	.	+	.	Parent=Os09t0439100-01
Chr09	irgsp1_rep	three_prime_UTR	16264553	16264754	.	+	.	Parent=Os09t0439100-01
Chr09	irgsp1_rep	three_prime_UTR	16264841	16265038	.	+	.	Parent=Os09t0439100-01
Chr09	irgsp1_rep	three_prime_UTR	16265148	16265187	.	+	.	Parent=Os09t0439100-01
Chr09	irgsp1_rep	three_prime_UTR	16265318	16265886	.	+	.	Parent=Os09t0439100-01
Chr09	irgsp1_rep	mRNA	16264343	16265195	.	-	.	ID=Os09t0439150-00;Name=Os09t0439150-00;Locus_id=Os09g0439150;Note=Hypothetical gene.;Transcript_evidence=EU946219 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0439150-00;KEGG=Os09t0439150-00
Chr09	irgsp1_rep	five_prime_UTR	16264801	16265195	.	-	.	Parent=Os09t0439150-00
Chr09	irgsp1_rep	CDS	16264582	16264800	.	-	0	Parent=Os09t0439150-00
Chr09	irgsp1_rep	three_prime_UTR	16264343	16264581	.	-	.	Parent=Os09t0439150-00
Chr09	irgsp1_rep	mRNA	16273522	16275268	.	-	.	ID=Os09t0439200-01;Name=Os09t0439200-01;Locus_id=Os09g0439200;RAP-DB Gene Symbol Synonym(s)=TIFY10C%2C OsJAZ7%2C OsJAZ 8%2C OsJAZ8%2C Os-JAZ8%2C JAZ8%2C OsTIFY10c%2C OsTIFY10c/OsJAZ8;RAP-DB Gene Name Synonym(s)=TIFY GENE 10C%2C Jasmonate ZIM-domain protein 7%2C Jasmonate ZIM-domain protein 8;CGSNL Gene Symbol=TIFY10C;CGSNL Gene Name=TIFY GENE 10C;Oryzabase Gene Symbol Synonym(s)=OsJAZ7%2C JAZ7%2C OsJAZ 8%2C OsJAZ8%2C Os-JAZ8%2C JAZ8%2C OsTIFY10c%2C OsTIFY10c/OsJAZ8;Oryzabase Gene Name Synonym(s)=Jasmonate ZIM-domain protein 7%2C Jasmonate ZIM-domain protein 8.;Note=Jasmonate ZIM-domain protein%2C Jasmonate-induced resistance to bacterial blight%2C Repressor of jasmonic acid signaling;Transcript_evidence=AK108738;ORF_evidence=Q69P94;InterPro=Tify (IPR010399),CO/COL/TOC1%2C conserved site (IPR018467);NIAS_FLcDNA=002-150-D12;Manual Curation=December 15%2C 2014;Literature_PMID=23104764;Oryzabase=9493;TENOR=Os09t0439200-01;KEGG=Os09t0439200-01
Chr09	irgsp1_rep	five_prime_UTR	16275200	16275268	.	-	.	Parent=Os09t0439200-01
Chr09	irgsp1_rep	CDS	16275019	16275199	.	-	0	Parent=Os09t0439200-01
Chr09	irgsp1_rep	CDS	16274782	16274932	.	-	2	Parent=Os09t0439200-01
Chr09	irgsp1_rep	CDS	16274371	16274561	.	-	1	Parent=Os09t0439200-01
Chr09	irgsp1_rep	CDS	16274167	16274224	.	-	2	Parent=Os09t0439200-01
Chr09	irgsp1_rep	CDS	16273932	16274049	.	-	1	Parent=Os09t0439200-01
Chr09	irgsp1_rep	three_prime_UTR	16273522	16273931	.	-	.	Parent=Os09t0439200-01
Chr09	irgsp1_rep	mRNA	16282843	16287189	.	+	.	ID=Os09t0439400-01;Name=Os09t0439400-01;Locus_id=Os09g0439400;Oryzabase Gene Symbol Synonym(s)=OsPGL25%2C PGL25;Oryzabase Gene Name Synonym(s)=Polygalacturonases-Like 25%2C PG-like 25;Note=Pectin lyase fold/virulence factor domain containing protein.;Transcript_evidence=AK121407 (DDBJ%2C Best hit);ORF_evidence=XP_002877258.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=J023132L13;Oryzabase=22302;Expression=AK121407;TENOR=Os09t0439400-01;KEGG=Os09t0439400-01
Chr09	irgsp1_rep	five_prime_UTR	16282843	16282994	.	+	.	Parent=Os09t0439400-01
Chr09	irgsp1_rep	CDS	16282995	16283525	.	+	0	Parent=Os09t0439400-01
Chr09	irgsp1_rep	CDS	16284140	16284260	.	+	0	Parent=Os09t0439400-01
Chr09	irgsp1_rep	CDS	16285314	16285562	.	+	2	Parent=Os09t0439400-01
Chr09	irgsp1_rep	CDS	16285842	16285995	.	+	2	Parent=Os09t0439400-01
Chr09	irgsp1_rep	CDS	16286370	16286895	.	+	1	Parent=Os09t0439400-01
Chr09	irgsp1_rep	three_prime_UTR	16286896	16287189	.	+	.	Parent=Os09t0439400-01
Chr09	irgsp1_rep	mRNA	16287916	16290736	.	+	.	ID=Os09t0439500-01;Name=Os09t0439500-01;Locus_id=Os09g0439500;Oryzabase Gene Symbol Synonym(s)=Lhca6%2C OsLhca6;Oryzabase Gene Name Synonym(s)=light-harvesting chlorophyll a/b-binding protein a6;Note=Similar to Type II chlorophyll a/b binding protein from photosystem I precursor.;Transcript_evidence=AK067780 (DDBJ%2C Best hit);ORF_evidence=XP_002326295.1 (RefSeq);GO=Biological Process: photosynthesis%2C light harvesting (GO:0009765),Cellular Component: membrane (GO:0016020);InterPro=Chlorophyll A-B binding protein%2C plant (IPR001344),Chlorophyll A-B binding protein (IPR022796),Chlorophyll a/b binding protein domain (IPR023329);NIAS_FLcDNA=J013114F21;Oryzabase=18702;Expression=AK067780;TENOR=Os09t0439500-01;KEGG=Os09t0439500-01
Chr09	irgsp1_rep	five_prime_UTR	16287916	16287980	.	+	.	Parent=Os09t0439500-01
Chr09	irgsp1_rep	CDS	16287981	16288027	.	+	0	Parent=Os09t0439500-01
Chr09	irgsp1_rep	CDS	16288189	16288403	.	+	1	Parent=Os09t0439500-01
Chr09	irgsp1_rep	CDS	16288857	16289371	.	+	2	Parent=Os09t0439500-01
Chr09	irgsp1_rep	CDS	16290661	16290678	.	+	0	Parent=Os09t0439500-01
Chr09	irgsp1_rep	three_prime_UTR	16290679	16290736	.	+	.	Parent=Os09t0439500-01
Chr09	irgsp1_rep	mRNA	16294642	16297060	.	+	.	ID=Os09t0439600-01;Name=Os09t0439600-01;Locus_id=Os09g0439600;CGSNL Gene Symbol=EXO70D1;Oryzabase Gene Symbol Synonym(s)=OsEXO70D1%2C OsExo70D1%2C OrysaD1_Exo70;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein D1;Note=Exo70 exocyst complex subunit family protein.;Transcript_evidence=AK100577 (DDBJ%2C Best hit);ORF_evidence=XP_002891787.1 (RefSeq);GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exo70 exocyst complex subunit (IPR004140),Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=J023105H18;Oryzabase=20328;Expression=AK100577;TENOR=Os09t0439600-01;KEGG=Os09t0439600-01
Chr09	irgsp1_rep	five_prime_UTR	16294642	16294809	.	+	.	Parent=Os09t0439600-01
Chr09	irgsp1_rep	CDS	16294810	16296726	.	+	0	Parent=Os09t0439600-01
Chr09	irgsp1_rep	three_prime_UTR	16296727	16297060	.	+	.	Parent=Os09t0439600-01
Chr09	irgsp1_rep	mRNA	16300932	16304847	.	-	.	ID=Os09t0439700-01;Name=Os09t0439700-01;Locus_id=Os09g0439700;Note=Transmembrane receptor%2C eukaryota domain containing protein.;Transcript_evidence=AK105702 (DDBJ%2C Best hit);ORF_evidence=A2Q492 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Transmembrane receptor%2C eukaryota (IPR009637);NIAS_FLcDNA=001-201-D09;Expression=AK105702;TENOR=Os09t0439700-01;KEGG=Os09t0439700-01
Chr09	irgsp1_rep	five_prime_UTR	16304777	16304847	.	-	.	Parent=Os09t0439700-01
Chr09	irgsp1_rep	CDS	16304511	16304776	.	-	0	Parent=Os09t0439700-01
Chr09	irgsp1_rep	CDS	16302309	16303230	.	-	1	Parent=Os09t0439700-01
Chr09	irgsp1_rep	CDS	16302027	16302122	.	-	0	Parent=Os09t0439700-01
Chr09	irgsp1_rep	CDS	16301698	16301834	.	-	0	Parent=Os09t0439700-01
Chr09	irgsp1_rep	CDS	16301163	16301340	.	-	1	Parent=Os09t0439700-01
Chr09	irgsp1_rep	three_prime_UTR	16300932	16301162	.	-	.	Parent=Os09t0439700-01
Chr09	irgsp1_rep	mRNA	16300797	16304815	.	-	.	ID=Os09t0439700-02;Name=Os09t0439700-02;Locus_id=Os09g0439700;Note=Transmembrane receptor%2C eukaryota domain containing protein.;Transcript_evidence=AK120805 (DDBJ%2C Best hit);ORF_evidence=A2Q492 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Transmembrane receptor%2C eukaryota (IPR009637);NIAS_FLcDNA=J023013H12;Expression=AK120805;TENOR=Os09t0439700-02;KEGG=Os09t0439700-02
Chr09	irgsp1_rep	five_prime_UTR	16304777	16304815	.	-	.	Parent=Os09t0439700-02
Chr09	irgsp1_rep	CDS	16304511	16304776	.	-	0	Parent=Os09t0439700-02
Chr09	irgsp1_rep	CDS	16302309	16303230	.	-	1	Parent=Os09t0439700-02
Chr09	irgsp1_rep	CDS	16302027	16302122	.	-	0	Parent=Os09t0439700-02
Chr09	irgsp1_rep	CDS	16301698	16301834	.	-	0	Parent=Os09t0439700-02
Chr09	irgsp1_rep	CDS	16301163	16301340	.	-	1	Parent=Os09t0439700-02
Chr09	irgsp1_rep	three_prime_UTR	16300797	16301162	.	-	.	Parent=Os09t0439700-02
Chr09	irgsp1_rep	mRNA	16302791	16304814	.	-	.	ID=Os09t0439700-03;Name=Os09t0439700-03;Locus_id=Os09g0439700;Note=Hypothetical conserved gene.;Transcript_evidence=AK119953 (DDBJ%2C Best hit);ORF_evidence=B9G3U5 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Transmembrane receptor%2C eukaryota (IPR009637);NIAS_FLcDNA=002-184-C07;TENOR=Os09t0439700-03
Chr09	irgsp1_rep	five_prime_UTR	16304777	16304814	.	-	.	Parent=Os09t0439700-03
Chr09	irgsp1_rep	CDS	16304511	16304776	.	-	0	Parent=Os09t0439700-03
Chr09	irgsp1_rep	CDS	16302791	16303230	.	-	1	Parent=Os09t0439700-03
Chr09	irgsp1_rep	mRNA	16307780	16310837	.	-	.	ID=Os09t0439800-01;Name=Os09t0439800-01;Locus_id=Os09g0439800;RAP-DB Gene Symbol Synonym(s)=DRO1%2C Dro1;RAP-DB Gene Name Synonym(s)=DEEPER ROOTING 1%2C Deeper rooting 1;CGSNL Gene Symbol=DRO1;CGSNL Gene Name=DEEPER ROOTING 1;Oryzabase Gene Symbol Synonym(s)=Dro1%2C OsDRO1%2C OsSPR1%2C SPR1;Oryzabase Gene Name Synonym(s)=Deeper rooting 1%2C Short postembryonic roots 1;Note=Control of root system architecture%2C Drought avoidance;Transcript_evidence=AK068870,AB689741 (Kinandang Patong);ORF_evidence=Q69P88;NIAS_FLcDNA=J023002M06;Manual Curation=July 1%2C 2016;Literature_PMID=23913002;Oryzabase=8892;Expression=AK068870;TENOR=Os09t0439800-01;KEGG=Os09t0439800-01
Chr09	irgsp1_rep	five_prime_UTR	16310575	16310837	.	-	.	Parent=Os09t0439800-01
Chr09	irgsp1_rep	CDS	16310569	16310574	.	-	0	Parent=Os09t0439800-01
Chr09	irgsp1_rep	CDS	16310374	16310452	.	-	0	Parent=Os09t0439800-01
Chr09	irgsp1_rep	CDS	16308532	16309010	.	-	2	Parent=Os09t0439800-01
Chr09	irgsp1_rep	CDS	16308269	16308440	.	-	0	Parent=Os09t0439800-01
Chr09	irgsp1_rep	CDS	16308153	16308172	.	-	2	Parent=Os09t0439800-01
Chr09	irgsp1_rep	three_prime_UTR	16308120	16308152	.	-	.	Parent=Os09t0439800-01
Chr09	irgsp1_rep	three_prime_UTR	16307780	16308009	.	-	.	Parent=Os09t0439800-01
Chr09	irgsp1_rep	mRNA	16319933	16321531	.	-	.	ID=Os09t0440000-01;Name=Os09t0440000-01;Locus_id=Os09g0440000;Note=Similar to H0215A08.3 protein.;Transcript_evidence=AK063191 (DDBJ%2C Best hit);ORF_evidence=Q01N39 (UniProt);NIAS_FLcDNA=001-112-B10;Expression=AK063191;TENOR=Os09t0440000-01;KEGG=Os09t0440000-01
Chr09	irgsp1_rep	CDS	16321334	16321531	.	-	0	Parent=Os09t0440000-01
Chr09	irgsp1_rep	three_prime_UTR	16319933	16321333	.	-	.	Parent=Os09t0440000-01
Chr09	irgsp1_rep	mRNA	16325947	16329911	.	+	.	ID=Os09t0440200-01;Name=Os09t0440200-01;Locus_id=Os09g0440200;Note=BRCT domain containing protein.;Transcript_evidence=AK073097 (DDBJ%2C Best hit);ORF_evidence=B9G3U7 (UniProt);GO=Cellular Component: intracellular (GO:0005622);InterPro=BRCT (IPR001357);NIAS_FLcDNA=J033005K23;Expression=AK073097;TENOR=Os09t0440200-01;KEGG=Os09t0440200-01
Chr09	irgsp1_rep	five_prime_UTR	16325947	16326219	.	+	.	Parent=Os09t0440200-01
Chr09	irgsp1_rep	CDS	16326220	16326418	.	+	0	Parent=Os09t0440200-01
Chr09	irgsp1_rep	CDS	16326549	16326640	.	+	2	Parent=Os09t0440200-01
Chr09	irgsp1_rep	CDS	16326755	16326857	.	+	0	Parent=Os09t0440200-01
Chr09	irgsp1_rep	CDS	16326937	16327199	.	+	2	Parent=Os09t0440200-01
Chr09	irgsp1_rep	CDS	16327516	16327647	.	+	0	Parent=Os09t0440200-01
Chr09	irgsp1_rep	CDS	16327734	16327850	.	+	0	Parent=Os09t0440200-01
Chr09	irgsp1_rep	CDS	16328403	16328555	.	+	0	Parent=Os09t0440200-01
Chr09	irgsp1_rep	CDS	16328966	16329180	.	+	0	Parent=Os09t0440200-01
Chr09	irgsp1_rep	CDS	16329251	16329404	.	+	1	Parent=Os09t0440200-01
Chr09	irgsp1_rep	CDS	16329551	16329769	.	+	0	Parent=Os09t0440200-01
Chr09	irgsp1_rep	three_prime_UTR	16329770	16329911	.	+	.	Parent=Os09t0440200-01
Chr09	irgsp1_rep	mRNA	16327061	16329922	.	+	.	ID=Os09t0440200-02;Name=Os09t0440200-02;Locus_id=Os09g0440200;Note=Similar to predicted protein.;Transcript_evidence=AK063852 (DDBJ%2C Best hit);ORF_evidence=B9G3U7 (UniProt);GO=Cellular Component: intracellular (GO:0005622);InterPro=BRCT (IPR001357);NIAS_FLcDNA=001-122-D01;Expression=AK063852;TENOR=Os09t0440200-02;KEGG=Os09t0440200-02
Chr09	irgsp1_rep	five_prime_UTR	16327061	16327061	.	+	.	Parent=Os09t0440200-02
Chr09	irgsp1_rep	CDS	16327062	16327199	.	+	0	Parent=Os09t0440200-02
Chr09	irgsp1_rep	CDS	16327516	16327647	.	+	0	Parent=Os09t0440200-02
Chr09	irgsp1_rep	CDS	16327734	16327850	.	+	0	Parent=Os09t0440200-02
Chr09	irgsp1_rep	CDS	16328403	16328555	.	+	0	Parent=Os09t0440200-02
Chr09	irgsp1_rep	CDS	16328966	16329180	.	+	0	Parent=Os09t0440200-02
Chr09	irgsp1_rep	CDS	16329251	16329404	.	+	1	Parent=Os09t0440200-02
Chr09	irgsp1_rep	CDS	16329551	16329769	.	+	0	Parent=Os09t0440200-02
Chr09	irgsp1_rep	three_prime_UTR	16329770	16329922	.	+	.	Parent=Os09t0440200-02
Chr09	irgsp1_rep	mRNA	16330131	16338511	.	-	.	ID=Os09t0440300-01;Name=Os09t0440300-01;Locus_id=Os09g0440300;RAP-DB Gene Symbol Synonym(s)=ALDH7%2C OsALDH7;RAP-DB Gene Name Synonym(s)=ALDEHYDE DEHYDROGENASE 7%2C Aldehyde dehydrogenase 7;CGSNL Gene Symbol=ALDH7;CGSNL Gene Name=ALDEHYDE DEHYDROGENASE 7;Oryzabase Gene Symbol Synonym(s)=OsALDH7%2C osaldh7%2C LDH%2C ALDH7B7%2C OsALDH7B6%2C ALDH7B6;Oryzabase Gene Name Synonym(s)=Oryza sativa Aldehyde Dehydrogenase 7%2C Family 7 ALDH%2C lactic acid dehydrogenase%2C Aldehyde Dehydrogenase 7B6;Note=Aldehyde dehydrogenase%2C Seed maturation%2C Maintenance of viability during storage%2C Lysine catabolism;Transcript_evidence=AK119560;ORF_evidence=Q69P84;GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldehyde dehydrogenase N-terminal domain (IPR016162),Aldehyde/histidinol dehydrogenase (IPR016161),Aldehyde dehydrogenase domain (IPR015590),Aldehyde dehydrogenase%2C glutamic acid active site (IPR029510);NIAS_FLcDNA=002-113-B08;Manual Curation=May 12%2C 2017;Literature_PMID=21960163,19052152;Oryzabase=8278;Expression=AK119560;TENOR=Os09t0440300-01;KEGG=Os09t0440300-01 (EC:1.2.1.3);Subcellular location=cytoplasm (GO:0005737)
Chr09	irgsp1_rep	five_prime_UTR	16338352	16338511	.	-	.	Parent=Os09t0440300-01
Chr09	irgsp1_rep	CDS	16338213	16338351	.	-	0	Parent=Os09t0440300-01
Chr09	irgsp1_rep	CDS	16337994	16338079	.	-	2	Parent=Os09t0440300-01
Chr09	irgsp1_rep	CDS	16337061	16337192	.	-	0	Parent=Os09t0440300-01
Chr09	irgsp1_rep	CDS	16336615	16336687	.	-	0	Parent=Os09t0440300-01
Chr09	irgsp1_rep	CDS	16335982	16336004	.	-	2	Parent=Os09t0440300-01
Chr09	irgsp1_rep	CDS	16335829	16335892	.	-	0	Parent=Os09t0440300-01
Chr09	irgsp1_rep	CDS	16335435	16335480	.	-	2	Parent=Os09t0440300-01
Chr09	irgsp1_rep	CDS	16334981	16335161	.	-	1	Parent=Os09t0440300-01
Chr09	irgsp1_rep	CDS	16334592	16334768	.	-	0	Parent=Os09t0440300-01
Chr09	irgsp1_rep	CDS	16334352	16334516	.	-	0	Parent=Os09t0440300-01
Chr09	irgsp1_rep	CDS	16333741	16333881	.	-	0	Parent=Os09t0440300-01
Chr09	irgsp1_rep	CDS	16333524	16333621	.	-	0	Parent=Os09t0440300-01
Chr09	irgsp1_rep	CDS	16332791	16332940	.	-	1	Parent=Os09t0440300-01
Chr09	irgsp1_rep	CDS	16330436	16330490	.	-	1	Parent=Os09t0440300-01
Chr09	irgsp1_rep	three_prime_UTR	16330131	16330435	.	-	.	Parent=Os09t0440300-01
Chr09	irgsp1_rep	mRNA	16330104	16338464	.	-	.	ID=Os09t0440300-02;Name=Os09t0440300-02;Locus_id=Os09g0440300;CGSNL Gene Symbol=ALDH7;CGSNL Gene Name=ALDEHYDE DEHYDROGENASE 7;Oryzabase Gene Symbol Synonym(s)=OsALDH7%2C osaldh7%2C LDH%2C ALDH7B7%2C OsALDH7B6%2C ALDH7B6;Oryzabase Gene Name Synonym(s)=Oryza sativa Aldehyde Dehydrogenase 7%2C Family 7 ALDH%2C lactic acid dehydrogenase%2C Aldehyde Dehydrogenase 7B6;Note=Similar to Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3) (Antiquitin 1) (Matured fruit 60 kDa protein) (MF-60).;Transcript_evidence=AK120185 (DDBJ%2C Best hit),AK060757 (DDBJ%2C Best hit);ORF_evidence=Q9FPK6 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620);InterPro=Aldehyde dehydrogenase domain (IPR015590),Aldehyde dehydrogenase%2C conserved site (IPR016160),Aldehyde/histidinol dehydrogenase (IPR016161),Aldehyde dehydrogenase%2C N-terminal (IPR016162),Aldehyde dehydrogenase%2C C-terminal (IPR016163);NIAS_FLcDNA=J013034F13,001-032-H04;Oryzabase=8278;Expression=AK120185;TENOR=Os09t0440300-02;KEGG=Os09t0440300-02 (EC:1.2.1.3)
Chr09	irgsp1_rep	five_prime_UTR	16338352	16338464	.	-	.	Parent=Os09t0440300-02
Chr09	irgsp1_rep	CDS	16338213	16338351	.	-	0	Parent=Os09t0440300-02
Chr09	irgsp1_rep	CDS	16337994	16338079	.	-	2	Parent=Os09t0440300-02
Chr09	irgsp1_rep	CDS	16337061	16337192	.	-	0	Parent=Os09t0440300-02
Chr09	irgsp1_rep	CDS	16336615	16336687	.	-	0	Parent=Os09t0440300-02
Chr09	irgsp1_rep	CDS	16335982	16336004	.	-	2	Parent=Os09t0440300-02
Chr09	irgsp1_rep	CDS	16335829	16335892	.	-	0	Parent=Os09t0440300-02
Chr09	irgsp1_rep	CDS	16335435	16335480	.	-	2	Parent=Os09t0440300-02
Chr09	irgsp1_rep	CDS	16334981	16335161	.	-	1	Parent=Os09t0440300-02
Chr09	irgsp1_rep	CDS	16334592	16334768	.	-	0	Parent=Os09t0440300-02
Chr09	irgsp1_rep	CDS	16334352	16334516	.	-	0	Parent=Os09t0440300-02
Chr09	irgsp1_rep	CDS	16333741	16333881	.	-	0	Parent=Os09t0440300-02
Chr09	irgsp1_rep	CDS	16333524	16333621	.	-	0	Parent=Os09t0440300-02
Chr09	irgsp1_rep	CDS	16332791	16332940	.	-	1	Parent=Os09t0440300-02
Chr09	irgsp1_rep	CDS	16330436	16330490	.	-	1	Parent=Os09t0440300-02
Chr09	irgsp1_rep	three_prime_UTR	16330104	16330435	.	-	.	Parent=Os09t0440300-02
Chr09	irgsp1_rep	mRNA	16337909	16338464	.	-	.	ID=Os09t0440300-03;Name=Os09t0440300-03;Locus_id=Os09g0440300;CGSNL Gene Symbol=ALDH7;CGSNL Gene Name=ALDEHYDE DEHYDROGENASE 7;Oryzabase Gene Symbol Synonym(s)=OsALDH7%2C osaldh7%2C LDH%2C ALDH7B7%2C OsALDH7B6%2C ALDH7B6;Oryzabase Gene Name Synonym(s)=Oryza sativa Aldehyde Dehydrogenase 7%2C Family 7 ALDH%2C lactic acid dehydrogenase%2C Aldehyde Dehydrogenase 7B6;Note=Similar to Aldehyde dehydrogenase.;Transcript_evidence=AK109168 (DDBJ%2C Best hit);ORF_evidence=Q9FPK6 (UniProt);NIAS_FLcDNA=002-155-H03;Oryzabase=8278;Expression=AK109168;TENOR=Os09t0440300-03;KEGG=Os09t0440300-03 (EC:1.2.1.3)
Chr09	irgsp1_rep	five_prime_UTR	16338352	16338464	.	-	.	Parent=Os09t0440300-03
Chr09	irgsp1_rep	CDS	16338115	16338351	.	-	0	Parent=Os09t0440300-03
Chr09	irgsp1_rep	three_prime_UTR	16337909	16338114	.	-	.	Parent=Os09t0440300-03
Chr09	irgsp1_rep	mRNA	16343798	16344121	.	+	.	ID=Os09t0440600-00;Name=Os09t0440600-00;Locus_id=Os09g0440600;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001175858.1 (RefSeq);TENOR=Os09t0440600-00
Chr09	irgsp1_rep	CDS	16343798	16344121	.	+	0	Parent=Os09t0440600-00
Chr09	irgsp1_rep	mRNA	16347080	16347891	.	+	.	ID=Os09t0440700-02;Name=Os09t0440700-02;Locus_id=Os09g0440700;CGSNL Gene Symbol=COPT7;CGSNL Gene Name=COPPER TRANSPORTER 7;Oryzabase Gene Symbol Synonym(s)=OsCOPT7;Oryzabase Gene Name Synonym(s)=copper transporter 7;Note=Ctr copper transporter family protein.;Transcript_evidence=AK104963 (DDBJ%2C Best hit),AK069588 (DDBJ%2C Best hit);ORF_evidence=Q69P80 (UniProt);GO=Biological Process: copper ion transmembrane transport (GO:0035434),Cellular Component: integral to membrane (GO:0016021),Molecular Function: copper ion transmembrane transporter activity (GO:0005375);InterPro=Ctr copper transporter (IPR007274);NIAS_FLcDNA=001-119-A12,J023020F07;Oryzabase=12128;Expression=AK104963;TENOR=Os09t0440700-02;KEGG=Os09t0440700-02
Chr09	irgsp1_rep	five_prime_UTR	16347080	16347203	.	+	.	Parent=Os09t0440700-02
Chr09	irgsp1_rep	CDS	16347204	16347653	.	+	0	Parent=Os09t0440700-02
Chr09	irgsp1_rep	three_prime_UTR	16347654	16347891	.	+	.	Parent=Os09t0440700-02
Chr09	irgsp1_rep	mRNA	16351480	16354470	.	-	.	ID=Os09t0440851-01;Name=Os09t0440851-01;Locus_id=Os09g0440851;Note=Hypothetical gene.;Transcript_evidence=AK288248 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090014I17;TENOR=Os09t0440851-01;KEGG=Os09t0440851-01
Chr09	irgsp1_rep	five_prime_UTR	16353130	16354470	.	-	.	Parent=Os09t0440851-01
Chr09	irgsp1_rep	CDS	16352908	16353129	.	-	0	Parent=Os09t0440851-01
Chr09	irgsp1_rep	three_prime_UTR	16351480	16352907	.	-	.	Parent=Os09t0440851-01
Chr09	irgsp1_rep	mRNA	16356664	16359509	.	+	.	ID=Os09t0441000-00;Name=Os09t0441000-00;Locus_id=Os09g0441000;Oryzabase Gene Symbol Synonym(s)=OsSub57%2C SUB57;Oryzabase Gene Name Synonym(s)=Subtilisin 57%2C SUBTILISIN 57;Note=Peptidase S8%2C subtilisin-related domain containing protein.;Transcript_evidence=AK334900 (DDBJ);ORF_evidence=B6SZ82 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Proteinase inhibitor%2C propeptide (IPR009020),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);Oryzabase=20141;TENOR=Os09t0441000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	16356664	16356736	.	+	.	Parent=Os09t0441000-00
Chr09	irgsp1_rep	CDS	16356737	16358372	.	+	0	Parent=Os09t0441000-00
Chr09	irgsp1_rep	CDS	16358833	16359509	.	+	2	Parent=Os09t0441000-00
Chr09	irgsp1_rep	mRNA	16361323	16363289	.	-	.	ID=Os09t0441100-01;Name=Os09t0441100-01;Locus_id=Os09g0441100;Note=Similar to CytoChrome P450 monooxygenase CYP92A1.;Transcript_evidence=AK107584 (DDBJ%2C Best hit);ORF_evidence=NP_001147572.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=002-130-E07;Expression=AK107584;TENOR=Os09t0441100-01;KEGG=Os09t0441100-01
Chr09	irgsp1_rep	five_prime_UTR	16363224	16363289	.	-	.	Parent=Os09t0441100-01
Chr09	irgsp1_rep	CDS	16362279	16363223	.	-	0	Parent=Os09t0441100-01
Chr09	irgsp1_rep	CDS	16361545	16362177	.	-	0	Parent=Os09t0441100-01
Chr09	irgsp1_rep	three_prime_UTR	16361323	16361544	.	-	.	Parent=Os09t0441100-01
Chr09	irgsp1_rep	mRNA	16361533	16363094	.	+	.	ID=Os09t0441250-00;Name=Os09t0441250-00;Locus_id=Os09g0441250;Note=Conserved hypothetical protein.;Transcript_evidence=EU958027 (DDBJ);ORF_evidence=C0P7R0 (UniProt);TENOR=Os09t0441250-00
Chr09	irgsp1_rep	CDS	16361533	16362201	.	+	0	Parent=Os09t0441250-00
Chr09	irgsp1_rep	three_prime_UTR	16362202	16362594	.	+	.	Parent=Os09t0441250-00
Chr09	irgsp1_rep	three_prime_UTR	16362660	16363094	.	+	.	Parent=Os09t0441250-00
Chr09	irgsp1_rep	mRNA	16387840	16390388	.	+	.	ID=Os09t0441400-01;Name=Os09t0441400-01;Locus_id=Os09g0441400;Oryzabase Gene Name Synonym(s)=cytoChrome P450 71A1;Note=Similar to Elicitor-inducible cytoChrome P450.;Transcript_evidence=AK111616 (DDBJ%2C Best hit);ORF_evidence=NP_001147572.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J013107D15;Oryzabase=22499;Expression=AK111616;TENOR=Os09t0441400-01;KEGG=Os09t0441400-01 (EC:1.14.14.1)
Chr09	irgsp1_rep	five_prime_UTR	16387840	16387911	.	+	.	Parent=Os09t0441400-01
Chr09	irgsp1_rep	CDS	16387912	16388823	.	+	0	Parent=Os09t0441400-01
Chr09	irgsp1_rep	CDS	16389551	16390183	.	+	0	Parent=Os09t0441400-01
Chr09	irgsp1_rep	three_prime_UTR	16390184	16390388	.	+	.	Parent=Os09t0441400-01
Chr09	irgsp1_rep	mRNA	16392870	16394251	.	+	.	ID=Os09t0441600-00;Name=Os09t0441600-00;Locus_id=Os09g0441600;Note=Similar to flavonoid 3-monooxygenase.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001147572.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);TENOR=Os09t0441600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	16392870	16393790	.	+	0	Parent=Os09t0441600-00
Chr09	irgsp1_rep	CDS	16394165	16394251	.	+	0	Parent=Os09t0441600-00
Chr09	irgsp1_rep	mRNA	16395700	16396467	.	+	.	ID=Os09t0441625-00;Name=Os09t0441625-00;Locus_id=Os09g0441625;Note=Similar to flavonoid 3-monooxygenase.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001147572.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os09t0441625-00
Chr09	irgsp1_rep	CDS	16395700	16396467	.	+	0	Parent=Os09t0441625-00
Chr09	irgsp1_rep	mRNA	16403633	16408069	.	+	.	ID=Os09t0441650-01;Name=Os09t0441650-01;Locus_id=Os09g0441650;Note=Hypothetical gene.;Transcript_evidence=AK241119 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065094C22;TENOR=Os09t0441650-01;KEGG=Os09t0441650-01
Chr09	irgsp1_rep	five_prime_UTR	16403633	16404439	.	+	.	Parent=Os09t0441650-01
Chr09	irgsp1_rep	five_prime_UTR	16407060	16407386	.	+	.	Parent=Os09t0441650-01
Chr09	irgsp1_rep	CDS	16407387	16407638	.	+	0	Parent=Os09t0441650-01
Chr09	irgsp1_rep	three_prime_UTR	16407639	16408069	.	+	.	Parent=Os09t0441650-01
Chr09	irgsp1_rep	mRNA	16403807	16407995	.	-	.	ID=Os09t0441700-00;Name=Os09t0441700-00;Locus_id=Os09g0441700;Note=Putative cytoChrome P450 protein%2C Similar to flavonoid 3-monooxygenase.;Transcript_evidence=BT040234 (DDBJ);ORF_evidence=NP_001147572.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);Manual Curation=September 4%2C 2018;TENOR=Os09t0441700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	16407033	16407995	.	-	0	Parent=Os09t0441700-00
Chr09	irgsp1_rep	CDS	16403807	16404439	.	-	0	Parent=Os09t0441700-00
Chr09	irgsp1_rep	mRNA	16411151	16415851	.	+	.	ID=Os09t0441900-01;Name=Os09t0441900-01;Locus_id=Os09g0441900;RAP-DB Gene Symbol Synonym(s)=DEP1%2C OsDEP1%2C EP%2C qPE9-1%2C DN1%2C DEP1/DN1/qPE9-1%2C qNGR9;RAP-DB Gene Name Synonym(s)=DENSE AND ERECT PANICLE 1%2C dense and erect panicle 1%2C erect-pose panicle%2C DENSE PANICLE 1%2C DENSE AND ERECT PANICLE1%2C DENSE AND ERECT PANICLES 1;CGSNL Gene Symbol=DEP1;CGSNL Gene Name=DENSE AND ERECT PANICLE 1;Oryzabase Gene Symbol Synonym(s)=OsDEP1%2C EP%2C qPE9-1%2C DN1%2C DEP1/DN1/qPE9-1%2C qNGR9%2C qDEP1%2C RGG4/DEP1/DN1/qPE9-1/OsGGC3%2C RGG4%2C OsDN1%2C OsGGC3%2C GGC3;Oryzabase Gene Name Synonym(s)=dense and erect panicle 1%2C erect-pose panicle%2C DENSE PANICLE 1%2C DENSE AND ERECT PANICLE1%2C DENSE AND ERECT PANICLES 1%2C G gamma subunit DEP1%2C Heterotrimeric G Protein gamma4 Subunit;Note=Unknown phosphatidylethanolamine-binding protein (PEBP) like domain protein%2C 426-amino-acid protein%2C homologous to the keratin-associated protein (KAP) 5-4 family%2C Panicle architecture%2C Panicle erectness;Transcript_evidence=FJ039905 (Genbank),AK101247 (Genbank);ORF_evidence=Q67UU9 (UniProt);NIAS_FLcDNA=J033032C18;Manual Curation=October 19%2C 2009;Literature_PMID=19305410,19546322;Oryzabase=8503;Expression=AK101247;TENOR=Os09t0441900-01;KEGG=Os09t0441900-01
Chr09	irgsp1_rep	five_prime_UTR	16411151	16411553	.	+	.	Parent=Os09t0441900-01
Chr09	irgsp1_rep	CDS	16411554	16411682	.	+	0	Parent=Os09t0441900-01
Chr09	irgsp1_rep	CDS	16412895	16412953	.	+	0	Parent=Os09t0441900-01
Chr09	irgsp1_rep	CDS	16414109	16414153	.	+	1	Parent=Os09t0441900-01
Chr09	irgsp1_rep	CDS	16414240	16414284	.	+	1	Parent=Os09t0441900-01
Chr09	irgsp1_rep	CDS	16414700	16415702	.	+	1	Parent=Os09t0441900-01
Chr09	irgsp1_rep	three_prime_UTR	16415703	16415851	.	+	.	Parent=Os09t0441900-01
Chr09	irgsp1_rep	mRNA	16411489	16415851	.	+	.	ID=Os09t0441900-02;Name=Os09t0441900-02;Locus_id=Os09g0441900;CGSNL Gene Symbol=DEP1;CGSNL Gene Name=DENSE AND ERECT PANICLE 1;Oryzabase Gene Symbol Synonym(s)=OsDEP1%2C EP%2C qPE9-1%2C DN1%2C DEP1/DN1/qPE9-1%2C qNGR9%2C qDEP1%2C RGG4/DEP1/DN1/qPE9-1/OsGGC3%2C RGG4%2C OsDN1%2C OsGGC3%2C GGC3;Oryzabase Gene Name Synonym(s)=dense and erect panicle 1%2C erect-pose panicle%2C DENSE PANICLE 1%2C DENSE AND ERECT PANICLE1%2C DENSE AND ERECT PANICLES 1%2C G gamma subunit DEP1%2C Heterotrimeric G Protein gamma4 Subunit;Note=Similar to Keratin associated protein.;Transcript_evidence=AK064043 (DDBJ%2C Best hit);ORF_evidence=B8Y995 (UniProt);NIAS_FLcDNA=001-125-D04;Oryzabase=8503;Expression=AK064043;TENOR=Os09t0441900-02;KEGG=Os09t0441900-02
Chr09	irgsp1_rep	five_prime_UTR	16411489	16411553	.	+	.	Parent=Os09t0441900-02
Chr09	irgsp1_rep	CDS	16411554	16411682	.	+	0	Parent=Os09t0441900-02
Chr09	irgsp1_rep	CDS	16412895	16412953	.	+	0	Parent=Os09t0441900-02
Chr09	irgsp1_rep	CDS	16414078	16414117	.	+	1	Parent=Os09t0441900-02
Chr09	irgsp1_rep	three_prime_UTR	16414118	16414153	.	+	.	Parent=Os09t0441900-02
Chr09	irgsp1_rep	three_prime_UTR	16414240	16414284	.	+	.	Parent=Os09t0441900-02
Chr09	irgsp1_rep	three_prime_UTR	16414700	16415851	.	+	.	Parent=Os09t0441900-02
Chr09	irgsp1_rep	mRNA	16412084	16415851	.	+	.	ID=Os09t0441900-03;Name=Os09t0441900-03;Locus_id=Os09g0441900;CGSNL Gene Symbol=DEP1;CGSNL Gene Name=DENSE AND ERECT PANICLE 1;Oryzabase Gene Symbol Synonym(s)=OsDEP1%2C EP%2C qPE9-1%2C DN1%2C DEP1/DN1/qPE9-1%2C qNGR9%2C qDEP1%2C RGG4/DEP1/DN1/qPE9-1/OsGGC3%2C RGG4%2C OsDN1%2C OsGGC3%2C GGC3;Oryzabase Gene Name Synonym(s)=dense and erect panicle 1%2C erect-pose panicle%2C DENSE PANICLE 1%2C DENSE AND ERECT PANICLE1%2C DENSE AND ERECT PANICLES 1%2C G gamma subunit DEP1%2C Heterotrimeric G Protein gamma4 Subunit;Note=Similar to Keratin associated protein.;Transcript_evidence=AK102904 (DDBJ%2C Best hit);ORF_evidence=B8Y995 (UniProt);NIAS_FLcDNA=J033113E20;Oryzabase=8503;Expression=AK102904;TENOR=Os09t0441900-03;KEGG=Os09t0441900-03
Chr09	irgsp1_rep	five_prime_UTR	16412084	16412894	.	+	.	Parent=Os09t0441900-03
Chr09	irgsp1_rep	CDS	16412895	16412953	.	+	0	Parent=Os09t0441900-03
Chr09	irgsp1_rep	CDS	16414109	16414153	.	+	1	Parent=Os09t0441900-03
Chr09	irgsp1_rep	CDS	16414240	16414284	.	+	1	Parent=Os09t0441900-03
Chr09	irgsp1_rep	CDS	16414700	16415702	.	+	1	Parent=Os09t0441900-03
Chr09	irgsp1_rep	three_prime_UTR	16415703	16415851	.	+	.	Parent=Os09t0441900-03
Chr09	irgsp1_rep	mRNA	16413884	16414484	.	+	.	ID=Os09t0441900-04;Name=Os09t0441900-04;Locus_id=Os09g0441900;CGSNL Gene Symbol=DEP1;CGSNL Gene Name=DENSE AND ERECT PANICLE 1;Oryzabase Gene Symbol Synonym(s)=OsDEP1%2C EP%2C qPE9-1%2C DN1%2C DEP1/DN1/qPE9-1%2C qNGR9%2C qDEP1%2C RGG4/DEP1/DN1/qPE9-1/OsGGC3%2C RGG4%2C OsDN1%2C OsGGC3%2C GGC3;Oryzabase Gene Name Synonym(s)=dense and erect panicle 1%2C erect-pose panicle%2C DENSE PANICLE 1%2C DENSE AND ERECT PANICLE1%2C DENSE AND ERECT PANICLES 1%2C G gamma subunit DEP1%2C Heterotrimeric G Protein gamma4 Subunit;Note=Similar to Truncated keratin associated protein.;Transcript_evidence=AK062809 (DDBJ%2C Best hit);ORF_evidence=B9VI84 (UniProt);NIAS_FLcDNA=001-107-D09;Oryzabase=8503;Expression=AK062809;TENOR=Os09t0441900-04;KEGG=Os09t0441900-04
Chr09	irgsp1_rep	five_prime_UTR	16413884	16414085	.	+	.	Parent=Os09t0441900-04
Chr09	irgsp1_rep	CDS	16414086	16414153	.	+	0	Parent=Os09t0441900-04
Chr09	irgsp1_rep	CDS	16414240	16414429	.	+	1	Parent=Os09t0441900-04
Chr09	irgsp1_rep	three_prime_UTR	16414430	16414484	.	+	.	Parent=Os09t0441900-04
Chr09	irgsp1_rep	mRNA	16418322	16418999	.	-	.	ID=Os09t0442000-00;Name=Os09t0442000-00;Locus_id=Os09g0442000;Note=Similar to DNA-directed RNA polymerase.;Transcript_evidence=ab initio prediction;ORF_evidence=Q67UU8 (UniProt);TENOR=Os09t0442000-00;KEGG=Os09t0442000-00
Chr09	irgsp1_rep	CDS	16418322	16418999	.	-	0	Parent=Os09t0442000-00
Chr09	irgsp1_rep	mRNA	16422290	16425218	.	-	.	ID=Os09t0442100-01;Name=Os09t0442100-01;Locus_id=Os09g0442100;CGSNL Gene Symbol=RLCK272;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 272;Oryzabase Gene Symbol Synonym(s)=OsRLCK272%2C PTK14%2C OsPTK14;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 272%2C Protein Tyrosine Kinase 14;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK111977 (DDBJ%2C Best hit);ORF_evidence=B6ST24 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=001-007-H12;Oryzabase=18961;Expression=AK111977;TENOR=Os09t0442100-01;KEGG=Os09t0442100-01
Chr09	irgsp1_rep	five_prime_UTR	16425074	16425218	.	-	.	Parent=Os09t0442100-01
Chr09	irgsp1_rep	CDS	16424672	16425073	.	-	0	Parent=Os09t0442100-01
Chr09	irgsp1_rep	CDS	16424415	16424550	.	-	0	Parent=Os09t0442100-01
Chr09	irgsp1_rep	CDS	16423860	16423996	.	-	2	Parent=Os09t0442100-01
Chr09	irgsp1_rep	CDS	16422537	16423238	.	-	0	Parent=Os09t0442100-01
Chr09	irgsp1_rep	three_prime_UTR	16422290	16422536	.	-	.	Parent=Os09t0442100-01
Chr09	irgsp1_rep	mRNA	16439142	16443578	.	+	.	ID=Os09t0442300-01;Name=Os09t0442300-01;Locus_id=Os09g0442300;CGSNL Gene Name=ORYZAIN GAMMA CHAIN;Oryzabase Gene Name Synonym(s)=oryzain gamma;Note=Similar to Oryzain gamma chain (Fragment).;Transcript_evidence=AK066748 (DDBJ%2C Best hit);ORF_evidence=A6N1F3 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase%2C cysteine peptidase active site (IPR000169),Peptidase C1A%2C papain C-terminal (IPR000668),Peptidase C1A%2C papain (IPR013128),Proteinase inhibitor I29%2C cathepsin propeptide (IPR013201);NIAS_FLcDNA=J013074D19;Oryzabase=13727;TENOR=Os09t0442300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	16439142	16439176	.	+	.	Parent=Os09t0442300-01
Chr09	irgsp1_rep	CDS	16439177	16439406	.	+	0	Parent=Os09t0442300-01
Chr09	irgsp1_rep	CDS	16439535	16439656	.	+	1	Parent=Os09t0442300-01
Chr09	irgsp1_rep	CDS	16439732	16439850	.	+	2	Parent=Os09t0442300-01
Chr09	irgsp1_rep	CDS	16440549	16440622	.	+	0	Parent=Os09t0442300-01
Chr09	irgsp1_rep	CDS	16442352	16442616	.	+	1	Parent=Os09t0442300-01
Chr09	irgsp1_rep	CDS	16442709	16442840	.	+	0	Parent=Os09t0442300-01
Chr09	irgsp1_rep	CDS	16442964	16443099	.	+	0	Parent=Os09t0442300-01
Chr09	irgsp1_rep	CDS	16443208	16443245	.	+	2	Parent=Os09t0442300-01
Chr09	irgsp1_rep	three_prime_UTR	16443246	16443578	.	+	.	Parent=Os09t0442300-01
Chr09	irgsp1_rep	mRNA	16444342	16447967	.	+	.	ID=Os09t0442400-01;Name=Os09t0442400-01;Locus_id=Os09g0442400;Note=t-snare domain containing protein.;Transcript_evidence=AK106970 (DDBJ%2C Best hit);ORF_evidence=A2Z1Q5 (UniProt);NIAS_FLcDNA=002-119-G03;Expression=AK106970;TENOR=Os09t0442400-01;KEGG=Os09t0442400-01
Chr09	irgsp1_rep	five_prime_UTR	16444342	16444396	.	+	.	Parent=Os09t0442400-01
Chr09	irgsp1_rep	five_prime_UTR	16445020	16445165	.	+	.	Parent=Os09t0442400-01
Chr09	irgsp1_rep	five_prime_UTR	16445365	16445436	.	+	.	Parent=Os09t0442400-01
Chr09	irgsp1_rep	CDS	16445437	16445942	.	+	0	Parent=Os09t0442400-01
Chr09	irgsp1_rep	CDS	16446021	16446608	.	+	1	Parent=Os09t0442400-01
Chr09	irgsp1_rep	CDS	16446685	16446811	.	+	1	Parent=Os09t0442400-01
Chr09	irgsp1_rep	CDS	16446942	16447128	.	+	0	Parent=Os09t0442400-01
Chr09	irgsp1_rep	CDS	16447236	16447392	.	+	2	Parent=Os09t0442400-01
Chr09	irgsp1_rep	CDS	16447498	16447852	.	+	1	Parent=Os09t0442400-01
Chr09	irgsp1_rep	three_prime_UTR	16447853	16447967	.	+	.	Parent=Os09t0442400-01
Chr09	irgsp1_rep	mRNA	16455568	16458585	.	+	.	ID=Os09t0442600-01;Name=Os09t0442600-01;Locus_id=Os09g0442600;Note=Similar to Plastid (P)ppGpp synthase.;Transcript_evidence=AK100279 (DDBJ%2C Best hit);ORF_evidence=Q7XAP3 (UniProt);GO=Biological Process: guanosine tetraphosphate metabolic process (GO:0015969),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphoric diester hydrolase activity (GO:0008081),Molecular Function: metal ion binding (GO:0046872);InterPro=Metal-dependent phosphohydrolase%2C HD domain (IPR003607),RelA/SpoT protein (IPR004811),Metal-dependent phosphohydrolase%2C HD subdomain (IPR006674),RelA/SpoT (IPR007685);NIAS_FLcDNA=J023073M22;Oryzabase=20207;Expression=AK100279;TENOR=Os09t0442600-01;KEGG=Os09t0442600-01
Chr09	irgsp1_rep	CDS	16455568	16456020	.	+	0	Parent=Os09t0442600-01
Chr09	irgsp1_rep	CDS	16456124	16456309	.	+	0	Parent=Os09t0442600-01
Chr09	irgsp1_rep	CDS	16456766	16457226	.	+	0	Parent=Os09t0442600-01
Chr09	irgsp1_rep	CDS	16457329	16457487	.	+	1	Parent=Os09t0442600-01
Chr09	irgsp1_rep	CDS	16457565	16457916	.	+	1	Parent=Os09t0442600-01
Chr09	irgsp1_rep	CDS	16458011	16458304	.	+	0	Parent=Os09t0442600-01
Chr09	irgsp1_rep	three_prime_UTR	16458305	16458585	.	+	.	Parent=Os09t0442600-01
Chr09	irgsp1_rep	mRNA	16461644	16467575	.	-	.	ID=Os09t0442700-01;Name=Os09t0442700-01;Locus_id=Os09g0442700;RAP-DB Gene Symbol Synonym(s)=OsDDM1a;RAP-DB Gene Name Synonym(s)=Decrease in DNA Methylation 1a;Oryzabase Gene Symbol Synonym(s)=OsDDM1a%2C DDM1a%2C DLN225%2C OsDLN225;Oryzabase Gene Name Synonym(s)=Decrease in DNA Methylation 1a%2C Deficient in DNA Methylation 1a%2C DECREASE IN DNA METHYLATION1a%2C DLN repressor 225%2C DLN motif protein 225;Note=Chromatin remodeling factor%2C Genome-wide DNA methylation;Transcript_evidence=AB177378;ORF_evidence=Q05KP6;GO=Molecular Function: ATP binding (GO:0005524);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),Helicase superfamily 1/2%2C ATP-binding domain (IPR014001),SNF2-related%2C N-terminal domain (IPR000330),Helicase%2C C-terminal (IPR001650);Manual Curation=July 15%2C 2016;Literature_PMID=22915302,27208249;Oryzabase=11854;TENOR=Os09t0442700-00
Chr09	irgsp1_rep	five_prime_UTR	16467490	16467575	.	-	.	Parent=Os09t0442700-01
Chr09	irgsp1_rep	five_prime_UTR	16467276	16467315	.	-	.	Parent=Os09t0442700-01
Chr09	irgsp1_rep	CDS	16467171	16467275	.	-	0	Parent=Os09t0442700-01
Chr09	irgsp1_rep	CDS	16466568	16467062	.	-	0	Parent=Os09t0442700-01
Chr09	irgsp1_rep	CDS	16466373	16466474	.	-	0	Parent=Os09t0442700-01
Chr09	irgsp1_rep	CDS	16465307	16465653	.	-	0	Parent=Os09t0442700-01
Chr09	irgsp1_rep	CDS	16465052	16465238	.	-	1	Parent=Os09t0442700-01
Chr09	irgsp1_rep	CDS	16464785	16464960	.	-	0	Parent=Os09t0442700-01
Chr09	irgsp1_rep	CDS	16463760	16464016	.	-	1	Parent=Os09t0442700-01
Chr09	irgsp1_rep	CDS	16463568	16463672	.	-	2	Parent=Os09t0442700-01
Chr09	irgsp1_rep	CDS	16463391	16463485	.	-	2	Parent=Os09t0442700-01
Chr09	irgsp1_rep	CDS	16463164	16463283	.	-	0	Parent=Os09t0442700-01
Chr09	irgsp1_rep	CDS	16462864	16462983	.	-	0	Parent=Os09t0442700-01
Chr09	irgsp1_rep	CDS	16462475	16462573	.	-	0	Parent=Os09t0442700-01
Chr09	irgsp1_rep	CDS	16462298	16462399	.	-	0	Parent=Os09t0442700-01
Chr09	irgsp1_rep	CDS	16461975	16462202	.	-	0	Parent=Os09t0442700-01
Chr09	irgsp1_rep	three_prime_UTR	16461644	16461974	.	-	.	Parent=Os09t0442700-01
Chr09	irgsp1_rep	mRNA	16470986	16474480	.	+	.	ID=Os09t0442800-01;Name=Os09t0442800-01;Locus_id=Os09g0442800;Note=Conserved hypothetical protein.;Transcript_evidence=AK061348 (DDBJ%2C Best hit);ORF_evidence=B8BCF8 (UniProt);NIAS_FLcDNA=006-303-F02;Expression=AK061348;TENOR=Os09t0442800-01;KEGG=Os09t0442800-01
Chr09	irgsp1_rep	five_prime_UTR	16470986	16471059	.	+	.	Parent=Os09t0442800-01
Chr09	irgsp1_rep	CDS	16471060	16471254	.	+	0	Parent=Os09t0442800-01
Chr09	irgsp1_rep	CDS	16472235	16472286	.	+	0	Parent=Os09t0442800-01
Chr09	irgsp1_rep	CDS	16472493	16472541	.	+	2	Parent=Os09t0442800-01
Chr09	irgsp1_rep	CDS	16473053	16473148	.	+	1	Parent=Os09t0442800-01
Chr09	irgsp1_rep	CDS	16473381	16473434	.	+	1	Parent=Os09t0442800-01
Chr09	irgsp1_rep	CDS	16473534	16473599	.	+	1	Parent=Os09t0442800-01
Chr09	irgsp1_rep	CDS	16473825	16473903	.	+	1	Parent=Os09t0442800-01
Chr09	irgsp1_rep	CDS	16474041	16474118	.	+	0	Parent=Os09t0442800-01
Chr09	irgsp1_rep	three_prime_UTR	16474119	16474480	.	+	.	Parent=Os09t0442800-01
Chr09	irgsp1_rep	mRNA	16470990	16474558	.	+	.	ID=Os09t0442800-02;Name=Os09t0442800-02;Locus_id=Os09g0442800;Note=Conserved hypothetical protein.;Transcript_evidence=AK071116 (DDBJ%2C Best hit);ORF_evidence=B8BCF8 (UniProt);NIAS_FLcDNA=J023081A17;TENOR=Os09t0442800-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	16470990	16471059	.	+	.	Parent=Os09t0442800-02
Chr09	irgsp1_rep	CDS	16471060	16471254	.	+	0	Parent=Os09t0442800-02
Chr09	irgsp1_rep	CDS	16472235	16472426	.	+	0	Parent=Os09t0442800-02
Chr09	irgsp1_rep	three_prime_UTR	16472427	16473434	.	+	.	Parent=Os09t0442800-02
Chr09	irgsp1_rep	three_prime_UTR	16473534	16473599	.	+	.	Parent=Os09t0442800-02
Chr09	irgsp1_rep	three_prime_UTR	16473825	16473903	.	+	.	Parent=Os09t0442800-02
Chr09	irgsp1_rep	three_prime_UTR	16474041	16474558	.	+	.	Parent=Os09t0442800-02
Chr09	irgsp1_rep	mRNA	16474067	16474558	.	+	.	ID=Os09t0442800-03;Name=Os09t0442800-03;Locus_id=Os09g0442800;Note=Non-protein coding transcript.;Transcript_evidence=AK058508 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-016-G04;TENOR=Os09t0442800-03
Chr09	irgsp1_rep	exon	16474067	16474558	.	+	.	Parent=Os09t0442800-03
Chr09	irgsp1_rep	mRNA	16476923	16481307	.	-	.	ID=Os09t0442850-00;Name=Os09t0442850-00;Locus_id=Os09g0442850;Note=Hypothetical protein.;Transcript_evidence=tplb0043j06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0442850-00
Chr09	irgsp1_rep	five_prime_UTR	16480987	16481307	.	-	.	Parent=Os09t0442850-00
Chr09	irgsp1_rep	five_prime_UTR	16480362	16480856	.	-	.	Parent=Os09t0442850-00
Chr09	irgsp1_rep	five_prime_UTR	16479790	16480022	.	-	.	Parent=Os09t0442850-00
Chr09	irgsp1_rep	five_prime_UTR	16479574	16479706	.	-	.	Parent=Os09t0442850-00
Chr09	irgsp1_rep	five_prime_UTR	16479322	16479415	.	-	.	Parent=Os09t0442850-00
Chr09	irgsp1_rep	CDS	16479289	16479321	.	-	0	Parent=Os09t0442850-00
Chr09	irgsp1_rep	CDS	16479002	16479130	.	-	0	Parent=Os09t0442850-00
Chr09	irgsp1_rep	CDS	16478784	16478936	.	-	0	Parent=Os09t0442850-00
Chr09	irgsp1_rep	CDS	16477276	16477656	.	-	0	Parent=Os09t0442850-00
Chr09	irgsp1_rep	three_prime_UTR	16476923	16477275	.	-	.	Parent=Os09t0442850-00
Chr09	irgsp1_rep	mRNA	16477066	16481692	.	+	.	ID=Os09t0442900-01;Name=Os09t0442900-01;Locus_id=Os09g0442900;Note=Similar to Axi 1 (Auxin-independent growth promoter)-like protein.;Transcript_evidence=AK100287 (DDBJ%2C Best hit);ORF_evidence=Q9FH12 (UniProt);InterPro=GDP-fucose protein O-fucosyltransferase (IPR019378),O-fucosyltransferase%2C plant (IPR024709);NIAS_FLcDNA=J023075G23;Expression=AK100287;TENOR=Os09t0442900-01;KEGG=Os09t0442900-01
Chr09	irgsp1_rep	five_prime_UTR	16477066	16477186	.	+	.	Parent=Os09t0442900-01
Chr09	irgsp1_rep	CDS	16477187	16477699	.	+	0	Parent=Os09t0442900-01
Chr09	irgsp1_rep	CDS	16478819	16478939	.	+	0	Parent=Os09t0442900-01
Chr09	irgsp1_rep	CDS	16479027	16479098	.	+	2	Parent=Os09t0442900-01
Chr09	irgsp1_rep	CDS	16479182	16479252	.	+	2	Parent=Os09t0442900-01
Chr09	irgsp1_rep	CDS	16479329	16479417	.	+	0	Parent=Os09t0442900-01
Chr09	irgsp1_rep	CDS	16479576	16479708	.	+	1	Parent=Os09t0442900-01
Chr09	irgsp1_rep	CDS	16479792	16480022	.	+	0	Parent=Os09t0442900-01
Chr09	irgsp1_rep	CDS	16480362	16480840	.	+	0	Parent=Os09t0442900-01
Chr09	irgsp1_rep	CDS	16480971	16481178	.	+	1	Parent=Os09t0442900-01
Chr09	irgsp1_rep	three_prime_UTR	16481179	16481692	.	+	.	Parent=Os09t0442900-01
Chr09	irgsp1_rep	mRNA	16484686	16486949	.	-	.	ID=Os09t0443000-00;Name=Os09t0443000-00;Locus_id=Os09g0443000;Oryzabase Gene Symbol Synonym(s)=OsFbox487%2C Os_F0548;Oryzabase Gene Name Synonym(s)=F-box protein 487;Note=F-box domain%2C Skp2-like domain containing protein.;Transcript_evidence=AK365865 (DDBJ);ORF_evidence=B9G3V7 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);Oryzabase=17257;TENOR=Os09t0443000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	16486467	16486949	.	-	0	Parent=Os09t0443000-00
Chr09	irgsp1_rep	three_prime_UTR	16485959	16486466	.	-	.	Parent=Os09t0443000-00
Chr09	irgsp1_rep	three_prime_UTR	16485056	16485222	.	-	.	Parent=Os09t0443000-00
Chr09	irgsp1_rep	three_prime_UTR	16484686	16484967	.	-	.	Parent=Os09t0443000-00
Chr09	irgsp1_rep	mRNA	16499145	16502139	.	-	.	ID=Os09t0443400-00;Name=Os09t0443400-00;Locus_id=Os09g0443400;Note=Hypothetical conserved gene.;Transcript_evidence=AK109751 (DDBJ%2C Secondary hit);ORF_evidence=Q53NH3 (UniProt);Expression=AK109751;TENOR=Os09t0443400-00;KEGG=Os09t0443400-00
Chr09	irgsp1_rep	five_prime_UTR	16502088	16502139	.	-	.	Parent=Os09t0443400-00
Chr09	irgsp1_rep	CDS	16502048	16502087	.	-	0	Parent=Os09t0443400-00
Chr09	irgsp1_rep	CDS	16501968	16502039	.	-	2	Parent=Os09t0443400-00
Chr09	irgsp1_rep	CDS	16501763	16501941	.	-	2	Parent=Os09t0443400-00
Chr09	irgsp1_rep	three_prime_UTR	16501752	16501762	.	-	.	Parent=Os09t0443400-00
Chr09	irgsp1_rep	three_prime_UTR	16501218	16501720	.	-	.	Parent=Os09t0443400-00
Chr09	irgsp1_rep	three_prime_UTR	16500650	16500980	.	-	.	Parent=Os09t0443400-00
Chr09	irgsp1_rep	three_prime_UTR	16499145	16499788	.	-	.	Parent=Os09t0443400-00
Chr09	irgsp1_rep	mRNA	16505480	16508806	.	-	.	ID=Os09t0443500-01;Name=Os09t0443500-01;Locus_id=Os09g0443500;Oryzabase Gene Symbol Synonym(s)=OsMED20_1%2C MED20_1;Oryzabase Gene Name Synonym(s)=Mediator 20_1;Note=TATA-binding related factor domain containing protein.;Transcript_evidence=AK063205 (DDBJ%2C Best hit);ORF_evidence=B8BCG3 (UniProt);GO=Biological Process: regulation of transcription from RNA polymerase II promoter (GO:0006357),Cellular Component: mediator complex (GO:0016592),Molecular Function: RNA polymerase II transcription cofactor activity (GO:0001104);InterPro=Mediator complex%2C subunit Med20 (IPR013921);NIAS_FLcDNA=001-112-C12;Oryzabase=20969;Expression=AK063205;TENOR=Os09t0443500-01;KEGG=Os09t0443500-01
Chr09	irgsp1_rep	five_prime_UTR	16508748	16508806	.	-	.	Parent=Os09t0443500-01
Chr09	irgsp1_rep	CDS	16508731	16508747	.	-	0	Parent=Os09t0443500-01
Chr09	irgsp1_rep	CDS	16508278	16508635	.	-	1	Parent=Os09t0443500-01
Chr09	irgsp1_rep	CDS	16506622	16506711	.	-	0	Parent=Os09t0443500-01
Chr09	irgsp1_rep	CDS	16505693	16505920	.	-	0	Parent=Os09t0443500-01
Chr09	irgsp1_rep	three_prime_UTR	16505480	16505692	.	-	.	Parent=Os09t0443500-01
Chr09	irgsp1_rep	mRNA	16516628	16517238	.	+	.	ID=Os09t0443700-01;Name=Os09t0443700-01;Locus_id=Os09g0443700;CGSNL Gene Symbol=BG4;CGSNL Gene Name=BIG GRAIN4;Oryzabase Gene Symbol Synonym(s)=OsaBG4%2C OsBG4;Oryzabase Gene Name Synonym(s)=big grain4%2C big grain 4;Note=Hypothetical conserved gene.;Transcript_evidence=AK109285 (DDBJ%2C Best hit);ORF_evidence=A2Z1R5 (UniProt);NIAS_FLcDNA=002-188-C02;Oryzabase=22098;Expression=AK109285;TENOR=Os09t0443700-01;KEGG=Os09t0443700-01
Chr09	irgsp1_rep	five_prime_UTR	16516628	16516731	.	+	.	Parent=Os09t0443700-01
Chr09	irgsp1_rep	CDS	16516732	16517238	.	+	0	Parent=Os09t0443700-01
Chr09	irgsp1_rep	mRNA	16517244	16517767	.	+	.	ID=Os09t0443800-01;Name=Os09t0443800-01;Locus_id=Os09g0443800;CGSNL Gene Symbol=BG4;CGSNL Gene Name=BIG GRAIN4;Oryzabase Gene Symbol Synonym(s)=OsaBG4%2C OsBG4;Oryzabase Gene Name Synonym(s)=big grain4%2C big grain 4;Note=Conserved hypothetical protein.;Transcript_evidence=AK107689 (DDBJ%2C Best hit);ORF_evidence=A2Z1R5 (UniProt);NIAS_FLcDNA=002-132-B09;Oryzabase=22098;TENOR=Os09t0443800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	16517244	16517244	.	+	.	Parent=Os09t0443800-01
Chr09	irgsp1_rep	CDS	16517245	16517748	.	+	0	Parent=Os09t0443800-01
Chr09	irgsp1_rep	three_prime_UTR	16517749	16517767	.	+	.	Parent=Os09t0443800-01
Chr09	irgsp1_rep	mRNA	16530344	16538716	.	+	.	ID=Os09t0444100-00;Name=Os09t0444100-00;Locus_id=Os09g0444100;Note=Similar to Minus dominance protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G3W3 (UniProt);InterPro=Plant regulator RWP-RK (IPR003035);TENOR=Os09t0444100-00;KEGG=Os09t0444100-00
Chr09	irgsp1_rep	CDS	16530344	16530500	.	+	0	Parent=Os09t0444100-00
Chr09	irgsp1_rep	CDS	16530799	16530916	.	+	2	Parent=Os09t0444100-00
Chr09	irgsp1_rep	CDS	16531015	16531118	.	+	1	Parent=Os09t0444100-00
Chr09	irgsp1_rep	CDS	16533927	16534132	.	+	2	Parent=Os09t0444100-00
Chr09	irgsp1_rep	CDS	16534218	16534370	.	+	0	Parent=Os09t0444100-00
Chr09	irgsp1_rep	CDS	16534493	16534655	.	+	0	Parent=Os09t0444100-00
Chr09	irgsp1_rep	CDS	16535693	16535860	.	+	2	Parent=Os09t0444100-00
Chr09	irgsp1_rep	CDS	16536400	16536517	.	+	2	Parent=Os09t0444100-00
Chr09	irgsp1_rep	CDS	16536643	16536746	.	+	1	Parent=Os09t0444100-00
Chr09	irgsp1_rep	CDS	16538010	16538134	.	+	2	Parent=Os09t0444100-00
Chr09	irgsp1_rep	CDS	16538582	16538716	.	+	0	Parent=Os09t0444100-00
Chr09	irgsp1_rep	mRNA	16543048	16549779	.	-	.	ID=Os09t0444200-01;Name=Os09t0444200-01;Locus_id=Os09g0444200;Note=Lecithin:cholesterol acyltransferase family protein.;Transcript_evidence=AK100079 (DDBJ%2C Best hit);ORF_evidence=F2VR35 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: O-acyltransferase activity (GO:0008374);InterPro=Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase (IPR003386);NIAS_FLcDNA=J023001J23;Expression=AK100079;TENOR=Os09t0444200-01;KEGG=Os09t0444200-01
Chr09	irgsp1_rep	five_prime_UTR	16549599	16549779	.	-	.	Parent=Os09t0444200-01
Chr09	irgsp1_rep	CDS	16549105	16549598	.	-	0	Parent=Os09t0444200-01
Chr09	irgsp1_rep	CDS	16546805	16547027	.	-	1	Parent=Os09t0444200-01
Chr09	irgsp1_rep	CDS	16546403	16546686	.	-	0	Parent=Os09t0444200-01
Chr09	irgsp1_rep	CDS	16544933	16545257	.	-	1	Parent=Os09t0444200-01
Chr09	irgsp1_rep	CDS	16544028	16544293	.	-	0	Parent=Os09t0444200-01
Chr09	irgsp1_rep	CDS	16543284	16543767	.	-	1	Parent=Os09t0444200-01
Chr09	irgsp1_rep	three_prime_UTR	16543048	16543283	.	-	.	Parent=Os09t0444200-01
Chr09	irgsp1_rep	mRNA	16543048	16548414	.	-	.	ID=Os09t0444200-02;Name=Os09t0444200-02;Locus_id=Os09g0444200;Note=Similar to predicted protein.;Transcript_evidence=AK099811 (DDBJ%2C Best hit);ORF_evidence=F2VR35 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: O-acyltransferase activity (GO:0008374);InterPro=Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase (IPR003386);NIAS_FLcDNA=J013099F09;Expression=AK099811;TENOR=Os09t0444200-02;KEGG=Os09t0444200-02
Chr09	irgsp1_rep	five_prime_UTR	16547039	16548414	.	-	.	Parent=Os09t0444200-02
Chr09	irgsp1_rep	CDS	16546805	16547038	.	-	0	Parent=Os09t0444200-02
Chr09	irgsp1_rep	CDS	16546403	16546686	.	-	0	Parent=Os09t0444200-02
Chr09	irgsp1_rep	CDS	16544935	16545257	.	-	1	Parent=Os09t0444200-02
Chr09	irgsp1_rep	CDS	16544274	16544293	.	-	2	Parent=Os09t0444200-02
Chr09	irgsp1_rep	three_prime_UTR	16544028	16544273	.	-	.	Parent=Os09t0444200-02
Chr09	irgsp1_rep	three_prime_UTR	16543048	16543767	.	-	.	Parent=Os09t0444200-02
Chr09	irgsp1_rep	mRNA	16552780	16553281	.	+	.	ID=Os09t0444500-01;Name=Os09t0444500-01;Locus_id=Os09g0444500;CGSNL Gene Symbol=BRXL5;CGSNL Gene Name=BREVIS RADIX-LIKE 5;Oryzabase Gene Symbol Synonym(s)=OsBRXL5;Oryzabase Gene Name Synonym(s)=Brevis radix-like 5;Note=Similar to Protein Brevis radix-like 1.;Transcript_evidence=AK059606 (DDBJ%2C Best hit);ORF_evidence=Q6YUB8 (UniProt);NIAS_FLcDNA=001-030-E12;Oryzabase=8932;Expression=AK059606;TENOR=Os09t0444500-01;KEGG=Os09t0444500-01
Chr09	irgsp1_rep	five_prime_UTR	16552780	16552996	.	+	.	Parent=Os09t0444500-01
Chr09	irgsp1_rep	CDS	16552997	16553233	.	+	0	Parent=Os09t0444500-01
Chr09	irgsp1_rep	three_prime_UTR	16553234	16553281	.	+	.	Parent=Os09t0444500-01
Chr09	irgsp1_rep	mRNA	16553450	16556821	.	-	.	ID=Os09t0444550-00;Name=Os09t0444550-00;Locus_id=Os09g0444550;Note=Hypothetical protein.;Transcript_evidence=BT084039 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0444550-00
Chr09	irgsp1_rep	five_prime_UTR	16556808	16556821	.	-	.	Parent=Os09t0444550-00
Chr09	irgsp1_rep	CDS	16556668	16556807	.	-	0	Parent=Os09t0444550-00
Chr09	irgsp1_rep	CDS	16553623	16553974	.	-	1	Parent=Os09t0444550-00
Chr09	irgsp1_rep	three_prime_UTR	16553450	16553622	.	-	.	Parent=Os09t0444550-00
Chr09	irgsp1_rep	mRNA	16557644	16557936	.	+	.	ID=Os09t0444600-01;Name=Os09t0444600-01;Locus_id=Os09g0444600;Note=Non-protein coding transcript.;Transcript_evidence=AK059315 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-025-H02;TENOR=Os09t0444600-01
Chr09	irgsp1_rep	exon	16557644	16557936	.	+	.	Parent=Os09t0444600-01
Chr09	irgsp1_rep	mRNA	16560106	16561750	.	-	.	ID=Os09t0444700-01;Name=Os09t0444700-01;Locus_id=Os09g0444700;Note=Similar to mitochondrial carrier-like protein.;Transcript_evidence=AK120833 (DDBJ%2C Best hit);ORF_evidence=NP_001147647.1 (RefSeq);InterPro=Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J023019P07;TENOR=Os09t0444700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	16561171	16561750	.	-	.	Parent=Os09t0444700-01
Chr09	irgsp1_rep	CDS	16560433	16561170	.	-	0	Parent=Os09t0444700-01
Chr09	irgsp1_rep	three_prime_UTR	16560106	16560432	.	-	.	Parent=Os09t0444700-01
Chr09	irgsp1_rep	mRNA	16564529	16566071	.	-	.	ID=Os09t0444800-01;Name=Os09t0444800-01;Locus_id=Os09g0444800;Note=Protein of unknown function DUF716 family protein.;Transcript_evidence=AK110839 (DDBJ%2C Best hit);ORF_evidence=NP_001147351.1 (RefSeq);InterPro=Protein of unknown function DUF716%2C TMEM45 (IPR006904);NIAS_FLcDNA=002-172-B04;Expression=AK110839;TENOR=Os09t0444800-01;KEGG=Os09t0444800-01
Chr09	irgsp1_rep	five_prime_UTR	16566005	16566071	.	-	.	Parent=Os09t0444800-01
Chr09	irgsp1_rep	CDS	16565057	16566004	.	-	0	Parent=Os09t0444800-01
Chr09	irgsp1_rep	three_prime_UTR	16564529	16565056	.	-	.	Parent=Os09t0444800-01
Chr09	irgsp1_rep	mRNA	16573502	16574893	.	-	.	ID=Os09t0444900-01;Name=Os09t0444900-01;Locus_id=Os09g0444900;Note=Similar to plant viral-response family protein.;Transcript_evidence=AK061210 (DDBJ%2C Best hit);ORF_evidence=NP_001147351.1 (RefSeq);InterPro=Protein of unknown function DUF716%2C TMEM45 (IPR006904);NIAS_FLcDNA=006-210-D03;Oryzabase=20477;TENOR=Os09t0444900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	16574893	16574893	.	-	.	Parent=Os09t0444900-01
Chr09	irgsp1_rep	CDS	16573843	16574892	.	-	0	Parent=Os09t0444900-01
Chr09	irgsp1_rep	three_prime_UTR	16573502	16573842	.	-	.	Parent=Os09t0444900-01
Chr09	irgsp1_rep	mRNA	16573722	16574890	.	-	.	ID=Os09t0444900-02;Name=Os09t0444900-02;Locus_id=Os09g0444900;Note=Similar to plant viral-response family protein.;Transcript_evidence=AK066356 (DDBJ%2C Best hit);ORF_evidence=NP_001147351.1 (RefSeq);InterPro=Protein of unknown function DUF716%2C TMEM45 (IPR006904);NIAS_FLcDNA=J013065C14;Oryzabase=20477;Expression=AK066356;TENOR=Os09t0444900-02;KEGG=Os09t0444900-02
Chr09	irgsp1_rep	five_prime_UTR	16574890	16574890	.	-	.	Parent=Os09t0444900-02
Chr09	irgsp1_rep	CDS	16574167	16574889	.	-	0	Parent=Os09t0444900-02
Chr09	irgsp1_rep	CDS	16573843	16574034	.	-	0	Parent=Os09t0444900-02
Chr09	irgsp1_rep	three_prime_UTR	16573722	16573842	.	-	.	Parent=Os09t0444900-02
Chr09	irgsp1_rep	mRNA	16580492	16580892	.	-	.	ID=Os09t0445100-00;Name=Os09t0445100-00;Locus_id=Os09g0445100;Note=Ribosomal RNA methyltransferase RrmJ/FtsJ domain containing protein.;Transcript_evidence=EU976481 (DDBJ);ORF_evidence=GeneMark;GO=Biological Process: RNA methylation (GO:0001510),Biological Process: methylation (GO:0032259),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Ribosomal RNA methyltransferase RrmJ/FtsJ (IPR002877),Ribosomal RNA large subunit methyltransferase E (IPR015507);TENOR=Os09t0445100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	16580492	16580892	.	-	0	Parent=Os09t0445100-00
Chr09	irgsp1_rep	mRNA	16610187	16611618	.	+	.	ID=Os09t0445500-01;Name=Os09t0445500-01;Locus_id=Os09g0445500;Note=Zinc finger%2C C2H2-like domain containing protein.;Transcript_evidence=AK120514 (DDBJ%2C Best hit);ORF_evidence=Q67U50 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J013124A16;Expression=AK120514;TENOR=Os09t0445500-01;KEGG=Os09t0445500-01
Chr09	irgsp1_rep	five_prime_UTR	16610187	16610314	.	+	.	Parent=Os09t0445500-01
Chr09	irgsp1_rep	CDS	16610315	16610489	.	+	0	Parent=Os09t0445500-01
Chr09	irgsp1_rep	CDS	16610559	16611274	.	+	2	Parent=Os09t0445500-01
Chr09	irgsp1_rep	three_prime_UTR	16611275	16611618	.	+	.	Parent=Os09t0445500-01
Chr09	irgsp1_rep	mRNA	16610405	16611008	.	-	.	ID=Os09t0445550-00;Name=Os09t0445550-00;Locus_id=Os09g0445550;Note=Hypothetical protein.;Transcript_evidence=EU948609 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0445550-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	16611008	16611008	.	-	.	Parent=Os09t0445550-00
Chr09	irgsp1_rep	CDS	16610564	16611007	.	-	0	Parent=Os09t0445550-00
Chr09	irgsp1_rep	three_prime_UTR	16610405	16610563	.	-	.	Parent=Os09t0445550-00
Chr09	irgsp1_rep	mRNA	16618039	16618783	.	+	.	ID=Os09t0445600-01;Name=Os09t0445600-01;Locus_id=Os09g0445600;Note=Similar to oxidoreductase/ transition metal ion binding protein.;Transcript_evidence=AK107839 (DDBJ%2C Best hit);ORF_evidence=XP_002879351.1 (RefSeq);NIAS_FLcDNA=002-133-H08;Expression=AK107839;TENOR=Os09t0445600-01;KEGG=Os09t0445600-01
Chr09	irgsp1_rep	five_prime_UTR	16618039	16618107	.	+	.	Parent=Os09t0445600-01
Chr09	irgsp1_rep	CDS	16618108	16618527	.	+	0	Parent=Os09t0445600-01
Chr09	irgsp1_rep	three_prime_UTR	16618528	16618783	.	+	.	Parent=Os09t0445600-01
Chr09	irgsp1_rep	mRNA	16622012	16623568	.	+	.	ID=Os09t0445700-00;Name=Os09t0445700-00;Locus_id=Os09g0445700;Note=ATPase%2C AAA+ type%2C core domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8BCH8 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);TENOR=Os09t0445700-00
Chr09	irgsp1_rep	CDS	16622012	16623568	.	+	0	Parent=Os09t0445700-00
Chr09	irgsp1_rep	mRNA	16627046	16627258	.	-	.	ID=Os09t0445801-00;Name=Os09t0445801-00;Locus_id=Os09g0445801;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os09t0445801-00
Chr09	irgsp1_rep	CDS	16627046	16627258	.	-	0	Parent=Os09t0445801-00
Chr09	irgsp1_rep	mRNA	16629572	16631532	.	-	.	ID=Os09t0446000-01;Name=Os09t0446000-01;Locus_id=Os09g0446000;Note=Conserved hypothetical protein.;Transcript_evidence=AK108255 (DDBJ%2C Best hit);ORF_evidence=A2Z1T3 (UniProt);NIAS_FLcDNA=002-141-A08;Expression=AK108255;TENOR=Os09t0446000-01;KEGG=Os09t0446000-01
Chr09	irgsp1_rep	five_prime_UTR	16631479	16631532	.	-	.	Parent=Os09t0446000-01
Chr09	irgsp1_rep	CDS	16631218	16631478	.	-	0	Parent=Os09t0446000-01
Chr09	irgsp1_rep	CDS	16631073	16631135	.	-	0	Parent=Os09t0446000-01
Chr09	irgsp1_rep	three_prime_UTR	16631044	16631072	.	-	.	Parent=Os09t0446000-01
Chr09	irgsp1_rep	three_prime_UTR	16629572	16629776	.	-	.	Parent=Os09t0446000-01
Chr09	irgsp1_rep	mRNA	16633305	16636532	.	+	.	ID=Os09t0446200-01;Name=Os09t0446200-01;Locus_id=Os09g0446200;Note=Gamma tubulin complex protein 3 domain containing protein.;Transcript_evidence=AK288297 (DDBJ%2C Best hit);ORF_evidence=XP_002322735.1 (RefSeq);GO=Biological Process: microtubule cytoskeleton organization (GO:0000226),Biological Process: microtubule nucleation (GO:0007020),Cellular Component: spindle pole (GO:0000922),Cellular Component: microtubule organizing center (GO:0005815),Cellular Component: cytoskeleton (GO:0005856);InterPro=Spc97/Spc98 (IPR007259),Gamma tubulin complex protein 3 (IPR015697);NIAS_FLcDNA=J090019L12;TENOR=Os09t0446200-01;KEGG=Os09t0446200-01
Chr09	irgsp1_rep	five_prime_UTR	16633305	16633329	.	+	.	Parent=Os09t0446200-01
Chr09	irgsp1_rep	CDS	16633330	16635587	.	+	0	Parent=Os09t0446200-01
Chr09	irgsp1_rep	CDS	16635678	16635945	.	+	1	Parent=Os09t0446200-01
Chr09	irgsp1_rep	three_prime_UTR	16635946	16636116	.	+	.	Parent=Os09t0446200-01
Chr09	irgsp1_rep	three_prime_UTR	16636207	16636532	.	+	.	Parent=Os09t0446200-01
Chr09	irgsp1_rep	mRNA	16639930	16640826	.	+	.	ID=Os09t0446275-00;Name=Os09t0446275-00;Locus_id=Os09g0446275;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=EU954398 (DDBJ);ORF_evidence=Q67U43 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);TENOR=Os09t0446275-00
Chr09	irgsp1_rep	CDS	16639930	16640826	.	+	0	Parent=Os09t0446275-00
Chr09	irgsp1_rep	mRNA	16648266	16649341	.	-	.	ID=Os09t0446350-01;Name=Os09t0446350-01;Locus_id=Os09g0446350;Note=Hypothetical conserved gene.;Transcript_evidence=AK243069 (DDBJ%2C Best hit);ORF_evidence=Q67U41 (UniProt);NIAS_FLcDNA=J100016M21;TENOR=Os09t0446350-01;KEGG=Os09t0446350-01
Chr09	irgsp1_rep	five_prime_UTR	16649221	16649341	.	-	.	Parent=Os09t0446350-01
Chr09	irgsp1_rep	CDS	16648822	16649220	.	-	0	Parent=Os09t0446350-01
Chr09	irgsp1_rep	three_prime_UTR	16648266	16648821	.	-	.	Parent=Os09t0446350-01
Chr09	irgsp1_rep	mRNA	16653109	16653561	.	+	.	ID=Os09t0446700-00;Name=Os09t0446700-00;Locus_id=Os09g0446700;Note=Conserved hypothetical protein.;Transcript_evidence=FP091629 (DDBJ);ORF_evidence=A3BZD1 (UniProt);TENOR=Os09t0446700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	16653109	16653112	.	+	.	Parent=Os09t0446700-00
Chr09	irgsp1_rep	CDS	16653113	16653373	.	+	0	Parent=Os09t0446700-00
Chr09	irgsp1_rep	three_prime_UTR	16653374	16653561	.	+	.	Parent=Os09t0446700-00
Chr09	irgsp1_rep	mRNA	16654816	16658620	.	+	.	ID=Os09t0446800-01;Name=Os09t0446800-01;Locus_id=Os09g0446800;Note=Similar to Formate--tetrahydrofolate ligase (EC 6.3.4.3) (Formyltetrahydrofolate synthetase) (10-formyletrahydrofolate synthetase) (FHS) (FTHFS).;Transcript_evidence=AK065164 (DDBJ%2C Best hit);ORF_evidence=NP_564571.1 (RefSeq);GO=Biological Process: folic acid-containing compound biosynthetic process (GO:0009396),Molecular Function: formate-tetrahydrofolate ligase activity (GO:0004329),Molecular Function: ATP binding (GO:0005524);InterPro=Formate-tetrahydrofolate ligase%2C FTHFS (IPR000559),Formate-tetrahydrofolate ligase%2C FTHFS%2C conserved site (IPR020628);NIAS_FLcDNA=J013002C08;Expression=AK065164;TENOR=Os09t0446800-01;KEGG=Os09t0446800-01 (EC:1.5.1.5%2C EC:3.5.4.9%2C EC:6.3.4.3)
Chr09	irgsp1_rep	five_prime_UTR	16654816	16654833	.	+	.	Parent=Os09t0446800-01
Chr09	irgsp1_rep	CDS	16654834	16655208	.	+	0	Parent=Os09t0446800-01
Chr09	irgsp1_rep	CDS	16655303	16655452	.	+	0	Parent=Os09t0446800-01
Chr09	irgsp1_rep	CDS	16656170	16657345	.	+	0	Parent=Os09t0446800-01
Chr09	irgsp1_rep	CDS	16657771	16657917	.	+	0	Parent=Os09t0446800-01
Chr09	irgsp1_rep	CDS	16658128	16658403	.	+	0	Parent=Os09t0446800-01
Chr09	irgsp1_rep	three_prime_UTR	16658404	16658620	.	+	.	Parent=Os09t0446800-01
Chr09	irgsp1_rep	mRNA	16654918	16658635	.	+	.	ID=Os09t0446800-02;Name=Os09t0446800-02;Locus_id=Os09g0446800;Note=Similar to THFS (10-FORMYLTETRAHYDROFOLATE SYNTHETASE)%3B ATP binding / formate-tetrahydrofolate ligase.;Transcript_evidence=AK061999 (DDBJ%2C Best hit);ORF_evidence=NP_564571.1 (RefSeq);GO=Biological Process: folic acid-containing compound biosynthetic process (GO:0009396),Molecular Function: formate-tetrahydrofolate ligase activity (GO:0004329),Molecular Function: ATP binding (GO:0005524);InterPro=Formate-tetrahydrofolate ligase%2C FTHFS (IPR000559),Formate-tetrahydrofolate ligase%2C FTHFS%2C conserved site (IPR020628);NIAS_FLcDNA=001-043-D02;Expression=AK061999;TENOR=Os09t0446800-02;KEGG=Os09t0446800-02 (EC:1.5.1.5%2C EC:3.5.4.9%2C EC:6.3.4.3)
Chr09	irgsp1_rep	five_prime_UTR	16654918	16655037	.	+	.	Parent=Os09t0446800-02
Chr09	irgsp1_rep	CDS	16655038	16655208	.	+	0	Parent=Os09t0446800-02
Chr09	irgsp1_rep	CDS	16655303	16655452	.	+	0	Parent=Os09t0446800-02
Chr09	irgsp1_rep	CDS	16656170	16657345	.	+	0	Parent=Os09t0446800-02
Chr09	irgsp1_rep	CDS	16657771	16657917	.	+	0	Parent=Os09t0446800-02
Chr09	irgsp1_rep	CDS	16658128	16658403	.	+	0	Parent=Os09t0446800-02
Chr09	irgsp1_rep	three_prime_UTR	16658404	16658635	.	+	.	Parent=Os09t0446800-02
Chr09	irgsp1_rep	mRNA	16675107	16675588	.	-	.	ID=Os09t0447000-00;Name=Os09t0447000-00;Locus_id=Os09g0447000;CGSNL Gene Symbol=HOX11;CGSNL Gene Name=HOMEOBOX GENE 11;Oryzabase Gene Symbol Synonym(s)=Oshox11%2C OsHox11;Oryzabase Gene Name Synonym(s)=rice homeobox gene 11%2C Homeobox-leucine zipper protein HOX11%2C Homeodomain transcription factor HOX11%2C HD-ZIP protein HOX11;Note=Homeodomain-related domain containing protein.;Transcript_evidence=AY559046 (DDBJ%2C Best hit);ORF_evidence=Q67UE2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),Leucine zipper%2C homeobox-associated (IPR003106),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Homeobox%2C conserved site (IPR017970);Oryzabase=8447;Expression=AY559046;TENOR=Os09t0447000-00;KEGG=Os09t0447000-00
Chr09	irgsp1_rep	five_prime_UTR	16675587	16675588	.	-	.	Parent=Os09t0447000-00
Chr09	irgsp1_rep	CDS	16675524	16675586	.	-	0	Parent=Os09t0447000-00
Chr09	irgsp1_rep	CDS	16675337	16675416	.	-	0	Parent=Os09t0447000-00
Chr09	irgsp1_rep	CDS	16675107	16675233	.	-	1	Parent=Os09t0447000-00
Chr09	irgsp1_rep	mRNA	16711022	16713794	.	-	.	ID=Os09t0447300-01;Name=Os09t0447300-01;Locus_id=Os09g0447300;CGSNL Gene Symbol=CYP76L1;CGSNL Gene Name=P-450 76L1;Oryzabase Gene Symbol Synonym(s)=CYP76L1;Oryzabase Gene Name Synonym(s)=CytoChrome P450 76L1;Note=CytoChrome P450 family protein.;Transcript_evidence=AK243435 (DDBJ%2C Best hit);ORF_evidence=A2Z1U3 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J100068A12;Oryzabase=12427;TENOR=Os09t0447300-01;KEGG=Os09t0447300-01
Chr09	irgsp1_rep	five_prime_UTR	16713758	16713794	.	-	.	Parent=Os09t0447300-01
Chr09	irgsp1_rep	CDS	16712849	16713757	.	-	0	Parent=Os09t0447300-01
Chr09	irgsp1_rep	CDS	16711271	16711894	.	-	0	Parent=Os09t0447300-01
Chr09	irgsp1_rep	three_prime_UTR	16711022	16711270	.	-	.	Parent=Os09t0447300-01
Chr09	irgsp1_rep	mRNA	16718633	16720923	.	-	.	ID=Os09t0447500-01;Name=Os09t0447500-01;Locus_id=Os09g0447500;Note=CytoChrome P450 family protein.;Transcript_evidence=AK110565 (DDBJ%2C Best hit);ORF_evidence=A2Z1U4 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=002-168-D04;Expression=AK110565;TENOR=Os09t0447500-01;KEGG=Os09t0447500-01
Chr09	irgsp1_rep	five_prime_UTR	16720914	16720923	.	-	.	Parent=Os09t0447500-01
Chr09	irgsp1_rep	CDS	16720020	16720913	.	-	0	Parent=Os09t0447500-01
Chr09	irgsp1_rep	CDS	16718967	16719590	.	-	0	Parent=Os09t0447500-01
Chr09	irgsp1_rep	three_prime_UTR	16718633	16718966	.	-	.	Parent=Os09t0447500-01
Chr09	irgsp1_rep	mRNA	16728178	16729625	.	-	.	ID=Os09t0447600-00;Name=Os09t0447600-00;Locus_id=Os09g0447600;Note=F-box associated type 1 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3BZE2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);TENOR=Os09t0447600-00;KEGG=Os09t0447600-00
Chr09	irgsp1_rep	CDS	16728906	16729625	.	-	0	Parent=Os09t0447600-00
Chr09	irgsp1_rep	CDS	16728574	16728671	.	-	0	Parent=Os09t0447600-00
Chr09	irgsp1_rep	CDS	16728178	16728259	.	-	1	Parent=Os09t0447600-00
Chr09	irgsp1_rep	mRNA	16741960	16743660	.	-	.	ID=Os09t0447900-01;Name=Os09t0447900-01;Locus_id=Os09g0447900;Note=Conserved hypothetical protein.;Transcript_evidence=AK111436 (DDBJ%2C Best hit);ORF_evidence=B9G3X5 (UniProt);NIAS_FLcDNA=002-183-A02;Expression=AK111436;TENOR=Os09t0447900-01;KEGG=Os09t0447900-01
Chr09	irgsp1_rep	five_prime_UTR	16743506	16743660	.	-	.	Parent=Os09t0447900-01
Chr09	irgsp1_rep	CDS	16742774	16743505	.	-	0	Parent=Os09t0447900-01
Chr09	irgsp1_rep	three_prime_UTR	16742297	16742773	.	-	.	Parent=Os09t0447900-01
Chr09	irgsp1_rep	three_prime_UTR	16741960	16742172	.	-	.	Parent=Os09t0447900-01
Chr09	irgsp1_rep	mRNA	16744918	16745962	.	-	.	ID=Os09t0448001-00;Name=Os09t0448001-00;Locus_id=Os09g0448001;Note=Non-protein coding transcript.;Transcript_evidence=BT086888 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0448001-00
Chr09	irgsp1_rep	exon	16745843	16745962	.	-	.	Parent=Os09t0448001-00
Chr09	irgsp1_rep	exon	16744918	16745073	.	-	.	Parent=Os09t0448001-00
Chr09	irgsp1_rep	mRNA	16748247	16751284	.	-	.	ID=Os09t0448100-01;Name=Os09t0448100-01;Locus_id=Os09g0448100;Oryzabase Gene Symbol Synonym(s)=OsFbox489%2C Os_F0053;Oryzabase Gene Name Synonym(s)=F-box protein 489;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK070293 (DDBJ%2C Best hit);ORF_evidence=Q2QXA1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated domain%2C type 1 (IPR006527),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023050H06;Oryzabase=17259;Expression=AK070293;TENOR=Os09t0448100-01;KEGG=Os09t0448100-01
Chr09	irgsp1_rep	five_prime_UTR	16751091	16751284	.	-	.	Parent=Os09t0448100-01
Chr09	irgsp1_rep	CDS	16751000	16751090	.	-	0	Parent=Os09t0448100-01
Chr09	irgsp1_rep	CDS	16749366	16750573	.	-	2	Parent=Os09t0448100-01
Chr09	irgsp1_rep	three_prime_UTR	16748247	16749365	.	-	.	Parent=Os09t0448100-01
Chr09	irgsp1_rep	mRNA	16749161	16751233	.	-	.	ID=Os09t0448100-02;Name=Os09t0448100-02;Locus_id=Os09g0448100;Oryzabase Gene Symbol Synonym(s)=OsFbox489%2C Os_F0053;Oryzabase Gene Name Synonym(s)=F-box protein 489;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK070628 (DDBJ%2C Best hit);ORF_evidence=Q2QXA1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated domain%2C type 1 (IPR006527),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023058F05;Oryzabase=17259;Expression=AK070628;TENOR=Os09t0448100-02;KEGG=Os09t0448100-02
Chr09	irgsp1_rep	five_prime_UTR	16751091	16751233	.	-	.	Parent=Os09t0448100-02
Chr09	irgsp1_rep	CDS	16751000	16751090	.	-	0	Parent=Os09t0448100-02
Chr09	irgsp1_rep	CDS	16749366	16750573	.	-	2	Parent=Os09t0448100-02
Chr09	irgsp1_rep	three_prime_UTR	16749161	16749365	.	-	.	Parent=Os09t0448100-02
Chr09	irgsp1_rep	mRNA	16751801	16752261	.	-	.	ID=Os09t0448150-00;Name=Os09t0448150-00;Locus_id=Os09g0448150;Note=Similar to Carboxyl-terminal proteinase.;Transcript_evidence=ab initio prediction;ORF_evidence=B6SXW9 (UniProt);TENOR=Os09t0448150-00
Chr09	irgsp1_rep	CDS	16752094	16752261	.	-	0	Parent=Os09t0448150-00
Chr09	irgsp1_rep	CDS	16751801	16751890	.	-	0	Parent=Os09t0448150-00
Chr09	irgsp1_rep	mRNA	16754535	16759566	.	+	.	ID=Os09t0448200-01;Name=Os09t0448200-01;Locus_id=Os09g0448200;CGSNL Gene Symbol=HAK17;CGSNL Gene Name=HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 17;Oryzabase Gene Symbol Synonym(s)=OsHAK17%2C FCO3%2C FCO4;Oryzabase Gene Name Synonym(s)=High-affinity Potassium(K+) Transporter 17%2C Probable potassium transporter 17%2C Functioning in Cesium Over-transport 3%2C Functioning in Cesium Over-transport 4;Note=Similar to High-affinity potassium transporter.;Transcript_evidence=AK068574 (DDBJ%2C Best hit);ORF_evidence=Q1T762 (UniProt);GO=Biological Process: potassium ion transmembrane transport (GO:0071805),Cellular Component: membrane (GO:0016020),Molecular Function: potassium ion transmembrane transporter activity (GO:0015079);InterPro=K+ potassium transporter (IPR003855);NIAS_FLcDNA=J013155A20;Oryzabase=8671;TENOR=Os09t0448200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	16754535	16754861	.	+	.	Parent=Os09t0448200-01
Chr09	irgsp1_rep	CDS	16754862	16754963	.	+	0	Parent=Os09t0448200-01
Chr09	irgsp1_rep	CDS	16756407	16756629	.	+	0	Parent=Os09t0448200-01
Chr09	irgsp1_rep	CDS	16757139	16757381	.	+	2	Parent=Os09t0448200-01
Chr09	irgsp1_rep	CDS	16757466	16757516	.	+	2	Parent=Os09t0448200-01
Chr09	irgsp1_rep	CDS	16757616	16757876	.	+	2	Parent=Os09t0448200-01
Chr09	irgsp1_rep	CDS	16757970	16758022	.	+	2	Parent=Os09t0448200-01
Chr09	irgsp1_rep	CDS	16758097	16758466	.	+	0	Parent=Os09t0448200-01
Chr09	irgsp1_rep	CDS	16758557	16759401	.	+	2	Parent=Os09t0448200-01
Chr09	irgsp1_rep	three_prime_UTR	16759402	16759566	.	+	.	Parent=Os09t0448200-01
Chr09	irgsp1_rep	mRNA	16756327	16759622	.	+	.	ID=Os09t0448200-02;Name=Os09t0448200-02;Locus_id=Os09g0448200;CGSNL Gene Symbol=HAK17;CGSNL Gene Name=HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 17;Oryzabase Gene Symbol Synonym(s)=OsHAK17%2C FCO3%2C FCO4;Oryzabase Gene Name Synonym(s)=High-affinity Potassium(K+) Transporter 17%2C Probable potassium transporter 17%2C Functioning in Cesium Over-transport 3%2C Functioning in Cesium Over-transport 4;Note=Similar to High-affinity potassium transporter.;Transcript_evidence=AK066194 (DDBJ%2C Best hit);ORF_evidence=Q1T762 (UniProt);GO=Biological Process: potassium ion transmembrane transport (GO:0071805),Cellular Component: membrane (GO:0016020),Molecular Function: potassium ion transmembrane transporter activity (GO:0015079);InterPro=K+ potassium transporter (IPR003855);NIAS_FLcDNA=J013055M19;Oryzabase=8671;Expression=AK066194;TENOR=Os09t0448200-02;KEGG=Os09t0448200-02
Chr09	irgsp1_rep	five_prime_UTR	16756327	16756382	.	+	.	Parent=Os09t0448200-02
Chr09	irgsp1_rep	CDS	16756383	16756629	.	+	0	Parent=Os09t0448200-02
Chr09	irgsp1_rep	CDS	16757139	16757381	.	+	2	Parent=Os09t0448200-02
Chr09	irgsp1_rep	CDS	16757466	16757516	.	+	2	Parent=Os09t0448200-02
Chr09	irgsp1_rep	CDS	16757616	16757876	.	+	2	Parent=Os09t0448200-02
Chr09	irgsp1_rep	CDS	16757970	16758022	.	+	2	Parent=Os09t0448200-02
Chr09	irgsp1_rep	CDS	16758097	16758466	.	+	0	Parent=Os09t0448200-02
Chr09	irgsp1_rep	CDS	16758557	16759401	.	+	2	Parent=Os09t0448200-02
Chr09	irgsp1_rep	three_prime_UTR	16759402	16759622	.	+	.	Parent=Os09t0448200-02
Chr09	irgsp1_rep	mRNA	16765919	16767767	.	+	.	ID=Os09t0448500-01;Name=Os09t0448500-01;Locus_id=Os09g0448500;RAP-DB Gene Symbol Synonym(s)=GS9;RAP-DB Gene Name Synonym(s)=Grain Shape Gene on Chromosome 9;CGSNL Gene Symbol=GS9;CGSNL Gene Name=GRAIN SHAPE GENE ON CHROMOSOME 9;Oryzabase Gene Name Synonym(s)=Grain Shape Gene on Chromosome 9%2C Grain Shape 9;Note=Transcriptional activator%2C Regulation of grain shape;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;Manual Curation=March 30%2C 2018;Literature_PMID=29588443;Oryzabase=22401;TENOR=Os09t0448500-00;Subcellular location=nucleus (GO:0005634)
Chr09	irgsp1_rep	five_prime_UTR	16765919	16765986	.	+	.	Parent=Os09t0448500-01
Chr09	irgsp1_rep	CDS	16765987	16766227	.	+	0	Parent=Os09t0448500-01
Chr09	irgsp1_rep	CDS	16766309	16766382	.	+	2	Parent=Os09t0448500-01
Chr09	irgsp1_rep	CDS	16766469	16766607	.	+	0	Parent=Os09t0448500-01
Chr09	irgsp1_rep	CDS	16767184	16767767	.	+	2	Parent=Os09t0448500-01
Chr09	irgsp1_rep	mRNA	16781075	16784815	.	+	.	ID=Os09t0448900-01;Name=Os09t0448900-01;Locus_id=Os09g0448900;Note=Conserved hypothetical protein.;Transcript_evidence=AK109793 (DDBJ%2C Best hit);ORF_evidence=B9G3X8 (UniProt);NIAS_FLcDNA=002-147-D12;TENOR=Os09t0448900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	16781075	16781151	.	+	.	Parent=Os09t0448900-01
Chr09	irgsp1_rep	CDS	16781152	16781401	.	+	0	Parent=Os09t0448900-01
Chr09	irgsp1_rep	CDS	16781494	16781581	.	+	2	Parent=Os09t0448900-01
Chr09	irgsp1_rep	CDS	16782241	16782390	.	+	1	Parent=Os09t0448900-01
Chr09	irgsp1_rep	CDS	16782535	16782666	.	+	1	Parent=Os09t0448900-01
Chr09	irgsp1_rep	CDS	16782970	16783057	.	+	1	Parent=Os09t0448900-01
Chr09	irgsp1_rep	three_prime_UTR	16783058	16783074	.	+	.	Parent=Os09t0448900-01
Chr09	irgsp1_rep	three_prime_UTR	16783165	16783363	.	+	.	Parent=Os09t0448900-01
Chr09	irgsp1_rep	three_prime_UTR	16783586	16783645	.	+	.	Parent=Os09t0448900-01
Chr09	irgsp1_rep	three_prime_UTR	16783771	16783835	.	+	.	Parent=Os09t0448900-01
Chr09	irgsp1_rep	three_prime_UTR	16784170	16784260	.	+	.	Parent=Os09t0448900-01
Chr09	irgsp1_rep	three_prime_UTR	16784340	16784815	.	+	.	Parent=Os09t0448900-01
Chr09	irgsp1_rep	mRNA	16785995	16788401	.	+	.	ID=Os09t0449000-01;Name=Os09t0449000-01;Locus_id=Os09g0449000;RAP-DB Gene Symbol Synonym(s)=OsMS1%2C PTC1;RAP-DB Gene Name Synonym(s)=MALE STERILITY1%2C PERSISTENT TAPETAL CELL1;CGSNL Gene Symbol=PTC1;CGSNL Gene Name=PERSISTENT TAPETAL CELL 1;Oryzabase Gene Symbol Synonym(s)=OsMS1%2C tms9-1%2C OsPTC1%2C MS1%2C TMS9-1;Oryzabase Gene Name Synonym(s)=PERSISTENT TAPETAL CELL1%2C MALE STERILITY1 homolog%2C thermo-sensitive genic male sterility 9-1%2C MALE STERILITY 1;Note=PHD (plant homeodomain)-finger protein%2C Transcriptional activator%2C Regulation of tapetal programmed cell death (PCD) and pollen exine formation;Transcript_evidence=AK288120 (truncated),GU597363 (9522);ORF_evidence=Q67V61;InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C PHD-type (IPR001965),Endoribonuclease YbeY%2C conserved site (IPR020549),Zinc finger%2C PHD-type%2C conserved site (IPR019786);NIAS_FLcDNA=J080052O18 (truncated);Manual Curation=August 20%2C 2020;Literature_PMID=30610522,21515697;Oryzabase=9248;TENOR=Os09t0449000-01;KEGG=Os09t0449000-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=nucleus (GO:0005634)
Chr09	irgsp1_rep	five_prime_UTR	16785995	16786040	.	+	.	Parent=Os09t0449000-01
Chr09	irgsp1_rep	CDS	16786041	16786350	.	+	0	Parent=Os09t0449000-01
Chr09	irgsp1_rep	CDS	16786425	16786731	.	+	2	Parent=Os09t0449000-01
Chr09	irgsp1_rep	CDS	16786833	16788255	.	+	1	Parent=Os09t0449000-01
Chr09	irgsp1_rep	three_prime_UTR	16788256	16788401	.	+	.	Parent=Os09t0449000-01
Chr09	irgsp1_rep	mRNA	16822425	16825383	.	+	.	ID=Os09t0449400-01;Name=Os09t0449400-01;Locus_id=Os09g0449400;CGSNL Gene Symbol=IDD13;CGSNL Gene Name=INDETERMINATE DOMAIN 13;Oryzabase Gene Symbol Synonym(s)=OsIDD13;Oryzabase Gene Name Synonym(s)=indeterminate domain 13;Note=Hypothetical conserved gene.;Transcript_evidence=AK288964 (DDBJ%2C Best hit);ORF_evidence=Q67V55 (UniProt);NIAS_FLcDNA=J090084I18;Manual Curation=August 27%2C 2020;Oryzabase=13160;TENOR=Os09t0449400-01;KEGG=Os09t0449400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	16822425	16823045	.	+	.	Parent=Os09t0449400-01
Chr09	irgsp1_rep	CDS	16823046	16823341	.	+	0	Parent=Os09t0449400-01
Chr09	irgsp1_rep	CDS	16824040	16825012	.	+	1	Parent=Os09t0449400-01
Chr09	irgsp1_rep	three_prime_UTR	16825013	16825383	.	+	.	Parent=Os09t0449400-01
Chr09	irgsp1_rep	mRNA	16822125	16825401	.	+	.	ID=Os09t0449400-02;Name=Os09t0449400-02;Locus_id=Os09g0449400;RAP-DB Gene Symbol Synonym(s)=IDD13;RAP-DB Gene Name Synonym(s)=indeterminate domain 13;CGSNL Gene Symbol=IDD13;CGSNL Gene Name=INDETERMINATE DOMAIN 13;Oryzabase Gene Symbol Synonym(s)=OsIDD13;Oryzabase Gene Name Synonym(s)=indeterminate domain 13;Note=Indeterminate domain (IDD) protein%2C Regulation of defense to sheath blight disease;Transcript_evidence=XM_015755352;ORF_evidence=A3BZE8;GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Zinc finger C2H2 superfamily (IPR036236),Zinc finger C2H2-type (IPR013087);Manual Curation=August 27%2C 2020;Literature_PMID=32140886;Oryzabase=13160;Subcellular location=nucleus (GO:0005634)
Chr09	irgsp1_rep	five_prime_UTR	16822125	16822575	.	+	.	Parent=Os09t0449400-02
Chr09	irgsp1_rep	CDS	16822576	16822714	.	+	0	Parent=Os09t0449400-02
Chr09	irgsp1_rep	CDS	16822939	16823341	.	+	2	Parent=Os09t0449400-02
Chr09	irgsp1_rep	CDS	16824040	16825012	.	+	1	Parent=Os09t0449400-02
Chr09	irgsp1_rep	three_prime_UTR	16825013	16825401	.	+	.	Parent=Os09t0449400-02
Chr09	irgsp1_rep	mRNA	16828922	16830473	.	+	.	ID=Os09t0449500-01;Name=Os09t0449500-01;Locus_id=Os09g0449500;Note=Similar to Clathrin assembly protein.;Transcript_evidence=AK111342 (DDBJ%2C Best hit);ORF_evidence=B6U2P8 (UniProt);NIAS_FLcDNA=002-181-F09;TENOR=Os09t0449500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	16828922	16829006	.	+	.	Parent=Os09t0449500-01
Chr09	irgsp1_rep	five_prime_UTR	16829270	16829408	.	+	.	Parent=Os09t0449500-01
Chr09	irgsp1_rep	CDS	16829409	16829894	.	+	0	Parent=Os09t0449500-01
Chr09	irgsp1_rep	three_prime_UTR	16829895	16830473	.	+	.	Parent=Os09t0449500-01
Chr09	irgsp1_rep	mRNA	16834551	16837303	.	+	.	ID=Os09t0449600-01;Name=Os09t0449600-01;Locus_id=Os09g0449600;Oryzabase Gene Symbol Synonym(s)=OsFbox490%2C Os_F0091;Oryzabase Gene Name Synonym(s)=F-box protein 490;Note=Similar to F-box protein interaction domain containing protein%2C expressed.;Transcript_evidence=AK066120 (DDBJ%2C Best hit);ORF_evidence=A3BZE2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated domain%2C type 1 (IPR006527),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013055H16;Oryzabase=17260;TENOR=Os09t0449600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	16834551	16834801	.	+	.	Parent=Os09t0449600-01
Chr09	irgsp1_rep	five_prime_UTR	16835245	16835261	.	+	.	Parent=Os09t0449600-01
Chr09	irgsp1_rep	CDS	16835262	16836479	.	+	0	Parent=Os09t0449600-01
Chr09	irgsp1_rep	three_prime_UTR	16836480	16836503	.	+	.	Parent=Os09t0449600-01
Chr09	irgsp1_rep	three_prime_UTR	16836691	16836721	.	+	.	Parent=Os09t0449600-01
Chr09	irgsp1_rep	three_prime_UTR	16836823	16836892	.	+	.	Parent=Os09t0449600-01
Chr09	irgsp1_rep	three_prime_UTR	16837067	16837303	.	+	.	Parent=Os09t0449600-01
Chr09	irgsp1_rep	mRNA	16834610	16838598	.	+	.	ID=Os09t0449600-02;Name=Os09t0449600-02;Locus_id=Os09g0449600;Oryzabase Gene Symbol Synonym(s)=OsFbox490%2C Os_F0091;Oryzabase Gene Name Synonym(s)=F-box protein 490;Note=Similar to F-box protein interaction domain containing protein%2C expressed.;Transcript_evidence=AK065937 (DDBJ%2C Best hit);ORF_evidence=A3BZE2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated domain%2C type 1 (IPR006527),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013043E22;Oryzabase=17260;Expression=AK065937;TENOR=Os09t0449600-02;KEGG=Os09t0449600-02
Chr09	irgsp1_rep	five_prime_UTR	16834610	16834801	.	+	.	Parent=Os09t0449600-02
Chr09	irgsp1_rep	five_prime_UTR	16835245	16835261	.	+	.	Parent=Os09t0449600-02
Chr09	irgsp1_rep	CDS	16835262	16836479	.	+	0	Parent=Os09t0449600-02
Chr09	irgsp1_rep	three_prime_UTR	16836480	16836503	.	+	.	Parent=Os09t0449600-02
Chr09	irgsp1_rep	three_prime_UTR	16836691	16836721	.	+	.	Parent=Os09t0449600-02
Chr09	irgsp1_rep	three_prime_UTR	16836823	16838598	.	+	.	Parent=Os09t0449600-02
Chr09	irgsp1_rep	mRNA	16840213	16840956	.	-	.	ID=Os09t0449650-00;Name=Os09t0449650-00;Locus_id=Os09g0449650;Note=Conserved hypothetical protein.;Transcript_evidence=AK072939 (DDBJ%2C Secondary hit);ORF_evidence=NP_001175867.1 (RefSeq);Expression=AK072939;TENOR=Os09t0449650-00;KEGG=Os09t0449650-00
Chr09	irgsp1_rep	five_prime_UTR	16840737	16840956	.	-	.	Parent=Os09t0449650-00
Chr09	irgsp1_rep	CDS	16840500	16840736	.	-	0	Parent=Os09t0449650-00
Chr09	irgsp1_rep	three_prime_UTR	16840213	16840499	.	-	.	Parent=Os09t0449650-00
Chr09	irgsp1_rep	mRNA	16842322	16843953	.	+	.	ID=Os09t0449700-01;Name=Os09t0449700-01;Locus_id=Os09g0449700;Note=Hypothetical gene.;Transcript_evidence=AK061241 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=006-211-C10;Expression=AK061241;TENOR=Os09t0449700-01;KEGG=Os09t0449700-01
Chr09	irgsp1_rep	five_prime_UTR	16842322	16842498	.	+	.	Parent=Os09t0449700-01
Chr09	irgsp1_rep	CDS	16842499	16842717	.	+	0	Parent=Os09t0449700-01
Chr09	irgsp1_rep	three_prime_UTR	16842718	16843953	.	+	.	Parent=Os09t0449700-01
Chr09	irgsp1_rep	mRNA	16847790	16848632	.	+	.	ID=Os09t0449800-01;Name=Os09t0449800-01;Locus_id=Os09g0449800;Note=Conserved hypothetical protein.;Transcript_evidence=AK059044 (DDBJ%2C Best hit);ORF_evidence=B8BCI6 (UniProt);NIAS_FLcDNA=001-021-D07;TENOR=Os09t0449800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	16847790	16848135	.	+	.	Parent=Os09t0449800-01
Chr09	irgsp1_rep	CDS	16848136	16848465	.	+	0	Parent=Os09t0449800-01
Chr09	irgsp1_rep	three_prime_UTR	16848466	16848632	.	+	.	Parent=Os09t0449800-01
Chr09	irgsp1_rep	mRNA	16852288	16854658	.	+	.	ID=Os09t0450200-01;Name=Os09t0450200-01;Locus_id=Os09g0450200;Note=Conserved hypothetical protein.;Transcript_evidence=AK068872 (DDBJ%2C Best hit);ORF_evidence=A2Z1W0 (UniProt);NIAS_FLcDNA=J013170L13;Expression=AK068872;TENOR=Os09t0450200-01;KEGG=Os09t0450200-01
Chr09	irgsp1_rep	five_prime_UTR	16852288	16852520	.	+	.	Parent=Os09t0450200-01
Chr09	irgsp1_rep	CDS	16852521	16852560	.	+	0	Parent=Os09t0450200-01
Chr09	irgsp1_rep	CDS	16852675	16852742	.	+	2	Parent=Os09t0450200-01
Chr09	irgsp1_rep	CDS	16852830	16852990	.	+	0	Parent=Os09t0450200-01
Chr09	irgsp1_rep	CDS	16853064	16853145	.	+	1	Parent=Os09t0450200-01
Chr09	irgsp1_rep	CDS	16853578	16853670	.	+	0	Parent=Os09t0450200-01
Chr09	irgsp1_rep	three_prime_UTR	16853671	16853698	.	+	.	Parent=Os09t0450200-01
Chr09	irgsp1_rep	three_prime_UTR	16854179	16854658	.	+	.	Parent=Os09t0450200-01
Chr09	irgsp1_rep	mRNA	16855353	16861064	.	-	.	ID=Os09t0450300-01;Name=Os09t0450300-01;Locus_id=Os09g0450300;Note=MAP65/ASE1 family protein.;Transcript_evidence=AK072467 (DDBJ%2C Best hit);ORF_evidence=XP_002875099.1 (RefSeq);InterPro=Microtubule-associated protein%2C MAP65/ASE1-type (IPR007145);NIAS_FLcDNA=J023121L11;Expression=AK072467;TENOR=Os09t0450300-01;KEGG=Os09t0450300-01
Chr09	irgsp1_rep	five_prime_UTR	16860510	16861064	.	-	.	Parent=Os09t0450300-01
Chr09	irgsp1_rep	CDS	16860441	16860509	.	-	0	Parent=Os09t0450300-01
Chr09	irgsp1_rep	CDS	16859389	16859592	.	-	0	Parent=Os09t0450300-01
Chr09	irgsp1_rep	CDS	16858138	16858395	.	-	0	Parent=Os09t0450300-01
Chr09	irgsp1_rep	CDS	16857564	16857779	.	-	0	Parent=Os09t0450300-01
Chr09	irgsp1_rep	CDS	16857325	16857480	.	-	0	Parent=Os09t0450300-01
Chr09	irgsp1_rep	CDS	16857074	16857233	.	-	0	Parent=Os09t0450300-01
Chr09	irgsp1_rep	CDS	16856836	16856987	.	-	2	Parent=Os09t0450300-01
Chr09	irgsp1_rep	CDS	16856623	16856710	.	-	0	Parent=Os09t0450300-01
Chr09	irgsp1_rep	CDS	16856409	16856482	.	-	2	Parent=Os09t0450300-01
Chr09	irgsp1_rep	CDS	16856256	16856330	.	-	0	Parent=Os09t0450300-01
Chr09	irgsp1_rep	CDS	16855840	16856175	.	-	0	Parent=Os09t0450300-01
Chr09	irgsp1_rep	three_prime_UTR	16855823	16855839	.	-	.	Parent=Os09t0450300-01
Chr09	irgsp1_rep	three_prime_UTR	16855353	16855672	.	-	.	Parent=Os09t0450300-01
Chr09	irgsp1_rep	mRNA	16855375	16860960	.	-	.	ID=Os09t0450300-02;Name=Os09t0450300-02;Locus_id=Os09g0450300;Note=MAP65/ASE1 family protein.;Transcript_evidence=AK067681 (DDBJ%2C Best hit);ORF_evidence=XP_002875099.1 (RefSeq);InterPro=Microtubule-associated protein%2C MAP65/ASE1-type (IPR007145);NIAS_FLcDNA=J013116E09;Expression=AK067681;TENOR=Os09t0450300-02;KEGG=Os09t0450300-02
Chr09	irgsp1_rep	five_prime_UTR	16860510	16860960	.	-	.	Parent=Os09t0450300-02
Chr09	irgsp1_rep	CDS	16860441	16860509	.	-	0	Parent=Os09t0450300-02
Chr09	irgsp1_rep	CDS	16859389	16859592	.	-	0	Parent=Os09t0450300-02
Chr09	irgsp1_rep	CDS	16858138	16858395	.	-	0	Parent=Os09t0450300-02
Chr09	irgsp1_rep	CDS	16857564	16857779	.	-	0	Parent=Os09t0450300-02
Chr09	irgsp1_rep	CDS	16857325	16857480	.	-	0	Parent=Os09t0450300-02
Chr09	irgsp1_rep	CDS	16857074	16857233	.	-	0	Parent=Os09t0450300-02
Chr09	irgsp1_rep	CDS	16856836	16856987	.	-	2	Parent=Os09t0450300-02
Chr09	irgsp1_rep	CDS	16856623	16856710	.	-	0	Parent=Os09t0450300-02
Chr09	irgsp1_rep	CDS	16856409	16856482	.	-	2	Parent=Os09t0450300-02
Chr09	irgsp1_rep	CDS	16856256	16856330	.	-	0	Parent=Os09t0450300-02
Chr09	irgsp1_rep	CDS	16855840	16856175	.	-	0	Parent=Os09t0450300-02
Chr09	irgsp1_rep	three_prime_UTR	16855823	16855839	.	-	.	Parent=Os09t0450300-02
Chr09	irgsp1_rep	three_prime_UTR	16855375	16855672	.	-	.	Parent=Os09t0450300-02
Chr09	irgsp1_rep	mRNA	16855394	16860772	.	-	.	ID=Os09t0450300-03;Name=Os09t0450300-03;Locus_id=Os09g0450300;Note=Microtubule-associated protein MAP65-1a.;Transcript_evidence=AK068826 (DDBJ%2C Best hit);ORF_evidence=XP_002875099.1 (RefSeq);InterPro=Microtubule-associated protein%2C MAP65/ASE1-type (IPR007145);NIAS_FLcDNA=J013164I23;Expression=AK068826;TENOR=Os09t0450300-03;KEGG=Os09t0450300-03
Chr09	irgsp1_rep	five_prime_UTR	16860510	16860772	.	-	.	Parent=Os09t0450300-03
Chr09	irgsp1_rep	CDS	16860441	16860509	.	-	0	Parent=Os09t0450300-03
Chr09	irgsp1_rep	CDS	16859389	16859592	.	-	0	Parent=Os09t0450300-03
Chr09	irgsp1_rep	CDS	16858138	16858395	.	-	0	Parent=Os09t0450300-03
Chr09	irgsp1_rep	CDS	16857564	16857779	.	-	0	Parent=Os09t0450300-03
Chr09	irgsp1_rep	CDS	16857325	16857480	.	-	0	Parent=Os09t0450300-03
Chr09	irgsp1_rep	CDS	16857012	16857233	.	-	0	Parent=Os09t0450300-03
Chr09	irgsp1_rep	three_prime_UTR	16856836	16857011	.	-	.	Parent=Os09t0450300-03
Chr09	irgsp1_rep	three_prime_UTR	16856623	16856710	.	-	.	Parent=Os09t0450300-03
Chr09	irgsp1_rep	three_prime_UTR	16856409	16856482	.	-	.	Parent=Os09t0450300-03
Chr09	irgsp1_rep	three_prime_UTR	16856256	16856330	.	-	.	Parent=Os09t0450300-03
Chr09	irgsp1_rep	three_prime_UTR	16855823	16856175	.	-	.	Parent=Os09t0450300-03
Chr09	irgsp1_rep	three_prime_UTR	16855394	16855672	.	-	.	Parent=Os09t0450300-03
Chr09	irgsp1_rep	mRNA	16875034	16876024	.	+	.	ID=Os09t0450600-00;Name=Os09t0450600-00;Locus_id=Os09g0450600;Note=Similar to Protein HVA22.;Transcript_evidence=EU952775 (DDBJ);ORF_evidence=Q07764 (UniProt);InterPro=TB2/DP1/HVA22-related protein (IPR004345);TENOR=Os09t0450600-00;KEGG=Os09t0450600-00
Chr09	irgsp1_rep	five_prime_UTR	16875034	16875242	.	+	.	Parent=Os09t0450600-00
Chr09	irgsp1_rep	CDS	16875243	16875293	.	+	0	Parent=Os09t0450600-00
Chr09	irgsp1_rep	CDS	16875496	16875644	.	+	0	Parent=Os09t0450600-00
Chr09	irgsp1_rep	CDS	16875733	16876024	.	+	1	Parent=Os09t0450600-00
Chr09	irgsp1_rep	mRNA	16879407	16880409	.	-	.	ID=Os09t0450700-01;Name=Os09t0450700-01;Locus_id=Os09g0450700;Note=Conserved hypothetical protein.;Transcript_evidence=AK067088 (DDBJ%2C Best hit);ORF_evidence=B9F599 (UniProt);NIAS_FLcDNA=J013094N24;TENOR=Os09t0450700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	16879957	16880409	.	-	.	Parent=Os09t0450700-01
Chr09	irgsp1_rep	CDS	16879915	16879956	.	-	0	Parent=Os09t0450700-01
Chr09	irgsp1_rep	CDS	16879588	16879824	.	-	0	Parent=Os09t0450700-01
Chr09	irgsp1_rep	three_prime_UTR	16879407	16879587	.	-	.	Parent=Os09t0450700-01
Chr09	irgsp1_rep	mRNA	16886142	16887605	.	-	.	ID=Os09t0451000-01;Name=Os09t0451000-01;Locus_id=Os09g0451000;RAP-DB Gene Symbol Synonym(s)=ACO1%2C OsACO1%2C ACO;RAP-DB Gene Name Synonym(s)=AMINOCYCLOPROPANE-1-CARBOXYLIC ACID OXIDASE 1%2C ACC oxidase 1%2C ACC oxidase;CGSNL Gene Symbol=ACO2;CGSNL Gene Name=AMINOCYCLOPROPANE-1-CARBOXYLIC ACID OXIDASE 2;Oryzabase Gene Symbol Synonym(s)=OsACO2;Oryzabase Gene Name Synonym(s)=ACC oxidase 2;Note=ACC oxidase%2C Ethylene biosynthesis;Transcript_evidence=AK065039,AK104933;ORF_evidence=Q67UG1;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Isopenicillin N synthase-like (IPR027443),Non-haem dioxygenase N-terminal domain (IPR026992),Oxoglutarate/iron-dependent dioxygenase (IPR005123);NIAS_FLcDNA=001-047-C08, J013001H16;Manual Curation=November 24%2C 2009;Literature_PMID=17012402;Oryzabase=9072;Expression=AK104933;TENOR=Os09t0451000-01;KEGG=Os09t0451000-01 (EC:1.14.17.4)
Chr09	irgsp1_rep	five_prime_UTR	16887547	16887605	.	-	.	Parent=Os09t0451000-01
Chr09	irgsp1_rep	CDS	16887433	16887546	.	-	0	Parent=Os09t0451000-01
Chr09	irgsp1_rep	CDS	16886440	16887294	.	-	0	Parent=Os09t0451000-01
Chr09	irgsp1_rep	three_prime_UTR	16886142	16886439	.	-	.	Parent=Os09t0451000-01
Chr09	irgsp1_rep	mRNA	16886440	16887553	.	+	.	ID=Os09t0451133-00;Name=Os09t0451133-00;Locus_id=Os09g0451133;Note=Hypothetical gene.;Transcript_evidence=tplb0008n13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0451133-00;KEGG=Os09t0451133-00
Chr09	irgsp1_rep	CDS	16886440	16887012	.	+	0	Parent=Os09t0451133-00
Chr09	irgsp1_rep	three_prime_UTR	16887013	16887553	.	+	.	Parent=Os09t0451133-00
Chr09	irgsp1_rep	mRNA	16925420	16926731	.	-	.	ID=Os09t0451266-00;Name=Os09t0451266-00;Locus_id=Os09g0451266;Note=Hypothetical gene.;Transcript_evidence=tplb0008n13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0451266-00;KEGG=Os09t0451266-00
Chr09	irgsp1_rep	five_prime_UTR	16926730	16926731	.	-	.	Parent=Os09t0451266-00
Chr09	irgsp1_rep	CDS	16926133	16926729	.	-	0	Parent=Os09t0451266-00
Chr09	irgsp1_rep	three_prime_UTR	16925420	16926132	.	-	.	Parent=Os09t0451266-00
Chr09	irgsp1_rep	mRNA	16925457	16927046	.	+	.	ID=Os09t0451400-01;Name=Os09t0451400-01;Locus_id=Os09g0451400;RAP-DB Gene Symbol Synonym(s)=ACO2%2C OsACO2;RAP-DB Gene Name Synonym(s)=AMINOCYCLOPROPANE-1-CARBOXYLIC ACID OXIDASE 2%2C ACC oxidase 2;CGSNL Gene Symbol=ACO1;CGSNL Gene Name=AMINOCYCLOPROPANE-1-CARBOXYLIC ACID OXIDASE 1;Oryzabase Gene Symbol Synonym(s)=OsACO1%2C ACO;Oryzabase Gene Name Synonym(s)=ACC oxidase 1%2C ACC oxidase;Note=ACC oxidase%2C Ethylene biosynthesis;Transcript_evidence=AK058296;ORF_evidence=Q0J1C1,B7E2Q6;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Isopenicillin N synthase-like (IPR027443),Non-haem dioxygenase N-terminal domain (IPR026992),Oxoglutarate/iron-dependent dioxygenase (IPR005123);NIAS_FLcDNA=001-013-F04;Manual Curation=November 26%2C 2009;Literature_PMID=17012402;Oryzabase=9071;Expression=AK058296;TENOR=Os09t0451400-01;KEGG=Os09t0451400-01 (EC:1.14.17.4)
Chr09	irgsp1_rep	five_prime_UTR	16925457	16925572	.	+	.	Parent=Os09t0451400-01
Chr09	irgsp1_rep	CDS	16925573	16925686	.	+	0	Parent=Os09t0451400-01
Chr09	irgsp1_rep	CDS	16925851	16926705	.	+	0	Parent=Os09t0451400-01
Chr09	irgsp1_rep	three_prime_UTR	16926706	16927046	.	+	.	Parent=Os09t0451400-01
Chr09	irgsp1_rep	mRNA	16930987	16935856	.	+	.	ID=Os09t0451500-01;Name=Os09t0451500-01;Locus_id=Os09g0451500;Oryzabase Gene Symbol Synonym(s)=PDIL2%3B3%2C PDIL2-3%2C PDIL 2-3%2C OsPDIL2-3%2C PDIL 2-3;Oryzabase Gene Name Synonym(s)=PROTEIN DISULFIDE ISOMERASE-LIKE 2%3B3%2C protein disulfide-isomerase 2-3%2C protein disulfide isomerase 2-3%2C PDI-like protein 2-3;Note=Similar to protein disulfide isomerase.;Transcript_evidence=AK072941 (DDBJ%2C Best hit);ORF_evidence=Q67UF5 (UniProt);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035),Molecular Function: isomerase activity (GO:0016853);InterPro=Thioredoxin (IPR005746),Disulphide isomerase (IPR005788),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766),Thioredoxin%2C conserved site (IPR017937);NIAS_FLcDNA=J023150F04;Oryzabase=9282;Expression=AK072941;TENOR=Os09t0451500-01;KEGG=Os09t0451500-01 (EC:5.3.4.1)
Chr09	irgsp1_rep	five_prime_UTR	16930987	16931139	.	+	.	Parent=Os09t0451500-01
Chr09	irgsp1_rep	CDS	16931140	16931265	.	+	0	Parent=Os09t0451500-01
Chr09	irgsp1_rep	CDS	16931369	16931527	.	+	0	Parent=Os09t0451500-01
Chr09	irgsp1_rep	CDS	16932640	16932753	.	+	0	Parent=Os09t0451500-01
Chr09	irgsp1_rep	CDS	16933352	16933533	.	+	0	Parent=Os09t0451500-01
Chr09	irgsp1_rep	CDS	16933793	16933892	.	+	1	Parent=Os09t0451500-01
Chr09	irgsp1_rep	CDS	16934469	16934877	.	+	0	Parent=Os09t0451500-01
Chr09	irgsp1_rep	CDS	16935281	16935378	.	+	2	Parent=Os09t0451500-01
Chr09	irgsp1_rep	three_prime_UTR	16935379	16935430	.	+	.	Parent=Os09t0451500-01
Chr09	irgsp1_rep	three_prime_UTR	16935513	16935856	.	+	.	Parent=Os09t0451500-01
Chr09	irgsp1_rep	mRNA	16931041	16935904	.	+	.	ID=Os09t0451500-02;Name=Os09t0451500-02;Locus_id=Os09g0451500;RAP-DB Gene Symbol Synonym(s)=PDIL2%3B3;RAP-DB Gene Name Synonym(s)=Protein disulfide isomerase-like 2%3B3;Oryzabase Gene Symbol Synonym(s)=PDIL2%3B3%2C PDIL2-3%2C PDIL 2-3%2C OsPDIL2-3%2C PDIL 2-3;Oryzabase Gene Name Synonym(s)=PROTEIN DISULFIDE ISOMERASE-LIKE 2%3B3%2C protein disulfide-isomerase 2-3%2C protein disulfide isomerase 2-3%2C PDI-like protein 2-3;Note=Protein disulfide isomerase (PDI) family oxidoreductase%2C Ortholog of human P5%2C Protein Body (PB) development in the endosperm%2C Storage protein biogenesis;Transcript_evidence=AK062254;ORF_evidence=Q67UF5;GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: isomerase activity (GO:0016853);InterPro=Thioredoxin-like superfamily (IPR036249),Thioredoxin domain (IPR013766),Disulphide isomerase (IPR005788),Thioredoxin%2C conserved site (IPR017937);NIAS_FLcDNA=001-047-G06;Manual Curation=July 31%2C 2020;Literature_PMID=23299424,21278127;Oryzabase=9282;Expression=AK062254;TENOR=Os09t0451500-02;Subcellular location=endoplasmic reticulum lumen (GO:0005788), protein body (GO:0042735) [surface of PB-I]
Chr09	irgsp1_rep	five_prime_UTR	16931041	16931139	.	+	.	Parent=Os09t0451500-02
Chr09	irgsp1_rep	CDS	16931140	16931265	.	+	0	Parent=Os09t0451500-02
Chr09	irgsp1_rep	CDS	16931369	16931527	.	+	0	Parent=Os09t0451500-02
Chr09	irgsp1_rep	CDS	16932640	16932753	.	+	0	Parent=Os09t0451500-02
Chr09	irgsp1_rep	CDS	16933352	16933533	.	+	0	Parent=Os09t0451500-02
Chr09	irgsp1_rep	CDS	16933793	16933892	.	+	1	Parent=Os09t0451500-02
Chr09	irgsp1_rep	CDS	16934469	16934645	.	+	0	Parent=Os09t0451500-02
Chr09	irgsp1_rep	CDS	16934735	16934877	.	+	0	Parent=Os09t0451500-02
Chr09	irgsp1_rep	CDS	16935281	16935430	.	+	1	Parent=Os09t0451500-02
Chr09	irgsp1_rep	CDS	16935513	16935687	.	+	1	Parent=Os09t0451500-02
Chr09	irgsp1_rep	three_prime_UTR	16935688	16935904	.	+	.	Parent=Os09t0451500-02
Chr09	irgsp1_rep	mRNA	16941755	16943398	.	+	.	ID=Os09t0451700-00;Name=Os09t0451700-00;Locus_id=Os09g0451700;Note=Protein of unknown function DUF573 family protein.;Transcript_evidence=AJ277138 (DDBJ%2C Best hit);ORF_evidence=Q67UF2 (UniProt);InterPro=Protein of unknown function DUF573 (IPR007592);Expression=AJ277138;TENOR=Os09t0451700-00;KEGG=Os09t0451700-00
Chr09	irgsp1_rep	five_prime_UTR	16941755	16941755	.	+	.	Parent=Os09t0451700-00
Chr09	irgsp1_rep	CDS	16941756	16941826	.	+	0	Parent=Os09t0451700-00
Chr09	irgsp1_rep	CDS	16942384	16942764	.	+	1	Parent=Os09t0451700-00
Chr09	irgsp1_rep	CDS	16942821	16942911	.	+	1	Parent=Os09t0451700-00
Chr09	irgsp1_rep	three_prime_UTR	16942912	16943398	.	+	.	Parent=Os09t0451700-00
Chr09	irgsp1_rep	mRNA	16945131	16947984	.	-	.	ID=Os09t0451800-01;Name=Os09t0451800-01;Locus_id=Os09g0451800;Oryzabase Gene Name Synonym(s)=DUF1644 family protein;Note=Protein of unknown function DUF1644 family protein.;Transcript_evidence=AK109302 (DDBJ%2C Best hit);ORF_evidence=XP_002462476.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Protein of unknown function DUF1644 (IPR012866),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=002-188-E01;Oryzabase=19987;Expression=AK109302;TENOR=Os09t0451800-01;KEGG=Os09t0451800-01
Chr09	irgsp1_rep	five_prime_UTR	16947867	16947984	.	-	.	Parent=Os09t0451800-01
Chr09	irgsp1_rep	five_prime_UTR	16946189	16946199	.	-	.	Parent=Os09t0451800-01
Chr09	irgsp1_rep	CDS	16945493	16946188	.	-	0	Parent=Os09t0451800-01
Chr09	irgsp1_rep	three_prime_UTR	16945131	16945492	.	-	.	Parent=Os09t0451800-01
Chr09	irgsp1_rep	mRNA	16958544	16962140	.	+	.	ID=Os09t0452200-01;Name=Os09t0452200-01;Locus_id=Os09g0452200;RAP-DB Gene Symbol Synonym(s)=LYP4%2C Os-LYP4%2C OsLYP4;RAP-DB Gene Name Synonym(s)=lysin motif-containing protein 4%2C lysin motif (LysM)-containing protein 4%2C LysM-containing protein 4;Oryzabase Gene Symbol Synonym(s)=LYP4%2C Os-LYP4%2C OsLYP4;Oryzabase Gene Name Synonym(s)=lysin motif-containing protein 4%2C lysin motif (LysM)-containing protein  4%2C LysM-containing protein  4;Note=Lysin motif-containing protein%2C Pattern recognition receptor%2C Peptidoglycan and chitin perception in innate immunity;Transcript_evidence=AK106042;ORF_evidence=Q67UE8;InterPro=LysM domain (IPR018392);NIAS_FLcDNA=001-206-E02;Manual Curation=June 25%2C 2014;Literature_PMID=22872757;Oryzabase=11158;TENOR=Os09t0452200-01;KEGG=Os09t0452200-01
Chr09	irgsp1_rep	five_prime_UTR	16958544	16958725	.	+	.	Parent=Os09t0452200-01
Chr09	irgsp1_rep	CDS	16958726	16959389	.	+	0	Parent=Os09t0452200-01
Chr09	irgsp1_rep	CDS	16960936	16961053	.	+	2	Parent=Os09t0452200-01
Chr09	irgsp1_rep	CDS	16961184	16961348	.	+	1	Parent=Os09t0452200-01
Chr09	irgsp1_rep	CDS	16961462	16961493	.	+	1	Parent=Os09t0452200-01
Chr09	irgsp1_rep	CDS	16961581	16961807	.	+	2	Parent=Os09t0452200-01
Chr09	irgsp1_rep	three_prime_UTR	16961808	16962140	.	+	.	Parent=Os09t0452200-01
Chr09	irgsp1_rep	mRNA	16958659	16962049	.	+	.	ID=Os09t0452200-02;Name=Os09t0452200-02;Locus_id=Os09g0452200;Oryzabase Gene Symbol Synonym(s)=LYP4%2C Os-LYP4%2C OsLYP4;Oryzabase Gene Name Synonym(s)=lysin motif-containing protein 4%2C lysin motif (LysM)-containing protein  4%2C LysM-containing protein  4;Note=Similar to LysM-domain GPI-anchored protein 1 precursor. Splice isoform 2.;Transcript_evidence=AK059479 (DDBJ%2C Best hit);ORF_evidence=B6SSR0 (UniProt);GO=Biological Process: cell wall macromolecule catabolic process (GO:0016998);InterPro=Peptidoglycan-binding Lysin subgroup (IPR002482),Peptidoglycan-binding lysin domain (IPR018392);NIAS_FLcDNA=001-028-F03;Oryzabase=11158;TENOR=Os09t0452200-02;KEGG=Os09t0452200-02
Chr09	irgsp1_rep	five_prime_UTR	16958659	16958725	.	+	.	Parent=Os09t0452200-02
Chr09	irgsp1_rep	CDS	16958726	16959389	.	+	0	Parent=Os09t0452200-02
Chr09	irgsp1_rep	CDS	16960936	16961053	.	+	2	Parent=Os09t0452200-02
Chr09	irgsp1_rep	CDS	16961184	16961348	.	+	1	Parent=Os09t0452200-02
Chr09	irgsp1_rep	CDS	16961462	16961493	.	+	1	Parent=Os09t0452200-02
Chr09	irgsp1_rep	CDS	16961581	16961807	.	+	2	Parent=Os09t0452200-02
Chr09	irgsp1_rep	three_prime_UTR	16961808	16962049	.	+	.	Parent=Os09t0452200-02
Chr09	irgsp1_rep	mRNA	16963276	16965800	.	+	.	ID=Os09t0452300-01;Name=Os09t0452300-01;Locus_id=Os09g0452300;Note=Similar to cDNA%2C clone: J065054A13%2C full insert sequence.;Transcript_evidence=AK240811 (DDBJ%2C Best hit);ORF_evidence=B7F8I2 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J065006N24;TENOR=Os09t0452300-01;KEGG=Os09t0452300-01
Chr09	irgsp1_rep	five_prime_UTR	16963276	16963873	.	+	.	Parent=Os09t0452300-01
Chr09	irgsp1_rep	CDS	16963874	16963874	.	+	0	Parent=Os09t0452300-01
Chr09	irgsp1_rep	CDS	16963969	16964115	.	+	2	Parent=Os09t0452300-01
Chr09	irgsp1_rep	CDS	16964186	16964259	.	+	2	Parent=Os09t0452300-01
Chr09	irgsp1_rep	CDS	16964479	16964567	.	+	0	Parent=Os09t0452300-01
Chr09	irgsp1_rep	CDS	16965029	16965143	.	+	1	Parent=Os09t0452300-01
Chr09	irgsp1_rep	CDS	16965293	16965490	.	+	0	Parent=Os09t0452300-01
Chr09	irgsp1_rep	three_prime_UTR	16965491	16965800	.	+	.	Parent=Os09t0452300-01
Chr09	irgsp1_rep	mRNA	16970180	16971671	.	+	.	ID=Os09t0452400-01;Name=Os09t0452400-01;Locus_id=Os09g0452400;Note=Peptidase A1 domain containing protein.;Transcript_evidence=AK063358 (DDBJ%2C Best hit);ORF_evidence=NP_001147206.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=001-114-C09;Expression=AK063358;TENOR=Os09t0452400-01;KEGG=Os09t0452400-01
Chr09	irgsp1_rep	five_prime_UTR	16970180	16970259	.	+	.	Parent=Os09t0452400-01
Chr09	irgsp1_rep	CDS	16970260	16971585	.	+	0	Parent=Os09t0452400-01
Chr09	irgsp1_rep	three_prime_UTR	16971586	16971671	.	+	.	Parent=Os09t0452400-01
Chr09	irgsp1_rep	mRNA	16973695	16975737	.	+	.	ID=Os09t0452700-00;Name=Os09t0452700-00;Locus_id=Os09g0452700;CGSNL Gene Symbol=UBL40-1;CGSNL Gene Name=UBIQUITIN FUSION RIBOSOMAL PROTEIN L40-1;Oryzabase Gene Symbol Synonym(s)=UbL40-1%2C OsUbL40-1;Oryzabase Gene Name Synonym(s)=Ubiquitin 81-aa extension protein 1%2C ubiquitin fusion ribosomal protein L40-1;Note=Ubiquitin.;Transcript_evidence=CT837725 (DDBJ%2C Best hit);ORF_evidence=NP_001150785.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735),Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin (IPR000626),Ribosomal protein L40e (IPR001975),Ubiquitin conserved site (IPR019954),Ubiquitin supergroup (IPR019955),Ubiquitin subgroup (IPR019956);Oryzabase=17714;TENOR=Os09t0452700-00;KEGG=Os09t0452700-00
Chr09	irgsp1_rep	five_prime_UTR	16973695	16973783	.	+	.	Parent=Os09t0452700-00
Chr09	irgsp1_rep	CDS	16973784	16973886	.	+	0	Parent=Os09t0452700-00
Chr09	irgsp1_rep	CDS	16974796	16975006	.	+	2	Parent=Os09t0452700-00
Chr09	irgsp1_rep	CDS	16975129	16975195	.	+	1	Parent=Os09t0452700-00
Chr09	irgsp1_rep	CDS	16975418	16975459	.	+	0	Parent=Os09t0452700-00
Chr09	irgsp1_rep	three_prime_UTR	16975460	16975737	.	+	.	Parent=Os09t0452700-00
Chr09	irgsp1_rep	mRNA	16973780	16975191	.	-	.	ID=Os09t0452750-00;Name=Os09t0452750-00;Locus_id=Os09g0452750;Note=Non-protein coding transcript.;Transcript_evidence=BT016508 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0452750-00
Chr09	irgsp1_rep	exon	16975110	16975191	.	-	.	Parent=Os09t0452750-00
Chr09	irgsp1_rep	exon	16974794	16974965	.	-	.	Parent=Os09t0452750-00
Chr09	irgsp1_rep	exon	16973780	16973884	.	-	.	Parent=Os09t0452750-00
Chr09	irgsp1_rep	mRNA	16977482	16978928	.	+	.	ID=Os09t0452800-01;Name=Os09t0452800-01;Locus_id=Os09g0452800;Note=Peptidase A1 domain containing protein.;Transcript_evidence=AK105952 (DDBJ%2C Best hit);ORF_evidence=A2Z1X8 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=001-205-D02;Expression=AK105952;TENOR=Os09t0452800-01;KEGG=Os09t0452800-01
Chr09	irgsp1_rep	five_prime_UTR	16977482	16977513	.	+	.	Parent=Os09t0452800-01
Chr09	irgsp1_rep	CDS	16977514	16978875	.	+	0	Parent=Os09t0452800-01
Chr09	irgsp1_rep	three_prime_UTR	16978876	16978928	.	+	.	Parent=Os09t0452800-01
Chr09	irgsp1_rep	mRNA	16980037	16983867	.	-	.	ID=Os09t0452900-01;Name=Os09t0452900-01;Locus_id=Os09g0452900;Note=Glycosyl transferase%2C family 31 protein.;Transcript_evidence=AK068378 (DDBJ%2C Best hit);ORF_evidence=B6TMZ4 (UniProt);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Glycosyl transferase%2C family 31 (IPR002659);NIAS_FLcDNA=J013146K16;Expression=AK068378;TENOR=Os09t0452900-01;KEGG=Os09t0452900-01
Chr09	irgsp1_rep	five_prime_UTR	16983798	16983867	.	-	.	Parent=Os09t0452900-01
Chr09	irgsp1_rep	CDS	16983694	16983797	.	-	0	Parent=Os09t0452900-01
Chr09	irgsp1_rep	CDS	16983422	16983521	.	-	1	Parent=Os09t0452900-01
Chr09	irgsp1_rep	CDS	16982811	16982869	.	-	0	Parent=Os09t0452900-01
Chr09	irgsp1_rep	CDS	16982526	16982713	.	-	1	Parent=Os09t0452900-01
Chr09	irgsp1_rep	CDS	16982046	16982109	.	-	2	Parent=Os09t0452900-01
Chr09	irgsp1_rep	CDS	16981553	16981625	.	-	1	Parent=Os09t0452900-01
Chr09	irgsp1_rep	CDS	16981299	16981419	.	-	0	Parent=Os09t0452900-01
Chr09	irgsp1_rep	CDS	16981136	16981223	.	-	2	Parent=Os09t0452900-01
Chr09	irgsp1_rep	CDS	16980912	16981037	.	-	1	Parent=Os09t0452900-01
Chr09	irgsp1_rep	CDS	16980707	16980816	.	-	1	Parent=Os09t0452900-01
Chr09	irgsp1_rep	CDS	16980472	16980620	.	-	2	Parent=Os09t0452900-01
Chr09	irgsp1_rep	three_prime_UTR	16980037	16980471	.	-	.	Parent=Os09t0452900-01
Chr09	irgsp1_rep	mRNA	16988216	16990373	.	-	.	ID=Os09t0453000-01;Name=Os09t0453000-01;Locus_id=Os09g0453000;Note=Uncharacterised protein family UPF0220 domain containing protein.;Transcript_evidence=AK120561 (DDBJ%2C Best hit);ORF_evidence=A2Z1Y0 (UniProt);InterPro=Uncharacterised protein family UPF0220 (IPR007919);NIAS_FLcDNA=J013132I06;Expression=AK120561;TENOR=Os09t0453000-01;KEGG=Os09t0453000-01
Chr09	irgsp1_rep	five_prime_UTR	16990327	16990373	.	-	.	Parent=Os09t0453000-01
Chr09	irgsp1_rep	CDS	16990191	16990326	.	-	0	Parent=Os09t0453000-01
Chr09	irgsp1_rep	CDS	16989992	16990091	.	-	2	Parent=Os09t0453000-01
Chr09	irgsp1_rep	CDS	16988546	16988698	.	-	1	Parent=Os09t0453000-01
Chr09	irgsp1_rep	CDS	16988408	16988444	.	-	1	Parent=Os09t0453000-01
Chr09	irgsp1_rep	three_prime_UTR	16988216	16988407	.	-	.	Parent=Os09t0453000-01
Chr09	irgsp1_rep	mRNA	16989810	16990373	.	-	.	ID=Os09t0453000-02;Name=Os09t0453000-02;Locus_id=Os09g0453000;Note=Similar to transmembrane protein 50A.;Transcript_evidence=AK121475 (DDBJ%2C Best hit);ORF_evidence=A2Z1Y0 (UniProt);InterPro=Uncharacterised protein family UPF0220 (IPR007919);NIAS_FLcDNA=J023148P12;Expression=AK121475;TENOR=Os09t0453000-02;KEGG=Os09t0453000-02
Chr09	irgsp1_rep	five_prime_UTR	16990327	16990373	.	-	.	Parent=Os09t0453000-02
Chr09	irgsp1_rep	CDS	16990191	16990326	.	-	0	Parent=Os09t0453000-02
Chr09	irgsp1_rep	CDS	16989988	16990091	.	-	2	Parent=Os09t0453000-02
Chr09	irgsp1_rep	three_prime_UTR	16989810	16989987	.	-	.	Parent=Os09t0453000-02
Chr09	irgsp1_rep	mRNA	16991807	16996017	.	-	.	ID=Os09t0453100-01;Name=Os09t0453100-01;Locus_id=Os09g0453100;Note=Conserved hypothetical protein.;Transcript_evidence=AK100428 (DDBJ%2C Best hit);ORF_evidence=NP_001176858.1 (RefSeq);NIAS_FLcDNA=J023088D18;Expression=AK100428;TENOR=Os09t0453100-01;KEGG=Os09t0453100-01
Chr09	irgsp1_rep	five_prime_UTR	16995844	16996017	.	-	.	Parent=Os09t0453100-01
Chr09	irgsp1_rep	CDS	16995502	16995843	.	-	0	Parent=Os09t0453100-01
Chr09	irgsp1_rep	CDS	16995374	16995397	.	-	0	Parent=Os09t0453100-01
Chr09	irgsp1_rep	three_prime_UTR	16994536	16995373	.	-	.	Parent=Os09t0453100-01
Chr09	irgsp1_rep	three_prime_UTR	16994316	16994436	.	-	.	Parent=Os09t0453100-01
Chr09	irgsp1_rep	three_prime_UTR	16993862	16994021	.	-	.	Parent=Os09t0453100-01
Chr09	irgsp1_rep	three_prime_UTR	16993701	16993762	.	-	.	Parent=Os09t0453100-01
Chr09	irgsp1_rep	three_prime_UTR	16993067	16993604	.	-	.	Parent=Os09t0453100-01
Chr09	irgsp1_rep	three_prime_UTR	16992906	16992979	.	-	.	Parent=Os09t0453100-01
Chr09	irgsp1_rep	three_prime_UTR	16991807	16992238	.	-	.	Parent=Os09t0453100-01
Chr09	irgsp1_rep	mRNA	16996543	16999431	.	+	.	ID=Os09t0453200-00;Name=Os09t0453200-00;Locus_id=Os09g0453200;Note=Similar to transmembrane emp24 domain-containing protein 10.;Transcript_evidence=EU971148 (DDBJ);ORF_evidence=B6U1N3 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: integral to membrane (GO:0016021);InterPro=GOLD (IPR009038);TENOR=Os09t0453200-00;KEGG=Os09t0453200-00
Chr09	irgsp1_rep	five_prime_UTR	16996543	16996554	.	+	.	Parent=Os09t0453200-00
Chr09	irgsp1_rep	CDS	16996555	16996761	.	+	0	Parent=Os09t0453200-00
Chr09	irgsp1_rep	CDS	16998735	16998944	.	+	0	Parent=Os09t0453200-00
Chr09	irgsp1_rep	CDS	16999027	16999103	.	+	0	Parent=Os09t0453200-00
Chr09	irgsp1_rep	CDS	16999205	16999349	.	+	1	Parent=Os09t0453200-00
Chr09	irgsp1_rep	three_prime_UTR	16999350	16999431	.	+	.	Parent=Os09t0453200-00
Chr09	irgsp1_rep	mRNA	16999461	17001374	.	-	.	ID=Os09t0453300-01;Name=Os09t0453300-01;Locus_id=Os09g0453300;CGSNL Gene Symbol=ANN10;CGSNL Gene Name=ANNEXIN 10;Oryzabase Gene Symbol Synonym(s)=OsANN10;Oryzabase Gene Name Synonym(s)=Annexin 10;Note=Annexin family protein.;Transcript_evidence=AK121859 (DDBJ%2C Best hit);ORF_evidence=B4FJC1 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509),Molecular Function: calcium-dependent phospholipid binding (GO:0005544);InterPro=Annexin (IPR001464),Annexin%2C plant (IPR009118),Annexin repeat (IPR018502);NIAS_FLcDNA=J033102I24;Oryzabase=15473;Expression=AK121859;TENOR=Os09t0453300-01;KEGG=Os09t0453300-01
Chr09	irgsp1_rep	five_prime_UTR	17001024	17001374	.	-	.	Parent=Os09t0453300-01
Chr09	irgsp1_rep	CDS	17000814	17001023	.	-	0	Parent=Os09t0453300-01
Chr09	irgsp1_rep	CDS	17000505	17000732	.	-	0	Parent=Os09t0453300-01
Chr09	irgsp1_rep	CDS	17000176	17000394	.	-	0	Parent=Os09t0453300-01
Chr09	irgsp1_rep	CDS	16999939	17000028	.	-	0	Parent=Os09t0453300-01
Chr09	irgsp1_rep	CDS	16999641	16999853	.	-	0	Parent=Os09t0453300-01
Chr09	irgsp1_rep	three_prime_UTR	16999461	16999640	.	-	.	Parent=Os09t0453300-01
Chr09	irgsp1_rep	mRNA	16999461	17001079	.	-	.	ID=Os09t0453300-02;Name=Os09t0453300-02;Locus_id=Os09g0453300;CGSNL Gene Symbol=ANN10;CGSNL Gene Name=ANNEXIN 10;Oryzabase Gene Symbol Synonym(s)=OsANN10;Oryzabase Gene Name Synonym(s)=Annexin 10;Note=Similar to Fiber annexin.;Transcript_evidence=AK064464 (DDBJ%2C Best hit);ORF_evidence=B4FJC1 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509),Molecular Function: calcium-dependent phospholipid binding (GO:0005544);InterPro=Annexin (IPR001464),Annexin repeat (IPR018502);NIAS_FLcDNA=002-110-G08;Oryzabase=15473;Expression=AK064464;TENOR=Os09t0453300-02;KEGG=Os09t0453300-02
Chr09	irgsp1_rep	five_prime_UTR	17001024	17001079	.	-	.	Parent=Os09t0453300-02
Chr09	irgsp1_rep	CDS	17000814	17001023	.	-	0	Parent=Os09t0453300-02
Chr09	irgsp1_rep	CDS	17000385	17000732	.	-	0	Parent=Os09t0453300-02
Chr09	irgsp1_rep	three_prime_UTR	17000176	17000384	.	-	.	Parent=Os09t0453300-02
Chr09	irgsp1_rep	three_prime_UTR	16999461	17000028	.	-	.	Parent=Os09t0453300-02
Chr09	irgsp1_rep	mRNA	17003046	17005694	.	-	.	ID=Os09t0453400-01;Name=Os09t0453400-01;Locus_id=Os09g0453400;Oryzabase Gene Symbol Synonym(s)=OsSigP6%2C SIGP6;Oryzabase Gene Name Synonym(s)=Type I Signal Peptidase 6%2C TYPE I SIGNAL PEPTIDASE 6;Note=Peptidase S26A%2C signal peptidase I family protein.;Transcript_evidence=AK120096 (DDBJ%2C Best hit);ORF_evidence=B6TF59 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: serine-type peptidase activity (GO:0008236);InterPro=Peptidase S26A%2C signal peptidase I (IPR000223),Peptidase S24/S26A/S26B/S26C%2C beta-ribbon domain (IPR011056),Peptidase S24/S26A/S26B/S26C (IPR015927),Peptidase S26 (IPR019533),Peptidase S26A%2C signal peptidase I%2C serine active site (IPR019756),Peptidase S26A%2C signal peptidase I%2C conserved site (IPR019758);NIAS_FLcDNA=J013022A21;Oryzabase=20047;Expression=AK120096;TENOR=Os09t0453400-01;KEGG=Os09t0453400-01 (EC:3.4.21.89)
Chr09	irgsp1_rep	five_prime_UTR	17005417	17005694	.	-	.	Parent=Os09t0453400-01
Chr09	irgsp1_rep	CDS	17004595	17005416	.	-	0	Parent=Os09t0453400-01
Chr09	irgsp1_rep	CDS	17004437	17004505	.	-	0	Parent=Os09t0453400-01
Chr09	irgsp1_rep	CDS	17004277	17004345	.	-	0	Parent=Os09t0453400-01
Chr09	irgsp1_rep	CDS	17004075	17004161	.	-	0	Parent=Os09t0453400-01
Chr09	irgsp1_rep	CDS	17003602	17003669	.	-	0	Parent=Os09t0453400-01
Chr09	irgsp1_rep	CDS	17003391	17003511	.	-	1	Parent=Os09t0453400-01
Chr09	irgsp1_rep	three_prime_UTR	17003046	17003390	.	-	.	Parent=Os09t0453400-01
Chr09	irgsp1_rep	mRNA	17008779	17014354	.	-	.	ID=Os09t0453500-01;Name=Os09t0453500-01;Locus_id=Os09g0453500;Note=Spectrin repeat containing protein.;Transcript_evidence=AK103120 (DDBJ%2C Best hit);ORF_evidence=B4FHB0 (UniProt);NIAS_FLcDNA=J033119I02;Expression=AK103120;TENOR=Os09t0453500-01;KEGG=Os09t0453500-01
Chr09	irgsp1_rep	five_prime_UTR	17014272	17014354	.	-	.	Parent=Os09t0453500-01
Chr09	irgsp1_rep	CDS	17014003	17014271	.	-	0	Parent=Os09t0453500-01
Chr09	irgsp1_rep	CDS	17013270	17013384	.	-	1	Parent=Os09t0453500-01
Chr09	irgsp1_rep	CDS	17010548	17010988	.	-	0	Parent=Os09t0453500-01
Chr09	irgsp1_rep	CDS	17009791	17010295	.	-	0	Parent=Os09t0453500-01
Chr09	irgsp1_rep	CDS	17009252	17009292	.	-	2	Parent=Os09t0453500-01
Chr09	irgsp1_rep	CDS	17009062	17009094	.	-	0	Parent=Os09t0453500-01
Chr09	irgsp1_rep	three_prime_UTR	17008779	17009061	.	-	.	Parent=Os09t0453500-01
Chr09	irgsp1_rep	mRNA	17016789	17019853	.	-	.	ID=Os09t0453700-01;Name=Os09t0453700-01;Locus_id=Os09g0453700;Oryzabase Gene Symbol Synonym(s)=OsPOP18%2C POP18;Oryzabase Gene Name Synonym(s)=Prolyl Oligopeptidase 18%2C PROLYL OLIGOPEPTIDASE 18;Note=Peptidase S9A%2C prolyl oligopeptidase family protein.;Transcript_evidence=AK068857 (DDBJ%2C Best hit);ORF_evidence=NP_201497.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: serine-type peptidase activity (GO:0008236);InterPro=Peptidase S9%2C prolyl oligopeptidase%2C catalytic domain (IPR001375),Peptidase S9A%2C prolyl oligopeptidase (IPR002470);NIAS_FLcDNA=J013169A12;Oryzabase=20026;Expression=AK068857;TENOR=Os09t0453700-01;KEGG=Os09t0453700-01
Chr09	irgsp1_rep	five_prime_UTR	17019852	17019853	.	-	.	Parent=Os09t0453700-01
Chr09	irgsp1_rep	CDS	17019633	17019851	.	-	0	Parent=Os09t0453700-01
Chr09	irgsp1_rep	CDS	17018958	17019148	.	-	0	Parent=Os09t0453700-01
Chr09	irgsp1_rep	CDS	17018367	17018547	.	-	1	Parent=Os09t0453700-01
Chr09	irgsp1_rep	three_prime_UTR	17016789	17018366	.	-	.	Parent=Os09t0453700-01
Chr09	irgsp1_rep	mRNA	17024575	17028546	.	+	.	ID=Os09t0453800-01;Name=Os09t0453800-01;Locus_id=Os09g0453800;CGSNL Gene Symbol=IDI4;CGSNL Gene Name=IRON-DEFICIENCY-INDUCED PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OsIDI4;Oryzabase Gene Name Synonym(s)=Aminotransferase OsIDI4%2C Fe-deficiency-induced protein 4;Note=1-aminocyclopropane-1-carboxylate synthase family protein.;Transcript_evidence=AK120288 (DDBJ%2C Best hit);ORF_evidence=B7F4N5 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Biological Process: 1-aminocyclopropane-1-carboxylate biosynthetic process (GO:0042218),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: 1-aminocyclopropane-1-carboxylate synthase activity (GO:0016847),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=1-aminocyclopropane-1-carboxylate synthase (IPR001176),Aminotransferase%2C class I/classII (IPR004839),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J013050C15;Oryzabase=11135;Expression=AK120288;TENOR=Os09t0453800-01;KEGG=Os09t0453800-01 (EC:2.6.1.-)
Chr09	irgsp1_rep	five_prime_UTR	17024575	17024656	.	+	.	Parent=Os09t0453800-01
Chr09	irgsp1_rep	CDS	17024657	17024905	.	+	0	Parent=Os09t0453800-01
Chr09	irgsp1_rep	CDS	17027091	17028242	.	+	0	Parent=Os09t0453800-01
Chr09	irgsp1_rep	three_prime_UTR	17028243	17028546	.	+	.	Parent=Os09t0453800-01
Chr09	irgsp1_rep	mRNA	17024689	17028416	.	+	.	ID=Os09t0453800-02;Name=Os09t0453800-02;Locus_id=Os09g0453800;CGSNL Gene Symbol=IDI4;CGSNL Gene Name=IRON-DEFICIENCY-INDUCED PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OsIDI4;Oryzabase Gene Name Synonym(s)=Aminotransferase OsIDI4%2C Fe-deficiency-induced protein 4;Note=Similar to Asparate aminotransferase.;Transcript_evidence=AK119212 (DDBJ%2C Best hit);ORF_evidence=B6T9H3 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Biological Process: 1-aminocyclopropane-1-carboxylate biosynthetic process (GO:0042218),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: 1-aminocyclopropane-1-carboxylate synthase activity (GO:0016847),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=1-aminocyclopropane-1-carboxylate synthase (IPR001176),Aminotransferase%2C class I/classII (IPR004839),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=001-041-E06;Oryzabase=11135;TENOR=Os09t0453800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	17024689	17024713	.	+	.	Parent=Os09t0453800-02
Chr09	irgsp1_rep	CDS	17024714	17024905	.	+	0	Parent=Os09t0453800-02
Chr09	irgsp1_rep	CDS	17027091	17028242	.	+	0	Parent=Os09t0453800-02
Chr09	irgsp1_rep	three_prime_UTR	17028243	17028416	.	+	.	Parent=Os09t0453800-02
Chr09	irgsp1_rep	mRNA	17033405	17035433	.	-	.	ID=Os09t0453900-01;Name=Os09t0453900-01;Locus_id=Os09g0453900;Note=MORN motif domain containing protein.;Transcript_evidence=AK120586 (DDBJ%2C Best hit);ORF_evidence=NP_173610.1 (RefSeq);InterPro=MORN motif (IPR003409);NIAS_FLcDNA=J013140B05;Expression=AK120586;TENOR=Os09t0453900-01;KEGG=Os09t0453900-01
Chr09	irgsp1_rep	five_prime_UTR	17035245	17035433	.	-	.	Parent=Os09t0453900-01
Chr09	irgsp1_rep	CDS	17034382	17035244	.	-	0	Parent=Os09t0453900-01
Chr09	irgsp1_rep	CDS	17033971	17034199	.	-	1	Parent=Os09t0453900-01
Chr09	irgsp1_rep	CDS	17033716	17033880	.	-	0	Parent=Os09t0453900-01
Chr09	irgsp1_rep	three_prime_UTR	17033405	17033715	.	-	.	Parent=Os09t0453900-01
Chr09	irgsp1_rep	mRNA	17033403	17034793	.	-	.	ID=Os09t0453900-02;Name=Os09t0453900-02;Locus_id=Os09g0453900;Note=Similar to predicted protein.;Transcript_evidence=AK107054 (DDBJ%2C Best hit);ORF_evidence=NP_173610.1 (RefSeq);InterPro=MORN motif (IPR003409);NIAS_FLcDNA=002-121-D05;Expression=AK107054;TENOR=Os09t0453900-02;KEGG=Os09t0453900-02
Chr09	irgsp1_rep	five_prime_UTR	17034792	17034793	.	-	.	Parent=Os09t0453900-02
Chr09	irgsp1_rep	CDS	17034382	17034791	.	-	0	Parent=Os09t0453900-02
Chr09	irgsp1_rep	CDS	17033947	17034199	.	-	1	Parent=Os09t0453900-02
Chr09	irgsp1_rep	three_prime_UTR	17033403	17033946	.	-	.	Parent=Os09t0453900-02
Chr09	irgsp1_rep	mRNA	17059864	17062344	.	+	.	ID=Os09t0454100-01;Name=Os09t0454100-01;Locus_id=Os09g0454100;Oryzabase Gene Symbol Synonym(s)=OsRhmbd15%2C RHMBD15;Oryzabase Gene Name Synonym(s)=Rhomboid 15%2C RHOMBOID 15;Note=Peptidase S54%2C rhomboid domain containing protein.;Transcript_evidence=AK107657 (DDBJ%2C Best hit);ORF_evidence=NP_001148641.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Cellular Component: integral to membrane (GO:0016021),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S54%2C rhomboid (IPR002610),Peptidase S54%2C rhomboid domain (IPR022764);NIAS_FLcDNA=002-131-G06;Oryzabase=20071;Expression=AK107657;TENOR=Os09t0454100-01;KEGG=Os09t0454100-01
Chr09	irgsp1_rep	five_prime_UTR	17059864	17059881	.	+	.	Parent=Os09t0454100-01
Chr09	irgsp1_rep	CDS	17059882	17060088	.	+	0	Parent=Os09t0454100-01
Chr09	irgsp1_rep	CDS	17060358	17060614	.	+	0	Parent=Os09t0454100-01
Chr09	irgsp1_rep	CDS	17060712	17060766	.	+	1	Parent=Os09t0454100-01
Chr09	irgsp1_rep	CDS	17060847	17060927	.	+	0	Parent=Os09t0454100-01
Chr09	irgsp1_rep	CDS	17061008	17061104	.	+	0	Parent=Os09t0454100-01
Chr09	irgsp1_rep	CDS	17061211	17061278	.	+	2	Parent=Os09t0454100-01
Chr09	irgsp1_rep	CDS	17061439	17061537	.	+	0	Parent=Os09t0454100-01
Chr09	irgsp1_rep	CDS	17061659	17061700	.	+	0	Parent=Os09t0454100-01
Chr09	irgsp1_rep	CDS	17061775	17061918	.	+	0	Parent=Os09t0454100-01
Chr09	irgsp1_rep	three_prime_UTR	17061919	17062215	.	+	.	Parent=Os09t0454100-01
Chr09	irgsp1_rep	three_prime_UTR	17062255	17062344	.	+	.	Parent=Os09t0454100-01
Chr09	irgsp1_rep	mRNA	17062568	17067527	.	-	.	ID=Os09t0454200-01;Name=Os09t0454200-01;Locus_id=Os09g0454200;Note=Conserved hypothetical protein.;Transcript_evidence=AK121117 (DDBJ%2C Best hit),AK101045 (DDBJ%2C Best hit);ORF_evidence=B9G3Z4 (UniProt);NIAS_FLcDNA=J023074A22,J033005H20;TENOR=Os09t0454200-01
Chr09	irgsp1_rep	five_prime_UTR	17067308	17067527	.	-	.	Parent=Os09t0454200-01
Chr09	irgsp1_rep	CDS	17067073	17067307	.	-	0	Parent=Os09t0454200-01
Chr09	irgsp1_rep	CDS	17064992	17065101	.	-	2	Parent=Os09t0454200-01
Chr09	irgsp1_rep	CDS	17064453	17064818	.	-	0	Parent=Os09t0454200-01
Chr09	irgsp1_rep	CDS	17063621	17064365	.	-	0	Parent=Os09t0454200-01
Chr09	irgsp1_rep	CDS	17063052	17063065	.	-	2	Parent=Os09t0454200-01
Chr09	irgsp1_rep	three_prime_UTR	17062568	17063051	.	-	.	Parent=Os09t0454200-01
Chr09	irgsp1_rep	mRNA	17062568	17064761	.	-	.	ID=Os09t0454200-02;Name=Os09t0454200-02;Locus_id=Os09g0454200;Note=Hypothetical conserved gene.;Transcript_evidence=AK105819 (DDBJ%2C Best hit);ORF_evidence=B9G3Z4 (UniProt);NIAS_FLcDNA=001-203-D04;Expression=AK105819;TENOR=Os09t0454200-02;KEGG=Os09t0454200-02
Chr09	irgsp1_rep	CDS	17064453	17064761	.	-	0	Parent=Os09t0454200-02
Chr09	irgsp1_rep	CDS	17063621	17064365	.	-	0	Parent=Os09t0454200-02
Chr09	irgsp1_rep	CDS	17063052	17063065	.	-	2	Parent=Os09t0454200-02
Chr09	irgsp1_rep	three_prime_UTR	17062568	17063051	.	-	.	Parent=Os09t0454200-02
Chr09	irgsp1_rep	mRNA	17071783	17074061	.	+	.	ID=Os09t0454300-01;Name=Os09t0454300-01;Locus_id=Os09g0454300;Oryzabase Gene Symbol Synonym(s)=OsFbox491%2C Os_F0580;Oryzabase Gene Name Synonym(s)=F-box protein 491;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK063505 (DDBJ%2C Best hit);ORF_evidence=NP_001150287.1 (RefSeq);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=001-116-F05;Oryzabase=17261;Expression=AK063505;TENOR=Os09t0454300-01;KEGG=Os09t0454300-01
Chr09	irgsp1_rep	five_prime_UTR	17071783	17071916	.	+	.	Parent=Os09t0454300-01
Chr09	irgsp1_rep	five_prime_UTR	17072188	17072217	.	+	.	Parent=Os09t0454300-01
Chr09	irgsp1_rep	CDS	17072218	17072986	.	+	0	Parent=Os09t0454300-01
Chr09	irgsp1_rep	CDS	17073285	17073565	.	+	2	Parent=Os09t0454300-01
Chr09	irgsp1_rep	CDS	17073663	17073899	.	+	0	Parent=Os09t0454300-01
Chr09	irgsp1_rep	three_prime_UTR	17073900	17074061	.	+	.	Parent=Os09t0454300-01
Chr09	irgsp1_rep	mRNA	17077665	17079624	.	-	.	ID=Os09t0454500-01;Name=Os09t0454500-01;Locus_id=Os09g0454500;CGSNL Gene Symbol=ALPHACA9;CGSNL Gene Name=ALPHA-CARBONIC ANHYDRASE 9;Oryzabase Gene Symbol Synonym(s)=OsalphaCA9%2C alphaCA9;Oryzabase Gene Name Synonym(s)=alpha-carbonic anhydrase 9;Note=Carbonic anhydrase%2C CAH1-like domain containing protein.;Transcript_evidence=AK111065 (DDBJ%2C Best hit);ORF_evidence=A3BZH9 (UniProt);GO=Biological Process: one-carbon metabolic process (GO:0006730),Molecular Function: carbonate dehydratase activity (GO:0004089),Molecular Function: zinc ion binding (GO:0008270);InterPro=Carbonic anhydrase%2C alpha-class%2C catalytic domain (IPR001148),Carbonic anhydrase%2C alpha-class%2C conserved site (IPR018338),Carbonic anhydrase%2C alpha-class (IPR023561);NIAS_FLcDNA=002-175-D12;Oryzabase=21653;Expression=AK111065;TENOR=Os09t0454500-01;KEGG=Os09t0454500-01 (EC:4.2.1.1)
Chr09	irgsp1_rep	five_prime_UTR	17079604	17079624	.	-	.	Parent=Os09t0454500-01
Chr09	irgsp1_rep	CDS	17079456	17079603	.	-	0	Parent=Os09t0454500-01
Chr09	irgsp1_rep	CDS	17079080	17079291	.	-	2	Parent=Os09t0454500-01
Chr09	irgsp1_rep	CDS	17078221	17078327	.	-	0	Parent=Os09t0454500-01
Chr09	irgsp1_rep	CDS	17077851	17078055	.	-	1	Parent=Os09t0454500-01
Chr09	irgsp1_rep	three_prime_UTR	17077665	17077850	.	-	.	Parent=Os09t0454500-01
Chr09	irgsp1_rep	mRNA	17081142	17083418	.	+	.	ID=Os09t0454600-00;Name=Os09t0454600-00;Locus_id=Os09g0454600;CGSNL Gene Symbol=PT19;CGSNL Gene Name=PHOSPHATE TRANSPORTER 19;Oryzabase Gene Symbol Synonym(s)=OsPT19;Oryzabase Gene Name Synonym(s)=phosphate transporter 19;Note=Similar to Mitochondrial phosphate transporter (Fragment).;Transcript_evidence=tplb0001f02 (Wheat FLcDNA);ORF_evidence=Q01J73 (UniProt);InterPro=Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);Oryzabase=21397;TENOR=Os09t0454600-00;KEGG=Os09t0454600-00
Chr09	irgsp1_rep	five_prime_UTR	17081142	17081201	.	+	.	Parent=Os09t0454600-00
Chr09	irgsp1_rep	CDS	17081202	17081429	.	+	0	Parent=Os09t0454600-00
Chr09	irgsp1_rep	CDS	17082120	17082481	.	+	0	Parent=Os09t0454600-00
Chr09	irgsp1_rep	CDS	17082576	17082619	.	+	1	Parent=Os09t0454600-00
Chr09	irgsp1_rep	CDS	17082730	17082944	.	+	2	Parent=Os09t0454600-00
Chr09	irgsp1_rep	CDS	17083056	17083180	.	+	0	Parent=Os09t0454600-00
Chr09	irgsp1_rep	CDS	17083268	17083343	.	+	1	Parent=Os09t0454600-00
Chr09	irgsp1_rep	three_prime_UTR	17083344	17083418	.	+	.	Parent=Os09t0454600-00
Chr09	irgsp1_rep	mRNA	17092204	17095317	.	-	.	ID=Os09t0454900-01;Name=Os09t0454900-01;Locus_id=Os09g0454900;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK102152 (DDBJ%2C Best hit);ORF_evidence=A3BZI1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033086D22;Expression=AK102152;TENOR=Os09t0454900-01;KEGG=Os09t0454900-01
Chr09	irgsp1_rep	five_prime_UTR	17095293	17095317	.	-	.	Parent=Os09t0454900-01
Chr09	irgsp1_rep	CDS	17092596	17095292	.	-	0	Parent=Os09t0454900-01
Chr09	irgsp1_rep	three_prime_UTR	17092204	17092595	.	-	.	Parent=Os09t0454900-01
Chr09	irgsp1_rep	mRNA	17092603	17096004	.	+	.	ID=Os09t0455000-01;Name=Os09t0455000-01;Locus_id=Os09g0455000;Note=Hypothetical protein.;Transcript_evidence=AK110047 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-160-C07;Expression=AK110047;TENOR=Os09t0455000-01;KEGG=Os09t0455000-01
Chr09	irgsp1_rep	five_prime_UTR	17092603	17092634	.	+	.	Parent=Os09t0455000-01
Chr09	irgsp1_rep	CDS	17092635	17093423	.	+	0	Parent=Os09t0455000-01
Chr09	irgsp1_rep	three_prime_UTR	17093424	17096004	.	+	.	Parent=Os09t0455000-01
Chr09	irgsp1_rep	mRNA	17109289	17111059	.	-	.	ID=Os09t0455200-01;Name=Os09t0455200-01;Locus_id=Os09g0455200;CGSNL Gene Symbol=HSFB4C;CGSNL Gene Name=HEAT STRESS TRANSCRIPTION FACTOR B4C;Oryzabase Gene Symbol Synonym(s)=HSfB4c%2C OsHsfB4c%2C OsHsf-22%2C HSF22%2C OsHSF22;Oryzabase Gene Name Synonym(s)=Heat stress transcription factor B4c%2C Heat stress transcription factor B-4c%2C Heat stress transcription factor 22;Note=Heat shock factor (HSF)-type%2C DNA-binding domain containing protein.;Transcript_evidence=AK241190 (DDBJ%2C Best hit);ORF_evidence=Q67U94 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Heat shock factor (HSF)-type%2C DNA-binding (IPR000232),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=J065120N14;Oryzabase=8566;TENOR=Os09t0455200-01;KEGG=Os09t0455200-01
Chr09	irgsp1_rep	five_prime_UTR	17110948	17111059	.	-	.	Parent=Os09t0455200-01
Chr09	irgsp1_rep	CDS	17110696	17110947	.	-	0	Parent=Os09t0455200-01
Chr09	irgsp1_rep	CDS	17109675	17110607	.	-	0	Parent=Os09t0455200-01
Chr09	irgsp1_rep	three_prime_UTR	17109289	17109674	.	-	.	Parent=Os09t0455200-01
Chr09	irgsp1_rep	mRNA	17109830	17110935	.	+	.	ID=Os09t0455250-00;Name=Os09t0455250-00;Locus_id=Os09g0455250;Note=Hypothetical protein.;Transcript_evidence=tplb0033f11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0455250-00
Chr09	irgsp1_rep	five_prime_UTR	17109830	17110137	.	+	.	Parent=Os09t0455250-00
Chr09	irgsp1_rep	CDS	17110138	17110325	.	+	0	Parent=Os09t0455250-00
Chr09	irgsp1_rep	CDS	17110449	17110606	.	+	1	Parent=Os09t0455250-00
Chr09	irgsp1_rep	CDS	17110695	17110699	.	+	2	Parent=Os09t0455250-00
Chr09	irgsp1_rep	three_prime_UTR	17110700	17110935	.	+	.	Parent=Os09t0455250-00
Chr09	irgsp1_rep	mRNA	17132211	17133470	.	+	.	ID=Os09t0455300-01;Name=Os09t0455300-01;Locus_id=Os09g0455300;Oryzabase Gene Symbol Synonym(s)=OsbHLH120%2C bHLH120;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 120;Note=Similar to INDEHISCENT protein.;Transcript_evidence=AK060477 (DDBJ%2C Best hit),AK070458 (DDBJ%2C Best hit);ORF_evidence=B6STU1 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=001-012-F09,J023048E05;Oryzabase=15399;Expression=AK060477;TENOR=Os09t0455300-01;KEGG=Os09t0455300-01
Chr09	irgsp1_rep	five_prime_UTR	17132211	17132387	.	+	.	Parent=Os09t0455300-01
Chr09	irgsp1_rep	CDS	17132388	17133098	.	+	0	Parent=Os09t0455300-01
Chr09	irgsp1_rep	three_prime_UTR	17133099	17133470	.	+	.	Parent=Os09t0455300-01
Chr09	irgsp1_rep	mRNA	17142733	17143141	.	+	.	ID=Os09t0455400-01;Name=Os09t0455400-01;Locus_id=Os09g0455400;Note=Similar to Heat shock protein.;Transcript_evidence=AK242362 (DDBJ%2C Best hit);ORF_evidence=B6THA0 (UniProt);InterPro=Protein of unknown function DUF926 (IPR009269);NIAS_FLcDNA=J080031C01;TENOR=Os09t0455400-01;KEGG=Os09t0455400-01
Chr09	irgsp1_rep	five_prime_UTR	17142733	17142733	.	+	.	Parent=Os09t0455400-01
Chr09	irgsp1_rep	CDS	17142734	17142961	.	+	0	Parent=Os09t0455400-01
Chr09	irgsp1_rep	three_prime_UTR	17142962	17143141	.	+	.	Parent=Os09t0455400-01
Chr09	irgsp1_rep	mRNA	17145776	17147058	.	-	.	ID=Os09t0455500-01;Name=Os09t0455500-01;Locus_id=Os09g0455500;Note=Alpha/beta hydrolase fold-3 domain containing protein.;Transcript_evidence=AK065686 (DDBJ%2C Best hit);ORF_evidence=NP_001148840.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=J013042H09;Oryzabase=23368;Expression=AK065686;TENOR=Os09t0455500-01;KEGG=Os09t0455500-01
Chr09	irgsp1_rep	five_prime_UTR	17147021	17147058	.	-	.	Parent=Os09t0455500-01
Chr09	irgsp1_rep	CDS	17146058	17147020	.	-	0	Parent=Os09t0455500-01
Chr09	irgsp1_rep	three_prime_UTR	17145776	17146057	.	-	.	Parent=Os09t0455500-01
Chr09	irgsp1_rep	mRNA	17171776	17172747	.	+	.	ID=Os09t0455750-00;Name=Os09t0455750-00;Locus_id=Os09g0455750;Note=Hypothetical protein.;Transcript_evidence=EU972973 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0455750-00
Chr09	irgsp1_rep	five_prime_UTR	17171776	17172031	.	+	.	Parent=Os09t0455750-00
Chr09	irgsp1_rep	CDS	17172032	17172397	.	+	0	Parent=Os09t0455750-00
Chr09	irgsp1_rep	three_prime_UTR	17172398	17172747	.	+	.	Parent=Os09t0455750-00
Chr09	irgsp1_rep	mRNA	17171733	17172815	.	-	.	ID=Os09t0455900-01;Name=Os09t0455900-01;Locus_id=Os09g0455900;Note=Alpha/beta hydrolase fold-3 domain containing protein.;Transcript_evidence=AK061010 (DDBJ%2C Best hit);ORF_evidence=NP_001148840.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=006-204-A12;Expression=AK061010;TENOR=Os09t0455900-01;KEGG=Os09t0455900-01
Chr09	irgsp1_rep	five_prime_UTR	17172745	17172815	.	-	.	Parent=Os09t0455900-01
Chr09	irgsp1_rep	CDS	17171785	17172744	.	-	0	Parent=Os09t0455900-01
Chr09	irgsp1_rep	three_prime_UTR	17171733	17171784	.	-	.	Parent=Os09t0455900-01
Chr09	irgsp1_rep	mRNA	17182867	17188315	.	+	.	ID=Os09t0456100-01;Name=Os09t0456100-01;Locus_id=Os09g0456100;RAP-DB Gene Symbol Synonym(s)=LP1;RAP-DB Gene Name Synonym(s)=LONG PANICLE 1;CGSNL Gene Symbol=REM5.3;CGSNL Gene Name=REMORIN 5.3;Oryzabase Gene Symbol Synonym(s)=OsREM5.3;Oryzabase Gene Name Synonym(s)=Remorin 5.3%2C remorin group 5 member 3;Note=Remorin_C-containing protein%2C Control of panicle length;Transcript_evidence=AK072474;ORF_evidence=Q67TQ6;InterPro=Remorin%2C C-terminal (IPR005516);NIAS_FLcDNA=J023121I15;Manual Curation=September 12%2C 2017;Literature_PMID=27200064;Oryzabase=20277;Expression=AK072474;TENOR=Os09t0456100-01;KEGG=Os09t0456100-01
Chr09	irgsp1_rep	five_prime_UTR	17182867	17183078	.	+	.	Parent=Os09t0456100-01
Chr09	irgsp1_rep	CDS	17183079	17183306	.	+	0	Parent=Os09t0456100-01
Chr09	irgsp1_rep	CDS	17183901	17183982	.	+	0	Parent=Os09t0456100-01
Chr09	irgsp1_rep	CDS	17184090	17184215	.	+	2	Parent=Os09t0456100-01
Chr09	irgsp1_rep	CDS	17184297	17185082	.	+	2	Parent=Os09t0456100-01
Chr09	irgsp1_rep	CDS	17185394	17185745	.	+	2	Parent=Os09t0456100-01
Chr09	irgsp1_rep	CDS	17186118	17186199	.	+	1	Parent=Os09t0456100-01
Chr09	irgsp1_rep	CDS	17186407	17186613	.	+	0	Parent=Os09t0456100-01
Chr09	irgsp1_rep	three_prime_UTR	17186614	17186631	.	+	.	Parent=Os09t0456100-01
Chr09	irgsp1_rep	three_prime_UTR	17187564	17188315	.	+	.	Parent=Os09t0456100-01
Chr09	irgsp1_rep	mRNA	17184097	17188315	.	+	.	ID=Os09t0456100-02;Name=Os09t0456100-02;Locus_id=Os09g0456100;CGSNL Gene Symbol=REM5.3;CGSNL Gene Name=REMORIN 5.3;Oryzabase Gene Symbol Synonym(s)=OsREM5.3;Oryzabase Gene Name Synonym(s)=Remorin 5.3%2C remorin group 5 member 3;Note=Hypothetical conserved gene.;Transcript_evidence=AK073880 (DDBJ%2C Best hit);ORF_evidence=B8BCK7 (UniProt);InterPro=Remorin%2C C-terminal (IPR005516);NIAS_FLcDNA=J033071G17;Oryzabase=20277;Expression=AK073880;TENOR=Os09t0456100-02;KEGG=Os09t0456100-02
Chr09	irgsp1_rep	five_prime_UTR	17184097	17184097	.	+	.	Parent=Os09t0456100-02
Chr09	irgsp1_rep	CDS	17184098	17184215	.	+	0	Parent=Os09t0456100-02
Chr09	irgsp1_rep	CDS	17184297	17185082	.	+	2	Parent=Os09t0456100-02
Chr09	irgsp1_rep	CDS	17185394	17185745	.	+	2	Parent=Os09t0456100-02
Chr09	irgsp1_rep	CDS	17186118	17186199	.	+	1	Parent=Os09t0456100-02
Chr09	irgsp1_rep	CDS	17186407	17186613	.	+	0	Parent=Os09t0456100-02
Chr09	irgsp1_rep	three_prime_UTR	17186614	17186631	.	+	.	Parent=Os09t0456100-02
Chr09	irgsp1_rep	three_prime_UTR	17187564	17188315	.	+	.	Parent=Os09t0456100-02
Chr09	irgsp1_rep	mRNA	17184336	17186195	.	-	.	ID=Os09t0456150-00;Name=Os09t0456150-00;Locus_id=Os09g0456150;Note=Non-protein coding transcript.;Transcript_evidence=tplb0035l08 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os09t0456150-00
Chr09	irgsp1_rep	exon	17186075	17186195	.	-	.	Parent=Os09t0456150-00
Chr09	irgsp1_rep	exon	17185306	17185708	.	-	.	Parent=Os09t0456150-00
Chr09	irgsp1_rep	exon	17184336	17184968	.	-	.	Parent=Os09t0456150-00
Chr09	irgsp1_rep	mRNA	17190097	17194010	.	+	.	ID=Os09t0456200-01;Name=Os09t0456200-01;Locus_id=Os09g0456200;RAP-DB Gene Symbol Synonym(s)=bZIP72%2C OsbZIP72;RAP-DB Gene Name Synonym(s)=bZIP transcription factor 72;CGSNL Gene Symbol=BZIP72;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 72;Oryzabase Gene Symbol Synonym(s)=OsbZIP72%2C OsAREB2%2C OsABF4%2C Osbzip72%2C OsABI5%2C ABI5;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 72%2C AREB/ABF-family protein 2;Note=bZIP transcription factor%2C Drought tolerance%2C Regulation of ABA signaling%2C Seed germination;Transcript_evidence=AK065873;ORF_evidence=Q67TQ5;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA-binding transcription factor activity (GO:0003700);InterPro=Basic-leucine zipper domain (IPR004827);NIAS_FLcDNA=J013049N23;Manual Curation=June 26%2C 2020;Literature_PMID=32583457,19048288;Oryzabase=10152;Expression=AK065873;TENOR=Os09t0456200-01;KEGG=Os09t0456200-01;Subcellular location=nucleus (GO:0005634)
Chr09	irgsp1_rep	five_prime_UTR	17190097	17190168	.	+	.	Parent=Os09t0456200-01
Chr09	irgsp1_rep	CDS	17190169	17191119	.	+	0	Parent=Os09t0456200-01
Chr09	irgsp1_rep	CDS	17191413	17191484	.	+	0	Parent=Os09t0456200-01
Chr09	irgsp1_rep	CDS	17192326	17192355	.	+	0	Parent=Os09t0456200-01
Chr09	irgsp1_rep	CDS	17193395	17193472	.	+	0	Parent=Os09t0456200-01
Chr09	irgsp1_rep	three_prime_UTR	17193473	17194010	.	+	.	Parent=Os09t0456200-01
Chr09	irgsp1_rep	mRNA	17207486	17208952	.	-	.	ID=Os09t0456700-01;Name=Os09t0456700-01;Locus_id=Os09g0456700;Note=Conserved hypothetical protein.;Transcript_evidence=AK108731 (DDBJ%2C Best hit);ORF_evidence=B8BCL0 (UniProt);NIAS_FLcDNA=002-150-D03;Expression=AK108731;TENOR=Os09t0456700-01;KEGG=Os09t0456700-01
Chr09	irgsp1_rep	five_prime_UTR	17208906	17208952	.	-	.	Parent=Os09t0456700-01
Chr09	irgsp1_rep	CDS	17207715	17208905	.	-	0	Parent=Os09t0456700-01
Chr09	irgsp1_rep	three_prime_UTR	17207486	17207714	.	-	.	Parent=Os09t0456700-01
Chr09	irgsp1_rep	mRNA	17221479	17228923	.	+	.	ID=Os09t0456800-01;Name=Os09t0456800-01;Locus_id=Os09g0456800;CGSNL Gene Symbol=HSFB1;CGSNL Gene Name=HEAT STRESS TRANSCRIPTION FACTOR B1;Oryzabase Gene Symbol Synonym(s)=HSfB1%2C OsHsfB1%2C OsHsf-23%2C HSF23%2C OsHsf23%2C OsHSF23%2C TBF1;Oryzabase Gene Name Synonym(s)=Heat stress transcription factor B1%2C Heat stress transcription factor B-1%2C Heat stress transcription factor 23;Note=Similar to Heat stress transcription factor Spl7 (Heat shock transcription factor) (Heat shock factor RHSF10).;Transcript_evidence=AK061433 (DDBJ%2C Best hit),AK101182 (DDBJ%2C Best hit);ORF_evidence=F1DK71 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Heat shock factor (HSF)-type%2C DNA-binding (IPR000232),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=006-307-A01,J033029F08;Oryzabase=8560;Expression=AK061433;TENOR=Os09t0456800-01;KEGG=Os09t0456800-01
Chr09	irgsp1_rep	five_prime_UTR	17221479	17221824	.	+	.	Parent=Os09t0456800-01
Chr09	irgsp1_rep	CDS	17221825	17222091	.	+	0	Parent=Os09t0456800-01
Chr09	irgsp1_rep	CDS	17227972	17228613	.	+	0	Parent=Os09t0456800-01
Chr09	irgsp1_rep	three_prime_UTR	17228614	17228923	.	+	.	Parent=Os09t0456800-01
Chr09	irgsp1_rep	mRNA	17221622	17228613	.	-	.	ID=Os09t0456850-00;Name=Os09t0456850-00;Locus_id=Os09g0456850;Note=Hypothetical protein.;Transcript_evidence=tplb0033f11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0456850-00
Chr09	irgsp1_rep	five_prime_UTR	17228479	17228613	.	-	.	Parent=Os09t0456850-00
Chr09	irgsp1_rep	CDS	17227961	17228478	.	-	0	Parent=Os09t0456850-00
Chr09	irgsp1_rep	CDS	17222087	17222087	.	-	1	Parent=Os09t0456850-00
Chr09	irgsp1_rep	three_prime_UTR	17221622	17222086	.	-	.	Parent=Os09t0456850-00
Chr09	irgsp1_rep	mRNA	17234726	17244776	.	-	.	ID=Os09t0456900-01;Name=Os09t0456900-01;Locus_id=Os09g0456900;Note=Nucleic acid-binding%2C OB-fold domain containing protein.;Transcript_evidence=AK073236 (DDBJ%2C Best hit);ORF_evidence=Q2QXF4 (UniProt);InterPro=Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=J033010F19;Expression=AK073236;TENOR=Os09t0456900-01;KEGG=Os09t0456900-01
Chr09	irgsp1_rep	five_prime_UTR	17244728	17244776	.	-	.	Parent=Os09t0456900-01
Chr09	irgsp1_rep	five_prime_UTR	17244563	17244646	.	-	.	Parent=Os09t0456900-01
Chr09	irgsp1_rep	five_prime_UTR	17244425	17244490	.	-	.	Parent=Os09t0456900-01
Chr09	irgsp1_rep	CDS	17244383	17244424	.	-	0	Parent=Os09t0456900-01
Chr09	irgsp1_rep	CDS	17237538	17237681	.	-	0	Parent=Os09t0456900-01
Chr09	irgsp1_rep	CDS	17237188	17237461	.	-	0	Parent=Os09t0456900-01
Chr09	irgsp1_rep	CDS	17236939	17237099	.	-	2	Parent=Os09t0456900-01
Chr09	irgsp1_rep	three_prime_UTR	17236643	17236938	.	-	.	Parent=Os09t0456900-01
Chr09	irgsp1_rep	three_prime_UTR	17236478	17236559	.	-	.	Parent=Os09t0456900-01
Chr09	irgsp1_rep	three_prime_UTR	17236267	17236387	.	-	.	Parent=Os09t0456900-01
Chr09	irgsp1_rep	three_prime_UTR	17236019	17236179	.	-	.	Parent=Os09t0456900-01
Chr09	irgsp1_rep	three_prime_UTR	17235463	17235937	.	-	.	Parent=Os09t0456900-01
Chr09	irgsp1_rep	three_prime_UTR	17235306	17235385	.	-	.	Parent=Os09t0456900-01
Chr09	irgsp1_rep	three_prime_UTR	17235151	17235225	.	-	.	Parent=Os09t0456900-01
Chr09	irgsp1_rep	three_prime_UTR	17234726	17235047	.	-	.	Parent=Os09t0456900-01
Chr09	irgsp1_rep	mRNA	17252034	17255420	.	-	.	ID=Os09t0457100-01;Name=Os09t0457100-01;Locus_id=Os09g0457100;CGSNL Gene Symbol=ABA8OX3;CGSNL Gene Name=ABA-8'-HYDROXYLASE 3;Oryzabase Gene Symbol Synonym(s)=OsABA8OX3%2C OsABA8ox3%2C CYP707A7%2C OsCYP707A7%2C OsAba-ox3%2C OsABA8ox3%2C OsABA8'ox3%2C ABA8'ox3%2C OsABAX3%2C ABAX3;Oryzabase Gene Name Synonym(s)=Abscisic acid 8'-hydroxylase 3%2C ABA 8'-hydroxylase 3%2C CytoChrome P450 707A7;Note=CytoChrome P450 family protein.;Transcript_evidence=AK288402 (DDBJ%2C Best hit);ORF_evidence=Q0J185 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J090030B22;Oryzabase=7253;TENOR=Os09t0457100-01;KEGG=Os09t0457100-01 (EC:1.14.13.93)
Chr09	irgsp1_rep	five_prime_UTR	17255332	17255420	.	-	.	Parent=Os09t0457100-01
Chr09	irgsp1_rep	CDS	17255108	17255331	.	-	0	Parent=Os09t0457100-01
Chr09	irgsp1_rep	CDS	17254600	17254918	.	-	1	Parent=Os09t0457100-01
Chr09	irgsp1_rep	CDS	17254346	17254498	.	-	0	Parent=Os09t0457100-01
Chr09	irgsp1_rep	CDS	17253861	17254202	.	-	0	Parent=Os09t0457100-01
Chr09	irgsp1_rep	CDS	17253651	17253729	.	-	0	Parent=Os09t0457100-01
Chr09	irgsp1_rep	CDS	17253402	17253508	.	-	2	Parent=Os09t0457100-01
Chr09	irgsp1_rep	CDS	17252746	17252864	.	-	0	Parent=Os09t0457100-01
Chr09	irgsp1_rep	CDS	17252277	17252436	.	-	1	Parent=Os09t0457100-01
Chr09	irgsp1_rep	three_prime_UTR	17252034	17252276	.	-	.	Parent=Os09t0457100-01
Chr09	irgsp1_rep	mRNA	17252731	17255203	.	+	.	ID=Os09t0457250-00;Name=Os09t0457250-00;Locus_id=Os09g0457250;Note=Hypothetical protein.;Transcript_evidence=tplb0043h07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0457250-00
Chr09	irgsp1_rep	five_prime_UTR	17252731	17252877	.	+	.	Parent=Os09t0457250-00
Chr09	irgsp1_rep	five_prime_UTR	17253416	17253507	.	+	.	Parent=Os09t0457250-00
Chr09	irgsp1_rep	five_prime_UTR	17253650	17253736	.	+	.	Parent=Os09t0457250-00
Chr09	irgsp1_rep	five_prime_UTR	17253868	17253974	.	+	.	Parent=Os09t0457250-00
Chr09	irgsp1_rep	CDS	17253975	17254184	.	+	0	Parent=Os09t0457250-00
Chr09	irgsp1_rep	CDS	17254325	17254498	.	+	0	Parent=Os09t0457250-00
Chr09	irgsp1_rep	CDS	17254602	17254817	.	+	0	Parent=Os09t0457250-00
Chr09	irgsp1_rep	three_prime_UTR	17254818	17254921	.	+	.	Parent=Os09t0457250-00
Chr09	irgsp1_rep	three_prime_UTR	17255111	17255203	.	+	.	Parent=Os09t0457250-00
Chr09	irgsp1_rep	mRNA	17288993	17291252	.	+	.	ID=Os09t0457400-01;Name=Os09t0457400-01;Locus_id=Os09g0457400;CGSNL Gene Symbol=AMY3A;CGSNL Gene Name=ALPHA-AMYLASE 3A;Oryzabase Gene Symbol Synonym(s)=Amy3A/B/C*(RAmy3A/B/C)%2C Amy3A%2C RAmy3A/B/C%2C Amy3A/B/C*%2C AMY1.2%2C Amy5%2C RAmy3A%2C OsEnS-129;Oryzabase Gene Name Synonym(s)=Alpha-amylase3A%2C Alpha-amylase isozyme 3A precursor%2C Alpha-amylase isozyme 3A%2C Alpha-amylase-3A%2C Amylase-5%2C endosperm-specific gene 129;Note=Alpha-amylase isozyme 3A precursor (EC 3.2.1.1) (1%2C4-alpha-D-glucan glucanohydrolase).;Transcript_evidence=AK063988 (DDBJ%2C Best hit),AK099330 (DDBJ%2C Best hit),AK099392 (DDBJ%2C Best hit);ORF_evidence=P27932 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: alpha-amylase activity (GO:0004556),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 13 (IPR006046),Glycosyl hydrolase%2C family 13%2C catalytic domain (IPR006047),Glycosyl hydrolase%2C family 13%2C subfamily%2C catalytic domain (IPR006589),Alpha-amylase%2C C-terminal beta-sheet (IPR012850),Alpha-amylase%2C plant (IPR013775),Glycosyl hydrolase%2C family 13%2C all-beta (IPR013780),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Alpha amylase (IPR015902),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-124-D12,J033011L07,J033075P18;Oryzabase=6860;TENOR=Os09t0457400-01
Chr09	irgsp1_rep	five_prime_UTR	17288993	17289135	.	+	.	Parent=Os09t0457400-01
Chr09	irgsp1_rep	CDS	17289136	17289234	.	+	0	Parent=Os09t0457400-01
Chr09	irgsp1_rep	CDS	17289361	17289491	.	+	0	Parent=Os09t0457400-01
Chr09	irgsp1_rep	CDS	17289901	17290708	.	+	1	Parent=Os09t0457400-01
Chr09	irgsp1_rep	CDS	17290799	17291083	.	+	0	Parent=Os09t0457400-01
Chr09	irgsp1_rep	three_prime_UTR	17291084	17291252	.	+	.	Parent=Os09t0457400-01
Chr09	irgsp1_rep	mRNA	17296167	17297881	.	-	.	ID=Os09t0457532-01;Name=Os09t0457532-01;Locus_id=Os09g0457532;Note=Hypothetical protein.;Transcript_evidence=AK241191 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065120P10;TENOR=Os09t0457532-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	17297404	17297881	.	-	.	Parent=Os09t0457532-01
Chr09	irgsp1_rep	five_prime_UTR	17297259	17297304	.	-	.	Parent=Os09t0457532-01
Chr09	irgsp1_rep	CDS	17296980	17297258	.	-	0	Parent=Os09t0457532-01
Chr09	irgsp1_rep	three_prime_UTR	17296366	17296979	.	-	.	Parent=Os09t0457532-01
Chr09	irgsp1_rep	three_prime_UTR	17296167	17296289	.	-	.	Parent=Os09t0457532-01
Chr09	irgsp1_rep	mRNA	17296197	17297688	.	+	.	ID=Os09t0457600-00;Name=Os09t0457600-00;Locus_id=Os09g0457600;CGSNL Gene Symbol=AMY3B;CGSNL Gene Name=ALPHA-AMYLASE 3B;Oryzabase Gene Symbol Synonym(s)=Amy3A/B/C*(RAmy3A/B/C)%2C alpha Amy6%2C AmyII-5%2C AMY1.6%2C Amy1.6%2C Amy3B%2C BRAmy3A/B/C%2C Amy3A/B/C*%2C Amy6%2C RAmy3B%2C alphaAmy6-C;Oryzabase Gene Name Synonym(s)=Alpha-amylase3B%2C Alpha-amylase isozyme 3B precursor%2C Alpha-amylase isozyme 3B%2C Alpha-amylase-3B%2C Amylase-6%2C Alpha-amylase-3A;Note=Alpha-amylase isozyme 3B precursor (EC 3.2.1.1) (1%2C4-alpha-D-glucan glucanohydrolase).;Transcript_evidence=P27937 (UniProt);ORF_evidence=P27937 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: alpha-amylase activity (GO:0004556),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 13 (IPR006046),Glycosyl hydrolase%2C family 13%2C catalytic domain (IPR006047),Glycosyl hydrolase%2C family 13%2C subfamily%2C catalytic domain (IPR006589),Alpha-amylase%2C C-terminal beta-sheet (IPR012850),Alpha-amylase%2C plant (IPR013775),Glycosyl hydrolase%2C family 13%2C all-beta (IPR013780),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Alpha amylase (IPR015902),Glycoside hydrolase%2C superfamily (IPR017853);Oryzabase=6861;TENOR=Os09t0457600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	17296197	17296289	.	+	0	Parent=Os09t0457600-00
Chr09	irgsp1_rep	CDS	17296366	17297304	.	+	0	Parent=Os09t0457600-00
Chr09	irgsp1_rep	CDS	17297404	17297688	.	+	0	Parent=Os09t0457600-00
Chr09	irgsp1_rep	mRNA	17302887	17304538	.	-	.	ID=Os09t0457700-01;Name=Os09t0457700-01;Locus_id=Os09g0457700;Note=Hypothetical protein.;Transcript_evidence=AK112109 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-113-B07;Expression=AK112109;TENOR=Os09t0457700-01;KEGG=Os09t0457700-01
Chr09	irgsp1_rep	five_prime_UTR	17304407	17304538	.	-	.	Parent=Os09t0457700-01
Chr09	irgsp1_rep	CDS	17303579	17304406	.	-	0	Parent=Os09t0457700-01
Chr09	irgsp1_rep	three_prime_UTR	17303537	17303578	.	-	.	Parent=Os09t0457700-01
Chr09	irgsp1_rep	three_prime_UTR	17302887	17303464	.	-	.	Parent=Os09t0457700-01
Chr09	irgsp1_rep	mRNA	17303319	17304962	.	+	.	ID=Os09t0457800-01;Name=Os09t0457800-01;Locus_id=Os09g0457800;CGSNL Gene Symbol=AMY3C;CGSNL Gene Name=ALPHA-AMYLASE 3C;Oryzabase Gene Symbol Synonym(s)=Amy3A/B/C*(RAmy3A/B/C)%2C AmyII-6%2C AMY1.7%2C Amy3C%2C RAmy3A/B/C%2C Amy3A/B/C*%2C Amy7%2C AMY3B%2C RAmy3C;Oryzabase Gene Name Synonym(s)=Alpha-amylase3C%2C Alpha-amylase isozyme 3C precursor%2C Alpha-amylase isozyme 3C%2C Amylase-7%2C Alpha-amylase-3A;Note=Alpha-amylase isozyme 3C precursor (EC 3.2.1.1) (1%2C4-alpha-D-glucan glucanohydrolase).;Transcript_evidence=AK101358 (DDBJ%2C Best hit);ORF_evidence=P27939 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: alpha-amylase activity (GO:0004556),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 13 (IPR006046),Glycosyl hydrolase%2C family 13%2C catalytic domain (IPR006047),Glycosyl hydrolase%2C family 13%2C subfamily%2C catalytic domain (IPR006589),Alpha-amylase%2C C-terminal beta-sheet (IPR012850),Alpha-amylase%2C plant (IPR013775),Glycosyl hydrolase%2C family 13%2C all-beta (IPR013780),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Alpha amylase (IPR015902),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J033035C14;Oryzabase=8090;Expression=AK101358;TENOR=Os09t0457800-01;KEGG=Os09t0457800-01 (EC:3.2.1.1)
Chr09	irgsp1_rep	five_prime_UTR	17303319	17303348	.	+	.	Parent=Os09t0457800-01
Chr09	irgsp1_rep	CDS	17303349	17303441	.	+	0	Parent=Os09t0457800-01
Chr09	irgsp1_rep	CDS	17303564	17304502	.	+	0	Parent=Os09t0457800-01
Chr09	irgsp1_rep	CDS	17304593	17304874	.	+	0	Parent=Os09t0457800-01
Chr09	irgsp1_rep	three_prime_UTR	17304875	17304962	.	+	.	Parent=Os09t0457800-01
Chr09	irgsp1_rep	mRNA	17304551	17305735	.	-	.	ID=Os09t0457833-01;Name=Os09t0457833-01;Locus_id=Os09g0457833;Note=Hypothetical gene.;Transcript_evidence=AK241444 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065162L09;TENOR=Os09t0457833-01;KEGG=Os09t0457833-01
Chr09	irgsp1_rep	five_prime_UTR	17305735	17305735	.	-	.	Parent=Os09t0457833-01
Chr09	irgsp1_rep	CDS	17305522	17305734	.	-	0	Parent=Os09t0457833-01
Chr09	irgsp1_rep	three_prime_UTR	17305506	17305521	.	-	.	Parent=Os09t0457833-01
Chr09	irgsp1_rep	three_prime_UTR	17304551	17304905	.	-	.	Parent=Os09t0457833-01
Chr09	irgsp1_rep	mRNA	17306100	17307199	.	+	.	ID=Os09t0457900-01;Name=Os09t0457900-01;Locus_id=Os09g0457900;RAP-DB Gene Symbol Synonym(s)=ERF102%2C OsERF#102%2C OsERF102%2C AP2/EREBP#123%2C AP2/EREBP123%2C OsEATB%2C EATB;RAP-DB Gene Name Synonym(s)=ETHYLENE RESPONSE FACTOR 102%2C ethylene response factor 102%2C APETALA2/ethylene-responsive element binding protein 123%2C ERF protein associated with tillering and panicle branching;CGSNL Gene Symbol=ERF102;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 102;Oryzabase Gene Symbol Synonym(s)=OsERF#102%2C OsERF102%2C AP2/EREBP#123%2C AP2/EREBP123%2C OsEATB%2C EATB;Oryzabase Gene Name Synonym(s)=ethylene response factor 102%2C APETALA2/ethylene-responsive element binding protein 123%2C ERF protein associated with tillering and panicle branching;Note=AP2/ERF transcription factor%2C Regulation of the internode elongation;Transcript_evidence=EU622934 (9311%2C indica),AK067195;ORF_evidence=B2MV91,Q67U00;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=DNA-binding domain (IPR016177),AP2/ERF domain (IPR001471);NIAS_FLcDNA=J013098P10;Manual Curation=August 25%2C 2015;Literature_PMID=21753115;Oryzabase=10602;Expression=AK067195;TENOR=Os09t0457900-01;KEGG=Os09t0457900-01
Chr09	irgsp1_rep	five_prime_UTR	17306100	17306162	.	+	.	Parent=Os09t0457900-01
Chr09	irgsp1_rep	CDS	17306163	17306987	.	+	0	Parent=Os09t0457900-01
Chr09	irgsp1_rep	three_prime_UTR	17306988	17307199	.	+	.	Parent=Os09t0457900-01
Chr09	irgsp1_rep	mRNA	17309966	17312560	.	+	.	ID=Os09t0458000-00;Name=Os09t0458000-00;Locus_id=Os09g0458000;Note=Protein of unknown function DUF827%2C plant family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001063372.1 (RefSeq);InterPro=Protein of unknown function DUF827%2C plant (IPR008545);TENOR=Os09t0458000-00;KEGG=Os09t0458000-00
Chr09	irgsp1_rep	CDS	17309966	17310670	.	+	0	Parent=Os09t0458000-00
Chr09	irgsp1_rep	CDS	17310758	17312560	.	+	0	Parent=Os09t0458000-00
Chr09	irgsp1_rep	mRNA	17315508	17317450	.	-	.	ID=Os09t0458100-01;Name=Os09t0458100-01;Locus_id=Os09g0458100;Note=Xyloglucan fucosyltransferase family protein.;Transcript_evidence=AK109625 (DDBJ%2C Best hit);ORF_evidence=A2Z218 (UniProt);GO=Biological Process: cell wall biogenesis (GO:0042546),Cellular Component: membrane (GO:0016020),Molecular Function: galactoside 2-alpha-L-fucosyltransferase activity (GO:0008107);InterPro=Xyloglucan fucosyltransferase (IPR004938);NIAS_FLcDNA=002-138-B10;Expression=AK109625;TENOR=Os09t0458100-01;KEGG=Os09t0458100-01
Chr09	irgsp1_rep	five_prime_UTR	17317395	17317450	.	-	.	Parent=Os09t0458100-01
Chr09	irgsp1_rep	CDS	17317205	17317394	.	-	0	Parent=Os09t0458100-01
Chr09	irgsp1_rep	CDS	17315659	17317127	.	-	2	Parent=Os09t0458100-01
Chr09	irgsp1_rep	three_prime_UTR	17315508	17315658	.	-	.	Parent=Os09t0458100-01
Chr09	irgsp1_rep	mRNA	17319982	17320974	.	+	.	ID=Os09t0458200-01;Name=Os09t0458200-01;Locus_id=Os09g0458200;Note=Conserved hypothetical protein.;Transcript_evidence=AK108675 (DDBJ%2C Best hit);ORF_evidence=NP_001065070.1 (RefSeq);NIAS_FLcDNA=002-149-A01;TENOR=Os09t0458200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	17319982	17320260	.	+	0	Parent=Os09t0458200-01
Chr09	irgsp1_rep	three_prime_UTR	17320261	17320974	.	+	.	Parent=Os09t0458200-01
Chr09	irgsp1_rep	mRNA	17321016	17323723	.	+	.	ID=Os09t0458300-01;Name=Os09t0458300-01;Locus_id=Os09g0458300;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=AK108581 (DDBJ%2C Best hit);ORF_evidence=NP_188554.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Malectin-like carbohydrate-binding domain (IPR024788);NIAS_FLcDNA=002-145-H08;Expression=AK108581;TENOR=Os09t0458300-01;KEGG=Os09t0458300-01
Chr09	irgsp1_rep	five_prime_UTR	17321016	17321152	.	+	.	Parent=Os09t0458300-01
Chr09	irgsp1_rep	CDS	17321153	17321222	.	+	0	Parent=Os09t0458300-01
Chr09	irgsp1_rep	CDS	17321307	17321850	.	+	2	Parent=Os09t0458300-01
Chr09	irgsp1_rep	CDS	17321948	17322417	.	+	1	Parent=Os09t0458300-01
Chr09	irgsp1_rep	CDS	17322506	17322641	.	+	2	Parent=Os09t0458300-01
Chr09	irgsp1_rep	CDS	17322748	17322819	.	+	1	Parent=Os09t0458300-01
Chr09	irgsp1_rep	CDS	17322943	17323011	.	+	1	Parent=Os09t0458300-01
Chr09	irgsp1_rep	CDS	17323102	17323173	.	+	1	Parent=Os09t0458300-01
Chr09	irgsp1_rep	CDS	17323260	17323331	.	+	1	Parent=Os09t0458300-01
Chr09	irgsp1_rep	CDS	17323420	17323447	.	+	1	Parent=Os09t0458300-01
Chr09	irgsp1_rep	three_prime_UTR	17323448	17323723	.	+	.	Parent=Os09t0458300-01
Chr09	irgsp1_rep	mRNA	17324461	17327359	.	+	.	ID=Os09t0458400-01;Name=Os09t0458400-01;Locus_id=Os09g0458400;RAP-DB Gene Symbol Synonym(s)=OsCYO1;CGSNL Gene Symbol=CYO1;Oryzabase Gene Symbol Synonym(s)=OsCYO1;Oryzabase Gene Name Synonym(s)=cotyledon chloroplast biogenesis factor CYO1;Note=Ortholog of Arabidopsis thaliana cotyledon chloroplast biogenesis factor AtCYO1%2C Accumulation and/or assembly of photosystem I (PSI)%2C Regulation and/or maintenance of photosynthetic electron transport;Transcript_evidence=AK070055;ORF_evidence=Q67TZ5;NIAS_FLcDNA=J023039M22;Manual Curation=January 4%2C 2017;Literature_PMID=27835768;Oryzabase=21552;Expression=AK070055;TENOR=Os09t0458400-01;KEGG=Os09t0458400-01
Chr09	irgsp1_rep	five_prime_UTR	17324461	17324578	.	+	.	Parent=Os09t0458400-01
Chr09	irgsp1_rep	CDS	17324579	17324995	.	+	0	Parent=Os09t0458400-01
Chr09	irgsp1_rep	CDS	17325106	17325232	.	+	0	Parent=Os09t0458400-01
Chr09	irgsp1_rep	CDS	17327061	17327134	.	+	2	Parent=Os09t0458400-01
Chr09	irgsp1_rep	three_prime_UTR	17327135	17327359	.	+	.	Parent=Os09t0458400-01
Chr09	irgsp1_rep	mRNA	17324461	17327376	.	+	.	ID=Os09t0458400-02;Name=Os09t0458400-02;Locus_id=Os09g0458400;CGSNL Gene Symbol=CYO1;Oryzabase Gene Symbol Synonym(s)=OsCYO1;Oryzabase Gene Name Synonym(s)=cotyledon chloroplast biogenesis factor CYO1;Note=Hypothetical conserved gene.;Transcript_evidence=AK120321 (DDBJ%2C Best hit);ORF_evidence=NP_566627.1 (RefSeq);NIAS_FLcDNA=J013057C16;Oryzabase=21552;Expression=AK120321;TENOR=Os09t0458400-02;KEGG=Os09t0458400-02
Chr09	irgsp1_rep	five_prime_UTR	17324461	17324578	.	+	.	Parent=Os09t0458400-02
Chr09	irgsp1_rep	CDS	17324579	17324995	.	+	0	Parent=Os09t0458400-02
Chr09	irgsp1_rep	CDS	17325106	17325285	.	+	0	Parent=Os09t0458400-02
Chr09	irgsp1_rep	three_prime_UTR	17325286	17327376	.	+	.	Parent=Os09t0458400-02
Chr09	irgsp1_rep	mRNA	17325584	17329000	.	-	.	ID=Os09t0458500-01;Name=Os09t0458500-01;Locus_id=Os09g0458500;Note=Non-protein coding transcript.;Transcript_evidence=AK120367 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013069J23;TENOR=Os09t0458500-01
Chr09	irgsp1_rep	exon	17328811	17329000	.	-	.	Parent=Os09t0458500-01
Chr09	irgsp1_rep	exon	17325584	17325923	.	-	.	Parent=Os09t0458500-01
Chr09	irgsp1_rep	mRNA	17327290	17328338	.	-	.	ID=Os09t0458600-01;Name=Os09t0458600-01;Locus_id=Os09g0458600;Note=Hypothetical protein.;Transcript_evidence=AK066473 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013067K16;Expression=AK066473;TENOR=Os09t0458600-01;KEGG=Os09t0458600-01
Chr09	irgsp1_rep	five_prime_UTR	17328284	17328338	.	-	.	Parent=Os09t0458600-01
Chr09	irgsp1_rep	CDS	17327957	17328283	.	-	0	Parent=Os09t0458600-01
Chr09	irgsp1_rep	three_prime_UTR	17327290	17327956	.	-	.	Parent=Os09t0458600-01
Chr09	irgsp1_rep	mRNA	17327587	17328450	.	+	.	ID=Os09t0458700-01;Name=Os09t0458700-01;Locus_id=Os09g0458700;Note=EF hand domain containing protein.;Transcript_evidence=AK241786 (DDBJ%2C Best hit);ORF_evidence=NP_001148866.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J065207F05;TENOR=Os09t0458700-01;KEGG=Os09t0458700-01
Chr09	irgsp1_rep	five_prime_UTR	17327587	17327663	.	+	.	Parent=Os09t0458700-01
Chr09	irgsp1_rep	CDS	17327664	17328221	.	+	0	Parent=Os09t0458700-01
Chr09	irgsp1_rep	three_prime_UTR	17328222	17328450	.	+	.	Parent=Os09t0458700-01
Chr09	irgsp1_rep	mRNA	17332814	17333131	.	+	.	ID=Os09t0458800-00;Name=Os09t0458800-00;Locus_id=Os09g0458800;Note=EF hand domain containing protein.;Transcript_evidence=FP092430 (DDBJ);ORF_evidence=B4G1S0 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);TENOR=Os09t0458800-00;KEGG=Os09t0458800-00
Chr09	irgsp1_rep	CDS	17332814	17333131	.	+	0	Parent=Os09t0458800-00
Chr09	irgsp1_rep	mRNA	17338533	17339171	.	+	.	ID=Os09t0458900-01;Name=Os09t0458900-01;Locus_id=Os09g0458900;Note=EF hand domain containing protein.;Transcript_evidence=AK243631 (DDBJ%2C Best hit);ORF_evidence=B4G1S0 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J100087C15;TENOR=Os09t0458900-01;KEGG=Os09t0458900-01
Chr09	irgsp1_rep	five_prime_UTR	17338533	17338618	.	+	.	Parent=Os09t0458900-01
Chr09	irgsp1_rep	CDS	17338619	17338915	.	+	0	Parent=Os09t0458900-01
Chr09	irgsp1_rep	three_prime_UTR	17338916	17339171	.	+	.	Parent=Os09t0458900-01
Chr09	irgsp1_rep	mRNA	17350940	17352413	.	+	.	ID=Os09t0459200-01;Name=Os09t0459200-01;Locus_id=Os09g0459200;RAP-DB Gene Symbol Synonym(s)=SG1%2C OsSG1;RAP-DB Gene Name Synonym(s)=SHORT GRAIN 1%2C SHORT GRAIN1;CGSNL Gene Symbol=SG1;CGSNL Gene Name=SHORT GRAIN 1;Oryzabase Gene Symbol Synonym(s)=OsSG1%2C Sg1;Oryzabase Gene Name Synonym(s)=SHORT GRAIN1%2C Short grain 1;Note=Unknown product%2C Brassinosteroid signaling%2C Control of organ length;Transcript_evidence=AK110733;ORF_evidence=Q67J23;NIAS_FLcDNA=002-170-E12;Manual Curation=September 11%2C 2014;Literature_PMID=22209874;Oryzabase=9064;TENOR=Os09t0459200-01;KEGG=Os09t0459200-01
Chr09	irgsp1_rep	five_prime_UTR	17350940	17351064	.	+	.	Parent=Os09t0459200-01
Chr09	irgsp1_rep	CDS	17351065	17351505	.	+	0	Parent=Os09t0459200-01
Chr09	irgsp1_rep	CDS	17351841	17351873	.	+	0	Parent=Os09t0459200-01
Chr09	irgsp1_rep	three_prime_UTR	17351874	17352413	.	+	.	Parent=Os09t0459200-01
Chr09	irgsp1_rep	mRNA	17359210	17360267	.	+	.	ID=Os09t0459450-01;Name=Os09t0459450-01;Locus_id=Os09g0459450;Note=Hypothetical gene.;Transcript_evidence=AK241292 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065137P20;TENOR=Os09t0459450-01;KEGG=Os09t0459450-01
Chr09	irgsp1_rep	five_prime_UTR	17359210	17359494	.	+	.	Parent=Os09t0459450-01
Chr09	irgsp1_rep	CDS	17359495	17360031	.	+	0	Parent=Os09t0459450-01
Chr09	irgsp1_rep	three_prime_UTR	17360032	17360267	.	+	.	Parent=Os09t0459450-01
Chr09	irgsp1_rep	mRNA	17359274	17359728	.	-	.	ID=Os09t0459500-00;Name=Os09t0459500-00;Locus_id=Os09g0459500;Oryzabase Gene Symbol Synonym(s)=BIP119;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 119%2C BRI1-interacting protein 119%2C brassinosteroid receptor kinase-interacting protein 119;Note=Conserved hypothetical protein.;Transcript_evidence=AB118006 (DDBJ%2C Best hit);ORF_evidence=Q67J19 (UniProt);Oryzabase=13700;Expression=AB118006;TENOR=Os09t0459500-00;KEGG=Os09t0459500-00
Chr09	irgsp1_rep	five_prime_UTR	17359728	17359728	.	-	.	Parent=Os09t0459500-00
Chr09	irgsp1_rep	CDS	17359479	17359727	.	-	0	Parent=Os09t0459500-00
Chr09	irgsp1_rep	three_prime_UTR	17359274	17359478	.	-	.	Parent=Os09t0459500-00
Chr09	irgsp1_rep	mRNA	17366624	17371403	.	-	.	ID=Os09t0459600-01;Name=Os09t0459600-01;Locus_id=Os09g0459600;Oryzabase Gene Symbol Synonym(s)=OsPP2C69%2C PP2C69%2C OsPP109;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C69%2C protein phosphatase 2C 69%2C protein phosphatase 109;Note=Similar to Calmodulin-binding protein phosphatase.;Transcript_evidence=AK108735 (DDBJ%2C Best hit);ORF_evidence=B4FWJ2 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=002-150-D08;Oryzabase=17941;Expression=AK108735;TENOR=Os09t0459600-01;KEGG=Os09t0459600-01
Chr09	irgsp1_rep	five_prime_UTR	17371357	17371403	.	-	.	Parent=Os09t0459600-01
Chr09	irgsp1_rep	CDS	17371156	17371356	.	-	0	Parent=Os09t0459600-01
Chr09	irgsp1_rep	CDS	17370545	17370716	.	-	0	Parent=Os09t0459600-01
Chr09	irgsp1_rep	CDS	17370043	17370196	.	-	2	Parent=Os09t0459600-01
Chr09	irgsp1_rep	CDS	17369909	17369972	.	-	1	Parent=Os09t0459600-01
Chr09	irgsp1_rep	CDS	17369256	17369363	.	-	0	Parent=Os09t0459600-01
Chr09	irgsp1_rep	CDS	17368888	17369013	.	-	0	Parent=Os09t0459600-01
Chr09	irgsp1_rep	CDS	17368573	17368805	.	-	0	Parent=Os09t0459600-01
Chr09	irgsp1_rep	CDS	17367001	17367203	.	-	1	Parent=Os09t0459600-01
Chr09	irgsp1_rep	CDS	17366869	17366876	.	-	2	Parent=Os09t0459600-01
Chr09	irgsp1_rep	three_prime_UTR	17366624	17366868	.	-	.	Parent=Os09t0459600-01
Chr09	irgsp1_rep	mRNA	17367001	17371442	.	+	.	ID=Os09t0459700-00;Name=Os09t0459700-00;Locus_id=Os09g0459700;Note=Hypothetical protein.;Transcript_evidence=BT085317 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0459700-00
Chr09	irgsp1_rep	five_prime_UTR	17367001	17367183	.	+	.	Parent=Os09t0459700-00
Chr09	irgsp1_rep	five_prime_UTR	17368557	17368783	.	+	.	Parent=Os09t0459700-00
Chr09	irgsp1_rep	five_prime_UTR	17368862	17369015	.	+	.	Parent=Os09t0459700-00
Chr09	irgsp1_rep	five_prime_UTR	17369251	17369365	.	+	.	Parent=Os09t0459700-00
Chr09	irgsp1_rep	five_prime_UTR	17369983	17370177	.	+	.	Parent=Os09t0459700-00
Chr09	irgsp1_rep	five_prime_UTR	17370528	17370577	.	+	.	Parent=Os09t0459700-00
Chr09	irgsp1_rep	CDS	17370578	17370701	.	+	0	Parent=Os09t0459700-00
Chr09	irgsp1_rep	CDS	17371142	17371442	.	+	2	Parent=Os09t0459700-00
Chr09	irgsp1_rep	mRNA	17377010	17388853	.	+	.	ID=Os09t0459800-01;Name=Os09t0459800-01;Locus_id=Os09g0459800;Note=Similar to ARP protein.;Transcript_evidence=AK100324 (DDBJ%2C Best hit);ORF_evidence=Q39174 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),Quinone oxidoreductase/zeta-crystallin%2C conserved site (IPR002364),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);NIAS_FLcDNA=J023079I03;Expression=AK100324;TENOR=Os09t0459800-01;KEGG=Os09t0459800-01
Chr09	irgsp1_rep	five_prime_UTR	17377010	17377314	.	+	.	Parent=Os09t0459800-01
Chr09	irgsp1_rep	CDS	17377315	17377369	.	+	0	Parent=Os09t0459800-01
Chr09	irgsp1_rep	CDS	17378327	17378500	.	+	2	Parent=Os09t0459800-01
Chr09	irgsp1_rep	CDS	17379346	17379527	.	+	2	Parent=Os09t0459800-01
Chr09	irgsp1_rep	CDS	17379963	17380068	.	+	0	Parent=Os09t0459800-01
Chr09	irgsp1_rep	CDS	17380359	17380435	.	+	2	Parent=Os09t0459800-01
Chr09	irgsp1_rep	CDS	17381136	17381223	.	+	0	Parent=Os09t0459800-01
Chr09	irgsp1_rep	CDS	17381971	17382160	.	+	2	Parent=Os09t0459800-01
Chr09	irgsp1_rep	CDS	17383004	17383130	.	+	1	Parent=Os09t0459800-01
Chr09	irgsp1_rep	CDS	17383235	17383315	.	+	0	Parent=Os09t0459800-01
Chr09	irgsp1_rep	CDS	17383466	17383567	.	+	0	Parent=Os09t0459800-01
Chr09	irgsp1_rep	CDS	17383693	17383788	.	+	0	Parent=Os09t0459800-01
Chr09	irgsp1_rep	CDS	17383930	17384004	.	+	0	Parent=Os09t0459800-01
Chr09	irgsp1_rep	CDS	17384397	17384516	.	+	0	Parent=Os09t0459800-01
Chr09	irgsp1_rep	CDS	17384970	17385098	.	+	0	Parent=Os09t0459800-01
Chr09	irgsp1_rep	CDS	17385413	17385490	.	+	0	Parent=Os09t0459800-01
Chr09	irgsp1_rep	CDS	17385981	17386067	.	+	0	Parent=Os09t0459800-01
Chr09	irgsp1_rep	CDS	17388216	17388302	.	+	0	Parent=Os09t0459800-01
Chr09	irgsp1_rep	CDS	17388389	17388439	.	+	0	Parent=Os09t0459800-01
Chr09	irgsp1_rep	three_prime_UTR	17388440	17388853	.	+	.	Parent=Os09t0459800-01
Chr09	irgsp1_rep	mRNA	17377177	17388699	.	+	.	ID=Os09t0459800-02;Name=Os09t0459800-02;Locus_id=Os09g0459800;Note=Similar to ARP protein.;Transcript_evidence=AK060764 (DDBJ%2C Best hit);ORF_evidence=Q39174 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),Quinone oxidoreductase/zeta-crystallin%2C conserved site (IPR002364),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);NIAS_FLcDNA=001-033-A07;Expression=AK060764;TENOR=Os09t0459800-02;KEGG=Os09t0459800-02
Chr09	irgsp1_rep	five_prime_UTR	17377177	17377314	.	+	.	Parent=Os09t0459800-02
Chr09	irgsp1_rep	CDS	17377315	17377369	.	+	0	Parent=Os09t0459800-02
Chr09	irgsp1_rep	CDS	17378327	17378500	.	+	2	Parent=Os09t0459800-02
Chr09	irgsp1_rep	CDS	17379346	17379527	.	+	2	Parent=Os09t0459800-02
Chr09	irgsp1_rep	CDS	17379963	17380068	.	+	0	Parent=Os09t0459800-02
Chr09	irgsp1_rep	CDS	17380359	17380435	.	+	2	Parent=Os09t0459800-02
Chr09	irgsp1_rep	CDS	17381136	17381223	.	+	0	Parent=Os09t0459800-02
Chr09	irgsp1_rep	CDS	17381971	17382160	.	+	2	Parent=Os09t0459800-02
Chr09	irgsp1_rep	CDS	17383004	17383130	.	+	1	Parent=Os09t0459800-02
Chr09	irgsp1_rep	CDS	17383235	17383315	.	+	0	Parent=Os09t0459800-02
Chr09	irgsp1_rep	CDS	17383466	17383567	.	+	0	Parent=Os09t0459800-02
Chr09	irgsp1_rep	CDS	17383693	17383788	.	+	0	Parent=Os09t0459800-02
Chr09	irgsp1_rep	CDS	17383930	17384004	.	+	0	Parent=Os09t0459800-02
Chr09	irgsp1_rep	CDS	17384397	17384516	.	+	0	Parent=Os09t0459800-02
Chr09	irgsp1_rep	CDS	17384970	17385098	.	+	0	Parent=Os09t0459800-02
Chr09	irgsp1_rep	CDS	17385413	17385490	.	+	0	Parent=Os09t0459800-02
Chr09	irgsp1_rep	CDS	17385981	17386067	.	+	0	Parent=Os09t0459800-02
Chr09	irgsp1_rep	CDS	17388216	17388302	.	+	0	Parent=Os09t0459800-02
Chr09	irgsp1_rep	CDS	17388389	17388439	.	+	0	Parent=Os09t0459800-02
Chr09	irgsp1_rep	three_prime_UTR	17388440	17388699	.	+	.	Parent=Os09t0459800-02
Chr09	irgsp1_rep	mRNA	17377187	17386374	.	+	.	ID=Os09t0459800-03;Name=Os09t0459800-03;Locus_id=Os09g0459800;Note=Similar to NADPH oxidoreductase homolog (Fragment).;Transcript_evidence=AK102736 (DDBJ%2C Best hit);ORF_evidence=Q9SXZ7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),GroES-like (IPR011032);NIAS_FLcDNA=J033106C13;TENOR=Os09t0459800-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	17377187	17377369	.	+	.	Parent=Os09t0459800-03
Chr09	irgsp1_rep	five_prime_UTR	17378327	17378500	.	+	.	Parent=Os09t0459800-03
Chr09	irgsp1_rep	five_prime_UTR	17379346	17379527	.	+	.	Parent=Os09t0459800-03
Chr09	irgsp1_rep	five_prime_UTR	17379963	17381105	.	+	.	Parent=Os09t0459800-03
Chr09	irgsp1_rep	CDS	17381106	17381223	.	+	0	Parent=Os09t0459800-03
Chr09	irgsp1_rep	CDS	17381971	17382160	.	+	2	Parent=Os09t0459800-03
Chr09	irgsp1_rep	CDS	17383004	17383130	.	+	1	Parent=Os09t0459800-03
Chr09	irgsp1_rep	CDS	17383235	17383345	.	+	0	Parent=Os09t0459800-03
Chr09	irgsp1_rep	three_prime_UTR	17383346	17383567	.	+	.	Parent=Os09t0459800-03
Chr09	irgsp1_rep	three_prime_UTR	17383693	17383788	.	+	.	Parent=Os09t0459800-03
Chr09	irgsp1_rep	three_prime_UTR	17383930	17384004	.	+	.	Parent=Os09t0459800-03
Chr09	irgsp1_rep	three_prime_UTR	17384397	17384516	.	+	.	Parent=Os09t0459800-03
Chr09	irgsp1_rep	three_prime_UTR	17384970	17385098	.	+	.	Parent=Os09t0459800-03
Chr09	irgsp1_rep	three_prime_UTR	17385413	17385490	.	+	.	Parent=Os09t0459800-03
Chr09	irgsp1_rep	three_prime_UTR	17385981	17386374	.	+	.	Parent=Os09t0459800-03
Chr09	irgsp1_rep	mRNA	17382140	17388858	.	+	.	ID=Os09t0459800-04;Name=Os09t0459800-04;Locus_id=Os09g0459800;Note=Similar to predicted protein.;Transcript_evidence=AK070246 (DDBJ%2C Best hit);ORF_evidence=Q9SXZ7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),Quinone oxidoreductase/zeta-crystallin%2C conserved site (IPR002364),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040),Polyketide synthase%2C enoylreductase (IPR020843);NIAS_FLcDNA=J023044M18;Expression=AK070246;TENOR=Os09t0459800-04;KEGG=Os09t0459800-04
Chr09	irgsp1_rep	five_prime_UTR	17382140	17382140	.	+	.	Parent=Os09t0459800-04
Chr09	irgsp1_rep	CDS	17382141	17382160	.	+	0	Parent=Os09t0459800-04
Chr09	irgsp1_rep	CDS	17383004	17383130	.	+	1	Parent=Os09t0459800-04
Chr09	irgsp1_rep	CDS	17383235	17383315	.	+	0	Parent=Os09t0459800-04
Chr09	irgsp1_rep	CDS	17383466	17383567	.	+	0	Parent=Os09t0459800-04
Chr09	irgsp1_rep	CDS	17383693	17383788	.	+	0	Parent=Os09t0459800-04
Chr09	irgsp1_rep	CDS	17383930	17384004	.	+	0	Parent=Os09t0459800-04
Chr09	irgsp1_rep	CDS	17384397	17384516	.	+	0	Parent=Os09t0459800-04
Chr09	irgsp1_rep	CDS	17384970	17385098	.	+	0	Parent=Os09t0459800-04
Chr09	irgsp1_rep	CDS	17385413	17385490	.	+	0	Parent=Os09t0459800-04
Chr09	irgsp1_rep	CDS	17385981	17386067	.	+	0	Parent=Os09t0459800-04
Chr09	irgsp1_rep	CDS	17388216	17388302	.	+	0	Parent=Os09t0459800-04
Chr09	irgsp1_rep	CDS	17388389	17388439	.	+	0	Parent=Os09t0459800-04
Chr09	irgsp1_rep	three_prime_UTR	17388440	17388858	.	+	.	Parent=Os09t0459800-04
Chr09	irgsp1_rep	mRNA	17377180	17388304	.	-	.	ID=Os09t0459850-00;Name=Os09t0459850-00;Locus_id=Os09g0459850;Note=Hypothetical protein.;Transcript_evidence=tplb0027b23 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0459850-00
Chr09	irgsp1_rep	five_prime_UTR	17388228	17388304	.	-	.	Parent=Os09t0459850-00
Chr09	irgsp1_rep	five_prime_UTR	17385976	17386080	.	-	.	Parent=Os09t0459850-00
Chr09	irgsp1_rep	five_prime_UTR	17385409	17385485	.	-	.	Parent=Os09t0459850-00
Chr09	irgsp1_rep	five_prime_UTR	17384970	17385094	.	-	.	Parent=Os09t0459850-00
Chr09	irgsp1_rep	five_prime_UTR	17384434	17384516	.	-	.	Parent=Os09t0459850-00
Chr09	irgsp1_rep	CDS	17384394	17384433	.	-	0	Parent=Os09t0459850-00
Chr09	irgsp1_rep	CDS	17383928	17383996	.	-	2	Parent=Os09t0459850-00
Chr09	irgsp1_rep	CDS	17383677	17383786	.	-	2	Parent=Os09t0459850-00
Chr09	irgsp1_rep	CDS	17383464	17383548	.	-	0	Parent=Os09t0459850-00
Chr09	irgsp1_rep	CDS	17383255	17383313	.	-	2	Parent=Os09t0459850-00
Chr09	irgsp1_rep	three_prime_UTR	17383238	17383254	.	-	.	Parent=Os09t0459850-00
Chr09	irgsp1_rep	three_prime_UTR	17383014	17383133	.	-	.	Parent=Os09t0459850-00
Chr09	irgsp1_rep	three_prime_UTR	17381975	17382170	.	-	.	Parent=Os09t0459850-00
Chr09	irgsp1_rep	three_prime_UTR	17381134	17381231	.	-	.	Parent=Os09t0459850-00
Chr09	irgsp1_rep	three_prime_UTR	17380360	17380433	.	-	.	Parent=Os09t0459850-00
Chr09	irgsp1_rep	three_prime_UTR	17379963	17380069	.	-	.	Parent=Os09t0459850-00
Chr09	irgsp1_rep	three_prime_UTR	17379307	17379527	.	-	.	Parent=Os09t0459850-00
Chr09	irgsp1_rep	three_prime_UTR	17378336	17378467	.	-	.	Parent=Os09t0459850-00
Chr09	irgsp1_rep	three_prime_UTR	17377180	17377384	.	-	.	Parent=Os09t0459850-00
Chr09	irgsp1_rep	mRNA	17391714	17392630	.	-	.	ID=Os09t0459900-01;Name=Os09t0459900-01;Locus_id=Os09g0459900;CGSNL Gene Symbol=KRP6;CGSNL Gene Name=KIP-RELATED PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsiICK4%2C Orysa%3BKRP6%2C OrysaICK4%2C Orysa%3BICK4%2C OsKRP6;Oryzabase Gene Name Synonym(s)=Cyclin-dependent kinase inhibitor 4%2C KIP-related protein 6%2C inhibitor of cyclin-dependent kinase 4;Note=Similar to Cyclin-dependent kinase inhibitor 6.;Transcript_evidence=AK111010 (DDBJ%2C Best hit);ORF_evidence=B9G407 (UniProt);NIAS_FLcDNA=002-174-F09;Oryzabase=12357;Expression=AK111010;TENOR=Os09t0459900-01;KEGG=Os09t0459900-01
Chr09	irgsp1_rep	five_prime_UTR	17392480	17392630	.	-	.	Parent=Os09t0459900-01
Chr09	irgsp1_rep	CDS	17392051	17392479	.	-	0	Parent=Os09t0459900-01
Chr09	irgsp1_rep	three_prime_UTR	17391714	17392050	.	-	.	Parent=Os09t0459900-01
Chr09	irgsp1_rep	mRNA	17390977	17392541	.	-	.	ID=Os09t0459900-02;Name=Os09t0459900-02;Locus_id=Os09g0459900;CGSNL Gene Symbol=KRP6;CGSNL Gene Name=KIP-RELATED PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsiICK4%2C Orysa%3BKRP6%2C OrysaICK4%2C Orysa%3BICK4%2C OsKRP6;Oryzabase Gene Name Synonym(s)=Cyclin-dependent kinase inhibitor 4%2C KIP-related protein 6%2C inhibitor of cyclin-dependent kinase 4;Note=Cyclin-dependent kinase inhibitor family protein.;Transcript_evidence=AK063208 (DDBJ%2C Best hit);ORF_evidence=B9G407 (UniProt);GO=Biological Process: cell cycle arrest (GO:0007050),Cellular Component: nucleus (GO:0005634),Molecular Function: cyclin-dependent protein kinase inhibitor activity (GO:0004861);InterPro=Cyclin-dependent kinase inhibitor (IPR003175);NIAS_FLcDNA=001-112-D03;Oryzabase=12357;Expression=AK063208;TENOR=Os09t0459900-02;KEGG=Os09t0459900-02
Chr09	irgsp1_rep	five_prime_UTR	17392480	17392541	.	-	.	Parent=Os09t0459900-02
Chr09	irgsp1_rep	CDS	17392388	17392479	.	-	0	Parent=Os09t0459900-02
Chr09	irgsp1_rep	CDS	17392207	17392305	.	-	1	Parent=Os09t0459900-02
Chr09	irgsp1_rep	CDS	17391211	17391280	.	-	1	Parent=Os09t0459900-02
Chr09	irgsp1_rep	three_prime_UTR	17390977	17391210	.	-	.	Parent=Os09t0459900-02
Chr09	irgsp1_rep	mRNA	17393611	17395622	.	+	.	ID=Os09t0460000-01;Name=Os09t0460000-01;Locus_id=Os09g0460000;Oryzabase Gene Symbol Synonym(s)=OsDjC68;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C68;Note=Heat shock protein DnaJ%2C N-terminal domain containing protein.;Transcript_evidence=AK101876 (DDBJ%2C Best hit);ORF_evidence=NP_001151144.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Zinc finger%2C DPH-type (IPR007872);NIAS_FLcDNA=J033070H16;Oryzabase=12225;Expression=AK101876;TENOR=Os09t0460000-01;KEGG=Os09t0460000-01
Chr09	irgsp1_rep	five_prime_UTR	17393611	17393842	.	+	.	Parent=Os09t0460000-01
Chr09	irgsp1_rep	five_prime_UTR	17394759	17394779	.	+	.	Parent=Os09t0460000-01
Chr09	irgsp1_rep	CDS	17394780	17395301	.	+	0	Parent=Os09t0460000-01
Chr09	irgsp1_rep	three_prime_UTR	17395302	17395622	.	+	.	Parent=Os09t0460000-01
Chr09	irgsp1_rep	mRNA	17399884	17401177	.	+	.	ID=Os09t0460100-01;Name=Os09t0460100-01;Locus_id=Os09g0460100;Note=Conserved hypothetical protein.;Transcript_evidence=AK241798 (DDBJ%2C Best hit);ORF_evidence=NP_001063386.1 (RefSeq);NIAS_FLcDNA=J065208G04;TENOR=Os09t0460100-01;KEGG=Os09t0460100-01
Chr09	irgsp1_rep	five_prime_UTR	17399884	17400032	.	+	.	Parent=Os09t0460100-01
Chr09	irgsp1_rep	CDS	17400033	17400230	.	+	0	Parent=Os09t0460100-01
Chr09	irgsp1_rep	CDS	17400362	17400886	.	+	0	Parent=Os09t0460100-01
Chr09	irgsp1_rep	three_prime_UTR	17400887	17401177	.	+	.	Parent=Os09t0460100-01
Chr09	irgsp1_rep	mRNA	17404318	17412968	.	+	.	ID=Os09t0460200-00;Name=Os09t0460200-00;Locus_id=Os09g0460200;Note=Similar to Transport protein.;Transcript_evidence=BT033606 (DDBJ);ORF_evidence=O23275 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888),Cellular Component: COPII vesicle coat (GO:0030127),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C Sec23/Sec24-type (IPR006895),Sec23/Sec24%2C trunk domain (IPR006896),Sec23/Sec24 beta-sandwich (IPR012990);TENOR=Os09t0460200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	17404318	17404621	.	+	0	Parent=Os09t0460200-00
Chr09	irgsp1_rep	CDS	17406891	17407270	.	+	2	Parent=Os09t0460200-00
Chr09	irgsp1_rep	CDS	17407360	17407575	.	+	0	Parent=Os09t0460200-00
Chr09	irgsp1_rep	CDS	17407687	17407860	.	+	0	Parent=Os09t0460200-00
Chr09	irgsp1_rep	CDS	17408320	17408481	.	+	0	Parent=Os09t0460200-00
Chr09	irgsp1_rep	CDS	17408649	17408791	.	+	0	Parent=Os09t0460200-00
Chr09	irgsp1_rep	CDS	17409486	17409561	.	+	1	Parent=Os09t0460200-00
Chr09	irgsp1_rep	CDS	17410096	17410271	.	+	0	Parent=Os09t0460200-00
Chr09	irgsp1_rep	CDS	17410361	17410446	.	+	1	Parent=Os09t0460200-00
Chr09	irgsp1_rep	CDS	17410655	17410671	.	+	2	Parent=Os09t0460200-00
Chr09	irgsp1_rep	three_prime_UTR	17410672	17410729	.	+	.	Parent=Os09t0460200-00
Chr09	irgsp1_rep	three_prime_UTR	17411804	17411965	.	+	.	Parent=Os09t0460200-00
Chr09	irgsp1_rep	three_prime_UTR	17412057	17412320	.	+	.	Parent=Os09t0460200-00
Chr09	irgsp1_rep	three_prime_UTR	17412580	17412684	.	+	.	Parent=Os09t0460200-00
Chr09	irgsp1_rep	three_prime_UTR	17412809	17412968	.	+	.	Parent=Os09t0460200-00
Chr09	irgsp1_rep	mRNA	17405811	17413209	.	-	.	ID=Os09t0460250-01;Name=Os09t0460250-01;Locus_id=Os09g0460250;Note=Hypothetical gene.;Transcript_evidence=AK240749 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J043039O10;TENOR=Os09t0460250-01;KEGG=Os09t0460250-01
Chr09	irgsp1_rep	five_prime_UTR	17412809	17413209	.	-	.	Parent=Os09t0460250-01
Chr09	irgsp1_rep	five_prime_UTR	17412580	17412684	.	-	.	Parent=Os09t0460250-01
Chr09	irgsp1_rep	five_prime_UTR	17412057	17412320	.	-	.	Parent=Os09t0460250-01
Chr09	irgsp1_rep	five_prime_UTR	17411804	17411965	.	-	.	Parent=Os09t0460250-01
Chr09	irgsp1_rep	five_prime_UTR	17410361	17410729	.	-	.	Parent=Os09t0460250-01
Chr09	irgsp1_rep	five_prime_UTR	17410096	17410271	.	-	.	Parent=Os09t0460250-01
Chr09	irgsp1_rep	five_prime_UTR	17409486	17409561	.	-	.	Parent=Os09t0460250-01
Chr09	irgsp1_rep	five_prime_UTR	17408649	17408791	.	-	.	Parent=Os09t0460250-01
Chr09	irgsp1_rep	five_prime_UTR	17407687	17408481	.	-	.	Parent=Os09t0460250-01
Chr09	irgsp1_rep	five_prime_UTR	17407360	17407555	.	-	.	Parent=Os09t0460250-01
Chr09	irgsp1_rep	five_prime_UTR	17407034	17407270	.	-	.	Parent=Os09t0460250-01
Chr09	irgsp1_rep	CDS	17406705	17407033	.	-	0	Parent=Os09t0460250-01
Chr09	irgsp1_rep	CDS	17405932	17405935	.	-	1	Parent=Os09t0460250-01
Chr09	irgsp1_rep	three_prime_UTR	17405811	17405931	.	-	.	Parent=Os09t0460250-01
Chr09	irgsp1_rep	mRNA	17414087	17415604	.	+	.	ID=Os09t0460300-01;Name=Os09t0460300-01;Locus_id=Os09g0460300;Note=Alpha/beta hydrolase fold-3 domain containing protein.;Transcript_evidence=AK071569 (DDBJ%2C Best hit),AK070294 (DDBJ%2C Best hit);ORF_evidence=B6T2X8 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Lipase%2C GDXG%2C active site (IPR002168),Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=J023102G04,J023050O07;Expression=AK071569;TENOR=Os09t0460300-01;KEGG=Os09t0460300-01
Chr09	irgsp1_rep	five_prime_UTR	17414087	17414109	.	+	.	Parent=Os09t0460300-01
Chr09	irgsp1_rep	CDS	17414110	17415273	.	+	0	Parent=Os09t0460300-01
Chr09	irgsp1_rep	three_prime_UTR	17415274	17415604	.	+	.	Parent=Os09t0460300-01
Chr09	irgsp1_rep	mRNA	17417193	17418299	.	-	.	ID=Os09t0460350-01;Name=Os09t0460350-01;Locus_id=Os09g0460350;Note=Hypothetical conserved gene.;Transcript_evidence=AK073449 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033044C15;Expression=AK073449;TENOR=Os09t0460350-01;KEGG=Os09t0460350-01
Chr09	irgsp1_rep	five_prime_UTR	17418299	17418299	.	-	.	Parent=Os09t0460350-01
Chr09	irgsp1_rep	CDS	17417954	17418298	.	-	0	Parent=Os09t0460350-01
Chr09	irgsp1_rep	three_prime_UTR	17417193	17417953	.	-	.	Parent=Os09t0460350-01
Chr09	irgsp1_rep	mRNA	17417341	17418456	.	+	.	ID=Os09t0460400-01;Name=Os09t0460400-01;Locus_id=Os09g0460400;Note=Alpha/beta hydrolase fold-3 domain containing protein.;Transcript_evidence=AK067180 (DDBJ%2C Best hit);ORF_evidence=B6T2X8 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Lipase%2C GDXG%2C active site (IPR002168),Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=J013094M19;Expression=AK067180;TENOR=Os09t0460400-01;KEGG=Os09t0460400-01
Chr09	irgsp1_rep	five_prime_UTR	17417341	17417401	.	+	.	Parent=Os09t0460400-01
Chr09	irgsp1_rep	CDS	17417402	17418349	.	+	0	Parent=Os09t0460400-01
Chr09	irgsp1_rep	three_prime_UTR	17418350	17418456	.	+	.	Parent=Os09t0460400-01
Chr09	irgsp1_rep	mRNA	17421207	17422414	.	+	.	ID=Os09t0460500-00;Name=Os09t0460500-00;Locus_id=Os09g0460500;Note=Lipase%2C GDXG%2C active site domain containing protein.;Transcript_evidence=CT837587 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Lipase%2C GDXG%2C active site (IPR002168),Alpha/beta hydrolase fold-3 (IPR013094);TENOR=Os09t0460500-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	17421207	17422148	.	+	0	Parent=Os09t0460500-00
Chr09	irgsp1_rep	three_prime_UTR	17422149	17422414	.	+	.	Parent=Os09t0460500-00
Chr09	irgsp1_rep	mRNA	17424564	17425622	.	+	.	ID=Os09t0460700-01;Name=Os09t0460700-01;Locus_id=Os09g0460700;Note=Alpha/beta hydrolase fold-3 domain containing protein.;Transcript_evidence=AK108359 (DDBJ%2C Best hit);ORF_evidence=B6T2X8 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Lipase%2C GDXG%2C active site (IPR002168),Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=002-142-C08;Expression=AK108359;TENOR=Os09t0460700-01;KEGG=Os09t0460700-01
Chr09	irgsp1_rep	five_prime_UTR	17424564	17424585	.	+	.	Parent=Os09t0460700-01
Chr09	irgsp1_rep	CDS	17424586	17425524	.	+	0	Parent=Os09t0460700-01
Chr09	irgsp1_rep	three_prime_UTR	17425525	17425622	.	+	.	Parent=Os09t0460700-01
Chr09	irgsp1_rep	mRNA	17448346	17449590	.	-	.	ID=Os09t0461500-01;Name=Os09t0461500-01;Locus_id=Os09g0461500;Note=Alpha/beta hydrolase fold-3 domain containing protein.;Transcript_evidence=AK063400 (DDBJ%2C Best hit),AK102328 (DDBJ%2C Best hit);ORF_evidence=NP_001152298.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Lipase%2C GDXG%2C active site (IPR002168),Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=001-115-A02,J033090L22;Expression=AK063400;TENOR=Os09t0461500-01;KEGG=Os09t0461500-01
Chr09	irgsp1_rep	five_prime_UTR	17449478	17449590	.	-	.	Parent=Os09t0461500-01
Chr09	irgsp1_rep	CDS	17448431	17449477	.	-	0	Parent=Os09t0461500-01
Chr09	irgsp1_rep	three_prime_UTR	17448346	17448430	.	-	.	Parent=Os09t0461500-01
Chr09	irgsp1_rep	mRNA	17458996	17460307	.	+	.	ID=Os09t0461700-01;Name=Os09t0461700-01;Locus_id=Os09g0461700;Note=Alpha/beta hydrolase fold-3 domain containing protein.;Transcript_evidence=AK066139 (DDBJ%2C Best hit);ORF_evidence=NP_001148840.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=J013054P13;Expression=AK066139;TENOR=Os09t0461700-01;KEGG=Os09t0461700-01
Chr09	irgsp1_rep	five_prime_UTR	17458996	17459083	.	+	.	Parent=Os09t0461700-01
Chr09	irgsp1_rep	CDS	17459084	17460043	.	+	0	Parent=Os09t0461700-01
Chr09	irgsp1_rep	three_prime_UTR	17460044	17460307	.	+	.	Parent=Os09t0461700-01
Chr09	irgsp1_rep	mRNA	17460792	17462020	.	-	.	ID=Os09t0461900-01;Name=Os09t0461900-01;Locus_id=Os09g0461900;Note=Alpha/beta hydrolase fold-3 domain containing protein.;Transcript_evidence=AK062676 (DDBJ%2C Best hit);ORF_evidence=NP_001150146.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=001-105-G12;Expression=AK062676;TENOR=Os09t0461900-01;KEGG=Os09t0461900-01
Chr09	irgsp1_rep	five_prime_UTR	17461930	17462020	.	-	.	Parent=Os09t0461900-01
Chr09	irgsp1_rep	CDS	17460964	17461929	.	-	0	Parent=Os09t0461900-01
Chr09	irgsp1_rep	three_prime_UTR	17460792	17460963	.	-	.	Parent=Os09t0461900-01
Chr09	irgsp1_rep	mRNA	17466913	17468488	.	-	.	ID=Os09t0462000-01;Name=Os09t0462000-01;Locus_id=Os09g0462000;Note=Hypothetical protein.;Transcript_evidence=AK063390 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-114-H01;TENOR=Os09t0462000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	17468488	17468488	.	-	.	Parent=Os09t0462000-01
Chr09	irgsp1_rep	CDS	17467645	17468487	.	-	0	Parent=Os09t0462000-01
Chr09	irgsp1_rep	three_prime_UTR	17466913	17467644	.	-	.	Parent=Os09t0462000-01
Chr09	irgsp1_rep	mRNA	17467119	17468640	.	+	.	ID=Os09t0462100-01;Name=Os09t0462100-01;Locus_id=Os09g0462100;Note=Alpha/beta hydrolase fold-3 domain containing protein.;Transcript_evidence=AK105811 (DDBJ%2C Best hit),AK120686 (DDBJ%2C Best hit);ORF_evidence=NP_001151232.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Lipase%2C GDXG%2C active site (IPR002168),Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=001-203-C02,J013168D07;Expression=AK105811;TENOR=Os09t0462100-01;KEGG=Os09t0462100-01
Chr09	irgsp1_rep	five_prime_UTR	17467119	17467296	.	+	.	Parent=Os09t0462100-01
Chr09	irgsp1_rep	CDS	17467297	17468439	.	+	0	Parent=Os09t0462100-01
Chr09	irgsp1_rep	three_prime_UTR	17468440	17468640	.	+	.	Parent=Os09t0462100-01
Chr09	irgsp1_rep	mRNA	17471048	17472209	.	-	.	ID=Os09t0462200-01;Name=Os09t0462200-01;Locus_id=Os09g0462200;Note=Alpha/beta hydrolase fold-3 domain containing protein.;Transcript_evidence=AK064734 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=002-120-C05;TENOR=Os09t0462200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	17471199	17472209	.	-	0	Parent=Os09t0462200-01
Chr09	irgsp1_rep	three_prime_UTR	17471048	17471198	.	-	.	Parent=Os09t0462200-01
Chr09	irgsp1_rep	mRNA	17472458	17473664	.	-	.	ID=Os09t0462301-01;Name=Os09t0462301-01;Locus_id=Os09g0462301;Note=Hypothetical gene.;Transcript_evidence=AK241133 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065097M23;TENOR=Os09t0462301-01;KEGG=Os09t0462301-01
Chr09	irgsp1_rep	five_prime_UTR	17473105	17473664	.	-	.	Parent=Os09t0462301-01
Chr09	irgsp1_rep	CDS	17472469	17473104	.	-	0	Parent=Os09t0462301-01
Chr09	irgsp1_rep	three_prime_UTR	17472458	17472468	.	-	.	Parent=Os09t0462301-01
Chr09	irgsp1_rep	mRNA	17477528	17479148	.	+	.	ID=Os09t0462400-00;Name=Os09t0462400-00;Locus_id=Os09g0462400;Oryzabase Gene Symbol Synonym(s)=OspPLAIIeta%2C pPLAIIeta;Oryzabase Gene Name Synonym(s)=Patatin-related phospholipase A II eta;Note=Similar to Patatin-like protein.;Transcript_evidence=FP094720 (DDBJ);ORF_evidence=Q29VI1 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: metabolic process (GO:0008152);InterPro=Patatin/Phospholipase A2-related (IPR002641),Acyl transferase/acyl hydrolase/lysophospholipase (IPR016035);Oryzabase=19866;TENOR=Os09t0462400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	17477528	17477718	.	+	0	Parent=Os09t0462400-00
Chr09	irgsp1_rep	CDS	17477796	17477982	.	+	1	Parent=Os09t0462400-00
Chr09	irgsp1_rep	CDS	17478259	17478420	.	+	0	Parent=Os09t0462400-00
Chr09	irgsp1_rep	CDS	17478566	17478868	.	+	0	Parent=Os09t0462400-00
Chr09	irgsp1_rep	CDS	17478963	17479148	.	+	0	Parent=Os09t0462400-00
Chr09	irgsp1_rep	mRNA	17498683	17503056	.	-	.	ID=Os09t0462550-01;Name=Os09t0462550-01;Locus_id=Os09g0462550;Note=Hypothetical gene.;Transcript_evidence=AK288751 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090065G08;TENOR=Os09t0462550-01;KEGG=Os09t0462550-01
Chr09	irgsp1_rep	five_prime_UTR	17502570	17503056	.	-	.	Parent=Os09t0462550-01
Chr09	irgsp1_rep	CDS	17502201	17502569	.	-	0	Parent=Os09t0462550-01
Chr09	irgsp1_rep	three_prime_UTR	17498683	17502200	.	-	.	Parent=Os09t0462550-01
Chr09	irgsp1_rep	mRNA	17498805	17503038	.	+	.	ID=Os09t0462700-01;Name=Os09t0462700-01;Locus_id=Os09g0462700;Note=Similar to RNA Binding Protein 47.;Transcript_evidence=AK067260 (DDBJ%2C Best hit);ORF_evidence=B7E560 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013096N13;Expression=AK067260;TENOR=Os09t0462700-01;KEGG=Os09t0462700-01
Chr09	irgsp1_rep	five_prime_UTR	17498805	17498805	.	+	.	Parent=Os09t0462700-01
Chr09	irgsp1_rep	CDS	17498806	17499124	.	+	0	Parent=Os09t0462700-01
Chr09	irgsp1_rep	CDS	17499216	17499316	.	+	2	Parent=Os09t0462700-01
Chr09	irgsp1_rep	CDS	17500625	17501078	.	+	0	Parent=Os09t0462700-01
Chr09	irgsp1_rep	CDS	17502018	17502076	.	+	2	Parent=Os09t0462700-01
Chr09	irgsp1_rep	CDS	17502158	17502288	.	+	0	Parent=Os09t0462700-01
Chr09	irgsp1_rep	CDS	17502388	17502484	.	+	1	Parent=Os09t0462700-01
Chr09	irgsp1_rep	CDS	17502587	17502751	.	+	0	Parent=Os09t0462700-01
Chr09	irgsp1_rep	three_prime_UTR	17502752	17503038	.	+	.	Parent=Os09t0462700-01
Chr09	irgsp1_rep	mRNA	17499163	17503035	.	+	.	ID=Os09t0462700-02;Name=Os09t0462700-02;Locus_id=Os09g0462700;Note=Similar to H0818E04.14 protein.;Transcript_evidence=AK060597 (DDBJ%2C Best hit);ORF_evidence=Q01JG9 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-024-G08;Expression=AK060597;TENOR=Os09t0462700-02;KEGG=Os09t0462700-02
Chr09	irgsp1_rep	five_prime_UTR	17499163	17499163	.	+	.	Parent=Os09t0462700-02
Chr09	irgsp1_rep	CDS	17499164	17499316	.	+	0	Parent=Os09t0462700-02
Chr09	irgsp1_rep	CDS	17500625	17501078	.	+	0	Parent=Os09t0462700-02
Chr09	irgsp1_rep	CDS	17502018	17502076	.	+	2	Parent=Os09t0462700-02
Chr09	irgsp1_rep	CDS	17502158	17502288	.	+	0	Parent=Os09t0462700-02
Chr09	irgsp1_rep	CDS	17502388	17502484	.	+	1	Parent=Os09t0462700-02
Chr09	irgsp1_rep	CDS	17502587	17502751	.	+	0	Parent=Os09t0462700-02
Chr09	irgsp1_rep	three_prime_UTR	17502752	17503035	.	+	.	Parent=Os09t0462700-02
Chr09	irgsp1_rep	mRNA	17504057	17504523	.	+	.	ID=Os09t0462850-00;Name=Os09t0462850-00;Locus_id=Os09g0462850;Note=Hypothetical gene.;Transcript_evidence=CT835885 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os09t0462850-00;KEGG=Os09t0462850-00
Chr09	irgsp1_rep	CDS	17504057	17504146	.	+	0	Parent=Os09t0462850-00
Chr09	irgsp1_rep	CDS	17504158	17504313	.	+	0	Parent=Os09t0462850-00
Chr09	irgsp1_rep	three_prime_UTR	17504314	17504523	.	+	.	Parent=Os09t0462850-00
Chr09	irgsp1_rep	mRNA	17506089	17509560	.	-	.	ID=Os09t0462875-00;Name=Os09t0462875-00;Locus_id=Os09g0462875;CGSNL Gene Symbol=SCP42;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 42;Oryzabase Gene Symbol Synonym(s)=OsSCP42;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 42;Note=Peptidase S10%2C serine carboxypeptidase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2Z241 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);Oryzabase=19221;TENOR=Os09t0462875-00
Chr09	irgsp1_rep	CDS	17509485	17509560	.	-	0	Parent=Os09t0462875-00
Chr09	irgsp1_rep	CDS	17508838	17509112	.	-	2	Parent=Os09t0462875-00
Chr09	irgsp1_rep	CDS	17507681	17507881	.	-	0	Parent=Os09t0462875-00
Chr09	irgsp1_rep	CDS	17507433	17507539	.	-	0	Parent=Os09t0462875-00
Chr09	irgsp1_rep	CDS	17506625	17506730	.	-	1	Parent=Os09t0462875-00
Chr09	irgsp1_rep	CDS	17506386	17506537	.	-	0	Parent=Os09t0462875-00
Chr09	irgsp1_rep	CDS	17506089	17506248	.	-	1	Parent=Os09t0462875-00
Chr09	irgsp1_rep	mRNA	17513423	17515718	.	-	.	ID=Os09t0463100-01;Name=Os09t0463100-01;Locus_id=Os09g0463100;CGSNL Gene Symbol=SCP43;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 43;Oryzabase Gene Symbol Synonym(s)=OsSCP43;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 43;Note=Hypothetical conserved gene.;Transcript_evidence=AK241583 (DDBJ%2C Best hit);ORF_evidence=B8BCM2 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563);NIAS_FLcDNA=J065181O06;Oryzabase=19222;TENOR=Os09t0463100-01;KEGG=Os09t0463100-01 (EC:3.4.16.6)
Chr09	irgsp1_rep	five_prime_UTR	17515413	17515718	.	-	.	Parent=Os09t0463100-01
Chr09	irgsp1_rep	CDS	17515242	17515412	.	-	0	Parent=Os09t0463100-01
Chr09	irgsp1_rep	CDS	17514632	17514877	.	-	0	Parent=Os09t0463100-01
Chr09	irgsp1_rep	CDS	17514400	17514513	.	-	0	Parent=Os09t0463100-01
Chr09	irgsp1_rep	three_prime_UTR	17514075	17514399	.	-	.	Parent=Os09t0463100-01
Chr09	irgsp1_rep	three_prime_UTR	17513423	17513986	.	-	.	Parent=Os09t0463100-01
Chr09	irgsp1_rep	mRNA	17513634	17514876	.	+	.	ID=Os09t0463166-00;Name=Os09t0463166-00;Locus_id=Os09g0463166;Note=Non-protein coding transcript.;Transcript_evidence=BT019274 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0463166-00
Chr09	irgsp1_rep	exon	17513634	17513784	.	+	.	Parent=Os09t0463166-00
Chr09	irgsp1_rep	exon	17513883	17513986	.	+	.	Parent=Os09t0463166-00
Chr09	irgsp1_rep	exon	17514075	17514182	.	+	.	Parent=Os09t0463166-00
Chr09	irgsp1_rep	exon	17514429	17514509	.	+	.	Parent=Os09t0463166-00
Chr09	irgsp1_rep	exon	17514620	17514876	.	+	.	Parent=Os09t0463166-00
Chr09	irgsp1_rep	mRNA	17533362	17536199	.	-	.	ID=Os09t0463232-00;Name=Os09t0463232-00;Locus_id=Os09g0463232;Note=Hypothetical gene.;Transcript_evidence=AK249621 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0463232-00;KEGG=Os09t0463232-00
Chr09	irgsp1_rep	five_prime_UTR	17533770	17536199	.	-	.	Parent=Os09t0463232-00
Chr09	irgsp1_rep	CDS	17533587	17533769	.	-	0	Parent=Os09t0463232-00
Chr09	irgsp1_rep	CDS	17533412	17533531	.	-	0	Parent=Os09t0463232-00
Chr09	irgsp1_rep	three_prime_UTR	17533362	17533411	.	-	.	Parent=Os09t0463232-00
Chr09	irgsp1_rep	mRNA	17534414	17537800	.	+	.	ID=Os09t0463300-01;Name=Os09t0463300-01;Locus_id=Os09g0463300;Note=Domain of unknown function DUF547 domain containing protein.;Transcript_evidence=AK068942 (DDBJ%2C Best hit);ORF_evidence=B9G414 (UniProt);InterPro=Domain of unknown function DUF547 (IPR006869);NIAS_FLcDNA=J013170B09;TENOR=Os09t0463300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	17534414	17534468	.	+	.	Parent=Os09t0463300-01
Chr09	irgsp1_rep	CDS	17534469	17534651	.	+	0	Parent=Os09t0463300-01
Chr09	irgsp1_rep	CDS	17534751	17534867	.	+	0	Parent=Os09t0463300-01
Chr09	irgsp1_rep	CDS	17534989	17535438	.	+	0	Parent=Os09t0463300-01
Chr09	irgsp1_rep	CDS	17535558	17535925	.	+	0	Parent=Os09t0463300-01
Chr09	irgsp1_rep	CDS	17536059	17536158	.	+	1	Parent=Os09t0463300-01
Chr09	irgsp1_rep	CDS	17536736	17536795	.	+	0	Parent=Os09t0463300-01
Chr09	irgsp1_rep	CDS	17536911	17536994	.	+	0	Parent=Os09t0463300-01
Chr09	irgsp1_rep	CDS	17537124	17537249	.	+	0	Parent=Os09t0463300-01
Chr09	irgsp1_rep	CDS	17537369	17537677	.	+	0	Parent=Os09t0463300-01
Chr09	irgsp1_rep	three_prime_UTR	17537678	17537800	.	+	.	Parent=Os09t0463300-01
Chr09	irgsp1_rep	mRNA	17535030	17537818	.	+	.	ID=Os09t0463300-02;Name=Os09t0463300-02;Locus_id=Os09g0463300;Note=Hypothetical conserved gene.;Transcript_evidence=AK060628 (DDBJ%2C Best hit);ORF_evidence=B9G414 (UniProt);InterPro=Domain of unknown function DUF547 (IPR006869);NIAS_FLcDNA=001-026-H04;Expression=AK060628;TENOR=Os09t0463300-02;KEGG=Os09t0463300-02
Chr09	irgsp1_rep	five_prime_UTR	17535030	17535030	.	+	.	Parent=Os09t0463300-02
Chr09	irgsp1_rep	CDS	17535031	17535438	.	+	0	Parent=Os09t0463300-02
Chr09	irgsp1_rep	CDS	17535558	17535925	.	+	0	Parent=Os09t0463300-02
Chr09	irgsp1_rep	CDS	17536059	17536158	.	+	1	Parent=Os09t0463300-02
Chr09	irgsp1_rep	CDS	17536736	17536795	.	+	0	Parent=Os09t0463300-02
Chr09	irgsp1_rep	CDS	17536911	17536994	.	+	0	Parent=Os09t0463300-02
Chr09	irgsp1_rep	CDS	17537124	17537249	.	+	0	Parent=Os09t0463300-02
Chr09	irgsp1_rep	CDS	17537369	17537677	.	+	0	Parent=Os09t0463300-02
Chr09	irgsp1_rep	three_prime_UTR	17537678	17537818	.	+	.	Parent=Os09t0463300-02
Chr09	irgsp1_rep	mRNA	17550269	17553889	.	+	.	ID=Os09t0463600-02;Name=Os09t0463600-02;Locus_id=Os09g0463600;Note=Protein of unknown function DUF617%2C plant family protein.;Transcript_evidence=AK121134 (DDBJ%2C Best hit),AK072780 (DDBJ%2C Best hit);ORF_evidence=NP_001151676.1 (RefSeq);InterPro=Protein of unknown function DUF617%2C plant (IPR006460);NIAS_FLcDNA=J023076J04,J023139I23;Expression=AK121134;TENOR=Os09t0463600-02;KEGG=Os09t0463600-02
Chr09	irgsp1_rep	five_prime_UTR	17550269	17550325	.	+	.	Parent=Os09t0463600-02
Chr09	irgsp1_rep	CDS	17550326	17551060	.	+	0	Parent=Os09t0463600-02
Chr09	irgsp1_rep	three_prime_UTR	17551061	17553889	.	+	.	Parent=Os09t0463600-02
Chr09	irgsp1_rep	mRNA	17556989	17558591	.	+	.	ID=Os09t0463700-01;Name=Os09t0463700-01;Locus_id=Os09g0463700;Oryzabase Gene Symbol Synonym(s)=OsDjC69;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C69;Note=Similar to AHM1.;Transcript_evidence=AK060708 (DDBJ%2C Best hit);ORF_evidence=Q9SLR6 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: heat shock protein binding (GO:0031072);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),AT hook%2C DNA-binding motif (IPR017956);NIAS_FLcDNA=001-030-H09;Oryzabase=12226;Expression=AK060708;TENOR=Os09t0463700-01;KEGG=Os09t0463700-01
Chr09	irgsp1_rep	five_prime_UTR	17556989	17557037	.	+	.	Parent=Os09t0463700-01
Chr09	irgsp1_rep	CDS	17557038	17558156	.	+	0	Parent=Os09t0463700-01
Chr09	irgsp1_rep	three_prime_UTR	17558157	17558591	.	+	.	Parent=Os09t0463700-01
Chr09	irgsp1_rep	mRNA	17562764	17563358	.	+	.	ID=Os09t0463800-01;Name=Os09t0463800-01;Locus_id=Os09g0463800;Note=Conserved hypothetical protein.;Transcript_evidence=AK109254 (DDBJ%2C Best hit);ORF_evidence=Q5ZCU9 (UniProt);NIAS_FLcDNA=002-185-A04;TENOR=Os09t0463800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	17562764	17562764	.	+	.	Parent=Os09t0463800-01
Chr09	irgsp1_rep	CDS	17562765	17563076	.	+	0	Parent=Os09t0463800-01
Chr09	irgsp1_rep	three_prime_UTR	17563077	17563358	.	+	.	Parent=Os09t0463800-01
Chr09	irgsp1_rep	mRNA	17565471	17566268	.	+	.	ID=Os09t0463900-00;Name=Os09t0463900-00;Locus_id=Os09g0463900;Oryzabase Gene Symbol Synonym(s)=OsbHLH043;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 043;Note=Similar to DNA binding protein.;Transcript_evidence=BT042438 (DDBJ);ORF_evidence=NP_001150998.1 (RefSeq);InterPro=Helix-loop-helix DNA-binding (IPR011598);Oryzabase=15334;TENOR=Os09t0463900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	17565471	17566268	.	+	0	Parent=Os09t0463900-00
Chr09	irgsp1_rep	mRNA	17567637	17571539	.	-	.	ID=Os09t0464000-01;Name=Os09t0464000-01;Locus_id=Os09g0464000;CGSNL Gene Symbol=BETACA2;CGSNL Gene Name=BETA-CARBONIC ANHYDRASE 2;Oryzabase Gene Symbol Synonym(s)=OsbetaCA2%2C betaCA2;Oryzabase Gene Name Synonym(s)=beta-carbonic anhydrase 2;Note=Similar to Carbonate dehydratase-like protein.;Transcript_evidence=AK069530 (DDBJ%2C Best hit);ORF_evidence=B8BCM5 (UniProt);GO=Biological Process: carbon utilization (GO:0015976),Molecular Function: carbonate dehydratase activity (GO:0004089),Molecular Function: zinc ion binding (GO:0008270);InterPro=Carbonic anhydrase (IPR001765),Carbonic anhydrase%2C prokaryotic-like%2C conserved site (IPR015892);NIAS_FLcDNA=J023022G09;Oryzabase=21645;Expression=AK069530;TENOR=Os09t0464000-01;KEGG=Os09t0464000-01 (EC:4.2.1.1)
Chr09	irgsp1_rep	five_prime_UTR	17571349	17571539	.	-	.	Parent=Os09t0464000-01
Chr09	irgsp1_rep	CDS	17571256	17571348	.	-	0	Parent=Os09t0464000-01
Chr09	irgsp1_rep	CDS	17571111	17571163	.	-	0	Parent=Os09t0464000-01
Chr09	irgsp1_rep	CDS	17570255	17570416	.	-	1	Parent=Os09t0464000-01
Chr09	irgsp1_rep	CDS	17570131	17570179	.	-	1	Parent=Os09t0464000-01
Chr09	irgsp1_rep	CDS	17569928	17570041	.	-	0	Parent=Os09t0464000-01
Chr09	irgsp1_rep	CDS	17569786	17569840	.	-	0	Parent=Os09t0464000-01
Chr09	irgsp1_rep	CDS	17569573	17569663	.	-	2	Parent=Os09t0464000-01
Chr09	irgsp1_rep	CDS	17569383	17569488	.	-	1	Parent=Os09t0464000-01
Chr09	irgsp1_rep	CDS	17568273	17568470	.	-	0	Parent=Os09t0464000-01
Chr09	irgsp1_rep	three_prime_UTR	17567637	17568272	.	-	.	Parent=Os09t0464000-01
Chr09	irgsp1_rep	mRNA	17567735	17571410	.	-	.	ID=Os09t0464000-02;Name=Os09t0464000-02;Locus_id=Os09g0464000;CGSNL Gene Symbol=BETACA2;CGSNL Gene Name=BETA-CARBONIC ANHYDRASE 2;Oryzabase Gene Symbol Synonym(s)=OsbetaCA2%2C betaCA2;Oryzabase Gene Name Synonym(s)=beta-carbonic anhydrase 2;Note=Similar to Carbonate dehydratase-like protein.;Transcript_evidence=AK060777 (DDBJ%2C Best hit);ORF_evidence=B8BCM5 (UniProt);GO=Biological Process: carbon utilization (GO:0015976),Molecular Function: carbonate dehydratase activity (GO:0004089),Molecular Function: zinc ion binding (GO:0008270);InterPro=Carbonic anhydrase (IPR001765),Carbonic anhydrase%2C prokaryotic-like%2C conserved site (IPR015892);NIAS_FLcDNA=001-033-C01;Oryzabase=21645;Expression=AK060777;TENOR=Os09t0464000-02;KEGG=Os09t0464000-02 (EC:4.2.1.1)
Chr09	irgsp1_rep	five_prime_UTR	17571349	17571410	.	-	.	Parent=Os09t0464000-02
Chr09	irgsp1_rep	CDS	17571256	17571348	.	-	0	Parent=Os09t0464000-02
Chr09	irgsp1_rep	CDS	17571111	17571163	.	-	0	Parent=Os09t0464000-02
Chr09	irgsp1_rep	CDS	17570255	17570416	.	-	1	Parent=Os09t0464000-02
Chr09	irgsp1_rep	CDS	17570131	17570179	.	-	1	Parent=Os09t0464000-02
Chr09	irgsp1_rep	CDS	17569928	17570041	.	-	0	Parent=Os09t0464000-02
Chr09	irgsp1_rep	CDS	17569786	17569840	.	-	0	Parent=Os09t0464000-02
Chr09	irgsp1_rep	CDS	17569573	17569663	.	-	2	Parent=Os09t0464000-02
Chr09	irgsp1_rep	CDS	17569383	17569488	.	-	1	Parent=Os09t0464000-02
Chr09	irgsp1_rep	CDS	17568273	17568470	.	-	0	Parent=Os09t0464000-02
Chr09	irgsp1_rep	three_prime_UTR	17567735	17568272	.	-	.	Parent=Os09t0464000-02
Chr09	irgsp1_rep	mRNA	17567842	17571645	.	+	.	ID=Os09t0464033-01;Name=Os09t0464033-01;Locus_id=Os09g0464033;Note=Hypothetical gene.;Transcript_evidence=AK289051 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090092O18;TENOR=Os09t0464033-01;KEGG=Os09t0464033-01
Chr09	irgsp1_rep	five_prime_UTR	17567842	17570680	.	+	.	Parent=Os09t0464033-01
Chr09	irgsp1_rep	CDS	17570681	17570929	.	+	0	Parent=Os09t0464033-01
Chr09	irgsp1_rep	three_prime_UTR	17570930	17571645	.	+	.	Parent=Os09t0464033-01
Chr09	irgsp1_rep	mRNA	17571821	17572267	.	+	.	ID=Os09t0464066-00;Name=Os09t0464066-00;Locus_id=Os09g0464066;Note=Hypothetical protein.;Transcript_evidence=CT835881 (DDBJ%2C Best hit);ORF_evidence=GeneMark;TENOR=Os09t0464066-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	17571821	17571862	.	+	.	Parent=Os09t0464066-00
Chr09	irgsp1_rep	CDS	17571863	17572090	.	+	0	Parent=Os09t0464066-00
Chr09	irgsp1_rep	three_prime_UTR	17572091	17572267	.	+	.	Parent=Os09t0464066-00
Chr09	irgsp1_rep	mRNA	17577512	17578917	.	-	.	ID=Os09t0464100-01;Name=Os09t0464100-01;Locus_id=Os09g0464100;Note=Conserved hypothetical protein.;Transcript_evidence=AK101751 (DDBJ%2C Best hit);ORF_evidence=Q650W5 (UniProt);NIAS_FLcDNA=J033063C19;TENOR=Os09t0464100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	17578419	17578917	.	-	.	Parent=Os09t0464100-01
Chr09	irgsp1_rep	CDS	17578149	17578418	.	-	0	Parent=Os09t0464100-01
Chr09	irgsp1_rep	three_prime_UTR	17577512	17578148	.	-	.	Parent=Os09t0464100-01
Chr09	irgsp1_rep	mRNA	17588153	17589518	.	-	.	ID=Os09t0464300-00;Name=Os09t0464300-00;Locus_id=Os09g0464300;Note=Similar to DNA-binding protein.;Transcript_evidence=EU975507 (DDBJ);ORF_evidence=NP_001152438.1 (RefSeq);InterPro=Domain of unknown function DUF296 (IPR005175),Predicted AT-hook DNA-binding (IPR014476);TENOR=Os09t0464300-00;KEGG=Os09t0464300-00
Chr09	irgsp1_rep	five_prime_UTR	17589425	17589518	.	-	.	Parent=Os09t0464300-00
Chr09	irgsp1_rep	five_prime_UTR	17589289	17589370	.	-	.	Parent=Os09t0464300-00
Chr09	irgsp1_rep	CDS	17588284	17589288	.	-	0	Parent=Os09t0464300-00
Chr09	irgsp1_rep	three_prime_UTR	17588153	17588283	.	-	.	Parent=Os09t0464300-00
Chr09	irgsp1_rep	mRNA	17588369	17588623	.	+	.	ID=Os09t0464350-00;Name=Os09t0464350-00;Locus_id=Os09g0464350;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os09t0464350-00
Chr09	irgsp1_rep	CDS	17588369	17588623	.	+	0	Parent=Os09t0464350-00
Chr09	irgsp1_rep	mRNA	17600530	17608513	.	-	.	ID=Os09t0464400-00;Name=Os09t0464400-00;Locus_id=Os09g0464400;CGSNL Gene Symbol=UBP7-7;CGSNL Gene Name=UBIQUITIN-SPECIFIC PROCESSING PROTEASE 7-7;Oryzabase Gene Symbol Synonym(s)=OsUBP7-7%2C OsUBP16%2C UBP16;Oryzabase Gene Name Synonym(s)=ubiquitin-specific processing protease 7-7%2C Ubiquitin-specific protease 16;Note=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q69MC2 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Molecular Function: ubiquitin thiolesterase activity (GO:0004221),Molecular Function: zinc ion binding (GO:0008270);InterPro=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (IPR001394),Zinc finger%2C MYND-type (IPR002893),Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2%2C conserved site (IPR018200);Oryzabase=22890;TENOR=Os09t0464400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	17608101	17608513	.	-	0	Parent=Os09t0464400-00
Chr09	irgsp1_rep	CDS	17605621	17606287	.	-	1	Parent=Os09t0464400-00
Chr09	irgsp1_rep	CDS	17605451	17605539	.	-	0	Parent=Os09t0464400-00
Chr09	irgsp1_rep	CDS	17603624	17603748	.	-	1	Parent=Os09t0464400-00
Chr09	irgsp1_rep	CDS	17603416	17603578	.	-	2	Parent=Os09t0464400-00
Chr09	irgsp1_rep	CDS	17602861	17602945	.	-	1	Parent=Os09t0464400-00
Chr09	irgsp1_rep	CDS	17602555	17602712	.	-	0	Parent=Os09t0464400-00
Chr09	irgsp1_rep	CDS	17602157	17602241	.	-	1	Parent=Os09t0464400-00
Chr09	irgsp1_rep	CDS	17601774	17601986	.	-	0	Parent=Os09t0464400-00
Chr09	irgsp1_rep	CDS	17601372	17601433	.	-	0	Parent=Os09t0464400-00
Chr09	irgsp1_rep	CDS	17600530	17601256	.	-	1	Parent=Os09t0464400-00
Chr09	irgsp1_rep	mRNA	17637893	17642350	.	+	.	ID=Os09t0465200-01;Name=Os09t0465200-01;Locus_id=Os09g0465200;Note=Hypothetical gene.;Transcript_evidence=AK121928 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033106J05;Expression=AK121928;TENOR=Os09t0465200-01;KEGG=Os09t0465200-01
Chr09	irgsp1_rep	five_prime_UTR	17637893	17639618	.	+	.	Parent=Os09t0465200-01
Chr09	irgsp1_rep	CDS	17639619	17639831	.	+	0	Parent=Os09t0465200-01
Chr09	irgsp1_rep	three_prime_UTR	17639832	17642350	.	+	.	Parent=Os09t0465200-01
Chr09	irgsp1_rep	mRNA	17642594	17643794	.	-	.	ID=Os09t0465400-00;Name=Os09t0465400-00;Locus_id=Os09g0465400;Note=Adenine nucleotide translocator 1 domain containing protein.;Transcript_evidence=EU967752 (DDBJ);ORF_evidence=NP_001150641.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial inner membrane (GO:0005743),Molecular Function: binding (GO:0005488);InterPro=Mitochondrial carrier protein (IPR002067),Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);TENOR=Os09t0465400-00;KEGG=Os09t0465400-00
Chr09	irgsp1_rep	CDS	17642595	17643794	.	-	0	Parent=Os09t0465400-00
Chr09	irgsp1_rep	three_prime_UTR	17642594	17642594	.	-	.	Parent=Os09t0465400-00
Chr09	irgsp1_rep	mRNA	17645487	17648515	.	+	.	ID=Os09t0465500-01;Name=Os09t0465500-01;Locus_id=Os09g0465500;Note=Conserved hypothetical protein.;Transcript_evidence=AK109671 (DDBJ%2C Best hit);ORF_evidence=A2Z254 (UniProt);NIAS_FLcDNA=002-145-B02;Expression=AK109671;TENOR=Os09t0465500-01;KEGG=Os09t0465500-01
Chr09	irgsp1_rep	five_prime_UTR	17645487	17645609	.	+	.	Parent=Os09t0465500-01
Chr09	irgsp1_rep	CDS	17645610	17645918	.	+	0	Parent=Os09t0465500-01
Chr09	irgsp1_rep	CDS	17646788	17646878	.	+	0	Parent=Os09t0465500-01
Chr09	irgsp1_rep	CDS	17647056	17647210	.	+	2	Parent=Os09t0465500-01
Chr09	irgsp1_rep	CDS	17647517	17647544	.	+	0	Parent=Os09t0465500-01
Chr09	irgsp1_rep	CDS	17647634	17647742	.	+	2	Parent=Os09t0465500-01
Chr09	irgsp1_rep	CDS	17648238	17648319	.	+	1	Parent=Os09t0465500-01
Chr09	irgsp1_rep	three_prime_UTR	17648320	17648515	.	+	.	Parent=Os09t0465500-01
Chr09	irgsp1_rep	mRNA	17648509	17653621	.	-	.	ID=Os09t0465600-01;Name=Os09t0465600-01;Locus_id=Os09g0465600;Oryzabase Gene Name Synonym(s)=Putative glucose-6-phosphate isomerase;Note=Similar to Glucose-6-phosphate isomerase-like protein (Fragment).;Transcript_evidence=AK068061 (DDBJ%2C Best hit);ORF_evidence=B8BCM8 (UniProt);GO=Biological Process: gluconeogenesis (GO:0006094),Biological Process: glycolysis (GO:0006096),Molecular Function: glucose-6-phosphate isomerase activity (GO:0004347);InterPro=Phosphoglucose isomerase (PGI) (IPR001672),Phosphoglucose isomerase%2C conserved site (IPR018189);NIAS_FLcDNA=J013132I18;Oryzabase=22236;Expression=AK068061;TENOR=Os09t0465600-01;KEGG=Os09t0465600-01 (EC:5.3.1.9)
Chr09	irgsp1_rep	five_prime_UTR	17653483	17653621	.	-	.	Parent=Os09t0465600-01
Chr09	irgsp1_rep	CDS	17652934	17653482	.	-	0	Parent=Os09t0465600-01
Chr09	irgsp1_rep	CDS	17652404	17652526	.	-	0	Parent=Os09t0465600-01
Chr09	irgsp1_rep	CDS	17652190	17652288	.	-	0	Parent=Os09t0465600-01
Chr09	irgsp1_rep	CDS	17652023	17652106	.	-	0	Parent=Os09t0465600-01
Chr09	irgsp1_rep	CDS	17651302	17651445	.	-	0	Parent=Os09t0465600-01
Chr09	irgsp1_rep	CDS	17651156	17651221	.	-	0	Parent=Os09t0465600-01
Chr09	irgsp1_rep	CDS	17650996	17651064	.	-	0	Parent=Os09t0465600-01
Chr09	irgsp1_rep	CDS	17650801	17650908	.	-	0	Parent=Os09t0465600-01
Chr09	irgsp1_rep	CDS	17650319	17650371	.	-	0	Parent=Os09t0465600-01
Chr09	irgsp1_rep	CDS	17650089	17650227	.	-	1	Parent=Os09t0465600-01
Chr09	irgsp1_rep	CDS	17649850	17650006	.	-	0	Parent=Os09t0465600-01
Chr09	irgsp1_rep	CDS	17649673	17649751	.	-	2	Parent=Os09t0465600-01
Chr09	irgsp1_rep	CDS	17649034	17649100	.	-	1	Parent=Os09t0465600-01
Chr09	irgsp1_rep	CDS	17648782	17648922	.	-	0	Parent=Os09t0465600-01
Chr09	irgsp1_rep	three_prime_UTR	17648509	17648781	.	-	.	Parent=Os09t0465600-01
Chr09	irgsp1_rep	mRNA	17659921	17662227	.	-	.	ID=Os09t0465800-01;Name=Os09t0465800-01;Locus_id=Os09g0465800;Note=Legume lectin%2C beta domain domain containing protein.;Transcript_evidence=AK062785 (DDBJ%2C Best hit);ORF_evidence=B6U7I7 (UniProt);NIAS_FLcDNA=001-107-B07;Expression=AK062785;TENOR=Os09t0465800-01;KEGG=Os09t0465800-01
Chr09	irgsp1_rep	five_prime_UTR	17662162	17662227	.	-	.	Parent=Os09t0465800-01
Chr09	irgsp1_rep	CDS	17662083	17662161	.	-	0	Parent=Os09t0465800-01
Chr09	irgsp1_rep	CDS	17661757	17661974	.	-	2	Parent=Os09t0465800-01
Chr09	irgsp1_rep	CDS	17660665	17660769	.	-	0	Parent=Os09t0465800-01
Chr09	irgsp1_rep	CDS	17660209	17660280	.	-	0	Parent=Os09t0465800-01
Chr09	irgsp1_rep	CDS	17660056	17660127	.	-	0	Parent=Os09t0465800-01
Chr09	irgsp1_rep	three_prime_UTR	17659921	17660055	.	-	.	Parent=Os09t0465800-01
Chr09	irgsp1_rep	mRNA	17680931	17683507	.	+	.	ID=Os09t0466100-01;Name=Os09t0466100-01;Locus_id=Os09g0466100;CGSNL Gene Symbol=CYCD4%3B1;CGSNL Gene Name=D-TYPE CYCLIN 4%3B1;Oryzabase Gene Symbol Synonym(s)=CycD2%3B1%2C CYCD2-1%2C Orysa%3BCycD2%3B1%2C OsCYCD2%3B1%2C Orysa%3BCycD4%3B1%2C CycD4%3B1%2C CYCD4-1%2C Orysa%3BCYCD4%3B1%2C cycD%2C OsCYCD4%3B1;Oryzabase Gene Name Synonym(s)=Cyclin-D2-1%2C cyclinD2%3B1%2C Cyclin-D4-1%2C cyclinD4%3B1;Note=Cyclin%2C A/B/D/E domain containing protein.;Transcript_evidence=AK063940 (DDBJ%2C Best hit);ORF_evidence=Q6YXH8 (UniProt);GO=Biological Process: regulation of cyclin-dependent protein kinase activity (GO:0000079),Biological Process: regulation of cell cycle (GO:0051726),Cellular Component: nucleus (GO:0005634),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin%2C C-terminal (IPR004367),Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763),Cyclin A/B/D/E (IPR014400);NIAS_FLcDNA=001-123-E03;Oryzabase=12362;Expression=AK063940;TENOR=Os09t0466100-01;KEGG=Os09t0466100-01
Chr09	irgsp1_rep	five_prime_UTR	17680931	17680935	.	+	.	Parent=Os09t0466100-01
Chr09	irgsp1_rep	CDS	17680936	17681271	.	+	0	Parent=Os09t0466100-01
Chr09	irgsp1_rep	CDS	17681377	17681463	.	+	0	Parent=Os09t0466100-01
Chr09	irgsp1_rep	CDS	17681846	17681944	.	+	0	Parent=Os09t0466100-01
Chr09	irgsp1_rep	CDS	17682082	17682283	.	+	0	Parent=Os09t0466100-01
Chr09	irgsp1_rep	CDS	17682386	17682483	.	+	2	Parent=Os09t0466100-01
Chr09	irgsp1_rep	CDS	17682701	17682949	.	+	0	Parent=Os09t0466100-01
Chr09	irgsp1_rep	three_prime_UTR	17682950	17683507	.	+	.	Parent=Os09t0466100-01
Chr09	irgsp1_rep	mRNA	17681812	17683438	.	+	.	ID=Os09t0466100-02;Name=Os09t0466100-02;Locus_id=Os09g0466100;CGSNL Gene Symbol=CYCD4%3B1;CGSNL Gene Name=D-TYPE CYCLIN 4%3B1;Oryzabase Gene Symbol Synonym(s)=CycD2%3B1%2C CYCD2-1%2C Orysa%3BCycD2%3B1%2C OsCYCD2%3B1%2C Orysa%3BCycD4%3B1%2C CycD4%3B1%2C CYCD4-1%2C Orysa%3BCYCD4%3B1%2C cycD%2C OsCYCD4%3B1;Oryzabase Gene Name Synonym(s)=Cyclin-D2-1%2C cyclinD2%3B1%2C Cyclin-D4-1%2C cyclinD4%3B1;Note=Similar to cDNA clone:001-123-E03%2C full insert sequence.;Transcript_evidence=AK102698 (DDBJ%2C Best hit);ORF_evidence=B7E976 (UniProt);GO=Cellular Component: nucleus (GO:0005634);InterPro=Cyclin%2C C-terminal (IPR004367),Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763);NIAS_FLcDNA=J033103I16;Oryzabase=12362;Expression=AK102698;TENOR=Os09t0466100-02;KEGG=Os09t0466100-02
Chr09	irgsp1_rep	five_prime_UTR	17681812	17681812	.	+	.	Parent=Os09t0466100-02
Chr09	irgsp1_rep	CDS	17681813	17681944	.	+	0	Parent=Os09t0466100-02
Chr09	irgsp1_rep	CDS	17682082	17682283	.	+	0	Parent=Os09t0466100-02
Chr09	irgsp1_rep	CDS	17682386	17682483	.	+	2	Parent=Os09t0466100-02
Chr09	irgsp1_rep	CDS	17682701	17682949	.	+	0	Parent=Os09t0466100-02
Chr09	irgsp1_rep	three_prime_UTR	17682950	17683438	.	+	.	Parent=Os09t0466100-02
Chr09	irgsp1_rep	mRNA	17681077	17682199	.	-	.	ID=Os09t0466201-00;Name=Os09t0466201-00;Locus_id=Os09g0466201;Note=Hypothetical protein.;Transcript_evidence=BT086899 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0466201-00
Chr09	irgsp1_rep	five_prime_UTR	17682199	17682199	.	-	.	Parent=Os09t0466201-00
Chr09	irgsp1_rep	CDS	17682072	17682198	.	-	0	Parent=Os09t0466201-00
Chr09	irgsp1_rep	CDS	17681836	17681938	.	-	2	Parent=Os09t0466201-00
Chr09	irgsp1_rep	CDS	17681423	17681450	.	-	1	Parent=Os09t0466201-00
Chr09	irgsp1_rep	three_prime_UTR	17681389	17681422	.	-	.	Parent=Os09t0466201-00
Chr09	irgsp1_rep	three_prime_UTR	17681077	17681282	.	-	.	Parent=Os09t0466201-00
Chr09	irgsp1_rep	mRNA	17694162	17695486	.	+	.	ID=Os09t0466300-01;Name=Os09t0466300-01;Locus_id=Os09g0466300;Note=Similar to FIP1.;Transcript_evidence=AK102696 (DDBJ%2C Best hit);ORF_evidence=NP_001151291.1 (RefSeq);InterPro=GRAM (IPR004182);NIAS_FLcDNA=J033103F22;TENOR=Os09t0466300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	17694162	17694163	.	+	.	Parent=Os09t0466300-01
Chr09	irgsp1_rep	CDS	17694164	17694302	.	+	0	Parent=Os09t0466300-01
Chr09	irgsp1_rep	CDS	17694391	17694492	.	+	2	Parent=Os09t0466300-01
Chr09	irgsp1_rep	CDS	17694607	17694881	.	+	2	Parent=Os09t0466300-01
Chr09	irgsp1_rep	CDS	17694989	17695177	.	+	0	Parent=Os09t0466300-01
Chr09	irgsp1_rep	three_prime_UTR	17695178	17695486	.	+	.	Parent=Os09t0466300-01
Chr09	irgsp1_rep	mRNA	17704077	17705245	.	-	.	ID=Os09t0466400-01;Name=Os09t0466400-01;Locus_id=Os09g0466400;RAP-DB Gene Symbol Synonym(s)=OsZHD1;RAP-DB Gene Name Synonym(s)=zinc finger homeodomain class homeobox transcription factor 1;Oryzabase Gene Symbol Synonym(s)=OsZHD1%2C ZHD1;Oryzabase Gene Name Synonym(s)=zinc finger homeodomain class homeobox transcription factor 1;Note=Zinc finger homeodomain (ZF-HD) class homeobox transcription factor%2C Rice morphogenesis%2C Modulation of leaf rolling;Transcript_evidence=AK108246;ORF_evidence=Q6YXH5;GO=Molecular Function: DNA binding (GO:0003677);InterPro=ZF-HD homeobox protein%2C Cys/His-rich dimerisation domain (IPR006456),Homeobox domain-like (IPR009057),Homeodomain%2C ZF-HD class (IPR006455);NIAS_FLcDNA=002-140-H06;Manual Curation=January 24%2C 2017;Literature_PMID=24385091;Oryzabase=15614;Expression=AK108246;TENOR=Os09t0466400-01;KEGG=Os09t0466400-01;Subcellular location=nucleus (GO:0005634)
Chr09	irgsp1_rep	five_prime_UTR	17705176	17705245	.	-	.	Parent=Os09t0466400-01
Chr09	irgsp1_rep	CDS	17704336	17705175	.	-	0	Parent=Os09t0466400-01
Chr09	irgsp1_rep	three_prime_UTR	17704077	17704335	.	-	.	Parent=Os09t0466400-01
Chr09	irgsp1_rep	mRNA	17731574	17733252	.	-	.	ID=Os09t0466800-01;Name=Os09t0466800-01;Locus_id=Os09g0466800;Note=Conserved hypothetical protein.;Transcript_evidence=AK101607 (DDBJ%2C Best hit);ORF_evidence=A2Z260 (UniProt);NIAS_FLcDNA=J033052A16;Expression=AK101607;TENOR=Os09t0466800-01;KEGG=Os09t0466800-01
Chr09	irgsp1_rep	five_prime_UTR	17733216	17733252	.	-	.	Parent=Os09t0466800-01
Chr09	irgsp1_rep	CDS	17732259	17733215	.	-	0	Parent=Os09t0466800-01
Chr09	irgsp1_rep	CDS	17731777	17732163	.	-	0	Parent=Os09t0466800-01
Chr09	irgsp1_rep	three_prime_UTR	17731574	17731776	.	-	.	Parent=Os09t0466800-01
Chr09	irgsp1_rep	mRNA	17734739	17738428	.	-	.	ID=Os09t0466900-01;Name=Os09t0466900-01;Locus_id=Os09g0466900;Oryzabase Gene Symbol Synonym(s)=OsPEPRK2;Oryzabase Gene Name Synonym(s)=phosphoenolpyruvate (PEP) carboxylase kinase-related kinase 2;Note=Similar to Calcium-dependent protein kinase.;Transcript_evidence=AK109479 (DDBJ%2C Best hit);ORF_evidence=D2KHX1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-200-H01;Oryzabase=10481;Expression=AK109479;TENOR=Os09t0466900-01;KEGG=Os09t0466900-01 (EC:2.7.11.17)
Chr09	irgsp1_rep	five_prime_UTR	17738142	17738428	.	-	.	Parent=Os09t0466900-01
Chr09	irgsp1_rep	CDS	17737391	17738141	.	-	0	Parent=Os09t0466900-01
Chr09	irgsp1_rep	CDS	17735392	17735759	.	-	2	Parent=Os09t0466900-01
Chr09	irgsp1_rep	three_prime_UTR	17734739	17735391	.	-	.	Parent=Os09t0466900-01
Chr09	irgsp1_rep	mRNA	17734589	17738343	.	-	.	ID=Os09t0466900-02;Name=Os09t0466900-02;Locus_id=Os09g0466900;Oryzabase Gene Symbol Synonym(s)=OsPEPRK2;Oryzabase Gene Name Synonym(s)=phosphoenolpyruvate (PEP) carboxylase kinase-related kinase 2;Note=Similar to Serine-threonine protein kinase.;Transcript_evidence=AK122120 (DDBJ%2C Best hit);ORF_evidence=D2KHX1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033129G18;Oryzabase=10481;TENOR=Os09t0466900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	17738142	17738343	.	-	.	Parent=Os09t0466900-02
Chr09	irgsp1_rep	CDS	17737391	17738141	.	-	0	Parent=Os09t0466900-02
Chr09	irgsp1_rep	CDS	17735463	17735759	.	-	2	Parent=Os09t0466900-02
Chr09	irgsp1_rep	CDS	17735059	17735372	.	-	2	Parent=Os09t0466900-02
Chr09	irgsp1_rep	three_prime_UTR	17734589	17735058	.	-	.	Parent=Os09t0466900-02
Chr09	irgsp1_rep	mRNA	17742622	17746476	.	+	.	ID=Os09t0467100-01;Name=Os09t0467100-01;Locus_id=Os09g0467100;Note=ATP-grasp fold%2C subdomain 2 domain containing protein.;Transcript_evidence=AK063444 (DDBJ%2C Best hit);ORF_evidence=B8BCN0 (UniProt);GO=Biological Process: purine nucleotide biosynthetic process (GO:0006164),Molecular Function: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity (GO:0004639),Molecular Function: ATP binding (GO:0005524),Molecular Function: ligase activity (GO:0016874);InterPro=SAICAR synthetase (IPR001636),ATP-grasp fold%2C subdomain 2 (IPR013816),SAICAR synthetase%2C conserved site (IPR018236);NIAS_FLcDNA=001-115-F04;Expression=AK063444;TENOR=Os09t0467100-01;KEGG=Os09t0467100-01 (EC:6.3.2.6)
Chr09	irgsp1_rep	five_prime_UTR	17742622	17742646	.	+	.	Parent=Os09t0467100-01
Chr09	irgsp1_rep	CDS	17742647	17742970	.	+	0	Parent=Os09t0467100-01
Chr09	irgsp1_rep	CDS	17743065	17743166	.	+	0	Parent=Os09t0467100-01
Chr09	irgsp1_rep	CDS	17743503	17743632	.	+	0	Parent=Os09t0467100-01
Chr09	irgsp1_rep	CDS	17743849	17743941	.	+	2	Parent=Os09t0467100-01
Chr09	irgsp1_rep	CDS	17744014	17744102	.	+	2	Parent=Os09t0467100-01
Chr09	irgsp1_rep	CDS	17744540	17744620	.	+	0	Parent=Os09t0467100-01
Chr09	irgsp1_rep	CDS	17744769	17744858	.	+	0	Parent=Os09t0467100-01
Chr09	irgsp1_rep	CDS	17745334	17745423	.	+	0	Parent=Os09t0467100-01
Chr09	irgsp1_rep	CDS	17745528	17745578	.	+	0	Parent=Os09t0467100-01
Chr09	irgsp1_rep	CDS	17745776	17745822	.	+	0	Parent=Os09t0467100-01
Chr09	irgsp1_rep	CDS	17745972	17746029	.	+	1	Parent=Os09t0467100-01
Chr09	irgsp1_rep	CDS	17746102	17746158	.	+	0	Parent=Os09t0467100-01
Chr09	irgsp1_rep	three_prime_UTR	17746159	17746476	.	+	.	Parent=Os09t0467100-01
Chr09	irgsp1_rep	mRNA	17747275	17748705	.	+	.	ID=Os09t0467200-01;Name=Os09t0467200-01;Locus_id=Os09g0467200;CGSNL Gene Symbol=GSTU17;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 17;Oryzabase Gene Symbol Synonym(s)=OsGSTU17%2C OsGST23%2C GST23;Oryzabase Gene Name Synonym(s)=glutathione S-transferase 17%2C Glutathione S-transferase 23;Note=Similar to Glutathione S-transferase GST 23 (EC 2.5.1.18) (Fragment).;Transcript_evidence=AK099489 (DDBJ%2C Best hit),AK060223 (DDBJ%2C Best hit),AK061838 (DDBJ%2C Best hit);ORF_evidence=NP_001104994.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=J013026J15,001-002-F11,001-040-D11;Oryzabase=7268;TENOR=Os09t0467200-01
Chr09	irgsp1_rep	five_prime_UTR	17747275	17747300	.	+	.	Parent=Os09t0467200-01
Chr09	irgsp1_rep	CDS	17747301	17747621	.	+	0	Parent=Os09t0467200-01
Chr09	irgsp1_rep	CDS	17748112	17748462	.	+	0	Parent=Os09t0467200-01
Chr09	irgsp1_rep	three_prime_UTR	17748463	17748705	.	+	.	Parent=Os09t0467200-01
Chr09	irgsp1_rep	mRNA	17749385	17751263	.	-	.	ID=Os09t0467300-01;Name=Os09t0467300-01;Locus_id=Os09g0467300;CGSNL Gene Symbol=PUP2;CGSNL Gene Name=PURINE PERMEASE 2;Oryzabase Gene Symbol Synonym(s)=OsPUP2;Oryzabase Gene Name Synonym(s)=purine permease 2%2C PUP-type cytokinin transporter 2;Note=Similar to PUP1.;Transcript_evidence=AK063511 (DDBJ%2C Best hit);ORF_evidence=NP_001147096.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620),Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=001-116-G01;Oryzabase=15003;Expression=AK063511;TENOR=Os09t0467300-01;KEGG=Os09t0467300-01
Chr09	irgsp1_rep	five_prime_UTR	17751191	17751263	.	-	.	Parent=Os09t0467300-01
Chr09	irgsp1_rep	CDS	17750321	17751190	.	-	0	Parent=Os09t0467300-01
Chr09	irgsp1_rep	three_prime_UTR	17749385	17750320	.	-	.	Parent=Os09t0467300-01
Chr09	irgsp1_rep	mRNA	17748588	17751261	.	-	.	ID=Os09t0467300-02;Name=Os09t0467300-02;Locus_id=Os09g0467300;CGSNL Gene Symbol=PUP2;CGSNL Gene Name=PURINE PERMEASE 2;Oryzabase Gene Symbol Synonym(s)=OsPUP2;Oryzabase Gene Name Synonym(s)=purine permease 2%2C PUP-type cytokinin transporter 2;Note=Protein of unknown function DUF6%2C transmembrane domain containing protein.;Transcript_evidence=AK064135 (DDBJ%2C Best hit);ORF_evidence=NP_001147096.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620),Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=002-102-G04;Oryzabase=15003;Expression=AK064135;TENOR=Os09t0467300-02;KEGG=Os09t0467300-02
Chr09	irgsp1_rep	five_prime_UTR	17751191	17751261	.	-	.	Parent=Os09t0467300-02
Chr09	irgsp1_rep	CDS	17750366	17751190	.	-	0	Parent=Os09t0467300-02
Chr09	irgsp1_rep	CDS	17748708	17749055	.	-	0	Parent=Os09t0467300-02
Chr09	irgsp1_rep	three_prime_UTR	17748588	17748707	.	-	.	Parent=Os09t0467300-02
Chr09	irgsp1_rep	mRNA	17755808	17762575	.	-	.	ID=Os09t0467400-02;Name=Os09t0467400-02;Locus_id=Os09g0467400;CGSNL Gene Symbol=PUP3;CGSNL Gene Name=PURINE PERMEASE 3;Oryzabase Gene Symbol Synonym(s)=OsPUP3;Oryzabase Gene Name Synonym(s)=purine permease 3%2C PUP-type cytokinin transporter 3;Note=Similar to ATPUP3.;Transcript_evidence=AK061667 (DDBJ%2C Best hit);ORF_evidence=B4FET6 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620),Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=001-036-F06;Oryzabase=15004;Expression=AK061667;TENOR=Os09t0467400-02;KEGG=Os09t0467400-02
Chr09	irgsp1_rep	five_prime_UTR	17762451	17762575	.	-	.	Parent=Os09t0467400-02
Chr09	irgsp1_rep	CDS	17761695	17762450	.	-	0	Parent=Os09t0467400-02
Chr09	irgsp1_rep	CDS	17756055	17756384	.	-	0	Parent=Os09t0467400-02
Chr09	irgsp1_rep	three_prime_UTR	17755808	17756054	.	-	.	Parent=Os09t0467400-02
Chr09	irgsp1_rep	mRNA	17755755	17771403	.	-	.	ID=Os09t0467400-03;Name=Os09t0467400-03;Locus_id=Os09g0467400;CGSNL Gene Symbol=PUP3;CGSNL Gene Name=PURINE PERMEASE 3;Oryzabase Gene Symbol Synonym(s)=OsPUP3;Oryzabase Gene Name Synonym(s)=purine permease 3%2C PUP-type cytokinin transporter 3;Note=Protein of unknown function DUF6%2C transmembrane domain containing protein.;Transcript_evidence=AK066610 (DDBJ%2C Best hit);ORF_evidence=B4FET6 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620),Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=J013073M15;Oryzabase=15004;TENOR=Os09t0467400-03
Chr09	irgsp1_rep	five_prime_UTR	17771286	17771403	.	-	.	Parent=Os09t0467400-03
Chr09	irgsp1_rep	CDS	17770530	17771285	.	-	0	Parent=Os09t0467400-03
Chr09	irgsp1_rep	CDS	17756055	17756384	.	-	0	Parent=Os09t0467400-03
Chr09	irgsp1_rep	three_prime_UTR	17755755	17756054	.	-	.	Parent=Os09t0467400-03
Chr09	irgsp1_rep	mRNA	17773479	17774354	.	-	.	ID=Os09t0467700-01;Name=Os09t0467700-01;Locus_id=Os09g0467700;Note=Conserved hypothetical protein.;Transcript_evidence=AK061600 (DDBJ%2C Best hit);ORF_evidence=Q6K5E8 (UniProt);NIAS_FLcDNA=001-027-B08;Expression=AK061600;TENOR=Os09t0467700-01;KEGG=Os09t0467700-01
Chr09	irgsp1_rep	five_prime_UTR	17774032	17774354	.	-	.	Parent=Os09t0467700-01
Chr09	irgsp1_rep	CDS	17773525	17774031	.	-	0	Parent=Os09t0467700-01
Chr09	irgsp1_rep	three_prime_UTR	17773479	17773524	.	-	.	Parent=Os09t0467700-01
Chr09	irgsp1_rep	mRNA	17777151	17784627	.	+	.	ID=Os09t0468000-01;Name=Os09t0468000-01;Locus_id=Os09g0468000;Note=Multi antimicrobial extrusion protein MatE family protein.;Transcript_evidence=AK103478 (DDBJ%2C Best hit);ORF_evidence=NP_001147792.1 (RefSeq);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);NIAS_FLcDNA=J033130E19;Expression=AK103478;TENOR=Os09t0468000-01;KEGG=Os09t0468000-01
Chr09	irgsp1_rep	five_prime_UTR	17777151	17777237	.	+	.	Parent=Os09t0468000-01
Chr09	irgsp1_rep	CDS	17777238	17777507	.	+	0	Parent=Os09t0468000-01
Chr09	irgsp1_rep	CDS	17782652	17783193	.	+	0	Parent=Os09t0468000-01
Chr09	irgsp1_rep	CDS	17783348	17783434	.	+	1	Parent=Os09t0468000-01
Chr09	irgsp1_rep	CDS	17783546	17783602	.	+	1	Parent=Os09t0468000-01
Chr09	irgsp1_rep	CDS	17783703	17783941	.	+	1	Parent=Os09t0468000-01
Chr09	irgsp1_rep	CDS	17784019	17784137	.	+	2	Parent=Os09t0468000-01
Chr09	irgsp1_rep	CDS	17784245	17784331	.	+	0	Parent=Os09t0468000-01
Chr09	irgsp1_rep	CDS	17784409	17784456	.	+	0	Parent=Os09t0468000-01
Chr09	irgsp1_rep	three_prime_UTR	17784457	17784627	.	+	.	Parent=Os09t0468000-01
Chr09	irgsp1_rep	mRNA	17785710	17786769	.	-	.	ID=Os09t0468150-00;Name=Os09t0468150-00;Locus_id=Os09g0468150;Note=Epsin-like%2C N-terminal domain containing protein.;Transcript_evidence=BT033323 (DDBJ);ORF_evidence=B6UDT7 (UniProt);InterPro=ENTH/VHS (IPR008942),Epsin-like%2C N-terminal (IPR013809);TENOR=Os09t0468150-00;KEGG=Os09t0468150-00
Chr09	irgsp1_rep	five_prime_UTR	17786712	17786769	.	-	.	Parent=Os09t0468150-00
Chr09	irgsp1_rep	CDS	17785710	17786711	.	-	0	Parent=Os09t0468150-00
Chr09	irgsp1_rep	mRNA	17790438	17792028	.	-	.	ID=Os09t0468300-00;Name=Os09t0468300-00;Locus_id=Os09g0468300;Note=Hypothetical conserved gene.;Transcript_evidence=CT835872 (DDBJ%2C Best hit);ORF_evidence=A2Z274 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os09t0468300-00;KEGG=Os09t0468300-00
Chr09	irgsp1_rep	five_prime_UTR	17791988	17792028	.	-	.	Parent=Os09t0468300-00
Chr09	irgsp1_rep	CDS	17791364	17791987	.	-	0	Parent=Os09t0468300-00
Chr09	irgsp1_rep	CDS	17790809	17791348	.	-	0	Parent=Os09t0468300-00
Chr09	irgsp1_rep	three_prime_UTR	17790438	17790808	.	-	.	Parent=Os09t0468300-00
Chr09	irgsp1_rep	mRNA	17822800	17827671	.	-	.	ID=Os09t0468600-00;Name=Os09t0468600-00;Locus_id=Os09g0468600;Note=NPH3 domain containing protein.;Transcript_evidence=FP092159 (DDBJ);ORF_evidence=Q6K4B2 (UniProt);GO=Biological Process: response to light stimulus (GO:0009416),Molecular Function: signal transducer activity (GO:0004871);InterPro=NPH3 (IPR004249);TENOR=Os09t0468600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	17827491	17827671	.	-	.	Parent=Os09t0468600-00
Chr09	irgsp1_rep	five_prime_UTR	17823289	17823401	.	-	.	Parent=Os09t0468600-00
Chr09	irgsp1_rep	CDS	17822800	17823288	.	-	0	Parent=Os09t0468600-00
Chr09	irgsp1_rep	mRNA	17822834	17823938	.	+	.	ID=Os09t0468650-01;Name=Os09t0468650-01;Locus_id=Os09g0468650;Note=Conserved hypothetical protein.;Transcript_evidence=AK242827 (DDBJ%2C Best hit);ORF_evidence=NP_001175878.1 (RefSeq);NIAS_FLcDNA=J090067H06;TENOR=Os09t0468650-01;KEGG=Os09t0468650-01
Chr09	irgsp1_rep	five_prime_UTR	17822834	17823048	.	+	.	Parent=Os09t0468650-01
Chr09	irgsp1_rep	CDS	17823049	17823393	.	+	0	Parent=Os09t0468650-01
Chr09	irgsp1_rep	three_prime_UTR	17823394	17823938	.	+	.	Parent=Os09t0468650-01
Chr09	irgsp1_rep	mRNA	17826692	17828508	.	+	.	ID=Os09t0468700-00;Name=Os09t0468700-00;Locus_id=Os09g0468700;Oryzabase Gene Symbol Synonym(s)=OsbHLH046;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 046;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=EU972204 (DDBJ);ORF_evidence=B6SGV5 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);Oryzabase=15337;TENOR=Os09t0468700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	17826692	17826725	.	+	.	Parent=Os09t0468700-00
Chr09	irgsp1_rep	CDS	17826726	17827220	.	+	0	Parent=Os09t0468700-00
Chr09	irgsp1_rep	CDS	17827380	17827838	.	+	0	Parent=Os09t0468700-00
Chr09	irgsp1_rep	CDS	17828200	17828301	.	+	0	Parent=Os09t0468700-00
Chr09	irgsp1_rep	three_prime_UTR	17828302	17828508	.	+	.	Parent=Os09t0468700-00
Chr09	irgsp1_rep	mRNA	17833762	17835041	.	-	.	ID=Os09t0468800-00;Name=Os09t0468800-00;Locus_id=Os09g0468800;Note=Similar to RING-H2 finger protein ATL5F.;Transcript_evidence=EU970466 (DDBJ);ORF_evidence=NP_001147691.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os09t0468800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	17834513	17835041	.	-	0	Parent=Os09t0468800-00
Chr09	irgsp1_rep	CDS	17833762	17834408	.	-	2	Parent=Os09t0468800-00
Chr09	irgsp1_rep	mRNA	17834181	17834731	.	+	.	ID=Os09t0468850-00;Name=Os09t0468850-00;Locus_id=Os09g0468850;Note=Hypothetical protein.;Transcript_evidence=EU943053 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0468850-00
Chr09	irgsp1_rep	five_prime_UTR	17834181	17834292	.	+	.	Parent=Os09t0468850-00
Chr09	irgsp1_rep	CDS	17834293	17834634	.	+	0	Parent=Os09t0468850-00
Chr09	irgsp1_rep	three_prime_UTR	17834635	17834731	.	+	.	Parent=Os09t0468850-00
Chr09	irgsp1_rep	mRNA	17835905	17837988	.	+	.	ID=Os09t0468900-01;Name=Os09t0468900-01;Locus_id=Os09g0468900;Note=Conserved hypothetical protein.;Transcript_evidence=AK120990 (DDBJ%2C Best hit);ORF_evidence=A2Z278 (UniProt);NIAS_FLcDNA=J023043E08;Expression=AK120990;TENOR=Os09t0468900-01;KEGG=Os09t0468900-01
Chr09	irgsp1_rep	five_prime_UTR	17835905	17836063	.	+	.	Parent=Os09t0468900-01
Chr09	irgsp1_rep	CDS	17836064	17836125	.	+	0	Parent=Os09t0468900-01
Chr09	irgsp1_rep	CDS	17836227	17836280	.	+	1	Parent=Os09t0468900-01
Chr09	irgsp1_rep	CDS	17836380	17836490	.	+	1	Parent=Os09t0468900-01
Chr09	irgsp1_rep	CDS	17836572	17836642	.	+	1	Parent=Os09t0468900-01
Chr09	irgsp1_rep	CDS	17836907	17837100	.	+	2	Parent=Os09t0468900-01
Chr09	irgsp1_rep	CDS	17837670	17837747	.	+	0	Parent=Os09t0468900-01
Chr09	irgsp1_rep	three_prime_UTR	17837748	17837988	.	+	.	Parent=Os09t0468900-01
Chr09	irgsp1_rep	mRNA	17843411	17844628	.	+	.	ID=Os09t0469300-01;Name=Os09t0469300-01;Locus_id=Os09g0469300;CGSNL Gene Symbol=UCL31;CGSNL Gene Name=UCLACYANIN-LIKE PROTEIN 31;Oryzabase Gene Symbol Synonym(s)=OsUCL31;Oryzabase Gene Name Synonym(s)=uclacyanin-like protein 31;Note=Cupredoxin domain containing protein.;Transcript_evidence=AK059930 (DDBJ%2C Best hit);ORF_evidence=B6TCC4 (UniProt);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Blue (type 1) copper domain (IPR000923),Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);NIAS_FLcDNA=006-210-B02;Oryzabase=9780;Expression=AK059930;TENOR=Os09t0469300-01;KEGG=Os09t0469300-01
Chr09	irgsp1_rep	five_prime_UTR	17843411	17843519	.	+	.	Parent=Os09t0469300-01
Chr09	irgsp1_rep	CDS	17843520	17843682	.	+	0	Parent=Os09t0469300-01
Chr09	irgsp1_rep	CDS	17843935	17844230	.	+	2	Parent=Os09t0469300-01
Chr09	irgsp1_rep	three_prime_UTR	17844231	17844628	.	+	.	Parent=Os09t0469300-01
Chr09	irgsp1_rep	mRNA	17857352	17868668	.	-	.	ID=Os09t0469400-01;Name=Os09t0469400-01;Locus_id=Os09g0469400;CGSNL Gene Symbol=ISA3;CGSNL Gene Name=ISOAMYLASE 3;Oryzabase Gene Symbol Synonym(s)=OsISA3;Oryzabase Gene Name Synonym(s)=isoamylase-3%2C isoamylase3;Note=Similar to isoamylase-type starch debranching enzyme ISO3.;Transcript_evidence=AK101554 (DDBJ%2C Best hit);ORF_evidence=NP_001105198.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 13%2C N-terminal (IPR004193),Glycosyl hydrolase%2C family 13%2C catalytic domain (IPR006047),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Immunoglobulin-like fold (IPR013783),Alpha amylase (IPR015902),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J033050A06;Oryzabase=6180;TENOR=Os09t0469400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	17868256	17868668	.	-	.	Parent=Os09t0469400-01
Chr09	irgsp1_rep	five_prime_UTR	17868099	17868163	.	-	.	Parent=Os09t0469400-01
Chr09	irgsp1_rep	five_prime_UTR	17867949	17868009	.	-	.	Parent=Os09t0469400-01
Chr09	irgsp1_rep	CDS	17867940	17867948	.	-	0	Parent=Os09t0469400-01
Chr09	irgsp1_rep	CDS	17867514	17867671	.	-	0	Parent=Os09t0469400-01
Chr09	irgsp1_rep	CDS	17866938	17867031	.	-	1	Parent=Os09t0469400-01
Chr09	irgsp1_rep	CDS	17866078	17866314	.	-	0	Parent=Os09t0469400-01
Chr09	irgsp1_rep	CDS	17865898	17866002	.	-	0	Parent=Os09t0469400-01
Chr09	irgsp1_rep	CDS	17865601	17865705	.	-	0	Parent=Os09t0469400-01
Chr09	irgsp1_rep	CDS	17865387	17865521	.	-	0	Parent=Os09t0469400-01
Chr09	irgsp1_rep	CDS	17865200	17865286	.	-	0	Parent=Os09t0469400-01
Chr09	irgsp1_rep	CDS	17864746	17864835	.	-	0	Parent=Os09t0469400-01
Chr09	irgsp1_rep	three_prime_UTR	17864334	17864745	.	-	.	Parent=Os09t0469400-01
Chr09	irgsp1_rep	three_prime_UTR	17863790	17863889	.	-	.	Parent=Os09t0469400-01
Chr09	irgsp1_rep	three_prime_UTR	17863155	17863255	.	-	.	Parent=Os09t0469400-01
Chr09	irgsp1_rep	three_prime_UTR	17862755	17862806	.	-	.	Parent=Os09t0469400-01
Chr09	irgsp1_rep	three_prime_UTR	17861866	17861928	.	-	.	Parent=Os09t0469400-01
Chr09	irgsp1_rep	three_prime_UTR	17861262	17861351	.	-	.	Parent=Os09t0469400-01
Chr09	irgsp1_rep	three_prime_UTR	17861096	17861168	.	-	.	Parent=Os09t0469400-01
Chr09	irgsp1_rep	three_prime_UTR	17859211	17859290	.	-	.	Parent=Os09t0469400-01
Chr09	irgsp1_rep	three_prime_UTR	17859021	17859125	.	-	.	Parent=Os09t0469400-01
Chr09	irgsp1_rep	three_prime_UTR	17858822	17858920	.	-	.	Parent=Os09t0469400-01
Chr09	irgsp1_rep	three_prime_UTR	17858517	17858578	.	-	.	Parent=Os09t0469400-01
Chr09	irgsp1_rep	three_prime_UTR	17858298	17858409	.	-	.	Parent=Os09t0469400-01
Chr09	irgsp1_rep	three_prime_UTR	17857352	17857884	.	-	.	Parent=Os09t0469400-01
Chr09	irgsp1_rep	mRNA	17851431	17858922	.	-	.	ID=Os09t0469400-02;Name=Os09t0469400-02;Locus_id=Os09g0469400;CGSNL Gene Symbol=ISA3;CGSNL Gene Name=ISOAMYLASE 3;Oryzabase Gene Symbol Synonym(s)=OsISA3;Oryzabase Gene Name Synonym(s)=isoamylase-3%2C isoamylase3;Note=Similar to isoamylase-type starch debranching enzyme ISO3.;Transcript_evidence=AK106986 (DDBJ%2C Best hit);ORF_evidence=NP_001105198.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: cation binding (GO:0043169);InterPro=Glycosyl hydrolase%2C family 13%2C all-beta (IPR013780),Alpha amylase (IPR015902);NIAS_FLcDNA=002-120-A01;Oryzabase=6180;Expression=AK106986;TENOR=Os09t0469400-02;KEGG=Os09t0469400-02 (EC:3.2.1.-)
Chr09	irgsp1_rep	five_prime_UTR	17858921	17858922	.	-	.	Parent=Os09t0469400-02
Chr09	irgsp1_rep	CDS	17858822	17858920	.	-	0	Parent=Os09t0469400-02
Chr09	irgsp1_rep	CDS	17858517	17858578	.	-	0	Parent=Os09t0469400-02
Chr09	irgsp1_rep	CDS	17858298	17858409	.	-	1	Parent=Os09t0469400-02
Chr09	irgsp1_rep	CDS	17857771	17857884	.	-	0	Parent=Os09t0469400-02
Chr09	irgsp1_rep	three_prime_UTR	17856990	17857770	.	-	.	Parent=Os09t0469400-02
Chr09	irgsp1_rep	three_prime_UTR	17851431	17852185	.	-	.	Parent=Os09t0469400-02
Chr09	irgsp1_rep	mRNA	17852398	17853104	.	-	.	ID=Os09t0469600-01;Name=Os09t0469600-01;Locus_id=Os09g0469600;Note=Non-protein coding transcript.;Transcript_evidence=AK058776 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-002-B02;TENOR=Os09t0469600-01
Chr09	irgsp1_rep	exon	17853050	17853104	.	-	.	Parent=Os09t0469600-01
Chr09	irgsp1_rep	exon	17852398	17852666	.	-	.	Parent=Os09t0469600-01
Chr09	irgsp1_rep	mRNA	17874476	17880179	.	+	.	ID=Os09t0469900-01;Name=Os09t0469900-01;Locus_id=Os09g0469900;Note=Similar to Queuine tRNA-ribosyltransferase (EC 2.4.2.29) (tRNA-guanine transglycosylase) (Guanine insertion enzyme).;Transcript_evidence=AK102528 (DDBJ%2C Best hit);ORF_evidence=B9G435 (UniProt);GO=Biological Process: tRNA modification (GO:0006400),Biological Process: tRNA processing (GO:0008033),Biological Process: queuosine biosynthetic process (GO:0008616),Molecular Function: queuine tRNA-ribosyltransferase activity (GO:0008479);InterPro=Queuine/other tRNA-ribosyltransferase (IPR002616),Queuine tRNA-ribosyltransferase (IPR004803);NIAS_FLcDNA=J033096C17;Expression=AK102528;TENOR=Os09t0469900-01;KEGG=Os09t0469900-01 (EC:2.4.2.29)
Chr09	irgsp1_rep	five_prime_UTR	17874476	17874634	.	+	.	Parent=Os09t0469900-01
Chr09	irgsp1_rep	five_prime_UTR	17874773	17874814	.	+	.	Parent=Os09t0469900-01
Chr09	irgsp1_rep	CDS	17874815	17874832	.	+	0	Parent=Os09t0469900-01
Chr09	irgsp1_rep	CDS	17875623	17875716	.	+	0	Parent=Os09t0469900-01
Chr09	irgsp1_rep	CDS	17875902	17876080	.	+	2	Parent=Os09t0469900-01
Chr09	irgsp1_rep	CDS	17876610	17876660	.	+	0	Parent=Os09t0469900-01
Chr09	irgsp1_rep	CDS	17877334	17877390	.	+	0	Parent=Os09t0469900-01
Chr09	irgsp1_rep	CDS	17877505	17877625	.	+	0	Parent=Os09t0469900-01
Chr09	irgsp1_rep	CDS	17877838	17877904	.	+	2	Parent=Os09t0469900-01
Chr09	irgsp1_rep	CDS	17877993	17878034	.	+	1	Parent=Os09t0469900-01
Chr09	irgsp1_rep	CDS	17878280	17878385	.	+	1	Parent=Os09t0469900-01
Chr09	irgsp1_rep	CDS	17878515	17878625	.	+	0	Parent=Os09t0469900-01
Chr09	irgsp1_rep	CDS	17878899	17878970	.	+	0	Parent=Os09t0469900-01
Chr09	irgsp1_rep	CDS	17879074	17879175	.	+	0	Parent=Os09t0469900-01
Chr09	irgsp1_rep	CDS	17879248	17879294	.	+	0	Parent=Os09t0469900-01
Chr09	irgsp1_rep	CDS	17879382	17879409	.	+	1	Parent=Os09t0469900-01
Chr09	irgsp1_rep	CDS	17879612	17879770	.	+	0	Parent=Os09t0469900-01
Chr09	irgsp1_rep	three_prime_UTR	17879771	17880179	.	+	.	Parent=Os09t0469900-01
Chr09	irgsp1_rep	mRNA	17874482	17880197	.	+	.	ID=Os09t0469900-02;Name=Os09t0469900-02;Locus_id=Os09g0469900;Note=Similar to Queuine tRNA-ribosyltransferase.;Transcript_evidence=AK064033 (DDBJ%2C Best hit);ORF_evidence=B9G435 (UniProt);GO=Biological Process: tRNA modification (GO:0006400),Biological Process: queuosine biosynthetic process (GO:0008616),Molecular Function: queuine tRNA-ribosyltransferase activity (GO:0008479);InterPro=Queuine/other tRNA-ribosyltransferase (IPR002616);NIAS_FLcDNA=001-125-B11;Expression=AK064033;TENOR=Os09t0469900-02;KEGG=Os09t0469900-02 (EC:2.4.2.29)
Chr09	irgsp1_rep	five_prime_UTR	17874482	17874634	.	+	.	Parent=Os09t0469900-02
Chr09	irgsp1_rep	five_prime_UTR	17874773	17874814	.	+	.	Parent=Os09t0469900-02
Chr09	irgsp1_rep	CDS	17874815	17874832	.	+	0	Parent=Os09t0469900-02
Chr09	irgsp1_rep	CDS	17875623	17875716	.	+	0	Parent=Os09t0469900-02
Chr09	irgsp1_rep	CDS	17875902	17876149	.	+	2	Parent=Os09t0469900-02
Chr09	irgsp1_rep	three_prime_UTR	17876150	17876660	.	+	.	Parent=Os09t0469900-02
Chr09	irgsp1_rep	three_prime_UTR	17877334	17877390	.	+	.	Parent=Os09t0469900-02
Chr09	irgsp1_rep	three_prime_UTR	17877505	17877625	.	+	.	Parent=Os09t0469900-02
Chr09	irgsp1_rep	three_prime_UTR	17877861	17877904	.	+	.	Parent=Os09t0469900-02
Chr09	irgsp1_rep	three_prime_UTR	17877993	17878034	.	+	.	Parent=Os09t0469900-02
Chr09	irgsp1_rep	three_prime_UTR	17878280	17878385	.	+	.	Parent=Os09t0469900-02
Chr09	irgsp1_rep	three_prime_UTR	17878515	17878625	.	+	.	Parent=Os09t0469900-02
Chr09	irgsp1_rep	three_prime_UTR	17878899	17878970	.	+	.	Parent=Os09t0469900-02
Chr09	irgsp1_rep	three_prime_UTR	17879074	17879175	.	+	.	Parent=Os09t0469900-02
Chr09	irgsp1_rep	three_prime_UTR	17879248	17879294	.	+	.	Parent=Os09t0469900-02
Chr09	irgsp1_rep	three_prime_UTR	17879382	17879409	.	+	.	Parent=Os09t0469900-02
Chr09	irgsp1_rep	three_prime_UTR	17879612	17880197	.	+	.	Parent=Os09t0469900-02
Chr09	irgsp1_rep	mRNA	17881824	17883034	.	+	.	ID=Os09t0469950-00;Name=Os09t0469950-00;Locus_id=Os09g0469950;Note=Similar to plastidic general dicarboxylate transporter.;Transcript_evidence=CT835825 (DDBJ%2C Best hit);ORF_evidence=Q8L801 (UniProt);GO=Biological Process: sodium ion transport (GO:0006814),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Sodium/sulphate symporter (IPR001898);TENOR=Os09t0469950-00;KEGG=Os09t0469950-00
Chr09	irgsp1_rep	five_prime_UTR	17881824	17881874	.	+	.	Parent=Os09t0469950-00
Chr09	irgsp1_rep	CDS	17881875	17882648	.	+	0	Parent=Os09t0469950-00
Chr09	irgsp1_rep	CDS	17882750	17882824	.	+	0	Parent=Os09t0469950-00
Chr09	irgsp1_rep	three_prime_UTR	17882825	17883034	.	+	.	Parent=Os09t0469950-00
Chr09	irgsp1_rep	mRNA	17884858	17885624	.	+	.	ID=Os09t0470000-01;Name=Os09t0470000-01;Locus_id=Os09g0470000;Note=Similar to Plastidic general dicarboxylate transporter.;Transcript_evidence=AK059359 (DDBJ%2C Best hit);ORF_evidence=Q9ZTT4 (UniProt);GO=Biological Process: sodium ion transport (GO:0006814),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Sodium/sulphate symporter (IPR001898);NIAS_FLcDNA=001-026-D11;Expression=AK059359;TENOR=Os09t0470000-01;KEGG=Os09t0470000-01
Chr09	irgsp1_rep	five_prime_UTR	17884858	17884858	.	+	.	Parent=Os09t0470000-01
Chr09	irgsp1_rep	CDS	17884859	17885048	.	+	0	Parent=Os09t0470000-01
Chr09	irgsp1_rep	CDS	17885292	17885407	.	+	2	Parent=Os09t0470000-01
Chr09	irgsp1_rep	three_prime_UTR	17885408	17885624	.	+	.	Parent=Os09t0470000-01
Chr09	irgsp1_rep	mRNA	17903166	17904869	.	+	.	ID=Os09t0470500-01;Name=Os09t0470500-01;Locus_id=Os09g0470500;CGSNL Gene Symbol=HOX4;CGSNL Gene Name=HOMEOBOX GENE 4;Oryzabase Gene Symbol Synonym(s)=Oshox4%2C OsHox4;Oryzabase Gene Name Synonym(s)=rice homeobox gene 4%2C Homeobox-leucine zipper protein HOX4%2C Homeodomain transcription factor HOX4%2C HD-ZIP protein HOX4%2C HOMEOBOX4;Note=Homeodomain leucine zipper protein.;Transcript_evidence=AK099710 (DDBJ%2C Best hit),AK105484 (DDBJ%2C Best hit);ORF_evidence=Q6K498 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: transcription regulatory region sequence-specific DNA binding (GO:0000976),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Helix-turn-helix motif%2C lambda-like repressor (IPR000047),Homeobox (IPR001356),Leucine zipper%2C homeobox-associated (IPR003106),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Homeobox%2C conserved site (IPR017970);NIAS_FLcDNA=J013077J22,001-127-B05;Oryzabase=6155;Expression=AK099710;TENOR=Os09t0470500-01;KEGG=Os09t0470500-01
Chr09	irgsp1_rep	five_prime_UTR	17903166	17903495	.	+	.	Parent=Os09t0470500-01
Chr09	irgsp1_rep	CDS	17903496	17903565	.	+	0	Parent=Os09t0470500-01
Chr09	irgsp1_rep	CDS	17903683	17904029	.	+	2	Parent=Os09t0470500-01
Chr09	irgsp1_rep	CDS	17904156	17904572	.	+	0	Parent=Os09t0470500-01
Chr09	irgsp1_rep	three_prime_UTR	17904573	17904869	.	+	.	Parent=Os09t0470500-01
Chr09	irgsp1_rep	mRNA	17903734	17904549	.	-	.	ID=Os09t0470701-00;Name=Os09t0470701-00;Locus_id=Os09g0470701;Note=Hypothetical gene.;Transcript_evidence=EU943321 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0470701-00;KEGG=Os09t0470701-00
Chr09	irgsp1_rep	five_prime_UTR	17904118	17904549	.	-	.	Parent=Os09t0470701-00
Chr09	irgsp1_rep	CDS	17903734	17904117	.	-	0	Parent=Os09t0470701-00
Chr09	irgsp1_rep	mRNA	17918777	17923862	.	+	.	ID=Os09t0470900-01;Name=Os09t0470900-01;Locus_id=Os09g0470900;Note=Uncharacterised conserved protein UCP013022 domain containing protein.;Transcript_evidence=AK065853 (DDBJ%2C Best hit);ORF_evidence=B7EKG8 (UniProt);InterPro=Uncharacterised conserved protein UCP013022 (IPR016607),Protein of unknown function DUF3550/UPF0682 (IPR022709);NIAS_FLcDNA=J013041H18;Expression=AK065853;TENOR=Os09t0470900-01;KEGG=Os09t0470900-01
Chr09	irgsp1_rep	five_prime_UTR	17918777	17918915	.	+	.	Parent=Os09t0470900-01
Chr09	irgsp1_rep	CDS	17918916	17919440	.	+	0	Parent=Os09t0470900-01
Chr09	irgsp1_rep	CDS	17920299	17920505	.	+	0	Parent=Os09t0470900-01
Chr09	irgsp1_rep	CDS	17920587	17920826	.	+	0	Parent=Os09t0470900-01
Chr09	irgsp1_rep	CDS	17921356	17921422	.	+	0	Parent=Os09t0470900-01
Chr09	irgsp1_rep	CDS	17921523	17921666	.	+	2	Parent=Os09t0470900-01
Chr09	irgsp1_rep	CDS	17921853	17921942	.	+	2	Parent=Os09t0470900-01
Chr09	irgsp1_rep	CDS	17922451	17922626	.	+	2	Parent=Os09t0470900-01
Chr09	irgsp1_rep	CDS	17922705	17922841	.	+	0	Parent=Os09t0470900-01
Chr09	irgsp1_rep	CDS	17923202	17923403	.	+	1	Parent=Os09t0470900-01
Chr09	irgsp1_rep	three_prime_UTR	17923404	17923862	.	+	.	Parent=Os09t0470900-01
Chr09	irgsp1_rep	mRNA	17918809	17923490	.	+	.	ID=Os09t0470900-02;Name=Os09t0470900-02;Locus_id=Os09g0470900;Note=Similar to predicted protein.;Transcript_evidence=AK072191 (DDBJ%2C Best hit);ORF_evidence=B8BCN9 (UniProt);InterPro=Protein of unknown function DUF3550/UPF0682 (IPR022709);NIAS_FLcDNA=J013154D16;Expression=AK072191;TENOR=Os09t0470900-02;KEGG=Os09t0470900-02
Chr09	irgsp1_rep	five_prime_UTR	17918809	17918915	.	+	.	Parent=Os09t0470900-02
Chr09	irgsp1_rep	CDS	17918916	17919440	.	+	0	Parent=Os09t0470900-02
Chr09	irgsp1_rep	CDS	17920299	17920505	.	+	0	Parent=Os09t0470900-02
Chr09	irgsp1_rep	CDS	17920587	17920826	.	+	0	Parent=Os09t0470900-02
Chr09	irgsp1_rep	CDS	17921356	17921422	.	+	0	Parent=Os09t0470900-02
Chr09	irgsp1_rep	CDS	17921523	17921666	.	+	2	Parent=Os09t0470900-02
Chr09	irgsp1_rep	CDS	17921853	17921948	.	+	2	Parent=Os09t0470900-02
Chr09	irgsp1_rep	CDS	17922453	17922463	.	+	2	Parent=Os09t0470900-02
Chr09	irgsp1_rep	three_prime_UTR	17922464	17922626	.	+	.	Parent=Os09t0470900-02
Chr09	irgsp1_rep	three_prime_UTR	17922705	17922841	.	+	.	Parent=Os09t0470900-02
Chr09	irgsp1_rep	three_prime_UTR	17923202	17923490	.	+	.	Parent=Os09t0470900-02
Chr09	irgsp1_rep	mRNA	17929689	17932476	.	+	.	ID=Os09t0471000-01;Name=Os09t0471000-01;Locus_id=Os09g0471000;Note=Similar to cupin%2C RmlC-type.;Transcript_evidence=AK103634 (DDBJ%2C Best hit);ORF_evidence=NP_001147194.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: cysteamine dioxygenase activity (GO:0047800);InterPro=Cupin%2C RmlC-type (IPR011051),Cysteamine dioxygenase (IPR012864),RmlC-like jelly roll fold (IPR014710);NIAS_FLcDNA=J033134B11;Expression=AK103634;TENOR=Os09t0471000-01;KEGG=Os09t0471000-01 (EC:1.13.11.19)
Chr09	irgsp1_rep	five_prime_UTR	17929689	17929769	.	+	.	Parent=Os09t0471000-01
Chr09	irgsp1_rep	CDS	17929770	17929890	.	+	0	Parent=Os09t0471000-01
Chr09	irgsp1_rep	CDS	17929978	17930147	.	+	2	Parent=Os09t0471000-01
Chr09	irgsp1_rep	CDS	17930288	17930533	.	+	0	Parent=Os09t0471000-01
Chr09	irgsp1_rep	three_prime_UTR	17930534	17932476	.	+	.	Parent=Os09t0471000-01
Chr09	irgsp1_rep	mRNA	17930393	17932490	.	+	.	ID=Os09t0471000-02;Name=Os09t0471000-02;Locus_id=Os09g0471000;Note=Similar to cupin%2C RmlC-type.;Transcript_evidence=AK107828 (DDBJ%2C Best hit);ORF_evidence=NP_001147194.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: cysteamine dioxygenase activity (GO:0047800);InterPro=Cysteamine dioxygenase (IPR012864);NIAS_FLcDNA=002-133-G09;Expression=AK107828;TENOR=Os09t0471000-02;KEGG=Os09t0471000-02
Chr09	irgsp1_rep	CDS	17930393	17930435	.	+	0	Parent=Os09t0471000-02
Chr09	irgsp1_rep	CDS	17931142	17931348	.	+	2	Parent=Os09t0471000-02
Chr09	irgsp1_rep	CDS	17932201	17932307	.	+	2	Parent=Os09t0471000-02
Chr09	irgsp1_rep	three_prime_UTR	17932308	17932490	.	+	.	Parent=Os09t0471000-02
Chr09	irgsp1_rep	mRNA	17932737	17935811	.	-	.	ID=Os09t0471100-01;Name=Os09t0471100-01;Locus_id=Os09g0471100;Oryzabase Gene Symbol Synonym(s)=prx122;Oryzabase Gene Name Synonym(s)=class III peroxidase 122;Note=Similar to Peroxidase 17 precursor (EC 1.11.1.7) (Atperox P17) (ATP25a).;Transcript_evidence=AK069281 (DDBJ%2C Best hit);ORF_evidence=Q5I3F1 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J023011F14;Oryzabase=14639;Expression=AK069281;TENOR=Os09t0471100-01;KEGG=Os09t0471100-01 (EC:1.11.1.7)
Chr09	irgsp1_rep	five_prime_UTR	17935667	17935811	.	-	.	Parent=Os09t0471100-01
Chr09	irgsp1_rep	CDS	17935412	17935666	.	-	0	Parent=Os09t0471100-01
Chr09	irgsp1_rep	CDS	17935024	17935215	.	-	0	Parent=Os09t0471100-01
Chr09	irgsp1_rep	CDS	17932922	17933557	.	-	0	Parent=Os09t0471100-01
Chr09	irgsp1_rep	three_prime_UTR	17932737	17932921	.	-	.	Parent=Os09t0471100-01
Chr09	irgsp1_rep	mRNA	17932931	17933605	.	+	.	ID=Os09t0471150-00;Name=Os09t0471150-00;Locus_id=Os09g0471150;Note=Hypothetical gene.;Transcript_evidence=EU942261 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0471150-00;KEGG=Os09t0471150-00
Chr09	irgsp1_rep	CDS	17932931	17933563	.	+	0	Parent=Os09t0471150-00
Chr09	irgsp1_rep	three_prime_UTR	17933564	17933605	.	+	.	Parent=Os09t0471150-00
Chr09	irgsp1_rep	mRNA	17949936	17954035	.	-	.	ID=Os09t0471200-00;Name=Os09t0471200-00;Locus_id=Os09g0471200;Note=Similar to WAK80 - OsWAK receptor-like protein kinase.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001147058.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os09t0471200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	17953553	17954035	.	-	0	Parent=Os09t0471200-00
Chr09	irgsp1_rep	CDS	17952025	17952445	.	-	0	Parent=Os09t0471200-00
Chr09	irgsp1_rep	CDS	17949936	17951110	.	-	2	Parent=Os09t0471200-00
Chr09	irgsp1_rep	mRNA	17960282	17963335	.	+	.	ID=Os09t0471300-01;Name=Os09t0471300-01;Locus_id=Os09g0471300;Note=Non-protein coding transcript.;Transcript_evidence=AK108005 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-135-G10;TENOR=Os09t0471300-01
Chr09	irgsp1_rep	exon	17960282	17960424	.	+	.	Parent=Os09t0471300-01
Chr09	irgsp1_rep	exon	17960675	17960785	.	+	.	Parent=Os09t0471300-01
Chr09	irgsp1_rep	exon	17962835	17962899	.	+	.	Parent=Os09t0471300-01
Chr09	irgsp1_rep	exon	17963028	17963335	.	+	.	Parent=Os09t0471300-01
Chr09	irgsp1_rep	mRNA	17961284	17962785	.	-	.	ID=Os09t0471400-01;Name=Os09t0471400-01;Locus_id=Os09g0471400;CGSNL Gene Symbol=WAK81;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 81;Oryzabase Gene Symbol Synonym(s)=OsWAK81%2C OsRLCK273%2C RLCK273;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 273;Note=Similar to WAK80 - OsWAK receptor-like protein kinase.;Transcript_evidence=AK060211 (DDBJ%2C Best hit);ORF_evidence=NP_001147058.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-002-B07;Oryzabase=6971;TENOR=Os09t0471400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	17962638	17962785	.	-	.	Parent=Os09t0471400-01
Chr09	irgsp1_rep	CDS	17961453	17962637	.	-	0	Parent=Os09t0471400-01
Chr09	irgsp1_rep	three_prime_UTR	17961284	17961452	.	-	.	Parent=Os09t0471400-01
Chr09	irgsp1_rep	mRNA	17968402	17971304	.	-	.	ID=Os09t0471500-01;Name=Os09t0471500-01;Locus_id=Os09g0471500;CGSNL Gene Symbol=WAK82;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 82;Oryzabase Gene Symbol Synonym(s)=OsWAK82%2C OsRLCK274%2C RLCK274;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 274;Note=Conserved hypothetical protein.;Transcript_evidence=AK111541 (DDBJ%2C Best hit);ORF_evidence=A3BZT3 (UniProt);NIAS_FLcDNA=J013038H19;Oryzabase=6972;TENOR=Os09t0471500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	17971264	17971304	.	-	.	Parent=Os09t0471500-01
Chr09	irgsp1_rep	CDS	17970976	17971263	.	-	0	Parent=Os09t0471500-01
Chr09	irgsp1_rep	three_prime_UTR	17970835	17970975	.	-	.	Parent=Os09t0471500-01
Chr09	irgsp1_rep	three_prime_UTR	17969974	17970700	.	-	.	Parent=Os09t0471500-01
Chr09	irgsp1_rep	three_prime_UTR	17968402	17969807	.	-	.	Parent=Os09t0471500-01
Chr09	irgsp1_rep	mRNA	17976511	17979418	.	-	.	ID=Os09t0471550-01;Name=Os09t0471550-01;Locus_id=Os09g0471550;Note=EGF-like calcium-binding domain containing protein.;Transcript_evidence=AK241661 (DDBJ%2C Best hit);ORF_evidence=A3BZT5 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515);InterPro=EGF-like calcium-binding (IPR001881),Epidermal growth factor-like (IPR006210),EGF-like calcium-binding%2C conserved site (IPR018097);NIAS_FLcDNA=J065191I20;TENOR=Os09t0471550-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	17979391	17979418	.	-	.	Parent=Os09t0471550-01
Chr09	irgsp1_rep	CDS	17978965	17979390	.	-	0	Parent=Os09t0471550-01
Chr09	irgsp1_rep	CDS	17978321	17978756	.	-	0	Parent=Os09t0471550-01
Chr09	irgsp1_rep	CDS	17978042	17978220	.	-	2	Parent=Os09t0471550-01
Chr09	irgsp1_rep	three_prime_UTR	17976511	17978041	.	-	.	Parent=Os09t0471550-01
Chr09	irgsp1_rep	mRNA	17987177	17996613	.	-	.	ID=Os09t0471600-01;Name=Os09t0471600-01;Locus_id=Os09g0471600;CGSNL Gene Symbol=WAK84;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 84;Oryzabase Gene Symbol Synonym(s)=OsWAK84;Note=EGF-like calcium-binding domain containing protein.;Transcript_evidence=AK119296 (DDBJ%2C Best hit);ORF_evidence=B9G444 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515);InterPro=EGF-like calcium-binding (IPR001881),Epidermal growth factor-like (IPR006210),EGF-like calcium-binding%2C conserved site (IPR018097);NIAS_FLcDNA=001-130-E06;Oryzabase=6974;TENOR=Os09t0471600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	17996595	17996613	.	-	.	Parent=Os09t0471600-01
Chr09	irgsp1_rep	CDS	17996142	17996594	.	-	0	Parent=Os09t0471600-01
Chr09	irgsp1_rep	CDS	17989344	17989779	.	-	0	Parent=Os09t0471600-01
Chr09	irgsp1_rep	CDS	17989037	17989263	.	-	2	Parent=Os09t0471600-01
Chr09	irgsp1_rep	three_prime_UTR	17987177	17989036	.	-	.	Parent=Os09t0471600-01
Chr09	irgsp1_rep	mRNA	18002520	18008036	.	-	.	ID=Os09t0471800-01;Name=Os09t0471800-01;Locus_id=Os09g0471800;CGSNL Gene Symbol=WAK85;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 85;Oryzabase Gene Symbol Synonym(s)=OsWAK85%2C YK10;Note=Similar to WAK80 - OsWAK receptor-like protein kinase.;Transcript_evidence=AK071360 (DDBJ%2C Best hit);ORF_evidence=NP_001147058.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515);InterPro=EGF-type aspartate/asparagine hydroxylation site (IPR000152),EGF-like calcium-binding (IPR001881),Epidermal growth factor-like (IPR006210),EGF-like calcium-binding%2C conserved site (IPR018097);NIAS_FLcDNA=J023090B05;Oryzabase=6975;TENOR=Os09t0471800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	18007978	18008036	.	-	.	Parent=Os09t0471800-01
Chr09	irgsp1_rep	CDS	18007546	18007977	.	-	0	Parent=Os09t0471800-01
Chr09	irgsp1_rep	CDS	18004460	18004913	.	-	0	Parent=Os09t0471800-01
Chr09	irgsp1_rep	CDS	18004205	18004366	.	-	2	Parent=Os09t0471800-01
Chr09	irgsp1_rep	CDS	18003720	18003865	.	-	2	Parent=Os09t0471800-01
Chr09	irgsp1_rep	three_prime_UTR	18002520	18003719	.	-	.	Parent=Os09t0471800-01
Chr09	irgsp1_rep	mRNA	18013221	18020609	.	+	.	ID=Os09t0471900-01;Name=Os09t0471900-01;Locus_id=Os09g0471900;RAP-DB Gene Symbol Synonym(s)=OsNSUN2;RAP-DB Gene Name Synonym(s)=NOP2/Sun 2;Note=mRNA 5-methylcytosine (m<sup>5</sup>C) methyltransferase%2C Adaptation to high temperature;Transcript_evidence=AK073815;ORF_evidence=Q6K4D4;GO=Molecular Function: RNA binding (GO:0003723),Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: tRNA (cytosine-5-)-methyltransferase activity (GO:0016428);InterPro=S-adenosyl-L-methionine-dependent methyltransferase (IPR029063),RNA (C5-cytosine) methyltransferase (IPR023267),tRNA (C5-cytosine) methyltransferase%2C NCL1 (IPR023270),SAM-dependent methyltransferase RsmB/NOP2-type (IPR001678),Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p%2C conserved site (IPR018314);NIAS_FLcDNA=J033065D05;Manual Curation=April 13%2C 2020;Literature_PMID=32275888;Expression=AK073815;TENOR=Os09t0471900-01;KEGG=Os09t0471900-01;Subcellular location=nucleus (GO:0005634)
Chr09	irgsp1_rep	five_prime_UTR	18013221	18013376	.	+	.	Parent=Os09t0471900-01
Chr09	irgsp1_rep	CDS	18013377	18013577	.	+	0	Parent=Os09t0471900-01
Chr09	irgsp1_rep	CDS	18013945	18014033	.	+	0	Parent=Os09t0471900-01
Chr09	irgsp1_rep	CDS	18014827	18014893	.	+	1	Parent=Os09t0471900-01
Chr09	irgsp1_rep	CDS	18014980	18015095	.	+	0	Parent=Os09t0471900-01
Chr09	irgsp1_rep	CDS	18015629	18015695	.	+	1	Parent=Os09t0471900-01
Chr09	irgsp1_rep	CDS	18015809	18015857	.	+	0	Parent=Os09t0471900-01
Chr09	irgsp1_rep	CDS	18016281	18016366	.	+	2	Parent=Os09t0471900-01
Chr09	irgsp1_rep	CDS	18016476	18016729	.	+	0	Parent=Os09t0471900-01
Chr09	irgsp1_rep	CDS	18016809	18016864	.	+	1	Parent=Os09t0471900-01
Chr09	irgsp1_rep	CDS	18017334	18017419	.	+	2	Parent=Os09t0471900-01
Chr09	irgsp1_rep	CDS	18017698	18017790	.	+	0	Parent=Os09t0471900-01
Chr09	irgsp1_rep	CDS	18018441	18018870	.	+	0	Parent=Os09t0471900-01
Chr09	irgsp1_rep	CDS	18018989	18019512	.	+	2	Parent=Os09t0471900-01
Chr09	irgsp1_rep	CDS	18019613	18019841	.	+	0	Parent=Os09t0471900-01
Chr09	irgsp1_rep	CDS	18019922	18020217	.	+	2	Parent=Os09t0471900-01
Chr09	irgsp1_rep	three_prime_UTR	18020218	18020609	.	+	.	Parent=Os09t0471900-01
Chr09	irgsp1_rep	mRNA	18018439	18020611	.	+	.	ID=Os09t0471900-02;Name=Os09t0471900-02;Locus_id=Os09g0471900;CGSNL Gene Symbol=NSUN2;Oryzabase Gene Symbol Synonym(s)=OsNSUN2;Oryzabase Gene Name Synonym(s)=NOP/SUN family protein 2;Note=Hypothetical conserved gene.;Transcript_evidence=AK062110 (DDBJ%2C Best hit);ORF_evidence=B8BCP5 (UniProt);NIAS_FLcDNA=001-045-B08;Oryzabase=23584;Expression=AK062110;TENOR=Os09t0471900-02;KEGG=Os09t0471900-02
Chr09	irgsp1_rep	five_prime_UTR	18018439	18018440	.	+	.	Parent=Os09t0471900-02
Chr09	irgsp1_rep	CDS	18018441	18018870	.	+	0	Parent=Os09t0471900-02
Chr09	irgsp1_rep	CDS	18018989	18019512	.	+	2	Parent=Os09t0471900-02
Chr09	irgsp1_rep	CDS	18019613	18019841	.	+	0	Parent=Os09t0471900-02
Chr09	irgsp1_rep	CDS	18019922	18020217	.	+	2	Parent=Os09t0471900-02
Chr09	irgsp1_rep	three_prime_UTR	18020218	18020611	.	+	.	Parent=Os09t0471900-02
Chr09	irgsp1_rep	mRNA	18013349	18020164	.	-	.	ID=Os09t0472000-00;Name=Os09t0472000-00;Locus_id=Os09g0472000;Note=Hypothetical protein.;Transcript_evidence=tplb0055k03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0472000-00
Chr09	irgsp1_rep	five_prime_UTR	18019904	18020164	.	-	.	Parent=Os09t0472000-00
Chr09	irgsp1_rep	five_prime_UTR	18019620	18019831	.	-	.	Parent=Os09t0472000-00
Chr09	irgsp1_rep	five_prime_UTR	18019408	18019520	.	-	.	Parent=Os09t0472000-00
Chr09	irgsp1_rep	CDS	18019186	18019407	.	-	0	Parent=Os09t0472000-00
Chr09	irgsp1_rep	three_prime_UTR	18019024	18019185	.	-	.	Parent=Os09t0472000-00
Chr09	irgsp1_rep	three_prime_UTR	18018729	18018875	.	-	.	Parent=Os09t0472000-00
Chr09	irgsp1_rep	three_prime_UTR	18018433	18018651	.	-	.	Parent=Os09t0472000-00
Chr09	irgsp1_rep	three_prime_UTR	18017696	18017783	.	-	.	Parent=Os09t0472000-00
Chr09	irgsp1_rep	three_prime_UTR	18017332	18017417	.	-	.	Parent=Os09t0472000-00
Chr09	irgsp1_rep	three_prime_UTR	18016317	18016862	.	-	.	Parent=Os09t0472000-00
Chr09	irgsp1_rep	three_prime_UTR	18015627	18015888	.	-	.	Parent=Os09t0472000-00
Chr09	irgsp1_rep	three_prime_UTR	18014978	18015093	.	-	.	Parent=Os09t0472000-00
Chr09	irgsp1_rep	three_prime_UTR	18014823	18014888	.	-	.	Parent=Os09t0472000-00
Chr09	irgsp1_rep	three_prime_UTR	18013928	18014029	.	-	.	Parent=Os09t0472000-00
Chr09	irgsp1_rep	three_prime_UTR	18013349	18013567	.	-	.	Parent=Os09t0472000-00
Chr09	irgsp1_rep	mRNA	18034121	18039233	.	+	.	ID=Os09t0472100-01;Name=Os09t0472100-01;Locus_id=Os09g0472100;CGSNL Gene Symbol=ABCG22;CGSNL Gene Name=ABC TRANSPORTER G FAMILY MEMBER 22;Oryzabase Gene Symbol Synonym(s)=OsABCG22;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 22;Note=Similar to ABC transporter.;Transcript_evidence=AK120390 (DDBJ%2C Best hit);ORF_evidence=XP_002306299.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC-2 type transporter (IPR013525),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=J013073P15;Oryzabase=11999;Expression=AK120390;TENOR=Os09t0472100-01;KEGG=Os09t0472100-01
Chr09	irgsp1_rep	five_prime_UTR	18034121	18034216	.	+	.	Parent=Os09t0472100-01
Chr09	irgsp1_rep	CDS	18034217	18034670	.	+	0	Parent=Os09t0472100-01
Chr09	irgsp1_rep	CDS	18034893	18034972	.	+	2	Parent=Os09t0472100-01
Chr09	irgsp1_rep	CDS	18035082	18035546	.	+	0	Parent=Os09t0472100-01
Chr09	irgsp1_rep	CDS	18037225	18037311	.	+	0	Parent=Os09t0472100-01
Chr09	irgsp1_rep	CDS	18037432	18037560	.	+	0	Parent=Os09t0472100-01
Chr09	irgsp1_rep	CDS	18037685	18037876	.	+	0	Parent=Os09t0472100-01
Chr09	irgsp1_rep	CDS	18038044	18038130	.	+	0	Parent=Os09t0472100-01
Chr09	irgsp1_rep	CDS	18038358	18039029	.	+	0	Parent=Os09t0472100-01
Chr09	irgsp1_rep	three_prime_UTR	18039030	18039233	.	+	.	Parent=Os09t0472100-01
Chr09	irgsp1_rep	mRNA	18034414	18039006	.	-	.	ID=Os09t0472150-00;Name=Os09t0472150-00;Locus_id=Os09g0472150;Note=Hypothetical protein.;Transcript_evidence=tplb0024i20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0472150-00
Chr09	irgsp1_rep	five_prime_UTR	18039006	18039006	.	-	.	Parent=Os09t0472150-00
Chr09	irgsp1_rep	CDS	18038400	18039005	.	-	0	Parent=Os09t0472150-00
Chr09	irgsp1_rep	three_prime_UTR	18038359	18038399	.	-	.	Parent=Os09t0472150-00
Chr09	irgsp1_rep	three_prime_UTR	18038024	18038131	.	-	.	Parent=Os09t0472150-00
Chr09	irgsp1_rep	three_prime_UTR	18037683	18037860	.	-	.	Parent=Os09t0472150-00
Chr09	irgsp1_rep	three_prime_UTR	18037191	18037471	.	-	.	Parent=Os09t0472150-00
Chr09	irgsp1_rep	three_prime_UTR	18035071	18035515	.	-	.	Parent=Os09t0472150-00
Chr09	irgsp1_rep	three_prime_UTR	18034414	18034728	.	-	.	Parent=Os09t0472150-00
Chr09	irgsp1_rep	mRNA	18044671	18050946	.	+	.	ID=Os09t0472200-00;Name=Os09t0472200-00;Locus_id=Os09g0472200;CGSNL Gene Symbol=ABCG23;CGSNL Gene Name=ABC TRANSPORTER G FAMILY MEMBER 23;Oryzabase Gene Symbol Synonym(s)=OsABCG23;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 23;Note=Similar to white-brown-complex ABC transporter family.;Transcript_evidence=ab initio prediction;ORF_evidence=XP_002306299.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC-2 type transporter (IPR013525),ABC transporter%2C conserved site (IPR017871);Oryzabase=12000;TENOR=Os09t0472200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	18044671	18045139	.	+	0	Parent=Os09t0472200-00
Chr09	irgsp1_rep	CDS	18045581	18045660	.	+	2	Parent=Os09t0472200-00
Chr09	irgsp1_rep	CDS	18045773	18046237	.	+	0	Parent=Os09t0472200-00
Chr09	irgsp1_rep	CDS	18049321	18049407	.	+	0	Parent=Os09t0472200-00
Chr09	irgsp1_rep	CDS	18049538	18049633	.	+	0	Parent=Os09t0472200-00
Chr09	irgsp1_rep	CDS	18049753	18049944	.	+	0	Parent=Os09t0472200-00
Chr09	irgsp1_rep	CDS	18050060	18050146	.	+	0	Parent=Os09t0472200-00
Chr09	irgsp1_rep	CDS	18050272	18050946	.	+	0	Parent=Os09t0472200-00
Chr09	irgsp1_rep	mRNA	18049940	18054249	.	-	.	ID=Os09t0472301-01;Name=Os09t0472301-01;Locus_id=Os09g0472301;Note=Non-protein coding transcript.;Transcript_evidence=AK288203 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090008K12;TENOR=Os09t0472301-01
Chr09	irgsp1_rep	exon	18049940	18054249	.	-	.	Parent=Os09t0472301-01
Chr09	irgsp1_rep	mRNA	18058240	18058985	.	+	.	ID=Os09t0472700-00;Name=Os09t0472700-00;Locus_id=Os09g0472700;Note=Similar to blight-associated protein p12.;Transcript_evidence=EU961552 (DDBJ);ORF_evidence=NP_001148968.1 (RefSeq);InterPro=Expansin/pollen allergen%2C DPBB domain (IPR007112),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);TENOR=Os09t0472700-00;KEGG=Os09t0472700-00
Chr09	irgsp1_rep	CDS	18058240	18058441	.	+	0	Parent=Os09t0472700-00
Chr09	irgsp1_rep	CDS	18058543	18058985	.	+	2	Parent=Os09t0472700-00
Chr09	irgsp1_rep	mRNA	18067436	18068411	.	+	.	ID=Os09t0472900-01;Name=Os09t0472900-01;Locus_id=Os09g0472900;Note=Similar to Blight-associated protein p12 precursor.;Transcript_evidence=AK063132 (DDBJ%2C Best hit);ORF_evidence=NP_001148968.1 (RefSeq);InterPro=Expansin/pollen allergen%2C DPBB domain (IPR007112),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);NIAS_FLcDNA=001-111-F08;Expression=AK063132;TENOR=Os09t0472900-01;KEGG=Os09t0472900-01
Chr09	irgsp1_rep	five_prime_UTR	18067436	18067527	.	+	.	Parent=Os09t0472900-01
Chr09	irgsp1_rep	CDS	18067528	18067648	.	+	0	Parent=Os09t0472900-01
Chr09	irgsp1_rep	CDS	18067749	18068025	.	+	2	Parent=Os09t0472900-01
Chr09	irgsp1_rep	CDS	18068161	18068167	.	+	1	Parent=Os09t0472900-01
Chr09	irgsp1_rep	three_prime_UTR	18068168	18068411	.	+	.	Parent=Os09t0472900-01
Chr09	irgsp1_rep	mRNA	18077433	18077833	.	-	.	ID=Os09t0473050-00;Name=Os09t0473050-00;Locus_id=Os09g0473050;Note=Hypothetical protein.;Transcript_evidence=AK372466 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0473050-00
Chr09	irgsp1_rep	CDS	18077433	18077833	.	-	0	Parent=Os09t0473050-00
Chr09	irgsp1_rep	mRNA	18084072	18084827	.	+	.	ID=Os09t0473200-00;Name=Os09t0473200-00;Locus_id=Os09g0473200;Note=Similar to blight-associated protein p12.;Transcript_evidence=EU961552 (DDBJ);ORF_evidence=NP_001148968.1 (RefSeq);InterPro=Expansin/pollen allergen%2C DPBB domain (IPR007112),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);TENOR=Os09t0473200-00;KEGG=Os09t0473200-00
Chr09	irgsp1_rep	five_prime_UTR	18084072	18084096	.	+	.	Parent=Os09t0473200-00
Chr09	irgsp1_rep	CDS	18084097	18084208	.	+	0	Parent=Os09t0473200-00
Chr09	irgsp1_rep	CDS	18084487	18084827	.	+	2	Parent=Os09t0473200-00
Chr09	irgsp1_rep	mRNA	18085556	18087723	.	-	.	ID=Os09t0473300-01;Name=Os09t0473300-01;Locus_id=Os09g0473300;CGSNL Gene Symbol=DLN226;CGSNL Gene Name=DLN REPRESSOR 226;Oryzabase Gene Symbol Synonym(s)=OsDLN226%2C OsDLN226a%2C OsDLN226b%2C DLN226a%2C DLN226b;Oryzabase Gene Name Synonym(s)=DLN repressor 226%2C DLN motif protein 226;Note=Similar to Methylcytosine binding domain protein.;Transcript_evidence=AK058514 (DDBJ%2C Best hit);ORF_evidence=B3GS43 (UniProt);NIAS_FLcDNA=001-016-G11;Oryzabase=23230;TENOR=Os09t0473300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	18087722	18087723	.	-	.	Parent=Os09t0473300-01
Chr09	irgsp1_rep	CDS	18086684	18087721	.	-	0	Parent=Os09t0473300-01
Chr09	irgsp1_rep	CDS	18085838	18086230	.	-	0	Parent=Os09t0473300-01
Chr09	irgsp1_rep	three_prime_UTR	18085556	18085837	.	-	.	Parent=Os09t0473300-01
Chr09	irgsp1_rep	mRNA	18089890	18090832	.	-	.	ID=Os09t0473350-00;Name=Os09t0473350-00;Locus_id=Os09g0473350;CGSNL Gene Symbol=DLN226;CGSNL Gene Name=DLN REPRESSOR 226;Oryzabase Gene Symbol Synonym(s)=OsDLN226%2C OsDLN226a%2C OsDLN226b%2C DLN226a%2C DLN226b;Oryzabase Gene Name Synonym(s)=DLN repressor 226%2C DLN motif protein 226;Note=Similar to methylcytosine binding domain protein.;Transcript_evidence=CT835883 (DDBJ%2C Best hit);ORF_evidence=B3GS43 (UniProt);Oryzabase=23230;TENOR=Os09t0473350-00;KEGG=Os09t0473350-00
Chr09	irgsp1_rep	five_prime_UTR	18090760	18090832	.	-	.	Parent=Os09t0473350-00
Chr09	irgsp1_rep	CDS	18089977	18090759	.	-	0	Parent=Os09t0473350-00
Chr09	irgsp1_rep	three_prime_UTR	18089890	18089976	.	-	.	Parent=Os09t0473350-00
Chr09	irgsp1_rep	mRNA	18091018	18092234	.	+	.	ID=Os09t0473400-00;Name=Os09t0473400-00;Locus_id=Os09g0473400;Note=Peptidase C12%2C ubiquitin carboxyl-terminal hydrolase 1 domain containing protein.;Transcript_evidence=EU976366 (DDBJ);ORF_evidence=NP_192633.2 (RefSeq);InterPro=Plant organelle RNA recognition domain (IPR021099);TENOR=Os09t0473400-00;KEGG=Os09t0473400-00
Chr09	irgsp1_rep	five_prime_UTR	18091018	18091034	.	+	.	Parent=Os09t0473400-00
Chr09	irgsp1_rep	CDS	18091035	18092234	.	+	0	Parent=Os09t0473400-00
Chr09	irgsp1_rep	mRNA	18091107	18092224	.	-	.	ID=Os09t0473502-00;Name=Os09t0473502-00;Locus_id=Os09g0473502;Note=Hypothetical gene.;Transcript_evidence=CT835876 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os09t0473502-00
Chr09	irgsp1_rep	five_prime_UTR	18092033	18092224	.	-	.	Parent=Os09t0473502-00
Chr09	irgsp1_rep	CDS	18091107	18092032	.	-	0	Parent=Os09t0473502-00
Chr09	irgsp1_rep	mRNA	18097456	18098276	.	+	.	ID=Os09t0473600-00;Name=Os09t0473600-00;Locus_id=Os09g0473600;Note=Hypothetical conserved gene.;Transcript_evidence=EU973630 (DDBJ);ORF_evidence=B9G446 (UniProt);TENOR=Os09t0473600-00;KEGG=Os09t0473600-00
Chr09	irgsp1_rep	five_prime_UTR	18097456	18097716	.	+	.	Parent=Os09t0473600-00
Chr09	irgsp1_rep	CDS	18097717	18098199	.	+	0	Parent=Os09t0473600-00
Chr09	irgsp1_rep	three_prime_UTR	18098200	18098276	.	+	.	Parent=Os09t0473600-00
Chr09	irgsp1_rep	mRNA	18098820	18100385	.	-	.	ID=Os09t0473650-01;Name=Os09t0473650-01;Locus_id=Os09g0473650;Note=Hypothetical protein.;Transcript_evidence=AK242687 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090034C04;TENOR=Os09t0473650-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	18100385	18100385	.	-	.	Parent=Os09t0473650-01
Chr09	irgsp1_rep	CDS	18100010	18100384	.	-	0	Parent=Os09t0473650-01
Chr09	irgsp1_rep	CDS	18099123	18099128	.	-	0	Parent=Os09t0473650-01
Chr09	irgsp1_rep	three_prime_UTR	18098820	18099122	.	-	.	Parent=Os09t0473650-01
Chr09	irgsp1_rep	mRNA	18109051	18109798	.	-	.	ID=Os09t0473800-01;Name=Os09t0473800-01;Locus_id=Os09g0473800;Note=Hypothetical conserved gene.;Transcript_evidence=AK108803 (DDBJ%2C Best hit);ORF_evidence=A3BZV2 (UniProt);NIAS_FLcDNA=002-151-C11;Expression=AK108803;TENOR=Os09t0473800-01;KEGG=Os09t0473800-01
Chr09	irgsp1_rep	five_prime_UTR	18109545	18109798	.	-	.	Parent=Os09t0473800-01
Chr09	irgsp1_rep	five_prime_UTR	18109314	18109466	.	-	.	Parent=Os09t0473800-01
Chr09	irgsp1_rep	CDS	18109134	18109313	.	-	0	Parent=Os09t0473800-01
Chr09	irgsp1_rep	three_prime_UTR	18109051	18109133	.	-	.	Parent=Os09t0473800-01
Chr09	irgsp1_rep	mRNA	18111152	18111517	.	-	.	ID=Os09t0473883-00;Name=Os09t0473883-00;Locus_id=Os09g0473883;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8BCP9 (UniProt);TENOR=Os09t0473883-00
Chr09	irgsp1_rep	CDS	18111152	18111517	.	-	0	Parent=Os09t0473883-00
Chr09	irgsp1_rep	mRNA	18111608	18121156	.	+	.	ID=Os09t0473966-00;Name=Os09t0473966-00;Locus_id=Os09g0473966;Note=Hypothetical conserved gene.;Transcript_evidence=CT835848 (DDBJ%2C Best hit);ORF_evidence=A2Z2A7 (UniProt);TENOR=Os09t0473966-00;KEGG=Os09t0473966-00
Chr09	irgsp1_rep	five_prime_UTR	18111608	18111609	.	+	.	Parent=Os09t0473966-00
Chr09	irgsp1_rep	CDS	18111610	18111695	.	+	0	Parent=Os09t0473966-00
Chr09	irgsp1_rep	CDS	18113359	18113462	.	+	1	Parent=Os09t0473966-00
Chr09	irgsp1_rep	CDS	18120546	18120597	.	+	2	Parent=Os09t0473966-00
Chr09	irgsp1_rep	CDS	18120672	18120882	.	+	1	Parent=Os09t0473966-00
Chr09	irgsp1_rep	three_prime_UTR	18120883	18121156	.	+	.	Parent=Os09t0473966-00
Chr09	irgsp1_rep	mRNA	18122627	18123463	.	-	.	ID=Os09t0474000-01;Name=Os09t0474000-01;Locus_id=Os09g0474000;RAP-DB Gene Symbol Synonym(s)=OsbZIP73%2C bZIP73%2C OsTFX1;RAP-DB Gene Name Synonym(s)=bZIP transcription factor 73;CGSNL Gene Symbol=TFX1;CGSNL Gene Name=BZIP TRANSCRIPTION FACTOR TFX1;Oryzabase Gene Symbol Synonym(s)=OsbZIP73%2C bZIP73%2C OsTFX1;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 73%2C bZIP transcription factor OsTFX1;Note=bZIP transcription factor%2C Cold tolerance%2C Mediation of host susceptibility to disease;Transcript_evidence=AK108319;ORF_evidence=Q69JJ9;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA-binding transcription factor activity (GO:0003700);InterPro=Basic-leucine zipper domain (IPR004827);NIAS_FLcDNA=002-141-G12;Manual Curation=August 20%2C 2018;Literature_PMID=30120236,17563377;Oryzabase=10153;Expression=AK108319;TENOR=Os09t0474000-01;KEGG=Os09t0474000-01;Subcellular location=nucleus (GO:0005634)
Chr09	irgsp1_rep	five_prime_UTR	18123361	18123463	.	-	.	Parent=Os09t0474000-01
Chr09	irgsp1_rep	CDS	18122839	18123360	.	-	0	Parent=Os09t0474000-01
Chr09	irgsp1_rep	three_prime_UTR	18122627	18122838	.	-	.	Parent=Os09t0474000-01
Chr09	irgsp1_rep	mRNA	18134399	18136393	.	+	.	ID=Os09t0474051-01;Name=Os09t0474051-01;Locus_id=Os09g0474051;RAP-DB Gene Symbol Synonym(s)=DUA1;CGSNL Gene Symbol=DUA1;Oryzabase Gene Symbol Synonym(s)=OsDUA1;Note=RNA editing factor%2C RNA-binding protein%2C Pentatricopeptide repeat (PPR) protein family member%2C Chloroplast development at low temperature;Transcript_evidence=AK287443;ORF_evidence=A0A0P0XPC3;GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Tetratricopeptide-like helical domain superfamily (IPR011990),DYW domain (IPR032867),Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J043016D20;Manual Curation=October 11%2C 2018;Literature_PMID=30295937;Oryzabase=22602;TENOR=Os09t0474051-01;KEGG=Os09t0474051-01;Subcellular location=chloroplast (GO:0009507)
Chr09	irgsp1_rep	five_prime_UTR	18134399	18134555	.	+	.	Parent=Os09t0474051-01
Chr09	irgsp1_rep	CDS	18134556	18136313	.	+	0	Parent=Os09t0474051-01
Chr09	irgsp1_rep	three_prime_UTR	18136314	18136393	.	+	.	Parent=Os09t0474051-01
Chr09	irgsp1_rep	mRNA	18141491	18144511	.	+	.	ID=Os09t0474100-01;Name=Os09t0474100-01;Locus_id=Os09g0474100;Oryzabase Gene Symbol Synonym(s)=OsbHLH085%2C DLN227%2C OsDLN227;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 085%2C DLN repressor 227%2C DLN motif protein 227;Note=Similar to TA1 protein (Fragment).;Transcript_evidence=AK121418 (DDBJ%2C Best hit);ORF_evidence=NP_001152551.1 (RefSeq);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J023133H05;Oryzabase=15372;Expression=AK121418;TENOR=Os09t0474100-01;KEGG=Os09t0474100-01
Chr09	irgsp1_rep	five_prime_UTR	18141491	18141758	.	+	.	Parent=Os09t0474100-01
Chr09	irgsp1_rep	CDS	18141759	18142325	.	+	0	Parent=Os09t0474100-01
Chr09	irgsp1_rep	CDS	18142440	18142664	.	+	0	Parent=Os09t0474100-01
Chr09	irgsp1_rep	CDS	18142753	18142818	.	+	0	Parent=Os09t0474100-01
Chr09	irgsp1_rep	CDS	18142919	18142987	.	+	0	Parent=Os09t0474100-01
Chr09	irgsp1_rep	CDS	18143162	18143233	.	+	0	Parent=Os09t0474100-01
Chr09	irgsp1_rep	CDS	18143323	18143499	.	+	0	Parent=Os09t0474100-01
Chr09	irgsp1_rep	CDS	18143877	18143987	.	+	0	Parent=Os09t0474100-01
Chr09	irgsp1_rep	three_prime_UTR	18143988	18144511	.	+	.	Parent=Os09t0474100-01
Chr09	irgsp1_rep	mRNA	18150645	18155423	.	-	.	ID=Os09t0474300-01;Name=Os09t0474300-01;Locus_id=Os09g0474300;CGSNL Gene Symbol=HSP74.8;CGSNL Gene Name=74.8 KDA CLASS I HEAT SHOCK PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsHsp74.8%2C OsHSP74.8;Oryzabase Gene Name Synonym(s)=74.8 kDa heat shock protein%2C 74.8-kD heat shock protein;Note=Similar to Heat-shock protein precursor.;Transcript_evidence=AK073817 (DDBJ%2C Best hit);ORF_evidence=Q43638 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: response to stress (GO:0006950),Molecular Function: ATP binding (GO:0005524),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein Hsp90 (IPR001404),ATPase-like%2C ATP-binding domain (IPR003594),Heat shock protein Hsp90%2C conserved site (IPR019805),Ribosomal protein S5 domain 2-type fold (IPR020568),Heat shock protein Hsp90%2C N-terminal (IPR020575);NIAS_FLcDNA=J033068G01;Oryzabase=11894;Expression=AK073817;TENOR=Os09t0474300-01;KEGG=Os09t0474300-01
Chr09	irgsp1_rep	five_prime_UTR	18155309	18155423	.	-	.	Parent=Os09t0474300-01
Chr09	irgsp1_rep	CDS	18155039	18155308	.	-	0	Parent=Os09t0474300-01
Chr09	irgsp1_rep	CDS	18154757	18154830	.	-	0	Parent=Os09t0474300-01
Chr09	irgsp1_rep	CDS	18154514	18154639	.	-	1	Parent=Os09t0474300-01
Chr09	irgsp1_rep	CDS	18154334	18154427	.	-	1	Parent=Os09t0474300-01
Chr09	irgsp1_rep	CDS	18154136	18154219	.	-	0	Parent=Os09t0474300-01
Chr09	irgsp1_rep	CDS	18153859	18154002	.	-	0	Parent=Os09t0474300-01
Chr09	irgsp1_rep	CDS	18153617	18153733	.	-	0	Parent=Os09t0474300-01
Chr09	irgsp1_rep	CDS	18153476	18153517	.	-	0	Parent=Os09t0474300-01
Chr09	irgsp1_rep	CDS	18153309	18153389	.	-	0	Parent=Os09t0474300-01
Chr09	irgsp1_rep	CDS	18153057	18153161	.	-	0	Parent=Os09t0474300-01
Chr09	irgsp1_rep	CDS	18152830	18152970	.	-	0	Parent=Os09t0474300-01
Chr09	irgsp1_rep	CDS	18152637	18152729	.	-	0	Parent=Os09t0474300-01
Chr09	irgsp1_rep	CDS	18152442	18152519	.	-	0	Parent=Os09t0474300-01
Chr09	irgsp1_rep	CDS	18151914	18152363	.	-	0	Parent=Os09t0474300-01
Chr09	irgsp1_rep	CDS	18151765	18151830	.	-	0	Parent=Os09t0474300-01
Chr09	irgsp1_rep	three_prime_UTR	18151656	18151764	.	-	.	Parent=Os09t0474300-01
Chr09	irgsp1_rep	three_prime_UTR	18151460	18151565	.	-	.	Parent=Os09t0474300-01
Chr09	irgsp1_rep	three_prime_UTR	18151237	18151326	.	-	.	Parent=Os09t0474300-01
Chr09	irgsp1_rep	three_prime_UTR	18150645	18151147	.	-	.	Parent=Os09t0474300-01
Chr09	irgsp1_rep	mRNA	18151038	18152298	.	+	.	ID=Os09t0474350-00;Name=Os09t0474350-00;Locus_id=Os09g0474350;Note=Non-protein coding transcript.;Transcript_evidence=BT017162 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0474350-00
Chr09	irgsp1_rep	exon	18151038	18151190	.	+	.	Parent=Os09t0474350-00
Chr09	irgsp1_rep	exon	18151411	18151567	.	+	.	Parent=Os09t0474350-00
Chr09	irgsp1_rep	exon	18151653	18151813	.	+	.	Parent=Os09t0474350-00
Chr09	irgsp1_rep	exon	18151890	18152012	.	+	.	Parent=Os09t0474350-00
Chr09	irgsp1_rep	exon	18152107	18152298	.	+	.	Parent=Os09t0474350-00
Chr09	irgsp1_rep	mRNA	18156484	18156867	.	+	.	ID=Os09t0474400-00;Name=Os09t0474400-00;Locus_id=Os09g0474400;Note=Similar to methyltransferase small domain.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001147435.1 (RefSeq);InterPro=Pentatricopeptide repeat (IPR002885);TENOR=Os09t0474400-00
Chr09	irgsp1_rep	CDS	18156484	18156867	.	+	0	Parent=Os09t0474400-00
Chr09	irgsp1_rep	mRNA	18159760	18160621	.	+	.	ID=Os09t0474501-01;Name=Os09t0474501-01;Locus_id=Os09g0474501;Note=Similar to Sodium/hydrogen exchanger family protein.;Transcript_evidence=AK241248 (DDBJ%2C Best hit);ORF_evidence=Q2QYR3 (UniProt);NIAS_FLcDNA=J065129D17;TENOR=Os09t0474501-01;KEGG=Os09t0474501-01
Chr09	irgsp1_rep	CDS	18159760	18160176	.	+	0	Parent=Os09t0474501-01
Chr09	irgsp1_rep	three_prime_UTR	18160177	18160621	.	+	.	Parent=Os09t0474501-01
Chr09	irgsp1_rep	mRNA	18174555	18178935	.	-	.	ID=Os09t0474800-01;Name=Os09t0474800-01;Locus_id=Os09g0474800;Note=Phosphatidylinositol 3- and 4-kinase%2C catalytic domain containing protein.;Transcript_evidence=AK100674 (DDBJ%2C Best hit);ORF_evidence=XP_002875236.1 (RefSeq);GO=Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Phosphatidylinositol 3-/4-kinase%2C catalytic (IPR000403);NIAS_FLcDNA=J023113B13;Expression=AK100674;TENOR=Os09t0474800-01;KEGG=Os09t0474800-01
Chr09	irgsp1_rep	five_prime_UTR	18178682	18178935	.	-	.	Parent=Os09t0474800-01
Chr09	irgsp1_rep	five_prime_UTR	18176921	18177132	.	-	.	Parent=Os09t0474800-01
Chr09	irgsp1_rep	CDS	18174938	18176920	.	-	0	Parent=Os09t0474800-01
Chr09	irgsp1_rep	three_prime_UTR	18174555	18174937	.	-	.	Parent=Os09t0474800-01
Chr09	irgsp1_rep	mRNA	18174589	18177971	.	-	.	ID=Os09t0474800-02;Name=Os09t0474800-02;Locus_id=Os09g0474800;Note=Phosphatidylinositol 3- and 4-kinase%2C catalytic domain containing protein.;Transcript_evidence=AK066715 (DDBJ%2C Best hit);ORF_evidence=XP_002875236.1 (RefSeq);GO=Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Phosphatidylinositol 3-/4-kinase%2C catalytic (IPR000403);NIAS_FLcDNA=J013088A05;Expression=AK066715;TENOR=Os09t0474800-02;KEGG=Os09t0474800-02
Chr09	irgsp1_rep	five_prime_UTR	18176921	18177971	.	-	.	Parent=Os09t0474800-02
Chr09	irgsp1_rep	CDS	18174938	18176920	.	-	0	Parent=Os09t0474800-02
Chr09	irgsp1_rep	three_prime_UTR	18174589	18174937	.	-	.	Parent=Os09t0474800-02
Chr09	irgsp1_rep	mRNA	18207621	18214963	.	+	.	ID=Os09t0475400-01;Name=Os09t0475400-01;Locus_id=Os09g0475400;Oryzabase Gene Symbol Synonym(s)=OsbHLH032;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 032;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=AK071315 (DDBJ%2C Best hit);ORF_evidence=B6SVP6 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J023084K14;Oryzabase=15323;Expression=AK071315;TENOR=Os09t0475400-01;KEGG=Os09t0475400-01
Chr09	irgsp1_rep	five_prime_UTR	18207621	18207842	.	+	.	Parent=Os09t0475400-01
Chr09	irgsp1_rep	CDS	18207843	18207855	.	+	0	Parent=Os09t0475400-01
Chr09	irgsp1_rep	CDS	18207997	18208104	.	+	2	Parent=Os09t0475400-01
Chr09	irgsp1_rep	CDS	18208624	18208875	.	+	2	Parent=Os09t0475400-01
Chr09	irgsp1_rep	CDS	18209460	18209666	.	+	2	Parent=Os09t0475400-01
Chr09	irgsp1_rep	CDS	18211985	18212111	.	+	2	Parent=Os09t0475400-01
Chr09	irgsp1_rep	CDS	18212873	18212942	.	+	1	Parent=Os09t0475400-01
Chr09	irgsp1_rep	CDS	18213031	18213126	.	+	0	Parent=Os09t0475400-01
Chr09	irgsp1_rep	CDS	18213234	18213272	.	+	0	Parent=Os09t0475400-01
Chr09	irgsp1_rep	CDS	18213365	18213575	.	+	0	Parent=Os09t0475400-01
Chr09	irgsp1_rep	CDS	18213688	18213829	.	+	2	Parent=Os09t0475400-01
Chr09	irgsp1_rep	CDS	18213926	18214058	.	+	1	Parent=Os09t0475400-01
Chr09	irgsp1_rep	CDS	18214413	18214529	.	+	0	Parent=Os09t0475400-01
Chr09	irgsp1_rep	three_prime_UTR	18214530	18214963	.	+	.	Parent=Os09t0475400-01
Chr09	irgsp1_rep	mRNA	18209437	18214882	.	+	.	ID=Os09t0475400-02;Name=Os09t0475400-02;Locus_id=Os09g0475400;Oryzabase Gene Symbol Synonym(s)=OsbHLH032;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 032;Note=Similar to cDNA clone:J023084K14%2C full insert sequence.;Transcript_evidence=AK101896 (DDBJ%2C Best hit);ORF_evidence=B7EJ81 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J033070P13;Oryzabase=15323;TENOR=Os09t0475400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	18209437	18209666	.	+	.	Parent=Os09t0475400-02
Chr09	irgsp1_rep	five_prime_UTR	18209867	18211706	.	+	.	Parent=Os09t0475400-02
Chr09	irgsp1_rep	five_prime_UTR	18211985	18211986	.	+	.	Parent=Os09t0475400-02
Chr09	irgsp1_rep	CDS	18211987	18212111	.	+	0	Parent=Os09t0475400-02
Chr09	irgsp1_rep	CDS	18212873	18212942	.	+	1	Parent=Os09t0475400-02
Chr09	irgsp1_rep	CDS	18213031	18213126	.	+	0	Parent=Os09t0475400-02
Chr09	irgsp1_rep	CDS	18213234	18213272	.	+	0	Parent=Os09t0475400-02
Chr09	irgsp1_rep	CDS	18213365	18213575	.	+	0	Parent=Os09t0475400-02
Chr09	irgsp1_rep	CDS	18213688	18213829	.	+	2	Parent=Os09t0475400-02
Chr09	irgsp1_rep	CDS	18213926	18214058	.	+	1	Parent=Os09t0475400-02
Chr09	irgsp1_rep	CDS	18214413	18214529	.	+	0	Parent=Os09t0475400-02
Chr09	irgsp1_rep	three_prime_UTR	18214530	18214882	.	+	.	Parent=Os09t0475400-02
Chr09	irgsp1_rep	mRNA	18217457	18221122	.	-	.	ID=Os09t0475500-01;Name=Os09t0475500-01;Locus_id=Os09g0475500;Note=Protein of unknown function DUF246%2C plant family protein.;Transcript_evidence=AK073003 (DDBJ%2C Best hit);ORF_evidence=Q9LMF6 (UniProt);InterPro=GDP-fucose protein O-fucosyltransferase (IPR019378);NIAS_FLcDNA=J023150K23;Expression=AK073003;TENOR=Os09t0475500-01;KEGG=Os09t0475500-01
Chr09	irgsp1_rep	five_prime_UTR	18220816	18221122	.	-	.	Parent=Os09t0475500-01
Chr09	irgsp1_rep	CDS	18220494	18220815	.	-	0	Parent=Os09t0475500-01
Chr09	irgsp1_rep	CDS	18220016	18220083	.	-	2	Parent=Os09t0475500-01
Chr09	irgsp1_rep	CDS	18219821	18219909	.	-	0	Parent=Os09t0475500-01
Chr09	irgsp1_rep	CDS	18219562	18219736	.	-	1	Parent=Os09t0475500-01
Chr09	irgsp1_rep	three_prime_UTR	18219181	18219561	.	-	.	Parent=Os09t0475500-01
Chr09	irgsp1_rep	three_prime_UTR	18218894	18219098	.	-	.	Parent=Os09t0475500-01
Chr09	irgsp1_rep	three_prime_UTR	18218651	18218805	.	-	.	Parent=Os09t0475500-01
Chr09	irgsp1_rep	three_prime_UTR	18217457	18218086	.	-	.	Parent=Os09t0475500-01
Chr09	irgsp1_rep	mRNA	18224933	18230942	.	-	.	ID=Os09t0475700-01;Name=Os09t0475700-01;Locus_id=Os09g0475700;Oryzabase Gene Symbol Synonym(s)=OsPOP19%2C POP19;Oryzabase Gene Name Synonym(s)=Prolyl Oligopeptidase 19%2C PROLYL OLIGOPEPTIDASE 19;Note=Peptidase S9A%2C prolyl oligopeptidase family protein.;Transcript_evidence=AK110073 (DDBJ%2C Best hit);ORF_evidence=NP_001151599.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: protein binding (GO:0005515),Molecular Function: serine-type peptidase activity (GO:0008236);InterPro=Peptidase S9%2C prolyl oligopeptidase%2C catalytic domain (IPR001375),Peptidase S9A%2C prolyl oligopeptidase (IPR002470),Peptidase S9A/B/C%2C oligopeptidase%2C N-terminal beta-propeller (IPR004106),WD40/YVTN repeat-like-containing domain (IPR015943);NIAS_FLcDNA=002-160-F01;Oryzabase=20027;Expression=AK110073;TENOR=Os09t0475700-01;KEGG=Os09t0475700-01
Chr09	irgsp1_rep	five_prime_UTR	18230883	18230942	.	-	.	Parent=Os09t0475700-01
Chr09	irgsp1_rep	CDS	18230515	18230882	.	-	0	Parent=Os09t0475700-01
Chr09	irgsp1_rep	CDS	18229444	18229601	.	-	1	Parent=Os09t0475700-01
Chr09	irgsp1_rep	CDS	18229082	18229304	.	-	2	Parent=Os09t0475700-01
Chr09	irgsp1_rep	CDS	18228846	18228988	.	-	1	Parent=Os09t0475700-01
Chr09	irgsp1_rep	CDS	18228536	18228738	.	-	2	Parent=Os09t0475700-01
Chr09	irgsp1_rep	CDS	18228004	18228138	.	-	0	Parent=Os09t0475700-01
Chr09	irgsp1_rep	CDS	18227577	18227705	.	-	0	Parent=Os09t0475700-01
Chr09	irgsp1_rep	CDS	18226813	18227204	.	-	0	Parent=Os09t0475700-01
Chr09	irgsp1_rep	CDS	18226070	18226280	.	-	1	Parent=Os09t0475700-01
Chr09	irgsp1_rep	CDS	18225680	18225873	.	-	0	Parent=Os09t0475700-01
Chr09	irgsp1_rep	CDS	18225296	18225509	.	-	1	Parent=Os09t0475700-01
Chr09	irgsp1_rep	three_prime_UTR	18224933	18225295	.	-	.	Parent=Os09t0475700-01
Chr09	irgsp1_rep	mRNA	18224585	18226840	.	-	.	ID=Os09t0475700-02;Name=Os09t0475700-02;Locus_id=Os09g0475700;Oryzabase Gene Symbol Synonym(s)=OsPOP19%2C POP19;Oryzabase Gene Name Synonym(s)=Prolyl Oligopeptidase 19%2C PROLYL OLIGOPEPTIDASE 19;Note=Similar to protease 2.;Transcript_evidence=AK101979 (DDBJ%2C Best hit);ORF_evidence=NP_001151599.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: serine-type peptidase activity (GO:0008236);InterPro=Peptidase S9%2C prolyl oligopeptidase%2C catalytic domain (IPR001375),Peptidase S9A%2C prolyl oligopeptidase (IPR002470);NIAS_FLcDNA=J033077F21;Oryzabase=20027;Expression=AK101979;TENOR=Os09t0475700-02;KEGG=Os09t0475700-02
Chr09	irgsp1_rep	five_prime_UTR	18226839	18226840	.	-	.	Parent=Os09t0475700-02
Chr09	irgsp1_rep	CDS	18226813	18226838	.	-	0	Parent=Os09t0475700-02
Chr09	irgsp1_rep	CDS	18226070	18226280	.	-	1	Parent=Os09t0475700-02
Chr09	irgsp1_rep	CDS	18225680	18225873	.	-	0	Parent=Os09t0475700-02
Chr09	irgsp1_rep	CDS	18225296	18225509	.	-	1	Parent=Os09t0475700-02
Chr09	irgsp1_rep	three_prime_UTR	18225221	18225295	.	-	.	Parent=Os09t0475700-02
Chr09	irgsp1_rep	three_prime_UTR	18224585	18225108	.	-	.	Parent=Os09t0475700-02
Chr09	irgsp1_rep	mRNA	18234972	18235872	.	+	.	ID=Os09t0475800-01;Name=Os09t0475800-01;Locus_id=Os09g0475800;RAP-DB Gene Symbol Synonym(s)=DOF25%2C OsDof25;RAP-DB Gene Name Synonym(s)=DNA BINDING WITH ONE FINGER 25;CGSNL Gene Symbol=DOF25;CGSNL Gene Name=DNA BINDING WITH ONE FINGER 25;Oryzabase Gene Symbol Synonym(s)=OsDof25%2C Dof25%2C OsDof-25;Oryzabase Gene Name Synonym(s)=Dof zinc factor 25%2C Dof transcription factor 25;Note=Transcriptional activator%2C Regulation of the C4 photosynthesis gene%2C OsC4PPDK;Transcript_evidence=KC996733;ORF_evidence=T2CYQ8,Q651Z2;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Zinc finger%2C Dof-type (IPR003851);Manual Curation=September 9%2C 2015;Literature_PMID=26337938;Oryzabase=8814;TENOR=Os09t0475800-00
Chr09	irgsp1_rep	CDS	18234972	18235664	.	+	0	Parent=Os09t0475800-01
Chr09	irgsp1_rep	three_prime_UTR	18235665	18235872	.	+	.	Parent=Os09t0475800-01
Chr09	irgsp1_rep	mRNA	18237700	18240309	.	+	.	ID=Os09t0476000-01;Name=Os09t0476000-01;Locus_id=Os09g0476000;Note=Prefoldin domain containing protein.;Transcript_evidence=AK073131 (DDBJ%2C Best hit);ORF_evidence=NP_001149293.1 (RefSeq);NIAS_FLcDNA=J033000J24;Expression=AK073131;TENOR=Os09t0476000-01;KEGG=Os09t0476000-01
Chr09	irgsp1_rep	five_prime_UTR	18237700	18237853	.	+	.	Parent=Os09t0476000-01
Chr09	irgsp1_rep	CDS	18237854	18237945	.	+	0	Parent=Os09t0476000-01
Chr09	irgsp1_rep	CDS	18238039	18238087	.	+	1	Parent=Os09t0476000-01
Chr09	irgsp1_rep	CDS	18238370	18238654	.	+	0	Parent=Os09t0476000-01
Chr09	irgsp1_rep	CDS	18239565	18239786	.	+	0	Parent=Os09t0476000-01
Chr09	irgsp1_rep	CDS	18239923	18240072	.	+	0	Parent=Os09t0476000-01
Chr09	irgsp1_rep	three_prime_UTR	18240073	18240309	.	+	.	Parent=Os09t0476000-01
Chr09	irgsp1_rep	mRNA	18242949	18245317	.	-	.	ID=Os09t0476100-01;Name=Os09t0476100-01;Locus_id=Os09g0476100;Note=RNA recognition motif%2C glycine rich protein domain containing protein.;Transcript_evidence=AK099938 (DDBJ%2C Best hit);ORF_evidence=A2Z2C1 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013120H23;Expression=AK099938;TENOR=Os09t0476100-01;KEGG=Os09t0476100-01
Chr09	irgsp1_rep	five_prime_UTR	18245251	18245317	.	-	.	Parent=Os09t0476100-01
Chr09	irgsp1_rep	CDS	18243436	18245250	.	-	0	Parent=Os09t0476100-01
Chr09	irgsp1_rep	three_prime_UTR	18242949	18243435	.	-	.	Parent=Os09t0476100-01
Chr09	irgsp1_rep	mRNA	18240927	18243373	.	-	.	ID=Os09t0476100-02;Name=Os09t0476100-02;Locus_id=Os09g0476100;Note=Non-protein coding transcript.;Transcript_evidence=AK059276 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-025-C05;TENOR=Os09t0476100-02
Chr09	irgsp1_rep	exon	18243261	18243373	.	-	.	Parent=Os09t0476100-02
Chr09	irgsp1_rep	exon	18240927	18241346	.	-	.	Parent=Os09t0476100-02
Chr09	irgsp1_rep	mRNA	18247317	18247709	.	-	.	ID=Os09t0476401-00;Name=Os09t0476401-00;Locus_id=Os09g0476401;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os09t0476401-00
Chr09	irgsp1_rep	CDS	18247317	18247709	.	-	0	Parent=Os09t0476401-00
Chr09	irgsp1_rep	mRNA	18255230	18256863	.	-	.	ID=Os09t0476700-01;Name=Os09t0476700-01;Locus_id=Os09g0476700;Note=Non-protein coding transcript.;Transcript_evidence=AK063288 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-113-D12;TENOR=Os09t0476700-01
Chr09	irgsp1_rep	exon	18255230	18256863	.	-	.	Parent=Os09t0476700-01
Chr09	irgsp1_rep	mRNA	18257644	18258698	.	+	.	ID=Os09t0476800-01;Name=Os09t0476800-01;Locus_id=Os09g0476800;CGSNL Gene Symbol=FLA10;CGSNL Gene Name=FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 10;Oryzabase Gene Symbol Synonym(s)=OsFLA10;Oryzabase Gene Name Synonym(s)=fasciclin-like AGP 10%2C fasciclin-like arabinogalactan protein 10;Note=FAS1 domain domain containing protein.;Transcript_evidence=AK109663 (DDBJ%2C Best hit);ORF_evidence=Q06IA2 (UniProt);InterPro=FAS1 domain (IPR000782);NIAS_FLcDNA=002-144-C01;Oryzabase=11345;Expression=AK109663;TENOR=Os09t0476800-01;KEGG=Os09t0476800-01
Chr09	irgsp1_rep	five_prime_UTR	18257644	18257729	.	+	.	Parent=Os09t0476800-01
Chr09	irgsp1_rep	CDS	18257730	18258551	.	+	0	Parent=Os09t0476800-01
Chr09	irgsp1_rep	three_prime_UTR	18258552	18258698	.	+	.	Parent=Os09t0476800-01
Chr09	irgsp1_rep	mRNA	18269127	18269791	.	+	.	ID=Os09t0477100-01;Name=Os09t0477100-01;Locus_id=Os09g0477100;Note=Hypothetical protein.;Transcript_evidence=AK121447 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J023141K23;Expression=AK121447;TENOR=Os09t0477100-01;KEGG=Os09t0477100-01
Chr09	irgsp1_rep	five_prime_UTR	18269127	18269252	.	+	.	Parent=Os09t0477100-01
Chr09	irgsp1_rep	CDS	18269253	18269498	.	+	0	Parent=Os09t0477100-01
Chr09	irgsp1_rep	three_prime_UTR	18269499	18269791	.	+	.	Parent=Os09t0477100-01
Chr09	irgsp1_rep	mRNA	18278585	18280223	.	-	.	ID=Os09t0477550-00;Name=Os09t0477550-00;Locus_id=Os09g0477550;Note=Similar to Mov34/MPN/PAD-1 family protein.;Transcript_evidence=AK119834 (DDBJ%2C Secondary hit);ORF_evidence=Q53RR0 (UniProt);TENOR=Os09t0477550-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	18279420	18280223	.	-	.	Parent=Os09t0477550-00
Chr09	irgsp1_rep	CDS	18278829	18279419	.	-	0	Parent=Os09t0477550-00
Chr09	irgsp1_rep	three_prime_UTR	18278585	18278828	.	-	.	Parent=Os09t0477550-00
Chr09	irgsp1_rep	mRNA	18281423	18286861	.	+	.	ID=Os09t0477700-01;Name=Os09t0477700-01;Locus_id=Os09g0477700;Note=Conserved hypothetical protein.;Transcript_evidence=AK121644 (DDBJ%2C Best hit);ORF_evidence=B9G460 (UniProt);NIAS_FLcDNA=J033057B05;TENOR=Os09t0477700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	18281423	18281631	.	+	.	Parent=Os09t0477700-01
Chr09	irgsp1_rep	CDS	18281632	18281794	.	+	0	Parent=Os09t0477700-01
Chr09	irgsp1_rep	CDS	18282299	18284206	.	+	2	Parent=Os09t0477700-01
Chr09	irgsp1_rep	CDS	18284300	18284946	.	+	2	Parent=Os09t0477700-01
Chr09	irgsp1_rep	CDS	18285361	18286600	.	+	0	Parent=Os09t0477700-01
Chr09	irgsp1_rep	CDS	18286736	18286861	.	+	2	Parent=Os09t0477700-01
Chr09	irgsp1_rep	mRNA	18293017	18316030	.	+	.	ID=Os09t0477900-01;Name=Os09t0477900-01;Locus_id=Os09g0477900;Note=NusB/RsmB/TIM44 domain containing protein.;Transcript_evidence=AK068464 (DDBJ%2C Best hit);ORF_evidence=NP_187924.2 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: rRNA processing (GO:0006364),Molecular Function: RNA binding (GO:0003723),Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: rRNA methyltransferase activity (GO:0008649);InterPro=Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (IPR001678),rRNA small subunit methyltransferase B (IPR004573),NusB/RsmB/TIM44 (IPR006027),Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p%2C conserved site (IPR018314),RNA (C5-cytosine) methyltransferase (IPR023267),RNA (C5-cytosine) methyltransferase%2C putative Rsm-related%2C plant (IPR023268);NIAS_FLcDNA=J013155D10;Expression=AK068464;TENOR=Os09t0477900-01;KEGG=Os09t0477900-01 (EC:2.1.1.-)
Chr09	irgsp1_rep	five_prime_UTR	18293017	18293084	.	+	.	Parent=Os09t0477900-01
Chr09	irgsp1_rep	CDS	18293085	18293196	.	+	0	Parent=Os09t0477900-01
Chr09	irgsp1_rep	CDS	18293310	18293360	.	+	2	Parent=Os09t0477900-01
Chr09	irgsp1_rep	CDS	18293495	18293548	.	+	2	Parent=Os09t0477900-01
Chr09	irgsp1_rep	CDS	18294378	18294428	.	+	2	Parent=Os09t0477900-01
Chr09	irgsp1_rep	CDS	18294496	18294546	.	+	2	Parent=Os09t0477900-01
Chr09	irgsp1_rep	CDS	18294707	18294861	.	+	2	Parent=Os09t0477900-01
Chr09	irgsp1_rep	CDS	18295201	18295314	.	+	0	Parent=Os09t0477900-01
Chr09	irgsp1_rep	CDS	18295524	18295589	.	+	0	Parent=Os09t0477900-01
Chr09	irgsp1_rep	CDS	18296129	18296212	.	+	0	Parent=Os09t0477900-01
Chr09	irgsp1_rep	CDS	18296291	18296377	.	+	0	Parent=Os09t0477900-01
Chr09	irgsp1_rep	CDS	18296626	18296717	.	+	0	Parent=Os09t0477900-01
Chr09	irgsp1_rep	CDS	18296814	18296874	.	+	1	Parent=Os09t0477900-01
Chr09	irgsp1_rep	CDS	18297126	18297182	.	+	0	Parent=Os09t0477900-01
Chr09	irgsp1_rep	CDS	18297807	18297865	.	+	0	Parent=Os09t0477900-01
Chr09	irgsp1_rep	CDS	18298126	18298235	.	+	1	Parent=Os09t0477900-01
Chr09	irgsp1_rep	CDS	18298854	18298972	.	+	2	Parent=Os09t0477900-01
Chr09	irgsp1_rep	CDS	18299169	18299240	.	+	0	Parent=Os09t0477900-01
Chr09	irgsp1_rep	CDS	18299350	18299435	.	+	0	Parent=Os09t0477900-01
Chr09	irgsp1_rep	CDS	18299517	18299613	.	+	1	Parent=Os09t0477900-01
Chr09	irgsp1_rep	CDS	18300139	18300273	.	+	0	Parent=Os09t0477900-01
Chr09	irgsp1_rep	three_prime_UTR	18300274	18300288	.	+	.	Parent=Os09t0477900-01
Chr09	irgsp1_rep	three_prime_UTR	18300511	18300613	.	+	.	Parent=Os09t0477900-01
Chr09	irgsp1_rep	three_prime_UTR	18303728	18303792	.	+	.	Parent=Os09t0477900-01
Chr09	irgsp1_rep	three_prime_UTR	18303897	18304047	.	+	.	Parent=Os09t0477900-01
Chr09	irgsp1_rep	three_prime_UTR	18310858	18310908	.	+	.	Parent=Os09t0477900-01
Chr09	irgsp1_rep	three_prime_UTR	18310986	18311056	.	+	.	Parent=Os09t0477900-01
Chr09	irgsp1_rep	three_prime_UTR	18314993	18316030	.	+	.	Parent=Os09t0477900-01
Chr09	irgsp1_rep	mRNA	18301105	18302885	.	-	.	ID=Os09t0478000-00;Name=Os09t0478000-00;Locus_id=Os09g0478000;Note=Hypothetical conserved gene.;Transcript_evidence=BT055345 (DDBJ);ORF_evidence=NP_001063469.1 (RefSeq);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150);TENOR=Os09t0478000-00;KEGG=Os09t0478000-00
Chr09	irgsp1_rep	five_prime_UTR	18302731	18302885	.	-	.	Parent=Os09t0478000-00
Chr09	irgsp1_rep	five_prime_UTR	18302038	18302271	.	-	.	Parent=Os09t0478000-00
Chr09	irgsp1_rep	CDS	18301741	18302037	.	-	0	Parent=Os09t0478000-00
Chr09	irgsp1_rep	three_prime_UTR	18301718	18301740	.	-	.	Parent=Os09t0478000-00
Chr09	irgsp1_rep	three_prime_UTR	18301105	18301639	.	-	.	Parent=Os09t0478000-00
Chr09	irgsp1_rep	mRNA	18307930	18314231	.	-	.	ID=Os09t0478100-01;Name=Os09t0478100-01;Locus_id=Os09g0478100;CGSNL Gene Symbol=CSLE1;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE E1;Oryzabase Gene Symbol Synonym(s)=OsCslE1%2C OsCSLE1;Note=Cellulose synthase family protein.;Transcript_evidence=AK102766 (DDBJ%2C Best hit);ORF_evidence=Q651X7 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150);NIAS_FLcDNA=J033107E04;Oryzabase=9067;Expression=AK102766;TENOR=Os09t0478100-01;KEGG=Os09t0478100-01
Chr09	irgsp1_rep	five_prime_UTR	18314074	18314231	.	-	.	Parent=Os09t0478100-01
Chr09	irgsp1_rep	CDS	18313784	18314073	.	-	0	Parent=Os09t0478100-01
Chr09	irgsp1_rep	CDS	18310755	18311073	.	-	1	Parent=Os09t0478100-01
Chr09	irgsp1_rep	CDS	18310455	18310595	.	-	0	Parent=Os09t0478100-01
Chr09	irgsp1_rep	CDS	18310205	18310336	.	-	0	Parent=Os09t0478100-01
Chr09	irgsp1_rep	CDS	18309539	18309751	.	-	0	Parent=Os09t0478100-01
Chr09	irgsp1_rep	CDS	18308860	18309432	.	-	0	Parent=Os09t0478100-01
Chr09	irgsp1_rep	CDS	18307976	18308521	.	-	0	Parent=Os09t0478100-01
Chr09	irgsp1_rep	three_prime_UTR	18307930	18307975	.	-	.	Parent=Os09t0478100-01
Chr09	irgsp1_rep	mRNA	18307890	18312736	.	-	.	ID=Os09t0478100-02;Name=Os09t0478100-02;Locus_id=Os09g0478100;CGSNL Gene Symbol=CSLE1;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE E1;Oryzabase Gene Symbol Synonym(s)=OsCslE1%2C OsCSLE1;Note=Similar to Cellulose synthase-like protein E1.;Transcript_evidence=AK103810 (DDBJ%2C Best hit);ORF_evidence=Q651X7 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150);NIAS_FLcDNA=J033147A19;Oryzabase=9067;Expression=AK103810;TENOR=Os09t0478100-02;KEGG=Os09t0478100-02
Chr09	irgsp1_rep	five_prime_UTR	18312621	18312736	.	-	.	Parent=Os09t0478100-02
Chr09	irgsp1_rep	five_prime_UTR	18311073	18311073	.	-	.	Parent=Os09t0478100-02
Chr09	irgsp1_rep	CDS	18310755	18311072	.	-	0	Parent=Os09t0478100-02
Chr09	irgsp1_rep	CDS	18310455	18310595	.	-	0	Parent=Os09t0478100-02
Chr09	irgsp1_rep	CDS	18310205	18310336	.	-	0	Parent=Os09t0478100-02
Chr09	irgsp1_rep	CDS	18309539	18309751	.	-	0	Parent=Os09t0478100-02
Chr09	irgsp1_rep	CDS	18308860	18309432	.	-	0	Parent=Os09t0478100-02
Chr09	irgsp1_rep	CDS	18307976	18308521	.	-	0	Parent=Os09t0478100-02
Chr09	irgsp1_rep	three_prime_UTR	18307890	18307975	.	-	.	Parent=Os09t0478100-02
Chr09	irgsp1_rep	mRNA	18307893	18309308	.	-	.	ID=Os09t0478100-03;Name=Os09t0478100-03;Locus_id=Os09g0478100;CGSNL Gene Symbol=CSLE1;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE E1;Oryzabase Gene Symbol Synonym(s)=OsCslE1%2C OsCSLE1;Note=Similar to Isoform 2 of Cellulose synthase-like protein E1.;Transcript_evidence=AK061639 (DDBJ%2C Best hit);ORF_evidence=B7EV74 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150);NIAS_FLcDNA=001-036-B01;Oryzabase=9067;Expression=AK061639;TENOR=Os09t0478100-03;KEGG=Os09t0478100-03
Chr09	irgsp1_rep	five_prime_UTR	18309307	18309308	.	-	.	Parent=Os09t0478100-03
Chr09	irgsp1_rep	CDS	18308860	18309306	.	-	0	Parent=Os09t0478100-03
Chr09	irgsp1_rep	CDS	18307976	18308521	.	-	0	Parent=Os09t0478100-03
Chr09	irgsp1_rep	three_prime_UTR	18307893	18307975	.	-	.	Parent=Os09t0478100-03
Chr09	irgsp1_rep	mRNA	18316004	18322383	.	-	.	ID=Os09t0478300-01;Name=Os09t0478300-01;Locus_id=Os09g0478300;CGSNL Gene Symbol=CSLE6;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE E6;Oryzabase Gene Symbol Synonym(s)=OsCslE6%2C OsCSLE6;Note=Similar to Cellulose synthase-like protein E6.;Transcript_evidence=AK242585 (DDBJ%2C Best hit);ORF_evidence=Q651X6 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150);NIAS_FLcDNA=J090010M20;Oryzabase=18108;TENOR=Os09t0478300-01;KEGG=Os09t0478300-01
Chr09	irgsp1_rep	five_prime_UTR	18321180	18322383	.	-	.	Parent=Os09t0478300-01
Chr09	irgsp1_rep	CDS	18320905	18321179	.	-	0	Parent=Os09t0478300-01
Chr09	irgsp1_rep	CDS	18318550	18318868	.	-	1	Parent=Os09t0478300-01
Chr09	irgsp1_rep	CDS	18318242	18318382	.	-	0	Parent=Os09t0478300-01
Chr09	irgsp1_rep	CDS	18318030	18318161	.	-	0	Parent=Os09t0478300-01
Chr09	irgsp1_rep	CDS	18317387	18317599	.	-	0	Parent=Os09t0478300-01
Chr09	irgsp1_rep	CDS	18316705	18317277	.	-	0	Parent=Os09t0478300-01
Chr09	irgsp1_rep	CDS	18316386	18316604	.	-	0	Parent=Os09t0478300-01
Chr09	irgsp1_rep	CDS	18316259	18316270	.	-	0	Parent=Os09t0478300-01
Chr09	irgsp1_rep	three_prime_UTR	18316004	18316258	.	-	.	Parent=Os09t0478300-01
Chr09	irgsp1_rep	mRNA	18331307	18333054	.	-	.	ID=Os09t0478400-01;Name=Os09t0478400-01;Locus_id=Os09g0478400;Note=Conserved hypothetical protein.;Transcript_evidence=AK107794 (DDBJ%2C Best hit);ORF_evidence=B9G464 (UniProt);NIAS_FLcDNA=002-133-D08;Expression=AK107794;TENOR=Os09t0478400-01;KEGG=Os09t0478400-01
Chr09	irgsp1_rep	five_prime_UTR	18332993	18333054	.	-	.	Parent=Os09t0478400-01
Chr09	irgsp1_rep	CDS	18332720	18332992	.	-	0	Parent=Os09t0478400-01
Chr09	irgsp1_rep	CDS	18331865	18332053	.	-	0	Parent=Os09t0478400-01
Chr09	irgsp1_rep	CDS	18331448	18331525	.	-	0	Parent=Os09t0478400-01
Chr09	irgsp1_rep	three_prime_UTR	18331307	18331447	.	-	.	Parent=Os09t0478400-01
Chr09	irgsp1_rep	mRNA	18339634	18343516	.	+	.	ID=Os09t0478500-01;Name=Os09t0478500-01;Locus_id=Os09g0478500;Oryzabase Gene Name Synonym(s)=Protein kinase C homolog;Note=Similar to Protein kinase KIPK.;Transcript_evidence=AK100536 (DDBJ%2C Best hit);ORF_evidence=NP_199586.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023101N17;Oryzabase=17650;Expression=AK100536;TENOR=Os09t0478500-01;KEGG=Os09t0478500-01
Chr09	irgsp1_rep	five_prime_UTR	18339634	18339967	.	+	.	Parent=Os09t0478500-01
Chr09	irgsp1_rep	five_prime_UTR	18340948	18341058	.	+	.	Parent=Os09t0478500-01
Chr09	irgsp1_rep	CDS	18341059	18341930	.	+	0	Parent=Os09t0478500-01
Chr09	irgsp1_rep	CDS	18342469	18343348	.	+	1	Parent=Os09t0478500-01
Chr09	irgsp1_rep	three_prime_UTR	18343349	18343516	.	+	.	Parent=Os09t0478500-01
Chr09	irgsp1_rep	mRNA	18351718	18352326	.	-	.	ID=Os09t0478600-01;Name=Os09t0478600-01;Locus_id=Os09g0478600;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK109529 (DDBJ%2C Best hit);ORF_evidence=NP_001151741.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=002-116-D09;Expression=AK109529;TENOR=Os09t0478600-01;KEGG=Os09t0478600-01
Chr09	irgsp1_rep	CDS	18351994	18352326	.	-	0	Parent=Os09t0478600-01
Chr09	irgsp1_rep	three_prime_UTR	18351718	18351993	.	-	.	Parent=Os09t0478600-01
Chr09	irgsp1_rep	mRNA	18351882	18352492	.	+	.	ID=Os09t0478733-00;Name=Os09t0478733-00;Locus_id=Os09g0478733;Note=Non-protein coding transcript.;Transcript_evidence=BT019287 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0478733-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	exon	18351882	18352492	.	+	.	Parent=Os09t0478733-00
Chr09	irgsp1_rep	mRNA	18359613	18360261	.	-	.	ID=Os09t0478900-01;Name=Os09t0478900-01;Locus_id=Os09g0478900;Note=Conserved hypothetical protein.;Transcript_evidence=AK107719 (DDBJ%2C Best hit);ORF_evidence=Q84YJ4 (UniProt);NIAS_FLcDNA=002-132-E07;TENOR=Os09t0478900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	18359915	18360261	.	-	.	Parent=Os09t0478900-01
Chr09	irgsp1_rep	CDS	18359726	18359914	.	-	0	Parent=Os09t0478900-01
Chr09	irgsp1_rep	three_prime_UTR	18359613	18359725	.	-	.	Parent=Os09t0478900-01
Chr09	irgsp1_rep	mRNA	18360678	18364005	.	+	.	ID=Os09t0479000-01;Name=Os09t0479000-01;Locus_id=Os09g0479000;Note=Similar to FIMBRIATA-like protein.;Transcript_evidence=AK241772 (DDBJ%2C Best hit);ORF_evidence=Q2L3U4 (UniProt);InterPro=F-box associated domain%2C type 3 (IPR013187),F-box associated interaction domain (IPR017451);NIAS_FLcDNA=J065205L04;TENOR=Os09t0479000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	18360678	18360776	.	+	.	Parent=Os09t0479000-01
Chr09	irgsp1_rep	five_prime_UTR	18361289	18361484	.	+	.	Parent=Os09t0479000-01
Chr09	irgsp1_rep	CDS	18361485	18362534	.	+	0	Parent=Os09t0479000-01
Chr09	irgsp1_rep	three_prime_UTR	18362535	18362620	.	+	.	Parent=Os09t0479000-01
Chr09	irgsp1_rep	three_prime_UTR	18362705	18364005	.	+	.	Parent=Os09t0479000-01
Chr09	irgsp1_rep	mRNA	18364592	18368193	.	+	.	ID=Os09t0479100-01;Name=Os09t0479100-01;Locus_id=Os09g0479100;Oryzabase Gene Symbol Synonym(s)=OsFbox492%2C Os_F0175;Oryzabase Gene Name Synonym(s)=F-box protein 492;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK063439 (DDBJ%2C Best hit);ORF_evidence=B8BCV8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated domain%2C type 1 (IPR006527),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=001-115-E10;Oryzabase=17262;TENOR=Os09t0479100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	18364592	18364675	.	+	.	Parent=Os09t0479100-01
Chr09	irgsp1_rep	five_prime_UTR	18365317	18365336	.	+	.	Parent=Os09t0479100-01
Chr09	irgsp1_rep	CDS	18365337	18366608	.	+	0	Parent=Os09t0479100-01
Chr09	irgsp1_rep	CDS	18366701	18366760	.	+	0	Parent=Os09t0479100-01
Chr09	irgsp1_rep	CDS	18366883	18366975	.	+	0	Parent=Os09t0479100-01
Chr09	irgsp1_rep	CDS	18367326	18367382	.	+	0	Parent=Os09t0479100-01
Chr09	irgsp1_rep	CDS	18367972	18368010	.	+	0	Parent=Os09t0479100-01
Chr09	irgsp1_rep	three_prime_UTR	18368011	18368193	.	+	.	Parent=Os09t0479100-01
Chr09	irgsp1_rep	mRNA	18365260	18366617	.	-	.	ID=Os09t0479133-00;Name=Os09t0479133-00;Locus_id=Os09g0479133;Note=Non-protein coding transcript.;Transcript_evidence=tplb0058c05 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os09t0479133-00
Chr09	irgsp1_rep	exon	18365260	18366617	.	-	.	Parent=Os09t0479133-00
Chr09	irgsp1_rep	mRNA	18375696	18376579	.	+	.	ID=Os09t0479200-01;Name=Os09t0479200-01;Locus_id=Os09g0479200;CGSNL Gene Symbol=RLCK275;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 275;Oryzabase Gene Symbol Synonym(s)=OsRLCK275;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 275;Note=Similar to Receptor protein kinase-like protein.;Transcript_evidence=AK110348 (DDBJ%2C Best hit);ORF_evidence=Q652D9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=002-164-G12;Oryzabase=18962;Expression=AK110348;TENOR=Os09t0479200-01;KEGG=Os09t0479200-01
Chr09	irgsp1_rep	five_prime_UTR	18375696	18375760	.	+	.	Parent=Os09t0479200-01
Chr09	irgsp1_rep	CDS	18375761	18376579	.	+	0	Parent=Os09t0479200-01
Chr09	irgsp1_rep	mRNA	18381040	18384342	.	+	.	ID=Os09t0479300-01;Name=Os09t0479300-01;Locus_id=Os09g0479300;Note=Phenylalanyl-tRNA synthetase%2C class IIc family protein.;Transcript_evidence=AK102408 (DDBJ%2C Best hit);ORF_evidence=A2Z2E0 (UniProt);InterPro=Domain of unknown function DUF2431 (IPR019446);NIAS_FLcDNA=J033092M06;Expression=AK102408;TENOR=Os09t0479300-01;KEGG=Os09t0479300-01
Chr09	irgsp1_rep	five_prime_UTR	18381040	18381079	.	+	.	Parent=Os09t0479300-01
Chr09	irgsp1_rep	CDS	18381080	18381431	.	+	0	Parent=Os09t0479300-01
Chr09	irgsp1_rep	CDS	18382521	18382719	.	+	2	Parent=Os09t0479300-01
Chr09	irgsp1_rep	CDS	18383248	18384109	.	+	1	Parent=Os09t0479300-01
Chr09	irgsp1_rep	three_prime_UTR	18384110	18384342	.	+	.	Parent=Os09t0479300-01
Chr09	irgsp1_rep	mRNA	18387472	18391684	.	+	.	ID=Os09t0479400-01;Name=Os09t0479400-01;Locus_id=Os09g0479400;Note=Phenylalanyl-tRNA synthetase%2C class IIc family protein.;Transcript_evidence=AK109596 (DDBJ%2C Best hit);ORF_evidence=A2Z2E1 (UniProt);InterPro=Domain of unknown function DUF2431 (IPR019446);NIAS_FLcDNA=002-137-D05;Expression=AK109596;TENOR=Os09t0479400-01;KEGG=Os09t0479400-01
Chr09	irgsp1_rep	five_prime_UTR	18387472	18387565	.	+	.	Parent=Os09t0479400-01
Chr09	irgsp1_rep	CDS	18387566	18388256	.	+	0	Parent=Os09t0479400-01
Chr09	irgsp1_rep	CDS	18389695	18389893	.	+	2	Parent=Os09t0479400-01
Chr09	irgsp1_rep	CDS	18390565	18391402	.	+	1	Parent=Os09t0479400-01
Chr09	irgsp1_rep	three_prime_UTR	18391403	18391684	.	+	.	Parent=Os09t0479400-01
Chr09	irgsp1_rep	mRNA	18391869	18397839	.	-	.	ID=Os09t0479500-01;Name=Os09t0479500-01;Locus_id=Os09g0479500;Note=NB-ARC domain containing protein.;Transcript_evidence=AK121624 (DDBJ%2C Best hit);ORF_evidence=Q5BMB3 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J033046D04;Expression=AK121624;TENOR=Os09t0479500-01;KEGG=Os09t0479500-01
Chr09	irgsp1_rep	five_prime_UTR	18397512	18397839	.	-	.	Parent=Os09t0479500-01
Chr09	irgsp1_rep	five_prime_UTR	18396410	18396508	.	-	.	Parent=Os09t0479500-01
Chr09	irgsp1_rep	five_prime_UTR	18396082	18396207	.	-	.	Parent=Os09t0479500-01
Chr09	irgsp1_rep	five_prime_UTR	18395864	18395960	.	-	.	Parent=Os09t0479500-01
Chr09	irgsp1_rep	CDS	18393091	18395863	.	-	0	Parent=Os09t0479500-01
Chr09	irgsp1_rep	CDS	18392619	18392728	.	-	2	Parent=Os09t0479500-01
Chr09	irgsp1_rep	three_prime_UTR	18392449	18392618	.	-	.	Parent=Os09t0479500-01
Chr09	irgsp1_rep	three_prime_UTR	18391869	18392299	.	-	.	Parent=Os09t0479500-01
Chr09	irgsp1_rep	mRNA	18402210	18404264	.	-	.	ID=Os09t0479600-01;Name=Os09t0479600-01;Locus_id=Os09g0479600;Note=Similar to RXO1 disease resistance protein.;Transcript_evidence=AK064218 (DDBJ%2C Best hit);ORF_evidence=Q5BMB3 (UniProt);NIAS_FLcDNA=002-104-F09;Expression=AK064218;TENOR=Os09t0479600-01;KEGG=Os09t0479600-01
Chr09	irgsp1_rep	CDS	18403090	18404264	.	-	0	Parent=Os09t0479600-01
Chr09	irgsp1_rep	CDS	18402696	18402786	.	-	1	Parent=Os09t0479600-01
Chr09	irgsp1_rep	three_prime_UTR	18402210	18402695	.	-	.	Parent=Os09t0479600-01
Chr09	irgsp1_rep	mRNA	18411578	18413163	.	+	.	ID=Os09t0479800-01;Name=Os09t0479800-01;Locus_id=Os09g0479800;Oryzabase Gene Symbol Synonym(s)=OsEnS-130%2C OsPFK09%2C PFK09%2C PFK9;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 130%2C phosphofructokinase 9;Note=Similar to Pyrophosphate-dependent phosphofructo-1-kinase-like protein.;Transcript_evidence=AK109585 (DDBJ%2C Best hit);ORF_evidence=Q01IL1 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Cellular Component: 6-phosphofructokinase complex (GO:0005945),Molecular Function: 6-phosphofructokinase activity (GO:0003872),Molecular Function: ATP binding (GO:0005524);InterPro=Phosphofructokinase domain (IPR000023),Pyrophosphate-dependent phosphofructokinase TP0108 (IPR012004),Phosphofructokinase (IPR022953);NIAS_FLcDNA=002-137-B02;Oryzabase=18421;Expression=AK109585;TENOR=Os09t0479800-01;KEGG=Os09t0479800-01
Chr09	irgsp1_rep	five_prime_UTR	18411578	18411614	.	+	.	Parent=Os09t0479800-01
Chr09	irgsp1_rep	CDS	18411615	18413012	.	+	0	Parent=Os09t0479800-01
Chr09	irgsp1_rep	three_prime_UTR	18413013	18413163	.	+	.	Parent=Os09t0479800-01
Chr09	irgsp1_rep	mRNA	18414174	18422623	.	+	.	ID=Os09t0479900-01;Name=Os09t0479900-01;Locus_id=Os09g0479900;Oryzabase Gene Symbol Synonym(s)=OsSub58%2C SUB58;Oryzabase Gene Name Synonym(s)=Subtilisin 58%2C SUBTILISIN 58;Note=Similar to Subtilisin-like protease.;Transcript_evidence=AK242776 (DDBJ%2C Best hit);ORF_evidence=Q2L3T0 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);NIAS_FLcDNA=J090054H22;Oryzabase=20142;TENOR=Os09t0479900-01;KEGG=Os09t0479900-01
Chr09	irgsp1_rep	five_prime_UTR	18414174	18414292	.	+	.	Parent=Os09t0479900-01
Chr09	irgsp1_rep	CDS	18414293	18414395	.	+	0	Parent=Os09t0479900-01
Chr09	irgsp1_rep	CDS	18414478	18414595	.	+	2	Parent=Os09t0479900-01
Chr09	irgsp1_rep	CDS	18414687	18414784	.	+	1	Parent=Os09t0479900-01
Chr09	irgsp1_rep	CDS	18414885	18415049	.	+	2	Parent=Os09t0479900-01
Chr09	irgsp1_rep	CDS	18416731	18416845	.	+	2	Parent=Os09t0479900-01
Chr09	irgsp1_rep	CDS	18419882	18420413	.	+	1	Parent=Os09t0479900-01
Chr09	irgsp1_rep	CDS	18420487	18420584	.	+	0	Parent=Os09t0479900-01
Chr09	irgsp1_rep	CDS	18420677	18420922	.	+	1	Parent=Os09t0479900-01
Chr09	irgsp1_rep	CDS	18421266	18421380	.	+	1	Parent=Os09t0479900-01
Chr09	irgsp1_rep	CDS	18421495	18421708	.	+	0	Parent=Os09t0479900-01
Chr09	irgsp1_rep	CDS	18421862	18422475	.	+	2	Parent=Os09t0479900-01
Chr09	irgsp1_rep	three_prime_UTR	18422476	18422623	.	+	.	Parent=Os09t0479900-01
Chr09	irgsp1_rep	mRNA	18424060	18424508	.	-	.	ID=Os09t0480100-01;Name=Os09t0480100-01;Locus_id=Os09g0480100;Note=Conserved hypothetical protein.;Transcript_evidence=AK062866 (DDBJ%2C Best hit);ORF_evidence=B8BCT2 (UniProt);NIAS_FLcDNA=001-108-B10;Expression=AK062866;TENOR=Os09t0480100-01;KEGG=Os09t0480100-01
Chr09	irgsp1_rep	five_prime_UTR	18424416	18424508	.	-	.	Parent=Os09t0480100-01
Chr09	irgsp1_rep	CDS	18424218	18424415	.	-	0	Parent=Os09t0480100-01
Chr09	irgsp1_rep	three_prime_UTR	18424060	18424217	.	-	.	Parent=Os09t0480100-01
Chr09	irgsp1_rep	mRNA	18432162	18435022	.	+	.	ID=Os09t0480300-01;Name=Os09t0480300-01;Locus_id=Os09g0480300;Note=Similar to cDNA clone:J033054O21%2C full insert sequence.;Transcript_evidence=AK071959 (DDBJ%2C Best hit);ORF_evidence=B7ES14 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527);NIAS_FLcDNA=J013087K05;TENOR=Os09t0480300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	18432162	18432448	.	+	.	Parent=Os09t0480300-01
Chr09	irgsp1_rep	five_prime_UTR	18432700	18432882	.	+	.	Parent=Os09t0480300-01
Chr09	irgsp1_rep	five_prime_UTR	18433690	18433753	.	+	.	Parent=Os09t0480300-01
Chr09	irgsp1_rep	CDS	18433754	18434383	.	+	0	Parent=Os09t0480300-01
Chr09	irgsp1_rep	CDS	18434469	18434477	.	+	0	Parent=Os09t0480300-01
Chr09	irgsp1_rep	three_prime_UTR	18434478	18434527	.	+	.	Parent=Os09t0480300-01
Chr09	irgsp1_rep	three_prime_UTR	18434608	18435022	.	+	.	Parent=Os09t0480300-01
Chr09	irgsp1_rep	mRNA	18432162	18435022	.	+	.	ID=Os09t0480300-02;Name=Os09t0480300-02;Locus_id=Os09g0480300;Note=Zinc finger%2C CCHC-type domain containing protein.;Transcript_evidence=AK101632 (DDBJ%2C Best hit);ORF_evidence=Q2QP77 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527);NIAS_FLcDNA=J033054O21;TENOR=Os09t0480300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	18432162	18432448	.	+	.	Parent=Os09t0480300-02
Chr09	irgsp1_rep	five_prime_UTR	18432700	18432882	.	+	.	Parent=Os09t0480300-02
Chr09	irgsp1_rep	five_prime_UTR	18433690	18433753	.	+	.	Parent=Os09t0480300-02
Chr09	irgsp1_rep	CDS	18433754	18434389	.	+	0	Parent=Os09t0480300-02
Chr09	irgsp1_rep	three_prime_UTR	18434390	18435022	.	+	.	Parent=Os09t0480300-02
Chr09	irgsp1_rep	mRNA	18441091	18445139	.	+	.	ID=Os09t0480400-01;Name=Os09t0480400-01;Locus_id=Os09g0480400;CGSNL Gene Symbol=GAUT8;CGSNL Gene Name=GALACTURONOSYLTRANSFERASE 8;Oryzabase Gene Symbol Synonym(s)=OsGAUT8;Oryzabase Gene Name Synonym(s)=galacturonosyltransferase 8;Note=Similar to Glycosyltransferase QUASIMODO1 (EC 2.4.1.-).;Transcript_evidence=AK100641 (DDBJ%2C Best hit);ORF_evidence=Q2L3C5 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 8 (IPR002495);NIAS_FLcDNA=J023110G15;Oryzabase=23268;Expression=AK100641;TENOR=Os09t0480400-01;KEGG=Os09t0480400-01
Chr09	irgsp1_rep	five_prime_UTR	18441091	18441243	.	+	.	Parent=Os09t0480400-01
Chr09	irgsp1_rep	CDS	18441244	18441373	.	+	0	Parent=Os09t0480400-01
Chr09	irgsp1_rep	CDS	18441477	18441551	.	+	2	Parent=Os09t0480400-01
Chr09	irgsp1_rep	CDS	18441749	18442161	.	+	2	Parent=Os09t0480400-01
Chr09	irgsp1_rep	CDS	18442697	18442992	.	+	0	Parent=Os09t0480400-01
Chr09	irgsp1_rep	CDS	18443107	18443464	.	+	1	Parent=Os09t0480400-01
Chr09	irgsp1_rep	CDS	18443567	18444142	.	+	0	Parent=Os09t0480400-01
Chr09	irgsp1_rep	CDS	18444607	18444882	.	+	0	Parent=Os09t0480400-01
Chr09	irgsp1_rep	three_prime_UTR	18444883	18445139	.	+	.	Parent=Os09t0480400-01
Chr09	irgsp1_rep	mRNA	18442753	18444878	.	-	.	ID=Os09t0480466-00;Name=Os09t0480466-00;Locus_id=Os09g0480466;Note=Non-protein coding transcript.;Transcript_evidence=tplb0056b02 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os09t0480466-00
Chr09	irgsp1_rep	exon	18444584	18444878	.	-	.	Parent=Os09t0480466-00
Chr09	irgsp1_rep	exon	18443552	18444120	.	-	.	Parent=Os09t0480466-00
Chr09	irgsp1_rep	exon	18443112	18443447	.	-	.	Parent=Os09t0480466-00
Chr09	irgsp1_rep	exon	18442753	18442997	.	-	.	Parent=Os09t0480466-00
Chr09	irgsp1_rep	mRNA	18445770	18446204	.	+	.	ID=Os09t0480532-00;Name=Os09t0480532-00;Locus_id=Os09g0480532;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q69QS1 (UniProt);TENOR=Os09t0480532-00
Chr09	irgsp1_rep	CDS	18445770	18446204	.	+	0	Parent=Os09t0480532-00
Chr09	irgsp1_rep	mRNA	18448401	18449178	.	+	.	ID=Os09t0480600-01;Name=Os09t0480600-01;Locus_id=Os09g0480600;Note=Conserved hypothetical protein.;Transcript_evidence=AK107853 (DDBJ%2C Best hit);ORF_evidence=A3BZZ7 (UniProt);NIAS_FLcDNA=002-134-A11;Expression=AK107853;TENOR=Os09t0480600-01;KEGG=Os09t0480600-01
Chr09	irgsp1_rep	five_prime_UTR	18448401	18448426	.	+	.	Parent=Os09t0480600-01
Chr09	irgsp1_rep	CDS	18448427	18448717	.	+	0	Parent=Os09t0480600-01
Chr09	irgsp1_rep	three_prime_UTR	18448718	18449178	.	+	.	Parent=Os09t0480600-01
Chr09	irgsp1_rep	mRNA	18451612	18452708	.	+	.	ID=Os09t0480700-01;Name=Os09t0480700-01;Locus_id=Os09g0480700;CGSNL Gene Symbol=HAP5E;CGSNL Gene Name=HAP5E SUBUNIT OF CCAAT-BOX BINDING COMPLEX;Oryzabase Gene Symbol Synonym(s)=OsHAP5E%2C NF-YC%2C CBF-C%2C OsNF-YC7%2C Os-NF-YC7%2C NF-YC7%2C NFYC7;Oryzabase Gene Name Synonym(s)=Nuclear factor Y C7 subunit%2C Nuclear factor Y C subunit 7%2C NUCLEAR FACTOR-Y subunit C7%2C NUCLEAR FACTOR-Y subunit NF-YC7%2C NF-YC subunit 7%2C NF-YC family 7;Note=Similar to Transcription factor Hap5a-like protein.;Transcript_evidence=AK105156 (DDBJ%2C Best hit);ORF_evidence=B6SII8 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Transcription factor CBF/NF-Y/archaeal histone (IPR003958),Histone-fold (IPR009072);NIAS_FLcDNA=001-103-G06;Oryzabase=8495;Expression=AK105156;TENOR=Os09t0480700-01;KEGG=Os09t0480700-01
Chr09	irgsp1_rep	five_prime_UTR	18451612	18451612	.	+	.	Parent=Os09t0480700-01
Chr09	irgsp1_rep	CDS	18451613	18451691	.	+	0	Parent=Os09t0480700-01
Chr09	irgsp1_rep	CDS	18451868	18452295	.	+	2	Parent=Os09t0480700-01
Chr09	irgsp1_rep	three_prime_UTR	18452296	18452708	.	+	.	Parent=Os09t0480700-01
Chr09	irgsp1_rep	mRNA	18456846	18457443	.	+	.	ID=Os09t0480900-01;Name=Os09t0480900-01;Locus_id=Os09g0480900;CGSNL Gene Symbol=RA8;CGSNL Gene Name=ANTHER-SPECIFIC PROTEIN 8;Oryzabase Gene Symbol Synonym(s)=OsBURP15%2C BURP15;Oryzabase Gene Name Synonym(s)=BURP domain-containing protein 15%2C Anther-specific protein 8;Note=Similar to Anther-specific protein.;Transcript_evidence=AK109240 (DDBJ%2C Best hit);ORF_evidence=Q69QR8 (UniProt);NIAS_FLcDNA=002-156-F12;Oryzabase=6384;Expression=AK109240;TENOR=Os09t0480900-01;KEGG=Os09t0480900-01
Chr09	irgsp1_rep	five_prime_UTR	18456846	18457052	.	+	.	Parent=Os09t0480900-01
Chr09	irgsp1_rep	CDS	18457053	18457292	.	+	0	Parent=Os09t0480900-01
Chr09	irgsp1_rep	three_prime_UTR	18457293	18457443	.	+	.	Parent=Os09t0480900-01
Chr09	irgsp1_rep	mRNA	18457886	18458443	.	+	.	ID=Os09t0481000-00;Name=Os09t0481000-00;Locus_id=Os09g0481000;Note=Similar to BURP domain-containing protein 15.;Transcript_evidence=ab initio prediction;ORF_evidence=Q69QR8 (UniProt);InterPro=BURP (IPR004873);TENOR=Os09t0481000-00
Chr09	irgsp1_rep	CDS	18457886	18458443	.	+	0	Parent=Os09t0481000-00
Chr09	irgsp1_rep	mRNA	18464265	18469034	.	+	.	ID=Os09t0481100-01;Name=Os09t0481100-01;Locus_id=Os09g0481100;Oryzabase Gene Symbol Synonym(s)=OsSNDP10%2C SNDP10;Oryzabase Gene Name Synonym(s)=Sec14-nodulin domain-containing protein 10%2C Sec14-nodulin domain protein 10;Note=Similar to Phosphatidylinositol transfer-like protein IV.;Transcript_evidence=AK063554 (DDBJ%2C Best hit);ORF_evidence=B6U127 (UniProt);InterPro=Cellular retinaldehyde-binding/triple function%2C C-terminal (IPR001251),Cellular retinaldehyde-binding/triple function%2C N-terminal (IPR008273),Phosphatidylinositol transfer protein-like%2C N-terminal (IPR011074);NIAS_FLcDNA=001-117-E06;Oryzabase=12294;Expression=AK063554;TENOR=Os09t0481100-01;KEGG=Os09t0481100-01
Chr09	irgsp1_rep	five_prime_UTR	18464265	18464421	.	+	.	Parent=Os09t0481100-01
Chr09	irgsp1_rep	five_prime_UTR	18464820	18464851	.	+	.	Parent=Os09t0481100-01
Chr09	irgsp1_rep	CDS	18464852	18464858	.	+	0	Parent=Os09t0481100-01
Chr09	irgsp1_rep	CDS	18464952	18465237	.	+	2	Parent=Os09t0481100-01
Chr09	irgsp1_rep	CDS	18465325	18465424	.	+	1	Parent=Os09t0481100-01
Chr09	irgsp1_rep	CDS	18465532	18465798	.	+	0	Parent=Os09t0481100-01
Chr09	irgsp1_rep	CDS	18465937	18466014	.	+	0	Parent=Os09t0481100-01
Chr09	irgsp1_rep	CDS	18466095	18466196	.	+	0	Parent=Os09t0481100-01
Chr09	irgsp1_rep	CDS	18466279	18466328	.	+	0	Parent=Os09t0481100-01
Chr09	irgsp1_rep	CDS	18466444	18466540	.	+	1	Parent=Os09t0481100-01
Chr09	irgsp1_rep	CDS	18466693	18466792	.	+	0	Parent=Os09t0481100-01
Chr09	irgsp1_rep	CDS	18466897	18467012	.	+	2	Parent=Os09t0481100-01
Chr09	irgsp1_rep	CDS	18467146	18467317	.	+	0	Parent=Os09t0481100-01
Chr09	irgsp1_rep	CDS	18467516	18467868	.	+	2	Parent=Os09t0481100-01
Chr09	irgsp1_rep	CDS	18468463	18468549	.	+	0	Parent=Os09t0481100-01
Chr09	irgsp1_rep	CDS	18468632	18468652	.	+	0	Parent=Os09t0481100-01
Chr09	irgsp1_rep	three_prime_UTR	18468653	18469034	.	+	.	Parent=Os09t0481100-01
Chr09	irgsp1_rep	mRNA	18469730	18470397	.	+	.	ID=Os09t0481200-01;Name=Os09t0481200-01;Locus_id=Os09g0481200;CGSNL Gene Symbol=PSAG;CGSNL Gene Name=PHOTOSYSTEM I SUBUNIT;Oryzabase Gene Symbol Synonym(s)=PsaG%2C OsPSAG;Oryzabase Gene Name Synonym(s)=PSI subunit PsaG%2C photosystem I subunit PsaG;Note=Similar to photosystem I reaction center subunit V.;Transcript_evidence=AK098847 (DDBJ%2C Best hit),AK061695 (DDBJ%2C Best hit);ORF_evidence=NP_001151214.1 (RefSeq);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem I (GO:0009522),Cellular Component: membrane (GO:0016020),Molecular Function: chlorophyll binding (GO:0016168);InterPro=Photosystem I PsaG/PsaK protein (IPR000549),Photosystem I PsaG/PsaK%2C plant (IPR016370),Photosystem I PsaG%2C plant (IPR017494),Photosystem I PsaG/PsaK domain (IPR023618);NIAS_FLcDNA=J013000C21,001-037-C08;Oryzabase=9589;TENOR=Os09t0481200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	18469730	18469730	.	+	.	Parent=Os09t0481200-01
Chr09	irgsp1_rep	CDS	18469731	18470222	.	+	0	Parent=Os09t0481200-01
Chr09	irgsp1_rep	three_prime_UTR	18470223	18470397	.	+	.	Parent=Os09t0481200-01
Chr09	irgsp1_rep	mRNA	18470587	18473910	.	-	.	ID=Os09t0481300-01;Name=Os09t0481300-01;Locus_id=Os09g0481300;Note=Similar to Rwp34 (Fragment).;Transcript_evidence=AK241295 (DDBJ%2C Best hit);ORF_evidence=Q646W9 (UniProt);NIAS_FLcDNA=J065138K18;TENOR=Os09t0481300-01;KEGG=Os09t0481300-01
Chr09	irgsp1_rep	five_prime_UTR	18473709	18473910	.	-	.	Parent=Os09t0481300-01
Chr09	irgsp1_rep	CDS	18473542	18473708	.	-	0	Parent=Os09t0481300-01
Chr09	irgsp1_rep	CDS	18472634	18473403	.	-	1	Parent=Os09t0481300-01
Chr09	irgsp1_rep	CDS	18470835	18471481	.	-	2	Parent=Os09t0481300-01
Chr09	irgsp1_rep	three_prime_UTR	18470587	18470834	.	-	.	Parent=Os09t0481300-01
Chr09	irgsp1_rep	mRNA	18475033	18476381	.	-	.	ID=Os09t0481400-01;Name=Os09t0481400-01;Locus_id=Os09g0481400;Note=Similar to Caffeoyl-CoA O-methyltransferase (EC 2.1.1.104) (Trans-caffeoyl-CoA 3- O-methyltransferase) (CCoAMT) (CCoAOMT).;Transcript_evidence=AK108479 (DDBJ%2C Best hit);ORF_evidence=B6TGD3 (UniProt);GO=Molecular Function: O-methyltransferase activity (GO:0008171);InterPro=O-methyltransferase%2C family 3 (IPR002935);NIAS_FLcDNA=002-143-F02;Expression=AK108479;TENOR=Os09t0481400-01;KEGG=Os09t0481400-01 (EC:2.1.1.104)
Chr09	irgsp1_rep	five_prime_UTR	18476335	18476381	.	-	.	Parent=Os09t0481400-01
Chr09	irgsp1_rep	CDS	18476224	18476334	.	-	0	Parent=Os09t0481400-01
Chr09	irgsp1_rep	CDS	18476035	18476114	.	-	0	Parent=Os09t0481400-01
Chr09	irgsp1_rep	CDS	18475769	18475913	.	-	1	Parent=Os09t0481400-01
Chr09	irgsp1_rep	CDS	18475554	18475688	.	-	0	Parent=Os09t0481400-01
Chr09	irgsp1_rep	CDS	18475168	18475473	.	-	0	Parent=Os09t0481400-01
Chr09	irgsp1_rep	three_prime_UTR	18475033	18475167	.	-	.	Parent=Os09t0481400-01
Chr09	irgsp1_rep	mRNA	18493032	18494879	.	+	.	ID=Os09t0481600-01;Name=Os09t0481600-01;Locus_id=Os09g0481600;Note=Similar to tir-nbs resistance protein.;Transcript_evidence=AK108636 (DDBJ%2C Best hit);ORF_evidence=XP_002299081.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182),ATPase%2C AAA+ type%2C core (IPR003593);NIAS_FLcDNA=002-147-G06;TENOR=Os09t0481600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	18493032	18493033	.	+	.	Parent=Os09t0481600-01
Chr09	irgsp1_rep	CDS	18493034	18494713	.	+	0	Parent=Os09t0481600-01
Chr09	irgsp1_rep	three_prime_UTR	18494714	18494879	.	+	.	Parent=Os09t0481600-01
Chr09	irgsp1_rep	mRNA	18495820	18496404	.	+	.	ID=Os09t0481650-00;Name=Os09t0481650-00;Locus_id=Os09g0481650;Note=Similar to Polyubiquitin-like protein.;Transcript_evidence=EU963835 (DDBJ);ORF_evidence=Q2L3S3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin (IPR000626),Ubiquitin supergroup (IPR019955);TENOR=Os09t0481650-00;KEGG=Os09t0481650-00
Chr09	irgsp1_rep	five_prime_UTR	18495820	18495825	.	+	.	Parent=Os09t0481650-00
Chr09	irgsp1_rep	CDS	18495826	18496404	.	+	0	Parent=Os09t0481650-00
Chr09	irgsp1_rep	mRNA	18496976	18501218	.	-	.	ID=Os09t0481700-01;Name=Os09t0481700-01;Locus_id=Os09g0481700;CGSNL Gene Symbol=WRKY90;CGSNL Gene Name=WRKY GENE 90;Oryzabase Gene Symbol Synonym(s)=OsWRKY90;Oryzabase Gene Name Synonym(s)=Rice WRKY gene90;Note=SUSIBA2-like (WRKY transcription factor 80).;Transcript_evidence=AK065078 (DDBJ%2C Best hit);ORF_evidence=Q8H6W1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);NIAS_FLcDNA=J013001K23;Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6596;Expression=AK065078;TENOR=Os09t0481700-01;KEGG=Os09t0481700-01
Chr09	irgsp1_rep	five_prime_UTR	18500627	18501218	.	-	.	Parent=Os09t0481700-01
Chr09	irgsp1_rep	five_prime_UTR	18499901	18499922	.	-	.	Parent=Os09t0481700-01
Chr09	irgsp1_rep	CDS	18499445	18499900	.	-	0	Parent=Os09t0481700-01
Chr09	irgsp1_rep	CDS	18498856	18499026	.	-	0	Parent=Os09t0481700-01
Chr09	irgsp1_rep	CDS	18498158	18498696	.	-	0	Parent=Os09t0481700-01
Chr09	irgsp1_rep	CDS	18497883	18498077	.	-	1	Parent=Os09t0481700-01
Chr09	irgsp1_rep	CDS	18497222	18497762	.	-	1	Parent=Os09t0481700-01
Chr09	irgsp1_rep	three_prime_UTR	18496976	18497221	.	-	.	Parent=Os09t0481700-01
Chr09	irgsp1_rep	mRNA	18496976	18499924	.	-	.	ID=Os09t0481700-02;Name=Os09t0481700-02;Locus_id=Os09g0481700;CGSNL Gene Symbol=WRKY90;CGSNL Gene Name=WRKY GENE 90;Oryzabase Gene Symbol Synonym(s)=OsWRKY90;Oryzabase Gene Name Synonym(s)=Rice WRKY gene90;Note=SUSIBA2-like (WRKY transcription factor 80).;Transcript_evidence=AK103745 (DDBJ%2C Best hit);ORF_evidence=Q8H6W1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);NIAS_FLcDNA=J033138N11;Oryzabase=6596;Expression=AK103745;TENOR=Os09t0481700-02;KEGG=Os09t0481700-02
Chr09	irgsp1_rep	five_prime_UTR	18499901	18499924	.	-	.	Parent=Os09t0481700-02
Chr09	irgsp1_rep	CDS	18499445	18499900	.	-	0	Parent=Os09t0481700-02
Chr09	irgsp1_rep	CDS	18498856	18499026	.	-	0	Parent=Os09t0481700-02
Chr09	irgsp1_rep	CDS	18498158	18498696	.	-	0	Parent=Os09t0481700-02
Chr09	irgsp1_rep	CDS	18497883	18498077	.	-	1	Parent=Os09t0481700-02
Chr09	irgsp1_rep	CDS	18497222	18497762	.	-	1	Parent=Os09t0481700-02
Chr09	irgsp1_rep	three_prime_UTR	18496976	18497221	.	-	.	Parent=Os09t0481700-02
Chr09	irgsp1_rep	mRNA	18508899	18510757	.	-	.	ID=Os09t0481800-01;Name=Os09t0481800-01;Locus_id=Os09g0481800;Note=Nitrogen-fixing NifU%2C C-terminal domain containing protein.;Transcript_evidence=AK062669 (DDBJ%2C Best hit);ORF_evidence=B8BCT7 (UniProt);GO=Biological Process: iron-sulfur cluster assembly (GO:0016226),Molecular Function: iron ion binding (GO:0005506),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=NIF system FeS cluster assembly%2C NifU%2C C-terminal (IPR001075);NIAS_FLcDNA=001-105-G02;Expression=AK062669;TENOR=Os09t0481800-01;KEGG=Os09t0481800-01
Chr09	irgsp1_rep	five_prime_UTR	18510736	18510757	.	-	.	Parent=Os09t0481800-01
Chr09	irgsp1_rep	CDS	18510493	18510735	.	-	0	Parent=Os09t0481800-01
Chr09	irgsp1_rep	CDS	18510332	18510368	.	-	0	Parent=Os09t0481800-01
Chr09	irgsp1_rep	CDS	18510121	18510242	.	-	2	Parent=Os09t0481800-01
Chr09	irgsp1_rep	CDS	18509812	18509874	.	-	0	Parent=Os09t0481800-01
Chr09	irgsp1_rep	three_prime_UTR	18509811	18509811	.	-	.	Parent=Os09t0481800-01
Chr09	irgsp1_rep	three_prime_UTR	18508899	18509267	.	-	.	Parent=Os09t0481800-01
Chr09	irgsp1_rep	mRNA	18511782	18514353	.	-	.	ID=Os09t0482000-01;Name=Os09t0482000-01;Locus_id=Os09g0482000;Note=UBX domain containing protein.;Transcript_evidence=AK107144 (DDBJ%2C Best hit);ORF_evidence=Q2L3D7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=UBX (IPR001012),UAS (IPR006577);NIAS_FLcDNA=002-124-D06;Expression=AK107144;TENOR=Os09t0482000-01;KEGG=Os09t0482000-01
Chr09	irgsp1_rep	five_prime_UTR	18514262	18514353	.	-	.	Parent=Os09t0482000-01
Chr09	irgsp1_rep	CDS	18513701	18514261	.	-	0	Parent=Os09t0482000-01
Chr09	irgsp1_rep	CDS	18512663	18512878	.	-	0	Parent=Os09t0482000-01
Chr09	irgsp1_rep	CDS	18512384	18512566	.	-	0	Parent=Os09t0482000-01
Chr09	irgsp1_rep	CDS	18511820	18512050	.	-	0	Parent=Os09t0482000-01
Chr09	irgsp1_rep	three_prime_UTR	18511782	18511819	.	-	.	Parent=Os09t0482000-01
Chr09	irgsp1_rep	mRNA	18514776	18518316	.	-	.	ID=Os09t0482100-01;Name=Os09t0482100-01;Locus_id=Os09g0482100;CGSNL Gene Symbol=HSP82B;CGSNL Gene Name=HEAT SHOCK PROTEIN 82B;Oryzabase Gene Symbol Synonym(s)=OsHSP82%2C hsp82B%2C HSP82;Oryzabase Gene Name Synonym(s)=Heat shock protein 82%2C Heat shock protein 81-2;Note=Similar to Heat shock protein 82.;Transcript_evidence=AK064780 (DDBJ%2C Best hit);ORF_evidence=Q69QQ6 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: response to stress (GO:0006950),Molecular Function: ATP binding (GO:0005524),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein Hsp90 (IPR001404),ATPase-like%2C ATP-binding domain (IPR003594),Heat shock protein Hsp90%2C conserved site (IPR019805),Ribosomal protein S5 domain 2-type fold (IPR020568),Heat shock protein Hsp90%2C N-terminal (IPR020575);NIAS_FLcDNA=J013000B06;Oryzabase=14364;TENOR=Os09t0482100-01;KEGG=Os09t0482100-01
Chr09	irgsp1_rep	five_prime_UTR	18518192	18518316	.	-	.	Parent=Os09t0482100-01
Chr09	irgsp1_rep	CDS	18518066	18518191	.	-	0	Parent=Os09t0482100-01
Chr09	irgsp1_rep	CDS	18517244	18517666	.	-	0	Parent=Os09t0482100-01
Chr09	irgsp1_rep	CDS	18514960	18516510	.	-	0	Parent=Os09t0482100-01
Chr09	irgsp1_rep	three_prime_UTR	18514776	18514959	.	-	.	Parent=Os09t0482100-01
Chr09	irgsp1_rep	mRNA	18521580	18523903	.	+	.	ID=Os09t0482200-01;Name=Os09t0482200-01;Locus_id=Os09g0482200;Note=Peptidase A1 domain containing protein.;Transcript_evidence=AK105666 (DDBJ%2C Best hit);ORF_evidence=Q2L3E7 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=001-200-H10;Expression=AK105666;TENOR=Os09t0482200-01;KEGG=Os09t0482200-01
Chr09	irgsp1_rep	five_prime_UTR	18521580	18521666	.	+	.	Parent=Os09t0482200-01
Chr09	irgsp1_rep	CDS	18521667	18521856	.	+	0	Parent=Os09t0482200-01
Chr09	irgsp1_rep	CDS	18522573	18523840	.	+	2	Parent=Os09t0482200-01
Chr09	irgsp1_rep	three_prime_UTR	18523841	18523903	.	+	.	Parent=Os09t0482200-01
Chr09	irgsp1_rep	mRNA	18522513	18524680	.	-	.	ID=Os09t0482300-01;Name=Os09t0482300-01;Locus_id=Os09g0482300;Oryzabase Gene Symbol Synonym(s)=GSC 381%2C OsLEA6;Oryzabase Gene Name Synonym(s)=group 6 Late Embryogenesis Abundant (LEA) protein%2C late embryogenesis abundant protein 6;Note=Late embryogenesis abundant protein%2C LEA-18 domain containing protein.;Transcript_evidence=AK108029 (DDBJ%2C Best hit);ORF_evidence=GeneMark;InterPro=Late embryogenesis abundant protein%2C LEA-18 (IPR018930);NIAS_FLcDNA=002-137-B01;Oryzabase=13715;TENOR=Os09t0482300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	18524680	18524680	.	-	.	Parent=Os09t0482300-01
Chr09	irgsp1_rep	CDS	18524287	18524679	.	-	0	Parent=Os09t0482300-01
Chr09	irgsp1_rep	three_prime_UTR	18524282	18524286	.	-	.	Parent=Os09t0482300-01
Chr09	irgsp1_rep	three_prime_UTR	18522513	18523836	.	-	.	Parent=Os09t0482300-01
Chr09	irgsp1_rep	mRNA	18525590	18529774	.	-	.	ID=Os09t0482400-01;Name=Os09t0482400-01;Locus_id=Os09g0482400;CGSNL Gene Symbol=HSP80.2;CGSNL Gene Name=80.2 KDA CLASS I HEAT SHOCK PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsHsp80.2%2C OsHSP80.2;Oryzabase Gene Name Synonym(s)=80.2 kDa heat shock protein%2C 80.2-kD heat shock protein;Note=Similar to Heat shock protein 81-3.;Transcript_evidence=AK061896 (DDBJ%2C Best hit),AK243675 (DDBJ%2C Best hit);ORF_evidence=Q07078 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: response to stress (GO:0006950),Molecular Function: ATP binding (GO:0005524),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein Hsp90 (IPR001404),ATPase-like%2C ATP-binding domain (IPR003594),Heat shock protein Hsp90%2C conserved site (IPR019805),Ribosomal protein S5 domain 2-type fold (IPR020568),Heat shock protein Hsp90%2C N-terminal (IPR020575);NIAS_FLcDNA=001-041-G11,J100090D21;Oryzabase=11891;Expression=AK061896;TENOR=Os09t0482400-01;KEGG=Os09t0482400-01
Chr09	irgsp1_rep	five_prime_UTR	18529651	18529774	.	-	.	Parent=Os09t0482400-01
Chr09	irgsp1_rep	CDS	18529525	18529650	.	-	0	Parent=Os09t0482400-01
Chr09	irgsp1_rep	CDS	18528703	18529125	.	-	0	Parent=Os09t0482400-01
Chr09	irgsp1_rep	CDS	18525806	18527356	.	-	0	Parent=Os09t0482400-01
Chr09	irgsp1_rep	three_prime_UTR	18525590	18525805	.	-	.	Parent=Os09t0482400-01
Chr09	irgsp1_rep	mRNA	18525623	18527160	.	-	.	ID=Os09t0482400-03;Name=Os09t0482400-03;Locus_id=Os09g0482400;CGSNL Gene Symbol=HSP80.2;CGSNL Gene Name=80.2 KDA CLASS I HEAT SHOCK PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsHsp80.2%2C OsHSP80.2;Oryzabase Gene Name Synonym(s)=80.2 kDa heat shock protein%2C 80.2-kD heat shock protein;Note=Similar to Heat shock protein 81-3.;Transcript_evidence=AK119663 (DDBJ%2C Best hit);ORF_evidence=Q07078 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: response to stress (GO:0006950),Molecular Function: ATP binding (GO:0005524),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein Hsp90 (IPR001404),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=002-141-B04;Oryzabase=11891;Expression=AK119663;TENOR=Os09t0482400-03;KEGG=Os09t0482400-03
Chr09	irgsp1_rep	five_prime_UTR	18527159	18527160	.	-	.	Parent=Os09t0482400-03
Chr09	irgsp1_rep	CDS	18525806	18527158	.	-	0	Parent=Os09t0482400-03
Chr09	irgsp1_rep	three_prime_UTR	18525623	18525805	.	-	.	Parent=Os09t0482400-03
Chr09	irgsp1_rep	mRNA	18533039	18535362	.	+	.	ID=Os09t0482500-01;Name=Os09t0482500-01;Locus_id=Os09g0482500;Note=Peptidase A1 domain containing protein.;Transcript_evidence=AK105666 (DDBJ%2C Best hit);ORF_evidence=Q2L3E7 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=001-200-H10;Expression=AK105666;TENOR=Os09t0482500-01;KEGG=Os09t0482500-01
Chr09	irgsp1_rep	five_prime_UTR	18533039	18533125	.	+	.	Parent=Os09t0482500-01
Chr09	irgsp1_rep	CDS	18533126	18533315	.	+	0	Parent=Os09t0482500-01
Chr09	irgsp1_rep	CDS	18534032	18535299	.	+	2	Parent=Os09t0482500-01
Chr09	irgsp1_rep	three_prime_UTR	18535300	18535362	.	+	.	Parent=Os09t0482500-01
Chr09	irgsp1_rep	mRNA	18533972	18536139	.	-	.	ID=Os09t0482550-01;Name=Os09t0482550-01;Locus_id=Os09g0482550;Oryzabase Gene Symbol Synonym(s)=OsHsp90%2C HSP90;Oryzabase Gene Name Synonym(s)=rice 90kDa heat shock protein%2C heat-shock protein 90%2C heat-shock protein 82%2C heat shock protein 82%2C heat-shock protein 86;Note=Late embryogenesis abundant protein%2C LEA-18 domain containing protein.;Transcript_evidence=AK108029 (DDBJ%2C Best hit);ORF_evidence=GeneMark;InterPro=Late embryogenesis abundant protein%2C LEA-18 (IPR018930);NIAS_FLcDNA=002-137-B01;Oryzabase=15611;TENOR=Os09t0482550-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	18536139	18536139	.	-	.	Parent=Os09t0482550-01
Chr09	irgsp1_rep	CDS	18535746	18536138	.	-	0	Parent=Os09t0482550-01
Chr09	irgsp1_rep	three_prime_UTR	18535741	18535745	.	-	.	Parent=Os09t0482550-01
Chr09	irgsp1_rep	three_prime_UTR	18533972	18535295	.	-	.	Parent=Os09t0482550-01
Chr09	irgsp1_rep	mRNA	18537088	18541201	.	-	.	ID=Os09t0482600-01;Name=Os09t0482600-01;Locus_id=Os09g0482600;Oryzabase Gene Symbol Synonym(s)=OsHsp90%2C HSP90;Oryzabase Gene Name Synonym(s)=rice 90kDa heat shock protein%2C heat-shock protein 90%2C heat-shock protein 82%2C heat shock protein 82%2C heat-shock protein 86;Note=Similar to Heat shock protein 81-3.;Transcript_evidence=AK243060 (DDBJ%2C Best hit);ORF_evidence=Q07078 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: response to stress (GO:0006950),Molecular Function: ATP binding (GO:0005524),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein Hsp90 (IPR001404),ATPase-like%2C ATP-binding domain (IPR003594),Heat shock protein Hsp90%2C conserved site (IPR019805),Ribosomal protein S5 domain 2-type fold (IPR020568),Heat shock protein Hsp90%2C N-terminal (IPR020575);NIAS_FLcDNA=J100014C16;Oryzabase=15611;TENOR=Os09t0482600-01;KEGG=Os09t0482600-01
Chr09	irgsp1_rep	five_prime_UTR	18541110	18541201	.	-	.	Parent=Os09t0482600-01
Chr09	irgsp1_rep	CDS	18540984	18541109	.	-	0	Parent=Os09t0482600-01
Chr09	irgsp1_rep	CDS	18540162	18540584	.	-	0	Parent=Os09t0482600-01
Chr09	irgsp1_rep	CDS	18537265	18538815	.	-	0	Parent=Os09t0482600-01
Chr09	irgsp1_rep	three_prime_UTR	18537088	18537264	.	-	.	Parent=Os09t0482600-01
Chr09	irgsp1_rep	mRNA	18537082	18538619	.	-	.	ID=Os09t0482600-02;Name=Os09t0482600-02;Locus_id=Os09g0482600;Oryzabase Gene Symbol Synonym(s)=OsHsp90%2C HSP90;Oryzabase Gene Name Synonym(s)=rice 90kDa heat shock protein%2C heat-shock protein 90%2C heat-shock protein 82%2C heat shock protein 82%2C heat-shock protein 86;Note=Similar to Heat shock protein 81-3.;Transcript_evidence=AK119663 (DDBJ%2C Best hit);ORF_evidence=Q07078 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: response to stress (GO:0006950),Molecular Function: ATP binding (GO:0005524),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein Hsp90 (IPR001404),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=002-141-B04;Oryzabase=15611;Expression=AK119663;TENOR=Os09t0482600-02;KEGG=Os09t0482600-02
Chr09	irgsp1_rep	five_prime_UTR	18538618	18538619	.	-	.	Parent=Os09t0482600-02
Chr09	irgsp1_rep	CDS	18537265	18538617	.	-	0	Parent=Os09t0482600-02
Chr09	irgsp1_rep	three_prime_UTR	18537082	18537264	.	-	.	Parent=Os09t0482600-02
Chr09	irgsp1_rep	mRNA	18543577	18549110	.	-	.	ID=Os09t0482620-00;Name=Os09t0482620-00;Locus_id=Os09g0482620;Oryzabase Gene Symbol Synonym(s)=OsSTA230;Note=Similar to Sodium/hydrogen exchanger 6.;Transcript_evidence=BT069314 (DDBJ);ORF_evidence=Q2L3E0 (UniProt);GO=Biological Process: cation transport (GO:0006812),Biological Process: sodium ion transport (GO:0006814),Biological Process: regulation of pH (GO:0006885),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: solute:hydrogen antiporter activity (GO:0015299),Molecular Function: sodium:hydrogen antiporter activity (GO:0015385);InterPro=Na+/H+ exchanger (IPR004709),Cation/H+ exchanger (IPR006153),Cation/H+ exchanger%2C CPA1 family (IPR018422);Oryzabase=19502;TENOR=Os09t0482620-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	18548765	18549110	.	-	0	Parent=Os09t0482620-00
Chr09	irgsp1_rep	CDS	18547981	18548032	.	-	2	Parent=Os09t0482620-00
Chr09	irgsp1_rep	CDS	18547790	18547874	.	-	1	Parent=Os09t0482620-00
Chr09	irgsp1_rep	CDS	18547523	18547608	.	-	0	Parent=Os09t0482620-00
Chr09	irgsp1_rep	CDS	18547320	18547431	.	-	1	Parent=Os09t0482620-00
Chr09	irgsp1_rep	CDS	18547145	18547241	.	-	0	Parent=Os09t0482620-00
Chr09	irgsp1_rep	CDS	18546963	18546976	.	-	2	Parent=Os09t0482620-00
Chr09	irgsp1_rep	three_prime_UTR	18546885	18546962	.	-	.	Parent=Os09t0482620-00
Chr09	irgsp1_rep	three_prime_UTR	18546658	18546714	.	-	.	Parent=Os09t0482620-00
Chr09	irgsp1_rep	three_prime_UTR	18545822	18545869	.	-	.	Parent=Os09t0482620-00
Chr09	irgsp1_rep	three_prime_UTR	18545683	18545743	.	-	.	Parent=Os09t0482620-00
Chr09	irgsp1_rep	three_prime_UTR	18545468	18545565	.	-	.	Parent=Os09t0482620-00
Chr09	irgsp1_rep	three_prime_UTR	18545324	18545399	.	-	.	Parent=Os09t0482620-00
Chr09	irgsp1_rep	three_prime_UTR	18544951	18545067	.	-	.	Parent=Os09t0482620-00
Chr09	irgsp1_rep	three_prime_UTR	18544758	18544867	.	-	.	Parent=Os09t0482620-00
Chr09	irgsp1_rep	three_prime_UTR	18544579	18544626	.	-	.	Parent=Os09t0482620-00
Chr09	irgsp1_rep	three_prime_UTR	18543881	18544012	.	-	.	Parent=Os09t0482620-00
Chr09	irgsp1_rep	three_prime_UTR	18543577	18543656	.	-	.	Parent=Os09t0482620-00
Chr09	irgsp1_rep	mRNA	18550671	18553851	.	+	.	ID=Os09t0482640-01;Name=Os09t0482640-01;Locus_id=Os09g0482640;CGSNL Gene Symbol=WAK87;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 87;Oryzabase Gene Symbol Synonym(s)=OsWAK87;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK099582 (DDBJ%2C Best hit);ORF_evidence=Q2L3D5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=EGF-type aspartate/asparagine hydroxylation site (IPR000152),Protein kinase%2C catalytic domain (IPR000719),EGF-like calcium-binding (IPR001881),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EGF-like calcium-binding%2C conserved site (IPR018097);NIAS_FLcDNA=J013041M17;Oryzabase=8012;TENOR=Os09t0482640-01;KEGG=Os09t0482640-01
Chr09	irgsp1_rep	five_prime_UTR	18550671	18552300	.	+	.	Parent=Os09t0482640-01
Chr09	irgsp1_rep	CDS	18552301	18552469	.	+	0	Parent=Os09t0482640-01
Chr09	irgsp1_rep	CDS	18552580	18553748	.	+	2	Parent=Os09t0482640-01
Chr09	irgsp1_rep	three_prime_UTR	18553749	18553851	.	+	.	Parent=Os09t0482640-01
Chr09	irgsp1_rep	mRNA	18550731	18553615	.	-	.	ID=Os09t0482650-00;Name=Os09t0482650-00;Locus_id=Os09g0482650;Note=Hypothetical protein.;Transcript_evidence=tplb0037c11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0482650-00
Chr09	irgsp1_rep	five_prime_UTR	18552500	18553615	.	-	.	Parent=Os09t0482650-00
Chr09	irgsp1_rep	five_prime_UTR	18551156	18551669	.	-	.	Parent=Os09t0482650-00
Chr09	irgsp1_rep	CDS	18550904	18551155	.	-	0	Parent=Os09t0482650-00
Chr09	irgsp1_rep	three_prime_UTR	18550731	18550903	.	-	.	Parent=Os09t0482650-00
Chr09	irgsp1_rep	mRNA	18558471	18561002	.	-	.	ID=Os09t0482660-01;Name=Os09t0482660-01;Locus_id=Os09g0482660;Oryzabase Gene Name Synonym(s)=Subtilisin-like protease;Note=Similar to Subtilisin-type protease.;Transcript_evidence=AK106911 (DDBJ%2C Best hit);ORF_evidence=NP_564107.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);NIAS_FLcDNA=002-119-A07;Oryzabase=19109;TENOR=Os09t0482660-01;KEGG=Os09t0482660-01
Chr09	irgsp1_rep	five_prime_UTR	18561002	18561002	.	-	.	Parent=Os09t0482660-01
Chr09	irgsp1_rep	CDS	18560684	18561001	.	-	0	Parent=Os09t0482660-01
Chr09	irgsp1_rep	CDS	18560422	18560525	.	-	0	Parent=Os09t0482660-01
Chr09	irgsp1_rep	CDS	18560055	18560300	.	-	1	Parent=Os09t0482660-01
Chr09	irgsp1_rep	CDS	18558557	18559460	.	-	1	Parent=Os09t0482660-01
Chr09	irgsp1_rep	three_prime_UTR	18558471	18558556	.	-	.	Parent=Os09t0482660-01
Chr09	irgsp1_rep	mRNA	18566043	18569106	.	-	.	ID=Os09t0482680-01;Name=Os09t0482680-01;Locus_id=Os09g0482680;RAP-DB Gene Symbol Synonym(s)=OsaTRZ2;RAP-DB Gene Name Synonym(s)=tRNase Z2;Note=tRNase Z%2C tRNA 3'-end processing enzyme%2C Chloroplast biogenesis;Transcript_evidence=AK070747;ORF_evidence=B7EIC7;InterPro=Ribonuclease Z/Hydroxyacylglutathione hydrolase-like (IPR036866),Metallo-beta-lactamase (IPR001279);NIAS_FLcDNA=J023066C10;Manual Curation=July 28%2C 2020;Literature_PMID=24034348;Oryzabase=22758;TENOR=Os09t0482680-01;KEGG=Os09t0482680-01 (EC:3.1.26.11);Subcellular location=chloroplast (GO:0009507)
Chr09	irgsp1_rep	five_prime_UTR	18569049	18569106	.	-	.	Parent=Os09t0482680-01
Chr09	irgsp1_rep	CDS	18568629	18569048	.	-	0	Parent=Os09t0482680-01
Chr09	irgsp1_rep	CDS	18567896	18568058	.	-	0	Parent=Os09t0482680-01
Chr09	irgsp1_rep	CDS	18567748	18567818	.	-	2	Parent=Os09t0482680-01
Chr09	irgsp1_rep	CDS	18567529	18567624	.	-	0	Parent=Os09t0482680-01
Chr09	irgsp1_rep	CDS	18567345	18567458	.	-	0	Parent=Os09t0482680-01
Chr09	irgsp1_rep	CDS	18566638	18566706	.	-	0	Parent=Os09t0482680-01
Chr09	irgsp1_rep	CDS	18566427	18566501	.	-	0	Parent=Os09t0482680-01
Chr09	irgsp1_rep	CDS	18566237	18566326	.	-	0	Parent=Os09t0482680-01
Chr09	irgsp1_rep	three_prime_UTR	18566043	18566236	.	-	.	Parent=Os09t0482680-01
Chr09	irgsp1_rep	mRNA	18558725	18561208	.	+	.	ID=Os09t0482681-00;Name=Os09t0482681-00;Locus_id=Os09g0482681;Note=Hypothetical protein.;Transcript_evidence=EU955468 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0482681-00
Chr09	irgsp1_rep	CDS	18558725	18559309	.	+	0	Parent=Os09t0482681-00
Chr09	irgsp1_rep	three_prime_UTR	18559310	18559445	.	+	.	Parent=Os09t0482681-00
Chr09	irgsp1_rep	three_prime_UTR	18560033	18560296	.	+	.	Parent=Os09t0482681-00
Chr09	irgsp1_rep	three_prime_UTR	18560589	18561208	.	+	.	Parent=Os09t0482681-00
Chr09	irgsp1_rep	mRNA	18564899	18565402	.	+	.	ID=Os09t0482700-00;Name=Os09t0482700-00;Locus_id=Os09g0482700;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001175898.1 (RefSeq);TENOR=Os09t0482700-00;KEGG=Os09t0482700-00
Chr09	irgsp1_rep	CDS	18564899	18565402	.	+	0	Parent=Os09t0482700-00
Chr09	irgsp1_rep	mRNA	18569806	18573988	.	-	.	ID=Os09t0482720-00;Name=Os09t0482720-00;Locus_id=Os09g0482720;Note=Similar to lipid binding protein.;Transcript_evidence=EU957756 (DDBJ);ORF_evidence=B6SYE1 (UniProt);GO=Molecular Function: lipid binding (GO:0008289);InterPro=Lipid-binding serum glycoprotein%2C C-terminal (IPR001124),Lipid-binding serum glycoprotein%2C N-terminal (IPR017942),Bactericidal permeability-increasing protein%2C alpha/beta domain (IPR017943);TENOR=Os09t0482720-00;KEGG=Os09t0482720-00
Chr09	irgsp1_rep	five_prime_UTR	18573822	18573988	.	-	.	Parent=Os09t0482720-00
Chr09	irgsp1_rep	CDS	18573417	18573821	.	-	0	Parent=Os09t0482720-00
Chr09	irgsp1_rep	CDS	18572597	18572736	.	-	0	Parent=Os09t0482720-00
Chr09	irgsp1_rep	CDS	18571590	18571944	.	-	1	Parent=Os09t0482720-00
Chr09	irgsp1_rep	CDS	18570816	18571064	.	-	0	Parent=Os09t0482720-00
Chr09	irgsp1_rep	CDS	18570351	18570476	.	-	0	Parent=Os09t0482720-00
Chr09	irgsp1_rep	CDS	18569806	18569997	.	-	0	Parent=Os09t0482720-00
Chr09	irgsp1_rep	mRNA	18576959	18581277	.	+	.	ID=Os09t0482740-01;Name=Os09t0482740-01;Locus_id=Os09g0482740;Note=Protein of unknown function DUF1664 family protein.;Transcript_evidence=AK061852 (DDBJ%2C Best hit);ORF_evidence=B8BCU2 (UniProt);InterPro=Protein of unknown function DUF1664 (IPR012458);NIAS_FLcDNA=001-040-F09;TENOR=Os09t0482740-01;KEGG=Os09t0482740-01
Chr09	irgsp1_rep	five_prime_UTR	18576959	18577108	.	+	.	Parent=Os09t0482740-01
Chr09	irgsp1_rep	CDS	18577109	18577163	.	+	0	Parent=Os09t0482740-01
Chr09	irgsp1_rep	CDS	18577307	18577368	.	+	2	Parent=Os09t0482740-01
Chr09	irgsp1_rep	CDS	18577777	18577845	.	+	0	Parent=Os09t0482740-01
Chr09	irgsp1_rep	CDS	18577991	18578072	.	+	0	Parent=Os09t0482740-01
Chr09	irgsp1_rep	CDS	18578553	18578623	.	+	2	Parent=Os09t0482740-01
Chr09	irgsp1_rep	CDS	18579227	18579328	.	+	0	Parent=Os09t0482740-01
Chr09	irgsp1_rep	CDS	18579418	18579507	.	+	0	Parent=Os09t0482740-01
Chr09	irgsp1_rep	CDS	18580147	18580221	.	+	0	Parent=Os09t0482740-01
Chr09	irgsp1_rep	CDS	18580317	18580349	.	+	0	Parent=Os09t0482740-01
Chr09	irgsp1_rep	CDS	18580424	18580504	.	+	0	Parent=Os09t0482740-01
Chr09	irgsp1_rep	CDS	18580641	18580700	.	+	0	Parent=Os09t0482740-01
Chr09	irgsp1_rep	CDS	18580793	18580969	.	+	0	Parent=Os09t0482740-01
Chr09	irgsp1_rep	three_prime_UTR	18580970	18581277	.	+	.	Parent=Os09t0482740-01
Chr09	irgsp1_rep	mRNA	18611277	18613048	.	+	.	ID=Os09t0482761-00;Name=Os09t0482761-00;Locus_id=Os09g0482761;Note=Conserved hypothetical protein.;Transcript_evidence=AK362980 (DDBJ);ORF_evidence=C0PFJ6 (UniProt);TENOR=Os09t0482761-00
Chr09	irgsp1_rep	five_prime_UTR	18611277	18611501	.	+	.	Parent=Os09t0482761-00
Chr09	irgsp1_rep	CDS	18611502	18612248	.	+	0	Parent=Os09t0482761-00
Chr09	irgsp1_rep	three_prime_UTR	18612249	18612353	.	+	.	Parent=Os09t0482761-00
Chr09	irgsp1_rep	three_prime_UTR	18612917	18613048	.	+	.	Parent=Os09t0482761-00
Chr09	irgsp1_rep	mRNA	18611431	18612411	.	-	.	ID=Os09t0482780-01;Name=Os09t0482780-01;Locus_id=Os09g0482780;CGSNL Gene Symbol=FLA27;CGSNL Gene Name=FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 27;Oryzabase Gene Symbol Synonym(s)=OsFLA27;Oryzabase Gene Name Synonym(s)=fasciclin-like AGP 27%2C fasciclin-like arabinogalactan protein 27;Note=FAS1 domain domain containing protein.;Transcript_evidence=AK068476 (DDBJ%2C Best hit);ORF_evidence=B6ST53 (UniProt);InterPro=FAS1 domain (IPR000782);NIAS_FLcDNA=J013151O19;Oryzabase=11362;TENOR=Os09t0482780-01;KEGG=Os09t0482780-01
Chr09	irgsp1_rep	five_prime_UTR	18612345	18612411	.	-	.	Parent=Os09t0482780-01
Chr09	irgsp1_rep	CDS	18611691	18612344	.	-	0	Parent=Os09t0482780-01
Chr09	irgsp1_rep	CDS	18611540	18611608	.	-	0	Parent=Os09t0482780-01
Chr09	irgsp1_rep	three_prime_UTR	18611431	18611539	.	-	.	Parent=Os09t0482780-01
Chr09	irgsp1_rep	mRNA	18618052	18618753	.	+	.	ID=Os09t0482800-01;Name=Os09t0482800-01;Locus_id=Os09g0482800;Note=EF hand domain containing protein.;Transcript_evidence=AK121809 (DDBJ%2C Best hit),AK063923 (DDBJ%2C Best hit);ORF_evidence=A2Z2H3 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J033097N16,001-123-B12;TENOR=Os09t0482800-01;KEGG=Os09t0482800-01
Chr09	irgsp1_rep	five_prime_UTR	18618052	18618110	.	+	.	Parent=Os09t0482800-01
Chr09	irgsp1_rep	CDS	18618111	18618524	.	+	0	Parent=Os09t0482800-01
Chr09	irgsp1_rep	three_prime_UTR	18618525	18618753	.	+	.	Parent=Os09t0482800-01
Chr09	irgsp1_rep	mRNA	18622729	18626527	.	-	.	ID=Os09t0482821-01;Name=Os09t0482821-01;Locus_id=Os09g0482821;Note=Conserved hypothetical protein.;Transcript_evidence=AK288573 (DDBJ%2C Best hit);ORF_evidence=Q2QXV1 (UniProt);NIAS_FLcDNA=J090048H20;TENOR=Os09t0482821-01
Chr09	irgsp1_rep	five_prime_UTR	18624120	18626527	.	-	.	Parent=Os09t0482821-01
Chr09	irgsp1_rep	CDS	18623580	18624119	.	-	0	Parent=Os09t0482821-01
Chr09	irgsp1_rep	three_prime_UTR	18622729	18623579	.	-	.	Parent=Os09t0482821-01
Chr09	irgsp1_rep	mRNA	18641600	18642303	.	+	.	ID=Os09t0482840-01;Name=Os09t0482840-01;Locus_id=Os09g0482840;Note=EF hand domain containing protein.;Transcript_evidence=AK064644 (DDBJ%2C Best hit);ORF_evidence=XP_002880102.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249);NIAS_FLcDNA=002-114-C07;TENOR=Os09t0482840-01;KEGG=Os09t0482840-01
Chr09	irgsp1_rep	five_prime_UTR	18641600	18641673	.	+	.	Parent=Os09t0482840-01
Chr09	irgsp1_rep	CDS	18641674	18642087	.	+	0	Parent=Os09t0482840-01
Chr09	irgsp1_rep	three_prime_UTR	18642088	18642303	.	+	.	Parent=Os09t0482840-01
Chr09	irgsp1_rep	mRNA	18642413	18643998	.	-	.	ID=Os09t0482860-01;Name=Os09t0482860-01;Locus_id=Os09g0482860;Note=Similar to cDNA clone:001-204-H11%2C full insert sequence.;Transcript_evidence=AK071910 (DDBJ%2C Best hit),AK099026 (DDBJ%2C Best hit),AK105917 (DDBJ%2C Best hit);ORF_evidence=B7END2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J013064H13,J013127L05,001-204-H11;TENOR=Os09t0482860-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	18643890	18643998	.	-	.	Parent=Os09t0482860-01
Chr09	irgsp1_rep	CDS	18643074	18643889	.	-	0	Parent=Os09t0482860-01
Chr09	irgsp1_rep	three_prime_UTR	18642413	18643073	.	-	.	Parent=Os09t0482860-01
Chr09	irgsp1_rep	mRNA	18657575	18659177	.	-	.	ID=Os09t0482900-01;Name=Os09t0482900-01;Locus_id=Os09g0482900;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK243432 (DDBJ%2C Best hit);ORF_evidence=NP_001063505.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J100067P13;TENOR=Os09t0482900-01;KEGG=Os09t0482900-01 (EC:2.4.1.17)
Chr09	irgsp1_rep	five_prime_UTR	18659093	18659177	.	-	.	Parent=Os09t0482900-01
Chr09	irgsp1_rep	CDS	18657659	18659092	.	-	0	Parent=Os09t0482900-01
Chr09	irgsp1_rep	three_prime_UTR	18657575	18657658	.	-	.	Parent=Os09t0482900-01
Chr09	irgsp1_rep	mRNA	18662882	18663545	.	+	.	ID=Os09t0483100-01;Name=Os09t0483100-01;Locus_id=Os09g0483100;Note=EF-Hand type domain containing protein.;Transcript_evidence=AK107051 (DDBJ%2C Best hit);ORF_evidence=XP_002880102.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249);NIAS_FLcDNA=002-121-D02;Expression=AK107051;TENOR=Os09t0483100-01;KEGG=Os09t0483100-01
Chr09	irgsp1_rep	five_prime_UTR	18662882	18662939	.	+	.	Parent=Os09t0483100-01
Chr09	irgsp1_rep	CDS	18662940	18663356	.	+	0	Parent=Os09t0483100-01
Chr09	irgsp1_rep	three_prime_UTR	18663357	18663545	.	+	.	Parent=Os09t0483100-01
Chr09	irgsp1_rep	mRNA	18664144	18665315	.	-	.	ID=Os09t0483150-00;Name=Os09t0483150-00;Locus_id=Os09g0483150;Note=Hypothetical gene.;Transcript_evidence=BT018987 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0483150-00
Chr09	irgsp1_rep	five_prime_UTR	18665315	18665315	.	-	.	Parent=Os09t0483150-00
Chr09	irgsp1_rep	CDS	18665252	18665314	.	-	0	Parent=Os09t0483150-00
Chr09	irgsp1_rep	CDS	18664867	18665083	.	-	0	Parent=Os09t0483150-00
Chr09	irgsp1_rep	CDS	18664144	18664248	.	-	2	Parent=Os09t0483150-00
Chr09	irgsp1_rep	mRNA	18664039	18665358	.	+	.	ID=Os09t0483200-00;Name=Os09t0483200-00;Locus_id=Os09g0483200;Oryzabase Gene Name Synonym(s)=ubiquitin fusion protein;Note=Similar to Ubiquitin/ribosomal fusion protein (Fragment).;Transcript_evidence=AK373540 (DDBJ);ORF_evidence=Q7XYD4 (UniProt);Oryzabase=22023;TENOR=Os09t0483200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	18664039	18664250	.	+	0	Parent=Os09t0483200-00
Chr09	irgsp1_rep	CDS	18664869	18665076	.	+	1	Parent=Os09t0483200-00
Chr09	irgsp1_rep	CDS	18665245	18665358	.	+	0	Parent=Os09t0483200-00
Chr09	irgsp1_rep	mRNA	18667422	18668125	.	+	.	ID=Os09t0483300-01;Name=Os09t0483300-01;Locus_id=Os09g0483300;Note=EF hand domain containing protein.;Transcript_evidence=AK241233 (DDBJ%2C Best hit);ORF_evidence=XP_002880102.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J065128C23;TENOR=Os09t0483300-01;KEGG=Os09t0483300-01
Chr09	irgsp1_rep	five_prime_UTR	18667422	18667516	.	+	.	Parent=Os09t0483300-01
Chr09	irgsp1_rep	CDS	18667517	18667939	.	+	0	Parent=Os09t0483300-01
Chr09	irgsp1_rep	three_prime_UTR	18667940	18668125	.	+	.	Parent=Os09t0483300-01
Chr09	irgsp1_rep	mRNA	18669392	18670972	.	-	.	ID=Os09t0483350-00;Name=Os09t0483350-00;Locus_id=Os09g0483350;Note=Non-protein coding transcript.;Transcript_evidence=BT018987 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0483350-00
Chr09	irgsp1_rep	exon	18670879	18670972	.	-	.	Parent=Os09t0483350-00
Chr09	irgsp1_rep	exon	18670574	18670742	.	-	.	Parent=Os09t0483350-00
Chr09	irgsp1_rep	exon	18669392	18669506	.	-	.	Parent=Os09t0483350-00
Chr09	irgsp1_rep	mRNA	18669321	18671699	.	+	.	ID=Os09t0483400-01;Name=Os09t0483400-01;Locus_id=Os09g0483400;CGSNL Gene Symbol=UBL40-4;CGSNL Gene Name=UBIQUITIN FUSION RIBOSOMAL PROTEIN L40-4;Oryzabase Gene Symbol Synonym(s)=UbL40-4%2C OsUbL40-4;Oryzabase Gene Name Synonym(s)=Ubiquitin/ribosomal protein S27a%2C ubiquitin fusion ribosomal protein L40-4;Note=Similar to Ubiquitin/ribosomal fusion protein (Fragment).;Transcript_evidence=AK103890 (DDBJ%2C Best hit);ORF_evidence=Q7XYD4 (UniProt);NIAS_FLcDNA=J033150D17;Oryzabase=17729;TENOR=Os09t0483400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	18669321	18669322	.	+	.	Parent=Os09t0483400-01
Chr09	irgsp1_rep	CDS	18669323	18669501	.	+	0	Parent=Os09t0483400-01
Chr09	irgsp1_rep	CDS	18670576	18670627	.	+	1	Parent=Os09t0483400-01
Chr09	irgsp1_rep	three_prime_UTR	18670628	18670783	.	+	.	Parent=Os09t0483400-01
Chr09	irgsp1_rep	three_prime_UTR	18670901	18670967	.	+	.	Parent=Os09t0483400-01
Chr09	irgsp1_rep	three_prime_UTR	18671375	18671699	.	+	.	Parent=Os09t0483400-01
Chr09	irgsp1_rep	mRNA	18672334	18673103	.	+	.	ID=Os09t0483500-01;Name=Os09t0483500-01;Locus_id=Os09g0483500;Note=EF-Hand type domain containing protein.;Transcript_evidence=AK121473 (DDBJ%2C Best hit);ORF_evidence=XP_002880102.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J023148I04;Expression=AK121473;TENOR=Os09t0483500-01;KEGG=Os09t0483500-01
Chr09	irgsp1_rep	five_prime_UTR	18672334	18672454	.	+	.	Parent=Os09t0483500-01
Chr09	irgsp1_rep	CDS	18672455	18672868	.	+	0	Parent=Os09t0483500-01
Chr09	irgsp1_rep	three_prime_UTR	18672869	18673103	.	+	.	Parent=Os09t0483500-01
Chr09	irgsp1_rep	mRNA	18673664	18674794	.	-	.	ID=Os09t0483600-01;Name=Os09t0483600-01;Locus_id=Os09g0483600;Oryzabase Gene Symbol Synonym(s)=JMJ714;Oryzabase Gene Name Synonym(s)=Jumonji 714;Note=Transcription factor jumonji/aspartyl beta-hydroxylase domain containing protein.;Transcript_evidence=AK101709 (DDBJ%2C Best hit);ORF_evidence=NP_001147606.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Transcription factor jumonji/aspartyl beta-hydroxylase (IPR003347);NIAS_FLcDNA=J033060L03;Oryzabase=15214;Expression=AK101709;TENOR=Os09t0483600-01;KEGG=Os09t0483600-01
Chr09	irgsp1_rep	five_prime_UTR	18674794	18674794	.	-	.	Parent=Os09t0483600-01
Chr09	irgsp1_rep	CDS	18673714	18674793	.	-	0	Parent=Os09t0483600-01
Chr09	irgsp1_rep	three_prime_UTR	18673664	18673713	.	-	.	Parent=Os09t0483600-01
Chr09	irgsp1_rep	mRNA	18675237	18676601	.	+	.	ID=Os09t0483700-00;Name=Os09t0483700-00;Locus_id=Os09g0483700;Note=Hypothetical protein.;Transcript_evidence=DQ245047 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0483700-00
Chr09	irgsp1_rep	five_prime_UTR	18675237	18675238	.	+	.	Parent=Os09t0483700-00
Chr09	irgsp1_rep	CDS	18675239	18675439	.	+	0	Parent=Os09t0483700-00
Chr09	irgsp1_rep	CDS	18676501	18676601	.	+	0	Parent=Os09t0483700-00
Chr09	irgsp1_rep	mRNA	18675333	18675714	.	-	.	ID=Os09t0483800-00;Name=Os09t0483800-00;Locus_id=Os09g0483800;Note=Similar to ZFP16-1.;Transcript_evidence=AY305867 (DDBJ%2C Best hit);ORF_evidence=NP_001150802.1 (RefSeq);TENOR=Os09t0483800-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	18675713	18675714	.	-	.	Parent=Os09t0483800-00
Chr09	irgsp1_rep	CDS	18675333	18675712	.	-	0	Parent=Os09t0483800-00
Chr09	irgsp1_rep	mRNA	18685679	18686798	.	+	.	ID=Os09t0484200-01;Name=Os09t0484200-01;Locus_id=Os09g0484200;Note=Hypothetical protein.;Transcript_evidence=AK073885 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J033073G16;Expression=AK073885;TENOR=Os09t0484200-01;KEGG=Os09t0484200-01
Chr09	irgsp1_rep	five_prime_UTR	18685679	18685806	.	+	.	Parent=Os09t0484200-01
Chr09	irgsp1_rep	CDS	18685807	18685821	.	+	0	Parent=Os09t0484200-01
Chr09	irgsp1_rep	CDS	18685968	18686405	.	+	0	Parent=Os09t0484200-01
Chr09	irgsp1_rep	three_prime_UTR	18686406	18686798	.	+	.	Parent=Os09t0484200-01
Chr09	irgsp1_rep	mRNA	18686079	18686832	.	+	.	ID=Os09t0484200-02;Name=Os09t0484200-02;Locus_id=Os09g0484200;Note=Hypothetical gene.;Transcript_evidence=AK071106 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J023078N19;Expression=AK071106;TENOR=Os09t0484200-02;KEGG=Os09t0484200-02
Chr09	irgsp1_rep	CDS	18686079	18686303	.	+	0	Parent=Os09t0484200-02
Chr09	irgsp1_rep	CDS	18686346	18686405	.	+	0	Parent=Os09t0484200-02
Chr09	irgsp1_rep	three_prime_UTR	18686406	18686832	.	+	.	Parent=Os09t0484200-02
Chr09	irgsp1_rep	mRNA	18687767	18694202	.	-	.	ID=Os09t0484300-01;Name=Os09t0484300-01;Locus_id=Os09g0484300;Note=Similar to Polyubiquitin-like protein.;Transcript_evidence=AK102983 (DDBJ%2C Best hit);ORF_evidence=Q2L3D3 (UniProt);GO=Biological Process: protein modification process (GO:0006464),Cellular Component: intracellular (GO:0005622),Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=HECT (IPR000569),Ubiquitin supergroup (IPR019955);NIAS_FLcDNA=J033116A02;TENOR=Os09t0484300-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	18694088	18694202	.	-	.	Parent=Os09t0484300-01
Chr09	irgsp1_rep	CDS	18692290	18694087	.	-	0	Parent=Os09t0484300-01
Chr09	irgsp1_rep	CDS	18690352	18690885	.	-	2	Parent=Os09t0484300-01
Chr09	irgsp1_rep	CDS	18689328	18689375	.	-	2	Parent=Os09t0484300-01
Chr09	irgsp1_rep	CDS	18688719	18688984	.	-	2	Parent=Os09t0484300-01
Chr09	irgsp1_rep	three_prime_UTR	18687767	18688718	.	-	.	Parent=Os09t0484300-01
Chr09	irgsp1_rep	mRNA	18688366	18694178	.	-	.	ID=Os09t0484300-02;Name=Os09t0484300-02;Locus_id=Os09g0484300;Note=Similar to Polyubiquitin-like protein.;Transcript_evidence=AK119601 (DDBJ%2C Best hit);ORF_evidence=Q2L3D3 (UniProt);GO=Biological Process: protein modification process (GO:0006464),Cellular Component: intracellular (GO:0005622),Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=HECT (IPR000569),Ubiquitin supergroup (IPR019955);NIAS_FLcDNA=002-117-E06;TENOR=Os09t0484300-02;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	18694088	18694178	.	-	.	Parent=Os09t0484300-02
Chr09	irgsp1_rep	CDS	18692290	18694087	.	-	0	Parent=Os09t0484300-02
Chr09	irgsp1_rep	CDS	18690352	18690840	.	-	2	Parent=Os09t0484300-02
Chr09	irgsp1_rep	CDS	18689328	18689375	.	-	2	Parent=Os09t0484300-02
Chr09	irgsp1_rep	CDS	18688719	18688984	.	-	2	Parent=Os09t0484300-02
Chr09	irgsp1_rep	three_prime_UTR	18688366	18688718	.	-	.	Parent=Os09t0484300-02
Chr09	irgsp1_rep	mRNA	18688369	18694155	.	-	.	ID=Os09t0484300-03;Name=Os09t0484300-03;Locus_id=Os09g0484300;Note=Similar to Polyubiquitin-like protein.;Transcript_evidence=AK100330 (DDBJ%2C Best hit);ORF_evidence=Q2L3D3 (UniProt);GO=Biological Process: protein modification process (GO:0006464),Cellular Component: intracellular (GO:0005622),Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=HECT (IPR000569),Ubiquitin supergroup (IPR019955);NIAS_FLcDNA=J023080J01;TENOR=Os09t0484300-03;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	18694088	18694155	.	-	.	Parent=Os09t0484300-03
Chr09	irgsp1_rep	CDS	18692290	18694087	.	-	0	Parent=Os09t0484300-03
Chr09	irgsp1_rep	CDS	18690352	18690885	.	-	2	Parent=Os09t0484300-03
Chr09	irgsp1_rep	CDS	18689328	18689375	.	-	2	Parent=Os09t0484300-03
Chr09	irgsp1_rep	CDS	18688719	18688984	.	-	2	Parent=Os09t0484300-03
Chr09	irgsp1_rep	three_prime_UTR	18688369	18688718	.	-	.	Parent=Os09t0484300-03
Chr09	irgsp1_rep	mRNA	18707883	18710314	.	+	.	ID=Os09t0484800-01;Name=Os09t0484800-01;Locus_id=Os09g0484800;Note=Similar to Pirin-like protein.;Transcript_evidence=AK109548 (DDBJ%2C Best hit),AK071962 (DDBJ%2C Best hit);ORF_evidence=D7RJ70 (UniProt);InterPro=Pirin%2C N-terminal (IPR003829),Pirin%2C C-terminal (IPR008778),Cupin%2C RmlC-type (IPR011051),Pirin (IPR012093),RmlC-like jelly roll fold (IPR014710);NIAS_FLcDNA=002-120-F07,J013078C12;TENOR=Os09t0484800-01
Chr09	irgsp1_rep	five_prime_UTR	18707883	18708171	.	+	.	Parent=Os09t0484800-01
Chr09	irgsp1_rep	CDS	18708172	18708322	.	+	0	Parent=Os09t0484800-01
Chr09	irgsp1_rep	CDS	18708418	18708485	.	+	2	Parent=Os09t0484800-01
Chr09	irgsp1_rep	CDS	18709228	18709394	.	+	0	Parent=Os09t0484800-01
Chr09	irgsp1_rep	CDS	18709501	18710008	.	+	1	Parent=Os09t0484800-01
Chr09	irgsp1_rep	three_prime_UTR	18710009	18710314	.	+	.	Parent=Os09t0484800-01
Chr09	irgsp1_rep	mRNA	18715940	18718840	.	+	.	ID=Os09t0484900-01;Name=Os09t0484900-01;Locus_id=Os09g0484900;Note=Sodium/sulphate symporter family protein.;Transcript_evidence=AK105756 (DDBJ%2C Best hit),AK067836 (DDBJ%2C Best hit);ORF_evidence=NP_001148320.1 (RefSeq);GO=Biological Process: sodium ion transport (GO:0006814),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Sodium/sulphate symporter (IPR001898);NIAS_FLcDNA=001-202-D02,J013123J03;Expression=AK105756;TENOR=Os09t0484900-01;KEGG=Os09t0484900-01
Chr09	irgsp1_rep	five_prime_UTR	18715940	18716040	.	+	.	Parent=Os09t0484900-01
Chr09	irgsp1_rep	CDS	18716041	18716481	.	+	0	Parent=Os09t0484900-01
Chr09	irgsp1_rep	CDS	18716577	18717081	.	+	0	Parent=Os09t0484900-01
Chr09	irgsp1_rep	CDS	18717345	18717388	.	+	2	Parent=Os09t0484900-01
Chr09	irgsp1_rep	CDS	18717713	18717808	.	+	0	Parent=Os09t0484900-01
Chr09	irgsp1_rep	CDS	18717904	18718414	.	+	0	Parent=Os09t0484900-01
Chr09	irgsp1_rep	CDS	18718580	18718614	.	+	2	Parent=Os09t0484900-01
Chr09	irgsp1_rep	three_prime_UTR	18718615	18718840	.	+	.	Parent=Os09t0484900-01
Chr09	irgsp1_rep	mRNA	18716037	18718409	.	-	.	ID=Os09t0485050-00;Name=Os09t0485050-00;Locus_id=Os09g0485050;Note=Hypothetical protein.;Transcript_evidence=tplb0057d22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0485050-00
Chr09	irgsp1_rep	five_prime_UTR	18718245	18718409	.	-	.	Parent=Os09t0485050-00
Chr09	irgsp1_rep	CDS	18717888	18718244	.	-	0	Parent=Os09t0485050-00
Chr09	irgsp1_rep	CDS	18717712	18717800	.	-	0	Parent=Os09t0485050-00
Chr09	irgsp1_rep	CDS	18717348	18717387	.	-	1	Parent=Os09t0485050-00
Chr09	irgsp1_rep	three_prime_UTR	18717343	18717347	.	-	.	Parent=Os09t0485050-00
Chr09	irgsp1_rep	three_prime_UTR	18716567	18717077	.	-	.	Parent=Os09t0485050-00
Chr09	irgsp1_rep	three_prime_UTR	18716037	18716473	.	-	.	Parent=Os09t0485050-00
Chr09	irgsp1_rep	mRNA	18719900	18720145	.	+	.	ID=Os09t0485201-00;Name=Os09t0485201-00;Locus_id=Os09g0485201;Note=Similar to photosystem I subunit VII.;Transcript_evidence=A0A386 (UniProt);ORF_evidence=A0A386 (UniProt);GO=Biological Process: photosynthetic electron transport in photosystem I (GO:0009773),Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem I (GO:0009522),Cellular Component: thylakoid membrane (GO:0042651),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: iron-sulfur cluster binding (GO:0051536),Molecular Function: 4 iron%2C 4 sulfur cluster binding (GO:0051539);InterPro=4Fe-4S binding domain (IPR001450),Photosystem I PsaC (IPR017491),4Fe-4S ferredoxin%2C iron-sulpur binding domain (IPR017896),4Fe-4S ferredoxin%2C iron-sulphur binding%2C conserved site (IPR017900);TENOR=Os09t0485201-00
Chr09	irgsp1_rep	CDS	18719900	18720145	.	+	0	Parent=Os09t0485201-00
Chr09	irgsp1_rep	mRNA	18735050	18737064	.	+	.	ID=Os09t0485500-01;Name=Os09t0485500-01;Locus_id=Os09g0485500;Oryzabase Gene Symbol Synonym(s)=OsWIP6;Oryzabase Gene Name Synonym(s)=C2H2-type zinc-finger transcription factor OsWIP6;Note=Similar to WIP4.;Transcript_evidence=AK119776 (DDBJ%2C Best hit);ORF_evidence=A6N8R9 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087);NIAS_FLcDNA=002-172-H09;Oryzabase=11810;TENOR=Os09t0485500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	18735050	18735118	.	+	.	Parent=Os09t0485500-01
Chr09	irgsp1_rep	CDS	18735119	18735595	.	+	0	Parent=Os09t0485500-01
Chr09	irgsp1_rep	three_prime_UTR	18735596	18737064	.	+	.	Parent=Os09t0485500-01
Chr09	irgsp1_rep	mRNA	18738733	18739395	.	+	.	ID=Os09t0485600-01;Name=Os09t0485600-01;Locus_id=Os09g0485600;Note=Similar to WIP1 protein (Fragment).;Transcript_evidence=AK063705 (DDBJ%2C Best hit);ORF_evidence=A6N8R9 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087);NIAS_FLcDNA=001-119-H03;Expression=AK063705;TENOR=Os09t0485600-01;KEGG=Os09t0485600-01
Chr09	irgsp1_rep	CDS	18738733	18739197	.	+	0	Parent=Os09t0485600-01
Chr09	irgsp1_rep	three_prime_UTR	18739198	18739395	.	+	.	Parent=Os09t0485600-01
Chr09	irgsp1_rep	mRNA	18749303	18752290	.	+	.	ID=Os09t0485800-01;Name=Os09t0485800-01;Locus_id=Os09g0485800;Note=Conserved hypothetical protein.;Transcript_evidence=AK108749 (DDBJ%2C Best hit);ORF_evidence=B9G495 (UniProt);NIAS_FLcDNA=002-150-F03;Expression=AK108749;TENOR=Os09t0485800-01;KEGG=Os09t0485800-01
Chr09	irgsp1_rep	five_prime_UTR	18749303	18749338	.	+	.	Parent=Os09t0485800-01
Chr09	irgsp1_rep	CDS	18749339	18749645	.	+	0	Parent=Os09t0485800-01
Chr09	irgsp1_rep	CDS	18751897	18752126	.	+	2	Parent=Os09t0485800-01
Chr09	irgsp1_rep	three_prime_UTR	18752127	18752290	.	+	.	Parent=Os09t0485800-01
Chr09	irgsp1_rep	mRNA	18752464	18754195	.	-	.	ID=Os09t0485900-01;Name=Os09t0485900-01;Locus_id=Os09g0485900;Oryzabase Gene Name Synonym(s)=GAmRNA;Note=Similar to 60S ribosomal protein L9 (Gibberellin-regulated protein GA).;Transcript_evidence=AK064936 (DDBJ%2C Best hit);ORF_evidence=A2Z2J3 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735),Molecular Function: rRNA binding (GO:0019843);InterPro=Ribosomal protein L6 (IPR000702),Ribosomal protein L6%2C conserved site-2 (IPR002359),Ribosomal protein L6%2C alpha-beta domain (IPR020040);NIAS_FLcDNA=J013000P02;Oryzabase=17745;Expression=AK064936;TENOR=Os09t0485900-01;KEGG=Os09t0485900-01
Chr09	irgsp1_rep	five_prime_UTR	18754119	18754195	.	-	.	Parent=Os09t0485900-01
Chr09	irgsp1_rep	CDS	18753756	18754118	.	-	0	Parent=Os09t0485900-01
Chr09	irgsp1_rep	CDS	18753519	18753641	.	-	0	Parent=Os09t0485900-01
Chr09	irgsp1_rep	CDS	18752698	18752784	.	-	0	Parent=Os09t0485900-01
Chr09	irgsp1_rep	three_prime_UTR	18752464	18752697	.	-	.	Parent=Os09t0485900-01
Chr09	irgsp1_rep	mRNA	18754467	18755196	.	-	.	ID=Os09t0485950-00;Name=Os09t0485950-00;Locus_id=Os09g0485950;Note=Conserved hypothetical protein.;Transcript_evidence=AK367295 (DDBJ);ORF_evidence=F2DTS7 (UniProt);TENOR=Os09t0485950-00
Chr09	irgsp1_rep	CDS	18754561	18755196	.	-	0	Parent=Os09t0485950-00
Chr09	irgsp1_rep	three_prime_UTR	18754467	18754560	.	-	.	Parent=Os09t0485950-00
Chr09	irgsp1_rep	mRNA	18754630	18755187	.	+	.	ID=Os09t0486000-00;Name=Os09t0486000-00;Locus_id=Os09g0486000;Note=Similar to BCR/ABL-regulated protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001152691.1 (RefSeq);InterPro=PRELI/MSF1 (IPR006797);TENOR=Os09t0486000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	18754630	18755187	.	+	0	Parent=Os09t0486000-00
Chr09	irgsp1_rep	mRNA	18756680	18757431	.	+	.	ID=Os09t0486375-00;Name=Os09t0486375-00;Locus_id=Os09g0486375;Note=Conserved hypothetical protein.;Transcript_evidence=AK365329 (DDBJ);ORF_evidence=Q8S5P9 (UniProt);TENOR=Os09t0486375-00
Chr09	irgsp1_rep	five_prime_UTR	18756680	18756826	.	+	.	Parent=Os09t0486375-00
Chr09	irgsp1_rep	five_prime_UTR	18756966	18757073	.	+	.	Parent=Os09t0486375-00
Chr09	irgsp1_rep	CDS	18757074	18757277	.	+	0	Parent=Os09t0486375-00
Chr09	irgsp1_rep	three_prime_UTR	18757278	18757431	.	+	.	Parent=Os09t0486375-00
Chr09	irgsp1_rep	mRNA	18760705	18761574	.	+	.	ID=Os09t0486500-02;Name=Os09t0486500-02;Locus_id=Os09g0486500;RAP-DB Gene Symbol Synonym(s)=SAP1%2C Osi-SAP1%2C ISAP1%2C OsiSAP1%2C OSISAP1%2C OsSAP1;RAP-DB Gene Name Synonym(s)=STRESS ASSOCIATED PROTEIN GENE 1%2C rice (indica) stress associated protein gene1%2C Zinc finger A20 and AN1 domain-containing stress-associated protein 1%2C Multiple stress-responsive zinc finger protein ISAP1%2C O. sativa subspecies indica stress-associated protein 1%2C stress-associated protein 1;CGSNL Gene Symbol=SAP1;CGSNL Gene Name=STRESS ASSOCIATED PROTEIN GENE 1;Oryzabase Gene Symbol Synonym(s)=Osi-SAP1%2C ISAP1%2C OsiSAP1%2C OSISAP1%2C OsSAP1;Oryzabase Gene Name Synonym(s)=rice (indica) stress associated protein gene1%2C Zinc finger A20 and AN1 domain-containing stress-associated protein 1%2C Multiple stress-responsive zinc finger protein ISAP1%2C O. sativa subspecies indica stress-associated protein 1%2C stress-associated protein 1;Note=A20/AN1 zinc-finger protein%2C Response to multiple biotic stresses%2C Regulation of abiotic stress responses;Transcript_evidence=AK061067,AK070140,AK106128,AK119793;ORF_evidence=A3C039;GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C A20-type (IPR002653),Zinc finger%2C AN1-type (IPR000058);NIAS_FLcDNA=006-206-B12, J023042G11, 001-207-F08, 002-175-B06;Manual Curation=November 22%2C 2016;Literature_PMID=27486471,25017161;Oryzabase=6181;Expression=AK061067;TENOR=Os09t0486500-02;KEGG=Os09t0486500-02
Chr09	irgsp1_rep	five_prime_UTR	18760705	18760830	.	+	.	Parent=Os09t0486500-02
Chr09	irgsp1_rep	CDS	18760831	18761325	.	+	0	Parent=Os09t0486500-02
Chr09	irgsp1_rep	three_prime_UTR	18761326	18761574	.	+	.	Parent=Os09t0486500-02
Chr09	irgsp1_rep	mRNA	18769773	18771493	.	+	.	ID=Os09t0486700-01;Name=Os09t0486700-01;Locus_id=Os09g0486700;Note=Similar to P90 ribosomal S6 kinase.;Transcript_evidence=AK105294 (DDBJ%2C Best hit);ORF_evidence=NP_001148257.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-116-G10;Expression=AK105294;TENOR=Os09t0486700-01;KEGG=Os09t0486700-01 (EC:2.7.11.1)
Chr09	irgsp1_rep	five_prime_UTR	18769773	18769823	.	+	.	Parent=Os09t0486700-01
Chr09	irgsp1_rep	CDS	18769824	18771191	.	+	0	Parent=Os09t0486700-01
Chr09	irgsp1_rep	three_prime_UTR	18771192	18771493	.	+	.	Parent=Os09t0486700-01
Chr09	irgsp1_rep	mRNA	18770213	18771168	.	-	.	ID=Os09t0486900-00;Name=Os09t0486900-00;Locus_id=Os09g0486900;Note=Hypothetical protein.;Transcript_evidence=EU943630 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0486900-00
Chr09	irgsp1_rep	five_prime_UTR	18771168	18771168	.	-	.	Parent=Os09t0486900-00
Chr09	irgsp1_rep	CDS	18770700	18771167	.	-	0	Parent=Os09t0486900-00
Chr09	irgsp1_rep	three_prime_UTR	18770529	18770699	.	-	.	Parent=Os09t0486900-00
Chr09	irgsp1_rep	three_prime_UTR	18770213	18770432	.	-	.	Parent=Os09t0486900-00
Chr09	irgsp1_rep	mRNA	18779617	18782249	.	-	.	ID=Os09t0487100-01;Name=Os09t0487100-01;Locus_id=Os09g0487100;Note=Conserved hypothetical protein.;Transcript_evidence=AK068067 (DDBJ%2C Best hit);ORF_evidence=B8BCV4 (UniProt);NIAS_FLcDNA=J013131K03;Expression=AK068067;TENOR=Os09t0487100-01;KEGG=Os09t0487100-01
Chr09	irgsp1_rep	five_prime_UTR	18782157	18782249	.	-	.	Parent=Os09t0487100-01
Chr09	irgsp1_rep	five_prime_UTR	18781585	18782024	.	-	.	Parent=Os09t0487100-01
Chr09	irgsp1_rep	CDS	18781237	18781584	.	-	0	Parent=Os09t0487100-01
Chr09	irgsp1_rep	three_prime_UTR	18780025	18781236	.	-	.	Parent=Os09t0487100-01
Chr09	irgsp1_rep	three_prime_UTR	18779617	18779917	.	-	.	Parent=Os09t0487100-01
Chr09	irgsp1_rep	mRNA	18782991	18783715	.	+	.	ID=Os09t0487150-00;Name=Os09t0487150-00;Locus_id=Os09g0487150;Note=Hypothetical gene.;Transcript_evidence=CT832497 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os09t0487150-00;KEGG=Os09t0487150-00
Chr09	irgsp1_rep	five_prime_UTR	18782991	18783010	.	+	.	Parent=Os09t0487150-00
Chr09	irgsp1_rep	CDS	18783011	18783286	.	+	0	Parent=Os09t0487150-00
Chr09	irgsp1_rep	three_prime_UTR	18783287	18783715	.	+	.	Parent=Os09t0487150-00
Chr09	irgsp1_rep	mRNA	18783042	18788014	.	-	.	ID=Os09t0487200-01;Name=Os09t0487200-01;Locus_id=Os09g0487200;Note=Conserved hypothetical protein.;Transcript_evidence=AK070460 (DDBJ%2C Best hit);ORF_evidence=A2Z2J8 (UniProt);NIAS_FLcDNA=J023048I06;Expression=AK070460;TENOR=Os09t0487200-01;KEGG=Os09t0487200-01
Chr09	irgsp1_rep	five_prime_UTR	18787702	18788014	.	-	.	Parent=Os09t0487200-01
Chr09	irgsp1_rep	five_prime_UTR	18786274	18786308	.	-	.	Parent=Os09t0487200-01
Chr09	irgsp1_rep	CDS	18785267	18786273	.	-	0	Parent=Os09t0487200-01
Chr09	irgsp1_rep	CDS	18784884	18785178	.	-	1	Parent=Os09t0487200-01
Chr09	irgsp1_rep	CDS	18784544	18784750	.	-	0	Parent=Os09t0487200-01
Chr09	irgsp1_rep	CDS	18784288	18784461	.	-	0	Parent=Os09t0487200-01
Chr09	irgsp1_rep	CDS	18783931	18784128	.	-	0	Parent=Os09t0487200-01
Chr09	irgsp1_rep	CDS	18783727	18783840	.	-	0	Parent=Os09t0487200-01
Chr09	irgsp1_rep	CDS	18783225	18783572	.	-	0	Parent=Os09t0487200-01
Chr09	irgsp1_rep	three_prime_UTR	18783042	18783224	.	-	.	Parent=Os09t0487200-01
Chr09	irgsp1_rep	mRNA	18799382	18800056	.	-	.	ID=Os09t0487500-01;Name=Os09t0487500-01;Locus_id=Os09g0487500;Note=Conserved hypothetical protein.;Transcript_evidence=AK108131 (DDBJ%2C Best hit);ORF_evidence=A2Z2J9 (UniProt);NIAS_FLcDNA=002-139-D10;Expression=AK108131;TENOR=Os09t0487500-01;KEGG=Os09t0487500-01
Chr09	irgsp1_rep	five_prime_UTR	18799959	18800056	.	-	.	Parent=Os09t0487500-01
Chr09	irgsp1_rep	CDS	18799605	18799958	.	-	0	Parent=Os09t0487500-01
Chr09	irgsp1_rep	three_prime_UTR	18799382	18799604	.	-	.	Parent=Os09t0487500-01
Chr09	irgsp1_rep	mRNA	18801173	18803450	.	-	.	ID=Os09t0487600-01;Name=Os09t0487600-01;Locus_id=Os09g0487600;Oryzabase Gene Symbol Synonym(s)=OsPGL35%2C PGL35;Oryzabase Gene Name Synonym(s)=Polygalacturonases-Like 35%2C PG-like 35;Note=Similar to polygalacturonase.;Transcript_evidence=AK289180 (DDBJ%2C Best hit);ORF_evidence=NP_001148969.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=J100028N17;Oryzabase=22312;TENOR=Os09t0487600-01;KEGG=Os09t0487600-01
Chr09	irgsp1_rep	five_prime_UTR	18803437	18803450	.	-	.	Parent=Os09t0487600-01
Chr09	irgsp1_rep	CDS	18802886	18803436	.	-	0	Parent=Os09t0487600-01
Chr09	irgsp1_rep	CDS	18802331	18802662	.	-	1	Parent=Os09t0487600-01
Chr09	irgsp1_rep	CDS	18801486	18801976	.	-	2	Parent=Os09t0487600-01
Chr09	irgsp1_rep	three_prime_UTR	18801173	18801485	.	-	.	Parent=Os09t0487600-01
Chr09	irgsp1_rep	mRNA	18805788	18808713	.	+	.	ID=Os09t0487700-01;Name=Os09t0487700-01;Locus_id=Os09g0487700;Note=Ovarian tumour%2C otubain domain containing protein.;Transcript_evidence=AK070222 (DDBJ%2C Best hit);ORF_evidence=B6TU32 (UniProt);InterPro=Ovarian tumour%2C otubain (IPR003323);NIAS_FLcDNA=J023041O13;Expression=AK070222;TENOR=Os09t0487700-01;KEGG=Os09t0487700-01
Chr09	irgsp1_rep	five_prime_UTR	18805788	18806072	.	+	.	Parent=Os09t0487700-01
Chr09	irgsp1_rep	five_prime_UTR	18806843	18806876	.	+	.	Parent=Os09t0487700-01
Chr09	irgsp1_rep	CDS	18806877	18807366	.	+	0	Parent=Os09t0487700-01
Chr09	irgsp1_rep	CDS	18807468	18807586	.	+	2	Parent=Os09t0487700-01
Chr09	irgsp1_rep	CDS	18807725	18807765	.	+	0	Parent=Os09t0487700-01
Chr09	irgsp1_rep	CDS	18807863	18807961	.	+	1	Parent=Os09t0487700-01
Chr09	irgsp1_rep	CDS	18808406	18808577	.	+	1	Parent=Os09t0487700-01
Chr09	irgsp1_rep	three_prime_UTR	18808578	18808713	.	+	.	Parent=Os09t0487700-01
Chr09	irgsp1_rep	mRNA	18814191	18817005	.	+	.	ID=Os09t0487900-01;Name=Os09t0487900-01;Locus_id=Os09g0487900;Oryzabase Gene Symbol Synonym(s)=OsbHLH143;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 143;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=AK120902 (DDBJ%2C Best hit);ORF_evidence=NP_001151233.1 (RefSeq);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J023030N23;Oryzabase=15419;Expression=AK120902;TENOR=Os09t0487900-01;KEGG=Os09t0487900-01
Chr09	irgsp1_rep	five_prime_UTR	18814191	18814363	.	+	.	Parent=Os09t0487900-01
Chr09	irgsp1_rep	CDS	18814364	18814871	.	+	0	Parent=Os09t0487900-01
Chr09	irgsp1_rep	CDS	18814996	18815492	.	+	2	Parent=Os09t0487900-01
Chr09	irgsp1_rep	CDS	18815632	18815697	.	+	0	Parent=Os09t0487900-01
Chr09	irgsp1_rep	CDS	18815922	18815990	.	+	0	Parent=Os09t0487900-01
Chr09	irgsp1_rep	CDS	18816402	18816467	.	+	0	Parent=Os09t0487900-01
Chr09	irgsp1_rep	three_prime_UTR	18816468	18817005	.	+	.	Parent=Os09t0487900-01
Chr09	irgsp1_rep	mRNA	18825515	18826251	.	-	.	ID=Os09t0488000-01;Name=Os09t0488000-01;Locus_id=Os09g0488000;CGSNL Gene Symbol=GNA1;CGSNL Gene Name=GLUCOSAMINE-6-P ACETYLTRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=OsGNA1;Oryzabase Gene Name Synonym(s)=glucosamine-6-P acetyltransferase-1;Note=Acyl-CoA N-acyltransferase domain containing protein.;Transcript_evidence=AK063214 (DDBJ%2C Best hit);ORF_evidence=NP_001149801.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: N-acetyltransferase activity (GO:0008080);InterPro=GCN5-related N-acetyltransferase (GNAT) domain (IPR000182),Acyl-CoA N-acyltransferase (IPR016181);NIAS_FLcDNA=001-112-D10;Oryzabase=6150;Expression=AK063214;TENOR=Os09t0488000-01;KEGG=Os09t0488000-01 (EC:2.3.1.4)
Chr09	irgsp1_rep	CDS	18825754	18826251	.	-	0	Parent=Os09t0488000-01
Chr09	irgsp1_rep	three_prime_UTR	18825515	18825753	.	-	.	Parent=Os09t0488000-01
Chr09	irgsp1_rep	mRNA	18845059	18847236	.	+	.	ID=Os09t0488600-00;Name=Os09t0488600-00;Locus_id=Os09g0488600;Note=Protein kinase PKN/PRK1%2C effector domain containing protein.;Transcript_evidence=BT085255 (DDBJ);ORF_evidence=NP_001175908.1 (RefSeq);TENOR=Os09t0488600-00;KEGG=Os09t0488600-00
Chr09	irgsp1_rep	five_prime_UTR	18845059	18845065	.	+	.	Parent=Os09t0488600-00
Chr09	irgsp1_rep	CDS	18845066	18845425	.	+	0	Parent=Os09t0488600-00
Chr09	irgsp1_rep	CDS	18845747	18845959	.	+	0	Parent=Os09t0488600-00
Chr09	irgsp1_rep	CDS	18846037	18846189	.	+	0	Parent=Os09t0488600-00
Chr09	irgsp1_rep	CDS	18846404	18846523	.	+	0	Parent=Os09t0488600-00
Chr09	irgsp1_rep	CDS	18846597	18846683	.	+	0	Parent=Os09t0488600-00
Chr09	irgsp1_rep	CDS	18846777	18847214	.	+	0	Parent=Os09t0488600-00
Chr09	irgsp1_rep	three_prime_UTR	18847215	18847236	.	+	.	Parent=Os09t0488600-00
Chr09	irgsp1_rep	mRNA	18850291	18853114	.	+	.	ID=Os09t0488700-01;Name=Os09t0488700-01;Locus_id=Os09g0488700;Note=Conserved hypothetical protein.;Transcript_evidence=AK062303 (DDBJ%2C Best hit);ORF_evidence=B9G4A1 (UniProt);NIAS_FLcDNA=001-100-H11;TENOR=Os09t0488700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	18850291	18850291	.	+	.	Parent=Os09t0488700-01
Chr09	irgsp1_rep	CDS	18850292	18850376	.	+	0	Parent=Os09t0488700-01
Chr09	irgsp1_rep	CDS	18851538	18851821	.	+	2	Parent=Os09t0488700-01
Chr09	irgsp1_rep	CDS	18851989	18852216	.	+	0	Parent=Os09t0488700-01
Chr09	irgsp1_rep	CDS	18852316	18852765	.	+	0	Parent=Os09t0488700-01
Chr09	irgsp1_rep	three_prime_UTR	18852766	18853114	.	+	.	Parent=Os09t0488700-01
Chr09	irgsp1_rep	mRNA	18851606	18852581	.	-	.	ID=Os09t0488750-00;Name=Os09t0488750-00;Locus_id=Os09g0488750;Note=Hypothetical protein.;Transcript_evidence=AK361018 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0488750-00
Chr09	irgsp1_rep	five_prime_UTR	18852576	18852581	.	-	.	Parent=Os09t0488750-00
Chr09	irgsp1_rep	CDS	18852301	18852575	.	-	0	Parent=Os09t0488750-00
Chr09	irgsp1_rep	CDS	18852187	18852208	.	-	1	Parent=Os09t0488750-00
Chr09	irgsp1_rep	three_prime_UTR	18851975	18852186	.	-	.	Parent=Os09t0488750-00
Chr09	irgsp1_rep	three_prime_UTR	18851606	18851809	.	-	.	Parent=Os09t0488750-00
Chr09	irgsp1_rep	mRNA	18852951	18855646	.	-	.	ID=Os09t0488800-01;Name=Os09t0488800-01;Locus_id=Os09g0488800;Note=Retrovirus capsid%2C C-terminal domain containing protein.;Transcript_evidence=AK288102 (DDBJ%2C Best hit);ORF_evidence=NP_001063532.1 (RefSeq);NIAS_FLcDNA=J075195D14;TENOR=Os09t0488800-01;KEGG=Os09t0488800-01
Chr09	irgsp1_rep	five_prime_UTR	18855591	18855646	.	-	.	Parent=Os09t0488800-01
Chr09	irgsp1_rep	CDS	18855294	18855590	.	-	0	Parent=Os09t0488800-01
Chr09	irgsp1_rep	CDS	18853174	18854715	.	-	0	Parent=Os09t0488800-01
Chr09	irgsp1_rep	three_prime_UTR	18852951	18853173	.	-	.	Parent=Os09t0488800-01
Chr09	irgsp1_rep	mRNA	18863239	18867497	.	-	.	ID=Os09t0489200-00;Name=Os09t0489200-00;Locus_id=Os09g0489200;Oryzabase Gene Symbol Synonym(s)=JMJ712;Oryzabase Gene Name Synonym(s)=Jumonji 712;Note=Similar to transcription factor jumonji (jmjC) domain-containing protein.;Transcript_evidence=BT039063 (DDBJ);ORF_evidence=NP_566667.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Transcription factor jumonji/aspartyl beta-hydroxylase (IPR003347),Cupin%2C JmjC-type (IPR022777);Oryzabase=15216;TENOR=Os09t0489200-00;KEGG=Os09t0489200-00
Chr09	irgsp1_rep	CDS	18867030	18867497	.	-	0	Parent=Os09t0489200-00
Chr09	irgsp1_rep	CDS	18866416	18866625	.	-	0	Parent=Os09t0489200-00
Chr09	irgsp1_rep	CDS	18865317	18865448	.	-	0	Parent=Os09t0489200-00
Chr09	irgsp1_rep	CDS	18865098	18865241	.	-	0	Parent=Os09t0489200-00
Chr09	irgsp1_rep	CDS	18864330	18864422	.	-	0	Parent=Os09t0489200-00
Chr09	irgsp1_rep	CDS	18863496	18863687	.	-	0	Parent=Os09t0489200-00
Chr09	irgsp1_rep	three_prime_UTR	18863239	18863495	.	-	.	Parent=Os09t0489200-00
Chr09	irgsp1_rep	mRNA	18868479	18877573	.	-	.	ID=Os09t0489500-01;Name=Os09t0489500-01;Locus_id=Os09g0489500;RAP-DB Gene Symbol Synonym(s)=OsTGA10;RAP-DB Gene Name Synonym(s)=TGA factor 10%2C TGACGTCA cis-element-binding protein 10;CGSNL Gene Symbol=BZIP74;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 74;Oryzabase Gene Symbol Synonym(s)=OsbZIP74%2C OsTGA10%2C TGA10;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 74%2C TGA factor 10%2C TGACGTCA cis-element-binding protein 10;Note=bZIP transcription factor%2C Tapetum development;Transcript_evidence=AK100210;ORF_evidence=Q0J0P4;GO=Biological Process: transcription%2C DNA-templated (GO:0006351),Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Basic-leucine zipper domain (IPR004827),Transcription factor TGA like domain (IPR025422);NIAS_FLcDNA=J023043A12;Manual Curation=January 10%2C 2018;Literature_PMID=29158333,27208278;Oryzabase=10154;Expression=AK100210;TENOR=Os09t0489500-01;KEGG=Os09t0489500-01;Subcellular location=nucleus (GO:0005634)
Chr09	irgsp1_rep	five_prime_UTR	18877064	18877573	.	-	.	Parent=Os09t0489500-01
Chr09	irgsp1_rep	CDS	18876876	18877063	.	-	0	Parent=Os09t0489500-01
Chr09	irgsp1_rep	CDS	18875644	18875750	.	-	1	Parent=Os09t0489500-01
Chr09	irgsp1_rep	CDS	18874325	18874377	.	-	2	Parent=Os09t0489500-01
Chr09	irgsp1_rep	CDS	18873964	18874176	.	-	0	Parent=Os09t0489500-01
Chr09	irgsp1_rep	CDS	18873757	18873801	.	-	0	Parent=Os09t0489500-01
Chr09	irgsp1_rep	CDS	18873540	18873599	.	-	0	Parent=Os09t0489500-01
Chr09	irgsp1_rep	CDS	18873251	18873328	.	-	0	Parent=Os09t0489500-01
Chr09	irgsp1_rep	CDS	18872741	18873127	.	-	0	Parent=Os09t0489500-01
Chr09	irgsp1_rep	CDS	18871037	18871276	.	-	0	Parent=Os09t0489500-01
Chr09	irgsp1_rep	CDS	18868799	18868993	.	-	0	Parent=Os09t0489500-01
Chr09	irgsp1_rep	three_prime_UTR	18868479	18868798	.	-	.	Parent=Os09t0489500-01
Chr09	irgsp1_rep	mRNA	18868481	18877195	.	-	.	ID=Os09t0489500-02;Name=Os09t0489500-02;Locus_id=Os09g0489500;CGSNL Gene Symbol=BZIP74;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 74;Oryzabase Gene Symbol Synonym(s)=OsbZIP74%2C OsTGA10%2C TGA10;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 74%2C TGA factor 10%2C TGACGTCA cis-element-binding protein 10;Note=Similar to DNA binding protein.;Transcript_evidence=AK103174 (DDBJ%2C Best hit);ORF_evidence=B6TPL3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);NIAS_FLcDNA=J033121H05;Oryzabase=10154;Expression=AK103174;TENOR=Os09t0489500-02;KEGG=Os09t0489500-02
Chr09	irgsp1_rep	five_prime_UTR	18877064	18877195	.	-	.	Parent=Os09t0489500-02
Chr09	irgsp1_rep	CDS	18876876	18877063	.	-	0	Parent=Os09t0489500-02
Chr09	irgsp1_rep	CDS	18875644	18875756	.	-	1	Parent=Os09t0489500-02
Chr09	irgsp1_rep	CDS	18874325	18874377	.	-	2	Parent=Os09t0489500-02
Chr09	irgsp1_rep	CDS	18873964	18874176	.	-	0	Parent=Os09t0489500-02
Chr09	irgsp1_rep	CDS	18873757	18873801	.	-	0	Parent=Os09t0489500-02
Chr09	irgsp1_rep	CDS	18873540	18873599	.	-	0	Parent=Os09t0489500-02
Chr09	irgsp1_rep	CDS	18873251	18873328	.	-	0	Parent=Os09t0489500-02
Chr09	irgsp1_rep	CDS	18872741	18873127	.	-	0	Parent=Os09t0489500-02
Chr09	irgsp1_rep	CDS	18871037	18871276	.	-	0	Parent=Os09t0489500-02
Chr09	irgsp1_rep	CDS	18868799	18868993	.	-	0	Parent=Os09t0489500-02
Chr09	irgsp1_rep	three_prime_UTR	18868481	18868798	.	-	.	Parent=Os09t0489500-02
Chr09	irgsp1_rep	mRNA	18872652	18875476	.	+	.	ID=Os09t0489800-01;Name=Os09t0489800-01;Locus_id=Os09g0489800;Note=Hypothetical protein.;Transcript_evidence=AK119382 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-132-B05;TENOR=Os09t0489800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	18872652	18872653	.	+	.	Parent=Os09t0489800-01
Chr09	irgsp1_rep	CDS	18872654	18873142	.	+	0	Parent=Os09t0489800-01
Chr09	irgsp1_rep	three_prime_UTR	18873143	18875476	.	+	.	Parent=Os09t0489800-01
Chr09	irgsp1_rep	mRNA	18872658	18876084	.	+	.	ID=Os09t0489800-02;Name=Os09t0489800-02;Locus_id=Os09g0489800;Note=Hypothetical protein.;Transcript_evidence=AK106880 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-118-F01;TENOR=Os09t0489800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	18872658	18872659	.	+	.	Parent=Os09t0489800-02
Chr09	irgsp1_rep	CDS	18872660	18873142	.	+	0	Parent=Os09t0489800-02
Chr09	irgsp1_rep	three_prime_UTR	18873143	18873322	.	+	.	Parent=Os09t0489800-02
Chr09	irgsp1_rep	three_prime_UTR	18874005	18874118	.	+	.	Parent=Os09t0489800-02
Chr09	irgsp1_rep	three_prime_UTR	18875687	18876084	.	+	.	Parent=Os09t0489800-02
Chr09	irgsp1_rep	mRNA	18882980	18886337	.	-	.	ID=Os09t0490200-01;Name=Os09t0490200-01;Locus_id=Os09g0490200;CGSNL Gene Symbol=EIL3;CGSNL Gene Name=ETHYLENE INSENSITIVE-LIKE GENE 3;Oryzabase Gene Symbol Synonym(s)=OsEIL3;Oryzabase Gene Name Synonym(s)=EIN3-like protein 3%2C ETHYLENE INSENSITIVE3-LIKE 3%2C EIN3-LIKE 3;Note=Similar to Ethylene signal transcription factor.;Transcript_evidence=AK065979 (DDBJ%2C Best hit);ORF_evidence=C0P2W7 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Ethylene insensitive 3 (IPR006957),Ethylene insensitive 3-like protein%2C DNA-binding domain (IPR023278);NIAS_FLcDNA=J013047J08;Oryzabase=6127;Expression=AK065979;TENOR=Os09t0490200-01;KEGG=Os09t0490200-01
Chr09	irgsp1_rep	five_prime_UTR	18886144	18886337	.	-	.	Parent=Os09t0490200-01
Chr09	irgsp1_rep	five_prime_UTR	18885845	18886012	.	-	.	Parent=Os09t0490200-01
Chr09	irgsp1_rep	CDS	18884009	18885844	.	-	0	Parent=Os09t0490200-01
Chr09	irgsp1_rep	three_prime_UTR	18884004	18884008	.	-	.	Parent=Os09t0490200-01
Chr09	irgsp1_rep	three_prime_UTR	18882980	18883929	.	-	.	Parent=Os09t0490200-01
Chr09	irgsp1_rep	mRNA	18883630	18886236	.	-	.	ID=Os09t0490200-02;Name=Os09t0490200-02;Locus_id=Os09g0490200;CGSNL Gene Symbol=EIL3;CGSNL Gene Name=ETHYLENE INSENSITIVE-LIKE GENE 3;Oryzabase Gene Symbol Synonym(s)=OsEIL3;Oryzabase Gene Name Synonym(s)=EIN3-like protein 3%2C ETHYLENE INSENSITIVE3-LIKE 3%2C EIN3-LIKE 3;Note=Similar to EIL3.;Transcript_evidence=AK065473 (DDBJ%2C Best hit);ORF_evidence=C0P2W7 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Ethylene insensitive 3 (IPR006957),Ethylene insensitive 3-like protein%2C DNA-binding domain (IPR023278);NIAS_FLcDNA=J013021L24;Oryzabase=6127;Expression=AK065473;TENOR=Os09t0490200-02;KEGG=Os09t0490200-02
Chr09	irgsp1_rep	five_prime_UTR	18886144	18886236	.	-	.	Parent=Os09t0490200-02
Chr09	irgsp1_rep	five_prime_UTR	18885845	18886012	.	-	.	Parent=Os09t0490200-02
Chr09	irgsp1_rep	CDS	18884152	18885844	.	-	0	Parent=Os09t0490200-02
Chr09	irgsp1_rep	CDS	18884095	18884099	.	-	2	Parent=Os09t0490200-02
Chr09	irgsp1_rep	three_prime_UTR	18884004	18884094	.	-	.	Parent=Os09t0490200-02
Chr09	irgsp1_rep	three_prime_UTR	18883630	18883929	.	-	.	Parent=Os09t0490200-02
Chr09	irgsp1_rep	mRNA	18889955	18893764	.	-	.	ID=Os09t0490400-00;Name=Os09t0490400-00;Locus_id=Os09g0490400;CGSNL Gene Symbol=BGLU29;CGSNL Gene Name=BETA-GLUCOSIDASE 29;Oryzabase Gene Symbol Synonym(s)=Os9bglu29%2C OsBGlu29;Oryzabase Gene Name Synonym(s)=beta-glucosidase 29;Note=Beta-glucosidase 29.;Transcript_evidence=A3C053 (UniProt);ORF_evidence=A3C053 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 1%2C active site (IPR018120);Oryzabase=12102;TENOR=Os09t0490400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	18893618	18893764	.	-	0	Parent=Os09t0490400-00
Chr09	irgsp1_rep	CDS	18893455	18893479	.	-	0	Parent=Os09t0490400-00
Chr09	irgsp1_rep	CDS	18893245	18893303	.	-	2	Parent=Os09t0490400-00
Chr09	irgsp1_rep	CDS	18892664	18892739	.	-	0	Parent=Os09t0490400-00
Chr09	irgsp1_rep	CDS	18892363	18892440	.	-	2	Parent=Os09t0490400-00
Chr09	irgsp1_rep	CDS	18892150	18892237	.	-	2	Parent=Os09t0490400-00
Chr09	irgsp1_rep	CDS	18891190	18891811	.	-	1	Parent=Os09t0490400-00
Chr09	irgsp1_rep	CDS	18890959	18891061	.	-	0	Parent=Os09t0490400-00
Chr09	irgsp1_rep	CDS	18889955	18890241	.	-	2	Parent=Os09t0490400-00
Chr09	irgsp1_rep	mRNA	18889970	18892741	.	+	.	ID=Os09t0490750-00;Name=Os09t0490750-00;Locus_id=Os09g0490750;Note=Non-protein coding transcript.;Transcript_evidence=tplb0037o13 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os09t0490750-00
Chr09	irgsp1_rep	exon	18889970	18890259	.	+	.	Parent=Os09t0490750-00
Chr09	irgsp1_rep	exon	18890976	18891037	.	+	.	Parent=Os09t0490750-00
Chr09	irgsp1_rep	exon	18891167	18891810	.	+	.	Parent=Os09t0490750-00
Chr09	irgsp1_rep	exon	18892149	18892239	.	+	.	Parent=Os09t0490750-00
Chr09	irgsp1_rep	exon	18892600	18892741	.	+	.	Parent=Os09t0490750-00
Chr09	irgsp1_rep	mRNA	18905351	18908421	.	-	.	ID=Os09t0491100-01;Name=Os09t0491100-01;Locus_id=Os09g0491100;CGSNL Gene Symbol=BGLU30;CGSNL Gene Name=BETA-GLUCOSIDASE 30;Oryzabase Gene Symbol Synonym(s)=Os9bglu30%2C OsBGlu30%2C bglu 2%2C bglu2%2C BGlu2;Oryzabase Gene Name Synonym(s)=beta-glucosidase 30;Note=Similar to Beta-primeverosidase (EC 3.2.1.149).;Transcript_evidence=AK066710 (DDBJ%2C Best hit);ORF_evidence=Q0J0N4 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 1%2C active site (IPR018120);NIAS_FLcDNA=J013074A20;Oryzabase=12103;TENOR=Os09t0491100-01
Chr09	irgsp1_rep	five_prime_UTR	18908383	18908421	.	-	.	Parent=Os09t0491100-01
Chr09	irgsp1_rep	CDS	18908245	18908382	.	-	0	Parent=Os09t0491100-01
Chr09	irgsp1_rep	CDS	18908038	18908104	.	-	0	Parent=Os09t0491100-01
Chr09	irgsp1_rep	CDS	18907889	18907947	.	-	2	Parent=Os09t0491100-01
Chr09	irgsp1_rep	CDS	18907718	18907793	.	-	0	Parent=Os09t0491100-01
Chr09	irgsp1_rep	CDS	18907514	18907591	.	-	2	Parent=Os09t0491100-01
Chr09	irgsp1_rep	CDS	18907353	18907440	.	-	2	Parent=Os09t0491100-01
Chr09	irgsp1_rep	CDS	18906256	18906877	.	-	1	Parent=Os09t0491100-01
Chr09	irgsp1_rep	CDS	18906062	18906164	.	-	0	Parent=Os09t0491100-01
Chr09	irgsp1_rep	CDS	18905620	18905891	.	-	2	Parent=Os09t0491100-01
Chr09	irgsp1_rep	three_prime_UTR	18905351	18905619	.	-	.	Parent=Os09t0491100-01
Chr09	irgsp1_rep	mRNA	18905351	18907442	.	-	.	ID=Os09t0491100-02;Name=Os09t0491100-02;Locus_id=Os09g0491100;CGSNL Gene Symbol=BGLU30;CGSNL Gene Name=BETA-GLUCOSIDASE 30;Oryzabase Gene Symbol Synonym(s)=Os9bglu30%2C OsBGlu30%2C bglu 2%2C bglu2%2C BGlu2;Oryzabase Gene Name Synonym(s)=beta-glucosidase 30;Note=Similar to Beta-glucosidase isozyme 2.;Transcript_evidence=AK061340 (DDBJ%2C Best hit);ORF_evidence=Q0J0N4 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=006-303-D09;Oryzabase=12103;Expression=AK061340;TENOR=Os09t0491100-02;KEGG=Os09t0491100-02
Chr09	irgsp1_rep	five_prime_UTR	18907442	18907442	.	-	.	Parent=Os09t0491100-02
Chr09	irgsp1_rep	CDS	18907353	18907441	.	-	0	Parent=Os09t0491100-02
Chr09	irgsp1_rep	CDS	18906256	18906877	.	-	1	Parent=Os09t0491100-02
Chr09	irgsp1_rep	CDS	18906062	18906130	.	-	0	Parent=Os09t0491100-02
Chr09	irgsp1_rep	CDS	18905778	18905891	.	-	0	Parent=Os09t0491100-02
Chr09	irgsp1_rep	three_prime_UTR	18905351	18905777	.	-	.	Parent=Os09t0491100-02
Chr09	irgsp1_rep	mRNA	18905351	18908275	.	-	.	ID=Os09t0491100-03;Name=Os09t0491100-03;Locus_id=Os09g0491100;CGSNL Gene Symbol=BGLU30;CGSNL Gene Name=BETA-GLUCOSIDASE 30;Oryzabase Gene Symbol Synonym(s)=Os9bglu30%2C OsBGlu30%2C bglu 2%2C bglu2%2C BGlu2;Oryzabase Gene Name Synonym(s)=beta-glucosidase 30;Note=Similar to Beta-glucosidase 30.;Transcript_evidence=AK104707 (DDBJ%2C Best hit);ORF_evidence=Q0J0N4 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-037-D11;Oryzabase=12103;TENOR=Os09t0491100-03
Chr09	irgsp1_rep	five_prime_UTR	18908275	18908275	.	-	.	Parent=Os09t0491100-03
Chr09	irgsp1_rep	CDS	18908245	18908274	.	-	0	Parent=Os09t0491100-03
Chr09	irgsp1_rep	CDS	18908038	18908104	.	-	0	Parent=Os09t0491100-03
Chr09	irgsp1_rep	CDS	18907889	18907947	.	-	2	Parent=Os09t0491100-03
Chr09	irgsp1_rep	CDS	18907718	18907793	.	-	0	Parent=Os09t0491100-03
Chr09	irgsp1_rep	CDS	18907514	18907591	.	-	2	Parent=Os09t0491100-03
Chr09	irgsp1_rep	CDS	18907353	18907440	.	-	2	Parent=Os09t0491100-03
Chr09	irgsp1_rep	CDS	18906256	18906877	.	-	1	Parent=Os09t0491100-03
Chr09	irgsp1_rep	CDS	18906062	18906164	.	-	0	Parent=Os09t0491100-03
Chr09	irgsp1_rep	CDS	18905620	18905891	.	-	2	Parent=Os09t0491100-03
Chr09	irgsp1_rep	three_prime_UTR	18905351	18905619	.	-	.	Parent=Os09t0491100-03
Chr09	irgsp1_rep	mRNA	18905616	18908305	.	+	.	ID=Os09t0491238-00;Name=Os09t0491238-00;Locus_id=Os09g0491238;Note=Hypothetical protein.;Transcript_evidence=tplb0037o13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0491238-00
Chr09	irgsp1_rep	five_prime_UTR	18905616	18905791	.	+	.	Parent=Os09t0491238-00
Chr09	irgsp1_rep	CDS	18905792	18905874	.	+	0	Parent=Os09t0491238-00
Chr09	irgsp1_rep	CDS	18906047	18906154	.	+	1	Parent=Os09t0491238-00
Chr09	irgsp1_rep	CDS	18906244	18906319	.	+	1	Parent=Os09t0491238-00
Chr09	irgsp1_rep	three_prime_UTR	18906320	18906867	.	+	.	Parent=Os09t0491238-00
Chr09	irgsp1_rep	three_prime_UTR	18907342	18907439	.	+	.	Parent=Os09t0491238-00
Chr09	irgsp1_rep	three_prime_UTR	18907513	18907596	.	+	.	Parent=Os09t0491238-00
Chr09	irgsp1_rep	three_prime_UTR	18907725	18907827	.	+	.	Parent=Os09t0491238-00
Chr09	irgsp1_rep	three_prime_UTR	18908009	18908110	.	+	.	Parent=Os09t0491238-00
Chr09	irgsp1_rep	three_prime_UTR	18908253	18908305	.	+	.	Parent=Os09t0491238-00
Chr09	irgsp1_rep	mRNA	18918260	18921753	.	-	.	ID=Os09t0491532-01;Name=Os09t0491532-01;Locus_id=Os09g0491532;CGSNL Gene Symbol=SPL17;CGSNL Gene Name=RICE SQUAMOSA PROMOTER-BINDING-LIKE 17;Oryzabase Gene Symbol Synonym(s)=OsSPL17;Oryzabase Gene Name Synonym(s)=Squamosa promoter-binding-like protein 17;Note=Similar to Squamosa-promoter binding protein 2.;Transcript_evidence=AK063561 (DDBJ%2C Best hit);ORF_evidence=A3C057 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Transcription factor%2C SBP-box (IPR004333);NIAS_FLcDNA=001-117-F03;Oryzabase=11241;TENOR=Os09t0491532-01;KEGG=Os09t0491532-01
Chr09	irgsp1_rep	five_prime_UTR	18921657	18921753	.	-	.	Parent=Os09t0491532-01
Chr09	irgsp1_rep	CDS	18921595	18921656	.	-	0	Parent=Os09t0491532-01
Chr09	irgsp1_rep	CDS	18921298	18921384	.	-	1	Parent=Os09t0491532-01
Chr09	irgsp1_rep	CDS	18919303	18919439	.	-	1	Parent=Os09t0491532-01
Chr09	irgsp1_rep	CDS	18918534	18919219	.	-	2	Parent=Os09t0491532-01
Chr09	irgsp1_rep	three_prime_UTR	18918260	18918533	.	-	.	Parent=Os09t0491532-01
Chr09	irgsp1_rep	mRNA	18944434	18945272	.	-	.	ID=Os09t0491596-01;Name=Os09t0491596-01;Locus_id=Os09g0491596;Note=Conserved hypothetical protein.;Transcript_evidence=AK064702 (DDBJ%2C Best hit);ORF_evidence=A2Z2L6 (UniProt);NIAS_FLcDNA=002-116-H01;TENOR=Os09t0491596-01;KEGG=Os09t0491596-01
Chr09	irgsp1_rep	five_prime_UTR	18945258	18945272	.	-	.	Parent=Os09t0491596-01
Chr09	irgsp1_rep	CDS	18944715	18945257	.	-	0	Parent=Os09t0491596-01
Chr09	irgsp1_rep	three_prime_UTR	18944434	18944714	.	-	.	Parent=Os09t0491596-01
Chr09	irgsp1_rep	mRNA	18950233	18951277	.	-	.	ID=Os09t0491612-01;Name=Os09t0491612-01;Locus_id=Os09g0491612;RAP-DB Gene Symbol Synonym(s)=PGIP7%2C Ospgip7%2C pgip7%2C OsPGIP7;RAP-DB Gene Name Synonym(s)=POLYGALACTURONASE-INHIBITING PROTEIN 7%2C Polygalacturonase-inhibiting protein 7%2C polygalacturonase inhibiting protein 7;CGSNL Gene Symbol=PGIP7;CGSNL Gene Name=POLYGALACTURONASE-INHIBITING PROTEIN 7;Oryzabase Gene Symbol Synonym(s)=Ospgip7%2C pgip7%2C OsPGIP7;Oryzabase Gene Name Synonym(s)=Polygalacturonase-inhibiting protein 7%2C polygalacturonase inhibiting protein 7;Note=Leucine-rich repeat (LRR) protein%2C Inhibitor of fungal polygalacturonase%2C Defence response;Transcript_evidence=Inferred from literature;ORF_evidence=B9G4A7;GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat domain%2C L domain-like (IPR032675),Leucine-rich repeat-containing N-terminal%2C plant-type (IPR013210),Leucine-rich repeat (IPR001611);Manual Curation=April 15%2C 2016;Literature_PMID=22362377;Oryzabase=10383;TENOR=Os09t0491612-00
Chr09	irgsp1_rep	CDS	18950249	18951277	.	-	0	Parent=Os09t0491612-01
Chr09	irgsp1_rep	three_prime_UTR	18950233	18950248	.	-	.	Parent=Os09t0491612-01
Chr09	irgsp1_rep	mRNA	18952759	18952831	.	+	.	ID=Os09t0491628-00;Name=Os09t0491628-00;Locus_id=Os09g0491628;Note=Non-protein coding transcript.;Transcript_evidence=X02683 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0491628-00
Chr09	irgsp1_rep	exon	18952759	18952831	.	+	.	Parent=Os09t0491628-00
Chr09	irgsp1_rep	mRNA	18953659	18954646	.	-	.	ID=Os09t0491644-01;Name=Os09t0491644-01;Locus_id=Os09g0491644;Note=Conserved hypothetical protein.;Transcript_evidence=AK064957 (DDBJ%2C Best hit);ORF_evidence=B9G4A8 (UniProt);NIAS_FLcDNA=J013001A10;TENOR=Os09t0491644-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	18954645	18954646	.	-	.	Parent=Os09t0491644-01
Chr09	irgsp1_rep	CDS	18953886	18954644	.	-	0	Parent=Os09t0491644-01
Chr09	irgsp1_rep	three_prime_UTR	18953659	18953885	.	-	.	Parent=Os09t0491644-01
Chr09	irgsp1_rep	mRNA	18955552	18956578	.	+	.	ID=Os09t0491652-00;Name=Os09t0491652-00;Locus_id=Os09g0491652;Note=Hypothetical gene.;Transcript_evidence=EU975368 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0491652-00
Chr09	irgsp1_rep	five_prime_UTR	18955552	18955934	.	+	.	Parent=Os09t0491652-00
Chr09	irgsp1_rep	five_prime_UTR	18956070	18956169	.	+	.	Parent=Os09t0491652-00
Chr09	irgsp1_rep	CDS	18956170	18956578	.	+	0	Parent=Os09t0491652-00
Chr09	irgsp1_rep	mRNA	18955768	18956664	.	-	.	ID=Os09t0491660-01;Name=Os09t0491660-01;Locus_id=Os09g0491660;Note=Homeodomain-like containing protein.;Transcript_evidence=AK108335 (DDBJ%2C Best hit);ORF_evidence=XP_002462574.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),MYB-like (IPR017877);NIAS_FLcDNA=002-142-A05;TENOR=Os09t0491660-01
Chr09	irgsp1_rep	five_prime_UTR	18956568	18956664	.	-	.	Parent=Os09t0491660-01
Chr09	irgsp1_rep	CDS	18956167	18956567	.	-	0	Parent=Os09t0491660-01
Chr09	irgsp1_rep	CDS	18955768	18955989	.	-	1	Parent=Os09t0491660-01
Chr09	irgsp1_rep	mRNA	18957795	18959302	.	-	.	ID=Os09t0491676-01;Name=Os09t0491676-01;Locus_id=Os09g0491676;Note=Conserved hypothetical protein.;Transcript_evidence=AK062257 (DDBJ%2C Best hit);ORF_evidence=A2Z2L9 (UniProt);NIAS_FLcDNA=001-047-G09;TENOR=Os09t0491676-01;KEGG=Os09t0491676-01
Chr09	irgsp1_rep	five_prime_UTR	18959186	18959302	.	-	.	Parent=Os09t0491676-01
Chr09	irgsp1_rep	CDS	18958082	18959185	.	-	0	Parent=Os09t0491676-01
Chr09	irgsp1_rep	three_prime_UTR	18957795	18958081	.	-	.	Parent=Os09t0491676-01
Chr09	irgsp1_rep	mRNA	18957647	18959245	.	-	.	ID=Os09t0491676-02;Name=Os09t0491676-02;Locus_id=Os09g0491676;Note=Conserved hypothetical protein.;Transcript_evidence=AK064834 (DDBJ%2C Best hit);ORF_evidence=A2Z2L9 (UniProt);NIAS_FLcDNA=J013000F19;TENOR=Os09t0491676-02;KEGG=Os09t0491676-02
Chr09	irgsp1_rep	five_prime_UTR	18959186	18959245	.	-	.	Parent=Os09t0491676-02
Chr09	irgsp1_rep	CDS	18958082	18959185	.	-	0	Parent=Os09t0491676-02
Chr09	irgsp1_rep	three_prime_UTR	18957647	18958081	.	-	.	Parent=Os09t0491676-02
Chr09	irgsp1_rep	mRNA	18962153	18963967	.	-	.	ID=Os09t0491692-01;Name=Os09t0491692-01;Locus_id=Os09g0491692;Note=Lambda repressor-like%2C DNA-binding domain containing protein.;Transcript_evidence=AK111478 (DDBJ%2C Best hit);ORF_evidence=B8BD49 (UniProt);NIAS_FLcDNA=002-185-A09;TENOR=Os09t0491692-01;KEGG=Os09t0491692-01
Chr09	irgsp1_rep	five_prime_UTR	18963829	18963967	.	-	.	Parent=Os09t0491692-01
Chr09	irgsp1_rep	CDS	18963649	18963828	.	-	0	Parent=Os09t0491692-01
Chr09	irgsp1_rep	CDS	18962298	18962471	.	-	0	Parent=Os09t0491692-01
Chr09	irgsp1_rep	three_prime_UTR	18962153	18962297	.	-	.	Parent=Os09t0491692-01
Chr09	irgsp1_rep	mRNA	18964676	18968417	.	-	.	ID=Os09t0491708-01;Name=Os09t0491708-01;Locus_id=Os09g0491708;Oryzabase Gene Symbol Synonym(s)=OsAHL2%2C AHL2;Oryzabase Gene Name Synonym(s)=AT-hook motif nuclear localized protein 2;Note=Protein of unknown function DUF296 domain containing protein.;Transcript_evidence=AK101825 (DDBJ%2C Best hit);ORF_evidence=B6TI42 (UniProt);GO=Molecular Function: DNA binding (GO:0003677);InterPro=Domain of unknown function DUF296 (IPR005175),AT hook%2C DNA-binding motif (IPR017956);NIAS_FLcDNA=J033068A08;Oryzabase=14658;TENOR=Os09t0491708-01;KEGG=Os09t0491708-01
Chr09	irgsp1_rep	five_prime_UTR	18967649	18968417	.	-	.	Parent=Os09t0491708-01
Chr09	irgsp1_rep	CDS	18967150	18967648	.	-	0	Parent=Os09t0491708-01
Chr09	irgsp1_rep	CDS	18966609	18966661	.	-	2	Parent=Os09t0491708-01
Chr09	irgsp1_rep	CDS	18965997	18966128	.	-	0	Parent=Os09t0491708-01
Chr09	irgsp1_rep	CDS	18965607	18965768	.	-	0	Parent=Os09t0491708-01
Chr09	irgsp1_rep	CDS	18965011	18965244	.	-	0	Parent=Os09t0491708-01
Chr09	irgsp1_rep	three_prime_UTR	18964676	18965010	.	-	.	Parent=Os09t0491708-01
Chr09	irgsp1_rep	mRNA	18964655	18968138	.	-	.	ID=Os09t0491708-02;Name=Os09t0491708-02;Locus_id=Os09g0491708;Oryzabase Gene Symbol Synonym(s)=OsAHL2%2C AHL2;Oryzabase Gene Name Synonym(s)=AT-hook motif nuclear localized protein 2;Note=Protein of unknown function DUF296 domain containing protein.;Transcript_evidence=AK105419 (DDBJ%2C Best hit);ORF_evidence=B6TI42 (UniProt);GO=Molecular Function: DNA binding (GO:0003677);InterPro=Domain of unknown function DUF296 (IPR005175),AT hook%2C DNA-binding motif (IPR017956);NIAS_FLcDNA=001-124-A12;Oryzabase=14658;TENOR=Os09t0491708-02
Chr09	irgsp1_rep	five_prime_UTR	18967649	18968138	.	-	.	Parent=Os09t0491708-02
Chr09	irgsp1_rep	CDS	18967150	18967648	.	-	0	Parent=Os09t0491708-02
Chr09	irgsp1_rep	CDS	18966609	18966661	.	-	2	Parent=Os09t0491708-02
Chr09	irgsp1_rep	CDS	18965997	18966128	.	-	0	Parent=Os09t0491708-02
Chr09	irgsp1_rep	CDS	18965607	18965768	.	-	0	Parent=Os09t0491708-02
Chr09	irgsp1_rep	CDS	18965011	18965244	.	-	0	Parent=Os09t0491708-02
Chr09	irgsp1_rep	three_prime_UTR	18964655	18965010	.	-	.	Parent=Os09t0491708-02
Chr09	irgsp1_rep	mRNA	18978153	18983471	.	-	.	ID=Os09t0491740-01;Name=Os09t0491740-01;Locus_id=Os09g0491740;Oryzabase Gene Symbol Synonym(s)=OsPILS1%2C PILS1;Oryzabase Gene Name Synonym(s)=PIN likes 1;Note=Auxin efflux carrier domain containing protein.;Transcript_evidence=AK073345 (DDBJ%2C Best hit);ORF_evidence=XP_002890416.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Auxin efflux carrier (IPR004776);NIAS_FLcDNA=J033028L15;Oryzabase=19845;TENOR=Os09t0491740-01;KEGG=Os09t0491740-01
Chr09	irgsp1_rep	five_prime_UTR	18983187	18983471	.	-	.	Parent=Os09t0491740-01
Chr09	irgsp1_rep	five_prime_UTR	18981817	18981859	.	-	.	Parent=Os09t0491740-01
Chr09	irgsp1_rep	CDS	18981682	18981816	.	-	0	Parent=Os09t0491740-01
Chr09	irgsp1_rep	CDS	18981495	18981574	.	-	0	Parent=Os09t0491740-01
Chr09	irgsp1_rep	CDS	18981289	18981413	.	-	1	Parent=Os09t0491740-01
Chr09	irgsp1_rep	CDS	18980292	18980413	.	-	2	Parent=Os09t0491740-01
Chr09	irgsp1_rep	CDS	18979948	18980166	.	-	0	Parent=Os09t0491740-01
Chr09	irgsp1_rep	CDS	18979742	18979834	.	-	0	Parent=Os09t0491740-01
Chr09	irgsp1_rep	CDS	18979569	18979669	.	-	0	Parent=Os09t0491740-01
Chr09	irgsp1_rep	CDS	18979359	18979411	.	-	1	Parent=Os09t0491740-01
Chr09	irgsp1_rep	CDS	18979030	18979241	.	-	2	Parent=Os09t0491740-01
Chr09	irgsp1_rep	three_prime_UTR	18978153	18979029	.	-	.	Parent=Os09t0491740-01
Chr09	irgsp1_rep	mRNA	18985507	18987182	.	+	.	ID=Os09t0491756-01;Name=Os09t0491756-01;Locus_id=Os09g0491756;CGSNL Gene Symbol=C3H60;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 60;Oryzabase Gene Symbol Synonym(s)=OsC3H60%2C U2AF35a%2C U2AF35A%2C OsU2AF35a;Oryzabase Gene Name Synonym(s)=Splicing factor U2af small subunit A%2C U2 snRNP auxiliary factor small subunit A%2C U2 auxiliary factor 35 kDa subunit A%2C Zinc finger CCCH domain-containing protein 60%2C "U2 snRNP auxiliary factor%2C small subunit"%2C U2 small nuclear ribonucleoprotein auxiliary factor small subunit A%2C U2 Small Nuclear Ribonucleoprotein Auxiliary Factor U2AF Subunit 35a;Note=U2 snRNP auxiliary factor%2C small subunit.;Transcript_evidence=AK099481 (DDBJ%2C Best hit);ORF_evidence=Q9ZQW8-2 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA recognition motif domain (IPR000504),Zinc finger%2C CCCH-type (IPR000571),RNA recognition motif domain%2C eukaryote (IPR003954),U2 auxiliary factor small subunit (IPR009145),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013025G09;Oryzabase=8627;TENOR=Os09t0491756-01;KEGG=Os09t0491756-01
Chr09	irgsp1_rep	five_prime_UTR	18985507	18985579	.	+	.	Parent=Os09t0491756-01
Chr09	irgsp1_rep	five_prime_UTR	18985756	18986115	.	+	.	Parent=Os09t0491756-01
Chr09	irgsp1_rep	CDS	18986116	18986988	.	+	0	Parent=Os09t0491756-01
Chr09	irgsp1_rep	three_prime_UTR	18986989	18987182	.	+	.	Parent=Os09t0491756-01
Chr09	irgsp1_rep	mRNA	18985894	18987150	.	+	.	ID=Os09t0491756-02;Name=Os09t0491756-02;Locus_id=Os09g0491756;CGSNL Gene Symbol=C3H60;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 60;Oryzabase Gene Symbol Synonym(s)=OsC3H60%2C U2AF35a%2C U2AF35A%2C OsU2AF35a;Oryzabase Gene Name Synonym(s)=Splicing factor U2af small subunit A%2C U2 snRNP auxiliary factor small subunit A%2C U2 auxiliary factor 35 kDa subunit A%2C Zinc finger CCCH domain-containing protein 60%2C "U2 snRNP auxiliary factor%2C small subunit"%2C U2 small nuclear ribonucleoprotein auxiliary factor small subunit A%2C U2 Small Nuclear Ribonucleoprotein Auxiliary Factor U2AF Subunit 35a;Note=U2 snRNP auxiliary factor%2C small subunit.;Transcript_evidence=AK062560 (DDBJ%2C Best hit);ORF_evidence=Q9ZQW8-2 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA recognition motif domain (IPR000504),Zinc finger%2C CCCH-type (IPR000571),RNA recognition motif domain%2C eukaryote (IPR003954),U2 auxiliary factor small subunit (IPR009145),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-044-E06;Oryzabase=8627;TENOR=Os09t0491756-02;KEGG=Os09t0491756-02
Chr09	irgsp1_rep	five_prime_UTR	18985894	18986115	.	+	.	Parent=Os09t0491756-02
Chr09	irgsp1_rep	CDS	18986116	18986988	.	+	0	Parent=Os09t0491756-02
Chr09	irgsp1_rep	three_prime_UTR	18986989	18987150	.	+	.	Parent=Os09t0491756-02
Chr09	irgsp1_rep	mRNA	18987999	18991156	.	-	.	ID=Os09t0491772-01;Name=Os09t0491772-01;Locus_id=Os09g0491772;CGSNL Gene Symbol=HSP58.7;CGSNL Gene Name=58.7 KDA CLASS I HEAT SHOCK PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsHsp58.7%2C OsHSP58.7%2C OsISC25%2C ISC25;Oryzabase Gene Name Synonym(s)=58.7 kDa heat shock protein%2C 58.7-kD heat shock protein%2C Iron-sulfur cluster protein 25%2C heat shock protein 70;Note=Similar to Heat shock protein 70 (Hsc70-5).;Transcript_evidence=AK069787 (DDBJ%2C Best hit);ORF_evidence=NP_001152601.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: ATP binding (GO:0005524),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein Hsp70 (IPR001023),Chaperone DnaK (IPR012725),Heat shock protein 70 (IPR013126),Heat shock protein 70%2C conserved site (IPR018181);NIAS_FLcDNA=J023030H18;Oryzabase=11895;TENOR=Os09t0491772-01;KEGG=Os09t0491772-01
Chr09	irgsp1_rep	five_prime_UTR	18991040	18991156	.	-	.	Parent=Os09t0491772-01
Chr09	irgsp1_rep	CDS	18990965	18991039	.	-	0	Parent=Os09t0491772-01
Chr09	irgsp1_rep	CDS	18990754	18990824	.	-	0	Parent=Os09t0491772-01
Chr09	irgsp1_rep	CDS	18990589	18990667	.	-	1	Parent=Os09t0491772-01
Chr09	irgsp1_rep	CDS	18989576	18990142	.	-	0	Parent=Os09t0491772-01
Chr09	irgsp1_rep	CDS	18988189	18989451	.	-	0	Parent=Os09t0491772-01
Chr09	irgsp1_rep	three_prime_UTR	18987999	18988188	.	-	.	Parent=Os09t0491772-01
Chr09	irgsp1_rep	mRNA	18988237	18990648	.	+	.	ID=Os09t0491780-00;Name=Os09t0491780-00;Locus_id=Os09g0491780;Note=Hypothetical protein.;Transcript_evidence=tplb0023b01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0491780-00
Chr09	irgsp1_rep	five_prime_UTR	18988237	18989101	.	+	.	Parent=Os09t0491780-00
Chr09	irgsp1_rep	CDS	18989102	18989389	.	+	0	Parent=Os09t0491780-00
Chr09	irgsp1_rep	three_prime_UTR	18989390	18989440	.	+	.	Parent=Os09t0491780-00
Chr09	irgsp1_rep	three_prime_UTR	18989564	18990138	.	+	.	Parent=Os09t0491780-00
Chr09	irgsp1_rep	three_prime_UTR	18990582	18990648	.	+	.	Parent=Os09t0491780-00
Chr09	irgsp1_rep	mRNA	18994543	18998420	.	-	.	ID=Os09t0491788-01;Name=Os09t0491788-01;Locus_id=Os09g0491788;Oryzabase Gene Symbol Synonym(s)=OsCCR15%2C CCR15;Oryzabase Gene Name Synonym(s)=Dihydroflavonol-4-reductase%2C Cinnamoyl-CoA reductase 15;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK073442 (DDBJ%2C Best hit);ORF_evidence=NP_001148612.1 (RefSeq);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033044G18;Oryzabase=20251;TENOR=Os09t0491788-01;KEGG=Os09t0491788-01
Chr09	irgsp1_rep	five_prime_UTR	18998365	18998420	.	-	.	Parent=Os09t0491788-01
Chr09	irgsp1_rep	CDS	18998235	18998364	.	-	0	Parent=Os09t0491788-01
Chr09	irgsp1_rep	CDS	18997967	18998136	.	-	2	Parent=Os09t0491788-01
Chr09	irgsp1_rep	CDS	18997698	18997883	.	-	0	Parent=Os09t0491788-01
Chr09	irgsp1_rep	CDS	18997257	18997422	.	-	0	Parent=Os09t0491788-01
Chr09	irgsp1_rep	CDS	18995099	18995288	.	-	2	Parent=Os09t0491788-01
Chr09	irgsp1_rep	CDS	18994796	18994985	.	-	1	Parent=Os09t0491788-01
Chr09	irgsp1_rep	three_prime_UTR	18994543	18994795	.	-	.	Parent=Os09t0491788-01
Chr09	irgsp1_rep	mRNA	18960838	18961234	.	+	.	ID=Os09t0491789-00;Name=Os09t0491789-00;Locus_id=Os09g0491789;Note=Hypothetical protein.;Transcript_evidence=AK372466 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0491789-00
Chr09	irgsp1_rep	CDS	18960838	18961234	.	+	0	Parent=Os09t0491789-00
Chr09	irgsp1_rep	mRNA	19011766	19014197	.	-	.	ID=Os09t0491820-01;Name=Os09t0491820-01;Locus_id=Os09g0491820;CGSNL Gene Symbol=CCR16;CGSNL Gene Name=CINNAMOYL-COA REDUCTASE 16;Oryzabase Gene Symbol Synonym(s)=OsCCR16;Oryzabase Gene Name Synonym(s)=Cinnamoyl-CoA reductase 16;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK062138 (DDBJ%2C Best hit);ORF_evidence=NP_001148612.1 (RefSeq);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-045-F11;Oryzabase=22246;TENOR=Os09t0491820-01;KEGG=Os09t0491820-01
Chr09	irgsp1_rep	five_prime_UTR	19014105	19014197	.	-	.	Parent=Os09t0491820-01
Chr09	irgsp1_rep	CDS	19013972	19014104	.	-	0	Parent=Os09t0491820-01
Chr09	irgsp1_rep	CDS	19013693	19013862	.	-	2	Parent=Os09t0491820-01
Chr09	irgsp1_rep	CDS	19013119	19013307	.	-	0	Parent=Os09t0491820-01
Chr09	irgsp1_rep	CDS	19012821	19012983	.	-	0	Parent=Os09t0491820-01
Chr09	irgsp1_rep	CDS	19012424	19012613	.	-	2	Parent=Os09t0491820-01
Chr09	irgsp1_rep	CDS	19011896	19012097	.	-	1	Parent=Os09t0491820-01
Chr09	irgsp1_rep	three_prime_UTR	19011766	19011895	.	-	.	Parent=Os09t0491820-01
Chr09	irgsp1_rep	mRNA	19011720	19014197	.	-	.	ID=Os09t0491820-02;Name=Os09t0491820-02;Locus_id=Os09g0491820;CGSNL Gene Symbol=CCR16;CGSNL Gene Name=CINNAMOYL-COA REDUCTASE 16;Oryzabase Gene Symbol Synonym(s)=OsCCR16;Oryzabase Gene Name Synonym(s)=Cinnamoyl-CoA reductase 16;Note=Similar to dihydroflavonol-4-reductase.;Transcript_evidence=AK068648 (DDBJ%2C Best hit);ORF_evidence=NP_001148612.1 (RefSeq);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013159B10;Oryzabase=22246;TENOR=Os09t0491820-02;KEGG=Os09t0491820-02
Chr09	irgsp1_rep	five_prime_UTR	19014105	19014197	.	-	.	Parent=Os09t0491820-02
Chr09	irgsp1_rep	CDS	19013972	19014104	.	-	0	Parent=Os09t0491820-02
Chr09	irgsp1_rep	CDS	19013693	19013862	.	-	2	Parent=Os09t0491820-02
Chr09	irgsp1_rep	CDS	19013098	19013307	.	-	0	Parent=Os09t0491820-02
Chr09	irgsp1_rep	three_prime_UTR	19012821	19013097	.	-	.	Parent=Os09t0491820-02
Chr09	irgsp1_rep	three_prime_UTR	19012424	19012613	.	-	.	Parent=Os09t0491820-02
Chr09	irgsp1_rep	three_prime_UTR	19011720	19012097	.	-	.	Parent=Os09t0491820-02
Chr09	irgsp1_rep	mRNA	19003187	19004492	.	-	.	ID=Os09t0491822-00;Name=Os09t0491822-00;Locus_id=Os09g0491822;CGSNL Gene Symbol=CCR32;CGSNL Gene Name=CINNAMOYL-COA REDUCTASE 32;Oryzabase Gene Symbol Synonym(s)=OsCCR32;Oryzabase Gene Name Synonym(s)=Cinnamoyl-CoA reductase 32;Note=NAD-dependent epimerase/dehydratase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8BD21 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);Oryzabase=22257;TENOR=Os09t0491822-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	19004313	19004492	.	-	0	Parent=Os09t0491822-00
Chr09	irgsp1_rep	CDS	19003788	19003954	.	-	0	Parent=Os09t0491822-00
Chr09	irgsp1_rep	CDS	19003504	19003710	.	-	1	Parent=Os09t0491822-00
Chr09	irgsp1_rep	CDS	19003187	19003370	.	-	1	Parent=Os09t0491822-00
Chr09	irgsp1_rep	mRNA	19020438	19024327	.	-	.	ID=Os09t0491852-01;Name=Os09t0491852-01;Locus_id=Os09g0491852;Oryzabase Gene Symbol Synonym(s)=CCR1%2C OsCCR1%2C OsCCR14%2C CCR14;Oryzabase Gene Name Synonym(s)=Cinnamoyl-CoA Reductase 1%2C CCR-like 1%2C Cinnamoyl-CoA reductase 14;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK062287 (DDBJ%2C Best hit);ORF_evidence=NP_001148612.1 (RefSeq);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-100-E03;Oryzabase=20446;TENOR=Os09t0491852-01;KEGG=Os09t0491852-01 (EC:1.1.1.170)
Chr09	irgsp1_rep	five_prime_UTR	19024281	19024327	.	-	.	Parent=Os09t0491852-01
Chr09	irgsp1_rep	CDS	19024127	19024280	.	-	0	Parent=Os09t0491852-01
Chr09	irgsp1_rep	CDS	19022663	19022832	.	-	2	Parent=Os09t0491852-01
Chr09	irgsp1_rep	CDS	19022375	19022560	.	-	0	Parent=Os09t0491852-01
Chr09	irgsp1_rep	CDS	19021728	19021893	.	-	0	Parent=Os09t0491852-01
Chr09	irgsp1_rep	CDS	19020934	19021129	.	-	2	Parent=Os09t0491852-01
Chr09	irgsp1_rep	CDS	19020619	19020790	.	-	1	Parent=Os09t0491852-01
Chr09	irgsp1_rep	three_prime_UTR	19020438	19020618	.	-	.	Parent=Os09t0491852-01
Chr09	irgsp1_rep	mRNA	19028208	19031331	.	-	.	ID=Os09t0491868-00;Name=Os09t0491868-00;Locus_id=Os09g0491868;CGSNL Gene Symbol=CCR34;CGSNL Gene Name=CINNAMOYL-COA REDUCTASE 34;Oryzabase Gene Symbol Synonym(s)=OsCCR34;Oryzabase Gene Name Synonym(s)=Cinnamoyl-CoA reductase 34;Note=Similar to dihydroflavonol-4-reductase.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001148612.1 (RefSeq);Oryzabase=22260;TENOR=Os09t0491868-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	19031254	19031331	.	-	0	Parent=Os09t0491868-00
Chr09	irgsp1_rep	CDS	19029159	19029334	.	-	0	Parent=Os09t0491868-00
Chr09	irgsp1_rep	CDS	19028698	19028868	.	-	1	Parent=Os09t0491868-00
Chr09	irgsp1_rep	CDS	19028565	19028623	.	-	1	Parent=Os09t0491868-00
Chr09	irgsp1_rep	CDS	19028208	19028266	.	-	2	Parent=Os09t0491868-00
Chr09	irgsp1_rep	mRNA	19074060	19078617	.	+	.	ID=Os09t0492700-01;Name=Os09t0492700-01;Locus_id=Os09g0492700;Oryzabase Gene Symbol Synonym(s)=HMGR II%2C Hmg2%2C HMGR2%2C HMGR 2%2C OsHMGR2%2C HMGR1%2C OsHMGR1;Oryzabase Gene Name Synonym(s)=3-hydroxy-3-methylglutaryl coenzyme A reductase II%2C 3-hydroxy-3-methylglutaryl-CoA reductase 2;Note=Similar to 3-hydroxy-3-methylglutaryl coenzyme A reductase (EC 1.1.1.34) (Fragment).;Transcript_evidence=AK101104 (DDBJ%2C Best hit);ORF_evidence=Q7DMK0 (UniProt);GO=Biological Process: isoprenoid biosynthetic process (GO:0008299),Biological Process: coenzyme A metabolic process (GO:0015936),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: integral to membrane (GO:0016021),Molecular Function: hydroxymethylglutaryl-CoA reductase (NADPH) activity (GO:0004420),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: NADP binding (GO:0050661),Molecular Function: coenzyme binding (GO:0050662);InterPro=Hydroxymethylglutaryl-CoA reductase%2C class I/II (IPR002202),Hydroxymethylglutaryl-CoA reductase%2C eukaryotic/arcaheal type (IPR004554),Hydroxymethylglutaryl-CoA reductase%2C class I/II%2C NAD/NADP-binding (IPR009023),Hydroxymethylglutaryl-CoA reductase%2C class I/II%2C substrate-binding (IPR009029),Hydroxymethylglutaryl-CoA reductase%2C class I/II%2C catalytic domain (IPR023074),Hydroxymethylglutaryl-CoA reductase%2C class I/II%2C conserved site (IPR023076),Hydroxymethylglutaryl-CoA reductase%2C N-terminal (IPR023282);NIAS_FLcDNA=J033025C16;Oryzabase=15789;Expression=AK101104;TENOR=Os09t0492700-01;KEGG=Os09t0492700-01 (EC:1.1.1.34)
Chr09	irgsp1_rep	five_prime_UTR	19074060	19074153	.	+	.	Parent=Os09t0492700-01
Chr09	irgsp1_rep	CDS	19074154	19075112	.	+	0	Parent=Os09t0492700-01
Chr09	irgsp1_rep	CDS	19075368	19075549	.	+	1	Parent=Os09t0492700-01
Chr09	irgsp1_rep	CDS	19076567	19076913	.	+	2	Parent=Os09t0492700-01
Chr09	irgsp1_rep	CDS	19077781	19078023	.	+	0	Parent=Os09t0492700-01
Chr09	irgsp1_rep	three_prime_UTR	19078024	19078617	.	+	.	Parent=Os09t0492700-01
Chr09	irgsp1_rep	mRNA	19076649	19078170	.	+	.	ID=Os09t0492700-02;Name=Os09t0492700-02;Locus_id=Os09g0492700;Oryzabase Gene Symbol Synonym(s)=HMGR II%2C Hmg2%2C HMGR2%2C HMGR 2%2C OsHMGR2%2C HMGR1%2C OsHMGR1;Oryzabase Gene Name Synonym(s)=3-hydroxy-3-methylglutaryl coenzyme A reductase II%2C 3-hydroxy-3-methylglutaryl-CoA reductase 2;Note=Similar to 3-hydroxy-3-methylglutaryl%3DCoA reductase.;Transcript_evidence=AK063890 (DDBJ%2C Best hit);ORF_evidence=Q7DMK0 (UniProt);GO=Biological Process: coenzyme A metabolic process (GO:0015936),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: hydroxymethylglutaryl-CoA reductase (NADPH) activity (GO:0004420),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: coenzyme binding (GO:0050662);InterPro=Hydroxymethylglutaryl-CoA reductase%2C class I/II (IPR002202),Hydroxymethylglutaryl-CoA reductase%2C class I/II%2C substrate-binding (IPR009029),Hydroxymethylglutaryl-CoA reductase%2C class I/II%2C catalytic domain (IPR023074),Hydroxymethylglutaryl-CoA reductase%2C class I/II%2C conserved site (IPR023076);NIAS_FLcDNA=001-122-G05;Oryzabase=15789;Expression=AK063890;TENOR=Os09t0492700-02;KEGG=Os09t0492700-02 (EC:1.1.1.34)
Chr09	irgsp1_rep	five_prime_UTR	19076649	19076649	.	+	.	Parent=Os09t0492700-02
Chr09	irgsp1_rep	CDS	19076650	19076913	.	+	0	Parent=Os09t0492700-02
Chr09	irgsp1_rep	CDS	19077781	19078023	.	+	0	Parent=Os09t0492700-02
Chr09	irgsp1_rep	three_prime_UTR	19078024	19078170	.	+	.	Parent=Os09t0492700-02
Chr09	irgsp1_rep	mRNA	19076575	19078040	.	-	.	ID=Os09t0492733-00;Name=Os09t0492733-00;Locus_id=Os09g0492733;Note=Non-protein coding transcript.;Transcript_evidence=BT019297 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0492733-00
Chr09	irgsp1_rep	exon	19077784	19078040	.	-	.	Parent=Os09t0492733-00
Chr09	irgsp1_rep	exon	19076575	19076916	.	-	.	Parent=Os09t0492733-00
Chr09	irgsp1_rep	mRNA	19082709	19084568	.	-	.	ID=Os09t0492800-00;Name=Os09t0492800-00;Locus_id=Os09g0492800;Note=Hypothetical conserved gene.;Transcript_evidence=EU946863 (DDBJ);ORF_evidence=B8BD26 (UniProt);InterPro=Zinc finger%2C PHD-type%2C conserved site (IPR019786);TENOR=Os09t0492800-00;KEGG=Os09t0492800-00
Chr09	irgsp1_rep	CDS	19084196	19084568	.	-	0	Parent=Os09t0492800-00
Chr09	irgsp1_rep	CDS	19082709	19083238	.	-	2	Parent=Os09t0492800-00
Chr09	irgsp1_rep	mRNA	19088601	19089248	.	+	.	ID=Os09t0492900-00;Name=Os09t0492900-00;Locus_id=Os09g0492900;Note=Conserved hypothetical protein.;Transcript_evidence=AK252872 (DDBJ);ORF_evidence=B8BD27 (UniProt);TENOR=Os09t0492900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	19088601	19089152	.	+	0	Parent=Os09t0492900-00
Chr09	irgsp1_rep	three_prime_UTR	19089153	19089248	.	+	.	Parent=Os09t0492900-00
Chr09	irgsp1_rep	mRNA	19093322	19094165	.	+	.	ID=Os09t0493000-01;Name=Os09t0493000-01;Locus_id=Os09g0493000;Note=Conserved hypothetical protein.;Transcript_evidence=AK107737 (DDBJ%2C Best hit);ORF_evidence=A2Z2N5 (UniProt);NIAS_FLcDNA=002-132-G04;Expression=AK107737;TENOR=Os09t0493000-01;KEGG=Os09t0493000-01
Chr09	irgsp1_rep	five_prime_UTR	19093322	19093404	.	+	.	Parent=Os09t0493000-01
Chr09	irgsp1_rep	CDS	19093405	19094010	.	+	0	Parent=Os09t0493000-01
Chr09	irgsp1_rep	three_prime_UTR	19094011	19094165	.	+	.	Parent=Os09t0493000-01
Chr09	irgsp1_rep	mRNA	19104045	19108518	.	-	.	ID=Os09t0493200-00;Name=Os09t0493200-00;Locus_id=Os09g0493200;Note=Hypothetical protein.;Transcript_evidence=tplb0034k16 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0493200-00
Chr09	irgsp1_rep	five_prime_UTR	19108234	19108518	.	-	.	Parent=Os09t0493200-00
Chr09	irgsp1_rep	CDS	19108184	19108233	.	-	0	Parent=Os09t0493200-00
Chr09	irgsp1_rep	CDS	19107784	19107934	.	-	1	Parent=Os09t0493200-00
Chr09	irgsp1_rep	CDS	19107480	19107602	.	-	0	Parent=Os09t0493200-00
Chr09	irgsp1_rep	three_prime_UTR	19107474	19107479	.	-	.	Parent=Os09t0493200-00
Chr09	irgsp1_rep	three_prime_UTR	19107177	19107287	.	-	.	Parent=Os09t0493200-00
Chr09	irgsp1_rep	three_prime_UTR	19106639	19107055	.	-	.	Parent=Os09t0493200-00
Chr09	irgsp1_rep	three_prime_UTR	19106433	19106511	.	-	.	Parent=Os09t0493200-00
Chr09	irgsp1_rep	three_prime_UTR	19106202	19106336	.	-	.	Parent=Os09t0493200-00
Chr09	irgsp1_rep	three_prime_UTR	19105801	19105915	.	-	.	Parent=Os09t0493200-00
Chr09	irgsp1_rep	three_prime_UTR	19105630	19105674	.	-	.	Parent=Os09t0493200-00
Chr09	irgsp1_rep	three_prime_UTR	19104045	19104954	.	-	.	Parent=Os09t0493200-00
Chr09	irgsp1_rep	mRNA	19104092	19108716	.	+	.	ID=Os09t0493400-01;Name=Os09t0493400-01;Locus_id=Os09g0493400;Note=Domain of unknown function DUF547 domain containing protein.;Transcript_evidence=AK102021 (DDBJ%2C Best hit);ORF_evidence=B9G4C3 (UniProt);InterPro=Domain of unknown function DUF547 (IPR006869);NIAS_FLcDNA=J033080J10;TENOR=Os09t0493400-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	19104092	19104640	.	+	.	Parent=Os09t0493400-01
Chr09	irgsp1_rep	five_prime_UTR	19104800	19104840	.	+	.	Parent=Os09t0493400-01
Chr09	irgsp1_rep	CDS	19104841	19104947	.	+	0	Parent=Os09t0493400-01
Chr09	irgsp1_rep	CDS	19105616	19105676	.	+	1	Parent=Os09t0493400-01
Chr09	irgsp1_rep	CDS	19105810	19105923	.	+	0	Parent=Os09t0493400-01
Chr09	irgsp1_rep	CDS	19106207	19106338	.	+	0	Parent=Os09t0493400-01
Chr09	irgsp1_rep	CDS	19106435	19106539	.	+	0	Parent=Os09t0493400-01
Chr09	irgsp1_rep	CDS	19106664	19107058	.	+	0	Parent=Os09t0493400-01
Chr09	irgsp1_rep	CDS	19107180	19107279	.	+	1	Parent=Os09t0493400-01
Chr09	irgsp1_rep	CDS	19107383	19107442	.	+	0	Parent=Os09t0493400-01
Chr09	irgsp1_rep	CDS	19107524	19107610	.	+	0	Parent=Os09t0493400-01
Chr09	irgsp1_rep	CDS	19107795	19107923	.	+	0	Parent=Os09t0493400-01
Chr09	irgsp1_rep	CDS	19108172	19108471	.	+	0	Parent=Os09t0493400-01
Chr09	irgsp1_rep	three_prime_UTR	19108472	19108716	.	+	.	Parent=Os09t0493400-01
Chr09	irgsp1_rep	mRNA	19116973	19119203	.	-	.	ID=Os09t0493500-01;Name=Os09t0493500-01;Locus_id=Os09g0493500;Oryzabase Gene Symbol Synonym(s)=OsTKPR1%2C TKPR1%2C OsDFR2%2C DFR2%2C OS-DFR2%2C OsDFR2A%2C DFR2A;Oryzabase Gene Name Synonym(s)=tetraketide aplha-pyrone reductase 1%2C Dihydroflavonol-4-reductase 2;Note=Similar to H0404F02.2 protein.;Transcript_evidence=AK120576 (DDBJ%2C Best hit);ORF_evidence=Q01KJ5 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);InterPro=Ubiquitin fusion degradation protein UFD1 (IPR004854);NIAS_FLcDNA=J013135C24;Oryzabase=13163;Expression=AK120576;TENOR=Os09t0493500-01;KEGG=Os09t0493500-01
Chr09	irgsp1_rep	five_prime_UTR	19118018	19119203	.	-	.	Parent=Os09t0493500-01
Chr09	irgsp1_rep	CDS	19117025	19118017	.	-	0	Parent=Os09t0493500-01
Chr09	irgsp1_rep	three_prime_UTR	19116973	19117024	.	-	.	Parent=Os09t0493500-01
Chr09	irgsp1_rep	mRNA	19114779	19118202	.	-	.	ID=Os09t0493500-02;Name=Os09t0493500-02;Locus_id=Os09g0493500;RAP-DB Gene Symbol Synonym(s)=OsTKPR1%2C OsDFR2;RAP-DB Gene Name Synonym(s)=tetraketide aplha-pyrone reductase 1%2C Dihydroflavonol-4-reductase 2;Oryzabase Gene Symbol Synonym(s)=OsTKPR1%2C TKPR1%2C OsDFR2%2C DFR2%2C OS-DFR2%2C OsDFR2A%2C DFR2A;Oryzabase Gene Name Synonym(s)=tetraketide aplha-pyrone reductase 1%2C Dihydroflavonol-4-reductase 2;Note=Tetraketide aplha-pyrone reductase%2C Anther cuticle development%2C Pollen wall formation;Transcript_evidence=AK099770;ORF_evidence=Q0J0M1;GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD(P)-binding domain superfamily (IPR036291),NAD-dependent epimerase/dehydratase (IPR001509);NIAS_FLcDNA=J013095D01;Manual Curation=March 28%2C 2019;Literature_PMID=30885140;Oryzabase=13163;Expression=AK099770;TENOR=Os09t0493500-02;Subcellular location=endoplasmic reticulum (GO:0005783)
Chr09	irgsp1_rep	five_prime_UTR	19116680	19118202	.	-	.	Parent=Os09t0493500-02
Chr09	irgsp1_rep	CDS	19116451	19116679	.	-	0	Parent=Os09t0493500-02
Chr09	irgsp1_rep	CDS	19116174	19116347	.	-	2	Parent=Os09t0493500-02
Chr09	irgsp1_rep	CDS	19115872	19116062	.	-	2	Parent=Os09t0493500-02
Chr09	irgsp1_rep	CDS	19115613	19115775	.	-	0	Parent=Os09t0493500-02
Chr09	irgsp1_rep	CDS	19115263	19115455	.	-	2	Parent=Os09t0493500-02
Chr09	irgsp1_rep	CDS	19114990	19115140	.	-	1	Parent=Os09t0493500-02
Chr09	irgsp1_rep	three_prime_UTR	19114779	19114989	.	-	.	Parent=Os09t0493500-02
Chr09	irgsp1_rep	mRNA	19119353	19121206	.	-	.	ID=Os09t0493600-01;Name=Os09t0493600-01;Locus_id=Os09g0493600;Note=Similar to IojAP protein-like (Expressed protein).;Transcript_evidence=AK065737 (DDBJ%2C Best hit);ORF_evidence=NP_001105495.1 (RefSeq);InterPro=Ribosome-associated%2C Iojap-like (IPR004394);NIAS_FLcDNA=J013036E07;Expression=AK065737;TENOR=Os09t0493600-01;KEGG=Os09t0493600-01
Chr09	irgsp1_rep	five_prime_UTR	19121123	19121206	.	-	.	Parent=Os09t0493600-01
Chr09	irgsp1_rep	CDS	19120913	19121122	.	-	0	Parent=Os09t0493600-01
Chr09	irgsp1_rep	CDS	19120689	19120815	.	-	0	Parent=Os09t0493600-01
Chr09	irgsp1_rep	CDS	19120226	19120364	.	-	2	Parent=Os09t0493600-01
Chr09	irgsp1_rep	CDS	19119971	19120059	.	-	1	Parent=Os09t0493600-01
Chr09	irgsp1_rep	CDS	19119763	19119875	.	-	2	Parent=Os09t0493600-01
Chr09	irgsp1_rep	three_prime_UTR	19119353	19119762	.	-	.	Parent=Os09t0493600-01
Chr09	irgsp1_rep	mRNA	19121959	19125032	.	-	.	ID=Os09t0493700-01;Name=Os09t0493700-01;Locus_id=Os09g0493700;RAP-DB Gene Symbol Synonym(s)=OsNAC42%2C NAC42;CGSNL Gene Symbol=NAC42;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 42;Oryzabase Gene Symbol Synonym(s)=OsNAC42%2C ONAC042%2C ONAC42%2C ONAC051%2C ONAC51%2C OsNTL4%2C NTL4;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 042%2C NAC domain-containing protein 42%2C NAC domain-containing protein 51%2C NAC membrane-bound transcription factor 4%2C NAC MTF4;Note=NUE (nitrogen use efficiency)-related transcription factor;Transcript_evidence=AK099237,AK068501;ORF_evidence=Q0J0L8;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=NAC domain superfamily (IPR036093),NAC domain (IPR003441);NIAS_FLcDNA=J013112C23,J013155B08;Manual Curation=December 11%2C 2019;Literature_PMID=31754193;Oryzabase=11482;Expression=AK099237;TENOR=Os09t0493700-01;KEGG=Os09t0493700-01;Subcellular location=nucleus (GO:0005634)
Chr09	irgsp1_rep	five_prime_UTR	19124946	19125032	.	-	.	Parent=Os09t0493700-01
Chr09	irgsp1_rep	CDS	19124780	19124945	.	-	0	Parent=Os09t0493700-01
Chr09	irgsp1_rep	CDS	19123648	19124690	.	-	2	Parent=Os09t0493700-01
Chr09	irgsp1_rep	CDS	19122846	19123395	.	-	0	Parent=Os09t0493700-01
Chr09	irgsp1_rep	CDS	19122295	19122644	.	-	2	Parent=Os09t0493700-01
Chr09	irgsp1_rep	three_prime_UTR	19121959	19122294	.	-	.	Parent=Os09t0493700-01
Chr09	irgsp1_rep	mRNA	19125425	19129839	.	-	.	ID=Os09t0493800-01;Name=Os09t0493800-01;Locus_id=Os09g0493800;Oryzabase Gene Symbol Synonym(s)=OsDjC70;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C70;Note=Similar to Chaperone protein dnaJ 10 (AtJ10) (AtDjC10).;Transcript_evidence=AK103057 (DDBJ%2C Best hit);ORF_evidence=B4G111 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=J033117K03;Oryzabase=12227;Expression=AK103057;TENOR=Os09t0493800-01;KEGG=Os09t0493800-01
Chr09	irgsp1_rep	five_prime_UTR	19129644	19129839	.	-	.	Parent=Os09t0493800-01
Chr09	irgsp1_rep	CDS	19129557	19129643	.	-	0	Parent=Os09t0493800-01
Chr09	irgsp1_rep	CDS	19129375	19129435	.	-	0	Parent=Os09t0493800-01
Chr09	irgsp1_rep	CDS	19128621	19128702	.	-	2	Parent=Os09t0493800-01
Chr09	irgsp1_rep	CDS	19128219	19128378	.	-	1	Parent=Os09t0493800-01
Chr09	irgsp1_rep	CDS	19127553	19127682	.	-	0	Parent=Os09t0493800-01
Chr09	irgsp1_rep	CDS	19127219	19127377	.	-	2	Parent=Os09t0493800-01
Chr09	irgsp1_rep	CDS	19126910	19127088	.	-	2	Parent=Os09t0493800-01
Chr09	irgsp1_rep	CDS	19126715	19126795	.	-	0	Parent=Os09t0493800-01
Chr09	irgsp1_rep	CDS	19126478	19126624	.	-	0	Parent=Os09t0493800-01
Chr09	irgsp1_rep	CDS	19125768	19125869	.	-	0	Parent=Os09t0493800-01
Chr09	irgsp1_rep	three_prime_UTR	19125425	19125767	.	-	.	Parent=Os09t0493800-01
Chr09	irgsp1_rep	mRNA	19125423	19129780	.	-	.	ID=Os09t0493800-02;Name=Os09t0493800-02;Locus_id=Os09g0493800;Oryzabase Gene Symbol Synonym(s)=OsDjC70;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C70;Note=Similar to Chaperone protein dnaJ 10 (AtJ10) (AtDjC10).;Transcript_evidence=AK105408 (DDBJ%2C Best hit);ORF_evidence=B4G111 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=001-123-F06;Oryzabase=12227;TENOR=Os09t0493800-02
Chr09	irgsp1_rep	five_prime_UTR	19129644	19129780	.	-	.	Parent=Os09t0493800-02
Chr09	irgsp1_rep	CDS	19129557	19129643	.	-	0	Parent=Os09t0493800-02
Chr09	irgsp1_rep	CDS	19129375	19129435	.	-	0	Parent=Os09t0493800-02
Chr09	irgsp1_rep	CDS	19128621	19128702	.	-	2	Parent=Os09t0493800-02
Chr09	irgsp1_rep	CDS	19128219	19128378	.	-	1	Parent=Os09t0493800-02
Chr09	irgsp1_rep	CDS	19127553	19127682	.	-	0	Parent=Os09t0493800-02
Chr09	irgsp1_rep	CDS	19127219	19127377	.	-	2	Parent=Os09t0493800-02
Chr09	irgsp1_rep	CDS	19126910	19127088	.	-	2	Parent=Os09t0493800-02
Chr09	irgsp1_rep	CDS	19126715	19126795	.	-	0	Parent=Os09t0493800-02
Chr09	irgsp1_rep	CDS	19126478	19126624	.	-	0	Parent=Os09t0493800-02
Chr09	irgsp1_rep	CDS	19125768	19125869	.	-	0	Parent=Os09t0493800-02
Chr09	irgsp1_rep	three_prime_UTR	19125423	19125767	.	-	.	Parent=Os09t0493800-02
Chr09	irgsp1_rep	mRNA	19148042	19149848	.	+	.	ID=Os09t0494200-01;Name=Os09t0494200-01;Locus_id=Os09g0494200;RAP-DB Gene Symbol Synonym(s)=BC15%2C OsCTL1;RAP-DB Gene Name Synonym(s)=BRITTLE CULM 15%2C brittle culm15%2C BRITTLE CULM15%2C brittle%2C culm-15%2C chitinase-like1%2C chitinase-like 1;CGSNL Gene Symbol=BC15;CGSNL Gene Name=BRITTLE CULM 15;Oryzabase Gene Symbol Synonym(s)=OsCTL1%2C CHIT13%2C OsCHIT13;Oryzabase Gene Name Synonym(s)=brittle culm15%2C BRITTLE CULM15%2C brittle%2C culm-15%2C chitinase-like1%2C chitinase-like 1%2C chitinase 13;Note=Membrane-associated chitinase-like protein%2C Cellulose biosynthesis;Transcript_evidence=AK103755;ORF_evidence=Q0J0L1;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: chitin catabolic process (GO:0006032),Biological Process: cell wall macromolecule catabolic process (GO:0016998),Molecular Function: chitinase activity (GO:0004568);InterPro=Glycoside hydrolase%2C family 19 (IPR016283),Lysozyme-like domain (IPR023346),Glycoside hydrolase%2C family 19%2C catalytic (IPR000726);NIAS_FLcDNA=J033143D05;Manual Curation=August 25%2C 2014;Literature_PMID=22665444;Oryzabase=11152;TENOR=Os09t0494200-01;KEGG=Os09t0494200-01 (EC:3.2.1.14)
Chr09	irgsp1_rep	five_prime_UTR	19148042	19148365	.	+	.	Parent=Os09t0494200-01
Chr09	irgsp1_rep	CDS	19148366	19148768	.	+	0	Parent=Os09t0494200-01
Chr09	irgsp1_rep	CDS	19148856	19149012	.	+	2	Parent=Os09t0494200-01
Chr09	irgsp1_rep	CDS	19149085	19149505	.	+	1	Parent=Os09t0494200-01
Chr09	irgsp1_rep	three_prime_UTR	19149506	19149848	.	+	.	Parent=Os09t0494200-01
Chr09	irgsp1_rep	mRNA	19148260	19149871	.	+	.	ID=Os09t0494200-02;Name=Os09t0494200-02;Locus_id=Os09g0494200;CGSNL Gene Symbol=BC15;CGSNL Gene Name=BRITTLE CULM 15;Oryzabase Gene Symbol Synonym(s)=OsCTL1%2C CHIT13%2C OsCHIT13;Oryzabase Gene Name Synonym(s)=brittle culm15%2C BRITTLE CULM15%2C brittle%2C culm-15%2C chitinase-like1%2C chitinase-like 1%2C chitinase 13;Note=Similar to Chitinase-like protein (EC 3.2.1.14).;Transcript_evidence=AK069564 (DDBJ%2C Best hit);ORF_evidence=B4G1H3 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: chitin catabolic process (GO:0006032),Biological Process: cell wall macromolecule catabolic process (GO:0016998),Molecular Function: chitinase activity (GO:0004568);InterPro=Glycoside hydrolase%2C family 19%2C catalytic (IPR000726),Glycoside hydrolase%2C family 19 (IPR016283),Lysozyme-like domain (IPR023346);NIAS_FLcDNA=J023019G16;Oryzabase=11152;TENOR=Os09t0494200-02;KEGG=Os09t0494200-02 (EC:3.2.1.14)
Chr09	irgsp1_rep	five_prime_UTR	19148260	19148365	.	+	.	Parent=Os09t0494200-02
Chr09	irgsp1_rep	CDS	19148366	19148768	.	+	0	Parent=Os09t0494200-02
Chr09	irgsp1_rep	CDS	19148856	19149012	.	+	2	Parent=Os09t0494200-02
Chr09	irgsp1_rep	CDS	19149085	19149505	.	+	1	Parent=Os09t0494200-02
Chr09	irgsp1_rep	three_prime_UTR	19149506	19149871	.	+	.	Parent=Os09t0494200-02
Chr09	irgsp1_rep	mRNA	19152106	19155881	.	-	.	ID=Os09t0494300-01;Name=Os09t0494300-01;Locus_id=Os09g0494300;Note=Similar to Methyl-binding domain protein MBD111.;Transcript_evidence=AK107282 (DDBJ%2C Best hit);ORF_evidence=Q94IQ6 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Methyl-CpG DNA binding (IPR001739),Zinc finger%2C CW-type (IPR011124),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=002-126-B01;Expression=AK107282;TENOR=Os09t0494300-01;KEGG=Os09t0494300-01
Chr09	irgsp1_rep	five_prime_UTR	19155409	19155881	.	-	.	Parent=Os09t0494300-01
Chr09	irgsp1_rep	five_prime_UTR	19154549	19154568	.	-	.	Parent=Os09t0494300-01
Chr09	irgsp1_rep	CDS	19154043	19154548	.	-	0	Parent=Os09t0494300-01
Chr09	irgsp1_rep	CDS	19152534	19152587	.	-	1	Parent=Os09t0494300-01
Chr09	irgsp1_rep	CDS	19152190	19152367	.	-	1	Parent=Os09t0494300-01
Chr09	irgsp1_rep	three_prime_UTR	19152106	19152189	.	-	.	Parent=Os09t0494300-01
Chr09	irgsp1_rep	mRNA	19150494	19155796	.	-	.	ID=Os09t0494300-02;Name=Os09t0494300-02;Locus_id=Os09g0494300;Note=Similar to Methyl-CpG-binding domain protein 1 (Methyl-CpG binding protein MBD1).;Transcript_evidence=AK101317 (DDBJ%2C Best hit);ORF_evidence=B7F074 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Methyl-CpG DNA binding (IPR001739),Zinc finger%2C CW-type (IPR011124),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J033034D09;Expression=AK101317;TENOR=Os09t0494300-02;KEGG=Os09t0494300-02
Chr09	irgsp1_rep	five_prime_UTR	19155409	19155796	.	-	.	Parent=Os09t0494300-02
Chr09	irgsp1_rep	five_prime_UTR	19154549	19154568	.	-	.	Parent=Os09t0494300-02
Chr09	irgsp1_rep	CDS	19154043	19154548	.	-	0	Parent=Os09t0494300-02
Chr09	irgsp1_rep	CDS	19152534	19152587	.	-	1	Parent=Os09t0494300-02
Chr09	irgsp1_rep	CDS	19152198	19152367	.	-	1	Parent=Os09t0494300-02
Chr09	irgsp1_rep	CDS	19150885	19151102	.	-	2	Parent=Os09t0494300-02
Chr09	irgsp1_rep	three_prime_UTR	19150494	19150884	.	-	.	Parent=Os09t0494300-02
Chr09	irgsp1_rep	mRNA	19158203	19159173	.	-	.	ID=Os09t0494500-00;Name=Os09t0494500-00;Locus_id=Os09g0494500;Note=Conserved hypothetical protein.;Transcript_evidence=AK330851 (DDBJ);ORF_evidence=A2Z2P2 (UniProt);TENOR=Os09t0494500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	19159005	19159173	.	-	.	Parent=Os09t0494500-00
Chr09	irgsp1_rep	five_prime_UTR	19158841	19158918	.	-	.	Parent=Os09t0494500-00
Chr09	irgsp1_rep	CDS	19158674	19158840	.	-	0	Parent=Os09t0494500-00
Chr09	irgsp1_rep	CDS	19158203	19158584	.	-	1	Parent=Os09t0494500-00
Chr09	irgsp1_rep	mRNA	19166367	19167823	.	+	.	ID=Os09t0494600-01;Name=Os09t0494600-01;Locus_id=Os09g0494600;Note=Protein of unknown function DUF599 family protein.;Transcript_evidence=AK107667 (DDBJ%2C Best hit);ORF_evidence=A2Z2P3 (UniProt);InterPro=Protein of unknown function DUF599 (IPR006747);NIAS_FLcDNA=002-131-H04;Expression=AK107667;TENOR=Os09t0494600-01;KEGG=Os09t0494600-01
Chr09	irgsp1_rep	five_prime_UTR	19166367	19166552	.	+	.	Parent=Os09t0494600-01
Chr09	irgsp1_rep	CDS	19166553	19166720	.	+	0	Parent=Os09t0494600-01
Chr09	irgsp1_rep	CDS	19166830	19167462	.	+	0	Parent=Os09t0494600-01
Chr09	irgsp1_rep	three_prime_UTR	19167463	19167823	.	+	.	Parent=Os09t0494600-01
Chr09	irgsp1_rep	mRNA	19173795	19174744	.	-	.	ID=Os09t0494800-00;Name=Os09t0494800-00;Locus_id=Os09g0494800;Note=Conserved hypothetical protein.;Transcript_evidence=AK333625 (DDBJ);ORF_evidence=A3C091 (UniProt);TENOR=Os09t0494800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	19174234	19174744	.	-	0	Parent=Os09t0494800-00
Chr09	irgsp1_rep	CDS	19173795	19174024	.	-	2	Parent=Os09t0494800-00
Chr09	irgsp1_rep	mRNA	19174867	19176365	.	+	.	ID=Os09t0495000-00;Name=Os09t0495000-00;Locus_id=Os09g0495000;Note=Conserved hypothetical protein.;Transcript_evidence=AK333625 (DDBJ);ORF_evidence=A3C091 (UniProt);TENOR=Os09t0495000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	19174867	19174876	.	+	.	Parent=Os09t0495000-00
Chr09	irgsp1_rep	CDS	19174877	19175038	.	+	0	Parent=Os09t0495000-00
Chr09	irgsp1_rep	CDS	19175176	19175425	.	+	0	Parent=Os09t0495000-00
Chr09	irgsp1_rep	CDS	19175980	19176365	.	+	2	Parent=Os09t0495000-00
Chr09	irgsp1_rep	mRNA	19178884	19179398	.	-	.	ID=Os09t0495100-00;Name=Os09t0495100-00;Locus_id=Os09g0495100;Note=Hypothetical protein.;Transcript_evidence=BT086324 (DDBJ);ORF_evidence=GeneMark;TENOR=Os09t0495100-00
Chr09	irgsp1_rep	CDS	19178884	19179398	.	-	0	Parent=Os09t0495100-00
Chr09	irgsp1_rep	mRNA	19180057	19183117	.	+	.	ID=Os09t0495200-01;Name=Os09t0495200-01;Locus_id=Os09g0495200;Note=Conserved hypothetical protein.;Transcript_evidence=AK102989 (DDBJ%2C Best hit);ORF_evidence=B9G4D0 (UniProt);NIAS_FLcDNA=J033116D04;Expression=AK102989;TENOR=Os09t0495200-01;KEGG=Os09t0495200-01
Chr09	irgsp1_rep	five_prime_UTR	19180057	19180154	.	+	.	Parent=Os09t0495200-01
Chr09	irgsp1_rep	CDS	19180155	19180505	.	+	0	Parent=Os09t0495200-01
Chr09	irgsp1_rep	CDS	19180570	19180774	.	+	0	Parent=Os09t0495200-01
Chr09	irgsp1_rep	CDS	19180883	19181044	.	+	2	Parent=Os09t0495200-01
Chr09	irgsp1_rep	CDS	19181443	19181506	.	+	2	Parent=Os09t0495200-01
Chr09	irgsp1_rep	CDS	19182767	19182953	.	+	1	Parent=Os09t0495200-01
Chr09	irgsp1_rep	three_prime_UTR	19182954	19183117	.	+	.	Parent=Os09t0495200-01
Chr09	irgsp1_rep	mRNA	19184853	19185436	.	-	.	ID=Os09t0495300-00;Name=Os09t0495300-00;Locus_id=Os09g0495300;Note=Conserved hypothetical protein.;Transcript_evidence=AK333625 (DDBJ);ORF_evidence=A2Z2P6 (UniProt);TENOR=Os09t0495300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	19184894	19185436	.	-	0	Parent=Os09t0495300-00
Chr09	irgsp1_rep	three_prime_UTR	19184853	19184893	.	-	.	Parent=Os09t0495300-00
Chr09	irgsp1_rep	mRNA	19185855	19187966	.	-	.	ID=Os09t0495500-01;Name=Os09t0495500-01;Locus_id=Os09g0495500;Note=Conserved hypothetical protein.;Transcript_evidence=AK063579 (DDBJ%2C Best hit);ORF_evidence=A3C094 (UniProt);NIAS_FLcDNA=001-117-H06;TENOR=Os09t0495500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	19187965	19187966	.	-	.	Parent=Os09t0495500-01
Chr09	irgsp1_rep	CDS	19187774	19187964	.	-	0	Parent=Os09t0495500-01
Chr09	irgsp1_rep	CDS	19187477	19187675	.	-	1	Parent=Os09t0495500-01
Chr09	irgsp1_rep	CDS	19187285	19187430	.	-	0	Parent=Os09t0495500-01
Chr09	irgsp1_rep	CDS	19186225	19186231	.	-	1	Parent=Os09t0495500-01
Chr09	irgsp1_rep	three_prime_UTR	19185855	19186224	.	-	.	Parent=Os09t0495500-01
Chr09	irgsp1_rep	mRNA	19194884	19195925	.	+	.	ID=Os09t0496250-00;Name=Os09t0496250-00;Locus_id=Os09g0496250;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G4D1 (UniProt);TENOR=Os09t0496250-00
Chr09	irgsp1_rep	CDS	19194884	19195129	.	+	0	Parent=Os09t0496250-00
Chr09	irgsp1_rep	CDS	19195632	19195925	.	+	0	Parent=Os09t0496250-00
Chr09	irgsp1_rep	mRNA	19215877	19219715	.	+	.	ID=Os09t0497000-01;Name=Os09t0497000-01;Locus_id=Os09g0497000;Oryzabase Gene Name Synonym(s)=Brittle-1;Note=Adenine nucleotide translocator 1 domain containing protein.;Transcript_evidence=AK099705 (DDBJ%2C Best hit);ORF_evidence=XP_002460466.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial inner membrane (GO:0005743),Molecular Function: binding (GO:0005488);InterPro=Mitochondrial carrier protein (IPR002067),Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J013075K02;Oryzabase=22711;Expression=AK099705;TENOR=Os09t0497000-01;KEGG=Os09t0497000-01
Chr09	irgsp1_rep	five_prime_UTR	19215877	19215930	.	+	.	Parent=Os09t0497000-01
Chr09	irgsp1_rep	CDS	19215931	19216182	.	+	0	Parent=Os09t0497000-01
Chr09	irgsp1_rep	CDS	19217624	19217718	.	+	0	Parent=Os09t0497000-01
Chr09	irgsp1_rep	CDS	19218186	19218519	.	+	1	Parent=Os09t0497000-01
Chr09	irgsp1_rep	CDS	19218628	19218865	.	+	0	Parent=Os09t0497000-01
Chr09	irgsp1_rep	CDS	19219096	19219352	.	+	2	Parent=Os09t0497000-01
Chr09	irgsp1_rep	three_prime_UTR	19219353	19219715	.	+	.	Parent=Os09t0497000-01
Chr09	irgsp1_rep	mRNA	19220516	19227564	.	-	.	ID=Os09t0497100-01;Name=Os09t0497100-01;Locus_id=Os09g0497100;Note=Similar to Pumilio RBD (Fragment).;Transcript_evidence=AK070870 (DDBJ%2C Best hit);ORF_evidence=B8BD34 (UniProt);GO=Molecular Function: RNA binding (GO:0003723),Molecular Function: binding (GO:0005488);InterPro=Pumilio RNA-binding repeat (IPR001313),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023075A04;TENOR=Os09t0497100-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	19227314	19227564	.	-	.	Parent=Os09t0497100-01
Chr09	irgsp1_rep	five_prime_UTR	19226405	19226408	.	-	.	Parent=Os09t0497100-01
Chr09	irgsp1_rep	CDS	19225775	19226404	.	-	0	Parent=Os09t0497100-01
Chr09	irgsp1_rep	CDS	19223696	19225044	.	-	0	Parent=Os09t0497100-01
Chr09	irgsp1_rep	CDS	19223458	19223599	.	-	1	Parent=Os09t0497100-01
Chr09	irgsp1_rep	CDS	19223177	19223284	.	-	0	Parent=Os09t0497100-01
Chr09	irgsp1_rep	CDS	19222168	19222380	.	-	0	Parent=Os09t0497100-01
Chr09	irgsp1_rep	CDS	19221974	19222084	.	-	0	Parent=Os09t0497100-01
Chr09	irgsp1_rep	CDS	19221587	19221781	.	-	0	Parent=Os09t0497100-01
Chr09	irgsp1_rep	CDS	19221036	19221207	.	-	0	Parent=Os09t0497100-01
Chr09	irgsp1_rep	CDS	19220883	19220929	.	-	2	Parent=Os09t0497100-01
Chr09	irgsp1_rep	three_prime_UTR	19220516	19220882	.	-	.	Parent=Os09t0497100-01
Chr09	irgsp1_rep	mRNA	19235215	19238701	.	+	.	ID=Os09t0497400-01;Name=Os09t0497400-01;Locus_id=Os09g0497400;Note=Protein of unknown function DUF850%2C transmembrane eukaryotic family protein.;Transcript_evidence=AK068677 (DDBJ%2C Best hit);ORF_evidence=B6TDG5 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Protein of unknown function DUF106%2C transmembrane (IPR002809),Uncharacterised conserved protein UCP010045%2C transmembrane eukaryotic (IPR008568);NIAS_FLcDNA=J013159B19;Expression=AK068677;TENOR=Os09t0497400-01;KEGG=Os09t0497400-01
Chr09	irgsp1_rep	five_prime_UTR	19235215	19235366	.	+	.	Parent=Os09t0497400-01
Chr09	irgsp1_rep	CDS	19235367	19235527	.	+	0	Parent=Os09t0497400-01
Chr09	irgsp1_rep	CDS	19235754	19235847	.	+	1	Parent=Os09t0497400-01
Chr09	irgsp1_rep	CDS	19236092	19236211	.	+	0	Parent=Os09t0497400-01
Chr09	irgsp1_rep	CDS	19236295	19236343	.	+	0	Parent=Os09t0497400-01
Chr09	irgsp1_rep	CDS	19237268	19237367	.	+	2	Parent=Os09t0497400-01
Chr09	irgsp1_rep	CDS	19237479	19237540	.	+	1	Parent=Os09t0497400-01
Chr09	irgsp1_rep	CDS	19237648	19237709	.	+	2	Parent=Os09t0497400-01
Chr09	irgsp1_rep	CDS	19238363	19238470	.	+	0	Parent=Os09t0497400-01
Chr09	irgsp1_rep	three_prime_UTR	19238471	19238701	.	+	.	Parent=Os09t0497400-01
Chr09	irgsp1_rep	mRNA	19235432	19238670	.	+	.	ID=Os09t0497400-02;Name=Os09t0497400-02;Locus_id=Os09g0497400;Note=Similar to Protein pob.;Transcript_evidence=AK058354 (DDBJ%2C Best hit);ORF_evidence=B6TDG5 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Protein of unknown function DUF106%2C transmembrane (IPR002809),Uncharacterised conserved protein UCP010045%2C transmembrane eukaryotic (IPR008568);NIAS_FLcDNA=001-014-E10;Expression=AK058354;TENOR=Os09t0497400-02;KEGG=Os09t0497400-02
Chr09	irgsp1_rep	five_prime_UTR	19235432	19235432	.	+	.	Parent=Os09t0497400-02
Chr09	irgsp1_rep	CDS	19235433	19235527	.	+	0	Parent=Os09t0497400-02
Chr09	irgsp1_rep	CDS	19235754	19235847	.	+	1	Parent=Os09t0497400-02
Chr09	irgsp1_rep	CDS	19236092	19236211	.	+	0	Parent=Os09t0497400-02
Chr09	irgsp1_rep	CDS	19236295	19236343	.	+	0	Parent=Os09t0497400-02
Chr09	irgsp1_rep	CDS	19237268	19237367	.	+	2	Parent=Os09t0497400-02
Chr09	irgsp1_rep	CDS	19237479	19237540	.	+	1	Parent=Os09t0497400-02
Chr09	irgsp1_rep	CDS	19237648	19237709	.	+	2	Parent=Os09t0497400-02
Chr09	irgsp1_rep	CDS	19238363	19238470	.	+	0	Parent=Os09t0497400-02
Chr09	irgsp1_rep	three_prime_UTR	19238471	19238670	.	+	.	Parent=Os09t0497400-02
Chr09	irgsp1_rep	mRNA	19239245	19240734	.	-	.	ID=Os09t0497500-01;Name=Os09t0497500-01;Locus_id=Os09g0497500;Oryzabase Gene Symbol Synonym(s)=OsSAG12;Oryzabase Gene Name Synonym(s)=Senescence-associated Gene12;Note=Similar to Ervatamin B (EC 3.4.22.-) (ERV-B).;Transcript_evidence=AK072767 (DDBJ%2C Best hit),AK099197 (DDBJ%2C Best hit);ORF_evidence=B4FUB6 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase%2C cysteine peptidase active site (IPR000169),Peptidase C1A%2C papain C-terminal (IPR000668),Peptidase C1A%2C papain (IPR013128),Proteinase inhibitor I29%2C cathepsin propeptide (IPR013201);NIAS_FLcDNA=J023138P12,J023120K15;Oryzabase=11669;Expression=AK072767;TENOR=Os09t0497500-01;KEGG=Os09t0497500-01
Chr09	irgsp1_rep	five_prime_UTR	19240670	19240734	.	-	.	Parent=Os09t0497500-01
Chr09	irgsp1_rep	CDS	19240346	19240669	.	-	0	Parent=Os09t0497500-01
Chr09	irgsp1_rep	CDS	19240159	19240264	.	-	0	Parent=Os09t0497500-01
Chr09	irgsp1_rep	CDS	19239452	19240071	.	-	2	Parent=Os09t0497500-01
Chr09	irgsp1_rep	three_prime_UTR	19239245	19239451	.	-	.	Parent=Os09t0497500-01
Chr09	irgsp1_rep	mRNA	19241018	19244486	.	-	.	ID=Os09t0497600-01;Name=Os09t0497600-01;Locus_id=Os09g0497600;Oryzabase Gene Symbol Synonym(s)=OsFbox493%2C Os_F0049;Oryzabase Gene Name Synonym(s)=F-box protein 493;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK100566 (DDBJ%2C Best hit);ORF_evidence=NP_001152702.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023104K05;Oryzabase=17263;Expression=AK100566;TENOR=Os09t0497600-01;KEGG=Os09t0497600-01
Chr09	irgsp1_rep	five_prime_UTR	19244321	19244486	.	-	.	Parent=Os09t0497600-01
Chr09	irgsp1_rep	five_prime_UTR	19243248	19243251	.	-	.	Parent=Os09t0497600-01
Chr09	irgsp1_rep	CDS	19243008	19243247	.	-	0	Parent=Os09t0497600-01
Chr09	irgsp1_rep	three_prime_UTR	19241018	19243007	.	-	.	Parent=Os09t0497600-01
Chr09	irgsp1_rep	mRNA	19244923	19250283	.	+	.	ID=Os09t0497700-01;Name=Os09t0497700-01;Locus_id=Os09g0497700;CGSNL Gene Symbol=ATG16;CGSNL Gene Name=AUTOPHAGY ASSOCIATED GENE 16;Oryzabase Gene Symbol Synonym(s)=OsATG16;Oryzabase Gene Name Synonym(s)=autophagy 16;Note=Autophagy protein 16 domain containing protein.;Transcript_evidence=AK101485 (DDBJ%2C Best hit);ORF_evidence=NP_567873.1 (RefSeq);NIAS_FLcDNA=J033041K01;Oryzabase=9659;Expression=AK101485;TENOR=Os09t0497700-01;KEGG=Os09t0497700-01
Chr09	irgsp1_rep	five_prime_UTR	19244923	19245043	.	+	.	Parent=Os09t0497700-01
Chr09	irgsp1_rep	CDS	19245044	19245215	.	+	0	Parent=Os09t0497700-01
Chr09	irgsp1_rep	CDS	19245955	19246082	.	+	2	Parent=Os09t0497700-01
Chr09	irgsp1_rep	CDS	19246168	19246239	.	+	0	Parent=Os09t0497700-01
Chr09	irgsp1_rep	CDS	19246316	19246429	.	+	0	Parent=Os09t0497700-01
Chr09	irgsp1_rep	CDS	19246830	19246898	.	+	0	Parent=Os09t0497700-01
Chr09	irgsp1_rep	CDS	19246974	19247030	.	+	0	Parent=Os09t0497700-01
Chr09	irgsp1_rep	CDS	19247543	19247596	.	+	0	Parent=Os09t0497700-01
Chr09	irgsp1_rep	CDS	19247668	19247730	.	+	0	Parent=Os09t0497700-01
Chr09	irgsp1_rep	CDS	19247824	19247886	.	+	0	Parent=Os09t0497700-01
Chr09	irgsp1_rep	CDS	19248084	19248248	.	+	0	Parent=Os09t0497700-01
Chr09	irgsp1_rep	CDS	19248392	19248547	.	+	0	Parent=Os09t0497700-01
Chr09	irgsp1_rep	CDS	19249181	19249261	.	+	0	Parent=Os09t0497700-01
Chr09	irgsp1_rep	CDS	19249341	19249402	.	+	0	Parent=Os09t0497700-01
Chr09	irgsp1_rep	CDS	19249491	19249575	.	+	1	Parent=Os09t0497700-01
Chr09	irgsp1_rep	three_prime_UTR	19249576	19249630	.	+	.	Parent=Os09t0497700-01
Chr09	irgsp1_rep	three_prime_UTR	19249946	19250283	.	+	.	Parent=Os09t0497700-01
Chr09	irgsp1_rep	mRNA	19253287	19255954	.	-	.	ID=Os09t0497900-01;Name=Os09t0497900-01;Locus_id=Os09g0497900;CGSNL Gene Symbol=NAC72;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 72;Oryzabase Gene Symbol Synonym(s)=ONAC072%2C ONAC72%2C DLN228%2C OsDLN228;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 072%2C NAC domain-containing protein 72%2C DLN repressor 228%2C DLN motif protein 228;Note=No apical meristem (NAM) protein domain containing protein.;Transcript_evidence=AK102511 (DDBJ%2C Best hit);ORF_evidence=XP_002330817.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=J033095I08;Oryzabase=11496;Expression=AK102511;TENOR=Os09t0497900-01;KEGG=Os09t0497900-01
Chr09	irgsp1_rep	five_prime_UTR	19255575	19255954	.	-	.	Parent=Os09t0497900-01
Chr09	irgsp1_rep	CDS	19255373	19255574	.	-	0	Parent=Os09t0497900-01
Chr09	irgsp1_rep	CDS	19254120	19254400	.	-	2	Parent=Os09t0497900-01
Chr09	irgsp1_rep	CDS	19253422	19253997	.	-	0	Parent=Os09t0497900-01
Chr09	irgsp1_rep	three_prime_UTR	19253287	19253421	.	-	.	Parent=Os09t0497900-01
Chr09	irgsp1_rep	mRNA	19260247	19265672	.	+	.	ID=Os09t0498000-01;Name=Os09t0498000-01;Locus_id=Os09g0498000;Note=Hypothetical gene.;Transcript_evidence=AK120662 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013158K14;Expression=AK120662;TENOR=Os09t0498000-01;KEGG=Os09t0498000-01
Chr09	irgsp1_rep	five_prime_UTR	19260247	19264287	.	+	.	Parent=Os09t0498000-01
Chr09	irgsp1_rep	CDS	19264288	19264503	.	+	0	Parent=Os09t0498000-01
Chr09	irgsp1_rep	three_prime_UTR	19264504	19264981	.	+	.	Parent=Os09t0498000-01
Chr09	irgsp1_rep	three_prime_UTR	19265140	19265272	.	+	.	Parent=Os09t0498000-01
Chr09	irgsp1_rep	three_prime_UTR	19265386	19265672	.	+	.	Parent=Os09t0498000-01
Chr09	irgsp1_rep	mRNA	19265965	19267538	.	+	.	ID=Os09t0498100-01;Name=Os09t0498100-01;Locus_id=Os09g0498100;Note=Similar to 30S ribosomal protein S16.;Transcript_evidence=AK064108 (DDBJ%2C Best hit);ORF_evidence=B4FVT8 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S16 (IPR000307),Ribosomal protein S16 domain (IPR023803);NIAS_FLcDNA=002-101-F08;Expression=AK064108;TENOR=Os09t0498100-01;KEGG=Os09t0498100-01
Chr09	irgsp1_rep	five_prime_UTR	19265965	19266074	.	+	.	Parent=Os09t0498100-01
Chr09	irgsp1_rep	CDS	19266075	19266207	.	+	0	Parent=Os09t0498100-01
Chr09	irgsp1_rep	CDS	19266455	19266500	.	+	2	Parent=Os09t0498100-01
Chr09	irgsp1_rep	CDS	19267175	19267406	.	+	1	Parent=Os09t0498100-01
Chr09	irgsp1_rep	three_prime_UTR	19267407	19267538	.	+	.	Parent=Os09t0498100-01
Chr09	irgsp1_rep	mRNA	19268266	19270434	.	-	.	ID=Os09t0498200-01;Name=Os09t0498200-01;Locus_id=Os09g0498200;Note=Hypothetical protein.;Transcript_evidence=AK072354 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023061A21;Expression=AK072354;TENOR=Os09t0498200-01;KEGG=Os09t0498200-01
Chr09	irgsp1_rep	five_prime_UTR	19269415	19270434	.	-	.	Parent=Os09t0498200-01
Chr09	irgsp1_rep	CDS	19268728	19269414	.	-	0	Parent=Os09t0498200-01
Chr09	irgsp1_rep	three_prime_UTR	19268266	19268727	.	-	.	Parent=Os09t0498200-01
Chr09	irgsp1_rep	mRNA	19268704	19269755	.	+	.	ID=Os09t0498300-00;Name=Os09t0498300-00;Locus_id=Os09g0498300;Note=Similar to Zeamatin.;Transcript_evidence=EU955711 (DDBJ);ORF_evidence=E5RDD8 (UniProt);InterPro=Thaumatin%2C pathogenesis-related (IPR001938),Thaumatin%2C conserved site (IPR017949);TENOR=Os09t0498300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	19268704	19269269	.	+	0	Parent=Os09t0498300-00
Chr09	irgsp1_rep	CDS	19269335	19269755	.	+	1	Parent=Os09t0498300-00
Chr09	irgsp1_rep	mRNA	19272336	19272476	.	-	.	ID=Os09t0498400-01;Name=Os09t0498400-01;Locus_id=Os09g0498400;Note=Non-protein coding transcript.;Transcript_evidence=AK121017 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023049A19;TENOR=Os09t0498400-01
Chr09	irgsp1_rep	exon	19272336	19272476	.	-	.	Parent=Os09t0498400-01
Chr09	irgsp1_rep	mRNA	19272541	19275771	.	-	.	ID=Os09t0498500-00;Name=Os09t0498500-00;Locus_id=Os09g0498500;Note=NAD-binding site containing protein.;Transcript_evidence=tplb0003o15 (Wheat FLcDNA);ORF_evidence=B6TIK6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FAD dependent oxidoreductase (IPR006076);TENOR=Os09t0498500-00;KEGG=Os09t0498500-00
Chr09	irgsp1_rep	five_prime_UTR	19275710	19275771	.	-	.	Parent=Os09t0498500-00
Chr09	irgsp1_rep	CDS	19275151	19275709	.	-	0	Parent=Os09t0498500-00
Chr09	irgsp1_rep	CDS	19272541	19273232	.	-	2	Parent=Os09t0498500-00
Chr09	irgsp1_rep	mRNA	19279855	19285981	.	+	.	ID=Os09t0498600-01;Name=Os09t0498600-01;Locus_id=Os09g0498600;Note=K Homology%2C type 1%2C subgroup domain containing protein.;Transcript_evidence=AK066995 (DDBJ%2C Best hit);ORF_evidence=B8BD38 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=K Homology (IPR004087),K Homology%2C type 1 (IPR004088),K Homology%2C type 1%2C subgroup (IPR018111);NIAS_FLcDNA=J013089D20;Expression=AK066995;TENOR=Os09t0498600-01;KEGG=Os09t0498600-01
Chr09	irgsp1_rep	five_prime_UTR	19279855	19279895	.	+	.	Parent=Os09t0498600-01
Chr09	irgsp1_rep	CDS	19279896	19280384	.	+	0	Parent=Os09t0498600-01
Chr09	irgsp1_rep	CDS	19281195	19281596	.	+	0	Parent=Os09t0498600-01
Chr09	irgsp1_rep	CDS	19281837	19282088	.	+	0	Parent=Os09t0498600-01
Chr09	irgsp1_rep	CDS	19282846	19283223	.	+	0	Parent=Os09t0498600-01
Chr09	irgsp1_rep	CDS	19283632	19283708	.	+	0	Parent=Os09t0498600-01
Chr09	irgsp1_rep	CDS	19283982	19284090	.	+	1	Parent=Os09t0498600-01
Chr09	irgsp1_rep	CDS	19284699	19284842	.	+	0	Parent=Os09t0498600-01
Chr09	irgsp1_rep	three_prime_UTR	19284843	19284856	.	+	.	Parent=Os09t0498600-01
Chr09	irgsp1_rep	three_prime_UTR	19285092	19285321	.	+	.	Parent=Os09t0498600-01
Chr09	irgsp1_rep	three_prime_UTR	19285447	19285981	.	+	.	Parent=Os09t0498600-01
Chr09	irgsp1_rep	mRNA	19279855	19286043	.	+	.	ID=Os09t0498600-02;Name=Os09t0498600-02;Locus_id=Os09g0498600;Note=K Homology%2C type 1 domain containing protein.;Transcript_evidence=AK119581 (DDBJ%2C Best hit);ORF_evidence=B8BD38 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=K Homology%2C type 1 (IPR004088),K Homology%2C type 1%2C subgroup (IPR018111);NIAS_FLcDNA=002-117-C01;TENOR=Os09t0498600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	19279855	19279895	.	+	.	Parent=Os09t0498600-02
Chr09	irgsp1_rep	CDS	19279896	19280384	.	+	0	Parent=Os09t0498600-02
Chr09	irgsp1_rep	CDS	19281200	19281259	.	+	0	Parent=Os09t0498600-02
Chr09	irgsp1_rep	three_prime_UTR	19281260	19281596	.	+	.	Parent=Os09t0498600-02
Chr09	irgsp1_rep	three_prime_UTR	19281837	19282088	.	+	.	Parent=Os09t0498600-02
Chr09	irgsp1_rep	three_prime_UTR	19282846	19283223	.	+	.	Parent=Os09t0498600-02
Chr09	irgsp1_rep	three_prime_UTR	19283632	19283708	.	+	.	Parent=Os09t0498600-02
Chr09	irgsp1_rep	three_prime_UTR	19283982	19284090	.	+	.	Parent=Os09t0498600-02
Chr09	irgsp1_rep	three_prime_UTR	19284699	19284856	.	+	.	Parent=Os09t0498600-02
Chr09	irgsp1_rep	three_prime_UTR	19285160	19285321	.	+	.	Parent=Os09t0498600-02
Chr09	irgsp1_rep	three_prime_UTR	19285447	19286043	.	+	.	Parent=Os09t0498600-02
Chr09	irgsp1_rep	mRNA	19286875	19289898	.	+	.	ID=Os09t0498700-01;Name=Os09t0498700-01;Locus_id=Os09g0498700;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK074021 (DDBJ%2C Best hit);ORF_evidence=A2Z2R1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033073M10;TENOR=Os09t0498700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	19286875	19287189	.	+	.	Parent=Os09t0498700-01
Chr09	irgsp1_rep	CDS	19287190	19287210	.	+	0	Parent=Os09t0498700-01
Chr09	irgsp1_rep	CDS	19287841	19288152	.	+	0	Parent=Os09t0498700-01
Chr09	irgsp1_rep	three_prime_UTR	19288153	19288758	.	+	.	Parent=Os09t0498700-01
Chr09	irgsp1_rep	three_prime_UTR	19288874	19289026	.	+	.	Parent=Os09t0498700-01
Chr09	irgsp1_rep	three_prime_UTR	19289399	19289898	.	+	.	Parent=Os09t0498700-01
Chr09	irgsp1_rep	mRNA	19292778	19296073	.	-	.	ID=Os09t0498800-01;Name=Os09t0498800-01;Locus_id=Os09g0498800;Note=Protein of unknown function DUF246%2C plant family protein.;Transcript_evidence=AK070571 (DDBJ%2C Best hit);ORF_evidence=B8BD39 (UniProt);InterPro=GDP-fucose protein O-fucosyltransferase (IPR019378);NIAS_FLcDNA=J023058K10;Expression=AK070571;TENOR=Os09t0498800-01;KEGG=Os09t0498800-01
Chr09	irgsp1_rep	five_prime_UTR	19295962	19296073	.	-	.	Parent=Os09t0498800-01
Chr09	irgsp1_rep	CDS	19295845	19295961	.	-	0	Parent=Os09t0498800-01
Chr09	irgsp1_rep	CDS	19294849	19294993	.	-	0	Parent=Os09t0498800-01
Chr09	irgsp1_rep	CDS	19294701	19294768	.	-	2	Parent=Os09t0498800-01
Chr09	irgsp1_rep	CDS	19294459	19294544	.	-	0	Parent=Os09t0498800-01
Chr09	irgsp1_rep	CDS	19293618	19294201	.	-	1	Parent=Os09t0498800-01
Chr09	irgsp1_rep	CDS	19293105	19293382	.	-	2	Parent=Os09t0498800-01
Chr09	irgsp1_rep	three_prime_UTR	19292778	19293104	.	-	.	Parent=Os09t0498800-01
Chr09	irgsp1_rep	mRNA	19303054	19304934	.	-	.	ID=Os09t0499000-01;Name=Os09t0499000-01;Locus_id=Os09g0499000;RAP-DB Gene Symbol Synonym(s)=SKIN1;RAP-DB Gene Name Synonym(s)=SnRK1A-interacting negative regulator 1;CGSNL Gene Symbol=SKIN1;CGSNL Gene Name=SNRK1A-INTERACTING NEGATIVE REGULATOR 1;Oryzabase Gene Symbol Synonym(s)=OsSKIN1%2C OsO3L8%2C O3L8;Oryzabase Gene Name Synonym(s)=SnRK1A-interacting negative regulator 1%2C OXIDATIVE STRESS 3-like 8%2C OXS3-like 8;Note=SnRK1A protein kinase-interacting negative regulator%2C Repression of sugar/nutrient starvation signaling;Transcript_evidence=AK060116;ORF_evidence=Q0J0U2;NIAS_FLcDNA=006-308-E08;Manual Curation=June 9%2C 2014;Literature_PMID=24569770;Oryzabase=19056;Expression=AK060116;TENOR=Os09t0499000-01;KEGG=Os09t0499000-01
Chr09	irgsp1_rep	five_prime_UTR	19304770	19304934	.	-	.	Parent=Os09t0499000-01
Chr09	irgsp1_rep	CDS	19304441	19304769	.	-	0	Parent=Os09t0499000-01
Chr09	irgsp1_rep	CDS	19303220	19303670	.	-	1	Parent=Os09t0499000-01
Chr09	irgsp1_rep	three_prime_UTR	19303054	19303219	.	-	.	Parent=Os09t0499000-01
Chr09	irgsp1_rep	mRNA	19303242	19303739	.	+	.	ID=Os09t0499201-00;Name=Os09t0499201-00;Locus_id=Os09g0499201;Note=Hypothetical gene.;Transcript_evidence=EU947570 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0499201-00;KEGG=Os09t0499201-00
Chr09	irgsp1_rep	five_prime_UTR	19303242	19303341	.	+	.	Parent=Os09t0499201-00
Chr09	irgsp1_rep	CDS	19303342	19303557	.	+	0	Parent=Os09t0499201-00
Chr09	irgsp1_rep	three_prime_UTR	19303558	19303739	.	+	.	Parent=Os09t0499201-00
Chr09	irgsp1_rep	mRNA	19321173	19322041	.	+	.	ID=Os09t0499300-00;Name=Os09t0499300-00;Locus_id=Os09g0499300;Note=Hypothetical conserved gene.;Transcript_evidence=EU954970 (DDBJ);ORF_evidence=B8BD41 (UniProt);TENOR=Os09t0499300-00;KEGG=Os09t0499300-00
Chr09	irgsp1_rep	five_prime_UTR	19321173	19321293	.	+	.	Parent=Os09t0499300-00
Chr09	irgsp1_rep	CDS	19321294	19321662	.	+	0	Parent=Os09t0499300-00
Chr09	irgsp1_rep	three_prime_UTR	19321663	19322041	.	+	.	Parent=Os09t0499300-00
Chr09	irgsp1_rep	mRNA	19329898	19331922	.	-	.	ID=Os09t0499400-01;Name=Os09t0499400-01;Locus_id=Os09g0499400;Note=Domain of unknown function DUF2828 domain containing protein.;Transcript_evidence=AK102245 (DDBJ%2C Best hit),AK101111 (DDBJ%2C Best hit);ORF_evidence=B8BD42 (UniProt);InterPro=Domain of unknown function DUF2828 (IPR024553);NIAS_FLcDNA=J033088E17,J033025F04;Expression=AK102245;TENOR=Os09t0499400-01;KEGG=Os09t0499400-01
Chr09	irgsp1_rep	five_prime_UTR	19331845	19331922	.	-	.	Parent=Os09t0499400-01
Chr09	irgsp1_rep	CDS	19330060	19331844	.	-	0	Parent=Os09t0499400-01
Chr09	irgsp1_rep	three_prime_UTR	19329898	19330059	.	-	.	Parent=Os09t0499400-01
Chr09	irgsp1_rep	mRNA	19333130	19335080	.	-	.	ID=Os09t0499450-00;Name=Os09t0499450-00;Locus_id=Os09g0499450;Note=Hypothetical protein.;Transcript_evidence=tplb0058b18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0499450-00
Chr09	irgsp1_rep	five_prime_UTR	19335079	19335080	.	-	.	Parent=Os09t0499450-00
Chr09	irgsp1_rep	CDS	19333771	19335078	.	-	0	Parent=Os09t0499450-00
Chr09	irgsp1_rep	CDS	19333130	19333617	.	-	0	Parent=Os09t0499450-00
Chr09	irgsp1_rep	mRNA	19334672	19335218	.	+	.	ID=Os09t0499500-01;Name=Os09t0499500-01;Locus_id=Os09g0499500;Note=Domain of unknown function DUF2828 domain containing protein.;Transcript_evidence=AK242167 (DDBJ%2C Best hit);ORF_evidence=A3C0B4 (UniProt);InterPro=Domain of unknown function DUF2828 (IPR024553);NIAS_FLcDNA=J075157M01;TENOR=Os09t0499500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	19334672	19334673	.	+	.	Parent=Os09t0499500-01
Chr09	irgsp1_rep	CDS	19334674	19335075	.	+	0	Parent=Os09t0499500-01
Chr09	irgsp1_rep	three_prime_UTR	19335076	19335218	.	+	.	Parent=Os09t0499500-01
Chr09	irgsp1_rep	mRNA	19335703	19339472	.	-	.	ID=Os09t0499600-01;Name=Os09t0499600-01;Locus_id=Os09g0499600;Note=Protein of unknown function DUF659 domain containing protein.;Transcript_evidence=AK067280 (DDBJ%2C Best hit);ORF_evidence=B8BD43 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Zinc finger%2C BED-type predicted (IPR003656),Domain of unknown function DUF659 (IPR007021),HAT dimerisation (IPR008906),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J013103D22;Expression=AK067280;TENOR=Os09t0499600-01;KEGG=Os09t0499600-01
Chr09	irgsp1_rep	five_prime_UTR	19339258	19339472	.	-	.	Parent=Os09t0499600-01
Chr09	irgsp1_rep	CDS	19339091	19339257	.	-	0	Parent=Os09t0499600-01
Chr09	irgsp1_rep	CDS	19336817	19338705	.	-	1	Parent=Os09t0499600-01
Chr09	irgsp1_rep	CDS	19336461	19336665	.	-	2	Parent=Os09t0499600-01
Chr09	irgsp1_rep	CDS	19336058	19336361	.	-	1	Parent=Os09t0499600-01
Chr09	irgsp1_rep	three_prime_UTR	19335703	19336057	.	-	.	Parent=Os09t0499600-01
Chr09	irgsp1_rep	mRNA	19352405	19356062	.	-	.	ID=Os09t0500100-01;Name=Os09t0500100-01;Locus_id=Os09g0500100;Oryzabase Gene Symbol Synonym(s)=OsFbox494%2C Os_F0637;Oryzabase Gene Name Synonym(s)=F-box protein 494;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK119477 (DDBJ%2C Best hit);ORF_evidence=A3C0B7 (UniProt);NIAS_FLcDNA=001-134-B09;Oryzabase=17264;Expression=AK119477;TENOR=Os09t0500100-01;KEGG=Os09t0500100-01
Chr09	irgsp1_rep	five_prime_UTR	19355892	19356062	.	-	.	Parent=Os09t0500100-01
Chr09	irgsp1_rep	CDS	19355801	19355891	.	-	0	Parent=Os09t0500100-01
Chr09	irgsp1_rep	CDS	19354812	19354918	.	-	2	Parent=Os09t0500100-01
Chr09	irgsp1_rep	CDS	19353484	19354326	.	-	0	Parent=Os09t0500100-01
Chr09	irgsp1_rep	CDS	19353279	19353377	.	-	0	Parent=Os09t0500100-01
Chr09	irgsp1_rep	three_prime_UTR	19353213	19353278	.	-	.	Parent=Os09t0500100-01
Chr09	irgsp1_rep	three_prime_UTR	19352405	19352891	.	-	.	Parent=Os09t0500100-01
Chr09	irgsp1_rep	mRNA	19356356	19356847	.	-	.	ID=Os09t0500151-00;Name=Os09t0500151-00;Locus_id=Os09g0500151;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os09t0500151-00;KEGG=Os09t0500151-00
Chr09	irgsp1_rep	CDS	19356356	19356847	.	-	0	Parent=Os09t0500151-00
Chr09	irgsp1_rep	mRNA	19357923	19360992	.	-	.	ID=Os09t0500200-01;Name=Os09t0500200-01;Locus_id=Os09g0500200;Note=Similar to oxidoreductase.;Transcript_evidence=AK071129 (DDBJ%2C Best hit);ORF_evidence=NP_001149769.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020),Molecular Function: NADH dehydrogenase (ubiquinone) activity (GO:0008137),Molecular Function: electron carrier activity (GO:0009055);InterPro=NADH:ubiquinone oxidoreductase%2C 17.2kDa subunit (IPR007763);NIAS_FLcDNA=J023077C23;TENOR=Os09t0500200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	19360790	19360992	.	-	.	Parent=Os09t0500200-01
Chr09	irgsp1_rep	CDS	19360675	19360789	.	-	0	Parent=Os09t0500200-01
Chr09	irgsp1_rep	CDS	19360527	19360586	.	-	2	Parent=Os09t0500200-01
Chr09	irgsp1_rep	CDS	19360291	19360343	.	-	2	Parent=Os09t0500200-01
Chr09	irgsp1_rep	CDS	19360100	19360151	.	-	0	Parent=Os09t0500200-01
Chr09	irgsp1_rep	CDS	19359358	19359417	.	-	2	Parent=Os09t0500200-01
Chr09	irgsp1_rep	CDS	19358832	19358903	.	-	2	Parent=Os09t0500200-01
Chr09	irgsp1_rep	CDS	19358661	19358727	.	-	2	Parent=Os09t0500200-01
Chr09	irgsp1_rep	CDS	19358174	19358237	.	-	1	Parent=Os09t0500200-01
Chr09	irgsp1_rep	three_prime_UTR	19357923	19358173	.	-	.	Parent=Os09t0500200-01
Chr09	irgsp1_rep	mRNA	19363907	19368738	.	+	.	ID=Os09t0500300-01;Name=Os09t0500300-01;Locus_id=Os09g0500300;Note=Similar to Type II inositol-1%2C4%2C5-trisphosphate 5-phosphatase 12 (EC 3.1.3.36) (At5PTase12) (FRAGILE FIBER3 protein).;Transcript_evidence=AK100152 (DDBJ%2C Best hit);ORF_evidence=B7EQ58 (UniProt);GO=Molecular Function: inositol or phosphatidylinositol phosphatase activity (GO:0004437),Molecular Function: protein binding (GO:0005515);InterPro=Inositol polyphosphate-related phosphatase (IPR000300),WD40 repeat (IPR001680),Endonuclease/exonuclease/phosphatase (IPR005135),WD40/YVTN repeat-like-containing domain (IPR015943);NIAS_FLcDNA=J023015M11;Expression=AK100152;TENOR=Os09t0500300-01;KEGG=Os09t0500300-01 (EC:3.1.3.36)
Chr09	irgsp1_rep	five_prime_UTR	19363907	19363908	.	+	.	Parent=Os09t0500300-01
Chr09	irgsp1_rep	CDS	19363909	19364272	.	+	0	Parent=Os09t0500300-01
Chr09	irgsp1_rep	CDS	19364429	19364681	.	+	2	Parent=Os09t0500300-01
Chr09	irgsp1_rep	CDS	19364786	19365590	.	+	1	Parent=Os09t0500300-01
Chr09	irgsp1_rep	CDS	19365954	19366078	.	+	0	Parent=Os09t0500300-01
Chr09	irgsp1_rep	CDS	19366220	19366304	.	+	1	Parent=Os09t0500300-01
Chr09	irgsp1_rep	CDS	19366460	19366613	.	+	0	Parent=Os09t0500300-01
Chr09	irgsp1_rep	CDS	19366746	19366783	.	+	2	Parent=Os09t0500300-01
Chr09	irgsp1_rep	CDS	19366859	19367126	.	+	0	Parent=Os09t0500300-01
Chr09	irgsp1_rep	CDS	19367281	19367404	.	+	2	Parent=Os09t0500300-01
Chr09	irgsp1_rep	CDS	19367485	19367845	.	+	1	Parent=Os09t0500300-01
Chr09	irgsp1_rep	CDS	19368087	19368515	.	+	0	Parent=Os09t0500300-01
Chr09	irgsp1_rep	three_prime_UTR	19368516	19368738	.	+	.	Parent=Os09t0500300-01
Chr09	irgsp1_rep	mRNA	19369185	19382948	.	+	.	ID=Os09t0500600-01;Name=Os09t0500600-01;Locus_id=Os09g0500600;Oryzabase Gene Symbol Synonym(s)=TOP3;Oryzabase Gene Name Synonym(s)=topoisomerase 3;Note=Similar to DNA topoisomerase III beta-1 (EC 5.99.1.2). Splice isoform 2.;Transcript_evidence=AK066999 (DDBJ%2C Best hit);ORF_evidence=B8BD52 (UniProt);GO=Biological Process: DNA topological change (GO:0006265),Cellular Component: Chromosome (GO:0005694),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA topoisomerase activity (GO:0003916),Molecular Function: DNA topoisomerase type I activity (GO:0003917);InterPro=DNA topoisomerase%2C type IA (IPR000380),DNA topoisomerase%2C type IA%2C domain 2 (IPR003601),DNA topoisomerase%2C type IA%2C DNA-binding (IPR003602),Toprim domain (IPR006171),DNA topoisomerase%2C type IA%2C central (IPR013497),DNA topoisomerase%2C type IA%2C central region%2C subdomain 1 (IPR013824),DNA topoisomerase%2C type IA%2C central region%2C subdomain 2 (IPR013825),DNA topoisomerase%2C type IA%2C core domain (IPR023405),DNA topoisomerase%2C type IA%2C active site (IPR023406);NIAS_FLcDNA=J013092P06;Oryzabase=21311;Expression=AK066999;TENOR=Os09t0500600-01;KEGG=Os09t0500600-01 (EC:5.99.1.2)
Chr09	irgsp1_rep	five_prime_UTR	19369185	19369325	.	+	.	Parent=Os09t0500600-01
Chr09	irgsp1_rep	CDS	19369326	19369346	.	+	0	Parent=Os09t0500600-01
Chr09	irgsp1_rep	CDS	19369486	19369542	.	+	0	Parent=Os09t0500600-01
Chr09	irgsp1_rep	CDS	19370473	19370576	.	+	0	Parent=Os09t0500600-01
Chr09	irgsp1_rep	CDS	19376734	19376827	.	+	1	Parent=Os09t0500600-01
Chr09	irgsp1_rep	CDS	19377259	19377358	.	+	0	Parent=Os09t0500600-01
Chr09	irgsp1_rep	CDS	19377788	19378031	.	+	2	Parent=Os09t0500600-01
Chr09	irgsp1_rep	CDS	19378147	19378309	.	+	1	Parent=Os09t0500600-01
Chr09	irgsp1_rep	CDS	19378389	19378508	.	+	0	Parent=Os09t0500600-01
Chr09	irgsp1_rep	CDS	19378837	19378916	.	+	0	Parent=Os09t0500600-01
Chr09	irgsp1_rep	CDS	19379434	19379712	.	+	1	Parent=Os09t0500600-01
Chr09	irgsp1_rep	CDS	19379890	19380058	.	+	1	Parent=Os09t0500600-01
Chr09	irgsp1_rep	CDS	19380146	19380274	.	+	0	Parent=Os09t0500600-01
Chr09	irgsp1_rep	CDS	19380403	19380615	.	+	0	Parent=Os09t0500600-01
Chr09	irgsp1_rep	CDS	19381317	19381496	.	+	0	Parent=Os09t0500600-01
Chr09	irgsp1_rep	CDS	19381961	19382608	.	+	0	Parent=Os09t0500600-01
Chr09	irgsp1_rep	three_prime_UTR	19382609	19382948	.	+	.	Parent=Os09t0500600-01
Chr09	irgsp1_rep	mRNA	19384657	19387021	.	-	.	ID=Os09t0500900-01;Name=Os09t0500900-01;Locus_id=Os09g0500900;Note=Protein of unknown function DUF568 domain containing protein.;Transcript_evidence=AK243451 (DDBJ%2C Best hit);ORF_evidence=B6UA62 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=CytoChrome b561%2C eukaryote (IPR004877),DOMON domain (IPR005018),CytoChrome b561/ferric reductase transmembrane (IPR006593),Uncharacterised conserved protein UCP037471 (IPR017214);NIAS_FLcDNA=J100070C01;TENOR=Os09t0500900-01;KEGG=Os09t0500900-01
Chr09	irgsp1_rep	five_prime_UTR	19386962	19387021	.	-	.	Parent=Os09t0500900-01
Chr09	irgsp1_rep	CDS	19386332	19386961	.	-	0	Parent=Os09t0500900-01
Chr09	irgsp1_rep	CDS	19385707	19385961	.	-	0	Parent=Os09t0500900-01
Chr09	irgsp1_rep	CDS	19384964	19385263	.	-	0	Parent=Os09t0500900-01
Chr09	irgsp1_rep	three_prime_UTR	19384657	19384963	.	-	.	Parent=Os09t0500900-01
Chr09	irgsp1_rep	mRNA	19385044	19386948	.	+	.	ID=Os09t0500966-00;Name=Os09t0500966-00;Locus_id=Os09g0500966;Note=Hypothetical protein.;Transcript_evidence=AK358044 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0500966-00
Chr09	irgsp1_rep	five_prime_UTR	19385044	19385265	.	+	.	Parent=Os09t0500966-00
Chr09	irgsp1_rep	five_prime_UTR	19385713	19385943	.	+	.	Parent=Os09t0500966-00
Chr09	irgsp1_rep	five_prime_UTR	19386319	19386626	.	+	.	Parent=Os09t0500966-00
Chr09	irgsp1_rep	CDS	19386627	19386948	.	+	0	Parent=Os09t0500966-00
Chr09	irgsp1_rep	mRNA	19395898	19396896	.	+	.	ID=Os09t0501100-00;Name=Os09t0501100-00;Locus_id=Os09g0501100;Oryzabase Gene Name Synonym(s)=Ribosomal protein L32;Note=Protein of unknown function DUF568 domain containing protein.;Transcript_evidence=EU965208 (DDBJ);ORF_evidence=B6UBU0 (UniProt);InterPro=DOMON domain (IPR005018),Uncharacterised conserved protein UCP037471 (IPR017214);Oryzabase=17675;TENOR=Os09t0501100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	19395898	19396773	.	+	0	Parent=Os09t0501100-00
Chr09	irgsp1_rep	three_prime_UTR	19396774	19396896	.	+	.	Parent=Os09t0501100-00
Chr09	irgsp1_rep	mRNA	19399076	19400863	.	-	.	ID=Os09t0501150-00;Name=Os09t0501150-00;Locus_id=Os09g0501150;Note=Conserved hypothetical protein.;Transcript_evidence=BT016923 (DDBJ);ORF_evidence=C4J108 (UniProt);TENOR=Os09t0501150-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	19400802	19400863	.	-	.	Parent=Os09t0501150-00
Chr09	irgsp1_rep	CDS	19400607	19400801	.	-	0	Parent=Os09t0501150-00
Chr09	irgsp1_rep	CDS	19400083	19400257	.	-	0	Parent=Os09t0501150-00
Chr09	irgsp1_rep	CDS	19399163	19399170	.	-	2	Parent=Os09t0501150-00
Chr09	irgsp1_rep	three_prime_UTR	19399076	19399162	.	-	.	Parent=Os09t0501150-00
Chr09	irgsp1_rep	mRNA	19398925	19401028	.	+	.	ID=Os09t0501200-01;Name=Os09t0501200-01;Locus_id=Os09g0501200;Oryzabase Gene Symbol Synonym(s)=rpL32_9.1;Note=Similar to Ribosomal L32.;Transcript_evidence=AK099282 (DDBJ%2C Best hit),AK063752 (DDBJ%2C Best hit);ORF_evidence=Q3MST7 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L32e (IPR001515);NIAS_FLcDNA=J023130H04,001-121-A02;Oryzabase=12432;TENOR=Os09t0501200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	19398925	19398979	.	+	.	Parent=Os09t0501200-01
Chr09	irgsp1_rep	CDS	19399078	19399167	.	+	0	Parent=Os09t0501200-01
Chr09	irgsp1_rep	CDS	19400081	19400262	.	+	0	Parent=Os09t0501200-01
Chr09	irgsp1_rep	CDS	19400612	19400741	.	+	1	Parent=Os09t0501200-01
Chr09	irgsp1_rep	three_prime_UTR	19400742	19401028	.	+	.	Parent=Os09t0501200-01
Chr09	irgsp1_rep	mRNA	19406212	19408388	.	-	.	ID=Os09t0501600-01;Name=Os09t0501600-01;Locus_id=Os09g0501600;Oryzabase Gene Symbol Synonym(s)=OsbHLH092;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 092;Note=Similar to MYC1.;Transcript_evidence=AK059036 (DDBJ%2C Best hit);ORF_evidence=NP_001151910.1 (RefSeq);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=001-021-C10;Oryzabase=15379;Expression=AK059036;TENOR=Os09t0501600-01;KEGG=Os09t0501600-01
Chr09	irgsp1_rep	five_prime_UTR	19408268	19408388	.	-	.	Parent=Os09t0501600-01
Chr09	irgsp1_rep	CDS	19407914	19408267	.	-	0	Parent=Os09t0501600-01
Chr09	irgsp1_rep	CDS	19407606	19407821	.	-	0	Parent=Os09t0501600-01
Chr09	irgsp1_rep	CDS	19407452	19407517	.	-	0	Parent=Os09t0501600-01
Chr09	irgsp1_rep	CDS	19407289	19407357	.	-	0	Parent=Os09t0501600-01
Chr09	irgsp1_rep	CDS	19407131	19407205	.	-	0	Parent=Os09t0501600-01
Chr09	irgsp1_rep	CDS	19406851	19407045	.	-	0	Parent=Os09t0501600-01
Chr09	irgsp1_rep	CDS	19406670	19406754	.	-	0	Parent=Os09t0501600-01
Chr09	irgsp1_rep	CDS	19406544	19406584	.	-	2	Parent=Os09t0501600-01
Chr09	irgsp1_rep	three_prime_UTR	19406212	19406543	.	-	.	Parent=Os09t0501600-01
Chr09	irgsp1_rep	mRNA	19406216	19408268	.	+	.	ID=Os09t0501650-00;Name=Os09t0501650-00;Locus_id=Os09g0501650;Note=Hypothetical protein.;Transcript_evidence=tplb0045a15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0501650-00
Chr09	irgsp1_rep	five_prime_UTR	19406216	19406728	.	+	.	Parent=Os09t0501650-00
Chr09	irgsp1_rep	five_prime_UTR	19406823	19407039	.	+	.	Parent=Os09t0501650-00
Chr09	irgsp1_rep	five_prime_UTR	19407125	19407205	.	+	.	Parent=Os09t0501650-00
Chr09	irgsp1_rep	five_prime_UTR	19407289	19407355	.	+	.	Parent=Os09t0501650-00
Chr09	irgsp1_rep	five_prime_UTR	19407450	19407515	.	+	.	Parent=Os09t0501650-00
Chr09	irgsp1_rep	five_prime_UTR	19407604	19407694	.	+	.	Parent=Os09t0501650-00
Chr09	irgsp1_rep	CDS	19407695	19407797	.	+	0	Parent=Os09t0501650-00
Chr09	irgsp1_rep	CDS	19407904	19408256	.	+	2	Parent=Os09t0501650-00
Chr09	irgsp1_rep	three_prime_UTR	19408257	19408268	.	+	.	Parent=Os09t0501650-00
Chr09	irgsp1_rep	mRNA	19413412	19414815	.	-	.	ID=Os09t0501700-00;Name=Os09t0501700-00;Locus_id=Os09g0501700;Oryzabase Gene Symbol Synonym(s)=rpL32_9.2;Note=Ribosomal protein L32e family protein.;Transcript_evidence=BT084505 (DDBJ);ORF_evidence=Q3MST7 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L32e (IPR001515);Oryzabase=12433;TENOR=Os09t0501700-00;KEGG=Os09t0501700-00
Chr09	irgsp1_rep	CDS	19414705	19414815	.	-	0	Parent=Os09t0501700-00
Chr09	irgsp1_rep	CDS	19414511	19414600	.	-	0	Parent=Os09t0501700-00
Chr09	irgsp1_rep	CDS	19413669	19413850	.	-	0	Parent=Os09t0501700-00
Chr09	irgsp1_rep	CDS	19413413	19413542	.	-	1	Parent=Os09t0501700-00
Chr09	irgsp1_rep	three_prime_UTR	19413412	19413412	.	-	.	Parent=Os09t0501700-00
Chr09	irgsp1_rep	mRNA	19413415	19414602	.	+	.	ID=Os09t0501825-00;Name=Os09t0501825-00;Locus_id=Os09g0501825;Note=Conserved hypothetical protein.;Transcript_evidence=BT016923 (DDBJ);ORF_evidence=C4J108 (UniProt);TENOR=Os09t0501825-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	19413415	19413436	.	+	.	Parent=Os09t0501825-00
Chr09	irgsp1_rep	CDS	19413437	19413535	.	+	0	Parent=Os09t0501825-00
Chr09	irgsp1_rep	CDS	19413661	19413684	.	+	0	Parent=Os09t0501825-00
Chr09	irgsp1_rep	three_prime_UTR	19413685	19413856	.	+	.	Parent=Os09t0501825-00
Chr09	irgsp1_rep	three_prime_UTR	19414517	19414602	.	+	.	Parent=Os09t0501825-00
Chr09	irgsp1_rep	mRNA	19415497	19417999	.	-	.	ID=Os09t0501850-01;Name=Os09t0501850-01;Locus_id=Os09g0501850;Oryzabase Gene Symbol Synonym(s)=OsFKBP15-1;Oryzabase Gene Name Synonym(s)=FK506 binding protein 15-1;Note=Similar to FK506-binding protein 2-1 precursor (EC 5.2.1.8) (Peptidyl-prolyl cis- trans isomerase) (PPIase) (Rotamase) (15 kDa FKBP) (FKBP-15-1).;Transcript_evidence=AK063115 (DDBJ%2C Best hit);ORF_evidence=B6SYF5 (UniProt);GO=Biological Process: protein folding (GO:0006457);InterPro=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type%2C domain (IPR001179),Peptidyl-prolyl cis-trans isomerase%2C FKBP-type (IPR023566);NIAS_FLcDNA=001-111-D12;Oryzabase=10026;TENOR=Os09t0501850-01;KEGG=Os09t0501850-01 (EC:5.2.1.8)
Chr09	irgsp1_rep	five_prime_UTR	19417965	19417999	.	-	.	Parent=Os09t0501850-01
Chr09	irgsp1_rep	CDS	19417910	19417964	.	-	0	Parent=Os09t0501850-01
Chr09	irgsp1_rep	CDS	19417751	19417806	.	-	2	Parent=Os09t0501850-01
Chr09	irgsp1_rep	CDS	19416405	19416467	.	-	0	Parent=Os09t0501850-01
Chr09	irgsp1_rep	CDS	19416211	19416301	.	-	0	Parent=Os09t0501850-01
Chr09	irgsp1_rep	CDS	19415998	19416102	.	-	2	Parent=Os09t0501850-01
Chr09	irgsp1_rep	CDS	19415673	19415767	.	-	2	Parent=Os09t0501850-01
Chr09	irgsp1_rep	three_prime_UTR	19415497	19415672	.	-	.	Parent=Os09t0501850-01
Chr09	irgsp1_rep	mRNA	19418967	19421062	.	-	.	ID=Os09t0502000-01;Name=Os09t0502000-01;Locus_id=Os09g0502000;Oryzabase Gene Symbol Synonym(s)=rpL32_9.3%2C RPL32%2C OsrpL32_9.3%2C OsRPL32;Oryzabase Gene Name Synonym(s)=ribosomal protein L32;Note=Similar to Ribosomal L32.;Transcript_evidence=AK120524 (DDBJ%2C Best hit);ORF_evidence=Q3MST7 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L32e (IPR001515);NIAS_FLcDNA=J013126M04;Oryzabase=12434;TENOR=Os09t0502000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	19421040	19421062	.	-	.	Parent=Os09t0502000-01
Chr09	irgsp1_rep	CDS	19420858	19420947	.	-	0	Parent=Os09t0502000-01
Chr09	irgsp1_rep	CDS	19419467	19419648	.	-	0	Parent=Os09t0502000-01
Chr09	irgsp1_rep	CDS	19419198	19419327	.	-	1	Parent=Os09t0502000-01
Chr09	irgsp1_rep	three_prime_UTR	19418967	19419197	.	-	.	Parent=Os09t0502000-01
Chr09	irgsp1_rep	mRNA	19419194	19420949	.	+	.	ID=Os09t0502033-00;Name=Os09t0502033-00;Locus_id=Os09g0502033;Note=Conserved hypothetical protein.;Transcript_evidence=BT016923 (DDBJ);ORF_evidence=C4J108 (UniProt);TENOR=Os09t0502033-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	19419194	19419320	.	+	.	Parent=Os09t0502033-00
Chr09	irgsp1_rep	five_prime_UTR	19419457	19419486	.	+	.	Parent=Os09t0502033-00
Chr09	irgsp1_rep	CDS	19419487	19419646	.	+	0	Parent=Os09t0502033-00
Chr09	irgsp1_rep	CDS	19420849	19420850	.	+	2	Parent=Os09t0502033-00
Chr09	irgsp1_rep	three_prime_UTR	19420851	19420949	.	+	.	Parent=Os09t0502033-00
Chr09	irgsp1_rep	mRNA	19425079	19430998	.	-	.	ID=Os09t0502100-01;Name=Os09t0502100-01;Locus_id=Os09g0502100;RAP-DB Gene Symbol Synonym(s)=LGD1%2C LGD1.1;RAP-DB Gene Name Synonym(s)=LAGGING GROWTH AND DEVELOPMENT 1;CGSNL Gene Symbol=LGD1;CGSNL Gene Name=LAGGING GROWTH AND DEVELOPMENT 1;Note=Von Willebrand factor type A (VWA) domain containing protein%2C RNA binding protein%2C Regulation of vegetative growth and development;Transcript_evidence=HQ586050 (Tainung 67);ORF_evidence=H2B9Y0;Manual Curation=March 9%2C 2015;Literature_PMID=22409537;Oryzabase=8865;TENOR=Os09t0502100-00
Chr09	irgsp1_rep	five_prime_UTR	19430846	19430998	.	-	.	Parent=Os09t0502100-01
Chr09	irgsp1_rep	CDS	19430629	19430845	.	-	0	Parent=Os09t0502100-01
Chr09	irgsp1_rep	CDS	19430439	19430537	.	-	2	Parent=Os09t0502100-01
Chr09	irgsp1_rep	CDS	19428367	19428471	.	-	2	Parent=Os09t0502100-01
Chr09	irgsp1_rep	CDS	19427081	19428280	.	-	2	Parent=Os09t0502100-01
Chr09	irgsp1_rep	CDS	19425281	19426398	.	-	2	Parent=Os09t0502100-01
Chr09	irgsp1_rep	three_prime_UTR	19425079	19425280	.	-	.	Parent=Os09t0502100-01
Chr09	irgsp1_rep	mRNA	19425079	19430588	.	-	.	ID=Os09t0502100-02;Name=Os09t0502100-02;Locus_id=Os09g0502100;RAP-DB Gene Symbol Synonym(s)=LGD1%2C LGD1.2;RAP-DB Gene Name Synonym(s)=LAGGING GROWTH AND DEVELOPMENT 1;CGSNL Gene Symbol=LGD1;CGSNL Gene Name=LAGGING GROWTH AND DEVELOPMENT 1;Note=VWA domain containing protein%2C RNA binding protein%2C Regulation of vegetative growth and development;Transcript_evidence=HQ586051 (Tainung 67);ORF_evidence=H2B9Y1;Manual Curation=March 9%2C 2015;Literature_PMID=22409537;Oryzabase=8865
Chr09	irgsp1_rep	five_prime_UTR	19430439	19430588	.	-	.	Parent=Os09t0502100-02
Chr09	irgsp1_rep	five_prime_UTR	19428367	19428471	.	-	.	Parent=Os09t0502100-02
Chr09	irgsp1_rep	five_prime_UTR	19428093	19428280	.	-	.	Parent=Os09t0502100-02
Chr09	irgsp1_rep	CDS	19427081	19428092	.	-	0	Parent=Os09t0502100-02
Chr09	irgsp1_rep	CDS	19425281	19426398	.	-	2	Parent=Os09t0502100-02
Chr09	irgsp1_rep	three_prime_UTR	19425079	19425280	.	-	.	Parent=Os09t0502100-02
Chr09	irgsp1_rep	mRNA	19425079	19429926	.	-	.	ID=Os09t0502100-03;Name=Os09t0502100-03;Locus_id=Os09g0502100;RAP-DB Gene Symbol Synonym(s)=LGD1%2C LGD1.3;RAP-DB Gene Name Synonym(s)=LAGGING GROWTH AND DEVELOPMENT 1;CGSNL Gene Symbol=LGD1;CGSNL Gene Name=LAGGING GROWTH AND DEVELOPMENT 1;Note=VWA domain containing protein%2C RNA binding protein%2C Regulation of vegetative growth and development;Transcript_evidence=HQ586052 (Tainung 67);ORF_evidence=H2B9Y1;Manual Curation=March 9%2C 2015;Literature_PMID=22409537;Oryzabase=8865
Chr09	irgsp1_rep	five_prime_UTR	19429627	19429926	.	-	.	Parent=Os09t0502100-03
Chr09	irgsp1_rep	five_prime_UTR	19428367	19428471	.	-	.	Parent=Os09t0502100-03
Chr09	irgsp1_rep	five_prime_UTR	19428093	19428280	.	-	.	Parent=Os09t0502100-03
Chr09	irgsp1_rep	CDS	19427081	19428092	.	-	0	Parent=Os09t0502100-03
Chr09	irgsp1_rep	CDS	19425281	19426398	.	-	2	Parent=Os09t0502100-03
Chr09	irgsp1_rep	three_prime_UTR	19425079	19425280	.	-	.	Parent=Os09t0502100-03
Chr09	irgsp1_rep	mRNA	19425079	19429791	.	-	.	ID=Os09t0502100-04;Name=Os09t0502100-04;Locus_id=Os09g0502100;RAP-DB Gene Symbol Synonym(s)=LGD1%2C LGD1.4;RAP-DB Gene Name Synonym(s)=LAGGING GROWTH AND DEVELOPMENT 1;CGSNL Gene Symbol=LGD1;CGSNL Gene Name=LAGGING GROWTH AND DEVELOPMENT 1;Note=VWA domain containing protein%2C RNA binding protein%2C Regulation of vegetative growth and development;Transcript_evidence=HQ586053 (Tainung 67);ORF_evidence=H2B9Y1;Manual Curation=March 9%2C 2015;Literature_PMID=22409537;Oryzabase=8865
Chr09	irgsp1_rep	five_prime_UTR	19429627	19429791	.	-	.	Parent=Os09t0502100-04
Chr09	irgsp1_rep	five_prime_UTR	19428367	19428471	.	-	.	Parent=Os09t0502100-04
Chr09	irgsp1_rep	five_prime_UTR	19428093	19428280	.	-	.	Parent=Os09t0502100-04
Chr09	irgsp1_rep	CDS	19427081	19428092	.	-	0	Parent=Os09t0502100-04
Chr09	irgsp1_rep	CDS	19425281	19426398	.	-	2	Parent=Os09t0502100-04
Chr09	irgsp1_rep	three_prime_UTR	19425079	19425280	.	-	.	Parent=Os09t0502100-04
Chr09	irgsp1_rep	mRNA	19425079	19427603	.	-	.	ID=Os09t0502100-05;Name=Os09t0502100-05;Locus_id=Os09g0502100;RAP-DB Gene Symbol Synonym(s)=LGD1%2C LGD1.5;RAP-DB Gene Name Synonym(s)=LAGGING GROWTH AND DEVELOPMENT 1;CGSNL Gene Symbol=LGD1;CGSNL Gene Name=LAGGING GROWTH AND DEVELOPMENT 1;Note=VWA domain containing protein%2C RNA binding protein%2C Regulation of vegetative growth and development;Transcript_evidence=HQ586054 (Tainung 67);ORF_evidence=H2B9Y4;Manual Curation=March 9%2C 2015;Literature_PMID=22409537;Oryzabase=8865
Chr09	irgsp1_rep	five_prime_UTR	19427535	19427603	.	-	.	Parent=Os09t0502100-05
Chr09	irgsp1_rep	CDS	19427081	19427534	.	-	0	Parent=Os09t0502100-05
Chr09	irgsp1_rep	CDS	19425281	19426398	.	-	2	Parent=Os09t0502100-05
Chr09	irgsp1_rep	three_prime_UTR	19425079	19425280	.	-	.	Parent=Os09t0502100-05
Chr09	irgsp1_rep	mRNA	19425079	19425976	.	-	.	ID=Os09t0502100-06;Name=Os09t0502100-06;Locus_id=Os09g0502100;RAP-DB Gene Symbol Synonym(s)=LGD1%2C LGD1.6;RAP-DB Gene Name Synonym(s)=LAGGING GROWTH AND DEVELOPMENT 1;CGSNL Gene Symbol=LGD1;CGSNL Gene Name=LAGGING GROWTH AND DEVELOPMENT 1;Note=VWA domain containing protein%2C RNA binding protein%2C Regulation of vegetative growth and development;Transcript_evidence=HQ586055 (Tainung 67);ORF_evidence=H2B9Y5;Manual Curation=March 9%2C 2015;Literature_PMID=22409537;Oryzabase=8865
Chr09	irgsp1_rep	five_prime_UTR	19425965	19425976	.	-	.	Parent=Os09t0502100-06
Chr09	irgsp1_rep	CDS	19425281	19425964	.	-	0	Parent=Os09t0502100-06
Chr09	irgsp1_rep	three_prime_UTR	19425079	19425280	.	-	.	Parent=Os09t0502100-06
Chr09	irgsp1_rep	mRNA	19426159	19428375	.	+	.	ID=Os09t0502150-00;Name=Os09t0502150-00;Locus_id=Os09g0502150;Note=Non-protein coding transcript.;Transcript_evidence=AK366046 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0502150-00
Chr09	irgsp1_rep	exon	19426159	19426456	.	+	.	Parent=Os09t0502150-00
Chr09	irgsp1_rep	exon	19427153	19427373	.	+	.	Parent=Os09t0502150-00
Chr09	irgsp1_rep	exon	19427434	19428375	.	+	.	Parent=Os09t0502150-00
Chr09	irgsp1_rep	mRNA	19433960	19437709	.	-	.	ID=Os09t0502200-01;Name=Os09t0502200-01;Locus_id=Os09g0502200;Oryzabase Gene Symbol Synonym(s)=OsA6;Oryzabase Gene Name Synonym(s)=O-Glycosyl hydrolases family 17 protein;Note=Similar to Beta-1%2C3-glucanase (Fragment).;Transcript_evidence=AK121879 (DDBJ%2C Best hit),AK102600 (DDBJ%2C Best hit);ORF_evidence=NP_001149815.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J033104L11,J033098L04;Oryzabase=22839;Expression=AK121879;TENOR=Os09t0502200-01;KEGG=Os09t0502200-01
Chr09	irgsp1_rep	five_prime_UTR	19437672	19437709	.	-	.	Parent=Os09t0502200-01
Chr09	irgsp1_rep	CDS	19437620	19437671	.	-	0	Parent=Os09t0502200-01
Chr09	irgsp1_rep	CDS	19436178	19437530	.	-	2	Parent=Os09t0502200-01
Chr09	irgsp1_rep	CDS	19434183	19434220	.	-	2	Parent=Os09t0502200-01
Chr09	irgsp1_rep	three_prime_UTR	19433960	19434182	.	-	.	Parent=Os09t0502200-01
Chr09	irgsp1_rep	mRNA	19439486	19439794	.	-	.	ID=Os09t0502350-00;Name=Os09t0502350-00;Locus_id=Os09g0502350;Note=Non-protein coding transcript.;Transcript_evidence=CT835856 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os09t0502350-00
Chr09	irgsp1_rep	exon	19439486	19439794	.	-	.	Parent=Os09t0502350-00
Chr09	irgsp1_rep	mRNA	19443222	19444839	.	+	.	ID=Os09t0502500-01;Name=Os09t0502500-01;Locus_id=Os09g0502500;Note=Alcohol dehydrogenase superfamily%2C zinc-containing protein.;Transcript_evidence=AK109664 (DDBJ%2C Best hit);ORF_evidence=NP_001149412.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),GroES-like (IPR011032),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=002-144-E03;Expression=AK109664;TENOR=Os09t0502500-01;KEGG=Os09t0502500-01
Chr09	irgsp1_rep	five_prime_UTR	19443222	19443330	.	+	.	Parent=Os09t0502500-01
Chr09	irgsp1_rep	CDS	19443331	19443402	.	+	0	Parent=Os09t0502500-01
Chr09	irgsp1_rep	CDS	19443515	19443656	.	+	0	Parent=Os09t0502500-01
Chr09	irgsp1_rep	CDS	19443769	19443857	.	+	2	Parent=Os09t0502500-01
Chr09	irgsp1_rep	CDS	19443954	19444673	.	+	0	Parent=Os09t0502500-01
Chr09	irgsp1_rep	three_prime_UTR	19444674	19444839	.	+	.	Parent=Os09t0502500-01
Chr09	irgsp1_rep	mRNA	19445273	19448189	.	+	.	ID=Os09t0502566-01;Name=Os09t0502566-01;Locus_id=Os09g0502566;Note=Hypothetical gene.;Transcript_evidence=AK240928 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065040I06;TENOR=Os09t0502566-01;KEGG=Os09t0502566-01
Chr09	irgsp1_rep	five_prime_UTR	19445273	19445878	.	+	.	Parent=Os09t0502566-01
Chr09	irgsp1_rep	five_prime_UTR	19445972	19446124	.	+	.	Parent=Os09t0502566-01
Chr09	irgsp1_rep	five_prime_UTR	19446222	19447035	.	+	.	Parent=Os09t0502566-01
Chr09	irgsp1_rep	CDS	19447036	19447040	.	+	0	Parent=Os09t0502566-01
Chr09	irgsp1_rep	CDS	19447433	19447539	.	+	1	Parent=Os09t0502566-01
Chr09	irgsp1_rep	CDS	19447841	19448031	.	+	2	Parent=Os09t0502566-01
Chr09	irgsp1_rep	three_prime_UTR	19448032	19448189	.	+	.	Parent=Os09t0502566-01
Chr09	irgsp1_rep	mRNA	19445501	19447913	.	-	.	ID=Os09t0502600-00;Name=Os09t0502600-00;Locus_id=Os09g0502600;Oryzabase Gene Symbol Synonym(s)=Os_F0710;Note=Similar to OSIGBa0158F13.3 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01K44 (UniProt);Oryzabase=17532;TENOR=Os09t0502600-00;KEGG=Os09t0502600-00
Chr09	irgsp1_rep	CDS	19447799	19447913	.	-	0	Parent=Os09t0502600-00
Chr09	irgsp1_rep	CDS	19447433	19447539	.	-	2	Parent=Os09t0502600-00
Chr09	irgsp1_rep	CDS	19446222	19447040	.	-	0	Parent=Os09t0502600-00
Chr09	irgsp1_rep	CDS	19445987	19446124	.	-	0	Parent=Os09t0502600-00
Chr09	irgsp1_rep	CDS	19445501	19445878	.	-	0	Parent=Os09t0502600-00
Chr09	irgsp1_rep	mRNA	19455725	19456210	.	-	.	ID=Os09t0502800-00;Name=Os09t0502800-00;Locus_id=Os09g0502800;Oryzabase Gene Symbol Synonym(s)=OsFbox495%2C Os_F0522;Oryzabase Gene Name Synonym(s)=F-box protein 495;Note=Similar to OSIGBa0158F13.2 protein.;Transcript_evidence=EU605839 (DDBJ%2C Best hit);ORF_evidence=Q01K45 (UniProt);Oryzabase=17265;TENOR=Os09t0502800-00
Chr09	irgsp1_rep	five_prime_UTR	19456209	19456210	.	-	.	Parent=Os09t0502800-00
Chr09	irgsp1_rep	CDS	19455725	19456208	.	-	0	Parent=Os09t0502800-00
Chr09	irgsp1_rep	mRNA	19459316	19461698	.	-	.	ID=Os09t0502900-00;Name=Os09t0502900-00;Locus_id=Os09g0502900;Oryzabase Gene Symbol Synonym(s)=Os_F0789;Note=Similar to OSIGBa0158F13.3 protein.;Transcript_evidence=AK250033 (DDBJ);ORF_evidence=Q01K44 (UniProt);Oryzabase=17533;TENOR=Os09t0502900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	19461420	19461698	.	-	0	Parent=Os09t0502900-00
Chr09	irgsp1_rep	CDS	19459994	19460812	.	-	0	Parent=Os09t0502900-00
Chr09	irgsp1_rep	CDS	19459741	19459893	.	-	0	Parent=Os09t0502900-00
Chr09	irgsp1_rep	CDS	19459316	19459648	.	-	0	Parent=Os09t0502900-00
Chr09	irgsp1_rep	mRNA	19465332	19466054	.	-	.	ID=Os09t0502950-00;Name=Os09t0502950-00;Locus_id=Os09g0502950;Note=Hypothetical gene.;Transcript_evidence=EU945918 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0502950-00;KEGG=Os09t0502950-00
Chr09	irgsp1_rep	five_prime_UTR	19466053	19466054	.	-	.	Parent=Os09t0502950-00
Chr09	irgsp1_rep	CDS	19465483	19466052	.	-	0	Parent=Os09t0502950-00
Chr09	irgsp1_rep	three_prime_UTR	19465332	19465482	.	-	.	Parent=Os09t0502950-00
Chr09	irgsp1_rep	mRNA	19465674	19466294	.	+	.	ID=Os09t0503000-01;Name=Os09t0503000-01;Locus_id=Os09g0503000;Note=Alcohol dehydrogenase superfamily%2C zinc-containing protein.;Transcript_evidence=AK109203 (DDBJ%2C Best hit);ORF_evidence=NP_001149412.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),Alcohol dehydrogenase%2C C-terminal (IPR013149),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=002-156-C05;Expression=AK109203;TENOR=Os09t0503000-01;KEGG=Os09t0503000-01
Chr09	irgsp1_rep	five_prime_UTR	19465674	19465674	.	+	.	Parent=Os09t0503000-01
Chr09	irgsp1_rep	CDS	19465675	19466169	.	+	0	Parent=Os09t0503000-01
Chr09	irgsp1_rep	three_prime_UTR	19466170	19466294	.	+	.	Parent=Os09t0503000-01
Chr09	irgsp1_rep	mRNA	19468899	19471622	.	+	.	ID=Os09t0503100-01;Name=Os09t0503100-01;Locus_id=Os09g0503100;Note=Similar to Quinone-oxidoreductase QR1 (Fragment).;Transcript_evidence=AK108272 (DDBJ%2C Best hit);ORF_evidence=NP_001148214.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=002-141-C04;Expression=AK108272;TENOR=Os09t0503100-01;KEGG=Os09t0503100-01
Chr09	irgsp1_rep	five_prime_UTR	19468899	19468923	.	+	.	Parent=Os09t0503100-01
Chr09	irgsp1_rep	CDS	19468924	19469007	.	+	0	Parent=Os09t0503100-01
Chr09	irgsp1_rep	CDS	19469124	19469265	.	+	0	Parent=Os09t0503100-01
Chr09	irgsp1_rep	CDS	19470360	19470448	.	+	2	Parent=Os09t0503100-01
Chr09	irgsp1_rep	CDS	19470746	19471471	.	+	0	Parent=Os09t0503100-01
Chr09	irgsp1_rep	three_prime_UTR	19471472	19471622	.	+	.	Parent=Os09t0503100-01
Chr09	irgsp1_rep	mRNA	19470355	19471320	.	-	.	ID=Os09t0503250-00;Name=Os09t0503250-00;Locus_id=Os09g0503250;Note=Hypothetical gene.;Transcript_evidence=EU945918 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0503250-00;KEGG=Os09t0503250-00
Chr09	irgsp1_rep	CDS	19471081	19471320	.	-	0	Parent=Os09t0503250-00
Chr09	irgsp1_rep	three_prime_UTR	19470667	19471080	.	-	.	Parent=Os09t0503250-00
Chr09	irgsp1_rep	three_prime_UTR	19470355	19470456	.	-	.	Parent=Os09t0503250-00
Chr09	irgsp1_rep	mRNA	19472475	19477139	.	+	.	ID=Os09t0503400-01;Name=Os09t0503400-01;Locus_id=Os09g0503400;Note=Leucyl-tRNA synthetase%2C class Ia%2C archaeal/eukaryotic cytosolic domain containing protein.;Transcript_evidence=AK100624 (DDBJ%2C Best hit),AK099796 (DDBJ%2C Best hit);ORF_evidence=XP_002892512.1 (RefSeq);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: leucyl-tRNA aminoacylation (GO:0006429),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: leucine-tRNA ligase activity (GO:0004823),Molecular Function: ATP binding (GO:0005524);InterPro=Aminoacyl-tRNA synthetase%2C class Ia (IPR002300),Leucyl-tRNA synthetase%2C class Ia%2C archaeal/eukaryotic cytosolic (IPR004493),Valyl/Leucyl/Isoleucyl-tRNA synthetase%2C class Ia%2C editing domain (IPR009008),Aminoacyl-tRNA synthetase%2C class 1a%2C anticodon-binding (IPR009080),Valyl/Leucyl/Isoleucyl-tRNA synthetase%2C class I%2C anticodon-binding (IPR013155),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J023108I24,J013097H06;Expression=AK100624;TENOR=Os09t0503400-01;KEGG=Os09t0503400-01 (EC:6.1.1.4)
Chr09	irgsp1_rep	five_prime_UTR	19472475	19472608	.	+	.	Parent=Os09t0503400-01
Chr09	irgsp1_rep	five_prime_UTR	19473607	19473610	.	+	.	Parent=Os09t0503400-01
Chr09	irgsp1_rep	CDS	19473611	19476898	.	+	0	Parent=Os09t0503400-01
Chr09	irgsp1_rep	three_prime_UTR	19476899	19477139	.	+	.	Parent=Os09t0503400-01
Chr09	irgsp1_rep	mRNA	19475692	19477125	.	+	.	ID=Os09t0503400-02;Name=Os09t0503400-02;Locus_id=Os09g0503400;Note=Valyl/Leucyl/Isoleucyl-tRNA synthetase%2C class I%2C anticodon-binding domain containing protein.;Transcript_evidence=AK062108 (DDBJ%2C Best hit);ORF_evidence=XP_002892512.1 (RefSeq);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: ATP binding (GO:0005524);InterPro=Aminoacyl-tRNA synthetase%2C class 1a%2C anticodon-binding (IPR009080),Valyl/Leucyl/Isoleucyl-tRNA synthetase%2C class I%2C anticodon-binding (IPR013155),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Aminoacyl-tRNA synthetase%2C class I (M) (IPR015413);NIAS_FLcDNA=001-045-B04;TENOR=Os09t0503400-02;KEGG=Os09t0503400-02 (EC:6.1.1.4)
Chr09	irgsp1_rep	five_prime_UTR	19475692	19475692	.	+	.	Parent=Os09t0503400-02
Chr09	irgsp1_rep	CDS	19475693	19476898	.	+	0	Parent=Os09t0503400-02
Chr09	irgsp1_rep	three_prime_UTR	19476899	19477125	.	+	.	Parent=Os09t0503400-02
Chr09	irgsp1_rep	mRNA	19478653	19482090	.	-	.	ID=Os09t0503700-01;Name=Os09t0503700-01;Locus_id=Os09g0503700;Note=Leucine-rich repeat 2 containing protein.;Transcript_evidence=AK068071 (DDBJ%2C Best hit);ORF_evidence=A2Z2U3 (UniProt);NIAS_FLcDNA=J013135E16;Expression=AK068071;TENOR=Os09t0503700-01;KEGG=Os09t0503700-01
Chr09	irgsp1_rep	five_prime_UTR	19481935	19482090	.	-	.	Parent=Os09t0503700-01
Chr09	irgsp1_rep	CDS	19481913	19481934	.	-	0	Parent=Os09t0503700-01
Chr09	irgsp1_rep	CDS	19481457	19481560	.	-	2	Parent=Os09t0503700-01
Chr09	irgsp1_rep	CDS	19479908	19480510	.	-	0	Parent=Os09t0503700-01
Chr09	irgsp1_rep	three_prime_UTR	19479663	19479907	.	-	.	Parent=Os09t0503700-01
Chr09	irgsp1_rep	three_prime_UTR	19479392	19479535	.	-	.	Parent=Os09t0503700-01
Chr09	irgsp1_rep	three_prime_UTR	19478653	19479278	.	-	.	Parent=Os09t0503700-01
Chr09	irgsp1_rep	mRNA	19486193	19488085	.	+	.	ID=Os09t0503850-00;Name=Os09t0503850-00;Locus_id=Os09g0503850;Note=Hypothetical protein.;Transcript_evidence=tplb0035b24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0503850-00
Chr09	irgsp1_rep	five_prime_UTR	19486193	19487114	.	+	.	Parent=Os09t0503850-00
Chr09	irgsp1_rep	CDS	19487115	19487357	.	+	0	Parent=Os09t0503850-00
Chr09	irgsp1_rep	three_prime_UTR	19487358	19488085	.	+	.	Parent=Os09t0503850-00
Chr09	irgsp1_rep	mRNA	19486207	19488095	.	-	.	ID=Os09t0504000-01;Name=Os09t0504000-01;Locus_id=Os09g0504000;Oryzabase Gene Symbol Synonym(s)=OsUGlcAE4;Oryzabase Gene Name Synonym(s)=UDP-glucuronic acid 4-epimerase 4;Note=Similar to Nucleotide sugar epimerase-like protein (UDP-D-glucuronate 4- epimerase) (EC 5.1.3.6).;Transcript_evidence=AK068607 (DDBJ%2C Best hit);ORF_evidence=NP_001147328.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: racemase and epimerase activity%2C acting on carbohydrates and derivatives (GO:0016857),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),Nucleotide sugar epimerase (IPR008089),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013157O06;Oryzabase=15785;Expression=AK068607;TENOR=Os09t0504000-01;KEGG=Os09t0504000-01 (EC:5.1.3.6)
Chr09	irgsp1_rep	five_prime_UTR	19487999	19488095	.	-	.	Parent=Os09t0504000-01
Chr09	irgsp1_rep	CDS	19486502	19487998	.	-	0	Parent=Os09t0504000-01
Chr09	irgsp1_rep	three_prime_UTR	19486207	19486501	.	-	.	Parent=Os09t0504000-01
Chr09	irgsp1_rep	mRNA	19498962	19503132	.	+	.	ID=Os09t0504400-01;Name=Os09t0504400-01;Locus_id=Os09g0504400;Oryzabase Gene Symbol Synonym(s)=OsCycC_1%2C CycC_1;Oryzabase Gene Name Synonym(s)=C-type cyclin%2C cyclin C;Note=Transcription regulator cyclin domain containing protein.;Transcript_evidence=AK072415 (DDBJ%2C Best hit);ORF_evidence=B6U610 (UniProt);GO=Biological Process: regulation of cyclin-dependent protein kinase activity (GO:0000079),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: regulation of cell cycle (GO:0051726),Cellular Component: DNA-directed RNA polymerase II%2C holoenzyme (GO:0016591),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763),Cyclin C/H/T/L (IPR015429),Cyclin C/H (IPR023598);NIAS_FLcDNA=J023082B16;Oryzabase=13768;TENOR=Os09t0504400-01;KEGG=Os09t0504400-01
Chr09	irgsp1_rep	five_prime_UTR	19498962	19499073	.	+	.	Parent=Os09t0504400-01
Chr09	irgsp1_rep	CDS	19499074	19499105	.	+	0	Parent=Os09t0504400-01
Chr09	irgsp1_rep	CDS	19499236	19499342	.	+	1	Parent=Os09t0504400-01
Chr09	irgsp1_rep	CDS	19500082	19500121	.	+	2	Parent=Os09t0504400-01
Chr09	irgsp1_rep	CDS	19500756	19500800	.	+	1	Parent=Os09t0504400-01
Chr09	irgsp1_rep	CDS	19501513	19501634	.	+	1	Parent=Os09t0504400-01
Chr09	irgsp1_rep	CDS	19501727	19501841	.	+	2	Parent=Os09t0504400-01
Chr09	irgsp1_rep	CDS	19501969	19502013	.	+	1	Parent=Os09t0504400-01
Chr09	irgsp1_rep	CDS	19502409	19502556	.	+	1	Parent=Os09t0504400-01
Chr09	irgsp1_rep	CDS	19502661	19502780	.	+	0	Parent=Os09t0504400-01
Chr09	irgsp1_rep	three_prime_UTR	19502781	19503132	.	+	.	Parent=Os09t0504400-01
Chr09	irgsp1_rep	mRNA	19503411	19506985	.	-	.	ID=Os09t0504700-01;Name=Os09t0504700-01;Locus_id=Os09g0504700;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK288807 (DDBJ%2C Best hit);ORF_evidence=NP_001148999.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J090071L24;TENOR=Os09t0504700-01;KEGG=Os09t0504700-01
Chr09	irgsp1_rep	five_prime_UTR	19506084	19506985	.	-	.	Parent=Os09t0504700-01
Chr09	irgsp1_rep	CDS	19505868	19506083	.	-	0	Parent=Os09t0504700-01
Chr09	irgsp1_rep	CDS	19505543	19505612	.	-	0	Parent=Os09t0504700-01
Chr09	irgsp1_rep	CDS	19505272	19505345	.	-	2	Parent=Os09t0504700-01
Chr09	irgsp1_rep	CDS	19503919	19504134	.	-	0	Parent=Os09t0504700-01
Chr09	irgsp1_rep	three_prime_UTR	19503918	19503918	.	-	.	Parent=Os09t0504700-01
Chr09	irgsp1_rep	three_prime_UTR	19503411	19503786	.	-	.	Parent=Os09t0504700-01
Chr09	irgsp1_rep	mRNA	19503401	19506977	.	-	.	ID=Os09t0504700-02;Name=Os09t0504700-02;Locus_id=Os09g0504700;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK073887 (DDBJ%2C Best hit);ORF_evidence=NP_001148999.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J033075P09;TENOR=Os09t0504700-02;KEGG=Os09t0504700-02
Chr09	irgsp1_rep	five_prime_UTR	19506844	19506977	.	-	.	Parent=Os09t0504700-02
Chr09	irgsp1_rep	five_prime_UTR	19506084	19506128	.	-	.	Parent=Os09t0504700-02
Chr09	irgsp1_rep	CDS	19505868	19506083	.	-	0	Parent=Os09t0504700-02
Chr09	irgsp1_rep	CDS	19505543	19505612	.	-	0	Parent=Os09t0504700-02
Chr09	irgsp1_rep	CDS	19505272	19505345	.	-	2	Parent=Os09t0504700-02
Chr09	irgsp1_rep	CDS	19503919	19504134	.	-	0	Parent=Os09t0504700-02
Chr09	irgsp1_rep	three_prime_UTR	19503918	19503918	.	-	.	Parent=Os09t0504700-02
Chr09	irgsp1_rep	three_prime_UTR	19503401	19503786	.	-	.	Parent=Os09t0504700-02
Chr09	irgsp1_rep	mRNA	19503401	19506088	.	-	.	ID=Os09t0504700-03;Name=Os09t0504700-03;Locus_id=Os09g0504700;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK104052 (DDBJ%2C Best hit);ORF_evidence=NP_001148999.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=001-023-C12;TENOR=Os09t0504700-03
Chr09	irgsp1_rep	five_prime_UTR	19506084	19506088	.	-	.	Parent=Os09t0504700-03
Chr09	irgsp1_rep	CDS	19505868	19506083	.	-	0	Parent=Os09t0504700-03
Chr09	irgsp1_rep	CDS	19505543	19505612	.	-	0	Parent=Os09t0504700-03
Chr09	irgsp1_rep	CDS	19505272	19505345	.	-	2	Parent=Os09t0504700-03
Chr09	irgsp1_rep	CDS	19503919	19504134	.	-	0	Parent=Os09t0504700-03
Chr09	irgsp1_rep	three_prime_UTR	19503918	19503918	.	-	.	Parent=Os09t0504700-03
Chr09	irgsp1_rep	three_prime_UTR	19503401	19503786	.	-	.	Parent=Os09t0504700-03
Chr09	irgsp1_rep	mRNA	19507194	19509152	.	+	.	ID=Os09t0504800-01;Name=Os09t0504800-01;Locus_id=Os09g0504800;Note=tRNA-splicing endonuclease%2C subunit Sen54%2C N-terminal domain containing protein.;Transcript_evidence=AK073194 (DDBJ%2C Best hit);ORF_evidence=B8BDA6 (UniProt);InterPro=tRNA-splicing endonuclease%2C subunit Sen54%2C N-terminal (IPR024336);NIAS_FLcDNA=J033023G15;Expression=AK073194;TENOR=Os09t0504800-01;KEGG=Os09t0504800-01
Chr09	irgsp1_rep	five_prime_UTR	19507194	19507212	.	+	.	Parent=Os09t0504800-01
Chr09	irgsp1_rep	CDS	19507213	19507376	.	+	0	Parent=Os09t0504800-01
Chr09	irgsp1_rep	CDS	19507443	19507574	.	+	1	Parent=Os09t0504800-01
Chr09	irgsp1_rep	CDS	19507784	19508191	.	+	1	Parent=Os09t0504800-01
Chr09	irgsp1_rep	CDS	19508848	19508986	.	+	1	Parent=Os09t0504800-01
Chr09	irgsp1_rep	three_prime_UTR	19508987	19509152	.	+	.	Parent=Os09t0504800-01
Chr09	irgsp1_rep	mRNA	19509236	19512670	.	-	.	ID=Os09t0504900-01;Name=Os09t0504900-01;Locus_id=Os09g0504900;Note=Conserved hypothetical protein.;Transcript_evidence=AK099899 (DDBJ%2C Best hit);ORF_evidence=B8BDA7 (UniProt);NIAS_FLcDNA=J013114B09;Expression=AK099899;TENOR=Os09t0504900-01;KEGG=Os09t0504900-01
Chr09	irgsp1_rep	five_prime_UTR	19512614	19512670	.	-	.	Parent=Os09t0504900-01
Chr09	irgsp1_rep	CDS	19512324	19512613	.	-	0	Parent=Os09t0504900-01
Chr09	irgsp1_rep	CDS	19512121	19512196	.	-	1	Parent=Os09t0504900-01
Chr09	irgsp1_rep	CDS	19511653	19511681	.	-	0	Parent=Os09t0504900-01
Chr09	irgsp1_rep	CDS	19511318	19511411	.	-	1	Parent=Os09t0504900-01
Chr09	irgsp1_rep	CDS	19511095	19511184	.	-	0	Parent=Os09t0504900-01
Chr09	irgsp1_rep	CDS	19510744	19510930	.	-	0	Parent=Os09t0504900-01
Chr09	irgsp1_rep	CDS	19509584	19510101	.	-	2	Parent=Os09t0504900-01
Chr09	irgsp1_rep	three_prime_UTR	19509236	19509583	.	-	.	Parent=Os09t0504900-01
Chr09	irgsp1_rep	mRNA	19519267	19520097	.	-	.	ID=Os09t0505000-00;Name=Os09t0505000-00;Locus_id=Os09g0505000;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=CT835820 (DDBJ%2C Best hit);ORF_evidence=NP_001175930.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);TENOR=Os09t0505000-00;KEGG=Os09t0505000-00
Chr09	irgsp1_rep	five_prime_UTR	19520043	19520097	.	-	.	Parent=Os09t0505000-00
Chr09	irgsp1_rep	CDS	19519398	19520042	.	-	0	Parent=Os09t0505000-00
Chr09	irgsp1_rep	three_prime_UTR	19519267	19519397	.	-	.	Parent=Os09t0505000-00
Chr09	irgsp1_rep	mRNA	19522173	19527787	.	-	.	ID=Os09t0505100-01;Name=Os09t0505100-01;Locus_id=Os09g0505100;CGSNL Gene Symbol=UBP1-9;CGSNL Gene Name=UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-9;Oryzabase Gene Symbol Synonym(s)=OsUBP1-9%2C OsUBP1%2C UBP1;Oryzabase Gene Name Synonym(s)=ubiquitin-specific processing protease 1-9%2C Ubiquitin-specific protease 1;Note=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 family protein.;Transcript_evidence=AK067621 (DDBJ%2C Best hit);ORF_evidence=A2Z2V5 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Molecular Function: ubiquitin thiolesterase activity (GO:0004221),Molecular Function: zinc ion binding (GO:0008270);InterPro=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (IPR001394),Zinc finger%2C UBP-type (IPR001607),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2%2C conserved site (IPR018200);NIAS_FLcDNA=J013108A13;Oryzabase=22870;Expression=AK067621;TENOR=Os09t0505100-01;KEGG=Os09t0505100-01
Chr09	irgsp1_rep	five_prime_UTR	19527599	19527787	.	-	.	Parent=Os09t0505100-01
Chr09	irgsp1_rep	five_prime_UTR	19527290	19527315	.	-	.	Parent=Os09t0505100-01
Chr09	irgsp1_rep	CDS	19524363	19527289	.	-	0	Parent=Os09t0505100-01
Chr09	irgsp1_rep	CDS	19522681	19522921	.	-	1	Parent=Os09t0505100-01
Chr09	irgsp1_rep	three_prime_UTR	19522173	19522680	.	-	.	Parent=Os09t0505100-01
Chr09	irgsp1_rep	mRNA	19537058	19540626	.	+	.	ID=Os09t0505200-00;Name=Os09t0505200-00;Locus_id=Os09g0505200;Note=Forkhead-associated (FHA) domain domain containing protein.;Transcript_evidence=AK354207 (DDBJ);ORF_evidence=A2Z2V6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Forkhead-associated (FHA) domain (IPR000253),SMAD/FHA domain (IPR008984);TENOR=Os09t0505200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	19537058	19537706	.	+	0	Parent=Os09t0505200-00
Chr09	irgsp1_rep	CDS	19539165	19539319	.	+	2	Parent=Os09t0505200-00
Chr09	irgsp1_rep	CDS	19540415	19540618	.	+	0	Parent=Os09t0505200-00
Chr09	irgsp1_rep	three_prime_UTR	19540619	19540626	.	+	.	Parent=Os09t0505200-00
Chr09	irgsp1_rep	mRNA	19541754	19545082	.	-	.	ID=Os09t0505300-01;Name=Os09t0505300-01;Locus_id=Os09g0505300;Oryzabase Gene Name Synonym(s)=acyIACP thioesterase;Note=Similar to Br FatA1.;Transcript_evidence=AK061352 (DDBJ%2C Best hit);ORF_evidence=Q8L6B1 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Molecular Function: thiolester hydrolase activity (GO:0016790);InterPro=Acyl-ACP thioesterase (IPR002864);NIAS_FLcDNA=006-303-G03;Oryzabase=21585;Expression=AK061352;TENOR=Os09t0505300-01;KEGG=Os09t0505300-01 (EC:3.1.2.-%2C EC:3.1.2.14)
Chr09	irgsp1_rep	five_prime_UTR	19545082	19545082	.	-	.	Parent=Os09t0505300-01
Chr09	irgsp1_rep	CDS	19545007	19545081	.	-	0	Parent=Os09t0505300-01
Chr09	irgsp1_rep	CDS	19543847	19543980	.	-	0	Parent=Os09t0505300-01
Chr09	irgsp1_rep	CDS	19543645	19543758	.	-	1	Parent=Os09t0505300-01
Chr09	irgsp1_rep	CDS	19543005	19543100	.	-	1	Parent=Os09t0505300-01
Chr09	irgsp1_rep	CDS	19542613	19542700	.	-	1	Parent=Os09t0505300-01
Chr09	irgsp1_rep	CDS	19542461	19542529	.	-	0	Parent=Os09t0505300-01
Chr09	irgsp1_rep	CDS	19542046	19542300	.	-	0	Parent=Os09t0505300-01
Chr09	irgsp1_rep	three_prime_UTR	19541754	19542045	.	-	.	Parent=Os09t0505300-01
Chr09	irgsp1_rep	mRNA	19550069	19552454	.	-	.	ID=Os09t0505400-00;Name=Os09t0505400-00;Locus_id=Os09g0505400;CGSNL Gene Symbol=PIN5C;CGSNL Gene Name=PIN PROTEIN 5C;Oryzabase Gene Symbol Synonym(s)=PIN5B%2C OsPIN5b%2C OsPIN5c;Oryzabase Gene Name Synonym(s)=PIN PROTEIN 5B;Note=Hypothetical conserved gene.;Transcript_evidence=EU957827 (DDBJ);ORF_evidence=D5A7J3 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Auxin efflux carrier (IPR004776);Oryzabase=8963;TENOR=Os09t0505400-00;KEGG=Os09t0505400-00
Chr09	irgsp1_rep	CDS	19551664	19552454	.	-	0	Parent=Os09t0505400-00
Chr09	irgsp1_rep	CDS	19550811	19550896	.	-	1	Parent=Os09t0505400-00
Chr09	irgsp1_rep	CDS	19550069	19550436	.	-	2	Parent=Os09t0505400-00
Chr09	irgsp1_rep	mRNA	19562287	19565726	.	+	.	ID=Os09t0505600-01;Name=Os09t0505600-01;Locus_id=Os09g0505600;Oryzabase Gene Symbol Synonym(s)=OsPBF1;Oryzabase Gene Name Synonym(s)=beta-6 subunit of 20 S proteasome%2C 20 S proteasome beta-6 subunit%2C 20S proteasome beta6 subunit;Note=Proteasome subunit beta type 1 (EC 3.4.25.1) (20S proteasome alpha subunit F) (20S proteasome subunit beta-6).;Transcript_evidence=AK103136 (DDBJ%2C Best hit),AK060884 (DDBJ%2C Best hit);ORF_evidence=O64464 (UniProt);GO=Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603),Cellular Component: proteasome core complex (GO:0005839),Molecular Function: endopeptidase activity (GO:0004175),Molecular Function: threonine-type endopeptidase activity (GO:0004298);InterPro=Proteasome%2C subunit alpha/beta (IPR001353),Proteasome%2C beta-type subunit%2C conserved site (IPR016050),Proteasome B-type subunit (IPR023333);NIAS_FLcDNA=J033120E09,001-035-B03;Oryzabase=14095;TENOR=Os09t0505600-01
Chr09	irgsp1_rep	five_prime_UTR	19562287	19562386	.	+	.	Parent=Os09t0505600-01
Chr09	irgsp1_rep	CDS	19562387	19562427	.	+	0	Parent=Os09t0505600-01
Chr09	irgsp1_rep	CDS	19562525	19562632	.	+	1	Parent=Os09t0505600-01
Chr09	irgsp1_rep	CDS	19564109	19564190	.	+	1	Parent=Os09t0505600-01
Chr09	irgsp1_rep	CDS	19564632	19564761	.	+	0	Parent=Os09t0505600-01
Chr09	irgsp1_rep	CDS	19564877	19565019	.	+	2	Parent=Os09t0505600-01
Chr09	irgsp1_rep	CDS	19565193	19565279	.	+	0	Parent=Os09t0505600-01
Chr09	irgsp1_rep	CDS	19565379	19565453	.	+	0	Parent=Os09t0505600-01
Chr09	irgsp1_rep	three_prime_UTR	19565454	19565726	.	+	.	Parent=Os09t0505600-01
Chr09	irgsp1_rep	mRNA	19566172	19568826	.	+	.	ID=Os09t0505700-01;Name=Os09t0505700-01;Locus_id=Os09g0505700;Oryzabase Gene Name Synonym(s)=cyt-RPEase%2C cytosolic RPEase%2C cytosolic D-Ribulose-5-phosphate 3-Epimerase;Note=Aldolase-type TIM barrel domain containing protein.;Transcript_evidence=AK061034 (DDBJ%2C Best hit);ORF_evidence=A2Z2W0 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ribulose-phosphate 3-epimerase activity (GO:0004750);InterPro=Ribulose-phosphate 3-epimerase (IPR000056),Ribulose-phosphate binding barrel (IPR011060),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=006-205-A08;Oryzabase=19596;Expression=AK061034;TENOR=Os09t0505700-01;KEGG=Os09t0505700-01 (EC:5.1.3.1)
Chr09	irgsp1_rep	five_prime_UTR	19566172	19566260	.	+	.	Parent=Os09t0505700-01
Chr09	irgsp1_rep	CDS	19566261	19566383	.	+	0	Parent=Os09t0505700-01
Chr09	irgsp1_rep	CDS	19566901	19566905	.	+	0	Parent=Os09t0505700-01
Chr09	irgsp1_rep	CDS	19567000	19567062	.	+	1	Parent=Os09t0505700-01
Chr09	irgsp1_rep	CDS	19567145	19567251	.	+	1	Parent=Os09t0505700-01
Chr09	irgsp1_rep	CDS	19567316	19567413	.	+	2	Parent=Os09t0505700-01
Chr09	irgsp1_rep	CDS	19568134	19568157	.	+	0	Parent=Os09t0505700-01
Chr09	irgsp1_rep	CDS	19568274	19568315	.	+	0	Parent=Os09t0505700-01
Chr09	irgsp1_rep	CDS	19568459	19568614	.	+	0	Parent=Os09t0505700-01
Chr09	irgsp1_rep	three_prime_UTR	19568615	19568826	.	+	.	Parent=Os09t0505700-01
Chr09	irgsp1_rep	mRNA	19566193	19568821	.	+	.	ID=Os09t0505700-02;Name=Os09t0505700-02;Locus_id=Os09g0505700;Oryzabase Gene Name Synonym(s)=cyt-RPEase%2C cytosolic RPEase%2C cytosolic D-Ribulose-5-phosphate 3-Epimerase;Note=Ribulose-phosphate 3-epimerase%2C cytoplasmic isoform (EC 5.1.3.1) (Ribulose-5-phosphate-epimerase) (Cyt-RPEase) (RPEcyt) (Pentose-5- phosphate 3-epimerase) (PPE).;Transcript_evidence=AK069451 (DDBJ%2C Best hit);ORF_evidence=A2Z2W0 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ribulose-phosphate 3-epimerase activity (GO:0004750);InterPro=Ribulose-phosphate 3-epimerase (IPR000056),Ribulose-phosphate binding barrel (IPR011060),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J023020B16;Oryzabase=19596;Expression=AK069451;TENOR=Os09t0505700-02;KEGG=Os09t0505700-02 (EC:5.1.3.1)
Chr09	irgsp1_rep	five_prime_UTR	19566193	19566260	.	+	.	Parent=Os09t0505700-02
Chr09	irgsp1_rep	CDS	19566261	19566383	.	+	0	Parent=Os09t0505700-02
Chr09	irgsp1_rep	CDS	19566901	19566905	.	+	0	Parent=Os09t0505700-02
Chr09	irgsp1_rep	CDS	19567000	19567062	.	+	1	Parent=Os09t0505700-02
Chr09	irgsp1_rep	CDS	19567145	19567251	.	+	1	Parent=Os09t0505700-02
Chr09	irgsp1_rep	CDS	19567316	19567413	.	+	2	Parent=Os09t0505700-02
Chr09	irgsp1_rep	CDS	19568065	19568157	.	+	0	Parent=Os09t0505700-02
Chr09	irgsp1_rep	CDS	19568274	19568315	.	+	0	Parent=Os09t0505700-02
Chr09	irgsp1_rep	CDS	19568459	19568614	.	+	0	Parent=Os09t0505700-02
Chr09	irgsp1_rep	three_prime_UTR	19568615	19568821	.	+	.	Parent=Os09t0505700-02
Chr09	irgsp1_rep	mRNA	19570053	19575434	.	+	.	ID=Os09t0505800-01;Name=Os09t0505800-01;Locus_id=Os09g0505800;Note=Similar to Uridine kinase-like protein.;Transcript_evidence=AK102065 (DDBJ%2C Best hit);ORF_evidence=A2Z2W1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: ATP binding (GO:0005524),Molecular Function: kinase activity (GO:0016301),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Uridine kinase (IPR000764),Phosphoribulokinase/uridine kinase (IPR006083);NIAS_FLcDNA=J033082E21;Expression=AK102065;TENOR=Os09t0505800-01;KEGG=Os09t0505800-01 (EC:2.7.1.48)
Chr09	irgsp1_rep	five_prime_UTR	19570053	19570123	.	+	.	Parent=Os09t0505800-01
Chr09	irgsp1_rep	CDS	19570124	19570358	.	+	0	Parent=Os09t0505800-01
Chr09	irgsp1_rep	CDS	19570448	19570539	.	+	2	Parent=Os09t0505800-01
Chr09	irgsp1_rep	CDS	19571435	19571504	.	+	0	Parent=Os09t0505800-01
Chr09	irgsp1_rep	CDS	19571612	19571730	.	+	2	Parent=Os09t0505800-01
Chr09	irgsp1_rep	CDS	19572021	19572117	.	+	0	Parent=Os09t0505800-01
Chr09	irgsp1_rep	CDS	19572224	19572303	.	+	2	Parent=Os09t0505800-01
Chr09	irgsp1_rep	CDS	19572438	19572632	.	+	0	Parent=Os09t0505800-01
Chr09	irgsp1_rep	CDS	19572722	19572805	.	+	0	Parent=Os09t0505800-01
Chr09	irgsp1_rep	CDS	19572926	19572986	.	+	0	Parent=Os09t0505800-01
Chr09	irgsp1_rep	CDS	19573677	19573737	.	+	2	Parent=Os09t0505800-01
Chr09	irgsp1_rep	CDS	19574157	19574250	.	+	1	Parent=Os09t0505800-01
Chr09	irgsp1_rep	CDS	19574352	19574424	.	+	0	Parent=Os09t0505800-01
Chr09	irgsp1_rep	CDS	19574829	19574911	.	+	2	Parent=Os09t0505800-01
Chr09	irgsp1_rep	CDS	19575003	19575149	.	+	0	Parent=Os09t0505800-01
Chr09	irgsp1_rep	three_prime_UTR	19575150	19575434	.	+	.	Parent=Os09t0505800-01
Chr09	irgsp1_rep	mRNA	19572019	19575158	.	-	.	ID=Os09t0505850-00;Name=Os09t0505850-00;Locus_id=Os09g0505850;Note=Hypothetical protein.;Transcript_evidence=tplb0046c01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0505850-00
Chr09	irgsp1_rep	five_prime_UTR	19575001	19575158	.	-	.	Parent=Os09t0505850-00
Chr09	irgsp1_rep	five_prime_UTR	19574834	19574907	.	-	.	Parent=Os09t0505850-00
Chr09	irgsp1_rep	five_prime_UTR	19574261	19574337	.	-	.	Parent=Os09t0505850-00
Chr09	irgsp1_rep	CDS	19574138	19574260	.	-	0	Parent=Os09t0505850-00
Chr09	irgsp1_rep	CDS	19572922	19573023	.	-	0	Parent=Os09t0505850-00
Chr09	irgsp1_rep	three_prime_UTR	19572848	19572921	.	-	.	Parent=Os09t0505850-00
Chr09	irgsp1_rep	three_prime_UTR	19572405	19572647	.	-	.	Parent=Os09t0505850-00
Chr09	irgsp1_rep	three_prime_UTR	19572019	19572158	.	-	.	Parent=Os09t0505850-00
Chr09	irgsp1_rep	mRNA	19577312	19581043	.	+	.	ID=Os09t0505900-00;Name=Os09t0505900-00;Locus_id=Os09g0505900;CGSNL Gene Symbol=PAP27C;CGSNL Gene Name=PURPLE ACID PHOSPHATASE 27C;Oryzabase Gene Symbol Synonym(s)=OsPAP27c;Oryzabase Gene Name Synonym(s)=purple acid phosphatase 27c;Note=Similar to ATPAP27/PAP27.;Transcript_evidence=AK252672 (DDBJ);ORF_evidence=XP_002865799.1 (RefSeq);GO=Molecular Function: acid phosphatase activity (GO:0003993),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: metal ion binding (GO:0046872);InterPro=Metallophosphoesterase domain (IPR004843),Purple acid phosphatase-like%2C N-terminal (IPR008963),Purple acid phosphatase%2C N-terminal (IPR015914);Oryzabase=11396;TENOR=Os09t0505900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	19577312	19577579	.	+	0	Parent=Os09t0505900-00
Chr09	irgsp1_rep	CDS	19577663	19577751	.	+	2	Parent=Os09t0505900-00
Chr09	irgsp1_rep	CDS	19577879	19577953	.	+	0	Parent=Os09t0505900-00
Chr09	irgsp1_rep	CDS	19578388	19578507	.	+	0	Parent=Os09t0505900-00
Chr09	irgsp1_rep	CDS	19578633	19578725	.	+	0	Parent=Os09t0505900-00
Chr09	irgsp1_rep	CDS	19578790	19578928	.	+	0	Parent=Os09t0505900-00
Chr09	irgsp1_rep	CDS	19579055	19579136	.	+	2	Parent=Os09t0505900-00
Chr09	irgsp1_rep	CDS	19579224	19579356	.	+	1	Parent=Os09t0505900-00
Chr09	irgsp1_rep	CDS	19580019	19580651	.	+	0	Parent=Os09t0505900-00
Chr09	irgsp1_rep	CDS	19580711	19581043	.	+	0	Parent=Os09t0505900-00
Chr09	irgsp1_rep	mRNA	19579224	19581012	.	-	.	ID=Os09t0505950-00;Name=Os09t0505950-00;Locus_id=Os09g0505950;Note=Non-protein coding transcript.;Transcript_evidence=tplb0049m13 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os09t0505950-00
Chr09	irgsp1_rep	exon	19580017	19581012	.	-	.	Parent=Os09t0505950-00
Chr09	irgsp1_rep	exon	19579224	19579353	.	-	.	Parent=Os09t0505950-00
Chr09	irgsp1_rep	mRNA	19581491	19586210	.	-	.	ID=Os09t0506000-01;Name=Os09t0506000-01;Locus_id=Os09g0506000;RAP-DB Gene Symbol Synonym(s)=PAP27A%2C OsPAP27a%2C NPP6%2C OsNPP6;RAP-DB Gene Name Synonym(s)=PURPLE ACID PHOSPHATASE 27A%2C purple acid phosphatase 27a%2C Nucleotide pyrophosphatase/phosphodiesterase 6;CGSNL Gene Symbol=PAP27A;CGSNL Gene Name=PURPLE ACID PHOSPHATASE 27A;Oryzabase Gene Symbol Synonym(s)=OsPAP27a%2C NPP6%2C OsNPP6;Oryzabase Gene Name Synonym(s)=purple acid phosphatase 27a%2C Nucleotide pyrophosphatase/phosphodiesterase 6;Note=Nucleotide pyrophosphatase/phosphodiesterase;Transcript_evidence=AK106533,AK102346;ORF_evidence=Q0J0L3;GO=Molecular Function: acid phosphatase activity (GO:0003993),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: metal ion binding (GO:0046872);InterPro=Purple acid phosphatase-like%2C N-terminal (IPR008963),Purple acid phosphatase%2C N-terminal (IPR015914),Metallo-dependent phosphatase-like (IPR029052),Calcineurin-like phosphoesterase domain%2C apaH type (IPR004843),Iron/zinc purple acid phosphatase-like C-terminal domain (IPR025733);NIAS_FLcDNA=002-108-A11, J033091C10;Manual Curation=August 5%2C 2016;Literature_PMID=27335351;Oryzabase=11395;TENOR=Os09t0506000-01
Chr09	irgsp1_rep	five_prime_UTR	19585939	19586210	.	-	.	Parent=Os09t0506000-01
Chr09	irgsp1_rep	CDS	19585714	19585938	.	-	0	Parent=Os09t0506000-01
Chr09	irgsp1_rep	CDS	19584776	19584867	.	-	0	Parent=Os09t0506000-01
Chr09	irgsp1_rep	CDS	19584589	19584655	.	-	1	Parent=Os09t0506000-01
Chr09	irgsp1_rep	CDS	19584386	19584505	.	-	0	Parent=Os09t0506000-01
Chr09	irgsp1_rep	CDS	19584182	19584274	.	-	0	Parent=Os09t0506000-01
Chr09	irgsp1_rep	CDS	19583901	19584030	.	-	0	Parent=Os09t0506000-01
Chr09	irgsp1_rep	CDS	19583627	19583708	.	-	2	Parent=Os09t0506000-01
Chr09	irgsp1_rep	CDS	19583412	19583544	.	-	1	Parent=Os09t0506000-01
Chr09	irgsp1_rep	CDS	19583011	19583216	.	-	0	Parent=Os09t0506000-01
Chr09	irgsp1_rep	CDS	19582786	19582911	.	-	1	Parent=Os09t0506000-01
Chr09	irgsp1_rep	CDS	19581648	19582266	.	-	1	Parent=Os09t0506000-01
Chr09	irgsp1_rep	three_prime_UTR	19581491	19581647	.	-	.	Parent=Os09t0506000-01
Chr09	irgsp1_rep	mRNA	19582059	19585973	.	-	.	ID=Os09t0506000-02;Name=Os09t0506000-02;Locus_id=Os09g0506000;CGSNL Gene Symbol=PAP27A;CGSNL Gene Name=PURPLE ACID PHOSPHATASE 27A;Oryzabase Gene Symbol Synonym(s)=OsPAP27a%2C NPP6%2C OsNPP6;Oryzabase Gene Name Synonym(s)=purple acid phosphatase 27a%2C Nucleotide pyrophosphatase/phosphodiesterase 6;Note=Similar to Nucleotide pyrophosphatase/phosphodiesterase.;Transcript_evidence=AK073281 (DDBJ%2C Best hit);ORF_evidence=B6SWL1 (UniProt);GO=Molecular Function: acid phosphatase activity (GO:0003993),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: metal ion binding (GO:0046872);InterPro=Metallophosphoesterase domain (IPR004843),Purple acid phosphatase-like%2C N-terminal (IPR008963),Purple acid phosphatase%2C N-terminal (IPR015914);NIAS_FLcDNA=J033028M10;Oryzabase=11395;Expression=AK073281;TENOR=Os09t0506000-02;KEGG=Os09t0506000-02
Chr09	irgsp1_rep	five_prime_UTR	19585939	19585973	.	-	.	Parent=Os09t0506000-02
Chr09	irgsp1_rep	CDS	19585714	19585938	.	-	0	Parent=Os09t0506000-02
Chr09	irgsp1_rep	CDS	19584776	19584867	.	-	0	Parent=Os09t0506000-02
Chr09	irgsp1_rep	CDS	19584589	19584655	.	-	1	Parent=Os09t0506000-02
Chr09	irgsp1_rep	CDS	19584386	19584505	.	-	0	Parent=Os09t0506000-02
Chr09	irgsp1_rep	CDS	19584182	19584274	.	-	0	Parent=Os09t0506000-02
Chr09	irgsp1_rep	CDS	19583901	19584030	.	-	0	Parent=Os09t0506000-02
Chr09	irgsp1_rep	CDS	19583627	19583708	.	-	2	Parent=Os09t0506000-02
Chr09	irgsp1_rep	CDS	19583412	19583544	.	-	1	Parent=Os09t0506000-02
Chr09	irgsp1_rep	CDS	19583011	19583216	.	-	0	Parent=Os09t0506000-02
Chr09	irgsp1_rep	CDS	19582786	19582911	.	-	1	Parent=Os09t0506000-02
Chr09	irgsp1_rep	CDS	19582059	19582266	.	-	1	Parent=Os09t0506000-02
Chr09	irgsp1_rep	mRNA	19581493	19584869	.	-	.	ID=Os09t0506000-03;Name=Os09t0506000-03;Locus_id=Os09g0506000;CGSNL Gene Symbol=PAP27A;CGSNL Gene Name=PURPLE ACID PHOSPHATASE 27A;Oryzabase Gene Symbol Synonym(s)=OsPAP27a%2C NPP6%2C OsNPP6;Oryzabase Gene Name Synonym(s)=purple acid phosphatase 27a%2C Nucleotide pyrophosphatase/phosphodiesterase 6;Note=Similar to Nucleotide pyrophosphatase/phosphodiesterase.;Transcript_evidence=AK073291 (DDBJ%2C Best hit);ORF_evidence=B6SWL1 (UniProt);GO=Molecular Function: acid phosphatase activity (GO:0003993),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: metal ion binding (GO:0046872);InterPro=Metallophosphoesterase domain (IPR004843),Purple acid phosphatase-like%2C N-terminal (IPR008963),Purple acid phosphatase%2C N-terminal (IPR015914);NIAS_FLcDNA=J033024B14;Oryzabase=11395;Expression=AK073291;TENOR=Os09t0506000-03;KEGG=Os09t0506000-03
Chr09	irgsp1_rep	five_prime_UTR	19584868	19584869	.	-	.	Parent=Os09t0506000-03
Chr09	irgsp1_rep	CDS	19584776	19584867	.	-	0	Parent=Os09t0506000-03
Chr09	irgsp1_rep	CDS	19584589	19584655	.	-	1	Parent=Os09t0506000-03
Chr09	irgsp1_rep	CDS	19584386	19584505	.	-	0	Parent=Os09t0506000-03
Chr09	irgsp1_rep	CDS	19584182	19584274	.	-	0	Parent=Os09t0506000-03
Chr09	irgsp1_rep	CDS	19583901	19584030	.	-	0	Parent=Os09t0506000-03
Chr09	irgsp1_rep	CDS	19583627	19583708	.	-	2	Parent=Os09t0506000-03
Chr09	irgsp1_rep	CDS	19583412	19583544	.	-	1	Parent=Os09t0506000-03
Chr09	irgsp1_rep	CDS	19583011	19583216	.	-	0	Parent=Os09t0506000-03
Chr09	irgsp1_rep	CDS	19582786	19582911	.	-	1	Parent=Os09t0506000-03
Chr09	irgsp1_rep	CDS	19581648	19582266	.	-	1	Parent=Os09t0506000-03
Chr09	irgsp1_rep	three_prime_UTR	19581493	19581647	.	-	.	Parent=Os09t0506000-03
Chr09	irgsp1_rep	mRNA	19581665	19584032	.	+	.	ID=Os09t0506150-00;Name=Os09t0506150-00;Locus_id=Os09g0506150;Note=Hypothetical protein.;Transcript_evidence=tplb0025g01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0506150-00
Chr09	irgsp1_rep	five_prime_UTR	19581665	19581665	.	+	.	Parent=Os09t0506150-00
Chr09	irgsp1_rep	CDS	19581666	19582034	.	+	0	Parent=Os09t0506150-00
Chr09	irgsp1_rep	three_prime_UTR	19582035	19582257	.	+	.	Parent=Os09t0506150-00
Chr09	irgsp1_rep	three_prime_UTR	19582780	19582904	.	+	.	Parent=Os09t0506150-00
Chr09	irgsp1_rep	three_prime_UTR	19583005	19583215	.	+	.	Parent=Os09t0506150-00
Chr09	irgsp1_rep	three_prime_UTR	19583411	19583534	.	+	.	Parent=Os09t0506150-00
Chr09	irgsp1_rep	three_prime_UTR	19583615	19583692	.	+	.	Parent=Os09t0506150-00
Chr09	irgsp1_rep	three_prime_UTR	19583879	19584032	.	+	.	Parent=Os09t0506150-00
Chr09	irgsp1_rep	mRNA	19584771	19585813	.	+	.	ID=Os09t0506301-00;Name=Os09t0506301-00;Locus_id=Os09g0506301;Note=Non-protein coding transcript.;Transcript_evidence=BT086968 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0506301-00
Chr09	irgsp1_rep	exon	19584771	19584856	.	+	.	Parent=Os09t0506301-00
Chr09	irgsp1_rep	exon	19585703	19585813	.	+	.	Parent=Os09t0506301-00
Chr09	irgsp1_rep	mRNA	19596349	19597750	.	+	.	ID=Os09t0506450-00;Name=Os09t0506450-00;Locus_id=Os09g0506450;Oryzabase Gene Symbol Synonym(s)=OsFbox497%2C Os_F0433;Oryzabase Gene Name Synonym(s)=F-box protein 497;Note=Similar to F-box domain containing protein%2C expressed.;Transcript_evidence=tplb0010m22 (Wheat FLcDNA);ORF_evidence=Q10QB2 (UniProt);Oryzabase=17267;TENOR=Os09t0506450-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	19596349	19596543	.	+	.	Parent=Os09t0506450-00
Chr09	irgsp1_rep	CDS	19596544	19597038	.	+	0	Parent=Os09t0506450-00
Chr09	irgsp1_rep	CDS	19597369	19597668	.	+	0	Parent=Os09t0506450-00
Chr09	irgsp1_rep	three_prime_UTR	19597669	19597750	.	+	.	Parent=Os09t0506450-00
Chr09	irgsp1_rep	mRNA	19613507	19619199	.	+	.	ID=Os09t0506700-00;Name=Os09t0506700-00;Locus_id=Os09g0506700;Oryzabase Gene Symbol Synonym(s)=OsFbox498%2C Os_F0145;Oryzabase Gene Name Synonym(s)=F-box protein 498;Note=Similar to F-box domain containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10QB2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17268;TENOR=Os09t0506700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	19613507	19613675	.	+	0	Parent=Os09t0506700-00
Chr09	irgsp1_rep	CDS	19614180	19614268	.	+	2	Parent=Os09t0506700-00
Chr09	irgsp1_rep	CDS	19616339	19617166	.	+	0	Parent=Os09t0506700-00
Chr09	irgsp1_rep	CDS	19617502	19617780	.	+	0	Parent=Os09t0506700-00
Chr09	irgsp1_rep	CDS	19618906	19619199	.	+	0	Parent=Os09t0506700-00
Chr09	irgsp1_rep	mRNA	19620640	19628678	.	+	.	ID=Os09t0506800-01;Name=Os09t0506800-01;Locus_id=Os09g0506800;CGSNL Gene Symbol=PAIR2;CGSNL Gene Name=HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 2;Oryzabase Gene Symbol Synonym(s)=Pair2%2C OsPAIR2%2C OsASY1;Oryzabase Gene Name Synonym(s)=Homologous pairing aberration in rice meiosis 2;Note=Similar to Meiotic asynaptic mutant 1.;Transcript_evidence=AK064028 (DDBJ%2C Best hit);ORF_evidence=Q76CY8 (UniProt);GO=Biological Process: mitosis (GO:0007067);InterPro=DNA-binding HORMA (IPR003511);NIAS_FLcDNA=001-125-B03;Oryzabase=8428;Expression=AK064028;TENOR=Os09t0506800-01;KEGG=Os09t0506800-01
Chr09	irgsp1_rep	five_prime_UTR	19620640	19620741	.	+	.	Parent=Os09t0506800-01
Chr09	irgsp1_rep	CDS	19620742	19620744	.	+	0	Parent=Os09t0506800-01
Chr09	irgsp1_rep	CDS	19620820	19620876	.	+	0	Parent=Os09t0506800-01
Chr09	irgsp1_rep	CDS	19623640	19623736	.	+	0	Parent=Os09t0506800-01
Chr09	irgsp1_rep	CDS	19623829	19623897	.	+	2	Parent=Os09t0506800-01
Chr09	irgsp1_rep	CDS	19623981	19624073	.	+	2	Parent=Os09t0506800-01
Chr09	irgsp1_rep	CDS	19624189	19624312	.	+	2	Parent=Os09t0506800-01
Chr09	irgsp1_rep	CDS	19624899	19624968	.	+	1	Parent=Os09t0506800-01
Chr09	irgsp1_rep	CDS	19625041	19625082	.	+	0	Parent=Os09t0506800-01
Chr09	irgsp1_rep	CDS	19625240	19625368	.	+	0	Parent=Os09t0506800-01
Chr09	irgsp1_rep	CDS	19625463	19625570	.	+	0	Parent=Os09t0506800-01
Chr09	irgsp1_rep	CDS	19625724	19625766	.	+	0	Parent=Os09t0506800-01
Chr09	irgsp1_rep	CDS	19625835	19625873	.	+	2	Parent=Os09t0506800-01
Chr09	irgsp1_rep	CDS	19626071	19626195	.	+	2	Parent=Os09t0506800-01
Chr09	irgsp1_rep	CDS	19626392	19626404	.	+	0	Parent=Os09t0506800-01
Chr09	irgsp1_rep	CDS	19626499	19626569	.	+	2	Parent=Os09t0506800-01
Chr09	irgsp1_rep	CDS	19626661	19626765	.	+	0	Parent=Os09t0506800-01
Chr09	irgsp1_rep	CDS	19626844	19626994	.	+	0	Parent=Os09t0506800-01
Chr09	irgsp1_rep	CDS	19627510	19627595	.	+	2	Parent=Os09t0506800-01
Chr09	irgsp1_rep	CDS	19627703	19627757	.	+	0	Parent=Os09t0506800-01
Chr09	irgsp1_rep	CDS	19627854	19628023	.	+	2	Parent=Os09t0506800-01
Chr09	irgsp1_rep	CDS	19628155	19628268	.	+	0	Parent=Os09t0506800-01
Chr09	irgsp1_rep	CDS	19628387	19628452	.	+	0	Parent=Os09t0506800-01
Chr09	irgsp1_rep	three_prime_UTR	19628453	19628678	.	+	.	Parent=Os09t0506800-01
Chr09	irgsp1_rep	mRNA	19620684	19628678	.	+	.	ID=Os09t0506800-02;Name=Os09t0506800-02;Locus_id=Os09g0506800;CGSNL Gene Symbol=PAIR2;CGSNL Gene Name=HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 2;Oryzabase Gene Symbol Synonym(s)=Pair2%2C OsPAIR2%2C OsASY1;Oryzabase Gene Name Synonym(s)=Homologous pairing aberration in rice meiosis 2;Note=Similar to Essential protein for meiotic synapsis.;Transcript_evidence=AK102636 (DDBJ%2C Best hit);ORF_evidence=Q76CY8 (UniProt);GO=Biological Process: mitosis (GO:0007067);InterPro=DNA-binding HORMA (IPR003511);NIAS_FLcDNA=J033099N16;Oryzabase=8428;Expression=AK102636;TENOR=Os09t0506800-02;KEGG=Os09t0506800-02
Chr09	irgsp1_rep	five_prime_UTR	19620684	19620741	.	+	.	Parent=Os09t0506800-02
Chr09	irgsp1_rep	CDS	19620742	19620744	.	+	0	Parent=Os09t0506800-02
Chr09	irgsp1_rep	CDS	19620820	19620876	.	+	0	Parent=Os09t0506800-02
Chr09	irgsp1_rep	CDS	19623640	19623736	.	+	0	Parent=Os09t0506800-02
Chr09	irgsp1_rep	CDS	19623829	19623897	.	+	2	Parent=Os09t0506800-02
Chr09	irgsp1_rep	CDS	19623981	19624073	.	+	2	Parent=Os09t0506800-02
Chr09	irgsp1_rep	CDS	19624189	19624312	.	+	2	Parent=Os09t0506800-02
Chr09	irgsp1_rep	CDS	19624899	19624968	.	+	1	Parent=Os09t0506800-02
Chr09	irgsp1_rep	CDS	19625041	19625082	.	+	0	Parent=Os09t0506800-02
Chr09	irgsp1_rep	CDS	19625240	19625368	.	+	0	Parent=Os09t0506800-02
Chr09	irgsp1_rep	CDS	19625463	19625570	.	+	0	Parent=Os09t0506800-02
Chr09	irgsp1_rep	CDS	19625724	19625766	.	+	0	Parent=Os09t0506800-02
Chr09	irgsp1_rep	CDS	19625835	19625873	.	+	2	Parent=Os09t0506800-02
Chr09	irgsp1_rep	CDS	19626071	19626195	.	+	2	Parent=Os09t0506800-02
Chr09	irgsp1_rep	CDS	19626392	19626404	.	+	0	Parent=Os09t0506800-02
Chr09	irgsp1_rep	CDS	19626499	19626569	.	+	2	Parent=Os09t0506800-02
Chr09	irgsp1_rep	CDS	19626661	19626765	.	+	0	Parent=Os09t0506800-02
Chr09	irgsp1_rep	CDS	19626844	19626994	.	+	0	Parent=Os09t0506800-02
Chr09	irgsp1_rep	CDS	19627510	19627595	.	+	2	Parent=Os09t0506800-02
Chr09	irgsp1_rep	CDS	19627703	19627757	.	+	0	Parent=Os09t0506800-02
Chr09	irgsp1_rep	CDS	19627854	19628023	.	+	2	Parent=Os09t0506800-02
Chr09	irgsp1_rep	CDS	19628152	19628268	.	+	0	Parent=Os09t0506800-02
Chr09	irgsp1_rep	CDS	19628387	19628452	.	+	0	Parent=Os09t0506800-02
Chr09	irgsp1_rep	three_prime_UTR	19628453	19628678	.	+	.	Parent=Os09t0506800-02
Chr09	irgsp1_rep	mRNA	19630562	19634603	.	+	.	ID=Os09t0506900-01;Name=Os09t0506900-01;Locus_id=Os09g0506900;Note=Conserved hypothetical protein.;Transcript_evidence=AK066669 (DDBJ%2C Best hit);ORF_evidence=A3C0G1 (UniProt);NIAS_FLcDNA=J013073G03;TENOR=Os09t0506900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	19630562	19630655	.	+	.	Parent=Os09t0506900-01
Chr09	irgsp1_rep	CDS	19630656	19630912	.	+	0	Parent=Os09t0506900-01
Chr09	irgsp1_rep	CDS	19631148	19631274	.	+	1	Parent=Os09t0506900-01
Chr09	irgsp1_rep	CDS	19631388	19631766	.	+	0	Parent=Os09t0506900-01
Chr09	irgsp1_rep	CDS	19631852	19631910	.	+	2	Parent=Os09t0506900-01
Chr09	irgsp1_rep	CDS	19632408	19632521	.	+	0	Parent=Os09t0506900-01
Chr09	irgsp1_rep	three_prime_UTR	19632522	19632991	.	+	.	Parent=Os09t0506900-01
Chr09	irgsp1_rep	three_prime_UTR	19633488	19633569	.	+	.	Parent=Os09t0506900-01
Chr09	irgsp1_rep	three_prime_UTR	19633941	19634603	.	+	.	Parent=Os09t0506900-01
Chr09	irgsp1_rep	mRNA	19631608	19634563	.	+	.	ID=Os09t0506900-02;Name=Os09t0506900-02;Locus_id=Os09g0506900;Note=Similar to cDNA clone:J013073G03%2C full insert sequence.;Transcript_evidence=AK059251 (DDBJ%2C Best hit);ORF_evidence=B7ECI1 (UniProt);NIAS_FLcDNA=001-024-H03;Expression=AK059251;TENOR=Os09t0506900-02;KEGG=Os09t0506900-02
Chr09	irgsp1_rep	five_prime_UTR	19631608	19631609	.	+	.	Parent=Os09t0506900-02
Chr09	irgsp1_rep	CDS	19631610	19631766	.	+	0	Parent=Os09t0506900-02
Chr09	irgsp1_rep	CDS	19631852	19631910	.	+	2	Parent=Os09t0506900-02
Chr09	irgsp1_rep	CDS	19632408	19632444	.	+	0	Parent=Os09t0506900-02
Chr09	irgsp1_rep	CDS	19632624	19632991	.	+	2	Parent=Os09t0506900-02
Chr09	irgsp1_rep	CDS	19633488	19633538	.	+	0	Parent=Os09t0506900-02
Chr09	irgsp1_rep	three_prime_UTR	19633539	19633569	.	+	.	Parent=Os09t0506900-02
Chr09	irgsp1_rep	three_prime_UTR	19633941	19634563	.	+	.	Parent=Os09t0506900-02
Chr09	irgsp1_rep	mRNA	19643463	19648233	.	+	.	ID=Os09t0507100-01;Name=Os09t0507100-01;Locus_id=Os09g0507100;RAP-DB Gene Symbol Synonym(s)=OsSPL18;RAP-DB Gene Name Synonym(s)=Squamosa promoter-binding-like protein 18;CGSNL Gene Symbol=SPL18;CGSNL Gene Name=RICE SQUAMOSA PROMOTER-BINDING-LIKE 18;Oryzabase Gene Symbol Synonym(s)=OsSPL18;Oryzabase Gene Name Synonym(s)=Squamosa promoter-binding-like protein 18;Note=Plant-specific transcription factor%2C Regulation of panicle development%2C Control of grain weight and grain number;Transcript_evidence=Q0J0K1 (UniProt);ORF_evidence=Q0J0K1;GO=Molecular Function: DNA binding (GO:0003677),Cellular Component: nucleus (GO:0005634);InterPro=SBP domain superfamily (IPR036893),SBP domain (IPR004333);Manual Curation=February 13%2C 2019;Literature_PMID=30737149,16861571;Oryzabase=11242;TENOR=Os09t0507100-00;Subcellular location=nucleus (GO:0005634)
Chr09	irgsp1_rep	CDS	19643463	19643944	.	+	0	Parent=Os09t0507100-01
Chr09	irgsp1_rep	CDS	19646589	19646719	.	+	1	Parent=Os09t0507100-01
Chr09	irgsp1_rep	CDS	19647428	19648233	.	+	2	Parent=Os09t0507100-01
Chr09	irgsp1_rep	mRNA	19653389	19659765	.	+	.	ID=Os09t0507200-01;Name=Os09t0507200-01;Locus_id=Os09g0507200;CGSNL Gene Symbol=MADS24;CGSNL Gene Name=MADS BOX GENE24;Oryzabase Gene Symbol Synonym(s)=OsMADS24%2C MADS8%2C OsMADS8%2C OsMADS8/24;Oryzabase Gene Name Synonym(s)=MADS box gene24%2C MADS-box protein 24%2C MADS-box transcription factor 8;Note=MADS box protein.;Transcript_evidence=AK072867 (DDBJ%2C Best hit);ORF_evidence=D3U2G8 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box (IPR002100),Transcription factor%2C K-box (IPR002487);NIAS_FLcDNA=J023143P16;Oryzabase=6209;Expression=AK072867;TENOR=Os09t0507200-01;KEGG=Os09t0507200-01
Chr09	irgsp1_rep	five_prime_UTR	19653389	19653497	.	+	.	Parent=Os09t0507200-01
Chr09	irgsp1_rep	CDS	19653498	19653682	.	+	0	Parent=Os09t0507200-01
Chr09	irgsp1_rep	CDS	19656289	19656367	.	+	1	Parent=Os09t0507200-01
Chr09	irgsp1_rep	CDS	19657012	19657082	.	+	0	Parent=Os09t0507200-01
Chr09	irgsp1_rep	CDS	19657660	19657759	.	+	1	Parent=Os09t0507200-01
Chr09	irgsp1_rep	CDS	19657831	19657872	.	+	0	Parent=Os09t0507200-01
Chr09	irgsp1_rep	CDS	19657967	19658008	.	+	0	Parent=Os09t0507200-01
Chr09	irgsp1_rep	CDS	19658704	19658867	.	+	0	Parent=Os09t0507200-01
Chr09	irgsp1_rep	CDS	19659357	19659420	.	+	1	Parent=Os09t0507200-01
Chr09	irgsp1_rep	three_prime_UTR	19659421	19659765	.	+	.	Parent=Os09t0507200-01
Chr09	irgsp1_rep	mRNA	19662808	19665267	.	+	.	ID=Os09t0507300-01;Name=Os09t0507300-01;Locus_id=Os09g0507300;RAP-DB Gene Symbol Synonym(s)=OsAAO5;RAP-DB Gene Name Synonym(s)=ascorbate oxidase 5;CGSNL Gene Symbol=AAO5;CGSNL Gene Name=ASCORBATE OXIDASE 5;Oryzabase Gene Symbol Synonym(s)=OsAAO5;Oryzabase Gene Name Synonym(s)=AO-like%2C AO homolog%2C ASCORBATE OXIDASE homolog%2C ascorbate oxidase 5%2C Os-l-ascorbate oxidase%2C l-ascorbate oxidase;Note=Ascorbate oxidase%2C Abiotic stress response;Transcript_evidence=AK110881;ORF_evidence=Q0J0J1;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: copper ion binding (GO:0005507),Molecular Function: oxidoreductase activity (GO:0016491),Cellular Component: extracellular region (GO:0005576);InterPro=Cupredoxin (IPR008972),L-ascorbate oxidase%2C plants (IPR017760),Multicopper oxidase%2C type 3 (IPR011707),Multicopper oxidase%2C type 1 (IPR001117),Multicopper oxidase%2C type 2 (IPR011706),Multicopper oxidases%2C conserved site (IPR033138),Multicopper oxidase%2C copper-binding site (IPR002355);NIAS_FLcDNA=002-172-G09;Manual Curation=November 30%2C 2017;Literature_PMID=28261251,26220952;Oryzabase=19932;Expression=AK110881;TENOR=Os09t0507300-01;KEGG=Os09t0507300-01 (EC:1.10.3.3)
Chr09	irgsp1_rep	five_prime_UTR	19662808	19662934	.	+	.	Parent=Os09t0507300-01
Chr09	irgsp1_rep	CDS	19662935	19663198	.	+	0	Parent=Os09t0507300-01
Chr09	irgsp1_rep	CDS	19663302	19663394	.	+	0	Parent=Os09t0507300-01
Chr09	irgsp1_rep	CDS	19663706	19665073	.	+	0	Parent=Os09t0507300-01
Chr09	irgsp1_rep	three_prime_UTR	19665074	19665267	.	+	.	Parent=Os09t0507300-01
Chr09	irgsp1_rep	mRNA	19662913	19665003	.	-	.	ID=Os09t0507350-00;Name=Os09t0507350-00;Locus_id=Os09g0507350;Note=Hypothetical protein.;Transcript_evidence=tplb0051b23 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0507350-00
Chr09	irgsp1_rep	five_prime_UTR	19665002	19665003	.	-	.	Parent=Os09t0507350-00
Chr09	irgsp1_rep	CDS	19663634	19665001	.	-	0	Parent=Os09t0507350-00
Chr09	irgsp1_rep	three_prime_UTR	19663614	19663633	.	-	.	Parent=Os09t0507350-00
Chr09	irgsp1_rep	three_prime_UTR	19663284	19663409	.	-	.	Parent=Os09t0507350-00
Chr09	irgsp1_rep	three_prime_UTR	19662913	19663179	.	-	.	Parent=Os09t0507350-00
Chr09	irgsp1_rep	mRNA	19671252	19673388	.	+	.	ID=Os09t0507400-01;Name=Os09t0507400-01;Locus_id=Os09g0507400;Note=Conserved hypothetical protein.;Transcript_evidence=AK067860 (DDBJ%2C Best hit);ORF_evidence=B8BDB8 (UniProt);NIAS_FLcDNA=J013124G10;Expression=AK067860;TENOR=Os09t0507400-01;KEGG=Os09t0507400-01
Chr09	irgsp1_rep	five_prime_UTR	19671252	19671487	.	+	.	Parent=Os09t0507400-01
Chr09	irgsp1_rep	CDS	19671488	19671862	.	+	0	Parent=Os09t0507400-01
Chr09	irgsp1_rep	three_prime_UTR	19671863	19673388	.	+	.	Parent=Os09t0507400-01
Chr09	irgsp1_rep	mRNA	19674568	19677041	.	-	.	ID=Os09t0507500-01;Name=Os09t0507500-01;Locus_id=Os09g0507500;Oryzabase Gene Symbol Synonym(s)=prx123;Oryzabase Gene Name Synonym(s)=class III peroxidase 123;Note=Similar to Peroxidase 55 precursor (EC 1.11.1.7) (Atperox P55) (ATP20a).;Transcript_evidence=AK071392 (DDBJ%2C Best hit);ORF_evidence=B6U0T8 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J023091L24;Oryzabase=14640;Expression=AK071392;TENOR=Os09t0507500-01;KEGG=Os09t0507500-01 (EC:1.11.1.7)
Chr09	irgsp1_rep	five_prime_UTR	19676971	19677041	.	-	.	Parent=Os09t0507500-01
Chr09	irgsp1_rep	CDS	19676737	19676970	.	-	0	Parent=Os09t0507500-01
Chr09	irgsp1_rep	CDS	19675375	19675566	.	-	0	Parent=Os09t0507500-01
Chr09	irgsp1_rep	CDS	19674711	19675280	.	-	0	Parent=Os09t0507500-01
Chr09	irgsp1_rep	three_prime_UTR	19674568	19674710	.	-	.	Parent=Os09t0507500-01
Chr09	irgsp1_rep	mRNA	19674695	19676991	.	+	.	ID=Os09t0507550-00;Name=Os09t0507550-00;Locus_id=Os09g0507550;Note=Hypothetical protein.;Transcript_evidence=tplb0038a01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0507550-00
Chr09	irgsp1_rep	five_prime_UTR	19674695	19674698	.	+	.	Parent=Os09t0507550-00
Chr09	irgsp1_rep	CDS	19674699	19675244	.	+	0	Parent=Os09t0507550-00
Chr09	irgsp1_rep	three_prime_UTR	19675245	19675260	.	+	.	Parent=Os09t0507550-00
Chr09	irgsp1_rep	three_prime_UTR	19675353	19675578	.	+	.	Parent=Os09t0507550-00
Chr09	irgsp1_rep	three_prime_UTR	19676750	19676991	.	+	.	Parent=Os09t0507550-00
Chr09	irgsp1_rep	mRNA	19678522	19681422	.	-	.	ID=Os09t0507600-00;Name=Os09t0507600-00;Locus_id=Os09g0507600;Note=emp24/gp25L/p24 family protein.;Transcript_evidence=CT836555 (DDBJ%2C Best hit);ORF_evidence=A0MAU7 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: integral to membrane (GO:0016021);InterPro=GOLD (IPR009038);TENOR=Os09t0507600-00;KEGG=Os09t0507600-00
Chr09	irgsp1_rep	five_prime_UTR	19681295	19681422	.	-	.	Parent=Os09t0507600-00
Chr09	irgsp1_rep	five_prime_UTR	19680139	19680145	.	-	.	Parent=Os09t0507600-00
Chr09	irgsp1_rep	CDS	19679932	19680138	.	-	0	Parent=Os09t0507600-00
Chr09	irgsp1_rep	CDS	19679488	19679674	.	-	0	Parent=Os09t0507600-00
Chr09	irgsp1_rep	CDS	19679303	19679410	.	-	2	Parent=Os09t0507600-00
Chr09	irgsp1_rep	CDS	19678752	19678885	.	-	2	Parent=Os09t0507600-00
Chr09	irgsp1_rep	three_prime_UTR	19678522	19678751	.	-	.	Parent=Os09t0507600-00
Chr09	irgsp1_rep	mRNA	19678747	19680141	.	+	.	ID=Os09t0507701-00;Name=Os09t0507701-00;Locus_id=Os09g0507701;Note=Hypothetical gene.;Transcript_evidence=BT016449 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0507701-00;KEGG=Os09t0507701-00
Chr09	irgsp1_rep	five_prime_UTR	19678747	19678880	.	+	.	Parent=Os09t0507701-00
Chr09	irgsp1_rep	five_prime_UTR	19679295	19679407	.	+	.	Parent=Os09t0507701-00
Chr09	irgsp1_rep	five_prime_UTR	19679476	19679479	.	+	.	Parent=Os09t0507701-00
Chr09	irgsp1_rep	CDS	19679480	19679672	.	+	0	Parent=Os09t0507701-00
Chr09	irgsp1_rep	CDS	19679930	19680102	.	+	2	Parent=Os09t0507701-00
Chr09	irgsp1_rep	three_prime_UTR	19680103	19680141	.	+	.	Parent=Os09t0507701-00
Chr09	irgsp1_rep	mRNA	19683683	19685872	.	-	.	ID=Os09t0507800-01;Name=Os09t0507800-01;Locus_id=Os09g0507800;Oryzabase Gene Symbol Synonym(s)=surf-3;Oryzabase Gene Name Synonym(s)=Ribosomal protein L7a%2C Ribosomal protein L7a.e%2C Transcription factor surf-3;Note=60S ribosomal protein L7a.;Transcript_evidence=AK061725 (DDBJ%2C Best hit);ORF_evidence=P35685 (UniProt);GO=Biological Process: ribosome biogenesis (GO:0042254),Cellular Component: ribonucleoprotein complex (GO:0030529);InterPro=Ribosomal protein L7A/L8 (IPR001921),Ribosomal protein L7Ae conserved site (IPR004037),Ribosomal protein L7Ae/L30e/S12e/Gadd45 (IPR004038),Ribosomal protein L7Ae/L8/Nhp2 family (IPR018492);NIAS_FLcDNA=001-038-B03;Oryzabase=17684;Expression=AK061725;TENOR=Os09t0507800-01;KEGG=Os09t0507800-01
Chr09	irgsp1_rep	five_prime_UTR	19685795	19685872	.	-	.	Parent=Os09t0507800-01
Chr09	irgsp1_rep	CDS	19685792	19685794	.	-	0	Parent=Os09t0507800-01
Chr09	irgsp1_rep	CDS	19685571	19685618	.	-	0	Parent=Os09t0507800-01
Chr09	irgsp1_rep	CDS	19685275	19685476	.	-	0	Parent=Os09t0507800-01
Chr09	irgsp1_rep	CDS	19684554	19684723	.	-	2	Parent=Os09t0507800-01
Chr09	irgsp1_rep	CDS	19684312	19684440	.	-	0	Parent=Os09t0507800-01
Chr09	irgsp1_rep	CDS	19684119	19684211	.	-	0	Parent=Os09t0507800-01
Chr09	irgsp1_rep	CDS	19683883	19684014	.	-	0	Parent=Os09t0507800-01
Chr09	irgsp1_rep	three_prime_UTR	19683683	19683882	.	-	.	Parent=Os09t0507800-01
Chr09	irgsp1_rep	mRNA	19691511	19696029	.	+	.	ID=Os09t0508000-01;Name=Os09t0508000-01;Locus_id=Os09g0508000;Note=Hypothetical protein.;Transcript_evidence=AK066539 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013068N24;TENOR=Os09t0508000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	19691511	19691512	.	+	.	Parent=Os09t0508000-01
Chr09	irgsp1_rep	CDS	19691513	19691953	.	+	0	Parent=Os09t0508000-01
Chr09	irgsp1_rep	CDS	19693689	19693694	.	+	0	Parent=Os09t0508000-01
Chr09	irgsp1_rep	three_prime_UTR	19693695	19694386	.	+	.	Parent=Os09t0508000-01
Chr09	irgsp1_rep	three_prime_UTR	19695398	19696029	.	+	.	Parent=Os09t0508000-01
Chr09	irgsp1_rep	mRNA	19693471	19695679	.	-	.	ID=Os09t0508200-01;Name=Os09t0508200-01;Locus_id=Os09g0508200;Note=Pollen Ole e 1 allergen and extensin domain containing protein.;Transcript_evidence=AK064705 (DDBJ%2C Best hit);ORF_evidence=B8BDC0 (UniProt);InterPro=Pollen Ole e 1 allergen/extensin (IPR006041);NIAS_FLcDNA=002-118-A04;Expression=AK064705;TENOR=Os09t0508200-01;KEGG=Os09t0508200-01
Chr09	irgsp1_rep	five_prime_UTR	19695601	19695679	.	-	.	Parent=Os09t0508200-01
Chr09	irgsp1_rep	CDS	19695420	19695600	.	-	0	Parent=Os09t0508200-01
Chr09	irgsp1_rep	CDS	19693691	19694298	.	-	2	Parent=Os09t0508200-01
Chr09	irgsp1_rep	three_prime_UTR	19693471	19693690	.	-	.	Parent=Os09t0508200-01
Chr09	irgsp1_rep	mRNA	19696291	19698761	.	-	.	ID=Os09t0508250-00;Name=Os09t0508250-00;Locus_id=Os09g0508250;Note=Similar to MTN3.;Transcript_evidence=CT836541 (DDBJ%2C Best hit);ORF_evidence=NP_001149496.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=RAG1-activating protein-1-related (IPR004316);TENOR=Os09t0508250-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	19698582	19698761	.	-	.	Parent=Os09t0508250-00
Chr09	irgsp1_rep	five_prime_UTR	19698028	19698416	.	-	.	Parent=Os09t0508250-00
Chr09	irgsp1_rep	CDS	19697500	19698027	.	-	0	Parent=Os09t0508250-00
Chr09	irgsp1_rep	three_prime_UTR	19696291	19697499	.	-	.	Parent=Os09t0508250-00
Chr09	irgsp1_rep	mRNA	19702041	19706618	.	-	.	ID=Os09t0508300-01;Name=Os09t0508300-01;Locus_id=Os09g0508300;Note=Zinc finger%2C DHHC-type domain containing protein.;Transcript_evidence=AK121806 (DDBJ%2C Best hit);ORF_evidence=NP_001149898.1 (RefSeq);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C DHHC-type%2C palmitoyltransferase (IPR001594);NIAS_FLcDNA=J033097L10;Expression=AK121806;TENOR=Os09t0508300-01;KEGG=Os09t0508300-01
Chr09	irgsp1_rep	five_prime_UTR	19706262	19706618	.	-	.	Parent=Os09t0508300-01
Chr09	irgsp1_rep	CDS	19706172	19706261	.	-	0	Parent=Os09t0508300-01
Chr09	irgsp1_rep	CDS	19704236	19704418	.	-	0	Parent=Os09t0508300-01
Chr09	irgsp1_rep	CDS	19703468	19703767	.	-	0	Parent=Os09t0508300-01
Chr09	irgsp1_rep	CDS	19703045	19703278	.	-	0	Parent=Os09t0508300-01
Chr09	irgsp1_rep	CDS	19702425	19702943	.	-	0	Parent=Os09t0508300-01
Chr09	irgsp1_rep	three_prime_UTR	19702041	19702424	.	-	.	Parent=Os09t0508300-01
Chr09	irgsp1_rep	mRNA	19702165	19703066	.	+	.	ID=Os09t0508401-00;Name=Os09t0508401-00;Locus_id=Os09g0508401;Note=Non-protein coding transcript.;Transcript_evidence=EU943668 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0508401-00
Chr09	irgsp1_rep	exon	19702165	19703066	.	+	.	Parent=Os09t0508401-00
Chr09	irgsp1_rep	mRNA	19710958	19712800	.	+	.	ID=Os09t0508500-01;Name=Os09t0508500-01;Locus_id=Os09g0508500;CGSNL Gene Symbol=DRB3;CGSNL Gene Name=DSRNA-BINDING PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsDRB3;Oryzabase Gene Name Synonym(s)=dsRNA-binding protein 3;Note=Similar to Isoform 2 of Double-stranded RNA-binding protein 5.;Transcript_evidence=AK058408 (DDBJ%2C Best hit);ORF_evidence=B7E321-2 (UniProt);GO=Biological Process: rRNA catabolic process (GO:0016075),Cellular Component: intracellular (GO:0005622),Molecular Function: RNA binding (GO:0003723),Molecular Function: double-stranded RNA binding (GO:0003725),Molecular Function: ribonuclease III activity (GO:0004525);InterPro=Double-stranded RNA-binding (IPR001159),Ribonuclease III%2C bacterial (IPR011907),Double-stranded RNA-binding-like (IPR014720);NIAS_FLcDNA=001-015-C03;Oryzabase=22066;TENOR=Os09t0508500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	19710958	19711201	.	+	.	Parent=Os09t0508500-01
Chr09	irgsp1_rep	CDS	19711202	19711447	.	+	0	Parent=Os09t0508500-01
Chr09	irgsp1_rep	CDS	19711532	19711751	.	+	0	Parent=Os09t0508500-01
Chr09	irgsp1_rep	CDS	19711843	19712450	.	+	2	Parent=Os09t0508500-01
Chr09	irgsp1_rep	three_prime_UTR	19712451	19712800	.	+	.	Parent=Os09t0508500-01
Chr09	irgsp1_rep	mRNA	19710958	19712801	.	+	.	ID=Os09t0508500-02;Name=Os09t0508500-02;Locus_id=Os09g0508500;CGSNL Gene Symbol=DRB3;CGSNL Gene Name=DSRNA-BINDING PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsDRB3;Oryzabase Gene Name Synonym(s)=dsRNA-binding protein 3;Note=Similar to Double-stranded RNA binding motif family protein.;Transcript_evidence=AK058662 (DDBJ%2C Best hit);ORF_evidence=B7E321-2 (UniProt);GO=Biological Process: rRNA catabolic process (GO:0016075),Cellular Component: intracellular (GO:0005622),Molecular Function: RNA binding (GO:0003723),Molecular Function: double-stranded RNA binding (GO:0003725),Molecular Function: ribonuclease III activity (GO:0004525);InterPro=Double-stranded RNA-binding (IPR001159),Ribonuclease III%2C bacterial (IPR011907),Double-stranded RNA-binding-like (IPR014720);NIAS_FLcDNA=001-018-G05;Oryzabase=22066;Expression=AK058662;TENOR=Os09t0508500-02;KEGG=Os09t0508500-02
Chr09	irgsp1_rep	five_prime_UTR	19710958	19711201	.	+	.	Parent=Os09t0508500-02
Chr09	irgsp1_rep	CDS	19711202	19711447	.	+	0	Parent=Os09t0508500-02
Chr09	irgsp1_rep	CDS	19711532	19712500	.	+	0	Parent=Os09t0508500-02
Chr09	irgsp1_rep	three_prime_UTR	19712501	19712801	.	+	.	Parent=Os09t0508500-02
Chr09	irgsp1_rep	mRNA	19728447	19735516	.	-	.	ID=Os09t0508900-01;Name=Os09t0508900-01;Locus_id=Os09g0508900;Note=Similar to cDNA clone:001-044-E12%2C full insert sequence.;Transcript_evidence=AK066022 (DDBJ%2C Best hit),AK104878 (DDBJ%2C Best hit);ORF_evidence=NP_181526.1 (RefSeq);InterPro=Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J013050L01,001-044-E12;TENOR=Os09t0508900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	19735375	19735516	.	-	.	Parent=Os09t0508900-01
Chr09	irgsp1_rep	five_prime_UTR	19732875	19732882	.	-	.	Parent=Os09t0508900-01
Chr09	irgsp1_rep	CDS	19732794	19732874	.	-	0	Parent=Os09t0508900-01
Chr09	irgsp1_rep	CDS	19732606	19732701	.	-	0	Parent=Os09t0508900-01
Chr09	irgsp1_rep	CDS	19732448	19732522	.	-	0	Parent=Os09t0508900-01
Chr09	irgsp1_rep	CDS	19732169	19732299	.	-	0	Parent=Os09t0508900-01
Chr09	irgsp1_rep	CDS	19731580	19731634	.	-	1	Parent=Os09t0508900-01
Chr09	irgsp1_rep	CDS	19730949	19731104	.	-	0	Parent=Os09t0508900-01
Chr09	irgsp1_rep	CDS	19730460	19730528	.	-	0	Parent=Os09t0508900-01
Chr09	irgsp1_rep	CDS	19730266	19730373	.	-	0	Parent=Os09t0508900-01
Chr09	irgsp1_rep	CDS	19729575	19729643	.	-	0	Parent=Os09t0508900-01
Chr09	irgsp1_rep	CDS	19728990	19729044	.	-	0	Parent=Os09t0508900-01
Chr09	irgsp1_rep	CDS	19728556	19728752	.	-	2	Parent=Os09t0508900-01
Chr09	irgsp1_rep	three_prime_UTR	19728447	19728555	.	-	.	Parent=Os09t0508900-01
Chr09	irgsp1_rep	mRNA	19733800	19734503	.	+	.	ID=Os09t0508951-01;Name=Os09t0508951-01;Locus_id=Os09g0508951;Note=Hypothetical gene.;Transcript_evidence=AK287798 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065175F24;TENOR=Os09t0508951-01;KEGG=Os09t0508951-01
Chr09	irgsp1_rep	CDS	19733800	19734183	.	+	0	Parent=Os09t0508951-01
Chr09	irgsp1_rep	three_prime_UTR	19734184	19734503	.	+	.	Parent=Os09t0508951-01
Chr09	irgsp1_rep	mRNA	19737197	19740265	.	-	.	ID=Os09t0509000-01;Name=Os09t0509000-01;Locus_id=Os09g0509000;CGSNL Gene Symbol=MORF8;CGSNL Gene Name=MULTIPLE ORGANELLAR RNA EDITING FACTOR 8;Oryzabase Gene Symbol Synonym(s)=OsMORF8%2C OsMORF8b%2C MORF8b%2C OsMORF8-2%2C MORF8-2;Oryzabase Gene Name Synonym(s)=multiple organellar RNA editing factor 8;Note=Similar to DAG protein.;Transcript_evidence=AK106007 (DDBJ%2C Best hit);ORF_evidence=NP_001149362.1 (RefSeq);NIAS_FLcDNA=001-206-A08;Oryzabase=22396;Expression=AK106007;TENOR=Os09t0509000-01;KEGG=Os09t0509000-01
Chr09	irgsp1_rep	five_prime_UTR	19740224	19740265	.	-	.	Parent=Os09t0509000-01
Chr09	irgsp1_rep	CDS	19739853	19740223	.	-	0	Parent=Os09t0509000-01
Chr09	irgsp1_rep	CDS	19739001	19739098	.	-	1	Parent=Os09t0509000-01
Chr09	irgsp1_rep	CDS	19738840	19738905	.	-	2	Parent=Os09t0509000-01
Chr09	irgsp1_rep	CDS	19737401	19738056	.	-	2	Parent=Os09t0509000-01
Chr09	irgsp1_rep	three_prime_UTR	19737197	19737400	.	-	.	Parent=Os09t0509000-01
Chr09	irgsp1_rep	mRNA	19748944	19750835	.	-	.	ID=Os09t0509050-00;Name=Os09t0509050-00;Locus_id=Os09g0509050;Note=Hypothetical protein.;Transcript_evidence=AK356899 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0509050-00
Chr09	irgsp1_rep	five_prime_UTR	19750487	19750835	.	-	.	Parent=Os09t0509050-00
Chr09	irgsp1_rep	five_prime_UTR	19749886	19749898	.	-	.	Parent=Os09t0509050-00
Chr09	irgsp1_rep	CDS	19749415	19749885	.	-	0	Parent=Os09t0509050-00
Chr09	irgsp1_rep	three_prime_UTR	19748944	19749414	.	-	.	Parent=Os09t0509050-00
Chr09	irgsp1_rep	mRNA	19749085	19750938	.	+	.	ID=Os09t0509100-01;Name=Os09t0509100-01;Locus_id=Os09g0509100;Oryzabase Gene Symbol Synonym(s)=ONAC001%2C ONAC1;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 001%2C NAC domain-containing protein 1;Note=No apical meristem (NAM) protein domain containing protein.;Transcript_evidence=AK060509 (DDBJ%2C Best hit);ORF_evidence=NP_001151020.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=001-019-D01;Oryzabase=11454;Expression=AK060509;TENOR=Os09t0509100-01;KEGG=Os09t0509100-01
Chr09	irgsp1_rep	five_prime_UTR	19749085	19749299	.	+	.	Parent=Os09t0509100-01
Chr09	irgsp1_rep	CDS	19749300	19749465	.	+	0	Parent=Os09t0509100-01
Chr09	irgsp1_rep	CDS	19749566	19749885	.	+	2	Parent=Os09t0509100-01
Chr09	irgsp1_rep	CDS	19750403	19750660	.	+	0	Parent=Os09t0509100-01
Chr09	irgsp1_rep	three_prime_UTR	19750661	19750938	.	+	.	Parent=Os09t0509100-01
Chr09	irgsp1_rep	mRNA	19752711	19758949	.	+	.	ID=Os09t0509200-01;Name=Os09t0509200-01;Locus_id=Os09g0509200;Note=Similar to Pyruvate dehydrogenase E1 beta subunit isoform 3 (EC 1.2.4.1).;Transcript_evidence=AK069525 (DDBJ%2C Best hit);ORF_evidence=B6T6H3 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Transketolase-like%2C pyrimidine-binding domain (IPR005475),Transketolase%2C C-terminal (IPR005476),Transketolase%2C C-terminal/Pyruvate-ferredoxin oxidoreductase%2C domain II (IPR009014),Transketolase-like%2C C-terminal (IPR015941);NIAS_FLcDNA=J023022P15;Expression=AK069525;TENOR=Os09t0509200-01;KEGG=Os09t0509200-01 (EC:1.2.4.1)
Chr09	irgsp1_rep	five_prime_UTR	19752711	19752897	.	+	.	Parent=Os09t0509200-01
Chr09	irgsp1_rep	CDS	19752898	19752936	.	+	0	Parent=Os09t0509200-01
Chr09	irgsp1_rep	CDS	19753087	19753173	.	+	0	Parent=Os09t0509200-01
Chr09	irgsp1_rep	CDS	19754377	19754457	.	+	0	Parent=Os09t0509200-01
Chr09	irgsp1_rep	CDS	19754529	19754555	.	+	0	Parent=Os09t0509200-01
Chr09	irgsp1_rep	CDS	19754655	19754717	.	+	0	Parent=Os09t0509200-01
Chr09	irgsp1_rep	CDS	19754834	19754920	.	+	0	Parent=Os09t0509200-01
Chr09	irgsp1_rep	CDS	19755356	19755481	.	+	0	Parent=Os09t0509200-01
Chr09	irgsp1_rep	CDS	19755893	19756026	.	+	0	Parent=Os09t0509200-01
Chr09	irgsp1_rep	CDS	19756103	19756175	.	+	1	Parent=Os09t0509200-01
Chr09	irgsp1_rep	CDS	19756373	19756438	.	+	0	Parent=Os09t0509200-01
Chr09	irgsp1_rep	CDS	19756844	19756882	.	+	0	Parent=Os09t0509200-01
Chr09	irgsp1_rep	CDS	19756993	19757117	.	+	0	Parent=Os09t0509200-01
Chr09	irgsp1_rep	CDS	19757197	19757311	.	+	1	Parent=Os09t0509200-01
Chr09	irgsp1_rep	CDS	19758591	19758659	.	+	0	Parent=Os09t0509200-01
Chr09	irgsp1_rep	three_prime_UTR	19758660	19758949	.	+	.	Parent=Os09t0509200-01
Chr09	irgsp1_rep	mRNA	19753514	19758951	.	+	.	ID=Os09t0509200-02;Name=Os09t0509200-02;Locus_id=Os09g0509200;Note=Similar to (Rice Genome Annotation Project) pyruvate dehydrogenase E1 component subunit beta.;Transcript_evidence=AK061863 (DDBJ%2C Best hit);ORF_evidence=B7EWY7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Transketolase-like%2C pyrimidine-binding domain (IPR005475),Transketolase%2C C-terminal (IPR005476),Transketolase%2C C-terminal/Pyruvate-ferredoxin oxidoreductase%2C domain II (IPR009014),Transketolase-like%2C C-terminal (IPR015941);NIAS_FLcDNA=001-040-H03;Expression=AK061863;TENOR=Os09t0509200-02;KEGG=Os09t0509200-02 (EC:1.2.4.1)
Chr09	irgsp1_rep	five_prime_UTR	19753514	19753748	.	+	.	Parent=Os09t0509200-02
Chr09	irgsp1_rep	CDS	19753749	19753814	.	+	0	Parent=Os09t0509200-02
Chr09	irgsp1_rep	CDS	19754377	19754457	.	+	0	Parent=Os09t0509200-02
Chr09	irgsp1_rep	CDS	19754529	19754555	.	+	0	Parent=Os09t0509200-02
Chr09	irgsp1_rep	CDS	19754655	19754717	.	+	0	Parent=Os09t0509200-02
Chr09	irgsp1_rep	CDS	19754834	19754920	.	+	0	Parent=Os09t0509200-02
Chr09	irgsp1_rep	CDS	19755356	19755481	.	+	0	Parent=Os09t0509200-02
Chr09	irgsp1_rep	CDS	19755893	19756026	.	+	0	Parent=Os09t0509200-02
Chr09	irgsp1_rep	CDS	19756103	19756175	.	+	1	Parent=Os09t0509200-02
Chr09	irgsp1_rep	CDS	19756373	19756438	.	+	0	Parent=Os09t0509200-02
Chr09	irgsp1_rep	CDS	19756844	19756882	.	+	0	Parent=Os09t0509200-02
Chr09	irgsp1_rep	CDS	19756993	19757117	.	+	0	Parent=Os09t0509200-02
Chr09	irgsp1_rep	CDS	19757197	19757311	.	+	1	Parent=Os09t0509200-02
Chr09	irgsp1_rep	CDS	19758591	19758659	.	+	0	Parent=Os09t0509200-02
Chr09	irgsp1_rep	three_prime_UTR	19758660	19758951	.	+	.	Parent=Os09t0509200-02
Chr09	irgsp1_rep	mRNA	19760481	19766335	.	+	.	ID=Os09t0509300-01;Name=Os09t0509300-01;Locus_id=Os09g0509300;RAP-DB Gene Symbol Synonym(s)=WEG1;RAP-DB Gene Name Synonym(s)=wavy root elongation growth 1;CGSNL Gene Symbol=WEG1;CGSNL Gene Name=WAVY ROOT ELONGATION GROWTH 1;Oryzabase Gene Symbol Synonym(s)=OsWEG1;Oryzabase Gene Name Synonym(s)=wavy root elongation growth 1;Note=Putative member of the hydroxyproline-rich glycoprotein family%2C Regulation of cell wall extensibility in the root elongation zone;Transcript_evidence=AK067488;ORF_evidence=Q0J0H3;InterPro=AH/BAR domain superfamily (IPR027267);NIAS_FLcDNA=J013110D20;Manual Curation=January 16%2C 2020;Literature_PMID=31925781;Oryzabase=23463;Expression=AK067488;TENOR=Os09t0509300-01;KEGG=Os09t0509300-01
Chr09	irgsp1_rep	five_prime_UTR	19760481	19760659	.	+	.	Parent=Os09t0509300-01
Chr09	irgsp1_rep	CDS	19760660	19760785	.	+	0	Parent=Os09t0509300-01
Chr09	irgsp1_rep	CDS	19761797	19761869	.	+	0	Parent=Os09t0509300-01
Chr09	irgsp1_rep	CDS	19762303	19762377	.	+	2	Parent=Os09t0509300-01
Chr09	irgsp1_rep	CDS	19762649	19762710	.	+	2	Parent=Os09t0509300-01
Chr09	irgsp1_rep	CDS	19762793	19762861	.	+	0	Parent=Os09t0509300-01
Chr09	irgsp1_rep	CDS	19763513	19763541	.	+	0	Parent=Os09t0509300-01
Chr09	irgsp1_rep	CDS	19763619	19763826	.	+	1	Parent=Os09t0509300-01
Chr09	irgsp1_rep	CDS	19763933	19764166	.	+	0	Parent=Os09t0509300-01
Chr09	irgsp1_rep	CDS	19764657	19765664	.	+	0	Parent=Os09t0509300-01
Chr09	irgsp1_rep	three_prime_UTR	19765665	19765665	.	+	.	Parent=Os09t0509300-01
Chr09	irgsp1_rep	three_prime_UTR	19766140	19766335	.	+	.	Parent=Os09t0509300-01
Chr09	irgsp1_rep	mRNA	19760466	19766353	.	-	.	ID=Os09t0509350-00;Name=Os09t0509350-00;Locus_id=Os09g0509350;Note=Hypothetical protein.;Transcript_evidence=tplb0043a08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0509350-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	19766127	19766353	.	-	.	Parent=Os09t0509350-00
Chr09	irgsp1_rep	five_prime_UTR	19764655	19765671	.	-	.	Parent=Os09t0509350-00
Chr09	irgsp1_rep	five_prime_UTR	19763924	19764164	.	-	.	Parent=Os09t0509350-00
Chr09	irgsp1_rep	five_prime_UTR	19763618	19763818	.	-	.	Parent=Os09t0509350-00
Chr09	irgsp1_rep	five_prime_UTR	19763004	19763541	.	-	.	Parent=Os09t0509350-00
Chr09	irgsp1_rep	five_prime_UTR	19762301	19762919	.	-	.	Parent=Os09t0509350-00
Chr09	irgsp1_rep	five_prime_UTR	19761867	19761867	.	-	.	Parent=Os09t0509350-00
Chr09	irgsp1_rep	CDS	19761788	19761866	.	-	0	Parent=Os09t0509350-00
Chr09	irgsp1_rep	CDS	19760555	19760778	.	-	2	Parent=Os09t0509350-00
Chr09	irgsp1_rep	three_prime_UTR	19760466	19760554	.	-	.	Parent=Os09t0509350-00
Chr09	irgsp1_rep	mRNA	19769695	19775038	.	+	.	ID=Os09t0509400-01;Name=Os09t0509400-01;Locus_id=Os09g0509400;Note=Conserved hypothetical protein.;Transcript_evidence=AK100887 (DDBJ%2C Best hit);ORF_evidence=B8BJ08 (UniProt);NIAS_FLcDNA=J023128J02;TENOR=Os09t0509400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	19769695	19769900	.	+	.	Parent=Os09t0509400-01
Chr09	irgsp1_rep	five_prime_UTR	19770575	19770843	.	+	.	Parent=Os09t0509400-01
Chr09	irgsp1_rep	CDS	19770844	19772100	.	+	0	Parent=Os09t0509400-01
Chr09	irgsp1_rep	CDS	19772199	19772450	.	+	0	Parent=Os09t0509400-01
Chr09	irgsp1_rep	CDS	19772844	19772924	.	+	0	Parent=Os09t0509400-01
Chr09	irgsp1_rep	CDS	19773853	19773994	.	+	0	Parent=Os09t0509400-01
Chr09	irgsp1_rep	CDS	19774075	19774511	.	+	2	Parent=Os09t0509400-01
Chr09	irgsp1_rep	CDS	19774847	19774903	.	+	0	Parent=Os09t0509400-01
Chr09	irgsp1_rep	three_prime_UTR	19774904	19775038	.	+	.	Parent=Os09t0509400-01
Chr09	irgsp1_rep	mRNA	19771520	19775038	.	+	.	ID=Os09t0509400-02;Name=Os09t0509400-02;Locus_id=Os09g0509400;Note=Hypothetical conserved gene.;Transcript_evidence=AK062054 (DDBJ%2C Best hit);ORF_evidence=B8BJ08 (UniProt);NIAS_FLcDNA=001-044-C02;Expression=AK062054;TENOR=Os09t0509400-02;KEGG=Os09t0509400-02
Chr09	irgsp1_rep	five_prime_UTR	19771520	19771521	.	+	.	Parent=Os09t0509400-02
Chr09	irgsp1_rep	CDS	19771522	19772100	.	+	0	Parent=Os09t0509400-02
Chr09	irgsp1_rep	CDS	19772199	19772450	.	+	0	Parent=Os09t0509400-02
Chr09	irgsp1_rep	CDS	19772844	19772924	.	+	0	Parent=Os09t0509400-02
Chr09	irgsp1_rep	CDS	19774075	19774104	.	+	0	Parent=Os09t0509400-02
Chr09	irgsp1_rep	three_prime_UTR	19774105	19774511	.	+	.	Parent=Os09t0509400-02
Chr09	irgsp1_rep	three_prime_UTR	19774847	19775038	.	+	.	Parent=Os09t0509400-02
Chr09	irgsp1_rep	mRNA	19770566	19775042	.	-	.	ID=Os09t0509450-00;Name=Os09t0509450-00;Locus_id=Os09g0509450;Note=Hypothetical protein.;Transcript_evidence=tplb0028g11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0509450-00
Chr09	irgsp1_rep	five_prime_UTR	19774865	19775042	.	-	.	Parent=Os09t0509450-00
Chr09	irgsp1_rep	five_prime_UTR	19774068	19774530	.	-	.	Parent=Os09t0509450-00
Chr09	irgsp1_rep	five_prime_UTR	19773851	19773988	.	-	.	Parent=Os09t0509450-00
Chr09	irgsp1_rep	five_prime_UTR	19772842	19772922	.	-	.	Parent=Os09t0509450-00
Chr09	irgsp1_rep	five_prime_UTR	19772272	19772447	.	-	.	Parent=Os09t0509450-00
Chr09	irgsp1_rep	CDS	19772196	19772271	.	-	0	Parent=Os09t0509450-00
Chr09	irgsp1_rep	CDS	19771928	19772097	.	-	2	Parent=Os09t0509450-00
Chr09	irgsp1_rep	three_prime_UTR	19770566	19771927	.	-	.	Parent=Os09t0509450-00
Chr09	irgsp1_rep	mRNA	19775385	19780571	.	-	.	ID=Os09t0509500-00;Name=Os09t0509500-00;Locus_id=Os09g0509500;Note=Diacylglycerol acyltransferase domain containing protein.;Transcript_evidence=AK364399 (DDBJ);ORF_evidence=NP_001063630.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Diacylglycerol acyltransferase (IPR007130);TENOR=Os09t0509500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	19780523	19780571	.	-	.	Parent=Os09t0509500-00
Chr09	irgsp1_rep	CDS	19780237	19780522	.	-	0	Parent=Os09t0509500-00
Chr09	irgsp1_rep	CDS	19779266	19779317	.	-	2	Parent=Os09t0509500-00
Chr09	irgsp1_rep	CDS	19779137	19779192	.	-	1	Parent=Os09t0509500-00
Chr09	irgsp1_rep	CDS	19778720	19778878	.	-	2	Parent=Os09t0509500-00
Chr09	irgsp1_rep	CDS	19778513	19778617	.	-	2	Parent=Os09t0509500-00
Chr09	irgsp1_rep	CDS	19778179	19778285	.	-	2	Parent=Os09t0509500-00
Chr09	irgsp1_rep	CDS	19777967	19778088	.	-	0	Parent=Os09t0509500-00
Chr09	irgsp1_rep	CDS	19777744	19777801	.	-	1	Parent=Os09t0509500-00
Chr09	irgsp1_rep	three_prime_UTR	19777694	19777743	.	-	.	Parent=Os09t0509500-00
Chr09	irgsp1_rep	three_prime_UTR	19777253	19777412	.	-	.	Parent=Os09t0509500-00
Chr09	irgsp1_rep	three_prime_UTR	19776763	19777106	.	-	.	Parent=Os09t0509500-00
Chr09	irgsp1_rep	three_prime_UTR	19776476	19776589	.	-	.	Parent=Os09t0509500-00
Chr09	irgsp1_rep	three_prime_UTR	19776098	19776183	.	-	.	Parent=Os09t0509500-00
Chr09	irgsp1_rep	three_prime_UTR	19775846	19775955	.	-	.	Parent=Os09t0509500-00
Chr09	irgsp1_rep	three_prime_UTR	19775385	19775665	.	-	.	Parent=Os09t0509500-00
Chr09	irgsp1_rep	mRNA	19783524	19786772	.	-	.	ID=Os09t0509700-01;Name=Os09t0509700-01;Locus_id=Os09g0509700;Oryzabase Gene Symbol Synonym(s)=OsBBX28%2C OsCCT32%2C OsQ%2C BBX28%2C CCT32;Oryzabase Gene Name Synonym(s)=B-box-containing protein 28%2C CCT domain-containing gene 32%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 32%2C CCT domain protein 32;Note=Zinc finger%2C B-box domain containing protein.;Transcript_evidence=AK120589 (DDBJ%2C Best hit);ORF_evidence=B9G4H8 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C B-box (IPR000315),CCT domain (IPR010402);NIAS_FLcDNA=J013145I18;Oryzabase=11658;TENOR=Os09t0509700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	19786677	19786772	.	-	.	Parent=Os09t0509700-01
Chr09	irgsp1_rep	CDS	19785885	19786676	.	-	0	Parent=Os09t0509700-01
Chr09	irgsp1_rep	CDS	19785035	19785262	.	-	0	Parent=Os09t0509700-01
Chr09	irgsp1_rep	CDS	19784372	19784456	.	-	0	Parent=Os09t0509700-01
Chr09	irgsp1_rep	CDS	19784181	19784251	.	-	2	Parent=Os09t0509700-01
Chr09	irgsp1_rep	CDS	19783945	19784064	.	-	0	Parent=Os09t0509700-01
Chr09	irgsp1_rep	three_prime_UTR	19783524	19783944	.	-	.	Parent=Os09t0509700-01
Chr09	irgsp1_rep	mRNA	19788807	19789032	.	+	.	ID=Os09t0509800-00;Name=Os09t0509800-00;Locus_id=Os09g0509800;Note=Non-protein coding transcript.;Transcript_evidence=FP100628 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0509800-00
Chr09	irgsp1_rep	exon	19788807	19789032	.	+	.	Parent=Os09t0509800-00
Chr09	irgsp1_rep	mRNA	19792105	19792300	.	+	.	ID=Os09t0509900-00;Name=Os09t0509900-00;Locus_id=Os09g0509900;Note=Non-protein coding transcript.;Transcript_evidence=FP100628 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0509900-00
Chr09	irgsp1_rep	exon	19792105	19792300	.	+	.	Parent=Os09t0509900-00
Chr09	irgsp1_rep	mRNA	19796232	19798756	.	+	.	ID=Os09t0510000-01;Name=Os09t0510000-01;Locus_id=Os09g0510000;Note=Hypothetical protein.;Transcript_evidence=AK121614 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J033043O11;TENOR=Os09t0510000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	19796232	19796232	.	+	.	Parent=Os09t0510000-01
Chr09	irgsp1_rep	CDS	19796233	19796350	.	+	0	Parent=Os09t0510000-01
Chr09	irgsp1_rep	CDS	19796628	19796889	.	+	2	Parent=Os09t0510000-01
Chr09	irgsp1_rep	CDS	19798516	19798573	.	+	1	Parent=Os09t0510000-01
Chr09	irgsp1_rep	three_prime_UTR	19798574	19798756	.	+	.	Parent=Os09t0510000-01
Chr09	irgsp1_rep	mRNA	19800261	19802481	.	+	.	ID=Os09t0510200-01;Name=Os09t0510200-01;Locus_id=Os09g0510200;Note=Protein of unknown function DUF667 family protein.;Transcript_evidence=AK108370 (DDBJ%2C Best hit);ORF_evidence=B6T7P6 (UniProt);InterPro=Protein of unknown function DUF667 (IPR007714);NIAS_FLcDNA=002-142-D07;Expression=AK108370;TENOR=Os09t0510200-01;KEGG=Os09t0510200-01
Chr09	irgsp1_rep	five_prime_UTR	19800261	19800262	.	+	.	Parent=Os09t0510200-01
Chr09	irgsp1_rep	CDS	19800263	19800293	.	+	0	Parent=Os09t0510200-01
Chr09	irgsp1_rep	CDS	19800899	19801140	.	+	2	Parent=Os09t0510200-01
Chr09	irgsp1_rep	CDS	19801824	19802060	.	+	0	Parent=Os09t0510200-01
Chr09	irgsp1_rep	CDS	19802154	19802162	.	+	0	Parent=Os09t0510200-01
Chr09	irgsp1_rep	three_prime_UTR	19802163	19802481	.	+	.	Parent=Os09t0510200-01
Chr09	irgsp1_rep	mRNA	19812678	19815059	.	-	.	ID=Os09t0510500-01;Name=Os09t0510500-01;Locus_id=Os09g0510500;RAP-DB Gene Symbol Synonym(s)=OsBC1%2C OsbHLH081%2C OsbHLH082;RAP-DB Gene Name Synonym(s)=OsBUL1 COMPLEX1%2C basic helix-loop-helix protein 081%2C basic helix-loop-helix protein 082;Oryzabase Gene Symbol Synonym(s)=OsbHLH081%2C bHLH081%2C OsBC1%2C BC1%2C OsbHLH082;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 081%2C OsBUL1 COMPLEX1%2C BUL1 COMPLEX 1%2C BU1-LIKE 1 COMPLEX1%2C BU-LIKE1 COMPLEX1%2C basic helix-loop-helix protein 082;Note=Basic helix-loop-helix (bHLH) transcriptional activator%2C Control of leaf angle and grain size;Transcript_evidence=AK066188;ORF_evidence=Q0J0G7;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);NIAS_FLcDNA=J013053A18;Manual Curation=January 6%2C 2017;Literature_PMID=27879391;Oryzabase=15368,15369;Expression=AK066188;TENOR=Os09t0510500-01;KEGG=Os09t0510500-01
Chr09	irgsp1_rep	five_prime_UTR	19814933	19815059	.	-	.	Parent=Os09t0510500-01
Chr09	irgsp1_rep	CDS	19814702	19814932	.	-	0	Parent=Os09t0510500-01
Chr09	irgsp1_rep	CDS	19814413	19814550	.	-	0	Parent=Os09t0510500-01
Chr09	irgsp1_rep	CDS	19814242	19814307	.	-	0	Parent=Os09t0510500-01
Chr09	irgsp1_rep	CDS	19814052	19814120	.	-	0	Parent=Os09t0510500-01
Chr09	irgsp1_rep	CDS	19813877	19813960	.	-	0	Parent=Os09t0510500-01
Chr09	irgsp1_rep	CDS	19813607	19813771	.	-	0	Parent=Os09t0510500-01
Chr09	irgsp1_rep	CDS	19813397	19813492	.	-	0	Parent=Os09t0510500-01
Chr09	irgsp1_rep	three_prime_UTR	19813342	19813396	.	-	.	Parent=Os09t0510500-01
Chr09	irgsp1_rep	three_prime_UTR	19812678	19812910	.	-	.	Parent=Os09t0510500-01
Chr09	irgsp1_rep	mRNA	19823916	19831332	.	-	.	ID=Os09t0510700-01;Name=Os09t0510700-01;Locus_id=Os09g0510700;Note=Similar to GCN4-complementing protein homolog.;Transcript_evidence=AK073117 (DDBJ%2C Best hit);ORF_evidence=NP_196834.3 (RefSeq);GO=Biological Process: regulation of ARF GTPase activity (GO:0032312),Cellular Component: cytoplasm (GO:0005737),Molecular Function: protein binding (GO:0005515),Molecular Function: ARF GTPase activator activity (GO:0008060),Molecular Function: zinc ion binding (GO:0008270);InterPro=Arf GTPase activating protein (IPR001164),Pleckstrin homology domain (IPR001849),Ankyrin repeat (IPR002110),BAR (IPR004148),Pleckstrin homology-type (IPR011993),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J033011K11;Expression=AK073117;TENOR=Os09t0510700-01;KEGG=Os09t0510700-01
Chr09	irgsp1_rep	five_prime_UTR	19830967	19831332	.	-	.	Parent=Os09t0510700-01
Chr09	irgsp1_rep	CDS	19830922	19830966	.	-	0	Parent=Os09t0510700-01
Chr09	irgsp1_rep	CDS	19829962	19830038	.	-	0	Parent=Os09t0510700-01
Chr09	irgsp1_rep	CDS	19829665	19829765	.	-	1	Parent=Os09t0510700-01
Chr09	irgsp1_rep	CDS	19829340	19829410	.	-	2	Parent=Os09t0510700-01
Chr09	irgsp1_rep	CDS	19828969	19829031	.	-	0	Parent=Os09t0510700-01
Chr09	irgsp1_rep	CDS	19828843	19828887	.	-	0	Parent=Os09t0510700-01
Chr09	irgsp1_rep	CDS	19828482	19828547	.	-	0	Parent=Os09t0510700-01
Chr09	irgsp1_rep	CDS	19828347	19828394	.	-	0	Parent=Os09t0510700-01
Chr09	irgsp1_rep	CDS	19828167	19828262	.	-	0	Parent=Os09t0510700-01
Chr09	irgsp1_rep	CDS	19828040	19828081	.	-	0	Parent=Os09t0510700-01
Chr09	irgsp1_rep	CDS	19827452	19827667	.	-	0	Parent=Os09t0510700-01
Chr09	irgsp1_rep	CDS	19827209	19827340	.	-	0	Parent=Os09t0510700-01
Chr09	irgsp1_rep	CDS	19826876	19827097	.	-	0	Parent=Os09t0510700-01
Chr09	irgsp1_rep	CDS	19826668	19826754	.	-	0	Parent=Os09t0510700-01
Chr09	irgsp1_rep	CDS	19826253	19826594	.	-	0	Parent=Os09t0510700-01
Chr09	irgsp1_rep	CDS	19825699	19825841	.	-	0	Parent=Os09t0510700-01
Chr09	irgsp1_rep	CDS	19825510	19825606	.	-	1	Parent=Os09t0510700-01
Chr09	irgsp1_rep	CDS	19824703	19825202	.	-	0	Parent=Os09t0510700-01
Chr09	irgsp1_rep	CDS	19824150	19824267	.	-	1	Parent=Os09t0510700-01
Chr09	irgsp1_rep	three_prime_UTR	19823916	19824149	.	-	.	Parent=Os09t0510700-01
Chr09	irgsp1_rep	mRNA	19854123	19858607	.	-	.	ID=Os09t0510900-01;Name=Os09t0510900-01;Locus_id=Os09g0510900;Oryzabase Gene Symbol Synonym(s)=Os_F0689;Note=Hypothetical conserved gene.;Transcript_evidence=AK241991 (DDBJ%2C Best hit);ORF_evidence=A2Z301 (UniProt);NIAS_FLcDNA=J075099D18;Oryzabase=17539;TENOR=Os09t0510900-01;KEGG=Os09t0510900-01
Chr09	irgsp1_rep	five_prime_UTR	19857765	19858607	.	-	.	Parent=Os09t0510900-01
Chr09	irgsp1_rep	CDS	19857683	19857764	.	-	0	Parent=Os09t0510900-01
Chr09	irgsp1_rep	CDS	19856793	19856899	.	-	2	Parent=Os09t0510900-01
Chr09	irgsp1_rep	CDS	19855357	19855850	.	-	0	Parent=Os09t0510900-01
Chr09	irgsp1_rep	CDS	19855259	19855265	.	-	1	Parent=Os09t0510900-01
Chr09	irgsp1_rep	three_prime_UTR	19855023	19855258	.	-	.	Parent=Os09t0510900-01
Chr09	irgsp1_rep	three_prime_UTR	19854776	19854928	.	-	.	Parent=Os09t0510900-01
Chr09	irgsp1_rep	three_prime_UTR	19854123	19854688	.	-	.	Parent=Os09t0510900-01
Chr09	irgsp1_rep	mRNA	19861263	19866278	.	+	.	ID=Os09t0511000-01;Name=Os09t0511000-01;Locus_id=Os09g0511000;CGSNL Gene Symbol=RLCK276;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 276;Oryzabase Gene Symbol Synonym(s)=OsLysM-RLK10%2C OsRLCK276;Oryzabase Gene Name Synonym(s)=LysM receptor-like kinase 10%2C Receptor-like Cytoplasmic Kinase 276;Note=Similar to LysM receptor-like kinase.;Transcript_evidence=AK065118 (DDBJ%2C Best hit);ORF_evidence=D7UPN3 (UniProt);NIAS_FLcDNA=J013001O13;Oryzabase=10928;TENOR=Os09t0511000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	19861263	19861917	.	+	0	Parent=Os09t0511000-01
Chr09	irgsp1_rep	CDS	19862631	19862664	.	+	2	Parent=Os09t0511000-01
Chr09	irgsp1_rep	CDS	19862854	19862869	.	+	1	Parent=Os09t0511000-01
Chr09	irgsp1_rep	three_prime_UTR	19862870	19863015	.	+	.	Parent=Os09t0511000-01
Chr09	irgsp1_rep	three_prime_UTR	19863244	19863614	.	+	.	Parent=Os09t0511000-01
Chr09	irgsp1_rep	three_prime_UTR	19863859	19863952	.	+	.	Parent=Os09t0511000-01
Chr09	irgsp1_rep	three_prime_UTR	19864042	19864193	.	+	.	Parent=Os09t0511000-01
Chr09	irgsp1_rep	three_prime_UTR	19864696	19864793	.	+	.	Parent=Os09t0511000-01
Chr09	irgsp1_rep	three_prime_UTR	19865115	19865859	.	+	.	Parent=Os09t0511000-01
Chr09	irgsp1_rep	three_prime_UTR	19865964	19866278	.	+	.	Parent=Os09t0511000-01
Chr09	irgsp1_rep	mRNA	19863184	19866238	.	+	.	ID=Os09t0511000-02;Name=Os09t0511000-02;Locus_id=Os09g0511000;CGSNL Gene Symbol=RLCK276;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 276;Oryzabase Gene Symbol Synonym(s)=OsLysM-RLK10%2C OsRLCK276;Oryzabase Gene Name Synonym(s)=LysM receptor-like kinase 10%2C Receptor-like Cytoplasmic Kinase 276;Note=Similar to cDNA clone:001-035-B08%2C full insert sequence.;Transcript_evidence=AK061724 (DDBJ%2C Best hit);ORF_evidence=D7UPN3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-038-B01;Oryzabase=10928;Expression=AK061724;TENOR=Os09t0511000-02;KEGG=Os09t0511000-02
Chr09	irgsp1_rep	five_prime_UTR	19863184	19863224	.	+	.	Parent=Os09t0511000-02
Chr09	irgsp1_rep	CDS	19863225	19863395	.	+	0	Parent=Os09t0511000-02
Chr09	irgsp1_rep	CDS	19863525	19863614	.	+	0	Parent=Os09t0511000-02
Chr09	irgsp1_rep	CDS	19863859	19863952	.	+	0	Parent=Os09t0511000-02
Chr09	irgsp1_rep	CDS	19864042	19864193	.	+	2	Parent=Os09t0511000-02
Chr09	irgsp1_rep	CDS	19864696	19864793	.	+	0	Parent=Os09t0511000-02
Chr09	irgsp1_rep	CDS	19865115	19865250	.	+	1	Parent=Os09t0511000-02
Chr09	irgsp1_rep	CDS	19865761	19865859	.	+	0	Parent=Os09t0511000-02
Chr09	irgsp1_rep	CDS	19865964	19866095	.	+	0	Parent=Os09t0511000-02
Chr09	irgsp1_rep	three_prime_UTR	19866096	19866238	.	+	.	Parent=Os09t0511000-02
Chr09	irgsp1_rep	mRNA	19868099	19868847	.	+	.	ID=Os09t0511200-00;Name=Os09t0511200-00;Locus_id=Os09g0511200;Note=Conserved hypothetical protein.;Transcript_evidence=EU946859 (DDBJ);ORF_evidence=A2Z312 (UniProt);TENOR=Os09t0511200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	19868099	19868794	.	+	0	Parent=Os09t0511200-00
Chr09	irgsp1_rep	three_prime_UTR	19868795	19868847	.	+	.	Parent=Os09t0511200-00
Chr09	irgsp1_rep	mRNA	19874674	19875632	.	+	.	ID=Os09t0511300-00;Name=Os09t0511300-00;Locus_id=Os09g0511300;Note=Conserved hypothetical protein.;Transcript_evidence=AK371792 (DDBJ);ORF_evidence=A3C0J7 (UniProt);TENOR=Os09t0511300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	19874674	19875339	.	+	0	Parent=Os09t0511300-00
Chr09	irgsp1_rep	three_prime_UTR	19875340	19875632	.	+	.	Parent=Os09t0511300-00
Chr09	irgsp1_rep	mRNA	19878398	19882134	.	+	.	ID=Os09t0511500-01;Name=Os09t0511500-01;Locus_id=Os09g0511500;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK060504 (DDBJ%2C Best hit),AK072997 (DDBJ%2C Best hit);ORF_evidence=A3C0J9 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=001-018-E04,J023148H24;TENOR=Os09t0511500-01
Chr09	irgsp1_rep	five_prime_UTR	19878398	19878451	.	+	.	Parent=Os09t0511500-01
Chr09	irgsp1_rep	CDS	19878452	19878620	.	+	0	Parent=Os09t0511500-01
Chr09	irgsp1_rep	CDS	19879356	19879507	.	+	2	Parent=Os09t0511500-01
Chr09	irgsp1_rep	CDS	19880189	19880247	.	+	0	Parent=Os09t0511500-01
Chr09	irgsp1_rep	CDS	19880385	19880410	.	+	1	Parent=Os09t0511500-01
Chr09	irgsp1_rep	CDS	19880500	19880824	.	+	2	Parent=Os09t0511500-01
Chr09	irgsp1_rep	CDS	19881250	19881733	.	+	1	Parent=Os09t0511500-01
Chr09	irgsp1_rep	three_prime_UTR	19881734	19882134	.	+	.	Parent=Os09t0511500-01
Chr09	irgsp1_rep	mRNA	19882716	19888124	.	-	.	ID=Os09t0511600-01;Name=Os09t0511600-01;Locus_id=Os09g0511600;RAP-DB Gene Symbol Synonym(s)=Os9BGlu31;RAP-DB Gene Name Synonym(s)=beta-glucosidase 31;CGSNL Gene Symbol=BGLU31;CGSNL Gene Name=BETA-GLUCOSIDASE 31;Oryzabase Gene Symbol Synonym(s)=Os9bglu31%2C Os9BGlu31;Oryzabase Gene Name Synonym(s)=beta-glucosidase 31;Note=Transglucosidase;Transcript_evidence=AK121935;ORF_evidence=B7F7K7;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase superfamily (IPR017853),Glycoside hydrolase family 1 (IPR001360),Glycosyl hydrolases family 1%2C N-terminal conserved site (IPR033132);NIAS_FLcDNA=J033107A08;Manual Curation=July 30%2C 2020;Literature_PMID=23430256;Oryzabase=12104;Expression=AK121935;TENOR=Os09t0511600-01;KEGG=Os09t0511600-01;Subcellular location=vacuole (GO:0005773)
Chr09	irgsp1_rep	five_prime_UTR	19887895	19888124	.	-	.	Parent=Os09t0511600-01
Chr09	irgsp1_rep	CDS	19887748	19887894	.	-	0	Parent=Os09t0511600-01
Chr09	irgsp1_rep	CDS	19885812	19885875	.	-	0	Parent=Os09t0511600-01
Chr09	irgsp1_rep	CDS	19885647	19885709	.	-	2	Parent=Os09t0511600-01
Chr09	irgsp1_rep	CDS	19885467	19885538	.	-	2	Parent=Os09t0511600-01
Chr09	irgsp1_rep	CDS	19885302	19885373	.	-	2	Parent=Os09t0511600-01
Chr09	irgsp1_rep	CDS	19885118	19885205	.	-	2	Parent=Os09t0511600-01
Chr09	irgsp1_rep	CDS	19884761	19885019	.	-	1	Parent=Os09t0511600-01
Chr09	irgsp1_rep	CDS	19884559	19884674	.	-	0	Parent=Os09t0511600-01
Chr09	irgsp1_rep	CDS	19884244	19884464	.	-	1	Parent=Os09t0511600-01
Chr09	irgsp1_rep	CDS	19884127	19884152	.	-	2	Parent=Os09t0511600-01
Chr09	irgsp1_rep	CDS	19883875	19883989	.	-	0	Parent=Os09t0511600-01
Chr09	irgsp1_rep	CDS	19883489	19883591	.	-	2	Parent=Os09t0511600-01
Chr09	irgsp1_rep	CDS	19883009	19883234	.	-	1	Parent=Os09t0511600-01
Chr09	irgsp1_rep	three_prime_UTR	19882716	19883008	.	-	.	Parent=Os09t0511600-01
Chr09	irgsp1_rep	mRNA	19882650	19882893	.	-	.	ID=Os09t0511600-02;Name=Os09t0511600-02;Locus_id=Os09g0511600;CGSNL Gene Symbol=BGLU31;CGSNL Gene Name=BETA-GLUCOSIDASE 31;Oryzabase Gene Symbol Synonym(s)=Os9bglu31%2C Os9BGlu31;Oryzabase Gene Name Synonym(s)=beta-glucosidase 31;Note=Non-protein coding transcript.;Transcript_evidence=AK105396 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-123-C01;Oryzabase=12104;TENOR=Os09t0511600-02
Chr09	irgsp1_rep	exon	19882650	19882893	.	-	.	Parent=Os09t0511600-02
Chr09	irgsp1_rep	mRNA	19882710	19888081	.	-	.	ID=Os09t0511600-03;Name=Os09t0511600-03;Locus_id=Os09g0511600;CGSNL Gene Symbol=BGLU31;CGSNL Gene Name=BETA-GLUCOSIDASE 31;Oryzabase Gene Symbol Synonym(s)=Os9bglu31%2C Os9BGlu31;Oryzabase Gene Name Synonym(s)=beta-glucosidase 31;Note=Glycoside hydrolase%2C family 1 protein.;Transcript_evidence=AK121679 (DDBJ%2C Best hit);ORF_evidence=B7F7K7 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 1%2C active site (IPR018120);NIAS_FLcDNA=J033069H08;Oryzabase=12104;TENOR=Os09t0511600-03
Chr09	irgsp1_rep	five_prime_UTR	19887895	19888081	.	-	.	Parent=Os09t0511600-03
Chr09	irgsp1_rep	CDS	19887748	19887894	.	-	0	Parent=Os09t0511600-03
Chr09	irgsp1_rep	CDS	19885812	19885875	.	-	0	Parent=Os09t0511600-03
Chr09	irgsp1_rep	CDS	19885647	19885709	.	-	2	Parent=Os09t0511600-03
Chr09	irgsp1_rep	CDS	19885467	19885538	.	-	2	Parent=Os09t0511600-03
Chr09	irgsp1_rep	CDS	19885302	19885373	.	-	2	Parent=Os09t0511600-03
Chr09	irgsp1_rep	CDS	19885118	19885205	.	-	2	Parent=Os09t0511600-03
Chr09	irgsp1_rep	CDS	19884761	19885019	.	-	1	Parent=Os09t0511600-03
Chr09	irgsp1_rep	CDS	19884559	19884674	.	-	0	Parent=Os09t0511600-03
Chr09	irgsp1_rep	CDS	19884244	19884464	.	-	1	Parent=Os09t0511600-03
Chr09	irgsp1_rep	CDS	19884127	19884152	.	-	2	Parent=Os09t0511600-03
Chr09	irgsp1_rep	CDS	19883875	19883989	.	-	0	Parent=Os09t0511600-03
Chr09	irgsp1_rep	CDS	19883489	19883591	.	-	2	Parent=Os09t0511600-03
Chr09	irgsp1_rep	CDS	19883009	19883234	.	-	1	Parent=Os09t0511600-03
Chr09	irgsp1_rep	three_prime_UTR	19882710	19883008	.	-	.	Parent=Os09t0511600-03
Chr09	irgsp1_rep	mRNA	19882710	19888015	.	-	.	ID=Os09t0511600-04;Name=Os09t0511600-04;Locus_id=Os09g0511600;CGSNL Gene Symbol=BGLU31;CGSNL Gene Name=BETA-GLUCOSIDASE 31;Oryzabase Gene Symbol Synonym(s)=Os9bglu31%2C Os9BGlu31;Oryzabase Gene Name Synonym(s)=beta-glucosidase 31;Note=Glycoside hydrolase%2C family 1 protein.;Transcript_evidence=AK102869 (DDBJ%2C Best hit);ORF_evidence=B7F7K7 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 1%2C active site (IPR018120);NIAS_FLcDNA=J033111O12;Oryzabase=12104;TENOR=Os09t0511600-04
Chr09	irgsp1_rep	five_prime_UTR	19887895	19888015	.	-	.	Parent=Os09t0511600-04
Chr09	irgsp1_rep	CDS	19887748	19887894	.	-	0	Parent=Os09t0511600-04
Chr09	irgsp1_rep	CDS	19885812	19885875	.	-	0	Parent=Os09t0511600-04
Chr09	irgsp1_rep	CDS	19885647	19885709	.	-	2	Parent=Os09t0511600-04
Chr09	irgsp1_rep	CDS	19885467	19885538	.	-	2	Parent=Os09t0511600-04
Chr09	irgsp1_rep	CDS	19885302	19885373	.	-	2	Parent=Os09t0511600-04
Chr09	irgsp1_rep	CDS	19885118	19885205	.	-	2	Parent=Os09t0511600-04
Chr09	irgsp1_rep	CDS	19884761	19885019	.	-	1	Parent=Os09t0511600-04
Chr09	irgsp1_rep	CDS	19884559	19884674	.	-	0	Parent=Os09t0511600-04
Chr09	irgsp1_rep	CDS	19884244	19884464	.	-	1	Parent=Os09t0511600-04
Chr09	irgsp1_rep	CDS	19884127	19884152	.	-	2	Parent=Os09t0511600-04
Chr09	irgsp1_rep	CDS	19883875	19883989	.	-	0	Parent=Os09t0511600-04
Chr09	irgsp1_rep	CDS	19883489	19883591	.	-	2	Parent=Os09t0511600-04
Chr09	irgsp1_rep	CDS	19883009	19883234	.	-	1	Parent=Os09t0511600-04
Chr09	irgsp1_rep	three_prime_UTR	19882710	19883008	.	-	.	Parent=Os09t0511600-04
Chr09	irgsp1_rep	mRNA	19900504	19904484	.	-	.	ID=Os09t0511700-01;Name=Os09t0511700-01;Locus_id=Os09g0511700;CGSNL Gene Symbol=BGLU32;CGSNL Gene Name=BETA-GLUCOSIDASE 32;Oryzabase Gene Symbol Synonym(s)=Os9bglu32%2C Os9Bglu32;Oryzabase Gene Name Synonym(s)=beta-glucosidase 32;Note=Similar to Prunasin hydrolase isoform PH C precursor (EC 3.2.1.118).;Transcript_evidence=AK101420 (DDBJ%2C Best hit);ORF_evidence=Q0J0G2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 1%2C active site (IPR018120);NIAS_FLcDNA=J033038B10;Oryzabase=12105;Expression=AK101420;TENOR=Os09t0511700-01;KEGG=Os09t0511700-01 (EC:3.2.1.118)
Chr09	irgsp1_rep	five_prime_UTR	19904478	19904484	.	-	.	Parent=Os09t0511700-01
Chr09	irgsp1_rep	CDS	19904328	19904477	.	-	0	Parent=Os09t0511700-01
Chr09	irgsp1_rep	CDS	19904023	19904086	.	-	0	Parent=Os09t0511700-01
Chr09	irgsp1_rep	CDS	19903649	19903707	.	-	2	Parent=Os09t0511700-01
Chr09	irgsp1_rep	CDS	19903475	19903550	.	-	0	Parent=Os09t0511700-01
Chr09	irgsp1_rep	CDS	19903327	19903398	.	-	2	Parent=Os09t0511700-01
Chr09	irgsp1_rep	CDS	19903153	19903240	.	-	2	Parent=Os09t0511700-01
Chr09	irgsp1_rep	CDS	19902729	19902984	.	-	1	Parent=Os09t0511700-01
Chr09	irgsp1_rep	CDS	19902541	19902600	.	-	0	Parent=Os09t0511700-01
Chr09	irgsp1_rep	three_prime_UTR	19902475	19902540	.	-	.	Parent=Os09t0511700-01
Chr09	irgsp1_rep	three_prime_UTR	19902075	19902289	.	-	.	Parent=Os09t0511700-01
Chr09	irgsp1_rep	three_prime_UTR	19901904	19901929	.	-	.	Parent=Os09t0511700-01
Chr09	irgsp1_rep	three_prime_UTR	19901701	19901794	.	-	.	Parent=Os09t0511700-01
Chr09	irgsp1_rep	three_prime_UTR	19901500	19901602	.	-	.	Parent=Os09t0511700-01
Chr09	irgsp1_rep	three_prime_UTR	19900504	19901292	.	-	.	Parent=Os09t0511700-01
Chr09	irgsp1_rep	mRNA	19908731	19914481	.	-	.	ID=Os09t0511900-01;Name=Os09t0511900-01;Locus_id=Os09g0511900;RAP-DB Gene Symbol Synonym(s)=Os9BGlu33;RAP-DB Gene Name Synonym(s)=&beta%3B-Glucosidase 33%2C beta-glucosidase 33;CGSNL Gene Symbol=BGLU33;CGSNL Gene Name=BETA-GLUCOSIDASE 33;Oryzabase Gene Symbol Synonym(s)=Os9bglu33%2C Os9Bglu33%2C 9bglu33;Oryzabase Gene Name Synonym(s)=beta-glucosidase 33;Note=Glycosyl hydrolase family 1 (GH1) beta-glucosidase%2C Seed germination%2C Root elongation%2C Drought tolerance;Transcript_evidence=AK066336;ORF_evidence=Q0J0G1;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase superfamily (IPR017853),Glycoside hydrolase family 1 (IPR001360),Glycosyl hydrolases family 1%2C N-terminal conserved site (IPR033132);NIAS_FLcDNA=J013063O11;Manual Curation=February 5%2C 2020;Literature_PMID=30848355;Oryzabase=12106;TENOR=Os09t0511900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	19914469	19914481	.	-	.	Parent=Os09t0511900-01
Chr09	irgsp1_rep	CDS	19914319	19914468	.	-	0	Parent=Os09t0511900-01
Chr09	irgsp1_rep	CDS	19914019	19914082	.	-	0	Parent=Os09t0511900-01
Chr09	irgsp1_rep	CDS	19913821	19913879	.	-	2	Parent=Os09t0511900-01
Chr09	irgsp1_rep	CDS	19913663	19913738	.	-	0	Parent=Os09t0511900-01
Chr09	irgsp1_rep	CDS	19913510	19913581	.	-	2	Parent=Os09t0511900-01
Chr09	irgsp1_rep	CDS	19913341	19913428	.	-	2	Parent=Os09t0511900-01
Chr09	irgsp1_rep	CDS	19912751	19913006	.	-	1	Parent=Os09t0511900-01
Chr09	irgsp1_rep	CDS	19912534	19912649	.	-	0	Parent=Os09t0511900-01
Chr09	irgsp1_rep	CDS	19911450	19911661	.	-	1	Parent=Os09t0511900-01
Chr09	irgsp1_rep	CDS	19911282	19911295	.	-	2	Parent=Os09t0511900-01
Chr09	irgsp1_rep	CDS	19910946	19911039	.	-	0	Parent=Os09t0511900-01
Chr09	irgsp1_rep	CDS	19910371	19910473	.	-	2	Parent=Os09t0511900-01
Chr09	irgsp1_rep	CDS	19909123	19909330	.	-	1	Parent=Os09t0511900-01
Chr09	irgsp1_rep	three_prime_UTR	19908731	19909122	.	-	.	Parent=Os09t0511900-01
Chr09	irgsp1_rep	mRNA	19917485	19920309	.	+	.	ID=Os09t0512000-01;Name=Os09t0512000-01;Locus_id=Os09g0512000;Note=SecY protein family protein.;Transcript_evidence=AK101417 (DDBJ%2C Best hit);ORF_evidence=longestORF;GO=Biological Process: protein transport (GO:0015031),Cellular Component: membrane (GO:0016020),Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450);InterPro=SecY protein (IPR002208),SecY subunit domain (IPR023201);NIAS_FLcDNA=J033037N09;Expression=AK101417;TENOR=Os09t0512000-01;KEGG=Os09t0512000-01
Chr09	irgsp1_rep	five_prime_UTR	19917485	19917600	.	+	.	Parent=Os09t0512000-01
Chr09	irgsp1_rep	five_prime_UTR	19918084	19918111	.	+	.	Parent=Os09t0512000-01
Chr09	irgsp1_rep	CDS	19918112	19918452	.	+	0	Parent=Os09t0512000-01
Chr09	irgsp1_rep	CDS	19918649	19918858	.	+	1	Parent=Os09t0512000-01
Chr09	irgsp1_rep	CDS	19918938	19919289	.	+	1	Parent=Os09t0512000-01
Chr09	irgsp1_rep	CDS	19919386	19919510	.	+	0	Parent=Os09t0512000-01
Chr09	irgsp1_rep	CDS	19919644	19919782	.	+	1	Parent=Os09t0512000-01
Chr09	irgsp1_rep	CDS	19919883	19920116	.	+	0	Parent=Os09t0512000-01
Chr09	irgsp1_rep	three_prime_UTR	19920117	19920309	.	+	.	Parent=Os09t0512000-01
Chr09	irgsp1_rep	mRNA	19918154	19919534	.	-	.	ID=Os09t0512066-00;Name=Os09t0512066-00;Locus_id=Os09g0512066;Note=Hypothetical protein.;Transcript_evidence=tplb0043d18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0512066-00
Chr09	irgsp1_rep	five_prime_UTR	19919359	19919534	.	-	.	Parent=Os09t0512066-00
Chr09	irgsp1_rep	five_prime_UTR	19918918	19919262	.	-	.	Parent=Os09t0512066-00
Chr09	irgsp1_rep	five_prime_UTR	19918725	19918842	.	-	.	Parent=Os09t0512066-00
Chr09	irgsp1_rep	CDS	19918660	19918724	.	-	0	Parent=Os09t0512066-00
Chr09	irgsp1_rep	CDS	19918192	19918468	.	-	1	Parent=Os09t0512066-00
Chr09	irgsp1_rep	three_prime_UTR	19918154	19918191	.	-	.	Parent=Os09t0512066-00
Chr09	irgsp1_rep	mRNA	19922979	19927555	.	+	.	ID=Os09t0512200-01;Name=Os09t0512200-01;Locus_id=Os09g0512200;Oryzabase Gene Symbol Synonym(s)=OsRFPHC-5%2C RFPHC-5;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPHC-5%2C RING-HC protein 5;Note=AMP-dependent synthetase/ligase domain containing protein.;Transcript_evidence=AK065469 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873);NIAS_FLcDNA=J013009B01;Oryzabase=11789;TENOR=Os09t0512200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	19922979	19923022	.	+	.	Parent=Os09t0512200-01
Chr09	irgsp1_rep	five_prime_UTR	19923123	19923183	.	+	.	Parent=Os09t0512200-01
Chr09	irgsp1_rep	five_prime_UTR	19923271	19923358	.	+	.	Parent=Os09t0512200-01
Chr09	irgsp1_rep	five_prime_UTR	19925011	19925817	.	+	.	Parent=Os09t0512200-01
Chr09	irgsp1_rep	five_prime_UTR	19926353	19926456	.	+	.	Parent=Os09t0512200-01
Chr09	irgsp1_rep	CDS	19926457	19926511	.	+	0	Parent=Os09t0512200-01
Chr09	irgsp1_rep	CDS	19927182	19927354	.	+	2	Parent=Os09t0512200-01
Chr09	irgsp1_rep	three_prime_UTR	19927355	19927555	.	+	.	Parent=Os09t0512200-01
Chr09	irgsp1_rep	mRNA	19943524	19948655	.	+	.	ID=Os09t0512700-01;Name=Os09t0512700-01;Locus_id=Os09g0512700;Oryzabase Gene Symbol Synonym(s)=NEF;Oryzabase Gene Name Synonym(s)=Fes1-like gene;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK059516 (DDBJ%2C Best hit);ORF_evidence=XP_002877838.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Nucleotide exchange factor Fes1 (IPR013918),Armadillo-type fold (IPR016024);NIAS_FLcDNA=001-029-B12;Oryzabase=10091;Expression=AK059516;TENOR=Os09t0512700-01;KEGG=Os09t0512700-01
Chr09	irgsp1_rep	five_prime_UTR	19943524	19943576	.	+	.	Parent=Os09t0512700-01
Chr09	irgsp1_rep	CDS	19943577	19943874	.	+	0	Parent=Os09t0512700-01
Chr09	irgsp1_rep	CDS	19944255	19944346	.	+	2	Parent=Os09t0512700-01
Chr09	irgsp1_rep	CDS	19945916	19946066	.	+	0	Parent=Os09t0512700-01
Chr09	irgsp1_rep	CDS	19946845	19946972	.	+	2	Parent=Os09t0512700-01
Chr09	irgsp1_rep	CDS	19947165	19947323	.	+	0	Parent=Os09t0512700-01
Chr09	irgsp1_rep	CDS	19947391	19947573	.	+	0	Parent=Os09t0512700-01
Chr09	irgsp1_rep	CDS	19948044	19948244	.	+	0	Parent=Os09t0512700-01
Chr09	irgsp1_rep	CDS	19948335	19948355	.	+	0	Parent=Os09t0512700-01
Chr09	irgsp1_rep	three_prime_UTR	19948356	19948655	.	+	.	Parent=Os09t0512700-01
Chr09	irgsp1_rep	mRNA	19950775	19953947	.	+	.	ID=Os09t0512800-00;Name=Os09t0512800-00;Locus_id=Os09g0512800;Oryzabase Gene Symbol Synonym(s)=OsSTA231;Note=Similar to snRK1-interacting protein 1.;Transcript_evidence=CT835829 (DDBJ%2C Best hit);ORF_evidence=NP_001151884.1 (RefSeq);Oryzabase=19503;TENOR=Os09t0512800-00;KEGG=Os09t0512800-00
Chr09	irgsp1_rep	five_prime_UTR	19950775	19950858	.	+	.	Parent=Os09t0512800-00
Chr09	irgsp1_rep	CDS	19950859	19951142	.	+	0	Parent=Os09t0512800-00
Chr09	irgsp1_rep	CDS	19952709	19952746	.	+	1	Parent=Os09t0512800-00
Chr09	irgsp1_rep	CDS	19953234	19953325	.	+	2	Parent=Os09t0512800-00
Chr09	irgsp1_rep	CDS	19953480	19953626	.	+	0	Parent=Os09t0512800-00
Chr09	irgsp1_rep	three_prime_UTR	19953627	19953947	.	+	.	Parent=Os09t0512800-00
Chr09	irgsp1_rep	mRNA	19955723	19957644	.	+	.	ID=Os09t0512900-01;Name=Os09t0512900-01;Locus_id=Os09g0512900;Note=Similar to arabinogalactan protein.;Transcript_evidence=AK066925 (DDBJ%2C Best hit);ORF_evidence=NP_001147556.1 (RefSeq);NIAS_FLcDNA=J013092F14;Expression=AK066925;TENOR=Os09t0512900-01;KEGG=Os09t0512900-01
Chr09	irgsp1_rep	five_prime_UTR	19955723	19955960	.	+	.	Parent=Os09t0512900-01
Chr09	irgsp1_rep	CDS	19955961	19956206	.	+	0	Parent=Os09t0512900-01
Chr09	irgsp1_rep	three_prime_UTR	19956207	19956748	.	+	.	Parent=Os09t0512900-01
Chr09	irgsp1_rep	three_prime_UTR	19956874	19956945	.	+	.	Parent=Os09t0512900-01
Chr09	irgsp1_rep	three_prime_UTR	19957030	19957250	.	+	.	Parent=Os09t0512900-01
Chr09	irgsp1_rep	three_prime_UTR	19957338	19957644	.	+	.	Parent=Os09t0512900-01
Chr09	irgsp1_rep	mRNA	19955855	19957705	.	+	.	ID=Os09t0512900-02;Name=Os09t0512900-02;Locus_id=Os09g0512900;Note=Similar to arabinogalactan protein.;Transcript_evidence=AK061814 (DDBJ%2C Best hit);ORF_evidence=NP_001147556.1 (RefSeq);NIAS_FLcDNA=001-040-B04;Expression=AK061814;TENOR=Os09t0512900-02;KEGG=Os09t0512900-02
Chr09	irgsp1_rep	five_prime_UTR	19955855	19955960	.	+	.	Parent=Os09t0512900-02
Chr09	irgsp1_rep	CDS	19955961	19956070	.	+	0	Parent=Os09t0512900-02
Chr09	irgsp1_rep	CDS	19956637	19956748	.	+	1	Parent=Os09t0512900-02
Chr09	irgsp1_rep	CDS	19956874	19956945	.	+	0	Parent=Os09t0512900-02
Chr09	irgsp1_rep	CDS	19957030	19957250	.	+	0	Parent=Os09t0512900-02
Chr09	irgsp1_rep	CDS	19957338	19957443	.	+	1	Parent=Os09t0512900-02
Chr09	irgsp1_rep	three_prime_UTR	19957444	19957705	.	+	.	Parent=Os09t0512900-02
Chr09	irgsp1_rep	mRNA	19955895	19957739	.	+	.	ID=Os09t0512900-03;Name=Os09t0512900-03;Locus_id=Os09g0512900;Note=Similar to arabinogalactan protein.;Transcript_evidence=AK104595 (DDBJ%2C Best hit);ORF_evidence=NP_001147556.1 (RefSeq);NIAS_FLcDNA=006-308-D09;Expression=AK104595;TENOR=Os09t0512900-03;KEGG=Os09t0512900-03
Chr09	irgsp1_rep	five_prime_UTR	19955895	19955960	.	+	.	Parent=Os09t0512900-03
Chr09	irgsp1_rep	CDS	19955961	19956070	.	+	0	Parent=Os09t0512900-03
Chr09	irgsp1_rep	CDS	19956637	19956748	.	+	1	Parent=Os09t0512900-03
Chr09	irgsp1_rep	CDS	19956874	19956945	.	+	0	Parent=Os09t0512900-03
Chr09	irgsp1_rep	CDS	19957030	19957250	.	+	0	Parent=Os09t0512900-03
Chr09	irgsp1_rep	CDS	19957338	19957443	.	+	1	Parent=Os09t0512900-03
Chr09	irgsp1_rep	three_prime_UTR	19957444	19957739	.	+	.	Parent=Os09t0512900-03
Chr09	irgsp1_rep	mRNA	19960927	19963905	.	-	.	ID=Os09t0512950-01;Name=Os09t0512950-01;Locus_id=Os09g0512950;Note=Hypothetical gene.;Transcript_evidence=AK287470 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J043022B08;TENOR=Os09t0512950-01;KEGG=Os09t0512950-01
Chr09	irgsp1_rep	five_prime_UTR	19962141	19963905	.	-	.	Parent=Os09t0512950-01
Chr09	irgsp1_rep	CDS	19961898	19962140	.	-	0	Parent=Os09t0512950-01
Chr09	irgsp1_rep	three_prime_UTR	19960927	19961897	.	-	.	Parent=Os09t0512950-01
Chr09	irgsp1_rep	mRNA	19961104	19964106	.	+	.	ID=Os09t0513000-01;Name=Os09t0513000-01;Locus_id=Os09g0513000;RAP-DB Gene Symbol Synonym(s)=XB25%2C OsBIANK1;RAP-DB Gene Name Synonym(s)=XA21 binding protein 25;Oryzabase Gene Symbol Synonym(s)=OsBIANK1%2C BIANK1%2C XB25;Oryzabase Gene Name Synonym(s)=XA21 binding protein 25;Note=XA21 binding protein 25%2C Plant-specific ankyrinrepeat (PANK) family protein%2C XA21-mediated disease resistance;Transcript_evidence=AK062078,AK098858,AK121370;ORF_evidence=Q69IN8;GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat-containing domain superfamily (IPR036770),STI1 domain (IPR041243),Ankyrin repeat-containing domain (IPR020683),Ankyrin repeat (IPR002110);NIAS_FLcDNA=001-044-F07,J013000M21,J023125M12;Manual Curation=August 3%2C 2020;Literature_PMID=23206229;Oryzabase=21676;Expression=AK062078;TENOR=Os09t0513000-01;KEGG=Os09t0513000-01
Chr09	irgsp1_rep	five_prime_UTR	19961104	19961342	.	+	.	Parent=Os09t0513000-01
Chr09	irgsp1_rep	CDS	19961343	19961349	.	+	0	Parent=Os09t0513000-01
Chr09	irgsp1_rep	CDS	19961902	19962020	.	+	2	Parent=Os09t0513000-01
Chr09	irgsp1_rep	CDS	19962134	19962343	.	+	0	Parent=Os09t0513000-01
Chr09	irgsp1_rep	CDS	19962428	19962576	.	+	0	Parent=Os09t0513000-01
Chr09	irgsp1_rep	CDS	19962654	19962825	.	+	1	Parent=Os09t0513000-01
Chr09	irgsp1_rep	CDS	19963389	19963481	.	+	0	Parent=Os09t0513000-01
Chr09	irgsp1_rep	CDS	19963588	19963727	.	+	0	Parent=Os09t0513000-01
Chr09	irgsp1_rep	CDS	19963818	19963917	.	+	1	Parent=Os09t0513000-01
Chr09	irgsp1_rep	three_prime_UTR	19963918	19964106	.	+	.	Parent=Os09t0513000-01
Chr09	irgsp1_rep	mRNA	19965263	19970151	.	+	.	ID=Os09t0513100-01;Name=Os09t0513100-01;Locus_id=Os09g0513100;Note=Similar to Phospholipase A1.;Transcript_evidence=AK120151 (DDBJ%2C Best hit);ORF_evidence=B6T3X6 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: O-acyltransferase activity (GO:0008374);InterPro=Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase (IPR003386);NIAS_FLcDNA=J013029N13;TENOR=Os09t0513100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	19965263	19965344	.	+	.	Parent=Os09t0513100-01
Chr09	irgsp1_rep	CDS	19965345	19965636	.	+	0	Parent=Os09t0513100-01
Chr09	irgsp1_rep	CDS	19965742	19965833	.	+	2	Parent=Os09t0513100-01
Chr09	irgsp1_rep	CDS	19966426	19966553	.	+	0	Parent=Os09t0513100-01
Chr09	irgsp1_rep	CDS	19966686	19966719	.	+	1	Parent=Os09t0513100-01
Chr09	irgsp1_rep	three_prime_UTR	19966720	19966816	.	+	.	Parent=Os09t0513100-01
Chr09	irgsp1_rep	three_prime_UTR	19966904	19966955	.	+	.	Parent=Os09t0513100-01
Chr09	irgsp1_rep	three_prime_UTR	19967060	19967160	.	+	.	Parent=Os09t0513100-01
Chr09	irgsp1_rep	three_prime_UTR	19967643	19967819	.	+	.	Parent=Os09t0513100-01
Chr09	irgsp1_rep	three_prime_UTR	19968436	19968593	.	+	.	Parent=Os09t0513100-01
Chr09	irgsp1_rep	three_prime_UTR	19968974	19969028	.	+	.	Parent=Os09t0513100-01
Chr09	irgsp1_rep	three_prime_UTR	19969120	19970151	.	+	.	Parent=Os09t0513100-01
Chr09	irgsp1_rep	mRNA	19966919	19970151	.	+	.	ID=Os09t0513100-02;Name=Os09t0513100-02;Locus_id=Os09g0513100;Note=Similar to phospholipase A1.;Transcript_evidence=AK060173 (DDBJ%2C Best hit);ORF_evidence=B6T3X6 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: O-acyltransferase activity (GO:0008374);InterPro=Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase (IPR003386);NIAS_FLcDNA=006-311-G09;Expression=AK060173;TENOR=Os09t0513100-02;KEGG=Os09t0513100-02
Chr09	irgsp1_rep	CDS	19966919	19966955	.	+	0	Parent=Os09t0513100-02
Chr09	irgsp1_rep	CDS	19967060	19967160	.	+	2	Parent=Os09t0513100-02
Chr09	irgsp1_rep	CDS	19967643	19967819	.	+	0	Parent=Os09t0513100-02
Chr09	irgsp1_rep	CDS	19968436	19968593	.	+	0	Parent=Os09t0513100-02
Chr09	irgsp1_rep	CDS	19968974	19969028	.	+	1	Parent=Os09t0513100-02
Chr09	irgsp1_rep	CDS	19969120	19969173	.	+	0	Parent=Os09t0513100-02
Chr09	irgsp1_rep	CDS	19969702	19969872	.	+	0	Parent=Os09t0513100-02
Chr09	irgsp1_rep	three_prime_UTR	19969873	19970151	.	+	.	Parent=Os09t0513100-02
Chr09	irgsp1_rep	mRNA	19971392	19975282	.	-	.	ID=Os09t0513200-00;Name=Os09t0513200-00;Locus_id=Os09g0513200;Note=Similar to Solute carrier family 35%2C member F1.;Transcript_evidence=BT039861 (DDBJ);ORF_evidence=B6U001 (UniProt);InterPro=Protein of unknown function DUF914%2C eukaryotic (IPR009262);TENOR=Os09t0513200-00;KEGG=Os09t0513200-00
Chr09	irgsp1_rep	five_prime_UTR	19975258	19975282	.	-	.	Parent=Os09t0513200-00
Chr09	irgsp1_rep	CDS	19975137	19975257	.	-	0	Parent=Os09t0513200-00
Chr09	irgsp1_rep	CDS	19974489	19974583	.	-	2	Parent=Os09t0513200-00
Chr09	irgsp1_rep	CDS	19973870	19973927	.	-	0	Parent=Os09t0513200-00
Chr09	irgsp1_rep	CDS	19973556	19973750	.	-	2	Parent=Os09t0513200-00
Chr09	irgsp1_rep	CDS	19973195	19973271	.	-	2	Parent=Os09t0513200-00
Chr09	irgsp1_rep	CDS	19972837	19972919	.	-	0	Parent=Os09t0513200-00
Chr09	irgsp1_rep	CDS	19972518	19972569	.	-	1	Parent=Os09t0513200-00
Chr09	irgsp1_rep	CDS	19972252	19972320	.	-	0	Parent=Os09t0513200-00
Chr09	irgsp1_rep	CDS	19972088	19972174	.	-	0	Parent=Os09t0513200-00
Chr09	irgsp1_rep	CDS	19971926	19971990	.	-	0	Parent=Os09t0513200-00
Chr09	irgsp1_rep	CDS	19971395	19971539	.	-	1	Parent=Os09t0513200-00
Chr09	irgsp1_rep	three_prime_UTR	19971392	19971394	.	-	.	Parent=Os09t0513200-00
Chr09	irgsp1_rep	mRNA	19979163	19988893	.	+	.	ID=Os09t0513400-01;Name=Os09t0513400-01;Locus_id=Os09g0513400;Note=Hypothetical protein.;Transcript_evidence=AK119919 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-183-G04;Expression=AK119919;TENOR=Os09t0513400-01;KEGG=Os09t0513400-01
Chr09	irgsp1_rep	five_prime_UTR	19979163	19979314	.	+	.	Parent=Os09t0513400-01
Chr09	irgsp1_rep	five_prime_UTR	19979436	19979604	.	+	.	Parent=Os09t0513400-01
Chr09	irgsp1_rep	five_prime_UTR	19981216	19981407	.	+	.	Parent=Os09t0513400-01
Chr09	irgsp1_rep	five_prime_UTR	19981922	19981982	.	+	.	Parent=Os09t0513400-01
Chr09	irgsp1_rep	CDS	19981983	19982000	.	+	0	Parent=Os09t0513400-01
Chr09	irgsp1_rep	CDS	19987044	19987103	.	+	0	Parent=Os09t0513400-01
Chr09	irgsp1_rep	CDS	19987237	19987303	.	+	0	Parent=Os09t0513400-01
Chr09	irgsp1_rep	CDS	19987385	19987512	.	+	2	Parent=Os09t0513400-01
Chr09	irgsp1_rep	three_prime_UTR	19987513	19987635	.	+	.	Parent=Os09t0513400-01
Chr09	irgsp1_rep	three_prime_UTR	19988000	19988326	.	+	.	Parent=Os09t0513400-01
Chr09	irgsp1_rep	three_prime_UTR	19988569	19988893	.	+	.	Parent=Os09t0513400-01
Chr09	irgsp1_rep	mRNA	19980206	19986378	.	-	.	ID=Os09t0513500-00;Name=Os09t0513500-00;Locus_id=Os09g0513500;CGSNL Gene Symbol=FTL4;CGSNL Gene Name=FLOWERING TIME LIKE GENE 4;Oryzabase Gene Symbol Synonym(s)=OsFT%2C osFT%2C FT-L 4%2C OsFTL4%2C FT-L4;Oryzabase Gene Name Synonym(s)=FT-like gene 4;Note=Similar to ZCN24.;Transcript_evidence=CT841571 (DDBJ%2C Best hit);ORF_evidence=A9LLZ6 (UniProt);InterPro=Phosphatidylethanolamine-binding%2C conserved site (IPR001858),Phosphatidylethanolamine-binding protein PEBP (IPR008914);Oryzabase=11226;TENOR=Os09t0513500-00;KEGG=Os09t0513500-00
Chr09	irgsp1_rep	five_prime_UTR	19986302	19986378	.	-	.	Parent=Os09t0513500-00
Chr09	irgsp1_rep	CDS	19986104	19986301	.	-	0	Parent=Os09t0513500-00
Chr09	irgsp1_rep	CDS	19985021	19985082	.	-	0	Parent=Os09t0513500-00
Chr09	irgsp1_rep	CDS	19983477	19983517	.	-	1	Parent=Os09t0513500-00
Chr09	irgsp1_rep	CDS	19982455	19982459	.	-	2	Parent=Os09t0513500-00
Chr09	irgsp1_rep	three_prime_UTR	19982417	19982454	.	-	.	Parent=Os09t0513500-00
Chr09	irgsp1_rep	three_prime_UTR	19981183	19981322	.	-	.	Parent=Os09t0513500-00
Chr09	irgsp1_rep	three_prime_UTR	19980206	19980496	.	-	.	Parent=Os09t0513500-00
Chr09	irgsp1_rep	mRNA	19991623	19995864	.	+	.	ID=Os09t0513600-01;Name=Os09t0513600-01;Locus_id=Os09g0513600;CGSNL Gene Symbol=RLCK277;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 277;Oryzabase Gene Symbol Synonym(s)=OsRLCK277;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 277;Note=Similar to predicted protein.;Transcript_evidence=AK242851 (DDBJ%2C Best hit);ORF_evidence=Q84P43 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Tyrosine-protein kinase%2C active site (IPR008266),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J090073B20;Oryzabase=18963;TENOR=Os09t0513600-01;KEGG=Os09t0513600-01
Chr09	irgsp1_rep	five_prime_UTR	19991623	19992791	.	+	.	Parent=Os09t0513600-01
Chr09	irgsp1_rep	CDS	19992792	19992882	.	+	0	Parent=Os09t0513600-01
Chr09	irgsp1_rep	CDS	19993289	19993527	.	+	2	Parent=Os09t0513600-01
Chr09	irgsp1_rep	CDS	19993644	19993770	.	+	0	Parent=Os09t0513600-01
Chr09	irgsp1_rep	CDS	19993974	19994251	.	+	2	Parent=Os09t0513600-01
Chr09	irgsp1_rep	three_prime_UTR	19994252	19994264	.	+	.	Parent=Os09t0513600-01
Chr09	irgsp1_rep	three_prime_UTR	19994545	19994677	.	+	.	Parent=Os09t0513600-01
Chr09	irgsp1_rep	three_prime_UTR	19995089	19995175	.	+	.	Parent=Os09t0513600-01
Chr09	irgsp1_rep	three_prime_UTR	19995297	19995864	.	+	.	Parent=Os09t0513600-01
Chr09	irgsp1_rep	mRNA	19997001	19999794	.	+	.	ID=Os09t0513700-01;Name=Os09t0513700-01;Locus_id=Os09g0513700;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK071999 (DDBJ%2C Best hit);ORF_evidence=B8BDI3 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013094N11;Expression=AK071999;TENOR=Os09t0513700-01;KEGG=Os09t0513700-01
Chr09	irgsp1_rep	five_prime_UTR	19997001	19997165	.	+	.	Parent=Os09t0513700-01
Chr09	irgsp1_rep	CDS	19997166	19997316	.	+	0	Parent=Os09t0513700-01
Chr09	irgsp1_rep	CDS	19997432	19997529	.	+	2	Parent=Os09t0513700-01
Chr09	irgsp1_rep	CDS	19997626	19997677	.	+	0	Parent=Os09t0513700-01
Chr09	irgsp1_rep	CDS	19998016	19998086	.	+	2	Parent=Os09t0513700-01
Chr09	irgsp1_rep	CDS	19998185	19998275	.	+	0	Parent=Os09t0513700-01
Chr09	irgsp1_rep	CDS	19998358	19998433	.	+	2	Parent=Os09t0513700-01
Chr09	irgsp1_rep	CDS	19998551	19998629	.	+	1	Parent=Os09t0513700-01
Chr09	irgsp1_rep	CDS	19999113	19999622	.	+	0	Parent=Os09t0513700-01
Chr09	irgsp1_rep	three_prime_UTR	19999623	19999794	.	+	.	Parent=Os09t0513700-01
Chr09	irgsp1_rep	mRNA	19997060	19999811	.	+	.	ID=Os09t0513700-02;Name=Os09t0513700-02;Locus_id=Os09g0513700;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK099033 (DDBJ%2C Best hit);ORF_evidence=B8BDI3 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013129L11;Expression=AK099033;TENOR=Os09t0513700-02;KEGG=Os09t0513700-02
Chr09	irgsp1_rep	five_prime_UTR	19997060	19997165	.	+	.	Parent=Os09t0513700-02
Chr09	irgsp1_rep	CDS	19997166	19997316	.	+	0	Parent=Os09t0513700-02
Chr09	irgsp1_rep	CDS	19997432	19997529	.	+	2	Parent=Os09t0513700-02
Chr09	irgsp1_rep	CDS	19997626	19997677	.	+	0	Parent=Os09t0513700-02
Chr09	irgsp1_rep	CDS	19998016	19998086	.	+	2	Parent=Os09t0513700-02
Chr09	irgsp1_rep	CDS	19998185	19998275	.	+	0	Parent=Os09t0513700-02
Chr09	irgsp1_rep	CDS	19998358	19998433	.	+	2	Parent=Os09t0513700-02
Chr09	irgsp1_rep	CDS	19998551	19998629	.	+	1	Parent=Os09t0513700-02
Chr09	irgsp1_rep	CDS	19999113	19999622	.	+	0	Parent=Os09t0513700-02
Chr09	irgsp1_rep	three_prime_UTR	19999623	19999811	.	+	.	Parent=Os09t0513700-02
Chr09	irgsp1_rep	mRNA	20001090	20006561	.	+	.	ID=Os09t0513800-01;Name=Os09t0513800-01;Locus_id=Os09g0513800;Note=Similar to H0425E08.1 protein.;Transcript_evidence=AK106673 (DDBJ%2C Best hit);ORF_evidence=Q01IA7 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RanBP2-type (IPR001876),Zinc finger%2C CCHC-type (IPR001878),Zinc finger%2C C6HC-type (IPR002867);NIAS_FLcDNA=002-114-A03;TENOR=Os09t0513800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	20001090	20001362	.	+	.	Parent=Os09t0513800-01
Chr09	irgsp1_rep	CDS	20001363	20001398	.	+	0	Parent=Os09t0513800-01
Chr09	irgsp1_rep	CDS	20002102	20002223	.	+	0	Parent=Os09t0513800-01
Chr09	irgsp1_rep	CDS	20002474	20002576	.	+	1	Parent=Os09t0513800-01
Chr09	irgsp1_rep	CDS	20002710	20002800	.	+	0	Parent=Os09t0513800-01
Chr09	irgsp1_rep	CDS	20003026	20003198	.	+	2	Parent=Os09t0513800-01
Chr09	irgsp1_rep	CDS	20003412	20003513	.	+	0	Parent=Os09t0513800-01
Chr09	irgsp1_rep	CDS	20003600	20003688	.	+	0	Parent=Os09t0513800-01
Chr09	irgsp1_rep	CDS	20003859	20003966	.	+	1	Parent=Os09t0513800-01
Chr09	irgsp1_rep	CDS	20004061	20004151	.	+	1	Parent=Os09t0513800-01
Chr09	irgsp1_rep	CDS	20004338	20004427	.	+	0	Parent=Os09t0513800-01
Chr09	irgsp1_rep	CDS	20004873	20004920	.	+	0	Parent=Os09t0513800-01
Chr09	irgsp1_rep	CDS	20005099	20005170	.	+	0	Parent=Os09t0513800-01
Chr09	irgsp1_rep	CDS	20005247	20005340	.	+	0	Parent=Os09t0513800-01
Chr09	irgsp1_rep	CDS	20005416	20005560	.	+	2	Parent=Os09t0513800-01
Chr09	irgsp1_rep	CDS	20005875	20006145	.	+	1	Parent=Os09t0513800-01
Chr09	irgsp1_rep	three_prime_UTR	20006146	20006561	.	+	.	Parent=Os09t0513800-01
Chr09	irgsp1_rep	mRNA	20005226	20005362	.	-	.	ID=Os09t0513850-00;Name=Os09t0513850-00;Locus_id=Os09g0513850;Note=Non-protein coding transcript.;Transcript_evidence=AM939994 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0513850-00
Chr09	irgsp1_rep	exon	20005226	20005362	.	-	.	Parent=Os09t0513850-00
Chr09	irgsp1_rep	mRNA	20006924	20007672	.	+	.	ID=Os09t0513900-01;Name=Os09t0513900-01;Locus_id=Os09g0513900;Note=Conserved hypothetical protein.;Transcript_evidence=AK107699 (DDBJ%2C Best hit);ORF_evidence=B9G4J1 (UniProt);NIAS_FLcDNA=002-132-C09;Oryzabase=22532;TENOR=Os09t0513900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	20006924	20007177	.	+	.	Parent=Os09t0513900-01
Chr09	irgsp1_rep	CDS	20007178	20007239	.	+	0	Parent=Os09t0513900-01
Chr09	irgsp1_rep	CDS	20007342	20007648	.	+	1	Parent=Os09t0513900-01
Chr09	irgsp1_rep	three_prime_UTR	20007649	20007672	.	+	.	Parent=Os09t0513900-01
Chr09	irgsp1_rep	mRNA	20011523	20017659	.	+	.	ID=Os09t0514100-01;Name=Os09t0514100-01;Locus_id=Os09g0514100;Note=Similar to oxidoreductase.;Transcript_evidence=AK106812 (DDBJ%2C Best hit);ORF_evidence=NP_001147594.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FAD dependent oxidoreductase (IPR006076);NIAS_FLcDNA=002-116-C11;TENOR=Os09t0514100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	20011523	20011601	.	+	.	Parent=Os09t0514100-01
Chr09	irgsp1_rep	CDS	20011602	20012057	.	+	0	Parent=Os09t0514100-01
Chr09	irgsp1_rep	three_prime_UTR	20012058	20012167	.	+	.	Parent=Os09t0514100-01
Chr09	irgsp1_rep	three_prime_UTR	20012559	20012773	.	+	.	Parent=Os09t0514100-01
Chr09	irgsp1_rep	three_prime_UTR	20012851	20012921	.	+	.	Parent=Os09t0514100-01
Chr09	irgsp1_rep	three_prime_UTR	20013064	20013223	.	+	.	Parent=Os09t0514100-01
Chr09	irgsp1_rep	three_prime_UTR	20013664	20013856	.	+	.	Parent=Os09t0514100-01
Chr09	irgsp1_rep	three_prime_UTR	20014002	20014157	.	+	.	Parent=Os09t0514100-01
Chr09	irgsp1_rep	three_prime_UTR	20014295	20014383	.	+	.	Parent=Os09t0514100-01
Chr09	irgsp1_rep	three_prime_UTR	20014668	20014761	.	+	.	Parent=Os09t0514100-01
Chr09	irgsp1_rep	three_prime_UTR	20017212	20017659	.	+	.	Parent=Os09t0514100-01
Chr09	irgsp1_rep	mRNA	20011528	20016295	.	+	.	ID=Os09t0514100-02;Name=Os09t0514100-02;Locus_id=Os09g0514100;Note=FAD dependent oxidoreductase family protein.;Transcript_evidence=AK103415 (DDBJ%2C Best hit);ORF_evidence=NP_001147594.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FAD dependent oxidoreductase (IPR006076);NIAS_FLcDNA=J033128I03;Expression=AK103415;TENOR=Os09t0514100-02;KEGG=Os09t0514100-02
Chr09	irgsp1_rep	five_prime_UTR	20011528	20011601	.	+	.	Parent=Os09t0514100-02
Chr09	irgsp1_rep	CDS	20011602	20011923	.	+	0	Parent=Os09t0514100-02
Chr09	irgsp1_rep	CDS	20012015	20012167	.	+	2	Parent=Os09t0514100-02
Chr09	irgsp1_rep	CDS	20012559	20012773	.	+	2	Parent=Os09t0514100-02
Chr09	irgsp1_rep	CDS	20012851	20012921	.	+	0	Parent=Os09t0514100-02
Chr09	irgsp1_rep	CDS	20013064	20013223	.	+	1	Parent=Os09t0514100-02
Chr09	irgsp1_rep	CDS	20013664	20013856	.	+	0	Parent=Os09t0514100-02
Chr09	irgsp1_rep	CDS	20014002	20014157	.	+	2	Parent=Os09t0514100-02
Chr09	irgsp1_rep	CDS	20014295	20014383	.	+	2	Parent=Os09t0514100-02
Chr09	irgsp1_rep	CDS	20014668	20014761	.	+	0	Parent=Os09t0514100-02
Chr09	irgsp1_rep	CDS	20015931	20015941	.	+	2	Parent=Os09t0514100-02
Chr09	irgsp1_rep	three_prime_UTR	20015942	20016295	.	+	.	Parent=Os09t0514100-02
Chr09	irgsp1_rep	mRNA	20015588	20019391	.	-	.	ID=Os09t0514200-01;Name=Os09t0514200-01;Locus_id=Os09g0514200;CGSNL Gene Symbol=CDPK22;CGSNL Gene Name=CALCIUM-DEPENDENT PROTEIN KINASE 22;Oryzabase Gene Symbol Synonym(s)=OsCDPK22%2C OsCPK22;Oryzabase Gene Name Synonym(s)=calcium-dependent protein kinase;Note=Similar to Calcium-dependent protein kinase.;Transcript_evidence=AK100474 (DDBJ%2C Best hit);ORF_evidence=B3GN93 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Calcium-binding EF-hand (IPR002048),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),EF-hand-like domain (IPR011992),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J023093N16;Oryzabase=8073;Expression=AK100474;TENOR=Os09t0514200-01;KEGG=Os09t0514200-01 (EC:2.7.11.17)
Chr09	irgsp1_rep	five_prime_UTR	20019277	20019391	.	-	.	Parent=Os09t0514200-01
Chr09	irgsp1_rep	CDS	20018608	20019276	.	-	0	Parent=Os09t0514200-01
Chr09	irgsp1_rep	CDS	20018323	20018446	.	-	0	Parent=Os09t0514200-01
Chr09	irgsp1_rep	CDS	20018043	20018186	.	-	2	Parent=Os09t0514200-01
Chr09	irgsp1_rep	CDS	20017750	20017902	.	-	2	Parent=Os09t0514200-01
Chr09	irgsp1_rep	CDS	20017427	20017542	.	-	2	Parent=Os09t0514200-01
Chr09	irgsp1_rep	CDS	20017174	20017341	.	-	0	Parent=Os09t0514200-01
Chr09	irgsp1_rep	CDS	20016648	20016875	.	-	0	Parent=Os09t0514200-01
Chr09	irgsp1_rep	CDS	20015910	20016041	.	-	0	Parent=Os09t0514200-01
Chr09	irgsp1_rep	three_prime_UTR	20015588	20015909	.	-	.	Parent=Os09t0514200-01
Chr09	irgsp1_rep	mRNA	20019602	20023403	.	+	.	ID=Os09t0514300-01;Name=Os09t0514300-01;Locus_id=Os09g0514300;Note=Similar to predicted protein.;Transcript_evidence=AK287431 (DDBJ%2C Best hit);ORF_evidence=Q01IA4 (UniProt);NIAS_FLcDNA=J043011D22;TENOR=Os09t0514300-01;KEGG=Os09t0514300-01
Chr09	irgsp1_rep	five_prime_UTR	20019602	20019793	.	+	.	Parent=Os09t0514300-01
Chr09	irgsp1_rep	five_prime_UTR	20020298	20020300	.	+	.	Parent=Os09t0514300-01
Chr09	irgsp1_rep	CDS	20020301	20020438	.	+	0	Parent=Os09t0514300-01
Chr09	irgsp1_rep	CDS	20020572	20020634	.	+	0	Parent=Os09t0514300-01
Chr09	irgsp1_rep	CDS	20020859	20020925	.	+	0	Parent=Os09t0514300-01
Chr09	irgsp1_rep	CDS	20021010	20021110	.	+	2	Parent=Os09t0514300-01
Chr09	irgsp1_rep	CDS	20021846	20021890	.	+	0	Parent=Os09t0514300-01
Chr09	irgsp1_rep	CDS	20022118	20022524	.	+	0	Parent=Os09t0514300-01
Chr09	irgsp1_rep	CDS	20023038	20023044	.	+	1	Parent=Os09t0514300-01
Chr09	irgsp1_rep	three_prime_UTR	20023045	20023403	.	+	.	Parent=Os09t0514300-01
Chr09	irgsp1_rep	mRNA	20022103	20022613	.	-	.	ID=Os09t0514350-00;Name=Os09t0514350-00;Locus_id=Os09g0514350;Note=Hypothetical protein.;Transcript_evidence=EU949684 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0514350-00
Chr09	irgsp1_rep	five_prime_UTR	20022476	20022613	.	-	.	Parent=Os09t0514350-00
Chr09	irgsp1_rep	CDS	20022242	20022475	.	-	0	Parent=Os09t0514350-00
Chr09	irgsp1_rep	three_prime_UTR	20022103	20022241	.	-	.	Parent=Os09t0514350-00
Chr09	irgsp1_rep	mRNA	20023974	20027104	.	+	.	ID=Os09t0514400-01;Name=Os09t0514400-01;Locus_id=Os09g0514400;Note=Similar to Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit (EC 2.5.1.58) (EC 2.5.1.59) (CAAX farnesyltransferase alpha subunit) (Ras proteins prenyltransferase alpha) (FTase-alpha) (Type I protein geranyl-geranyltransferase alpha subunit) (GGTase-I-alpha).;Transcript_evidence=AK060892 (DDBJ%2C Best hit);ORF_evidence=B6TEY3 (UniProt);GO=Biological Process: protein prenylation (GO:0018342),Molecular Function: protein prenyltransferase activity (GO:0008318);InterPro=Protein prenyltransferase%2C alpha subunit (IPR002088),Protein prenyltransferase (IPR008940);NIAS_FLcDNA=001-035-C02;Expression=AK060892;TENOR=Os09t0514400-01;KEGG=Os09t0514400-01 (EC:2.5.1.58%2C EC:2.5.1.59)
Chr09	irgsp1_rep	five_prime_UTR	20023974	20024100	.	+	.	Parent=Os09t0514400-01
Chr09	irgsp1_rep	five_prime_UTR	20024384	20024396	.	+	.	Parent=Os09t0514400-01
Chr09	irgsp1_rep	CDS	20024397	20024648	.	+	0	Parent=Os09t0514400-01
Chr09	irgsp1_rep	CDS	20025601	20025710	.	+	0	Parent=Os09t0514400-01
Chr09	irgsp1_rep	CDS	20025876	20025996	.	+	1	Parent=Os09t0514400-01
Chr09	irgsp1_rep	CDS	20026146	20026241	.	+	0	Parent=Os09t0514400-01
Chr09	irgsp1_rep	CDS	20026495	20026935	.	+	0	Parent=Os09t0514400-01
Chr09	irgsp1_rep	three_prime_UTR	20026936	20027104	.	+	.	Parent=Os09t0514400-01
Chr09	irgsp1_rep	mRNA	20024013	20027101	.	+	.	ID=Os09t0514400-02;Name=Os09t0514400-02;Locus_id=Os09g0514400;Note=Similar to Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit (EC 2.5.1.58) (EC 2.5.1.59) (CAAX farnesyltransferase alpha subunit) (Ras proteins prenyltransferase alpha) (FTase-alpha) (Type I protein geranyl-geranyltransferase alpha subunit) (GGTase-I-alpha).;Transcript_evidence=AK104483 (DDBJ%2C Best hit),AK098845 (DDBJ%2C Best hit);ORF_evidence=B6TEY3 (UniProt);GO=Biological Process: protein prenylation (GO:0018342),Molecular Function: protein prenyltransferase activity (GO:0008318);InterPro=Protein prenyltransferase%2C alpha subunit (IPR002088),Protein prenyltransferase (IPR008940);NIAS_FLcDNA=006-301-H07,J013000C07;TENOR=Os09t0514400-02
Chr09	irgsp1_rep	five_prime_UTR	20024013	20024100	.	+	.	Parent=Os09t0514400-02
Chr09	irgsp1_rep	five_prime_UTR	20024384	20024396	.	+	.	Parent=Os09t0514400-02
Chr09	irgsp1_rep	CDS	20024397	20024648	.	+	0	Parent=Os09t0514400-02
Chr09	irgsp1_rep	CDS	20025601	20025710	.	+	0	Parent=Os09t0514400-02
Chr09	irgsp1_rep	CDS	20025876	20025996	.	+	1	Parent=Os09t0514400-02
Chr09	irgsp1_rep	CDS	20026146	20026241	.	+	0	Parent=Os09t0514400-02
Chr09	irgsp1_rep	CDS	20026495	20026935	.	+	0	Parent=Os09t0514400-02
Chr09	irgsp1_rep	three_prime_UTR	20026936	20027101	.	+	.	Parent=Os09t0514400-02
Chr09	irgsp1_rep	mRNA	20031961	20037613	.	+	.	ID=Os09t0514500-00;Name=Os09t0514500-00;Locus_id=Os09g0514500;Note=Conserved hypothetical protein.;Transcript_evidence=AB097944 (DDBJ%2C Best hit);ORF_evidence=A3C0L5 (UniProt);Expression=AB097944;TENOR=Os09t0514500-00;KEGG=Os09t0514500-00
Chr09	irgsp1_rep	five_prime_UTR	20031961	20032023	.	+	.	Parent=Os09t0514500-00
Chr09	irgsp1_rep	CDS	20032024	20032173	.	+	0	Parent=Os09t0514500-00
Chr09	irgsp1_rep	CDS	20033045	20033423	.	+	0	Parent=Os09t0514500-00
Chr09	irgsp1_rep	CDS	20035235	20035369	.	+	2	Parent=Os09t0514500-00
Chr09	irgsp1_rep	CDS	20035457	20035536	.	+	2	Parent=Os09t0514500-00
Chr09	irgsp1_rep	CDS	20035720	20035780	.	+	0	Parent=Os09t0514500-00
Chr09	irgsp1_rep	CDS	20035863	20035948	.	+	2	Parent=Os09t0514500-00
Chr09	irgsp1_rep	CDS	20036055	20036124	.	+	0	Parent=Os09t0514500-00
Chr09	irgsp1_rep	CDS	20036479	20036651	.	+	2	Parent=Os09t0514500-00
Chr09	irgsp1_rep	CDS	20036719	20036791	.	+	0	Parent=Os09t0514500-00
Chr09	irgsp1_rep	CDS	20037197	20037354	.	+	2	Parent=Os09t0514500-00
Chr09	irgsp1_rep	three_prime_UTR	20037355	20037613	.	+	.	Parent=Os09t0514500-00
Chr09	irgsp1_rep	mRNA	20033041	20035342	.	-	.	ID=Os09t0514550-00;Name=Os09t0514550-00;Locus_id=Os09g0514550;Note=Hypothetical protein.;Transcript_evidence=tplb0027e15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0514550-00
Chr09	irgsp1_rep	five_prime_UTR	20034957	20035342	.	-	.	Parent=Os09t0514550-00
Chr09	irgsp1_rep	five_prime_UTR	20034757	20034829	.	-	.	Parent=Os09t0514550-00
Chr09	irgsp1_rep	CDS	20034723	20034756	.	-	0	Parent=Os09t0514550-00
Chr09	irgsp1_rep	CDS	20033979	20034132	.	-	2	Parent=Os09t0514550-00
Chr09	irgsp1_rep	CDS	20033074	20033548	.	-	1	Parent=Os09t0514550-00
Chr09	irgsp1_rep	three_prime_UTR	20033041	20033073	.	-	.	Parent=Os09t0514550-00
Chr09	irgsp1_rep	mRNA	20039648	20040374	.	-	.	ID=Os09t0514600-00;Name=Os09t0514600-00;Locus_id=Os09g0514600;Note=Beta-grasp fold%2C ferredoxin-type domain containing protein.;Transcript_evidence=CU861778 (DDBJ%2C Best hit);ORF_evidence=B6SLA5 (UniProt);GO=Molecular Function: electron carrier activity (GO:0009055),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=Ferredoxin (IPR001041),Beta-grasp fold%2C ferredoxin-type (IPR012675);TENOR=Os09t0514600-00;KEGG=Os09t0514600-00
Chr09	irgsp1_rep	five_prime_UTR	20040350	20040374	.	-	.	Parent=Os09t0514600-00
Chr09	irgsp1_rep	CDS	20039873	20040349	.	-	0	Parent=Os09t0514600-00
Chr09	irgsp1_rep	three_prime_UTR	20039648	20039872	.	-	.	Parent=Os09t0514600-00
Chr09	irgsp1_rep	mRNA	20043461	20051864	.	+	.	ID=Os09t0514700-01;Name=Os09t0514700-01;Locus_id=Os09g0514700;Note=Conserved hypothetical protein.;Transcript_evidence=AK106676 (DDBJ%2C Best hit);ORF_evidence=B9G4J7 (UniProt);NIAS_FLcDNA=002-114-A08;Expression=AK106676;TENOR=Os09t0514700-01;KEGG=Os09t0514700-01
Chr09	irgsp1_rep	five_prime_UTR	20043461	20043598	.	+	.	Parent=Os09t0514700-01
Chr09	irgsp1_rep	five_prime_UTR	20044285	20044292	.	+	.	Parent=Os09t0514700-01
Chr09	irgsp1_rep	CDS	20044293	20044427	.	+	0	Parent=Os09t0514700-01
Chr09	irgsp1_rep	CDS	20044545	20044638	.	+	0	Parent=Os09t0514700-01
Chr09	irgsp1_rep	CDS	20044771	20044892	.	+	2	Parent=Os09t0514700-01
Chr09	irgsp1_rep	CDS	20045310	20046548	.	+	0	Parent=Os09t0514700-01
Chr09	irgsp1_rep	CDS	20049915	20049917	.	+	0	Parent=Os09t0514700-01
Chr09	irgsp1_rep	three_prime_UTR	20049918	20050021	.	+	.	Parent=Os09t0514700-01
Chr09	irgsp1_rep	three_prime_UTR	20050458	20050489	.	+	.	Parent=Os09t0514700-01
Chr09	irgsp1_rep	three_prime_UTR	20050568	20050721	.	+	.	Parent=Os09t0514700-01
Chr09	irgsp1_rep	three_prime_UTR	20051534	20051864	.	+	.	Parent=Os09t0514700-01
Chr09	irgsp1_rep	mRNA	20053869	20057671	.	+	.	ID=Os09t0514900-01;Name=Os09t0514900-01;Locus_id=Os09g0514900;Note=Basic helix-loop-helix%2C Nulp1-type domain containing protein.;Transcript_evidence=AK102371 (DDBJ%2C Best hit);ORF_evidence=B8BDI6 (UniProt);InterPro=Basic helix-loop-helix%2C Nulp1-type (IPR006994);NIAS_FLcDNA=J033091L10;Expression=AK102371;TENOR=Os09t0514900-01;KEGG=Os09t0514900-01
Chr09	irgsp1_rep	five_prime_UTR	20053869	20053981	.	+	.	Parent=Os09t0514900-01
Chr09	irgsp1_rep	CDS	20053982	20054164	.	+	0	Parent=Os09t0514900-01
Chr09	irgsp1_rep	CDS	20054840	20055384	.	+	0	Parent=Os09t0514900-01
Chr09	irgsp1_rep	CDS	20055647	20056558	.	+	1	Parent=Os09t0514900-01
Chr09	irgsp1_rep	CDS	20057133	20057394	.	+	1	Parent=Os09t0514900-01
Chr09	irgsp1_rep	three_prime_UTR	20057395	20057671	.	+	.	Parent=Os09t0514900-01
Chr09	irgsp1_rep	mRNA	20059605	20064449	.	+	.	ID=Os09t0515100-01;Name=Os09t0515100-01;Locus_id=Os09g0515100;Note=Similar to bromodomain protein 103.;Transcript_evidence=AK110315 (DDBJ%2C Best hit);ORF_evidence=NP_001105102.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);NIAS_FLcDNA=002-164-C02;TENOR=Os09t0515100-01
Chr09	irgsp1_rep	five_prime_UTR	20059605	20059798	.	+	.	Parent=Os09t0515100-01
Chr09	irgsp1_rep	five_prime_UTR	20060195	20060240	.	+	.	Parent=Os09t0515100-01
Chr09	irgsp1_rep	CDS	20060241	20060450	.	+	0	Parent=Os09t0515100-01
Chr09	irgsp1_rep	CDS	20061532	20061636	.	+	0	Parent=Os09t0515100-01
Chr09	irgsp1_rep	CDS	20061732	20063516	.	+	0	Parent=Os09t0515100-01
Chr09	irgsp1_rep	CDS	20063599	20063787	.	+	0	Parent=Os09t0515100-01
Chr09	irgsp1_rep	CDS	20063882	20064024	.	+	0	Parent=Os09t0515100-01
Chr09	irgsp1_rep	CDS	20064141	20064449	.	+	1	Parent=Os09t0515100-01
Chr09	irgsp1_rep	mRNA	20059613	20066583	.	+	.	ID=Os09t0515100-02;Name=Os09t0515100-02;Locus_id=Os09g0515100;Note=Similar to Cdc48 cell division control protein 48%2C AAA family.;Transcript_evidence=AK099978 (DDBJ%2C Best hit);ORF_evidence=NP_001105102.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=Bromodomain (IPR001487),ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);NIAS_FLcDNA=J013129B19;Expression=AK099978;TENOR=Os09t0515100-02;KEGG=Os09t0515100-02
Chr09	irgsp1_rep	five_prime_UTR	20059613	20059798	.	+	.	Parent=Os09t0515100-02
Chr09	irgsp1_rep	five_prime_UTR	20060195	20060240	.	+	.	Parent=Os09t0515100-02
Chr09	irgsp1_rep	CDS	20060241	20060450	.	+	0	Parent=Os09t0515100-02
Chr09	irgsp1_rep	CDS	20061532	20061636	.	+	0	Parent=Os09t0515100-02
Chr09	irgsp1_rep	CDS	20061732	20063516	.	+	0	Parent=Os09t0515100-02
Chr09	irgsp1_rep	CDS	20063599	20063787	.	+	0	Parent=Os09t0515100-02
Chr09	irgsp1_rep	CDS	20063882	20064024	.	+	0	Parent=Os09t0515100-02
Chr09	irgsp1_rep	CDS	20064141	20064386	.	+	1	Parent=Os09t0515100-02
Chr09	irgsp1_rep	CDS	20065071	20065257	.	+	1	Parent=Os09t0515100-02
Chr09	irgsp1_rep	CDS	20065370	20065435	.	+	0	Parent=Os09t0515100-02
Chr09	irgsp1_rep	CDS	20065532	20065778	.	+	0	Parent=Os09t0515100-02
Chr09	irgsp1_rep	CDS	20065890	20066308	.	+	2	Parent=Os09t0515100-02
Chr09	irgsp1_rep	three_prime_UTR	20066309	20066583	.	+	.	Parent=Os09t0515100-02
Chr09	irgsp1_rep	mRNA	20066961	20069477	.	-	.	ID=Os09t0515200-01;Name=Os09t0515200-01;Locus_id=Os09g0515200;Oryzabase Gene Symbol Synonym(s)=OsPBG1;Oryzabase Gene Name Synonym(s)=20S proteasome beta7 subunit;Note=Beta 7 subunit of 20S proteasome.;Transcript_evidence=AK071380 (DDBJ%2C Best hit),AK103975 (DDBJ%2C Best hit);ORF_evidence=B9G4J9 (UniProt);GO=Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603),Cellular Component: proteasome core complex (GO:0005839),Molecular Function: endopeptidase activity (GO:0004175),Molecular Function: threonine-type endopeptidase activity (GO:0004298);InterPro=Proteasome%2C subunit alpha/beta (IPR001353),Proteasome%2C beta-type subunit%2C conserved site (IPR016050),Proteasome endopeptidase complex%2C beta subunit (IPR016295),Proteasome B-type subunit (IPR023333);NIAS_FLcDNA=J023091G01,001-016-F06;Oryzabase=14505;TENOR=Os09t0515200-01
Chr09	irgsp1_rep	five_prime_UTR	20069375	20069477	.	-	.	Parent=Os09t0515200-01
Chr09	irgsp1_rep	CDS	20069369	20069374	.	-	0	Parent=Os09t0515200-01
Chr09	irgsp1_rep	CDS	20069175	20069260	.	-	0	Parent=Os09t0515200-01
Chr09	irgsp1_rep	CDS	20068126	20068202	.	-	1	Parent=Os09t0515200-01
Chr09	irgsp1_rep	CDS	20067920	20068049	.	-	2	Parent=Os09t0515200-01
Chr09	irgsp1_rep	CDS	20067662	20067833	.	-	1	Parent=Os09t0515200-01
Chr09	irgsp1_rep	CDS	20067388	20067573	.	-	0	Parent=Os09t0515200-01
Chr09	irgsp1_rep	CDS	20067177	20067290	.	-	0	Parent=Os09t0515200-01
Chr09	irgsp1_rep	three_prime_UTR	20066961	20067176	.	-	.	Parent=Os09t0515200-01
Chr09	irgsp1_rep	mRNA	20066961	20069392	.	-	.	ID=Os09t0515200-02;Name=Os09t0515200-02;Locus_id=Os09g0515200;Oryzabase Gene Symbol Synonym(s)=OsPBG1;Oryzabase Gene Name Synonym(s)=20S proteasome beta7 subunit;Note=Beta 7 subunit of 20S proteasome.;Transcript_evidence=AK104212 (DDBJ%2C Best hit);ORF_evidence=B9G4J9 (UniProt);GO=Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603),Cellular Component: proteasome core complex (GO:0005839),Molecular Function: endopeptidase activity (GO:0004175),Molecular Function: threonine-type endopeptidase activity (GO:0004298);InterPro=Proteasome%2C subunit alpha/beta (IPR001353),Proteasome%2C beta-type subunit%2C conserved site (IPR016050),Proteasome endopeptidase complex%2C beta subunit (IPR016295),Proteasome B-type subunit (IPR023333);NIAS_FLcDNA=006-305-D09;Oryzabase=14505;Expression=AK103975;TENOR=Os09t0515200-02;KEGG=Os09t0515200-02 (EC:3.4.25.1);B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	20069375	20069392	.	-	.	Parent=Os09t0515200-02
Chr09	irgsp1_rep	CDS	20069369	20069374	.	-	0	Parent=Os09t0515200-02
Chr09	irgsp1_rep	CDS	20069175	20069260	.	-	0	Parent=Os09t0515200-02
Chr09	irgsp1_rep	CDS	20068126	20068202	.	-	1	Parent=Os09t0515200-02
Chr09	irgsp1_rep	CDS	20067920	20068049	.	-	2	Parent=Os09t0515200-02
Chr09	irgsp1_rep	CDS	20067662	20067833	.	-	1	Parent=Os09t0515200-02
Chr09	irgsp1_rep	CDS	20067388	20067573	.	-	0	Parent=Os09t0515200-02
Chr09	irgsp1_rep	CDS	20067177	20067290	.	-	0	Parent=Os09t0515200-02
Chr09	irgsp1_rep	three_prime_UTR	20066961	20067176	.	-	.	Parent=Os09t0515200-02
Chr09	irgsp1_rep	mRNA	20070639	20073650	.	-	.	ID=Os09t0515300-01;Name=Os09t0515300-01;Locus_id=Os09g0515300;Note=Conserved hypothetical protein.;Transcript_evidence=AK102157 (DDBJ%2C Best hit);ORF_evidence=B9G4K0 (UniProt);NIAS_FLcDNA=J033086F18;Expression=AK102157;TENOR=Os09t0515300-01;KEGG=Os09t0515300-01
Chr09	irgsp1_rep	five_prime_UTR	20073613	20073650	.	-	.	Parent=Os09t0515300-01
Chr09	irgsp1_rep	CDS	20073492	20073612	.	-	0	Parent=Os09t0515300-01
Chr09	irgsp1_rep	CDS	20072965	20073074	.	-	2	Parent=Os09t0515300-01
Chr09	irgsp1_rep	CDS	20072141	20072368	.	-	0	Parent=Os09t0515300-01
Chr09	irgsp1_rep	three_prime_UTR	20071445	20072140	.	-	.	Parent=Os09t0515300-01
Chr09	irgsp1_rep	three_prime_UTR	20070639	20071111	.	-	.	Parent=Os09t0515300-01
Chr09	irgsp1_rep	mRNA	20073815	20076697	.	+	.	ID=Os09t0515400-01;Name=Os09t0515400-01;Locus_id=Os09g0515400;Note=Trigger factor%2C ribosome-binding%2C bacterial domain containing protein.;Transcript_evidence=AK103734 (DDBJ%2C Best hit);ORF_evidence=B9G4K1 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: protein transport (GO:0015031);InterPro=Trigger factor%2C ribosome-binding%2C bacterial (IPR008881);NIAS_FLcDNA=J033138G03;TENOR=Os09t0515400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	20073815	20073839	.	+	.	Parent=Os09t0515400-01
Chr09	irgsp1_rep	CDS	20073840	20073905	.	+	0	Parent=Os09t0515400-01
Chr09	irgsp1_rep	CDS	20074567	20074658	.	+	0	Parent=Os09t0515400-01
Chr09	irgsp1_rep	CDS	20074860	20074909	.	+	1	Parent=Os09t0515400-01
Chr09	irgsp1_rep	CDS	20074994	20075076	.	+	2	Parent=Os09t0515400-01
Chr09	irgsp1_rep	CDS	20075226	20075334	.	+	0	Parent=Os09t0515400-01
Chr09	irgsp1_rep	CDS	20075855	20075868	.	+	2	Parent=Os09t0515400-01
Chr09	irgsp1_rep	CDS	20076018	20076119	.	+	0	Parent=Os09t0515400-01
Chr09	irgsp1_rep	CDS	20076266	20076379	.	+	0	Parent=Os09t0515400-01
Chr09	irgsp1_rep	three_prime_UTR	20076380	20076697	.	+	.	Parent=Os09t0515400-01
Chr09	irgsp1_rep	mRNA	20078193	20082633	.	+	.	ID=Os09t0515500-01;Name=Os09t0515500-01;Locus_id=Os09g0515500;Note=Translation initiation factor 2 related domain containing protein.;Transcript_evidence=AK065778 (DDBJ%2C Best hit);ORF_evidence=D7U9V2 (UniProt);GO=Biological Process: translational initiation (GO:0006413),Cellular Component: intracellular (GO:0005622),Molecular Function: translation initiation factor activity (GO:0003743),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Translation initiation factor aIF-2%2C bacterial-like (IPR000178),Protein synthesis factor%2C GTP-binding (IPR000795),Small GTP-binding protein domain (IPR005225),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Translation initiation factor IF- 2 (IPR015760),Translation initiation factor IF- 2%2C domain 3 (IPR023115);NIAS_FLcDNA=J013036C01;Expression=AK065778;TENOR=Os09t0515500-01;KEGG=Os09t0515500-01
Chr09	irgsp1_rep	five_prime_UTR	20078193	20078411	.	+	.	Parent=Os09t0515500-01
Chr09	irgsp1_rep	CDS	20078412	20078438	.	+	0	Parent=Os09t0515500-01
Chr09	irgsp1_rep	CDS	20078614	20078704	.	+	0	Parent=Os09t0515500-01
Chr09	irgsp1_rep	CDS	20079039	20079117	.	+	2	Parent=Os09t0515500-01
Chr09	irgsp1_rep	CDS	20079476	20079809	.	+	1	Parent=Os09t0515500-01
Chr09	irgsp1_rep	CDS	20080000	20081034	.	+	0	Parent=Os09t0515500-01
Chr09	irgsp1_rep	CDS	20081207	20081356	.	+	0	Parent=Os09t0515500-01
Chr09	irgsp1_rep	CDS	20081847	20082281	.	+	0	Parent=Os09t0515500-01
Chr09	irgsp1_rep	three_prime_UTR	20082282	20082633	.	+	.	Parent=Os09t0515500-01
Chr09	irgsp1_rep	mRNA	20083070	20083372	.	-	.	ID=Os09t0515550-00;Name=Os09t0515550-00;Locus_id=Os09g0515550;Note=Hypothetical protein.;Transcript_evidence=EU971718 (DDBJ);ORF_evidence=GeneMark;TENOR=Os09t0515550-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	20083091	20083372	.	-	0	Parent=Os09t0515550-00
Chr09	irgsp1_rep	three_prime_UTR	20083070	20083090	.	-	.	Parent=Os09t0515550-00
Chr09	irgsp1_rep	mRNA	20086629	20090571	.	-	.	ID=Os09t0515800-01;Name=Os09t0515800-01;Locus_id=Os09g0515800;Oryzabase Gene Symbol Synonym(s)=TBC22A%2C TBC;Oryzabase Gene Name Synonym(s)=TBC1 domain family member 22A;Note=RabGAP/TBC domain containing protein.;Transcript_evidence=AK070794 (DDBJ%2C Best hit),AK066076 (DDBJ%2C Best hit);ORF_evidence=NP_001152412.1 (RefSeq);GO=Biological Process: regulation of Rab GTPase activity (GO:0032313),Cellular Component: intracellular (GO:0005622),Molecular Function: Rab GTPase activator activity (GO:0005097);InterPro=Rab-GAP/TBC domain (IPR000195);NIAS_FLcDNA=J023064K04,J013050J18;Oryzabase=21966;Expression=AK070794;TENOR=Os09t0515800-01;KEGG=Os09t0515800-01
Chr09	irgsp1_rep	five_prime_UTR	20090142	20090571	.	-	.	Parent=Os09t0515800-01
Chr09	irgsp1_rep	CDS	20090047	20090141	.	-	0	Parent=Os09t0515800-01
Chr09	irgsp1_rep	CDS	20089533	20089665	.	-	1	Parent=Os09t0515800-01
Chr09	irgsp1_rep	CDS	20089272	20089455	.	-	0	Parent=Os09t0515800-01
Chr09	irgsp1_rep	CDS	20088895	20088965	.	-	2	Parent=Os09t0515800-01
Chr09	irgsp1_rep	CDS	20088681	20088818	.	-	0	Parent=Os09t0515800-01
Chr09	irgsp1_rep	CDS	20088496	20088587	.	-	0	Parent=Os09t0515800-01
Chr09	irgsp1_rep	CDS	20087721	20087992	.	-	1	Parent=Os09t0515800-01
Chr09	irgsp1_rep	CDS	20087312	20087397	.	-	2	Parent=Os09t0515800-01
Chr09	irgsp1_rep	CDS	20087138	20087239	.	-	0	Parent=Os09t0515800-01
Chr09	irgsp1_rep	CDS	20086811	20086972	.	-	0	Parent=Os09t0515800-01
Chr09	irgsp1_rep	three_prime_UTR	20086629	20086810	.	-	.	Parent=Os09t0515800-01
Chr09	irgsp1_rep	mRNA	20094196	20098433	.	-	.	ID=Os09t0516200-01;Name=Os09t0516200-01;Locus_id=Os09g0516200;CGSNL Gene Symbol=RF2A;CGSNL Gene Name=bZIP TRANSCRIPTION FACTOR RF2A;Oryzabase Gene Symbol Synonym(s)=RF2a%2C OsbZIP75;Oryzabase Gene Name Synonym(s)=Transcription factor RF2a%2C bZIP transcription factor 75;Note=Similar to Transcription factor RF2a.;Transcript_evidence=AK102795 (DDBJ%2C Best hit);ORF_evidence=Q69IL4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);NIAS_FLcDNA=J033108B13;Oryzabase=8245;Expression=AK102795;TENOR=Os09t0516200-01;KEGG=Os09t0516200-01
Chr09	irgsp1_rep	five_prime_UTR	20098290	20098433	.	-	.	Parent=Os09t0516200-01
Chr09	irgsp1_rep	CDS	20097730	20098289	.	-	0	Parent=Os09t0516200-01
Chr09	irgsp1_rep	CDS	20097153	20097285	.	-	1	Parent=Os09t0516200-01
Chr09	irgsp1_rep	CDS	20095518	20095602	.	-	0	Parent=Os09t0516200-01
Chr09	irgsp1_rep	CDS	20094714	20095078	.	-	2	Parent=Os09t0516200-01
Chr09	irgsp1_rep	three_prime_UTR	20094196	20094713	.	-	.	Parent=Os09t0516200-01
Chr09	irgsp1_rep	mRNA	20094408	20098643	.	-	.	ID=Os09t0516200-02;Name=Os09t0516200-02;Locus_id=Os09g0516200;RAP-DB Gene Symbol Synonym(s)=RF2A%2C RF2a%2C OsbZIP75;RAP-DB Gene Name Synonym(s)=bZIP TRANSCRIPTION FACTOR RF2A%2C Rice bZIP transcription factor RF2a%2C Transcription factor RF2a%2C bZIP transcription factor 75;CGSNL Gene Symbol=RF2A;CGSNL Gene Name=bZIP TRANSCRIPTION FACTOR RF2A;Oryzabase Gene Symbol Synonym(s)=RF2a%2C OsbZIP75;Oryzabase Gene Name Synonym(s)=Transcription factor RF2a%2C bZIP transcription factor 75;Note=bZIP DNA-binding protein%2C Disease resistance%2C Vascular development;Transcript_evidence=AF005492 (Genbank);ORF_evidence=Q69IL4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper domain (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);Manual Curation=May 29%2C 2009;Literature_PMID=9311985,19104064;Oryzabase=8245
Chr09	irgsp1_rep	five_prime_UTR	20098290	20098643	.	-	.	Parent=Os09t0516200-02
Chr09	irgsp1_rep	CDS	20097953	20098289	.	-	0	Parent=Os09t0516200-02
Chr09	irgsp1_rep	CDS	20097730	20097916	.	-	2	Parent=Os09t0516200-02
Chr09	irgsp1_rep	CDS	20097153	20097285	.	-	1	Parent=Os09t0516200-02
Chr09	irgsp1_rep	CDS	20095518	20095602	.	-	0	Parent=Os09t0516200-02
Chr09	irgsp1_rep	CDS	20094714	20095078	.	-	2	Parent=Os09t0516200-02
Chr09	irgsp1_rep	three_prime_UTR	20094408	20094713	.	-	.	Parent=Os09t0516200-02
Chr09	irgsp1_rep	mRNA	20109768	20114569	.	-	.	ID=Os09t0516300-01;Name=Os09t0516300-01;Locus_id=Os09g0516300;RAP-DB Gene Symbol Synonym(s)=OsRRMh;RAP-DB Gene Name Synonym(s)=OsRRM homologue;Oryzabase Gene Symbol Synonym(s)=OsRRMh%2C RRMh;Oryzabase Gene Name Synonym(s)=OsRRM homologue;Note=Spen (Split ends)-like protein%2C Vegetative to reproductive transition;Transcript_evidence=AK065222,HE995412 (Zhonghua 11);ORF_evidence=Q69IL3,K8DVL5 (Zhonghua 11);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=Nucleotide-binding alpha-beta plait domain (IPR012677),RNA recognition motif domain (IPR000504),Spen paralogue and orthologue SPOC%2C C-terminal (IPR012921);NIAS_FLcDNA=J013002G20;Manual Curation=February 9%2C 2017;Literature_PMID=23621499;Oryzabase=12352;Expression=AK065222;TENOR=Os09t0516300-01;KEGG=Os09t0516300-01
Chr09	irgsp1_rep	five_prime_UTR	20114458	20114569	.	-	.	Parent=Os09t0516300-01
Chr09	irgsp1_rep	CDS	20114101	20114457	.	-	0	Parent=Os09t0516300-01
Chr09	irgsp1_rep	CDS	20113025	20113267	.	-	0	Parent=Os09t0516300-01
Chr09	irgsp1_rep	CDS	20112874	20112921	.	-	0	Parent=Os09t0516300-01
Chr09	irgsp1_rep	CDS	20112022	20112773	.	-	0	Parent=Os09t0516300-01
Chr09	irgsp1_rep	CDS	20110848	20111934	.	-	1	Parent=Os09t0516300-01
Chr09	irgsp1_rep	CDS	20110493	20110708	.	-	0	Parent=Os09t0516300-01
Chr09	irgsp1_rep	three_prime_UTR	20109768	20110492	.	-	.	Parent=Os09t0516300-01
Chr09	irgsp1_rep	mRNA	20117520	20121695	.	+	.	ID=Os09t0516451-01;Name=Os09t0516451-01;Locus_id=Os09g0516451;Note=Hypothetical gene.;Transcript_evidence=AK287468 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J043021L03;TENOR=Os09t0516451-01;KEGG=Os09t0516451-01
Chr09	irgsp1_rep	five_prime_UTR	20117520	20117761	.	+	.	Parent=Os09t0516451-01
Chr09	irgsp1_rep	five_prime_UTR	20117841	20118039	.	+	.	Parent=Os09t0516451-01
Chr09	irgsp1_rep	five_prime_UTR	20118135	20118201	.	+	.	Parent=Os09t0516451-01
Chr09	irgsp1_rep	five_prime_UTR	20118732	20118888	.	+	.	Parent=Os09t0516451-01
Chr09	irgsp1_rep	five_prime_UTR	20119069	20119243	.	+	.	Parent=Os09t0516451-01
Chr09	irgsp1_rep	five_prime_UTR	20119430	20119547	.	+	.	Parent=Os09t0516451-01
Chr09	irgsp1_rep	five_prime_UTR	20119742	20119940	.	+	.	Parent=Os09t0516451-01
Chr09	irgsp1_rep	five_prime_UTR	20120049	20120128	.	+	.	Parent=Os09t0516451-01
Chr09	irgsp1_rep	five_prime_UTR	20120207	20120263	.	+	.	Parent=Os09t0516451-01
Chr09	irgsp1_rep	CDS	20120264	20120323	.	+	0	Parent=Os09t0516451-01
Chr09	irgsp1_rep	CDS	20120857	20121027	.	+	0	Parent=Os09t0516451-01
Chr09	irgsp1_rep	three_prime_UTR	20121187	20121695	.	+	.	Parent=Os09t0516451-01
Chr09	irgsp1_rep	mRNA	20117748	20121699	.	-	.	ID=Os09t0516500-00;Name=Os09t0516500-00;Locus_id=Os09g0516500;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=EU969024 (DDBJ);ORF_evidence=Q69IL0 (UniProt);GO=Biological Process: steroid biosynthetic process (GO:0006694),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: endoplasmic reticulum (GO:0005783),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: 3-beta-hydroxy-delta5-steroid dehydrogenase activity (GO:0003854),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616);InterPro=3-beta hydroxysteroid dehydrogenase/isomerase (IPR002225),Reticulon (IPR003388),NAD(P)-binding domain (IPR016040);TENOR=Os09t0516500-00;KEGG=Os09t0516500-00
Chr09	irgsp1_rep	five_prime_UTR	20121664	20121699	.	-	.	Parent=Os09t0516500-00
Chr09	irgsp1_rep	CDS	20121187	20121663	.	-	0	Parent=Os09t0516500-00
Chr09	irgsp1_rep	CDS	20120857	20121027	.	-	0	Parent=Os09t0516500-00
Chr09	irgsp1_rep	CDS	20120207	20120323	.	-	0	Parent=Os09t0516500-00
Chr09	irgsp1_rep	CDS	20120049	20120128	.	-	0	Parent=Os09t0516500-00
Chr09	irgsp1_rep	CDS	20119742	20119940	.	-	1	Parent=Os09t0516500-00
Chr09	irgsp1_rep	CDS	20119430	20119547	.	-	0	Parent=Os09t0516500-00
Chr09	irgsp1_rep	CDS	20119069	20119243	.	-	2	Parent=Os09t0516500-00
Chr09	irgsp1_rep	CDS	20118732	20118888	.	-	1	Parent=Os09t0516500-00
Chr09	irgsp1_rep	CDS	20118135	20118201	.	-	0	Parent=Os09t0516500-00
Chr09	irgsp1_rep	CDS	20117888	20118039	.	-	2	Parent=Os09t0516500-00
Chr09	irgsp1_rep	three_prime_UTR	20117748	20117887	.	-	.	Parent=Os09t0516500-00
Chr09	irgsp1_rep	mRNA	20122454	20127415	.	-	.	ID=Os09t0516600-01;Name=Os09t0516600-01;Locus_id=Os09g0516600;CGSNL Gene Symbol=GLYII-3;CGSNL Gene Name=GLYOXALASE II-3;Oryzabase Gene Symbol Synonym(s)=OsGLYII3%2C GLYII3%2C gly II%2C OsGLYII-3;Oryzabase Gene Name Synonym(s)=glyoxalase II-3%2C glyoxalase II;Note=Glyoxalase II.;Transcript_evidence=AK070780 (DDBJ%2C Best hit);ORF_evidence=Q940L0 (UniProt);GO=Molecular Function: hydroxyacylglutathione hydrolase activity (GO:0004416),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: hydrolase activity (GO:0016787);InterPro=Beta-lactamase-like (IPR001279),Hydroxyacylglutathione hydrolase (IPR017782);NIAS_FLcDNA=J023063J20;Oryzabase=9364;Expression=AK070780;TENOR=Os09t0516600-01;KEGG=Os09t0516600-01 (EC:3.1.2.6)
Chr09	irgsp1_rep	five_prime_UTR	20127239	20127415	.	-	.	Parent=Os09t0516600-01
Chr09	irgsp1_rep	CDS	20127164	20127238	.	-	0	Parent=Os09t0516600-01
Chr09	irgsp1_rep	CDS	20126571	20126756	.	-	0	Parent=Os09t0516600-01
Chr09	irgsp1_rep	CDS	20125581	20125784	.	-	0	Parent=Os09t0516600-01
Chr09	irgsp1_rep	CDS	20125099	20125222	.	-	0	Parent=Os09t0516600-01
Chr09	irgsp1_rep	CDS	20124557	20124657	.	-	2	Parent=Os09t0516600-01
Chr09	irgsp1_rep	CDS	20123884	20123958	.	-	0	Parent=Os09t0516600-01
Chr09	irgsp1_rep	CDS	20123704	20123802	.	-	0	Parent=Os09t0516600-01
Chr09	irgsp1_rep	CDS	20122828	20122974	.	-	0	Parent=Os09t0516600-01
Chr09	irgsp1_rep	three_prime_UTR	20122454	20122827	.	-	.	Parent=Os09t0516600-01
Chr09	irgsp1_rep	mRNA	20122516	20127336	.	-	.	ID=Os09t0516600-02;Name=Os09t0516600-02;Locus_id=Os09g0516600;CGSNL Gene Symbol=GLYII-3;CGSNL Gene Name=GLYOXALASE II-3;Oryzabase Gene Symbol Synonym(s)=OsGLYII3%2C GLYII3%2C gly II%2C OsGLYII-3;Oryzabase Gene Name Synonym(s)=glyoxalase II-3%2C glyoxalase II;Note=Glyoxalase II.;Transcript_evidence=AK103563 (DDBJ%2C Best hit);ORF_evidence=Q940L0 (UniProt);GO=Molecular Function: hydroxyacylglutathione hydrolase activity (GO:0004416),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: hydrolase activity (GO:0016787);InterPro=Beta-lactamase-like (IPR001279),Hydroxyacylglutathione hydrolase (IPR017782);NIAS_FLcDNA=J033132K06;Oryzabase=9364;Expression=AK103563;TENOR=Os09t0516600-02;KEGG=Os09t0516600-02 (EC:3.1.2.6)
Chr09	irgsp1_rep	five_prime_UTR	20127239	20127336	.	-	.	Parent=Os09t0516600-02
Chr09	irgsp1_rep	CDS	20127164	20127238	.	-	0	Parent=Os09t0516600-02
Chr09	irgsp1_rep	CDS	20126571	20126756	.	-	0	Parent=Os09t0516600-02
Chr09	irgsp1_rep	CDS	20125581	20125784	.	-	0	Parent=Os09t0516600-02
Chr09	irgsp1_rep	CDS	20125099	20125222	.	-	0	Parent=Os09t0516600-02
Chr09	irgsp1_rep	CDS	20124557	20124657	.	-	2	Parent=Os09t0516600-02
Chr09	irgsp1_rep	CDS	20123884	20123958	.	-	0	Parent=Os09t0516600-02
Chr09	irgsp1_rep	CDS	20123704	20123802	.	-	0	Parent=Os09t0516600-02
Chr09	irgsp1_rep	CDS	20122828	20122974	.	-	0	Parent=Os09t0516600-02
Chr09	irgsp1_rep	three_prime_UTR	20122516	20122827	.	-	.	Parent=Os09t0516600-02
Chr09	irgsp1_rep	mRNA	20128201	20134358	.	-	.	ID=Os09t0516700-01;Name=Os09t0516700-01;Locus_id=Os09g0516700;Note=Protein of unknown function DUF936%2C plant family protein.;Transcript_evidence=AK072458 (DDBJ%2C Best hit);ORF_evidence=B9G4K5 (UniProt);InterPro=Protein of unknown function DUF936%2C plant (IPR010341);NIAS_FLcDNA=J023121E21;Expression=AK072458;TENOR=Os09t0516700-01;KEGG=Os09t0516700-01
Chr09	irgsp1_rep	five_prime_UTR	20133928	20134358	.	-	.	Parent=Os09t0516700-01
Chr09	irgsp1_rep	five_prime_UTR	20132845	20132879	.	-	.	Parent=Os09t0516700-01
Chr09	irgsp1_rep	CDS	20131861	20132844	.	-	0	Parent=Os09t0516700-01
Chr09	irgsp1_rep	CDS	20131337	20131606	.	-	0	Parent=Os09t0516700-01
Chr09	irgsp1_rep	CDS	20130866	20131003	.	-	0	Parent=Os09t0516700-01
Chr09	irgsp1_rep	three_prime_UTR	20128201	20130865	.	-	.	Parent=Os09t0516700-01
Chr09	irgsp1_rep	mRNA	20128246	20132868	.	+	.	ID=Os09t0516750-00;Name=Os09t0516750-00;Locus_id=Os09g0516750;Note=Hypothetical protein.;Transcript_evidence=tplb0057h05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0516750-00
Chr09	irgsp1_rep	five_prime_UTR	20128246	20128699	.	+	.	Parent=Os09t0516750-00
Chr09	irgsp1_rep	CDS	20128700	20129146	.	+	0	Parent=Os09t0516750-00
Chr09	irgsp1_rep	CDS	20129309	20129454	.	+	0	Parent=Os09t0516750-00
Chr09	irgsp1_rep	CDS	20130908	20130953	.	+	1	Parent=Os09t0516750-00
Chr09	irgsp1_rep	three_prime_UTR	20130954	20131005	.	+	.	Parent=Os09t0516750-00
Chr09	irgsp1_rep	three_prime_UTR	20131331	20131604	.	+	.	Parent=Os09t0516750-00
Chr09	irgsp1_rep	three_prime_UTR	20131865	20132868	.	+	.	Parent=Os09t0516750-00
Chr09	irgsp1_rep	mRNA	20145624	20146472	.	+	.	ID=Os09t0516800-01;Name=Os09t0516800-01;Locus_id=Os09g0516800;Note=Protein of unknown function DUF3128 domain containing protein.;Transcript_evidence=AK287963 (DDBJ%2C Best hit);ORF_evidence=NP_001063675.1 (RefSeq);InterPro=Protein of unknown function DUF3128 (IPR021475);NIAS_FLcDNA=J075065I24;TENOR=Os09t0516800-01;KEGG=Os09t0516800-01
Chr09	irgsp1_rep	five_prime_UTR	20145624	20145703	.	+	.	Parent=Os09t0516800-01
Chr09	irgsp1_rep	five_prime_UTR	20145789	20145810	.	+	.	Parent=Os09t0516800-01
Chr09	irgsp1_rep	CDS	20145811	20146320	.	+	0	Parent=Os09t0516800-01
Chr09	irgsp1_rep	three_prime_UTR	20146321	20146472	.	+	.	Parent=Os09t0516800-01
Chr09	irgsp1_rep	mRNA	20147198	20154206	.	-	.	ID=Os09t0516900-01;Name=Os09t0516900-01;Locus_id=Os09g0516900;Note=C2 calcium-dependent membrane targeting domain containing protein.;Transcript_evidence=AK067607 (DDBJ%2C Best hit);ORF_evidence=B4FWB9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),GRAM (IPR004182),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=J013112L10;Expression=AK067607;TENOR=Os09t0516900-01;KEGG=Os09t0516900-01
Chr09	irgsp1_rep	five_prime_UTR	20154111	20154206	.	-	.	Parent=Os09t0516900-01
Chr09	irgsp1_rep	CDS	20153877	20154110	.	-	0	Parent=Os09t0516900-01
Chr09	irgsp1_rep	CDS	20153696	20153737	.	-	0	Parent=Os09t0516900-01
Chr09	irgsp1_rep	CDS	20153512	20153609	.	-	0	Parent=Os09t0516900-01
Chr09	irgsp1_rep	CDS	20152843	20152918	.	-	1	Parent=Os09t0516900-01
Chr09	irgsp1_rep	CDS	20152338	20152466	.	-	0	Parent=Os09t0516900-01
Chr09	irgsp1_rep	CDS	20152209	20152255	.	-	0	Parent=Os09t0516900-01
Chr09	irgsp1_rep	CDS	20151771	20151894	.	-	1	Parent=Os09t0516900-01
Chr09	irgsp1_rep	CDS	20151558	20151674	.	-	0	Parent=Os09t0516900-01
Chr09	irgsp1_rep	CDS	20150870	20150899	.	-	0	Parent=Os09t0516900-01
Chr09	irgsp1_rep	CDS	20150679	20150778	.	-	0	Parent=Os09t0516900-01
Chr09	irgsp1_rep	CDS	20150053	20150159	.	-	2	Parent=Os09t0516900-01
Chr09	irgsp1_rep	CDS	20149717	20149860	.	-	0	Parent=Os09t0516900-01
Chr09	irgsp1_rep	CDS	20149526	20149630	.	-	0	Parent=Os09t0516900-01
Chr09	irgsp1_rep	CDS	20148810	20148956	.	-	0	Parent=Os09t0516900-01
Chr09	irgsp1_rep	CDS	20148627	20148680	.	-	0	Parent=Os09t0516900-01
Chr09	irgsp1_rep	CDS	20148418	20148481	.	-	0	Parent=Os09t0516900-01
Chr09	irgsp1_rep	CDS	20148251	20148312	.	-	2	Parent=Os09t0516900-01
Chr09	irgsp1_rep	CDS	20147405	20147563	.	-	0	Parent=Os09t0516900-01
Chr09	irgsp1_rep	three_prime_UTR	20147198	20147404	.	-	.	Parent=Os09t0516900-01
Chr09	irgsp1_rep	mRNA	20147198	20151866	.	-	.	ID=Os09t0516900-02;Name=Os09t0516900-02;Locus_id=Os09g0516900;Note=Similar to GRAM domain containing protein.;Transcript_evidence=AK058746 (DDBJ%2C Best hit);ORF_evidence=B4FWB9 (UniProt);InterPro=GRAM (IPR004182);NIAS_FLcDNA=001-019-H03;Expression=AK058746;TENOR=Os09t0516900-02;KEGG=Os09t0516900-02
Chr09	irgsp1_rep	CDS	20151771	20151866	.	-	0	Parent=Os09t0516900-02
Chr09	irgsp1_rep	CDS	20151558	20151674	.	-	0	Parent=Os09t0516900-02
Chr09	irgsp1_rep	CDS	20150870	20150899	.	-	0	Parent=Os09t0516900-02
Chr09	irgsp1_rep	CDS	20150679	20150778	.	-	0	Parent=Os09t0516900-02
Chr09	irgsp1_rep	CDS	20150053	20150159	.	-	2	Parent=Os09t0516900-02
Chr09	irgsp1_rep	CDS	20149717	20149860	.	-	0	Parent=Os09t0516900-02
Chr09	irgsp1_rep	CDS	20149526	20149630	.	-	0	Parent=Os09t0516900-02
Chr09	irgsp1_rep	CDS	20148810	20148956	.	-	0	Parent=Os09t0516900-02
Chr09	irgsp1_rep	CDS	20148627	20148680	.	-	0	Parent=Os09t0516900-02
Chr09	irgsp1_rep	CDS	20148418	20148481	.	-	0	Parent=Os09t0516900-02
Chr09	irgsp1_rep	CDS	20148251	20148312	.	-	2	Parent=Os09t0516900-02
Chr09	irgsp1_rep	CDS	20147405	20147563	.	-	0	Parent=Os09t0516900-02
Chr09	irgsp1_rep	three_prime_UTR	20147198	20147404	.	-	.	Parent=Os09t0516900-02
Chr09	irgsp1_rep	mRNA	20156455	20157191	.	+	.	ID=Os09t0517000-01;Name=Os09t0517000-01;Locus_id=Os09g0517000;Note=Conserved hypothetical protein.;Transcript_evidence=AK067677 (DDBJ%2C Best hit);ORF_evidence=B8BDJ6 (UniProt);NIAS_FLcDNA=J013116I04;Expression=AK067677;TENOR=Os09t0517000-01;KEGG=Os09t0517000-01
Chr09	irgsp1_rep	five_prime_UTR	20156455	20156492	.	+	.	Parent=Os09t0517000-01
Chr09	irgsp1_rep	CDS	20156493	20156608	.	+	0	Parent=Os09t0517000-01
Chr09	irgsp1_rep	CDS	20156708	20156954	.	+	1	Parent=Os09t0517000-01
Chr09	irgsp1_rep	three_prime_UTR	20156955	20157191	.	+	.	Parent=Os09t0517000-01
Chr09	irgsp1_rep	mRNA	20157733	20162008	.	-	.	ID=Os09t0517100-01;Name=Os09t0517100-01;Locus_id=Os09g0517100;Note=NB-ARC domain containing protein.;Transcript_evidence=AK119460 (DDBJ%2C Best hit);ORF_evidence=Q2QWD6 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=001-133-E09;Expression=AK119460;TENOR=Os09t0517100-01;KEGG=Os09t0517100-01
Chr09	irgsp1_rep	five_prime_UTR	20160941	20162008	.	-	.	Parent=Os09t0517100-01
Chr09	irgsp1_rep	five_prime_UTR	20159984	20160291	.	-	.	Parent=Os09t0517100-01
Chr09	irgsp1_rep	CDS	20159951	20159983	.	-	0	Parent=Os09t0517100-01
Chr09	irgsp1_rep	CDS	20158822	20159811	.	-	0	Parent=Os09t0517100-01
Chr09	irgsp1_rep	CDS	20158701	20158715	.	-	0	Parent=Os09t0517100-01
Chr09	irgsp1_rep	three_prime_UTR	20157733	20158700	.	-	.	Parent=Os09t0517100-01
Chr09	irgsp1_rep	mRNA	20157884	20162003	.	-	.	ID=Os09t0517100-02;Name=Os09t0517100-02;Locus_id=Os09g0517100;Note=Hypothetical conserved gene.;Transcript_evidence=AK100778 (DDBJ%2C Best hit);ORF_evidence=Q2QWD6 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J023120F15;Expression=AK100778;TENOR=Os09t0517100-02;KEGG=Os09t0517100-02
Chr09	irgsp1_rep	five_prime_UTR	20161979	20162003	.	-	.	Parent=Os09t0517100-02
Chr09	irgsp1_rep	CDS	20160875	20161978	.	-	0	Parent=Os09t0517100-02
Chr09	irgsp1_rep	three_prime_UTR	20157884	20160874	.	-	.	Parent=Os09t0517100-02
Chr09	irgsp1_rep	mRNA	20163094	20167803	.	-	.	ID=Os09t0517200-00;Name=Os09t0517200-00;Locus_id=Os09g0517200;Note=Hypothetical conserved gene.;Transcript_evidence=AK335092 (DDBJ);ORF_evidence=Q2QWD6 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os09t0517200-00;KEGG=Os09t0517200-00
Chr09	irgsp1_rep	five_prime_UTR	20167777	20167803	.	-	.	Parent=Os09t0517200-00
Chr09	irgsp1_rep	CDS	20166730	20167776	.	-	0	Parent=Os09t0517200-00
Chr09	irgsp1_rep	CDS	20163094	20164938	.	-	0	Parent=Os09t0517200-00
Chr09	irgsp1_rep	mRNA	20179714	20183008	.	+	.	ID=Os09t0517600-01;Name=Os09t0517600-01;Locus_id=Os09g0517600;RAP-DB Gene Symbol Synonym(s)=OsFH15;Oryzabase Gene Symbol Synonym(s)=OsFH15%2C FH15;Oryzabase Gene Name Synonym(s)=formin homology 15%2C forming family protein 15%2C FH2 protein 15%2C FH2 domain protein 15;Note=Class I formin protein%2C Regulation of grain size%2C Control of microtubule and actin filament cytoskeleton systems;Transcript_evidence=AK101828;ORF_evidence=Q69MT2;InterPro=Formin%2C FH2 domain superfamily (IPR042201),Formin%2C FH2 domain (IPR015425);NIAS_FLcDNA=J033068F13;Manual Curation=April 3%2C 2018;Literature_PMID=28747699;Oryzabase=21774;Expression=AK101828;TENOR=Os09t0517600-01;KEGG=Os09t0517600-01
Chr09	irgsp1_rep	five_prime_UTR	20179714	20179933	.	+	.	Parent=Os09t0517600-01
Chr09	irgsp1_rep	CDS	20179934	20181066	.	+	0	Parent=Os09t0517600-01
Chr09	irgsp1_rep	CDS	20181176	20181375	.	+	1	Parent=Os09t0517600-01
Chr09	irgsp1_rep	CDS	20181488	20181732	.	+	2	Parent=Os09t0517600-01
Chr09	irgsp1_rep	CDS	20181946	20182734	.	+	0	Parent=Os09t0517600-01
Chr09	irgsp1_rep	three_prime_UTR	20182735	20183008	.	+	.	Parent=Os09t0517600-01
Chr09	irgsp1_rep	mRNA	20183338	20186272	.	-	.	ID=Os09t0517700-01;Name=Os09t0517700-01;Locus_id=Os09g0517700;Note=Thioesterase superfamily domain containing protein.;Transcript_evidence=AK071305 (DDBJ%2C Best hit),AK101141 (DDBJ%2C Best hit);ORF_evidence=NP_001078736.1 (RefSeq);InterPro=Thioesterase superfamily (IPR006683);NIAS_FLcDNA=J023088I03,J033026M15;TENOR=Os09t0517700-01
Chr09	irgsp1_rep	five_prime_UTR	20186260	20186272	.	-	.	Parent=Os09t0517700-01
Chr09	irgsp1_rep	CDS	20185690	20186259	.	-	0	Parent=Os09t0517700-01
Chr09	irgsp1_rep	CDS	20184732	20184909	.	-	0	Parent=Os09t0517700-01
Chr09	irgsp1_rep	CDS	20184127	20184614	.	-	2	Parent=Os09t0517700-01
Chr09	irgsp1_rep	CDS	20183805	20183933	.	-	0	Parent=Os09t0517700-01
Chr09	irgsp1_rep	CDS	20183545	20183688	.	-	0	Parent=Os09t0517700-01
Chr09	irgsp1_rep	three_prime_UTR	20183338	20183544	.	-	.	Parent=Os09t0517700-01
Chr09	irgsp1_rep	mRNA	20186494	20190101	.	+	.	ID=Os09t0517800-01;Name=Os09t0517800-01;Locus_id=Os09g0517800;Oryzabase Gene Symbol Synonym(s)=OsFbox499%2C Os_F0020;Oryzabase Gene Name Synonym(s)=F-box protein 499;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK121391 (DDBJ%2C Best hit);ORF_evidence=B9G4K9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated domain%2C type 3 (IPR013187),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023129D04;Oryzabase=17269;Expression=AK121391;TENOR=Os09t0517800-01;KEGG=Os09t0517800-01
Chr09	irgsp1_rep	five_prime_UTR	20186494	20186568	.	+	.	Parent=Os09t0517800-01
Chr09	irgsp1_rep	five_prime_UTR	20187111	20187155	.	+	.	Parent=Os09t0517800-01
Chr09	irgsp1_rep	CDS	20187156	20188382	.	+	0	Parent=Os09t0517800-01
Chr09	irgsp1_rep	three_prime_UTR	20188383	20188465	.	+	.	Parent=Os09t0517800-01
Chr09	irgsp1_rep	three_prime_UTR	20188537	20188668	.	+	.	Parent=Os09t0517800-01
Chr09	irgsp1_rep	three_prime_UTR	20189058	20189149	.	+	.	Parent=Os09t0517800-01
Chr09	irgsp1_rep	three_prime_UTR	20189234	20189281	.	+	.	Parent=Os09t0517800-01
Chr09	irgsp1_rep	three_prime_UTR	20189763	20190101	.	+	.	Parent=Os09t0517800-01
Chr09	irgsp1_rep	mRNA	20187146	20188470	.	-	.	ID=Os09t0517825-00;Name=Os09t0517825-00;Locus_id=Os09g0517825;Note=Hypothetical protein.;Transcript_evidence=tplb0058c05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0517825-00
Chr09	irgsp1_rep	five_prime_UTR	20187428	20188470	.	-	.	Parent=Os09t0517825-00
Chr09	irgsp1_rep	CDS	20187146	20187427	.	-	0	Parent=Os09t0517825-00
Chr09	irgsp1_rep	mRNA	20196707	20203865	.	+	.	ID=Os09t0517900-01;Name=Os09t0517900-01;Locus_id=Os09g0517900;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK065112 (DDBJ%2C Best hit);ORF_evidence=F2DZB6 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J013001O03;Expression=AK065112;TENOR=Os09t0517900-01;KEGG=Os09t0517900-01
Chr09	irgsp1_rep	five_prime_UTR	20196707	20196752	.	+	.	Parent=Os09t0517900-01
Chr09	irgsp1_rep	CDS	20196753	20197475	.	+	0	Parent=Os09t0517900-01
Chr09	irgsp1_rep	CDS	20202793	20203518	.	+	0	Parent=Os09t0517900-01
Chr09	irgsp1_rep	three_prime_UTR	20203519	20203865	.	+	.	Parent=Os09t0517900-01
Chr09	irgsp1_rep	mRNA	20196750	20203499	.	-	.	ID=Os09t0517950-00;Name=Os09t0517950-00;Locus_id=Os09g0517950;Note=Hypothetical protein.;Transcript_evidence=tplb0047b20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0517950-00
Chr09	irgsp1_rep	five_prime_UTR	20203498	20203499	.	-	.	Parent=Os09t0517950-00
Chr09	irgsp1_rep	CDS	20202783	20203497	.	-	0	Parent=Os09t0517950-00
Chr09	irgsp1_rep	CDS	20197447	20197463	.	-	2	Parent=Os09t0517950-00
Chr09	irgsp1_rep	three_prime_UTR	20196750	20197446	.	-	.	Parent=Os09t0517950-00
Chr09	irgsp1_rep	mRNA	20214433	20215935	.	+	.	ID=Os09t0518000-00;Name=Os09t0518000-00;Locus_id=Os09g0518000;CGSNL Gene Symbol=UGT74H4;CGSNL Gene Name=UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 74H4;Oryzabase Gene Symbol Synonym(s)=OsUGT74H4%2C SGT1%2C OsSGT1;Oryzabase Gene Name Synonym(s)=UDP-glucose-dependent glycosyltransferase 74H4%2C SA glucosyltransferase1%2C SA glucosyltransferase 1%2C salicylic acid glucosyltransferase 1;Note=Similar to indole-3-acetate beta-glucosyltransferase.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001150551.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);Oryzabase=21820;TENOR=Os09t0518000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	20214433	20215935	.	+	0	Parent=Os09t0518000-00
Chr09	irgsp1_rep	mRNA	20222176	20223992	.	+	.	ID=Os09t0518200-01;Name=Os09t0518200-01;Locus_id=Os09g0518200;Oryzabase Gene Symbol Synonym(s)=OsSGT%2C SGT%2C UGT74H3;Oryzabase Gene Name Synonym(s)=salicylic acid glucosyltransferase%2C SA-glucosyltransferase%2C UDP-glucose-dependent glycosyltransferase 74H3;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK064395 (DDBJ%2C Best hit),AK121725 (DDBJ%2C Best hit);ORF_evidence=NP_001150551.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=002-108-G04,J033082A13;Oryzabase=9968;TENOR=Os09t0518200-01
Chr09	irgsp1_rep	five_prime_UTR	20222176	20222229	.	+	.	Parent=Os09t0518200-01
Chr09	irgsp1_rep	CDS	20222230	20222901	.	+	0	Parent=Os09t0518200-01
Chr09	irgsp1_rep	CDS	20222992	20223729	.	+	0	Parent=Os09t0518200-01
Chr09	irgsp1_rep	three_prime_UTR	20223730	20223992	.	+	.	Parent=Os09t0518200-01
Chr09	irgsp1_rep	mRNA	20222211	20223692	.	-	.	ID=Os09t0518266-00;Name=Os09t0518266-00;Locus_id=Os09g0518266;Note=Hypothetical protein.;Transcript_evidence=tplb0058m17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0518266-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	20223654	20223692	.	-	.	Parent=Os09t0518266-00
Chr09	irgsp1_rep	CDS	20222967	20223653	.	-	0	Parent=Os09t0518266-00
Chr09	irgsp1_rep	CDS	20222442	20222882	.	-	0	Parent=Os09t0518266-00
Chr09	irgsp1_rep	three_prime_UTR	20222211	20222441	.	-	.	Parent=Os09t0518266-00
Chr09	irgsp1_rep	mRNA	20228608	20230488	.	-	.	ID=Os09t0518332-00;Name=Os09t0518332-00;Locus_id=Os09g0518332;Note=Hypothetical protein.;Transcript_evidence=tplb0047b20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0518332-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	20229792	20230488	.	-	.	Parent=Os09t0518332-00
Chr09	irgsp1_rep	CDS	20229771	20229791	.	-	0	Parent=Os09t0518332-00
Chr09	irgsp1_rep	CDS	20228619	20229332	.	-	0	Parent=Os09t0518332-00
Chr09	irgsp1_rep	three_prime_UTR	20228608	20228618	.	-	.	Parent=Os09t0518332-00
Chr09	irgsp1_rep	mRNA	20228670	20233951	.	+	.	ID=Os09t0518400-00;Name=Os09t0518400-00;Locus_id=Os09g0518400;Note=Similar to UDP-glycosyltransferase UGT74H5.;Transcript_evidence=ab initio prediction;ORF_evidence=C4MF47 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os09t0518400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	20228670	20229344	.	+	0	Parent=Os09t0518400-00
Chr09	irgsp1_rep	CDS	20229778	20229872	.	+	0	Parent=Os09t0518400-00
Chr09	irgsp1_rep	CDS	20233507	20233951	.	+	1	Parent=Os09t0518400-00
Chr09	irgsp1_rep	mRNA	20236499	20240544	.	+	.	ID=Os09t0518500-01;Name=Os09t0518500-01;Locus_id=Os09g0518500;Note=Ankyrin repeat containing protein.;Transcript_evidence=AK100826 (DDBJ%2C Best hit);ORF_evidence=NP_001151505.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J023122L09;Expression=AK100826;TENOR=Os09t0518500-01;KEGG=Os09t0518500-01
Chr09	irgsp1_rep	five_prime_UTR	20236499	20236756	.	+	.	Parent=Os09t0518500-01
Chr09	irgsp1_rep	five_prime_UTR	20237096	20237462	.	+	.	Parent=Os09t0518500-01
Chr09	irgsp1_rep	CDS	20237463	20237871	.	+	0	Parent=Os09t0518500-01
Chr09	irgsp1_rep	CDS	20238523	20238932	.	+	2	Parent=Os09t0518500-01
Chr09	irgsp1_rep	CDS	20239318	20240187	.	+	0	Parent=Os09t0518500-01
Chr09	irgsp1_rep	three_prime_UTR	20240188	20240544	.	+	.	Parent=Os09t0518500-01
Chr09	irgsp1_rep	mRNA	20237772	20240546	.	+	.	ID=Os09t0518500-02;Name=Os09t0518500-02;Locus_id=Os09g0518500;Note=Similar to protein binding protein.;Transcript_evidence=AK060782 (DDBJ%2C Best hit);ORF_evidence=A2Z364 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=001-033-C08;Expression=AK060782;TENOR=Os09t0518500-02;KEGG=Os09t0518500-02
Chr09	irgsp1_rep	CDS	20237772	20237871	.	+	0	Parent=Os09t0518500-02
Chr09	irgsp1_rep	CDS	20238523	20238932	.	+	2	Parent=Os09t0518500-02
Chr09	irgsp1_rep	CDS	20239318	20240187	.	+	0	Parent=Os09t0518500-02
Chr09	irgsp1_rep	three_prime_UTR	20240188	20240546	.	+	.	Parent=Os09t0518500-02
Chr09	irgsp1_rep	mRNA	20239438	20240616	.	+	.	ID=Os09t0518500-03;Name=Os09t0518500-03;Locus_id=Os09g0518500;Note=Similar to protein binding protein.;Transcript_evidence=AK065660 (DDBJ%2C Best hit);ORF_evidence=NP_001151505.1 (RefSeq);NIAS_FLcDNA=J013042E22;Expression=AK065660;TENOR=Os09t0518500-03;KEGG=Os09t0518500-03
Chr09	irgsp1_rep	CDS	20239438	20240187	.	+	0	Parent=Os09t0518500-03
Chr09	irgsp1_rep	three_prime_UTR	20240188	20240616	.	+	.	Parent=Os09t0518500-03
Chr09	irgsp1_rep	mRNA	20241489	20243398	.	-	.	ID=Os09t0518600-00;Name=Os09t0518600-00;Locus_id=Os09g0518600;Note=Conserved hypothetical protein.;Transcript_evidence=BT035222 (DDBJ);ORF_evidence=NP_001063688.1 (RefSeq);TENOR=Os09t0518600-00;KEGG=Os09t0518600-00
Chr09	irgsp1_rep	five_prime_UTR	20243299	20243398	.	-	.	Parent=Os09t0518600-00
Chr09	irgsp1_rep	five_prime_UTR	20243101	20243238	.	-	.	Parent=Os09t0518600-00
Chr09	irgsp1_rep	CDS	20242929	20243100	.	-	0	Parent=Os09t0518600-00
Chr09	irgsp1_rep	CDS	20242575	20242653	.	-	2	Parent=Os09t0518600-00
Chr09	irgsp1_rep	CDS	20242381	20242495	.	-	1	Parent=Os09t0518600-00
Chr09	irgsp1_rep	CDS	20241489	20242127	.	-	0	Parent=Os09t0518600-00
Chr09	irgsp1_rep	mRNA	20243654	20248528	.	-	.	ID=Os09t0518700-01;Name=Os09t0518700-01;Locus_id=Os09g0518700;CGSNL Gene Symbol=ITPK6;CGSNL Gene Name=INOSITOL 1%2C3%2C4-TRISPHOSPHATE 5/6-KINASE 6;Oryzabase Gene Symbol Synonym(s)=OsITPK6%2C OsITP5/6K-6%2C ITP5/6K-6;Oryzabase Gene Name Synonym(s)=inositol 1%2C 3%2C 4-trisphosphate 5/6-kinase 6;Note=Inositol 1%2C 3%2C 4-trisphosphate 56-kinase family protein.;Transcript_evidence=AK102571 (DDBJ%2C Best hit);ORF_evidence=NP_001151270.1 (RefSeq);GO=Biological Process: inositol trisphosphate metabolic process (GO:0032957),Cellular Component: intracellular (GO:0005622),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: ATP binding (GO:0005524),Molecular Function: inositol tetrakisphosphate 1-kinase activity (GO:0047325),Molecular Function: inositol-1%2C3%2C4-trisphosphate 6-kinase activity (GO:0052725),Molecular Function: inositol-1%2C3%2C4-trisphosphate 5-kinase activity (GO:0052726);InterPro=Inositol-tetrakisphosphate 1-kinase (IPR008656),Inositol-tetrakisphosphate 1-kinase 4 (IPR017418);NIAS_FLcDNA=J033097M05;Oryzabase=11442;TENOR=Os09t0518700-01
Chr09	irgsp1_rep	five_prime_UTR	20248527	20248528	.	-	.	Parent=Os09t0518700-01
Chr09	irgsp1_rep	CDS	20248242	20248526	.	-	0	Parent=Os09t0518700-01
Chr09	irgsp1_rep	CDS	20247670	20247705	.	-	0	Parent=Os09t0518700-01
Chr09	irgsp1_rep	CDS	20246860	20247055	.	-	0	Parent=Os09t0518700-01
Chr09	irgsp1_rep	CDS	20246672	20246760	.	-	2	Parent=Os09t0518700-01
Chr09	irgsp1_rep	CDS	20246509	20246580	.	-	0	Parent=Os09t0518700-01
Chr09	irgsp1_rep	CDS	20246227	20246429	.	-	0	Parent=Os09t0518700-01
Chr09	irgsp1_rep	CDS	20245811	20245964	.	-	1	Parent=Os09t0518700-01
Chr09	irgsp1_rep	CDS	20245241	20245354	.	-	0	Parent=Os09t0518700-01
Chr09	irgsp1_rep	CDS	20244999	20245061	.	-	0	Parent=Os09t0518700-01
Chr09	irgsp1_rep	CDS	20244578	20244714	.	-	0	Parent=Os09t0518700-01
Chr09	irgsp1_rep	CDS	20244315	20244462	.	-	1	Parent=Os09t0518700-01
Chr09	irgsp1_rep	CDS	20244008	20244154	.	-	0	Parent=Os09t0518700-01
Chr09	irgsp1_rep	three_prime_UTR	20243654	20244007	.	-	.	Parent=Os09t0518700-01
Chr09	irgsp1_rep	mRNA	20243654	20248436	.	-	.	ID=Os09t0518700-02;Name=Os09t0518700-02;Locus_id=Os09g0518700;CGSNL Gene Symbol=ITPK6;CGSNL Gene Name=INOSITOL 1%2C3%2C4-TRISPHOSPHATE 5/6-KINASE 6;Oryzabase Gene Symbol Synonym(s)=OsITPK6%2C OsITP5/6K-6%2C ITP5/6K-6;Oryzabase Gene Name Synonym(s)=inositol 1%2C 3%2C 4-trisphosphate 5/6-kinase 6;Note=Similar to inositol 1%2C 3%2C 4-trisphosphate 5/6-kinase family protein.;Transcript_evidence=AK064305 (DDBJ%2C Best hit);ORF_evidence=NP_001151270.1 (RefSeq);GO=Biological Process: inositol trisphosphate metabolic process (GO:0032957),Cellular Component: intracellular (GO:0005622),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: ATP binding (GO:0005524),Molecular Function: inositol tetrakisphosphate 1-kinase activity (GO:0047325),Molecular Function: inositol-1%2C3%2C4-trisphosphate 6-kinase activity (GO:0052725),Molecular Function: inositol-1%2C3%2C4-trisphosphate 5-kinase activity (GO:0052726);InterPro=Inositol-tetrakisphosphate 1-kinase (IPR008656),Inositol-tetrakisphosphate 1-kinase 4 (IPR017418);NIAS_FLcDNA=002-107-B07;Oryzabase=11442;TENOR=Os09t0518700-02
Chr09	irgsp1_rep	five_prime_UTR	20248398	20248436	.	-	.	Parent=Os09t0518700-02
Chr09	irgsp1_rep	CDS	20248242	20248397	.	-	0	Parent=Os09t0518700-02
Chr09	irgsp1_rep	CDS	20247670	20247705	.	-	0	Parent=Os09t0518700-02
Chr09	irgsp1_rep	CDS	20246860	20247055	.	-	0	Parent=Os09t0518700-02
Chr09	irgsp1_rep	CDS	20246672	20246760	.	-	2	Parent=Os09t0518700-02
Chr09	irgsp1_rep	CDS	20246509	20246580	.	-	0	Parent=Os09t0518700-02
Chr09	irgsp1_rep	CDS	20246227	20246429	.	-	0	Parent=Os09t0518700-02
Chr09	irgsp1_rep	CDS	20245811	20245964	.	-	1	Parent=Os09t0518700-02
Chr09	irgsp1_rep	CDS	20245241	20245354	.	-	0	Parent=Os09t0518700-02
Chr09	irgsp1_rep	CDS	20244999	20245061	.	-	0	Parent=Os09t0518700-02
Chr09	irgsp1_rep	CDS	20244578	20244714	.	-	0	Parent=Os09t0518700-02
Chr09	irgsp1_rep	CDS	20244315	20244462	.	-	1	Parent=Os09t0518700-02
Chr09	irgsp1_rep	CDS	20244008	20244154	.	-	0	Parent=Os09t0518700-02
Chr09	irgsp1_rep	three_prime_UTR	20243654	20244007	.	-	.	Parent=Os09t0518700-02
Chr09	irgsp1_rep	mRNA	20249609	20250111	.	-	.	ID=Os09t0518750-00;Name=Os09t0518750-00;Locus_id=Os09g0518750;Note=Conserved hypothetical protein.;Transcript_evidence=EU971372 (DDBJ);ORF_evidence=B8BDK1 (UniProt);TENOR=Os09t0518750-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	20249623	20250111	.	-	0	Parent=Os09t0518750-00
Chr09	irgsp1_rep	three_prime_UTR	20249609	20249622	.	-	.	Parent=Os09t0518750-00
Chr09	irgsp1_rep	mRNA	20252280	20254558	.	+	.	ID=Os09t0518800-00;Name=Os09t0518800-00;Locus_id=Os09g0518800;Note=Conserved hypothetical protein.;Transcript_evidence=CT835849 (DDBJ%2C Best hit);ORF_evidence=XP_002460536.1 (RefSeq);TENOR=Os09t0518800-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	20252280	20252280	.	+	.	Parent=Os09t0518800-00
Chr09	irgsp1_rep	CDS	20252281	20252381	.	+	0	Parent=Os09t0518800-00
Chr09	irgsp1_rep	CDS	20252492	20252593	.	+	1	Parent=Os09t0518800-00
Chr09	irgsp1_rep	CDS	20254159	20254204	.	+	1	Parent=Os09t0518800-00
Chr09	irgsp1_rep	three_prime_UTR	20254205	20254558	.	+	.	Parent=Os09t0518800-00
Chr09	irgsp1_rep	mRNA	20258663	20259964	.	-	.	ID=Os09t0518900-01;Name=Os09t0518900-01;Locus_id=Os09g0518900;Note=Rhamnosyl O-methyltransferase/Cephalosporin hydroxylase domain containing protein.;Transcript_evidence=AK072714 (DDBJ%2C Best hit);ORF_evidence=A2Z368 (UniProt);GO=Biological Process: lipid biosynthetic process (GO:0008610),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Rhamnosyl O-methyltransferase/Cephalosporin hydroxylase (IPR007072);NIAS_FLcDNA=J023142B15;Expression=AK072714;TENOR=Os09t0518900-01;KEGG=Os09t0518900-01
Chr09	irgsp1_rep	five_prime_UTR	20259933	20259964	.	-	.	Parent=Os09t0518900-01
Chr09	irgsp1_rep	CDS	20258898	20259932	.	-	0	Parent=Os09t0518900-01
Chr09	irgsp1_rep	three_prime_UTR	20258663	20258897	.	-	.	Parent=Os09t0518900-01
Chr09	irgsp1_rep	mRNA	20258770	20260195	.	+	.	ID=Os09t0519000-01;Name=Os09t0519000-01;Locus_id=Os09g0519000;Note=Hypothetical protein.;Transcript_evidence=AK111425 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-182-H01;TENOR=Os09t0519000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	20258770	20258771	.	+	.	Parent=Os09t0519000-01
Chr09	irgsp1_rep	CDS	20258772	20259971	.	+	0	Parent=Os09t0519000-01
Chr09	irgsp1_rep	three_prime_UTR	20259972	20259985	.	+	.	Parent=Os09t0519000-01
Chr09	irgsp1_rep	three_prime_UTR	20260008	20260195	.	+	.	Parent=Os09t0519000-01
Chr09	irgsp1_rep	mRNA	20268863	20269717	.	-	.	ID=Os09t0519100-00;Name=Os09t0519100-00;Locus_id=Os09g0519100;Oryzabase Gene Symbol Synonym(s)=OsbHLH167;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 167;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=FP097341 (DDBJ);ORF_evidence=NP_001063693.1 (RefSeq);InterPro=Helix-loop-helix DNA-binding (IPR011598);Oryzabase=15437;TENOR=Os09t0519100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	20269547	20269717	.	-	0	Parent=Os09t0519100-00
Chr09	irgsp1_rep	CDS	20268863	20269486	.	-	0	Parent=Os09t0519100-00
Chr09	irgsp1_rep	mRNA	20272906	20273688	.	-	.	ID=Os09t0519150-00;Name=Os09t0519150-00;Locus_id=Os09g0519150;Note=Non-protein coding transcript.;Transcript_evidence=CT836560 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os09t0519150-00
Chr09	irgsp1_rep	exon	20272906	20273688	.	-	.	Parent=Os09t0519150-00
Chr09	irgsp1_rep	mRNA	20273778	20274376	.	-	.	ID=Os09t0519200-02;Name=Os09t0519200-02;Locus_id=Os09g0519200;Note=Conserved hypothetical protein.;Transcript_evidence=AK063004 (DDBJ%2C Best hit),AK067759 (DDBJ%2C Best hit);ORF_evidence=NP_001066412.1 (RefSeq);NIAS_FLcDNA=001-109-H09,J013119C20;TENOR=Os09t0519200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	20274178	20274376	.	-	.	Parent=Os09t0519200-02
Chr09	irgsp1_rep	CDS	20273778	20274177	.	-	0	Parent=Os09t0519200-02
Chr09	irgsp1_rep	mRNA	20293695	20294066	.	+	.	ID=Os09t0519601-00;Name=Os09t0519601-00;Locus_id=Os09g0519601;Note=Similar to ribosomal protein S7.;Transcript_evidence=EU940710 (DDBJ);ORF_evidence=YP_588404.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S7 (IPR000235),Ribosomal protein S7 domain (IPR023798);TENOR=Os09t0519601-00;KEGG=Os09t0519601-00
Chr09	irgsp1_rep	five_prime_UTR	20293695	20293733	.	+	.	Parent=Os09t0519601-00
Chr09	irgsp1_rep	CDS	20293734	20294066	.	+	0	Parent=Os09t0519601-00
Chr09	irgsp1_rep	mRNA	20305822	20306814	.	+	.	ID=Os09t0520000-01;Name=Os09t0520000-01;Locus_id=Os09g0520000;Note=Hypothetical protein.;Transcript_evidence=AK111321 (DDBJ%2C Best hit),AK063405 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-181-D05,001-115-A07;Expression=AK111321;TENOR=Os09t0520000-01;KEGG=Os09t0520000-01
Chr09	irgsp1_rep	five_prime_UTR	20305822	20306193	.	+	.	Parent=Os09t0520000-01
Chr09	irgsp1_rep	CDS	20306194	20306274	.	+	0	Parent=Os09t0520000-01
Chr09	irgsp1_rep	CDS	20306403	20306570	.	+	0	Parent=Os09t0520000-01
Chr09	irgsp1_rep	three_prime_UTR	20306571	20306814	.	+	.	Parent=Os09t0520000-01
Chr09	irgsp1_rep	mRNA	20313568	20315714	.	-	.	ID=Os09t0520100-01;Name=Os09t0520100-01;Locus_id=Os09g0520100;Note=DNA polymerase delta%2C subunit 4 family protein.;Transcript_evidence=AK119678 (DDBJ%2C Best hit);ORF_evidence=B6U9B6 (UniProt);GO=Biological Process: DNA replication (GO:0006260),Cellular Component: nucleus (GO:0005634);InterPro=DNA polymerase delta%2C subunit 4 (IPR007218);NIAS_FLcDNA=002-156-H08;Expression=AK119678;TENOR=Os09t0520100-01;KEGG=Os09t0520100-01
Chr09	irgsp1_rep	five_prime_UTR	20315514	20315714	.	-	.	Parent=Os09t0520100-01
Chr09	irgsp1_rep	five_prime_UTR	20314408	20314448	.	-	.	Parent=Os09t0520100-01
Chr09	irgsp1_rep	CDS	20314233	20314407	.	-	0	Parent=Os09t0520100-01
Chr09	irgsp1_rep	CDS	20313928	20314148	.	-	2	Parent=Os09t0520100-01
Chr09	irgsp1_rep	three_prime_UTR	20313568	20313927	.	-	.	Parent=Os09t0520100-01
Chr09	irgsp1_rep	mRNA	20313593	20315695	.	-	.	ID=Os09t0520100-02;Name=Os09t0520100-02;Locus_id=Os09g0520100;Note=DNA polymerase delta%2C subunit 4 family protein.;Transcript_evidence=AK120041 (DDBJ%2C Best hit);ORF_evidence=B6U9B6 (UniProt);GO=Biological Process: DNA replication (GO:0006260),Cellular Component: nucleus (GO:0005634);InterPro=DNA polymerase delta%2C subunit 4 (IPR007218);NIAS_FLcDNA=002-188-E10;Expression=AK120041;TENOR=Os09t0520100-02;KEGG=Os09t0520100-02
Chr09	irgsp1_rep	five_prime_UTR	20315514	20315695	.	-	.	Parent=Os09t0520100-02
Chr09	irgsp1_rep	five_prime_UTR	20314408	20314440	.	-	.	Parent=Os09t0520100-02
Chr09	irgsp1_rep	CDS	20314233	20314407	.	-	0	Parent=Os09t0520100-02
Chr09	irgsp1_rep	CDS	20313928	20314148	.	-	2	Parent=Os09t0520100-02
Chr09	irgsp1_rep	three_prime_UTR	20313593	20313927	.	-	.	Parent=Os09t0520100-02
Chr09	irgsp1_rep	mRNA	20316914	20321175	.	+	.	ID=Os09t0520200-00;Name=Os09t0520200-00;Locus_id=Os09g0520200;Note=Similar to abhydrolase domain-containing protein 5.;Transcript_evidence=EU961704 (DDBJ);ORF_evidence=B4FAQ7 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Alpha/beta hydrolase fold-1 (IPR000073),Epoxide hydrolase-like (IPR000639);TENOR=Os09t0520200-00;KEGG=Os09t0520200-00
Chr09	irgsp1_rep	five_prime_UTR	20316914	20316978	.	+	.	Parent=Os09t0520200-00
Chr09	irgsp1_rep	CDS	20316979	20317196	.	+	0	Parent=Os09t0520200-00
Chr09	irgsp1_rep	CDS	20318172	20318408	.	+	1	Parent=Os09t0520200-00
Chr09	irgsp1_rep	CDS	20319078	20319124	.	+	1	Parent=Os09t0520200-00
Chr09	irgsp1_rep	CDS	20319425	20319543	.	+	2	Parent=Os09t0520200-00
Chr09	irgsp1_rep	CDS	20319621	20319781	.	+	0	Parent=Os09t0520200-00
Chr09	irgsp1_rep	CDS	20319872	20319981	.	+	1	Parent=Os09t0520200-00
Chr09	irgsp1_rep	CDS	20320064	20320163	.	+	2	Parent=Os09t0520200-00
Chr09	irgsp1_rep	CDS	20320653	20320780	.	+	1	Parent=Os09t0520200-00
Chr09	irgsp1_rep	CDS	20320872	20320996	.	+	2	Parent=Os09t0520200-00
Chr09	irgsp1_rep	three_prime_UTR	20320997	20321175	.	+	.	Parent=Os09t0520200-00
Chr09	irgsp1_rep	mRNA	20321887	20323986	.	+	.	ID=Os09t0520300-00;Name=Os09t0520300-00;Locus_id=Os09g0520300;Note=Hypothetical conserved gene.;Transcript_evidence=BT033564 (DDBJ);ORF_evidence=Q650U4 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os09t0520300-00;KEGG=Os09t0520300-00
Chr09	irgsp1_rep	CDS	20321887	20323923	.	+	0	Parent=Os09t0520300-00
Chr09	irgsp1_rep	three_prime_UTR	20323924	20323986	.	+	.	Parent=Os09t0520300-00
Chr09	irgsp1_rep	mRNA	20326567	20330537	.	+	.	ID=Os09t0520400-01;Name=Os09t0520400-01;Locus_id=Os09g0520400;RAP-DB Gene Symbol Synonym(s)=OsbZIP76;RAP-DB Gene Name Synonym(s)=b-ZIP transcription factor 76;CGSNL Gene Symbol=BZIP76;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 76;Oryzabase Gene Symbol Synonym(s)=OsbZIP76%2C DLN229%2C OsDLN229;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 76%2C DLN repressor 229%2C DLN motif protein 229;Note=Putative transcription factor (OsbZIP76 alone lacked transcriptional activation activity)%2C Regulation of endosperm cellularization%2C Regulation of endosperm development;Transcript_evidence=AK243019;ORF_evidence=B9G4L6;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA-binding transcription factor activity (GO:0003700);InterPro=Basic-leucine zipper domain (IPR004827);NIAS_FLcDNA=J090099F23;Manual Curation=July 7%2C 2020;Literature_PMID=32621654;Oryzabase=10155;TENOR=Os09t0520400-01;KEGG=Os09t0520400-01;Subcellular location=nucleus (GO:0005634) [mainly], cytoplasm (GO:0005737)
Chr09	irgsp1_rep	five_prime_UTR	20326567	20326605	.	+	.	Parent=Os09t0520400-01
Chr09	irgsp1_rep	CDS	20326606	20327175	.	+	0	Parent=Os09t0520400-01
Chr09	irgsp1_rep	CDS	20327411	20327802	.	+	0	Parent=Os09t0520400-01
Chr09	irgsp1_rep	CDS	20328139	20328271	.	+	1	Parent=Os09t0520400-01
Chr09	irgsp1_rep	CDS	20328351	20328435	.	+	0	Parent=Os09t0520400-01
Chr09	irgsp1_rep	CDS	20329892	20330052	.	+	2	Parent=Os09t0520400-01
Chr09	irgsp1_rep	three_prime_UTR	20330053	20330537	.	+	.	Parent=Os09t0520400-01
Chr09	irgsp1_rep	mRNA	20330883	20332328	.	-	.	ID=Os09t0520500-01;Name=Os09t0520500-01;Locus_id=Os09g0520500;Note=Conserved hypothetical protein.;Transcript_evidence=AK107978 (DDBJ%2C Best hit);ORF_evidence=B9G4L7 (UniProt);NIAS_FLcDNA=002-135-E03;Expression=AK107978;TENOR=Os09t0520500-01;KEGG=Os09t0520500-01
Chr09	irgsp1_rep	five_prime_UTR	20332218	20332328	.	-	.	Parent=Os09t0520500-01
Chr09	irgsp1_rep	CDS	20332090	20332217	.	-	0	Parent=Os09t0520500-01
Chr09	irgsp1_rep	CDS	20331166	20331388	.	-	1	Parent=Os09t0520500-01
Chr09	irgsp1_rep	three_prime_UTR	20330883	20331165	.	-	.	Parent=Os09t0520500-01
Chr09	irgsp1_rep	mRNA	20331188	20332277	.	+	.	ID=Os09t0520525-00;Name=Os09t0520525-00;Locus_id=Os09g0520525;Note=Non-protein coding transcript.;Transcript_evidence=EU947040 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0520525-00
Chr09	irgsp1_rep	exon	20331188	20331321	.	+	.	Parent=Os09t0520525-00
Chr09	irgsp1_rep	exon	20332018	20332277	.	+	.	Parent=Os09t0520525-00
Chr09	irgsp1_rep	mRNA	20333919	20336386	.	-	.	ID=Os09t0520550-01;Name=Os09t0520550-01;Locus_id=Os09g0520550;Note=Similar to predicted protein.;Transcript_evidence=AK242578 (DDBJ%2C Best hit);ORF_evidence=NP_001052589.1 (RefSeq);NIAS_FLcDNA=J090009I02;TENOR=Os09t0520550-01;KEGG=Os09t0520550-01
Chr09	irgsp1_rep	five_prime_UTR	20335532	20336386	.	-	.	Parent=Os09t0520550-01
Chr09	irgsp1_rep	CDS	20335277	20335531	.	-	0	Parent=Os09t0520550-01
Chr09	irgsp1_rep	three_prime_UTR	20335235	20335276	.	-	.	Parent=Os09t0520550-01
Chr09	irgsp1_rep	three_prime_UTR	20334779	20334847	.	-	.	Parent=Os09t0520550-01
Chr09	irgsp1_rep	three_prime_UTR	20333919	20334389	.	-	.	Parent=Os09t0520550-01
Chr09	irgsp1_rep	mRNA	20337186	20340505	.	-	.	ID=Os09t0520600-01;Name=Os09t0520600-01;Locus_id=Os09g0520600;Note=Bile acid:sodium symporter family protein.;Transcript_evidence=AK101895 (DDBJ%2C Best hit);ORF_evidence=NP_001150034.1 (RefSeq);GO=Biological Process: sodium ion transport (GO:0006814),Cellular Component: membrane (GO:0016020),Molecular Function: bile acid:sodium symporter activity (GO:0008508);InterPro=Bile acid:sodium symporter (IPR002657);NIAS_FLcDNA=J033070P09;Expression=AK101895;TENOR=Os09t0520600-01;KEGG=Os09t0520600-01
Chr09	irgsp1_rep	five_prime_UTR	20340426	20340505	.	-	.	Parent=Os09t0520600-01
Chr09	irgsp1_rep	CDS	20340305	20340425	.	-	0	Parent=Os09t0520600-01
Chr09	irgsp1_rep	CDS	20339871	20339974	.	-	2	Parent=Os09t0520600-01
Chr09	irgsp1_rep	CDS	20339615	20339745	.	-	0	Parent=Os09t0520600-01
Chr09	irgsp1_rep	CDS	20338940	20339133	.	-	1	Parent=Os09t0520600-01
Chr09	irgsp1_rep	CDS	20338596	20338848	.	-	2	Parent=Os09t0520600-01
Chr09	irgsp1_rep	CDS	20338183	20338436	.	-	1	Parent=Os09t0520600-01
Chr09	irgsp1_rep	CDS	20338018	20338100	.	-	2	Parent=Os09t0520600-01
Chr09	irgsp1_rep	CDS	20337587	20337652	.	-	0	Parent=Os09t0520600-01
Chr09	irgsp1_rep	three_prime_UTR	20337186	20337586	.	-	.	Parent=Os09t0520600-01
Chr09	irgsp1_rep	mRNA	20342788	20347184	.	+	.	ID=Os09t0520700-01;Name=Os09t0520700-01;Locus_id=Os09g0520700;Oryzabase Gene Symbol Synonym(s)=OsRH7;Oryzabase Gene Name Synonym(s)=RNA helicase 7;Note=Similar to RNA helicase.;Transcript_evidence=AK101403 (DDBJ%2C Best hit);ORF_evidence=A6MCY9 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=RNA helicase%2C ATP-dependent%2C DEAD-box%2C conserved site (IPR000629),Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),GUCT (IPR012562),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=J033037G04;Oryzabase=19127;Expression=AK101403;TENOR=Os09t0520700-01;KEGG=Os09t0520700-01
Chr09	irgsp1_rep	five_prime_UTR	20342788	20342849	.	+	.	Parent=Os09t0520700-01
Chr09	irgsp1_rep	CDS	20342850	20343338	.	+	0	Parent=Os09t0520700-01
Chr09	irgsp1_rep	CDS	20343816	20343950	.	+	0	Parent=Os09t0520700-01
Chr09	irgsp1_rep	CDS	20344032	20344172	.	+	0	Parent=Os09t0520700-01
Chr09	irgsp1_rep	CDS	20344264	20344375	.	+	0	Parent=Os09t0520700-01
Chr09	irgsp1_rep	CDS	20344577	20344647	.	+	2	Parent=Os09t0520700-01
Chr09	irgsp1_rep	CDS	20344744	20344898	.	+	0	Parent=Os09t0520700-01
Chr09	irgsp1_rep	CDS	20344977	20345088	.	+	1	Parent=Os09t0520700-01
Chr09	irgsp1_rep	CDS	20345425	20345526	.	+	0	Parent=Os09t0520700-01
Chr09	irgsp1_rep	CDS	20345609	20345669	.	+	0	Parent=Os09t0520700-01
Chr09	irgsp1_rep	CDS	20345744	20345915	.	+	2	Parent=Os09t0520700-01
Chr09	irgsp1_rep	CDS	20346005	20346101	.	+	1	Parent=Os09t0520700-01
Chr09	irgsp1_rep	CDS	20346185	20346279	.	+	0	Parent=Os09t0520700-01
Chr09	irgsp1_rep	CDS	20346374	20346507	.	+	1	Parent=Os09t0520700-01
Chr09	irgsp1_rep	CDS	20346701	20346915	.	+	2	Parent=Os09t0520700-01
Chr09	irgsp1_rep	three_prime_UTR	20346916	20347184	.	+	.	Parent=Os09t0520700-01
Chr09	irgsp1_rep	mRNA	20345467	20347132	.	+	.	ID=Os09t0520700-02;Name=Os09t0520700-02;Locus_id=Os09g0520700;Oryzabase Gene Symbol Synonym(s)=OsRH7;Oryzabase Gene Name Synonym(s)=RNA helicase 7;Note=Similar to DEAD/DEAH box helicase family protein.;Transcript_evidence=AK060889 (DDBJ%2C Best hit);ORF_evidence=A6MCY9 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524);InterPro=Helicase%2C C-terminal (IPR001650),GUCT (IPR012562);NIAS_FLcDNA=001-035-B11;Oryzabase=19127;Expression=AK060889;TENOR=Os09t0520700-02;KEGG=Os09t0520700-02
Chr09	irgsp1_rep	CDS	20345467	20345526	.	+	0	Parent=Os09t0520700-02
Chr09	irgsp1_rep	CDS	20345609	20345669	.	+	0	Parent=Os09t0520700-02
Chr09	irgsp1_rep	CDS	20345744	20345915	.	+	2	Parent=Os09t0520700-02
Chr09	irgsp1_rep	CDS	20346005	20346101	.	+	1	Parent=Os09t0520700-02
Chr09	irgsp1_rep	CDS	20346185	20346279	.	+	0	Parent=Os09t0520700-02
Chr09	irgsp1_rep	CDS	20346374	20346507	.	+	1	Parent=Os09t0520700-02
Chr09	irgsp1_rep	CDS	20346701	20346915	.	+	2	Parent=Os09t0520700-02
Chr09	irgsp1_rep	three_prime_UTR	20346916	20347132	.	+	.	Parent=Os09t0520700-02
Chr09	irgsp1_rep	mRNA	20349158	20350901	.	-	.	ID=Os09t0520800-01;Name=Os09t0520800-01;Locus_id=Os09g0520800;Note=Glycoside hydrolase%2C family 29 (alpha-L-fucosidase) protein.;Transcript_evidence=AK109462 (DDBJ%2C Best hit);ORF_evidence=A6MCZ0 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: cell adhesion (GO:0007155),Molecular Function: catalytic activity (GO:0003824),Molecular Function: alpha-L-fucosidase activity (GO:0004560),Molecular Function: cation binding (GO:0043169);InterPro=Coagulation factor 5/8 C-terminal type domain (IPR000421),Glycoside hydrolase%2C family 29 (IPR000933),Galactose-binding domain-like (IPR008979),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-127-D03;Expression=AK109462;TENOR=Os09t0520800-01;KEGG=Os09t0520800-01
Chr09	irgsp1_rep	five_prime_UTR	20350882	20350901	.	-	.	Parent=Os09t0520800-01
Chr09	irgsp1_rep	CDS	20350325	20350881	.	-	0	Parent=Os09t0520800-01
Chr09	irgsp1_rep	CDS	20349997	20350236	.	-	1	Parent=Os09t0520800-01
Chr09	irgsp1_rep	CDS	20349229	20349916	.	-	1	Parent=Os09t0520800-01
Chr09	irgsp1_rep	three_prime_UTR	20349158	20349228	.	-	.	Parent=Os09t0520800-01
Chr09	irgsp1_rep	mRNA	20349326	20354014	.	+	.	ID=Os09t0520950-00;Name=Os09t0520950-00;Locus_id=Os09g0520950;Note=Hypothetical protein.;Transcript_evidence=BT065419 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0520950-00
Chr09	irgsp1_rep	CDS	20349326	20349591	.	+	0	Parent=Os09t0520950-00
Chr09	irgsp1_rep	CDS	20353805	20354014	.	+	1	Parent=Os09t0520950-00
Chr09	irgsp1_rep	mRNA	20357410	20359082	.	+	.	ID=Os09t0521100-01;Name=Os09t0521100-01;Locus_id=Os09g0521100;Note=Similar to 3-ketoacyl-CoA synthase.;Transcript_evidence=AK108633 (DDBJ%2C Best hit);ORF_evidence=A6MCZ1 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: metabolic process (GO:0008152),Biological Process: lipid biosynthetic process (GO:0008610),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Very-long-chain 3-ketoacyl-CoA synthase (IPR012392),FAE1/Type III polyketide synthase-like protein (IPR013601),3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (IPR013747),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);NIAS_FLcDNA=002-147-G01;TENOR=Os09t0521100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	20357410	20357411	.	+	.	Parent=Os09t0521100-01
Chr09	irgsp1_rep	CDS	20357412	20357463	.	+	0	Parent=Os09t0521100-01
Chr09	irgsp1_rep	CDS	20357645	20358912	.	+	2	Parent=Os09t0521100-01
Chr09	irgsp1_rep	three_prime_UTR	20358913	20359082	.	+	.	Parent=Os09t0521100-01
Chr09	irgsp1_rep	mRNA	20363949	20365094	.	-	.	ID=Os09t0521300-00;Name=Os09t0521300-00;Locus_id=Os09g0521300;Oryzabase Gene Symbol Synonym(s)=OsTCP25%2C TCP25;Oryzabase Gene Name Synonym(s)=TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 25;Note=Similar to TCP family transcription factor.;Transcript_evidence=ab initio prediction;ORF_evidence=A6MCZ2 (UniProt);InterPro=Transcription factor%2C TCP (IPR005333),Transcription factor TCP subgroup (IPR017887);Oryzabase=12389;TENOR=Os09t0521300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	20363949	20365094	.	-	0	Parent=Os09t0521300-00
Chr09	irgsp1_rep	mRNA	20364268	20364999	.	+	.	ID=Os09t0521350-00;Name=Os09t0521350-00;Locus_id=Os09g0521350;Note=Conserved hypothetical protein.;Transcript_evidence=EU971720 (DDBJ);ORF_evidence=Q6MWF0 (UniProt);TENOR=Os09t0521350-00
Chr09	irgsp1_rep	five_prime_UTR	20364268	20364369	.	+	.	Parent=Os09t0521350-00
Chr09	irgsp1_rep	CDS	20364370	20364999	.	+	0	Parent=Os09t0521350-00
Chr09	irgsp1_rep	mRNA	20367529	20371141	.	+	.	ID=Os09t0521400-01;Name=Os09t0521400-01;Locus_id=Os09g0521400;Note=Similar to HMG-CoA synthase.;Transcript_evidence=AK101064 (DDBJ%2C Best hit),AK063755 (DDBJ%2C Best hit);ORF_evidence=A6MCZ3 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: isoprenoid biosynthetic process (GO:0008299),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydroxymethylglutaryl-CoA synthase activity (GO:0004421);InterPro=Hydroxymethylglutaryl-coenzyme A synthase%2C active site (IPR000590),Hydroxymethylglutaryl-CoA synthase%2C eukaryotic (IPR010122),Hydroxymethylglutaryl-coenzyme A synthase%2C N-terminal (IPR013528),Hydroxymethylglutaryl-coenzyme A synthase C-terminal (IPR013746),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);NIAS_FLcDNA=J033023A13,001-121-A05;TENOR=Os09t0521400-01
Chr09	irgsp1_rep	five_prime_UTR	20367529	20367607	.	+	.	Parent=Os09t0521400-01
Chr09	irgsp1_rep	CDS	20367608	20367676	.	+	0	Parent=Os09t0521400-01
Chr09	irgsp1_rep	CDS	20368078	20368184	.	+	0	Parent=Os09t0521400-01
Chr09	irgsp1_rep	CDS	20368398	20368530	.	+	1	Parent=Os09t0521400-01
Chr09	irgsp1_rep	CDS	20368656	20368799	.	+	0	Parent=Os09t0521400-01
Chr09	irgsp1_rep	CDS	20368908	20369066	.	+	0	Parent=Os09t0521400-01
Chr09	irgsp1_rep	CDS	20369203	20369276	.	+	0	Parent=Os09t0521400-01
Chr09	irgsp1_rep	CDS	20369400	20369475	.	+	1	Parent=Os09t0521400-01
Chr09	irgsp1_rep	CDS	20369593	20369648	.	+	0	Parent=Os09t0521400-01
Chr09	irgsp1_rep	CDS	20369839	20369926	.	+	1	Parent=Os09t0521400-01
Chr09	irgsp1_rep	CDS	20370001	20370141	.	+	0	Parent=Os09t0521400-01
Chr09	irgsp1_rep	CDS	20370230	20370379	.	+	0	Parent=Os09t0521400-01
Chr09	irgsp1_rep	CDS	20370658	20370891	.	+	0	Parent=Os09t0521400-01
Chr09	irgsp1_rep	three_prime_UTR	20370892	20371141	.	+	.	Parent=Os09t0521400-01
Chr09	irgsp1_rep	mRNA	20371770	20375204	.	-	.	ID=Os09t0521500-01;Name=Os09t0521500-01;Locus_id=Os09g0521500;Oryzabase Gene Symbol Synonym(s)=Get3;Oryzabase Gene Name Synonym(s)=Get3 orthologue%2C Guided Entry of Tail-anchored protein 3 ortholog;Note=Similar to Arsenical pump-driving ATPase (EC 3.6.3.16) (Arsenite-translocating ATPase) (Arsenical resistance ATPase) (Arsenite-transporting ATPase) (ARSA) (ASNA-I).;Transcript_evidence=AK071023 (DDBJ%2C Best hit);ORF_evidence=A6MCZ4 (UniProt);GO=Biological Process: detoxification of arsenic-containing substance (GO:0071722),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887);InterPro=Arsenical pump ATPase%2C ArsA/Get3 (IPR016300);NIAS_FLcDNA=J023080G12;Oryzabase=22425;Expression=AK071023;TENOR=Os09t0521500-01;KEGG=Os09t0521500-01 (EC:3.6.3.16)
Chr09	irgsp1_rep	five_prime_UTR	20375050	20375204	.	-	.	Parent=Os09t0521500-01
Chr09	irgsp1_rep	CDS	20374780	20375049	.	-	0	Parent=Os09t0521500-01
Chr09	irgsp1_rep	CDS	20373850	20373971	.	-	0	Parent=Os09t0521500-01
Chr09	irgsp1_rep	CDS	20373582	20373732	.	-	1	Parent=Os09t0521500-01
Chr09	irgsp1_rep	CDS	20373372	20373482	.	-	0	Parent=Os09t0521500-01
Chr09	irgsp1_rep	CDS	20372670	20372808	.	-	0	Parent=Os09t0521500-01
Chr09	irgsp1_rep	CDS	20372272	20372387	.	-	2	Parent=Os09t0521500-01
Chr09	irgsp1_rep	CDS	20372007	20372183	.	-	0	Parent=Os09t0521500-01
Chr09	irgsp1_rep	three_prime_UTR	20371770	20372006	.	-	.	Parent=Os09t0521500-01
Chr09	irgsp1_rep	mRNA	20377622	20378845	.	+	.	ID=Os09t0521700-01;Name=Os09t0521700-01;Locus_id=Os09g0521700;Note=Similar to cDNA clone:001-118-F04%2C full insert sequence.;Transcript_evidence=AK064507 (DDBJ%2C Best hit);ORF_evidence=B8BDK9 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Zinc finger%2C CCHC retroviral-type (IPR013084);NIAS_FLcDNA=002-111-E01;Expression=AK064507;TENOR=Os09t0521700-01;KEGG=Os09t0521700-01
Chr09	irgsp1_rep	five_prime_UTR	20377622	20377767	.	+	.	Parent=Os09t0521700-01
Chr09	irgsp1_rep	CDS	20377768	20378445	.	+	0	Parent=Os09t0521700-01
Chr09	irgsp1_rep	three_prime_UTR	20378446	20378845	.	+	.	Parent=Os09t0521700-01
Chr09	irgsp1_rep	mRNA	20377766	20383803	.	+	.	ID=Os09t0521700-02;Name=Os09t0521700-02;Locus_id=Os09g0521700;Note=Similar to H/ACA ribonucleoprotein complex subunit 1 (Nucleolar protein family A member 1) (snoRNP protein GAR1).;Transcript_evidence=AK063628 (DDBJ%2C Best hit);ORF_evidence=B7E9Q8 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Zinc finger%2C CCHC retroviral-type (IPR013084);NIAS_FLcDNA=001-118-F04;Expression=AK063628;TENOR=Os09t0521700-02;KEGG=Os09t0521700-02
Chr09	irgsp1_rep	five_prime_UTR	20377766	20377767	.	+	.	Parent=Os09t0521700-02
Chr09	irgsp1_rep	CDS	20377768	20378188	.	+	0	Parent=Os09t0521700-02
Chr09	irgsp1_rep	CDS	20383489	20383490	.	+	2	Parent=Os09t0521700-02
Chr09	irgsp1_rep	three_prime_UTR	20383491	20383803	.	+	.	Parent=Os09t0521700-02
Chr09	irgsp1_rep	mRNA	20376807	20387318	.	-	.	ID=Os09t0521800-00;Name=Os09t0521800-00;Locus_id=Os09g0521800;Oryzabase Gene Symbol Synonym(s)=OsSPX-MFS4;Oryzabase Gene Name Synonym(s)=SPX-MFS protein 4;Note=Similar to SPX domain-containing membrane protein OsI_32082.;Transcript_evidence=AK364031 (DDBJ);ORF_evidence=B8BDK8 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=SPX%2C N-terminal (IPR004331),Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);Oryzabase=11850;TENOR=Os09t0521800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	20387193	20387318	.	-	0	Parent=Os09t0521800-00
Chr09	irgsp1_rep	CDS	20386800	20387111	.	-	0	Parent=Os09t0521800-00
Chr09	irgsp1_rep	CDS	20386589	20386696	.	-	0	Parent=Os09t0521800-00
Chr09	irgsp1_rep	CDS	20386171	20386282	.	-	0	Parent=Os09t0521800-00
Chr09	irgsp1_rep	CDS	20385657	20386005	.	-	2	Parent=Os09t0521800-00
Chr09	irgsp1_rep	CDS	20384855	20385168	.	-	1	Parent=Os09t0521800-00
Chr09	irgsp1_rep	CDS	20384138	20384510	.	-	2	Parent=Os09t0521800-00
Chr09	irgsp1_rep	CDS	20376829	20377207	.	-	1	Parent=Os09t0521800-00
Chr09	irgsp1_rep	three_prime_UTR	20376807	20376828	.	-	.	Parent=Os09t0521800-00
Chr09	irgsp1_rep	mRNA	20389919	20393906	.	+	.	ID=Os09t0521900-01;Name=Os09t0521900-01;Locus_id=Os09g0521900;RAP-DB Gene Symbol Synonym(s)=RAD%2C OsGEN1%2C rad%2C rad*%2C OsRAD%2C GEN1%2C OsGEN-L;RAP-DB Gene Name Synonym(s)=REDUCED ADH ACTIVITY%2C reduced ADH activity%2C Flap endonuclease GEN-like 1%2C Protein OsGEN-like%2C OsGEN-like;CGSNL Gene Symbol=RAD;CGSNL Gene Name=REDUCED ADH ACTIVITY;Oryzabase Gene Symbol Synonym(s)=rad%2C rad*%2C OsRAD%2C GEN1%2C OsGEN-L%2C OsGEN1;Oryzabase Gene Name Synonym(s)=reduced ADH activity%2C Flap endonuclease GEN-like 1%2C Protein OsGEN-like%2C OsGEN-like;Note=Holliday junction resolvase%2C 5'-flap endonuclease%2C Homologous recombinational DNA repair%2C Microspore development;Transcript_evidence=AK063534;ORF_evidence=Q64MA3;GO=Biological Process: DNA repair (GO:0006281),Molecular Function: DNA binding (GO:0003677),Molecular Function: catalytic activity (GO:0003824),Molecular Function: nuclease activity (GO:0004518);InterPro=XPG/Rad2 endonuclease (IPR006084),XPG N-terminal (IPR006085),PIN domain-like (IPR029060),XPG-I domain (IPR006086),5'-3' exonuclease%2C C-terminal domain (IPR020045);NIAS_FLcDNA=001-117-B09;Manual Curation=February 7%2C 2017;Literature_PMID=28049740,22247560,15792960;Oryzabase=2065;TENOR=Os09t0521900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=nucleus (GO:0005634)
Chr09	irgsp1_rep	five_prime_UTR	20389919	20390037	.	+	.	Parent=Os09t0521900-01
Chr09	irgsp1_rep	CDS	20390038	20390241	.	+	0	Parent=Os09t0521900-01
Chr09	irgsp1_rep	CDS	20390565	20390756	.	+	0	Parent=Os09t0521900-01
Chr09	irgsp1_rep	CDS	20391137	20391307	.	+	0	Parent=Os09t0521900-01
Chr09	irgsp1_rep	CDS	20391408	20391589	.	+	0	Parent=Os09t0521900-01
Chr09	irgsp1_rep	CDS	20391682	20391928	.	+	1	Parent=Os09t0521900-01
Chr09	irgsp1_rep	CDS	20392269	20392401	.	+	0	Parent=Os09t0521900-01
Chr09	irgsp1_rep	CDS	20392563	20393092	.	+	2	Parent=Os09t0521900-01
Chr09	irgsp1_rep	CDS	20393433	20393663	.	+	0	Parent=Os09t0521900-01
Chr09	irgsp1_rep	three_prime_UTR	20393664	20393906	.	+	.	Parent=Os09t0521900-01
Chr09	irgsp1_rep	mRNA	20395279	20396175	.	-	.	ID=Os09t0522000-01;Name=Os09t0522000-01;Locus_id=Os09g0522000;RAP-DB Gene Symbol Synonym(s)=OsDREB1B;RAP-DB Gene Name Synonym(s)=Dehydration-responsive element-binding protein 1B;CGSNL Gene Symbol=DREB1B;CGSNL Gene Name=DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1B;Oryzabase Gene Symbol Synonym(s)=OsDREB1B%2C ERF31%2C OsERF031%2C OsERF#031%2C OsERF31%2C AP2/EREBP#169%2C AP2/EREBP169%2C OsDREB1b%2C OsDREB1C;Oryzabase Gene Name Synonym(s)=Dehydration-responsive element-binding protein 1B%2C Protein DREB1B%2C ethylene response factor 31%2C APETALA2/ethylene-responsive element binding protein 169;Note=Transcription activator%2C "Tolerance to drought%2C high-salt and cold stresses";Transcript_evidence=AK062422 (truncated),AF300972;ORF_evidence=Q3T5N4;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-binding transcription factor activity (GO:0003700);InterPro=AP2/ERF domain superfamily (IPR036955),DNA-binding domain superfamily (IPR016177),AP2/ERF domain (IPR001471);NIAS_FLcDNA=001-102-G08 (truncated);Manual Curation=August 23%2C 2019;Literature_PMID=16284406,12609047;Oryzabase=3112;TENOR=Os09t0522000-01
Chr09	irgsp1_rep	five_prime_UTR	20396161	20396175	.	-	.	Parent=Os09t0522000-01
Chr09	irgsp1_rep	CDS	20395504	20396160	.	-	0	Parent=Os09t0522000-01
Chr09	irgsp1_rep	three_prime_UTR	20395279	20395503	.	-	.	Parent=Os09t0522000-01
Chr09	irgsp1_rep	mRNA	20399458	20400198	.	-	.	ID=Os09t0522100-00;Name=Os09t0522100-00;Locus_id=Os09g0522100;CGSNL Gene Symbol=ERF133;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 133;Oryzabase Gene Symbol Synonym(s)=OsERF#133%2C OsERF133%2C AP2/EREBP#065%2C AP2/EREBP65%2C OsDREB1H%2C DREB1H%2C OsDREB1m%2C DREB1m;Oryzabase Gene Name Synonym(s)=ethylene response factor 133%2C APETALA2/ethylene-responsive element binding protein 65%2C Dehydration-responsive element-binding protein 1H;Note=Similar to Dehydration-responsive element-binding protein 1H.;Transcript_evidence=A2Z388 (UniProt);ORF_evidence=A2Z388 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);Oryzabase=10626;TENOR=Os09t0522100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	20399458	20400198	.	-	0	Parent=Os09t0522100-00
Chr09	irgsp1_rep	mRNA	20403413	20404332	.	-	.	ID=Os09t0522200-01;Name=Os09t0522200-01;Locus_id=Os09g0522200;RAP-DB Gene Symbol Synonym(s)=OsDREB1A;RAP-DB Gene Name Synonym(s)=Dehydration-responsive element-binding protein 1A;CGSNL Gene Symbol=DREB1A;CGSNL Gene Name=DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1A;Oryzabase Gene Symbol Synonym(s)=OsDREB1A%2C Os DREB1A%2C CBF3%2C OsCBF3%2C OsDREB1A/OsCBF3%2C ERF24%2C OsERF24%2C OsERF024%2C OsERF#024%2C AP2/EREBP#114%2C AP2/EREBP114%2C OsDREBL;Oryzabase Gene Name Synonym(s)=Dehydration-responsive element-binding protein 1A%2C Protein DREB1A%2C Protein C-repeat-binding factor 3%2C ethylene response factor 24%2C APETALA2/ethylene-responsive element binding protein 114;Note=Transcription activator%2C "Tolerance to drought%2C high-salt and cold stresses";Transcript_evidence=AK105599,AK071519;ORF_evidence=Q64MA1;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-binding transcription factor activity (GO:0003700);InterPro=DNA-binding domain superfamily (IPR016177),AP2/ERF domain superfamily (IPR036955),AP2/ERF domain (IPR001471);NIAS_FLcDNA=001-200-A04,J023099L23;Manual Curation=August 23%2C 2019;Literature_PMID=16284406,12609047;Oryzabase=3111;TENOR=Os09t0522200-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	20404254	20404332	.	-	.	Parent=Os09t0522200-01
Chr09	irgsp1_rep	CDS	20403537	20404253	.	-	0	Parent=Os09t0522200-01
Chr09	irgsp1_rep	three_prime_UTR	20403413	20403536	.	-	.	Parent=Os09t0522200-01
Chr09	irgsp1_rep	mRNA	20403655	20403876	.	+	.	ID=Os09t0522500-00;Name=Os09t0522500-00;Locus_id=Os09g0522500;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os09t0522500-00
Chr09	irgsp1_rep	CDS	20403655	20403876	.	+	0	Parent=Os09t0522500-00
Chr09	irgsp1_rep	mRNA	20423141	20425017	.	+	.	ID=Os09t0522800-01;Name=Os09t0522800-01;Locus_id=Os09g0522800;Note=Protein of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK070906 (DDBJ%2C Best hit);ORF_evidence=B8BDL0 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=J023065L17;Expression=AK070906;TENOR=Os09t0522800-01;KEGG=Os09t0522800-01
Chr09	irgsp1_rep	five_prime_UTR	20423141	20423238	.	+	.	Parent=Os09t0522800-01
Chr09	irgsp1_rep	CDS	20423239	20424701	.	+	0	Parent=Os09t0522800-01
Chr09	irgsp1_rep	CDS	20424813	20424819	.	+	1	Parent=Os09t0522800-01
Chr09	irgsp1_rep	three_prime_UTR	20424820	20425017	.	+	.	Parent=Os09t0522800-01
Chr09	irgsp1_rep	mRNA	20430219	20430697	.	-	.	ID=Os09t0523050-00;Name=Os09t0523050-00;Locus_id=Os09g0523050;Note=Similar to Peroxiredoxin-5.;Transcript_evidence=tplb0013e23 (Wheat FLcDNA);ORF_evidence=B6T2Y1 (UniProt);TENOR=Os09t0523050-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	20430516	20430697	.	-	.	Parent=Os09t0523050-00
Chr09	irgsp1_rep	CDS	20430219	20430515	.	-	0	Parent=Os09t0523050-00
Chr09	irgsp1_rep	mRNA	20434450	20435065	.	-	.	ID=Os09t0523200-00;Name=Os09t0523200-00;Locus_id=Os09g0523200;Note=Hypothetical conserved gene.;Transcript_evidence=CT835865 (DDBJ%2C Best hit);ORF_evidence=Q651N8 (UniProt);TENOR=Os09t0523200-00;KEGG=Os09t0523200-00
Chr09	irgsp1_rep	five_prime_UTR	20435065	20435065	.	-	.	Parent=Os09t0523200-00
Chr09	irgsp1_rep	CDS	20434693	20435064	.	-	0	Parent=Os09t0523200-00
Chr09	irgsp1_rep	three_prime_UTR	20434450	20434692	.	-	.	Parent=Os09t0523200-00
Chr09	irgsp1_rep	mRNA	20450613	20451242	.	+	.	ID=Os09t0523700-00;Name=Os09t0523700-00;Locus_id=Os09g0523700;Note=Similar to Cold-regulated protein.;Transcript_evidence=AB097412 (DDBJ);ORF_evidence=Q9FSI8 (UniProt);TENOR=Os09t0523700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	20450613	20450710	.	+	.	Parent=Os09t0523700-00
Chr09	irgsp1_rep	CDS	20450711	20451061	.	+	0	Parent=Os09t0523700-00
Chr09	irgsp1_rep	CDS	20451143	20451217	.	+	0	Parent=Os09t0523700-00
Chr09	irgsp1_rep	three_prime_UTR	20451218	20451242	.	+	.	Parent=Os09t0523700-00
Chr09	irgsp1_rep	mRNA	20469570	20471539	.	+	.	ID=Os09t0524001-01;Name=Os09t0524001-01;Locus_id=Os09g0524001;Note=Hypothetical gene.;Transcript_evidence=AK243007 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090097H05;TENOR=Os09t0524001-01;KEGG=Os09t0524001-01
Chr09	irgsp1_rep	five_prime_UTR	20469570	20469776	.	+	.	Parent=Os09t0524001-01
Chr09	irgsp1_rep	CDS	20469777	20471492	.	+	0	Parent=Os09t0524001-01
Chr09	irgsp1_rep	three_prime_UTR	20471493	20471539	.	+	.	Parent=Os09t0524001-01
Chr09	irgsp1_rep	mRNA	20469641	20471601	.	-	.	ID=Os09t0524300-00;Name=Os09t0524300-00;Locus_id=Os09g0524300;Note=Multi antimicrobial extrusion protein MatE family protein.;Transcript_evidence=BT063261 (DDBJ);ORF_evidence=A6MD00 (UniProt);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);TENOR=Os09t0524300-00;KEGG=Os09t0524300-00
Chr09	irgsp1_rep	five_prime_UTR	20471448	20471601	.	-	.	Parent=Os09t0524300-00
Chr09	irgsp1_rep	CDS	20469822	20471447	.	-	0	Parent=Os09t0524300-00
Chr09	irgsp1_rep	three_prime_UTR	20469641	20469821	.	-	.	Parent=Os09t0524300-00
Chr09	irgsp1_rep	mRNA	20485184	20486868	.	+	.	ID=Os09t0524500-01;Name=Os09t0524500-01;Locus_id=Os09g0524500;Note=Similar to Oxidoreductase%2C short chain dehydrogenase/reductase family protein%2C expressed.;Transcript_evidence=AK119967 (DDBJ%2C Best hit);ORF_evidence=Q2QLP7 (UniProt);NIAS_FLcDNA=002-184-D11;TENOR=Os09t0524500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	20485184	20485580	.	+	.	Parent=Os09t0524500-01
Chr09	irgsp1_rep	CDS	20485581	20485853	.	+	0	Parent=Os09t0524500-01
Chr09	irgsp1_rep	three_prime_UTR	20485854	20486868	.	+	.	Parent=Os09t0524500-01
Chr09	irgsp1_rep	mRNA	20494540	20496911	.	-	.	ID=Os09t0524800-01;Name=Os09t0524800-01;Locus_id=Os09g0524800;CGSNL Gene Symbol=BAG1;CGSNL Gene Name=BCL-2-ASSOCIATED ATHANOGENE 1;Oryzabase Gene Symbol Synonym(s)=OsBAG1;Oryzabase Gene Name Synonym(s)=Bcl-2-associated athanogene 1;Note=Apoptosis regulator Bcl-2 protein%2C BAG domain containing protein.;Transcript_evidence=AK105833 (DDBJ%2C Best hit);ORF_evidence=A6MD01 (UniProt);GO=Molecular Function: chaperone binding (GO:0051087);InterPro=BAG domain (IPR003103),Ubiquitin supergroup (IPR019955);NIAS_FLcDNA=001-203-E09;Oryzabase=11550;TENOR=Os09t0524800-01
Chr09	irgsp1_rep	five_prime_UTR	20496268	20496911	.	-	.	Parent=Os09t0524800-01
Chr09	irgsp1_rep	CDS	20496012	20496267	.	-	0	Parent=Os09t0524800-01
Chr09	irgsp1_rep	CDS	20495632	20495888	.	-	2	Parent=Os09t0524800-01
Chr09	irgsp1_rep	CDS	20495407	20495553	.	-	0	Parent=Os09t0524800-01
Chr09	irgsp1_rep	CDS	20494970	20495314	.	-	0	Parent=Os09t0524800-01
Chr09	irgsp1_rep	three_prime_UTR	20494540	20494969	.	-	.	Parent=Os09t0524800-01
Chr09	irgsp1_rep	mRNA	20494540	20496638	.	-	.	ID=Os09t0524800-02;Name=Os09t0524800-02;Locus_id=Os09g0524800;CGSNL Gene Symbol=BAG1;CGSNL Gene Name=BCL-2-ASSOCIATED ATHANOGENE 1;Oryzabase Gene Symbol Synonym(s)=OsBAG1;Oryzabase Gene Name Synonym(s)=Bcl-2-associated athanogene 1;Note=Apoptosis regulator Bcl-2 protein%2C BAG domain containing protein.;Transcript_evidence=AK060485 (DDBJ%2C Best hit);ORF_evidence=A6MD01 (UniProt);GO=Molecular Function: chaperone binding (GO:0051087);InterPro=BAG domain (IPR003103),Ubiquitin supergroup (IPR019955);NIAS_FLcDNA=001-013-D08;Oryzabase=11550;TENOR=Os09t0524800-02
Chr09	irgsp1_rep	five_prime_UTR	20496268	20496638	.	-	.	Parent=Os09t0524800-02
Chr09	irgsp1_rep	CDS	20496012	20496267	.	-	0	Parent=Os09t0524800-02
Chr09	irgsp1_rep	CDS	20495632	20495888	.	-	2	Parent=Os09t0524800-02
Chr09	irgsp1_rep	CDS	20495407	20495553	.	-	0	Parent=Os09t0524800-02
Chr09	irgsp1_rep	CDS	20494970	20495314	.	-	0	Parent=Os09t0524800-02
Chr09	irgsp1_rep	three_prime_UTR	20494540	20494969	.	-	.	Parent=Os09t0524800-02
Chr09	irgsp1_rep	mRNA	20519245	20522576	.	+	.	ID=Os09t0525200-01;Name=Os09t0525200-01;Locus_id=Os09g0525200;Note=Protein of unknown function DUF947 family protein.;Transcript_evidence=AK072623 (DDBJ%2C Best hit);ORF_evidence=NP_001148967.1 (RefSeq);InterPro=Protein of unknown function DUF947 (IPR009292);NIAS_FLcDNA=J023131H02;Expression=AK072623;TENOR=Os09t0525200-01;KEGG=Os09t0525200-01
Chr09	irgsp1_rep	five_prime_UTR	20519245	20519274	.	+	.	Parent=Os09t0525200-01
Chr09	irgsp1_rep	CDS	20519275	20519382	.	+	0	Parent=Os09t0525200-01
Chr09	irgsp1_rep	CDS	20519478	20519665	.	+	0	Parent=Os09t0525200-01
Chr09	irgsp1_rep	CDS	20519748	20519814	.	+	1	Parent=Os09t0525200-01
Chr09	irgsp1_rep	CDS	20520493	20520545	.	+	0	Parent=Os09t0525200-01
Chr09	irgsp1_rep	CDS	20521054	20521108	.	+	1	Parent=Os09t0525200-01
Chr09	irgsp1_rep	CDS	20521205	20521279	.	+	0	Parent=Os09t0525200-01
Chr09	irgsp1_rep	CDS	20521888	20522005	.	+	0	Parent=Os09t0525200-01
Chr09	irgsp1_rep	CDS	20522113	20522159	.	+	2	Parent=Os09t0525200-01
Chr09	irgsp1_rep	CDS	20522246	20522347	.	+	0	Parent=Os09t0525200-01
Chr09	irgsp1_rep	three_prime_UTR	20522348	20522576	.	+	.	Parent=Os09t0525200-01
Chr09	irgsp1_rep	mRNA	20522759	20525406	.	-	.	ID=Os09t0525300-01;Name=Os09t0525300-01;Locus_id=Os09g0525300;Oryzabase Gene Symbol Synonym(s)=OsFbox500%2C Os_F0186;Oryzabase Gene Name Synonym(s)=F-box protein 500;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK066620 (DDBJ%2C Best hit);ORF_evidence=A6MD03 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013073O17;Oryzabase=17270;Expression=AK066620;TENOR=Os09t0525300-01;KEGG=Os09t0525300-01
Chr09	irgsp1_rep	five_prime_UTR	20524952	20525406	.	-	.	Parent=Os09t0525300-01
Chr09	irgsp1_rep	CDS	20524804	20524951	.	-	0	Parent=Os09t0525300-01
Chr09	irgsp1_rep	CDS	20524637	20524785	.	-	2	Parent=Os09t0525300-01
Chr09	irgsp1_rep	CDS	20523973	20524091	.	-	0	Parent=Os09t0525300-01
Chr09	irgsp1_rep	CDS	20523028	20523457	.	-	1	Parent=Os09t0525300-01
Chr09	irgsp1_rep	three_prime_UTR	20522759	20523027	.	-	.	Parent=Os09t0525300-01
Chr09	irgsp1_rep	mRNA	20528648	20532222	.	-	.	ID=Os09t0525400-01;Name=Os09t0525400-01;Locus_id=Os09g0525400;Note=Similar to RING finger protein 13 (C-RZF).;Transcript_evidence=AK066238 (DDBJ%2C Best hit),AK104112 (DDBJ%2C Best hit);ORF_evidence=A6MD04 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J013059J01,006-202-G09;Expression=AK066238;TENOR=Os09t0525400-01;KEGG=Os09t0525400-01
Chr09	irgsp1_rep	five_prime_UTR	20532103	20532222	.	-	.	Parent=Os09t0525400-01
Chr09	irgsp1_rep	five_prime_UTR	20531346	20531353	.	-	.	Parent=Os09t0525400-01
Chr09	irgsp1_rep	CDS	20531201	20531345	.	-	0	Parent=Os09t0525400-01
Chr09	irgsp1_rep	CDS	20531014	20531078	.	-	2	Parent=Os09t0525400-01
Chr09	irgsp1_rep	CDS	20530820	20530864	.	-	0	Parent=Os09t0525400-01
Chr09	irgsp1_rep	CDS	20529739	20529863	.	-	0	Parent=Os09t0525400-01
Chr09	irgsp1_rep	CDS	20529504	20529612	.	-	1	Parent=Os09t0525400-01
Chr09	irgsp1_rep	CDS	20529192	20529227	.	-	0	Parent=Os09t0525400-01
Chr09	irgsp1_rep	three_prime_UTR	20528648	20529191	.	-	.	Parent=Os09t0525400-01
Chr09	irgsp1_rep	mRNA	20534165	20534903	.	+	.	ID=Os09t0525500-01;Name=Os09t0525500-01;Locus_id=Os09g0525500;Oryzabase Gene Symbol Synonym(s)=YY1%2C OsLTPc2%2C OsLtpIII.2%2C LTP45;Oryzabase Gene Name Synonym(s)=type C non-specific lipid transfer protein 2%2C non-specific lipid transfer protein c2%2C lipid transfer protein c2%2C LIPID TRANSFER PROTEIN45;Note=YY1 protein precursor.;Transcript_evidence=AK107918 (DDBJ%2C Best hit);ORF_evidence=A6MD05 (UniProt);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=002-134-H01;Oryzabase=13164;Expression=AK107918;TENOR=Os09t0525500-01;KEGG=Os09t0525500-01
Chr09	irgsp1_rep	five_prime_UTR	20534165	20534245	.	+	.	Parent=Os09t0525500-01
Chr09	irgsp1_rep	CDS	20534246	20534528	.	+	0	Parent=Os09t0525500-01
Chr09	irgsp1_rep	CDS	20534636	20534640	.	+	2	Parent=Os09t0525500-01
Chr09	irgsp1_rep	three_prime_UTR	20534641	20534903	.	+	.	Parent=Os09t0525500-01
Chr09	irgsp1_rep	mRNA	20535359	20540243	.	-	.	ID=Os09t0525600-01;Name=Os09t0525600-01;Locus_id=Os09g0525600;Note=UBX domain containing protein.;Transcript_evidence=AK103370 (DDBJ%2C Best hit);ORF_evidence=A6MD06 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=UBX (IPR001012),UBA-like (IPR009060);NIAS_FLcDNA=J033126P18;Expression=AK103370;TENOR=Os09t0525600-01;KEGG=Os09t0525600-01
Chr09	irgsp1_rep	five_prime_UTR	20540154	20540243	.	-	.	Parent=Os09t0525600-01
Chr09	irgsp1_rep	CDS	20540070	20540153	.	-	0	Parent=Os09t0525600-01
Chr09	irgsp1_rep	CDS	20538742	20538803	.	-	0	Parent=Os09t0525600-01
Chr09	irgsp1_rep	CDS	20538097	20538634	.	-	1	Parent=Os09t0525600-01
Chr09	irgsp1_rep	CDS	20537805	20537905	.	-	0	Parent=Os09t0525600-01
Chr09	irgsp1_rep	CDS	20537479	20537719	.	-	1	Parent=Os09t0525600-01
Chr09	irgsp1_rep	CDS	20537210	20537398	.	-	0	Parent=Os09t0525600-01
Chr09	irgsp1_rep	CDS	20536974	20537138	.	-	0	Parent=Os09t0525600-01
Chr09	irgsp1_rep	CDS	20536361	20536504	.	-	0	Parent=Os09t0525600-01
Chr09	irgsp1_rep	CDS	20536226	20536295	.	-	0	Parent=Os09t0525600-01
Chr09	irgsp1_rep	CDS	20535700	20535737	.	-	2	Parent=Os09t0525600-01
Chr09	irgsp1_rep	three_prime_UTR	20535359	20535699	.	-	.	Parent=Os09t0525600-01
Chr09	irgsp1_rep	mRNA	20537105	20540201	.	-	.	ID=Os09t0525600-02;Name=Os09t0525600-02;Locus_id=Os09g0525600;Note=Similar to UBX domain-containing protein.;Transcript_evidence=AK063524 (DDBJ%2C Best hit);ORF_evidence=A6MD06 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=UBA-like (IPR009060);NIAS_FLcDNA=001-117-A03;TENOR=Os09t0525600-02
Chr09	irgsp1_rep	five_prime_UTR	20540154	20540201	.	-	.	Parent=Os09t0525600-02
Chr09	irgsp1_rep	CDS	20540070	20540153	.	-	0	Parent=Os09t0525600-02
Chr09	irgsp1_rep	CDS	20538742	20538803	.	-	0	Parent=Os09t0525600-02
Chr09	irgsp1_rep	CDS	20538097	20538634	.	-	1	Parent=Os09t0525600-02
Chr09	irgsp1_rep	CDS	20537805	20537905	.	-	0	Parent=Os09t0525600-02
Chr09	irgsp1_rep	CDS	20537479	20537719	.	-	1	Parent=Os09t0525600-02
Chr09	irgsp1_rep	CDS	20537210	20537398	.	-	0	Parent=Os09t0525600-02
Chr09	irgsp1_rep	CDS	20537105	20537138	.	-	0	Parent=Os09t0525600-02
Chr09	irgsp1_rep	mRNA	20535359	20537837	.	-	.	ID=Os09t0525600-03;Name=Os09t0525600-03;Locus_id=Os09g0525600;Note=Similar to UBX domain-containing protein.;Transcript_evidence=AK060397 (DDBJ%2C Best hit);ORF_evidence=A6MD06 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=UBX (IPR001012);NIAS_FLcDNA=001-010-B05;Expression=AK060397;TENOR=Os09t0525600-03;KEGG=Os09t0525600-03
Chr09	irgsp1_rep	five_prime_UTR	20537837	20537837	.	-	.	Parent=Os09t0525600-03
Chr09	irgsp1_rep	CDS	20537805	20537836	.	-	0	Parent=Os09t0525600-03
Chr09	irgsp1_rep	CDS	20537479	20537719	.	-	1	Parent=Os09t0525600-03
Chr09	irgsp1_rep	CDS	20537210	20537398	.	-	0	Parent=Os09t0525600-03
Chr09	irgsp1_rep	CDS	20536974	20537138	.	-	0	Parent=Os09t0525600-03
Chr09	irgsp1_rep	CDS	20536361	20536504	.	-	0	Parent=Os09t0525600-03
Chr09	irgsp1_rep	CDS	20536239	20536295	.	-	0	Parent=Os09t0525600-03
Chr09	irgsp1_rep	CDS	20535624	20535737	.	-	0	Parent=Os09t0525600-03
Chr09	irgsp1_rep	three_prime_UTR	20535359	20535623	.	-	.	Parent=Os09t0525600-03
Chr09	irgsp1_rep	mRNA	20535602	20537357	.	+	.	ID=Os09t0525650-00;Name=Os09t0525650-00;Locus_id=Os09g0525650;Note=Hypothetical protein.;Transcript_evidence=BT016877 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0525650-00
Chr09	irgsp1_rep	five_prime_UTR	20535602	20535725	.	+	.	Parent=Os09t0525650-00
Chr09	irgsp1_rep	five_prime_UTR	20536228	20536272	.	+	.	Parent=Os09t0525650-00
Chr09	irgsp1_rep	CDS	20536273	20536312	.	+	0	Parent=Os09t0525650-00
Chr09	irgsp1_rep	CDS	20536375	20536506	.	+	2	Parent=Os09t0525650-00
Chr09	irgsp1_rep	CDS	20536968	20537126	.	+	2	Parent=Os09t0525650-00
Chr09	irgsp1_rep	CDS	20537203	20537276	.	+	2	Parent=Os09t0525650-00
Chr09	irgsp1_rep	three_prime_UTR	20537277	20537357	.	+	.	Parent=Os09t0525650-00
Chr09	irgsp1_rep	mRNA	20541260	20548192	.	-	.	ID=Os09t0525700-01;Name=Os09t0525700-01;Locus_id=Os09g0525700;RAP-DB Gene Name Synonym(s)=OsGCS1-like;Note=HAP2-GCS1 domain containing protein;Transcript_evidence=AK064676 (truncated),Inferred from literature;ORF_evidence=B9G4M9;InterPro=Generative cell specific-1/HAP2 domain (IPR018928);NIAS_FLcDNA=002-115-F12 (truncated);Manual Curation=October 29%2C 2020;Literature_PMID=33110160;TENOR=Os09t0525700-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	20547974	20548192	.	-	0	Parent=Os09t0525700-01
Chr09	irgsp1_rep	CDS	20547698	20547832	.	-	0	Parent=Os09t0525700-01
Chr09	irgsp1_rep	CDS	20546530	20546618	.	-	0	Parent=Os09t0525700-01
Chr09	irgsp1_rep	CDS	20546172	20546211	.	-	1	Parent=Os09t0525700-01
Chr09	irgsp1_rep	CDS	20545868	20545925	.	-	0	Parent=Os09t0525700-01
Chr09	irgsp1_rep	CDS	20545721	20545781	.	-	2	Parent=Os09t0525700-01
Chr09	irgsp1_rep	CDS	20545120	20545198	.	-	1	Parent=Os09t0525700-01
Chr09	irgsp1_rep	CDS	20544804	20544938	.	-	0	Parent=Os09t0525700-01
Chr09	irgsp1_rep	CDS	20544531	20544728	.	-	0	Parent=Os09t0525700-01
Chr09	irgsp1_rep	CDS	20544275	20544355	.	-	0	Parent=Os09t0525700-01
Chr09	irgsp1_rep	CDS	20544105	20544205	.	-	0	Parent=Os09t0525700-01
Chr09	irgsp1_rep	CDS	20543754	20543871	.	-	1	Parent=Os09t0525700-01
Chr09	irgsp1_rep	CDS	20543441	20543473	.	-	0	Parent=Os09t0525700-01
Chr09	irgsp1_rep	CDS	20543057	20543150	.	-	0	Parent=Os09t0525700-01
Chr09	irgsp1_rep	CDS	20542866	20542954	.	-	2	Parent=Os09t0525700-01
Chr09	irgsp1_rep	CDS	20542525	20542643	.	-	0	Parent=Os09t0525700-01
Chr09	irgsp1_rep	CDS	20542282	20542337	.	-	1	Parent=Os09t0525700-01
Chr09	irgsp1_rep	CDS	20541751	20542190	.	-	2	Parent=Os09t0525700-01
Chr09	irgsp1_rep	five_prime_UTR	20541260	20541750	.	-	.	Parent=Os09t0525700-01
Chr09	irgsp1_rep	mRNA	20549870	20553043	.	-	.	ID=Os09t0525900-01;Name=Os09t0525900-01;Locus_id=Os09g0525900;Oryzabase Gene Symbol Synonym(s)=OsRhmbd16%2C RHMBD16;Oryzabase Gene Name Synonym(s)=Rhomboid 16%2C RHOMBOID 16;Note=Peptidase S54%2C rhomboid domain containing protein.;Transcript_evidence=AK071290 (DDBJ%2C Best hit),AK059988 (DDBJ%2C Best hit);ORF_evidence=A6MD08 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Cellular Component: integral to membrane (GO:0016021),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S54%2C rhomboid (IPR002610),Peptidase S54%2C rhomboid domain (IPR022764);NIAS_FLcDNA=J023087M04,006-212-H11;Oryzabase=20072;Expression=AK071290;TENOR=Os09t0525900-01;KEGG=Os09t0525900-01
Chr09	irgsp1_rep	five_prime_UTR	20552949	20553043	.	-	.	Parent=Os09t0525900-01
Chr09	irgsp1_rep	CDS	20552668	20552948	.	-	0	Parent=Os09t0525900-01
Chr09	irgsp1_rep	CDS	20551309	20551472	.	-	1	Parent=Os09t0525900-01
Chr09	irgsp1_rep	CDS	20550707	20550873	.	-	2	Parent=Os09t0525900-01
Chr09	irgsp1_rep	CDS	20550375	20550622	.	-	0	Parent=Os09t0525900-01
Chr09	irgsp1_rep	CDS	20550065	20550176	.	-	1	Parent=Os09t0525900-01
Chr09	irgsp1_rep	three_prime_UTR	20549870	20550064	.	-	.	Parent=Os09t0525900-01
Chr09	irgsp1_rep	mRNA	20558262	20561164	.	+	.	ID=Os09t0526000-00;Name=Os09t0526000-00;Locus_id=Os09g0526000;Note=Conserved hypothetical protein.;Transcript_evidence=AK358476 (DDBJ);ORF_evidence=Q5ZDJ1 (UniProt);TENOR=Os09t0526000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	20558262	20558338	.	+	.	Parent=Os09t0526000-00
Chr09	irgsp1_rep	CDS	20558339	20558593	.	+	0	Parent=Os09t0526000-00
Chr09	irgsp1_rep	three_prime_UTR	20558594	20559084	.	+	.	Parent=Os09t0526000-00
Chr09	irgsp1_rep	three_prime_UTR	20560541	20560659	.	+	.	Parent=Os09t0526000-00
Chr09	irgsp1_rep	three_prime_UTR	20560878	20561164	.	+	.	Parent=Os09t0526000-00
Chr09	irgsp1_rep	mRNA	20568029	20574897	.	-	.	ID=Os09t0526200-01;Name=Os09t0526200-01;Locus_id=Os09g0526200;CGSNL Gene Symbol=ROC6;CGSNL Gene Name=RICE OUTMOST CELL-SPECIFIC GENE 6;Oryzabase Gene Symbol Synonym(s)=Roc6(t)%2C Roc6%2C GL2-6;Oryzabase Gene Name Synonym(s)=Rice outmost cell -specific gene 6(t)%2C Rice outermost cell-specific gene-6%2C Homeobox-leucine zipper protein ROC6%2C Homeodomain transcription factor ROC6%2C HD-ZIP protein ROC6%2C Protein RICE OUTERMOST CELL-SPECIFIC 6%2C GLABRA 2-like homeobox protein 6%2C Rice ooutmost cell-specific gene6;Note=Similar to Homeobox-leucine zipper protein ROC6.;Transcript_evidence=AK071877 (DDBJ%2C Best hit);ORF_evidence=Q7Y0V7 (UniProt);NIAS_FLcDNA=J013040J18;Oryzabase=20549;TENOR=Os09t0526200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	20574326	20574897	.	-	.	Parent=Os09t0526200-01
Chr09	irgsp1_rep	CDS	20574161	20574325	.	-	0	Parent=Os09t0526200-01
Chr09	irgsp1_rep	CDS	20573966	20574060	.	-	0	Parent=Os09t0526200-01
Chr09	irgsp1_rep	CDS	20571007	20571030	.	-	1	Parent=Os09t0526200-01
Chr09	irgsp1_rep	CDS	20570856	20570862	.	-	1	Parent=Os09t0526200-01
Chr09	irgsp1_rep	three_prime_UTR	20570479	20570855	.	-	.	Parent=Os09t0526200-01
Chr09	irgsp1_rep	three_prime_UTR	20568029	20569005	.	-	.	Parent=Os09t0526200-01
Chr09	irgsp1_rep	mRNA	20573266	20573862	.	-	.	ID=Os09t0526300-00;Name=Os09t0526300-00;Locus_id=Os09g0526300;CGSNL Gene Symbol=ROC6;CGSNL Gene Name=RICE OUTMOST CELL-SPECIFIC GENE 6;Oryzabase Gene Symbol Synonym(s)=Roc6(t)%2C Roc6%2C GL2-6;Oryzabase Gene Name Synonym(s)=Rice outmost cell -specific gene 6(t)%2C Rice outermost cell-specific gene-6%2C Homeobox-leucine zipper protein ROC6%2C Homeodomain transcription factor ROC6%2C HD-ZIP protein ROC6%2C Protein RICE OUTERMOST CELL-SPECIFIC 6%2C GLABRA 2-like homeobox protein 6%2C Rice ooutmost cell-specific gene6;Note=Similar to Homeobox protein GLABRA2 (Homeobox-leucine zipper protein ATHB-10) (HD-ZIP protein ATHB-10).;Transcript_evidence=AB101649 (DDBJ%2C Best hit);ORF_evidence=Q7Y0V7 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Homeobox%2C conserved site (IPR017970);Oryzabase=20549;Expression=AB101649;TENOR=Os09t0526300-00;KEGG=Os09t0526300-00
Chr09	irgsp1_rep	CDS	20573810	20573862	.	-	0	Parent=Os09t0526300-00
Chr09	irgsp1_rep	CDS	20573597	20573714	.	-	1	Parent=Os09t0526300-00
Chr09	irgsp1_rep	CDS	20573266	20573487	.	-	0	Parent=Os09t0526300-00
Chr09	irgsp1_rep	mRNA	20587554	20588586	.	-	.	ID=Os09t0526500-00;Name=Os09t0526500-00;Locus_id=Os09g0526500;Note=C2 calcium/lipid-binding region%2C CaLB domain containing protein.;Transcript_evidence=CT841705 (DDBJ%2C Best hit);ORF_evidence=NP_001175951.1 (RefSeq);TENOR=Os09t0526500-00;KEGG=Os09t0526500-00
Chr09	irgsp1_rep	five_prime_UTR	20588429	20588586	.	-	.	Parent=Os09t0526500-00
Chr09	irgsp1_rep	CDS	20587847	20588428	.	-	0	Parent=Os09t0526500-00
Chr09	irgsp1_rep	three_prime_UTR	20587554	20587846	.	-	.	Parent=Os09t0526500-00
Chr09	irgsp1_rep	mRNA	20593602	20595143	.	-	.	ID=Os09t0526600-01;Name=Os09t0526600-01;Locus_id=Os09g0526600;CGSNL Gene Symbol=HSFB2C;CGSNL Gene Name=HEAT STRESS TRANSCRIPTION FACTOR B2C;Oryzabase Gene Symbol Synonym(s)=HSfB2c%2C OsHsfB2c%2C OsHsf-24%2C HSF24%2C OsHSF24;Oryzabase Gene Name Synonym(s)=Heat stress transcription factor B2c%2C Heat stress transcription factor B-2c%2C Heat stress transcription factor 24;Note=Similar to Isoform 2 of Heat stress transcription factor B-2c.;Transcript_evidence=AK106525 (DDBJ%2C Best hit);ORF_evidence=Q652B0-2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Heat shock factor (HSF)-type%2C DNA-binding (IPR000232),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=002-107-D11;Oryzabase=8563;Expression=AK106525;TENOR=Os09t0526600-01;KEGG=Os09t0526600-01
Chr09	irgsp1_rep	five_prime_UTR	20595023	20595143	.	-	.	Parent=Os09t0526600-01
Chr09	irgsp1_rep	CDS	20594732	20595022	.	-	0	Parent=Os09t0526600-01
Chr09	irgsp1_rep	CDS	20593658	20594611	.	-	0	Parent=Os09t0526600-01
Chr09	irgsp1_rep	three_prime_UTR	20593602	20593657	.	-	.	Parent=Os09t0526600-01
Chr09	irgsp1_rep	mRNA	20591252	20595141	.	-	.	ID=Os09t0526600-02;Name=Os09t0526600-02;Locus_id=Os09g0526600;CGSNL Gene Symbol=HSFB2C;CGSNL Gene Name=HEAT STRESS TRANSCRIPTION FACTOR B2C;Oryzabase Gene Symbol Synonym(s)=HSfB2c%2C OsHsfB2c%2C OsHsf-24%2C HSF24%2C OsHSF24;Oryzabase Gene Name Synonym(s)=Heat stress transcription factor B2c%2C Heat stress transcription factor B-2c%2C Heat stress transcription factor 24;Note=Similar to Heat shock factor protein 3 (HSF 3) (Heat shock transcription factor 3) (HSTF 3).;Transcript_evidence=AK106545 (DDBJ%2C Best hit);ORF_evidence=Q652B0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Heat shock factor (HSF)-type%2C DNA-binding (IPR000232),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=002-108-F03;Oryzabase=8563;Expression=AK106545;TENOR=Os09t0526600-02;KEGG=Os09t0526600-02
Chr09	irgsp1_rep	five_prime_UTR	20595023	20595141	.	-	.	Parent=Os09t0526600-02
Chr09	irgsp1_rep	CDS	20594732	20595022	.	-	0	Parent=Os09t0526600-02
Chr09	irgsp1_rep	CDS	20593662	20594611	.	-	0	Parent=Os09t0526600-02
Chr09	irgsp1_rep	CDS	20591524	20591647	.	-	1	Parent=Os09t0526600-02
Chr09	irgsp1_rep	three_prime_UTR	20591252	20591523	.	-	.	Parent=Os09t0526600-02
Chr09	irgsp1_rep	mRNA	20593307	20594901	.	-	.	ID=Os09t0526600-03;Name=Os09t0526600-03;Locus_id=Os09g0526600;CGSNL Gene Symbol=HSFB2C;CGSNL Gene Name=HEAT STRESS TRANSCRIPTION FACTOR B2C;Oryzabase Gene Symbol Synonym(s)=HSfB2c%2C OsHsfB2c%2C OsHsf-24%2C HSF24%2C OsHSF24;Oryzabase Gene Name Synonym(s)=Heat stress transcription factor B2c%2C Heat stress transcription factor B-2c%2C Heat stress transcription factor 24;Note=Similar to Isoform 2 of Heat stress transcription factor B-2c.;Transcript_evidence=AK105409 (DDBJ%2C Best hit);ORF_evidence=Q652B0-2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Heat shock factor (HSF)-type%2C DNA-binding (IPR000232),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=001-123-F08;Oryzabase=8563;Expression=AK105409;TENOR=Os09t0526600-03;KEGG=Os09t0526600-03
Chr09	irgsp1_rep	five_prime_UTR	20594900	20594901	.	-	.	Parent=Os09t0526600-03
Chr09	irgsp1_rep	CDS	20594732	20594899	.	-	0	Parent=Os09t0526600-03
Chr09	irgsp1_rep	CDS	20593658	20594611	.	-	0	Parent=Os09t0526600-03
Chr09	irgsp1_rep	three_prime_UTR	20593307	20593657	.	-	.	Parent=Os09t0526600-03
Chr09	irgsp1_rep	mRNA	20593763	20595047	.	+	.	ID=Os09t0526650-00;Name=Os09t0526650-00;Locus_id=Os09g0526650;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0033f11 (Wheat FLcDNA);ORF_evidence=B8AME9 (UniProt);TENOR=Os09t0526650-00
Chr09	irgsp1_rep	five_prime_UTR	20593763	20593813	.	+	.	Parent=Os09t0526650-00
Chr09	irgsp1_rep	CDS	20593814	20593885	.	+	0	Parent=Os09t0526650-00
Chr09	irgsp1_rep	CDS	20594121	20594615	.	+	0	Parent=Os09t0526650-00
Chr09	irgsp1_rep	CDS	20594736	20595047	.	+	0	Parent=Os09t0526650-00
Chr09	irgsp1_rep	mRNA	20600622	20603003	.	-	.	ID=Os09t0526700-01;Name=Os09t0526700-01;Locus_id=Os09g0526700;CGSNL Gene Symbol=UGE3;CGSNL Gene Name=UDP-GLUCOSE EPIMERASE 3;Oryzabase Gene Symbol Synonym(s)=OsUGE3%2C OsUGE4;Oryzabase Gene Name Synonym(s)=UDP-glucose epimerase 3;Note=Similar to UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase) (UDP-galactose 4-epimerase).;Transcript_evidence=AK073610 (DDBJ%2C Best hit);ORF_evidence=A6MD13 (UniProt);GO=Biological Process: galactose metabolic process (GO:0006012),Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: UDP-glucose 4-epimerase activity (GO:0003978),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),UDP-glucose 4-epimerase (IPR005886),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033049I18;Oryzabase=12412;Expression=AK073610;TENOR=Os09t0526700-01;KEGG=Os09t0526700-01 (EC:5.1.3.2)
Chr09	irgsp1_rep	five_prime_UTR	20602908	20603003	.	-	.	Parent=Os09t0526700-01
Chr09	irgsp1_rep	CDS	20602653	20602907	.	-	0	Parent=Os09t0526700-01
Chr09	irgsp1_rep	CDS	20602498	20602547	.	-	0	Parent=Os09t0526700-01
Chr09	irgsp1_rep	CDS	20602227	20602362	.	-	1	Parent=Os09t0526700-01
Chr09	irgsp1_rep	CDS	20602039	20602140	.	-	0	Parent=Os09t0526700-01
Chr09	irgsp1_rep	CDS	20601628	20601855	.	-	0	Parent=Os09t0526700-01
Chr09	irgsp1_rep	CDS	20601459	20601540	.	-	0	Parent=Os09t0526700-01
Chr09	irgsp1_rep	CDS	20601266	20601348	.	-	2	Parent=Os09t0526700-01
Chr09	irgsp1_rep	CDS	20601059	20601150	.	-	0	Parent=Os09t0526700-01
Chr09	irgsp1_rep	CDS	20600828	20600921	.	-	1	Parent=Os09t0526700-01
Chr09	irgsp1_rep	three_prime_UTR	20600622	20600827	.	-	.	Parent=Os09t0526700-01
Chr09	irgsp1_rep	mRNA	20600616	20602948	.	-	.	ID=Os09t0526700-02;Name=Os09t0526700-02;Locus_id=Os09g0526700;CGSNL Gene Symbol=UGE3;CGSNL Gene Name=UDP-GLUCOSE EPIMERASE 3;Oryzabase Gene Symbol Synonym(s)=OsUGE3%2C OsUGE4;Oryzabase Gene Name Synonym(s)=UDP-glucose epimerase 3;Note=Similar to UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase) (UDP-galactose 4-epimerase).;Transcript_evidence=AK104977 (DDBJ%2C Best hit);ORF_evidence=A6MD13 (UniProt);GO=Biological Process: galactose metabolic process (GO:0006012),Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: UDP-glucose 4-epimerase activity (GO:0003978),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),UDP-glucose 4-epimerase (IPR005886),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-124-A06;Oryzabase=12412;TENOR=Os09t0526700-02
Chr09	irgsp1_rep	five_prime_UTR	20602908	20602948	.	-	.	Parent=Os09t0526700-02
Chr09	irgsp1_rep	CDS	20602653	20602907	.	-	0	Parent=Os09t0526700-02
Chr09	irgsp1_rep	CDS	20602498	20602547	.	-	0	Parent=Os09t0526700-02
Chr09	irgsp1_rep	CDS	20602227	20602362	.	-	1	Parent=Os09t0526700-02
Chr09	irgsp1_rep	CDS	20602039	20602140	.	-	0	Parent=Os09t0526700-02
Chr09	irgsp1_rep	CDS	20601628	20601855	.	-	0	Parent=Os09t0526700-02
Chr09	irgsp1_rep	CDS	20601459	20601540	.	-	0	Parent=Os09t0526700-02
Chr09	irgsp1_rep	CDS	20601266	20601348	.	-	2	Parent=Os09t0526700-02
Chr09	irgsp1_rep	CDS	20601059	20601150	.	-	0	Parent=Os09t0526700-02
Chr09	irgsp1_rep	CDS	20600828	20600921	.	-	1	Parent=Os09t0526700-02
Chr09	irgsp1_rep	three_prime_UTR	20600616	20600827	.	-	.	Parent=Os09t0526700-02
Chr09	irgsp1_rep	mRNA	20606060	20609063	.	-	.	ID=Os09t0526800-01;Name=Os09t0526800-01;Locus_id=Os09g0526800;Note=NC domain containing protein.;Transcript_evidence=AK105121 (DDBJ%2C Best hit),AK060048 (DDBJ%2C Best hit);ORF_evidence=A6MD14 (UniProt);InterPro=NC (IPR007053);NIAS_FLcDNA=001-101-B12,006-304-H07;Expression=AK105121;TENOR=Os09t0526800-01;KEGG=Os09t0526800-01
Chr09	irgsp1_rep	five_prime_UTR	20608982	20609063	.	-	.	Parent=Os09t0526800-01
Chr09	irgsp1_rep	CDS	20608888	20608981	.	-	0	Parent=Os09t0526800-01
Chr09	irgsp1_rep	CDS	20606270	20606982	.	-	2	Parent=Os09t0526800-01
Chr09	irgsp1_rep	three_prime_UTR	20606060	20606269	.	-	.	Parent=Os09t0526800-01
Chr09	irgsp1_rep	mRNA	20605872	20609063	.	-	.	ID=Os09t0526800-02;Name=Os09t0526800-02;Locus_id=Os09g0526800;Note=Similar to NC domain-containing protein.;Transcript_evidence=AK072174 (DDBJ%2C Best hit);ORF_evidence=A6MD14 (UniProt);NIAS_FLcDNA=J013135P13;Expression=AK072174;TENOR=Os09t0526800-02;KEGG=Os09t0526800-02
Chr09	irgsp1_rep	five_prime_UTR	20608982	20609063	.	-	.	Parent=Os09t0526800-02
Chr09	irgsp1_rep	CDS	20608676	20608981	.	-	0	Parent=Os09t0526800-02
Chr09	irgsp1_rep	three_prime_UTR	20605872	20608675	.	-	.	Parent=Os09t0526800-02
Chr09	irgsp1_rep	mRNA	20613388	20625723	.	+	.	ID=Os09t0527100-01;Name=Os09t0527100-01;Locus_id=Os09g0527100;Note=Similar to RNA-binding protein.;Transcript_evidence=AK073499 (DDBJ%2C Best hit);ORF_evidence=NP_001063730.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033046E14;Expression=AK073499;TENOR=Os09t0527100-01;KEGG=Os09t0527100-01
Chr09	irgsp1_rep	five_prime_UTR	20613388	20614295	.	+	.	Parent=Os09t0527100-01
Chr09	irgsp1_rep	five_prime_UTR	20619376	20619417	.	+	.	Parent=Os09t0527100-01
Chr09	irgsp1_rep	CDS	20619418	20619453	.	+	0	Parent=Os09t0527100-01
Chr09	irgsp1_rep	CDS	20619526	20619694	.	+	0	Parent=Os09t0527100-01
Chr09	irgsp1_rep	CDS	20619821	20619882	.	+	2	Parent=Os09t0527100-01
Chr09	irgsp1_rep	CDS	20619976	20620054	.	+	0	Parent=Os09t0527100-01
Chr09	irgsp1_rep	CDS	20620489	20620592	.	+	2	Parent=Os09t0527100-01
Chr09	irgsp1_rep	three_prime_UTR	20620593	20620748	.	+	.	Parent=Os09t0527100-01
Chr09	irgsp1_rep	three_prime_UTR	20620819	20621165	.	+	.	Parent=Os09t0527100-01
Chr09	irgsp1_rep	three_prime_UTR	20621253	20621332	.	+	.	Parent=Os09t0527100-01
Chr09	irgsp1_rep	three_prime_UTR	20623183	20623362	.	+	.	Parent=Os09t0527100-01
Chr09	irgsp1_rep	three_prime_UTR	20625287	20625432	.	+	.	Parent=Os09t0527100-01
Chr09	irgsp1_rep	three_prime_UTR	20625586	20625723	.	+	.	Parent=Os09t0527100-01
Chr09	irgsp1_rep	mRNA	20613400	20625729	.	+	.	ID=Os09t0527100-02;Name=Os09t0527100-02;Locus_id=Os09g0527100;Note=Hypothetical conserved gene.;Transcript_evidence=AK064353 (DDBJ%2C Best hit);ORF_evidence=B9G4N6 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=002-108-A10;Expression=AK064353;TENOR=Os09t0527100-02;KEGG=Os09t0527100-02
Chr09	irgsp1_rep	five_prime_UTR	20613400	20614295	.	+	.	Parent=Os09t0527100-02
Chr09	irgsp1_rep	five_prime_UTR	20619376	20619445	.	+	.	Parent=Os09t0527100-02
Chr09	irgsp1_rep	CDS	20619446	20619453	.	+	0	Parent=Os09t0527100-02
Chr09	irgsp1_rep	CDS	20619588	20619694	.	+	1	Parent=Os09t0527100-02
Chr09	irgsp1_rep	CDS	20619821	20619882	.	+	2	Parent=Os09t0527100-02
Chr09	irgsp1_rep	CDS	20619976	20620054	.	+	0	Parent=Os09t0527100-02
Chr09	irgsp1_rep	CDS	20620489	20620592	.	+	2	Parent=Os09t0527100-02
Chr09	irgsp1_rep	three_prime_UTR	20620593	20620748	.	+	.	Parent=Os09t0527100-02
Chr09	irgsp1_rep	three_prime_UTR	20620819	20621165	.	+	.	Parent=Os09t0527100-02
Chr09	irgsp1_rep	three_prime_UTR	20621253	20621332	.	+	.	Parent=Os09t0527100-02
Chr09	irgsp1_rep	three_prime_UTR	20623183	20623362	.	+	.	Parent=Os09t0527100-02
Chr09	irgsp1_rep	three_prime_UTR	20625287	20625432	.	+	.	Parent=Os09t0527100-02
Chr09	irgsp1_rep	three_prime_UTR	20625586	20625729	.	+	.	Parent=Os09t0527100-02
Chr09	irgsp1_rep	mRNA	20629717	20633528	.	+	.	ID=Os09t0527500-01;Name=Os09t0527500-01;Locus_id=Os09g0527500;Note=Similar to MEG5.;Transcript_evidence=AK110546 (DDBJ%2C Best hit);ORF_evidence=B7EM90 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=002-168-B09;Expression=AK110546;TENOR=Os09t0527500-01;KEGG=Os09t0527500-01
Chr09	irgsp1_rep	five_prime_UTR	20629717	20629991	.	+	.	Parent=Os09t0527500-01
Chr09	irgsp1_rep	CDS	20629992	20630214	.	+	0	Parent=Os09t0527500-01
Chr09	irgsp1_rep	CDS	20632052	20632128	.	+	2	Parent=Os09t0527500-01
Chr09	irgsp1_rep	CDS	20632199	20632361	.	+	0	Parent=Os09t0527500-01
Chr09	irgsp1_rep	CDS	20632488	20632549	.	+	2	Parent=Os09t0527500-01
Chr09	irgsp1_rep	CDS	20632643	20632721	.	+	0	Parent=Os09t0527500-01
Chr09	irgsp1_rep	CDS	20633211	20633314	.	+	2	Parent=Os09t0527500-01
Chr09	irgsp1_rep	three_prime_UTR	20633315	20633528	.	+	.	Parent=Os09t0527500-01
Chr09	irgsp1_rep	mRNA	20637825	20639768	.	+	.	ID=Os09t0527600-01;Name=Os09t0527600-01;Locus_id=Os09g0527600;Oryzabase Gene Symbol Synonym(s)=OsRab11F2;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab11F2;Note=Similar to GTP-binding protein (Fragment).;Transcript_evidence=AK111543 (DDBJ%2C Best hit);ORF_evidence=A6MD16 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: intracellular protein transport (GO:0006886),Biological Process: nucleocytoplasmic transport (GO:0006913),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Cellular Component: membrane (GO:0016020),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Ran GTPase (IPR002041),Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C Ras type (IPR020849);NIAS_FLcDNA=J013043E12;Oryzabase=11107;Expression=AK111543;TENOR=Os09t0527600-01;KEGG=Os09t0527600-01
Chr09	irgsp1_rep	five_prime_UTR	20637825	20638026	.	+	.	Parent=Os09t0527600-01
Chr09	irgsp1_rep	CDS	20638027	20638274	.	+	0	Parent=Os09t0527600-01
Chr09	irgsp1_rep	CDS	20639130	20639601	.	+	1	Parent=Os09t0527600-01
Chr09	irgsp1_rep	three_prime_UTR	20639602	20639768	.	+	.	Parent=Os09t0527600-01
Chr09	irgsp1_rep	mRNA	20638036	20639475	.	-	.	ID=Os09t0527650-00;Name=Os09t0527650-00;Locus_id=Os09g0527650;Note=Hypothetical protein.;Transcript_evidence=BT084300 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0527650-00
Chr09	irgsp1_rep	CDS	20639128	20639475	.	-	0	Parent=Os09t0527650-00
Chr09	irgsp1_rep	CDS	20638036	20638272	.	-	0	Parent=Os09t0527650-00
Chr09	irgsp1_rep	mRNA	20641465	20643139	.	-	.	ID=Os09t0527700-01;Name=Os09t0527700-01;Locus_id=Os09g0527700;CGSNL Gene Symbol=IAA26;Oryzabase Gene Symbol Synonym(s)=OsIAA26;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 26;Note=Similar to Auxin-induced protein IAA4.;Transcript_evidence=AK111128 (DDBJ%2C Best hit);ORF_evidence=Q652A1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Aux/IAA-ARF-dimerisation (IPR011525);NIAS_FLcDNA=002-176-C09;Oryzabase=10913;Expression=AK111128;TENOR=Os09t0527700-01;KEGG=Os09t0527700-01
Chr09	irgsp1_rep	five_prime_UTR	20643078	20643139	.	-	.	Parent=Os09t0527700-01
Chr09	irgsp1_rep	CDS	20642956	20643077	.	-	0	Parent=Os09t0527700-01
Chr09	irgsp1_rep	CDS	20642729	20642862	.	-	1	Parent=Os09t0527700-01
Chr09	irgsp1_rep	CDS	20642538	20642628	.	-	2	Parent=Os09t0527700-01
Chr09	irgsp1_rep	CDS	20642318	20642393	.	-	1	Parent=Os09t0527700-01
Chr09	irgsp1_rep	three_prime_UTR	20642303	20642317	.	-	.	Parent=Os09t0527700-01
Chr09	irgsp1_rep	three_prime_UTR	20641465	20641920	.	-	.	Parent=Os09t0527700-01
Chr09	irgsp1_rep	mRNA	20646418	20649984	.	-	.	ID=Os09t0527900-01;Name=Os09t0527900-01;Locus_id=Os09g0527900;Oryzabase Gene Symbol Synonym(s)=OsBBX29%2C OsDBB1%2C BBX29%2C DBB1%2C DLN230%2C OsDLN230;Oryzabase Gene Name Synonym(s)=B-box-containing protein 29%2C DOUBLE B-BOX zinc finger gene 1%2C DOUBLE B-BOX 1%2C DLN repressor 230%2C DLN motif protein 230;Note=Similar to Hd1-like protein.;Transcript_evidence=AK122172 (DDBJ%2C Best hit);ORF_evidence=D9ZIX1 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C B-box (IPR000315);NIAS_FLcDNA=J033148H23;Oryzabase=11659;Expression=AK122172;TENOR=Os09t0527900-01;KEGG=Os09t0527900-01
Chr09	irgsp1_rep	five_prime_UTR	20649729	20649984	.	-	.	Parent=Os09t0527900-01
Chr09	irgsp1_rep	CDS	20649636	20649728	.	-	0	Parent=Os09t0527900-01
Chr09	irgsp1_rep	CDS	20647495	20647591	.	-	0	Parent=Os09t0527900-01
Chr09	irgsp1_rep	CDS	20647296	20647411	.	-	2	Parent=Os09t0527900-01
Chr09	irgsp1_rep	CDS	20646971	20647213	.	-	0	Parent=Os09t0527900-01
Chr09	irgsp1_rep	CDS	20646774	20646860	.	-	0	Parent=Os09t0527900-01
Chr09	irgsp1_rep	three_prime_UTR	20646418	20646773	.	-	.	Parent=Os09t0527900-01
Chr09	irgsp1_rep	mRNA	20646416	20647107	.	-	.	ID=Os09t0527900-02;Name=Os09t0527900-02;Locus_id=Os09g0527900;Oryzabase Gene Symbol Synonym(s)=OsBBX29%2C OsDBB1%2C BBX29%2C DBB1%2C DLN230%2C OsDLN230;Oryzabase Gene Name Synonym(s)=B-box-containing protein 29%2C DOUBLE B-BOX zinc finger gene 1%2C DOUBLE B-BOX 1%2C DLN repressor 230%2C DLN motif protein 230;Note=Hypothetical conserved gene.;Transcript_evidence=AK058794 (DDBJ%2C Best hit);ORF_evidence=B8BDX0 (UniProt);NIAS_FLcDNA=001-002-H04;Oryzabase=11659;Expression=AK058794;TENOR=Os09t0527900-02;KEGG=Os09t0527900-02
Chr09	irgsp1_rep	five_prime_UTR	20647106	20647107	.	-	.	Parent=Os09t0527900-02
Chr09	irgsp1_rep	CDS	20646971	20647105	.	-	0	Parent=Os09t0527900-02
Chr09	irgsp1_rep	CDS	20646774	20646860	.	-	0	Parent=Os09t0527900-02
Chr09	irgsp1_rep	three_prime_UTR	20646416	20646773	.	-	.	Parent=Os09t0527900-02
Chr09	irgsp1_rep	mRNA	20654707	20659146	.	+	.	ID=Os09t0528000-01;Name=Os09t0528000-01;Locus_id=Os09g0528000;Note=Kinesin%2C motor region domain containing protein.;Transcript_evidence=AK100918 (DDBJ%2C Best hit);ORF_evidence=B9G4P1 (UniProt);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752),Protein of unknown function DUF3490 (IPR021881);NIAS_FLcDNA=J023133F16;Expression=AK100918;TENOR=Os09t0528000-01;KEGG=Os09t0528000-01
Chr09	irgsp1_rep	five_prime_UTR	20654707	20654891	.	+	.	Parent=Os09t0528000-01
Chr09	irgsp1_rep	five_prime_UTR	20655164	20655181	.	+	.	Parent=Os09t0528000-01
Chr09	irgsp1_rep	CDS	20655182	20655356	.	+	0	Parent=Os09t0528000-01
Chr09	irgsp1_rep	CDS	20655431	20655520	.	+	2	Parent=Os09t0528000-01
Chr09	irgsp1_rep	CDS	20655633	20655733	.	+	2	Parent=Os09t0528000-01
Chr09	irgsp1_rep	CDS	20655819	20655932	.	+	0	Parent=Os09t0528000-01
Chr09	irgsp1_rep	CDS	20656026	20656107	.	+	0	Parent=Os09t0528000-01
Chr09	irgsp1_rep	CDS	20656222	20656289	.	+	2	Parent=Os09t0528000-01
Chr09	irgsp1_rep	CDS	20656377	20656442	.	+	0	Parent=Os09t0528000-01
Chr09	irgsp1_rep	CDS	20656526	20656650	.	+	0	Parent=Os09t0528000-01
Chr09	irgsp1_rep	CDS	20656777	20657110	.	+	1	Parent=Os09t0528000-01
Chr09	irgsp1_rep	CDS	20657234	20657350	.	+	0	Parent=Os09t0528000-01
Chr09	irgsp1_rep	CDS	20657451	20658206	.	+	0	Parent=Os09t0528000-01
Chr09	irgsp1_rep	CDS	20658337	20658587	.	+	0	Parent=Os09t0528000-01
Chr09	irgsp1_rep	CDS	20658671	20658980	.	+	1	Parent=Os09t0528000-01
Chr09	irgsp1_rep	three_prime_UTR	20658981	20659146	.	+	.	Parent=Os09t0528000-01
Chr09	irgsp1_rep	mRNA	20654810	20659157	.	+	.	ID=Os09t0528000-02;Name=Os09t0528000-02;Locus_id=Os09g0528000;Note=Kinesin%2C motor region domain containing protein.;Transcript_evidence=AK072633 (DDBJ%2C Best hit);ORF_evidence=B9G4P1 (UniProt);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752),Protein of unknown function DUF3490 (IPR021881);NIAS_FLcDNA=J023134L05;Expression=AK072633;TENOR=Os09t0528000-02;KEGG=Os09t0528000-02
Chr09	irgsp1_rep	five_prime_UTR	20654810	20654891	.	+	.	Parent=Os09t0528000-02
Chr09	irgsp1_rep	five_prime_UTR	20655164	20655181	.	+	.	Parent=Os09t0528000-02
Chr09	irgsp1_rep	CDS	20655182	20655356	.	+	0	Parent=Os09t0528000-02
Chr09	irgsp1_rep	CDS	20655431	20655520	.	+	2	Parent=Os09t0528000-02
Chr09	irgsp1_rep	CDS	20655633	20655733	.	+	2	Parent=Os09t0528000-02
Chr09	irgsp1_rep	CDS	20655819	20655932	.	+	0	Parent=Os09t0528000-02
Chr09	irgsp1_rep	CDS	20656026	20656107	.	+	0	Parent=Os09t0528000-02
Chr09	irgsp1_rep	CDS	20656222	20656289	.	+	2	Parent=Os09t0528000-02
Chr09	irgsp1_rep	CDS	20656377	20656442	.	+	0	Parent=Os09t0528000-02
Chr09	irgsp1_rep	CDS	20656526	20656650	.	+	0	Parent=Os09t0528000-02
Chr09	irgsp1_rep	CDS	20656777	20657110	.	+	1	Parent=Os09t0528000-02
Chr09	irgsp1_rep	CDS	20657234	20657350	.	+	0	Parent=Os09t0528000-02
Chr09	irgsp1_rep	CDS	20657451	20658206	.	+	0	Parent=Os09t0528000-02
Chr09	irgsp1_rep	CDS	20658337	20658587	.	+	0	Parent=Os09t0528000-02
Chr09	irgsp1_rep	CDS	20658671	20658980	.	+	1	Parent=Os09t0528000-02
Chr09	irgsp1_rep	three_prime_UTR	20658981	20659157	.	+	.	Parent=Os09t0528000-02
Chr09	irgsp1_rep	mRNA	20657324	20659183	.	+	.	ID=Os09t0528000-03;Name=Os09t0528000-03;Locus_id=Os09g0528000;Note=Hypothetical conserved gene.;Transcript_evidence=AK060588 (DDBJ%2C Best hit);ORF_evidence=B9G4P1 (UniProt);InterPro=Protein of unknown function DUF3490 (IPR021881);NIAS_FLcDNA=001-024-B11;Expression=AK060588;TENOR=Os09t0528000-03;KEGG=Os09t0528000-03
Chr09	irgsp1_rep	CDS	20657324	20657350	.	+	0	Parent=Os09t0528000-03
Chr09	irgsp1_rep	CDS	20657451	20658206	.	+	0	Parent=Os09t0528000-03
Chr09	irgsp1_rep	CDS	20658337	20658587	.	+	0	Parent=Os09t0528000-03
Chr09	irgsp1_rep	CDS	20658671	20658980	.	+	1	Parent=Os09t0528000-03
Chr09	irgsp1_rep	three_prime_UTR	20658981	20659183	.	+	.	Parent=Os09t0528000-03
Chr09	irgsp1_rep	mRNA	20655158	20658926	.	-	.	ID=Os09t0528050-00;Name=Os09t0528050-00;Locus_id=Os09g0528050;Note=Hypothetical protein.;Transcript_evidence=tplb0030a08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0528050-00
Chr09	irgsp1_rep	five_prime_UTR	20658598	20658926	.	-	.	Parent=Os09t0528050-00
Chr09	irgsp1_rep	five_prime_UTR	20658322	20658546	.	-	.	Parent=Os09t0528050-00
Chr09	irgsp1_rep	five_prime_UTR	20658137	20658230	.	-	.	Parent=Os09t0528050-00
Chr09	irgsp1_rep	CDS	20657756	20658136	.	-	0	Parent=Os09t0528050-00
Chr09	irgsp1_rep	three_prime_UTR	20657244	20657755	.	-	.	Parent=Os09t0528050-00
Chr09	irgsp1_rep	three_prime_UTR	20656762	20657120	.	-	.	Parent=Os09t0528050-00
Chr09	irgsp1_rep	three_prime_UTR	20656458	20656645	.	-	.	Parent=Os09t0528050-00
Chr09	irgsp1_rep	three_prime_UTR	20656146	20656280	.	-	.	Parent=Os09t0528050-00
Chr09	irgsp1_rep	three_prime_UTR	20655802	20655937	.	-	.	Parent=Os09t0528050-00
Chr09	irgsp1_rep	three_prime_UTR	20655623	20655714	.	-	.	Parent=Os09t0528050-00
Chr09	irgsp1_rep	three_prime_UTR	20655411	20655504	.	-	.	Parent=Os09t0528050-00
Chr09	irgsp1_rep	three_prime_UTR	20655158	20655342	.	-	.	Parent=Os09t0528050-00
Chr09	irgsp1_rep	mRNA	20659712	20660287	.	+	.	ID=Os09t0528100-01;Name=Os09t0528100-01;Locus_id=Os09g0528100;Note=Similar to 30S ribosomal protein S31%2C chloroplast (Fragment).;Transcript_evidence=AK059096 (DDBJ%2C Best hit);ORF_evidence=B6UIF3 (UniProt);NIAS_FLcDNA=001-022-C05;Expression=AK059096;TENOR=Os09t0528100-01;KEGG=Os09t0528100-01
Chr09	irgsp1_rep	five_prime_UTR	20659712	20659789	.	+	.	Parent=Os09t0528100-01
Chr09	irgsp1_rep	CDS	20659790	20660038	.	+	0	Parent=Os09t0528100-01
Chr09	irgsp1_rep	three_prime_UTR	20660039	20660287	.	+	.	Parent=Os09t0528100-01
Chr09	irgsp1_rep	mRNA	20671994	20673267	.	+	.	ID=Os09t0528200-01;Name=Os09t0528200-01;Locus_id=Os09g0528200;CGSNL Gene Symbol=HOX6;CGSNL Gene Name=HOMEOBOX GENE 6;Oryzabase Gene Symbol Synonym(s)=Oshox6%2C OsHox6;Oryzabase Gene Name Synonym(s)=rice homeobox gene 6%2C Homeobox-leucine zipper protein HOX6%2C Homeodomain transcription factor HOX6%2C HD-ZIP protein HOX6;Note=Similar to Homeobox-leucine zipper protein HOX6.;Transcript_evidence=AK103160 (DDBJ%2C Best hit);ORF_evidence=Q651Z5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: transcription regulatory region sequence-specific DNA binding (GO:0000976),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Helix-turn-helix motif%2C lambda-like repressor (IPR000047),Homeobox (IPR001356),Leucine zipper%2C homeobox-associated (IPR003106),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Homeobox%2C conserved site (IPR017970);NIAS_FLcDNA=J033121C04;Oryzabase=6157;Expression=AK103160;TENOR=Os09t0528200-01;KEGG=Os09t0528200-01
Chr09	irgsp1_rep	five_prime_UTR	20671994	20672064	.	+	.	Parent=Os09t0528200-01
Chr09	irgsp1_rep	CDS	20672065	20672414	.	+	0	Parent=Os09t0528200-01
Chr09	irgsp1_rep	CDS	20672509	20672908	.	+	1	Parent=Os09t0528200-01
Chr09	irgsp1_rep	three_prime_UTR	20672909	20673267	.	+	.	Parent=Os09t0528200-01
Chr09	irgsp1_rep	mRNA	20672036	20673280	.	+	.	ID=Os09t0528200-02;Name=Os09t0528200-02;Locus_id=Os09g0528200;CGSNL Gene Symbol=HOX6;CGSNL Gene Name=HOMEOBOX GENE 6;Oryzabase Gene Symbol Synonym(s)=Oshox6%2C OsHox6;Oryzabase Gene Name Synonym(s)=rice homeobox gene 6%2C Homeobox-leucine zipper protein HOX6%2C Homeodomain transcription factor HOX6%2C HD-ZIP protein HOX6;Note=Similar to Homeobox-leucine zipper protein HOX6.;Transcript_evidence=AK059755 (DDBJ%2C Best hit);ORF_evidence=Q651Z5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: transcription regulatory region sequence-specific DNA binding (GO:0000976),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Helix-turn-helix motif%2C lambda-like repressor (IPR000047),Homeobox (IPR001356),Leucine zipper%2C homeobox-associated (IPR003106),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Homeobox%2C conserved site (IPR017970);NIAS_FLcDNA=006-203-C03;Oryzabase=6157;Expression=AK059755;TENOR=Os09t0528200-02;KEGG=Os09t0528200-02
Chr09	irgsp1_rep	five_prime_UTR	20672036	20672064	.	+	.	Parent=Os09t0528200-02
Chr09	irgsp1_rep	CDS	20672065	20672414	.	+	0	Parent=Os09t0528200-02
Chr09	irgsp1_rep	CDS	20672509	20672908	.	+	1	Parent=Os09t0528200-02
Chr09	irgsp1_rep	three_prime_UTR	20672909	20673280	.	+	.	Parent=Os09t0528200-02
Chr09	irgsp1_rep	mRNA	20673834	20678640	.	-	.	ID=Os09t0528300-01;Name=Os09t0528300-01;Locus_id=Os09g0528300;Oryzabase Gene Symbol Synonym(s)=OsMED10%2C MED10%2C OsMed10_1%2C Med10_1;Oryzabase Gene Name Synonym(s)=Mediator complex protein OsMED10%2C Mediator 10_1;Note=Similar to RNA polymerase II mediator complex protein-related.;Transcript_evidence=AK121125 (DDBJ%2C Best hit);ORF_evidence=NP_199006.1 (RefSeq);GO=Biological Process: regulation of transcription from RNA polymerase II promoter (GO:0006357),Cellular Component: mediator complex (GO:0016592),Molecular Function: RNA polymerase II transcription cofactor activity (GO:0001104);InterPro=Mediator complex%2C subunit Med10 (IPR019145);NIAS_FLcDNA=J023075A07;Oryzabase=18696;Expression=AK121125;TENOR=Os09t0528300-01;KEGG=Os09t0528300-01
Chr09	irgsp1_rep	five_prime_UTR	20678586	20678640	.	-	.	Parent=Os09t0528300-01
Chr09	irgsp1_rep	CDS	20678359	20678585	.	-	0	Parent=Os09t0528300-01
Chr09	irgsp1_rep	CDS	20678177	20678257	.	-	1	Parent=Os09t0528300-01
Chr09	irgsp1_rep	CDS	20677975	20678077	.	-	1	Parent=Os09t0528300-01
Chr09	irgsp1_rep	CDS	20676683	20676772	.	-	0	Parent=Os09t0528300-01
Chr09	irgsp1_rep	CDS	20676402	20676473	.	-	0	Parent=Os09t0528300-01
Chr09	irgsp1_rep	three_prime_UTR	20674733	20676401	.	-	.	Parent=Os09t0528300-01
Chr09	irgsp1_rep	three_prime_UTR	20673834	20674643	.	-	.	Parent=Os09t0528300-01
Chr09	irgsp1_rep	mRNA	20691368	20693123	.	-	.	ID=Os09t0528500-00;Name=Os09t0528500-00;Locus_id=Os09g0528500;Note=Hypothetical protein.;Transcript_evidence=tplb0044m18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0528500-00
Chr09	irgsp1_rep	five_prime_UTR	20692488	20693123	.	-	.	Parent=Os09t0528500-00
Chr09	irgsp1_rep	five_prime_UTR	20692305	20692403	.	-	.	Parent=Os09t0528500-00
Chr09	irgsp1_rep	CDS	20691368	20692304	.	-	0	Parent=Os09t0528500-00
Chr09	irgsp1_rep	mRNA	20691369	20693116	.	+	.	ID=Os09t0528700-00;Name=Os09t0528700-00;Locus_id=Os09g0528700;CGSNL Gene Symbol=CYP76M7%2C CYP78C6;CGSNL Gene Name=CYTOCHROME P450 76M7%2C CYTOCHROME P450 78C6;Oryzabase Gene Symbol Synonym(s)=OsCYP76M7%2C OsCYP78C6;Oryzabase Gene Name Synonym(s)=CytoChrome P450 76M7%2C CytoChrome P450 78C6;Note=Similar to CytoChrome p450 (CYP78A9).;Transcript_evidence=ab initio prediction;ORF_evidence=B6ST44 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);Oryzabase=21834,21835;TENOR=Os09t0528700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	20691369	20692409	.	+	0	Parent=Os09t0528700-00
Chr09	irgsp1_rep	CDS	20692496	20693116	.	+	0	Parent=Os09t0528700-00
Chr09	irgsp1_rep	mRNA	20695258	20695805	.	-	.	ID=Os09t0528750-00;Name=Os09t0528750-00;Locus_id=Os09g0528750;Note=Non-protein coding transcript.;Transcript_evidence=CT835864 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os09t0528750-00
Chr09	irgsp1_rep	exon	20695258	20695805	.	-	.	Parent=Os09t0528750-00
Chr09	irgsp1_rep	mRNA	20716413	20721081	.	-	.	ID=Os09t0528800-01;Name=Os09t0528800-01;Locus_id=Os09g0528800;Note=RabGAP/TBC domain containing protein.;Transcript_evidence=AK070219 (DDBJ%2C Best hit);ORF_evidence=XP_002877668.1 (RefSeq);GO=Biological Process: regulation of Rab GTPase activity (GO:0032313),Cellular Component: intracellular (GO:0005622),Molecular Function: Rab GTPase activator activity (GO:0005097);InterPro=Rab-GAP/TBC domain (IPR000195);NIAS_FLcDNA=J023043K12;Expression=AK070219;TENOR=Os09t0528800-01;KEGG=Os09t0528800-01
Chr09	irgsp1_rep	five_prime_UTR	20721070	20721081	.	-	.	Parent=Os09t0528800-01
Chr09	irgsp1_rep	CDS	20720804	20721069	.	-	0	Parent=Os09t0528800-01
Chr09	irgsp1_rep	CDS	20719058	20719193	.	-	1	Parent=Os09t0528800-01
Chr09	irgsp1_rep	CDS	20718833	20718882	.	-	0	Parent=Os09t0528800-01
Chr09	irgsp1_rep	CDS	20718251	20718304	.	-	1	Parent=Os09t0528800-01
Chr09	irgsp1_rep	CDS	20716756	20717989	.	-	1	Parent=Os09t0528800-01
Chr09	irgsp1_rep	three_prime_UTR	20716413	20716755	.	-	.	Parent=Os09t0528800-01
Chr09	irgsp1_rep	mRNA	20724959	20727968	.	-	.	ID=Os09t0529100-01;Name=Os09t0529100-01;Locus_id=Os09g0529100;Oryzabase Gene Name Synonym(s)=6-phosphogluconolactonase;Note=6-phosphogluconolactonase domain containing protein.;Transcript_evidence=AK069696 (DDBJ%2C Best hit);ORF_evidence=A6MD23 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: pentose-phosphate shunt (GO:0006098),Molecular Function: 6-phosphogluconolactonase activity (GO:0017057);InterPro=6-phosphogluconolactonase%2C DevB-type (IPR005900),Glucosamine/galactosamine-6-phosphate isomerase (IPR006148);NIAS_FLcDNA=J023028P13;Oryzabase=16097;Expression=AK069696;TENOR=Os09t0529100-01;KEGG=Os09t0529100-01 (EC:3.1.1.31)
Chr09	irgsp1_rep	five_prime_UTR	20727809	20727968	.	-	.	Parent=Os09t0529100-01
Chr09	irgsp1_rep	CDS	20727615	20727808	.	-	0	Parent=Os09t0529100-01
Chr09	irgsp1_rep	CDS	20727362	20727497	.	-	1	Parent=Os09t0529100-01
Chr09	irgsp1_rep	CDS	20725222	20725701	.	-	0	Parent=Os09t0529100-01
Chr09	irgsp1_rep	three_prime_UTR	20724959	20725221	.	-	.	Parent=Os09t0529100-01
Chr09	irgsp1_rep	mRNA	20731589	20734724	.	-	.	ID=Os09t0529300-01;Name=Os09t0529300-01;Locus_id=Os09g0529300;CGSNL Gene Symbol=SPK;CGSNL Gene Name=SPREADING STUB;Oryzabase Gene Symbol Synonym(s)=Spk(t)%2C Spk(t)*)%2C Spk%2C OsTAC1%2C TAC1%2C qTAC9;Oryzabase Gene Name Synonym(s)=Spreading stub%2C Tiller angle control 1;Note=Similar to Leaf angle-associated protein.;Transcript_evidence=AK066042 (DDBJ%2C Best hit);ORF_evidence=C4IZI7 (UniProt);NIAS_FLcDNA=J013048L17;Oryzabase=862;Expression=AK066042;TENOR=Os09t0529300-01;KEGG=Os09t0529300-01
Chr09	irgsp1_rep	five_prime_UTR	20734669	20734724	.	-	.	Parent=Os09t0529300-01
Chr09	irgsp1_rep	five_prime_UTR	20734468	20734501	.	-	.	Parent=Os09t0529300-01
Chr09	irgsp1_rep	CDS	20733547	20734467	.	-	0	Parent=Os09t0529300-01
Chr09	irgsp1_rep	three_prime_UTR	20731589	20733546	.	-	.	Parent=Os09t0529300-01
Chr09	irgsp1_rep	mRNA	20731589	20734728	.	-	.	ID=Os09t0529300-02;Name=Os09t0529300-02;Locus_id=Os09g0529300;RAP-DB Gene Symbol Synonym(s)=SPK%2C Spk(t)%2C Spk%2C OsTAC1%2C TAC1%2C qTAC9;RAP-DB Gene Name Synonym(s)=SPREADING STUB%2C Spreading stub%2C Tiller angle control 1%2C QTL controlling tiller angle on Chromosome 9;CGSNL Gene Symbol=SPK;CGSNL Gene Name=SPREADING STUB;Oryzabase Gene Symbol Synonym(s)=Spk(t)%2C Spk(t)*)%2C Spk%2C OsTAC1%2C TAC1%2C qTAC9;Oryzabase Gene Name Synonym(s)=Spreading stub%2C Tiller angle control 1;Note=Regulation of tiller angle;Transcript_evidence=Inferred from literature;ORF_evidence=Q0J059;Manual Curation=July 5%2C 2016;Literature_PMID=28542427,17908158,DOI:10.1111/j.1439-0523.2009.01639.x;Oryzabase=862
Chr09	irgsp1_rep	five_prime_UTR	20734681	20734728	.	-	.	Parent=Os09t0529300-02
Chr09	irgsp1_rep	CDS	20734669	20734680	.	-	0	Parent=Os09t0529300-02
Chr09	irgsp1_rep	CDS	20734435	20734501	.	-	0	Parent=Os09t0529300-02
Chr09	irgsp1_rep	CDS	20733715	20734331	.	-	2	Parent=Os09t0529300-02
Chr09	irgsp1_rep	CDS	20733401	20733484	.	-	0	Parent=Os09t0529300-02
Chr09	irgsp1_rep	three_prime_UTR	20731589	20733400	.	-	.	Parent=Os09t0529300-02
Chr09	irgsp1_rep	mRNA	20733362	20739720	.	+	.	ID=Os09t0529325-00;Name=Os09t0529325-00;Locus_id=Os09g0529325;Note=Hypothetical protein.;Transcript_evidence=tplb0025a07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0529325-00
Chr09	irgsp1_rep	five_prime_UTR	20733362	20733482	.	+	.	Parent=Os09t0529325-00
Chr09	irgsp1_rep	five_prime_UTR	20733713	20733952	.	+	.	Parent=Os09t0529325-00
Chr09	irgsp1_rep	CDS	20733953	20734311	.	+	0	Parent=Os09t0529325-00
Chr09	irgsp1_rep	CDS	20734417	20734507	.	+	1	Parent=Os09t0529325-00
Chr09	irgsp1_rep	CDS	20734675	20734725	.	+	0	Parent=Os09t0529325-00
Chr09	irgsp1_rep	three_prime_UTR	20734726	20734861	.	+	.	Parent=Os09t0529325-00
Chr09	irgsp1_rep	three_prime_UTR	20736212	20737392	.	+	.	Parent=Os09t0529325-00
Chr09	irgsp1_rep	three_prime_UTR	20737480	20737823	.	+	.	Parent=Os09t0529325-00
Chr09	irgsp1_rep	three_prime_UTR	20739248	20739720	.	+	.	Parent=Os09t0529325-00
Chr09	irgsp1_rep	mRNA	20737101	20739478	.	-	.	ID=Os09t0529350-01;Name=Os09t0529350-01;Locus_id=Os09g0529350;Note=Hypothetical conserved gene.;Transcript_evidence=AK289128 (DDBJ%2C Best hit);ORF_evidence=Q69NG3 (UniProt);NIAS_FLcDNA=J090098C05;TENOR=Os09t0529350-01;KEGG=Os09t0529350-01
Chr09	irgsp1_rep	five_prime_UTR	20737883	20739478	.	-	.	Parent=Os09t0529350-01
Chr09	irgsp1_rep	CDS	20737468	20737882	.	-	0	Parent=Os09t0529350-01
Chr09	irgsp1_rep	CDS	20737197	20737378	.	-	2	Parent=Os09t0529350-01
Chr09	irgsp1_rep	three_prime_UTR	20737101	20737196	.	-	.	Parent=Os09t0529350-01
Chr09	irgsp1_rep	mRNA	20741476	20742876	.	-	.	ID=Os09t0529400-01;Name=Os09t0529400-01;Locus_id=Os09g0529400;Note=Protein of unknown function DUF295 family protein.;Transcript_evidence=AK069350 (DDBJ%2C Best hit);ORF_evidence=Q2QZU7 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174);NIAS_FLcDNA=J023014M09;Expression=AK069350;TENOR=Os09t0529400-01;KEGG=Os09t0529400-01
Chr09	irgsp1_rep	five_prime_UTR	20742775	20742876	.	-	.	Parent=Os09t0529400-01
Chr09	irgsp1_rep	CDS	20741659	20742774	.	-	0	Parent=Os09t0529400-01
Chr09	irgsp1_rep	three_prime_UTR	20741476	20741658	.	-	.	Parent=Os09t0529400-01
Chr09	irgsp1_rep	mRNA	20744838	20748509	.	-	.	ID=Os09t0529700-01;Name=Os09t0529700-01;Locus_id=Os09g0529700;RAP-DB Gene Symbol Synonym(s)=OsVPS22;Oryzabase Gene Symbol Synonym(s)=OsVPS22;Oryzabase Gene Name Synonym(s)=VPS22 component of ESCRT-II complex%2C ESCRT-II complex VPS22 component;Note=Homolog of the Vps22 subunit of the yeast ESCRT-II complex%2C Seedling viability and grain filling;Transcript_evidence=AK243545;ORF_evidence=A0A0P0XQU3;GO=Biological Process: multivesicular body sorting pathway (GO:0071985),Cellular Component: ESCRT II complex (GO:0000814);InterPro=Winged helix DNA-binding domain superfamily (IPR036390),Winged helix-like DNA-binding domain superfamily (IPR036388),Snf8/Vps36 family (IPR040608),ESCRT-2 complex%2C Snf8 (IPR016689);NIAS_FLcDNA=J100079C15;Manual Curation=August 3%2C 2020;Literature_PMID=23275199;Oryzabase=12257;TENOR=Os09t0529700-01;KEGG=Os09t0529700-01
Chr09	irgsp1_rep	five_prime_UTR	20747882	20748509	.	-	.	Parent=Os09t0529700-01
Chr09	irgsp1_rep	five_prime_UTR	20747330	20747348	.	-	.	Parent=Os09t0529700-01
Chr09	irgsp1_rep	CDS	20747279	20747329	.	-	0	Parent=Os09t0529700-01
Chr09	irgsp1_rep	CDS	20747078	20747188	.	-	0	Parent=Os09t0529700-01
Chr09	irgsp1_rep	CDS	20746387	20746522	.	-	0	Parent=Os09t0529700-01
Chr09	irgsp1_rep	CDS	20746127	20746282	.	-	2	Parent=Os09t0529700-01
Chr09	irgsp1_rep	CDS	20745856	20745962	.	-	2	Parent=Os09t0529700-01
Chr09	irgsp1_rep	CDS	20745476	20745565	.	-	0	Parent=Os09t0529700-01
Chr09	irgsp1_rep	CDS	20745079	20745186	.	-	0	Parent=Os09t0529700-01
Chr09	irgsp1_rep	three_prime_UTR	20744838	20745078	.	-	.	Parent=Os09t0529700-01
Chr09	irgsp1_rep	mRNA	20750124	20751462	.	+	.	ID=Os09t0529900-01;Name=Os09t0529900-01;Locus_id=Os09g0529900;Oryzabase Gene Name Synonym(s)=pyruvate/phosphoenolpyruvate kinase;Note=Pyruvate/Phosphoenolpyruvate kinase%2C catalytic core domain containing protein.;Transcript_evidence=AK121655 (DDBJ%2C Best hit);ORF_evidence=NP_192813.1 (RefSeq);GO=Biological Process: cellular aromatic compound metabolic process (GO:0006725),Molecular Function: catalytic activity (GO:0003824),Molecular Function: carbon-carbon lyase activity (GO:0016830);InterPro=Aldehyde-lyase domain (IPR005000),Pyruvate/Phosphoenolpyruvate kinase (IPR015813);NIAS_FLcDNA=J033061N09;Oryzabase=12463;Expression=AK121655;TENOR=Os09t0529900-01;KEGG=Os09t0529900-01
Chr09	irgsp1_rep	five_prime_UTR	20750124	20750185	.	+	.	Parent=Os09t0529900-01
Chr09	irgsp1_rep	CDS	20750186	20751232	.	+	0	Parent=Os09t0529900-01
Chr09	irgsp1_rep	three_prime_UTR	20751233	20751462	.	+	.	Parent=Os09t0529900-01
Chr09	irgsp1_rep	mRNA	20751729	20754516	.	+	.	ID=Os09t0530000-01;Name=Os09t0530000-01;Locus_id=Os09g0530000;CGSNL Gene Symbol=STR4;CGSNL Gene Name=SULFURTRANSFERASE 4;Oryzabase Gene Symbol Synonym(s)=OsStr4;Oryzabase Gene Name Synonym(s)=Sulfurtransferase 4;Note=Rhodanese-like domain containing protein.;Transcript_evidence=AK067495 (DDBJ%2C Best hit);ORF_evidence=NP_001149014.1 (RefSeq);InterPro=Rhodanese-like (IPR001763);NIAS_FLcDNA=J013111B10;Oryzabase=12054;Expression=AK067495;TENOR=Os09t0530000-01;KEGG=Os09t0530000-01
Chr09	irgsp1_rep	five_prime_UTR	20751729	20751864	.	+	.	Parent=Os09t0530000-01
Chr09	irgsp1_rep	CDS	20751865	20752054	.	+	0	Parent=Os09t0530000-01
Chr09	irgsp1_rep	CDS	20752154	20752200	.	+	2	Parent=Os09t0530000-01
Chr09	irgsp1_rep	CDS	20752483	20752575	.	+	0	Parent=Os09t0530000-01
Chr09	irgsp1_rep	CDS	20752964	20753102	.	+	0	Parent=Os09t0530000-01
Chr09	irgsp1_rep	CDS	20753421	20753523	.	+	2	Parent=Os09t0530000-01
Chr09	irgsp1_rep	CDS	20754142	20754259	.	+	1	Parent=Os09t0530000-01
Chr09	irgsp1_rep	three_prime_UTR	20754260	20754516	.	+	.	Parent=Os09t0530000-01
Chr09	irgsp1_rep	mRNA	20751807	20754647	.	+	.	ID=Os09t0530000-02;Name=Os09t0530000-02;Locus_id=Os09g0530000;CGSNL Gene Symbol=STR4;CGSNL Gene Name=SULFURTRANSFERASE 4;Oryzabase Gene Symbol Synonym(s)=OsStr4;Oryzabase Gene Name Synonym(s)=Sulfurtransferase 4;Note=Rhodanese-like domain containing protein.;Transcript_evidence=AK062568 (DDBJ%2C Best hit);ORF_evidence=NP_001149014.1 (RefSeq);InterPro=Rhodanese-like (IPR001763);NIAS_FLcDNA=001-046-A01;Oryzabase=12054;Expression=AK062568;TENOR=Os09t0530000-02;KEGG=Os09t0530000-02
Chr09	irgsp1_rep	five_prime_UTR	20751807	20751864	.	+	.	Parent=Os09t0530000-02
Chr09	irgsp1_rep	CDS	20751865	20752054	.	+	0	Parent=Os09t0530000-02
Chr09	irgsp1_rep	CDS	20752154	20752200	.	+	2	Parent=Os09t0530000-02
Chr09	irgsp1_rep	CDS	20752483	20752575	.	+	0	Parent=Os09t0530000-02
Chr09	irgsp1_rep	CDS	20752964	20753102	.	+	0	Parent=Os09t0530000-02
Chr09	irgsp1_rep	CDS	20753421	20753523	.	+	2	Parent=Os09t0530000-02
Chr09	irgsp1_rep	CDS	20754142	20754259	.	+	1	Parent=Os09t0530000-02
Chr09	irgsp1_rep	three_prime_UTR	20754260	20754647	.	+	.	Parent=Os09t0530000-02
Chr09	irgsp1_rep	mRNA	20764202	20768214	.	+	.	ID=Os09t0530200-01;Name=Os09t0530200-01;Locus_id=Os09g0530200;CGSNL Gene Symbol=GH9B14;CGSNL Gene Name=GLYCOSIDE HYDROLASE 9B14;Oryzabase Gene Symbol Synonym(s)=OsGH9B14;Oryzabase Gene Name Synonym(s)=glycoside hydrolase OsGH9B14%2C glycoside hydrolase 9B14;Note=Similar to Endo-beta-1%2C4-glucanase precursor (EC 3.2.1.4).;Transcript_evidence=AK106815 (DDBJ%2C Best hit);ORF_evidence=Q69NF5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 9 (IPR001701),Six-hairpin glycosidase-like (IPR008928),Six-hairpin glycosidase (IPR012341),Glycoside hydrolase%2C family 9%2C active site (IPR018221);NIAS_FLcDNA=002-116-D02;Oryzabase=11714;Expression=AK106815;TENOR=Os09t0530200-01;KEGG=Os09t0530200-01 (EC:3.2.1.4)
Chr09	irgsp1_rep	five_prime_UTR	20764202	20764258	.	+	.	Parent=Os09t0530200-01
Chr09	irgsp1_rep	CDS	20764259	20764714	.	+	0	Parent=Os09t0530200-01
Chr09	irgsp1_rep	CDS	20764807	20765109	.	+	0	Parent=Os09t0530200-01
Chr09	irgsp1_rep	CDS	20766655	20766816	.	+	0	Parent=Os09t0530200-01
Chr09	irgsp1_rep	CDS	20766932	20767207	.	+	0	Parent=Os09t0530200-01
Chr09	irgsp1_rep	CDS	20767542	20767892	.	+	0	Parent=Os09t0530200-01
Chr09	irgsp1_rep	three_prime_UTR	20767893	20768214	.	+	.	Parent=Os09t0530200-01
Chr09	irgsp1_rep	mRNA	20766598	20769500	.	-	.	ID=Os09t0530250-01;Name=Os09t0530250-01;Locus_id=Os09g0530250;Note=Non-protein coding transcript.;Transcript_evidence=AK120767 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023007M03;TENOR=Os09t0530250-01
Chr09	irgsp1_rep	exon	20766598	20769500	.	-	.	Parent=Os09t0530250-01
Chr09	irgsp1_rep	mRNA	20768633	20771680	.	+	.	ID=Os09t0530275-00;Name=Os09t0530275-00;Locus_id=Os09g0530275;CGSNL Gene Symbol=CYP71AK1;CGSNL Gene Name=CYTOCHROME P450 71AK1;Oryzabase Gene Symbol Synonym(s)=OsCYP71AK1;Oryzabase Gene Name Synonym(s)=CytoChrome P450 71AK1;Note=CytoChrome P450 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8BDT5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);Oryzabase=21827;TENOR=Os09t0530275-00
Chr09	irgsp1_rep	CDS	20768633	20769145	.	+	0	Parent=Os09t0530275-00
Chr09	irgsp1_rep	CDS	20770208	20770786	.	+	0	Parent=Os09t0530275-00
Chr09	irgsp1_rep	CDS	20770913	20771020	.	+	0	Parent=Os09t0530275-00
Chr09	irgsp1_rep	CDS	20771573	20771680	.	+	0	Parent=Os09t0530275-00
Chr09	irgsp1_rep	mRNA	20774283	20776144	.	+	.	ID=Os09t0530300-01;Name=Os09t0530300-01;Locus_id=Os09g0530300;Note=CytoChrome P450 family protein.;Transcript_evidence=AK120444 (DDBJ%2C Best hit),AK120674 (DDBJ%2C Best hit);ORF_evidence=A2Z3D3 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J013099E24,J013161I12;TENOR=Os09t0530300-01
Chr09	irgsp1_rep	five_prime_UTR	20774283	20774326	.	+	.	Parent=Os09t0530300-01
Chr09	irgsp1_rep	CDS	20774327	20775226	.	+	0	Parent=Os09t0530300-01
Chr09	irgsp1_rep	CDS	20775325	20775948	.	+	0	Parent=Os09t0530300-01
Chr09	irgsp1_rep	three_prime_UTR	20775949	20776144	.	+	.	Parent=Os09t0530300-01
Chr09	irgsp1_rep	mRNA	20775317	20775928	.	-	.	ID=Os09t0530350-00;Name=Os09t0530350-00;Locus_id=Os09g0530350;Note=Hypothetical protein.;Transcript_evidence=EU942896 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0530350-00
Chr09	irgsp1_rep	five_prime_UTR	20775928	20775928	.	-	.	Parent=Os09t0530350-00
Chr09	irgsp1_rep	CDS	20775317	20775927	.	-	0	Parent=Os09t0530350-00
Chr09	irgsp1_rep	mRNA	20779673	20782356	.	+	.	ID=Os09t0530500-01;Name=Os09t0530500-01;Locus_id=Os09g0530500;Note=Hypothetical conserved gene.;Transcript_evidence=AK064528 (DDBJ%2C Best hit);ORF_evidence=B9G4P9 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),SWIB/MDM2 domain (IPR003121),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),SWIB domain (IPR019835);NIAS_FLcDNA=002-111-G12;TENOR=Os09t0530500-01
Chr09	irgsp1_rep	five_prime_UTR	20779673	20779674	.	+	.	Parent=Os09t0530500-01
Chr09	irgsp1_rep	CDS	20779675	20779940	.	+	0	Parent=Os09t0530500-01
Chr09	irgsp1_rep	CDS	20780036	20780115	.	+	1	Parent=Os09t0530500-01
Chr09	irgsp1_rep	CDS	20780532	20780719	.	+	2	Parent=Os09t0530500-01
Chr09	irgsp1_rep	CDS	20781557	20782356	.	+	0	Parent=Os09t0530500-01
Chr09	irgsp1_rep	mRNA	20786238	20786755	.	+	.	ID=Os09t0530600-01;Name=Os09t0530600-01;Locus_id=Os09g0530600;Note=Zinc finger%2C CCCH-type domain containing protein.;Transcript_evidence=AK062804 (DDBJ%2C Best hit);ORF_evidence=B9G4P9 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=001-107-D04;TENOR=Os09t0530600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	20786238	20786239	.	+	.	Parent=Os09t0530600-01
Chr09	irgsp1_rep	CDS	20786240	20786527	.	+	0	Parent=Os09t0530600-01
Chr09	irgsp1_rep	three_prime_UTR	20786528	20786755	.	+	.	Parent=Os09t0530600-01
Chr09	irgsp1_rep	mRNA	20787543	20790463	.	+	.	ID=Os09t0530700-01;Name=Os09t0530700-01;Locus_id=Os09g0530700;Note=Hypothetical conserved gene.;Transcript_evidence=AK100759 (DDBJ%2C Best hit);ORF_evidence=B9G4Q0 (UniProt);NIAS_FLcDNA=J023119B10;Expression=AK100759;TENOR=Os09t0530700-01;KEGG=Os09t0530700-01
Chr09	irgsp1_rep	five_prime_UTR	20787543	20787570	.	+	.	Parent=Os09t0530700-01
Chr09	irgsp1_rep	CDS	20787571	20787751	.	+	0	Parent=Os09t0530700-01
Chr09	irgsp1_rep	CDS	20787938	20788110	.	+	2	Parent=Os09t0530700-01
Chr09	irgsp1_rep	CDS	20789001	20789099	.	+	0	Parent=Os09t0530700-01
Chr09	irgsp1_rep	three_prime_UTR	20789100	20790463	.	+	.	Parent=Os09t0530700-01
Chr09	irgsp1_rep	mRNA	20787549	20790245	.	+	.	ID=Os09t0530700-02;Name=Os09t0530700-02;Locus_id=Os09g0530700;Note=Conserved hypothetical protein.;Transcript_evidence=AK058211 (DDBJ%2C Best hit);ORF_evidence=B9G4Q0 (UniProt);NIAS_FLcDNA=001-010-C06;Expression=AK058211;TENOR=Os09t0530700-02;KEGG=Os09t0530700-02
Chr09	irgsp1_rep	five_prime_UTR	20787549	20787570	.	+	.	Parent=Os09t0530700-02
Chr09	irgsp1_rep	CDS	20787571	20787751	.	+	0	Parent=Os09t0530700-02
Chr09	irgsp1_rep	CDS	20787938	20788110	.	+	2	Parent=Os09t0530700-02
Chr09	irgsp1_rep	CDS	20789001	20789076	.	+	0	Parent=Os09t0530700-02
Chr09	irgsp1_rep	CDS	20789691	20789755	.	+	2	Parent=Os09t0530700-02
Chr09	irgsp1_rep	CDS	20789833	20789955	.	+	0	Parent=Os09t0530700-02
Chr09	irgsp1_rep	three_prime_UTR	20789956	20790245	.	+	.	Parent=Os09t0530700-02
Chr09	irgsp1_rep	mRNA	20794296	20797772	.	-	.	ID=Os09t0530750-00;Name=Os09t0530750-00;Locus_id=Os09g0530750;Note=Hypothetical protein.;Transcript_evidence=tplb0035a24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0530750-00
Chr09	irgsp1_rep	five_prime_UTR	20797195	20797772	.	-	.	Parent=Os09t0530750-00
Chr09	irgsp1_rep	five_prime_UTR	20796927	20797122	.	-	.	Parent=Os09t0530750-00
Chr09	irgsp1_rep	five_prime_UTR	20796709	20796828	.	-	.	Parent=Os09t0530750-00
Chr09	irgsp1_rep	five_prime_UTR	20796515	20796632	.	-	.	Parent=Os09t0530750-00
Chr09	irgsp1_rep	CDS	20796392	20796514	.	-	0	Parent=Os09t0530750-00
Chr09	irgsp1_rep	CDS	20796221	20796313	.	-	0	Parent=Os09t0530750-00
Chr09	irgsp1_rep	CDS	20796014	20796133	.	-	0	Parent=Os09t0530750-00
Chr09	irgsp1_rep	three_prime_UTR	20795557	20796013	.	-	.	Parent=Os09t0530750-00
Chr09	irgsp1_rep	three_prime_UTR	20795334	20795433	.	-	.	Parent=Os09t0530750-00
Chr09	irgsp1_rep	three_prime_UTR	20795073	20795232	.	-	.	Parent=Os09t0530750-00
Chr09	irgsp1_rep	three_prime_UTR	20794823	20794935	.	-	.	Parent=Os09t0530750-00
Chr09	irgsp1_rep	three_prime_UTR	20794613	20794720	.	-	.	Parent=Os09t0530750-00
Chr09	irgsp1_rep	three_prime_UTR	20794296	20794508	.	-	.	Parent=Os09t0530750-00
Chr09	irgsp1_rep	mRNA	20794568	20797868	.	+	.	ID=Os09t0530800-00;Name=Os09t0530800-00;Locus_id=Os09g0530800;Oryzabase Gene Symbol Synonym(s)=OsSub59%2C SUB59;Oryzabase Gene Name Synonym(s)=Subtilisin 59%2C SUBTILISIN 59;Note=Similar to predicted protein.;Transcript_evidence=EU975093 (DDBJ);ORF_evidence=XP_002460565.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500);Oryzabase=20143;TENOR=Os09t0530800-00;KEGG=Os09t0530800-00
Chr09	irgsp1_rep	CDS	20794568	20794740	.	+	0	Parent=Os09t0530800-00
Chr09	irgsp1_rep	CDS	20794843	20794940	.	+	1	Parent=Os09t0530800-00
Chr09	irgsp1_rep	CDS	20795077	20795235	.	+	2	Parent=Os09t0530800-00
Chr09	irgsp1_rep	CDS	20795337	20795448	.	+	2	Parent=Os09t0530800-00
Chr09	irgsp1_rep	CDS	20795573	20795585	.	+	1	Parent=Os09t0530800-00
Chr09	irgsp1_rep	three_prime_UTR	20795586	20796121	.	+	.	Parent=Os09t0530800-00
Chr09	irgsp1_rep	three_prime_UTR	20796211	20796308	.	+	.	Parent=Os09t0530800-00
Chr09	irgsp1_rep	three_prime_UTR	20796383	20796622	.	+	.	Parent=Os09t0530800-00
Chr09	irgsp1_rep	three_prime_UTR	20796705	20796819	.	+	.	Parent=Os09t0530800-00
Chr09	irgsp1_rep	three_prime_UTR	20796921	20797125	.	+	.	Parent=Os09t0530800-00
Chr09	irgsp1_rep	three_prime_UTR	20797198	20797868	.	+	.	Parent=Os09t0530800-00
Chr09	irgsp1_rep	mRNA	20797920	20798536	.	-	.	ID=Os09t0530900-01;Name=Os09t0530900-01;Locus_id=Os09g0530900;Note=Similar to Oxydoreductase-like protein.;Transcript_evidence=AK105162 (DDBJ%2C Best hit);ORF_evidence=XP_002462713.1 (RefSeq);InterPro=Oxidoreductase-like%2C N-terminal (IPR019180);NIAS_FLcDNA=001-104-D01;Expression=AK105162;TENOR=Os09t0530900-01;KEGG=Os09t0530900-01
Chr09	irgsp1_rep	five_prime_UTR	20798523	20798536	.	-	.	Parent=Os09t0530900-01
Chr09	irgsp1_rep	CDS	20798175	20798522	.	-	0	Parent=Os09t0530900-01
Chr09	irgsp1_rep	three_prime_UTR	20797920	20798174	.	-	.	Parent=Os09t0530900-01
Chr09	irgsp1_rep	mRNA	20799161	20802920	.	-	.	ID=Os09t0531100-01;Name=Os09t0531100-01;Locus_id=Os09g0531100;Note=Conserved hypothetical protein.;Transcript_evidence=AK110919 (DDBJ%2C Best hit);ORF_evidence=A3C0W4 (UniProt);NIAS_FLcDNA=002-173-C12;Expression=AK110919;TENOR=Os09t0531100-01;KEGG=Os09t0531100-01
Chr09	irgsp1_rep	five_prime_UTR	20802837	20802920	.	-	.	Parent=Os09t0531100-01
Chr09	irgsp1_rep	CDS	20802765	20802836	.	-	0	Parent=Os09t0531100-01
Chr09	irgsp1_rep	CDS	20802589	20802668	.	-	0	Parent=Os09t0531100-01
Chr09	irgsp1_rep	CDS	20801920	20802025	.	-	1	Parent=Os09t0531100-01
Chr09	irgsp1_rep	CDS	20801160	20801258	.	-	0	Parent=Os09t0531100-01
Chr09	irgsp1_rep	CDS	20800984	20801049	.	-	0	Parent=Os09t0531100-01
Chr09	irgsp1_rep	CDS	20800755	20800871	.	-	0	Parent=Os09t0531100-01
Chr09	irgsp1_rep	CDS	20800431	20800505	.	-	0	Parent=Os09t0531100-01
Chr09	irgsp1_rep	CDS	20800225	20800327	.	-	0	Parent=Os09t0531100-01
Chr09	irgsp1_rep	CDS	20800087	20800134	.	-	2	Parent=Os09t0531100-01
Chr09	irgsp1_rep	CDS	20799884	20800005	.	-	2	Parent=Os09t0531100-01
Chr09	irgsp1_rep	CDS	20799654	20799755	.	-	0	Parent=Os09t0531100-01
Chr09	irgsp1_rep	three_prime_UTR	20799547	20799653	.	-	.	Parent=Os09t0531100-01
Chr09	irgsp1_rep	three_prime_UTR	20799161	20799462	.	-	.	Parent=Os09t0531100-01
Chr09	irgsp1_rep	mRNA	20811366	20813170	.	-	.	ID=Os09t0531200-01;Name=Os09t0531200-01;Locus_id=Os09g0531200;Note=RNA recognition motif 2 domain containing protein.;Transcript_evidence=AK064107 (DDBJ%2C Best hit);ORF_evidence=Q652K6 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=RNA recognition motif 2 (IPR007201),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=002-101-E10;Expression=AK064107;TENOR=Os09t0531200-01;KEGG=Os09t0531200-01
Chr09	irgsp1_rep	five_prime_UTR	20813121	20813170	.	-	.	Parent=Os09t0531200-01
Chr09	irgsp1_rep	CDS	20812576	20813120	.	-	0	Parent=Os09t0531200-01
Chr09	irgsp1_rep	CDS	20812317	20812451	.	-	1	Parent=Os09t0531200-01
Chr09	irgsp1_rep	CDS	20812085	20812226	.	-	1	Parent=Os09t0531200-01
Chr09	irgsp1_rep	CDS	20811834	20811983	.	-	0	Parent=Os09t0531200-01
Chr09	irgsp1_rep	three_prime_UTR	20811366	20811833	.	-	.	Parent=Os09t0531200-01
Chr09	irgsp1_rep	mRNA	20838544	20839929	.	-	.	ID=Os09t0531600-01;Name=Os09t0531600-01;Locus_id=Os09g0531600;RAP-DB Gene Symbol Synonym(s)=OsSHI1;RAP-DB Gene Name Synonym(s)=SHORT INTERNODES1;CGSNL Gene Symbol=SHI1;CGSNL Gene Name=SHORT INTERNODES1;Oryzabase Gene Symbol Synonym(s)=OsSHI1;Oryzabase Gene Name Synonym(s)=SHORT INTERNODES 1;Note=Plant-specific transcription factor of the SHI family%2C Regulation of plant architecture%2C Regulation of tillering and panicle branching;Transcript_evidence=AK241285;ORF_evidence=Q652K4;InterPro=Zinc finger%2C lateral root primordium type 1 (IPR006510),SHORT INTERNODES%2C C-terminal (IPR006511);NIAS_FLcDNA=J065137A19;Manual Curation=May 15%2C 2019;Literature_PMID=30914468;Oryzabase=23082;TENOR=Os09t0531600-01;KEGG=Os09t0531600-01;Subcellular location=nucleus (GO:0005634)
Chr09	irgsp1_rep	five_prime_UTR	20839850	20839929	.	-	.	Parent=Os09t0531600-01
Chr09	irgsp1_rep	CDS	20839303	20839849	.	-	0	Parent=Os09t0531600-01
Chr09	irgsp1_rep	CDS	20838826	20839226	.	-	2	Parent=Os09t0531600-01
Chr09	irgsp1_rep	three_prime_UTR	20838544	20838825	.	-	.	Parent=Os09t0531600-01
Chr09	irgsp1_rep	mRNA	20852237	20852968	.	+	.	ID=Os09t0531650-00;Name=Os09t0531650-00;Locus_id=Os09g0531650;Note=Conserved hypothetical protein.;Transcript_evidence=FP092259 (DDBJ);ORF_evidence=NP_001183070.1 (RefSeq);TENOR=Os09t0531650-00
Chr09	irgsp1_rep	CDS	20852237	20852968	.	+	0	Parent=Os09t0531650-00
Chr09	irgsp1_rep	mRNA	20852282	20853613	.	-	.	ID=Os09t0531701-00;Name=Os09t0531701-00;Locus_id=Os09g0531701;CGSNL Gene Symbol=GAUT1;CGSNL Gene Name=GALACTURONOSYLTRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=OsGAUT1;Oryzabase Gene Name Synonym(s)=galacturonosyltransferase 1;Note=Similar to BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1.;Transcript_evidence=tplb0001d12 (Wheat FLcDNA);ORF_evidence=B6TD20 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=23250;TENOR=Os09t0531701-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	20853428	20853613	.	-	0	Parent=Os09t0531701-00
Chr09	irgsp1_rep	CDS	20853005	20853282	.	-	0	Parent=Os09t0531701-00
Chr09	irgsp1_rep	CDS	20852282	20852924	.	-	1	Parent=Os09t0531701-00
Chr09	irgsp1_rep	mRNA	20857047	20861083	.	-	.	ID=Os09t0531800-01;Name=Os09t0531800-01;Locus_id=Os09g0531800;CGSNL Gene Symbol=GAUT1;CGSNL Gene Name=GALACTURONOSYLTRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=OsGAUT1;Oryzabase Gene Name Synonym(s)=galacturonosyltransferase 1;Note=Glycosyl transferase%2C family 8 protein.;Transcript_evidence=AK119405 (DDBJ%2C Best hit);ORF_evidence=E6NU27 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 8 (IPR002495);NIAS_FLcDNA=001-132-E10;Oryzabase=23250;Expression=AK119405;TENOR=Os09t0531800-01;KEGG=Os09t0531800-01
Chr09	irgsp1_rep	five_prime_UTR	20860818	20861083	.	-	.	Parent=Os09t0531800-01
Chr09	irgsp1_rep	five_prime_UTR	20860143	20860168	.	-	.	Parent=Os09t0531800-01
Chr09	irgsp1_rep	five_prime_UTR	20860004	20860063	.	-	.	Parent=Os09t0531800-01
Chr09	irgsp1_rep	five_prime_UTR	20859458	20859647	.	-	.	Parent=Os09t0531800-01
Chr09	irgsp1_rep	five_prime_UTR	20859318	20859358	.	-	.	Parent=Os09t0531800-01
Chr09	irgsp1_rep	five_prime_UTR	20859123	20859213	.	-	.	Parent=Os09t0531800-01
Chr09	irgsp1_rep	CDS	20858887	20859122	.	-	0	Parent=Os09t0531800-01
Chr09	irgsp1_rep	CDS	20858458	20858812	.	-	1	Parent=Os09t0531800-01
Chr09	irgsp1_rep	CDS	20857792	20858379	.	-	0	Parent=Os09t0531800-01
Chr09	irgsp1_rep	CDS	20857440	20857688	.	-	0	Parent=Os09t0531800-01
Chr09	irgsp1_rep	three_prime_UTR	20857047	20857439	.	-	.	Parent=Os09t0531800-01
Chr09	irgsp1_rep	mRNA	20857472	20858715	.	+	.	ID=Os09t0531850-00;Name=Os09t0531850-00;Locus_id=Os09g0531850;Note=Hypothetical protein.;Transcript_evidence=tplb0056b02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0531850-00
Chr09	irgsp1_rep	five_prime_UTR	20857472	20857679	.	+	.	Parent=Os09t0531850-00
Chr09	irgsp1_rep	five_prime_UTR	20857783	20858200	.	+	.	Parent=Os09t0531850-00
Chr09	irgsp1_rep	CDS	20858201	20858376	.	+	0	Parent=Os09t0531850-00
Chr09	irgsp1_rep	CDS	20858455	20858524	.	+	1	Parent=Os09t0531850-00
Chr09	irgsp1_rep	three_prime_UTR	20858525	20858715	.	+	.	Parent=Os09t0531850-00
Chr09	irgsp1_rep	mRNA	20862728	20866739	.	-	.	ID=Os09t0531900-01;Name=Os09t0531900-01;Locus_id=Os09g0531900;CGSNL Gene Symbol=GAUT2;CGSNL Gene Name=GALACTURONOSYLTRANSFERASE 2;Oryzabase Gene Symbol Synonym(s)=OsGAUT2;Oryzabase Gene Name Synonym(s)=galacturonosyltransferase 2;Note=Similar to Glycosyltransferase QUASIMODO1 (EC 2.4.1.-).;Transcript_evidence=AK073015 (DDBJ%2C Best hit);ORF_evidence=E6NU27 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 8 (IPR002495);NIAS_FLcDNA=J023149G11;Oryzabase=23261;Expression=AK073015;TENOR=Os09t0531900-01;KEGG=Os09t0531900-01
Chr09	irgsp1_rep	five_prime_UTR	20866658	20866739	.	-	.	Parent=Os09t0531900-01
Chr09	irgsp1_rep	CDS	20866465	20866657	.	-	0	Parent=Os09t0531900-01
Chr09	irgsp1_rep	CDS	20865825	20865850	.	-	2	Parent=Os09t0531900-01
Chr09	irgsp1_rep	CDS	20865682	20865741	.	-	0	Parent=Os09t0531900-01
Chr09	irgsp1_rep	CDS	20865115	20865325	.	-	0	Parent=Os09t0531900-01
Chr09	irgsp1_rep	CDS	20864986	20865026	.	-	2	Parent=Os09t0531900-01
Chr09	irgsp1_rep	CDS	20864542	20864876	.	-	0	Parent=Os09t0531900-01
Chr09	irgsp1_rep	CDS	20864091	20864448	.	-	1	Parent=Os09t0531900-01
Chr09	irgsp1_rep	CDS	20863417	20864004	.	-	0	Parent=Os09t0531900-01
Chr09	irgsp1_rep	CDS	20863038	20863313	.	-	0	Parent=Os09t0531900-01
Chr09	irgsp1_rep	three_prime_UTR	20862728	20863037	.	-	.	Parent=Os09t0531900-01
Chr09	irgsp1_rep	mRNA	20862643	20863093	.	-	.	ID=Os09t0531900-02;Name=Os09t0531900-02;Locus_id=Os09g0531900;CGSNL Gene Symbol=GAUT2;CGSNL Gene Name=GALACTURONOSYLTRANSFERASE 2;Oryzabase Gene Symbol Synonym(s)=OsGAUT2;Oryzabase Gene Name Synonym(s)=galacturonosyltransferase 2;Note=Conserved hypothetical protein.;Transcript_evidence=AK059380 (DDBJ%2C Best hit);ORF_evidence=B8BDU2 (UniProt);NIAS_FLcDNA=001-026-G01;Oryzabase=23261;TENOR=Os09t0531900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	20863092	20863093	.	-	.	Parent=Os09t0531900-02
Chr09	irgsp1_rep	CDS	20863038	20863091	.	-	0	Parent=Os09t0531900-02
Chr09	irgsp1_rep	three_prime_UTR	20862643	20863037	.	-	.	Parent=Os09t0531900-02
Chr09	irgsp1_rep	mRNA	20863050	20864351	.	+	.	ID=Os09t0531950-00;Name=Os09t0531950-00;Locus_id=Os09g0531950;Note=Hypothetical protein.;Transcript_evidence=tplb0056b02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0531950-00
Chr09	irgsp1_rep	five_prime_UTR	20863050	20863099	.	+	.	Parent=Os09t0531950-00
Chr09	irgsp1_rep	CDS	20863100	20863304	.	+	0	Parent=Os09t0531950-00
Chr09	irgsp1_rep	CDS	20863408	20863448	.	+	2	Parent=Os09t0531950-00
Chr09	irgsp1_rep	three_prime_UTR	20863449	20864012	.	+	.	Parent=Os09t0531950-00
Chr09	irgsp1_rep	three_prime_UTR	20864096	20864351	.	+	.	Parent=Os09t0531950-00
Chr09	irgsp1_rep	mRNA	20868846	20871077	.	-	.	ID=Os09t0532000-01;Name=Os09t0532000-01;Locus_id=Os09g0532000;RAP-DB Gene Symbol Synonym(s)=SGR%2C sgr(t)%2C sgr%2C OsSGR;RAP-DB Gene Name Synonym(s)=STAY GREEN LEAF%2C stay green leaf (t)%2C stay green%2C staying green during senescence;CGSNL Gene Symbol=SGR;CGSNL Gene Name=STAY GREEN LEAF;Oryzabase Gene Symbol Synonym(s)=sgr(t)%2C sgr%2C OsSGR%2C OsSgr;Oryzabase Gene Name Synonym(s)=stay green leaf (t)%2C stay green%2C staying green during senescence%2C Stay-Green;Note=Senescence-inducible chloroplast protein%2C Activation of the chlorophll-degrading pathway during leaf senescence;Transcript_evidence=AY850134 (Hwacheong-wx),AK105810;ORF_evidence=Q652K1;InterPro=Staygreen protein (IPR024438),TonB box%2C conserved site (IPR010916);NIAS_FLcDNA=001-203-B12;Manual Curation=December 14%2C 2009;Literature_PMID=12582654,17513504,17709752,17714430;Oryzabase=2464;Expression=AK105810;TENOR=Os09t0532000-01;KEGG=Os09t0532000-01
Chr09	irgsp1_rep	five_prime_UTR	20870828	20871077	.	-	.	Parent=Os09t0532000-01
Chr09	irgsp1_rep	CDS	20870687	20870827	.	-	0	Parent=Os09t0532000-01
Chr09	irgsp1_rep	CDS	20870234	20870581	.	-	0	Parent=Os09t0532000-01
Chr09	irgsp1_rep	CDS	20869147	20869482	.	-	0	Parent=Os09t0532000-01
Chr09	irgsp1_rep	three_prime_UTR	20868846	20869146	.	-	.	Parent=Os09t0532000-01
Chr09	irgsp1_rep	mRNA	20880888	20881570	.	-	.	ID=Os09t0532200-00;Name=Os09t0532200-00;Locus_id=Os09g0532200;Note=Hypothetical conserved gene.;Transcript_evidence=AK330869 (DDBJ);ORF_evidence=NP_001063759.2 (RefSeq);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);TENOR=Os09t0532200-00;KEGG=Os09t0532200-00
Chr09	irgsp1_rep	five_prime_UTR	20881568	20881570	.	-	.	Parent=Os09t0532200-00
Chr09	irgsp1_rep	CDS	20880911	20881567	.	-	0	Parent=Os09t0532200-00
Chr09	irgsp1_rep	three_prime_UTR	20880888	20880910	.	-	.	Parent=Os09t0532200-00
Chr09	irgsp1_rep	mRNA	20885198	20889792	.	-	.	ID=Os09t0532400-01;Name=Os09t0532400-01;Locus_id=Os09g0532400;RAP-DB Gene Symbol Synonym(s)=OsPRR95;RAP-DB Gene Name Synonym(s)=Pseudo-Response Regulator 95;CGSNL Gene Symbol=PRR95;CGSNL Gene Name=PSEUDO-RESPONSE REGULATOR 95;Oryzabase Gene Symbol Synonym(s)=OsPRR95%2C Os-PRR95%2C Prr2%2C OsPRR2%2C OsCCT33;Oryzabase Gene Name Synonym(s)=pseudo-response regulator 2%2C CCT domain-containing gene 33%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 33%2C CCT domain protein 33;Note=Circadian-associated rice pseudo response regulator%2C Control of flowering time;Transcript_evidence=AB189041,AK067728;ORF_evidence=Q689G6;GO=Biological Process: phosphorelay signal transduction system (GO:0000160),Molecular Function: protein binding (GO:0005515);InterPro=CheY-like superfamily (IPR011006),Signal transduction response regulator%2C receiver domain (IPR001789),CCT domain (IPR010402);NIAS_FLcDNA=J013116P12;Manual Curation=September 6%2C 2017;Literature_PMID=17132630,15725670,14634161;Oryzabase=8821;Expression=AK067728;TENOR=Os09t0532400-01;KEGG=Os09t0532400-01
Chr09	irgsp1_rep	five_prime_UTR	20889658	20889792	.	-	.	Parent=Os09t0532400-01
Chr09	irgsp1_rep	CDS	20889453	20889657	.	-	0	Parent=Os09t0532400-01
Chr09	irgsp1_rep	CDS	20888568	20888729	.	-	2	Parent=Os09t0532400-01
Chr09	irgsp1_rep	CDS	20888345	20888475	.	-	2	Parent=Os09t0532400-01
Chr09	irgsp1_rep	CDS	20888067	20888219	.	-	0	Parent=Os09t0532400-01
Chr09	irgsp1_rep	CDS	20887255	20887393	.	-	0	Parent=Os09t0532400-01
Chr09	irgsp1_rep	CDS	20886804	20887125	.	-	2	Parent=Os09t0532400-01
Chr09	irgsp1_rep	CDS	20885782	20886448	.	-	1	Parent=Os09t0532400-01
Chr09	irgsp1_rep	CDS	20885589	20885681	.	-	0	Parent=Os09t0532400-01
Chr09	irgsp1_rep	three_prime_UTR	20885198	20885588	.	-	.	Parent=Os09t0532400-01
Chr09	irgsp1_rep	mRNA	20885173	20889703	.	-	.	ID=Os09t0532400-02;Name=Os09t0532400-02;Locus_id=Os09g0532400;CGSNL Gene Symbol=PRR95;CGSNL Gene Name=PSEUDO-RESPONSE REGULATOR 95;Oryzabase Gene Symbol Synonym(s)=OsPRR95%2C Os-PRR95%2C Prr2%2C OsPRR2%2C OsCCT33;Oryzabase Gene Name Synonym(s)=pseudo-response regulator 2%2C CCT domain-containing gene 33%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 33%2C CCT domain protein 33;Note=Signal transduction response regulator%2C receiver region domain containing protein.;Transcript_evidence=AK067314 (DDBJ%2C Best hit);ORF_evidence=Q689G6 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: two-component response regulator activity (GO:0000156),Molecular Function: protein binding (GO:0005515);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),CCT domain (IPR010402),CheY-like superfamily (IPR011006);NIAS_FLcDNA=J013102G21;Oryzabase=8821;Expression=AK067314;TENOR=Os09t0532400-02;KEGG=Os09t0532400-02
Chr09	irgsp1_rep	five_prime_UTR	20889658	20889703	.	-	.	Parent=Os09t0532400-02
Chr09	irgsp1_rep	CDS	20889453	20889657	.	-	0	Parent=Os09t0532400-02
Chr09	irgsp1_rep	CDS	20888568	20888729	.	-	2	Parent=Os09t0532400-02
Chr09	irgsp1_rep	CDS	20888345	20888475	.	-	2	Parent=Os09t0532400-02
Chr09	irgsp1_rep	CDS	20888067	20888219	.	-	0	Parent=Os09t0532400-02
Chr09	irgsp1_rep	CDS	20887255	20887393	.	-	0	Parent=Os09t0532400-02
Chr09	irgsp1_rep	CDS	20886804	20887125	.	-	2	Parent=Os09t0532400-02
Chr09	irgsp1_rep	CDS	20885782	20886448	.	-	1	Parent=Os09t0532400-02
Chr09	irgsp1_rep	CDS	20885589	20885681	.	-	0	Parent=Os09t0532400-02
Chr09	irgsp1_rep	three_prime_UTR	20885173	20885588	.	-	.	Parent=Os09t0532400-02
Chr09	irgsp1_rep	mRNA	20894870	20897268	.	+	.	ID=Os09t0532500-01;Name=Os09t0532500-01;Locus_id=Os09g0532500;Note=Similar to peptidase S8 and S53%2C subtilisin%2C kexin%2C sedolisin.;Transcript_evidence=AK065203 (DDBJ%2C Best hit);ORF_evidence=NP_001146846.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013002F02;TENOR=Os09t0532500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	20894870	20894871	.	+	.	Parent=Os09t0532500-01
Chr09	irgsp1_rep	CDS	20894872	20895079	.	+	0	Parent=Os09t0532500-01
Chr09	irgsp1_rep	CDS	20895129	20896132	.	+	2	Parent=Os09t0532500-01
Chr09	irgsp1_rep	three_prime_UTR	20896133	20897268	.	+	.	Parent=Os09t0532500-01
Chr09	irgsp1_rep	mRNA	20897691	20903515	.	+	.	ID=Os09t0532700-01;Name=Os09t0532700-01;Locus_id=Os09g0532700;Oryzabase Gene Name Synonym(s)=deoxyribodipyrimidine photolyase protein-like family protein;Note=Rossmann-like alpha/beta/alpha sandwich fold domain containing protein.;Transcript_evidence=AK069946 (DDBJ%2C Best hit);ORF_evidence=B6ST57 (UniProt);GO=Biological Process: DNA repair (GO:0006281),Molecular Function: DNA photolyase activity (GO:0003913);InterPro=DNA photolyase%2C N-terminal (IPR006050),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J023035A19;Oryzabase=21437;Expression=AK069946;TENOR=Os09t0532700-01;KEGG=Os09t0532700-01
Chr09	irgsp1_rep	five_prime_UTR	20897691	20897752	.	+	.	Parent=Os09t0532700-01
Chr09	irgsp1_rep	CDS	20897753	20898011	.	+	0	Parent=Os09t0532700-01
Chr09	irgsp1_rep	CDS	20898722	20898855	.	+	2	Parent=Os09t0532700-01
Chr09	irgsp1_rep	CDS	20898971	20899123	.	+	0	Parent=Os09t0532700-01
Chr09	irgsp1_rep	CDS	20899209	20899320	.	+	0	Parent=Os09t0532700-01
Chr09	irgsp1_rep	CDS	20899415	20899745	.	+	2	Parent=Os09t0532700-01
Chr09	irgsp1_rep	CDS	20899917	20900130	.	+	1	Parent=Os09t0532700-01
Chr09	irgsp1_rep	CDS	20900235	20900324	.	+	0	Parent=Os09t0532700-01
Chr09	irgsp1_rep	CDS	20901062	20901317	.	+	0	Parent=Os09t0532700-01
Chr09	irgsp1_rep	CDS	20901422	20901534	.	+	2	Parent=Os09t0532700-01
Chr09	irgsp1_rep	CDS	20902126	20902224	.	+	0	Parent=Os09t0532700-01
Chr09	irgsp1_rep	CDS	20902308	20902355	.	+	0	Parent=Os09t0532700-01
Chr09	irgsp1_rep	CDS	20902450	20902560	.	+	0	Parent=Os09t0532700-01
Chr09	irgsp1_rep	CDS	20902671	20902761	.	+	0	Parent=Os09t0532700-01
Chr09	irgsp1_rep	CDS	20902868	20902944	.	+	2	Parent=Os09t0532700-01
Chr09	irgsp1_rep	three_prime_UTR	20902945	20902973	.	+	.	Parent=Os09t0532700-01
Chr09	irgsp1_rep	three_prime_UTR	20903103	20903142	.	+	.	Parent=Os09t0532700-01
Chr09	irgsp1_rep	three_prime_UTR	20903228	20903515	.	+	.	Parent=Os09t0532700-01
Chr09	irgsp1_rep	mRNA	20905466	20908479	.	+	.	ID=Os09t0532800-01;Name=Os09t0532800-01;Locus_id=Os09g0532800;Note=Similar to peptidase S8 and S53%2C subtilisin%2C kexin%2C sedolisin.;Transcript_evidence=AK241501 (DDBJ%2C Best hit);ORF_evidence=NP_001146846.1 (RefSeq);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J065167K16;TENOR=Os09t0532800-01;KEGG=Os09t0532800-01
Chr09	irgsp1_rep	five_prime_UTR	20905466	20905491	.	+	.	Parent=Os09t0532800-01
Chr09	irgsp1_rep	CDS	20905492	20906712	.	+	0	Parent=Os09t0532800-01
Chr09	irgsp1_rep	three_prime_UTR	20906713	20907803	.	+	.	Parent=Os09t0532800-01
Chr09	irgsp1_rep	three_prime_UTR	20907906	20908058	.	+	.	Parent=Os09t0532800-01
Chr09	irgsp1_rep	three_prime_UTR	20908144	20908479	.	+	.	Parent=Os09t0532800-01
Chr09	irgsp1_rep	mRNA	20916157	20925632	.	-	.	ID=Os09t0532900-01;Name=Os09t0532900-01;Locus_id=Os09g0532900;Oryzabase Gene Symbol Synonym(s)=OsMYB42/85%2C MYB42/85%2C OsMYB85%2C MYB85;Oryzabase Gene Name Synonym(s)=myb transcription factor 42/85%2C transcription factor MYB42/85;Note=Similar to Myb13 protein.;Transcript_evidence=AK121023 (DDBJ%2C Best hit);ORF_evidence=Q8GRY3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J023049M10;Oryzabase=15018;Expression=AK121023;TENOR=Os09t0532900-01;KEGG=Os09t0532900-01
Chr09	irgsp1_rep	five_prime_UTR	20925510	20925632	.	-	.	Parent=Os09t0532900-01
Chr09	irgsp1_rep	five_prime_UTR	20925214	20925405	.	-	.	Parent=Os09t0532900-01
Chr09	irgsp1_rep	five_prime_UTR	20922252	20925097	.	-	.	Parent=Os09t0532900-01
Chr09	irgsp1_rep	five_prime_UTR	20921808	20921969	.	-	.	Parent=Os09t0532900-01
Chr09	irgsp1_rep	five_prime_UTR	20920797	20921310	.	-	.	Parent=Os09t0532900-01
Chr09	irgsp1_rep	five_prime_UTR	20920039	20920087	.	-	.	Parent=Os09t0532900-01
Chr09	irgsp1_rep	five_prime_UTR	20919798	20919959	.	-	.	Parent=Os09t0532900-01
Chr09	irgsp1_rep	five_prime_UTR	20919623	20919704	.	-	.	Parent=Os09t0532900-01
Chr09	irgsp1_rep	CDS	20919360	20919622	.	-	0	Parent=Os09t0532900-01
Chr09	irgsp1_rep	CDS	20916157	20916430	.	-	1	Parent=Os09t0532900-01
Chr09	irgsp1_rep	mRNA	20923469	20925573	.	-	.	ID=Os09t0532900-02;Name=Os09t0532900-02;Locus_id=Os09g0532900;Oryzabase Gene Symbol Synonym(s)=OsMYB42/85%2C MYB42/85%2C OsMYB85%2C MYB85;Oryzabase Gene Name Synonym(s)=myb transcription factor 42/85%2C transcription factor MYB42/85;Note=Hypothetical conserved gene.;Transcript_evidence=AK106873 (DDBJ%2C Best hit);ORF_evidence=B8BDU8 (UniProt);NIAS_FLcDNA=002-118-D10;Oryzabase=15018;Expression=AK106873;TENOR=Os09t0532900-02;KEGG=Os09t0532900-02
Chr09	irgsp1_rep	five_prime_UTR	20925573	20925573	.	-	.	Parent=Os09t0532900-02
Chr09	irgsp1_rep	CDS	20925510	20925572	.	-	0	Parent=Os09t0532900-02
Chr09	irgsp1_rep	CDS	20925214	20925405	.	-	0	Parent=Os09t0532900-02
Chr09	irgsp1_rep	CDS	20925038	20925097	.	-	0	Parent=Os09t0532900-02
Chr09	irgsp1_rep	three_prime_UTR	20923469	20925037	.	-	.	Parent=Os09t0532900-02
Chr09	irgsp1_rep	mRNA	20915434	20919808	.	-	.	ID=Os09t0532900-04;Name=Os09t0532900-04;Locus_id=Os09g0532900;Oryzabase Gene Symbol Synonym(s)=OsMYB42/85%2C MYB42/85%2C OsMYB85%2C MYB85;Oryzabase Gene Name Synonym(s)=myb transcription factor 42/85%2C transcription factor MYB42/85;Note=Myb transcription factor domain containing protein.;Transcript_evidence=AK111740 (DDBJ%2C Best hit),AK106039 (DDBJ%2C Best hit);ORF_evidence=Q8GRY3 (UniProt);NIAS_FLcDNA=J023047I22,001-206-D11;Oryzabase=15018;Expression=AK111740;TENOR=Os09t0532900-04;KEGG=Os09t0532900-04
Chr09	irgsp1_rep	five_prime_UTR	20919623	20919808	.	-	.	Parent=Os09t0532900-04
Chr09	irgsp1_rep	CDS	20919360	20919622	.	-	0	Parent=Os09t0532900-04
Chr09	irgsp1_rep	CDS	20915836	20916430	.	-	1	Parent=Os09t0532900-04
Chr09	irgsp1_rep	three_prime_UTR	20915434	20915835	.	-	.	Parent=Os09t0532900-04
Chr09	irgsp1_rep	mRNA	20929628	20938388	.	+	.	ID=Os09t0533100-01;Name=Os09t0533100-01;Locus_id=Os09g0533100;Note=Similar to Pantothenate kinase 4 (Fragment).;Transcript_evidence=AK106530 (DDBJ%2C Best hit);ORF_evidence=NP_194945.3 (RefSeq);GO=Biological Process: coenzyme A biosynthetic process (GO:0015937),Molecular Function: pantothenate kinase activity (GO:0004594),Molecular Function: ATP binding (GO:0005524);InterPro=Domain of unknown function DUF89 (IPR002791),Type II pantothenate kinase (IPR004567);NIAS_FLcDNA=002-107-H05;Expression=AK106530;TENOR=Os09t0533100-01;KEGG=Os09t0533100-01
Chr09	irgsp1_rep	CDS	20929628	20929667	.	+	0	Parent=Os09t0533100-01
Chr09	irgsp1_rep	CDS	20930165	20930220	.	+	2	Parent=Os09t0533100-01
Chr09	irgsp1_rep	CDS	20930810	20930926	.	+	0	Parent=Os09t0533100-01
Chr09	irgsp1_rep	CDS	20931094	20931213	.	+	0	Parent=Os09t0533100-01
Chr09	irgsp1_rep	CDS	20931303	20931397	.	+	0	Parent=Os09t0533100-01
Chr09	irgsp1_rep	CDS	20931485	20931578	.	+	1	Parent=Os09t0533100-01
Chr09	irgsp1_rep	CDS	20931799	20931930	.	+	0	Parent=Os09t0533100-01
Chr09	irgsp1_rep	CDS	20932583	20932695	.	+	0	Parent=Os09t0533100-01
Chr09	irgsp1_rep	CDS	20932816	20933006	.	+	1	Parent=Os09t0533100-01
Chr09	irgsp1_rep	CDS	20933341	20933554	.	+	2	Parent=Os09t0533100-01
Chr09	irgsp1_rep	CDS	20934173	20934214	.	+	1	Parent=Os09t0533100-01
Chr09	irgsp1_rep	CDS	20934295	20934343	.	+	1	Parent=Os09t0533100-01
Chr09	irgsp1_rep	CDS	20934836	20934918	.	+	0	Parent=Os09t0533100-01
Chr09	irgsp1_rep	CDS	20935079	20935195	.	+	1	Parent=Os09t0533100-01
Chr09	irgsp1_rep	CDS	20935286	20935349	.	+	1	Parent=Os09t0533100-01
Chr09	irgsp1_rep	CDS	20935450	20935595	.	+	0	Parent=Os09t0533100-01
Chr09	irgsp1_rep	CDS	20935726	20935879	.	+	1	Parent=Os09t0533100-01
Chr09	irgsp1_rep	CDS	20936436	20936519	.	+	0	Parent=Os09t0533100-01
Chr09	irgsp1_rep	CDS	20936600	20936794	.	+	0	Parent=Os09t0533100-01
Chr09	irgsp1_rep	CDS	20936900	20936971	.	+	0	Parent=Os09t0533100-01
Chr09	irgsp1_rep	CDS	20937855	20937944	.	+	0	Parent=Os09t0533100-01
Chr09	irgsp1_rep	three_prime_UTR	20937945	20938005	.	+	.	Parent=Os09t0533100-01
Chr09	irgsp1_rep	three_prime_UTR	20938142	20938388	.	+	.	Parent=Os09t0533100-01
Chr09	irgsp1_rep	mRNA	20938553	20939706	.	-	.	ID=Os09t0533200-00;Name=Os09t0533200-00;Locus_id=Os09g0533200;Note=Glycoside hydrolase%2C family 17 domain containing protein.;Transcript_evidence=EU966046 (DDBJ);ORF_evidence=GeneMark;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);TENOR=Os09t0533200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	20938603	20939706	.	-	0	Parent=Os09t0533200-00
Chr09	irgsp1_rep	three_prime_UTR	20938553	20938602	.	-	.	Parent=Os09t0533200-00
Chr09	irgsp1_rep	mRNA	20942494	20945847	.	+	.	ID=Os09t0533300-01;Name=Os09t0533300-01;Locus_id=Os09g0533300;Note=Metallophosphoesterase domain containing protein.;Transcript_evidence=AK073741 (DDBJ%2C Best hit);ORF_evidence=B6TXQ1 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Metallophosphoesterase domain (IPR004843),Phosphoesterase At2g46880 (IPR011230);NIAS_FLcDNA=J033067A21;Expression=AK073741;TENOR=Os09t0533300-01;KEGG=Os09t0533300-01
Chr09	irgsp1_rep	five_prime_UTR	20942494	20942536	.	+	.	Parent=Os09t0533300-01
Chr09	irgsp1_rep	CDS	20942537	20942852	.	+	0	Parent=Os09t0533300-01
Chr09	irgsp1_rep	CDS	20944292	20944683	.	+	2	Parent=Os09t0533300-01
Chr09	irgsp1_rep	CDS	20944772	20945222	.	+	0	Parent=Os09t0533300-01
Chr09	irgsp1_rep	CDS	20945607	20945644	.	+	2	Parent=Os09t0533300-01
Chr09	irgsp1_rep	three_prime_UTR	20945645	20945847	.	+	.	Parent=Os09t0533300-01
Chr09	irgsp1_rep	mRNA	20946004	20948006	.	-	.	ID=Os09t0533400-01;Name=Os09t0533400-01;Locus_id=Os09g0533400;Oryzabase Gene Symbol Synonym(s)=OsLon1%2C LON1%2C OsLonP4%2C LONP4%2C LON2;Oryzabase Gene Name Synonym(s)=Lon protease 1%2C Lon protease 4%2C LON PROTEASE 2;Note=Similar to Lon protease homolog.;Transcript_evidence=AK119169 (DDBJ%2C Best hit),AK061670 (DDBJ%2C Best hit);ORF_evidence=B8BDV1 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: ATP-dependent peptidase activity (GO:0004176),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S16%2C active site (IPR008268),Peptidase S16%2C Lon C-terminal (IPR008269),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=001-036-G01,001-036-G02;Oryzabase=14677;Expression=AK119169;TENOR=Os09t0533400-01;KEGG=Os09t0533400-01 (EC:3.4.21.53)
Chr09	irgsp1_rep	five_prime_UTR	20948006	20948006	.	-	.	Parent=Os09t0533400-01
Chr09	irgsp1_rep	CDS	20947736	20948005	.	-	0	Parent=Os09t0533400-01
Chr09	irgsp1_rep	CDS	20947435	20947629	.	-	0	Parent=Os09t0533400-01
Chr09	irgsp1_rep	CDS	20946976	20947221	.	-	0	Parent=Os09t0533400-01
Chr09	irgsp1_rep	CDS	20946758	20946859	.	-	0	Parent=Os09t0533400-01
Chr09	irgsp1_rep	CDS	20946405	20946488	.	-	0	Parent=Os09t0533400-01
Chr09	irgsp1_rep	three_prime_UTR	20946004	20946404	.	-	.	Parent=Os09t0533400-01
Chr09	irgsp1_rep	mRNA	20962267	20967452	.	-	.	ID=Os09t0533600-01;Name=Os09t0533600-01;Locus_id=Os09g0533600;RAP-DB Gene Symbol Synonym(s)=BSR1;RAP-DB Gene Name Synonym(s)=Broad-Spectrum Resistance 1;CGSNL Gene Symbol=BSR1;CGSNL Gene Name=BROAD-SPECTRUM RESISTANCE 1;Oryzabase Gene Symbol Synonym(s)=OsRLCK278%2C RLCK278;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 278;Note=Receptor-like cytoplasmic kinase%2C Resistance to multiple bacterial and fungal pathogens;Transcript_evidence=AK070024;ORF_evidence=Q69SG8;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),Protein kinase domain (IPR000719),Serine-threonine/tyrosine-protein kinase%2C catalytic domain (IPR001245),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J023038G05;Manual Curation=December 11%2C 2018;Literature_PMID=30222251,20955180;Oryzabase=8864;Expression=AK070024;TENOR=Os09t0533600-01;KEGG=Os09t0533600-01;Subcellular location=plasma membrane (GO:0005886) [mainly], cytoplasm (GO:0005737)
Chr09	irgsp1_rep	five_prime_UTR	20967421	20967452	.	-	.	Parent=Os09t0533600-01
Chr09	irgsp1_rep	CDS	20967028	20967420	.	-	0	Parent=Os09t0533600-01
Chr09	irgsp1_rep	CDS	20964906	20965163	.	-	0	Parent=Os09t0533600-01
Chr09	irgsp1_rep	CDS	20964095	20964217	.	-	0	Parent=Os09t0533600-01
Chr09	irgsp1_rep	CDS	20962453	20962899	.	-	0	Parent=Os09t0533600-01
Chr09	irgsp1_rep	three_prime_UTR	20962267	20962452	.	-	.	Parent=Os09t0533600-01
Chr09	irgsp1_rep	mRNA	20962396	20964413	.	+	.	ID=Os09t0533650-01;Name=Os09t0533650-01;Locus_id=Os09g0533650;Note=Conserved hypothetical protein.;Transcript_evidence=AK241566 (DDBJ%2C Best hit);ORF_evidence=NP_001175955.1 (RefSeq);NIAS_FLcDNA=J065179B13;TENOR=Os09t0533650-01;KEGG=Os09t0533650-01
Chr09	irgsp1_rep	five_prime_UTR	20962396	20962588	.	+	.	Parent=Os09t0533650-01
Chr09	irgsp1_rep	CDS	20962589	20962867	.	+	0	Parent=Os09t0533650-01
Chr09	irgsp1_rep	three_prime_UTR	20962868	20962884	.	+	.	Parent=Os09t0533650-01
Chr09	irgsp1_rep	three_prime_UTR	20963724	20964413	.	+	.	Parent=Os09t0533650-01
Chr09	irgsp1_rep	mRNA	20973802	20975190	.	-	.	ID=Os09t0533800-00;Name=Os09t0533800-00;Locus_id=Os09g0533800;Oryzabase Gene Symbol Synonym(s)=OsSTA232;Note=Similar to Receptor expression-enhancing protein 3.;Transcript_evidence=AK375222 (DDBJ);ORF_evidence=B6TB01 (UniProt);InterPro=TB2/DP1/HVA22-related protein (IPR004345);Oryzabase=19504;TENOR=Os09t0533800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	20974997	20975190	.	-	0	Parent=Os09t0533800-00
Chr09	irgsp1_rep	CDS	20974781	20974901	.	-	1	Parent=Os09t0533800-00
Chr09	irgsp1_rep	CDS	20973802	20974038	.	-	0	Parent=Os09t0533800-00
Chr09	irgsp1_rep	mRNA	20976451	20980651	.	-	.	ID=Os09t0533900-01;Name=Os09t0533900-01;Locus_id=Os09g0533900;CGSNL Gene Symbol=GH9B5;Oryzabase Gene Symbol Synonym(s)=OsGH9B5;Oryzabase Gene Name Synonym(s)=glycoside hydrolase OsGH9B5%2C glycoside hydrolase 9B5;Note=Similar to CEL5%3DCELLULASE 5 (Fragment).;Transcript_evidence=AK100449 (DDBJ%2C Best hit);ORF_evidence=E7CQZ8 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 9 (IPR001701),Six-hairpin glycosidase-like (IPR008928),Six-hairpin glycosidase (IPR012341);NIAS_FLcDNA=J023090P12;Oryzabase=11705;Expression=AK100449;TENOR=Os09t0533900-01;KEGG=Os09t0533900-01
Chr09	irgsp1_rep	five_prime_UTR	20980553	20980651	.	-	.	Parent=Os09t0533900-01
Chr09	irgsp1_rep	CDS	20980333	20980552	.	-	0	Parent=Os09t0533900-01
Chr09	irgsp1_rep	CDS	20979393	20979676	.	-	2	Parent=Os09t0533900-01
Chr09	irgsp1_rep	CDS	20978161	20978598	.	-	0	Parent=Os09t0533900-01
Chr09	irgsp1_rep	CDS	20977865	20978012	.	-	0	Parent=Os09t0533900-01
Chr09	irgsp1_rep	CDS	20977513	20977679	.	-	2	Parent=Os09t0533900-01
Chr09	irgsp1_rep	CDS	20976894	20977223	.	-	0	Parent=Os09t0533900-01
Chr09	irgsp1_rep	three_prime_UTR	20976451	20976893	.	-	.	Parent=Os09t0533900-01
Chr09	irgsp1_rep	mRNA	20976449	20980609	.	-	.	ID=Os09t0533900-02;Name=Os09t0533900-02;Locus_id=Os09g0533900;CGSNL Gene Symbol=GH9B5;Oryzabase Gene Symbol Synonym(s)=OsGH9B5;Oryzabase Gene Name Synonym(s)=glycoside hydrolase OsGH9B5%2C glycoside hydrolase 9B5;Note=Similar to CEL5%3DCELLULASE 5 (Fragment).;Transcript_evidence=AK067774 (DDBJ%2C Best hit);ORF_evidence=E7CQZ8 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 9 (IPR001701),Six-hairpin glycosidase-like (IPR008928),Six-hairpin glycosidase (IPR012341);NIAS_FLcDNA=J013116J08;Oryzabase=11705;TENOR=Os09t0533900-02
Chr09	irgsp1_rep	five_prime_UTR	20980553	20980609	.	-	.	Parent=Os09t0533900-02
Chr09	irgsp1_rep	CDS	20980333	20980552	.	-	0	Parent=Os09t0533900-02
Chr09	irgsp1_rep	CDS	20979393	20979676	.	-	2	Parent=Os09t0533900-02
Chr09	irgsp1_rep	CDS	20978161	20978598	.	-	0	Parent=Os09t0533900-02
Chr09	irgsp1_rep	CDS	20977865	20978012	.	-	0	Parent=Os09t0533900-02
Chr09	irgsp1_rep	CDS	20977513	20977679	.	-	2	Parent=Os09t0533900-02
Chr09	irgsp1_rep	CDS	20976894	20977223	.	-	0	Parent=Os09t0533900-02
Chr09	irgsp1_rep	three_prime_UTR	20976449	20976893	.	-	.	Parent=Os09t0533900-02
Chr09	irgsp1_rep	mRNA	20983758	20986379	.	-	.	ID=Os09t0534000-01;Name=Os09t0534000-01;Locus_id=Os09g0534000;Note=Adipose-regulatory protein%2C Seipin domain containing protein.;Transcript_evidence=AK100026 (DDBJ%2C Best hit);ORF_evidence=A3C0Y5 (UniProt);InterPro=Adipose-regulatory protein%2C Seipin (IPR009617);NIAS_FLcDNA=J013146I06;Expression=AK100026;TENOR=Os09t0534000-01;KEGG=Os09t0534000-01
Chr09	irgsp1_rep	five_prime_UTR	20986248	20986379	.	-	.	Parent=Os09t0534000-01
Chr09	irgsp1_rep	CDS	20985321	20986247	.	-	0	Parent=Os09t0534000-01
Chr09	irgsp1_rep	CDS	20983817	20984263	.	-	0	Parent=Os09t0534000-01
Chr09	irgsp1_rep	three_prime_UTR	20983758	20983816	.	-	.	Parent=Os09t0534000-01
Chr09	irgsp1_rep	mRNA	20988362	20992532	.	+	.	ID=Os09t0534200-00;Name=Os09t0534200-00;Locus_id=Os09g0534200;Oryzabase Gene Symbol Synonym(s)=OsGL1B%2C GL1B;Oryzabase Gene Name Synonym(s)=GLABRA1B%2C GLABRA 1B;Note=Similar to ER lumen protein retaining receptor C28H8.4.;Transcript_evidence=EU967018 (DDBJ);ORF_evidence=B4FK71 (UniProt);GO=Biological Process: protein retention in ER lumen (GO:0006621),Cellular Component: integral to membrane (GO:0016021),Molecular Function: ER retention sequence binding (GO:0046923);InterPro=ER lumen protein retaining receptor (IPR000133);Oryzabase=20921;TENOR=Os09t0534200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	20988362	20988416	.	+	.	Parent=Os09t0534200-00
Chr09	irgsp1_rep	CDS	20988417	20988639	.	+	0	Parent=Os09t0534200-00
Chr09	irgsp1_rep	CDS	20990397	20990596	.	+	2	Parent=Os09t0534200-00
Chr09	irgsp1_rep	CDS	20991179	20991319	.	+	0	Parent=Os09t0534200-00
Chr09	irgsp1_rep	CDS	20991388	20991468	.	+	0	Parent=Os09t0534200-00
Chr09	irgsp1_rep	CDS	20991957	20992081	.	+	0	Parent=Os09t0534200-00
Chr09	irgsp1_rep	CDS	20992156	20992204	.	+	1	Parent=Os09t0534200-00
Chr09	irgsp1_rep	three_prime_UTR	20992205	20992532	.	+	.	Parent=Os09t0534200-00
Chr09	irgsp1_rep	mRNA	21012724	21017668	.	+	.	ID=Os09t0534600-01;Name=Os09t0534600-01;Locus_id=Os09g0534600;RAP-DB Gene Symbol Synonym(s)=OsHSP50.2;CGSNL Gene Symbol=HSP50.2;CGSNL Gene Name=50.2 KDA CLASS I HEAT SHOCK PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsHsp50.2%2C OsHSP50.2;Oryzabase Gene Name Synonym(s)=50.2 kDa heat shock protein%2C 50.2-kD heat shock protein;Note=Heat-shock protein%2C HSP90 family protein%2C Positive regulation of drought stress tolerance;Transcript_evidence=AK065528;ORF_evidence=A0A0P0XPT3;GO=Biological Process: protein folding (GO:0006457),Biological Process: response to stress (GO:0006950),Molecular Function: ATP binding (GO:0005524),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein Hsp90 family (IPR001404);NIAS_FLcDNA=J013031D07;Manual Curation=August 17%2C 2018;Literature_PMID=30099612;Oryzabase=11896;TENOR=Os09t0534600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	21012724	21012940	.	+	.	Parent=Os09t0534600-01
Chr09	irgsp1_rep	five_prime_UTR	21013393	21013563	.	+	.	Parent=Os09t0534600-01
Chr09	irgsp1_rep	CDS	21013564	21013686	.	+	0	Parent=Os09t0534600-01
Chr09	irgsp1_rep	CDS	21013760	21013921	.	+	0	Parent=Os09t0534600-01
Chr09	irgsp1_rep	CDS	21013996	21014121	.	+	0	Parent=Os09t0534600-01
Chr09	irgsp1_rep	CDS	21014220	21014289	.	+	0	Parent=Os09t0534600-01
Chr09	irgsp1_rep	CDS	21014385	21014575	.	+	2	Parent=Os09t0534600-01
Chr09	irgsp1_rep	CDS	21014647	21014715	.	+	0	Parent=Os09t0534600-01
Chr09	irgsp1_rep	CDS	21014787	21014912	.	+	0	Parent=Os09t0534600-01
Chr09	irgsp1_rep	CDS	21015271	21015699	.	+	0	Parent=Os09t0534600-01
Chr09	irgsp1_rep	three_prime_UTR	21015700	21016708	.	+	.	Parent=Os09t0534600-01
Chr09	irgsp1_rep	three_prime_UTR	21016796	21016917	.	+	.	Parent=Os09t0534600-01
Chr09	irgsp1_rep	three_prime_UTR	21017046	21017086	.	+	.	Parent=Os09t0534600-01
Chr09	irgsp1_rep	three_prime_UTR	21017183	21017280	.	+	.	Parent=Os09t0534600-01
Chr09	irgsp1_rep	three_prime_UTR	21017419	21017668	.	+	.	Parent=Os09t0534600-01
Chr09	irgsp1_rep	mRNA	21017916	21018242	.	+	.	ID=Os09t0534650-00;Name=Os09t0534650-00;Locus_id=Os09g0534650;Note=Non-protein coding transcript.;Transcript_evidence=BT042525 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0534650-00
Chr09	irgsp1_rep	exon	21017916	21018018	.	+	.	Parent=Os09t0534650-00
Chr09	irgsp1_rep	exon	21018076	21018242	.	+	.	Parent=Os09t0534650-00
Chr09	irgsp1_rep	mRNA	21028973	21031996	.	+	.	ID=Os09t0534800-01;Name=Os09t0534800-01;Locus_id=Os09g0534800;Oryzabase Gene Symbol Synonym(s)=OsTFIIB;Oryzabase Gene Name Synonym(s)=transcription factor IIB;Note=Transcription initiation factor IIB (General transcription factor TFIIB).;Transcript_evidence=AK068941 (DDBJ%2C Best hit);ORF_evidence=Q8W0W3 (UniProt);GO=Biological Process: transcription initiation%2C DNA-dependent (GO:0006352),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: translational initiation (GO:0006413),Molecular Function: translation initiation factor activity (GO:0003743),Molecular Function: zinc ion binding (GO:0008270);InterPro=Transcription factor TFIIB (IPR000812),Zinc finger%2C TFIIB-type (IPR013137),Transcription factor TFIIB%2C cyclin-related (IPR013150),Cyclin-like (IPR013763),Transcription factor TFIIB%2C conserved site (IPR023486);NIAS_FLcDNA=J013170A08;Oryzabase=13910;Expression=AK068941;TENOR=Os09t0534800-01;KEGG=Os09t0534800-01
Chr09	irgsp1_rep	five_prime_UTR	21028973	21029076	.	+	.	Parent=Os09t0534800-01
Chr09	irgsp1_rep	CDS	21029077	21029429	.	+	0	Parent=Os09t0534800-01
Chr09	irgsp1_rep	CDS	21030264	21030288	.	+	1	Parent=Os09t0534800-01
Chr09	irgsp1_rep	CDS	21030611	21030740	.	+	0	Parent=Os09t0534800-01
Chr09	irgsp1_rep	CDS	21030834	21030964	.	+	2	Parent=Os09t0534800-01
Chr09	irgsp1_rep	CDS	21031047	21031135	.	+	0	Parent=Os09t0534800-01
Chr09	irgsp1_rep	CDS	21031520	21031596	.	+	1	Parent=Os09t0534800-01
Chr09	irgsp1_rep	CDS	21031672	21031805	.	+	2	Parent=Os09t0534800-01
Chr09	irgsp1_rep	three_prime_UTR	21031806	21031996	.	+	.	Parent=Os09t0534800-01
Chr09	irgsp1_rep	mRNA	21030893	21031936	.	+	.	ID=Os09t0534800-02;Name=Os09t0534800-02;Locus_id=Os09g0534800;Oryzabase Gene Symbol Synonym(s)=OsTFIIB;Oryzabase Gene Name Synonym(s)=transcription factor IIB;Note=Similar to Transcription initiation factor IIB.;Transcript_evidence=AK058238 (DDBJ%2C Best hit);ORF_evidence=Q8W0W3 (UniProt);GO=Biological Process: transcription initiation%2C DNA-dependent (GO:0006352),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: translational initiation (GO:0006413),Molecular Function: translation initiation factor activity (GO:0003743),Molecular Function: zinc ion binding (GO:0008270);InterPro=Transcription factor TFIIB (IPR000812),Transcription factor TFIIB%2C cyclin-related (IPR013150),Cyclin-like (IPR013763);NIAS_FLcDNA=001-011-F06;Oryzabase=13910;Expression=AK058238;TENOR=Os09t0534800-02;KEGG=Os09t0534800-02
Chr09	irgsp1_rep	CDS	21030893	21030964	.	+	0	Parent=Os09t0534800-02
Chr09	irgsp1_rep	CDS	21031047	21031135	.	+	0	Parent=Os09t0534800-02
Chr09	irgsp1_rep	CDS	21031520	21031596	.	+	1	Parent=Os09t0534800-02
Chr09	irgsp1_rep	CDS	21031672	21031805	.	+	2	Parent=Os09t0534800-02
Chr09	irgsp1_rep	three_prime_UTR	21031806	21031936	.	+	.	Parent=Os09t0534800-02
Chr09	irgsp1_rep	mRNA	21033103	21036506	.	-	.	ID=Os09t0535000-01;Name=Os09t0535000-01;Locus_id=Os09g0535000;Oryzabase Gene Name Synonym(s)=Triose phosphate isomerase;Note=Similar to Triosephosphate isomerase.;Transcript_evidence=AK069488 (DDBJ%2C Best hit);ORF_evidence=A2Z3G7 (UniProt);NIAS_FLcDNA=J023021B06;Oryzabase=12455;Expression=AK069488;TENOR=Os09t0535000-01;KEGG=Os09t0535000-01 (EC:5.3.1.1)
Chr09	irgsp1_rep	five_prime_UTR	21036343	21036506	.	-	.	Parent=Os09t0535000-01
Chr09	irgsp1_rep	CDS	21036181	21036342	.	-	0	Parent=Os09t0535000-01
Chr09	irgsp1_rep	CDS	21035979	21036062	.	-	0	Parent=Os09t0535000-01
Chr09	irgsp1_rep	three_prime_UTR	21035228	21035978	.	-	.	Parent=Os09t0535000-01
Chr09	irgsp1_rep	three_prime_UTR	21034920	21035043	.	-	.	Parent=Os09t0535000-01
Chr09	irgsp1_rep	three_prime_UTR	21034619	21034703	.	-	.	Parent=Os09t0535000-01
Chr09	irgsp1_rep	three_prime_UTR	21034320	21034452	.	-	.	Parent=Os09t0535000-01
Chr09	irgsp1_rep	three_prime_UTR	21034054	21034227	.	-	.	Parent=Os09t0535000-01
Chr09	irgsp1_rep	three_prime_UTR	21033612	21033694	.	-	.	Parent=Os09t0535000-01
Chr09	irgsp1_rep	three_prime_UTR	21033103	21033490	.	-	.	Parent=Os09t0535000-01
Chr09	irgsp1_rep	mRNA	21033111	21036395	.	-	.	ID=Os09t0535000-02;Name=Os09t0535000-02;Locus_id=Os09g0535000;Oryzabase Gene Name Synonym(s)=Triose phosphate isomerase;Note=Similar to Triosephosphate isomerase%2C chloroplast precursor (EC 5.3.1.1) (TIM) (Triose-phosphate isomerase).;Transcript_evidence=AK058712 (DDBJ%2C Best hit);ORF_evidence=A2Z3G7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: triose-phosphate isomerase activity (GO:0004807);InterPro=Triosephosphate isomerase (IPR000652),Aldolase-type TIM barrel (IPR013785),Triosephosphate isomerase%2C active site (IPR020861);NIAS_FLcDNA=001-019-D08;Oryzabase=12455;Expression=AK058712;TENOR=Os09t0535000-02;KEGG=Os09t0535000-02 (EC:5.3.1.1)
Chr09	irgsp1_rep	five_prime_UTR	21036343	21036395	.	-	.	Parent=Os09t0535000-02
Chr09	irgsp1_rep	CDS	21036181	21036342	.	-	0	Parent=Os09t0535000-02
Chr09	irgsp1_rep	CDS	21036036	21036062	.	-	0	Parent=Os09t0535000-02
Chr09	irgsp1_rep	CDS	21035228	21035297	.	-	0	Parent=Os09t0535000-02
Chr09	irgsp1_rep	CDS	21034920	21035043	.	-	2	Parent=Os09t0535000-02
Chr09	irgsp1_rep	CDS	21034619	21034703	.	-	1	Parent=Os09t0535000-02
Chr09	irgsp1_rep	CDS	21034320	21034452	.	-	0	Parent=Os09t0535000-02
Chr09	irgsp1_rep	CDS	21034054	21034227	.	-	2	Parent=Os09t0535000-02
Chr09	irgsp1_rep	CDS	21033612	21033694	.	-	2	Parent=Os09t0535000-02
Chr09	irgsp1_rep	CDS	21033434	21033490	.	-	0	Parent=Os09t0535000-02
Chr09	irgsp1_rep	three_prime_UTR	21033111	21033433	.	-	.	Parent=Os09t0535000-02
Chr09	irgsp1_rep	mRNA	21035384	21036340	.	-	.	ID=Os09t0535000-03;Name=Os09t0535000-03;Locus_id=Os09g0535000;Oryzabase Gene Name Synonym(s)=Triose phosphate isomerase;Note=Similar to Triosephosphate isomerase.;Transcript_evidence=AK069832 (DDBJ%2C Best hit);ORF_evidence=NP_001152578.1 (RefSeq);NIAS_FLcDNA=J023029E04;Oryzabase=12455;Expression=AK069832;TENOR=Os09t0535000-03;KEGG=Os09t0535000-03 (EC:5.3.1.1)
Chr09	irgsp1_rep	five_prime_UTR	21036340	21036340	.	-	.	Parent=Os09t0535000-03
Chr09	irgsp1_rep	CDS	21036181	21036339	.	-	0	Parent=Os09t0535000-03
Chr09	irgsp1_rep	CDS	21035979	21036062	.	-	0	Parent=Os09t0535000-03
Chr09	irgsp1_rep	three_prime_UTR	21035384	21035978	.	-	.	Parent=Os09t0535000-03
Chr09	irgsp1_rep	mRNA	21038124	21041593	.	+	.	ID=Os09t0535100-01;Name=Os09t0535100-01;Locus_id=Os09g0535100;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK069888 (DDBJ%2C Best hit);ORF_evidence=NP_001150748.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J023039O04;Expression=AK069888;TENOR=Os09t0535100-01;KEGG=Os09t0535100-01
Chr09	irgsp1_rep	five_prime_UTR	21038124	21038170	.	+	.	Parent=Os09t0535100-01
Chr09	irgsp1_rep	CDS	21038171	21038398	.	+	0	Parent=Os09t0535100-01
Chr09	irgsp1_rep	CDS	21038497	21038875	.	+	0	Parent=Os09t0535100-01
Chr09	irgsp1_rep	CDS	21038965	21039008	.	+	2	Parent=Os09t0535100-01
Chr09	irgsp1_rep	CDS	21039747	21039786	.	+	0	Parent=Os09t0535100-01
Chr09	irgsp1_rep	CDS	21039882	21040005	.	+	2	Parent=Os09t0535100-01
Chr09	irgsp1_rep	CDS	21040094	21040202	.	+	1	Parent=Os09t0535100-01
Chr09	irgsp1_rep	CDS	21041247	21041300	.	+	0	Parent=Os09t0535100-01
Chr09	irgsp1_rep	three_prime_UTR	21041301	21041593	.	+	.	Parent=Os09t0535100-01
Chr09	irgsp1_rep	mRNA	21046293	21050027	.	+	.	ID=Os09t0535200-01;Name=Os09t0535200-01;Locus_id=Os09g0535200;Note=Conserved hypothetical protein.;Transcript_evidence=AK110145 (DDBJ%2C Best hit);ORF_evidence=B8BDW0 (UniProt);NIAS_FLcDNA=002-161-D11;Expression=AK110145;TENOR=Os09t0535200-01;KEGG=Os09t0535200-01
Chr09	irgsp1_rep	five_prime_UTR	21046293	21047019	.	+	.	Parent=Os09t0535200-01
Chr09	irgsp1_rep	CDS	21047020	21049537	.	+	0	Parent=Os09t0535200-01
Chr09	irgsp1_rep	CDS	21049634	21049701	.	+	2	Parent=Os09t0535200-01
Chr09	irgsp1_rep	three_prime_UTR	21049702	21050027	.	+	.	Parent=Os09t0535200-01
Chr09	irgsp1_rep	mRNA	21050695	21053984	.	+	.	ID=Os09t0535300-01;Name=Os09t0535300-01;Locus_id=Os09g0535300;Note=XAP5 protein family protein.;Transcript_evidence=AK071211 (DDBJ%2C Best hit);ORF_evidence=Q69JZ7 (UniProt);GO=Cellular Component: nucleus (GO:0005634);InterPro=XAP5 protein (IPR007005);NIAS_FLcDNA=J023088M16;Expression=AK071211;TENOR=Os09t0535300-01;KEGG=Os09t0535300-01
Chr09	irgsp1_rep	five_prime_UTR	21050695	21050817	.	+	.	Parent=Os09t0535300-01
Chr09	irgsp1_rep	CDS	21050818	21050982	.	+	0	Parent=Os09t0535300-01
Chr09	irgsp1_rep	CDS	21051566	21051631	.	+	0	Parent=Os09t0535300-01
Chr09	irgsp1_rep	CDS	21051713	21051777	.	+	0	Parent=Os09t0535300-01
Chr09	irgsp1_rep	CDS	21051864	21051976	.	+	1	Parent=Os09t0535300-01
Chr09	irgsp1_rep	CDS	21052330	21052405	.	+	2	Parent=Os09t0535300-01
Chr09	irgsp1_rep	CDS	21052504	21052580	.	+	1	Parent=Os09t0535300-01
Chr09	irgsp1_rep	CDS	21052697	21052758	.	+	2	Parent=Os09t0535300-01
Chr09	irgsp1_rep	CDS	21052850	21052981	.	+	0	Parent=Os09t0535300-01
Chr09	irgsp1_rep	CDS	21053079	21053132	.	+	0	Parent=Os09t0535300-01
Chr09	irgsp1_rep	CDS	21053362	21053427	.	+	0	Parent=Os09t0535300-01
Chr09	irgsp1_rep	CDS	21053508	21053582	.	+	0	Parent=Os09t0535300-01
Chr09	irgsp1_rep	CDS	21053664	21053714	.	+	0	Parent=Os09t0535300-01
Chr09	irgsp1_rep	three_prime_UTR	21053715	21053984	.	+	.	Parent=Os09t0535300-01
Chr09	irgsp1_rep	mRNA	21054538	21055909	.	+	.	ID=Os09t0535400-00;Name=Os09t0535400-00;Locus_id=Os09g0535400;Note=Curculin-like (mannose-binding) lectin domain containing protein.;Transcript_evidence=EU972110 (DDBJ);ORF_evidence=NP_001151754.1 (RefSeq);TENOR=Os09t0535400-00;KEGG=Os09t0535400-00
Chr09	irgsp1_rep	five_prime_UTR	21054538	21054583	.	+	.	Parent=Os09t0535400-00
Chr09	irgsp1_rep	CDS	21054584	21055873	.	+	0	Parent=Os09t0535400-00
Chr09	irgsp1_rep	three_prime_UTR	21055874	21055909	.	+	.	Parent=Os09t0535400-00
Chr09	irgsp1_rep	mRNA	21056545	21057436	.	-	.	ID=Os09t0535500-01;Name=Os09t0535500-01;Locus_id=Os09g0535500;Note=Similar to RING-H2 finger protein ATL1R (RING-H2 finger protein ATL8).;Transcript_evidence=AK108282 (DDBJ%2C Best hit);ORF_evidence=NP_001150741.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=002-141-D02;Expression=AK108282;TENOR=Os09t0535500-01;KEGG=Os09t0535500-01
Chr09	irgsp1_rep	five_prime_UTR	21057412	21057436	.	-	.	Parent=Os09t0535500-01
Chr09	irgsp1_rep	CDS	21056758	21057411	.	-	0	Parent=Os09t0535500-01
Chr09	irgsp1_rep	three_prime_UTR	21056545	21056757	.	-	.	Parent=Os09t0535500-01
Chr09	irgsp1_rep	mRNA	21061222	21062698	.	-	.	ID=Os09t0535900-01;Name=Os09t0535900-01;Locus_id=Os09g0535900;Note=Similar to Ki1 protein.;Transcript_evidence=AK061726 (DDBJ%2C Best hit);ORF_evidence=E5GC05 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: intracellular signal transduction (GO:0035556),Molecular Function: phospholipase C activity (GO:0004629),Molecular Function: phosphoric diester hydrolase activity (GO:0008081);InterPro=Phospholipase C%2C phosphatidylinositol-specific %2C X domain (IPR000909),PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain (IPR017946);NIAS_FLcDNA=001-038-B04;Expression=AK061726;TENOR=Os09t0535900-01;KEGG=Os09t0535900-01
Chr09	irgsp1_rep	five_prime_UTR	21062479	21062698	.	-	.	Parent=Os09t0535900-01
Chr09	irgsp1_rep	CDS	21061465	21062478	.	-	0	Parent=Os09t0535900-01
Chr09	irgsp1_rep	three_prime_UTR	21061222	21061464	.	-	.	Parent=Os09t0535900-01
Chr09	irgsp1_rep	mRNA	21061256	21062468	.	-	.	ID=Os09t0535900-02;Name=Os09t0535900-02;Locus_id=Os09g0535900;Note=Similar to predicted protein.;Transcript_evidence=AK065856 (DDBJ%2C Best hit);ORF_evidence=E5GC05 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: intracellular signal transduction (GO:0035556),Molecular Function: phospholipase C activity (GO:0004629),Molecular Function: phosphoric diester hydrolase activity (GO:0008081);InterPro=Phospholipase C%2C phosphatidylinositol-specific %2C X domain (IPR000909),PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain (IPR017946);NIAS_FLcDNA=J013043D02;Expression=AK065856;TENOR=Os09t0535900-02;KEGG=Os09t0535900-02
Chr09	irgsp1_rep	five_prime_UTR	21062422	21062468	.	-	.	Parent=Os09t0535900-02
Chr09	irgsp1_rep	CDS	21061465	21062421	.	-	0	Parent=Os09t0535900-02
Chr09	irgsp1_rep	three_prime_UTR	21061256	21061464	.	-	.	Parent=Os09t0535900-02
Chr09	irgsp1_rep	mRNA	21064014	21068725	.	-	.	ID=Os09t0536000-01;Name=Os09t0536000-01;Locus_id=Os09g0536000;Oryzabase Gene Name Synonym(s)=AP endonuclease 2;Note=Exodeoxyribonuclease III xth family protein.;Transcript_evidence=AK103074 (DDBJ%2C Best hit);ORF_evidence=B8BDW2 (UniProt);GO=Biological Process: DNA repair (GO:0006281),Cellular Component: intracellular (GO:0005622),Molecular Function: DNA binding (GO:0003677),Molecular Function: nuclease activity (GO:0004518),Molecular Function: endonuclease activity (GO:0004519),Molecular Function: zinc ion binding (GO:0008270);InterPro=Exodeoxyribonuclease III xth (IPR004808),Endonuclease/exonuclease/phosphatase (IPR005135),Zinc finger%2C GRF-type (IPR010666),AP endonuclease%2C family 1%2C conserved site (IPR020848);NIAS_FLcDNA=J033118C13;Oryzabase=21282;Expression=AK103074;TENOR=Os09t0536000-01;KEGG=Os09t0536000-01 (EC:4.2.99.18)
Chr09	irgsp1_rep	five_prime_UTR	21068529	21068725	.	-	.	Parent=Os09t0536000-01
Chr09	irgsp1_rep	CDS	21068418	21068528	.	-	0	Parent=Os09t0536000-01
Chr09	irgsp1_rep	CDS	21067894	21068002	.	-	0	Parent=Os09t0536000-01
Chr09	irgsp1_rep	CDS	21067486	21067722	.	-	2	Parent=Os09t0536000-01
Chr09	irgsp1_rep	CDS	21067273	21067358	.	-	2	Parent=Os09t0536000-01
Chr09	irgsp1_rep	CDS	21066945	21067060	.	-	0	Parent=Os09t0536000-01
Chr09	irgsp1_rep	CDS	21066313	21066393	.	-	1	Parent=Os09t0536000-01
Chr09	irgsp1_rep	CDS	21065797	21065997	.	-	1	Parent=Os09t0536000-01
Chr09	irgsp1_rep	CDS	21065566	21065717	.	-	1	Parent=Os09t0536000-01
Chr09	irgsp1_rep	CDS	21064680	21065368	.	-	2	Parent=Os09t0536000-01
Chr09	irgsp1_rep	CDS	21064478	21064555	.	-	0	Parent=Os09t0536000-01
Chr09	irgsp1_rep	three_prime_UTR	21064441	21064477	.	-	.	Parent=Os09t0536000-01
Chr09	irgsp1_rep	three_prime_UTR	21064014	21064348	.	-	.	Parent=Os09t0536000-01
Chr09	irgsp1_rep	mRNA	21064649	21080332	.	+	.	ID=Os09t0536100-01;Name=Os09t0536100-01;Locus_id=Os09g0536100;Note=Hypothetical conserved gene.;Transcript_evidence=AK287745 (DDBJ%2C Best hit);ORF_evidence=Q69JZ0 (UniProt);NIAS_FLcDNA=J065149O08;TENOR=Os09t0536100-01;KEGG=Os09t0536100-01
Chr09	irgsp1_rep	five_prime_UTR	21064649	21065643	.	+	.	Parent=Os09t0536100-01
Chr09	irgsp1_rep	five_prime_UTR	21065863	21065897	.	+	.	Parent=Os09t0536100-01
Chr09	irgsp1_rep	CDS	21065898	21065982	.	+	0	Parent=Os09t0536100-01
Chr09	irgsp1_rep	CDS	21069633	21070048	.	+	2	Parent=Os09t0536100-01
Chr09	irgsp1_rep	three_prime_UTR	21070049	21070230	.	+	.	Parent=Os09t0536100-01
Chr09	irgsp1_rep	three_prime_UTR	21071975	21072040	.	+	.	Parent=Os09t0536100-01
Chr09	irgsp1_rep	three_prime_UTR	21079816	21080332	.	+	.	Parent=Os09t0536100-01
Chr09	irgsp1_rep	mRNA	21079280	21079336	.	+	.	ID=Os09t0536183-00;Name=Os09t0536183-00;Locus_id=Os09g0536183;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0536183-00
Chr09	irgsp1_rep	exon	21079280	21079336	.	+	.	Parent=Os09t0536183-00
Chr09	irgsp1_rep	mRNA	21082259	21084741	.	+	.	ID=Os09t0536200-00;Name=Os09t0536200-00;Locus_id=Os09g0536200;Note=Similar to ARO1-like protein 3.;Transcript_evidence=AK363399 (DDBJ);ORF_evidence=B7FF23 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);TENOR=Os09t0536200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	21082259	21082478	.	+	.	Parent=Os09t0536200-00
Chr09	irgsp1_rep	CDS	21082479	21084398	.	+	0	Parent=Os09t0536200-00
Chr09	irgsp1_rep	three_prime_UTR	21084399	21084741	.	+	.	Parent=Os09t0536200-00
Chr09	irgsp1_rep	mRNA	21088846	21089693	.	+	.	ID=Os09t0536300-00;Name=Os09t0536300-00;Locus_id=Os09g0536300;Note=Similar to thaumatin-like protein 1.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001151120.1 (RefSeq);InterPro=Thaumatin%2C pathogenesis-related (IPR001938),Thaumatin%2C conserved site (IPR017949);TENOR=Os09t0536300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	21088846	21088900	.	+	0	Parent=Os09t0536300-00
Chr09	irgsp1_rep	CDS	21088993	21089693	.	+	2	Parent=Os09t0536300-00
Chr09	irgsp1_rep	mRNA	21088965	21089677	.	-	.	ID=Os09t0536350-00;Name=Os09t0536350-00;Locus_id=Os09g0536350;Note=Hypothetical protein.;Transcript_evidence=EU967040 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0536350-00
Chr09	irgsp1_rep	five_prime_UTR	21089676	21089677	.	-	.	Parent=Os09t0536350-00
Chr09	irgsp1_rep	CDS	21088965	21089675	.	-	0	Parent=Os09t0536350-00
Chr09	irgsp1_rep	mRNA	21098267	21101192	.	+	.	ID=Os09t0536400-01;Name=Os09t0536400-01;Locus_id=Os09g0536400;Note=Similar to Thaumatin-like protein 1 precursor.;Transcript_evidence=AK068084 (DDBJ%2C Best hit);ORF_evidence=E5RDD8 (UniProt);InterPro=Thaumatin%2C pathogenesis-related (IPR001938),Thaumatin%2C conserved site (IPR017949);NIAS_FLcDNA=J013131N11;Expression=AK068084;TENOR=Os09t0536400-01;KEGG=Os09t0536400-01
Chr09	irgsp1_rep	five_prime_UTR	21098267	21098514	.	+	.	Parent=Os09t0536400-01
Chr09	irgsp1_rep	CDS	21098515	21098587	.	+	0	Parent=Os09t0536400-01
Chr09	irgsp1_rep	CDS	21098678	21099368	.	+	2	Parent=Os09t0536400-01
Chr09	irgsp1_rep	CDS	21100579	21100753	.	+	1	Parent=Os09t0536400-01
Chr09	irgsp1_rep	three_prime_UTR	21100754	21101192	.	+	.	Parent=Os09t0536400-01
Chr09	irgsp1_rep	mRNA	21098688	21099347	.	-	.	ID=Os09t0536550-00;Name=Os09t0536550-00;Locus_id=Os09g0536550;Note=Hypothetical protein.;Transcript_evidence=EU967040 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0536550-00
Chr09	irgsp1_rep	five_prime_UTR	21099142	21099347	.	-	.	Parent=Os09t0536550-00
Chr09	irgsp1_rep	CDS	21098689	21099141	.	-	0	Parent=Os09t0536550-00
Chr09	irgsp1_rep	three_prime_UTR	21098688	21098688	.	-	.	Parent=Os09t0536550-00
Chr09	irgsp1_rep	mRNA	21110946	21114330	.	-	.	ID=Os09t0536700-01;Name=Os09t0536700-01;Locus_id=Os09g0536700;CGSNL Gene Symbol=MFS5;CGSNL Gene Name=MAJOR FACILITATOR SUPERFAMILY 5;Oryzabase Gene Symbol Synonym(s)=OsMFS5;Oryzabase Gene Name Synonym(s)=major facilitator superfamily 5;Note=Similar to predicted protein.;Transcript_evidence=AK072288 (DDBJ%2C Best hit),AK105374 (DDBJ%2C Best hit);ORF_evidence=XP_002886064.1 (RefSeq);InterPro=Nodulin-like (IPR010658),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J023012O05,001-120-D05;Oryzabase=21388;Expression=AK072288;TENOR=Os09t0536700-01;KEGG=Os09t0536700-01
Chr09	irgsp1_rep	five_prime_UTR	21114084	21114330	.	-	.	Parent=Os09t0536700-01
Chr09	irgsp1_rep	CDS	21112785	21114083	.	-	0	Parent=Os09t0536700-01
Chr09	irgsp1_rep	three_prime_UTR	21110946	21112784	.	-	.	Parent=Os09t0536700-01
Chr09	irgsp1_rep	mRNA	21110946	21114327	.	-	.	ID=Os09t0536700-02;Name=Os09t0536700-02;Locus_id=Os09g0536700;CGSNL Gene Symbol=MFS5;CGSNL Gene Name=MAJOR FACILITATOR SUPERFAMILY 5;Oryzabase Gene Symbol Synonym(s)=OsMFS5;Oryzabase Gene Name Synonym(s)=major facilitator superfamily 5;Note=Nodulin-like domain containing protein.;Transcript_evidence=AK099869 (DDBJ%2C Best hit);ORF_evidence=B7EKL1 (UniProt);InterPro=Nodulin-like (IPR010658),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J013111E22;Oryzabase=21388;Expression=AK099869;TENOR=Os09t0536700-02;KEGG=Os09t0536700-02
Chr09	irgsp1_rep	five_prime_UTR	21114084	21114327	.	-	.	Parent=Os09t0536700-02
Chr09	irgsp1_rep	CDS	21112903	21114083	.	-	0	Parent=Os09t0536700-02
Chr09	irgsp1_rep	CDS	21111344	21111821	.	-	1	Parent=Os09t0536700-02
Chr09	irgsp1_rep	three_prime_UTR	21110946	21111343	.	-	.	Parent=Os09t0536700-02
Chr09	irgsp1_rep	mRNA	21112419	21114635	.	+	.	ID=Os09t0536800-01;Name=Os09t0536800-01;Locus_id=Os09g0536800;Note=Hypothetical protein.;Transcript_evidence=AK106320 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-101-E07;Expression=AK106320;TENOR=Os09t0536800-01;KEGG=Os09t0536800-01
Chr09	irgsp1_rep	five_prime_UTR	21112419	21112883	.	+	.	Parent=Os09t0536800-01
Chr09	irgsp1_rep	CDS	21112884	21114359	.	+	0	Parent=Os09t0536800-01
Chr09	irgsp1_rep	three_prime_UTR	21114360	21114635	.	+	.	Parent=Os09t0536800-01
Chr09	irgsp1_rep	mRNA	21131907	21134239	.	-	.	ID=Os09t0537000-01;Name=Os09t0537000-01;Locus_id=Os09g0537000;Note=Hypothetical protein.;Transcript_evidence=AK066008 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013044G18;Expression=AK066008;TENOR=Os09t0537000-01;KEGG=Os09t0537000-01
Chr09	irgsp1_rep	five_prime_UTR	21133723	21134239	.	-	.	Parent=Os09t0537000-01
Chr09	irgsp1_rep	five_prime_UTR	21133391	21133625	.	-	.	Parent=Os09t0537000-01
Chr09	irgsp1_rep	CDS	21132923	21133390	.	-	0	Parent=Os09t0537000-01
Chr09	irgsp1_rep	three_prime_UTR	21131907	21132922	.	-	.	Parent=Os09t0537000-01
Chr09	irgsp1_rep	mRNA	21132791	21134350	.	+	.	ID=Os09t0537100-01;Name=Os09t0537100-01;Locus_id=Os09g0537100;Note=Conserved hypothetical protein.;Transcript_evidence=AK072188 (DDBJ%2C Best hit);ORF_evidence=B9G4S8 (UniProt);NIAS_FLcDNA=J013146K22;TENOR=Os09t0537100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	21132791	21133022	.	+	.	Parent=Os09t0537100-01
Chr09	irgsp1_rep	CDS	21133023	21133460	.	+	0	Parent=Os09t0537100-01
Chr09	irgsp1_rep	three_prime_UTR	21133461	21134350	.	+	.	Parent=Os09t0537100-01
Chr09	irgsp1_rep	mRNA	21134490	21136784	.	+	.	ID=Os09t0537200-01;Name=Os09t0537200-01;Locus_id=Os09g0537200;Note=Conserved hypothetical protein.;Transcript_evidence=AK100556 (DDBJ%2C Best hit);ORF_evidence=B8BDX2 (UniProt);NIAS_FLcDNA=J023104B14;Expression=AK100556;TENOR=Os09t0537200-01;KEGG=Os09t0537200-01
Chr09	irgsp1_rep	five_prime_UTR	21134490	21134705	.	+	.	Parent=Os09t0537200-01
Chr09	irgsp1_rep	CDS	21134706	21136466	.	+	0	Parent=Os09t0537200-01
Chr09	irgsp1_rep	three_prime_UTR	21136467	21136784	.	+	.	Parent=Os09t0537200-01
Chr09	irgsp1_rep	mRNA	21151781	21154287	.	+	.	ID=Os09t0537600-01;Name=Os09t0537600-01;Locus_id=Os09g0537600;RAP-DB Gene Symbol Synonym(s)=OsCYP21-1;RAP-DB Gene Name Synonym(s)=cyclophilin 21-1;CGSNL Gene Symbol=CYP21-1;CGSNL Gene Name=CYCLOPHILIN 21-1;Oryzabase Gene Symbol Synonym(s)=OsCYP21-1%2C OsCYP-24;Oryzabase Gene Name Synonym(s)=cyclophilin 21-1%2C cyclophilin 24;Note=Cyclophilin 21 protein%2C Peptidyl prolyl cis-trans isomerase (PPIase) activity%2C Negative regulation of ABA signalling%2C Regulation of seed germination and seedling growth and development;Transcript_evidence=AK061004;ORF_evidence=Q69JF7;GO=Biological Process: protein peptidyl-prolyl isomerization (GO:0000413),Biological Process: protein folding (GO:0006457),Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);InterPro=Cyclophilin-like domain superfamily (IPR029000),Cyclophilin-type peptidyl-prolyl cis-trans isomerase (IPR024936),Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain (IPR002130),Cyclophilin-type peptidyl-prolyl cis-trans isomerase%2C conserved site (IPR020892);NIAS_FLcDNA=006-203-H04;Manual Curation=December 3%2C 2019;Literature_PMID=31786704;Oryzabase=10062;Expression=AK061004;TENOR=Os09t0537600-01;KEGG=Os09t0537600-01 (EC:5.2.1.8);Subcellular location=Golgi cis cisternae (GO:0000137), Golgi trans cisternae (GO:0000138)
Chr09	irgsp1_rep	five_prime_UTR	21151781	21151927	.	+	.	Parent=Os09t0537600-01
Chr09	irgsp1_rep	CDS	21151928	21152005	.	+	0	Parent=Os09t0537600-01
Chr09	irgsp1_rep	CDS	21152651	21152726	.	+	0	Parent=Os09t0537600-01
Chr09	irgsp1_rep	CDS	21152867	21152914	.	+	2	Parent=Os09t0537600-01
Chr09	irgsp1_rep	CDS	21153151	21153174	.	+	2	Parent=Os09t0537600-01
Chr09	irgsp1_rep	CDS	21153268	21153450	.	+	2	Parent=Os09t0537600-01
Chr09	irgsp1_rep	CDS	21153628	21153703	.	+	2	Parent=Os09t0537600-01
Chr09	irgsp1_rep	CDS	21153778	21153940	.	+	1	Parent=Os09t0537600-01
Chr09	irgsp1_rep	three_prime_UTR	21153941	21154287	.	+	.	Parent=Os09t0537600-01
Chr09	irgsp1_rep	mRNA	21151782	21154358	.	+	.	ID=Os09t0537600-02;Name=Os09t0537600-02;Locus_id=Os09g0537600;CGSNL Gene Symbol=CYP21-1;CGSNL Gene Name=CYCLOPHILIN 21-1;Oryzabase Gene Symbol Synonym(s)=OsCYP21-1%2C OsCYP-24;Oryzabase Gene Name Synonym(s)=cyclophilin 21-1%2C cyclophilin 24;Note=Similar to Peptidyl-prolyl cis-trans isomerase.;Transcript_evidence=AK070944 (DDBJ%2C Best hit);ORF_evidence=B8BDX4 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);InterPro=Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type (IPR002130),Cyclophilin-like (IPR015891),Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type%2C conserved site (IPR020892);NIAS_FLcDNA=J023066C07;Oryzabase=10062;TENOR=Os09t0537600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	21151782	21153212	.	+	.	Parent=Os09t0537600-02
Chr09	irgsp1_rep	CDS	21153213	21153450	.	+	0	Parent=Os09t0537600-02
Chr09	irgsp1_rep	CDS	21153628	21153703	.	+	2	Parent=Os09t0537600-02
Chr09	irgsp1_rep	CDS	21153778	21153940	.	+	1	Parent=Os09t0537600-02
Chr09	irgsp1_rep	three_prime_UTR	21153941	21154358	.	+	.	Parent=Os09t0537600-02
Chr09	irgsp1_rep	mRNA	21155963	21157945	.	-	.	ID=Os09t0537700-02;Name=Os09t0537700-02;Locus_id=Os09g0537700;RAP-DB Gene Symbol Synonym(s)=RNS4%2C OsRNS4%2C OsRRP%2C RNaseDIS;RAP-DB Gene Name Synonym(s)=RIBONUCLEASE 4%2C RNase 4%2C RNase-related protein%2C drought-induced S-like RNase%2C RNase DIS%2C drought induced S-like RNase homologue;CGSNL Gene Symbol=RNS4;CGSNL Gene Name=RIBONUCLEASE 4;Oryzabase Gene Symbol Synonym(s)=OsRNS4%2C OsRRP%2C RNaseDIS;Oryzabase Gene Name Synonym(s)=RNase 4%2C RNase-related protein%2C drought-induced S-like RNase%2C RNase DIS%2C drought induced S-like RNase homologue;Note=S-like ribonuclease%2C Salinity tolerance%2C Abiotic stress response%2C Regulation of photomorphogenesis;Transcript_evidence=AK061438,AK098949,AK104221,AK104454,AK104509,AK104553,AK104599,AK104656,AK104888,AK119186;ORF_evidence=Q69JX7;GO=Molecular Function: RNA binding (GO:0003723),Molecular Function: ribonuclease T2 activity (GO:0033897);InterPro=Ribonuclease T2-like (IPR001568),Ribonuclease T2%2C eukaryotic (IPR033697);NIAS_FLcDNA=006-307-B06, J013057M18, 006-306-E03, 006-301-A06, 006-302-G12, 006-305-E10, 006-308-G01, 006-311-C11, 001-045-B11, 001-039-G06;Manual Curation=January 17%2C 2017;Literature_PMID=24268167,16636480;Oryzabase=13016;Expression=AK104221;TENOR=Os09t0537700-02;KEGG=Os09t0537700-02;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	21157891	21157945	.	-	.	Parent=Os09t0537700-02
Chr09	irgsp1_rep	CDS	21157777	21157890	.	-	0	Parent=Os09t0537700-02
Chr09	irgsp1_rep	CDS	21156900	21157061	.	-	0	Parent=Os09t0537700-02
Chr09	irgsp1_rep	CDS	21156624	21156816	.	-	0	Parent=Os09t0537700-02
Chr09	irgsp1_rep	CDS	21156221	21156510	.	-	2	Parent=Os09t0537700-02
Chr09	irgsp1_rep	three_prime_UTR	21155963	21156220	.	-	.	Parent=Os09t0537700-02
Chr09	irgsp1_rep	mRNA	21165241	21167647	.	-	.	ID=Os09t0538000-01;Name=Os09t0538000-01;Locus_id=Os09g0538000;CGSNL Gene Symbol=RNS5;CGSNL Gene Name=RIBONUCLEASE 5;Oryzabase Gene Symbol Synonym(s)=OsRNS5;Oryzabase Gene Name Synonym(s)=RNase 5;Note=Ribonuclease T2 family protein.;Transcript_evidence=AK060036 (DDBJ%2C Best hit);ORF_evidence=A6MZT8 (UniProt);GO=Molecular Function: RNA binding (GO:0003723),Molecular Function: ribonuclease T2 activity (GO:0033897);InterPro=Ribonuclease T2 (IPR001568);NIAS_FLcDNA=006-304-A10;Oryzabase=13017;Expression=AK060036;TENOR=Os09t0538000-01;KEGG=Os09t0538000-01
Chr09	irgsp1_rep	five_prime_UTR	21167580	21167647	.	-	.	Parent=Os09t0538000-01
Chr09	irgsp1_rep	CDS	21167466	21167579	.	-	0	Parent=Os09t0538000-01
Chr09	irgsp1_rep	CDS	21166642	21166703	.	-	0	Parent=Os09t0538000-01
Chr09	irgsp1_rep	CDS	21166542	21166617	.	-	1	Parent=Os09t0538000-01
Chr09	irgsp1_rep	CDS	21166009	21166198	.	-	0	Parent=Os09t0538000-01
Chr09	irgsp1_rep	CDS	21165544	21165857	.	-	2	Parent=Os09t0538000-01
Chr09	irgsp1_rep	three_prime_UTR	21165241	21165543	.	-	.	Parent=Os09t0538000-01
Chr09	irgsp1_rep	mRNA	21165219	21167647	.	-	.	ID=Os09t0538000-04;Name=Os09t0538000-04;Locus_id=Os09g0538000;CGSNL Gene Symbol=RNS5;CGSNL Gene Name=RIBONUCLEASE 5;Oryzabase Gene Symbol Synonym(s)=OsRNS5;Oryzabase Gene Name Synonym(s)=RNase 5;Note=RNase S-like protein.;Transcript_evidence=AK059757 (DDBJ%2C Best hit),AK061442 (DDBJ%2C Best hit),AK104237 (DDBJ%2C Best hit),AK104261 (DDBJ%2C Best hit),AK104263 (DDBJ%2C Best hit),AK104390 (DDBJ%2C Best hit),AK104456 (DDBJ%2C Best hit),AK104648 (DDBJ%2C Best hit),AK109411 (DDBJ%2C Best hit),AK119171 (DDBJ%2C Best hit);ORF_evidence=A6MZT8 (UniProt);NIAS_FLcDNA=006-203-D06,006-307-C07,006-307-H08,006-310-B09,006-310-D05,006-201-H04,006-301-A10,006-310-H05,006-303-E09,001-036-H08;Oryzabase=13017;Expression=AK059757;TENOR=Os09t0538000-04;KEGG=Os09t0538000-04
Chr09	irgsp1_rep	five_prime_UTR	21167580	21167647	.	-	.	Parent=Os09t0538000-04
Chr09	irgsp1_rep	CDS	21167466	21167579	.	-	0	Parent=Os09t0538000-04
Chr09	irgsp1_rep	CDS	21166542	21166703	.	-	0	Parent=Os09t0538000-04
Chr09	irgsp1_rep	CDS	21166009	21166198	.	-	0	Parent=Os09t0538000-04
Chr09	irgsp1_rep	CDS	21165544	21165857	.	-	2	Parent=Os09t0538000-04
Chr09	irgsp1_rep	three_prime_UTR	21165219	21165543	.	-	.	Parent=Os09t0538000-04
Chr09	irgsp1_rep	mRNA	21165227	21165547	.	-	.	ID=Os09t0538000-05;Name=Os09t0538000-05;Locus_id=Os09g0538000;CGSNL Gene Symbol=RNS5;CGSNL Gene Name=RIBONUCLEASE 5;Oryzabase Gene Symbol Synonym(s)=OsRNS5;Oryzabase Gene Name Synonym(s)=RNase 5;Note=Non-protein coding transcript.;Transcript_evidence=AK058621 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-018-B08;Oryzabase=13017;TENOR=Os09t0538000-05
Chr09	irgsp1_rep	exon	21165227	21165547	.	-	.	Parent=Os09t0538000-05
Chr09	irgsp1_rep	mRNA	21171690	21173884	.	+	.	ID=Os09t0538200-01;Name=Os09t0538200-01;Locus_id=Os09g0538200;Oryzabase Gene Symbol Synonym(s)=OsPAD1;Oryzabase Gene Name Synonym(s)=20S proteasome alpha4 subunit;Note=Proteasome subunit alpha type 7 (EC 3.4.25.1) (20S proteasome alpha subunit D) (20S proteasome subunit alpha-4).;Transcript_evidence=AK242072 (DDBJ%2C Best hit);ORF_evidence=Q0J006 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603),Cellular Component: proteasome core complex (GO:0005839),Cellular Component: proteasome core complex%2C alpha-subunit complex (GO:0019773),Molecular Function: endopeptidase activity (GO:0004175),Molecular Function: threonine-type endopeptidase activity (GO:0004298);InterPro=Proteasome%2C alpha-subunit%2C conserved site (IPR000426),Proteasome%2C subunit alpha/beta (IPR001353),Proteasome A-type subunit (IPR023332);NIAS_FLcDNA=J075134I16;Oryzabase=14497;TENOR=Os09t0538200-01;KEGG=Os09t0538200-01 (EC:3.4.25.1)
Chr09	irgsp1_rep	five_prime_UTR	21171690	21171738	.	+	.	Parent=Os09t0538200-01
Chr09	irgsp1_rep	CDS	21171739	21171911	.	+	0	Parent=Os09t0538200-01
Chr09	irgsp1_rep	CDS	21171992	21172406	.	+	1	Parent=Os09t0538200-01
Chr09	irgsp1_rep	CDS	21173573	21173734	.	+	0	Parent=Os09t0538200-01
Chr09	irgsp1_rep	three_prime_UTR	21173735	21173884	.	+	.	Parent=Os09t0538200-01
Chr09	irgsp1_rep	mRNA	21189530	21190738	.	-	.	ID=Os09t0538400-01;Name=Os09t0538400-01;Locus_id=Os09g0538400;RAP-DB Gene Symbol Synonym(s)=OsMYB108;RAP-DB Gene Name Synonym(s)=Myb transcription factor 108;CGSNL Gene Symbol=DLN231;CGSNL Gene Name=DLN REPRESSOR 231;Oryzabase Gene Symbol Synonym(s)=R2R3-MYB%2C OsDLN231%2C OsMYB108%2C MYB108%2C OsMYB31%2C MYB31;Oryzabase Gene Name Synonym(s)=MYB transcription factor%2C DLN repressor 231%2C DLN motif protein 231;Note=MYB transcription factor%2C Transcriptional repressor%2C Regulation of lignin biosynthesis%2C Secondary cell wall formation;Transcript_evidence=AK111966,AK104408,AK104457;ORF_evidence=Q69JE8;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeobox-like domain superfamily (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930);NIAS_FLcDNA=006-202-H01,006-203-E04,006-301-B02;Manual Curation=February 21%2C 2019;Literature_PMID=30773774;Oryzabase=16192;TENOR=Os09t0538400-01
Chr09	irgsp1_rep	five_prime_UTR	21190644	21190738	.	-	.	Parent=Os09t0538400-01
Chr09	irgsp1_rep	CDS	21190381	21190643	.	-	0	Parent=Os09t0538400-01
Chr09	irgsp1_rep	CDS	21189731	21190223	.	-	1	Parent=Os09t0538400-01
Chr09	irgsp1_rep	three_prime_UTR	21189530	21189730	.	-	.	Parent=Os09t0538400-01
Chr09	irgsp1_rep	mRNA	21196428	21197328	.	-	.	ID=Os09t0538450-01;Name=Os09t0538450-01;Locus_id=Os09g0538450;Note=Conserved hypothetical protein.;Transcript_evidence=AK242467 (DDBJ%2C Best hit);ORF_evidence=NP_001175959.1 (RefSeq);NIAS_FLcDNA=J080302B10;TENOR=Os09t0538450-01;KEGG=Os09t0538450-01
Chr09	irgsp1_rep	five_prime_UTR	21197150	21197328	.	-	.	Parent=Os09t0538450-01
Chr09	irgsp1_rep	CDS	21196896	21197149	.	-	0	Parent=Os09t0538450-01
Chr09	irgsp1_rep	CDS	21196646	21196721	.	-	1	Parent=Os09t0538450-01
Chr09	irgsp1_rep	three_prime_UTR	21196428	21196645	.	-	.	Parent=Os09t0538450-01
Chr09	irgsp1_rep	mRNA	21197503	21199688	.	+	.	ID=Os09t0538500-01;Name=Os09t0538500-01;Locus_id=Os09g0538500;Note=Similar to Male sterility MS5.;Transcript_evidence=AK121538 (DDBJ%2C Best hit),AK105425 (DDBJ%2C Best hit),AK121685 (DDBJ%2C Best hit);ORF_evidence=XP_002865684.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide TPR-1 (IPR001440),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J033031F12,001-124-C06,J033070K09;TENOR=Os09t0538500-01
Chr09	irgsp1_rep	five_prime_UTR	21197503	21197595	.	+	.	Parent=Os09t0538500-01
Chr09	irgsp1_rep	CDS	21197596	21197817	.	+	0	Parent=Os09t0538500-01
Chr09	irgsp1_rep	CDS	21197895	21198107	.	+	0	Parent=Os09t0538500-01
Chr09	irgsp1_rep	CDS	21198191	21198346	.	+	0	Parent=Os09t0538500-01
Chr09	irgsp1_rep	CDS	21198427	21199383	.	+	0	Parent=Os09t0538500-01
Chr09	irgsp1_rep	three_prime_UTR	21199384	21199688	.	+	.	Parent=Os09t0538500-01
Chr09	irgsp1_rep	mRNA	21199731	21202763	.	-	.	ID=Os09t0538600-01;Name=Os09t0538600-01;Locus_id=Os09g0538600;Note=Similar to Peroxisome type ascorbate peroxidase.;Transcript_evidence=AK108458 (DDBJ%2C Best hit);ORF_evidence=B4FA06 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Plant ascorbate peroxidase (IPR002207),Haem peroxidase (IPR010255);NIAS_FLcDNA=002-143-D05;Expression=AK108458;TENOR=Os09t0538600-01;KEGG=Os09t0538600-01 (EC:1.11.1.-)
Chr09	irgsp1_rep	five_prime_UTR	21202734	21202763	.	-	.	Parent=Os09t0538600-01
Chr09	irgsp1_rep	CDS	21202650	21202733	.	-	0	Parent=Os09t0538600-01
Chr09	irgsp1_rep	CDS	21201742	21201807	.	-	0	Parent=Os09t0538600-01
Chr09	irgsp1_rep	CDS	21201612	21201660	.	-	0	Parent=Os09t0538600-01
Chr09	irgsp1_rep	CDS	21200409	21200425	.	-	2	Parent=Os09t0538600-01
Chr09	irgsp1_rep	three_prime_UTR	21200346	21200408	.	-	.	Parent=Os09t0538600-01
Chr09	irgsp1_rep	three_prime_UTR	21200155	21200257	.	-	.	Parent=Os09t0538600-01
Chr09	irgsp1_rep	three_prime_UTR	21199731	21200073	.	-	.	Parent=Os09t0538600-01
Chr09	irgsp1_rep	mRNA	21208855	21213168	.	+	.	ID=Os09t0538700-01;Name=Os09t0538700-01;Locus_id=Os09g0538700;Note=Protein of unknown function DUF632 domain containing protein.;Transcript_evidence=AK287617 (DDBJ%2C Best hit);ORF_evidence=XP_002876080.1 (RefSeq);InterPro=Domain of unknown function DUF632 (IPR006867),Domain of unknown function DUF630 (IPR006868);NIAS_FLcDNA=J065065D11;TENOR=Os09t0538700-01;KEGG=Os09t0538700-01
Chr09	irgsp1_rep	five_prime_UTR	21208855	21208952	.	+	.	Parent=Os09t0538700-01
Chr09	irgsp1_rep	CDS	21208953	21209700	.	+	0	Parent=Os09t0538700-01
Chr09	irgsp1_rep	CDS	21209810	21210018	.	+	2	Parent=Os09t0538700-01
Chr09	irgsp1_rep	CDS	21210726	21210949	.	+	0	Parent=Os09t0538700-01
Chr09	irgsp1_rep	CDS	21212107	21212887	.	+	1	Parent=Os09t0538700-01
Chr09	irgsp1_rep	three_prime_UTR	21212888	21213168	.	+	.	Parent=Os09t0538700-01
Chr09	irgsp1_rep	mRNA	21213340	21222936	.	-	.	ID=Os09t0538800-01;Name=Os09t0538800-01;Locus_id=Os09g0538800;CGSNL Gene Symbol=NTMC2T1.2;CGSNL Gene Name=N-TERMINAL-TM-C2 DOMAIN PROTEIN 1.2;Oryzabase Gene Symbol Synonym(s)=OsNTMC2T1.2;Oryzabase Gene Name Synonym(s)=N-terminal-TM-C2 domain protein 1.2%2C N-terminal trans- membrane and C2 domain protein 1.2%2C NTMC2 type 1.2 protein%2C NTMC2 family gene 1.2;Note=Similar to Synaptotagmin C.;Transcript_evidence=AK068006 (DDBJ%2C Best hit);ORF_evidence=NP_001152047.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),C2 membrane targeting protein (IPR018029),C2 region (IPR020477);NIAS_FLcDNA=J013129N09;Oryzabase=22120;Expression=AK068006;TENOR=Os09t0538800-01;KEGG=Os09t0538800-01
Chr09	irgsp1_rep	five_prime_UTR	21222594	21222936	.	-	.	Parent=Os09t0538800-01
Chr09	irgsp1_rep	five_prime_UTR	21217343	21217392	.	-	.	Parent=Os09t0538800-01
Chr09	irgsp1_rep	CDS	21217232	21217342	.	-	0	Parent=Os09t0538800-01
Chr09	irgsp1_rep	CDS	21216640	21216738	.	-	0	Parent=Os09t0538800-01
Chr09	irgsp1_rep	CDS	21216474	21216524	.	-	0	Parent=Os09t0538800-01
Chr09	irgsp1_rep	CDS	21216254	21216377	.	-	0	Parent=Os09t0538800-01
Chr09	irgsp1_rep	CDS	21215722	21215840	.	-	2	Parent=Os09t0538800-01
Chr09	irgsp1_rep	CDS	21215511	21215612	.	-	0	Parent=Os09t0538800-01
Chr09	irgsp1_rep	CDS	21215364	21215438	.	-	0	Parent=Os09t0538800-01
Chr09	irgsp1_rep	CDS	21214882	21214958	.	-	0	Parent=Os09t0538800-01
Chr09	irgsp1_rep	CDS	21214554	21214800	.	-	1	Parent=Os09t0538800-01
Chr09	irgsp1_rep	CDS	21214111	21214464	.	-	0	Parent=Os09t0538800-01
Chr09	irgsp1_rep	CDS	21213863	21213994	.	-	0	Parent=Os09t0538800-01
Chr09	irgsp1_rep	CDS	21213629	21213757	.	-	0	Parent=Os09t0538800-01
Chr09	irgsp1_rep	three_prime_UTR	21213340	21213628	.	-	.	Parent=Os09t0538800-01
Chr09	irgsp1_rep	mRNA	21213366	21218993	.	-	.	ID=Os09t0538800-02;Name=Os09t0538800-02;Locus_id=Os09g0538800;CGSNL Gene Symbol=NTMC2T1.2;CGSNL Gene Name=N-TERMINAL-TM-C2 DOMAIN PROTEIN 1.2;Oryzabase Gene Symbol Synonym(s)=OsNTMC2T1.2;Oryzabase Gene Name Synonym(s)=N-terminal-TM-C2 domain protein 1.2%2C N-terminal trans- membrane and C2 domain protein 1.2%2C NTMC2 type 1.2 protein%2C NTMC2 family gene 1.2;Note=Similar to Synaptotagmin C.;Transcript_evidence=AK065681 (DDBJ%2C Best hit);ORF_evidence=NP_001152047.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),C2 membrane targeting protein (IPR018029),C2 region (IPR020477);NIAS_FLcDNA=J013038J10;Oryzabase=22120;Expression=AK065681;TENOR=Os09t0538800-02;KEGG=Os09t0538800-02
Chr09	irgsp1_rep	five_prime_UTR	21218783	21218993	.	-	.	Parent=Os09t0538800-02
Chr09	irgsp1_rep	five_prime_UTR	21217343	21217392	.	-	.	Parent=Os09t0538800-02
Chr09	irgsp1_rep	CDS	21217232	21217342	.	-	0	Parent=Os09t0538800-02
Chr09	irgsp1_rep	CDS	21216640	21216738	.	-	0	Parent=Os09t0538800-02
Chr09	irgsp1_rep	CDS	21216474	21216524	.	-	0	Parent=Os09t0538800-02
Chr09	irgsp1_rep	CDS	21216254	21216377	.	-	0	Parent=Os09t0538800-02
Chr09	irgsp1_rep	CDS	21215722	21215840	.	-	2	Parent=Os09t0538800-02
Chr09	irgsp1_rep	CDS	21215511	21215612	.	-	0	Parent=Os09t0538800-02
Chr09	irgsp1_rep	CDS	21215364	21215438	.	-	0	Parent=Os09t0538800-02
Chr09	irgsp1_rep	CDS	21214882	21214958	.	-	0	Parent=Os09t0538800-02
Chr09	irgsp1_rep	CDS	21214554	21214800	.	-	1	Parent=Os09t0538800-02
Chr09	irgsp1_rep	CDS	21214111	21214464	.	-	0	Parent=Os09t0538800-02
Chr09	irgsp1_rep	CDS	21213863	21213994	.	-	0	Parent=Os09t0538800-02
Chr09	irgsp1_rep	CDS	21213629	21213757	.	-	0	Parent=Os09t0538800-02
Chr09	irgsp1_rep	three_prime_UTR	21213366	21213628	.	-	.	Parent=Os09t0538800-02
Chr09	irgsp1_rep	mRNA	21214248	21217617	.	-	.	ID=Os09t0538800-03;Name=Os09t0538800-03;Locus_id=Os09g0538800;CGSNL Gene Symbol=NTMC2T1.2;CGSNL Gene Name=N-TERMINAL-TM-C2 DOMAIN PROTEIN 1.2;Oryzabase Gene Symbol Synonym(s)=OsNTMC2T1.2;Oryzabase Gene Name Synonym(s)=N-terminal-TM-C2 domain protein 1.2%2C N-terminal trans- membrane and C2 domain protein 1.2%2C NTMC2 type 1.2 protein%2C NTMC2 family gene 1.2;Note=Similar to calcium lipid binding protein-like.;Transcript_evidence=AK068206 (DDBJ%2C Best hit);ORF_evidence=NP_001152047.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),C2 membrane targeting protein (IPR018029),C2 region (IPR020477);NIAS_FLcDNA=J013148O13;Oryzabase=22120;TENOR=Os09t0538800-03
Chr09	irgsp1_rep	five_prime_UTR	21217528	21217617	.	-	.	Parent=Os09t0538800-03
Chr09	irgsp1_rep	five_prime_UTR	21217343	21217392	.	-	.	Parent=Os09t0538800-03
Chr09	irgsp1_rep	CDS	21217232	21217342	.	-	0	Parent=Os09t0538800-03
Chr09	irgsp1_rep	CDS	21216640	21216738	.	-	0	Parent=Os09t0538800-03
Chr09	irgsp1_rep	CDS	21216474	21216524	.	-	0	Parent=Os09t0538800-03
Chr09	irgsp1_rep	CDS	21216254	21216377	.	-	0	Parent=Os09t0538800-03
Chr09	irgsp1_rep	CDS	21215722	21215840	.	-	2	Parent=Os09t0538800-03
Chr09	irgsp1_rep	CDS	21215511	21215612	.	-	0	Parent=Os09t0538800-03
Chr09	irgsp1_rep	CDS	21215364	21215438	.	-	0	Parent=Os09t0538800-03
Chr09	irgsp1_rep	CDS	21214882	21214958	.	-	0	Parent=Os09t0538800-03
Chr09	irgsp1_rep	CDS	21214554	21214800	.	-	1	Parent=Os09t0538800-03
Chr09	irgsp1_rep	CDS	21214248	21214464	.	-	0	Parent=Os09t0538800-03
Chr09	irgsp1_rep	mRNA	21213431	21217362	.	+	.	ID=Os09t0538901-00;Name=Os09t0538901-00;Locus_id=Os09g0538901;Note=Hypothetical protein.;Transcript_evidence=tplb0031a09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0538901-00
Chr09	irgsp1_rep	five_prime_UTR	21213431	21213742	.	+	.	Parent=Os09t0538901-00
Chr09	irgsp1_rep	five_prime_UTR	21213848	21213979	.	+	.	Parent=Os09t0538901-00
Chr09	irgsp1_rep	five_prime_UTR	21214101	21214164	.	+	.	Parent=Os09t0538901-00
Chr09	irgsp1_rep	CDS	21214165	21214462	.	+	0	Parent=Os09t0538901-00
Chr09	irgsp1_rep	CDS	21214552	21214691	.	+	2	Parent=Os09t0538901-00
Chr09	irgsp1_rep	three_prime_UTR	21214692	21214800	.	+	.	Parent=Os09t0538901-00
Chr09	irgsp1_rep	three_prime_UTR	21214882	21214953	.	+	.	Parent=Os09t0538901-00
Chr09	irgsp1_rep	three_prime_UTR	21215358	21215432	.	+	.	Parent=Os09t0538901-00
Chr09	irgsp1_rep	three_prime_UTR	21215502	21215622	.	+	.	Parent=Os09t0538901-00
Chr09	irgsp1_rep	three_prime_UTR	21215730	21215839	.	+	.	Parent=Os09t0538901-00
Chr09	irgsp1_rep	three_prime_UTR	21216253	21216400	.	+	.	Parent=Os09t0538901-00
Chr09	irgsp1_rep	three_prime_UTR	21216618	21216735	.	+	.	Parent=Os09t0538901-00
Chr09	irgsp1_rep	three_prime_UTR	21217224	21217362	.	+	.	Parent=Os09t0538901-00
Chr09	irgsp1_rep	mRNA	21224394	21225635	.	+	.	ID=Os09t0539000-00;Name=Os09t0539000-00;Locus_id=Os09g0539000;Note=Hypothetical conserved gene.;Transcript_evidence=CU406847 (DDBJ%2C Best hit);ORF_evidence=NP_001175962.1 (RefSeq);TENOR=Os09t0539000-00;KEGG=Os09t0539000-00
Chr09	irgsp1_rep	five_prime_UTR	21224394	21224915	.	+	.	Parent=Os09t0539000-00
Chr09	irgsp1_rep	CDS	21224916	21225458	.	+	0	Parent=Os09t0539000-00
Chr09	irgsp1_rep	three_prime_UTR	21225459	21225635	.	+	.	Parent=Os09t0539000-00
Chr09	irgsp1_rep	mRNA	21225961	21229331	.	-	.	ID=Os09t0539100-01;Name=Os09t0539100-01;Locus_id=Os09g0539100;Oryzabase Gene Symbol Synonym(s)=DHQS%2C OsDHQS;Oryzabase Gene Name Synonym(s)=3-dehydroquinate synthase;Note=Similar to 3-dehydroquinate synthase-like protein.;Transcript_evidence=AK071977 (DDBJ%2C Best hit),AK098959 (DDBJ%2C Best hit);ORF_evidence=NP_001149662.1 (RefSeq);GO=Biological Process: aromatic amino acid family biosynthetic process (GO:0009073),Cellular Component: cytoplasm (GO:0005737),Molecular Function: 3-dehydroquinate synthase activity (GO:0003856);InterPro=3-dehydroquinate synthase AroB (IPR016037);NIAS_FLcDNA=J013087E18,J013067A20;Oryzabase=16769;TENOR=Os09t0539100-01
Chr09	irgsp1_rep	five_prime_UTR	21229283	21229331	.	-	.	Parent=Os09t0539100-01
Chr09	irgsp1_rep	CDS	21228960	21229282	.	-	0	Parent=Os09t0539100-01
Chr09	irgsp1_rep	CDS	21228741	21228891	.	-	1	Parent=Os09t0539100-01
Chr09	irgsp1_rep	CDS	21228481	21228648	.	-	0	Parent=Os09t0539100-01
Chr09	irgsp1_rep	CDS	21228172	21228398	.	-	0	Parent=Os09t0539100-01
Chr09	irgsp1_rep	CDS	21227386	21227509	.	-	1	Parent=Os09t0539100-01
Chr09	irgsp1_rep	CDS	21226784	21226846	.	-	0	Parent=Os09t0539100-01
Chr09	irgsp1_rep	CDS	21226540	21226683	.	-	0	Parent=Os09t0539100-01
Chr09	irgsp1_rep	CDS	21226231	21226362	.	-	0	Parent=Os09t0539100-01
Chr09	irgsp1_rep	three_prime_UTR	21225961	21226230	.	-	.	Parent=Os09t0539100-01
Chr09	irgsp1_rep	mRNA	21230192	21235993	.	+	.	ID=Os09t0539200-01;Name=Os09t0539200-01;Locus_id=Os09g0539200;CGSNL Gene Symbol=BGAL11;CGSNL Gene Name=BETA-GALACTOSIDASE 11;Oryzabase Gene Symbol Synonym(s)=OsBgal11%2C OsBGal11;Oryzabase Gene Name Synonym(s)=Beta-galactosidase 12%2C Lactase 12;Note=Similar to Relative to SR12 protein (Fragment).;Transcript_evidence=AK119414 (DDBJ%2C Best hit);ORF_evidence=B9G4T4 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 35 (IPR001944),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 35%2C conserved site (IPR019801);NIAS_FLcDNA=001-132-F12;Oryzabase=8285;Expression=AK119414;TENOR=Os09t0539200-01;KEGG=Os09t0539200-01
Chr09	irgsp1_rep	five_prime_UTR	21230192	21230302	.	+	.	Parent=Os09t0539200-01
Chr09	irgsp1_rep	CDS	21230303	21230593	.	+	0	Parent=Os09t0539200-01
Chr09	irgsp1_rep	CDS	21231150	21231262	.	+	0	Parent=Os09t0539200-01
Chr09	irgsp1_rep	CDS	21231363	21231429	.	+	1	Parent=Os09t0539200-01
Chr09	irgsp1_rep	CDS	21231510	21231602	.	+	0	Parent=Os09t0539200-01
Chr09	irgsp1_rep	CDS	21231699	21231842	.	+	0	Parent=Os09t0539200-01
Chr09	irgsp1_rep	CDS	21232006	21232097	.	+	0	Parent=Os09t0539200-01
Chr09	irgsp1_rep	CDS	21232379	21232484	.	+	1	Parent=Os09t0539200-01
Chr09	irgsp1_rep	CDS	21232580	21232664	.	+	0	Parent=Os09t0539200-01
Chr09	irgsp1_rep	CDS	21232766	21232884	.	+	2	Parent=Os09t0539200-01
Chr09	irgsp1_rep	CDS	21232972	21233202	.	+	0	Parent=Os09t0539200-01
Chr09	irgsp1_rep	three_prime_UTR	21233203	21233238	.	+	.	Parent=Os09t0539200-01
Chr09	irgsp1_rep	three_prime_UTR	21233322	21233424	.	+	.	Parent=Os09t0539200-01
Chr09	irgsp1_rep	three_prime_UTR	21233546	21233655	.	+	.	Parent=Os09t0539200-01
Chr09	irgsp1_rep	three_prime_UTR	21233744	21233853	.	+	.	Parent=Os09t0539200-01
Chr09	irgsp1_rep	three_prime_UTR	21234101	21234208	.	+	.	Parent=Os09t0539200-01
Chr09	irgsp1_rep	three_prime_UTR	21234400	21234501	.	+	.	Parent=Os09t0539200-01
Chr09	irgsp1_rep	three_prime_UTR	21234612	21234757	.	+	.	Parent=Os09t0539200-01
Chr09	irgsp1_rep	three_prime_UTR	21234849	21235194	.	+	.	Parent=Os09t0539200-01
Chr09	irgsp1_rep	three_prime_UTR	21235508	21235993	.	+	.	Parent=Os09t0539200-01
Chr09	irgsp1_rep	mRNA	21239649	21242340	.	+	.	ID=Os09t0539400-00;Name=Os09t0539400-00;Locus_id=Os09g0539400;CGSNL Gene Symbol=MCM10;CGSNL Gene Name=MINI-CHROMOSOME MAINTENANCE PROTEIN 10;Oryzabase Gene Symbol Synonym(s)=OsMCM10;Oryzabase Gene Name Synonym(s)=mini-Chromosome maintenance protein 10;Note=Similar to MCM10 miniChromosome maintenance deficient 10.;Transcript_evidence=EU963299 (DDBJ);ORF_evidence=B6TE84 (UniProt);GO=Biological Process: DNA replication (GO:0006260),Cellular Component: nucleus (GO:0005634);InterPro=Zinc finger%2C Mcm10/DnaG-type (IPR015408);Oryzabase=7360;TENOR=Os09t0539400-00;KEGG=Os09t0539400-00
Chr09	irgsp1_rep	five_prime_UTR	21239649	21239749	.	+	.	Parent=Os09t0539400-00
Chr09	irgsp1_rep	CDS	21239750	21240123	.	+	0	Parent=Os09t0539400-00
Chr09	irgsp1_rep	CDS	21240213	21240450	.	+	1	Parent=Os09t0539400-00
Chr09	irgsp1_rep	CDS	21240533	21240657	.	+	0	Parent=Os09t0539400-00
Chr09	irgsp1_rep	CDS	21241075	21241108	.	+	1	Parent=Os09t0539400-00
Chr09	irgsp1_rep	CDS	21241197	21241243	.	+	0	Parent=Os09t0539400-00
Chr09	irgsp1_rep	CDS	21241341	21241472	.	+	1	Parent=Os09t0539400-00
Chr09	irgsp1_rep	CDS	21241813	21241889	.	+	1	Parent=Os09t0539400-00
Chr09	irgsp1_rep	CDS	21242006	21242078	.	+	2	Parent=Os09t0539400-00
Chr09	irgsp1_rep	CDS	21242183	21242339	.	+	1	Parent=Os09t0539400-00
Chr09	irgsp1_rep	three_prime_UTR	21242340	21242340	.	+	.	Parent=Os09t0539400-00
Chr09	irgsp1_rep	mRNA	21243207	21245827	.	-	.	ID=Os09t0539500-01;Name=Os09t0539500-01;Locus_id=Os09g0539500;Oryzabase Gene Symbol Synonym(s)=OSK20;Oryzabase Gene Name Synonym(s)=S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 20%2C Oryza sativa SKP1-like gene 20;Note=Similar to SKP1-like protein 1A.;Transcript_evidence=AK241794 (DDBJ%2C Best hit);ORF_evidence=B6T1N1 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);InterPro=SKP1 component (IPR001232),BTB/POZ fold (IPR011333),SKP1 component%2C dimerisation (IPR016072),SKP1 component%2C POZ (IPR016073),E3 ubiquitin ligase%2C SCF complex%2C Skp subunit (IPR016897);NIAS_FLcDNA=J065208D18;Oryzabase=18281;TENOR=Os09t0539500-01;KEGG=Os09t0539500-01
Chr09	irgsp1_rep	five_prime_UTR	21245756	21245827	.	-	.	Parent=Os09t0539500-01
Chr09	irgsp1_rep	CDS	21245402	21245755	.	-	0	Parent=Os09t0539500-01
Chr09	irgsp1_rep	CDS	21243461	21243634	.	-	0	Parent=Os09t0539500-01
Chr09	irgsp1_rep	three_prime_UTR	21243207	21243460	.	-	.	Parent=Os09t0539500-01
Chr09	irgsp1_rep	mRNA	21251878	21252735	.	-	.	ID=Os09t0539700-01;Name=Os09t0539700-01;Locus_id=Os09g0539700;Note=Conserved hypothetical protein.;Transcript_evidence=AK242905 (DDBJ%2C Best hit);ORF_evidence=NP_001063806.1 (RefSeq);NIAS_FLcDNA=J090082D24;TENOR=Os09t0539700-01;KEGG=Os09t0539700-01
Chr09	irgsp1_rep	five_prime_UTR	21252675	21252735	.	-	.	Parent=Os09t0539700-01
Chr09	irgsp1_rep	CDS	21252042	21252674	.	-	0	Parent=Os09t0539700-01
Chr09	irgsp1_rep	three_prime_UTR	21251878	21252041	.	-	.	Parent=Os09t0539700-01
Chr09	irgsp1_rep	mRNA	21254336	21255108	.	-	.	ID=Os09t0539800-01;Name=Os09t0539800-01;Locus_id=Os09g0539800;Note=Similar to Acyl carrier protein III%2C chloroplast precursor (ACP III).;Transcript_evidence=AK058903 (DDBJ%2C Best hit);ORF_evidence=A3C125 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Molecular Function: acyl carrier activity (GO:0000036),Molecular Function: phosphopantetheine binding (GO:0031177),Molecular Function: cofactor binding (GO:0048037);InterPro=Acyl carrier protein (ACP) (IPR003231),Phosphopantetheine attachment site (IPR006162),Phosphopantetheine-binding (IPR006163),Acyl carrier protein-like (IPR009081);NIAS_FLcDNA=001-008-B10;Expression=AK058903;TENOR=Os09t0539800-01;KEGG=Os09t0539800-01
Chr09	irgsp1_rep	five_prime_UTR	21255107	21255108	.	-	.	Parent=Os09t0539800-01
Chr09	irgsp1_rep	CDS	21255014	21255106	.	-	0	Parent=Os09t0539800-01
Chr09	irgsp1_rep	CDS	21254529	21254654	.	-	0	Parent=Os09t0539800-01
Chr09	irgsp1_rep	three_prime_UTR	21254336	21254528	.	-	.	Parent=Os09t0539800-01
Chr09	irgsp1_rep	mRNA	21260360	21261082	.	-	.	ID=Os09t0539901-00;Name=Os09t0539901-00;Locus_id=Os09g0539901;Note=Hypothetical gene.;Transcript_evidence=CU861776 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os09t0539901-00;KEGG=Os09t0539901-00
Chr09	irgsp1_rep	five_prime_UTR	21261081	21261082	.	-	.	Parent=Os09t0539901-00
Chr09	irgsp1_rep	CDS	21260829	21261080	.	-	0	Parent=Os09t0539901-00
Chr09	irgsp1_rep	three_prime_UTR	21260778	21260828	.	-	.	Parent=Os09t0539901-00
Chr09	irgsp1_rep	three_prime_UTR	21260360	21260639	.	-	.	Parent=Os09t0539901-00
Chr09	irgsp1_rep	mRNA	21261357	21261902	.	-	.	ID=Os09t0540000-01;Name=Os09t0540000-01;Locus_id=Os09g0540000;Note=Hypothetical gene.;Transcript_evidence=AK064703 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-116-H09;Expression=AK064703;TENOR=Os09t0540000-01;KEGG=Os09t0540000-01
Chr09	irgsp1_rep	five_prime_UTR	21261902	21261902	.	-	.	Parent=Os09t0540000-01
Chr09	irgsp1_rep	CDS	21261521	21261901	.	-	0	Parent=Os09t0540000-01
Chr09	irgsp1_rep	three_prime_UTR	21261357	21261520	.	-	.	Parent=Os09t0540000-01
Chr09	irgsp1_rep	mRNA	21263178	21263586	.	-	.	ID=Os09t0540150-01;Name=Os09t0540150-01;Locus_id=Os09g0540150;Note=Conserved hypothetical protein.;Transcript_evidence=AK242511 (DDBJ%2C Best hit);ORF_evidence=NP_001175963.1 (RefSeq);NIAS_FLcDNA=J080311J05;TENOR=Os09t0540150-01
Chr09	irgsp1_rep	five_prime_UTR	21263449	21263586	.	-	.	Parent=Os09t0540150-01
Chr09	irgsp1_rep	CDS	21263178	21263448	.	-	0	Parent=Os09t0540150-01
Chr09	irgsp1_rep	mRNA	21266324	21267787	.	-	.	ID=Os09t0540300-00;Name=Os09t0540300-00;Locus_id=Os09g0540300;Note=Protein of unknown function DUF247%2C plant domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q651E4 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);TENOR=Os09t0540300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	21267032	21267787	.	-	0	Parent=Os09t0540300-00
Chr09	irgsp1_rep	CDS	21266324	21266713	.	-	0	Parent=Os09t0540300-00
Chr09	irgsp1_rep	mRNA	21266361	21267678	.	+	.	ID=Os09t0540325-00;Name=Os09t0540325-00;Locus_id=Os09g0540325;Note=Hypothetical protein.;Transcript_evidence=EU956917 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0540325-00
Chr09	irgsp1_rep	five_prime_UTR	21266361	21267013	.	+	.	Parent=Os09t0540325-00
Chr09	irgsp1_rep	CDS	21267014	21267678	.	+	0	Parent=Os09t0540325-00
Chr09	irgsp1_rep	mRNA	21268525	21273225	.	+	.	ID=Os09t0540350-01;Name=Os09t0540350-01;Locus_id=Os09g0540350;Note=Non-protein coding transcript.;Transcript_evidence=AK288529 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090044M17;TENOR=Os09t0540350-01
Chr09	irgsp1_rep	exon	21268525	21273225	.	+	.	Parent=Os09t0540350-01
Chr09	irgsp1_rep	mRNA	21270652	21272588	.	-	.	ID=Os09t0540400-01;Name=Os09t0540400-01;Locus_id=Os09g0540400;CGSNL Gene Symbol=GELP100;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 100;Oryzabase Gene Symbol Synonym(s)=OsGELP100%2C OsGELP100a%2C OsGELP100b;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 100;Note=Similar to Anther-specific proline-rich protein APG.;Transcript_evidence=AK111927 (DDBJ%2C Best hit);ORF_evidence=B7F4G1 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: lipase activity (GO:0016298),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087),Lipase%2C GDSL%2C active site (IPR008265);NIAS_FLcDNA=001-015-C10;Oryzabase=11050;Expression=AK111927;TENOR=Os09t0540400-01;KEGG=Os09t0540400-01
Chr09	irgsp1_rep	five_prime_UTR	21272541	21272588	.	-	.	Parent=Os09t0540400-01
Chr09	irgsp1_rep	CDS	21272267	21272540	.	-	0	Parent=Os09t0540400-01
Chr09	irgsp1_rep	CDS	21272052	21272182	.	-	2	Parent=Os09t0540400-01
Chr09	irgsp1_rep	CDS	21271540	21271773	.	-	0	Parent=Os09t0540400-01
Chr09	irgsp1_rep	CDS	21271092	21271427	.	-	0	Parent=Os09t0540400-01
Chr09	irgsp1_rep	three_prime_UTR	21270652	21271091	.	-	.	Parent=Os09t0540400-01
Chr09	irgsp1_rep	mRNA	21270668	21272564	.	-	.	ID=Os09t0540400-02;Name=Os09t0540400-02;Locus_id=Os09g0540400;CGSNL Gene Symbol=GELP100;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 100;Oryzabase Gene Symbol Synonym(s)=OsGELP100%2C OsGELP100a%2C OsGELP100b;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 100;Note=Similar to Family II lipase EXL3.;Transcript_evidence=AK112006 (DDBJ%2C Best hit);ORF_evidence=B6T774 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: lipase activity (GO:0016298),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087),Lipase%2C GDSL%2C active site (IPR008265),Esterase%2C SGNH hydrolase-type (IPR013830),Esterase%2C SGNH hydrolase-type%2C subgroup (IPR013831);NIAS_FLcDNA=006-205-B09;Oryzabase=11050;Expression=AK112006;TENOR=Os09t0540400-02;KEGG=Os09t0540400-02
Chr09	irgsp1_rep	five_prime_UTR	21272541	21272564	.	-	.	Parent=Os09t0540400-02
Chr09	irgsp1_rep	CDS	21272267	21272540	.	-	0	Parent=Os09t0540400-02
Chr09	irgsp1_rep	CDS	21272052	21272182	.	-	2	Parent=Os09t0540400-02
Chr09	irgsp1_rep	CDS	21271540	21271773	.	-	0	Parent=Os09t0540400-02
Chr09	irgsp1_rep	CDS	21271160	21271427	.	-	0	Parent=Os09t0540400-02
Chr09	irgsp1_rep	CDS	21270843	21271036	.	-	2	Parent=Os09t0540400-02
Chr09	irgsp1_rep	three_prime_UTR	21270668	21270842	.	-	.	Parent=Os09t0540400-02
Chr09	irgsp1_rep	mRNA	21274824	21276300	.	-	.	ID=Os09t0540500-01;Name=Os09t0540500-01;Locus_id=Os09g0540500;Oryzabase Gene Symbol Synonym(s)=OsMED4;Oryzabase Gene Name Synonym(s)=Mediator complex protein OsMED4;Note=Mediator complex%2C subunit Med4 domain containing protein.;Transcript_evidence=AK120729 (DDBJ%2C Best hit);ORF_evidence=A2Z3K7 (UniProt);GO=Biological Process: regulation of transcription from RNA polymerase II promoter (GO:0006357),Cellular Component: mediator complex (GO:0016592),Molecular Function: RNA polymerase II transcription cofactor activity (GO:0001104);InterPro=Mediator complex%2C subunit Med4 (IPR019258);NIAS_FLcDNA=J023003B04;Oryzabase=18686;Expression=AK120729;TENOR=Os09t0540500-01;KEGG=Os09t0540500-01
Chr09	irgsp1_rep	five_prime_UTR	21276273	21276300	.	-	.	Parent=Os09t0540500-01
Chr09	irgsp1_rep	CDS	21275028	21276272	.	-	0	Parent=Os09t0540500-01
Chr09	irgsp1_rep	three_prime_UTR	21274824	21275027	.	-	.	Parent=Os09t0540500-01
Chr09	irgsp1_rep	mRNA	21276447	21280591	.	+	.	ID=Os09t0540600-01;Name=Os09t0540600-01;Locus_id=Os09g0540600;Oryzabase Gene Symbol Synonym(s)=OsWD40-173%2C WD40-173%2C OsMed4_1%2C Med4_1;Oryzabase Gene Name Synonym(s)=Mediator 4_1;Note=Similar to WD-40 repeat protein MSI1.;Transcript_evidence=AK103397 (DDBJ%2C Best hit),AK101798 (DDBJ%2C Best hit);ORF_evidence=NP_001105188.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472),Histone-binding protein RBBP4 (IPR022052);NIAS_FLcDNA=J033127N09,J033066F16;Oryzabase=10854;TENOR=Os09t0540600-01
Chr09	irgsp1_rep	five_prime_UTR	21276447	21276524	.	+	.	Parent=Os09t0540600-01
Chr09	irgsp1_rep	CDS	21276525	21277148	.	+	0	Parent=Os09t0540600-01
Chr09	irgsp1_rep	CDS	21278227	21278370	.	+	0	Parent=Os09t0540600-01
Chr09	irgsp1_rep	CDS	21278726	21278850	.	+	0	Parent=Os09t0540600-01
Chr09	irgsp1_rep	CDS	21279483	21279587	.	+	1	Parent=Os09t0540600-01
Chr09	irgsp1_rep	CDS	21280148	21280382	.	+	1	Parent=Os09t0540600-01
Chr09	irgsp1_rep	three_prime_UTR	21280383	21280591	.	+	.	Parent=Os09t0540600-01
Chr09	irgsp1_rep	mRNA	21292024	21293396	.	+	.	ID=Os09t0540800-01;Name=Os09t0540800-01;Locus_id=Os09g0540800;RAP-DB Gene Symbol Synonym(s)=BZIP77%2C OsbZIP77%2C OsFD1;RAP-DB Gene Name Synonym(s)=b-ZIP TRANSCRIPTION FACTOR 77%2C b-ZIP transcription factor 77%2C basic leucine zipper (bZIP) transcription factor FD1%2C FD Transcription Factor 1;CGSNL Gene Symbol=BZIP77;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 77;Oryzabase Gene Symbol Synonym(s)=OsbZIP77%2C OsFD1%2C FD1;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 77%2C basic leucine zipper (bZIP) transcription factor FD1%2C FD Transcription Factor 1;Note=Basic leucine zipper (bZIP)-containing transcription factor%2C Promotion of flowering;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA-binding transcription factor activity (GO:0003700);InterPro=Basic-leucine zipper domain (IPR004827);Manual Curation=December 4%2C 2014;Literature_PMID=23324168,21804566;Oryzabase=10156;TENOR=Os09t0540800-00
Chr09	irgsp1_rep	five_prime_UTR	21292024	21292140	.	+	.	Parent=Os09t0540800-01
Chr09	irgsp1_rep	CDS	21292141	21292656	.	+	0	Parent=Os09t0540800-01
Chr09	irgsp1_rep	CDS	21292801	21292872	.	+	0	Parent=Os09t0540800-01
Chr09	irgsp1_rep	three_prime_UTR	21292873	21293396	.	+	.	Parent=Os09t0540800-01
Chr09	irgsp1_rep	mRNA	21300058	21304309	.	-	.	ID=Os09t0540900-01;Name=Os09t0540900-01;Locus_id=Os09g0540900;Note=Hypothetical conserved gene.;Transcript_evidence=AK287606 (DDBJ%2C Best hit);ORF_evidence=NP_001063811.2 (RefSeq);InterPro=RNA-binding protein Lupus La (IPR006630),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=J065056A01;TENOR=Os09t0540900-01;KEGG=Os09t0540900-01
Chr09	irgsp1_rep	five_prime_UTR	21304214	21304309	.	-	.	Parent=Os09t0540900-01
Chr09	irgsp1_rep	CDS	21303797	21304213	.	-	0	Parent=Os09t0540900-01
Chr09	irgsp1_rep	CDS	21302960	21303689	.	-	0	Parent=Os09t0540900-01
Chr09	irgsp1_rep	CDS	21302731	21302881	.	-	2	Parent=Os09t0540900-01
Chr09	irgsp1_rep	CDS	21302557	21302647	.	-	1	Parent=Os09t0540900-01
Chr09	irgsp1_rep	CDS	21300657	21300734	.	-	0	Parent=Os09t0540900-01
Chr09	irgsp1_rep	CDS	21300479	21300529	.	-	0	Parent=Os09t0540900-01
Chr09	irgsp1_rep	three_prime_UTR	21300459	21300478	.	-	.	Parent=Os09t0540900-01
Chr09	irgsp1_rep	three_prime_UTR	21300058	21300359	.	-	.	Parent=Os09t0540900-01
Chr09	irgsp1_rep	mRNA	21310132	21311479	.	+	.	ID=Os09t0541000-01;Name=Os09t0541000-01;Locus_id=Os09g0541000;CGSNL Gene Symbol=PIP2%3B7;CGSNL Gene Name=PLASMA MEMBRANE INTRINSIC PROTEIN 2%3B7;Oryzabase Gene Symbol Synonym(s)=OsPIP2%3B7%2C PIP2.7%2C PIP2-7%2C OsPIP2-6;Oryzabase Gene Name Synonym(s)=Probable aquaporin PIP2.7%2C Probable aquaporin PIP2-7%2C Plasma membrane intrinsic protein 2-7;Note=Similar to Aquaporin 2.;Transcript_evidence=AK109439 (DDBJ%2C Best hit),AK067792 (DDBJ%2C Best hit),AK104786 (DDBJ%2C Best hit);ORF_evidence=O65357 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: water transport (GO:0006833),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Aquaporin (IPR012269),Major intrinsic protein%2C conserved site (IPR022357),Aquaporin-like (IPR023271);NIAS_FLcDNA=006-310-H08,J013118N06,001-039-D11;Oryzabase=8515;Expression=AK109439;TENOR=Os09t0541000-01;KEGG=Os09t0541000-01
Chr09	irgsp1_rep	five_prime_UTR	21310132	21310165	.	+	.	Parent=Os09t0541000-01
Chr09	irgsp1_rep	CDS	21310166	21310915	.	+	0	Parent=Os09t0541000-01
Chr09	irgsp1_rep	CDS	21311017	21311139	.	+	0	Parent=Os09t0541000-01
Chr09	irgsp1_rep	three_prime_UTR	21311140	21311479	.	+	.	Parent=Os09t0541000-01
Chr09	irgsp1_rep	mRNA	21310135	21311400	.	+	.	ID=Os09t0541000-02;Name=Os09t0541000-02;Locus_id=Os09g0541000;CGSNL Gene Symbol=PIP2%3B7;CGSNL Gene Name=PLASMA MEMBRANE INTRINSIC PROTEIN 2%3B7;Oryzabase Gene Symbol Synonym(s)=OsPIP2%3B7%2C PIP2.7%2C PIP2-7%2C OsPIP2-6;Oryzabase Gene Name Synonym(s)=Probable aquaporin PIP2.7%2C Probable aquaporin PIP2-7%2C Plasma membrane intrinsic protein 2-7;Note=Similar to Plasma membrane intrinsic protein (Aquaporin).;Transcript_evidence=AK119719 (DDBJ%2C Best hit);ORF_evidence=B7EE03 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Major intrinsic protein%2C conserved site (IPR022357),Aquaporin-like (IPR023271);NIAS_FLcDNA=002-157-G06;Oryzabase=8515;Expression=AK119719;TENOR=Os09t0541000-02;KEGG=Os09t0541000-02
Chr09	irgsp1_rep	five_prime_UTR	21310135	21310165	.	+	.	Parent=Os09t0541000-02
Chr09	irgsp1_rep	CDS	21310166	21310594	.	+	0	Parent=Os09t0541000-02
Chr09	irgsp1_rep	CDS	21310694	21310915	.	+	0	Parent=Os09t0541000-02
Chr09	irgsp1_rep	CDS	21311017	21311139	.	+	0	Parent=Os09t0541000-02
Chr09	irgsp1_rep	three_prime_UTR	21311140	21311400	.	+	.	Parent=Os09t0541000-02
Chr09	irgsp1_rep	mRNA	21310165	21310918	.	-	.	ID=Os09t0541050-00;Name=Os09t0541050-00;Locus_id=Os09g0541050;Note=Hypothetical protein.;Transcript_evidence=FP096444 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0541050-00
Chr09	irgsp1_rep	CDS	21310165	21310918	.	-	0	Parent=Os09t0541050-00
Chr09	irgsp1_rep	mRNA	21313150	21313821	.	-	.	ID=Os09t0541100-00;Name=Os09t0541100-00;Locus_id=Os09g0541100;CGSNL Gene Symbol=UCL32;CGSNL Gene Name=UCLACYANIN-LIKE PROTEIN 32;Oryzabase Gene Symbol Synonym(s)=OsUCL32;Oryzabase Gene Name Synonym(s)=uclacyanin-like protein 32;Note=Cupredoxin domain containing protein.;Transcript_evidence=EU973863 (DDBJ);ORF_evidence=NP_001063813.1 (RefSeq);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);Oryzabase=9781;TENOR=Os09t0541100-00;KEGG=Os09t0541100-00
Chr09	irgsp1_rep	CDS	21313150	21313821	.	-	0	Parent=Os09t0541100-00
Chr09	irgsp1_rep	mRNA	21320562	21321181	.	+	.	ID=Os09t0541300-00;Name=Os09t0541300-00;Locus_id=Os09g0541300;Note=Conserved hypothetical protein.;Transcript_evidence=EU971785 (DDBJ);ORF_evidence=Q7XJ19 (UniProt);TENOR=Os09t0541300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	21320562	21320658	.	+	.	Parent=Os09t0541300-00
Chr09	irgsp1_rep	CDS	21320659	21321063	.	+	0	Parent=Os09t0541300-00
Chr09	irgsp1_rep	three_prime_UTR	21321064	21321181	.	+	.	Parent=Os09t0541300-00
Chr09	irgsp1_rep	mRNA	21330747	21332728	.	-	.	ID=Os09t0541500-01;Name=Os09t0541500-01;Locus_id=Os09g0541500;Note=Sedlin domain containing protein.;Transcript_evidence=AK060244 (DDBJ%2C Best hit);ORF_evidence=B6T271 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888),Cellular Component: intracellular (GO:0005622);InterPro=Sedlin (IPR006722),Longin-like (IPR011012);NIAS_FLcDNA=001-003-G05;Expression=AK060244;TENOR=Os09t0541500-01;KEGG=Os09t0541500-01
Chr09	irgsp1_rep	five_prime_UTR	21332597	21332728	.	-	.	Parent=Os09t0541500-01
Chr09	irgsp1_rep	CDS	21332564	21332596	.	-	0	Parent=Os09t0541500-01
Chr09	irgsp1_rep	CDS	21332339	21332435	.	-	0	Parent=Os09t0541500-01
Chr09	irgsp1_rep	CDS	21331787	21331865	.	-	2	Parent=Os09t0541500-01
Chr09	irgsp1_rep	CDS	21331382	21331463	.	-	1	Parent=Os09t0541500-01
Chr09	irgsp1_rep	CDS	21330907	21331047	.	-	0	Parent=Os09t0541500-01
Chr09	irgsp1_rep	three_prime_UTR	21330747	21330906	.	-	.	Parent=Os09t0541500-01
Chr09	irgsp1_rep	mRNA	21333249	21335104	.	-	.	ID=Os09t0541600-01;Name=Os09t0541600-01;Locus_id=Os09g0541600;Note=Conserved hypothetical protein.;Transcript_evidence=AK062762 (DDBJ%2C Best hit);ORF_evidence=B8BE21 (UniProt);NIAS_FLcDNA=001-106-H02;TENOR=Os09t0541600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	21335103	21335104	.	-	.	Parent=Os09t0541600-01
Chr09	irgsp1_rep	CDS	21334681	21335102	.	-	0	Parent=Os09t0541600-01
Chr09	irgsp1_rep	CDS	21333433	21333535	.	-	1	Parent=Os09t0541600-01
Chr09	irgsp1_rep	three_prime_UTR	21333249	21333432	.	-	.	Parent=Os09t0541600-01
Chr09	irgsp1_rep	mRNA	21336572	21338480	.	+	.	ID=Os09t0541700-01;Name=Os09t0541700-01;Locus_id=Os09g0541700;Note=Similar to mRNA%2C clone: RTFL01-25-P14.;Transcript_evidence=AK104841 (DDBJ%2C Best hit);ORF_evidence=E4MY13 (UniProt);GO=Biological Process: response to stress (GO:0006950);InterPro=UspA (IPR006016);NIAS_FLcDNA=001-042-F05;Expression=AK104841;TENOR=Os09t0541700-01;KEGG=Os09t0541700-01
Chr09	irgsp1_rep	five_prime_UTR	21336572	21336741	.	+	.	Parent=Os09t0541700-01
Chr09	irgsp1_rep	CDS	21336742	21336877	.	+	0	Parent=Os09t0541700-01
Chr09	irgsp1_rep	CDS	21337403	21337521	.	+	2	Parent=Os09t0541700-01
Chr09	irgsp1_rep	CDS	21337757	21337814	.	+	0	Parent=Os09t0541700-01
Chr09	irgsp1_rep	CDS	21337915	21337992	.	+	2	Parent=Os09t0541700-01
Chr09	irgsp1_rep	CDS	21338098	21338291	.	+	2	Parent=Os09t0541700-01
Chr09	irgsp1_rep	three_prime_UTR	21338292	21338480	.	+	.	Parent=Os09t0541700-01
Chr09	irgsp1_rep	mRNA	21336651	21338473	.	+	.	ID=Os09t0541700-02;Name=Os09t0541700-02;Locus_id=Os09g0541700;Note=Similar to mRNA%2C clone: RTFL01-25-P14.;Transcript_evidence=AK064928 (DDBJ%2C Best hit);ORF_evidence=E4MY13 (UniProt);GO=Biological Process: response to stress (GO:0006950);InterPro=UspA (IPR006016);NIAS_FLcDNA=J013000O02;Expression=AK064928;TENOR=Os09t0541700-02;KEGG=Os09t0541700-02
Chr09	irgsp1_rep	five_prime_UTR	21336651	21336741	.	+	.	Parent=Os09t0541700-02
Chr09	irgsp1_rep	CDS	21336742	21336877	.	+	0	Parent=Os09t0541700-02
Chr09	irgsp1_rep	CDS	21337403	21337521	.	+	2	Parent=Os09t0541700-02
Chr09	irgsp1_rep	CDS	21337757	21337814	.	+	0	Parent=Os09t0541700-02
Chr09	irgsp1_rep	CDS	21337915	21337992	.	+	2	Parent=Os09t0541700-02
Chr09	irgsp1_rep	CDS	21338098	21338291	.	+	2	Parent=Os09t0541700-02
Chr09	irgsp1_rep	three_prime_UTR	21338292	21338473	.	+	.	Parent=Os09t0541700-02
Chr09	irgsp1_rep	mRNA	21338841	21342208	.	-	.	ID=Os09t0541900-01;Name=Os09t0541900-01;Locus_id=Os09g0541900;Note=Similar to 26S proteasome subunit RPN3a.;Transcript_evidence=AK101536 (DDBJ%2C Best hit);ORF_evidence=B6TAE2 (UniProt);GO=Biological Process: regulation of protein catabolic process (GO:0042176),Cellular Component: proteasome complex (GO:0000502),Molecular Function: protein binding (GO:0005515),Molecular Function: enzyme regulator activity (GO:0030234);InterPro=Proteasome component (PCI) domain (IPR000717),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),PCI/PINT associated module (IPR013143),26S proteasome regulatory subunit%2C C-terminal (IPR013586);NIAS_FLcDNA=J033048E17;Expression=AK101536;TENOR=Os09t0541900-01;KEGG=Os09t0541900-01
Chr09	irgsp1_rep	five_prime_UTR	21342097	21342208	.	-	.	Parent=Os09t0541900-01
Chr09	irgsp1_rep	CDS	21342018	21342096	.	-	0	Parent=Os09t0541900-01
Chr09	irgsp1_rep	CDS	21341697	21341887	.	-	2	Parent=Os09t0541900-01
Chr09	irgsp1_rep	CDS	21340677	21340814	.	-	0	Parent=Os09t0541900-01
Chr09	irgsp1_rep	CDS	21340467	21340603	.	-	0	Parent=Os09t0541900-01
Chr09	irgsp1_rep	CDS	21340265	21340319	.	-	1	Parent=Os09t0541900-01
Chr09	irgsp1_rep	CDS	21340072	21340182	.	-	0	Parent=Os09t0541900-01
Chr09	irgsp1_rep	CDS	21339686	21339925	.	-	0	Parent=Os09t0541900-01
Chr09	irgsp1_rep	CDS	21339091	21339603	.	-	0	Parent=Os09t0541900-01
Chr09	irgsp1_rep	three_prime_UTR	21338841	21339090	.	-	.	Parent=Os09t0541900-01
Chr09	irgsp1_rep	mRNA	21338806	21342170	.	-	.	ID=Os09t0541900-02;Name=Os09t0541900-02;Locus_id=Os09g0541900;Note=Similar to 26S proteasome subunit RPN3a.;Transcript_evidence=AK100985 (DDBJ%2C Best hit);ORF_evidence=B6TAE2 (UniProt);GO=Biological Process: regulation of protein catabolic process (GO:0042176),Cellular Component: proteasome complex (GO:0000502),Molecular Function: protein binding (GO:0005515),Molecular Function: enzyme regulator activity (GO:0030234);InterPro=Proteasome component (PCI) domain (IPR000717),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),PCI/PINT associated module (IPR013143),26S proteasome regulatory subunit%2C C-terminal (IPR013586);NIAS_FLcDNA=J023145D07;Expression=AK100985;TENOR=Os09t0541900-02;KEGG=Os09t0541900-02
Chr09	irgsp1_rep	five_prime_UTR	21342097	21342170	.	-	.	Parent=Os09t0541900-02
Chr09	irgsp1_rep	CDS	21342018	21342096	.	-	0	Parent=Os09t0541900-02
Chr09	irgsp1_rep	CDS	21341697	21341887	.	-	2	Parent=Os09t0541900-02
Chr09	irgsp1_rep	CDS	21340677	21340814	.	-	0	Parent=Os09t0541900-02
Chr09	irgsp1_rep	CDS	21340467	21340603	.	-	0	Parent=Os09t0541900-02
Chr09	irgsp1_rep	CDS	21340265	21340319	.	-	1	Parent=Os09t0541900-02
Chr09	irgsp1_rep	CDS	21340072	21340182	.	-	0	Parent=Os09t0541900-02
Chr09	irgsp1_rep	CDS	21339686	21339925	.	-	0	Parent=Os09t0541900-02
Chr09	irgsp1_rep	CDS	21339091	21339603	.	-	0	Parent=Os09t0541900-02
Chr09	irgsp1_rep	three_prime_UTR	21338806	21339090	.	-	.	Parent=Os09t0541900-02
Chr09	irgsp1_rep	mRNA	21338943	21340189	.	-	.	ID=Os09t0541900-03;Name=Os09t0541900-03;Locus_id=Os09g0541900;Note=Similar to cDNA clone:J023145D07%2C full insert sequence.;Transcript_evidence=AK059017 (DDBJ%2C Best hit);ORF_evidence=B7ER70 (UniProt);GO=Biological Process: regulation of protein catabolic process (GO:0042176),Cellular Component: proteasome complex (GO:0000502),Molecular Function: protein binding (GO:0005515),Molecular Function: enzyme regulator activity (GO:0030234);InterPro=Proteasome component (PCI) domain (IPR000717),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),PCI/PINT associated module (IPR013143),26S proteasome regulatory subunit%2C C-terminal (IPR013586);NIAS_FLcDNA=001-021-A11;Expression=AK059017;TENOR=Os09t0541900-03;KEGG=Os09t0541900-03
Chr09	irgsp1_rep	five_prime_UTR	21340189	21340189	.	-	.	Parent=Os09t0541900-03
Chr09	irgsp1_rep	CDS	21340072	21340188	.	-	0	Parent=Os09t0541900-03
Chr09	irgsp1_rep	CDS	21339686	21339925	.	-	0	Parent=Os09t0541900-03
Chr09	irgsp1_rep	CDS	21339091	21339603	.	-	0	Parent=Os09t0541900-03
Chr09	irgsp1_rep	three_prime_UTR	21338943	21339090	.	-	.	Parent=Os09t0541900-03
Chr09	irgsp1_rep	mRNA	21343538	21346643	.	-	.	ID=Os09t0542000-01;Name=Os09t0542000-01;Locus_id=Os09g0542000;CGSNL Gene Symbol=ALBA7;CGSNL Gene Name=ACETYLATION LOWERS BINDING AFFINITY 7;Oryzabase Gene Symbol Synonym(s)=OsAlba7%2C Alba7;Oryzabase Gene Name Synonym(s)=acetylation lowers binding affinity protein 7%2C acetylation lowers binding affinity 7%2C Alba family protein 7;Note=Similar to Ribonuclease P.;Transcript_evidence=AK102114 (DDBJ%2C Best hit);ORF_evidence=B6T7F1 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=DNA/RNA-binding protein Alba-like (IPR002775);NIAS_FLcDNA=J033084H19;Oryzabase=22407;TENOR=Os09t0542000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	21346569	21346643	.	-	.	Parent=Os09t0542000-01
Chr09	irgsp1_rep	five_prime_UTR	21346455	21346469	.	-	.	Parent=Os09t0542000-01
Chr09	irgsp1_rep	CDS	21346332	21346454	.	-	0	Parent=Os09t0542000-01
Chr09	irgsp1_rep	CDS	21345218	21345298	.	-	0	Parent=Os09t0542000-01
Chr09	irgsp1_rep	CDS	21345057	21345145	.	-	0	Parent=Os09t0542000-01
Chr09	irgsp1_rep	CDS	21344897	21344971	.	-	1	Parent=Os09t0542000-01
Chr09	irgsp1_rep	CDS	21344499	21344560	.	-	1	Parent=Os09t0542000-01
Chr09	irgsp1_rep	CDS	21344343	21344420	.	-	2	Parent=Os09t0542000-01
Chr09	irgsp1_rep	CDS	21344066	21344266	.	-	2	Parent=Os09t0542000-01
Chr09	irgsp1_rep	CDS	21343872	21343972	.	-	2	Parent=Os09t0542000-01
Chr09	irgsp1_rep	three_prime_UTR	21343538	21343871	.	-	.	Parent=Os09t0542000-01
Chr09	irgsp1_rep	mRNA	21347264	21350949	.	-	.	ID=Os09t0542100-01;Name=Os09t0542100-01;Locus_id=Os09g0542100;Note=Peptidase A1 domain containing protein.;Transcript_evidence=AK105001 (DDBJ%2C Best hit);ORF_evidence=Q01MD1 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=001-004-D11;Expression=AK105001;TENOR=Os09t0542100-01;KEGG=Os09t0542100-01
Chr09	irgsp1_rep	five_prime_UTR	21350924	21350949	.	-	.	Parent=Os09t0542100-01
Chr09	irgsp1_rep	CDS	21350723	21350923	.	-	0	Parent=Os09t0542100-01
Chr09	irgsp1_rep	CDS	21350588	21350607	.	-	0	Parent=Os09t0542100-01
Chr09	irgsp1_rep	CDS	21350342	21350474	.	-	1	Parent=Os09t0542100-01
Chr09	irgsp1_rep	CDS	21349604	21349839	.	-	0	Parent=Os09t0542100-01
Chr09	irgsp1_rep	CDS	21349306	21349530	.	-	1	Parent=Os09t0542100-01
Chr09	irgsp1_rep	CDS	21349094	21349229	.	-	1	Parent=Os09t0542100-01
Chr09	irgsp1_rep	CDS	21348937	21349010	.	-	0	Parent=Os09t0542100-01
Chr09	irgsp1_rep	CDS	21348755	21348854	.	-	1	Parent=Os09t0542100-01
Chr09	irgsp1_rep	CDS	21348611	21348668	.	-	0	Parent=Os09t0542100-01
Chr09	irgsp1_rep	CDS	21347914	21347985	.	-	2	Parent=Os09t0542100-01
Chr09	irgsp1_rep	CDS	21347605	21347822	.	-	2	Parent=Os09t0542100-01
Chr09	irgsp1_rep	three_prime_UTR	21347264	21347604	.	-	.	Parent=Os09t0542100-01
Chr09	irgsp1_rep	mRNA	21355221	21357846	.	-	.	ID=Os09t0542200-01;Name=Os09t0542200-01;Locus_id=Os09g0542200;Note=Thioredoxin-like fold domain containing protein.;Transcript_evidence=AK064887 (DDBJ%2C Best hit);ORF_evidence=B6U346 (UniProt);InterPro=Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=J013000K12;TENOR=Os09t0542200-01
Chr09	irgsp1_rep	five_prime_UTR	21357736	21357846	.	-	.	Parent=Os09t0542200-01
Chr09	irgsp1_rep	CDS	21357446	21357735	.	-	0	Parent=Os09t0542200-01
Chr09	irgsp1_rep	CDS	21356001	21356103	.	-	1	Parent=Os09t0542200-01
Chr09	irgsp1_rep	CDS	21355591	21355749	.	-	0	Parent=Os09t0542200-01
Chr09	irgsp1_rep	CDS	21355309	21355470	.	-	0	Parent=Os09t0542200-01
Chr09	irgsp1_rep	three_prime_UTR	21355221	21355308	.	-	.	Parent=Os09t0542200-01
Chr09	irgsp1_rep	mRNA	21355241	21357810	.	-	.	ID=Os09t0542200-02;Name=Os09t0542200-02;Locus_id=Os09g0542200;Note=Thioredoxin-like fold domain containing protein.;Transcript_evidence=AK104804 (DDBJ%2C Best hit);ORF_evidence=B6U346 (UniProt);InterPro=Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=001-040-C11;TENOR=Os09t0542200-02
Chr09	irgsp1_rep	five_prime_UTR	21357736	21357810	.	-	.	Parent=Os09t0542200-02
Chr09	irgsp1_rep	CDS	21357446	21357735	.	-	0	Parent=Os09t0542200-02
Chr09	irgsp1_rep	CDS	21356001	21356103	.	-	1	Parent=Os09t0542200-02
Chr09	irgsp1_rep	CDS	21355591	21355749	.	-	0	Parent=Os09t0542200-02
Chr09	irgsp1_rep	CDS	21355309	21355470	.	-	0	Parent=Os09t0542200-02
Chr09	irgsp1_rep	three_prime_UTR	21355241	21355308	.	-	.	Parent=Os09t0542200-02
Chr09	irgsp1_rep	mRNA	21367019	21370174	.	+	.	ID=Os09t0542500-00;Name=Os09t0542500-00;Locus_id=Os09g0542500;Note=Domain of unknown function DUF632 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7X997 (UniProt);InterPro=Domain of unknown function DUF632 (IPR006867);TENOR=Os09t0542500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	21367019	21367358	.	+	0	Parent=Os09t0542500-00
Chr09	irgsp1_rep	CDS	21368125	21368354	.	+	2	Parent=Os09t0542500-00
Chr09	irgsp1_rep	CDS	21369011	21369234	.	+	0	Parent=Os09t0542500-00
Chr09	irgsp1_rep	CDS	21369322	21370174	.	+	1	Parent=Os09t0542500-00
Chr09	irgsp1_rep	mRNA	21369315	21370175	.	-	.	ID=Os09t0542550-00;Name=Os09t0542550-00;Locus_id=Os09g0542550;Note=Hypothetical protein.;Transcript_evidence=tplb0058a22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0542550-00
Chr09	irgsp1_rep	five_prime_UTR	21370024	21370175	.	-	.	Parent=Os09t0542550-00
Chr09	irgsp1_rep	CDS	21369808	21370023	.	-	0	Parent=Os09t0542550-00
Chr09	irgsp1_rep	three_prime_UTR	21369315	21369807	.	-	.	Parent=Os09t0542550-00
Chr09	irgsp1_rep	mRNA	21370810	21372435	.	-	.	ID=Os09t0542600-01;Name=Os09t0542600-01;Locus_id=Os09g0542600;Note=Similar to RING-H2 finger protein ATL1I.;Transcript_evidence=AK060109 (DDBJ%2C Best hit);ORF_evidence=B8BE25 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=006-308-C10;Expression=AK060109;TENOR=Os09t0542600-01;KEGG=Os09t0542600-01 (EC:6.3.2.19)
Chr09	irgsp1_rep	five_prime_UTR	21372377	21372435	.	-	.	Parent=Os09t0542600-01
Chr09	irgsp1_rep	CDS	21372297	21372376	.	-	0	Parent=Os09t0542600-01
Chr09	irgsp1_rep	CDS	21372000	21372189	.	-	1	Parent=Os09t0542600-01
Chr09	irgsp1_rep	CDS	21371831	21371917	.	-	0	Parent=Os09t0542600-01
Chr09	irgsp1_rep	CDS	21371171	21371341	.	-	0	Parent=Os09t0542600-01
Chr09	irgsp1_rep	CDS	21370914	21371039	.	-	0	Parent=Os09t0542600-01
Chr09	irgsp1_rep	three_prime_UTR	21370810	21370913	.	-	.	Parent=Os09t0542600-01
Chr09	irgsp1_rep	mRNA	21375813	21378542	.	-	.	ID=Os09t0542700-00;Name=Os09t0542700-00;Locus_id=Os09g0542700;Note=Protein phosphatase 2A%2C regulatory B subunit%2C B56 family protein.;Transcript_evidence=FP092151 (DDBJ);ORF_evidence=NP_001063823.2 (RefSeq);GO=Biological Process: signal transduction (GO:0007165),Cellular Component: protein phosphatase type 2A complex (GO:0000159),Molecular Function: binding (GO:0005488),Molecular Function: protein phosphatase type 2A regulator activity (GO:0008601);InterPro=Protein phosphatase 2A%2C regulatory B subunit%2C B56 (IPR002554),Armadillo-type fold (IPR016024);TENOR=Os09t0542700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	21378420	21378542	.	-	.	Parent=Os09t0542700-00
Chr09	irgsp1_rep	CDS	21377298	21378419	.	-	0	Parent=Os09t0542700-00
Chr09	irgsp1_rep	CDS	21375813	21376139	.	-	0	Parent=Os09t0542700-00
Chr09	irgsp1_rep	mRNA	21381391	21383318	.	-	.	ID=Os09t0542800-01;Name=Os09t0542800-01;Locus_id=Os09g0542800;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK240855 (DDBJ%2C Best hit);ORF_evidence=XP_002890377.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J065021H02;TENOR=Os09t0542800-01;KEGG=Os09t0542800-01
Chr09	irgsp1_rep	five_prime_UTR	21383288	21383318	.	-	.	Parent=Os09t0542800-01
Chr09	irgsp1_rep	CDS	21381656	21383287	.	-	0	Parent=Os09t0542800-01
Chr09	irgsp1_rep	three_prime_UTR	21381391	21381655	.	-	.	Parent=Os09t0542800-01
Chr09	irgsp1_rep	mRNA	21386018	21387018	.	+	.	ID=Os09t0542900-01;Name=Os09t0542900-01;Locus_id=Os09g0542900;Note=Conserved hypothetical protein.;Transcript_evidence=AK073400 (DDBJ%2C Best hit);ORF_evidence=B8BE26 (UniProt);NIAS_FLcDNA=J033044N08;Expression=AK073400;TENOR=Os09t0542900-01;KEGG=Os09t0542900-01
Chr09	irgsp1_rep	five_prime_UTR	21386018	21386065	.	+	.	Parent=Os09t0542900-01
Chr09	irgsp1_rep	CDS	21386066	21386830	.	+	0	Parent=Os09t0542900-01
Chr09	irgsp1_rep	three_prime_UTR	21386831	21387018	.	+	.	Parent=Os09t0542900-01
Chr09	irgsp1_rep	mRNA	21391774	21393569	.	+	.	ID=Os09t0543100-01;Name=Os09t0543100-01;Locus_id=Os09g0543100;CGSNL Gene Symbol=PLDdelta1;CGSNL Gene Name=PHOSPHOLIPASE D delta 1;Oryzabase Gene Symbol Synonym(s)=OsPLDdelta1%2C OsPLDdelta%2C OsSTA233;Oryzabase Gene Name Synonym(s)=phospholipase D delta;Note=Similar to predicted protein.;Transcript_evidence=AK109315 (DDBJ%2C Best hit);ORF_evidence=B9G4V1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),Phospholipase D (IPR015679),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=002-188-G03;Oryzabase=8697;TENOR=Os09t0543100-01
Chr09	irgsp1_rep	five_prime_UTR	21391774	21392078	.	+	.	Parent=Os09t0543100-01
Chr09	irgsp1_rep	CDS	21392079	21393038	.	+	0	Parent=Os09t0543100-01
Chr09	irgsp1_rep	CDS	21393535	21393569	.	+	0	Parent=Os09t0543100-01
Chr09	irgsp1_rep	mRNA	21391854	21397921	.	+	.	ID=Os09t0543100-02;Name=Os09t0543100-02;Locus_id=Os09g0543100;CGSNL Gene Symbol=PLDdelta1;CGSNL Gene Name=PHOSPHOLIPASE D delta 1;Oryzabase Gene Symbol Synonym(s)=OsPLDdelta1%2C OsPLDdelta%2C OsSTA233;Oryzabase Gene Name Synonym(s)=phospholipase D delta;Note=Similar to Phospholipase D nu-2 (Fragment).;Transcript_evidence=AK100579 (DDBJ%2C Best hit);ORF_evidence=B9G4V1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: phosphatidylcholine metabolic process (GO:0046470),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phospholipase D activity (GO:0004630),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),Phospholipase D/Transphosphatidylase (IPR001736),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),Phospholipase D%2C plant (IPR011402),Phospholipase D (IPR015679),C2 membrane targeting protein (IPR018029),Phospholipase D%2C C-terminal (IPR024632);NIAS_FLcDNA=J023105L14;Oryzabase=8697;Expression=AK100579;TENOR=Os09t0543100-02;KEGG=Os09t0543100-02
Chr09	irgsp1_rep	five_prime_UTR	21391854	21392078	.	+	.	Parent=Os09t0543100-02
Chr09	irgsp1_rep	CDS	21392079	21393038	.	+	0	Parent=Os09t0543100-02
Chr09	irgsp1_rep	CDS	21393535	21393648	.	+	0	Parent=Os09t0543100-02
Chr09	irgsp1_rep	CDS	21394102	21394299	.	+	0	Parent=Os09t0543100-02
Chr09	irgsp1_rep	CDS	21394445	21394720	.	+	0	Parent=Os09t0543100-02
Chr09	irgsp1_rep	CDS	21394807	21394875	.	+	0	Parent=Os09t0543100-02
Chr09	irgsp1_rep	CDS	21395031	21395178	.	+	0	Parent=Os09t0543100-02
Chr09	irgsp1_rep	CDS	21395473	21395621	.	+	2	Parent=Os09t0543100-02
Chr09	irgsp1_rep	CDS	21396296	21396454	.	+	0	Parent=Os09t0543100-02
Chr09	irgsp1_rep	CDS	21396928	21397125	.	+	0	Parent=Os09t0543100-02
Chr09	irgsp1_rep	CDS	21397340	21397633	.	+	0	Parent=Os09t0543100-02
Chr09	irgsp1_rep	three_prime_UTR	21397634	21397921	.	+	.	Parent=Os09t0543100-02
Chr09	irgsp1_rep	mRNA	21397472	21397922	.	+	.	ID=Os09t0543100-03;Name=Os09t0543100-03;Locus_id=Os09g0543100;CGSNL Gene Symbol=PLDdelta1;CGSNL Gene Name=PHOSPHOLIPASE D delta 1;Oryzabase Gene Symbol Synonym(s)=OsPLDdelta1%2C OsPLDdelta%2C OsSTA233;Oryzabase Gene Name Synonym(s)=phospholipase D delta;Note=Similar to predicted protein.;Transcript_evidence=AK058661 (DDBJ%2C Best hit);ORF_evidence=B9G4V1 (UniProt);InterPro=Phospholipase D (IPR015679),Phospholipase D%2C C-terminal (IPR024632);NIAS_FLcDNA=001-018-G04;Oryzabase=8697;Expression=AK058661;TENOR=Os09t0543100-03;KEGG=Os09t0543100-03
Chr09	irgsp1_rep	CDS	21397472	21397633	.	+	0	Parent=Os09t0543100-03
Chr09	irgsp1_rep	three_prime_UTR	21397634	21397922	.	+	.	Parent=Os09t0543100-03
Chr09	irgsp1_rep	mRNA	21409266	21410557	.	-	.	ID=Os09t0543400-00;Name=Os09t0543400-00;Locus_id=Os09g0543400;CGSNL Gene Symbol=ODCA;CGSNL Gene Name=ORNITHINE DECARBOXYLASE A;Oryzabase Gene Symbol Synonym(s)=ODCa%2C OsODC1%2C ODC1;Oryzabase Gene Name Synonym(s)=Ornithine decarboxylase a%2C ornithine decarboxylase 1;Note=Ornithine decarboxylase (EC 4.1.1.17).;Transcript_evidence=BT042764 (DDBJ);ORF_evidence=Q01N22 (UniProt);GO=Biological Process: polyamine biosynthetic process (GO:0006596),Molecular Function: catalytic activity (GO:0003824);InterPro=Ornithine/DAP/Arg decarboxylase (IPR000183),Ornithine decarboxylase (IPR002433),Alanine racemase/group IV decarboxylase%2C C-terminal (IPR009006),Orn/DAP/Arg decarboxylase 2%2C C-terminal (IPR022643),Orn/DAP/Arg decarboxylase 2%2C N-terminal (IPR022644),Orn/DAP/Arg decarboxylase 2%2C pyridoxal-phosphate binding site (IPR022653);Oryzabase=11220;TENOR=Os09t0543400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	21409271	21410557	.	-	0	Parent=Os09t0543400-00
Chr09	irgsp1_rep	three_prime_UTR	21409266	21409270	.	-	.	Parent=Os09t0543400-00
Chr09	irgsp1_rep	mRNA	21450584	21452639	.	+	.	ID=Os09t0543900-01;Name=Os09t0543900-01;Locus_id=Os09g0543900;CGSNL Gene Symbol=PHT3;CGSNL Gene Name=PUTRESCINE HYDROXYCINNAMOYL TRANSFERASE 3;Oryzabase Gene Symbol Synonym(s)=Os-PHT3%2C OsPHT3;Oryzabase Gene Name Synonym(s)=putrescine N-hydroxycinnamoyltransferase%2C putrescine hydroxycinnamoyl transferase 3;Note=Transferase family protein.;Transcript_evidence=AK109723 (DDBJ%2C Best hit);ORF_evidence=NP_001147611.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=002-146-B05;Oryzabase=21069;Expression=AK109723;TENOR=Os09t0543900-01;KEGG=Os09t0543900-01
Chr09	irgsp1_rep	five_prime_UTR	21450584	21450730	.	+	.	Parent=Os09t0543900-01
Chr09	irgsp1_rep	CDS	21450731	21452044	.	+	0	Parent=Os09t0543900-01
Chr09	irgsp1_rep	three_prime_UTR	21452045	21452639	.	+	.	Parent=Os09t0543900-01
Chr09	irgsp1_rep	mRNA	21450712	21452128	.	+	.	ID=Os09t0543900-02;Name=Os09t0543900-02;Locus_id=Os09g0543900;CGSNL Gene Symbol=PHT3;CGSNL Gene Name=PUTRESCINE HYDROXYCINNAMOYL TRANSFERASE 3;Oryzabase Gene Symbol Synonym(s)=Os-PHT3%2C OsPHT3;Oryzabase Gene Name Synonym(s)=putrescine N-hydroxycinnamoyltransferase%2C putrescine hydroxycinnamoyl transferase 3;Note=Transferase family protein.;Transcript_evidence=AK072013 (DDBJ%2C Best hit);ORF_evidence=NP_001147611.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J013104K15;Oryzabase=21069;Expression=AK072013;TENOR=Os09t0543900-02;KEGG=Os09t0543900-02
Chr09	irgsp1_rep	five_prime_UTR	21450712	21450730	.	+	.	Parent=Os09t0543900-02
Chr09	irgsp1_rep	CDS	21450731	21452044	.	+	0	Parent=Os09t0543900-02
Chr09	irgsp1_rep	three_prime_UTR	21452045	21452128	.	+	.	Parent=Os09t0543900-02
Chr09	irgsp1_rep	mRNA	21463619	21465476	.	+	.	ID=Os09t0544000-01;Name=Os09t0544000-01;Locus_id=Os09g0544000;Oryzabase Gene Symbol Synonym(s)=OsAT4c%2C AT4c;Oryzabase Gene Name Synonym(s)=putrescine hydroxycinnamoyl acyltransferase%2C putrescine/agmatine hydroxycinnamoyl acyltransferase%2C putrescine/ agmatine N-hydroxycinnamoyltransferase%2C feruloylputrescine synthase;Note=Transferase family protein.;Transcript_evidence=AK287893 (DDBJ%2C Best hit);ORF_evidence=NP_001147611.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J065209M11;Oryzabase=18251;TENOR=Os09t0544000-01;KEGG=Os09t0544000-01
Chr09	irgsp1_rep	five_prime_UTR	21463619	21463700	.	+	.	Parent=Os09t0544000-01
Chr09	irgsp1_rep	CDS	21463701	21465059	.	+	0	Parent=Os09t0544000-01
Chr09	irgsp1_rep	three_prime_UTR	21465060	21465476	.	+	.	Parent=Os09t0544000-01
Chr09	irgsp1_rep	mRNA	21488250	21495344	.	+	.	ID=Os09t0544300-01;Name=Os09t0544300-01;Locus_id=Os09g0544300;CGSNL Gene Symbol=ACTPK3;CGSNL Gene Name=ACT DOMAIN CONTAINING PROTEIN KINASE 3;Oryzabase Gene Symbol Synonym(s)=OsACTPK3;Oryzabase Gene Name Synonym(s)=ACT domain containing protein kinase 3;Note=ATMRK serine/threonine protein kinase-like domain containing protein.;Transcript_evidence=AK072690 (DDBJ%2C Best hit);ORF_evidence=NP_001151481.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: metabolic process (GO:0008152),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: amino acid binding (GO:0016597),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Amino acid-binding ACT (IPR002912),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023139F03;Oryzabase=22317;Expression=AK072690;TENOR=Os09t0544300-01;KEGG=Os09t0544300-01
Chr09	irgsp1_rep	five_prime_UTR	21488250	21488281	.	+	.	Parent=Os09t0544300-01
Chr09	irgsp1_rep	CDS	21488282	21488571	.	+	0	Parent=Os09t0544300-01
Chr09	irgsp1_rep	CDS	21488714	21488828	.	+	1	Parent=Os09t0544300-01
Chr09	irgsp1_rep	CDS	21489988	21490079	.	+	0	Parent=Os09t0544300-01
Chr09	irgsp1_rep	CDS	21490232	21490345	.	+	1	Parent=Os09t0544300-01
Chr09	irgsp1_rep	CDS	21490532	21490586	.	+	1	Parent=Os09t0544300-01
Chr09	irgsp1_rep	CDS	21490741	21490851	.	+	0	Parent=Os09t0544300-01
Chr09	irgsp1_rep	CDS	21491619	21491672	.	+	0	Parent=Os09t0544300-01
Chr09	irgsp1_rep	CDS	21491755	21491930	.	+	0	Parent=Os09t0544300-01
Chr09	irgsp1_rep	CDS	21492016	21492123	.	+	1	Parent=Os09t0544300-01
Chr09	irgsp1_rep	CDS	21492725	21492798	.	+	1	Parent=Os09t0544300-01
Chr09	irgsp1_rep	CDS	21492893	21493068	.	+	2	Parent=Os09t0544300-01
Chr09	irgsp1_rep	CDS	21493562	21493657	.	+	0	Parent=Os09t0544300-01
Chr09	irgsp1_rep	CDS	21493927	21494007	.	+	0	Parent=Os09t0544300-01
Chr09	irgsp1_rep	CDS	21494106	21494159	.	+	0	Parent=Os09t0544300-01
Chr09	irgsp1_rep	CDS	21494639	21494773	.	+	0	Parent=Os09t0544300-01
Chr09	irgsp1_rep	CDS	21494846	21494926	.	+	0	Parent=Os09t0544300-01
Chr09	irgsp1_rep	three_prime_UTR	21494927	21495344	.	+	.	Parent=Os09t0544300-01
Chr09	irgsp1_rep	mRNA	21496586	21505763	.	+	.	ID=Os09t0544400-00;Name=Os09t0544400-00;Locus_id=Os09g0544400;Note=Similar to glutathione transferase16.;Transcript_evidence=AF244681 (DDBJ);ORF_evidence=NP_001105510.1 (RefSeq);InterPro=Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);TENOR=Os09t0544400-00;KEGG=Os09t0544400-00
Chr09	irgsp1_rep	five_prime_UTR	21496586	21496614	.	+	.	Parent=Os09t0544400-00
Chr09	irgsp1_rep	CDS	21496615	21496770	.	+	0	Parent=Os09t0544400-00
Chr09	irgsp1_rep	CDS	21496864	21496915	.	+	0	Parent=Os09t0544400-00
Chr09	irgsp1_rep	CDS	21498235	21505763	.	+	2	Parent=Os09t0544400-00
Chr09	irgsp1_rep	mRNA	21524369	21525566	.	-	.	ID=Os09t0544700-00;Name=Os09t0544700-00;Locus_id=Os09g0544700;Note=Protein of unknown function DUF674 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XXM9 (UniProt);InterPro=Protein of unknown function DUF674 (IPR007750);TENOR=Os09t0544700-00
Chr09	irgsp1_rep	CDS	21524853	21525566	.	-	0	Parent=Os09t0544700-00
Chr09	irgsp1_rep	CDS	21524369	21524458	.	-	0	Parent=Os09t0544700-00
Chr09	irgsp1_rep	mRNA	21524851	21525577	.	+	.	ID=Os09t0544750-00;Name=Os09t0544750-00;Locus_id=Os09g0544750;Note=Hypothetical gene.;Transcript_evidence=BT085097 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0544750-00
Chr09	irgsp1_rep	five_prime_UTR	21524851	21524852	.	+	.	Parent=Os09t0544750-00
Chr09	irgsp1_rep	CDS	21524853	21525577	.	+	0	Parent=Os09t0544750-00
Chr09	irgsp1_rep	mRNA	21525976	21529859	.	-	.	ID=Os09t0544800-01;Name=Os09t0544800-01;Locus_id=Os09g0544800;RAP-DB Gene Symbol Synonym(s)=Os RopGEF7%2C OsRopGEF7%2C OsRacGEF2;RAP-DB Gene Name Synonym(s)=guanine nucleotide exchange factor for Rop 7%2C small GTPase Rac/ROP guanine nucleotide exchange factor 2;CGSNL Gene Symbol=ROPGEF7;CGSNL Gene Name=ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 7;Oryzabase Gene Symbol Synonym(s)=Os RopGEF7%2C OsRopGEF7%2C RopGEF7%2C OsRacGEF2%2C OsRacGEF1%2C RacGEF1;Oryzabase Gene Name Synonym(s)=GEF for ROP 7%2C guanine nucleotide exchange factor for Rop 7%2C Rop-specific GEF7%2C Rop-specific guanine nucleotide exchange factor 7%2C small GTPase Rac/ROP guanine nucleotide exchange factor 2%2C Rac GDP/GTP exchange factor 1;Note=Small GTPase Rac/ROP guanine nucleotide exchange factor%2C Signal transduction;Transcript_evidence=AK105420;ORF_evidence=Q0IZW9;GO=Molecular Function: Rho guanyl-nucleotide exchange factor activity (GO:0005089);InterPro=PRONE domain (IPR005512);NIAS_FLcDNA=001-124-B07;Manual Curation=March 9%2C 2016;Literature_PMID=26251883;Oryzabase=11449,13615;Expression=AK105420;TENOR=Os09t0544800-01;KEGG=Os09t0544800-01
Chr09	irgsp1_rep	five_prime_UTR	21529684	21529859	.	-	.	Parent=Os09t0544800-01
Chr09	irgsp1_rep	CDS	21529431	21529683	.	-	0	Parent=Os09t0544800-01
Chr09	irgsp1_rep	CDS	21529206	21529322	.	-	2	Parent=Os09t0544800-01
Chr09	irgsp1_rep	CDS	21528573	21529111	.	-	2	Parent=Os09t0544800-01
Chr09	irgsp1_rep	CDS	21527168	21527518	.	-	0	Parent=Os09t0544800-01
Chr09	irgsp1_rep	CDS	21526479	21526904	.	-	0	Parent=Os09t0544800-01
Chr09	irgsp1_rep	three_prime_UTR	21525976	21526478	.	-	.	Parent=Os09t0544800-01
Chr09	irgsp1_rep	mRNA	21538001	21542921	.	-	.	ID=Os09t0544900-01;Name=Os09t0544900-01;Locus_id=Os09g0544900;Note=MaoC-like dehydratase domain containing protein.;Transcript_evidence=AK071684 (DDBJ%2C Best hit);ORF_evidence=B4FP93 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=MaoC-like dehydratase (IPR002539);NIAS_FLcDNA=J023108B15;Expression=AK071684;TENOR=Os09t0544900-01;KEGG=Os09t0544900-01
Chr09	irgsp1_rep	five_prime_UTR	21542834	21542921	.	-	.	Parent=Os09t0544900-01
Chr09	irgsp1_rep	CDS	21542762	21542833	.	-	0	Parent=Os09t0544900-01
Chr09	irgsp1_rep	CDS	21542649	21542671	.	-	0	Parent=Os09t0544900-01
Chr09	irgsp1_rep	CDS	21542426	21542531	.	-	1	Parent=Os09t0544900-01
Chr09	irgsp1_rep	CDS	21541468	21541544	.	-	0	Parent=Os09t0544900-01
Chr09	irgsp1_rep	CDS	21541211	21541283	.	-	1	Parent=Os09t0544900-01
Chr09	irgsp1_rep	CDS	21540426	21540465	.	-	0	Parent=Os09t0544900-01
Chr09	irgsp1_rep	CDS	21539762	21539834	.	-	2	Parent=Os09t0544900-01
Chr09	irgsp1_rep	CDS	21539521	21539674	.	-	1	Parent=Os09t0544900-01
Chr09	irgsp1_rep	CDS	21539152	21539219	.	-	0	Parent=Os09t0544900-01
Chr09	irgsp1_rep	CDS	21538388	21538561	.	-	1	Parent=Os09t0544900-01
Chr09	irgsp1_rep	CDS	21538220	21538307	.	-	1	Parent=Os09t0544900-01
Chr09	irgsp1_rep	three_prime_UTR	21538001	21538219	.	-	.	Parent=Os09t0544900-01
Chr09	irgsp1_rep	mRNA	21544362	21547225	.	-	.	ID=Os09t0545000-01;Name=Os09t0545000-01;Locus_id=Os09g0545000;CGSNL Gene Symbol=CHX3;CGSNL Gene Name=CATION/H+ EXCHANGER  3;Oryzabase Gene Symbol Synonym(s)=OsSTA234%2C STA234%2C OsCHX03%2C CHX03%2C OsCHX3;Oryzabase Gene Name Synonym(s)=cation/H+ exchanger  3;Note=Cation/H+ exchanger domain containing protein.;Transcript_evidence=AK069882 (DDBJ%2C Best hit);ORF_evidence=B8AZU5 (UniProt);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: solute:hydrogen antiporter activity (GO:0015299);InterPro=Cation/H+ exchanger (IPR006153);NIAS_FLcDNA=J023035P09;Oryzabase=19505;Expression=AK069882;TENOR=Os09t0545000-01;KEGG=Os09t0545000-01
Chr09	irgsp1_rep	five_prime_UTR	21547054	21547225	.	-	.	Parent=Os09t0545000-01
Chr09	irgsp1_rep	CDS	21545887	21547053	.	-	0	Parent=Os09t0545000-01
Chr09	irgsp1_rep	CDS	21544501	21545817	.	-	0	Parent=Os09t0545000-01
Chr09	irgsp1_rep	three_prime_UTR	21544362	21544500	.	-	.	Parent=Os09t0545000-01
Chr09	irgsp1_rep	mRNA	21544348	21547135	.	-	.	ID=Os09t0545000-02;Name=Os09t0545000-02;Locus_id=Os09g0545000;CGSNL Gene Symbol=CHX3;CGSNL Gene Name=CATION/H+ EXCHANGER  3;Oryzabase Gene Symbol Synonym(s)=OsSTA234%2C STA234%2C OsCHX03%2C CHX03%2C OsCHX3;Oryzabase Gene Name Synonym(s)=cation/H+ exchanger  3;Note=Cation/H+ exchanger domain containing protein.;Transcript_evidence=AK121270 (DDBJ%2C Best hit);ORF_evidence=B8AZU5 (UniProt);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: solute:hydrogen antiporter activity (GO:0015299);InterPro=Cation/H+ exchanger (IPR006153);NIAS_FLcDNA=J023105L07;Oryzabase=19505;TENOR=Os09t0545000-02
Chr09	irgsp1_rep	five_prime_UTR	21547054	21547135	.	-	.	Parent=Os09t0545000-02
Chr09	irgsp1_rep	CDS	21545887	21547053	.	-	0	Parent=Os09t0545000-02
Chr09	irgsp1_rep	CDS	21544501	21545817	.	-	0	Parent=Os09t0545000-02
Chr09	irgsp1_rep	three_prime_UTR	21544348	21544500	.	-	.	Parent=Os09t0545000-02
Chr09	irgsp1_rep	mRNA	21547762	21548606	.	+	.	ID=Os09t0545051-00;Name=Os09t0545051-00;Locus_id=Os09g0545051;Note=Conserved hypothetical protein.;Transcript_evidence=BT086332 (DDBJ);ORF_evidence=Q2QTS5 (UniProt);TENOR=Os09t0545051-00
Chr09	irgsp1_rep	five_prime_UTR	21547762	21548072	.	+	.	Parent=Os09t0545051-00
Chr09	irgsp1_rep	CDS	21548073	21548606	.	+	0	Parent=Os09t0545051-00
Chr09	irgsp1_rep	mRNA	21550760	21551950	.	-	.	ID=Os09t0545100-00;Name=Os09t0545100-00;Locus_id=Os09g0545100;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FNE3 (UniProt);TENOR=Os09t0545100-00;KEGG=Os09t0545100-00
Chr09	irgsp1_rep	CDS	21551672	21551950	.	-	0	Parent=Os09t0545100-00
Chr09	irgsp1_rep	CDS	21550760	21551059	.	-	0	Parent=Os09t0545100-00
Chr09	irgsp1_rep	mRNA	21561515	21561941	.	+	.	ID=Os09t0545250-00;Name=Os09t0545250-00;Locus_id=Os09g0545250;Note=Hypothetical protein.;Transcript_evidence=EU976224 (DDBJ);ORF_evidence=GeneMark;TENOR=Os09t0545250-00
Chr09	irgsp1_rep	CDS	21561515	21561941	.	+	0	Parent=Os09t0545250-00
Chr09	irgsp1_rep	mRNA	21565770	21566461	.	-	.	ID=Os09t0545300-01;Name=Os09t0545300-01;Locus_id=Os09g0545300;RAP-DB Gene Symbol Synonym(s)=SAUR39%2C OsSAUR39;RAP-DB Gene Name Synonym(s)=SMALL AUXIN-UP RNA 39%2C Small auxin-up RNA 39;CGSNL Gene Symbol=SAUR39;CGSNL Gene Name=SMALL AUXIN-UP RNA 39;Oryzabase Gene Symbol Synonym(s)=OsSAUR39;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 39;Note=SAUR family protein%2C Negative regulator of auxin synthesis and transport;Transcript_evidence=AK241264 (Genbank);ORF_evidence=B7F8P5 (UniProt);InterPro=Auxin responsive SAUR protein (IPR003676);NIAS_FLcDNA=J065132A09;Manual Curation=October 13%2C 2009;Literature_PMID=19700562;Oryzabase=9164;TENOR=Os09t0545300-01;KEGG=Os09t0545300-01
Chr09	irgsp1_rep	five_prime_UTR	21566408	21566461	.	-	.	Parent=Os09t0545300-01
Chr09	irgsp1_rep	CDS	21565892	21566407	.	-	0	Parent=Os09t0545300-01
Chr09	irgsp1_rep	three_prime_UTR	21565770	21565891	.	-	.	Parent=Os09t0545300-01
Chr09	irgsp1_rep	mRNA	21568278	21568845	.	-	.	ID=Os09t0545320-01;Name=Os09t0545320-01;Locus_id=Os09g0545320;Note=Conserved hypothetical protein.;Transcript_evidence=EU948702 (DDBJ);ORF_evidence=Q5VPQ9 (UniProt);TENOR=Os09t0545320-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	21568767	21568845	.	-	.	Parent=Os09t0545320-01
Chr09	irgsp1_rep	CDS	21568278	21568766	.	-	0	Parent=Os09t0545320-01
Chr09	irgsp1_rep	mRNA	21568697	21570887	.	+	.	ID=Os09t0545400-01;Name=Os09t0545400-01;Locus_id=Os09g0545400;CGSNL Gene Symbol=SAUR40;CGSNL Gene Name=SMALL AUXIN-UP RNA 40;Oryzabase Gene Symbol Synonym(s)=OsSAUR40;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 40;Note=Similar to Auxin induced protein.;Transcript_evidence=AK064274 (DDBJ%2C Best hit);ORF_evidence=B8BE32 (UniProt);NIAS_FLcDNA=002-105-F01;Oryzabase=9165;Expression=AK064274;TENOR=Os09t0545400-01;KEGG=Os09t0545400-01
Chr09	irgsp1_rep	five_prime_UTR	21568697	21568854	.	+	.	Parent=Os09t0545400-01
Chr09	irgsp1_rep	five_prime_UTR	21569422	21569601	.	+	.	Parent=Os09t0545400-01
Chr09	irgsp1_rep	CDS	21569602	21569859	.	+	0	Parent=Os09t0545400-01
Chr09	irgsp1_rep	three_prime_UTR	21569860	21569920	.	+	.	Parent=Os09t0545400-01
Chr09	irgsp1_rep	three_prime_UTR	21570055	21570329	.	+	.	Parent=Os09t0545400-01
Chr09	irgsp1_rep	three_prime_UTR	21570414	21570887	.	+	.	Parent=Os09t0545400-01
Chr09	irgsp1_rep	mRNA	21569436	21569954	.	-	.	ID=Os09t0545500-00;Name=Os09t0545500-00;Locus_id=Os09g0545500;Note=Similar to SAUR55 - auxin-responsive SAUR family member.;Transcript_evidence=EU975305 (DDBJ);ORF_evidence=A3C156 (UniProt);InterPro=Auxin responsive SAUR protein (IPR003676);TENOR=Os09t0545500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	21569883	21569954	.	-	.	Parent=Os09t0545500-00
Chr09	irgsp1_rep	CDS	21569466	21569882	.	-	0	Parent=Os09t0545500-00
Chr09	irgsp1_rep	three_prime_UTR	21569436	21569465	.	-	.	Parent=Os09t0545500-00
Chr09	irgsp1_rep	mRNA	21574701	21575639	.	+	.	ID=Os09t0545550-00;Name=Os09t0545550-00;Locus_id=Os09g0545550;Note=Hypothetical gene.;Transcript_evidence=EU943103 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0545550-00;KEGG=Os09t0545550-00
Chr09	irgsp1_rep	CDS	21574701	21575429	.	+	0	Parent=Os09t0545550-00
Chr09	irgsp1_rep	three_prime_UTR	21575430	21575639	.	+	.	Parent=Os09t0545550-00
Chr09	irgsp1_rep	mRNA	21577257	21578039	.	-	.	ID=Os09t0545650-00;Name=Os09t0545650-00;Locus_id=Os09g0545650;Note=Hypothetical protein.;Transcript_evidence=FP098421 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0545650-00
Chr09	irgsp1_rep	five_prime_UTR	21577911	21578039	.	-	.	Parent=Os09t0545650-00
Chr09	irgsp1_rep	CDS	21577566	21577910	.	-	0	Parent=Os09t0545650-00
Chr09	irgsp1_rep	three_prime_UTR	21577257	21577565	.	-	.	Parent=Os09t0545650-00
Chr09	irgsp1_rep	mRNA	21577454	21578039	.	+	.	ID=Os09t0545700-01;Name=Os09t0545700-01;Locus_id=Os09g0545700;CGSNL Gene Symbol=SAUR41;CGSNL Gene Name=SMALL AUXIN-UP RNA 41;Oryzabase Gene Symbol Synonym(s)=OsSAUR41;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 41;Note=Similar to Auxin induced protein.;Transcript_evidence=AK062898 (DDBJ%2C Best hit);ORF_evidence=Q10MY1 (UniProt);InterPro=Auxin responsive SAUR protein (IPR003676);NIAS_FLcDNA=001-108-E11;Oryzabase=9166;Expression=AK062898;TENOR=Os09t0545700-01;KEGG=Os09t0545700-01
Chr09	irgsp1_rep	five_prime_UTR	21577454	21577542	.	+	.	Parent=Os09t0545700-01
Chr09	irgsp1_rep	CDS	21577543	21577968	.	+	0	Parent=Os09t0545700-01
Chr09	irgsp1_rep	three_prime_UTR	21577969	21578039	.	+	.	Parent=Os09t0545700-01
Chr09	irgsp1_rep	mRNA	21578237	21581293	.	+	.	ID=Os09t0545801-00;Name=Os09t0545801-00;Locus_id=Os09g0545801;Note=Non-protein coding transcript.;Transcript_evidence=CT835855 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os09t0545801-00
Chr09	irgsp1_rep	exon	21578237	21578433	.	+	.	Parent=Os09t0545801-00
Chr09	irgsp1_rep	exon	21578661	21578736	.	+	.	Parent=Os09t0545801-00
Chr09	irgsp1_rep	exon	21580987	21581293	.	+	.	Parent=Os09t0545801-00
Chr09	irgsp1_rep	mRNA	21579670	21580303	.	-	.	ID=Os09t0545901-00;Name=Os09t0545901-00;Locus_id=Os09g0545901;Note=Non-protein coding transcript.;Transcript_evidence=FP098421 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0545901-00
Chr09	irgsp1_rep	exon	21579670	21580303	.	-	.	Parent=Os09t0545901-00
Chr09	irgsp1_rep	mRNA	21581994	21582988	.	-	.	ID=Os09t0545999-00;Name=Os09t0545999-00;Locus_id=Os09g0545999;Note=Hypothetical protein.;Transcript_evidence=FP098421 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0545999-00
Chr09	irgsp1_rep	five_prime_UTR	21582852	21582988	.	-	.	Parent=Os09t0545999-00
Chr09	irgsp1_rep	CDS	21582540	21582851	.	-	0	Parent=Os09t0545999-00
Chr09	irgsp1_rep	three_prime_UTR	21581994	21582539	.	-	.	Parent=Os09t0545999-00
Chr09	irgsp1_rep	mRNA	21586113	21586782	.	+	.	ID=Os09t0546100-01;Name=Os09t0546100-01;Locus_id=Os09g0546100;RAP-DB Gene Symbol Synonym(s)=OsSAUR45%2C SAUR45;RAP-DB Gene Name Synonym(s)=SMALL AUXIN-UP RNA 45%2C Small auxin-up RNA 45;CGSNL Gene Symbol=SAUR45;CGSNL Gene Name=SMALL AUXIN-UP RNA 45;Oryzabase Gene Symbol Synonym(s)=OsSAUR45;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 45;Note=Small auxin-up RNA (SAUR)%2C Auxin-responsive SAUR gene family member%2C Auxin synthesis and transport%2C Plant growth;Transcript_evidence=AK240906;ORF_evidence=Q651Q9;GO=Biological Process: response to auxin (GO:0009733);InterPro=Small auxin-up RNA (IPR003676);NIAS_FLcDNA=J065036L02;Manual Curation=April 21%2C 2017;Literature_PMID=28321650;Oryzabase=9170;TENOR=Os09t0546100-01;KEGG=Os09t0546100-01;Subcellular location=cytoplasm (GO:0005737)
Chr09	irgsp1_rep	five_prime_UTR	21586113	21586204	.	+	.	Parent=Os09t0546100-01
Chr09	irgsp1_rep	CDS	21586205	21586630	.	+	0	Parent=Os09t0546100-01
Chr09	irgsp1_rep	three_prime_UTR	21586631	21586782	.	+	.	Parent=Os09t0546100-01
Chr09	irgsp1_rep	mRNA	21590387	21591060	.	+	.	ID=Os09t0546200-00;Name=Os09t0546200-00;Locus_id=Os09g0546200;CGSNL Gene Symbol=SAUR46;CGSNL Gene Name=SMALL AUXIN-UP RNA 46;Oryzabase Gene Symbol Synonym(s)=OsSAUR46;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 46;Note=Similar to auxin induced protein.;Transcript_evidence=CT837633 (DDBJ%2C Best hit);ORF_evidence=NP_001105462.1 (RefSeq);InterPro=Auxin responsive SAUR protein (IPR003676);Oryzabase=9171;TENOR=Os09t0546200-00;KEGG=Os09t0546200-00
Chr09	irgsp1_rep	five_prime_UTR	21590387	21590477	.	+	.	Parent=Os09t0546200-00
Chr09	irgsp1_rep	CDS	21590478	21590900	.	+	0	Parent=Os09t0546200-00
Chr09	irgsp1_rep	three_prime_UTR	21590901	21591060	.	+	.	Parent=Os09t0546200-00
Chr09	irgsp1_rep	mRNA	21595567	21597946	.	-	.	ID=Os09t0546400-01;Name=Os09t0546400-01;Locus_id=Os09g0546400;Note=Similar to Auxin induced protein.;Transcript_evidence=AK072378 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023073C20;Expression=AK072378;TENOR=Os09t0546400-01;KEGG=Os09t0546400-01
Chr09	irgsp1_rep	five_prime_UTR	21596560	21597946	.	-	.	Parent=Os09t0546400-01
Chr09	irgsp1_rep	CDS	21596511	21596559	.	-	0	Parent=Os09t0546400-01
Chr09	irgsp1_rep	CDS	21596281	21596416	.	-	2	Parent=Os09t0546400-01
Chr09	irgsp1_rep	CDS	21596092	21596182	.	-	1	Parent=Os09t0546400-01
Chr09	irgsp1_rep	three_prime_UTR	21595567	21596091	.	-	.	Parent=Os09t0546400-01
Chr09	irgsp1_rep	mRNA	21599713	21600187	.	+	.	ID=Os09t0546700-00;Name=Os09t0546700-00;Locus_id=Os09g0546700;CGSNL Gene Symbol=SAUR51;CGSNL Gene Name=SMALL AUXIN-UP RNA 51;Oryzabase Gene Symbol Synonym(s)=OsSAUR51;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 51;Note=Similar to SAUR55 - auxin-responsive SAUR family member.;Transcript_evidence=EU975305 (DDBJ);ORF_evidence=B6TXI9 (UniProt);InterPro=Auxin responsive SAUR protein (IPR003676);Oryzabase=9176;TENOR=Os09t0546700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	21599713	21599752	.	+	.	Parent=Os09t0546700-00
Chr09	irgsp1_rep	CDS	21599753	21600187	.	+	0	Parent=Os09t0546700-00
Chr09	irgsp1_rep	mRNA	21602929	21603542	.	-	.	ID=Os09t0546900-01;Name=Os09t0546900-01;Locus_id=Os09g0546900;CGSNL Gene Symbol=SAUR53;CGSNL Gene Name=SMALL AUXIN-UP RNA 53;Oryzabase Gene Symbol Synonym(s)=OsSAUR53;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 53;Note=Similar to Auxin induced protein.;Transcript_evidence=AK062365 (DDBJ%2C Best hit);ORF_evidence=A2Z3Q4 (UniProt);InterPro=Auxin responsive SAUR protein (IPR003676);NIAS_FLcDNA=001-101-H09;Oryzabase=9178;Expression=AK062365;TENOR=Os09t0546900-01;KEGG=Os09t0546900-01
Chr09	irgsp1_rep	five_prime_UTR	21603462	21603542	.	-	.	Parent=Os09t0546900-01
Chr09	irgsp1_rep	CDS	21603027	21603461	.	-	0	Parent=Os09t0546900-01
Chr09	irgsp1_rep	three_prime_UTR	21602929	21603026	.	-	.	Parent=Os09t0546900-01
Chr09	irgsp1_rep	mRNA	21604427	21605415	.	+	.	ID=Os09t0546950-00;Name=Os09t0546950-00;Locus_id=Os09g0546950;Note=Non-protein coding transcript.;Transcript_evidence=FP098421 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0546950-00
Chr09	irgsp1_rep	exon	21604427	21605415	.	+	.	Parent=Os09t0546950-00
Chr09	irgsp1_rep	mRNA	21604588	21605172	.	-	.	ID=Os09t0547000-01;Name=Os09t0547000-01;Locus_id=Os09g0547000;CGSNL Gene Symbol=SAUR54;CGSNL Gene Name=SMALL AUXIN-UP RNA 54;Oryzabase Gene Symbol Synonym(s)=OsSAUR54;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 54;Note=Similar to Auxin induced protein.;Transcript_evidence=AK062728 (DDBJ%2C Best hit);ORF_evidence=GeneMark;InterPro=Auxin responsive SAUR protein (IPR003676);NIAS_FLcDNA=001-106-E02;Oryzabase=9179;Expression=AK062728;TENOR=Os09t0547000-01;KEGG=Os09t0547000-01
Chr09	irgsp1_rep	five_prime_UTR	21605089	21605172	.	-	.	Parent=Os09t0547000-01
Chr09	irgsp1_rep	CDS	21604663	21605088	.	-	0	Parent=Os09t0547000-01
Chr09	irgsp1_rep	three_prime_UTR	21604588	21604662	.	-	.	Parent=Os09t0547000-01
Chr09	irgsp1_rep	mRNA	21606523	21607126	.	-	.	ID=Os09t0547033-01;Name=Os09t0547033-01;Locus_id=Os09g0547033;Note=Similar to SAUR44 - auxin-responsive SAUR family member.;Transcript_evidence=AK287456 (DDBJ%2C Best hit);ORF_evidence=NP_001149574.1 (RefSeq);InterPro=Auxin responsive SAUR protein (IPR003676);NIAS_FLcDNA=J043019K05;TENOR=Os09t0547033-01;KEGG=Os09t0547033-01
Chr09	irgsp1_rep	five_prime_UTR	21607024	21607126	.	-	.	Parent=Os09t0547033-01
Chr09	irgsp1_rep	CDS	21606607	21607023	.	-	0	Parent=Os09t0547033-01
Chr09	irgsp1_rep	three_prime_UTR	21606523	21606606	.	-	.	Parent=Os09t0547033-01
Chr09	irgsp1_rep	mRNA	21606625	21607286	.	+	.	ID=Os09t0547067-00;Name=Os09t0547067-00;Locus_id=Os09g0547067;Note=Conserved hypothetical protein.;Transcript_evidence=FP098421 (DDBJ);ORF_evidence=A3C166 (UniProt);TENOR=Os09t0547067-00
Chr09	irgsp1_rep	five_prime_UTR	21606625	21606799	.	+	.	Parent=Os09t0547067-00
Chr09	irgsp1_rep	CDS	21606800	21607000	.	+	0	Parent=Os09t0547067-00
Chr09	irgsp1_rep	three_prime_UTR	21607001	21607286	.	+	.	Parent=Os09t0547067-00
Chr09	irgsp1_rep	mRNA	21609271	21609952	.	+	.	ID=Os09t0547100-01;Name=Os09t0547100-01;Locus_id=Os09g0547100;CGSNL Gene Symbol=SAUR55;CGSNL Gene Name=SMALL AUXIN-UP RNA 55;Oryzabase Gene Symbol Synonym(s)=OsSAUR55;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 55;Note=Similar to Auxin induced protein.;Transcript_evidence=AK058556 (DDBJ%2C Best hit);ORF_evidence=NP_001105462.1 (RefSeq);InterPro=Auxin responsive SAUR protein (IPR003676);NIAS_FLcDNA=001-017-D04;Oryzabase=9180;Expression=AK058556;TENOR=Os09t0547100-01;KEGG=Os09t0547100-01
Chr09	irgsp1_rep	five_prime_UTR	21609271	21609365	.	+	.	Parent=Os09t0547100-01
Chr09	irgsp1_rep	CDS	21609366	21609818	.	+	0	Parent=Os09t0547100-01
Chr09	irgsp1_rep	three_prime_UTR	21609819	21609952	.	+	.	Parent=Os09t0547100-01
Chr09	irgsp1_rep	mRNA	21610093	21613089	.	-	.	ID=Os09t0547200-01;Name=Os09t0547200-01;Locus_id=Os09g0547200;Note=Protein of unknown function DUF292%2C eukaryotic domain containing protein.;Transcript_evidence=AK073078 (DDBJ%2C Best hit);ORF_evidence=B8BE42 (UniProt);InterPro=Domain of unknown function DUF292%2C eukaryotic (IPR005061);NIAS_FLcDNA=J033016L03;TENOR=Os09t0547200-01
Chr09	irgsp1_rep	five_prime_UTR	21612972	21613089	.	-	.	Parent=Os09t0547200-01
Chr09	irgsp1_rep	CDS	21612865	21612971	.	-	0	Parent=Os09t0547200-01
Chr09	irgsp1_rep	CDS	21612647	21612779	.	-	1	Parent=Os09t0547200-01
Chr09	irgsp1_rep	CDS	21611838	21611941	.	-	0	Parent=Os09t0547200-01
Chr09	irgsp1_rep	CDS	21611570	21611741	.	-	1	Parent=Os09t0547200-01
Chr09	irgsp1_rep	CDS	21611337	21611477	.	-	0	Parent=Os09t0547200-01
Chr09	irgsp1_rep	CDS	21611161	21611255	.	-	0	Parent=Os09t0547200-01
Chr09	irgsp1_rep	CDS	21610386	21611064	.	-	1	Parent=Os09t0547200-01
Chr09	irgsp1_rep	three_prime_UTR	21610093	21610385	.	-	.	Parent=Os09t0547200-01
Chr09	irgsp1_rep	mRNA	21610093	21613061	.	-	.	ID=Os09t0547200-02;Name=Os09t0547200-02;Locus_id=Os09g0547200;Note=Protein of unknown function DUF292%2C eukaryotic domain containing protein.;Transcript_evidence=AK104984 (DDBJ%2C Best hit);ORF_evidence=B8BE42 (UniProt);InterPro=Domain of unknown function DUF292%2C eukaryotic (IPR005061);NIAS_FLcDNA=002-104-D03;TENOR=Os09t0547200-02
Chr09	irgsp1_rep	five_prime_UTR	21612972	21613061	.	-	.	Parent=Os09t0547200-02
Chr09	irgsp1_rep	CDS	21612865	21612971	.	-	0	Parent=Os09t0547200-02
Chr09	irgsp1_rep	CDS	21612647	21612779	.	-	1	Parent=Os09t0547200-02
Chr09	irgsp1_rep	CDS	21611838	21611941	.	-	0	Parent=Os09t0547200-02
Chr09	irgsp1_rep	CDS	21611570	21611741	.	-	1	Parent=Os09t0547200-02
Chr09	irgsp1_rep	CDS	21611337	21611477	.	-	0	Parent=Os09t0547200-02
Chr09	irgsp1_rep	CDS	21611161	21611255	.	-	0	Parent=Os09t0547200-02
Chr09	irgsp1_rep	CDS	21610386	21611064	.	-	1	Parent=Os09t0547200-02
Chr09	irgsp1_rep	three_prime_UTR	21610093	21610385	.	-	.	Parent=Os09t0547200-02
Chr09	irgsp1_rep	mRNA	21630870	21636726	.	+	.	ID=Os09t0547300-01;Name=Os09t0547300-01;Locus_id=Os09g0547300;Note=Protein of unknown function DUF632 domain containing protein.;Transcript_evidence=AK100643 (DDBJ%2C Best hit);ORF_evidence=Q651Q0 (UniProt);InterPro=Domain of unknown function DUF632 (IPR006867),Domain of unknown function DUF630 (IPR006868);NIAS_FLcDNA=J023110J21;Expression=AK100643;TENOR=Os09t0547300-01;KEGG=Os09t0547300-01
Chr09	irgsp1_rep	five_prime_UTR	21630870	21631275	.	+	.	Parent=Os09t0547300-01
Chr09	irgsp1_rep	CDS	21631276	21632905	.	+	0	Parent=Os09t0547300-01
Chr09	irgsp1_rep	CDS	21632988	21633133	.	+	2	Parent=Os09t0547300-01
Chr09	irgsp1_rep	CDS	21633726	21633949	.	+	0	Parent=Os09t0547300-01
Chr09	irgsp1_rep	CDS	21635082	21635841	.	+	1	Parent=Os09t0547300-01
Chr09	irgsp1_rep	three_prime_UTR	21635842	21636726	.	+	.	Parent=Os09t0547300-01
Chr09	irgsp1_rep	mRNA	21631979	21636663	.	+	.	ID=Os09t0547300-02;Name=Os09t0547300-02;Locus_id=Os09g0547300;Note=Domain of unknown function DUF632 domain containing protein.;Transcript_evidence=AK102669 (DDBJ%2C Best hit);ORF_evidence=Q651Q0 (UniProt);InterPro=Domain of unknown function DUF632 (IPR006867);NIAS_FLcDNA=J033101O18;TENOR=Os09t0547300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	21631979	21631989	.	+	.	Parent=Os09t0547300-02
Chr09	irgsp1_rep	CDS	21631990	21632905	.	+	0	Parent=Os09t0547300-02
Chr09	irgsp1_rep	CDS	21632988	21633133	.	+	2	Parent=Os09t0547300-02
Chr09	irgsp1_rep	CDS	21633726	21633949	.	+	0	Parent=Os09t0547300-02
Chr09	irgsp1_rep	CDS	21635082	21635841	.	+	1	Parent=Os09t0547300-02
Chr09	irgsp1_rep	three_prime_UTR	21635842	21636663	.	+	.	Parent=Os09t0547300-02
Chr09	irgsp1_rep	mRNA	21642728	21644729	.	+	.	ID=Os09t0547500-01;Name=Os09t0547500-01;Locus_id=Os09g0547500;RAP-DB Gene Symbol Synonym(s)=LOGL9;RAP-DB Gene Name Synonym(s)=LONELY GUY LIKE PHOSPHORIBOHYDROLASE 9%2C LOG LIKE phosphoribohydrolase 9%2C LOG LIKE 9%2C OsLDC-like 1%2C lysine decarboxylase-like 1;CGSNL Gene Symbol=LOGL9;CGSNL Gene Name=LONELY GUY LIKE PHOSPHORIBOHYDROLASE 9;Oryzabase Gene Symbol Synonym(s)=LOGL9;Oryzabase Gene Name Synonym(s)=LOG LIKE phosphoribohydrolase 9%2C LOG LIKE 9%2C OsLDC-like 1%2C lysine decarboxylase-like 1;Note=Lysine decarboxylase-like protein%2C Response to abiotic stresses;Transcript_evidence=AK062595;ORF_evidence=B7E7M8;InterPro=LOG family (IPR031100),Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG (IPR005269);NIAS_FLcDNA=001-101-C01;Manual Curation=February 23%2C 2017;Literature_PMID=22965749;Oryzabase=9854;Expression=AK062595;TENOR=Os09t0547500-01;KEGG=Os09t0547500-01
Chr09	irgsp1_rep	CDS	21642728	21642949	.	+	0	Parent=Os09t0547500-01
Chr09	irgsp1_rep	CDS	21643083	21643180	.	+	0	Parent=Os09t0547500-01
Chr09	irgsp1_rep	CDS	21643301	21643331	.	+	1	Parent=Os09t0547500-01
Chr09	irgsp1_rep	CDS	21643439	21643753	.	+	0	Parent=Os09t0547500-01
Chr09	irgsp1_rep	CDS	21644332	21644349	.	+	0	Parent=Os09t0547500-01
Chr09	irgsp1_rep	three_prime_UTR	21644350	21644729	.	+	.	Parent=Os09t0547500-01
Chr09	irgsp1_rep	mRNA	21653048	21655333	.	+	.	ID=Os09t0547800-01;Name=Os09t0547800-01;Locus_id=Os09g0547800;Oryzabase Gene Symbol Synonym(s)=OsFbox501%2C Os_F0050;Oryzabase Gene Name Synonym(s)=F-box protein 501;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK073122 (DDBJ%2C Best hit);ORF_evidence=Q651P7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033003A15;Oryzabase=17271;Expression=AK073122;TENOR=Os09t0547800-01;KEGG=Os09t0547800-01
Chr09	irgsp1_rep	five_prime_UTR	21653048	21653258	.	+	.	Parent=Os09t0547800-01
Chr09	irgsp1_rep	CDS	21653259	21654086	.	+	0	Parent=Os09t0547800-01
Chr09	irgsp1_rep	CDS	21654214	21654369	.	+	0	Parent=Os09t0547800-01
Chr09	irgsp1_rep	CDS	21654818	21655042	.	+	0	Parent=Os09t0547800-01
Chr09	irgsp1_rep	three_prime_UTR	21655043	21655333	.	+	.	Parent=Os09t0547800-01
Chr09	irgsp1_rep	mRNA	21656212	21664428	.	+	.	ID=Os09t0547900-00;Name=Os09t0547900-00;Locus_id=Os09g0547900;CGSNL Gene Symbol=UBP14-1;CGSNL Gene Name=UBIQUITIN-SPECIFIC PROCESSING PROTEASE 14-1;Oryzabase Gene Symbol Synonym(s)=OsUBP14-1;Oryzabase Gene Name Synonym(s)=ubiquitin-specific processing protease 14-1;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A3C178 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Domain of unknown function DUF629 (IPR006865),Tetratricopeptide-like helical (IPR011990);Oryzabase=22897;TENOR=Os09t0547900-00;KEGG=Os09t0547900-00
Chr09	irgsp1_rep	CDS	21656212	21657747	.	+	0	Parent=Os09t0547900-00
Chr09	irgsp1_rep	CDS	21658042	21658902	.	+	0	Parent=Os09t0547900-00
Chr09	irgsp1_rep	CDS	21658979	21659025	.	+	0	Parent=Os09t0547900-00
Chr09	irgsp1_rep	CDS	21659984	21660090	.	+	1	Parent=Os09t0547900-00
Chr09	irgsp1_rep	CDS	21660905	21660998	.	+	2	Parent=Os09t0547900-00
Chr09	irgsp1_rep	CDS	21662191	21662345	.	+	1	Parent=Os09t0547900-00
Chr09	irgsp1_rep	CDS	21662649	21662806	.	+	2	Parent=Os09t0547900-00
Chr09	irgsp1_rep	CDS	21663063	21663110	.	+	0	Parent=Os09t0547900-00
Chr09	irgsp1_rep	CDS	21663957	21664040	.	+	0	Parent=Os09t0547900-00
Chr09	irgsp1_rep	CDS	21664342	21664428	.	+	0	Parent=Os09t0547900-00
Chr09	irgsp1_rep	mRNA	21668665	21669593	.	+	.	ID=Os09t0548066-00;Name=Os09t0548066-00;Locus_id=Os09g0548066;Oryzabase Gene Symbol Synonym(s)=OsFbox502%2C Os_F0060;Oryzabase Gene Name Synonym(s)=F-box protein 502;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001175968.1 (RefSeq);Oryzabase=17272;TENOR=Os09t0548066-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	21668665	21668669	.	+	0	Parent=Os09t0548066-00
Chr09	irgsp1_rep	CDS	21668800	21668971	.	+	1	Parent=Os09t0548066-00
Chr09	irgsp1_rep	CDS	21669108	21669263	.	+	0	Parent=Os09t0548066-00
Chr09	irgsp1_rep	CDS	21669399	21669593	.	+	0	Parent=Os09t0548066-00
Chr09	irgsp1_rep	mRNA	21671670	21673656	.	-	.	ID=Os09t0548083-00;Name=Os09t0548083-00;Locus_id=Os09g0548083;Note=Non-protein coding transcript.;Transcript_evidence=tplb0058a02 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os09t0548083-00
Chr09	irgsp1_rep	exon	21673438	21673656	.	-	.	Parent=Os09t0548083-00
Chr09	irgsp1_rep	exon	21673032	21673356	.	-	.	Parent=Os09t0548083-00
Chr09	irgsp1_rep	exon	21672866	21672952	.	-	.	Parent=Os09t0548083-00
Chr09	irgsp1_rep	exon	21672364	21672536	.	-	.	Parent=Os09t0548083-00
Chr09	irgsp1_rep	exon	21671895	21672064	.	-	.	Parent=Os09t0548083-00
Chr09	irgsp1_rep	exon	21671670	21671778	.	-	.	Parent=Os09t0548083-00
Chr09	irgsp1_rep	mRNA	21673765	21674236	.	+	.	ID=Os09t0548100-01;Name=Os09t0548100-01;Locus_id=Os09g0548100;Oryzabase Gene Symbol Synonym(s)=OsFbox502%2C Os_F0060;Oryzabase Gene Name Synonym(s)=F-box protein 502;Note=Conserved hypothetical protein.;Transcript_evidence=AK062925 (DDBJ%2C Best hit);ORF_evidence=Q651P4 (UniProt);NIAS_FLcDNA=001-109-A01;Oryzabase=17272;Expression=AK062925;TENOR=Os09t0548100-01;KEGG=Os09t0548100-01
Chr09	irgsp1_rep	five_prime_UTR	21673765	21673765	.	+	.	Parent=Os09t0548100-01
Chr09	irgsp1_rep	CDS	21673766	21673897	.	+	0	Parent=Os09t0548100-01
Chr09	irgsp1_rep	three_prime_UTR	21673898	21674236	.	+	.	Parent=Os09t0548100-01
Chr09	irgsp1_rep	mRNA	21677478	21680257	.	+	.	ID=Os09t0548200-01;Name=Os09t0548200-01;Locus_id=Os09g0548200;Oryzabase Gene Symbol Synonym(s)=LYP3%2C Os-LYP3;Oryzabase Gene Name Synonym(s)=lysin motif-containing protein 3;Note=Peptidoglycan-binding Lysin subgroup domain containing protein.;Transcript_evidence=AK060664 (DDBJ%2C Best hit);ORF_evidence=Q651P3 (UniProt);GO=Biological Process: cell wall macromolecule catabolic process (GO:0016998);InterPro=Peptidoglycan-binding Lysin subgroup (IPR002482),Peptidoglycan-binding lysin domain (IPR018392);NIAS_FLcDNA=001-028-B10;Oryzabase=11161;Expression=AK060664;TENOR=Os09t0548200-01;KEGG=Os09t0548200-01
Chr09	irgsp1_rep	five_prime_UTR	21677478	21677526	.	+	.	Parent=Os09t0548200-01
Chr09	irgsp1_rep	CDS	21677527	21678199	.	+	0	Parent=Os09t0548200-01
Chr09	irgsp1_rep	CDS	21679377	21679494	.	+	2	Parent=Os09t0548200-01
Chr09	irgsp1_rep	CDS	21679607	21679800	.	+	1	Parent=Os09t0548200-01
Chr09	irgsp1_rep	CDS	21679900	21680036	.	+	2	Parent=Os09t0548200-01
Chr09	irgsp1_rep	three_prime_UTR	21680037	21680257	.	+	.	Parent=Os09t0548200-01
Chr09	irgsp1_rep	mRNA	21681127	21687492	.	+	.	ID=Os09t0548300-01;Name=Os09t0548300-01;Locus_id=Os09g0548300;Note=Similar to predicted protein.;Transcript_evidence=AK241432 (DDBJ%2C Best hit);ORF_evidence=NP_195551.5 (RefSeq);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);NIAS_FLcDNA=J065162B02;TENOR=Os09t0548300-01;KEGG=Os09t0548300-01
Chr09	irgsp1_rep	five_prime_UTR	21681127	21681410	.	+	.	Parent=Os09t0548300-01
Chr09	irgsp1_rep	CDS	21681411	21681739	.	+	0	Parent=Os09t0548300-01
Chr09	irgsp1_rep	CDS	21681861	21681988	.	+	1	Parent=Os09t0548300-01
Chr09	irgsp1_rep	CDS	21682103	21682246	.	+	2	Parent=Os09t0548300-01
Chr09	irgsp1_rep	CDS	21682331	21682479	.	+	2	Parent=Os09t0548300-01
Chr09	irgsp1_rep	CDS	21682619	21682754	.	+	0	Parent=Os09t0548300-01
Chr09	irgsp1_rep	CDS	21682976	21683072	.	+	2	Parent=Os09t0548300-01
Chr09	irgsp1_rep	CDS	21683449	21683549	.	+	1	Parent=Os09t0548300-01
Chr09	irgsp1_rep	CDS	21683747	21683910	.	+	2	Parent=Os09t0548300-01
Chr09	irgsp1_rep	CDS	21684258	21684329	.	+	0	Parent=Os09t0548300-01
Chr09	irgsp1_rep	CDS	21684438	21684554	.	+	0	Parent=Os09t0548300-01
Chr09	irgsp1_rep	CDS	21684642	21684737	.	+	0	Parent=Os09t0548300-01
Chr09	irgsp1_rep	CDS	21684856	21684975	.	+	0	Parent=Os09t0548300-01
Chr09	irgsp1_rep	CDS	21685359	21685417	.	+	0	Parent=Os09t0548300-01
Chr09	irgsp1_rep	CDS	21685970	21685991	.	+	1	Parent=Os09t0548300-01
Chr09	irgsp1_rep	three_prime_UTR	21685992	21686042	.	+	.	Parent=Os09t0548300-01
Chr09	irgsp1_rep	three_prime_UTR	21687201	21687492	.	+	.	Parent=Os09t0548300-01
Chr09	irgsp1_rep	mRNA	21686098	21688723	.	-	.	ID=Os09t0548400-01;Name=Os09t0548400-01;Locus_id=Os09g0548400;Note=Dimethylaniline monooxygenase%2C N-oxide-forming domain containing protein.;Transcript_evidence=AK067622 (DDBJ%2C Best hit);ORF_evidence=B6U2L7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: intrinsic to endoplasmic reticulum membrane (GO:0031227),Molecular Function: flavin-containing monooxygenase activity (GO:0004499),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=Dimethylaniline monooxygenase%2C N-oxide-forming (IPR012143),Flavin monooxygenase-like (IPR020946);NIAS_FLcDNA=J013108A19;Expression=AK067622;TENOR=Os09t0548400-01;KEGG=Os09t0548400-01 (EC:1.14.13.8)
Chr09	irgsp1_rep	five_prime_UTR	21688699	21688723	.	-	.	Parent=Os09t0548400-01
Chr09	irgsp1_rep	CDS	21688252	21688698	.	-	0	Parent=Os09t0548400-01
Chr09	irgsp1_rep	CDS	21687785	21688016	.	-	0	Parent=Os09t0548400-01
Chr09	irgsp1_rep	CDS	21687525	21687700	.	-	2	Parent=Os09t0548400-01
Chr09	irgsp1_rep	CDS	21687052	21687410	.	-	0	Parent=Os09t0548400-01
Chr09	irgsp1_rep	CDS	21686364	21686709	.	-	1	Parent=Os09t0548400-01
Chr09	irgsp1_rep	three_prime_UTR	21686098	21686363	.	-	.	Parent=Os09t0548400-01
Chr09	irgsp1_rep	mRNA	21696247	21698128	.	+	.	ID=Os09t0548600-00;Name=Os09t0548600-00;Locus_id=Os09g0548600;CGSNL Gene Symbol=PUP12;CGSNL Gene Name=PURINE PERMEASE 12;Oryzabase Gene Symbol Synonym(s)=OsPUP12;Oryzabase Gene Name Synonym(s)=purine permease 12%2C PUP-type cytokinin transporter 12;Note=Similar to 001-003-F02%2C full insert sequence.;Transcript_evidence=BT085231 (DDBJ);ORF_evidence=B7E4T1 (UniProt);InterPro=Domain of unknown function DUF250 (IPR004853);Oryzabase=15012;TENOR=Os09t0548600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	21696247	21696355	.	+	.	Parent=Os09t0548600-00
Chr09	irgsp1_rep	five_prime_UTR	21697019	21697087	.	+	.	Parent=Os09t0548600-00
Chr09	irgsp1_rep	CDS	21697088	21698128	.	+	0	Parent=Os09t0548600-00
Chr09	irgsp1_rep	mRNA	21696880	21701577	.	-	.	ID=Os09t0548700-01;Name=Os09t0548700-01;Locus_id=Os09g0548700;Note=Similar to H0515C11.3 protein.;Transcript_evidence=AK287578 (DDBJ%2C Best hit);ORF_evidence=Q01MI8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: intrinsic to endoplasmic reticulum membrane (GO:0031227),Molecular Function: flavin-containing monooxygenase activity (GO:0004499),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=Dimethylaniline monooxygenase%2C N-oxide-forming (IPR012143),Flavin monooxygenase-like (IPR020946);NIAS_FLcDNA=J065038J02;TENOR=Os09t0548700-01;KEGG=Os09t0548700-01
Chr09	irgsp1_rep	five_prime_UTR	21701512	21701577	.	-	.	Parent=Os09t0548700-01
Chr09	irgsp1_rep	CDS	21701059	21701511	.	-	0	Parent=Os09t0548700-01
Chr09	irgsp1_rep	CDS	21700195	21700432	.	-	0	Parent=Os09t0548700-01
Chr09	irgsp1_rep	CDS	21699903	21700078	.	-	2	Parent=Os09t0548700-01
Chr09	irgsp1_rep	CDS	21699105	21699469	.	-	0	Parent=Os09t0548700-01
Chr09	irgsp1_rep	CDS	21698614	21698968	.	-	1	Parent=Os09t0548700-01
Chr09	irgsp1_rep	three_prime_UTR	21698581	21698613	.	-	.	Parent=Os09t0548700-01
Chr09	irgsp1_rep	three_prime_UTR	21696880	21698100	.	-	.	Parent=Os09t0548700-01
Chr09	irgsp1_rep	mRNA	21724337	21726166	.	-	.	ID=Os09t0549300-00;Name=Os09t0549300-00;Locus_id=Os09g0549300;Note=Flavin-containing monooxygenase FMO family protein.;Transcript_evidence=AK355934 (DDBJ);ORF_evidence=B6SWP3 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: intrinsic to endoplasmic reticulum membrane (GO:0031227),Molecular Function: flavin-containing monooxygenase activity (GO:0004499),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=Dimethylaniline monooxygenase%2C N-oxide-forming (IPR012143),Flavin monooxygenase-like (IPR020946);TENOR=Os09t0549300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	21726153	21726166	.	-	.	Parent=Os09t0549300-00
Chr09	irgsp1_rep	CDS	21725712	21726152	.	-	0	Parent=Os09t0549300-00
Chr09	irgsp1_rep	CDS	21725397	21725634	.	-	0	Parent=Os09t0549300-00
Chr09	irgsp1_rep	CDS	21725139	21725317	.	-	2	Parent=Os09t0549300-00
Chr09	irgsp1_rep	CDS	21724339	21725064	.	-	0	Parent=Os09t0549300-00
Chr09	irgsp1_rep	three_prime_UTR	21724337	21724338	.	-	.	Parent=Os09t0549300-00
Chr09	irgsp1_rep	mRNA	21727812	21730971	.	+	.	ID=Os09t0549400-01;Name=Os09t0549400-01;Locus_id=Os09g0549400;Note=Conserved hypothetical protein.;Transcript_evidence=AK103727 (DDBJ%2C Best hit);ORF_evidence=A2Z3S6 (UniProt);NIAS_FLcDNA=J033138D21;Expression=AK103727;TENOR=Os09t0549400-01;KEGG=Os09t0549400-01
Chr09	irgsp1_rep	five_prime_UTR	21727812	21727926	.	+	.	Parent=Os09t0549400-01
Chr09	irgsp1_rep	five_prime_UTR	21729112	21729131	.	+	.	Parent=Os09t0549400-01
Chr09	irgsp1_rep	CDS	21729132	21730206	.	+	0	Parent=Os09t0549400-01
Chr09	irgsp1_rep	CDS	21730287	21730370	.	+	2	Parent=Os09t0549400-01
Chr09	irgsp1_rep	CDS	21730529	21730647	.	+	2	Parent=Os09t0549400-01
Chr09	irgsp1_rep	three_prime_UTR	21730648	21730971	.	+	.	Parent=Os09t0549400-01
Chr09	irgsp1_rep	mRNA	21733022	21735047	.	-	.	ID=Os09t0549425-00;Name=Os09t0549425-00;Locus_id=Os09g0549425;Note=Conserved hypothetical protein.;Transcript_evidence=AK374610 (DDBJ);ORF_evidence=F2EEN4 (UniProt);TENOR=Os09t0549425-00
Chr09	irgsp1_rep	five_prime_UTR	21733544	21735047	.	-	.	Parent=Os09t0549425-00
Chr09	irgsp1_rep	CDS	21733526	21733543	.	-	0	Parent=Os09t0549425-00
Chr09	irgsp1_rep	CDS	21733222	21733365	.	-	0	Parent=Os09t0549425-00
Chr09	irgsp1_rep	three_prime_UTR	21733022	21733221	.	-	.	Parent=Os09t0549425-00
Chr09	irgsp1_rep	mRNA	21735447	21740544	.	+	.	ID=Os09t0549450-01;Name=Os09t0549450-01;Locus_id=Os09g0549450;RAP-DB Gene Symbol Synonym(s)=OsNLP4;RAP-DB Gene Name Synonym(s)=NIN-like protein 4;CGSNL Gene Symbol=NLP4;CGSNL Gene Name=NIN-LIKE PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OsNLP4%2C NLP4.1%2C NLP4.2;Oryzabase Gene Name Synonym(s)=NLP transcription factor 4%2C NODULE INCEPTION-like protein 4;Note=NLP family transcriptional factor%2C Promotion of nitrogen use efficiency (NUE)%2C Transactivation of nitrogen assimilation gene OsNiR;Transcript_evidence=AK335401 (wheat);ORF_evidence=A0A0P0XQL5;GO=Molecular Function: protein binding (GO:0005515);InterPro=RWP-RK domain (IPR003035),PB1 domain (IPR000270),Protein NLP%2C PB1 domain (IPR034891);Manual Curation=July 27%2C 2020;Literature_PMID=32710800;Oryzabase=23713;TENOR=Os09t0549450-00;KEGG=Os09t0549450-00
Chr09	irgsp1_rep	five_prime_UTR	21735447	21735585	.	+	.	Parent=Os09t0549450-01
Chr09	irgsp1_rep	five_prime_UTR	21735897	21735919	.	+	.	Parent=Os09t0549450-01
Chr09	irgsp1_rep	CDS	21735920	21736639	.	+	0	Parent=Os09t0549450-01
Chr09	irgsp1_rep	CDS	21736830	21736877	.	+	0	Parent=Os09t0549450-01
Chr09	irgsp1_rep	CDS	21737322	21738207	.	+	0	Parent=Os09t0549450-01
Chr09	irgsp1_rep	CDS	21738936	21739810	.	+	2	Parent=Os09t0549450-01
Chr09	irgsp1_rep	three_prime_UTR	21739811	21739982	.	+	.	Parent=Os09t0549450-01
Chr09	irgsp1_rep	three_prime_UTR	21740080	21740544	.	+	.	Parent=Os09t0549450-01
Chr09	irgsp1_rep	mRNA	21742555	21743600	.	-	.	ID=Os09t0549500-00;Name=Os09t0549500-00;Locus_id=Os09g0549500;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=FP096667 (DDBJ);ORF_evidence=NP_001150292.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA recognition motif domain (IPR000504),Zinc finger%2C CCHC-type (IPR001878),RNA recognition motif domain%2C eukaryote (IPR003954),Nucleotide-binding%2C alpha-beta plait (IPR012677),Zinc finger%2C CCHC retroviral-type (IPR013084);TENOR=Os09t0549500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	21742770	21743600	.	-	0	Parent=Os09t0549500-00
Chr09	irgsp1_rep	three_prime_UTR	21742555	21742769	.	-	.	Parent=Os09t0549500-00
Chr09	irgsp1_rep	mRNA	21744755	21745868	.	+	.	ID=Os09t0549600-00;Name=Os09t0549600-00;Locus_id=Os09g0549600;CGSNL Gene Symbol=HMP41;CGSNL Gene Name=HEAVY METAL-ASSOCIATED PROTEIN 41;Oryzabase Gene Symbol Synonym(s)=OsHMP41;Oryzabase Gene Name Synonym(s)=Heavy metal-associated protein 41;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001063860.1 (RefSeq);Oryzabase=23556;TENOR=Os09t0549600-00
Chr09	irgsp1_rep	CDS	21744755	21744763	.	+	0	Parent=Os09t0549600-00
Chr09	irgsp1_rep	CDS	21744855	21744957	.	+	0	Parent=Os09t0549600-00
Chr09	irgsp1_rep	CDS	21745061	21745212	.	+	2	Parent=Os09t0549600-00
Chr09	irgsp1_rep	CDS	21745506	21745868	.	+	0	Parent=Os09t0549600-00
Chr09	irgsp1_rep	mRNA	21745879	21746804	.	-	.	ID=Os09t0549700-01;Name=Os09t0549700-01;Locus_id=Os09g0549700;Note=Similar to 50S ribosomal protein-related.;Transcript_evidence=AK241378 (DDBJ%2C Best hit);ORF_evidence=NP_190088.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L18/L5 (IPR005484);NIAS_FLcDNA=J065155H12;TENOR=Os09t0549700-01;KEGG=Os09t0549700-01
Chr09	irgsp1_rep	five_prime_UTR	21746526	21746804	.	-	.	Parent=Os09t0549700-01
Chr09	irgsp1_rep	CDS	21746157	21746525	.	-	0	Parent=Os09t0549700-01
Chr09	irgsp1_rep	three_prime_UTR	21745879	21746156	.	-	.	Parent=Os09t0549700-01
Chr09	irgsp1_rep	mRNA	21751750	21757512	.	-	.	ID=Os09t0550000-01;Name=Os09t0550000-01;Locus_id=Os09g0550000;Note=Bromodomain containing protein.;Transcript_evidence=AK067716 (DDBJ%2C Best hit),AK119235 (DDBJ%2C Best hit);ORF_evidence=B6SVE0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Bromodomain (IPR001487),Bromodomain%2C conserved site (IPR018359);NIAS_FLcDNA=J013119O19,001-116-D08;Expression=AK067716;TENOR=Os09t0550000-01;KEGG=Os09t0550000-01
Chr09	irgsp1_rep	five_prime_UTR	21757471	21757512	.	-	.	Parent=Os09t0550000-01
Chr09	irgsp1_rep	CDS	21757192	21757470	.	-	0	Parent=Os09t0550000-01
Chr09	irgsp1_rep	CDS	21756553	21756589	.	-	0	Parent=Os09t0550000-01
Chr09	irgsp1_rep	CDS	21756272	21756347	.	-	2	Parent=Os09t0550000-01
Chr09	irgsp1_rep	CDS	21756130	21756175	.	-	1	Parent=Os09t0550000-01
Chr09	irgsp1_rep	CDS	21755932	21756030	.	-	0	Parent=Os09t0550000-01
Chr09	irgsp1_rep	CDS	21753854	21753922	.	-	0	Parent=Os09t0550000-01
Chr09	irgsp1_rep	CDS	21753385	21753769	.	-	0	Parent=Os09t0550000-01
Chr09	irgsp1_rep	CDS	21753101	21753255	.	-	2	Parent=Os09t0550000-01
Chr09	irgsp1_rep	CDS	21752477	21752966	.	-	0	Parent=Os09t0550000-01
Chr09	irgsp1_rep	CDS	21752290	21752357	.	-	2	Parent=Os09t0550000-01
Chr09	irgsp1_rep	three_prime_UTR	21751750	21752289	.	-	.	Parent=Os09t0550000-01
Chr09	irgsp1_rep	mRNA	21759660	21760115	.	-	.	ID=Os09t0550150-00;Name=Os09t0550150-00;Locus_id=Os09g0550150;Note=Conserved hypothetical protein.;Transcript_evidence=FP096365 (DDBJ);ORF_evidence=Q69MN3 (UniProt);TENOR=Os09t0550150-00
Chr09	irgsp1_rep	five_prime_UTR	21760086	21760115	.	-	.	Parent=Os09t0550150-00
Chr09	irgsp1_rep	CDS	21759660	21760085	.	-	0	Parent=Os09t0550150-00
Chr09	irgsp1_rep	mRNA	21761758	21765360	.	-	.	ID=Os09t0550300-00;Name=Os09t0550300-00;Locus_id=Os09g0550300;Note=S-locus glycoprotein domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G4X2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=S-locus glycoprotein (IPR000858),Serine-threonine/tyrosine-protein kinase (IPR001245),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227);TENOR=Os09t0550300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	21764010	21765360	.	-	0	Parent=Os09t0550300-00
Chr09	irgsp1_rep	CDS	21763478	21763579	.	-	2	Parent=Os09t0550300-00
Chr09	irgsp1_rep	CDS	21763169	21763368	.	-	2	Parent=Os09t0550300-00
Chr09	irgsp1_rep	CDS	21762174	21762341	.	-	0	Parent=Os09t0550300-00
Chr09	irgsp1_rep	CDS	21761758	21762072	.	-	0	Parent=Os09t0550300-00
Chr09	irgsp1_rep	mRNA	21771201	21774316	.	+	.	ID=Os09t0550400-00;Name=Os09t0550400-00;Locus_id=Os09g0550400;Note=Hypothetical protein.;Transcript_evidence=tplb0036c01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0550400-00
Chr09	irgsp1_rep	five_prime_UTR	21771201	21771501	.	+	.	Parent=Os09t0550400-00
Chr09	irgsp1_rep	five_prime_UTR	21771605	21771762	.	+	.	Parent=Os09t0550400-00
Chr09	irgsp1_rep	five_prime_UTR	21771846	21772067	.	+	.	Parent=Os09t0550400-00
Chr09	irgsp1_rep	five_prime_UTR	21772152	21772377	.	+	.	Parent=Os09t0550400-00
Chr09	irgsp1_rep	five_prime_UTR	21772493	21772711	.	+	.	Parent=Os09t0550400-00
Chr09	irgsp1_rep	CDS	21772712	21772835	.	+	0	Parent=Os09t0550400-00
Chr09	irgsp1_rep	CDS	21773053	21773915	.	+	2	Parent=Os09t0550400-00
Chr09	irgsp1_rep	three_prime_UTR	21773916	21774316	.	+	.	Parent=Os09t0550400-00
Chr09	irgsp1_rep	mRNA	21772748	21778020	.	-	.	ID=Os09t0550500-01;Name=Os09t0550500-01;Locus_id=Os09g0550500;Note=S-locus glycoprotein domain containing protein.;Transcript_evidence=AK109692 (DDBJ%2C Best hit);ORF_evidence=B8BE63 (UniProt);GO=Biological Process: recognition of pollen (GO:0048544),Molecular Function: sugar binding (GO:0005529);InterPro=S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),PAN-2 domain (IPR013227);NIAS_FLcDNA=002-145-E07;TENOR=Os09t0550500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	21777916	21778020	.	-	.	Parent=Os09t0550500-01
Chr09	irgsp1_rep	CDS	21777816	21777915	.	-	0	Parent=Os09t0550500-01
Chr09	irgsp1_rep	CDS	21773015	21774325	.	-	2	Parent=Os09t0550500-01
Chr09	irgsp1_rep	CDS	21772774	21772901	.	-	2	Parent=Os09t0550500-01
Chr09	irgsp1_rep	three_prime_UTR	21772748	21772773	.	-	.	Parent=Os09t0550500-01
Chr09	irgsp1_rep	mRNA	21775405	21778325	.	-	.	ID=Os09t0550500-02;Name=Os09t0550500-02;Locus_id=Os09g0550500;Note=Conserved hypothetical protein.;Transcript_evidence=AK069363 (DDBJ%2C Best hit);ORF_evidence=Q7XX78 (UniProt);NIAS_FLcDNA=J023012G16;TENOR=Os09t0550500-02
Chr09	irgsp1_rep	five_prime_UTR	21777816	21778325	.	-	.	Parent=Os09t0550500-02
Chr09	irgsp1_rep	five_prime_UTR	21775762	21776696	.	-	.	Parent=Os09t0550500-02
Chr09	irgsp1_rep	CDS	21775534	21775761	.	-	0	Parent=Os09t0550500-02
Chr09	irgsp1_rep	three_prime_UTR	21775405	21775533	.	-	.	Parent=Os09t0550500-02
Chr09	irgsp1_rep	mRNA	21779201	21782486	.	-	.	ID=Os09t0550600-00;Name=Os09t0550600-00;Locus_id=Os09g0550600;CGSNL Gene Symbol=RLCK279;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 279;Oryzabase Gene Symbol Synonym(s)=OsRLCK279;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 279;Note=Similar to S-locus receptor-like kinase RLK14.;Transcript_evidence=AK374103 (DDBJ);ORF_evidence=Q8LLI4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Apple-like (IPR003609),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18964;TENOR=Os09t0550600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	21781157	21782486	.	-	0	Parent=Os09t0550600-00
Chr09	irgsp1_rep	CDS	21780846	21780938	.	-	2	Parent=Os09t0550600-00
Chr09	irgsp1_rep	CDS	21780555	21780754	.	-	2	Parent=Os09t0550600-00
Chr09	irgsp1_rep	CDS	21780179	21780389	.	-	0	Parent=Os09t0550600-00
Chr09	irgsp1_rep	CDS	21779852	21780089	.	-	2	Parent=Os09t0550600-00
Chr09	irgsp1_rep	CDS	21779609	21779759	.	-	1	Parent=Os09t0550600-00
Chr09	irgsp1_rep	CDS	21779210	21779512	.	-	0	Parent=Os09t0550600-00
Chr09	irgsp1_rep	three_prime_UTR	21779201	21779209	.	-	.	Parent=Os09t0550600-00
Chr09	irgsp1_rep	mRNA	21781231	21782518	.	+	.	ID=Os09t0550650-00;Name=Os09t0550650-00;Locus_id=Os09g0550650;Note=Hypothetical protein.;Transcript_evidence=BT061482 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0550650-00
Chr09	irgsp1_rep	five_prime_UTR	21781231	21781974	.	+	.	Parent=Os09t0550650-00
Chr09	irgsp1_rep	CDS	21781975	21782505	.	+	0	Parent=Os09t0550650-00
Chr09	irgsp1_rep	three_prime_UTR	21782506	21782518	.	+	.	Parent=Os09t0550650-00
Chr09	irgsp1_rep	mRNA	21797009	21801244	.	-	.	ID=Os09t0551000-00;Name=Os09t0551000-00;Locus_id=Os09g0551000;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8BE66 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Serine-threonine/tyrosine-protein kinase (IPR001245),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Apple-like (IPR003609),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os09t0551000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	21799918	21801244	.	-	0	Parent=Os09t0551000-00
Chr09	irgsp1_rep	CDS	21799656	21799757	.	-	2	Parent=Os09t0551000-00
Chr09	irgsp1_rep	CDS	21799370	21799563	.	-	2	Parent=Os09t0551000-00
Chr09	irgsp1_rep	CDS	21799062	21799282	.	-	0	Parent=Os09t0551000-00
Chr09	irgsp1_rep	CDS	21798504	21798651	.	-	1	Parent=Os09t0551000-00
Chr09	irgsp1_rep	CDS	21798089	21798384	.	-	0	Parent=Os09t0551000-00
Chr09	irgsp1_rep	CDS	21797233	21797300	.	-	1	Parent=Os09t0551000-00
Chr09	irgsp1_rep	CDS	21797009	21797118	.	-	2	Parent=Os09t0551000-00
Chr09	irgsp1_rep	mRNA	21800164	21801380	.	+	.	ID=Os09t0551100-01;Name=Os09t0551100-01;Locus_id=Os09g0551100;Note=Hypothetical protein.;Transcript_evidence=AK107540 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-129-H08;TENOR=Os09t0551100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	21800164	21800164	.	+	.	Parent=Os09t0551100-01
Chr09	irgsp1_rep	CDS	21800165	21801103	.	+	0	Parent=Os09t0551100-01
Chr09	irgsp1_rep	three_prime_UTR	21801104	21801380	.	+	.	Parent=Os09t0551100-01
Chr09	irgsp1_rep	mRNA	21807839	21816182	.	-	.	ID=Os09t0551201-00;Name=Os09t0551201-00;Locus_id=Os09g0551201;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8LLI4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Epidermal growth factor-like%2C type 3 (IPR000742),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os09t0551201-00;KEGG=Os09t0551201-00
Chr09	irgsp1_rep	CDS	21814877	21816182	.	-	0	Parent=Os09t0551201-00
Chr09	irgsp1_rep	CDS	21808471	21808664	.	-	2	Parent=Os09t0551201-00
Chr09	irgsp1_rep	CDS	21808157	21808364	.	-	0	Parent=Os09t0551201-00
Chr09	irgsp1_rep	CDS	21807839	21808077	.	-	2	Parent=Os09t0551201-00
Chr09	irgsp1_rep	mRNA	21816295	21820409	.	-	.	ID=Os09t0551251-00;Name=Os09t0551251-00;Locus_id=Os09g0551251;Note=Similar to H0105C05.10 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q25A21 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os09t0551251-00
Chr09	irgsp1_rep	CDS	21819101	21820409	.	-	0	Parent=Os09t0551251-00
Chr09	irgsp1_rep	CDS	21818590	21818759	.	-	2	Parent=Os09t0551251-00
Chr09	irgsp1_rep	CDS	21818274	21818481	.	-	0	Parent=Os09t0551251-00
Chr09	irgsp1_rep	CDS	21817963	21818200	.	-	2	Parent=Os09t0551251-00
Chr09	irgsp1_rep	CDS	21817724	21817874	.	-	1	Parent=Os09t0551251-00
Chr09	irgsp1_rep	CDS	21817316	21817620	.	-	0	Parent=Os09t0551251-00
Chr09	irgsp1_rep	CDS	21816295	21816337	.	-	1	Parent=Os09t0551251-00
Chr09	irgsp1_rep	mRNA	21828178	21832911	.	+	.	ID=Os09t0551300-01;Name=Os09t0551300-01;Locus_id=Os09g0551300;Note=Similar to predicted protein.;Transcript_evidence=AK073242 (DDBJ%2C Best hit);ORF_evidence=D0MX46 (UniProt);GO=Biological Process: rRNA processing (GO:0006364),Molecular Function: RNA binding (GO:0003723),Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757);InterPro=Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (IPR001678),Nop2p (IPR011023),Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p%2C conserved site (IPR018314),RNA (C5-cytosine) methyltransferase (IPR023267),RNA (C5-cytosine) methyltransferase%2C NOP2 (IPR023273);NIAS_FLcDNA=J033013G23;Expression=AK073242;TENOR=Os09t0551300-01;KEGG=Os09t0551300-01
Chr09	irgsp1_rep	five_prime_UTR	21828178	21828264	.	+	.	Parent=Os09t0551300-01
Chr09	irgsp1_rep	CDS	21828265	21828643	.	+	0	Parent=Os09t0551300-01
Chr09	irgsp1_rep	CDS	21828824	21828987	.	+	2	Parent=Os09t0551300-01
Chr09	irgsp1_rep	CDS	21829066	21829129	.	+	0	Parent=Os09t0551300-01
Chr09	irgsp1_rep	CDS	21829394	21829527	.	+	2	Parent=Os09t0551300-01
Chr09	irgsp1_rep	CDS	21829695	21829778	.	+	0	Parent=Os09t0551300-01
Chr09	irgsp1_rep	CDS	21829919	21829993	.	+	0	Parent=Os09t0551300-01
Chr09	irgsp1_rep	CDS	21830076	21830147	.	+	0	Parent=Os09t0551300-01
Chr09	irgsp1_rep	CDS	21830245	21830318	.	+	0	Parent=Os09t0551300-01
Chr09	irgsp1_rep	CDS	21830578	21830630	.	+	1	Parent=Os09t0551300-01
Chr09	irgsp1_rep	CDS	21830748	21830857	.	+	2	Parent=Os09t0551300-01
Chr09	irgsp1_rep	CDS	21831187	21831255	.	+	0	Parent=Os09t0551300-01
Chr09	irgsp1_rep	CDS	21831337	21831411	.	+	0	Parent=Os09t0551300-01
Chr09	irgsp1_rep	CDS	21831912	21832004	.	+	0	Parent=Os09t0551300-01
Chr09	irgsp1_rep	CDS	21832083	21832162	.	+	0	Parent=Os09t0551300-01
Chr09	irgsp1_rep	CDS	21832270	21832369	.	+	1	Parent=Os09t0551300-01
Chr09	irgsp1_rep	CDS	21832543	21832911	.	+	0	Parent=Os09t0551300-01
Chr09	irgsp1_rep	mRNA	21828178	21833462	.	+	.	ID=Os09t0551300-02;Name=Os09t0551300-02;Locus_id=Os09g0551300;Note=Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p domain containing protein.;Transcript_evidence=AK066732 (DDBJ%2C Best hit);ORF_evidence=D0MX46 (UniProt);GO=Biological Process: rRNA processing (GO:0006364),Molecular Function: RNA binding (GO:0003723),Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757);InterPro=Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (IPR001678),Nop2p (IPR011023),Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p%2C conserved site (IPR018314),RNA (C5-cytosine) methyltransferase (IPR023267),RNA (C5-cytosine) methyltransferase%2C NOP2 (IPR023273);NIAS_FLcDNA=J013077L22;Expression=AK066732;TENOR=Os09t0551300-02;KEGG=Os09t0551300-02
Chr09	irgsp1_rep	five_prime_UTR	21828178	21828264	.	+	.	Parent=Os09t0551300-02
Chr09	irgsp1_rep	CDS	21828265	21828643	.	+	0	Parent=Os09t0551300-02
Chr09	irgsp1_rep	CDS	21828824	21828987	.	+	2	Parent=Os09t0551300-02
Chr09	irgsp1_rep	CDS	21829066	21829129	.	+	0	Parent=Os09t0551300-02
Chr09	irgsp1_rep	CDS	21829394	21829527	.	+	2	Parent=Os09t0551300-02
Chr09	irgsp1_rep	CDS	21829695	21829778	.	+	0	Parent=Os09t0551300-02
Chr09	irgsp1_rep	CDS	21829919	21829993	.	+	0	Parent=Os09t0551300-02
Chr09	irgsp1_rep	CDS	21830076	21830147	.	+	0	Parent=Os09t0551300-02
Chr09	irgsp1_rep	CDS	21830245	21830318	.	+	0	Parent=Os09t0551300-02
Chr09	irgsp1_rep	CDS	21830578	21830630	.	+	1	Parent=Os09t0551300-02
Chr09	irgsp1_rep	CDS	21830748	21830857	.	+	2	Parent=Os09t0551300-02
Chr09	irgsp1_rep	CDS	21831187	21831255	.	+	0	Parent=Os09t0551300-02
Chr09	irgsp1_rep	CDS	21831337	21831411	.	+	0	Parent=Os09t0551300-02
Chr09	irgsp1_rep	CDS	21831912	21832004	.	+	0	Parent=Os09t0551300-02
Chr09	irgsp1_rep	CDS	21832083	21832162	.	+	0	Parent=Os09t0551300-02
Chr09	irgsp1_rep	CDS	21832270	21832369	.	+	1	Parent=Os09t0551300-02
Chr09	irgsp1_rep	CDS	21832543	21832979	.	+	0	Parent=Os09t0551300-02
Chr09	irgsp1_rep	CDS	21833069	21833105	.	+	1	Parent=Os09t0551300-02
Chr09	irgsp1_rep	three_prime_UTR	21833106	21833462	.	+	.	Parent=Os09t0551300-02
Chr09	irgsp1_rep	mRNA	21841355	21845258	.	+	.	ID=Os09t0551400-00;Name=Os09t0551400-00;Locus_id=Os09g0551400;Oryzabase Gene Name Synonym(s)=Receptor kinase 5;Note=Similar to S-locus receptor-like kinase RLK14.;Transcript_evidence=AK374103 (DDBJ);ORF_evidence=Q8LLI4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=23078;TENOR=Os09t0551400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	21841355	21841355	.	+	.	Parent=Os09t0551400-00
Chr09	irgsp1_rep	CDS	21841356	21842664	.	+	0	Parent=Os09t0551400-00
Chr09	irgsp1_rep	CDS	21843305	21843406	.	+	2	Parent=Os09t0551400-00
Chr09	irgsp1_rep	CDS	21843488	21843684	.	+	2	Parent=Os09t0551400-00
Chr09	irgsp1_rep	CDS	21843789	21843996	.	+	0	Parent=Os09t0551400-00
Chr09	irgsp1_rep	CDS	21844078	21844315	.	+	2	Parent=Os09t0551400-00
Chr09	irgsp1_rep	CDS	21844403	21844553	.	+	1	Parent=Os09t0551400-00
Chr09	irgsp1_rep	CDS	21844931	21845242	.	+	0	Parent=Os09t0551400-00
Chr09	irgsp1_rep	three_prime_UTR	21845243	21845258	.	+	.	Parent=Os09t0551400-00
Chr09	irgsp1_rep	mRNA	21846582	21850168	.	-	.	ID=Os09t0551500-00;Name=Os09t0551500-00;Locus_id=Os09g0551500;Note=Similar to S-locus receptor-like kinase RLK14.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8LLI4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os09t0551500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	21848890	21850168	.	-	0	Parent=Os09t0551500-00
Chr09	irgsp1_rep	CDS	21848114	21848212	.	-	2	Parent=Os09t0551500-00
Chr09	irgsp1_rep	CDS	21847839	21848032	.	-	2	Parent=Os09t0551500-00
Chr09	irgsp1_rep	CDS	21847551	21847758	.	-	0	Parent=Os09t0551500-00
Chr09	irgsp1_rep	CDS	21847228	21847465	.	-	2	Parent=Os09t0551500-00
Chr09	irgsp1_rep	CDS	21846986	21847136	.	-	1	Parent=Os09t0551500-00
Chr09	irgsp1_rep	CDS	21846582	21846887	.	-	0	Parent=Os09t0551500-00
Chr09	irgsp1_rep	mRNA	21848993	21850131	.	+	.	ID=Os09t0551550-00;Name=Os09t0551550-00;Locus_id=Os09g0551550;Note=Hypothetical protein.;Transcript_evidence=EU957022 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0551550-00
Chr09	irgsp1_rep	CDS	21848993	21850063	.	+	0	Parent=Os09t0551550-00
Chr09	irgsp1_rep	three_prime_UTR	21850064	21850131	.	+	.	Parent=Os09t0551550-00
Chr09	irgsp1_rep	mRNA	21856873	21858935	.	+	.	ID=Os09t0551600-01;Name=Os09t0551600-01;Locus_id=Os09g0551600;Oryzabase Gene Name Synonym(s)=HMG protein%2C high-mobility group protein;Note=Similar to HMGd1 protein (Nucleasome/Chromatin assembly factor D protein NFD101).;Transcript_evidence=AK066658 (DDBJ%2C Best hit);ORF_evidence=O04418 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=High mobility group%2C HMG1/HMG2 (IPR000910),High mobility group%2C superfamily (IPR009071);NIAS_FLcDNA=J013071N11;Oryzabase=16013;Expression=AK066658;TENOR=Os09t0551600-01;KEGG=Os09t0551600-01
Chr09	irgsp1_rep	five_prime_UTR	21856873	21856973	.	+	.	Parent=Os09t0551600-01
Chr09	irgsp1_rep	five_prime_UTR	21857107	21857114	.	+	.	Parent=Os09t0551600-01
Chr09	irgsp1_rep	CDS	21857115	21857152	.	+	0	Parent=Os09t0551600-01
Chr09	irgsp1_rep	CDS	21857255	21857332	.	+	1	Parent=Os09t0551600-01
Chr09	irgsp1_rep	CDS	21857427	21857484	.	+	1	Parent=Os09t0551600-01
Chr09	irgsp1_rep	CDS	21857584	21857628	.	+	0	Parent=Os09t0551600-01
Chr09	irgsp1_rep	CDS	21858248	21858328	.	+	0	Parent=Os09t0551600-01
Chr09	irgsp1_rep	CDS	21858409	21858480	.	+	0	Parent=Os09t0551600-01
Chr09	irgsp1_rep	CDS	21858577	21858588	.	+	0	Parent=Os09t0551600-01
Chr09	irgsp1_rep	three_prime_UTR	21858589	21858935	.	+	.	Parent=Os09t0551600-01
Chr09	irgsp1_rep	mRNA	21859819	21868166	.	-	.	ID=Os09t0551800-00;Name=Os09t0551800-00;Locus_id=Os09g0551800;Note=Helicase-like%2C DEXD box c2 type domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q69MM1 (UniProt);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP-dependent DNA helicase activity (GO:0004003),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026),Molecular Function: hydrolase activity%2C acting on acid anhydrides (GO:0016817),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides (GO:0016818);InterPro=Helicase-like%2C DEXD box c2 type (IPR006554),Helicase%2C ATP-dependent%2C c2 type (IPR006555),DEAD2 (IPR010614),Helicase%2C superfamily 1/2%2C ATP-binding domain%2C DinG/Rad3-type (IPR014013);TENOR=Os09t0551800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	21867809	21868166	.	-	0	Parent=Os09t0551800-00
Chr09	irgsp1_rep	CDS	21867639	21867693	.	-	2	Parent=Os09t0551800-00
Chr09	irgsp1_rep	CDS	21867481	21867556	.	-	1	Parent=Os09t0551800-00
Chr09	irgsp1_rep	CDS	21867118	21867182	.	-	0	Parent=Os09t0551800-00
Chr09	irgsp1_rep	CDS	21866993	21867037	.	-	1	Parent=Os09t0551800-00
Chr09	irgsp1_rep	CDS	21866803	21866903	.	-	1	Parent=Os09t0551800-00
Chr09	irgsp1_rep	CDS	21866562	21866703	.	-	2	Parent=Os09t0551800-00
Chr09	irgsp1_rep	CDS	21866397	21866458	.	-	1	Parent=Os09t0551800-00
Chr09	irgsp1_rep	CDS	21866232	21866311	.	-	2	Parent=Os09t0551800-00
Chr09	irgsp1_rep	CDS	21866067	21866137	.	-	0	Parent=Os09t0551800-00
Chr09	irgsp1_rep	CDS	21865602	21865689	.	-	1	Parent=Os09t0551800-00
Chr09	irgsp1_rep	CDS	21865395	21865467	.	-	0	Parent=Os09t0551800-00
Chr09	irgsp1_rep	CDS	21865231	21865323	.	-	2	Parent=Os09t0551800-00
Chr09	irgsp1_rep	CDS	21864786	21864903	.	-	2	Parent=Os09t0551800-00
Chr09	irgsp1_rep	CDS	21864387	21864480	.	-	1	Parent=Os09t0551800-00
Chr09	irgsp1_rep	CDS	21864173	21864256	.	-	0	Parent=Os09t0551800-00
Chr09	irgsp1_rep	CDS	21863933	21864089	.	-	0	Parent=Os09t0551800-00
Chr09	irgsp1_rep	CDS	21863635	21863822	.	-	2	Parent=Os09t0551800-00
Chr09	irgsp1_rep	CDS	21863401	21863492	.	-	0	Parent=Os09t0551800-00
Chr09	irgsp1_rep	CDS	21863061	21863182	.	-	1	Parent=Os09t0551800-00
Chr09	irgsp1_rep	CDS	21862677	21862801	.	-	2	Parent=Os09t0551800-00
Chr09	irgsp1_rep	CDS	21862196	21862605	.	-	0	Parent=Os09t0551800-00
Chr09	irgsp1_rep	CDS	21861292	21862114	.	-	1	Parent=Os09t0551800-00
Chr09	irgsp1_rep	CDS	21861058	21861111	.	-	0	Parent=Os09t0551800-00
Chr09	irgsp1_rep	CDS	21860838	21860960	.	-	0	Parent=Os09t0551800-00
Chr09	irgsp1_rep	CDS	21859819	21859836	.	-	0	Parent=Os09t0551800-00
Chr09	irgsp1_rep	mRNA	21868631	21877768	.	-	.	ID=Os09t0551900-01;Name=Os09t0551900-01;Locus_id=Os09g0551900;Note=Hypothetical conserved gene.;Transcript_evidence=AK287685 (DDBJ%2C Best hit);ORF_evidence=Q69MM0 (UniProt);GO=Biological Process: mismatch repair (GO:0006298),Molecular Function: ATP binding (GO:0005524),Molecular Function: mismatched DNA binding (GO:0030983);InterPro=DNA mismatch repair protein (IPR002099),ATPase-like%2C ATP-binding domain (IPR003594);NIAS_FLcDNA=J065124P13;TENOR=Os09t0551900-01;KEGG=Os09t0551900-01
Chr09	irgsp1_rep	five_prime_UTR	21877477	21877768	.	-	.	Parent=Os09t0551900-01
Chr09	irgsp1_rep	five_prime_UTR	21876923	21876931	.	-	.	Parent=Os09t0551900-01
Chr09	irgsp1_rep	CDS	21876797	21876922	.	-	0	Parent=Os09t0551900-01
Chr09	irgsp1_rep	CDS	21876662	21876713	.	-	0	Parent=Os09t0551900-01
Chr09	irgsp1_rep	CDS	21876523	21876570	.	-	2	Parent=Os09t0551900-01
Chr09	irgsp1_rep	CDS	21875603	21875760	.	-	2	Parent=Os09t0551900-01
Chr09	irgsp1_rep	CDS	21875456	21875513	.	-	0	Parent=Os09t0551900-01
Chr09	irgsp1_rep	CDS	21875265	21875322	.	-	2	Parent=Os09t0551900-01
Chr09	irgsp1_rep	CDS	21875072	21875164	.	-	1	Parent=Os09t0551900-01
Chr09	irgsp1_rep	CDS	21874817	21874982	.	-	1	Parent=Os09t0551900-01
Chr09	irgsp1_rep	CDS	21874651	21874734	.	-	0	Parent=Os09t0551900-01
Chr09	irgsp1_rep	three_prime_UTR	21874405	21874650	.	-	.	Parent=Os09t0551900-01
Chr09	irgsp1_rep	three_prime_UTR	21874103	21874181	.	-	.	Parent=Os09t0551900-01
Chr09	irgsp1_rep	three_prime_UTR	21873953	21873997	.	-	.	Parent=Os09t0551900-01
Chr09	irgsp1_rep	three_prime_UTR	21872468	21873871	.	-	.	Parent=Os09t0551900-01
Chr09	irgsp1_rep	three_prime_UTR	21872293	21872386	.	-	.	Parent=Os09t0551900-01
Chr09	irgsp1_rep	three_prime_UTR	21871808	21872190	.	-	.	Parent=Os09t0551900-01
Chr09	irgsp1_rep	three_prime_UTR	21871112	21871156	.	-	.	Parent=Os09t0551900-01
Chr09	irgsp1_rep	three_prime_UTR	21870980	21871033	.	-	.	Parent=Os09t0551900-01
Chr09	irgsp1_rep	three_prime_UTR	21870721	21870824	.	-	.	Parent=Os09t0551900-01
Chr09	irgsp1_rep	three_prime_UTR	21870280	21870328	.	-	.	Parent=Os09t0551900-01
Chr09	irgsp1_rep	three_prime_UTR	21869660	21869719	.	-	.	Parent=Os09t0551900-01
Chr09	irgsp1_rep	three_prime_UTR	21869358	21869430	.	-	.	Parent=Os09t0551900-01
Chr09	irgsp1_rep	three_prime_UTR	21869184	21869269	.	-	.	Parent=Os09t0551900-01
Chr09	irgsp1_rep	three_prime_UTR	21868631	21869048	.	-	.	Parent=Os09t0551900-01
Chr09	irgsp1_rep	mRNA	21881165	21884622	.	-	.	ID=Os09t0552300-01;Name=Os09t0552300-01;Locus_id=Os09g0552300;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK111721 (DDBJ%2C Best hit);ORF_evidence=NP_179344.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023026H17;Expression=AK111721;TENOR=Os09t0552300-01;KEGG=Os09t0552300-01 (EC:2.7.11.1)
Chr09	irgsp1_rep	five_prime_UTR	21884373	21884622	.	-	.	Parent=Os09t0552300-01
Chr09	irgsp1_rep	CDS	21884172	21884372	.	-	0	Parent=Os09t0552300-01
Chr09	irgsp1_rep	CDS	21882926	21883714	.	-	0	Parent=Os09t0552300-01
Chr09	irgsp1_rep	CDS	21881937	21881984	.	-	0	Parent=Os09t0552300-01
Chr09	irgsp1_rep	CDS	21881633	21881860	.	-	0	Parent=Os09t0552300-01
Chr09	irgsp1_rep	three_prime_UTR	21881165	21881632	.	-	.	Parent=Os09t0552300-01
Chr09	irgsp1_rep	mRNA	21891811	21893285	.	-	.	ID=Os09t0552500-01;Name=Os09t0552500-01;Locus_id=Os09g0552500;Note=RmlC-like jelly roll fold domain containing protein.;Transcript_evidence=AK108790 (DDBJ%2C Best hit);ORF_evidence=B9G4Y6 (UniProt);GO=Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710);NIAS_FLcDNA=002-151-B06;Expression=AK108790;TENOR=Os09t0552500-01;KEGG=Os09t0552500-01
Chr09	irgsp1_rep	five_prime_UTR	21893188	21893285	.	-	.	Parent=Os09t0552500-01
Chr09	irgsp1_rep	CDS	21892256	21893187	.	-	0	Parent=Os09t0552500-01
Chr09	irgsp1_rep	CDS	21892040	21892160	.	-	1	Parent=Os09t0552500-01
Chr09	irgsp1_rep	three_prime_UTR	21891811	21892039	.	-	.	Parent=Os09t0552500-01
Chr09	irgsp1_rep	mRNA	21895552	21896982	.	-	.	ID=Os09t0552600-01;Name=Os09t0552600-01;Locus_id=Os09g0552600;Note=RmlC-like jelly roll fold domain containing protein.;Transcript_evidence=AK108700 (DDBJ%2C Best hit);ORF_evidence=A2Z3V4 (UniProt);GO=Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710);NIAS_FLcDNA=002-149-H02;Expression=AK108700;TENOR=Os09t0552600-01;KEGG=Os09t0552600-01
Chr09	irgsp1_rep	five_prime_UTR	21896916	21896982	.	-	.	Parent=Os09t0552600-01
Chr09	irgsp1_rep	CDS	21895972	21896915	.	-	0	Parent=Os09t0552600-01
Chr09	irgsp1_rep	CDS	21895767	21895887	.	-	1	Parent=Os09t0552600-01
Chr09	irgsp1_rep	three_prime_UTR	21895552	21895766	.	-	.	Parent=Os09t0552600-01
Chr09	irgsp1_rep	mRNA	21902714	21905486	.	+	.	ID=Os09t0552800-00;Name=Os09t0552800-00;Locus_id=Os09g0552800;CGSNL Gene Symbol=NAC109;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 109;Oryzabase Gene Symbol Synonym(s)=ONAC109;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 109;Note=No apical meristem (NAM) protein domain containing protein.;Transcript_evidence=AK361030 (DDBJ);ORF_evidence=B9G4Y8 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);Oryzabase=15870;TENOR=Os09t0552800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	21902714	21903200	.	+	0	Parent=Os09t0552800-00
Chr09	irgsp1_rep	CDS	21903375	21903658	.	+	2	Parent=Os09t0552800-00
Chr09	irgsp1_rep	CDS	21904730	21905059	.	+	0	Parent=Os09t0552800-00
Chr09	irgsp1_rep	three_prime_UTR	21905060	21905486	.	+	.	Parent=Os09t0552800-00
Chr09	irgsp1_rep	mRNA	21907615	21908009	.	+	.	ID=Os09t0552900-00;Name=Os09t0552900-00;Locus_id=Os09g0552900;CGSNL Gene Symbol=NAC110;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 110;Oryzabase Gene Symbol Synonym(s)=ONAC110;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 110;Note=Similar to NAC domain protein%2C IPR003441.;Transcript_evidence=EU942489 (DDBJ);ORF_evidence=XP_002318332.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);Oryzabase=15871;TENOR=Os09t0552900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	21907615	21907637	.	+	.	Parent=Os09t0552900-00
Chr09	irgsp1_rep	CDS	21907638	21907794	.	+	0	Parent=Os09t0552900-00
Chr09	irgsp1_rep	CDS	21907900	21907916	.	+	2	Parent=Os09t0552900-00
Chr09	irgsp1_rep	three_prime_UTR	21907917	21908009	.	+	.	Parent=Os09t0552900-00
Chr09	irgsp1_rep	mRNA	21912086	21912668	.	-	.	ID=Os09t0553100-00;Name=Os09t0553100-00;Locus_id=Os09g0553100;Oryzabase Gene Symbol Synonym(s)=H4;Oryzabase Gene Name Synonym(s)=HISTONE4%2C Histone H4;Note=Similar to Histone H4.;Transcript_evidence=CU406630 (DDBJ%2C Best hit);ORF_evidence=B6T0P4 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H4 (IPR001951),Histone core (IPR007125),Histone-fold (IPR009072),Histone H4%2C conserved site (IPR019809);Oryzabase=22420;TENOR=Os09t0553100-00;KEGG=Os09t0553100-00
Chr09	irgsp1_rep	five_prime_UTR	21912592	21912668	.	-	.	Parent=Os09t0553100-00
Chr09	irgsp1_rep	CDS	21912280	21912591	.	-	0	Parent=Os09t0553100-00
Chr09	irgsp1_rep	three_prime_UTR	21912086	21912279	.	-	.	Parent=Os09t0553100-00
Chr09	irgsp1_rep	mRNA	21917324	21922399	.	+	.	ID=Os09t0553200-01;Name=Os09t0553200-01;Locus_id=Os09g0553200;RAP-DB Gene Symbol Synonym(s)=UGP1%2C Ugp1%2C OsUgp1%2C UGP2%2C UGP3;RAP-DB Gene Name Synonym(s)=UDP-GLUCOSE PYROPHOSPHORYLASE 1%2C UDP-Glucose Pyrophosphorylase1%2C UDP-Glucose Pyrophosphorylase 1%2C UGPase 1%2C UGPase%2C UTP:glucose phosphate uridylyltransferase;CGSNL Gene Symbol=UGP1;CGSNL Gene Name=UDP-GLUCOSE PYROPHOSPHORYLASE 1;Oryzabase Gene Symbol Synonym(s)=Ugp1%2C OsUgp1%2C UGP2%2C UGP3;Oryzabase Gene Name Synonym(s)=UDP-Glucose Pyrophosphorylase1%2C UDP-Glucose Pyrophosphorylase 1%2C UGPase 1%2C UGPase%2C UTP:glucose phosphate uridylyltransferase;Note=UDPase%2C Pollen mother cell (PMC) meiosis%2C Pollen development;Transcript_evidence=DQ395328 (Genbank),AB062606 (Genbank),AK119197 (Genbank),AK065780 (Genbank),AK104344 (Genbank),AK103930 (Genbank);ORF_evidence=A3QQQ3 (UniProt),Q93X08 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=UTP--glucose-1-phosphate uridylyltransferase (IPR002618),UTP--glucose-1-phosphate uridylyltransferase%2C subgroup (IPR016267);NIAS_FLcDNA=001-041-C12,J013039M01,001-013-E03,001-034-B12;Manual Curation=August 20%2C 2009;Literature_PMID=12582522,17400897;Oryzabase=7490;TENOR=Os09t0553200-01
Chr09	irgsp1_rep	five_prime_UTR	21917324	21917411	.	+	.	Parent=Os09t0553200-01
Chr09	irgsp1_rep	CDS	21917412	21917479	.	+	0	Parent=Os09t0553200-01
Chr09	irgsp1_rep	CDS	21917598	21917645	.	+	1	Parent=Os09t0553200-01
Chr09	irgsp1_rep	CDS	21917729	21917820	.	+	1	Parent=Os09t0553200-01
Chr09	irgsp1_rep	CDS	21917948	21918038	.	+	2	Parent=Os09t0553200-01
Chr09	irgsp1_rep	CDS	21919053	21919113	.	+	1	Parent=Os09t0553200-01
Chr09	irgsp1_rep	CDS	21919203	21919280	.	+	0	Parent=Os09t0553200-01
Chr09	irgsp1_rep	CDS	21919372	21919422	.	+	0	Parent=Os09t0553200-01
Chr09	irgsp1_rep	CDS	21919511	21919584	.	+	0	Parent=Os09t0553200-01
Chr09	irgsp1_rep	CDS	21919699	21919771	.	+	1	Parent=Os09t0553200-01
Chr09	irgsp1_rep	CDS	21920155	21920212	.	+	0	Parent=Os09t0553200-01
Chr09	irgsp1_rep	CDS	21920316	21920362	.	+	2	Parent=Os09t0553200-01
Chr09	irgsp1_rep	CDS	21920438	21920503	.	+	0	Parent=Os09t0553200-01
Chr09	irgsp1_rep	CDS	21920720	21920752	.	+	0	Parent=Os09t0553200-01
Chr09	irgsp1_rep	CDS	21920838	21920890	.	+	0	Parent=Os09t0553200-01
Chr09	irgsp1_rep	CDS	21920965	21921040	.	+	1	Parent=Os09t0553200-01
Chr09	irgsp1_rep	CDS	21921122	21921178	.	+	0	Parent=Os09t0553200-01
Chr09	irgsp1_rep	CDS	21921267	21921350	.	+	0	Parent=Os09t0553200-01
Chr09	irgsp1_rep	CDS	21921430	21921528	.	+	0	Parent=Os09t0553200-01
Chr09	irgsp1_rep	CDS	21921653	21921757	.	+	0	Parent=Os09t0553200-01
Chr09	irgsp1_rep	CDS	21921968	21922036	.	+	0	Parent=Os09t0553200-01
Chr09	irgsp1_rep	CDS	21922144	21922170	.	+	0	Parent=Os09t0553200-01
Chr09	irgsp1_rep	three_prime_UTR	21922171	21922399	.	+	.	Parent=Os09t0553200-01
Chr09	irgsp1_rep	mRNA	21920150	21922356	.	-	.	ID=Os09t0553250-00;Name=Os09t0553250-00;Locus_id=Os09g0553250;Note=Hypothetical gene.;Transcript_evidence=BT016879 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0553250-00;KEGG=Os09t0553250-00
Chr09	irgsp1_rep	five_prime_UTR	21922138	21922356	.	-	.	Parent=Os09t0553250-00
Chr09	irgsp1_rep	five_prime_UTR	21921979	21922064	.	-	.	Parent=Os09t0553250-00
Chr09	irgsp1_rep	five_prime_UTR	21921694	21921766	.	-	.	Parent=Os09t0553250-00
Chr09	irgsp1_rep	CDS	21921651	21921693	.	-	0	Parent=Os09t0553250-00
Chr09	irgsp1_rep	CDS	21921444	21921526	.	-	2	Parent=Os09t0553250-00
Chr09	irgsp1_rep	CDS	21921263	21921364	.	-	0	Parent=Os09t0553250-00
Chr09	irgsp1_rep	three_prime_UTR	21921252	21921262	.	-	.	Parent=Os09t0553250-00
Chr09	irgsp1_rep	three_prime_UTR	21921120	21921161	.	-	.	Parent=Os09t0553250-00
Chr09	irgsp1_rep	three_prime_UTR	21920950	21921035	.	-	.	Parent=Os09t0553250-00
Chr09	irgsp1_rep	three_prime_UTR	21920406	21920577	.	-	.	Parent=Os09t0553250-00
Chr09	irgsp1_rep	three_prime_UTR	21920150	21920217	.	-	.	Parent=Os09t0553250-00
Chr09	irgsp1_rep	mRNA	21922941	21926057	.	-	.	ID=Os09t0553300-01;Name=Os09t0553300-01;Locus_id=Os09g0553300;Note=NUDIX hydrolase domain containing protein.;Transcript_evidence=AK109549 (DDBJ%2C Best hit);ORF_evidence=NP_565965.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: hydrolase activity (GO:0016787);InterPro=NUDIX hydrolase domain (IPR000086),WW/Rsp5/WWP (IPR001202),NUDIX hydrolase domain-like (IPR015797);NIAS_FLcDNA=002-120-G08;Expression=AK109549;TENOR=Os09t0553300-01;KEGG=Os09t0553300-01
Chr09	irgsp1_rep	five_prime_UTR	21925979	21926057	.	-	.	Parent=Os09t0553300-01
Chr09	irgsp1_rep	CDS	21925772	21925978	.	-	0	Parent=Os09t0553300-01
Chr09	irgsp1_rep	CDS	21924987	21925118	.	-	0	Parent=Os09t0553300-01
Chr09	irgsp1_rep	CDS	21924659	21924735	.	-	0	Parent=Os09t0553300-01
Chr09	irgsp1_rep	CDS	21924062	21924197	.	-	1	Parent=Os09t0553300-01
Chr09	irgsp1_rep	CDS	21923976	21923978	.	-	0	Parent=Os09t0553300-01
Chr09	irgsp1_rep	three_prime_UTR	21923835	21923975	.	-	.	Parent=Os09t0553300-01
Chr09	irgsp1_rep	three_prime_UTR	21923668	21923726	.	-	.	Parent=Os09t0553300-01
Chr09	irgsp1_rep	three_prime_UTR	21922941	21923342	.	-	.	Parent=Os09t0553300-01
Chr09	irgsp1_rep	mRNA	21931023	21934911	.	+	.	ID=Os09t0553600-01;Name=Os09t0553600-01;Locus_id=Os09g0553600;Note=Similar to NADC homolog.;Transcript_evidence=AK068240 (DDBJ%2C Best hit);ORF_evidence=NP_001077865.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Biological Process: NAD biosynthetic process (GO:0009435),Biological Process: pyridine nucleotide biosynthetic process (GO:0019363),Molecular Function: catalytic activity (GO:0003824),Molecular Function: nicotinate-nucleotide diphosphorylase (carboxylating) activity (GO:0004514),Molecular Function: transferase activity%2C transferring pentosyl groups (GO:0016763);InterPro=Quinolinate phosphoribosyl transferase%2C C-terminal (IPR002638),Nicotinate-nucleotide pyrophosphorylase (IPR004393),Aldolase-type TIM barrel (IPR013785),Quinolinate phosphoribosyl transferase%2C N-terminal (IPR022412);NIAS_FLcDNA=J013149L15;Expression=AK068240;TENOR=Os09t0553600-01;KEGG=Os09t0553600-01 (EC:2.4.2.19)
Chr09	irgsp1_rep	five_prime_UTR	21931023	21931058	.	+	.	Parent=Os09t0553600-01
Chr09	irgsp1_rep	CDS	21931059	21931314	.	+	0	Parent=Os09t0553600-01
Chr09	irgsp1_rep	CDS	21932138	21932271	.	+	2	Parent=Os09t0553600-01
Chr09	irgsp1_rep	CDS	21932372	21932435	.	+	0	Parent=Os09t0553600-01
Chr09	irgsp1_rep	CDS	21932543	21932625	.	+	2	Parent=Os09t0553600-01
Chr09	irgsp1_rep	CDS	21933020	21933103	.	+	0	Parent=Os09t0553600-01
Chr09	irgsp1_rep	CDS	21933204	21933356	.	+	0	Parent=Os09t0553600-01
Chr09	irgsp1_rep	CDS	21933543	21933719	.	+	0	Parent=Os09t0553600-01
Chr09	irgsp1_rep	CDS	21933989	21934056	.	+	0	Parent=Os09t0553600-01
Chr09	irgsp1_rep	CDS	21934289	21934385	.	+	1	Parent=Os09t0553600-01
Chr09	irgsp1_rep	three_prime_UTR	21934386	21934421	.	+	.	Parent=Os09t0553600-01
Chr09	irgsp1_rep	three_prime_UTR	21934496	21934911	.	+	.	Parent=Os09t0553600-01
Chr09	irgsp1_rep	mRNA	21937214	21938550	.	-	.	ID=Os09t0553700-01;Name=Os09t0553700-01;Locus_id=Os09g0553700;Note=Similar to PRLI-interacting factor A (Fragment).;Transcript_evidence=AK070189 (DDBJ%2C Best hit);ORF_evidence=B6TGN5 (UniProt);NIAS_FLcDNA=J023047H08;Expression=AK070189;TENOR=Os09t0553700-01;KEGG=Os09t0553700-01
Chr09	irgsp1_rep	five_prime_UTR	21938294	21938550	.	-	.	Parent=Os09t0553700-01
Chr09	irgsp1_rep	CDS	21937430	21938293	.	-	0	Parent=Os09t0553700-01
Chr09	irgsp1_rep	three_prime_UTR	21937214	21937429	.	-	.	Parent=Os09t0553700-01
Chr09	irgsp1_rep	mRNA	21937319	21938714	.	+	.	ID=Os09t0553750-00;Name=Os09t0553750-00;Locus_id=Os09g0553750;Note=Hypothetical gene.;Transcript_evidence=EU970031 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0553750-00;KEGG=Os09t0553750-00
Chr09	irgsp1_rep	five_prime_UTR	21937319	21937439	.	+	.	Parent=Os09t0553750-00
Chr09	irgsp1_rep	CDS	21937440	21938312	.	+	0	Parent=Os09t0553750-00
Chr09	irgsp1_rep	three_prime_UTR	21938313	21938714	.	+	.	Parent=Os09t0553750-00
Chr09	irgsp1_rep	mRNA	21943350	21945443	.	+	.	ID=Os09t0553800-01;Name=Os09t0553800-01;Locus_id=Os09g0553800;Note=Conserved hypothetical protein.;Transcript_evidence=AK068354 (DDBJ%2C Best hit);ORF_evidence=A3C1B9 (UniProt);NIAS_FLcDNA=J013147N11;Expression=AK068354;TENOR=Os09t0553800-01;KEGG=Os09t0553800-01
Chr09	irgsp1_rep	five_prime_UTR	21943350	21945061	.	+	.	Parent=Os09t0553800-01
Chr09	irgsp1_rep	CDS	21945062	21945283	.	+	0	Parent=Os09t0553800-01
Chr09	irgsp1_rep	three_prime_UTR	21945284	21945443	.	+	.	Parent=Os09t0553800-01
Chr09	irgsp1_rep	mRNA	21945942	21948965	.	+	.	ID=Os09t0553900-01;Name=Os09t0553900-01;Locus_id=Os09g0553900;Note=Conserved hypothetical protein.;Transcript_evidence=AK099586 (DDBJ%2C Best hit);ORF_evidence=A3C1C0 (UniProt);NIAS_FLcDNA=J013042N12;Expression=AK099586;TENOR=Os09t0553900-01;KEGG=Os09t0553900-01
Chr09	irgsp1_rep	five_prime_UTR	21945942	21946034	.	+	.	Parent=Os09t0553900-01
Chr09	irgsp1_rep	CDS	21946035	21948686	.	+	0	Parent=Os09t0553900-01
Chr09	irgsp1_rep	three_prime_UTR	21948687	21948965	.	+	.	Parent=Os09t0553900-01
Chr09	irgsp1_rep	mRNA	21949105	21952340	.	-	.	ID=Os09t0554000-01;Name=Os09t0554000-01;Locus_id=Os09g0554000;CGSNL Gene Symbol=PT20;CGSNL Gene Name=PHOSPHATE TRANSPORTER 20;Oryzabase Gene Symbol Synonym(s)=OsSTA235%2C OsPT20;Oryzabase Gene Name Synonym(s)=phosphate transporter 20;Note=Similar to Mitochondrial phosphate transporter.;Transcript_evidence=AK241216 (DDBJ%2C Best hit);ORF_evidence=NP_179319.1 (RefSeq);InterPro=Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J065123C23;Oryzabase=19506;TENOR=Os09t0554000-01;KEGG=Os09t0554000-01
Chr09	irgsp1_rep	five_prime_UTR	21952193	21952340	.	-	.	Parent=Os09t0554000-01
Chr09	irgsp1_rep	CDS	21951998	21952192	.	-	0	Parent=Os09t0554000-01
Chr09	irgsp1_rep	CDS	21951332	21951685	.	-	0	Parent=Os09t0554000-01
Chr09	irgsp1_rep	three_prime_UTR	21950435	21950649	.	-	.	Parent=Os09t0554000-01
Chr09	irgsp1_rep	three_prime_UTR	21950220	21950344	.	-	.	Parent=Os09t0554000-01
Chr09	irgsp1_rep	three_prime_UTR	21949105	21949505	.	-	.	Parent=Os09t0554000-01
Chr09	irgsp1_rep	mRNA	21954287	21954645	.	-	.	ID=Os09t0554101-00;Name=Os09t0554101-00;Locus_id=Os09g0554101;Note=Hypothetical conserved gene.;Transcript_evidence=CT835826 (DDBJ%2C Best hit);ORF_evidence=B9G4Z5 (UniProt);TENOR=Os09t0554101-00;KEGG=Os09t0554101-00
Chr09	irgsp1_rep	five_prime_UTR	21954645	21954645	.	-	.	Parent=Os09t0554101-00
Chr09	irgsp1_rep	CDS	21954423	21954644	.	-	0	Parent=Os09t0554101-00
Chr09	irgsp1_rep	three_prime_UTR	21954287	21954422	.	-	.	Parent=Os09t0554101-00
Chr09	irgsp1_rep	mRNA	21956407	21957337	.	-	.	ID=Os09t0554200-01;Name=Os09t0554200-01;Locus_id=Os09g0554200;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK108361 (DDBJ%2C Best hit);ORF_evidence=NP_001146938.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=002-142-C10;Expression=AK108361;TENOR=Os09t0554200-01;KEGG=Os09t0554200-01
Chr09	irgsp1_rep	five_prime_UTR	21957235	21957337	.	-	.	Parent=Os09t0554200-01
Chr09	irgsp1_rep	CDS	21956629	21957234	.	-	0	Parent=Os09t0554200-01
Chr09	irgsp1_rep	three_prime_UTR	21956407	21956628	.	-	.	Parent=Os09t0554200-01
Chr09	irgsp1_rep	mRNA	21963654	21968219	.	+	.	ID=Os09t0554300-01;Name=Os09t0554300-01;Locus_id=Os09g0554300;Oryzabase Gene Symbol Synonym(s)=OsPILS7a%2C PILS7a%2C OsPINL2;Oryzabase Gene Name Synonym(s)=PIN likes 7a;Note=Auxin efflux carrier domain containing protein.;Transcript_evidence=AK070682 (DDBJ%2C Best hit);ORF_evidence=NP_001147841.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Auxin efflux carrier (IPR004776);NIAS_FLcDNA=J023062B02;Oryzabase=19850;Expression=AK070682;TENOR=Os09t0554300-01;KEGG=Os09t0554300-01
Chr09	irgsp1_rep	five_prime_UTR	21963654	21963702	.	+	.	Parent=Os09t0554300-01
Chr09	irgsp1_rep	five_prime_UTR	21965049	21965079	.	+	.	Parent=Os09t0554300-01
Chr09	irgsp1_rep	CDS	21965080	21965212	.	+	0	Parent=Os09t0554300-01
Chr09	irgsp1_rep	CDS	21965295	21965376	.	+	2	Parent=Os09t0554300-01
Chr09	irgsp1_rep	CDS	21965641	21965765	.	+	1	Parent=Os09t0554300-01
Chr09	irgsp1_rep	CDS	21966099	21966223	.	+	2	Parent=Os09t0554300-01
Chr09	irgsp1_rep	CDS	21966325	21966561	.	+	0	Parent=Os09t0554300-01
Chr09	irgsp1_rep	CDS	21966654	21966773	.	+	0	Parent=Os09t0554300-01
Chr09	irgsp1_rep	CDS	21966895	21966995	.	+	0	Parent=Os09t0554300-01
Chr09	irgsp1_rep	CDS	21967099	21967151	.	+	1	Parent=Os09t0554300-01
Chr09	irgsp1_rep	CDS	21967244	21967429	.	+	2	Parent=Os09t0554300-01
Chr09	irgsp1_rep	CDS	21967550	21967674	.	+	2	Parent=Os09t0554300-01
Chr09	irgsp1_rep	three_prime_UTR	21967675	21968219	.	+	.	Parent=Os09t0554300-01
Chr09	irgsp1_rep	mRNA	22007439	22010349	.	+	.	ID=Os09t0555100-00;Name=Os09t0555100-00;Locus_id=Os09g0555100;Oryzabase Gene Symbol Synonym(s)=OsPILS7b%2C PILS7b;Oryzabase Gene Name Synonym(s)=PIN likes 7b;Note=Similar to auxin Efflux Carrier family protein.;Transcript_evidence=FP101824 (DDBJ);ORF_evidence=NP_001147841.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Auxin efflux carrier (IPR004776);Oryzabase=19851;TENOR=Os09t0555100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	22007439	22007510	.	+	.	Parent=Os09t0555100-00
Chr09	irgsp1_rep	CDS	22007511	22007645	.	+	0	Parent=Os09t0555100-00
Chr09	irgsp1_rep	CDS	22007720	22007799	.	+	0	Parent=Os09t0555100-00
Chr09	irgsp1_rep	CDS	22008135	22008259	.	+	1	Parent=Os09t0555100-00
Chr09	irgsp1_rep	CDS	22008353	22008477	.	+	2	Parent=Os09t0555100-00
Chr09	irgsp1_rep	CDS	22008555	22008773	.	+	0	Parent=Os09t0555100-00
Chr09	irgsp1_rep	CDS	22008851	22008973	.	+	0	Parent=Os09t0555100-00
Chr09	irgsp1_rep	CDS	22009054	22009154	.	+	0	Parent=Os09t0555100-00
Chr09	irgsp1_rep	CDS	22009240	22009292	.	+	1	Parent=Os09t0555100-00
Chr09	irgsp1_rep	CDS	22009365	22009550	.	+	2	Parent=Os09t0555100-00
Chr09	irgsp1_rep	CDS	22009986	22010110	.	+	2	Parent=Os09t0555100-00
Chr09	irgsp1_rep	three_prime_UTR	22010111	22010349	.	+	.	Parent=Os09t0555100-00
Chr09	irgsp1_rep	mRNA	22013784	22015249	.	+	.	ID=Os09t0555150-01;Name=Os09t0555150-01;Locus_id=Os09g0555150;Note=Sulfotransferase family protein.;Transcript_evidence=AK287898 (DDBJ%2C Best hit);ORF_evidence=NP_001149633.1 (RefSeq);GO=Molecular Function: sulfotransferase activity (GO:0008146);InterPro=Sulfotransferase domain (IPR000863);NIAS_FLcDNA=J065210I16;TENOR=Os09t0555150-01;KEGG=Os09t0555150-01
Chr09	irgsp1_rep	five_prime_UTR	22013784	22013812	.	+	.	Parent=Os09t0555150-01
Chr09	irgsp1_rep	CDS	22013813	22014970	.	+	0	Parent=Os09t0555150-01
Chr09	irgsp1_rep	three_prime_UTR	22014971	22015249	.	+	.	Parent=Os09t0555150-01
Chr09	irgsp1_rep	mRNA	22029199	22032739	.	+	.	ID=Os09t0555200-01;Name=Os09t0555200-01;Locus_id=Os09g0555200;CGSNL Gene Symbol=NRPD1B;Oryzabase Gene Symbol Synonym(s)=OsNRPD1b;Note=Similar to DNA-directed RNA polymerase.;Transcript_evidence=AK103018 (DDBJ%2C Best hit);ORF_evidence=B9G500 (UniProt);GO=Biological Process: amine metabolic process (GO:0009308),Molecular Function: copper ion binding (GO:0005507),Molecular Function: quinone binding (GO:0048038);InterPro=Copper amine oxidase%2C N2/N3-terminal (IPR015801),Protein of unknown function DUF3223 (IPR021602);NIAS_FLcDNA=J033116N09;Oryzabase=23731;Expression=AK103018;TENOR=Os09t0555200-01;KEGG=Os09t0555200-01
Chr09	irgsp1_rep	five_prime_UTR	22029199	22029199	.	+	.	Parent=Os09t0555200-01
Chr09	irgsp1_rep	CDS	22029200	22029289	.	+	0	Parent=Os09t0555200-01
Chr09	irgsp1_rep	CDS	22029577	22029750	.	+	0	Parent=Os09t0555200-01
Chr09	irgsp1_rep	CDS	22029847	22029984	.	+	0	Parent=Os09t0555200-01
Chr09	irgsp1_rep	CDS	22030320	22030579	.	+	0	Parent=Os09t0555200-01
Chr09	irgsp1_rep	CDS	22030688	22030799	.	+	1	Parent=Os09t0555200-01
Chr09	irgsp1_rep	CDS	22032120	22032302	.	+	0	Parent=Os09t0555200-01
Chr09	irgsp1_rep	three_prime_UTR	22032303	22032739	.	+	.	Parent=Os09t0555200-01
Chr09	irgsp1_rep	mRNA	22018348	22032735	.	+	.	ID=Os09t0555200-02;Name=Os09t0555200-02;Locus_id=Os09g0555200;RAP-DB Gene Symbol Synonym(s)=OsNRPD1b%2C OsNRPD1;CGSNL Gene Symbol=NRPD1B;Oryzabase Gene Symbol Synonym(s)=OsNRPD1b;Note=Largest subunit of RNA polymerase IV (Pol IV);Transcript_evidence=XM_015756206;ORF_evidence=XP_015611692;GO=Biological Process: transcription%2C DNA-templated (GO:0006351),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed 5'-3' RNA polymerase activity (GO:0003899);InterPro=RNA polymerase Rpb1%2C domain 3 superfamily (IPR042102),RNA polymerase Rpb1%2C funnel domain superfamily (IPR038120),RNA polymerase Rpb1%2C domain 1 (IPR007080),DNA-directed RNA polymerase IV/V subunit 1%2C N-terminal (IPR040403),RNA polymerase%2C N-terminal (IPR006592),RNA polymerase%2C alpha subunit (IPR000722),RNA polymerase Rpb1%2C domain 3 (IPR007066),RNA polymerase Rpb1%2C domain 4 (IPR007083);Manual Curation=June 17%2C 2020;Literature_PMID=32075556;Oryzabase=23731
Chr09	irgsp1_rep	five_prime_UTR	22018348	22018557	.	+	.	Parent=Os09t0555200-02
Chr09	irgsp1_rep	five_prime_UTR	22018979	22019105	.	+	.	Parent=Os09t0555200-02
Chr09	irgsp1_rep	five_prime_UTR	22019281	22019281	.	+	.	Parent=Os09t0555200-02
Chr09	irgsp1_rep	CDS	22019282	22019365	.	+	0	Parent=Os09t0555200-02
Chr09	irgsp1_rep	CDS	22019438	22019558	.	+	0	Parent=Os09t0555200-02
Chr09	irgsp1_rep	CDS	22019637	22019761	.	+	2	Parent=Os09t0555200-02
Chr09	irgsp1_rep	CDS	22020333	22020377	.	+	0	Parent=Os09t0555200-02
Chr09	irgsp1_rep	CDS	22020475	22020738	.	+	0	Parent=Os09t0555200-02
Chr09	irgsp1_rep	CDS	22021460	22021615	.	+	0	Parent=Os09t0555200-02
Chr09	irgsp1_rep	CDS	22021992	22022129	.	+	0	Parent=Os09t0555200-02
Chr09	irgsp1_rep	CDS	22023826	22025703	.	+	0	Parent=Os09t0555200-02
Chr09	irgsp1_rep	CDS	22025799	22025968	.	+	0	Parent=Os09t0555200-02
Chr09	irgsp1_rep	CDS	22026055	22026121	.	+	1	Parent=Os09t0555200-02
Chr09	irgsp1_rep	CDS	22026214	22026332	.	+	0	Parent=Os09t0555200-02
Chr09	irgsp1_rep	CDS	22028310	22028452	.	+	1	Parent=Os09t0555200-02
Chr09	irgsp1_rep	CDS	22029063	22029289	.	+	2	Parent=Os09t0555200-02
Chr09	irgsp1_rep	CDS	22029577	22029750	.	+	0	Parent=Os09t0555200-02
Chr09	irgsp1_rep	CDS	22029847	22029984	.	+	0	Parent=Os09t0555200-02
Chr09	irgsp1_rep	CDS	22030320	22030579	.	+	0	Parent=Os09t0555200-02
Chr09	irgsp1_rep	CDS	22030688	22030799	.	+	1	Parent=Os09t0555200-02
Chr09	irgsp1_rep	CDS	22032120	22032302	.	+	0	Parent=Os09t0555200-02
Chr09	irgsp1_rep	three_prime_UTR	22032303	22032735	.	+	.	Parent=Os09t0555200-02
Chr09	irgsp1_rep	mRNA	22034392	22036298	.	+	.	ID=Os09t0555300-00;Name=Os09t0555300-00;Locus_id=Os09g0555300;Oryzabase Gene Symbol Synonym(s)=OsFbox503%2C Os_F0101;Oryzabase Gene Name Synonym(s)=F-box protein 503;Note=Kelch-type beta propeller domain containing protein.;Transcript_evidence=AK330310 (DDBJ);ORF_evidence=NP_001063890.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Kelch repeat type 1 (IPR006652),Galactose oxidase%2C beta-propeller (IPR015916),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17273;TENOR=Os09t0555300-00;KEGG=Os09t0555300-00
Chr09	irgsp1_rep	five_prime_UTR	22034392	22034543	.	+	.	Parent=Os09t0555300-00
Chr09	irgsp1_rep	CDS	22034544	22036298	.	+	0	Parent=Os09t0555300-00
Chr09	irgsp1_rep	mRNA	22036959	22040673	.	-	.	ID=Os09t0555400-01;Name=Os09t0555400-01;Locus_id=Os09g0555400;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK073402 (DDBJ%2C Best hit);ORF_evidence=A2Z3X5 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033041F22;Expression=AK073402;TENOR=Os09t0555400-01;KEGG=Os09t0555400-01
Chr09	irgsp1_rep	five_prime_UTR	22040627	22040673	.	-	.	Parent=Os09t0555400-01
Chr09	irgsp1_rep	CDS	22038692	22040626	.	-	0	Parent=Os09t0555400-01
Chr09	irgsp1_rep	three_prime_UTR	22038568	22038691	.	-	.	Parent=Os09t0555400-01
Chr09	irgsp1_rep	three_prime_UTR	22038208	22038392	.	-	.	Parent=Os09t0555400-01
Chr09	irgsp1_rep	three_prime_UTR	22037642	22037934	.	-	.	Parent=Os09t0555400-01
Chr09	irgsp1_rep	three_prime_UTR	22036959	22037287	.	-	.	Parent=Os09t0555400-01
Chr09	irgsp1_rep	mRNA	22040614	22041040	.	+	.	ID=Os09t0555450-00;Name=Os09t0555450-00;Locus_id=Os09g0555450;Note=Conserved hypothetical protein.;Transcript_evidence=EU950356 (DDBJ);ORF_evidence=F2EDP0 (UniProt);TENOR=Os09t0555450-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	22040614	22040831	.	+	0	Parent=Os09t0555450-00
Chr09	irgsp1_rep	CDS	22040917	22041040	.	+	1	Parent=Os09t0555450-00
Chr09	irgsp1_rep	mRNA	22042098	22045048	.	-	.	ID=Os09t0555500-01;Name=Os09t0555500-01;Locus_id=Os09g0555500;Oryzabase Gene Symbol Synonym(s)=OsPSY%2C PSY%2C OsPSY3%2C PSY3;Oryzabase Gene Name Synonym(s)=phytoene synthase 3;Note=Similar to Chloroplast phytoene synthase 3.;Transcript_evidence=AK108154 (DDBJ%2C Best hit);ORF_evidence=B6UV92 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: transferase activity (GO:0016740),Molecular Function: transferase activity%2C transferring alkyl or aryl (other than methyl) groups (GO:0016765);InterPro=Squalene/phytoene synthase (IPR002060),Terpenoid synthase (IPR008949),Squalene/phytoene synthase%2C conserved site (IPR019845);NIAS_FLcDNA=002-139-G05;Oryzabase=11632;TENOR=Os09t0555500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	22045048	22045048	.	-	.	Parent=Os09t0555500-01
Chr09	irgsp1_rep	CDS	22044672	22045047	.	-	0	Parent=Os09t0555500-01
Chr09	irgsp1_rep	CDS	22043855	22043905	.	-	2	Parent=Os09t0555500-01
Chr09	irgsp1_rep	CDS	22043588	22043760	.	-	2	Parent=Os09t0555500-01
Chr09	irgsp1_rep	CDS	22042945	22043180	.	-	0	Parent=Os09t0555500-01
Chr09	irgsp1_rep	CDS	22042656	22042848	.	-	1	Parent=Os09t0555500-01
Chr09	irgsp1_rep	CDS	22042367	22042552	.	-	0	Parent=Os09t0555500-01
Chr09	irgsp1_rep	three_prime_UTR	22042098	22042366	.	-	.	Parent=Os09t0555500-01
Chr09	irgsp1_rep	mRNA	22044832	22045133	.	+	.	ID=Os09t0555550-00;Name=Os09t0555550-00;Locus_id=Os09g0555550;Note=Hypothetical protein.;Transcript_evidence=EU943211 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0555550-00
Chr09	irgsp1_rep	five_prime_UTR	22044832	22044832	.	+	.	Parent=Os09t0555550-00
Chr09	irgsp1_rep	CDS	22044833	22045133	.	+	0	Parent=Os09t0555550-00
Chr09	irgsp1_rep	mRNA	22048464	22057029	.	-	.	ID=Os09t0555600-01;Name=Os09t0555600-01;Locus_id=Os09g0555600;Oryzabase Gene Symbol Synonym(s)=ARC3;Oryzabase Gene Name Synonym(s)=accumulation and replication of chloroplast%2C ARC3 homologue;Note=MORN motif repeat containing protein.;Transcript_evidence=AK101142 (DDBJ%2C Best hit);ORF_evidence=Q6F4C9 (UniProt);GO=Biological Process: protein polymerization (GO:0051258),Cellular Component: protein complex (GO:0043234);InterPro=Tubulin/FtsZ%2C GTPase domain (IPR003008),MORN motif (IPR003409);NIAS_FLcDNA=J033026M22;Oryzabase=14058;Expression=AK101142;TENOR=Os09t0555600-01;KEGG=Os09t0555600-01
Chr09	irgsp1_rep	five_prime_UTR	22056974	22057029	.	-	.	Parent=Os09t0555600-01
Chr09	irgsp1_rep	CDS	22056720	22056973	.	-	0	Parent=Os09t0555600-01
Chr09	irgsp1_rep	CDS	22055975	22056033	.	-	1	Parent=Os09t0555600-01
Chr09	irgsp1_rep	CDS	22055793	22055857	.	-	2	Parent=Os09t0555600-01
Chr09	irgsp1_rep	CDS	22055343	22055477	.	-	0	Parent=Os09t0555600-01
Chr09	irgsp1_rep	CDS	22055141	22055189	.	-	0	Parent=Os09t0555600-01
Chr09	irgsp1_rep	CDS	22054276	22054388	.	-	2	Parent=Os09t0555600-01
Chr09	irgsp1_rep	CDS	22054120	22054191	.	-	0	Parent=Os09t0555600-01
Chr09	irgsp1_rep	CDS	22053932	22054042	.	-	0	Parent=Os09t0555600-01
Chr09	irgsp1_rep	CDS	22052818	22052999	.	-	0	Parent=Os09t0555600-01
Chr09	irgsp1_rep	CDS	22052196	22052456	.	-	1	Parent=Os09t0555600-01
Chr09	irgsp1_rep	CDS	22052005	22052087	.	-	1	Parent=Os09t0555600-01
Chr09	irgsp1_rep	CDS	22051550	22051920	.	-	2	Parent=Os09t0555600-01
Chr09	irgsp1_rep	CDS	22050782	22050886	.	-	0	Parent=Os09t0555600-01
Chr09	irgsp1_rep	CDS	22050550	22050687	.	-	0	Parent=Os09t0555600-01
Chr09	irgsp1_rep	CDS	22049323	22049489	.	-	0	Parent=Os09t0555600-01
Chr09	irgsp1_rep	CDS	22049175	22049232	.	-	1	Parent=Os09t0555600-01
Chr09	irgsp1_rep	three_prime_UTR	22049062	22049174	.	-	.	Parent=Os09t0555600-01
Chr09	irgsp1_rep	three_prime_UTR	22048464	22048944	.	-	.	Parent=Os09t0555600-01
Chr09	irgsp1_rep	mRNA	22069160	22070492	.	-	.	ID=Os09t0555700-01;Name=Os09t0555700-01;Locus_id=Os09g0555700;CGSNL Gene Symbol=IDD3;CGSNL Gene Name=INDETERMINATE DOMAIN 3;Oryzabase Gene Symbol Synonym(s)=OsIDD3;Oryzabase Gene Name Synonym(s)=indeterminate domain 3;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK061264 (DDBJ%2C Best hit);ORF_evidence=Q5UDB7 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880),Zinc finger%2C double-stranded RNA binding (IPR022755);NIAS_FLcDNA=006-212-C04;Oryzabase=13151;Expression=AK061264;TENOR=Os09t0555700-01;KEGG=Os09t0555700-01
Chr09	irgsp1_rep	five_prime_UTR	22070324	22070492	.	-	.	Parent=Os09t0555700-01
Chr09	irgsp1_rep	five_prime_UTR	22069918	22070134	.	-	.	Parent=Os09t0555700-01
Chr09	irgsp1_rep	CDS	22069749	22069917	.	-	0	Parent=Os09t0555700-01
Chr09	irgsp1_rep	CDS	22069173	22069654	.	-	2	Parent=Os09t0555700-01
Chr09	irgsp1_rep	three_prime_UTR	22069160	22069172	.	-	.	Parent=Os09t0555700-01
Chr09	irgsp1_rep	mRNA	22064474	22070450	.	-	.	ID=Os09t0555700-02;Name=Os09t0555700-02;Locus_id=Os09g0555700;RAP-DB Gene Symbol Synonym(s)=IDD3;RAP-DB Gene Name Synonym(s)=indeterminate domain 3;CGSNL Gene Symbol=IDD3;CGSNL Gene Name=INDETERMINATE DOMAIN 3;Oryzabase Gene Symbol Synonym(s)=OsIDD3;Oryzabase Gene Name Synonym(s)=indeterminate domain 3;Note=Indeterminate domain (IDD) protein%2C Regulation of defense to sheath blight disease%2C Negative regulation of plant erectness;Transcript_evidence=AK101950;ORF_evidence=B7ERE7;GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Zinc finger C2H2 superfamily (IPR036236),Zinc finger C2H2-type (IPR013087),Zinc finger%2C double-stranded RNA binding (IPR022755);NIAS_FLcDNA=J033075E02;Manual Curation=August 27%2C 2020;Literature_PMID=32842845,32140886;Oryzabase=13151;Expression=AK101950;TENOR=Os09t0555700-02;Subcellular location=nucleus (GO:0005634)
Chr09	irgsp1_rep	five_prime_UTR	22070404	22070450	.	-	.	Parent=Os09t0555700-02
Chr09	irgsp1_rep	five_prime_UTR	22069918	22070134	.	-	.	Parent=Os09t0555700-02
Chr09	irgsp1_rep	CDS	22069749	22069917	.	-	0	Parent=Os09t0555700-02
Chr09	irgsp1_rep	CDS	22069258	22069654	.	-	2	Parent=Os09t0555700-02
Chr09	irgsp1_rep	CDS	22064863	22065904	.	-	1	Parent=Os09t0555700-02
Chr09	irgsp1_rep	three_prime_UTR	22064474	22064862	.	-	.	Parent=Os09t0555700-02
Chr09	irgsp1_rep	mRNA	22064455	22069942	.	-	.	ID=Os09t0555700-03;Name=Os09t0555700-03;Locus_id=Os09g0555700;CGSNL Gene Symbol=IDD3;CGSNL Gene Name=INDETERMINATE DOMAIN 3;Oryzabase Gene Symbol Synonym(s)=OsIDD3;Oryzabase Gene Name Synonym(s)=indeterminate domain 3;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK101181 (DDBJ%2C Best hit);ORF_evidence=Q5UDB7 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880),Zinc finger%2C double-stranded RNA binding (IPR022755);NIAS_FLcDNA=J033029F02;Oryzabase=13151;Expression=AK101181;TENOR=Os09t0555700-03;KEGG=Os09t0555700-03
Chr09	irgsp1_rep	five_prime_UTR	22069918	22069942	.	-	.	Parent=Os09t0555700-03
Chr09	irgsp1_rep	CDS	22069749	22069917	.	-	0	Parent=Os09t0555700-03
Chr09	irgsp1_rep	CDS	22069258	22069654	.	-	2	Parent=Os09t0555700-03
Chr09	irgsp1_rep	CDS	22064863	22065904	.	-	1	Parent=Os09t0555700-03
Chr09	irgsp1_rep	three_prime_UTR	22064455	22064862	.	-	.	Parent=Os09t0555700-03
Chr09	irgsp1_rep	mRNA	22082886	22084928	.	-	.	ID=Os09t0555800-00;Name=Os09t0555800-00;Locus_id=Os09g0555800;Note=Similar to AMP-binding protein (Adenosine monophosphate binding protein 6 AMPBP6).;Transcript_evidence=AK356799 (DDBJ);ORF_evidence=XP_002305237.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873),AMP-binding%2C conserved site (IPR020845);TENOR=Os09t0555800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	22084898	22084928	.	-	.	Parent=Os09t0555800-00
Chr09	irgsp1_rep	CDS	22084700	22084897	.	-	0	Parent=Os09t0555800-00
Chr09	irgsp1_rep	CDS	22082901	22084436	.	-	0	Parent=Os09t0555800-00
Chr09	irgsp1_rep	three_prime_UTR	22082886	22082900	.	-	.	Parent=Os09t0555800-00
Chr09	irgsp1_rep	mRNA	22082984	22084438	.	+	.	ID=Os09t0555850-00;Name=Os09t0555850-00;Locus_id=Os09g0555850;Note=Hypothetical gene.;Transcript_evidence=EU941562 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0555850-00
Chr09	irgsp1_rep	five_prime_UTR	22082984	22082984	.	+	.	Parent=Os09t0555850-00
Chr09	irgsp1_rep	CDS	22082985	22084438	.	+	0	Parent=Os09t0555850-00
Chr09	irgsp1_rep	mRNA	22092230	22095269	.	-	.	ID=Os09t0556000-01;Name=Os09t0556000-01;Locus_id=Os09g0556000;Note=Signal peptidase 22 kDa subunit family protein.;Transcript_evidence=AK243603 (DDBJ%2C Best hit);ORF_evidence=NP_001150320.1 (RefSeq);GO=Biological Process: signal peptide processing (GO:0006465),Cellular Component: signal peptidase complex (GO:0005787),Cellular Component: integral to membrane (GO:0016021),Molecular Function: peptidase activity (GO:0008233);InterPro=Signal peptidase 22kDa subunit (IPR007653);NIAS_FLcDNA=J100085D05;TENOR=Os09t0556000-01;KEGG=Os09t0556000-01
Chr09	irgsp1_rep	five_prime_UTR	22095145	22095269	.	-	.	Parent=Os09t0556000-01
Chr09	irgsp1_rep	CDS	22095019	22095144	.	-	0	Parent=Os09t0556000-01
Chr09	irgsp1_rep	CDS	22094756	22094803	.	-	0	Parent=Os09t0556000-01
Chr09	irgsp1_rep	CDS	22094592	22094654	.	-	0	Parent=Os09t0556000-01
Chr09	irgsp1_rep	CDS	22094106	22094159	.	-	0	Parent=Os09t0556000-01
Chr09	irgsp1_rep	CDS	22093255	22093341	.	-	0	Parent=Os09t0556000-01
Chr09	irgsp1_rep	CDS	22092532	22092657	.	-	0	Parent=Os09t0556000-01
Chr09	irgsp1_rep	three_prime_UTR	22092230	22092531	.	-	.	Parent=Os09t0556000-01
Chr09	irgsp1_rep	mRNA	22098832	22102375	.	+	.	ID=Os09t0556200-00;Name=Os09t0556200-00;Locus_id=Os09g0556200;Note=Similar to predicted protein.;Transcript_evidence=AK331283 (DDBJ);ORF_evidence=E5GCC3 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Phox/Bem1p (IPR000270),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);TENOR=Os09t0556200-00;KEGG=Os09t0556200-00
Chr09	irgsp1_rep	five_prime_UTR	22098832	22098850	.	+	.	Parent=Os09t0556200-00
Chr09	irgsp1_rep	CDS	22098851	22100762	.	+	0	Parent=Os09t0556200-00
Chr09	irgsp1_rep	CDS	22101029	22101177	.	+	2	Parent=Os09t0556200-00
Chr09	irgsp1_rep	three_prime_UTR	22101178	22101247	.	+	.	Parent=Os09t0556200-00
Chr09	irgsp1_rep	three_prime_UTR	22102071	22102375	.	+	.	Parent=Os09t0556200-00
Chr09	irgsp1_rep	mRNA	22106750	22107071	.	+	.	ID=Os09t0556300-01;Name=Os09t0556300-01;Locus_id=Os09g0556300;Note=Non-protein coding transcript.;Transcript_evidence=AK105452 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-125-C04;TENOR=Os09t0556300-01
Chr09	irgsp1_rep	exon	22106750	22107071	.	+	.	Parent=Os09t0556300-01
Chr09	irgsp1_rep	mRNA	22107352	22111209	.	-	.	ID=Os09t0556400-01;Name=Os09t0556400-01;Locus_id=Os09g0556400;Note=Similar to PHT4%3B5%3B inorganic phosphate transmembrane transporter.;Transcript_evidence=AK059357 (DDBJ%2C Best hit);ORF_evidence=NP_197538.2 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=001-026-D07;TENOR=Os09t0556400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	22111209	22111209	.	-	.	Parent=Os09t0556400-01
Chr09	irgsp1_rep	CDS	22111155	22111208	.	-	0	Parent=Os09t0556400-01
Chr09	irgsp1_rep	CDS	22110425	22110498	.	-	0	Parent=Os09t0556400-01
Chr09	irgsp1_rep	CDS	22110252	22110332	.	-	1	Parent=Os09t0556400-01
Chr09	irgsp1_rep	CDS	22110010	22110178	.	-	1	Parent=Os09t0556400-01
Chr09	irgsp1_rep	CDS	22109514	22109629	.	-	0	Parent=Os09t0556400-01
Chr09	irgsp1_rep	CDS	22109044	22109080	.	-	1	Parent=Os09t0556400-01
Chr09	irgsp1_rep	CDS	22108799	22108894	.	-	0	Parent=Os09t0556400-01
Chr09	irgsp1_rep	CDS	22108392	22108533	.	-	0	Parent=Os09t0556400-01
Chr09	irgsp1_rep	CDS	22108258	22108310	.	-	2	Parent=Os09t0556400-01
Chr09	irgsp1_rep	CDS	22107967	22108053	.	-	0	Parent=Os09t0556400-01
Chr09	irgsp1_rep	CDS	22107763	22107876	.	-	0	Parent=Os09t0556400-01
Chr09	irgsp1_rep	three_prime_UTR	22107352	22107762	.	-	.	Parent=Os09t0556400-01
Chr09	irgsp1_rep	mRNA	22114202	22119961	.	-	.	ID=Os09t0556500-01;Name=Os09t0556500-01;Locus_id=Os09g0556500;Note=Cysteinyl-tRNA synthetase%2C class Ia family protein.;Transcript_evidence=AK069699 (DDBJ%2C Best hit);ORF_evidence=D0FY61 (UniProt);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: cysteinyl-tRNA aminoacylation (GO:0006423),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: cysteine-tRNA ligase activity (GO:0004817),Molecular Function: ATP binding (GO:0005524);InterPro=Aminoacyl-tRNA synthetase%2C class 1a%2C anticodon-binding (IPR009080),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Cysteinyl-tRNA synthetase%2C class Ia%2C DALR (IPR015273),Cysteinyl-tRNA synthetase%2C class Ia (IPR015803);NIAS_FLcDNA=J023027G01;Expression=AK069699;TENOR=Os09t0556500-01;KEGG=Os09t0556500-01 (EC:6.1.1.16)
Chr09	irgsp1_rep	five_prime_UTR	22119897	22119961	.	-	.	Parent=Os09t0556500-01
Chr09	irgsp1_rep	CDS	22119529	22119896	.	-	0	Parent=Os09t0556500-01
Chr09	irgsp1_rep	CDS	22118797	22118860	.	-	1	Parent=Os09t0556500-01
Chr09	irgsp1_rep	CDS	22118231	22118392	.	-	0	Parent=Os09t0556500-01
Chr09	irgsp1_rep	CDS	22117611	22117781	.	-	0	Parent=Os09t0556500-01
Chr09	irgsp1_rep	CDS	22117184	22117465	.	-	0	Parent=Os09t0556500-01
Chr09	irgsp1_rep	CDS	22116984	22117109	.	-	0	Parent=Os09t0556500-01
Chr09	irgsp1_rep	CDS	22115894	22116094	.	-	0	Parent=Os09t0556500-01
Chr09	irgsp1_rep	CDS	22115659	22115760	.	-	0	Parent=Os09t0556500-01
Chr09	irgsp1_rep	CDS	22114616	22114849	.	-	0	Parent=Os09t0556500-01
Chr09	irgsp1_rep	three_prime_UTR	22114202	22114615	.	-	.	Parent=Os09t0556500-01
Chr09	irgsp1_rep	mRNA	22131586	22134726	.	+	.	ID=Os09t0556700-01;Name=Os09t0556700-01;Locus_id=Os09g0556700;Oryzabase Gene Symbol Synonym(s)=OsSET37%2C SDG732;Oryzabase Gene Name Synonym(s)=SET protein 37;Note=SET domain domain containing protein.;Transcript_evidence=AK112101 (DDBJ%2C Best hit);ORF_evidence=B9G507 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=SET domain (IPR001214),Zinc finger%2C PHD-type (IPR001965),Post-SET domain (IPR003616),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-type%2C conserved site (IPR019786),Zinc finger%2C PHD-finger (IPR019787);NIAS_FLcDNA=002-110-B02;Oryzabase=13400;TENOR=Os09t0556700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	22131586	22131587	.	+	.	Parent=Os09t0556700-01
Chr09	irgsp1_rep	CDS	22131588	22131676	.	+	0	Parent=Os09t0556700-01
Chr09	irgsp1_rep	CDS	22131806	22131908	.	+	1	Parent=Os09t0556700-01
Chr09	irgsp1_rep	CDS	22131984	22132067	.	+	0	Parent=Os09t0556700-01
Chr09	irgsp1_rep	CDS	22132428	22132868	.	+	0	Parent=Os09t0556700-01
Chr09	irgsp1_rep	CDS	22133044	22133139	.	+	0	Parent=Os09t0556700-01
Chr09	irgsp1_rep	CDS	22133289	22133438	.	+	0	Parent=Os09t0556700-01
Chr09	irgsp1_rep	CDS	22133524	22133667	.	+	0	Parent=Os09t0556700-01
Chr09	irgsp1_rep	CDS	22133807	22133920	.	+	0	Parent=Os09t0556700-01
Chr09	irgsp1_rep	CDS	22134014	22134196	.	+	0	Parent=Os09t0556700-01
Chr09	irgsp1_rep	CDS	22134294	22134338	.	+	0	Parent=Os09t0556700-01
Chr09	irgsp1_rep	CDS	22134451	22134585	.	+	0	Parent=Os09t0556700-01
Chr09	irgsp1_rep	three_prime_UTR	22134586	22134726	.	+	.	Parent=Os09t0556700-01
Chr09	irgsp1_rep	mRNA	22132696	22134584	.	-	.	ID=Os09t0556750-00;Name=Os09t0556750-00;Locus_id=Os09g0556750;Note=Hypothetical gene.;Transcript_evidence=BT019238 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0556750-00;KEGG=Os09t0556750-00
Chr09	irgsp1_rep	five_prime_UTR	22134449	22134584	.	-	.	Parent=Os09t0556750-00
Chr09	irgsp1_rep	five_prime_UTR	22134291	22134336	.	-	.	Parent=Os09t0556750-00
Chr09	irgsp1_rep	five_prime_UTR	22134013	22134193	.	-	.	Parent=Os09t0556750-00
Chr09	irgsp1_rep	five_prime_UTR	22133872	22133919	.	-	.	Parent=Os09t0556750-00
Chr09	irgsp1_rep	CDS	22133825	22133871	.	-	0	Parent=Os09t0556750-00
Chr09	irgsp1_rep	CDS	22133522	22133685	.	-	1	Parent=Os09t0556750-00
Chr09	irgsp1_rep	CDS	22133378	22133433	.	-	2	Parent=Os09t0556750-00
Chr09	irgsp1_rep	three_prime_UTR	22133284	22133377	.	-	.	Parent=Os09t0556750-00
Chr09	irgsp1_rep	three_prime_UTR	22133067	22133128	.	-	.	Parent=Os09t0556750-00
Chr09	irgsp1_rep	three_prime_UTR	22132696	22132890	.	-	.	Parent=Os09t0556750-00
Chr09	irgsp1_rep	mRNA	22134863	22137040	.	-	.	ID=Os09t0556800-01;Name=Os09t0556800-01;Locus_id=Os09g0556800;Note=Conserved hypothetical protein.;Transcript_evidence=AK101051 (DDBJ%2C Best hit);ORF_evidence=A2Z3Y8 (UniProt);NIAS_FLcDNA=J033010E07;Expression=AK101051;TENOR=Os09t0556800-01;KEGG=Os09t0556800-01
Chr09	irgsp1_rep	five_prime_UTR	22136941	22137040	.	-	.	Parent=Os09t0556800-01
Chr09	irgsp1_rep	CDS	22136605	22136940	.	-	0	Parent=Os09t0556800-01
Chr09	irgsp1_rep	CDS	22135759	22136502	.	-	0	Parent=Os09t0556800-01
Chr09	irgsp1_rep	CDS	22135545	22135624	.	-	0	Parent=Os09t0556800-01
Chr09	irgsp1_rep	CDS	22135381	22135452	.	-	1	Parent=Os09t0556800-01
Chr09	irgsp1_rep	CDS	22135015	22135294	.	-	1	Parent=Os09t0556800-01
Chr09	irgsp1_rep	three_prime_UTR	22134863	22135014	.	-	.	Parent=Os09t0556800-01
Chr09	irgsp1_rep	mRNA	22147581	22149470	.	-	.	ID=Os09t0557250-00;Name=Os09t0557250-00;Locus_id=Os09g0557250;Note=Non-protein coding transcript.;Transcript_evidence=FP095467 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0557250-00
Chr09	irgsp1_rep	exon	22149146	22149470	.	-	.	Parent=Os09t0557250-00
Chr09	irgsp1_rep	exon	22147581	22147787	.	-	.	Parent=Os09t0557250-00
Chr09	irgsp1_rep	mRNA	22152690	22155609	.	-	.	ID=Os09t0557400-01;Name=Os09t0557400-01;Locus_id=Os09g0557400;Note=Mitochondrial glycoprotein family protein.;Transcript_evidence=AK099503 (DDBJ%2C Best hit);ORF_evidence=NP_001150307.1 (RefSeq);GO=Cellular Component: mitochondrial matrix (GO:0005759);InterPro=Mitochondrial glycoprotein (IPR003428);NIAS_FLcDNA=J013028N01;Expression=AK099503;TENOR=Os09t0557400-01;KEGG=Os09t0557400-01
Chr09	irgsp1_rep	five_prime_UTR	22155579	22155609	.	-	.	Parent=Os09t0557400-01
Chr09	irgsp1_rep	CDS	22155405	22155578	.	-	0	Parent=Os09t0557400-01
Chr09	irgsp1_rep	CDS	22154955	22155295	.	-	0	Parent=Os09t0557400-01
Chr09	irgsp1_rep	CDS	22154718	22154877	.	-	1	Parent=Os09t0557400-01
Chr09	irgsp1_rep	three_prime_UTR	22154694	22154717	.	-	.	Parent=Os09t0557400-01
Chr09	irgsp1_rep	three_prime_UTR	22152690	22153056	.	-	.	Parent=Os09t0557400-01
Chr09	irgsp1_rep	mRNA	22156928	22159600	.	-	.	ID=Os09t0557500-01;Name=Os09t0557500-01;Locus_id=Os09g0557500;CGSNL Gene Symbol=PUP5;CGSNL Gene Name=PURINE PERMEASE 5;Oryzabase Gene Symbol Synonym(s)=OsPUP5;Oryzabase Gene Name Synonym(s)=purine permease 5%2C PUP-type cytokinin transporter 5;Note=Similar to ATPUP5.;Transcript_evidence=AK059161 (DDBJ%2C Best hit),AK071266 (DDBJ%2C Best hit);ORF_evidence=NP_001151039.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620),Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=001-023-D06,J023086J23;Oryzabase=15006;TENOR=Os09t0557500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	22159544	22159600	.	-	.	Parent=Os09t0557500-01
Chr09	irgsp1_rep	CDS	22159465	22159543	.	-	0	Parent=Os09t0557500-01
Chr09	irgsp1_rep	CDS	22156995	22158082	.	-	2	Parent=Os09t0557500-01
Chr09	irgsp1_rep	three_prime_UTR	22156928	22156994	.	-	.	Parent=Os09t0557500-01
Chr09	irgsp1_rep	mRNA	22160463	22160764	.	-	.	ID=Os09t0557600-01;Name=Os09t0557600-01;Locus_id=Os09g0557600;Note=Non-protein coding transcript.;Transcript_evidence=AK058533 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-017-A10;TENOR=Os09t0557600-01
Chr09	irgsp1_rep	exon	22160463	22160764	.	-	.	Parent=Os09t0557600-01
Chr09	irgsp1_rep	mRNA	22160877	22163555	.	-	.	ID=Os09t0557700-00;Name=Os09t0557700-00;Locus_id=Os09g0557700;Note=DOMON domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_200294.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=CytoChrome b561%2C eukaryote (IPR004877),DOMON domain (IPR005018),CytoChrome b561/ferric reductase transmembrane (IPR006593);TENOR=Os09t0557700-00;KEGG=Os09t0557700-00
Chr09	irgsp1_rep	CDS	22160877	22163555	.	-	0	Parent=Os09t0557700-00
Chr09	irgsp1_rep	mRNA	22168447	22171513	.	+	.	ID=Os09t0557800-01;Name=Os09t0557800-01;Locus_id=Os09g0557800;Note=Similar to transmembrane 9 superfamily protein member 4.;Transcript_evidence=AK071848 (DDBJ%2C Best hit),AK121320 (DDBJ%2C Best hit);ORF_evidence=NP_001151787.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Nonaspanin (TM9SF) (IPR004240);NIAS_FLcDNA=J023121L02,J023114C04;TENOR=Os09t0557800-01
Chr09	irgsp1_rep	five_prime_UTR	22168447	22168538	.	+	.	Parent=Os09t0557800-01
Chr09	irgsp1_rep	CDS	22168539	22168676	.	+	0	Parent=Os09t0557800-01
Chr09	irgsp1_rep	CDS	22169755	22169919	.	+	0	Parent=Os09t0557800-01
Chr09	irgsp1_rep	CDS	22170014	22170123	.	+	0	Parent=Os09t0557800-01
Chr09	irgsp1_rep	CDS	22170195	22170297	.	+	1	Parent=Os09t0557800-01
Chr09	irgsp1_rep	CDS	22170391	22170503	.	+	0	Parent=Os09t0557800-01
Chr09	irgsp1_rep	CDS	22170597	22170750	.	+	1	Parent=Os09t0557800-01
Chr09	irgsp1_rep	CDS	22170869	22171513	.	+	0	Parent=Os09t0557800-01
Chr09	irgsp1_rep	mRNA	22172847	22174402	.	+	.	ID=Os09t0557900-01;Name=Os09t0557900-01;Locus_id=Os09g0557900;CGSNL Gene Symbol=ENODL21;CGSNL Gene Name=EARLY NODULIN LIKE PROTEIN 21;Oryzabase Gene Symbol Synonym(s)=OsENODL21;Oryzabase Gene Name Synonym(s)=early nodulin-like protein 21;Note=Similar to Protein phosphatase 2C gamma isoform (EC 3.1.3.16) (PP2C-gamma) (Protein phosphatase magnesium-dependent 1 gamma) (Protein phosphatase 1C) (Fibroblast growth factor inducible protein 13) (FIN13).;Transcript_evidence=AK108807 (DDBJ%2C Best hit);ORF_evidence=NP_001149513.1 (RefSeq);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);NIAS_FLcDNA=002-151-D03;Oryzabase=9746;Expression=AK108807;TENOR=Os09t0557900-01;KEGG=Os09t0557900-01 (EC:3.1.3.16)
Chr09	irgsp1_rep	five_prime_UTR	22172847	22172930	.	+	.	Parent=Os09t0557900-01
Chr09	irgsp1_rep	CDS	22172931	22173090	.	+	0	Parent=Os09t0557900-01
Chr09	irgsp1_rep	CDS	22173182	22173528	.	+	2	Parent=Os09t0557900-01
Chr09	irgsp1_rep	three_prime_UTR	22173529	22174402	.	+	.	Parent=Os09t0557900-01
Chr09	irgsp1_rep	mRNA	22172876	22173660	.	+	.	ID=Os09t0557900-02;Name=Os09t0557900-02;Locus_id=Os09g0557900;CGSNL Gene Symbol=ENODL21;CGSNL Gene Name=EARLY NODULIN LIKE PROTEIN 21;Oryzabase Gene Symbol Synonym(s)=OsENODL21;Oryzabase Gene Name Synonym(s)=early nodulin-like protein 21;Note=Similar to Protein phosphatase 2C gamma isoform (EC 3.1.3.16) (PP2C-gamma) (Protein phosphatase magnesium-dependent 1 gamma) (Protein phosphatase 1C) (Fibroblast growth factor inducible protein 13) (FIN13).;Transcript_evidence=AK107999 (DDBJ%2C Best hit);ORF_evidence=NP_001149513.1 (RefSeq);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);NIAS_FLcDNA=002-135-G04;Oryzabase=9746;Expression=AK107999;TENOR=Os09t0557900-02;KEGG=Os09t0557900-02 (EC:3.1.3.16)
Chr09	irgsp1_rep	five_prime_UTR	22172876	22172930	.	+	.	Parent=Os09t0557900-02
Chr09	irgsp1_rep	CDS	22172931	22173090	.	+	0	Parent=Os09t0557900-02
Chr09	irgsp1_rep	CDS	22173182	22173528	.	+	2	Parent=Os09t0557900-02
Chr09	irgsp1_rep	three_prime_UTR	22173529	22173660	.	+	.	Parent=Os09t0557900-02
Chr09	irgsp1_rep	mRNA	22173736	22178247	.	-	.	ID=Os09t0558000-01;Name=Os09t0558000-01;Locus_id=Os09g0558000;Oryzabase Gene Symbol Synonym(s)=OsPP2C70%2C PP2C70%2C OsPP110;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C70%2C protein phosphatase 2C 70%2C protein phosphatase 110;Note=Similar to Protein phosphatase type-2C.;Transcript_evidence=AK111778 (DDBJ%2C Best hit);ORF_evidence=E4MXW7 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J023081L07;Oryzabase=17942;Expression=AK111778;TENOR=Os09t0558000-01;KEGG=Os09t0558000-01 (EC:3.1.3.16)
Chr09	irgsp1_rep	five_prime_UTR	22178034	22178247	.	-	.	Parent=Os09t0558000-01
Chr09	irgsp1_rep	five_prime_UTR	22177844	22177877	.	-	.	Parent=Os09t0558000-01
Chr09	irgsp1_rep	CDS	22177727	22177843	.	-	0	Parent=Os09t0558000-01
Chr09	irgsp1_rep	CDS	22177184	22177247	.	-	0	Parent=Os09t0558000-01
Chr09	irgsp1_rep	CDS	22176505	22176613	.	-	2	Parent=Os09t0558000-01
Chr09	irgsp1_rep	CDS	22176254	22176404	.	-	1	Parent=Os09t0558000-01
Chr09	irgsp1_rep	CDS	22175443	22175568	.	-	0	Parent=Os09t0558000-01
Chr09	irgsp1_rep	CDS	22175235	22175358	.	-	0	Parent=Os09t0558000-01
Chr09	irgsp1_rep	CDS	22175076	22175152	.	-	2	Parent=Os09t0558000-01
Chr09	irgsp1_rep	CDS	22174941	22174993	.	-	0	Parent=Os09t0558000-01
Chr09	irgsp1_rep	CDS	22174385	22174439	.	-	1	Parent=Os09t0558000-01
Chr09	irgsp1_rep	CDS	22174091	22174266	.	-	0	Parent=Os09t0558000-01
Chr09	irgsp1_rep	CDS	22174001	22174007	.	-	1	Parent=Os09t0558000-01
Chr09	irgsp1_rep	three_prime_UTR	22173736	22174000	.	-	.	Parent=Os09t0558000-01
Chr09	irgsp1_rep	mRNA	22181714	22182861	.	-	.	ID=Os09t0558050-00;Name=Os09t0558050-00;Locus_id=Os09g0558050;Note=Non-protein coding transcript.;Transcript_evidence=BT019258 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0558050-00
Chr09	irgsp1_rep	exon	22182731	22182861	.	-	.	Parent=Os09t0558050-00
Chr09	irgsp1_rep	exon	22181714	22181849	.	-	.	Parent=Os09t0558050-00
Chr09	irgsp1_rep	mRNA	22181713	22183208	.	+	.	ID=Os09t0558100-01;Name=Os09t0558100-01;Locus_id=Os09g0558100;Oryzabase Gene Symbol Synonym(s)=OsRCI2-11%2C OSR8%2C osr8;Oryzabase Gene Name Synonym(s)=rare cold-inducible 2-11;Note=Similar to Low-temperature induced protein lt101.2.;Transcript_evidence=AK062410 (DDBJ%2C Best hit);ORF_evidence=Q9LRI7 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Proteolipid membrane potential modulator (IPR000612);NIAS_FLcDNA=001-102-E12;Oryzabase=18174;Expression=AK062410;TENOR=Os09t0558100-01;KEGG=Os09t0558100-01
Chr09	irgsp1_rep	five_prime_UTR	22181713	22181763	.	+	.	Parent=Os09t0558100-01
Chr09	irgsp1_rep	CDS	22181764	22181856	.	+	0	Parent=Os09t0558100-01
Chr09	irgsp1_rep	CDS	22182733	22182858	.	+	0	Parent=Os09t0558100-01
Chr09	irgsp1_rep	three_prime_UTR	22182859	22183208	.	+	.	Parent=Os09t0558100-01
Chr09	irgsp1_rep	mRNA	22188092	22191579	.	+	.	ID=Os09t0558200-01;Name=Os09t0558200-01;Locus_id=Os09g0558200;CGSNL Gene Symbol=MSL34;CGSNL Gene Name=MYB/SANT-LIKE 34;Oryzabase Gene Symbol Synonym(s)=OsMSL34%2C OsMSL34a%2C OsMSL34b;Oryzabase Gene Name Synonym(s)=Myb/SANT-LIKE 34;Note=Homeodomain-like containing protein.;Transcript_evidence=AK103673 (DDBJ%2C Best hit);ORF_evidence=A3C1F6 (UniProt);GO=Molecular Function: DNA binding (GO:0003677);InterPro=SANT domain%2C DNA binding (IPR001005);NIAS_FLcDNA=J033136A07;Oryzabase=22941;Expression=AK103673;TENOR=Os09t0558200-01;KEGG=Os09t0558200-01
Chr09	irgsp1_rep	five_prime_UTR	22188092	22189058	.	+	.	Parent=Os09t0558200-01
Chr09	irgsp1_rep	CDS	22189059	22190058	.	+	0	Parent=Os09t0558200-01
Chr09	irgsp1_rep	CDS	22191376	22191386	.	+	2	Parent=Os09t0558200-01
Chr09	irgsp1_rep	three_prime_UTR	22191387	22191579	.	+	.	Parent=Os09t0558200-01
Chr09	irgsp1_rep	mRNA	22188469	22191618	.	+	.	ID=Os09t0558200-02;Name=Os09t0558200-02;Locus_id=Os09g0558200;CGSNL Gene Symbol=MSL34;CGSNL Gene Name=MYB/SANT-LIKE 34;Oryzabase Gene Symbol Synonym(s)=OsMSL34%2C OsMSL34a%2C OsMSL34b;Oryzabase Gene Name Synonym(s)=Myb/SANT-LIKE 34;Note=Homeodomain-like containing protein.;Transcript_evidence=AK068834 (DDBJ%2C Best hit);ORF_evidence=A3C1F6 (UniProt);GO=Molecular Function: DNA binding (GO:0003677);InterPro=SANT domain%2C DNA binding (IPR001005);NIAS_FLcDNA=J013159M18;Oryzabase=22941;Expression=AK068834;TENOR=Os09t0558200-02;KEGG=Os09t0558200-02
Chr09	irgsp1_rep	five_prime_UTR	22188469	22189058	.	+	.	Parent=Os09t0558200-02
Chr09	irgsp1_rep	CDS	22189059	22190058	.	+	0	Parent=Os09t0558200-02
Chr09	irgsp1_rep	CDS	22191376	22191386	.	+	2	Parent=Os09t0558200-02
Chr09	irgsp1_rep	three_prime_UTR	22191387	22191618	.	+	.	Parent=Os09t0558200-02
Chr09	irgsp1_rep	mRNA	22189081	22191645	.	-	.	ID=Os09t0558250-00;Name=Os09t0558250-00;Locus_id=Os09g0558250;Note=Hypothetical protein.;Transcript_evidence=tplb0043c08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0558250-00
Chr09	irgsp1_rep	five_prime_UTR	22191480	22191645	.	-	.	Parent=Os09t0558250-00
Chr09	irgsp1_rep	five_prime_UTR	22189499	22190195	.	-	.	Parent=Os09t0558250-00
Chr09	irgsp1_rep	CDS	22189081	22189498	.	-	0	Parent=Os09t0558250-00
Chr09	irgsp1_rep	mRNA	22192750	22197181	.	+	.	ID=Os09t0558300-01;Name=Os09t0558300-01;Locus_id=Os09g0558300;RAP-DB Gene Symbol Synonym(s)=OsCNGC9%2C CDS1;RAP-DB Gene Name Synonym(s)=cyclic nucleotide-gated channel 9%2C CELL DEATH and SUSCEPTIBLE to BLAST 1;CGSNL Gene Symbol=CDS1;CGSNL Gene Name=CELL DEATH AND SUSCEPTIBLE TO BLAST 1;Oryzabase Gene Symbol Synonym(s)=OsCNGC15%2C CNGC15%2C OsCNGC9%2C CNGC9%2C OsCDS1;Oryzabase Gene Name Synonym(s)=Cyclic nucleotide gated channel 15%2C Cyclic nucleotide-gated ion channel 9;Note=Cyclic nucleotide-gated channel protein%2C Regulation of resistance to rice blast disease;Transcript_evidence=AK102179;ORF_evidence=Q653S0;GO=Biological Process: ion transport (GO:0006811),Biological Process: transmembrane transport (GO:0055085),Molecular Function: ion channel activity (GO:0005216),Cellular Component: membrane (GO:0016020);InterPro=Cyclic nucleotide-binding-like (IPR018490),RmlC-like jelly roll fold (IPR014710),Ion transport domain (IPR005821),Cyclic nucleotide-binding domain (IPR000595);NIAS_FLcDNA=J033086L20;Manual Curation=February 18%2C 2020;Literature_PMID=31444468;Oryzabase=15488;Expression=AK102179;TENOR=Os09t0558300-01;KEGG=Os09t0558300-01;Subcellular location=plasma membrane (GO:0005886)
Chr09	irgsp1_rep	five_prime_UTR	22192750	22192915	.	+	.	Parent=Os09t0558300-01
Chr09	irgsp1_rep	CDS	22192916	22192971	.	+	0	Parent=Os09t0558300-01
Chr09	irgsp1_rep	CDS	22193304	22193814	.	+	1	Parent=Os09t0558300-01
Chr09	irgsp1_rep	CDS	22194414	22194626	.	+	0	Parent=Os09t0558300-01
Chr09	irgsp1_rep	CDS	22194964	22195268	.	+	0	Parent=Os09t0558300-01
Chr09	irgsp1_rep	CDS	22195478	22195589	.	+	1	Parent=Os09t0558300-01
Chr09	irgsp1_rep	CDS	22195907	22196143	.	+	0	Parent=Os09t0558300-01
Chr09	irgsp1_rep	CDS	22196326	22197033	.	+	0	Parent=Os09t0558300-01
Chr09	irgsp1_rep	three_prime_UTR	22197034	22197181	.	+	.	Parent=Os09t0558300-01
Chr09	irgsp1_rep	mRNA	22193438	22197181	.	+	.	ID=Os09t0558300-02;Name=Os09t0558300-02;Locus_id=Os09g0558300;CGSNL Gene Symbol=CDS1;CGSNL Gene Name=CELL DEATH AND SUSCEPTIBLE TO BLAST 1;Oryzabase Gene Symbol Synonym(s)=OsCNGC15%2C CNGC15%2C OsCNGC9%2C CNGC9%2C OsCDS1;Oryzabase Gene Name Synonym(s)=Cyclic nucleotide gated channel 15%2C Cyclic nucleotide-gated ion channel 9;Note=Similar to cyclic nucleotide-gated ion channel 14.;Transcript_evidence=AK059452 (DDBJ%2C Best hit);ORF_evidence=B6UFI6 (UniProt);GO=Biological Process: ion transport (GO:0006811),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: ion channel activity (GO:0005216);InterPro=Cyclic nucleotide-binding domain (IPR000595),Ion transport (IPR005821),RmlC-like jelly roll fold (IPR014710),Cyclic nucleotide-binding-like (IPR018490);NIAS_FLcDNA=001-028-B08;Oryzabase=15488;Expression=AK059452;TENOR=Os09t0558300-02;KEGG=Os09t0558300-02
Chr09	irgsp1_rep	five_prime_UTR	22193438	22193439	.	+	.	Parent=Os09t0558300-02
Chr09	irgsp1_rep	CDS	22193440	22193814	.	+	0	Parent=Os09t0558300-02
Chr09	irgsp1_rep	CDS	22194414	22194626	.	+	0	Parent=Os09t0558300-02
Chr09	irgsp1_rep	CDS	22194964	22195268	.	+	0	Parent=Os09t0558300-02
Chr09	irgsp1_rep	CDS	22195478	22195589	.	+	1	Parent=Os09t0558300-02
Chr09	irgsp1_rep	CDS	22195907	22196143	.	+	0	Parent=Os09t0558300-02
Chr09	irgsp1_rep	CDS	22196326	22197033	.	+	0	Parent=Os09t0558300-02
Chr09	irgsp1_rep	three_prime_UTR	22197034	22197181	.	+	.	Parent=Os09t0558300-02
Chr09	irgsp1_rep	mRNA	22193479	22196846	.	-	.	ID=Os09t0558450-00;Name=Os09t0558450-00;Locus_id=Os09g0558450;Note=Non-protein coding transcript.;Transcript_evidence=tplb0048d05 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os09t0558450-00
Chr09	irgsp1_rep	exon	22196325	22196846	.	-	.	Parent=Os09t0558450-00
Chr09	irgsp1_rep	exon	22195839	22196142	.	-	.	Parent=Os09t0558450-00
Chr09	irgsp1_rep	exon	22194982	22195323	.	-	.	Parent=Os09t0558450-00
Chr09	irgsp1_rep	exon	22194402	22194636	.	-	.	Parent=Os09t0558450-00
Chr09	irgsp1_rep	exon	22193479	22193805	.	-	.	Parent=Os09t0558450-00
Chr09	irgsp1_rep	mRNA	22202108	22204167	.	+	.	ID=Os09t0558600-01;Name=Os09t0558600-01;Locus_id=Os09g0558600;Note=Domain of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK064751 (DDBJ%2C Best hit);ORF_evidence=Q653T0 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=002-120-F08;TENOR=Os09t0558600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	22202108	22202239	.	+	.	Parent=Os09t0558600-01
Chr09	irgsp1_rep	CDS	22202240	22203320	.	+	0	Parent=Os09t0558600-01
Chr09	irgsp1_rep	CDS	22203964	22204103	.	+	2	Parent=Os09t0558600-01
Chr09	irgsp1_rep	three_prime_UTR	22204104	22204167	.	+	.	Parent=Os09t0558600-01
Chr09	irgsp1_rep	mRNA	22207648	22208103	.	-	.	ID=Os09t0558800-01;Name=Os09t0558800-01;Locus_id=Os09g0558800;Note=Non-protein coding transcript.;Transcript_evidence=AK288524 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090044C23;TENOR=Os09t0558800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	exon	22207648	22208103	.	-	.	Parent=Os09t0558800-01
Chr09	irgsp1_rep	mRNA	22207975	22208505	.	+	.	ID=Os09t0558850-00;Name=Os09t0558850-00;Locus_id=Os09g0558850;Note=Similar to ZFP1 (ZINC-FINGER PROTEIN 1)%3B nucleic acid binding / transcription factor/ zinc ion binding.;Transcript_evidence=EU948609 (DDBJ);ORF_evidence=NP_178188.1 (RefSeq);TENOR=Os09t0558850-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	22207975	22208505	.	+	0	Parent=Os09t0558850-00
Chr09	irgsp1_rep	mRNA	22212492	22218155	.	-	.	ID=Os09t0558900-01;Name=Os09t0558900-01;Locus_id=Os09g0558900;Oryzabase Gene Symbol Synonym(s)=OsCPR3;Oryzabase Gene Name Synonym(s)=cytoChrome P450 reductase 3%2C NADPH-cytoChrome P450 reductase 3;Note=Similar to NADPH-cytoChrome P450 reductase (Fragment).;Transcript_evidence=AK102060 (DDBJ%2C Best hit);ORF_evidence=Q8VX49 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: NADPH-hemoprotein reductase activity (GO:0003958),Molecular Function: iron ion binding (GO:0005506),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Flavodoxin (IPR001094),Oxidoreductase FAD/NAD(P)-binding (IPR001433),Flavoprotein pyridine nucleotide cytoChrome reductase (IPR001709),FAD-binding%2C type 1 (IPR003097),Flavodoxin/nitric oxide synthase (IPR008254),Ferredoxin reductase-type FAD-binding domain (IPR017927),Riboflavin synthase-like beta-barrel (IPR017938),NADPH-cytoChrome p450 reductase%2C FAD-binding%2C alpha-helical domain-3 (IPR023173),NADPH-cytoChrome P450 reductase (IPR023208);NIAS_FLcDNA=J033082D09;Oryzabase=12132;Expression=AK102060;TENOR=Os09t0558900-01;KEGG=Os09t0558900-01 (EC:1.6.2.4)
Chr09	irgsp1_rep	five_prime_UTR	22218081	22218155	.	-	.	Parent=Os09t0558900-01
Chr09	irgsp1_rep	CDS	22217718	22218080	.	-	0	Parent=Os09t0558900-01
Chr09	irgsp1_rep	CDS	22217578	22217637	.	-	0	Parent=Os09t0558900-01
Chr09	irgsp1_rep	CDS	22217401	22217477	.	-	0	Parent=Os09t0558900-01
Chr09	irgsp1_rep	CDS	22217221	22217278	.	-	1	Parent=Os09t0558900-01
Chr09	irgsp1_rep	CDS	22217047	22217130	.	-	0	Parent=Os09t0558900-01
Chr09	irgsp1_rep	CDS	22216929	22216965	.	-	0	Parent=Os09t0558900-01
Chr09	irgsp1_rep	CDS	22216330	22216399	.	-	2	Parent=Os09t0558900-01
Chr09	irgsp1_rep	CDS	22215981	22216175	.	-	1	Parent=Os09t0558900-01
Chr09	irgsp1_rep	CDS	22215807	22215899	.	-	1	Parent=Os09t0558900-01
Chr09	irgsp1_rep	CDS	22215468	22215696	.	-	1	Parent=Os09t0558900-01
Chr09	irgsp1_rep	CDS	22215292	22215375	.	-	0	Parent=Os09t0558900-01
Chr09	irgsp1_rep	CDS	22215072	22215223	.	-	0	Parent=Os09t0558900-01
Chr09	irgsp1_rep	CDS	22214898	22214994	.	-	1	Parent=Os09t0558900-01
Chr09	irgsp1_rep	CDS	22213891	22214040	.	-	0	Parent=Os09t0558900-01
Chr09	irgsp1_rep	CDS	22213735	22213812	.	-	0	Parent=Os09t0558900-01
Chr09	irgsp1_rep	CDS	22213304	22213426	.	-	0	Parent=Os09t0558900-01
Chr09	irgsp1_rep	CDS	22213108	22213221	.	-	0	Parent=Os09t0558900-01
Chr09	irgsp1_rep	CDS	22212751	22212831	.	-	0	Parent=Os09t0558900-01
Chr09	irgsp1_rep	three_prime_UTR	22212492	22212750	.	-	.	Parent=Os09t0558900-01
Chr09	irgsp1_rep	mRNA	22220410	22221987	.	-	.	ID=Os09t0559000-00;Name=Os09t0559000-00;Locus_id=Os09g0559000;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001063915.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C CCHC-type (IPR001878),Zinc finger%2C C6HC-type (IPR002867),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907);TENOR=Os09t0559000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	22220410	22221987	.	-	0	Parent=Os09t0559000-00
Chr09	irgsp1_rep	mRNA	22220426	22221960	.	+	.	ID=Os09t0559050-00;Name=Os09t0559050-00;Locus_id=Os09g0559050;Note=Hypothetical gene.;Transcript_evidence=EU972919 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0559050-00;KEGG=Os09t0559050-00
Chr09	irgsp1_rep	five_prime_UTR	22220426	22220427	.	+	.	Parent=Os09t0559050-00
Chr09	irgsp1_rep	CDS	22220428	22221828	.	+	0	Parent=Os09t0559050-00
Chr09	irgsp1_rep	three_prime_UTR	22221829	22221960	.	+	.	Parent=Os09t0559050-00
Chr09	irgsp1_rep	mRNA	22223086	22224816	.	-	.	ID=Os09t0559100-00;Name=Os09t0559100-00;Locus_id=Os09g0559100;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK374953 (DDBJ);ORF_evidence=NP_001063916.1 (RefSeq);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083);TENOR=Os09t0559100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	22224223	22224816	.	-	0	Parent=Os09t0559100-00
Chr09	irgsp1_rep	three_prime_UTR	22223332	22224222	.	-	.	Parent=Os09t0559100-00
Chr09	irgsp1_rep	three_prime_UTR	22223086	22223270	.	-	.	Parent=Os09t0559100-00
Chr09	irgsp1_rep	mRNA	22223150	22224809	.	+	.	ID=Os09t0559150-00;Name=Os09t0559150-00;Locus_id=Os09g0559150;Note=Hypothetical gene.;Transcript_evidence=EU972919 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0559150-00
Chr09	irgsp1_rep	five_prime_UTR	22223150	22223252	.	+	.	Parent=Os09t0559150-00
Chr09	irgsp1_rep	five_prime_UTR	22223324	22223859	.	+	.	Parent=Os09t0559150-00
Chr09	irgsp1_rep	CDS	22223860	22224809	.	+	0	Parent=Os09t0559150-00
Chr09	irgsp1_rep	mRNA	22225227	22226814	.	-	.	ID=Os09t0559200-01;Name=Os09t0559200-01;Locus_id=Os09g0559200;Note=RuvA domain 2-like containing protein.;Transcript_evidence=AK109603 (DDBJ%2C Best hit);ORF_evidence=B8BEE3 (UniProt);NIAS_FLcDNA=002-137-E12;Expression=AK109603;TENOR=Os09t0559200-01;KEGG=Os09t0559200-01
Chr09	irgsp1_rep	five_prime_UTR	22226763	22226814	.	-	.	Parent=Os09t0559200-01
Chr09	irgsp1_rep	CDS	22226115	22226762	.	-	0	Parent=Os09t0559200-01
Chr09	irgsp1_rep	CDS	22225384	22226007	.	-	0	Parent=Os09t0559200-01
Chr09	irgsp1_rep	three_prime_UTR	22225227	22225383	.	-	.	Parent=Os09t0559200-01
Chr09	irgsp1_rep	mRNA	22230293	22231845	.	-	.	ID=Os09t0559500-01;Name=Os09t0559500-01;Locus_id=Os09g0559500;Note=Protein of unknown function DUF594 domain containing protein.;Transcript_evidence=AK062292 (DDBJ%2C Best hit);ORF_evidence=A3C1G4 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);NIAS_FLcDNA=001-100-E12;TENOR=Os09t0559500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	22231844	22231845	.	-	.	Parent=Os09t0559500-01
Chr09	irgsp1_rep	CDS	22230479	22231843	.	-	0	Parent=Os09t0559500-01
Chr09	irgsp1_rep	three_prime_UTR	22230293	22230478	.	-	.	Parent=Os09t0559500-01
Chr09	irgsp1_rep	mRNA	22235366	22235951	.	+	.	ID=Os09t0559600-01;Name=Os09t0559600-01;Locus_id=Os09g0559600;Note=Thioredoxin domain 2 containing protein.;Transcript_evidence=AK109214 (DDBJ%2C Best hit);ORF_evidence=A3C1G5 (UniProt);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Thioredoxin (IPR005746),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766);NIAS_FLcDNA=002-156-D08;Expression=AK109214;TENOR=Os09t0559600-01;KEGG=Os09t0559600-01
Chr09	irgsp1_rep	five_prime_UTR	22235366	22235488	.	+	.	Parent=Os09t0559600-01
Chr09	irgsp1_rep	CDS	22235489	22235797	.	+	0	Parent=Os09t0559600-01
Chr09	irgsp1_rep	three_prime_UTR	22235798	22235951	.	+	.	Parent=Os09t0559600-01
Chr09	irgsp1_rep	mRNA	22239443	22243486	.	+	.	ID=Os09t0559800-01;Name=Os09t0559800-01;Locus_id=Os09g0559800;Note=Similar to Transporter-like protein.;Transcript_evidence=AK071542 (DDBJ%2C Best hit);ORF_evidence=Q25AI7 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857);InterPro=General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J023100A19;Expression=AK071542;TENOR=Os09t0559800-01;KEGG=Os09t0559800-01
Chr09	irgsp1_rep	five_prime_UTR	22239443	22239553	.	+	.	Parent=Os09t0559800-01
Chr09	irgsp1_rep	CDS	22240356	22240622	.	+	0	Parent=Os09t0559800-01
Chr09	irgsp1_rep	CDS	22241395	22241634	.	+	0	Parent=Os09t0559800-01
Chr09	irgsp1_rep	CDS	22242058	22242595	.	+	0	Parent=Os09t0559800-01
Chr09	irgsp1_rep	CDS	22242681	22242883	.	+	2	Parent=Os09t0559800-01
Chr09	irgsp1_rep	CDS	22242996	22243220	.	+	0	Parent=Os09t0559800-01
Chr09	irgsp1_rep	three_prime_UTR	22243221	22243486	.	+	.	Parent=Os09t0559800-01
Chr09	irgsp1_rep	mRNA	22243207	22243486	.	+	.	ID=Os09t0559800-02;Name=Os09t0559800-02;Locus_id=Os09g0559800;Note=Non-protein coding transcript.;Transcript_evidence=AK121836 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J033100J18;TENOR=Os09t0559800-02
Chr09	irgsp1_rep	exon	22243207	22243486	.	+	.	Parent=Os09t0559800-02
Chr09	irgsp1_rep	mRNA	22243903	22248927	.	+	.	ID=Os09t0559900-01;Name=Os09t0559900-01;Locus_id=Os09g0559900;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK111842 (DDBJ%2C Best hit);ORF_evidence=XP_002889223.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023140K06;Expression=AK111842;TENOR=Os09t0559900-01;KEGG=Os09t0559900-01
Chr09	irgsp1_rep	five_prime_UTR	22243903	22243911	.	+	.	Parent=Os09t0559900-01
Chr09	irgsp1_rep	CDS	22243912	22244083	.	+	0	Parent=Os09t0559900-01
Chr09	irgsp1_rep	CDS	22244214	22244352	.	+	2	Parent=Os09t0559900-01
Chr09	irgsp1_rep	CDS	22244514	22244585	.	+	1	Parent=Os09t0559900-01
Chr09	irgsp1_rep	CDS	22244664	22244729	.	+	1	Parent=Os09t0559900-01
Chr09	irgsp1_rep	CDS	22244843	22244914	.	+	1	Parent=Os09t0559900-01
Chr09	irgsp1_rep	CDS	22245039	22245110	.	+	1	Parent=Os09t0559900-01
Chr09	irgsp1_rep	CDS	22245287	22245358	.	+	1	Parent=Os09t0559900-01
Chr09	irgsp1_rep	CDS	22245450	22245515	.	+	1	Parent=Os09t0559900-01
Chr09	irgsp1_rep	CDS	22245804	22245869	.	+	1	Parent=Os09t0559900-01
Chr09	irgsp1_rep	CDS	22245946	22246164	.	+	1	Parent=Os09t0559900-01
Chr09	irgsp1_rep	CDS	22246422	22246647	.	+	1	Parent=Os09t0559900-01
Chr09	irgsp1_rep	CDS	22246906	22247171	.	+	0	Parent=Os09t0559900-01
Chr09	irgsp1_rep	CDS	22247272	22247392	.	+	1	Parent=Os09t0559900-01
Chr09	irgsp1_rep	CDS	22247487	22247623	.	+	0	Parent=Os09t0559900-01
Chr09	irgsp1_rep	CDS	22247755	22247911	.	+	1	Parent=Os09t0559900-01
Chr09	irgsp1_rep	CDS	22248448	22248582	.	+	0	Parent=Os09t0559900-01
Chr09	irgsp1_rep	three_prime_UTR	22248583	22248927	.	+	.	Parent=Os09t0559900-01
Chr09	irgsp1_rep	mRNA	22248966	22254215	.	-	.	ID=Os09t0560000-01;Name=Os09t0560000-01;Locus_id=Os09g0560000;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK073825 (DDBJ%2C Best hit);ORF_evidence=A2Z414 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033068E01;Expression=AK073825;TENOR=Os09t0560000-01;KEGG=Os09t0560000-01
Chr09	irgsp1_rep	five_prime_UTR	22254131	22254215	.	-	.	Parent=Os09t0560000-01
Chr09	irgsp1_rep	five_prime_UTR	22253327	22253499	.	-	.	Parent=Os09t0560000-01
Chr09	irgsp1_rep	CDS	22252703	22253326	.	-	0	Parent=Os09t0560000-01
Chr09	irgsp1_rep	CDS	22252013	22252207	.	-	0	Parent=Os09t0560000-01
Chr09	irgsp1_rep	CDS	22251836	22251938	.	-	0	Parent=Os09t0560000-01
Chr09	irgsp1_rep	CDS	22250771	22251414	.	-	2	Parent=Os09t0560000-01
Chr09	irgsp1_rep	CDS	22249661	22250356	.	-	0	Parent=Os09t0560000-01
Chr09	irgsp1_rep	CDS	22249381	22249562	.	-	0	Parent=Os09t0560000-01
Chr09	irgsp1_rep	CDS	22249240	22249297	.	-	1	Parent=Os09t0560000-01
Chr09	irgsp1_rep	three_prime_UTR	22248966	22249239	.	-	.	Parent=Os09t0560000-01
Chr09	irgsp1_rep	mRNA	22256035	22259743	.	+	.	ID=Os09t0560100-00;Name=Os09t0560100-00;Locus_id=Os09g0560100;Note=Hypothetical conserved gene.;Transcript_evidence=tplb0024o12 (Wheat FLcDNA);ORF_evidence=E1UHI8 (UniProt);InterPro=Mitochodrial transcription termination factor-related (IPR003690);TENOR=Os09t0560100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	22256035	22256046	.	+	.	Parent=Os09t0560100-00
Chr09	irgsp1_rep	CDS	22256047	22256640	.	+	0	Parent=Os09t0560100-00
Chr09	irgsp1_rep	CDS	22257222	22257359	.	+	0	Parent=Os09t0560100-00
Chr09	irgsp1_rep	CDS	22257445	22257690	.	+	0	Parent=Os09t0560100-00
Chr09	irgsp1_rep	CDS	22257802	22257915	.	+	0	Parent=Os09t0560100-00
Chr09	irgsp1_rep	CDS	22258028	22258210	.	+	0	Parent=Os09t0560100-00
Chr09	irgsp1_rep	CDS	22258321	22258538	.	+	0	Parent=Os09t0560100-00
Chr09	irgsp1_rep	CDS	22259277	22259622	.	+	1	Parent=Os09t0560100-00
Chr09	irgsp1_rep	three_prime_UTR	22259623	22259743	.	+	.	Parent=Os09t0560100-00
Chr09	irgsp1_rep	mRNA	22259974	22260398	.	-	.	ID=Os09t0560150-00;Name=Os09t0560150-00;Locus_id=Os09g0560150;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os09t0560150-00;KEGG=Os09t0560150-00
Chr09	irgsp1_rep	CDS	22260332	22260398	.	-	0	Parent=Os09t0560150-00
Chr09	irgsp1_rep	CDS	22259974	22260182	.	-	2	Parent=Os09t0560150-00
Chr09	irgsp1_rep	mRNA	22260384	22262115	.	+	.	ID=Os09t0560200-01;Name=Os09t0560200-01;Locus_id=Os09g0560200;Oryzabase Gene Name Synonym(s)=proteasome;Note=Similar to 26S protease regulatory subunit 6B (MIP224) (MB67 interacting protein) (TAT-binding protein-7) (TBP-7). Splice isoform 2.;Transcript_evidence=AK106791 (DDBJ%2C Best hit);ORF_evidence=NP_200637.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);NIAS_FLcDNA=002-116-A07;Oryzabase=16768;Expression=AK106791;TENOR=Os09t0560200-01;KEGG=Os09t0560200-01
Chr09	irgsp1_rep	five_prime_UTR	22260384	22260607	.	+	.	Parent=Os09t0560200-01
Chr09	irgsp1_rep	CDS	22260608	22261954	.	+	0	Parent=Os09t0560200-01
Chr09	irgsp1_rep	three_prime_UTR	22261955	22262115	.	+	.	Parent=Os09t0560200-01
Chr09	irgsp1_rep	mRNA	22262209	22264375	.	-	.	ID=Os09t0560300-01;Name=Os09t0560300-01;Locus_id=Os09g0560300;Note=Conserved hypothetical protein.;Transcript_evidence=AK112051 (DDBJ%2C Best hit),AK099388 (DDBJ%2C Best hit);ORF_evidence=B8BEF1 (UniProt);NIAS_FLcDNA=001-104-E03,J033076P14;Expression=AK112051;TENOR=Os09t0560300-01;KEGG=Os09t0560300-01
Chr09	irgsp1_rep	five_prime_UTR	22264314	22264375	.	-	.	Parent=Os09t0560300-01
Chr09	irgsp1_rep	CDS	22264137	22264313	.	-	0	Parent=Os09t0560300-01
Chr09	irgsp1_rep	CDS	22262531	22262605	.	-	0	Parent=Os09t0560300-01
Chr09	irgsp1_rep	three_prime_UTR	22262209	22262530	.	-	.	Parent=Os09t0560300-01
Chr09	irgsp1_rep	mRNA	22265601	22268858	.	-	.	ID=Os09t0560400-01;Name=Os09t0560400-01;Locus_id=Os09g0560400;Note=Hypothetical conserved gene.;Transcript_evidence=AK287968 (DDBJ%2C Best hit);ORF_evidence=B9G519 (UniProt);NIAS_FLcDNA=J075068I21;Oryzabase=22545;TENOR=Os09t0560400-01;KEGG=Os09t0560400-01
Chr09	irgsp1_rep	five_prime_UTR	22268836	22268858	.	-	.	Parent=Os09t0560400-01
Chr09	irgsp1_rep	CDS	22268596	22268835	.	-	0	Parent=Os09t0560400-01
Chr09	irgsp1_rep	CDS	22266629	22266838	.	-	0	Parent=Os09t0560400-01
Chr09	irgsp1_rep	CDS	22265910	22266023	.	-	0	Parent=Os09t0560400-01
Chr09	irgsp1_rep	three_prime_UTR	22265601	22265909	.	-	.	Parent=Os09t0560400-01
Chr09	irgsp1_rep	mRNA	22269102	22272675	.	+	.	ID=Os09t0560450-01;Name=Os09t0560450-01;Locus_id=Os09g0560450;Note=Similar to Regulator of Chromosome condensation/beta-lactamase-inhibitor protein II.;Transcript_evidence=AK243348 (DDBJ%2C Best hit);ORF_evidence=B8BEF2 (UniProt);InterPro=Regulator of Chromosome condensation%2C RCC1 (IPR000408),Regulator of Chromosome condensation/beta-lactamase-inhibitor protein II (IPR009091);NIAS_FLcDNA=J100060B09;TENOR=Os09t0560450-01;KEGG=Os09t0560450-01
Chr09	irgsp1_rep	five_prime_UTR	22269102	22269134	.	+	.	Parent=Os09t0560450-01
Chr09	irgsp1_rep	CDS	22269135	22269625	.	+	0	Parent=Os09t0560450-01
Chr09	irgsp1_rep	CDS	22269806	22269945	.	+	1	Parent=Os09t0560450-01
Chr09	irgsp1_rep	CDS	22270106	22270300	.	+	2	Parent=Os09t0560450-01
Chr09	irgsp1_rep	CDS	22270919	22271047	.	+	2	Parent=Os09t0560450-01
Chr09	irgsp1_rep	CDS	22271458	22271613	.	+	2	Parent=Os09t0560450-01
Chr09	irgsp1_rep	CDS	22271902	22272104	.	+	2	Parent=Os09t0560450-01
Chr09	irgsp1_rep	three_prime_UTR	22272105	22272675	.	+	.	Parent=Os09t0560450-01
Chr09	irgsp1_rep	mRNA	22272962	22274888	.	+	.	ID=Os09t0560500-01;Name=Os09t0560500-01;Locus_id=Os09g0560500;Note=Dihydroneopterin aldolase family protein.;Transcript_evidence=AK071381 (DDBJ%2C Best hit);ORF_evidence=NP_001147240.1 (RefSeq);GO=Biological Process: folic acid-containing compound metabolic process (GO:0006760),Molecular Function: dihydroneopterin aldolase activity (GO:0004150);InterPro=Dihydroneopterin aldolase (IPR006156),Dihydroneopterin aldolase/epimerase domain (IPR006157);NIAS_FLcDNA=J023089I18;Expression=AK071381;TENOR=Os09t0560500-01;KEGG=Os09t0560500-01 (EC:4.1.2.25)
Chr09	irgsp1_rep	five_prime_UTR	22272962	22273082	.	+	.	Parent=Os09t0560500-01
Chr09	irgsp1_rep	five_prime_UTR	22273624	22273626	.	+	.	Parent=Os09t0560500-01
Chr09	irgsp1_rep	CDS	22273627	22273828	.	+	0	Parent=Os09t0560500-01
Chr09	irgsp1_rep	CDS	22273996	22274200	.	+	2	Parent=Os09t0560500-01
Chr09	irgsp1_rep	CDS	22274454	22274673	.	+	1	Parent=Os09t0560500-01
Chr09	irgsp1_rep	three_prime_UTR	22274674	22274888	.	+	.	Parent=Os09t0560500-01
Chr09	irgsp1_rep	mRNA	22275274	22277863	.	+	.	ID=Os09t0560600-01;Name=Os09t0560600-01;Locus_id=Os09g0560600;Note=Protein of unknown function DUF284%2C transmembrane eukaryotic family protein.;Transcript_evidence=AK070937 (DDBJ%2C Best hit);ORF_evidence=B6T6G6 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Protein of unknown function DUF284%2C transmembrane eukaryotic (IPR005045);NIAS_FLcDNA=J023068C02;Expression=AK070937;TENOR=Os09t0560600-01;KEGG=Os09t0560600-01
Chr09	irgsp1_rep	five_prime_UTR	22275274	22275342	.	+	.	Parent=Os09t0560600-01
Chr09	irgsp1_rep	five_prime_UTR	22275417	22275471	.	+	.	Parent=Os09t0560600-01
Chr09	irgsp1_rep	CDS	22275472	22275559	.	+	0	Parent=Os09t0560600-01
Chr09	irgsp1_rep	CDS	22275865	22275923	.	+	2	Parent=Os09t0560600-01
Chr09	irgsp1_rep	CDS	22276037	22276111	.	+	0	Parent=Os09t0560600-01
Chr09	irgsp1_rep	CDS	22276199	22276315	.	+	0	Parent=Os09t0560600-01
Chr09	irgsp1_rep	CDS	22276405	22276475	.	+	0	Parent=Os09t0560600-01
Chr09	irgsp1_rep	CDS	22276565	22276868	.	+	1	Parent=Os09t0560600-01
Chr09	irgsp1_rep	CDS	22277116	22277405	.	+	0	Parent=Os09t0560600-01
Chr09	irgsp1_rep	CDS	22277551	22277602	.	+	1	Parent=Os09t0560600-01
Chr09	irgsp1_rep	three_prime_UTR	22277603	22277863	.	+	.	Parent=Os09t0560600-01
Chr09	irgsp1_rep	mRNA	22278292	22281031	.	+	.	ID=Os09t0560700-01;Name=Os09t0560700-01;Locus_id=Os09g0560700;Note=Molybdenum cofactor sulfurase%2C C-terminal domain containing protein.;Transcript_evidence=AK069278 (DDBJ%2C Best hit);ORF_evidence=Q0MRQ7 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: molybdenum ion binding (GO:0030151),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Molybdenum cofactor sulfurase%2C C-terminal (IPR005302),MOSC%2C N-terminal beta barrel (IPR005303),Pyruvate kinase-like%2C insert domain (IPR011037);NIAS_FLcDNA=J023012E10;Expression=AK069278;TENOR=Os09t0560700-01;KEGG=Os09t0560700-01
Chr09	irgsp1_rep	five_prime_UTR	22278292	22278384	.	+	.	Parent=Os09t0560700-01
Chr09	irgsp1_rep	CDS	22278385	22278535	.	+	0	Parent=Os09t0560700-01
Chr09	irgsp1_rep	CDS	22278634	22278783	.	+	2	Parent=Os09t0560700-01
Chr09	irgsp1_rep	CDS	22279170	22279346	.	+	2	Parent=Os09t0560700-01
Chr09	irgsp1_rep	CDS	22279468	22279556	.	+	2	Parent=Os09t0560700-01
Chr09	irgsp1_rep	CDS	22279654	22279718	.	+	0	Parent=Os09t0560700-01
Chr09	irgsp1_rep	CDS	22279840	22279942	.	+	1	Parent=Os09t0560700-01
Chr09	irgsp1_rep	CDS	22280437	22280547	.	+	0	Parent=Os09t0560700-01
Chr09	irgsp1_rep	CDS	22280701	22280829	.	+	0	Parent=Os09t0560700-01
Chr09	irgsp1_rep	three_prime_UTR	22280830	22281031	.	+	.	Parent=Os09t0560700-01
Chr09	irgsp1_rep	mRNA	22278360	22281043	.	+	.	ID=Os09t0560700-02;Name=Os09t0560700-02;Locus_id=Os09g0560700;Note=Molybdenum cofactor sulfurase%2C C-terminal domain containing protein.;Transcript_evidence=AK105941 (DDBJ%2C Best hit);ORF_evidence=Q0MRQ7 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: molybdenum ion binding (GO:0030151),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Molybdenum cofactor sulfurase%2C C-terminal (IPR005302),MOSC%2C N-terminal beta barrel (IPR005303),Pyruvate kinase-like%2C insert domain (IPR011037);NIAS_FLcDNA=001-205-B12;Expression=AK105941;TENOR=Os09t0560700-02;KEGG=Os09t0560700-02
Chr09	irgsp1_rep	five_prime_UTR	22278360	22278384	.	+	.	Parent=Os09t0560700-02
Chr09	irgsp1_rep	CDS	22278385	22278535	.	+	0	Parent=Os09t0560700-02
Chr09	irgsp1_rep	CDS	22278634	22278783	.	+	2	Parent=Os09t0560700-02
Chr09	irgsp1_rep	CDS	22279170	22279346	.	+	2	Parent=Os09t0560700-02
Chr09	irgsp1_rep	CDS	22279468	22279556	.	+	2	Parent=Os09t0560700-02
Chr09	irgsp1_rep	CDS	22279654	22279718	.	+	0	Parent=Os09t0560700-02
Chr09	irgsp1_rep	CDS	22279840	22279942	.	+	1	Parent=Os09t0560700-02
Chr09	irgsp1_rep	CDS	22280437	22280547	.	+	0	Parent=Os09t0560700-02
Chr09	irgsp1_rep	CDS	22280701	22280829	.	+	0	Parent=Os09t0560700-02
Chr09	irgsp1_rep	three_prime_UTR	22280830	22281043	.	+	.	Parent=Os09t0560700-02
Chr09	irgsp1_rep	mRNA	22281491	22284167	.	+	.	ID=Os09t0560800-01;Name=Os09t0560800-01;Locus_id=Os09g0560800;Note=Molybdenum cofactor sulfurase%2C C-terminal domain containing protein.;Transcript_evidence=AK101993 (DDBJ%2C Best hit);ORF_evidence=Q0MRQ7 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: molybdenum ion binding (GO:0030151),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Molybdenum cofactor sulfurase%2C C-terminal (IPR005302),MOSC%2C N-terminal beta barrel (IPR005303),Pyruvate kinase-like%2C insert domain (IPR011037);NIAS_FLcDNA=J033079H04;Expression=AK101993;TENOR=Os09t0560800-01;KEGG=Os09t0560800-01
Chr09	irgsp1_rep	five_prime_UTR	22281491	22281541	.	+	.	Parent=Os09t0560800-01
Chr09	irgsp1_rep	CDS	22281542	22281680	.	+	0	Parent=Os09t0560800-01
Chr09	irgsp1_rep	CDS	22281764	22281910	.	+	2	Parent=Os09t0560800-01
Chr09	irgsp1_rep	CDS	22282356	22282532	.	+	2	Parent=Os09t0560800-01
Chr09	irgsp1_rep	CDS	22282658	22282746	.	+	2	Parent=Os09t0560800-01
Chr09	irgsp1_rep	CDS	22282869	22282933	.	+	0	Parent=Os09t0560800-01
Chr09	irgsp1_rep	CDS	22283051	22283153	.	+	1	Parent=Os09t0560800-01
Chr09	irgsp1_rep	CDS	22283610	22283720	.	+	0	Parent=Os09t0560800-01
Chr09	irgsp1_rep	CDS	22283836	22283964	.	+	0	Parent=Os09t0560800-01
Chr09	irgsp1_rep	three_prime_UTR	22283965	22284167	.	+	.	Parent=Os09t0560800-01
Chr09	irgsp1_rep	mRNA	22284198	22286541	.	-	.	ID=Os09t0560850-00;Name=Os09t0560850-00;Locus_id=Os09g0560850;Note=Similar to T8K14.10.;Transcript_evidence=EU956754 (DDBJ);ORF_evidence=Q9SAK1 (UniProt);InterPro=X8 (IPR012946);TENOR=Os09t0560850-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	22286541	22286541	.	-	.	Parent=Os09t0560850-00
Chr09	irgsp1_rep	CDS	22286450	22286540	.	-	0	Parent=Os09t0560850-00
Chr09	irgsp1_rep	CDS	22284529	22286183	.	-	2	Parent=Os09t0560850-00
Chr09	irgsp1_rep	three_prime_UTR	22284514	22284528	.	-	.	Parent=Os09t0560850-00
Chr09	irgsp1_rep	three_prime_UTR	22284198	22284375	.	-	.	Parent=Os09t0560850-00
Chr09	irgsp1_rep	mRNA	22287181	22291728	.	-	.	ID=Os09t0560900-01;Name=Os09t0560900-01;Locus_id=Os09g0560900;RAP-DB Gene Symbol Synonym(s)=OsSUF4;RAP-DB Gene Name Synonym(s)=SUPPRESSOR OF FRI 4;CGSNL Gene Symbol=SIP1;CGSNL Gene Name=SDG723/OSTRX1 INTERACTION PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsSIP1%2C OsSUF4%2C SUF4;Oryzabase Gene Name Synonym(s)=SDG723/OsTrx1/OsSET33 Interaction Protein 1%2C SDG723/OsTrx1 Interaction Protein 1%2C SUPPRESSOR OF FRI 4;Note=C2H2-type zinc finger transcription factor%2C Promotion of flowering;Transcript_evidence=AK067997;ORF_evidence=Q653D5;GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677);InterPro=Zinc finger%2C BED-type (IPR003656),Zinc finger C2H2-type (IPR013087);NIAS_FLcDNA=J013127D16;Manual Curation=July 8%2C 2019;Literature_PMID=31278262;Oryzabase=22411;Expression=AK067997;TENOR=Os09t0560900-01;KEGG=Os09t0560900-01
Chr09	irgsp1_rep	five_prime_UTR	22291549	22291728	.	-	.	Parent=Os09t0560900-01
Chr09	irgsp1_rep	CDS	22291358	22291548	.	-	0	Parent=Os09t0560900-01
Chr09	irgsp1_rep	CDS	22290640	22290737	.	-	1	Parent=Os09t0560900-01
Chr09	irgsp1_rep	CDS	22290178	22290298	.	-	2	Parent=Os09t0560900-01
Chr09	irgsp1_rep	CDS	22289667	22290055	.	-	1	Parent=Os09t0560900-01
Chr09	irgsp1_rep	CDS	22289176	22289288	.	-	2	Parent=Os09t0560900-01
Chr09	irgsp1_rep	CDS	22288905	22289060	.	-	0	Parent=Os09t0560900-01
Chr09	irgsp1_rep	three_prime_UTR	22287181	22288904	.	-	.	Parent=Os09t0560900-01
Chr09	irgsp1_rep	mRNA	22287174	22291746	.	-	.	ID=Os09t0560900-02;Name=Os09t0560900-02;Locus_id=Os09g0560900;RAP-DB Gene Symbol Synonym(s)=SIP1;RAP-DB Gene Name Synonym(s)=SDG723/OsTrx1 Interaction Protein 1;CGSNL Gene Symbol=SIP1;CGSNL Gene Name=SDG723/OSTRX1 INTERACTION PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsSIP1%2C OsSUF4%2C SUF4;Oryzabase Gene Name Synonym(s)=SDG723/OsTrx1/OsSET33 Interaction Protein 1%2C SDG723/OsTrx1 Interaction Protein 1%2C SUPPRESSOR OF FRI 4;Note=C2H2 zinc finger protein%2C Transcription factor%2C Regulation of flowering time;Transcript_evidence=Inferred from literature;ORF_evidence=B9G525;GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677);InterPro=Zinc finger%2C BED-type (IPR003656),Zinc finger C2H2-type (IPR013087);Manual Curation=April 5%2C 2018;Literature_PMID=29611871;Oryzabase=22411
Chr09	irgsp1_rep	five_prime_UTR	22291549	22291746	.	-	.	Parent=Os09t0560900-02
Chr09	irgsp1_rep	CDS	22291358	22291548	.	-	0	Parent=Os09t0560900-02
Chr09	irgsp1_rep	CDS	22290640	22290737	.	-	1	Parent=Os09t0560900-02
Chr09	irgsp1_rep	CDS	22290178	22290298	.	-	2	Parent=Os09t0560900-02
Chr09	irgsp1_rep	CDS	22289667	22290055	.	-	1	Parent=Os09t0560900-02
Chr09	irgsp1_rep	CDS	22289176	22289288	.	-	2	Parent=Os09t0560900-02
Chr09	irgsp1_rep	CDS	22289007	22289060	.	-	0	Parent=Os09t0560900-02
Chr09	irgsp1_rep	CDS	22287565	22287636	.	-	0	Parent=Os09t0560900-02
Chr09	irgsp1_rep	three_prime_UTR	22287174	22287564	.	-	.	Parent=Os09t0560900-02
Chr09	irgsp1_rep	mRNA	22292353	22293718	.	+	.	ID=Os09t0561000-01;Name=Os09t0561000-01;Locus_id=Os09g0561000;Note=Similar to Wall-associated kinase-like 2.;Transcript_evidence=AK241668 (DDBJ%2C Best hit);ORF_evidence=Q3S2H9 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EGF-type aspartate/asparagine hydroxylation site (IPR000152),EGF-like calcium-binding (IPR001881),EGF-like calcium-binding%2C conserved site (IPR018097);NIAS_FLcDNA=J065192D04;TENOR=Os09t0561000-01;KEGG=Os09t0561000-01
Chr09	irgsp1_rep	five_prime_UTR	22292353	22292410	.	+	.	Parent=Os09t0561000-01
Chr09	irgsp1_rep	CDS	22292411	22293523	.	+	0	Parent=Os09t0561000-01
Chr09	irgsp1_rep	three_prime_UTR	22293524	22293718	.	+	.	Parent=Os09t0561000-01
Chr09	irgsp1_rep	mRNA	22307502	22311526	.	+	.	ID=Os09t0561450-00;Name=Os09t0561450-00;Locus_id=Os09g0561450;CGSNL Gene Symbol=WAK89B;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 89B;Oryzabase Gene Symbol Synonym(s)=OsWAK89b;Note=EGF-type aspartate/asparagine hydroxylation site domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q653D1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=EGF-type aspartate/asparagine hydroxylation site (IPR000152),Protein kinase%2C catalytic domain (IPR000719),Epidermal growth factor-like%2C type 3 (IPR000742),EGF-like calcium-binding (IPR001881),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EGF-like calcium-binding%2C conserved site (IPR018097),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=6980;TENOR=Os09t0561450-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	22307502	22308453	.	+	0	Parent=Os09t0561450-00
Chr09	irgsp1_rep	CDS	22308556	22308696	.	+	2	Parent=Os09t0561450-00
Chr09	irgsp1_rep	CDS	22308961	22310096	.	+	2	Parent=Os09t0561450-00
Chr09	irgsp1_rep	CDS	22311353	22311526	.	+	0	Parent=Os09t0561450-00
Chr09	irgsp1_rep	mRNA	22309056	22310030	.	-	.	ID=Os09t0561466-00;Name=Os09t0561466-00;Locus_id=Os09g0561466;Note=Non-protein coding transcript.;Transcript_evidence=tplb0037c11 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os09t0561466-00
Chr09	irgsp1_rep	exon	22309056	22310030	.	-	.	Parent=Os09t0561466-00
Chr09	irgsp1_rep	mRNA	22311665	22314492	.	+	.	ID=Os09t0561500-01;Name=Os09t0561500-01;Locus_id=Os09g0561500;RAP-DB Gene Symbol Synonym(s)=WAK90%2C OsWAK90;RAP-DB Gene Name Synonym(s)=WALL-ASSOCIATED KINASE GENE 90;CGSNL Gene Symbol=WAK90;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 90;Oryzabase Gene Symbol Synonym(s)=OsWAK90;Note=Wall-associated kinase%2C Rice blast resistance;Transcript_evidence=NM_001070467;ORF_evidence=Q653D0;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: polysaccharide binding (GO:0030247);InterPro=Wall-associated receptor kinase%2C galacturonan-binding domain (IPR025287),EGF-like domain (IPR000742),EGF-like calcium-binding domain (IPR001881),Concanavalin A-like lectin/glucanase domain (IPR013320),Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine/threonine/dual specificity protein kinase%2C catalytic  domain (IPR002290),Serine-threonine/tyrosine-protein kinase catalytic domain (IPR001245),EGF-like calcium-binding%2C conserved site (IPR018097),EGF-type aspartate/asparagine hydroxylation site (IPR000152),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);Manual Curation=January 26%2C 2016;Literature_PMID=26772971;Oryzabase=6981;TENOR=Os09t0561500-00
Chr09	irgsp1_rep	CDS	22311665	22312802	.	+	0	Parent=Os09t0561500-01
Chr09	irgsp1_rep	CDS	22313285	22314492	.	+	2	Parent=Os09t0561500-01
Chr09	irgsp1_rep	mRNA	22315765	22318752	.	+	.	ID=Os09t0561600-01;Name=Os09t0561600-01;Locus_id=Os09g0561600;RAP-DB Gene Symbol Synonym(s)=DEES1%2C WAK91%2C OsWAK91%2C OsDEES1;RAP-DB Gene Name Synonym(s)=DEFECT IN EARLY EMBRYO SAC1%2C WALL-ASSOCIATED KINASE GENE 91;CGSNL Gene Symbol=DEES1;CGSNL Gene Name=DEFECT IN EARLY EMBRYO SAC1;Oryzabase Gene Symbol Synonym(s)=WAK91%2C OsWAK91%2C OsDEES1;Oryzabase Gene Name Synonym(s)=WALL-ASSOCIATED KINASE GENE 91;Note=Wall-associated receptor-like kinase%2C Regulation of early embryo sac development%2C Female gametophyte development%2C Positive regulation of rice blast resistance;Transcript_evidence=AK107166;ORF_evidence=Q653C9;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772),Molecular Function: polysaccharide binding (GO:0030247);InterPro=Wall-associated receptor kinase galacturonan-binding domain (IPR025287),Epidermal growth factor-like domain (IPR000742),EGF-like calcium-binding domain (IPR001881),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),EGF-like calcium-binding%2C conserved site (IPR018097),EGF-type aspartate/asparagine hydroxylation site (IPR000152),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=002-124-F08;Manual Curation=January 26%2C 2016;Literature_PMID=22885936,26772971;Oryzabase=6982;TENOR=Os09t0561600-01;KEGG=Os09t0561600-01
Chr09	irgsp1_rep	five_prime_UTR	22315765	22315782	.	+	.	Parent=Os09t0561600-01
Chr09	irgsp1_rep	CDS	22315783	22316929	.	+	0	Parent=Os09t0561600-01
Chr09	irgsp1_rep	CDS	22317436	22318451	.	+	2	Parent=Os09t0561600-01
Chr09	irgsp1_rep	three_prime_UTR	22318452	22318752	.	+	.	Parent=Os09t0561600-01
Chr09	irgsp1_rep	mRNA	22332691	22333339	.	+	.	ID=Os09t0562200-00;Name=Os09t0562200-00;Locus_id=Os09g0562200;Note=Similar to J013006I17%2C full insert sequence.;Transcript_evidence=EU942452 (DDBJ);ORF_evidence=B7EAV9 (UniProt);TENOR=Os09t0562200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	22332691	22333114	.	+	0	Parent=Os09t0562200-00
Chr09	irgsp1_rep	CDS	22333220	22333251	.	+	2	Parent=Os09t0562200-00
Chr09	irgsp1_rep	three_prime_UTR	22333252	22333339	.	+	.	Parent=Os09t0562200-00
Chr09	irgsp1_rep	mRNA	22341586	22345440	.	+	.	ID=Os09t0562400-00;Name=Os09t0562400-00;Locus_id=Os09g0562400;Oryzabase Gene Symbol Synonym(s)=Os_F0783;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G532 (UniProt);Oryzabase=17540;TENOR=Os09t0562400-00;KEGG=Os09t0562400-00
Chr09	irgsp1_rep	CDS	22341586	22341688	.	+	0	Parent=Os09t0562400-00
Chr09	irgsp1_rep	CDS	22342240	22342331	.	+	2	Parent=Os09t0562400-00
Chr09	irgsp1_rep	CDS	22342737	22343075	.	+	0	Parent=Os09t0562400-00
Chr09	irgsp1_rep	CDS	22345054	22345440	.	+	0	Parent=Os09t0562400-00
Chr09	irgsp1_rep	mRNA	22348739	22351491	.	+	.	ID=Os09t0562600-01;Name=Os09t0562600-01;Locus_id=Os09g0562600;RAP-DB Gene Symbol Synonym(s)=WAK92%2C OsWAK92%2C OsDEES1-L4;RAP-DB Gene Name Synonym(s)=WALL-ASSOCIATED KINASE GENE 92;CGSNL Gene Symbol=WAK92;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 92;Oryzabase Gene Symbol Synonym(s)=OsWAK92%2C OsDEES1-L4;Note=Wall-associated kinase%2C Positive regulation of rice blast resistance;Transcript_evidence=AK102702;ORF_evidence=Q0IZL6;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: polysaccharide binding (GO:0030247);InterPro=Wall-associated receptor kinase%2C galacturonan-binding domain (IPR025287),EGF-like domain (IPR000742),Growth factor receptor cysteine-rich domain (IPR009030),EGF-like calcium-binding domain (IPR001881),Concanavalin A-like lectin/glucanase domain (IPR013320),Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine/threonine/dual specificity protein kinase%2C catalytic  domain (IPR002290),EGF-like calcium-binding%2C conserved site (IPR018097),EGF-type aspartate/asparagine hydroxylation site (IPR000152),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J033103N20;Manual Curation=January 26%2C 2016;Literature_PMID=26772971,22885936;Oryzabase=6983;Expression=AK102702;TENOR=Os09t0562600-01;KEGG=Os09t0562600-01
Chr09	irgsp1_rep	five_prime_UTR	22348739	22348768	.	+	.	Parent=Os09t0562600-01
Chr09	irgsp1_rep	CDS	22348769	22349804	.	+	0	Parent=Os09t0562600-01
Chr09	irgsp1_rep	CDS	22349882	22350040	.	+	2	Parent=Os09t0562600-01
Chr09	irgsp1_rep	CDS	22350149	22351362	.	+	2	Parent=Os09t0562600-01
Chr09	irgsp1_rep	three_prime_UTR	22351363	22351491	.	+	.	Parent=Os09t0562600-01
Chr09	irgsp1_rep	mRNA	22351648	22353547	.	-	.	ID=Os09t0562700-01;Name=Os09t0562700-01;Locus_id=Os09g0562700;Note=Conserved hypothetical protein.;Transcript_evidence=AK108733 (DDBJ%2C Best hit);ORF_evidence=Q653B9 (UniProt);NIAS_FLcDNA=002-150-D05;TENOR=Os09t0562700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	22353491	22353547	.	-	.	Parent=Os09t0562700-01
Chr09	irgsp1_rep	five_prime_UTR	22352972	22353000	.	-	.	Parent=Os09t0562700-01
Chr09	irgsp1_rep	CDS	22352967	22352971	.	-	0	Parent=Os09t0562700-01
Chr09	irgsp1_rep	CDS	22351827	22352460	.	-	1	Parent=Os09t0562700-01
Chr09	irgsp1_rep	three_prime_UTR	22351648	22351826	.	-	.	Parent=Os09t0562700-01
Chr09	irgsp1_rep	mRNA	22354956	22356996	.	-	.	ID=Os09t0562750-00;Name=Os09t0562750-00;Locus_id=Os09g0562750;Note=Protein of unknown function DUF594 domain containing protein.;Transcript_evidence=AK373394 (DDBJ);ORF_evidence=Q653B8 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);TENOR=Os09t0562750-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	22356996	22356996	.	-	.	Parent=Os09t0562750-00
Chr09	irgsp1_rep	CDS	22354956	22356995	.	-	0	Parent=Os09t0562750-00
Chr09	irgsp1_rep	mRNA	22367879	22373612	.	-	.	ID=Os09t0563200-01;Name=Os09t0563200-01;Locus_id=Os09g0563200;CGSNL Gene Symbol=HAK18;CGSNL Gene Name=HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 18;Oryzabase Gene Symbol Synonym(s)=OsHAK18;Oryzabase Gene Name Synonym(s)=High-affinity Potassium(K+) Transporter 18%2C Potassium transporter 18;Note=Similar to Potassium transporter 11 (AtPOT11).;Transcript_evidence=AK065464 (DDBJ%2C Best hit);ORF_evidence=Q653B6 (UniProt);GO=Biological Process: potassium ion transmembrane transport (GO:0071805),Cellular Component: membrane (GO:0016020),Molecular Function: potassium ion transmembrane transporter activity (GO:0015079);InterPro=K+ potassium transporter (IPR003855);NIAS_FLcDNA=J013020H24;Oryzabase=8672;Expression=AK065464;TENOR=Os09t0563200-01;KEGG=Os09t0563200-01
Chr09	irgsp1_rep	five_prime_UTR	22373210	22373612	.	-	.	Parent=Os09t0563200-01
Chr09	irgsp1_rep	five_prime_UTR	22372496	22372536	.	-	.	Parent=Os09t0563200-01
Chr09	irgsp1_rep	CDS	22372379	22372495	.	-	0	Parent=Os09t0563200-01
Chr09	irgsp1_rep	CDS	22371822	22372047	.	-	0	Parent=Os09t0563200-01
Chr09	irgsp1_rep	CDS	22370972	22371217	.	-	2	Parent=Os09t0563200-01
Chr09	irgsp1_rep	CDS	22370505	22370555	.	-	2	Parent=Os09t0563200-01
Chr09	irgsp1_rep	CDS	22369862	22370119	.	-	2	Parent=Os09t0563200-01
Chr09	irgsp1_rep	CDS	22369724	22369776	.	-	2	Parent=Os09t0563200-01
Chr09	irgsp1_rep	CDS	22369488	22369602	.	-	0	Parent=Os09t0563200-01
Chr09	irgsp1_rep	CDS	22369116	22369370	.	-	2	Parent=Os09t0563200-01
Chr09	irgsp1_rep	CDS	22367945	22369005	.	-	2	Parent=Os09t0563200-01
Chr09	irgsp1_rep	three_prime_UTR	22367879	22367944	.	-	.	Parent=Os09t0563200-01
Chr09	irgsp1_rep	mRNA	22367969	22369053	.	+	.	ID=Os09t0563225-00;Name=Os09t0563225-00;Locus_id=Os09g0563225;Note=Hypothetical gene.;Transcript_evidence=EU968841 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0563225-00;KEGG=Os09t0563225-00
Chr09	irgsp1_rep	five_prime_UTR	22367969	22368253	.	+	.	Parent=Os09t0563225-00
Chr09	irgsp1_rep	CDS	22368254	22368898	.	+	0	Parent=Os09t0563225-00
Chr09	irgsp1_rep	three_prime_UTR	22368899	22369053	.	+	.	Parent=Os09t0563225-00
Chr09	irgsp1_rep	mRNA	22376934	22382482	.	+	.	ID=Os09t0563250-01;Name=Os09t0563250-01;Locus_id=Os09g0563250;Note=Zinc finger%2C DHHC-type%2C palmitoyltransferase domain containing protein.;Transcript_evidence=AK240820 (DDBJ%2C Best hit);ORF_evidence=B9G536 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C DHHC-type%2C palmitoyltransferase (IPR001594);NIAS_FLcDNA=J065011D10;TENOR=Os09t0563250-01;KEGG=Os09t0563250-01
Chr09	irgsp1_rep	five_prime_UTR	22376934	22377041	.	+	.	Parent=Os09t0563250-01
Chr09	irgsp1_rep	CDS	22377042	22377086	.	+	0	Parent=Os09t0563250-01
Chr09	irgsp1_rep	CDS	22378789	22378902	.	+	0	Parent=Os09t0563250-01
Chr09	irgsp1_rep	CDS	22378997	22379398	.	+	0	Parent=Os09t0563250-01
Chr09	irgsp1_rep	CDS	22379489	22379557	.	+	0	Parent=Os09t0563250-01
Chr09	irgsp1_rep	CDS	22379637	22379708	.	+	0	Parent=Os09t0563250-01
Chr09	irgsp1_rep	CDS	22379815	22379940	.	+	0	Parent=Os09t0563250-01
Chr09	irgsp1_rep	CDS	22380503	22380583	.	+	0	Parent=Os09t0563250-01
Chr09	irgsp1_rep	CDS	22380667	22380855	.	+	0	Parent=Os09t0563250-01
Chr09	irgsp1_rep	CDS	22380992	22381996	.	+	0	Parent=Os09t0563250-01
Chr09	irgsp1_rep	three_prime_UTR	22381997	22382482	.	+	.	Parent=Os09t0563250-01
Chr09	irgsp1_rep	mRNA	22378786	22381996	.	-	.	ID=Os09t0563275-00;Name=Os09t0563275-00;Locus_id=Os09g0563275;Note=Hypothetical protein.;Transcript_evidence=tplb0061k11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0563275-00
Chr09	irgsp1_rep	five_prime_UTR	22381767	22381996	.	-	.	Parent=Os09t0563275-00
Chr09	irgsp1_rep	CDS	22381509	22381766	.	-	0	Parent=Os09t0563275-00
Chr09	irgsp1_rep	three_prime_UTR	22381325	22381508	.	-	.	Parent=Os09t0563275-00
Chr09	irgsp1_rep	three_prime_UTR	22380990	22381216	.	-	.	Parent=Os09t0563275-00
Chr09	irgsp1_rep	three_prime_UTR	22380636	22380853	.	-	.	Parent=Os09t0563275-00
Chr09	irgsp1_rep	three_prime_UTR	22379813	22379993	.	-	.	Parent=Os09t0563275-00
Chr09	irgsp1_rep	three_prime_UTR	22379636	22379704	.	-	.	Parent=Os09t0563275-00
Chr09	irgsp1_rep	three_prime_UTR	22379487	22379556	.	-	.	Parent=Os09t0563275-00
Chr09	irgsp1_rep	three_prime_UTR	22378991	22379396	.	-	.	Parent=Os09t0563275-00
Chr09	irgsp1_rep	three_prime_UTR	22378786	22378897	.	-	.	Parent=Os09t0563275-00
Chr09	irgsp1_rep	mRNA	22382926	22386991	.	+	.	ID=Os09t0563300-01;Name=Os09t0563300-01;Locus_id=Os09g0563300;CGSNL Gene Symbol=TCD9;Oryzabase Gene Symbol Synonym(s)=OsCPn60alpha3%2C OsCPn60a3;Oryzabase Gene Name Synonym(s)=Rubisco subunit-binding protein%2C chaperonin 60 alpha subunit 3%2C thermo-sensitive chloroplast development 9;Note=Similar to GroEL-like chaperone%2C ATPase.;Transcript_evidence=AK068277 (DDBJ%2C Best hit);ORF_evidence=Q2MGR4 (UniProt);GO=Biological Process: cellular protein metabolic process (GO:0044267),Molecular Function: ATP binding (GO:0005524);InterPro=Chaperonin Cpn60/TCP-1 (IPR002423),Chaperone%2C tailless complex polypeptide 1 (IPR017998);NIAS_FLcDNA=J013146G10;Oryzabase=12452;TENOR=Os09t0563300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	22382926	22383160	.	+	.	Parent=Os09t0563300-01
Chr09	irgsp1_rep	CDS	22383161	22383371	.	+	0	Parent=Os09t0563300-01
Chr09	irgsp1_rep	CDS	22383685	22383806	.	+	2	Parent=Os09t0563300-01
Chr09	irgsp1_rep	CDS	22383889	22384170	.	+	0	Parent=Os09t0563300-01
Chr09	irgsp1_rep	three_prime_UTR	22384171	22384450	.	+	.	Parent=Os09t0563300-01
Chr09	irgsp1_rep	three_prime_UTR	22384655	22384961	.	+	.	Parent=Os09t0563300-01
Chr09	irgsp1_rep	three_prime_UTR	22385281	22385531	.	+	.	Parent=Os09t0563300-01
Chr09	irgsp1_rep	three_prime_UTR	22385728	22385928	.	+	.	Parent=Os09t0563300-01
Chr09	irgsp1_rep	three_prime_UTR	22386325	22386991	.	+	.	Parent=Os09t0563300-01
Chr09	irgsp1_rep	mRNA	22382924	22387028	.	+	.	ID=Os09t0563300-02;Name=Os09t0563300-02;Locus_id=Os09g0563300;RAP-DB Gene Symbol Synonym(s)=TCD9%2C OsCPn60alpha3%2C OsCPn60&alpha%3B3;RAP-DB Gene Name Synonym(s)=Rubisco subunit-binding protein%2C chaperonin 60 alpha subunit 3%2C thermo-sensitive chloroplast development 9;CGSNL Gene Symbol=TCD9;Oryzabase Gene Symbol Synonym(s)=OsCPn60alpha3%2C OsCPn60a3;Oryzabase Gene Name Synonym(s)=Rubisco subunit-binding protein%2C chaperonin 60 alpha subunit 3%2C thermo-sensitive chloroplast development 9;Note=Alpha subunit of chaperonin protein 60%2C Chloroplast development at early leaf stage;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Biological Process: protein refolding (GO:0042026),Molecular Function: ATP binding (GO:0005524),Cellular Component: cytoplasm (GO:0005737);InterPro=Chaperonin Cpn60/TCP-1 family (IPR002423),Chaperonin Cpn60 (IPR001844),GroEL-like equatorial domain (IPR027413),GroEL-like apical domain (IPR027409);NIAS_FLcDNA=001-033-B08 (truncated);Manual Curation=January 24%2C 2017;Literature_PMID=24388528;Oryzabase=12452;Expression=AK060773;TENOR=Os09t0563300-02;KEGG=Os09t0563300-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	22382924	22383160	.	+	.	Parent=Os09t0563300-02
Chr09	irgsp1_rep	CDS	22383161	22383371	.	+	0	Parent=Os09t0563300-02
Chr09	irgsp1_rep	CDS	22383685	22383806	.	+	2	Parent=Os09t0563300-02
Chr09	irgsp1_rep	CDS	22383889	22384096	.	+	0	Parent=Os09t0563300-02
Chr09	irgsp1_rep	CDS	22384305	22384450	.	+	2	Parent=Os09t0563300-02
Chr09	irgsp1_rep	CDS	22384655	22384961	.	+	0	Parent=Os09t0563300-02
Chr09	irgsp1_rep	CDS	22385281	22385531	.	+	2	Parent=Os09t0563300-02
Chr09	irgsp1_rep	CDS	22385728	22385928	.	+	0	Parent=Os09t0563300-02
Chr09	irgsp1_rep	CDS	22386325	22386633	.	+	0	Parent=Os09t0563300-02
Chr09	irgsp1_rep	three_prime_UTR	22386634	22387028	.	+	.	Parent=Os09t0563300-02
Chr09	irgsp1_rep	mRNA	22400187	22404363	.	+	.	ID=Os09t0563700-01;Name=Os09t0563700-01;Locus_id=Os09g0563700;Note=Kelch related domain containing protein.;Transcript_evidence=AK106611 (DDBJ%2C Best hit),AK103005 (DDBJ%2C Best hit);ORF_evidence=B8BEL3 (UniProt);InterPro=Development/cell death domain (IPR013989);NIAS_FLcDNA=002-112-F09,J033116H13;TENOR=Os09t0563700-01
Chr09	irgsp1_rep	five_prime_UTR	22400187	22400348	.	+	.	Parent=Os09t0563700-01
Chr09	irgsp1_rep	five_prime_UTR	22401135	22401140	.	+	.	Parent=Os09t0563700-01
Chr09	irgsp1_rep	CDS	22401141	22401425	.	+	0	Parent=Os09t0563700-01
Chr09	irgsp1_rep	CDS	22402076	22402192	.	+	0	Parent=Os09t0563700-01
Chr09	irgsp1_rep	CDS	22402281	22404011	.	+	0	Parent=Os09t0563700-01
Chr09	irgsp1_rep	three_prime_UTR	22404012	22404363	.	+	.	Parent=Os09t0563700-01
Chr09	irgsp1_rep	mRNA	22405480	22414370	.	-	.	ID=Os09t0563800-01;Name=Os09t0563800-01;Locus_id=Os09g0563800;Note=ATPase%2C AAA-type%2C core domain containing protein.;Transcript_evidence=AK068364 (DDBJ%2C Best hit);ORF_evidence=B9G539 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=ATPase%2C AAA-type%2C core (IPR003959);NIAS_FLcDNA=J013146L21;Expression=AK068364;TENOR=Os09t0563800-01;KEGG=Os09t0563800-01
Chr09	irgsp1_rep	five_prime_UTR	22413936	22414370	.	-	.	Parent=Os09t0563800-01
Chr09	irgsp1_rep	CDS	22413930	22413935	.	-	0	Parent=Os09t0563800-01
Chr09	irgsp1_rep	CDS	22411570	22411666	.	-	0	Parent=Os09t0563800-01
Chr09	irgsp1_rep	CDS	22411311	22411477	.	-	2	Parent=Os09t0563800-01
Chr09	irgsp1_rep	CDS	22410961	22411155	.	-	0	Parent=Os09t0563800-01
Chr09	irgsp1_rep	CDS	22410735	22410863	.	-	0	Parent=Os09t0563800-01
Chr09	irgsp1_rep	CDS	22409123	22409193	.	-	0	Parent=Os09t0563800-01
Chr09	irgsp1_rep	CDS	22408734	22409034	.	-	1	Parent=Os09t0563800-01
Chr09	irgsp1_rep	CDS	22406489	22406584	.	-	0	Parent=Os09t0563800-01
Chr09	irgsp1_rep	CDS	22406362	22406417	.	-	0	Parent=Os09t0563800-01
Chr09	irgsp1_rep	CDS	22406160	22406277	.	-	1	Parent=Os09t0563800-01
Chr09	irgsp1_rep	CDS	22405757	22405804	.	-	0	Parent=Os09t0563800-01
Chr09	irgsp1_rep	three_prime_UTR	22405480	22405756	.	-	.	Parent=Os09t0563800-01
Chr09	irgsp1_rep	mRNA	22407489	22408082	.	+	.	ID=Os09t0563901-00;Name=Os09t0563901-00;Locus_id=Os09g0563901;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os09t0563901-00;KEGG=Os09t0563901-00
Chr09	irgsp1_rep	CDS	22407489	22408082	.	+	0	Parent=Os09t0563901-00
Chr09	irgsp1_rep	mRNA	22418846	22420093	.	-	.	ID=Os09t0563950-00;Name=Os09t0563950-00;Locus_id=Os09g0563950;Oryzabase Gene Symbol Synonym(s)=OsFbox505%2C Os_F0638;Oryzabase Gene Name Synonym(s)=F-box protein 505;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001175984.1 (RefSeq);Oryzabase=17275;TENOR=Os09t0563950-00;KEGG=Os09t0563950-00
Chr09	irgsp1_rep	CDS	22418846	22420093	.	-	0	Parent=Os09t0563950-00
Chr09	irgsp1_rep	mRNA	22420898	22422556	.	-	.	ID=Os09t0564000-01;Name=Os09t0564000-01;Locus_id=Os09g0564000;Oryzabase Gene Name Synonym(s)=cysteine-type endopeptidase;Note=Peptidase C1A%2C papain family protein.;Transcript_evidence=AK071733 (DDBJ%2C Best hit);ORF_evidence=B9G542 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase%2C cysteine peptidase active site (IPR000169),Peptidase C1A%2C papain C-terminal (IPR000668),Peptidase C1A%2C papain (IPR013128),Proteinase inhibitor I29%2C cathepsin propeptide (IPR013201);NIAS_FLcDNA=J023107H18;Oryzabase=23432;Expression=AK071733;TENOR=Os09t0564000-01;KEGG=Os09t0564000-01
Chr09	irgsp1_rep	five_prime_UTR	22422361	22422556	.	-	.	Parent=Os09t0564000-01
Chr09	irgsp1_rep	CDS	22421898	22422360	.	-	0	Parent=Os09t0564000-01
Chr09	irgsp1_rep	CDS	22421200	22421588	.	-	2	Parent=Os09t0564000-01
Chr09	irgsp1_rep	three_prime_UTR	22420898	22421199	.	-	.	Parent=Os09t0564000-01
Chr09	irgsp1_rep	mRNA	22427465	22433496	.	-	.	ID=Os09t0564200-01;Name=Os09t0564200-01;Locus_id=Os09g0564200;Note=Hypothetical conserved gene.;Transcript_evidence=AK243212 (DDBJ%2C Best hit);ORF_evidence=NP_001063943.2 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase%2C cysteine peptidase active site (IPR000169),Peptidase C1A%2C papain C-terminal (IPR000668),Peptidase C1A%2C papain (IPR013128);NIAS_FLcDNA=J100042M20;TENOR=Os09t0564200-01;KEGG=Os09t0564200-01
Chr09	irgsp1_rep	five_prime_UTR	22432892	22433496	.	-	.	Parent=Os09t0564200-01
Chr09	irgsp1_rep	CDS	22432840	22432891	.	-	0	Parent=Os09t0564200-01
Chr09	irgsp1_rep	CDS	22428287	22428669	.	-	2	Parent=Os09t0564200-01
Chr09	irgsp1_rep	CDS	22427572	22427829	.	-	0	Parent=Os09t0564200-01
Chr09	irgsp1_rep	three_prime_UTR	22427465	22427571	.	-	.	Parent=Os09t0564200-01
Chr09	irgsp1_rep	mRNA	22438076	22439478	.	-	.	ID=Os09t0564400-00;Name=Os09t0564400-00;Locus_id=Os09g0564400;Note=Hypothetical conserved gene.;Transcript_evidence=Z97023 (DDBJ);ORF_evidence=B9G543 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase%2C cysteine peptidase active site (IPR000169),Peptidase C1A%2C papain C-terminal (IPR000668),Peptidase C1A%2C papain (IPR013128),Proteinase inhibitor I29%2C cathepsin propeptide (IPR013201);TENOR=Os09t0564400-00;KEGG=Os09t0564400-00 (EC:3.4.22.15)
Chr09	irgsp1_rep	CDS	22439019	22439478	.	-	0	Parent=Os09t0564400-00
Chr09	irgsp1_rep	CDS	22438484	22438866	.	-	2	Parent=Os09t0564400-00
Chr09	irgsp1_rep	CDS	22438076	22438342	.	-	0	Parent=Os09t0564400-00
Chr09	irgsp1_rep	mRNA	22443697	22448006	.	+	.	ID=Os09t0564450-01;Name=Os09t0564450-01;Locus_id=Os09g0564450;Note=Non-protein coding transcript.;Transcript_evidence=AK288219 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090011I18;TENOR=Os09t0564450-01
Chr09	irgsp1_rep	exon	22443697	22448006	.	+	.	Parent=Os09t0564450-01
Chr09	irgsp1_rep	mRNA	22450380	22453264	.	-	.	ID=Os09t0564600-01;Name=Os09t0564600-01;Locus_id=Os09g0564600;Note=Peptidase C1A%2C papain family protein.;Transcript_evidence=AK289220 (DDBJ%2C Best hit);ORF_evidence=NP_001175985.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase%2C cysteine peptidase active site (IPR000169),Peptidase C1A%2C papain C-terminal (IPR000668),Peptidase C1A%2C papain (IPR013128),Proteinase inhibitor I29%2C cathepsin propeptide (IPR013201);NIAS_FLcDNA=J100065H20;TENOR=Os09t0564600-01;KEGG=Os09t0564600-01 (EC:3.4.22.15)
Chr09	irgsp1_rep	five_prime_UTR	22453220	22453264	.	-	.	Parent=Os09t0564600-01
Chr09	irgsp1_rep	CDS	22452739	22453219	.	-	0	Parent=Os09t0564600-01
Chr09	irgsp1_rep	CDS	22452251	22452495	.	-	2	Parent=Os09t0564600-01
Chr09	irgsp1_rep	CDS	22451494	22451631	.	-	0	Parent=Os09t0564600-01
Chr09	irgsp1_rep	CDS	22450609	22450869	.	-	0	Parent=Os09t0564600-01
Chr09	irgsp1_rep	three_prime_UTR	22450380	22450608	.	-	.	Parent=Os09t0564600-01
Chr09	irgsp1_rep	mRNA	22455481	22457503	.	-	.	ID=Os09t0564700-00;Name=Os09t0564700-00;Locus_id=Os09g0564700;Note=Similar to Vignain.;Transcript_evidence=ab initio prediction;ORF_evidence=B6TYM9 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase%2C cysteine peptidase active site (IPR000169),Peptidase C1A%2C papain C-terminal (IPR000668),Peptidase C1A%2C papain (IPR013128),Proteinase inhibitor I29%2C cathepsin propeptide (IPR013201);TENOR=Os09t0564700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	22457158	22457503	.	-	0	Parent=Os09t0564700-00
Chr09	irgsp1_rep	CDS	22456074	22456453	.	-	2	Parent=Os09t0564700-00
Chr09	irgsp1_rep	CDS	22455481	22455759	.	-	0	Parent=Os09t0564700-00
Chr09	irgsp1_rep	mRNA	22459228	22461846	.	-	.	ID=Os09t0564800-01;Name=Os09t0564800-01;Locus_id=Os09g0564800;Note=Conserved hypothetical protein.;Transcript_evidence=AK069191 (DDBJ%2C Best hit);ORF_evidence=NP_001175602.1 (RefSeq);NIAS_FLcDNA=J023003N22;Expression=AK069191;TENOR=Os09t0564800-01;KEGG=Os09t0564800-01
Chr09	irgsp1_rep	five_prime_UTR	22460692	22461846	.	-	.	Parent=Os09t0564800-01
Chr09	irgsp1_rep	CDS	22460230	22460691	.	-	0	Parent=Os09t0564800-01
Chr09	irgsp1_rep	three_prime_UTR	22459228	22460229	.	-	.	Parent=Os09t0564800-01
Chr09	irgsp1_rep	mRNA	22488197	22491708	.	+	.	ID=Os09t0565000-00;Name=Os09t0565000-00;Locus_id=Os09g0565000;Note=Peptidase%2C cysteine peptidase active site domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q650W9 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase%2C cysteine peptidase active site (IPR000169),Peptidase C1A%2C papain C-terminal (IPR000668),Peptidase C1A%2C papain (IPR013128),Proteinase inhibitor I29%2C cathepsin propeptide (IPR013201);TENOR=Os09t0565000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	22488197	22488662	.	+	0	Parent=Os09t0565000-00
Chr09	irgsp1_rep	CDS	22488948	22489213	.	+	2	Parent=Os09t0565000-00
Chr09	irgsp1_rep	CDS	22489308	22489448	.	+	0	Parent=Os09t0565000-00
Chr09	irgsp1_rep	CDS	22491700	22491708	.	+	0	Parent=Os09t0565000-00
Chr09	irgsp1_rep	mRNA	22505067	22507526	.	-	.	ID=Os09t0565200-02;Name=Os09t0565200-02;Locus_id=Os09g0565200;Note=Similar to Nucleic acid-binding protein precursor.;Transcript_evidence=AK069121 (DDBJ%2C Best hit),AK104354 (DDBJ%2C Best hit);ORF_evidence=A6N0D0 (UniProt);NIAS_FLcDNA=J023007A14,001-034-H01;Oryzabase=17603;Expression=AK069121;TENOR=Os09t0565200-02;KEGG=Os09t0565200-02
Chr09	irgsp1_rep	five_prime_UTR	22507501	22507526	.	-	.	Parent=Os09t0565200-02
Chr09	irgsp1_rep	CDS	22506982	22507500	.	-	0	Parent=Os09t0565200-02
Chr09	irgsp1_rep	CDS	22506400	22506501	.	-	0	Parent=Os09t0565200-02
Chr09	irgsp1_rep	CDS	22505600	22505881	.	-	0	Parent=Os09t0565200-02
Chr09	irgsp1_rep	CDS	22505360	22505425	.	-	0	Parent=Os09t0565200-02
Chr09	irgsp1_rep	three_prime_UTR	22505067	22505359	.	-	.	Parent=Os09t0565200-02
Chr09	irgsp1_rep	mRNA	22505286	22507503	.	+	.	ID=Os09t0565250-00;Name=Os09t0565250-00;Locus_id=Os09g0565250;Note=Hypothetical gene.;Transcript_evidence=BT019263 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0565250-00
Chr09	irgsp1_rep	five_prime_UTR	22505286	22505425	.	+	.	Parent=Os09t0565250-00
Chr09	irgsp1_rep	five_prime_UTR	22505600	22505880	.	+	.	Parent=Os09t0565250-00
Chr09	irgsp1_rep	five_prime_UTR	22506399	22506448	.	+	.	Parent=Os09t0565250-00
Chr09	irgsp1_rep	CDS	22506449	22506492	.	+	0	Parent=Os09t0565250-00
Chr09	irgsp1_rep	CDS	22506974	22507503	.	+	1	Parent=Os09t0565250-00
Chr09	irgsp1_rep	mRNA	22507900	22510149	.	-	.	ID=Os09t0565300-01;Name=Os09t0565300-01;Locus_id=Os09g0565300;Note=Similar to RING-finger protein.;Transcript_evidence=AK243511 (DDBJ%2C Best hit);ORF_evidence=B8BEL7 (UniProt);InterPro=Copine (IPR010734);NIAS_FLcDNA=J100075C07;TENOR=Os09t0565300-01;KEGG=Os09t0565300-01
Chr09	irgsp1_rep	five_prime_UTR	22509747	22510149	.	-	.	Parent=Os09t0565300-01
Chr09	irgsp1_rep	CDS	22509456	22509746	.	-	0	Parent=Os09t0565300-01
Chr09	irgsp1_rep	three_prime_UTR	22508403	22509455	.	-	.	Parent=Os09t0565300-01
Chr09	irgsp1_rep	three_prime_UTR	22507900	22508279	.	-	.	Parent=Os09t0565300-01
Chr09	irgsp1_rep	mRNA	22511958	22513289	.	-	.	ID=Os09t0565350-00;Name=Os09t0565350-00;Locus_id=Os09g0565350;Oryzabase Gene Symbol Synonym(s)=OsFbox506%2C Os_F0596;Oryzabase Gene Name Synonym(s)=F-box protein 506;Note=Conserved hypothetical protein.;Transcript_evidence=AK376692 (DDBJ);ORF_evidence=Q650W5 (UniProt);Oryzabase=17276;TENOR=Os09t0565350-00
Chr09	irgsp1_rep	CDS	22511958	22513289	.	-	0	Parent=Os09t0565350-00
Chr09	irgsp1_rep	mRNA	22513509	22517201	.	-	.	ID=Os09t0565400-01;Name=Os09t0565400-01;Locus_id=Os09g0565400;Note=Lipoprotein%2C type 6 family protein.;Transcript_evidence=AK067821 (DDBJ%2C Best hit);ORF_evidence=B9G549 (UniProt);NIAS_FLcDNA=J013119M08;Expression=AK067821;TENOR=Os09t0565400-01;KEGG=Os09t0565400-01
Chr09	irgsp1_rep	five_prime_UTR	22517047	22517201	.	-	.	Parent=Os09t0565400-01
Chr09	irgsp1_rep	CDS	22515913	22517046	.	-	0	Parent=Os09t0565400-01
Chr09	irgsp1_rep	CDS	22515746	22515822	.	-	0	Parent=Os09t0565400-01
Chr09	irgsp1_rep	CDS	22515189	22515300	.	-	1	Parent=Os09t0565400-01
Chr09	irgsp1_rep	CDS	22514956	22515072	.	-	0	Parent=Os09t0565400-01
Chr09	irgsp1_rep	CDS	22513743	22514090	.	-	0	Parent=Os09t0565400-01
Chr09	irgsp1_rep	three_prime_UTR	22513509	22513742	.	-	.	Parent=Os09t0565400-01
Chr09	irgsp1_rep	mRNA	22513527	22513880	.	-	.	ID=Os09t0565400-02;Name=Os09t0565400-02;Locus_id=Os09g0565400;Note=Similar to predicted protein.;Transcript_evidence=AK059021 (DDBJ%2C Best hit);ORF_evidence=B9G549 (UniProt);NIAS_FLcDNA=001-021-B04;Expression=AK059021;TENOR=Os09t0565400-02;KEGG=Os09t0565400-02
Chr09	irgsp1_rep	CDS	22513743	22513880	.	-	0	Parent=Os09t0565400-02
Chr09	irgsp1_rep	three_prime_UTR	22513527	22513742	.	-	.	Parent=Os09t0565400-02
Chr09	irgsp1_rep	mRNA	22519444	22525652	.	+	.	ID=Os09t0565450-00;Name=Os09t0565450-00;Locus_id=Os09g0565450;Note=Hypothetical conserved gene.;Transcript_evidence=CT835840 (DDBJ%2C Best hit);ORF_evidence=B9G551 (UniProt);TENOR=Os09t0565450-00;KEGG=Os09t0565450-00
Chr09	irgsp1_rep	five_prime_UTR	22519444	22519613	.	+	.	Parent=Os09t0565450-00
Chr09	irgsp1_rep	CDS	22519614	22519816	.	+	0	Parent=Os09t0565450-00
Chr09	irgsp1_rep	CDS	22520552	22520817	.	+	1	Parent=Os09t0565450-00
Chr09	irgsp1_rep	CDS	22521276	22521445	.	+	2	Parent=Os09t0565450-00
Chr09	irgsp1_rep	CDS	22521544	22521755	.	+	0	Parent=Os09t0565450-00
Chr09	irgsp1_rep	CDS	22522066	22522108	.	+	1	Parent=Os09t0565450-00
Chr09	irgsp1_rep	three_prime_UTR	22522109	22522416	.	+	.	Parent=Os09t0565450-00
Chr09	irgsp1_rep	three_prime_UTR	22522954	22523133	.	+	.	Parent=Os09t0565450-00
Chr09	irgsp1_rep	three_prime_UTR	22523270	22523408	.	+	.	Parent=Os09t0565450-00
Chr09	irgsp1_rep	three_prime_UTR	22523502	22523650	.	+	.	Parent=Os09t0565450-00
Chr09	irgsp1_rep	three_prime_UTR	22524789	22524900	.	+	.	Parent=Os09t0565450-00
Chr09	irgsp1_rep	three_prime_UTR	22525303	22525652	.	+	.	Parent=Os09t0565450-00
Chr09	irgsp1_rep	mRNA	22529529	22535488	.	+	.	ID=Os09t0565500-01;Name=Os09t0565500-01;Locus_id=Os09g0565500;Note=Conserved hypothetical protein.;Transcript_evidence=AK063286 (DDBJ%2C Best hit);ORF_evidence=B9G551 (UniProt);NIAS_FLcDNA=001-113-D08;TENOR=Os09t0565500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	22529529	22529563	.	+	0	Parent=Os09t0565500-01
Chr09	irgsp1_rep	CDS	22529919	22530315	.	+	1	Parent=Os09t0565500-01
Chr09	irgsp1_rep	CDS	22530837	22530939	.	+	0	Parent=Os09t0565500-01
Chr09	irgsp1_rep	CDS	22531041	22531171	.	+	2	Parent=Os09t0565500-01
Chr09	irgsp1_rep	CDS	22531491	22531562	.	+	0	Parent=Os09t0565500-01
Chr09	irgsp1_rep	CDS	22531867	22531948	.	+	0	Parent=Os09t0565500-01
Chr09	irgsp1_rep	CDS	22532478	22532585	.	+	2	Parent=Os09t0565500-01
Chr09	irgsp1_rep	CDS	22532683	22532824	.	+	2	Parent=Os09t0565500-01
Chr09	irgsp1_rep	CDS	22533613	22533696	.	+	1	Parent=Os09t0565500-01
Chr09	irgsp1_rep	CDS	22533790	22534000	.	+	1	Parent=Os09t0565500-01
Chr09	irgsp1_rep	CDS	22534082	22534136	.	+	0	Parent=Os09t0565500-01
Chr09	irgsp1_rep	CDS	22534231	22534322	.	+	2	Parent=Os09t0565500-01
Chr09	irgsp1_rep	CDS	22534406	22534466	.	+	0	Parent=Os09t0565500-01
Chr09	irgsp1_rep	CDS	22534756	22535114	.	+	2	Parent=Os09t0565500-01
Chr09	irgsp1_rep	three_prime_UTR	22535115	22535488	.	+	.	Parent=Os09t0565500-01
Chr09	irgsp1_rep	mRNA	22536631	22540738	.	+	.	ID=Os09t0565600-01;Name=Os09t0565600-01;Locus_id=Os09g0565600;Note=Similar to Delta(14)-sterol reductase (EC 1.3.1.70) (C-14 sterol reductase) (Sterol C14-reductase) (FACKEL protein).;Transcript_evidence=AK242547 (DDBJ%2C Best hit);ORF_evidence=B5QT68 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: membrane (GO:0016020),Molecular Function: oxidoreductase activity%2C acting on the CH-CH group of donors%2C NAD or NADP as acceptor (GO:0016628);InterPro=Ergosterol biosynthesis ERG4/ERG24 (IPR001171),Sterol reductase%2C conserved site (IPR018083);NIAS_FLcDNA=J080318K21;TENOR=Os09t0565600-01;KEGG=Os09t0565600-01 (EC:1.3.1.70)
Chr09	irgsp1_rep	five_prime_UTR	22536631	22536681	.	+	.	Parent=Os09t0565600-01
Chr09	irgsp1_rep	CDS	22536682	22536729	.	+	0	Parent=Os09t0565600-01
Chr09	irgsp1_rep	CDS	22536813	22536930	.	+	0	Parent=Os09t0565600-01
Chr09	irgsp1_rep	CDS	22537023	22537093	.	+	2	Parent=Os09t0565600-01
Chr09	irgsp1_rep	CDS	22537194	22537250	.	+	0	Parent=Os09t0565600-01
Chr09	irgsp1_rep	CDS	22537666	22537757	.	+	0	Parent=Os09t0565600-01
Chr09	irgsp1_rep	CDS	22537999	22538046	.	+	1	Parent=Os09t0565600-01
Chr09	irgsp1_rep	CDS	22538792	22538912	.	+	1	Parent=Os09t0565600-01
Chr09	irgsp1_rep	CDS	22538991	22539037	.	+	0	Parent=Os09t0565600-01
Chr09	irgsp1_rep	CDS	22539191	22539272	.	+	1	Parent=Os09t0565600-01
Chr09	irgsp1_rep	CDS	22539487	22539563	.	+	0	Parent=Os09t0565600-01
Chr09	irgsp1_rep	CDS	22539668	22539787	.	+	1	Parent=Os09t0565600-01
Chr09	irgsp1_rep	CDS	22540259	22540333	.	+	1	Parent=Os09t0565600-01
Chr09	irgsp1_rep	CDS	22540413	22540566	.	+	1	Parent=Os09t0565600-01
Chr09	irgsp1_rep	three_prime_UTR	22540567	22540738	.	+	.	Parent=Os09t0565600-01
Chr09	irgsp1_rep	mRNA	22542195	22543863	.	+	.	ID=Os09t0565700-01;Name=Os09t0565700-01;Locus_id=Os09g0565700;Oryzabase Gene Symbol Synonym(s)=EIP3;Oryzabase Gene Name Synonym(s)=EBR1-interacting protein 3;Note=Prephenate dehydratase domain containing protein.;Transcript_evidence=AK066427 (DDBJ%2C Best hit);ORF_evidence=A3C1L2 (UniProt);GO=Biological Process: L-phenylalanine biosynthetic process (GO:0009094),Molecular Function: prephenate dehydratase activity (GO:0004664);InterPro=Prephenate dehydratase (IPR001086),Prephenate dehydratase%2C conserved site (IPR018528);NIAS_FLcDNA=J013060C12;Oryzabase=21991;Expression=AK066427;TENOR=Os09t0565700-01;KEGG=Os09t0565700-01
Chr09	irgsp1_rep	five_prime_UTR	22542195	22542365	.	+	.	Parent=Os09t0565700-01
Chr09	irgsp1_rep	CDS	22542366	22543571	.	+	0	Parent=Os09t0565700-01
Chr09	irgsp1_rep	three_prime_UTR	22543572	22543863	.	+	.	Parent=Os09t0565700-01
Chr09	irgsp1_rep	mRNA	22548039	22552725	.	-	.	ID=Os09t0565900-01;Name=Os09t0565900-01;Locus_id=Os09g0565900;Note=Conserved hypothetical protein.;Transcript_evidence=AK100675 (DDBJ%2C Best hit);ORF_evidence=B9G555 (UniProt);NIAS_FLcDNA=J023113C01;TENOR=Os09t0565900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	22552492	22552725	.	-	.	Parent=Os09t0565900-01
Chr09	irgsp1_rep	CDS	22552476	22552491	.	-	0	Parent=Os09t0565900-01
Chr09	irgsp1_rep	CDS	22551332	22551420	.	-	2	Parent=Os09t0565900-01
Chr09	irgsp1_rep	CDS	22551054	22551194	.	-	0	Parent=Os09t0565900-01
Chr09	irgsp1_rep	three_prime_UTR	22550046	22551053	.	-	.	Parent=Os09t0565900-01
Chr09	irgsp1_rep	three_prime_UTR	22549774	22549956	.	-	.	Parent=Os09t0565900-01
Chr09	irgsp1_rep	three_prime_UTR	22549117	22549257	.	-	.	Parent=Os09t0565900-01
Chr09	irgsp1_rep	three_prime_UTR	22548039	22549038	.	-	.	Parent=Os09t0565900-01
Chr09	irgsp1_rep	mRNA	22564044	22565353	.	+	.	ID=Os09t0566050-00;Name=Os09t0566050-00;Locus_id=Os09g0566050;Note=Similar to Prephenate dehydratase.;Transcript_evidence=AK374296 (DDBJ);ORF_evidence=Q01L56 (UniProt);GO=Biological Process: L-phenylalanine biosynthetic process (GO:0009094),Molecular Function: prephenate dehydratase activity (GO:0004664);InterPro=Prephenate dehydratase (IPR001086),Prephenate dehydratase%2C conserved site (IPR018528);TENOR=Os09t0566050-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	22564044	22565267	.	+	0	Parent=Os09t0566050-00
Chr09	irgsp1_rep	three_prime_UTR	22565268	22565353	.	+	.	Parent=Os09t0566050-00
Chr09	irgsp1_rep	mRNA	22564004	22565221	.	-	.	ID=Os09t0566075-00;Name=Os09t0566075-00;Locus_id=Os09g0566075;Note=Hypothetical gene.;Transcript_evidence=EU975661 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0566075-00
Chr09	irgsp1_rep	five_prime_UTR	22565220	22565221	.	-	.	Parent=Os09t0566075-00
Chr09	irgsp1_rep	CDS	22564004	22565219	.	-	0	Parent=Os09t0566075-00
Chr09	irgsp1_rep	mRNA	22566452	22572682	.	-	.	ID=Os09t0566100-01;Name=Os09t0566100-01;Locus_id=Os09g0566100;Note=ENTH/VHS domain containing protein.;Transcript_evidence=AK065725 (DDBJ%2C Best hit);ORF_evidence=Q650V5 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA polymerase II%2C large subunit%2C CTD (IPR006569),Domain of unknown function DUF618 (IPR006903),Zinc finger%2C C2H2 (IPR007087),ENTH/VHS (IPR008942),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J013035O15;Expression=AK065725;TENOR=Os09t0566100-01;KEGG=Os09t0566100-01
Chr09	irgsp1_rep	five_prime_UTR	22572449	22572682	.	-	.	Parent=Os09t0566100-01
Chr09	irgsp1_rep	CDS	22572137	22572448	.	-	0	Parent=Os09t0566100-01
Chr09	irgsp1_rep	CDS	22570682	22570783	.	-	0	Parent=Os09t0566100-01
Chr09	irgsp1_rep	CDS	22570274	22570532	.	-	0	Parent=Os09t0566100-01
Chr09	irgsp1_rep	CDS	22569941	22570071	.	-	2	Parent=Os09t0566100-01
Chr09	irgsp1_rep	CDS	22569269	22569841	.	-	0	Parent=Os09t0566100-01
Chr09	irgsp1_rep	CDS	22567181	22569013	.	-	0	Parent=Os09t0566100-01
Chr09	irgsp1_rep	three_prime_UTR	22566452	22567180	.	-	.	Parent=Os09t0566100-01
Chr09	irgsp1_rep	mRNA	22566593	22570783	.	-	.	ID=Os09t0566100-02;Name=Os09t0566100-02;Locus_id=Os09g0566100;Note=Hypothetical conserved gene.;Transcript_evidence=AK120477 (DDBJ%2C Best hit);ORF_evidence=Q650V5 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA polymerase II%2C large subunit%2C CTD (IPR006569),Domain of unknown function DUF618 (IPR006903),Zinc finger%2C C2H2 (IPR007087),ENTH/VHS (IPR008942);NIAS_FLcDNA=J013111I08;Expression=AK120477;TENOR=Os09t0566100-02;KEGG=Os09t0566100-02
Chr09	irgsp1_rep	CDS	22570682	22570783	.	-	0	Parent=Os09t0566100-02
Chr09	irgsp1_rep	CDS	22570274	22570532	.	-	0	Parent=Os09t0566100-02
Chr09	irgsp1_rep	CDS	22569941	22570071	.	-	2	Parent=Os09t0566100-02
Chr09	irgsp1_rep	CDS	22569269	22569841	.	-	0	Parent=Os09t0566100-02
Chr09	irgsp1_rep	CDS	22567181	22569013	.	-	0	Parent=Os09t0566100-02
Chr09	irgsp1_rep	three_prime_UTR	22566593	22567180	.	-	.	Parent=Os09t0566100-02
Chr09	irgsp1_rep	mRNA	22594085	22597478	.	+	.	ID=Os09t0566300-01;Name=Os09t0566300-01;Locus_id=Os09g0566300;Note=Hypothetical protein.;Transcript_evidence=AK102257 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033088I22;Expression=AK102257;TENOR=Os09t0566300-01;KEGG=Os09t0566300-01
Chr09	irgsp1_rep	five_prime_UTR	22594085	22594252	.	+	.	Parent=Os09t0566300-01
Chr09	irgsp1_rep	five_prime_UTR	22595843	22596852	.	+	.	Parent=Os09t0566300-01
Chr09	irgsp1_rep	CDS	22596853	22597248	.	+	0	Parent=Os09t0566300-01
Chr09	irgsp1_rep	three_prime_UTR	22597249	22597478	.	+	.	Parent=Os09t0566300-01
Chr09	irgsp1_rep	mRNA	22594929	22597428	.	-	.	ID=Os09t0566400-01;Name=Os09t0566400-01;Locus_id=Os09g0566400;Note=Conserved hypothetical protein.;Transcript_evidence=AK105885 (DDBJ%2C Best hit),AK061768 (DDBJ%2C Best hit);ORF_evidence=B8BEM3 (UniProt);NIAS_FLcDNA=001-204-D09,001-039-C01;TENOR=Os09t0566400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	22597187	22597428	.	-	.	Parent=Os09t0566400-01
Chr09	irgsp1_rep	CDS	22596851	22597186	.	-	0	Parent=Os09t0566400-01
Chr09	irgsp1_rep	three_prime_UTR	22595934	22596850	.	-	.	Parent=Os09t0566400-01
Chr09	irgsp1_rep	three_prime_UTR	22594929	22595301	.	-	.	Parent=Os09t0566400-01
Chr09	irgsp1_rep	mRNA	22594943	22597353	.	-	.	ID=Os09t0566400-02;Name=Os09t0566400-02;Locus_id=Os09g0566400;Note=Conserved hypothetical protein.;Transcript_evidence=AK098902 (DDBJ%2C Best hit);ORF_evidence=B8BEM3 (UniProt);NIAS_FLcDNA=J013002C10;TENOR=Os09t0566400-02
Chr09	irgsp1_rep	five_prime_UTR	22597187	22597353	.	-	.	Parent=Os09t0566400-02
Chr09	irgsp1_rep	CDS	22596851	22597186	.	-	0	Parent=Os09t0566400-02
Chr09	irgsp1_rep	three_prime_UTR	22595934	22596850	.	-	.	Parent=Os09t0566400-02
Chr09	irgsp1_rep	three_prime_UTR	22594943	22595301	.	-	.	Parent=Os09t0566400-02
Chr09	irgsp1_rep	mRNA	22601494	22608364	.	-	.	ID=Os09t0566550-01;Name=Os09t0566550-01;Locus_id=Os09g0566550;Oryzabase Gene Symbol Synonym(s)=OsCTR1%2C CTR1;Oryzabase Gene Name Synonym(s)=CONSTITUTIVE TRIPLE-RESPONSE1%2C CONSTITUTIVE TRIPLE RESPONSE 1;Note=Similar to serine/threonine protein kinase 1%2C CTR1.;Transcript_evidence=AK318529 (DDBJ%2C Best hit);ORF_evidence=XP_002326245.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J065162I20;Oryzabase=14992;TENOR=Os09t0566550-01;KEGG=Os09t0566550-01
Chr09	irgsp1_rep	five_prime_UTR	22608299	22608364	.	-	.	Parent=Os09t0566550-01
Chr09	irgsp1_rep	CDS	22607903	22608298	.	-	0	Parent=Os09t0566550-01
Chr09	irgsp1_rep	CDS	22607386	22607684	.	-	0	Parent=Os09t0566550-01
Chr09	irgsp1_rep	CDS	22607148	22607289	.	-	1	Parent=Os09t0566550-01
Chr09	irgsp1_rep	CDS	22606777	22606880	.	-	0	Parent=Os09t0566550-01
Chr09	irgsp1_rep	CDS	22606293	22606501	.	-	1	Parent=Os09t0566550-01
Chr09	irgsp1_rep	CDS	22605957	22606055	.	-	2	Parent=Os09t0566550-01
Chr09	irgsp1_rep	CDS	22605480	22605698	.	-	2	Parent=Os09t0566550-01
Chr09	irgsp1_rep	CDS	22605256	22605296	.	-	2	Parent=Os09t0566550-01
Chr09	irgsp1_rep	CDS	22605055	22605123	.	-	0	Parent=Os09t0566550-01
Chr09	irgsp1_rep	CDS	22604748	22604848	.	-	0	Parent=Os09t0566550-01
Chr09	irgsp1_rep	CDS	22604564	22604648	.	-	1	Parent=Os09t0566550-01
Chr09	irgsp1_rep	CDS	22604348	22604446	.	-	0	Parent=Os09t0566550-01
Chr09	irgsp1_rep	CDS	22603549	22603617	.	-	0	Parent=Os09t0566550-01
Chr09	irgsp1_rep	CDS	22603312	22603443	.	-	0	Parent=Os09t0566550-01
Chr09	irgsp1_rep	CDS	22603027	22603121	.	-	0	Parent=Os09t0566550-01
Chr09	irgsp1_rep	CDS	22602849	22602945	.	-	1	Parent=Os09t0566550-01
Chr09	irgsp1_rep	three_prime_UTR	22602658	22602848	.	-	.	Parent=Os09t0566550-01
Chr09	irgsp1_rep	three_prime_UTR	22601494	22601870	.	-	.	Parent=Os09t0566550-01
Chr09	irgsp1_rep	mRNA	22610396	22614781	.	+	.	ID=Os09t0566600-00;Name=Os09t0566600-00;Locus_id=Os09g0566600;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q650V0 (UniProt);TENOR=Os09t0566600-00;KEGG=Os09t0566600-00
Chr09	irgsp1_rep	CDS	22610396	22610637	.	+	0	Parent=Os09t0566600-00
Chr09	irgsp1_rep	CDS	22610717	22610875	.	+	1	Parent=Os09t0566600-00
Chr09	irgsp1_rep	CDS	22613173	22613899	.	+	1	Parent=Os09t0566600-00
Chr09	irgsp1_rep	CDS	22613981	22614093	.	+	0	Parent=Os09t0566600-00
Chr09	irgsp1_rep	CDS	22614169	22614203	.	+	1	Parent=Os09t0566600-00
Chr09	irgsp1_rep	CDS	22614678	22614781	.	+	2	Parent=Os09t0566600-00
Chr09	irgsp1_rep	mRNA	22622744	22623728	.	+	.	ID=Os09t0566700-01;Name=Os09t0566700-01;Locus_id=Os09g0566700;Note=Protein of unknown function DUF1677%2C plant domain containing protein.;Transcript_evidence=AK072866 (DDBJ%2C Best hit);ORF_evidence=Q6ESM6 (UniProt);InterPro=Protein of unknown function DUF1677%2C plant (IPR012876);NIAS_FLcDNA=J023142B09;TENOR=Os09t0566700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	22622744	22622834	.	+	.	Parent=Os09t0566700-01
Chr09	irgsp1_rep	CDS	22622835	22623092	.	+	0	Parent=Os09t0566700-01
Chr09	irgsp1_rep	three_prime_UTR	22623093	22623265	.	+	.	Parent=Os09t0566700-01
Chr09	irgsp1_rep	three_prime_UTR	22623363	22623728	.	+	.	Parent=Os09t0566700-01
Chr09	irgsp1_rep	mRNA	22631110	22633487	.	-	.	ID=Os09t0567000-01;Name=Os09t0567000-01;Locus_id=Os09g0567000;Note=Domain of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK065613 (DDBJ%2C Best hit);ORF_evidence=A3C1M0 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=J013026M04;Expression=AK065613;TENOR=Os09t0567000-01;KEGG=Os09t0567000-01
Chr09	irgsp1_rep	five_prime_UTR	22633324	22633487	.	-	.	Parent=Os09t0567000-01
Chr09	irgsp1_rep	CDS	22632818	22633323	.	-	0	Parent=Os09t0567000-01
Chr09	irgsp1_rep	CDS	22631964	22632739	.	-	1	Parent=Os09t0567000-01
Chr09	irgsp1_rep	CDS	22631292	22631473	.	-	2	Parent=Os09t0567000-01
Chr09	irgsp1_rep	three_prime_UTR	22631110	22631291	.	-	.	Parent=Os09t0567000-01
Chr09	irgsp1_rep	mRNA	22635478	22638314	.	+	.	ID=Os09t0567100-01;Name=Os09t0567100-01;Locus_id=Os09g0567100;Note=Hypothetical protein.;Transcript_evidence=AK069269 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023018K07;TENOR=Os09t0567100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	22635478	22635478	.	+	.	Parent=Os09t0567100-01
Chr09	irgsp1_rep	CDS	22635479	22636048	.	+	0	Parent=Os09t0567100-01
Chr09	irgsp1_rep	three_prime_UTR	22636049	22638314	.	+	.	Parent=Os09t0567100-01
Chr09	irgsp1_rep	mRNA	22639592	22640625	.	+	.	ID=Os09t0567201-00;Name=Os09t0567201-00;Locus_id=Os09g0567201;Note=Hypothetical protein.;Transcript_evidence=AK374609 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0567201-00
Chr09	irgsp1_rep	five_prime_UTR	22639592	22639715	.	+	.	Parent=Os09t0567201-00
Chr09	irgsp1_rep	CDS	22639716	22640150	.	+	0	Parent=Os09t0567201-00
Chr09	irgsp1_rep	three_prime_UTR	22640151	22640625	.	+	.	Parent=Os09t0567201-00
Chr09	irgsp1_rep	mRNA	22644685	22648632	.	+	.	ID=Os09t0567300-01;Name=Os09t0567300-01;Locus_id=Os09g0567300;RAP-DB Gene Symbol Synonym(s)=MDHAR%2C OsMDHAR%2C OsMDAR3%2C OsMDHAR3;RAP-DB Gene Name Synonym(s)=cytosolic monodehydroascorbate reductase%2C monodehydroascorbate reductase;CGSNL Gene Symbol=MDHAR3;CGSNL Gene Name=MONODEHYDROASCORBATE REDUCTASE 3;Oryzabase Gene Symbol Synonym(s)=MDHAR%2C OsMDHAR%2C OsMDAR3%2C MDAR3%2C OsMDHAR3%2C MDHAR1%2C OsMDHAR1;Oryzabase Gene Name Synonym(s)=cytosolic monodehydroascorbate reductase%2C monodehydroascorbate reductase;Note=Monodehydroascorbate reductase%2C Tolerance to ROS-induced oxidative stress;Transcript_evidence=AK071558,D85764;ORF_evidence=Q652L6,Q9XFZ3;GO=Biological Process: cell redox homeostasis (GO:0045454),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=FAD/NAD(P)-binding domain (IPR023753),FAD/NAD-linked reductase%2C dimerisation domain (IPR016156),Pyridine nucleotide-disulphide oxidoreductase%2C dimerisation domain (IPR004099);NIAS_FLcDNA=J023100J06;Manual Curation=November 21%2C 2016;Literature_PMID=27652777,27392090;Oryzabase=17790;Expression=AK071558;TENOR=Os09t0567300-01;KEGG=Os09t0567300-01 (EC:1.6.5.4)
Chr09	irgsp1_rep	five_prime_UTR	22644685	22644902	.	+	.	Parent=Os09t0567300-01
Chr09	irgsp1_rep	CDS	22644903	22644956	.	+	0	Parent=Os09t0567300-01
Chr09	irgsp1_rep	CDS	22645184	22645255	.	+	0	Parent=Os09t0567300-01
Chr09	irgsp1_rep	CDS	22645861	22645912	.	+	0	Parent=Os09t0567300-01
Chr09	irgsp1_rep	CDS	22646033	22646113	.	+	2	Parent=Os09t0567300-01
Chr09	irgsp1_rep	CDS	22646295	22646413	.	+	2	Parent=Os09t0567300-01
Chr09	irgsp1_rep	CDS	22646509	22646728	.	+	0	Parent=Os09t0567300-01
Chr09	irgsp1_rep	CDS	22646902	22647020	.	+	2	Parent=Os09t0567300-01
Chr09	irgsp1_rep	CDS	22647112	22647237	.	+	0	Parent=Os09t0567300-01
Chr09	irgsp1_rep	CDS	22647487	22647627	.	+	0	Parent=Os09t0567300-01
Chr09	irgsp1_rep	CDS	22648168	22648491	.	+	0	Parent=Os09t0567300-01
Chr09	irgsp1_rep	three_prime_UTR	22648492	22648632	.	+	.	Parent=Os09t0567300-01
Chr09	irgsp1_rep	mRNA	22649087	22652058	.	+	.	ID=Os09t0567366-01;Name=Os09t0567366-01;Locus_id=Os09g0567366;Note=Similar to Aldo-keto reductase/ oxidoreductase.;Transcript_evidence=AK068800 (DDBJ%2C Best hit);ORF_evidence=B6U2Y9 (UniProt);InterPro=Aldo/keto reductase (IPR001395),NADP-dependent oxidoreductase domain (IPR023210);NIAS_FLcDNA=J013158P04;TENOR=Os09t0567366-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	22649087	22649142	.	+	.	Parent=Os09t0567366-01
Chr09	irgsp1_rep	CDS	22649143	22649449	.	+	0	Parent=Os09t0567366-01
Chr09	irgsp1_rep	CDS	22649903	22649987	.	+	2	Parent=Os09t0567366-01
Chr09	irgsp1_rep	CDS	22650081	22650197	.	+	1	Parent=Os09t0567366-01
Chr09	irgsp1_rep	CDS	22650665	22650729	.	+	1	Parent=Os09t0567366-01
Chr09	irgsp1_rep	CDS	22650851	22650939	.	+	2	Parent=Os09t0567366-01
Chr09	irgsp1_rep	CDS	22651037	22651116	.	+	0	Parent=Os09t0567366-01
Chr09	irgsp1_rep	CDS	22651192	22651303	.	+	1	Parent=Os09t0567366-01
Chr09	irgsp1_rep	CDS	22651385	22651504	.	+	0	Parent=Os09t0567366-01
Chr09	irgsp1_rep	CDS	22651629	22651811	.	+	0	Parent=Os09t0567366-01
Chr09	irgsp1_rep	three_prime_UTR	22651812	22652058	.	+	.	Parent=Os09t0567366-01
Chr09	irgsp1_rep	mRNA	22650134	22652058	.	+	.	ID=Os09t0567366-02;Name=Os09t0567366-02;Locus_id=Os09g0567366;Note=Similar to Aldo-keto reductase/ oxidoreductase.;Transcript_evidence=AK060775 (DDBJ%2C Best hit);ORF_evidence=B6U2Y9 (UniProt);InterPro=Aldo/keto reductase (IPR001395),NADP-dependent oxidoreductase domain (IPR023210);NIAS_FLcDNA=001-033-B10;Expression=AK060775;TENOR=Os09t0567366-02;KEGG=Os09t0567366-02
Chr09	irgsp1_rep	five_prime_UTR	22650134	22650135	.	+	.	Parent=Os09t0567366-02
Chr09	irgsp1_rep	CDS	22650136	22650197	.	+	0	Parent=Os09t0567366-02
Chr09	irgsp1_rep	CDS	22650665	22650729	.	+	1	Parent=Os09t0567366-02
Chr09	irgsp1_rep	CDS	22650851	22650939	.	+	2	Parent=Os09t0567366-02
Chr09	irgsp1_rep	CDS	22651037	22651116	.	+	0	Parent=Os09t0567366-02
Chr09	irgsp1_rep	CDS	22651192	22651303	.	+	1	Parent=Os09t0567366-02
Chr09	irgsp1_rep	CDS	22651385	22651504	.	+	0	Parent=Os09t0567366-02
Chr09	irgsp1_rep	CDS	22651629	22651811	.	+	0	Parent=Os09t0567366-02
Chr09	irgsp1_rep	three_prime_UTR	22651812	22652058	.	+	.	Parent=Os09t0567366-02
Chr09	irgsp1_rep	mRNA	22650664	22652057	.	+	.	ID=Os09t0567366-03;Name=Os09t0567366-03;Locus_id=Os09g0567366;Note=Similar to Aldo-keto reductase/ oxidoreductase.;Transcript_evidence=AK121487 (DDBJ%2C Best hit);ORF_evidence=B6U2Y9 (UniProt);InterPro=Aldo/keto reductase (IPR001395),NADP-dependent oxidoreductase domain (IPR023210);NIAS_FLcDNA=J023150I20;Expression=AK121487;TENOR=Os09t0567366-03;KEGG=Os09t0567366-03
Chr09	irgsp1_rep	five_prime_UTR	22650664	22650665	.	+	.	Parent=Os09t0567366-03
Chr09	irgsp1_rep	CDS	22650666	22650729	.	+	0	Parent=Os09t0567366-03
Chr09	irgsp1_rep	CDS	22650851	22650939	.	+	2	Parent=Os09t0567366-03
Chr09	irgsp1_rep	CDS	22651037	22651116	.	+	0	Parent=Os09t0567366-03
Chr09	irgsp1_rep	CDS	22651192	22651303	.	+	1	Parent=Os09t0567366-03
Chr09	irgsp1_rep	CDS	22651385	22651504	.	+	0	Parent=Os09t0567366-03
Chr09	irgsp1_rep	CDS	22651629	22651811	.	+	0	Parent=Os09t0567366-03
Chr09	irgsp1_rep	three_prime_UTR	22651812	22652057	.	+	.	Parent=Os09t0567366-03
Chr09	irgsp1_rep	mRNA	22654004	22657046	.	+	.	ID=Os09t0567400-01;Name=Os09t0567400-01;Locus_id=Os09g0567400;RAP-DB Gene Symbol Synonym(s)=AHP2%2C OHP2%2C HPt%2C OsAHP2 Hpt3%2C Ohp2%2C OsHP1%2C OsHpt3;RAP-DB Gene Name Synonym(s)=HISTIDINE CONTAINING PHOSPHOTRANSMITTER 2%2C histidine containing phosphotransmitter%2C authentic His-containing phosphotransfer protein 2;CGSNL Gene Symbol=AHP2;CGSNL Gene Name=HISTIDINE CONTAINING PHOSPHOTRANSMITTER 2;Oryzabase Gene Symbol Synonym(s)=OHP2%2C HPt%2C OsAHP2 Hpt3%2C Ohp2%2C OsHP1%2C OsHpt3;Oryzabase Gene Name Synonym(s)=histidine containing phosphotransmitter%2C authentic His-containing phosphotransfer protein 2;Note=Histidine phosphotransfer protein%2C Cytokinin signaling and stress response;Transcript_evidence=AK072521;ORF_evidence=Q6VAK4;GO=Biological Process: phosphorelay signal transduction system (GO:0000160),Molecular Function: signal transducer activity (GO:0004871);InterPro=Signal transduction histidine kinase%2C phosphotransfer (Hpt) domain (IPR008207);NIAS_FLcDNA=J023131B06;Manual Curation=May 8%2C 2014;Literature_PMID=24578505;Oryzabase=8147;TENOR=Os09t0567400-01;KEGG=Os09t0567400-01
Chr09	irgsp1_rep	five_prime_UTR	22654004	22654099	.	+	.	Parent=Os09t0567400-01
Chr09	irgsp1_rep	CDS	22654100	22654159	.	+	0	Parent=Os09t0567400-01
Chr09	irgsp1_rep	CDS	22654273	22654406	.	+	0	Parent=Os09t0567400-01
Chr09	irgsp1_rep	CDS	22654555	22654623	.	+	1	Parent=Os09t0567400-01
Chr09	irgsp1_rep	CDS	22655373	22655444	.	+	1	Parent=Os09t0567400-01
Chr09	irgsp1_rep	CDS	22656017	22656089	.	+	1	Parent=Os09t0567400-01
Chr09	irgsp1_rep	CDS	22656547	22656588	.	+	0	Parent=Os09t0567400-01
Chr09	irgsp1_rep	three_prime_UTR	22656589	22657046	.	+	.	Parent=Os09t0567400-01
Chr09	irgsp1_rep	mRNA	22654080	22657018	.	+	.	ID=Os09t0567400-02;Name=Os09t0567400-02;Locus_id=Os09g0567400;CGSNL Gene Symbol=AHP2;CGSNL Gene Name=HISTIDINE CONTAINING PHOSPHOTRANSMITTER 2;Oryzabase Gene Symbol Synonym(s)=OHP2%2C HPt%2C OsAHP2 Hpt3%2C Ohp2%2C OsHP1%2C OsHpt3;Oryzabase Gene Name Synonym(s)=histidine containing phosphotransmitter%2C authentic His-containing phosphotransfer protein 2;Note=Similar to Histidine-containing phosphotransfer protein.;Transcript_evidence=AK104879 (DDBJ%2C Best hit);ORF_evidence=Q6VAK4 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Molecular Function: signal transducer activity (GO:0004871);InterPro=Signal transduction histidine kinase%2C phosphotransfer (Hpt) domain (IPR008207);NIAS_FLcDNA=001-044-F01;Oryzabase=8147;TENOR=Os09t0567400-02;KEGG=Os09t0567400-02
Chr09	irgsp1_rep	five_prime_UTR	22654080	22654099	.	+	.	Parent=Os09t0567400-02
Chr09	irgsp1_rep	CDS	22654100	22654159	.	+	0	Parent=Os09t0567400-02
Chr09	irgsp1_rep	CDS	22654273	22654406	.	+	0	Parent=Os09t0567400-02
Chr09	irgsp1_rep	CDS	22654555	22654623	.	+	1	Parent=Os09t0567400-02
Chr09	irgsp1_rep	CDS	22655373	22655444	.	+	1	Parent=Os09t0567400-02
Chr09	irgsp1_rep	CDS	22656017	22656089	.	+	1	Parent=Os09t0567400-02
Chr09	irgsp1_rep	CDS	22656547	22656588	.	+	0	Parent=Os09t0567400-02
Chr09	irgsp1_rep	three_prime_UTR	22656589	22657018	.	+	.	Parent=Os09t0567400-02
Chr09	irgsp1_rep	mRNA	22660725	22665351	.	+	.	ID=Os09t0567500-01;Name=Os09t0567500-01;Locus_id=Os09g0567500;Note=Similar to Fatty acyl coA reductase.;Transcript_evidence=AK071956 (DDBJ%2C Best hit);ORF_evidence=Q8L4V2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620);InterPro=Male sterility (IPR004262),Male sterility%2C NAD-binding (IPR013120),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013084H10;Oryzabase=23069;Expression=AK071956;TENOR=Os09t0567500-01;KEGG=Os09t0567500-01 (EC:1.2.1.-)
Chr09	irgsp1_rep	five_prime_UTR	22660725	22660906	.	+	.	Parent=Os09t0567500-01
Chr09	irgsp1_rep	CDS	22660907	22660997	.	+	0	Parent=Os09t0567500-01
Chr09	irgsp1_rep	CDS	22661127	22661230	.	+	2	Parent=Os09t0567500-01
Chr09	irgsp1_rep	CDS	22663468	22663667	.	+	0	Parent=Os09t0567500-01
Chr09	irgsp1_rep	CDS	22663754	22663854	.	+	1	Parent=Os09t0567500-01
Chr09	irgsp1_rep	CDS	22663946	22664400	.	+	2	Parent=Os09t0567500-01
Chr09	irgsp1_rep	CDS	22664474	22665040	.	+	0	Parent=Os09t0567500-01
Chr09	irgsp1_rep	three_prime_UTR	22665041	22665351	.	+	.	Parent=Os09t0567500-01
Chr09	irgsp1_rep	mRNA	22661159	22665338	.	+	.	ID=Os09t0567500-02;Name=Os09t0567500-02;Locus_id=Os09g0567500;Note=Similar to Fatty acyl coA reductase.;Transcript_evidence=AK061142 (DDBJ%2C Best hit);ORF_evidence=Q8L4V2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620);InterPro=Male sterility (IPR004262),Male sterility%2C NAD-binding (IPR013120),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=006-208-C05;Oryzabase=23069;Expression=AK061142;TENOR=Os09t0567500-02;KEGG=Os09t0567500-02 (EC:1.2.1.-)
Chr09	irgsp1_rep	CDS	22661159	22661230	.	+	0	Parent=Os09t0567500-02
Chr09	irgsp1_rep	CDS	22663468	22663667	.	+	0	Parent=Os09t0567500-02
Chr09	irgsp1_rep	CDS	22663754	22663854	.	+	1	Parent=Os09t0567500-02
Chr09	irgsp1_rep	CDS	22663946	22664400	.	+	2	Parent=Os09t0567500-02
Chr09	irgsp1_rep	CDS	22664474	22665040	.	+	0	Parent=Os09t0567500-02
Chr09	irgsp1_rep	three_prime_UTR	22665041	22665338	.	+	.	Parent=Os09t0567500-02
Chr09	irgsp1_rep	mRNA	22662967	22665103	.	-	.	ID=Os09t0567600-01;Name=Os09t0567600-01;Locus_id=Os09g0567600;Note=Hypothetical protein.;Transcript_evidence=AK106807 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-116-C06;Expression=AK106807;TENOR=Os09t0567600-01;KEGG=Os09t0567600-01
Chr09	irgsp1_rep	five_prime_UTR	22665062	22665103	.	-	.	Parent=Os09t0567600-01
Chr09	irgsp1_rep	CDS	22664534	22665061	.	-	0	Parent=Os09t0567600-01
Chr09	irgsp1_rep	three_prime_UTR	22664026	22664533	.	-	.	Parent=Os09t0567600-01
Chr09	irgsp1_rep	three_prime_UTR	22663797	22663859	.	-	.	Parent=Os09t0567600-01
Chr09	irgsp1_rep	three_prime_UTR	22662967	22663684	.	-	.	Parent=Os09t0567600-01
Chr09	irgsp1_rep	mRNA	22666388	22671344	.	+	.	ID=Os09t0567700-01;Name=Os09t0567700-01;Locus_id=Os09g0567700;Oryzabase Gene Symbol Synonym(s)=OsWD40-174%2C WD40-174;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK065913 (DDBJ%2C Best hit);ORF_evidence=NP_001105835.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),TUP1-like enhancer of split (IPR011494),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J013044E15;Oryzabase=10855;Expression=AK065913;TENOR=Os09t0567700-01;KEGG=Os09t0567700-01
Chr09	irgsp1_rep	five_prime_UTR	22666388	22666702	.	+	.	Parent=Os09t0567700-01
Chr09	irgsp1_rep	CDS	22666703	22666810	.	+	0	Parent=Os09t0567700-01
Chr09	irgsp1_rep	CDS	22667138	22667413	.	+	0	Parent=Os09t0567700-01
Chr09	irgsp1_rep	CDS	22667561	22667812	.	+	0	Parent=Os09t0567700-01
Chr09	irgsp1_rep	CDS	22667937	22668334	.	+	0	Parent=Os09t0567700-01
Chr09	irgsp1_rep	CDS	22668423	22669416	.	+	1	Parent=Os09t0567700-01
Chr09	irgsp1_rep	CDS	22669594	22669804	.	+	0	Parent=Os09t0567700-01
Chr09	irgsp1_rep	CDS	22669910	22670144	.	+	2	Parent=Os09t0567700-01
Chr09	irgsp1_rep	CDS	22670269	22670391	.	+	1	Parent=Os09t0567700-01
Chr09	irgsp1_rep	CDS	22670585	22670705	.	+	1	Parent=Os09t0567700-01
Chr09	irgsp1_rep	CDS	22670811	22671020	.	+	0	Parent=Os09t0567700-01
Chr09	irgsp1_rep	three_prime_UTR	22671021	22671344	.	+	.	Parent=Os09t0567700-01
Chr09	irgsp1_rep	mRNA	22673075	22675298	.	-	.	ID=Os09t0567800-00;Name=Os09t0567800-00;Locus_id=Os09g0567800;CGSNL Gene Symbol=GELP101;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 101;Oryzabase Gene Symbol Synonym(s)=OsGELP101;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 101;Note=Hypothetical conserved gene.;Transcript_evidence=CT835822 (DDBJ%2C Best hit);ORF_evidence=NP_187604.1 (RefSeq);Oryzabase=11051;TENOR=Os09t0567800-00;KEGG=Os09t0567800-00
Chr09	irgsp1_rep	five_prime_UTR	22675274	22675298	.	-	.	Parent=Os09t0567800-00
Chr09	irgsp1_rep	CDS	22675177	22675273	.	-	0	Parent=Os09t0567800-00
Chr09	irgsp1_rep	CDS	22674780	22675055	.	-	2	Parent=Os09t0567800-00
Chr09	irgsp1_rep	CDS	22673299	22673303	.	-	2	Parent=Os09t0567800-00
Chr09	irgsp1_rep	three_prime_UTR	22673075	22673298	.	-	.	Parent=Os09t0567800-00
Chr09	irgsp1_rep	mRNA	22677560	22680264	.	-	.	ID=Os09t0567900-01;Name=Os09t0567900-01;Locus_id=Os09g0567900;Note=Inosine/uridine-preferring nucleoside hydrolase domain containing protein.;Transcript_evidence=AK061415 (DDBJ%2C Best hit);ORF_evidence=B6T563 (UniProt);InterPro=Inosine/uridine-preferring nucleoside hydrolase domain (IPR001910),Inosine/uridine-preferring nucleoside hydrolase (IPR023186);NIAS_FLcDNA=006-306-D09;Expression=AK061415;TENOR=Os09t0567900-01;KEGG=Os09t0567900-01
Chr09	irgsp1_rep	five_prime_UTR	22680177	22680264	.	-	.	Parent=Os09t0567900-01
Chr09	irgsp1_rep	CDS	22680083	22680176	.	-	0	Parent=Os09t0567900-01
Chr09	irgsp1_rep	CDS	22679871	22679986	.	-	2	Parent=Os09t0567900-01
Chr09	irgsp1_rep	CDS	22679707	22679766	.	-	0	Parent=Os09t0567900-01
Chr09	irgsp1_rep	CDS	22679094	22679279	.	-	0	Parent=Os09t0567900-01
Chr09	irgsp1_rep	CDS	22678885	22678989	.	-	0	Parent=Os09t0567900-01
Chr09	irgsp1_rep	CDS	22678451	22678547	.	-	0	Parent=Os09t0567900-01
Chr09	irgsp1_rep	CDS	22678230	22678337	.	-	2	Parent=Os09t0567900-01
Chr09	irgsp1_rep	CDS	22678004	22678139	.	-	2	Parent=Os09t0567900-01
Chr09	irgsp1_rep	CDS	22677789	22677900	.	-	1	Parent=Os09t0567900-01
Chr09	irgsp1_rep	three_prime_UTR	22677560	22677788	.	-	.	Parent=Os09t0567900-01
Chr09	irgsp1_rep	mRNA	22682528	22686735	.	+	.	ID=Os09t0568000-01;Name=Os09t0568000-01;Locus_id=Os09g0568000;Note=Single-stranded nucleic acid binding R3H domain containing protein.;Transcript_evidence=AK068829 (DDBJ%2C Best hit);ORF_evidence=A2Z474 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Single-stranded nucleic acid binding R3H (IPR001374),SUZ domain (IPR024771),R3H domain-containing protein%2C viridiplantae (IPR024773);NIAS_FLcDNA=J013160I10;Expression=AK068829;TENOR=Os09t0568000-01;KEGG=Os09t0568000-01
Chr09	irgsp1_rep	five_prime_UTR	22682528	22682764	.	+	.	Parent=Os09t0568000-01
Chr09	irgsp1_rep	CDS	22682765	22682993	.	+	0	Parent=Os09t0568000-01
Chr09	irgsp1_rep	CDS	22683895	22684609	.	+	2	Parent=Os09t0568000-01
Chr09	irgsp1_rep	CDS	22685027	22685399	.	+	1	Parent=Os09t0568000-01
Chr09	irgsp1_rep	CDS	22685790	22685840	.	+	0	Parent=Os09t0568000-01
Chr09	irgsp1_rep	three_prime_UTR	22685841	22686291	.	+	.	Parent=Os09t0568000-01
Chr09	irgsp1_rep	three_prime_UTR	22686369	22686735	.	+	.	Parent=Os09t0568000-01
Chr09	irgsp1_rep	mRNA	22684003	22687730	.	+	.	ID=Os09t0568000-02;Name=Os09t0568000-02;Locus_id=Os09g0568000;Note=SUZ domain domain containing protein.;Transcript_evidence=AK120601 (DDBJ%2C Best hit);ORF_evidence=Q652Q6 (UniProt);InterPro=SUZ domain (IPR024771),R3H domain-containing protein%2C viridiplantae (IPR024773);NIAS_FLcDNA=J013149K01;TENOR=Os09t0568000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	22684003	22684004	.	+	.	Parent=Os09t0568000-02
Chr09	irgsp1_rep	CDS	22684005	22684609	.	+	0	Parent=Os09t0568000-02
Chr09	irgsp1_rep	CDS	22685027	22685399	.	+	1	Parent=Os09t0568000-02
Chr09	irgsp1_rep	CDS	22685790	22685840	.	+	0	Parent=Os09t0568000-02
Chr09	irgsp1_rep	three_prime_UTR	22685841	22686291	.	+	.	Parent=Os09t0568000-02
Chr09	irgsp1_rep	three_prime_UTR	22686369	22686527	.	+	.	Parent=Os09t0568000-02
Chr09	irgsp1_rep	three_prime_UTR	22686796	22687250	.	+	.	Parent=Os09t0568000-02
Chr09	irgsp1_rep	three_prime_UTR	22687366	22687730	.	+	.	Parent=Os09t0568000-02
Chr09	irgsp1_rep	mRNA	22684497	22686712	.	+	.	ID=Os09t0568000-03;Name=Os09t0568000-03;Locus_id=Os09g0568000;Note=Conserved hypothetical protein.;Transcript_evidence=AK104856 (DDBJ%2C Best hit);ORF_evidence=Q652Q6 (UniProt);NIAS_FLcDNA=001-043-C04;TENOR=Os09t0568000-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	22684497	22684973	.	+	.	Parent=Os09t0568000-03
Chr09	irgsp1_rep	CDS	22684974	22685399	.	+	0	Parent=Os09t0568000-03
Chr09	irgsp1_rep	CDS	22685790	22685840	.	+	0	Parent=Os09t0568000-03
Chr09	irgsp1_rep	three_prime_UTR	22685841	22686291	.	+	.	Parent=Os09t0568000-03
Chr09	irgsp1_rep	three_prime_UTR	22686369	22686712	.	+	.	Parent=Os09t0568000-03
Chr09	irgsp1_rep	mRNA	22682629	22686212	.	-	.	ID=Os09t0568050-00;Name=Os09t0568050-00;Locus_id=Os09g0568050;Note=Hypothetical protein.;Transcript_evidence=tplb0025f09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0568050-00
Chr09	irgsp1_rep	five_prime_UTR	22685900	22686212	.	-	.	Parent=Os09t0568050-00
Chr09	irgsp1_rep	CDS	22685806	22685899	.	-	0	Parent=Os09t0568050-00
Chr09	irgsp1_rep	CDS	22685279	22685421	.	-	2	Parent=Os09t0568050-00
Chr09	irgsp1_rep	three_prime_UTR	22685023	22685278	.	-	.	Parent=Os09t0568050-00
Chr09	irgsp1_rep	three_prime_UTR	22683891	22684605	.	-	.	Parent=Os09t0568050-00
Chr09	irgsp1_rep	three_prime_UTR	22682629	22682989	.	-	.	Parent=Os09t0568050-00
Chr09	irgsp1_rep	mRNA	22688087	22689596	.	+	.	ID=Os09t0568100-00;Name=Os09t0568100-00;Locus_id=Os09g0568100;Note=Conserved hypothetical protein.;Transcript_evidence=FP092518 (DDBJ);ORF_evidence=B9G564 (UniProt);TENOR=Os09t0568100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	22688087	22688088	.	+	.	Parent=Os09t0568100-00
Chr09	irgsp1_rep	CDS	22688089	22688286	.	+	0	Parent=Os09t0568100-00
Chr09	irgsp1_rep	CDS	22688946	22689157	.	+	0	Parent=Os09t0568100-00
Chr09	irgsp1_rep	CDS	22689244	22689253	.	+	1	Parent=Os09t0568100-00
Chr09	irgsp1_rep	three_prime_UTR	22689254	22689596	.	+	.	Parent=Os09t0568100-00
Chr09	irgsp1_rep	mRNA	22690177	22691820	.	-	.	ID=Os09t0568200-01;Name=Os09t0568200-01;Locus_id=Os09g0568200;CGSNL Gene Symbol=HAP3L;CGSNL Gene Name=HAP3L SUBUNIT OF CCAAT-BOX BINDING COMPLEX;Oryzabase Gene Symbol Synonym(s)=OsHAP3L;Note=Similar to DNA polymerase epsilon subunit 3.;Transcript_evidence=AK242634 (DDBJ%2C Best hit);ORF_evidence=NP_001149275.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Transcription factor CBF/NF-Y/archaeal histone (IPR003958),Histone-fold (IPR009072);NIAS_FLcDNA=J090023D18;Oryzabase=20923;TENOR=Os09t0568200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	22691754	22691820	.	-	.	Parent=Os09t0568200-01
Chr09	irgsp1_rep	CDS	22691587	22691753	.	-	0	Parent=Os09t0568200-01
Chr09	irgsp1_rep	CDS	22690973	22691091	.	-	1	Parent=Os09t0568200-01
Chr09	irgsp1_rep	CDS	22690482	22690618	.	-	2	Parent=Os09t0568200-01
Chr09	irgsp1_rep	three_prime_UTR	22690177	22690481	.	-	.	Parent=Os09t0568200-01
Chr09	irgsp1_rep	mRNA	22692732	22694212	.	-	.	ID=Os09t0568266-00;Name=Os09t0568266-00;Locus_id=Os09g0568266;Note=Non-protein coding transcript.;Transcript_evidence=BT018987 (DDBJ);ORF_evidence=NONE;TENOR=Os09t0568266-00
Chr09	irgsp1_rep	exon	22694129	22694212	.	-	.	Parent=Os09t0568266-00
Chr09	irgsp1_rep	exon	22692989	22693155	.	-	.	Parent=Os09t0568266-00
Chr09	irgsp1_rep	exon	22692732	22692884	.	-	.	Parent=Os09t0568266-00
Chr09	irgsp1_rep	mRNA	22693865	22694814	.	+	.	ID=Os09t0568400-01;Name=Os09t0568400-01;Locus_id=Os09g0568400;Oryzabase Gene Symbol Synonym(s)=Ub-CEP52-2;Oryzabase Gene Name Synonym(s)=Ubiquitin%2C ubiquitin fused to CEP52 gene-2;Note=Similar to 60S ribosomal protein L40 (CEP52).;Transcript_evidence=AK059386 (DDBJ%2C Best hit);ORF_evidence=Q7XYD4 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L40e (IPR001975);NIAS_FLcDNA=001-026-G12;Oryzabase=17712;Expression=AK059386;TENOR=Os09t0568400-01;KEGG=Os09t0568400-01
Chr09	irgsp1_rep	five_prime_UTR	22693865	22694103	.	+	.	Parent=Os09t0568400-01
Chr09	irgsp1_rep	CDS	22694104	22694208	.	+	0	Parent=Os09t0568400-01
Chr09	irgsp1_rep	CDS	22694572	22694601	.	+	0	Parent=Os09t0568400-01
Chr09	irgsp1_rep	three_prime_UTR	22694602	22694814	.	+	.	Parent=Os09t0568400-01
Chr09	irgsp1_rep	mRNA	22694142	22694815	.	+	.	ID=Os09t0568400-02;Name=Os09t0568400-02;Locus_id=Os09g0568400;Oryzabase Gene Symbol Synonym(s)=Ub-CEP52-2;Oryzabase Gene Name Synonym(s)=Ubiquitin%2C ubiquitin fused to CEP52 gene-2;Note=Similar to Ubiquitin/ribosomal fusion protein (Fragment).;Transcript_evidence=AK060445 (DDBJ%2C Best hit);ORF_evidence=Q7XYD4 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L40e (IPR001975);NIAS_FLcDNA=001-011-E11;Oryzabase=17712;Expression=AK060445;TENOR=Os09t0568400-02;KEGG=Os09t0568400-02
Chr09	irgsp1_rep	five_prime_UTR	22694142	22694142	.	+	.	Parent=Os09t0568400-02
Chr09	irgsp1_rep	CDS	22694143	22694208	.	+	0	Parent=Os09t0568400-02
Chr09	irgsp1_rep	CDS	22694572	22694601	.	+	0	Parent=Os09t0568400-02
Chr09	irgsp1_rep	three_prime_UTR	22694602	22694815	.	+	.	Parent=Os09t0568400-02
Chr09	irgsp1_rep	mRNA	22695120	22696145	.	-	.	ID=Os09t0568500-01;Name=Os09t0568500-01;Locus_id=Os09g0568500;CGSNL Gene Symbol=GLP9-1;CGSNL Gene Name=GERMIN-LIKE PROTEIN 9-1;Oryzabase Gene Symbol Synonym(s)=OsGLP9-1;Oryzabase Gene Name Synonym(s)=Germin-like protein 9-1;Note=Germin family protein.;Transcript_evidence=AK108987 (DDBJ%2C Best hit);ORF_evidence=Q84XR7 (UniProt);GO=Cellular Component: apoplast (GO:0048046),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710);NIAS_FLcDNA=002-153-F08;Oryzabase=21430;Expression=AK108987;TENOR=Os09t0568500-01;KEGG=Os09t0568500-01
Chr09	irgsp1_rep	five_prime_UTR	22696084	22696145	.	-	.	Parent=Os09t0568500-01
Chr09	irgsp1_rep	CDS	22695340	22696083	.	-	0	Parent=Os09t0568500-01
Chr09	irgsp1_rep	three_prime_UTR	22695120	22695339	.	-	.	Parent=Os09t0568500-01
Chr09	irgsp1_rep	mRNA	22697745	22698389	.	-	.	ID=Os09t0568600-00;Name=Os09t0568600-00;Locus_id=Os09g0568600;CGSNL Gene Symbol=GLP9-2;CGSNL Gene Name=GERMIN-LIKE PROTEIN 9-2;Oryzabase Gene Symbol Synonym(s)=OsGLP9-2;Oryzabase Gene Name Synonym(s)=Germin-like protein 9-2;Note=Putative germin-like protein 9-2.;Transcript_evidence=Q652Q0 (UniProt);ORF_evidence=Q652Q0 (UniProt);GO=Cellular Component: apoplast (GO:0048046),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710);Oryzabase=21431;TENOR=Os09t0568600-00
Chr09	irgsp1_rep	CDS	22697745	22698389	.	-	0	Parent=Os09t0568600-00
Chr09	irgsp1_rep	mRNA	22699925	22700959	.	-	.	ID=Os09t0568700-01;Name=Os09t0568700-01;Locus_id=Os09g0568700;CGSNL Gene Symbol=GLP9-3;CGSNL Gene Name=GERMIN-LIKE PROTEIN 9-3;Oryzabase Gene Symbol Synonym(s)=OsGLP9-3;Oryzabase Gene Name Synonym(s)=Germin-like protein 9-3;Note=RmlC-like jelly roll fold domain containing protein.;Transcript_evidence=AK109010 (DDBJ%2C Best hit);ORF_evidence=Q84XR7 (UniProt);GO=Cellular Component: apoplast (GO:0048046),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710);NIAS_FLcDNA=002-153-H10;Oryzabase=21432;Expression=AK109010;TENOR=Os09t0568700-01;KEGG=Os09t0568700-01
Chr09	irgsp1_rep	five_prime_UTR	22700866	22700959	.	-	.	Parent=Os09t0568700-01
Chr09	irgsp1_rep	CDS	22700221	22700865	.	-	0	Parent=Os09t0568700-01
Chr09	irgsp1_rep	three_prime_UTR	22699925	22700220	.	-	.	Parent=Os09t0568700-01
Chr09	irgsp1_rep	mRNA	22701807	22703104	.	-	.	ID=Os09t0568800-01;Name=Os09t0568800-01;Locus_id=Os09g0568800;Note=Similar to Ribosomal protein S25 (40S ribosomal 25S subunit).;Transcript_evidence=AK059234 (DDBJ%2C Best hit);ORF_evidence=NP_001148017.1 (RefSeq);InterPro=Ribosomal protein S25 (IPR004977);NIAS_FLcDNA=001-024-E11;Expression=AK059234;TENOR=Os09t0568800-01;KEGG=Os09t0568800-01
Chr09	irgsp1_rep	five_prime_UTR	22703044	22703104	.	-	.	Parent=Os09t0568800-01
Chr09	irgsp1_rep	CDS	22703041	22703043	.	-	0	Parent=Os09t0568800-01
Chr09	irgsp1_rep	CDS	22702886	22702960	.	-	0	Parent=Os09t0568800-01
Chr09	irgsp1_rep	CDS	22702659	22702793	.	-	0	Parent=Os09t0568800-01
Chr09	irgsp1_rep	CDS	22701929	22702042	.	-	0	Parent=Os09t0568800-01
Chr09	irgsp1_rep	three_prime_UTR	22701807	22701928	.	-	.	Parent=Os09t0568800-01
Chr09	irgsp1_rep	mRNA	22704849	22705586	.	+	.	ID=Os09t0568900-01;Name=Os09t0568900-01;Locus_id=Os09g0568900;Oryzabase Gene Symbol Synonym(s)=IF1-2;Oryzabase Gene Name Synonym(s)=F1F0-ATPase inhibitor protein 1-2;Note=Similar to predicted protein.;Transcript_evidence=AK059442 (DDBJ%2C Best hit);ORF_evidence=XP_002879140.1 (RefSeq);NIAS_FLcDNA=001-027-H09;Oryzabase=14492;Expression=AK059442;TENOR=Os09t0568900-01;KEGG=Os09t0568900-01
Chr09	irgsp1_rep	five_prime_UTR	22704849	22704850	.	+	.	Parent=Os09t0568900-01
Chr09	irgsp1_rep	CDS	22704851	22704889	.	+	0	Parent=Os09t0568900-01
Chr09	irgsp1_rep	CDS	22705151	22705360	.	+	0	Parent=Os09t0568900-01
Chr09	irgsp1_rep	three_prime_UTR	22705361	22705586	.	+	.	Parent=Os09t0568900-01
Chr09	irgsp1_rep	mRNA	22707588	22709477	.	-	.	ID=Os09t0569000-01;Name=Os09t0569000-01;Locus_id=Os09g0569000;Note=Hypothetical gene.;Transcript_evidence=AK108627 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-147-E04;Expression=AK108627;TENOR=Os09t0569000-01;KEGG=Os09t0569000-01
Chr09	irgsp1_rep	five_prime_UTR	22709476	22709477	.	-	.	Parent=Os09t0569000-01
Chr09	irgsp1_rep	CDS	22709401	22709475	.	-	0	Parent=Os09t0569000-01
Chr09	irgsp1_rep	CDS	22709077	22709289	.	-	0	Parent=Os09t0569000-01
Chr09	irgsp1_rep	three_prime_UTR	22707588	22709076	.	-	.	Parent=Os09t0569000-01
Chr09	irgsp1_rep	mRNA	22707659	22709479	.	+	.	ID=Os09t0569100-01;Name=Os09t0569100-01;Locus_id=Os09g0569100;Oryzabase Gene Symbol Synonym(s)=EIP6;Oryzabase Gene Name Synonym(s)=EBR1-interacting protein 6;Note=Haloacid dehalogenase-like hydrolase domain containing protein.;Transcript_evidence=AK071860 (DDBJ%2C Best hit);ORF_evidence=B4FI81 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity (GO:0016787);InterPro=Haloacid dehalogenase-like hydrolase (IPR005834),HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 (IPR006402),HAD-like domain (IPR023214);NIAS_FLcDNA=J023117I03;Oryzabase=21993;Expression=AK071860;TENOR=Os09t0569100-01;KEGG=Os09t0569100-01
Chr09	irgsp1_rep	five_prime_UTR	22707659	22707789	.	+	.	Parent=Os09t0569100-01
Chr09	irgsp1_rep	five_prime_UTR	22707968	22708103	.	+	.	Parent=Os09t0569100-01
Chr09	irgsp1_rep	CDS	22708104	22709255	.	+	0	Parent=Os09t0569100-01
Chr09	irgsp1_rep	three_prime_UTR	22709256	22709479	.	+	.	Parent=Os09t0569100-01
Chr09	irgsp1_rep	mRNA	22711950	22712415	.	-	.	ID=Os09t0569151-00;Name=Os09t0569151-00;Locus_id=Os09g0569151;Note=Hypothetical protein.;Transcript_evidence=AK355652 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0569151-00
Chr09	irgsp1_rep	five_prime_UTR	22712414	22712415	.	-	.	Parent=Os09t0569151-00
Chr09	irgsp1_rep	CDS	22712012	22712413	.	-	0	Parent=Os09t0569151-00
Chr09	irgsp1_rep	three_prime_UTR	22711950	22712011	.	-	.	Parent=Os09t0569151-00
Chr09	irgsp1_rep	mRNA	22713282	22716538	.	+	.	ID=Os09t0569200-01;Name=Os09t0569200-01;Locus_id=Os09g0569200;Oryzabase Gene Name Synonym(s)=beta-amylase;Note=Similar to Beta-amylase (EC 3.2.1.2) (1%2C4-alpha-D-glucan maltohydrolase).;Transcript_evidence=AK070300 (DDBJ%2C Best hit);ORF_evidence=B6SVZ0 (UniProt);GO=Biological Process: polysaccharide catabolic process (GO:0000272),Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: beta-amylase activity (GO:0016161),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 14B%2C plant (IPR001371),Glycoside hydrolase%2C family 14 (IPR001554),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 14%2C conserved site (IPR018238);NIAS_FLcDNA=J023048N01;Oryzabase=21707;Expression=AK070300;TENOR=Os09t0569200-01;KEGG=Os09t0569200-01 (EC:3.2.1.2)
Chr09	irgsp1_rep	five_prime_UTR	22713282	22713299	.	+	.	Parent=Os09t0569200-01
Chr09	irgsp1_rep	CDS	22713300	22713527	.	+	0	Parent=Os09t0569200-01
Chr09	irgsp1_rep	CDS	22713614	22713694	.	+	0	Parent=Os09t0569200-01
Chr09	irgsp1_rep	CDS	22713771	22713974	.	+	0	Parent=Os09t0569200-01
Chr09	irgsp1_rep	CDS	22714160	22714354	.	+	0	Parent=Os09t0569200-01
Chr09	irgsp1_rep	CDS	22714459	22714623	.	+	0	Parent=Os09t0569200-01
Chr09	irgsp1_rep	CDS	22714896	22715156	.	+	0	Parent=Os09t0569200-01
Chr09	irgsp1_rep	CDS	22715303	22715521	.	+	0	Parent=Os09t0569200-01
Chr09	irgsp1_rep	CDS	22715680	22715899	.	+	0	Parent=Os09t0569200-01
Chr09	irgsp1_rep	CDS	22715986	22716014	.	+	2	Parent=Os09t0569200-01
Chr09	irgsp1_rep	three_prime_UTR	22716015	22716538	.	+	.	Parent=Os09t0569200-01
Chr09	irgsp1_rep	mRNA	22716748	22719930	.	-	.	ID=Os09t0569300-01;Name=Os09t0569300-01;Locus_id=Os09g0569300;Note=Similar to calmodulin-binding heat-shock protein.;Transcript_evidence=AK069587 (DDBJ%2C Best hit);ORF_evidence=NP_001149987.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: lipid catabolic process (GO:0016042),Molecular Function: carboxylesterase activity (GO:0004091),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921),Mono-/di-acylglycerol lipase%2C N-terminal (IPR005592);NIAS_FLcDNA=J023019G10;TENOR=Os09t0569300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	22719687	22719930	.	-	.	Parent=Os09t0569300-01
Chr09	irgsp1_rep	CDS	22718865	22719686	.	-	0	Parent=Os09t0569300-01
Chr09	irgsp1_rep	three_prime_UTR	22717988	22718864	.	-	.	Parent=Os09t0569300-01
Chr09	irgsp1_rep	three_prime_UTR	22717394	22717529	.	-	.	Parent=Os09t0569300-01
Chr09	irgsp1_rep	three_prime_UTR	22716748	22717228	.	-	.	Parent=Os09t0569300-01
Chr09	irgsp1_rep	mRNA	22720434	22727500	.	-	.	ID=Os09t0569400-01;Name=Os09t0569400-01;Locus_id=Os09g0569400;Note=Beta-lactamase-like domain containing protein.;Transcript_evidence=AK070608 (DDBJ%2C Best hit),AK063384 (DDBJ%2C Best hit);ORF_evidence=B6U1S6 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Beta-lactamase-like (IPR001279),RNA-metabolising metallo-beta-lactamase (IPR011108),Beta-Casp domain (IPR022712);NIAS_FLcDNA=J023063D15,001-114-G05;Expression=AK070608;TENOR=Os09t0569400-01;KEGG=Os09t0569400-01
Chr09	irgsp1_rep	five_prime_UTR	22727423	22727500	.	-	.	Parent=Os09t0569400-01
Chr09	irgsp1_rep	CDS	22727274	22727422	.	-	0	Parent=Os09t0569400-01
Chr09	irgsp1_rep	CDS	22726140	22726308	.	-	1	Parent=Os09t0569400-01
Chr09	irgsp1_rep	CDS	22725960	22726056	.	-	0	Parent=Os09t0569400-01
Chr09	irgsp1_rep	CDS	22725764	22725890	.	-	2	Parent=Os09t0569400-01
Chr09	irgsp1_rep	CDS	22725567	22725682	.	-	1	Parent=Os09t0569400-01
Chr09	irgsp1_rep	CDS	22725093	22725187	.	-	2	Parent=Os09t0569400-01
Chr09	irgsp1_rep	CDS	22724857	22725008	.	-	0	Parent=Os09t0569400-01
Chr09	irgsp1_rep	CDS	22724432	22724489	.	-	1	Parent=Os09t0569400-01
Chr09	irgsp1_rep	CDS	22724262	22724369	.	-	0	Parent=Os09t0569400-01
Chr09	irgsp1_rep	CDS	22723637	22723889	.	-	0	Parent=Os09t0569400-01
Chr09	irgsp1_rep	CDS	22723363	22723544	.	-	2	Parent=Os09t0569400-01
Chr09	irgsp1_rep	CDS	22723085	22723180	.	-	0	Parent=Os09t0569400-01
Chr09	irgsp1_rep	CDS	22722891	22722989	.	-	0	Parent=Os09t0569400-01
Chr09	irgsp1_rep	CDS	22722475	22722606	.	-	0	Parent=Os09t0569400-01
Chr09	irgsp1_rep	CDS	22722220	22722264	.	-	0	Parent=Os09t0569400-01
Chr09	irgsp1_rep	CDS	22721339	22721503	.	-	0	Parent=Os09t0569400-01
Chr09	irgsp1_rep	CDS	22720855	22720929	.	-	0	Parent=Os09t0569400-01
Chr09	irgsp1_rep	CDS	22720547	22720645	.	-	0	Parent=Os09t0569400-01
Chr09	irgsp1_rep	three_prime_UTR	22720434	22720546	.	-	.	Parent=Os09t0569400-01
Chr09	irgsp1_rep	mRNA	22727640	22729198	.	+	.	ID=Os09t0569450-01;Name=Os09t0569450-01;Locus_id=Os09g0569450;Note=Conserved hypothetical protein.;Transcript_evidence=AK242543 (DDBJ%2C Best hit);ORF_evidence=NP_001175993.1 (RefSeq);NIAS_FLcDNA=J080318E23;TENOR=Os09t0569450-01;KEGG=Os09t0569450-01
Chr09	irgsp1_rep	five_prime_UTR	22727640	22727846	.	+	.	Parent=Os09t0569450-01
Chr09	irgsp1_rep	CDS	22727847	22727928	.	+	0	Parent=Os09t0569450-01
Chr09	irgsp1_rep	CDS	22728622	22728734	.	+	2	Parent=Os09t0569450-01
Chr09	irgsp1_rep	CDS	22728851	22728931	.	+	0	Parent=Os09t0569450-01
Chr09	irgsp1_rep	three_prime_UTR	22728932	22729198	.	+	.	Parent=Os09t0569450-01
Chr09	irgsp1_rep	mRNA	22736288	22738145	.	-	.	ID=Os09t0569700-01;Name=Os09t0569700-01;Locus_id=Os09g0569700;Note=Conserved hypothetical protein.;Transcript_evidence=AK108778 (DDBJ%2C Best hit);ORF_evidence=NP_001063979.1 (RefSeq);NIAS_FLcDNA=002-151-A02;Expression=AK108778;TENOR=Os09t0569700-01;KEGG=Os09t0569700-01
Chr09	irgsp1_rep	five_prime_UTR	22737295	22738145	.	-	.	Parent=Os09t0569700-01
Chr09	irgsp1_rep	five_prime_UTR	22737156	22737168	.	-	.	Parent=Os09t0569700-01
Chr09	irgsp1_rep	CDS	22736989	22737155	.	-	0	Parent=Os09t0569700-01
Chr09	irgsp1_rep	CDS	22736748	22736865	.	-	1	Parent=Os09t0569700-01
Chr09	irgsp1_rep	CDS	22736536	22736640	.	-	0	Parent=Os09t0569700-01
Chr09	irgsp1_rep	three_prime_UTR	22736288	22736535	.	-	.	Parent=Os09t0569700-01
Chr09	irgsp1_rep	mRNA	22732785	22733591	.	-	.	ID=Os09t0569780-01;Name=Os09t0569780-01;Locus_id=Os09g0569780;Note=Conserved hypothetical protein.;Transcript_evidence=AK241041 (DDBJ%2C Best hit);ORF_evidence=NP_001175963.1 (RefSeq);NIAS_FLcDNA=J065059P08;TENOR=Os09t0569780-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	22732993	22733591	.	-	.	Parent=Os09t0569780-01
Chr09	irgsp1_rep	CDS	22732785	22732992	.	-	0	Parent=Os09t0569780-01
Chr09	irgsp1_rep	mRNA	22736559	22741162	.	+	.	ID=Os09t0569800-00;Name=Os09t0569800-00;Locus_id=Os09g0569800;CGSNL Gene Symbol=RLCK280;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 280;Oryzabase Gene Symbol Synonym(s)=OsPUB52%2C OsRLCK280;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 52%2C U-box protein 52%2C Receptor-like Cytoplasmic Kinase 280;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001063980.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: response to stress (GO:0006950),Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),U box domain (IPR003613),UspA (IPR006016),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Serine/threonine-protein kinase-like domain (IPR017442);Oryzabase=17843;TENOR=Os09t0569800-00;KEGG=Os09t0569800-00
Chr09	irgsp1_rep	CDS	22736559	22736886	.	+	0	Parent=Os09t0569800-00
Chr09	irgsp1_rep	CDS	22737385	22737509	.	+	2	Parent=Os09t0569800-00
Chr09	irgsp1_rep	CDS	22737797	22737909	.	+	0	Parent=Os09t0569800-00
Chr09	irgsp1_rep	CDS	22738314	22738418	.	+	1	Parent=Os09t0569800-00
Chr09	irgsp1_rep	CDS	22738542	22738926	.	+	1	Parent=Os09t0569800-00
Chr09	irgsp1_rep	CDS	22739040	22739171	.	+	0	Parent=Os09t0569800-00
Chr09	irgsp1_rep	CDS	22739375	22739845	.	+	0	Parent=Os09t0569800-00
Chr09	irgsp1_rep	CDS	22739945	22740673	.	+	0	Parent=Os09t0569800-00
Chr09	irgsp1_rep	CDS	22740974	22741162	.	+	0	Parent=Os09t0569800-00
Chr09	irgsp1_rep	mRNA	22739845	22743299	.	-	.	ID=Os09t0569900-01;Name=Os09t0569900-01;Locus_id=Os09g0569900;Note=Hypothetical protein.;Transcript_evidence=AK073081 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033014J23;Expression=AK073081;TENOR=Os09t0569900-01;KEGG=Os09t0569900-01
Chr09	irgsp1_rep	five_prime_UTR	22743142	22743299	.	-	.	Parent=Os09t0569900-01
Chr09	irgsp1_rep	five_prime_UTR	22740613	22740657	.	-	.	Parent=Os09t0569900-01
Chr09	irgsp1_rep	CDS	22740373	22740612	.	-	0	Parent=Os09t0569900-01
Chr09	irgsp1_rep	three_prime_UTR	22739845	22740372	.	-	.	Parent=Os09t0569900-01
Chr09	irgsp1_rep	mRNA	22749994	22752169	.	+	.	ID=Os09t0570000-01;Name=Os09t0570000-01;Locus_id=Os09g0570000;CGSNL Gene Symbol=RLCK281;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 281;Oryzabase Gene Symbol Synonym(s)=OsPUB56%2C OsRLCK281;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 56%2C U-box protein 56%2C Receptor-like Cytoplasmic Kinase 281;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK058797 (DDBJ%2C Best hit);ORF_evidence=Q2HTK4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),U box domain (IPR003613),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-002-H09;Oryzabase=17847;Expression=AK058797;TENOR=Os09t0570000-01;KEGG=Os09t0570000-01
Chr09	irgsp1_rep	CDS	22749994	22750119	.	+	0	Parent=Os09t0570000-01
Chr09	irgsp1_rep	CDS	22750237	22751004	.	+	0	Parent=Os09t0570000-01
Chr09	irgsp1_rep	CDS	22751580	22751768	.	+	0	Parent=Os09t0570000-01
Chr09	irgsp1_rep	three_prime_UTR	22751769	22752169	.	+	.	Parent=Os09t0570000-01
Chr09	irgsp1_rep	mRNA	22755848	22757473	.	+	.	ID=Os09t0570100-01;Name=Os09t0570100-01;Locus_id=Os09g0570100;CGSNL Gene Symbol=RLCK282;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 282;Oryzabase Gene Symbol Synonym(s)=OsRLCK282;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 282;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK061135 (DDBJ%2C Best hit);ORF_evidence=B9G572 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=006-208-B02;Oryzabase=18965;TENOR=Os09t0570100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	22755848	22755849	.	+	.	Parent=Os09t0570100-01
Chr09	irgsp1_rep	CDS	22755850	22755873	.	+	0	Parent=Os09t0570100-01
Chr09	irgsp1_rep	CDS	22756045	22756377	.	+	0	Parent=Os09t0570100-01
Chr09	irgsp1_rep	CDS	22756481	22757215	.	+	0	Parent=Os09t0570100-01
Chr09	irgsp1_rep	three_prime_UTR	22757216	22757473	.	+	.	Parent=Os09t0570100-01
Chr09	irgsp1_rep	mRNA	22756290	22757503	.	+	.	ID=Os09t0570100-02;Name=Os09t0570100-02;Locus_id=Os09g0570100;CGSNL Gene Symbol=RLCK282;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 282;Oryzabase Gene Symbol Synonym(s)=OsRLCK282;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 282;Note=Hypothetical conserved gene.;Transcript_evidence=AK059199 (DDBJ%2C Best hit);ORF_evidence=B9G572 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-024-A07;Oryzabase=18965;Expression=AK059199;TENOR=Os09t0570100-02;KEGG=Os09t0570100-02
Chr09	irgsp1_rep	five_prime_UTR	22756290	22756290	.	+	.	Parent=Os09t0570100-02
Chr09	irgsp1_rep	CDS	22756291	22756377	.	+	0	Parent=Os09t0570100-02
Chr09	irgsp1_rep	CDS	22756481	22757215	.	+	0	Parent=Os09t0570100-02
Chr09	irgsp1_rep	three_prime_UTR	22757216	22757503	.	+	.	Parent=Os09t0570100-02
Chr09	irgsp1_rep	mRNA	22756032	22757187	.	-	.	ID=Os09t0570150-00;Name=Os09t0570150-00;Locus_id=Os09g0570150;Note=Hypothetical conserved gene.;Transcript_evidence=EU953102 (DDBJ);ORF_evidence=B6SK37 (UniProt);TENOR=Os09t0570150-00;KEGG=Os09t0570150-00
Chr09	irgsp1_rep	five_prime_UTR	22757158	22757187	.	-	.	Parent=Os09t0570150-00
Chr09	irgsp1_rep	CDS	22756906	22757157	.	-	0	Parent=Os09t0570150-00
Chr09	irgsp1_rep	three_prime_UTR	22756433	22756905	.	-	.	Parent=Os09t0570150-00
Chr09	irgsp1_rep	three_prime_UTR	22756032	22756277	.	-	.	Parent=Os09t0570150-00
Chr09	irgsp1_rep	mRNA	22758931	22762442	.	+	.	ID=Os09t0570200-01;Name=Os09t0570200-01;Locus_id=Os09g0570200;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK073421 (DDBJ%2C Best hit);ORF_evidence=A2Z489 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J033045B09;Expression=AK073421;TENOR=Os09t0570200-01;KEGG=Os09t0570200-01
Chr09	irgsp1_rep	five_prime_UTR	22758931	22759062	.	+	.	Parent=Os09t0570200-01
Chr09	irgsp1_rep	five_prime_UTR	22759213	22759214	.	+	.	Parent=Os09t0570200-01
Chr09	irgsp1_rep	CDS	22759215	22759382	.	+	0	Parent=Os09t0570200-01
Chr09	irgsp1_rep	CDS	22759597	22759641	.	+	0	Parent=Os09t0570200-01
Chr09	irgsp1_rep	CDS	22759992	22760045	.	+	0	Parent=Os09t0570200-01
Chr09	irgsp1_rep	CDS	22760137	22760241	.	+	0	Parent=Os09t0570200-01
Chr09	irgsp1_rep	CDS	22760327	22760533	.	+	0	Parent=Os09t0570200-01
Chr09	irgsp1_rep	CDS	22760612	22760697	.	+	0	Parent=Os09t0570200-01
Chr09	irgsp1_rep	CDS	22760818	22761725	.	+	1	Parent=Os09t0570200-01
Chr09	irgsp1_rep	CDS	22761961	22762019	.	+	2	Parent=Os09t0570200-01
Chr09	irgsp1_rep	three_prime_UTR	22762020	22762442	.	+	.	Parent=Os09t0570200-01
Chr09	irgsp1_rep	mRNA	22758946	22762537	.	+	.	ID=Os09t0570200-02;Name=Os09t0570200-02;Locus_id=Os09g0570200;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK102035 (DDBJ%2C Best hit);ORF_evidence=A2Z489 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J033081C08;Expression=AK102035;TENOR=Os09t0570200-02;KEGG=Os09t0570200-02
Chr09	irgsp1_rep	five_prime_UTR	22758946	22759062	.	+	.	Parent=Os09t0570200-02
Chr09	irgsp1_rep	five_prime_UTR	22759192	22759214	.	+	.	Parent=Os09t0570200-02
Chr09	irgsp1_rep	CDS	22759215	22759382	.	+	0	Parent=Os09t0570200-02
Chr09	irgsp1_rep	CDS	22759597	22759641	.	+	0	Parent=Os09t0570200-02
Chr09	irgsp1_rep	CDS	22759992	22760045	.	+	0	Parent=Os09t0570200-02
Chr09	irgsp1_rep	CDS	22760137	22760241	.	+	0	Parent=Os09t0570200-02
Chr09	irgsp1_rep	CDS	22760327	22760533	.	+	0	Parent=Os09t0570200-02
Chr09	irgsp1_rep	CDS	22760612	22760697	.	+	0	Parent=Os09t0570200-02
Chr09	irgsp1_rep	CDS	22760818	22761725	.	+	1	Parent=Os09t0570200-02
Chr09	irgsp1_rep	CDS	22761961	22762019	.	+	2	Parent=Os09t0570200-02
Chr09	irgsp1_rep	three_prime_UTR	22762020	22762537	.	+	.	Parent=Os09t0570200-02
Chr09	irgsp1_rep	mRNA	22762865	22766935	.	+	.	ID=Os09t0570300-01;Name=Os09t0570300-01;Locus_id=Os09g0570300;Note=Similar to Short-chain dehydrogenase Tic32.;Transcript_evidence=AK061532 (DDBJ%2C Best hit);ORF_evidence=B4FKX6 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=006-310-E10;Expression=AK061532;TENOR=Os09t0570300-01;KEGG=Os09t0570300-01
Chr09	irgsp1_rep	five_prime_UTR	22762865	22762983	.	+	.	Parent=Os09t0570300-01
Chr09	irgsp1_rep	CDS	22762984	22763330	.	+	0	Parent=Os09t0570300-01
Chr09	irgsp1_rep	CDS	22764183	22764262	.	+	1	Parent=Os09t0570300-01
Chr09	irgsp1_rep	CDS	22764566	22764719	.	+	2	Parent=Os09t0570300-01
Chr09	irgsp1_rep	CDS	22764818	22764896	.	+	1	Parent=Os09t0570300-01
Chr09	irgsp1_rep	CDS	22765603	22765687	.	+	0	Parent=Os09t0570300-01
Chr09	irgsp1_rep	CDS	22766034	22766080	.	+	2	Parent=Os09t0570300-01
Chr09	irgsp1_rep	CDS	22766612	22766770	.	+	0	Parent=Os09t0570300-01
Chr09	irgsp1_rep	three_prime_UTR	22766771	22766935	.	+	.	Parent=Os09t0570300-01
Chr09	irgsp1_rep	mRNA	22762936	22766952	.	+	.	ID=Os09t0570300-02;Name=Os09t0570300-02;Locus_id=Os09g0570300;Note=Similar to Short-chain dehydrogenase Tic32.;Transcript_evidence=AK058687 (DDBJ%2C Best hit);ORF_evidence=B4FKX6 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-019-A11;Expression=AK058687;TENOR=Os09t0570300-02;KEGG=Os09t0570300-02
Chr09	irgsp1_rep	five_prime_UTR	22762936	22762983	.	+	.	Parent=Os09t0570300-02
Chr09	irgsp1_rep	CDS	22762984	22763330	.	+	0	Parent=Os09t0570300-02
Chr09	irgsp1_rep	CDS	22764183	22764262	.	+	1	Parent=Os09t0570300-02
Chr09	irgsp1_rep	CDS	22764566	22764719	.	+	2	Parent=Os09t0570300-02
Chr09	irgsp1_rep	CDS	22764818	22764896	.	+	1	Parent=Os09t0570300-02
Chr09	irgsp1_rep	CDS	22765603	22765687	.	+	0	Parent=Os09t0570300-02
Chr09	irgsp1_rep	CDS	22766034	22766080	.	+	2	Parent=Os09t0570300-02
Chr09	irgsp1_rep	CDS	22766612	22766770	.	+	0	Parent=Os09t0570300-02
Chr09	irgsp1_rep	three_prime_UTR	22766771	22766952	.	+	.	Parent=Os09t0570300-02
Chr09	irgsp1_rep	mRNA	22767376	22771605	.	+	.	ID=Os09t0570400-01;Name=Os09t0570400-01;Locus_id=Os09g0570400;CGSNL Gene Symbol=PT24;CGSNL Gene Name=PHOSPHATE TRANSPORTER 24;Oryzabase Gene Symbol Synonym(s)=OsPT24;Oryzabase Gene Name Synonym(s)=phosphate transporter 24;Note=Major facilitator superfamily protein.;Transcript_evidence=AK065287 (DDBJ%2C Best hit);ORF_evidence=NP_567175.2 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J013002M15;Oryzabase=21406;Expression=AK065287;TENOR=Os09t0570400-01;KEGG=Os09t0570400-01
Chr09	irgsp1_rep	five_prime_UTR	22767376	22767554	.	+	.	Parent=Os09t0570400-01
Chr09	irgsp1_rep	CDS	22767555	22767612	.	+	0	Parent=Os09t0570400-01
Chr09	irgsp1_rep	CDS	22767909	22768447	.	+	2	Parent=Os09t0570400-01
Chr09	irgsp1_rep	CDS	22768581	22768688	.	+	0	Parent=Os09t0570400-01
Chr09	irgsp1_rep	CDS	22768786	22768941	.	+	0	Parent=Os09t0570400-01
Chr09	irgsp1_rep	CDS	22769311	22769526	.	+	0	Parent=Os09t0570400-01
Chr09	irgsp1_rep	CDS	22769734	22769943	.	+	0	Parent=Os09t0570400-01
Chr09	irgsp1_rep	CDS	22770034	22770171	.	+	0	Parent=Os09t0570400-01
Chr09	irgsp1_rep	CDS	22770275	22770376	.	+	0	Parent=Os09t0570400-01
Chr09	irgsp1_rep	CDS	22770484	22770549	.	+	0	Parent=Os09t0570400-01
Chr09	irgsp1_rep	CDS	22770698	22770782	.	+	0	Parent=Os09t0570400-01
Chr09	irgsp1_rep	CDS	22770938	22771035	.	+	2	Parent=Os09t0570400-01
Chr09	irgsp1_rep	three_prime_UTR	22771036	22771605	.	+	.	Parent=Os09t0570400-01
Chr09	irgsp1_rep	mRNA	22771150	22771561	.	+	.	ID=Os09t0570400-02;Name=Os09t0570400-02;Locus_id=Os09g0570400;CGSNL Gene Symbol=PT24;CGSNL Gene Name=PHOSPHATE TRANSPORTER 24;Oryzabase Gene Symbol Synonym(s)=OsPT24;Oryzabase Gene Name Synonym(s)=phosphate transporter 24;Note=Non-protein coding transcript.;Transcript_evidence=AK061710 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-037-G02;Oryzabase=21406;TENOR=Os09t0570400-02
Chr09	irgsp1_rep	exon	22771150	22771561	.	+	.	Parent=Os09t0570400-02
Chr09	irgsp1_rep	mRNA	22774959	22777585	.	+	.	ID=Os09t0570500-01;Name=Os09t0570500-01;Locus_id=Os09g0570500;Oryzabase Gene Symbol Synonym(s)=OsRFPHC-16;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPHC-16%2C RING-HC protein 16;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=AK069259 (DDBJ%2C Best hit);ORF_evidence=B9G575 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J023011H14;Oryzabase=11799;Expression=AK069259;TENOR=Os09t0570500-01;KEGG=Os09t0570500-01
Chr09	irgsp1_rep	five_prime_UTR	22774959	22774959	.	+	.	Parent=Os09t0570500-01
Chr09	irgsp1_rep	CDS	22774960	22775621	.	+	0	Parent=Os09t0570500-01
Chr09	irgsp1_rep	CDS	22775709	22776015	.	+	1	Parent=Os09t0570500-01
Chr09	irgsp1_rep	CDS	22776257	22776422	.	+	0	Parent=Os09t0570500-01
Chr09	irgsp1_rep	CDS	22776886	22776988	.	+	2	Parent=Os09t0570500-01
Chr09	irgsp1_rep	CDS	22777126	22777243	.	+	1	Parent=Os09t0570500-01
Chr09	irgsp1_rep	three_prime_UTR	22777244	22777585	.	+	.	Parent=Os09t0570500-01
Chr09	irgsp1_rep	mRNA	22778763	22783735	.	+	.	ID=Os09t0570600-01;Name=Os09t0570600-01;Locus_id=Os09g0570600;Note=PAP/25A core domain containing protein.;Transcript_evidence=AK103632 (DDBJ%2C Best hit);ORF_evidence=B9G576 (UniProt);NIAS_FLcDNA=J033133P15;Expression=AK103632;TENOR=Os09t0570600-01;KEGG=Os09t0570600-01 (EC:2.7.7.52)
Chr09	irgsp1_rep	five_prime_UTR	22778763	22779079	.	+	.	Parent=Os09t0570600-01
Chr09	irgsp1_rep	CDS	22779080	22779165	.	+	0	Parent=Os09t0570600-01
Chr09	irgsp1_rep	CDS	22779295	22779332	.	+	1	Parent=Os09t0570600-01
Chr09	irgsp1_rep	CDS	22779427	22779615	.	+	2	Parent=Os09t0570600-01
Chr09	irgsp1_rep	CDS	22780706	22780890	.	+	2	Parent=Os09t0570600-01
Chr09	irgsp1_rep	CDS	22780978	22781073	.	+	0	Parent=Os09t0570600-01
Chr09	irgsp1_rep	CDS	22781453	22781498	.	+	0	Parent=Os09t0570600-01
Chr09	irgsp1_rep	CDS	22781586	22781692	.	+	2	Parent=Os09t0570600-01
Chr09	irgsp1_rep	CDS	22782158	22782259	.	+	0	Parent=Os09t0570600-01
Chr09	irgsp1_rep	CDS	22782365	22782448	.	+	0	Parent=Os09t0570600-01
Chr09	irgsp1_rep	three_prime_UTR	22782449	22783735	.	+	.	Parent=Os09t0570600-01
Chr09	irgsp1_rep	mRNA	22782971	22783371	.	+	.	ID=Os09t0570600-02;Name=Os09t0570600-02;Locus_id=Os09g0570600;Note=Non-protein coding transcript.;Transcript_evidence=AK105456 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-125-E01;TENOR=Os09t0570600-02
Chr09	irgsp1_rep	exon	22782971	22783371	.	+	.	Parent=Os09t0570600-02
Chr09	irgsp1_rep	mRNA	22790611	22792001	.	+	.	ID=Os09t0570800-01;Name=Os09t0570800-01;Locus_id=Os09g0570800;RAP-DB Gene Symbol Synonym(s)=SLC2;RAP-DB Gene Name Synonym(s)=slender and crinkly leaf 2;CGSNL Gene Symbol=SLC2;CGSNL Gene Name=SLENDER AND CRINKLY LEAF 2;Oryzabase Gene Symbol Synonym(s)=OsSLC2;Note=Dioxygenase%2C Shoot development%2C Salicylic acid (SA) production%2C Phytohormone homeostasis;Transcript_evidence=AK064211 (truncated),Inferred from literature;ORF_evidence=Q651B6;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Isopenicillin N synthase-like (IPR027443),Non-haem dioxygenase N-terminal domain (IPR026992),Oxoglutarate/iron-dependent dioxygenase (IPR005123);NIAS_FLcDNA=002-104-E12 (truncated);Manual Curation=November 12%2C 2019;Literature_PMID=31701152;Oryzabase=23309;Expression=AK064211;TENOR=Os09t0570800-01;KEGG=Os09t0570800-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=cytoplasm (GO:0005737), nucleus (GO:0005634)
Chr09	irgsp1_rep	five_prime_UTR	22790611	22790659	.	+	.	Parent=Os09t0570800-01
Chr09	irgsp1_rep	CDS	22790660	22791796	.	+	0	Parent=Os09t0570800-01
Chr09	irgsp1_rep	three_prime_UTR	22791797	22792001	.	+	.	Parent=Os09t0570800-01
Chr09	irgsp1_rep	mRNA	22792228	22792931	.	-	.	ID=Os09t0570850-00;Name=Os09t0570850-00;Locus_id=Os09g0570850;Note=Similar to Histone H2B.;Transcript_evidence=ab initio prediction;ORF_evidence=B6SGC3 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H2B (IPR000558),Histone core (IPR007125),Histone-fold (IPR009072);TENOR=Os09t0570850-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	22792917	22792931	.	-	0	Parent=Os09t0570850-00
Chr09	irgsp1_rep	CDS	22792228	22792671	.	-	0	Parent=Os09t0570850-00
Chr09	irgsp1_rep	mRNA	22793266	22797763	.	-	.	ID=Os09t0570900-01;Name=Os09t0570900-01;Locus_id=Os09g0570900;Note=Amino acid-binding ACT domain containing protein.;Transcript_evidence=AK071292 (DDBJ%2C Best hit);ORF_evidence=B6TMA2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: amino acid binding (GO:0016597);InterPro=Amino acid-binding ACT (IPR002912);NIAS_FLcDNA=J023088I05;Expression=AK071292;TENOR=Os09t0570900-01;KEGG=Os09t0570900-01
Chr09	irgsp1_rep	five_prime_UTR	22797503	22797763	.	-	.	Parent=Os09t0570900-01
Chr09	irgsp1_rep	CDS	22797343	22797502	.	-	0	Parent=Os09t0570900-01
Chr09	irgsp1_rep	CDS	22797000	22797254	.	-	2	Parent=Os09t0570900-01
Chr09	irgsp1_rep	CDS	22796551	22796656	.	-	2	Parent=Os09t0570900-01
Chr09	irgsp1_rep	CDS	22794193	22794520	.	-	1	Parent=Os09t0570900-01
Chr09	irgsp1_rep	CDS	22793809	22794093	.	-	0	Parent=Os09t0570900-01
Chr09	irgsp1_rep	CDS	22793557	22793706	.	-	0	Parent=Os09t0570900-01
Chr09	irgsp1_rep	three_prime_UTR	22793266	22793556	.	-	.	Parent=Os09t0570900-01
Chr09	irgsp1_rep	mRNA	22793297	22796145	.	-	.	ID=Os09t0570900-02;Name=Os09t0570900-02;Locus_id=Os09g0570900;Note=Similar to amino acid binding protein.;Transcript_evidence=AK068397 (DDBJ%2C Best hit);ORF_evidence=B6TMA2 (UniProt);NIAS_FLcDNA=J013151F12;Expression=AK068397;TENOR=Os09t0570900-02;KEGG=Os09t0570900-02
Chr09	irgsp1_rep	five_prime_UTR	22794574	22796145	.	-	.	Parent=Os09t0570900-02
Chr09	irgsp1_rep	CDS	22794193	22794573	.	-	0	Parent=Os09t0570900-02
Chr09	irgsp1_rep	CDS	22793809	22794093	.	-	0	Parent=Os09t0570900-02
Chr09	irgsp1_rep	CDS	22793557	22793706	.	-	0	Parent=Os09t0570900-02
Chr09	irgsp1_rep	three_prime_UTR	22793297	22793556	.	-	.	Parent=Os09t0570900-02
Chr09	irgsp1_rep	mRNA	22794326	22797492	.	+	.	ID=Os09t0570951-00;Name=Os09t0570951-00;Locus_id=Os09g0570951;Note=Hypothetical gene.;Transcript_evidence=tplb0017n19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0570951-00
Chr09	irgsp1_rep	five_prime_UTR	22794326	22794525	.	+	.	Parent=Os09t0570951-00
Chr09	irgsp1_rep	five_prime_UTR	22796555	22796647	.	+	.	Parent=Os09t0570951-00
Chr09	irgsp1_rep	five_prime_UTR	22796992	22797000	.	+	.	Parent=Os09t0570951-00
Chr09	irgsp1_rep	CDS	22797001	22797254	.	+	0	Parent=Os09t0570951-00
Chr09	irgsp1_rep	CDS	22797343	22797492	.	+	1	Parent=Os09t0570951-00
Chr09	irgsp1_rep	mRNA	22800622	22802181	.	-	.	ID=Os09t0571000-00;Name=Os09t0571000-00;Locus_id=Os09g0571000;Oryzabase Gene Symbol Synonym(s)=OsDSR7;Oryzabase Gene Name Synonym(s)=DUF966-stress repressive gene 7;Note=Protein of unknown function DUF966 family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q651B3 (UniProt);InterPro=Protein of unknown function DUF966 (IPR010369),Uncharacterised conserved protein UCP031043 (IPR021182);Oryzabase=15444;TENOR=Os09t0571000-00;KEGG=Os09t0571000-00
Chr09	irgsp1_rep	CDS	22800938	22802181	.	-	0	Parent=Os09t0571000-00
Chr09	irgsp1_rep	CDS	22800622	22800820	.	-	1	Parent=Os09t0571000-00
Chr09	irgsp1_rep	mRNA	22803050	22803971	.	-	.	ID=Os09t0571033-01;Name=Os09t0571033-01;Locus_id=Os09g0571033;Note=Conserved hypothetical protein.;Transcript_evidence=AK241104 (DDBJ%2C Best hit);ORF_evidence=NP_001175997.1 (RefSeq);NIAS_FLcDNA=J065079G08;TENOR=Os09t0571033-01;KEGG=Os09t0571033-01
Chr09	irgsp1_rep	five_prime_UTR	22803727	22803971	.	-	.	Parent=Os09t0571033-01
Chr09	irgsp1_rep	CDS	22803295	22803726	.	-	0	Parent=Os09t0571033-01
Chr09	irgsp1_rep	three_prime_UTR	22803050	22803294	.	-	.	Parent=Os09t0571033-01
Chr09	irgsp1_rep	mRNA	22804668	22806066	.	+	.	ID=Os09t0571100-01;Name=Os09t0571100-01;Locus_id=Os09g0571100;CGSNL Gene Symbol=PME28;CGSNL Gene Name=PECTIN METHYLESTERASE 28;Oryzabase Gene Symbol Synonym(s)=OsPME28;Oryzabase Gene Name Synonym(s)=pectin methylesterase 28;Note=Pectin lyase fold/virulence factor domain containing protein.;Transcript_evidence=AK106869 (DDBJ%2C Best hit);ORF_evidence=C5X6M1 (UniProt);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),Pectinesterase%2C active site (IPR018040);NIAS_FLcDNA=002-118-D06;Oryzabase=13192;Expression=AK106869;TENOR=Os09t0571100-01;KEGG=Os09t0571100-01
Chr09	irgsp1_rep	five_prime_UTR	22804668	22804745	.	+	.	Parent=Os09t0571100-01
Chr09	irgsp1_rep	CDS	22804746	22805972	.	+	0	Parent=Os09t0571100-01
Chr09	irgsp1_rep	three_prime_UTR	22805973	22806066	.	+	.	Parent=Os09t0571100-01
Chr09	irgsp1_rep	mRNA	22806006	22806996	.	-	.	ID=Os09t0571200-01;Name=Os09t0571200-01;Locus_id=Os09g0571200;RAP-DB Gene Symbol Synonym(s)=OsC2DP;RAP-DB Gene Name Synonym(s)=C2 domain-containing protein;CGSNL Gene Symbol=C2DP;CGSNL Gene Name=C2 DOMAIN-CONTAINING PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsC2DP;Oryzabase Gene Name Synonym(s)=C2 domain-containing protein;Note=C2 domain-containing protein%2C Salt tolerance;Transcript_evidence=AK062604;ORF_evidence=Q651B1;InterPro=C2 domain superfamily (IPR035892),C2 domain (IPR000008);NIAS_FLcDNA=001-105-A01;Manual Curation=June 17%2C 2019;Literature_PMID=31198970;Oryzabase=23129;Expression=AK062604;TENOR=Os09t0571200-01;KEGG=Os09t0571200-01;Subcellular location=cytosol (GO:0005829), plasma membrane (GO:0005886) [salt stress]
Chr09	irgsp1_rep	five_prime_UTR	22806984	22806996	.	-	.	Parent=Os09t0571200-01
Chr09	irgsp1_rep	CDS	22806111	22806983	.	-	0	Parent=Os09t0571200-01
Chr09	irgsp1_rep	three_prime_UTR	22806006	22806110	.	-	.	Parent=Os09t0571200-01
Chr09	irgsp1_rep	mRNA	22809907	22810986	.	+	.	ID=Os09t0571400-01;Name=Os09t0571400-01;Locus_id=Os09g0571400;CGSNL Gene Symbol=CYP19-3;CGSNL Gene Name=CYCLOPHILIN 19-3;Oryzabase Gene Symbol Synonym(s)=OsCYP19-3%2C Cyp1%2C OsCYP-25%2C OsCYP19-2a%2C OsCYP19-2b;Oryzabase Gene Name Synonym(s)=cyclophilin 19-3%2C cyclophilin 1%2C cyclophilin 25;Note=Cyclophilin 1.;Transcript_evidence=AK103109 (DDBJ%2C Best hit);ORF_evidence=Q40672 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);InterPro=Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type (IPR002130),Cyclophilin-like (IPR015891),Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type%2C conserved site (IPR020892);NIAS_FLcDNA=J033119A20;Oryzabase=10058;Expression=AK103109;TENOR=Os09t0571400-01;KEGG=Os09t0571400-01 (EC:5.2.1.8)
Chr09	irgsp1_rep	five_prime_UTR	22809907	22809962	.	+	.	Parent=Os09t0571400-01
Chr09	irgsp1_rep	five_prime_UTR	22810287	22810294	.	+	.	Parent=Os09t0571400-01
Chr09	irgsp1_rep	CDS	22810295	22810834	.	+	0	Parent=Os09t0571400-01
Chr09	irgsp1_rep	three_prime_UTR	22810835	22810986	.	+	.	Parent=Os09t0571400-01
Chr09	irgsp1_rep	mRNA	22811278	22814067	.	-	.	ID=Os09t0571500-01;Name=Os09t0571500-01;Locus_id=Os09g0571500;Note=Lipase%2C class 3 family protein.;Transcript_evidence=AK071951 (DDBJ%2C Best hit);ORF_evidence=NP_181773.2 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921);NIAS_FLcDNA=J013085F24;Expression=AK071951;TENOR=Os09t0571500-01;KEGG=Os09t0571500-01
Chr09	irgsp1_rep	five_prime_UTR	22814016	22814067	.	-	.	Parent=Os09t0571500-01
Chr09	irgsp1_rep	CDS	22813709	22814015	.	-	0	Parent=Os09t0571500-01
Chr09	irgsp1_rep	CDS	22813419	22813604	.	-	2	Parent=Os09t0571500-01
Chr09	irgsp1_rep	CDS	22812831	22813180	.	-	2	Parent=Os09t0571500-01
Chr09	irgsp1_rep	CDS	22812547	22812747	.	-	0	Parent=Os09t0571500-01
Chr09	irgsp1_rep	CDS	22812374	22812444	.	-	0	Parent=Os09t0571500-01
Chr09	irgsp1_rep	CDS	22811972	22812111	.	-	1	Parent=Os09t0571500-01
Chr09	irgsp1_rep	CDS	22811527	22811828	.	-	2	Parent=Os09t0571500-01
Chr09	irgsp1_rep	three_prime_UTR	22811278	22811526	.	-	.	Parent=Os09t0571500-01
Chr09	irgsp1_rep	mRNA	22811278	22813495	.	-	.	ID=Os09t0571500-02;Name=Os09t0571500-02;Locus_id=Os09g0571500;Note=Similar to lipase class 3 family protein.;Transcript_evidence=AK106610 (DDBJ%2C Best hit);ORF_evidence=NP_181773.2 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921);NIAS_FLcDNA=002-112-F07;TENOR=Os09t0571500-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	five_prime_UTR	22813495	22813495	.	-	.	Parent=Os09t0571500-02
Chr09	irgsp1_rep	CDS	22813419	22813494	.	-	0	Parent=Os09t0571500-02
Chr09	irgsp1_rep	CDS	22812831	22813180	.	-	2	Parent=Os09t0571500-02
Chr09	irgsp1_rep	CDS	22812547	22812747	.	-	0	Parent=Os09t0571500-02
Chr09	irgsp1_rep	CDS	22812374	22812444	.	-	0	Parent=Os09t0571500-02
Chr09	irgsp1_rep	CDS	22811972	22812111	.	-	1	Parent=Os09t0571500-02
Chr09	irgsp1_rep	CDS	22811527	22811828	.	-	2	Parent=Os09t0571500-02
Chr09	irgsp1_rep	three_prime_UTR	22811278	22811526	.	-	.	Parent=Os09t0571500-02
Chr09	irgsp1_rep	mRNA	22821581	22821976	.	-	.	ID=Os09t0571700-00;Name=Os09t0571700-00;Locus_id=Os09g0571700;CGSNL Gene Symbol=ERF123;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 123;Oryzabase Gene Symbol Synonym(s)=OsERF#123%2C OsERF123%2C AP2/EREBP#066%2C AP2/EREBP66;Oryzabase Gene Name Synonym(s)=ethylene response factor 123%2C APETALA2/ethylene-responsive element binding protein 66;Note=Similar to Ethylene-responsive transcription factor ERF096.;Transcript_evidence=BT009060 (DDBJ);ORF_evidence=Q7XDZ2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);Oryzabase=10618;TENOR=Os09t0571700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr09	irgsp1_rep	CDS	22821581	22821976	.	-	0	Parent=Os09t0571700-00
Chr09	irgsp1_rep	mRNA	22847140	22847950	.	+	.	ID=Os09t0572000-01;Name=Os09t0572000-01;Locus_id=Os09g0572000;CGSNL Gene Symbol=ERF87;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 87;Oryzabase Gene Symbol Synonym(s)=OsERF#087%2C OsERF087%2C OsERF87%2C AP2/EREBP#067%2C AP2/EREBP67;Oryzabase Gene Name Synonym(s)=ethylene response factor 87%2C APETALA2/ethylene-responsive element binding protein 67;Note=Pathogenesis-related transcriptional factor and ERF domain containing protein.;Transcript_evidence=AK241281 (DDBJ%2C Best hit);ORF_evidence=XP_002306842.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J065136G16;Oryzabase=10592;TENOR=Os09t0572000-01;KEGG=Os09t0572000-01
Chr09	irgsp1_rep	five_prime_UTR	22847140	22847219	.	+	.	Parent=Os09t0572000-01
Chr09	irgsp1_rep	CDS	22847220	22847936	.	+	0	Parent=Os09t0572000-01
Chr09	irgsp1_rep	three_prime_UTR	22847937	22847950	.	+	.	Parent=Os09t0572000-01
Chr09	irgsp1_rep	mRNA	22853112	22854423	.	-	.	ID=Os09t0572100-01;Name=Os09t0572100-01;Locus_id=Os09g0572100;CGSNL Gene Symbol=RLCK283;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 283;Oryzabase Gene Symbol Synonym(s)=OsRLCK283;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 283;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK066582 (DDBJ%2C Best hit);ORF_evidence=NP_001147212.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J013071J07;Oryzabase=18966;Expression=AK066582;TENOR=Os09t0572100-01;KEGG=Os09t0572100-01
Chr09	irgsp1_rep	five_prime_UTR	22854311	22854423	.	-	.	Parent=Os09t0572100-01
Chr09	irgsp1_rep	CDS	22853243	22854310	.	-	0	Parent=Os09t0572100-01
Chr09	irgsp1_rep	three_prime_UTR	22853112	22853242	.	-	.	Parent=Os09t0572100-01
Chr09	irgsp1_rep	mRNA	22852331	22854317	.	-	.	ID=Os09t0572100-02;Name=Os09t0572100-02;Locus_id=Os09g0572100;CGSNL Gene Symbol=RLCK283;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 283;Oryzabase Gene Symbol Synonym(s)=OsRLCK283;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 283;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK106416 (DDBJ%2C Best hit);ORF_evidence=NP_001147212.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=002-103-A06;Oryzabase=18966;Expression=AK106416;TENOR=Os09t0572100-02;KEGG=Os09t0572100-02
Chr09	irgsp1_rep	five_prime_UTR	22854311	22854317	.	-	.	Parent=Os09t0572100-02
Chr09	irgsp1_rep	CDS	22853243	22854310	.	-	0	Parent=Os09t0572100-02
Chr09	irgsp1_rep	three_prime_UTR	22852331	22853242	.	-	.	Parent=Os09t0572100-02
Chr09	irgsp1_rep	mRNA	22853364	22854507	.	+	.	ID=Os09t0572150-01;Name=Os09t0572150-01;Locus_id=Os09g0572150;Note=Hypothetical gene.;Transcript_evidence=AK241871 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065217P08;TENOR=Os09t0572150-01;KEGG=Os09t0572150-01
Chr09	irgsp1_rep	five_prime_UTR	22853364	22853364	.	+	.	Parent=Os09t0572150-01
Chr09	irgsp1_rep	CDS	22853365	22853646	.	+	0	Parent=Os09t0572150-01
Chr09	irgsp1_rep	three_prime_UTR	22853647	22854507	.	+	.	Parent=Os09t0572150-01
Chr09	irgsp1_rep	mRNA	22855317	22859057	.	+	.	ID=Os09t0572200-01;Name=Os09t0572200-01;Locus_id=Os09g0572200;RAP-DB Gene Symbol Synonym(s)=OsLpa1-P;RAP-DB Gene Name Synonym(s)=low phytic acid 1-paralog%2C OsLpa1 paralog;CGSNL Gene Symbol=LPA1-P;CGSNL Gene Name=LOW PHYTIC ACID 1-PARALOG;Oryzabase Gene Symbol Synonym(s)=OsLpa1-P%2C Lpa1-P;Oryzabase Gene Name Synonym(s)=low phytic acid 1-paralog%2C OsLpa1 paralog;Note=OsLpa1 (low phytic acid 1) paralog%2C Phytic acid biosynthesis;Transcript_evidence=AK072621;ORF_evidence=Q651A1;InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417);NIAS_FLcDNA=J023130B22;Manual Curation=August 8%2C 2019;Literature_PMID=30870429;Oryzabase=22977;Expression=AK072621;TENOR=Os09t0572200-01;KEGG=Os09t0572200-01
Chr09	irgsp1_rep	five_prime_UTR	22855317	22855476	.	+	.	Parent=Os09t0572200-01
Chr09	irgsp1_rep	CDS	22855477	22855620	.	+	0	Parent=Os09t0572200-01
Chr09	irgsp1_rep	CDS	22855701	22855960	.	+	0	Parent=Os09t0572200-01
Chr09	irgsp1_rep	CDS	22856066	22856147	.	+	1	Parent=Os09t0572200-01
Chr09	irgsp1_rep	CDS	22856371	22856766	.	+	0	Parent=Os09t0572200-01
Chr09	irgsp1_rep	CDS	22856948	22857688	.	+	0	Parent=Os09t0572200-01
Chr09	irgsp1_rep	CDS	22857815	22857946	.	+	0	Parent=Os09t0572200-01
Chr09	irgsp1_rep	CDS	22858376	22858762	.	+	0	Parent=Os09t0572200-01
Chr09	irgsp1_rep	three_prime_UTR	22858763	22859057	.	+	.	Parent=Os09t0572200-01
Chr09	irgsp1_rep	mRNA	22855457	22857854	.	+	.	ID=Os09t0572200-02;Name=Os09t0572200-02;Locus_id=Os09g0572200;CGSNL Gene Symbol=LPA1-P;CGSNL Gene Name=LOW PHYTIC ACID 1-PARALOG;Oryzabase Gene Symbol Synonym(s)=OsLpa1-P%2C Lpa1-P;Oryzabase Gene Name Synonym(s)=low phytic acid 1-paralog%2C OsLpa1 paralog;Note=Similar to predicted protein.;Transcript_evidence=AK109639 (DDBJ%2C Best hit);ORF_evidence=NP_200884.2 (RefSeq);NIAS_FLcDNA=002-138-E07;Oryzabase=22977;TENOR=Os09t0572200-02
Chr09	irgsp1_rep	five_prime_UTR	22855457	22855476	.	+	.	Parent=Os09t0572200-02
Chr09	irgsp1_rep	CDS	22855477	22855620	.	+	0	Parent=Os09t0572200-02
Chr09	irgsp1_rep	CDS	22855701	22855960	.	+	0	Parent=Os09t0572200-02
Chr09	irgsp1_rep	CDS	22856066	22856147	.	+	1	Parent=Os09t0572200-02
Chr09	irgsp1_rep	CDS	22856371	22856766	.	+	0	Parent=Os09t0572200-02
Chr09	irgsp1_rep	CDS	22856948	22857688	.	+	0	Parent=Os09t0572200-02
Chr09	irgsp1_rep	CDS	22857815	22857854	.	+	0	Parent=Os09t0572200-02
Chr09	irgsp1_rep	mRNA	22855483	22858473	.	-	.	ID=Os09t0572250-00;Name=Os09t0572250-00;Locus_id=Os09g0572250;Note=Hypothetical protein.;Transcript_evidence=tplb0048i15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0572250-00
Chr09	irgsp1_rep	five_prime_UTR	22858307	22858473	.	-	.	Parent=Os09t0572250-00
Chr09	irgsp1_rep	five_prime_UTR	22856947	22857721	.	-	.	Parent=Os09t0572250-00
Chr09	irgsp1_rep	five_prime_UTR	22856369	22856765	.	-	.	Parent=Os09t0572250-00
Chr09	irgsp1_rep	five_prime_UTR	22856096	22856144	.	-	.	Parent=Os09t0572250-00
Chr09	irgsp1_rep	CDS	22856040	22856095	.	-	0	Parent=Os09t0572250-00
Chr09	irgsp1_rep	CDS	22855722	22855938	.	-	1	Parent=Os09t0572250-00
Chr09	irgsp1_rep	CDS	22855653	22855670	.	-	0	Parent=Os09t0572250-00
Chr09	irgsp1_rep	three_prime_UTR	22855483	22855652	.	-	.	Parent=Os09t0572250-00
Chr09	irgsp1_rep	mRNA	22859472	22861571	.	-	.	ID=Os09t0572301-00;Name=Os09t0572301-00;Locus_id=Os09g0572301;Note=Hypothetical conserved gene.;Transcript_evidence=CU405617 (DDBJ%2C Best hit);ORF_evidence=B8ATT0 (UniProt);TENOR=Os09t0572301-00;KEGG=Os09t0572301-00
Chr09	irgsp1_rep	five_prime_UTR	22861372	22861571	.	-	.	Parent=Os09t0572301-00
Chr09	irgsp1_rep	five_prime_UTR	22859668	22859697	.	-	.	Parent=Os09t0572301-00
Chr09	irgsp1_rep	CDS	22859554	22859667	.	-	0	Parent=Os09t0572301-00
Chr09	irgsp1_rep	three_prime_UTR	22859472	22859553	.	-	.	Parent=Os09t0572301-00
Chr09	irgsp1_rep	mRNA	22883138	22887559	.	-	.	ID=Os09t0572400-01;Name=Os09t0572400-01;Locus_id=Os09g0572400;CGSNL Gene Symbol=ABCF5;CGSNL Gene Name=ABC TRANSPORTER F FAMILY MEMBER 5;Oryzabase Gene Symbol Synonym(s)=OsABCF5%2C OsABCF5_1%2C OsABCF5_2%2C OsABCF5_3;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCF subgroup member 5;Note=Similar to Abcf2-prov protein.;Transcript_evidence=AK069041 (DDBJ%2C Best hit);ORF_evidence=XP_002331473.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=J023004J15;Oryzabase=11979;Expression=AK069041;TENOR=Os09t0572400-01;KEGG=Os09t0572400-01
Chr09	irgsp1_rep	five_prime_UTR	22887488	22887559	.	-	.	Parent=Os09t0572400-01
Chr09	irgsp1_rep	CDS	22887338	22887487	.	-	0	Parent=Os09t0572400-01
Chr09	irgsp1_rep	CDS	22887170	22887243	.	-	0	Parent=Os09t0572400-01
Chr09	irgsp1_rep	CDS	22886869	22887079	.	-	1	Parent=Os09t0572400-01
Chr09	irgsp1_rep	CDS	22885802	22886036	.	-	0	Parent=Os09t0572400-01
Chr09	irgsp1_rep	CDS	22883862	22884919	.	-	2	Parent=Os09t0572400-01
Chr09	irgsp1_rep	three_prime_UTR	22883630	22883861	.	-	.	Parent=Os09t0572400-01
Chr09	irgsp1_rep	three_prime_UTR	22883138	22883532	.	-	.	Parent=Os09t0572400-01
Chr09	irgsp1_rep	mRNA	22883828	22887491	.	+	.	ID=Os09t0572450-00;Name=Os09t0572450-00;Locus_id=Os09g0572450;Note=Hypothetical protein.;Transcript_evidence=tplb0030n11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os09t0572450-00
Chr09	irgsp1_rep	five_prime_UTR	22883828	22883907	.	+	.	Parent=Os09t0572450-00
Chr09	irgsp1_rep	CDS	22883908	22884465	.	+	0	Parent=Os09t0572450-00
Chr09	irgsp1_rep	three_prime_UTR	22884466	22884928	.	+	.	Parent=Os09t0572450-00
Chr09	irgsp1_rep	three_prime_UTR	22885806	22886040	.	+	.	Parent=Os09t0572450-00
Chr09	irgsp1_rep	three_prime_UTR	22886874	22887078	.	+	.	Parent=Os09t0572450-00
Chr09	irgsp1_rep	three_prime_UTR	22887169	22887491	.	+	.	Parent=Os09t0572450-00
Chr09	irgsp1_rep	mRNA	22897189	22902631	.	+	.	ID=Os09t0572500-01;Name=Os09t0572500-01;Locus_id=Os09g0572500;Oryzabase Gene Symbol Synonym(s)=OsEnS-131;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 131;Note=Similar to Beta-1%2C4-mannan synthase.;Transcript_evidence=AK107635 (DDBJ%2C Best hit);ORF_evidence=A3QT94 (UniProt);InterPro=Glycosyl transferase%2C family 2 (IPR001173);NIAS_FLcDNA=002-131-E08;Oryzabase=18422;Expression=AK107635;TENOR=Os09t0572500-01;KEGG=Os09t0572500-01
Chr09	irgsp1_rep	five_prime_UTR	22897189	22897493	.	+	.	Parent=Os09t0572500-01
Chr09	irgsp1_rep	CDS	22897494	22897787	.	+	0	Parent=Os09t0572500-01
Chr09	irgsp1_rep	CDS	22901172	22901270	.	+	0	Parent=Os09t0572500-01
Chr09	irgsp1_rep	CDS	22901357	22902589	.	+	0	Parent=Os09t0572500-01
Chr09	irgsp1_rep	three_prime_UTR	22902590	22902631	.	+	.	Parent=Os09t0572500-01
Chr09	irgsp1_rep	mRNA	22897479	22897792	.	-	.	ID=Os09t0572525-00;Name=Os09t0572525-00;Locus_id=Os09g0572525;Note=Hypothetical gene.;Transcript_evidence=EU949074 (DDBJ);ORF_evidence=longestORF;TENOR=Os09t0572525-00;KEGG=Os09t0572525-00
Chr09	irgsp1_rep	five_prime_UTR	22897791	22897792	.	-	.	Parent=Os09t0572525-00
Chr09	irgsp1_rep	CDS	22897479	22897790	.	-	0	Parent=Os09t0572525-00
Chr09	irgsp1_rep	mRNA	22903012	22904654	.	-	.	ID=Os09t0572550-01;Name=Os09t0572550-01;Locus_id=Os09g0572550;Note=Hypothetical gene.;Transcript_evidence=AK243102 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100024P20;TENOR=Os09t0572550-01;KEGG=Os09t0572550-01
Chr09	irgsp1_rep	five_prime_UTR	22904097	22904654	.	-	.	Parent=Os09t0572550-01
Chr09	irgsp1_rep	CDS	22903615	22904096	.	-	0	Parent=Os09t0572550-01
Chr09	irgsp1_rep	CDS	22903209	22903464	.	-	1	Parent=Os09t0572550-01
Chr09	irgsp1_rep	three_prime_UTR	22903012	22903208	.	-	.	Parent=Os09t0572550-01
Chr09	irgsp1_rep	mRNA	22903020	22904830	.	+	.	ID=Os09t0572600-01;Name=Os09t0572600-01;Locus_id=Os09g0572600;CGSNL Gene Symbol=RLCK284;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 284;Oryzabase Gene Symbol Synonym(s)=OsRLCK284%2C YK12%2C PTK16%2C OsPTK16;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 284%2C Protein Tyrosine Kinase 16;Note=Similar to Receptor protein kinase-like protein.;Transcript_evidence=AK070226 (DDBJ%2C Best hit);ORF_evidence=NP_188689.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023042D11;Oryzabase=18667;Expression=AK070226;TENOR=Os09t0572600-01;KEGG=Os09t0572600-01
Chr09	irgsp1_rep	five_prime_UTR	22903020	22903275	.	+	.	Parent=Os09t0572600-01
Chr09	irgsp1_rep	CDS	22903276	22903492	.	+	0	Parent=Os09t0572600-01
Chr09	irgsp1_rep	CDS	22903607	22904649	.	+	2	Parent=Os09t0572600-01
Chr09	irgsp1_rep	three_prime_UTR	22904650	22904830	.	+	.	Parent=Os09t0572600-01
Chr09	irgsp1_rep	mRNA	22905476	22908160	.	+	.	ID=Os09t0572700-01;Name=Os09t0572700-01;Locus_id=Os09g0572700;CGSNL Gene Symbol=UCL33;CGSNL Gene Name=UCLACYANIN-LIKE PROTEIN 33;Oryzabase Gene Symbol Synonym(s)=OsUCL33;Oryzabase Gene Name Synonym(s)=uclacyanin-like protein 33;Note=Similar to Blue copper-binding protein.;Transcript_evidence=AK243096 (DDBJ%2C Best hit);ORF_evidence=Q56UT7 (UniProt);InterPro=Cupredoxin (IPR008972);NIAS_FLcDNA=J100024A13;Oryzabase=9782;TENOR=Os09t0572700-01
Chr09	irgsp1_rep	five_prime_UTR	22905476	22907958	.	+	.	Parent=Os09t0572700-01
Chr09	irgsp1_rep	CDS	22907959	22908160	.	+	0	Parent=Os09t0572700-01
Chr09	irgsp1_rep	mRNA	22907857	22908793	.	+	.	ID=Os09t0572700-02;Name=Os09t0572700-02;Locus_id=Os09g0572700;CGSNL Gene Symbol=UCL33;CGSNL Gene Name=UCLACYANIN-LIKE PROTEIN 33;Oryzabase Gene Symbol Synonym(s)=OsUCL33;Oryzabase Gene Name Synonym(s)=uclacyanin-like protein 33;Note=Cupredoxin domain containing protein.;Transcript_evidence=AK063784 (DDBJ%2C Best hit);ORF_evidence=Q56UT7 (UniProt);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);NIAS_FLcDNA=001-121-D10;Oryzabase=9782;Expression=AK063784;TENOR=Os09t0572700-02;KEGG=Os09t0572700-02
Chr09	irgsp1_rep	five_prime_UTR	22907857	22907958	.	+	.	Parent=Os09t0572700-02
Chr09	irgsp1_rep	CDS	22907959	22908130	.	+	0	Parent=Os09t0572700-02
Chr09	irgsp1_rep	CDS	22908218	22908564	.	+	2	Parent=Os09t0572700-02
Chr09	irgsp1_rep	three_prime_UTR	22908565	22908793	.	+	.	Parent=Os09t0572700-02
Chr09	irgsp1_rep	mRNA	22909001	22909683	.	+	.	ID=Os09t0572800-01;Name=Os09t0572800-01;Locus_id=Os09g0572800;Note=Ole e 1 allergen family protein.;Transcript_evidence=AK120781 (DDBJ%2C Best hit);ORF_evidence=Q01L34 (UniProt);GO=Cellular Component: extracellular space (GO:0005615);InterPro=Allergen Ole e 1%2C conserved site (IPR006040),Pollen Ole e 1 allergen/extensin (IPR006041);NIAS_FLcDNA=J023010B15;Expression=AK120781;TENOR=Os09t0572800-01;KEGG=Os09t0572800-01
Chr09	irgsp1_rep	five_prime_UTR	22909001	22909022	.	+	.	Parent=Os09t0572800-01
Chr09	irgsp1_rep	CDS	22909023	22909526	.	+	0	Parent=Os09t0572800-01
Chr09	irgsp1_rep	three_prime_UTR	22909527	22909683	.	+	.	Parent=Os09t0572800-01
Chr09	irgsp1_rep	mRNA	22911567	22916732	.	-	.	ID=Os09t0572900-01;Name=Os09t0572900-01;Locus_id=Os09g0572900;RAP-DB Gene Symbol Synonym(s)=DJLM%2C OsDRP1E;RAP-DB Gene Name Synonym(s)=DONGJIN-LESION MIMIC%2C dynamin-related protein 1E;CGSNL Gene Symbol=DJLM;CGSNL Gene Name=DONGJIN-LESION MIMIC;Oryzabase Gene Symbol Synonym(s)=DJ-LM%2C OsDRP1E%2C DRP1E;Oryzabase Gene Name Synonym(s)=dongjin-lesion mimic%2C dynamin-related protein 1E;Note=Dynamin-related protein 1E%2C Negative regulation of programmed cell death%2C Control of cytoChrome c release;Transcript_evidence=AK069270;ORF_evidence=Q650Z3;GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Dynamin superfamily (IPR022812),Dynamin%2C GTPase domain (IPR001401),P-loop containing nucleoside triphosphate hydrolase (IPR027417),Dynamin-type guanine nucleotide-binding (G) domain (IPR030381),Dynamin central domain (IPR000375),GTPase effector domain (IPR020850),Dynamin GTPase effector (IPR003130),Dynamin%2C GTPase region%2C conserved site (IPR019762);NIAS_FLcDNA=J023013P18;Manual Curation=June 6%2C 2017;Literature_PMID=28081268;Oryzabase=21594;Expression=AK069270;TENOR=Os09t0572900-01;KEGG=Os09t0572900-01;Subcellular location=mitochondrion (GO:0005739)
Chr09	irgsp1_rep	five_prime_UTR	22916643	22916732	.	-	.	Parent=Os09t0572900-01
Chr09	irgsp1_rep	CDS	22916499	22916642	.	-	0	Parent=Os09t0572900-01
Chr09	irgsp1_rep	CDS	22916271	22916334	.	-	0	Parent=Os09t0572900-01
Chr09	irgsp1_rep	CDS	22916086	22916193	.	-	2	Parent=Os09t0572900-01
Chr09	irgsp1_rep	CDS	22915721	22915822	.	-	2	Parent=Os09t0572900-01
Chr09	irgsp1_rep	CDS	22915191	22915241	.	-	2	Parent=Os09t0572900-01
Chr09	irgsp1_rep	CDS	22915006	22915067	.	-	2	Parent=Os09t0572900-01
Chr09	irgsp1_rep	CDS	22914701	22914791	.	-	0	Parent=Os09t0572900-01
Chr09	irgsp1_rep	CDS	22914390	22914454	.	-	2	Parent=Os09t0572900-01
Chr09	irgsp1_rep	CDS	22914013	22914207	.	-	0	Parent=Os09t0572900-01
Chr09	irgsp1_rep	CDS	22913806	22913925	.	-	0	Parent=Os09t0572900-01
Chr09	irgsp1_rep	CDS	22913614	22913684	.	-	0	Parent=Os09t0572900-01
Chr09	irgsp1_rep	CDS	22912870	22913095	.	-	1	Parent=Os09t0572900-01
Chr09	irgsp1_rep	CDS	22912536	22912586	.	-	0	Parent=Os09t0572900-01
Chr09	irgsp1_rep	CDS	22912054	22912455	.	-	0	Parent=Os09t0572900-01
Chr09	irgsp1_rep	CDS	22911836	22911964	.	-	0	Parent=Os09t0572900-01
Chr09	irgsp1_rep	three_prime_UTR	22911567	22911835	.	-	.	Parent=Os09t0572900-01
Chr09	irgsp1_rep	mRNA	22911845	22916645	.	+	.	ID=Os09t0572950-00;Name=Os09t0572950-00;Locus_id=Os09g0572950;Note=Non-protein coding transcript.;Transcript_evidence=tplb0034e16 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os09t0572950-00
Chr09	irgsp1_rep	exon	22911845	22911942	.	+	.	Parent=Os09t0572950-00
Chr09	irgsp1_rep	exon	22912025	22912464	.	+	.	Parent=Os09t0572950-00
Chr09	irgsp1_rep	exon	22912841	22913103	.	+	.	Parent=Os09t0572950-00
Chr09	irgsp1_rep	exon	22913625	22913706	.	+	.	Parent=Os09t0572950-00
Chr09	irgsp1_rep	exon	22913820	22913933	.	+	.	Parent=Os09t0572950-00
Chr09	irgsp1_rep	exon	22914025	22914204	.	+	.	Parent=Os09t0572950-00
Chr09	irgsp1_rep	exon	22914387	22914457	.	+	.	Parent=Os09t0572950-00
Chr09	irgsp1_rep	exon	22914698	22914832	.	+	.	Parent=Os09t0572950-00
Chr09	irgsp1_rep	exon	22915174	22915233	.	+	.	Parent=Os09t0572950-00
Chr09	irgsp1_rep	exon	22915716	22915854	.	+	.	Parent=Os09t0572950-00
Chr09	irgsp1_rep	exon	22916115	22916181	.	+	.	Parent=Os09t0572950-00
Chr09	irgsp1_rep	exon	22916257	22916334	.	+	.	Parent=Os09t0572950-00
Chr09	irgsp1_rep	exon	22916499	22916645	.	+	.	Parent=Os09t0572950-00
Chr09	irgsp1_rep	mRNA	22917111	22919021	.	+	.	ID=Os09t0573000-01;Name=Os09t0573000-01;Locus_id=Os09g0573000;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK073399 (DDBJ%2C Best hit);ORF_evidence=B9G584 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033044O15;Expression=AK073399;TENOR=Os09t0573000-01;KEGG=Os09t0573000-01
Chr09	irgsp1_rep	five_prime_UTR	22917111	22917203	.	+	.	Parent=Os09t0573000-01
Chr09	irgsp1_rep	CDS	22917204	22917691	.	+	0	Parent=Os09t0573000-01
Chr09	irgsp1_rep	CDS	22917746	22918925	.	+	1	Parent=Os09t0573000-01
Chr09	irgsp1_rep	three_prime_UTR	22918926	22919021	.	+	.	Parent=Os09t0573000-01
Chr09	irgsp1_rep	mRNA	22925577	22928730	.	-	.	ID=Os09t0573100-01;Name=Os09t0573100-01;Locus_id=Os09g0573100;Note=Ubiquitin domain containing protein.;Transcript_evidence=AK121232 (DDBJ%2C Best hit);ORF_evidence=XP_002881393.1 (RefSeq);InterPro=Uncharacterised domain SAYSvFN (IPR019387),Ubiquitin supergroup (IPR019955);NIAS_FLcDNA=J023093B21;Expression=AK121232;TENOR=Os09t0573100-01;KEGG=Os09t0573100-01
Chr09	irgsp1_rep	five_prime_UTR	22928685	22928730	.	-	.	Parent=Os09t0573100-01
Chr09	irgsp1_rep	CDS	22928580	22928684	.	-	0	Parent=Os09t0573100-01
Chr09	irgsp1_rep	CDS	22928380	22928503	.	-	0	Parent=Os09t0573100-01
Chr09	irgsp1_rep	CDS	22928104	22928195	.	-	2	Parent=Os09t0573100-01
Chr09	irgsp1_rep	CDS	22927936	22928014	.	-	0	Parent=Os09t0573100-01
Chr09	irgsp1_rep	CDS	22927743	22927852	.	-	2	Parent=Os09t0573100-01
Chr09	irgsp1_rep	CDS	22926630	22926694	.	-	0	Parent=Os09t0573100-01
Chr09	irgsp1_rep	CDS	22925951	22926044	.	-	1	Parent=Os09t0573100-01
Chr09	irgsp1_rep	three_prime_UTR	22925577	22925950	.	-	.	Parent=Os09t0573100-01
Chr09	irgsp1_rep	mRNA	22929694	22930149	.	+	.	ID=Os09t0573150-00;Name=Os09t0573150-00;Locus_id=Os09g0573150;Note=AIG2-like domain containing protein.;Transcript_evidence=tplb0010b04 (Wheat FLcDNA);ORF_evidence=Q5Z481 (UniProt);InterPro=AIG2-like (IPR009288),Butirosin biosynthesis%2C BtrG-like (IPR013024);TENOR=Os09t0573150-00
Chr09	irgsp1_rep	CDS	22929694	22929945	.	+	0	Parent=Os09t0573150-00
Chr09	irgsp1_rep	CDS	22930022	22930144	.	+	0	Parent=Os09t0573150-00
Chr09	irgsp1_rep	three_prime_UTR	22930145	22930149	.	+	.	Parent=Os09t0573150-00
Chr09	irgsp1_rep	mRNA	22934014	22939008	.	+	.	ID=Os09t0573200-01;Name=Os09t0573200-01;Locus_id=Os09g0573200;Note=Hypothetical conserved gene.;Transcript_evidence=AK101256 (DDBJ%2C Best hit);ORF_evidence=Q5Z480 (UniProt);InterPro=Uncharacterised conserved protein UCP013022 (IPR016607),Protein of unknown function DUF3550/UPF0682 (IPR022709);NIAS_FLcDNA=J033032G15;Expression=AK101256;TENOR=Os09t0573200-01;KEGG=Os09t0573200-01
Chr09	irgsp1_rep	five_prime_UTR	22934014	22934032	.	+	.	Parent=Os09t0573200-01
Chr09	irgsp1_rep	CDS	22934033	22934590	.	+	0	Parent=Os09t0573200-01
Chr09	irgsp1_rep	CDS	22934674	22934880	.	+	0	Parent=Os09t0573200-01
Chr09	irgsp1_rep	CDS	22934978	22935193	.	+	0	Parent=Os09t0573200-01
Chr09	irgsp1_rep	CDS	22936770	22936836	.	+	0	Parent=Os09t0573200-01
Chr09	irgsp1_rep	CDS	22936926	22937072	.	+	2	Parent=Os09t0573200-01
Chr09	irgsp1_rep	CDS	22937206	22937295	.	+	2	Parent=Os09t0573200-01
Chr09	irgsp1_rep	CDS	22937850	22938037	.	+	2	Parent=Os09t0573200-01
Chr09	irgsp1_rep	CDS	22938127	22938263	.	+	0	Parent=Os09t0573200-01
Chr09	irgsp1_rep	CDS	22938491	22938731	.	+	1	Parent=Os09t0573200-01
Chr09	irgsp1_rep	three_prime_UTR	22938732	22939008	.	+	.	Parent=Os09t0573200-01
Chr09	irgsp1_rep	mRNA	22934057	22936352	.	+	.	ID=Os09t0573200-02;Name=Os09t0573200-02;Locus_id=Os09g0573200;Note=Protein of unknown function DUF3550/UPF0682 domain containing protein.;Transcript_evidence=AK072865 (DDBJ%2C Best hit);ORF_evidence=Q5Z480 (UniProt);InterPro=Protein of unknown function DUF3550/UPF0682 (IPR022709);NIAS_FLcDNA=J023142I04;Expression=AK072865;TENOR=Os09t0573200-02;KEGG=Os09t0573200-02
Chr09	irgsp1_rep	CDS	22934057	22934590	.	+	0	Parent=Os09t0573200-02
Chr09	irgsp1_rep	CDS	22934674	22934889	.	+	0	Parent=Os09t0573200-02
Chr09	irgsp1_rep	three_prime_UTR	22934890	22936352	.	+	.	Parent=Os09t0573200-02
Chr09	irgsp1_rep	mRNA	22937234	22938862	.	+	.	ID=Os09t0573200-03;Name=Os09t0573200-03;Locus_id=Os09g0573200;Note=Similar to predicted protein.;Transcript_evidence=AK062145 (DDBJ%2C Best hit);ORF_evidence=Q5Z480 (UniProt);InterPro=Protein of unknown function DUF3550/UPF0682 (IPR022709);NIAS_FLcDNA=001-045-G09;Expression=AK062145;TENOR=Os09t0573200-03;KEGG=Os09t0573200-03
Chr09	irgsp1_rep	five_prime_UTR	22937234	22937842	.	+	.	Parent=Os09t0573200-03
Chr09	irgsp1_rep	CDS	22937843	22938037	.	+	0	Parent=Os09t0573200-03
Chr09	irgsp1_rep	CDS	22938127	22938263	.	+	0	Parent=Os09t0573200-03
Chr09	irgsp1_rep	CDS	22938491	22938731	.	+	1	Parent=Os09t0573200-03
Chr09	irgsp1_rep	three_prime_UTR	22938732	22938862	.	+	.	Parent=Os09t0573200-03
Chr10	irgsp1_rep	mRNA	44902	45692	.	+	.	ID=Os10t0100200-01;Name=Os10t0100200-01;Locus_id=Os10g0100200;Note=Hypothetical protein.;Transcript_evidence=AK107108 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-123-A01;TENOR=Os10t0100200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	44902	44902	.	+	.	Parent=Os10t0100200-01
Chr10	irgsp1_rep	CDS	44903	45178	.	+	0	Parent=Os10t0100200-01
Chr10	irgsp1_rep	three_prime_UTR	45179	45692	.	+	.	Parent=Os10t0100200-01
Chr10	irgsp1_rep	mRNA	46031	58278	.	-	.	ID=Os10t0100300-01;Name=Os10t0100300-01;Locus_id=Os10g0100300;Oryzabase Gene Symbol Synonym(s)=TIC62%2C Os-TIC26%2C OsTIC26;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK065110 (DDBJ%2C Best hit),AK104934 (DDBJ%2C Best hit);ORF_evidence=NP_001147690.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NmrA-like (IPR008030),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013001O01,001-047-D05;Oryzabase=21047;TENOR=Os10t0100300-01
Chr10	irgsp1_rep	five_prime_UTR	58259	58278	.	-	.	Parent=Os10t0100300-01
Chr10	irgsp1_rep	CDS	57990	58258	.	-	0	Parent=Os10t0100300-01
Chr10	irgsp1_rep	CDS	57782	57854	.	-	1	Parent=Os10t0100300-01
Chr10	irgsp1_rep	CDS	57631	57670	.	-	0	Parent=Os10t0100300-01
Chr10	irgsp1_rep	CDS	57366	57548	.	-	2	Parent=Os10t0100300-01
Chr10	irgsp1_rep	CDS	57152	57233	.	-	2	Parent=Os10t0100300-01
Chr10	irgsp1_rep	CDS	56899	56971	.	-	1	Parent=Os10t0100300-01
Chr10	irgsp1_rep	CDS	55774	56016	.	-	0	Parent=Os10t0100300-01
Chr10	irgsp1_rep	CDS	55111	55202	.	-	0	Parent=Os10t0100300-01
Chr10	irgsp1_rep	CDS	46681	46866	.	-	1	Parent=Os10t0100300-01
Chr10	irgsp1_rep	CDS	46356	46553	.	-	1	Parent=Os10t0100300-01
Chr10	irgsp1_rep	CDS	46217	46271	.	-	1	Parent=Os10t0100300-01
Chr10	irgsp1_rep	three_prime_UTR	46031	46216	.	-	.	Parent=Os10t0100300-01
Chr10	irgsp1_rep	mRNA	67119	72969	.	+	.	ID=Os10t0100500-01;Name=Os10t0100500-01;Locus_id=Os10g0100500;CGSNL Gene Symbol=RLCK285;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 285;Oryzabase Gene Symbol Synonym(s)=OsPUB61%2C OsRLCK285;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 61%2C U-box protein 61%2C Receptor-like Cytoplasmic Kinase 285;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK102556 (DDBJ%2C Best hit);ORF_evidence=B9G587 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: response to stress (GO:0006950),Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),U box domain (IPR003613),UspA (IPR006016),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033097G03;Oryzabase=17852;Expression=AK102556;TENOR=Os10t0100500-01;KEGG=Os10t0100500-01
Chr10	irgsp1_rep	five_prime_UTR	67119	67125	.	+	.	Parent=Os10t0100500-01
Chr10	irgsp1_rep	CDS	67126	67396	.	+	0	Parent=Os10t0100500-01
Chr10	irgsp1_rep	CDS	67556	67674	.	+	2	Parent=Os10t0100500-01
Chr10	irgsp1_rep	CDS	67787	67896	.	+	0	Parent=Os10t0100500-01
Chr10	irgsp1_rep	CDS	69945	70383	.	+	1	Parent=Os10t0100500-01
Chr10	irgsp1_rep	CDS	70479	70601	.	+	0	Parent=Os10t0100500-01
Chr10	irgsp1_rep	CDS	70773	71318	.	+	0	Parent=Os10t0100500-01
Chr10	irgsp1_rep	CDS	71697	72366	.	+	0	Parent=Os10t0100500-01
Chr10	irgsp1_rep	CDS	72480	72637	.	+	2	Parent=Os10t0100500-01
Chr10	irgsp1_rep	three_prime_UTR	72638	72969	.	+	.	Parent=Os10t0100500-01
Chr10	irgsp1_rep	mRNA	71174	72765	.	+	.	ID=Os10t0100500-02;Name=Os10t0100500-02;Locus_id=Os10g0100500;CGSNL Gene Symbol=RLCK285;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 285;Oryzabase Gene Symbol Synonym(s)=OsPUB61%2C OsRLCK285;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 61%2C U-box protein 61%2C Receptor-like Cytoplasmic Kinase 285;Note=Similar to predicted protein.;Transcript_evidence=AK061113 (DDBJ%2C Best hit);ORF_evidence=B9G587 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),U box domain (IPR003613),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=006-207-D08;Oryzabase=17852;Expression=AK061113;TENOR=Os10t0100500-02;KEGG=Os10t0100500-02
Chr10	irgsp1_rep	five_prime_UTR	71174	71174	.	+	.	Parent=Os10t0100500-02
Chr10	irgsp1_rep	CDS	71175	71318	.	+	0	Parent=Os10t0100500-02
Chr10	irgsp1_rep	CDS	71697	72366	.	+	0	Parent=Os10t0100500-02
Chr10	irgsp1_rep	CDS	72480	72637	.	+	2	Parent=Os10t0100500-02
Chr10	irgsp1_rep	three_prime_UTR	72638	72765	.	+	.	Parent=Os10t0100500-02
Chr10	irgsp1_rep	mRNA	81102	82243	.	-	.	ID=Os10t0100700-01;Name=Os10t0100700-01;Locus_id=Os10g0100700;CGSNL Gene Symbol=PDX1.3B;CGSNL Gene Name=PYRIDOXINE BIOSYNTHESIS PROTEIN 1.3B;Oryzabase Gene Symbol Synonym(s)=OsPDX1.3b%2C OsPDX1.2%2C PDX1.2;Oryzabase Gene Name Synonym(s)=SOR/SNZ protein%2C pyridoxine synthase%2C PYRIDOXINE BIOSYNTHESIS PROTEIN1.3b%2C Pyridoxal phosphate synthase protein 1.2;Note=Vitamin B6 biosynthesis protein family protein.;Transcript_evidence=AK060323 (DDBJ%2C Best hit);ORF_evidence=B7E5L2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: pyridoxal phosphate biosynthetic process (GO:0042823),Molecular Function: catalytic activity (GO:0003824);InterPro=Vitamin B6 biosynthesis protein (IPR001852),Ribulose-phosphate binding barrel (IPR011060),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=001-007-G11;Oryzabase=18252;Expression=AK060323;TENOR=Os10t0100700-01;KEGG=Os10t0100700-01 (EC:4.-.-.-)
Chr10	irgsp1_rep	five_prime_UTR	82174	82243	.	-	.	Parent=Os10t0100700-01
Chr10	irgsp1_rep	CDS	81232	82173	.	-	0	Parent=Os10t0100700-01
Chr10	irgsp1_rep	three_prime_UTR	81102	81231	.	-	.	Parent=Os10t0100700-01
Chr10	irgsp1_rep	mRNA	94800	97438	.	-	.	ID=Os10t0100900-01;Name=Os10t0100900-01;Locus_id=Os10g0100900;Note=Hypothetical protein.;Transcript_evidence=AK068970 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023001K01;Expression=AK068970;TENOR=Os10t0100900-01;KEGG=Os10t0100900-01
Chr10	irgsp1_rep	five_prime_UTR	95489	97438	.	-	.	Parent=Os10t0100900-01
Chr10	irgsp1_rep	CDS	94844	95488	.	-	0	Parent=Os10t0100900-01
Chr10	irgsp1_rep	three_prime_UTR	94800	94843	.	-	.	Parent=Os10t0100900-01
Chr10	irgsp1_rep	mRNA	94937	97746	.	+	.	ID=Os10t0101000-01;Name=Os10t0101000-01;Locus_id=Os10g0101000;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK121858 (DDBJ%2C Best hit);ORF_evidence=NP_001147593.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),EGF-like region%2C conserved site (IPR013032),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033102I19;Expression=AK121858;TENOR=Os10t0101000-01;KEGG=Os10t0101000-01
Chr10	irgsp1_rep	five_prime_UTR	94937	94967	.	+	.	Parent=Os10t0101000-01
Chr10	irgsp1_rep	CDS	94968	97409	.	+	0	Parent=Os10t0101000-01
Chr10	irgsp1_rep	three_prime_UTR	97410	97746	.	+	.	Parent=Os10t0101000-01
Chr10	irgsp1_rep	mRNA	100437	103373	.	-	.	ID=Os10t0101100-01;Name=Os10t0101100-01;Locus_id=Os10g0101100;CGSNL Gene Symbol=SCP44;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 44;Oryzabase Gene Symbol Synonym(s)=OsSCP44;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 44;Note=Peptidase S10%2C serine carboxypeptidase family protein.;Transcript_evidence=AK106667 (DDBJ%2C Best hit);ORF_evidence=Q2R0J2 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=002-113-H08;Oryzabase=19223;Expression=AK106667;TENOR=Os10t0101100-01;KEGG=Os10t0101100-01 (EC:3.4.16.5)
Chr10	irgsp1_rep	five_prime_UTR	103318	103373	.	-	.	Parent=Os10t0101100-01
Chr10	irgsp1_rep	CDS	102652	103317	.	-	0	Parent=Os10t0101100-01
Chr10	irgsp1_rep	CDS	102474	102575	.	-	0	Parent=Os10t0101100-01
Chr10	irgsp1_rep	CDS	102298	102381	.	-	0	Parent=Os10t0101100-01
Chr10	irgsp1_rep	CDS	102103	102198	.	-	0	Parent=Os10t0101100-01
Chr10	irgsp1_rep	CDS	101733	101804	.	-	0	Parent=Os10t0101100-01
Chr10	irgsp1_rep	CDS	101377	101609	.	-	0	Parent=Os10t0101100-01
Chr10	irgsp1_rep	CDS	101226	101271	.	-	1	Parent=Os10t0101100-01
Chr10	irgsp1_rep	CDS	100835	100918	.	-	0	Parent=Os10t0101100-01
Chr10	irgsp1_rep	three_prime_UTR	100437	100834	.	-	.	Parent=Os10t0101100-01
Chr10	irgsp1_rep	mRNA	100797	103204	.	+	.	ID=Os10t0101125-00;Name=Os10t0101125-00;Locus_id=Os10g0101125;Note=Hypothetical protein.;Transcript_evidence=tplb0037b22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0101125-00
Chr10	irgsp1_rep	five_prime_UTR	100797	100908	.	+	.	Parent=Os10t0101125-00
Chr10	irgsp1_rep	five_prime_UTR	101320	101604	.	+	.	Parent=Os10t0101125-00
Chr10	irgsp1_rep	five_prime_UTR	102162	102425	.	+	.	Parent=Os10t0101125-00
Chr10	irgsp1_rep	CDS	102426	102616	.	+	0	Parent=Os10t0101125-00
Chr10	irgsp1_rep	CDS	102684	102747	.	+	1	Parent=Os10t0101125-00
Chr10	irgsp1_rep	three_prime_UTR	102748	103204	.	+	.	Parent=Os10t0101125-00
Chr10	irgsp1_rep	mRNA	105334	110561	.	+	.	ID=Os10t0101150-01;Name=Os10t0101150-01;Locus_id=Os10g0101150;Note=Hypothetical gene.;Transcript_evidence=AK288692 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090060K04;TENOR=Os10t0101150-01;KEGG=Os10t0101150-01
Chr10	irgsp1_rep	five_prime_UTR	105334	105336	.	+	.	Parent=Os10t0101150-01
Chr10	irgsp1_rep	CDS	105337	105612	.	+	0	Parent=Os10t0101150-01
Chr10	irgsp1_rep	three_prime_UTR	105613	110561	.	+	.	Parent=Os10t0101150-01
Chr10	irgsp1_rep	mRNA	110138	116452	.	-	.	ID=Os10t0101200-01;Name=Os10t0101200-01;Locus_id=Os10g0101200;RAP-DB Gene Symbol Synonym(s)=SCP45%2C OsSCP45%2C OsSCP46%2C SCP46;RAP-DB Gene Name Synonym(s)=SERINE CARBOXYPEPTIDASE 45%2C Serine carboxypeptidase 45%2C Serine carboxypeptidase 46;CGSNL Gene Symbol=SCP45;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 45;Oryzabase Gene Symbol Synonym(s)=OsSCP45%2C OsSCP46%2C SCP46;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 45%2C Serine carboxypeptidase 46;Note=Serine carboxypeptidase%2C Regulation of grain filling and seed germination;Transcript_evidence=AK072954,AK104807;ORF_evidence=Q10A76;GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Alpha/Beta hydrolase fold (IPR029058),Serine carboxypeptidases%2C histidine active site (IPR033124);NIAS_FLcDNA=J023149K09, 001-040-E08;Manual Curation=October 26%2C 2016;Literature_PMID=27448032;Oryzabase=19224;Expression=AK072954;TENOR=Os10t0101200-01;KEGG=Os10t0101200-01
Chr10	irgsp1_rep	five_prime_UTR	116446	116452	.	-	.	Parent=Os10t0101200-01
Chr10	irgsp1_rep	CDS	116112	116445	.	-	0	Parent=Os10t0101200-01
Chr10	irgsp1_rep	CDS	111464	111540	.	-	2	Parent=Os10t0101200-01
Chr10	irgsp1_rep	CDS	110365	111372	.	-	0	Parent=Os10t0101200-01
Chr10	irgsp1_rep	three_prime_UTR	110138	110364	.	-	.	Parent=Os10t0101200-01
Chr10	irgsp1_rep	mRNA	160975	161860	.	-	.	ID=Os10t0101900-01;Name=Os10t0101900-01;Locus_id=Os10g0101900;Note=Non-protein coding transcript.;Transcript_evidence=AK064524 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-111-G07;TENOR=Os10t0101900-01
Chr10	irgsp1_rep	exon	160975	161860	.	-	.	Parent=Os10t0101900-01
Chr10	irgsp1_rep	mRNA	175582	181102	.	+	.	ID=Os10t0102200-00;Name=Os10t0102200-00;Locus_id=Os10g0102200;Note=Similar to cDNA%2C clone: J100054L12%2C full insert sequence.;Transcript_evidence=ab initio prediction;ORF_evidence=B7FA83 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);TENOR=Os10t0102200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	175582	175641	.	+	0	Parent=Os10t0102200-00
Chr10	irgsp1_rep	CDS	175741	175815	.	+	0	Parent=Os10t0102200-00
Chr10	irgsp1_rep	CDS	176039	176539	.	+	0	Parent=Os10t0102200-00
Chr10	irgsp1_rep	CDS	176841	177182	.	+	0	Parent=Os10t0102200-00
Chr10	irgsp1_rep	CDS	181085	181102	.	+	0	Parent=Os10t0102200-00
Chr10	irgsp1_rep	mRNA	186845	188331	.	-	.	ID=Os10t0102400-01;Name=Os10t0102400-01;Locus_id=Os10g0102400;Note=Similar to CF9.;Transcript_evidence=AK066584 (DDBJ%2C Best hit);ORF_evidence=B6UEQ9 (UniProt);NIAS_FLcDNA=J013074P05;Expression=AK066584;TENOR=Os10t0102400-01;KEGG=Os10t0102400-01
Chr10	irgsp1_rep	five_prime_UTR	188330	188331	.	-	.	Parent=Os10t0102400-01
Chr10	irgsp1_rep	CDS	187385	188329	.	-	0	Parent=Os10t0102400-01
Chr10	irgsp1_rep	three_prime_UTR	186845	187384	.	-	.	Parent=Os10t0102400-01
Chr10	irgsp1_rep	mRNA	227823	234634	.	+	.	ID=Os10t0102900-00;Name=Os10t0102900-00;Locus_id=Os10g0102900;Note=Similar to OSIGBa0140C02.4 protein.;Transcript_evidence=AK288010 (DDBJ%2C Secondary hit);ORF_evidence=Q01N12 (UniProt);InterPro=Protein of unknown function DUF2045 (IPR019141);TENOR=Os10t0102900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	227823	227882	.	+	.	Parent=Os10t0102900-00
Chr10	irgsp1_rep	CDS	227883	228001	.	+	0	Parent=Os10t0102900-00
Chr10	irgsp1_rep	CDS	228717	228912	.	+	1	Parent=Os10t0102900-00
Chr10	irgsp1_rep	CDS	228997	229071	.	+	0	Parent=Os10t0102900-00
Chr10	irgsp1_rep	CDS	229501	229607	.	+	0	Parent=Os10t0102900-00
Chr10	irgsp1_rep	CDS	230161	230218	.	+	1	Parent=Os10t0102900-00
Chr10	irgsp1_rep	CDS	231151	231210	.	+	0	Parent=Os10t0102900-00
Chr10	irgsp1_rep	CDS	231288	231362	.	+	0	Parent=Os10t0102900-00
Chr10	irgsp1_rep	CDS	231472	231609	.	+	0	Parent=Os10t0102900-00
Chr10	irgsp1_rep	CDS	232734	232788	.	+	0	Parent=Os10t0102900-00
Chr10	irgsp1_rep	CDS	233102	233224	.	+	2	Parent=Os10t0102900-00
Chr10	irgsp1_rep	CDS	233613	233824	.	+	2	Parent=Os10t0102900-00
Chr10	irgsp1_rep	CDS	234295	234318	.	+	0	Parent=Os10t0102900-00
Chr10	irgsp1_rep	three_prime_UTR	234319	234634	.	+	.	Parent=Os10t0102900-00
Chr10	irgsp1_rep	mRNA	241302	242237	.	-	.	ID=Os10t0103140-00;Name=Os10t0103140-00;Locus_id=Os10g0103140;CGSNL Gene Symbol=WAK93;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 93;Oryzabase Gene Symbol Synonym(s)=OsWAK93%2C OsRLCK286%2C RLCK286;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 286;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=DQ013358 (DDBJ);ORF_evidence=Q7XGR2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=8013;TENOR=Os10t0103140-00
Chr10	irgsp1_rep	five_prime_UTR	242132	242237	.	-	.	Parent=Os10t0103140-00
Chr10	irgsp1_rep	CDS	241307	242131	.	-	0	Parent=Os10t0103140-00
Chr10	irgsp1_rep	three_prime_UTR	241302	241306	.	-	.	Parent=Os10t0103140-00
Chr10	irgsp1_rep	mRNA	241314	251323	.	+	.	ID=Os10t0103380-00;Name=Os10t0103380-00;Locus_id=Os10g0103380;Note=Hypothetical protein.;Transcript_evidence=tplb0044f04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0103380-00
Chr10	irgsp1_rep	five_prime_UTR	241314	242151	.	+	.	Parent=Os10t0103380-00
Chr10	irgsp1_rep	five_prime_UTR	249572	249872	.	+	.	Parent=Os10t0103380-00
Chr10	irgsp1_rep	five_prime_UTR	250523	250529	.	+	.	Parent=Os10t0103380-00
Chr10	irgsp1_rep	CDS	250530	250955	.	+	0	Parent=Os10t0103380-00
Chr10	irgsp1_rep	three_prime_UTR	250956	251323	.	+	.	Parent=Os10t0103380-00
Chr10	irgsp1_rep	mRNA	263292	271996	.	-	.	ID=Os10t0103500-00;Name=Os10t0103500-00;Locus_id=Os10g0103500;Note=Hypothetical conserved gene.;Transcript_evidence=AK288597 (DDBJ%2C Secondary hit);ORF_evidence=B9G2S3 (UniProt);TENOR=Os10t0103500-00;KEGG=Os10t0103500-00
Chr10	irgsp1_rep	five_prime_UTR	271283	271996	.	-	.	Parent=Os10t0103500-00
Chr10	irgsp1_rep	five_prime_UTR	269601	271272	.	-	.	Parent=Os10t0103500-00
Chr10	irgsp1_rep	five_prime_UTR	264699	265933	.	-	.	Parent=Os10t0103500-00
Chr10	irgsp1_rep	CDS	263973	264698	.	-	0	Parent=Os10t0103500-00
Chr10	irgsp1_rep	three_prime_UTR	263292	263972	.	-	.	Parent=Os10t0103500-00
Chr10	irgsp1_rep	mRNA	257773	260018	.	+	.	ID=Os10t0103622-00;Name=Os10t0103622-00;Locus_id=Os10g0103622;Note=Similar to Tasselseed2-like short-chain dehydrogenase/reductase (Fragment).;Transcript_evidence=L20621 (DDBJ);ORF_evidence=Q2EFF9 (UniProt);TENOR=Os10t0103622-00;KEGG=Os10t0103622-00
Chr10	irgsp1_rep	five_prime_UTR	257773	258070	.	+	.	Parent=Os10t0103622-00
Chr10	irgsp1_rep	five_prime_UTR	258511	258696	.	+	.	Parent=Os10t0103622-00
Chr10	irgsp1_rep	CDS	258697	258741	.	+	0	Parent=Os10t0103622-00
Chr10	irgsp1_rep	CDS	259782	259973	.	+	0	Parent=Os10t0103622-00
Chr10	irgsp1_rep	three_prime_UTR	259974	260018	.	+	.	Parent=Os10t0103622-00
Chr10	irgsp1_rep	mRNA	284721	286949	.	-	.	ID=Os10t0103700-01;Name=Os10t0103700-01;Locus_id=Os10g0103700;CGSNL Gene Symbol=HOX15;CGSNL Gene Name=HOMEOBOX GENE 15;Oryzabase Gene Symbol Synonym(s)=Oshox15%2C OsHox15;Oryzabase Gene Name Synonym(s)=rice homeobox gene 15%2C Homeobox-leucine zipper protein HOX15%2C Homeodomain transcription factor HOX15%2C HD-ZIP protein HOX15;Note=Similar to Homeobox-leucine zipper protein HOX15.;Transcript_evidence=AK099568 (DDBJ%2C Best hit);ORF_evidence=Q7G737 (UniProt);NIAS_FLcDNA=J013034N05;Oryzabase=8451;Expression=AK099568;TENOR=Os10t0103700-01;KEGG=Os10t0103700-01
Chr10	irgsp1_rep	five_prime_UTR	286807	286949	.	-	.	Parent=Os10t0103700-01
Chr10	irgsp1_rep	CDS	286565	286806	.	-	0	Parent=Os10t0103700-01
Chr10	irgsp1_rep	CDS	285268	285283	.	-	1	Parent=Os10t0103700-01
Chr10	irgsp1_rep	three_prime_UTR	284721	285267	.	-	.	Parent=Os10t0103700-01
Chr10	irgsp1_rep	mRNA	284721	286945	.	-	.	ID=Os10t0103700-02;Name=Os10t0103700-02;Locus_id=Os10g0103700;CGSNL Gene Symbol=HOX15;CGSNL Gene Name=HOMEOBOX GENE 15;Oryzabase Gene Symbol Synonym(s)=Oshox15%2C OsHox15;Oryzabase Gene Name Synonym(s)=rice homeobox gene 15%2C Homeobox-leucine zipper protein HOX15%2C Homeodomain transcription factor HOX15%2C HD-ZIP protein HOX15;Note=Similar to Homeobox-leucine zipper protein HOX15.;Transcript_evidence=AK066743 (DDBJ%2C Best hit);ORF_evidence=Q7G737 (UniProt);NIAS_FLcDNA=J013083J07;Oryzabase=8451;Expression=AK066743;TENOR=Os10t0103700-02;KEGG=Os10t0103700-02
Chr10	irgsp1_rep	five_prime_UTR	286807	286945	.	-	.	Parent=Os10t0103700-02
Chr10	irgsp1_rep	CDS	286765	286806	.	-	0	Parent=Os10t0103700-02
Chr10	irgsp1_rep	CDS	285272	285379	.	-	0	Parent=Os10t0103700-02
Chr10	irgsp1_rep	three_prime_UTR	284721	285271	.	-	.	Parent=Os10t0103700-02
Chr10	irgsp1_rep	mRNA	284706	285771	.	-	.	ID=Os10t0103700-03;Name=Os10t0103700-03;Locus_id=Os10g0103700;CGSNL Gene Symbol=HOX15;CGSNL Gene Name=HOMEOBOX GENE 15;Oryzabase Gene Symbol Synonym(s)=Oshox15%2C OsHox15;Oryzabase Gene Name Synonym(s)=rice homeobox gene 15%2C Homeobox-leucine zipper protein HOX15%2C Homeodomain transcription factor HOX15%2C HD-ZIP protein HOX15;Note=Similar to HD-ZIP protein (Fragment).;Transcript_evidence=AK060176 (DDBJ%2C Best hit);ORF_evidence=Q7G737 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Leucine zipper%2C homeobox-associated (IPR003106);NIAS_FLcDNA=006-312-A02;Oryzabase=8451;Expression=AK060176;TENOR=Os10t0103700-03;KEGG=Os10t0103700-03
Chr10	irgsp1_rep	five_prime_UTR	285611	285771	.	-	.	Parent=Os10t0103700-03
Chr10	irgsp1_rep	CDS	285461	285610	.	-	0	Parent=Os10t0103700-03
Chr10	irgsp1_rep	CDS	285272	285346	.	-	0	Parent=Os10t0103700-03
Chr10	irgsp1_rep	three_prime_UTR	284706	285271	.	-	.	Parent=Os10t0103700-03
Chr10	irgsp1_rep	mRNA	301799	308024	.	-	.	ID=Os10t0103800-01;Name=Os10t0103800-01;Locus_id=Os10g0103800;CGSNL Gene Symbol=ITPK1;CGSNL Gene Name=INOSITOL 1%2C3%2C4-TRISPHOSPHATE 5/6-KINASE 1;Oryzabase Gene Symbol Synonym(s)=OsITPK1%2C OsITP5/6K-1%2C ITP5/6K-1%2C OsITL2;Oryzabase Gene Name Synonym(s)=inositol 1%2C 3%2C 4-trisphosphate 5/6-kinase 1;Note=Inositol 1%2C 3%2C 4-trisphosphate 56-kinase family protein.;Transcript_evidence=AK106544 (DDBJ%2C Best hit);ORF_evidence=B6TDJ5 (UniProt);GO=Biological Process: inositol trisphosphate metabolic process (GO:0032957),Cellular Component: intracellular (GO:0005622),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: ATP binding (GO:0005524),Molecular Function: inositol tetrakisphosphate 1-kinase activity (GO:0047325),Molecular Function: inositol-1%2C3%2C4-trisphosphate 6-kinase activity (GO:0052725),Molecular Function: inositol-1%2C3%2C4-trisphosphate 5-kinase activity (GO:0052726);InterPro=Inositol-tetrakisphosphate 1-kinase (IPR008656),Inositol-tetrakisphosphate 1-kinase%2C plant (IPR017427);NIAS_FLcDNA=002-108-F02;Oryzabase=11438;Expression=AK106544;TENOR=Os10t0103800-01;KEGG=Os10t0103800-01 (EC:2.7.1.134%2C EC:2.7.1.159)
Chr10	irgsp1_rep	five_prime_UTR	307771	308024	.	-	.	Parent=Os10t0103800-01
Chr10	irgsp1_rep	CDS	307568	307770	.	-	0	Parent=Os10t0103800-01
Chr10	irgsp1_rep	CDS	304969	305050	.	-	1	Parent=Os10t0103800-01
Chr10	irgsp1_rep	CDS	304740	304772	.	-	0	Parent=Os10t0103800-01
Chr10	irgsp1_rep	CDS	304516	304636	.	-	0	Parent=Os10t0103800-01
Chr10	irgsp1_rep	CDS	303972	304064	.	-	2	Parent=Os10t0103800-01
Chr10	irgsp1_rep	CDS	303654	303773	.	-	2	Parent=Os10t0103800-01
Chr10	irgsp1_rep	CDS	303376	303552	.	-	2	Parent=Os10t0103800-01
Chr10	irgsp1_rep	CDS	302884	302939	.	-	2	Parent=Os10t0103800-01
Chr10	irgsp1_rep	CDS	302726	302810	.	-	0	Parent=Os10t0103800-01
Chr10	irgsp1_rep	CDS	302098	302192	.	-	2	Parent=Os10t0103800-01
Chr10	irgsp1_rep	three_prime_UTR	301799	302097	.	-	.	Parent=Os10t0103800-01
Chr10	irgsp1_rep	mRNA	320212	324294	.	-	.	ID=Os10t0104000-01;Name=Os10t0104000-01;Locus_id=Os10g0104000;Note=Hypothetical conserved gene.;Transcript_evidence=AK288760 (DDBJ%2C Best hit);ORF_evidence=Q9AYJ1 (UniProt);NIAS_FLcDNA=J090067A18;TENOR=Os10t0104000-01;KEGG=Os10t0104000-01
Chr10	irgsp1_rep	five_prime_UTR	321416	324294	.	-	.	Parent=Os10t0104000-01
Chr10	irgsp1_rep	CDS	321215	321415	.	-	0	Parent=Os10t0104000-01
Chr10	irgsp1_rep	three_prime_UTR	320212	321214	.	-	.	Parent=Os10t0104000-01
Chr10	irgsp1_rep	mRNA	345785	347108	.	+	.	ID=Os10t0104300-00;Name=Os10t0104300-00;Locus_id=Os10g0104300;Oryzabase Gene Symbol Synonym(s)=OsbHLH023;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 023;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=EU955043 (DDBJ);ORF_evidence=Q9AYI8 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);Oryzabase=15314;TENOR=Os10t0104300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	345785	346252	.	+	0	Parent=Os10t0104300-00
Chr10	irgsp1_rep	CDS	346593	347108	.	+	0	Parent=Os10t0104300-00
Chr10	irgsp1_rep	mRNA	348798	357989	.	-	.	ID=Os10t0104500-01;Name=Os10t0104500-01;Locus_id=Os10g0104500;Oryzabase Gene Symbol Synonym(s)=OsWD40-175;Note=Similar to Notchless-related.;Transcript_evidence=AK122080 (DDBJ%2C Best hit);ORF_evidence=B6T999 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=G-protein%2C beta subunit (IPR001632),WD40 repeat (IPR001680),Quinonprotein alcohol dehydrogenase-like (IPR011047),NLE (IPR012972),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J033120J20;Oryzabase=10856;Expression=AK122080;TENOR=Os10t0104500-01;KEGG=Os10t0104500-01
Chr10	irgsp1_rep	five_prime_UTR	357879	357989	.	-	.	Parent=Os10t0104500-01
Chr10	irgsp1_rep	CDS	357714	357878	.	-	0	Parent=Os10t0104500-01
Chr10	irgsp1_rep	CDS	357003	357084	.	-	0	Parent=Os10t0104500-01
Chr10	irgsp1_rep	CDS	356796	356885	.	-	2	Parent=Os10t0104500-01
Chr10	irgsp1_rep	CDS	356436	356561	.	-	2	Parent=Os10t0104500-01
Chr10	irgsp1_rep	CDS	355646	355773	.	-	2	Parent=Os10t0104500-01
Chr10	irgsp1_rep	CDS	355147	355346	.	-	0	Parent=Os10t0104500-01
Chr10	irgsp1_rep	CDS	353589	353652	.	-	1	Parent=Os10t0104500-01
Chr10	irgsp1_rep	CDS	351978	352088	.	-	0	Parent=Os10t0104500-01
Chr10	irgsp1_rep	CDS	351740	351877	.	-	0	Parent=Os10t0104500-01
Chr10	irgsp1_rep	CDS	349777	349919	.	-	0	Parent=Os10t0104500-01
Chr10	irgsp1_rep	CDS	349648	349702	.	-	1	Parent=Os10t0104500-01
Chr10	irgsp1_rep	CDS	349249	349305	.	-	0	Parent=Os10t0104500-01
Chr10	irgsp1_rep	CDS	349073	349156	.	-	0	Parent=Os10t0104500-01
Chr10	irgsp1_rep	three_prime_UTR	348798	349072	.	-	.	Parent=Os10t0104500-01
Chr10	irgsp1_rep	mRNA	348893	355702	.	-	.	ID=Os10t0104500-02;Name=Os10t0104500-02;Locus_id=Os10g0104500;Oryzabase Gene Symbol Synonym(s)=OsWD40-175;Note=Hypothetical conserved gene.;Transcript_evidence=AK101265 (DDBJ%2C Best hit);ORF_evidence=Q9AYI7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=G-protein%2C beta subunit (IPR001632),WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J033032L03;Oryzabase=10856;Expression=AK101265;TENOR=Os10t0104500-02;KEGG=Os10t0104500-02
Chr10	irgsp1_rep	CDS	355646	355702	.	-	0	Parent=Os10t0104500-02
Chr10	irgsp1_rep	CDS	355147	355346	.	-	0	Parent=Os10t0104500-02
Chr10	irgsp1_rep	CDS	353589	353652	.	-	1	Parent=Os10t0104500-02
Chr10	irgsp1_rep	CDS	351978	352088	.	-	0	Parent=Os10t0104500-02
Chr10	irgsp1_rep	CDS	351740	351877	.	-	0	Parent=Os10t0104500-02
Chr10	irgsp1_rep	CDS	349777	349919	.	-	0	Parent=Os10t0104500-02
Chr10	irgsp1_rep	CDS	349648	349702	.	-	1	Parent=Os10t0104500-02
Chr10	irgsp1_rep	CDS	349249	349305	.	-	0	Parent=Os10t0104500-02
Chr10	irgsp1_rep	CDS	349073	349156	.	-	0	Parent=Os10t0104500-02
Chr10	irgsp1_rep	three_prime_UTR	348893	349072	.	-	.	Parent=Os10t0104500-02
Chr10	irgsp1_rep	mRNA	360638	366843	.	-	.	ID=Os10t0104700-01;Name=Os10t0104700-01;Locus_id=Os10g0104700;Note=Octicosapeptide/Phox/Bem1p domain containing protein.;Transcript_evidence=AK072615 (DDBJ%2C Best hit);ORF_evidence=Q9AYI6 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Phox/Bem1p (IPR000270),Zinc finger%2C CCHC-type (IPR001878),Transposase%2C MuDR%2C plant (IPR004332),Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);NIAS_FLcDNA=J023134C11;Expression=AK072615;TENOR=Os10t0104700-01;KEGG=Os10t0104700-01
Chr10	irgsp1_rep	five_prime_UTR	366585	366843	.	-	.	Parent=Os10t0104700-01
Chr10	irgsp1_rep	CDS	366583	366584	.	-	0	Parent=Os10t0104700-01
Chr10	irgsp1_rep	CDS	364455	364796	.	-	1	Parent=Os10t0104700-01
Chr10	irgsp1_rep	CDS	364106	364192	.	-	1	Parent=Os10t0104700-01
Chr10	irgsp1_rep	CDS	363907	364017	.	-	1	Parent=Os10t0104700-01
Chr10	irgsp1_rep	CDS	363657	363773	.	-	1	Parent=Os10t0104700-01
Chr10	irgsp1_rep	CDS	361748	363569	.	-	1	Parent=Os10t0104700-01
Chr10	irgsp1_rep	three_prime_UTR	361711	361747	.	-	.	Parent=Os10t0104700-01
Chr10	irgsp1_rep	three_prime_UTR	360638	360983	.	-	.	Parent=Os10t0104700-01
Chr10	irgsp1_rep	mRNA	361709	366794	.	+	.	ID=Os10t0104750-00;Name=Os10t0104750-00;Locus_id=Os10g0104750;Note=Hypothetical protein.;Transcript_evidence=tplb0046o14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0104750-00
Chr10	irgsp1_rep	five_prime_UTR	361709	362593	.	+	.	Parent=Os10t0104750-00
Chr10	irgsp1_rep	CDS	362594	363091	.	+	0	Parent=Os10t0104750-00
Chr10	irgsp1_rep	three_prime_UTR	363092	363571	.	+	.	Parent=Os10t0104750-00
Chr10	irgsp1_rep	three_prime_UTR	363658	363792	.	+	.	Parent=Os10t0104750-00
Chr10	irgsp1_rep	three_prime_UTR	363865	364004	.	+	.	Parent=Os10t0104750-00
Chr10	irgsp1_rep	three_prime_UTR	364096	364177	.	+	.	Parent=Os10t0104750-00
Chr10	irgsp1_rep	three_prime_UTR	364439	364791	.	+	.	Parent=Os10t0104750-00
Chr10	irgsp1_rep	three_prime_UTR	366674	366794	.	+	.	Parent=Os10t0104750-00
Chr10	irgsp1_rep	mRNA	372655	375691	.	-	.	ID=Os10t0104800-01;Name=Os10t0104800-01;Locus_id=Os10g0104800;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK071821 (DDBJ%2C Best hit),AK100339 (DDBJ%2C Best hit);ORF_evidence=NP_179437.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023114J15,J023081I19;Expression=AK071821;TENOR=Os10t0104800-01;KEGG=Os10t0104800-01
Chr10	irgsp1_rep	five_prime_UTR	375594	375691	.	-	.	Parent=Os10t0104800-01
Chr10	irgsp1_rep	five_prime_UTR	374412	374533	.	-	.	Parent=Os10t0104800-01
Chr10	irgsp1_rep	CDS	372705	374411	.	-	0	Parent=Os10t0104800-01
Chr10	irgsp1_rep	three_prime_UTR	372655	372704	.	-	.	Parent=Os10t0104800-01
Chr10	irgsp1_rep	mRNA	377147	385343	.	-	.	ID=Os10t0104900-01;Name=Os10t0104900-01;Locus_id=Os10g0104900;RAP-DB Gene Symbol Synonym(s)=CMT2%2C OsCMT3a%2C OsCMT2;RAP-DB Gene Name Synonym(s)=CHROMOMETHYLTRANSFERASE 2%2C Chromomethyltransferase 2%2C Chromomethylase 3a;CGSNL Gene Symbol=CMT2;CGSNL Gene Name=CHROMOMETHYLTRANSFERASE 2;Oryzabase Gene Symbol Synonym(s)=OsCMT2%2C OsCMT3a%2C CMT3a;Oryzabase Gene Name Synonym(s)=Chromomethyltransferase 2%2C Chromomethylase 3a;Note=Chromomethylase%2C Plant development%2C Silencing of transposable elements (TEs);Transcript_evidence=AB360583;ORF_evidence=C0SQ89;GO=Molecular Function: Chromatin binding (GO:0003682),Molecular Function: methyltransferase activity (GO:0008168);InterPro=C-5 cytosine methyltransferase (IPR001525),Bromo adjacent homology (BAH) domain (IPR001025),S-adenosyl-L-methionine-dependent methyltransferase (IPR029063),Chromo domain-like (IPR016197),Chromo/Chromo shadow domain (IPR000953),Chromo domain (IPR023780),DNA methylase%2C C-5 cytosine-specific%2C active site (IPR018117);Manual Curation=September 16%2C 2015;Literature_PMID=26243209,19788421;Oryzabase=10401;TENOR=Os10t0104900-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	385226	385343	.	-	.	Parent=Os10t0104900-01
Chr10	irgsp1_rep	CDS	384774	385225	.	-	0	Parent=Os10t0104900-01
Chr10	irgsp1_rep	CDS	384595	384691	.	-	1	Parent=Os10t0104900-01
Chr10	irgsp1_rep	CDS	384079	384186	.	-	0	Parent=Os10t0104900-01
Chr10	irgsp1_rep	CDS	383832	383969	.	-	0	Parent=Os10t0104900-01
Chr10	irgsp1_rep	CDS	383651	383750	.	-	0	Parent=Os10t0104900-01
Chr10	irgsp1_rep	CDS	383338	383534	.	-	2	Parent=Os10t0104900-01
Chr10	irgsp1_rep	CDS	383192	383257	.	-	0	Parent=Os10t0104900-01
Chr10	irgsp1_rep	CDS	382806	383024	.	-	0	Parent=Os10t0104900-01
Chr10	irgsp1_rep	CDS	382663	382721	.	-	0	Parent=Os10t0104900-01
Chr10	irgsp1_rep	CDS	382512	382578	.	-	1	Parent=Os10t0104900-01
Chr10	irgsp1_rep	CDS	382100	382429	.	-	0	Parent=Os10t0104900-01
Chr10	irgsp1_rep	CDS	381956	382024	.	-	0	Parent=Os10t0104900-01
Chr10	irgsp1_rep	CDS	381799	381885	.	-	0	Parent=Os10t0104900-01
Chr10	irgsp1_rep	CDS	381644	381731	.	-	0	Parent=Os10t0104900-01
Chr10	irgsp1_rep	CDS	381383	381504	.	-	2	Parent=Os10t0104900-01
Chr10	irgsp1_rep	CDS	381196	381300	.	-	0	Parent=Os10t0104900-01
Chr10	irgsp1_rep	CDS	378175	378218	.	-	0	Parent=Os10t0104900-01
Chr10	irgsp1_rep	CDS	378025	378094	.	-	1	Parent=Os10t0104900-01
Chr10	irgsp1_rep	CDS	377843	377946	.	-	0	Parent=Os10t0104900-01
Chr10	irgsp1_rep	CDS	377525	377726	.	-	1	Parent=Os10t0104900-01
Chr10	irgsp1_rep	three_prime_UTR	377147	377524	.	-	.	Parent=Os10t0104900-01
Chr10	irgsp1_rep	mRNA	413739	416048	.	-	.	ID=Os10t0105400-01;Name=Os10t0105400-01;Locus_id=Os10g0105400;Note=Hypothetical conserved gene.;Transcript_evidence=AK109229 (DDBJ%2C Best hit);ORF_evidence=Q8SBB1 (UniProt);NIAS_FLcDNA=002-156-F01;TENOR=Os10t0105400-01
Chr10	irgsp1_rep	five_prime_UTR	415932	416048	.	-	.	Parent=Os10t0105400-01
Chr10	irgsp1_rep	CDS	415788	415931	.	-	0	Parent=Os10t0105400-01
Chr10	irgsp1_rep	CDS	413739	414007	.	-	0	Parent=Os10t0105400-01
Chr10	irgsp1_rep	mRNA	406743	416048	.	-	.	ID=Os10t0105400-02;Name=Os10t0105400-02;Locus_id=Os10g0105400;Note=Conserved hypothetical protein.;Transcript_evidence=AK103627 (DDBJ%2C Best hit),AK064283 (DDBJ%2C Best hit);ORF_evidence=B9G597 (UniProt);NIAS_FLcDNA=J033133O13,002-105-G07;TENOR=Os10t0105400-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	415932	416048	.	-	.	Parent=Os10t0105400-02
Chr10	irgsp1_rep	CDS	415788	415931	.	-	0	Parent=Os10t0105400-02
Chr10	irgsp1_rep	CDS	413729	414007	.	-	0	Parent=Os10t0105400-02
Chr10	irgsp1_rep	CDS	413266	413525	.	-	0	Parent=Os10t0105400-02
Chr10	irgsp1_rep	CDS	410745	410886	.	-	1	Parent=Os10t0105400-02
Chr10	irgsp1_rep	CDS	410159	410530	.	-	0	Parent=Os10t0105400-02
Chr10	irgsp1_rep	CDS	409923	410054	.	-	0	Parent=Os10t0105400-02
Chr10	irgsp1_rep	CDS	409158	409286	.	-	0	Parent=Os10t0105400-02
Chr10	irgsp1_rep	CDS	408056	409048	.	-	0	Parent=Os10t0105400-02
Chr10	irgsp1_rep	three_prime_UTR	406743	408055	.	-	.	Parent=Os10t0105400-02
Chr10	irgsp1_rep	mRNA	406770	408692	.	-	.	ID=Os10t0105400-04;Name=Os10t0105400-04;Locus_id=Os10g0105400;Note=Conserved hypothetical protein.;Transcript_evidence=AK072495 (DDBJ%2C Best hit);ORF_evidence=B9G597 (UniProt);NIAS_FLcDNA=J023132L09;TENOR=Os10t0105400-04;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	408692	408692	.	-	.	Parent=Os10t0105400-04
Chr10	irgsp1_rep	CDS	408056	408691	.	-	0	Parent=Os10t0105400-04
Chr10	irgsp1_rep	three_prime_UTR	406770	408055	.	-	.	Parent=Os10t0105400-04
Chr10	irgsp1_rep	mRNA	427319	430563	.	+	.	ID=Os10t0105700-01;Name=Os10t0105700-01;Locus_id=Os10g0105700;Note=Similar to predicted protein.;Transcript_evidence=AK243112 (DDBJ%2C Best hit);ORF_evidence=NP_175036.1 (RefSeq);GO=Biological Process: carboxylic acid metabolic process (GO:0019752),Molecular Function: catalytic activity (GO:0003824),Molecular Function: carboxy-lyase activity (GO:0016831),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent decarboxylase (IPR002129),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424),Pyridoxal-phosphate binding site (IPR021115);NIAS_FLcDNA=J100026L23;TENOR=Os10t0105700-01;KEGG=Os10t0105700-01 (EC:4.1.1.15)
Chr10	irgsp1_rep	five_prime_UTR	427319	427689	.	+	.	Parent=Os10t0105700-01
Chr10	irgsp1_rep	CDS	427690	427711	.	+	0	Parent=Os10t0105700-01
Chr10	irgsp1_rep	CDS	428425	428656	.	+	2	Parent=Os10t0105700-01
Chr10	irgsp1_rep	CDS	429018	429211	.	+	1	Parent=Os10t0105700-01
Chr10	irgsp1_rep	CDS	429332	429465	.	+	2	Parent=Os10t0105700-01
Chr10	irgsp1_rep	CDS	429839	430429	.	+	0	Parent=Os10t0105700-01
Chr10	irgsp1_rep	three_prime_UTR	430430	430563	.	+	.	Parent=Os10t0105700-01
Chr10	irgsp1_rep	mRNA	431802	433551	.	+	.	ID=Os10t0105750-01;Name=Os10t0105750-01;Locus_id=Os10g0105750;Note=Non-protein coding transcript.;Transcript_evidence=AK243012 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090098A15;TENOR=Os10t0105750-01
Chr10	irgsp1_rep	exon	431802	432935	.	+	.	Parent=Os10t0105750-01
Chr10	irgsp1_rep	exon	433079	433551	.	+	.	Parent=Os10t0105750-01
Chr10	irgsp1_rep	mRNA	432006	432323	.	-	.	ID=Os10t0105800-00;Name=Os10t0105800-00;Locus_id=Os10g0105800;Note=Similar to Transferase family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XHE5 (UniProt);InterPro=Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os10t0105800-00;KEGG=Os10t0105800-00
Chr10	irgsp1_rep	CDS	432006	432323	.	-	0	Parent=Os10t0105800-00
Chr10	irgsp1_rep	mRNA	432396	433522	.	-	.	ID=Os10t0105850-00;Name=Os10t0105850-00;Locus_id=Os10g0105850;Note=Similar to Transferase family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XHE5 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os10t0105850-00;KEGG=Os10t0105850-00
Chr10	irgsp1_rep	CDS	433079	433522	.	-	0	Parent=Os10t0105850-00
Chr10	irgsp1_rep	CDS	432396	432935	.	-	0	Parent=Os10t0105850-00
Chr10	irgsp1_rep	mRNA	435646	436611	.	-	.	ID=Os10t0105900-00;Name=Os10t0105900-00;Locus_id=Os10g0105900;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001176003.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os10t0105900-00;KEGG=Os10t0105900-00
Chr10	irgsp1_rep	CDS	435646	436611	.	-	0	Parent=Os10t0105900-00
Chr10	irgsp1_rep	mRNA	437627	438138	.	-	.	ID=Os10t0105933-00;Name=Os10t0105933-00;Locus_id=Os10g0105933;Note=Similar to transferase family protein.;Transcript_evidence=CT835716 (DDBJ%2C Best hit);ORF_evidence=NP_001148798.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os10t0105933-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	438052	438138	.	-	.	Parent=Os10t0105933-00
Chr10	irgsp1_rep	CDS	437941	438051	.	-	0	Parent=Os10t0105933-00
Chr10	irgsp1_rep	CDS	437640	437930	.	-	0	Parent=Os10t0105933-00
Chr10	irgsp1_rep	three_prime_UTR	437627	437639	.	-	.	Parent=Os10t0105933-00
Chr10	irgsp1_rep	mRNA	444530	444696	.	-	.	ID=Os10t0105966-00;Name=Os10t0105966-00;Locus_id=Os10g0105966;Note=Hypothetical conserved gene.;Transcript_evidence=EU947556 (DDBJ);ORF_evidence=B3GAV6 (UniProt);TENOR=Os10t0105966-00;KEGG=Os10t0105966-00
Chr10	irgsp1_rep	CDS	444538	444696	.	-	0	Parent=Os10t0105966-00
Chr10	irgsp1_rep	three_prime_UTR	444530	444537	.	-	.	Parent=Os10t0105966-00
Chr10	irgsp1_rep	mRNA	445128	445571	.	+	.	ID=Os10t0106000-00;Name=Os10t0106000-00;Locus_id=Os10g0106000;Note=Hypothetical protein.;Transcript_evidence=BT035526 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0106000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	445128	445128	.	+	.	Parent=Os10t0106000-00
Chr10	irgsp1_rep	CDS	445129	445571	.	+	0	Parent=Os10t0106000-00
Chr10	irgsp1_rep	mRNA	462959	463381	.	+	.	ID=Os10t0106550-00;Name=Os10t0106550-00;Locus_id=Os10g0106550;Note=Conserved hypothetical protein.;Transcript_evidence=AK105379 (DDBJ%2C Secondary hit);ORF_evidence=Q5Z5P4 (UniProt);TENOR=Os10t0106550-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	462959	463381	.	+	0	Parent=Os10t0106550-00
Chr10	irgsp1_rep	mRNA	468553	469935	.	+	.	ID=Os10t0106600-00;Name=Os10t0106600-00;Locus_id=Os10g0106600;Note=Similar to Transferase family protein.;Transcript_evidence=BT085799 (DDBJ);ORF_evidence=Q33BH9 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os10t0106600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	468553	469935	.	+	0	Parent=Os10t0106600-00
Chr10	irgsp1_rep	mRNA	482683	489472	.	-	.	ID=Os10t0107000-00;Name=Os10t0107000-00;Locus_id=Os10g0107000;Note=Similar to Class III peroxidase 124.;Transcript_evidence=EF059717 (DDBJ);ORF_evidence=Q5U1G9 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255);TENOR=Os10t0107000-00;KEGG=Os10t0107000-00
Chr10	irgsp1_rep	CDS	488975	489472	.	-	0	Parent=Os10t0107000-00
Chr10	irgsp1_rep	CDS	482684	483205	.	-	0	Parent=Os10t0107000-00
Chr10	irgsp1_rep	three_prime_UTR	482683	482683	.	-	.	Parent=Os10t0107000-00
Chr10	irgsp1_rep	mRNA	525915	527290	.	-	.	ID=Os10t0107200-00;Name=Os10t0107200-00;Locus_id=Os10g0107200;Note=Hypothetical protein.;Transcript_evidence=tplb0041e20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0107200-00
Chr10	irgsp1_rep	five_prime_UTR	526839	527290	.	-	.	Parent=Os10t0107200-00
Chr10	irgsp1_rep	CDS	526233	526838	.	-	0	Parent=Os10t0107200-00
Chr10	irgsp1_rep	three_prime_UTR	525915	526232	.	-	.	Parent=Os10t0107200-00
Chr10	irgsp1_rep	mRNA	529428	533602	.	+	.	ID=Os10t0107600-01;Name=Os10t0107600-01;Locus_id=Os10g0107600;Note=Conserved hypothetical protein.;Transcript_evidence=AK103056 (DDBJ%2C Best hit);ORF_evidence=B8ANA7 (UniProt);NIAS_FLcDNA=J033117K01;TENOR=Os10t0107600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	529428	529497	.	+	.	Parent=Os10t0107600-01
Chr10	irgsp1_rep	CDS	529498	529890	.	+	0	Parent=Os10t0107600-01
Chr10	irgsp1_rep	CDS	530003	530065	.	+	0	Parent=Os10t0107600-01
Chr10	irgsp1_rep	three_prime_UTR	530066	530074	.	+	.	Parent=Os10t0107600-01
Chr10	irgsp1_rep	three_prime_UTR	530164	533602	.	+	.	Parent=Os10t0107600-01
Chr10	irgsp1_rep	mRNA	545798	548793	.	-	.	ID=Os10t0107866-01;Name=Os10t0107866-01;Locus_id=Os10g0107866;Note=Non-protein coding transcript.;Transcript_evidence=AK241526 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065171B21;TENOR=Os10t0107866-01
Chr10	irgsp1_rep	exon	548479	548793	.	-	.	Parent=Os10t0107866-01
Chr10	irgsp1_rep	exon	547402	547458	.	-	.	Parent=Os10t0107866-01
Chr10	irgsp1_rep	exon	545798	546086	.	-	.	Parent=Os10t0107866-01
Chr10	irgsp1_rep	mRNA	583024	584651	.	+	.	ID=Os10t0108700-01;Name=Os10t0108700-01;Locus_id=Os10g0108700;CGSNL Gene Symbol=AT15;CGSNL Gene Name=ACYLTRANSFERASE 15;Oryzabase Gene Symbol Synonym(s)=OsAT15%2C OsAt15;Oryzabase Gene Name Synonym(s)=acyltransferase 15;Note=Transferase family protein.;Transcript_evidence=AK060060 (DDBJ%2C Best hit);ORF_evidence=Q8S7Z5 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=006-305-F11;Oryzabase=11747;Expression=AK060060;TENOR=Os10t0108700-01;KEGG=Os10t0108700-01
Chr10	irgsp1_rep	five_prime_UTR	583024	583087	.	+	.	Parent=Os10t0108700-01
Chr10	irgsp1_rep	five_prime_UTR	583212	583237	.	+	.	Parent=Os10t0108700-01
Chr10	irgsp1_rep	CDS	583238	584542	.	+	0	Parent=Os10t0108700-01
Chr10	irgsp1_rep	three_prime_UTR	584543	584651	.	+	.	Parent=Os10t0108700-01
Chr10	irgsp1_rep	mRNA	583210	584657	.	+	.	ID=Os10t0108700-02;Name=Os10t0108700-02;Locus_id=Os10g0108700;CGSNL Gene Symbol=AT15;CGSNL Gene Name=ACYLTRANSFERASE 15;Oryzabase Gene Symbol Synonym(s)=OsAT15%2C OsAt15;Oryzabase Gene Name Synonym(s)=acyltransferase 15;Note=Transferase family protein.;Transcript_evidence=AK060361 (DDBJ%2C Best hit);ORF_evidence=Q8S7Z5 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=001-008-H07;Oryzabase=11747;Expression=AK060361;TENOR=Os10t0108700-02;KEGG=Os10t0108700-02
Chr10	irgsp1_rep	five_prime_UTR	583210	583237	.	+	.	Parent=Os10t0108700-02
Chr10	irgsp1_rep	CDS	583238	584542	.	+	0	Parent=Os10t0108700-02
Chr10	irgsp1_rep	three_prime_UTR	584543	584657	.	+	.	Parent=Os10t0108700-02
Chr10	irgsp1_rep	mRNA	591332	592370	.	-	.	ID=Os10t0108750-00;Name=Os10t0108750-00;Locus_id=Os10g0108750;Note=Hypothetical protein.;Transcript_evidence=tplb0046e19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0108750-00
Chr10	irgsp1_rep	five_prime_UTR	592370	592370	.	-	.	Parent=Os10t0108750-00
Chr10	irgsp1_rep	CDS	591923	592369	.	-	0	Parent=Os10t0108750-00
Chr10	irgsp1_rep	three_prime_UTR	591332	591922	.	-	.	Parent=Os10t0108750-00
Chr10	irgsp1_rep	mRNA	591332	592675	.	+	.	ID=Os10t0108800-00;Name=Os10t0108800-00;Locus_id=Os10g0108800;CGSNL Gene Symbol=AT13;CGSNL Gene Name=ACYLTRANSFERASE 13;Oryzabase Gene Symbol Synonym(s)=OsAT13%2C OsAt13;Oryzabase Gene Name Synonym(s)=acyltransferase 13;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8S7Z4 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);Oryzabase=11745;TENOR=Os10t0108800-00;KEGG=Os10t0108800-00
Chr10	irgsp1_rep	CDS	591332	592675	.	+	0	Parent=Os10t0108800-00
Chr10	irgsp1_rep	mRNA	631995	633265	.	-	.	ID=Os10t0109066-00;Name=Os10t0109066-00;Locus_id=Os10g0109066;Note=Hypothetical protein.;Transcript_evidence=tplb0041e20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0109066-00
Chr10	irgsp1_rep	five_prime_UTR	632718	633265	.	-	.	Parent=Os10t0109066-00
Chr10	irgsp1_rep	CDS	632421	632717	.	-	0	Parent=Os10t0109066-00
Chr10	irgsp1_rep	three_prime_UTR	631995	632420	.	-	.	Parent=Os10t0109066-00
Chr10	irgsp1_rep	mRNA	655625	658866	.	-	.	ID=Os10t0109300-01;Name=Os10t0109300-01;Locus_id=Os10g0109300;Oryzabase Gene Symbol Synonym(s)=prx125%2C PRX125%2C OsPRX125;Oryzabase Gene Name Synonym(s)=class III peroxidase 125;Note=Similar to Peroxidase (EC 1.11.1.7).;Transcript_evidence=AK061462 (DDBJ%2C Best hit),AK104730 (DDBJ%2C Best hit);ORF_evidence=B6T7B1 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793);NIAS_FLcDNA=006-308-B11,001-038-C06;Oryzabase=14642;Expression=AK061462;TENOR=Os10t0109300-01;KEGG=Os10t0109300-01 (EC:1.11.1.7)
Chr10	irgsp1_rep	five_prime_UTR	658808	658866	.	-	.	Parent=Os10t0109300-01
Chr10	irgsp1_rep	CDS	658382	658807	.	-	0	Parent=Os10t0109300-01
Chr10	irgsp1_rep	CDS	656514	656676	.	-	0	Parent=Os10t0109300-01
Chr10	irgsp1_rep	CDS	656002	656423	.	-	2	Parent=Os10t0109300-01
Chr10	irgsp1_rep	three_prime_UTR	655625	656001	.	-	.	Parent=Os10t0109300-01
Chr10	irgsp1_rep	mRNA	655625	658801	.	-	.	ID=Os10t0109300-02;Name=Os10t0109300-02;Locus_id=Os10g0109300;Oryzabase Gene Symbol Synonym(s)=prx125%2C PRX125%2C OsPRX125;Oryzabase Gene Name Synonym(s)=class III peroxidase 125;Note=Similar to Peroxidase 54.;Transcript_evidence=AK104633 (DDBJ%2C Best hit);ORF_evidence=B6T7B1 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793);NIAS_FLcDNA=006-310-C08;Oryzabase=14642;TENOR=Os10t0109300-02
Chr10	irgsp1_rep	CDS	658382	658801	.	-	0	Parent=Os10t0109300-02
Chr10	irgsp1_rep	CDS	656514	656676	.	-	0	Parent=Os10t0109300-02
Chr10	irgsp1_rep	CDS	656002	656423	.	-	2	Parent=Os10t0109300-02
Chr10	irgsp1_rep	three_prime_UTR	655625	656001	.	-	.	Parent=Os10t0109300-02
Chr10	irgsp1_rep	mRNA	677177	678880	.	-	.	ID=Os10t0109600-01;Name=Os10t0109600-01;Locus_id=Os10g0109600;CGSNL Gene Symbol=POXA;CGSNL Gene Name=PEROXIDASE A;Oryzabase Gene Symbol Synonym(s)=poxA%2C prx126%2C OsPrx126%2C prxRPA%2C RPA;Oryzabase Gene Name Synonym(s)=Peroxidase A%2C class III peroxidase 126;Note=Peroxidase (EC 1.11.1.7).;Transcript_evidence=AK099448 (DDBJ%2C Best hit);ORF_evidence=Q9SMG8 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J013021P04;Oryzabase=13037;TENOR=Os10t0109600-01
Chr10	irgsp1_rep	five_prime_UTR	678842	678880	.	-	.	Parent=Os10t0109600-01
Chr10	irgsp1_rep	CDS	678620	678841	.	-	0	Parent=Os10t0109600-01
Chr10	irgsp1_rep	CDS	678325	678507	.	-	0	Parent=Os10t0109600-01
Chr10	irgsp1_rep	CDS	678053	678218	.	-	0	Parent=Os10t0109600-01
Chr10	irgsp1_rep	CDS	677349	677758	.	-	2	Parent=Os10t0109600-01
Chr10	irgsp1_rep	three_prime_UTR	677177	677348	.	-	.	Parent=Os10t0109600-01
Chr10	irgsp1_rep	mRNA	677177	678858	.	-	.	ID=Os10t0109600-02;Name=Os10t0109600-02;Locus_id=Os10g0109600;CGSNL Gene Symbol=POXA;CGSNL Gene Name=PEROXIDASE A;Oryzabase Gene Symbol Synonym(s)=poxA%2C prx126%2C OsPrx126%2C prxRPA%2C RPA;Oryzabase Gene Name Synonym(s)=Peroxidase A%2C class III peroxidase 126;Note=Peroxidase (EC 1.11.1.7).;Transcript_evidence=AK061206 (DDBJ%2C Best hit);ORF_evidence=Q9SMG8 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=006-210-B12;Oryzabase=13037;TENOR=Os10t0109600-02
Chr10	irgsp1_rep	five_prime_UTR	678842	678858	.	-	.	Parent=Os10t0109600-02
Chr10	irgsp1_rep	CDS	678620	678841	.	-	0	Parent=Os10t0109600-02
Chr10	irgsp1_rep	CDS	678325	678507	.	-	0	Parent=Os10t0109600-02
Chr10	irgsp1_rep	CDS	678053	678218	.	-	0	Parent=Os10t0109600-02
Chr10	irgsp1_rep	CDS	677349	677758	.	-	2	Parent=Os10t0109600-02
Chr10	irgsp1_rep	three_prime_UTR	677177	677348	.	-	.	Parent=Os10t0109600-02
Chr10	irgsp1_rep	mRNA	680099	683038	.	-	.	ID=Os10t0109700-00;Name=Os10t0109700-00;Locus_id=Os10g0109700;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Similar to POT family protein.;Transcript_evidence=BT053880 (DDBJ);ORF_evidence=Q7XHB0 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);Oryzabase=23679;TENOR=Os10t0109700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	682583	683038	.	-	0	Parent=Os10t0109700-00
Chr10	irgsp1_rep	CDS	680099	681394	.	-	0	Parent=Os10t0109700-00
Chr10	irgsp1_rep	mRNA	680114	682854	.	+	.	ID=Os10t0109750-00;Name=Os10t0109750-00;Locus_id=Os10g0109750;Note=Hypothetical protein.;Transcript_evidence=tplb0038k08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0109750-00
Chr10	irgsp1_rep	five_prime_UTR	680114	680257	.	+	.	Parent=Os10t0109750-00
Chr10	irgsp1_rep	CDS	680258	680515	.	+	0	Parent=Os10t0109750-00
Chr10	irgsp1_rep	three_prime_UTR	680516	681383	.	+	.	Parent=Os10t0109750-00
Chr10	irgsp1_rep	three_prime_UTR	682600	682854	.	+	.	Parent=Os10t0109750-00
Chr10	irgsp1_rep	mRNA	687496	689598	.	+	.	ID=Os10t0109801-01;Name=Os10t0109801-01;Locus_id=Os10g0109801;Note=Non-protein coding transcript.;Transcript_evidence=AK288596 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090051L19;TENOR=Os10t0109801-01
Chr10	irgsp1_rep	exon	687496	689598	.	+	.	Parent=Os10t0109801-01
Chr10	irgsp1_rep	mRNA	689474	691847	.	-	.	ID=Os10t0109900-00;Name=Os10t0109900-00;Locus_id=Os10g0109900;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Major facilitator superfamily%2C general substrate transporter domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XHA8 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);Oryzabase=23680;TENOR=Os10t0109900-00;KEGG=Os10t0109900-00
Chr10	irgsp1_rep	CDS	691794	691847	.	-	0	Parent=Os10t0109900-00
Chr10	irgsp1_rep	CDS	691546	691645	.	-	0	Parent=Os10t0109900-00
Chr10	irgsp1_rep	CDS	691227	691444	.	-	2	Parent=Os10t0109900-00
Chr10	irgsp1_rep	CDS	690588	691123	.	-	0	Parent=Os10t0109900-00
Chr10	irgsp1_rep	CDS	689474	690275	.	-	1	Parent=Os10t0109900-00
Chr10	irgsp1_rep	mRNA	745131	745369	.	+	.	ID=Os10t0110075-00;Name=Os10t0110075-00;Locus_id=Os10g0110075;Note=Non-protein coding transcript.;Transcript_evidence=BT086891 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0110075-00
Chr10	irgsp1_rep	exon	745131	745369	.	+	.	Parent=Os10t0110075-00
Chr10	irgsp1_rep	mRNA	745645	746152	.	-	.	ID=Os10t0110250-00;Name=Os10t0110250-00;Locus_id=Os10g0110250;Note=Oligopeptide transporter domain containing protein.;Transcript_evidence=FP095530 (DDBJ);ORF_evidence=longestORF;GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109);TENOR=Os10t0110250-00
Chr10	irgsp1_rep	five_prime_UTR	746141	746152	.	-	.	Parent=Os10t0110250-00
Chr10	irgsp1_rep	CDS	745793	746140	.	-	0	Parent=Os10t0110250-00
Chr10	irgsp1_rep	three_prime_UTR	745645	745792	.	-	.	Parent=Os10t0110250-00
Chr10	irgsp1_rep	mRNA	762068	764426	.	+	.	ID=Os10t0110425-00;Name=Os10t0110425-00;Locus_id=Os10g0110425;Note=Hypothetical protein.;Transcript_evidence=tplb0038k08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0110425-00
Chr10	irgsp1_rep	CDS	762068	762859	.	+	0	Parent=Os10t0110425-00
Chr10	irgsp1_rep	three_prime_UTR	762860	762897	.	+	.	Parent=Os10t0110425-00
Chr10	irgsp1_rep	three_prime_UTR	764069	764426	.	+	.	Parent=Os10t0110425-00
Chr10	irgsp1_rep	mRNA	762143	764676	.	-	.	ID=Os10t0110600-01;Name=Os10t0110600-01;Locus_id=Os10g0110600;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Similar to cDNA clone:J023063N08%2C full insert sequence.;Transcript_evidence=AK288351 (DDBJ%2C Best hit);ORF_evidence=Q7XH99 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J090024C17;Oryzabase=23681;TENOR=Os10t0110600-01;KEGG=Os10t0110600-01
Chr10	irgsp1_rep	five_prime_UTR	764547	764676	.	-	.	Parent=Os10t0110600-01
Chr10	irgsp1_rep	CDS	763845	764546	.	-	0	Parent=Os10t0110600-01
Chr10	irgsp1_rep	three_prime_UTR	762143	763844	.	-	.	Parent=Os10t0110600-01
Chr10	irgsp1_rep	mRNA	771699	776341	.	-	.	ID=Os10t0110800-01;Name=Os10t0110800-01;Locus_id=Os10g0110800;Oryzabase Gene Symbol Synonym(s)=PTR%2C PTR;Oryzabase Gene Name Synonym(s)=peptide transporter%2C peptide transporter;Note=Similar to Nitrate transporter (Fragment).;Transcript_evidence=AK070621 (DDBJ%2C Best hit);ORF_evidence=B6U0T7 (UniProt);InterPro=Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J023063N08;Oryzabase=23682,23683;Expression=AK070621;TENOR=Os10t0110800-01;KEGG=Os10t0110800-01
Chr10	irgsp1_rep	five_prime_UTR	776235	776341	.	-	.	Parent=Os10t0110800-01
Chr10	irgsp1_rep	five_prime_UTR	775386	775487	.	-	.	Parent=Os10t0110800-01
Chr10	irgsp1_rep	CDS	775329	775385	.	-	0	Parent=Os10t0110800-01
Chr10	irgsp1_rep	CDS	775004	775106	.	-	0	Parent=Os10t0110800-01
Chr10	irgsp1_rep	CDS	774655	774905	.	-	2	Parent=Os10t0110800-01
Chr10	irgsp1_rep	three_prime_UTR	774069	774654	.	-	.	Parent=Os10t0110800-01
Chr10	irgsp1_rep	three_prime_UTR	771699	772689	.	-	.	Parent=Os10t0110800-01
Chr10	irgsp1_rep	mRNA	771731	774213	.	-	.	ID=Os10t0110800-02;Name=Os10t0110800-02;Locus_id=Os10g0110800;Oryzabase Gene Symbol Synonym(s)=PTR%2C PTR;Oryzabase Gene Name Synonym(s)=peptide transporter%2C peptide transporter;Note=Similar to cDNA clone:J023063N08%2C full insert sequence.;Transcript_evidence=AK071280 (DDBJ%2C Best hit);ORF_evidence=Q7XH99 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109);NIAS_FLcDNA=J023086C03;Oryzabase=23682,23683;Expression=AK071280;TENOR=Os10t0110800-02;KEGG=Os10t0110800-02
Chr10	irgsp1_rep	five_prime_UTR	774212	774213	.	-	.	Parent=Os10t0110800-02
Chr10	irgsp1_rep	CDS	774069	774211	.	-	0	Parent=Os10t0110800-02
Chr10	irgsp1_rep	CDS	771894	772689	.	-	1	Parent=Os10t0110800-02
Chr10	irgsp1_rep	three_prime_UTR	771731	771893	.	-	.	Parent=Os10t0110800-02
Chr10	irgsp1_rep	mRNA	771925	775109	.	+	.	ID=Os10t0110950-00;Name=Os10t0110950-00;Locus_id=Os10g0110950;Note=Hypothetical protein.;Transcript_evidence=tplb0058e01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0110950-00
Chr10	irgsp1_rep	five_prime_UTR	771925	772434	.	+	.	Parent=Os10t0110950-00
Chr10	irgsp1_rep	CDS	772435	772710	.	+	0	Parent=Os10t0110950-00
Chr10	irgsp1_rep	CDS	774109	774390	.	+	0	Parent=Os10t0110950-00
Chr10	irgsp1_rep	three_prime_UTR	774391	774564	.	+	.	Parent=Os10t0110950-00
Chr10	irgsp1_rep	three_prime_UTR	774659	774914	.	+	.	Parent=Os10t0110950-00
Chr10	irgsp1_rep	three_prime_UTR	775015	775109	.	+	.	Parent=Os10t0110950-00
Chr10	irgsp1_rep	mRNA	787911	791157	.	-	.	ID=Os10t0111300-01;Name=Os10t0111300-01;Locus_id=Os10g0111300;Note=Similar to Nitrate transporter (Fragment).;Transcript_evidence=AK068679 (DDBJ%2C Best hit);ORF_evidence=B9G781 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J013160C22;Expression=AK068679;TENOR=Os10t0111300-01;KEGG=Os10t0111300-01
Chr10	irgsp1_rep	five_prime_UTR	791016	791157	.	-	.	Parent=Os10t0111300-01
Chr10	irgsp1_rep	CDS	790950	791015	.	-	0	Parent=Os10t0111300-01
Chr10	irgsp1_rep	CDS	790712	790817	.	-	0	Parent=Os10t0111300-01
Chr10	irgsp1_rep	CDS	790376	790593	.	-	2	Parent=Os10t0111300-01
Chr10	irgsp1_rep	CDS	789645	790029	.	-	0	Parent=Os10t0111300-01
Chr10	irgsp1_rep	CDS	788123	788871	.	-	2	Parent=Os10t0111300-01
Chr10	irgsp1_rep	three_prime_UTR	787911	788122	.	-	.	Parent=Os10t0111300-01
Chr10	irgsp1_rep	mRNA	788180	789949	.	+	.	ID=Os10t0111325-00;Name=Os10t0111325-00;Locus_id=Os10g0111325;Note=Hypothetical protein.;Transcript_evidence=tplb0038k08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0111325-00
Chr10	irgsp1_rep	CDS	788180	788914	.	+	0	Parent=Os10t0111325-00
Chr10	irgsp1_rep	three_prime_UTR	788915	788944	.	+	.	Parent=Os10t0111325-00
Chr10	irgsp1_rep	three_prime_UTR	789503	789949	.	+	.	Parent=Os10t0111325-00
Chr10	irgsp1_rep	mRNA	790406	791375	.	+	.	ID=Os10t0111350-01;Name=Os10t0111350-01;Locus_id=Os10g0111350;Note=Non-protein coding transcript.;Transcript_evidence=AK066625 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013068M11;TENOR=Os10t0111350-01
Chr10	irgsp1_rep	exon	790406	791375	.	+	.	Parent=Os10t0111350-01
Chr10	irgsp1_rep	mRNA	794387	799383	.	-	.	ID=Os10t0111400-00;Name=Os10t0111400-00;Locus_id=Os10g0111400;CGSNL Gene Symbol=WAK95;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 95;Oryzabase Gene Symbol Synonym(s)=OsWAK95;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=AK366431 (DDBJ);ORF_evidence=Q7XGR2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=EGF-type aspartate/asparagine hydroxylation site (IPR000152),Protein kinase%2C catalytic domain (IPR000719),Epidermal growth factor-like%2C type 3 (IPR000742),EGF-like calcium-binding (IPR001881),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EGF-like calcium-binding%2C conserved site (IPR018097);Oryzabase=8015;TENOR=Os10t0111400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	799369	799383	.	-	.	Parent=Os10t0111400-00
Chr10	irgsp1_rep	CDS	798447	799368	.	-	0	Parent=Os10t0111400-00
Chr10	irgsp1_rep	CDS	797949	798116	.	-	2	Parent=Os10t0111400-00
Chr10	irgsp1_rep	CDS	794387	795510	.	-	2	Parent=Os10t0111400-00
Chr10	irgsp1_rep	mRNA	794527	799313	.	+	.	ID=Os10t0111550-00;Name=Os10t0111550-00;Locus_id=Os10g0111550;Note=Non-protein coding transcript.;Transcript_evidence=tplb0044f04 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os10t0111550-00
Chr10	irgsp1_rep	exon	794527	795503	.	+	.	Parent=Os10t0111550-00
Chr10	irgsp1_rep	exon	797941	798098	.	+	.	Parent=Os10t0111550-00
Chr10	irgsp1_rep	exon	798443	799313	.	+	.	Parent=Os10t0111550-00
Chr10	irgsp1_rep	mRNA	806037	809751	.	-	.	ID=Os10t0111700-01;Name=Os10t0111700-01;Locus_id=Os10g0111700;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Similar to POT family protein%2C expressed.;Transcript_evidence=AK069771 (DDBJ%2C Best hit);ORF_evidence=Q33BF9 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J023028O11;Oryzabase=23684;TENOR=Os10t0111700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	809751	809751	.	-	.	Parent=Os10t0111700-01
Chr10	irgsp1_rep	CDS	809715	809750	.	-	0	Parent=Os10t0111700-01
Chr10	irgsp1_rep	CDS	808781	808883	.	-	0	Parent=Os10t0111700-01
Chr10	irgsp1_rep	CDS	808470	808687	.	-	2	Parent=Os10t0111700-01
Chr10	irgsp1_rep	CDS	807851	808386	.	-	0	Parent=Os10t0111700-01
Chr10	irgsp1_rep	CDS	806164	806989	.	-	1	Parent=Os10t0111700-01
Chr10	irgsp1_rep	three_prime_UTR	806037	806163	.	-	.	Parent=Os10t0111700-01
Chr10	irgsp1_rep	mRNA	806069	809716	.	-	.	ID=Os10t0111700-02;Name=Os10t0111700-02;Locus_id=Os10g0111700;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Similar to POT family protein%2C expressed.;Transcript_evidence=AK065457 (DDBJ%2C Best hit);ORF_evidence=Q33BF9 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J013022B11;Oryzabase=23684;Expression=AK065457;TENOR=Os10t0111700-02;KEGG=Os10t0111700-02
Chr10	irgsp1_rep	five_prime_UTR	808890	809716	.	-	.	Parent=Os10t0111700-02
Chr10	irgsp1_rep	CDS	808781	808889	.	-	0	Parent=Os10t0111700-02
Chr10	irgsp1_rep	CDS	808470	808687	.	-	2	Parent=Os10t0111700-02
Chr10	irgsp1_rep	CDS	807851	808386	.	-	0	Parent=Os10t0111700-02
Chr10	irgsp1_rep	CDS	806435	806989	.	-	1	Parent=Os10t0111700-02
Chr10	irgsp1_rep	CDS	806319	806376	.	-	1	Parent=Os10t0111700-02
Chr10	irgsp1_rep	three_prime_UTR	806069	806318	.	-	.	Parent=Os10t0111700-02
Chr10	irgsp1_rep	mRNA	812985	813705	.	+	.	ID=Os10t0111800-01;Name=Os10t0111800-01;Locus_id=Os10g0111800;Note=Hypothetical protein.;Transcript_evidence=AK106867 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-118-D02;Expression=AK106867;TENOR=Os10t0111800-01;KEGG=Os10t0111800-01
Chr10	irgsp1_rep	five_prime_UTR	812985	813156	.	+	.	Parent=Os10t0111800-01
Chr10	irgsp1_rep	CDS	813157	813630	.	+	0	Parent=Os10t0111800-01
Chr10	irgsp1_rep	three_prime_UTR	813631	813705	.	+	.	Parent=Os10t0111800-01
Chr10	irgsp1_rep	mRNA	816230	821705	.	-	.	ID=Os10t0111850-00;Name=Os10t0111850-00;Locus_id=Os10g0111850;Note=Non-protein coding transcript.;Transcript_evidence=tplb0044f04 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os10t0111850-00
Chr10	irgsp1_rep	exon	820799	821705	.	-	.	Parent=Os10t0111850-00
Chr10	irgsp1_rep	exon	819863	820091	.	-	.	Parent=Os10t0111850-00
Chr10	irgsp1_rep	exon	816230	817205	.	-	.	Parent=Os10t0111850-00
Chr10	irgsp1_rep	mRNA	816245	821884	.	+	.	ID=Os10t0111900-00;Name=Os10t0111900-00;Locus_id=Os10g0111900;CGSNL Gene Symbol=WAK96/97;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 96/97;Oryzabase Gene Symbol Synonym(s)=OsWAK96/97%2C OsWAK96%2C OsWAK97;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=AK366431 (DDBJ);ORF_evidence=Q7XGR2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),EGF-like calcium-binding (IPR001881),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=8016;TENOR=Os10t0111900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	816245	816249	.	+	.	Parent=Os10t0111900-00
Chr10	irgsp1_rep	CDS	816250	817185	.	+	0	Parent=Os10t0111900-00
Chr10	irgsp1_rep	CDS	819842	820004	.	+	0	Parent=Os10t0111900-00
Chr10	irgsp1_rep	CDS	820722	821884	.	+	2	Parent=Os10t0111900-00
Chr10	irgsp1_rep	mRNA	824835	826309	.	-	.	ID=Os10t0112100-01;Name=Os10t0112100-01;Locus_id=Os10g0112100;RAP-DB Gene Symbol Synonym(s)=OsFWL5%2C OsPcr1%2C PCR1%2C OsPCR1;RAP-DB Gene Name Synonym(s)=FW2.2-like 5%2C Plant cadmium resistance 1;CGSNL Gene Symbol=PCR1;CGSNL Gene Name=PLANT CADMIUM RESISTANCE 1;Oryzabase Gene Symbol Synonym(s)=OsFWL5%2C FWL5%2C OsPcr1%2C OsPCR1%2C OsFWL5/OsPCR1;Oryzabase Gene Name Synonym(s)=FW2.2-like 5%2C fruit-weight 2.2-like 5%2C Plant cadmium resistance 1;Note=Member of the PLAC8 domain-containing protein family%2C Maintenance of metal ion homeostasis and grain weight%2C Negative regulation of plant height;Transcript_evidence=AK108480;ORF_evidence=Q33BF6;InterPro=PLAC8 motif-containing protein (IPR006461);NIAS_FLcDNA=002-143-F03;Manual Curation=December 2%2C 2016;Literature_PMID=25854544,23793979;Oryzabase=13474;Expression=AK108480;TENOR=Os10t0112100-01;KEGG=Os10t0112100-01
Chr10	irgsp1_rep	five_prime_UTR	826238	826309	.	-	.	Parent=Os10t0112100-01
Chr10	irgsp1_rep	CDS	826048	826237	.	-	0	Parent=Os10t0112100-01
Chr10	irgsp1_rep	CDS	825809	825880	.	-	2	Parent=Os10t0112100-01
Chr10	irgsp1_rep	CDS	825463	825681	.	-	2	Parent=Os10t0112100-01
Chr10	irgsp1_rep	CDS	824983	825062	.	-	2	Parent=Os10t0112100-01
Chr10	irgsp1_rep	three_prime_UTR	824835	824982	.	-	.	Parent=Os10t0112100-01
Chr10	irgsp1_rep	mRNA	836753	838994	.	+	.	ID=Os10t0112500-00;Name=Os10t0112500-00;Locus_id=Os10g0112500;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Similar to POT family protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7G761 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),PTR2 family proton/oligopeptide symporter%2C conserved site (IPR018456);Oryzabase=23685;TENOR=Os10t0112500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	836753	837109	.	+	0	Parent=Os10t0112500-00
Chr10	irgsp1_rep	CDS	837681	838994	.	+	0	Parent=Os10t0112500-00
Chr10	irgsp1_rep	mRNA	840130	843850	.	-	.	ID=Os10t0112600-01;Name=Os10t0112600-01;Locus_id=Os10g0112600;Note=Nonaspanin (TM9SF) family protein.;Transcript_evidence=AK099727 (DDBJ%2C Best hit);ORF_evidence=B6TZ24 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Nonaspanin (TM9SF) (IPR004240);NIAS_FLcDNA=J013089E14;Expression=AK099727;TENOR=Os10t0112600-01;KEGG=Os10t0112600-01
Chr10	irgsp1_rep	five_prime_UTR	843811	843850	.	-	.	Parent=Os10t0112600-01
Chr10	irgsp1_rep	CDS	843671	843810	.	-	0	Parent=Os10t0112600-01
Chr10	irgsp1_rep	CDS	842970	843010	.	-	1	Parent=Os10t0112600-01
Chr10	irgsp1_rep	CDS	842119	842695	.	-	2	Parent=Os10t0112600-01
Chr10	irgsp1_rep	CDS	841779	841916	.	-	1	Parent=Os10t0112600-01
Chr10	irgsp1_rep	CDS	841532	841688	.	-	1	Parent=Os10t0112600-01
Chr10	irgsp1_rep	CDS	840928	841412	.	-	0	Parent=Os10t0112600-01
Chr10	irgsp1_rep	CDS	840466	840685	.	-	1	Parent=Os10t0112600-01
Chr10	irgsp1_rep	three_prime_UTR	840130	840465	.	-	.	Parent=Os10t0112600-01
Chr10	irgsp1_rep	mRNA	848170	850210	.	-	.	ID=Os10t0112700-01;Name=Os10t0112700-01;Locus_id=Os10g0112700;CGSNL Gene Symbol=WAK98;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 98;Oryzabase Gene Symbol Synonym(s)=OsWAK98%2C OsRLCK287%2C RLCK287;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 287;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK105108 (DDBJ%2C Best hit);ORF_evidence=B9G787 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=001-100-F06;Oryzabase=8017;Expression=AK105108;TENOR=Os10t0112700-01;KEGG=Os10t0112700-01
Chr10	irgsp1_rep	five_prime_UTR	850209	850210	.	-	.	Parent=Os10t0112700-01
Chr10	irgsp1_rep	CDS	848424	850208	.	-	0	Parent=Os10t0112700-01
Chr10	irgsp1_rep	three_prime_UTR	848170	848423	.	-	.	Parent=Os10t0112700-01
Chr10	irgsp1_rep	mRNA	848469	850402	.	+	.	ID=Os10t0112850-00;Name=Os10t0112850-00;Locus_id=Os10g0112850;Note=Non-protein coding transcript.;Transcript_evidence=tplb0032f19 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os10t0112850-00
Chr10	irgsp1_rep	exon	848469	849367	.	+	.	Parent=Os10t0112850-00
Chr10	irgsp1_rep	exon	849421	850402	.	+	.	Parent=Os10t0112850-00
Chr10	irgsp1_rep	mRNA	866391	868385	.	+	.	ID=Os10t0113000-01;Name=Os10t0113000-01;Locus_id=Os10g0113000;Oryzabase Gene Name Synonym(s)=Alcohol dehydrogenase (NADP(+));Note=Similar to Chalcone reductase homologue (Fragment).;Transcript_evidence=AK102609 (DDBJ%2C Best hit),AK061106 (DDBJ%2C Best hit),AK109414 (DDBJ%2C Best hit);ORF_evidence=Q0PCF4 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldo/keto reductase (IPR001395),Aldo/keto reductase%2C conserved site (IPR018170),Aldo/keto reductase subgroup (IPR020471),NADP-dependent oxidoreductase domain (IPR023210);NIAS_FLcDNA=J033099C09,006-207-B11,006-304-B07;Oryzabase=16686;TENOR=Os10t0113000-01
Chr10	irgsp1_rep	five_prime_UTR	866391	866438	.	+	.	Parent=Os10t0113000-01
Chr10	irgsp1_rep	CDS	866439	867179	.	+	0	Parent=Os10t0113000-01
Chr10	irgsp1_rep	CDS	867961	868185	.	+	0	Parent=Os10t0113000-01
Chr10	irgsp1_rep	three_prime_UTR	868186	868385	.	+	.	Parent=Os10t0113000-01
Chr10	irgsp1_rep	mRNA	868188	868564	.	+	.	ID=Os10t0113000-02;Name=Os10t0113000-02;Locus_id=Os10g0113000;Oryzabase Gene Name Synonym(s)=Alcohol dehydrogenase (NADP(+));Note=Non-protein coding transcript.;Transcript_evidence=AK059636 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-031-A09;Oryzabase=16686;TENOR=Os10t0113000-02
Chr10	irgsp1_rep	exon	868188	868564	.	+	.	Parent=Os10t0113000-02
Chr10	irgsp1_rep	mRNA	866451	867181	.	-	.	ID=Os10t0113050-00;Name=Os10t0113050-00;Locus_id=Os10g0113050;Note=Hypothetical gene.;Transcript_evidence=EU946224 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0113050-00;KEGG=Os10t0113050-00
Chr10	irgsp1_rep	five_prime_UTR	867180	867181	.	-	.	Parent=Os10t0113050-00
Chr10	irgsp1_rep	CDS	866451	867179	.	-	0	Parent=Os10t0113050-00
Chr10	irgsp1_rep	mRNA	869491	870947	.	+	.	ID=Os10t0113100-01;Name=Os10t0113100-01;Locus_id=Os10g0113100;Note=Aldo/keto reductase family protein.;Transcript_evidence=AK103772 (DDBJ%2C Best hit);ORF_evidence=B7E5T4 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldo/keto reductase (IPR001395),Aldo/keto reductase%2C conserved site (IPR018170),Aldo/keto reductase subgroup (IPR020471),NADP-dependent oxidoreductase domain (IPR023210);NIAS_FLcDNA=J033143K18;Expression=AK103772;TENOR=Os10t0113100-01;KEGG=Os10t0113100-01
Chr10	irgsp1_rep	five_prime_UTR	869491	869514	.	+	.	Parent=Os10t0113100-01
Chr10	irgsp1_rep	CDS	869515	870261	.	+	0	Parent=Os10t0113100-01
Chr10	irgsp1_rep	CDS	870512	870733	.	+	0	Parent=Os10t0113100-01
Chr10	irgsp1_rep	three_prime_UTR	870734	870947	.	+	.	Parent=Os10t0113100-01
Chr10	irgsp1_rep	mRNA	869538	870880	.	+	.	ID=Os10t0113100-02;Name=Os10t0113100-02;Locus_id=Os10g0113100;Note=Similar to cDNA clone:J033143K18%2C full insert sequence.;Transcript_evidence=AK059942 (DDBJ%2C Best hit);ORF_evidence=B7E5T4 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldo/keto reductase (IPR001395),Aldo/keto reductase%2C conserved site (IPR018170),Aldo/keto reductase subgroup (IPR020471),NADP-dependent oxidoreductase domain (IPR023210);NIAS_FLcDNA=006-210-F11;Expression=AK059942;TENOR=Os10t0113100-02;KEGG=Os10t0113100-02
Chr10	irgsp1_rep	five_prime_UTR	869538	869538	.	+	.	Parent=Os10t0113100-02
Chr10	irgsp1_rep	CDS	869539	870261	.	+	0	Parent=Os10t0113100-02
Chr10	irgsp1_rep	CDS	870512	870733	.	+	0	Parent=Os10t0113100-02
Chr10	irgsp1_rep	three_prime_UTR	870734	870880	.	+	.	Parent=Os10t0113100-02
Chr10	irgsp1_rep	mRNA	869533	870263	.	-	.	ID=Os10t0113201-00;Name=Os10t0113201-00;Locus_id=Os10g0113201;Note=Hypothetical gene.;Transcript_evidence=EU946224 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0113201-00;KEGG=Os10t0113201-00
Chr10	irgsp1_rep	five_prime_UTR	870262	870263	.	-	.	Parent=Os10t0113201-00
Chr10	irgsp1_rep	CDS	869533	870261	.	-	0	Parent=Os10t0113201-00
Chr10	irgsp1_rep	mRNA	882041	883238	.	+	.	ID=Os10t0113375-00;Name=Os10t0113375-00;Locus_id=Os10g0113375;Note=Aldo/keto reductase domain containing protein.;Transcript_evidence=EU965933 (DDBJ);ORF_evidence=NP_001064045.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldo/keto reductase (IPR001395),Aldo/keto reductase subgroup (IPR020471),NADP-dependent oxidoreductase domain (IPR023210);TENOR=Os10t0113375-00
Chr10	irgsp1_rep	five_prime_UTR	882041	882194	.	+	.	Parent=Os10t0113375-00
Chr10	irgsp1_rep	CDS	882195	882406	.	+	0	Parent=Os10t0113375-00
Chr10	irgsp1_rep	CDS	883007	883238	.	+	1	Parent=Os10t0113375-00
Chr10	irgsp1_rep	mRNA	882041	883189	.	-	.	ID=Os10t0113549-00;Name=Os10t0113549-00;Locus_id=Os10g0113549;Note=Non-protein coding transcript.;Transcript_evidence=EU946224 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0113549-00
Chr10	irgsp1_rep	exon	883038	883189	.	-	.	Parent=Os10t0113549-00
Chr10	irgsp1_rep	exon	882041	882434	.	-	.	Parent=Os10t0113549-00
Chr10	irgsp1_rep	mRNA	905087	906476	.	+	.	ID=Os10t0113723-00;Name=Os10t0113723-00;Locus_id=Os10g0113723;Note=Similar to NAD(P)H-dependent oxidoreductase.;Transcript_evidence=AB269907 (DDBJ);ORF_evidence=NP_001148246.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldo/keto reductase (IPR001395),Aldo/keto reductase subgroup (IPR020471),NADP-dependent oxidoreductase domain (IPR023210);TENOR=Os10t0113723-00
Chr10	irgsp1_rep	CDS	905087	905170	.	+	0	Parent=Os10t0113723-00
Chr10	irgsp1_rep	CDS	905799	905972	.	+	0	Parent=Os10t0113723-00
Chr10	irgsp1_rep	CDS	906323	906370	.	+	0	Parent=Os10t0113723-00
Chr10	irgsp1_rep	three_prime_UTR	906371	906476	.	+	.	Parent=Os10t0113723-00
Chr10	irgsp1_rep	mRNA	911557	913060	.	+	.	ID=Os10t0113900-01;Name=Os10t0113900-01;Locus_id=Os10g0113900;Note=Similar to NAD(P)H-dependent oxidoreductase.;Transcript_evidence=AK107387 (DDBJ%2C Best hit);ORF_evidence=NP_001148246.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldo/keto reductase (IPR001395),Aldo/keto reductase%2C conserved site (IPR018170),NADP-dependent oxidoreductase domain (IPR023210);NIAS_FLcDNA=002-127-C08;Expression=AK107387;TENOR=Os10t0113900-01;KEGG=Os10t0113900-01 (EC:2.3.1.170)
Chr10	irgsp1_rep	five_prime_UTR	911557	911622	.	+	.	Parent=Os10t0113900-01
Chr10	irgsp1_rep	CDS	911623	911937	.	+	0	Parent=Os10t0113900-01
Chr10	irgsp1_rep	three_prime_UTR	911938	913060	.	+	.	Parent=Os10t0113900-01
Chr10	irgsp1_rep	mRNA	911575	916911	.	+	.	ID=Os10t0113900-02;Name=Os10t0113900-02;Locus_id=Os10g0113900;Note=Similar to NADPH-dependent codeinone reductase (EC 1.1.1.247).;Transcript_evidence=AK105090 (DDBJ%2C Best hit),AK068411 (DDBJ%2C Best hit);ORF_evidence=NP_001148246.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldo/keto reductase (IPR001395),Aldo/keto reductase%2C conserved site (IPR018170),Aldo/keto reductase subgroup (IPR020471),NADP-dependent oxidoreductase domain (IPR023210);NIAS_FLcDNA=001-047-B12,J013151D08;TENOR=Os10t0113900-02
Chr10	irgsp1_rep	five_prime_UTR	911575	911622	.	+	.	Parent=Os10t0113900-02
Chr10	irgsp1_rep	CDS	911623	911933	.	+	0	Parent=Os10t0113900-02
Chr10	irgsp1_rep	CDS	913138	913387	.	+	1	Parent=Os10t0113900-02
Chr10	irgsp1_rep	CDS	915948	916127	.	+	0	Parent=Os10t0113900-02
Chr10	irgsp1_rep	CDS	916410	916661	.	+	0	Parent=Os10t0113900-02
Chr10	irgsp1_rep	three_prime_UTR	916662	916911	.	+	.	Parent=Os10t0113900-02
Chr10	irgsp1_rep	mRNA	911599	913389	.	-	.	ID=Os10t0114101-00;Name=Os10t0114101-00;Locus_id=Os10g0114101;Note=Non-protein coding transcript.;Transcript_evidence=AK375890 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0114101-00
Chr10	irgsp1_rep	exon	913061	913389	.	-	.	Parent=Os10t0114101-00
Chr10	irgsp1_rep	exon	911599	911949	.	-	.	Parent=Os10t0114101-00
Chr10	irgsp1_rep	mRNA	923908	926465	.	+	.	ID=Os10t0114300-01;Name=Os10t0114300-01;Locus_id=Os10g0114300;Note=Similar to NADPH-dependent codeinone reductase (EC 1.1.1.247).;Transcript_evidence=AK063329 (DDBJ%2C Best hit);ORF_evidence=NP_001148246.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldo/keto reductase (IPR001395),Aldo/keto reductase%2C conserved site (IPR018170),Aldo/keto reductase subgroup (IPR020471),NADP-dependent oxidoreductase domain (IPR023210);NIAS_FLcDNA=001-113-H10;Expression=AK063329;TENOR=Os10t0114300-01;KEGG=Os10t0114300-01 (EC:1.1.1.247)
Chr10	irgsp1_rep	five_prime_UTR	923908	923990	.	+	.	Parent=Os10t0114300-01
Chr10	irgsp1_rep	CDS	923991	924346	.	+	0	Parent=Os10t0114300-01
Chr10	irgsp1_rep	CDS	925346	925592	.	+	1	Parent=Os10t0114300-01
Chr10	irgsp1_rep	CDS	925710	925889	.	+	0	Parent=Os10t0114300-01
Chr10	irgsp1_rep	CDS	926079	926324	.	+	0	Parent=Os10t0114300-01
Chr10	irgsp1_rep	three_prime_UTR	926325	926465	.	+	.	Parent=Os10t0114300-01
Chr10	irgsp1_rep	mRNA	926519	930299	.	-	.	ID=Os10t0114400-01;Name=Os10t0114400-01;Locus_id=Os10g0114400;Oryzabase Gene Symbol Synonym(s)=OsBRI1;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK243167 (DDBJ%2C Best hit);ORF_evidence=NP_001064047.2 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J100035D22;Oryzabase=21679;TENOR=Os10t0114400-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	930021	930299	.	-	.	Parent=Os10t0114400-01
Chr10	irgsp1_rep	CDS	926688	930020	.	-	0	Parent=Os10t0114400-01
Chr10	irgsp1_rep	three_prime_UTR	926519	926687	.	-	.	Parent=Os10t0114400-01
Chr10	irgsp1_rep	mRNA	939084	940863	.	-	.	ID=Os10t0114500-01;Name=Os10t0114500-01;Locus_id=Os10g0114500;Oryzabase Gene Symbol Synonym(s)=OsGBP2%2C GBP2;Oryzabase Gene Name Synonym(s)=barley B recombinant like protein A%2C GAGA-binding transcription factor 2;Note=Barley B recombinant like-protein B (Barley B recombinant like-protein A).;Transcript_evidence=AK063643 (DDBJ%2C Best hit);ORF_evidence=Q8GUC3 (UniProt);InterPro=GAGA binding-like (IPR010409);NIAS_FLcDNA=001-118-H02;Oryzabase=13971;Expression=AK063643;TENOR=Os10t0114500-01;KEGG=Os10t0114500-01
Chr10	irgsp1_rep	five_prime_UTR	940702	940863	.	-	.	Parent=Os10t0114500-01
Chr10	irgsp1_rep	five_prime_UTR	940402	940511	.	-	.	Parent=Os10t0114500-01
Chr10	irgsp1_rep	CDS	939376	940401	.	-	0	Parent=Os10t0114500-01
Chr10	irgsp1_rep	three_prime_UTR	939084	939375	.	-	.	Parent=Os10t0114500-01
Chr10	irgsp1_rep	mRNA	956079	997375	.	-	.	ID=Os10t0114850-00;Name=Os10t0114850-00;Locus_id=Os10g0114850;Note=Non-protein coding transcript.;Transcript_evidence=CT837943 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os10t0114850-00
Chr10	irgsp1_rep	exon	997236	997375	.	-	.	Parent=Os10t0114850-00
Chr10	irgsp1_rep	exon	995822	995933	.	-	.	Parent=Os10t0114850-00
Chr10	irgsp1_rep	exon	995243	995339	.	-	.	Parent=Os10t0114850-00
Chr10	irgsp1_rep	exon	991751	991921	.	-	.	Parent=Os10t0114850-00
Chr10	irgsp1_rep	exon	956079	956290	.	-	.	Parent=Os10t0114850-00
Chr10	irgsp1_rep	mRNA	976507	978286	.	-	.	ID=Os10t0115200-01;Name=Os10t0115200-01;Locus_id=Os10g0115200;Oryzabase Gene Symbol Synonym(s)=OsGBP3%2C GBP3;Oryzabase Gene Name Synonym(s)=barley B recombinant like protein B%2C GAGA-binding transcription factor 3;Note=Barley B recombinant like-protein B (Barley B recombinant like-protein A).;Transcript_evidence=AK063643 (DDBJ%2C Best hit);ORF_evidence=Q8GUC3 (UniProt);InterPro=GAGA binding-like (IPR010409);NIAS_FLcDNA=001-118-H02;Oryzabase=13972;Expression=AK063643;TENOR=Os10t0115200-01;KEGG=Os10t0115200-01
Chr10	irgsp1_rep	five_prime_UTR	978125	978286	.	-	.	Parent=Os10t0115200-01
Chr10	irgsp1_rep	five_prime_UTR	977825	977934	.	-	.	Parent=Os10t0115200-01
Chr10	irgsp1_rep	CDS	976799	977824	.	-	0	Parent=Os10t0115200-01
Chr10	irgsp1_rep	three_prime_UTR	976507	976798	.	-	.	Parent=Os10t0115200-01
Chr10	irgsp1_rep	mRNA	1000086	1002907	.	-	.	ID=Os10t0115500-00;Name=Os10t0115500-00;Locus_id=Os10g0115500;Oryzabase Gene Symbol Synonym(s)=OsBBR%2C BBR%2C OsGBP4%2C GBP4;Oryzabase Gene Name Synonym(s)=barlet b recombinant protein%2C rice BBR protein%2C GA octodinucleotide repeat binding factor BBR%2C barley B recombinant like protein C%2C GAGA-binding transcription factor 4;Note=Similar to Barley B recombinant like-protein B (Barley B recombinant like-protein A).;Transcript_evidence=AY570521 (DDBJ%2C Best hit);ORF_evidence=Q8GUC3 (UniProt);InterPro=GAGA binding-like (IPR010409);Oryzabase=13970;Expression=AY570521;TENOR=Os10t0115500-00;KEGG=Os10t0115500-00
Chr10	irgsp1_rep	five_prime_UTR	1002656	1002907	.	-	.	Parent=Os10t0115500-00
Chr10	irgsp1_rep	CDS	1002555	1002655	.	-	0	Parent=Os10t0115500-00
Chr10	irgsp1_rep	CDS	1001941	1001981	.	-	1	Parent=Os10t0115500-00
Chr10	irgsp1_rep	CDS	1001128	1001397	.	-	2	Parent=Os10t0115500-00
Chr10	irgsp1_rep	CDS	1000327	1000946	.	-	2	Parent=Os10t0115500-00
Chr10	irgsp1_rep	three_prime_UTR	1000086	1000326	.	-	.	Parent=Os10t0115500-00
Chr10	irgsp1_rep	mRNA	1005275	1005519	.	+	.	ID=Os10t0115550-00;Name=Os10t0115550-00;Locus_id=Os10g0115550;Note=Similar to gibberellin-regulated family protein.;Transcript_evidence=FP101404 (DDBJ);ORF_evidence=NP_180639.2 (RefSeq);InterPro=Gibberellin regulated protein (IPR003854);TENOR=Os10t0115550-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	1005275	1005490	.	+	0	Parent=Os10t0115550-00
Chr10	irgsp1_rep	three_prime_UTR	1005491	1005519	.	+	.	Parent=Os10t0115550-00
Chr10	irgsp1_rep	mRNA	1007665	1012918	.	-	.	ID=Os10t0115600-01;Name=Os10t0115600-01;Locus_id=Os10g0115600;Oryzabase Gene Symbol Synonym(s)=U1-70K;Oryzabase Gene Name Synonym(s)=U1 snRNP 70K%2C U1-snRNP-specific 70K protein%2C U1 small nuclear ribonucleoprotein 70K;Note=Hypothetical conserved gene.;Transcript_evidence=AK100686 (DDBJ%2C Best hit);ORF_evidence=Q2EIG9 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=Nucleotide-binding%2C alpha-beta plait (IPR012677),U1 small nuclear ribonucleoprotein of 70kDa MW N-terminal (IPR022023);NIAS_FLcDNA=J023113P16;Oryzabase=15767;Expression=AK100686;TENOR=Os10t0115600-01;KEGG=Os10t0115600-01
Chr10	irgsp1_rep	five_prime_UTR	1012823	1012918	.	-	.	Parent=Os10t0115600-01
Chr10	irgsp1_rep	CDS	1012721	1012822	.	-	0	Parent=Os10t0115600-01
Chr10	irgsp1_rep	CDS	1012506	1012620	.	-	0	Parent=Os10t0115600-01
Chr10	irgsp1_rep	CDS	1012266	1012345	.	-	2	Parent=Os10t0115600-01
Chr10	irgsp1_rep	CDS	1011477	1011552	.	-	0	Parent=Os10t0115600-01
Chr10	irgsp1_rep	CDS	1011331	1011395	.	-	2	Parent=Os10t0115600-01
Chr10	irgsp1_rep	CDS	1011007	1011231	.	-	0	Parent=Os10t0115600-01
Chr10	irgsp1_rep	three_prime_UTR	1009459	1011006	.	-	.	Parent=Os10t0115600-01
Chr10	irgsp1_rep	three_prime_UTR	1009193	1009355	.	-	.	Parent=Os10t0115600-01
Chr10	irgsp1_rep	three_prime_UTR	1008739	1008804	.	-	.	Parent=Os10t0115600-01
Chr10	irgsp1_rep	three_prime_UTR	1008069	1008663	.	-	.	Parent=Os10t0115600-01
Chr10	irgsp1_rep	three_prime_UTR	1007665	1007969	.	-	.	Parent=Os10t0115600-01
Chr10	irgsp1_rep	mRNA	1007665	1012906	.	-	.	ID=Os10t0115600-02;Name=Os10t0115600-02;Locus_id=Os10g0115600;Oryzabase Gene Symbol Synonym(s)=U1-70K;Oryzabase Gene Name Synonym(s)=U1 snRNP 70K%2C U1-snRNP-specific 70K protein%2C U1 small nuclear ribonucleoprotein 70K;Note=Similar to U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70 kDa) (snRNP70) (U1-70K). Splice isoform Short.;Transcript_evidence=AK059504 (DDBJ%2C Best hit),AK121007 (DDBJ%2C Best hit);ORF_evidence=Q2EIH1 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677),U1 small nuclear ribonucleoprotein of 70kDa MW N-terminal (IPR022023);NIAS_FLcDNA=001-029-A09,J023046L24;Oryzabase=15767;TENOR=Os10t0115600-02
Chr10	irgsp1_rep	five_prime_UTR	1012823	1012906	.	-	.	Parent=Os10t0115600-02
Chr10	irgsp1_rep	CDS	1012721	1012822	.	-	0	Parent=Os10t0115600-02
Chr10	irgsp1_rep	CDS	1012506	1012620	.	-	0	Parent=Os10t0115600-02
Chr10	irgsp1_rep	CDS	1012266	1012345	.	-	2	Parent=Os10t0115600-02
Chr10	irgsp1_rep	CDS	1011477	1011552	.	-	0	Parent=Os10t0115600-02
Chr10	irgsp1_rep	CDS	1011331	1011395	.	-	2	Parent=Os10t0115600-02
Chr10	irgsp1_rep	CDS	1011169	1011231	.	-	0	Parent=Os10t0115600-02
Chr10	irgsp1_rep	CDS	1009459	1009540	.	-	0	Parent=Os10t0115600-02
Chr10	irgsp1_rep	CDS	1009193	1009355	.	-	2	Parent=Os10t0115600-02
Chr10	irgsp1_rep	CDS	1008739	1008804	.	-	1	Parent=Os10t0115600-02
Chr10	irgsp1_rep	CDS	1008084	1008663	.	-	1	Parent=Os10t0115600-02
Chr10	irgsp1_rep	three_prime_UTR	1008069	1008083	.	-	.	Parent=Os10t0115600-02
Chr10	irgsp1_rep	three_prime_UTR	1007665	1007969	.	-	.	Parent=Os10t0115600-02
Chr10	irgsp1_rep	mRNA	1034806	1037595	.	-	.	ID=Os10t0116000-00;Name=Os10t0116000-00;Locus_id=Os10g0116000;Oryzabase Gene Symbol Synonym(s)=PPR;Oryzabase Gene Name Synonym(s)=Pentatricopeptide repeat (PPR) protein;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3C203 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);Oryzabase=22512;TENOR=Os10t0116000-00
Chr10	irgsp1_rep	CDS	1034806	1037595	.	-	0	Parent=Os10t0116000-00
Chr10	irgsp1_rep	mRNA	1049800	1056908	.	-	.	ID=Os10t0116200-00;Name=Os10t0116200-00;Locus_id=Os10g0116200;Note=Conserved hypothetical protein.;Transcript_evidence=AK356715 (DDBJ);ORF_evidence=B9G791 (UniProt);TENOR=Os10t0116200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	1056766	1056908	.	-	.	Parent=Os10t0116200-00
Chr10	irgsp1_rep	CDS	1056320	1056765	.	-	0	Parent=Os10t0116200-00
Chr10	irgsp1_rep	CDS	1049800	1050472	.	-	1	Parent=Os10t0116200-00
Chr10	irgsp1_rep	mRNA	1053261	1054241	.	+	.	ID=Os10t0116300-01;Name=Os10t0116300-01;Locus_id=Os10g0116300;Note=EF-HAND 2 domain containing protein.;Transcript_evidence=AK106211 (DDBJ%2C Best hit);ORF_evidence=NP_001175905.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249);NIAS_FLcDNA=001-208-G08;Expression=AK106211;TENOR=Os10t0116300-01;KEGG=Os10t0116300-01
Chr10	irgsp1_rep	five_prime_UTR	1053261	1053644	.	+	.	Parent=Os10t0116300-01
Chr10	irgsp1_rep	CDS	1053645	1053950	.	+	0	Parent=Os10t0116300-01
Chr10	irgsp1_rep	three_prime_UTR	1053951	1054241	.	+	.	Parent=Os10t0116300-01
Chr10	irgsp1_rep	mRNA	1054371	1056101	.	-	.	ID=Os10t0116400-01;Name=Os10t0116400-01;Locus_id=Os10g0116400;Note=Hypothetical conserved gene.;Transcript_evidence=AK241232 (DDBJ%2C Best hit);ORF_evidence=B7END2 (UniProt);NIAS_FLcDNA=J065127K22;TENOR=Os10t0116400-01;KEGG=Os10t0116400-01
Chr10	irgsp1_rep	five_prime_UTR	1056101	1056101	.	-	.	Parent=Os10t0116400-01
Chr10	irgsp1_rep	CDS	1055579	1056100	.	-	0	Parent=Os10t0116400-01
Chr10	irgsp1_rep	three_prime_UTR	1055158	1055578	.	-	.	Parent=Os10t0116400-01
Chr10	irgsp1_rep	three_prime_UTR	1054371	1055082	.	-	.	Parent=Os10t0116400-01
Chr10	irgsp1_rep	mRNA	1067078	1068007	.	-	.	ID=Os10t0116600-00;Name=Os10t0116600-00;Locus_id=Os10g0116600;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XH75 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os10t0116600-00;KEGG=Os10t0116600-00
Chr10	irgsp1_rep	CDS	1067078	1068007	.	-	0	Parent=Os10t0116600-00
Chr10	irgsp1_rep	mRNA	1067115	1070159	.	+	.	ID=Os10t0116650-00;Name=Os10t0116650-00;Locus_id=Os10g0116650;Note=Hypothetical protein.;Transcript_evidence=tplb0029l08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0116650-00
Chr10	irgsp1_rep	five_prime_UTR	1067115	1068047	.	+	.	Parent=Os10t0116650-00
Chr10	irgsp1_rep	five_prime_UTR	1068943	1069149	.	+	.	Parent=Os10t0116650-00
Chr10	irgsp1_rep	CDS	1069150	1069172	.	+	0	Parent=Os10t0116650-00
Chr10	irgsp1_rep	CDS	1069273	1070159	.	+	1	Parent=Os10t0116650-00
Chr10	irgsp1_rep	mRNA	1068933	1070239	.	-	.	ID=Os10t0116701-00;Name=Os10t0116701-00;Locus_id=Os10g0116701;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XH75 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515);InterPro=EGF-type aspartate/asparagine hydroxylation site (IPR000152),Epidermal growth factor-like%2C type 3 (IPR000742),EGF-like calcium-binding (IPR001881),Epidermal growth factor-like (IPR006210),EGF-like calcium-binding%2C conserved site (IPR018097);TENOR=Os10t0116701-00;KEGG=Os10t0116701-00
Chr10	irgsp1_rep	CDS	1069258	1070239	.	-	0	Parent=Os10t0116701-00
Chr10	irgsp1_rep	CDS	1068933	1069153	.	-	2	Parent=Os10t0116701-00
Chr10	irgsp1_rep	mRNA	1082947	1084984	.	+	.	ID=Os10t0116800-01;Name=Os10t0116800-01;Locus_id=Os10g0116800;CGSNL Gene Symbol=PAP3B;CGSNL Gene Name=PURPLE ACID PHOSPHATASE 3B;Oryzabase Gene Symbol Synonym(s)=OsPAP3b;Oryzabase Gene Name Synonym(s)=purple acid phosphatase 3b;Note=Similar to Purple acid phosphatase.;Transcript_evidence=AK110804 (DDBJ%2C Best hit);ORF_evidence=B6TWW2 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Metallophosphoesterase domain (IPR004843);NIAS_FLcDNA=002-171-E10;Oryzabase=11377;Expression=AK110804;TENOR=Os10t0116800-01;KEGG=Os10t0116800-01
Chr10	irgsp1_rep	five_prime_UTR	1082947	1082953	.	+	.	Parent=Os10t0116800-01
Chr10	irgsp1_rep	CDS	1082954	1083133	.	+	0	Parent=Os10t0116800-01
Chr10	irgsp1_rep	CDS	1083275	1083431	.	+	0	Parent=Os10t0116800-01
Chr10	irgsp1_rep	CDS	1083704	1083811	.	+	2	Parent=Os10t0116800-01
Chr10	irgsp1_rep	CDS	1083978	1084105	.	+	2	Parent=Os10t0116800-01
Chr10	irgsp1_rep	CDS	1084205	1084333	.	+	0	Parent=Os10t0116800-01
Chr10	irgsp1_rep	CDS	1084420	1084487	.	+	0	Parent=Os10t0116800-01
Chr10	irgsp1_rep	CDS	1084567	1084804	.	+	1	Parent=Os10t0116800-01
Chr10	irgsp1_rep	three_prime_UTR	1084805	1084984	.	+	.	Parent=Os10t0116800-01
Chr10	irgsp1_rep	mRNA	1085238	1089511	.	-	.	ID=Os10t0116900-01;Name=Os10t0116900-01;Locus_id=Os10g0116900;Note=Conserved hypothetical protein.;Transcript_evidence=AK121038 (DDBJ%2C Best hit);ORF_evidence=Q8W5L8 (UniProt);NIAS_FLcDNA=J023051E10;Expression=AK121038;TENOR=Os10t0116900-01;KEGG=Os10t0116900-01
Chr10	irgsp1_rep	five_prime_UTR	1089448	1089511	.	-	.	Parent=Os10t0116900-01
Chr10	irgsp1_rep	CDS	1089054	1089447	.	-	0	Parent=Os10t0116900-01
Chr10	irgsp1_rep	CDS	1088587	1088682	.	-	2	Parent=Os10t0116900-01
Chr10	irgsp1_rep	CDS	1087988	1088061	.	-	2	Parent=Os10t0116900-01
Chr10	irgsp1_rep	CDS	1087765	1087882	.	-	0	Parent=Os10t0116900-01
Chr10	irgsp1_rep	CDS	1087230	1087337	.	-	2	Parent=Os10t0116900-01
Chr10	irgsp1_rep	CDS	1087021	1087133	.	-	2	Parent=Os10t0116900-01
Chr10	irgsp1_rep	CDS	1086788	1086942	.	-	0	Parent=Os10t0116900-01
Chr10	irgsp1_rep	CDS	1085642	1086371	.	-	1	Parent=Os10t0116900-01
Chr10	irgsp1_rep	three_prime_UTR	1085238	1085641	.	-	.	Parent=Os10t0116900-01
Chr10	irgsp1_rep	mRNA	1085228	1088637	.	-	.	ID=Os10t0116900-02;Name=Os10t0116900-02;Locus_id=Os10g0116900;Note=Hypothetical conserved gene.;Transcript_evidence=AK060266 (DDBJ%2C Best hit);ORF_evidence=Q8W5L8 (UniProt);NIAS_FLcDNA=001-005-C12;Expression=AK060266;TENOR=Os10t0116900-02;KEGG=Os10t0116900-02
Chr10	irgsp1_rep	five_prime_UTR	1088636	1088637	.	-	.	Parent=Os10t0116900-02
Chr10	irgsp1_rep	CDS	1088587	1088635	.	-	0	Parent=Os10t0116900-02
Chr10	irgsp1_rep	CDS	1087988	1088061	.	-	2	Parent=Os10t0116900-02
Chr10	irgsp1_rep	CDS	1087765	1087882	.	-	0	Parent=Os10t0116900-02
Chr10	irgsp1_rep	CDS	1087230	1087337	.	-	2	Parent=Os10t0116900-02
Chr10	irgsp1_rep	CDS	1087021	1087133	.	-	2	Parent=Os10t0116900-02
Chr10	irgsp1_rep	CDS	1086788	1086942	.	-	0	Parent=Os10t0116900-02
Chr10	irgsp1_rep	CDS	1085642	1086371	.	-	1	Parent=Os10t0116900-02
Chr10	irgsp1_rep	three_prime_UTR	1085228	1085641	.	-	.	Parent=Os10t0116900-02
Chr10	irgsp1_rep	mRNA	1092968	1096873	.	-	.	ID=Os10t0117000-01;Name=Os10t0117000-01;Locus_id=Os10g0117000;CGSNL Gene Symbol=XTH27;CGSNL Gene Name=XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 27;Oryzabase Gene Symbol Synonym(s)=OsXTH27%2C XTH;Oryzabase Gene Name Synonym(s)=xyloglucan endotransglucosylase/hydrolase%2C xyloglucan endotransglucosylase 27;Note=Similar to predicted protein.;Transcript_evidence=AK243003 (DDBJ%2C Best hit);ORF_evidence=Q7XH71 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 16 (IPR000757),Concanavalin A-like lectin/glucanase (IPR008985),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320);NIAS_FLcDNA=J090096F15;Oryzabase=6508;TENOR=Os10t0117000-01;KEGG=Os10t0117000-01 (EC:2.4.1.207)
Chr10	irgsp1_rep	five_prime_UTR	1096799	1096873	.	-	.	Parent=Os10t0117000-01
Chr10	irgsp1_rep	CDS	1096573	1096798	.	-	0	Parent=Os10t0117000-01
Chr10	irgsp1_rep	CDS	1096293	1096471	.	-	2	Parent=Os10t0117000-01
Chr10	irgsp1_rep	three_prime_UTR	1092968	1096292	.	-	.	Parent=Os10t0117000-01
Chr10	irgsp1_rep	mRNA	1115152	1115715	.	+	.	ID=Os10t0117400-00;Name=Os10t0117400-00;Locus_id=Os10g0117400;Note=Hypothetical conserved gene.;Transcript_evidence=EU975848 (DDBJ);ORF_evidence=E5FNA3 (UniProt);TENOR=Os10t0117400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	1115152	1115715	.	+	0	Parent=Os10t0117400-00
Chr10	irgsp1_rep	mRNA	1126728	1130383	.	+	.	ID=Os10t0117800-01;Name=Os10t0117800-01;Locus_id=Os10g0117800;CGSNL Gene Symbol=PXLG4;CGSNL Gene Name=PUTATIVE EXTRA-LARGE G PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OsPXLG4;Oryzabase Gene Name Synonym(s)=putative extra-large G protein 4;Note=Guanine nucleotide binding protein (G-protein)%2C alpha subunit family protein.;Transcript_evidence=AK108670 (DDBJ%2C Best hit);ORF_evidence=NP_174475.1 (RefSeq);GO=Biological Process: signal transduction (GO:0007165),Biological Process: G-protein coupled receptor protein signaling pathway (GO:0007186),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: guanyl nucleotide binding (GO:0019001);InterPro=Guanine nucleotide binding protein (G-protein)%2C alpha subunit (IPR001019),G protein alpha subunit%2C helical insertion (IPR011025);NIAS_FLcDNA=002-148-H04;Oryzabase=23518;Expression=AK108670;TENOR=Os10t0117800-01;KEGG=Os10t0117800-01
Chr10	irgsp1_rep	five_prime_UTR	1126728	1126728	.	+	.	Parent=Os10t0117800-01
Chr10	irgsp1_rep	CDS	1126729	1126884	.	+	0	Parent=Os10t0117800-01
Chr10	irgsp1_rep	CDS	1127395	1127569	.	+	0	Parent=Os10t0117800-01
Chr10	irgsp1_rep	CDS	1128146	1128390	.	+	2	Parent=Os10t0117800-01
Chr10	irgsp1_rep	CDS	1129214	1129383	.	+	0	Parent=Os10t0117800-01
Chr10	irgsp1_rep	CDS	1129500	1130076	.	+	1	Parent=Os10t0117800-01
Chr10	irgsp1_rep	three_prime_UTR	1130077	1130383	.	+	.	Parent=Os10t0117800-01
Chr10	irgsp1_rep	mRNA	1127746	1131484	.	+	.	ID=Os10t0117800-02;Name=Os10t0117800-02;Locus_id=Os10g0117800;CGSNL Gene Symbol=PXLG4;CGSNL Gene Name=PUTATIVE EXTRA-LARGE G PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OsPXLG4;Oryzabase Gene Name Synonym(s)=putative extra-large G protein 4;Note=Similar to cDNA clone:002-148-H04%2C full insert sequence.;Transcript_evidence=AK119385 (DDBJ%2C Best hit);ORF_evidence=XP_002890957.1 (RefSeq);GO=Biological Process: signal transduction (GO:0007165),Biological Process: G-protein coupled receptor protein signaling pathway (GO:0007186),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: guanyl nucleotide binding (GO:0019001);InterPro=Guanine nucleotide binding protein (G-protein)%2C alpha subunit (IPR001019),G protein alpha subunit%2C helical insertion (IPR011025);NIAS_FLcDNA=001-132-B11;Oryzabase=23518;Expression=AK119385;TENOR=Os10t0117800-02;KEGG=Os10t0117800-02
Chr10	irgsp1_rep	five_prime_UTR	1127746	1128108	.	+	.	Parent=Os10t0117800-02
Chr10	irgsp1_rep	CDS	1128109	1128390	.	+	0	Parent=Os10t0117800-02
Chr10	irgsp1_rep	CDS	1129214	1129383	.	+	0	Parent=Os10t0117800-02
Chr10	irgsp1_rep	CDS	1129500	1130076	.	+	1	Parent=Os10t0117800-02
Chr10	irgsp1_rep	three_prime_UTR	1130077	1131484	.	+	.	Parent=Os10t0117800-02
Chr10	irgsp1_rep	mRNA	1139929	1141433	.	-	.	ID=Os10t0118000-01;Name=Os10t0118000-01;Locus_id=Os10g0118000;Note=Similar to 5-pentadecatrienyl resorcinol O-methyltransferase.;Transcript_evidence=AK069721 (DDBJ%2C Best hit);ORF_evidence=A8QW53 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Plant methyltransferase dimerisation (IPR012967);NIAS_FLcDNA=J023028O22;TENOR=Os10t0118000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	1141405	1141433	.	-	.	Parent=Os10t0118000-01
Chr10	irgsp1_rep	CDS	1141119	1141404	.	-	0	Parent=Os10t0118000-01
Chr10	irgsp1_rep	CDS	1140951	1140991	.	-	2	Parent=Os10t0118000-01
Chr10	irgsp1_rep	three_prime_UTR	1140604	1140950	.	-	.	Parent=Os10t0118000-01
Chr10	irgsp1_rep	three_prime_UTR	1139929	1140494	.	-	.	Parent=Os10t0118000-01
Chr10	irgsp1_rep	mRNA	1160415	1163436	.	+	.	ID=Os10t0118100-01;Name=Os10t0118100-01;Locus_id=Os10g0118100;Note=Conserved hypothetical protein.;Transcript_evidence=AK288579 (DDBJ%2C Best hit);ORF_evidence=NP_001068307.2 (RefSeq);NIAS_FLcDNA=J090049H02;TENOR=Os10t0118100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	1160415	1160490	.	+	.	Parent=Os10t0118100-01
Chr10	irgsp1_rep	CDS	1160491	1160751	.	+	0	Parent=Os10t0118100-01
Chr10	irgsp1_rep	three_prime_UTR	1160752	1163436	.	+	.	Parent=Os10t0118100-01
Chr10	irgsp1_rep	mRNA	1162917	1164483	.	-	.	ID=Os10t0118200-01;Name=Os10t0118200-01;Locus_id=Os10g0118200;Oryzabase Gene Symbol Synonym(s)=ZRP4%2C OsASMT2%2C ASMT2;Oryzabase Gene Name Synonym(s)=O-methyltransferase ZRP4%2C N-acetylserotonin methyltransferase 2;Note=Conserved hypothetical protein.;Transcript_evidence=AK069308 (DDBJ%2C Best hit);ORF_evidence=A3C219 (UniProt);NIAS_FLcDNA=J023012K03;Oryzabase=20480;TENOR=Os10t0118200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	1164309	1164483	.	-	.	Parent=Os10t0118200-01
Chr10	irgsp1_rep	CDS	1164069	1164308	.	-	0	Parent=Os10t0118200-01
Chr10	irgsp1_rep	three_prime_UTR	1163650	1164068	.	-	.	Parent=Os10t0118200-01
Chr10	irgsp1_rep	three_prime_UTR	1162917	1163562	.	-	.	Parent=Os10t0118200-01
Chr10	irgsp1_rep	mRNA	1189829	1190703	.	-	.	ID=Os10t0118800-00;Name=Os10t0118800-00;Locus_id=Os10g0118800;Note=Hypothetical conserved gene.;Transcript_evidence=CT835748 (DDBJ%2C Best hit);ORF_evidence=NP_001064060.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=CytoChrome b561%2C eukaryote (IPR004877),CytoChrome b561/ferric reductase transmembrane (IPR006593);TENOR=Os10t0118800-00;KEGG=Os10t0118800-00
Chr10	irgsp1_rep	five_prime_UTR	1190703	1190703	.	-	.	Parent=Os10t0118800-00
Chr10	irgsp1_rep	CDS	1190514	1190702	.	-	0	Parent=Os10t0118800-00
Chr10	irgsp1_rep	CDS	1189977	1190234	.	-	0	Parent=Os10t0118800-00
Chr10	irgsp1_rep	three_prime_UTR	1189829	1189976	.	-	.	Parent=Os10t0118800-00
Chr10	irgsp1_rep	mRNA	1193347	1194794	.	-	.	ID=Os10t0118900-01;Name=Os10t0118900-01;Locus_id=Os10g0118900;Note=Similar to tRNA-splicing endonuclease positive effector-related.;Transcript_evidence=AK058386 (DDBJ%2C Best hit);ORF_evidence=NP_194739.1 (RefSeq);NIAS_FLcDNA=001-014-H12;Expression=AK058386;TENOR=Os10t0118900-01;KEGG=Os10t0118900-01
Chr10	irgsp1_rep	five_prime_UTR	1194793	1194794	.	-	.	Parent=Os10t0118900-01
Chr10	irgsp1_rep	CDS	1194469	1194792	.	-	0	Parent=Os10t0118900-01
Chr10	irgsp1_rep	CDS	1194241	1194372	.	-	0	Parent=Os10t0118900-01
Chr10	irgsp1_rep	CDS	1193983	1194114	.	-	0	Parent=Os10t0118900-01
Chr10	irgsp1_rep	three_prime_UTR	1193347	1193982	.	-	.	Parent=Os10t0118900-01
Chr10	irgsp1_rep	mRNA	1193349	1194538	.	-	.	ID=Os10t0118900-02;Name=Os10t0118900-02;Locus_id=Os10g0118900;Note=Similar to predicted protein.;Transcript_evidence=AK070076 (DDBJ%2C Best hit);ORF_evidence=NP_194739.1 (RefSeq);NIAS_FLcDNA=J023044N24;Expression=AK070076;TENOR=Os10t0118900-02;KEGG=Os10t0118900-02
Chr10	irgsp1_rep	five_prime_UTR	1194538	1194538	.	-	.	Parent=Os10t0118900-02
Chr10	irgsp1_rep	CDS	1194469	1194537	.	-	0	Parent=Os10t0118900-02
Chr10	irgsp1_rep	CDS	1193983	1194372	.	-	0	Parent=Os10t0118900-02
Chr10	irgsp1_rep	three_prime_UTR	1193349	1193982	.	-	.	Parent=Os10t0118900-02
Chr10	irgsp1_rep	mRNA	1215204	1215803	.	+	.	ID=Os10t0119100-01;Name=Os10t0119100-01;Locus_id=Os10g0119100;Note=Hypothetical conserved gene.;Transcript_evidence=AK108086 (DDBJ%2C Best hit);ORF_evidence=B9G7A2 (UniProt);NIAS_FLcDNA=002-138-H08;Expression=AK108086;TENOR=Os10t0119100-01;KEGG=Os10t0119100-01
Chr10	irgsp1_rep	CDS	1215204	1215356	.	+	0	Parent=Os10t0119100-01
Chr10	irgsp1_rep	three_prime_UTR	1215357	1215803	.	+	.	Parent=Os10t0119100-01
Chr10	irgsp1_rep	mRNA	1223357	1227190	.	-	.	ID=Os10t0119200-01;Name=Os10t0119200-01;Locus_id=Os10g0119200;RAP-DB Gene Symbol Synonym(s)=OsLRR-RLK2;RAP-DB Gene Name Synonym(s)=leucine-rich repeat receptor-like kinase 2;CGSNL Gene Symbol=LRR-RLK2;CGSNL Gene Name=LEUCINE-RICH REPEAT RECEPTOR-LIKE KINASE 2;Oryzabase Gene Symbol Synonym(s)=OsLRR-RLK2;Oryzabase Gene Name Synonym(s)=leucine-rich repeat receptor-like kinase 2;Note=Leucine-rich repeat receptor-like kinase%2C Promotion of the susceptibility of rice to brown planthopper (BPH);Transcript_evidence=XM_015757324;ORF_evidence=XP_015612810;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=Leucine-rich repeat domain superfamily (IPR032675),Protein kinase-like domain superfamily (IPR011009),Leucine-rich repeat-containing N-terminal%2C plant-type (IPR013210),Protein kinase domain (IPR000719),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat (IPR001611),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C active site (IPR008266);Manual Curation=June 30%2C 2020;Literature_PMID=32598036;Oryzabase=23732
Chr10	irgsp1_rep	five_prime_UTR	1227116	1227190	.	-	.	Parent=Os10t0119200-01
Chr10	irgsp1_rep	CDS	1224088	1227115	.	-	0	Parent=Os10t0119200-01
Chr10	irgsp1_rep	CDS	1223659	1224014	.	-	2	Parent=Os10t0119200-01
Chr10	irgsp1_rep	three_prime_UTR	1223357	1223658	.	-	.	Parent=Os10t0119200-01
Chr10	irgsp1_rep	mRNA	1234067	1241670	.	+	.	ID=Os10t0119300-01;Name=Os10t0119300-01;Locus_id=Os10g0119300;Oryzabase Gene Symbol Synonym(s)=OsFH3%2C FH3;Oryzabase Gene Name Synonym(s)=formin homology 3%2C forming family protein 3%2C FH2 protein 3%2C FH2 domain protein 3;Note=Actin-binding FH2 domain containing protein.;Transcript_evidence=AK063350 (DDBJ%2C Best hit);ORF_evidence=Q7G6K7 (UniProt);GO=Biological Process: cellular component organization (GO:0016043),Biological Process: actin cytoskeleton organization (GO:0030036),Molecular Function: actin binding (GO:0003779);InterPro=Actin-binding FH2/DRF autoregulatory (IPR003104),Actin-binding FH2 (IPR015425);NIAS_FLcDNA=001-114-B12;Oryzabase=21775;Expression=AK063350;TENOR=Os10t0119300-01;KEGG=Os10t0119300-01
Chr10	irgsp1_rep	five_prime_UTR	1234067	1234067	.	+	.	Parent=Os10t0119300-01
Chr10	irgsp1_rep	CDS	1234068	1234210	.	+	0	Parent=Os10t0119300-01
Chr10	irgsp1_rep	CDS	1234614	1234737	.	+	1	Parent=Os10t0119300-01
Chr10	irgsp1_rep	CDS	1235198	1235269	.	+	0	Parent=Os10t0119300-01
Chr10	irgsp1_rep	CDS	1236471	1236569	.	+	0	Parent=Os10t0119300-01
Chr10	irgsp1_rep	CDS	1236695	1236736	.	+	0	Parent=Os10t0119300-01
Chr10	irgsp1_rep	CDS	1236806	1236886	.	+	0	Parent=Os10t0119300-01
Chr10	irgsp1_rep	CDS	1236974	1237024	.	+	0	Parent=Os10t0119300-01
Chr10	irgsp1_rep	CDS	1237106	1237187	.	+	0	Parent=Os10t0119300-01
Chr10	irgsp1_rep	CDS	1237262	1237356	.	+	2	Parent=Os10t0119300-01
Chr10	irgsp1_rep	CDS	1239490	1239561	.	+	0	Parent=Os10t0119300-01
Chr10	irgsp1_rep	CDS	1239667	1239783	.	+	0	Parent=Os10t0119300-01
Chr10	irgsp1_rep	CDS	1240370	1240438	.	+	0	Parent=Os10t0119300-01
Chr10	irgsp1_rep	CDS	1240512	1240578	.	+	0	Parent=Os10t0119300-01
Chr10	irgsp1_rep	CDS	1240877	1241016	.	+	2	Parent=Os10t0119300-01
Chr10	irgsp1_rep	three_prime_UTR	1241017	1241191	.	+	.	Parent=Os10t0119300-01
Chr10	irgsp1_rep	three_prime_UTR	1241399	1241670	.	+	.	Parent=Os10t0119300-01
Chr10	irgsp1_rep	mRNA	1308447	1310945	.	+	.	ID=Os10t0120300-01;Name=Os10t0120300-01;Locus_id=Os10g0120300;Note=Similar to Leucine Rich Repeat family protein%2C expressed.;Transcript_evidence=AK073088 (DDBJ%2C Best hit);ORF_evidence=Q8S5D5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J033022N21;TENOR=Os10t0120300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	1308447	1310915	.	+	0	Parent=Os10t0120300-01
Chr10	irgsp1_rep	three_prime_UTR	1310916	1310945	.	+	.	Parent=Os10t0120300-01
Chr10	irgsp1_rep	mRNA	1355357	1356458	.	+	.	ID=Os10t0121300-00;Name=Os10t0121300-00;Locus_id=Os10g0121300;Note=Hypothetical conserved gene.;Transcript_evidence=BT062221 (DDBJ);ORF_evidence=Q8RU77 (UniProt);TENOR=Os10t0121300-00;KEGG=Os10t0121300-00
Chr10	irgsp1_rep	CDS	1355357	1355947	.	+	0	Parent=Os10t0121300-00
Chr10	irgsp1_rep	three_prime_UTR	1355948	1356082	.	+	.	Parent=Os10t0121300-00
Chr10	irgsp1_rep	three_prime_UTR	1356173	1356458	.	+	.	Parent=Os10t0121300-00
Chr10	irgsp1_rep	mRNA	1405692	1407206	.	+	.	ID=Os10t0122000-00;Name=Os10t0122000-00;Locus_id=Os10g0122000;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=EU967567 (DDBJ);ORF_evidence=NP_001150595.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os10t0122000-00;KEGG=Os10t0122000-00
Chr10	irgsp1_rep	five_prime_UTR	1405692	1405727	.	+	.	Parent=Os10t0122000-00
Chr10	irgsp1_rep	CDS	1405728	1407206	.	+	0	Parent=Os10t0122000-00
Chr10	irgsp1_rep	mRNA	1412002	1412362	.	-	.	ID=Os10t0122100-00;Name=Os10t0122100-00;Locus_id=Os10g0122100;Note=Hypothetical protein.;Transcript_evidence=AK372466 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0122100-00
Chr10	irgsp1_rep	CDS	1412002	1412362	.	-	0	Parent=Os10t0122100-00
Chr10	irgsp1_rep	mRNA	1431097	1432420	.	-	.	ID=Os10t0122200-00;Name=Os10t0122200-00;Locus_id=Os10g0122200;Note=Hypothetical protein.;Transcript_evidence=tplb0030e16 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0122200-00
Chr10	irgsp1_rep	five_prime_UTR	1432417	1432420	.	-	.	Parent=Os10t0122200-00
Chr10	irgsp1_rep	CDS	1431694	1432416	.	-	0	Parent=Os10t0122200-00
Chr10	irgsp1_rep	three_prime_UTR	1431097	1431693	.	-	.	Parent=Os10t0122200-00
Chr10	irgsp1_rep	mRNA	1431142	1432407	.	+	.	ID=Os10t0122300-00;Name=Os10t0122300-00;Locus_id=Os10g0122300;CGSNL Gene Symbol=AT17;CGSNL Gene Name=ACYLTRANSFERASE 17;Oryzabase Gene Symbol Synonym(s)=OsAT17%2C OsAt17;Oryzabase Gene Name Synonym(s)=acyltransferase 17;Note=Transferase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8S7R5 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);Oryzabase=11749;TENOR=Os10t0122300-00
Chr10	irgsp1_rep	CDS	1431142	1432407	.	+	0	Parent=Os10t0122300-00
Chr10	irgsp1_rep	mRNA	1444042	1445372	.	-	.	ID=Os10t0122400-00;Name=Os10t0122400-00;Locus_id=Os10g0122400;Note=Hypothetical protein.;Transcript_evidence=tplb0041e20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0122400-00
Chr10	irgsp1_rep	five_prime_UTR	1445275	1445372	.	-	.	Parent=Os10t0122400-00
Chr10	irgsp1_rep	CDS	1444639	1445274	.	-	0	Parent=Os10t0122400-00
Chr10	irgsp1_rep	three_prime_UTR	1444042	1444638	.	-	.	Parent=Os10t0122400-00
Chr10	irgsp1_rep	mRNA	1444042	1445310	.	+	.	ID=Os10t0122500-00;Name=Os10t0122500-00;Locus_id=Os10g0122500;CGSNL Gene Symbol=AT18;CGSNL Gene Name=ACYLTRANSFERASE 18;Oryzabase Gene Symbol Synonym(s)=OsAT18%2C OsAt18;Oryzabase Gene Name Synonym(s)=acyltransferase 18;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001064067.2 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);Oryzabase=11750;TENOR=Os10t0122500-00;KEGG=Os10t0122500-00
Chr10	irgsp1_rep	CDS	1444042	1445310	.	+	0	Parent=Os10t0122500-00
Chr10	irgsp1_rep	mRNA	1447351	1451372	.	-	.	ID=Os10t0122600-01;Name=Os10t0122600-01;Locus_id=Os10g0122600;RAP-DB Gene Symbol Synonym(s)=OsSNDP1;RAP-DB Gene Name Synonym(s)=Sec14-nodulin domain-containing protein 1;Oryzabase Gene Symbol Synonym(s)=OsSNDP1%2C SNDP1;Oryzabase Gene Name Synonym(s)=Sec14-nodulin domain-containing protein 1%2C Sec14-nodulin domain protein 1;Note=Sec14 and nodulin domain-containing protein%2C Root hair elongation;Transcript_evidence=NM_001070603.2;ORF_evidence=Q0IZ83;GO=Biological Process: transport (GO:0006810),Molecular Function: transporter activity (GO:0005215),Cellular Component: intracellular (GO:0005622);InterPro=Cellular retinaldehyde binding/alpha-tocopherol transport (IPR001071),CRAL/TRIO%2C N-terminal domain (IPR011074),CRAL-TRIO lipid binding domain (IPR001251);Manual Curation=October 5%2C 2015;Literature_PMID=23456248;Oryzabase=12285;TENOR=Os10t0122600-00
Chr10	irgsp1_rep	five_prime_UTR	1451349	1451372	.	-	.	Parent=Os10t0122600-01
Chr10	irgsp1_rep	CDS	1451303	1451348	.	-	0	Parent=Os10t0122600-01
Chr10	irgsp1_rep	CDS	1450748	1451030	.	-	2	Parent=Os10t0122600-01
Chr10	irgsp1_rep	CDS	1450564	1450663	.	-	1	Parent=Os10t0122600-01
Chr10	irgsp1_rep	CDS	1450180	1450446	.	-	0	Parent=Os10t0122600-01
Chr10	irgsp1_rep	CDS	1450020	1450097	.	-	0	Parent=Os10t0122600-01
Chr10	irgsp1_rep	CDS	1449824	1449925	.	-	0	Parent=Os10t0122600-01
Chr10	irgsp1_rep	CDS	1449688	1449737	.	-	0	Parent=Os10t0122600-01
Chr10	irgsp1_rep	CDS	1449511	1449604	.	-	1	Parent=Os10t0122600-01
Chr10	irgsp1_rep	CDS	1449310	1449411	.	-	0	Parent=Os10t0122600-01
Chr10	irgsp1_rep	CDS	1449082	1449198	.	-	0	Parent=Os10t0122600-01
Chr10	irgsp1_rep	CDS	1448542	1448647	.	-	0	Parent=Os10t0122600-01
Chr10	irgsp1_rep	CDS	1448097	1448455	.	-	2	Parent=Os10t0122600-01
Chr10	irgsp1_rep	CDS	1447829	1447903	.	-	0	Parent=Os10t0122600-01
Chr10	irgsp1_rep	CDS	1447564	1447581	.	-	0	Parent=Os10t0122600-01
Chr10	irgsp1_rep	three_prime_UTR	1447351	1447563	.	-	.	Parent=Os10t0122600-01
Chr10	irgsp1_rep	mRNA	1458084	1459409	.	+	.	ID=Os10t0122701-01;Name=Os10t0122701-01;Locus_id=Os10g0122701;Note=Non-protein coding transcript.;Transcript_evidence=AK242013 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J075108H15;TENOR=Os10t0122701-01
Chr10	irgsp1_rep	exon	1458084	1459409	.	+	.	Parent=Os10t0122701-01
Chr10	irgsp1_rep	mRNA	1479530	1481991	.	+	.	ID=Os10t0123200-01;Name=Os10t0123200-01;Locus_id=Os10g0123200;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK107098 (DDBJ%2C Best hit);ORF_evidence=A2Z4M5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-121-H10;Expression=AK107098;TENOR=Os10t0123200-01;KEGG=Os10t0123200-01
Chr10	irgsp1_rep	five_prime_UTR	1479530	1479639	.	+	.	Parent=Os10t0123200-01
Chr10	irgsp1_rep	CDS	1479640	1480152	.	+	0	Parent=Os10t0123200-01
Chr10	irgsp1_rep	three_prime_UTR	1480153	1480690	.	+	.	Parent=Os10t0123200-01
Chr10	irgsp1_rep	three_prime_UTR	1481467	1481991	.	+	.	Parent=Os10t0123200-01
Chr10	irgsp1_rep	mRNA	1498638	1498722	.	+	.	ID=Os10t0123350-00;Name=Os10t0123350-00;Locus_id=Os10g0123350;Note=Non-protein coding transcript.;Transcript_evidence=BT087033 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0123350-00
Chr10	irgsp1_rep	exon	1498638	1498722	.	+	.	Parent=Os10t0123350-00
Chr10	irgsp1_rep	mRNA	1525512	1526367	.	-	.	ID=Os10t0123900-00;Name=Os10t0123900-00;Locus_id=Os10g0123900;Oryzabase Gene Symbol Synonym(s)=OsCAF1-14%2C OsCAF1F;Oryzabase Gene Name Synonym(s)=CCR4-associated factor 1-14%2C carbon catabolite repressor 4-associated factor 1-14%2C CCR4-associated factor 1F%2C carbon catabolite repressor 4-associated factor 1F;Note=Similar to CAF1 family ribonuclease containing protein.;Transcript_evidence=tplb0006o10 (Wheat FLcDNA);ORF_evidence=Q7G609 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676);InterPro=Ribonuclease CAF1 (IPR006941),Ribonuclease H-like (IPR012337);Oryzabase=18271;TENOR=Os10t0123900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	1526340	1526367	.	-	.	Parent=Os10t0123900-00
Chr10	irgsp1_rep	CDS	1525512	1526339	.	-	0	Parent=Os10t0123900-00
Chr10	irgsp1_rep	mRNA	1530563	1532176	.	+	.	ID=Os10t0124000-01;Name=Os10t0124000-01;Locus_id=Os10g0124000;Note=Ribosomal protein L7A/RS6 family domain containing protein.;Transcript_evidence=AK121991 (DDBJ%2C Best hit);ORF_evidence=NP_193969.1 (RefSeq);GO=Biological Process: ribosome biogenesis (GO:0042254),Cellular Component: nucleolus (GO:0005730),Cellular Component: ribonucleoprotein complex (GO:0030529),Molecular Function: RNA binding (GO:0003723);InterPro=H/ACA ribonucleoprotein complex%2C subunit Nhp2%2C eukaryote (IPR002415),Ribosomal protein L7Ae conserved site (IPR004037),Ribosomal protein L7Ae/L30e/S12e/Gadd45 (IPR004038),Ribosomal protein L7Ae/L8/Nhp2 family (IPR018492);NIAS_FLcDNA=J033109K13;Expression=AK121991;TENOR=Os10t0124000-01;KEGG=Os10t0124000-01
Chr10	irgsp1_rep	five_prime_UTR	1530563	1530632	.	+	.	Parent=Os10t0124000-01
Chr10	irgsp1_rep	CDS	1530633	1530750	.	+	0	Parent=Os10t0124000-01
Chr10	irgsp1_rep	CDS	1530838	1530941	.	+	2	Parent=Os10t0124000-01
Chr10	irgsp1_rep	CDS	1531684	1531815	.	+	0	Parent=Os10t0124000-01
Chr10	irgsp1_rep	CDS	1531927	1531953	.	+	0	Parent=Os10t0124000-01
Chr10	irgsp1_rep	three_prime_UTR	1531954	1532176	.	+	.	Parent=Os10t0124000-01
Chr10	irgsp1_rep	mRNA	1532800	1536184	.	+	.	ID=Os10t0124100-01;Name=Os10t0124100-01;Locus_id=Os10g0124100;Note=Conserved hypothetical protein.;Transcript_evidence=AK120792 (DDBJ%2C Best hit);ORF_evidence=A2Z4N1 (UniProt);NIAS_FLcDNA=J023011O11;Expression=AK120792;TENOR=Os10t0124100-01;KEGG=Os10t0124100-01
Chr10	irgsp1_rep	five_prime_UTR	1532800	1532953	.	+	.	Parent=Os10t0124100-01
Chr10	irgsp1_rep	CDS	1532954	1533043	.	+	0	Parent=Os10t0124100-01
Chr10	irgsp1_rep	CDS	1534431	1534776	.	+	0	Parent=Os10t0124100-01
Chr10	irgsp1_rep	CDS	1534875	1536001	.	+	2	Parent=Os10t0124100-01
Chr10	irgsp1_rep	three_prime_UTR	1536002	1536184	.	+	.	Parent=Os10t0124100-01
Chr10	irgsp1_rep	mRNA	1534242	1536004	.	-	.	ID=Os10t0124150-00;Name=Os10t0124150-00;Locus_id=Os10g0124150;Note=Non-protein coding transcript.;Transcript_evidence=tplb0054a07 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os10t0124150-00
Chr10	irgsp1_rep	exon	1534902	1536004	.	-	.	Parent=Os10t0124150-00
Chr10	irgsp1_rep	exon	1534242	1534788	.	-	.	Parent=Os10t0124150-00
Chr10	irgsp1_rep	mRNA	1539462	1540349	.	+	.	ID=Os10t0124200-00;Name=Os10t0124200-00;Locus_id=Os10g0124200;Oryzabase Gene Symbol Synonym(s)=OsCAF1-15%2C OsCAF1I;Oryzabase Gene Name Synonym(s)=CCR4-associated factor 1-15%2C carbon catabolite repressor 4-associated factor 1-15%2C CCR4-associated factor 1I%2C carbon catabolite repressor 4-associated factor 1I;Note=Similar to CAF1 family ribonuclease containing protein.;Transcript_evidence=EU964095 (DDBJ);ORF_evidence=Q7G606 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676);InterPro=Ribonuclease CAF1 (IPR006941),Ribonuclease H-like (IPR012337);Oryzabase=18272;TENOR=Os10t0124200-00
Chr10	irgsp1_rep	CDS	1539462	1540349	.	+	0	Parent=Os10t0124200-00
Chr10	irgsp1_rep	mRNA	1545297	1548037	.	-	.	ID=Os10t0124400-00;Name=Os10t0124400-00;Locus_id=Os10g0124400;Note=Hypothetical conserved gene.;Transcript_evidence=CT835761 (DDBJ%2C Best hit);ORF_evidence=Q7G605 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os10t0124400-00;KEGG=Os10t0124400-00
Chr10	irgsp1_rep	five_prime_UTR	1548006	1548037	.	-	.	Parent=Os10t0124400-00
Chr10	irgsp1_rep	five_prime_UTR	1547741	1547851	.	-	.	Parent=Os10t0124400-00
Chr10	irgsp1_rep	five_prime_UTR	1546404	1546413	.	-	.	Parent=Os10t0124400-00
Chr10	irgsp1_rep	CDS	1545555	1546403	.	-	0	Parent=Os10t0124400-00
Chr10	irgsp1_rep	three_prime_UTR	1545297	1545554	.	-	.	Parent=Os10t0124400-00
Chr10	irgsp1_rep	mRNA	1556778	1559803	.	+	.	ID=Os10t0124500-01;Name=Os10t0124500-01;Locus_id=Os10g0124500;Oryzabase Gene Symbol Synonym(s)=OsFbox507%2C Os_F0071;Oryzabase Gene Name Synonym(s)=F-box protein 507;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK101708 (DDBJ%2C Best hit);ORF_evidence=A2Z4P1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033060K15;Oryzabase=17277;Expression=AK101708;TENOR=Os10t0124500-01;KEGG=Os10t0124500-01
Chr10	irgsp1_rep	five_prime_UTR	1556778	1556813	.	+	.	Parent=Os10t0124500-01
Chr10	irgsp1_rep	CDS	1556814	1558187	.	+	0	Parent=Os10t0124500-01
Chr10	irgsp1_rep	three_prime_UTR	1558188	1558224	.	+	.	Parent=Os10t0124500-01
Chr10	irgsp1_rep	three_prime_UTR	1559625	1559803	.	+	.	Parent=Os10t0124500-01
Chr10	irgsp1_rep	mRNA	1562608	1565335	.	-	.	ID=Os10t0124700-01;Name=Os10t0124700-01;Locus_id=Os10g0124700;Oryzabase Gene Symbol Synonym(s)=OsFbox508%2C Os_F0127;Oryzabase Gene Name Synonym(s)=F-box protein 508;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK064648 (DDBJ%2C Best hit);ORF_evidence=Q7G5F5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-114-D08;Oryzabase=17278;Expression=AK064648;TENOR=Os10t0124700-01;KEGG=Os10t0124700-01
Chr10	irgsp1_rep	five_prime_UTR	1565306	1565335	.	-	.	Parent=Os10t0124700-01
Chr10	irgsp1_rep	five_prime_UTR	1565051	1565126	.	-	.	Parent=Os10t0124700-01
Chr10	irgsp1_rep	five_prime_UTR	1564862	1564914	.	-	.	Parent=Os10t0124700-01
Chr10	irgsp1_rep	CDS	1564037	1564861	.	-	0	Parent=Os10t0124700-01
Chr10	irgsp1_rep	CDS	1563226	1563381	.	-	0	Parent=Os10t0124700-01
Chr10	irgsp1_rep	CDS	1562955	1563152	.	-	0	Parent=Os10t0124700-01
Chr10	irgsp1_rep	three_prime_UTR	1562608	1562954	.	-	.	Parent=Os10t0124700-01
Chr10	irgsp1_rep	mRNA	1591068	1594054	.	+	.	ID=Os10t0124900-01;Name=Os10t0124900-01;Locus_id=Os10g0124900;Note=Conserved hypothetical protein.;Transcript_evidence=AK287522 (DDBJ%2C Best hit);ORF_evidence=Q5Z6N1 (UniProt);NIAS_FLcDNA=J053058E14;TENOR=Os10t0124900-01
Chr10	irgsp1_rep	five_prime_UTR	1591068	1591513	.	+	.	Parent=Os10t0124900-01
Chr10	irgsp1_rep	CDS	1591514	1591864	.	+	0	Parent=Os10t0124900-01
Chr10	irgsp1_rep	CDS	1591958	1592051	.	+	0	Parent=Os10t0124900-01
Chr10	irgsp1_rep	CDS	1592637	1592701	.	+	2	Parent=Os10t0124900-01
Chr10	irgsp1_rep	CDS	1593796	1593819	.	+	0	Parent=Os10t0124900-01
Chr10	irgsp1_rep	three_prime_UTR	1593820	1594054	.	+	.	Parent=Os10t0124900-01
Chr10	irgsp1_rep	mRNA	1622224	1625009	.	-	.	ID=Os10t0125300-01;Name=Os10t0125300-01;Locus_id=Os10g0125300;Oryzabase Gene Symbol Synonym(s)=OsFbox509%2C Os_F0258%2C OsADF%2C ADF;Oryzabase Gene Name Synonym(s)=F-box protein 509%2C anther development F-box;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK241977 (DDBJ%2C Best hit);ORF_evidence=Q94LJ7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J075096M03;Oryzabase=17279;TENOR=Os10t0125300-01;KEGG=Os10t0125300-01
Chr10	irgsp1_rep	five_prime_UTR	1624855	1625009	.	-	.	Parent=Os10t0125300-01
Chr10	irgsp1_rep	five_prime_UTR	1624640	1624712	.	-	.	Parent=Os10t0125300-01
Chr10	irgsp1_rep	CDS	1623803	1624639	.	-	0	Parent=Os10t0125300-01
Chr10	irgsp1_rep	CDS	1622752	1622913	.	-	0	Parent=Os10t0125300-01
Chr10	irgsp1_rep	CDS	1622412	1622648	.	-	0	Parent=Os10t0125300-01
Chr10	irgsp1_rep	three_prime_UTR	1622224	1622411	.	-	.	Parent=Os10t0125300-01
Chr10	irgsp1_rep	mRNA	1643422	1646902	.	-	.	ID=Os10t0125600-01;Name=Os10t0125600-01;Locus_id=Os10g0125600;Note=Hypothetical gene.;Transcript_evidence=AK119418 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-132-G07;Expression=AK119418;TENOR=Os10t0125600-01;KEGG=Os10t0125600-01
Chr10	irgsp1_rep	five_prime_UTR	1644690	1646902	.	-	.	Parent=Os10t0125600-01
Chr10	irgsp1_rep	five_prime_UTR	1644401	1644566	.	-	.	Parent=Os10t0125600-01
Chr10	irgsp1_rep	five_prime_UTR	1644182	1644312	.	-	.	Parent=Os10t0125600-01
Chr10	irgsp1_rep	five_prime_UTR	1644020	1644082	.	-	.	Parent=Os10t0125600-01
Chr10	irgsp1_rep	five_prime_UTR	1643659	1643798	.	-	.	Parent=Os10t0125600-01
Chr10	irgsp1_rep	CDS	1643422	1643658	.	-	0	Parent=Os10t0125600-01
Chr10	irgsp1_rep	mRNA	1642417	1644857	.	-	.	ID=Os10t0125600-02;Name=Os10t0125600-02;Locus_id=Os10g0125600;Note=Hypothetical protein.;Transcript_evidence=AK064175 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-104-A09;Expression=AK064175;TENOR=Os10t0125600-02;KEGG=Os10t0125600-02
Chr10	irgsp1_rep	five_prime_UTR	1644690	1644857	.	-	.	Parent=Os10t0125600-02
Chr10	irgsp1_rep	five_prime_UTR	1644401	1644566	.	-	.	Parent=Os10t0125600-02
Chr10	irgsp1_rep	five_prime_UTR	1644182	1644312	.	-	.	Parent=Os10t0125600-02
Chr10	irgsp1_rep	five_prime_UTR	1644020	1644082	.	-	.	Parent=Os10t0125600-02
Chr10	irgsp1_rep	five_prime_UTR	1643659	1643798	.	-	.	Parent=Os10t0125600-02
Chr10	irgsp1_rep	CDS	1643182	1643658	.	-	0	Parent=Os10t0125600-02
Chr10	irgsp1_rep	three_prime_UTR	1642417	1643181	.	-	.	Parent=Os10t0125600-02
Chr10	irgsp1_rep	mRNA	1642565	1646770	.	+	.	ID=Os10t0125700-00;Name=Os10t0125700-00;Locus_id=Os10g0125700;Note=NB-ARC domain containing protein.;Transcript_evidence=EF155653 (DDBJ);ORF_evidence=NP_001064077.1 (RefSeq);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os10t0125700-00;KEGG=Os10t0125700-00
Chr10	irgsp1_rep	CDS	1642565	1646770	.	+	0	Parent=Os10t0125700-00
Chr10	irgsp1_rep	mRNA	1656688	1659249	.	-	.	ID=Os10t0126000-01;Name=Os10t0126000-01;Locus_id=Os10g0126000;Oryzabase Gene Symbol Synonym(s)=OsFbox510%2C Os_F0210;Oryzabase Gene Name Synonym(s)=F-box protein 510;Note=Similar to F-box domain containing protein%2C expressed.;Transcript_evidence=AK060187 (DDBJ%2C Best hit);ORF_evidence=Q33BA5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=001-001-D05;Oryzabase=17280;TENOR=Os10t0126000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	1659217	1659249	.	-	.	Parent=Os10t0126000-01
Chr10	irgsp1_rep	CDS	1658347	1659216	.	-	0	Parent=Os10t0126000-01
Chr10	irgsp1_rep	CDS	1657357	1657512	.	-	0	Parent=Os10t0126000-01
Chr10	irgsp1_rep	CDS	1657087	1657260	.	-	0	Parent=Os10t0126000-01
Chr10	irgsp1_rep	three_prime_UTR	1656688	1657086	.	-	.	Parent=Os10t0126000-01
Chr10	irgsp1_rep	mRNA	1667698	1669820	.	-	.	ID=Os10t0126100-00;Name=Os10t0126100-00;Locus_id=Os10g0126100;Note=Transposase%2C IS4-like domain containing protein.;Transcript_evidence=EU956013 (DDBJ);ORF_evidence=Q8S819 (UniProt);GO=Biological Process: transposition%2C DNA-mediated (GO:0006313),Molecular Function: DNA binding (GO:0003677),Molecular Function: transposase activity (GO:0004803);InterPro=Transposase%2C IS4-like (IPR002559);TENOR=Os10t0126100-00
Chr10	irgsp1_rep	CDS	1669516	1669820	.	-	0	Parent=Os10t0126100-00
Chr10	irgsp1_rep	CDS	1667698	1668877	.	-	1	Parent=Os10t0126100-00
Chr10	irgsp1_rep	mRNA	1681092	1684225	.	-	.	ID=Os10t0126500-01;Name=Os10t0126500-01;Locus_id=Os10g0126500;Oryzabase Gene Symbol Synonym(s)=OsFbox511%2C Os_F0112;Oryzabase Gene Name Synonym(s)=F-box protein 511;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK064296 (DDBJ%2C Best hit);ORF_evidence=Q33BA2 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Armadillo-like helical (IPR011989),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-107-A03;Oryzabase=17281;Expression=AK064296;TENOR=Os10t0126500-01;KEGG=Os10t0126500-01
Chr10	irgsp1_rep	five_prime_UTR	1684192	1684225	.	-	.	Parent=Os10t0126500-01
Chr10	irgsp1_rep	five_prime_UTR	1683986	1684048	.	-	.	Parent=Os10t0126500-01
Chr10	irgsp1_rep	CDS	1683113	1683985	.	-	0	Parent=Os10t0126500-01
Chr10	irgsp1_rep	CDS	1681817	1681972	.	-	0	Parent=Os10t0126500-01
Chr10	irgsp1_rep	CDS	1681373	1681720	.	-	0	Parent=Os10t0126500-01
Chr10	irgsp1_rep	three_prime_UTR	1681092	1681372	.	-	.	Parent=Os10t0126500-01
Chr10	irgsp1_rep	mRNA	1688331	1691224	.	-	.	ID=Os10t0126600-01;Name=Os10t0126600-01;Locus_id=Os10g0126600;Oryzabase Gene Symbol Synonym(s)=OsFbox512%2C Os_F0102;Oryzabase Gene Name Synonym(s)=F-box protein 512;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK102940 (DDBJ%2C Best hit);ORF_evidence=Q7G5F5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033114K11;Oryzabase=17282;Expression=AK102940;TENOR=Os10t0126600-01;KEGG=Os10t0126600-01
Chr10	irgsp1_rep	five_prime_UTR	1690963	1691224	.	-	.	Parent=Os10t0126600-01
Chr10	irgsp1_rep	CDS	1690072	1690962	.	-	0	Parent=Os10t0126600-01
Chr10	irgsp1_rep	CDS	1688920	1689075	.	-	0	Parent=Os10t0126600-01
Chr10	irgsp1_rep	CDS	1688787	1688795	.	-	0	Parent=Os10t0126600-01
Chr10	irgsp1_rep	three_prime_UTR	1688331	1688786	.	-	.	Parent=Os10t0126600-01
Chr10	irgsp1_rep	mRNA	1694920	1697854	.	-	.	ID=Os10t0126700-01;Name=Os10t0126700-01;Locus_id=Os10g0126700;Oryzabase Gene Symbol Synonym(s)=OsFbox513%2C Os_F0131;Oryzabase Gene Name Synonym(s)=F-box protein 513;Note=Similar to F-box domain containing protein%2C expressed.;Transcript_evidence=AK101761 (DDBJ%2C Best hit);ORF_evidence=Q33BA2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033064B15;Oryzabase=17283;TENOR=Os10t0126700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	1697730	1697854	.	-	.	Parent=Os10t0126700-01
Chr10	irgsp1_rep	five_prime_UTR	1697555	1697613	.	-	.	Parent=Os10t0126700-01
Chr10	irgsp1_rep	CDS	1696667	1697554	.	-	0	Parent=Os10t0126700-01
Chr10	irgsp1_rep	CDS	1695674	1695829	.	-	0	Parent=Os10t0126700-01
Chr10	irgsp1_rep	CDS	1695296	1695577	.	-	0	Parent=Os10t0126700-01
Chr10	irgsp1_rep	three_prime_UTR	1694920	1695295	.	-	.	Parent=Os10t0126700-01
Chr10	irgsp1_rep	mRNA	1700332	1702953	.	-	.	ID=Os10t0126800-01;Name=Os10t0126800-01;Locus_id=Os10g0126800;Oryzabase Gene Symbol Synonym(s)=OsFbox514%2C Os_F0140;Oryzabase Gene Name Synonym(s)=F-box protein 514;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK106453 (DDBJ%2C Best hit);ORF_evidence=Q33BA2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-103-F08;Oryzabase=17284;Expression=AK106453;TENOR=Os10t0126800-01;KEGG=Os10t0126800-01
Chr10	irgsp1_rep	five_prime_UTR	1702906	1702953	.	-	.	Parent=Os10t0126800-01
Chr10	irgsp1_rep	CDS	1702857	1702905	.	-	0	Parent=Os10t0126800-01
Chr10	irgsp1_rep	CDS	1701743	1702704	.	-	2	Parent=Os10t0126800-01
Chr10	irgsp1_rep	CDS	1700860	1701015	.	-	0	Parent=Os10t0126800-01
Chr10	irgsp1_rep	CDS	1700561	1700758	.	-	0	Parent=Os10t0126800-01
Chr10	irgsp1_rep	three_prime_UTR	1700332	1700560	.	-	.	Parent=Os10t0126800-01
Chr10	irgsp1_rep	mRNA	1711433	1713322	.	-	.	ID=Os10t0127000-01;Name=Os10t0127000-01;Locus_id=Os10g0127000;Note=Similar to F-box domain containing protein%2C expressed.;Transcript_evidence=AK063758 (DDBJ%2C Best hit);ORF_evidence=Q33B97 (UniProt);NIAS_FLcDNA=001-121-A09;Expression=AK063758;TENOR=Os10t0127000-01;KEGG=Os10t0127000-01
Chr10	irgsp1_rep	five_prime_UTR	1713321	1713322	.	-	.	Parent=Os10t0127000-01
Chr10	irgsp1_rep	CDS	1713231	1713320	.	-	0	Parent=Os10t0127000-01
Chr10	irgsp1_rep	CDS	1712054	1712209	.	-	0	Parent=Os10t0127000-01
Chr10	irgsp1_rep	CDS	1711726	1711953	.	-	0	Parent=Os10t0127000-01
Chr10	irgsp1_rep	three_prime_UTR	1711433	1711725	.	-	.	Parent=Os10t0127000-01
Chr10	irgsp1_rep	mRNA	1726495	1727783	.	+	.	ID=Os10t0127350-00;Name=Os10t0127350-00;Locus_id=Os10g0127350;Note=Glycosyl transferase%2C family 14 domain containing protein.;Transcript_evidence=EU975658 (DDBJ);ORF_evidence=F2DV08 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: acetylglucosaminyltransferase activity (GO:0008375);InterPro=Glycosyl transferase%2C family 14 (IPR003406);TENOR=Os10t0127350-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	1726495	1726864	.	+	.	Parent=Os10t0127350-00
Chr10	irgsp1_rep	CDS	1726865	1727178	.	+	0	Parent=Os10t0127350-00
Chr10	irgsp1_rep	CDS	1727258	1727783	.	+	1	Parent=Os10t0127350-00
Chr10	irgsp1_rep	mRNA	1729343	1740063	.	-	.	ID=Os10t0127700-01;Name=Os10t0127700-01;Locus_id=Os10g0127700;Note=Protein of unknown function DUF639 family protein.;Transcript_evidence=AK072882 (DDBJ%2C Best hit);ORF_evidence=B8BFF8 (UniProt);InterPro=Protein of unknown function DUF639 (IPR006927);NIAS_FLcDNA=J023149K11;Expression=AK072882;TENOR=Os10t0127700-01;KEGG=Os10t0127700-01
Chr10	irgsp1_rep	five_prime_UTR	1739771	1740063	.	-	.	Parent=Os10t0127700-01
Chr10	irgsp1_rep	CDS	1739556	1739770	.	-	0	Parent=Os10t0127700-01
Chr10	irgsp1_rep	CDS	1738579	1738813	.	-	1	Parent=Os10t0127700-01
Chr10	irgsp1_rep	CDS	1738246	1738415	.	-	0	Parent=Os10t0127700-01
Chr10	irgsp1_rep	CDS	1736623	1736765	.	-	1	Parent=Os10t0127700-01
Chr10	irgsp1_rep	CDS	1736323	1736500	.	-	2	Parent=Os10t0127700-01
Chr10	irgsp1_rep	CDS	1735096	1735663	.	-	1	Parent=Os10t0127700-01
Chr10	irgsp1_rep	CDS	1733973	1734085	.	-	0	Parent=Os10t0127700-01
Chr10	irgsp1_rep	CDS	1731216	1731459	.	-	1	Parent=Os10t0127700-01
Chr10	irgsp1_rep	CDS	1729588	1729815	.	-	0	Parent=Os10t0127700-01
Chr10	irgsp1_rep	three_prime_UTR	1729343	1729587	.	-	.	Parent=Os10t0127700-01
Chr10	irgsp1_rep	mRNA	1743579	1752159	.	-	.	ID=Os10t0127900-01;Name=Os10t0127900-01;Locus_id=Os10g0127900;Oryzabase Gene Symbol Synonym(s)=OsFbx352%2C OsFbox516%2C Os_F0046;Oryzabase Gene Name Synonym(s)=F-box gene 352%2C F-box domain protein 352%2C F-box protein 516;Note=Similar to F-box domain containing protein%2C expressed.;Transcript_evidence=AK104771 (DDBJ%2C Best hit),AK060163 (DDBJ%2C Best hit);ORF_evidence=Q33B97 (UniProt);NIAS_FLcDNA=001-039-A08,006-311-B01;Oryzabase=11065;Expression=AK104771;TENOR=Os10t0127900-01;KEGG=Os10t0127900-01
Chr10	irgsp1_rep	five_prime_UTR	1752018	1752159	.	-	.	Parent=Os10t0127900-01
Chr10	irgsp1_rep	CDS	1751907	1752017	.	-	0	Parent=Os10t0127900-01
Chr10	irgsp1_rep	CDS	1744259	1744414	.	-	0	Parent=Os10t0127900-01
Chr10	irgsp1_rep	CDS	1743938	1744159	.	-	0	Parent=Os10t0127900-01
Chr10	irgsp1_rep	three_prime_UTR	1743579	1743937	.	-	.	Parent=Os10t0127900-01
Chr10	irgsp1_rep	mRNA	1743579	1752158	.	-	.	ID=Os10t0127900-02;Name=Os10t0127900-02;Locus_id=Os10g0127900;Oryzabase Gene Symbol Synonym(s)=OsFbx352%2C OsFbox516%2C Os_F0046;Oryzabase Gene Name Synonym(s)=F-box gene 352%2C F-box domain protein 352%2C F-box protein 516;Note=Similar to F-box domain containing protein%2C expressed.;Transcript_evidence=AK121817 (DDBJ%2C Best hit);ORF_evidence=Q33B97 (UniProt);NIAS_FLcDNA=J033098N17;Oryzabase=11065;Expression=AK121817;TENOR=Os10t0127900-02;KEGG=Os10t0127900-02
Chr10	irgsp1_rep	five_prime_UTR	1752018	1752158	.	-	.	Parent=Os10t0127900-02
Chr10	irgsp1_rep	CDS	1751907	1752017	.	-	0	Parent=Os10t0127900-02
Chr10	irgsp1_rep	CDS	1745679	1746068	.	-	0	Parent=Os10t0127900-02
Chr10	irgsp1_rep	CDS	1744259	1744414	.	-	0	Parent=Os10t0127900-02
Chr10	irgsp1_rep	CDS	1743938	1744159	.	-	0	Parent=Os10t0127900-02
Chr10	irgsp1_rep	three_prime_UTR	1743579	1743937	.	-	.	Parent=Os10t0127900-02
Chr10	irgsp1_rep	mRNA	1743605	1746986	.	-	.	ID=Os10t0127900-03;Name=Os10t0127900-03;Locus_id=Os10g0127900;RAP-DB Gene Symbol Synonym(s)=OsFbx352;RAP-DB Gene Name Synonym(s)=F-box domain protein 352%2C F-box gene 352;Oryzabase Gene Symbol Synonym(s)=OsFbx352%2C OsFbox516%2C Os_F0046;Oryzabase Gene Name Synonym(s)=F-box gene 352%2C F-box domain protein 352%2C F-box protein 516;Note=F-box domain containing protein%2C Regulation of glucose-induced delay of seed germination;Transcript_evidence=AK101231;ORF_evidence=Q33B97;GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box-like domain superfamily (IPR036047),Leucine-rich repeat domain superfamily (IPR032675),F-box domain (IPR001810);NIAS_FLcDNA=J033098N17;Manual Curation=February 15%2C 2019;Literature_PMID=22859682;Oryzabase=11065;Expression=AK101231;TENOR=Os10t0127900-03
Chr10	irgsp1_rep	five_prime_UTR	1746786	1746986	.	-	.	Parent=Os10t0127900-03
Chr10	irgsp1_rep	five_prime_UTR	1746576	1746612	.	-	.	Parent=Os10t0127900-03
Chr10	irgsp1_rep	CDS	1745679	1746575	.	-	0	Parent=Os10t0127900-03
Chr10	irgsp1_rep	CDS	1744259	1744414	.	-	0	Parent=Os10t0127900-03
Chr10	irgsp1_rep	CDS	1743938	1744159	.	-	0	Parent=Os10t0127900-03
Chr10	irgsp1_rep	three_prime_UTR	1743605	1743937	.	-	.	Parent=Os10t0127900-03
Chr10	irgsp1_rep	mRNA	1755462	1757886	.	-	.	ID=Os10t0128200-01;Name=Os10t0128200-01;Locus_id=Os10g0128200;Oryzabase Gene Symbol Synonym(s)=OsFbox517%2C Os_F0054;Oryzabase Gene Name Synonym(s)=F-box protein 517;Note=Similar to F-box domain containing protein%2C expressed.;Transcript_evidence=AK110742 (DDBJ%2C Best hit);ORF_evidence=Q7G5F5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-170-F09;Oryzabase=17286;TENOR=Os10t0128200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	1757856	1757886	.	-	.	Parent=Os10t0128200-01
Chr10	irgsp1_rep	CDS	1756998	1757855	.	-	0	Parent=Os10t0128200-01
Chr10	irgsp1_rep	CDS	1756002	1756157	.	-	0	Parent=Os10t0128200-01
Chr10	irgsp1_rep	CDS	1755679	1755900	.	-	0	Parent=Os10t0128200-01
Chr10	irgsp1_rep	three_prime_UTR	1755462	1755678	.	-	.	Parent=Os10t0128200-01
Chr10	irgsp1_rep	mRNA	1766346	1767221	.	+	.	ID=Os10t0128300-00;Name=Os10t0128300-00;Locus_id=Os10g0128300;Oryzabase Gene Symbol Synonym(s)=OsCAF1-16%2C OsCAF1E;Oryzabase Gene Name Synonym(s)=CCR4-associated factor 1-16%2C carbon catabolite repressor 4-associated factor 1-16%2C CCR4-associated factor 1E%2C carbon catabolite repressor 4-associated factor 1E;Note=Ribonuclease CAF1 domain containing protein.;Transcript_evidence=FP094520 (DDBJ);ORF_evidence=Q8S804 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676);InterPro=Ribonuclease CAF1 (IPR006941),Ribonuclease H-like (IPR012337);Oryzabase=18273;TENOR=Os10t0128300-00
Chr10	irgsp1_rep	CDS	1766346	1767221	.	+	0	Parent=Os10t0128300-00
Chr10	irgsp1_rep	mRNA	1768446	1771280	.	+	.	ID=Os10t0128400-01;Name=Os10t0128400-01;Locus_id=Os10g0128400;Note=Conserved hypothetical protein.;Transcript_evidence=AK070865 (DDBJ%2C Best hit);ORF_evidence=B9G7C9 (UniProt);NIAS_FLcDNA=J023074O08;TENOR=Os10t0128400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	1768446	1768749	.	+	0	Parent=Os10t0128400-01
Chr10	irgsp1_rep	CDS	1769088	1769152	.	+	2	Parent=Os10t0128400-01
Chr10	irgsp1_rep	three_prime_UTR	1769153	1769231	.	+	.	Parent=Os10t0128400-01
Chr10	irgsp1_rep	three_prime_UTR	1770141	1771280	.	+	.	Parent=Os10t0128400-01
Chr10	irgsp1_rep	mRNA	1769240	1769889	.	+	.	ID=Os10t0128502-00;Name=Os10t0128502-00;Locus_id=Os10g0128502;Note=Hypothetical conserved gene.;Transcript_evidence=CT835790 (DDBJ%2C Secondary hit);ORF_evidence=Q5Z786 (UniProt);TENOR=Os10t0128502-00;KEGG=Os10t0128502-00
Chr10	irgsp1_rep	five_prime_UTR	1769240	1769470	.	+	.	Parent=Os10t0128502-00
Chr10	irgsp1_rep	CDS	1769471	1769611	.	+	0	Parent=Os10t0128502-00
Chr10	irgsp1_rep	three_prime_UTR	1769612	1769889	.	+	.	Parent=Os10t0128502-00
Chr10	irgsp1_rep	mRNA	1774786	1777638	.	-	.	ID=Os10t0128600-01;Name=Os10t0128600-01;Locus_id=Os10g0128600;Oryzabase Gene Symbol Synonym(s)=OsFbox518%2C Os_F0218;Oryzabase Gene Name Synonym(s)=F-box protein 518;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK063687 (DDBJ%2C Best hit);ORF_evidence=Q8L671 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=001-119-F04;Oryzabase=17287;Expression=AK063687;TENOR=Os10t0128600-01;KEGG=Os10t0128600-01
Chr10	irgsp1_rep	five_prime_UTR	1777637	1777638	.	-	.	Parent=Os10t0128600-01
Chr10	irgsp1_rep	CDS	1777578	1777636	.	-	0	Parent=Os10t0128600-01
Chr10	irgsp1_rep	CDS	1777355	1777405	.	-	1	Parent=Os10t0128600-01
Chr10	irgsp1_rep	CDS	1776264	1777185	.	-	1	Parent=Os10t0128600-01
Chr10	irgsp1_rep	CDS	1775387	1775542	.	-	0	Parent=Os10t0128600-01
Chr10	irgsp1_rep	CDS	1775104	1775277	.	-	0	Parent=Os10t0128600-01
Chr10	irgsp1_rep	three_prime_UTR	1774786	1775103	.	-	.	Parent=Os10t0128600-01
Chr10	irgsp1_rep	mRNA	1778491	1779210	.	+	.	ID=Os10t0128700-00;Name=Os10t0128700-00;Locus_id=Os10g0128700;Note=Conserved hypothetical protein.;Transcript_evidence=FP092844 (DDBJ);ORF_evidence=Q94HJ7 (UniProt);TENOR=Os10t0128700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	1778491	1778706	.	+	.	Parent=Os10t0128700-00
Chr10	irgsp1_rep	CDS	1778707	1778949	.	+	0	Parent=Os10t0128700-00
Chr10	irgsp1_rep	three_prime_UTR	1778950	1779210	.	+	.	Parent=Os10t0128700-00
Chr10	irgsp1_rep	mRNA	1783118	1783977	.	+	.	ID=Os10t0128900-00;Name=Os10t0128900-00;Locus_id=Os10g0128900;Note=Conserved hypothetical protein.;Transcript_evidence=FP092641 (DDBJ);ORF_evidence=Q8LSS0 (UniProt);TENOR=Os10t0128900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	1783118	1783323	.	+	.	Parent=Os10t0128900-00
Chr10	irgsp1_rep	CDS	1783324	1783977	.	+	0	Parent=Os10t0128900-00
Chr10	irgsp1_rep	mRNA	1785224	1788076	.	-	.	ID=Os10t0129100-01;Name=Os10t0129100-01;Locus_id=Os10g0129100;Oryzabase Gene Symbol Synonym(s)=OsFbox519;Oryzabase Gene Name Synonym(s)=F-box protein 519;Note=Similar to cDNA clone:001-119-F04%2C full insert sequence.;Transcript_evidence=CT836543 (DDBJ%2C Best hit);ORF_evidence=Q7G5F2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17288;TENOR=Os10t0129100-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	1788012	1788076	.	-	.	Parent=Os10t0129100-01
Chr10	irgsp1_rep	five_prime_UTR	1787780	1787834	.	-	.	Parent=Os10t0129100-01
Chr10	irgsp1_rep	five_prime_UTR	1787533	1787587	.	-	.	Parent=Os10t0129100-01
Chr10	irgsp1_rep	CDS	1787128	1787532	.	-	0	Parent=Os10t0129100-01
Chr10	irgsp1_rep	three_prime_UTR	1785820	1787127	.	-	.	Parent=Os10t0129100-01
Chr10	irgsp1_rep	three_prime_UTR	1785569	1785718	.	-	.	Parent=Os10t0129100-01
Chr10	irgsp1_rep	three_prime_UTR	1785224	1785432	.	-	.	Parent=Os10t0129100-01
Chr10	irgsp1_rep	mRNA	1792146	1793090	.	+	.	ID=Os10t0129200-00;Name=Os10t0129200-00;Locus_id=Os10g0129200;Note=Similar to OSIGBa0140L04.2 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01MT2 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Legume lectin%2C beta chain (IPR001220),Concanavalin A-like lectin/glucanase (IPR008985),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Lectin (IPR016363),Legume lectin%2C beta chain%2C Mn/Ca-binding site (IPR019825);TENOR=Os10t0129200-00
Chr10	irgsp1_rep	CDS	1792146	1793090	.	+	0	Parent=Os10t0129200-00
Chr10	irgsp1_rep	mRNA	1820226	1820555	.	+	.	ID=Os10t0129732-00;Name=Os10t0129732-00;Locus_id=Os10g0129732;Note=Similar to OSIGBa0140L04.3 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01MT1 (UniProt);TENOR=Os10t0129732-00
Chr10	irgsp1_rep	CDS	1820226	1820555	.	+	0	Parent=Os10t0129732-00
Chr10	irgsp1_rep	mRNA	1829318	1834901	.	-	.	ID=Os10t0130000-00;Name=Os10t0130000-00;Locus_id=Os10g0130000;Note=Similar to NPKL1.;Transcript_evidence=AK361446 (DDBJ);ORF_evidence=B8QUI8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os10t0130000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	1833726	1834901	.	-	0	Parent=Os10t0130000-00
Chr10	irgsp1_rep	CDS	1829318	1830397	.	-	0	Parent=Os10t0130000-00
Chr10	irgsp1_rep	mRNA	1829368	1830416	.	+	.	ID=Os10t0130066-00;Name=Os10t0130066-00;Locus_id=Os10g0130066;Note=Hypothetical protein.;Transcript_evidence=tplb0040o12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0130066-00
Chr10	irgsp1_rep	five_prime_UTR	1829368	1829445	.	+	.	Parent=Os10t0130066-00
Chr10	irgsp1_rep	CDS	1829446	1830003	.	+	0	Parent=Os10t0130066-00
Chr10	irgsp1_rep	three_prime_UTR	1830004	1830416	.	+	.	Parent=Os10t0130066-00
Chr10	irgsp1_rep	mRNA	1833729	1834740	.	+	.	ID=Os10t0130132-00;Name=Os10t0130132-00;Locus_id=Os10g0130132;Note=Hypothetical protein.;Transcript_evidence=tplb0040o12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0130132-00
Chr10	irgsp1_rep	five_prime_UTR	1833729	1833804	.	+	.	Parent=Os10t0130132-00
Chr10	irgsp1_rep	CDS	1833805	1834395	.	+	0	Parent=Os10t0130132-00
Chr10	irgsp1_rep	three_prime_UTR	1834396	1834740	.	+	.	Parent=Os10t0130132-00
Chr10	irgsp1_rep	mRNA	1838774	1839900	.	+	.	ID=Os10t0130200-00;Name=Os10t0130200-00;Locus_id=Os10g0130200;Oryzabase Gene Symbol Synonym(s)=OsFbox520%2C Os_F0588;Oryzabase Gene Name Synonym(s)=F-box protein 520;Note=Hypothetical conserved gene.;Transcript_evidence=tplb0029f14 (Wheat FLcDNA);ORF_evidence=NP_001064095.2 (RefSeq);InterPro=F-box domain%2C Skp2-like (IPR022364);Oryzabase=17289;TENOR=Os10t0130200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	1838774	1839853	.	+	0	Parent=Os10t0130200-00
Chr10	irgsp1_rep	three_prime_UTR	1839854	1839900	.	+	.	Parent=Os10t0130200-00
Chr10	irgsp1_rep	mRNA	1841752	1842853	.	+	.	ID=Os10t0130300-00;Name=Os10t0130300-00;Locus_id=Os10g0130300;Note=F-box domain%2C Skp2-like domain containing protein.;Transcript_evidence=tplb0029f14 (Wheat FLcDNA);ORF_evidence=Q8L535 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);TENOR=Os10t0130300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	1841752	1842846	.	+	0	Parent=Os10t0130300-00
Chr10	irgsp1_rep	three_prime_UTR	1842847	1842853	.	+	.	Parent=Os10t0130300-00
Chr10	irgsp1_rep	mRNA	1858233	1860626	.	+	.	ID=Os10t0130500-01;Name=Os10t0130500-01;Locus_id=Os10g0130500;Note=Hypothetical protein.;Transcript_evidence=AK066967 (DDBJ%2C Best hit),AK104790 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013090L19,001-039-F03;TENOR=Os10t0130500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	1858233	1858451	.	+	0	Parent=Os10t0130500-01
Chr10	irgsp1_rep	three_prime_UTR	1858452	1858508	.	+	.	Parent=Os10t0130500-01
Chr10	irgsp1_rep	three_prime_UTR	1859559	1860626	.	+	.	Parent=Os10t0130500-01
Chr10	irgsp1_rep	mRNA	1858234	1866072	.	+	.	ID=Os10t0130500-02;Name=Os10t0130500-02;Locus_id=Os10g0130500;Note=Hypothetical protein.;Transcript_evidence=AK120243 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J013044H03;TENOR=Os10t0130500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	1858234	1858508	.	+	.	Parent=Os10t0130500-02
Chr10	irgsp1_rep	five_prime_UTR	1859559	1863032	.	+	.	Parent=Os10t0130500-02
Chr10	irgsp1_rep	CDS	1863033	1863245	.	+	0	Parent=Os10t0130500-02
Chr10	irgsp1_rep	three_prime_UTR	1863246	1864992	.	+	.	Parent=Os10t0130500-02
Chr10	irgsp1_rep	three_prime_UTR	1865071	1865371	.	+	.	Parent=Os10t0130500-02
Chr10	irgsp1_rep	three_prime_UTR	1865464	1866072	.	+	.	Parent=Os10t0130500-02
Chr10	irgsp1_rep	mRNA	1871104	1875535	.	-	.	ID=Os10t0130600-00;Name=Os10t0130600-00;Locus_id=Os10g0130600;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8LM67 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: protein binding (GO:0005515),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),Leucine-rich repeat (IPR001611),NB-ARC (IPR002182);TENOR=Os10t0130600-00;KEGG=Os10t0130600-00
Chr10	irgsp1_rep	CDS	1871815	1875535	.	-	0	Parent=Os10t0130600-00
Chr10	irgsp1_rep	CDS	1871628	1871692	.	-	2	Parent=Os10t0130600-00
Chr10	irgsp1_rep	CDS	1871104	1871235	.	-	0	Parent=Os10t0130600-00
Chr10	irgsp1_rep	mRNA	1884637	1887750	.	+	.	ID=Os10t0130701-01;Name=Os10t0130701-01;Locus_id=Os10g0130701;Note=Hypothetical conserved gene.;Transcript_evidence=AK072920 (DDBJ%2C Best hit);ORF_evidence=Q8L4L9 (UniProt);NIAS_FLcDNA=J023146D21;Expression=AK072920;TENOR=Os10t0130701-01;KEGG=Os10t0130701-01
Chr10	irgsp1_rep	five_prime_UTR	1884637	1884880	.	+	.	Parent=Os10t0130701-01
Chr10	irgsp1_rep	CDS	1884881	1887244	.	+	0	Parent=Os10t0130701-01
Chr10	irgsp1_rep	three_prime_UTR	1887245	1887750	.	+	.	Parent=Os10t0130701-01
Chr10	irgsp1_rep	mRNA	1890053	1893891	.	-	.	ID=Os10t0130800-01;Name=Os10t0130800-01;Locus_id=Os10g0130800;Note=Conserved hypothetical protein.;Transcript_evidence=AK120449 (DDBJ%2C Best hit);ORF_evidence=A3C286 (UniProt);NIAS_FLcDNA=J013101D04;Expression=AK120449;TENOR=Os10t0130800-01;KEGG=Os10t0130800-01
Chr10	irgsp1_rep	five_prime_UTR	1893816	1893891	.	-	.	Parent=Os10t0130800-01
Chr10	irgsp1_rep	five_prime_UTR	1893711	1893736	.	-	.	Parent=Os10t0130800-01
Chr10	irgsp1_rep	CDS	1893294	1893710	.	-	0	Parent=Os10t0130800-01
Chr10	irgsp1_rep	three_prime_UTR	1890053	1893293	.	-	.	Parent=Os10t0130800-01
Chr10	irgsp1_rep	mRNA	1897742	1902389	.	-	.	ID=Os10t0130900-00;Name=Os10t0130900-00;Locus_id=Os10g0130900;Note=Hypothetical protein.;Transcript_evidence=tplb0031m13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0130900-00
Chr10	irgsp1_rep	five_prime_UTR	1902262	1902389	.	-	.	Parent=Os10t0130900-00
Chr10	irgsp1_rep	five_prime_UTR	1899951	1900548	.	-	.	Parent=Os10t0130900-00
Chr10	irgsp1_rep	CDS	1899516	1899950	.	-	0	Parent=Os10t0130900-00
Chr10	irgsp1_rep	three_prime_UTR	1898742	1899515	.	-	.	Parent=Os10t0130900-00
Chr10	irgsp1_rep	three_prime_UTR	1897742	1898619	.	-	.	Parent=Os10t0130900-00
Chr10	irgsp1_rep	mRNA	1897769	1902437	.	+	.	ID=Os10t0131000-00;Name=Os10t0131000-00;Locus_id=Os10g0131000;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=tplb0009l23 (Wheat FLcDNA);ORF_evidence=Q33B89 (UniProt);TENOR=Os10t0131000-00;KEGG=Os10t0131000-00
Chr10	irgsp1_rep	five_prime_UTR	1897769	1897783	.	+	.	Parent=Os10t0131000-00
Chr10	irgsp1_rep	CDS	1897784	1898434	.	+	0	Parent=Os10t0131000-00
Chr10	irgsp1_rep	three_prime_UTR	1898435	1898633	.	+	.	Parent=Os10t0131000-00
Chr10	irgsp1_rep	three_prime_UTR	1898751	1900566	.	+	.	Parent=Os10t0131000-00
Chr10	irgsp1_rep	three_prime_UTR	1902281	1902437	.	+	.	Parent=Os10t0131000-00
Chr10	irgsp1_rep	mRNA	1905537	1909360	.	-	.	ID=Os10t0131100-00;Name=Os10t0131100-00;Locus_id=Os10g0131100;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=AK371992 (DDBJ);ORF_evidence=Q8LM67 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: protein binding (GO:0005515),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),Leucine-rich repeat (IPR001611),NB-ARC (IPR002182);TENOR=Os10t0131100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	1909317	1909360	.	-	.	Parent=Os10t0131100-00
Chr10	irgsp1_rep	CDS	1905537	1909316	.	-	0	Parent=Os10t0131100-00
Chr10	irgsp1_rep	mRNA	1913330	1915825	.	+	.	ID=Os10t0131200-01;Name=Os10t0131200-01;Locus_id=Os10g0131200;Note=Conserved hypothetical protein.;Transcript_evidence=AK102683 (DDBJ%2C Best hit);ORF_evidence=B9G7D9 (UniProt);NIAS_FLcDNA=J033102K22;Expression=AK102683;TENOR=Os10t0131200-01;KEGG=Os10t0131200-01
Chr10	irgsp1_rep	five_prime_UTR	1913330	1914222	.	+	.	Parent=Os10t0131200-01
Chr10	irgsp1_rep	CDS	1914223	1915089	.	+	0	Parent=Os10t0131200-01
Chr10	irgsp1_rep	three_prime_UTR	1915090	1915193	.	+	.	Parent=Os10t0131200-01
Chr10	irgsp1_rep	three_prime_UTR	1915353	1915825	.	+	.	Parent=Os10t0131200-01
Chr10	irgsp1_rep	mRNA	1932725	1933882	.	-	.	ID=Os10t0131500-00;Name=Os10t0131500-00;Locus_id=Os10g0131500;Note=NB-ARC domain containing protein.;Transcript_evidence=AK249325 (DDBJ);ORF_evidence=Q8H8A6 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os10t0131500-00
Chr10	irgsp1_rep	CDS	1932725	1933882	.	-	0	Parent=Os10t0131500-00
Chr10	irgsp1_rep	mRNA	1938498	1939110	.	-	.	ID=Os10t0131550-00;Name=Os10t0131550-00;Locus_id=Os10g0131550;Note=Conserved hypothetical protein.;Transcript_evidence=CT835588 (DDBJ%2C Secondary hit);ORF_evidence=Q69Y33 (UniProt);TENOR=Os10t0131550-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	1939089	1939110	.	-	.	Parent=Os10t0131550-00
Chr10	irgsp1_rep	CDS	1938780	1939088	.	-	0	Parent=Os10t0131550-00
Chr10	irgsp1_rep	three_prime_UTR	1938498	1938779	.	-	.	Parent=Os10t0131550-00
Chr10	irgsp1_rep	mRNA	1942283	1944242	.	-	.	ID=Os10t0131701-00;Name=Os10t0131701-00;Locus_id=Os10g0131701;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0014n19 (Wheat FLcDNA);ORF_evidence=NP_001176100.1 (RefSeq);TENOR=Os10t0131701-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	1944230	1944242	.	-	.	Parent=Os10t0131701-00
Chr10	irgsp1_rep	CDS	1943900	1944229	.	-	0	Parent=Os10t0131701-00
Chr10	irgsp1_rep	three_prime_UTR	1942283	1943899	.	-	.	Parent=Os10t0131701-00
Chr10	irgsp1_rep	mRNA	1948311	1949064	.	+	.	ID=Os10t0131750-00;Name=Os10t0131750-00;Locus_id=Os10g0131750;Note=Similar to tubulin beta-4 chain.;Transcript_evidence=BT037474 (DDBJ);ORF_evidence=NP_001105457.1 (RefSeq);TENOR=Os10t0131750-00
Chr10	irgsp1_rep	CDS	1948311	1948498	.	+	0	Parent=Os10t0131750-00
Chr10	irgsp1_rep	CDS	1948952	1948979	.	+	1	Parent=Os10t0131750-00
Chr10	irgsp1_rep	three_prime_UTR	1948980	1949064	.	+	.	Parent=Os10t0131750-00
Chr10	irgsp1_rep	mRNA	1949425	1956931	.	-	.	ID=Os10t0131800-01;Name=Os10t0131800-01;Locus_id=Os10g0131800;Note=Similar to NBS-LRR class disease resistance protein.;Transcript_evidence=AK242729 (DDBJ%2C Best hit),AK242972 (DDBJ%2C Best hit);ORF_evidence=D5L9H8 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J090047B15,J090091H21;TENOR=Os10t0131800-01;KEGG=Os10t0131800-01
Chr10	irgsp1_rep	five_prime_UTR	1956760	1956931	.	-	.	Parent=Os10t0131800-01
Chr10	irgsp1_rep	five_prime_UTR	1955668	1955685	.	-	.	Parent=Os10t0131800-01
Chr10	irgsp1_rep	CDS	1954700	1955667	.	-	0	Parent=Os10t0131800-01
Chr10	irgsp1_rep	CDS	1949639	1951742	.	-	1	Parent=Os10t0131800-01
Chr10	irgsp1_rep	three_prime_UTR	1949425	1949638	.	-	.	Parent=Os10t0131800-01
Chr10	irgsp1_rep	mRNA	1952613	1953401	.	+	.	ID=Os10t0131850-00;Name=Os10t0131850-00;Locus_id=Os10g0131850;Note=Hypothetical gene.;Transcript_evidence=CT835813 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os10t0131850-00;KEGG=Os10t0131850-00
Chr10	irgsp1_rep	five_prime_UTR	1952613	1952614	.	+	.	Parent=Os10t0131850-00
Chr10	irgsp1_rep	CDS	1952615	1952884	.	+	0	Parent=Os10t0131850-00
Chr10	irgsp1_rep	three_prime_UTR	1952885	1953401	.	+	.	Parent=Os10t0131850-00
Chr10	irgsp1_rep	mRNA	1998837	1999759	.	-	.	ID=Os10t0132300-01;Name=Os10t0132300-01;Locus_id=Os10g0132300;Note=Similar to Jasmonate-induced protein.;Transcript_evidence=AK111282 (DDBJ%2C Best hit);ORF_evidence=Q8H8A0 (UniProt);InterPro=Mannose-binding lectin (IPR001229);NIAS_FLcDNA=002-180-H05;Expression=AK111282;TENOR=Os10t0132300-01;KEGG=Os10t0132300-01
Chr10	irgsp1_rep	five_prime_UTR	1999725	1999759	.	-	.	Parent=Os10t0132300-01
Chr10	irgsp1_rep	CDS	1999722	1999724	.	-	0	Parent=Os10t0132300-01
Chr10	irgsp1_rep	CDS	1999416	1999625	.	-	0	Parent=Os10t0132300-01
Chr10	irgsp1_rep	CDS	1999064	1999315	.	-	0	Parent=Os10t0132300-01
Chr10	irgsp1_rep	three_prime_UTR	1998837	1999063	.	-	.	Parent=Os10t0132300-01
Chr10	irgsp1_rep	mRNA	2010999	2011880	.	+	.	ID=Os10t0132400-00;Name=Os10t0132400-00;Locus_id=Os10g0132400;Note=Conserved hypothetical protein.;Transcript_evidence=EU972534 (DDBJ);ORF_evidence=Q8H899 (UniProt);TENOR=Os10t0132400-00
Chr10	irgsp1_rep	CDS	2010999	2011880	.	+	0	Parent=Os10t0132400-00
Chr10	irgsp1_rep	mRNA	2018904	2026611	.	+	.	ID=Os10t0132500-01;Name=Os10t0132500-01;Locus_id=Os10g0132500;Note=Hypothetical conserved gene.;Transcript_evidence=AK102469 (DDBJ%2C Best hit);ORF_evidence=B9G7E0 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);NIAS_FLcDNA=J033094G04;Expression=AK102469;TENOR=Os10t0132500-01;KEGG=Os10t0132500-01
Chr10	irgsp1_rep	five_prime_UTR	2018904	2018954	.	+	.	Parent=Os10t0132500-01
Chr10	irgsp1_rep	CDS	2018955	2019680	.	+	0	Parent=Os10t0132500-01
Chr10	irgsp1_rep	three_prime_UTR	2019681	2019872	.	+	.	Parent=Os10t0132500-01
Chr10	irgsp1_rep	three_prime_UTR	2019981	2020253	.	+	.	Parent=Os10t0132500-01
Chr10	irgsp1_rep	three_prime_UTR	2020692	2020787	.	+	.	Parent=Os10t0132500-01
Chr10	irgsp1_rep	three_prime_UTR	2020931	2021029	.	+	.	Parent=Os10t0132500-01
Chr10	irgsp1_rep	three_prime_UTR	2023671	2026029	.	+	.	Parent=Os10t0132500-01
Chr10	irgsp1_rep	three_prime_UTR	2026151	2026611	.	+	.	Parent=Os10t0132500-01
Chr10	irgsp1_rep	mRNA	2044042	2057059	.	+	.	ID=Os10t0132700-01;Name=Os10t0132700-01;Locus_id=Os10g0132700;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=AK072959 (DDBJ%2C Best hit);ORF_evidence=Q33B89 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);NIAS_FLcDNA=J023150J06;TENOR=Os10t0132700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	2044042	2044500	.	+	.	Parent=Os10t0132700-01
Chr10	irgsp1_rep	five_prime_UTR	2054900	2055251	.	+	.	Parent=Os10t0132700-01
Chr10	irgsp1_rep	CDS	2055252	2056097	.	+	0	Parent=Os10t0132700-01
Chr10	irgsp1_rep	three_prime_UTR	2056098	2057059	.	+	.	Parent=Os10t0132700-01
Chr10	irgsp1_rep	mRNA	2051436	2053215	.	+	.	ID=Os10t0132800-01;Name=Os10t0132800-01;Locus_id=Os10g0132800;Note=Hypothetical protein.;Transcript_evidence=AK064425 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=002-110-C05;TENOR=Os10t0132800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	2051436	2051989	.	+	.	Parent=Os10t0132800-01
Chr10	irgsp1_rep	CDS	2051990	2052214	.	+	0	Parent=Os10t0132800-01
Chr10	irgsp1_rep	three_prime_UTR	2052215	2053215	.	+	.	Parent=Os10t0132800-01
Chr10	irgsp1_rep	mRNA	2055209	2058134	.	-	.	ID=Os10t0132901-00;Name=Os10t0132901-00;Locus_id=Os10g0132901;Note=Hypothetical protein.;Transcript_evidence=tplb0031m13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0132901-00
Chr10	irgsp1_rep	five_prime_UTR	2056197	2058134	.	-	.	Parent=Os10t0132901-00
Chr10	irgsp1_rep	five_prime_UTR	2055771	2056079	.	-	.	Parent=Os10t0132901-00
Chr10	irgsp1_rep	CDS	2055417	2055770	.	-	0	Parent=Os10t0132901-00
Chr10	irgsp1_rep	three_prime_UTR	2055209	2055416	.	-	.	Parent=Os10t0132901-00
Chr10	irgsp1_rep	mRNA	2057710	2058225	.	+	.	ID=Os10t0133000-00;Name=Os10t0133000-00;Locus_id=Os10g0133000;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q33B89 (UniProt);TENOR=Os10t0133000-00
Chr10	irgsp1_rep	CDS	2057710	2058225	.	+	0	Parent=Os10t0133000-00
Chr10	irgsp1_rep	mRNA	2059421	2060817	.	-	.	ID=Os10t0133100-01;Name=Os10t0133100-01;Locus_id=Os10g0133100;Oryzabase Gene Symbol Synonym(s)=OsFbox521%2C Os_F0526;Oryzabase Gene Name Synonym(s)=F-box protein 521;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK071096 (DDBJ%2C Best hit);ORF_evidence=Q8H893 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810);NIAS_FLcDNA=J023080B21;Oryzabase=17290;Expression=AK071096;TENOR=Os10t0133100-01;KEGG=Os10t0133100-01
Chr10	irgsp1_rep	five_prime_UTR	2060774	2060817	.	-	.	Parent=Os10t0133100-01
Chr10	irgsp1_rep	CDS	2059781	2060773	.	-	0	Parent=Os10t0133100-01
Chr10	irgsp1_rep	three_prime_UTR	2059421	2059780	.	-	.	Parent=Os10t0133100-01
Chr10	irgsp1_rep	mRNA	2062346	2063920	.	+	.	ID=Os10t0133133-00;Name=Os10t0133133-00;Locus_id=Os10g0133133;Note=Non-protein coding transcript.;Transcript_evidence=tplb0032e10 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os10t0133133-00
Chr10	irgsp1_rep	exon	2062346	2063920	.	+	.	Parent=Os10t0133133-00
Chr10	irgsp1_rep	mRNA	2062493	2064004	.	-	.	ID=Os10t0133166-00;Name=Os10t0133166-00;Locus_id=Os10g0133166;Note=Conserved hypothetical protein.;Transcript_evidence=AK368639 (DDBJ);ORF_evidence=Q8H892 (UniProt);TENOR=Os10t0133166-00
Chr10	irgsp1_rep	CDS	2062493	2064004	.	-	0	Parent=Os10t0133166-00
Chr10	irgsp1_rep	mRNA	2087427	2091932	.	+	.	ID=Os10t0133500-01;Name=Os10t0133500-01;Locus_id=Os10g0133500;Note=Transferase family protein.;Transcript_evidence=AK066866 (DDBJ%2C Best hit);ORF_evidence=A2Z4T4 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J013088O08;Expression=AK066866;TENOR=Os10t0133500-01;KEGG=Os10t0133500-01
Chr10	irgsp1_rep	five_prime_UTR	2087427	2087470	.	+	.	Parent=Os10t0133500-01
Chr10	irgsp1_rep	CDS	2087471	2087971	.	+	0	Parent=Os10t0133500-01
Chr10	irgsp1_rep	CDS	2090716	2091663	.	+	0	Parent=Os10t0133500-01
Chr10	irgsp1_rep	three_prime_UTR	2091664	2091932	.	+	.	Parent=Os10t0133500-01
Chr10	irgsp1_rep	mRNA	2099188	2099823	.	-	.	ID=Os10t0133600-01;Name=Os10t0133600-01;Locus_id=Os10g0133600;Note=Protein kinase-like domain containing protein.;Transcript_evidence=AK241701 (DDBJ%2C Best hit);ORF_evidence=NP_001064112.2 (RefSeq);NIAS_FLcDNA=J065196F07;TENOR=Os10t0133600-01
Chr10	irgsp1_rep	five_prime_UTR	2099723	2099823	.	-	.	Parent=Os10t0133600-01
Chr10	irgsp1_rep	CDS	2099188	2099722	.	-	0	Parent=Os10t0133600-01
Chr10	irgsp1_rep	mRNA	2107756	2109186	.	-	.	ID=Os10t0133800-00;Name=Os10t0133800-00;Locus_id=Os10g0133800;Note=NB-ARC domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G7E3 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os10t0133800-00
Chr10	irgsp1_rep	CDS	2107756	2109186	.	-	0	Parent=Os10t0133800-00
Chr10	irgsp1_rep	mRNA	2118909	2123738	.	+	.	ID=Os10t0134033-00;Name=Os10t0134033-00;Locus_id=Os10g0134033;Note=Conserved hypothetical protein.;Transcript_evidence=AK367353 (DDBJ);ORF_evidence=A2Z4U0 (UniProt);TENOR=Os10t0134033-00
Chr10	irgsp1_rep	CDS	2118909	2119221	.	+	0	Parent=Os10t0134033-00
Chr10	irgsp1_rep	CDS	2122606	2123738	.	+	2	Parent=Os10t0134033-00
Chr10	irgsp1_rep	mRNA	2144516	2148447	.	-	.	ID=Os10t0134250-01;Name=Os10t0134250-01;Locus_id=Os10g0134250;Note=Hypothetical gene.;Transcript_evidence=AK288770 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090067O18;TENOR=Os10t0134250-01;KEGG=Os10t0134250-01
Chr10	irgsp1_rep	five_prime_UTR	2147222	2148447	.	-	.	Parent=Os10t0134250-01
Chr10	irgsp1_rep	CDS	2146970	2147221	.	-	0	Parent=Os10t0134250-01
Chr10	irgsp1_rep	three_prime_UTR	2144516	2146969	.	-	.	Parent=Os10t0134250-01
Chr10	irgsp1_rep	mRNA	2136277	2136771	.	+	.	ID=Os10t0134266-00;Name=Os10t0134266-00;Locus_id=Os10g0134266;Note=Hypothetical protein.;Transcript_evidence=BT060913 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0134266-00
Chr10	irgsp1_rep	five_prime_UTR	2136277	2136277	.	+	.	Parent=Os10t0134266-00
Chr10	irgsp1_rep	CDS	2136278	2136771	.	+	0	Parent=Os10t0134266-00
Chr10	irgsp1_rep	mRNA	2143418	2148422	.	+	.	ID=Os10t0134500-00;Name=Os10t0134500-00;Locus_id=Os10g0134500;Note=NB-ARC domain containing protein.;Transcript_evidence=BT035626 (DDBJ);ORF_evidence=NP_001064113.1 (RefSeq);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os10t0134500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	2143418	2144169	.	+	0	Parent=Os10t0134500-00
Chr10	irgsp1_rep	CDS	2147672	2148422	.	+	1	Parent=Os10t0134500-00
Chr10	irgsp1_rep	mRNA	2151190	2152784	.	+	.	ID=Os10t0134700-00;Name=Os10t0134700-00;Locus_id=Os10g0134700;Note=Protein kinase-like domain containing protein.;Transcript_evidence=AK368580 (DDBJ);ORF_evidence=NP_001064114.1 (RefSeq);TENOR=Os10t0134700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	2151190	2152716	.	+	0	Parent=Os10t0134700-00
Chr10	irgsp1_rep	three_prime_UTR	2152717	2152784	.	+	.	Parent=Os10t0134700-00
Chr10	irgsp1_rep	mRNA	2157966	2159377	.	+	.	ID=Os10t0134800-00;Name=Os10t0134800-00;Locus_id=Os10g0134800;Note=Conserved hypothetical protein.;Transcript_evidence=AK368462 (DDBJ);ORF_evidence=A2Z4U7 (UniProt);TENOR=Os10t0134800-00
Chr10	irgsp1_rep	CDS	2157966	2158613	.	+	0	Parent=Os10t0134800-00
Chr10	irgsp1_rep	three_prime_UTR	2158614	2159377	.	+	.	Parent=Os10t0134800-00
Chr10	irgsp1_rep	mRNA	2163122	2164565	.	+	.	ID=Os10t0134900-00;Name=Os10t0134900-00;Locus_id=Os10g0134900;Note=NB-ARC domain containing protein.;Transcript_evidence=FP098527 (DDBJ);ORF_evidence=A2Z4U8 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os10t0134900-00
Chr10	irgsp1_rep	five_prime_UTR	2163122	2163122	.	+	.	Parent=Os10t0134900-00
Chr10	irgsp1_rep	CDS	2163123	2164565	.	+	0	Parent=Os10t0134900-00
Chr10	irgsp1_rep	mRNA	2169099	2170542	.	+	.	ID=Os10t0135100-00;Name=Os10t0135100-00;Locus_id=Os10g0135100;Note=NB-ARC domain containing protein.;Transcript_evidence=FP098527 (DDBJ);ORF_evidence=NP_001064116.1 (RefSeq);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os10t0135100-00
Chr10	irgsp1_rep	five_prime_UTR	2169099	2169099	.	+	.	Parent=Os10t0135100-00
Chr10	irgsp1_rep	CDS	2169100	2170542	.	+	0	Parent=Os10t0135100-00
Chr10	irgsp1_rep	mRNA	2178841	2183095	.	-	.	ID=Os10t0135200-01;Name=Os10t0135200-01;Locus_id=Os10g0135200;Note=Ras GTPase family protein.;Transcript_evidence=AK068217 (DDBJ%2C Best hit);ORF_evidence=B4FHR5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: small GTPase mediated signal transduction (GO:0007264),Cellular Component: intracellular (GO:0005622),Molecular Function: ATP binding (GO:0005524),Molecular Function: GTP binding (GO:0005525),Molecular Function: transcription factor binding (GO:0008134);InterPro=Small GTPase superfamily (IPR001806),RNA polymerase sigma factor 54%2C interaction (IPR002078);NIAS_FLcDNA=J013136D19;Expression=AK068217;TENOR=Os10t0135200-01;KEGG=Os10t0135200-01
Chr10	irgsp1_rep	five_prime_UTR	2182877	2183095	.	-	.	Parent=Os10t0135200-01
Chr10	irgsp1_rep	CDS	2182768	2182876	.	-	0	Parent=Os10t0135200-01
Chr10	irgsp1_rep	CDS	2180899	2180990	.	-	2	Parent=Os10t0135200-01
Chr10	irgsp1_rep	CDS	2180668	2180818	.	-	0	Parent=Os10t0135200-01
Chr10	irgsp1_rep	CDS	2180029	2180333	.	-	2	Parent=Os10t0135200-01
Chr10	irgsp1_rep	CDS	2179727	2179780	.	-	0	Parent=Os10t0135200-01
Chr10	irgsp1_rep	CDS	2179508	2179632	.	-	0	Parent=Os10t0135200-01
Chr10	irgsp1_rep	CDS	2179130	2179325	.	-	1	Parent=Os10t0135200-01
Chr10	irgsp1_rep	three_prime_UTR	2178841	2179129	.	-	.	Parent=Os10t0135200-01
Chr10	irgsp1_rep	mRNA	2185064	2189599	.	-	.	ID=Os10t0135250-01;Name=Os10t0135250-01;Locus_id=Os10g0135250;Note=Lipocalin domain containing protein.;Transcript_evidence=AK288867 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090078C05;TENOR=Os10t0135250-01;KEGG=Os10t0135250-01
Chr10	irgsp1_rep	five_prime_UTR	2185890	2189599	.	-	.	Parent=Os10t0135250-01
Chr10	irgsp1_rep	CDS	2185290	2185889	.	-	0	Parent=Os10t0135250-01
Chr10	irgsp1_rep	three_prime_UTR	2185064	2185289	.	-	.	Parent=Os10t0135250-01
Chr10	irgsp1_rep	mRNA	2185292	2188535	.	+	.	ID=Os10t0135300-01;Name=Os10t0135300-01;Locus_id=Os10g0135300;Oryzabase Gene Symbol Synonym(s)=OsFbox522%2C Os_F0408;Oryzabase Gene Name Synonym(s)=F-box protein 522;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK072221 (DDBJ%2C Best hit);ORF_evidence=Q948D1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013166C23;Oryzabase=17291;TENOR=Os10t0135300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	2185292	2185545	.	+	.	Parent=Os10t0135300-01
Chr10	irgsp1_rep	CDS	2185546	2186766	.	+	0	Parent=Os10t0135300-01
Chr10	irgsp1_rep	three_prime_UTR	2186767	2186771	.	+	.	Parent=Os10t0135300-01
Chr10	irgsp1_rep	three_prime_UTR	2187232	2187368	.	+	.	Parent=Os10t0135300-01
Chr10	irgsp1_rep	three_prime_UTR	2188160	2188535	.	+	.	Parent=Os10t0135300-01
Chr10	irgsp1_rep	mRNA	2185320	2188513	.	+	.	ID=Os10t0135300-02;Name=Os10t0135300-02;Locus_id=Os10g0135300;Oryzabase Gene Symbol Synonym(s)=OsFbox522%2C Os_F0408;Oryzabase Gene Name Synonym(s)=F-box protein 522;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK104961 (DDBJ%2C Best hit);ORF_evidence=Q948D1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=001-115-H12;Oryzabase=17291;TENOR=Os10t0135300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	2185320	2185545	.	+	.	Parent=Os10t0135300-02
Chr10	irgsp1_rep	CDS	2185546	2186766	.	+	0	Parent=Os10t0135300-02
Chr10	irgsp1_rep	three_prime_UTR	2186767	2186771	.	+	.	Parent=Os10t0135300-02
Chr10	irgsp1_rep	three_prime_UTR	2187232	2187368	.	+	.	Parent=Os10t0135300-02
Chr10	irgsp1_rep	three_prime_UTR	2188160	2188513	.	+	.	Parent=Os10t0135300-02
Chr10	irgsp1_rep	mRNA	2192056	2194420	.	+	.	ID=Os10t0135400-01;Name=Os10t0135400-01;Locus_id=Os10g0135400;Oryzabase Gene Symbol Synonym(s)=OsFbox523%2C Os_F0629;Oryzabase Gene Name Synonym(s)=F-box protein 523;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK069878 (DDBJ%2C Best hit);ORF_evidence=A3C2B5 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023035G04;Oryzabase=17292;Expression=AK069878;TENOR=Os10t0135400-01;KEGG=Os10t0135400-01
Chr10	irgsp1_rep	five_prime_UTR	2192056	2192168	.	+	.	Parent=Os10t0135400-01
Chr10	irgsp1_rep	CDS	2192169	2193329	.	+	0	Parent=Os10t0135400-01
Chr10	irgsp1_rep	three_prime_UTR	2193330	2193334	.	+	.	Parent=Os10t0135400-01
Chr10	irgsp1_rep	three_prime_UTR	2194055	2194420	.	+	.	Parent=Os10t0135400-01
Chr10	irgsp1_rep	mRNA	2196559	2198967	.	+	.	ID=Os10t0135500-01;Name=Os10t0135500-01;Locus_id=Os10g0135500;Oryzabase Gene Symbol Synonym(s)=OsFbox524%2C Os_F0561;Oryzabase Gene Name Synonym(s)=F-box protein 524;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK099992 (DDBJ%2C Best hit);ORF_evidence=Q33B73 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013132B13;Oryzabase=17293;Expression=AK099992;TENOR=Os10t0135500-01;KEGG=Os10t0135500-01
Chr10	irgsp1_rep	five_prime_UTR	2196559	2196650	.	+	.	Parent=Os10t0135500-01
Chr10	irgsp1_rep	CDS	2196651	2197883	.	+	0	Parent=Os10t0135500-01
Chr10	irgsp1_rep	three_prime_UTR	2197884	2198967	.	+	.	Parent=Os10t0135500-01
Chr10	irgsp1_rep	mRNA	2201512	2206735	.	+	.	ID=Os10t0135600-01;Name=Os10t0135600-01;Locus_id=Os10g0135600;Oryzabase Gene Symbol Synonym(s)=OsPOP20%2C POP20;Oryzabase Gene Name Synonym(s)=Prolyl Oligopeptidase 20%2C PROLYL OLIGOPEPTIDASE 20;Note=Alpha/beta hydrolase family protein.;Transcript_evidence=AK066939 (DDBJ%2C Best hit),AK098985 (DDBJ%2C Best hit);ORF_evidence=B6TXL2 (UniProt);InterPro=Alpha/beta hydrolase fold-1 (IPR000073);NIAS_FLcDNA=J013091N22,J013090G24;Oryzabase=20028;TENOR=Os10t0135600-01
Chr10	irgsp1_rep	five_prime_UTR	2201512	2201764	.	+	.	Parent=Os10t0135600-01
Chr10	irgsp1_rep	CDS	2201765	2201971	.	+	0	Parent=Os10t0135600-01
Chr10	irgsp1_rep	CDS	2202829	2202858	.	+	0	Parent=Os10t0135600-01
Chr10	irgsp1_rep	CDS	2203589	2203715	.	+	0	Parent=Os10t0135600-01
Chr10	irgsp1_rep	CDS	2203797	2203943	.	+	2	Parent=Os10t0135600-01
Chr10	irgsp1_rep	CDS	2204837	2204967	.	+	2	Parent=Os10t0135600-01
Chr10	irgsp1_rep	CDS	2205043	2205180	.	+	0	Parent=Os10t0135600-01
Chr10	irgsp1_rep	CDS	2205595	2205693	.	+	0	Parent=Os10t0135600-01
Chr10	irgsp1_rep	CDS	2206209	2206439	.	+	0	Parent=Os10t0135600-01
Chr10	irgsp1_rep	three_prime_UTR	2206440	2206735	.	+	.	Parent=Os10t0135600-01
Chr10	irgsp1_rep	mRNA	2208448	2209029	.	-	.	ID=Os10t0135650-00;Name=Os10t0135650-00;Locus_id=Os10g0135650;Note=Hypothetical conserved gene.;Transcript_evidence=CT835795 (DDBJ%2C Best hit);ORF_evidence=Q67TS5 (UniProt);TENOR=Os10t0135650-00;KEGG=Os10t0135650-00
Chr10	irgsp1_rep	five_prime_UTR	2208754	2209029	.	-	.	Parent=Os10t0135650-00
Chr10	irgsp1_rep	CDS	2208502	2208753	.	-	0	Parent=Os10t0135650-00
Chr10	irgsp1_rep	three_prime_UTR	2208448	2208501	.	-	.	Parent=Os10t0135650-00
Chr10	irgsp1_rep	mRNA	2211559	2212224	.	-	.	ID=Os10t0135700-01;Name=Os10t0135700-01;Locus_id=Os10g0135700;Note=Hypothetical gene.;Transcript_evidence=AK119991 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-184-G07;Expression=AK119991;TENOR=Os10t0135700-01;KEGG=Os10t0135700-01
Chr10	irgsp1_rep	CDS	2211985	2212224	.	-	0	Parent=Os10t0135700-01
Chr10	irgsp1_rep	three_prime_UTR	2211559	2211984	.	-	.	Parent=Os10t0135700-01
Chr10	irgsp1_rep	mRNA	2220029	2222124	.	+	.	ID=Os10t0135833-00;Name=Os10t0135833-00;Locus_id=Os10g0135833;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0053b10 (Wheat FLcDNA);ORF_evidence=Q33B69 (UniProt);TENOR=Os10t0135833-00
Chr10	irgsp1_rep	five_prime_UTR	2220029	2220735	.	+	.	Parent=Os10t0135833-00
Chr10	irgsp1_rep	CDS	2220736	2222124	.	+	0	Parent=Os10t0135833-00
Chr10	irgsp1_rep	mRNA	2226411	2231401	.	-	.	ID=Os10t0136100-01;Name=Os10t0136100-01;Locus_id=Os10g0136100;Note=Similar to Hv1LRR2.;Transcript_evidence=AK073424 (DDBJ%2C Best hit);ORF_evidence=Q7XH20 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J033045O13;Oryzabase=14962;Expression=AK073424;TENOR=Os10t0136100-01;KEGG=Os10t0136100-01
Chr10	irgsp1_rep	five_prime_UTR	2231219	2231401	.	-	.	Parent=Os10t0136100-01
Chr10	irgsp1_rep	five_prime_UTR	2230134	2230199	.	-	.	Parent=Os10t0136100-01
Chr10	irgsp1_rep	CDS	2227367	2230133	.	-	0	Parent=Os10t0136100-01
Chr10	irgsp1_rep	CDS	2226816	2226826	.	-	2	Parent=Os10t0136100-01
Chr10	irgsp1_rep	three_prime_UTR	2226411	2226815	.	-	.	Parent=Os10t0136100-01
Chr10	irgsp1_rep	mRNA	2227222	2231360	.	-	.	ID=Os10t0136100-02;Name=Os10t0136100-02;Locus_id=Os10g0136100;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=AK121168 (DDBJ%2C Best hit);ORF_evidence=Q7XH20 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J023080L03;Oryzabase=14962;Expression=AK121168;TENOR=Os10t0136100-02;KEGG=Os10t0136100-02
Chr10	irgsp1_rep	five_prime_UTR	2231219	2231360	.	-	.	Parent=Os10t0136100-02
Chr10	irgsp1_rep	five_prime_UTR	2230134	2230199	.	-	.	Parent=Os10t0136100-02
Chr10	irgsp1_rep	CDS	2227350	2230133	.	-	0	Parent=Os10t0136100-02
Chr10	irgsp1_rep	three_prime_UTR	2227222	2227349	.	-	.	Parent=Os10t0136100-02
Chr10	irgsp1_rep	mRNA	2239218	2242139	.	-	.	ID=Os10t0136150-00;Name=Os10t0136150-00;Locus_id=Os10g0136150;Note=Similar to F-box domain containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10A57 (UniProt);TENOR=Os10t0136150-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	2241068	2242139	.	-	0	Parent=Os10t0136150-00
Chr10	irgsp1_rep	CDS	2240270	2240893	.	-	2	Parent=Os10t0136150-00
Chr10	irgsp1_rep	CDS	2239218	2239270	.	-	2	Parent=Os10t0136150-00
Chr10	irgsp1_rep	mRNA	2243002	2245973	.	-	.	ID=Os10t0136200-01;Name=Os10t0136200-01;Locus_id=Os10g0136200;Oryzabase Gene Symbol Synonym(s)=OsFbox525%2C Os_F0176;Oryzabase Gene Name Synonym(s)=F-box protein 525;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK106351 (DDBJ%2C Best hit);ORF_evidence=Q10A57 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-101-H11;Oryzabase=17294;Expression=AK106351;TENOR=Os10t0136200-01;KEGG=Os10t0136200-01
Chr10	irgsp1_rep	five_prime_UTR	2245910	2245973	.	-	.	Parent=Os10t0136200-01
Chr10	irgsp1_rep	CDS	2244730	2245909	.	-	0	Parent=Os10t0136200-01
Chr10	irgsp1_rep	CDS	2243926	2243954	.	-	2	Parent=Os10t0136200-01
Chr10	irgsp1_rep	three_prime_UTR	2243883	2243925	.	-	.	Parent=Os10t0136200-01
Chr10	irgsp1_rep	three_prime_UTR	2243002	2243409	.	-	.	Parent=Os10t0136200-01
Chr10	irgsp1_rep	mRNA	2243570	2245899	.	-	.	ID=Os10t0136200-02;Name=Os10t0136200-02;Locus_id=Os10g0136200;Oryzabase Gene Symbol Synonym(s)=OsFbox525%2C Os_F0176;Oryzabase Gene Name Synonym(s)=F-box protein 525;Note=Similar to F-box domain containing protein%2C expressed.;Transcript_evidence=AK069758 (DDBJ%2C Best hit);ORF_evidence=Q10A57 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023033H12;Oryzabase=17294;Expression=AK069758;TENOR=Os10t0136200-02;KEGG=Os10t0136200-02
Chr10	irgsp1_rep	five_prime_UTR	2245889	2245899	.	-	.	Parent=Os10t0136200-02
Chr10	irgsp1_rep	CDS	2244730	2245888	.	-	0	Parent=Os10t0136200-02
Chr10	irgsp1_rep	CDS	2243926	2243954	.	-	2	Parent=Os10t0136200-02
Chr10	irgsp1_rep	three_prime_UTR	2243570	2243925	.	-	.	Parent=Os10t0136200-02
Chr10	irgsp1_rep	mRNA	2249407	2252236	.	-	.	ID=Os10t0136400-00;Name=Os10t0136400-00;Locus_id=Os10g0136400;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=AK365697 (DDBJ);ORF_evidence=Q33B66 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Gnk2-homologous domain (IPR002902),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os10t0136400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	2252232	2252236	.	-	.	Parent=Os10t0136400-00
Chr10	irgsp1_rep	CDS	2251436	2252231	.	-	0	Parent=Os10t0136400-00
Chr10	irgsp1_rep	CDS	2250756	2251045	.	-	2	Parent=Os10t0136400-00
Chr10	irgsp1_rep	CDS	2250385	2250595	.	-	0	Parent=Os10t0136400-00
Chr10	irgsp1_rep	CDS	2250022	2250259	.	-	2	Parent=Os10t0136400-00
Chr10	irgsp1_rep	CDS	2249787	2249937	.	-	1	Parent=Os10t0136400-00
Chr10	irgsp1_rep	CDS	2249407	2249700	.	-	0	Parent=Os10t0136400-00
Chr10	irgsp1_rep	mRNA	2252781	2257370	.	+	.	ID=Os10t0136450-01;Name=Os10t0136450-01;Locus_id=Os10g0136450;Note=Conserved hypothetical protein.;Transcript_evidence=AK242848 (DDBJ%2C Best hit);ORF_evidence=NP_001176017.1 (RefSeq);NIAS_FLcDNA=J090072L17;TENOR=Os10t0136450-01;KEGG=Os10t0136450-01
Chr10	irgsp1_rep	five_prime_UTR	2252781	2256611	.	+	.	Parent=Os10t0136450-01
Chr10	irgsp1_rep	CDS	2256612	2256860	.	+	0	Parent=Os10t0136450-01
Chr10	irgsp1_rep	three_prime_UTR	2256861	2257370	.	+	.	Parent=Os10t0136450-01
Chr10	irgsp1_rep	mRNA	2257492	2262619	.	+	.	ID=Os10t0136500-01;Name=Os10t0136500-01;Locus_id=Os10g0136500;Oryzabase Gene Name Synonym(s)=receptor-like kinase;Note=Similar to SRK5 protein (Fragment).;Transcript_evidence=AK120072 (DDBJ%2C Best hit);ORF_evidence=Q33B66 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Gnk2-homologous domain (IPR002902),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013006F14;Oryzabase=21881;Expression=AK120072;TENOR=Os10t0136500-01;KEGG=Os10t0136500-01
Chr10	irgsp1_rep	five_prime_UTR	2257492	2257520	.	+	.	Parent=Os10t0136500-01
Chr10	irgsp1_rep	CDS	2257521	2258292	.	+	0	Parent=Os10t0136500-01
Chr10	irgsp1_rep	CDS	2260187	2260288	.	+	2	Parent=Os10t0136500-01
Chr10	irgsp1_rep	CDS	2260526	2260707	.	+	2	Parent=Os10t0136500-01
Chr10	irgsp1_rep	CDS	2261201	2261411	.	+	0	Parent=Os10t0136500-01
Chr10	irgsp1_rep	CDS	2261517	2261757	.	+	2	Parent=Os10t0136500-01
Chr10	irgsp1_rep	CDS	2261852	2262002	.	+	1	Parent=Os10t0136500-01
Chr10	irgsp1_rep	CDS	2262107	2262415	.	+	0	Parent=Os10t0136500-01
Chr10	irgsp1_rep	three_prime_UTR	2262416	2262619	.	+	.	Parent=Os10t0136500-01
Chr10	irgsp1_rep	mRNA	2257622	2262486	.	-	.	ID=Os10t0136625-00;Name=Os10t0136625-00;Locus_id=Os10g0136625;Note=Hypothetical protein.;Transcript_evidence=tplb0040j01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0136625-00
Chr10	irgsp1_rep	five_prime_UTR	2262105	2262486	.	-	.	Parent=Os10t0136625-00
Chr10	irgsp1_rep	five_prime_UTR	2261852	2261993	.	-	.	Parent=Os10t0136625-00
Chr10	irgsp1_rep	five_prime_UTR	2261502	2261757	.	-	.	Parent=Os10t0136625-00
Chr10	irgsp1_rep	five_prime_UTR	2261185	2261397	.	-	.	Parent=Os10t0136625-00
Chr10	irgsp1_rep	five_prime_UTR	2260432	2260688	.	-	.	Parent=Os10t0136625-00
Chr10	irgsp1_rep	five_prime_UTR	2258259	2258298	.	-	.	Parent=Os10t0136625-00
Chr10	irgsp1_rep	CDS	2257622	2258258	.	-	0	Parent=Os10t0136625-00
Chr10	irgsp1_rep	mRNA	2283674	2294325	.	+	.	ID=Os10t0136800-00;Name=Os10t0136800-00;Locus_id=Os10g0136800;Note=Hypothetical gene.;Transcript_evidence=CT835726 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os10t0136800-00;KEGG=Os10t0136800-00
Chr10	irgsp1_rep	five_prime_UTR	2283674	2283675	.	+	.	Parent=Os10t0136800-00
Chr10	irgsp1_rep	CDS	2283676	2283946	.	+	0	Parent=Os10t0136800-00
Chr10	irgsp1_rep	CDS	2294072	2294268	.	+	2	Parent=Os10t0136800-00
Chr10	irgsp1_rep	three_prime_UTR	2294269	2294325	.	+	.	Parent=Os10t0136800-00
Chr10	irgsp1_rep	mRNA	2291857	2292441	.	-	.	ID=Os10t0136900-00;Name=Os10t0136900-00;Locus_id=Os10g0136900;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q9AYH1 (UniProt);TENOR=Os10t0136900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	2291857	2292441	.	-	0	Parent=Os10t0136900-00
Chr10	irgsp1_rep	mRNA	2291931	2293020	.	+	.	ID=Os10t0136950-00;Name=Os10t0136950-00;Locus_id=Os10g0136950;Note=Hypothetical protein.;Transcript_evidence=tplb0061d17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0136950-00
Chr10	irgsp1_rep	five_prime_UTR	2291931	2292330	.	+	.	Parent=Os10t0136950-00
Chr10	irgsp1_rep	CDS	2292331	2293002	.	+	0	Parent=Os10t0136950-00
Chr10	irgsp1_rep	three_prime_UTR	2293003	2293020	.	+	.	Parent=Os10t0136950-00
Chr10	irgsp1_rep	mRNA	2296706	2300715	.	-	.	ID=Os10t0137000-01;Name=Os10t0137000-01;Locus_id=Os10g0137000;Oryzabase Gene Symbol Synonym(s)=OsFbox527%2C Os_F0059;Oryzabase Gene Name Synonym(s)=F-box protein 527;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK119430 (DDBJ%2C Best hit);ORF_evidence=Q8W2Q0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=001-133-A03;Oryzabase=17296;Expression=AK119430;TENOR=Os10t0137000-01;KEGG=Os10t0137000-01
Chr10	irgsp1_rep	five_prime_UTR	2300572	2300715	.	-	.	Parent=Os10t0137000-01
Chr10	irgsp1_rep	CDS	2299461	2300571	.	-	0	Parent=Os10t0137000-01
Chr10	irgsp1_rep	CDS	2298241	2298248	.	-	2	Parent=Os10t0137000-01
Chr10	irgsp1_rep	three_prime_UTR	2296706	2298240	.	-	.	Parent=Os10t0137000-01
Chr10	irgsp1_rep	mRNA	2312880	2313661	.	+	.	ID=Os10t0137100-01;Name=Os10t0137100-01;Locus_id=Os10g0137100;Note=Conserved hypothetical protein.;Transcript_evidence=AK111323 (DDBJ%2C Best hit);ORF_evidence=B9G7F8 (UniProt);NIAS_FLcDNA=002-181-D07;TENOR=Os10t0137100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	2312880	2313026	.	+	.	Parent=Os10t0137100-01
Chr10	irgsp1_rep	CDS	2313027	2313275	.	+	0	Parent=Os10t0137100-01
Chr10	irgsp1_rep	three_prime_UTR	2313276	2313661	.	+	.	Parent=Os10t0137100-01
Chr10	irgsp1_rep	mRNA	2317204	2317845	.	+	.	ID=Os10t0137300-00;Name=Os10t0137300-00;Locus_id=Os10g0137300;Note=Similar to BLN1-1.;Transcript_evidence=CT835763 (DDBJ%2C Best hit);ORF_evidence=NP_001064130.1 (RefSeq);TENOR=Os10t0137300-00;KEGG=Os10t0137300-00
Chr10	irgsp1_rep	five_prime_UTR	2317204	2317292	.	+	.	Parent=Os10t0137300-00
Chr10	irgsp1_rep	CDS	2317293	2317404	.	+	0	Parent=Os10t0137300-00
Chr10	irgsp1_rep	CDS	2317541	2317577	.	+	2	Parent=Os10t0137300-00
Chr10	irgsp1_rep	CDS	2317589	2317595	.	+	1	Parent=Os10t0137300-00
Chr10	irgsp1_rep	three_prime_UTR	2317596	2317845	.	+	.	Parent=Os10t0137300-00
Chr10	irgsp1_rep	mRNA	2337370	2340164	.	-	.	ID=Os10t0137700-01;Name=Os10t0137700-01;Locus_id=Os10g0137700;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK103313 (DDBJ%2C Best hit);ORF_evidence=B8BFN1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033125G21;Expression=AK103313;TENOR=Os10t0137700-01;KEGG=Os10t0137700-01
Chr10	irgsp1_rep	five_prime_UTR	2340128	2340164	.	-	.	Parent=Os10t0137700-01
Chr10	irgsp1_rep	CDS	2338969	2340127	.	-	0	Parent=Os10t0137700-01
Chr10	irgsp1_rep	CDS	2337667	2337683	.	-	2	Parent=Os10t0137700-01
Chr10	irgsp1_rep	three_prime_UTR	2337370	2337666	.	-	.	Parent=Os10t0137700-01
Chr10	irgsp1_rep	mRNA	2350665	2354534	.	-	.	ID=Os10t0138000-00;Name=Os10t0138000-00;Locus_id=Os10g0138000;Oryzabase Gene Symbol Synonym(s)=OsFbox528%2C Os_F0224;Oryzabase Gene Name Synonym(s)=F-box protein 528;Note=Hypothetical conserved gene.;Transcript_evidence=tplb0027g21 (Wheat FLcDNA);ORF_evidence=B9G7G0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17297;TENOR=Os10t0138000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	2354506	2354534	.	-	.	Parent=Os10t0138000-00
Chr10	irgsp1_rep	CDS	2353990	2354505	.	-	0	Parent=Os10t0138000-00
Chr10	irgsp1_rep	three_prime_UTR	2353354	2353989	.	-	.	Parent=Os10t0138000-00
Chr10	irgsp1_rep	three_prime_UTR	2352394	2352528	.	-	.	Parent=Os10t0138000-00
Chr10	irgsp1_rep	three_prime_UTR	2350665	2350960	.	-	.	Parent=Os10t0138000-00
Chr10	irgsp1_rep	mRNA	2358853	2368717	.	+	.	ID=Os10t0138100-01;Name=Os10t0138100-01;Locus_id=Os10g0138100;Oryzabase Gene Symbol Synonym(s)=AO%2C OsAO2%2C AO2;Oryzabase Gene Name Synonym(s)=aldehyde oxidase%2C aldehyde oxidase 2;Note=Similar to Aldehyde oxidase-2.;Transcript_evidence=AK121557 (DDBJ%2C Best hit);ORF_evidence=O23888 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: metal ion binding (GO:0046872),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: iron-sulfur cluster binding (GO:0051536),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=Aldehyde oxidase/xanthine dehydrogenase%2C a/b hammerhead (IPR000674),Ferredoxin (IPR001041),Molybdopterin dehydrogenase%2C FAD-binding (IPR002346),[2Fe-2S]-binding (IPR002888),CO dehydrogenase flavoprotein%2C C-terminal (IPR005107),2Fe-2S ferredoxin%2C iron-sulphur binding site (IPR006058),Aldehyde oxidase/xanthine dehydrogenase%2C molybdopterin binding (IPR008274),Beta-grasp fold%2C ferredoxin-type (IPR012675),FAD-binding%2C type 2 (IPR016166),CO dehydrogenase flavoprotein-like%2C FAD-binding%2C subdomain 2 (IPR016169),Aldehyde oxidase/xanthine dehydrogenase (IPR016208);NIAS_FLcDNA=J033033J23;Oryzabase=20886;TENOR=Os10t0138100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	2358853	2358940	.	+	.	Parent=Os10t0138100-01
Chr10	irgsp1_rep	CDS	2358941	2359076	.	+	0	Parent=Os10t0138100-01
Chr10	irgsp1_rep	CDS	2361757	2363427	.	+	2	Parent=Os10t0138100-01
Chr10	irgsp1_rep	CDS	2363627	2363889	.	+	2	Parent=Os10t0138100-01
Chr10	irgsp1_rep	CDS	2364018	2364227	.	+	0	Parent=Os10t0138100-01
Chr10	irgsp1_rep	CDS	2364427	2364645	.	+	0	Parent=Os10t0138100-01
Chr10	irgsp1_rep	CDS	2365029	2365991	.	+	0	Parent=Os10t0138100-01
Chr10	irgsp1_rep	CDS	2366270	2366365	.	+	0	Parent=Os10t0138100-01
Chr10	irgsp1_rep	CDS	2366473	2366571	.	+	0	Parent=Os10t0138100-01
Chr10	irgsp1_rep	CDS	2366944	2367133	.	+	0	Parent=Os10t0138100-01
Chr10	irgsp1_rep	CDS	2367585	2367814	.	+	2	Parent=Os10t0138100-01
Chr10	irgsp1_rep	three_prime_UTR	2367815	2368717	.	+	.	Parent=Os10t0138100-01
Chr10	irgsp1_rep	mRNA	2364614	2368717	.	+	.	ID=Os10t0138100-02;Name=Os10t0138100-02;Locus_id=Os10g0138100;Oryzabase Gene Symbol Synonym(s)=AO%2C OsAO2%2C AO2;Oryzabase Gene Name Synonym(s)=aldehyde oxidase%2C aldehyde oxidase 2;Note=Similar to aldehyde oxidase-2.;Transcript_evidence=AK103597 (DDBJ%2C Best hit);ORF_evidence=O23888 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldehyde oxidase/xanthine dehydrogenase%2C molybdopterin binding (IPR008274);NIAS_FLcDNA=J033133E15;Oryzabase=20886;Expression=AK103597;TENOR=Os10t0138100-02;KEGG=Os10t0138100-02 (EC:1.2.3.7)
Chr10	irgsp1_rep	five_prime_UTR	2364614	2364615	.	+	.	Parent=Os10t0138100-02
Chr10	irgsp1_rep	CDS	2364616	2364645	.	+	0	Parent=Os10t0138100-02
Chr10	irgsp1_rep	CDS	2365029	2365991	.	+	0	Parent=Os10t0138100-02
Chr10	irgsp1_rep	CDS	2366270	2366365	.	+	0	Parent=Os10t0138100-02
Chr10	irgsp1_rep	CDS	2366473	2366571	.	+	0	Parent=Os10t0138100-02
Chr10	irgsp1_rep	CDS	2366944	2367133	.	+	0	Parent=Os10t0138100-02
Chr10	irgsp1_rep	CDS	2367585	2367814	.	+	2	Parent=Os10t0138100-02
Chr10	irgsp1_rep	three_prime_UTR	2367815	2368717	.	+	.	Parent=Os10t0138100-02
Chr10	irgsp1_rep	mRNA	2362518	2363430	.	-	.	ID=Os10t0138150-00;Name=Os10t0138150-00;Locus_id=Os10g0138150;Note=Hypothetical gene.;Transcript_evidence=EU944577 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0138150-00;KEGG=Os10t0138150-00
Chr10	irgsp1_rep	five_prime_UTR	2363315	2363430	.	-	.	Parent=Os10t0138150-00
Chr10	irgsp1_rep	five_prime_UTR	2363048	2363195	.	-	.	Parent=Os10t0138150-00
Chr10	irgsp1_rep	CDS	2362628	2363047	.	-	0	Parent=Os10t0138150-00
Chr10	irgsp1_rep	three_prime_UTR	2362518	2362627	.	-	.	Parent=Os10t0138150-00
Chr10	irgsp1_rep	mRNA	2374615	2378634	.	+	.	ID=Os10t0138300-01;Name=Os10t0138300-01;Locus_id=Os10g0138300;Note=Conserved hypothetical protein.;Transcript_evidence=AK241966 (DDBJ%2C Best hit);ORF_evidence=NP_001064134.1 (RefSeq);NIAS_FLcDNA=J075095H05;TENOR=Os10t0138300-01;KEGG=Os10t0138300-01
Chr10	irgsp1_rep	five_prime_UTR	2374615	2374658	.	+	.	Parent=Os10t0138300-01
Chr10	irgsp1_rep	CDS	2374659	2375931	.	+	0	Parent=Os10t0138300-01
Chr10	irgsp1_rep	CDS	2377294	2377410	.	+	2	Parent=Os10t0138300-01
Chr10	irgsp1_rep	CDS	2377511	2377551	.	+	2	Parent=Os10t0138300-01
Chr10	irgsp1_rep	three_prime_UTR	2377552	2377584	.	+	.	Parent=Os10t0138300-01
Chr10	irgsp1_rep	three_prime_UTR	2378368	2378634	.	+	.	Parent=Os10t0138300-01
Chr10	irgsp1_rep	mRNA	2386145	2387780	.	+	.	ID=Os10t0138600-01;Name=Os10t0138600-01;Locus_id=Os10g0138600;Oryzabase Gene Symbol Synonym(s)=OsFbox529%2C Os_F0667%2C OsEnS-132;Oryzabase Gene Name Synonym(s)=F-box protein 529%2C endosperm-specific gene 132;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK107242 (DDBJ%2C Best hit);ORF_evidence=Q8VWH8 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-125-F06;Oryzabase=17298;Expression=AK107242;TENOR=Os10t0138600-01;KEGG=Os10t0138600-01
Chr10	irgsp1_rep	five_prime_UTR	2386145	2386227	.	+	.	Parent=Os10t0138600-01
Chr10	irgsp1_rep	CDS	2386228	2387664	.	+	0	Parent=Os10t0138600-01
Chr10	irgsp1_rep	three_prime_UTR	2387665	2387780	.	+	.	Parent=Os10t0138600-01
Chr10	irgsp1_rep	mRNA	2422073	2426565	.	-	.	ID=Os10t0139300-01;Name=Os10t0139300-01;Locus_id=Os10g0139300;RAP-DB Gene Symbol Synonym(s)=OsFBX365%2C PEG2;RAP-DB Gene Name Synonym(s)=Paternally Expressed Gene2;Oryzabase Gene Symbol Synonym(s)=OsFbox530%2C Fbox530%2C Os_F0198%2C OsFBX365%2C FBX365%2C PEG2;Oryzabase Gene Name Synonym(s)=F-box protein 530%2C Paternally Expressed Gene 2;Note=F-box domain containing protein%2C Regulation of seed development;Transcript_evidence=AK107379;ORF_evidence=Q33B55;GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain (IPR001810);NIAS_FLcDNA=002-127-B12;Manual Curation=April 30%2C 2017;Literature_PMID=28295376;Oryzabase=17299;Expression=AK107379;TENOR=Os10t0139300-01;KEGG=Os10t0139300-01
Chr10	irgsp1_rep	five_prime_UTR	2426496	2426565	.	-	.	Parent=Os10t0139300-01
Chr10	irgsp1_rep	CDS	2425244	2426495	.	-	0	Parent=Os10t0139300-01
Chr10	irgsp1_rep	CDS	2424503	2424528	.	-	2	Parent=Os10t0139300-01
Chr10	irgsp1_rep	three_prime_UTR	2424482	2424502	.	-	.	Parent=Os10t0139300-01
Chr10	irgsp1_rep	three_prime_UTR	2422073	2422268	.	-	.	Parent=Os10t0139300-01
Chr10	irgsp1_rep	mRNA	2438829	2440205	.	+	.	ID=Os10t0139500-01;Name=Os10t0139500-01;Locus_id=Os10g0139500;Note=Similar to F-box domain containing protein%2C expressed.;Transcript_evidence=AK063615 (DDBJ%2C Best hit);ORF_evidence=Q7XGZ6 (UniProt);NIAS_FLcDNA=001-118-D09;Oryzabase=17461;Expression=AK063615;TENOR=Os10t0139500-01;KEGG=Os10t0139500-01
Chr10	irgsp1_rep	CDS	2438829	2439071	.	+	0	Parent=Os10t0139500-01
Chr10	irgsp1_rep	three_prime_UTR	2439072	2439310	.	+	.	Parent=Os10t0139500-01
Chr10	irgsp1_rep	three_prime_UTR	2439891	2440205	.	+	.	Parent=Os10t0139500-01
Chr10	irgsp1_rep	mRNA	2445678	2447981	.	+	.	ID=Os10t0139600-01;Name=Os10t0139600-01;Locus_id=Os10g0139600;Note=F-box domain%2C Skp2-like domain containing protein.;Transcript_evidence=AK069016 (DDBJ%2C Best hit);ORF_evidence=A2Z4Y6 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023002C03;TENOR=Os10t0139600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	2445678	2445715	.	+	.	Parent=Os10t0139600-01
Chr10	irgsp1_rep	CDS	2445716	2446228	.	+	0	Parent=Os10t0139600-01
Chr10	irgsp1_rep	three_prime_UTR	2446229	2446810	.	+	.	Parent=Os10t0139600-01
Chr10	irgsp1_rep	three_prime_UTR	2447593	2447981	.	+	.	Parent=Os10t0139600-01
Chr10	irgsp1_rep	mRNA	2453934	2455722	.	-	.	ID=Os10t0139700-01;Name=Os10t0139700-01;Locus_id=Os10g0139700;Note=CytoChrome P450 family protein.;Transcript_evidence=AK067458 (DDBJ%2C Best hit);ORF_evidence=B6UDW1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J013107H17;Expression=AK067458;TENOR=Os10t0139700-01;KEGG=Os10t0139700-01
Chr10	irgsp1_rep	five_prime_UTR	2455666	2455722	.	-	.	Parent=Os10t0139700-01
Chr10	irgsp1_rep	CDS	2454073	2455665	.	-	0	Parent=Os10t0139700-01
Chr10	irgsp1_rep	three_prime_UTR	2453934	2454072	.	-	.	Parent=Os10t0139700-01
Chr10	irgsp1_rep	mRNA	2477209	2489739	.	+	.	ID=Os10t0140200-01;Name=Os10t0140200-01;Locus_id=Os10g0140200;Note=Glycoside hydrolase%2C family 38 domain containing protein.;Transcript_evidence=AK069822 (DDBJ%2C Best hit);ORF_evidence=NP_201416.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: mannose metabolic process (GO:0006013),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: alpha-mannosidase activity (GO:0004559),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: mannosidase activity (GO:0015923),Molecular Function: carbohydrate binding (GO:0030246),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 38%2C core (IPR000602),Glycoside hydrolase-type carbohydrate-binding (IPR011013),Glycoside hydrolase/deacetylase%2C beta/alpha-barrel (IPR011330),Glycosyl hydrolases 38%2C C-terminal (IPR011682),Glycosyl hydrolase%2C family 13%2C all-beta (IPR013780),Glycoside hydrolase%2C family 38%2C central domain (IPR015341);NIAS_FLcDNA=J023027F12;Expression=AK069822;TENOR=Os10t0140200-01;KEGG=Os10t0140200-01 (EC:3.2.1.24)
Chr10	irgsp1_rep	five_prime_UTR	2477209	2477439	.	+	.	Parent=Os10t0140200-01
Chr10	irgsp1_rep	CDS	2477440	2477643	.	+	0	Parent=Os10t0140200-01
Chr10	irgsp1_rep	CDS	2477805	2477888	.	+	0	Parent=Os10t0140200-01
Chr10	irgsp1_rep	CDS	2480104	2480192	.	+	0	Parent=Os10t0140200-01
Chr10	irgsp1_rep	CDS	2480269	2480443	.	+	1	Parent=Os10t0140200-01
Chr10	irgsp1_rep	CDS	2480755	2480874	.	+	0	Parent=Os10t0140200-01
Chr10	irgsp1_rep	CDS	2480995	2481078	.	+	0	Parent=Os10t0140200-01
Chr10	irgsp1_rep	CDS	2481162	2481233	.	+	0	Parent=Os10t0140200-01
Chr10	irgsp1_rep	CDS	2481333	2481446	.	+	0	Parent=Os10t0140200-01
Chr10	irgsp1_rep	CDS	2481843	2481943	.	+	0	Parent=Os10t0140200-01
Chr10	irgsp1_rep	CDS	2482015	2482108	.	+	1	Parent=Os10t0140200-01
Chr10	irgsp1_rep	CDS	2482256	2482423	.	+	0	Parent=Os10t0140200-01
Chr10	irgsp1_rep	CDS	2482530	2482607	.	+	0	Parent=Os10t0140200-01
Chr10	irgsp1_rep	CDS	2482899	2482964	.	+	0	Parent=Os10t0140200-01
Chr10	irgsp1_rep	CDS	2483043	2483099	.	+	0	Parent=Os10t0140200-01
Chr10	irgsp1_rep	CDS	2483344	2483563	.	+	0	Parent=Os10t0140200-01
Chr10	irgsp1_rep	CDS	2483858	2483994	.	+	2	Parent=Os10t0140200-01
Chr10	irgsp1_rep	CDS	2485736	2485804	.	+	0	Parent=Os10t0140200-01
Chr10	irgsp1_rep	CDS	2485890	2485949	.	+	0	Parent=Os10t0140200-01
Chr10	irgsp1_rep	CDS	2486370	2486441	.	+	0	Parent=Os10t0140200-01
Chr10	irgsp1_rep	CDS	2486521	2486568	.	+	0	Parent=Os10t0140200-01
Chr10	irgsp1_rep	CDS	2486672	2486797	.	+	0	Parent=Os10t0140200-01
Chr10	irgsp1_rep	CDS	2486973	2487038	.	+	0	Parent=Os10t0140200-01
Chr10	irgsp1_rep	CDS	2487499	2487611	.	+	0	Parent=Os10t0140200-01
Chr10	irgsp1_rep	CDS	2488339	2488423	.	+	1	Parent=Os10t0140200-01
Chr10	irgsp1_rep	CDS	2488531	2488641	.	+	0	Parent=Os10t0140200-01
Chr10	irgsp1_rep	CDS	2488876	2488971	.	+	0	Parent=Os10t0140200-01
Chr10	irgsp1_rep	CDS	2489058	2489105	.	+	0	Parent=Os10t0140200-01
Chr10	irgsp1_rep	CDS	2489181	2489249	.	+	0	Parent=Os10t0140200-01
Chr10	irgsp1_rep	CDS	2489384	2489572	.	+	0	Parent=Os10t0140200-01
Chr10	irgsp1_rep	three_prime_UTR	2489573	2489739	.	+	.	Parent=Os10t0140200-01
Chr10	irgsp1_rep	mRNA	2492588	2496864	.	+	.	ID=Os10t0140300-01;Name=Os10t0140300-01;Locus_id=Os10g0140300;CGSNL Gene Symbol=GELP102;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 102;Oryzabase Gene Symbol Synonym(s)=OsGELP102;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 102;Note=Esterase%2C SGNH hydrolase-type domain containing protein.;Transcript_evidence=AK100609 (DDBJ%2C Best hit);ORF_evidence=B8BFP7 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: lipase activity (GO:0016298),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087),Lipase%2C GDSL%2C active site (IPR008265),Esterase%2C SGNH hydrolase-type (IPR013830),Esterase%2C SGNH hydrolase-type%2C subgroup (IPR013831);NIAS_FLcDNA=J023107L07;Oryzabase=11052;Expression=AK100609;TENOR=Os10t0140300-01;KEGG=Os10t0140300-01
Chr10	irgsp1_rep	five_prime_UTR	2492588	2492618	.	+	.	Parent=Os10t0140300-01
Chr10	irgsp1_rep	CDS	2492619	2492889	.	+	0	Parent=Os10t0140300-01
Chr10	irgsp1_rep	CDS	2495502	2496092	.	+	2	Parent=Os10t0140300-01
Chr10	irgsp1_rep	CDS	2496459	2496646	.	+	2	Parent=Os10t0140300-01
Chr10	irgsp1_rep	three_prime_UTR	2496647	2496864	.	+	.	Parent=Os10t0140300-01
Chr10	irgsp1_rep	mRNA	2507002	2508368	.	+	.	ID=Os10t0140700-00;Name=Os10t0140700-00;Locus_id=Os10g0140700;Note=Hypothetical conserved gene.;Transcript_evidence=CT835759 (DDBJ%2C Best hit);ORF_evidence=A2Z4Z4 (UniProt);TENOR=Os10t0140700-00;KEGG=Os10t0140700-00
Chr10	irgsp1_rep	five_prime_UTR	2507002	2507361	.	+	.	Parent=Os10t0140700-00
Chr10	irgsp1_rep	CDS	2507362	2507583	.	+	0	Parent=Os10t0140700-00
Chr10	irgsp1_rep	CDS	2507590	2507943	.	+	0	Parent=Os10t0140700-00
Chr10	irgsp1_rep	three_prime_UTR	2507944	2508368	.	+	.	Parent=Os10t0140700-00
Chr10	irgsp1_rep	mRNA	2510775	2511357	.	+	.	ID=Os10t0140900-00;Name=Os10t0140900-00;Locus_id=Os10g0140900;Note=Similar to serine-type endopeptidase inhibitor.;Transcript_evidence=EU963926 (DDBJ);ORF_evidence=NP_001149605.1 (RefSeq);TENOR=Os10t0140900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	2510775	2511108	.	+	.	Parent=Os10t0140900-00
Chr10	irgsp1_rep	CDS	2511109	2511357	.	+	0	Parent=Os10t0140900-00
Chr10	irgsp1_rep	mRNA	2517938	2519418	.	-	.	ID=Os10t0141050-00;Name=Os10t0141050-00;Locus_id=Os10g0141050;Note=Hypothetical protein.;Transcript_evidence=tplb0032f19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0141050-00
Chr10	irgsp1_rep	five_prime_UTR	2519043	2519418	.	-	.	Parent=Os10t0141050-00
Chr10	irgsp1_rep	five_prime_UTR	2518740	2518945	.	-	.	Parent=Os10t0141050-00
Chr10	irgsp1_rep	CDS	2518461	2518739	.	-	0	Parent=Os10t0141050-00
Chr10	irgsp1_rep	three_prime_UTR	2517938	2518460	.	-	.	Parent=Os10t0141050-00
Chr10	irgsp1_rep	mRNA	2517965	2520206	.	+	.	ID=Os10t0141200-00;Name=Os10t0141200-00;Locus_id=Os10g0141200;CGSNL Gene Symbol=RLCK290;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 290;Oryzabase Gene Symbol Synonym(s)=OsRLCK290;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 290;Note=Similar to Protein kinase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XGY5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18969;TENOR=Os10t0141200-00
Chr10	irgsp1_rep	CDS	2517965	2518675	.	+	0	Parent=Os10t0141200-00
Chr10	irgsp1_rep	CDS	2518729	2518971	.	+	0	Parent=Os10t0141200-00
Chr10	irgsp1_rep	CDS	2518998	2520206	.	+	0	Parent=Os10t0141200-00
Chr10	irgsp1_rep	mRNA	2523971	2524453	.	+	.	ID=Os10t0141300-00;Name=Os10t0141300-00;Locus_id=Os10g0141300;CGSNL Gene Symbol=WAK100;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 100;Oryzabase Gene Symbol Synonym(s)=OsWAK100%2C OsRLCK291%2C RLCK291;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 291;Note=Similar to Protein kinase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XGY5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);Oryzabase=8019;TENOR=Os10t0141300-00
Chr10	irgsp1_rep	CDS	2523971	2524453	.	+	0	Parent=Os10t0141300-00
Chr10	irgsp1_rep	mRNA	2528896	2531384	.	-	.	ID=Os10t0141400-00;Name=Os10t0141400-00;Locus_id=Os10g0141400;Note=Similar to 26S proteasome non-ATPase regulatory subunit 4.;Transcript_evidence=BT063362 (DDBJ);ORF_evidence=NP_001150010.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=von Willebrand factor%2C type A (IPR002035);TENOR=Os10t0141400-00;KEGG=Os10t0141400-00
Chr10	irgsp1_rep	CDS	2531244	2531384	.	-	0	Parent=Os10t0141400-00
Chr10	irgsp1_rep	CDS	2531018	2531123	.	-	0	Parent=Os10t0141400-00
Chr10	irgsp1_rep	CDS	2529762	2529876	.	-	2	Parent=Os10t0141400-00
Chr10	irgsp1_rep	CDS	2529409	2529603	.	-	1	Parent=Os10t0141400-00
Chr10	irgsp1_rep	CDS	2528896	2529313	.	-	1	Parent=Os10t0141400-00
Chr10	irgsp1_rep	mRNA	2542985	2544603	.	+	.	ID=Os10t0141500-00;Name=Os10t0141500-00;Locus_id=Os10g0141500;Note=Conserved hypothetical protein.;Transcript_evidence=CT833575 (DDBJ%2C Secondary hit);ORF_evidence=Q948C7 (UniProt);TENOR=Os10t0141500-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	2542985	2543397	.	+	.	Parent=Os10t0141500-00
Chr10	irgsp1_rep	CDS	2543398	2543487	.	+	0	Parent=Os10t0141500-00
Chr10	irgsp1_rep	CDS	2543628	2543888	.	+	0	Parent=Os10t0141500-00
Chr10	irgsp1_rep	three_prime_UTR	2543889	2544603	.	+	.	Parent=Os10t0141500-00
Chr10	irgsp1_rep	mRNA	2549382	2551501	.	+	.	ID=Os10t0141600-01;Name=Os10t0141600-01;Locus_id=Os10g0141600;Oryzabase Gene Symbol Synonym(s)=OsFbox531%2C Os_F0024;Oryzabase Gene Name Synonym(s)=F-box protein 531;Note=Conserved hypothetical protein.;Transcript_evidence=AK063564 (DDBJ%2C Best hit);ORF_evidence=A3C2G4 (UniProt);NIAS_FLcDNA=001-117-F07;Oryzabase=17300;TENOR=Os10t0141600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	2549382	2549545	.	+	.	Parent=Os10t0141600-01
Chr10	irgsp1_rep	CDS	2549546	2550620	.	+	0	Parent=Os10t0141600-01
Chr10	irgsp1_rep	CDS	2551228	2551244	.	+	2	Parent=Os10t0141600-01
Chr10	irgsp1_rep	three_prime_UTR	2551245	2551501	.	+	.	Parent=Os10t0141600-01
Chr10	irgsp1_rep	mRNA	2549407	2550307	.	+	.	ID=Os10t0141600-02;Name=Os10t0141600-02;Locus_id=Os10g0141600;Oryzabase Gene Symbol Synonym(s)=OsFbox531%2C Os_F0024;Oryzabase Gene Name Synonym(s)=F-box protein 531;Note=Hypothetical conserved gene.;Transcript_evidence=AK108171 (DDBJ%2C Best hit);ORF_evidence=B8BFQ1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-139-H12;Oryzabase=17300;Expression=AK108171;TENOR=Os10t0141600-02;KEGG=Os10t0141600-02
Chr10	irgsp1_rep	five_prime_UTR	2549407	2549417	.	+	.	Parent=Os10t0141600-02
Chr10	irgsp1_rep	CDS	2549418	2550029	.	+	0	Parent=Os10t0141600-02
Chr10	irgsp1_rep	three_prime_UTR	2550030	2550307	.	+	.	Parent=Os10t0141600-02
Chr10	irgsp1_rep	mRNA	2553979	2557419	.	+	.	ID=Os10t0141700-01;Name=Os10t0141700-01;Locus_id=Os10g0141700;Oryzabase Gene Symbol Synonym(s)=OsFbox532%2C Os_F0058;Oryzabase Gene Name Synonym(s)=F-box protein 532;Note=Hypothetical gene.;Transcript_evidence=AK069162 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023008K11;Oryzabase=17301;Expression=AK069162;TENOR=Os10t0141700-01;KEGG=Os10t0141700-01
Chr10	irgsp1_rep	five_prime_UTR	2553979	2553979	.	+	.	Parent=Os10t0141700-01
Chr10	irgsp1_rep	CDS	2553980	2554279	.	+	0	Parent=Os10t0141700-01
Chr10	irgsp1_rep	CDS	2554941	2554997	.	+	0	Parent=Os10t0141700-01
Chr10	irgsp1_rep	three_prime_UTR	2554998	2555126	.	+	.	Parent=Os10t0141700-01
Chr10	irgsp1_rep	three_prime_UTR	2556913	2557419	.	+	.	Parent=Os10t0141700-01
Chr10	irgsp1_rep	mRNA	2558842	2564272	.	+	.	ID=Os10t0141900-01;Name=Os10t0141900-01;Locus_id=Os10g0141900;Note=Queuine/other tRNA-ribosyltransferase family protein.;Transcript_evidence=AK106467 (DDBJ%2C Best hit);ORF_evidence=Q948C4 (UniProt);GO=Biological Process: tRNA modification (GO:0006400),Biological Process: queuosine biosynthetic process (GO:0008616),Molecular Function: queuine tRNA-ribosyltransferase activity (GO:0008479);InterPro=Queuine/other tRNA-ribosyltransferase (IPR002616);NIAS_FLcDNA=002-103-H07;Expression=AK106467;TENOR=Os10t0141900-01;KEGG=Os10t0141900-01
Chr10	irgsp1_rep	five_prime_UTR	2558842	2558933	.	+	.	Parent=Os10t0141900-01
Chr10	irgsp1_rep	five_prime_UTR	2559864	2559984	.	+	.	Parent=Os10t0141900-01
Chr10	irgsp1_rep	CDS	2559985	2560184	.	+	0	Parent=Os10t0141900-01
Chr10	irgsp1_rep	CDS	2560288	2560462	.	+	1	Parent=Os10t0141900-01
Chr10	irgsp1_rep	CDS	2560559	2560717	.	+	0	Parent=Os10t0141900-01
Chr10	irgsp1_rep	CDS	2561100	2561196	.	+	0	Parent=Os10t0141900-01
Chr10	irgsp1_rep	CDS	2561411	2561481	.	+	2	Parent=Os10t0141900-01
Chr10	irgsp1_rep	CDS	2562187	2562238	.	+	0	Parent=Os10t0141900-01
Chr10	irgsp1_rep	CDS	2562769	2562817	.	+	2	Parent=Os10t0141900-01
Chr10	irgsp1_rep	CDS	2562956	2563093	.	+	1	Parent=Os10t0141900-01
Chr10	irgsp1_rep	CDS	2563644	2563763	.	+	1	Parent=Os10t0141900-01
Chr10	irgsp1_rep	CDS	2563852	2563981	.	+	1	Parent=Os10t0141900-01
Chr10	irgsp1_rep	three_prime_UTR	2563982	2564272	.	+	.	Parent=Os10t0141900-01
Chr10	irgsp1_rep	mRNA	2567515	2572053	.	+	.	ID=Os10t0142100-01;Name=Os10t0142100-01;Locus_id=Os10g0142100;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK071673 (DDBJ%2C Best hit);ORF_evidence=Q10A50 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J023106J06;Expression=AK071673;TENOR=Os10t0142100-01;KEGG=Os10t0142100-01
Chr10	irgsp1_rep	five_prime_UTR	2567515	2567592	.	+	.	Parent=Os10t0142100-01
Chr10	irgsp1_rep	five_prime_UTR	2567779	2567867	.	+	.	Parent=Os10t0142100-01
Chr10	irgsp1_rep	five_prime_UTR	2569454	2569526	.	+	.	Parent=Os10t0142100-01
Chr10	irgsp1_rep	CDS	2569527	2569589	.	+	0	Parent=Os10t0142100-01
Chr10	irgsp1_rep	CDS	2570196	2570325	.	+	0	Parent=Os10t0142100-01
Chr10	irgsp1_rep	CDS	2570413	2570550	.	+	2	Parent=Os10t0142100-01
Chr10	irgsp1_rep	CDS	2571087	2571196	.	+	2	Parent=Os10t0142100-01
Chr10	irgsp1_rep	CDS	2571523	2571552	.	+	0	Parent=Os10t0142100-01
Chr10	irgsp1_rep	three_prime_UTR	2571553	2572053	.	+	.	Parent=Os10t0142100-01
Chr10	irgsp1_rep	mRNA	2570475	2571793	.	+	.	ID=Os10t0142100-02;Name=Os10t0142100-02;Locus_id=Os10g0142100;Note=Similar to Zinc finger%2C C3HC4 type family protein%2C expressed.;Transcript_evidence=AK058523 (DDBJ%2C Best hit);ORF_evidence=Q10A50 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=001-016-H10;Expression=AK058523;TENOR=Os10t0142100-02;KEGG=Os10t0142100-02
Chr10	irgsp1_rep	CDS	2570475	2570550	.	+	0	Parent=Os10t0142100-02
Chr10	irgsp1_rep	CDS	2571087	2571196	.	+	2	Parent=Os10t0142100-02
Chr10	irgsp1_rep	CDS	2571523	2571552	.	+	0	Parent=Os10t0142100-02
Chr10	irgsp1_rep	three_prime_UTR	2571553	2571793	.	+	.	Parent=Os10t0142100-02
Chr10	irgsp1_rep	mRNA	2572703	2573795	.	+	.	ID=Os10t0142301-00;Name=Os10t0142301-00;Locus_id=Os10g0142301;Note=Non-protein coding transcript.;Transcript_evidence=FP100510 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0142301-00
Chr10	irgsp1_rep	exon	2572703	2573085	.	+	.	Parent=Os10t0142301-00
Chr10	irgsp1_rep	exon	2573726	2573795	.	+	.	Parent=Os10t0142301-00
Chr10	irgsp1_rep	mRNA	2587372	2588664	.	+	.	ID=Os10t0142500-01;Name=Os10t0142500-01;Locus_id=Os10g0142500;Oryzabase Gene Symbol Synonym(s)=OsFbox533%2C Os_F0350;Oryzabase Gene Name Synonym(s)=F-box protein 533;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK072788 (DDBJ%2C Best hit);ORF_evidence=Q948C2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023142B11;Oryzabase=17302;Expression=AK072788;TENOR=Os10t0142500-01;KEGG=Os10t0142500-01
Chr10	irgsp1_rep	five_prime_UTR	2587372	2587390	.	+	.	Parent=Os10t0142500-01
Chr10	irgsp1_rep	CDS	2587391	2588575	.	+	0	Parent=Os10t0142500-01
Chr10	irgsp1_rep	three_prime_UTR	2588576	2588664	.	+	.	Parent=Os10t0142500-01
Chr10	irgsp1_rep	mRNA	2594665	2596299	.	+	.	ID=Os10t0142600-00;Name=Os10t0142600-00;Locus_id=Os10g0142600;CGSNL Gene Symbol=WAK101;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 101;Oryzabase Gene Symbol Synonym(s)=OsWAK101%2C OsRLCK292%2C RLCK292;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 292;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001064149.2 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=8020;TENOR=Os10t0142600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	2594665	2596299	.	+	0	Parent=Os10t0142600-00
Chr10	irgsp1_rep	mRNA	2594713	2596911	.	-	.	ID=Os10t0142700-01;Name=Os10t0142700-01;Locus_id=Os10g0142700;Note=Hypothetical gene.;Transcript_evidence=AK111067 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-175-E02;Oryzabase=22562;Expression=AK111067;TENOR=Os10t0142700-01;KEGG=Os10t0142700-01
Chr10	irgsp1_rep	five_prime_UTR	2596910	2596911	.	-	.	Parent=Os10t0142700-01
Chr10	irgsp1_rep	CDS	2596722	2596909	.	-	0	Parent=Os10t0142700-01
Chr10	irgsp1_rep	CDS	2595256	2595283	.	-	1	Parent=Os10t0142700-01
Chr10	irgsp1_rep	three_prime_UTR	2594713	2595255	.	-	.	Parent=Os10t0142700-01
Chr10	irgsp1_rep	mRNA	2614802	2618660	.	+	.	ID=Os10t0142900-01;Name=Os10t0142900-01;Locus_id=Os10g0142900;Note=Similar to RNA methyltransferase%2C TrmH family protein%2C expressed.;Transcript_evidence=AK066152 (DDBJ%2C Best hit);ORF_evidence=Q10T58 (UniProt);NIAS_FLcDNA=J013055N04;TENOR=Os10t0142900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	2614802	2615873	.	+	.	Parent=Os10t0142900-01
Chr10	irgsp1_rep	five_prime_UTR	2615987	2616093	.	+	.	Parent=Os10t0142900-01
Chr10	irgsp1_rep	CDS	2616094	2616164	.	+	0	Parent=Os10t0142900-01
Chr10	irgsp1_rep	CDS	2616241	2616442	.	+	1	Parent=Os10t0142900-01
Chr10	irgsp1_rep	CDS	2616538	2616855	.	+	0	Parent=Os10t0142900-01
Chr10	irgsp1_rep	three_prime_UTR	2616856	2616864	.	+	.	Parent=Os10t0142900-01
Chr10	irgsp1_rep	three_prime_UTR	2618436	2618660	.	+	.	Parent=Os10t0142900-01
Chr10	irgsp1_rep	mRNA	2619498	2619929	.	+	.	ID=Os10t0143200-00;Name=Os10t0143200-00;Locus_id=Os10g0143200;Note=Conserved hypothetical protein.;Transcript_evidence=EU945087 (DDBJ);ORF_evidence=Q948B8 (UniProt);TENOR=Os10t0143200-00
Chr10	irgsp1_rep	CDS	2619498	2619929	.	+	0	Parent=Os10t0143200-00
Chr10	irgsp1_rep	mRNA	2632829	2633427	.	+	.	ID=Os10t0143500-00;Name=Os10t0143500-00;Locus_id=Os10g0143500;Note=Hypothetical protein.;Transcript_evidence=BT016513 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0143500-00
Chr10	irgsp1_rep	five_prime_UTR	2632829	2633158	.	+	.	Parent=Os10t0143500-00
Chr10	irgsp1_rep	CDS	2633159	2633410	.	+	0	Parent=Os10t0143500-00
Chr10	irgsp1_rep	three_prime_UTR	2633411	2633427	.	+	.	Parent=Os10t0143500-00
Chr10	irgsp1_rep	mRNA	2652631	2659894	.	+	.	ID=Os10t0143800-01;Name=Os10t0143800-01;Locus_id=Os10g0143800;Note=Conserved hypothetical protein.;Transcript_evidence=AK288453 (DDBJ%2C Best hit);ORF_evidence=Q6UUI2 (UniProt);NIAS_FLcDNA=J090034P19;TENOR=Os10t0143800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	2652631	2654657	.	+	.	Parent=Os10t0143800-01
Chr10	irgsp1_rep	CDS	2654658	2654864	.	+	0	Parent=Os10t0143800-01
Chr10	irgsp1_rep	three_prime_UTR	2654865	2659894	.	+	.	Parent=Os10t0143800-01
Chr10	irgsp1_rep	mRNA	2662311	2665288	.	+	.	ID=Os10t0143866-00;Name=Os10t0143866-00;Locus_id=Os10g0143866;CGSNL Gene Symbol=WAK102;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 102;Oryzabase Gene Symbol Synonym(s)=OsWAK102%2C OsRLCK293%2C RLCK293;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 293;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q948B1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=8021;TENOR=Os10t0143866-00
Chr10	irgsp1_rep	CDS	2662311	2664203	.	+	0	Parent=Os10t0143866-00
Chr10	irgsp1_rep	CDS	2665163	2665288	.	+	0	Parent=Os10t0143866-00
Chr10	irgsp1_rep	mRNA	2662380	2664228	.	-	.	ID=Os10t0143932-00;Name=Os10t0143932-00;Locus_id=Os10g0143932;Note=Non-protein coding transcript.;Transcript_evidence=tplb0032f19 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os10t0143932-00
Chr10	irgsp1_rep	exon	2663366	2664228	.	-	.	Parent=Os10t0143932-00
Chr10	irgsp1_rep	exon	2662380	2663290	.	-	.	Parent=Os10t0143932-00
Chr10	irgsp1_rep	mRNA	2667065	2667466	.	+	.	ID=Os10t0144000-00;Name=Os10t0144000-00;Locus_id=Os10g0144000;Note=Conserved hypothetical protein.;Transcript_evidence=EU945087 (DDBJ);ORF_evidence=NP_001064152.1 (RefSeq);TENOR=Os10t0144000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	2667065	2667466	.	+	0	Parent=Os10t0144000-00
Chr10	irgsp1_rep	mRNA	2709163	2711992	.	-	.	ID=Os10t0144700-00;Name=Os10t0144700-00;Locus_id=Os10g0144700;Note=CytoChrome P450 domain containing protein.;Transcript_evidence=AK359439 (DDBJ);ORF_evidence=NP_001064153.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os10t0144700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	2710982	2711992	.	-	0	Parent=Os10t0144700-00
Chr10	irgsp1_rep	CDS	2709163	2709777	.	-	0	Parent=Os10t0144700-00
Chr10	irgsp1_rep	mRNA	2715875	2718897	.	-	.	ID=Os10t0144800-00;Name=Os10t0144800-00;Locus_id=Os10g0144800;Oryzabase Gene Symbol Synonym(s)=OsFbox534%2C Os_F0527;Oryzabase Gene Name Synonym(s)=F-box protein 534;Note=Similar to F-box domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XGV9 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);Oryzabase=17303;TENOR=Os10t0144800-00;KEGG=Os10t0144800-00
Chr10	irgsp1_rep	CDS	2717915	2718897	.	-	0	Parent=Os10t0144800-00
Chr10	irgsp1_rep	CDS	2717152	2717311	.	-	1	Parent=Os10t0144800-00
Chr10	irgsp1_rep	CDS	2716166	2716235	.	-	0	Parent=Os10t0144800-00
Chr10	irgsp1_rep	CDS	2715875	2715897	.	-	2	Parent=Os10t0144800-00
Chr10	irgsp1_rep	mRNA	2731736	2734309	.	-	.	ID=Os10t0145000-01;Name=Os10t0145000-01;Locus_id=Os10g0145000;Oryzabase Gene Symbol Synonym(s)=OsFbox535%2C Os_F0208;Oryzabase Gene Name Synonym(s)=F-box protein 535;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK110870 (DDBJ%2C Best hit);ORF_evidence=Q33B36 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-172-E06;Oryzabase=17304;Expression=AK110870;TENOR=Os10t0145000-01;KEGG=Os10t0145000-01
Chr10	irgsp1_rep	five_prime_UTR	2734263	2734309	.	-	.	Parent=Os10t0145000-01
Chr10	irgsp1_rep	CDS	2733125	2734262	.	-	0	Parent=Os10t0145000-01
Chr10	irgsp1_rep	CDS	2732104	2732168	.	-	2	Parent=Os10t0145000-01
Chr10	irgsp1_rep	three_prime_UTR	2731736	2732103	.	-	.	Parent=Os10t0145000-01
Chr10	irgsp1_rep	mRNA	2737043	2741865	.	-	.	ID=Os10t0145100-01;Name=Os10t0145100-01;Locus_id=Os10g0145100;Oryzabase Gene Symbol Synonym(s)=OsFbox536%2C Os_F0201;Oryzabase Gene Name Synonym(s)=F-box protein 536;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK073677 (DDBJ%2C Best hit);ORF_evidence=Q33B36 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033050I02;Oryzabase=17305;Expression=AK073677;TENOR=Os10t0145100-01;KEGG=Os10t0145100-01
Chr10	irgsp1_rep	five_prime_UTR	2741795	2741865	.	-	.	Parent=Os10t0145100-01
Chr10	irgsp1_rep	CDS	2740672	2741794	.	-	0	Parent=Os10t0145100-01
Chr10	irgsp1_rep	CDS	2737979	2737995	.	-	2	Parent=Os10t0145100-01
Chr10	irgsp1_rep	three_prime_UTR	2737903	2737978	.	-	.	Parent=Os10t0145100-01
Chr10	irgsp1_rep	three_prime_UTR	2737043	2737453	.	-	.	Parent=Os10t0145100-01
Chr10	irgsp1_rep	mRNA	2740391	2741808	.	-	.	ID=Os10t0145100-02;Name=Os10t0145100-02;Locus_id=Os10g0145100;Oryzabase Gene Symbol Synonym(s)=OsFbox536%2C Os_F0201;Oryzabase Gene Name Synonym(s)=F-box protein 536;Note=Hypothetical conserved gene.;Transcript_evidence=AK070503 (DDBJ%2C Best hit);ORF_evidence=Q94HS8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023054J12;Oryzabase=17305;Expression=AK070503;TENOR=Os10t0145100-02;KEGG=Os10t0145100-02
Chr10	irgsp1_rep	five_prime_UTR	2741795	2741808	.	-	.	Parent=Os10t0145100-02
Chr10	irgsp1_rep	CDS	2740532	2741794	.	-	0	Parent=Os10t0145100-02
Chr10	irgsp1_rep	three_prime_UTR	2740391	2740531	.	-	.	Parent=Os10t0145100-02
Chr10	irgsp1_rep	mRNA	2743360	2748402	.	-	.	ID=Os10t0145200-01;Name=Os10t0145200-01;Locus_id=Os10g0145200;Oryzabase Gene Symbol Synonym(s)=OsFbox537%2C Os_F0165;Oryzabase Gene Name Synonym(s)=F-box protein 537;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK103298 (DDBJ%2C Best hit);ORF_evidence=Q33B36 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033125B11;Oryzabase=17306;Expression=AK103298;TENOR=Os10t0145200-01;KEGG=Os10t0145200-01
Chr10	irgsp1_rep	five_prime_UTR	2748362	2748402	.	-	.	Parent=Os10t0145200-01
Chr10	irgsp1_rep	CDS	2747230	2748361	.	-	0	Parent=Os10t0145200-01
Chr10	irgsp1_rep	CDS	2745160	2745164	.	-	2	Parent=Os10t0145200-01
Chr10	irgsp1_rep	three_prime_UTR	2745084	2745159	.	-	.	Parent=Os10t0145200-01
Chr10	irgsp1_rep	three_prime_UTR	2743360	2743614	.	-	.	Parent=Os10t0145200-01
Chr10	irgsp1_rep	mRNA	2794635	2796332	.	-	.	ID=Os10t0146200-01;Name=Os10t0146200-01;Locus_id=Os10g0146200;Note=Similar to Thaumatin-like protein.;Transcript_evidence=AK109913 (DDBJ%2C Best hit);ORF_evidence=Q33B32 (UniProt);InterPro=Thaumatin%2C pathogenesis-related (IPR001938);NIAS_FLcDNA=002-150-A03;Oryzabase=23041;Expression=AK109913;TENOR=Os10t0146200-01;KEGG=Os10t0146200-01
Chr10	irgsp1_rep	five_prime_UTR	2796332	2796332	.	-	.	Parent=Os10t0146200-01
Chr10	irgsp1_rep	CDS	2795586	2796331	.	-	0	Parent=Os10t0146200-01
Chr10	irgsp1_rep	CDS	2794826	2795192	.	-	1	Parent=Os10t0146200-01
Chr10	irgsp1_rep	three_prime_UTR	2794635	2794825	.	-	.	Parent=Os10t0146200-01
Chr10	irgsp1_rep	mRNA	2795561	2796325	.	+	.	ID=Os10t0146601-00;Name=Os10t0146601-00;Locus_id=Os10g0146601;Note=Hypothetical gene.;Transcript_evidence=EU967040 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0146601-00;KEGG=Os10t0146601-00
Chr10	irgsp1_rep	CDS	2795561	2796325	.	+	0	Parent=Os10t0146601-00
Chr10	irgsp1_rep	mRNA	2829208	2830058	.	-	.	ID=Os10t0146901-00;Name=Os10t0146901-00;Locus_id=Os10g0146901;Note=Hypothetical protein.;Transcript_evidence=EU967040 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0146901-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	2830057	2830058	.	-	.	Parent=Os10t0146901-00
Chr10	irgsp1_rep	CDS	2829301	2830056	.	-	0	Parent=Os10t0146901-00
Chr10	irgsp1_rep	three_prime_UTR	2829208	2829300	.	-	.	Parent=Os10t0146901-00
Chr10	irgsp1_rep	mRNA	2829929	2831150	.	+	.	ID=Os10t0147200-01;Name=Os10t0147200-01;Locus_id=Os10g0147200;Note=Similar to Thaumatin-like protein.;Transcript_evidence=AK111104 (DDBJ%2C Best hit);ORF_evidence=B6TTJ7 (UniProt);InterPro=Thaumatin%2C pathogenesis-related (IPR001938);NIAS_FLcDNA=002-175-H11;Expression=AK111104;TENOR=Os10t0147200-01;KEGG=Os10t0147200-01
Chr10	irgsp1_rep	five_prime_UTR	2829929	2829930	.	+	.	Parent=Os10t0147200-01
Chr10	irgsp1_rep	CDS	2829931	2830055	.	+	0	Parent=Os10t0147200-01
Chr10	irgsp1_rep	CDS	2830615	2830798	.	+	1	Parent=Os10t0147200-01
Chr10	irgsp1_rep	three_prime_UTR	2830799	2831150	.	+	.	Parent=Os10t0147200-01
Chr10	irgsp1_rep	mRNA	2837355	2839946	.	+	.	ID=Os10t0147250-00;Name=Os10t0147250-00;Locus_id=Os10g0147250;Note=Hypothetical conserved gene.;Transcript_evidence=AK333488 (DDBJ);ORF_evidence=Q94HS0 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);TENOR=Os10t0147250-00;KEGG=Os10t0147250-00
Chr10	irgsp1_rep	five_prime_UTR	2837355	2837381	.	+	.	Parent=Os10t0147250-00
Chr10	irgsp1_rep	CDS	2837382	2839946	.	+	0	Parent=Os10t0147250-00
Chr10	irgsp1_rep	mRNA	2843303	2844562	.	+	.	ID=Os10t0147300-01;Name=Os10t0147300-01;Locus_id=Os10g0147300;Note=Conserved hypothetical protein.;Transcript_evidence=AK120380 (DDBJ%2C Best hit);ORF_evidence=B9G7I8 (UniProt);NIAS_FLcDNA=J013072I24;TENOR=Os10t0147300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	2843303	2843304	.	+	.	Parent=Os10t0147300-01
Chr10	irgsp1_rep	CDS	2843305	2843556	.	+	0	Parent=Os10t0147300-01
Chr10	irgsp1_rep	three_prime_UTR	2843557	2843797	.	+	.	Parent=Os10t0147300-01
Chr10	irgsp1_rep	three_prime_UTR	2844273	2844562	.	+	.	Parent=Os10t0147300-01
Chr10	irgsp1_rep	mRNA	2843429	2845284	.	+	.	ID=Os10t0147300-02;Name=Os10t0147300-02;Locus_id=Os10g0147300;Note=Similar to Homeobox domain containing protein%2C expressed.;Transcript_evidence=AK059657 (DDBJ%2C Best hit);ORF_evidence=Q10EF9 (UniProt);NIAS_FLcDNA=001-031-D05;TENOR=Os10t0147300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	2843429	2843696	.	+	.	Parent=Os10t0147300-02
Chr10	irgsp1_rep	CDS	2843697	2844026	.	+	0	Parent=Os10t0147300-02
Chr10	irgsp1_rep	three_prime_UTR	2844027	2844312	.	+	.	Parent=Os10t0147300-02
Chr10	irgsp1_rep	three_prime_UTR	2845020	2845284	.	+	.	Parent=Os10t0147300-02
Chr10	irgsp1_rep	mRNA	2849620	2855809	.	-	.	ID=Os10t0147400-01;Name=Os10t0147400-01;Locus_id=Os10g0147400;Oryzabase Gene Symbol Synonym(s)=OsLAX4%2C OsRAU4%2C OsAUX4%2C LAX4%2C RAU4%2C AUX4;Oryzabase Gene Name Synonym(s)=like aux1-4%2C related to AUX1-4%2C auxin transporter 4;Note=Similar to Auxin influx carrier protein.;Transcript_evidence=AK102295 (DDBJ%2C Best hit),AK102729 (DDBJ%2C Best hit);ORF_evidence=B6TFK4 (UniProt);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=J033089L08,J033105O21;Oryzabase=11919;Expression=AK102295;TENOR=Os10t0147400-01;KEGG=Os10t0147400-01
Chr10	irgsp1_rep	five_prime_UTR	2855686	2855809	.	-	.	Parent=Os10t0147400-01
Chr10	irgsp1_rep	CDS	2855278	2855685	.	-	0	Parent=Os10t0147400-01
Chr10	irgsp1_rep	CDS	2854773	2855069	.	-	0	Parent=Os10t0147400-01
Chr10	irgsp1_rep	CDS	2854381	2854478	.	-	0	Parent=Os10t0147400-01
Chr10	irgsp1_rep	CDS	2852155	2852620	.	-	1	Parent=Os10t0147400-01
Chr10	irgsp1_rep	CDS	2849957	2850331	.	-	0	Parent=Os10t0147400-01
Chr10	irgsp1_rep	three_prime_UTR	2849620	2849956	.	-	.	Parent=Os10t0147400-01
Chr10	irgsp1_rep	mRNA	2849633	2851034	.	-	.	ID=Os10t0147400-03;Name=Os10t0147400-03;Locus_id=Os10g0147400;Oryzabase Gene Symbol Synonym(s)=OsLAX4%2C OsRAU4%2C OsAUX4%2C LAX4%2C RAU4%2C AUX4;Oryzabase Gene Name Synonym(s)=like aux1-4%2C related to AUX1-4%2C auxin transporter 4;Note=Similar to Auxin transporter-like protein 3.;Transcript_evidence=AK063919 (DDBJ%2C Best hit);ORF_evidence=NP_001105117.1 (RefSeq);NIAS_FLcDNA=001-123-B07;Oryzabase=11919;Expression=AK063919;TENOR=Os10t0147400-03;KEGG=Os10t0147400-03
Chr10	irgsp1_rep	five_prime_UTR	2850353	2851034	.	-	.	Parent=Os10t0147400-03
Chr10	irgsp1_rep	CDS	2849957	2850352	.	-	0	Parent=Os10t0147400-03
Chr10	irgsp1_rep	three_prime_UTR	2849633	2849956	.	-	.	Parent=Os10t0147400-03
Chr10	irgsp1_rep	mRNA	2850079	2855639	.	+	.	ID=Os10t0147566-00;Name=Os10t0147566-00;Locus_id=Os10g0147566;Note=Hypothetical protein.;Transcript_evidence=tplb0034o11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0147566-00
Chr10	irgsp1_rep	five_prime_UTR	2850079	2850212	.	+	.	Parent=Os10t0147566-00
Chr10	irgsp1_rep	CDS	2850213	2850328	.	+	0	Parent=Os10t0147566-00
Chr10	irgsp1_rep	CDS	2852151	2852607	.	+	1	Parent=Os10t0147566-00
Chr10	irgsp1_rep	CDS	2854367	2854387	.	+	0	Parent=Os10t0147566-00
Chr10	irgsp1_rep	three_prime_UTR	2854388	2854460	.	+	.	Parent=Os10t0147566-00
Chr10	irgsp1_rep	three_prime_UTR	2854761	2855072	.	+	.	Parent=Os10t0147566-00
Chr10	irgsp1_rep	three_prime_UTR	2855274	2855639	.	+	.	Parent=Os10t0147566-00
Chr10	irgsp1_rep	mRNA	2887387	2889781	.	-	.	ID=Os10t0147900-01;Name=Os10t0147900-01;Locus_id=Os10g0147900;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK120943 (DDBJ%2C Best hit);ORF_evidence=B6ST20 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023037M05;Expression=AK120943;TENOR=Os10t0147900-01;KEGG=Os10t0147900-01
Chr10	irgsp1_rep	five_prime_UTR	2889597	2889781	.	-	.	Parent=Os10t0147900-01
Chr10	irgsp1_rep	CDS	2887614	2889596	.	-	0	Parent=Os10t0147900-01
Chr10	irgsp1_rep	three_prime_UTR	2887387	2887613	.	-	.	Parent=Os10t0147900-01
Chr10	irgsp1_rep	mRNA	2885294	2889777	.	-	.	ID=Os10t0147900-02;Name=Os10t0147900-02;Locus_id=Os10g0147900;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK105620 (DDBJ%2C Best hit);ORF_evidence=B6ST20 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=001-200-C05;Expression=AK105620;TENOR=Os10t0147900-02;KEGG=Os10t0147900-02
Chr10	irgsp1_rep	five_prime_UTR	2889597	2889777	.	-	.	Parent=Os10t0147900-02
Chr10	irgsp1_rep	CDS	2887614	2889596	.	-	0	Parent=Os10t0147900-02
Chr10	irgsp1_rep	three_prime_UTR	2887587	2887613	.	-	.	Parent=Os10t0147900-02
Chr10	irgsp1_rep	three_prime_UTR	2885294	2885900	.	-	.	Parent=Os10t0147900-02
Chr10	irgsp1_rep	mRNA	2885587	2886483	.	+	.	ID=Os10t0148000-01;Name=Os10t0148000-01;Locus_id=Os10g0148000;Oryzabase Gene Symbol Synonym(s)=OsLTPd11%2C OsLTP6%2C OsLtpVI.3%2C OsDIL%2C DIL;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein d11%2C lipid transfer protein d11%2C type D non-specific lipid transfer protein 11%2C Drought-Induced LTP%2C Drought-Induced lipid transfer protein;Note=Hypothetical conserved gene.;Transcript_evidence=AK242537 (DDBJ%2C Best hit);ORF_evidence=Q10A49 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=J080317E23;Oryzabase=13552;TENOR=Os10t0148000-01;KEGG=Os10t0148000-01
Chr10	irgsp1_rep	CDS	2885587	2885830	.	+	0	Parent=Os10t0148000-01
Chr10	irgsp1_rep	CDS	2886271	2886284	.	+	2	Parent=Os10t0148000-01
Chr10	irgsp1_rep	three_prime_UTR	2886285	2886483	.	+	.	Parent=Os10t0148000-01
Chr10	irgsp1_rep	mRNA	2885469	2886579	.	+	.	ID=Os10t0148000-02;Name=Os10t0148000-02;Locus_id=Os10g0148000;RAP-DB Gene Symbol Synonym(s)=OsLTPd11%2C OsLTP6%2C OsLtpVI.3%2C OsDIL%2C DIL;RAP-DB Gene Name Synonym(s)=non-specific lipid transfer protein d11%2C lipid transfer protein d11%2C type D non-specific lipid transfer protein 11%2C  Drought-Induced LTP%2C Drought-Induced lipid transfer protein;Oryzabase Gene Symbol Synonym(s)=OsLTPd11%2C OsLTP6%2C OsLtpVI.3%2C OsDIL%2C DIL;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein d11%2C lipid transfer protein d11%2C type D non-specific lipid transfer protein 11%2C Drought-Induced LTP%2C Drought-Induced lipid transfer protein;Note=Lipid transfer protein%2C Drought tolerance;Transcript_evidence=NM_001070697.2;ORF_evidence=Q33B26;InterPro=Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain (IPR016140);Manual Curation=October 20%2C 2015;Literature_PMID=23686450;Oryzabase=13552
Chr10	irgsp1_rep	five_prime_UTR	2885469	2885514	.	+	.	Parent=Os10t0148000-02
Chr10	irgsp1_rep	CDS	2885515	2885862	.	+	0	Parent=Os10t0148000-02
Chr10	irgsp1_rep	three_prime_UTR	2885863	2885945	.	+	.	Parent=Os10t0148000-02
Chr10	irgsp1_rep	three_prime_UTR	2886271	2886579	.	+	.	Parent=Os10t0148000-02
Chr10	irgsp1_rep	mRNA	2897688	2899059	.	-	.	ID=Os10t0148100-01;Name=Os10t0148100-01;Locus_id=Os10g0148100;RAP-DB Gene Symbol Synonym(s)=OsPRP3;RAP-DB Gene Name Synonym(s)=Proline-Rich Protein 3;Note=Flower specific proline-rich protein%2C Determination of extracellular matrix structure of floral organs%2C Cold tolerance;Transcript_evidence=AK099480,AK059665;ORF_evidence=Q7XGT9;NIAS_FLcDNA=J013025G01,001-031-E08;Manual Curation=November 5%2C 2020;Literature_PMID=19830390;Expression=AK099480;TENOR=Os10t0148100-01;KEGG=Os10t0148100-01;Subcellular location=cell wall (GO:0005618)
Chr10	irgsp1_rep	five_prime_UTR	2899004	2899059	.	-	.	Parent=Os10t0148100-01
Chr10	irgsp1_rep	CDS	2898829	2899003	.	-	0	Parent=Os10t0148100-01
Chr10	irgsp1_rep	CDS	2897898	2898538	.	-	2	Parent=Os10t0148100-01
Chr10	irgsp1_rep	three_prime_UTR	2897688	2897897	.	-	.	Parent=Os10t0148100-01
Chr10	irgsp1_rep	mRNA	2912901	2914656	.	-	.	ID=Os10t0148400-00;Name=Os10t0148400-00;Locus_id=Os10g0148400;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Similar to POT family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001147599.1 (RefSeq);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);Oryzabase=23686;TENOR=Os10t0148400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	2914545	2914656	.	-	0	Parent=Os10t0148400-00
Chr10	irgsp1_rep	CDS	2912901	2914450	.	-	2	Parent=Os10t0148400-00
Chr10	irgsp1_rep	mRNA	2921766	2923678	.	-	.	ID=Os10t0148700-01;Name=Os10t0148700-01;Locus_id=Os10g0148700;Oryzabase Gene Symbol Synonym(s)=AGP%2C OsAGP;Oryzabase Gene Name Synonym(s)=Arabinogalactan protein;Note=Protein of unknown function DUF1210 family protein.;Transcript_evidence=AK071590 (DDBJ%2C Best hit);ORF_evidence=Q94GB4 (UniProt);InterPro=Pollen Ole e 1 allergen/extensin (IPR006041);NIAS_FLcDNA=J023100N02;Oryzabase=23019;Expression=AK071590;TENOR=Os10t0148700-01;KEGG=Os10t0148700-01
Chr10	irgsp1_rep	five_prime_UTR	2923626	2923678	.	-	.	Parent=Os10t0148700-01
Chr10	irgsp1_rep	CDS	2923466	2923625	.	-	0	Parent=Os10t0148700-01
Chr10	irgsp1_rep	CDS	2922024	2922769	.	-	2	Parent=Os10t0148700-01
Chr10	irgsp1_rep	three_prime_UTR	2921766	2922023	.	-	.	Parent=Os10t0148700-01
Chr10	irgsp1_rep	mRNA	2925418	2934130	.	-	.	ID=Os10t0148800-01;Name=Os10t0148800-01;Locus_id=Os10g0148800;Oryzabase Gene Symbol Synonym(s)=Os_F0711;Note=Similar to F-box domain containing protein%2C expressed.;Transcript_evidence=AK243395 (DDBJ%2C Best hit);ORF_evidence=B9G7J4 (UniProt);InterPro=Leucine-rich repeat%2C cysteine-containing subtype (IPR006553);NIAS_FLcDNA=J100064D21;Oryzabase=17542;TENOR=Os10t0148800-01;KEGG=Os10t0148800-01
Chr10	irgsp1_rep	five_prime_UTR	2934062	2934130	.	-	.	Parent=Os10t0148800-01
Chr10	irgsp1_rep	CDS	2933759	2934061	.	-	0	Parent=Os10t0148800-01
Chr10	irgsp1_rep	CDS	2933243	2933500	.	-	0	Parent=Os10t0148800-01
Chr10	irgsp1_rep	CDS	2932467	2932876	.	-	0	Parent=Os10t0148800-01
Chr10	irgsp1_rep	CDS	2929787	2929972	.	-	1	Parent=Os10t0148800-01
Chr10	irgsp1_rep	CDS	2928192	2928381	.	-	1	Parent=Os10t0148800-01
Chr10	irgsp1_rep	CDS	2926513	2926589	.	-	0	Parent=Os10t0148800-01
Chr10	irgsp1_rep	CDS	2926174	2926224	.	-	1	Parent=Os10t0148800-01
Chr10	irgsp1_rep	CDS	2925870	2925891	.	-	1	Parent=Os10t0148800-01
Chr10	irgsp1_rep	three_prime_UTR	2925418	2925869	.	-	.	Parent=Os10t0148800-01
Chr10	irgsp1_rep	mRNA	2942140	2942901	.	-	.	ID=Os10t0149000-00;Name=Os10t0149000-00;Locus_id=Os10g0149000;Note=Protein of unknown function DUF1210 family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001149224.1 (RefSeq);InterPro=Pollen Ole e 1 allergen/extensin (IPR006041);TENOR=Os10t0149000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	2942751	2942901	.	-	0	Parent=Os10t0149000-00
Chr10	irgsp1_rep	CDS	2942140	2942648	.	-	2	Parent=Os10t0149000-00
Chr10	irgsp1_rep	mRNA	2950257	2951031	.	-	.	ID=Os10t0149100-00;Name=Os10t0149100-00;Locus_id=Os10g0149100;Note=Similar to proline-rich protein.;Transcript_evidence=FP097194 (DDBJ);ORF_evidence=B6SJA4 (UniProt);TENOR=Os10t0149100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	2950876	2951031	.	-	.	Parent=Os10t0149100-00
Chr10	irgsp1_rep	five_prime_UTR	2950713	2950765	.	-	.	Parent=Os10t0149100-00
Chr10	irgsp1_rep	CDS	2950257	2950712	.	-	0	Parent=Os10t0149100-00
Chr10	irgsp1_rep	mRNA	2958892	2960029	.	-	.	ID=Os10t0149200-01;Name=Os10t0149200-01;Locus_id=Os10g0149200;Note=Protein of unknown function DUF1210 family protein.;Transcript_evidence=AK242084 (DDBJ%2C Best hit);ORF_evidence=A3C2K0 (UniProt);InterPro=Pollen Ole e 1 allergen/extensin (IPR006041);NIAS_FLcDNA=J075140D17;TENOR=Os10t0149200-01;KEGG=Os10t0149200-01
Chr10	irgsp1_rep	five_prime_UTR	2959957	2960029	.	-	.	Parent=Os10t0149200-01
Chr10	irgsp1_rep	CDS	2959791	2959956	.	-	0	Parent=Os10t0149200-01
Chr10	irgsp1_rep	CDS	2959180	2959688	.	-	2	Parent=Os10t0149200-01
Chr10	irgsp1_rep	three_prime_UTR	2958892	2959179	.	-	.	Parent=Os10t0149200-01
Chr10	irgsp1_rep	mRNA	2966920	2967640	.	-	.	ID=Os10t0149400-00;Name=Os10t0149400-00;Locus_id=Os10g0149400;Note=Similar to proline-rich protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001149224.1 (RefSeq);InterPro=Pollen Ole e 1 allergen/extensin (IPR006041);TENOR=Os10t0149400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	2967532	2967640	.	-	0	Parent=Os10t0149400-00
Chr10	irgsp1_rep	CDS	2966920	2967428	.	-	2	Parent=Os10t0149400-00
Chr10	irgsp1_rep	mRNA	2978422	2981505	.	+	.	ID=Os10t0149700-01;Name=Os10t0149700-01;Locus_id=Os10g0149700;Note=Conserved hypothetical protein.;Transcript_evidence=AK064371 (DDBJ%2C Best hit);ORF_evidence=Q33B19 (UniProt);NIAS_FLcDNA=002-108-C12;TENOR=Os10t0149700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	2978422	2978890	.	+	.	Parent=Os10t0149700-01
Chr10	irgsp1_rep	CDS	2978891	2978932	.	+	0	Parent=Os10t0149700-01
Chr10	irgsp1_rep	CDS	2979087	2979137	.	+	0	Parent=Os10t0149700-01
Chr10	irgsp1_rep	CDS	2979218	2979334	.	+	0	Parent=Os10t0149700-01
Chr10	irgsp1_rep	CDS	2979477	2979554	.	+	0	Parent=Os10t0149700-01
Chr10	irgsp1_rep	CDS	2980025	2980164	.	+	0	Parent=Os10t0149700-01
Chr10	irgsp1_rep	CDS	2980279	2980345	.	+	1	Parent=Os10t0149700-01
Chr10	irgsp1_rep	three_prime_UTR	2980346	2980359	.	+	.	Parent=Os10t0149700-01
Chr10	irgsp1_rep	three_prime_UTR	2981156	2981505	.	+	.	Parent=Os10t0149700-01
Chr10	irgsp1_rep	mRNA	2981620	2982619	.	-	.	ID=Os10t0149800-00;Name=Os10t0149800-00;Locus_id=Os10g0149800;Note=Protein of unknown function DUF1210 family protein.;Transcript_evidence=CT836556 (DDBJ%2C Best hit);ORF_evidence=NP_001064171.1 (RefSeq);InterPro=Pollen Ole e 1 allergen/extensin (IPR006041);TENOR=Os10t0149800-00;KEGG=Os10t0149800-00
Chr10	irgsp1_rep	five_prime_UTR	2982572	2982619	.	-	.	Parent=Os10t0149800-00
Chr10	irgsp1_rep	CDS	2982400	2982571	.	-	0	Parent=Os10t0149800-00
Chr10	irgsp1_rep	CDS	2981855	2982303	.	-	2	Parent=Os10t0149800-00
Chr10	irgsp1_rep	three_prime_UTR	2981620	2981854	.	-	.	Parent=Os10t0149800-00
Chr10	irgsp1_rep	mRNA	2991341	2992012	.	+	.	ID=Os10t0150000-01;Name=Os10t0150000-01;Locus_id=Os10g0150000;Note=Hypothetical conserved gene.;Transcript_evidence=AK242674 (DDBJ%2C Best hit);ORF_evidence=NP_001149224.1 (RefSeq);NIAS_FLcDNA=J090031E10;TENOR=Os10t0150000-01;KEGG=Os10t0150000-01
Chr10	irgsp1_rep	CDS	2991341	2991694	.	+	0	Parent=Os10t0150000-01
Chr10	irgsp1_rep	three_prime_UTR	2991695	2992012	.	+	.	Parent=Os10t0150000-01
Chr10	irgsp1_rep	mRNA	2995427	2998062	.	+	.	ID=Os10t0150200-01;Name=Os10t0150200-01;Locus_id=Os10g0150200;Note=Sterile alpha motif homology domain containing protein.;Transcript_evidence=AK241409 (DDBJ%2C Best hit);ORF_evidence=Q9M9L5 (UniProt);InterPro=IGR protein motif (IPR019083);NIAS_FLcDNA=J065159J04;TENOR=Os10t0150200-01;KEGG=Os10t0150200-01
Chr10	irgsp1_rep	five_prime_UTR	2995427	2995452	.	+	.	Parent=Os10t0150200-01
Chr10	irgsp1_rep	CDS	2995453	2995534	.	+	0	Parent=Os10t0150200-01
Chr10	irgsp1_rep	CDS	2995621	2995772	.	+	2	Parent=Os10t0150200-01
Chr10	irgsp1_rep	CDS	2997672	2997752	.	+	0	Parent=Os10t0150200-01
Chr10	irgsp1_rep	three_prime_UTR	2997753	2998062	.	+	.	Parent=Os10t0150200-01
Chr10	irgsp1_rep	mRNA	2999345	3001254	.	-	.	ID=Os10t0150300-01;Name=Os10t0150300-01;Locus_id=Os10g0150300;Note=Protein of unknown function DUF1210 family protein.;Transcript_evidence=AK287690 (DDBJ%2C Best hit);ORF_evidence=A6MZD0 (UniProt);InterPro=Pollen Ole e 1 allergen/extensin (IPR006041);NIAS_FLcDNA=J065128E07;TENOR=Os10t0150300-01;KEGG=Os10t0150300-01
Chr10	irgsp1_rep	five_prime_UTR	3001186	3001254	.	-	.	Parent=Os10t0150300-01
Chr10	irgsp1_rep	CDS	3001041	3001185	.	-	0	Parent=Os10t0150300-01
Chr10	irgsp1_rep	CDS	2999621	3000066	.	-	2	Parent=Os10t0150300-01
Chr10	irgsp1_rep	three_prime_UTR	2999345	2999620	.	-	.	Parent=Os10t0150300-01
Chr10	irgsp1_rep	mRNA	3012860	3013949	.	-	.	ID=Os10t0150400-01;Name=Os10t0150400-01;Locus_id=Os10g0150400;Note=Protein of unknown function DUF1210 family protein.;Transcript_evidence=AK061529 (DDBJ%2C Best hit),AK059999 (DDBJ%2C Best hit),AK104236 (DDBJ%2C Best hit);ORF_evidence=Q8RVW6 (UniProt);NIAS_FLcDNA=006-310-E01,006-301-G07,006-307-G04;TENOR=Os10t0150400-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	3013887	3013949	.	-	.	Parent=Os10t0150400-01
Chr10	irgsp1_rep	CDS	3013733	3013886	.	-	0	Parent=Os10t0150400-01
Chr10	irgsp1_rep	CDS	3013098	3013618	.	-	2	Parent=Os10t0150400-01
Chr10	irgsp1_rep	three_prime_UTR	3012860	3013097	.	-	.	Parent=Os10t0150400-01
Chr10	irgsp1_rep	mRNA	3016889	3018047	.	+	.	ID=Os10t0150600-01;Name=Os10t0150600-01;Locus_id=Os10g0150600;Note=Protein of unknown function DUF1210 family protein.;Transcript_evidence=AK104257 (DDBJ%2C Best hit),AK058887 (DDBJ%2C Best hit),AK061576 (DDBJ%2C Best hit),AK072923 (DDBJ%2C Best hit),AK104542 (DDBJ%2C Best hit);ORF_evidence=A6MZD0 (UniProt);InterPro=Pollen Ole e 1 allergen/extensin (IPR006041);NIAS_FLcDNA=006-309-F02,001-007-C09,006-311-G10,J023146D17,006-305-B03;TENOR=Os10t0150600-01
Chr10	irgsp1_rep	five_prime_UTR	3016889	3016936	.	+	.	Parent=Os10t0150600-01
Chr10	irgsp1_rep	CDS	3016937	3017090	.	+	0	Parent=Os10t0150600-01
Chr10	irgsp1_rep	CDS	3017239	3017774	.	+	2	Parent=Os10t0150600-01
Chr10	irgsp1_rep	three_prime_UTR	3017775	3018047	.	+	.	Parent=Os10t0150600-01
Chr10	irgsp1_rep	mRNA	3020705	3022087	.	+	.	ID=Os10t0150700-01;Name=Os10t0150700-01;Locus_id=Os10g0150700;Note=Protein of unknown function DUF1210 family protein.;Transcript_evidence=AK067147 (DDBJ%2C Best hit),AK059996 (DDBJ%2C Best hit),AK061567 (DDBJ%2C Best hit),AK104235 (DDBJ%2C Best hit),AK104262 (DDBJ%2C Best hit),AK104398 (DDBJ%2C Best hit),AK104622 (DDBJ%2C Best hit),AK104765 (DDBJ%2C Best hit);ORF_evidence=A6MZD0 (UniProt);InterPro=Pollen Ole e 1 allergen/extensin (IPR006041);NIAS_FLcDNA=J013098B06,006-301-F05,006-311-F04,006-307-F12,006-310-C07,006-202-D05,006-309-H10,001-038-H08;TENOR=Os10t0150700-01
Chr10	irgsp1_rep	five_prime_UTR	3020705	3020765	.	+	.	Parent=Os10t0150700-01
Chr10	irgsp1_rep	CDS	3020766	3020919	.	+	0	Parent=Os10t0150700-01
Chr10	irgsp1_rep	CDS	3021272	3021807	.	+	2	Parent=Os10t0150700-01
Chr10	irgsp1_rep	three_prime_UTR	3021808	3022087	.	+	.	Parent=Os10t0150700-01
Chr10	irgsp1_rep	mRNA	3031619	3032661	.	+	.	ID=Os10t0150800-01;Name=Os10t0150800-01;Locus_id=Os10g0150800;Note=Protein of unknown function DUF1210 family protein.;Transcript_evidence=AK061299 (DDBJ%2C Best hit),AK062795 (DDBJ%2C Best hit);ORF_evidence=Q8RVW6 (UniProt);InterPro=Pollen Ole e 1 allergen/extensin (IPR006041);NIAS_FLcDNA=006-301-E05,001-107-C07;TENOR=Os10t0150800-01
Chr10	irgsp1_rep	five_prime_UTR	3031619	3031675	.	+	.	Parent=Os10t0150800-01
Chr10	irgsp1_rep	CDS	3031676	3031829	.	+	0	Parent=Os10t0150800-01
Chr10	irgsp1_rep	CDS	3031945	3032480	.	+	2	Parent=Os10t0150800-01
Chr10	irgsp1_rep	three_prime_UTR	3032481	3032661	.	+	.	Parent=Os10t0150800-01
Chr10	irgsp1_rep	mRNA	3060912	3065547	.	+	.	ID=Os10t0151100-00;Name=Os10t0151100-00;Locus_id=Os10g0151100;CGSNL Gene Symbol=WAK103;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 103;Oryzabase Gene Symbol Synonym(s)=OsWAK103;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=tplb0046l17 (Wheat FLcDNA);ORF_evidence=Q7XGR2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),EGF-like calcium-binding (IPR001881),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EGF-like calcium-binding%2C conserved site (IPR018097),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=8022;TENOR=Os10t0151100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	3060912	3061839	.	+	0	Parent=Os10t0151100-00
Chr10	irgsp1_rep	CDS	3063448	3063621	.	+	2	Parent=Os10t0151100-00
Chr10	irgsp1_rep	CDS	3064553	3065547	.	+	2	Parent=Os10t0151100-00
Chr10	irgsp1_rep	mRNA	3060979	3065460	.	-	.	ID=Os10t0151233-00;Name=Os10t0151233-00;Locus_id=Os10g0151233;Note=Hypothetical protein.;Transcript_evidence=tplb0044f04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0151233-00
Chr10	irgsp1_rep	five_prime_UTR	3065190	3065460	.	-	.	Parent=Os10t0151233-00
Chr10	irgsp1_rep	CDS	3064740	3065189	.	-	0	Parent=Os10t0151233-00
Chr10	irgsp1_rep	three_prime_UTR	3064545	3064739	.	-	.	Parent=Os10t0151233-00
Chr10	irgsp1_rep	three_prime_UTR	3063474	3063611	.	-	.	Parent=Os10t0151233-00
Chr10	irgsp1_rep	three_prime_UTR	3060979	3061874	.	-	.	Parent=Os10t0151233-00
Chr10	irgsp1_rep	mRNA	3067894	3071847	.	-	.	ID=Os10t0151366-00;Name=Os10t0151366-00;Locus_id=Os10g0151366;Note=Similar to RNA-binding region RNP-1 (RNA recognition motif)%3B Calcium-binding EF-hand.;Transcript_evidence=EU947300 (DDBJ);ORF_evidence=Q2HTD6 (UniProt);TENOR=Os10t0151366-00
Chr10	irgsp1_rep	CDS	3071641	3071847	.	-	0	Parent=Os10t0151366-00
Chr10	irgsp1_rep	three_prime_UTR	3071620	3071640	.	-	.	Parent=Os10t0151366-00
Chr10	irgsp1_rep	three_prime_UTR	3068635	3068705	.	-	.	Parent=Os10t0151366-00
Chr10	irgsp1_rep	three_prime_UTR	3067894	3068152	.	-	.	Parent=Os10t0151366-00
Chr10	irgsp1_rep	mRNA	3090572	3097445	.	+	.	ID=Os10t0151500-00;Name=Os10t0151500-00;Locus_id=Os10g0151500;CGSNL Gene Symbol=WAK104;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 104;Oryzabase Gene Symbol Synonym(s)=OsWAK104;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=tplb0055a02 (Wheat FLcDNA);ORF_evidence=Q7XGR2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=EGF-type aspartate/asparagine hydroxylation site (IPR000152),Protein kinase%2C catalytic domain (IPR000719),EGF-like calcium-binding (IPR001881),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EGF-like calcium-binding%2C conserved site (IPR018097),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=8023;TENOR=Os10t0151500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	3090572	3091526	.	+	0	Parent=Os10t0151500-00
Chr10	irgsp1_rep	CDS	3092118	3092285	.	+	2	Parent=Os10t0151500-00
Chr10	irgsp1_rep	CDS	3096298	3097445	.	+	2	Parent=Os10t0151500-00
Chr10	irgsp1_rep	mRNA	3090604	3097280	.	-	.	ID=Os10t0151650-00;Name=Os10t0151650-00;Locus_id=Os10g0151650;Note=Hypothetical protein.;Transcript_evidence=tplb0044f04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0151650-00
Chr10	irgsp1_rep	five_prime_UTR	3096968	3097280	.	-	.	Parent=Os10t0151650-00
Chr10	irgsp1_rep	CDS	3096337	3096967	.	-	0	Parent=Os10t0151650-00
Chr10	irgsp1_rep	CDS	3092217	3092311	.	-	2	Parent=Os10t0151650-00
Chr10	irgsp1_rep	three_prime_UTR	3092159	3092216	.	-	.	Parent=Os10t0151650-00
Chr10	irgsp1_rep	three_prime_UTR	3090604	3091567	.	-	.	Parent=Os10t0151650-00
Chr10	irgsp1_rep	mRNA	3113841	3118873	.	-	.	ID=Os10t0151800-01;Name=Os10t0151800-01;Locus_id=Os10g0151800;Note=Similar to predicted protein.;Transcript_evidence=AK066347 (DDBJ%2C Best hit);ORF_evidence=B8BFR8 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013065B13;Expression=AK066347;TENOR=Os10t0151800-01;KEGG=Os10t0151800-01
Chr10	irgsp1_rep	five_prime_UTR	3118626	3118873	.	-	.	Parent=Os10t0151800-01
Chr10	irgsp1_rep	five_prime_UTR	3118448	3118462	.	-	.	Parent=Os10t0151800-01
Chr10	irgsp1_rep	CDS	3118037	3118447	.	-	0	Parent=Os10t0151800-01
Chr10	irgsp1_rep	CDS	3117834	3117950	.	-	0	Parent=Os10t0151800-01
Chr10	irgsp1_rep	CDS	3117607	3117747	.	-	0	Parent=Os10t0151800-01
Chr10	irgsp1_rep	CDS	3117340	3117525	.	-	0	Parent=Os10t0151800-01
Chr10	irgsp1_rep	CDS	3116453	3116657	.	-	0	Parent=Os10t0151800-01
Chr10	irgsp1_rep	CDS	3115988	3116244	.	-	2	Parent=Os10t0151800-01
Chr10	irgsp1_rep	three_prime_UTR	3114350	3115987	.	-	.	Parent=Os10t0151800-01
Chr10	irgsp1_rep	three_prime_UTR	3113841	3114257	.	-	.	Parent=Os10t0151800-01
Chr10	irgsp1_rep	mRNA	3122019	3127181	.	-	.	ID=Os10t0152000-00;Name=Os10t0152000-00;Locus_id=Os10g0152000;CGSNL Gene Symbol=WAK105;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 105;Oryzabase Gene Symbol Synonym(s)=OsWAK105%2C YK3;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK366431 (DDBJ);ORF_evidence=Q7XGR2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),EGF-like calcium-binding (IPR001881),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EGF-like calcium-binding%2C conserved site (IPR018097),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=6984;TENOR=Os10t0152000-00;KEGG=Os10t0152000-00
Chr10	irgsp1_rep	CDS	3126263	3127181	.	-	0	Parent=Os10t0152000-00
Chr10	irgsp1_rep	CDS	3123995	3124168	.	-	2	Parent=Os10t0152000-00
Chr10	irgsp1_rep	CDS	3122019	3123013	.	-	2	Parent=Os10t0152000-00
Chr10	irgsp1_rep	mRNA	3122025	3127180	.	+	.	ID=Os10t0152400-00;Name=Os10t0152400-00;Locus_id=Os10g0152400;Note=Hypothetical protein.;Transcript_evidence=tplb0044f04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0152400-00
Chr10	irgsp1_rep	five_prime_UTR	3122025	3123021	.	+	.	Parent=Os10t0152400-00
Chr10	irgsp1_rep	five_prime_UTR	3124005	3124142	.	+	.	Parent=Os10t0152400-00
Chr10	irgsp1_rep	five_prime_UTR	3126236	3126620	.	+	.	Parent=Os10t0152400-00
Chr10	irgsp1_rep	CDS	3126621	3127166	.	+	0	Parent=Os10t0152400-00
Chr10	irgsp1_rep	three_prime_UTR	3127167	3127180	.	+	.	Parent=Os10t0152400-00
Chr10	irgsp1_rep	mRNA	3133335	3134728	.	+	.	ID=Os10t0152801-01;Name=Os10t0152801-01;Locus_id=Os10g0152801;Note=Non-protein coding transcript.;Transcript_evidence=AK289033 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090091F24;TENOR=Os10t0152801-01
Chr10	irgsp1_rep	exon	3133335	3134728	.	+	.	Parent=Os10t0152801-01
Chr10	irgsp1_rep	mRNA	3341675	3342916	.	+	.	ID=Os10t0153900-01;Name=Os10t0153900-01;Locus_id=Os10g0153900;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK108455 (DDBJ%2C Best hit);ORF_evidence=A3C2M4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-143-D01;Expression=AK108455;TENOR=Os10t0153900-01;KEGG=Os10t0153900-01
Chr10	irgsp1_rep	five_prime_UTR	3341675	3341720	.	+	.	Parent=Os10t0153900-01
Chr10	irgsp1_rep	CDS	3341721	3342701	.	+	0	Parent=Os10t0153900-01
Chr10	irgsp1_rep	three_prime_UTR	3342702	3342916	.	+	.	Parent=Os10t0153900-01
Chr10	irgsp1_rep	mRNA	3358124	3360552	.	-	.	ID=Os10t0154000-01;Name=Os10t0154000-01;Locus_id=Os10g0154000;RAP-DB Gene Symbol Synonym(s)=OsVAMP714%2C VAMP714;RAP-DB Gene Name Synonym(s)=VESICLE-ASSOCIATED MEMBRANE PROTEIN 714%2C vesicle-associated membrane protein 714;CGSNL Gene Symbol=VAMP714;CGSNL Gene Name=VESICLE-ASSOCIATED MEMBRANE PROTEIN 714;Oryzabase Gene Symbol Synonym(s)=OsVAMP714;Oryzabase Gene Name Synonym(s)=vesicle-associated membrane protein 714;Note=Membrane-trafficking protein%2C Intracellular SNARE protein%2C Resistance to rice blast disease;Transcript_evidence=AK060093,AK065734;ORF_evidence=Q33B02;GO=Biological Process: transport (GO:0006810),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: integral component of membrane (GO:0016021);InterPro=Longin-like domain (IPR011012),Longin domain (IPR010908),Synaptobrevin (IPR001388);NIAS_FLcDNA=006-307-E10, J013036P17;Manual Curation=June 16%2C 2017;Literature_PMID=26879413;Oryzabase=21041;Expression=AK060093, AK065734;TENOR=Os10t0154000-01;KEGG=Os10t0154000-01;Subcellular location=Golgi apparatus (GO:0005794) [coleoptile cells], chloroplast (GO:0009507) [leaf mesophyll cells], vacuolar membrane (GO:0005774) [epidermal cells]
Chr10	irgsp1_rep	five_prime_UTR	3360314	3360552	.	-	.	Parent=Os10t0154000-01
Chr10	irgsp1_rep	CDS	3360079	3360313	.	-	0	Parent=Os10t0154000-01
Chr10	irgsp1_rep	CDS	3359606	3359796	.	-	2	Parent=Os10t0154000-01
Chr10	irgsp1_rep	CDS	3359349	3359512	.	-	0	Parent=Os10t0154000-01
Chr10	irgsp1_rep	CDS	3358445	3358535	.	-	1	Parent=Os10t0154000-01
Chr10	irgsp1_rep	three_prime_UTR	3358124	3358444	.	-	.	Parent=Os10t0154000-01
Chr10	irgsp1_rep	mRNA	3358062	3360518	.	-	.	ID=Os10t0154000-02;Name=Os10t0154000-02;Locus_id=Os10g0154000;CGSNL Gene Symbol=VAMP714;CGSNL Gene Name=VESICLE-ASSOCIATED MEMBRANE PROTEIN 714;Oryzabase Gene Symbol Synonym(s)=OsVAMP714;Oryzabase Gene Name Synonym(s)=vesicle-associated membrane protein 714;Note=Similar to vesicle-associated membrane protein 714.;Transcript_evidence=AK100212 (DDBJ%2C Best hit);ORF_evidence=NP_001149866.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: integral to membrane (GO:0016021);InterPro=Longin (IPR010908),Longin-like (IPR011012);NIAS_FLcDNA=J023043O11;Oryzabase=21041;Expression=AK100212;TENOR=Os10t0154000-02;KEGG=Os10t0154000-02
Chr10	irgsp1_rep	five_prime_UTR	3360314	3360518	.	-	.	Parent=Os10t0154000-02
Chr10	irgsp1_rep	CDS	3360020	3360313	.	-	0	Parent=Os10t0154000-02
Chr10	irgsp1_rep	three_prime_UTR	3359606	3360019	.	-	.	Parent=Os10t0154000-02
Chr10	irgsp1_rep	three_prime_UTR	3359349	3359512	.	-	.	Parent=Os10t0154000-02
Chr10	irgsp1_rep	three_prime_UTR	3358062	3358535	.	-	.	Parent=Os10t0154000-02
Chr10	irgsp1_rep	mRNA	3374000	3374881	.	+	.	ID=Os10t0154200-01;Name=Os10t0154200-01;Locus_id=Os10g0154200;Note=Conserved hypothetical protein.;Transcript_evidence=AK069896 (DDBJ%2C Best hit);ORF_evidence=Q7XM49 (UniProt);NIAS_FLcDNA=J023038J02;Expression=AK069896;TENOR=Os10t0154200-01;KEGG=Os10t0154200-01
Chr10	irgsp1_rep	five_prime_UTR	3374000	3374268	.	+	.	Parent=Os10t0154200-01
Chr10	irgsp1_rep	CDS	3374269	3374490	.	+	0	Parent=Os10t0154200-01
Chr10	irgsp1_rep	three_prime_UTR	3374491	3374881	.	+	.	Parent=Os10t0154200-01
Chr10	irgsp1_rep	mRNA	3386285	3389784	.	-	.	ID=Os10t0154401-01;Name=Os10t0154401-01;Locus_id=Os10g0154401;Note=Non-protein coding transcript.;Transcript_evidence=AK241872 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065218A20;TENOR=Os10t0154401-01
Chr10	irgsp1_rep	exon	3389016	3389784	.	-	.	Parent=Os10t0154401-01
Chr10	irgsp1_rep	exon	3388229	3388295	.	-	.	Parent=Os10t0154401-01
Chr10	irgsp1_rep	exon	3386285	3386553	.	-	.	Parent=Os10t0154401-01
Chr10	irgsp1_rep	mRNA	3393943	3394920	.	-	.	ID=Os10t0154500-00;Name=Os10t0154500-00;Locus_id=Os10g0154500;Note=Similar to cDNA%2C clone: J075187A19%2C full insert sequence.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001064186.2 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os10t0154500-00;KEGG=Os10t0154500-00
Chr10	irgsp1_rep	CDS	3393943	3394920	.	-	0	Parent=Os10t0154500-00
Chr10	irgsp1_rep	mRNA	3397799	3398404	.	-	.	ID=Os10t0154533-00;Name=Os10t0154533-00;Locus_id=Os10g0154533;Note=Similar to acetyltransferase%2C GNAT family protein.;Transcript_evidence=AK365777 (DDBJ);ORF_evidence=NP_001147661.1 (RefSeq);TENOR=Os10t0154533-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	3397799	3398404	.	-	0	Parent=Os10t0154533-00
Chr10	irgsp1_rep	mRNA	3403423	3404719	.	+	.	ID=Os10t0154566-00;Name=Os10t0154566-00;Locus_id=Os10g0154566;Note=Hypothetical conserved gene.;Transcript_evidence=EU976862 (DDBJ);ORF_evidence=Q8S666 (UniProt);TENOR=Os10t0154566-00;KEGG=Os10t0154566-00
Chr10	irgsp1_rep	CDS	3403423	3403599	.	+	0	Parent=Os10t0154566-00
Chr10	irgsp1_rep	CDS	3403681	3403854	.	+	0	Parent=Os10t0154566-00
Chr10	irgsp1_rep	CDS	3404591	3404719	.	+	0	Parent=Os10t0154566-00
Chr10	irgsp1_rep	mRNA	3428231	3432416	.	+	.	ID=Os10t0154600-01;Name=Os10t0154600-01;Locus_id=Os10g0154600;Note=Conserved hypothetical protein.;Transcript_evidence=AK064417 (DDBJ%2C Best hit);ORF_evidence=Q33AZ7 (UniProt);NIAS_FLcDNA=002-110-B03;Expression=AK064417;TENOR=Os10t0154600-01;KEGG=Os10t0154600-01
Chr10	irgsp1_rep	five_prime_UTR	3428231	3428231	.	+	.	Parent=Os10t0154600-01
Chr10	irgsp1_rep	CDS	3428232	3428324	.	+	0	Parent=Os10t0154600-01
Chr10	irgsp1_rep	CDS	3428657	3430195	.	+	0	Parent=Os10t0154600-01
Chr10	irgsp1_rep	CDS	3431517	3431724	.	+	0	Parent=Os10t0154600-01
Chr10	irgsp1_rep	CDS	3431861	3431961	.	+	2	Parent=Os10t0154600-01
Chr10	irgsp1_rep	three_prime_UTR	3431962	3432416	.	+	.	Parent=Os10t0154600-01
Chr10	irgsp1_rep	mRNA	3438474	3439397	.	+	.	ID=Os10t0154700-01;Name=Os10t0154700-01;Locus_id=Os10g0154700;CGSNL Gene Symbol=CYP18-4;CGSNL Gene Name=CYCLOPHILIN 18-4;Oryzabase Gene Symbol Synonym(s)=OsCYP18-4%2C OsCYP-26%2C OsCYP18-3;Oryzabase Gene Name Synonym(s)=cyclophilin 18-4%2C cyclophilin 26;Note=Similar to Cyclophilin Dicyp-2.;Transcript_evidence=AK058898 (DDBJ%2C Best hit);ORF_evidence=A2Z550 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);InterPro=Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type (IPR002130),Cyclophilin-like (IPR015891),Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type%2C conserved site (IPR020892);NIAS_FLcDNA=001-007-H03;Oryzabase=10056;Expression=AK058898;TENOR=Os10t0154700-01;KEGG=Os10t0154700-01 (EC:5.2.1.8)
Chr10	irgsp1_rep	five_prime_UTR	3438474	3438592	.	+	.	Parent=Os10t0154700-01
Chr10	irgsp1_rep	CDS	3438593	3439138	.	+	0	Parent=Os10t0154700-01
Chr10	irgsp1_rep	three_prime_UTR	3439139	3439397	.	+	.	Parent=Os10t0154700-01
Chr10	irgsp1_rep	mRNA	3446108	3446808	.	+	.	ID=Os10t0154900-00;Name=Os10t0154900-00;Locus_id=Os10g0154900;CGSNL Gene Symbol=CYP124;CGSNL Gene Name=CYCLOPHILIN 124;Oryzabase Gene Symbol Synonym(s)=OsCYP124;Oryzabase Gene Name Synonym(s)=cyclophilin 124;Note=Similar to Peptidyl-prolyl cis-trans isomerase.;Transcript_evidence=L13365 (DDBJ);ORF_evidence=A2Z550 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);InterPro=Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type (IPR002130),Cyclophilin-like (IPR015891);Oryzabase=19049;TENOR=Os10t0154900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	3446108	3446319	.	+	.	Parent=Os10t0154900-00
Chr10	irgsp1_rep	five_prime_UTR	3446453	3446495	.	+	.	Parent=Os10t0154900-00
Chr10	irgsp1_rep	CDS	3446496	3446774	.	+	0	Parent=Os10t0154900-00
Chr10	irgsp1_rep	three_prime_UTR	3446775	3446808	.	+	.	Parent=Os10t0154900-00
Chr10	irgsp1_rep	mRNA	3462828	3464263	.	+	.	ID=Os10t0155100-01;Name=Os10t0155100-01;Locus_id=Os10g0155100;Note=Curculin-like (mannose-binding) lectin domain containing protein.;Transcript_evidence=AK108770 (DDBJ%2C Best hit);ORF_evidence=C8XPR9 (UniProt);GO=Molecular Function: sugar binding (GO:0005529);InterPro=Bulb-type lectin domain (IPR001480);NIAS_FLcDNA=002-150-H05;Expression=AK108770;TENOR=Os10t0155100-01;KEGG=Os10t0155100-01
Chr10	irgsp1_rep	five_prime_UTR	3462828	3462901	.	+	.	Parent=Os10t0155100-01
Chr10	irgsp1_rep	CDS	3462902	3464026	.	+	0	Parent=Os10t0155100-01
Chr10	irgsp1_rep	three_prime_UTR	3464027	3464263	.	+	.	Parent=Os10t0155100-01
Chr10	irgsp1_rep	mRNA	3464548	3464901	.	-	.	ID=Os10t0155200-00;Name=Os10t0155200-00;Locus_id=Os10g0155200;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7G6D8 (UniProt);TENOR=Os10t0155200-00;KEGG=Os10t0155200-00
Chr10	irgsp1_rep	CDS	3464548	3464901	.	-	0	Parent=Os10t0155200-00
Chr10	irgsp1_rep	mRNA	3468006	3469312	.	+	.	ID=Os10t0155300-01;Name=Os10t0155300-01;Locus_id=Os10g0155300;Oryzabase Gene Symbol Synonym(s)=OsFbox539%2C Os_F0316;Oryzabase Gene Name Synonym(s)=F-box protein 539;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK070930 (DDBJ%2C Best hit);ORF_evidence=A2Z554 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023074M13;Oryzabase=17308;Expression=AK070930;TENOR=Os10t0155300-01;KEGG=Os10t0155300-01
Chr10	irgsp1_rep	five_prime_UTR	3468006	3468055	.	+	.	Parent=Os10t0155300-01
Chr10	irgsp1_rep	CDS	3468056	3469195	.	+	0	Parent=Os10t0155300-01
Chr10	irgsp1_rep	three_prime_UTR	3469196	3469312	.	+	.	Parent=Os10t0155300-01
Chr10	irgsp1_rep	mRNA	3472050	3475176	.	+	.	ID=Os10t0155400-00;Name=Os10t0155400-00;Locus_id=Os10g0155400;Note=Similar to Amidase family protein%2C expressed.;Transcript_evidence=AK353583 (DDBJ);ORF_evidence=Q7G6E7 (UniProt);GO=Molecular Function: carbon-nitrogen ligase activity%2C with glutamine as amido-N-donor (GO:0016884);InterPro=Amidase (IPR000120),Amidase signature domain (IPR023631);TENOR=Os10t0155400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	3472050	3472706	.	+	0	Parent=Os10t0155400-00
Chr10	irgsp1_rep	CDS	3472835	3473049	.	+	0	Parent=Os10t0155400-00
Chr10	irgsp1_rep	CDS	3473581	3473826	.	+	1	Parent=Os10t0155400-00
Chr10	irgsp1_rep	CDS	3474544	3474544	.	+	1	Parent=Os10t0155400-00
Chr10	irgsp1_rep	three_prime_UTR	3474545	3474738	.	+	.	Parent=Os10t0155400-00
Chr10	irgsp1_rep	three_prime_UTR	3474822	3475176	.	+	.	Parent=Os10t0155400-00
Chr10	irgsp1_rep	mRNA	3472145	3473747	.	-	.	ID=Os10t0155450-00;Name=Os10t0155450-00;Locus_id=Os10g0155450;Note=Hypothetical protein.;Transcript_evidence=AK335244 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0155450-00
Chr10	irgsp1_rep	five_prime_UTR	3473430	3473747	.	-	.	Parent=Os10t0155450-00
Chr10	irgsp1_rep	five_prime_UTR	3472948	3473116	.	-	.	Parent=Os10t0155450-00
Chr10	irgsp1_rep	CDS	3472858	3472947	.	-	0	Parent=Os10t0155450-00
Chr10	irgsp1_rep	CDS	3472316	3472726	.	-	0	Parent=Os10t0155450-00
Chr10	irgsp1_rep	three_prime_UTR	3472145	3472315	.	-	.	Parent=Os10t0155450-00
Chr10	irgsp1_rep	mRNA	3475597	3478195	.	-	.	ID=Os10t0155500-01;Name=Os10t0155500-01;Locus_id=Os10g0155500;Note=Similar to Aldose 1-epimerase-like protein.;Transcript_evidence=AK121800 (DDBJ%2C Best hit);ORF_evidence=B4FPM2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: hexose metabolic process (GO:0019318),Molecular Function: catalytic activity (GO:0003824),Molecular Function: isomerase activity (GO:0016853),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Aldose 1-epimerase (IPR008183),Glycoside hydrolase-type carbohydrate-binding (IPR011013),Glycoside hydrolase-type carbohydrate-binding%2C subgroup (IPR014718),Aldose 1-epimerase%2C subgroup (IPR015443);NIAS_FLcDNA=J033096P07;Expression=AK121800;TENOR=Os10t0155500-01;KEGG=Os10t0155500-01 (EC:5.1.3.3)
Chr10	irgsp1_rep	five_prime_UTR	3478185	3478195	.	-	.	Parent=Os10t0155500-01
Chr10	irgsp1_rep	CDS	3477995	3478184	.	-	0	Parent=Os10t0155500-01
Chr10	irgsp1_rep	CDS	3477819	3477868	.	-	2	Parent=Os10t0155500-01
Chr10	irgsp1_rep	CDS	3476819	3476945	.	-	0	Parent=Os10t0155500-01
Chr10	irgsp1_rep	CDS	3476553	3476654	.	-	2	Parent=Os10t0155500-01
Chr10	irgsp1_rep	CDS	3475837	3476456	.	-	2	Parent=Os10t0155500-01
Chr10	irgsp1_rep	three_prime_UTR	3475597	3475836	.	-	.	Parent=Os10t0155500-01
Chr10	irgsp1_rep	mRNA	3500868	3501538	.	-	.	ID=Os10t0155600-00;Name=Os10t0155600-00;Locus_id=Os10g0155600;Note=Hypothetical protein.;Transcript_evidence=BT085651 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0155600-00
Chr10	irgsp1_rep	five_prime_UTR	3501459	3501538	.	-	.	Parent=Os10t0155600-00
Chr10	irgsp1_rep	CDS	3500868	3501458	.	-	0	Parent=Os10t0155600-00
Chr10	irgsp1_rep	mRNA	3501258	3504118	.	+	.	ID=Os10t0155700-00;Name=Os10t0155700-00;Locus_id=Os10g0155700;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G7K5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os10t0155700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	3501258	3503670	.	+	0	Parent=Os10t0155700-00
Chr10	irgsp1_rep	CDS	3503757	3504118	.	+	2	Parent=Os10t0155700-00
Chr10	irgsp1_rep	mRNA	3516023	3518646	.	+	.	ID=Os10t0155800-01;Name=Os10t0155800-01;Locus_id=Os10g0155800;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK120029 (DDBJ%2C Best hit);ORF_evidence=Q8SB68 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-186-D05;Expression=AK120029;TENOR=Os10t0155800-01;KEGG=Os10t0155800-01
Chr10	irgsp1_rep	CDS	3516023	3517967	.	+	0	Parent=Os10t0155800-01
Chr10	irgsp1_rep	CDS	3518055	3518383	.	+	2	Parent=Os10t0155800-01
Chr10	irgsp1_rep	three_prime_UTR	3518384	3518646	.	+	.	Parent=Os10t0155800-01
Chr10	irgsp1_rep	mRNA	3525791	3526410	.	-	.	ID=Os10t0155900-00;Name=Os10t0155900-00;Locus_id=Os10g0155900;Note=Similar to Protein kinase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XGN3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os10t0155900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	3526178	3526410	.	-	0	Parent=Os10t0155900-00
Chr10	irgsp1_rep	CDS	3525791	3525974	.	-	1	Parent=Os10t0155900-00
Chr10	irgsp1_rep	mRNA	3538288	3538890	.	+	.	ID=Os10t0156200-00;Name=Os10t0156200-00;Locus_id=Os10g0156200;Note=Similar to Protein kinase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XGN3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os10t0156200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	3538288	3538890	.	+	0	Parent=Os10t0156200-00
Chr10	irgsp1_rep	mRNA	3541288	3541727	.	+	.	ID=Os10t0156300-01;Name=Os10t0156300-01;Locus_id=Os10g0156300;Note=Hypothetical conserved gene.;Transcript_evidence=AK121576 (DDBJ%2C Best hit);ORF_evidence=Q2R2R5 (UniProt);NIAS_FLcDNA=J033036H24;Expression=AK121576;TENOR=Os10t0156300-01;KEGG=Os10t0156300-01
Chr10	irgsp1_rep	five_prime_UTR	3541288	3541405	.	+	.	Parent=Os10t0156300-01
Chr10	irgsp1_rep	CDS	3541406	3541564	.	+	0	Parent=Os10t0156300-01
Chr10	irgsp1_rep	three_prime_UTR	3541565	3541727	.	+	.	Parent=Os10t0156300-01
Chr10	irgsp1_rep	mRNA	3587533	3588261	.	+	.	ID=Os10t0156800-00;Name=Os10t0156800-00;Locus_id=Os10g0156800;Note=Similar to 163k15.5.;Transcript_evidence=EU946950 (DDBJ);ORF_evidence=Q8S457 (UniProt);TENOR=Os10t0156800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	3587533	3588261	.	+	0	Parent=Os10t0156800-00
Chr10	irgsp1_rep	mRNA	3611964	3613259	.	+	.	ID=Os10t0157200-00;Name=Os10t0157200-00;Locus_id=Os10g0157200;CGSNL Gene Symbol=CDKF2;CGSNL Gene Name=CYCLIN-DEPENDENT KINASE F2;Oryzabase Gene Symbol Synonym(s)=OsCDKF2;Oryzabase Gene Name Synonym(s)=cyclin-dependent kinase F-2;Note=Similar to Protein kinase domain containing protein.;Transcript_evidence=AK374420 (DDBJ);ORF_evidence=Q7XGN3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=22691;TENOR=Os10t0157200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	3611964	3613259	.	+	0	Parent=Os10t0157200-00
Chr10	irgsp1_rep	mRNA	3617680	3618134	.	+	.	ID=Os10t0157300-01;Name=Os10t0157300-01;Locus_id=Os10g0157300;Note=Hypothetical gene.;Transcript_evidence=AK111040 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-175-B03;Expression=AK111040;TENOR=Os10t0157300-01;KEGG=Os10t0157300-01
Chr10	irgsp1_rep	five_prime_UTR	3617680	3617685	.	+	.	Parent=Os10t0157300-01
Chr10	irgsp1_rep	CDS	3617686	3617907	.	+	0	Parent=Os10t0157300-01
Chr10	irgsp1_rep	three_prime_UTR	3617908	3618134	.	+	.	Parent=Os10t0157300-01
Chr10	irgsp1_rep	mRNA	3620315	3621603	.	-	.	ID=Os10t0157400-01;Name=Os10t0157400-01;Locus_id=Os10g0157400;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK242271 (DDBJ%2C Best hit);ORF_evidence=NP_001176031.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J075187A19;TENOR=Os10t0157400-01;KEGG=Os10t0157400-01
Chr10	irgsp1_rep	five_prime_UTR	3621546	3621603	.	-	.	Parent=Os10t0157400-01
Chr10	irgsp1_rep	CDS	3620562	3621545	.	-	0	Parent=Os10t0157400-01
Chr10	irgsp1_rep	three_prime_UTR	3620315	3620561	.	-	.	Parent=Os10t0157400-01
Chr10	irgsp1_rep	mRNA	3651182	3653501	.	+	.	ID=Os10t0158000-01;Name=Os10t0158000-01;Locus_id=Os10g0158000;Note=Hypothetical conserved gene.;Transcript_evidence=AK065387 (DDBJ%2C Best hit);ORF_evidence=NP_001052159.1 (RefSeq);NIAS_FLcDNA=J013021P08;Expression=AK065387;TENOR=Os10t0158000-01;KEGG=Os10t0158000-01
Chr10	irgsp1_rep	five_prime_UTR	3651182	3651903	.	+	.	Parent=Os10t0158000-01
Chr10	irgsp1_rep	five_prime_UTR	3652004	3652163	.	+	.	Parent=Os10t0158000-01
Chr10	irgsp1_rep	five_prime_UTR	3652263	3652544	.	+	.	Parent=Os10t0158000-01
Chr10	irgsp1_rep	five_prime_UTR	3652714	3652879	.	+	.	Parent=Os10t0158000-01
Chr10	irgsp1_rep	CDS	3652880	3653107	.	+	0	Parent=Os10t0158000-01
Chr10	irgsp1_rep	three_prime_UTR	3653108	3653501	.	+	.	Parent=Os10t0158000-01
Chr10	irgsp1_rep	mRNA	3696797	3698817	.	+	.	ID=Os10t0158400-01;Name=Os10t0158400-01;Locus_id=Os10g0158400;RAP-DB Gene Symbol Synonym(s)=ARAS1;RAP-DB Gene Name Synonym(s)=alkylresorcylic acid synthase 1;CGSNL Gene Symbol=PKS16;CGSNL Gene Name=POLYKETIDE SYNTHASE 16;Oryzabase Gene Symbol Synonym(s)=OsPKS16%2C OsCHS16%2C CHS16;Oryzabase Gene Name Synonym(s)=polyketide synthase 16%2C Chalcone synthase 16;Note=Type III polyketide synthase;Transcript_evidence=AK375015 (domesticated barley);ORF_evidence=Q7XGM8;GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Thiolase-like (IPR016039),Polyketide synthase%2C type III (IPR011141),Chalcone/stilbene synthase%2C N-terminal (IPR001099),Chalcone/stilbene synthase%2C C-terminal (IPR012328);Manual Curation=October 1%2C 2020;Literature_PMID=20451227;Oryzabase=21564;TENOR=Os10t0158400-00
Chr10	irgsp1_rep	CDS	3696797	3696992	.	+	0	Parent=Os10t0158400-01
Chr10	irgsp1_rep	CDS	3697774	3698774	.	+	2	Parent=Os10t0158400-01
Chr10	irgsp1_rep	three_prime_UTR	3698775	3698817	.	+	.	Parent=Os10t0158400-01
Chr10	irgsp1_rep	mRNA	3697742	3698655	.	-	.	ID=Os10t0158475-00;Name=Os10t0158475-00;Locus_id=Os10g0158475;Note=Hypothetical protein.;Transcript_evidence=EU966441 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0158475-00
Chr10	irgsp1_rep	five_prime_UTR	3698354	3698655	.	-	.	Parent=Os10t0158475-00
Chr10	irgsp1_rep	CDS	3697988	3698353	.	-	0	Parent=Os10t0158475-00
Chr10	irgsp1_rep	three_prime_UTR	3697742	3697987	.	-	.	Parent=Os10t0158475-00
Chr10	irgsp1_rep	mRNA	3712160	3712439	.	+	.	ID=Os10t0158550-00;Name=Os10t0158550-00;Locus_id=Os10g0158550;Note=Non-protein coding transcript.;Transcript_evidence=EU943544 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0158550-00
Chr10	irgsp1_rep	exon	3712160	3712439	.	+	.	Parent=Os10t0158550-00
Chr10	irgsp1_rep	mRNA	3716418	3717249	.	+	.	ID=Os10t0158625-00;Name=Os10t0158625-00;Locus_id=Os10g0158625;Note=Putative B3 domain-containing protein Os10g0158600.;Transcript_evidence=Q7XGM6 (UniProt);ORF_evidence=Q7XGM6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);TENOR=Os10t0158625-00
Chr10	irgsp1_rep	CDS	3716418	3716474	.	+	0	Parent=Os10t0158625-00
Chr10	irgsp1_rep	CDS	3716555	3716936	.	+	0	Parent=Os10t0158625-00
Chr10	irgsp1_rep	CDS	3717182	3717249	.	+	2	Parent=Os10t0158625-00
Chr10	irgsp1_rep	mRNA	3727965	3730348	.	+	.	ID=Os10t0158700-01;Name=Os10t0158700-01;Locus_id=Os10g0158700;Note=Conserved hypothetical protein.;Transcript_evidence=AK106884 (DDBJ%2C Best hit);ORF_evidence=Q94GT1 (UniProt);NIAS_FLcDNA=002-118-F07;Expression=AK106884;TENOR=Os10t0158700-01;KEGG=Os10t0158700-01
Chr10	irgsp1_rep	CDS	3727965	3729176	.	+	0	Parent=Os10t0158700-01
Chr10	irgsp1_rep	three_prime_UTR	3729177	3729177	.	+	.	Parent=Os10t0158700-01
Chr10	irgsp1_rep	three_prime_UTR	3729985	3730348	.	+	.	Parent=Os10t0158700-01
Chr10	irgsp1_rep	mRNA	3741004	3743910	.	-	.	ID=Os10t0159033-01;Name=Os10t0159033-01;Locus_id=Os10g0159033;Note=Conserved hypothetical protein.;Transcript_evidence=AK241655 (DDBJ%2C Best hit);ORF_evidence=NP_001176033.1 (RefSeq);NIAS_FLcDNA=J065191E20;TENOR=Os10t0159033-01;KEGG=Os10t0159033-01
Chr10	irgsp1_rep	five_prime_UTR	3743718	3743910	.	-	.	Parent=Os10t0159033-01
Chr10	irgsp1_rep	CDS	3743444	3743717	.	-	0	Parent=Os10t0159033-01
Chr10	irgsp1_rep	CDS	3742239	3742325	.	-	2	Parent=Os10t0159033-01
Chr10	irgsp1_rep	CDS	3741277	3741290	.	-	2	Parent=Os10t0159033-01
Chr10	irgsp1_rep	three_prime_UTR	3741004	3741276	.	-	.	Parent=Os10t0159033-01
Chr10	irgsp1_rep	mRNA	3750178	3752622	.	-	.	ID=Os10t0159167-01;Name=Os10t0159167-01;Locus_id=Os10g0159167;Note=Hypothetical gene.;Transcript_evidence=AK241999 (DDBJ%2C Best hit);ORF_evidence=NP_001175714.1 (RefSeq);NIAS_FLcDNA=J075100L03;TENOR=Os10t0159167-01
Chr10	irgsp1_rep	five_prime_UTR	3752477	3752622	.	-	.	Parent=Os10t0159167-01
Chr10	irgsp1_rep	CDS	3752095	3752476	.	-	0	Parent=Os10t0159167-01
Chr10	irgsp1_rep	CDS	3751577	3751662	.	-	2	Parent=Os10t0159167-01
Chr10	irgsp1_rep	three_prime_UTR	3750178	3751576	.	-	.	Parent=Os10t0159167-01
Chr10	irgsp1_rep	mRNA	3753397	3757307	.	-	.	ID=Os10t0159300-01;Name=Os10t0159300-01;Locus_id=Os10g0159300;Note=Conserved hypothetical protein.;Transcript_evidence=AK070752 (DDBJ%2C Best hit);ORF_evidence=Q7G758 (UniProt);NIAS_FLcDNA=J023064N19;TENOR=Os10t0159300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	3757129	3757307	.	-	.	Parent=Os10t0159300-01
Chr10	irgsp1_rep	five_prime_UTR	3755308	3756348	.	-	.	Parent=Os10t0159300-01
Chr10	irgsp1_rep	CDS	3755176	3755307	.	-	0	Parent=Os10t0159300-01
Chr10	irgsp1_rep	three_prime_UTR	3753397	3755175	.	-	.	Parent=Os10t0159300-01
Chr10	irgsp1_rep	mRNA	3755331	3757268	.	-	.	ID=Os10t0159300-02;Name=Os10t0159300-02;Locus_id=Os10g0159300;Note=Conserved hypothetical protein.;Transcript_evidence=AK121327 (DDBJ%2C Best hit);ORF_evidence=NP_001172974.1 (RefSeq);NIAS_FLcDNA=J023117H21;Expression=AK121327;TENOR=Os10t0159300-02;KEGG=Os10t0159300-02
Chr10	irgsp1_rep	five_prime_UTR	3757129	3757268	.	-	.	Parent=Os10t0159300-02
Chr10	irgsp1_rep	five_prime_UTR	3756302	3756348	.	-	.	Parent=Os10t0159300-02
Chr10	irgsp1_rep	CDS	3756300	3756301	.	-	0	Parent=Os10t0159300-02
Chr10	irgsp1_rep	CDS	3755457	3755604	.	-	1	Parent=Os10t0159300-02
Chr10	irgsp1_rep	three_prime_UTR	3755331	3755456	.	-	.	Parent=Os10t0159300-02
Chr10	irgsp1_rep	mRNA	3779650	3781617	.	-	.	ID=Os10t0159600-01;Name=Os10t0159600-01;Locus_id=Os10g0159600;Note=Heat shock protein Hsp20 domain containing protein.;Transcript_evidence=AK064267 (DDBJ%2C Best hit);ORF_evidence=B8BFT1 (UniProt);InterPro=Heat shock protein Hsp20 (IPR002068),HSP20-like chaperone (IPR008978);NIAS_FLcDNA=002-105-E01;Oryzabase=20215;Expression=AK064267;TENOR=Os10t0159600-01;KEGG=Os10t0159600-01
Chr10	irgsp1_rep	five_prime_UTR	3781563	3781617	.	-	.	Parent=Os10t0159600-01
Chr10	irgsp1_rep	five_prime_UTR	3781434	3781455	.	-	.	Parent=Os10t0159600-01
Chr10	irgsp1_rep	CDS	3781211	3781433	.	-	0	Parent=Os10t0159600-01
Chr10	irgsp1_rep	CDS	3779827	3780677	.	-	2	Parent=Os10t0159600-01
Chr10	irgsp1_rep	three_prime_UTR	3779650	3779826	.	-	.	Parent=Os10t0159600-01
Chr10	irgsp1_rep	mRNA	3785717	3787397	.	-	.	ID=Os10t0159700-01;Name=Os10t0159700-01;Locus_id=Os10g0159700;Oryzabase Gene Symbol Synonym(s)=OsCIA;Oryzabase Gene Name Synonym(s)=cold-induced anther protein;Note=Heat shock protein Hsp20 domain containing protein.;Transcript_evidence=AK107162 (DDBJ%2C Best hit);ORF_evidence=Q45TD8 (UniProt);InterPro=Heat shock protein Hsp20 (IPR002068),HSP20-like chaperone (IPR008978);NIAS_FLcDNA=002-124-F03;Oryzabase=14094;Expression=AK107162;TENOR=Os10t0159700-01;KEGG=Os10t0159700-01
Chr10	irgsp1_rep	five_prime_UTR	3787291	3787397	.	-	.	Parent=Os10t0159700-01
Chr10	irgsp1_rep	CDS	3787086	3787290	.	-	0	Parent=Os10t0159700-01
Chr10	irgsp1_rep	CDS	3785959	3786347	.	-	2	Parent=Os10t0159700-01
Chr10	irgsp1_rep	three_prime_UTR	3785717	3785958	.	-	.	Parent=Os10t0159700-01
Chr10	irgsp1_rep	mRNA	3794206	3803819	.	-	.	ID=Os10t0159800-01;Name=Os10t0159800-01;Locus_id=Os10g0159800;Note=Alcohol dehydrogenase superfamily%2C zinc-containing protein.;Transcript_evidence=AK104537 (DDBJ%2C Best hit),AK061577 (DDBJ%2C Best hit),AK065882 (DDBJ%2C Best hit);ORF_evidence=B6TDN5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),Alcohol dehydrogenase%2C zinc-type%2C conserved site (IPR002328),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=006-304-G02,006-311-G11,J013048H02;Expression=AK104537;TENOR=Os10t0159800-01;KEGG=Os10t0159800-01 (EC:1.1.1.1%2C EC:1.1.1.284)
Chr10	irgsp1_rep	five_prime_UTR	3803769	3803819	.	-	.	Parent=Os10t0159800-01
Chr10	irgsp1_rep	CDS	3803684	3803768	.	-	0	Parent=Os10t0159800-01
Chr10	irgsp1_rep	CDS	3803398	3803534	.	-	2	Parent=Os10t0159800-01
Chr10	irgsp1_rep	CDS	3803056	3803105	.	-	0	Parent=Os10t0159800-01
Chr10	irgsp1_rep	CDS	3801448	3801791	.	-	1	Parent=Os10t0159800-01
Chr10	irgsp1_rep	CDS	3800198	3800280	.	-	2	Parent=Os10t0159800-01
Chr10	irgsp1_rep	CDS	3799942	3800017	.	-	0	Parent=Os10t0159800-01
Chr10	irgsp1_rep	CDS	3794948	3795009	.	-	2	Parent=Os10t0159800-01
Chr10	irgsp1_rep	CDS	3794750	3794845	.	-	0	Parent=Os10t0159800-01
Chr10	irgsp1_rep	CDS	3794468	3794629	.	-	0	Parent=Os10t0159800-01
Chr10	irgsp1_rep	CDS	3794266	3794382	.	-	0	Parent=Os10t0159800-01
Chr10	irgsp1_rep	three_prime_UTR	3794206	3794265	.	-	.	Parent=Os10t0159800-01
Chr10	irgsp1_rep	mRNA	3799471	3803817	.	-	.	ID=Os10t0159800-03;Name=Os10t0159800-03;Locus_id=Os10g0159800;Note=Similar to Alcohol dehydrogenase 2.;Transcript_evidence=AK061007 (DDBJ%2C Best hit);ORF_evidence=B6TDN5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),Alcohol dehydrogenase%2C zinc-type%2C conserved site (IPR002328),GroES-like (IPR011032),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=006-204-A07;Expression=AK061007;TENOR=Os10t0159800-03;KEGG=Os10t0159800-03 (EC:1.1.1.1%2C EC:1.1.1.284)
Chr10	irgsp1_rep	five_prime_UTR	3803769	3803817	.	-	.	Parent=Os10t0159800-03
Chr10	irgsp1_rep	CDS	3803684	3803768	.	-	0	Parent=Os10t0159800-03
Chr10	irgsp1_rep	CDS	3803398	3803534	.	-	2	Parent=Os10t0159800-03
Chr10	irgsp1_rep	CDS	3803056	3803105	.	-	0	Parent=Os10t0159800-03
Chr10	irgsp1_rep	CDS	3801448	3801791	.	-	1	Parent=Os10t0159800-03
Chr10	irgsp1_rep	CDS	3800198	3800280	.	-	2	Parent=Os10t0159800-03
Chr10	irgsp1_rep	CDS	3799880	3800017	.	-	0	Parent=Os10t0159800-03
Chr10	irgsp1_rep	three_prime_UTR	3799471	3799879	.	-	.	Parent=Os10t0159800-03
Chr10	irgsp1_rep	mRNA	3793940	3803107	.	-	.	ID=Os10t0159800-04;Name=Os10t0159800-04;Locus_id=Os10g0159800;Note=Similar to Alcohol dehydrogenase 2.;Transcript_evidence=AK060781 (DDBJ%2C Best hit);ORF_evidence=B6TDN5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),Alcohol dehydrogenase%2C zinc-type%2C conserved site (IPR002328),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-033-C06;Expression=AK060781;TENOR=Os10t0159800-04;KEGG=Os10t0159800-04 (EC:1.1.1.1%2C EC:1.1.1.284)
Chr10	irgsp1_rep	five_prime_UTR	3803106	3803107	.	-	.	Parent=Os10t0159800-04
Chr10	irgsp1_rep	CDS	3803056	3803105	.	-	0	Parent=Os10t0159800-04
Chr10	irgsp1_rep	CDS	3801448	3801791	.	-	1	Parent=Os10t0159800-04
Chr10	irgsp1_rep	CDS	3800198	3800280	.	-	2	Parent=Os10t0159800-04
Chr10	irgsp1_rep	CDS	3799942	3800017	.	-	0	Parent=Os10t0159800-04
Chr10	irgsp1_rep	CDS	3794948	3795009	.	-	2	Parent=Os10t0159800-04
Chr10	irgsp1_rep	CDS	3794750	3794845	.	-	0	Parent=Os10t0159800-04
Chr10	irgsp1_rep	CDS	3794468	3794629	.	-	0	Parent=Os10t0159800-04
Chr10	irgsp1_rep	CDS	3794266	3794382	.	-	0	Parent=Os10t0159800-04
Chr10	irgsp1_rep	three_prime_UTR	3793940	3794265	.	-	.	Parent=Os10t0159800-04
Chr10	irgsp1_rep	mRNA	3831561	3841402	.	-	.	ID=Os10t0160000-01;Name=Os10t0160000-01;Locus_id=Os10g0160000;CGSNL Gene Symbol=UBP4-4;CGSNL Gene Name=UBIQUITIN-SPECIFIC PROCESSING PROTEASE 4-4;Oryzabase Gene Symbol Synonym(s)=OsUBP4-4%2C OsUBP9%2C UBP9;Oryzabase Gene Name Synonym(s)=ubiquitin-specific processing protease 4-4%2C Ubiquitin-specific protease 9;Note=Similar to Ubiquitin carboxyl-terminal hydrolase 12 (EC 3.1.2.15) (Ubiquitin thiolesterase 12) (Ubiquitin-specific processing protease 12) (Deubiquitinating enzyme 12).;Transcript_evidence=AK111889 (DDBJ%2C Best hit);ORF_evidence=C5WND1 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Molecular Function: ubiquitin thiolesterase activity (GO:0004221);InterPro=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (IPR001394),Peptidase C19%2C ubiquitin-specific peptidase%2C DUSP domain (IPR006615),Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2%2C conserved site (IPR018200);NIAS_FLcDNA=J033072M05;Oryzabase=22879;Expression=AK111889;TENOR=Os10t0160000-01;KEGG=Os10t0160000-01 (EC:3.1.2.15)
Chr10	irgsp1_rep	five_prime_UTR	3841247	3841402	.	-	.	Parent=Os10t0160000-01
Chr10	irgsp1_rep	CDS	3841098	3841246	.	-	0	Parent=Os10t0160000-01
Chr10	irgsp1_rep	CDS	3840288	3840512	.	-	1	Parent=Os10t0160000-01
Chr10	irgsp1_rep	CDS	3839592	3839736	.	-	1	Parent=Os10t0160000-01
Chr10	irgsp1_rep	CDS	3838707	3838766	.	-	0	Parent=Os10t0160000-01
Chr10	irgsp1_rep	CDS	3838514	3838609	.	-	0	Parent=Os10t0160000-01
Chr10	irgsp1_rep	CDS	3837549	3837941	.	-	0	Parent=Os10t0160000-01
Chr10	irgsp1_rep	CDS	3837329	3837469	.	-	0	Parent=Os10t0160000-01
Chr10	irgsp1_rep	CDS	3835851	3836021	.	-	0	Parent=Os10t0160000-01
Chr10	irgsp1_rep	CDS	3833832	3834089	.	-	0	Parent=Os10t0160000-01
Chr10	irgsp1_rep	CDS	3833594	3833739	.	-	0	Parent=Os10t0160000-01
Chr10	irgsp1_rep	CDS	3832724	3833281	.	-	1	Parent=Os10t0160000-01
Chr10	irgsp1_rep	CDS	3832334	3832607	.	-	1	Parent=Os10t0160000-01
Chr10	irgsp1_rep	CDS	3832049	3832228	.	-	0	Parent=Os10t0160000-01
Chr10	irgsp1_rep	three_prime_UTR	3831561	3832048	.	-	.	Parent=Os10t0160000-01
Chr10	irgsp1_rep	mRNA	3837147	3841378	.	-	.	ID=Os10t0160000-02;Name=Os10t0160000-02;Locus_id=Os10g0160000;CGSNL Gene Symbol=UBP4-4;CGSNL Gene Name=UBIQUITIN-SPECIFIC PROCESSING PROTEASE 4-4;Oryzabase Gene Symbol Synonym(s)=OsUBP4-4%2C OsUBP9%2C UBP9;Oryzabase Gene Name Synonym(s)=ubiquitin-specific processing protease 4-4%2C Ubiquitin-specific protease 9;Note=Similar to Ubiquitin carboxyl-terminal hydrolase.;Transcript_evidence=AK101446 (DDBJ%2C Best hit);ORF_evidence=C5WND1 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Molecular Function: ubiquitin thiolesterase activity (GO:0004221);InterPro=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (IPR001394),Peptidase C19%2C ubiquitin-specific peptidase%2C DUSP domain (IPR006615),Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2%2C conserved site (IPR018200);NIAS_FLcDNA=J033039L17;Oryzabase=22879;TENOR=Os10t0160000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	3841247	3841378	.	-	.	Parent=Os10t0160000-02
Chr10	irgsp1_rep	CDS	3841098	3841246	.	-	0	Parent=Os10t0160000-02
Chr10	irgsp1_rep	CDS	3840288	3840512	.	-	1	Parent=Os10t0160000-02
Chr10	irgsp1_rep	CDS	3839592	3839736	.	-	1	Parent=Os10t0160000-02
Chr10	irgsp1_rep	CDS	3838707	3838766	.	-	0	Parent=Os10t0160000-02
Chr10	irgsp1_rep	CDS	3838514	3838609	.	-	0	Parent=Os10t0160000-02
Chr10	irgsp1_rep	CDS	3837549	3837941	.	-	0	Parent=Os10t0160000-02
Chr10	irgsp1_rep	CDS	3837293	3837469	.	-	0	Parent=Os10t0160000-02
Chr10	irgsp1_rep	three_prime_UTR	3837147	3837292	.	-	.	Parent=Os10t0160000-02
Chr10	irgsp1_rep	mRNA	3849207	3851647	.	-	.	ID=Os10t0160100-01;Name=Os10t0160100-01;Locus_id=Os10g0160100;Note=Glycoside hydrolase%2C family 17 protein.;Transcript_evidence=AK073394 (DDBJ%2C Best hit);ORF_evidence=NP_001149928.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J033044A03;Expression=AK073394;TENOR=Os10t0160100-01;KEGG=Os10t0160100-01
Chr10	irgsp1_rep	five_prime_UTR	3851548	3851647	.	-	.	Parent=Os10t0160100-01
Chr10	irgsp1_rep	CDS	3850360	3851547	.	-	0	Parent=Os10t0160100-01
Chr10	irgsp1_rep	CDS	3849553	3849627	.	-	0	Parent=Os10t0160100-01
Chr10	irgsp1_rep	three_prime_UTR	3849207	3849552	.	-	.	Parent=Os10t0160100-01
Chr10	irgsp1_rep	mRNA	3849250	3851603	.	-	.	ID=Os10t0160100-02;Name=Os10t0160100-02;Locus_id=Os10g0160100;Note=Glycoside hydrolase%2C family 17 protein.;Transcript_evidence=AK120028 (DDBJ%2C Best hit);ORF_evidence=NP_001149928.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=002-186-C12;Expression=AK120028;TENOR=Os10t0160100-02;KEGG=Os10t0160100-02
Chr10	irgsp1_rep	five_prime_UTR	3851548	3851603	.	-	.	Parent=Os10t0160100-02
Chr10	irgsp1_rep	CDS	3850360	3851547	.	-	0	Parent=Os10t0160100-02
Chr10	irgsp1_rep	CDS	3849553	3849627	.	-	0	Parent=Os10t0160100-02
Chr10	irgsp1_rep	three_prime_UTR	3849250	3849552	.	-	.	Parent=Os10t0160100-02
Chr10	irgsp1_rep	mRNA	3868240	3871256	.	+	.	ID=Os10t0160600-02;Name=Os10t0160600-02;Locus_id=Os10g0160600;Note=Conserved hypothetical protein.;Transcript_evidence=AK100367 (DDBJ%2C Best hit),AK071213 (DDBJ%2C Best hit);ORF_evidence=A2Z594 (UniProt);NIAS_FLcDNA=J023083P20,J023087E24;Expression=AK100367;TENOR=Os10t0160600-02;KEGG=Os10t0160600-02
Chr10	irgsp1_rep	five_prime_UTR	3868240	3868505	.	+	.	Parent=Os10t0160600-02
Chr10	irgsp1_rep	CDS	3868506	3869006	.	+	0	Parent=Os10t0160600-02
Chr10	irgsp1_rep	three_prime_UTR	3869007	3871256	.	+	.	Parent=Os10t0160600-02
Chr10	irgsp1_rep	mRNA	3891913	3892400	.	-	.	ID=Os10t0160700-00;Name=Os10t0160700-00;Locus_id=Os10g0160700;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q33AV9 (UniProt);TENOR=Os10t0160700-00;KEGG=Os10t0160700-00
Chr10	irgsp1_rep	CDS	3892375	3892400	.	-	0	Parent=Os10t0160700-00
Chr10	irgsp1_rep	CDS	3891913	3892264	.	-	1	Parent=Os10t0160700-00
Chr10	irgsp1_rep	mRNA	3897383	3900243	.	-	.	ID=Os10t0161100-01;Name=Os10t0161100-01;Locus_id=Os10g0161100;Note=Hypothetical gene.;Transcript_evidence=AK121174 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023082I17;Expression=AK121174;TENOR=Os10t0161100-01;KEGG=Os10t0161100-01
Chr10	irgsp1_rep	five_prime_UTR	3900242	3900243	.	-	.	Parent=Os10t0161100-01
Chr10	irgsp1_rep	CDS	3899678	3900241	.	-	0	Parent=Os10t0161100-01
Chr10	irgsp1_rep	CDS	3898346	3898384	.	-	0	Parent=Os10t0161100-01
Chr10	irgsp1_rep	three_prime_UTR	3898284	3898345	.	-	.	Parent=Os10t0161100-01
Chr10	irgsp1_rep	three_prime_UTR	3897383	3897979	.	-	.	Parent=Os10t0161100-01
Chr10	irgsp1_rep	mRNA	3908198	3912557	.	-	.	ID=Os10t0161400-01;Name=Os10t0161400-01;Locus_id=Os10g0161400;Note=NB-ARC domain containing protein.;Transcript_evidence=AK102113 (DDBJ%2C Best hit);ORF_evidence=Q2QR01 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J033084G11;Expression=AK102113;TENOR=Os10t0161400-01;KEGG=Os10t0161400-01
Chr10	irgsp1_rep	five_prime_UTR	3911197	3912557	.	-	.	Parent=Os10t0161400-01
Chr10	irgsp1_rep	CDS	3908782	3911196	.	-	0	Parent=Os10t0161400-01
Chr10	irgsp1_rep	three_prime_UTR	3908662	3908781	.	-	.	Parent=Os10t0161400-01
Chr10	irgsp1_rep	three_prime_UTR	3908198	3908485	.	-	.	Parent=Os10t0161400-01
Chr10	irgsp1_rep	mRNA	3930492	3932306	.	-	.	ID=Os10t0161550-01;Name=Os10t0161550-01;Locus_id=Os10g0161550;Note=Non-protein coding transcript.;Transcript_evidence=AK242354 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080018J11;TENOR=Os10t0161550-01
Chr10	irgsp1_rep	exon	3931910	3932306	.	-	.	Parent=Os10t0161550-01
Chr10	irgsp1_rep	exon	3931353	3931440	.	-	.	Parent=Os10t0161550-01
Chr10	irgsp1_rep	exon	3930492	3930743	.	-	.	Parent=Os10t0161550-01
Chr10	irgsp1_rep	mRNA	3931336	3932316	.	+	.	ID=Os10t0161625-00;Name=Os10t0161625-00;Locus_id=Os10g0161625;Note=Similar to VAP27.;Transcript_evidence=AK367864 (DDBJ);ORF_evidence=B6SUF8 (UniProt);TENOR=Os10t0161625-00
Chr10	irgsp1_rep	CDS	3931336	3931440	.	+	0	Parent=Os10t0161625-00
Chr10	irgsp1_rep	CDS	3931910	3932017	.	+	0	Parent=Os10t0161625-00
Chr10	irgsp1_rep	three_prime_UTR	3932018	3932316	.	+	.	Parent=Os10t0161625-00
Chr10	irgsp1_rep	mRNA	3932962	3935843	.	+	.	ID=Os10t0161700-01;Name=Os10t0161700-01;Locus_id=Os10g0161700;Oryzabase Gene Symbol Synonym(s)=Os_F0753;Note=Protein of unknown function DUF295 family protein.;Transcript_evidence=AK063451 (DDBJ%2C Best hit);ORF_evidence=Q8SAW9 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174);NIAS_FLcDNA=001-115-G01;Oryzabase=17549;Expression=AK063451;TENOR=Os10t0161700-01;KEGG=Os10t0161700-01
Chr10	irgsp1_rep	five_prime_UTR	3932962	3933010	.	+	.	Parent=Os10t0161700-01
Chr10	irgsp1_rep	CDS	3933011	3934060	.	+	0	Parent=Os10t0161700-01
Chr10	irgsp1_rep	three_prime_UTR	3934061	3934082	.	+	.	Parent=Os10t0161700-01
Chr10	irgsp1_rep	three_prime_UTR	3935292	3935343	.	+	.	Parent=Os10t0161700-01
Chr10	irgsp1_rep	three_prime_UTR	3935449	3935843	.	+	.	Parent=Os10t0161700-01
Chr10	irgsp1_rep	mRNA	3941433	3941895	.	-	.	ID=Os10t0161800-00;Name=Os10t0161800-00;Locus_id=Os10g0161800;Note=Conserved hypothetical protein.;Transcript_evidence=FP094896 (DDBJ);ORF_evidence=Q8SAW8 (UniProt);TENOR=Os10t0161800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	3941473	3941895	.	-	0	Parent=Os10t0161800-00
Chr10	irgsp1_rep	three_prime_UTR	3941433	3941472	.	-	.	Parent=Os10t0161800-00
Chr10	irgsp1_rep	mRNA	3949483	3950042	.	-	.	ID=Os10t0162100-01;Name=Os10t0162100-01;Locus_id=Os10g0162100;Note=Hypothetical conserved gene.;Transcript_evidence=AK062627 (DDBJ%2C Best hit);ORF_evidence=B8BFU3 (UniProt);NIAS_FLcDNA=001-105-C04;Expression=AK062627;TENOR=Os10t0162100-01;KEGG=Os10t0162100-01
Chr10	irgsp1_rep	five_prime_UTR	3949947	3950042	.	-	.	Parent=Os10t0162100-01
Chr10	irgsp1_rep	CDS	3949832	3949946	.	-	0	Parent=Os10t0162100-01
Chr10	irgsp1_rep	CDS	3949638	3949747	.	-	2	Parent=Os10t0162100-01
Chr10	irgsp1_rep	three_prime_UTR	3949483	3949637	.	-	.	Parent=Os10t0162100-01
Chr10	irgsp1_rep	mRNA	3967320	3968592	.	-	.	ID=Os10t0162300-01;Name=Os10t0162300-01;Locus_id=Os10g0162300;Note=Hypothetical conserved gene.;Transcript_evidence=AK107618 (DDBJ%2C Best hit);ORF_evidence=Q8SAW6 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087);NIAS_FLcDNA=002-131-D01;Expression=AK107618;TENOR=Os10t0162300-01;KEGG=Os10t0162300-01
Chr10	irgsp1_rep	five_prime_UTR	3968559	3968592	.	-	.	Parent=Os10t0162300-01
Chr10	irgsp1_rep	CDS	3968106	3968558	.	-	0	Parent=Os10t0162300-01
Chr10	irgsp1_rep	three_prime_UTR	3967320	3968105	.	-	.	Parent=Os10t0162300-01
Chr10	irgsp1_rep	mRNA	3979229	3983411	.	+	.	ID=Os10t0162400-01;Name=Os10t0162400-01;Locus_id=Os10g0162400;Note=Protein of unknown function DUF869%2C plant family protein.;Transcript_evidence=AK064809 (DDBJ%2C Best hit);ORF_evidence=Q33AV6 (UniProt);InterPro=Protein of unknown function DUF869%2C plant (IPR008587);NIAS_FLcDNA=J013000D20;Expression=AK064809;TENOR=Os10t0162400-01;KEGG=Os10t0162400-01
Chr10	irgsp1_rep	five_prime_UTR	3979229	3979230	.	+	.	Parent=Os10t0162400-01
Chr10	irgsp1_rep	CDS	3979231	3981437	.	+	0	Parent=Os10t0162400-01
Chr10	irgsp1_rep	CDS	3981580	3981640	.	+	1	Parent=Os10t0162400-01
Chr10	irgsp1_rep	CDS	3982492	3982938	.	+	0	Parent=Os10t0162400-01
Chr10	irgsp1_rep	three_prime_UTR	3982939	3983411	.	+	.	Parent=Os10t0162400-01
Chr10	irgsp1_rep	mRNA	3984181	3984588	.	-	.	ID=Os10t0162500-00;Name=Os10t0162500-00;Locus_id=Os10g0162500;Note=Chloramphenicol acetyltransferase-like domain domain containing protein.;Transcript_evidence=BT085741 (DDBJ);ORF_evidence=longestORF;InterPro=Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os10t0162500-00
Chr10	irgsp1_rep	five_prime_UTR	3984576	3984588	.	-	.	Parent=Os10t0162500-00
Chr10	irgsp1_rep	CDS	3984181	3984575	.	-	0	Parent=Os10t0162500-00
Chr10	irgsp1_rep	mRNA	3991788	3993428	.	-	.	ID=Os10t0162600-00;Name=Os10t0162600-00;Locus_id=Os10g0162600;CGSNL Gene Symbol=CRL1L2;Oryzabase Gene Symbol Synonym(s)=OsCrll2%2C Crll2;Oryzabase Gene Name Synonym(s)=Crl1-like 2;Note=Lateral organ boundaries%2C LOB domain containing protein.;Transcript_evidence=AB200236 (DDBJ%2C Best hit);ORF_evidence=D6MKQ3 (UniProt);InterPro=Lateral organ boundaries%2C LOB (IPR004883),Uncharacterised conserved protein UCP038127%2C LOB (IPR017394);Oryzabase=10455;TENOR=Os10t0162600-00;KEGG=Os10t0162600-00
Chr10	irgsp1_rep	CDS	3993072	3993428	.	-	0	Parent=Os10t0162600-00
Chr10	irgsp1_rep	CDS	3991788	3992240	.	-	0	Parent=Os10t0162600-00
Chr10	irgsp1_rep	mRNA	4023633	4029902	.	+	.	ID=Os10t0162832-01;Name=Os10t0162832-01;Locus_id=Os10g0162832;Note=Similar to LRR14.;Transcript_evidence=AK069428 (DDBJ%2C Best hit);ORF_evidence=Q9ATQ3 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J023019K11;TENOR=Os10t0162832-01
Chr10	irgsp1_rep	five_prime_UTR	4023633	4023726	.	+	.	Parent=Os10t0162832-01
Chr10	irgsp1_rep	five_prime_UTR	4026884	4026941	.	+	.	Parent=Os10t0162832-01
Chr10	irgsp1_rep	CDS	4026942	4027973	.	+	0	Parent=Os10t0162832-01
Chr10	irgsp1_rep	three_prime_UTR	4027974	4029902	.	+	.	Parent=Os10t0162832-01
Chr10	irgsp1_rep	mRNA	4034799	4038082	.	-	.	ID=Os10t0162834-01;Name=Os10t0162834-01;Locus_id=Os10g0162834;Note=Thioredoxin-like fold domain containing protein.;Transcript_evidence=AK108156 (DDBJ%2C Best hit);ORF_evidence=A3C2T3 (UniProt);InterPro=Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=002-139-G07;TENOR=Os10t0162834-01
Chr10	irgsp1_rep	five_prime_UTR	4037776	4038082	.	-	.	Parent=Os10t0162834-01
Chr10	irgsp1_rep	five_prime_UTR	4037623	4037636	.	-	.	Parent=Os10t0162834-01
Chr10	irgsp1_rep	CDS	4037558	4037622	.	-	0	Parent=Os10t0162834-01
Chr10	irgsp1_rep	CDS	4037155	4037274	.	-	1	Parent=Os10t0162834-01
Chr10	irgsp1_rep	CDS	4036955	4037033	.	-	1	Parent=Os10t0162834-01
Chr10	irgsp1_rep	CDS	4036155	4036241	.	-	0	Parent=Os10t0162834-01
Chr10	irgsp1_rep	CDS	4035232	4035294	.	-	0	Parent=Os10t0162834-01
Chr10	irgsp1_rep	CDS	4034984	4035061	.	-	0	Parent=Os10t0162834-01
Chr10	irgsp1_rep	three_prime_UTR	4034799	4034983	.	-	.	Parent=Os10t0162834-01
Chr10	irgsp1_rep	mRNA	4050820	4051634	.	-	.	ID=Os10t0162836-01;Name=Os10t0162836-01;Locus_id=Os10g0162836;CGSNL Gene Symbol=RLCK378;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 378;Oryzabase Gene Symbol Synonym(s)=OsRLCK378;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 378;Note=Similar to Protein kinase domain containing protein.;Transcript_evidence=AK105147 (DDBJ%2C Best hit);ORF_evidence=Q7XGC7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=001-103-C03;Oryzabase=19046;TENOR=Os10t0162836-01
Chr10	irgsp1_rep	five_prime_UTR	4051633	4051634	.	-	.	Parent=Os10t0162836-01
Chr10	irgsp1_rep	CDS	4051287	4051632	.	-	0	Parent=Os10t0162836-01
Chr10	irgsp1_rep	CDS	4051027	4051040	.	-	2	Parent=Os10t0162836-01
Chr10	irgsp1_rep	three_prime_UTR	4050820	4051026	.	-	.	Parent=Os10t0162836-01
Chr10	irgsp1_rep	mRNA	4051304	4055581	.	+	.	ID=Os10t0162838-00;Name=Os10t0162838-00;Locus_id=Os10g0162838;Note=Hypothetical protein.;Transcript_evidence=tplb0044f04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0162838-00
Chr10	irgsp1_rep	five_prime_UTR	4051304	4052276	.	+	.	Parent=Os10t0162838-00
Chr10	irgsp1_rep	five_prime_UTR	4053817	4053998	.	+	.	Parent=Os10t0162838-00
Chr10	irgsp1_rep	five_prime_UTR	4054778	4055056	.	+	.	Parent=Os10t0162838-00
Chr10	irgsp1_rep	CDS	4055057	4055581	.	+	0	Parent=Os10t0162838-00
Chr10	irgsp1_rep	mRNA	4053856	4055719	.	-	.	ID=Os10t0162840-00;Name=Os10t0162840-00;Locus_id=Os10g0162840;Note=EGF-like calcium-binding domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3C2T6 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: calcium ion binding (GO:0005509);InterPro=EGF-like calcium-binding (IPR001881),Wall-associated kinase (IPR013695),EGF-like calcium-binding%2C conserved site (IPR018097);TENOR=Os10t0162840-00
Chr10	irgsp1_rep	CDS	4054759	4055719	.	-	0	Parent=Os10t0162840-00
Chr10	irgsp1_rep	CDS	4053856	4053977	.	-	2	Parent=Os10t0162840-00
Chr10	irgsp1_rep	mRNA	4075770	4081525	.	+	.	ID=Os10t0162842-00;Name=Os10t0162842-00;Locus_id=Os10g0162842;Note=Hypothetical protein.;Transcript_evidence=tplb0044f04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0162842-00
Chr10	irgsp1_rep	five_prime_UTR	4075770	4076742	.	+	.	Parent=Os10t0162842-00
Chr10	irgsp1_rep	five_prime_UTR	4077717	4077763	.	+	.	Parent=Os10t0162842-00
Chr10	irgsp1_rep	CDS	4077764	4077884	.	+	0	Parent=Os10t0162842-00
Chr10	irgsp1_rep	CDS	4080732	4081249	.	+	2	Parent=Os10t0162842-00
Chr10	irgsp1_rep	three_prime_UTR	4081250	4081525	.	+	.	Parent=Os10t0162842-00
Chr10	irgsp1_rep	mRNA	4080175	4081731	.	-	.	ID=Os10t0162844-00;Name=Os10t0162844-00;Locus_id=Os10g0162844;Note=Wall-associated kinase domain containing protein.;Transcript_evidence=CT827894 (DDBJ%2C Best hit);ORF_evidence=A3C2T6 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021),Molecular Function: protein serine/threonine kinase activity (GO:0004674);InterPro=Wall-associated kinase (IPR013695);TENOR=Os10t0162844-00
Chr10	irgsp1_rep	five_prime_UTR	4081649	4081731	.	-	.	Parent=Os10t0162844-00
Chr10	irgsp1_rep	CDS	4080536	4081648	.	-	0	Parent=Os10t0162844-00
Chr10	irgsp1_rep	three_prime_UTR	4080175	4080535	.	-	.	Parent=Os10t0162844-00
Chr10	irgsp1_rep	mRNA	4094841	4096997	.	+	.	ID=Os10t0162846-00;Name=Os10t0162846-00;Locus_id=Os10g0162846;Note=Similar to LRR14.;Transcript_evidence=AK363200 (DDBJ);ORF_evidence=Q9ATQ3 (UniProt);TENOR=Os10t0162846-00
Chr10	irgsp1_rep	CDS	4094841	4096994	.	+	0	Parent=Os10t0162846-00
Chr10	irgsp1_rep	three_prime_UTR	4096995	4096997	.	+	.	Parent=Os10t0162846-00
Chr10	irgsp1_rep	mRNA	4121439	4121723	.	-	.	ID=Os10t0162848-01;Name=Os10t0162848-01;Locus_id=Os10g0162848;Note=Non-protein coding transcript.;Transcript_evidence=AK058701 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-019-C04;TENOR=Os10t0162848-01
Chr10	irgsp1_rep	exon	4121439	4121723	.	-	.	Parent=Os10t0162848-01
Chr10	irgsp1_rep	mRNA	4164856	4165140	.	-	.	ID=Os10t0162852-01;Name=Os10t0162852-01;Locus_id=Os10g0162852;Note=Non-protein coding transcript.;Transcript_evidence=AK058701 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-019-C04;TENOR=Os10t0162852-01
Chr10	irgsp1_rep	exon	4164856	4165140	.	-	.	Parent=Os10t0162852-01
Chr10	irgsp1_rep	mRNA	4210534	4213870	.	+	.	ID=Os10t0162854-01;Name=Os10t0162854-01;Locus_id=Os10g0162854;Note=Similar to OSIGBa0106P14.3 protein.;Transcript_evidence=AK242330 (DDBJ%2C Best hit);ORF_evidence=Q01I27 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J075198H07;TENOR=Os10t0162854-01
Chr10	irgsp1_rep	five_prime_UTR	4210534	4210617	.	+	.	Parent=Os10t0162854-01
Chr10	irgsp1_rep	CDS	4210618	4212564	.	+	0	Parent=Os10t0162854-01
Chr10	irgsp1_rep	three_prime_UTR	4212565	4213870	.	+	.	Parent=Os10t0162854-01
Chr10	irgsp1_rep	mRNA	4226902	4229142	.	+	.	ID=Os10t0162856-00;Name=Os10t0162856-00;Locus_id=Os10g0162856;CGSNL Gene Symbol=PKS17;CGSNL Gene Name=POLYKETIDE SYNTHASE 17;Oryzabase Gene Symbol Synonym(s)=OsPKS17%2C OsCHS17%2C CHS17;Oryzabase Gene Name Synonym(s)=polyketide synthase 17%2C Chalcone synthase 17;Note=Similar to Chalcone and stilbene synthases%2C N-terminal domain containing protein.;Transcript_evidence=AK358873 (DDBJ);ORF_evidence=Q7G628 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Chalcone/stilbene synthase%2C N-terminal (IPR001099),Polyketide synthase%2C type III (IPR011141),Chalcone/stilbene synthase%2C C-terminal (IPR012328),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);Oryzabase=21565;TENOR=Os10t0162856-00
Chr10	irgsp1_rep	CDS	4226902	4227101	.	+	0	Parent=Os10t0162856-00
Chr10	irgsp1_rep	CDS	4228041	4229142	.	+	1	Parent=Os10t0162856-00
Chr10	irgsp1_rep	mRNA	4251360	4253026	.	+	.	ID=Os10t0162980-01;Name=Os10t0162980-01;Locus_id=Os10g0162980;Note=Similar to Anthocyanidin 5%2C3-O-glucosyltransferase.;Transcript_evidence=AK068878 (DDBJ%2C Best hit);ORF_evidence=B6TEH8 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J023001K02;TENOR=Os10t0162980-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	4251360	4251402	.	+	.	Parent=Os10t0162980-01
Chr10	irgsp1_rep	CDS	4251403	4251826	.	+	0	Parent=Os10t0162980-01
Chr10	irgsp1_rep	CDS	4251898	4252139	.	+	2	Parent=Os10t0162980-01
Chr10	irgsp1_rep	three_prime_UTR	4252140	4253026	.	+	.	Parent=Os10t0162980-01
Chr10	irgsp1_rep	mRNA	4262515	4266433	.	+	.	ID=Os10t0163040-01;Name=Os10t0163040-01;Locus_id=Os10g0163040;Note=Similar to Blast resistance protein.;Transcript_evidence=AK111827 (DDBJ%2C Best hit);ORF_evidence=Q10A41 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J023059I04;TENOR=Os10t0163040-01;KEGG=Os10t0163040-01
Chr10	irgsp1_rep	five_prime_UTR	4262515	4262715	.	+	.	Parent=Os10t0163040-01
Chr10	irgsp1_rep	five_prime_UTR	4262797	4263440	.	+	.	Parent=Os10t0163040-01
Chr10	irgsp1_rep	CDS	4263441	4266212	.	+	0	Parent=Os10t0163040-01
Chr10	irgsp1_rep	three_prime_UTR	4266213	4266433	.	+	.	Parent=Os10t0163040-01
Chr10	irgsp1_rep	mRNA	4263295	4266433	.	+	.	ID=Os10t0163040-02;Name=Os10t0163040-02;Locus_id=Os10g0163040;Note=Similar to Blast resistance protein.;Transcript_evidence=AK111562 (DDBJ%2C Best hit);ORF_evidence=Q10A41 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013067B09;TENOR=Os10t0163040-02;KEGG=Os10t0163040-02
Chr10	irgsp1_rep	five_prime_UTR	4263295	4263440	.	+	.	Parent=Os10t0163040-02
Chr10	irgsp1_rep	CDS	4263441	4266212	.	+	0	Parent=Os10t0163040-02
Chr10	irgsp1_rep	three_prime_UTR	4266213	4266433	.	+	.	Parent=Os10t0163040-02
Chr10	irgsp1_rep	mRNA	4281031	4286574	.	-	.	ID=Os10t0163100-01;Name=Os10t0163100-01;Locus_id=Os10g0163100;CGSNL Gene Symbol=ATG9B;CGSNL Gene Name=AUTOPHAGY ASSOCIATED GENE 9B;Oryzabase Gene Symbol Synonym(s)=OsATG9b;Oryzabase Gene Name Synonym(s)=autophagy 9b;Note=Similar to Autophagy protein Apg9 containing protein%2C expressed.;Transcript_evidence=AK106441 (DDBJ%2C Best hit);ORF_evidence=Q10A37 (UniProt);InterPro=Autophagy-related protein 9 (IPR007241);NIAS_FLcDNA=002-103-D10;Oryzabase=9653;TENOR=Os10t0163100-01;KEGG=Os10t0163100-01
Chr10	irgsp1_rep	five_prime_UTR	4286386	4286574	.	-	.	Parent=Os10t0163100-01
Chr10	irgsp1_rep	five_prime_UTR	4285870	4285928	.	-	.	Parent=Os10t0163100-01
Chr10	irgsp1_rep	CDS	4285295	4285869	.	-	0	Parent=Os10t0163100-01
Chr10	irgsp1_rep	CDS	4284879	4285199	.	-	1	Parent=Os10t0163100-01
Chr10	irgsp1_rep	CDS	4284201	4284423	.	-	1	Parent=Os10t0163100-01
Chr10	irgsp1_rep	CDS	4283849	4284028	.	-	0	Parent=Os10t0163100-01
Chr10	irgsp1_rep	CDS	4283552	4283758	.	-	0	Parent=Os10t0163100-01
Chr10	irgsp1_rep	CDS	4282912	4282989	.	-	0	Parent=Os10t0163100-01
Chr10	irgsp1_rep	CDS	4282758	4282828	.	-	0	Parent=Os10t0163100-01
Chr10	irgsp1_rep	CDS	4282558	4282668	.	-	1	Parent=Os10t0163100-01
Chr10	irgsp1_rep	CDS	4281119	4282136	.	-	1	Parent=Os10t0163100-01
Chr10	irgsp1_rep	three_prime_UTR	4281031	4281118	.	-	.	Parent=Os10t0163100-01
Chr10	irgsp1_rep	mRNA	4290772	4294905	.	-	.	ID=Os10t0163130-01;Name=Os10t0163130-01;Locus_id=Os10g0163130;Note=Similar to Integral membrane protein DUF6 containing protein%2C expressed.;Transcript_evidence=AK107311 (DDBJ%2C Best hit);ORF_evidence=Q10A36 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=002-126-D08;TENOR=Os10t0163130-01;KEGG=Os10t0163130-01
Chr10	irgsp1_rep	five_prime_UTR	4294802	4294905	.	-	.	Parent=Os10t0163130-01
Chr10	irgsp1_rep	CDS	4294578	4294801	.	-	0	Parent=Os10t0163130-01
Chr10	irgsp1_rep	CDS	4293260	4293322	.	-	1	Parent=Os10t0163130-01
Chr10	irgsp1_rep	CDS	4292135	4292251	.	-	1	Parent=Os10t0163130-01
Chr10	irgsp1_rep	CDS	4291799	4292045	.	-	1	Parent=Os10t0163130-01
Chr10	irgsp1_rep	CDS	4291480	4291638	.	-	0	Parent=Os10t0163130-01
Chr10	irgsp1_rep	CDS	4291211	4291362	.	-	0	Parent=Os10t0163130-01
Chr10	irgsp1_rep	CDS	4290932	4291076	.	-	1	Parent=Os10t0163130-01
Chr10	irgsp1_rep	three_prime_UTR	4290772	4290931	.	-	.	Parent=Os10t0163130-01
Chr10	irgsp1_rep	mRNA	4316084	4316670	.	-	.	ID=Os10t0163190-01;Name=Os10t0163190-01;Locus_id=Os10g0163190;Note=Hypothetical gene.;Transcript_evidence=AK119996 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=002-184-H01;TENOR=Os10t0163190-01;KEGG=Os10t0163190-01
Chr10	irgsp1_rep	CDS	4316437	4316670	.	-	0	Parent=Os10t0163190-01
Chr10	irgsp1_rep	three_prime_UTR	4316084	4316436	.	-	.	Parent=Os10t0163190-01
Chr10	irgsp1_rep	mRNA	4317272	4318066	.	+	.	ID=Os10t0163220-00;Name=Os10t0163220-00;Locus_id=Os10g0163220;Note=Hypothetical conserved gene.;Transcript_evidence=CT837579 (DDBJ%2C Best hit);ORF_evidence=Q10A33 (UniProt);TENOR=Os10t0163220-00;KEGG=Os10t0163220-00
Chr10	irgsp1_rep	five_prime_UTR	4317272	4317314	.	+	.	Parent=Os10t0163220-00
Chr10	irgsp1_rep	CDS	4317315	4317848	.	+	0	Parent=Os10t0163220-00
Chr10	irgsp1_rep	three_prime_UTR	4317849	4318066	.	+	.	Parent=Os10t0163220-00
Chr10	irgsp1_rep	mRNA	4322936	4323972	.	-	.	ID=Os10t0163250-00;Name=Os10t0163250-00;Locus_id=Os10g0163250;Note=Hypothetical conserved gene.;Transcript_evidence=CU406268 (DDBJ%2C Best hit);ORF_evidence=NP_001050934.1 (RefSeq);TENOR=Os10t0163250-00;KEGG=Os10t0163250-00
Chr10	irgsp1_rep	CDS	4323502	4323972	.	-	0	Parent=Os10t0163250-00
Chr10	irgsp1_rep	three_prime_UTR	4322936	4323501	.	-	.	Parent=Os10t0163250-00
Chr10	irgsp1_rep	mRNA	4326615	4329302	.	+	.	ID=Os10t0163290-00;Name=Os10t0163290-00;Locus_id=Os10g0163290;CGSNL Gene Symbol=ABCG24;CGSNL Gene Name=ABC TRANSPORTER G FAMILY MEMBER 24;Oryzabase Gene Symbol Synonym(s)=OsABCG24;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 24;Note=Similar to ABC-2 type transporter family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10A32 (UniProt);GO=Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887);InterPro=ABC transporter-like (IPR003439);Oryzabase=12001;TENOR=Os10t0163290-00
Chr10	irgsp1_rep	CDS	4326615	4327118	.	+	0	Parent=Os10t0163290-00
Chr10	irgsp1_rep	CDS	4327596	4327682	.	+	0	Parent=Os10t0163290-00
Chr10	irgsp1_rep	CDS	4329019	4329105	.	+	0	Parent=Os10t0163290-00
Chr10	irgsp1_rep	CDS	4329216	4329302	.	+	0	Parent=Os10t0163290-00
Chr10	irgsp1_rep	mRNA	4326654	4332934	.	-	.	ID=Os10t0163300-00;Name=Os10t0163300-00;Locus_id=Os10g0163300;Note=Hypothetical protein.;Transcript_evidence=tplb0025k13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0163300-00
Chr10	irgsp1_rep	five_prime_UTR	4332229	4332934	.	-	.	Parent=Os10t0163300-00
Chr10	irgsp1_rep	five_prime_UTR	4328711	4328892	.	-	.	Parent=Os10t0163300-00
Chr10	irgsp1_rep	CDS	4328661	4328710	.	-	0	Parent=Os10t0163300-00
Chr10	irgsp1_rep	CDS	4327573	4327737	.	-	1	Parent=Os10t0163300-00
Chr10	irgsp1_rep	CDS	4326678	4327101	.	-	1	Parent=Os10t0163300-00
Chr10	irgsp1_rep	three_prime_UTR	4326654	4326677	.	-	.	Parent=Os10t0163300-00
Chr10	irgsp1_rep	mRNA	4338836	4340390	.	-	.	ID=Os10t0163310-01;Name=Os10t0163310-01;Locus_id=Os10g0163310;Note=Hypothetical conserved gene.;Transcript_evidence=AK062291 (DDBJ%2C Best hit);ORF_evidence=Q10A29 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: O-acyltransferase activity (GO:0008374);InterPro=Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase (IPR003386);NIAS_FLcDNA=001-100-E09;TENOR=Os10t0163310-01;KEGG=Os10t0163310-01
Chr10	irgsp1_rep	five_prime_UTR	4340389	4340390	.	-	.	Parent=Os10t0163310-01
Chr10	irgsp1_rep	CDS	4339936	4340388	.	-	0	Parent=Os10t0163310-01
Chr10	irgsp1_rep	three_prime_UTR	4338836	4339935	.	-	.	Parent=Os10t0163310-01
Chr10	irgsp1_rep	mRNA	4343603	4345509	.	-	.	ID=Os10t0163340-01;Name=Os10t0163340-01;Locus_id=Os10g0163340;Note=Similar to Cytosolic aldolase.;Transcript_evidence=AK099184 (DDBJ%2C Best hit),AK071547 (DDBJ%2C Best hit);ORF_evidence=Q40676 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: fructose-bisphosphate aldolase activity (GO:0004332);InterPro=Fructose-bisphosphate aldolase%2C class-I (IPR000741),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J023106E24,J023099B20;TENOR=Os10t0163340-01;KEGG=Os10t0163340-01 (EC:4.1.2.13)
Chr10	irgsp1_rep	five_prime_UTR	4345450	4345509	.	-	.	Parent=Os10t0163340-01
Chr10	irgsp1_rep	CDS	4345422	4345449	.	-	0	Parent=Os10t0163340-01
Chr10	irgsp1_rep	CDS	4343935	4344983	.	-	2	Parent=Os10t0163340-01
Chr10	irgsp1_rep	three_prime_UTR	4343603	4343934	.	-	.	Parent=Os10t0163340-01
Chr10	irgsp1_rep	mRNA	4346870	4348360	.	-	.	ID=Os10t0163370-01;Name=Os10t0163370-01;Locus_id=Os10g0163370;Note=Lecithin:cholesterol acyltransferase family protein.;Transcript_evidence=AK059918 (DDBJ%2C Best hit);ORF_evidence=A2XUA5 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: O-acyltransferase activity (GO:0008374);InterPro=Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase (IPR003386);NIAS_FLcDNA=006-209-F05;TENOR=Os10t0163370-01;KEGG=Os10t0163370-01 (EC:3.1.1.5)
Chr10	irgsp1_rep	five_prime_UTR	4348345	4348360	.	-	.	Parent=Os10t0163370-01
Chr10	irgsp1_rep	CDS	4347956	4348344	.	-	0	Parent=Os10t0163370-01
Chr10	irgsp1_rep	CDS	4346974	4347883	.	-	1	Parent=Os10t0163370-01
Chr10	irgsp1_rep	three_prime_UTR	4346870	4346973	.	-	.	Parent=Os10t0163370-01
Chr10	irgsp1_rep	mRNA	4407574	4408531	.	-	.	ID=Os10t0164001-00;Name=Os10t0164001-00;Locus_id=Os10g0164001;Note=Non-protein coding transcript.;Transcript_evidence=CT837632 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os10t0164001-00
Chr10	irgsp1_rep	exon	4407574	4408531	.	-	.	Parent=Os10t0164001-00
Chr10	irgsp1_rep	mRNA	4445399	4466927	.	+	.	ID=Os10t0164500-00;Name=Os10t0164500-00;Locus_id=Os10g0164500;Note=Similar to CytoChrome P450 family protein%2C expressed.;Transcript_evidence=AK368795 (DDBJ);ORF_evidence=Q10A28 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);TENOR=Os10t0164500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	4445399	4446292	.	+	0	Parent=Os10t0164500-00
Chr10	irgsp1_rep	CDS	4455757	4455835	.	+	0	Parent=Os10t0164500-00
Chr10	irgsp1_rep	CDS	4466299	4466849	.	+	2	Parent=Os10t0164500-00
Chr10	irgsp1_rep	three_prime_UTR	4466850	4466927	.	+	.	Parent=Os10t0164500-00
Chr10	irgsp1_rep	mRNA	4478088	4479888	.	+	.	ID=Os10t0165000-01;Name=Os10t0165000-01;Locus_id=Os10g0165000;Note=Protein of unknown function DUF266%2C plant family protein.;Transcript_evidence=AK122169 (DDBJ%2C Best hit);ORF_evidence=Q94HM3 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: acetylglucosaminyltransferase activity (GO:0008375);InterPro=Glycosyl transferase%2C family 14 (IPR003406);NIAS_FLcDNA=J033148C16;Expression=AK122169;TENOR=Os10t0165000-01;KEGG=Os10t0165000-01
Chr10	irgsp1_rep	five_prime_UTR	4478088	4478213	.	+	.	Parent=Os10t0165000-01
Chr10	irgsp1_rep	CDS	4478214	4479428	.	+	0	Parent=Os10t0165000-01
Chr10	irgsp1_rep	three_prime_UTR	4479429	4479888	.	+	.	Parent=Os10t0165000-01
Chr10	irgsp1_rep	mRNA	4497746	4503667	.	+	.	ID=Os10t0165300-01;Name=Os10t0165300-01;Locus_id=Os10g0165300;Note=CytoChrome P450 family protein.;Transcript_evidence=AK240718 (DDBJ%2C Best hit);ORF_evidence=Q33AR5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J043024C10;TENOR=Os10t0165300-01;KEGG=Os10t0165300-01
Chr10	irgsp1_rep	five_prime_UTR	4497746	4497773	.	+	.	Parent=Os10t0165300-01
Chr10	irgsp1_rep	CDS	4497774	4498676	.	+	0	Parent=Os10t0165300-01
Chr10	irgsp1_rep	CDS	4502663	4503265	.	+	0	Parent=Os10t0165300-01
Chr10	irgsp1_rep	three_prime_UTR	4503266	4503667	.	+	.	Parent=Os10t0165300-01
Chr10	irgsp1_rep	mRNA	4509071	4509912	.	-	.	ID=Os10t0165400-01;Name=Os10t0165400-01;Locus_id=Os10g0165400;Note=Hypothetical gene.;Transcript_evidence=AK287659 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065098N13;TENOR=Os10t0165400-01;KEGG=Os10t0165400-01
Chr10	irgsp1_rep	five_prime_UTR	4509912	4509912	.	-	.	Parent=Os10t0165400-01
Chr10	irgsp1_rep	CDS	4509426	4509911	.	-	0	Parent=Os10t0165400-01
Chr10	irgsp1_rep	three_prime_UTR	4509071	4509425	.	-	.	Parent=Os10t0165400-01
Chr10	irgsp1_rep	mRNA	4581753	4582577	.	-	.	ID=Os10t0166300-01;Name=Os10t0166300-01;Locus_id=Os10g0166300;Note=Hypothetical gene.;Transcript_evidence=AK102437 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033093K01;Expression=AK102437;TENOR=Os10t0166300-01;KEGG=Os10t0166300-01
Chr10	irgsp1_rep	five_prime_UTR	4582076	4582577	.	-	.	Parent=Os10t0166300-01
Chr10	irgsp1_rep	CDS	4581839	4582075	.	-	0	Parent=Os10t0166300-01
Chr10	irgsp1_rep	three_prime_UTR	4581753	4581838	.	-	.	Parent=Os10t0166300-01
Chr10	irgsp1_rep	mRNA	4599943	4602849	.	+	.	ID=Os10t0166600-01;Name=Os10t0166600-01;Locus_id=Os10g0166600;Note=CytoChrome P450 family protein.;Transcript_evidence=AK108519 (DDBJ%2C Best hit);ORF_evidence=Q10A28 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=002-144-B01;Expression=AK108519;TENOR=Os10t0166600-01;KEGG=Os10t0166600-01
Chr10	irgsp1_rep	five_prime_UTR	4599943	4599995	.	+	.	Parent=Os10t0166600-01
Chr10	irgsp1_rep	CDS	4599996	4600874	.	+	0	Parent=Os10t0166600-01
Chr10	irgsp1_rep	CDS	4602142	4602747	.	+	0	Parent=Os10t0166600-01
Chr10	irgsp1_rep	three_prime_UTR	4602748	4602849	.	+	.	Parent=Os10t0166600-01
Chr10	irgsp1_rep	mRNA	4629337	4630248	.	+	.	ID=Os10t0167200-00;Name=Os10t0167200-00;Locus_id=Os10g0167200;Note=Similar to CytoChrome P450 family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q33AR5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);TENOR=Os10t0167200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	4629337	4630248	.	+	0	Parent=Os10t0167200-00
Chr10	irgsp1_rep	mRNA	4635054	4636133	.	+	.	ID=Os10t0167250-00;Name=Os10t0167250-00;Locus_id=Os10g0167250;Note=Similar to CytoChrome P450 CYP76H18.;Transcript_evidence=CT836566 (DDBJ%2C Best hit);ORF_evidence=Q33AR5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os10t0167250-00;KEGG=Os10t0167250-00
Chr10	irgsp1_rep	five_prime_UTR	4635054	4635054	.	+	.	Parent=Os10t0167250-00
Chr10	irgsp1_rep	CDS	4635055	4635660	.	+	0	Parent=Os10t0167250-00
Chr10	irgsp1_rep	three_prime_UTR	4635661	4636133	.	+	.	Parent=Os10t0167250-00
Chr10	irgsp1_rep	mRNA	4639798	4644295	.	-	.	ID=Os10t0167300-01;Name=Os10t0167300-01;Locus_id=Os10g0167300;Oryzabase Gene Symbol Synonym(s)=OsEE1%2C OsENO1%2C ENO1%2C OsEno7%2C Eno7%2C OsEno4%2C Eno4;Oryzabase Gene Name Synonym(s)=Early Embryogenesis-Specific Enolase 1%2C Enolase 1%2C enolase 7%2C enolase 4;Note=Similar to Enolase 2 (EC 4.2.1.11) (2-phosphoglycerate dehydratase 2) (2-phospho- D-glycerate hydro-lyase 2).;Transcript_evidence=AK073662 (DDBJ%2C Best hit);ORF_evidence=A1YQJ3 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Cellular Component: phosphopyruvate hydratase complex (GO:0000015),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: phosphopyruvate hydratase activity (GO:0004634);InterPro=Enolase (IPR000941),Enolase%2C conserved site (IPR020809),Enolase%2C C-terminal (IPR020810),Enolase%2C N-terminal (IPR020811);NIAS_FLcDNA=J033048K07;Oryzabase=13764;TENOR=Os10t0167300-01
Chr10	irgsp1_rep	five_prime_UTR	4644203	4644295	.	-	.	Parent=Os10t0167300-01
Chr10	irgsp1_rep	CDS	4644134	4644202	.	-	0	Parent=Os10t0167300-01
Chr10	irgsp1_rep	CDS	4643415	4643478	.	-	0	Parent=Os10t0167300-01
Chr10	irgsp1_rep	CDS	4643229	4643293	.	-	2	Parent=Os10t0167300-01
Chr10	irgsp1_rep	CDS	4642628	4642675	.	-	0	Parent=Os10t0167300-01
Chr10	irgsp1_rep	CDS	4642462	4642548	.	-	0	Parent=Os10t0167300-01
Chr10	irgsp1_rep	CDS	4642283	4642363	.	-	0	Parent=Os10t0167300-01
Chr10	irgsp1_rep	CDS	4642090	4642194	.	-	0	Parent=Os10t0167300-01
Chr10	irgsp1_rep	CDS	4641936	4642013	.	-	0	Parent=Os10t0167300-01
Chr10	irgsp1_rep	CDS	4641786	4641860	.	-	0	Parent=Os10t0167300-01
Chr10	irgsp1_rep	CDS	4641496	4641558	.	-	0	Parent=Os10t0167300-01
Chr10	irgsp1_rep	CDS	4641316	4641396	.	-	0	Parent=Os10t0167300-01
Chr10	irgsp1_rep	CDS	4641005	4641199	.	-	0	Parent=Os10t0167300-01
Chr10	irgsp1_rep	CDS	4640871	4640921	.	-	0	Parent=Os10t0167300-01
Chr10	irgsp1_rep	CDS	4640702	4640790	.	-	0	Parent=Os10t0167300-01
Chr10	irgsp1_rep	CDS	4640560	4640611	.	-	1	Parent=Os10t0167300-01
Chr10	irgsp1_rep	CDS	4640392	4640448	.	-	0	Parent=Os10t0167300-01
Chr10	irgsp1_rep	CDS	4640014	4640094	.	-	0	Parent=Os10t0167300-01
Chr10	irgsp1_rep	three_prime_UTR	4639798	4640013	.	-	.	Parent=Os10t0167300-01
Chr10	irgsp1_rep	mRNA	4639798	4644244	.	-	.	ID=Os10t0167300-02;Name=Os10t0167300-02;Locus_id=Os10g0167300;Oryzabase Gene Symbol Synonym(s)=OsEE1%2C OsENO1%2C ENO1%2C OsEno7%2C Eno7%2C OsEno4%2C Eno4;Oryzabase Gene Name Synonym(s)=Early Embryogenesis-Specific Enolase 1%2C Enolase 1%2C enolase 7%2C enolase 4;Note=Similar to Enolase 2 (EC 4.2.1.11) (2-phosphoglycerate dehydratase 2) (2-phospho- D-glycerate hydro-lyase 2).;Transcript_evidence=AK099292 (DDBJ%2C Best hit);ORF_evidence=A1YQJ3 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Cellular Component: phosphopyruvate hydratase complex (GO:0000015),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: phosphopyruvate hydratase activity (GO:0004634);InterPro=Enolase (IPR000941),Enolase%2C conserved site (IPR020809),Enolase%2C C-terminal (IPR020810),Enolase%2C N-terminal (IPR020811);NIAS_FLcDNA=J023133I04;Oryzabase=13764;TENOR=Os10t0167300-02
Chr10	irgsp1_rep	five_prime_UTR	4644203	4644244	.	-	.	Parent=Os10t0167300-02
Chr10	irgsp1_rep	CDS	4644134	4644202	.	-	0	Parent=Os10t0167300-02
Chr10	irgsp1_rep	CDS	4643415	4643478	.	-	0	Parent=Os10t0167300-02
Chr10	irgsp1_rep	CDS	4643229	4643293	.	-	2	Parent=Os10t0167300-02
Chr10	irgsp1_rep	CDS	4642628	4642675	.	-	0	Parent=Os10t0167300-02
Chr10	irgsp1_rep	CDS	4642462	4642548	.	-	0	Parent=Os10t0167300-02
Chr10	irgsp1_rep	CDS	4642283	4642363	.	-	0	Parent=Os10t0167300-02
Chr10	irgsp1_rep	CDS	4642090	4642194	.	-	0	Parent=Os10t0167300-02
Chr10	irgsp1_rep	CDS	4641936	4642013	.	-	0	Parent=Os10t0167300-02
Chr10	irgsp1_rep	CDS	4641786	4641860	.	-	0	Parent=Os10t0167300-02
Chr10	irgsp1_rep	CDS	4641496	4641558	.	-	0	Parent=Os10t0167300-02
Chr10	irgsp1_rep	CDS	4641316	4641396	.	-	0	Parent=Os10t0167300-02
Chr10	irgsp1_rep	CDS	4641005	4641199	.	-	0	Parent=Os10t0167300-02
Chr10	irgsp1_rep	CDS	4640871	4640921	.	-	0	Parent=Os10t0167300-02
Chr10	irgsp1_rep	CDS	4640702	4640790	.	-	0	Parent=Os10t0167300-02
Chr10	irgsp1_rep	CDS	4640560	4640611	.	-	1	Parent=Os10t0167300-02
Chr10	irgsp1_rep	CDS	4640392	4640448	.	-	0	Parent=Os10t0167300-02
Chr10	irgsp1_rep	CDS	4640014	4640094	.	-	0	Parent=Os10t0167300-02
Chr10	irgsp1_rep	three_prime_UTR	4639798	4640013	.	-	.	Parent=Os10t0167300-02
Chr10	irgsp1_rep	mRNA	4641785	4642197	.	+	.	ID=Os10t0167401-00;Name=Os10t0167401-00;Locus_id=Os10g0167401;Note=Non-protein coding transcript.;Transcript_evidence=BT084318 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0167401-00
Chr10	irgsp1_rep	exon	4641785	4641862	.	+	.	Parent=Os10t0167401-00
Chr10	irgsp1_rep	exon	4641942	4642015	.	+	.	Parent=Os10t0167401-00
Chr10	irgsp1_rep	exon	4642092	4642197	.	+	.	Parent=Os10t0167401-00
Chr10	irgsp1_rep	mRNA	4655656	4659276	.	+	.	ID=Os10t0167500-00;Name=Os10t0167500-00;Locus_id=Os10g0167500;Note=Hypothetical conserved gene.;Transcript_evidence=tplb0008p18 (Wheat FLcDNA);ORF_evidence=NP_001064224.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);TENOR=Os10t0167500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	4655656	4656214	.	+	0	Parent=Os10t0167500-00
Chr10	irgsp1_rep	CDS	4657735	4658120	.	+	2	Parent=Os10t0167500-00
Chr10	irgsp1_rep	CDS	4658223	4658402	.	+	0	Parent=Os10t0167500-00
Chr10	irgsp1_rep	three_prime_UTR	4658403	4658500	.	+	.	Parent=Os10t0167500-00
Chr10	irgsp1_rep	three_prime_UTR	4658598	4658845	.	+	.	Parent=Os10t0167500-00
Chr10	irgsp1_rep	three_prime_UTR	4658955	4659276	.	+	.	Parent=Os10t0167500-00
Chr10	irgsp1_rep	mRNA	4663188	4667087	.	-	.	ID=Os10t0167600-01;Name=Os10t0167600-01;Locus_id=Os10g0167600;Oryzabase Gene Symbol Synonym(s)=qUVR-10%2C OsPHR%2C OsCPD%2C CPD;Oryzabase Gene Name Synonym(s)=CPD photolyase%2C cyclobutane pyrimidine dimer photolyase%2C deoxyribodipyrimidine photolyase;Note=Splicing variant;Transcript_evidence=AK111418 (DDBJ%2C Best hit);ORF_evidence=Inferred from literature;GO=Biological Process: DNA repair (GO:0006281),Molecular Function: deoxyribodipyrimidine photo-lyase activity (GO:0003904),Molecular Function: DNA photolyase activity (GO:0003913);InterPro=DNA photolyase%2C FAD-binding/CryptoChrome%2C C-terminal (IPR005101),DNA photolyase%2C N-terminal (IPR006050),DNA photolyase%2C class 2 (IPR008148),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=002-182-G05;Oryzabase=14080;TENOR=Os10t0167600-01;KEGG=Os10t0167600-01 (EC:4.1.99.3)
Chr10	irgsp1_rep	five_prime_UTR	4666992	4667087	.	-	.	Parent=Os10t0167600-01
Chr10	irgsp1_rep	CDS	4666646	4666991	.	-	0	Parent=Os10t0167600-01
Chr10	irgsp1_rep	CDS	4666375	4666523	.	-	2	Parent=Os10t0167600-01
Chr10	irgsp1_rep	CDS	4666059	4666255	.	-	0	Parent=Os10t0167600-01
Chr10	irgsp1_rep	CDS	4665732	4665972	.	-	1	Parent=Os10t0167600-01
Chr10	irgsp1_rep	CDS	4665407	4665568	.	-	0	Parent=Os10t0167600-01
Chr10	irgsp1_rep	three_prime_UTR	4665250	4665286	.	-	.	Parent=Os10t0167600-01
Chr10	irgsp1_rep	three_prime_UTR	4665103	4665161	.	-	.	Parent=Os10t0167600-01
Chr10	irgsp1_rep	three_prime_UTR	4664399	4664480	.	-	.	Parent=Os10t0167600-01
Chr10	irgsp1_rep	three_prime_UTR	4663693	4663764	.	-	.	Parent=Os10t0167600-01
Chr10	irgsp1_rep	three_prime_UTR	4663188	4663575	.	-	.	Parent=Os10t0167600-01
Chr10	irgsp1_rep	mRNA	4663188	4667087	.	-	.	ID=Os10t0167600-02;Name=Os10t0167600-02;Locus_id=Os10g0167600;RAP-DB Gene Symbol Synonym(s)=qUVR-10 OsPHR OsCPD CPD;RAP-DB Gene Name Synonym(s)=CPD photolyase%2C cyclobutane pyrimidine dimer photolyase;Oryzabase Gene Symbol Synonym(s)=qUVR-10%2C OsPHR%2C OsCPD%2C CPD;Oryzabase Gene Name Synonym(s)=CPD photolyase%2C cyclobutane pyrimidine dimer photolyase%2C deoxyribodipyrimidine photolyase;Note=Cyclobutane pyrimidine dimer (CPD) photolyase%2C Ultraviolet-B (UVB) resistance;Transcript_evidence=AB096003 (Sasanishiki),AB198744 (Nipponbare),AK111418;ORF_evidence=Q6F6A2;GO=Biological Process: DNA repair (GO:0006281),Molecular Function: deoxyribodipyrimidine photo-lyase activity (GO:0003904),Molecular Function: DNA photolyase activity (GO:0003913);InterPro=DNA photolyase%2C class 2 (IPR008148),DNA photolyase%2C N-terminal (IPR006050),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),DNA photolyase%2C FAD-binding/CryptoChrome%2C C-terminal (IPR005101);Manual Curation=January 19%2C 2015;Literature_PMID=15965242,12764611;Oryzabase=14080
Chr10	irgsp1_rep	five_prime_UTR	4666992	4667087	.	-	.	Parent=Os10t0167600-02
Chr10	irgsp1_rep	CDS	4666646	4666991	.	-	0	Parent=Os10t0167600-02
Chr10	irgsp1_rep	CDS	4666375	4666523	.	-	2	Parent=Os10t0167600-02
Chr10	irgsp1_rep	CDS	4666059	4666255	.	-	0	Parent=Os10t0167600-02
Chr10	irgsp1_rep	CDS	4665732	4665972	.	-	1	Parent=Os10t0167600-02
Chr10	irgsp1_rep	CDS	4665411	4665568	.	-	0	Parent=Os10t0167600-02
Chr10	irgsp1_rep	CDS	4665250	4665286	.	-	1	Parent=Os10t0167600-02
Chr10	irgsp1_rep	CDS	4665103	4665161	.	-	0	Parent=Os10t0167600-02
Chr10	irgsp1_rep	CDS	4664399	4664480	.	-	1	Parent=Os10t0167600-02
Chr10	irgsp1_rep	CDS	4663693	4663764	.	-	0	Parent=Os10t0167600-02
Chr10	irgsp1_rep	CDS	4663396	4663575	.	-	0	Parent=Os10t0167600-02
Chr10	irgsp1_rep	three_prime_UTR	4663188	4663395	.	-	.	Parent=Os10t0167600-02
Chr10	irgsp1_rep	mRNA	4671330	4673970	.	+	.	ID=Os10t0167700-01;Name=Os10t0167700-01;Locus_id=Os10g0167700;Note=Conserved hypothetical protein.;Transcript_evidence=AK121180 (DDBJ%2C Best hit);ORF_evidence=B9F5D3 (UniProt);NIAS_FLcDNA=J023083M11;TENOR=Os10t0167700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	4671330	4671569	.	+	.	Parent=Os10t0167700-01
Chr10	irgsp1_rep	CDS	4671570	4671794	.	+	0	Parent=Os10t0167700-01
Chr10	irgsp1_rep	three_prime_UTR	4671795	4671922	.	+	.	Parent=Os10t0167700-01
Chr10	irgsp1_rep	three_prime_UTR	4672566	4673970	.	+	.	Parent=Os10t0167700-01
Chr10	irgsp1_rep	mRNA	4671359	4673976	.	+	.	ID=Os10t0167700-02;Name=Os10t0167700-02;Locus_id=Os10g0167700;Note=Conserved hypothetical protein.;Transcript_evidence=AK072061 (DDBJ%2C Best hit);ORF_evidence=B9F5D3 (UniProt);NIAS_FLcDNA=J013111F19;TENOR=Os10t0167700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	4671359	4671569	.	+	.	Parent=Os10t0167700-02
Chr10	irgsp1_rep	CDS	4671570	4671794	.	+	0	Parent=Os10t0167700-02
Chr10	irgsp1_rep	three_prime_UTR	4671795	4671922	.	+	.	Parent=Os10t0167700-02
Chr10	irgsp1_rep	three_prime_UTR	4672566	4673976	.	+	.	Parent=Os10t0167700-02
Chr10	irgsp1_rep	mRNA	4680861	4682894	.	+	.	ID=Os10t0167900-01;Name=Os10t0167900-01;Locus_id=Os10g0167900;RAP-DB Gene Symbol Synonym(s)=ARAS2;RAP-DB Gene Name Synonym(s)=alkylresorcylic acid synthase 2;CGSNL Gene Symbol=PKS18;CGSNL Gene Name=POLYKETIDE SYNTHASE 18;Oryzabase Gene Symbol Synonym(s)=OsPKS18%2C OsCHS18%2C CHS18;Oryzabase Gene Name Synonym(s)=polyketide synthase 18%2C Chalcone synthase 18;Note=Type III polyketide synthase;Transcript_evidence=BT009068 (bread wheat);ORF_evidence=Q8LM05;GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Thiolase-like (IPR016039),Polyketide synthase%2C type III (IPR011141),Chalcone/stilbene synthase%2C N-terminal (IPR001099),Chalcone/stilbene synthase%2C C-terminal (IPR012328);Manual Curation=October 1%2C 2020;Literature_PMID=20451227;Oryzabase=21566;TENOR=Os10t0167900-00
Chr10	irgsp1_rep	five_prime_UTR	4680861	4680917	.	+	.	Parent=Os10t0167900-01
Chr10	irgsp1_rep	CDS	4680918	4681116	.	+	0	Parent=Os10t0167900-01
Chr10	irgsp1_rep	CDS	4681894	4682894	.	+	2	Parent=Os10t0167900-01
Chr10	irgsp1_rep	mRNA	4681868	4682787	.	-	.	ID=Os10t0168000-00;Name=Os10t0168000-00;Locus_id=Os10g0168000;Note=Hypothetical protein.;Transcript_evidence=BT063109 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0168000-00
Chr10	irgsp1_rep	five_prime_UTR	4682723	4682787	.	-	.	Parent=Os10t0168000-00
Chr10	irgsp1_rep	CDS	4682108	4682722	.	-	0	Parent=Os10t0168000-00
Chr10	irgsp1_rep	three_prime_UTR	4681868	4682107	.	-	.	Parent=Os10t0168000-00
Chr10	irgsp1_rep	mRNA	4700780	4701692	.	-	.	ID=Os10t0168200-00;Name=Os10t0168200-00;Locus_id=Os10g0168200;Note=Hypothetical protein.;Transcript_evidence=EU966441 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0168200-00
Chr10	irgsp1_rep	five_prime_UTR	4701565	4701692	.	-	.	Parent=Os10t0168200-00
Chr10	irgsp1_rep	CDS	4701055	4701564	.	-	0	Parent=Os10t0168200-00
Chr10	irgsp1_rep	three_prime_UTR	4700780	4701054	.	-	.	Parent=Os10t0168200-00
Chr10	irgsp1_rep	mRNA	4700928	4701808	.	+	.	ID=Os10t0168300-00;Name=Os10t0168300-00;Locus_id=Os10g0168300;CGSNL Gene Symbol=CHS19;CGSNL Gene Name=CHALCONE SYNTHASE 19;Oryzabase Gene Symbol Synonym(s)=OsCHS19;Oryzabase Gene Name Synonym(s)=Chalcone synthase 19;Note=Similar to Chalcone and stilbene synthases%2C N-terminal domain containing protein.;Transcript_evidence=BT034521 (DDBJ);ORF_evidence=Q7G628 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Chalcone/stilbene synthase%2C N-terminal (IPR001099),Chalcone/stilbene synthase%2C C-terminal (IPR012328),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);Oryzabase=23703;TENOR=Os10t0168300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	4700928	4701058	.	+	.	Parent=Os10t0168300-00
Chr10	irgsp1_rep	CDS	4701059	4701808	.	+	0	Parent=Os10t0168300-00
Chr10	irgsp1_rep	mRNA	4709184	4726168	.	+	.	ID=Os10t0168500-00;Name=Os10t0168500-00;Locus_id=Os10g0168500;CGSNL Gene Symbol=PKS19;CGSNL Gene Name=POLYKETIDE SYNTHASE 19;Oryzabase Gene Symbol Synonym(s)=OsPKS19;Oryzabase Gene Name Synonym(s)=polyketide synthase 19;Note=Similar to Chalcone and stilbene synthases%2C N-terminal domain containing protein.;Transcript_evidence=AK363645 (DDBJ);ORF_evidence=Q7G628 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Chalcone/stilbene synthase%2C N-terminal (IPR001099),Chalcone/stilbene synthase%2C C-terminal (IPR012328),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);Oryzabase=21567;TENOR=Os10t0168500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	4709184	4709439	.	+	.	Parent=Os10t0168500-00
Chr10	irgsp1_rep	CDS	4709440	4709500	.	+	0	Parent=Os10t0168500-00
Chr10	irgsp1_rep	CDS	4725324	4726060	.	+	2	Parent=Os10t0168500-00
Chr10	irgsp1_rep	three_prime_UTR	4726061	4726168	.	+	.	Parent=Os10t0168500-00
Chr10	irgsp1_rep	mRNA	4712692	4713034	.	+	.	ID=Os10t0168550-00;Name=Os10t0168550-00;Locus_id=Os10g0168550;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0004a06 (Wheat FLcDNA);ORF_evidence=Q33AZ2 (UniProt);TENOR=Os10t0168550-00
Chr10	irgsp1_rep	five_prime_UTR	4712692	4712836	.	+	.	Parent=Os10t0168550-00
Chr10	irgsp1_rep	CDS	4712837	4712971	.	+	0	Parent=Os10t0168550-00
Chr10	irgsp1_rep	three_prime_UTR	4712972	4713034	.	+	.	Parent=Os10t0168550-00
Chr10	irgsp1_rep	mRNA	4743725	4744277	.	-	.	ID=Os10t0168751-00;Name=Os10t0168751-00;Locus_id=Os10g0168751;Note=Similar to Osr40g3 protein.;Transcript_evidence=BT017376 (DDBJ);ORF_evidence=O24213 (UniProt);TENOR=Os10t0168751-00
Chr10	irgsp1_rep	CDS	4744000	4744277	.	-	0	Parent=Os10t0168751-00
Chr10	irgsp1_rep	CDS	4743752	4743851	.	-	1	Parent=Os10t0168751-00
Chr10	irgsp1_rep	three_prime_UTR	4743725	4743751	.	-	.	Parent=Os10t0168751-00
Chr10	irgsp1_rep	mRNA	4744350	4747440	.	+	.	ID=Os10t0168900-01;Name=Os10t0168900-01;Locus_id=Os10g0168900;Note=Conserved hypothetical protein.;Transcript_evidence=AK068977 (DDBJ%2C Best hit);ORF_evidence=B9G7P7 (UniProt);NIAS_FLcDNA=J023003D03;TENOR=Os10t0168900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	4744350	4744385	.	+	.	Parent=Os10t0168900-01
Chr10	irgsp1_rep	CDS	4744386	4744724	.	+	0	Parent=Os10t0168900-01
Chr10	irgsp1_rep	three_prime_UTR	4744725	4744755	.	+	.	Parent=Os10t0168900-01
Chr10	irgsp1_rep	three_prime_UTR	4744905	4745396	.	+	.	Parent=Os10t0168900-01
Chr10	irgsp1_rep	three_prime_UTR	4745619	4745817	.	+	.	Parent=Os10t0168900-01
Chr10	irgsp1_rep	three_prime_UTR	4745911	4745996	.	+	.	Parent=Os10t0168900-01
Chr10	irgsp1_rep	three_prime_UTR	4746687	4746924	.	+	.	Parent=Os10t0168900-01
Chr10	irgsp1_rep	three_prime_UTR	4747131	4747440	.	+	.	Parent=Os10t0168900-01
Chr10	irgsp1_rep	mRNA	4757655	4758145	.	+	.	ID=Os10t0169200-01;Name=Os10t0169200-01;Locus_id=Os10g0169200;Oryzabase Gene Name Synonym(s)=lipid transfer protein;Note=Conserved hypothetical protein.;Transcript_evidence=AK107891 (DDBJ%2C Best hit);ORF_evidence=Q33AQ5 (UniProt);NIAS_FLcDNA=002-134-E07;Oryzabase=23039;TENOR=Os10t0169200-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	4757655	4757657	.	+	.	Parent=Os10t0169200-01
Chr10	irgsp1_rep	CDS	4757658	4757954	.	+	0	Parent=Os10t0169200-01
Chr10	irgsp1_rep	three_prime_UTR	4757955	4758145	.	+	.	Parent=Os10t0169200-01
Chr10	irgsp1_rep	mRNA	4783249	4788696	.	+	.	ID=Os10t0169800-01;Name=Os10t0169800-01;Locus_id=Os10g0169800;Note=Alpha/beta hydrolase fold-1 domain containing protein.;Transcript_evidence=AK067281 (DDBJ%2C Best hit);ORF_evidence=NP_001150628.1 (RefSeq);NIAS_FLcDNA=J013100H18;Expression=AK067281;TENOR=Os10t0169800-01;KEGG=Os10t0169800-01
Chr10	irgsp1_rep	five_prime_UTR	4783249	4783308	.	+	.	Parent=Os10t0169800-01
Chr10	irgsp1_rep	CDS	4783309	4783398	.	+	0	Parent=Os10t0169800-01
Chr10	irgsp1_rep	CDS	4784762	4784887	.	+	0	Parent=Os10t0169800-01
Chr10	irgsp1_rep	CDS	4785441	4785539	.	+	0	Parent=Os10t0169800-01
Chr10	irgsp1_rep	CDS	4786460	4786602	.	+	0	Parent=Os10t0169800-01
Chr10	irgsp1_rep	CDS	4787069	4787177	.	+	1	Parent=Os10t0169800-01
Chr10	irgsp1_rep	CDS	4787396	4787503	.	+	0	Parent=Os10t0169800-01
Chr10	irgsp1_rep	CDS	4787840	4787980	.	+	0	Parent=Os10t0169800-01
Chr10	irgsp1_rep	CDS	4788055	4788402	.	+	0	Parent=Os10t0169800-01
Chr10	irgsp1_rep	three_prime_UTR	4788403	4788696	.	+	.	Parent=Os10t0169800-01
Chr10	irgsp1_rep	mRNA	4790746	4792580	.	-	.	ID=Os10t0169900-00;Name=Os10t0169900-00;Locus_id=Os10g0169900;Note=Similar to nitrate and chloride transporter.;Transcript_evidence=EU973328 (DDBJ);ORF_evidence=Q7XGH1 (UniProt);InterPro=Nodulin-like (IPR010658),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);TENOR=Os10t0169900-00;KEGG=Os10t0169900-00
Chr10	irgsp1_rep	five_prime_UTR	4792549	4792580	.	-	.	Parent=Os10t0169900-00
Chr10	irgsp1_rep	CDS	4790746	4792548	.	-	0	Parent=Os10t0169900-00
Chr10	irgsp1_rep	mRNA	4800486	4808319	.	+	.	ID=Os10t0170000-01;Name=Os10t0170000-01;Locus_id=Os10g0170000;Note=Nucleotide-sensitive chloride conductance regulator family protein.;Transcript_evidence=AK121907 (DDBJ%2C Best hit);ORF_evidence=B4FU22 (UniProt);GO=Biological Process: chloride transport (GO:0006821),Biological Process: cell volume homeostasis (GO:0006884);InterPro=Nucleotide-sensitive chloride conductance regulator (IPR003521);NIAS_FLcDNA=J033105N05;Expression=AK121907;TENOR=Os10t0170000-01;KEGG=Os10t0170000-01
Chr10	irgsp1_rep	five_prime_UTR	4800486	4800532	.	+	.	Parent=Os10t0170000-01
Chr10	irgsp1_rep	CDS	4800533	4800693	.	+	0	Parent=Os10t0170000-01
Chr10	irgsp1_rep	CDS	4800797	4800920	.	+	1	Parent=Os10t0170000-01
Chr10	irgsp1_rep	CDS	4806311	4806428	.	+	0	Parent=Os10t0170000-01
Chr10	irgsp1_rep	CDS	4806967	4807026	.	+	2	Parent=Os10t0170000-01
Chr10	irgsp1_rep	CDS	4807096	4807155	.	+	2	Parent=Os10t0170000-01
Chr10	irgsp1_rep	CDS	4807237	4807319	.	+	2	Parent=Os10t0170000-01
Chr10	irgsp1_rep	CDS	4807771	4807842	.	+	0	Parent=Os10t0170000-01
Chr10	irgsp1_rep	three_prime_UTR	4807843	4807847	.	+	.	Parent=Os10t0170000-01
Chr10	irgsp1_rep	three_prime_UTR	4807975	4808319	.	+	.	Parent=Os10t0170000-01
Chr10	irgsp1_rep	mRNA	4832054	4835031	.	+	.	ID=Os10t0170200-01;Name=Os10t0170200-01;Locus_id=Os10g0170200;Note=Similar to 40S ribosomal protein S20 (S22) (Fragment).;Transcript_evidence=AK121628 (DDBJ%2C Best hit);ORF_evidence=B6T6T3 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: small ribosomal subunit (GO:0015935),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S10 (IPR001848),Ribosomal protein S10%2C eukaryotic/archaeal (IPR005729);NIAS_FLcDNA=J033050C15;Expression=AK121628;TENOR=Os10t0170200-01;KEGG=Os10t0170200-01
Chr10	irgsp1_rep	five_prime_UTR	4832054	4832158	.	+	.	Parent=Os10t0170200-01
Chr10	irgsp1_rep	CDS	4832159	4832294	.	+	0	Parent=Os10t0170200-01
Chr10	irgsp1_rep	CDS	4832417	4832530	.	+	2	Parent=Os10t0170200-01
Chr10	irgsp1_rep	CDS	4834678	4834820	.	+	2	Parent=Os10t0170200-01
Chr10	irgsp1_rep	three_prime_UTR	4834821	4835031	.	+	.	Parent=Os10t0170200-01
Chr10	irgsp1_rep	mRNA	4835906	4842231	.	+	.	ID=Os10t0170300-01;Name=Os10t0170300-01;Locus_id=Os10g0170300;Note=Alkaline-phosphatase-like%2C core domain domain containing protein.;Transcript_evidence=AK068119 (DDBJ%2C Best hit);ORF_evidence=B8BFW4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase (IPR002591),Alkaline phosphatase-like%2C alpha/beta/alpha (IPR017849),Alkaline-phosphatase-like%2C core domain (IPR017850);NIAS_FLcDNA=J013134H07;Expression=AK068119;TENOR=Os10t0170300-01;KEGG=Os10t0170300-01
Chr10	irgsp1_rep	five_prime_UTR	4835906	4835928	.	+	.	Parent=Os10t0170300-01
Chr10	irgsp1_rep	CDS	4835929	4836161	.	+	0	Parent=Os10t0170300-01
Chr10	irgsp1_rep	CDS	4836308	4836342	.	+	1	Parent=Os10t0170300-01
Chr10	irgsp1_rep	CDS	4836438	4836559	.	+	2	Parent=Os10t0170300-01
Chr10	irgsp1_rep	CDS	4836802	4836891	.	+	0	Parent=Os10t0170300-01
Chr10	irgsp1_rep	CDS	4837017	4837136	.	+	0	Parent=Os10t0170300-01
Chr10	irgsp1_rep	CDS	4837247	4837330	.	+	0	Parent=Os10t0170300-01
Chr10	irgsp1_rep	CDS	4837429	4837506	.	+	0	Parent=Os10t0170300-01
Chr10	irgsp1_rep	CDS	4837655	4837780	.	+	0	Parent=Os10t0170300-01
Chr10	irgsp1_rep	CDS	4837870	4837959	.	+	0	Parent=Os10t0170300-01
Chr10	irgsp1_rep	CDS	4838489	4838524	.	+	0	Parent=Os10t0170300-01
Chr10	irgsp1_rep	CDS	4838600	4838655	.	+	0	Parent=Os10t0170300-01
Chr10	irgsp1_rep	CDS	4838875	4839022	.	+	1	Parent=Os10t0170300-01
Chr10	irgsp1_rep	CDS	4839103	4839571	.	+	0	Parent=Os10t0170300-01
Chr10	irgsp1_rep	CDS	4839661	4839752	.	+	2	Parent=Os10t0170300-01
Chr10	irgsp1_rep	CDS	4839865	4840417	.	+	0	Parent=Os10t0170300-01
Chr10	irgsp1_rep	CDS	4840555	4840690	.	+	2	Parent=Os10t0170300-01
Chr10	irgsp1_rep	CDS	4840901	4840942	.	+	1	Parent=Os10t0170300-01
Chr10	irgsp1_rep	CDS	4841031	4841199	.	+	1	Parent=Os10t0170300-01
Chr10	irgsp1_rep	CDS	4841777	4841860	.	+	0	Parent=Os10t0170300-01
Chr10	irgsp1_rep	CDS	4841966	4842061	.	+	0	Parent=Os10t0170300-01
Chr10	irgsp1_rep	three_prime_UTR	4842062	4842231	.	+	.	Parent=Os10t0170300-01
Chr10	irgsp1_rep	mRNA	4848139	4849125	.	-	.	ID=Os10t0170501-00;Name=Os10t0170501-00;Locus_id=Os10g0170501;Note=Conserved hypothetical protein.;Transcript_evidence=AK367196 (DDBJ);ORF_evidence=Q8LNL0 (UniProt);TENOR=Os10t0170501-00
Chr10	irgsp1_rep	CDS	4848502	4849125	.	-	0	Parent=Os10t0170501-00
Chr10	irgsp1_rep	three_prime_UTR	4848139	4848501	.	-	.	Parent=Os10t0170501-00
Chr10	irgsp1_rep	mRNA	4914321	4915824	.	-	.	ID=Os10t0171300-01;Name=Os10t0171300-01;Locus_id=Os10g0171300;Note=CytoChrome P450 family protein.;Transcript_evidence=AK070240 (DDBJ%2C Best hit);ORF_evidence=Q8LNK1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J023047K04;Expression=AK070240;TENOR=Os10t0171300-01;KEGG=Os10t0171300-01
Chr10	irgsp1_rep	five_prime_UTR	4915824	4915824	.	-	.	Parent=Os10t0171300-01
Chr10	irgsp1_rep	CDS	4915539	4915823	.	-	0	Parent=Os10t0171300-01
Chr10	irgsp1_rep	CDS	4914749	4915222	.	-	0	Parent=Os10t0171300-01
Chr10	irgsp1_rep	three_prime_UTR	4914321	4914748	.	-	.	Parent=Os10t0171300-01
Chr10	irgsp1_rep	mRNA	4930205	4931157	.	-	.	ID=Os10t0171500-01;Name=Os10t0171500-01;Locus_id=Os10g0171500;Note=Similar to CytoChrome P450 CYP76H18.;Transcript_evidence=AK073585 (DDBJ%2C Best hit);ORF_evidence=B6TJP9 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);NIAS_FLcDNA=J033052E03;Expression=AK073585;TENOR=Os10t0171500-01;KEGG=Os10t0171500-01
Chr10	irgsp1_rep	five_prime_UTR	4931140	4931157	.	-	.	Parent=Os10t0171500-01
Chr10	irgsp1_rep	CDS	4930216	4931139	.	-	0	Parent=Os10t0171500-01
Chr10	irgsp1_rep	three_prime_UTR	4930205	4930215	.	-	.	Parent=Os10t0171500-01
Chr10	irgsp1_rep	mRNA	4929261	4931155	.	-	.	ID=Os10t0171500-02;Name=Os10t0171500-02;Locus_id=Os10g0171500;Note=Similar to CytoChrome P450 family protein%2C expressed.;Transcript_evidence=AK058441 (DDBJ%2C Best hit);ORF_evidence=Q33AN0 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);NIAS_FLcDNA=001-015-G01;TENOR=Os10t0171500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	4931140	4931155	.	-	.	Parent=Os10t0171500-02
Chr10	irgsp1_rep	CDS	4930261	4931139	.	-	0	Parent=Os10t0171500-02
Chr10	irgsp1_rep	CDS	4929723	4929908	.	-	0	Parent=Os10t0171500-02
Chr10	irgsp1_rep	three_prime_UTR	4929261	4929722	.	-	.	Parent=Os10t0171500-02
Chr10	irgsp1_rep	mRNA	4946821	4948377	.	-	.	ID=Os10t0172000-00;Name=Os10t0172000-00;Locus_id=Os10g0172000;Note=Hypothetical protein.;Transcript_evidence=tplb0024g24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0172000-00
Chr10	irgsp1_rep	five_prime_UTR	4947823	4948377	.	-	.	Parent=Os10t0172000-00
Chr10	irgsp1_rep	five_prime_UTR	4947082	4947727	.	-	.	Parent=Os10t0172000-00
Chr10	irgsp1_rep	CDS	4946866	4947081	.	-	0	Parent=Os10t0172000-00
Chr10	irgsp1_rep	three_prime_UTR	4946821	4946865	.	-	.	Parent=Os10t0172000-00
Chr10	irgsp1_rep	mRNA	4946876	4950594	.	+	.	ID=Os10t0172100-00;Name=Os10t0172100-00;Locus_id=Os10g0172100;Note=Similar to CytoChrome P450 family protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q33AM7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os10t0172100-00
Chr10	irgsp1_rep	CDS	4946876	4947697	.	+	0	Parent=Os10t0172100-00
Chr10	irgsp1_rep	CDS	4947788	4947919	.	+	0	Parent=Os10t0172100-00
Chr10	irgsp1_rep	CDS	4947959	4948220	.	+	0	Parent=Os10t0172100-00
Chr10	irgsp1_rep	CDS	4950563	4950594	.	+	2	Parent=Os10t0172100-00
Chr10	irgsp1_rep	mRNA	4966210	4969540	.	+	.	ID=Os10t0172600-01;Name=Os10t0172600-01;Locus_id=Os10g0172600;Note=Similar to zinc finger (C3HC4-type RING finger) family protein.;Transcript_evidence=AK103811 (DDBJ%2C Best hit);ORF_evidence=NP_973461.1 (RefSeq);NIAS_FLcDNA=J033147B10;TENOR=Os10t0172600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	4966210	4967146	.	+	.	Parent=Os10t0172600-01
Chr10	irgsp1_rep	five_prime_UTR	4967231	4967276	.	+	.	Parent=Os10t0172600-01
Chr10	irgsp1_rep	CDS	4967277	4967318	.	+	0	Parent=Os10t0172600-01
Chr10	irgsp1_rep	CDS	4968303	4968383	.	+	0	Parent=Os10t0172600-01
Chr10	irgsp1_rep	CDS	4969155	4969232	.	+	0	Parent=Os10t0172600-01
Chr10	irgsp1_rep	three_prime_UTR	4969233	4969540	.	+	.	Parent=Os10t0172600-01
Chr10	irgsp1_rep	mRNA	4994500	4995160	.	-	.	ID=Os10t0173000-01;Name=Os10t0173000-01;Locus_id=Os10g0173000;Note=Conserved hypothetical protein.;Transcript_evidence=AK111271 (DDBJ%2C Best hit);ORF_evidence=A2XRN3 (UniProt);NIAS_FLcDNA=002-180-F12;Expression=AK111271;TENOR=Os10t0173000-01;KEGG=Os10t0173000-01
Chr10	irgsp1_rep	five_prime_UTR	4995136	4995160	.	-	.	Parent=Os10t0173000-01
Chr10	irgsp1_rep	CDS	4994725	4995135	.	-	0	Parent=Os10t0173000-01
Chr10	irgsp1_rep	three_prime_UTR	4994500	4994724	.	-	.	Parent=Os10t0173000-01
Chr10	irgsp1_rep	mRNA	5055323	5055736	.	-	.	ID=Os10t0173800-00;Name=Os10t0173800-00;Locus_id=Os10g0173800;Note=SAM dependent carboxyl methyltransferase domain containing protein.;Transcript_evidence=EU946257 (DDBJ);ORF_evidence=Q8RV71 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=SAM dependent carboxyl methyltransferase (IPR005299);TENOR=Os10t0173800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	5055323	5055736	.	-	0	Parent=Os10t0173800-00
Chr10	irgsp1_rep	mRNA	5157636	5164933	.	-	.	ID=Os10t0174548-00;Name=Os10t0174548-00;Locus_id=Os10g0174548;CGSNL Gene Symbol=WAK107;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 107;Oryzabase Gene Symbol Synonym(s)=OsWAK107;Note=Similar to Calcium binding EGF domain containing protein.;Transcript_evidence=AK364262 (DDBJ);ORF_evidence=Q33AJ9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=EGF-type aspartate/asparagine hydroxylation site (IPR000152),Protein kinase%2C catalytic domain (IPR000719),Epidermal growth factor-like%2C type 3 (IPR000742),Serine-threonine/tyrosine-protein kinase (IPR001245),EGF-like calcium-binding (IPR001881),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),EGF-like calcium-binding%2C conserved site (IPR018097),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=8025;TENOR=Os10t0174548-00
Chr10	irgsp1_rep	CDS	5163877	5164933	.	-	0	Parent=Os10t0174548-00
Chr10	irgsp1_rep	CDS	5159431	5159598	.	-	2	Parent=Os10t0174548-00
Chr10	irgsp1_rep	CDS	5158446	5158894	.	-	2	Parent=Os10t0174548-00
Chr10	irgsp1_rep	CDS	5157636	5158289	.	-	0	Parent=Os10t0174548-00
Chr10	irgsp1_rep	mRNA	5157772	5164219	.	+	.	ID=Os10t0174624-00;Name=Os10t0174624-00;Locus_id=Os10g0174624;Note=Hypothetical protein.;Transcript_evidence=tplb0029l08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0174624-00
Chr10	irgsp1_rep	five_prime_UTR	5157772	5157911	.	+	.	Parent=Os10t0174624-00
Chr10	irgsp1_rep	CDS	5157912	5158148	.	+	0	Parent=Os10t0174624-00
Chr10	irgsp1_rep	three_prime_UTR	5158149	5158297	.	+	.	Parent=Os10t0174624-00
Chr10	irgsp1_rep	three_prime_UTR	5158443	5158900	.	+	.	Parent=Os10t0174624-00
Chr10	irgsp1_rep	three_prime_UTR	5159426	5159605	.	+	.	Parent=Os10t0174624-00
Chr10	irgsp1_rep	three_prime_UTR	5163863	5164219	.	+	.	Parent=Os10t0174624-00
Chr10	irgsp1_rep	mRNA	5198971	5204584	.	+	.	ID=Os10t0174751-00;Name=Os10t0174751-00;Locus_id=Os10g0174751;Note=Hypothetical protein.;Transcript_evidence=tplb0029l08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0174751-00
Chr10	irgsp1_rep	five_prime_UTR	5198971	5199969	.	+	.	Parent=Os10t0174751-00
Chr10	irgsp1_rep	five_prime_UTR	5203120	5203283	.	+	.	Parent=Os10t0174751-00
Chr10	irgsp1_rep	five_prime_UTR	5203640	5204205	.	+	.	Parent=Os10t0174751-00
Chr10	irgsp1_rep	CDS	5204206	5204584	.	+	0	Parent=Os10t0174751-00
Chr10	irgsp1_rep	mRNA	5201057	5203914	.	-	.	ID=Os10t0174800-00;Name=Os10t0174800-00;Locus_id=Os10g0174800;CGSNL Gene Symbol=WAK108;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 108;Oryzabase Gene Symbol Synonym(s)=OsWAK108;Note=Similar to Protein kinase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XH75 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515);InterPro=EGF-type aspartate/asparagine hydroxylation site (IPR000152),Epidermal growth factor-like%2C type 3 (IPR000742),EGF-like calcium-binding (IPR001881),Epidermal growth factor-like (IPR006210),EGF-like calcium-binding%2C conserved site (IPR018097);Oryzabase=8026;TENOR=Os10t0174800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	5203647	5203914	.	-	0	Parent=Os10t0174800-00
Chr10	irgsp1_rep	CDS	5203096	5203281	.	-	2	Parent=Os10t0174800-00
Chr10	irgsp1_rep	CDS	5201057	5201205	.	-	2	Parent=Os10t0174800-00
Chr10	irgsp1_rep	mRNA	5217650	5218006	.	+	.	ID=Os10t0175066-00;Name=Os10t0175066-00;Locus_id=Os10g0175066;Note=Similar to seed specific protein Bn15D17A.;Transcript_evidence=AK363859 (DDBJ);ORF_evidence=NP_001152326.1 (RefSeq);TENOR=Os10t0175066-00
Chr10	irgsp1_rep	CDS	5217650	5217970	.	+	0	Parent=Os10t0175066-00
Chr10	irgsp1_rep	three_prime_UTR	5217971	5218006	.	+	.	Parent=Os10t0175066-00
Chr10	irgsp1_rep	mRNA	5236268	5237084	.	+	.	ID=Os10t0175500-01;Name=Os10t0175500-01;Locus_id=Os10g0175500;Note=Hypothetical gene.;Transcript_evidence=AK066649 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013074J06;Expression=AK066649;TENOR=Os10t0175500-01;KEGG=Os10t0175500-01
Chr10	irgsp1_rep	five_prime_UTR	5236268	5236269	.	+	.	Parent=Os10t0175500-01
Chr10	irgsp1_rep	CDS	5236270	5236494	.	+	0	Parent=Os10t0175500-01
Chr10	irgsp1_rep	three_prime_UTR	5236495	5237084	.	+	.	Parent=Os10t0175500-01
Chr10	irgsp1_rep	mRNA	5237690	5245182	.	-	.	ID=Os10t0175700-00;Name=Os10t0175700-00;Locus_id=Os10g0175700;Note=Hypothetical protein.;Transcript_evidence=tplb0029l08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0175700-00
Chr10	irgsp1_rep	five_prime_UTR	5244350	5245182	.	-	.	Parent=Os10t0175700-00
Chr10	irgsp1_rep	CDS	5244191	5244349	.	-	0	Parent=Os10t0175700-00
Chr10	irgsp1_rep	CDS	5243420	5243530	.	-	0	Parent=Os10t0175700-00
Chr10	irgsp1_rep	three_prime_UTR	5243361	5243419	.	-	.	Parent=Os10t0175700-00
Chr10	irgsp1_rep	three_prime_UTR	5237690	5238553	.	-	.	Parent=Os10t0175700-00
Chr10	irgsp1_rep	mRNA	5247357	5248013	.	+	.	ID=Os10t0175800-00;Name=Os10t0175800-00;Locus_id=Os10g0175800;Note=Similar to nodulin protein.;Transcript_evidence=EU951226 (DDBJ);ORF_evidence=NP_001148990.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);TENOR=Os10t0175800-00;KEGG=Os10t0175800-00
Chr10	irgsp1_rep	CDS	5247357	5247524	.	+	0	Parent=Os10t0175800-00
Chr10	irgsp1_rep	CDS	5247621	5247772	.	+	0	Parent=Os10t0175800-00
Chr10	irgsp1_rep	CDS	5247859	5247913	.	+	1	Parent=Os10t0175800-00
Chr10	irgsp1_rep	three_prime_UTR	5247914	5248013	.	+	.	Parent=Os10t0175800-00
Chr10	irgsp1_rep	mRNA	5278190	5278771	.	+	.	ID=Os10t0176300-00;Name=Os10t0176300-00;Locus_id=Os10g0176300;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q33AI9 (UniProt);TENOR=Os10t0176300-00;KEGG=Os10t0176300-00
Chr10	irgsp1_rep	CDS	5278190	5278771	.	+	0	Parent=Os10t0176300-00
Chr10	irgsp1_rep	mRNA	5287364	5287771	.	+	.	ID=Os10t0176550-00;Name=Os10t0176550-00;Locus_id=Os10g0176550;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os10t0176550-00;KEGG=Os10t0176550-00
Chr10	irgsp1_rep	CDS	5287364	5287771	.	+	0	Parent=Os10t0176550-00
Chr10	irgsp1_rep	mRNA	5288765	5290390	.	+	.	ID=Os10t0176700-01;Name=Os10t0176700-01;Locus_id=Os10g0176700;Note=Hypothetical conserved gene.;Transcript_evidence=AK242670 (DDBJ%2C Best hit);ORF_evidence=NP_001174467.1 (RefSeq);NIAS_FLcDNA=J090030G21;TENOR=Os10t0176700-01;KEGG=Os10t0176700-01
Chr10	irgsp1_rep	five_prime_UTR	5288765	5289278	.	+	.	Parent=Os10t0176700-01
Chr10	irgsp1_rep	five_prime_UTR	5289894	5289955	.	+	.	Parent=Os10t0176700-01
Chr10	irgsp1_rep	CDS	5289956	5290207	.	+	0	Parent=Os10t0176700-01
Chr10	irgsp1_rep	three_prime_UTR	5290208	5290390	.	+	.	Parent=Os10t0176700-01
Chr10	irgsp1_rep	mRNA	5290779	5290829	.	-	.	ID=Os10t0176800-00;Name=Os10t0176800-00;Locus_id=Os10g0176800;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0176800-00
Chr10	irgsp1_rep	exon	5290779	5290829	.	-	.	Parent=Os10t0176800-00
Chr10	irgsp1_rep	mRNA	5291238	5291301	.	+	.	ID=Os10t0176900-00;Name=Os10t0176900-00;Locus_id=Os10g0176900;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0176900-00
Chr10	irgsp1_rep	exon	5291238	5291301	.	+	.	Parent=Os10t0176900-00
Chr10	irgsp1_rep	mRNA	5325563	5329971	.	-	.	ID=Os10t0177200-02;Name=Os10t0177200-02;Locus_id=Os10g0177200;Oryzabase Gene Symbol Synonym(s)=OsDSR-1%2C DSR-1;Oryzabase Gene Name Synonym(s)=drought stress response-1;Note=EF-HAND 2 domain containing protein.;Transcript_evidence=AK064016 (DDBJ%2C Best hit),AK102990 (DDBJ%2C Best hit);ORF_evidence=B6SSF5 (UniProt);NIAS_FLcDNA=001-124-H07,J033116D13;Oryzabase=9484;Expression=AK064016;TENOR=Os10t0177200-02;KEGG=Os10t0177200-02
Chr10	irgsp1_rep	five_prime_UTR	5329905	5329971	.	-	.	Parent=Os10t0177200-02
Chr10	irgsp1_rep	five_prime_UTR	5329732	5329802	.	-	.	Parent=Os10t0177200-02
Chr10	irgsp1_rep	CDS	5329450	5329731	.	-	0	Parent=Os10t0177200-02
Chr10	irgsp1_rep	CDS	5326868	5327164	.	-	0	Parent=Os10t0177200-02
Chr10	irgsp1_rep	CDS	5326485	5326703	.	-	0	Parent=Os10t0177200-02
Chr10	irgsp1_rep	CDS	5326251	5326376	.	-	0	Parent=Os10t0177200-02
Chr10	irgsp1_rep	CDS	5325907	5326143	.	-	0	Parent=Os10t0177200-02
Chr10	irgsp1_rep	three_prime_UTR	5325563	5325906	.	-	.	Parent=Os10t0177200-02
Chr10	irgsp1_rep	mRNA	5334799	5336178	.	-	.	ID=Os10t0177300-00;Name=Os10t0177300-00;Locus_id=Os10g0177300;CGSNL Gene Symbol=PKS20;CGSNL Gene Name=POLYKETIDE SYNTHASE 20;Oryzabase Gene Symbol Synonym(s)=OsPKS20%2C OsCHS21%2C CHS21;Oryzabase Gene Name Synonym(s)=polyketide synthase 20%2C Chalcone synthase 21;Note=Similar to Chalcone and stilbene synthases%2C N-terminal domain containing protein.;Transcript_evidence=AK363645 (DDBJ);ORF_evidence=Q7G628 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Chalcone/stilbene synthase%2C N-terminal (IPR001099),Chalcone/stilbene synthase%2C C-terminal (IPR012328),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);Oryzabase=21568;TENOR=Os10t0177300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	5335956	5336178	.	-	.	Parent=Os10t0177300-00
Chr10	irgsp1_rep	five_prime_UTR	5335753	5335842	.	-	.	Parent=Os10t0177300-00
Chr10	irgsp1_rep	CDS	5334799	5335752	.	-	0	Parent=Os10t0177300-00
Chr10	irgsp1_rep	mRNA	5344487	5346935	.	-	.	ID=Os10t0177400-01;Name=Os10t0177400-01;Locus_id=Os10g0177400;Note=TB2/DP1 and HVA22 related protein family protein.;Transcript_evidence=AK064459 (DDBJ%2C Best hit);ORF_evidence=Q7XGB3 (UniProt);InterPro=TB2/DP1/HVA22-related protein (IPR004345);NIAS_FLcDNA=002-110-G03;Expression=AK064459;TENOR=Os10t0177400-01;KEGG=Os10t0177400-01
Chr10	irgsp1_rep	five_prime_UTR	5346728	5346935	.	-	.	Parent=Os10t0177400-01
Chr10	irgsp1_rep	five_prime_UTR	5346634	5346644	.	-	.	Parent=Os10t0177400-01
Chr10	irgsp1_rep	CDS	5346602	5346633	.	-	0	Parent=Os10t0177400-01
Chr10	irgsp1_rep	CDS	5345879	5345977	.	-	1	Parent=Os10t0177400-01
Chr10	irgsp1_rep	CDS	5345735	5345791	.	-	1	Parent=Os10t0177400-01
Chr10	irgsp1_rep	CDS	5345588	5345651	.	-	1	Parent=Os10t0177400-01
Chr10	irgsp1_rep	CDS	5345059	5345508	.	-	0	Parent=Os10t0177400-01
Chr10	irgsp1_rep	three_prime_UTR	5344487	5345058	.	-	.	Parent=Os10t0177400-01
Chr10	irgsp1_rep	mRNA	5341017	5346863	.	-	.	ID=Os10t0177400-02;Name=Os10t0177400-02;Locus_id=Os10g0177400;Note=Similar to TB2/DP1%2C HVA22 family protein%2C expressed.;Transcript_evidence=AK121849 (DDBJ%2C Best hit);ORF_evidence=Q7XGB3 (UniProt);InterPro=TB2/DP1/HVA22-related protein (IPR004345);NIAS_FLcDNA=J033101L11;Expression=AK121849;TENOR=Os10t0177400-02;KEGG=Os10t0177400-02
Chr10	irgsp1_rep	five_prime_UTR	5346728	5346863	.	-	.	Parent=Os10t0177400-02
Chr10	irgsp1_rep	five_prime_UTR	5346634	5346648	.	-	.	Parent=Os10t0177400-02
Chr10	irgsp1_rep	CDS	5346602	5346633	.	-	0	Parent=Os10t0177400-02
Chr10	irgsp1_rep	CDS	5345879	5345977	.	-	1	Parent=Os10t0177400-02
Chr10	irgsp1_rep	CDS	5345735	5345791	.	-	1	Parent=Os10t0177400-02
Chr10	irgsp1_rep	CDS	5345588	5345651	.	-	1	Parent=Os10t0177400-02
Chr10	irgsp1_rep	CDS	5345290	5345508	.	-	0	Parent=Os10t0177400-02
Chr10	irgsp1_rep	CDS	5341325	5341900	.	-	0	Parent=Os10t0177400-02
Chr10	irgsp1_rep	three_prime_UTR	5341017	5341324	.	-	.	Parent=Os10t0177400-02
Chr10	irgsp1_rep	mRNA	5369238	5369624	.	+	.	ID=Os10t0178000-00;Name=Os10t0178000-00;Locus_id=Os10g0178000;CGSNL Gene Symbol=HYPRP26;CGSNL Gene Name=HYBRID PROLINE-RICH PROTEIN 26;Oryzabase Gene Symbol Synonym(s)=OsHyPRP26%2C HyPRP26;Oryzabase Gene Name Synonym(s)=Hybrid Proline-Rich Protein 26;Note=Similar to Proline-rich protein.;Transcript_evidence=ab initio prediction;ORF_evidence=C3SAB6 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);Oryzabase=23417;TENOR=Os10t0178000-00;KEGG=Os10t0178000-00
Chr10	irgsp1_rep	CDS	5369238	5369624	.	+	0	Parent=Os10t0178000-00
Chr10	irgsp1_rep	mRNA	5373153	5376610	.	-	.	ID=Os10t0178101-01;Name=Os10t0178101-01;Locus_id=Os10g0178101;Note=Hypothetical gene.;Transcript_evidence=AK287770 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065166O14;TENOR=Os10t0178101-01;KEGG=Os10t0178101-01
Chr10	irgsp1_rep	CDS	5376441	5376610	.	-	0	Parent=Os10t0178101-01
Chr10	irgsp1_rep	CDS	5374199	5374280	.	-	1	Parent=Os10t0178101-01
Chr10	irgsp1_rep	three_prime_UTR	5373153	5374198	.	-	.	Parent=Os10t0178101-01
Chr10	irgsp1_rep	mRNA	5379744	5380722	.	+	.	ID=Os10t0178200-01;Name=Os10t0178200-01;Locus_id=Os10g0178200;Note=Ankyrin repeat containing protein.;Transcript_evidence=AK106781 (DDBJ%2C Best hit);ORF_evidence=A2Z5G8 (UniProt);NIAS_FLcDNA=002-115-H06;Expression=AK106781;TENOR=Os10t0178200-01;KEGG=Os10t0178200-01
Chr10	irgsp1_rep	five_prime_UTR	5379744	5379849	.	+	.	Parent=Os10t0178200-01
Chr10	irgsp1_rep	CDS	5379850	5379857	.	+	0	Parent=Os10t0178200-01
Chr10	irgsp1_rep	CDS	5379971	5380562	.	+	1	Parent=Os10t0178200-01
Chr10	irgsp1_rep	three_prime_UTR	5380563	5380722	.	+	.	Parent=Os10t0178200-01
Chr10	irgsp1_rep	mRNA	5412580	5414295	.	+	.	ID=Os10t0178500-01;Name=Os10t0178500-01;Locus_id=Os10g0178500;CGSNL Gene Symbol=UGT99B3;CGSNL Gene Name=UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 98B3;Oryzabase Gene Symbol Synonym(s)=OsUGT98B3;Oryzabase Gene Name Synonym(s)=UDP-glucose-dependent glycosyltransferase 98B3;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK066178 (DDBJ%2C Best hit);ORF_evidence=NP_001148195.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J013058P11;Oryzabase=21814;Expression=AK066178;TENOR=Os10t0178500-01;KEGG=Os10t0178500-01
Chr10	irgsp1_rep	five_prime_UTR	5412580	5412604	.	+	.	Parent=Os10t0178500-01
Chr10	irgsp1_rep	CDS	5412605	5414191	.	+	0	Parent=Os10t0178500-01
Chr10	irgsp1_rep	three_prime_UTR	5414192	5414295	.	+	.	Parent=Os10t0178500-01
Chr10	irgsp1_rep	mRNA	5442144	5449074	.	-	.	ID=Os10t0178800-01;Name=Os10t0178800-01;Locus_id=Os10g0178800;CGSNL Gene Symbol=WAK111;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 111;Oryzabase Gene Symbol Synonym(s)=OsWAK111;Note=Hypothetical conserved gene.;Transcript_evidence=AK240770 (DDBJ%2C Best hit);ORF_evidence=NP_001064249.1 (RefSeq);NIAS_FLcDNA=J053063O15;Oryzabase=8028;TENOR=Os10t0178800-01;KEGG=Os10t0178800-01
Chr10	irgsp1_rep	five_prime_UTR	5448998	5449074	.	-	.	Parent=Os10t0178800-01
Chr10	irgsp1_rep	CDS	5448004	5448997	.	-	0	Parent=Os10t0178800-01
Chr10	irgsp1_rep	CDS	5444383	5444561	.	-	2	Parent=Os10t0178800-01
Chr10	irgsp1_rep	CDS	5444267	5444305	.	-	0	Parent=Os10t0178800-01
Chr10	irgsp1_rep	three_prime_UTR	5444043	5444266	.	-	.	Parent=Os10t0178800-01
Chr10	irgsp1_rep	three_prime_UTR	5443668	5443820	.	-	.	Parent=Os10t0178800-01
Chr10	irgsp1_rep	three_prime_UTR	5442144	5443545	.	-	.	Parent=Os10t0178800-01
Chr10	irgsp1_rep	mRNA	5442401	5444221	.	+	.	ID=Os10t0179000-00;Name=Os10t0179000-00;Locus_id=Os10g0179000;Note=Hypothetical protein.;Transcript_evidence=FP093119 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0179000-00
Chr10	irgsp1_rep	five_prime_UTR	5442401	5443021	.	+	.	Parent=Os10t0179000-00
Chr10	irgsp1_rep	five_prime_UTR	5443983	5443995	.	+	.	Parent=Os10t0179000-00
Chr10	irgsp1_rep	CDS	5443996	5444221	.	+	0	Parent=Os10t0179000-00
Chr10	irgsp1_rep	mRNA	5460924	5467233	.	-	.	ID=Os10t0179200-00;Name=Os10t0179200-00;Locus_id=Os10g0179200;Note=Similar to cytoChrome P450.;Transcript_evidence=ab initio prediction;ORF_evidence=XP_002299557.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: monooxygenase activity (GO:0004497),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C B-class (IPR002397),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os10t0179200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	5466940	5467233	.	-	0	Parent=Os10t0179200-00
Chr10	irgsp1_rep	CDS	5466331	5466480	.	-	0	Parent=Os10t0179200-00
Chr10	irgsp1_rep	CDS	5463934	5464188	.	-	0	Parent=Os10t0179200-00
Chr10	irgsp1_rep	CDS	5463306	5463395	.	-	0	Parent=Os10t0179200-00
Chr10	irgsp1_rep	CDS	5463088	5463166	.	-	0	Parent=Os10t0179200-00
Chr10	irgsp1_rep	CDS	5462631	5462737	.	-	2	Parent=Os10t0179200-00
Chr10	irgsp1_rep	CDS	5461793	5461892	.	-	0	Parent=Os10t0179200-00
Chr10	irgsp1_rep	CDS	5461433	5461491	.	-	2	Parent=Os10t0179200-00
Chr10	irgsp1_rep	CDS	5460924	5460935	.	-	0	Parent=Os10t0179200-00
Chr10	irgsp1_rep	mRNA	5487011	5490446	.	-	.	ID=Os10t0180000-01;Name=Os10t0180000-01;Locus_id=Os10g0180000;Oryzabase Gene Symbol Synonym(s)=OsGUT1%2C GUT1;Oryzabase Gene Name Synonym(s)=glucuronyltransferase 1;Note=NpGUT1 homolog.;Transcript_evidence=AK070803 (DDBJ%2C Best hit);ORF_evidence=B6TI34 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);NIAS_FLcDNA=J023069D21;Oryzabase=20148;Expression=AK070803;TENOR=Os10t0180000-01;KEGG=Os10t0180000-01
Chr10	irgsp1_rep	five_prime_UTR	5490301	5490446	.	-	.	Parent=Os10t0180000-01
Chr10	irgsp1_rep	CDS	5490168	5490300	.	-	0	Parent=Os10t0180000-01
Chr10	irgsp1_rep	CDS	5489018	5489382	.	-	2	Parent=Os10t0180000-01
Chr10	irgsp1_rep	CDS	5488170	5488411	.	-	0	Parent=Os10t0180000-01
Chr10	irgsp1_rep	CDS	5487354	5487867	.	-	1	Parent=Os10t0180000-01
Chr10	irgsp1_rep	three_prime_UTR	5487011	5487353	.	-	.	Parent=Os10t0180000-01
Chr10	irgsp1_rep	mRNA	5487017	5489303	.	-	.	ID=Os10t0180000-02;Name=Os10t0180000-02;Locus_id=Os10g0180000;Oryzabase Gene Symbol Synonym(s)=OsGUT1%2C GUT1;Oryzabase Gene Name Synonym(s)=glucuronyltransferase 1;Note=Similar to secondary cell wall-related glycosyltransferase family 47.;Transcript_evidence=AK109393 (DDBJ%2C Best hit);ORF_evidence=B6TI34 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);NIAS_FLcDNA=006-212-A02;Oryzabase=20148;Expression=AK109393;TENOR=Os10t0180000-02;KEGG=Os10t0180000-02
Chr10	irgsp1_rep	five_prime_UTR	5489303	5489303	.	-	.	Parent=Os10t0180000-02
Chr10	irgsp1_rep	CDS	5489018	5489302	.	-	0	Parent=Os10t0180000-02
Chr10	irgsp1_rep	CDS	5488170	5488411	.	-	0	Parent=Os10t0180000-02
Chr10	irgsp1_rep	CDS	5487354	5487867	.	-	1	Parent=Os10t0180000-02
Chr10	irgsp1_rep	three_prime_UTR	5487017	5487353	.	-	.	Parent=Os10t0180000-02
Chr10	irgsp1_rep	mRNA	5534158	5538706	.	+	.	ID=Os10t0180600-00;Name=Os10t0180600-00;Locus_id=Os10g0180600;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001176047.1 (RefSeq);TENOR=Os10t0180600-00
Chr10	irgsp1_rep	CDS	5534158	5534241	.	+	0	Parent=Os10t0180600-00
Chr10	irgsp1_rep	CDS	5538557	5538706	.	+	0	Parent=Os10t0180600-00
Chr10	irgsp1_rep	mRNA	5539743	5544578	.	-	.	ID=Os10t0180800-01;Name=Os10t0180800-01;Locus_id=Os10g0180800;RAP-DB Gene Symbol Synonym(s)=WAK112%2C OsWAK112%2C OsWAK112d;RAP-DB Gene Name Synonym(s)=WALL-ASSOCIATED KINASE GENE 112%2C cell wall associated receptor kinase 112%2C cell wall associated receptor kinase 112d;CGSNL Gene Symbol=WAK112;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 112;Oryzabase Gene Symbol Synonym(s)=OsWAK112%2C OsWAK112d;Oryzabase Gene Name Synonym(s)=cell wall associated receptor kinase 112%2C cell wall associated receptor kinase 112d;Note=Wall-associated kinase%2C Negative regulation of rice blast resistance;Transcript_evidence=AK099018;ORF_evidence=Q33AH5;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: polysaccharide binding (GO:0030247);InterPro=Wall-associated receptor kinase%2C galacturonan-binding domain (IPR025287),EGF-like domain (IPR000742),Growth factor receptor cysteine-rich domain (IPR009030),EGF-like calcium-binding domain (IPR001881),Concanavalin A-like lectin/glucanase domain (IPR013320),Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine/threonine/dual specificity protein kinase%2C catalytic  domain (IPR002290),EGF-like calcium-binding%2C conserved site (IPR018097),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J013116L16;Manual Curation=January 27%2C 2016;Literature_PMID=26772971;Oryzabase=8029;TENOR=Os10t0180800-01
Chr10	irgsp1_rep	five_prime_UTR	5544561	5544578	.	-	.	Parent=Os10t0180800-01
Chr10	irgsp1_rep	CDS	5543483	5544560	.	-	0	Parent=Os10t0180800-01
Chr10	irgsp1_rep	CDS	5541807	5542298	.	-	2	Parent=Os10t0180800-01
Chr10	irgsp1_rep	CDS	5541184	5541336	.	-	2	Parent=Os10t0180800-01
Chr10	irgsp1_rep	CDS	5539842	5541100	.	-	2	Parent=Os10t0180800-01
Chr10	irgsp1_rep	three_prime_UTR	5539743	5539841	.	-	.	Parent=Os10t0180800-01
Chr10	irgsp1_rep	mRNA	5539743	5544572	.	-	.	ID=Os10t0180800-02;Name=Os10t0180800-02;Locus_id=Os10g0180800;CGSNL Gene Symbol=WAK112;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 112;Oryzabase Gene Symbol Synonym(s)=OsWAK112%2C OsWAK112d;Oryzabase Gene Name Synonym(s)=cell wall associated receptor kinase 112%2C cell wall associated receptor kinase 112d;Note=Similar to Calcium binding EGF domain containing protein%2C expressed.;Transcript_evidence=AK111809 (DDBJ%2C Best hit);ORF_evidence=Q10A19 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),EGF-like calcium-binding (IPR001881),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EGF-like calcium-binding%2C conserved site (IPR018097);NIAS_FLcDNA=J013116E20;Oryzabase=8029;Expression=AK111809;TENOR=Os10t0180800-02;KEGG=Os10t0180800-02
Chr10	irgsp1_rep	five_prime_UTR	5541425	5544572	.	-	.	Parent=Os10t0180800-02
Chr10	irgsp1_rep	CDS	5541184	5541424	.	-	0	Parent=Os10t0180800-02
Chr10	irgsp1_rep	CDS	5539842	5541100	.	-	2	Parent=Os10t0180800-02
Chr10	irgsp1_rep	three_prime_UTR	5539743	5539841	.	-	.	Parent=Os10t0180800-02
Chr10	irgsp1_rep	mRNA	5539745	5542275	.	-	.	ID=Os10t0180800-03;Name=Os10t0180800-03;Locus_id=Os10g0180800;CGSNL Gene Symbol=WAK112;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 112;Oryzabase Gene Symbol Synonym(s)=OsWAK112%2C OsWAK112d;Oryzabase Gene Name Synonym(s)=cell wall associated receptor kinase 112%2C cell wall associated receptor kinase 112d;Note=Hypothetical conserved gene.;Transcript_evidence=AK111989 (DDBJ%2C Best hit);ORF_evidence=Q33AH4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),EGF-like calcium-binding (IPR001881),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EGF-like calcium-binding%2C conserved site (IPR018097),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-032-C01;Oryzabase=8029;Expression=AK111989;TENOR=Os10t0180800-03;KEGG=Os10t0180800-03
Chr10	irgsp1_rep	CDS	5541807	5542275	.	-	0	Parent=Os10t0180800-03
Chr10	irgsp1_rep	CDS	5541184	5541336	.	-	2	Parent=Os10t0180800-03
Chr10	irgsp1_rep	CDS	5539842	5541100	.	-	2	Parent=Os10t0180800-03
Chr10	irgsp1_rep	three_prime_UTR	5539745	5539841	.	-	.	Parent=Os10t0180800-03
Chr10	irgsp1_rep	mRNA	5568825	5569924	.	-	.	ID=Os10t0181100-01;Name=Os10t0181100-01;Locus_id=Os10g0181100;Note=Conserved hypothetical protein.;Transcript_evidence=AK108427 (DDBJ%2C Best hit);ORF_evidence=B8BFZ2 (UniProt);NIAS_FLcDNA=002-143-A08;Expression=AK108427;TENOR=Os10t0181100-01;KEGG=Os10t0181100-01
Chr10	irgsp1_rep	five_prime_UTR	5569813	5569924	.	-	.	Parent=Os10t0181100-01
Chr10	irgsp1_rep	CDS	5569066	5569812	.	-	0	Parent=Os10t0181100-01
Chr10	irgsp1_rep	three_prime_UTR	5568825	5569065	.	-	.	Parent=Os10t0181100-01
Chr10	irgsp1_rep	mRNA	5577483	5586604	.	-	.	ID=Os10t0181200-01;Name=Os10t0181200-01;Locus_id=Os10g0181200;Note=Similar to binding protein.;Transcript_evidence=AK066480 (DDBJ%2C Best hit);ORF_evidence=XP_002867102.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013070G23;TENOR=Os10t0181200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	5586524	5586604	.	-	.	Parent=Os10t0181200-01
Chr10	irgsp1_rep	five_prime_UTR	5586214	5586270	.	-	.	Parent=Os10t0181200-01
Chr10	irgsp1_rep	five_prime_UTR	5585415	5585549	.	-	.	Parent=Os10t0181200-01
Chr10	irgsp1_rep	CDS	5584889	5585414	.	-	0	Parent=Os10t0181200-01
Chr10	irgsp1_rep	CDS	5584546	5584768	.	-	2	Parent=Os10t0181200-01
Chr10	irgsp1_rep	CDS	5584344	5584407	.	-	1	Parent=Os10t0181200-01
Chr10	irgsp1_rep	CDS	5584126	5584270	.	-	0	Parent=Os10t0181200-01
Chr10	irgsp1_rep	CDS	5583924	5584039	.	-	2	Parent=Os10t0181200-01
Chr10	irgsp1_rep	CDS	5583714	5583842	.	-	0	Parent=Os10t0181200-01
Chr10	irgsp1_rep	CDS	5583393	5583584	.	-	0	Parent=Os10t0181200-01
Chr10	irgsp1_rep	CDS	5583151	5583315	.	-	0	Parent=Os10t0181200-01
Chr10	irgsp1_rep	CDS	5582919	5583059	.	-	0	Parent=Os10t0181200-01
Chr10	irgsp1_rep	CDS	5582636	5582735	.	-	0	Parent=Os10t0181200-01
Chr10	irgsp1_rep	CDS	5582167	5582275	.	-	2	Parent=Os10t0181200-01
Chr10	irgsp1_rep	CDS	5581998	5582089	.	-	1	Parent=Os10t0181200-01
Chr10	irgsp1_rep	CDS	5581721	5581811	.	-	2	Parent=Os10t0181200-01
Chr10	irgsp1_rep	CDS	5580709	5580940	.	-	1	Parent=Os10t0181200-01
Chr10	irgsp1_rep	CDS	5580534	5580626	.	-	0	Parent=Os10t0181200-01
Chr10	irgsp1_rep	CDS	5579932	5579980	.	-	0	Parent=Os10t0181200-01
Chr10	irgsp1_rep	CDS	5578345	5578438	.	-	2	Parent=Os10t0181200-01
Chr10	irgsp1_rep	CDS	5577777	5578008	.	-	1	Parent=Os10t0181200-01
Chr10	irgsp1_rep	three_prime_UTR	5577483	5577776	.	-	.	Parent=Os10t0181200-01
Chr10	irgsp1_rep	mRNA	5577475	5582195	.	-	.	ID=Os10t0181200-02;Name=Os10t0181200-02;Locus_id=Os10g0181200;Note=Similar to (RAP Annotation release2) Protein prenyltransferase domain containing protein.;Transcript_evidence=AK070212 (DDBJ%2C Best hit);ORF_evidence=Q7XGA9 (UniProt);NIAS_FLcDNA=J023044F01;Expression=AK070212;TENOR=Os10t0181200-02;KEGG=Os10t0181200-02
Chr10	irgsp1_rep	CDS	5582167	5582195	.	-	0	Parent=Os10t0181200-02
Chr10	irgsp1_rep	CDS	5581998	5582089	.	-	1	Parent=Os10t0181200-02
Chr10	irgsp1_rep	CDS	5581721	5581811	.	-	2	Parent=Os10t0181200-02
Chr10	irgsp1_rep	CDS	5580709	5580940	.	-	1	Parent=Os10t0181200-02
Chr10	irgsp1_rep	CDS	5580522	5580626	.	-	0	Parent=Os10t0181200-02
Chr10	irgsp1_rep	three_prime_UTR	5578345	5580521	.	-	.	Parent=Os10t0181200-02
Chr10	irgsp1_rep	three_prime_UTR	5577475	5578008	.	-	.	Parent=Os10t0181200-02
Chr10	irgsp1_rep	mRNA	5577718	5586583	.	+	.	ID=Os10t0181333-00;Name=Os10t0181333-00;Locus_id=Os10g0181333;Note=Hypothetical protein.;Transcript_evidence=tplb0048d21 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0181333-00
Chr10	irgsp1_rep	five_prime_UTR	5577718	5578008	.	+	.	Parent=Os10t0181333-00
Chr10	irgsp1_rep	five_prime_UTR	5578345	5578479	.	+	.	Parent=Os10t0181333-00
Chr10	irgsp1_rep	five_prime_UTR	5580526	5580628	.	+	.	Parent=Os10t0181333-00
Chr10	irgsp1_rep	five_prime_UTR	5580706	5580937	.	+	.	Parent=Os10t0181333-00
Chr10	irgsp1_rep	five_prime_UTR	5581716	5581799	.	+	.	Parent=Os10t0181333-00
Chr10	irgsp1_rep	five_prime_UTR	5581987	5582091	.	+	.	Parent=Os10t0181333-00
Chr10	irgsp1_rep	five_prime_UTR	5582160	5582273	.	+	.	Parent=Os10t0181333-00
Chr10	irgsp1_rep	five_prime_UTR	5582634	5582726	.	+	.	Parent=Os10t0181333-00
Chr10	irgsp1_rep	five_prime_UTR	5582912	5583064	.	+	.	Parent=Os10t0181333-00
Chr10	irgsp1_rep	five_prime_UTR	5583159	5583314	.	+	.	Parent=Os10t0181333-00
Chr10	irgsp1_rep	five_prime_UTR	5583392	5583607	.	+	.	Parent=Os10t0181333-00
Chr10	irgsp1_rep	five_prime_UTR	5583737	5583853	.	+	.	Parent=Os10t0181333-00
Chr10	irgsp1_rep	five_prime_UTR	5583935	5584041	.	+	.	Parent=Os10t0181333-00
Chr10	irgsp1_rep	five_prime_UTR	5584128	5584264	.	+	.	Parent=Os10t0181333-00
Chr10	irgsp1_rep	five_prime_UTR	5584336	5584405	.	+	.	Parent=Os10t0181333-00
Chr10	irgsp1_rep	five_prime_UTR	5584544	5584767	.	+	.	Parent=Os10t0181333-00
Chr10	irgsp1_rep	five_prime_UTR	5584888	5585428	.	+	.	Parent=Os10t0181333-00
Chr10	irgsp1_rep	CDS	5585429	5585536	.	+	0	Parent=Os10t0181333-00
Chr10	irgsp1_rep	CDS	5586203	5586583	.	+	0	Parent=Os10t0181333-00
Chr10	irgsp1_rep	mRNA	5592943	5595468	.	+	.	ID=Os10t0181600-01;Name=Os10t0181600-01;Locus_id=Os10g0181600;Note=Methyltransferase type 11 domain containing protein.;Transcript_evidence=AK119218 (DDBJ%2C Best hit);ORF_evidence=NP_001150888.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Methyltransferase type 11 (IPR013216);NIAS_FLcDNA=001-046-F08;Expression=AK119218;TENOR=Os10t0181600-01;KEGG=Os10t0181600-01
Chr10	irgsp1_rep	five_prime_UTR	5592943	5593007	.	+	.	Parent=Os10t0181600-01
Chr10	irgsp1_rep	CDS	5593008	5593270	.	+	0	Parent=Os10t0181600-01
Chr10	irgsp1_rep	CDS	5593366	5593478	.	+	1	Parent=Os10t0181600-01
Chr10	irgsp1_rep	CDS	5593737	5593786	.	+	2	Parent=Os10t0181600-01
Chr10	irgsp1_rep	CDS	5593934	5594167	.	+	0	Parent=Os10t0181600-01
Chr10	irgsp1_rep	CDS	5594699	5594848	.	+	0	Parent=Os10t0181600-01
Chr10	irgsp1_rep	CDS	5594931	5595026	.	+	0	Parent=Os10t0181600-01
Chr10	irgsp1_rep	CDS	5595121	5595141	.	+	0	Parent=Os10t0181600-01
Chr10	irgsp1_rep	CDS	5595225	5595392	.	+	0	Parent=Os10t0181600-01
Chr10	irgsp1_rep	three_prime_UTR	5595393	5595468	.	+	.	Parent=Os10t0181600-01
Chr10	irgsp1_rep	mRNA	5593017	5595558	.	+	.	ID=Os10t0181600-02;Name=Os10t0181600-02;Locus_id=Os10g0181600;Note=Similar to CMV 1a interacting protein 1.;Transcript_evidence=AK059127 (DDBJ%2C Best hit);ORF_evidence=NP_001150888.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Methyltransferase type 11 (IPR013216);NIAS_FLcDNA=001-022-G01;TENOR=Os10t0181600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	5593017	5593088	.	+	.	Parent=Os10t0181600-02
Chr10	irgsp1_rep	CDS	5593089	5593270	.	+	0	Parent=Os10t0181600-02
Chr10	irgsp1_rep	CDS	5593366	5593478	.	+	1	Parent=Os10t0181600-02
Chr10	irgsp1_rep	CDS	5593737	5593786	.	+	2	Parent=Os10t0181600-02
Chr10	irgsp1_rep	CDS	5593934	5594167	.	+	0	Parent=Os10t0181600-02
Chr10	irgsp1_rep	CDS	5594699	5594848	.	+	0	Parent=Os10t0181600-02
Chr10	irgsp1_rep	CDS	5594931	5595026	.	+	0	Parent=Os10t0181600-02
Chr10	irgsp1_rep	CDS	5595121	5595141	.	+	0	Parent=Os10t0181600-02
Chr10	irgsp1_rep	CDS	5595225	5595392	.	+	0	Parent=Os10t0181600-02
Chr10	irgsp1_rep	three_prime_UTR	5595393	5595558	.	+	.	Parent=Os10t0181600-02
Chr10	irgsp1_rep	mRNA	5595755	5610443	.	-	.	ID=Os10t0181700-01;Name=Os10t0181700-01;Locus_id=Os10g0181700;CGSNL Gene Symbol=MORC1;CGSNL Gene Name=MICRORCHIDIA PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsMORC1;Oryzabase Gene Name Synonym(s)=Microrchidia protein 1;Note=ATP-binding region%2C ATPase-like domain containing protein.;Transcript_evidence=AK068615 (DDBJ%2C Best hit);ORF_evidence=NP_568000.1 (RefSeq);GO=Molecular Function: ATP binding (GO:0005524);InterPro=ATPase-like%2C ATP-binding domain (IPR003594);NIAS_FLcDNA=J013157F21;Oryzabase=22638;Expression=AK068615;TENOR=Os10t0181700-01;KEGG=Os10t0181700-01
Chr10	irgsp1_rep	five_prime_UTR	5610345	5610443	.	-	.	Parent=Os10t0181700-01
Chr10	irgsp1_rep	CDS	5610218	5610344	.	-	0	Parent=Os10t0181700-01
Chr10	irgsp1_rep	CDS	5610027	5610116	.	-	2	Parent=Os10t0181700-01
Chr10	irgsp1_rep	CDS	5608702	5608736	.	-	2	Parent=Os10t0181700-01
Chr10	irgsp1_rep	CDS	5608486	5608564	.	-	0	Parent=Os10t0181700-01
Chr10	irgsp1_rep	CDS	5608286	5608375	.	-	2	Parent=Os10t0181700-01
Chr10	irgsp1_rep	CDS	5607386	5607461	.	-	2	Parent=Os10t0181700-01
Chr10	irgsp1_rep	CDS	5607204	5607282	.	-	1	Parent=Os10t0181700-01
Chr10	irgsp1_rep	CDS	5606996	5607124	.	-	0	Parent=Os10t0181700-01
Chr10	irgsp1_rep	CDS	5605487	5605586	.	-	0	Parent=Os10t0181700-01
Chr10	irgsp1_rep	CDS	5604528	5604631	.	-	2	Parent=Os10t0181700-01
Chr10	irgsp1_rep	CDS	5604302	5604451	.	-	0	Parent=Os10t0181700-01
Chr10	irgsp1_rep	CDS	5603898	5603990	.	-	0	Parent=Os10t0181700-01
Chr10	irgsp1_rep	CDS	5602576	5602627	.	-	0	Parent=Os10t0181700-01
Chr10	irgsp1_rep	CDS	5602382	5602493	.	-	2	Parent=Os10t0181700-01
Chr10	irgsp1_rep	CDS	5601844	5602052	.	-	1	Parent=Os10t0181700-01
Chr10	irgsp1_rep	CDS	5599394	5599458	.	-	2	Parent=Os10t0181700-01
Chr10	irgsp1_rep	CDS	5598398	5598483	.	-	0	Parent=Os10t0181700-01
Chr10	irgsp1_rep	CDS	5597867	5597909	.	-	1	Parent=Os10t0181700-01
Chr10	irgsp1_rep	CDS	5597674	5597784	.	-	0	Parent=Os10t0181700-01
Chr10	irgsp1_rep	three_prime_UTR	5597672	5597673	.	-	.	Parent=Os10t0181700-01
Chr10	irgsp1_rep	three_prime_UTR	5595755	5596155	.	-	.	Parent=Os10t0181700-01
Chr10	irgsp1_rep	mRNA	5595903	5599162	.	-	.	ID=Os10t0181700-02;Name=Os10t0181700-02;Locus_id=Os10g0181700;CGSNL Gene Symbol=MORC1;CGSNL Gene Name=MICRORCHIDIA PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsMORC1;Oryzabase Gene Name Synonym(s)=Microrchidia protein 1;Note=Hypothetical conserved gene.;Transcript_evidence=AK058820 (DDBJ%2C Best hit);ORF_evidence=Q94GH1 (UniProt);NIAS_FLcDNA=001-003-G08;Oryzabase=22638;Expression=AK058820;TENOR=Os10t0181700-02;KEGG=Os10t0181700-02
Chr10	irgsp1_rep	five_prime_UTR	5598502	5599162	.	-	.	Parent=Os10t0181700-02
Chr10	irgsp1_rep	CDS	5598398	5598501	.	-	0	Parent=Os10t0181700-02
Chr10	irgsp1_rep	CDS	5597867	5597909	.	-	1	Parent=Os10t0181700-02
Chr10	irgsp1_rep	CDS	5597674	5597784	.	-	0	Parent=Os10t0181700-02
Chr10	irgsp1_rep	three_prime_UTR	5597672	5597673	.	-	.	Parent=Os10t0181700-02
Chr10	irgsp1_rep	three_prime_UTR	5595903	5596155	.	-	.	Parent=Os10t0181700-02
Chr10	irgsp1_rep	mRNA	5597650	5610362	.	+	.	ID=Os10t0181800-00;Name=Os10t0181800-00;Locus_id=Os10g0181800;Note=Hypothetical protein.;Transcript_evidence=tplb0024l09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0181800-00
Chr10	irgsp1_rep	five_prime_UTR	5597650	5597782	.	+	.	Parent=Os10t0181800-00
Chr10	irgsp1_rep	five_prime_UTR	5597865	5597916	.	+	.	Parent=Os10t0181800-00
Chr10	irgsp1_rep	five_prime_UTR	5598409	5598526	.	+	.	Parent=Os10t0181800-00
Chr10	irgsp1_rep	five_prime_UTR	5601832	5602051	.	+	.	Parent=Os10t0181800-00
Chr10	irgsp1_rep	five_prime_UTR	5602381	5602495	.	+	.	Parent=Os10t0181800-00
Chr10	irgsp1_rep	five_prime_UTR	5602578	5602629	.	+	.	Parent=Os10t0181800-00
Chr10	irgsp1_rep	five_prime_UTR	5603891	5603987	.	+	.	Parent=Os10t0181800-00
Chr10	irgsp1_rep	five_prime_UTR	5604299	5604443	.	+	.	Parent=Os10t0181800-00
Chr10	irgsp1_rep	five_prime_UTR	5604515	5604629	.	+	.	Parent=Os10t0181800-00
Chr10	irgsp1_rep	five_prime_UTR	5605482	5605586	.	+	.	Parent=Os10t0181800-00
Chr10	irgsp1_rep	five_prime_UTR	5606996	5607124	.	+	.	Parent=Os10t0181800-00
Chr10	irgsp1_rep	five_prime_UTR	5607204	5607281	.	+	.	Parent=Os10t0181800-00
Chr10	irgsp1_rep	five_prime_UTR	5607385	5607461	.	+	.	Parent=Os10t0181800-00
Chr10	irgsp1_rep	five_prime_UTR	5608286	5608375	.	+	.	Parent=Os10t0181800-00
Chr10	irgsp1_rep	five_prime_UTR	5608486	5608591	.	+	.	Parent=Os10t0181800-00
Chr10	irgsp1_rep	CDS	5608592	5608598	.	+	0	Parent=Os10t0181800-00
Chr10	irgsp1_rep	CDS	5610025	5610116	.	+	2	Parent=Os10t0181800-00
Chr10	irgsp1_rep	CDS	5610218	5610362	.	+	0	Parent=Os10t0181800-00
Chr10	irgsp1_rep	mRNA	5624721	5629308	.	+	.	ID=Os10t0181900-01;Name=Os10t0181900-01;Locus_id=Os10g0181900;Note=Similar to OSIGBa0153E02-OSIGBa0093I20.19 protein.;Transcript_evidence=AK288250 (DDBJ%2C Best hit);ORF_evidence=Q01HQ6 (UniProt);NIAS_FLcDNA=J090015A01;TENOR=Os10t0181900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	5624721	5625325	.	+	.	Parent=Os10t0181900-01
Chr10	irgsp1_rep	CDS	5625326	5625457	.	+	0	Parent=Os10t0181900-01
Chr10	irgsp1_rep	three_prime_UTR	5625458	5629308	.	+	.	Parent=Os10t0181900-01
Chr10	irgsp1_rep	mRNA	5632466	5643047	.	+	.	ID=Os10t0182000-01;Name=Os10t0182000-01;Locus_id=Os10g0182000;Note=Similar to Alanyl-tRNA synthetase%2C mitochondrial precursor (EC 6.1.1.7) (Alanine--tRNA ligase) (AlaRS).;Transcript_evidence=AK066368 (DDBJ%2C Best hit);ORF_evidence=NP_175439.2 (RefSeq);GO=Biological Process: alanyl-tRNA aminoacylation (GO:0006419),Biological Process: tRNA aminoacylation (GO:0043039),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: alanine-tRNA ligase activity (GO:0004813),Molecular Function: ATP binding (GO:0005524),Molecular Function: ligase activity%2C forming aminoacyl-tRNA and related compounds (GO:0016876);InterPro=Alanyl-tRNA synthetase%2C class IIc (IPR002318),Phosphoesterase%2C DHHA1 (IPR003156),Threonyl/alanyl tRNA synthetase%2C SAD (IPR012947),Alanyl-tRNA synthetase%2C class IIc%2C anti-codon-binding domain (IPR018162),Threonyl/alanyl tRNA synthetase%2C class II-like%2C putative editing domain (IPR018163),Alanyl-tRNA synthetase%2C class IIc%2C N-terminal (IPR018164),Alanyl-tRNA synthetase%2C class IIc%2C core domain (IPR018165);NIAS_FLcDNA=J013059M16;Expression=AK066368;TENOR=Os10t0182000-01;KEGG=Os10t0182000-01 (EC:6.1.1.7)
Chr10	irgsp1_rep	five_prime_UTR	5632466	5632472	.	+	.	Parent=Os10t0182000-01
Chr10	irgsp1_rep	CDS	5632473	5632988	.	+	0	Parent=Os10t0182000-01
Chr10	irgsp1_rep	CDS	5633923	5634063	.	+	0	Parent=Os10t0182000-01
Chr10	irgsp1_rep	CDS	5634233	5634379	.	+	0	Parent=Os10t0182000-01
Chr10	irgsp1_rep	CDS	5634531	5634683	.	+	0	Parent=Os10t0182000-01
Chr10	irgsp1_rep	CDS	5634814	5634949	.	+	0	Parent=Os10t0182000-01
Chr10	irgsp1_rep	CDS	5636685	5636781	.	+	2	Parent=Os10t0182000-01
Chr10	irgsp1_rep	CDS	5637177	5637297	.	+	1	Parent=Os10t0182000-01
Chr10	irgsp1_rep	CDS	5637763	5637828	.	+	0	Parent=Os10t0182000-01
Chr10	irgsp1_rep	CDS	5638170	5638223	.	+	0	Parent=Os10t0182000-01
Chr10	irgsp1_rep	CDS	5638309	5638404	.	+	0	Parent=Os10t0182000-01
Chr10	irgsp1_rep	CDS	5639014	5639112	.	+	0	Parent=Os10t0182000-01
Chr10	irgsp1_rep	CDS	5639294	5639416	.	+	0	Parent=Os10t0182000-01
Chr10	irgsp1_rep	CDS	5639971	5640114	.	+	0	Parent=Os10t0182000-01
Chr10	irgsp1_rep	CDS	5640207	5640278	.	+	0	Parent=Os10t0182000-01
Chr10	irgsp1_rep	CDS	5640358	5640433	.	+	0	Parent=Os10t0182000-01
Chr10	irgsp1_rep	CDS	5640513	5640655	.	+	2	Parent=Os10t0182000-01
Chr10	irgsp1_rep	CDS	5640758	5640866	.	+	0	Parent=Os10t0182000-01
Chr10	irgsp1_rep	CDS	5640934	5641121	.	+	2	Parent=Os10t0182000-01
Chr10	irgsp1_rep	CDS	5641350	5641439	.	+	0	Parent=Os10t0182000-01
Chr10	irgsp1_rep	CDS	5641561	5641743	.	+	0	Parent=Os10t0182000-01
Chr10	irgsp1_rep	CDS	5642492	5642665	.	+	0	Parent=Os10t0182000-01
Chr10	irgsp1_rep	CDS	5642771	5642842	.	+	0	Parent=Os10t0182000-01
Chr10	irgsp1_rep	three_prime_UTR	5642843	5643047	.	+	.	Parent=Os10t0182000-01
Chr10	irgsp1_rep	mRNA	5662961	5663918	.	-	.	ID=Os10t0182300-00;Name=Os10t0182300-00;Locus_id=Os10g0182300;Note=Similar to predicted protein.;Transcript_evidence=AF358774 (DDBJ%2C Secondary hit);ORF_evidence=NP_001045740.1 (RefSeq);Expression=AF358774;TENOR=Os10t0182300-00;KEGG=Os10t0182300-00
Chr10	irgsp1_rep	five_prime_UTR	5663574	5663918	.	-	.	Parent=Os10t0182300-00
Chr10	irgsp1_rep	five_prime_UTR	5663296	5663376	.	-	.	Parent=Os10t0182300-00
Chr10	irgsp1_rep	CDS	5663062	5663295	.	-	0	Parent=Os10t0182300-00
Chr10	irgsp1_rep	three_prime_UTR	5662961	5663061	.	-	.	Parent=Os10t0182300-00
Chr10	irgsp1_rep	mRNA	5693749	5697936	.	-	.	ID=Os10t0183000-01;Name=Os10t0183000-01;Locus_id=Os10g0183000;RAP-DB Gene Symbol Synonym(s)=OsLSR%2C LSR;RAP-DB Gene Name Synonym(s)=Low seed setting related;Oryzabase Gene Symbol Synonym(s)=OsLSR%2C LSR;Oryzabase Gene Name Synonym(s)=Low seed setting related;Note=NB-LRR protein%2C Immune response;Transcript_evidence=AK065484;ORF_evidence=Q7G6C5;GO=Molecular Function: ADP binding (GO:0043531);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),NB-ARC (IPR002182),Leucine-rich repeat domain%2C L domain-like (IPR032675);NIAS_FLcDNA=J013014C11;Manual Curation=April 22%2C 2016;Literature_PMID=27052628;Oryzabase=20997;Expression=AK065484;TENOR=Os10t0183000-01;KEGG=Os10t0183000-01
Chr10	irgsp1_rep	five_prime_UTR	5697769	5697936	.	-	.	Parent=Os10t0183000-01
Chr10	irgsp1_rep	five_prime_UTR	5697139	5697288	.	-	.	Parent=Os10t0183000-01
Chr10	irgsp1_rep	CDS	5694454	5697138	.	-	0	Parent=Os10t0183000-01
Chr10	irgsp1_rep	three_prime_UTR	5694450	5694453	.	-	.	Parent=Os10t0183000-01
Chr10	irgsp1_rep	three_prime_UTR	5693749	5694282	.	-	.	Parent=Os10t0183000-01
Chr10	irgsp1_rep	mRNA	5694345	5697886	.	-	.	ID=Os10t0183000-02;Name=Os10t0183000-02;Locus_id=Os10g0183000;Oryzabase Gene Symbol Synonym(s)=OsLSR%2C LSR;Oryzabase Gene Name Synonym(s)=Low seed setting related;Note=NB-ARC domain containing protein.;Transcript_evidence=AK101801 (DDBJ%2C Best hit);ORF_evidence=A2Z5J1 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J033066I18;Oryzabase=20997;Expression=AK101801;TENOR=Os10t0183000-02;KEGG=Os10t0183000-02
Chr10	irgsp1_rep	five_prime_UTR	5697769	5697886	.	-	.	Parent=Os10t0183000-02
Chr10	irgsp1_rep	five_prime_UTR	5697139	5697288	.	-	.	Parent=Os10t0183000-02
Chr10	irgsp1_rep	CDS	5694454	5697138	.	-	0	Parent=Os10t0183000-02
Chr10	irgsp1_rep	three_prime_UTR	5694345	5694453	.	-	.	Parent=Os10t0183000-02
Chr10	irgsp1_rep	mRNA	5694473	5696682	.	+	.	ID=Os10t0183150-00;Name=Os10t0183150-00;Locus_id=Os10g0183150;Note=Hypothetical protein.;Transcript_evidence=AK368907 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0183150-00
Chr10	irgsp1_rep	five_prime_UTR	5694473	5694601	.	+	.	Parent=Os10t0183150-00
Chr10	irgsp1_rep	CDS	5694602	5694883	.	+	0	Parent=Os10t0183150-00
Chr10	irgsp1_rep	three_prime_UTR	5694884	5694995	.	+	.	Parent=Os10t0183150-00
Chr10	irgsp1_rep	three_prime_UTR	5695080	5696682	.	+	.	Parent=Os10t0183150-00
Chr10	irgsp1_rep	mRNA	5714516	5716299	.	+	.	ID=Os10t0183500-01;Name=Os10t0183500-01;Locus_id=Os10g0183500;Note=Conserved hypothetical protein.;Transcript_evidence=AK066528 (DDBJ%2C Best hit);ORF_evidence=NP_001059019.1 (RefSeq);NIAS_FLcDNA=J013071I23;TENOR=Os10t0183500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	5714516	5714894	.	+	.	Parent=Os10t0183500-01
Chr10	irgsp1_rep	CDS	5714895	5715386	.	+	0	Parent=Os10t0183500-01
Chr10	irgsp1_rep	three_prime_UTR	5715387	5716299	.	+	.	Parent=Os10t0183500-01
Chr10	irgsp1_rep	mRNA	5714793	5715662	.	+	.	ID=Os10t0183500-02;Name=Os10t0183500-02;Locus_id=Os10g0183500;Note=Hypothetical protein.;Transcript_evidence=AK073498 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033045C23;TENOR=Os10t0183500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	5714793	5714794	.	+	.	Parent=Os10t0183500-02
Chr10	irgsp1_rep	CDS	5714795	5715223	.	+	0	Parent=Os10t0183500-02
Chr10	irgsp1_rep	three_prime_UTR	5715224	5715662	.	+	.	Parent=Os10t0183500-02
Chr10	irgsp1_rep	mRNA	5720797	5722187	.	-	.	ID=Os10t0183800-00;Name=Os10t0183800-00;Locus_id=Os10g0183800;Oryzabase Gene Symbol Synonym(s)=OsFbox542%2C Os_F0480%2C OsSTA237;Oryzabase Gene Name Synonym(s)=F-box protein 542;Note=Similar to F-box domain containing protein.;Transcript_evidence=BT034650 (DDBJ);ORF_evidence=Q7G6C2 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);Oryzabase=17311;TENOR=Os10t0183800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	5720841	5722187	.	-	0	Parent=Os10t0183800-00
Chr10	irgsp1_rep	three_prime_UTR	5720797	5720840	.	-	.	Parent=Os10t0183800-00
Chr10	irgsp1_rep	mRNA	5730937	5736326	.	+	.	ID=Os10t0183900-01;Name=Os10t0183900-01;Locus_id=Os10g0183900;Note=Ribosomal RNA adenine methylase transferase family protein.;Transcript_evidence=AK099711 (DDBJ%2C Best hit);ORF_evidence=B6TPK7 (UniProt);GO=Biological Process: rRNA modification (GO:0000154),Biological Process: rRNA processing (GO:0006364),Molecular Function: rRNA (adenine-N6%2CN6-)-dimethyltransferase activity (GO:0000179),Molecular Function: rRNA methyltransferase activity (GO:0008649),Molecular Function: rRNA (adenine) methyltransferase activity (GO:0016433);InterPro=Ribosomal RNA adenine methylase transferase (IPR001737),Ribosomal RNA adenine dimethylase (IPR011530),Ribosomal RNA adenine methylase transferase%2C conserved site (IPR020596),Ribosomal RNA adenine methylase transferase%2C N-terminal (IPR020598);NIAS_FLcDNA=J013081J12;Expression=AK099711;TENOR=Os10t0183900-01;KEGG=Os10t0183900-01 (EC:2.1.1.182)
Chr10	irgsp1_rep	five_prime_UTR	5730937	5731083	.	+	.	Parent=Os10t0183900-01
Chr10	irgsp1_rep	CDS	5731084	5731422	.	+	0	Parent=Os10t0183900-01
Chr10	irgsp1_rep	CDS	5735426	5736181	.	+	0	Parent=Os10t0183900-01
Chr10	irgsp1_rep	three_prime_UTR	5736182	5736326	.	+	.	Parent=Os10t0183900-01
Chr10	irgsp1_rep	mRNA	5730995	5736326	.	+	.	ID=Os10t0183900-02;Name=Os10t0183900-02;Locus_id=Os10g0183900;Note=Ribosomal RNA adenine methylase transferase family protein.;Transcript_evidence=AK072957 (DDBJ%2C Best hit);ORF_evidence=B6TPK7 (UniProt);GO=Biological Process: rRNA modification (GO:0000154),Biological Process: rRNA processing (GO:0006364),Molecular Function: rRNA (adenine-N6%2CN6-)-dimethyltransferase activity (GO:0000179),Molecular Function: rRNA methyltransferase activity (GO:0008649),Molecular Function: rRNA (adenine) methyltransferase activity (GO:0016433);InterPro=Ribosomal RNA adenine methylase transferase (IPR001737),Ribosomal RNA adenine dimethylase (IPR011530),Ribosomal RNA adenine methylase transferase%2C conserved site (IPR020596),Ribosomal RNA adenine methylase transferase%2C N-terminal (IPR020598);NIAS_FLcDNA=J023149E21;Expression=AK072957;TENOR=Os10t0183900-02;KEGG=Os10t0183900-02 (EC:2.1.1.182)
Chr10	irgsp1_rep	five_prime_UTR	5730995	5731083	.	+	.	Parent=Os10t0183900-02
Chr10	irgsp1_rep	CDS	5731084	5731422	.	+	0	Parent=Os10t0183900-02
Chr10	irgsp1_rep	CDS	5735426	5736181	.	+	0	Parent=Os10t0183900-02
Chr10	irgsp1_rep	three_prime_UTR	5736182	5736326	.	+	.	Parent=Os10t0183900-02
Chr10	irgsp1_rep	mRNA	5759697	5762789	.	+	.	ID=Os10t0184200-00;Name=Os10t0184200-00;Locus_id=Os10g0184200;Note=Protein of unknown function DUF594 family protein.;Transcript_evidence=CT835765 (DDBJ%2C Best hit);ORF_evidence=NP_001064258.2 (RefSeq);InterPro=Protein of unknown function DUF594 (IPR007658);TENOR=Os10t0184200-00;KEGG=Os10t0184200-00
Chr10	irgsp1_rep	five_prime_UTR	5759697	5759847	.	+	.	Parent=Os10t0184200-00
Chr10	irgsp1_rep	CDS	5759848	5759855	.	+	0	Parent=Os10t0184200-00
Chr10	irgsp1_rep	CDS	5760635	5762642	.	+	1	Parent=Os10t0184200-00
Chr10	irgsp1_rep	three_prime_UTR	5762643	5762789	.	+	.	Parent=Os10t0184200-00
Chr10	irgsp1_rep	mRNA	5780661	5781054	.	-	.	ID=Os10t0184250-00;Name=Os10t0184250-00;Locus_id=Os10g0184250;Note=Hypothetical gene.;Transcript_evidence=AK330289 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0184250-00;KEGG=Os10t0184250-00
Chr10	irgsp1_rep	five_prime_UTR	5781054	5781054	.	-	.	Parent=Os10t0184250-00
Chr10	irgsp1_rep	CDS	5780703	5781053	.	-	0	Parent=Os10t0184250-00
Chr10	irgsp1_rep	three_prime_UTR	5780661	5780702	.	-	.	Parent=Os10t0184250-00
Chr10	irgsp1_rep	mRNA	5788473	5789339	.	+	.	ID=Os10t0184300-01;Name=Os10t0184300-01;Locus_id=Os10g0184300;Note=ATPase%2C V0/A0 complex%2C 116-kDa subunit family protein.;Transcript_evidence=AK058856 (DDBJ%2C Best hit);ORF_evidence=Q33AF5 (UniProt);GO=Biological Process: ATP hydrolysis coupled proton transport (GO:0015991),Cellular Component: proton-transporting two-sector ATPase complex%2C proton-transporting domain (GO:0033177),Molecular Function: hydrogen ion transmembrane transporter activity (GO:0015078);InterPro=ATPase%2C V0/A0 complex%2C 116kDa subunit (IPR002490);NIAS_FLcDNA=001-005-B12;Expression=AK058856;TENOR=Os10t0184300-01;KEGG=Os10t0184300-01 (EC:3.6.3.14)
Chr10	irgsp1_rep	five_prime_UTR	5788473	5788474	.	+	.	Parent=Os10t0184300-01
Chr10	irgsp1_rep	CDS	5788475	5788527	.	+	0	Parent=Os10t0184300-01
Chr10	irgsp1_rep	CDS	5788619	5788678	.	+	1	Parent=Os10t0184300-01
Chr10	irgsp1_rep	CDS	5788766	5788970	.	+	1	Parent=Os10t0184300-01
Chr10	irgsp1_rep	three_prime_UTR	5788971	5789339	.	+	.	Parent=Os10t0184300-01
Chr10	irgsp1_rep	mRNA	5788975	5789278	.	+	.	ID=Os10t0184300-02;Name=Os10t0184300-02;Locus_id=Os10g0184300;Note=Non-protein coding transcript.;Transcript_evidence=AK060235 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-003-B12;TENOR=Os10t0184300-02
Chr10	irgsp1_rep	exon	5788975	5789278	.	+	.	Parent=Os10t0184300-02
Chr10	irgsp1_rep	mRNA	5799171	5799390	.	+	.	ID=Os10t0184432-00;Name=Os10t0184432-00;Locus_id=Os10g0184432;Note=Non-protein coding transcript.;Transcript_evidence=EU942571 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0184432-00
Chr10	irgsp1_rep	exon	5799171	5799390	.	+	.	Parent=Os10t0184432-00
Chr10	irgsp1_rep	mRNA	5826151	5827881	.	+	.	ID=Os10t0184871-00;Name=Os10t0184871-00;Locus_id=Os10g0184871;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=EU338457 (DDBJ);ORF_evidence=Q7XG97 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);TENOR=Os10t0184871-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	5826151	5826456	.	+	0	Parent=Os10t0184871-00
Chr10	irgsp1_rep	three_prime_UTR	5826457	5826515	.	+	.	Parent=Os10t0184871-00
Chr10	irgsp1_rep	three_prime_UTR	5827612	5827881	.	+	.	Parent=Os10t0184871-00
Chr10	irgsp1_rep	mRNA	5841201	5843444	.	+	.	ID=Os10t0185100-01;Name=Os10t0185100-01;Locus_id=Os10g0185100;Note=Conserved hypothetical protein.;Transcript_evidence=AK065091 (DDBJ%2C Best hit);ORF_evidence=Q7G4N8 (UniProt);NIAS_FLcDNA=J013001L23;Expression=AK065091;TENOR=Os10t0185100-01;KEGG=Os10t0185100-01
Chr10	irgsp1_rep	five_prime_UTR	5841201	5841446	.	+	.	Parent=Os10t0185100-01
Chr10	irgsp1_rep	five_prime_UTR	5842107	5842121	.	+	.	Parent=Os10t0185100-01
Chr10	irgsp1_rep	five_prime_UTR	5842231	5842313	.	+	.	Parent=Os10t0185100-01
Chr10	irgsp1_rep	five_prime_UTR	5842944	5842971	.	+	.	Parent=Os10t0185100-01
Chr10	irgsp1_rep	CDS	5842972	5843118	.	+	0	Parent=Os10t0185100-01
Chr10	irgsp1_rep	three_prime_UTR	5843119	5843444	.	+	.	Parent=Os10t0185100-01
Chr10	irgsp1_rep	mRNA	5841585	5841893	.	+	.	ID=Os10t0185200-00;Name=Os10t0185200-00;Locus_id=Os10g0185200;Note=Similar to ADL6 (DYNAMIN-LIKE PROTEIN 6).;Transcript_evidence=ab initio prediction;ORF_evidence=NP_172500.1 (RefSeq);TENOR=Os10t0185200-00;KEGG=Os10t0185200-00
Chr10	irgsp1_rep	CDS	5841585	5841893	.	+	0	Parent=Os10t0185200-00
Chr10	irgsp1_rep	mRNA	5866542	5867333	.	-	.	ID=Os10t0185400-00;Name=Os10t0185400-00;Locus_id=Os10g0185400;Note=Pectinesterase inhibitor domain containing protein.;Transcript_evidence=CT835815 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);TENOR=Os10t0185400-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	5866650	5867333	.	-	0	Parent=Os10t0185400-00
Chr10	irgsp1_rep	three_prime_UTR	5866542	5866649	.	-	.	Parent=Os10t0185400-00
Chr10	irgsp1_rep	mRNA	5907417	5908148	.	+	.	ID=Os10t0186200-00;Name=Os10t0186200-00;Locus_id=Os10g0186200;Note=Pectinesterase inhibitor domain containing protein.;Transcript_evidence=EU971858 (DDBJ);ORF_evidence=NP_001176048.1 (RefSeq);GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);TENOR=Os10t0186200-00
Chr10	irgsp1_rep	CDS	5907417	5908148	.	+	0	Parent=Os10t0186200-00
Chr10	irgsp1_rep	mRNA	5939040	5939536	.	-	.	ID=Os10t0186600-00;Name=Os10t0186600-00;Locus_id=Os10g0186600;Note=Non-protein coding transcript.;Transcript_evidence=FP100159 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0186600-00
Chr10	irgsp1_rep	exon	5939442	5939536	.	-	.	Parent=Os10t0186600-00
Chr10	irgsp1_rep	exon	5939040	5939352	.	-	.	Parent=Os10t0186600-00
Chr10	irgsp1_rep	mRNA	5948834	5949528	.	+	.	ID=Os10t0186900-01;Name=Os10t0186900-01;Locus_id=Os10g0186900;Note=Conserved hypothetical protein.;Transcript_evidence=AK069635 (DDBJ%2C Best hit);ORF_evidence=Q6K3T8 (UniProt);NIAS_FLcDNA=J023028N13;Expression=AK069635;TENOR=Os10t0186900-01;KEGG=Os10t0186900-01
Chr10	irgsp1_rep	five_prime_UTR	5948834	5949053	.	+	.	Parent=Os10t0186900-01
Chr10	irgsp1_rep	CDS	5949054	5949440	.	+	0	Parent=Os10t0186900-01
Chr10	irgsp1_rep	three_prime_UTR	5949441	5949528	.	+	.	Parent=Os10t0186900-01
Chr10	irgsp1_rep	mRNA	5975771	5978330	.	-	.	ID=Os10t0187366-01;Name=Os10t0187366-01;Locus_id=Os10g0187366;Note=Conserved hypothetical protein.;Transcript_evidence=AK242661 (DDBJ%2C Best hit);ORF_evidence=NP_001176049.1 (RefSeq);NIAS_FLcDNA=J090028J18;TENOR=Os10t0187366-01;KEGG=Os10t0187366-01
Chr10	irgsp1_rep	five_prime_UTR	5976458	5978330	.	-	.	Parent=Os10t0187366-01
Chr10	irgsp1_rep	CDS	5976074	5976457	.	-	0	Parent=Os10t0187366-01
Chr10	irgsp1_rep	three_prime_UTR	5975771	5976073	.	-	.	Parent=Os10t0187366-01
Chr10	irgsp1_rep	mRNA	6017016	6017136	.	-	.	ID=Os10t0187410-00;Name=Os10t0187410-00;Locus_id=Os10g0187410;Note=Non-protein coding transcript.;Transcript_evidence=EU944270 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0187410-00
Chr10	irgsp1_rep	exon	6017016	6017136	.	-	.	Parent=Os10t0187410-00
Chr10	irgsp1_rep	mRNA	6017480	6017794	.	-	.	ID=Os10t0187454-00;Name=Os10t0187454-00;Locus_id=Os10g0187454;Note=Non-protein coding transcript.;Transcript_evidence=EU951884 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0187454-00
Chr10	irgsp1_rep	exon	6017480	6017794	.	-	.	Parent=Os10t0187454-00
Chr10	irgsp1_rep	mRNA	6018131	6019166	.	+	.	ID=Os10t0187500-01;Name=Os10t0187500-01;Locus_id=Os10g0187500;CGSNL Gene Symbol=RLCK294;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 294;Oryzabase Gene Symbol Synonym(s)=OsRLCK294;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 294;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=AK061320 (DDBJ%2C Best hit);ORF_evidence=Q10P10 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=006-302-E11;Oryzabase=18970;TENOR=Os10t0187500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	6018131	6018131	.	+	.	Parent=Os10t0187500-01
Chr10	irgsp1_rep	CDS	6018132	6019004	.	+	0	Parent=Os10t0187500-01
Chr10	irgsp1_rep	three_prime_UTR	6019005	6019166	.	+	.	Parent=Os10t0187500-01
Chr10	irgsp1_rep	mRNA	6018254	6019184	.	+	.	ID=Os10t0187500-02;Name=Os10t0187500-02;Locus_id=Os10g0187500;CGSNL Gene Symbol=RLCK294;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 294;Oryzabase Gene Symbol Synonym(s)=OsRLCK294;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 294;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=AK065691 (DDBJ%2C Best hit);ORF_evidence=Q10P10 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013042A17;Oryzabase=18970;Expression=AK065691;TENOR=Os10t0187500-02;KEGG=Os10t0187500-02
Chr10	irgsp1_rep	five_prime_UTR	6018254	6018254	.	+	.	Parent=Os10t0187500-02
Chr10	irgsp1_rep	CDS	6018255	6019004	.	+	0	Parent=Os10t0187500-02
Chr10	irgsp1_rep	three_prime_UTR	6019005	6019184	.	+	.	Parent=Os10t0187500-02
Chr10	irgsp1_rep	mRNA	6024884	6028718	.	+	.	ID=Os10t0187701-00;Name=Os10t0187701-00;Locus_id=Os10g0187701;Note=Myb/SANT-like domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7G4S4 (UniProt);InterPro=Myb/SANT-like domain (IPR024752);TENOR=Os10t0187701-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	6024884	6025195	.	+	0	Parent=Os10t0187701-00
Chr10	irgsp1_rep	CDS	6026210	6026715	.	+	0	Parent=Os10t0187701-00
Chr10	irgsp1_rep	CDS	6027166	6027442	.	+	1	Parent=Os10t0187701-00
Chr10	irgsp1_rep	CDS	6028587	6028718	.	+	0	Parent=Os10t0187701-00
Chr10	irgsp1_rep	mRNA	6068847	6070114	.	+	.	ID=Os10t0188000-01;Name=Os10t0188000-01;Locus_id=Os10g0188000;Oryzabase Gene Symbol Synonym(s)=OsFbox543%2C Os_F0162;Oryzabase Gene Name Synonym(s)=F-box protein 543;Note=Similar to F-box domain containing protein%2C expressed.;Transcript_evidence=AK108031 (DDBJ%2C Best hit);ORF_evidence=Q8LMN7 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-137-B05;Oryzabase=17312;Expression=AK108031;TENOR=Os10t0188000-01;KEGG=Os10t0188000-01
Chr10	irgsp1_rep	CDS	6068847	6069602	.	+	0	Parent=Os10t0188000-01
Chr10	irgsp1_rep	three_prime_UTR	6069603	6070114	.	+	.	Parent=Os10t0188000-01
Chr10	irgsp1_rep	mRNA	6079970	6087844	.	-	.	ID=Os10t0188100-01;Name=Os10t0188100-01;Locus_id=Os10g0188100;Note=Conserved hypothetical protein.;Transcript_evidence=AK100664 (DDBJ%2C Best hit);ORF_evidence=F2ECX9 (UniProt);NIAS_FLcDNA=J023112E10;TENOR=Os10t0188100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	6087479	6087844	.	-	.	Parent=Os10t0188100-01
Chr10	irgsp1_rep	five_prime_UTR	6086263	6086421	.	-	.	Parent=Os10t0188100-01
Chr10	irgsp1_rep	five_prime_UTR	6085204	6085355	.	-	.	Parent=Os10t0188100-01
Chr10	irgsp1_rep	five_prime_UTR	6084236	6084603	.	-	.	Parent=Os10t0188100-01
Chr10	irgsp1_rep	five_prime_UTR	6083432	6083547	.	-	.	Parent=Os10t0188100-01
Chr10	irgsp1_rep	five_prime_UTR	6082454	6082576	.	-	.	Parent=Os10t0188100-01
Chr10	irgsp1_rep	five_prime_UTR	6082265	6082331	.	-	.	Parent=Os10t0188100-01
Chr10	irgsp1_rep	CDS	6082128	6082264	.	-	0	Parent=Os10t0188100-01
Chr10	irgsp1_rep	CDS	6081843	6082040	.	-	1	Parent=Os10t0188100-01
Chr10	irgsp1_rep	CDS	6080552	6080579	.	-	1	Parent=Os10t0188100-01
Chr10	irgsp1_rep	three_prime_UTR	6079970	6080551	.	-	.	Parent=Os10t0188100-01
Chr10	irgsp1_rep	mRNA	6082456	6087843	.	-	.	ID=Os10t0188100-02;Name=Os10t0188100-02;Locus_id=Os10g0188100;Note=Similar to transcription initiation factor IIF%2C alpha subunit.;Transcript_evidence=AK071062 (DDBJ%2C Best hit);ORF_evidence=B6T7E5 (UniProt);GO=Biological Process: transcription initiation from RNA polymerase II promoter (GO:0006367),Biological Process: positive regulation of transcription%2C DNA-dependent (GO:0045893),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: catalytic activity (GO:0003824);InterPro=Transcription initiation factor IIF%2C alpha subunit (IPR008851),Transcription Factor IIF%2C Rap30/Rap74%2C interaction (IPR011039);NIAS_FLcDNA=J023081H01;TENOR=Os10t0188100-02
Chr10	irgsp1_rep	five_prime_UTR	6087653	6087843	.	-	.	Parent=Os10t0188100-02
Chr10	irgsp1_rep	CDS	6087479	6087652	.	-	0	Parent=Os10t0188100-02
Chr10	irgsp1_rep	CDS	6086263	6086421	.	-	0	Parent=Os10t0188100-02
Chr10	irgsp1_rep	CDS	6085204	6085355	.	-	0	Parent=Os10t0188100-02
Chr10	irgsp1_rep	CDS	6084236	6084603	.	-	1	Parent=Os10t0188100-02
Chr10	irgsp1_rep	CDS	6083432	6083547	.	-	2	Parent=Os10t0188100-02
Chr10	irgsp1_rep	CDS	6082456	6082576	.	-	0	Parent=Os10t0188100-02
Chr10	irgsp1_rep	mRNA	6080212	6087779	.	-	.	ID=Os10t0188100-03;Name=Os10t0188100-03;Locus_id=Os10g0188100;Note=Transcription initiation factor IIF%2C alpha subunit family protein.;Transcript_evidence=AK243052 (DDBJ%2C Best hit);ORF_evidence=B6T7E5 (UniProt);GO=Biological Process: transcription initiation from RNA polymerase II promoter (GO:0006367),Biological Process: positive regulation of transcription%2C DNA-dependent (GO:0045893),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: catalytic activity (GO:0003824);InterPro=Transcription initiation factor IIF%2C alpha subunit (IPR008851),Transcription Factor IIF%2C Rap30/Rap74%2C interaction (IPR011039),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=J100012M17;TENOR=Os10t0188100-03;KEGG=Os10t0188100-03
Chr10	irgsp1_rep	five_prime_UTR	6087653	6087779	.	-	.	Parent=Os10t0188100-03
Chr10	irgsp1_rep	CDS	6087479	6087652	.	-	0	Parent=Os10t0188100-03
Chr10	irgsp1_rep	CDS	6086263	6086421	.	-	0	Parent=Os10t0188100-03
Chr10	irgsp1_rep	CDS	6085204	6085355	.	-	0	Parent=Os10t0188100-03
Chr10	irgsp1_rep	CDS	6084236	6084603	.	-	1	Parent=Os10t0188100-03
Chr10	irgsp1_rep	CDS	6083432	6083547	.	-	2	Parent=Os10t0188100-03
Chr10	irgsp1_rep	CDS	6082454	6082576	.	-	0	Parent=Os10t0188100-03
Chr10	irgsp1_rep	CDS	6082128	6082331	.	-	0	Parent=Os10t0188100-03
Chr10	irgsp1_rep	CDS	6081843	6082040	.	-	0	Parent=Os10t0188100-03
Chr10	irgsp1_rep	CDS	6080484	6080579	.	-	0	Parent=Os10t0188100-03
Chr10	irgsp1_rep	three_prime_UTR	6080212	6080483	.	-	.	Parent=Os10t0188100-03
Chr10	irgsp1_rep	mRNA	6080199	6084461	.	-	.	ID=Os10t0188100-04;Name=Os10t0188100-04;Locus_id=Os10g0188100;Note=Conserved hypothetical protein.;Transcript_evidence=AK105070 (DDBJ%2C Best hit);ORF_evidence=F2ECX9 (UniProt);NIAS_FLcDNA=001-045-C07;TENOR=Os10t0188100-04;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	6084236	6084461	.	-	.	Parent=Os10t0188100-04
Chr10	irgsp1_rep	five_prime_UTR	6083432	6083547	.	-	.	Parent=Os10t0188100-04
Chr10	irgsp1_rep	five_prime_UTR	6082454	6082576	.	-	.	Parent=Os10t0188100-04
Chr10	irgsp1_rep	five_prime_UTR	6082265	6082328	.	-	.	Parent=Os10t0188100-04
Chr10	irgsp1_rep	CDS	6082119	6082264	.	-	0	Parent=Os10t0188100-04
Chr10	irgsp1_rep	CDS	6081843	6082040	.	-	1	Parent=Os10t0188100-04
Chr10	irgsp1_rep	CDS	6080552	6080579	.	-	1	Parent=Os10t0188100-04
Chr10	irgsp1_rep	three_prime_UTR	6080199	6080551	.	-	.	Parent=Os10t0188100-04
Chr10	irgsp1_rep	mRNA	6080433	6083483	.	+	.	ID=Os10t0188133-00;Name=Os10t0188133-00;Locus_id=Os10g0188133;Note=Non-protein coding transcript.;Transcript_evidence=BT016922 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0188133-00
Chr10	irgsp1_rep	exon	6080433	6080578	.	+	.	Parent=Os10t0188133-00
Chr10	irgsp1_rep	exon	6081842	6082035	.	+	.	Parent=Os10t0188133-00
Chr10	irgsp1_rep	exon	6082112	6082331	.	+	.	Parent=Os10t0188133-00
Chr10	irgsp1_rep	exon	6082454	6082591	.	+	.	Parent=Os10t0188133-00
Chr10	irgsp1_rep	exon	6083446	6083483	.	+	.	Parent=Os10t0188133-00
Chr10	irgsp1_rep	mRNA	6088525	6090873	.	+	.	ID=Os10t0188166-00;Name=Os10t0188166-00;Locus_id=Os10g0188166;Note=Hypothetical conserved gene.;Transcript_evidence=EU961484 (DDBJ);ORF_evidence=XP_002463563.1 (RefSeq);TENOR=Os10t0188166-00;KEGG=Os10t0188166-00
Chr10	irgsp1_rep	CDS	6088525	6088639	.	+	0	Parent=Os10t0188166-00
Chr10	irgsp1_rep	CDS	6089620	6089633	.	+	2	Parent=Os10t0188166-00
Chr10	irgsp1_rep	three_prime_UTR	6089634	6089798	.	+	.	Parent=Os10t0188166-00
Chr10	irgsp1_rep	three_prime_UTR	6090652	6090873	.	+	.	Parent=Os10t0188166-00
Chr10	irgsp1_rep	mRNA	6098677	6099111	.	-	.	ID=Os10t0188250-01;Name=Os10t0188250-01;Locus_id=Os10g0188250;Oryzabase Gene Symbol Synonym(s)=OsSTA238;Note=Hypothetical protein.;Transcript_evidence=AK242571 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090007M16;Oryzabase=19508;TENOR=Os10t0188250-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	6098898	6099111	.	-	.	Parent=Os10t0188250-01
Chr10	irgsp1_rep	CDS	6098677	6098897	.	-	0	Parent=Os10t0188250-01
Chr10	irgsp1_rep	mRNA	6103102	6109882	.	-	.	ID=Os10t0188275-00;Name=Os10t0188275-00;Locus_id=Os10g0188275;Note=Hypothetical protein.;Transcript_evidence=tplb0045g24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0188275-00
Chr10	irgsp1_rep	five_prime_UTR	6109677	6109882	.	-	.	Parent=Os10t0188275-00
Chr10	irgsp1_rep	five_prime_UTR	6109034	6109272	.	-	.	Parent=Os10t0188275-00
Chr10	irgsp1_rep	five_prime_UTR	6107282	6107514	.	-	.	Parent=Os10t0188275-00
Chr10	irgsp1_rep	five_prime_UTR	6105719	6106091	.	-	.	Parent=Os10t0188275-00
Chr10	irgsp1_rep	five_prime_UTR	6103803	6104549	.	-	.	Parent=Os10t0188275-00
Chr10	irgsp1_rep	CDS	6103461	6103802	.	-	0	Parent=Os10t0188275-00
Chr10	irgsp1_rep	three_prime_UTR	6103102	6103460	.	-	.	Parent=Os10t0188275-00
Chr10	irgsp1_rep	mRNA	6104501	6110244	.	+	.	ID=Os10t0188300-01;Name=Os10t0188300-01;Locus_id=Os10g0188300;CGSNL Gene Symbol=NTP10;CGSNL Gene Name=NUCLEOTIDYL TRANSFERASE PROTEIN 10;Oryzabase Gene Symbol Synonym(s)=OsNTP10;Oryzabase Gene Name Synonym(s)=DNA polymerase sigma%2C nucleotidyl transferase protein 10;Note=Similar to JHL05D22.13 protein.;Transcript_evidence=AK070718 (DDBJ%2C Best hit);ORF_evidence=E6NU32 (UniProt);GO=Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=PAP/25A-associated (IPR002058),Nucleotidyl transferase domain (IPR002934);NIAS_FLcDNA=J023057P21;Oryzabase=21290;TENOR=Os10t0188300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	6104501	6104548	.	+	0	Parent=Os10t0188300-01
Chr10	irgsp1_rep	CDS	6105718	6106086	.	+	0	Parent=Os10t0188300-01
Chr10	irgsp1_rep	CDS	6107274	6107497	.	+	0	Parent=Os10t0188300-01
Chr10	irgsp1_rep	CDS	6107584	6107641	.	+	1	Parent=Os10t0188300-01
Chr10	irgsp1_rep	CDS	6109078	6109274	.	+	0	Parent=Os10t0188300-01
Chr10	irgsp1_rep	CDS	6109679	6109901	.	+	1	Parent=Os10t0188300-01
Chr10	irgsp1_rep	three_prime_UTR	6109902	6110244	.	+	.	Parent=Os10t0188300-01
Chr10	irgsp1_rep	mRNA	6111498	6115269	.	+	.	ID=Os10t0188400-01;Name=Os10t0188400-01;Locus_id=Os10g0188400;Note=Similar to ACI13.;Transcript_evidence=AK122170 (DDBJ%2C Best hit);ORF_evidence=B6SN13 (UniProt);NIAS_FLcDNA=J033148D12;Expression=AK122170;TENOR=Os10t0188400-01;KEGG=Os10t0188400-01
Chr10	irgsp1_rep	five_prime_UTR	6111498	6111727	.	+	.	Parent=Os10t0188400-01
Chr10	irgsp1_rep	five_prime_UTR	6111877	6113147	.	+	.	Parent=Os10t0188400-01
Chr10	irgsp1_rep	CDS	6113148	6113295	.	+	0	Parent=Os10t0188400-01
Chr10	irgsp1_rep	CDS	6113395	6113498	.	+	2	Parent=Os10t0188400-01
Chr10	irgsp1_rep	three_prime_UTR	6113499	6114473	.	+	.	Parent=Os10t0188400-01
Chr10	irgsp1_rep	three_prime_UTR	6114591	6115269	.	+	.	Parent=Os10t0188400-01
Chr10	irgsp1_rep	mRNA	6144589	6150509	.	+	.	ID=Os10t0188900-01;Name=Os10t0188900-01;Locus_id=Os10g0188900;Note=Conserved hypothetical protein.;Transcript_evidence=AK070874 (DDBJ%2C Best hit);ORF_evidence=Q53QW8 (UniProt);NIAS_FLcDNA=J023074F23;TENOR=Os10t0188900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	6144589	6144590	.	+	.	Parent=Os10t0188900-01
Chr10	irgsp1_rep	CDS	6144591	6144809	.	+	0	Parent=Os10t0188900-01
Chr10	irgsp1_rep	CDS	6144898	6145104	.	+	0	Parent=Os10t0188900-01
Chr10	irgsp1_rep	CDS	6145579	6145677	.	+	0	Parent=Os10t0188900-01
Chr10	irgsp1_rep	CDS	6145837	6145925	.	+	0	Parent=Os10t0188900-01
Chr10	irgsp1_rep	CDS	6147577	6147693	.	+	1	Parent=Os10t0188900-01
Chr10	irgsp1_rep	CDS	6147963	6148068	.	+	1	Parent=Os10t0188900-01
Chr10	irgsp1_rep	CDS	6148223	6148307	.	+	0	Parent=Os10t0188900-01
Chr10	irgsp1_rep	CDS	6148407	6148411	.	+	2	Parent=Os10t0188900-01
Chr10	irgsp1_rep	three_prime_UTR	6148412	6148509	.	+	.	Parent=Os10t0188900-01
Chr10	irgsp1_rep	three_prime_UTR	6149036	6149166	.	+	.	Parent=Os10t0188900-01
Chr10	irgsp1_rep	three_prime_UTR	6149387	6149483	.	+	.	Parent=Os10t0188900-01
Chr10	irgsp1_rep	three_prime_UTR	6150011	6150509	.	+	.	Parent=Os10t0188900-01
Chr10	irgsp1_rep	mRNA	6158408	6161304	.	-	.	ID=Os10t0189001-01;Name=Os10t0189001-01;Locus_id=Os10g0189001;Note=Hypothetical gene.;Transcript_evidence=AK288239 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090013K17;TENOR=Os10t0189001-01;KEGG=Os10t0189001-01
Chr10	irgsp1_rep	five_prime_UTR	6160979	6161304	.	-	.	Parent=Os10t0189001-01
Chr10	irgsp1_rep	CDS	6160715	6160978	.	-	0	Parent=Os10t0189001-01
Chr10	irgsp1_rep	three_prime_UTR	6158408	6160714	.	-	.	Parent=Os10t0189001-01
Chr10	irgsp1_rep	mRNA	6167200	6174593	.	-	.	ID=Os10t0189100-01;Name=Os10t0189100-01;Locus_id=Os10g0189100;RAP-DB Gene Symbol Synonym(s)=OspPGM;RAP-DB Gene Name Synonym(s)=Phosphoglucomutase%2C plastidic phosphoglucomutase;Oryzabase Gene Symbol Synonym(s)=OspPGM%2C pPGM;Oryzabase Gene Name Synonym(s)=Phosphoglucomutase%2C Plastidic phosphoglucomutase;Note=Plastidic phosphoglucomutase%2C Starch synthesis in rice pollen;Transcript_evidence=AK064893;ORF_evidence=Q33AE4;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: organic substance metabolic process (GO:0071704),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: intramolecular transferase activity%2C phosphotransferases (GO:0016868);InterPro=Alpha-D-phosphohexomutase superfamily (IPR005841),Alpha-D-phosphohexomutase%2C alpha/beta/alpha I/II/III (IPR016055),Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain I (IPR005844),Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain II (IPR005845),Alpha-D-phosphohexomutase%2C alpha/beta/alpha domain III (IPR005846),Alpha-D-phosphohexomutase%2C C-terminal (IPR005843),Alpha-D-phosphohexomutase%2C conserved site (IPR016066);NIAS_FLcDNA=J013000K21;Manual Curation=September 14%2C 2016;Literature_PMID=27588462;Oryzabase=12465;TENOR=Os10t0189100-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	6174479	6174593	.	-	.	Parent=Os10t0189100-01
Chr10	irgsp1_rep	CDS	6174317	6174478	.	-	0	Parent=Os10t0189100-01
Chr10	irgsp1_rep	CDS	6173618	6173684	.	-	0	Parent=Os10t0189100-01
Chr10	irgsp1_rep	CDS	6173463	6173506	.	-	2	Parent=Os10t0189100-01
Chr10	irgsp1_rep	CDS	6173263	6173355	.	-	0	Parent=Os10t0189100-01
Chr10	irgsp1_rep	CDS	6173124	6173176	.	-	0	Parent=Os10t0189100-01
Chr10	irgsp1_rep	CDS	6172436	6172487	.	-	1	Parent=Os10t0189100-01
Chr10	irgsp1_rep	CDS	6172282	6172350	.	-	0	Parent=Os10t0189100-01
Chr10	irgsp1_rep	CDS	6171687	6171755	.	-	0	Parent=Os10t0189100-01
Chr10	irgsp1_rep	CDS	6171290	6171412	.	-	0	Parent=Os10t0189100-01
Chr10	irgsp1_rep	CDS	6171163	6171215	.	-	0	Parent=Os10t0189100-01
Chr10	irgsp1_rep	CDS	6170591	6170669	.	-	1	Parent=Os10t0189100-01
Chr10	irgsp1_rep	CDS	6170441	6170505	.	-	0	Parent=Os10t0189100-01
Chr10	irgsp1_rep	CDS	6170270	6170337	.	-	1	Parent=Os10t0189100-01
Chr10	irgsp1_rep	CDS	6169114	6169232	.	-	2	Parent=Os10t0189100-01
Chr10	irgsp1_rep	CDS	6168945	6169019	.	-	0	Parent=Os10t0189100-01
Chr10	irgsp1_rep	CDS	6168728	6168843	.	-	0	Parent=Os10t0189100-01
Chr10	irgsp1_rep	CDS	6168389	6168530	.	-	1	Parent=Os10t0189100-01
Chr10	irgsp1_rep	CDS	6168177	6168258	.	-	0	Parent=Os10t0189100-01
Chr10	irgsp1_rep	CDS	6168035	6168081	.	-	2	Parent=Os10t0189100-01
Chr10	irgsp1_rep	CDS	6167846	6167923	.	-	0	Parent=Os10t0189100-01
Chr10	irgsp1_rep	CDS	6167551	6167656	.	-	0	Parent=Os10t0189100-01
Chr10	irgsp1_rep	CDS	6167385	6167452	.	-	2	Parent=Os10t0189100-01
Chr10	irgsp1_rep	three_prime_UTR	6167200	6167384	.	-	.	Parent=Os10t0189100-01
Chr10	irgsp1_rep	mRNA	6209188	6214147	.	-	.	ID=Os10t0189600-01;Name=Os10t0189600-01;Locus_id=Os10g0189600;Note=Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 domain containing protein.;Transcript_evidence=AK103411 (DDBJ%2C Best hit);ORF_evidence=NP_001147940.1 (RefSeq);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferase%2C class I/classII (IPR004839),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J033128F03;Expression=AK103411;TENOR=Os10t0189600-01;KEGG=Os10t0189600-01 (EC:2.3.1.50)
Chr10	irgsp1_rep	five_prime_UTR	6213860	6214147	.	-	.	Parent=Os10t0189600-01
Chr10	irgsp1_rep	five_prime_UTR	6213410	6213463	.	-	.	Parent=Os10t0189600-01
Chr10	irgsp1_rep	CDS	6213295	6213409	.	-	0	Parent=Os10t0189600-01
Chr10	irgsp1_rep	CDS	6213106	6213200	.	-	2	Parent=Os10t0189600-01
Chr10	irgsp1_rep	CDS	6212891	6212982	.	-	0	Parent=Os10t0189600-01
Chr10	irgsp1_rep	CDS	6212424	6212517	.	-	1	Parent=Os10t0189600-01
Chr10	irgsp1_rep	CDS	6212277	6212349	.	-	0	Parent=Os10t0189600-01
Chr10	irgsp1_rep	CDS	6212063	6212195	.	-	2	Parent=Os10t0189600-01
Chr10	irgsp1_rep	CDS	6211446	6211620	.	-	1	Parent=Os10t0189600-01
Chr10	irgsp1_rep	CDS	6210483	6210623	.	-	0	Parent=Os10t0189600-01
Chr10	irgsp1_rep	CDS	6210195	6210290	.	-	0	Parent=Os10t0189600-01
Chr10	irgsp1_rep	CDS	6209957	6210098	.	-	0	Parent=Os10t0189600-01
Chr10	irgsp1_rep	CDS	6209563	6209690	.	-	2	Parent=Os10t0189600-01
Chr10	irgsp1_rep	CDS	6209311	6209475	.	-	0	Parent=Os10t0189600-01
Chr10	irgsp1_rep	three_prime_UTR	6209188	6209310	.	-	.	Parent=Os10t0189600-01
Chr10	irgsp1_rep	mRNA	6208990	6213955	.	-	.	ID=Os10t0189600-02;Name=Os10t0189600-02;Locus_id=Os10g0189600;Note=Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 domain containing protein.;Transcript_evidence=AK100991 (DDBJ%2C Best hit);ORF_evidence=NP_001147940.1 (RefSeq);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferase%2C class I/classII (IPR004839),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J023146D11;Expression=AK100991;TENOR=Os10t0189600-02;KEGG=Os10t0189600-02 (EC:2.3.1.50)
Chr10	irgsp1_rep	five_prime_UTR	6213860	6213955	.	-	.	Parent=Os10t0189600-02
Chr10	irgsp1_rep	five_prime_UTR	6213410	6213463	.	-	.	Parent=Os10t0189600-02
Chr10	irgsp1_rep	CDS	6213295	6213409	.	-	0	Parent=Os10t0189600-02
Chr10	irgsp1_rep	CDS	6213106	6213200	.	-	2	Parent=Os10t0189600-02
Chr10	irgsp1_rep	CDS	6212891	6212982	.	-	0	Parent=Os10t0189600-02
Chr10	irgsp1_rep	CDS	6212424	6212517	.	-	1	Parent=Os10t0189600-02
Chr10	irgsp1_rep	CDS	6212277	6212349	.	-	0	Parent=Os10t0189600-02
Chr10	irgsp1_rep	CDS	6212063	6212195	.	-	2	Parent=Os10t0189600-02
Chr10	irgsp1_rep	CDS	6211446	6211620	.	-	1	Parent=Os10t0189600-02
Chr10	irgsp1_rep	CDS	6210483	6210623	.	-	0	Parent=Os10t0189600-02
Chr10	irgsp1_rep	CDS	6210195	6210290	.	-	0	Parent=Os10t0189600-02
Chr10	irgsp1_rep	CDS	6209957	6210098	.	-	0	Parent=Os10t0189600-02
Chr10	irgsp1_rep	CDS	6209563	6209690	.	-	2	Parent=Os10t0189600-02
Chr10	irgsp1_rep	CDS	6209311	6209475	.	-	0	Parent=Os10t0189600-02
Chr10	irgsp1_rep	three_prime_UTR	6208990	6209310	.	-	.	Parent=Os10t0189600-02
Chr10	irgsp1_rep	mRNA	6244562	6250840	.	+	.	ID=Os10t0190000-01;Name=Os10t0190000-01;Locus_id=Os10g0190000;CGSNL Gene Symbol=UBC4;CGSNL Gene Name=UBIQUITIN-CONJUGATING ENZYME 4;Oryzabase Gene Symbol Synonym(s)=OsUBC4;Oryzabase Gene Name Synonym(s)=Ubiquitin-conjugating enzyme 4;Note=Similar to Ubiquitin-conjugating enzyme E2 M (EC 6.3.2.19) (Ubiquitin-protein ligase M) (Ubiquitin carrier protein M) (Nedd8-conjugating enzyme Ubc12).;Transcript_evidence=AK064839 (DDBJ%2C Best hit);ORF_evidence=Q7G4N6 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135),Ubiquitin-conjugating enzyme%2C active site (IPR023313);NIAS_FLcDNA=J013000F24;Oryzabase=19552;Expression=AK064839;TENOR=Os10t0190000-01;KEGG=Os10t0190000-01 (EC:6.3.2.19)
Chr10	irgsp1_rep	five_prime_UTR	6244562	6244717	.	+	.	Parent=Os10t0190000-01
Chr10	irgsp1_rep	five_prime_UTR	6245974	6247157	.	+	.	Parent=Os10t0190000-01
Chr10	irgsp1_rep	CDS	6247158	6247167	.	+	0	Parent=Os10t0190000-01
Chr10	irgsp1_rep	CDS	6247639	6247747	.	+	2	Parent=Os10t0190000-01
Chr10	irgsp1_rep	CDS	6248263	6248341	.	+	1	Parent=Os10t0190000-01
Chr10	irgsp1_rep	CDS	6248430	6248546	.	+	0	Parent=Os10t0190000-01
Chr10	irgsp1_rep	CDS	6249684	6249821	.	+	0	Parent=Os10t0190000-01
Chr10	irgsp1_rep	three_prime_UTR	6249822	6250840	.	+	.	Parent=Os10t0190000-01
Chr10	irgsp1_rep	mRNA	6244578	6250065	.	+	.	ID=Os10t0190000-02;Name=Os10t0190000-02;Locus_id=Os10g0190000;CGSNL Gene Symbol=UBC4;CGSNL Gene Name=UBIQUITIN-CONJUGATING ENZYME 4;Oryzabase Gene Symbol Synonym(s)=OsUBC4;Oryzabase Gene Name Synonym(s)=Ubiquitin-conjugating enzyme 4;Note=Similar to Ubiquitin carrier protein.;Transcript_evidence=AK066484 (DDBJ%2C Best hit);ORF_evidence=Q53QR2 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135),Ubiquitin-conjugating enzyme%2C active site (IPR023313);NIAS_FLcDNA=J013070C18;Oryzabase=19552;Expression=AK066484;TENOR=Os10t0190000-02;KEGG=Os10t0190000-02 (EC:6.3.2.19)
Chr10	irgsp1_rep	five_prime_UTR	6244578	6244717	.	+	.	Parent=Os10t0190000-02
Chr10	irgsp1_rep	five_prime_UTR	6245974	6245974	.	+	.	Parent=Os10t0190000-02
Chr10	irgsp1_rep	CDS	6245975	6246086	.	+	0	Parent=Os10t0190000-02
Chr10	irgsp1_rep	CDS	6247639	6247747	.	+	2	Parent=Os10t0190000-02
Chr10	irgsp1_rep	CDS	6248263	6248341	.	+	1	Parent=Os10t0190000-02
Chr10	irgsp1_rep	CDS	6248430	6248546	.	+	0	Parent=Os10t0190000-02
Chr10	irgsp1_rep	CDS	6249684	6249821	.	+	0	Parent=Os10t0190000-02
Chr10	irgsp1_rep	three_prime_UTR	6249822	6250065	.	+	.	Parent=Os10t0190000-02
Chr10	irgsp1_rep	mRNA	6252107	6254450	.	-	.	ID=Os10t0190100-01;Name=Os10t0190100-01;Locus_id=Os10g0190100;Note=Similar to Sulfotransferase domain containing protein%2C expressed.;Transcript_evidence=AK066828 (DDBJ%2C Best hit);ORF_evidence=Q33AD7 (UniProt);GO=Molecular Function: sulfotransferase activity (GO:0008146);InterPro=Sulfotransferase domain (IPR000863);NIAS_FLcDNA=J013075L15;TENOR=Os10t0190100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	6254450	6254450	.	-	.	Parent=Os10t0190100-01
Chr10	irgsp1_rep	CDS	6253854	6254449	.	-	0	Parent=Os10t0190100-01
Chr10	irgsp1_rep	CDS	6252237	6252741	.	-	1	Parent=Os10t0190100-01
Chr10	irgsp1_rep	three_prime_UTR	6252107	6252236	.	-	.	Parent=Os10t0190100-01
Chr10	irgsp1_rep	mRNA	6272649	6276597	.	-	.	ID=Os10t0190500-01;Name=Os10t0190500-01;Locus_id=Os10g0190500;Note=Protein of unknown function DUF594 family protein.;Transcript_evidence=AK070455 (DDBJ%2C Best hit);ORF_evidence=Q8LMU8 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);NIAS_FLcDNA=J023049F05;Expression=AK070455;TENOR=Os10t0190500-01;KEGG=Os10t0190500-01
Chr10	irgsp1_rep	five_prime_UTR	6276468	6276597	.	-	.	Parent=Os10t0190500-01
Chr10	irgsp1_rep	five_prime_UTR	6276052	6276222	.	-	.	Parent=Os10t0190500-01
Chr10	irgsp1_rep	five_prime_UTR	6275670	6275692	.	-	.	Parent=Os10t0190500-01
Chr10	irgsp1_rep	CDS	6275322	6275669	.	-	0	Parent=Os10t0190500-01
Chr10	irgsp1_rep	CDS	6273850	6275250	.	-	0	Parent=Os10t0190500-01
Chr10	irgsp1_rep	CDS	6272934	6273287	.	-	0	Parent=Os10t0190500-01
Chr10	irgsp1_rep	three_prime_UTR	6272649	6272933	.	-	.	Parent=Os10t0190500-01
Chr10	irgsp1_rep	mRNA	6274076	6275647	.	+	.	ID=Os10t0190600-00;Name=Os10t0190600-00;Locus_id=Os10g0190600;Note=Hypothetical protein.;Transcript_evidence=BT041543 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0190600-00
Chr10	irgsp1_rep	five_prime_UTR	6274076	6274282	.	+	.	Parent=Os10t0190600-00
Chr10	irgsp1_rep	CDS	6274283	6274702	.	+	0	Parent=Os10t0190600-00
Chr10	irgsp1_rep	three_prime_UTR	6274703	6275200	.	+	.	Parent=Os10t0190600-00
Chr10	irgsp1_rep	three_prime_UTR	6275260	6275647	.	+	.	Parent=Os10t0190600-00
Chr10	irgsp1_rep	mRNA	6287535	6291740	.	+	.	ID=Os10t0190800-01;Name=Os10t0190800-01;Locus_id=Os10g0190800;Note=Similar to predicted protein.;Transcript_evidence=AK241322 (DDBJ%2C Best hit);ORF_evidence=NP_171704.2 (RefSeq);GO=Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Nitroreductase-like (IPR000415);NIAS_FLcDNA=J065142K05;TENOR=Os10t0190800-01;KEGG=Os10t0190800-01
Chr10	irgsp1_rep	five_prime_UTR	6287535	6287581	.	+	.	Parent=Os10t0190800-01
Chr10	irgsp1_rep	CDS	6287582	6289102	.	+	0	Parent=Os10t0190800-01
Chr10	irgsp1_rep	CDS	6289361	6289550	.	+	0	Parent=Os10t0190800-01
Chr10	irgsp1_rep	CDS	6290578	6290705	.	+	2	Parent=Os10t0190800-01
Chr10	irgsp1_rep	three_prime_UTR	6290706	6291740	.	+	.	Parent=Os10t0190800-01
Chr10	irgsp1_rep	mRNA	6295745	6301714	.	+	.	ID=Os10t0190900-01;Name=Os10t0190900-01;Locus_id=Os10g0190900;Note=Multi antimicrobial extrusion protein MatE family protein.;Transcript_evidence=AK070457 (DDBJ%2C Best hit);ORF_evidence=Q10A00 (UniProt);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);NIAS_FLcDNA=J023050C03;Expression=AK070457;TENOR=Os10t0190900-01;KEGG=Os10t0190900-01
Chr10	irgsp1_rep	five_prime_UTR	6295745	6295745	.	+	.	Parent=Os10t0190900-01
Chr10	irgsp1_rep	CDS	6295746	6296106	.	+	0	Parent=Os10t0190900-01
Chr10	irgsp1_rep	CDS	6296202	6296634	.	+	2	Parent=Os10t0190900-01
Chr10	irgsp1_rep	CDS	6297392	6297585	.	+	1	Parent=Os10t0190900-01
Chr10	irgsp1_rep	CDS	6297883	6298001	.	+	2	Parent=Os10t0190900-01
Chr10	irgsp1_rep	CDS	6298083	6298169	.	+	0	Parent=Os10t0190900-01
Chr10	irgsp1_rep	CDS	6301440	6301499	.	+	0	Parent=Os10t0190900-01
Chr10	irgsp1_rep	three_prime_UTR	6301500	6301714	.	+	.	Parent=Os10t0190900-01
Chr10	irgsp1_rep	mRNA	6299888	6300329	.	-	.	ID=Os10t0191000-00;Name=Os10t0191000-00;Locus_id=Os10g0191000;Note=Hypothetical protein.;Transcript_evidence=EU976224 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0191000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	6300267	6300329	.	-	.	Parent=Os10t0191000-00
Chr10	irgsp1_rep	CDS	6299888	6300266	.	-	0	Parent=Os10t0191000-00
Chr10	irgsp1_rep	mRNA	6305257	6307331	.	-	.	ID=Os10t0191100-00;Name=Os10t0191100-00;Locus_id=Os10g0191100;Oryzabase Gene Symbol Synonym(s)=OsLLA8%2C LLA8%2C OsHyPRP27%2C HyPRP27;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein-like AGP 8%2C non-specific lipid transfer protein-like arabinogalactan protein 8%2C Hybrid Proline-Rich Protein 27;Note=Similar to Protease inhibitor/seed storage/LTP family protein.;Transcript_evidence=CT835784 (DDBJ%2C Best hit);ORF_evidence=Q7G4M5 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);Oryzabase=11335;TENOR=Os10t0191100-00;KEGG=Os10t0191100-00
Chr10	irgsp1_rep	five_prime_UTR	6307276	6307331	.	-	.	Parent=Os10t0191100-00
Chr10	irgsp1_rep	CDS	6306654	6307275	.	-	0	Parent=Os10t0191100-00
Chr10	irgsp1_rep	CDS	6305927	6305953	.	-	2	Parent=Os10t0191100-00
Chr10	irgsp1_rep	CDS	6305436	6305536	.	-	2	Parent=Os10t0191100-00
Chr10	irgsp1_rep	three_prime_UTR	6305257	6305435	.	-	.	Parent=Os10t0191100-00
Chr10	irgsp1_rep	mRNA	6354861	6356018	.	-	.	ID=Os10t0191201-00;Name=Os10t0191201-00;Locus_id=Os10g0191201;Note=Hypothetical gene.;Transcript_evidence=CT835691 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;TENOR=Os10t0191201-00;KEGG=Os10t0191201-00
Chr10	irgsp1_rep	five_prime_UTR	6355978	6356018	.	-	.	Parent=Os10t0191201-00
Chr10	irgsp1_rep	CDS	6355823	6355977	.	-	0	Parent=Os10t0191201-00
Chr10	irgsp1_rep	CDS	6355488	6355569	.	-	1	Parent=Os10t0191201-00
Chr10	irgsp1_rep	three_prime_UTR	6355101	6355487	.	-	.	Parent=Os10t0191201-00
Chr10	irgsp1_rep	three_prime_UTR	6354861	6354929	.	-	.	Parent=Os10t0191201-00
Chr10	irgsp1_rep	mRNA	6370102	6370799	.	+	.	ID=Os10t0191300-01;Name=Os10t0191300-01;Locus_id=Os10g0191300;CGSNL Gene Symbol=PR1-101;CGSNL Gene Name=PATHOGENESIS-RELATED GENE 1-101;Oryzabase Gene Symbol Synonym(s)=OsPR1#101%2C OsPR1-101%2C OsPR1L2%2C PR1L2;Oryzabase Gene Name Synonym(s)=pathogenesis-related protein 1-101%2C PR protein 1-101%2C pathogenesis-related protein 1 like protein 2;Note=Similar to PR-1a pathogenesis related protein (Hv-1a) precursor.;Transcript_evidence=AK243406 (DDBJ%2C Best hit);ORF_evidence=Q40035 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Allergen V5/Tpx-1-related (IPR001283),Ves allergen (IPR002413),CAP domain (IPR014044),Allergen V5/Tpx-1-related%2C conserved site (IPR018244);NIAS_FLcDNA=J100065F02;Oryzabase=13356;TENOR=Os10t0191300-01;KEGG=Os10t0191300-01
Chr10	irgsp1_rep	five_prime_UTR	6370102	6370123	.	+	.	Parent=Os10t0191300-01
Chr10	irgsp1_rep	CDS	6370124	6370654	.	+	0	Parent=Os10t0191300-01
Chr10	irgsp1_rep	three_prime_UTR	6370655	6370799	.	+	.	Parent=Os10t0191300-01
Chr10	irgsp1_rep	mRNA	6385254	6386050	.	-	.	ID=Os10t0191600-00;Name=Os10t0191600-00;Locus_id=Os10g0191600;Note=Similar to 006-203-B11%2C full insert sequence.;Transcript_evidence=AK370502 (DDBJ);ORF_evidence=B7E5L2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: pyridoxal phosphate biosynthetic process (GO:0042823),Molecular Function: catalytic activity (GO:0003824);InterPro=Vitamin B6 biosynthesis protein (IPR001852),Ribulose-phosphate binding barrel (IPR011060),Aldolase-type TIM barrel (IPR013785);TENOR=Os10t0191600-00
Chr10	irgsp1_rep	five_prime_UTR	6385812	6386050	.	-	.	Parent=Os10t0191600-00
Chr10	irgsp1_rep	CDS	6385254	6385811	.	-	0	Parent=Os10t0191600-00
Chr10	irgsp1_rep	mRNA	6404506	6405513	.	+	.	ID=Os10t0191900-01;Name=Os10t0191900-01;Locus_id=Os10g0191900;RAP-DB Gene Symbol Synonym(s)=NF-YC12%2C OsNF-YC12;RAP-DB Gene Name Synonym(s)=Nuclear factor-Y transcription factor subunit C12;CGSNL Gene Symbol=HAP5L;CGSNL Gene Name=HAP5L SUBUNIT OF CCAAT-BOX BINDING COMPLEX;Oryzabase Gene Symbol Synonym(s)=OsEnS-133%2C OsHAP5L%2C OsNF-YC12%2C NF-YC12%2C OsNF-YC11%2C NF-YC11%2C NFYC11;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 133%2C Nuclear Factor Y subunit C12%2C NUCLEAR FACTOR-Y subunit C11%2C NUCLEAR FACTOR-Y subunit NF-YC11%2C NF-YC transcription factor 11%2C NF-YC subunit 11%2C NF-YC family 11;Note=Nuclear factor-Y transcription factor subunit C%2C Regulation of endosperm development and accumulation of seed storage substances;Transcript_evidence=ab initio prediction;ORF_evidence=Q8LMX6;GO=Molecular Function: protein heterodimerization activity (GO:0046982);InterPro=Histone-fold (IPR009072),Transcription factor CBF/NF-Y/archaeal histone domain (IPR003958);Manual Curation=June 21%2C 2019;Literature_PMID=31211389;Oryzabase=18423;TENOR=Os10t0191900-00;KEGG=Os10t0191900-00;Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737)
Chr10	irgsp1_rep	CDS	6404506	6405513	.	+	0	Parent=Os10t0191900-01
Chr10	irgsp1_rep	mRNA	6416709	6417205	.	+	.	ID=Os10t0192301-00;Name=Os10t0192301-00;Locus_id=Os10g0192301;Note=Non-protein coding transcript.;Transcript_evidence=FP100159 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0192301-00
Chr10	irgsp1_rep	exon	6416709	6416803	.	+	.	Parent=Os10t0192301-00
Chr10	irgsp1_rep	exon	6416893	6417205	.	+	.	Parent=Os10t0192301-00
Chr10	irgsp1_rep	mRNA	6484463	6486741	.	+	.	ID=Os10t0193100-00;Name=Os10t0193100-00;Locus_id=Os10g0193100;CGSNL Gene Symbol=HYPRP28;CGSNL Gene Name=HYBRID PROLINE-RICH PROTEIN 28;Oryzabase Gene Symbol Synonym(s)=OsHyPRP28%2C HyPRP28;Oryzabase Gene Name Synonym(s)=Hybrid Proline-Rich Protein 28;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q33AD2 (UniProt);Oryzabase=23418;TENOR=Os10t0193100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	6484463	6484970	.	+	0	Parent=Os10t0193100-00
Chr10	irgsp1_rep	CDS	6486008	6486040	.	+	2	Parent=Os10t0193100-00
Chr10	irgsp1_rep	CDS	6486647	6486741	.	+	2	Parent=Os10t0193100-00
Chr10	irgsp1_rep	mRNA	6497068	6510300	.	+	.	ID=Os10t0193500-01;Name=Os10t0193500-01;Locus_id=Os10g0193500;Oryzabase Gene Symbol Synonym(s)=OsSTA239;Note=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor domain containing protein.;Transcript_evidence=AK107022 (DDBJ%2C Best hit);ORF_evidence=Q8H865 (UniProt);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612);NIAS_FLcDNA=002-121-A02;Oryzabase=19509;Expression=AK107022;TENOR=Os10t0193500-01;KEGG=Os10t0193500-01
Chr10	irgsp1_rep	five_prime_UTR	6497068	6497108	.	+	.	Parent=Os10t0193500-01
Chr10	irgsp1_rep	CDS	6497109	6497526	.	+	0	Parent=Os10t0193500-01
Chr10	irgsp1_rep	CDS	6507489	6507530	.	+	2	Parent=Os10t0193500-01
Chr10	irgsp1_rep	CDS	6510091	6510185	.	+	2	Parent=Os10t0193500-01
Chr10	irgsp1_rep	three_prime_UTR	6510186	6510300	.	+	.	Parent=Os10t0193500-01
Chr10	irgsp1_rep	mRNA	6503535	6506576	.	+	.	ID=Os10t0193601-01;Name=Os10t0193601-01;Locus_id=Os10g0193601;Note=Non-protein coding transcript.;Transcript_evidence=AK289064 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090093O16;TENOR=Os10t0193601-01
Chr10	irgsp1_rep	exon	6503535	6506576	.	+	.	Parent=Os10t0193601-01
Chr10	irgsp1_rep	mRNA	6540786	6544129	.	+	.	ID=Os10t0194200-01;Name=Os10t0194200-01;Locus_id=Os10g0194200;CGSNL Gene Symbol=CAD1;CGSNL Gene Name=CINNAMYL ALCOHOL DEHYDROGENASE 1;Oryzabase Gene Symbol Synonym(s)=OsCAD1;Oryzabase Gene Name Synonym(s)=Cinnamyl alcohol dehydrogenase 1;Note=Similar to Mannitol dehydrogenase.;Transcript_evidence=AK068221 (DDBJ%2C Best hit);ORF_evidence=B4FBW5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),Alcohol dehydrogenase%2C zinc-type%2C conserved site (IPR002328),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040),Polyketide synthase%2C enoylreductase (IPR020843);NIAS_FLcDNA=J013135D23;Oryzabase=10430;TENOR=Os10t0194200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	6540786	6540916	.	+	.	Parent=Os10t0194200-01
Chr10	irgsp1_rep	five_prime_UTR	6541749	6541758	.	+	.	Parent=Os10t0194200-01
Chr10	irgsp1_rep	CDS	6541759	6541847	.	+	0	Parent=Os10t0194200-01
Chr10	irgsp1_rep	CDS	6542230	6542343	.	+	1	Parent=Os10t0194200-01
Chr10	irgsp1_rep	CDS	6542494	6542721	.	+	1	Parent=Os10t0194200-01
Chr10	irgsp1_rep	CDS	6542981	6543266	.	+	1	Parent=Os10t0194200-01
Chr10	irgsp1_rep	CDS	6543433	6543583	.	+	0	Parent=Os10t0194200-01
Chr10	irgsp1_rep	CDS	6543698	6543894	.	+	2	Parent=Os10t0194200-01
Chr10	irgsp1_rep	three_prime_UTR	6543895	6544129	.	+	.	Parent=Os10t0194200-01
Chr10	irgsp1_rep	mRNA	6541756	6543900	.	-	.	ID=Os10t0194225-00;Name=Os10t0194225-00;Locus_id=Os10g0194225;Note=Non-protein coding transcript.;Transcript_evidence=tplb0028g09 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os10t0194225-00
Chr10	irgsp1_rep	exon	6543690	6543900	.	-	.	Parent=Os10t0194225-00
Chr10	irgsp1_rep	exon	6543435	6543573	.	-	.	Parent=Os10t0194225-00
Chr10	irgsp1_rep	exon	6542979	6543268	.	-	.	Parent=Os10t0194225-00
Chr10	irgsp1_rep	exon	6542493	6542718	.	-	.	Parent=Os10t0194225-00
Chr10	irgsp1_rep	exon	6542238	6542342	.	-	.	Parent=Os10t0194225-00
Chr10	irgsp1_rep	exon	6541756	6541858	.	-	.	Parent=Os10t0194225-00
Chr10	irgsp1_rep	mRNA	6549476	6551497	.	-	.	ID=Os10t0194250-01;Name=Os10t0194250-01;Locus_id=Os10g0194250;Note=Non-protein coding transcript.;Transcript_evidence=AK242101 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J075143M04;TENOR=Os10t0194250-01
Chr10	irgsp1_rep	exon	6551413	6551497	.	-	.	Parent=Os10t0194250-01
Chr10	irgsp1_rep	exon	6550737	6550831	.	-	.	Parent=Os10t0194250-01
Chr10	irgsp1_rep	exon	6549476	6550021	.	-	.	Parent=Os10t0194250-01
Chr10	irgsp1_rep	mRNA	6552284	6555101	.	-	.	ID=Os10t0194300-01;Name=Os10t0194300-01;Locus_id=Os10g0194300;Note=Protein of unknown function DUF724 domain containing protein.;Transcript_evidence=AK288320 (DDBJ%2C Best hit);ORF_evidence=Q8H858 (UniProt);InterPro=Protein of unknown function DUF724 (IPR007930),Aminotransferase-like%2C plant mobile domain (IPR019557);NIAS_FLcDNA=J090022B03;TENOR=Os10t0194300-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	6555006	6555101	.	-	.	Parent=Os10t0194300-01
Chr10	irgsp1_rep	CDS	6552417	6555005	.	-	0	Parent=Os10t0194300-01
Chr10	irgsp1_rep	three_prime_UTR	6552284	6552416	.	-	.	Parent=Os10t0194300-01
Chr10	irgsp1_rep	mRNA	6555886	6556270	.	+	.	ID=Os10t0194400-01;Name=Os10t0194400-01;Locus_id=Os10g0194400;Note=Hypothetical gene.;Transcript_evidence=AK063188 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-112-B07;Expression=AK063188;TENOR=Os10t0194400-01;KEGG=Os10t0194400-01
Chr10	irgsp1_rep	five_prime_UTR	6555886	6555886	.	+	.	Parent=Os10t0194400-01
Chr10	irgsp1_rep	CDS	6555887	6556141	.	+	0	Parent=Os10t0194400-01
Chr10	irgsp1_rep	three_prime_UTR	6556142	6556270	.	+	.	Parent=Os10t0194400-01
Chr10	irgsp1_rep	mRNA	6577603	6581966	.	+	.	ID=Os10t0195000-01;Name=Os10t0195000-01;Locus_id=Os10g0195000;Oryzabase Gene Symbol Synonym(s)=OsSTA240;Oryzabase Gene Name Synonym(s)=MATE efflux protein;Note=Multi antimicrobial extrusion protein MatE family protein.;Transcript_evidence=AK106877 (DDBJ%2C Best hit);ORF_evidence=NP_001152524.1 (RefSeq);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);NIAS_FLcDNA=002-118-E04;Oryzabase=18253;Expression=AK106877;TENOR=Os10t0195000-01;KEGG=Os10t0195000-01
Chr10	irgsp1_rep	five_prime_UTR	6577603	6577665	.	+	.	Parent=Os10t0195000-01
Chr10	irgsp1_rep	CDS	6577666	6577869	.	+	0	Parent=Os10t0195000-01
Chr10	irgsp1_rep	CDS	6577973	6578517	.	+	0	Parent=Os10t0195000-01
Chr10	irgsp1_rep	CDS	6578991	6579077	.	+	1	Parent=Os10t0195000-01
Chr10	irgsp1_rep	CDS	6579186	6579242	.	+	1	Parent=Os10t0195000-01
Chr10	irgsp1_rep	CDS	6580897	6581135	.	+	1	Parent=Os10t0195000-01
Chr10	irgsp1_rep	CDS	6581254	6581372	.	+	2	Parent=Os10t0195000-01
Chr10	irgsp1_rep	CDS	6581460	6581546	.	+	0	Parent=Os10t0195000-01
Chr10	irgsp1_rep	CDS	6581628	6581684	.	+	0	Parent=Os10t0195000-01
Chr10	irgsp1_rep	three_prime_UTR	6581685	6581966	.	+	.	Parent=Os10t0195000-01
Chr10	irgsp1_rep	mRNA	6577945	6578237	.	-	.	ID=Os10t0195050-00;Name=Os10t0195050-00;Locus_id=Os10g0195050;Note=Hypothetical protein.;Transcript_evidence=EU951653 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0195050-00
Chr10	irgsp1_rep	five_prime_UTR	6578237	6578237	.	-	.	Parent=Os10t0195050-00
Chr10	irgsp1_rep	CDS	6577945	6578236	.	-	0	Parent=Os10t0195050-00
Chr10	irgsp1_rep	mRNA	6583644	6586293	.	-	.	ID=Os10t0195100-00;Name=Os10t0195100-00;Locus_id=Os10g0195100;Note=Hypothetical conserved gene.;Transcript_evidence=AK064576 (DDBJ%2C Secondary hit);ORF_evidence=Q8H801 (UniProt);InterPro=Transposase%2C Ptta/En/Spm%2C plant (IPR004252),Transposase%2C Tnp1/En/Spm-like (IPR004264);Expression=AK064576;TENOR=Os10t0195100-00;KEGG=Os10t0195100-00
Chr10	irgsp1_rep	five_prime_UTR	6586280	6586293	.	-	.	Parent=Os10t0195100-00
Chr10	irgsp1_rep	CDS	6586255	6586279	.	-	0	Parent=Os10t0195100-00
Chr10	irgsp1_rep	CDS	6585899	6586107	.	-	2	Parent=Os10t0195100-00
Chr10	irgsp1_rep	CDS	6585676	6585820	.	-	0	Parent=Os10t0195100-00
Chr10	irgsp1_rep	CDS	6585320	6585588	.	-	2	Parent=Os10t0195100-00
Chr10	irgsp1_rep	CDS	6585040	6585243	.	-	0	Parent=Os10t0195100-00
Chr10	irgsp1_rep	CDS	6584873	6584965	.	-	0	Parent=Os10t0195100-00
Chr10	irgsp1_rep	CDS	6584698	6584796	.	-	0	Parent=Os10t0195100-00
Chr10	irgsp1_rep	CDS	6584268	6584624	.	-	0	Parent=Os10t0195100-00
Chr10	irgsp1_rep	CDS	6583938	6584156	.	-	0	Parent=Os10t0195100-00
Chr10	irgsp1_rep	CDS	6583644	6583838	.	-	0	Parent=Os10t0195100-00
Chr10	irgsp1_rep	mRNA	6589419	6591490	.	-	.	ID=Os10t0195175-00;Name=Os10t0195175-00;Locus_id=Os10g0195175;Note=Hypothetical gene.;Transcript_evidence=AK067230 (DDBJ%2C Secondary hit);ORF_evidence=NP_001064287.2 (RefSeq);TENOR=Os10t0195175-00
Chr10	irgsp1_rep	five_prime_UTR	6591129	6591490	.	-	.	Parent=Os10t0195175-00
Chr10	irgsp1_rep	five_prime_UTR	6590446	6590523	.	-	.	Parent=Os10t0195175-00
Chr10	irgsp1_rep	five_prime_UTR	6590226	6590330	.	-	.	Parent=Os10t0195175-00
Chr10	irgsp1_rep	five_prime_UTR	6589925	6589933	.	-	.	Parent=Os10t0195175-00
Chr10	irgsp1_rep	CDS	6589896	6589924	.	-	0	Parent=Os10t0195175-00
Chr10	irgsp1_rep	CDS	6589419	6589805	.	-	1	Parent=Os10t0195175-00
Chr10	irgsp1_rep	mRNA	6597058	6599557	.	-	.	ID=Os10t0195250-01;Name=Os10t0195250-01;Locus_id=Os10g0195250;Note=Conserved hypothetical protein.;Transcript_evidence=AK241098 (DDBJ%2C Best hit);ORF_evidence=B9G7W2 (UniProt);NIAS_FLcDNA=J065077G06;TENOR=Os10t0195250-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	6599512	6599557	.	-	.	Parent=Os10t0195250-01
Chr10	irgsp1_rep	CDS	6599363	6599511	.	-	0	Parent=Os10t0195250-01
Chr10	irgsp1_rep	CDS	6597269	6597299	.	-	1	Parent=Os10t0195250-01
Chr10	irgsp1_rep	three_prime_UTR	6597058	6597268	.	-	.	Parent=Os10t0195250-01
Chr10	irgsp1_rep	mRNA	6639765	6645325	.	+	.	ID=Os10t0195600-01;Name=Os10t0195600-01;Locus_id=Os10g0195600;CGSNL Gene Symbol=SPL18;CGSNL Gene Name=SPOTTED LEAF 18;Oryzabase Gene Symbol Synonym(s)=Spl18%2C OsAT1;Oryzabase Gene Name Synonym(s)=spotted leaf 18;Note=Transferase family protein.;Transcript_evidence=AK100207 (DDBJ%2C Best hit);ORF_evidence=NP_001148798.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J023042A21;Oryzabase=8168;Expression=AK100207;TENOR=Os10t0195600-01;KEGG=Os10t0195600-01
Chr10	irgsp1_rep	five_prime_UTR	6639765	6640065	.	+	.	Parent=Os10t0195600-01
Chr10	irgsp1_rep	five_prime_UTR	6642151	6642272	.	+	.	Parent=Os10t0195600-01
Chr10	irgsp1_rep	CDS	6642273	6642737	.	+	0	Parent=Os10t0195600-01
Chr10	irgsp1_rep	CDS	6644006	6644998	.	+	0	Parent=Os10t0195600-01
Chr10	irgsp1_rep	three_prime_UTR	6644999	6645325	.	+	.	Parent=Os10t0195600-01
Chr10	irgsp1_rep	mRNA	6698731	6702375	.	+	.	ID=Os10t0196000-01;Name=Os10t0196000-01;Locus_id=Os10g0196000;Note=Similar to CytoChrome P450 CYP98A7.;Transcript_evidence=AK068170 (DDBJ%2C Best hit);ORF_evidence=B6TPZ5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);NIAS_FLcDNA=J013132J20;TENOR=Os10t0196000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	6698731	6698759	.	+	.	Parent=Os10t0196000-01
Chr10	irgsp1_rep	CDS	6698760	6699038	.	+	0	Parent=Os10t0196000-01
Chr10	irgsp1_rep	three_prime_UTR	6699039	6699259	.	+	.	Parent=Os10t0196000-01
Chr10	irgsp1_rep	three_prime_UTR	6701115	6702375	.	+	.	Parent=Os10t0196000-01
Chr10	irgsp1_rep	mRNA	6715606	6716328	.	+	.	ID=Os10t0196100-00;Name=Os10t0196100-00;Locus_id=Os10g0196100;Note=Similar to CytoChrome P450 98A1.;Transcript_evidence=ab initio prediction;ORF_evidence=O48956 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);TENOR=Os10t0196100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	6715606	6716328	.	+	0	Parent=Os10t0196100-00
Chr10	irgsp1_rep	mRNA	6715984	6716629	.	-	.	ID=Os10t0196400-00;Name=Os10t0196400-00;Locus_id=Os10g0196400;Note=Hypothetical protein.;Transcript_evidence=EU942896 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0196400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	6716629	6716629	.	-	.	Parent=Os10t0196400-00
Chr10	irgsp1_rep	CDS	6715984	6716628	.	-	0	Parent=Os10t0196400-00
Chr10	irgsp1_rep	mRNA	6736206	6739956	.	-	.	ID=Os10t0197000-00;Name=Os10t0197000-00;Locus_id=Os10g0197000;Note=Protein of unknown function DUF3615 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G7W6 (UniProt);InterPro=Protein of unknown function DUF3615 (IPR022059);TENOR=Os10t0197000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	6738433	6739956	.	-	0	Parent=Os10t0197000-00
Chr10	irgsp1_rep	CDS	6737849	6738086	.	-	0	Parent=Os10t0197000-00
Chr10	irgsp1_rep	CDS	6737070	6737382	.	-	2	Parent=Os10t0197000-00
Chr10	irgsp1_rep	CDS	6736206	6736227	.	-	1	Parent=Os10t0197000-00
Chr10	irgsp1_rep	mRNA	6749481	6749720	.	+	.	ID=Os10t0197101-00;Name=Os10t0197101-00;Locus_id=Os10g0197101;Note=Similar to HAT family dimerisation domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7G4F1 (UniProt);TENOR=Os10t0197101-00;KEGG=Os10t0197101-00
Chr10	irgsp1_rep	CDS	6749481	6749720	.	+	0	Parent=Os10t0197101-00
Chr10	irgsp1_rep	mRNA	6756529	6760887	.	-	.	ID=Os10t0197300-01;Name=Os10t0197300-01;Locus_id=Os10g0197300;Note=Hypothetical conserved gene.;Transcript_evidence=AK288531 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090045C12;TENOR=Os10t0197300-01;KEGG=Os10t0197300-01
Chr10	irgsp1_rep	five_prime_UTR	6760588	6760887	.	-	.	Parent=Os10t0197300-01
Chr10	irgsp1_rep	CDS	6760288	6760587	.	-	0	Parent=Os10t0197300-01
Chr10	irgsp1_rep	three_prime_UTR	6756529	6760287	.	-	.	Parent=Os10t0197300-01
Chr10	irgsp1_rep	mRNA	6782218	6791974	.	-	.	ID=Os10t0197600-01;Name=Os10t0197600-01;Locus_id=Os10g0197600;Note=Hypothetical conserved gene.;Transcript_evidence=AK241071 (DDBJ%2C Best hit);ORF_evidence=Q8GSD3 (UniProt);InterPro=Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=J065067A04;TENOR=Os10t0197600-01;KEGG=Os10t0197600-01
Chr10	irgsp1_rep	five_prime_UTR	6791827	6791974	.	-	.	Parent=Os10t0197600-01
Chr10	irgsp1_rep	five_prime_UTR	6791658	6791747	.	-	.	Parent=Os10t0197600-01
Chr10	irgsp1_rep	five_prime_UTR	6791508	6791569	.	-	.	Parent=Os10t0197600-01
Chr10	irgsp1_rep	five_prime_UTR	6785066	6785215	.	-	.	Parent=Os10t0197600-01
Chr10	irgsp1_rep	five_prime_UTR	6784703	6784976	.	-	.	Parent=Os10t0197600-01
Chr10	irgsp1_rep	five_prime_UTR	6784456	6784618	.	-	.	Parent=Os10t0197600-01
Chr10	irgsp1_rep	CDS	6784209	6784455	.	-	0	Parent=Os10t0197600-01
Chr10	irgsp1_rep	CDS	6784060	6784138	.	-	2	Parent=Os10t0197600-01
Chr10	irgsp1_rep	CDS	6783850	6783970	.	-	1	Parent=Os10t0197600-01
Chr10	irgsp1_rep	CDS	6783702	6783758	.	-	0	Parent=Os10t0197600-01
Chr10	irgsp1_rep	three_prime_UTR	6783604	6783701	.	-	.	Parent=Os10t0197600-01
Chr10	irgsp1_rep	three_prime_UTR	6782819	6783525	.	-	.	Parent=Os10t0197600-01
Chr10	irgsp1_rep	three_prime_UTR	6782649	6782738	.	-	.	Parent=Os10t0197600-01
Chr10	irgsp1_rep	three_prime_UTR	6782218	6782558	.	-	.	Parent=Os10t0197600-01
Chr10	irgsp1_rep	mRNA	6793901	6796961	.	+	.	ID=Os10t0197700-00;Name=Os10t0197700-00;Locus_id=Os10g0197700;Note=Hypothetical conserved gene.;Transcript_evidence=tplb0014l16 (Wheat FLcDNA);ORF_evidence=NP_001064293.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);TENOR=Os10t0197700-00;KEGG=Os10t0197700-00
Chr10	irgsp1_rep	CDS	6793901	6794274	.	+	0	Parent=Os10t0197700-00
Chr10	irgsp1_rep	CDS	6794981	6795043	.	+	1	Parent=Os10t0197700-00
Chr10	irgsp1_rep	CDS	6795173	6795286	.	+	1	Parent=Os10t0197700-00
Chr10	irgsp1_rep	CDS	6795384	6795624	.	+	1	Parent=Os10t0197700-00
Chr10	irgsp1_rep	CDS	6796262	6796420	.	+	0	Parent=Os10t0197700-00
Chr10	irgsp1_rep	CDS	6796504	6796655	.	+	0	Parent=Os10t0197700-00
Chr10	irgsp1_rep	CDS	6796799	6796949	.	+	1	Parent=Os10t0197700-00
Chr10	irgsp1_rep	three_prime_UTR	6796950	6796961	.	+	.	Parent=Os10t0197700-00
Chr10	irgsp1_rep	mRNA	6797449	6798792	.	-	.	ID=Os10t0197800-00;Name=Os10t0197800-00;Locus_id=Os10g0197800;Oryzabase Gene Symbol Synonym(s)=OsFbox544%2C Os_F0652;Oryzabase Gene Name Synonym(s)=F-box protein 544;Note=F-box domain%2C Skp2-like domain containing protein.;Transcript_evidence=BT034650 (DDBJ);ORF_evidence=Q7G4E5 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);Oryzabase=17313;TENOR=Os10t0197800-00
Chr10	irgsp1_rep	CDS	6797449	6798792	.	-	0	Parent=Os10t0197800-00
Chr10	irgsp1_rep	mRNA	6837342	6839786	.	-	.	ID=Os10t0198100-01;Name=Os10t0198100-01;Locus_id=Os10g0198100;Note=Conserved hypothetical protein.;Transcript_evidence=AK074024 (DDBJ%2C Best hit);ORF_evidence=A3C3C4 (UniProt);NIAS_FLcDNA=J033077I15;Expression=AK074024;TENOR=Os10t0198100-01;KEGG=Os10t0198100-01
Chr10	irgsp1_rep	five_prime_UTR	6839786	6839786	.	-	.	Parent=Os10t0198100-01
Chr10	irgsp1_rep	CDS	6839741	6839785	.	-	0	Parent=Os10t0198100-01
Chr10	irgsp1_rep	CDS	6838024	6838236	.	-	0	Parent=Os10t0198100-01
Chr10	irgsp1_rep	CDS	6837648	6837920	.	-	0	Parent=Os10t0198100-01
Chr10	irgsp1_rep	CDS	6837397	6837576	.	-	0	Parent=Os10t0198100-01
Chr10	irgsp1_rep	three_prime_UTR	6837342	6837396	.	-	.	Parent=Os10t0198100-01
Chr10	irgsp1_rep	mRNA	6842035	6842533	.	-	.	ID=Os10t0198300-00;Name=Os10t0198300-00;Locus_id=Os10g0198300;Note=Non-protein coding transcript.;Transcript_evidence=CU405802 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os10t0198300-00
Chr10	irgsp1_rep	exon	6842035	6842533	.	-	.	Parent=Os10t0198300-00
Chr10	irgsp1_rep	mRNA	6845043	6846735	.	-	.	ID=Os10t0198333-01;Name=Os10t0198333-01;Locus_id=Os10g0198333;Note=Conserved hypothetical protein.;Transcript_evidence=AK241141 (DDBJ%2C Best hit);ORF_evidence=A2WW33 (UniProt);NIAS_FLcDNA=J065099M17;TENOR=Os10t0198333-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	6845391	6846735	.	-	.	Parent=Os10t0198333-01
Chr10	irgsp1_rep	CDS	6845154	6845390	.	-	0	Parent=Os10t0198333-01
Chr10	irgsp1_rep	three_prime_UTR	6845043	6845153	.	-	.	Parent=Os10t0198333-01
Chr10	irgsp1_rep	mRNA	6850184	6853240	.	-	.	ID=Os10t0198366-00;Name=Os10t0198366-00;Locus_id=Os10g0198366;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G817 (UniProt);TENOR=Os10t0198366-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	6853220	6853240	.	-	0	Parent=Os10t0198366-00
Chr10	irgsp1_rep	CDS	6852843	6853028	.	-	0	Parent=Os10t0198366-00
Chr10	irgsp1_rep	CDS	6851921	6851998	.	-	0	Parent=Os10t0198366-00
Chr10	irgsp1_rep	CDS	6851767	6851879	.	-	0	Parent=Os10t0198366-00
Chr10	irgsp1_rep	CDS	6850184	6850211	.	-	1	Parent=Os10t0198366-00
Chr10	irgsp1_rep	mRNA	6868486	6878295	.	+	.	ID=Os10t0198600-01;Name=Os10t0198600-01;Locus_id=Os10g0198600;Note=Intron-encoded nuclease 2 domain containing protein.;Transcript_evidence=AK068249 (DDBJ%2C Best hit);ORF_evidence=Q109Y2 (UniProt);GO=Molecular Function: endonuclease activity (GO:0004519);InterPro=Intron-encoded nuclease 2 (IPR003611);NIAS_FLcDNA=J013146P20;Expression=AK068249;TENOR=Os10t0198600-01;KEGG=Os10t0198600-01
Chr10	irgsp1_rep	five_prime_UTR	6868486	6868644	.	+	.	Parent=Os10t0198600-01
Chr10	irgsp1_rep	CDS	6868645	6869008	.	+	0	Parent=Os10t0198600-01
Chr10	irgsp1_rep	CDS	6869307	6869359	.	+	2	Parent=Os10t0198600-01
Chr10	irgsp1_rep	CDS	6870644	6870681	.	+	0	Parent=Os10t0198600-01
Chr10	irgsp1_rep	CDS	6875679	6875997	.	+	1	Parent=Os10t0198600-01
Chr10	irgsp1_rep	CDS	6876236	6876546	.	+	0	Parent=Os10t0198600-01
Chr10	irgsp1_rep	CDS	6877153	6877762	.	+	1	Parent=Os10t0198600-01
Chr10	irgsp1_rep	three_prime_UTR	6877763	6878295	.	+	.	Parent=Os10t0198600-01
Chr10	irgsp1_rep	mRNA	6897044	6905955	.	+	.	ID=Os10t0198900-00;Name=Os10t0198900-00;Locus_id=Os10g0198900;Oryzabase Gene Symbol Synonym(s)=OsEnS-134;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 134;Note=Drug/metabolite transporter domain containing protein.;Transcript_evidence=BT037044 (DDBJ);ORF_evidence=Q8H8G2 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);Oryzabase=18424;TENOR=Os10t0198900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	6897044	6897246	.	+	0	Parent=Os10t0198900-00
Chr10	irgsp1_rep	CDS	6897751	6897813	.	+	1	Parent=Os10t0198900-00
Chr10	irgsp1_rep	CDS	6903028	6903144	.	+	1	Parent=Os10t0198900-00
Chr10	irgsp1_rep	CDS	6903321	6903555	.	+	1	Parent=Os10t0198900-00
Chr10	irgsp1_rep	CDS	6903748	6903906	.	+	0	Parent=Os10t0198900-00
Chr10	irgsp1_rep	CDS	6904211	6904433	.	+	0	Parent=Os10t0198900-00
Chr10	irgsp1_rep	CDS	6905802	6905878	.	+	2	Parent=Os10t0198900-00
Chr10	irgsp1_rep	three_prime_UTR	6905879	6905955	.	+	.	Parent=Os10t0198900-00
Chr10	irgsp1_rep	mRNA	6946843	6953361	.	+	.	ID=Os10t0199500-01;Name=Os10t0199500-01;Locus_id=Os10g0199500;Note=Hypothetical conserved gene.;Transcript_evidence=AK243266 (DDBJ%2C Best hit);ORF_evidence=Q8H8G2 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=J100049F07;TENOR=Os10t0199500-01;KEGG=Os10t0199500-01
Chr10	irgsp1_rep	five_prime_UTR	6946843	6946856	.	+	.	Parent=Os10t0199500-01
Chr10	irgsp1_rep	CDS	6946857	6947062	.	+	0	Parent=Os10t0199500-01
Chr10	irgsp1_rep	CDS	6947426	6947488	.	+	1	Parent=Os10t0199500-01
Chr10	irgsp1_rep	CDS	6950339	6950455	.	+	1	Parent=Os10t0199500-01
Chr10	irgsp1_rep	CDS	6950971	6951274	.	+	1	Parent=Os10t0199500-01
Chr10	irgsp1_rep	three_prime_UTR	6951275	6951589	.	+	.	Parent=Os10t0199500-01
Chr10	irgsp1_rep	three_prime_UTR	6951819	6951970	.	+	.	Parent=Os10t0199500-01
Chr10	irgsp1_rep	three_prime_UTR	6953171	6953361	.	+	.	Parent=Os10t0199500-01
Chr10	irgsp1_rep	mRNA	7026783	7031173	.	-	.	ID=Os10t0200000-01;Name=Os10t0200000-01;Locus_id=Os10g0200000;CGSNL Gene Symbol=RLCK295;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 295;Oryzabase Gene Symbol Synonym(s)=OsRLCK295;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 295;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK122036 (DDBJ%2C Best hit);ORF_evidence=Q33AC4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: structural molecule activity (GO:0005198),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Major sperm protein (IPR000535),Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),PapD-like (IPR008962),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033112O18;Oryzabase=18971;Expression=AK122036;TENOR=Os10t0200000-01;KEGG=Os10t0200000-01
Chr10	irgsp1_rep	five_prime_UTR	7030714	7031173	.	-	.	Parent=Os10t0200000-01
Chr10	irgsp1_rep	five_prime_UTR	7030007	7030064	.	-	.	Parent=Os10t0200000-01
Chr10	irgsp1_rep	five_prime_UTR	7029425	7029464	.	-	.	Parent=Os10t0200000-01
Chr10	irgsp1_rep	CDS	7029326	7029424	.	-	0	Parent=Os10t0200000-01
Chr10	irgsp1_rep	CDS	7028719	7028983	.	-	0	Parent=Os10t0200000-01
Chr10	irgsp1_rep	CDS	7028356	7028590	.	-	2	Parent=Os10t0200000-01
Chr10	irgsp1_rep	CDS	7028080	7028230	.	-	1	Parent=Os10t0200000-01
Chr10	irgsp1_rep	CDS	7027677	7027961	.	-	0	Parent=Os10t0200000-01
Chr10	irgsp1_rep	CDS	7026893	7027294	.	-	0	Parent=Os10t0200000-01
Chr10	irgsp1_rep	three_prime_UTR	7026783	7026892	.	-	.	Parent=Os10t0200000-01
Chr10	irgsp1_rep	mRNA	7023019	7029356	.	-	.	ID=Os10t0200000-02;Name=Os10t0200000-02;Locus_id=Os10g0200000;CGSNL Gene Symbol=RLCK295;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 295;Oryzabase Gene Symbol Synonym(s)=OsRLCK295;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 295;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=AK064423 (DDBJ%2C Best hit);ORF_evidence=Q33AC4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: structural molecule activity (GO:0005198),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Major sperm protein (IPR000535),Ubiquitin (IPR000626),Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),PapD-like (IPR008962),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Ubiquitin supergroup (IPR019955),Ubiquitin subgroup (IPR019956),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=002-110-C03;Oryzabase=18971;Expression=AK064423;TENOR=Os10t0200000-02;KEGG=Os10t0200000-02
Chr10	irgsp1_rep	five_prime_UTR	7029356	7029356	.	-	.	Parent=Os10t0200000-02
Chr10	irgsp1_rep	CDS	7029326	7029355	.	-	0	Parent=Os10t0200000-02
Chr10	irgsp1_rep	CDS	7028719	7028983	.	-	0	Parent=Os10t0200000-02
Chr10	irgsp1_rep	CDS	7028356	7028590	.	-	2	Parent=Os10t0200000-02
Chr10	irgsp1_rep	CDS	7028080	7028230	.	-	1	Parent=Os10t0200000-02
Chr10	irgsp1_rep	CDS	7027677	7027961	.	-	0	Parent=Os10t0200000-02
Chr10	irgsp1_rep	CDS	7026917	7027294	.	-	0	Parent=Os10t0200000-02
Chr10	irgsp1_rep	CDS	7023403	7024377	.	-	0	Parent=Os10t0200000-02
Chr10	irgsp1_rep	three_prime_UTR	7023019	7023402	.	-	.	Parent=Os10t0200000-02
Chr10	irgsp1_rep	mRNA	7114764	7116090	.	-	.	ID=Os10t0200700-01;Name=Os10t0200700-01;Locus_id=Os10g0200700;Note=Conserved hypothetical protein.;Transcript_evidence=AK061523 (DDBJ%2C Best hit);ORF_evidence=A2XID9 (UniProt);NIAS_FLcDNA=006-310-B07;Expression=AK061523;TENOR=Os10t0200700-01;KEGG=Os10t0200700-01
Chr10	irgsp1_rep	five_prime_UTR	7115924	7116090	.	-	.	Parent=Os10t0200700-01
Chr10	irgsp1_rep	CDS	7114973	7115923	.	-	0	Parent=Os10t0200700-01
Chr10	irgsp1_rep	three_prime_UTR	7114764	7114972	.	-	.	Parent=Os10t0200700-01
Chr10	irgsp1_rep	mRNA	7121108	7141151	.	-	.	ID=Os10t0200800-00;Name=Os10t0200800-00;Locus_id=Os10g0200800;Note=Similar to Phosphatidylinositol glycan synthesis class F protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q0PGJ2 (UniProt);GO=Biological Process: GPI anchor biosynthetic process (GO:0006506),Cellular Component: endoplasmic reticulum membrane (GO:0005789),Cellular Component: integral to membrane (GO:0016021);InterPro=GPI biosynthesis protein Pig-F (IPR009580);TENOR=Os10t0200800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	7141008	7141151	.	-	0	Parent=Os10t0200800-00
Chr10	irgsp1_rep	CDS	7122455	7122503	.	-	0	Parent=Os10t0200800-00
Chr10	irgsp1_rep	CDS	7122298	7122346	.	-	2	Parent=Os10t0200800-00
Chr10	irgsp1_rep	CDS	7121845	7121962	.	-	1	Parent=Os10t0200800-00
Chr10	irgsp1_rep	CDS	7121108	7121221	.	-	0	Parent=Os10t0200800-00
Chr10	irgsp1_rep	mRNA	7270047	7270697	.	-	.	ID=Os10t0202200-00;Name=Os10t0202200-00;Locus_id=Os10g0202200;Note=Hypothetical conserved gene.;Transcript_evidence=AK354788 (DDBJ);ORF_evidence=NP_001150740.1 (RefSeq);TENOR=Os10t0202200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	7270665	7270697	.	-	.	Parent=Os10t0202200-00
Chr10	irgsp1_rep	CDS	7270319	7270664	.	-	0	Parent=Os10t0202200-00
Chr10	irgsp1_rep	CDS	7270218	7270252	.	-	2	Parent=Os10t0202200-00
Chr10	irgsp1_rep	three_prime_UTR	7270047	7270217	.	-	.	Parent=Os10t0202200-00
Chr10	irgsp1_rep	mRNA	7271466	7271912	.	+	.	ID=Os10t0202350-00;Name=Os10t0202350-00;Locus_id=Os10g0202350;Note=Similar to Seven transmembrane-spanning protein.;Transcript_evidence=AY084049 (DDBJ);ORF_evidence=Q94FR4 (UniProt);TENOR=Os10t0202350-00
Chr10	irgsp1_rep	CDS	7271466	7271885	.	+	0	Parent=Os10t0202350-00
Chr10	irgsp1_rep	three_prime_UTR	7271886	7271912	.	+	.	Parent=Os10t0202350-00
Chr10	irgsp1_rep	mRNA	7301658	7304913	.	-	.	ID=Os10t0202501-01;Name=Os10t0202501-01;Locus_id=Os10g0202501;Note=Hypothetical gene.;Transcript_evidence=AK288978 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090085M13;TENOR=Os10t0202501-01;KEGG=Os10t0202501-01
Chr10	irgsp1_rep	five_prime_UTR	7303194	7304913	.	-	.	Parent=Os10t0202501-01
Chr10	irgsp1_rep	CDS	7302873	7303193	.	-	0	Parent=Os10t0202501-01
Chr10	irgsp1_rep	three_prime_UTR	7301658	7302872	.	-	.	Parent=Os10t0202501-01
Chr10	irgsp1_rep	mRNA	7310471	7313575	.	-	.	ID=Os10t0202900-00;Name=Os10t0202900-00;Locus_id=Os10g0202900;Note=Hypothetical conserved gene.;Transcript_evidence=CU406444 (DDBJ%2C Best hit);ORF_evidence=Q8S645 (UniProt);TENOR=Os10t0202900-00;KEGG=Os10t0202900-00
Chr10	irgsp1_rep	five_prime_UTR	7313421	7313575	.	-	.	Parent=Os10t0202900-00
Chr10	irgsp1_rep	CDS	7313327	7313420	.	-	0	Parent=Os10t0202900-00
Chr10	irgsp1_rep	CDS	7313159	7313251	.	-	2	Parent=Os10t0202900-00
Chr10	irgsp1_rep	CDS	7312981	7313082	.	-	2	Parent=Os10t0202900-00
Chr10	irgsp1_rep	CDS	7312189	7312257	.	-	2	Parent=Os10t0202900-00
Chr10	irgsp1_rep	CDS	7310800	7310879	.	-	2	Parent=Os10t0202900-00
Chr10	irgsp1_rep	three_prime_UTR	7310471	7310799	.	-	.	Parent=Os10t0202900-00
Chr10	irgsp1_rep	mRNA	7334830	7338831	.	-	.	ID=Os10t0203000-01;Name=Os10t0203000-01;Locus_id=Os10g0203000;CGSNL Gene Symbol=IREN;CGSNL Gene Name=IMMUNE RELATED ENDONUCLEASE;Oryzabase Gene Name Synonym(s)=immune related endonuclease;Note=Endonuclease/exonuclease/phosphatase domain containing protein.;Transcript_evidence=AK100514 (DDBJ%2C Best hit);ORF_evidence=NP_001078754.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Endonuclease/exonuclease/phosphatase (IPR005135),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247);NIAS_FLcDNA=J023099P14;Oryzabase=15825;Expression=AK100514;TENOR=Os10t0203000-01;KEGG=Os10t0203000-01
Chr10	irgsp1_rep	five_prime_UTR	7338665	7338831	.	-	.	Parent=Os10t0203000-01
Chr10	irgsp1_rep	CDS	7338662	7338664	.	-	0	Parent=Os10t0203000-01
Chr10	irgsp1_rep	CDS	7338333	7338518	.	-	0	Parent=Os10t0203000-01
Chr10	irgsp1_rep	CDS	7338116	7338214	.	-	0	Parent=Os10t0203000-01
Chr10	irgsp1_rep	CDS	7337899	7338004	.	-	0	Parent=Os10t0203000-01
Chr10	irgsp1_rep	CDS	7337007	7337230	.	-	2	Parent=Os10t0203000-01
Chr10	irgsp1_rep	CDS	7336842	7336918	.	-	0	Parent=Os10t0203000-01
Chr10	irgsp1_rep	CDS	7336634	7336748	.	-	1	Parent=Os10t0203000-01
Chr10	irgsp1_rep	CDS	7336393	7336518	.	-	0	Parent=Os10t0203000-01
Chr10	irgsp1_rep	CDS	7336113	7336226	.	-	0	Parent=Os10t0203000-01
Chr10	irgsp1_rep	CDS	7335925	7336029	.	-	0	Parent=Os10t0203000-01
Chr10	irgsp1_rep	CDS	7335091	7335351	.	-	0	Parent=Os10t0203000-01
Chr10	irgsp1_rep	three_prime_UTR	7334830	7335090	.	-	.	Parent=Os10t0203000-01
Chr10	irgsp1_rep	mRNA	7334820	7337328	.	-	.	ID=Os10t0203000-02;Name=Os10t0203000-02;Locus_id=Os10g0203000;CGSNL Gene Symbol=IREN;CGSNL Gene Name=IMMUNE RELATED ENDONUCLEASE;Oryzabase Gene Name Synonym(s)=immune related endonuclease;Note=Similar to predicted protein.;Transcript_evidence=AK099880 (DDBJ%2C Best hit);ORF_evidence=NP_001078754.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Endonuclease/exonuclease/phosphatase (IPR005135),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247);NIAS_FLcDNA=J013111M06;Oryzabase=15825;Expression=AK099880;TENOR=Os10t0203000-02;KEGG=Os10t0203000-02
Chr10	irgsp1_rep	five_prime_UTR	7337262	7337328	.	-	.	Parent=Os10t0203000-02
Chr10	irgsp1_rep	CDS	7337007	7337261	.	-	0	Parent=Os10t0203000-02
Chr10	irgsp1_rep	CDS	7336842	7336918	.	-	0	Parent=Os10t0203000-02
Chr10	irgsp1_rep	CDS	7336634	7336748	.	-	1	Parent=Os10t0203000-02
Chr10	irgsp1_rep	CDS	7336393	7336518	.	-	0	Parent=Os10t0203000-02
Chr10	irgsp1_rep	CDS	7336113	7336226	.	-	0	Parent=Os10t0203000-02
Chr10	irgsp1_rep	CDS	7335925	7336029	.	-	0	Parent=Os10t0203000-02
Chr10	irgsp1_rep	CDS	7335091	7335351	.	-	0	Parent=Os10t0203000-02
Chr10	irgsp1_rep	three_prime_UTR	7334820	7335090	.	-	.	Parent=Os10t0203000-02
Chr10	irgsp1_rep	mRNA	7341903	7342367	.	-	.	ID=Os10t0203100-00;Name=Os10t0203100-00;Locus_id=Os10g0203100;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B8BG38 (UniProt);TENOR=Os10t0203100-00;KEGG=Os10t0203100-00
Chr10	irgsp1_rep	CDS	7341903	7342367	.	-	0	Parent=Os10t0203100-00
Chr10	irgsp1_rep	mRNA	7385766	7395013	.	+	.	ID=Os10t0203600-01;Name=Os10t0203600-01;Locus_id=Os10g0203600;Note=DNA-binding SAP domain containing protein.;Transcript_evidence=AK064659 (DDBJ%2C Best hit);ORF_evidence=Q33A94 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=DNA-binding SAP (IPR003034);NIAS_FLcDNA=002-114-H04;TENOR=Os10t0203600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	7385766	7385939	.	+	.	Parent=Os10t0203600-01
Chr10	irgsp1_rep	five_prime_UTR	7386045	7386211	.	+	.	Parent=Os10t0203600-01
Chr10	irgsp1_rep	CDS	7386212	7386385	.	+	0	Parent=Os10t0203600-01
Chr10	irgsp1_rep	CDS	7387283	7387357	.	+	0	Parent=Os10t0203600-01
Chr10	irgsp1_rep	CDS	7387435	7387561	.	+	0	Parent=Os10t0203600-01
Chr10	irgsp1_rep	CDS	7390358	7390422	.	+	2	Parent=Os10t0203600-01
Chr10	irgsp1_rep	CDS	7390547	7390617	.	+	0	Parent=Os10t0203600-01
Chr10	irgsp1_rep	CDS	7390734	7390843	.	+	1	Parent=Os10t0203600-01
Chr10	irgsp1_rep	CDS	7391067	7391104	.	+	2	Parent=Os10t0203600-01
Chr10	irgsp1_rep	CDS	7391876	7392011	.	+	0	Parent=Os10t0203600-01
Chr10	irgsp1_rep	CDS	7392101	7392271	.	+	2	Parent=Os10t0203600-01
Chr10	irgsp1_rep	CDS	7392433	7392507	.	+	2	Parent=Os10t0203600-01
Chr10	irgsp1_rep	CDS	7392625	7392686	.	+	2	Parent=Os10t0203600-01
Chr10	irgsp1_rep	CDS	7392998	7393064	.	+	0	Parent=Os10t0203600-01
Chr10	irgsp1_rep	CDS	7393153	7393202	.	+	2	Parent=Os10t0203600-01
Chr10	irgsp1_rep	CDS	7394229	7394462	.	+	0	Parent=Os10t0203600-01
Chr10	irgsp1_rep	CDS	7394550	7394687	.	+	0	Parent=Os10t0203600-01
Chr10	irgsp1_rep	CDS	7394786	7394923	.	+	0	Parent=Os10t0203600-01
Chr10	irgsp1_rep	three_prime_UTR	7394924	7395013	.	+	.	Parent=Os10t0203600-01
Chr10	irgsp1_rep	mRNA	7414709	7419483	.	-	.	ID=Os10t0204100-01;Name=Os10t0204100-01;Locus_id=Os10g0204100;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK120883 (DDBJ%2C Best hit);ORF_evidence=NP_566356.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J023028G02;Expression=AK120883;TENOR=Os10t0204100-01;KEGG=Os10t0204100-01
Chr10	irgsp1_rep	five_prime_UTR	7419265	7419483	.	-	.	Parent=Os10t0204100-01
Chr10	irgsp1_rep	CDS	7418684	7419264	.	-	0	Parent=Os10t0204100-01
Chr10	irgsp1_rep	CDS	7415504	7416005	.	-	1	Parent=Os10t0204100-01
Chr10	irgsp1_rep	CDS	7415139	7415333	.	-	0	Parent=Os10t0204100-01
Chr10	irgsp1_rep	three_prime_UTR	7414709	7415138	.	-	.	Parent=Os10t0204100-01
Chr10	irgsp1_rep	mRNA	7435159	7442007	.	+	.	ID=Os10t0204300-01;Name=Os10t0204300-01;Locus_id=Os10g0204300;Note=Similar to Phosphoenolpyruvate carboxykinase.;Transcript_evidence=AK072115 (DDBJ%2C Best hit);ORF_evidence=NP_001146178.1 (RefSeq);NIAS_FLcDNA=J013123M19;Expression=AK072115;TENOR=Os10t0204300-01;KEGG=Os10t0204300-01 (EC:4.1.1.49)
Chr10	irgsp1_rep	five_prime_UTR	7435159	7435912	.	+	.	Parent=Os10t0204300-01
Chr10	irgsp1_rep	CDS	7435913	7436059	.	+	0	Parent=Os10t0204300-01
Chr10	irgsp1_rep	three_prime_UTR	7436060	7438007	.	+	.	Parent=Os10t0204300-01
Chr10	irgsp1_rep	three_prime_UTR	7441575	7441702	.	+	.	Parent=Os10t0204300-01
Chr10	irgsp1_rep	three_prime_UTR	7441838	7442007	.	+	.	Parent=Os10t0204300-01
Chr10	irgsp1_rep	mRNA	7438368	7444003	.	-	.	ID=Os10t0204400-01;Name=Os10t0204400-01;Locus_id=Os10g0204400;Oryzabase Gene Symbol Synonym(s)=PEPCK%2C OsPEPCK;Oryzabase Gene Name Synonym(s)=PEP carboxykinase%2C Phosphoenolpyruvate carboxykinase;Note=Similar to Phosphoenolpyruvate carboxykinase (Fragment).;Transcript_evidence=AK103839 (DDBJ%2C Best hit);ORF_evidence=Q5KQS7 (UniProt);GO=Biological Process: gluconeogenesis (GO:0006094),Molecular Function: phosphoenolpyruvate carboxykinase activity (GO:0004611),Molecular Function: phosphoenolpyruvate carboxykinase (ATP) activity (GO:0004612),Molecular Function: ATP binding (GO:0005524),Molecular Function: purine nucleotide binding (GO:0017076);InterPro=Phosphoenolpyruvate carboxykinase%2C ATP-utilising (IPR001272),Phosphoenolpyruvate carboxykinase%2C N-terminal (IPR008210),Phosphoenolpyruvate carboxykinase%2C C-terminal (IPR013035),Phosphoenolpyruvate carboxykinase (ATP)%2C conserved site (IPR015994);NIAS_FLcDNA=J033148H10;Oryzabase=11418;Expression=AK103839;TENOR=Os10t0204400-01;KEGG=Os10t0204400-01 (EC:4.1.1.49)
Chr10	irgsp1_rep	five_prime_UTR	7443949	7444003	.	-	.	Parent=Os10t0204400-01
Chr10	irgsp1_rep	five_prime_UTR	7443841	7443851	.	-	.	Parent=Os10t0204400-01
Chr10	irgsp1_rep	CDS	7443650	7443840	.	-	0	Parent=Os10t0204400-01
Chr10	irgsp1_rep	CDS	7442318	7442502	.	-	1	Parent=Os10t0204400-01
Chr10	irgsp1_rep	CDS	7441848	7441998	.	-	2	Parent=Os10t0204400-01
Chr10	irgsp1_rep	CDS	7441651	7441735	.	-	1	Parent=Os10t0204400-01
Chr10	irgsp1_rep	CDS	7441294	7441394	.	-	0	Parent=Os10t0204400-01
Chr10	irgsp1_rep	CDS	7440720	7441018	.	-	1	Parent=Os10t0204400-01
Chr10	irgsp1_rep	CDS	7440445	7440618	.	-	2	Parent=Os10t0204400-01
Chr10	irgsp1_rep	CDS	7440029	7440094	.	-	2	Parent=Os10t0204400-01
Chr10	irgsp1_rep	CDS	7439752	7439930	.	-	2	Parent=Os10t0204400-01
Chr10	irgsp1_rep	CDS	7439495	7439664	.	-	0	Parent=Os10t0204400-01
Chr10	irgsp1_rep	CDS	7438864	7439032	.	-	1	Parent=Os10t0204400-01
Chr10	irgsp1_rep	CDS	7438638	7438781	.	-	0	Parent=Os10t0204400-01
Chr10	irgsp1_rep	three_prime_UTR	7438368	7438637	.	-	.	Parent=Os10t0204400-01
Chr10	irgsp1_rep	mRNA	7496071	7496943	.	+	.	ID=Os10t0205200-01;Name=Os10t0205200-01;Locus_id=Os10g0205200;Note=Similar to Ufm1-conjugating enzyme 1 (Ubiquitin-fold modifier conjugating enzyme 1).;Transcript_evidence=AK059551 (DDBJ%2C Best hit);ORF_evidence=A2Z5S8 (UniProt);InterPro=Ubiquitin-fold modifier-conjugating enzyme 1 (IPR014806),Ubiquitin-conjugating enzyme/RWD-like (IPR016135);NIAS_FLcDNA=001-029-G02;Expression=AK059551;TENOR=Os10t0205200-01;KEGG=Os10t0205200-01
Chr10	irgsp1_rep	five_prime_UTR	7496071	7496154	.	+	.	Parent=Os10t0205200-01
Chr10	irgsp1_rep	CDS	7496155	7496487	.	+	0	Parent=Os10t0205200-01
Chr10	irgsp1_rep	CDS	7496594	7496818	.	+	0	Parent=Os10t0205200-01
Chr10	irgsp1_rep	three_prime_UTR	7496819	7496943	.	+	.	Parent=Os10t0205200-01
Chr10	irgsp1_rep	mRNA	7496095	7498985	.	+	.	ID=Os10t0205200-02;Name=Os10t0205200-02;Locus_id=Os10g0205200;Note=Similar to Ufm1-conjugating enzyme 1 (Ubiquitin-fold modifier conjugating enzyme 1).;Transcript_evidence=AK108741 (DDBJ%2C Best hit);ORF_evidence=A2Z5S8 (UniProt);InterPro=Ubiquitin-fold modifier-conjugating enzyme 1 (IPR014806),Ubiquitin-conjugating enzyme/RWD-like (IPR016135);NIAS_FLcDNA=002-150-E05;Expression=AK108741;TENOR=Os10t0205200-02;KEGG=Os10t0205200-02
Chr10	irgsp1_rep	five_prime_UTR	7496095	7496154	.	+	.	Parent=Os10t0205200-02
Chr10	irgsp1_rep	CDS	7496155	7496487	.	+	0	Parent=Os10t0205200-02
Chr10	irgsp1_rep	CDS	7496594	7496818	.	+	0	Parent=Os10t0205200-02
Chr10	irgsp1_rep	three_prime_UTR	7496819	7496820	.	+	.	Parent=Os10t0205200-02
Chr10	irgsp1_rep	three_prime_UTR	7498059	7498985	.	+	.	Parent=Os10t0205200-02
Chr10	irgsp1_rep	mRNA	7499511	7503453	.	-	.	ID=Os10t0205300-01;Name=Os10t0205300-01;Locus_id=Os10g0205300;Oryzabase Gene Symbol Synonym(s)=OsGT43G%2C GT43G%2C OsIRX9L%2C IRX9L;Oryzabase Gene Name Synonym(s)=glycosyltransferase family GT43 member G;Note=Glycosyl transferase%2C family 43 protein.;Transcript_evidence=AK107374 (DDBJ%2C Best hit);ORF_evidence=Q50HW3 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity (GO:0015018);InterPro=Glycosyl transferase%2C family 43 (IPR005027);NIAS_FLcDNA=002-127-B07;Oryzabase=15272;Expression=AK107374;TENOR=Os10t0205300-01;KEGG=Os10t0205300-01
Chr10	irgsp1_rep	five_prime_UTR	7503234	7503453	.	-	.	Parent=Os10t0205300-01
Chr10	irgsp1_rep	CDS	7502620	7503233	.	-	0	Parent=Os10t0205300-01
Chr10	irgsp1_rep	CDS	7502196	7502445	.	-	1	Parent=Os10t0205300-01
Chr10	irgsp1_rep	CDS	7500511	7500702	.	-	0	Parent=Os10t0205300-01
Chr10	irgsp1_rep	three_prime_UTR	7500492	7500510	.	-	.	Parent=Os10t0205300-01
Chr10	irgsp1_rep	three_prime_UTR	7499511	7499794	.	-	.	Parent=Os10t0205300-01
Chr10	irgsp1_rep	mRNA	7502603	7503201	.	+	.	ID=Os10t0205400-00;Name=Os10t0205400-00;Locus_id=Os10g0205400;Note=Non-protein coding transcript.;Transcript_evidence=BT034702 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0205400-00
Chr10	irgsp1_rep	exon	7502603	7503201	.	+	.	Parent=Os10t0205400-00
Chr10	irgsp1_rep	mRNA	7514954	7519284	.	+	.	ID=Os10t0205500-01;Name=Os10t0205500-01;Locus_id=Os10g0205500;CGSNL Gene Symbol=PDR13;CGSNL Gene Name=PLEIOTROPIC DRUG RESISTANCE 13;Oryzabase Gene Symbol Synonym(s)=OsPDR13;Oryzabase Gene Name Synonym(s)=pleiotropic drug resistance 13;Note=Similar to PDR3 ABC transporter.;Transcript_evidence=AK064534 (DDBJ%2C Best hit);ORF_evidence=Q8S628 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887);InterPro=ABC transporter-like (IPR003439),ABC-2 type transporter (IPR013525);NIAS_FLcDNA=002-111-H07;Oryzabase=13073;Expression=AK064534;TENOR=Os10t0205500-01;KEGG=Os10t0205500-01
Chr10	irgsp1_rep	CDS	7514954	7515196	.	+	0	Parent=Os10t0205500-01
Chr10	irgsp1_rep	CDS	7515286	7515369	.	+	0	Parent=Os10t0205500-01
Chr10	irgsp1_rep	CDS	7516386	7516519	.	+	0	Parent=Os10t0205500-01
Chr10	irgsp1_rep	CDS	7516608	7516835	.	+	1	Parent=Os10t0205500-01
Chr10	irgsp1_rep	CDS	7517829	7518057	.	+	1	Parent=Os10t0205500-01
Chr10	irgsp1_rep	three_prime_UTR	7518058	7518485	.	+	.	Parent=Os10t0205500-01
Chr10	irgsp1_rep	three_prime_UTR	7518801	7519284	.	+	.	Parent=Os10t0205500-01
Chr10	irgsp1_rep	mRNA	7529345	7530484	.	-	.	ID=Os10t0205700-01;Name=Os10t0205700-01;Locus_id=Os10g0205700;Note=Pollen Ole e 1 allergen/extensin domain containing protein.;Transcript_evidence=AK060177 (DDBJ%2C Best hit);ORF_evidence=A3C3E5 (UniProt);InterPro=Pollen Ole e 1 allergen/extensin (IPR006041);NIAS_FLcDNA=006-312-A05;Expression=AK060177;TENOR=Os10t0205700-01;KEGG=Os10t0205700-01
Chr10	irgsp1_rep	five_prime_UTR	7530458	7530484	.	-	.	Parent=Os10t0205700-01
Chr10	irgsp1_rep	CDS	7530274	7530457	.	-	0	Parent=Os10t0205700-01
Chr10	irgsp1_rep	CDS	7529517	7530163	.	-	2	Parent=Os10t0205700-01
Chr10	irgsp1_rep	three_prime_UTR	7529345	7529516	.	-	.	Parent=Os10t0205700-01
Chr10	irgsp1_rep	mRNA	7539086	7542262	.	-	.	ID=Os10t0205802-01;Name=Os10t0205802-01;Locus_id=Os10g0205802;Note=Conserved hypothetical protein.;Transcript_evidence=AK287790 (DDBJ%2C Best hit);ORF_evidence=B9G7Y5 (UniProt);NIAS_FLcDNA=J065173A07;TENOR=Os10t0205802-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	7541888	7542262	.	-	.	Parent=Os10t0205802-01
Chr10	irgsp1_rep	five_prime_UTR	7541211	7541325	.	-	.	Parent=Os10t0205802-01
Chr10	irgsp1_rep	five_prime_UTR	7539876	7540434	.	-	.	Parent=Os10t0205802-01
Chr10	irgsp1_rep	CDS	7539612	7539875	.	-	0	Parent=Os10t0205802-01
Chr10	irgsp1_rep	three_prime_UTR	7539086	7539611	.	-	.	Parent=Os10t0205802-01
Chr10	irgsp1_rep	mRNA	7543010	7544177	.	-	.	ID=Os10t0206000-00;Name=Os10t0206000-00;Locus_id=Os10g0206000;Note=Non-protein coding transcript.;Transcript_evidence=CT833578 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os10t0206000-00
Chr10	irgsp1_rep	exon	7543891	7544177	.	-	.	Parent=Os10t0206000-00
Chr10	irgsp1_rep	exon	7543676	7543760	.	-	.	Parent=Os10t0206000-00
Chr10	irgsp1_rep	exon	7543010	7543403	.	-	.	Parent=Os10t0206000-00
Chr10	irgsp1_rep	mRNA	7557620	7564109	.	+	.	ID=Os10t0206500-00;Name=Os10t0206500-00;Locus_id=Os10g0206500;Note=Pollen Ole e 1 allergen/extensin domain containing protein.;Transcript_evidence=CT835786 (DDBJ%2C Best hit);ORF_evidence=NP_001064313.1 (RefSeq);InterPro=Pollen Ole e 1 allergen/extensin (IPR006041);TENOR=Os10t0206500-00;KEGG=Os10t0206500-00
Chr10	irgsp1_rep	five_prime_UTR	7557620	7557668	.	+	.	Parent=Os10t0206500-00
Chr10	irgsp1_rep	CDS	7557669	7557888	.	+	0	Parent=Os10t0206500-00
Chr10	irgsp1_rep	CDS	7563511	7563857	.	+	2	Parent=Os10t0206500-00
Chr10	irgsp1_rep	three_prime_UTR	7563858	7564109	.	+	.	Parent=Os10t0206500-00
Chr10	irgsp1_rep	mRNA	7561032	7561873	.	+	.	ID=Os10t0206650-00;Name=Os10t0206650-00;Locus_id=Os10g0206650;Note=Non-protein coding transcript.;Transcript_evidence=CT837948 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os10t0206650-00
Chr10	irgsp1_rep	exon	7561032	7561873	.	+	.	Parent=Os10t0206650-00
Chr10	irgsp1_rep	mRNA	7574038	7579887	.	+	.	ID=Os10t0206800-01;Name=Os10t0206800-01;Locus_id=Os10g0206800;RAP-DB Gene Symbol Synonym(s)=OsFRDL2;RAP-DB Gene Name Synonym(s)=FRD3-like protein 2;Oryzabase Gene Symbol Synonym(s)=OsFRDL2;Oryzabase Gene Name Synonym(s)=FRD3-like protein 2;Note=Multidrug and toxic compound extrusion (MATE) protein%2C Al-induced secretion of citrate;Transcript_evidence=AK101612;ORF_evidence=Q8S6Q1;GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297),Cellular Component: membrane (GO:0016020);InterPro=Multi antimicrobial extrusion protein (IPR002528);NIAS_FLcDNA=J033052E02;Manual Curation=May 18%2C 2016;Literature_PMID=26872836;Oryzabase=11140;Expression=AK101612;TENOR=Os10t0206800-01;KEGG=Os10t0206800-01
Chr10	irgsp1_rep	five_prime_UTR	7574038	7574162	.	+	.	Parent=Os10t0206800-01
Chr10	irgsp1_rep	CDS	7574163	7574275	.	+	0	Parent=Os10t0206800-01
Chr10	irgsp1_rep	CDS	7574365	7574486	.	+	1	Parent=Os10t0206800-01
Chr10	irgsp1_rep	CDS	7575678	7575884	.	+	2	Parent=Os10t0206800-01
Chr10	irgsp1_rep	CDS	7575966	7576153	.	+	2	Parent=Os10t0206800-01
Chr10	irgsp1_rep	CDS	7576555	7576690	.	+	0	Parent=Os10t0206800-01
Chr10	irgsp1_rep	CDS	7577035	7577131	.	+	2	Parent=Os10t0206800-01
Chr10	irgsp1_rep	CDS	7577262	7577362	.	+	1	Parent=Os10t0206800-01
Chr10	irgsp1_rep	CDS	7577706	7577869	.	+	2	Parent=Os10t0206800-01
Chr10	irgsp1_rep	CDS	7578091	7578279	.	+	0	Parent=Os10t0206800-01
Chr10	irgsp1_rep	CDS	7578467	7578561	.	+	0	Parent=Os10t0206800-01
Chr10	irgsp1_rep	CDS	7578651	7578773	.	+	1	Parent=Os10t0206800-01
Chr10	irgsp1_rep	CDS	7579497	7579575	.	+	1	Parent=Os10t0206800-01
Chr10	irgsp1_rep	three_prime_UTR	7579576	7579887	.	+	.	Parent=Os10t0206800-01
Chr10	irgsp1_rep	mRNA	7574319	7579827	.	+	.	ID=Os10t0206800-02;Name=Os10t0206800-02;Locus_id=Os10g0206800;Oryzabase Gene Symbol Synonym(s)=OsFRDL2;Oryzabase Gene Name Synonym(s)=FRD3-like protein 2;Note=Similar to predicted protein.;Transcript_evidence=AK072077 (DDBJ%2C Best hit);ORF_evidence=D2CYA4 (UniProt);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);NIAS_FLcDNA=J013116K24;Oryzabase=11140;Expression=AK072077;TENOR=Os10t0206800-02;KEGG=Os10t0206800-02
Chr10	irgsp1_rep	five_prime_UTR	7574319	7574320	.	+	.	Parent=Os10t0206800-02
Chr10	irgsp1_rep	CDS	7574321	7574486	.	+	0	Parent=Os10t0206800-02
Chr10	irgsp1_rep	CDS	7575678	7575884	.	+	2	Parent=Os10t0206800-02
Chr10	irgsp1_rep	CDS	7575966	7576153	.	+	2	Parent=Os10t0206800-02
Chr10	irgsp1_rep	CDS	7576555	7576690	.	+	0	Parent=Os10t0206800-02
Chr10	irgsp1_rep	CDS	7577035	7577131	.	+	2	Parent=Os10t0206800-02
Chr10	irgsp1_rep	CDS	7577240	7577309	.	+	1	Parent=Os10t0206800-02
Chr10	irgsp1_rep	three_prime_UTR	7577310	7577362	.	+	.	Parent=Os10t0206800-02
Chr10	irgsp1_rep	three_prime_UTR	7577706	7577869	.	+	.	Parent=Os10t0206800-02
Chr10	irgsp1_rep	three_prime_UTR	7578091	7578279	.	+	.	Parent=Os10t0206800-02
Chr10	irgsp1_rep	three_prime_UTR	7578467	7578561	.	+	.	Parent=Os10t0206800-02
Chr10	irgsp1_rep	three_prime_UTR	7578651	7578773	.	+	.	Parent=Os10t0206800-02
Chr10	irgsp1_rep	three_prime_UTR	7579497	7579827	.	+	.	Parent=Os10t0206800-02
Chr10	irgsp1_rep	mRNA	7574362	7577870	.	-	.	ID=Os10t0207101-00;Name=Os10t0207101-00;Locus_id=Os10g0207101;Note=Hypothetical protein.;Transcript_evidence=tplb0059f16 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0207101-00
Chr10	irgsp1_rep	five_prime_UTR	7577682	7577870	.	-	.	Parent=Os10t0207101-00
Chr10	irgsp1_rep	five_prime_UTR	7577032	7577223	.	-	.	Parent=Os10t0207101-00
Chr10	irgsp1_rep	five_prime_UTR	7576580	7576687	.	-	.	Parent=Os10t0207101-00
Chr10	irgsp1_rep	five_prime_UTR	7576045	7576177	.	-	.	Parent=Os10t0207101-00
Chr10	irgsp1_rep	CDS	7575963	7576044	.	-	0	Parent=Os10t0207101-00
Chr10	irgsp1_rep	CDS	7575724	7575875	.	-	2	Parent=Os10t0207101-00
Chr10	irgsp1_rep	three_prime_UTR	7575690	7575723	.	-	.	Parent=Os10t0207101-00
Chr10	irgsp1_rep	three_prime_UTR	7574362	7574496	.	-	.	Parent=Os10t0207101-00
Chr10	irgsp1_rep	mRNA	7616145	7616777	.	+	.	ID=Os10t0207400-01;Name=Os10t0207400-01;Locus_id=Os10g0207400;Note=Conserved hypothetical protein.;Transcript_evidence=AK120253 (DDBJ%2C Best hit);ORF_evidence=B8BG48 (UniProt);NIAS_FLcDNA=J013045J10;Expression=AK120253;TENOR=Os10t0207400-01;KEGG=Os10t0207400-01
Chr10	irgsp1_rep	five_prime_UTR	7616145	7616244	.	+	.	Parent=Os10t0207400-01
Chr10	irgsp1_rep	CDS	7616245	7616496	.	+	0	Parent=Os10t0207400-01
Chr10	irgsp1_rep	three_prime_UTR	7616497	7616777	.	+	.	Parent=Os10t0207400-01
Chr10	irgsp1_rep	mRNA	7624066	7625061	.	-	.	ID=Os10t0207500-01;Name=Os10t0207500-01;Locus_id=Os10g0207500;Oryzabase Gene Symbol Synonym(s)=OsTDL1B%2C TDL1B;Oryzabase Gene Name Synonym(s)=TPD1-like 1B;Note=Similar to TPD1.;Transcript_evidence=AK064393 (DDBJ%2C Best hit),AK121594 (DDBJ%2C Best hit);ORF_evidence=NP_001152714.1 (RefSeq);NIAS_FLcDNA=002-108-G01,J033038J08;Oryzabase=22390;TENOR=Os10t0207500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	7624962	7625061	.	-	.	Parent=Os10t0207500-01
Chr10	irgsp1_rep	CDS	7624889	7624961	.	-	0	Parent=Os10t0207500-01
Chr10	irgsp1_rep	CDS	7624728	7624805	.	-	2	Parent=Os10t0207500-01
Chr10	irgsp1_rep	CDS	7624256	7624614	.	-	2	Parent=Os10t0207500-01
Chr10	irgsp1_rep	three_prime_UTR	7624066	7624255	.	-	.	Parent=Os10t0207500-01
Chr10	irgsp1_rep	mRNA	7642884	7644043	.	-	.	ID=Os10t0207700-01;Name=Os10t0207700-01;Locus_id=Os10g0207700;Note=EGF-like region%2C conserved site domain containing protein.;Transcript_evidence=AK108231 (DDBJ%2C Best hit);ORF_evidence=Q8S6V3 (UniProt);NIAS_FLcDNA=002-140-G03;Expression=AK108231;TENOR=Os10t0207700-01;KEGG=Os10t0207700-01
Chr10	irgsp1_rep	five_prime_UTR	7644037	7644043	.	-	.	Parent=Os10t0207700-01
Chr10	irgsp1_rep	CDS	7643974	7644036	.	-	0	Parent=Os10t0207700-01
Chr10	irgsp1_rep	CDS	7643749	7643830	.	-	0	Parent=Os10t0207700-01
Chr10	irgsp1_rep	CDS	7643102	7643520	.	-	2	Parent=Os10t0207700-01
Chr10	irgsp1_rep	three_prime_UTR	7642884	7643101	.	-	.	Parent=Os10t0207700-01
Chr10	irgsp1_rep	mRNA	7674670	7677294	.	-	.	ID=Os10t0208200-00;Name=Os10t0208200-00;Locus_id=Os10g0208200;Note=Similar to ras-like.;Transcript_evidence=FP098016 (DDBJ);ORF_evidence=NP_001105743.1 (RefSeq);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: intracellular protein transport (GO:0006886),Biological Process: nucleocytoplasmic transport (GO:0006913),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Cellular Component: membrane (GO:0016020),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Ran GTPase (IPR002041),Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C Ras type (IPR020849);TENOR=Os10t0208200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	7677249	7677294	.	-	.	Parent=Os10t0208200-00
Chr10	irgsp1_rep	CDS	7677197	7677248	.	-	0	Parent=Os10t0208200-00
Chr10	irgsp1_rep	CDS	7676924	7677063	.	-	2	Parent=Os10t0208200-00
Chr10	irgsp1_rep	CDS	7675894	7675976	.	-	0	Parent=Os10t0208200-00
Chr10	irgsp1_rep	CDS	7675589	7675796	.	-	1	Parent=Os10t0208200-00
Chr10	irgsp1_rep	CDS	7675426	7675494	.	-	0	Parent=Os10t0208200-00
Chr10	irgsp1_rep	CDS	7674727	7674813	.	-	0	Parent=Os10t0208200-00
Chr10	irgsp1_rep	three_prime_UTR	7674670	7674726	.	-	.	Parent=Os10t0208200-00
Chr10	irgsp1_rep	mRNA	7675939	7677475	.	+	.	ID=Os10t0208250-01;Name=Os10t0208250-01;Locus_id=Os10g0208250;Note=Non-protein coding transcript.;Transcript_evidence=AK288764 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090067G06;TENOR=Os10t0208250-01
Chr10	irgsp1_rep	exon	7675939	7677475	.	+	.	Parent=Os10t0208250-01
Chr10	irgsp1_rep	mRNA	7685223	7691734	.	+	.	ID=Os10t0208500-01;Name=Os10t0208500-01;Locus_id=Os10g0208500;Note=Hypothetical protein.;Transcript_evidence=AK065698 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013038F03;TENOR=Os10t0208500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	7685223	7685474	.	+	.	Parent=Os10t0208500-01
Chr10	irgsp1_rep	five_prime_UTR	7687514	7690601	.	+	.	Parent=Os10t0208500-01
Chr10	irgsp1_rep	CDS	7690602	7690958	.	+	0	Parent=Os10t0208500-01
Chr10	irgsp1_rep	three_prime_UTR	7690959	7691734	.	+	.	Parent=Os10t0208500-01
Chr10	irgsp1_rep	mRNA	7685225	7694516	.	+	.	ID=Os10t0208500-02;Name=Os10t0208500-02;Locus_id=Os10g0208500;Note=Oxoglutarate/iron-dependent oxygenase domain containing protein.;Transcript_evidence=AK120453 (DDBJ%2C Best hit);ORF_evidence=B8BG52 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=J013103P13;Expression=AK120453;TENOR=Os10t0208500-02;KEGG=Os10t0208500-02
Chr10	irgsp1_rep	five_prime_UTR	7685225	7685474	.	+	.	Parent=Os10t0208500-02
Chr10	irgsp1_rep	five_prime_UTR	7687514	7692813	.	+	.	Parent=Os10t0208500-02
Chr10	irgsp1_rep	CDS	7692814	7693077	.	+	0	Parent=Os10t0208500-02
Chr10	irgsp1_rep	CDS	7693176	7694309	.	+	0	Parent=Os10t0208500-02
Chr10	irgsp1_rep	three_prime_UTR	7694310	7694516	.	+	.	Parent=Os10t0208500-02
Chr10	irgsp1_rep	mRNA	7693420	7696842	.	+	.	ID=Os10t0208500-03;Name=Os10t0208500-03;Locus_id=Os10g0208500;Note=Hypothetical conserved gene.;Transcript_evidence=AK060372 (DDBJ%2C Best hit);ORF_evidence=Q8S6U1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=001-009-B08;Expression=AK060372;TENOR=Os10t0208500-03;KEGG=Os10t0208500-03
Chr10	irgsp1_rep	five_prime_UTR	7693420	7693421	.	+	.	Parent=Os10t0208500-03
Chr10	irgsp1_rep	CDS	7693422	7694309	.	+	0	Parent=Os10t0208500-03
Chr10	irgsp1_rep	three_prime_UTR	7694310	7694323	.	+	.	Parent=Os10t0208500-03
Chr10	irgsp1_rep	three_prime_UTR	7695426	7695545	.	+	.	Parent=Os10t0208500-03
Chr10	irgsp1_rep	three_prime_UTR	7695657	7695746	.	+	.	Parent=Os10t0208500-03
Chr10	irgsp1_rep	three_prime_UTR	7696356	7696842	.	+	.	Parent=Os10t0208500-03
Chr10	irgsp1_rep	mRNA	7696095	7702427	.	-	.	ID=Os10t0208600-01;Name=Os10t0208600-01;Locus_id=Os10g0208600;Note=Pollen Ole e 1 allergen/extensin domain containing protein.;Transcript_evidence=AK068630 (DDBJ%2C Best hit);ORF_evidence=B8BG53 (UniProt);InterPro=Pollen Ole e 1 allergen/extensin (IPR006041);NIAS_FLcDNA=J013155I02;Expression=AK068630;TENOR=Os10t0208600-01;KEGG=Os10t0208600-01
Chr10	irgsp1_rep	five_prime_UTR	7702351	7702427	.	-	.	Parent=Os10t0208600-01
Chr10	irgsp1_rep	CDS	7702086	7702350	.	-	0	Parent=Os10t0208600-01
Chr10	irgsp1_rep	CDS	7696299	7696627	.	-	2	Parent=Os10t0208600-01
Chr10	irgsp1_rep	three_prime_UTR	7696095	7696298	.	-	.	Parent=Os10t0208600-01
Chr10	irgsp1_rep	mRNA	7738227	7740738	.	-	.	ID=Os10t0208900-00;Name=Os10t0208900-00;Locus_id=Os10g0208900;Note=Hypothetical conserved gene.;Transcript_evidence=AK109751 (DDBJ%2C Secondary hit);ORF_evidence=Q53NH3 (UniProt);Expression=AK109751;TENOR=Os10t0208900-00;KEGG=Os10t0208900-00
Chr10	irgsp1_rep	five_prime_UTR	7740734	7740738	.	-	.	Parent=Os10t0208900-00
Chr10	irgsp1_rep	CDS	7739840	7740733	.	-	0	Parent=Os10t0208900-00
Chr10	irgsp1_rep	three_prime_UTR	7739545	7739839	.	-	.	Parent=Os10t0208900-00
Chr10	irgsp1_rep	three_prime_UTR	7738227	7738870	.	-	.	Parent=Os10t0208900-00
Chr10	irgsp1_rep	mRNA	7761015	7765411	.	-	.	ID=Os10t0209300-00;Name=Os10t0209300-00;Locus_id=Os10g0209300;Note=Similar to HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 containing protein%2C expressed.;Transcript_evidence=AY332469 (DDBJ%2C Secondary hit);ORF_evidence=Q109K4 (UniProt);InterPro=HAD-like domain (IPR023214);Expression=AY332469;TENOR=Os10t0209300-00;KEGG=Os10t0209300-00 (EC:2.7.1.26)
Chr10	irgsp1_rep	five_prime_UTR	7765350	7765411	.	-	.	Parent=Os10t0209300-00
Chr10	irgsp1_rep	CDS	7765274	7765349	.	-	0	Parent=Os10t0209300-00
Chr10	irgsp1_rep	CDS	7764986	7765170	.	-	2	Parent=Os10t0209300-00
Chr10	irgsp1_rep	three_prime_UTR	7764983	7764985	.	-	.	Parent=Os10t0209300-00
Chr10	irgsp1_rep	three_prime_UTR	7762805	7762935	.	-	.	Parent=Os10t0209300-00
Chr10	irgsp1_rep	three_prime_UTR	7762624	7762693	.	-	.	Parent=Os10t0209300-00
Chr10	irgsp1_rep	three_prime_UTR	7762422	7762487	.	-	.	Parent=Os10t0209300-00
Chr10	irgsp1_rep	three_prime_UTR	7762105	7762258	.	-	.	Parent=Os10t0209300-00
Chr10	irgsp1_rep	three_prime_UTR	7761928	7762023	.	-	.	Parent=Os10t0209300-00
Chr10	irgsp1_rep	three_prime_UTR	7761558	7761709	.	-	.	Parent=Os10t0209300-00
Chr10	irgsp1_rep	three_prime_UTR	7761396	7761479	.	-	.	Parent=Os10t0209300-00
Chr10	irgsp1_rep	three_prime_UTR	7761015	7761300	.	-	.	Parent=Os10t0209300-00
Chr10	irgsp1_rep	mRNA	7766632	7766934	.	+	.	ID=Os10t0209433-00;Name=Os10t0209433-00;Locus_id=Os10g0209433;Note=Hypothetical conserved gene.;Transcript_evidence=EU947142 (DDBJ);ORF_evidence=Q8S6Y8 (UniProt);TENOR=Os10t0209433-00;KEGG=Os10t0209433-00
Chr10	irgsp1_rep	CDS	7766632	7766934	.	+	0	Parent=Os10t0209433-00
Chr10	irgsp1_rep	mRNA	7767193	7767775	.	+	.	ID=Os10t0209566-01;Name=Os10t0209566-01;Locus_id=Os10g0209566;Note=Conserved hypothetical protein.;Transcript_evidence=AK287698 (DDBJ%2C Best hit);ORF_evidence=Q8LN58 (UniProt);NIAS_FLcDNA=J065130D08;TENOR=Os10t0209566-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	7767193	7767194	.	+	.	Parent=Os10t0209566-01
Chr10	irgsp1_rep	CDS	7767195	7767707	.	+	0	Parent=Os10t0209566-01
Chr10	irgsp1_rep	three_prime_UTR	7767708	7767775	.	+	.	Parent=Os10t0209566-01
Chr10	irgsp1_rep	mRNA	7779293	7781354	.	+	.	ID=Os10t0209700-01;Name=Os10t0209700-01;Locus_id=Os10g0209700;CGSNL Gene Symbol=HMP42;CGSNL Gene Name=HEAVY METAL-ASSOCIATED PROTEIN 42;Oryzabase Gene Symbol Synonym(s)=OsHMP42;Oryzabase Gene Name Synonym(s)=Heavy metal-associated protein 42;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK070579 (DDBJ%2C Best hit);ORF_evidence=Q8S6Y3 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);NIAS_FLcDNA=J023060P21;Oryzabase=23557;Expression=AK070579;TENOR=Os10t0209700-01;KEGG=Os10t0209700-01
Chr10	irgsp1_rep	five_prime_UTR	7779293	7779395	.	+	.	Parent=Os10t0209700-01
Chr10	irgsp1_rep	CDS	7779396	7779404	.	+	0	Parent=Os10t0209700-01
Chr10	irgsp1_rep	CDS	7779642	7779795	.	+	0	Parent=Os10t0209700-01
Chr10	irgsp1_rep	CDS	7779924	7780123	.	+	2	Parent=Os10t0209700-01
Chr10	irgsp1_rep	CDS	7780348	7780438	.	+	0	Parent=Os10t0209700-01
Chr10	irgsp1_rep	CDS	7780741	7781084	.	+	2	Parent=Os10t0209700-01
Chr10	irgsp1_rep	three_prime_UTR	7781085	7781354	.	+	.	Parent=Os10t0209700-01
Chr10	irgsp1_rep	mRNA	7813356	7817132	.	-	.	ID=Os10t0210500-01;Name=Os10t0210500-01;Locus_id=Os10g0210500;CGSNL Gene Symbol=UMAMIT15;CGSNL Gene Name=USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 15;Oryzabase Gene Symbol Synonym(s)=OsUMAMIT15;Oryzabase Gene Name Synonym(s)=Usually Multiple Acids Move In and out Transporter 15;Note=Protein of unknown function DUF6%2C transmembrane domain containing protein.;Transcript_evidence=AK062163 (DDBJ%2C Best hit);ORF_evidence=NP_001148990.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=001-046-B04;Oryzabase=21383;Expression=AK062163;TENOR=Os10t0210500-01;KEGG=Os10t0210500-01
Chr10	irgsp1_rep	five_prime_UTR	7817037	7817132	.	-	.	Parent=Os10t0210500-01
Chr10	irgsp1_rep	CDS	7816846	7817036	.	-	0	Parent=Os10t0210500-01
Chr10	irgsp1_rep	CDS	7815456	7815518	.	-	1	Parent=Os10t0210500-01
Chr10	irgsp1_rep	CDS	7815259	7815375	.	-	1	Parent=Os10t0210500-01
Chr10	irgsp1_rep	CDS	7814302	7814542	.	-	1	Parent=Os10t0210500-01
Chr10	irgsp1_rep	CDS	7814061	7814219	.	-	0	Parent=Os10t0210500-01
Chr10	irgsp1_rep	CDS	7813778	7813929	.	-	0	Parent=Os10t0210500-01
Chr10	irgsp1_rep	CDS	7813507	7813678	.	-	1	Parent=Os10t0210500-01
Chr10	irgsp1_rep	three_prime_UTR	7813356	7813506	.	-	.	Parent=Os10t0210500-01
Chr10	irgsp1_rep	mRNA	7810692	7817118	.	-	.	ID=Os10t0210500-02;Name=Os10t0210500-02;Locus_id=Os10g0210500;CGSNL Gene Symbol=UMAMIT15;CGSNL Gene Name=USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 15;Oryzabase Gene Symbol Synonym(s)=OsUMAMIT15;Oryzabase Gene Name Synonym(s)=Usually Multiple Acids Move In and out Transporter 15;Note=Protein of unknown function DUF6%2C transmembrane domain containing protein.;Transcript_evidence=AK067578 (DDBJ%2C Best hit);ORF_evidence=NP_001148990.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=J013110M15;Oryzabase=21383;Expression=AK067578;TENOR=Os10t0210500-02;KEGG=Os10t0210500-02
Chr10	irgsp1_rep	five_prime_UTR	7817037	7817118	.	-	.	Parent=Os10t0210500-02
Chr10	irgsp1_rep	CDS	7816846	7817036	.	-	0	Parent=Os10t0210500-02
Chr10	irgsp1_rep	CDS	7815456	7815518	.	-	1	Parent=Os10t0210500-02
Chr10	irgsp1_rep	CDS	7815259	7815375	.	-	1	Parent=Os10t0210500-02
Chr10	irgsp1_rep	CDS	7814302	7814542	.	-	1	Parent=Os10t0210500-02
Chr10	irgsp1_rep	CDS	7814061	7814219	.	-	0	Parent=Os10t0210500-02
Chr10	irgsp1_rep	CDS	7813778	7813929	.	-	0	Parent=Os10t0210500-02
Chr10	irgsp1_rep	CDS	7813507	7813678	.	-	1	Parent=Os10t0210500-02
Chr10	irgsp1_rep	three_prime_UTR	7812245	7813506	.	-	.	Parent=Os10t0210500-02
Chr10	irgsp1_rep	three_prime_UTR	7810692	7811120	.	-	.	Parent=Os10t0210500-02
Chr10	irgsp1_rep	mRNA	8079173	8089516	.	-	.	ID=Os10t0211900-00;Name=Os10t0211900-00;Locus_id=Os10g0211900;Note=Conserved hypothetical protein.;Transcript_evidence=BT086064 (DDBJ);ORF_evidence=Q8RU18 (UniProt);TENOR=Os10t0211900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	8089429	8089516	.	-	.	Parent=Os10t0211900-00
Chr10	irgsp1_rep	CDS	8089176	8089428	.	-	0	Parent=Os10t0211900-00
Chr10	irgsp1_rep	CDS	8079361	8079554	.	-	2	Parent=Os10t0211900-00
Chr10	irgsp1_rep	three_prime_UTR	8079173	8079360	.	-	.	Parent=Os10t0211900-00
Chr10	irgsp1_rep	mRNA	8070371	8074802	.	+	.	ID=Os10t0212100-01;Name=Os10t0212100-01;Locus_id=Os10g0212100;Note=Conserved hypothetical protein.;Transcript_evidence=AK099670 (DDBJ%2C Best hit);ORF_evidence=Q65X61 (UniProt);NIAS_FLcDNA=J013068G04;Expression=AK099670;TENOR=Os10t0212100-01;KEGG=Os10t0212100-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	8070371	8071422	.	+	.	Parent=Os10t0212100-01
Chr10	irgsp1_rep	five_prime_UTR	8071524	8071580	.	+	.	Parent=Os10t0212100-01
Chr10	irgsp1_rep	five_prime_UTR	8072433	8072514	.	+	.	Parent=Os10t0212100-01
Chr10	irgsp1_rep	five_prime_UTR	8072616	8073305	.	+	.	Parent=Os10t0212100-01
Chr10	irgsp1_rep	CDS	8073306	8073586	.	+	0	Parent=Os10t0212100-01
Chr10	irgsp1_rep	CDS	8074257	8074290	.	+	1	Parent=Os10t0212100-01
Chr10	irgsp1_rep	three_prime_UTR	8074291	8074370	.	+	.	Parent=Os10t0212100-01
Chr10	irgsp1_rep	three_prime_UTR	8074471	8074802	.	+	.	Parent=Os10t0212100-01
Chr10	irgsp1_rep	mRNA	8035237	8038115	.	-	.	ID=Os10t0213100-01;Name=Os10t0213100-01;Locus_id=Os10g0213100;Note=Similar to Gamma-aminobutyrate transaminase subunit isozyme 3 (EC 2.6.1.19).;Transcript_evidence=AK243662 (DDBJ%2C Best hit);ORF_evidence=NP_001148620.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: transaminase activity (GO:0008483),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferase class-III (IPR005814),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421);NIAS_FLcDNA=J100089E22;TENOR=Os10t0213100-01;KEGG=Os10t0213100-01 (EC:2.6.1.19);B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	8037707	8038115	.	-	.	Parent=Os10t0213100-01
Chr10	irgsp1_rep	five_prime_UTR	8036966	8037012	.	-	.	Parent=Os10t0213100-01
Chr10	irgsp1_rep	CDS	8036158	8036232	.	-	0	Parent=Os10t0213100-01
Chr10	irgsp1_rep	CDS	8035518	8035523	.	-	0	Parent=Os10t0213100-01
Chr10	irgsp1_rep	three_prime_UTR	8035237	8035517	.	-	.	Parent=Os10t0213100-01
Chr10	irgsp1_rep	mRNA	8000579	8001288	.	-	.	ID=Os10t0213700-01;Name=Os10t0213700-01;Locus_id=Os10g0213700;Note=Similar to P-166-4_1 (Fragment).;Transcript_evidence=AK063872 (DDBJ%2C Best hit);ORF_evidence=Q4VDD8 (UniProt);NIAS_FLcDNA=001-122-E10;Expression=AK063872;TENOR=Os10t0213700-01;KEGG=Os10t0213700-01
Chr10	irgsp1_rep	five_prime_UTR	8001238	8001288	.	-	.	Parent=Os10t0213700-01
Chr10	irgsp1_rep	CDS	8000746	8001237	.	-	0	Parent=Os10t0213700-01
Chr10	irgsp1_rep	three_prime_UTR	8000579	8000745	.	-	.	Parent=Os10t0213700-01
Chr10	irgsp1_rep	mRNA	7993384	7995891	.	-	.	ID=Os10t0213800-01;Name=Os10t0213800-01;Locus_id=Os10g0213800;Note=Hypothetical conserved gene.;Transcript_evidence=AK242906 (DDBJ%2C Best hit);ORF_evidence=Q33A47 (UniProt);NIAS_FLcDNA=J090082F19;TENOR=Os10t0213800-01;KEGG=Os10t0213800-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	7995399	7995891	.	-	.	Parent=Os10t0213800-01
Chr10	irgsp1_rep	CDS	7994811	7995398	.	-	0	Parent=Os10t0213800-01
Chr10	irgsp1_rep	three_prime_UTR	7994589	7994810	.	-	.	Parent=Os10t0213800-01
Chr10	irgsp1_rep	three_prime_UTR	7993384	7993743	.	-	.	Parent=Os10t0213800-01
Chr10	irgsp1_rep	mRNA	7982716	7986068	.	+	.	ID=Os10t0213966-01;Name=Os10t0213966-01;Locus_id=Os10g0213966;Note=Non-protein coding transcript.;Transcript_evidence=AK288444 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090034K15;TENOR=Os10t0213966-01
Chr10	irgsp1_rep	exon	7982716	7986068	.	+	.	Parent=Os10t0213966-01
Chr10	irgsp1_rep	mRNA	7969321	7969587	.	+	.	ID=Os10t0214132-00;Name=Os10t0214132-00;Locus_id=Os10g0214132;Note=Similar to ribosomal protein L2.;Transcript_evidence=X62070 (DDBJ);ORF_evidence=NP_039427.2 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: large ribosomal subunit (GO:0015934),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735),Molecular Function: transferase activity (GO:0016740);InterPro=Ribosomal protein L2 (IPR002171),Ribosomal protein L2%2C bacterial-type (IPR005880),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),Ribosomal Proteins L2%2C RNA binding domain (IPR022666);TENOR=Os10t0214132-00;KEGG=Os10t0214132-00
Chr10	irgsp1_rep	CDS	7969321	7969587	.	+	0	Parent=Os10t0214132-00
Chr10	irgsp1_rep	mRNA	7959351	7959905	.	+	.	ID=Os10t0214300-01;Name=Os10t0214300-01;Locus_id=Os10g0214300;Note=Non-protein coding transcript.;Transcript_evidence=AK064164 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-103-G10;TENOR=Os10t0214300-01
Chr10	irgsp1_rep	exon	7959351	7959905	.	+	.	Parent=Os10t0214300-01
Chr10	irgsp1_rep	mRNA	7949676	7959665	.	-	.	ID=Os10t0214400-01;Name=Os10t0214400-01;Locus_id=Os10g0214400;Note=GTP-binding signal recognition particle SRP54%2C G-domain containing protein.;Transcript_evidence=AK109197 (DDBJ%2C Best hit);ORF_evidence=A2Q3T8 (UniProt);NIAS_FLcDNA=002-156-B10;TENOR=Os10t0214400-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	7959585	7959665	.	-	.	Parent=Os10t0214400-01
Chr10	irgsp1_rep	CDS	7959466	7959584	.	-	0	Parent=Os10t0214400-01
Chr10	irgsp1_rep	CDS	7957111	7957311	.	-	1	Parent=Os10t0214400-01
Chr10	irgsp1_rep	CDS	7949676	7949851	.	-	1	Parent=Os10t0214400-01
Chr10	irgsp1_rep	mRNA	8092866	8099474	.	-	.	ID=Os10t0254720-01;Name=Os10t0254720-01;Locus_id=Os10g0254720;Note=Conserved hypothetical protein.;Transcript_evidence=AK071067 (DDBJ%2C Best hit);ORF_evidence=B9FZZ0 (UniProt);NIAS_FLcDNA=J023081G06;TENOR=Os10t0254720-01;KEGG=Os10t0254720-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	8099399	8099474	.	-	.	Parent=Os10t0254720-01
Chr10	irgsp1_rep	CDS	8099073	8099398	.	-	0	Parent=Os10t0254720-01
Chr10	irgsp1_rep	CDS	8098547	8098940	.	-	1	Parent=Os10t0254720-01
Chr10	irgsp1_rep	three_prime_UTR	8098278	8098546	.	-	.	Parent=Os10t0254720-01
Chr10	irgsp1_rep	three_prime_UTR	8092866	8093420	.	-	.	Parent=Os10t0254720-01
Chr10	irgsp1_rep	mRNA	8193814	8201070	.	+	.	ID=Os10t0315400-01;Name=Os10t0315400-01;Locus_id=Os10g0315400;Oryzabase Gene Symbol Synonym(s)=SIP28;Oryzabase Gene Name Synonym(s)=SKIP interacting protein 28%2C SKIPa-interacting protein 28%2C SKIPa-interacting protein 28;Note=Similar to SKIP interacting protein 28 (Fragment).;Transcript_evidence=AK069438 (DDBJ%2C Best hit);ORF_evidence=B8Q8B4 (UniProt);NIAS_FLcDNA=J023022N13;Oryzabase=9960;Expression=AK069438;TENOR=Os10t0315400-01;KEGG=Os10t0315400-01
Chr10	irgsp1_rep	five_prime_UTR	8193814	8194145	.	+	.	Parent=Os10t0315400-01
Chr10	irgsp1_rep	five_prime_UTR	8194454	8194664	.	+	.	Parent=Os10t0315400-01
Chr10	irgsp1_rep	five_prime_UTR	8195771	8197636	.	+	.	Parent=Os10t0315400-01
Chr10	irgsp1_rep	CDS	8197637	8197816	.	+	0	Parent=Os10t0315400-01
Chr10	irgsp1_rep	CDS	8197909	8198025	.	+	0	Parent=Os10t0315400-01
Chr10	irgsp1_rep	CDS	8199167	8199346	.	+	0	Parent=Os10t0315400-01
Chr10	irgsp1_rep	CDS	8199591	8199637	.	+	0	Parent=Os10t0315400-01
Chr10	irgsp1_rep	CDS	8200415	8200748	.	+	1	Parent=Os10t0315400-01
Chr10	irgsp1_rep	three_prime_UTR	8200749	8201070	.	+	.	Parent=Os10t0315400-01
Chr10	irgsp1_rep	mRNA	8193925	8200775	.	-	.	ID=Os10t0315900-00;Name=Os10t0315900-00;Locus_id=Os10g0315900;Note=Hypothetical protein.;Transcript_evidence=tplb0052g05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0315900-00
Chr10	irgsp1_rep	five_prime_UTR	8200427	8200775	.	-	.	Parent=Os10t0315900-00
Chr10	irgsp1_rep	five_prime_UTR	8199634	8199644	.	-	.	Parent=Os10t0315900-00
Chr10	irgsp1_rep	CDS	8199577	8199633	.	-	0	Parent=Os10t0315900-00
Chr10	irgsp1_rep	CDS	8199163	8199329	.	-	0	Parent=Os10t0315900-00
Chr10	irgsp1_rep	CDS	8197937	8198021	.	-	1	Parent=Os10t0315900-00
Chr10	irgsp1_rep	three_prime_UTR	8197908	8197936	.	-	.	Parent=Os10t0315900-00
Chr10	irgsp1_rep	three_prime_UTR	8197634	8197815	.	-	.	Parent=Os10t0315900-00
Chr10	irgsp1_rep	three_prime_UTR	8195656	8196471	.	-	.	Parent=Os10t0315900-00
Chr10	irgsp1_rep	three_prime_UTR	8194470	8194878	.	-	.	Parent=Os10t0315900-00
Chr10	irgsp1_rep	three_prime_UTR	8193925	8194159	.	-	.	Parent=Os10t0315900-00
Chr10	irgsp1_rep	mRNA	8295638	8309027	.	-	.	ID=Os10t0316400-01;Name=Os10t0316400-01;Locus_id=Os10g0316400;Note=Conserved hypothetical protein.;Transcript_evidence=AK065772 (DDBJ%2C Best hit);ORF_evidence=Q94I00 (UniProt);NIAS_FLcDNA=J013036D09;Expression=AK065772;TENOR=Os10t0316400-01;KEGG=Os10t0316400-01
Chr10	irgsp1_rep	five_prime_UTR	8308892	8309027	.	-	.	Parent=Os10t0316400-01
Chr10	irgsp1_rep	five_prime_UTR	8305431	8305561	.	-	.	Parent=Os10t0316400-01
Chr10	irgsp1_rep	CDS	8303262	8305430	.	-	0	Parent=Os10t0316400-01
Chr10	irgsp1_rep	CDS	8303020	8303144	.	-	0	Parent=Os10t0316400-01
Chr10	irgsp1_rep	CDS	8300715	8302331	.	-	1	Parent=Os10t0316400-01
Chr10	irgsp1_rep	CDS	8300542	8300587	.	-	1	Parent=Os10t0316400-01
Chr10	irgsp1_rep	CDS	8300206	8300453	.	-	0	Parent=Os10t0316400-01
Chr10	irgsp1_rep	CDS	8300000	8300101	.	-	1	Parent=Os10t0316400-01
Chr10	irgsp1_rep	CDS	8295975	8296203	.	-	1	Parent=Os10t0316400-01
Chr10	irgsp1_rep	three_prime_UTR	8295638	8295974	.	-	.	Parent=Os10t0316400-01
Chr10	irgsp1_rep	mRNA	8299611	8308961	.	-	.	ID=Os10t0316400-02;Name=Os10t0316400-02;Locus_id=Os10g0316400;Note=Hypothetical conserved gene.;Transcript_evidence=AK102018 (DDBJ%2C Best hit);ORF_evidence=Q33A23 (UniProt);NIAS_FLcDNA=J033080G09;Expression=AK102018;TENOR=Os10t0316400-02;KEGG=Os10t0316400-02
Chr10	irgsp1_rep	five_prime_UTR	8308892	8308961	.	-	.	Parent=Os10t0316400-02
Chr10	irgsp1_rep	five_prime_UTR	8305431	8305561	.	-	.	Parent=Os10t0316400-02
Chr10	irgsp1_rep	CDS	8303262	8305430	.	-	0	Parent=Os10t0316400-02
Chr10	irgsp1_rep	CDS	8303020	8303144	.	-	0	Parent=Os10t0316400-02
Chr10	irgsp1_rep	CDS	8300715	8302331	.	-	1	Parent=Os10t0316400-02
Chr10	irgsp1_rep	CDS	8300542	8300587	.	-	1	Parent=Os10t0316400-02
Chr10	irgsp1_rep	CDS	8300206	8300453	.	-	0	Parent=Os10t0316400-02
Chr10	irgsp1_rep	CDS	8300000	8300101	.	-	1	Parent=Os10t0316400-02
Chr10	irgsp1_rep	CDS	8299865	8299901	.	-	1	Parent=Os10t0316400-02
Chr10	irgsp1_rep	three_prime_UTR	8299611	8299864	.	-	.	Parent=Os10t0316400-02
Chr10	irgsp1_rep	mRNA	8462195	8464904	.	+	.	ID=Os10t0317300-01;Name=Os10t0317300-01;Locus_id=Os10g0317300;Note=Conserved hypothetical protein.;Transcript_evidence=AK069957 (DDBJ%2C Best hit);ORF_evidence=Q33A10 (UniProt);NIAS_FLcDNA=J023037E09;TENOR=Os10t0317300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	8462195	8462627	.	+	.	Parent=Os10t0317300-01
Chr10	irgsp1_rep	CDS	8462628	8462864	.	+	0	Parent=Os10t0317300-01
Chr10	irgsp1_rep	three_prime_UTR	8462865	8462924	.	+	.	Parent=Os10t0317300-01
Chr10	irgsp1_rep	three_prime_UTR	8463009	8463090	.	+	.	Parent=Os10t0317300-01
Chr10	irgsp1_rep	three_prime_UTR	8463574	8463818	.	+	.	Parent=Os10t0317300-01
Chr10	irgsp1_rep	three_prime_UTR	8463930	8464003	.	+	.	Parent=Os10t0317300-01
Chr10	irgsp1_rep	three_prime_UTR	8464533	8464609	.	+	.	Parent=Os10t0317300-01
Chr10	irgsp1_rep	three_prime_UTR	8464702	8464904	.	+	.	Parent=Os10t0317300-01
Chr10	irgsp1_rep	mRNA	8494248	8504218	.	+	.	ID=Os10t0317900-01;Name=Os10t0317900-01;Locus_id=Os10g0317900;RAP-DB Gene Symbol Synonym(s)=CYP75B4%2C OsCYP75B4;RAP-DB Gene Name Synonym(s)=P-450 75B4%2C CytoChrome P450 75B4;CGSNL Gene Symbol=CYP75B4;CGSNL Gene Name=P-450 75B4;Oryzabase Gene Symbol Synonym(s)=OsCYP75B4%2C OsC5'H%2C C5'H;Oryzabase Gene Name Synonym(s)=CytoChrome P450 75B4;Note=Chrysoeriol 5'-Hydroxylase%2C Flavonoid B-ring hydroxylase%2C Tricin biosynthesis;Transcript_evidence=AK070442;ORF_evidence=Q8LM92;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J023052E10;Manual Curation=August 28%2C 2015;Literature_PMID=26082402;Oryzabase=20534;TENOR=Os10t0317900-01;KEGG=Os10t0317900-01 (EC:1.14.13.21)
Chr10	irgsp1_rep	five_prime_UTR	8494248	8494367	.	+	.	Parent=Os10t0317900-01
Chr10	irgsp1_rep	CDS	8494368	8495330	.	+	0	Parent=Os10t0317900-01
Chr10	irgsp1_rep	CDS	8503289	8503933	.	+	0	Parent=Os10t0317900-01
Chr10	irgsp1_rep	three_prime_UTR	8503934	8504218	.	+	.	Parent=Os10t0317900-01
Chr10	irgsp1_rep	mRNA	8494987	8504235	.	+	.	ID=Os10t0317900-02;Name=Os10t0317900-02;Locus_id=Os10g0317900;CGSNL Gene Symbol=CYP75B4;CGSNL Gene Name=P-450 75B4;Oryzabase Gene Symbol Synonym(s)=OsCYP75B4%2C OsC5'H%2C C5'H;Oryzabase Gene Name Synonym(s)=CytoChrome P450 75B4;Note=Similar to Flavonoid 3-monooxygenase.;Transcript_evidence=AK104477 (DDBJ%2C Best hit),AK061112 (DDBJ%2C Best hit);ORF_evidence=B6TML3 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=006-301-F04,006-207-D06;Oryzabase=20534;Expression=AK104477;TENOR=Os10t0317900-02;KEGG=Os10t0317900-02
Chr10	irgsp1_rep	five_prime_UTR	8494987	8494988	.	+	.	Parent=Os10t0317900-02
Chr10	irgsp1_rep	CDS	8494989	8495330	.	+	0	Parent=Os10t0317900-02
Chr10	irgsp1_rep	CDS	8503289	8503933	.	+	0	Parent=Os10t0317900-02
Chr10	irgsp1_rep	three_prime_UTR	8503934	8504235	.	+	.	Parent=Os10t0317900-02
Chr10	irgsp1_rep	mRNA	8503950	8504238	.	+	.	ID=Os10t0317900-03;Name=Os10t0317900-03;Locus_id=Os10g0317900;CGSNL Gene Symbol=CYP75B4;CGSNL Gene Name=P-450 75B4;Oryzabase Gene Symbol Synonym(s)=OsCYP75B4%2C OsC5'H%2C C5'H;Oryzabase Gene Name Synonym(s)=CytoChrome P450 75B4;Note=Non-protein coding transcript.;Transcript_evidence=AK060703 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-030-G06;Oryzabase=20534;TENOR=Os10t0317900-03
Chr10	irgsp1_rep	exon	8503950	8504238	.	+	.	Parent=Os10t0317900-03
Chr10	irgsp1_rep	mRNA	8503301	8503842	.	-	.	ID=Os10t0317950-00;Name=Os10t0317950-00;Locus_id=Os10g0317950;Note=Hypothetical protein.;Transcript_evidence=EU942896 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0317950-00
Chr10	irgsp1_rep	five_prime_UTR	8503768	8503842	.	-	.	Parent=Os10t0317950-00
Chr10	irgsp1_rep	CDS	8503546	8503767	.	-	0	Parent=Os10t0317950-00
Chr10	irgsp1_rep	three_prime_UTR	8503301	8503545	.	-	.	Parent=Os10t0317950-00
Chr10	irgsp1_rep	mRNA	8506423	8509627	.	+	.	ID=Os10t0318000-01;Name=Os10t0318000-01;Locus_id=Os10g0318000;Note=Conserved hypothetical protein.;Transcript_evidence=AK068235 (DDBJ%2C Best hit);ORF_evidence=Q33A05 (UniProt);NIAS_FLcDNA=J013149C10;TENOR=Os10t0318000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	8506423	8507053	.	+	.	Parent=Os10t0318000-01
Chr10	irgsp1_rep	five_prime_UTR	8507147	8507221	.	+	.	Parent=Os10t0318000-01
Chr10	irgsp1_rep	five_prime_UTR	8507328	8507633	.	+	.	Parent=Os10t0318000-01
Chr10	irgsp1_rep	CDS	8507634	8507888	.	+	0	Parent=Os10t0318000-01
Chr10	irgsp1_rep	three_prime_UTR	8507889	8509627	.	+	.	Parent=Os10t0318000-01
Chr10	irgsp1_rep	mRNA	8559025	8566013	.	-	.	ID=Os10t0318700-00;Name=Os10t0318700-00;Locus_id=Os10g0318700;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001176074.1 (RefSeq);TENOR=Os10t0318700-00
Chr10	irgsp1_rep	CDS	8565954	8566013	.	-	0	Parent=Os10t0318700-00
Chr10	irgsp1_rep	CDS	8565715	8565777	.	-	0	Parent=Os10t0318700-00
Chr10	irgsp1_rep	CDS	8565552	8565635	.	-	0	Parent=Os10t0318700-00
Chr10	irgsp1_rep	CDS	8559025	8559036	.	-	0	Parent=Os10t0318700-00
Chr10	irgsp1_rep	mRNA	8570834	8572512	.	+	.	ID=Os10t0318900-01;Name=Os10t0318900-01;Locus_id=Os10g0318900;Note=Similar to ER6 protein (Fragment).;Transcript_evidence=AK111448 (DDBJ%2C Best hit);ORF_evidence=NP_001148900.1 (RefSeq);NIAS_FLcDNA=002-183-B07;Expression=AK111448;TENOR=Os10t0318900-01;KEGG=Os10t0318900-01
Chr10	irgsp1_rep	five_prime_UTR	8570834	8570835	.	+	.	Parent=Os10t0318900-01
Chr10	irgsp1_rep	CDS	8570836	8571465	.	+	0	Parent=Os10t0318900-01
Chr10	irgsp1_rep	three_prime_UTR	8571466	8572512	.	+	.	Parent=Os10t0318900-01
Chr10	irgsp1_rep	mRNA	8660446	8662837	.	+	.	ID=Os10t0320001-00;Name=Os10t0320001-00;Locus_id=Os10g0320001;Note=Hypothetical gene.;Transcript_evidence=CT835731 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os10t0320001-00;KEGG=Os10t0320001-00
Chr10	irgsp1_rep	five_prime_UTR	8660446	8660446	.	+	.	Parent=Os10t0320001-00
Chr10	irgsp1_rep	CDS	8660447	8660683	.	+	0	Parent=Os10t0320001-00
Chr10	irgsp1_rep	three_prime_UTR	8660684	8660778	.	+	.	Parent=Os10t0320001-00
Chr10	irgsp1_rep	three_prime_UTR	8661822	8661876	.	+	.	Parent=Os10t0320001-00
Chr10	irgsp1_rep	three_prime_UTR	8662506	8662837	.	+	.	Parent=Os10t0320001-00
Chr10	irgsp1_rep	mRNA	8679311	8681266	.	+	.	ID=Os10t0320100-01;Name=Os10t0320100-01;Locus_id=Os10g0320100;RAP-DB Gene Symbol Synonym(s)=CYP75B3%2C F3'H;RAP-DB Gene Name Synonym(s)=flavonoid 3'-hydroxylase;CGSNL Gene Symbol=F3'H;CGSNL Gene Name=FLAVONOID 3'-HYDROXYLASE;Oryzabase Gene Symbol Synonym(s)=OsF3'H%2C OsCYP75B3%2C CYP75B3;Oryzabase Gene Name Synonym(s)=sativa flavonoid 3'-hydroxylase%2C Flavanone 3'-hydroxylase%2C P-450 75B3%2C CytoChrome P450 75B3%2C flavonoid 3'-monooxygenase;Note=Flavonoid 3'-hydroxylase%2C CytoChrome P450 75B3%2C Flavone C-glycosides biosynthesis;Transcript_evidence=AK064736;ORF_evidence=Q7G602;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 superfamily (IPR036396),CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=002-120-C08;Manual Curation=May 10%2C 2019;Literature_PMID=30883799;Oryzabase=8314;Expression=AK064736;TENOR=Os10t0320100-01;KEGG=Os10t0320100-01 (EC:1.14.13.21)
Chr10	irgsp1_rep	five_prime_UTR	8679311	8679356	.	+	.	Parent=Os10t0320100-01
Chr10	irgsp1_rep	CDS	8679357	8680295	.	+	0	Parent=Os10t0320100-01
Chr10	irgsp1_rep	CDS	8680389	8681030	.	+	0	Parent=Os10t0320100-01
Chr10	irgsp1_rep	three_prime_UTR	8681031	8681266	.	+	.	Parent=Os10t0320100-01
Chr10	irgsp1_rep	mRNA	8680387	8681006	.	-	.	ID=Os10t0320201-00;Name=Os10t0320201-00;Locus_id=Os10g0320201;Note=Hypothetical protein.;Transcript_evidence=EU942896 (DDBJ);ORF_evidence=longestORF;Oryzabase=23289;TENOR=Os10t0320201-00
Chr10	irgsp1_rep	five_prime_UTR	8680940	8681006	.	-	.	Parent=Os10t0320201-00
Chr10	irgsp1_rep	CDS	8680646	8680939	.	-	0	Parent=Os10t0320201-00
Chr10	irgsp1_rep	three_prime_UTR	8680387	8680645	.	-	.	Parent=Os10t0320201-00
Chr10	irgsp1_rep	mRNA	8682868	8687984	.	-	.	ID=Os10t0320300-00;Name=Os10t0320300-00;Locus_id=Os10g0320300;Note=Non-protein coding transcript.;Transcript_evidence=BT069649 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0320300-00
Chr10	irgsp1_rep	exon	8687670	8687984	.	-	.	Parent=Os10t0320300-00
Chr10	irgsp1_rep	exon	8682868	8683325	.	-	.	Parent=Os10t0320300-00
Chr10	irgsp1_rep	mRNA	8691901	8697228	.	+	.	ID=Os10t0320400-01;Name=Os10t0320400-01;Locus_id=Os10g0320400;Note=Similar to ATP synthase gamma chain%2C mitochondrial precursor (EC 3.6.3.14).;Transcript_evidence=AK072694 (DDBJ%2C Best hit);ORF_evidence=B8BG64 (UniProt);GO=Biological Process: ATP synthesis coupled proton transport (GO:0015986),Cellular Component: proton-transporting ATP synthase complex%2C catalytic core F(1) (GO:0045261),Molecular Function: hydrogen ion transporting ATP synthase activity%2C rotational mechanism (GO:0046933),Molecular Function: proton-transporting ATPase activity%2C rotational mechanism (GO:0046961);InterPro=ATPase%2C F1 complex%2C gamma subunit (IPR000131),ATPase%2C F1 complex%2C gamma subunit conserved site (IPR023632),ATPase%2C F1 complex%2C gamma subunit domain (IPR023633);NIAS_FLcDNA=J023135E20;Expression=AK072694;TENOR=Os10t0320400-01;KEGG=Os10t0320400-01 (EC:3.6.3.14)
Chr10	irgsp1_rep	five_prime_UTR	8691901	8691959	.	+	.	Parent=Os10t0320400-01
Chr10	irgsp1_rep	CDS	8691960	8692063	.	+	0	Parent=Os10t0320400-01
Chr10	irgsp1_rep	CDS	8692912	8692955	.	+	1	Parent=Os10t0320400-01
Chr10	irgsp1_rep	CDS	8693059	8693211	.	+	2	Parent=Os10t0320400-01
Chr10	irgsp1_rep	CDS	8693803	8693916	.	+	2	Parent=Os10t0320400-01
Chr10	irgsp1_rep	CDS	8693996	8694123	.	+	2	Parent=Os10t0320400-01
Chr10	irgsp1_rep	CDS	8695826	8695948	.	+	0	Parent=Os10t0320400-01
Chr10	irgsp1_rep	CDS	8696041	8696157	.	+	0	Parent=Os10t0320400-01
Chr10	irgsp1_rep	CDS	8696330	8696451	.	+	0	Parent=Os10t0320400-01
Chr10	irgsp1_rep	CDS	8696786	8696855	.	+	1	Parent=Os10t0320400-01
Chr10	irgsp1_rep	three_prime_UTR	8696856	8697228	.	+	.	Parent=Os10t0320400-01
Chr10	irgsp1_rep	mRNA	8786980	8796460	.	-	.	ID=Os10t0321700-01;Name=Os10t0321700-01;Locus_id=Os10g0321700;Oryzabase Gene Symbol Synonym(s)=RBP-159;Oryzabase Gene Name Synonym(s)=RNA-binding RBP-159;Note=Similar to Ribonucleoprotein like protein.;Transcript_evidence=AK072673 (DDBJ%2C Best hit);ORF_evidence=Q40436 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023136G11;Oryzabase=22089;Expression=AK072673;TENOR=Os10t0321700-01;KEGG=Os10t0321700-01
Chr10	irgsp1_rep	five_prime_UTR	8796173	8796460	.	-	.	Parent=Os10t0321700-01
Chr10	irgsp1_rep	CDS	8796064	8796172	.	-	0	Parent=Os10t0321700-01
Chr10	irgsp1_rep	CDS	8795863	8795931	.	-	2	Parent=Os10t0321700-01
Chr10	irgsp1_rep	CDS	8795649	8795755	.	-	2	Parent=Os10t0321700-01
Chr10	irgsp1_rep	CDS	8787388	8788056	.	-	0	Parent=Os10t0321700-01
Chr10	irgsp1_rep	three_prime_UTR	8786980	8787387	.	-	.	Parent=Os10t0321700-01
Chr10	irgsp1_rep	mRNA	8793428	8795648	.	-	.	ID=Os10t0322032-01;Name=Os10t0322032-01;Locus_id=Os10g0322032;Note=Conserved hypothetical protein.;Transcript_evidence=AK066810 (DDBJ%2C Best hit);ORF_evidence=Q6UUH9 (UniProt);NIAS_FLcDNA=J013081P08;TENOR=Os10t0322032-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	8794559	8795648	.	-	.	Parent=Os10t0322032-01
Chr10	irgsp1_rep	CDS	8794301	8794558	.	-	0	Parent=Os10t0322032-01
Chr10	irgsp1_rep	three_prime_UTR	8793428	8794300	.	-	.	Parent=Os10t0322032-01
Chr10	irgsp1_rep	mRNA	8837124	8838148	.	-	.	ID=Os10t0322300-01;Name=Os10t0322300-01;Locus_id=Os10g0322300;Note=Conserved hypothetical protein.;Transcript_evidence=AK109422 (DDBJ%2C Best hit);ORF_evidence=B8BG70 (UniProt);NIAS_FLcDNA=006-305-E11;TENOR=Os10t0322300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	8838033	8838148	.	-	.	Parent=Os10t0322300-01
Chr10	irgsp1_rep	CDS	8837451	8838032	.	-	0	Parent=Os10t0322300-01
Chr10	irgsp1_rep	three_prime_UTR	8837124	8837450	.	-	.	Parent=Os10t0322300-01
Chr10	irgsp1_rep	mRNA	8846840	8847352	.	+	.	ID=Os10t0322600-00;Name=Os10t0322600-00;Locus_id=Os10g0322600;Note=Hypothetical gene.;Transcript_evidence=CT835812 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os10t0322600-00
Chr10	irgsp1_rep	five_prime_UTR	8846840	8846991	.	+	.	Parent=Os10t0322600-00
Chr10	irgsp1_rep	CDS	8846992	8847352	.	+	0	Parent=Os10t0322600-00
Chr10	irgsp1_rep	mRNA	8891489	8910642	.	+	.	ID=Os10t0323000-01;Name=Os10t0323000-01;Locus_id=Os10g0323000;Note=Conserved hypothetical protein.;Transcript_evidence=AK110835 (DDBJ%2C Best hit);ORF_evidence=Q7XFU9 (UniProt);NIAS_FLcDNA=002-172-A11;Expression=AK110835;TENOR=Os10t0323000-01;KEGG=Os10t0323000-01
Chr10	irgsp1_rep	five_prime_UTR	8891489	8891993	.	+	.	Parent=Os10t0323000-01
Chr10	irgsp1_rep	five_prime_UTR	8892093	8892139	.	+	.	Parent=Os10t0323000-01
Chr10	irgsp1_rep	five_prime_UTR	8893724	8893849	.	+	.	Parent=Os10t0323000-01
Chr10	irgsp1_rep	five_prime_UTR	8893956	8894035	.	+	.	Parent=Os10t0323000-01
Chr10	irgsp1_rep	five_prime_UTR	8908056	8908176	.	+	.	Parent=Os10t0323000-01
Chr10	irgsp1_rep	CDS	8908177	8908178	.	+	0	Parent=Os10t0323000-01
Chr10	irgsp1_rep	CDS	8908288	8908411	.	+	1	Parent=Os10t0323000-01
Chr10	irgsp1_rep	CDS	8908930	8908996	.	+	0	Parent=Os10t0323000-01
Chr10	irgsp1_rep	CDS	8909074	8909147	.	+	2	Parent=Os10t0323000-01
Chr10	irgsp1_rep	three_prime_UTR	8909148	8909386	.	+	.	Parent=Os10t0323000-01
Chr10	irgsp1_rep	three_prime_UTR	8909537	8909599	.	+	.	Parent=Os10t0323000-01
Chr10	irgsp1_rep	three_prime_UTR	8909922	8910085	.	+	.	Parent=Os10t0323000-01
Chr10	irgsp1_rep	three_prime_UTR	8910158	8910642	.	+	.	Parent=Os10t0323000-01
Chr10	irgsp1_rep	mRNA	8920265	8926170	.	+	.	ID=Os10t0323500-01;Name=Os10t0323500-01;Locus_id=Os10g0323500;CGSNL Gene Symbol=BGLU34;CGSNL Gene Name=BETA-GLUCOSIDASE 34;Oryzabase Gene Symbol Synonym(s)=Os10bglu34%2C Os10Bglu34;Oryzabase Gene Name Synonym(s)=beta-glucosidase 34;Note=Similar to Beta-glucosidase.;Transcript_evidence=AK071372 (DDBJ%2C Best hit);ORF_evidence=Q339X2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 1%2C active site (IPR018120);NIAS_FLcDNA=J023094F17;Oryzabase=12107;Expression=AK071372;TENOR=Os10t0323500-01;KEGG=Os10t0323500-01
Chr10	irgsp1_rep	five_prime_UTR	8920265	8920304	.	+	.	Parent=Os10t0323500-01
Chr10	irgsp1_rep	CDS	8920305	8920460	.	+	0	Parent=Os10t0323500-01
Chr10	irgsp1_rep	CDS	8922411	8922477	.	+	0	Parent=Os10t0323500-01
Chr10	irgsp1_rep	CDS	8923033	8923091	.	+	2	Parent=Os10t0323500-01
Chr10	irgsp1_rep	CDS	8923203	8923278	.	+	0	Parent=Os10t0323500-01
Chr10	irgsp1_rep	CDS	8923466	8923537	.	+	2	Parent=Os10t0323500-01
Chr10	irgsp1_rep	CDS	8923674	8923761	.	+	2	Parent=Os10t0323500-01
Chr10	irgsp1_rep	CDS	8923837	8924092	.	+	1	Parent=Os10t0323500-01
Chr10	irgsp1_rep	CDS	8924282	8924397	.	+	0	Parent=Os10t0323500-01
Chr10	irgsp1_rep	CDS	8924595	8924818	.	+	1	Parent=Os10t0323500-01
Chr10	irgsp1_rep	CDS	8925033	8925064	.	+	2	Parent=Os10t0323500-01
Chr10	irgsp1_rep	CDS	8925230	8925331	.	+	0	Parent=Os10t0323500-01
Chr10	irgsp1_rep	CDS	8925528	8925637	.	+	0	Parent=Os10t0323500-01
Chr10	irgsp1_rep	CDS	8925731	8925905	.	+	1	Parent=Os10t0323500-01
Chr10	irgsp1_rep	three_prime_UTR	8925906	8926170	.	+	.	Parent=Os10t0323500-01
Chr10	irgsp1_rep	mRNA	8927907	8929012	.	+	.	ID=Os10t0323600-01;Name=Os10t0323600-01;Locus_id=Os10g0323600;CGSNL Gene Symbol=PRF1;CGSNL Gene Name=PROFILIN 1;Oryzabase Gene Symbol Synonym(s)=OsPRF1;Oryzabase Gene Name Synonym(s)=Profilin-1%2C Profilin 1;Note=Similar to Profilin A.;Transcript_evidence=AK070595 (DDBJ%2C Best hit);ORF_evidence=A3C3I5 (UniProt);GO=Biological Process: cytoskeleton organization (GO:0007010),Biological Process: actin cytoskeleton organization (GO:0030036),Cellular Component: actin cytoskeleton (GO:0015629),Molecular Function: actin binding (GO:0003779);InterPro=Profilin/allergen (IPR002097),Profilin%2C plant (IPR005455);NIAS_FLcDNA=J023058I07;Oryzabase=21773;Expression=AK070595;TENOR=Os10t0323600-01;KEGG=Os10t0323600-01
Chr10	irgsp1_rep	five_prime_UTR	8927907	8928022	.	+	.	Parent=Os10t0323600-01
Chr10	irgsp1_rep	CDS	8928023	8928145	.	+	0	Parent=Os10t0323600-01
Chr10	irgsp1_rep	CDS	8928249	8928386	.	+	0	Parent=Os10t0323600-01
Chr10	irgsp1_rep	CDS	8928511	8928645	.	+	0	Parent=Os10t0323600-01
Chr10	irgsp1_rep	three_prime_UTR	8928646	8929012	.	+	.	Parent=Os10t0323600-01
Chr10	irgsp1_rep	mRNA	8937202	8938316	.	-	.	ID=Os10t0323900-01;Name=Os10t0323900-01;Locus_id=Os10g0323900;Note=Similar to Profilin A.;Transcript_evidence=AK121412 (DDBJ%2C Best hit),AK100089 (DDBJ%2C Best hit);ORF_evidence=A3C3I5 (UniProt);GO=Biological Process: cytoskeleton organization (GO:0007010),Biological Process: actin cytoskeleton organization (GO:0030036),Cellular Component: actin cytoskeleton (GO:0015629),Molecular Function: actin binding (GO:0003779);InterPro=Profilin/allergen (IPR002097),Profilin%2C plant (IPR005455);NIAS_FLcDNA=J023132P11,J023003I11;Expression=AK121412;TENOR=Os10t0323900-01;KEGG=Os10t0323900-01
Chr10	irgsp1_rep	five_prime_UTR	8938214	8938316	.	-	.	Parent=Os10t0323900-01
Chr10	irgsp1_rep	CDS	8938091	8938213	.	-	0	Parent=Os10t0323900-01
Chr10	irgsp1_rep	CDS	8937850	8937987	.	-	0	Parent=Os10t0323900-01
Chr10	irgsp1_rep	CDS	8937582	8937716	.	-	0	Parent=Os10t0323900-01
Chr10	irgsp1_rep	three_prime_UTR	8937202	8937581	.	-	.	Parent=Os10t0323900-01
Chr10	irgsp1_rep	mRNA	8980283	8985013	.	+	.	ID=Os10t0324600-01;Name=Os10t0324600-01;Locus_id=Os10g0324600;Note=Zinc finger%2C C2H2-like domain containing protein.;Transcript_evidence=AK066144 (DDBJ%2C Best hit),AK058350 (DDBJ%2C Best hit);ORF_evidence=Q94HR5 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C U1-type (IPR003604),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J013056E07,001-014-E06;Expression=AK066144;TENOR=Os10t0324600-01;KEGG=Os10t0324600-01
Chr10	irgsp1_rep	five_prime_UTR	8980283	8980326	.	+	.	Parent=Os10t0324600-01
Chr10	irgsp1_rep	CDS	8980327	8980755	.	+	0	Parent=Os10t0324600-01
Chr10	irgsp1_rep	CDS	8984094	8984678	.	+	0	Parent=Os10t0324600-01
Chr10	irgsp1_rep	three_prime_UTR	8984679	8985013	.	+	.	Parent=Os10t0324600-01
Chr10	irgsp1_rep	mRNA	8992297	8996949	.	+	.	ID=Os10t0324900-01;Name=Os10t0324900-01;Locus_id=Os10g0324900;RAP-DB Gene Symbol Synonym(s)=OsLHP1;RAP-DB Gene Name Synonym(s)=LIKE HETEROCHROMATIN PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=LHP1%2C OsLHP1;Oryzabase Gene Name Synonym(s)=LIKE HETEROCHROMATIN PROTEIN 1%2C LHP1 homolog;Note=Homolog of Arabidopsis LHP1;Transcript_evidence=AK243085;ORF_evidence=Q339W7;GO=Cellular Component: nucleus (GO:0005634);InterPro=Chromo-like domain superfamily (IPR016197),Chromo/Chromo shadow domain (IPR000953),Chromo domain (IPR023780),Chromo shadow domain (IPR008251),Chromo domain subgroup (IPR017984),Chromo domain%2C conserved site (IPR023779);NIAS_FLcDNA=J100021I21;Manual Curation=September 26%2C 2017;Literature_PMID=21416255;Oryzabase=19859;TENOR=Os10t0324900-01;KEGG=Os10t0324900-01
Chr10	irgsp1_rep	five_prime_UTR	8992297	8992390	.	+	.	Parent=Os10t0324900-01
Chr10	irgsp1_rep	CDS	8992391	8992773	.	+	0	Parent=Os10t0324900-01
Chr10	irgsp1_rep	CDS	8995324	8995410	.	+	1	Parent=Os10t0324900-01
Chr10	irgsp1_rep	CDS	8995510	8996178	.	+	1	Parent=Os10t0324900-01
Chr10	irgsp1_rep	CDS	8996502	8996562	.	+	1	Parent=Os10t0324900-01
Chr10	irgsp1_rep	CDS	8996643	8996690	.	+	0	Parent=Os10t0324900-01
Chr10	irgsp1_rep	three_prime_UTR	8996691	8996949	.	+	.	Parent=Os10t0324900-01
Chr10	irgsp1_rep	mRNA	9000199	9000426	.	-	.	ID=Os10t0325150-00;Name=Os10t0325150-00;Locus_id=Os10g0325150;Note=Non-protein coding transcript.;Transcript_evidence=CT835814 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os10t0325150-00
Chr10	irgsp1_rep	exon	9000199	9000426	.	-	.	Parent=Os10t0325150-00
Chr10	irgsp1_rep	mRNA	9000705	9002772	.	+	.	ID=Os10t0325400-01;Name=Os10t0325400-01;Locus_id=Os10g0325400;CGSNL Gene Symbol=REM0.2;CGSNL Gene Name=REMORIN 0.2;Oryzabase Gene Symbol Synonym(s)=OsREM0.2;Oryzabase Gene Name Synonym(s)=Remorin 0.2%2C remorin group 0 member 2;Note=Remorin%2C C-terminal domain containing protein.;Transcript_evidence=AK060392 (DDBJ%2C Best hit);ORF_evidence=A3C3J2 (UniProt);InterPro=Remorin%2C C-terminal (IPR005516);NIAS_FLcDNA=001-010-A10;Oryzabase=20268;TENOR=Os10t0325400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	9000705	9000762	.	+	0	Parent=Os10t0325400-01
Chr10	irgsp1_rep	CDS	9001035	9001124	.	+	2	Parent=Os10t0325400-01
Chr10	irgsp1_rep	CDS	9001352	9001654	.	+	2	Parent=Os10t0325400-01
Chr10	irgsp1_rep	CDS	9001761	9002220	.	+	2	Parent=Os10t0325400-01
Chr10	irgsp1_rep	CDS	9002310	9002391	.	+	1	Parent=Os10t0325400-01
Chr10	irgsp1_rep	CDS	9002505	9002699	.	+	0	Parent=Os10t0325400-01
Chr10	irgsp1_rep	three_prime_UTR	9002700	9002772	.	+	.	Parent=Os10t0325400-01
Chr10	irgsp1_rep	mRNA	9041969	9057315	.	-	.	ID=Os10t0325750-00;Name=Os10t0325750-00;Locus_id=Os10g0325750;Note=Hypothetical protein.;Transcript_evidence=tplb0044f04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0325750-00
Chr10	irgsp1_rep	five_prime_UTR	9056319	9057315	.	-	.	Parent=Os10t0325750-00
Chr10	irgsp1_rep	five_prime_UTR	9056069	9056230	.	-	.	Parent=Os10t0325750-00
Chr10	irgsp1_rep	five_prime_UTR	9042432	9042861	.	-	.	Parent=Os10t0325750-00
Chr10	irgsp1_rep	CDS	9042135	9042431	.	-	0	Parent=Os10t0325750-00
Chr10	irgsp1_rep	three_prime_UTR	9041969	9042134	.	-	.	Parent=Os10t0325750-00
Chr10	irgsp1_rep	mRNA	9041999	9042871	.	+	.	ID=Os10t0326100-00;Name=Os10t0326100-00;Locus_id=Os10g0326100;CGSNL Gene Symbol=WAK113;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 113;Oryzabase Gene Symbol Synonym(s)=OsWAK113;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q10A72 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021),Molecular Function: protein serine/threonine kinase activity (GO:0004674);InterPro=Wall-associated kinase (IPR013695);Oryzabase=8030;TENOR=Os10t0326100-00
Chr10	irgsp1_rep	CDS	9041999	9042871	.	+	0	Parent=Os10t0326100-00
Chr10	irgsp1_rep	mRNA	9056301	9057476	.	+	.	ID=Os10t0326200-00;Name=Os10t0326200-00;Locus_id=Os10g0326200;CGSNL Gene Symbol=WAK114;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 114;Oryzabase Gene Symbol Synonym(s)=OsWAK114;Note=Similar to Protein kinase domain containing protein.;Transcript_evidence=AK364262 (DDBJ);ORF_evidence=Q339W2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=8031;TENOR=Os10t0326200-00;KEGG=Os10t0326200-00
Chr10	irgsp1_rep	CDS	9056301	9057476	.	+	0	Parent=Os10t0326200-00
Chr10	irgsp1_rep	mRNA	9062760	9064406	.	-	.	ID=Os10t0326400-01;Name=Os10t0326400-01;Locus_id=Os10g0326400;Oryzabase Gene Symbol Synonym(s)=OsFbox545%2C Os_F0535;Oryzabase Gene Name Synonym(s)=F-box protein 545;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK107248 (DDBJ%2C Best hit);ORF_evidence=Q8S779 (UniProt);NIAS_FLcDNA=002-125-F12;Oryzabase=17314;Expression=AK107248;TENOR=Os10t0326400-01;KEGG=Os10t0326400-01
Chr10	irgsp1_rep	five_prime_UTR	9064356	9064406	.	-	.	Parent=Os10t0326400-01
Chr10	irgsp1_rep	CDS	9062925	9064355	.	-	0	Parent=Os10t0326400-01
Chr10	irgsp1_rep	three_prime_UTR	9062760	9062924	.	-	.	Parent=Os10t0326400-01
Chr10	irgsp1_rep	mRNA	9078440	9080094	.	+	.	ID=Os10t0326800-01;Name=Os10t0326800-01;Locus_id=Os10g0326800;Oryzabase Gene Symbol Synonym(s)=OsFbox546%2C Os_F0513;Oryzabase Gene Name Synonym(s)=F-box protein 546;Note=Conserved hypothetical protein.;Transcript_evidence=AK063471 (DDBJ%2C Best hit);ORF_evidence=B8BG82 (UniProt);NIAS_FLcDNA=001-116-A07;Oryzabase=17315;TENOR=Os10t0326800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	9078440	9078652	.	+	.	Parent=Os10t0326800-01
Chr10	irgsp1_rep	CDS	9078653	9078743	.	+	0	Parent=Os10t0326800-01
Chr10	irgsp1_rep	CDS	9078899	9079929	.	+	2	Parent=Os10t0326800-01
Chr10	irgsp1_rep	three_prime_UTR	9079930	9080094	.	+	.	Parent=Os10t0326800-01
Chr10	irgsp1_rep	mRNA	9088337	9090418	.	-	.	ID=Os10t0326900-00;Name=Os10t0326900-00;Locus_id=Os10g0326900;Note=Similar to Protein kinase domain containing protein.;Transcript_evidence=BT062568 (DDBJ);ORF_evidence=Q7XFR9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os10t0326900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	9090272	9090418	.	-	0	Parent=Os10t0326900-00
Chr10	irgsp1_rep	CDS	9089981	9090191	.	-	0	Parent=Os10t0326900-00
Chr10	irgsp1_rep	CDS	9089395	9089632	.	-	2	Parent=Os10t0326900-00
Chr10	irgsp1_rep	CDS	9088761	9088914	.	-	1	Parent=Os10t0326900-00
Chr10	irgsp1_rep	CDS	9088337	9088657	.	-	0	Parent=Os10t0326900-00
Chr10	irgsp1_rep	mRNA	9101768	9104973	.	-	.	ID=Os10t0327000-00;Name=Os10t0327000-00;Locus_id=Os10g0327000;Note=Similar to Protein kinase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XFR9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Gnk2-homologous domain (IPR002902),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os10t0327000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	9104097	9104973	.	-	0	Parent=Os10t0327000-00
Chr10	irgsp1_rep	CDS	9103257	9103381	.	-	2	Parent=Os10t0327000-00
Chr10	irgsp1_rep	CDS	9102958	9103168	.	-	0	Parent=Os10t0327000-00
Chr10	irgsp1_rep	CDS	9102550	9102787	.	-	2	Parent=Os10t0327000-00
Chr10	irgsp1_rep	CDS	9102183	9102336	.	-	1	Parent=Os10t0327000-00
Chr10	irgsp1_rep	CDS	9101768	9102085	.	-	0	Parent=Os10t0327000-00
Chr10	irgsp1_rep	mRNA	9093611	9094289	.	+	.	ID=Os10t0327050-00;Name=Os10t0327050-00;Locus_id=Os10g0327050;Note=Hypothetical protein.;Transcript_evidence=EU959795 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0327050-00
Chr10	irgsp1_rep	five_prime_UTR	9093611	9093611	.	+	.	Parent=Os10t0327050-00
Chr10	irgsp1_rep	CDS	9093612	9094289	.	+	0	Parent=Os10t0327050-00
Chr10	irgsp1_rep	mRNA	9102177	9102802	.	+	.	ID=Os10t0327100-00;Name=Os10t0327100-00;Locus_id=Os10g0327100;Note=Non-protein coding transcript.;Transcript_evidence=EU949024 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0327100-00
Chr10	irgsp1_rep	exon	9102177	9102362	.	+	.	Parent=Os10t0327100-00
Chr10	irgsp1_rep	exon	9102497	9102802	.	+	.	Parent=Os10t0327100-00
Chr10	irgsp1_rep	mRNA	9104158	9104863	.	+	.	ID=Os10t0327201-00;Name=Os10t0327201-00;Locus_id=Os10g0327201;Note=Hypothetical protein.;Transcript_evidence=EU959795 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0327201-00
Chr10	irgsp1_rep	CDS	9104158	9104863	.	+	0	Parent=Os10t0327201-00
Chr10	irgsp1_rep	mRNA	9120535	9126497	.	-	.	ID=Os10t0327300-01;Name=Os10t0327300-01;Locus_id=Os10g0327300;Note=Similar to Phosphatidate cytidylyltransferase (EC 2.7.7.41).;Transcript_evidence=AK106742 (DDBJ%2C Best hit);ORF_evidence=C5X955 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: phosphatidate cytidylyltransferase activity (GO:0004605),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Phosphatidate cytidylyltransferase (IPR000374),Phosphatidate cytidylyltransferase%2C eukaryota (IPR016720);NIAS_FLcDNA=002-115-B05;Expression=AK106742;TENOR=Os10t0327300-01;KEGG=Os10t0327300-01 (EC:2.7.7.41)
Chr10	irgsp1_rep	five_prime_UTR	9126333	9126497	.	-	.	Parent=Os10t0327300-01
Chr10	irgsp1_rep	five_prime_UTR	9126230	9126242	.	-	.	Parent=Os10t0327300-01
Chr10	irgsp1_rep	CDS	9126113	9126229	.	-	0	Parent=Os10t0327300-01
Chr10	irgsp1_rep	CDS	9125741	9125994	.	-	0	Parent=Os10t0327300-01
Chr10	irgsp1_rep	CDS	9125502	9125653	.	-	1	Parent=Os10t0327300-01
Chr10	irgsp1_rep	CDS	9124976	9125117	.	-	2	Parent=Os10t0327300-01
Chr10	irgsp1_rep	CDS	9123616	9123772	.	-	1	Parent=Os10t0327300-01
Chr10	irgsp1_rep	CDS	9123034	9123081	.	-	0	Parent=Os10t0327300-01
Chr10	irgsp1_rep	CDS	9121899	9121973	.	-	0	Parent=Os10t0327300-01
Chr10	irgsp1_rep	CDS	9121665	9121793	.	-	0	Parent=Os10t0327300-01
Chr10	irgsp1_rep	CDS	9121538	9121594	.	-	0	Parent=Os10t0327300-01
Chr10	irgsp1_rep	CDS	9121065	9121148	.	-	0	Parent=Os10t0327300-01
Chr10	irgsp1_rep	CDS	9120906	9120983	.	-	0	Parent=Os10t0327300-01
Chr10	irgsp1_rep	three_prime_UTR	9120535	9120905	.	-	.	Parent=Os10t0327300-01
Chr10	irgsp1_rep	mRNA	9120826	9125996	.	+	.	ID=Os10t0327325-00;Name=Os10t0327325-00;Locus_id=Os10g0327325;Note=Hypothetical protein.;Transcript_evidence=tplb0040n22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0327325-00
Chr10	irgsp1_rep	five_prime_UTR	9120826	9120979	.	+	.	Parent=Os10t0327325-00
Chr10	irgsp1_rep	five_prime_UTR	9121062	9121157	.	+	.	Parent=Os10t0327325-00
Chr10	irgsp1_rep	five_prime_UTR	9121618	9121790	.	+	.	Parent=Os10t0327325-00
Chr10	irgsp1_rep	five_prime_UTR	9121885	9121975	.	+	.	Parent=Os10t0327325-00
Chr10	irgsp1_rep	five_prime_UTR	9123564	9123761	.	+	.	Parent=Os10t0327325-00
Chr10	irgsp1_rep	five_prime_UTR	9124967	9125130	.	+	.	Parent=Os10t0327325-00
Chr10	irgsp1_rep	five_prime_UTR	9125515	9125649	.	+	.	Parent=Os10t0327325-00
Chr10	irgsp1_rep	CDS	9125650	9125661	.	+	0	Parent=Os10t0327325-00
Chr10	irgsp1_rep	CDS	9125744	9125996	.	+	0	Parent=Os10t0327325-00
Chr10	irgsp1_rep	mRNA	9158360	9164663	.	+	.	ID=Os10t0327800-01;Name=Os10t0327800-01;Locus_id=Os10g0327800;Note=Conserved hypothetical protein.;Transcript_evidence=AK100836 (DDBJ%2C Best hit);ORF_evidence=Q8S5Z5 (UniProt);NIAS_FLcDNA=J023123E13;Expression=AK100836;TENOR=Os10t0327800-01;KEGG=Os10t0327800-01
Chr10	irgsp1_rep	five_prime_UTR	9158360	9158454	.	+	.	Parent=Os10t0327800-01
Chr10	irgsp1_rep	CDS	9158455	9158693	.	+	0	Parent=Os10t0327800-01
Chr10	irgsp1_rep	CDS	9159321	9159550	.	+	1	Parent=Os10t0327800-01
Chr10	irgsp1_rep	CDS	9160836	9161071	.	+	2	Parent=Os10t0327800-01
Chr10	irgsp1_rep	CDS	9163953	9164516	.	+	0	Parent=Os10t0327800-01
Chr10	irgsp1_rep	three_prime_UTR	9164517	9164663	.	+	.	Parent=Os10t0327800-01
Chr10	irgsp1_rep	mRNA	9170819	9171265	.	+	.	ID=Os10t0328100-00;Name=Os10t0328100-00;Locus_id=Os10g0328100;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001064357.1 (RefSeq);TENOR=Os10t0328100-00;KEGG=Os10t0328100-00
Chr10	irgsp1_rep	CDS	9170819	9171265	.	+	0	Parent=Os10t0328100-00
Chr10	irgsp1_rep	mRNA	9212944	9216458	.	-	.	ID=Os10t0328600-01;Name=Os10t0328600-01;Locus_id=Os10g0328600;Note=Hypothetical protein.;Transcript_evidence=AK109143 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-155-F01;Expression=AK109143;TENOR=Os10t0328600-01;KEGG=Os10t0328600-01
Chr10	irgsp1_rep	five_prime_UTR	9216319	9216458	.	-	.	Parent=Os10t0328600-01
Chr10	irgsp1_rep	five_prime_UTR	9214293	9215223	.	-	.	Parent=Os10t0328600-01
Chr10	irgsp1_rep	CDS	9213123	9214292	.	-	0	Parent=Os10t0328600-01
Chr10	irgsp1_rep	three_prime_UTR	9212944	9213122	.	-	.	Parent=Os10t0328600-01
Chr10	irgsp1_rep	mRNA	9213110	9215332	.	+	.	ID=Os10t0328700-01;Name=Os10t0328700-01;Locus_id=Os10g0328700;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK070180 (DDBJ%2C Best hit);ORF_evidence=A3C3L0 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Cellular Component: intracellular (GO:0005622),Molecular Function: binding (GO:0005488);InterPro=RNA-processing protein%2C HAT helix (IPR003107),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J023047D02;Expression=AK070180;TENOR=Os10t0328700-01;KEGG=Os10t0328700-01
Chr10	irgsp1_rep	five_prime_UTR	9213110	9213131	.	+	.	Parent=Os10t0328700-01
Chr10	irgsp1_rep	CDS	9213132	9215267	.	+	0	Parent=Os10t0328700-01
Chr10	irgsp1_rep	three_prime_UTR	9215268	9215332	.	+	.	Parent=Os10t0328700-01
Chr10	irgsp1_rep	mRNA	9256244	9261327	.	+	.	ID=Os10t0329300-01;Name=Os10t0329300-01;Locus_id=Os10g0329300;Note=Similar to Mevalonate kinase (EC 2.7.1.36) (MK).;Transcript_evidence=AK070755 (DDBJ%2C Best hit);ORF_evidence=B6UAN3 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: isoprenoid biosynthetic process (GO:0008299),Biological Process: phosphorylation (GO:0016310),Cellular Component: cytoplasm (GO:0005737),Molecular Function: mevalonate kinase activity (GO:0004496),Molecular Function: ATP binding (GO:0005524),Molecular Function: kinase activity (GO:0016301),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=GHMP kinase%2C ATP-binding%2C conserved site (IPR006203),GHMP kinase (IPR006204),Mevalonate kinase (IPR006205),Mevalonate/galactokinase (IPR006206),GHMP kinase%2C C-terminal (IPR013750),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=J023063M22;Expression=AK070755;TENOR=Os10t0329300-01;KEGG=Os10t0329300-01 (EC:2.7.1.36)
Chr10	irgsp1_rep	five_prime_UTR	9256244	9256610	.	+	.	Parent=Os10t0329300-01
Chr10	irgsp1_rep	five_prime_UTR	9257298	9257349	.	+	.	Parent=Os10t0329300-01
Chr10	irgsp1_rep	five_prime_UTR	9258022	9258162	.	+	.	Parent=Os10t0329300-01
Chr10	irgsp1_rep	five_prime_UTR	9258731	9258827	.	+	.	Parent=Os10t0329300-01
Chr10	irgsp1_rep	five_prime_UTR	9258902	9258922	.	+	.	Parent=Os10t0329300-01
Chr10	irgsp1_rep	CDS	9258923	9259308	.	+	0	Parent=Os10t0329300-01
Chr10	irgsp1_rep	CDS	9259404	9259669	.	+	1	Parent=Os10t0329300-01
Chr10	irgsp1_rep	CDS	9259976	9260389	.	+	2	Parent=Os10t0329300-01
Chr10	irgsp1_rep	CDS	9260947	9261086	.	+	2	Parent=Os10t0329300-01
Chr10	irgsp1_rep	three_prime_UTR	9261087	9261327	.	+	.	Parent=Os10t0329300-01
Chr10	irgsp1_rep	mRNA	9258727	9261352	.	+	.	ID=Os10t0329300-02;Name=Os10t0329300-02;Locus_id=Os10g0329300;Note=Similar to Mevalonate kinase (EC 2.7.1.36) (MK).;Transcript_evidence=AK060494 (DDBJ%2C Best hit);ORF_evidence=B6UAN3 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: isoprenoid biosynthetic process (GO:0008299),Biological Process: phosphorylation (GO:0016310),Cellular Component: cytoplasm (GO:0005737),Molecular Function: mevalonate kinase activity (GO:0004496),Molecular Function: ATP binding (GO:0005524),Molecular Function: kinase activity (GO:0016301),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=GHMP kinase%2C ATP-binding%2C conserved site (IPR006203),GHMP kinase (IPR006204),Mevalonate kinase (IPR006205),Mevalonate/galactokinase (IPR006206),GHMP kinase%2C C-terminal (IPR013750),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=001-016-D04;Expression=AK060494;TENOR=Os10t0329300-02;KEGG=Os10t0329300-02 (EC:2.7.1.36)
Chr10	irgsp1_rep	five_prime_UTR	9258727	9258922	.	+	.	Parent=Os10t0329300-02
Chr10	irgsp1_rep	CDS	9258923	9259308	.	+	0	Parent=Os10t0329300-02
Chr10	irgsp1_rep	CDS	9259404	9259669	.	+	1	Parent=Os10t0329300-02
Chr10	irgsp1_rep	CDS	9259976	9260389	.	+	2	Parent=Os10t0329300-02
Chr10	irgsp1_rep	CDS	9260947	9261086	.	+	2	Parent=Os10t0329300-02
Chr10	irgsp1_rep	three_prime_UTR	9261087	9261352	.	+	.	Parent=Os10t0329300-02
Chr10	irgsp1_rep	mRNA	9258892	9261262	.	+	.	ID=Os10t0329300-03;Name=Os10t0329300-03;Locus_id=Os10g0329300;Note=Similar to Mevalonate kinase (EC 2.7.1.36) (MK).;Transcript_evidence=AK072179 (DDBJ%2C Best hit);ORF_evidence=B6UAN3 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: isoprenoid biosynthetic process (GO:0008299),Biological Process: phosphorylation (GO:0016310),Cellular Component: cytoplasm (GO:0005737),Molecular Function: mevalonate kinase activity (GO:0004496),Molecular Function: ATP binding (GO:0005524),Molecular Function: kinase activity (GO:0016301),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=GHMP kinase%2C ATP-binding%2C conserved site (IPR006203),GHMP kinase (IPR006204),Mevalonate kinase (IPR006205),Mevalonate/galactokinase (IPR006206),GHMP kinase%2C C-terminal (IPR013750),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=J013140H15;Expression=AK072179;TENOR=Os10t0329300-03;KEGG=Os10t0329300-03 (EC:2.7.1.36)
Chr10	irgsp1_rep	five_prime_UTR	9258892	9258922	.	+	.	Parent=Os10t0329300-03
Chr10	irgsp1_rep	CDS	9258923	9259308	.	+	0	Parent=Os10t0329300-03
Chr10	irgsp1_rep	CDS	9259404	9259669	.	+	1	Parent=Os10t0329300-03
Chr10	irgsp1_rep	CDS	9259976	9260389	.	+	2	Parent=Os10t0329300-03
Chr10	irgsp1_rep	CDS	9260947	9261086	.	+	2	Parent=Os10t0329300-03
Chr10	irgsp1_rep	three_prime_UTR	9261087	9261262	.	+	.	Parent=Os10t0329300-03
Chr10	irgsp1_rep	mRNA	9266950	9270320	.	+	.	ID=Os10t0329400-00;Name=Os10t0329400-00;Locus_id=Os10g0329400;Note=Conserved hypothetical protein.;Transcript_evidence=CT833572 (DDBJ%2C Best hit);ORF_evidence=NP_001176984.1 (RefSeq);TENOR=Os10t0329400-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	9266950	9267124	.	+	.	Parent=Os10t0329400-00
Chr10	irgsp1_rep	CDS	9267125	9267408	.	+	0	Parent=Os10t0329400-00
Chr10	irgsp1_rep	CDS	9268529	9268580	.	+	1	Parent=Os10t0329400-00
Chr10	irgsp1_rep	three_prime_UTR	9268581	9268617	.	+	.	Parent=Os10t0329400-00
Chr10	irgsp1_rep	three_prime_UTR	9269575	9270320	.	+	.	Parent=Os10t0329400-00
Chr10	irgsp1_rep	mRNA	9284772	9285986	.	-	.	ID=Os10t0329900-00;Name=Os10t0329900-00;Locus_id=Os10g0329900;Note=Similar to Protein kinase domain containing protein.;Transcript_evidence=AK357681 (DDBJ);ORF_evidence=Q7XFR9 (UniProt);InterPro=Gnk2-homologous domain (IPR002902);TENOR=Os10t0329900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	9284772	9285986	.	-	0	Parent=Os10t0329900-00
Chr10	irgsp1_rep	mRNA	9315531	9316279	.	+	.	ID=Os10t0330000-01;Name=Os10t0330000-01;Locus_id=Os10g0330000;Note=Conserved hypothetical protein.;Transcript_evidence=AK070152 (DDBJ%2C Best hit),AK071458 (DDBJ%2C Best hit),AK104034 (DDBJ%2C Best hit);ORF_evidence=Q8W5E3 (UniProt);NIAS_FLcDNA=J023043A18,J023092O07,001-020-G07;TENOR=Os10t0330000-01
Chr10	irgsp1_rep	five_prime_UTR	9315531	9315610	.	+	.	Parent=Os10t0330000-01
Chr10	irgsp1_rep	CDS	9315611	9316108	.	+	0	Parent=Os10t0330000-01
Chr10	irgsp1_rep	three_prime_UTR	9316109	9316279	.	+	.	Parent=Os10t0330000-01
Chr10	irgsp1_rep	mRNA	9330650	9336460	.	+	.	ID=Os10t0330300-01;Name=Os10t0330300-01;Locus_id=Os10g0330300;Note=Conserved hypothetical protein.;Transcript_evidence=AK103827 (DDBJ%2C Best hit);ORF_evidence=F2DGC3 (UniProt);NIAS_FLcDNA=J033147N02;TENOR=Os10t0330300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	9330650	9330819	.	+	.	Parent=Os10t0330300-01
Chr10	irgsp1_rep	five_prime_UTR	9332181	9332295	.	+	.	Parent=Os10t0330300-01
Chr10	irgsp1_rep	CDS	9332296	9332508	.	+	0	Parent=Os10t0330300-01
Chr10	irgsp1_rep	CDS	9334902	9335384	.	+	0	Parent=Os10t0330300-01
Chr10	irgsp1_rep	CDS	9335496	9335555	.	+	0	Parent=Os10t0330300-01
Chr10	irgsp1_rep	CDS	9335644	9335649	.	+	0	Parent=Os10t0330300-01
Chr10	irgsp1_rep	three_prime_UTR	9335650	9335708	.	+	.	Parent=Os10t0330300-01
Chr10	irgsp1_rep	three_prime_UTR	9336022	9336460	.	+	.	Parent=Os10t0330300-01
Chr10	irgsp1_rep	mRNA	9337927	9339154	.	+	.	ID=Os10t0330400-01;Name=Os10t0330400-01;Locus_id=Os10g0330400;Note=Protein of unknown function DUF179 family protein.;Transcript_evidence=AK099421 (DDBJ%2C Best hit),AK061323 (DDBJ%2C Best hit),AK105880 (DDBJ%2C Best hit),AK109353 (DDBJ%2C Best hit);ORF_evidence=B6SSQ6 (UniProt);InterPro=Protein of unknown function DUF179 (IPR003774);NIAS_FLcDNA=J013007O07,006-302-F12,001-204-C11,006-205-D03;TENOR=Os10t0330400-01
Chr10	irgsp1_rep	five_prime_UTR	9337927	9337955	.	+	.	Parent=Os10t0330400-01
Chr10	irgsp1_rep	CDS	9337956	9338094	.	+	0	Parent=Os10t0330400-01
Chr10	irgsp1_rep	CDS	9338197	9338948	.	+	2	Parent=Os10t0330400-01
Chr10	irgsp1_rep	three_prime_UTR	9338949	9339154	.	+	.	Parent=Os10t0330400-01
Chr10	irgsp1_rep	mRNA	9349051	9356434	.	+	.	ID=Os10t0330600-01;Name=Os10t0330600-01;Locus_id=Os10g0330600;CGSNL Gene Symbol=BGAL12;CGSNL Gene Name=BETA-GALACTOSIDASE 12;Oryzabase Gene Symbol Synonym(s)=OsBgal12%2C OsBGal12;Oryzabase Gene Name Synonym(s)=Beta-galactosidase 13%2C Lactase 13;Note=Glycoside hydrolase%2C family 35 protein.;Transcript_evidence=AK119350 (DDBJ%2C Best hit);ORF_evidence=B8BG92 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: sugar binding (GO:0005529),Molecular Function: cation binding (GO:0043169);InterPro=D-galactoside/L-rhamnose binding SUEL lectin domain (IPR000922),Glycoside hydrolase%2C family 35 (IPR001944),Galactose-binding domain-like (IPR008979),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 35%2C conserved site (IPR019801);NIAS_FLcDNA=001-131-F02;Oryzabase=8286;Expression=AK119350;TENOR=Os10t0330600-01;KEGG=Os10t0330600-01
Chr10	irgsp1_rep	five_prime_UTR	9349051	9349140	.	+	.	Parent=Os10t0330600-01
Chr10	irgsp1_rep	CDS	9349141	9349320	.	+	0	Parent=Os10t0330600-01
Chr10	irgsp1_rep	CDS	9351115	9351210	.	+	0	Parent=Os10t0330600-01
Chr10	irgsp1_rep	CDS	9352231	9352343	.	+	0	Parent=Os10t0330600-01
Chr10	irgsp1_rep	CDS	9352466	9352532	.	+	1	Parent=Os10t0330600-01
Chr10	irgsp1_rep	CDS	9352634	9352726	.	+	0	Parent=Os10t0330600-01
Chr10	irgsp1_rep	CDS	9352884	9353036	.	+	0	Parent=Os10t0330600-01
Chr10	irgsp1_rep	CDS	9353149	9353237	.	+	0	Parent=Os10t0330600-01
Chr10	irgsp1_rep	CDS	9353364	9353469	.	+	1	Parent=Os10t0330600-01
Chr10	irgsp1_rep	CDS	9353566	9353653	.	+	0	Parent=Os10t0330600-01
Chr10	irgsp1_rep	CDS	9353763	9353881	.	+	2	Parent=Os10t0330600-01
Chr10	irgsp1_rep	CDS	9354014	9354175	.	+	0	Parent=Os10t0330600-01
Chr10	irgsp1_rep	CDS	9354305	9354501	.	+	0	Parent=Os10t0330600-01
Chr10	irgsp1_rep	CDS	9354617	9354705	.	+	1	Parent=Os10t0330600-01
Chr10	irgsp1_rep	CDS	9354797	9354906	.	+	2	Parent=Os10t0330600-01
Chr10	irgsp1_rep	CDS	9355010	9355123	.	+	0	Parent=Os10t0330600-01
Chr10	irgsp1_rep	CDS	9355378	9355485	.	+	0	Parent=Os10t0330600-01
Chr10	irgsp1_rep	CDS	9355570	9356172	.	+	0	Parent=Os10t0330600-01
Chr10	irgsp1_rep	three_prime_UTR	9356173	9356434	.	+	.	Parent=Os10t0330600-01
Chr10	irgsp1_rep	mRNA	9367263	9368108	.	-	.	ID=Os10t0330825-00;Name=Os10t0330825-00;Locus_id=Os10g0330825;Note=Hypothetical protein.;Transcript_evidence=tplb0014h21 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0330825-00
Chr10	irgsp1_rep	five_prime_UTR	9367492	9368108	.	-	.	Parent=Os10t0330825-00
Chr10	irgsp1_rep	CDS	9367263	9367491	.	-	0	Parent=Os10t0330825-00
Chr10	irgsp1_rep	mRNA	9384016	9384570	.	-	.	ID=Os10t0331400-00;Name=Os10t0331400-00;Locus_id=Os10g0331400;Note=Hypothetical conserved gene.;Transcript_evidence=EU974579 (DDBJ);ORF_evidence=Q8LM16 (UniProt);TENOR=Os10t0331400-00;KEGG=Os10t0331400-00
Chr10	irgsp1_rep	CDS	9384016	9384570	.	-	0	Parent=Os10t0331400-00
Chr10	irgsp1_rep	mRNA	9385678	9386782	.	+	.	ID=Os10t0331500-01;Name=Os10t0331500-01;Locus_id=Os10g0331500;Note=Hypothetical protein.;Transcript_evidence=AK060146 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=006-310-B01;Expression=AK060146;TENOR=Os10t0331500-01;KEGG=Os10t0331500-01
Chr10	irgsp1_rep	five_prime_UTR	9385678	9385725	.	+	.	Parent=Os10t0331500-01
Chr10	irgsp1_rep	CDS	9385726	9386586	.	+	0	Parent=Os10t0331500-01
Chr10	irgsp1_rep	three_prime_UTR	9386587	9386782	.	+	.	Parent=Os10t0331500-01
Chr10	irgsp1_rep	mRNA	9385682	9389718	.	-	.	ID=Os10t0331600-00;Name=Os10t0331600-00;Locus_id=Os10g0331600;Note=UDP-glucuronosyl/UDP-glucosyltransferase domain containing protein.;Transcript_evidence=AK370280 (DDBJ);ORF_evidence=B8BG93 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os10t0331600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	9389551	9389718	.	-	.	Parent=Os10t0331600-00
Chr10	irgsp1_rep	CDS	9389398	9389550	.	-	0	Parent=Os10t0331600-00
Chr10	irgsp1_rep	CDS	9389135	9389326	.	-	0	Parent=Os10t0331600-00
Chr10	irgsp1_rep	CDS	9385687	9386637	.	-	0	Parent=Os10t0331600-00
Chr10	irgsp1_rep	three_prime_UTR	9385682	9385686	.	-	.	Parent=Os10t0331600-00
Chr10	irgsp1_rep	mRNA	9393144	9395494	.	+	.	ID=Os10t0331866-00;Name=Os10t0331866-00;Locus_id=Os10g0331866;Note=Conserved hypothetical protein.;Transcript_evidence=BT063798 (DDBJ);ORF_evidence=C0P679 (UniProt);TENOR=Os10t0331866-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	9393144	9394061	.	+	0	Parent=Os10t0331866-00
Chr10	irgsp1_rep	CDS	9394964	9394981	.	+	0	Parent=Os10t0331866-00
Chr10	irgsp1_rep	three_prime_UTR	9394982	9395494	.	+	.	Parent=Os10t0331866-00
Chr10	irgsp1_rep	mRNA	9393215	9395500	.	-	.	ID=Os10t0332000-01;Name=Os10t0332000-01;Locus_id=Os10g0332000;CGSNL Gene Symbol=AM34;CGSNL Gene Name=ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 34;Oryzabase Gene Symbol Synonym(s)=AM34;Note=Arbuscular mycorrhizal specific marker 34.;Transcript_evidence=BT064093 (DDBJ);ORF_evidence=NP_001176085.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);Oryzabase=8194;TENOR=Os10t0332000-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	9394930	9395500	.	-	0	Parent=Os10t0332000-01
Chr10	irgsp1_rep	CDS	9393219	9394126	.	-	2	Parent=Os10t0332000-01
Chr10	irgsp1_rep	three_prime_UTR	9393215	9393218	.	-	.	Parent=Os10t0332000-01
Chr10	irgsp1_rep	mRNA	9399584	9400596	.	-	.	ID=Os10t0332300-00;Name=Os10t0332300-00;Locus_id=Os10g0332300;Note=UDP-glucuronosyl/UDP-glucosyltransferase domain containing protein.;Transcript_evidence=BT035511 (DDBJ);ORF_evidence=B8BG93 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os10t0332300-00
Chr10	irgsp1_rep	CDS	9399742	9400596	.	-	0	Parent=Os10t0332300-00
Chr10	irgsp1_rep	three_prime_UTR	9399584	9399741	.	-	.	Parent=Os10t0332300-00
Chr10	irgsp1_rep	mRNA	9481927	9482596	.	-	.	ID=Os10t0332733-00;Name=Os10t0332733-00;Locus_id=Os10g0332733;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);InterPro=Ribonuclease H1%2C N-terminal (IPR011320);TENOR=Os10t0332733-00
Chr10	irgsp1_rep	five_prime_UTR	9482593	9482596	.	-	.	Parent=Os10t0332733-00
Chr10	irgsp1_rep	CDS	9481927	9482592	.	-	0	Parent=Os10t0332733-00
Chr10	irgsp1_rep	mRNA	9486389	9486450	.	+	.	ID=Os10t0332866-00;Name=Os10t0332866-00;Locus_id=Os10g0332866;Note=Non-protein coding transcript.;Transcript_evidence=EU941912 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0332866-00
Chr10	irgsp1_rep	exon	9486389	9486450	.	+	.	Parent=Os10t0332866-00
Chr10	irgsp1_rep	mRNA	9501547	9503876	.	+	.	ID=Os10t0333000-01;Name=Os10t0333000-01;Locus_id=Os10g0333000;Note=Hypothetical conserved gene.;Transcript_evidence=AK288165 (DDBJ%2C Best hit);ORF_evidence=Q339T2 (UniProt);NIAS_FLcDNA=J090002G12;TENOR=Os10t0333000-01;KEGG=Os10t0333000-01
Chr10	irgsp1_rep	five_prime_UTR	9501547	9501686	.	+	.	Parent=Os10t0333000-01
Chr10	irgsp1_rep	CDS	9501687	9502178	.	+	0	Parent=Os10t0333000-01
Chr10	irgsp1_rep	three_prime_UTR	9502179	9503407	.	+	.	Parent=Os10t0333000-01
Chr10	irgsp1_rep	three_prime_UTR	9503471	9503876	.	+	.	Parent=Os10t0333000-01
Chr10	irgsp1_rep	mRNA	9541494	9542351	.	+	.	ID=Os10t0333700-00;Name=Os10t0333700-00;Locus_id=Os10g0333700;Note=Plant disease resistance response protein domain containing protein.;Transcript_evidence=EU967279 (DDBJ);ORF_evidence=NP_001176086.1 (RefSeq);InterPro=Plant disease resistance response protein (IPR004265);TENOR=Os10t0333700-00
Chr10	irgsp1_rep	CDS	9541494	9541786	.	+	0	Parent=Os10t0333700-00
Chr10	irgsp1_rep	CDS	9542024	9542351	.	+	1	Parent=Os10t0333700-00
Chr10	irgsp1_rep	mRNA	9583113	9584286	.	-	.	ID=Os10t0334500-00;Name=Os10t0334500-00;Locus_id=Os10g0334500;Note=Similar to Dirigent-like protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8LMF1 (UniProt);InterPro=Plant disease resistance response protein (IPR004265);TENOR=Os10t0334500-00
Chr10	irgsp1_rep	CDS	9583913	9584286	.	-	0	Parent=Os10t0334500-00
Chr10	irgsp1_rep	CDS	9583560	9583755	.	-	1	Parent=Os10t0334500-00
Chr10	irgsp1_rep	CDS	9583113	9583157	.	-	0	Parent=Os10t0334500-00
Chr10	irgsp1_rep	mRNA	9616694	9618079	.	+	.	ID=Os10t0335000-01;Name=Os10t0335000-01;Locus_id=Os10g0335000;Note=Dirigent protein%2C Lignin biosynthesis;Transcript_evidence=CT835723 (indica);ORF_evidence=Q7G3R5;GO=Molecular Function: isomerase activity (GO:0016853);InterPro=Allene oxide cyclase/dirigent protein (IPR034871),Dirigent protein (IPR004265);Manual Curation=January 17%2C 2018;Literature_PMID=29045473;TENOR=Os10t0335000-00;KEGG=Os10t0335000-00
Chr10	irgsp1_rep	five_prime_UTR	9616694	9616762	.	+	.	Parent=Os10t0335000-01
Chr10	irgsp1_rep	CDS	9616763	9617064	.	+	0	Parent=Os10t0335000-01
Chr10	irgsp1_rep	CDS	9617319	9617511	.	+	1	Parent=Os10t0335000-01
Chr10	irgsp1_rep	CDS	9617832	9617876	.	+	0	Parent=Os10t0335000-01
Chr10	irgsp1_rep	three_prime_UTR	9617877	9618079	.	+	.	Parent=Os10t0335000-01
Chr10	irgsp1_rep	mRNA	9624707	9628559	.	+	.	ID=Os10t0335200-01;Name=Os10t0335200-01;Locus_id=Os10g0335200;Note=HNH endonuclease domain containing protein.;Transcript_evidence=AK073900 (DDBJ%2C Best hit);ORF_evidence=B6U703 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: endonuclease activity (GO:0004519);InterPro=HNH endonuclease (IPR002711),HNH nuclease (IPR003615);NIAS_FLcDNA=J033073J04;Expression=AK073900;TENOR=Os10t0335200-01;KEGG=Os10t0335200-01
Chr10	irgsp1_rep	five_prime_UTR	9624707	9624811	.	+	.	Parent=Os10t0335200-01
Chr10	irgsp1_rep	CDS	9624812	9625070	.	+	0	Parent=Os10t0335200-01
Chr10	irgsp1_rep	CDS	9626735	9626857	.	+	2	Parent=Os10t0335200-01
Chr10	irgsp1_rep	CDS	9627884	9628038	.	+	2	Parent=Os10t0335200-01
Chr10	irgsp1_rep	three_prime_UTR	9628039	9628559	.	+	.	Parent=Os10t0335200-01
Chr10	irgsp1_rep	mRNA	9624759	9628262	.	+	.	ID=Os10t0335200-02;Name=Os10t0335200-02;Locus_id=Os10g0335200;Note=HNH endonuclease domain containing protein.;Transcript_evidence=AK064034 (DDBJ%2C Best hit);ORF_evidence=B6U703 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: endonuclease activity (GO:0004519);InterPro=HNH endonuclease (IPR002711),HNH nuclease (IPR003615);NIAS_FLcDNA=001-125-C06;Expression=AK064034;TENOR=Os10t0335200-02;KEGG=Os10t0335200-02
Chr10	irgsp1_rep	five_prime_UTR	9624759	9624811	.	+	.	Parent=Os10t0335200-02
Chr10	irgsp1_rep	CDS	9624812	9625070	.	+	0	Parent=Os10t0335200-02
Chr10	irgsp1_rep	CDS	9626735	9626857	.	+	2	Parent=Os10t0335200-02
Chr10	irgsp1_rep	CDS	9627884	9628038	.	+	2	Parent=Os10t0335200-02
Chr10	irgsp1_rep	three_prime_UTR	9628039	9628262	.	+	.	Parent=Os10t0335200-02
Chr10	irgsp1_rep	mRNA	9667167	9670437	.	+	.	ID=Os10t0336300-00;Name=Os10t0336300-00;Locus_id=Os10g0336300;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G824 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Protein kinase-like domain (IPR011009);TENOR=Os10t0336300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	9667167	9668580	.	+	0	Parent=Os10t0336300-00
Chr10	irgsp1_rep	CDS	9670040	9670437	.	+	2	Parent=Os10t0336300-00
Chr10	irgsp1_rep	mRNA	9697028	9697723	.	+	.	ID=Os10t0336600-01;Name=Os10t0336600-01;Locus_id=Os10g0336600;Note=Conserved hypothetical protein.;Transcript_evidence=AK062541 (DDBJ%2C Best hit);ORF_evidence=B9G828 (UniProt);NIAS_FLcDNA=001-104-G02;Expression=AK062541;TENOR=Os10t0336600-01;KEGG=Os10t0336600-01
Chr10	irgsp1_rep	five_prime_UTR	9697028	9697042	.	+	.	Parent=Os10t0336600-01
Chr10	irgsp1_rep	CDS	9697043	9697135	.	+	0	Parent=Os10t0336600-01
Chr10	irgsp1_rep	CDS	9697297	9697617	.	+	0	Parent=Os10t0336600-01
Chr10	irgsp1_rep	three_prime_UTR	9697618	9697723	.	+	.	Parent=Os10t0336600-01
Chr10	irgsp1_rep	mRNA	9697781	9698215	.	-	.	ID=Os10t0336700-00;Name=Os10t0336700-00;Locus_id=Os10g0336700;Note=Non-protein coding transcript.;Transcript_evidence=BT087181 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0336700-00
Chr10	irgsp1_rep	exon	9698079	9698215	.	-	.	Parent=Os10t0336700-00
Chr10	irgsp1_rep	exon	9697781	9697975	.	-	.	Parent=Os10t0336700-00
Chr10	irgsp1_rep	mRNA	9757131	9760573	.	+	.	ID=Os10t0337400-01;Name=Os10t0337400-01;Locus_id=Os10g0337400;Note=Similar to Taxa-1.;Transcript_evidence=AK241352 (DDBJ%2C Best hit);ORF_evidence=Q7XFM6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J065149K15;Oryzabase=19671;TENOR=Os10t0337400-01;KEGG=Os10t0337400-01
Chr10	irgsp1_rep	five_prime_UTR	9757131	9757143	.	+	.	Parent=Os10t0337400-01
Chr10	irgsp1_rep	CDS	9757144	9759877	.	+	0	Parent=Os10t0337400-01
Chr10	irgsp1_rep	CDS	9760114	9760481	.	+	2	Parent=Os10t0337400-01
Chr10	irgsp1_rep	three_prime_UTR	9760482	9760573	.	+	.	Parent=Os10t0337400-01
Chr10	irgsp1_rep	mRNA	9770801	9776538	.	+	.	ID=Os10t0337500-01;Name=Os10t0337500-01;Locus_id=Os10g0337500;CGSNL Gene Symbol=DLN232;CGSNL Gene Name=DLN REPRESSOR 232;Oryzabase Gene Symbol Synonym(s)=OsDLN232;Oryzabase Gene Name Synonym(s)=DLN repressor 232%2C DLN motif protein 232;Note=Zinc finger%2C DHHC-type domain containing protein.;Transcript_evidence=AK073496 (DDBJ%2C Best hit);ORF_evidence=B6SXJ3 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C DHHC-type%2C palmitoyltransferase (IPR001594);NIAS_FLcDNA=J033046O11;Oryzabase=23231;Expression=AK073496;TENOR=Os10t0337500-01;KEGG=Os10t0337500-01
Chr10	irgsp1_rep	five_prime_UTR	9770801	9771134	.	+	.	Parent=Os10t0337500-01
Chr10	irgsp1_rep	CDS	9771135	9771176	.	+	0	Parent=Os10t0337500-01
Chr10	irgsp1_rep	CDS	9771271	9771384	.	+	0	Parent=Os10t0337500-01
Chr10	irgsp1_rep	CDS	9772162	9772533	.	+	0	Parent=Os10t0337500-01
Chr10	irgsp1_rep	CDS	9772972	9773040	.	+	0	Parent=Os10t0337500-01
Chr10	irgsp1_rep	CDS	9773142	9773213	.	+	0	Parent=Os10t0337500-01
Chr10	irgsp1_rep	CDS	9773458	9773586	.	+	0	Parent=Os10t0337500-01
Chr10	irgsp1_rep	CDS	9774078	9774158	.	+	0	Parent=Os10t0337500-01
Chr10	irgsp1_rep	CDS	9775010	9775195	.	+	0	Parent=Os10t0337500-01
Chr10	irgsp1_rep	CDS	9775523	9776248	.	+	0	Parent=Os10t0337500-01
Chr10	irgsp1_rep	three_prime_UTR	9776249	9776538	.	+	.	Parent=Os10t0337500-01
Chr10	irgsp1_rep	mRNA	9776979	9781629	.	-	.	ID=Os10t0337600-01;Name=Os10t0337600-01;Locus_id=Os10g0337600;Note=Similar to Got1-like family protein%2C expressed.;Transcript_evidence=AK240825 (DDBJ%2C Best hit);ORF_evidence=Q339R2 (UniProt);GO=Biological Process: vesicle-mediated transport (GO:0016192);InterPro=Vesicle transport protein%2C Got1/SFT2-like (IPR007305);NIAS_FLcDNA=J065013H19;TENOR=Os10t0337600-01;KEGG=Os10t0337600-01
Chr10	irgsp1_rep	five_prime_UTR	9781453	9781629	.	-	.	Parent=Os10t0337600-01
Chr10	irgsp1_rep	five_prime_UTR	9780564	9780605	.	-	.	Parent=Os10t0337600-01
Chr10	irgsp1_rep	CDS	9780533	9780563	.	-	0	Parent=Os10t0337600-01
Chr10	irgsp1_rep	CDS	9778023	9778114	.	-	2	Parent=Os10t0337600-01
Chr10	irgsp1_rep	CDS	9777864	9777944	.	-	0	Parent=Os10t0337600-01
Chr10	irgsp1_rep	CDS	9777687	9777784	.	-	0	Parent=Os10t0337600-01
Chr10	irgsp1_rep	CDS	9777446	9777527	.	-	1	Parent=Os10t0337600-01
Chr10	irgsp1_rep	CDS	9777322	9777360	.	-	0	Parent=Os10t0337600-01
Chr10	irgsp1_rep	three_prime_UTR	9776979	9777321	.	-	.	Parent=Os10t0337600-01
Chr10	irgsp1_rep	mRNA	9784007	9784649	.	+	.	ID=Os10t0337700-01;Name=Os10t0337700-01;Locus_id=Os10g0337700;Note=Similar to MFP1 attachment factor 1.;Transcript_evidence=AK062808 (DDBJ%2C Best hit);ORF_evidence=Q8S7A8 (UniProt);NIAS_FLcDNA=001-107-D08;Expression=AK062808;TENOR=Os10t0337700-01;KEGG=Os10t0337700-01
Chr10	irgsp1_rep	five_prime_UTR	9784007	9784008	.	+	.	Parent=Os10t0337700-01
Chr10	irgsp1_rep	CDS	9784009	9784431	.	+	0	Parent=Os10t0337700-01
Chr10	irgsp1_rep	three_prime_UTR	9784432	9784649	.	+	.	Parent=Os10t0337700-01
Chr10	irgsp1_rep	mRNA	9830846	9832683	.	+	.	ID=Os10t0338500-01;Name=Os10t0338500-01;Locus_id=Os10g0338500;Note=Conserved hypothetical protein.;Transcript_evidence=AK241932 (DDBJ%2C Best hit);ORF_evidence=Q6YT96 (UniProt);NIAS_FLcDNA=J075080L12;TENOR=Os10t0338500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	9830846	9830849	.	+	.	Parent=Os10t0338500-01
Chr10	irgsp1_rep	CDS	9830850	9830961	.	+	0	Parent=Os10t0338500-01
Chr10	irgsp1_rep	CDS	9832473	9832522	.	+	2	Parent=Os10t0338500-01
Chr10	irgsp1_rep	three_prime_UTR	9832523	9832683	.	+	.	Parent=Os10t0338500-01
Chr10	irgsp1_rep	mRNA	9843867	9844366	.	-	.	ID=Os10t0338858-01;Name=Os10t0338858-01;Locus_id=Os10g0338858;Note=Conserved hypothetical protein.;Transcript_evidence=AK062686 (DDBJ%2C Best hit);ORF_evidence=Q109U8 (UniProt);NIAS_FLcDNA=001-105-H10;TENOR=Os10t0338858-01
Chr10	irgsp1_rep	five_prime_UTR	9844366	9844366	.	-	.	Parent=Os10t0338858-01
Chr10	irgsp1_rep	CDS	9844243	9844365	.	-	0	Parent=Os10t0338858-01
Chr10	irgsp1_rep	three_prime_UTR	9843867	9844242	.	-	.	Parent=Os10t0338858-01
Chr10	irgsp1_rep	mRNA	9860248	9862356	.	+	.	ID=Os10t0339182-01;Name=Os10t0339182-01;Locus_id=Os10g0339182;Note=Conserved hypothetical protein.;Transcript_evidence=AK072372 (DDBJ%2C Best hit);ORF_evidence=B9G838 (UniProt);NIAS_FLcDNA=J023068F06;TENOR=Os10t0339182-01
Chr10	irgsp1_rep	five_prime_UTR	9860248	9860388	.	+	.	Parent=Os10t0339182-01
Chr10	irgsp1_rep	CDS	9860389	9860910	.	+	0	Parent=Os10t0339182-01
Chr10	irgsp1_rep	three_prime_UTR	9860911	9862356	.	+	.	Parent=Os10t0339182-01
Chr10	irgsp1_rep	mRNA	9860275	9861085	.	+	.	ID=Os10t0339182-02;Name=Os10t0339182-02;Locus_id=Os10g0339182;Note=Conserved hypothetical protein.;Transcript_evidence=AK120847 (DDBJ%2C Best hit);ORF_evidence=B9G838 (UniProt);NIAS_FLcDNA=J023023A10;TENOR=Os10t0339182-02
Chr10	irgsp1_rep	five_prime_UTR	9860275	9860388	.	+	.	Parent=Os10t0339182-02
Chr10	irgsp1_rep	CDS	9860389	9860724	.	+	0	Parent=Os10t0339182-02
Chr10	irgsp1_rep	CDS	9860854	9860910	.	+	0	Parent=Os10t0339182-02
Chr10	irgsp1_rep	three_prime_UTR	9860911	9861085	.	+	.	Parent=Os10t0339182-02
Chr10	irgsp1_rep	mRNA	9861144	9868032	.	-	.	ID=Os10t0339290-01;Name=Os10t0339290-01;Locus_id=Os10g0339290;Note=Similar to Alpha-1%2C2-fucosidase.;Transcript_evidence=AK066931 (DDBJ%2C Best hit);ORF_evidence=A8J657 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: alpha-L-fucosidase activity (GO:0004560);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Six-hairpin glycosidase-like (IPR008928),Alpha-L-fucosidase (IPR016518);NIAS_FLcDNA=J013091O15;TENOR=Os10t0339290-01
Chr10	irgsp1_rep	five_prime_UTR	9867921	9868032	.	-	.	Parent=Os10t0339290-01
Chr10	irgsp1_rep	CDS	9867740	9867920	.	-	0	Parent=Os10t0339290-01
Chr10	irgsp1_rep	CDS	9867437	9867582	.	-	2	Parent=Os10t0339290-01
Chr10	irgsp1_rep	CDS	9865983	9866833	.	-	0	Parent=Os10t0339290-01
Chr10	irgsp1_rep	CDS	9864581	9864713	.	-	1	Parent=Os10t0339290-01
Chr10	irgsp1_rep	CDS	9863920	9864078	.	-	0	Parent=Os10t0339290-01
Chr10	irgsp1_rep	CDS	9863401	9863631	.	-	0	Parent=Os10t0339290-01
Chr10	irgsp1_rep	CDS	9863156	9863257	.	-	0	Parent=Os10t0339290-01
Chr10	irgsp1_rep	CDS	9862921	9863056	.	-	0	Parent=Os10t0339290-01
Chr10	irgsp1_rep	CDS	9862058	9862253	.	-	2	Parent=Os10t0339290-01
Chr10	irgsp1_rep	CDS	9861567	9861879	.	-	1	Parent=Os10t0339290-01
Chr10	irgsp1_rep	three_prime_UTR	9861144	9861566	.	-	.	Parent=Os10t0339290-01
Chr10	irgsp1_rep	mRNA	9861344	9867991	.	-	.	ID=Os10t0339290-02;Name=Os10t0339290-02;Locus_id=Os10g0339290;Note=Similar to Alpha-1%2C2-fucosidase.;Transcript_evidence=AK100636 (DDBJ%2C Best hit);ORF_evidence=A8J657 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: alpha-L-fucosidase activity (GO:0004560);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Six-hairpin glycosidase-like (IPR008928),Alpha-L-fucosidase (IPR016518);NIAS_FLcDNA=J023110E05;TENOR=Os10t0339290-02
Chr10	irgsp1_rep	five_prime_UTR	9867921	9867991	.	-	.	Parent=Os10t0339290-02
Chr10	irgsp1_rep	CDS	9867740	9867920	.	-	0	Parent=Os10t0339290-02
Chr10	irgsp1_rep	CDS	9867437	9867582	.	-	2	Parent=Os10t0339290-02
Chr10	irgsp1_rep	CDS	9865983	9866833	.	-	0	Parent=Os10t0339290-02
Chr10	irgsp1_rep	CDS	9864581	9864713	.	-	1	Parent=Os10t0339290-02
Chr10	irgsp1_rep	CDS	9863920	9864078	.	-	0	Parent=Os10t0339290-02
Chr10	irgsp1_rep	CDS	9863401	9863631	.	-	0	Parent=Os10t0339290-02
Chr10	irgsp1_rep	CDS	9863156	9863257	.	-	0	Parent=Os10t0339290-02
Chr10	irgsp1_rep	CDS	9862921	9863056	.	-	0	Parent=Os10t0339290-02
Chr10	irgsp1_rep	CDS	9862058	9862253	.	-	2	Parent=Os10t0339290-02
Chr10	irgsp1_rep	CDS	9861567	9861879	.	-	1	Parent=Os10t0339290-02
Chr10	irgsp1_rep	three_prime_UTR	9861344	9861566	.	-	.	Parent=Os10t0339290-02
Chr10	irgsp1_rep	mRNA	9910689	9917699	.	+	.	ID=Os10t0339400-01;Name=Os10t0339400-01;Locus_id=Os10g0339400;Note=IQ calmodulin-binding region domain containing protein.;Transcript_evidence=AK066876 (DDBJ%2C Best hit);ORF_evidence=NP_195046.3 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048),Dilute (IPR002710),Dil domain (IPR018444);NIAS_FLcDNA=J013075D12;Oryzabase=23570;Expression=AK066876;TENOR=Os10t0339400-01;KEGG=Os10t0339400-01
Chr10	irgsp1_rep	five_prime_UTR	9910689	9910690	.	+	.	Parent=Os10t0339400-01
Chr10	irgsp1_rep	CDS	9910691	9910822	.	+	0	Parent=Os10t0339400-01
Chr10	irgsp1_rep	CDS	9911087	9911206	.	+	0	Parent=Os10t0339400-01
Chr10	irgsp1_rep	CDS	9911787	9911885	.	+	0	Parent=Os10t0339400-01
Chr10	irgsp1_rep	CDS	9912274	9912495	.	+	0	Parent=Os10t0339400-01
Chr10	irgsp1_rep	CDS	9912773	9912912	.	+	0	Parent=Os10t0339400-01
Chr10	irgsp1_rep	CDS	9913032	9913143	.	+	1	Parent=Os10t0339400-01
Chr10	irgsp1_rep	CDS	9913312	9913362	.	+	0	Parent=Os10t0339400-01
Chr10	irgsp1_rep	CDS	9913442	9913531	.	+	0	Parent=Os10t0339400-01
Chr10	irgsp1_rep	CDS	9913688	9913858	.	+	0	Parent=Os10t0339400-01
Chr10	irgsp1_rep	CDS	9913954	9914106	.	+	0	Parent=Os10t0339400-01
Chr10	irgsp1_rep	CDS	9915065	9915241	.	+	0	Parent=Os10t0339400-01
Chr10	irgsp1_rep	CDS	9915336	9915473	.	+	0	Parent=Os10t0339400-01
Chr10	irgsp1_rep	CDS	9915586	9915656	.	+	0	Parent=Os10t0339400-01
Chr10	irgsp1_rep	CDS	9916030	9916129	.	+	1	Parent=Os10t0339400-01
Chr10	irgsp1_rep	CDS	9916615	9916671	.	+	0	Parent=Os10t0339400-01
Chr10	irgsp1_rep	CDS	9916760	9916816	.	+	0	Parent=Os10t0339400-01
Chr10	irgsp1_rep	CDS	9916910	9916990	.	+	0	Parent=Os10t0339400-01
Chr10	irgsp1_rep	CDS	9917073	9917155	.	+	0	Parent=Os10t0339400-01
Chr10	irgsp1_rep	CDS	9917266	9917401	.	+	1	Parent=Os10t0339400-01
Chr10	irgsp1_rep	three_prime_UTR	9917402	9917699	.	+	.	Parent=Os10t0339400-01
Chr10	irgsp1_rep	mRNA	9918288	9918871	.	+	.	ID=Os10t0339532-00;Name=Os10t0339532-00;Locus_id=Os10g0339532;Note=Non-protein coding transcript.;Transcript_evidence=EU943065 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0339532-00
Chr10	irgsp1_rep	exon	9918288	9918871	.	+	.	Parent=Os10t0339532-00
Chr10	irgsp1_rep	mRNA	9921060	9931420	.	-	.	ID=Os10t0339600-01;Name=Os10t0339600-01;Locus_id=Os10g0339600;Note=Similar to Alpha-1%2C2-fucosidase.;Transcript_evidence=AK101675 (DDBJ%2C Best hit);ORF_evidence=A8J657 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: alpha-L-fucosidase activity (GO:0004560);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Six-hairpin glycosidase-like (IPR008928),Alpha-L-fucosidase (IPR016518);NIAS_FLcDNA=J033058F11;TENOR=Os10t0339600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	9931374	9931420	.	-	.	Parent=Os10t0339600-01
Chr10	irgsp1_rep	CDS	9931154	9931373	.	-	0	Parent=Os10t0339600-01
Chr10	irgsp1_rep	CDS	9929133	9929278	.	-	2	Parent=Os10t0339600-01
Chr10	irgsp1_rep	CDS	9928118	9929049	.	-	0	Parent=Os10t0339600-01
Chr10	irgsp1_rep	CDS	9927059	9927191	.	-	1	Parent=Os10t0339600-01
Chr10	irgsp1_rep	CDS	9925180	9925338	.	-	0	Parent=Os10t0339600-01
Chr10	irgsp1_rep	CDS	9924001	9924225	.	-	0	Parent=Os10t0339600-01
Chr10	irgsp1_rep	CDS	9923732	9923833	.	-	0	Parent=Os10t0339600-01
Chr10	irgsp1_rep	CDS	9923510	9923645	.	-	0	Parent=Os10t0339600-01
Chr10	irgsp1_rep	CDS	9922026	9922221	.	-	2	Parent=Os10t0339600-01
Chr10	irgsp1_rep	CDS	9921323	9921629	.	-	1	Parent=Os10t0339600-01
Chr10	irgsp1_rep	three_prime_UTR	9921060	9921322	.	-	.	Parent=Os10t0339600-01
Chr10	irgsp1_rep	mRNA	9930896	9931451	.	+	.	ID=Os10t0339650-01;Name=Os10t0339650-01;Locus_id=Os10g0339650;Note=Non-protein coding transcript.;Transcript_evidence=AK109165 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-155-G12;TENOR=Os10t0339650-01
Chr10	irgsp1_rep	exon	9930896	9931451	.	+	.	Parent=Os10t0339650-01
Chr10	irgsp1_rep	mRNA	9974284	9976307	.	+	.	ID=Os10t0340100-01;Name=Os10t0340100-01;Locus_id=Os10g0340100;Note=Conserved hypothetical protein.;Transcript_evidence=AK111390 (DDBJ%2C Best hit);ORF_evidence=B9G845 (UniProt);NIAS_FLcDNA=002-182-C04;Oryzabase=22556;TENOR=Os10t0340100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	9974284	9974482	.	+	.	Parent=Os10t0340100-01
Chr10	irgsp1_rep	five_prime_UTR	9974586	9974765	.	+	.	Parent=Os10t0340100-01
Chr10	irgsp1_rep	CDS	9974766	9974789	.	+	0	Parent=Os10t0340100-01
Chr10	irgsp1_rep	CDS	9974955	9975130	.	+	0	Parent=Os10t0340100-01
Chr10	irgsp1_rep	CDS	9975960	9976101	.	+	1	Parent=Os10t0340100-01
Chr10	irgsp1_rep	three_prime_UTR	9976102	9976307	.	+	.	Parent=Os10t0340100-01
Chr10	irgsp1_rep	mRNA	9974323	9976309	.	+	.	ID=Os10t0340100-02;Name=Os10t0340100-02;Locus_id=Os10g0340100;Note=Conserved hypothetical protein.;Transcript_evidence=AK243442 (DDBJ%2C Best hit);ORF_evidence=B9G845 (UniProt);NIAS_FLcDNA=J100068F23;Oryzabase=22556;TENOR=Os10t0340100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	9974323	9974482	.	+	.	Parent=Os10t0340100-02
Chr10	irgsp1_rep	five_prime_UTR	9974586	9974765	.	+	.	Parent=Os10t0340100-02
Chr10	irgsp1_rep	CDS	9974766	9974789	.	+	0	Parent=Os10t0340100-02
Chr10	irgsp1_rep	CDS	9974955	9975130	.	+	0	Parent=Os10t0340100-02
Chr10	irgsp1_rep	CDS	9975960	9976101	.	+	1	Parent=Os10t0340100-02
Chr10	irgsp1_rep	three_prime_UTR	9976102	9976309	.	+	.	Parent=Os10t0340100-02
Chr10	irgsp1_rep	mRNA	9984427	9987827	.	+	.	ID=Os10t0340301-01;Name=Os10t0340301-01;Locus_id=Os10g0340301;Note=Conserved hypothetical protein.;Transcript_evidence=AK240674 (DDBJ%2C Best hit);ORF_evidence=NP_001176966.1 (RefSeq);NIAS_FLcDNA=J033142B19;TENOR=Os10t0340301-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	9984427	9985283	.	+	.	Parent=Os10t0340301-01
Chr10	irgsp1_rep	CDS	9985284	9985502	.	+	0	Parent=Os10t0340301-01
Chr10	irgsp1_rep	three_prime_UTR	9985503	9987827	.	+	.	Parent=Os10t0340301-01
Chr10	irgsp1_rep	mRNA	9992320	9992760	.	-	.	ID=Os10t0340450-00;Name=Os10t0340450-00;Locus_id=Os10g0340450;Note=Similar to Putative defensin-like protein 134.;Transcript_evidence=P0CAY4 (UniProt);ORF_evidence=P0CAY4 (UniProt);TENOR=Os10t0340450-00
Chr10	irgsp1_rep	CDS	9992688	9992760	.	-	0	Parent=Os10t0340450-00
Chr10	irgsp1_rep	CDS	9992320	9992495	.	-	2	Parent=Os10t0340450-00
Chr10	irgsp1_rep	mRNA	10012073	10017326	.	-	.	ID=Os10t0340600-01;Name=Os10t0340600-01;Locus_id=Os10g0340600;CGSNL Gene Symbol=BGAL14;CGSNL Gene Name=BETA-GALACTOSIDASE 14;Oryzabase Gene Symbol Synonym(s)=OsBgal14%2C OsBGal14%2C OsEnS-135;Oryzabase Gene Name Synonym(s)=Beta-galactosidase 14%2C Lactase 14%2C endosperm-specific gene 135;Note=Similar to Beta-galactosidase.;Transcript_evidence=AK242960 (DDBJ%2C Best hit);ORF_evidence=B9G847 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: sugar binding (GO:0005529),Molecular Function: cation binding (GO:0043169);InterPro=D-galactoside/L-rhamnose binding SUEL lectin domain (IPR000922),Glycoside hydrolase%2C family 35 (IPR001944),Galactose-binding domain-like (IPR008979),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 35%2C conserved site (IPR019801);NIAS_FLcDNA=J090090G03;Oryzabase=8288;TENOR=Os10t0340600-01;KEGG=Os10t0340600-01
Chr10	irgsp1_rep	five_prime_UTR	10017253	10017326	.	-	.	Parent=Os10t0340600-01
Chr10	irgsp1_rep	CDS	10017073	10017252	.	-	0	Parent=Os10t0340600-01
Chr10	irgsp1_rep	CDS	10016835	10016930	.	-	0	Parent=Os10t0340600-01
Chr10	irgsp1_rep	CDS	10016102	10016214	.	-	0	Parent=Os10t0340600-01
Chr10	irgsp1_rep	CDS	10015916	10015982	.	-	1	Parent=Os10t0340600-01
Chr10	irgsp1_rep	CDS	10015725	10015817	.	-	0	Parent=Os10t0340600-01
Chr10	irgsp1_rep	CDS	10015458	10015610	.	-	0	Parent=Os10t0340600-01
Chr10	irgsp1_rep	CDS	10015259	10015347	.	-	0	Parent=Os10t0340600-01
Chr10	irgsp1_rep	CDS	10015035	10015140	.	-	1	Parent=Os10t0340600-01
Chr10	irgsp1_rep	CDS	10014870	10014957	.	-	0	Parent=Os10t0340600-01
Chr10	irgsp1_rep	CDS	10014628	10014746	.	-	2	Parent=Os10t0340600-01
Chr10	irgsp1_rep	CDS	10014168	10014329	.	-	0	Parent=Os10t0340600-01
Chr10	irgsp1_rep	CDS	10013833	10014029	.	-	0	Parent=Os10t0340600-01
Chr10	irgsp1_rep	CDS	10013637	10013725	.	-	1	Parent=Os10t0340600-01
Chr10	irgsp1_rep	CDS	10013401	10013510	.	-	2	Parent=Os10t0340600-01
Chr10	irgsp1_rep	CDS	10013175	10013288	.	-	0	Parent=Os10t0340600-01
Chr10	irgsp1_rep	CDS	10012986	10013093	.	-	0	Parent=Os10t0340600-01
Chr10	irgsp1_rep	CDS	10012281	10012883	.	-	0	Parent=Os10t0340600-01
Chr10	irgsp1_rep	three_prime_UTR	10012073	10012280	.	-	.	Parent=Os10t0340600-01
Chr10	irgsp1_rep	mRNA	10022541	10023354	.	+	.	ID=Os10t0340800-01;Name=Os10t0340800-01;Locus_id=Os10g0340800;Note=Conserved hypothetical protein.;Transcript_evidence=AK070380 (DDBJ%2C Best hit);ORF_evidence=Q947Z7 (UniProt);NIAS_FLcDNA=J023052O04;Expression=AK070380;TENOR=Os10t0340800-01;KEGG=Os10t0340800-01
Chr10	irgsp1_rep	five_prime_UTR	10022541	10022817	.	+	.	Parent=Os10t0340800-01
Chr10	irgsp1_rep	CDS	10022818	10023219	.	+	0	Parent=Os10t0340800-01
Chr10	irgsp1_rep	three_prime_UTR	10023220	10023354	.	+	.	Parent=Os10t0340800-01
Chr10	irgsp1_rep	mRNA	10022574	10023316	.	+	.	ID=Os10t0340800-02;Name=Os10t0340800-02;Locus_id=Os10g0340800;Note=Conserved hypothetical protein.;Transcript_evidence=AK066322 (DDBJ%2C Best hit);ORF_evidence=Q947Z7 (UniProt);NIAS_FLcDNA=J013062A07;Expression=AK066322;TENOR=Os10t0340800-02;KEGG=Os10t0340800-02
Chr10	irgsp1_rep	five_prime_UTR	10022574	10022817	.	+	.	Parent=Os10t0340800-02
Chr10	irgsp1_rep	CDS	10022818	10023219	.	+	0	Parent=Os10t0340800-02
Chr10	irgsp1_rep	three_prime_UTR	10023220	10023316	.	+	.	Parent=Os10t0340800-02
Chr10	irgsp1_rep	mRNA	10025686	10025747	.	-	.	ID=Os10t0340950-00;Name=Os10t0340950-00;Locus_id=Os10g0340950;Note=Non-protein coding transcript.;Transcript_evidence=EU941912 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0340950-00
Chr10	irgsp1_rep	exon	10025686	10025747	.	-	.	Parent=Os10t0340950-00
Chr10	irgsp1_rep	mRNA	10078307	10084089	.	-	.	ID=Os10t0341101-01;Name=Os10t0341101-01;Locus_id=Os10g0341101;Note=Conserved hypothetical protein.;Transcript_evidence=AK288904 (DDBJ%2C Best hit);ORF_evidence=A2ZFX3 (UniProt);NIAS_FLcDNA=J090080N15;TENOR=Os10t0341101-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	10082703	10084089	.	-	.	Parent=Os10t0341101-01
Chr10	irgsp1_rep	CDS	10082454	10082702	.	-	0	Parent=Os10t0341101-01
Chr10	irgsp1_rep	three_prime_UTR	10078307	10082453	.	-	.	Parent=Os10t0341101-01
Chr10	irgsp1_rep	mRNA	10086613	10090361	.	-	.	ID=Os10t0341401-01;Name=Os10t0341401-01;Locus_id=Os10g0341401;Note=Hypothetical gene.;Transcript_evidence=AK288306 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090020F22;TENOR=Os10t0341401-01;KEGG=Os10t0341401-01
Chr10	irgsp1_rep	five_prime_UTR	10089903	10090361	.	-	.	Parent=Os10t0341401-01
Chr10	irgsp1_rep	CDS	10089495	10089902	.	-	0	Parent=Os10t0341401-01
Chr10	irgsp1_rep	three_prime_UTR	10086613	10089494	.	-	.	Parent=Os10t0341401-01
Chr10	irgsp1_rep	mRNA	10089510	10095033	.	+	.	ID=Os10t0341700-01;Name=Os10t0341700-01;Locus_id=Os10g0341700;CGSNL Gene Symbol=CSLH1;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE H1;Oryzabase Gene Symbol Synonym(s)=OsCslH1%2C OsCSLH1;Note=Cellulose synthase-like H1.;Transcript_evidence=AK121003 (DDBJ%2C Best hit);ORF_evidence=B7EFU3 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150);NIAS_FLcDNA=J023045B21;Oryzabase=9069;Expression=AK121003;TENOR=Os10t0341700-01;KEGG=Os10t0341700-01
Chr10	irgsp1_rep	five_prime_UTR	10089510	10089555	.	+	.	Parent=Os10t0341700-01
Chr10	irgsp1_rep	CDS	10089556	10089815	.	+	0	Parent=Os10t0341700-01
Chr10	irgsp1_rep	CDS	10089920	10090247	.	+	1	Parent=Os10t0341700-01
Chr10	irgsp1_rep	CDS	10091954	10092079	.	+	0	Parent=Os10t0341700-01
Chr10	irgsp1_rep	CDS	10092239	10092358	.	+	0	Parent=Os10t0341700-01
Chr10	irgsp1_rep	CDS	10092641	10092853	.	+	0	Parent=Os10t0341700-01
Chr10	irgsp1_rep	CDS	10092944	10093055	.	+	0	Parent=Os10t0341700-01
Chr10	irgsp1_rep	CDS	10093324	10093508	.	+	2	Parent=Os10t0341700-01
Chr10	irgsp1_rep	CDS	10093601	10093951	.	+	0	Parent=Os10t0341700-01
Chr10	irgsp1_rep	CDS	10094117	10094674	.	+	0	Parent=Os10t0341700-01
Chr10	irgsp1_rep	three_prime_UTR	10094675	10095033	.	+	.	Parent=Os10t0341700-01
Chr10	irgsp1_rep	mRNA	10089552	10094802	.	+	.	ID=Os10t0341700-02;Name=Os10t0341700-02;Locus_id=Os10g0341700;CGSNL Gene Symbol=CSLH1;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE H1;Oryzabase Gene Symbol Synonym(s)=OsCslH1%2C OsCSLH1;Note=Cellulose synthase-like H1.;Transcript_evidence=AK069071 (DDBJ%2C Best hit);ORF_evidence=Q339N5 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150);NIAS_FLcDNA=J023010H01;Oryzabase=9069;Expression=AK069071;TENOR=Os10t0341700-02;KEGG=Os10t0341700-02
Chr10	irgsp1_rep	five_prime_UTR	10089552	10089555	.	+	.	Parent=Os10t0341700-02
Chr10	irgsp1_rep	CDS	10089556	10089815	.	+	0	Parent=Os10t0341700-02
Chr10	irgsp1_rep	CDS	10089920	10090247	.	+	1	Parent=Os10t0341700-02
Chr10	irgsp1_rep	CDS	10091954	10092079	.	+	0	Parent=Os10t0341700-02
Chr10	irgsp1_rep	CDS	10092239	10092358	.	+	0	Parent=Os10t0341700-02
Chr10	irgsp1_rep	CDS	10092641	10092853	.	+	0	Parent=Os10t0341700-02
Chr10	irgsp1_rep	CDS	10092944	10093055	.	+	0	Parent=Os10t0341700-02
Chr10	irgsp1_rep	CDS	10093324	10093508	.	+	2	Parent=Os10t0341700-02
Chr10	irgsp1_rep	CDS	10093601	10093951	.	+	0	Parent=Os10t0341700-02
Chr10	irgsp1_rep	CDS	10094117	10094674	.	+	0	Parent=Os10t0341700-02
Chr10	irgsp1_rep	three_prime_UTR	10094675	10094802	.	+	.	Parent=Os10t0341700-02
Chr10	irgsp1_rep	mRNA	10092702	10095035	.	+	.	ID=Os10t0341700-03;Name=Os10t0341700-03;Locus_id=Os10g0341700;CGSNL Gene Symbol=CSLH1;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE H1;Oryzabase Gene Symbol Synonym(s)=OsCslH1%2C OsCSLH1;Note=Similar to cDNA clone:J023010H01%2C full insert sequence.;Transcript_evidence=AK060286 (DDBJ%2C Best hit);ORF_evidence=B7EFU3 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150);NIAS_FLcDNA=001-006-C08;Oryzabase=9069;Expression=AK060286;TENOR=Os10t0341700-03;KEGG=Os10t0341700-03
Chr10	irgsp1_rep	five_prime_UTR	10092702	10092703	.	+	.	Parent=Os10t0341700-03
Chr10	irgsp1_rep	CDS	10092704	10092853	.	+	0	Parent=Os10t0341700-03
Chr10	irgsp1_rep	CDS	10092944	10093055	.	+	0	Parent=Os10t0341700-03
Chr10	irgsp1_rep	CDS	10093324	10093508	.	+	2	Parent=Os10t0341700-03
Chr10	irgsp1_rep	CDS	10093601	10093951	.	+	0	Parent=Os10t0341700-03
Chr10	irgsp1_rep	CDS	10094117	10094674	.	+	0	Parent=Os10t0341700-03
Chr10	irgsp1_rep	three_prime_UTR	10094675	10095035	.	+	.	Parent=Os10t0341700-03
Chr10	irgsp1_rep	mRNA	10093626	10094978	.	+	.	ID=Os10t0341700-04;Name=Os10t0341700-04;Locus_id=Os10g0341700;CGSNL Gene Symbol=CSLH1;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE H1;Oryzabase Gene Symbol Synonym(s)=OsCslH1%2C OsCSLH1;Note=Similar to cDNA clone:J023010H01%2C full insert sequence.;Transcript_evidence=AK061162 (DDBJ%2C Best hit);ORF_evidence=B7EFU3 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150);NIAS_FLcDNA=006-209-A01;Oryzabase=9069;Expression=AK061162;TENOR=Os10t0341700-04;KEGG=Os10t0341700-04
Chr10	irgsp1_rep	five_prime_UTR	10093626	10093627	.	+	.	Parent=Os10t0341700-04
Chr10	irgsp1_rep	CDS	10093628	10093951	.	+	0	Parent=Os10t0341700-04
Chr10	irgsp1_rep	CDS	10094117	10094674	.	+	0	Parent=Os10t0341700-04
Chr10	irgsp1_rep	three_prime_UTR	10094675	10094978	.	+	.	Parent=Os10t0341700-04
Chr10	irgsp1_rep	mRNA	10101815	10104190	.	+	.	ID=Os10t0341750-00;Name=Os10t0341750-00;Locus_id=Os10g0341750;Note=Hypothetical protein.;Transcript_evidence=tplb0028c09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0341750-00
Chr10	irgsp1_rep	five_prime_UTR	10101815	10102453	.	+	.	Parent=Os10t0341750-00
Chr10	irgsp1_rep	CDS	10102454	10102735	.	+	0	Parent=Os10t0341750-00
Chr10	irgsp1_rep	three_prime_UTR	10102736	10104190	.	+	.	Parent=Os10t0341750-00
Chr10	irgsp1_rep	mRNA	10118414	10119626	.	+	.	ID=Os10t0341800-01;Name=Os10t0341800-01;Locus_id=Os10g0341800;Note=Hypothetical conserved gene.;Transcript_evidence=AK240955 (DDBJ%2C Best hit);ORF_evidence=A6N1M0 (UniProt);NIAS_FLcDNA=J065044I04;TENOR=Os10t0341800-01;KEGG=Os10t0341800-01
Chr10	irgsp1_rep	five_prime_UTR	10118414	10118415	.	+	.	Parent=Os10t0341800-01
Chr10	irgsp1_rep	CDS	10118416	10118634	.	+	0	Parent=Os10t0341800-01
Chr10	irgsp1_rep	three_prime_UTR	10118635	10118649	.	+	.	Parent=Os10t0341800-01
Chr10	irgsp1_rep	three_prime_UTR	10119039	10119626	.	+	.	Parent=Os10t0341800-01
Chr10	irgsp1_rep	mRNA	10120371	10122900	.	-	.	ID=Os10t0342300-01;Name=Os10t0342300-01;Locus_id=Os10g0342300;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK241262 (DDBJ%2C Best hit);ORF_evidence=Q01K01 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),S-receptor-like serine/threonine-protein kinase (IPR024171);NIAS_FLcDNA=J065131P13;TENOR=Os10t0342300-01;KEGG=Os10t0342300-01
Chr10	irgsp1_rep	CDS	10120477	10122900	.	-	0	Parent=Os10t0342300-01
Chr10	irgsp1_rep	three_prime_UTR	10120371	10120476	.	-	.	Parent=Os10t0342300-01
Chr10	irgsp1_rep	mRNA	10120528	10122944	.	+	.	ID=Os10t0342650-00;Name=Os10t0342650-00;Locus_id=Os10g0342650;Note=Hypothetical protein.;Transcript_evidence=tplb0036o12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0342650-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	10120528	10121167	.	+	.	Parent=Os10t0342650-00
Chr10	irgsp1_rep	CDS	10121168	10121449	.	+	0	Parent=Os10t0342650-00
Chr10	irgsp1_rep	three_prime_UTR	10121450	10121908	.	+	.	Parent=Os10t0342650-00
Chr10	irgsp1_rep	three_prime_UTR	10122074	10122944	.	+	.	Parent=Os10t0342650-00
Chr10	irgsp1_rep	mRNA	10162871	10163646	.	+	.	ID=Os10t0343000-01;Name=Os10t0343000-01;Locus_id=Os10g0343000;Note=Conserved hypothetical protein.;Transcript_evidence=AK121406 (DDBJ%2C Best hit);ORF_evidence=Q8LMA1 (UniProt);NIAS_FLcDNA=J023132I19;Expression=AK121406;TENOR=Os10t0343000-01;KEGG=Os10t0343000-01
Chr10	irgsp1_rep	five_prime_UTR	10162871	10162910	.	+	.	Parent=Os10t0343000-01
Chr10	irgsp1_rep	CDS	10162911	10163615	.	+	0	Parent=Os10t0343000-01
Chr10	irgsp1_rep	three_prime_UTR	10163616	10163646	.	+	.	Parent=Os10t0343000-01
Chr10	irgsp1_rep	mRNA	10162910	10164984	.	+	.	ID=Os10t0343000-02;Name=Os10t0343000-02;Locus_id=Os10g0343000;Note=Conserved hypothetical protein.;Transcript_evidence=AK069512 (DDBJ%2C Best hit);ORF_evidence=Q8LMA1 (UniProt);NIAS_FLcDNA=J023019C10;Expression=AK069512;TENOR=Os10t0343000-02;KEGG=Os10t0343000-02
Chr10	irgsp1_rep	five_prime_UTR	10162910	10162910	.	+	.	Parent=Os10t0343000-02
Chr10	irgsp1_rep	CDS	10162911	10163615	.	+	0	Parent=Os10t0343000-02
Chr10	irgsp1_rep	three_prime_UTR	10163616	10164613	.	+	.	Parent=Os10t0343000-02
Chr10	irgsp1_rep	three_prime_UTR	10164722	10164984	.	+	.	Parent=Os10t0343000-02
Chr10	irgsp1_rep	mRNA	10167156	10167569	.	-	.	ID=Os10t0343050-01;Name=Os10t0343050-01;Locus_id=Os10g0343050;Note=Non-protein coding transcript.;Transcript_evidence=AK241911 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J075055O15;TENOR=Os10t0343050-01
Chr10	irgsp1_rep	exon	10167156	10167569	.	-	.	Parent=Os10t0343050-01
Chr10	irgsp1_rep	mRNA	10170579	10174444	.	+	.	ID=Os10t0343100-01;Name=Os10t0343100-01;Locus_id=Os10g0343100;Note=Syntaxin 6%2C N-terminal domain containing protein.;Transcript_evidence=AK100724 (DDBJ%2C Best hit);ORF_evidence=B9G851 (UniProt);GO=Biological Process: vesicle-mediated transport (GO:0016192),Biological Process: Golgi vesicle transport (GO:0048193),Cellular Component: membrane (GO:0016020);InterPro=t-SNARE (IPR010989),Syntaxin 6%2C N-terminal (IPR015260);NIAS_FLcDNA=J023117B09;Oryzabase=22756;Expression=AK100724;TENOR=Os10t0343100-01;KEGG=Os10t0343100-01
Chr10	irgsp1_rep	five_prime_UTR	10170579	10170695	.	+	.	Parent=Os10t0343100-01
Chr10	irgsp1_rep	CDS	10170696	10170772	.	+	0	Parent=Os10t0343100-01
Chr10	irgsp1_rep	CDS	10170879	10171035	.	+	1	Parent=Os10t0343100-01
Chr10	irgsp1_rep	CDS	10171652	10172305	.	+	0	Parent=Os10t0343100-01
Chr10	irgsp1_rep	CDS	10172415	10172601	.	+	0	Parent=Os10t0343100-01
Chr10	irgsp1_rep	CDS	10173103	10173131	.	+	2	Parent=Os10t0343100-01
Chr10	irgsp1_rep	three_prime_UTR	10173132	10173191	.	+	.	Parent=Os10t0343100-01
Chr10	irgsp1_rep	three_prime_UTR	10173579	10174444	.	+	.	Parent=Os10t0343100-01
Chr10	irgsp1_rep	mRNA	10174526	10177244	.	-	.	ID=Os10t0343200-01;Name=Os10t0343200-01;Locus_id=Os10g0343200;Note=Uncharacterised protein family UPF0497%2C trans-membrane plant domain containing protein.;Transcript_evidence=AK108244 (DDBJ%2C Best hit);ORF_evidence=A2Z669 (UniProt);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);NIAS_FLcDNA=002-140-H04;Expression=AK108244;TENOR=Os10t0343200-01;KEGG=Os10t0343200-01
Chr10	irgsp1_rep	five_prime_UTR	10177145	10177244	.	-	.	Parent=Os10t0343200-01
Chr10	irgsp1_rep	CDS	10176858	10177144	.	-	0	Parent=Os10t0343200-01
Chr10	irgsp1_rep	CDS	10175170	10175302	.	-	1	Parent=Os10t0343200-01
Chr10	irgsp1_rep	CDS	10174871	10175062	.	-	0	Parent=Os10t0343200-01
Chr10	irgsp1_rep	three_prime_UTR	10174526	10174870	.	-	.	Parent=Os10t0343200-01
Chr10	irgsp1_rep	mRNA	10180422	10187639	.	-	.	ID=Os10t0343400-01;Name=Os10t0343400-01;Locus_id=Os10g0343400;CGSNL Gene Symbol=CSLF7;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE F7;Oryzabase Gene Symbol Synonym(s)=OsCslF7%2C OsCSLF7;Note=Cellulose synthase family protein.;Transcript_evidence=AK110467 (DDBJ%2C Best hit);ORF_evidence=B1P2T5 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150);NIAS_FLcDNA=002-166-G08;Oryzabase=13907;Expression=AK110467;TENOR=Os10t0343400-01;KEGG=Os10t0343400-01
Chr10	irgsp1_rep	five_prime_UTR	10187602	10187639	.	-	.	Parent=Os10t0343400-01
Chr10	irgsp1_rep	CDS	10187423	10187601	.	-	0	Parent=Os10t0343400-01
Chr10	irgsp1_rep	CDS	10180620	10182933	.	-	1	Parent=Os10t0343400-01
Chr10	irgsp1_rep	three_prime_UTR	10180422	10180619	.	-	.	Parent=Os10t0343400-01
Chr10	irgsp1_rep	mRNA	10189694	10195055	.	-	.	ID=Os10t0343500-00;Name=Os10t0343500-00;Locus_id=Os10g0343500;Note=Transposase%2C Ptta/En/Spm%2C plant domain containing protein.;Transcript_evidence=AK119367 (DDBJ%2C Secondary hit);ORF_evidence=B9FW60 (UniProt);InterPro=Transposase%2C Ptta/En/Spm%2C plant (IPR004252);TENOR=Os10t0343500-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	10194709	10195055	.	-	.	Parent=Os10t0343500-00
Chr10	irgsp1_rep	five_prime_UTR	10194124	10194387	.	-	.	Parent=Os10t0343500-00
Chr10	irgsp1_rep	five_prime_UTR	10193971	10194017	.	-	.	Parent=Os10t0343500-00
Chr10	irgsp1_rep	five_prime_UTR	10193729	10193942	.	-	.	Parent=Os10t0343500-00
Chr10	irgsp1_rep	CDS	10193720	10193728	.	-	0	Parent=Os10t0343500-00
Chr10	irgsp1_rep	CDS	10193420	10193623	.	-	0	Parent=Os10t0343500-00
Chr10	irgsp1_rep	CDS	10193218	10193310	.	-	0	Parent=Os10t0343500-00
Chr10	irgsp1_rep	CDS	10193029	10193124	.	-	0	Parent=Os10t0343500-00
Chr10	irgsp1_rep	CDS	10192601	10192945	.	-	0	Parent=Os10t0343500-00
Chr10	irgsp1_rep	CDS	10192442	10192510	.	-	0	Parent=Os10t0343500-00
Chr10	irgsp1_rep	CDS	10192266	10192349	.	-	0	Parent=Os10t0343500-00
Chr10	irgsp1_rep	CDS	10192113	10192178	.	-	0	Parent=Os10t0343500-00
Chr10	irgsp1_rep	CDS	10191784	10191849	.	-	0	Parent=Os10t0343500-00
Chr10	irgsp1_rep	CDS	10191585	10191650	.	-	0	Parent=Os10t0343500-00
Chr10	irgsp1_rep	CDS	10191441	10191506	.	-	0	Parent=Os10t0343500-00
Chr10	irgsp1_rep	CDS	10191276	10191323	.	-	0	Parent=Os10t0343500-00
Chr10	irgsp1_rep	CDS	10191135	10191197	.	-	0	Parent=Os10t0343500-00
Chr10	irgsp1_rep	CDS	10190984	10191049	.	-	0	Parent=Os10t0343500-00
Chr10	irgsp1_rep	CDS	10190762	10190821	.	-	0	Parent=Os10t0343500-00
Chr10	irgsp1_rep	CDS	10190587	10190652	.	-	0	Parent=Os10t0343500-00
Chr10	irgsp1_rep	CDS	10190370	10190417	.	-	0	Parent=Os10t0343500-00
Chr10	irgsp1_rep	CDS	10189939	10189959	.	-	0	Parent=Os10t0343500-00
Chr10	irgsp1_rep	three_prime_UTR	10189694	10189938	.	-	.	Parent=Os10t0343500-00
Chr10	irgsp1_rep	mRNA	10216071	10218319	.	-	.	ID=Os10t0343900-01;Name=Os10t0343900-01;Locus_id=Os10g0343900;Note=Thioredoxin fold domain containing protein.;Transcript_evidence=AK071027 (DDBJ%2C Best hit);ORF_evidence=NP_001147147.1 (RefSeq);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin (IPR002109),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=J023075N21;Expression=AK071027;TENOR=Os10t0343900-01;KEGG=Os10t0343900-01
Chr10	irgsp1_rep	five_prime_UTR	10218313	10218319	.	-	.	Parent=Os10t0343900-01
Chr10	irgsp1_rep	CDS	10217914	10218312	.	-	0	Parent=Os10t0343900-01
Chr10	irgsp1_rep	three_prime_UTR	10217196	10217913	.	-	.	Parent=Os10t0343900-01
Chr10	irgsp1_rep	three_prime_UTR	10216071	10217096	.	-	.	Parent=Os10t0343900-01
Chr10	irgsp1_rep	mRNA	10230680	10231207	.	-	.	ID=Os10t0343951-00;Name=Os10t0343951-00;Locus_id=Os10g0343951;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B8BGG6 (UniProt);TENOR=Os10t0343951-00;KEGG=Os10t0343951-00
Chr10	irgsp1_rep	CDS	10230680	10231207	.	-	0	Parent=Os10t0343951-00
Chr10	irgsp1_rep	mRNA	10231802	10234439	.	-	.	ID=Os10t0344000-01;Name=Os10t0344000-01;Locus_id=Os10g0344000;Note=Similar to transparent testa 12 protein.;Transcript_evidence=AK105578 (DDBJ%2C Best hit);ORF_evidence=NP_001147687.1 (RefSeq);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);NIAS_FLcDNA=001-128-E01;TENOR=Os10t0344000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	10234394	10234439	.	-	.	Parent=Os10t0344000-01
Chr10	irgsp1_rep	CDS	10234046	10234393	.	-	0	Parent=Os10t0344000-01
Chr10	irgsp1_rep	three_prime_UTR	10233476	10234045	.	-	.	Parent=Os10t0344000-01
Chr10	irgsp1_rep	three_prime_UTR	10233224	10233310	.	-	.	Parent=Os10t0344000-01
Chr10	irgsp1_rep	three_prime_UTR	10233084	10233140	.	-	.	Parent=Os10t0344000-01
Chr10	irgsp1_rep	three_prime_UTR	10232529	10232767	.	-	.	Parent=Os10t0344000-01
Chr10	irgsp1_rep	three_prime_UTR	10232249	10232367	.	-	.	Parent=Os10t0344000-01
Chr10	irgsp1_rep	three_prime_UTR	10231802	10232117	.	-	.	Parent=Os10t0344000-01
Chr10	irgsp1_rep	mRNA	10243221	10252736	.	-	.	ID=Os10t0344500-00;Name=Os10t0344500-00;Locus_id=Os10g0344500;Note=Similar to cDNA clone:001-128-E01%2C full insert sequence.;Transcript_evidence=EU971580 (DDBJ);ORF_evidence=Q339M2 (UniProt);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);TENOR=Os10t0344500-00;KEGG=Os10t0344500-00
Chr10	irgsp1_rep	CDS	10252377	10252736	.	-	0	Parent=Os10t0344500-00
Chr10	irgsp1_rep	CDS	10251729	10252273	.	-	0	Parent=Os10t0344500-00
Chr10	irgsp1_rep	CDS	10250245	10250331	.	-	1	Parent=Os10t0344500-00
Chr10	irgsp1_rep	CDS	10250105	10250161	.	-	1	Parent=Os10t0344500-00
Chr10	irgsp1_rep	CDS	10243797	10244035	.	-	1	Parent=Os10t0344500-00
Chr10	irgsp1_rep	CDS	10243523	10243641	.	-	2	Parent=Os10t0344500-00
Chr10	irgsp1_rep	CDS	10243221	10243373	.	-	0	Parent=Os10t0344500-00
Chr10	irgsp1_rep	mRNA	10257767	10258401	.	+	.	ID=Os10t0344550-00;Name=Os10t0344550-00;Locus_id=Os10g0344550;Note=Conserved hypothetical protein.;Transcript_evidence=CT835816 (DDBJ%2C Best hit);ORF_evidence=Q75GM6 (UniProt);TENOR=Os10t0344550-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	10257767	10258002	.	+	.	Parent=Os10t0344550-00
Chr10	irgsp1_rep	five_prime_UTR	10258083	10258098	.	+	.	Parent=Os10t0344550-00
Chr10	irgsp1_rep	five_prime_UTR	10258119	10258219	.	+	.	Parent=Os10t0344550-00
Chr10	irgsp1_rep	CDS	10258220	10258333	.	+	0	Parent=Os10t0344550-00
Chr10	irgsp1_rep	three_prime_UTR	10258334	10258401	.	+	.	Parent=Os10t0344550-00
Chr10	irgsp1_rep	mRNA	10278806	10283435	.	-	.	ID=Os10t0344800-00;Name=Os10t0344800-00;Locus_id=Os10g0344800;Note=Similar to Phosphoglycerate mutase family protein%2C expressed.;Transcript_evidence=AK240952 (DDBJ%2C Secondary hit);ORF_evidence=Q2RAT6 (UniProt);InterPro=Histidine phosphatase superfamily%2C clade-1 (IPR013078);TENOR=Os10t0344800-00;KEGG=Os10t0344800-00
Chr10	irgsp1_rep	five_prime_UTR	10283356	10283435	.	-	.	Parent=Os10t0344800-00
Chr10	irgsp1_rep	five_prime_UTR	10282685	10282727	.	-	.	Parent=Os10t0344800-00
Chr10	irgsp1_rep	five_prime_UTR	10282496	10282540	.	-	.	Parent=Os10t0344800-00
Chr10	irgsp1_rep	CDS	10282430	10282495	.	-	0	Parent=Os10t0344800-00
Chr10	irgsp1_rep	CDS	10282207	10282365	.	-	0	Parent=Os10t0344800-00
Chr10	irgsp1_rep	CDS	10280668	10280757	.	-	0	Parent=Os10t0344800-00
Chr10	irgsp1_rep	three_prime_UTR	10280585	10280667	.	-	.	Parent=Os10t0344800-00
Chr10	irgsp1_rep	three_prime_UTR	10279440	10279636	.	-	.	Parent=Os10t0344800-00
Chr10	irgsp1_rep	three_prime_UTR	10278806	10279143	.	-	.	Parent=Os10t0344800-00
Chr10	irgsp1_rep	mRNA	10293210	10295890	.	+	.	ID=Os10t0344900-01;Name=Os10t0344900-01;Locus_id=Os10g0344900;Note=Multi antimicrobial extrusion protein MatE family protein.;Transcript_evidence=AK073245 (DDBJ%2C Best hit),AK103119 (DDBJ%2C Best hit);ORF_evidence=NP_001147687.1 (RefSeq);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);NIAS_FLcDNA=J033012J16,J033119H22;TENOR=Os10t0344900-01
Chr10	irgsp1_rep	five_prime_UTR	10293210	10293281	.	+	.	Parent=Os10t0344900-01
Chr10	irgsp1_rep	CDS	10293282	10293530	.	+	0	Parent=Os10t0344900-01
Chr10	irgsp1_rep	CDS	10293640	10294184	.	+	0	Parent=Os10t0344900-01
Chr10	irgsp1_rep	CDS	10294439	10294525	.	+	1	Parent=Os10t0344900-01
Chr10	irgsp1_rep	CDS	10294622	10294678	.	+	1	Parent=Os10t0344900-01
Chr10	irgsp1_rep	CDS	10294781	10295019	.	+	1	Parent=Os10t0344900-01
Chr10	irgsp1_rep	CDS	10295143	10295261	.	+	2	Parent=Os10t0344900-01
Chr10	irgsp1_rep	CDS	10295399	10295485	.	+	0	Parent=Os10t0344900-01
Chr10	irgsp1_rep	CDS	10295588	10295638	.	+	0	Parent=Os10t0344900-01
Chr10	irgsp1_rep	three_prime_UTR	10295639	10295890	.	+	.	Parent=Os10t0344900-01
Chr10	irgsp1_rep	mRNA	10301639	10304353	.	-	.	ID=Os10t0345100-01;Name=Os10t0345100-01;Locus_id=Os10g0345100;Note=Multi antimicrobial extrusion protein MatE family protein.;Transcript_evidence=AK069792 (DDBJ%2C Best hit);ORF_evidence=Q7XFI3 (UniProt);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);NIAS_FLcDNA=J023031K22;Expression=AK069792;TENOR=Os10t0345100-01;KEGG=Os10t0345100-01
Chr10	irgsp1_rep	five_prime_UTR	10304352	10304353	.	-	.	Parent=Os10t0345100-01
Chr10	irgsp1_rep	CDS	10304097	10304351	.	-	0	Parent=Os10t0345100-01
Chr10	irgsp1_rep	CDS	10303454	10303998	.	-	0	Parent=Os10t0345100-01
Chr10	irgsp1_rep	CDS	10303154	10303240	.	-	1	Parent=Os10t0345100-01
Chr10	irgsp1_rep	CDS	10303007	10303063	.	-	1	Parent=Os10t0345100-01
Chr10	irgsp1_rep	CDS	10302673	10302911	.	-	1	Parent=Os10t0345100-01
Chr10	irgsp1_rep	CDS	10302432	10302550	.	-	2	Parent=Os10t0345100-01
Chr10	irgsp1_rep	CDS	10302250	10302336	.	-	0	Parent=Os10t0345100-01
Chr10	irgsp1_rep	CDS	10302099	10302149	.	-	0	Parent=Os10t0345100-01
Chr10	irgsp1_rep	three_prime_UTR	10301639	10302098	.	-	.	Parent=Os10t0345100-01
Chr10	irgsp1_rep	mRNA	10337377	10339305	.	+	.	ID=Os10t0345600-01;Name=Os10t0345600-01;Locus_id=Os10g0345600;Note=Protein of unknown function DUF566 family protein.;Transcript_evidence=AK120994 (DDBJ%2C Best hit);ORF_evidence=Q94HE4 (UniProt);InterPro=Protein of unknown function DUF566 (IPR007573);NIAS_FLcDNA=J023043O20;Expression=AK120994;TENOR=Os10t0345600-01;KEGG=Os10t0345600-01
Chr10	irgsp1_rep	five_prime_UTR	10337377	10337506	.	+	.	Parent=Os10t0345600-01
Chr10	irgsp1_rep	CDS	10337507	10338475	.	+	0	Parent=Os10t0345600-01
Chr10	irgsp1_rep	three_prime_UTR	10338476	10339305	.	+	.	Parent=Os10t0345600-01
Chr10	irgsp1_rep	mRNA	10337464	10342588	.	-	.	ID=Os10t0345650-00;Name=Os10t0345650-00;Locus_id=Os10g0345650;Note=Hypothetical protein.;Transcript_evidence=tplb0054f13 (Wheat FLcDNA);ORF_evidence=GeneMark;TENOR=Os10t0345650-00
Chr10	irgsp1_rep	five_prime_UTR	10342457	10342588	.	-	.	Parent=Os10t0345650-00
Chr10	irgsp1_rep	five_prime_UTR	10342213	10342361	.	-	.	Parent=Os10t0345650-00
Chr10	irgsp1_rep	five_prime_UTR	10341676	10341738	.	-	.	Parent=Os10t0345650-00
Chr10	irgsp1_rep	five_prime_UTR	10341471	10341590	.	-	.	Parent=Os10t0345650-00
Chr10	irgsp1_rep	five_prime_UTR	10340479	10340612	.	-	.	Parent=Os10t0345650-00
Chr10	irgsp1_rep	five_prime_UTR	10338262	10338485	.	-	.	Parent=Os10t0345650-00
Chr10	irgsp1_rep	CDS	10337800	10338261	.	-	0	Parent=Os10t0345650-00
Chr10	irgsp1_rep	three_prime_UTR	10337464	10337799	.	-	.	Parent=Os10t0345650-00
Chr10	irgsp1_rep	mRNA	10341313	10342904	.	+	.	ID=Os10t0345701-01;Name=Os10t0345701-01;Locus_id=Os10g0345701;Note=Hypothetical conserved gene.;Transcript_evidence=AK240759 (DDBJ%2C Best hit);ORF_evidence=Q339L1 (UniProt);InterPro=Protein of unknown function DUF566 (IPR007573);NIAS_FLcDNA=J053045A20;TENOR=Os10t0345701-01;KEGG=Os10t0345701-01
Chr10	irgsp1_rep	five_prime_UTR	10341313	10341469	.	+	.	Parent=Os10t0345701-01
Chr10	irgsp1_rep	CDS	10341470	10341595	.	+	0	Parent=Os10t0345701-01
Chr10	irgsp1_rep	CDS	10341678	10341767	.	+	0	Parent=Os10t0345701-01
Chr10	irgsp1_rep	CDS	10342247	10342354	.	+	0	Parent=Os10t0345701-01
Chr10	irgsp1_rep	CDS	10342450	10342494	.	+	0	Parent=Os10t0345701-01
Chr10	irgsp1_rep	three_prime_UTR	10342495	10342904	.	+	.	Parent=Os10t0345701-01
Chr10	irgsp1_rep	mRNA	10357811	10358530	.	+	.	ID=Os10t0345900-01;Name=Os10t0345900-01;Locus_id=Os10g0345900;Note=Conserved hypothetical protein.;Transcript_evidence=AK120983 (DDBJ%2C Best hit);ORF_evidence=A2Z681 (UniProt);NIAS_FLcDNA=J023042D09;Expression=AK120983;TENOR=Os10t0345900-01;KEGG=Os10t0345900-01
Chr10	irgsp1_rep	five_prime_UTR	10357811	10357898	.	+	.	Parent=Os10t0345900-01
Chr10	irgsp1_rep	CDS	10357899	10357968	.	+	0	Parent=Os10t0345900-01
Chr10	irgsp1_rep	CDS	10358153	10358310	.	+	2	Parent=Os10t0345900-01
Chr10	irgsp1_rep	three_prime_UTR	10358311	10358530	.	+	.	Parent=Os10t0345900-01
Chr10	irgsp1_rep	mRNA	10382942	10388225	.	+	.	ID=Os10t0346200-01;Name=Os10t0346200-01;Locus_id=Os10g0346200;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=AK106542 (DDBJ%2C Best hit),AK073215 (DDBJ%2C Best hit),AK099084 (DDBJ%2C Best hit);ORF_evidence=NP_973461.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=002-108-E10,J033015K15,J023005I07;TENOR=Os10t0346200-01
Chr10	irgsp1_rep	five_prime_UTR	10382942	10383059	.	+	.	Parent=Os10t0346200-01
Chr10	irgsp1_rep	CDS	10383060	10383083	.	+	0	Parent=Os10t0346200-01
Chr10	irgsp1_rep	CDS	10383464	10383544	.	+	0	Parent=Os10t0346200-01
Chr10	irgsp1_rep	CDS	10384548	10384665	.	+	0	Parent=Os10t0346200-01
Chr10	irgsp1_rep	CDS	10384765	10384859	.	+	2	Parent=Os10t0346200-01
Chr10	irgsp1_rep	CDS	10385015	10385086	.	+	0	Parent=Os10t0346200-01
Chr10	irgsp1_rep	CDS	10385522	10385842	.	+	0	Parent=Os10t0346200-01
Chr10	irgsp1_rep	CDS	10385943	10386051	.	+	0	Parent=Os10t0346200-01
Chr10	irgsp1_rep	CDS	10386853	10387027	.	+	2	Parent=Os10t0346200-01
Chr10	irgsp1_rep	CDS	10387861	10387948	.	+	1	Parent=Os10t0346200-01
Chr10	irgsp1_rep	three_prime_UTR	10387949	10388225	.	+	.	Parent=Os10t0346200-01
Chr10	irgsp1_rep	mRNA	10390880	10396620	.	-	.	ID=Os10t0346300-01;Name=Os10t0346300-01;Locus_id=Os10g0346300;CGSNL Gene Symbol=LAC17;CGSNL Gene Name=LACCASE 17;Oryzabase Gene Symbol Synonym(s)=OsLAC17;Oryzabase Gene Name Synonym(s)=laccase 17;Note=Cupredoxin domain containing protein.;Transcript_evidence=AK110474 (DDBJ%2C Best hit);ORF_evidence=Q339K6 (UniProt);GO=Biological Process: lignin catabolic process (GO:0046274),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: apoplast (GO:0048046),Molecular Function: copper ion binding (GO:0005507),Molecular Function: laccase activity (GO:0008471),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Multicopper oxidase%2C type 1 (IPR001117),Multicopper oxidase%2C copper-binding site (IPR002355),Cupredoxin (IPR008972),Multicopper oxidase%2C type 2 (IPR011706),Multicopper oxidase%2C type 3 (IPR011707),Laccase (IPR017761);NIAS_FLcDNA=002-166-H06;Oryzabase=21618;Expression=AK110474;TENOR=Os10t0346300-01;KEGG=Os10t0346300-01
Chr10	irgsp1_rep	five_prime_UTR	10396566	10396620	.	-	.	Parent=Os10t0346300-01
Chr10	irgsp1_rep	CDS	10396428	10396565	.	-	0	Parent=Os10t0346300-01
Chr10	irgsp1_rep	CDS	10396157	10396308	.	-	0	Parent=Os10t0346300-01
Chr10	irgsp1_rep	CDS	10394718	10394965	.	-	1	Parent=Os10t0346300-01
Chr10	irgsp1_rep	CDS	10394395	10394514	.	-	2	Parent=Os10t0346300-01
Chr10	irgsp1_rep	CDS	10392535	10393554	.	-	2	Parent=Os10t0346300-01
Chr10	irgsp1_rep	CDS	10391314	10391435	.	-	2	Parent=Os10t0346300-01
Chr10	irgsp1_rep	three_prime_UTR	10390880	10391313	.	-	.	Parent=Os10t0346300-01
Chr10	irgsp1_rep	mRNA	10392539	10393534	.	+	.	ID=Os10t0346450-00;Name=Os10t0346450-00;Locus_id=Os10g0346450;Note=Hypothetical protein.;Transcript_evidence=tplb0051b23 (Wheat FLcDNA);ORF_evidence=GeneMark;TENOR=Os10t0346450-00
Chr10	irgsp1_rep	CDS	10392539	10393147	.	+	0	Parent=Os10t0346450-00
Chr10	irgsp1_rep	CDS	10393221	10393319	.	+	0	Parent=Os10t0346450-00
Chr10	irgsp1_rep	three_prime_UTR	10393320	10393534	.	+	.	Parent=Os10t0346450-00
Chr10	irgsp1_rep	mRNA	10411380	10418438	.	-	.	ID=Os10t0346600-00;Name=Os10t0346600-00;Locus_id=Os10g0346600;Note=Similar to Vacuolar sorting receptor 4 precursor (AtVSR4) (Epidermal growth factor receptor-like protein 2b) (AtELP2b) (BP80-like protein a) (AtBP80a).;Transcript_evidence=AK332395 (DDBJ);ORF_evidence=B6U4K3 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Protease-associated domain%2C PA (IPR003137),EGF-like calcium-binding%2C conserved site (IPR018097);TENOR=Os10t0346600-00;KEGG=Os10t0346600-00
Chr10	irgsp1_rep	five_prime_UTR	10418434	10418438	.	-	.	Parent=Os10t0346600-00
Chr10	irgsp1_rep	CDS	10418124	10418433	.	-	0	Parent=Os10t0346600-00
Chr10	irgsp1_rep	CDS	10416212	10416904	.	-	2	Parent=Os10t0346600-00
Chr10	irgsp1_rep	CDS	10415871	10415959	.	-	2	Parent=Os10t0346600-00
Chr10	irgsp1_rep	CDS	10415659	10415728	.	-	0	Parent=Os10t0346600-00
Chr10	irgsp1_rep	CDS	10415497	10415580	.	-	2	Parent=Os10t0346600-00
Chr10	irgsp1_rep	CDS	10415340	10415416	.	-	2	Parent=Os10t0346600-00
Chr10	irgsp1_rep	CDS	10415169	10415250	.	-	0	Parent=Os10t0346600-00
Chr10	irgsp1_rep	CDS	10414179	10414261	.	-	2	Parent=Os10t0346600-00
Chr10	irgsp1_rep	CDS	10414025	10414091	.	-	0	Parent=Os10t0346600-00
Chr10	irgsp1_rep	CDS	10412878	10413006	.	-	2	Parent=Os10t0346600-00
Chr10	irgsp1_rep	CDS	10412685	10412794	.	-	2	Parent=Os10t0346600-00
Chr10	irgsp1_rep	CDS	10411580	10411681	.	-	0	Parent=Os10t0346600-00
Chr10	irgsp1_rep	three_prime_UTR	10411570	10411579	.	-	.	Parent=Os10t0346600-00
Chr10	irgsp1_rep	three_prime_UTR	10411380	10411518	.	-	.	Parent=Os10t0346600-00
Chr10	irgsp1_rep	mRNA	10427700	10431861	.	-	.	ID=Os10t0347000-01;Name=Os10t0347000-01;Locus_id=Os10g0347000;Note=X8 domain containing protein.;Transcript_evidence=AK073552 (DDBJ%2C Best hit);ORF_evidence=Q109T7 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: cation binding (GO:0043169);InterPro=X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781);NIAS_FLcDNA=J033046G12;Expression=AK073552;TENOR=Os10t0347000-01;KEGG=Os10t0347000-01
Chr10	irgsp1_rep	five_prime_UTR	10431660	10431861	.	-	.	Parent=Os10t0347000-01
Chr10	irgsp1_rep	CDS	10431578	10431659	.	-	0	Parent=Os10t0347000-01
Chr10	irgsp1_rep	CDS	10429932	10430852	.	-	2	Parent=Os10t0347000-01
Chr10	irgsp1_rep	CDS	10428830	10428861	.	-	2	Parent=Os10t0347000-01
Chr10	irgsp1_rep	three_prime_UTR	10428801	10428829	.	-	.	Parent=Os10t0347000-01
Chr10	irgsp1_rep	three_prime_UTR	10427700	10428034	.	-	.	Parent=Os10t0347000-01
Chr10	irgsp1_rep	mRNA	10468883	10469344	.	+	.	ID=Os10t0347400-00;Name=Os10t0347400-00;Locus_id=Os10g0347400;Note=Conserved hypothetical protein.;Transcript_evidence=BT083761 (DDBJ);ORF_evidence=Q8H8K6 (UniProt);TENOR=Os10t0347400-00
Chr10	irgsp1_rep	CDS	10468883	10469344	.	+	0	Parent=Os10t0347400-00
Chr10	irgsp1_rep	mRNA	10482035	10486120	.	-	.	ID=Os10t0347800-00;Name=Os10t0347800-00;Locus_id=Os10g0347800;Oryzabase Gene Symbol Synonym(s)=OsFH4%2C FH4;Oryzabase Gene Name Synonym(s)=formin homology 4%2C forming family protein 4%2C FH2 protein 4%2C FH2 domain protein 4;Note=Similar to Formin-like protein 4.;Transcript_evidence=tplb0004b09 (Wheat FLcDNA);ORF_evidence=Q8H8K7 (UniProt);GO=Biological Process: cellular component organization (GO:0016043),Biological Process: actin cytoskeleton organization (GO:0030036),Molecular Function: actin binding (GO:0003779);InterPro=Actin-binding FH2/DRF autoregulatory (IPR003104),Actin-binding FH2 (IPR015425);Oryzabase=21776;TENOR=Os10t0347800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	10485371	10486120	.	-	0	Parent=Os10t0347800-00
Chr10	irgsp1_rep	CDS	10484609	10485189	.	-	0	Parent=Os10t0347800-00
Chr10	irgsp1_rep	CDS	10484312	10484514	.	-	1	Parent=Os10t0347800-00
Chr10	irgsp1_rep	CDS	10483532	10483773	.	-	2	Parent=Os10t0347800-00
Chr10	irgsp1_rep	CDS	10482035	10482826	.	-	0	Parent=Os10t0347800-00
Chr10	irgsp1_rep	mRNA	10530651	10533278	.	-	.	ID=Os10t0348600-01;Name=Os10t0348600-01;Locus_id=Os10g0348600;Note=Protein of unknown function DUF594 family protein.;Transcript_evidence=AK106921 (DDBJ%2C Best hit);ORF_evidence=B8BGC6 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);NIAS_FLcDNA=002-119-B05;Expression=AK106921;TENOR=Os10t0348600-01;KEGG=Os10t0348600-01
Chr10	irgsp1_rep	five_prime_UTR	10533241	10533278	.	-	.	Parent=Os10t0348600-01
Chr10	irgsp1_rep	five_prime_UTR	10533132	10533142	.	-	.	Parent=Os10t0348600-01
Chr10	irgsp1_rep	CDS	10530948	10533131	.	-	0	Parent=Os10t0348600-01
Chr10	irgsp1_rep	three_prime_UTR	10530651	10530947	.	-	.	Parent=Os10t0348600-01
Chr10	irgsp1_rep	mRNA	10539926	10544799	.	+	.	ID=Os10t0348900-01;Name=Os10t0348900-01;Locus_id=Os10g0348900;Note=Hypothetical protein.;Transcript_evidence=AK059264 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-025-A11;Expression=AK059264;TENOR=Os10t0348900-01;KEGG=Os10t0348900-01
Chr10	irgsp1_rep	five_prime_UTR	10539926	10540254	.	+	.	Parent=Os10t0348900-01
Chr10	irgsp1_rep	five_prime_UTR	10540506	10540566	.	+	.	Parent=Os10t0348900-01
Chr10	irgsp1_rep	five_prime_UTR	10543491	10543496	.	+	.	Parent=Os10t0348900-01
Chr10	irgsp1_rep	CDS	10543497	10543594	.	+	0	Parent=Os10t0348900-01
Chr10	irgsp1_rep	CDS	10544106	10544253	.	+	1	Parent=Os10t0348900-01
Chr10	irgsp1_rep	three_prime_UTR	10544254	10544799	.	+	.	Parent=Os10t0348900-01
Chr10	irgsp1_rep	mRNA	10563123	10563841	.	-	.	ID=Os10t0349300-01;Name=Os10t0349300-01;Locus_id=Os10g0349300;CGSNL Gene Symbol=HYPRP9;CGSNL Gene Name=HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 9;Oryzabase Gene Symbol Synonym(s)=OsHyPRP09%2C HyP/GRP09%2C OsHyPRP9%2C HyP/GRP9%2C OsHyPRP29%2C HyPRP29;Oryzabase Gene Name Synonym(s)=hybrid proline- or glycine-rich protein 9%2C Hybrid Proline-Rich Protein 29;Note=Similar to Root-specific protein (RCc2 protein).;Transcript_evidence=AK108560 (DDBJ%2C Best hit);ORF_evidence=Q42474 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=002-145-A10;Oryzabase=18610;Expression=AK108560;TENOR=Os10t0349300-01;KEGG=Os10t0349300-01
Chr10	irgsp1_rep	five_prime_UTR	10563761	10563841	.	-	.	Parent=Os10t0349300-01
Chr10	irgsp1_rep	CDS	10563347	10563760	.	-	0	Parent=Os10t0349300-01
Chr10	irgsp1_rep	three_prime_UTR	10563123	10563346	.	-	.	Parent=Os10t0349300-01
Chr10	irgsp1_rep	mRNA	10566488	10566901	.	-	.	ID=Os10t0349400-00;Name=Os10t0349400-00;Locus_id=Os10g0349400;CGSNL Gene Symbol=HYPRP10;CGSNL Gene Name=HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 10;Oryzabase Gene Symbol Synonym(s)=OsHyPRP10%2C HyP/GRP10%2C OsHyPRP30%2C HyPRP30;Oryzabase Gene Name Synonym(s)=hybrid proline- or glycine-rich protein 10%2C Hybrid Proline-Rich Protein 30;Note=Similar to cortical cell-delineating protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B6U436 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);Oryzabase=18611;TENOR=Os10t0349400-00;KEGG=Os10t0349400-00
Chr10	irgsp1_rep	CDS	10566488	10566901	.	-	0	Parent=Os10t0349400-00
Chr10	irgsp1_rep	mRNA	10573676	10573930	.	-	.	ID=Os10t0349600-00;Name=Os10t0349600-00;Locus_id=Os10g0349600;CGSNL Gene Symbol=HYPRP11;CGSNL Gene Name=HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 11;Oryzabase Gene Symbol Synonym(s)=OsHyPRP11%2C HyP/GRP11%2C OsHyPRP31%2C HyPRP31;Oryzabase Gene Name Synonym(s)=hybrid proline- or glycine-rich protein 11%2C Hybrid Proline-Rich Protein 31;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8LM49 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770);Oryzabase=18612;TENOR=Os10t0349600-00;KEGG=Os10t0349600-00
Chr10	irgsp1_rep	CDS	10573676	10573930	.	-	0	Parent=Os10t0349600-00
Chr10	irgsp1_rep	mRNA	10587298	10587959	.	-	.	ID=Os10t0349900-01;Name=Os10t0349900-01;Locus_id=Os10g0349900;CGSNL Gene Symbol=HYPRP12;CGSNL Gene Name=HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 12;Oryzabase Gene Symbol Synonym(s)=OsHyPRP12%2C HyP/GRP12%2C OsHyPRP32%2C HyPRP32;Oryzabase Gene Name Synonym(s)=hybrid proline- or glycine-rich protein 12%2C Hybrid Proline-Rich Protein 32;Note=Similar to NT16 polypeptide.;Transcript_evidence=AK062848 (DDBJ%2C Best hit);ORF_evidence=Q42474 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=001-107-H12;Oryzabase=18613;Expression=AK062848;TENOR=Os10t0349900-01;KEGG=Os10t0349900-01
Chr10	irgsp1_rep	five_prime_UTR	10587898	10587959	.	-	.	Parent=Os10t0349900-01
Chr10	irgsp1_rep	CDS	10587517	10587897	.	-	0	Parent=Os10t0349900-01
Chr10	irgsp1_rep	three_prime_UTR	10587298	10587516	.	-	.	Parent=Os10t0349900-01
Chr10	irgsp1_rep	mRNA	10590945	10591280	.	-	.	ID=Os10t0350001-00;Name=Os10t0350001-00;Locus_id=Os10g0350001;CGSNL Gene Symbol=RPS23A;CGSNL Gene Name=RIBOSOMAL PROTEIN S23A;Oryzabase Gene Symbol Synonym(s)=RPS23a%2C OsRPS23a;Oryzabase Gene Name Synonym(s)=ribosomal protein S23a%2C ribosomal protein small subunit 23a;Note=Similar to 40S ribosomal protein S23 (RPS23A).;Transcript_evidence=EU960725 (DDBJ);ORF_evidence=NP_566351.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S12/S23 (IPR006032),Nucleic acid-binding%2C OB-fold (IPR012340);Oryzabase=22184;TENOR=Os10t0350001-00
Chr10	irgsp1_rep	CDS	10591143	10591280	.	-	0	Parent=Os10t0350001-00
Chr10	irgsp1_rep	three_prime_UTR	10590945	10591142	.	-	.	Parent=Os10t0350001-00
Chr10	irgsp1_rep	mRNA	10615625	10626486	.	+	.	ID=Os10t0350100-00;Name=Os10t0350100-00;Locus_id=Os10g0350100;Note=Non-protein coding transcript.;Transcript_evidence=AK364776 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0350100-00
Chr10	irgsp1_rep	exon	10615625	10615743	.	+	.	Parent=Os10t0350100-00
Chr10	irgsp1_rep	exon	10626136	10626486	.	+	.	Parent=Os10t0350100-00
Chr10	irgsp1_rep	mRNA	10625908	10626435	.	-	.	ID=Os10t0350200-00;Name=Os10t0350200-00;Locus_id=Os10g0350200;Note=Similar to Myb-like DNA-binding domain containing protein.;Transcript_evidence=AJ601378 (DDBJ);ORF_evidence=Q10MG5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),MYB-like (IPR017877),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);TENOR=Os10t0350200-00
Chr10	irgsp1_rep	CDS	10625908	10626435	.	-	0	Parent=Os10t0350200-00
Chr10	irgsp1_rep	mRNA	10627301	10627924	.	+	.	ID=Os10t0350300-00;Name=Os10t0350300-00;Locus_id=Os10g0350300;Note=Non-protein coding transcript.;Transcript_evidence=AK364776 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0350300-00
Chr10	irgsp1_rep	exon	10627301	10627924	.	+	.	Parent=Os10t0350300-00
Chr10	irgsp1_rep	mRNA	10629434	10635114	.	-	.	ID=Os10t0350450-00;Name=Os10t0350450-00;Locus_id=Os10g0350450;Note=Similar to 40S ribosomal protein S23.;Transcript_evidence=FP093948 (DDBJ);ORF_evidence=B4FBY5 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S12/S23 (IPR006032),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);TENOR=Os10t0350450-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	10634857	10635114	.	-	0	Parent=Os10t0350450-00
Chr10	irgsp1_rep	CDS	10629663	10629817	.	-	0	Parent=Os10t0350450-00
Chr10	irgsp1_rep	CDS	10629434	10629581	.	-	1	Parent=Os10t0350450-00
Chr10	irgsp1_rep	mRNA	10637443	10641873	.	-	.	ID=Os10t0350500-01;Name=Os10t0350500-01;Locus_id=Os10g0350500;Note=Similar to mtn21-like protein.;Transcript_evidence=AK070298 (DDBJ%2C Best hit);ORF_evidence=XP_002328854.1 (RefSeq);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Nucleoside phosphatase GDA1/CD39 (IPR000407);NIAS_FLcDNA=J023050G19;TENOR=Os10t0350500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	10641443	10641873	.	-	.	Parent=Os10t0350500-01
Chr10	irgsp1_rep	five_prime_UTR	10640755	10640819	.	-	.	Parent=Os10t0350500-01
Chr10	irgsp1_rep	CDS	10638840	10640754	.	-	0	Parent=Os10t0350500-01
Chr10	irgsp1_rep	CDS	10637994	10638274	.	-	2	Parent=Os10t0350500-01
Chr10	irgsp1_rep	three_prime_UTR	10637443	10637993	.	-	.	Parent=Os10t0350500-01
Chr10	irgsp1_rep	mRNA	10653202	10654972	.	-	.	ID=Os10t0350800-01;Name=Os10t0350800-01;Locus_id=Os10g0350800;Note=Similar to predicted protein.;Transcript_evidence=AK241969 (DDBJ%2C Best hit);ORF_evidence=Q8S6I1 (UniProt);NIAS_FLcDNA=J075095N24;TENOR=Os10t0350800-01;KEGG=Os10t0350800-01
Chr10	irgsp1_rep	CDS	10654589	10654972	.	-	0	Parent=Os10t0350800-01
Chr10	irgsp1_rep	CDS	10654007	10654177	.	-	0	Parent=Os10t0350800-01
Chr10	irgsp1_rep	three_prime_UTR	10653935	10654006	.	-	.	Parent=Os10t0350800-01
Chr10	irgsp1_rep	three_prime_UTR	10653202	10653427	.	-	.	Parent=Os10t0350800-01
Chr10	irgsp1_rep	mRNA	10662372	10666218	.	-	.	ID=Os10t0351200-00;Name=Os10t0351200-00;Locus_id=Os10g0351200;Note=Similar to CytoChrome P450 family protein%2C expressed.;Transcript_evidence=AK366502 (DDBJ);ORF_evidence=Q339I4 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os10t0351200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	10665292	10666218	.	-	0	Parent=Os10t0351200-00
Chr10	irgsp1_rep	CDS	10662425	10663054	.	-	0	Parent=Os10t0351200-00
Chr10	irgsp1_rep	three_prime_UTR	10662372	10662424	.	-	.	Parent=Os10t0351200-00
Chr10	irgsp1_rep	mRNA	10670415	10673456	.	+	.	ID=Os10t0351414-00;Name=Os10t0351414-00;Locus_id=Os10g0351414;Note=Endonuclease/exonuclease/phosphatase domain containing protein.;Transcript_evidence=tplb0014n19 (Wheat FLcDNA);ORF_evidence=NP_001057661.2 (RefSeq);InterPro=Endonuclease/exonuclease/phosphatase (IPR005135);TENOR=Os10t0351414-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	10670415	10671557	.	+	0	Parent=Os10t0351414-00
Chr10	irgsp1_rep	three_prime_UTR	10671558	10673456	.	+	.	Parent=Os10t0351414-00
Chr10	irgsp1_rep	mRNA	10687370	10688070	.	-	.	ID=Os10t0351457-00;Name=Os10t0351457-00;Locus_id=Os10g0351457;Note=Non-protein coding transcript.;Transcript_evidence=CT836542 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os10t0351457-00
Chr10	irgsp1_rep	exon	10687793	10688070	.	-	.	Parent=Os10t0351457-00
Chr10	irgsp1_rep	exon	10687370	10687780	.	-	.	Parent=Os10t0351457-00
Chr10	irgsp1_rep	mRNA	10699268	10701907	.	+	.	ID=Os10t0351500-01;Name=Os10t0351500-01;Locus_id=Os10g0351500;Note=Tyrosine protein kinase domain containing protein.;Transcript_evidence=AK102659 (DDBJ%2C Best hit);ORF_evidence=NP_001147483.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J033101I15;Expression=AK102659;TENOR=Os10t0351500-01;KEGG=Os10t0351500-01
Chr10	irgsp1_rep	five_prime_UTR	10699268	10699455	.	+	.	Parent=Os10t0351500-01
Chr10	irgsp1_rep	CDS	10699456	10700293	.	+	0	Parent=Os10t0351500-01
Chr10	irgsp1_rep	CDS	10700375	10700458	.	+	2	Parent=Os10t0351500-01
Chr10	irgsp1_rep	CDS	10700553	10701625	.	+	2	Parent=Os10t0351500-01
Chr10	irgsp1_rep	three_prime_UTR	10701626	10701907	.	+	.	Parent=Os10t0351500-01
Chr10	irgsp1_rep	mRNA	10713390	10715541	.	+	.	ID=Os10t0351600-00;Name=Os10t0351600-00;Locus_id=Os10g0351600;Note=Glycoside hydrolase%2C family 10 domain containing protein.;Transcript_evidence=AK375755 (DDBJ);ORF_evidence=NP_001064414.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 10 (IPR001000),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);TENOR=Os10t0351600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	10713390	10713741	.	+	0	Parent=Os10t0351600-00
Chr10	irgsp1_rep	CDS	10714044	10715104	.	+	2	Parent=Os10t0351600-00
Chr10	irgsp1_rep	CDS	10715191	10715541	.	+	0	Parent=Os10t0351600-00
Chr10	irgsp1_rep	mRNA	10727319	10730929	.	+	.	ID=Os10t0351700-01;Name=Os10t0351700-01;Locus_id=Os10g0351700;Note=Similar to Glycosyl hydrolase family 10 protein%2C expressed.;Transcript_evidence=AK070631 (DDBJ%2C Best hit);ORF_evidence=Q10QC1 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 10 (IPR001000),Galactose-binding domain-like (IPR008979),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J023056A20;TENOR=Os10t0351700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	10727319	10727358	.	+	.	Parent=Os10t0351700-01
Chr10	irgsp1_rep	CDS	10727359	10727416	.	+	0	Parent=Os10t0351700-01
Chr10	irgsp1_rep	CDS	10727600	10727644	.	+	2	Parent=Os10t0351700-01
Chr10	irgsp1_rep	CDS	10728187	10728429	.	+	2	Parent=Os10t0351700-01
Chr10	irgsp1_rep	CDS	10728545	10728711	.	+	2	Parent=Os10t0351700-01
Chr10	irgsp1_rep	CDS	10728804	10729184	.	+	0	Parent=Os10t0351700-01
Chr10	irgsp1_rep	CDS	10729550	10730050	.	+	0	Parent=Os10t0351700-01
Chr10	irgsp1_rep	CDS	10730385	10730735	.	+	0	Parent=Os10t0351700-01
Chr10	irgsp1_rep	three_prime_UTR	10730736	10730929	.	+	.	Parent=Os10t0351700-01
Chr10	irgsp1_rep	mRNA	10748919	10751558	.	-	.	ID=Os10t0352000-01;Name=Os10t0352000-01;Locus_id=Os10g0352000;Note=Conserved hypothetical protein.;Transcript_evidence=AK111096 (DDBJ%2C Best hit);ORF_evidence=Q8RUK1 (UniProt);NIAS_FLcDNA=002-175-G08;Expression=AK111096;TENOR=Os10t0352000-01;KEGG=Os10t0352000-01
Chr10	irgsp1_rep	five_prime_UTR	10751557	10751558	.	-	.	Parent=Os10t0352000-01
Chr10	irgsp1_rep	CDS	10751394	10751556	.	-	0	Parent=Os10t0352000-01
Chr10	irgsp1_rep	CDS	10751159	10751295	.	-	2	Parent=Os10t0352000-01
Chr10	irgsp1_rep	CDS	10749176	10749373	.	-	0	Parent=Os10t0352000-01
Chr10	irgsp1_rep	three_prime_UTR	10748919	10749175	.	-	.	Parent=Os10t0352000-01
Chr10	irgsp1_rep	mRNA	10753134	10753893	.	-	.	ID=Os10t0352200-01;Name=Os10t0352200-01;Locus_id=Os10g0352200;Note=Conserved hypothetical protein.;Transcript_evidence=AK111071 (DDBJ%2C Best hit);ORF_evidence=B9G5B6 (UniProt);NIAS_FLcDNA=002-175-E06;Expression=AK111071;TENOR=Os10t0352200-01;KEGG=Os10t0352200-01
Chr10	irgsp1_rep	five_prime_UTR	10753893	10753893	.	-	.	Parent=Os10t0352200-01
Chr10	irgsp1_rep	CDS	10753558	10753892	.	-	0	Parent=Os10t0352200-01
Chr10	irgsp1_rep	CDS	10753440	10753464	.	-	1	Parent=Os10t0352200-01
Chr10	irgsp1_rep	three_prime_UTR	10753134	10753439	.	-	.	Parent=Os10t0352200-01
Chr10	irgsp1_rep	mRNA	10766629	10768150	.	-	.	ID=Os10t0352500-01;Name=Os10t0352500-01;Locus_id=Os10g0352500;Note=Similar to cDNA clone:J013022N21%2C full insert sequence.;Transcript_evidence=AK288183 (DDBJ%2C Best hit);ORF_evidence=B7EAX3 (UniProt);NIAS_FLcDNA=J090005N15;TENOR=Os10t0352500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	10768015	10768150	.	-	.	Parent=Os10t0352500-01
Chr10	irgsp1_rep	CDS	10767727	10768014	.	-	0	Parent=Os10t0352500-01
Chr10	irgsp1_rep	three_prime_UTR	10766629	10767726	.	-	.	Parent=Os10t0352500-01
Chr10	irgsp1_rep	mRNA	10858911	10860173	.	-	.	ID=Os10t0355800-00;Name=Os10t0355800-00;Locus_id=Os10g0355800;Oryzabase Gene Symbol Synonym(s)=AtpB;Oryzabase Gene Name Synonym(s)=ATP synthase subunit beta;Note=Similar to ATP synthase CF1 beta subunit.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_039390.1 (RefSeq);GO=Biological Process: ATP synthesis coupled proton transport (GO:0015986),Biological Process: ATP hydrolysis coupled proton transport (GO:0015991),Biological Process: proton transport (GO:0015992),Biological Process: ATP metabolic process (GO:0046034),Cellular Component: proton-transporting two-sector ATPase complex (GO:0016469),Cellular Component: proton-transporting two-sector ATPase complex%2C catalytic domain (GO:0033178),Cellular Component: proton-transporting ATP synthase complex%2C catalytic core F(1) (GO:0045261),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrogen-exporting ATPase activity%2C phosphorylative mechanism (GO:0008553),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C catalyzing transmembrane movement of substances (GO:0016820),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: hydrogen ion transporting ATP synthase activity%2C rotational mechanism (GO:0046933),Molecular Function: proton-transporting ATPase activity%2C rotational mechanism (GO:0046961);InterPro=ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C nucleotide-binding domain (IPR000194),ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C C-terminal (IPR000793),ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C F1 complex%2C beta subunit (IPR005722),ATPase%2C F1/A1 complex%2C alpha/beta subunit%2C N-terminal (IPR018118),ATPase%2C F1 complex beta subunit/V1 complex%2C C-terminal (IPR024034);Oryzabase=21868;TENOR=Os10t0355800-00
Chr10	irgsp1_rep	CDS	10858911	10860173	.	-	0	Parent=Os10t0355800-00
Chr10	irgsp1_rep	mRNA	10861205	10862638	.	+	.	ID=Os10t0356000-00;Name=Os10t0356000-00;Locus_id=Os10g0356000;Oryzabase Gene Symbol Synonym(s)=OsrbcL1%2C rbcL1;Oryzabase Gene Name Synonym(s)=ribulose bisphosphate carboxylase large chain 1;Note=Similar to ribulose-1%2C5-bisphosphate carboxylase/oxygenase large subunit.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_039391.1 (RefSeq);GO=Biological Process: carbon fixation (GO:0015977),Cellular Component: plastid (GO:0009536),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: ribulose-bisphosphate carboxylase activity (GO:0016984);InterPro=Ribulose bisphosphate carboxylase%2C large subunit%2C C-terminal (IPR000685),Ribulose bisphosphate carboxylase%2C large subunit%2C ferrodoxin-like N-terminal (IPR017443),Ribulose bisphosphate carboxylase%2C large subunit%2C N-terminal (IPR017444),Ribulose bisphosphate carboxylase%2C large chain%2C active site (IPR020878);Oryzabase=19245;TENOR=Os10t0356000-00
Chr10	irgsp1_rep	CDS	10861205	10862638	.	+	0	Parent=Os10t0356000-00
Chr10	irgsp1_rep	mRNA	10928348	10931710	.	-	.	ID=Os10t0357700-01;Name=Os10t0357700-01;Locus_id=Os10g0357700;Note=Conserved hypothetical protein.;Transcript_evidence=AK106693 (DDBJ%2C Best hit);ORF_evidence=NP_001053142.1 (RefSeq);NIAS_FLcDNA=002-114-C11;Expression=AK106693;TENOR=Os10t0357700-01;KEGG=Os10t0357700-01
Chr10	irgsp1_rep	five_prime_UTR	10931151	10931710	.	-	.	Parent=Os10t0357700-01
Chr10	irgsp1_rep	five_prime_UTR	10930934	10931020	.	-	.	Parent=Os10t0357700-01
Chr10	irgsp1_rep	five_prime_UTR	10930797	10930850	.	-	.	Parent=Os10t0357700-01
Chr10	irgsp1_rep	CDS	10930758	10930796	.	-	0	Parent=Os10t0357700-01
Chr10	irgsp1_rep	CDS	10930315	10930456	.	-	0	Parent=Os10t0357700-01
Chr10	irgsp1_rep	CDS	10930173	10930225	.	-	2	Parent=Os10t0357700-01
Chr10	irgsp1_rep	three_prime_UTR	10928348	10929243	.	-	.	Parent=Os10t0357700-01
Chr10	irgsp1_rep	mRNA	10932181	10938990	.	+	.	ID=Os10t0357800-01;Name=Os10t0357800-01;Locus_id=Os10g0357800;Note=N2%2CN2-dimethylguanosine tRNA methyltransferase family protein.;Transcript_evidence=AK064907 (DDBJ%2C Best hit);ORF_evidence=NP_197085.2 (RefSeq);GO=Biological Process: tRNA processing (GO:0008033),Molecular Function: RNA binding (GO:0003723),Molecular Function: tRNA (guanine-N2-)-methyltransferase activity (GO:0004809);InterPro=N2%2CN2-dimethylguanosine tRNA methyltransferase (IPR002905);NIAS_FLcDNA=J013000L24;Expression=AK064907;TENOR=Os10t0357800-01;KEGG=Os10t0357800-01
Chr10	irgsp1_rep	five_prime_UTR	10932181	10932241	.	+	.	Parent=Os10t0357800-01
Chr10	irgsp1_rep	CDS	10932242	10932466	.	+	0	Parent=Os10t0357800-01
Chr10	irgsp1_rep	CDS	10932887	10932971	.	+	0	Parent=Os10t0357800-01
Chr10	irgsp1_rep	CDS	10933074	10933192	.	+	2	Parent=Os10t0357800-01
Chr10	irgsp1_rep	CDS	10933492	10933579	.	+	0	Parent=Os10t0357800-01
Chr10	irgsp1_rep	CDS	10933719	10933840	.	+	2	Parent=Os10t0357800-01
Chr10	irgsp1_rep	CDS	10935168	10935307	.	+	0	Parent=Os10t0357800-01
Chr10	irgsp1_rep	CDS	10935386	10935458	.	+	1	Parent=Os10t0357800-01
Chr10	irgsp1_rep	CDS	10935535	10935623	.	+	0	Parent=Os10t0357800-01
Chr10	irgsp1_rep	CDS	10935744	10935849	.	+	1	Parent=Os10t0357800-01
Chr10	irgsp1_rep	CDS	10935924	10936136	.	+	0	Parent=Os10t0357800-01
Chr10	irgsp1_rep	CDS	10937596	10937790	.	+	0	Parent=Os10t0357800-01
Chr10	irgsp1_rep	CDS	10937873	10937950	.	+	0	Parent=Os10t0357800-01
Chr10	irgsp1_rep	CDS	10938748	10938882	.	+	0	Parent=Os10t0357800-01
Chr10	irgsp1_rep	three_prime_UTR	10938883	10938990	.	+	.	Parent=Os10t0357800-01
Chr10	irgsp1_rep	mRNA	10937733	10939891	.	-	.	ID=Os10t0357850-01;Name=Os10t0357850-01;Locus_id=Os10g0357850;Note=Hypothetical gene.;Transcript_evidence=AK288975 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090085J12;TENOR=Os10t0357850-01;KEGG=Os10t0357850-01
Chr10	irgsp1_rep	five_prime_UTR	10939286	10939891	.	-	.	Parent=Os10t0357850-01
Chr10	irgsp1_rep	CDS	10939061	10939285	.	-	0	Parent=Os10t0357850-01
Chr10	irgsp1_rep	three_prime_UTR	10937733	10939060	.	-	.	Parent=Os10t0357850-01
Chr10	irgsp1_rep	mRNA	10947985	10951135	.	+	.	ID=Os10t0358100-01;Name=Os10t0358100-01;Locus_id=Os10g0358100;Note=Non-protein coding transcript.;Transcript_evidence=AK106577 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-111-C06;TENOR=Os10t0358100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	exon	10947985	10951135	.	+	.	Parent=Os10t0358100-01
Chr10	irgsp1_rep	mRNA	10951397	10953601	.	-	.	ID=Os10t0358150-01;Name=Os10t0358150-01;Locus_id=Os10g0358150;Note=Conserved hypothetical protein.;Transcript_evidence=AK288236 (DDBJ%2C Best hit);ORF_evidence=B9FQZ7 (UniProt);NIAS_FLcDNA=J090013E07;TENOR=Os10t0358150-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	10952691	10953601	.	-	.	Parent=Os10t0358150-01
Chr10	irgsp1_rep	CDS	10952490	10952690	.	-	0	Parent=Os10t0358150-01
Chr10	irgsp1_rep	three_prime_UTR	10951397	10952489	.	-	.	Parent=Os10t0358150-01
Chr10	irgsp1_rep	mRNA	10956338	10959148	.	+	.	ID=Os10t0358200-00;Name=Os10t0358200-00;Locus_id=Os10g0358200;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=AK364617 (DDBJ);ORF_evidence=Q2QZP0 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os10t0358200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	10956338	10956346	.	+	.	Parent=Os10t0358200-00
Chr10	irgsp1_rep	CDS	10956347	10959148	.	+	0	Parent=Os10t0358200-00
Chr10	irgsp1_rep	mRNA	10988339	10992663	.	+	.	ID=Os10t0358600-01;Name=Os10t0358600-01;Locus_id=Os10g0358600;Note=Similar to OSIGBa0136O08-OSIGBa0153H12.4 protein.;Transcript_evidence=AK068930 (DDBJ%2C Best hit);ORF_evidence=Q01HC0 (UniProt);InterPro=Histone deacetylase complex subunit SAP30/SAP30-like (IPR024145);NIAS_FLcDNA=J023001K18;TENOR=Os10t0358600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	10988339	10988432	.	+	.	Parent=Os10t0358600-01
Chr10	irgsp1_rep	five_prime_UTR	10988553	10988931	.	+	.	Parent=Os10t0358600-01
Chr10	irgsp1_rep	CDS	10988932	10989102	.	+	0	Parent=Os10t0358600-01
Chr10	irgsp1_rep	CDS	10991098	10991224	.	+	0	Parent=Os10t0358600-01
Chr10	irgsp1_rep	CDS	10991621	10991763	.	+	2	Parent=Os10t0358600-01
Chr10	irgsp1_rep	CDS	10991979	10992041	.	+	0	Parent=Os10t0358600-01
Chr10	irgsp1_rep	CDS	10992125	10992190	.	+	0	Parent=Os10t0358600-01
Chr10	irgsp1_rep	CDS	10992300	10992377	.	+	0	Parent=Os10t0358600-01
Chr10	irgsp1_rep	three_prime_UTR	10992378	10992663	.	+	.	Parent=Os10t0358600-01
Chr10	irgsp1_rep	mRNA	10991287	10997385	.	-	.	ID=Os10t0358700-01;Name=Os10t0358700-01;Locus_id=Os10g0358700;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK101176 (DDBJ%2C Best hit);ORF_evidence=B8BGE8 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033029A13;Expression=AK101176;TENOR=Os10t0358700-01;KEGG=Os10t0358700-01
Chr10	irgsp1_rep	five_prime_UTR	10997361	10997385	.	-	.	Parent=Os10t0358700-01
Chr10	irgsp1_rep	CDS	10996697	10997360	.	-	0	Parent=Os10t0358700-01
Chr10	irgsp1_rep	CDS	10994899	10995881	.	-	2	Parent=Os10t0358700-01
Chr10	irgsp1_rep	three_prime_UTR	10994815	10994898	.	-	.	Parent=Os10t0358700-01
Chr10	irgsp1_rep	three_prime_UTR	10993380	10993511	.	-	.	Parent=Os10t0358700-01
Chr10	irgsp1_rep	three_prime_UTR	10993232	10993294	.	-	.	Parent=Os10t0358700-01
Chr10	irgsp1_rep	three_prime_UTR	10991287	10993096	.	-	.	Parent=Os10t0358700-01
Chr10	irgsp1_rep	mRNA	10994739	10997383	.	-	.	ID=Os10t0358700-02;Name=Os10t0358700-02;Locus_id=Os10g0358700;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK065104 (DDBJ%2C Best hit);ORF_evidence=B8BGE8 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013001N10;Expression=AK065104;TENOR=Os10t0358700-02;KEGG=Os10t0358700-02
Chr10	irgsp1_rep	five_prime_UTR	10997361	10997383	.	-	.	Parent=Os10t0358700-02
Chr10	irgsp1_rep	CDS	10996697	10997360	.	-	0	Parent=Os10t0358700-02
Chr10	irgsp1_rep	CDS	10994899	10995881	.	-	2	Parent=Os10t0358700-02
Chr10	irgsp1_rep	three_prime_UTR	10994739	10994898	.	-	.	Parent=Os10t0358700-02
Chr10	irgsp1_rep	mRNA	10992893	10997360	.	-	.	ID=Os10t0358700-03;Name=Os10t0358700-03;Locus_id=Os10g0358700;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK099994 (DDBJ%2C Best hit);ORF_evidence=B8BGE8 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013132H24;Expression=AK099994;TENOR=Os10t0358700-03;KEGG=Os10t0358700-03
Chr10	irgsp1_rep	CDS	10996697	10997360	.	-	0	Parent=Os10t0358700-03
Chr10	irgsp1_rep	CDS	10994899	10995881	.	-	2	Parent=Os10t0358700-03
Chr10	irgsp1_rep	three_prime_UTR	10994815	10994898	.	-	.	Parent=Os10t0358700-03
Chr10	irgsp1_rep	three_prime_UTR	10993380	10993511	.	-	.	Parent=Os10t0358700-03
Chr10	irgsp1_rep	three_prime_UTR	10993232	10993294	.	-	.	Parent=Os10t0358700-03
Chr10	irgsp1_rep	three_prime_UTR	10992893	10993096	.	-	.	Parent=Os10t0358700-03
Chr10	irgsp1_rep	mRNA	11026529	11027829	.	+	.	ID=Os10t0359200-00;Name=Os10t0359200-00;Locus_id=Os10g0359200;Note=Similar to UPF0496 protein 1.;Transcript_evidence=AK365984 (DDBJ);ORF_evidence=A2XDK8 (UniProt);InterPro=Protein of unknown function DUF677 (IPR007749);TENOR=Os10t0359200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	11026529	11026549	.	+	.	Parent=Os10t0359200-00
Chr10	irgsp1_rep	CDS	11026550	11027686	.	+	0	Parent=Os10t0359200-00
Chr10	irgsp1_rep	three_prime_UTR	11027687	11027829	.	+	.	Parent=Os10t0359200-00
Chr10	irgsp1_rep	mRNA	11035676	11040596	.	-	.	ID=Os10t0359500-01;Name=Os10t0359500-01;Locus_id=Os10g0359500;CGSNL Gene Symbol=NAC61;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 61;Oryzabase Gene Symbol Synonym(s)=ONAC061%2C ONAC61;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 061%2C NAC domain-containing protein 61;Note=No apical meristem (NAM) protein domain containing protein.;Transcript_evidence=AK072682 (DDBJ%2C Best hit);ORF_evidence=Q339G0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=J023135B15;Oryzabase=11490;Expression=AK072682;TENOR=Os10t0359500-01;KEGG=Os10t0359500-01
Chr10	irgsp1_rep	five_prime_UTR	11040404	11040596	.	-	.	Parent=Os10t0359500-01
Chr10	irgsp1_rep	five_prime_UTR	11039310	11039316	.	-	.	Parent=Os10t0359500-01
Chr10	irgsp1_rep	CDS	11039144	11039309	.	-	0	Parent=Os10t0359500-01
Chr10	irgsp1_rep	CDS	11037798	11038045	.	-	2	Parent=Os10t0359500-01
Chr10	irgsp1_rep	CDS	11037540	11037701	.	-	0	Parent=Os10t0359500-01
Chr10	irgsp1_rep	CDS	11036863	11037193	.	-	0	Parent=Os10t0359500-01
Chr10	irgsp1_rep	CDS	11036148	11036422	.	-	2	Parent=Os10t0359500-01
Chr10	irgsp1_rep	three_prime_UTR	11035676	11036147	.	-	.	Parent=Os10t0359500-01
Chr10	irgsp1_rep	mRNA	11044253	11044825	.	+	.	ID=Os10t0359700-01;Name=Os10t0359700-01;Locus_id=Os10g0359700;Note=Hypothetical gene.;Transcript_evidence=AK241167 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065116O14;TENOR=Os10t0359700-01;KEGG=Os10t0359700-01
Chr10	irgsp1_rep	CDS	11044253	11044642	.	+	0	Parent=Os10t0359700-01
Chr10	irgsp1_rep	three_prime_UTR	11044643	11044825	.	+	.	Parent=Os10t0359700-01
Chr10	irgsp1_rep	mRNA	11051332	11052064	.	-	.	ID=Os10t0359801-00;Name=Os10t0359801-00;Locus_id=Os10g0359801;Note=Conserved hypothetical protein.;Transcript_evidence=FP098665 (DDBJ);ORF_evidence=B9F4N2 (UniProt);TENOR=Os10t0359801-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	11051794	11052064	.	-	.	Parent=Os10t0359801-00
Chr10	irgsp1_rep	CDS	11051332	11051793	.	-	0	Parent=Os10t0359801-00
Chr10	irgsp1_rep	mRNA	11053048	11057745	.	-	.	ID=Os10t0360100-01;Name=Os10t0360100-01;Locus_id=Os10g0360100;Note=Similar to Sugar transporter protein.;Transcript_evidence=AK121279 (DDBJ%2C Best hit);ORF_evidence=NP_001151390.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J023108G21;Expression=AK121279;TENOR=Os10t0360100-01;KEGG=Os10t0360100-01
Chr10	irgsp1_rep	five_prime_UTR	11057606	11057745	.	-	.	Parent=Os10t0360100-01
Chr10	irgsp1_rep	five_prime_UTR	11055082	11055137	.	-	.	Parent=Os10t0360100-01
Chr10	irgsp1_rep	CDS	11054988	11055081	.	-	0	Parent=Os10t0360100-01
Chr10	irgsp1_rep	CDS	11053329	11054755	.	-	2	Parent=Os10t0360100-01
Chr10	irgsp1_rep	three_prime_UTR	11053048	11053328	.	-	.	Parent=Os10t0360100-01
Chr10	irgsp1_rep	mRNA	11054800	11056766	.	-	.	ID=Os10t0360100-02;Name=Os10t0360100-02;Locus_id=Os10g0360100;Note=Conserved hypothetical protein.;Transcript_evidence=AK106326 (DDBJ%2C Best hit);ORF_evidence=Q9AUM9 (UniProt);NIAS_FLcDNA=002-101-F02;TENOR=Os10t0360100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	11055804	11056766	.	-	.	Parent=Os10t0360100-02
Chr10	irgsp1_rep	CDS	11055504	11055803	.	-	0	Parent=Os10t0360100-02
Chr10	irgsp1_rep	three_prime_UTR	11054800	11055503	.	-	.	Parent=Os10t0360100-02
Chr10	irgsp1_rep	mRNA	11053193	11054778	.	+	.	ID=Os10t0360175-00;Name=Os10t0360175-00;Locus_id=Os10g0360175;Note=Hypothetical gene.;Transcript_evidence=CT830724 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os10t0360175-00;KEGG=Os10t0360175-00
Chr10	irgsp1_rep	five_prime_UTR	11053193	11053995	.	+	.	Parent=Os10t0360175-00
Chr10	irgsp1_rep	CDS	11053996	11054367	.	+	0	Parent=Os10t0360175-00
Chr10	irgsp1_rep	three_prime_UTR	11054368	11054778	.	+	.	Parent=Os10t0360175-00
Chr10	irgsp1_rep	mRNA	11079972	11087253	.	+	.	ID=Os10t0360600-01;Name=Os10t0360600-01;Locus_id=Os10g0360600;Note=Non-protein coding transcript.;Transcript_evidence=AK063055 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-110-F03;TENOR=Os10t0360600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	exon	11079972	11080095	.	+	.	Parent=Os10t0360600-01
Chr10	irgsp1_rep	exon	11086814	11087253	.	+	.	Parent=Os10t0360600-01
Chr10	irgsp1_rep	mRNA	11088189	11091676	.	+	.	ID=Os10t0360800-00;Name=Os10t0360800-00;Locus_id=Os10g0360800;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK367291 (DDBJ);ORF_evidence=A3C3Z2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os10t0360800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	11088189	11091063	.	+	0	Parent=Os10t0360800-00
Chr10	irgsp1_rep	CDS	11091291	11091676	.	+	2	Parent=Os10t0360800-00
Chr10	irgsp1_rep	mRNA	11088021	11098028	.	-	.	ID=Os10t0360900-01;Name=Os10t0360900-01;Locus_id=Os10g0360900;Note=Hypothetical protein.;Transcript_evidence=AK121933 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J033106P08;TENOR=Os10t0360900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	11097929	11098028	.	-	.	Parent=Os10t0360900-01
Chr10	irgsp1_rep	five_prime_UTR	11097630	11097666	.	-	.	Parent=Os10t0360900-01
Chr10	irgsp1_rep	CDS	11097565	11097629	.	-	0	Parent=Os10t0360900-01
Chr10	irgsp1_rep	CDS	11097089	11097156	.	-	1	Parent=Os10t0360900-01
Chr10	irgsp1_rep	CDS	11096183	11096323	.	-	2	Parent=Os10t0360900-01
Chr10	irgsp1_rep	CDS	11095108	11095149	.	-	2	Parent=Os10t0360900-01
Chr10	irgsp1_rep	CDS	11094519	11094652	.	-	2	Parent=Os10t0360900-01
Chr10	irgsp1_rep	CDS	11094310	11094408	.	-	0	Parent=Os10t0360900-01
Chr10	irgsp1_rep	CDS	11094097	11094225	.	-	0	Parent=Os10t0360900-01
Chr10	irgsp1_rep	three_prime_UTR	11094043	11094096	.	-	.	Parent=Os10t0360900-01
Chr10	irgsp1_rep	three_prime_UTR	11088021	11090414	.	-	.	Parent=Os10t0360900-01
Chr10	irgsp1_rep	mRNA	11088015	11088654	.	-	.	ID=Os10t0360900-02;Name=Os10t0360900-02;Locus_id=Os10g0360900;Note=Hypothetical gene.;Transcript_evidence=AK063230 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-112-F04;TENOR=Os10t0360900-02;KEGG=Os10t0360900-02
Chr10	irgsp1_rep	five_prime_UTR	11088473	11088654	.	-	.	Parent=Os10t0360900-02
Chr10	irgsp1_rep	CDS	11088146	11088472	.	-	0	Parent=Os10t0360900-02
Chr10	irgsp1_rep	three_prime_UTR	11088015	11088145	.	-	.	Parent=Os10t0360900-02
Chr10	irgsp1_rep	mRNA	11110251	11110999	.	+	.	ID=Os10t0361000-01;Name=Os10t0361000-01;Locus_id=Os10g0361000;Oryzabase Gene Name Synonym(s)=Dehydration stress-induced protein;Note=Lipoxygenase%2C LH2 domain containing protein.;Transcript_evidence=AK058583 (DDBJ%2C Best hit);ORF_evidence=A2Z6D8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Lipoxygenase%2C LH2 (IPR001024),Lipase/lipooxygenase%2C PLAT/LH2 (IPR008976),Embryo-specific 3 (IPR010417);NIAS_FLcDNA=001-017-F11;Oryzabase=19111;Expression=AK058583;TENOR=Os10t0361000-01;KEGG=Os10t0361000-01
Chr10	irgsp1_rep	five_prime_UTR	11110251	11110312	.	+	.	Parent=Os10t0361000-01
Chr10	irgsp1_rep	CDS	11110313	11110807	.	+	0	Parent=Os10t0361000-01
Chr10	irgsp1_rep	three_prime_UTR	11110808	11110999	.	+	.	Parent=Os10t0361000-01
Chr10	irgsp1_rep	mRNA	11124394	11124885	.	+	.	ID=Os10t0361300-00;Name=Os10t0361300-00;Locus_id=Os10g0361300;Note=Lipoxygenase%2C LH2 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001176107.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Lipoxygenase%2C LH2 (IPR001024),Lipase/lipooxygenase%2C PLAT/LH2 (IPR008976),Embryo-specific 3 (IPR010417);TENOR=Os10t0361300-00;KEGG=Os10t0361300-00
Chr10	irgsp1_rep	CDS	11124394	11124885	.	+	0	Parent=Os10t0361300-00
Chr10	irgsp1_rep	mRNA	11129277	11130058	.	-	.	ID=Os10t0361375-00;Name=Os10t0361375-00;Locus_id=Os10g0361375;Note=Hypothetical conserved gene.;Transcript_evidence=AK241423 (DDBJ%2C Secondary hit);ORF_evidence=Q339F0 (UniProt);TENOR=Os10t0361375-00;KEGG=Os10t0361375-00
Chr10	irgsp1_rep	five_prime_UTR	11129681	11130058	.	-	.	Parent=Os10t0361375-00
Chr10	irgsp1_rep	CDS	11129576	11129680	.	-	0	Parent=Os10t0361375-00
Chr10	irgsp1_rep	three_prime_UTR	11129277	11129575	.	-	.	Parent=Os10t0361375-00
Chr10	irgsp1_rep	mRNA	11176582	11181022	.	+	.	ID=Os10t0361876-01;Name=Os10t0361876-01;Locus_id=Os10g0361876;Note=Conserved hypothetical protein.;Transcript_evidence=AK242311 (DDBJ%2C Best hit);ORF_evidence=NP_001176109.1 (RefSeq);NIAS_FLcDNA=J075194N16;TENOR=Os10t0361876-01
Chr10	irgsp1_rep	five_prime_UTR	11176582	11176756	.	+	.	Parent=Os10t0361876-01
Chr10	irgsp1_rep	CDS	11176757	11177032	.	+	0	Parent=Os10t0361876-01
Chr10	irgsp1_rep	three_prime_UTR	11177033	11177217	.	+	.	Parent=Os10t0361876-01
Chr10	irgsp1_rep	three_prime_UTR	11179362	11179417	.	+	.	Parent=Os10t0361876-01
Chr10	irgsp1_rep	three_prime_UTR	11180717	11181022	.	+	.	Parent=Os10t0361876-01
Chr10	irgsp1_rep	mRNA	11185582	11186269	.	+	.	ID=Os10t0361900-00;Name=Os10t0361900-00;Locus_id=Os10g0361900;Note=Lipoxygenase%2C LH2 domain containing protein.;Transcript_evidence=EU267981 (DDBJ%2C Best hit);ORF_evidence=NP_001064435.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Lipoxygenase%2C LH2 (IPR001024),Lipase/lipooxygenase%2C PLAT/LH2 (IPR008976),Embryo-specific 3 (IPR010417);TENOR=Os10t0361900-00;KEGG=Os10t0361900-00
Chr10	irgsp1_rep	five_prime_UTR	11185582	11185612	.	+	.	Parent=Os10t0361900-00
Chr10	irgsp1_rep	CDS	11185613	11186116	.	+	0	Parent=Os10t0361900-00
Chr10	irgsp1_rep	three_prime_UTR	11186117	11186269	.	+	.	Parent=Os10t0361900-00
Chr10	irgsp1_rep	mRNA	11191933	11203599	.	-	.	ID=Os10t0362300-01;Name=Os10t0362300-01;Locus_id=Os10g0362300;CGSNL Gene Symbol=HK5;CGSNL Gene Name=HISTIDINE KINASE 5;Oryzabase Gene Symbol Synonym(s)=OHK3%2C HK%2C OsHK5%2C Crl3%2C Ohk3%2C OsHK2;Oryzabase Gene Name Synonym(s)=histidine kinase 5%2C His kinase 5;Note=Similar to Histidine kinase 3.;Transcript_evidence=AK121000 (DDBJ%2C Best hit);ORF_evidence=Q14U60 (UniProt);GO=Biological Process: signal transduction (GO:0007165),Cellular Component: membrane (GO:0016020),Molecular Function: two-component sensor activity (GO:0000155),Molecular Function: signal transducer activity (GO:0004871);InterPro=Signal transduction histidine kinase%2C subgroup 1%2C dimerisation/phosphoacceptor domain (IPR003661),CHASE (IPR006189),Signal transduction histidine kinase%2C homodimeric (IPR009082);NIAS_FLcDNA=J023044K19;Oryzabase=8143;Expression=AK121000;TENOR=Os10t0362300-01;KEGG=Os10t0362300-01
Chr10	irgsp1_rep	five_prime_UTR	11203064	11203599	.	-	.	Parent=Os10t0362300-01
Chr10	irgsp1_rep	CDS	11202809	11203063	.	-	0	Parent=Os10t0362300-01
Chr10	irgsp1_rep	CDS	11200819	11201058	.	-	0	Parent=Os10t0362300-01
Chr10	irgsp1_rep	CDS	11199480	11199887	.	-	0	Parent=Os10t0362300-01
Chr10	irgsp1_rep	CDS	11198747	11199022	.	-	0	Parent=Os10t0362300-01
Chr10	irgsp1_rep	CDS	11197298	11197467	.	-	0	Parent=Os10t0362300-01
Chr10	irgsp1_rep	CDS	11196953	11197165	.	-	1	Parent=Os10t0362300-01
Chr10	irgsp1_rep	CDS	11196683	11196869	.	-	1	Parent=Os10t0362300-01
Chr10	irgsp1_rep	CDS	11196493	11196570	.	-	0	Parent=Os10t0362300-01
Chr10	irgsp1_rep	three_prime_UTR	11196173	11196492	.	-	.	Parent=Os10t0362300-01
Chr10	irgsp1_rep	three_prime_UTR	11195987	11196085	.	-	.	Parent=Os10t0362300-01
Chr10	irgsp1_rep	three_prime_UTR	11194987	11195648	.	-	.	Parent=Os10t0362300-01
Chr10	irgsp1_rep	three_prime_UTR	11193986	11194489	.	-	.	Parent=Os10t0362300-01
Chr10	irgsp1_rep	three_prime_UTR	11193186	11193607	.	-	.	Parent=Os10t0362300-01
Chr10	irgsp1_rep	three_prime_UTR	11191933	11192365	.	-	.	Parent=Os10t0362300-01
Chr10	irgsp1_rep	mRNA	11196139	11201637	.	-	.	ID=Os10t0362300-02;Name=Os10t0362300-02;Locus_id=Os10g0362300;CGSNL Gene Symbol=HK5;CGSNL Gene Name=HISTIDINE KINASE 5;Oryzabase Gene Symbol Synonym(s)=OHK3%2C HK%2C OsHK5%2C Crl3%2C Ohk3%2C OsHK2;Oryzabase Gene Name Synonym(s)=histidine kinase 5%2C His kinase 5;Note=Similar to Histidine kinase.;Transcript_evidence=AK289073 (DDBJ%2C Best hit);ORF_evidence=A1A697 (UniProt);NIAS_FLcDNA=J090094I16;Oryzabase=8143;TENOR=Os10t0362300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	11201059	11201637	.	-	.	Parent=Os10t0362300-02
Chr10	irgsp1_rep	CDS	11200687	11201058	.	-	0	Parent=Os10t0362300-02
Chr10	irgsp1_rep	three_prime_UTR	11196139	11200686	.	-	.	Parent=Os10t0362300-02
Chr10	irgsp1_rep	mRNA	11193340	11203063	.	-	.	ID=Os10t0362300-03;Name=Os10t0362300-03;Locus_id=Os10g0362300;RAP-DB Gene Symbol Synonym(s)=HK5%2C OHK3a%2C OHK3%2C HK%2C OsHK5%2C Crl3%2C Ohk3%2C OsHK2;RAP-DB Gene Name Synonym(s)=HISTIDINE KINASE 5%2C Oryza sativa histidine kinase 3a%2C histidine kinase 5%2C His kinase 5;CGSNL Gene Symbol=HK5;CGSNL Gene Name=HISTIDINE KINASE 5;Oryzabase Gene Symbol Synonym(s)=OHK3%2C HK%2C OsHK5%2C Crl3%2C Ohk3%2C OsHK2;Oryzabase Gene Name Synonym(s)=histidine kinase 5%2C His kinase 5;Note=Histidine kinase%2C Cytokinin signaling;Transcript_evidence=BR000245;ORF_evidence=A1A697;GO=Biological Process: phosphorelay signal transduction system (GO:0000160),Biological Process: signal transduction (GO:0007165),Biological Process: phosphorylation (GO:0016310),Molecular Function: phosphorelay sensor kinase activity (GO:0000155),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772),Cellular Component: membrane (GO:0016020);InterPro=CHASE (IPR006189),Signal transduction histidine kinase%2C homodimeric domain (IPR009082),Signal transduction histidine kinase EnvZ-like%2C dimerisation/phosphoacceptor domain (IPR003661),Signal transduction histidine kinase%2C core (IPR005467),Histidine kinase-like ATPase%2C C-terminal domain (IPR003594),Signal transduction histidine kinase-related protein%2C C-terminal (IPR004358),CheY-like superfamily (IPR011006),Signal transduction response regulator%2C receiver domain (IPR001789);Manual Curation=March 26%2C 2010;Literature_PMID=16919402,17293362,22383541;Oryzabase=8143
Chr10	irgsp1_rep	CDS	11202809	11203063	.	-	0	Parent=Os10t0362300-03
Chr10	irgsp1_rep	CDS	11200819	11201058	.	-	0	Parent=Os10t0362300-03
Chr10	irgsp1_rep	CDS	11199480	11199887	.	-	0	Parent=Os10t0362300-03
Chr10	irgsp1_rep	CDS	11198747	11199022	.	-	0	Parent=Os10t0362300-03
Chr10	irgsp1_rep	CDS	11197298	11197467	.	-	0	Parent=Os10t0362300-03
Chr10	irgsp1_rep	CDS	11196953	11197165	.	-	1	Parent=Os10t0362300-03
Chr10	irgsp1_rep	CDS	11196683	11196869	.	-	1	Parent=Os10t0362300-03
Chr10	irgsp1_rep	CDS	11196519	11196570	.	-	0	Parent=Os10t0362300-03
Chr10	irgsp1_rep	CDS	11196173	11196402	.	-	2	Parent=Os10t0362300-03
Chr10	irgsp1_rep	CDS	11195987	11196085	.	-	0	Parent=Os10t0362300-03
Chr10	irgsp1_rep	CDS	11194987	11195648	.	-	0	Parent=Os10t0362300-03
Chr10	irgsp1_rep	CDS	11193986	11194489	.	-	1	Parent=Os10t0362300-03
Chr10	irgsp1_rep	CDS	11193340	11193607	.	-	1	Parent=Os10t0362300-03
Chr10	irgsp1_rep	mRNA	11191930	11199702	.	-	.	ID=Os10t0362300-04;Name=Os10t0362300-04;Locus_id=Os10g0362300;RAP-DB Gene Symbol Synonym(s)=HK5%2C OHK3b%2C OHK3%2C HK%2C OsHK5%2C Crl3%2C Ohk3%2C OsHK2;RAP-DB Gene Name Synonym(s)=HISTIDINE KINASE 5%2C Oryza sativa histidine kinase 3b%2C histidine kinase 5%2C His kinase 5;CGSNL Gene Symbol=HK5;CGSNL Gene Name=HISTIDINE KINASE 5;Oryzabase Gene Symbol Synonym(s)=OHK3%2C HK%2C OsHK5%2C Crl3%2C Ohk3%2C OsHK2;Oryzabase Gene Name Synonym(s)=histidine kinase 5%2C His kinase 5;Note=Histidine kinase%2C Cytokinin signaling;Transcript_evidence=AB246778;ORF_evidence=Q14U60;GO=Biological Process: phosphorelay signal transduction system (GO:0000160),Biological Process: signal transduction (GO:0007165),Biological Process: phosphorylation (GO:0016310),Molecular Function: phosphorelay sensor kinase activity (GO:0000155),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772),Cellular Component: membrane (GO:0016020);InterPro=CHASE (IPR006189),Signal transduction histidine kinase%2C homodimeric domain (IPR009082),Signal transduction histidine kinase EnvZ-like%2C dimerisation/phosphoacceptor domain (IPR003661),Signal transduction histidine kinase%2C core (IPR005467),Histidine kinase-like ATPase%2C C-terminal domain (IPR003594),Signal transduction histidine kinase-related protein%2C C-terminal (IPR004358),CheY-like superfamily (IPR011006),Signal transduction response regulator%2C receiver domain (IPR001789);Manual Curation=March 26%2C 2010;Literature_PMID=16919402,17293362,22383541;Oryzabase=8143
Chr10	irgsp1_rep	five_prime_UTR	11199648	11199702	.	-	.	Parent=Os10t0362300-04
Chr10	irgsp1_rep	CDS	11199480	11199647	.	-	0	Parent=Os10t0362300-04
Chr10	irgsp1_rep	CDS	11198747	11199022	.	-	0	Parent=Os10t0362300-04
Chr10	irgsp1_rep	CDS	11197298	11197467	.	-	0	Parent=Os10t0362300-04
Chr10	irgsp1_rep	CDS	11196953	11197165	.	-	1	Parent=Os10t0362300-04
Chr10	irgsp1_rep	CDS	11196683	11196869	.	-	1	Parent=Os10t0362300-04
Chr10	irgsp1_rep	CDS	11196519	11196570	.	-	0	Parent=Os10t0362300-04
Chr10	irgsp1_rep	CDS	11196173	11196402	.	-	2	Parent=Os10t0362300-04
Chr10	irgsp1_rep	CDS	11195987	11196085	.	-	0	Parent=Os10t0362300-04
Chr10	irgsp1_rep	CDS	11194987	11195648	.	-	0	Parent=Os10t0362300-04
Chr10	irgsp1_rep	CDS	11193986	11194489	.	-	1	Parent=Os10t0362300-04
Chr10	irgsp1_rep	CDS	11193340	11193607	.	-	1	Parent=Os10t0362300-04
Chr10	irgsp1_rep	three_prime_UTR	11193186	11193339	.	-	.	Parent=Os10t0362300-04
Chr10	irgsp1_rep	three_prime_UTR	11191930	11192365	.	-	.	Parent=Os10t0362300-04
Chr10	irgsp1_rep	mRNA	11244306	11245026	.	+	.	ID=Os10t0362700-01;Name=Os10t0362700-01;Locus_id=Os10g0362700;Note=Conserved hypothetical protein.;Transcript_evidence=AK108642 (DDBJ%2C Best hit);ORF_evidence=A2Z6E1 (UniProt);NIAS_FLcDNA=002-148-A07;Expression=AK108642;TENOR=Os10t0362700-01;KEGG=Os10t0362700-01
Chr10	irgsp1_rep	five_prime_UTR	11244306	11244455	.	+	.	Parent=Os10t0362700-01
Chr10	irgsp1_rep	CDS	11244456	11244854	.	+	0	Parent=Os10t0362700-01
Chr10	irgsp1_rep	three_prime_UTR	11244855	11245026	.	+	.	Parent=Os10t0362700-01
Chr10	irgsp1_rep	mRNA	11250926	11255510	.	+	.	ID=Os10t0363100-01;Name=Os10t0363100-01;Locus_id=Os10g0363100;Oryzabase Gene Symbol Synonym(s)=OsGAUT4%2C GAUT4;Oryzabase Gene Name Synonym(s)=galacturonosyltransferase 4;Note=Conserved hypothetical protein.;Transcript_evidence=AK066204 (DDBJ%2C Best hit);ORF_evidence=Q339E2 (UniProt);NIAS_FLcDNA=J013056D06;Oryzabase=23266;TENOR=Os10t0363100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	11250926	11251036	.	+	.	Parent=Os10t0363100-01
Chr10	irgsp1_rep	five_prime_UTR	11251532	11251602	.	+	.	Parent=Os10t0363100-01
Chr10	irgsp1_rep	five_prime_UTR	11252108	11252392	.	+	.	Parent=Os10t0363100-01
Chr10	irgsp1_rep	five_prime_UTR	11252529	11252680	.	+	.	Parent=Os10t0363100-01
Chr10	irgsp1_rep	CDS	11252681	11252728	.	+	0	Parent=Os10t0363100-01
Chr10	irgsp1_rep	CDS	11252831	11252977	.	+	0	Parent=Os10t0363100-01
Chr10	irgsp1_rep	CDS	11253073	11253222	.	+	0	Parent=Os10t0363100-01
Chr10	irgsp1_rep	three_prime_UTR	11253223	11253741	.	+	.	Parent=Os10t0363100-01
Chr10	irgsp1_rep	three_prime_UTR	11253864	11254836	.	+	.	Parent=Os10t0363100-01
Chr10	irgsp1_rep	three_prime_UTR	11254994	11255510	.	+	.	Parent=Os10t0363100-01
Chr10	irgsp1_rep	mRNA	11253862	11255580	.	+	.	ID=Os10t0363100-02;Name=Os10t0363100-02;Locus_id=Os10g0363100;Oryzabase Gene Symbol Synonym(s)=OsGAUT4%2C GAUT4;Oryzabase Gene Name Synonym(s)=galacturonosyltransferase 4;Note=Similar to glycosyltransferase%2C family GT8.;Transcript_evidence=AK061910 (DDBJ%2C Best hit);ORF_evidence=XP_002328269.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 8 (IPR002495);NIAS_FLcDNA=001-042-A03;Oryzabase=23266;Expression=AK061910;TENOR=Os10t0363100-02;KEGG=Os10t0363100-02
Chr10	irgsp1_rep	CDS	11253862	11254836	.	+	0	Parent=Os10t0363100-02
Chr10	irgsp1_rep	CDS	11254994	11255272	.	+	0	Parent=Os10t0363100-02
Chr10	irgsp1_rep	three_prime_UTR	11255273	11255580	.	+	.	Parent=Os10t0363100-02
Chr10	irgsp1_rep	mRNA	11273893	11284909	.	+	.	ID=Os10t0363300-01;Name=Os10t0363300-01;Locus_id=Os10g0363300;RAP-DB Gene Symbol Synonym(s)=ACC1;RAP-DB Gene Name Synonym(s)=Acetyl-CoA carboxylase 1;Note=Acetyl-CoA carboxylase (EC 6.4.1.2);Transcript_evidence=AK058817 (truncated);ORF_evidence=Q8S6N5;GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Molecular Function: catalytic activity (GO:0003824),Molecular Function: acetyl-CoA carboxylase activity (GO:0003989),Molecular Function: biotin carboxylase activity (GO:0004075),Molecular Function: ATP binding (GO:0005524),Molecular Function: ligase activity (GO:0016874),Molecular Function: metal ion binding (GO:0046872);InterPro=Pre-ATP-grasp domain (IPR016185),Biotin carboxylation domain (IPR011764),Biotin carboxylase-like%2C N-terminal domain (IPR005481),ATP-grasp fold (IPR011761),Carbamoyl-phosphate synthetase large subunit-like%2C ATP-binding domain (IPR005479),ATP-grasp fold%2C subdomain 1 (IPR013815),ATP-grasp fold%2C subdomain 2 (IPR013816),Rudiment single hybrid motif (IPR011054),Biotin carboxylase%2C C-terminal (IPR005482),Biotin/lipoyl attachment (IPR000089),Single hybrid motif (IPR011053),Acetyl-CoA carboxylase%2C central domain (IPR013537),ClpP/crotonase-like domain (IPR029045),Carboxyl transferase (IPR000022),Acetyl-coenzyme A carboxyltransferase%2C C-terminal (IPR011763);NIAS_FLcDNA=001-003-F07 (truncated);Manual Curation=March 8%2C 2017;Expression=AK058817;TENOR=Os10t0363300-01;KEGG=Os10t0363300-01 (EC:6.3.4.14 EC:6.4.1.2);B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	11273893	11274240	.	+	0	Parent=Os10t0363300-01
Chr10	irgsp1_rep	CDS	11274343	11274549	.	+	0	Parent=Os10t0363300-01
Chr10	irgsp1_rep	CDS	11274641	11274799	.	+	0	Parent=Os10t0363300-01
Chr10	irgsp1_rep	CDS	11274909	11275001	.	+	0	Parent=Os10t0363300-01
Chr10	irgsp1_rep	CDS	11275205	11275300	.	+	0	Parent=Os10t0363300-01
Chr10	irgsp1_rep	CDS	11275749	11276016	.	+	0	Parent=Os10t0363300-01
Chr10	irgsp1_rep	CDS	11276097	11276335	.	+	2	Parent=Os10t0363300-01
Chr10	irgsp1_rep	CDS	11276472	11276511	.	+	0	Parent=Os10t0363300-01
Chr10	irgsp1_rep	CDS	11276590	11276714	.	+	2	Parent=Os10t0363300-01
Chr10	irgsp1_rep	CDS	11276791	11276907	.	+	0	Parent=Os10t0363300-01
Chr10	irgsp1_rep	CDS	11276997	11277071	.	+	0	Parent=Os10t0363300-01
Chr10	irgsp1_rep	CDS	11277178	11277234	.	+	0	Parent=Os10t0363300-01
Chr10	irgsp1_rep	CDS	11277327	11277431	.	+	0	Parent=Os10t0363300-01
Chr10	irgsp1_rep	CDS	11277536	11277622	.	+	0	Parent=Os10t0363300-01
Chr10	irgsp1_rep	CDS	11278082	11278273	.	+	0	Parent=Os10t0363300-01
Chr10	irgsp1_rep	CDS	11278367	11278555	.	+	0	Parent=Os10t0363300-01
Chr10	irgsp1_rep	CDS	11278710	11278820	.	+	0	Parent=Os10t0363300-01
Chr10	irgsp1_rep	CDS	11278932	11279021	.	+	0	Parent=Os10t0363300-01
Chr10	irgsp1_rep	CDS	11279106	11279282	.	+	0	Parent=Os10t0363300-01
Chr10	irgsp1_rep	CDS	11279367	11279444	.	+	0	Parent=Os10t0363300-01
Chr10	irgsp1_rep	CDS	11279538	11279660	.	+	0	Parent=Os10t0363300-01
Chr10	irgsp1_rep	CDS	11279749	11280018	.	+	0	Parent=Os10t0363300-01
Chr10	irgsp1_rep	CDS	11280111	11280454	.	+	0	Parent=Os10t0363300-01
Chr10	irgsp1_rep	CDS	11280596	11280833	.	+	1	Parent=Os10t0363300-01
Chr10	irgsp1_rep	CDS	11280923	11281290	.	+	0	Parent=Os10t0363300-01
Chr10	irgsp1_rep	CDS	11281398	11281608	.	+	1	Parent=Os10t0363300-01
Chr10	irgsp1_rep	CDS	11281914	11282093	.	+	0	Parent=Os10t0363300-01
Chr10	irgsp1_rep	CDS	11282178	11284337	.	+	0	Parent=Os10t0363300-01
Chr10	irgsp1_rep	CDS	11284443	11284499	.	+	0	Parent=Os10t0363300-01
Chr10	irgsp1_rep	three_prime_UTR	11284500	11284909	.	+	.	Parent=Os10t0363300-01
Chr10	irgsp1_rep	mRNA	11289218	11290800	.	+	.	ID=Os10t0363500-00;Name=Os10t0363500-00;Locus_id=Os10g0363500;Note=Pentatricopeptide repeat containing protein.;Transcript_evidence=AK360817 (DDBJ);ORF_evidence=NP_001064440.2 (RefSeq);InterPro=Pentatricopeptide repeat (IPR002885);TENOR=Os10t0363500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	11289218	11290756	.	+	0	Parent=Os10t0363500-00
Chr10	irgsp1_rep	three_prime_UTR	11290757	11290800	.	+	.	Parent=Os10t0363500-00
Chr10	irgsp1_rep	mRNA	11300743	11303566	.	+	.	ID=Os10t0363600-01;Name=Os10t0363600-01;Locus_id=Os10g0363600;Oryzabase Gene Symbol Synonym(s)=OsFbox547%2C Os_F0119;Oryzabase Gene Name Synonym(s)=F-box protein 547;Note=Kelch-type beta propeller domain containing protein.;Transcript_evidence=AK111523 (DDBJ%2C Best hit);ORF_evidence=B6SZ54 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Kelch repeat type 1 (IPR006652),Galactose oxidase%2C beta-propeller (IPR015916),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013002P06;Oryzabase=17316;Expression=AK111523;TENOR=Os10t0363600-01;KEGG=Os10t0363600-01
Chr10	irgsp1_rep	five_prime_UTR	11300743	11300859	.	+	.	Parent=Os10t0363600-01
Chr10	irgsp1_rep	five_prime_UTR	11301883	11301904	.	+	.	Parent=Os10t0363600-01
Chr10	irgsp1_rep	CDS	11301905	11303332	.	+	0	Parent=Os10t0363600-01
Chr10	irgsp1_rep	three_prime_UTR	11303333	11303566	.	+	.	Parent=Os10t0363600-01
Chr10	irgsp1_rep	mRNA	11304991	11305327	.	-	.	ID=Os10t0363650-01;Name=Os10t0363650-01;Locus_id=Os10g0363650;Note=Non-protein coding transcript.;Transcript_evidence=AK242496 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080307P13;TENOR=Os10t0363650-01
Chr10	irgsp1_rep	exon	11304991	11305327	.	-	.	Parent=Os10t0363650-01
Chr10	irgsp1_rep	mRNA	11314672	11317853	.	-	.	ID=Os10t0363700-01;Name=Os10t0363700-01;Locus_id=Os10g0363700;Note=Conserved hypothetical protein.;Transcript_evidence=AK242933 (DDBJ%2C Best hit);ORF_evidence=Q8S6N2 (UniProt);NIAS_FLcDNA=J090086L03;TENOR=Os10t0363700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	11316852	11317853	.	-	.	Parent=Os10t0363700-01
Chr10	irgsp1_rep	CDS	11316639	11316851	.	-	0	Parent=Os10t0363700-01
Chr10	irgsp1_rep	three_prime_UTR	11315450	11316638	.	-	.	Parent=Os10t0363700-01
Chr10	irgsp1_rep	three_prime_UTR	11315135	11315335	.	-	.	Parent=Os10t0363700-01
Chr10	irgsp1_rep	three_prime_UTR	11314672	11315016	.	-	.	Parent=Os10t0363700-01
Chr10	irgsp1_rep	mRNA	11383073	11388110	.	-	.	ID=Os10t0364600-00;Name=Os10t0364600-00;Locus_id=Os10g0364600;Note=Non-protein coding transcript.;Transcript_evidence=BT019071 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0364600-00
Chr10	irgsp1_rep	exon	11387834	11388110	.	-	.	Parent=Os10t0364600-00
Chr10	irgsp1_rep	exon	11384879	11384969	.	-	.	Parent=Os10t0364600-00
Chr10	irgsp1_rep	exon	11384722	11384786	.	-	.	Parent=Os10t0364600-00
Chr10	irgsp1_rep	exon	11383073	11383285	.	-	.	Parent=Os10t0364600-00
Chr10	irgsp1_rep	mRNA	11383086	11386158	.	+	.	ID=Os10t0364700-01;Name=Os10t0364700-01;Locus_id=Os10g0364700;Note=Similar to protein translocase/ protein transporter.;Transcript_evidence=AK109451 (DDBJ%2C Best hit);ORF_evidence=NP_001158987.1 (RefSeq);NIAS_FLcDNA=001-117-E01;TENOR=Os10t0364700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	11383086	11383820	.	+	.	Parent=Os10t0364700-01
Chr10	irgsp1_rep	five_prime_UTR	11384438	11384997	.	+	.	Parent=Os10t0364700-01
Chr10	irgsp1_rep	CDS	11384998	11385129	.	+	0	Parent=Os10t0364700-01
Chr10	irgsp1_rep	three_prime_UTR	11385130	11386158	.	+	.	Parent=Os10t0364700-01
Chr10	irgsp1_rep	mRNA	11388674	11390191	.	-	.	ID=Os10t0364800-01;Name=Os10t0364800-01;Locus_id=Os10g0364800;Note=Non-protein coding transcript.;Transcript_evidence=AK106942 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-119-D06;TENOR=Os10t0364800-01
Chr10	irgsp1_rep	exon	11388674	11390191	.	-	.	Parent=Os10t0364800-01
Chr10	irgsp1_rep	mRNA	11390596	11391123	.	+	.	ID=Os10t0364900-01;Name=Os10t0364900-01;Locus_id=Os10g0364900;Note=Conserved hypothetical protein.;Transcript_evidence=AK120490 (DDBJ%2C Best hit);ORF_evidence=Q339E1 (UniProt);NIAS_FLcDNA=J013118H09;Expression=AK120490;TENOR=Os10t0364900-01;KEGG=Os10t0364900-01
Chr10	irgsp1_rep	five_prime_UTR	11390596	11390651	.	+	.	Parent=Os10t0364900-01
Chr10	irgsp1_rep	CDS	11390652	11390894	.	+	0	Parent=Os10t0364900-01
Chr10	irgsp1_rep	three_prime_UTR	11390895	11391123	.	+	.	Parent=Os10t0364900-01
Chr10	irgsp1_rep	mRNA	11395165	11396073	.	-	.	ID=Os10t0365001-01;Name=Os10t0365001-01;Locus_id=Os10g0365001;Note=Conserved hypothetical protein.;Transcript_evidence=AK242395 (DDBJ%2C Best hit);ORF_evidence=NP_001176114.1 (RefSeq);NIAS_FLcDNA=J080064M09;TENOR=Os10t0365001-01;KEGG=Os10t0365001-01
Chr10	irgsp1_rep	five_prime_UTR	11395402	11396073	.	-	.	Parent=Os10t0365001-01
Chr10	irgsp1_rep	CDS	11395225	11395401	.	-	0	Parent=Os10t0365001-01
Chr10	irgsp1_rep	three_prime_UTR	11395165	11395224	.	-	.	Parent=Os10t0365001-01
Chr10	irgsp1_rep	mRNA	11398064	11399063	.	-	.	ID=Os10t0365050-01;Name=Os10t0365050-01;Locus_id=Os10g0365050;Note=Hypothetical gene.;Transcript_evidence=AK106938 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-119-C12;Expression=AK106938;TENOR=Os10t0365050-01;KEGG=Os10t0365050-01
Chr10	irgsp1_rep	five_prime_UTR	11399062	11399063	.	-	.	Parent=Os10t0365050-01
Chr10	irgsp1_rep	CDS	11398357	11399061	.	-	0	Parent=Os10t0365050-01
Chr10	irgsp1_rep	three_prime_UTR	11398064	11398356	.	-	.	Parent=Os10t0365050-01
Chr10	irgsp1_rep	mRNA	11398279	11399073	.	+	.	ID=Os10t0365200-00;Name=Os10t0365200-00;Locus_id=Os10g0365200;CGSNL Gene Symbol=GSTU33;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 33;Oryzabase Gene Symbol Synonym(s)=OsGSTU33;Note=Thioredoxin fold domain containing protein.;Transcript_evidence=AK363406 (DDBJ);ORF_evidence=NP_001176115.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);Oryzabase=9550;TENOR=Os10t0365200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	11398279	11398326	.	+	.	Parent=Os10t0365200-00
Chr10	irgsp1_rep	CDS	11398327	11399073	.	+	0	Parent=Os10t0365200-00
Chr10	irgsp1_rep	mRNA	11405747	11406794	.	-	.	ID=Os10t0365466-00;Name=Os10t0365466-00;Locus_id=Os10g0365466;Note=Hypothetical protein.;Transcript_evidence=tplb0034e17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0365466-00
Chr10	irgsp1_rep	five_prime_UTR	11406493	11406794	.	-	.	Parent=Os10t0365466-00
Chr10	irgsp1_rep	five_prime_UTR	11406117	11406429	.	-	.	Parent=Os10t0365466-00
Chr10	irgsp1_rep	CDS	11405747	11406116	.	-	0	Parent=Os10t0365466-00
Chr10	irgsp1_rep	mRNA	11414311	11417030	.	+	.	ID=Os10t0365800-01;Name=Os10t0365800-01;Locus_id=Os10g0365800;Note=Protein of unknown function DUF3615 domain containing protein.;Transcript_evidence=AK100083 (DDBJ%2C Best hit);ORF_evidence=Q8W2T5 (UniProt);InterPro=Protein of unknown function DUF3615 (IPR022059);NIAS_FLcDNA=J023002G01;Expression=AK100083;TENOR=Os10t0365800-01;KEGG=Os10t0365800-01
Chr10	irgsp1_rep	five_prime_UTR	11414311	11414371	.	+	.	Parent=Os10t0365800-01
Chr10	irgsp1_rep	CDS	11414372	11415949	.	+	0	Parent=Os10t0365800-01
Chr10	irgsp1_rep	CDS	11416054	11416321	.	+	0	Parent=Os10t0365800-01
Chr10	irgsp1_rep	CDS	11416557	11416810	.	+	2	Parent=Os10t0365800-01
Chr10	irgsp1_rep	three_prime_UTR	11416811	11417030	.	+	.	Parent=Os10t0365800-01
Chr10	irgsp1_rep	mRNA	11419154	11420101	.	-	.	ID=Os10t0365900-00;Name=Os10t0365900-00;Locus_id=Os10g0365900;Note=Similar to tRNA wybutosine-synthesizing protein 1 homolog.;Transcript_evidence=EU949580 (DDBJ);ORF_evidence=Q8H8N3 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=Radical SAM (IPR007197);TENOR=Os10t0365900-00;KEGG=Os10t0365900-00
Chr10	irgsp1_rep	CDS	11419829	11420101	.	-	0	Parent=Os10t0365900-00
Chr10	irgsp1_rep	CDS	11419660	11419746	.	-	0	Parent=Os10t0365900-00
Chr10	irgsp1_rep	CDS	11419518	11419553	.	-	0	Parent=Os10t0365900-00
Chr10	irgsp1_rep	three_prime_UTR	11419398	11419517	.	-	.	Parent=Os10t0365900-00
Chr10	irgsp1_rep	three_prime_UTR	11419154	11419304	.	-	.	Parent=Os10t0365900-00
Chr10	irgsp1_rep	mRNA	11460330	11464119	.	+	.	ID=Os10t0366400-01;Name=Os10t0366400-01;Locus_id=Os10g0366400;Note=Conserved hypothetical protein.;Transcript_evidence=AK073721 (DDBJ%2C Best hit);ORF_evidence=B8BGG8 (UniProt);NIAS_FLcDNA=J033061I10;Oryzabase=22525;Expression=AK073721;TENOR=Os10t0366400-01;KEGG=Os10t0366400-01
Chr10	irgsp1_rep	five_prime_UTR	11460330	11460385	.	+	.	Parent=Os10t0366400-01
Chr10	irgsp1_rep	five_prime_UTR	11460508	11460523	.	+	.	Parent=Os10t0366400-01
Chr10	irgsp1_rep	CDS	11460524	11460794	.	+	0	Parent=Os10t0366400-01
Chr10	irgsp1_rep	CDS	11461311	11461534	.	+	2	Parent=Os10t0366400-01
Chr10	irgsp1_rep	CDS	11461622	11462018	.	+	0	Parent=Os10t0366400-01
Chr10	irgsp1_rep	CDS	11462097	11462186	.	+	2	Parent=Os10t0366400-01
Chr10	irgsp1_rep	CDS	11462411	11462529	.	+	2	Parent=Os10t0366400-01
Chr10	irgsp1_rep	CDS	11463168	11463239	.	+	0	Parent=Os10t0366400-01
Chr10	irgsp1_rep	CDS	11463844	11463858	.	+	0	Parent=Os10t0366400-01
Chr10	irgsp1_rep	three_prime_UTR	11463859	11464119	.	+	.	Parent=Os10t0366400-01
Chr10	irgsp1_rep	mRNA	11460709	11464087	.	+	.	ID=Os10t0366400-02;Name=Os10t0366400-02;Locus_id=Os10g0366400;Note=Hypothetical conserved gene.;Transcript_evidence=AK104064 (DDBJ%2C Best hit);ORF_evidence=B8BGG8 (UniProt);NIAS_FLcDNA=001-025-C12;Oryzabase=22525;Expression=AK104064;TENOR=Os10t0366400-02;KEGG=Os10t0366400-02
Chr10	irgsp1_rep	five_prime_UTR	11460709	11460709	.	+	.	Parent=Os10t0366400-02
Chr10	irgsp1_rep	CDS	11460710	11460794	.	+	0	Parent=Os10t0366400-02
Chr10	irgsp1_rep	CDS	11461311	11461534	.	+	2	Parent=Os10t0366400-02
Chr10	irgsp1_rep	CDS	11461622	11462018	.	+	0	Parent=Os10t0366400-02
Chr10	irgsp1_rep	CDS	11462097	11462186	.	+	2	Parent=Os10t0366400-02
Chr10	irgsp1_rep	CDS	11462411	11462529	.	+	2	Parent=Os10t0366400-02
Chr10	irgsp1_rep	CDS	11463168	11463239	.	+	0	Parent=Os10t0366400-02
Chr10	irgsp1_rep	CDS	11463844	11463858	.	+	0	Parent=Os10t0366400-02
Chr10	irgsp1_rep	three_prime_UTR	11463859	11464087	.	+	.	Parent=Os10t0366400-02
Chr10	irgsp1_rep	mRNA	11537637	11538948	.	+	.	ID=Os10t0368100-01;Name=Os10t0368100-01;Locus_id=Os10g0368100;Note=Similar to Glutathione S-transferase GSTU35 (Fragment).;Transcript_evidence=AK105198 (DDBJ%2C Best hit);ORF_evidence=Q6QN17 (UniProt);InterPro=Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=001-107-G06;Expression=AK105198;TENOR=Os10t0368100-01;KEGG=Os10t0368100-01
Chr10	irgsp1_rep	five_prime_UTR	11537637	11537887	.	+	.	Parent=Os10t0368100-01
Chr10	irgsp1_rep	CDS	11537888	11537891	.	+	0	Parent=Os10t0368100-01
Chr10	irgsp1_rep	CDS	11538334	11538734	.	+	2	Parent=Os10t0368100-01
Chr10	irgsp1_rep	three_prime_UTR	11538735	11538948	.	+	.	Parent=Os10t0368100-01
Chr10	irgsp1_rep	mRNA	11539999	11540994	.	+	.	ID=Os10t0368200-01;Name=Os10t0368200-01;Locus_id=Os10g0368200;Note=Hypothetical protein.;Transcript_evidence=AK061084 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=006-206-F11;Expression=AK061084;TENOR=Os10t0368200-01;KEGG=Os10t0368200-01
Chr10	irgsp1_rep	five_prime_UTR	11539999	11540318	.	+	.	Parent=Os10t0368200-01
Chr10	irgsp1_rep	CDS	11540319	11540585	.	+	0	Parent=Os10t0368200-01
Chr10	irgsp1_rep	three_prime_UTR	11540586	11540994	.	+	.	Parent=Os10t0368200-01
Chr10	irgsp1_rep	mRNA	11543109	11546028	.	-	.	ID=Os10t0368400-01;Name=Os10t0368400-01;Locus_id=Os10g0368400;Note=Similar to Adapter-related protein complex 4 sigma 1 subunit (Sigma subunit of AP-4) (AP-4 adapter complex sigma subunit).;Transcript_evidence=AK120131 (DDBJ%2C Best hit);ORF_evidence=B4FTQ9 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: protein transport (GO:0015031),Molecular Function: protein transporter activity (GO:0008565);InterPro=Longin-like (IPR011012),Adaptor protein complex%2C sigma subunit (IPR016635),AP complex%2C mu/sigma subunit (IPR022775);NIAS_FLcDNA=J013026P11;Expression=AK120131;TENOR=Os10t0368400-01;KEGG=Os10t0368400-01
Chr10	irgsp1_rep	five_prime_UTR	11545980	11546028	.	-	.	Parent=Os10t0368400-01
Chr10	irgsp1_rep	CDS	11545839	11545979	.	-	0	Parent=Os10t0368400-01
Chr10	irgsp1_rep	CDS	11545618	11545704	.	-	0	Parent=Os10t0368400-01
Chr10	irgsp1_rep	CDS	11543618	11543686	.	-	0	Parent=Os10t0368400-01
Chr10	irgsp1_rep	CDS	11543385	11543519	.	-	0	Parent=Os10t0368400-01
Chr10	irgsp1_rep	three_prime_UTR	11543109	11543384	.	-	.	Parent=Os10t0368400-01
Chr10	irgsp1_rep	mRNA	11573766	11576077	.	-	.	ID=Os10t0368902-00;Name=Os10t0368902-00;Locus_id=Os10g0368902;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G5E1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os10t0368902-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	11574516	11576077	.	-	0	Parent=Os10t0368902-00
Chr10	irgsp1_rep	CDS	11573766	11573853	.	-	1	Parent=Os10t0368902-00
Chr10	irgsp1_rep	mRNA	11581310	11585280	.	-	.	ID=Os10t0369000-01;Name=Os10t0369000-01;Locus_id=Os10g0369000;RAP-DB Gene Symbol Synonym(s)=OsERS1;RAP-DB Gene Name Synonym(s)=glutamyl-tRNA synthetase;CGSNL Gene Symbol=ERS1;CGSNL Gene Name=GLUTAMYL-TRNA SYNTHETASE 1;Oryzabase Gene Symbol Synonym(s)=OsERS1;Oryzabase Gene Name Synonym(s)=glutamyl-tRNA synthetase 1;Note=Glutamyl-tRNA synthetase%2C Modulation of early anther cell division and patterning;Transcript_evidence=AK072810;ORF_evidence=Q8S5M6;GO=Biological Process: translation (GO:0006412),Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: glutamyl-tRNA aminoacylation (GO:0006424),Biological Process: tRNA aminoacylation (GO:0043039),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: glutamate-tRNA ligase activity (GO:0004818),Molecular Function: ATP binding (GO:0005524),Cellular Component: cytoplasm (GO:0005737);InterPro=Glutathione S-transferase%2C C-terminal domain superfamily (IPR036282),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Ribosomal protein L25/Gln-tRNA synthetase%2C anti-codon-binding domain superfamily (IPR011035),Ribosomal protein L25/Gln-tRNA synthetase%2C N-terminal (IPR020056),Glutamyl/glutaminyl-tRNA synthetase (IPR000924),Glutamyl-tRNA synthetase%2C archaeal/eukaryotic cytosolic (IPR004526),Glutamyl/glutaminyl-tRNA synthetase%2C class Ib%2C catalytic domain (IPR020058),Glutamyl/glutaminyl-tRNA synthetase%2C class Ib%2C anti-codon binding domain (IPR020059),Aminoacyl-tRNA synthetase%2C class I%2C conserved site (IPR001412);NIAS_FLcDNA=J023141A17;Manual Curation=June 14%2C 2018;Literature_PMID=29720556;Oryzabase=22416;Expression=AK072810;TENOR=Os10t0369000-01;KEGG=Os10t0369000-01 (EC:6.1.1.17);Subcellular location=cytoplasm (GO:0005737) [mainly], mitochondrion (GO:0005739)
Chr10	irgsp1_rep	five_prime_UTR	11585126	11585280	.	-	.	Parent=Os10t0369000-01
Chr10	irgsp1_rep	five_prime_UTR	11584850	11584857	.	-	.	Parent=Os10t0369000-01
Chr10	irgsp1_rep	CDS	11584713	11584849	.	-	0	Parent=Os10t0369000-01
Chr10	irgsp1_rep	CDS	11584208	11584298	.	-	1	Parent=Os10t0369000-01
Chr10	irgsp1_rep	CDS	11583966	11584119	.	-	0	Parent=Os10t0369000-01
Chr10	irgsp1_rep	CDS	11582799	11583874	.	-	2	Parent=Os10t0369000-01
Chr10	irgsp1_rep	CDS	11582245	11582709	.	-	0	Parent=Os10t0369000-01
Chr10	irgsp1_rep	CDS	11581730	11581948	.	-	0	Parent=Os10t0369000-01
Chr10	irgsp1_rep	three_prime_UTR	11581310	11581729	.	-	.	Parent=Os10t0369000-01
Chr10	irgsp1_rep	mRNA	11581449	11582711	.	-	.	ID=Os10t0369000-02;Name=Os10t0369000-02;Locus_id=Os10g0369000;CGSNL Gene Symbol=ERS1;CGSNL Gene Name=GLUTAMYL-TRNA SYNTHETASE 1;Oryzabase Gene Symbol Synonym(s)=OsERS1;Oryzabase Gene Name Synonym(s)=glutamyl-tRNA synthetase 1;Note=Similar to glutamyl-tRNA synthetase%2C cytoplasmic.;Transcript_evidence=AK059688 (DDBJ%2C Best hit);ORF_evidence=NP_001147450.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: tRNA aminoacylation (GO:0043039),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: ATP binding (GO:0005524),Molecular Function: ligase activity%2C forming aminoacyl-tRNA and related compounds (GO:0016876);InterPro=Glutamyl/glutaminyl-tRNA synthetase%2C class Ib (IPR000924),Ribosomal protein L25/Gln-tRNA synthetase%2C anti-codon-binding domain (IPR011035),Ribosomal protein L25/Gln-tRNA synthetase%2C beta-barrel domain (IPR020056),Glutamyl/glutaminyl-tRNA synthetase%2C class Ib%2C anti-codon binding domain (IPR020059);NIAS_FLcDNA=001-032-A11;Oryzabase=22416;Expression=AK059688;TENOR=Os10t0369000-02;KEGG=Os10t0369000-02 (EC:6.1.1.15%2C EC:6.1.1.17)
Chr10	irgsp1_rep	five_prime_UTR	11582710	11582711	.	-	.	Parent=Os10t0369000-02
Chr10	irgsp1_rep	CDS	11582245	11582709	.	-	0	Parent=Os10t0369000-02
Chr10	irgsp1_rep	CDS	11581730	11581948	.	-	0	Parent=Os10t0369000-02
Chr10	irgsp1_rep	three_prime_UTR	11581449	11581729	.	-	.	Parent=Os10t0369000-02
Chr10	irgsp1_rep	mRNA	11596537	11599845	.	-	.	ID=Os10t0369500-01;Name=Os10t0369500-01;Locus_id=Os10g0369500;Note=Yippee-like protein domain containing protein.;Transcript_evidence=AK071370 (DDBJ%2C Best hit);ORF_evidence=NP_001149192.1 (RefSeq);InterPro=Yippee-like protein (IPR004910);NIAS_FLcDNA=J023094J07;Expression=AK071370;TENOR=Os10t0369500-01;KEGG=Os10t0369500-01
Chr10	irgsp1_rep	five_prime_UTR	11599729	11599845	.	-	.	Parent=Os10t0369500-01
Chr10	irgsp1_rep	CDS	11599489	11599728	.	-	0	Parent=Os10t0369500-01
Chr10	irgsp1_rep	three_prime_UTR	11596537	11599488	.	-	.	Parent=Os10t0369500-01
Chr10	irgsp1_rep	mRNA	11605194	11607118	.	-	.	ID=Os10t0369600-01;Name=Os10t0369600-01;Locus_id=Os10g0369600;CGSNL Gene Symbol=GRAS39;CGSNL Gene Name=GRAS PROTEIN 39;Oryzabase Gene Symbol Synonym(s)=OsGRAS-39%2C OsGRAS39%2C GRAS-39;Oryzabase Gene Name Synonym(s)=GRAS protein 39;Note=Similar to GRAS transcription factor (Fragment).;Transcript_evidence=AK058352 (DDBJ%2C Best hit);ORF_evidence=F1DK08 (UniProt);NIAS_FLcDNA=001-014-E08;Oryzabase=22810;TENOR=Os10t0369600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	11607118	11607118	.	-	.	Parent=Os10t0369600-01
Chr10	irgsp1_rep	CDS	11606796	11607117	.	-	0	Parent=Os10t0369600-01
Chr10	irgsp1_rep	CDS	11606295	11606326	.	-	2	Parent=Os10t0369600-01
Chr10	irgsp1_rep	three_prime_UTR	11605737	11606294	.	-	.	Parent=Os10t0369600-01
Chr10	irgsp1_rep	three_prime_UTR	11605194	11605616	.	-	.	Parent=Os10t0369600-01
Chr10	irgsp1_rep	mRNA	11605735	11607432	.	+	.	ID=Os10t0369750-00;Name=Os10t0369750-00;Locus_id=Os10g0369750;Note=Hypothetical protein.;Transcript_evidence=tplb0046h15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0369750-00
Chr10	irgsp1_rep	five_prime_UTR	11605735	11606214	.	+	.	Parent=Os10t0369750-00
Chr10	irgsp1_rep	CDS	11606215	11606463	.	+	0	Parent=Os10t0369750-00
Chr10	irgsp1_rep	three_prime_UTR	11606464	11607432	.	+	.	Parent=Os10t0369750-00
Chr10	irgsp1_rep	mRNA	11624392	11629513	.	+	.	ID=Os10t0369900-01;Name=Os10t0369900-01;Locus_id=Os10g0369900;CGSNL Gene Symbol=INO2;CGSNL Gene Name=INOSITOL 1-PHOSPHATE SYNTHASE-2;Oryzabase Gene Symbol Synonym(s)=OsINO2%2C RINO2%2C OsINO1-2;Oryzabase Gene Name Synonym(s)=inositol 1-phosphate synthase-2%2C Inositol-3-phosphate synthase 2%2C Myo-inositol-1-phosphate synthase 2%2C MI-1-P synthase 2%2C 1D-myo-inositol 3-phosphate synthase 2;Note=Similar to Myo-inositol-1-phosphate synthase.;Transcript_evidence=AK069323 (DDBJ%2C Best hit),AK100872 (DDBJ%2C Best hit);ORF_evidence=NP_001105552.1 (RefSeq);GO=Biological Process: inositol biosynthetic process (GO:0006021),Biological Process: phospholipid biosynthetic process (GO:0008654),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: inositol-3-phosphate synthase activity (GO:0004512);InterPro=Myo-inositol-1-phosphate synthase (IPR002587),Myo-inositol-1-phosphate synthase%2C GAPDH-like (IPR013021),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023016I07,J023125K01;Oryzabase=11886;TENOR=Os10t0369900-01
Chr10	irgsp1_rep	five_prime_UTR	11624392	11624465	.	+	.	Parent=Os10t0369900-01
Chr10	irgsp1_rep	CDS	11624466	11624650	.	+	0	Parent=Os10t0369900-01
Chr10	irgsp1_rep	CDS	11624848	11624916	.	+	1	Parent=Os10t0369900-01
Chr10	irgsp1_rep	CDS	11625629	11625764	.	+	1	Parent=Os10t0369900-01
Chr10	irgsp1_rep	CDS	11626329	11626576	.	+	0	Parent=Os10t0369900-01
Chr10	irgsp1_rep	CDS	11627026	11627252	.	+	1	Parent=Os10t0369900-01
Chr10	irgsp1_rep	CDS	11627362	11627477	.	+	2	Parent=Os10t0369900-01
Chr10	irgsp1_rep	CDS	11627572	11627748	.	+	0	Parent=Os10t0369900-01
Chr10	irgsp1_rep	CDS	11628156	11628344	.	+	0	Parent=Os10t0369900-01
Chr10	irgsp1_rep	CDS	11628451	11628513	.	+	0	Parent=Os10t0369900-01
Chr10	irgsp1_rep	CDS	11628936	11629055	.	+	0	Parent=Os10t0369900-01
Chr10	irgsp1_rep	three_prime_UTR	11629056	11629513	.	+	.	Parent=Os10t0369900-01
Chr10	irgsp1_rep	mRNA	11627361	11629055	.	-	.	ID=Os10t0369950-00;Name=Os10t0369950-00;Locus_id=Os10g0369950;Note=Hypothetical gene.;Transcript_evidence=BT019116 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0369950-00;KEGG=Os10t0369950-00
Chr10	irgsp1_rep	five_prime_UTR	11628931	11629055	.	-	.	Parent=Os10t0369950-00
Chr10	irgsp1_rep	five_prime_UTR	11628472	11628508	.	-	.	Parent=Os10t0369950-00
Chr10	irgsp1_rep	CDS	11628428	11628471	.	-	0	Parent=Os10t0369950-00
Chr10	irgsp1_rep	CDS	11628154	11628326	.	-	1	Parent=Os10t0369950-00
Chr10	irgsp1_rep	CDS	11627706	11627746	.	-	2	Parent=Os10t0369950-00
Chr10	irgsp1_rep	three_prime_UTR	11627531	11627705	.	-	.	Parent=Os10t0369950-00
Chr10	irgsp1_rep	three_prime_UTR	11627361	11627444	.	-	.	Parent=Os10t0369950-00
Chr10	irgsp1_rep	mRNA	11629767	11634486	.	-	.	ID=Os10t0370000-01;Name=Os10t0370000-01;Locus_id=Os10g0370000;Oryzabase Gene Symbol Synonym(s)=OsPP2C71%2C PP2C71%2C OsPP111;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C71%2C protein phosphatase 2C 71%2C protein phosphatase 111;Note=Protein phosphatase 2C-related domain containing protein.;Transcript_evidence=AK071987 (DDBJ%2C Best hit);ORF_evidence=B6U2F2 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932);NIAS_FLcDNA=J013091J19;Oryzabase=17943;Expression=AK071987;TENOR=Os10t0370000-01;KEGG=Os10t0370000-01
Chr10	irgsp1_rep	five_prime_UTR	11634369	11634486	.	-	.	Parent=Os10t0370000-01
Chr10	irgsp1_rep	CDS	11634203	11634368	.	-	0	Parent=Os10t0370000-01
Chr10	irgsp1_rep	CDS	11633716	11634116	.	-	2	Parent=Os10t0370000-01
Chr10	irgsp1_rep	CDS	11632815	11632876	.	-	0	Parent=Os10t0370000-01
Chr10	irgsp1_rep	CDS	11632468	11632537	.	-	1	Parent=Os10t0370000-01
Chr10	irgsp1_rep	CDS	11632138	11632225	.	-	0	Parent=Os10t0370000-01
Chr10	irgsp1_rep	CDS	11630827	11630996	.	-	2	Parent=Os10t0370000-01
Chr10	irgsp1_rep	CDS	11630570	11630713	.	-	0	Parent=Os10t0370000-01
Chr10	irgsp1_rep	CDS	11630353	11630481	.	-	0	Parent=Os10t0370000-01
Chr10	irgsp1_rep	CDS	11630106	11630273	.	-	0	Parent=Os10t0370000-01
Chr10	irgsp1_rep	three_prime_UTR	11629767	11630105	.	-	.	Parent=Os10t0370000-01
Chr10	irgsp1_rep	mRNA	11629686	11634425	.	-	.	ID=Os10t0370000-02;Name=Os10t0370000-02;Locus_id=Os10g0370000;Oryzabase Gene Symbol Synonym(s)=OsPP2C71%2C PP2C71%2C OsPP111;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C71%2C protein phosphatase 2C 71%2C protein phosphatase 111;Note=Protein phosphatase 2C-related domain containing protein.;Transcript_evidence=AK100049 (DDBJ%2C Best hit);ORF_evidence=B6U2F2 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932);NIAS_FLcDNA=J013155A10;Oryzabase=17943;Expression=AK100049;TENOR=Os10t0370000-02;KEGG=Os10t0370000-02
Chr10	irgsp1_rep	five_prime_UTR	11634369	11634425	.	-	.	Parent=Os10t0370000-02
Chr10	irgsp1_rep	CDS	11634203	11634368	.	-	0	Parent=Os10t0370000-02
Chr10	irgsp1_rep	CDS	11633716	11634116	.	-	2	Parent=Os10t0370000-02
Chr10	irgsp1_rep	CDS	11632815	11632876	.	-	0	Parent=Os10t0370000-02
Chr10	irgsp1_rep	CDS	11632468	11632537	.	-	1	Parent=Os10t0370000-02
Chr10	irgsp1_rep	CDS	11632138	11632225	.	-	0	Parent=Os10t0370000-02
Chr10	irgsp1_rep	CDS	11630827	11630996	.	-	2	Parent=Os10t0370000-02
Chr10	irgsp1_rep	CDS	11630570	11630713	.	-	0	Parent=Os10t0370000-02
Chr10	irgsp1_rep	CDS	11630353	11630481	.	-	0	Parent=Os10t0370000-02
Chr10	irgsp1_rep	CDS	11630106	11630273	.	-	0	Parent=Os10t0370000-02
Chr10	irgsp1_rep	three_prime_UTR	11629686	11630105	.	-	.	Parent=Os10t0370000-02
Chr10	irgsp1_rep	mRNA	11649756	11659326	.	-	.	ID=Os10t0370100-01;Name=Os10t0370100-01;Locus_id=Os10g0370100;Note=NB-ARC domain containing protein.;Transcript_evidence=AK100740 (DDBJ%2C Best hit);ORF_evidence=Q109S2 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J023118D09;Oryzabase=14969;Expression=AK100740;TENOR=Os10t0370100-01;KEGG=Os10t0370100-01
Chr10	irgsp1_rep	five_prime_UTR	11659142	11659326	.	-	.	Parent=Os10t0370100-01
Chr10	irgsp1_rep	five_prime_UTR	11659059	11659060	.	-	.	Parent=Os10t0370100-01
Chr10	irgsp1_rep	CDS	11658217	11659058	.	-	0	Parent=Os10t0370100-01
Chr10	irgsp1_rep	CDS	11654997	11657174	.	-	1	Parent=Os10t0370100-01
Chr10	irgsp1_rep	CDS	11654800	11654840	.	-	1	Parent=Os10t0370100-01
Chr10	irgsp1_rep	CDS	11650680	11650969	.	-	2	Parent=Os10t0370100-01
Chr10	irgsp1_rep	CDS	11650351	11650566	.	-	0	Parent=Os10t0370100-01
Chr10	irgsp1_rep	CDS	11649918	11650244	.	-	0	Parent=Os10t0370100-01
Chr10	irgsp1_rep	three_prime_UTR	11649756	11649917	.	-	.	Parent=Os10t0370100-01
Chr10	irgsp1_rep	mRNA	11649673	11657087	.	-	.	ID=Os10t0370100-02;Name=Os10t0370100-02;Locus_id=Os10g0370100;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=AK066788 (DDBJ%2C Best hit);ORF_evidence=Q109S2 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);NIAS_FLcDNA=J013087A12;Oryzabase=14969;Expression=AK066788;TENOR=Os10t0370100-02;KEGG=Os10t0370100-02
Chr10	irgsp1_rep	five_prime_UTR	11657087	11657087	.	-	.	Parent=Os10t0370100-02
Chr10	irgsp1_rep	CDS	11654997	11657086	.	-	0	Parent=Os10t0370100-02
Chr10	irgsp1_rep	CDS	11654800	11654840	.	-	1	Parent=Os10t0370100-02
Chr10	irgsp1_rep	CDS	11650680	11650969	.	-	2	Parent=Os10t0370100-02
Chr10	irgsp1_rep	CDS	11650351	11650566	.	-	0	Parent=Os10t0370100-02
Chr10	irgsp1_rep	CDS	11649918	11650244	.	-	0	Parent=Os10t0370100-02
Chr10	irgsp1_rep	three_prime_UTR	11649673	11649917	.	-	.	Parent=Os10t0370100-02
Chr10	irgsp1_rep	mRNA	11655261	11659037	.	+	.	ID=Os10t0370200-00;Name=Os10t0370200-00;Locus_id=Os10g0370200;Note=Hypothetical protein.;Transcript_evidence=tplb0021d08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0370200-00
Chr10	irgsp1_rep	five_prime_UTR	11655261	11657152	.	+	.	Parent=Os10t0370200-00
Chr10	irgsp1_rep	five_prime_UTR	11658196	11658614	.	+	.	Parent=Os10t0370200-00
Chr10	irgsp1_rep	CDS	11658615	11658953	.	+	0	Parent=Os10t0370200-00
Chr10	irgsp1_rep	three_prime_UTR	11658954	11659037	.	+	.	Parent=Os10t0370200-00
Chr10	irgsp1_rep	mRNA	11657676	11657792	.	-	.	ID=Os10t0370300-00;Name=Os10t0370300-00;Locus_id=Os10g0370300;Note=Non-protein coding transcript.;Transcript_evidence=EU942692 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0370300-00
Chr10	irgsp1_rep	exon	11657676	11657792	.	-	.	Parent=Os10t0370300-00
Chr10	irgsp1_rep	mRNA	11662601	11666585	.	+	.	ID=Os10t0370400-01;Name=Os10t0370400-01;Locus_id=Os10g0370400;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=AK067524 (DDBJ%2C Best hit);ORF_evidence=Q2R4S9 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);NIAS_FLcDNA=J013108I15;Expression=AK067524;TENOR=Os10t0370400-01;KEGG=Os10t0370400-01
Chr10	irgsp1_rep	five_prime_UTR	11662601	11662715	.	+	.	Parent=Os10t0370400-01
Chr10	irgsp1_rep	CDS	11662716	11663492	.	+	0	Parent=Os10t0370400-01
Chr10	irgsp1_rep	three_prime_UTR	11663493	11663773	.	+	.	Parent=Os10t0370400-01
Chr10	irgsp1_rep	three_prime_UTR	11663998	11666585	.	+	.	Parent=Os10t0370400-01
Chr10	irgsp1_rep	mRNA	11666794	11673481	.	-	.	ID=Os10t0370500-01;Name=Os10t0370500-01;Locus_id=Os10g0370500;Oryzabase Gene Name Synonym(s)=glucan-1%2C 3-beta-glucosidase;Note=Glycoside hydrolase%2C catalytic core domain containing protein.;Transcript_evidence=AK065000 (DDBJ%2C Best hit);ORF_evidence=Q8RU51 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 5 (IPR001547),Actin cross-linking (IPR008999),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 5%2C conserved site (IPR018087);NIAS_FLcDNA=J013001E03;Oryzabase=19103;TENOR=Os10t0370500-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	11673448	11673481	.	-	.	Parent=Os10t0370500-01
Chr10	irgsp1_rep	CDS	11673247	11673447	.	-	0	Parent=Os10t0370500-01
Chr10	irgsp1_rep	CDS	11672836	11673144	.	-	0	Parent=Os10t0370500-01
Chr10	irgsp1_rep	CDS	11671128	11671286	.	-	0	Parent=Os10t0370500-01
Chr10	irgsp1_rep	CDS	11669202	11669371	.	-	0	Parent=Os10t0370500-01
Chr10	irgsp1_rep	CDS	11668816	11668971	.	-	1	Parent=Os10t0370500-01
Chr10	irgsp1_rep	CDS	11667623	11667972	.	-	1	Parent=Os10t0370500-01
Chr10	irgsp1_rep	CDS	11667041	11667228	.	-	2	Parent=Os10t0370500-01
Chr10	irgsp1_rep	three_prime_UTR	11666794	11667040	.	-	.	Parent=Os10t0370500-01
Chr10	irgsp1_rep	mRNA	11672863	11673589	.	+	.	ID=Os10t0370600-01;Name=Os10t0370600-01;Locus_id=Os10g0370600;Note=Hypothetical protein.;Transcript_evidence=AK062606 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-105-A03;TENOR=Os10t0370600-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	11672863	11672863	.	+	.	Parent=Os10t0370600-01
Chr10	irgsp1_rep	CDS	11672864	11673099	.	+	0	Parent=Os10t0370600-01
Chr10	irgsp1_rep	CDS	11673250	11673523	.	+	1	Parent=Os10t0370600-01
Chr10	irgsp1_rep	three_prime_UTR	11673524	11673589	.	+	.	Parent=Os10t0370600-01
Chr10	irgsp1_rep	mRNA	11691235	11695039	.	-	.	ID=Os10t0370700-01;Name=Os10t0370700-01;Locus_id=Os10g0370700;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Similar to Nitrate transporter (Fragment).;Transcript_evidence=AK065895 (DDBJ%2C Best hit);ORF_evidence=B6U0T7 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),PTR2 family proton/oligopeptide symporter%2C conserved site (IPR018456);NIAS_FLcDNA=J013049E13;Oryzabase=23687;Expression=AK065895;TENOR=Os10t0370700-01;KEGG=Os10t0370700-01
Chr10	irgsp1_rep	five_prime_UTR	11693951	11695039	.	-	.	Parent=Os10t0370700-01
Chr10	irgsp1_rep	CDS	11693900	11693950	.	-	0	Parent=Os10t0370700-01
Chr10	irgsp1_rep	CDS	11693556	11693658	.	-	0	Parent=Os10t0370700-01
Chr10	irgsp1_rep	CDS	11693241	11693458	.	-	2	Parent=Os10t0370700-01
Chr10	irgsp1_rep	CDS	11692621	11693147	.	-	0	Parent=Os10t0370700-01
Chr10	irgsp1_rep	CDS	11691429	11692242	.	-	1	Parent=Os10t0370700-01
Chr10	irgsp1_rep	three_prime_UTR	11691235	11691428	.	-	.	Parent=Os10t0370700-01
Chr10	irgsp1_rep	mRNA	11691461	11693661	.	+	.	ID=Os10t0370750-00;Name=Os10t0370750-00;Locus_id=Os10g0370750;Note=Hypothetical protein.;Transcript_evidence=tplb0058e01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0370750-00
Chr10	irgsp1_rep	five_prime_UTR	11691461	11691536	.	+	.	Parent=Os10t0370750-00
Chr10	irgsp1_rep	CDS	11691537	11692265	.	+	0	Parent=Os10t0370750-00
Chr10	irgsp1_rep	CDS	11692661	11692807	.	+	0	Parent=Os10t0370750-00
Chr10	irgsp1_rep	three_prime_UTR	11692808	11693116	.	+	.	Parent=Os10t0370750-00
Chr10	irgsp1_rep	three_prime_UTR	11693202	11693467	.	+	.	Parent=Os10t0370750-00
Chr10	irgsp1_rep	three_prime_UTR	11693567	11693661	.	+	.	Parent=Os10t0370750-00
Chr10	irgsp1_rep	mRNA	11698993	11713558	.	-	.	ID=Os10t0370800-01;Name=Os10t0370800-01;Locus_id=Os10g0370800;Note=Similar to Exo-1%2C3-beta-glucanase precursor (EC 3.2.1.58) (Fragment).;Transcript_evidence=AK122082 (DDBJ%2C Best hit);ORF_evidence=Q8RU06 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: protein binding%2C bridging (GO:0030674),Molecular Function: cation binding (GO:0043169),Molecular Function: actin filament binding (GO:0051015);InterPro=Glycoside hydrolase%2C family 5 (IPR001547),Actin cross-linking (IPR008999),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 5%2C conserved site (IPR018087),Fascin domain (IPR022768);NIAS_FLcDNA=J033121I23;Expression=AK122082;TENOR=Os10t0370800-01;KEGG=Os10t0370800-01 (EC:3.2.1.58)
Chr10	irgsp1_rep	five_prime_UTR	11713484	11713558	.	-	.	Parent=Os10t0370800-01
Chr10	irgsp1_rep	CDS	11713355	11713483	.	-	0	Parent=Os10t0370800-01
Chr10	irgsp1_rep	CDS	11712634	11712951	.	-	0	Parent=Os10t0370800-01
Chr10	irgsp1_rep	CDS	11711497	11711655	.	-	0	Parent=Os10t0370800-01
Chr10	irgsp1_rep	CDS	11708377	11708546	.	-	0	Parent=Os10t0370800-01
Chr10	irgsp1_rep	CDS	11708063	11708218	.	-	1	Parent=Os10t0370800-01
Chr10	irgsp1_rep	CDS	11707608	11707960	.	-	1	Parent=Os10t0370800-01
Chr10	irgsp1_rep	CDS	11706869	11707155	.	-	2	Parent=Os10t0370800-01
Chr10	irgsp1_rep	CDS	11706399	11706707	.	-	0	Parent=Os10t0370800-01
Chr10	irgsp1_rep	CDS	11704986	11705144	.	-	0	Parent=Os10t0370800-01
Chr10	irgsp1_rep	CDS	11704331	11704500	.	-	0	Parent=Os10t0370800-01
Chr10	irgsp1_rep	CDS	11703976	11704131	.	-	1	Parent=Os10t0370800-01
Chr10	irgsp1_rep	CDS	11703522	11703871	.	-	1	Parent=Os10t0370800-01
Chr10	irgsp1_rep	CDS	11702978	11703273	.	-	2	Parent=Os10t0370800-01
Chr10	irgsp1_rep	CDS	11702553	11702861	.	-	0	Parent=Os10t0370800-01
Chr10	irgsp1_rep	CDS	11701603	11701761	.	-	0	Parent=Os10t0370800-01
Chr10	irgsp1_rep	CDS	11700522	11700691	.	-	0	Parent=Os10t0370800-01
Chr10	irgsp1_rep	CDS	11700134	11700289	.	-	1	Parent=Os10t0370800-01
Chr10	irgsp1_rep	CDS	11699686	11700041	.	-	1	Parent=Os10t0370800-01
Chr10	irgsp1_rep	CDS	11699271	11699458	.	-	2	Parent=Os10t0370800-01
Chr10	irgsp1_rep	three_prime_UTR	11698993	11699270	.	-	.	Parent=Os10t0370800-01
Chr10	irgsp1_rep	mRNA	11698993	11703874	.	-	.	ID=Os10t0370800-02;Name=Os10t0370800-02;Locus_id=Os10g0370800;Note=Similar to cellulase containing protein.;Transcript_evidence=AK060558 (DDBJ%2C Best hit);ORF_evidence=Q8RU06 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: protein binding%2C bridging (GO:0030674),Molecular Function: cation binding (GO:0043169),Molecular Function: actin filament binding (GO:0051015);InterPro=Glycoside hydrolase%2C family 5 (IPR001547),Actin cross-linking (IPR008999),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Fascin domain (IPR022768);NIAS_FLcDNA=001-022-E05;Expression=AK060558;TENOR=Os10t0370800-02;KEGG=Os10t0370800-02 (EC:3.2.1.58)
Chr10	irgsp1_rep	five_prime_UTR	11703718	11703874	.	-	.	Parent=Os10t0370800-02
Chr10	irgsp1_rep	CDS	11703522	11703717	.	-	0	Parent=Os10t0370800-02
Chr10	irgsp1_rep	CDS	11702978	11703273	.	-	2	Parent=Os10t0370800-02
Chr10	irgsp1_rep	CDS	11702553	11702861	.	-	0	Parent=Os10t0370800-02
Chr10	irgsp1_rep	CDS	11701603	11701761	.	-	0	Parent=Os10t0370800-02
Chr10	irgsp1_rep	CDS	11700522	11700691	.	-	0	Parent=Os10t0370800-02
Chr10	irgsp1_rep	CDS	11700134	11700289	.	-	1	Parent=Os10t0370800-02
Chr10	irgsp1_rep	CDS	11699686	11700041	.	-	1	Parent=Os10t0370800-02
Chr10	irgsp1_rep	CDS	11699271	11699458	.	-	2	Parent=Os10t0370800-02
Chr10	irgsp1_rep	three_prime_UTR	11698993	11699270	.	-	.	Parent=Os10t0370800-02
Chr10	irgsp1_rep	mRNA	11723427	11726359	.	+	.	ID=Os10t0371000-01;Name=Os10t0371000-01;Locus_id=Os10g0371000;RAP-DB Gene Symbol Synonym(s)=OsEXTL;RAP-DB Gene Name Synonym(s)=OsExtensin-like gene;Oryzabase Gene Symbol Synonym(s)=OsEXTL%2C EXTL;Oryzabase Gene Name Synonym(s)=OsExtensin-like gene%2C Extensin-like gene;Note=Extensin-like protein%2C Lodging resistance%2C Regulation of cell elongation and cell wall thickening;Transcript_evidence=AK119798,AK070069;ORF_evidence=Q8RU50;NIAS_FLcDNA=002-175-H05,J023042I17;Manual Curation=May 15%2C 2020;Literature_PMID=28574641;Oryzabase=21811;TENOR=Os10t0371000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	11723427	11723532	.	+	.	Parent=Os10t0371000-01
Chr10	irgsp1_rep	CDS	11723533	11723719	.	+	0	Parent=Os10t0371000-01
Chr10	irgsp1_rep	CDS	11725809	11726140	.	+	2	Parent=Os10t0371000-01
Chr10	irgsp1_rep	three_prime_UTR	11726141	11726359	.	+	.	Parent=Os10t0371000-01
Chr10	irgsp1_rep	mRNA	11731475	11732720	.	+	.	ID=Os10t0371100-00;Name=Os10t0371100-00;Locus_id=Os10g0371100;CGSNL Gene Symbol=ERF51;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 51;Oryzabase Gene Symbol Synonym(s)=OsERF#051%2C OsERF051%2C OsERF51%2C DERF11%2C OsDERF11%2C AP2/EREBP#156%2C AP2/EREBP156;Oryzabase Gene Name Synonym(s)=drought-responsive ethylene response factor 11%2C drought-responsive ERF 11%2C ethylene response factor 51%2C APETALA2/ethylene-responsive element binding protein 156;Note=Similar to AP2 domain containing protein%2C expressed.;Transcript_evidence=FP098494 (DDBJ);ORF_evidence=Q8S5S4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);Oryzabase=9697;TENOR=Os10t0371100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	11731475	11732557	.	+	0	Parent=Os10t0371100-00
Chr10	irgsp1_rep	three_prime_UTR	11732558	11732720	.	+	.	Parent=Os10t0371100-00
Chr10	irgsp1_rep	mRNA	11737407	11739004	.	-	.	ID=Os10t0371200-01;Name=Os10t0371200-01;Locus_id=Os10g0371200;Note=Conserved hypothetical protein.;Transcript_evidence=AK107154 (DDBJ%2C Best hit);ORF_evidence=B8AZM6 (UniProt);NIAS_FLcDNA=002-124-E06;TENOR=Os10t0371200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	11739003	11739004	.	-	.	Parent=Os10t0371200-01
Chr10	irgsp1_rep	CDS	11738822	11739002	.	-	0	Parent=Os10t0371200-01
Chr10	irgsp1_rep	CDS	11738584	11738738	.	-	2	Parent=Os10t0371200-01
Chr10	irgsp1_rep	three_prime_UTR	11738566	11738583	.	-	.	Parent=Os10t0371200-01
Chr10	irgsp1_rep	three_prime_UTR	11737407	11738446	.	-	.	Parent=Os10t0371200-01
Chr10	irgsp1_rep	mRNA	11784282	11788237	.	-	.	ID=Os10t0372100-01;Name=Os10t0372100-01;Locus_id=Os10g0372100;Note=Conserved hypothetical protein.;Transcript_evidence=AK069144 (DDBJ%2C Best hit);ORF_evidence=B9G5E9 (UniProt);NIAS_FLcDNA=J023005J09;Expression=AK069144;TENOR=Os10t0372100-01;KEGG=Os10t0372100-01
Chr10	irgsp1_rep	five_prime_UTR	11788200	11788237	.	-	.	Parent=Os10t0372100-01
Chr10	irgsp1_rep	CDS	11787930	11788199	.	-	0	Parent=Os10t0372100-01
Chr10	irgsp1_rep	CDS	11787600	11787602	.	-	0	Parent=Os10t0372100-01
Chr10	irgsp1_rep	three_prime_UTR	11784282	11787599	.	-	.	Parent=Os10t0372100-01
Chr10	irgsp1_rep	mRNA	11791821	11792120	.	+	.	ID=Os10t0372300-00;Name=Os10t0372300-00;Locus_id=Os10g0372300;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3C449 (UniProt);TENOR=Os10t0372300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	11791821	11792120	.	+	0	Parent=Os10t0372300-00
Chr10	irgsp1_rep	mRNA	11792727	11793061	.	-	.	ID=Os10t0372366-00;Name=Os10t0372366-00;Locus_id=Os10g0372366;Note=Hypothetical protein.;Transcript_evidence=FP101809 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0372366-00
Chr10	irgsp1_rep	CDS	11792727	11793061	.	-	0	Parent=Os10t0372366-00
Chr10	irgsp1_rep	mRNA	11794765	11794832	.	-	.	ID=Os10t0372432-00;Name=Os10t0372432-00;Locus_id=Os10g0372432;Note=Non-protein coding transcript.;Transcript_evidence=X06284 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0372432-00
Chr10	irgsp1_rep	exon	11794765	11794832	.	-	.	Parent=Os10t0372432-00
Chr10	irgsp1_rep	mRNA	11796227	11798087	.	+	.	ID=Os10t0372500-00;Name=Os10t0372500-00;Locus_id=Os10g0372500;Note=Hypothetical protein.;Transcript_evidence=AK354720 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0372500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	11796227	11796328	.	+	.	Parent=Os10t0372500-00
Chr10	irgsp1_rep	CDS	11796329	11797471	.	+	0	Parent=Os10t0372500-00
Chr10	irgsp1_rep	CDS	11797763	11797909	.	+	0	Parent=Os10t0372500-00
Chr10	irgsp1_rep	three_prime_UTR	11797910	11798087	.	+	.	Parent=Os10t0372500-00
Chr10	irgsp1_rep	mRNA	11803428	11805344	.	+	.	ID=Os10t0372700-00;Name=Os10t0372700-00;Locus_id=Os10g0372700;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8S5C6 (UniProt);InterPro=Protein of unknown function DUF3615 (IPR022059);TENOR=Os10t0372700-00;KEGG=Os10t0372700-00
Chr10	irgsp1_rep	CDS	11803428	11803492	.	+	0	Parent=Os10t0372700-00
Chr10	irgsp1_rep	CDS	11804019	11804671	.	+	1	Parent=Os10t0372700-00
Chr10	irgsp1_rep	CDS	11805238	11805344	.	+	2	Parent=Os10t0372700-00
Chr10	irgsp1_rep	mRNA	11807697	11811899	.	-	.	ID=Os10t0372800-01;Name=Os10t0372800-01;Locus_id=Os10g0372800;Note=Conserved hypothetical protein.;Transcript_evidence=AK064552 (DDBJ%2C Best hit);ORF_evidence=Q7G376 (UniProt);NIAS_FLcDNA=002-112-C01;Expression=AK064552;TENOR=Os10t0372800-01;KEGG=Os10t0372800-01
Chr10	irgsp1_rep	five_prime_UTR	11811899	11811899	.	-	.	Parent=Os10t0372800-01
Chr10	irgsp1_rep	CDS	11811826	11811898	.	-	0	Parent=Os10t0372800-01
Chr10	irgsp1_rep	CDS	11811677	11811757	.	-	2	Parent=Os10t0372800-01
Chr10	irgsp1_rep	CDS	11811221	11811275	.	-	2	Parent=Os10t0372800-01
Chr10	irgsp1_rep	CDS	11809225	11809738	.	-	1	Parent=Os10t0372800-01
Chr10	irgsp1_rep	CDS	11809046	11809147	.	-	0	Parent=Os10t0372800-01
Chr10	irgsp1_rep	CDS	11808907	11808931	.	-	0	Parent=Os10t0372800-01
Chr10	irgsp1_rep	CDS	11808713	11808828	.	-	2	Parent=Os10t0372800-01
Chr10	irgsp1_rep	three_prime_UTR	11808329	11808712	.	-	.	Parent=Os10t0372800-01
Chr10	irgsp1_rep	three_prime_UTR	11807889	11808154	.	-	.	Parent=Os10t0372800-01
Chr10	irgsp1_rep	three_prime_UTR	11807697	11807812	.	-	.	Parent=Os10t0372800-01
Chr10	irgsp1_rep	mRNA	11825931	11826899	.	+	.	ID=Os10t0373400-01;Name=Os10t0373400-01;Locus_id=Os10g0373400;Note=Hypothetical protein.;Transcript_evidence=AK108902 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=002-152-F07;TENOR=Os10t0373400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	11825931	11825931	.	+	.	Parent=Os10t0373400-01
Chr10	irgsp1_rep	CDS	11825932	11826201	.	+	0	Parent=Os10t0373400-01
Chr10	irgsp1_rep	CDS	11826288	11826461	.	+	0	Parent=Os10t0373400-01
Chr10	irgsp1_rep	three_prime_UTR	11826462	11826899	.	+	.	Parent=Os10t0373400-01
Chr10	irgsp1_rep	mRNA	11863947	11865368	.	-	.	ID=Os10t0374200-00;Name=Os10t0374200-00;Locus_id=Os10g0374200;Note=Paired amphipathic helix domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001176121.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634);InterPro=Paired amphipathic helix (IPR003822);TENOR=Os10t0374200-00;KEGG=Os10t0374200-00
Chr10	irgsp1_rep	CDS	11865268	11865368	.	-	0	Parent=Os10t0374200-00
Chr10	irgsp1_rep	CDS	11863947	11865228	.	-	1	Parent=Os10t0374200-00
Chr10	irgsp1_rep	mRNA	11874009	11877350	.	-	.	ID=Os10t0374450-00;Name=Os10t0374450-00;Locus_id=Os10g0374450;Note=Similar to Barren inflorescence2-like serine/threonine protein kinase (Fragment).;Transcript_evidence=AK363349 (DDBJ);ORF_evidence=A5A493 (UniProt);TENOR=Os10t0374450-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	11877059	11877350	.	-	.	Parent=Os10t0374450-00
Chr10	irgsp1_rep	CDS	11876542	11877058	.	-	0	Parent=Os10t0374450-00
Chr10	irgsp1_rep	CDS	11874030	11874166	.	-	2	Parent=Os10t0374450-00
Chr10	irgsp1_rep	three_prime_UTR	11874009	11874029	.	-	.	Parent=Os10t0374450-00
Chr10	irgsp1_rep	mRNA	11880133	11883412	.	+	.	ID=Os10t0374600-00;Name=Os10t0374600-00;Locus_id=Os10g0374600;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8RU46 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os10t0374600-00;KEGG=Os10t0374600-00
Chr10	irgsp1_rep	CDS	11880133	11882977	.	+	0	Parent=Os10t0374600-00
Chr10	irgsp1_rep	CDS	11883054	11883412	.	+	2	Parent=Os10t0374600-00
Chr10	irgsp1_rep	mRNA	11879912	11885455	.	-	.	ID=Os10t0374700-01;Name=Os10t0374700-01;Locus_id=Os10g0374700;Note=Hypothetical protein.;Transcript_evidence=AK067540 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J013111J05;TENOR=Os10t0374700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	11885454	11885455	.	-	.	Parent=Os10t0374700-01
Chr10	irgsp1_rep	CDS	11885217	11885453	.	-	0	Parent=Os10t0374700-01
Chr10	irgsp1_rep	CDS	11884140	11884256	.	-	0	Parent=Os10t0374700-01
Chr10	irgsp1_rep	three_prime_UTR	11884083	11884139	.	-	.	Parent=Os10t0374700-01
Chr10	irgsp1_rep	three_prime_UTR	11883885	11883945	.	-	.	Parent=Os10t0374700-01
Chr10	irgsp1_rep	three_prime_UTR	11880375	11883331	.	-	.	Parent=Os10t0374700-01
Chr10	irgsp1_rep	three_prime_UTR	11879912	11880283	.	-	.	Parent=Os10t0374700-01
Chr10	irgsp1_rep	mRNA	11893675	11899916	.	+	.	ID=Os10t0375000-01;Name=Os10t0375000-01;Locus_id=Os10g0375000;Oryzabase Gene Symbol Synonym(s)=YK19;Note=Hypothetical conserved gene.;Transcript_evidence=AK241161 (DDBJ%2C Best hit);ORF_evidence=B9G5F7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J065115L14;Oryzabase=15189;TENOR=Os10t0375000-01;KEGG=Os10t0375000-01
Chr10	irgsp1_rep	five_prime_UTR	11893675	11893824	.	+	.	Parent=Os10t0375000-01
Chr10	irgsp1_rep	five_prime_UTR	11893933	11893994	.	+	.	Parent=Os10t0375000-01
Chr10	irgsp1_rep	five_prime_UTR	11896358	11896458	.	+	.	Parent=Os10t0375000-01
Chr10	irgsp1_rep	CDS	11896459	11899282	.	+	0	Parent=Os10t0375000-01
Chr10	irgsp1_rep	CDS	11899354	11899715	.	+	2	Parent=Os10t0375000-01
Chr10	irgsp1_rep	three_prime_UTR	11899716	11899916	.	+	.	Parent=Os10t0375000-01
Chr10	irgsp1_rep	mRNA	11896546	11899528	.	-	.	ID=Os10t0375200-00;Name=Os10t0375200-00;Locus_id=Os10g0375200;Note=Hypothetical protein.;Transcript_evidence=tplb0061a11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0375200-00
Chr10	irgsp1_rep	five_prime_UTR	11899351	11899528	.	-	.	Parent=Os10t0375200-00
Chr10	irgsp1_rep	five_prime_UTR	11898372	11899279	.	-	.	Parent=Os10t0375200-00
Chr10	irgsp1_rep	CDS	11897328	11898371	.	-	0	Parent=Os10t0375200-00
Chr10	irgsp1_rep	three_prime_UTR	11896850	11897327	.	-	.	Parent=Os10t0375200-00
Chr10	irgsp1_rep	three_prime_UTR	11896546	11896776	.	-	.	Parent=Os10t0375200-00
Chr10	irgsp1_rep	mRNA	11918620	11919360	.	+	.	ID=Os10t0375400-00;Name=Os10t0375400-00;Locus_id=Os10g0375400;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=X79130 (DDBJ);ORF_evidence=Q8S5G6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);TENOR=Os10t0375400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	11918620	11919360	.	+	0	Parent=Os10t0375400-00
Chr10	irgsp1_rep	mRNA	11935817	11936749	.	-	.	ID=Os10t0375501-00;Name=Os10t0375501-00;Locus_id=Os10g0375501;Note=Non-protein coding transcript.;Transcript_evidence=BT087030 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0375501-00
Chr10	irgsp1_rep	exon	11936617	11936749	.	-	.	Parent=Os10t0375501-00
Chr10	irgsp1_rep	exon	11935817	11935856	.	-	.	Parent=Os10t0375501-00
Chr10	irgsp1_rep	mRNA	11935626	11942860	.	+	.	ID=Os10t0375600-01;Name=Os10t0375600-01;Locus_id=Os10g0375600;CGSNL Gene Symbol=CAMTA3;CGSNL Gene Name=CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3;Oryzabase Gene Symbol Synonym(s)=OsCAMTA3;Oryzabase Gene Name Synonym(s)=CaM-binding transcription factor homolog%2C OsCBT homolog%2C CBT homolog%2C Calmodulin-binding transcription activator 3;Note=Similar to ER66 protein (Fragment).;Transcript_evidence=AK101479 (DDBJ%2C Best hit),AK105116 (DDBJ%2C Best hit);ORF_evidence=B9G5F9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein binding (GO:0005515),Molecular Function: calmodulin binding (GO:0005516);InterPro=IQ motif%2C EF-hand binding site (IPR000048),Ankyrin repeat (IPR002110),Cell surface receptor IPT/TIG (IPR002909),CG-1 (IPR005559),Immunoglobulin-like fold (IPR013783),Immunoglobulin E-set (IPR014756),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J033041A20,001-100-H10;Oryzabase=19604;TENOR=Os10t0375600-01
Chr10	irgsp1_rep	five_prime_UTR	11935626	11935811	.	+	.	Parent=Os10t0375600-01
Chr10	irgsp1_rep	CDS	11935812	11935860	.	+	0	Parent=Os10t0375600-01
Chr10	irgsp1_rep	CDS	11936619	11936738	.	+	2	Parent=Os10t0375600-01
Chr10	irgsp1_rep	CDS	11937635	11937750	.	+	2	Parent=Os10t0375600-01
Chr10	irgsp1_rep	CDS	11937822	11937910	.	+	0	Parent=Os10t0375600-01
Chr10	irgsp1_rep	CDS	11938110	11938152	.	+	1	Parent=Os10t0375600-01
Chr10	irgsp1_rep	CDS	11938993	11939137	.	+	0	Parent=Os10t0375600-01
Chr10	irgsp1_rep	CDS	11939266	11939385	.	+	2	Parent=Os10t0375600-01
Chr10	irgsp1_rep	CDS	11939464	11939783	.	+	2	Parent=Os10t0375600-01
Chr10	irgsp1_rep	CDS	11939994	11940368	.	+	0	Parent=Os10t0375600-01
Chr10	irgsp1_rep	CDS	11940473	11941167	.	+	0	Parent=Os10t0375600-01
Chr10	irgsp1_rep	CDS	11941261	11941804	.	+	1	Parent=Os10t0375600-01
Chr10	irgsp1_rep	CDS	11942035	11942379	.	+	0	Parent=Os10t0375600-01
Chr10	irgsp1_rep	CDS	11942496	11942606	.	+	0	Parent=Os10t0375600-01
Chr10	irgsp1_rep	three_prime_UTR	11942607	11942860	.	+	.	Parent=Os10t0375600-01
Chr10	irgsp1_rep	mRNA	11947795	11951030	.	+	.	ID=Os10t0375700-01;Name=Os10t0375700-01;Locus_id=Os10g0375700;Note=Alpha/beta hydrolase fold-1 domain containing protein.;Transcript_evidence=AK068318 (DDBJ%2C Best hit);ORF_evidence=NP_001149884.1 (RefSeq);NIAS_FLcDNA=J013151L12;Expression=AK068318;TENOR=Os10t0375700-01;KEGG=Os10t0375700-01
Chr10	irgsp1_rep	CDS	11947795	11947956	.	+	0	Parent=Os10t0375700-01
Chr10	irgsp1_rep	CDS	11950249	11950341	.	+	0	Parent=Os10t0375700-01
Chr10	irgsp1_rep	CDS	11950436	11950503	.	+	0	Parent=Os10t0375700-01
Chr10	irgsp1_rep	CDS	11950570	11950708	.	+	1	Parent=Os10t0375700-01
Chr10	irgsp1_rep	CDS	11950876	11950953	.	+	0	Parent=Os10t0375700-01
Chr10	irgsp1_rep	three_prime_UTR	11950954	11951030	.	+	.	Parent=Os10t0375700-01
Chr10	irgsp1_rep	mRNA	11981020	11986066	.	+	.	ID=Os10t0376200-01;Name=Os10t0376200-01;Locus_id=Os10g0376200;Note=Leucine-rich repeat%2C typical subtype containing protein.;Transcript_evidence=AK121005 (DDBJ%2C Best hit);ORF_evidence=B6SWQ3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591);NIAS_FLcDNA=J023045N14;Expression=AK121005;TENOR=Os10t0376200-01;KEGG=Os10t0376200-01
Chr10	irgsp1_rep	five_prime_UTR	11981020	11981170	.	+	.	Parent=Os10t0376200-01
Chr10	irgsp1_rep	five_prime_UTR	11982346	11982545	.	+	.	Parent=Os10t0376200-01
Chr10	irgsp1_rep	five_prime_UTR	11982625	11982630	.	+	.	Parent=Os10t0376200-01
Chr10	irgsp1_rep	CDS	11982631	11982687	.	+	0	Parent=Os10t0376200-01
Chr10	irgsp1_rep	CDS	11982770	11984009	.	+	0	Parent=Os10t0376200-01
Chr10	irgsp1_rep	CDS	11984147	11984293	.	+	2	Parent=Os10t0376200-01
Chr10	irgsp1_rep	CDS	11985347	11985837	.	+	2	Parent=Os10t0376200-01
Chr10	irgsp1_rep	three_prime_UTR	11985838	11986066	.	+	.	Parent=Os10t0376200-01
Chr10	irgsp1_rep	mRNA	11987939	11987995	.	-	.	ID=Os10t0376301-00;Name=Os10t0376301-00;Locus_id=Os10g0376301;Note=Non-protein coding transcript.;Transcript_evidence=EU943375 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0376301-00
Chr10	irgsp1_rep	exon	11987939	11987995	.	-	.	Parent=Os10t0376301-00
Chr10	irgsp1_rep	mRNA	11989580	11990593	.	+	.	ID=Os10t0376400-00;Name=Os10t0376400-00;Locus_id=Os10g0376400;Note=Similar to Phosphate-induced protein 1 conserved region containing protein.;Transcript_evidence=AK364063 (DDBJ);ORF_evidence=Q7XF93 (UniProt);InterPro=Phosphate-induced protein 1 (IPR006766);TENOR=Os10t0376400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	11989580	11989588	.	+	.	Parent=Os10t0376400-00
Chr10	irgsp1_rep	CDS	11989589	11990593	.	+	0	Parent=Os10t0376400-00
Chr10	irgsp1_rep	mRNA	12015873	12017663	.	+	.	ID=Os10t0376900-01;Name=Os10t0376900-01;Locus_id=Os10g0376900;Oryzabase Gene Symbol Synonym(s)=OsbHLH045;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 045;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=AK058809 (DDBJ%2C Best hit);ORF_evidence=Q8H7N8 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=001-003-C09;Oryzabase=15336;Expression=AK058809;TENOR=Os10t0376900-01;KEGG=Os10t0376900-01
Chr10	irgsp1_rep	five_prime_UTR	12015873	12016026	.	+	.	Parent=Os10t0376900-01
Chr10	irgsp1_rep	CDS	12016027	12016452	.	+	0	Parent=Os10t0376900-01
Chr10	irgsp1_rep	CDS	12016634	12017080	.	+	0	Parent=Os10t0376900-01
Chr10	irgsp1_rep	CDS	12017348	12017461	.	+	0	Parent=Os10t0376900-01
Chr10	irgsp1_rep	three_prime_UTR	12017462	12017663	.	+	.	Parent=Os10t0376900-01
Chr10	irgsp1_rep	mRNA	12021772	12024125	.	+	.	ID=Os10t0377000-01;Name=Os10t0377000-01;Locus_id=Os10g0377000;Note=Conserved hypothetical protein.;Transcript_evidence=AK111349 (DDBJ%2C Best hit);ORF_evidence=B8BGJ0 (UniProt);NIAS_FLcDNA=002-181-G05;Expression=AK111349;TENOR=Os10t0377000-01;KEGG=Os10t0377000-01
Chr10	irgsp1_rep	five_prime_UTR	12021772	12021820	.	+	.	Parent=Os10t0377000-01
Chr10	irgsp1_rep	CDS	12021821	12021972	.	+	0	Parent=Os10t0377000-01
Chr10	irgsp1_rep	CDS	12022071	12022166	.	+	1	Parent=Os10t0377000-01
Chr10	irgsp1_rep	CDS	12022483	12022559	.	+	1	Parent=Os10t0377000-01
Chr10	irgsp1_rep	CDS	12022670	12022878	.	+	2	Parent=Os10t0377000-01
Chr10	irgsp1_rep	CDS	12023736	12023828	.	+	0	Parent=Os10t0377000-01
Chr10	irgsp1_rep	three_prime_UTR	12023829	12024125	.	+	.	Parent=Os10t0377000-01
Chr10	irgsp1_rep	mRNA	12024100	12024661	.	-	.	ID=Os10t0377150-00;Name=Os10t0377150-00;Locus_id=Os10g0377150;CGSNL Gene Symbol=AGP9;CGSNL Gene Name=ARABINOGALACTAN PROTEIN 9;Oryzabase Gene Symbol Synonym(s)=OsAGP9;Oryzabase Gene Name Synonym(s)=Arabinogalactan protein 9;Note=Hypothetical protein.;Transcript_evidence=FP097651 (DDBJ);ORF_evidence=longestORF;Oryzabase=11302;TENOR=Os10t0377150-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	12024116	12024661	.	-	0	Parent=Os10t0377150-00
Chr10	irgsp1_rep	three_prime_UTR	12024100	12024115	.	-	.	Parent=Os10t0377150-00
Chr10	irgsp1_rep	mRNA	12041604	12043091	.	+	.	ID=Os10t0377300-01;Name=Os10t0377300-01;Locus_id=Os10g0377300;CGSNL Gene Symbol=HOX8;CGSNL Gene Name=HOMEOBOX GENE 8;Oryzabase Gene Symbol Synonym(s)=Oshox8;Oryzabase Gene Name Synonym(s)=rice homeobox gene 8%2C Homeobox-leucine zipper protein HOX8%2C Homeodomain transcription factor HOX8%2C HD-ZIP protein HOX8;Note=Similar to Homeobox-leucine zipper protein HOX8.;Transcript_evidence=AK243294 (DDBJ%2C Best hit);ORF_evidence=Q338Z7 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),Leucine zipper%2C homeobox-associated (IPR003106),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Homeobox%2C conserved site (IPR017970);NIAS_FLcDNA=J100053F20;Oryzabase=8471;TENOR=Os10t0377300-01;KEGG=Os10t0377300-01
Chr10	irgsp1_rep	five_prime_UTR	12041604	12041805	.	+	.	Parent=Os10t0377300-01
Chr10	irgsp1_rep	CDS	12041806	12041869	.	+	0	Parent=Os10t0377300-01
Chr10	irgsp1_rep	CDS	12042062	12042915	.	+	2	Parent=Os10t0377300-01
Chr10	irgsp1_rep	three_prime_UTR	12042916	12043091	.	+	.	Parent=Os10t0377300-01
Chr10	irgsp1_rep	mRNA	12048114	12052937	.	-	.	ID=Os10t0377400-01;Name=Os10t0377400-01;Locus_id=Os10g0377400;Oryzabase Gene Symbol Synonym(s)=OsRab11E1;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab11E1;Note=Similar to Ras-related protein Rab11D.;Transcript_evidence=AK111872 (DDBJ%2C Best hit);ORF_evidence=B6TG03 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: intracellular protein transport (GO:0006886),Biological Process: nucleocytoplasmic transport (GO:0006913),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Cellular Component: membrane (GO:0016020),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Ran GTPase (IPR002041),Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C Ras type (IPR020849);NIAS_FLcDNA=J033040K07;Oryzabase=11105;Expression=AK111872;TENOR=Os10t0377400-01;KEGG=Os10t0377400-01
Chr10	irgsp1_rep	five_prime_UTR	12052734	12052937	.	-	.	Parent=Os10t0377400-01
Chr10	irgsp1_rep	CDS	12052521	12052733	.	-	0	Parent=Os10t0377400-01
Chr10	irgsp1_rep	CDS	12048462	12048899	.	-	0	Parent=Os10t0377400-01
Chr10	irgsp1_rep	three_prime_UTR	12048114	12048461	.	-	.	Parent=Os10t0377400-01
Chr10	irgsp1_rep	mRNA	12048153	12052871	.	-	.	ID=Os10t0377400-02;Name=Os10t0377400-02;Locus_id=Os10g0377400;Oryzabase Gene Symbol Synonym(s)=OsRab11E1;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab11E1;Note=Similar to Ras-related protein Rab11D.;Transcript_evidence=AK104132 (DDBJ%2C Best hit);ORF_evidence=B6TG03 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: intracellular protein transport (GO:0006886),Biological Process: nucleocytoplasmic transport (GO:0006913),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Cellular Component: membrane (GO:0016020),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Ran GTPase (IPR002041),Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C Ras type (IPR020849);NIAS_FLcDNA=006-204-D05;Oryzabase=11105;Expression=AK104132;TENOR=Os10t0377400-02;KEGG=Os10t0377400-02
Chr10	irgsp1_rep	five_prime_UTR	12052734	12052871	.	-	.	Parent=Os10t0377400-02
Chr10	irgsp1_rep	CDS	12052521	12052733	.	-	0	Parent=Os10t0377400-02
Chr10	irgsp1_rep	CDS	12048462	12048899	.	-	0	Parent=Os10t0377400-02
Chr10	irgsp1_rep	three_prime_UTR	12048153	12048461	.	-	.	Parent=Os10t0377400-02
Chr10	irgsp1_rep	mRNA	12048113	12048167	.	-	.	ID=Os10t0377400-03;Name=Os10t0377400-03;Locus_id=Os10g0377400;Oryzabase Gene Symbol Synonym(s)=OsRab11E1;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab11E1;Note=Non-protein coding transcript.;Transcript_evidence=AK060484 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-013-B05;Oryzabase=11105;TENOR=Os10t0377400-03
Chr10	irgsp1_rep	exon	12048113	12048167	.	-	.	Parent=Os10t0377400-03
Chr10	irgsp1_rep	mRNA	12048474	12052756	.	+	.	ID=Os10t0377450-00;Name=Os10t0377450-00;Locus_id=Os10g0377450;Note=Hypothetical gene.;Transcript_evidence=BT084300 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0377450-00
Chr10	irgsp1_rep	five_prime_UTR	12048474	12048862	.	+	.	Parent=Os10t0377450-00
Chr10	irgsp1_rep	CDS	12048863	12048885	.	+	0	Parent=Os10t0377450-00
Chr10	irgsp1_rep	CDS	12052514	12052756	.	+	1	Parent=Os10t0377450-00
Chr10	irgsp1_rep	mRNA	12060353	12063575	.	+	.	ID=Os10t0377500-00;Name=Os10t0377500-00;Locus_id=Os10g0377500;Note=Nucleic acid-binding%2C OB-fold domain containing protein.;Transcript_evidence=AK287637 (DDBJ%2C Secondary hit);ORF_evidence=NP_001175163.1 (RefSeq);InterPro=Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);TENOR=Os10t0377500-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	12060353	12060479	.	+	.	Parent=Os10t0377500-00
Chr10	irgsp1_rep	CDS	12060480	12060486	.	+	0	Parent=Os10t0377500-00
Chr10	irgsp1_rep	CDS	12060567	12060839	.	+	2	Parent=Os10t0377500-00
Chr10	irgsp1_rep	CDS	12060933	12060961	.	+	2	Parent=Os10t0377500-00
Chr10	irgsp1_rep	three_prime_UTR	12060962	12061418	.	+	.	Parent=Os10t0377500-00
Chr10	irgsp1_rep	three_prime_UTR	12061505	12061586	.	+	.	Parent=Os10t0377500-00
Chr10	irgsp1_rep	three_prime_UTR	12061673	12061793	.	+	.	Parent=Os10t0377500-00
Chr10	irgsp1_rep	three_prime_UTR	12061878	12062040	.	+	.	Parent=Os10t0377500-00
Chr10	irgsp1_rep	three_prime_UTR	12062120	12062642	.	+	.	Parent=Os10t0377500-00
Chr10	irgsp1_rep	three_prime_UTR	12062865	12062944	.	+	.	Parent=Os10t0377500-00
Chr10	irgsp1_rep	three_prime_UTR	12063029	12063115	.	+	.	Parent=Os10t0377500-00
Chr10	irgsp1_rep	three_prime_UTR	12063196	12063575	.	+	.	Parent=Os10t0377500-00
Chr10	irgsp1_rep	mRNA	12067829	12073660	.	-	.	ID=Os10t0377800-01;Name=Os10t0377800-01;Locus_id=Os10g0377800;CGSNL Gene Symbol=PDX3;CGSNL Gene Name=PYRIDOXAL PHOSPHATE SYNTHASE PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsPDX3;Oryzabase Gene Name Synonym(s)=Pyridoxal phosphate synthase protein 3%2C pyridoxine/pyridoxamine oxidase%2C PN/PM oxidase;Note=Similar to Pyridoxamine 5-phosphate oxidase.;Transcript_evidence=AK066800 (DDBJ%2C Best hit);ORF_evidence=NP_568717.2 (RefSeq);GO=Biological Process: pyridoxine biosynthetic process (GO:0008615),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: pyridoxamine-phosphate oxidase activity (GO:0004733),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-NH2 group of donors (GO:0016638);InterPro=Pyridoxamine 5&apos%3B-phosphate oxidase (IPR000659),YjeF-related protein%2C N-terminal (IPR004443),FMN-binding split barrel-related (IPR009002),Pyridoxamine 5&apos%3B-phosphate oxidase-like%2C FMN-binding domain (IPR011576),FMN-binding split barrel (IPR012349),Pyridoxine 5&apos%3B-phosphate oxidase%2C dimerisation%2C C-terminal (IPR019576),Pyridoxamine 5&apos%3B-phosphate oxidase%2C conserved site (IPR019740),Pyridoxamine 5&apos%3B-phosphate oxidase%2C plant (IPR021198);NIAS_FLcDNA=J013075K07;Oryzabase=23100;TENOR=Os10t0377800-01
Chr10	irgsp1_rep	five_prime_UTR	12073636	12073660	.	-	.	Parent=Os10t0377800-01
Chr10	irgsp1_rep	CDS	12073279	12073635	.	-	0	Parent=Os10t0377800-01
Chr10	irgsp1_rep	CDS	12073153	12073191	.	-	0	Parent=Os10t0377800-01
Chr10	irgsp1_rep	CDS	12071772	12071939	.	-	0	Parent=Os10t0377800-01
Chr10	irgsp1_rep	CDS	12071580	12071685	.	-	0	Parent=Os10t0377800-01
Chr10	irgsp1_rep	CDS	12070724	12070887	.	-	2	Parent=Os10t0377800-01
Chr10	irgsp1_rep	CDS	12070364	12070606	.	-	0	Parent=Os10t0377800-01
Chr10	irgsp1_rep	CDS	12070175	12070263	.	-	0	Parent=Os10t0377800-01
Chr10	irgsp1_rep	CDS	12070028	12070078	.	-	1	Parent=Os10t0377800-01
Chr10	irgsp1_rep	CDS	12069846	12069936	.	-	1	Parent=Os10t0377800-01
Chr10	irgsp1_rep	CDS	12069357	12069461	.	-	0	Parent=Os10t0377800-01
Chr10	irgsp1_rep	CDS	12069155	12069225	.	-	0	Parent=Os10t0377800-01
Chr10	irgsp1_rep	CDS	12068389	12068484	.	-	1	Parent=Os10t0377800-01
Chr10	irgsp1_rep	CDS	12068237	12068303	.	-	1	Parent=Os10t0377800-01
Chr10	irgsp1_rep	three_prime_UTR	12067829	12068236	.	-	.	Parent=Os10t0377800-01
Chr10	irgsp1_rep	mRNA	12067809	12070888	.	-	.	ID=Os10t0377800-02;Name=Os10t0377800-02;Locus_id=Os10g0377800;CGSNL Gene Symbol=PDX3;CGSNL Gene Name=PYRIDOXAL PHOSPHATE SYNTHASE PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsPDX3;Oryzabase Gene Name Synonym(s)=Pyridoxal phosphate synthase protein 3%2C pyridoxine/pyridoxamine oxidase%2C PN/PM oxidase;Note=Similar to predicted protein.;Transcript_evidence=AK104008 (DDBJ%2C Best hit);ORF_evidence=NP_568717.2 (RefSeq);GO=Biological Process: pyridoxine biosynthetic process (GO:0008615),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: pyridoxamine-phosphate oxidase activity (GO:0004733),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-NH2 group of donors (GO:0016638);InterPro=Pyridoxamine 5'-phosphate oxidase (IPR000659),YjeF-related protein%2C N-terminal (IPR004443),FMN-binding split barrel-related (IPR009002),Pyridoxamine 5'-phosphate oxidase-like%2C FMN-binding domain (IPR011576),FMN-binding split barrel (IPR012349),Pyridoxine 5'-phosphate oxidase%2C dimerisation%2C C-terminal (IPR019576),Pyridoxamine 5'-phosphate oxidase%2C conserved site (IPR019740);NIAS_FLcDNA=001-003-B10;Oryzabase=23100;Expression=AK104008;TENOR=Os10t0377800-02;KEGG=Os10t0377800-02 (EC:1.4.3.5)
Chr10	irgsp1_rep	CDS	12070724	12070888	.	-	0	Parent=Os10t0377800-02
Chr10	irgsp1_rep	CDS	12070364	12070606	.	-	0	Parent=Os10t0377800-02
Chr10	irgsp1_rep	CDS	12070175	12070263	.	-	0	Parent=Os10t0377800-02
Chr10	irgsp1_rep	CDS	12070028	12070078	.	-	1	Parent=Os10t0377800-02
Chr10	irgsp1_rep	CDS	12069846	12069936	.	-	1	Parent=Os10t0377800-02
Chr10	irgsp1_rep	CDS	12069357	12069461	.	-	0	Parent=Os10t0377800-02
Chr10	irgsp1_rep	CDS	12069155	12069225	.	-	0	Parent=Os10t0377800-02
Chr10	irgsp1_rep	CDS	12068389	12068484	.	-	1	Parent=Os10t0377800-02
Chr10	irgsp1_rep	CDS	12068237	12068303	.	-	1	Parent=Os10t0377800-02
Chr10	irgsp1_rep	three_prime_UTR	12067809	12068236	.	-	.	Parent=Os10t0377800-02
Chr10	irgsp1_rep	mRNA	12067809	12073561	.	-	.	ID=Os10t0377800-03;Name=Os10t0377800-03;Locus_id=Os10g0377800;CGSNL Gene Symbol=PDX3;CGSNL Gene Name=PYRIDOXAL PHOSPHATE SYNTHASE PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsPDX3;Oryzabase Gene Name Synonym(s)=Pyridoxal phosphate synthase protein 3%2C pyridoxine/pyridoxamine oxidase%2C PN/PM oxidase;Note=Similar to ATPPOX (A. THALIANA PYRIDOXIN (PYRODOXAMINE) 5'-PHOSPHATE OXIDASE)%3B pyridoxamine-phosphate oxidase.;Transcript_evidence=AK099380 (DDBJ%2C Best hit);ORF_evidence=NP_568717.2 (RefSeq);GO=Biological Process: pyridoxine biosynthetic process (GO:0008615),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: pyridoxamine-phosphate oxidase activity (GO:0004733),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-NH2 group of donors (GO:0016638);InterPro=Pyridoxamine 5'-phosphate oxidase (IPR000659),YjeF-related protein%2C N-terminal (IPR004443),FMN-binding split barrel-related (IPR009002),Pyridoxamine 5'-phosphate oxidase-like%2C FMN-binding domain (IPR011576),FMN-binding split barrel (IPR012349),Pyridoxine 5'-phosphate oxidase%2C dimerisation%2C C-terminal (IPR019576),Pyridoxamine 5'-phosphate oxidase%2C conserved site (IPR019740),Pyridoxamine 5'-phosphate oxidase%2C plant (IPR021198);NIAS_FLcDNA=J033070K02;Oryzabase=23100;TENOR=Os10t0377800-03
Chr10	irgsp1_rep	five_prime_UTR	12073561	12073561	.	-	.	Parent=Os10t0377800-03
Chr10	irgsp1_rep	CDS	12073279	12073560	.	-	0	Parent=Os10t0377800-03
Chr10	irgsp1_rep	CDS	12073153	12073191	.	-	0	Parent=Os10t0377800-03
Chr10	irgsp1_rep	CDS	12071772	12071939	.	-	0	Parent=Os10t0377800-03
Chr10	irgsp1_rep	CDS	12071580	12071685	.	-	0	Parent=Os10t0377800-03
Chr10	irgsp1_rep	CDS	12070724	12070887	.	-	2	Parent=Os10t0377800-03
Chr10	irgsp1_rep	CDS	12070364	12070606	.	-	0	Parent=Os10t0377800-03
Chr10	irgsp1_rep	CDS	12070175	12070263	.	-	0	Parent=Os10t0377800-03
Chr10	irgsp1_rep	CDS	12070028	12070078	.	-	1	Parent=Os10t0377800-03
Chr10	irgsp1_rep	CDS	12069846	12069936	.	-	1	Parent=Os10t0377800-03
Chr10	irgsp1_rep	CDS	12069357	12069461	.	-	0	Parent=Os10t0377800-03
Chr10	irgsp1_rep	CDS	12069155	12069225	.	-	0	Parent=Os10t0377800-03
Chr10	irgsp1_rep	CDS	12068389	12068484	.	-	1	Parent=Os10t0377800-03
Chr10	irgsp1_rep	CDS	12068237	12068303	.	-	1	Parent=Os10t0377800-03
Chr10	irgsp1_rep	three_prime_UTR	12067809	12068236	.	-	.	Parent=Os10t0377800-03
Chr10	irgsp1_rep	mRNA	12078203	12087495	.	-	.	ID=Os10t0378000-00;Name=Os10t0378000-00;Locus_id=Os10g0378000;Note=Similar to predicted protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q338Z0 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: monooxygenase activity (GO:0004497),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C B-class (IPR002397),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os10t0378000-00;KEGG=Os10t0378000-00
Chr10	irgsp1_rep	CDS	12086860	12087495	.	-	0	Parent=Os10t0378000-00
Chr10	irgsp1_rep	CDS	12086619	12086768	.	-	0	Parent=Os10t0378000-00
Chr10	irgsp1_rep	CDS	12086260	12086514	.	-	0	Parent=Os10t0378000-00
Chr10	irgsp1_rep	CDS	12080356	12080442	.	-	0	Parent=Os10t0378000-00
Chr10	irgsp1_rep	CDS	12080191	12080269	.	-	0	Parent=Os10t0378000-00
Chr10	irgsp1_rep	CDS	12079591	12079697	.	-	2	Parent=Os10t0378000-00
Chr10	irgsp1_rep	CDS	12078403	12078521	.	-	0	Parent=Os10t0378000-00
Chr10	irgsp1_rep	CDS	12078203	12078293	.	-	1	Parent=Os10t0378000-00
Chr10	irgsp1_rep	mRNA	12090264	12098560	.	-	.	ID=Os10t0378100-01;Name=Os10t0378100-01;Locus_id=Os10g0378100;Note=Similar to CytoChrome P450 family protein%2C expressed.;Transcript_evidence=AK120986 (DDBJ%2C Best hit);ORF_evidence=Q109R8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J023042H12;TENOR=Os10t0378100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	12098483	12098560	.	-	.	Parent=Os10t0378100-01
Chr10	irgsp1_rep	CDS	12097883	12098482	.	-	0	Parent=Os10t0378100-01
Chr10	irgsp1_rep	CDS	12096995	12097144	.	-	0	Parent=Os10t0378100-01
Chr10	irgsp1_rep	CDS	12096632	12096904	.	-	0	Parent=Os10t0378100-01
Chr10	irgsp1_rep	CDS	12093910	12093996	.	-	0	Parent=Os10t0378100-01
Chr10	irgsp1_rep	CDS	12093745	12093823	.	-	0	Parent=Os10t0378100-01
Chr10	irgsp1_rep	CDS	12093313	12093419	.	-	2	Parent=Os10t0378100-01
Chr10	irgsp1_rep	CDS	12090727	12090845	.	-	0	Parent=Os10t0378100-01
Chr10	irgsp1_rep	CDS	12090519	12090609	.	-	1	Parent=Os10t0378100-01
Chr10	irgsp1_rep	three_prime_UTR	12090264	12090518	.	-	.	Parent=Os10t0378100-01
Chr10	irgsp1_rep	mRNA	12107783	12112847	.	+	.	ID=Os10t0378300-01;Name=Os10t0378300-01;Locus_id=Os10g0378300;CGSNL Gene Symbol=CUTA1;CGSNL Gene Name=CU TOLERANCE A1;Oryzabase Gene Symbol Synonym(s)=OsCutA1;Oryzabase Gene Name Synonym(s)="Protein CutA 1%2C chloroplastic";Note=Similar to Truncated copper-binding protein CUTA.;Transcript_evidence=AK102858 (DDBJ%2C Best hit);ORF_evidence=Q109R6 (UniProt);GO=Biological Process: response to metal ion (GO:0010038);InterPro=Divalent ion tolerance protein%2C CutA (IPR004323),Nitrogen regulatory PII-like%2C alpha/beta (IPR011322);NIAS_FLcDNA=J033110P07;Oryzabase=7181;Expression=AK102858;TENOR=Os10t0378300-01;KEGG=Os10t0378300-01
Chr10	irgsp1_rep	five_prime_UTR	12107783	12107804	.	+	.	Parent=Os10t0378300-01
Chr10	irgsp1_rep	CDS	12107805	12107962	.	+	0	Parent=Os10t0378300-01
Chr10	irgsp1_rep	CDS	12108282	12108382	.	+	1	Parent=Os10t0378300-01
Chr10	irgsp1_rep	CDS	12109614	12109676	.	+	2	Parent=Os10t0378300-01
Chr10	irgsp1_rep	CDS	12112139	12112170	.	+	2	Parent=Os10t0378300-01
Chr10	irgsp1_rep	CDS	12112325	12112419	.	+	0	Parent=Os10t0378300-01
Chr10	irgsp1_rep	CDS	12112538	12112622	.	+	1	Parent=Os10t0378300-01
Chr10	irgsp1_rep	three_prime_UTR	12112623	12112847	.	+	.	Parent=Os10t0378300-01
Chr10	irgsp1_rep	mRNA	12107811	12113010	.	+	.	ID=Os10t0378300-02;Name=Os10t0378300-02;Locus_id=Os10g0378300;CGSNL Gene Symbol=CUTA1;CGSNL Gene Name=CU TOLERANCE A1;Oryzabase Gene Symbol Synonym(s)=OsCutA1;Oryzabase Gene Name Synonym(s)="Protein CutA 1%2C chloroplastic";Note=Similar to Protein CutA 1%2C chloroplastic.;Transcript_evidence=AK059907 (DDBJ%2C Best hit);ORF_evidence=Q109R6 (UniProt);GO=Biological Process: response to metal ion (GO:0010038);InterPro=Divalent ion tolerance protein%2C CutA (IPR004323),Nitrogen regulatory PII-like%2C alpha/beta (IPR011322);NIAS_FLcDNA=006-208-H09;Oryzabase=7181;TENOR=Os10t0378300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	12107811	12107962	.	+	.	Parent=Os10t0378300-02
Chr10	irgsp1_rep	five_prime_UTR	12108282	12108315	.	+	.	Parent=Os10t0378300-02
Chr10	irgsp1_rep	CDS	12108316	12108382	.	+	0	Parent=Os10t0378300-02
Chr10	irgsp1_rep	CDS	12109614	12109676	.	+	2	Parent=Os10t0378300-02
Chr10	irgsp1_rep	CDS	12112139	12112170	.	+	2	Parent=Os10t0378300-02
Chr10	irgsp1_rep	CDS	12112325	12112419	.	+	0	Parent=Os10t0378300-02
Chr10	irgsp1_rep	CDS	12112538	12112622	.	+	1	Parent=Os10t0378300-02
Chr10	irgsp1_rep	three_prime_UTR	12112623	12113010	.	+	.	Parent=Os10t0378300-02
Chr10	irgsp1_rep	mRNA	12113672	12116366	.	-	.	ID=Os10t0378400-01;Name=Os10t0378400-01;Locus_id=Os10g0378400;Oryzabase Gene Symbol Synonym(s)=GIL1;Note=Protein of unknown function DUF641%2C plant domain containing protein.;Transcript_evidence=AK059720 (DDBJ%2C Best hit);ORF_evidence=Q338Y6 (UniProt);InterPro=Domain of unknown function DUF641%2C plant (IPR006943);NIAS_FLcDNA=001-032-H03;Oryzabase=12407;Expression=AK059720;TENOR=Os10t0378400-01;KEGG=Os10t0378400-01
Chr10	irgsp1_rep	five_prime_UTR	12116070	12116366	.	-	.	Parent=Os10t0378400-01
Chr10	irgsp1_rep	five_prime_UTR	12115206	12115269	.	-	.	Parent=Os10t0378400-01
Chr10	irgsp1_rep	CDS	12115113	12115205	.	-	0	Parent=Os10t0378400-01
Chr10	irgsp1_rep	CDS	12113937	12114860	.	-	0	Parent=Os10t0378400-01
Chr10	irgsp1_rep	three_prime_UTR	12113672	12113936	.	-	.	Parent=Os10t0378400-01
Chr10	irgsp1_rep	mRNA	12119384	12120231	.	-	.	ID=Os10t0378450-00;Name=Os10t0378450-00;Locus_id=Os10g0378450;Note=Similar to AT hook-containing MAR binding 1-like protein.;Transcript_evidence=EU969400 (DDBJ);ORF_evidence=NP_001151073.1 (RefSeq);TENOR=Os10t0378450-00;KEGG=Os10t0378450-00
Chr10	irgsp1_rep	five_prime_UTR	12120226	12120231	.	-	.	Parent=Os10t0378450-00
Chr10	irgsp1_rep	CDS	12119638	12120225	.	-	0	Parent=Os10t0378450-00
Chr10	irgsp1_rep	three_prime_UTR	12119384	12119637	.	-	.	Parent=Os10t0378450-00
Chr10	irgsp1_rep	mRNA	12181085	12183127	.	-	.	ID=Os10t0379100-01;Name=Os10t0379100-01;Locus_id=Os10g0379100;CGSNL Gene Symbol=THT1;CGSNL Gene Name=TRYPTAMINE HYDROXYCINNAMOYL TRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=Os-THT1%2C OsTHT1;Oryzabase Gene Name Synonym(s)=Tryptamine hydroxycinnamoyl transferase 1;Note=Transferase family protein.;Transcript_evidence=AK287765 (DDBJ%2C Best hit);ORF_evidence=NP_001064484.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J065163O10;Oryzabase=21362;TENOR=Os10t0379100-01;KEGG=Os10t0379100-01
Chr10	irgsp1_rep	five_prime_UTR	12183046	12183127	.	-	.	Parent=Os10t0379100-01
Chr10	irgsp1_rep	CDS	12182665	12183045	.	-	0	Parent=Os10t0379100-01
Chr10	irgsp1_rep	CDS	12181339	12182268	.	-	0	Parent=Os10t0379100-01
Chr10	irgsp1_rep	three_prime_UTR	12181085	12181338	.	-	.	Parent=Os10t0379100-01
Chr10	irgsp1_rep	mRNA	12181406	12183056	.	+	.	ID=Os10t0379233-00;Name=Os10t0379233-00;Locus_id=Os10g0379233;Note=Hypothetical protein.;Transcript_evidence=tplb0014h21 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0379233-00
Chr10	irgsp1_rep	five_prime_UTR	12181406	12181407	.	+	.	Parent=Os10t0379233-00
Chr10	irgsp1_rep	CDS	12181408	12182256	.	+	0	Parent=Os10t0379233-00
Chr10	irgsp1_rep	CDS	12182651	12182683	.	+	0	Parent=Os10t0379233-00
Chr10	irgsp1_rep	three_prime_UTR	12182684	12183056	.	+	.	Parent=Os10t0379233-00
Chr10	irgsp1_rep	mRNA	12215018	12216339	.	-	.	ID=Os10t0379854-00;Name=Os10t0379854-00;Locus_id=Os10g0379854;Note=Hypothetical protein.;Transcript_evidence=tplb0014h21 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0379854-00
Chr10	irgsp1_rep	five_prime_UTR	12215587	12216339	.	-	.	Parent=Os10t0379854-00
Chr10	irgsp1_rep	CDS	12215456	12215586	.	-	0	Parent=Os10t0379854-00
Chr10	irgsp1_rep	CDS	12215018	12215347	.	-	1	Parent=Os10t0379854-00
Chr10	irgsp1_rep	mRNA	12215500	12216409	.	+	.	ID=Os10t0380100-01;Name=Os10t0380100-01;Locus_id=Os10g0380100;CGSNL Gene Symbol=THT2;CGSNL Gene Name=TRYPTAMINE HYDROXYCINNAMOYL TRANSFERASE 2;Oryzabase Gene Symbol Synonym(s)=Os-THT2%2C OsTHT2;Oryzabase Gene Name Synonym(s)=Tryptamine hydroxycinnamoyl transferase 2;Note=Transferase family protein.;Transcript_evidence=AK066965 (DDBJ%2C Best hit);ORF_evidence=Q8LMI4 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J013092H19;Oryzabase=21363;Expression=AK066965;TENOR=Os10t0380100-01;KEGG=Os10t0380100-01
Chr10	irgsp1_rep	five_prime_UTR	12215500	12215500	.	+	.	Parent=Os10t0380100-01
Chr10	irgsp1_rep	CDS	12215501	12216406	.	+	0	Parent=Os10t0380100-01
Chr10	irgsp1_rep	three_prime_UTR	12216407	12216409	.	+	.	Parent=Os10t0380100-01
Chr10	irgsp1_rep	mRNA	12260670	12262330	.	-	.	ID=Os10t0380800-00;Name=Os10t0380800-00;Locus_id=Os10g0380800;Oryzabase Gene Name Synonym(s)=Decarboxylase;Note=Similar to Tryptophan decarboxylase.;Transcript_evidence=AK363410 (DDBJ);ORF_evidence=Q6BD07 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: carboxylic acid metabolic process (GO:0019752),Molecular Function: catalytic activity (GO:0003824),Molecular Function: carboxy-lyase activity (GO:0016831),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent decarboxylase (IPR002129),Aromatic-L-amino-acid decarboxylase (IPR010977),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);Oryzabase=18254;TENOR=Os10t0380800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	12262251	12262330	.	-	.	Parent=Os10t0380800-00
Chr10	irgsp1_rep	CDS	12260670	12262250	.	-	0	Parent=Os10t0380800-00
Chr10	irgsp1_rep	mRNA	12225715	12226361	.	-	.	ID=Os10t0381200-00;Name=Os10t0381200-00;Locus_id=Os10g0381200;Note=Conserved hypothetical protein.;Transcript_evidence=AK335198 (DDBJ);ORF_evidence=B9G5H0 (UniProt);TENOR=Os10t0381200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	12226024	12226361	.	-	.	Parent=Os10t0381200-00
Chr10	irgsp1_rep	CDS	12225715	12226023	.	-	0	Parent=Os10t0381200-00
Chr10	irgsp1_rep	mRNA	12302907	12303711	.	-	.	ID=Os10t0381601-01;Name=Os10t0381601-01;Locus_id=Os10g0381601;Note=Conserved hypothetical protein.;Transcript_evidence=AK241865 (DDBJ%2C Best hit);ORF_evidence=NP_001176213.1 (RefSeq);NIAS_FLcDNA=J065217H16;Oryzabase=20004;TENOR=Os10t0381601-01;KEGG=Os10t0381601-01
Chr10	irgsp1_rep	five_prime_UTR	12303436	12303711	.	-	.	Parent=Os10t0381601-01
Chr10	irgsp1_rep	CDS	12303094	12303435	.	-	0	Parent=Os10t0381601-01
Chr10	irgsp1_rep	three_prime_UTR	12302907	12303093	.	-	.	Parent=Os10t0381601-01
Chr10	irgsp1_rep	mRNA	12307134	12309451	.	+	.	ID=Os10t0381700-01;Name=Os10t0381700-01;Locus_id=Os10g0381700;Oryzabase Gene Symbol Synonym(s)=OsFbox548%2C Os_F0160;Oryzabase Gene Name Synonym(s)=F-box protein 548;Note=Hypothetical gene.;Transcript_evidence=AK288824 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090073H14;Oryzabase=17317;TENOR=Os10t0381700-01;KEGG=Os10t0381700-01
Chr10	irgsp1_rep	five_prime_UTR	12307134	12307409	.	+	.	Parent=Os10t0381700-01
Chr10	irgsp1_rep	CDS	12307410	12307622	.	+	0	Parent=Os10t0381700-01
Chr10	irgsp1_rep	three_prime_UTR	12307623	12309451	.	+	.	Parent=Os10t0381700-01
Chr10	irgsp1_rep	mRNA	12308004	12311609	.	-	.	ID=Os10t0381800-01;Name=Os10t0381800-01;Locus_id=Os10g0381800;Note=Conserved hypothetical protein.;Transcript_evidence=AK100608 (DDBJ%2C Best hit);ORF_evidence=B9G5H4 (UniProt);NIAS_FLcDNA=J023107K23;TENOR=Os10t0381800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	12311507	12311609	.	-	.	Parent=Os10t0381800-01
Chr10	irgsp1_rep	CDS	12311180	12311506	.	-	0	Parent=Os10t0381800-01
Chr10	irgsp1_rep	three_prime_UTR	12310332	12311179	.	-	.	Parent=Os10t0381800-01
Chr10	irgsp1_rep	three_prime_UTR	12309829	12310214	.	-	.	Parent=Os10t0381800-01
Chr10	irgsp1_rep	three_prime_UTR	12309267	12309724	.	-	.	Parent=Os10t0381800-01
Chr10	irgsp1_rep	three_prime_UTR	12308924	12309188	.	-	.	Parent=Os10t0381800-01
Chr10	irgsp1_rep	three_prime_UTR	12308004	12308823	.	-	.	Parent=Os10t0381800-01
Chr10	irgsp1_rep	mRNA	12307928	12310197	.	-	.	ID=Os10t0381800-02;Name=Os10t0381800-02;Locus_id=Os10g0381800;Note=Zinc finger%2C SWIM-type domain containing protein.;Transcript_evidence=AK060203 (DDBJ%2C Best hit);ORF_evidence=B9G5H4 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);NIAS_FLcDNA=001-001-H01;TENOR=Os10t0381800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	12310196	12310197	.	-	.	Parent=Os10t0381800-02
Chr10	irgsp1_rep	CDS	12309829	12310195	.	-	0	Parent=Os10t0381800-02
Chr10	irgsp1_rep	CDS	12309267	12309724	.	-	2	Parent=Os10t0381800-02
Chr10	irgsp1_rep	CDS	12308924	12309188	.	-	0	Parent=Os10t0381800-02
Chr10	irgsp1_rep	CDS	12308747	12308823	.	-	2	Parent=Os10t0381800-02
Chr10	irgsp1_rep	three_prime_UTR	12307928	12308746	.	-	.	Parent=Os10t0381800-02
Chr10	irgsp1_rep	mRNA	12321053	12321838	.	+	.	ID=Os10t0382100-01;Name=Os10t0382100-01;Locus_id=Os10g0382100;Note=Ribosome-inactivating protein domain containing protein.;Transcript_evidence=AK242378 (DDBJ%2C Best hit);ORF_evidence=NP_001176132.1 (RefSeq);GO=Biological Process: negative regulation of translation (GO:0017148),Molecular Function: rRNA N-glycosylase activity (GO:0030598);InterPro=Ribosome-inactivating protein (IPR001574),Ribosome-inactivating protein%2C subdomain 1 (IPR016138);NIAS_FLcDNA=J080040K01;TENOR=Os10t0382100-01;KEGG=Os10t0382100-01
Chr10	irgsp1_rep	five_prime_UTR	12321053	12321054	.	+	.	Parent=Os10t0382100-01
Chr10	irgsp1_rep	CDS	12321055	12321705	.	+	0	Parent=Os10t0382100-01
Chr10	irgsp1_rep	three_prime_UTR	12321706	12321838	.	+	.	Parent=Os10t0382100-01
Chr10	irgsp1_rep	mRNA	12327444	12336588	.	+	.	ID=Os10t0382300-01;Name=Os10t0382300-01;Locus_id=Os10g0382300;Note=Similar to Signal peptide containing large protein with proline stretches.;Transcript_evidence=AK069060 (DDBJ%2C Best hit);ORF_evidence=B9G5H7 (UniProt);InterPro=CTLH%2C C-terminal LisH motif (IPR006595);NIAS_FLcDNA=J023005G23;Expression=AK069060;TENOR=Os10t0382300-01;KEGG=Os10t0382300-01
Chr10	irgsp1_rep	five_prime_UTR	12327444	12327482	.	+	.	Parent=Os10t0382300-01
Chr10	irgsp1_rep	CDS	12327483	12327842	.	+	0	Parent=Os10t0382300-01
Chr10	irgsp1_rep	CDS	12327919	12328020	.	+	0	Parent=Os10t0382300-01
Chr10	irgsp1_rep	CDS	12330939	12331019	.	+	0	Parent=Os10t0382300-01
Chr10	irgsp1_rep	CDS	12331439	12331548	.	+	0	Parent=Os10t0382300-01
Chr10	irgsp1_rep	CDS	12331643	12331776	.	+	1	Parent=Os10t0382300-01
Chr10	irgsp1_rep	CDS	12331846	12331946	.	+	2	Parent=Os10t0382300-01
Chr10	irgsp1_rep	CDS	12333618	12333723	.	+	0	Parent=Os10t0382300-01
Chr10	irgsp1_rep	CDS	12333858	12334174	.	+	2	Parent=Os10t0382300-01
Chr10	irgsp1_rep	CDS	12334263	12334445	.	+	0	Parent=Os10t0382300-01
Chr10	irgsp1_rep	CDS	12334573	12334770	.	+	0	Parent=Os10t0382300-01
Chr10	irgsp1_rep	CDS	12335626	12335943	.	+	0	Parent=Os10t0382300-01
Chr10	irgsp1_rep	CDS	12336318	12336410	.	+	0	Parent=Os10t0382300-01
Chr10	irgsp1_rep	three_prime_UTR	12336411	12336588	.	+	.	Parent=Os10t0382300-01
Chr10	irgsp1_rep	mRNA	12327472	12336589	.	+	.	ID=Os10t0382300-02;Name=Os10t0382300-02;Locus_id=Os10g0382300;Note=Similar to Signal peptide containing large protein with proline stretches.;Transcript_evidence=AK104976 (DDBJ%2C Best hit);ORF_evidence=B9G5H7 (UniProt);InterPro=CTLH%2C C-terminal LisH motif (IPR006595);NIAS_FLcDNA=001-123-H07;Expression=AK104976;TENOR=Os10t0382300-02;KEGG=Os10t0382300-02
Chr10	irgsp1_rep	five_prime_UTR	12327472	12327482	.	+	.	Parent=Os10t0382300-02
Chr10	irgsp1_rep	CDS	12327483	12327842	.	+	0	Parent=Os10t0382300-02
Chr10	irgsp1_rep	CDS	12327919	12328020	.	+	0	Parent=Os10t0382300-02
Chr10	irgsp1_rep	CDS	12330939	12331019	.	+	0	Parent=Os10t0382300-02
Chr10	irgsp1_rep	CDS	12331439	12331548	.	+	0	Parent=Os10t0382300-02
Chr10	irgsp1_rep	CDS	12331643	12331776	.	+	1	Parent=Os10t0382300-02
Chr10	irgsp1_rep	CDS	12331846	12331946	.	+	2	Parent=Os10t0382300-02
Chr10	irgsp1_rep	CDS	12333618	12333723	.	+	0	Parent=Os10t0382300-02
Chr10	irgsp1_rep	CDS	12333858	12334174	.	+	2	Parent=Os10t0382300-02
Chr10	irgsp1_rep	CDS	12334263	12334445	.	+	0	Parent=Os10t0382300-02
Chr10	irgsp1_rep	CDS	12334573	12334770	.	+	0	Parent=Os10t0382300-02
Chr10	irgsp1_rep	CDS	12335626	12335943	.	+	0	Parent=Os10t0382300-02
Chr10	irgsp1_rep	CDS	12336318	12336410	.	+	0	Parent=Os10t0382300-02
Chr10	irgsp1_rep	three_prime_UTR	12336411	12336589	.	+	.	Parent=Os10t0382300-02
Chr10	irgsp1_rep	mRNA	12340872	12345957	.	-	.	ID=Os10t0382400-01;Name=Os10t0382400-01;Locus_id=Os10g0382400;Note=Conserved hypothetical protein.;Transcript_evidence=AK064476 (DDBJ%2C Best hit);ORF_evidence=Q8S6L2 (UniProt);NIAS_FLcDNA=002-111-A01;Expression=AK064476;TENOR=Os10t0382400-01;KEGG=Os10t0382400-01
Chr10	irgsp1_rep	five_prime_UTR	12345146	12345957	.	-	.	Parent=Os10t0382400-01
Chr10	irgsp1_rep	CDS	12345023	12345145	.	-	0	Parent=Os10t0382400-01
Chr10	irgsp1_rep	three_prime_UTR	12345017	12345022	.	-	.	Parent=Os10t0382400-01
Chr10	irgsp1_rep	three_prime_UTR	12344014	12344080	.	-	.	Parent=Os10t0382400-01
Chr10	irgsp1_rep	three_prime_UTR	12343847	12343883	.	-	.	Parent=Os10t0382400-01
Chr10	irgsp1_rep	three_prime_UTR	12343632	12343726	.	-	.	Parent=Os10t0382400-01
Chr10	irgsp1_rep	three_prime_UTR	12341938	12341993	.	-	.	Parent=Os10t0382400-01
Chr10	irgsp1_rep	three_prime_UTR	12340872	12341214	.	-	.	Parent=Os10t0382400-01
Chr10	irgsp1_rep	mRNA	12348924	12350821	.	-	.	ID=Os10t0382600-01;Name=Os10t0382600-01;Locus_id=Os10g0382600;Note=Conserved hypothetical protein.;Transcript_evidence=AK106391 (DDBJ%2C Best hit);ORF_evidence=B9G5H8 (UniProt);NIAS_FLcDNA=002-102-E12;TENOR=Os10t0382600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	12350821	12350821	.	-	.	Parent=Os10t0382600-01
Chr10	irgsp1_rep	CDS	12350146	12350820	.	-	0	Parent=Os10t0382600-01
Chr10	irgsp1_rep	CDS	12349990	12350013	.	-	0	Parent=Os10t0382600-01
Chr10	irgsp1_rep	three_prime_UTR	12349946	12349989	.	-	.	Parent=Os10t0382600-01
Chr10	irgsp1_rep	three_prime_UTR	12348924	12349560	.	-	.	Parent=Os10t0382600-01
Chr10	irgsp1_rep	mRNA	12480539	12506202	.	-	.	ID=Os10t0384600-01;Name=Os10t0384600-01;Locus_id=Os10g0384600;Oryzabase Gene Symbol Synonym(s)=Os_F0664;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK071078 (DDBJ%2C Best hit);ORF_evidence=B9G5I0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810);NIAS_FLcDNA=J023078G03;Oryzabase=17550;Expression=AK071078;TENOR=Os10t0384600-01;KEGG=Os10t0384600-01
Chr10	irgsp1_rep	five_prime_UTR	12506169	12506202	.	-	.	Parent=Os10t0384600-01
Chr10	irgsp1_rep	CDS	12506096	12506168	.	-	0	Parent=Os10t0384600-01
Chr10	irgsp1_rep	CDS	12505579	12505652	.	-	2	Parent=Os10t0384600-01
Chr10	irgsp1_rep	CDS	12481832	12482773	.	-	0	Parent=Os10t0384600-01
Chr10	irgsp1_rep	CDS	12481561	12481716	.	-	0	Parent=Os10t0384600-01
Chr10	irgsp1_rep	CDS	12480723	12481139	.	-	0	Parent=Os10t0384600-01
Chr10	irgsp1_rep	three_prime_UTR	12480539	12480722	.	-	.	Parent=Os10t0384600-01
Chr10	irgsp1_rep	mRNA	12689425	12690416	.	-	.	ID=Os10t0386300-01;Name=Os10t0386300-01;Locus_id=Os10g0386300;Oryzabase Gene Name Synonym(s)=Hypothetical protein;Note=Hypothetical protein.;Transcript_evidence=AK064449 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-110-F04;Oryzabase=23376;Expression=AK064449;TENOR=Os10t0386300-01;KEGG=Os10t0386300-01
Chr10	irgsp1_rep	five_prime_UTR	12690328	12690416	.	-	.	Parent=Os10t0386300-01
Chr10	irgsp1_rep	CDS	12689608	12690327	.	-	0	Parent=Os10t0386300-01
Chr10	irgsp1_rep	three_prime_UTR	12689425	12689607	.	-	.	Parent=Os10t0386300-01
Chr10	irgsp1_rep	mRNA	12729820	12744575	.	-	.	ID=Os10t0386601-00;Name=Os10t0386601-00;Locus_id=Os10g0386601;Note=Non-protein coding transcript.;Transcript_evidence=tplb0007f05 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os10t0386601-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	exon	12744491	12744575	.	-	.	Parent=Os10t0386601-00
Chr10	irgsp1_rep	exon	12743996	12744099	.	-	.	Parent=Os10t0386601-00
Chr10	irgsp1_rep	exon	12743770	12743910	.	-	.	Parent=Os10t0386601-00
Chr10	irgsp1_rep	exon	12743571	12743694	.	-	.	Parent=Os10t0386601-00
Chr10	irgsp1_rep	exon	12741682	12741800	.	-	.	Parent=Os10t0386601-00
Chr10	irgsp1_rep	exon	12741250	12741537	.	-	.	Parent=Os10t0386601-00
Chr10	irgsp1_rep	exon	12741127	12741195	.	-	.	Parent=Os10t0386601-00
Chr10	irgsp1_rep	exon	12729820	12729921	.	-	.	Parent=Os10t0386601-00
Chr10	irgsp1_rep	mRNA	12755432	12759572	.	-	.	ID=Os10t0387000-01;Name=Os10t0387000-01;Locus_id=Os10g0387000;Note=Similar to Choline phosphate cytidylyltransferase-like protein (Fragment).;Transcript_evidence=AK099943 (DDBJ%2C Best hit);ORF_evidence=A3C4A6 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=Cytidylyltransferase (IPR004820),Cytidyltransferase-related (IPR004821),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J013121N21;Expression=AK099943;TENOR=Os10t0387000-01;KEGG=Os10t0387000-01 (EC:2.7.7.15)
Chr10	irgsp1_rep	five_prime_UTR	12759447	12759572	.	-	.	Parent=Os10t0387000-01
Chr10	irgsp1_rep	five_prime_UTR	12758611	12758643	.	-	.	Parent=Os10t0387000-01
Chr10	irgsp1_rep	CDS	12758240	12758610	.	-	0	Parent=Os10t0387000-01
Chr10	irgsp1_rep	CDS	12757561	12757796	.	-	1	Parent=Os10t0387000-01
Chr10	irgsp1_rep	CDS	12757274	12757431	.	-	2	Parent=Os10t0387000-01
Chr10	irgsp1_rep	CDS	12756904	12756975	.	-	0	Parent=Os10t0387000-01
Chr10	irgsp1_rep	CDS	12756730	12756797	.	-	0	Parent=Os10t0387000-01
Chr10	irgsp1_rep	CDS	12756489	12756606	.	-	1	Parent=Os10t0387000-01
Chr10	irgsp1_rep	CDS	12756296	12756355	.	-	0	Parent=Os10t0387000-01
Chr10	irgsp1_rep	CDS	12756081	12756203	.	-	0	Parent=Os10t0387000-01
Chr10	irgsp1_rep	CDS	12755893	12755964	.	-	0	Parent=Os10t0387000-01
Chr10	irgsp1_rep	three_prime_UTR	12755432	12755892	.	-	.	Parent=Os10t0387000-01
Chr10	irgsp1_rep	mRNA	12756426	12758403	.	+	.	ID=Os10t0387050-00;Name=Os10t0387050-00;Locus_id=Os10g0387050;Note=Non-protein coding transcript.;Transcript_evidence=tplb0056c04 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os10t0387050-00
Chr10	irgsp1_rep	exon	12756426	12756725	.	+	.	Parent=Os10t0387050-00
Chr10	irgsp1_rep	exon	12757241	12757349	.	+	.	Parent=Os10t0387050-00
Chr10	irgsp1_rep	exon	12757466	12757788	.	+	.	Parent=Os10t0387050-00
Chr10	irgsp1_rep	exon	12758237	12758403	.	+	.	Parent=Os10t0387050-00
Chr10	irgsp1_rep	mRNA	12784279	12784930	.	-	.	ID=Os10t0387201-00;Name=Os10t0387201-00;Locus_id=Os10g0387201;Note=Hypothetical protein.;Transcript_evidence=EU971977 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0387201-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	12784680	12784930	.	-	.	Parent=Os10t0387201-00
Chr10	irgsp1_rep	CDS	12784419	12784679	.	-	0	Parent=Os10t0387201-00
Chr10	irgsp1_rep	CDS	12784334	12784363	.	-	0	Parent=Os10t0387201-00
Chr10	irgsp1_rep	three_prime_UTR	12784279	12784333	.	-	.	Parent=Os10t0387201-00
Chr10	irgsp1_rep	mRNA	12807152	12812141	.	+	.	ID=Os10t0388100-01;Name=Os10t0388100-01;Locus_id=Os10g0388100;Note=Conserved hypothetical protein.;Transcript_evidence=AK288795 (DDBJ%2C Best hit);ORF_evidence=Q8LIS0 (UniProt);NIAS_FLcDNA=J090070D09;TENOR=Os10t0388100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	12807152	12809958	.	+	.	Parent=Os10t0388100-01
Chr10	irgsp1_rep	CDS	12809959	12810108	.	+	0	Parent=Os10t0388100-01
Chr10	irgsp1_rep	three_prime_UTR	12810109	12812141	.	+	.	Parent=Os10t0388100-01
Chr10	irgsp1_rep	mRNA	12815755	12818849	.	-	.	ID=Os10t0388200-01;Name=Os10t0388200-01;Locus_id=Os10g0388200;Oryzabase Gene Symbol Synonym(s)=OsFbox549%2C Os_F0255;Oryzabase Gene Name Synonym(s)=F-box protein 549;Note=Kelch-type beta propeller domain containing protein.;Transcript_evidence=AK065918 (DDBJ%2C Best hit);ORF_evidence=B6T7I5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Kelch repeat type 1 (IPR006652),Galactose oxidase%2C beta-propeller (IPR015916),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013049C12;Oryzabase=17318;Expression=AK065918;TENOR=Os10t0388200-01;KEGG=Os10t0388200-01
Chr10	irgsp1_rep	five_prime_UTR	12818676	12818849	.	-	.	Parent=Os10t0388200-01
Chr10	irgsp1_rep	five_prime_UTR	12817112	12817165	.	-	.	Parent=Os10t0388200-01
Chr10	irgsp1_rep	CDS	12816068	12817111	.	-	0	Parent=Os10t0388200-01
Chr10	irgsp1_rep	three_prime_UTR	12815755	12816067	.	-	.	Parent=Os10t0388200-01
Chr10	irgsp1_rep	mRNA	12834324	12843741	.	+	.	ID=Os10t0388500-01;Name=Os10t0388500-01;Locus_id=Os10g0388500;Note=Conserved hypothetical protein.;Transcript_evidence=AK120894 (DDBJ%2C Best hit);ORF_evidence=Q338Q5 (UniProt);NIAS_FLcDNA=J023029O16;TENOR=Os10t0388500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	12834324	12834821	.	+	.	Parent=Os10t0388500-01
Chr10	irgsp1_rep	five_prime_UTR	12835212	12835252	.	+	.	Parent=Os10t0388500-01
Chr10	irgsp1_rep	CDS	12835253	12835293	.	+	0	Parent=Os10t0388500-01
Chr10	irgsp1_rep	CDS	12835712	12835911	.	+	1	Parent=Os10t0388500-01
Chr10	irgsp1_rep	CDS	12836001	12836129	.	+	2	Parent=Os10t0388500-01
Chr10	irgsp1_rep	CDS	12836216	12836353	.	+	2	Parent=Os10t0388500-01
Chr10	irgsp1_rep	CDS	12836428	12836487	.	+	2	Parent=Os10t0388500-01
Chr10	irgsp1_rep	CDS	12836575	12836760	.	+	2	Parent=Os10t0388500-01
Chr10	irgsp1_rep	CDS	12836844	12836993	.	+	2	Parent=Os10t0388500-01
Chr10	irgsp1_rep	CDS	12837092	12837241	.	+	2	Parent=Os10t0388500-01
Chr10	irgsp1_rep	CDS	12843279	12843283	.	+	2	Parent=Os10t0388500-01
Chr10	irgsp1_rep	three_prime_UTR	12843284	12843741	.	+	.	Parent=Os10t0388500-01
Chr10	irgsp1_rep	mRNA	12849592	12854148	.	+	.	ID=Os10t0388600-00;Name=Os10t0388600-00;Locus_id=Os10g0388600;Note=Hypothetical conserved gene.;Transcript_evidence=CT835766 (DDBJ%2C Best hit);ORF_evidence=Q109R5 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase C48%2C SUMO/Sentrin/Ubl1 (IPR003653);TENOR=Os10t0388600-00;KEGG=Os10t0388600-00
Chr10	irgsp1_rep	five_prime_UTR	12849592	12850005	.	+	.	Parent=Os10t0388600-00
Chr10	irgsp1_rep	CDS	12850006	12850239	.	+	0	Parent=Os10t0388600-00
Chr10	irgsp1_rep	CDS	12850914	12851085	.	+	0	Parent=Os10t0388600-00
Chr10	irgsp1_rep	CDS	12851354	12851502	.	+	2	Parent=Os10t0388600-00
Chr10	irgsp1_rep	CDS	12851592	12851765	.	+	0	Parent=Os10t0388600-00
Chr10	irgsp1_rep	CDS	12851873	12851998	.	+	0	Parent=Os10t0388600-00
Chr10	irgsp1_rep	CDS	12852090	12852220	.	+	0	Parent=Os10t0388600-00
Chr10	irgsp1_rep	CDS	12852340	12852415	.	+	1	Parent=Os10t0388600-00
Chr10	irgsp1_rep	CDS	12852495	12852790	.	+	0	Parent=Os10t0388600-00
Chr10	irgsp1_rep	CDS	12852864	12853062	.	+	1	Parent=Os10t0388600-00
Chr10	irgsp1_rep	CDS	12853188	12853295	.	+	0	Parent=Os10t0388600-00
Chr10	irgsp1_rep	CDS	12853366	12853622	.	+	0	Parent=Os10t0388600-00
Chr10	irgsp1_rep	CDS	12853706	12853781	.	+	1	Parent=Os10t0388600-00
Chr10	irgsp1_rep	CDS	12853864	12853989	.	+	0	Parent=Os10t0388600-00
Chr10	irgsp1_rep	three_prime_UTR	12853990	12854148	.	+	.	Parent=Os10t0388600-00
Chr10	irgsp1_rep	mRNA	12855670	12856069	.	+	.	ID=Os10t0388701-01;Name=Os10t0388701-01;Locus_id=Os10g0388701;Note=Non-protein coding transcript.;Transcript_evidence=AK242485 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080306C08;TENOR=Os10t0388701-01
Chr10	irgsp1_rep	exon	12855670	12856069	.	+	.	Parent=Os10t0388701-01
Chr10	irgsp1_rep	mRNA	12867952	12869919	.	-	.	ID=Os10t0388900-01;Name=Os10t0388900-01;Locus_id=Os10g0388900;Note=Conserved hypothetical protein.;Transcript_evidence=AK101651 (DDBJ%2C Best hit);ORF_evidence=B8BGL5 (UniProt);NIAS_FLcDNA=J033057B06;Expression=AK101651;TENOR=Os10t0388900-01;KEGG=Os10t0388900-01
Chr10	irgsp1_rep	five_prime_UTR	12869907	12869919	.	-	.	Parent=Os10t0388900-01
Chr10	irgsp1_rep	CDS	12869827	12869906	.	-	0	Parent=Os10t0388900-01
Chr10	irgsp1_rep	CDS	12869667	12869715	.	-	1	Parent=Os10t0388900-01
Chr10	irgsp1_rep	CDS	12869397	12869537	.	-	0	Parent=Os10t0388900-01
Chr10	irgsp1_rep	CDS	12868707	12868946	.	-	0	Parent=Os10t0388900-01
Chr10	irgsp1_rep	CDS	12868545	12868584	.	-	0	Parent=Os10t0388900-01
Chr10	irgsp1_rep	CDS	12868367	12868464	.	-	2	Parent=Os10t0388900-01
Chr10	irgsp1_rep	CDS	12868265	12868282	.	-	0	Parent=Os10t0388900-01
Chr10	irgsp1_rep	three_prime_UTR	12867952	12868264	.	-	.	Parent=Os10t0388900-01
Chr10	irgsp1_rep	mRNA	12870906	12874037	.	-	.	ID=Os10t0389000-01;Name=Os10t0389000-01;Locus_id=Os10g0389000;CGSNL Gene Symbol=CML8;CGSNL Gene Name=CALMODULIN-LIKE PROTEIN 8;Oryzabase Gene Symbol Synonym(s)=OsCML8;Oryzabase Gene Name Synonym(s)=calmodulin-like protein 8;Note=Centrin.;Transcript_evidence=AK065782 (DDBJ%2C Best hit);ORF_evidence=NP_001149887.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),Flagellar calcium-binding protein calflagin (IPR003299),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J013039I19;Oryzabase=10520;Expression=AK065782;TENOR=Os10t0389000-01;KEGG=Os10t0389000-01
Chr10	irgsp1_rep	five_prime_UTR	12873810	12874037	.	-	.	Parent=Os10t0389000-01
Chr10	irgsp1_rep	CDS	12873807	12873809	.	-	0	Parent=Os10t0389000-01
Chr10	irgsp1_rep	CDS	12873160	12873337	.	-	0	Parent=Os10t0389000-01
Chr10	irgsp1_rep	CDS	12873011	12873047	.	-	2	Parent=Os10t0389000-01
Chr10	irgsp1_rep	CDS	12872702	12872729	.	-	1	Parent=Os10t0389000-01
Chr10	irgsp1_rep	CDS	12872378	12872530	.	-	0	Parent=Os10t0389000-01
Chr10	irgsp1_rep	CDS	12872160	12872262	.	-	0	Parent=Os10t0389000-01
Chr10	irgsp1_rep	CDS	12871163	12871236	.	-	2	Parent=Os10t0389000-01
Chr10	irgsp1_rep	three_prime_UTR	12870906	12871162	.	-	.	Parent=Os10t0389000-01
Chr10	irgsp1_rep	mRNA	12879408	12880295	.	-	.	ID=Os10t0389100-01;Name=Os10t0389100-01;Locus_id=Os10g0389100;RAP-DB Gene Symbol Synonym(s)=OsRCCR3%2C RCCR3;RAP-DB Gene Name Synonym(s)=RED CHLOROPHYLL CATABOLITE REDUCTASE 3%2C red chlorophyll catabolite reductase 3;CGSNL Gene Symbol=RCCR3;CGSNL Gene Name=RED CHLOROPHYLL CATABOLITE REDUCTASE 3;Oryzabase Gene Symbol Synonym(s)=OsRCCR3;Oryzabase Gene Name Synonym(s)=red chlorophyll catabolite reductase 3;Note=Red chlorophyll catabolite reductase%2C Truncated copy of OsRCCR1;Transcript_evidence=Inferred from literature;ORF_evidence=Q338P7;GO=Molecular Function: red chlorophyll catabolite reductase activity (GO:0051743);InterPro=Red chlorophyll catabolite reductase (IPR009439);Manual Curation=May 29%2C 2017;Literature_PMID=21807436;Oryzabase=14757;TENOR=Os10t0389100-00
Chr10	irgsp1_rep	CDS	12880206	12880295	.	-	0	Parent=Os10t0389100-01
Chr10	irgsp1_rep	CDS	12879893	12880019	.	-	0	Parent=Os10t0389100-01
Chr10	irgsp1_rep	CDS	12879408	12879700	.	-	2	Parent=Os10t0389100-01
Chr10	irgsp1_rep	mRNA	12882265	12885756	.	+	.	ID=Os10t0389150-00;Name=Os10t0389150-00;Locus_id=Os10g0389150;Note=Non-protein coding transcript.;Transcript_evidence=CT835725 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os10t0389150-00
Chr10	irgsp1_rep	exon	12882265	12882331	.	+	.	Parent=Os10t0389150-00
Chr10	irgsp1_rep	exon	12882808	12882878	.	+	.	Parent=Os10t0389150-00
Chr10	irgsp1_rep	exon	12885393	12885756	.	+	.	Parent=Os10t0389150-00
Chr10	irgsp1_rep	mRNA	12886331	12888289	.	-	.	ID=Os10t0389200-01;Name=Os10t0389200-01;Locus_id=Os10g0389200;RAP-DB Gene Symbol Synonym(s)=OsRCCR1%2C RCCR1;RAP-DB Gene Name Synonym(s)=RED CHLOROPHYLL CATABOLITE REDUCTASE 1%2C red chlorophyll catabolite reductase 1;CGSNL Gene Symbol=RCCR1;CGSNL Gene Name=RED CHLOROPHYLL CATABOLITE REDUCTASE 1;Oryzabase Gene Symbol Synonym(s)=OsRCCR1%2C OsRCCR%2C RCCR;Oryzabase Gene Name Synonym(s)=red chlorophyll catabolite reductase 1;Note=Red chlorophyll catabolite reductase%2C Leaf senescence%2C Wound responses;Transcript_evidence=AK288034,JN604886;ORF_evidence=Q338P6;GO=Molecular Function: red chlorophyll catabolite reductase activity (GO:0051743);InterPro=Red chlorophyll catabolite reductase (IPR009439);NIAS_FLcDNA=J075140H07;Manual Curation=May 26%2C 2017;Literature_PMID=21807436;Oryzabase=14755;TENOR=Os10t0389200-01;KEGG=Os10t0389200-01 (EC:1.3.7.12)
Chr10	irgsp1_rep	five_prime_UTR	12888203	12888289	.	-	.	Parent=Os10t0389200-01
Chr10	irgsp1_rep	CDS	12887831	12888202	.	-	0	Parent=Os10t0389200-01
Chr10	irgsp1_rep	CDS	12886476	12887093	.	-	0	Parent=Os10t0389200-01
Chr10	irgsp1_rep	three_prime_UTR	12886331	12886475	.	-	.	Parent=Os10t0389200-01
Chr10	irgsp1_rep	mRNA	12890904	12894595	.	-	.	ID=Os10t0389300-01;Name=Os10t0389300-01;Locus_id=Os10g0389300;RAP-DB Gene Symbol Synonym(s)=RCCR2;RAP-DB Gene Name Synonym(s)=RED CHLOROPHYLL CATABOLITE REDUCTASE 2;CGSNL Gene Symbol=RCCR2;CGSNL Gene Name=RED CHLOROPHYLL CATABOLITE REDUCTASE 2;Oryzabase Gene Symbol Synonym(s)=OsRCCR2%2C OsRCCR1%2C RCCR1;Oryzabase Gene Name Synonym(s)=red chlorophyll catabolite reductase 2;Note=Similar to Red chlorophyll catabolite reductase (Fragment).;Transcript_evidence=AK287459 (DDBJ%2C Best hit);ORF_evidence=Q9MTQ6 (UniProt);InterPro=Red chlorophyll catabolite reductase (IPR009439);NIAS_FLcDNA=J043019O07;Manual Curation=May 29%2C 2017;Oryzabase=14756;TENOR=Os10t0389300-01;KEGG=Os10t0389300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	12892694	12894595	.	-	.	Parent=Os10t0389300-01
Chr10	irgsp1_rep	CDS	12892064	12892693	.	-	0	Parent=Os10t0389300-01
Chr10	irgsp1_rep	three_prime_UTR	12890904	12892063	.	-	.	Parent=Os10t0389300-01
Chr10	irgsp1_rep	mRNA	12891990	12894595	.	-	.	ID=Os10t0389300-02;Name=Os10t0389300-02;Locus_id=Os10g0389300;RAP-DB Gene Symbol Synonym(s)=OsRCCR2%2C RCCR2;RAP-DB Gene Name Synonym(s)=RED CHLOROPHYLL CATABOLITE REDUCTASE 2%2C red chlorophyll catabolite reductase 2;CGSNL Gene Symbol=RCCR2;CGSNL Gene Name=RED CHLOROPHYLL CATABOLITE REDUCTASE 2;Oryzabase Gene Symbol Synonym(s)=OsRCCR2%2C OsRCCR1%2C RCCR1;Oryzabase Gene Name Synonym(s)=red chlorophyll catabolite reductase 2;Note=Red chlorophyll catabolite reductase;Transcript_evidence=JN604887;ORF_evidence=G9I8W2;GO=Molecular Function: red chlorophyll catabolite reductase activity (GO:0051743);InterPro=Red chlorophyll catabolite reductase (IPR009439);Manual Curation=May 29%2C 2017;Literature_PMID=21807436;Oryzabase=14756
Chr10	irgsp1_rep	five_prime_UTR	12894496	12894595	.	-	.	Parent=Os10t0389300-02
Chr10	irgsp1_rep	CDS	12894157	12894495	.	-	0	Parent=Os10t0389300-02
Chr10	irgsp1_rep	CDS	12892064	12892702	.	-	0	Parent=Os10t0389300-02
Chr10	irgsp1_rep	three_prime_UTR	12891990	12892063	.	-	.	Parent=Os10t0389300-02
Chr10	irgsp1_rep	mRNA	12892097	12892849	.	+	.	ID=Os10t0389402-00;Name=Os10t0389402-00;Locus_id=Os10g0389402;Note=Hypothetical gene.;Transcript_evidence=CT835808 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os10t0389402-00;KEGG=Os10t0389402-00
Chr10	irgsp1_rep	CDS	12892097	12892753	.	+	0	Parent=Os10t0389402-00
Chr10	irgsp1_rep	three_prime_UTR	12892754	12892849	.	+	.	Parent=Os10t0389402-00
Chr10	irgsp1_rep	mRNA	12899339	12902125	.	-	.	ID=Os10t0389500-01;Name=Os10t0389500-01;Locus_id=Os10g0389500;Note=Conserved hypothetical protein.;Transcript_evidence=AK066066 (DDBJ%2C Best hit);ORF_evidence=B3GQ32 (UniProt);NIAS_FLcDNA=J013055E03;Expression=AK066066;TENOR=Os10t0389500-01;KEGG=Os10t0389500-01
Chr10	irgsp1_rep	five_prime_UTR	12901695	12902125	.	-	.	Parent=Os10t0389500-01
Chr10	irgsp1_rep	CDS	12901644	12901694	.	-	0	Parent=Os10t0389500-01
Chr10	irgsp1_rep	CDS	12900629	12901055	.	-	0	Parent=Os10t0389500-01
Chr10	irgsp1_rep	CDS	12899843	12899952	.	-	2	Parent=Os10t0389500-01
Chr10	irgsp1_rep	three_prime_UTR	12899819	12899842	.	-	.	Parent=Os10t0389500-01
Chr10	irgsp1_rep	three_prime_UTR	12899339	12899738	.	-	.	Parent=Os10t0389500-01
Chr10	irgsp1_rep	mRNA	12923153	12928312	.	-	.	ID=Os10t0389800-01;Name=Os10t0389800-01;Locus_id=Os10g0389800;Oryzabase Gene Name Synonym(s)=leucine-rich repeat kinase;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK111516 (DDBJ%2C Best hit);ORF_evidence=B6UIP4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J013002F24;Oryzabase=16287;Expression=AK111516;TENOR=Os10t0389800-01;KEGG=Os10t0389800-01
Chr10	irgsp1_rep	five_prime_UTR	12928253	12928312	.	-	.	Parent=Os10t0389800-01
Chr10	irgsp1_rep	CDS	12928153	12928252	.	-	0	Parent=Os10t0389800-01
Chr10	irgsp1_rep	CDS	12927128	12927260	.	-	2	Parent=Os10t0389800-01
Chr10	irgsp1_rep	CDS	12926964	12927035	.	-	1	Parent=Os10t0389800-01
Chr10	irgsp1_rep	CDS	12926804	12926878	.	-	1	Parent=Os10t0389800-01
Chr10	irgsp1_rep	CDS	12926610	12926681	.	-	1	Parent=Os10t0389800-01
Chr10	irgsp1_rep	CDS	12926452	12926523	.	-	1	Parent=Os10t0389800-01
Chr10	irgsp1_rep	CDS	12926244	12926315	.	-	1	Parent=Os10t0389800-01
Chr10	irgsp1_rep	CDS	12926103	12926168	.	-	1	Parent=Os10t0389800-01
Chr10	irgsp1_rep	CDS	12925956	12926021	.	-	1	Parent=Os10t0389800-01
Chr10	irgsp1_rep	CDS	12925581	12925882	.	-	1	Parent=Os10t0389800-01
Chr10	irgsp1_rep	CDS	12925201	12925490	.	-	2	Parent=Os10t0389800-01
Chr10	irgsp1_rep	CDS	12924550	12924821	.	-	0	Parent=Os10t0389800-01
Chr10	irgsp1_rep	CDS	12924189	12924324	.	-	1	Parent=Os10t0389800-01
Chr10	irgsp1_rep	CDS	12923877	12924007	.	-	0	Parent=Os10t0389800-01
Chr10	irgsp1_rep	CDS	12923609	12923765	.	-	1	Parent=Os10t0389800-01
Chr10	irgsp1_rep	CDS	12923365	12923508	.	-	0	Parent=Os10t0389800-01
Chr10	irgsp1_rep	three_prime_UTR	12923153	12923364	.	-	.	Parent=Os10t0389800-01
Chr10	irgsp1_rep	mRNA	12923213	12928284	.	+	.	ID=Os10t0389900-00;Name=Os10t0389900-00;Locus_id=Os10g0389900;Note=Hypothetical protein.;Transcript_evidence=tplb0047d04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0389900-00
Chr10	irgsp1_rep	five_prime_UTR	12923213	12923522	.	+	.	Parent=Os10t0389900-00
Chr10	irgsp1_rep	five_prime_UTR	12923621	12923750	.	+	.	Parent=Os10t0389900-00
Chr10	irgsp1_rep	five_prime_UTR	12923863	12924006	.	+	.	Parent=Os10t0389900-00
Chr10	irgsp1_rep	five_prime_UTR	12924188	12924333	.	+	.	Parent=Os10t0389900-00
Chr10	irgsp1_rep	five_prime_UTR	12924555	12924802	.	+	.	Parent=Os10t0389900-00
Chr10	irgsp1_rep	five_prime_UTR	12925186	12925487	.	+	.	Parent=Os10t0389900-00
Chr10	irgsp1_rep	five_prime_UTR	12925577	12925690	.	+	.	Parent=Os10t0389900-00
Chr10	irgsp1_rep	CDS	12925691	12925884	.	+	0	Parent=Os10t0389900-00
Chr10	irgsp1_rep	CDS	12925961	12926008	.	+	1	Parent=Os10t0389900-00
Chr10	irgsp1_rep	CDS	12926177	12926180	.	+	1	Parent=Os10t0389900-00
Chr10	irgsp1_rep	three_prime_UTR	12926181	12926317	.	+	.	Parent=Os10t0389900-00
Chr10	irgsp1_rep	three_prime_UTR	12926454	12926525	.	+	.	Parent=Os10t0389900-00
Chr10	irgsp1_rep	three_prime_UTR	12926612	12926681	.	+	.	Parent=Os10t0389900-00
Chr10	irgsp1_rep	three_prime_UTR	12926804	12926874	.	+	.	Parent=Os10t0389900-00
Chr10	irgsp1_rep	three_prime_UTR	12926966	12927034	.	+	.	Parent=Os10t0389900-00
Chr10	irgsp1_rep	three_prime_UTR	12927127	12927256	.	+	.	Parent=Os10t0389900-00
Chr10	irgsp1_rep	three_prime_UTR	12928148	12928284	.	+	.	Parent=Os10t0389900-00
Chr10	irgsp1_rep	mRNA	12937984	12939127	.	-	.	ID=Os10t0390000-00;Name=Os10t0390000-00;Locus_id=Os10g0390000;Note=Conserved hypothetical protein.;Transcript_evidence=CT835738 (DDBJ%2C Best hit);ORF_evidence=Q338P0 (UniProt);TENOR=Os10t0390000-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	12938929	12939127	.	-	.	Parent=Os10t0390000-00
Chr10	irgsp1_rep	CDS	12938827	12938928	.	-	0	Parent=Os10t0390000-00
Chr10	irgsp1_rep	CDS	12938215	12938622	.	-	0	Parent=Os10t0390000-00
Chr10	irgsp1_rep	three_prime_UTR	12937984	12938214	.	-	.	Parent=Os10t0390000-00
Chr10	irgsp1_rep	mRNA	12946103	12946820	.	-	.	ID=Os10t0390100-01;Name=Os10t0390100-01;Locus_id=Os10g0390100;Note=Non-protein coding transcript.;Transcript_evidence=AK111272 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-180-G02;TENOR=Os10t0390100-01
Chr10	irgsp1_rep	exon	12946103	12946820	.	-	.	Parent=Os10t0390100-01
Chr10	irgsp1_rep	mRNA	12940631	12946746	.	-	.	ID=Os10t0390100-02;Name=Os10t0390100-02;Locus_id=Os10g0390100;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK067341 (DDBJ%2C Best hit);ORF_evidence=A3C4C6 (UniProt);GO=Molecular Function: RNA binding (GO:0003723),Molecular Function: binding (GO:0005488);InterPro=Pumilio RNA-binding repeat (IPR001313),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013105N21;Expression=AK067341;TENOR=Os10t0390100-02;KEGG=Os10t0390100-02
Chr10	irgsp1_rep	five_prime_UTR	12946496	12946746	.	-	.	Parent=Os10t0390100-02
Chr10	irgsp1_rep	five_prime_UTR	12945672	12945695	.	-	.	Parent=Os10t0390100-02
Chr10	irgsp1_rep	CDS	12945343	12945671	.	-	0	Parent=Os10t0390100-02
Chr10	irgsp1_rep	CDS	12944855	12945218	.	-	1	Parent=Os10t0390100-02
Chr10	irgsp1_rep	CDS	12944476	12944781	.	-	0	Parent=Os10t0390100-02
Chr10	irgsp1_rep	CDS	12944210	12944374	.	-	0	Parent=Os10t0390100-02
Chr10	irgsp1_rep	CDS	12943837	12943980	.	-	0	Parent=Os10t0390100-02
Chr10	irgsp1_rep	CDS	12943207	12943326	.	-	0	Parent=Os10t0390100-02
Chr10	irgsp1_rep	CDS	12942936	12943115	.	-	0	Parent=Os10t0390100-02
Chr10	irgsp1_rep	CDS	12942407	12942555	.	-	0	Parent=Os10t0390100-02
Chr10	irgsp1_rep	CDS	12941575	12941757	.	-	1	Parent=Os10t0390100-02
Chr10	irgsp1_rep	CDS	12940917	12941496	.	-	1	Parent=Os10t0390100-02
Chr10	irgsp1_rep	three_prime_UTR	12940631	12940916	.	-	.	Parent=Os10t0390100-02
Chr10	irgsp1_rep	mRNA	12968039	12974099	.	+	.	ID=Os10t0390500-01;Name=Os10t0390500-01;Locus_id=Os10g0390500;RAP-DB Gene Symbol Synonym(s)=ALAAT%2C alaAT%2C ALT-1%2C OsAlaAT1%2C AlaAT1;RAP-DB Gene Name Synonym(s)=ALANINE AMINOTRANSFERASE%2C alanine aminotransferase%2C Alanine transaminase 1%2C alanine-aminotransferase1;CGSNL Gene Symbol=ALAAT;CGSNL Gene Name=ALANINE AMINOTRANSFERASE;Oryzabase Gene Symbol Synonym(s)=alaAT%2C ALT-1%2C OsAlaAT1%2C AlaAT1;Oryzabase Gene Name Synonym(s)=alanine aminotransferase%2C Alanine transaminase 1%2C alanine-aminotransferase1;Note=Alanine aminotransferase%2C Starch synthesis in developing seeds;Transcript_evidence=EU267962 (Ilpumbyeo),AB007405;ORF_evidence=Q338N8;GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent transferase (IPR015424),Aminotransferase%2C class I/classII (IPR004839),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422);Manual Curation=November 5%2C 2015;Literature_PMID=26475189,10080717;Oryzabase=6005;TENOR=Os10t0390500-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	12968039	12968106	.	+	.	Parent=Os10t0390500-01
Chr10	irgsp1_rep	CDS	12968107	12968148	.	+	0	Parent=Os10t0390500-01
Chr10	irgsp1_rep	CDS	12969696	12969746	.	+	0	Parent=Os10t0390500-01
Chr10	irgsp1_rep	CDS	12970351	12970401	.	+	0	Parent=Os10t0390500-01
Chr10	irgsp1_rep	CDS	12970476	12970541	.	+	0	Parent=Os10t0390500-01
Chr10	irgsp1_rep	CDS	12970608	12970669	.	+	0	Parent=Os10t0390500-01
Chr10	irgsp1_rep	CDS	12971056	12971134	.	+	1	Parent=Os10t0390500-01
Chr10	irgsp1_rep	CDS	12971215	12971319	.	+	0	Parent=Os10t0390500-01
Chr10	irgsp1_rep	CDS	12971421	12971531	.	+	0	Parent=Os10t0390500-01
Chr10	irgsp1_rep	CDS	12971614	12971751	.	+	0	Parent=Os10t0390500-01
Chr10	irgsp1_rep	CDS	12971997	12972071	.	+	0	Parent=Os10t0390500-01
Chr10	irgsp1_rep	CDS	12972171	12972291	.	+	0	Parent=Os10t0390500-01
Chr10	irgsp1_rep	CDS	12972365	12972519	.	+	2	Parent=Os10t0390500-01
Chr10	irgsp1_rep	CDS	12972601	12972675	.	+	0	Parent=Os10t0390500-01
Chr10	irgsp1_rep	CDS	12972757	12972960	.	+	0	Parent=Os10t0390500-01
Chr10	irgsp1_rep	CDS	12973702	12973818	.	+	0	Parent=Os10t0390500-01
Chr10	irgsp1_rep	three_prime_UTR	12973819	12974099	.	+	.	Parent=Os10t0390500-01
Chr10	irgsp1_rep	mRNA	12969694	12970543	.	-	.	ID=Os10t0390550-00;Name=Os10t0390550-00;Locus_id=Os10g0390550;Note=Non-protein coding transcript.;Transcript_evidence=BT085040 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0390550-00
Chr10	irgsp1_rep	exon	12970423	12970543	.	-	.	Parent=Os10t0390550-00
Chr10	irgsp1_rep	exon	12969694	12969750	.	-	.	Parent=Os10t0390550-00
Chr10	irgsp1_rep	mRNA	12977443	12982476	.	+	.	ID=Os10t0390600-01;Name=Os10t0390600-01;Locus_id=Os10g0390600;CGSNL Gene Symbol=ALAAT4;CGSNL Gene Name=ALANINE AMINOTRANSFERASE 4;Oryzabase Gene Symbol Synonym(s)=OsAlaAT4%2C AlaAT4;Oryzabase Gene Name Synonym(s)=Alanine transaminase 4%2C alanine-aminotransferase4;Note=Similar to Alanine aminotransferase 2 (EC 2.6.1.2) (GPT) (Glutamic--pyruvic transaminase 2) (Glutamic--alanine transaminase 2) (ALAAT-2).;Transcript_evidence=AK107029 (DDBJ%2C Best hit);ORF_evidence=P34106 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Biological Process: 1-aminocyclopropane-1-carboxylate biosynthetic process (GO:0042218),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: 1-aminocyclopropane-1-carboxylate synthase activity (GO:0016847),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=1-aminocyclopropane-1-carboxylate synthase (IPR001176),Aminotransferase%2C class I/classII (IPR004839),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=002-121-A10;Oryzabase=20401;Expression=AK107029;TENOR=Os10t0390600-01;KEGG=Os10t0390600-01 (EC:2.6.1.2)
Chr10	irgsp1_rep	five_prime_UTR	12977443	12977582	.	+	.	Parent=Os10t0390600-01
Chr10	irgsp1_rep	CDS	12977583	12977633	.	+	0	Parent=Os10t0390600-01
Chr10	irgsp1_rep	CDS	12977705	12977758	.	+	0	Parent=Os10t0390600-01
Chr10	irgsp1_rep	CDS	12978263	12978313	.	+	0	Parent=Os10t0390600-01
Chr10	irgsp1_rep	CDS	12978443	12978506	.	+	0	Parent=Os10t0390600-01
Chr10	irgsp1_rep	CDS	12978591	12978654	.	+	2	Parent=Os10t0390600-01
Chr10	irgsp1_rep	CDS	12978753	12978828	.	+	1	Parent=Os10t0390600-01
Chr10	irgsp1_rep	CDS	12978912	12979019	.	+	0	Parent=Os10t0390600-01
Chr10	irgsp1_rep	CDS	12979426	12979536	.	+	0	Parent=Os10t0390600-01
Chr10	irgsp1_rep	CDS	12979626	12979763	.	+	0	Parent=Os10t0390600-01
Chr10	irgsp1_rep	CDS	12979845	12979919	.	+	0	Parent=Os10t0390600-01
Chr10	irgsp1_rep	CDS	12980017	12980137	.	+	0	Parent=Os10t0390600-01
Chr10	irgsp1_rep	CDS	12981424	12981578	.	+	2	Parent=Os10t0390600-01
Chr10	irgsp1_rep	CDS	12981677	12981751	.	+	0	Parent=Os10t0390600-01
Chr10	irgsp1_rep	CDS	12981867	12982070	.	+	0	Parent=Os10t0390600-01
Chr10	irgsp1_rep	CDS	12982267	12982383	.	+	0	Parent=Os10t0390600-01
Chr10	irgsp1_rep	three_prime_UTR	12982384	12982476	.	+	.	Parent=Os10t0390600-01
Chr10	irgsp1_rep	mRNA	12983013	12983507	.	+	.	ID=Os10t0390701-00;Name=Os10t0390701-00;Locus_id=Os10g0390701;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001176137.1 (RefSeq);TENOR=Os10t0390701-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	12983013	12983087	.	+	0	Parent=Os10t0390701-00
Chr10	irgsp1_rep	CDS	12983172	12983296	.	+	0	Parent=Os10t0390701-00
Chr10	irgsp1_rep	CDS	12983381	12983507	.	+	1	Parent=Os10t0390701-00
Chr10	irgsp1_rep	mRNA	12992051	12993413	.	+	.	ID=Os10t0390800-01;Name=Os10t0390800-01;Locus_id=Os10g0390800;CGSNL Gene Symbol=ERF59;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 59;Oryzabase Gene Symbol Synonym(s)=OsERF#059%2C OsERF059%2C OsERF59%2C EBL1%2C AP2/EREBP#006%2C AP2/EREBP6;Oryzabase Gene Name Synonym(s)=ETHYLENE-RESPONSIVE ELEMENT-BINDING PROTEIN1-LIKE 1%2C ethylene response factor 59%2C APETALA2/ethylene-responsive element binding protein 6;Note=Similar to Ethylene-responsive transcription factor 3 (Ethylene-responsive element binding factor 3) (EREBP-3) (AtERF3).;Transcript_evidence=AK110269 (DDBJ%2C Best hit);ORF_evidence=Q338N5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=002-163-C07;Oryzabase=8854;Expression=AK110269;TENOR=Os10t0390800-01;KEGG=Os10t0390800-01
Chr10	irgsp1_rep	five_prime_UTR	12992051	12992117	.	+	.	Parent=Os10t0390800-01
Chr10	irgsp1_rep	CDS	12992118	12992382	.	+	0	Parent=Os10t0390800-01
Chr10	irgsp1_rep	CDS	12992486	12993120	.	+	2	Parent=Os10t0390800-01
Chr10	irgsp1_rep	three_prime_UTR	12993121	12993413	.	+	.	Parent=Os10t0390800-01
Chr10	irgsp1_rep	mRNA	12995068	13001222	.	-	.	ID=Os10t0390900-00;Name=Os10t0390900-00;Locus_id=Os10g0390900;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q94HD0 (UniProt);GO=Molecular Function: phosphoric ester hydrolase activity (GO:0042578);InterPro=Synaptojanin%2C N-terminal (IPR002013);TENOR=Os10t0390900-00;KEGG=Os10t0390900-00
Chr10	irgsp1_rep	CDS	13001068	13001222	.	-	0	Parent=Os10t0390900-00
Chr10	irgsp1_rep	CDS	12999611	12999686	.	-	1	Parent=Os10t0390900-00
Chr10	irgsp1_rep	CDS	12999357	12999430	.	-	0	Parent=Os10t0390900-00
Chr10	irgsp1_rep	CDS	12998599	12998914	.	-	1	Parent=Os10t0390900-00
Chr10	irgsp1_rep	CDS	12998238	12998350	.	-	0	Parent=Os10t0390900-00
Chr10	irgsp1_rep	CDS	12998032	12998142	.	-	1	Parent=Os10t0390900-00
Chr10	irgsp1_rep	CDS	12995068	12995209	.	-	1	Parent=Os10t0390900-00
Chr10	irgsp1_rep	mRNA	13012034	13014114	.	+	.	ID=Os10t0391100-01;Name=Os10t0391100-01;Locus_id=Os10g0391100;Note=Conserved hypothetical protein.;Transcript_evidence=AK063378 (DDBJ%2C Best hit);ORF_evidence=Q7XEZ9 (UniProt);NIAS_FLcDNA=001-114-F06;TENOR=Os10t0391100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	13012034	13012034	.	+	.	Parent=Os10t0391100-01
Chr10	irgsp1_rep	CDS	13012035	13012097	.	+	0	Parent=Os10t0391100-01
Chr10	irgsp1_rep	CDS	13012193	13012231	.	+	0	Parent=Os10t0391100-01
Chr10	irgsp1_rep	CDS	13012321	13013775	.	+	0	Parent=Os10t0391100-01
Chr10	irgsp1_rep	three_prime_UTR	13013776	13014114	.	+	.	Parent=Os10t0391100-01
Chr10	irgsp1_rep	mRNA	13016331	13017947	.	-	.	ID=Os10t0391200-00;Name=Os10t0391200-00;Locus_id=Os10g0391200;Oryzabase Gene Symbol Synonym(s)=OsFbox550%2C Os_F0263;Oryzabase Gene Name Synonym(s)=F-box protein 550;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=EU962621 (DDBJ);ORF_evidence=NP_001064509.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated domain%2C type 3 (IPR013187),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17319;TENOR=Os10t0391200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	13016469	13017947	.	-	0	Parent=Os10t0391200-00
Chr10	irgsp1_rep	three_prime_UTR	13016331	13016468	.	-	.	Parent=Os10t0391200-00
Chr10	irgsp1_rep	mRNA	13018805	13023203	.	-	.	ID=Os10t0391300-00;Name=Os10t0391300-00;Locus_id=Os10g0391300;CGSNL Gene Symbol=C3H62;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 62;Oryzabase Gene Symbol Synonym(s)=OsC3H62;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 62;Note=DNA-binding SAP domain containing protein.;Transcript_evidence=AK374966 (DDBJ);ORF_evidence=B8BGM9 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=DNA-binding SAP (IPR003034);Oryzabase=8628;TENOR=Os10t0391300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	13022893	13023203	.	-	0	Parent=Os10t0391300-00
Chr10	irgsp1_rep	CDS	13022603	13022676	.	-	1	Parent=Os10t0391300-00
Chr10	irgsp1_rep	CDS	13022000	13022114	.	-	2	Parent=Os10t0391300-00
Chr10	irgsp1_rep	CDS	13021817	13021875	.	-	1	Parent=Os10t0391300-00
Chr10	irgsp1_rep	CDS	13021473	13021524	.	-	2	Parent=Os10t0391300-00
Chr10	irgsp1_rep	CDS	13021250	13021361	.	-	1	Parent=Os10t0391300-00
Chr10	irgsp1_rep	CDS	13021053	13021151	.	-	0	Parent=Os10t0391300-00
Chr10	irgsp1_rep	CDS	13020844	13020975	.	-	0	Parent=Os10t0391300-00
Chr10	irgsp1_rep	three_prime_UTR	13020588	13020843	.	-	.	Parent=Os10t0391300-00
Chr10	irgsp1_rep	three_prime_UTR	13019742	13020040	.	-	.	Parent=Os10t0391300-00
Chr10	irgsp1_rep	three_prime_UTR	13018805	13019506	.	-	.	Parent=Os10t0391300-00
Chr10	irgsp1_rep	mRNA	13031180	13032006	.	-	.	ID=Os10t0391400-01;Name=Os10t0391400-01;Locus_id=Os10g0391400;RAP-DB Gene Symbol Synonym(s)=OsJAZ13%2C OsTIFY11e%2C OsJAZ13a;RAP-DB Gene Name Synonym(s)=Jasmonate ZIM-domain protein 13;CGSNL Gene Symbol=TIFY11E;CGSNL Gene Name=TIFY GENE 11E;Oryzabase Gene Symbol Synonym(s)=OsJAZ 13%2C OsJAZ13%2C JAZ13%2C OsTIFY11e;Oryzabase Gene Name Synonym(s)=Jasmonate ZIM-domain protein 13;Note=Jasmonate ZIM-domain (JAZ) protein%2C TIFY family protein%2C Negative regulation of JA signal transduction pathway%2C Activation of hypersensitive cell death;Transcript_evidence=AK107854;ORF_evidence=Q7XEZ6;InterPro=Tify domain (IPR010399),CO/COL/TOC1%2C conserved site (IPR018467);NIAS_FLcDNA=002-134-A12;Manual Curation=June 25%2C 2020;Literature_PMID=32575555;Oryzabase=15069;Expression=AK107854;TENOR=Os10t0391400-01;KEGG=Os10t0391400-01;Subcellular location=nucleus (GO:0005634)
Chr10	irgsp1_rep	five_prime_UTR	13031904	13032006	.	-	.	Parent=Os10t0391400-01
Chr10	irgsp1_rep	CDS	13031403	13031903	.	-	0	Parent=Os10t0391400-01
Chr10	irgsp1_rep	three_prime_UTR	13031180	13031402	.	-	.	Parent=Os10t0391400-01
Chr10	irgsp1_rep	mRNA	13036738	13040650	.	-	.	ID=Os10t0391500-01;Name=Os10t0391500-01;Locus_id=Os10g0391500;Note=Conserved hypothetical protein.;Transcript_evidence=AK120406 (DDBJ%2C Best hit);ORF_evidence=B8BGN0 (UniProt);NIAS_FLcDNA=J013089P03;Expression=AK120406;TENOR=Os10t0391500-01;KEGG=Os10t0391500-01
Chr10	irgsp1_rep	five_prime_UTR	13040573	13040650	.	-	.	Parent=Os10t0391500-01
Chr10	irgsp1_rep	CDS	13040288	13040572	.	-	0	Parent=Os10t0391500-01
Chr10	irgsp1_rep	three_prime_UTR	13040244	13040287	.	-	.	Parent=Os10t0391500-01
Chr10	irgsp1_rep	three_prime_UTR	13040039	13040133	.	-	.	Parent=Os10t0391500-01
Chr10	irgsp1_rep	three_prime_UTR	13038965	13039888	.	-	.	Parent=Os10t0391500-01
Chr10	irgsp1_rep	three_prime_UTR	13037420	13038464	.	-	.	Parent=Os10t0391500-01
Chr10	irgsp1_rep	three_prime_UTR	13036738	13037244	.	-	.	Parent=Os10t0391500-01
Chr10	irgsp1_rep	mRNA	13037638	13040650	.	-	.	ID=Os10t0391500-02;Name=Os10t0391500-02;Locus_id=Os10g0391500;Note=Conserved hypothetical protein.;Transcript_evidence=AK068643 (DDBJ%2C Best hit);ORF_evidence=B8BGN0 (UniProt);NIAS_FLcDNA=J013159J07;Expression=AK068643;TENOR=Os10t0391500-02;KEGG=Os10t0391500-02
Chr10	irgsp1_rep	five_prime_UTR	13040573	13040650	.	-	.	Parent=Os10t0391500-02
Chr10	irgsp1_rep	CDS	13040288	13040572	.	-	0	Parent=Os10t0391500-02
Chr10	irgsp1_rep	three_prime_UTR	13040039	13040287	.	-	.	Parent=Os10t0391500-02
Chr10	irgsp1_rep	three_prime_UTR	13038965	13039888	.	-	.	Parent=Os10t0391500-02
Chr10	irgsp1_rep	three_prime_UTR	13037638	13038464	.	-	.	Parent=Os10t0391500-02
Chr10	irgsp1_rep	mRNA	13037019	13040601	.	-	.	ID=Os10t0391500-03;Name=Os10t0391500-03;Locus_id=Os10g0391500;Note=Conserved hypothetical protein.;Transcript_evidence=AK102238 (DDBJ%2C Best hit);ORF_evidence=B8BGN0 (UniProt);NIAS_FLcDNA=J033088C18;Expression=AK102238;TENOR=Os10t0391500-03;KEGG=Os10t0391500-03
Chr10	irgsp1_rep	five_prime_UTR	13040573	13040601	.	-	.	Parent=Os10t0391500-03
Chr10	irgsp1_rep	CDS	13040288	13040572	.	-	0	Parent=Os10t0391500-03
Chr10	irgsp1_rep	three_prime_UTR	13040244	13040287	.	-	.	Parent=Os10t0391500-03
Chr10	irgsp1_rep	three_prime_UTR	13040039	13040133	.	-	.	Parent=Os10t0391500-03
Chr10	irgsp1_rep	three_prime_UTR	13038965	13039888	.	-	.	Parent=Os10t0391500-03
Chr10	irgsp1_rep	three_prime_UTR	13038415	13038464	.	-	.	Parent=Os10t0391500-03
Chr10	irgsp1_rep	three_prime_UTR	13037947	13038082	.	-	.	Parent=Os10t0391500-03
Chr10	irgsp1_rep	three_prime_UTR	13037420	13037582	.	-	.	Parent=Os10t0391500-03
Chr10	irgsp1_rep	three_prime_UTR	13037019	13037244	.	-	.	Parent=Os10t0391500-03
Chr10	irgsp1_rep	mRNA	13037003	13039338	.	-	.	ID=Os10t0391500-04;Name=Os10t0391500-04;Locus_id=Os10g0391500;Note=Conserved hypothetical protein.;Transcript_evidence=AK071928 (DDBJ%2C Best hit);ORF_evidence=NP_001173508.1 (RefSeq);NIAS_FLcDNA=J013073I01;TENOR=Os10t0391500-04;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	13038965	13039338	.	-	.	Parent=Os10t0391500-04
Chr10	irgsp1_rep	five_prime_UTR	13037583	13038464	.	-	.	Parent=Os10t0391500-04
Chr10	irgsp1_rep	CDS	13037420	13037582	.	-	0	Parent=Os10t0391500-04
Chr10	irgsp1_rep	CDS	13037162	13037244	.	-	2	Parent=Os10t0391500-04
Chr10	irgsp1_rep	three_prime_UTR	13037003	13037161	.	-	.	Parent=Os10t0391500-04
Chr10	irgsp1_rep	mRNA	13042901	13046977	.	-	.	ID=Os10t0391801-01;Name=Os10t0391801-01;Locus_id=Os10g0391801;RAP-DB Gene Symbol Synonym(s)=OsJAZ14%2C OsTIFY11f;RAP-DB Gene Name Synonym(s)=Jasmonate ZIM-domain protein 14;CGSNL Gene Symbol=TIFY11F;CGSNL Gene Name=TIFY GENE 11F;Oryzabase Gene Symbol Synonym(s)=OsJAZ 14%2C OsJAZ14%2C JAZ14%2C OsTIFY11f;Oryzabase Gene Name Synonym(s)=Jasmonate ZIM-domain protein 14;Note=A member of the JASMONATE ZIM-domain (JAZ) family;Transcript_evidence=Inferred from literature;ORF_evidence=Q7XEZ4;InterPro=Tify domain (IPR010399),CO/COL/TOC1%2C conserved site (IPR018467);Manual Curation=June 30%2C 2020;Literature_PMID=19618278;Oryzabase=15070;TENOR=Os10t0391801-00,Os10t0392101-00
Chr10	irgsp1_rep	CDS	13046553	13046977	.	-	0	Parent=Os10t0391801-01
Chr10	irgsp1_rep	CDS	13044979	13045009	.	-	1	Parent=Os10t0391801-01
Chr10	irgsp1_rep	CDS	13042901	13043437	.	-	0	Parent=Os10t0391801-01
Chr10	irgsp1_rep	mRNA	13069770	13070894	.	-	.	ID=Os10t0392400-01;Name=Os10t0392400-01;Locus_id=Os10g0392400;CGSNL Gene Symbol=TIFY11D;CGSNL Gene Name=TIFY GENE 11D;Oryzabase Gene Symbol Synonym(s)=OsTIFY11d%2C OsJAZ1%2C JAZ1%2C OsJAZ 12%2C OsJAZ12%2C JAZ12;Oryzabase Gene Name Synonym(s)=Jasmonate ZIM-domain protein 1%2C Jasmonate ZIM-domain protein 12;Note=Tify domain containing protein.;Transcript_evidence=AK061602 (DDBJ%2C Best hit);ORF_evidence=A2Z6V9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Tify (IPR010399),CO/COL/TOC1%2C conserved site (IPR018467);NIAS_FLcDNA=001-027-G06;Oryzabase=9486;Expression=AK061602;TENOR=Os10t0392400-01;KEGG=Os10t0392400-01
Chr10	irgsp1_rep	five_prime_UTR	13070788	13070894	.	-	.	Parent=Os10t0392400-01
Chr10	irgsp1_rep	CDS	13070387	13070787	.	-	0	Parent=Os10t0392400-01
Chr10	irgsp1_rep	CDS	13070071	13070185	.	-	1	Parent=Os10t0392400-01
Chr10	irgsp1_rep	three_prime_UTR	13069770	13070070	.	-	.	Parent=Os10t0392400-01
Chr10	irgsp1_rep	mRNA	13080825	13084158	.	-	.	ID=Os10t0392500-00;Name=Os10t0392500-00;Locus_id=Os10g0392500;Note=Similar to RNA methyltransferase%2C TrmH family protein%2C expressed.;Transcript_evidence=AK066152 (DDBJ%2C Secondary hit);ORF_evidence=Q10T58 (UniProt);Expression=AK066152;TENOR=Os10t0392500-00;KEGG=Os10t0392500-00
Chr10	irgsp1_rep	five_prime_UTR	13083082	13084158	.	-	.	Parent=Os10t0392500-00
Chr10	irgsp1_rep	five_prime_UTR	13082894	13082968	.	-	.	Parent=Os10t0392500-00
Chr10	irgsp1_rep	CDS	13082793	13082893	.	-	0	Parent=Os10t0392500-00
Chr10	irgsp1_rep	CDS	13082581	13082716	.	-	1	Parent=Os10t0392500-00
Chr10	irgsp1_rep	three_prime_UTR	13082517	13082580	.	-	.	Parent=Os10t0392500-00
Chr10	irgsp1_rep	three_prime_UTR	13082095	13082421	.	-	.	Parent=Os10t0392500-00
Chr10	irgsp1_rep	three_prime_UTR	13080825	13080924	.	-	.	Parent=Os10t0392500-00
Chr10	irgsp1_rep	mRNA	13088845	13091075	.	+	.	ID=Os10t0392600-01;Name=Os10t0392600-01;Locus_id=Os10g0392600;RAP-DB Gene Symbol Synonym(s)=OsSPX3;RAP-DB Gene Name Synonym(s)=SPX (SYG/PHO81/XPR1) domain gene 3;CGSNL Gene Symbol=SPX3;CGSNL Gene Name=SPX DOMAIN PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsSPX3;Oryzabase Gene Name Synonym(s)=SPX (SYG/PHO81/XPR1) domain gene 3%2C SPX domain protein 3;Note=SPX domain-containing protein%2C Negative regulation of phosphate signaling%2C Pi homeostasis;Transcript_evidence=AK108539;ORF_evidence=Q7XEY9;GO=Biological Process: cellular response to phosphate starvation (GO:0016036);InterPro=SPX domain-containing protein (IPR031142),SPX%2C N-terminal (IPR004331);NIAS_FLcDNA=002-144-C12;Manual Curation=July 6%2C 2015;Literature_PMID=24368504,19566645;Oryzabase=11154;Expression=AK108539;TENOR=Os10t0392600-01;KEGG=Os10t0392600-01
Chr10	irgsp1_rep	five_prime_UTR	13088845	13088941	.	+	.	Parent=Os10t0392600-01
Chr10	irgsp1_rep	CDS	13088942	13089178	.	+	0	Parent=Os10t0392600-01
Chr10	irgsp1_rep	CDS	13089269	13089419	.	+	0	Parent=Os10t0392600-01
Chr10	irgsp1_rep	CDS	13090489	13090934	.	+	2	Parent=Os10t0392600-01
Chr10	irgsp1_rep	three_prime_UTR	13090935	13091075	.	+	.	Parent=Os10t0392600-01
Chr10	irgsp1_rep	mRNA	13088941	13090873	.	-	.	ID=Os10t0392650-00;Name=Os10t0392650-00;Locus_id=Os10g0392650;Note=Hypothetical gene.;Transcript_evidence=EU963876 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0392650-00;KEGG=Os10t0392650-00
Chr10	irgsp1_rep	five_prime_UTR	13090871	13090873	.	-	.	Parent=Os10t0392650-00
Chr10	irgsp1_rep	CDS	13090488	13090870	.	-	0	Parent=Os10t0392650-00
Chr10	irgsp1_rep	CDS	13089408	13089417	.	-	1	Parent=Os10t0392650-00
Chr10	irgsp1_rep	three_prime_UTR	13089283	13089407	.	-	.	Parent=Os10t0392650-00
Chr10	irgsp1_rep	three_prime_UTR	13088941	13089180	.	-	.	Parent=Os10t0392650-00
Chr10	irgsp1_rep	mRNA	13095856	13096752	.	-	.	ID=Os10t0392700-01;Name=Os10t0392700-01;Locus_id=Os10g0392700;Note=Similar to Initiation factor 2 subunit family protein%2C expressed.;Transcript_evidence=AK109292 (DDBJ%2C Best hit);ORF_evidence=Q7XEY8 (UniProt);NIAS_FLcDNA=002-188-C12;Expression=AK109292;TENOR=Os10t0392700-01;KEGG=Os10t0392700-01
Chr10	irgsp1_rep	five_prime_UTR	13096495	13096752	.	-	.	Parent=Os10t0392700-01
Chr10	irgsp1_rep	CDS	13096273	13096494	.	-	0	Parent=Os10t0392700-01
Chr10	irgsp1_rep	three_prime_UTR	13095856	13096272	.	-	.	Parent=Os10t0392700-01
Chr10	irgsp1_rep	mRNA	13091133	13096726	.	-	.	ID=Os10t0392700-02;Name=Os10t0392700-02;Locus_id=Os10g0392700;Note=Similar to Initiation factor 2 subunit family protein%2C expressed.;Transcript_evidence=AK068830 (DDBJ%2C Best hit);ORF_evidence=Q7XEY8 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237);InterPro=Initiation factor 2B-related (IPR000649);NIAS_FLcDNA=J013159B16;Expression=AK068830;TENOR=Os10t0392700-02;KEGG=Os10t0392700-02
Chr10	irgsp1_rep	CDS	13096565	13096726	.	-	0	Parent=Os10t0392700-02
Chr10	irgsp1_rep	CDS	13096420	13096459	.	-	0	Parent=Os10t0392700-02
Chr10	irgsp1_rep	CDS	13096305	13096337	.	-	2	Parent=Os10t0392700-02
Chr10	irgsp1_rep	CDS	13094944	13095225	.	-	2	Parent=Os10t0392700-02
Chr10	irgsp1_rep	CDS	13094602	13094731	.	-	2	Parent=Os10t0392700-02
Chr10	irgsp1_rep	CDS	13093344	13093451	.	-	1	Parent=Os10t0392700-02
Chr10	irgsp1_rep	CDS	13093138	13093240	.	-	1	Parent=Os10t0392700-02
Chr10	irgsp1_rep	CDS	13092903	13093055	.	-	0	Parent=Os10t0392700-02
Chr10	irgsp1_rep	three_prime_UTR	13091917	13092902	.	-	.	Parent=Os10t0392700-02
Chr10	irgsp1_rep	three_prime_UTR	13091133	13091549	.	-	.	Parent=Os10t0392700-02
Chr10	irgsp1_rep	mRNA	13104770	13105796	.	+	.	ID=Os10t0392800-00;Name=Os10t0392800-00;Locus_id=Os10g0392800;CGSNL Gene Symbol=GELP103;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 103;Oryzabase Gene Symbol Synonym(s)=OsGELP103;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 103;Note=Similar to esterase.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001147763.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);Oryzabase=11053;TENOR=Os10t0392800-00
Chr10	irgsp1_rep	CDS	13104770	13105064	.	+	0	Parent=Os10t0392800-00
Chr10	irgsp1_rep	CDS	13105467	13105682	.	+	2	Parent=Os10t0392800-00
Chr10	irgsp1_rep	CDS	13105774	13105796	.	+	2	Parent=Os10t0392800-00
Chr10	irgsp1_rep	mRNA	13107087	13108437	.	+	.	ID=Os10t0392900-00;Name=Os10t0392900-00;Locus_id=Os10g0392900;CGSNL Gene Symbol=GELP103;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 103;Oryzabase Gene Symbol Synonym(s)=OsGELP103;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 103;Note=Similar to esterase.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001147763.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);Oryzabase=11053;TENOR=Os10t0392900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	13107087	13107251	.	+	0	Parent=Os10t0392900-00
Chr10	irgsp1_rep	CDS	13107338	13107614	.	+	0	Parent=Os10t0392900-00
Chr10	irgsp1_rep	CDS	13108148	13108437	.	+	2	Parent=Os10t0392900-00
Chr10	irgsp1_rep	mRNA	13112739	13115214	.	-	.	ID=Os10t0393100-01;Name=Os10t0393100-01;Locus_id=Os10g0393100;Note=Peptidase A22B%2C signal peptide peptidase domain containing protein.;Transcript_evidence=AK072853 (DDBJ%2C Best hit);ORF_evidence=NP_001151225.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A22%2C presenilin signal peptide (IPR006639),Peptidase A22B%2C signal peptide peptidase (IPR007369);NIAS_FLcDNA=J023135L10;Expression=AK072853;TENOR=Os10t0393100-01;KEGG=Os10t0393100-01 (EC:3.4.23.-)
Chr10	irgsp1_rep	five_prime_UTR	13115046	13115214	.	-	.	Parent=Os10t0393100-01
Chr10	irgsp1_rep	five_prime_UTR	13114861	13114904	.	-	.	Parent=Os10t0393100-01
Chr10	irgsp1_rep	CDS	13114063	13114860	.	-	0	Parent=Os10t0393100-01
Chr10	irgsp1_rep	CDS	13113225	13113425	.	-	0	Parent=Os10t0393100-01
Chr10	irgsp1_rep	CDS	13112927	13113043	.	-	0	Parent=Os10t0393100-01
Chr10	irgsp1_rep	three_prime_UTR	13112739	13112926	.	-	.	Parent=Os10t0393100-01
Chr10	irgsp1_rep	mRNA	13112738	13115174	.	-	.	ID=Os10t0393100-02;Name=Os10t0393100-02;Locus_id=Os10g0393100;Note=Peptidase A22B%2C signal peptide peptidase domain containing protein.;Transcript_evidence=AK061008 (DDBJ%2C Best hit);ORF_evidence=NP_001151225.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A22%2C presenilin signal peptide (IPR006639),Peptidase A22B%2C signal peptide peptidase (IPR007369);NIAS_FLcDNA=006-204-A08;TENOR=Os10t0393100-02
Chr10	irgsp1_rep	five_prime_UTR	13115046	13115174	.	-	.	Parent=Os10t0393100-02
Chr10	irgsp1_rep	five_prime_UTR	13114861	13114904	.	-	.	Parent=Os10t0393100-02
Chr10	irgsp1_rep	CDS	13114063	13114860	.	-	0	Parent=Os10t0393100-02
Chr10	irgsp1_rep	CDS	13113225	13113425	.	-	0	Parent=Os10t0393100-02
Chr10	irgsp1_rep	CDS	13112927	13113043	.	-	0	Parent=Os10t0393100-02
Chr10	irgsp1_rep	three_prime_UTR	13112738	13112926	.	-	.	Parent=Os10t0393100-02
Chr10	irgsp1_rep	mRNA	13123214	13125751	.	+	.	ID=Os10t0393600-00;Name=Os10t0393600-00;Locus_id=Os10g0393600;CGSNL Gene Symbol=GELP104;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 104;Oryzabase Gene Symbol Synonym(s)=OsGELP104;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 104;Note=Similar to esterase.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001147763.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);Oryzabase=11054;TENOR=Os10t0393600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	13123214	13123532	.	+	0	Parent=Os10t0393600-00
Chr10	irgsp1_rep	CDS	13124508	13124723	.	+	2	Parent=Os10t0393600-00
Chr10	irgsp1_rep	CDS	13125519	13125751	.	+	2	Parent=Os10t0393600-00
Chr10	irgsp1_rep	mRNA	13126198	13127542	.	+	.	ID=Os10t0393700-00;Name=Os10t0393700-00;Locus_id=Os10g0393700;CGSNL Gene Symbol=GELP104;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 104;Oryzabase Gene Symbol Synonym(s)=OsGELP104;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 104;Note=Similar to esterase.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001147763.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);Oryzabase=11054;TENOR=Os10t0393700-00
Chr10	irgsp1_rep	CDS	13126198	13126548	.	+	0	Parent=Os10t0393700-00
Chr10	irgsp1_rep	CDS	13126857	13127136	.	+	0	Parent=Os10t0393700-00
Chr10	irgsp1_rep	CDS	13127340	13127542	.	+	2	Parent=Os10t0393700-00
Chr10	irgsp1_rep	mRNA	13131433	13133327	.	+	.	ID=Os10t0393800-01;Name=Os10t0393800-01;Locus_id=Os10g0393800;CGSNL Gene Symbol=GELP105;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 105;Oryzabase Gene Symbol Synonym(s)=OsGELP105;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 105;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK108245 (DDBJ%2C Best hit);ORF_evidence=NP_001147763.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=002-140-H05;Oryzabase=11055;Expression=AK108245;TENOR=Os10t0393800-01;KEGG=Os10t0393800-01
Chr10	irgsp1_rep	five_prime_UTR	13131433	13131495	.	+	.	Parent=Os10t0393800-01
Chr10	irgsp1_rep	CDS	13131496	13131757	.	+	0	Parent=Os10t0393800-01
Chr10	irgsp1_rep	CDS	13131836	13132057	.	+	2	Parent=Os10t0393800-01
Chr10	irgsp1_rep	CDS	13132226	13132377	.	+	2	Parent=Os10t0393800-01
Chr10	irgsp1_rep	CDS	13132555	13133124	.	+	0	Parent=Os10t0393800-01
Chr10	irgsp1_rep	three_prime_UTR	13133125	13133327	.	+	.	Parent=Os10t0393800-01
Chr10	irgsp1_rep	mRNA	13131586	13133027	.	-	.	ID=Os10t0393900-00;Name=Os10t0393900-00;Locus_id=Os10g0393900;Note=Hypothetical protein.;Transcript_evidence=tplb0048c08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0393900-00
Chr10	irgsp1_rep	five_prime_UTR	13133026	13133027	.	-	.	Parent=Os10t0393900-00
Chr10	irgsp1_rep	CDS	13132528	13133025	.	-	0	Parent=Os10t0393900-00
Chr10	irgsp1_rep	three_prime_UTR	13132432	13132527	.	-	.	Parent=Os10t0393900-00
Chr10	irgsp1_rep	three_prime_UTR	13131586	13131996	.	-	.	Parent=Os10t0393900-00
Chr10	irgsp1_rep	mRNA	13142398	13144630	.	+	.	ID=Os10t0394000-01;Name=Os10t0394000-01;Locus_id=Os10g0394000;CGSNL Gene Symbol=GELP106;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 106;Oryzabase Gene Symbol Synonym(s)=OsGELP106;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 106;Note=Similar to GDSL-like Lipase/Acylhydrolase family protein%2C expressed.;Transcript_evidence=AK110763 (DDBJ%2C Best hit);ORF_evidence=Q7G307 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=002-170-H11;Oryzabase=11056;TENOR=Os10t0394000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	13142398	13142692	.	+	0	Parent=Os10t0394000-01
Chr10	irgsp1_rep	CDS	13142779	13142994	.	+	2	Parent=Os10t0394000-01
Chr10	irgsp1_rep	CDS	13143078	13143226	.	+	2	Parent=Os10t0394000-01
Chr10	irgsp1_rep	CDS	13143307	13143604	.	+	0	Parent=Os10t0394000-01
Chr10	irgsp1_rep	CDS	13144127	13144185	.	+	2	Parent=Os10t0394000-01
Chr10	irgsp1_rep	three_prime_UTR	13144186	13144630	.	+	.	Parent=Os10t0394000-01
Chr10	irgsp1_rep	mRNA	13149002	13154101	.	-	.	ID=Os10t0394100-01;Name=Os10t0394100-01;Locus_id=Os10g0394100;Note=Metallophosphoesterase domain containing protein.;Transcript_evidence=AK066208 (DDBJ%2C Best hit);ORF_evidence=B9RFE2 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Metallophosphoesterase domain (IPR004843);NIAS_FLcDNA=J013058D12;Expression=AK066208;TENOR=Os10t0394100-01;KEGG=Os10t0394100-01
Chr10	irgsp1_rep	five_prime_UTR	13153991	13154101	.	-	.	Parent=Os10t0394100-01
Chr10	irgsp1_rep	CDS	13153720	13153990	.	-	0	Parent=Os10t0394100-01
Chr10	irgsp1_rep	CDS	13152759	13152862	.	-	2	Parent=Os10t0394100-01
Chr10	irgsp1_rep	CDS	13152324	13152437	.	-	0	Parent=Os10t0394100-01
Chr10	irgsp1_rep	CDS	13152017	13152232	.	-	0	Parent=Os10t0394100-01
Chr10	irgsp1_rep	CDS	13151661	13151796	.	-	0	Parent=Os10t0394100-01
Chr10	irgsp1_rep	CDS	13151223	13151314	.	-	2	Parent=Os10t0394100-01
Chr10	irgsp1_rep	three_prime_UTR	13151117	13151222	.	-	.	Parent=Os10t0394100-01
Chr10	irgsp1_rep	three_prime_UTR	13150905	13150996	.	-	.	Parent=Os10t0394100-01
Chr10	irgsp1_rep	three_prime_UTR	13150755	13150824	.	-	.	Parent=Os10t0394100-01
Chr10	irgsp1_rep	three_prime_UTR	13150282	13150385	.	-	.	Parent=Os10t0394100-01
Chr10	irgsp1_rep	three_prime_UTR	13149948	13150088	.	-	.	Parent=Os10t0394100-01
Chr10	irgsp1_rep	three_prime_UTR	13149002	13149428	.	-	.	Parent=Os10t0394100-01
Chr10	irgsp1_rep	mRNA	13161347	13163933	.	+	.	ID=Os10t0394200-01;Name=Os10t0394200-01;Locus_id=Os10g0394200;Oryzabase Gene Symbol Synonym(s)=OsSub60%2C SUB60;Oryzabase Gene Name Synonym(s)=Subtilisin 60%2C SUBTILISIN 60;Note=Similar to subtilase family protein.;Transcript_evidence=AK241955 (DDBJ%2C Best hit);ORF_evidence=NP_565330.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C Ser-active site (IPR023828);NIAS_FLcDNA=J075092D09;Oryzabase=20144;TENOR=Os10t0394200-01;KEGG=Os10t0394200-01
Chr10	irgsp1_rep	five_prime_UTR	13161347	13161347	.	+	.	Parent=Os10t0394200-01
Chr10	irgsp1_rep	CDS	13161348	13162053	.	+	0	Parent=Os10t0394200-01
Chr10	irgsp1_rep	CDS	13162915	13163576	.	+	2	Parent=Os10t0394200-01
Chr10	irgsp1_rep	three_prime_UTR	13163577	13163933	.	+	.	Parent=Os10t0394200-01
Chr10	irgsp1_rep	mRNA	13171237	13183557	.	+	.	ID=Os10t0394400-01;Name=Os10t0394400-01;Locus_id=Os10g0394400;Note=Disease resistance protein domain containing protein.;Transcript_evidence=AK100807 (DDBJ%2C Best hit);ORF_evidence=Q8LSS5 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J023121L16;TENOR=Os10t0394400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	13171237	13172542	.	+	.	Parent=Os10t0394400-01
Chr10	irgsp1_rep	CDS	13172543	13173598	.	+	0	Parent=Os10t0394400-01
Chr10	irgsp1_rep	CDS	13180917	13181120	.	+	0	Parent=Os10t0394400-01
Chr10	irgsp1_rep	three_prime_UTR	13181121	13183059	.	+	.	Parent=Os10t0394400-01
Chr10	irgsp1_rep	three_prime_UTR	13183199	13183557	.	+	.	Parent=Os10t0394400-01
Chr10	irgsp1_rep	mRNA	13171302	13171725	.	+	.	ID=Os10t0394400-02;Name=Os10t0394400-02;Locus_id=Os10g0394400;Note=Non-protein coding transcript.;Transcript_evidence=AK062938 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-109-B05;TENOR=Os10t0394400-02
Chr10	irgsp1_rep	exon	13171302	13171725	.	+	.	Parent=Os10t0394400-02
Chr10	irgsp1_rep	mRNA	13186553	13187289	.	-	.	ID=Os10t0394700-01;Name=Os10t0394700-01;Locus_id=Os10g0394700;Note=Hypothetical conserved gene.;Transcript_evidence=AK058488 (DDBJ%2C Best hit);ORF_evidence=B9G5K6 (UniProt);NIAS_FLcDNA=001-016-D11;Expression=AK058488;TENOR=Os10t0394700-01;KEGG=Os10t0394700-01
Chr10	irgsp1_rep	five_prime_UTR	13187202	13187289	.	-	.	Parent=Os10t0394700-01
Chr10	irgsp1_rep	CDS	13186980	13187201	.	-	0	Parent=Os10t0394700-01
Chr10	irgsp1_rep	three_prime_UTR	13186931	13186979	.	-	.	Parent=Os10t0394700-01
Chr10	irgsp1_rep	three_prime_UTR	13186553	13186839	.	-	.	Parent=Os10t0394700-01
Chr10	irgsp1_rep	mRNA	13219950	13226081	.	-	.	ID=Os10t0395000-01;Name=Os10t0395000-01;Locus_id=Os10g0395000;CGSNL Gene Symbol=RLCK298;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 298;Oryzabase Gene Symbol Synonym(s)=OsRLCK298%2C PTK17%2C OsPTK17;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 298%2C Protein Tyrosine Kinase 17;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK121848 (DDBJ%2C Best hit);ORF_evidence=C6ZRQ0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J033101K14;Oryzabase=18974;Expression=AK121848;TENOR=Os10t0395000-01;KEGG=Os10t0395000-01
Chr10	irgsp1_rep	five_prime_UTR	13226064	13226081	.	-	.	Parent=Os10t0395000-01
Chr10	irgsp1_rep	CDS	13225650	13226063	.	-	0	Parent=Os10t0395000-01
Chr10	irgsp1_rep	CDS	13223275	13223410	.	-	0	Parent=Os10t0395000-01
Chr10	irgsp1_rep	CDS	13221209	13221345	.	-	2	Parent=Os10t0395000-01
Chr10	irgsp1_rep	CDS	13220693	13220816	.	-	0	Parent=Os10t0395000-01
Chr10	irgsp1_rep	CDS	13220170	13220528	.	-	2	Parent=Os10t0395000-01
Chr10	irgsp1_rep	three_prime_UTR	13219950	13220169	.	-	.	Parent=Os10t0395000-01
Chr10	irgsp1_rep	mRNA	13231204	13237841	.	-	.	ID=Os10t0395100-01;Name=Os10t0395100-01;Locus_id=Os10g0395100;Note=Dil domain domain containing protein.;Transcript_evidence=AK119317 (DDBJ%2C Best hit);ORF_evidence=NP_195046.3 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Dilute (IPR002710),Dil domain (IPR018444);NIAS_FLcDNA=001-130-H06;Expression=AK119317;TENOR=Os10t0395100-01;KEGG=Os10t0395100-01
Chr10	irgsp1_rep	five_prime_UTR	13237841	13237841	.	-	.	Parent=Os10t0395100-01
Chr10	irgsp1_rep	CDS	13237751	13237840	.	-	0	Parent=Os10t0395100-01
Chr10	irgsp1_rep	CDS	13237614	13237658	.	-	0	Parent=Os10t0395100-01
Chr10	irgsp1_rep	CDS	13237455	13237538	.	-	0	Parent=Os10t0395100-01
Chr10	irgsp1_rep	CDS	13234446	13234616	.	-	0	Parent=Os10t0395100-01
Chr10	irgsp1_rep	CDS	13234218	13234367	.	-	0	Parent=Os10t0395100-01
Chr10	irgsp1_rep	CDS	13233588	13233764	.	-	0	Parent=Os10t0395100-01
Chr10	irgsp1_rep	CDS	13233333	13233470	.	-	0	Parent=Os10t0395100-01
Chr10	irgsp1_rep	CDS	13232508	13232578	.	-	0	Parent=Os10t0395100-01
Chr10	irgsp1_rep	CDS	13232318	13232417	.	-	1	Parent=Os10t0395100-01
Chr10	irgsp1_rep	CDS	13232190	13232246	.	-	0	Parent=Os10t0395100-01
Chr10	irgsp1_rep	CDS	13232033	13232089	.	-	0	Parent=Os10t0395100-01
Chr10	irgsp1_rep	CDS	13231841	13231922	.	-	0	Parent=Os10t0395100-01
Chr10	irgsp1_rep	CDS	13231671	13231752	.	-	2	Parent=Os10t0395100-01
Chr10	irgsp1_rep	CDS	13231434	13231575	.	-	1	Parent=Os10t0395100-01
Chr10	irgsp1_rep	three_prime_UTR	13231204	13231433	.	-	.	Parent=Os10t0395100-01
Chr10	irgsp1_rep	mRNA	13244510	13255129	.	-	.	ID=Os10t0395150-00;Name=Os10t0395150-00;Locus_id=Os10g0395150;Note=Similar to predicted protein.;Transcript_evidence=CT835733 (DDBJ%2C Best hit);ORF_evidence=NP_195046.3 (RefSeq);GO=Cellular Component: myosin complex (GO:0016459),Molecular Function: motor activity (GO:0003774),Molecular Function: ATP binding (GO:0005524);InterPro=Myosin head%2C motor domain (IPR001609);TENOR=Os10t0395150-00;KEGG=Os10t0395150-00
Chr10	irgsp1_rep	five_prime_UTR	13254682	13255129	.	-	.	Parent=Os10t0395150-00
Chr10	irgsp1_rep	CDS	13254481	13254681	.	-	0	Parent=Os10t0395150-00
Chr10	irgsp1_rep	CDS	13249513	13249658	.	-	0	Parent=Os10t0395150-00
Chr10	irgsp1_rep	CDS	13249286	13249442	.	-	1	Parent=Os10t0395150-00
Chr10	irgsp1_rep	CDS	13248919	13248977	.	-	0	Parent=Os10t0395150-00
Chr10	irgsp1_rep	CDS	13248407	13248563	.	-	1	Parent=Os10t0395150-00
Chr10	irgsp1_rep	CDS	13247560	13247709	.	-	0	Parent=Os10t0395150-00
Chr10	irgsp1_rep	CDS	13247327	13247463	.	-	0	Parent=Os10t0395150-00
Chr10	irgsp1_rep	CDS	13246544	13246690	.	-	1	Parent=Os10t0395150-00
Chr10	irgsp1_rep	CDS	13246375	13246476	.	-	1	Parent=Os10t0395150-00
Chr10	irgsp1_rep	CDS	13245869	13245926	.	-	1	Parent=Os10t0395150-00
Chr10	irgsp1_rep	CDS	13245677	13245778	.	-	0	Parent=Os10t0395150-00
Chr10	irgsp1_rep	CDS	13244912	13244949	.	-	0	Parent=Os10t0395150-00
Chr10	irgsp1_rep	CDS	13244655	13244838	.	-	1	Parent=Os10t0395150-00
Chr10	irgsp1_rep	three_prime_UTR	13244510	13244654	.	-	.	Parent=Os10t0395150-00
Chr10	irgsp1_rep	mRNA	13258240	13259300	.	-	.	ID=Os10t0395200-01;Name=Os10t0395200-01;Locus_id=Os10g0395200;Note=Conserved hypothetical protein.;Transcript_evidence=AK067046 (DDBJ%2C Best hit);ORF_evidence=Q8L574 (UniProt);NIAS_FLcDNA=J013091L24;TENOR=Os10t0395200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	13259214	13259300	.	-	.	Parent=Os10t0395200-01
Chr10	irgsp1_rep	five_prime_UTR	13258888	13259033	.	-	.	Parent=Os10t0395200-01
Chr10	irgsp1_rep	CDS	13258678	13258887	.	-	0	Parent=Os10t0395200-01
Chr10	irgsp1_rep	three_prime_UTR	13258240	13258677	.	-	.	Parent=Os10t0395200-01
Chr10	irgsp1_rep	mRNA	13263902	13265563	.	-	.	ID=Os10t0395400-00;Name=Os10t0395400-00;Locus_id=Os10g0395400;CGSNL Gene Symbol=GSTU34;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 34;Oryzabase Gene Symbol Synonym(s)=OsGSTU34;Note=Thioredoxin fold domain containing protein.;Transcript_evidence=BT087550 (DDBJ);ORF_evidence=Q5GAR4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);Oryzabase=9551;TENOR=Os10t0395400-00;KEGG=Os10t0395400-00
Chr10	irgsp1_rep	CDS	13265216	13265563	.	-	0	Parent=Os10t0395400-00
Chr10	irgsp1_rep	CDS	13263907	13264293	.	-	0	Parent=Os10t0395400-00
Chr10	irgsp1_rep	three_prime_UTR	13263902	13263906	.	-	.	Parent=Os10t0395400-00
Chr10	irgsp1_rep	mRNA	13265745	13269460	.	+	.	ID=Os10t0395500-01;Name=Os10t0395500-01;Locus_id=Os10g0395500;Note=Proteasome assembly chaperone 3 domain containing protein.;Transcript_evidence=AK242314 (DDBJ%2C Best hit);ORF_evidence=Q8L401 (UniProt);InterPro=Proteasome assembly chaperone 3 (IPR018788);NIAS_FLcDNA=J075195E23;TENOR=Os10t0395500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	13265745	13265768	.	+	.	Parent=Os10t0395500-01
Chr10	irgsp1_rep	CDS	13265769	13265885	.	+	0	Parent=Os10t0395500-01
Chr10	irgsp1_rep	CDS	13267212	13267289	.	+	0	Parent=Os10t0395500-01
Chr10	irgsp1_rep	CDS	13267630	13267677	.	+	0	Parent=Os10t0395500-01
Chr10	irgsp1_rep	CDS	13267766	13267812	.	+	0	Parent=Os10t0395500-01
Chr10	irgsp1_rep	CDS	13268241	13268307	.	+	1	Parent=Os10t0395500-01
Chr10	irgsp1_rep	CDS	13268385	13268428	.	+	0	Parent=Os10t0395500-01
Chr10	irgsp1_rep	CDS	13268845	13268902	.	+	1	Parent=Os10t0395500-01
Chr10	irgsp1_rep	CDS	13269099	13269149	.	+	0	Parent=Os10t0395500-01
Chr10	irgsp1_rep	three_prime_UTR	13269150	13269460	.	+	.	Parent=Os10t0395500-01
Chr10	irgsp1_rep	mRNA	13284246	13285667	.	-	.	ID=Os10t0396100-01;Name=Os10t0396100-01;Locus_id=Os10g0396100;Oryzabase Gene Symbol Synonym(s)=OsFbox551%2C Os_F0073;Oryzabase Gene Name Synonym(s)=F-box protein 551;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK064116 (DDBJ%2C Best hit);ORF_evidence=A2Z6Y4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated domain%2C type 3 (IPR013187),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-102-A11;Oryzabase=17320;Expression=AK064116;TENOR=Os10t0396100-01;KEGG=Os10t0396100-01
Chr10	irgsp1_rep	five_prime_UTR	13285570	13285667	.	-	.	Parent=Os10t0396100-01
Chr10	irgsp1_rep	CDS	13284292	13285569	.	-	0	Parent=Os10t0396100-01
Chr10	irgsp1_rep	three_prime_UTR	13284246	13284291	.	-	.	Parent=Os10t0396100-01
Chr10	irgsp1_rep	mRNA	13289659	13292217	.	-	.	ID=Os10t0396300-01;Name=Os10t0396300-01;Locus_id=Os10g0396300;Note=Similar to MOB1.;Transcript_evidence=AK120220 (DDBJ%2C Best hit);ORF_evidence=A6N0A7 (UniProt);InterPro=Mob1/phocein (IPR005301);NIAS_FLcDNA=J013041G09;Expression=AK120220;TENOR=Os10t0396300-01;KEGG=Os10t0396300-01
Chr10	irgsp1_rep	five_prime_UTR	13291983	13292217	.	-	.	Parent=Os10t0396300-01
Chr10	irgsp1_rep	CDS	13291957	13291982	.	-	0	Parent=Os10t0396300-01
Chr10	irgsp1_rep	CDS	13291360	13291408	.	-	1	Parent=Os10t0396300-01
Chr10	irgsp1_rep	CDS	13290955	13291063	.	-	0	Parent=Os10t0396300-01
Chr10	irgsp1_rep	CDS	13290768	13290861	.	-	2	Parent=Os10t0396300-01
Chr10	irgsp1_rep	CDS	13290554	13290687	.	-	1	Parent=Os10t0396300-01
Chr10	irgsp1_rep	CDS	13290276	13290439	.	-	2	Parent=Os10t0396300-01
Chr10	irgsp1_rep	CDS	13289895	13289969	.	-	0	Parent=Os10t0396300-01
Chr10	irgsp1_rep	three_prime_UTR	13289659	13289894	.	-	.	Parent=Os10t0396300-01
Chr10	irgsp1_rep	mRNA	13290280	13291065	.	+	.	ID=Os10t0396350-00;Name=Os10t0396350-00;Locus_id=Os10g0396350;Note=Non-protein coding transcript.;Transcript_evidence=BT016208 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0396350-00
Chr10	irgsp1_rep	exon	13290280	13290435	.	+	.	Parent=Os10t0396350-00
Chr10	irgsp1_rep	exon	13290551	13290677	.	+	.	Parent=Os10t0396350-00
Chr10	irgsp1_rep	exon	13290755	13290844	.	+	.	Parent=Os10t0396350-00
Chr10	irgsp1_rep	exon	13290940	13291065	.	+	.	Parent=Os10t0396350-00
Chr10	irgsp1_rep	mRNA	13294380	13300007	.	-	.	ID=Os10t0396400-01;Name=Os10t0396400-01;Locus_id=Os10g0396400;Oryzabase Gene Symbol Synonym(s)=OsFbox552%2C Os_F0216;Oryzabase Gene Name Synonym(s)=F-box protein 552;Note=Leucine-rich repeat%2C cysteine-containing containing protein.;Transcript_evidence=AK070796 (DDBJ%2C Best hit);ORF_evidence=Q9SMY8 (UniProt);InterPro=Leucine-rich repeat%2C cysteine-containing subtype (IPR006553);NIAS_FLcDNA=J023067J12;Oryzabase=17321;Expression=AK070796;TENOR=Os10t0396400-01;KEGG=Os10t0396400-01
Chr10	irgsp1_rep	CDS	13299711	13300007	.	-	0	Parent=Os10t0396400-01
Chr10	irgsp1_rep	CDS	13299497	13299595	.	-	0	Parent=Os10t0396400-01
Chr10	irgsp1_rep	CDS	13299328	13299416	.	-	0	Parent=Os10t0396400-01
Chr10	irgsp1_rep	CDS	13299127	13299226	.	-	1	Parent=Os10t0396400-01
Chr10	irgsp1_rep	CDS	13298850	13299020	.	-	0	Parent=Os10t0396400-01
Chr10	irgsp1_rep	CDS	13298435	13298587	.	-	0	Parent=Os10t0396400-01
Chr10	irgsp1_rep	CDS	13297434	13297594	.	-	0	Parent=Os10t0396400-01
Chr10	irgsp1_rep	CDS	13297164	13297362	.	-	1	Parent=Os10t0396400-01
Chr10	irgsp1_rep	CDS	13296352	13296815	.	-	0	Parent=Os10t0396400-01
Chr10	irgsp1_rep	CDS	13296206	13296269	.	-	1	Parent=Os10t0396400-01
Chr10	irgsp1_rep	CDS	13294970	13295059	.	-	0	Parent=Os10t0396400-01
Chr10	irgsp1_rep	CDS	13294799	13294876	.	-	0	Parent=Os10t0396400-01
Chr10	irgsp1_rep	three_prime_UTR	13294380	13294798	.	-	.	Parent=Os10t0396400-01
Chr10	irgsp1_rep	mRNA	13294411	13299369	.	-	.	ID=Os10t0396400-02;Name=Os10t0396400-02;Locus_id=Os10g0396400;Oryzabase Gene Symbol Synonym(s)=OsFbox552%2C Os_F0216;Oryzabase Gene Name Synonym(s)=F-box protein 552;Note=Hypothetical conserved gene.;Transcript_evidence=AK072011 (DDBJ%2C Best hit);ORF_evidence=Q338L7 (UniProt);InterPro=Leucine-rich repeat%2C cysteine-containing subtype (IPR006553);NIAS_FLcDNA=J013102A05;Oryzabase=17321;Expression=AK072011;TENOR=Os10t0396400-02;KEGG=Os10t0396400-02
Chr10	irgsp1_rep	five_prime_UTR	13299369	13299369	.	-	.	Parent=Os10t0396400-02
Chr10	irgsp1_rep	CDS	13299328	13299368	.	-	0	Parent=Os10t0396400-02
Chr10	irgsp1_rep	CDS	13299127	13299226	.	-	1	Parent=Os10t0396400-02
Chr10	irgsp1_rep	CDS	13298850	13299020	.	-	0	Parent=Os10t0396400-02
Chr10	irgsp1_rep	CDS	13298435	13298587	.	-	0	Parent=Os10t0396400-02
Chr10	irgsp1_rep	CDS	13297434	13297594	.	-	0	Parent=Os10t0396400-02
Chr10	irgsp1_rep	CDS	13297164	13297362	.	-	1	Parent=Os10t0396400-02
Chr10	irgsp1_rep	CDS	13296352	13296815	.	-	0	Parent=Os10t0396400-02
Chr10	irgsp1_rep	CDS	13296206	13296269	.	-	1	Parent=Os10t0396400-02
Chr10	irgsp1_rep	CDS	13294970	13295059	.	-	0	Parent=Os10t0396400-02
Chr10	irgsp1_rep	CDS	13294799	13294876	.	-	0	Parent=Os10t0396400-02
Chr10	irgsp1_rep	three_prime_UTR	13294411	13294798	.	-	.	Parent=Os10t0396400-02
Chr10	irgsp1_rep	mRNA	13300201	13303558	.	-	.	ID=Os10t0396666-00;Name=Os10t0396666-00;Locus_id=Os10g0396666;Oryzabase Gene Symbol Synonym(s)=OsFbox552%2C Os_F0216;Oryzabase Gene Name Synonym(s)=F-box protein 552;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G5L4 (UniProt);Oryzabase=17321;TENOR=Os10t0396666-00;KEGG=Os10t0396666-00
Chr10	irgsp1_rep	CDS	13303152	13303558	.	-	0	Parent=Os10t0396666-00
Chr10	irgsp1_rep	CDS	13301321	13301582	.	-	1	Parent=Os10t0396666-00
Chr10	irgsp1_rep	CDS	13300201	13300266	.	-	0	Parent=Os10t0396666-00
Chr10	irgsp1_rep	mRNA	13326832	13327941	.	+	.	ID=Os10t0396932-00;Name=Os10t0396932-00;Locus_id=Os10g0396932;Note=Hypothetical gene.;Transcript_evidence=CT837564 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;TENOR=Os10t0396932-00;KEGG=Os10t0396932-00
Chr10	irgsp1_rep	five_prime_UTR	13326832	13327173	.	+	.	Parent=Os10t0396932-00
Chr10	irgsp1_rep	five_prime_UTR	13327535	13327596	.	+	.	Parent=Os10t0396932-00
Chr10	irgsp1_rep	CDS	13327597	13327869	.	+	0	Parent=Os10t0396932-00
Chr10	irgsp1_rep	three_prime_UTR	13327870	13327941	.	+	.	Parent=Os10t0396932-00
Chr10	irgsp1_rep	mRNA	13327550	13328284	.	-	.	ID=Os10t0397066-00;Name=Os10t0397066-00;Locus_id=Os10g0397066;Note=Similar to Mitochondrial GTPase.;Transcript_evidence=EU971900 (DDBJ);ORF_evidence=E5GCK2 (UniProt);TENOR=Os10t0397066-00
Chr10	irgsp1_rep	CDS	13328150	13328284	.	-	0	Parent=Os10t0397066-00
Chr10	irgsp1_rep	CDS	13327554	13327661	.	-	0	Parent=Os10t0397066-00
Chr10	irgsp1_rep	three_prime_UTR	13327550	13327553	.	-	.	Parent=Os10t0397066-00
Chr10	irgsp1_rep	mRNA	13353103	13357371	.	-	.	ID=Os10t0397200-01;Name=Os10t0397200-01;Locus_id=Os10g0397200;Note=Transcription initiation factor TFIIE%2C beta subunit domain containing protein.;Transcript_evidence=AK102029 (DDBJ%2C Best hit),AK064927 (DDBJ%2C Best hit);ORF_evidence=NP_193766.1 (RefSeq);GO=Biological Process: transcription initiation from RNA polymerase II promoter (GO:0006367),Cellular Component: transcription factor TFIIE complex (GO:0005673);InterPro=Transcription factor TFIIE beta subunit%2C DNA-binding domain (IPR003166),Transcription initiation factor TFIIE%2C beta subunit (IPR016656);NIAS_FLcDNA=J033080P17,J013000N20;TENOR=Os10t0397200-01
Chr10	irgsp1_rep	five_prime_UTR	13357137	13357371	.	-	.	Parent=Os10t0397200-01
Chr10	irgsp1_rep	CDS	13355960	13356211	.	-	0	Parent=Os10t0397200-01
Chr10	irgsp1_rep	CDS	13355041	13355172	.	-	0	Parent=Os10t0397200-01
Chr10	irgsp1_rep	CDS	13354505	13354621	.	-	0	Parent=Os10t0397200-01
Chr10	irgsp1_rep	CDS	13353302	13353640	.	-	0	Parent=Os10t0397200-01
Chr10	irgsp1_rep	three_prime_UTR	13353103	13353301	.	-	.	Parent=Os10t0397200-01
Chr10	irgsp1_rep	mRNA	13353118	13356120	.	-	.	ID=Os10t0397200-02;Name=Os10t0397200-02;Locus_id=Os10g0397200;Note=Similar to predicted protein.;Transcript_evidence=AK061789 (DDBJ%2C Best hit);ORF_evidence=NP_193766.1 (RefSeq);GO=Biological Process: transcription initiation from RNA polymerase II promoter (GO:0006367),Cellular Component: transcription factor TFIIE complex (GO:0005673);InterPro=Transcription factor TFIIE beta subunit%2C DNA-binding domain (IPR003166),Transcription initiation factor TFIIE%2C beta subunit (IPR016656);NIAS_FLcDNA=001-039-F01;Expression=AK061789;TENOR=Os10t0397200-02;KEGG=Os10t0397200-02
Chr10	irgsp1_rep	five_prime_UTR	13356119	13356120	.	-	.	Parent=Os10t0397200-02
Chr10	irgsp1_rep	CDS	13355960	13356118	.	-	0	Parent=Os10t0397200-02
Chr10	irgsp1_rep	CDS	13355041	13355172	.	-	0	Parent=Os10t0397200-02
Chr10	irgsp1_rep	CDS	13354505	13354621	.	-	0	Parent=Os10t0397200-02
Chr10	irgsp1_rep	CDS	13353302	13353640	.	-	0	Parent=Os10t0397200-02
Chr10	irgsp1_rep	three_prime_UTR	13353118	13353301	.	-	.	Parent=Os10t0397200-02
Chr10	irgsp1_rep	mRNA	13359632	13363225	.	-	.	ID=Os10t0397400-01;Name=Os10t0397400-01;Locus_id=Os10g0397400;RAP-DB Gene Symbol Synonym(s)=BRD2%2C brd2%2C OsBRD2%2C Dim/dwf1%2C Dim%2C dwf1;RAP-DB Gene Name Synonym(s)=BRASSINOSTEROID DEFICIENT DWARF 2%2C brassinosteroid (BR)-deficient dwarf-2%2C BR-deficient dwarf2%2C brassinosteroid-deficient dwarf2%2C rice homolog of Arabidopsis thaliana DIMINUTO/DWARF1%2C Dim/dwf1 protein%2C DIMINUTO%2C DWARF1%2C Putative Cell elongation protein DIMINUTO%2C Cell elongation protein Dwarf1;CGSNL Gene Symbol=BRD2;CGSNL Gene Name=BRASSINOSTEROID DEFICIENT DWARF 2;Oryzabase Gene Symbol Synonym(s)=brd2%2C OsBRD2%2C Dim/dwf1%2C Dim%2C dwf1%2C OsDWF1%2C DWF1%2C LTBSG1%2C OsLTBSG1%2C LHDD10%2C OsLHDD10%2C OsD-LDH3%2C D-LDH3;Oryzabase Gene Name Synonym(s)=brassinosteroid (BR)-deficient dwarf-2%2C BR-deficient dwarf2%2C brassinosteroid-deficient dwarf2%2C rice homolog of Arabidopsis thaliana DIMINUTO/DWARF1%2C Dim/dwf1 protein%2C DIMINUTO%2C DWARF1%2C Putative Cell elongation protein DIMINUTO%2C Cell elongation protein Dwarf1%2C Dimunito/Dwarf1%2C longer top branch and shorter grain 1%2C D-lactate dehydrogenase 3;Note=Dim/dwf1 protein%2C Cell elongation protein DIMINUTO/Dwarf1%2C Brassinosteroid (BR) biosynthesis;Transcript_evidence=Inferred from literature;ORF_evidence=Q8RU48;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=FAD-binding%2C type 2 (IPR016166),FAD linked oxidase%2C N-terminal (IPR006094),CO dehydrogenase flavoprotein-like%2C FAD-binding%2C subdomain 2 (IPR016169);NIAS_FLcDNA=001-026-C04;Manual Curation=December 8%2C 2015;Literature_PMID=15994910,18980660;Oryzabase=6017;Expression=AK111949;TENOR=Os10t0397400-01;KEGG=Os10t0397400-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	13362930	13363225	.	-	.	Parent=Os10t0397400-01
Chr10	irgsp1_rep	five_prime_UTR	13361875	13361889	.	-	.	Parent=Os10t0397400-01
Chr10	irgsp1_rep	CDS	13360633	13361874	.	-	0	Parent=Os10t0397400-01
Chr10	irgsp1_rep	CDS	13359935	13360378	.	-	0	Parent=Os10t0397400-01
Chr10	irgsp1_rep	three_prime_UTR	13359632	13359934	.	-	.	Parent=Os10t0397400-01
Chr10	irgsp1_rep	mRNA	13359545	13362322	.	-	.	ID=Os10t0397400-02;Name=Os10t0397400-02;Locus_id=Os10g0397400;RAP-DB Gene Symbol Synonym(s)=BRD2%2C LTBSG1%2C LHDD10;RAP-DB Gene Name Synonym(s)=brassinosteroid deficient dwarf 2%2C longer top branch and shorter grain 1;CGSNL Gene Symbol=BRD2;CGSNL Gene Name=BRASSINOSTEROID DEFICIENT DWARF 2;Oryzabase Gene Symbol Synonym(s)=brd2%2C OsBRD2%2C Dim/dwf1%2C Dim%2C dwf1%2C OsDWF1%2C DWF1%2C LTBSG1%2C OsLTBSG1%2C LHDD10%2C OsLHDD10;Oryzabase Gene Name Synonym(s)=brassinosteroid (BR)-deficient dwarf-2%2C BR-deficient dwarf2%2C brassinosteroid-deficient dwarf2%2C rice homolog of Arabidopsis thaliana DIMINUTO/DWARF1%2C Dim/dwf1 protein%2C DIMINUTO%2C DWARF1%2C Putative Cell elongation protein DIMINUTO%2C Cell elongation protein Dwarf1%2C Dimunito/Dwarf1%2C longer top branch and shorter grain 1;Note=FAD-linked oxidoreductase protein%2C Brassinosteroid (BR) biosynthesis%2C Regulation of panicle and grain development%2C Regulation of heading date and chlorophyll biosynthesis;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: FAD binding (GO:0071949);InterPro=FAD-binding%2C type PCMH-like superfamily (IPR036318),FAD-binding%2C type PCMH%2C subdomain 2 (IPR016169),FAD-binding domain%2C PCMH-type (IPR016166),FAD linked oxidase%2C N-terminal (IPR006094);Manual Curation=August 23%2C 2019;Literature_PMID=29891831,26518431;Oryzabase=6017;Subcellular location=cellular_component (GO:0005575) [whole cell]
Chr10	irgsp1_rep	five_prime_UTR	13362144	13362322	.	-	.	Parent=Os10t0397400-02
Chr10	irgsp1_rep	CDS	13362075	13362143	.	-	0	Parent=Os10t0397400-02
Chr10	irgsp1_rep	CDS	13360633	13361889	.	-	0	Parent=Os10t0397400-02
Chr10	irgsp1_rep	CDS	13359935	13360378	.	-	0	Parent=Os10t0397400-02
Chr10	irgsp1_rep	three_prime_UTR	13359545	13359934	.	-	.	Parent=Os10t0397400-02
Chr10	irgsp1_rep	mRNA	13359940	13360955	.	+	.	ID=Os10t0397433-00;Name=Os10t0397433-00;Locus_id=Os10g0397433;Note=Hypothetical gene.;Transcript_evidence=BT019154 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0397433-00
Chr10	irgsp1_rep	five_prime_UTR	13359940	13360288	.	+	.	Parent=Os10t0397433-00
Chr10	irgsp1_rep	five_prime_UTR	13360690	13360704	.	+	.	Parent=Os10t0397433-00
Chr10	irgsp1_rep	CDS	13360705	13360955	.	+	0	Parent=Os10t0397433-00
Chr10	irgsp1_rep	mRNA	13375379	13376168	.	+	.	ID=Os10t0397500-00;Name=Os10t0397500-00;Locus_id=Os10g0397500;Note=Conserved hypothetical protein.;Transcript_evidence=AK360718 (DDBJ);ORF_evidence=Q8S5P9 (UniProt);TENOR=Os10t0397500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	13375379	13375629	.	+	0	Parent=Os10t0397500-00
Chr10	irgsp1_rep	CDS	13375804	13376014	.	+	1	Parent=Os10t0397500-00
Chr10	irgsp1_rep	three_prime_UTR	13376015	13376168	.	+	.	Parent=Os10t0397500-00
Chr10	irgsp1_rep	mRNA	13387600	13388592	.	-	.	ID=Os10t0397800-00;Name=Os10t0397800-00;Locus_id=Os10g0397800;Note=Mitochondrial carrier protein family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001149800.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial inner membrane (GO:0005743),Molecular Function: binding (GO:0005488);InterPro=Mitochondrial carrier protein (IPR002067),Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);TENOR=Os10t0397800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	13387600	13388592	.	-	0	Parent=Os10t0397800-00
Chr10	irgsp1_rep	mRNA	13392913	13402342	.	+	.	ID=Os10t0397900-00;Name=Os10t0397900-00;Locus_id=Os10g0397900;CGSNL Gene Symbol=HAP2I;CGSNL Gene Name=HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX;Oryzabase Gene Symbol Synonym(s)=OsHAP2I%2C NF-YA%2C CBF-B%2C NF-YA8%2C OsNF-YA8%2C OsEnS-136%2C NFYA8;Oryzabase Gene Name Synonym(s)=NUCLEAR FACTOR-Y subunit A8%2C NUCLEAR FACTOR-Y subunit NF-YA8%2C NF-YA transcription factor 8%2C endosperm-specific gene 136%2C NF-YA subunit 8%2C NF-YA family 8;Note=CCAAT-binding transcription factor%2C subunit B domain containing protein.;Transcript_evidence=EU847005 (DDBJ%2C Best hit);ORF_evidence=NP_001064536.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=CCAAT-binding transcription factor%2C subunit B (IPR001289);Oryzabase=8481;TENOR=Os10t0397900-00
Chr10	irgsp1_rep	five_prime_UTR	13392913	13392960	.	+	.	Parent=Os10t0397900-00
Chr10	irgsp1_rep	five_prime_UTR	13394015	13394043	.	+	.	Parent=Os10t0397900-00
Chr10	irgsp1_rep	CDS	13394044	13394077	.	+	0	Parent=Os10t0397900-00
Chr10	irgsp1_rep	CDS	13394221	13394318	.	+	2	Parent=Os10t0397900-00
Chr10	irgsp1_rep	CDS	13401434	13401604	.	+	0	Parent=Os10t0397900-00
Chr10	irgsp1_rep	CDS	13401689	13401875	.	+	0	Parent=Os10t0397900-00
Chr10	irgsp1_rep	CDS	13401961	13401971	.	+	2	Parent=Os10t0397900-00
Chr10	irgsp1_rep	three_prime_UTR	13401972	13402342	.	+	.	Parent=Os10t0397900-00
Chr10	irgsp1_rep	mRNA	13402709	13403493	.	-	.	ID=Os10t0398100-01;Name=Os10t0398100-01;Locus_id=Os10g0398100;Note=Plant disease resistance response protein family protein.;Transcript_evidence=AK108922 (DDBJ%2C Best hit);ORF_evidence=A2Z6Z9 (UniProt);InterPro=Plant disease resistance response protein (IPR004265);NIAS_FLcDNA=002-152-H09;Expression=AK108922;TENOR=Os10t0398100-01;KEGG=Os10t0398100-01
Chr10	irgsp1_rep	five_prime_UTR	13403391	13403493	.	-	.	Parent=Os10t0398100-01
Chr10	irgsp1_rep	CDS	13402824	13403390	.	-	0	Parent=Os10t0398100-01
Chr10	irgsp1_rep	three_prime_UTR	13402709	13402823	.	-	.	Parent=Os10t0398100-01
Chr10	irgsp1_rep	mRNA	13402895	13406485	.	+	.	ID=Os10t0398350-00;Name=Os10t0398350-00;Locus_id=Os10g0398350;Note=Hypothetical protein.;Transcript_evidence=AK334779 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0398350-00
Chr10	irgsp1_rep	five_prime_UTR	13402895	13402895	.	+	.	Parent=Os10t0398350-00
Chr10	irgsp1_rep	CDS	13402896	13403229	.	+	0	Parent=Os10t0398350-00
Chr10	irgsp1_rep	CDS	13405243	13405319	.	+	2	Parent=Os10t0398350-00
Chr10	irgsp1_rep	three_prime_UTR	13405320	13405579	.	+	.	Parent=Os10t0398350-00
Chr10	irgsp1_rep	three_prime_UTR	13406306	13406485	.	+	.	Parent=Os10t0398350-00
Chr10	irgsp1_rep	mRNA	13422377	13423710	.	-	.	ID=Os10t0398600-01;Name=Os10t0398600-01;Locus_id=Os10g0398600;Note=Similar to cDNA clone:J013004F22%2C full insert sequence.;Transcript_evidence=AK243628 (DDBJ%2C Best hit);ORF_evidence=B7EP17 (UniProt);NIAS_FLcDNA=J100087B20;TENOR=Os10t0398600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	13422695	13423710	.	-	.	Parent=Os10t0398600-01
Chr10	irgsp1_rep	CDS	13422578	13422694	.	-	0	Parent=Os10t0398600-01
Chr10	irgsp1_rep	three_prime_UTR	13422377	13422577	.	-	.	Parent=Os10t0398600-01
Chr10	irgsp1_rep	mRNA	13438132	13444187	.	+	.	ID=Os10t0399100-00;Name=Os10t0399100-00;Locus_id=Os10g0399100;CGSNL Gene Symbol=CGS4;CGSNL Gene Name=CYSTATHIONINE GAMMA-SYNTHASE 4;Oryzabase Gene Symbol Synonym(s)=OsaCGS4%2C OsCGS4;Oryzabase Gene Name Synonym(s)=cystathionine gamma-synthase 4;Note=Similar to Cys/Met metabolism PLP-dependent enzyme family protein.;Transcript_evidence=BT017365 (DDBJ);ORF_evidence=Q338K0 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Cys/Met metabolism%2C pyridoxal phosphate-dependent enzyme (IPR000277),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);Oryzabase=22907;TENOR=Os10t0399100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	13438132	13439211	.	+	0	Parent=Os10t0399100-00
Chr10	irgsp1_rep	CDS	13439312	13439634	.	+	0	Parent=Os10t0399100-00
Chr10	irgsp1_rep	CDS	13444064	13444187	.	+	1	Parent=Os10t0399100-00
Chr10	irgsp1_rep	mRNA	13449222	13450950	.	-	.	ID=Os10t0399200-00;Name=Os10t0399200-00;Locus_id=Os10g0399200;CGSNL Gene Symbol=CGS1;CGSNL Gene Name=CYSTATHIONINE GAMMA-SYNTHASE 1;Oryzabase Gene Symbol Synonym(s)=OsaCGS1%2C OsCGS1;Oryzabase Gene Name Synonym(s)=cystathionine gamma-synthase 1;Note=Similar to Cys/Met metabolism PLP-dependent enzyme family protein.;Transcript_evidence=AK362180 (DDBJ);ORF_evidence=Q338K0 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Cys/Met metabolism%2C pyridoxal phosphate-dependent enzyme (IPR000277),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);Oryzabase=22904;TENOR=Os10t0399200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	13450333	13450950	.	-	0	Parent=Os10t0399200-00
Chr10	irgsp1_rep	CDS	13449888	13450241	.	-	0	Parent=Os10t0399200-00
Chr10	irgsp1_rep	CDS	13449468	13449790	.	-	0	Parent=Os10t0399200-00
Chr10	irgsp1_rep	CDS	13449222	13449345	.	-	1	Parent=Os10t0399200-00
Chr10	irgsp1_rep	mRNA	13467597	13469366	.	+	.	ID=Os10t0399700-00;Name=Os10t0399700-00;Locus_id=Os10g0399700;CGSNL Gene Symbol=CGS2;CGSNL Gene Name=CYSTATHIONINE GAMMA-SYNTHASE 2;Oryzabase Gene Symbol Synonym(s)=OsaCGS2%2C OsCGS2;Oryzabase Gene Name Synonym(s)=cystathionine gamma-synthase 2;Note=Similar to Cys/Met metabolism PLP-dependent enzyme family protein.;Transcript_evidence=AK362180 (DDBJ);ORF_evidence=Q338K0 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Cys/Met metabolism%2C pyridoxal phosphate-dependent enzyme (IPR000277),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);Oryzabase=22905;TENOR=Os10t0399700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	13467597	13468256	.	+	0	Parent=Os10t0399700-00
Chr10	irgsp1_rep	CDS	13468353	13468706	.	+	0	Parent=Os10t0399700-00
Chr10	irgsp1_rep	CDS	13468798	13469120	.	+	0	Parent=Os10t0399700-00
Chr10	irgsp1_rep	CDS	13469243	13469366	.	+	1	Parent=Os10t0399700-00
Chr10	irgsp1_rep	mRNA	13478227	13482415	.	-	.	ID=Os10t0399901-01;Name=Os10t0399901-01;Locus_id=Os10g0399901;Note=Conserved hypothetical protein.;Transcript_evidence=AK288214 (DDBJ%2C Best hit);ORF_evidence=NP_001176824.1 (RefSeq);NIAS_FLcDNA=J090010G11;TENOR=Os10t0399901-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	13482336	13482415	.	-	.	Parent=Os10t0399901-01
Chr10	irgsp1_rep	CDS	13482063	13482335	.	-	0	Parent=Os10t0399901-01
Chr10	irgsp1_rep	three_prime_UTR	13478227	13482062	.	-	.	Parent=Os10t0399901-01
Chr10	irgsp1_rep	mRNA	13492802	13496772	.	+	.	ID=Os10t0400100-01;Name=Os10t0400100-01;Locus_id=Os10g0400100;Note=Methionyl-tRNA synthetase%2C class Ia domain containing protein.;Transcript_evidence=AK067274 (DDBJ%2C Best hit);ORF_evidence=B8BGP6 (UniProt);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: methionyl-tRNA aminoacylation (GO:0006431),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: methionine-tRNA ligase activity (GO:0004825),Molecular Function: ATP binding (GO:0005524);InterPro=Aminoacyl-tRNA synthetase%2C class I%2C conserved site (IPR001412),Aminoacyl-tRNA synthetase%2C class 1a%2C anticodon-binding (IPR009080),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Methionyl-tRNA synthetase (IPR014758),Aminoacyl-tRNA synthetase%2C class I (M) (IPR015413),Methionyl-tRNA synthetase%2C type 1 (IPR023458);NIAS_FLcDNA=J013098H24;Expression=AK067274;TENOR=Os10t0400100-01;KEGG=Os10t0400100-01 (EC:6.1.1.10)
Chr10	irgsp1_rep	five_prime_UTR	13492802	13493005	.	+	.	Parent=Os10t0400100-01
Chr10	irgsp1_rep	CDS	13493006	13493262	.	+	0	Parent=Os10t0400100-01
Chr10	irgsp1_rep	CDS	13493678	13493831	.	+	1	Parent=Os10t0400100-01
Chr10	irgsp1_rep	CDS	13493965	13494118	.	+	0	Parent=Os10t0400100-01
Chr10	irgsp1_rep	CDS	13494205	13494437	.	+	2	Parent=Os10t0400100-01
Chr10	irgsp1_rep	CDS	13494532	13494675	.	+	0	Parent=Os10t0400100-01
Chr10	irgsp1_rep	CDS	13494820	13494910	.	+	0	Parent=Os10t0400100-01
Chr10	irgsp1_rep	CDS	13495102	13495206	.	+	2	Parent=Os10t0400100-01
Chr10	irgsp1_rep	CDS	13495316	13495432	.	+	2	Parent=Os10t0400100-01
Chr10	irgsp1_rep	CDS	13495617	13495735	.	+	2	Parent=Os10t0400100-01
Chr10	irgsp1_rep	CDS	13495843	13495908	.	+	0	Parent=Os10t0400100-01
Chr10	irgsp1_rep	CDS	13496005	13496133	.	+	0	Parent=Os10t0400100-01
Chr10	irgsp1_rep	CDS	13496223	13496366	.	+	0	Parent=Os10t0400100-01
Chr10	irgsp1_rep	CDS	13496448	13496552	.	+	0	Parent=Os10t0400100-01
Chr10	irgsp1_rep	three_prime_UTR	13496553	13496772	.	+	.	Parent=Os10t0400100-01
Chr10	irgsp1_rep	mRNA	13497363	13499401	.	-	.	ID=Os10t0400200-01;Name=Os10t0400200-01;Locus_id=Os10g0400200;RAP-DB Gene Symbol Synonym(s)=OsGluA2;RAP-DB Gene Name Synonym(s)=Glutelin type-A 2%2C Glutelin type-A 2 precursor;CGSNL Gene Symbol=GLUA2;CGSNL Gene Name=GLUTELIN SUBFAMILY A2 FROM WILD RICE SPECIES;Oryzabase Gene Symbol Synonym(s)=Glua2*%2C Glua2%2C GLUA-2%2C GluA-2%2C Glu20%2C GluA2%2C OsEnS-137;Oryzabase Gene Name Synonym(s)=Glutelin subfamily A2 from wild rice species%2C Glutelin type-A 2 precursor%2C Glutelin type-A 2%2C Glutelin type II%2C Glutelin type-A 2 acidic chain%2C Glutelin type-A 2 basic chain%2C Glutelin subfamily A-2 from wild rice species%2C Rice glutelin-20%2C glutelin-20%2C endosperm-specific gene 137;Note=Glutelin type-A2 precursor%2C Regulation of grain protein content;Transcript_evidence=AK107314;ORF_evidence=P07730;GO=Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=RmlC-like cupin domain superfamily (IPR011051),RmlC-like jelly roll fold (IPR014710),11-S seed storage protein%2C plant (IPR006044),Cupin 1 (IPR006045),11-S seed storage protein%2C conserved site (IPR022379);NIAS_FLcDNA=002-126-D11;Manual Curation=May 24%2C 2019;Literature_PMID=31028264;Oryzabase=138;Expression=AK107314;TENOR=Os10t0400200-01;KEGG=Os10t0400200-01
Chr10	irgsp1_rep	five_prime_UTR	13499370	13499401	.	-	.	Parent=Os10t0400200-01
Chr10	irgsp1_rep	CDS	13499039	13499369	.	-	0	Parent=Os10t0400200-01
Chr10	irgsp1_rep	CDS	13498675	13498949	.	-	2	Parent=Os10t0400200-01
Chr10	irgsp1_rep	CDS	13498092	13498571	.	-	0	Parent=Os10t0400200-01
Chr10	irgsp1_rep	CDS	13497595	13498008	.	-	0	Parent=Os10t0400200-01
Chr10	irgsp1_rep	three_prime_UTR	13497363	13497594	.	-	.	Parent=Os10t0400200-01
Chr10	irgsp1_rep	mRNA	13501851	13503806	.	-	.	ID=Os10t0400250-00;Name=Os10t0400250-00;Locus_id=Os10g0400250;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001176141.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os10t0400250-00;KEGG=Os10t0400250-00
Chr10	irgsp1_rep	CDS	13501851	13503806	.	-	0	Parent=Os10t0400250-00
Chr10	irgsp1_rep	mRNA	13524417	13525925	.	-	.	ID=Os10t0400500-00;Name=Os10t0400500-00;Locus_id=Os10g0400500;Oryzabase Gene Name Synonym(s)=Pyridoxal dependant decarboxylase;Note=Similar to Pyridoxal-dependent decarboxylase conserved domain containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q338J0 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: carboxylic acid metabolic process (GO:0019752),Molecular Function: catalytic activity (GO:0003824),Molecular Function: carboxy-lyase activity (GO:0016831),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent decarboxylase (IPR002129),Aromatic-L-amino-acid decarboxylase (IPR010977),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);Oryzabase=21583;TENOR=Os10t0400500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	13524417	13525925	.	-	0	Parent=Os10t0400500-00
Chr10	irgsp1_rep	mRNA	13535147	13536194	.	-	.	ID=Os10t0400700-01;Name=Os10t0400700-01;Locus_id=Os10g0400700;Note=Hypothetical protein.;Transcript_evidence=AK072513 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023133O19;Expression=AK072513;TENOR=Os10t0400700-01;KEGG=Os10t0400700-01
Chr10	irgsp1_rep	five_prime_UTR	13535904	13536194	.	-	.	Parent=Os10t0400700-01
Chr10	irgsp1_rep	CDS	13535628	13535903	.	-	0	Parent=Os10t0400700-01
Chr10	irgsp1_rep	three_prime_UTR	13535147	13535627	.	-	.	Parent=Os10t0400700-01
Chr10	irgsp1_rep	mRNA	13537546	13542435	.	-	.	ID=Os10t0400800-01;Name=Os10t0400800-01;Locus_id=Os10g0400800;Note=Similar to Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) (Phenylalanine--tRNA ligase alpha chain) (PheRS) (CML33).;Transcript_evidence=AK068126 (DDBJ%2C Best hit);ORF_evidence=B6SS66 (UniProt);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: phenylalanyl-tRNA aminoacylation (GO:0006432),Biological Process: tRNA aminoacylation (GO:0043039),Cellular Component: cytoplasm (GO:0005737),Molecular Function: tRNA binding (GO:0000049),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: phenylalanine-tRNA ligase activity (GO:0004826),Molecular Function: ATP binding (GO:0005524);InterPro=Phenylalanyl-tRNA synthetase (IPR002319),Phenylalanyl-tRNA synthetase%2C class IIc%2C alpha subunit (IPR004529),Aminoacyl-tRNA synthetase%2C class II (IPR006195);NIAS_FLcDNA=J013129C16;Expression=AK068126;TENOR=Os10t0400800-01;KEGG=Os10t0400800-01 (EC:6.1.1.20)
Chr10	irgsp1_rep	five_prime_UTR	13542269	13542435	.	-	.	Parent=Os10t0400800-01
Chr10	irgsp1_rep	CDS	13542116	13542268	.	-	0	Parent=Os10t0400800-01
Chr10	irgsp1_rep	CDS	13541903	13542025	.	-	0	Parent=Os10t0400800-01
Chr10	irgsp1_rep	CDS	13541701	13541799	.	-	0	Parent=Os10t0400800-01
Chr10	irgsp1_rep	CDS	13541382	13541438	.	-	0	Parent=Os10t0400800-01
Chr10	irgsp1_rep	CDS	13541030	13541085	.	-	0	Parent=Os10t0400800-01
Chr10	irgsp1_rep	CDS	13540840	13540932	.	-	1	Parent=Os10t0400800-01
Chr10	irgsp1_rep	CDS	13540422	13540512	.	-	1	Parent=Os10t0400800-01
Chr10	irgsp1_rep	CDS	13540305	13540342	.	-	0	Parent=Os10t0400800-01
Chr10	irgsp1_rep	CDS	13540192	13540230	.	-	1	Parent=Os10t0400800-01
Chr10	irgsp1_rep	CDS	13539983	13540059	.	-	1	Parent=Os10t0400800-01
Chr10	irgsp1_rep	CDS	13539831	13539915	.	-	2	Parent=Os10t0400800-01
Chr10	irgsp1_rep	CDS	13539666	13539765	.	-	1	Parent=Os10t0400800-01
Chr10	irgsp1_rep	CDS	13539408	13539504	.	-	0	Parent=Os10t0400800-01
Chr10	irgsp1_rep	CDS	13539227	13539298	.	-	2	Parent=Os10t0400800-01
Chr10	irgsp1_rep	CDS	13538578	13538644	.	-	2	Parent=Os10t0400800-01
Chr10	irgsp1_rep	CDS	13538354	13538479	.	-	1	Parent=Os10t0400800-01
Chr10	irgsp1_rep	CDS	13538085	13538139	.	-	1	Parent=Os10t0400800-01
Chr10	irgsp1_rep	CDS	13537952	13538005	.	-	0	Parent=Os10t0400800-01
Chr10	irgsp1_rep	three_prime_UTR	13537546	13537951	.	-	.	Parent=Os10t0400800-01
Chr10	irgsp1_rep	mRNA	13537665	13540871	.	-	.	ID=Os10t0400800-02;Name=Os10t0400800-02;Locus_id=Os10g0400800;Note=Similar to Phenylalanyl-tRNA synthetase alpha chain.;Transcript_evidence=AK058484 (DDBJ%2C Best hit);ORF_evidence=B6SS66 (UniProt);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: phenylalanyl-tRNA aminoacylation (GO:0006432),Biological Process: tRNA aminoacylation (GO:0043039),Cellular Component: cytoplasm (GO:0005737),Molecular Function: tRNA binding (GO:0000049),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: phenylalanine-tRNA ligase activity (GO:0004826),Molecular Function: ATP binding (GO:0005524);InterPro=Phenylalanyl-tRNA synthetase (IPR002319),Phenylalanyl-tRNA synthetase%2C class IIc%2C alpha subunit (IPR004529),Aminoacyl-tRNA synthetase%2C class II (IPR006195);NIAS_FLcDNA=001-016-D07;Expression=AK058484;TENOR=Os10t0400800-02;KEGG=Os10t0400800-02 (EC:6.1.1.20)
Chr10	irgsp1_rep	CDS	13540840	13540871	.	-	0	Parent=Os10t0400800-02
Chr10	irgsp1_rep	CDS	13540422	13540512	.	-	1	Parent=Os10t0400800-02
Chr10	irgsp1_rep	CDS	13540305	13540342	.	-	0	Parent=Os10t0400800-02
Chr10	irgsp1_rep	CDS	13540192	13540230	.	-	1	Parent=Os10t0400800-02
Chr10	irgsp1_rep	CDS	13539983	13540059	.	-	1	Parent=Os10t0400800-02
Chr10	irgsp1_rep	CDS	13539831	13539915	.	-	2	Parent=Os10t0400800-02
Chr10	irgsp1_rep	CDS	13539666	13539765	.	-	1	Parent=Os10t0400800-02
Chr10	irgsp1_rep	CDS	13539408	13539504	.	-	0	Parent=Os10t0400800-02
Chr10	irgsp1_rep	CDS	13539227	13539298	.	-	2	Parent=Os10t0400800-02
Chr10	irgsp1_rep	CDS	13538578	13538644	.	-	2	Parent=Os10t0400800-02
Chr10	irgsp1_rep	CDS	13538354	13538479	.	-	1	Parent=Os10t0400800-02
Chr10	irgsp1_rep	CDS	13538085	13538139	.	-	1	Parent=Os10t0400800-02
Chr10	irgsp1_rep	CDS	13537952	13538005	.	-	0	Parent=Os10t0400800-02
Chr10	irgsp1_rep	three_prime_UTR	13537665	13537951	.	-	.	Parent=Os10t0400800-02
Chr10	irgsp1_rep	mRNA	13543442	13552221	.	+	.	ID=Os10t0400900-01;Name=Os10t0400900-01;Locus_id=Os10g0400900;Note=Similar to Colon cancer-associated protein Mic1-like containing protein%2C expressed.;Transcript_evidence=AK072620 (DDBJ%2C Best hit);ORF_evidence=Q338I5 (UniProt);InterPro=Colon cancer-associated Mic1-like (IPR009755);NIAS_FLcDNA=J023125B16;TENOR=Os10t0400900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	13543442	13543708	.	+	.	Parent=Os10t0400900-01
Chr10	irgsp1_rep	five_prime_UTR	13544377	13544478	.	+	.	Parent=Os10t0400900-01
Chr10	irgsp1_rep	five_prime_UTR	13545511	13545595	.	+	.	Parent=Os10t0400900-01
Chr10	irgsp1_rep	five_prime_UTR	13546182	13546189	.	+	.	Parent=Os10t0400900-01
Chr10	irgsp1_rep	CDS	13546190	13546330	.	+	0	Parent=Os10t0400900-01
Chr10	irgsp1_rep	CDS	13546412	13546671	.	+	0	Parent=Os10t0400900-01
Chr10	irgsp1_rep	CDS	13547117	13547270	.	+	1	Parent=Os10t0400900-01
Chr10	irgsp1_rep	CDS	13547851	13547960	.	+	0	Parent=Os10t0400900-01
Chr10	irgsp1_rep	CDS	13548040	13548127	.	+	1	Parent=Os10t0400900-01
Chr10	irgsp1_rep	CDS	13548735	13549046	.	+	0	Parent=Os10t0400900-01
Chr10	irgsp1_rep	CDS	13549126	13549200	.	+	0	Parent=Os10t0400900-01
Chr10	irgsp1_rep	CDS	13549322	13549863	.	+	0	Parent=Os10t0400900-01
Chr10	irgsp1_rep	CDS	13550240	13550348	.	+	1	Parent=Os10t0400900-01
Chr10	irgsp1_rep	CDS	13551017	13551196	.	+	0	Parent=Os10t0400900-01
Chr10	irgsp1_rep	CDS	13551547	13551708	.	+	0	Parent=Os10t0400900-01
Chr10	irgsp1_rep	three_prime_UTR	13551709	13552221	.	+	.	Parent=Os10t0400900-01
Chr10	irgsp1_rep	mRNA	13548843	13551967	.	+	.	ID=Os10t0400900-02;Name=Os10t0400900-02;Locus_id=Os10g0400900;Note=Similar to Colon cancer-associated protein Mic1-like containing protein%2C expressed.;Transcript_evidence=AK062191 (DDBJ%2C Best hit);ORF_evidence=Q338I5 (UniProt);InterPro=Colon cancer-associated Mic1-like (IPR009755);NIAS_FLcDNA=001-046-E11;Expression=AK062191;TENOR=Os10t0400900-02;KEGG=Os10t0400900-02
Chr10	irgsp1_rep	CDS	13548843	13549046	.	+	0	Parent=Os10t0400900-02
Chr10	irgsp1_rep	CDS	13549126	13549200	.	+	0	Parent=Os10t0400900-02
Chr10	irgsp1_rep	CDS	13549322	13549863	.	+	0	Parent=Os10t0400900-02
Chr10	irgsp1_rep	CDS	13550240	13550348	.	+	1	Parent=Os10t0400900-02
Chr10	irgsp1_rep	CDS	13551017	13551196	.	+	0	Parent=Os10t0400900-02
Chr10	irgsp1_rep	CDS	13551547	13551708	.	+	0	Parent=Os10t0400900-02
Chr10	irgsp1_rep	three_prime_UTR	13551709	13551967	.	+	.	Parent=Os10t0400900-02
Chr10	irgsp1_rep	mRNA	13552894	13553361	.	-	.	ID=Os10t0401000-01;Name=Os10t0401000-01;Locus_id=Os10g0401000;Note=Conserved hypothetical protein.;Transcript_evidence=AK120891 (DDBJ%2C Best hit);ORF_evidence=A2Z715 (UniProt);NIAS_FLcDNA=J023029H17;Expression=AK120891;TENOR=Os10t0401000-01;KEGG=Os10t0401000-01
Chr10	irgsp1_rep	five_prime_UTR	13553304	13553361	.	-	.	Parent=Os10t0401000-01
Chr10	irgsp1_rep	CDS	13553061	13553303	.	-	0	Parent=Os10t0401000-01
Chr10	irgsp1_rep	three_prime_UTR	13552894	13553060	.	-	.	Parent=Os10t0401000-01
Chr10	irgsp1_rep	mRNA	13557781	13562033	.	+	.	ID=Os10t0401100-00;Name=Os10t0401100-00;Locus_id=Os10g0401100;Note=Hypothetical conserved gene.;Transcript_evidence=EU962630 (DDBJ);ORF_evidence=A2Z716 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RanBP2-type (IPR001876),Endonuclease/exonuclease/phosphatase (IPR005135);TENOR=Os10t0401100-00;KEGG=Os10t0401100-00
Chr10	irgsp1_rep	CDS	13557781	13558168	.	+	0	Parent=Os10t0401100-00
Chr10	irgsp1_rep	CDS	13559418	13559563	.	+	2	Parent=Os10t0401100-00
Chr10	irgsp1_rep	CDS	13559635	13559747	.	+	0	Parent=Os10t0401100-00
Chr10	irgsp1_rep	CDS	13561408	13561411	.	+	1	Parent=Os10t0401100-00
Chr10	irgsp1_rep	three_prime_UTR	13561412	13562033	.	+	.	Parent=Os10t0401100-00
Chr10	irgsp1_rep	mRNA	13600900	13606431	.	-	.	ID=Os10t0402200-01;Name=Os10t0402200-01;Locus_id=Os10g0402200;RAP-DB Gene Symbol Synonym(s)=ORC3%2C OsORC3;RAP-DB Gene Name Synonym(s)=ORIGIN RECOGNITION COMPLEX 3%2C Origin Recognition Complex subunit 3;CGSNL Gene Symbol=ORC3;CGSNL Gene Name=ORIGIN RECOGNITION COMPLEX 3;Oryzabase Gene Symbol Synonym(s)=OsORC3;Note=Origin recognition complex subunit 3%2C Lateral root development;Transcript_evidence=AB100408;ORF_evidence=Q852Q8;GO=Biological Process: DNA replication (GO:0006260),Molecular Function: DNA binding (GO:0003677),Cellular Component: nuclear origin of replication recognition complex (GO:0005664);InterPro=Origin recognition complex%2C subunit 3 (IPR020795);Manual Curation=April 1%2C 2014;Literature_PMID=23346890,15939553;Oryzabase=9123;TENOR=Os10t0402200-00
Chr10	irgsp1_rep	CDS	13606381	13606431	.	-	0	Parent=Os10t0402200-01
Chr10	irgsp1_rep	CDS	13606027	13606275	.	-	0	Parent=Os10t0402200-01
Chr10	irgsp1_rep	CDS	13605717	13605891	.	-	0	Parent=Os10t0402200-01
Chr10	irgsp1_rep	CDS	13605458	13605627	.	-	2	Parent=Os10t0402200-01
Chr10	irgsp1_rep	CDS	13605215	13605345	.	-	0	Parent=Os10t0402200-01
Chr10	irgsp1_rep	CDS	13604102	13604375	.	-	1	Parent=Os10t0402200-01
Chr10	irgsp1_rep	CDS	13603916	13603990	.	-	0	Parent=Os10t0402200-01
Chr10	irgsp1_rep	CDS	13603683	13603759	.	-	0	Parent=Os10t0402200-01
Chr10	irgsp1_rep	CDS	13603529	13603619	.	-	1	Parent=Os10t0402200-01
Chr10	irgsp1_rep	CDS	13603034	13603191	.	-	0	Parent=Os10t0402200-01
Chr10	irgsp1_rep	CDS	13602715	13602784	.	-	1	Parent=Os10t0402200-01
Chr10	irgsp1_rep	CDS	13602289	13602368	.	-	0	Parent=Os10t0402200-01
Chr10	irgsp1_rep	CDS	13602030	13602107	.	-	1	Parent=Os10t0402200-01
Chr10	irgsp1_rep	CDS	13601779	13601854	.	-	1	Parent=Os10t0402200-01
Chr10	irgsp1_rep	CDS	13601539	13601666	.	-	0	Parent=Os10t0402200-01
Chr10	irgsp1_rep	CDS	13601134	13601301	.	-	1	Parent=Os10t0402200-01
Chr10	irgsp1_rep	CDS	13600900	13601005	.	-	1	Parent=Os10t0402200-01
Chr10	irgsp1_rep	mRNA	13606664	13606711	.	-	.	ID=Os10t0402300-00;Name=Os10t0402300-00;Locus_id=Os10g0402300;Note=Non-protein coding transcript.;Transcript_evidence=X02683 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0402300-00
Chr10	irgsp1_rep	exon	13606664	13606711	.	-	.	Parent=Os10t0402300-00
Chr10	irgsp1_rep	mRNA	13611824	13614202	.	-	.	ID=Os10t0402400-00;Name=Os10t0402400-00;Locus_id=Os10g0402400;Note=Transferase family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001064551.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os10t0402400-00;KEGG=Os10t0402400-00
Chr10	irgsp1_rep	CDS	13613513	13614202	.	-	0	Parent=Os10t0402400-00
Chr10	irgsp1_rep	CDS	13611824	13612504	.	-	0	Parent=Os10t0402400-00
Chr10	irgsp1_rep	mRNA	13658790	13660543	.	-	.	ID=Os10t0403000-01;Name=Os10t0403000-01;Locus_id=Os10g0403000;RAP-DB Gene Symbol Synonym(s)=PLA1%2C pla1%2C plt1%2C CYP78A11;RAP-DB Gene Name Synonym(s)=PLASTOCHRON 1%2C plastoChron1%2C plastoChron 1%2C plastoChron-1%2C CytoChrome P450 78A11%2C Protein PLASTOCHRON1;CGSNL Gene Symbol=PLA1;CGSNL Gene Name=PLASTOCHRON 1;Oryzabase Gene Symbol Synonym(s)=pla1%2C OsPLA1%2C plt1%2C CYP78A11;Oryzabase Gene Name Synonym(s)=plastoChron1%2C plastoChron 1%2C plastoChron-1%2C CytoChrome P450 78A11%2C Protein PLASTOCHRON1;Note=CytoChrome P450 protein%2C CYP78A11%2C Regulation of leaf initiation rate and vegetative-reproductive phase change;Transcript_evidence=AB096259;ORF_evidence=Q7Y1V5;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);Manual Curation=December 9%2C 2015;Literature_PMID=14711998;Oryzabase=282;Expression=AB096259;TENOR=Os10t0403000-00
Chr10	irgsp1_rep	CDS	13659509	13660543	.	-	0	Parent=Os10t0403000-01
Chr10	irgsp1_rep	CDS	13658790	13659422	.	-	0	Parent=Os10t0403000-01
Chr10	irgsp1_rep	mRNA	13658883	13660435	.	+	.	ID=Os10t0403200-00;Name=Os10t0403200-00;Locus_id=Os10g0403200;Note=Hypothetical protein.;Transcript_evidence=tplb0044m18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0403200-00
Chr10	irgsp1_rep	CDS	13658883	13659421	.	+	0	Parent=Os10t0403200-00
Chr10	irgsp1_rep	CDS	13659508	13660435	.	+	1	Parent=Os10t0403200-00
Chr10	irgsp1_rep	mRNA	13690098	13691656	.	-	.	ID=Os10t0403400-01;Name=Os10t0403400-01;Locus_id=Os10g0403400;Note=Hypothetical protein.;Transcript_evidence=AK100194 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023036O10;Expression=AK100194;TENOR=Os10t0403400-01;KEGG=Os10t0403400-01
Chr10	irgsp1_rep	five_prime_UTR	13690976	13691656	.	-	.	Parent=Os10t0403400-01
Chr10	irgsp1_rep	CDS	13690517	13690975	.	-	0	Parent=Os10t0403400-01
Chr10	irgsp1_rep	three_prime_UTR	13690428	13690516	.	-	.	Parent=Os10t0403400-01
Chr10	irgsp1_rep	three_prime_UTR	13690098	13690351	.	-	.	Parent=Os10t0403400-01
Chr10	irgsp1_rep	mRNA	13708218	13713302	.	+	.	ID=Os10t0403700-00;Name=Os10t0403700-00;Locus_id=Os10g0403700;Oryzabase Gene Symbol Synonym(s)=Ord;Oryzabase Gene Name Synonym(s)=oxidoreductase;Note=Similar to oxidoreductase.;Transcript_evidence=AK335721 (DDBJ);ORF_evidence=NP_001147645.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Oxidoreductase%2C N-terminal (IPR000683),Oxidoreductase%2C C-terminal (IPR004104),NAD(P)-binding domain (IPR016040);Oryzabase=19681;TENOR=Os10t0403700-00;KEGG=Os10t0403700-00 (EC:1.1.1.179%2C EC:1.3.1.20)
Chr10	irgsp1_rep	five_prime_UTR	13708218	13708289	.	+	.	Parent=Os10t0403700-00
Chr10	irgsp1_rep	CDS	13708290	13708811	.	+	0	Parent=Os10t0403700-00
Chr10	irgsp1_rep	CDS	13712680	13713300	.	+	0	Parent=Os10t0403700-00
Chr10	irgsp1_rep	three_prime_UTR	13713301	13713302	.	+	.	Parent=Os10t0403700-00
Chr10	irgsp1_rep	mRNA	13721970	13722965	.	-	.	ID=Os10t0403800-00;Name=Os10t0403800-00;Locus_id=Os10g0403800;Oryzabase Gene Symbol Synonym(s)=OsBUL3%2C BUL3%2C OsbHLH174%2C bHLH174;Oryzabase Gene Name Synonym(s)=BRASSINOSTEROID UPREGULATED 1-LIKE3%2C BRASSINOSTEROID UPREGULATED 1-LIKE 3%2C basic helix-loop-helix protein 174;Note=Similar to DNA binding protein.;Transcript_evidence=CT837942 (DDBJ%2C Best hit);ORF_evidence=NP_001149761.1 (RefSeq);InterPro=Helix-loop-helix DNA-binding (IPR011598);Oryzabase=21576;TENOR=Os10t0403800-00;KEGG=Os10t0403800-00
Chr10	irgsp1_rep	five_prime_UTR	13722733	13722965	.	-	.	Parent=Os10t0403800-00
Chr10	irgsp1_rep	CDS	13722619	13722732	.	-	0	Parent=Os10t0403800-00
Chr10	irgsp1_rep	CDS	13722352	13722504	.	-	0	Parent=Os10t0403800-00
Chr10	irgsp1_rep	three_prime_UTR	13721970	13722351	.	-	.	Parent=Os10t0403800-00
Chr10	irgsp1_rep	mRNA	13773717	13774369	.	+	.	ID=Os10t0404300-00;Name=Os10t0404300-00;Locus_id=Os10g0404300;CGSNL Gene Symbol=ILI7;CGSNL Gene Name=INCREASED LEAF INCLINATION 7;Oryzabase Gene Symbol Synonym(s)=OsILI7%2C OsbHLH173%2C bHLH173;Oryzabase Gene Name Synonym(s)=Increased Leaf Inclination7%2C basic helix-loop-helix protein 173;Note=Similar to predicted protein.;Transcript_evidence=CT836589 (DDBJ%2C Best hit);ORF_evidence=NP_849712.1 (RefSeq);InterPro=Helix-loop-helix DNA-binding (IPR011598);Oryzabase=10950;TENOR=Os10t0404300-00;KEGG=Os10t0404300-00
Chr10	irgsp1_rep	five_prime_UTR	13773717	13773810	.	+	.	Parent=Os10t0404300-00
Chr10	irgsp1_rep	CDS	13773811	13773933	.	+	0	Parent=Os10t0404300-00
Chr10	irgsp1_rep	CDS	13774042	13774194	.	+	0	Parent=Os10t0404300-00
Chr10	irgsp1_rep	three_prime_UTR	13774195	13774369	.	+	.	Parent=Os10t0404300-00
Chr10	irgsp1_rep	mRNA	13778846	13782611	.	+	.	ID=Os10t0404500-01;Name=Os10t0404500-01;Locus_id=Os10g0404500;CGSNL Gene Symbol=SUT3;CGSNL Gene Name=SUCROSE TRANSPORTER 3;Oryzabase Gene Symbol Synonym(s)=OsSUT3(t)%2C OsSUT3%2C SUC3%2C OsSUT2;Oryzabase Gene Name Synonym(s)=sucrose transporter3(t);Note=Similar to Sucrose transporter.;Transcript_evidence=AK071452 (DDBJ%2C Best hit);ORF_evidence=Q948L0 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transmembrane transporter activity (GO:0022857);InterPro=General substrate transporter (IPR005828),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J023091J01;Oryzabase=2209;Expression=AK071452;TENOR=Os10t0404500-01;KEGG=Os10t0404500-01
Chr10	irgsp1_rep	five_prime_UTR	13778846	13778881	.	+	.	Parent=Os10t0404500-01
Chr10	irgsp1_rep	CDS	13778882	13779037	.	+	0	Parent=Os10t0404500-01
Chr10	irgsp1_rep	CDS	13780696	13780761	.	+	0	Parent=Os10t0404500-01
Chr10	irgsp1_rep	CDS	13780912	13781061	.	+	0	Parent=Os10t0404500-01
Chr10	irgsp1_rep	three_prime_UTR	13781062	13782611	.	+	.	Parent=Os10t0404500-01
Chr10	irgsp1_rep	mRNA	13783420	13783764	.	+	.	ID=Os10t0404533-00;Name=Os10t0404533-00;Locus_id=Os10g0404533;Note=Similar to Sucrose transport protein SUT3.;Transcript_evidence=ab initio prediction;ORF_evidence=Q948L0 (UniProt);TENOR=Os10t0404533-00
Chr10	irgsp1_rep	CDS	13783420	13783764	.	+	0	Parent=Os10t0404533-00
Chr10	irgsp1_rep	mRNA	13784431	13784910	.	+	.	ID=Os10t0404566-00;Name=Os10t0404566-00;Locus_id=Os10g0404566;Note=Similar to Sucrose transporter.;Transcript_evidence=ab initio prediction;ORF_evidence=Q948L0 (UniProt);TENOR=Os10t0404566-00;KEGG=Os10t0404566-00
Chr10	irgsp1_rep	CDS	13784431	13784910	.	+	0	Parent=Os10t0404566-00
Chr10	irgsp1_rep	mRNA	13804909	13806731	.	+	.	ID=Os10t0404900-01;Name=Os10t0404900-01;Locus_id=Os10g0404900;CGSNL Gene Symbol=HOX23;CGSNL Gene Name=HOMEOBOX GENE 23;Oryzabase Gene Symbol Synonym(s)=Oshox23%2C OsHox23;Oryzabase Gene Name Synonym(s)=rice homeobox gene 23%2C Homeobox-leucine zipper protein HOX23%2C Homeodomain transcription factor HOX23%2C HD-ZIP protein HOX23;Note=Similar to HAHB-5 (Fragment).;Transcript_evidence=AK287700 (DDBJ%2C Best hit);ORF_evidence=Q94GL5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: transcription regulatory region sequence-specific DNA binding (GO:0000976),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Helix-turn-helix motif%2C lambda-like repressor (IPR000047),Homeobox (IPR001356),Leucine zipper%2C homeobox-associated (IPR003106),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Homeobox%2C conserved site (IPR017970);NIAS_FLcDNA=J065130H05;Oryzabase=8460;TENOR=Os10t0404900-01;KEGG=Os10t0404900-01
Chr10	irgsp1_rep	five_prime_UTR	13804909	13804933	.	+	.	Parent=Os10t0404900-01
Chr10	irgsp1_rep	CDS	13804934	13805521	.	+	0	Parent=Os10t0404900-01
Chr10	irgsp1_rep	CDS	13805740	13806219	.	+	0	Parent=Os10t0404900-01
Chr10	irgsp1_rep	three_prime_UTR	13806220	13806731	.	+	.	Parent=Os10t0404900-01
Chr10	irgsp1_rep	mRNA	13823657	13826605	.	+	.	ID=Os10t0405100-01;Name=Os10t0405100-01;Locus_id=Os10g0405100;CGSNL Gene Symbol=RLCK299;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 299;Oryzabase Gene Symbol Synonym(s)=OsRLCK299;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 299;Note=Similar to serine/threonine-protein kinase NAK.;Transcript_evidence=AK100413 (DDBJ%2C Best hit);ORF_evidence=NP_001147807.1 (RefSeq);GO=Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J023087K14;Oryzabase=18975;Expression=AK100413;TENOR=Os10t0405100-01;KEGG=Os10t0405100-01
Chr10	irgsp1_rep	five_prime_UTR	13823657	13825416	.	+	.	Parent=Os10t0405100-01
Chr10	irgsp1_rep	CDS	13825417	13825815	.	+	0	Parent=Os10t0405100-01
Chr10	irgsp1_rep	three_prime_UTR	13825816	13826014	.	+	.	Parent=Os10t0405100-01
Chr10	irgsp1_rep	three_prime_UTR	13826111	13826247	.	+	.	Parent=Os10t0405100-01
Chr10	irgsp1_rep	three_prime_UTR	13826346	13826605	.	+	.	Parent=Os10t0405100-01
Chr10	irgsp1_rep	mRNA	13823704	13829400	.	+	.	ID=Os10t0405100-02;Name=Os10t0405100-02;Locus_id=Os10g0405100;CGSNL Gene Symbol=RLCK299;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 299;Oryzabase Gene Symbol Synonym(s)=OsRLCK299;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 299;Note=Similar to Protein kinase APK1B%2C chloroplast precursor (EC 2.7.1.-).;Transcript_evidence=AK102358 (DDBJ%2C Best hit);ORF_evidence=NP_001147807.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033091H20;Oryzabase=18975;Expression=AK102358;TENOR=Os10t0405100-02;KEGG=Os10t0405100-02
Chr10	irgsp1_rep	five_prime_UTR	13823704	13824143	.	+	.	Parent=Os10t0405100-02
Chr10	irgsp1_rep	CDS	13824144	13824204	.	+	0	Parent=Os10t0405100-02
Chr10	irgsp1_rep	CDS	13825451	13825800	.	+	2	Parent=Os10t0405100-02
Chr10	irgsp1_rep	CDS	13825879	13826014	.	+	0	Parent=Os10t0405100-02
Chr10	irgsp1_rep	CDS	13826111	13826247	.	+	2	Parent=Os10t0405100-02
Chr10	irgsp1_rep	CDS	13826346	13826469	.	+	0	Parent=Os10t0405100-02
Chr10	irgsp1_rep	CDS	13828698	13829176	.	+	2	Parent=Os10t0405100-02
Chr10	irgsp1_rep	three_prime_UTR	13829177	13829400	.	+	.	Parent=Os10t0405100-02
Chr10	irgsp1_rep	mRNA	13833340	13836254	.	+	.	ID=Os10t0405300-01;Name=Os10t0405300-01;Locus_id=Os10g0405300;Note=Pathogenic type III effector avirulence factor Avr cleavage site domain containing protein.;Transcript_evidence=AK066928 (DDBJ%2C Best hit);ORF_evidence=A2Z736 (UniProt);InterPro=Pathogenic type III effector avirulence factor Avr cleavage site (IPR008700);NIAS_FLcDNA=J013091H23;Expression=AK066928;TENOR=Os10t0405300-01;KEGG=Os10t0405300-01
Chr10	irgsp1_rep	five_prime_UTR	13833340	13833512	.	+	.	Parent=Os10t0405300-01
Chr10	irgsp1_rep	CDS	13833513	13833530	.	+	0	Parent=Os10t0405300-01
Chr10	irgsp1_rep	CDS	13833763	13834053	.	+	0	Parent=Os10t0405300-01
Chr10	irgsp1_rep	CDS	13835878	13835925	.	+	0	Parent=Os10t0405300-01
Chr10	irgsp1_rep	three_prime_UTR	13835926	13836254	.	+	.	Parent=Os10t0405300-01
Chr10	irgsp1_rep	mRNA	13842020	13848949	.	+	.	ID=Os10t0405500-01;Name=Os10t0405500-01;Locus_id=Os10g0405500;RAP-DB Gene Symbol Synonym(s)=PAIR3;RAP-DB Gene Name Synonym(s)=HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 3;CGSNL Gene Symbol=PAIR3;CGSNL Gene Name=HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 3;Note=Coiled-coil protein%2C Homologous Chromosome pairing and synapsis in meiosis;Transcript_evidence=FJ449711 (DDBJ),FJ449712 (DDBJ);ORF_evidence=B9G5N1 (UniProt);Manual Curation=July 27%2C 2009;Literature_PMID=19392701;Oryzabase=9024;TENOR=Os10t0405500-01
Chr10	irgsp1_rep	five_prime_UTR	13842020	13842029	.	+	.	Parent=Os10t0405500-01
Chr10	irgsp1_rep	five_prime_UTR	13843104	13843155	.	+	.	Parent=Os10t0405500-01
Chr10	irgsp1_rep	CDS	13843156	13843185	.	+	0	Parent=Os10t0405500-01
Chr10	irgsp1_rep	CDS	13843304	13844953	.	+	0	Parent=Os10t0405500-01
Chr10	irgsp1_rep	CDS	13845062	13845209	.	+	0	Parent=Os10t0405500-01
Chr10	irgsp1_rep	CDS	13846240	13846380	.	+	2	Parent=Os10t0405500-01
Chr10	irgsp1_rep	CDS	13846453	13846513	.	+	2	Parent=Os10t0405500-01
Chr10	irgsp1_rep	CDS	13846606	13846755	.	+	1	Parent=Os10t0405500-01
Chr10	irgsp1_rep	CDS	13846876	13846934	.	+	1	Parent=Os10t0405500-01
Chr10	irgsp1_rep	CDS	13847453	13847587	.	+	2	Parent=Os10t0405500-01
Chr10	irgsp1_rep	CDS	13848333	13848424	.	+	2	Parent=Os10t0405500-01
Chr10	irgsp1_rep	CDS	13848515	13848583	.	+	0	Parent=Os10t0405500-01
Chr10	irgsp1_rep	three_prime_UTR	13848584	13848949	.	+	.	Parent=Os10t0405500-01
Chr10	irgsp1_rep	mRNA	13848985	13853377	.	-	.	ID=Os10t0405600-01;Name=Os10t0405600-01;Locus_id=Os10g0405600;Oryzabase Gene Symbol Synonym(s)=OsPFK10%2C PFK10;Oryzabase Gene Name Synonym(s)=phosphofructokinase 10;Note=Phosphofructokinase family protein.;Transcript_evidence=AK065250 (DDBJ%2C Best hit);ORF_evidence=NP_001147085.1 (RefSeq);GO=Biological Process: glycolysis (GO:0006096),Cellular Component: 6-phosphofructokinase complex (GO:0005945),Molecular Function: 6-phosphofructokinase activity (GO:0003872),Molecular Function: ATP binding (GO:0005524);InterPro=Phosphofructokinase domain (IPR000023),Pyrophosphate-dependent phosphofructokinase TP0108 (IPR012004),Phosphofructokinase (IPR022953);NIAS_FLcDNA=J013002J06;Oryzabase=19617;Expression=AK065250;TENOR=Os10t0405600-01;KEGG=Os10t0405600-01 (EC:2.7.1.11)
Chr10	irgsp1_rep	five_prime_UTR	13853097	13853377	.	-	.	Parent=Os10t0405600-01
Chr10	irgsp1_rep	five_prime_UTR	13852515	13852548	.	-	.	Parent=Os10t0405600-01
Chr10	irgsp1_rep	CDS	13852222	13852514	.	-	0	Parent=Os10t0405600-01
Chr10	irgsp1_rep	CDS	13852058	13852139	.	-	1	Parent=Os10t0405600-01
Chr10	irgsp1_rep	CDS	13851639	13851712	.	-	0	Parent=Os10t0405600-01
Chr10	irgsp1_rep	CDS	13851446	13851557	.	-	1	Parent=Os10t0405600-01
Chr10	irgsp1_rep	CDS	13851202	13851297	.	-	0	Parent=Os10t0405600-01
Chr10	irgsp1_rep	CDS	13851013	13851116	.	-	0	Parent=Os10t0405600-01
Chr10	irgsp1_rep	CDS	13850845	13850917	.	-	1	Parent=Os10t0405600-01
Chr10	irgsp1_rep	CDS	13850542	13850682	.	-	0	Parent=Os10t0405600-01
Chr10	irgsp1_rep	CDS	13850296	13850412	.	-	0	Parent=Os10t0405600-01
Chr10	irgsp1_rep	CDS	13850110	13850214	.	-	0	Parent=Os10t0405600-01
Chr10	irgsp1_rep	CDS	13849817	13849897	.	-	0	Parent=Os10t0405600-01
Chr10	irgsp1_rep	CDS	13849602	13849730	.	-	0	Parent=Os10t0405600-01
Chr10	irgsp1_rep	CDS	13849344	13849511	.	-	0	Parent=Os10t0405600-01
Chr10	irgsp1_rep	three_prime_UTR	13848985	13849343	.	-	.	Parent=Os10t0405600-01
Chr10	irgsp1_rep	mRNA	13867136	13869231	.	-	.	ID=Os10t0406100-01;Name=Os10t0406100-01;Locus_id=Os10g0406100;Note=Similar to PRLI-interacting factor F (Fragment).;Transcript_evidence=AK072672 (DDBJ%2C Best hit);ORF_evidence=Q2P9V1 (UniProt);GO=Biological Process: phosphate-containing compound metabolic process (GO:0006796),Cellular Component: cytoplasm (GO:0005737),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: inorganic diphosphatase activity (GO:0004427);InterPro=Inorganic pyrophosphatase (IPR008162);NIAS_FLcDNA=J023138M09;Expression=AK072672;TENOR=Os10t0406100-01;KEGG=Os10t0406100-01 (EC:3.6.1.1)
Chr10	irgsp1_rep	five_prime_UTR	13869176	13869231	.	-	.	Parent=Os10t0406100-01
Chr10	irgsp1_rep	five_prime_UTR	13869009	13869012	.	-	.	Parent=Os10t0406100-01
Chr10	irgsp1_rep	CDS	13868909	13869008	.	-	0	Parent=Os10t0406100-01
Chr10	irgsp1_rep	CDS	13868786	13868814	.	-	2	Parent=Os10t0406100-01
Chr10	irgsp1_rep	CDS	13868623	13868688	.	-	0	Parent=Os10t0406100-01
Chr10	irgsp1_rep	CDS	13868395	13868502	.	-	0	Parent=Os10t0406100-01
Chr10	irgsp1_rep	CDS	13868243	13868309	.	-	0	Parent=Os10t0406100-01
Chr10	irgsp1_rep	CDS	13868023	13868142	.	-	2	Parent=Os10t0406100-01
Chr10	irgsp1_rep	CDS	13867842	13867923	.	-	2	Parent=Os10t0406100-01
Chr10	irgsp1_rep	CDS	13867621	13867663	.	-	1	Parent=Os10t0406100-01
Chr10	irgsp1_rep	three_prime_UTR	13867136	13867620	.	-	.	Parent=Os10t0406100-01
Chr10	irgsp1_rep	mRNA	13867841	13868996	.	+	.	ID=Os10t0406150-00;Name=Os10t0406150-00;Locus_id=Os10g0406150;Note=Non-protein coding transcript.;Transcript_evidence=BT019269 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0406150-00
Chr10	irgsp1_rep	exon	13867841	13867921	.	+	.	Parent=Os10t0406150-00
Chr10	irgsp1_rep	exon	13868025	13868150	.	+	.	Parent=Os10t0406150-00
Chr10	irgsp1_rep	exon	13868338	13868496	.	+	.	Parent=Os10t0406150-00
Chr10	irgsp1_rep	exon	13868612	13868737	.	+	.	Parent=Os10t0406150-00
Chr10	irgsp1_rep	exon	13868929	13868996	.	+	.	Parent=Os10t0406150-00
Chr10	irgsp1_rep	mRNA	13870240	13875398	.	-	.	ID=Os10t0406200-01;Name=Os10t0406200-01;Locus_id=Os10g0406200;Oryzabase Gene Symbol Synonym(s)=OsRFPH2-11%2C OsHIR1;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPH2-11%2C RING-H2 protein 11%2C heavy metal induced RING E3 ligase 1;Note=Hypothetical conserved gene.;Transcript_evidence=AK288032 (DDBJ%2C Best hit);ORF_evidence=B6SVJ2 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J075139C15;Oryzabase=11772;TENOR=Os10t0406200-01;KEGG=Os10t0406200-01
Chr10	irgsp1_rep	five_prime_UTR	13875134	13875398	.	-	.	Parent=Os10t0406200-01
Chr10	irgsp1_rep	five_prime_UTR	13874669	13874889	.	-	.	Parent=Os10t0406200-01
Chr10	irgsp1_rep	CDS	13874272	13874668	.	-	0	Parent=Os10t0406200-01
Chr10	irgsp1_rep	CDS	13871458	13871498	.	-	2	Parent=Os10t0406200-01
Chr10	irgsp1_rep	CDS	13870498	13871361	.	-	0	Parent=Os10t0406200-01
Chr10	irgsp1_rep	three_prime_UTR	13870240	13870497	.	-	.	Parent=Os10t0406200-01
Chr10	irgsp1_rep	mRNA	13882551	13885214	.	-	.	ID=Os10t0406300-01;Name=Os10t0406300-01;Locus_id=Os10g0406300;CGSNL Gene Symbol=RDD3;CGSNL Gene Name=RICE DOF DAILY FLUCTUATIONS 3;Oryzabase Gene Symbol Synonym(s)=OsDof26%2C Dof26%2C OsDof-26;Oryzabase Gene Name Synonym(s)=Dof zinc factor 26%2C Dof transcription factor 26;Note=Similar to AOBP (Ascorbate oxidase promoter-binding protein).;Transcript_evidence=AK068588 (DDBJ%2C Best hit);ORF_evidence=Q338F9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C Dof-type (IPR003851);NIAS_FLcDNA=J013152P10;Oryzabase=8792;Expression=AK068588;TENOR=Os10t0406300-01;KEGG=Os10t0406300-01
Chr10	irgsp1_rep	five_prime_UTR	13885055	13885214	.	-	.	Parent=Os10t0406300-01
Chr10	irgsp1_rep	CDS	13884968	13885054	.	-	0	Parent=Os10t0406300-01
Chr10	irgsp1_rep	CDS	13883770	13884111	.	-	0	Parent=Os10t0406300-01
Chr10	irgsp1_rep	CDS	13883186	13883341	.	-	0	Parent=Os10t0406300-01
Chr10	irgsp1_rep	three_prime_UTR	13882551	13883185	.	-	.	Parent=Os10t0406300-01
Chr10	irgsp1_rep	mRNA	13882571	13885123	.	+	.	ID=Os10t0406350-00;Name=Os10t0406350-00;Locus_id=Os10g0406350;Note=Hypothetical gene.;Transcript_evidence=tplb0037a22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0406350-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	13882571	13882735	.	+	.	Parent=Os10t0406350-00
Chr10	irgsp1_rep	five_prime_UTR	13882800	13883418	.	+	.	Parent=Os10t0406350-00
Chr10	irgsp1_rep	CDS	13883419	13884078	.	+	0	Parent=Os10t0406350-00
Chr10	irgsp1_rep	three_prime_UTR	13884079	13884113	.	+	.	Parent=Os10t0406350-00
Chr10	irgsp1_rep	three_prime_UTR	13884969	13885123	.	+	.	Parent=Os10t0406350-00
Chr10	irgsp1_rep	mRNA	13896201	13897680	.	-	.	ID=Os10t0406400-00;Name=Os10t0406400-00;Locus_id=Os10g0406400;CGSNL Gene Symbol=CSLA2;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE A2;Oryzabase Gene Symbol Synonym(s)=OsCslA2%2C OsCSLA2;Note=Similar to Cellulose synthase-like A1.;Transcript_evidence=AF435640 (DDBJ%2C Best hit);ORF_evidence=A3QT94 (UniProt);Oryzabase=13880;TENOR=Os10t0406400-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	13897624	13897680	.	-	.	Parent=Os10t0406400-00
Chr10	irgsp1_rep	CDS	13897561	13897623	.	-	0	Parent=Os10t0406400-00
Chr10	irgsp1_rep	CDS	13897342	13897455	.	-	0	Parent=Os10t0406400-00
Chr10	irgsp1_rep	CDS	13897059	13897258	.	-	0	Parent=Os10t0406400-00
Chr10	irgsp1_rep	CDS	13896774	13896971	.	-	1	Parent=Os10t0406400-00
Chr10	irgsp1_rep	CDS	13896478	13896640	.	-	1	Parent=Os10t0406400-00
Chr10	irgsp1_rep	three_prime_UTR	13896201	13896477	.	-	.	Parent=Os10t0406400-00
Chr10	irgsp1_rep	mRNA	13896593	13897513	.	+	.	ID=Os10t0406501-00;Name=Os10t0406501-00;Locus_id=Os10g0406501;Note=Non-protein coding transcript.;Transcript_evidence=EU946219 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0406501-00
Chr10	irgsp1_rep	exon	13896593	13897513	.	+	.	Parent=Os10t0406501-00
Chr10	irgsp1_rep	mRNA	13905198	13906597	.	-	.	ID=Os10t0406600-01;Name=Os10t0406600-01;Locus_id=Os10g0406600;Note=Complex 1 LYR protein family protein.;Transcript_evidence=AK241635 (DDBJ%2C Best hit);ORF_evidence=NP_001147354.1 (RefSeq);InterPro=Complex 1 LYR protein (IPR008011);NIAS_FLcDNA=J065188E21;TENOR=Os10t0406600-01;KEGG=Os10t0406600-01
Chr10	irgsp1_rep	five_prime_UTR	13906470	13906597	.	-	.	Parent=Os10t0406600-01
Chr10	irgsp1_rep	five_prime_UTR	13905561	13905671	.	-	.	Parent=Os10t0406600-01
Chr10	irgsp1_rep	CDS	13905288	13905560	.	-	0	Parent=Os10t0406600-01
Chr10	irgsp1_rep	three_prime_UTR	13905198	13905287	.	-	.	Parent=Os10t0406600-01
Chr10	irgsp1_rep	mRNA	13908015	13912718	.	+	.	ID=Os10t0406701-01;Name=Os10t0406701-01;Locus_id=Os10g0406701;Note=Conserved hypothetical protein.;Transcript_evidence=AK288631 (DDBJ%2C Best hit);ORF_evidence=Q6H7Q0 (UniProt);NIAS_FLcDNA=J090055C12;TENOR=Os10t0406701-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	13908015	13911174	.	+	.	Parent=Os10t0406701-01
Chr10	irgsp1_rep	CDS	13911175	13911282	.	+	0	Parent=Os10t0406701-01
Chr10	irgsp1_rep	three_prime_UTR	13911283	13912718	.	+	.	Parent=Os10t0406701-01
Chr10	irgsp1_rep	mRNA	13919961	13925636	.	+	.	ID=Os10t0406800-01;Name=Os10t0406800-01;Locus_id=Os10g0406800;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK065200 (DDBJ%2C Best hit),AK065034 (DDBJ%2C Best hit);ORF_evidence=B4FK90 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),Uncharacterised domain UPF0507 (IPR007205),Uncharacterised domain UPF0507%2C C-terminal (IPR007206),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013002E22,J013001H04;TENOR=Os10t0406800-01
Chr10	irgsp1_rep	five_prime_UTR	13919961	13920016	.	+	.	Parent=Os10t0406800-01
Chr10	irgsp1_rep	CDS	13920017	13920070	.	+	0	Parent=Os10t0406800-01
Chr10	irgsp1_rep	CDS	13920171	13920509	.	+	0	Parent=Os10t0406800-01
Chr10	irgsp1_rep	CDS	13921698	13921776	.	+	0	Parent=Os10t0406800-01
Chr10	irgsp1_rep	CDS	13922169	13922317	.	+	2	Parent=Os10t0406800-01
Chr10	irgsp1_rep	CDS	13922860	13922973	.	+	0	Parent=Os10t0406800-01
Chr10	irgsp1_rep	CDS	13923502	13923633	.	+	0	Parent=Os10t0406800-01
Chr10	irgsp1_rep	CDS	13924449	13924562	.	+	0	Parent=Os10t0406800-01
Chr10	irgsp1_rep	CDS	13925334	13925390	.	+	0	Parent=Os10t0406800-01
Chr10	irgsp1_rep	three_prime_UTR	13925391	13925636	.	+	.	Parent=Os10t0406800-01
Chr10	irgsp1_rep	mRNA	13928306	13929601	.	+	.	ID=Os10t0406900-00;Name=Os10t0406900-00;Locus_id=Os10g0406900;Note=Hypothetical conserved gene.;Transcript_evidence=AK334279 (DDBJ);ORF_evidence=Q948I0 (UniProt);TENOR=Os10t0406900-00;KEGG=Os10t0406900-00
Chr10	irgsp1_rep	CDS	13928306	13929601	.	+	0	Parent=Os10t0406900-00
Chr10	irgsp1_rep	mRNA	13932964	13935275	.	-	.	ID=Os10t0407000-01;Name=Os10t0407000-01;Locus_id=Os10g0407000;CGSNL Gene Symbol=PME29;CGSNL Gene Name=PECTIN METHYLESTERASE 29;Oryzabase Gene Symbol Synonym(s)=OsPME29;Oryzabase Gene Name Synonym(s)=pectin methylesterase 29;Note=Pectin lyase fold/virulence factor domain containing protein.;Transcript_evidence=AK101494 (DDBJ%2C Best hit);ORF_evidence=NP_001151351.1 (RefSeq);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=J033043C06;Oryzabase=13193;Expression=AK101494;TENOR=Os10t0407000-01;KEGG=Os10t0407000-01
Chr10	irgsp1_rep	five_prime_UTR	13935222	13935275	.	-	.	Parent=Os10t0407000-01
Chr10	irgsp1_rep	CDS	13934919	13935221	.	-	0	Parent=Os10t0407000-01
Chr10	irgsp1_rep	CDS	13934195	13934299	.	-	0	Parent=Os10t0407000-01
Chr10	irgsp1_rep	CDS	13934004	13934081	.	-	0	Parent=Os10t0407000-01
Chr10	irgsp1_rep	CDS	13933729	13933916	.	-	0	Parent=Os10t0407000-01
Chr10	irgsp1_rep	CDS	13933385	13933558	.	-	1	Parent=Os10t0407000-01
Chr10	irgsp1_rep	CDS	13933100	13933262	.	-	1	Parent=Os10t0407000-01
Chr10	irgsp1_rep	three_prime_UTR	13932964	13933099	.	-	.	Parent=Os10t0407000-01
Chr10	irgsp1_rep	mRNA	13937581	13939572	.	-	.	ID=Os10t0407100-01;Name=Os10t0407100-01;Locus_id=Os10g0407100;Note=Ribosomal protein L32p domain containing protein.;Transcript_evidence=AK070968 (DDBJ%2C Best hit);ORF_evidence=NP_001148673.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: large ribosomal subunit (GO:0015934),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L32p (IPR002677),Ribosomal protein%2C zinc-binding domain (IPR011332);NIAS_FLcDNA=J023070G01;Expression=AK070968;TENOR=Os10t0407100-01;KEGG=Os10t0407100-01
Chr10	irgsp1_rep	five_prime_UTR	13939456	13939572	.	-	.	Parent=Os10t0407100-01
Chr10	irgsp1_rep	CDS	13939255	13939455	.	-	0	Parent=Os10t0407100-01
Chr10	irgsp1_rep	CDS	13938667	13938740	.	-	0	Parent=Os10t0407100-01
Chr10	irgsp1_rep	CDS	13937804	13937882	.	-	1	Parent=Os10t0407100-01
Chr10	irgsp1_rep	three_prime_UTR	13937581	13937803	.	-	.	Parent=Os10t0407100-01
Chr10	irgsp1_rep	mRNA	13937547	13939501	.	-	.	ID=Os10t0407100-02;Name=Os10t0407100-02;Locus_id=Os10g0407100;Note=Ribosomal protein L32p domain containing protein.;Transcript_evidence=AK066741 (DDBJ%2C Best hit);ORF_evidence=NP_001148673.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: large ribosomal subunit (GO:0015934),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L32p (IPR002677),Ribosomal protein%2C zinc-binding domain (IPR011332);NIAS_FLcDNA=J013083M02;Expression=AK066741;TENOR=Os10t0407100-02;KEGG=Os10t0407100-02
Chr10	irgsp1_rep	five_prime_UTR	13939456	13939501	.	-	.	Parent=Os10t0407100-02
Chr10	irgsp1_rep	CDS	13939255	13939455	.	-	0	Parent=Os10t0407100-02
Chr10	irgsp1_rep	CDS	13938667	13938740	.	-	0	Parent=Os10t0407100-02
Chr10	irgsp1_rep	CDS	13937804	13937882	.	-	1	Parent=Os10t0407100-02
Chr10	irgsp1_rep	three_prime_UTR	13937547	13937803	.	-	.	Parent=Os10t0407100-02
Chr10	irgsp1_rep	mRNA	13940043	13941101	.	-	.	ID=Os10t0407200-01;Name=Os10t0407200-01;Locus_id=Os10g0407200;Note=Protein of unknown function DUF962 family protein.;Transcript_evidence=AK101309 (DDBJ%2C Best hit);ORF_evidence=Q948H7 (UniProt);InterPro=Protein of unknown function DUF962 (IPR009305);NIAS_FLcDNA=J033033N23;Expression=AK101309;TENOR=Os10t0407200-01;KEGG=Os10t0407200-01
Chr10	irgsp1_rep	five_prime_UTR	13941053	13941101	.	-	.	Parent=Os10t0407200-01
Chr10	irgsp1_rep	CDS	13940627	13941052	.	-	0	Parent=Os10t0407200-01
Chr10	irgsp1_rep	CDS	13940342	13940521	.	-	0	Parent=Os10t0407200-01
Chr10	irgsp1_rep	three_prime_UTR	13940043	13940341	.	-	.	Parent=Os10t0407200-01
Chr10	irgsp1_rep	mRNA	13946197	13951550	.	+	.	ID=Os10t0407400-01;Name=Os10t0407400-01;Locus_id=Os10g0407400;Note=Hypothetical conserved gene.;Transcript_evidence=AK243498 (DDBJ%2C Best hit);ORF_evidence=Q7XET9 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: exonuclease activity (GO:0004527);InterPro=Exonuclease (IPR006055),Ribonuclease H-like (IPR012337),Exonuclease%2C RNase T/DNA polymerase III (IPR013520);NIAS_FLcDNA=J100074F07;TENOR=Os10t0407400-01;KEGG=Os10t0407400-01
Chr10	irgsp1_rep	five_prime_UTR	13946197	13946216	.	+	.	Parent=Os10t0407400-01
Chr10	irgsp1_rep	CDS	13946217	13946547	.	+	0	Parent=Os10t0407400-01
Chr10	irgsp1_rep	CDS	13947165	13947322	.	+	2	Parent=Os10t0407400-01
Chr10	irgsp1_rep	CDS	13948303	13948349	.	+	0	Parent=Os10t0407400-01
Chr10	irgsp1_rep	CDS	13949125	13949188	.	+	1	Parent=Os10t0407400-01
Chr10	irgsp1_rep	CDS	13950102	13950550	.	+	0	Parent=Os10t0407400-01
Chr10	irgsp1_rep	CDS	13950925	13951159	.	+	1	Parent=Os10t0407400-01
Chr10	irgsp1_rep	three_prime_UTR	13951160	13951550	.	+	.	Parent=Os10t0407400-01
Chr10	irgsp1_rep	mRNA	13946248	13951159	.	-	.	ID=Os10t0407450-00;Name=Os10t0407450-00;Locus_id=Os10g0407450;Note=Hypothetical protein.;Transcript_evidence=tplb0049m02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0407450-00
Chr10	irgsp1_rep	five_prime_UTR	13950902	13951159	.	-	.	Parent=Os10t0407450-00
Chr10	irgsp1_rep	five_prime_UTR	13950266	13950534	.	-	.	Parent=Os10t0407450-00
Chr10	irgsp1_rep	five_prime_UTR	13950121	13950210	.	-	.	Parent=Os10t0407450-00
Chr10	irgsp1_rep	five_prime_UTR	13949101	13949449	.	-	.	Parent=Os10t0407450-00
Chr10	irgsp1_rep	five_prime_UTR	13947163	13947348	.	-	.	Parent=Os10t0407450-00
Chr10	irgsp1_rep	five_prime_UTR	13946531	13946540	.	-	.	Parent=Os10t0407450-00
Chr10	irgsp1_rep	CDS	13946248	13946530	.	-	0	Parent=Os10t0407450-00
Chr10	irgsp1_rep	mRNA	13954232	13958017	.	+	.	ID=Os10t0407500-00;Name=Os10t0407500-00;Locus_id=Os10g0407500;Note=Similar to exonuclease.;Transcript_evidence=EU957242 (DDBJ);ORF_evidence=NP_001148000.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: exonuclease activity (GO:0004527);InterPro=Exonuclease (IPR006055),Ribonuclease H-like (IPR012337),Exonuclease%2C RNase T/DNA polymerase III (IPR013520);TENOR=Os10t0407500-00;KEGG=Os10t0407500-00
Chr10	irgsp1_rep	five_prime_UTR	13954232	13954484	.	+	.	Parent=Os10t0407500-00
Chr10	irgsp1_rep	CDS	13954485	13954824	.	+	0	Parent=Os10t0407500-00
Chr10	irgsp1_rep	CDS	13955379	13955536	.	+	2	Parent=Os10t0407500-00
Chr10	irgsp1_rep	CDS	13955738	13955784	.	+	0	Parent=Os10t0407500-00
Chr10	irgsp1_rep	CDS	13956422	13956485	.	+	1	Parent=Os10t0407500-00
Chr10	irgsp1_rep	CDS	13956907	13957544	.	+	0	Parent=Os10t0407500-00
Chr10	irgsp1_rep	CDS	13957635	13957869	.	+	1	Parent=Os10t0407500-00
Chr10	irgsp1_rep	three_prime_UTR	13957870	13958017	.	+	.	Parent=Os10t0407500-00
Chr10	irgsp1_rep	mRNA	13954300	13957925	.	-	.	ID=Os10t0407600-00;Name=Os10t0407600-00;Locus_id=Os10g0407600;Note=Hypothetical protein.;Transcript_evidence=tplb0049m02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0407600-00
Chr10	irgsp1_rep	five_prime_UTR	13957617	13957925	.	-	.	Parent=Os10t0407600-00
Chr10	irgsp1_rep	five_prime_UTR	13957242	13957528	.	-	.	Parent=Os10t0407600-00
Chr10	irgsp1_rep	CDS	13956905	13957241	.	-	0	Parent=Os10t0407600-00
Chr10	irgsp1_rep	CDS	13956480	13956481	.	-	2	Parent=Os10t0407600-00
Chr10	irgsp1_rep	three_prime_UTR	13956409	13956479	.	-	.	Parent=Os10t0407600-00
Chr10	irgsp1_rep	three_prime_UTR	13955361	13955567	.	-	.	Parent=Os10t0407600-00
Chr10	irgsp1_rep	three_prime_UTR	13954300	13954807	.	-	.	Parent=Os10t0407600-00
Chr10	irgsp1_rep	mRNA	14095096	14102226	.	+	.	ID=Os10t0408700-01;Name=Os10t0408700-01;Locus_id=Os10g0408700;Note=Similar to GAMYB-binding protein (Fragment).;Transcript_evidence=AK068095 (DDBJ%2C Best hit);ORF_evidence=B4F8Y6 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J013135P11;Expression=AK068095;TENOR=Os10t0408700-01;KEGG=Os10t0408700-01
Chr10	irgsp1_rep	five_prime_UTR	14095096	14095667	.	+	.	Parent=Os10t0408700-01
Chr10	irgsp1_rep	CDS	14095668	14095898	.	+	0	Parent=Os10t0408700-01
Chr10	irgsp1_rep	CDS	14096023	14096028	.	+	0	Parent=Os10t0408700-01
Chr10	irgsp1_rep	three_prime_UTR	14096029	14096841	.	+	.	Parent=Os10t0408700-01
Chr10	irgsp1_rep	three_prime_UTR	14096928	14097055	.	+	.	Parent=Os10t0408700-01
Chr10	irgsp1_rep	three_prime_UTR	14097217	14097311	.	+	.	Parent=Os10t0408700-01
Chr10	irgsp1_rep	three_prime_UTR	14097635	14097719	.	+	.	Parent=Os10t0408700-01
Chr10	irgsp1_rep	three_prime_UTR	14097808	14097858	.	+	.	Parent=Os10t0408700-01
Chr10	irgsp1_rep	three_prime_UTR	14097969	14098031	.	+	.	Parent=Os10t0408700-01
Chr10	irgsp1_rep	three_prime_UTR	14098129	14098173	.	+	.	Parent=Os10t0408700-01
Chr10	irgsp1_rep	three_prime_UTR	14099292	14099402	.	+	.	Parent=Os10t0408700-01
Chr10	irgsp1_rep	three_prime_UTR	14100386	14100498	.	+	.	Parent=Os10t0408700-01
Chr10	irgsp1_rep	three_prime_UTR	14100688	14100781	.	+	.	Parent=Os10t0408700-01
Chr10	irgsp1_rep	three_prime_UTR	14101370	14101440	.	+	.	Parent=Os10t0408700-01
Chr10	irgsp1_rep	three_prime_UTR	14102191	14102226	.	+	.	Parent=Os10t0408700-01
Chr10	irgsp1_rep	mRNA	14095112	14096551	.	+	.	ID=Os10t0408700-02;Name=Os10t0408700-02;Locus_id=Os10g0408700;Note=Similar to GAMYB-binding protein (Fragment).;Transcript_evidence=AK103325 (DDBJ%2C Best hit);ORF_evidence=B4F8Y6 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J033125K21;Expression=AK103325;TENOR=Os10t0408700-02;KEGG=Os10t0408700-02
Chr10	irgsp1_rep	five_prime_UTR	14095112	14095667	.	+	.	Parent=Os10t0408700-02
Chr10	irgsp1_rep	CDS	14095668	14095898	.	+	0	Parent=Os10t0408700-02
Chr10	irgsp1_rep	CDS	14096023	14096028	.	+	0	Parent=Os10t0408700-02
Chr10	irgsp1_rep	three_prime_UTR	14096029	14096551	.	+	.	Parent=Os10t0408700-02
Chr10	irgsp1_rep	mRNA	14096636	14099891	.	+	.	ID=Os10t0408700-03;Name=Os10t0408700-03;Locus_id=Os10g0408700;Note=Hypothetical conserved gene.;Transcript_evidence=AK106558 (DDBJ%2C Best hit);ORF_evidence=Q7XET0 (UniProt);NIAS_FLcDNA=002-110-A01;Expression=AK106558;TENOR=Os10t0408700-03;KEGG=Os10t0408700-03
Chr10	irgsp1_rep	five_prime_UTR	14096636	14096839	.	+	.	Parent=Os10t0408700-03
Chr10	irgsp1_rep	CDS	14096840	14096841	.	+	0	Parent=Os10t0408700-03
Chr10	irgsp1_rep	CDS	14096928	14097055	.	+	1	Parent=Os10t0408700-03
Chr10	irgsp1_rep	CDS	14097217	14097311	.	+	2	Parent=Os10t0408700-03
Chr10	irgsp1_rep	CDS	14097635	14097719	.	+	0	Parent=Os10t0408700-03
Chr10	irgsp1_rep	CDS	14097808	14097812	.	+	2	Parent=Os10t0408700-03
Chr10	irgsp1_rep	three_prime_UTR	14097813	14099891	.	+	.	Parent=Os10t0408700-03
Chr10	irgsp1_rep	mRNA	14101369	14106326	.	+	.	ID=Os10t0408700-04;Name=Os10t0408700-04;Locus_id=Os10g0408700;Note=Hypothetical conserved gene.;Transcript_evidence=AK058403 (DDBJ%2C Best hit);ORF_evidence=B9F663 (UniProt);NIAS_FLcDNA=001-015-B08;Expression=AK058403;TENOR=Os10t0408700-04;KEGG=Os10t0408700-04
Chr10	irgsp1_rep	five_prime_UTR	14101369	14101407	.	+	.	Parent=Os10t0408700-04
Chr10	irgsp1_rep	CDS	14101408	14101440	.	+	0	Parent=Os10t0408700-04
Chr10	irgsp1_rep	CDS	14102191	14102285	.	+	0	Parent=Os10t0408700-04
Chr10	irgsp1_rep	CDS	14102891	14102968	.	+	1	Parent=Os10t0408700-04
Chr10	irgsp1_rep	CDS	14103360	14103369	.	+	1	Parent=Os10t0408700-04
Chr10	irgsp1_rep	three_prime_UTR	14103370	14103752	.	+	.	Parent=Os10t0408700-04
Chr10	irgsp1_rep	three_prime_UTR	14104347	14104419	.	+	.	Parent=Os10t0408700-04
Chr10	irgsp1_rep	three_prime_UTR	14105968	14106326	.	+	.	Parent=Os10t0408700-04
Chr10	irgsp1_rep	mRNA	14171332	14172873	.	-	.	ID=Os10t0409400-01;Name=Os10t0409400-01;Locus_id=Os10g0409400;RAP-DB Gene Symbol Synonym(s)=RD22%2C OsBURP16;RAP-DB Gene Name Synonym(s)=polygalacturonase isoenzyme 1 beta subunit%2C BURP domain-containing protein 16%2C beta subunit of polygalacturonase 1%2C polygalacturonase 1 beta subunit%2C non-catalytic PG1beta subunit;Oryzabase Gene Symbol Synonym(s)=OsRD22%2C RD22%2C OsBURP16%2C BURP16;Oryzabase Gene Name Synonym(s)=polygalacturonase isoenzyme 1 beta subunit%2C BURP domain-containing protein 16%2C beta subunit of polygalacturonase 1%2C polygalacturonase 1 beta subunit%2C non-catalytic PG1beta subunit;Note=beta subunit of polygalacturonase 1%2C Abiotic stress response;Transcript_evidence=AK120091;ORF_evidence=Q7XES5;InterPro=BURP domain (IPR004873);NIAS_FLcDNA=J013021F05;Manual Curation=February 10%2C 2016;Literature_PMID=24237159,19363683;Oryzabase=11217;Expression=AK120091;TENOR=Os10t0409400-01;KEGG=Os10t0409400-01
Chr10	irgsp1_rep	five_prime_UTR	14172837	14172873	.	-	.	Parent=Os10t0409400-01
Chr10	irgsp1_rep	CDS	14172107	14172836	.	-	0	Parent=Os10t0409400-01
Chr10	irgsp1_rep	CDS	14171480	14171784	.	-	2	Parent=Os10t0409400-01
Chr10	irgsp1_rep	three_prime_UTR	14171332	14171479	.	-	.	Parent=Os10t0409400-01
Chr10	irgsp1_rep	mRNA	14190128	14194064	.	+	.	ID=Os10t0409566-01;Name=Os10t0409566-01;Locus_id=Os10g0409566;Note=Hypothetical gene.;Transcript_evidence=AK066654 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J013069H17;Expression=AK066654;TENOR=Os10t0409566-01;KEGG=Os10t0409566-01
Chr10	irgsp1_rep	CDS	14190128	14190907	.	+	0	Parent=Os10t0409566-01
Chr10	irgsp1_rep	three_prime_UTR	14190908	14194064	.	+	.	Parent=Os10t0409566-01
Chr10	irgsp1_rep	mRNA	14228138	14231920	.	-	.	ID=Os10t0409900-01;Name=Os10t0409900-01;Locus_id=Os10g0409900;Oryzabase Gene Symbol Synonym(s)=OsFbox553%2C Os_F0250;Oryzabase Gene Name Synonym(s)=F-box protein 553;Note=Kelch-type beta propeller domain containing protein.;Transcript_evidence=AK068671 (DDBJ%2C Best hit);ORF_evidence=B6U1Z3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Kelch repeat type 1 (IPR006652),Galactose oxidase%2C beta-propeller (IPR015916),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013158J20;Oryzabase=17322;Expression=AK068671;TENOR=Os10t0409900-01;KEGG=Os10t0409900-01
Chr10	irgsp1_rep	five_prime_UTR	14231831	14231920	.	-	.	Parent=Os10t0409900-01
Chr10	irgsp1_rep	CDS	14231753	14231830	.	-	0	Parent=Os10t0409900-01
Chr10	irgsp1_rep	CDS	14228812	14230062	.	-	0	Parent=Os10t0409900-01
Chr10	irgsp1_rep	three_prime_UTR	14228138	14228811	.	-	.	Parent=Os10t0409900-01
Chr10	irgsp1_rep	mRNA	14228200	14229822	.	-	.	ID=Os10t0409900-02;Name=Os10t0409900-02;Locus_id=Os10g0409900;Oryzabase Gene Symbol Synonym(s)=OsFbox553%2C Os_F0250;Oryzabase Gene Name Synonym(s)=F-box protein 553;Note=Similar to Kelch-motif containing protein (Fragment).;Transcript_evidence=AK058303 (DDBJ%2C Best hit);ORF_evidence=A0SHK1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Kelch repeat type 1 (IPR006652),Galactose oxidase%2C beta-propeller (IPR015916);NIAS_FLcDNA=001-013-G06;Oryzabase=17322;Expression=AK058303;TENOR=Os10t0409900-02;KEGG=Os10t0409900-02
Chr10	irgsp1_rep	CDS	14228812	14229822	.	-	0	Parent=Os10t0409900-02
Chr10	irgsp1_rep	three_prime_UTR	14228200	14228811	.	-	.	Parent=Os10t0409900-02
Chr10	irgsp1_rep	mRNA	14237492	14239695	.	+	.	ID=Os10t0410100-01;Name=Os10t0410100-01;Locus_id=Os10g0410100;Note=N-6 adenine-specific DNA methylase%2C conserved site domain containing protein.;Transcript_evidence=AK109287 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-188-C04;Expression=AK109287;TENOR=Os10t0410100-01;KEGG=Os10t0410100-01
Chr10	irgsp1_rep	five_prime_UTR	14237492	14237681	.	+	.	Parent=Os10t0410100-01
Chr10	irgsp1_rep	five_prime_UTR	14237766	14237781	.	+	.	Parent=Os10t0410100-01
Chr10	irgsp1_rep	CDS	14237782	14237928	.	+	0	Parent=Os10t0410100-01
Chr10	irgsp1_rep	CDS	14239205	14239381	.	+	0	Parent=Os10t0410100-01
Chr10	irgsp1_rep	three_prime_UTR	14239382	14239695	.	+	.	Parent=Os10t0410100-01
Chr10	irgsp1_rep	mRNA	14255731	14256060	.	-	.	ID=Os10t0410350-00;Name=Os10t0410350-00;Locus_id=Os10g0410350;Note=Non-protein coding transcript.;Transcript_evidence=EU950588 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0410350-00
Chr10	irgsp1_rep	exon	14255731	14256060	.	-	.	Parent=Os10t0410350-00
Chr10	irgsp1_rep	mRNA	14255770	14256787	.	+	.	ID=Os10t0410600-01;Name=Os10t0410600-01;Locus_id=Os10g0410600;Oryzabase Gene Symbol Synonym(s)=OsPP112%2C PP112%2C OsPP2Ac-4%2C PP2Ac-4;Oryzabase Gene Name Synonym(s)=Protein phosphatase 112%2C phosphatase 2A isoform 4;Note=Similar to Serine/threonine protein phosphatase.;Transcript_evidence=AK109250 (DDBJ%2C Best hit);ORF_evidence=B7EPC1 (UniProt);NIAS_FLcDNA=002-156-H05;Oryzabase=18654;Expression=AK109250;TENOR=Os10t0410600-01;KEGG=Os10t0410600-01 (EC:3.1.3.16)
Chr10	irgsp1_rep	five_prime_UTR	14255770	14255918	.	+	.	Parent=Os10t0410600-01
Chr10	irgsp1_rep	CDS	14255919	14256014	.	+	0	Parent=Os10t0410600-01
Chr10	irgsp1_rep	CDS	14256467	14256568	.	+	0	Parent=Os10t0410600-01
Chr10	irgsp1_rep	three_prime_UTR	14256569	14256787	.	+	.	Parent=Os10t0410600-01
Chr10	irgsp1_rep	mRNA	14255800	14260623	.	+	.	ID=Os10t0410600-02;Name=Os10t0410600-02;Locus_id=Os10g0410600;Oryzabase Gene Symbol Synonym(s)=OsPP112%2C PP112%2C OsPP2Ac-4%2C PP2Ac-4;Oryzabase Gene Name Synonym(s)=Protein phosphatase 112%2C phosphatase 2A isoform 4;Note=Similar to Phosphoprotein phosphatase 2A isoform 4.;Transcript_evidence=AK099604 (DDBJ%2C Best hit);ORF_evidence=A3C4N5 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Metallophosphoesterase domain (IPR004843),Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (IPR006186);NIAS_FLcDNA=J013047L01;Oryzabase=18654;Expression=AK099604;TENOR=Os10t0410600-02;KEGG=Os10t0410600-02 (EC:3.1.3.16)
Chr10	irgsp1_rep	five_prime_UTR	14255800	14255918	.	+	.	Parent=Os10t0410600-02
Chr10	irgsp1_rep	CDS	14255919	14256014	.	+	0	Parent=Os10t0410600-02
Chr10	irgsp1_rep	CDS	14256467	14256523	.	+	0	Parent=Os10t0410600-02
Chr10	irgsp1_rep	CDS	14257623	14257706	.	+	0	Parent=Os10t0410600-02
Chr10	irgsp1_rep	CDS	14257804	14257875	.	+	0	Parent=Os10t0410600-02
Chr10	irgsp1_rep	CDS	14258118	14258189	.	+	0	Parent=Os10t0410600-02
Chr10	irgsp1_rep	CDS	14258393	14258433	.	+	0	Parent=Os10t0410600-02
Chr10	irgsp1_rep	CDS	14258604	14258670	.	+	1	Parent=Os10t0410600-02
Chr10	irgsp1_rep	CDS	14259341	14259532	.	+	0	Parent=Os10t0410600-02
Chr10	irgsp1_rep	CDS	14259622	14259711	.	+	0	Parent=Os10t0410600-02
Chr10	irgsp1_rep	CDS	14260050	14260157	.	+	0	Parent=Os10t0410600-02
Chr10	irgsp1_rep	CDS	14260397	14260462	.	+	0	Parent=Os10t0410600-02
Chr10	irgsp1_rep	three_prime_UTR	14260463	14260623	.	+	.	Parent=Os10t0410600-02
Chr10	irgsp1_rep	mRNA	14258604	14260472	.	-	.	ID=Os10t0410650-00;Name=Os10t0410650-00;Locus_id=Os10g0410650;Note=Hypothetical gene.;Transcript_evidence=BT018461 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0410650-00;KEGG=Os10t0410650-00
Chr10	irgsp1_rep	five_prime_UTR	14260472	14260472	.	-	.	Parent=Os10t0410650-00
Chr10	irgsp1_rep	CDS	14260387	14260471	.	-	0	Parent=Os10t0410650-00
Chr10	irgsp1_rep	CDS	14260041	14260147	.	-	2	Parent=Os10t0410650-00
Chr10	irgsp1_rep	CDS	14259678	14259701	.	-	0	Parent=Os10t0410650-00
Chr10	irgsp1_rep	three_prime_UTR	14259608	14259677	.	-	.	Parent=Os10t0410650-00
Chr10	irgsp1_rep	three_prime_UTR	14259344	14259521	.	-	.	Parent=Os10t0410650-00
Chr10	irgsp1_rep	three_prime_UTR	14258604	14258673	.	-	.	Parent=Os10t0410650-00
Chr10	irgsp1_rep	mRNA	14261221	14263873	.	-	.	ID=Os10t0410700-01;Name=Os10t0410700-01;Locus_id=Os10g0410700;Oryzabase Gene Symbol Synonym(s)=OsSET38%2C SDG741;Oryzabase Gene Name Synonym(s)=SET protein 38;Note=Similar to SET domain protein 123.;Transcript_evidence=AK111981 (DDBJ%2C Best hit),AK111906 (DDBJ%2C Best hit);ORF_evidence=NP_001105199.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=SET domain (IPR001214);NIAS_FLcDNA=001-009-E07,J033058P06;Oryzabase=13401;TENOR=Os10t0410700-01
Chr10	irgsp1_rep	five_prime_UTR	14263829	14263873	.	-	.	Parent=Os10t0410700-01
Chr10	irgsp1_rep	CDS	14263652	14263828	.	-	0	Parent=Os10t0410700-01
Chr10	irgsp1_rep	CDS	14263449	14263544	.	-	0	Parent=Os10t0410700-01
Chr10	irgsp1_rep	CDS	14263045	14263100	.	-	0	Parent=Os10t0410700-01
Chr10	irgsp1_rep	CDS	14262743	14262869	.	-	1	Parent=Os10t0410700-01
Chr10	irgsp1_rep	CDS	14262561	14262630	.	-	0	Parent=Os10t0410700-01
Chr10	irgsp1_rep	CDS	14262233	14262412	.	-	2	Parent=Os10t0410700-01
Chr10	irgsp1_rep	CDS	14261769	14261840	.	-	2	Parent=Os10t0410700-01
Chr10	irgsp1_rep	CDS	14261516	14261634	.	-	2	Parent=Os10t0410700-01
Chr10	irgsp1_rep	three_prime_UTR	14261221	14261515	.	-	.	Parent=Os10t0410700-01
Chr10	irgsp1_rep	mRNA	14270663	14274584	.	+	.	ID=Os10t0410750-00;Name=Os10t0410750-00;Locus_id=Os10g0410750;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=EU975108 (DDBJ);ORF_evidence=XP_002450423.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os10t0410750-00
Chr10	irgsp1_rep	five_prime_UTR	14270663	14270706	.	+	.	Parent=Os10t0410750-00
Chr10	irgsp1_rep	CDS	14270707	14270895	.	+	0	Parent=Os10t0410750-00
Chr10	irgsp1_rep	CDS	14273476	14273737	.	+	0	Parent=Os10t0410750-00
Chr10	irgsp1_rep	CDS	14273881	14273939	.	+	2	Parent=Os10t0410750-00
Chr10	irgsp1_rep	three_prime_UTR	14273940	14274106	.	+	.	Parent=Os10t0410750-00
Chr10	irgsp1_rep	three_prime_UTR	14274196	14274349	.	+	.	Parent=Os10t0410750-00
Chr10	irgsp1_rep	three_prime_UTR	14274411	14274584	.	+	.	Parent=Os10t0410750-00
Chr10	irgsp1_rep	mRNA	14278753	14283314	.	+	.	ID=Os10t0410900-01;Name=Os10t0410900-01;Locus_id=Os10g0410900;Note=Conserved hypothetical protein.;Transcript_evidence=AK119279 (DDBJ%2C Best hit);ORF_evidence=Q7XER2 (UniProt);NIAS_FLcDNA=001-130-B12;TENOR=Os10t0410900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	14278753	14279062	.	+	.	Parent=Os10t0410900-01
Chr10	irgsp1_rep	CDS	14279063	14279204	.	+	0	Parent=Os10t0410900-01
Chr10	irgsp1_rep	CDS	14280300	14280376	.	+	2	Parent=Os10t0410900-01
Chr10	irgsp1_rep	three_prime_UTR	14280377	14280513	.	+	.	Parent=Os10t0410900-01
Chr10	irgsp1_rep	three_prime_UTR	14280590	14280704	.	+	.	Parent=Os10t0410900-01
Chr10	irgsp1_rep	three_prime_UTR	14281224	14283314	.	+	.	Parent=Os10t0410900-01
Chr10	irgsp1_rep	mRNA	14289311	14293647	.	-	.	ID=Os10t0411100-00;Name=Os10t0411100-00;Locus_id=Os10g0411100;Note=Protein of unknown function DUF620 domain containing protein.;Transcript_evidence=BT088024 (DDBJ);ORF_evidence=XP_002468447.1 (RefSeq);InterPro=Protein of unknown function DUF620 (IPR006873);TENOR=Os10t0411100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	14292922	14293647	.	-	0	Parent=Os10t0411100-00
Chr10	irgsp1_rep	CDS	14289311	14289931	.	-	0	Parent=Os10t0411100-00
Chr10	irgsp1_rep	mRNA	14289585	14293304	.	+	.	ID=Os10t0411200-00;Name=Os10t0411200-00;Locus_id=Os10g0411200;Note=Hypothetical protein.;Transcript_evidence=BT085554 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0411200-00
Chr10	irgsp1_rep	five_prime_UTR	14289585	14289698	.	+	.	Parent=Os10t0411200-00
Chr10	irgsp1_rep	CDS	14289699	14289885	.	+	0	Parent=Os10t0411200-00
Chr10	irgsp1_rep	CDS	14292957	14293304	.	+	2	Parent=Os10t0411200-00
Chr10	irgsp1_rep	mRNA	14319443	14323361	.	+	.	ID=Os10t0411500-01;Name=Os10t0411500-01;Locus_id=Os10g0411500;Oryzabase Gene Symbol Synonym(s)=OsSTA242;Note=IQ calmodulin-binding region domain containing protein.;Transcript_evidence=AK072572 (DDBJ%2C Best hit);ORF_evidence=B8BGS6 (UniProt);NIAS_FLcDNA=J023127G05;Oryzabase=19511;Expression=AK072572;TENOR=Os10t0411500-01;KEGG=Os10t0411500-01
Chr10	irgsp1_rep	five_prime_UTR	14319443	14319567	.	+	.	Parent=Os10t0411500-01
Chr10	irgsp1_rep	five_prime_UTR	14320000	14320110	.	+	.	Parent=Os10t0411500-01
Chr10	irgsp1_rep	CDS	14320111	14320601	.	+	0	Parent=Os10t0411500-01
Chr10	irgsp1_rep	CDS	14320731	14320845	.	+	1	Parent=Os10t0411500-01
Chr10	irgsp1_rep	CDS	14321074	14321139	.	+	0	Parent=Os10t0411500-01
Chr10	irgsp1_rep	CDS	14321229	14321317	.	+	0	Parent=Os10t0411500-01
Chr10	irgsp1_rep	CDS	14321411	14321501	.	+	1	Parent=Os10t0411500-01
Chr10	irgsp1_rep	CDS	14321620	14321766	.	+	0	Parent=Os10t0411500-01
Chr10	irgsp1_rep	CDS	14321883	14321975	.	+	0	Parent=Os10t0411500-01
Chr10	irgsp1_rep	CDS	14322053	14322154	.	+	0	Parent=Os10t0411500-01
Chr10	irgsp1_rep	CDS	14322265	14323020	.	+	0	Parent=Os10t0411500-01
Chr10	irgsp1_rep	three_prime_UTR	14323021	14323361	.	+	.	Parent=Os10t0411500-01
Chr10	irgsp1_rep	mRNA	14319926	14321570	.	-	.	ID=Os10t0411600-01;Name=Os10t0411600-01;Locus_id=Os10g0411600;Note=Hypothetical protein.;Transcript_evidence=AK108669 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-148-H01;Expression=AK108669;TENOR=Os10t0411600-01;KEGG=Os10t0411600-01
Chr10	irgsp1_rep	five_prime_UTR	14321475	14321570	.	-	.	Parent=Os10t0411600-01
Chr10	irgsp1_rep	CDS	14321070	14321474	.	-	0	Parent=Os10t0411600-01
Chr10	irgsp1_rep	three_prime_UTR	14319926	14321069	.	-	.	Parent=Os10t0411600-01
Chr10	irgsp1_rep	mRNA	14322041	14322867	.	-	.	ID=Os10t0411650-00;Name=Os10t0411650-00;Locus_id=Os10g0411650;Note=Non-protein coding transcript.;Transcript_evidence=EU947431 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0411650-00
Chr10	irgsp1_rep	exon	14322374	14322867	.	-	.	Parent=Os10t0411650-00
Chr10	irgsp1_rep	exon	14322041	14322303	.	-	.	Parent=Os10t0411650-00
Chr10	irgsp1_rep	mRNA	14323590	14324864	.	-	.	ID=Os10t0411700-01;Name=Os10t0411700-01;Locus_id=Os10g0411700;CGSNL Gene Symbol=RPS28;CGSNL Gene Name=RIBOSOMAL PROTEIN S28;Oryzabase Gene Symbol Synonym(s)=OsRPS28;Oryzabase Gene Name Synonym(s)=Ribosomal protein S28%2C ribosomal protein small subunit 28;Note=Similar to S28 ribosomal protein (Fragment).;Transcript_evidence=AK058209 (DDBJ%2C Best hit),AK121099 (DDBJ%2C Best hit);ORF_evidence=Q7X9K4 (UniProt);NIAS_FLcDNA=001-010-B09,J023069E23;Oryzabase=17695;TENOR=Os10t0411700-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	14324786	14324864	.	-	.	Parent=Os10t0411700-01
Chr10	irgsp1_rep	CDS	14324769	14324785	.	-	0	Parent=Os10t0411700-01
Chr10	irgsp1_rep	CDS	14323861	14324059	.	-	1	Parent=Os10t0411700-01
Chr10	irgsp1_rep	three_prime_UTR	14323590	14323860	.	-	.	Parent=Os10t0411700-01
Chr10	irgsp1_rep	mRNA	14326673	14330476	.	-	.	ID=Os10t0411750-01;Name=Os10t0411750-01;Locus_id=Os10g0411750;Note=Hypothetical conserved gene.;Transcript_evidence=AK241834 (DDBJ%2C Best hit);ORF_evidence=Q7XEQ4 (UniProt);InterPro=JNK/Rab-associated protein-1%2C N-terminal (IPR019143);NIAS_FLcDNA=J065213F10;TENOR=Os10t0411750-01;KEGG=Os10t0411750-01
Chr10	irgsp1_rep	five_prime_UTR	14330285	14330476	.	-	.	Parent=Os10t0411750-01
Chr10	irgsp1_rep	CDS	14330213	14330284	.	-	0	Parent=Os10t0411750-01
Chr10	irgsp1_rep	CDS	14329999	14330097	.	-	0	Parent=Os10t0411750-01
Chr10	irgsp1_rep	CDS	14329467	14329581	.	-	0	Parent=Os10t0411750-01
Chr10	irgsp1_rep	CDS	14329094	14329137	.	-	2	Parent=Os10t0411750-01
Chr10	irgsp1_rep	three_prime_UTR	14328963	14329093	.	-	.	Parent=Os10t0411750-01
Chr10	irgsp1_rep	three_prime_UTR	14328786	14328842	.	-	.	Parent=Os10t0411750-01
Chr10	irgsp1_rep	three_prime_UTR	14328469	14328605	.	-	.	Parent=Os10t0411750-01
Chr10	irgsp1_rep	three_prime_UTR	14328318	14328377	.	-	.	Parent=Os10t0411750-01
Chr10	irgsp1_rep	three_prime_UTR	14328155	14328232	.	-	.	Parent=Os10t0411750-01
Chr10	irgsp1_rep	three_prime_UTR	14327910	14327983	.	-	.	Parent=Os10t0411750-01
Chr10	irgsp1_rep	three_prime_UTR	14327757	14327821	.	-	.	Parent=Os10t0411750-01
Chr10	irgsp1_rep	three_prime_UTR	14327325	14327401	.	-	.	Parent=Os10t0411750-01
Chr10	irgsp1_rep	three_prime_UTR	14327151	14327234	.	-	.	Parent=Os10t0411750-01
Chr10	irgsp1_rep	three_prime_UTR	14326673	14327062	.	-	.	Parent=Os10t0411750-01
Chr10	irgsp1_rep	mRNA	14330689	14331424	.	+	.	ID=Os10t0411800-01;Name=Os10t0411800-01;Locus_id=Os10g0411800;Oryzabase Gene Name Synonym(s)=Ribosomal protein S17;Note=Similar to 40S ribosomal protein S17-3.;Transcript_evidence=AK059434 (DDBJ%2C Best hit);ORF_evidence=NP_001149330.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S17e (IPR001210);NIAS_FLcDNA=001-027-F09;Oryzabase=17689;Expression=AK059434;TENOR=Os10t0411800-01;KEGG=Os10t0411800-01
Chr10	irgsp1_rep	five_prime_UTR	14330689	14330785	.	+	.	Parent=Os10t0411800-01
Chr10	irgsp1_rep	CDS	14330786	14331211	.	+	0	Parent=Os10t0411800-01
Chr10	irgsp1_rep	three_prime_UTR	14331212	14331424	.	+	.	Parent=Os10t0411800-01
Chr10	irgsp1_rep	mRNA	14341776	14346096	.	-	.	ID=Os10t0412000-01;Name=Os10t0412000-01;Locus_id=Os10g0412000;Note=ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter family protein.;Transcript_evidence=AK066864 (DDBJ%2C Best hit);ORF_evidence=XP_002314626.1 (RefSeq);GO=Biological Process: cation transport (GO:0006812),Biological Process: phospholipid transport (GO:0015914),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: phospholipid-translocating ATPase activity (GO:0004012),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662);InterPro=ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),ATPase%2C P-type%2C phospholipid-translocating%2C flippase (IPR006539),HAD-like domain (IPR023214),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299);NIAS_FLcDNA=J013085P21;Expression=AK066864;TENOR=Os10t0412000-01;KEGG=Os10t0412000-01 (EC:3.6.3.1)
Chr10	irgsp1_rep	CDS	14346028	14346096	.	-	0	Parent=Os10t0412000-01
Chr10	irgsp1_rep	CDS	14345731	14345944	.	-	0	Parent=Os10t0412000-01
Chr10	irgsp1_rep	CDS	14345161	14345325	.	-	2	Parent=Os10t0412000-01
Chr10	irgsp1_rep	CDS	14344948	14345027	.	-	2	Parent=Os10t0412000-01
Chr10	irgsp1_rep	CDS	14344092	14344331	.	-	0	Parent=Os10t0412000-01
Chr10	irgsp1_rep	CDS	14343461	14343682	.	-	0	Parent=Os10t0412000-01
Chr10	irgsp1_rep	CDS	14343220	14343387	.	-	0	Parent=Os10t0412000-01
Chr10	irgsp1_rep	CDS	14342782	14343144	.	-	0	Parent=Os10t0412000-01
Chr10	irgsp1_rep	CDS	14342579	14342685	.	-	0	Parent=Os10t0412000-01
Chr10	irgsp1_rep	CDS	14342072	14342372	.	-	1	Parent=Os10t0412000-01
Chr10	irgsp1_rep	three_prime_UTR	14341776	14342071	.	-	.	Parent=Os10t0412000-01
Chr10	irgsp1_rep	mRNA	14341810	14343647	.	-	.	ID=Os10t0412000-02;Name=Os10t0412000-02;Locus_id=Os10g0412000;Note=Similar to aminophospholipid ATPase.;Transcript_evidence=AK062158 (DDBJ%2C Best hit);ORF_evidence=XP_002314626.1 (RefSeq);GO=Biological Process: cation transport (GO:0006812),Cellular Component: membrane (GO:0016020),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662);InterPro=ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),HAD-like domain (IPR023214);NIAS_FLcDNA=001-046-A06;Expression=AK062158;TENOR=Os10t0412000-02;KEGG=Os10t0412000-02 (EC:3.6.3.1)
Chr10	irgsp1_rep	five_prime_UTR	14343647	14343647	.	-	.	Parent=Os10t0412000-02
Chr10	irgsp1_rep	CDS	14343461	14343646	.	-	0	Parent=Os10t0412000-02
Chr10	irgsp1_rep	CDS	14343220	14343387	.	-	0	Parent=Os10t0412000-02
Chr10	irgsp1_rep	CDS	14342782	14343144	.	-	0	Parent=Os10t0412000-02
Chr10	irgsp1_rep	CDS	14342579	14342685	.	-	0	Parent=Os10t0412000-02
Chr10	irgsp1_rep	CDS	14342072	14342372	.	-	1	Parent=Os10t0412000-02
Chr10	irgsp1_rep	three_prime_UTR	14341810	14342071	.	-	.	Parent=Os10t0412000-02
Chr10	irgsp1_rep	mRNA	14348848	14353676	.	-	.	ID=Os10t0412050-00;Name=Os10t0412050-00;Locus_id=Os10g0412050;Note=Similar to aminophospholipid ATPase.;Transcript_evidence=BT035338 (DDBJ);ORF_evidence=NP_176191.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: metal ion binding (GO:0046872);InterPro=ATPase%2C P-type%2C ATPase-associated domain (IPR008250),ATPase%2C  P-type%2C cytoplasmic transduction domain A (IPR023300);TENOR=Os10t0412050-00;KEGG=Os10t0412050-00 (EC:3.6.3.1)
Chr10	irgsp1_rep	five_prime_UTR	14353541	14353676	.	-	.	Parent=Os10t0412050-00
Chr10	irgsp1_rep	CDS	14353310	14353540	.	-	0	Parent=Os10t0412050-00
Chr10	irgsp1_rep	CDS	14351928	14351993	.	-	0	Parent=Os10t0412050-00
Chr10	irgsp1_rep	CDS	14351600	14351661	.	-	0	Parent=Os10t0412050-00
Chr10	irgsp1_rep	CDS	14351391	14351472	.	-	1	Parent=Os10t0412050-00
Chr10	irgsp1_rep	CDS	14351181	14351291	.	-	0	Parent=Os10t0412050-00
Chr10	irgsp1_rep	CDS	14350953	14351030	.	-	0	Parent=Os10t0412050-00
Chr10	irgsp1_rep	CDS	14350735	14350831	.	-	0	Parent=Os10t0412050-00
Chr10	irgsp1_rep	CDS	14350486	14350592	.	-	2	Parent=Os10t0412050-00
Chr10	irgsp1_rep	CDS	14348848	14348919	.	-	0	Parent=Os10t0412050-00
Chr10	irgsp1_rep	mRNA	14357065	14362380	.	-	.	ID=Os10t0412100-01;Name=Os10t0412100-01;Locus_id=Os10g0412100;RAP-DB Gene Symbol Synonym(s)=OsCCR4a;RAP-DB Gene Name Synonym(s)=Carbon catabolite repressor 4a;CGSNL Gene Symbol=CCR4A;CGSNL Gene Name=CARBON CATABOLITE REPRESSOR 4A;Oryzabase Gene Symbol Synonym(s)=OsCCR4a;Oryzabase Gene Name Synonym(s)=Carbon catabolite repressor 4a;Note=Carbon catabolite repressor 4%2C Exonuclease-endonuclease-phosphatase (EEP)%2C mRNA deadenylation;Transcript_evidence=AK102338;ORF_evidence=Q338D5;InterPro=Endonuclease/exonuclease/phosphatase (IPR005135);NIAS_FLcDNA=J033091A18;Manual Curation=October 13%2C 2016;Literature_PMID=27714489;Oryzabase=21534;Expression=AK102338;TENOR=Os10t0412100-01;KEGG=Os10t0412100-01 (EC:3.1.-.-)
Chr10	irgsp1_rep	five_prime_UTR	14361957	14362380	.	-	.	Parent=Os10t0412100-01
Chr10	irgsp1_rep	CDS	14361799	14361956	.	-	0	Parent=Os10t0412100-01
Chr10	irgsp1_rep	CDS	14360101	14360857	.	-	1	Parent=Os10t0412100-01
Chr10	irgsp1_rep	CDS	14359667	14359753	.	-	0	Parent=Os10t0412100-01
Chr10	irgsp1_rep	CDS	14359499	14359582	.	-	0	Parent=Os10t0412100-01
Chr10	irgsp1_rep	CDS	14359331	14359417	.	-	0	Parent=Os10t0412100-01
Chr10	irgsp1_rep	CDS	14359157	14359243	.	-	0	Parent=Os10t0412100-01
Chr10	irgsp1_rep	CDS	14358625	14358678	.	-	0	Parent=Os10t0412100-01
Chr10	irgsp1_rep	CDS	14358453	14358544	.	-	0	Parent=Os10t0412100-01
Chr10	irgsp1_rep	CDS	14358250	14358364	.	-	1	Parent=Os10t0412100-01
Chr10	irgsp1_rep	CDS	14358018	14358168	.	-	0	Parent=Os10t0412100-01
Chr10	irgsp1_rep	CDS	14357737	14357882	.	-	2	Parent=Os10t0412100-01
Chr10	irgsp1_rep	three_prime_UTR	14357729	14357736	.	-	.	Parent=Os10t0412100-01
Chr10	irgsp1_rep	three_prime_UTR	14357065	14357358	.	-	.	Parent=Os10t0412100-01
Chr10	irgsp1_rep	mRNA	14357097	14360697	.	-	.	ID=Os10t0412100-02;Name=Os10t0412100-02;Locus_id=Os10g0412100;CGSNL Gene Symbol=CCR4A;CGSNL Gene Name=CARBON CATABOLITE REPRESSOR 4A;Oryzabase Gene Symbol Synonym(s)=OsCCR4a;Oryzabase Gene Name Synonym(s)=Carbon catabolite repressor 4a;Note=Similar to Endonuclease/Exonuclease/phosphatase family protein%2C expressed.;Transcript_evidence=AK102038 (DDBJ%2C Best hit);ORF_evidence=Q10R98 (UniProt);InterPro=Endonuclease/exonuclease/phosphatase (IPR005135);NIAS_FLcDNA=J033081E19;Oryzabase=21534;Expression=AK102038;TENOR=Os10t0412100-02;KEGG=Os10t0412100-02 (EC:3.1.-.-)
Chr10	irgsp1_rep	CDS	14360101	14360697	.	-	0	Parent=Os10t0412100-02
Chr10	irgsp1_rep	CDS	14359667	14359753	.	-	0	Parent=Os10t0412100-02
Chr10	irgsp1_rep	CDS	14359499	14359582	.	-	0	Parent=Os10t0412100-02
Chr10	irgsp1_rep	CDS	14359331	14359417	.	-	0	Parent=Os10t0412100-02
Chr10	irgsp1_rep	CDS	14359157	14359243	.	-	0	Parent=Os10t0412100-02
Chr10	irgsp1_rep	CDS	14358625	14358678	.	-	0	Parent=Os10t0412100-02
Chr10	irgsp1_rep	CDS	14358453	14358544	.	-	0	Parent=Os10t0412100-02
Chr10	irgsp1_rep	CDS	14358250	14358364	.	-	1	Parent=Os10t0412100-02
Chr10	irgsp1_rep	CDS	14358018	14358168	.	-	0	Parent=Os10t0412100-02
Chr10	irgsp1_rep	CDS	14357737	14357882	.	-	2	Parent=Os10t0412100-02
Chr10	irgsp1_rep	three_prime_UTR	14357729	14357736	.	-	.	Parent=Os10t0412100-02
Chr10	irgsp1_rep	three_prime_UTR	14357097	14357358	.	-	.	Parent=Os10t0412100-02
Chr10	irgsp1_rep	mRNA	14357056	14360448	.	-	.	ID=Os10t0412100-03;Name=Os10t0412100-03;Locus_id=Os10g0412100;CGSNL Gene Symbol=CCR4A;CGSNL Gene Name=CARBON CATABOLITE REPRESSOR 4A;Oryzabase Gene Symbol Synonym(s)=OsCCR4a;Oryzabase Gene Name Synonym(s)=Carbon catabolite repressor 4a;Note=Similar to Endonuclease/Exonuclease/phosphatase family protein%2C expressed.;Transcript_evidence=AK105868 (DDBJ%2C Best hit);ORF_evidence=Q10R98 (UniProt);InterPro=Endonuclease/exonuclease/phosphatase (IPR005135);NIAS_FLcDNA=001-204-A09;Oryzabase=21534;Expression=AK105868;TENOR=Os10t0412100-03;KEGG=Os10t0412100-03 (EC:3.1.-.-)
Chr10	irgsp1_rep	CDS	14360101	14360448	.	-	0	Parent=Os10t0412100-03
Chr10	irgsp1_rep	CDS	14359667	14359753	.	-	0	Parent=Os10t0412100-03
Chr10	irgsp1_rep	CDS	14359499	14359582	.	-	0	Parent=Os10t0412100-03
Chr10	irgsp1_rep	CDS	14359331	14359417	.	-	0	Parent=Os10t0412100-03
Chr10	irgsp1_rep	CDS	14359157	14359243	.	-	0	Parent=Os10t0412100-03
Chr10	irgsp1_rep	CDS	14358625	14358678	.	-	0	Parent=Os10t0412100-03
Chr10	irgsp1_rep	CDS	14358453	14358544	.	-	0	Parent=Os10t0412100-03
Chr10	irgsp1_rep	CDS	14358250	14358364	.	-	1	Parent=Os10t0412100-03
Chr10	irgsp1_rep	CDS	14358018	14358168	.	-	0	Parent=Os10t0412100-03
Chr10	irgsp1_rep	CDS	14357737	14357882	.	-	2	Parent=Os10t0412100-03
Chr10	irgsp1_rep	three_prime_UTR	14357729	14357736	.	-	.	Parent=Os10t0412100-03
Chr10	irgsp1_rep	three_prime_UTR	14357056	14357358	.	-	.	Parent=Os10t0412100-03
Chr10	irgsp1_rep	mRNA	14376053	14376881	.	-	.	ID=Os10t0412350-00;Name=Os10t0412350-00;Locus_id=Os10g0412350;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);InterPro=Ribonuclease H1%2C N-terminal (IPR011320);TENOR=Os10t0412350-00
Chr10	irgsp1_rep	five_prime_UTR	14376878	14376881	.	-	.	Parent=Os10t0412350-00
Chr10	irgsp1_rep	CDS	14376053	14376877	.	-	0	Parent=Os10t0412350-00
Chr10	irgsp1_rep	mRNA	14395000	14397752	.	+	.	ID=Os10t0412600-01;Name=Os10t0412600-01;Locus_id=Os10g0412600;Note=Conserved hypothetical protein.;Transcript_evidence=AK101468 (DDBJ%2C Best hit);ORF_evidence=NP_001173874.1 (RefSeq);NIAS_FLcDNA=J033040I24;TENOR=Os10t0412600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	14395000	14396053	.	+	.	Parent=Os10t0412600-01
Chr10	irgsp1_rep	CDS	14396054	14396082	.	+	0	Parent=Os10t0412600-01
Chr10	irgsp1_rep	CDS	14397309	14397480	.	+	1	Parent=Os10t0412600-01
Chr10	irgsp1_rep	three_prime_UTR	14397481	14397752	.	+	.	Parent=Os10t0412600-01
Chr10	irgsp1_rep	mRNA	14399191	14400692	.	-	.	ID=Os10t0412700-01;Name=Os10t0412700-01;Locus_id=Os10g0412700;Note=Thaumatin%2C pathogenesis-related family protein.;Transcript_evidence=AK110572 (DDBJ%2C Best hit);ORF_evidence=B6TZG7 (UniProt);InterPro=Thaumatin%2C pathogenesis-related (IPR001938);NIAS_FLcDNA=002-168-D12;Expression=AK110572;TENOR=Os10t0412700-01;KEGG=Os10t0412700-01
Chr10	irgsp1_rep	five_prime_UTR	14400638	14400692	.	-	.	Parent=Os10t0412700-01
Chr10	irgsp1_rep	CDS	14400571	14400637	.	-	0	Parent=Os10t0412700-01
Chr10	irgsp1_rep	CDS	14399315	14400075	.	-	2	Parent=Os10t0412700-01
Chr10	irgsp1_rep	three_prime_UTR	14399191	14399314	.	-	.	Parent=Os10t0412700-01
Chr10	irgsp1_rep	mRNA	14403026	14407180	.	+	.	ID=Os10t0412800-01;Name=Os10t0412800-01;Locus_id=Os10g0412800;Note=Conserved hypothetical protein.;Transcript_evidence=AK070592 (DDBJ%2C Best hit);ORF_evidence=B8BGT1 (UniProt);NIAS_FLcDNA=J023055H13;TENOR=Os10t0412800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	14403026	14403531	.	+	.	Parent=Os10t0412800-01
Chr10	irgsp1_rep	five_prime_UTR	14403597	14403761	.	+	.	Parent=Os10t0412800-01
Chr10	irgsp1_rep	five_prime_UTR	14404200	14404240	.	+	.	Parent=Os10t0412800-01
Chr10	irgsp1_rep	CDS	14404241	14404361	.	+	0	Parent=Os10t0412800-01
Chr10	irgsp1_rep	CDS	14404929	14405041	.	+	2	Parent=Os10t0412800-01
Chr10	irgsp1_rep	CDS	14405255	14405338	.	+	0	Parent=Os10t0412800-01
Chr10	irgsp1_rep	three_prime_UTR	14405339	14406537	.	+	.	Parent=Os10t0412800-01
Chr10	irgsp1_rep	three_prime_UTR	14406625	14407180	.	+	.	Parent=Os10t0412800-01
Chr10	irgsp1_rep	mRNA	14408001	14409842	.	-	.	ID=Os10t0413101-01;Name=Os10t0413101-01;Locus_id=Os10g0413101;Note=Similar to H0815C01.6 protein.;Transcript_evidence=AK242244 (DDBJ%2C Best hit);ORF_evidence=Q01J90 (UniProt);NIAS_FLcDNA=J075180J19;TENOR=Os10t0413101-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	14408294	14409842	.	-	.	Parent=Os10t0413101-01
Chr10	irgsp1_rep	CDS	14408195	14408293	.	-	0	Parent=Os10t0413101-01
Chr10	irgsp1_rep	three_prime_UTR	14408001	14408194	.	-	.	Parent=Os10t0413101-01
Chr10	irgsp1_rep	mRNA	14423961	14428117	.	+	.	ID=Os10t0413400-00;Name=Os10t0413400-00;Locus_id=Os10g0413400;Oryzabase Gene Symbol Synonym(s)=GPAT;Oryzabase Gene Name Synonym(s)=glycerol-3-phosphate acyltransferase;Note=Similar to Glycerol-3-phosphate acyltransferase 6 (EC 2.3.1.15) (AtGPAT6).;Transcript_evidence=BT039538 (DDBJ);ORF_evidence=NP_001176155.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Phospholipid/glycerol acyltransferase (IPR002123);Oryzabase=21983;TENOR=Os10t0413400-00;KEGG=Os10t0413400-00 (EC:2.3.1.15)
Chr10	irgsp1_rep	CDS	14423961	14424884	.	+	0	Parent=Os10t0413400-00
Chr10	irgsp1_rep	CDS	14427047	14427976	.	+	0	Parent=Os10t0413400-00
Chr10	irgsp1_rep	three_prime_UTR	14427977	14428117	.	+	.	Parent=Os10t0413400-00
Chr10	irgsp1_rep	mRNA	14428613	14432381	.	-	.	ID=Os10t0413500-01;Name=Os10t0413500-01;Locus_id=Os10g0413500;Note=2OG-Fe(II) oxygenase domain containing protein.;Transcript_evidence=AK098975 (DDBJ%2C Best hit),AK061548 (DDBJ%2C Best hit);ORF_evidence=B6TED5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706),Molecular Function: L-ascorbic acid binding (GO:0031418);InterPro=Metridin-like ShK toxin (IPR003582),Oxoglutarate/iron-dependent oxygenase (IPR005123),Prolyl 4-hydroxylase%2C alpha subunit (IPR006620);NIAS_FLcDNA=J013091B02,006-311-A08;Expression=AK098975;TENOR=Os10t0413500-01;KEGG=Os10t0413500-01 (EC:1.14.11.2)
Chr10	irgsp1_rep	five_prime_UTR	14432340	14432381	.	-	.	Parent=Os10t0413500-01
Chr10	irgsp1_rep	CDS	14432182	14432339	.	-	0	Parent=Os10t0413500-01
Chr10	irgsp1_rep	CDS	14432019	14432076	.	-	1	Parent=Os10t0413500-01
Chr10	irgsp1_rep	CDS	14431831	14431935	.	-	0	Parent=Os10t0413500-01
Chr10	irgsp1_rep	CDS	14429701	14429758	.	-	0	Parent=Os10t0413500-01
Chr10	irgsp1_rep	CDS	14429432	14429607	.	-	2	Parent=Os10t0413500-01
Chr10	irgsp1_rep	CDS	14429291	14429351	.	-	0	Parent=Os10t0413500-01
Chr10	irgsp1_rep	CDS	14428771	14429081	.	-	2	Parent=Os10t0413500-01
Chr10	irgsp1_rep	three_prime_UTR	14428613	14428770	.	-	.	Parent=Os10t0413500-01
Chr10	irgsp1_rep	mRNA	14428234	14429762	.	-	.	ID=Os10t0413500-03;Name=Os10t0413500-03;Locus_id=Os10g0413500;Note=Similar to Prolyl 4-hydroxylase.;Transcript_evidence=AK065828 (DDBJ%2C Best hit);ORF_evidence=B6TED5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706),Molecular Function: L-ascorbic acid binding (GO:0031418);InterPro=Metridin-like ShK toxin (IPR003582),Oxoglutarate/iron-dependent oxygenase (IPR005123),Prolyl 4-hydroxylase%2C alpha subunit (IPR006620);NIAS_FLcDNA=J013040G23;Expression=AK065828;TENOR=Os10t0413500-03;KEGG=Os10t0413500-03 (EC:1.14.11.2)
Chr10	irgsp1_rep	five_prime_UTR	14429762	14429762	.	-	.	Parent=Os10t0413500-03
Chr10	irgsp1_rep	CDS	14429701	14429761	.	-	0	Parent=Os10t0413500-03
Chr10	irgsp1_rep	CDS	14429432	14429607	.	-	2	Parent=Os10t0413500-03
Chr10	irgsp1_rep	CDS	14429291	14429351	.	-	0	Parent=Os10t0413500-03
Chr10	irgsp1_rep	CDS	14428771	14429081	.	-	2	Parent=Os10t0413500-03
Chr10	irgsp1_rep	three_prime_UTR	14428234	14428770	.	-	.	Parent=Os10t0413500-03
Chr10	irgsp1_rep	mRNA	14433978	14435281	.	-	.	ID=Os10t0413600-01;Name=Os10t0413600-01;Locus_id=Os10g0413600;RAP-DB Gene Symbol Synonym(s)=OsS40-3;RAP-DB Gene Name Synonym(s)=S40 protein 3;CGSNL Gene Symbol=S40-3;CGSNL Gene Name=S40 PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsS40-3;Oryzabase Gene Name Synonym(s)=S40 protein 3;Note=A member of S40 gene family%2C Leaf senescence;Transcript_evidence=BT038034 (maize);ORF_evidence=Q7XEP0;InterPro=Senescence regulator S40 (IPR007608);Manual Curation=November 8%2C 2019;Literature_PMID=31046677;Oryzabase=22073;Subcellular location=cytoplasm (GO:0005737) [several speckles]
Chr10	irgsp1_rep	five_prime_UTR	14435210	14435281	.	-	.	Parent=Os10t0413600-01
Chr10	irgsp1_rep	CDS	14434451	14435209	.	-	0	Parent=Os10t0413600-01
Chr10	irgsp1_rep	three_prime_UTR	14433978	14434450	.	-	.	Parent=Os10t0413600-01
Chr10	irgsp1_rep	mRNA	14436872	14438849	.	+	.	ID=Os10t0413700-01;Name=Os10t0413700-01;Locus_id=Os10g0413700;CGSNL Gene Symbol=NAC118;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 118;Oryzabase Gene Symbol Synonym(s)=ONAC118;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 118;Note=No apical meristem (NAM) protein domain containing protein.;Transcript_evidence=AK109904 (DDBJ%2C Best hit);ORF_evidence=A2Z779 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=002-149-F12;Oryzabase=15879;Expression=AK109904;TENOR=Os10t0413700-01;KEGG=Os10t0413700-01
Chr10	irgsp1_rep	five_prime_UTR	14436872	14437038	.	+	.	Parent=Os10t0413700-01
Chr10	irgsp1_rep	CDS	14437039	14437246	.	+	0	Parent=Os10t0413700-01
Chr10	irgsp1_rep	CDS	14437384	14437646	.	+	2	Parent=Os10t0413700-01
Chr10	irgsp1_rep	CDS	14437771	14438565	.	+	0	Parent=Os10t0413700-01
Chr10	irgsp1_rep	three_prime_UTR	14438566	14438849	.	+	.	Parent=Os10t0413700-01
Chr10	irgsp1_rep	mRNA	14443785	14445502	.	+	.	ID=Os10t0413900-01;Name=Os10t0413900-01;Locus_id=Os10g0413900;CGSNL Gene Symbol=NAC148;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 148;Oryzabase Gene Symbol Synonym(s)=ONAC148;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 148;Note=No apical meristem (NAM) protein domain containing protein.;Transcript_evidence=AK110942 (DDBJ%2C Best hit);ORF_evidence=A3C4Q2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=002-173-H02;Oryzabase=15907;Expression=AK110942;TENOR=Os10t0413900-01;KEGG=Os10t0413900-01
Chr10	irgsp1_rep	five_prime_UTR	14443785	14443987	.	+	.	Parent=Os10t0413900-01
Chr10	irgsp1_rep	CDS	14443988	14444231	.	+	0	Parent=Os10t0413900-01
Chr10	irgsp1_rep	CDS	14444313	14444575	.	+	2	Parent=Os10t0413900-01
Chr10	irgsp1_rep	CDS	14444673	14445293	.	+	0	Parent=Os10t0413900-01
Chr10	irgsp1_rep	three_prime_UTR	14445294	14445502	.	+	.	Parent=Os10t0413900-01
Chr10	irgsp1_rep	mRNA	14446549	14448666	.	+	.	ID=Os10t0414000-01;Name=Os10t0414000-01;Locus_id=Os10g0414000;CGSNL Gene Symbol=NAC119;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 119;Oryzabase Gene Symbol Synonym(s)=ONAC119;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 119;Note=No apical meristem (NAM) protein domain containing protein.;Transcript_evidence=AK242158 (DDBJ%2C Best hit);ORF_evidence=NP_001176149.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=J075155G16;Oryzabase=15880;TENOR=Os10t0414000-01;KEGG=Os10t0414000-01
Chr10	irgsp1_rep	five_prime_UTR	14446549	14446706	.	+	.	Parent=Os10t0414000-01
Chr10	irgsp1_rep	CDS	14446707	14446908	.	+	0	Parent=Os10t0414000-01
Chr10	irgsp1_rep	CDS	14447028	14447311	.	+	2	Parent=Os10t0414000-01
Chr10	irgsp1_rep	CDS	14447466	14448611	.	+	0	Parent=Os10t0414000-01
Chr10	irgsp1_rep	three_prime_UTR	14448612	14448666	.	+	.	Parent=Os10t0414000-01
Chr10	irgsp1_rep	mRNA	14474829	14478809	.	-	.	ID=Os10t0414500-01;Name=Os10t0414500-01;Locus_id=Os10g0414500;Note=Similar to Tetrapyrrole methylase family protein.;Transcript_evidence=AK067754 (DDBJ%2C Best hit);ORF_evidence=NP_175126.2 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Tetrapyrrole methylase (IPR000878),rRNA small subunit methyltransferase I (IPR008189),Tetrapyrrole methylase%2C subdomain 1 (IPR014777),SAM-dependent methyltransferase RsmI%2C conserved site (IPR018063);NIAS_FLcDNA=J013114M12;Expression=AK067754;TENOR=Os10t0414500-01;KEGG=Os10t0414500-01
Chr10	irgsp1_rep	five_prime_UTR	14478748	14478809	.	-	.	Parent=Os10t0414500-01
Chr10	irgsp1_rep	CDS	14478583	14478747	.	-	0	Parent=Os10t0414500-01
Chr10	irgsp1_rep	CDS	14477947	14478011	.	-	0	Parent=Os10t0414500-01
Chr10	irgsp1_rep	CDS	14477243	14477339	.	-	1	Parent=Os10t0414500-01
Chr10	irgsp1_rep	CDS	14477002	14477130	.	-	0	Parent=Os10t0414500-01
Chr10	irgsp1_rep	CDS	14476613	14476721	.	-	0	Parent=Os10t0414500-01
Chr10	irgsp1_rep	CDS	14476389	14476533	.	-	2	Parent=Os10t0414500-01
Chr10	irgsp1_rep	CDS	14476155	14476197	.	-	1	Parent=Os10t0414500-01
Chr10	irgsp1_rep	CDS	14475589	14475762	.	-	0	Parent=Os10t0414500-01
Chr10	irgsp1_rep	CDS	14475357	14475437	.	-	0	Parent=Os10t0414500-01
Chr10	irgsp1_rep	three_prime_UTR	14474829	14475356	.	-	.	Parent=Os10t0414500-01
Chr10	irgsp1_rep	mRNA	14487133	14493082	.	+	.	ID=Os10t0414700-01;Name=Os10t0414700-01;Locus_id=Os10g0414700;Oryzabase Gene Symbol Synonym(s)=PEP;Oryzabase Gene Name Synonym(s)=PEPPER;Note=K Homology domain containing protein.;Transcript_evidence=AK099068 (DDBJ%2C Best hit),AK063266 (DDBJ%2C Best hit);ORF_evidence=B8BGT6 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=K Homology (IPR004087),K Homology%2C type 1 (IPR004088),K Homology%2C type 1%2C subgroup (IPR018111);NIAS_FLcDNA=J013166L11,001-113-B01;Oryzabase=19093;TENOR=Os10t0414700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	14487133	14487224	.	+	0	Parent=Os10t0414700-01
Chr10	irgsp1_rep	CDS	14487945	14488278	.	+	1	Parent=Os10t0414700-01
Chr10	irgsp1_rep	CDS	14488826	14489057	.	+	0	Parent=Os10t0414700-01
Chr10	irgsp1_rep	CDS	14490620	14490771	.	+	2	Parent=Os10t0414700-01
Chr10	irgsp1_rep	CDS	14490881	14491588	.	+	0	Parent=Os10t0414700-01
Chr10	irgsp1_rep	CDS	14491732	14491923	.	+	0	Parent=Os10t0414700-01
Chr10	irgsp1_rep	CDS	14492572	14492733	.	+	0	Parent=Os10t0414700-01
Chr10	irgsp1_rep	three_prime_UTR	14492734	14493082	.	+	.	Parent=Os10t0414700-01
Chr10	irgsp1_rep	mRNA	14493299	14496761	.	+	.	ID=Os10t0414800-01;Name=Os10t0414800-01;Locus_id=Os10g0414800;Oryzabase Gene Symbol Synonym(s)=SIP8;Oryzabase Gene Name Synonym(s)=SKIP interacting protein 8%2C SKIPa-interacting protein 8%2C SKIPa-interacting protein 8;Note=Protein of unknown function DUF593 family protein.;Transcript_evidence=AK100246 (DDBJ%2C Best hit);ORF_evidence=B8Q894 (UniProt);InterPro=Protein of unknown function DUF593 (IPR007656);NIAS_FLcDNA=J023057O19;Oryzabase=9940;Expression=AK100246;TENOR=Os10t0414800-01;KEGG=Os10t0414800-01
Chr10	irgsp1_rep	five_prime_UTR	14493299	14493489	.	+	.	Parent=Os10t0414800-01
Chr10	irgsp1_rep	five_prime_UTR	14493708	14493954	.	+	.	Parent=Os10t0414800-01
Chr10	irgsp1_rep	CDS	14493955	14494450	.	+	0	Parent=Os10t0414800-01
Chr10	irgsp1_rep	CDS	14494550	14495850	.	+	2	Parent=Os10t0414800-01
Chr10	irgsp1_rep	three_prime_UTR	14495851	14495885	.	+	.	Parent=Os10t0414800-01
Chr10	irgsp1_rep	three_prime_UTR	14496386	14496761	.	+	.	Parent=Os10t0414800-01
Chr10	irgsp1_rep	mRNA	14498531	14500755	.	+	.	ID=Os10t0415100-01;Name=Os10t0415100-01;Locus_id=Os10g0415100;Oryzabase Gene Symbol Synonym(s)=OsGAT4;Oryzabase Gene Name Synonym(s)=gamma-aminobutyric acid transporter 4;Note=Amino acid transporter%2C transmembrane domain containing protein.;Transcript_evidence=AK119782 (DDBJ%2C Best hit);ORF_evidence=XP_002307630.1 (RefSeq);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=002-173-F03;Oryzabase=18512;Expression=AK119782;TENOR=Os10t0415100-01;KEGG=Os10t0415100-01
Chr10	irgsp1_rep	five_prime_UTR	14498531	14498607	.	+	.	Parent=Os10t0415100-01
Chr10	irgsp1_rep	CDS	14498608	14498794	.	+	0	Parent=Os10t0415100-01
Chr10	irgsp1_rep	CDS	14498976	14499098	.	+	2	Parent=Os10t0415100-01
Chr10	irgsp1_rep	CDS	14499353	14499640	.	+	2	Parent=Os10t0415100-01
Chr10	irgsp1_rep	CDS	14499732	14499862	.	+	2	Parent=Os10t0415100-01
Chr10	irgsp1_rep	CDS	14499936	14500151	.	+	0	Parent=Os10t0415100-01
Chr10	irgsp1_rep	CDS	14500231	14500614	.	+	0	Parent=Os10t0415100-01
Chr10	irgsp1_rep	three_prime_UTR	14500615	14500755	.	+	.	Parent=Os10t0415100-01
Chr10	irgsp1_rep	mRNA	14498559	14500680	.	+	.	ID=Os10t0415100-02;Name=Os10t0415100-02;Locus_id=Os10g0415100;Oryzabase Gene Symbol Synonym(s)=OsGAT4;Oryzabase Gene Name Synonym(s)=gamma-aminobutyric acid transporter 4;Note=Amino acid transporter%2C transmembrane domain containing protein.;Transcript_evidence=AK064079 (DDBJ%2C Best hit);ORF_evidence=XP_002307630.1 (RefSeq);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=002-100-A10;Oryzabase=18512;Expression=AK064079;TENOR=Os10t0415100-02;KEGG=Os10t0415100-02
Chr10	irgsp1_rep	five_prime_UTR	14498559	14498607	.	+	.	Parent=Os10t0415100-02
Chr10	irgsp1_rep	CDS	14498608	14498794	.	+	0	Parent=Os10t0415100-02
Chr10	irgsp1_rep	CDS	14498976	14499098	.	+	2	Parent=Os10t0415100-02
Chr10	irgsp1_rep	CDS	14499353	14499640	.	+	2	Parent=Os10t0415100-02
Chr10	irgsp1_rep	CDS	14499732	14499862	.	+	2	Parent=Os10t0415100-02
Chr10	irgsp1_rep	CDS	14499936	14500151	.	+	0	Parent=Os10t0415100-02
Chr10	irgsp1_rep	CDS	14500231	14500614	.	+	0	Parent=Os10t0415100-02
Chr10	irgsp1_rep	three_prime_UTR	14500615	14500680	.	+	.	Parent=Os10t0415100-02
Chr10	irgsp1_rep	mRNA	14500942	14504233	.	-	.	ID=Os10t0415200-01;Name=Os10t0415200-01;Locus_id=Os10g0415200;Note=Exocyst complex subunit Sec15-like family protein.;Transcript_evidence=AK070924 (DDBJ%2C Best hit);ORF_evidence=NP_191223.1 (RefSeq);GO=Biological Process: vesicle docking involved in exocytosis (GO:0006904),Cellular Component: exocyst (GO:0000145);InterPro=Exocyst complex subunit Sec15-like (IPR007225);NIAS_FLcDNA=J023074F24;Expression=AK070924;TENOR=Os10t0415200-01;KEGG=Os10t0415200-01
Chr10	irgsp1_rep	five_prime_UTR	14503934	14504233	.	-	.	Parent=Os10t0415200-01
Chr10	irgsp1_rep	five_prime_UTR	14503511	14503517	.	-	.	Parent=Os10t0415200-01
Chr10	irgsp1_rep	CDS	14501141	14503510	.	-	0	Parent=Os10t0415200-01
Chr10	irgsp1_rep	three_prime_UTR	14500942	14501140	.	-	.	Parent=Os10t0415200-01
Chr10	irgsp1_rep	mRNA	14500815	14504202	.	-	.	ID=Os10t0415200-02;Name=Os10t0415200-02;Locus_id=Os10g0415200;Note=Exocyst complex subunit Sec15-like family protein.;Transcript_evidence=AK068567 (DDBJ%2C Best hit);ORF_evidence=NP_191223.1 (RefSeq);GO=Biological Process: vesicle docking involved in exocytosis (GO:0006904),Cellular Component: exocyst (GO:0000145);InterPro=Exocyst complex subunit Sec15-like (IPR007225);NIAS_FLcDNA=J013152A07;Expression=AK068567;TENOR=Os10t0415200-02;KEGG=Os10t0415200-02
Chr10	irgsp1_rep	five_prime_UTR	14503934	14504202	.	-	.	Parent=Os10t0415200-02
Chr10	irgsp1_rep	five_prime_UTR	14503511	14503517	.	-	.	Parent=Os10t0415200-02
Chr10	irgsp1_rep	CDS	14501141	14503510	.	-	0	Parent=Os10t0415200-02
Chr10	irgsp1_rep	three_prime_UTR	14500815	14501140	.	-	.	Parent=Os10t0415200-02
Chr10	irgsp1_rep	mRNA	14505709	14508788	.	-	.	ID=Os10t0415300-01;Name=Os10t0415300-01;Locus_id=Os10g0415300;Oryzabase Gene Symbol Synonym(s)=OsGR3%2C GR3;Oryzabase Gene Name Synonym(s)=glutathione reductase 3;Note=Similar to Chloroplastic glutathione reductase.;Transcript_evidence=AK108799 (DDBJ%2C Best hit);ORF_evidence=Q7XEM9;GO=Biological Process: cell redox homeostasis (GO:0045454),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: cytoplasm (GO:0005737),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Pyridine nucleotide-disulphide oxidoreductase%2C dimerisation (IPR004099),FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR013027),FAD/NAD-linked reductase%2C dimerisation (IPR016156),Pyridine nucleotide-disulphide oxidoreductase%2C FAD/NAD(P)-binding domain (IPR023753);NIAS_FLcDNA=002-151-C06;Manual Curation=September 17%2C 2015;Oryzabase=10210;TENOR=Os10t0415300-01
Chr10	irgsp1_rep	five_prime_UTR	14508786	14508788	.	-	.	Parent=Os10t0415300-01
Chr10	irgsp1_rep	CDS	14508690	14508785	.	-	0	Parent=Os10t0415300-01
Chr10	irgsp1_rep	CDS	14508306	14508584	.	-	0	Parent=Os10t0415300-01
Chr10	irgsp1_rep	CDS	14508030	14508206	.	-	0	Parent=Os10t0415300-01
Chr10	irgsp1_rep	CDS	14507872	14507925	.	-	0	Parent=Os10t0415300-01
Chr10	irgsp1_rep	CDS	14507576	14507724	.	-	0	Parent=Os10t0415300-01
Chr10	irgsp1_rep	CDS	14507098	14507161	.	-	1	Parent=Os10t0415300-01
Chr10	irgsp1_rep	CDS	14506854	14507024	.	-	0	Parent=Os10t0415300-01
Chr10	irgsp1_rep	CDS	14506633	14506770	.	-	0	Parent=Os10t0415300-01
Chr10	irgsp1_rep	CDS	14506448	14506483	.	-	0	Parent=Os10t0415300-01
Chr10	irgsp1_rep	three_prime_UTR	14506424	14506447	.	-	.	Parent=Os10t0415300-01
Chr10	irgsp1_rep	three_prime_UTR	14505709	14506011	.	-	.	Parent=Os10t0415300-01
Chr10	irgsp1_rep	mRNA	14506448	14509906	.	-	.	ID=Os10t0415300-02;Name=Os10t0415300-02;Locus_id=Os10g0415300;RAP-DB Gene Symbol Synonym(s)=OsGR3%2C GR3;RAP-DB Gene Name Synonym(s)=glutathione reductase 3;Oryzabase Gene Symbol Synonym(s)=OsGR3%2C GR3;Oryzabase Gene Name Synonym(s)=glutathione reductase 3;Note=Glutathione reductase%2C Salt tolerance;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Biological Process: cell redox homeostasis (GO:0045454),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on a sulfur group of donors%2C NAD(P) as acceptor (GO:0016668),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=FAD/NAD(P)-binding domain (IPR023753),FAD/NAD-linked reductase%2C dimerisation domain (IPR016156),Pyridine nucleotide-disulphide oxidoreductase%2C dimerisation domain (IPR004099),Pyridine nucleotide-disulphide oxidoreductase%2C class I%2C active site (IPR012999);Manual Curation=September 17%2C 2015;Literature_PMID=23783412,25636203;Oryzabase=10210
Chr10	irgsp1_rep	CDS	14509500	14509906	.	-	0	Parent=Os10t0415300-02
Chr10	irgsp1_rep	CDS	14508690	14508915	.	-	1	Parent=Os10t0415300-02
Chr10	irgsp1_rep	CDS	14508306	14508584	.	-	0	Parent=Os10t0415300-02
Chr10	irgsp1_rep	CDS	14508066	14508206	.	-	0	Parent=Os10t0415300-02
Chr10	irgsp1_rep	CDS	14507872	14507925	.	-	0	Parent=Os10t0415300-02
Chr10	irgsp1_rep	CDS	14507576	14507724	.	-	0	Parent=Os10t0415300-02
Chr10	irgsp1_rep	CDS	14507098	14507161	.	-	1	Parent=Os10t0415300-02
Chr10	irgsp1_rep	CDS	14506854	14507024	.	-	0	Parent=Os10t0415300-02
Chr10	irgsp1_rep	CDS	14506633	14506770	.	-	0	Parent=Os10t0415300-02
Chr10	irgsp1_rep	CDS	14506448	14506483	.	-	0	Parent=Os10t0415300-02
Chr10	irgsp1_rep	mRNA	14513272	14520385	.	-	.	ID=Os10t0415400-01;Name=Os10t0415400-01;Locus_id=Os10g0415400;Note=Conserved hypothetical protein.;Transcript_evidence=AK069676 (DDBJ%2C Best hit);ORF_evidence=B8BGT9 (UniProt);NIAS_FLcDNA=J023026F22;Expression=AK069676;TENOR=Os10t0415400-01;KEGG=Os10t0415400-01
Chr10	irgsp1_rep	five_prime_UTR	14519899	14520385	.	-	.	Parent=Os10t0415400-01
Chr10	irgsp1_rep	five_prime_UTR	14517234	14517242	.	-	.	Parent=Os10t0415400-01
Chr10	irgsp1_rep	CDS	14517165	14517233	.	-	0	Parent=Os10t0415400-01
Chr10	irgsp1_rep	CDS	14513571	14513756	.	-	0	Parent=Os10t0415400-01
Chr10	irgsp1_rep	three_prime_UTR	14513272	14513570	.	-	.	Parent=Os10t0415400-01
Chr10	irgsp1_rep	mRNA	14532814	14533326	.	+	.	ID=Os10t0415600-01;Name=Os10t0415600-01;Locus_id=Os10g0415600;Oryzabase Gene Symbol Synonym(s)=OsPOP21%2C POP21;Oryzabase Gene Name Synonym(s)=Prolyl Oligopeptidase 21%2C PROLYL OLIGOPEPTIDASE 21;Note=Non-protein coding transcript.;Transcript_evidence=AK109190 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-156-B03;Oryzabase=20029;TENOR=Os10t0415600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	exon	14532814	14533326	.	+	.	Parent=Os10t0415600-01
Chr10	irgsp1_rep	mRNA	14532843	14539760	.	+	.	ID=Os10t0415600-02;Name=Os10t0415600-02;Locus_id=Os10g0415600;Oryzabase Gene Symbol Synonym(s)=OsPOP21%2C POP21;Oryzabase Gene Name Synonym(s)=Prolyl Oligopeptidase 21%2C PROLYL OLIGOPEPTIDASE 21;Note=Similar to acylamino-acid-releasing enzyme.;Transcript_evidence=AK066606 (DDBJ%2C Best hit);ORF_evidence=Q338C1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40-like Beta Propeller (IPR011659),WD40/YVTN repeat-like-containing domain (IPR015943);NIAS_FLcDNA=J013071P22;Oryzabase=20029;TENOR=Os10t0415600-02
Chr10	irgsp1_rep	five_prime_UTR	14532843	14532869	.	+	.	Parent=Os10t0415600-02
Chr10	irgsp1_rep	CDS	14532870	14533030	.	+	0	Parent=Os10t0415600-02
Chr10	irgsp1_rep	CDS	14536652	14536842	.	+	1	Parent=Os10t0415600-02
Chr10	irgsp1_rep	CDS	14536912	14537221	.	+	2	Parent=Os10t0415600-02
Chr10	irgsp1_rep	CDS	14537365	14537586	.	+	1	Parent=Os10t0415600-02
Chr10	irgsp1_rep	CDS	14537669	14537893	.	+	1	Parent=Os10t0415600-02
Chr10	irgsp1_rep	CDS	14538217	14538291	.	+	1	Parent=Os10t0415600-02
Chr10	irgsp1_rep	CDS	14538791	14538926	.	+	1	Parent=Os10t0415600-02
Chr10	irgsp1_rep	CDS	14539272	14539423	.	+	0	Parent=Os10t0415600-02
Chr10	irgsp1_rep	CDS	14539509	14539591	.	+	1	Parent=Os10t0415600-02
Chr10	irgsp1_rep	CDS	14539677	14539760	.	+	2	Parent=Os10t0415600-02
Chr10	irgsp1_rep	mRNA	14532913	14543160	.	+	.	ID=Os10t0415600-03;Name=Os10t0415600-03;Locus_id=Os10g0415600;Oryzabase Gene Symbol Synonym(s)=OsPOP21%2C POP21;Oryzabase Gene Name Synonym(s)=Prolyl Oligopeptidase 21%2C PROLYL OLIGOPEPTIDASE 21;Note=Similar to Prolyl oligopeptidase family protein%2C expressed.;Transcript_evidence=AK070876 (DDBJ%2C Best hit);ORF_evidence=Q338C1 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: protein binding (GO:0005515),Molecular Function: serine-type peptidase activity (GO:0008236);InterPro=Peptidase S9%2C prolyl oligopeptidase%2C catalytic domain (IPR001375),Peptidase S9%2C serine active site (IPR002471),WD40-like Beta Propeller (IPR011659),WD40/YVTN repeat-like-containing domain (IPR015943);NIAS_FLcDNA=J023072L05;Oryzabase=20029;TENOR=Os10t0415600-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	14532913	14532914	.	+	.	Parent=Os10t0415600-03
Chr10	irgsp1_rep	CDS	14532915	14533030	.	+	0	Parent=Os10t0415600-03
Chr10	irgsp1_rep	CDS	14536652	14536842	.	+	1	Parent=Os10t0415600-03
Chr10	irgsp1_rep	CDS	14536912	14537221	.	+	2	Parent=Os10t0415600-03
Chr10	irgsp1_rep	CDS	14537365	14537586	.	+	1	Parent=Os10t0415600-03
Chr10	irgsp1_rep	CDS	14537669	14537893	.	+	1	Parent=Os10t0415600-03
Chr10	irgsp1_rep	CDS	14538217	14538291	.	+	1	Parent=Os10t0415600-03
Chr10	irgsp1_rep	CDS	14538791	14538926	.	+	1	Parent=Os10t0415600-03
Chr10	irgsp1_rep	CDS	14539272	14539423	.	+	0	Parent=Os10t0415600-03
Chr10	irgsp1_rep	CDS	14539509	14539591	.	+	1	Parent=Os10t0415600-03
Chr10	irgsp1_rep	CDS	14539677	14539798	.	+	2	Parent=Os10t0415600-03
Chr10	irgsp1_rep	CDS	14539904	14539982	.	+	0	Parent=Os10t0415600-03
Chr10	irgsp1_rep	CDS	14540424	14540592	.	+	2	Parent=Os10t0415600-03
Chr10	irgsp1_rep	CDS	14540734	14540794	.	+	1	Parent=Os10t0415600-03
Chr10	irgsp1_rep	CDS	14540901	14541023	.	+	0	Parent=Os10t0415600-03
Chr10	irgsp1_rep	CDS	14541889	14542086	.	+	0	Parent=Os10t0415600-03
Chr10	irgsp1_rep	CDS	14542217	14542285	.	+	0	Parent=Os10t0415600-03
Chr10	irgsp1_rep	CDS	14542525	14542601	.	+	0	Parent=Os10t0415600-03
Chr10	irgsp1_rep	CDS	14542699	14542765	.	+	1	Parent=Os10t0415600-03
Chr10	irgsp1_rep	three_prime_UTR	14542766	14543160	.	+	.	Parent=Os10t0415600-03
Chr10	irgsp1_rep	mRNA	14543601	14549003	.	+	.	ID=Os10t0415800-01;Name=Os10t0415800-01;Locus_id=Os10g0415800;Oryzabase Gene Symbol Synonym(s)=OsPOP22%2C POP22;Oryzabase Gene Name Synonym(s)=Prolyl Oligopeptidase 22%2C PROLYL OLIGOPEPTIDASE 22;Note=Similar to Prolyl oligopeptidase family protein%2C expressed.;Transcript_evidence=AK066318 (DDBJ%2C Best hit);ORF_evidence=Q338C0 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: serine-type peptidase activity (GO:0008236);InterPro=Peptidase S9%2C prolyl oligopeptidase%2C catalytic domain (IPR001375),Peptidase S9%2C serine active site (IPR002471),Six-bladed beta-propeller%2C TolB-like (IPR011042);NIAS_FLcDNA=J013067G13;Oryzabase=20030;TENOR=Os10t0415800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	14543601	14543651	.	+	.	Parent=Os10t0415800-01
Chr10	irgsp1_rep	five_prime_UTR	14544501	14544585	.	+	.	Parent=Os10t0415800-01
Chr10	irgsp1_rep	CDS	14544586	14544691	.	+	0	Parent=Os10t0415800-01
Chr10	irgsp1_rep	CDS	14544784	14545093	.	+	2	Parent=Os10t0415800-01
Chr10	irgsp1_rep	CDS	14545184	14545405	.	+	1	Parent=Os10t0415800-01
Chr10	irgsp1_rep	CDS	14545498	14545737	.	+	1	Parent=Os10t0415800-01
Chr10	irgsp1_rep	CDS	14545899	14545976	.	+	1	Parent=Os10t0415800-01
Chr10	irgsp1_rep	CDS	14546070	14546208	.	+	1	Parent=Os10t0415800-01
Chr10	irgsp1_rep	CDS	14546286	14546437	.	+	0	Parent=Os10t0415800-01
Chr10	irgsp1_rep	CDS	14546523	14546605	.	+	1	Parent=Os10t0415800-01
Chr10	irgsp1_rep	CDS	14546698	14546822	.	+	2	Parent=Os10t0415800-01
Chr10	irgsp1_rep	CDS	14546934	14547012	.	+	0	Parent=Os10t0415800-01
Chr10	irgsp1_rep	CDS	14547096	14547264	.	+	2	Parent=Os10t0415800-01
Chr10	irgsp1_rep	CDS	14547343	14547403	.	+	1	Parent=Os10t0415800-01
Chr10	irgsp1_rep	CDS	14547484	14547606	.	+	0	Parent=Os10t0415800-01
Chr10	irgsp1_rep	CDS	14547724	14547921	.	+	0	Parent=Os10t0415800-01
Chr10	irgsp1_rep	CDS	14548099	14548167	.	+	0	Parent=Os10t0415800-01
Chr10	irgsp1_rep	CDS	14548416	14548492	.	+	0	Parent=Os10t0415800-01
Chr10	irgsp1_rep	CDS	14548647	14548734	.	+	1	Parent=Os10t0415800-01
Chr10	irgsp1_rep	three_prime_UTR	14548735	14549003	.	+	.	Parent=Os10t0415800-01
Chr10	irgsp1_rep	mRNA	14546521	14548901	.	+	.	ID=Os10t0415800-02;Name=Os10t0415800-02;Locus_id=Os10g0415800;Oryzabase Gene Symbol Synonym(s)=OsPOP22%2C POP22;Oryzabase Gene Name Synonym(s)=Prolyl Oligopeptidase 22%2C PROLYL OLIGOPEPTIDASE 22;Note=Similar to Prolyl oligopeptidase family protein%2C expressed.;Transcript_evidence=AK061694 (DDBJ%2C Best hit);ORF_evidence=Q338C0 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: serine-type peptidase activity (GO:0008236);InterPro=Peptidase S9%2C prolyl oligopeptidase%2C catalytic domain (IPR001375),Peptidase S9%2C serine active site (IPR002471);NIAS_FLcDNA=001-037-C07;Oryzabase=20030;Expression=AK061694;TENOR=Os10t0415800-02;KEGG=Os10t0415800-02 (EC:3.4.19.1)
Chr10	irgsp1_rep	CDS	14546521	14546605	.	+	0	Parent=Os10t0415800-02
Chr10	irgsp1_rep	CDS	14546698	14546822	.	+	2	Parent=Os10t0415800-02
Chr10	irgsp1_rep	CDS	14546934	14547012	.	+	0	Parent=Os10t0415800-02
Chr10	irgsp1_rep	CDS	14547096	14547264	.	+	2	Parent=Os10t0415800-02
Chr10	irgsp1_rep	CDS	14547343	14547403	.	+	1	Parent=Os10t0415800-02
Chr10	irgsp1_rep	CDS	14547484	14547606	.	+	0	Parent=Os10t0415800-02
Chr10	irgsp1_rep	CDS	14547724	14547921	.	+	0	Parent=Os10t0415800-02
Chr10	irgsp1_rep	CDS	14548099	14548167	.	+	0	Parent=Os10t0415800-02
Chr10	irgsp1_rep	CDS	14548416	14548492	.	+	0	Parent=Os10t0415800-02
Chr10	irgsp1_rep	CDS	14548647	14548734	.	+	1	Parent=Os10t0415800-02
Chr10	irgsp1_rep	three_prime_UTR	14548735	14548901	.	+	.	Parent=Os10t0415800-02
Chr10	irgsp1_rep	mRNA	14549359	14555547	.	-	.	ID=Os10t0415900-01;Name=Os10t0415900-01;Locus_id=Os10g0415900;CGSNL Gene Symbol=HAG702;CGSNL Gene Name=HISTONE ACETYLTRANSFERASE HAG702;Oryzabase Gene Symbol Synonym(s)=OsHAG702%2C GCN5;Oryzabase Gene Name Synonym(s)=Histone acetyltransferase HAG702;Note=Similar to General control of amino-acid synthesis 5-like 2 (Fragment).;Transcript_evidence=AK111779 (DDBJ%2C Best hit);ORF_evidence=Q338B9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: protein binding (GO:0005515),Molecular Function: N-acetyltransferase activity (GO:0008080);InterPro=GCN5-related N-acetyltransferase (GNAT) domain (IPR000182),Bromodomain (IPR001487),Acyl-CoA N-acyltransferase (IPR016181),Bromodomain%2C conserved site (IPR018359);NIAS_FLcDNA=J023078H10;Oryzabase=11171;Expression=AK111779;TENOR=Os10t0415900-01;KEGG=Os10t0415900-01 (EC:2.3.1.48)
Chr10	irgsp1_rep	five_prime_UTR	14555433	14555547	.	-	.	Parent=Os10t0415900-01
Chr10	irgsp1_rep	CDS	14554968	14555432	.	-	0	Parent=Os10t0415900-01
Chr10	irgsp1_rep	CDS	14554758	14554822	.	-	0	Parent=Os10t0415900-01
Chr10	irgsp1_rep	CDS	14554611	14554691	.	-	1	Parent=Os10t0415900-01
Chr10	irgsp1_rep	CDS	14554434	14554505	.	-	1	Parent=Os10t0415900-01
Chr10	irgsp1_rep	CDS	14553877	14554045	.	-	1	Parent=Os10t0415900-01
Chr10	irgsp1_rep	CDS	14553384	14553427	.	-	0	Parent=Os10t0415900-01
Chr10	irgsp1_rep	CDS	14553112	14553211	.	-	1	Parent=Os10t0415900-01
Chr10	irgsp1_rep	CDS	14552854	14552922	.	-	0	Parent=Os10t0415900-01
Chr10	irgsp1_rep	CDS	14552212	14552266	.	-	0	Parent=Os10t0415900-01
Chr10	irgsp1_rep	CDS	14551233	14551348	.	-	2	Parent=Os10t0415900-01
Chr10	irgsp1_rep	CDS	14550418	14550511	.	-	0	Parent=Os10t0415900-01
Chr10	irgsp1_rep	CDS	14550166	14550307	.	-	2	Parent=Os10t0415900-01
Chr10	irgsp1_rep	CDS	14549399	14549462	.	-	1	Parent=Os10t0415900-01
Chr10	irgsp1_rep	three_prime_UTR	14549359	14549398	.	-	.	Parent=Os10t0415900-01
Chr10	irgsp1_rep	mRNA	14556502	14558189	.	+	.	ID=Os10t0416000-01;Name=Os10t0416000-01;Locus_id=Os10g0416000;Note=Non-protein coding transcript.;Transcript_evidence=AK121323 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023116B05;TENOR=Os10t0416000-01
Chr10	irgsp1_rep	exon	14556502	14558189	.	+	.	Parent=Os10t0416000-01
Chr10	irgsp1_rep	mRNA	14558964	14560173	.	+	.	ID=Os10t0416100-01;Name=Os10t0416100-01;Locus_id=Os10g0416100;Oryzabase Gene Symbol Synonym(s)=RCB4;Oryzabase Gene Name Synonym(s)=chitinase RCB4;Note=Class III chitinase RCB4 (EC 3.2.1.14).;Transcript_evidence=AK071453 (DDBJ%2C Best hit);ORF_evidence=Q8GZT6 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=2S globulin (IPR000677),Glycoside hydrolase%2C family 18%2C catalytic domain (IPR001223),Glycoside hydrolase%2C chitinase active site (IPR001579),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J023093F02;Oryzabase=14256;Expression=AK071453;TENOR=Os10t0416100-01;KEGG=Os10t0416100-01 (EC:3.2.1.14)
Chr10	irgsp1_rep	five_prime_UTR	14558964	14559015	.	+	.	Parent=Os10t0416100-01
Chr10	irgsp1_rep	CDS	14559016	14559939	.	+	0	Parent=Os10t0416100-01
Chr10	irgsp1_rep	three_prime_UTR	14559940	14560173	.	+	.	Parent=Os10t0416100-01
Chr10	irgsp1_rep	mRNA	14559078	14560173	.	+	.	ID=Os10t0416100-02;Name=Os10t0416100-02;Locus_id=Os10g0416100;Oryzabase Gene Symbol Synonym(s)=RCB4;Oryzabase Gene Name Synonym(s)=chitinase RCB4;Note=Similar to Chitinase (Fragment).;Transcript_evidence=AK061215 (DDBJ%2C Best hit);ORF_evidence=Q8GZT6 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=2S globulin (IPR000677),Glycoside hydrolase%2C family 18%2C catalytic domain (IPR001223),Glycoside hydrolase%2C chitinase active site (IPR001579),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=006-210-E04;Oryzabase=14256;Expression=AK061215;TENOR=Os10t0416100-02;KEGG=Os10t0416100-02
Chr10	irgsp1_rep	five_prime_UTR	14559078	14559078	.	+	.	Parent=Os10t0416100-02
Chr10	irgsp1_rep	CDS	14559079	14559939	.	+	0	Parent=Os10t0416100-02
Chr10	irgsp1_rep	three_prime_UTR	14559940	14560173	.	+	.	Parent=Os10t0416100-02
Chr10	irgsp1_rep	mRNA	14560601	14565737	.	-	.	ID=Os10t0416200-01;Name=Os10t0416200-01;Locus_id=Os10g0416200;RAP-DB Gene Symbol Synonym(s)=ONI2;RAP-DB Gene Name Synonym(s)=ONION2;Oryzabase Gene Symbol Synonym(s)=ONI2;Oryzabase Gene Name Synonym(s)=ONION2;Note=Fatty acid elongase (beta-ketoacyl-CoA synthase)%2C Shoot development;Transcript_evidence=Inferred from literature;ORF_evidence=Q7XEM4;GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: metabolic process (GO:0008152),Biological Process: lipid biosynthetic process (GO:0008610),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747),Cellular Component: membrane (GO:0016020);InterPro=Very-long-chain 3-ketoacyl-CoA synthase (IPR012392),Thiolase-like (IPR016039),FAE1/Type III polyketide synthase-like protein (IPR013601),Thiolase-like%2C subgroup (IPR016038),3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (IPR013747);Manual Curation=December 8%2C 2014;Literature_PMID=23220821;Oryzabase=12366;TENOR=Os10t0416200-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	14565672	14565737	.	-	.	Parent=Os10t0416200-01
Chr10	irgsp1_rep	CDS	14564916	14565671	.	-	0	Parent=Os10t0416200-01
Chr10	irgsp1_rep	CDS	14560819	14561634	.	-	0	Parent=Os10t0416200-01
Chr10	irgsp1_rep	three_prime_UTR	14560601	14560818	.	-	.	Parent=Os10t0416200-01
Chr10	irgsp1_rep	mRNA	14560840	14565683	.	+	.	ID=Os10t0416350-00;Name=Os10t0416350-00;Locus_id=Os10g0416350;Note=Hypothetical protein.;Transcript_evidence=tplb0030b11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0416350-00
Chr10	irgsp1_rep	five_prime_UTR	14560840	14561287	.	+	.	Parent=Os10t0416350-00
Chr10	irgsp1_rep	CDS	14561288	14561616	.	+	0	Parent=Os10t0416350-00
Chr10	irgsp1_rep	CDS	14564897	14565683	.	+	1	Parent=Os10t0416350-00
Chr10	irgsp1_rep	mRNA	14590045	14591113	.	+	.	ID=Os10t0416500-04;Name=Os10t0416500-04;Locus_id=Os10g0416500;Oryzabase Gene Symbol Synonym(s)=Oschib1%2C PR-8%2C PR8%2C OsPR8;Oryzabase Gene Name Synonym(s)=pathogenesis-related protein 8%2C Chitinase 1;Note=Similar to Chitinase 1 precursor (EC 3.2.1.14) (Tulip bulb chitinase-1) (TBC-1).;Transcript_evidence=AK059767 (DDBJ%2C Best hit),AK104100 (DDBJ%2C Best hit),AK104202 (DDBJ%2C Best hit),AK104397 (DDBJ%2C Best hit);ORF_evidence=B4FBN8 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=2S globulin (IPR000677),Glycoside hydrolase%2C family 18%2C catalytic domain (IPR001223),Glycoside hydrolase%2C chitinase active site (IPR001579),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=006-203-G07,006-201-G07,006-304-C04,006-202-C10;Oryzabase=11667;Expression=AK059767;TENOR=Os10t0416500-04;KEGG=Os10t0416500-04 (EC:3.2.1.14)
Chr10	irgsp1_rep	five_prime_UTR	14590045	14590100	.	+	.	Parent=Os10t0416500-04
Chr10	irgsp1_rep	CDS	14590101	14590961	.	+	0	Parent=Os10t0416500-04
Chr10	irgsp1_rep	three_prime_UTR	14590962	14591113	.	+	.	Parent=Os10t0416500-04
Chr10	irgsp1_rep	mRNA	14602523	14603656	.	+	.	ID=Os10t0416800-03;Name=Os10t0416800-03;Locus_id=Os10g0416800;Oryzabase Gene Symbol Synonym(s)=Oschib2;Note=Similar to Chitinase 2 (EC 3.2.1.14) (Tulip bulb chitinase-2) (TBC-2).;Transcript_evidence=AK060033 (DDBJ%2C Best hit),AK099101 (DDBJ%2C Best hit),AK104222 (DDBJ%2C Best hit),AK104292 (DDBJ%2C Best hit),AK119555 (DDBJ%2C Best hit);ORF_evidence=Q9FYR9 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=2S globulin (IPR000677),Glycoside hydrolase%2C family 18%2C catalytic domain (IPR001223),Glycoside hydrolase%2C chitinase active site (IPR001579),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=006-303-H08,J023025I19,006-306-E05,001-007-F06,001-208-E12;Oryzabase=11668;Expression=AK060033;TENOR=Os10t0416800-03;KEGG=Os10t0416800-03 (EC:3.2.1.14)
Chr10	irgsp1_rep	five_prime_UTR	14602523	14602546	.	+	.	Parent=Os10t0416800-03
Chr10	irgsp1_rep	CDS	14602547	14603413	.	+	0	Parent=Os10t0416800-03
Chr10	irgsp1_rep	three_prime_UTR	14603414	14603656	.	+	.	Parent=Os10t0416800-03
Chr10	irgsp1_rep	mRNA	14621831	14622148	.	+	.	ID=Os10t0417300-00;Name=Os10t0417300-00;Locus_id=Os10g0417300;Note=Similar to predicted protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8S866 (UniProt);TENOR=Os10t0417300-00;KEGG=Os10t0417300-00
Chr10	irgsp1_rep	CDS	14621831	14622148	.	+	0	Parent=Os10t0417300-00
Chr10	irgsp1_rep	mRNA	14640044	14643338	.	+	.	ID=Os10t0417600-01;Name=Os10t0417600-01;Locus_id=Os10g0417600;Oryzabase Gene Symbol Synonym(s)=OsGME1%2C GME1;Oryzabase Gene Name Synonym(s)=GDP-D-mannose-3'%2C 5'-epimerase 1%2C GDP-D-mannose epimerase 1;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK069385 (DDBJ%2C Best hit),AK104822 (DDBJ%2C Best hit);ORF_evidence=B7EX80 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023012D14,001-041-B04;Oryzabase=18583;Expression=AK069385;TENOR=Os10t0417600-01;KEGG=Os10t0417600-01 (EC:5.1.3.-%2C EC:5.1.3.18)
Chr10	irgsp1_rep	five_prime_UTR	14640044	14640167	.	+	.	Parent=Os10t0417600-01
Chr10	irgsp1_rep	five_prime_UTR	14641371	14641371	.	+	.	Parent=Os10t0417600-01
Chr10	irgsp1_rep	CDS	14641372	14641787	.	+	0	Parent=Os10t0417600-01
Chr10	irgsp1_rep	CDS	14641895	14641988	.	+	1	Parent=Os10t0417600-01
Chr10	irgsp1_rep	CDS	14642076	14642205	.	+	0	Parent=Os10t0417600-01
Chr10	irgsp1_rep	CDS	14642285	14642417	.	+	2	Parent=Os10t0417600-01
Chr10	irgsp1_rep	CDS	14642514	14642721	.	+	1	Parent=Os10t0417600-01
Chr10	irgsp1_rep	CDS	14642855	14643010	.	+	0	Parent=Os10t0417600-01
Chr10	irgsp1_rep	three_prime_UTR	14643011	14643338	.	+	.	Parent=Os10t0417600-01
Chr10	irgsp1_rep	mRNA	14657778	14659426	.	-	.	ID=Os10t0417800-01;Name=Os10t0417800-01;Locus_id=Os10g0417800;Note=Protein of unknown function DUF506%2C plant family protein.;Transcript_evidence=AK067822 (DDBJ%2C Best hit),AK119634 (DDBJ%2C Best hit);ORF_evidence=B6TMA8 (UniProt);InterPro=Protein of unknown function DUF506%2C plant (IPR006502);NIAS_FLcDNA=J013119P11,002-130-F01;Expression=AK067822;TENOR=Os10t0417800-01;KEGG=Os10t0417800-01
Chr10	irgsp1_rep	five_prime_UTR	14659232	14659426	.	-	.	Parent=Os10t0417800-01
Chr10	irgsp1_rep	CDS	14658899	14659231	.	-	0	Parent=Os10t0417800-01
Chr10	irgsp1_rep	CDS	14658214	14658786	.	-	0	Parent=Os10t0417800-01
Chr10	irgsp1_rep	three_prime_UTR	14657778	14658213	.	-	.	Parent=Os10t0417800-01
Chr10	irgsp1_rep	mRNA	14678198	14679366	.	+	.	ID=Os10t0418000-01;Name=Os10t0418000-01;Locus_id=Os10g0418000;Note=Similar to Histone H2A.;Transcript_evidence=AK121515 (DDBJ%2C Best hit);ORF_evidence=A2Z7B5 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H2A (IPR002119),Histone core (IPR007125),Histone-fold (IPR009072);NIAS_FLcDNA=J033025E19;Expression=AK121515;TENOR=Os10t0418000-01;KEGG=Os10t0418000-01
Chr10	irgsp1_rep	five_prime_UTR	14678198	14678274	.	+	.	Parent=Os10t0418000-01
Chr10	irgsp1_rep	CDS	14678275	14678397	.	+	0	Parent=Os10t0418000-01
Chr10	irgsp1_rep	CDS	14678768	14679064	.	+	0	Parent=Os10t0418000-01
Chr10	irgsp1_rep	three_prime_UTR	14679065	14679366	.	+	.	Parent=Os10t0418000-01
Chr10	irgsp1_rep	mRNA	14681977	14685413	.	-	.	ID=Os10t0418100-01;Name=Os10t0418100-01;Locus_id=Os10g0418100;RAP-DB Gene Symbol Synonym(s)=ACA8%2C osACA8%2C OsACA7;RAP-DB Gene Name Synonym(s)=CA2+-ATPASE 8%2C Ca2+ P-Type ATPase 8;CGSNL Gene Symbol=ACA8;CGSNL Gene Name=CA2+-ATPASE 8;Oryzabase Gene Symbol Synonym(s)=osACA8%2C OsACA7%2C ACA13;Oryzabase Gene Name Synonym(s)=Ca2+ P-Type ATPase 8%2C auto-inhibited Ca2+-ATPase 13;Note=Calcium-transporting ATPase%2C Salinity stress tolerance;Transcript_evidence=XM_015757582.1.;ORF_evidence=Q7XEK4;GO=Biological Process: calcium ion transmembrane transport (GO:0070588),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: calcium-transporting ATPase activity (GO:0005388),Molecular Function: ATP binding (GO:0005524),Molecular Function: metal ion binding (GO:0046872),Cellular Component: membrane (GO:0016020),Cellular Component: integral component of membrane (GO:0016021);InterPro=P-type ATPase (IPR001757),P-type ATPase%2C subfamily IIB (IPR006408),Cation-transporting P-type ATPase%2C N-terminal (IPR004014),P-type ATPase%2C A  domain (IPR008250),P-type ATPase%2C  transmembrane domain (IPR023298),HAD-like domain (IPR023214),P-type ATPase%2C cytoplasmic domain N (IPR023299),Cation-transporting P-type ATPase%2C C-terminal (IPR006068),P-type ATPase%2C phosphorylation site (IPR018303);Manual Curation=May 31%2C 2016;Literature_PMID=24286292,12805592;Oryzabase=13240;TENOR=Os10t0418100-01;KEGG=Os10t0418100-01 (EC:3.6.3.8);B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	14685232	14685413	.	-	.	Parent=Os10t0418100-01
Chr10	irgsp1_rep	CDS	14682124	14685231	.	-	0	Parent=Os10t0418100-01
Chr10	irgsp1_rep	three_prime_UTR	14681977	14682123	.	-	.	Parent=Os10t0418100-01
Chr10	irgsp1_rep	mRNA	14693332	14694231	.	+	.	ID=Os10t0418300-01;Name=Os10t0418300-01;Locus_id=Os10g0418300;Note=Hypothetical conserved gene.;Transcript_evidence=AK061342 (DDBJ%2C Best hit),AK099297 (DDBJ%2C Best hit),AK104672 (DDBJ%2C Best hit);ORF_evidence=B8BGV2 (UniProt);NIAS_FLcDNA=006-303-E04,J023135H02,001-026-F04;TENOR=Os10t0418300-01
Chr10	irgsp1_rep	CDS	14693332	14693898	.	+	0	Parent=Os10t0418300-01
Chr10	irgsp1_rep	three_prime_UTR	14693899	14694231	.	+	.	Parent=Os10t0418300-01
Chr10	irgsp1_rep	mRNA	14717787	14718330	.	-	.	ID=Os10t0418900-01;Name=Os10t0418900-01;Locus_id=Os10g0418900;Note=Hypothetical conserved gene.;Transcript_evidence=AK063081 (DDBJ%2C Best hit);ORF_evidence=B9G5S0 (UniProt);NIAS_FLcDNA=001-111-A03;Expression=AK063081;TENOR=Os10t0418900-01;KEGG=Os10t0418900-01
Chr10	irgsp1_rep	five_prime_UTR	14718271	14718330	.	-	.	Parent=Os10t0418900-01
Chr10	irgsp1_rep	CDS	14718171	14718270	.	-	0	Parent=Os10t0418900-01
Chr10	irgsp1_rep	CDS	14717948	14718033	.	-	2	Parent=Os10t0418900-01
Chr10	irgsp1_rep	three_prime_UTR	14717787	14717947	.	-	.	Parent=Os10t0418900-01
Chr10	irgsp1_rep	mRNA	14731536	14736612	.	+	.	ID=Os10t0419100-01;Name=Os10t0419100-01;Locus_id=Os10g0419100;Note=Similar to Perakine reductase.;Transcript_evidence=AK064344 (DDBJ%2C Best hit),AK099316 (DDBJ%2C Best hit);ORF_evidence=Q3L181 (UniProt);InterPro=Aldo/keto reductase (IPR001395),NADP-dependent oxidoreductase domain (IPR023210);NIAS_FLcDNA=002-107-H09,J023145C18;TENOR=Os10t0419100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	14731536	14731626	.	+	.	Parent=Os10t0419100-01
Chr10	irgsp1_rep	CDS	14731627	14731677	.	+	0	Parent=Os10t0419100-01
Chr10	irgsp1_rep	CDS	14731914	14732081	.	+	0	Parent=Os10t0419100-01
Chr10	irgsp1_rep	CDS	14733309	14733512	.	+	0	Parent=Os10t0419100-01
Chr10	irgsp1_rep	CDS	14733601	14733773	.	+	0	Parent=Os10t0419100-01
Chr10	irgsp1_rep	CDS	14734142	14734238	.	+	1	Parent=Os10t0419100-01
Chr10	irgsp1_rep	CDS	14734355	14734508	.	+	0	Parent=Os10t0419100-01
Chr10	irgsp1_rep	CDS	14736201	14736385	.	+	2	Parent=Os10t0419100-01
Chr10	irgsp1_rep	three_prime_UTR	14736386	14736612	.	+	.	Parent=Os10t0419100-01
Chr10	irgsp1_rep	mRNA	14739603	14743098	.	-	.	ID=Os10t0419200-01;Name=Os10t0419200-01;Locus_id=Os10g0419200;RAP-DB Gene Symbol Synonym(s)=Ehd2%2C RID1%2C OsID1%2C OsId1%2C RID1/OsID1/Ehd2;RAP-DB Gene Name Synonym(s)=early heading date 2%2C Indeterminate 1%2C Rice Indeterminate 1;CGSNL Gene Symbol=EHD2/RID1;CGSNL Gene Name=EARLY HEADING DATE 2;Oryzabase Gene Symbol Synonym(s)=Ehd2%2C RID1%2C OsID1%2C ID1%2C OsId1%2C OsID%2C Ehd2/RID1/OsId1%2C RID1/OsID1/Ehd2;Oryzabase Gene Name Synonym(s)=early heading date 2%2C Indeterminate 1%2C Indeterminate%2C Rice Indeterminate 1;Note=Cys2/His2-type zinc finger transcription factor%2C Heading date;Transcript_evidence=AB359196 (Genbank),FJ009578 (Genbank);ORF_evidence=B1B534 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880),Zinc finger%2C double-stranded RNA binding (IPR022755);Manual Curation=October 24%2C 2017;Literature_PMID=18790997,18774969,18725639;Oryzabase=8085;TENOR=Os10t0419200-00
Chr10	irgsp1_rep	five_prime_UTR	14742944	14743098	.	-	.	Parent=Os10t0419200-01
Chr10	irgsp1_rep	CDS	14742688	14742943	.	-	0	Parent=Os10t0419200-01
Chr10	irgsp1_rep	CDS	14742169	14742592	.	-	2	Parent=Os10t0419200-01
Chr10	irgsp1_rep	CDS	14739897	14740644	.	-	1	Parent=Os10t0419200-01
Chr10	irgsp1_rep	three_prime_UTR	14739603	14739896	.	-	.	Parent=Os10t0419200-01
Chr10	irgsp1_rep	mRNA	14742273	14742595	.	+	.	ID=Os10t0419250-00;Name=Os10t0419250-00;Locus_id=Os10g0419250;Note=Hypothetical protein.;Transcript_evidence=BT086922 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0419250-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	14742273	14742595	.	+	0	Parent=Os10t0419250-00
Chr10	irgsp1_rep	mRNA	14746825	14749829	.	-	.	ID=Os10t0419300-01;Name=Os10t0419300-01;Locus_id=Os10g0419300;RAP-DB Gene Symbol Synonym(s)=OsHsfA6a;RAP-DB Gene Name Synonym(s)=Heat stress transcription factor A6a;CGSNL Gene Symbol=HSFA2C;CGSNL Gene Name=HEAT STRESS TRANSCRIPTION FACTOR A2C;Oryzabase Gene Symbol Synonym(s)=HSfA2c%2C OsHsfA2c%2C OsHsf-25%2C rHsf6%2C OsHSF6%2C HSF25%2C OsHSF25%2C HSF6%2C OsHsfA6a%2C HsfA6a;Oryzabase Gene Name Synonym(s)=Heat stress transcription factor A2c%2C Heat stress transcription factor A-2c%2C Heat stress transcription factor 25%2C Heat stress transcription factor 6;Note=Heat stress transcription factor;Transcript_evidence=AY344488;ORF_evidence=Q338B0;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA-binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Cellular Component: nucleus (GO:0005634);InterPro=Winged helix-like DNA-binding domain superfamily (IPR036388),Winged helix DNA-binding domain superfamily (IPR036390),Heat shock factor (HSF)-type%2C DNA-binding (IPR000232);Manual Curation=August 14%2C 2018;Literature_PMID=30080644,16202242;Oryzabase=8550;Expression=AY344488;TENOR=Os10t0419300-00;KEGG=Os10t0419300-00;Subcellular location=nucleus (GO:0005634) [mainly], cell membrane (GO:0005886)
Chr10	irgsp1_rep	five_prime_UTR	14749796	14749829	.	-	.	Parent=Os10t0419300-01
Chr10	irgsp1_rep	CDS	14749493	14749795	.	-	0	Parent=Os10t0419300-01
Chr10	irgsp1_rep	CDS	14747050	14747823	.	-	0	Parent=Os10t0419300-01
Chr10	irgsp1_rep	three_prime_UTR	14746825	14747049	.	-	.	Parent=Os10t0419300-01
Chr10	irgsp1_rep	mRNA	14746572	14750175	.	-	.	ID=Os10t0419300-02;Name=Os10t0419300-02;Locus_id=Os10g0419300;RAP-DB Gene Symbol Synonym(s)=OsHsfA6a;RAP-DB Gene Name Synonym(s)=Heat stress transcription factor A6a;CGSNL Gene Symbol=HSFA2C;CGSNL Gene Name=HEAT STRESS TRANSCRIPTION FACTOR A2C;Oryzabase Gene Symbol Synonym(s)=HSfA2c%2C OsHsfA2c%2C OsHsf-25%2C rHsf6%2C OsHSF6%2C HSF25%2C OsHSF25%2C HSF6%2C OsHsfA6a%2C HsfA6a;Oryzabase Gene Name Synonym(s)=Heat stress transcription factor A2c%2C Heat stress transcription factor A-2c%2C Heat stress transcription factor 25%2C Heat stress transcription factor 6;Note=Heat stress transcription factor%2C Splice variant of OsHsfA6a;Transcript_evidence=AK072391;ORF_evidence=Q338B0-2;NIAS_FLcDNA=J023077L03;Manual Curation=August 14%2C 2018;Literature_PMID=30080644;Oryzabase=8550
Chr10	irgsp1_rep	five_prime_UTR	14749493	14750175	.	-	.	Parent=Os10t0419300-02
Chr10	irgsp1_rep	five_prime_UTR	14747943	14748032	.	-	.	Parent=Os10t0419300-02
Chr10	irgsp1_rep	CDS	14747940	14747942	.	-	0	Parent=Os10t0419300-02
Chr10	irgsp1_rep	CDS	14747050	14747823	.	-	0	Parent=Os10t0419300-02
Chr10	irgsp1_rep	three_prime_UTR	14746977	14747049	.	-	.	Parent=Os10t0419300-02
Chr10	irgsp1_rep	three_prime_UTR	14746572	14746886	.	-	.	Parent=Os10t0419300-02
Chr10	irgsp1_rep	mRNA	14751991	14754323	.	-	.	ID=Os10t0419400-01;Name=Os10t0419400-01;Locus_id=Os10g0419400;RAP-DB Gene Symbol Synonym(s)=OsARD1%2C sip2;RAP-DB Gene Name Synonym(s)=acireductone dioxygenase 1%2C submergence-induced protein 2;CGSNL Gene Symbol=SIP2;CGSNL Gene Name=SUBMERGENCE-INDUCED PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=Sip2%2C OsARD1%2C ARD1%2C OsIDI1%2C IDI1%2C OsIDI1L/OsARD1;Oryzabase Gene Name Synonym(s)=submergence-induced protein 2%2C submergence-induced protein2%2C acireductone dioxygenase 1;Note=Acireductone dioxygenase%2C Ethylene synthesis%2C Abiotic stress response;Transcript_evidence=AK102331,AK103834;ORF_evidence=A1L4T4;GO=Biological Process: L-methionine salvage from methylthioadenosine (GO:0019509),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: acireductone dioxygenase [iron(II)-requiring] activity (GO:0010309),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=RmlC-like jelly roll fold (IPR014710),RmlC-like cupin domain superfamily (IPR011051),Acireductone dioxygenase ARD family (IPR004313),1%2C2-dihydroxy-3-keto-5-methylthiopentene dioxygenase%2C eukaryotes (IPR027496);NIAS_FLcDNA=J033090N01,J033148E16;Manual Curation=October 28%2C 2019;Literature_PMID=31552078,16297065;Oryzabase=11069;Expression=AK102331;TENOR=Os10t0419400-01;KEGG=Os10t0419400-01 (EC:1.13.11.53%2C EC:1.13.11.54);Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737)
Chr10	irgsp1_rep	five_prime_UTR	14754234	14754323	.	-	.	Parent=Os10t0419400-01
Chr10	irgsp1_rep	CDS	14754216	14754233	.	-	0	Parent=Os10t0419400-01
Chr10	irgsp1_rep	CDS	14753454	14753565	.	-	0	Parent=Os10t0419400-01
Chr10	irgsp1_rep	CDS	14753248	14753342	.	-	2	Parent=Os10t0419400-01
Chr10	irgsp1_rep	CDS	14753014	14753128	.	-	0	Parent=Os10t0419400-01
Chr10	irgsp1_rep	CDS	14752779	14752903	.	-	2	Parent=Os10t0419400-01
Chr10	irgsp1_rep	CDS	14752365	14752435	.	-	0	Parent=Os10t0419400-01
Chr10	irgsp1_rep	CDS	14752200	14752263	.	-	1	Parent=Os10t0419400-01
Chr10	irgsp1_rep	three_prime_UTR	14751991	14752199	.	-	.	Parent=Os10t0419400-01
Chr10	irgsp1_rep	mRNA	14757127	14759763	.	-	.	ID=Os10t0419500-01;Name=Os10t0419500-01;Locus_id=Os10g0419500;RAP-DB Gene Symbol Synonym(s)=OsARD4;RAP-DB Gene Name Synonym(s)=acireductone dioxygenase 4;CGSNL Gene Symbol=ARD4;CGSNL Gene Name=ACIREDUCTONE DIOXYGENASE 4;Oryzabase Gene Symbol Synonym(s)=OsARD4;Oryzabase Gene Name Synonym(s)=acireductone dioxygenase 4;Note=Acireductone dioxygenase%2C Promotion of crown/lateral root development%2C Modulation of the root growth pattern;Transcript_evidence=AK071316;ORF_evidence=Q7XEJ5;GO=Biological Process: L-methionine salvage from methylthioadenosine (GO:0019509),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: acireductone dioxygenase [iron(II)-requiring] activity (GO:0010309),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=RmlC-like jelly roll fold (IPR014710),RmlC-like cupin domain superfamily (IPR011051),Acireductone dioxygenase ARD family (IPR004313),1%2C2-dihydroxy-3-keto-5-methylthiopentene dioxygenase%2C eukaryotes (IPR027496);NIAS_FLcDNA=J023083J21;Manual Curation=October 31%2C 2018;Literature_PMID=30356087;Oryzabase=22659;Expression=AK071316;TENOR=Os10t0419500-01;KEGG=Os10t0419500-01 (EC:1.13.11.53 EC:1.13.11.54)
Chr10	irgsp1_rep	five_prime_UTR	14759489	14759763	.	-	.	Parent=Os10t0419500-01
Chr10	irgsp1_rep	CDS	14759477	14759488	.	-	0	Parent=Os10t0419500-01
Chr10	irgsp1_rep	CDS	14759292	14759370	.	-	0	Parent=Os10t0419500-01
Chr10	irgsp1_rep	CDS	14758438	14758532	.	-	2	Parent=Os10t0419500-01
Chr10	irgsp1_rep	CDS	14758107	14758346	.	-	0	Parent=Os10t0419500-01
Chr10	irgsp1_rep	CDS	14757421	14757549	.	-	0	Parent=Os10t0419500-01
Chr10	irgsp1_rep	three_prime_UTR	14757127	14757420	.	-	.	Parent=Os10t0419500-01
Chr10	irgsp1_rep	mRNA	14763501	14765095	.	-	.	ID=Os10t0419600-00;Name=Os10t0419600-00;Locus_id=Os10g0419600;CGSNL Gene Symbol=CHL;CGSNL Gene Name=CHLOROPHYLL A DEGRADING ENZYME;Oryzabase Gene Symbol Synonym(s)=OsCHL;Oryzabase Gene Name Synonym(s)=Chlorophyllase%2C Chlase;Note=Chlorophyllase family protein.;Transcript_evidence=CU406849 (DDBJ%2C Best hit);ORF_evidence=B6U4J0 (UniProt);GO=Biological Process: chlorophyll catabolic process (GO:0015996),Biological Process: lipid catabolic process (GO:0016042),Cellular Component: intracellular membrane-bounded organelle (GO:0043231),Molecular Function: 1-alkyl-2-acetylglycerophosphocholine esterase activity (GO:0003847),Molecular Function: chlorophyllase activity (GO:0047746);InterPro=Platelet-activating factor acetylhydrolase%2C plasma/intracellular isoform II (IPR005065),Chlorophyllase (IPR010821),Chlorophyllase%2C chloroplast (IPR017395);Oryzabase=7163;TENOR=Os10t0419600-00;KEGG=Os10t0419600-00
Chr10	irgsp1_rep	five_prime_UTR	14764992	14765095	.	-	.	Parent=Os10t0419600-00
Chr10	irgsp1_rep	CDS	14764611	14764991	.	-	0	Parent=Os10t0419600-00
Chr10	irgsp1_rep	CDS	14763646	14764374	.	-	0	Parent=Os10t0419600-00
Chr10	irgsp1_rep	three_prime_UTR	14763501	14763645	.	-	.	Parent=Os10t0419600-00
Chr10	irgsp1_rep	mRNA	14768103	14769443	.	-	.	ID=Os10t0419700-00;Name=Os10t0419700-00;Locus_id=Os10g0419700;Note=Epidermal growth factor-like%2C type 3 domain containing protein.;Transcript_evidence=EU976861 (DDBJ);ORF_evidence=Q7XEJ3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Epidermal growth factor-like%2C type 3 (IPR000742),Epidermal growth factor-like (IPR006210);TENOR=Os10t0419700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	14769059	14769443	.	-	0	Parent=Os10t0419700-00
Chr10	irgsp1_rep	CDS	14768876	14768941	.	-	2	Parent=Os10t0419700-00
Chr10	irgsp1_rep	CDS	14768103	14768281	.	-	2	Parent=Os10t0419700-00
Chr10	irgsp1_rep	mRNA	14776502	14779007	.	-	.	ID=Os10t0420000-01;Name=Os10t0420000-01;Locus_id=Os10g0420000;Note=Conserved hypothetical protein.;Transcript_evidence=AK106414 (DDBJ%2C Best hit);ORF_evidence=B9G5S5 (UniProt);NIAS_FLcDNA=002-103-A04;Expression=AK106414;TENOR=Os10t0420000-01;KEGG=Os10t0420000-01
Chr10	irgsp1_rep	five_prime_UTR	14779007	14779007	.	-	.	Parent=Os10t0420000-01
Chr10	irgsp1_rep	CDS	14778857	14779006	.	-	0	Parent=Os10t0420000-01
Chr10	irgsp1_rep	CDS	14778703	14778763	.	-	0	Parent=Os10t0420000-01
Chr10	irgsp1_rep	CDS	14778534	14778572	.	-	2	Parent=Os10t0420000-01
Chr10	irgsp1_rep	CDS	14777546	14777658	.	-	2	Parent=Os10t0420000-01
Chr10	irgsp1_rep	CDS	14777185	14777453	.	-	0	Parent=Os10t0420000-01
Chr10	irgsp1_rep	CDS	14776779	14776857	.	-	1	Parent=Os10t0420000-01
Chr10	irgsp1_rep	three_prime_UTR	14776502	14776778	.	-	.	Parent=Os10t0420000-01
Chr10	irgsp1_rep	mRNA	14784731	14786800	.	+	.	ID=Os10t0420200-01;Name=Os10t0420200-01;Locus_id=Os10g0420200;Note=IQ calmodulin-binding region domain containing protein.;Transcript_evidence=AK110922 (DDBJ%2C Best hit);ORF_evidence=Q7XEI9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);NIAS_FLcDNA=002-173-D03;Expression=AK110922;TENOR=Os10t0420200-01;KEGG=Os10t0420200-01
Chr10	irgsp1_rep	five_prime_UTR	14784731	14785116	.	+	.	Parent=Os10t0420200-01
Chr10	irgsp1_rep	CDS	14785117	14785536	.	+	0	Parent=Os10t0420200-01
Chr10	irgsp1_rep	CDS	14785621	14785866	.	+	0	Parent=Os10t0420200-01
Chr10	irgsp1_rep	CDS	14785930	14785985	.	+	0	Parent=Os10t0420200-01
Chr10	irgsp1_rep	CDS	14786358	14786658	.	+	1	Parent=Os10t0420200-01
Chr10	irgsp1_rep	three_prime_UTR	14786659	14786800	.	+	.	Parent=Os10t0420200-01
Chr10	irgsp1_rep	mRNA	14785929	14786601	.	-	.	ID=Os10t0420266-00;Name=Os10t0420266-00;Locus_id=Os10g0420266;Note=Hypothetical protein.;Transcript_evidence=EU948900 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0420266-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	14786071	14786601	.	-	0	Parent=Os10t0420266-00
Chr10	irgsp1_rep	CDS	14785929	14786015	.	-	0	Parent=Os10t0420266-00
Chr10	irgsp1_rep	mRNA	14795854	14799244	.	-	.	ID=Os10t0420332-00;Name=Os10t0420332-00;Locus_id=Os10g0420332;Note=Hypothetical protein.;Transcript_evidence=tplb0046b02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0420332-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	14798950	14799244	.	-	.	Parent=Os10t0420332-00
Chr10	irgsp1_rep	five_prime_UTR	14798560	14798824	.	-	.	Parent=Os10t0420332-00
Chr10	irgsp1_rep	five_prime_UTR	14796693	14796807	.	-	.	Parent=Os10t0420332-00
Chr10	irgsp1_rep	CDS	14796279	14796692	.	-	0	Parent=Os10t0420332-00
Chr10	irgsp1_rep	CDS	14795854	14796191	.	-	0	Parent=Os10t0420332-00
Chr10	irgsp1_rep	mRNA	14798144	14800301	.	+	.	ID=Os10t0420400-01;Name=Os10t0420400-01;Locus_id=Os10g0420400;CGSNL Gene Symbol=SULTR3%3B1;CGSNL Gene Name=SULPHATE TRANSPORTER 3%3B1;Oryzabase Gene Symbol Synonym(s)=OsSultr3%3B1%2C OsSul3%3B1;Oryzabase Gene Name Synonym(s)=sulphate transporter 3%3B1;Note=Similar to Sulfate transporter 3.1 (AST12) (AtST1).;Transcript_evidence=AK107671 (DDBJ%2C Best hit);ORF_evidence=C7C5T9 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215);InterPro=Sulphate transporter/antisigma-factor antagonist STAS (IPR002645),Sulphate transporter (IPR011547);NIAS_FLcDNA=002-131-H09;Oryzabase=9320;Expression=AK107671;TENOR=Os10t0420400-01;KEGG=Os10t0420400-01
Chr10	irgsp1_rep	five_prime_UTR	14798144	14798198	.	+	.	Parent=Os10t0420400-01
Chr10	irgsp1_rep	CDS	14798199	14798363	.	+	0	Parent=Os10t0420400-01
Chr10	irgsp1_rep	CDS	14798474	14798590	.	+	0	Parent=Os10t0420400-01
Chr10	irgsp1_rep	CDS	14798698	14798824	.	+	0	Parent=Os10t0420400-01
Chr10	irgsp1_rep	CDS	14798951	14799237	.	+	2	Parent=Os10t0420400-01
Chr10	irgsp1_rep	CDS	14799372	14799562	.	+	0	Parent=Os10t0420400-01
Chr10	irgsp1_rep	CDS	14799676	14799761	.	+	1	Parent=Os10t0420400-01
Chr10	irgsp1_rep	CDS	14799890	14799966	.	+	2	Parent=Os10t0420400-01
Chr10	irgsp1_rep	CDS	14800074	14800262	.	+	0	Parent=Os10t0420400-01
Chr10	irgsp1_rep	three_prime_UTR	14800263	14800301	.	+	.	Parent=Os10t0420400-01
Chr10	irgsp1_rep	mRNA	14822472	14829980	.	+	.	ID=Os10t0420800-01;Name=Os10t0420800-01;Locus_id=Os10g0420800;Note=Similar to cDNA clone:J013149A17%2C full insert sequence.;Transcript_evidence=AK288871 (DDBJ%2C Best hit);ORF_evidence=B7EEM3 (UniProt);NIAS_FLcDNA=J090078G09;TENOR=Os10t0420800-01;KEGG=Os10t0420800-01
Chr10	irgsp1_rep	five_prime_UTR	14822472	14823886	.	+	.	Parent=Os10t0420800-01
Chr10	irgsp1_rep	CDS	14823887	14824018	.	+	0	Parent=Os10t0420800-01
Chr10	irgsp1_rep	three_prime_UTR	14824019	14829980	.	+	.	Parent=Os10t0420800-01
Chr10	irgsp1_rep	mRNA	14831464	14839348	.	-	.	ID=Os10t0420900-01;Name=Os10t0420900-01;Locus_id=Os10g0420900;Note=Conserved hypothetical protein.;Transcript_evidence=AK066224 (DDBJ%2C Best hit);ORF_evidence=Q5ZA64 (UniProt);NIAS_FLcDNA=J013056G10;TENOR=Os10t0420900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	14839191	14839348	.	-	.	Parent=Os10t0420900-01
Chr10	irgsp1_rep	five_prime_UTR	14836308	14836371	.	-	.	Parent=Os10t0420900-01
Chr10	irgsp1_rep	five_prime_UTR	14836152	14836213	.	-	.	Parent=Os10t0420900-01
Chr10	irgsp1_rep	five_prime_UTR	14835972	14836063	.	-	.	Parent=Os10t0420900-01
Chr10	irgsp1_rep	five_prime_UTR	14831583	14835392	.	-	.	Parent=Os10t0420900-01
Chr10	irgsp1_rep	CDS	14831517	14831582	.	-	0	Parent=Os10t0420900-01
Chr10	irgsp1_rep	three_prime_UTR	14831464	14831516	.	-	.	Parent=Os10t0420900-01
Chr10	irgsp1_rep	mRNA	14864425	14864703	.	-	.	ID=Os10t0421400-00;Name=Os10t0421400-00;Locus_id=Os10g0421400;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XEH9 (UniProt);TENOR=Os10t0421400-00;KEGG=Os10t0421400-00
Chr10	irgsp1_rep	CDS	14864425	14864703	.	-	0	Parent=Os10t0421400-00
Chr10	irgsp1_rep	mRNA	14869094	14872480	.	-	.	ID=Os10t0421500-01;Name=Os10t0421500-01;Locus_id=Os10g0421500;Note=Similar to cDNA clone:J013149A17%2C full insert sequence.;Transcript_evidence=AK102513 (DDBJ%2C Best hit);ORF_evidence=B7EEM3 (UniProt);NIAS_FLcDNA=J033095I19;TENOR=Os10t0421500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	14872122	14872480	.	-	.	Parent=Os10t0421500-01
Chr10	irgsp1_rep	five_prime_UTR	14871271	14871281	.	-	.	Parent=Os10t0421500-01
Chr10	irgsp1_rep	CDS	14871214	14871270	.	-	0	Parent=Os10t0421500-01
Chr10	irgsp1_rep	CDS	14871045	14871116	.	-	0	Parent=Os10t0421500-01
Chr10	irgsp1_rep	CDS	14870885	14870941	.	-	0	Parent=Os10t0421500-01
Chr10	irgsp1_rep	CDS	14870783	14870788	.	-	0	Parent=Os10t0421500-01
Chr10	irgsp1_rep	three_prime_UTR	14870663	14870782	.	-	.	Parent=Os10t0421500-01
Chr10	irgsp1_rep	three_prime_UTR	14869094	14869944	.	-	.	Parent=Os10t0421500-01
Chr10	irgsp1_rep	mRNA	14869807	14872480	.	-	.	ID=Os10t0421500-02;Name=Os10t0421500-02;Locus_id=Os10g0421500;Note=Similar to cDNA clone:J033095I19%2C full insert sequence.;Transcript_evidence=AK068242 (DDBJ%2C Best hit);ORF_evidence=B7ET94 (UniProt);NIAS_FLcDNA=J013149A17;Expression=AK068242;TENOR=Os10t0421500-02;KEGG=Os10t0421500-02
Chr10	irgsp1_rep	five_prime_UTR	14872122	14872480	.	-	.	Parent=Os10t0421500-02
Chr10	irgsp1_rep	five_prime_UTR	14871271	14871281	.	-	.	Parent=Os10t0421500-02
Chr10	irgsp1_rep	CDS	14871214	14871270	.	-	0	Parent=Os10t0421500-02
Chr10	irgsp1_rep	CDS	14870961	14871116	.	-	0	Parent=Os10t0421500-02
Chr10	irgsp1_rep	three_prime_UTR	14869807	14870960	.	-	.	Parent=Os10t0421500-02
Chr10	irgsp1_rep	mRNA	14897142	14900931	.	-	.	ID=Os10t0421800-01;Name=Os10t0421800-01;Locus_id=Os10g0421800;RAP-DB Gene Symbol Synonym(s)=TCD10;RAP-DB Gene Name Synonym(s)=thermo-sensitive chlorophyll-deficient 10;CGSNL Gene Symbol=TCD10;CGSNL Gene Name=THERMO-SENSITIVE CHLOROPHYLL-DEFICIENT 10;Oryzabase Gene Name Synonym(s)=thermo-sensitive chlorophyll-deficient 10;Note=Pentatricopeptide repeat (PPR) protein%2C Chloroplast development under cold stress;Transcript_evidence=AK119359 (truncated),Inferred from literature;ORF_evidence=Q338A4;GO=Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical domain superfamily (IPR011990),Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=001-131-G05 (truncated);Manual Curation=April 24%2C 2019;Literature_PMID=27910002;Oryzabase=21523;Expression=AK119359;TENOR=Os10t0421800-01;KEGG=Os10t0421800-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=chloroplast (GO:0009507) [mainly]
Chr10	irgsp1_rep	five_prime_UTR	14900804	14900931	.	-	.	Parent=Os10t0421800-01
Chr10	irgsp1_rep	five_prime_UTR	14900558	14900586	.	-	.	Parent=Os10t0421800-01
Chr10	irgsp1_rep	CDS	14897315	14900557	.	-	0	Parent=Os10t0421800-01
Chr10	irgsp1_rep	three_prime_UTR	14897142	14897314	.	-	.	Parent=Os10t0421800-01
Chr10	irgsp1_rep	mRNA	14904210	14906150	.	-	.	ID=Os10t0422000-01;Name=Os10t0422000-01;Locus_id=Os10g0422000;Note=Conserved hypothetical protein.;Transcript_evidence=AK063303 (DDBJ%2C Best hit);ORF_evidence=Q7XEH4 (UniProt);NIAS_FLcDNA=001-113-F05;Expression=AK063303;TENOR=Os10t0422000-01;KEGG=Os10t0422000-01
Chr10	irgsp1_rep	CDS	14906022	14906150	.	-	0	Parent=Os10t0422000-01
Chr10	irgsp1_rep	CDS	14904570	14905703	.	-	0	Parent=Os10t0422000-01
Chr10	irgsp1_rep	three_prime_UTR	14904210	14904569	.	-	.	Parent=Os10t0422000-01
Chr10	irgsp1_rep	mRNA	14904722	14905637	.	+	.	ID=Os10t0422050-00;Name=Os10t0422050-00;Locus_id=Os10g0422050;Note=Non-protein coding transcript.;Transcript_evidence=AK360519 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0422050-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	exon	14904722	14904878	.	+	.	Parent=Os10t0422050-00
Chr10	irgsp1_rep	exon	14904956	14905184	.	+	.	Parent=Os10t0422050-00
Chr10	irgsp1_rep	exon	14905274	14905637	.	+	.	Parent=Os10t0422050-00
Chr10	irgsp1_rep	mRNA	14907909	14911829	.	-	.	ID=Os10t0422075-00;Name=Os10t0422075-00;Locus_id=Os10g0422075;Note=Similar to Viral A-type inclusion protein repeat containing protein%2C expressed.;Transcript_evidence=EU943592 (DDBJ);ORF_evidence=Q10RF6 (UniProt);InterPro=Prefoldin (IPR009053),KIP1-like (IPR011684);TENOR=Os10t0422075-00
Chr10	irgsp1_rep	CDS	14911682	14911829	.	-	0	Parent=Os10t0422075-00
Chr10	irgsp1_rep	CDS	14907909	14910997	.	-	2	Parent=Os10t0422075-00
Chr10	irgsp1_rep	mRNA	14921925	14925012	.	+	.	ID=Os10t0422200-01;Name=Os10t0422200-01;Locus_id=Os10g0422200;CGSNL Gene Symbol=HMT1;CGSNL Gene Name=HOMOCYSTEINE METHYLTRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=OsaHMT1%2C OsHMT1;Oryzabase Gene Name Synonym(s)=homocysteine methyltransferase 1;Note=Similar to Homocysteine S-methyltransferase 3 (EC 2.1.1.10) (S- methylmethionine:homocysteine methyltransferase 3) (SMM:Hcy S- methyltransferase 3) (ZmHMT-3).;Transcript_evidence=AK103743 (DDBJ%2C Best hit);ORF_evidence=XP_002307602.1 (RefSeq);GO=Molecular Function: homocysteine S-methyltransferase activity (GO:0008898);InterPro=Homocysteine S-methyltransferase (IPR003726);NIAS_FLcDNA=J033138N02;Oryzabase=22910;Expression=AK103743;TENOR=Os10t0422200-01;KEGG=Os10t0422200-01 (EC:2.1.1.10)
Chr10	irgsp1_rep	five_prime_UTR	14921925	14922063	.	+	.	Parent=Os10t0422200-01
Chr10	irgsp1_rep	CDS	14922064	14922240	.	+	0	Parent=Os10t0422200-01
Chr10	irgsp1_rep	CDS	14922931	14922987	.	+	0	Parent=Os10t0422200-01
Chr10	irgsp1_rep	CDS	14923071	14923297	.	+	0	Parent=Os10t0422200-01
Chr10	irgsp1_rep	CDS	14923443	14923572	.	+	1	Parent=Os10t0422200-01
Chr10	irgsp1_rep	CDS	14924020	14924223	.	+	0	Parent=Os10t0422200-01
Chr10	irgsp1_rep	CDS	14924299	14924370	.	+	0	Parent=Os10t0422200-01
Chr10	irgsp1_rep	CDS	14924640	14924780	.	+	0	Parent=Os10t0422200-01
Chr10	irgsp1_rep	three_prime_UTR	14924781	14925012	.	+	.	Parent=Os10t0422200-01
Chr10	irgsp1_rep	mRNA	14922006	14925034	.	+	.	ID=Os10t0422200-02;Name=Os10t0422200-02;Locus_id=Os10g0422200;CGSNL Gene Symbol=HMT1;CGSNL Gene Name=HOMOCYSTEINE METHYLTRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=OsaHMT1%2C OsHMT1;Oryzabase Gene Name Synonym(s)=homocysteine methyltransferase 1;Note=Similar to Homocysteine S-methyltransferase 3 (EC 2.1.1.10) (S- methylmethionine:homocysteine methyltransferase 3) (SMM:Hcy S- methyltransferase 3) (ZmHMT-3).;Transcript_evidence=AK063962 (DDBJ%2C Best hit),AK102020 (DDBJ%2C Best hit);ORF_evidence=XP_002307602.1 (RefSeq);GO=Molecular Function: homocysteine S-methyltransferase activity (GO:0008898);InterPro=Homocysteine S-methyltransferase (IPR003726);NIAS_FLcDNA=001-123-H11,J033080I03;Oryzabase=22910;TENOR=Os10t0422200-02
Chr10	irgsp1_rep	five_prime_UTR	14922006	14922063	.	+	.	Parent=Os10t0422200-02
Chr10	irgsp1_rep	CDS	14922064	14922240	.	+	0	Parent=Os10t0422200-02
Chr10	irgsp1_rep	CDS	14922931	14922987	.	+	0	Parent=Os10t0422200-02
Chr10	irgsp1_rep	CDS	14923071	14923297	.	+	0	Parent=Os10t0422200-02
Chr10	irgsp1_rep	CDS	14923443	14923572	.	+	1	Parent=Os10t0422200-02
Chr10	irgsp1_rep	CDS	14924020	14924223	.	+	0	Parent=Os10t0422200-02
Chr10	irgsp1_rep	CDS	14924299	14924370	.	+	0	Parent=Os10t0422200-02
Chr10	irgsp1_rep	CDS	14924640	14924780	.	+	0	Parent=Os10t0422200-02
Chr10	irgsp1_rep	three_prime_UTR	14924781	14925034	.	+	.	Parent=Os10t0422200-02
Chr10	irgsp1_rep	mRNA	14926013	14928966	.	+	.	ID=Os10t0422300-00;Name=Os10t0422300-00;Locus_id=Os10g0422300;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=BT060911 (DDBJ);ORF_evidence=B9G5T1 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);TENOR=Os10t0422300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	14926013	14927455	.	+	0	Parent=Os10t0422300-00
Chr10	irgsp1_rep	three_prime_UTR	14927456	14927464	.	+	.	Parent=Os10t0422300-00
Chr10	irgsp1_rep	three_prime_UTR	14928390	14928618	.	+	.	Parent=Os10t0422300-00
Chr10	irgsp1_rep	three_prime_UTR	14928739	14928966	.	+	.	Parent=Os10t0422300-00
Chr10	irgsp1_rep	mRNA	14928862	14929838	.	-	.	ID=Os10t0422401-01;Name=Os10t0422401-01;Locus_id=Os10g0422401;Note=Similar to T6D22.22.;Transcript_evidence=AK242344 (DDBJ%2C Best hit);ORF_evidence=Q9LMZ5 (UniProt);NIAS_FLcDNA=J080007J11;TENOR=Os10t0422401-01;KEGG=Os10t0422401-01
Chr10	irgsp1_rep	five_prime_UTR	14929648	14929838	.	-	.	Parent=Os10t0422401-01
Chr10	irgsp1_rep	CDS	14929554	14929647	.	-	0	Parent=Os10t0422401-01
Chr10	irgsp1_rep	CDS	14929450	14929454	.	-	2	Parent=Os10t0422401-01
Chr10	irgsp1_rep	three_prime_UTR	14929382	14929449	.	-	.	Parent=Os10t0422401-01
Chr10	irgsp1_rep	three_prime_UTR	14928862	14928887	.	-	.	Parent=Os10t0422401-01
Chr10	irgsp1_rep	mRNA	14944271	14949000	.	+	.	ID=Os10t0422500-01;Name=Os10t0422500-01;Locus_id=Os10g0422500;Note=Endonuclease/exonuclease/phosphatase domain containing protein.;Transcript_evidence=AK119814 (DDBJ%2C Best hit);ORF_evidence=NP_001151627.1 (RefSeq);GO=Molecular Function: inositol or phosphatidylinositol phosphatase activity (GO:0004437);InterPro=Inositol polyphosphate-related phosphatase (IPR000300),Endonuclease/exonuclease/phosphatase (IPR005135);NIAS_FLcDNA=002-177-A06;TENOR=Os10t0422500-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	14944271	14944608	.	+	.	Parent=Os10t0422500-01
Chr10	irgsp1_rep	CDS	14944609	14944635	.	+	0	Parent=Os10t0422500-01
Chr10	irgsp1_rep	CDS	14944787	14944886	.	+	0	Parent=Os10t0422500-01
Chr10	irgsp1_rep	CDS	14945248	14945325	.	+	2	Parent=Os10t0422500-01
Chr10	irgsp1_rep	CDS	14945512	14945599	.	+	2	Parent=Os10t0422500-01
Chr10	irgsp1_rep	CDS	14945708	14945812	.	+	1	Parent=Os10t0422500-01
Chr10	irgsp1_rep	CDS	14946170	14946712	.	+	1	Parent=Os10t0422500-01
Chr10	irgsp1_rep	CDS	14946865	14947000	.	+	1	Parent=Os10t0422500-01
Chr10	irgsp1_rep	CDS	14947139	14947329	.	+	0	Parent=Os10t0422500-01
Chr10	irgsp1_rep	CDS	14947428	14947536	.	+	1	Parent=Os10t0422500-01
Chr10	irgsp1_rep	CDS	14947750	14947898	.	+	0	Parent=Os10t0422500-01
Chr10	irgsp1_rep	CDS	14947972	14948218	.	+	1	Parent=Os10t0422500-01
Chr10	irgsp1_rep	three_prime_UTR	14948219	14949000	.	+	.	Parent=Os10t0422500-01
Chr10	irgsp1_rep	mRNA	14956178	14959713	.	-	.	ID=Os10t0422566-01;Name=Os10t0422566-01;Locus_id=Os10g0422566;Note=Similar to predicted protein.;Transcript_evidence=AK288375 (DDBJ%2C Best hit);ORF_evidence=NP_171809.1 (RefSeq);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J090026H06;TENOR=Os10t0422566-01;KEGG=Os10t0422566-01
Chr10	irgsp1_rep	five_prime_UTR	14959609	14959713	.	-	.	Parent=Os10t0422566-01
Chr10	irgsp1_rep	five_prime_UTR	14958677	14958680	.	-	.	Parent=Os10t0422566-01
Chr10	irgsp1_rep	CDS	14956361	14958676	.	-	0	Parent=Os10t0422566-01
Chr10	irgsp1_rep	three_prime_UTR	14956178	14956360	.	-	.	Parent=Os10t0422566-01
Chr10	irgsp1_rep	mRNA	14956359	14958683	.	+	.	ID=Os10t0422583-00;Name=Os10t0422583-00;Locus_id=Os10g0422583;Note=Hypothetical protein.;Transcript_evidence=tplb0062n13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0422583-00
Chr10	irgsp1_rep	five_prime_UTR	14956359	14958088	.	+	.	Parent=Os10t0422583-00
Chr10	irgsp1_rep	CDS	14958089	14958436	.	+	0	Parent=Os10t0422583-00
Chr10	irgsp1_rep	three_prime_UTR	14958437	14958683	.	+	.	Parent=Os10t0422583-00
Chr10	irgsp1_rep	mRNA	14960588	14962880	.	-	.	ID=Os10t0422600-01;Name=Os10t0422600-01;Locus_id=Os10g0422600;Note=Protein of unknown function DUF581 family protein.;Transcript_evidence=AK109893 (DDBJ%2C Best hit);ORF_evidence=B8BGX0 (UniProt);InterPro=Protein of unknown function DUF581 (IPR007650);NIAS_FLcDNA=002-149-E09;Expression=AK109893;TENOR=Os10t0422600-01;KEGG=Os10t0422600-01
Chr10	irgsp1_rep	five_prime_UTR	14962797	14962880	.	-	.	Parent=Os10t0422600-01
Chr10	irgsp1_rep	CDS	14962705	14962796	.	-	0	Parent=Os10t0422600-01
Chr10	irgsp1_rep	CDS	14961713	14962582	.	-	1	Parent=Os10t0422600-01
Chr10	irgsp1_rep	CDS	14961081	14961156	.	-	1	Parent=Os10t0422600-01
Chr10	irgsp1_rep	three_prime_UTR	14960588	14961080	.	-	.	Parent=Os10t0422600-01
Chr10	irgsp1_rep	mRNA	14974639	14976372	.	-	.	ID=Os10t0422700-01;Name=Os10t0422700-01;Locus_id=Os10g0422700;Note=Conserved hypothetical protein.;Transcript_evidence=AK109674 (DDBJ%2C Best hit);ORF_evidence=B8BGX2 (UniProt);NIAS_FLcDNA=002-145-B06;TENOR=Os10t0422700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	14976169	14976372	.	-	.	Parent=Os10t0422700-01
Chr10	irgsp1_rep	CDS	14976089	14976168	.	-	0	Parent=Os10t0422700-01
Chr10	irgsp1_rep	CDS	14975431	14975980	.	-	1	Parent=Os10t0422700-01
Chr10	irgsp1_rep	three_prime_UTR	14974639	14975430	.	-	.	Parent=Os10t0422700-01
Chr10	irgsp1_rep	mRNA	14979873	14980665	.	+	.	ID=Os10t0422800-01;Name=Os10t0422800-01;Locus_id=Os10g0422800;Note=Protein of unknown function DUF1677%2C plant domain containing protein.;Transcript_evidence=AK072418 (DDBJ%2C Best hit);ORF_evidence=A2Z7F6 (UniProt);InterPro=Protein of unknown function DUF1677%2C plant (IPR012876);NIAS_FLcDNA=J023082F14;TENOR=Os10t0422800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	14979873	14979947	.	+	.	Parent=Os10t0422800-01
Chr10	irgsp1_rep	CDS	14979948	14980265	.	+	0	Parent=Os10t0422800-01
Chr10	irgsp1_rep	three_prime_UTR	14980266	14980665	.	+	.	Parent=Os10t0422800-01
Chr10	irgsp1_rep	mRNA	14983512	14986232	.	-	.	ID=Os10t0423000-01;Name=Os10t0423000-01;Locus_id=Os10g0423000;Note=Conserved hypothetical protein.;Transcript_evidence=AK103624 (DDBJ%2C Best hit);ORF_evidence=B9G5T7 (UniProt);NIAS_FLcDNA=J033133N14;TENOR=Os10t0423000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	14986231	14986232	.	-	.	Parent=Os10t0423000-01
Chr10	irgsp1_rep	CDS	14986027	14986230	.	-	0	Parent=Os10t0423000-01
Chr10	irgsp1_rep	CDS	14985800	14985930	.	-	0	Parent=Os10t0423000-01
Chr10	irgsp1_rep	CDS	14985407	14985440	.	-	1	Parent=Os10t0423000-01
Chr10	irgsp1_rep	three_prime_UTR	14983862	14985406	.	-	.	Parent=Os10t0423000-01
Chr10	irgsp1_rep	three_prime_UTR	14983512	14983769	.	-	.	Parent=Os10t0423000-01
Chr10	irgsp1_rep	mRNA	15003427	15004575	.	+	.	ID=Os10t0423300-00;Name=Os10t0423300-00;Locus_id=Os10g0423300;Oryzabase Gene Symbol Synonym(s)=OsMB40%2C MB40;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 40%2C MDC protein with a BTB domain 40%2C MDC protein having BTB domain 40;Note=Similar to BTB/POZ domain containing protein.;Transcript_evidence=AK248323 (DDBJ);ORF_evidence=Q7XEG4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);Oryzabase=21234;TENOR=Os10t0423300-00;KEGG=Os10t0423300-00
Chr10	irgsp1_rep	CDS	15003427	15004575	.	+	0	Parent=Os10t0423300-00
Chr10	irgsp1_rep	mRNA	15006162	15012324	.	-	.	ID=Os10t0423400-00;Name=Os10t0423400-00;Locus_id=Os10g0423400;Oryzabase Gene Symbol Synonym(s)=OsMB41%2C MB41%2C OsMB48%2C MB48;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 41%2C MDC protein with a BTB domain 41%2C MDC protein having BTB domain 41%2C MATH-BTB protein 48%2C MDC protein with a BTB domain 48%2C MDC protein having BTB domain 48;Note=Similar to BTB/POZ domain containing protein.;Transcript_evidence=AK376687 (DDBJ);ORF_evidence=Q337Z5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);Oryzabase=21235,21242;TENOR=Os10t0423400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	15011932	15012324	.	-	0	Parent=Os10t0423400-00
Chr10	irgsp1_rep	CDS	15010960	15011412	.	-	0	Parent=Os10t0423400-00
Chr10	irgsp1_rep	CDS	15006162	15006488	.	-	0	Parent=Os10t0423400-00
Chr10	irgsp1_rep	mRNA	15008566	15009237	.	-	.	ID=Os10t0423501-00;Name=Os10t0423501-00;Locus_id=Os10g0423501;Note=Conserved hypothetical protein.;Transcript_evidence=AK107764 (DDBJ%2C Secondary hit);ORF_evidence=Q7XQP0 (UniProt);TENOR=Os10t0423501-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	15008953	15009237	.	-	0	Parent=Os10t0423501-00
Chr10	irgsp1_rep	three_prime_UTR	15008679	15008952	.	-	.	Parent=Os10t0423501-00
Chr10	irgsp1_rep	three_prime_UTR	15008566	15008669	.	-	.	Parent=Os10t0423501-00
Chr10	irgsp1_rep	mRNA	15015502	15016829	.	+	.	ID=Os10t0423700-00;Name=Os10t0423700-00;Locus_id=Os10g0423700;Oryzabase Gene Symbol Synonym(s)=OsMB33%2C MB33;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 33%2C MDC protein with a BTB domain 33%2C MDC protein having BTB domain 33;Note=Conserved hypothetical protein.;Transcript_evidence=AK335712 (DDBJ);ORF_evidence=A3C4W4 (UniProt);Oryzabase=21227;TENOR=Os10t0423700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	15015502	15016268	.	+	.	Parent=Os10t0423700-00
Chr10	irgsp1_rep	CDS	15016269	15016829	.	+	0	Parent=Os10t0423700-00
Chr10	irgsp1_rep	mRNA	15019919	15021149	.	-	.	ID=Os10t0423800-00;Name=Os10t0423800-00;Locus_id=Os10g0423800;Note=Similar to BTB/POZ domain containing protein.;Transcript_evidence=AK376276 (DDBJ);ORF_evidence=Q7XEG1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);TENOR=Os10t0423800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	15021107	15021149	.	-	.	Parent=Os10t0423800-00
Chr10	irgsp1_rep	CDS	15019919	15021106	.	-	0	Parent=Os10t0423800-00
Chr10	irgsp1_rep	mRNA	15025823	15026947	.	+	.	ID=Os10t0423900-00;Name=Os10t0423900-00;Locus_id=Os10g0423900;Note=BTB/POZ-like domain containing protein.;Transcript_evidence=AK376687 (DDBJ);ORF_evidence=NP_001064638.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);TENOR=Os10t0423900-00
Chr10	irgsp1_rep	CDS	15025823	15026947	.	+	0	Parent=Os10t0423900-00
Chr10	irgsp1_rep	mRNA	15036436	15037117	.	+	.	ID=Os10t0424100-00;Name=Os10t0424100-00;Locus_id=Os10g0424100;Note=Similar to BTB/POZ domain containing protein.;Transcript_evidence=EU360467 (DDBJ);ORF_evidence=Q7XEF7 (UniProt);TENOR=Os10t0424100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	15036436	15036778	.	+	.	Parent=Os10t0424100-00
Chr10	irgsp1_rep	CDS	15036779	15037117	.	+	0	Parent=Os10t0424100-00
Chr10	irgsp1_rep	mRNA	15044042	15045403	.	+	.	ID=Os10t0424400-00;Name=Os10t0424400-00;Locus_id=Os10g0424400;Oryzabase Gene Symbol Synonym(s)=OsMB28%2C MB28;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 28%2C MDC protein with a BTB domain 28%2C MDC protein having BTB domain 28;Note=Conserved hypothetical protein.;Transcript_evidence=CT835788 (DDBJ%2C Best hit);ORF_evidence=A2Z7G8 (UniProt);Oryzabase=21222;TENOR=Os10t0424400-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	15044042	15044742	.	+	.	Parent=Os10t0424400-00
Chr10	irgsp1_rep	CDS	15044743	15045183	.	+	0	Parent=Os10t0424400-00
Chr10	irgsp1_rep	three_prime_UTR	15045184	15045403	.	+	.	Parent=Os10t0424400-00
Chr10	irgsp1_rep	mRNA	15058969	15059109	.	-	.	ID=Os10t0424733-00;Name=Os10t0424733-00;Locus_id=Os10g0424733;Note=Non-protein coding transcript.;Transcript_evidence=EU947769 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0424733-00
Chr10	irgsp1_rep	exon	15058969	15059109	.	-	.	Parent=Os10t0424733-00
Chr10	irgsp1_rep	mRNA	15079874	15080020	.	-	.	ID=Os10t0425066-00;Name=Os10t0425066-00;Locus_id=Os10g0425066;Note=Non-protein coding transcript.;Transcript_evidence=EU947769 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0425066-00
Chr10	irgsp1_rep	exon	15079874	15080020	.	-	.	Parent=Os10t0425066-00
Chr10	irgsp1_rep	mRNA	15102268	15103528	.	+	.	ID=Os10t0425400-01;Name=Os10t0425400-01;Locus_id=Os10g0425400;Oryzabase Gene Symbol Synonym(s)=OsSTA244;Note=BTB/POZ-like domain containing protein.;Transcript_evidence=AK071408 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);NIAS_FLcDNA=J023093D23;Oryzabase=19513;TENOR=Os10t0425400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	15102268	15103515	.	+	0	Parent=Os10t0425400-01
Chr10	irgsp1_rep	three_prime_UTR	15103516	15103528	.	+	.	Parent=Os10t0425400-01
Chr10	irgsp1_rep	mRNA	15124409	15125348	.	+	.	ID=Os10t0425700-00;Name=Os10t0425700-00;Locus_id=Os10g0425700;Oryzabase Gene Symbol Synonym(s)=OsMB26%2C MB26;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 26%2C MDC protein with a BTB domain 26%2C MDC protein having BTB domain 26;Note=MATH domain containing protein.;Transcript_evidence=tplb0003h03 (Wheat FLcDNA);ORF_evidence=GeneMark;GO=Molecular Function: protein binding (GO:0005515);InterPro=MATH (IPR002083),TRAF-like (IPR008974),TRAF-type (IPR013322);Oryzabase=21220;TENOR=Os10t0425700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	15124409	15124999	.	+	0	Parent=Os10t0425700-00
Chr10	irgsp1_rep	three_prime_UTR	15125000	15125348	.	+	.	Parent=Os10t0425700-00
Chr10	irgsp1_rep	mRNA	15138433	15140103	.	+	.	ID=Os10t0425900-01;Name=Os10t0425900-01;Locus_id=Os10g0425900;Oryzabase Gene Symbol Synonym(s)=OsMB24%2C MB24;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 24%2C MDC protein with a BTB domain 24%2C MDC protein having BTB domain 24;Note=Kelch related domain containing protein.;Transcript_evidence=AK107342 (DDBJ%2C Best hit);ORF_evidence=Q337Y9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);NIAS_FLcDNA=002-126-G04;Oryzabase=21218;Expression=AK107342;TENOR=Os10t0425900-01;KEGG=Os10t0425900-01
Chr10	irgsp1_rep	five_prime_UTR	15138433	15138545	.	+	.	Parent=Os10t0425900-01
Chr10	irgsp1_rep	CDS	15138546	15138936	.	+	0	Parent=Os10t0425900-01
Chr10	irgsp1_rep	CDS	15139036	15139145	.	+	2	Parent=Os10t0425900-01
Chr10	irgsp1_rep	CDS	15139283	15139771	.	+	0	Parent=Os10t0425900-01
Chr10	irgsp1_rep	three_prime_UTR	15139772	15140103	.	+	.	Parent=Os10t0425900-01
Chr10	irgsp1_rep	mRNA	15143674	15146040	.	-	.	ID=Os10t0426100-00;Name=Os10t0426100-00;Locus_id=Os10g0426100;Note=Similar to HAT family dimerisation domain containing protein.;Transcript_evidence=BT036163 (DDBJ);ORF_evidence=Q7XED8 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Zinc finger%2C BED-type predicted (IPR003656),HAT dimerisation (IPR008906),Ribonuclease H-like (IPR012337);TENOR=Os10t0426100-00
Chr10	irgsp1_rep	CDS	15143710	15146040	.	-	0	Parent=Os10t0426100-00
Chr10	irgsp1_rep	three_prime_UTR	15143674	15143709	.	-	.	Parent=Os10t0426100-00
Chr10	irgsp1_rep	mRNA	15146840	15156225	.	+	.	ID=Os10t0426300-00;Name=Os10t0426300-00;Locus_id=Os10g0426300;Note=Similar to Exonuclease family protein%2C expressed.;Transcript_evidence=FP096414 (DDBJ);ORF_evidence=Q7XET9 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: exonuclease activity (GO:0004527);InterPro=Exonuclease (IPR006055),Ribonuclease H-like (IPR012337),Exonuclease%2C RNase T/DNA polymerase III (IPR013520);TENOR=Os10t0426300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	15146840	15147197	.	+	0	Parent=Os10t0426300-00
Chr10	irgsp1_rep	CDS	15147980	15148137	.	+	2	Parent=Os10t0426300-00
Chr10	irgsp1_rep	CDS	15153385	15153431	.	+	0	Parent=Os10t0426300-00
Chr10	irgsp1_rep	CDS	15154213	15154276	.	+	1	Parent=Os10t0426300-00
Chr10	irgsp1_rep	CDS	15155192	15155610	.	+	0	Parent=Os10t0426300-00
Chr10	irgsp1_rep	CDS	15155991	15156225	.	+	1	Parent=Os10t0426300-00
Chr10	irgsp1_rep	mRNA	15146932	15156238	.	-	.	ID=Os10t0426450-00;Name=Os10t0426450-00;Locus_id=Os10g0426450;Note=Hypothetical protein.;Transcript_evidence=tplb0049m02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0426450-00
Chr10	irgsp1_rep	five_prime_UTR	15155970	15156238	.	-	.	Parent=Os10t0426450-00
Chr10	irgsp1_rep	five_prime_UTR	15155323	15155594	.	-	.	Parent=Os10t0426450-00
Chr10	irgsp1_rep	five_prime_UTR	15155174	15155267	.	-	.	Parent=Os10t0426450-00
Chr10	irgsp1_rep	five_prime_UTR	15154189	15154536	.	-	.	Parent=Os10t0426450-00
Chr10	irgsp1_rep	five_prime_UTR	15147978	15148166	.	-	.	Parent=Os10t0426450-00
Chr10	irgsp1_rep	five_prime_UTR	15147181	15147190	.	-	.	Parent=Os10t0426450-00
Chr10	irgsp1_rep	CDS	15146932	15147180	.	-	0	Parent=Os10t0426450-00
Chr10	irgsp1_rep	mRNA	15169318	15170883	.	-	.	ID=Os10t0426600-01;Name=Os10t0426600-01;Locus_id=Os10g0426600;Oryzabase Gene Symbol Synonym(s)=OsMB29%2C MB29;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 29%2C MDC protein with a BTB domain 29%2C MDC protein having BTB domain 29;Note=Conserved hypothetical protein.;Transcript_evidence=AK064697 (DDBJ%2C Best hit);ORF_evidence=A2Z7K0 (UniProt);NIAS_FLcDNA=002-116-G01;Oryzabase=21223;TENOR=Os10t0426600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	15170864	15170883	.	-	.	Parent=Os10t0426600-01
Chr10	irgsp1_rep	CDS	15170417	15170863	.	-	0	Parent=Os10t0426600-01
Chr10	irgsp1_rep	three_prime_UTR	15169318	15170416	.	-	.	Parent=Os10t0426600-01
Chr10	irgsp1_rep	mRNA	15169366	15170899	.	+	.	ID=Os10t0426700-01;Name=Os10t0426700-01;Locus_id=Os10g0426700;Note=Hypothetical protein.;Transcript_evidence=AK109772 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-147-A10;Expression=AK109772;TENOR=Os10t0426700-01;KEGG=Os10t0426700-01
Chr10	irgsp1_rep	five_prime_UTR	15169366	15169615	.	+	.	Parent=Os10t0426700-01
Chr10	irgsp1_rep	CDS	15169616	15170065	.	+	0	Parent=Os10t0426700-01
Chr10	irgsp1_rep	three_prime_UTR	15170066	15170899	.	+	.	Parent=Os10t0426700-01
Chr10	irgsp1_rep	mRNA	15186321	15191640	.	+	.	ID=Os10t0427100-01;Name=Os10t0427100-01;Locus_id=Os10g0427100;Note=Conserved hypothetical protein.;Transcript_evidence=AK120192 (DDBJ%2C Best hit);ORF_evidence=Q6Z4W5 (UniProt);NIAS_FLcDNA=J013035L11;TENOR=Os10t0427100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	15186321	15186630	.	+	.	Parent=Os10t0427100-01
Chr10	irgsp1_rep	CDS	15186631	15187027	.	+	0	Parent=Os10t0427100-01
Chr10	irgsp1_rep	CDS	15189701	15189705	.	+	2	Parent=Os10t0427100-01
Chr10	irgsp1_rep	three_prime_UTR	15189706	15191640	.	+	.	Parent=Os10t0427100-01
Chr10	irgsp1_rep	mRNA	15199437	15200799	.	+	.	ID=Os10t0427300-01;Name=Os10t0427300-01;Locus_id=Os10g0427300;Oryzabase Gene Symbol Synonym(s)=OsMB20%2C MB20%2C OsMB20a%2C OsMB20b%2C DLN234%2C OsDLN234;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 20%2C MDC protein with a BTB domain 20%2C MDC protein having BTB domain 20%2C DLN repressor 234%2C DLN motif protein 234;Note=Similar to BTB/POZ domain containing protein%2C expressed.;Transcript_evidence=AK070118 (DDBJ%2C Best hit);ORF_evidence=Q337Y6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);NIAS_FLcDNA=J023041D04;Oryzabase=21214;Expression=AK070118;TENOR=Os10t0427300-01;KEGG=Os10t0427300-01
Chr10	irgsp1_rep	five_prime_UTR	15199437	15199533	.	+	.	Parent=Os10t0427300-01
Chr10	irgsp1_rep	CDS	15199534	15200643	.	+	0	Parent=Os10t0427300-01
Chr10	irgsp1_rep	three_prime_UTR	15200644	15200799	.	+	.	Parent=Os10t0427300-01
Chr10	irgsp1_rep	mRNA	15199440	15202163	.	+	.	ID=Os10t0427300-02;Name=Os10t0427300-02;Locus_id=Os10g0427300;Oryzabase Gene Symbol Synonym(s)=OsMB20%2C MB20%2C OsMB20a%2C OsMB20b%2C DLN234%2C OsDLN234;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 20%2C MDC protein with a BTB domain 20%2C MDC protein having BTB domain 20%2C DLN repressor 234%2C DLN motif protein 234;Note=Similar to BTB/POZ domain containing protein%2C expressed.;Transcript_evidence=AK119384 (DDBJ%2C Best hit);ORF_evidence=Q337Y6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);NIAS_FLcDNA=001-132-B10;Oryzabase=21214;TENOR=Os10t0427300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	15199440	15199533	.	+	.	Parent=Os10t0427300-02
Chr10	irgsp1_rep	CDS	15199534	15200638	.	+	0	Parent=Os10t0427300-02
Chr10	irgsp1_rep	CDS	15200711	15200733	.	+	2	Parent=Os10t0427300-02
Chr10	irgsp1_rep	three_prime_UTR	15200734	15202163	.	+	.	Parent=Os10t0427300-02
Chr10	irgsp1_rep	mRNA	15213689	15215127	.	+	.	ID=Os10t0427600-01;Name=Os10t0427600-01;Locus_id=Os10g0427600;Oryzabase Gene Symbol Synonym(s)=OsMB23%2C MB23;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 23%2C MDC protein with a BTB domain 23%2C MDC protein having BTB domain 23;Note=Conserved hypothetical protein.;Transcript_evidence=AK109862 (DDBJ%2C Best hit);ORF_evidence=A2Z7J6 (UniProt);NIAS_FLcDNA=002-148-H06;Oryzabase=21217;TENOR=Os10t0427600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	15213689	15214251	.	+	.	Parent=Os10t0427600-01
Chr10	irgsp1_rep	CDS	15214252	15214659	.	+	0	Parent=Os10t0427600-01
Chr10	irgsp1_rep	three_prime_UTR	15214660	15215127	.	+	.	Parent=Os10t0427600-01
Chr10	irgsp1_rep	mRNA	15218050	15220523	.	-	.	ID=Os10t0427700-01;Name=Os10t0427700-01;Locus_id=Os10g0427700;Note=Hypothetical protein.;Transcript_evidence=AK107069 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-121-E09;Expression=AK107069;TENOR=Os10t0427700-01;KEGG=Os10t0427700-01
Chr10	irgsp1_rep	five_prime_UTR	15219084	15220523	.	-	.	Parent=Os10t0427700-01
Chr10	irgsp1_rep	CDS	15218505	15219083	.	-	0	Parent=Os10t0427700-01
Chr10	irgsp1_rep	three_prime_UTR	15218050	15218504	.	-	.	Parent=Os10t0427700-01
Chr10	irgsp1_rep	mRNA	15220811	15223120	.	-	.	ID=Os10t0427900-01;Name=Os10t0427900-01;Locus_id=Os10g0427900;Note=Conserved hypothetical protein.;Transcript_evidence=AK065574 (DDBJ%2C Best hit);ORF_evidence=NP_001059479.2 (RefSeq);NIAS_FLcDNA=J013027G06;Expression=AK065574;TENOR=Os10t0427900-01;KEGG=Os10t0427900-01
Chr10	irgsp1_rep	five_prime_UTR	15223100	15223120	.	-	.	Parent=Os10t0427900-01
Chr10	irgsp1_rep	CDS	15222752	15223099	.	-	0	Parent=Os10t0427900-01
Chr10	irgsp1_rep	three_prime_UTR	15222170	15222751	.	-	.	Parent=Os10t0427900-01
Chr10	irgsp1_rep	three_prime_UTR	15220811	15222016	.	-	.	Parent=Os10t0427900-01
Chr10	irgsp1_rep	mRNA	15220656	15222376	.	-	.	ID=Os10t0427900-02;Name=Os10t0427900-02;Locus_id=Os10g0427900;Note=Hypothetical conserved gene.;Transcript_evidence=AK060296 (DDBJ%2C Best hit);ORF_evidence=B9FWW1 (UniProt);NIAS_FLcDNA=001-006-E06;Expression=AK060296;TENOR=Os10t0427900-02;KEGG=Os10t0427900-02
Chr10	irgsp1_rep	five_prime_UTR	15222362	15222376	.	-	.	Parent=Os10t0427900-02
Chr10	irgsp1_rep	CDS	15222233	15222361	.	-	0	Parent=Os10t0427900-02
Chr10	irgsp1_rep	three_prime_UTR	15220656	15222232	.	-	.	Parent=Os10t0427900-02
Chr10	irgsp1_rep	mRNA	15229583	15234593	.	-	.	ID=Os10t0428200-01;Name=Os10t0428200-01;Locus_id=Os10g0428200;Note=Similar to BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1.;Transcript_evidence=AK103842 (DDBJ%2C Best hit);ORF_evidence=B6SW87 (UniProt);InterPro=Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J033148J07;TENOR=Os10t0428200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	15234530	15234593	.	-	.	Parent=Os10t0428200-01
Chr10	irgsp1_rep	five_prime_UTR	15233882	15233893	.	-	.	Parent=Os10t0428200-01
Chr10	irgsp1_rep	five_prime_UTR	15233053	15233195	.	-	.	Parent=Os10t0428200-01
Chr10	irgsp1_rep	CDS	15232959	15233052	.	-	0	Parent=Os10t0428200-01
Chr10	irgsp1_rep	CDS	15232726	15232865	.	-	2	Parent=Os10t0428200-01
Chr10	irgsp1_rep	three_prime_UTR	15232560	15232725	.	-	.	Parent=Os10t0428200-01
Chr10	irgsp1_rep	three_prime_UTR	15230450	15232449	.	-	.	Parent=Os10t0428200-01
Chr10	irgsp1_rep	three_prime_UTR	15230192	15230320	.	-	.	Parent=Os10t0428200-01
Chr10	irgsp1_rep	three_prime_UTR	15229583	15229765	.	-	.	Parent=Os10t0428200-01
Chr10	irgsp1_rep	mRNA	15229455	15234593	.	-	.	ID=Os10t0428200-02;Name=Os10t0428200-02;Locus_id=Os10g0428200;Note=Conserved hypothetical protein.;Transcript_evidence=AK065193 (DDBJ%2C Best hit);ORF_evidence=NP_001048318.1 (RefSeq);NIAS_FLcDNA=J013002E12;TENOR=Os10t0428200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	15234242	15234593	.	-	.	Parent=Os10t0428200-02
Chr10	irgsp1_rep	five_prime_UTR	15233882	15234148	.	-	.	Parent=Os10t0428200-02
Chr10	irgsp1_rep	five_prime_UTR	15232959	15233195	.	-	.	Parent=Os10t0428200-02
Chr10	irgsp1_rep	five_prime_UTR	15232730	15232865	.	-	.	Parent=Os10t0428200-02
Chr10	irgsp1_rep	five_prime_UTR	15232560	15232599	.	-	.	Parent=Os10t0428200-02
Chr10	irgsp1_rep	five_prime_UTR	15230671	15232449	.	-	.	Parent=Os10t0428200-02
Chr10	irgsp1_rep	CDS	15230450	15230670	.	-	0	Parent=Os10t0428200-02
Chr10	irgsp1_rep	CDS	15230192	15230320	.	-	1	Parent=Os10t0428200-02
Chr10	irgsp1_rep	CDS	15229687	15229765	.	-	1	Parent=Os10t0428200-02
Chr10	irgsp1_rep	three_prime_UTR	15229455	15229686	.	-	.	Parent=Os10t0428200-02
Chr10	irgsp1_rep	mRNA	15245010	15246475	.	+	.	ID=Os10t0428500-01;Name=Os10t0428500-01;Locus_id=Os10g0428500;Oryzabase Gene Symbol Synonym(s)=OsMB22%2C MB22;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 22%2C MDC protein with a BTB domain 22%2C MDC protein having BTB domain 22;Note=Conserved hypothetical protein.;Transcript_evidence=AK100213 (DDBJ%2C Best hit);ORF_evidence=A2Z7J6 (UniProt);NIAS_FLcDNA=J023044C16;Oryzabase=21216;TENOR=Os10t0428500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	15245010	15245512	.	+	.	Parent=Os10t0428500-01
Chr10	irgsp1_rep	CDS	15245513	15245821	.	+	0	Parent=Os10t0428500-01
Chr10	irgsp1_rep	three_prime_UTR	15245822	15246475	.	+	.	Parent=Os10t0428500-01
Chr10	irgsp1_rep	mRNA	15255885	15261528	.	+	.	ID=Os10t0428900-00;Name=Os10t0428900-00;Locus_id=Os10g0428900;Oryzabase Gene Symbol Synonym(s)=OsMB27%2C MB27;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 27%2C MDC protein with a BTB domain 27%2C MDC protein having BTB domain 27;Note=Similar to BTB/POZ domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XEB6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=MATH (IPR002083),TRAF-like (IPR008974),TRAF-type (IPR013322);Oryzabase=21221;TENOR=Os10t0428900-00
Chr10	irgsp1_rep	CDS	15255885	15256516	.	+	0	Parent=Os10t0428900-00
Chr10	irgsp1_rep	CDS	15261255	15261528	.	+	1	Parent=Os10t0428900-00
Chr10	irgsp1_rep	mRNA	15266567	15267731	.	-	.	ID=Os10t0429200-00;Name=Os10t0429200-00;Locus_id=Os10g0429200;Note=BTB/POZ fold domain containing protein.;Transcript_evidence=AK248323 (DDBJ);ORF_evidence=Q7XEA8 (UniProt);InterPro=BTB/POZ fold (IPR011333);TENOR=Os10t0429200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	15267038	15267731	.	-	.	Parent=Os10t0429200-00
Chr10	irgsp1_rep	CDS	15266567	15267037	.	-	0	Parent=Os10t0429200-00
Chr10	irgsp1_rep	mRNA	15268589	15269703	.	+	.	ID=Os10t0429300-00;Name=Os10t0429300-00;Locus_id=Os10g0429300;Oryzabase Gene Symbol Synonym(s)=OsMB30%2C MB30;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 30%2C MDC protein with a BTB domain 30%2C MDC protein having BTB domain 30;Note=Kelch related domain containing protein.;Transcript_evidence=tplb0003h03 (Wheat FLcDNA);ORF_evidence=Q7XEA7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);Oryzabase=21224;TENOR=Os10t0429300-00;KEGG=Os10t0429300-00
Chr10	irgsp1_rep	five_prime_UTR	15268589	15268590	.	+	.	Parent=Os10t0429300-00
Chr10	irgsp1_rep	CDS	15268591	15269703	.	+	0	Parent=Os10t0429300-00
Chr10	irgsp1_rep	mRNA	15279959	15281164	.	-	.	ID=Os10t0429600-00;Name=Os10t0429600-00;Locus_id=Os10g0429600;Oryzabase Gene Symbol Synonym(s)=OsMB42%2C MB42;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 42%2C MDC protein with a BTB domain 42%2C MDC protein having BTB domain 42;Note=Similar to BTB/POZ domain containing protein.;Transcript_evidence=AK369602 (DDBJ);ORF_evidence=Q7XEA4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);Oryzabase=21236;TENOR=Os10t0429600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	15279959	15281164	.	-	0	Parent=Os10t0429600-00
Chr10	irgsp1_rep	mRNA	15287363	15288094	.	+	.	ID=Os10t0429651-00;Name=Os10t0429651-00;Locus_id=Os10g0429651;Note=Hypothetical conserved gene.;Transcript_evidence=AK248323 (DDBJ);ORF_evidence=Q7XEA4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069);TENOR=Os10t0429651-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	15287363	15287902	.	+	0	Parent=Os10t0429651-00
Chr10	irgsp1_rep	three_prime_UTR	15287903	15288094	.	+	.	Parent=Os10t0429651-00
Chr10	irgsp1_rep	mRNA	15303901	15309302	.	-	.	ID=Os10t0430200-01;Name=Os10t0430200-01;Locus_id=Os10g0430200;CGSNL Gene Symbol=CAD3;CGSNL Gene Name=CINNAMYL ALCOHOL DEHYDROGENASE 3;Oryzabase Gene Symbol Synonym(s)=OsCAD3;Oryzabase Gene Name Synonym(s)=Cinnamyl alcohol dehydrogenase 3;Note=Similar to Sinapyl alcohol dehydrogenase.;Transcript_evidence=AK069040 (DDBJ%2C Best hit);ORF_evidence=Q8S411 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),Alcohol dehydrogenase%2C zinc-type%2C conserved site (IPR002328),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023003B20;Oryzabase=10432;Expression=AK069040;TENOR=Os10t0430200-01;KEGG=Os10t0430200-01
Chr10	irgsp1_rep	five_prime_UTR	15309103	15309302	.	-	.	Parent=Os10t0430200-01
Chr10	irgsp1_rep	CDS	15308996	15309102	.	-	0	Parent=Os10t0430200-01
Chr10	irgsp1_rep	CDS	15305402	15305515	.	-	1	Parent=Os10t0430200-01
Chr10	irgsp1_rep	CDS	15304460	15305127	.	-	1	Parent=Os10t0430200-01
Chr10	irgsp1_rep	CDS	15304164	15304375	.	-	2	Parent=Os10t0430200-01
Chr10	irgsp1_rep	three_prime_UTR	15303901	15304163	.	-	.	Parent=Os10t0430200-01
Chr10	irgsp1_rep	mRNA	15303964	15309211	.	-	.	ID=Os10t0430200-02;Name=Os10t0430200-02;Locus_id=Os10g0430200;CGSNL Gene Symbol=CAD3;CGSNL Gene Name=CINNAMYL ALCOHOL DEHYDROGENASE 3;Oryzabase Gene Symbol Synonym(s)=OsCAD3;Oryzabase Gene Name Synonym(s)=Cinnamyl alcohol dehydrogenase 3;Note=Similar to Sinapyl alcohol dehydrogenase.;Transcript_evidence=AK104047 (DDBJ%2C Best hit);ORF_evidence=Q8S411 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),Alcohol dehydrogenase%2C zinc-type%2C conserved site (IPR002328),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-022-H02;Oryzabase=10432;Expression=AK104047;TENOR=Os10t0430200-02;KEGG=Os10t0430200-02
Chr10	irgsp1_rep	five_prime_UTR	15309103	15309211	.	-	.	Parent=Os10t0430200-02
Chr10	irgsp1_rep	CDS	15308996	15309102	.	-	0	Parent=Os10t0430200-02
Chr10	irgsp1_rep	CDS	15305402	15305515	.	-	1	Parent=Os10t0430200-02
Chr10	irgsp1_rep	CDS	15304460	15305127	.	-	1	Parent=Os10t0430200-02
Chr10	irgsp1_rep	CDS	15304164	15304375	.	-	2	Parent=Os10t0430200-02
Chr10	irgsp1_rep	three_prime_UTR	15303964	15304163	.	-	.	Parent=Os10t0430200-02
Chr10	irgsp1_rep	mRNA	15303951	15309180	.	-	.	ID=Os10t0430200-03;Name=Os10t0430200-03;Locus_id=Os10g0430200;CGSNL Gene Symbol=CAD3;CGSNL Gene Name=CINNAMYL ALCOHOL DEHYDROGENASE 3;Oryzabase Gene Symbol Synonym(s)=OsCAD3;Oryzabase Gene Name Synonym(s)=Cinnamyl alcohol dehydrogenase 3;Note=Similar to Sinapyl alcohol dehydrogenase.;Transcript_evidence=AK099176 (DDBJ%2C Best hit);ORF_evidence=Q8S411 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),Alcohol dehydrogenase%2C zinc-type%2C conserved site (IPR002328),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023090E20;Oryzabase=10432;TENOR=Os10t0430200-03
Chr10	irgsp1_rep	five_prime_UTR	15309103	15309180	.	-	.	Parent=Os10t0430200-03
Chr10	irgsp1_rep	CDS	15308996	15309102	.	-	0	Parent=Os10t0430200-03
Chr10	irgsp1_rep	CDS	15305402	15305515	.	-	1	Parent=Os10t0430200-03
Chr10	irgsp1_rep	CDS	15304460	15305127	.	-	1	Parent=Os10t0430200-03
Chr10	irgsp1_rep	CDS	15304164	15304375	.	-	2	Parent=Os10t0430200-03
Chr10	irgsp1_rep	three_prime_UTR	15303951	15304163	.	-	.	Parent=Os10t0430200-03
Chr10	irgsp1_rep	mRNA	15326689	15330337	.	+	.	ID=Os10t0430600-01;Name=Os10t0430600-01;Locus_id=Os10g0430600;Oryzabase Gene Symbol Synonym(s)=OsMB46%2C MB46;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 46%2C MDC protein with a BTB domain 46%2C MDC protein having BTB domain 46;Note=Aminotransferase%2C class-II%2C pyridoxal-phosphate binding site domain containing protein.;Transcript_evidence=AK069549 (DDBJ%2C Best hit);ORF_evidence=B8BGZ5 (UniProt);NIAS_FLcDNA=J023024I10;Oryzabase=21240;Expression=AK069549;TENOR=Os10t0430600-01;KEGG=Os10t0430600-01
Chr10	irgsp1_rep	five_prime_UTR	15326689	15326757	.	+	.	Parent=Os10t0430600-01
Chr10	irgsp1_rep	CDS	15326758	15326799	.	+	0	Parent=Os10t0430600-01
Chr10	irgsp1_rep	CDS	15326915	15326962	.	+	0	Parent=Os10t0430600-01
Chr10	irgsp1_rep	CDS	15327056	15327176	.	+	0	Parent=Os10t0430600-01
Chr10	irgsp1_rep	CDS	15328243	15328299	.	+	2	Parent=Os10t0430600-01
Chr10	irgsp1_rep	CDS	15329279	15329387	.	+	2	Parent=Os10t0430600-01
Chr10	irgsp1_rep	CDS	15329468	15329693	.	+	1	Parent=Os10t0430600-01
Chr10	irgsp1_rep	CDS	15329778	15329960	.	+	0	Parent=Os10t0430600-01
Chr10	irgsp1_rep	three_prime_UTR	15329961	15330337	.	+	.	Parent=Os10t0430600-01
Chr10	irgsp1_rep	mRNA	15330610	15336096	.	+	.	ID=Os10t0430700-01;Name=Os10t0430700-01;Locus_id=Os10g0430700;Note=Conserved hypothetical protein.;Transcript_evidence=AK072713 (DDBJ%2C Best hit);ORF_evidence=B8BGZ5 (UniProt);NIAS_FLcDNA=J023139G03;TENOR=Os10t0430700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	15330610	15330610	.	+	.	Parent=Os10t0430700-01
Chr10	irgsp1_rep	CDS	15330611	15330745	.	+	0	Parent=Os10t0430700-01
Chr10	irgsp1_rep	CDS	15330868	15330912	.	+	0	Parent=Os10t0430700-01
Chr10	irgsp1_rep	CDS	15331042	15331159	.	+	0	Parent=Os10t0430700-01
Chr10	irgsp1_rep	CDS	15334048	15334104	.	+	2	Parent=Os10t0430700-01
Chr10	irgsp1_rep	CDS	15335118	15335226	.	+	2	Parent=Os10t0430700-01
Chr10	irgsp1_rep	CDS	15335307	15335532	.	+	1	Parent=Os10t0430700-01
Chr10	irgsp1_rep	CDS	15335691	15335885	.	+	0	Parent=Os10t0430700-01
Chr10	irgsp1_rep	three_prime_UTR	15335886	15336096	.	+	.	Parent=Os10t0430700-01
Chr10	irgsp1_rep	mRNA	15331798	15332474	.	-	.	ID=Os10t0430750-00;Name=Os10t0430750-00;Locus_id=Os10g0430750;Note=Hypothetical conserved gene.;Transcript_evidence=AK062794 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;Expression=AK062794;TENOR=Os10t0430750-00;KEGG=Os10t0430750-00
Chr10	irgsp1_rep	five_prime_UTR	15332424	15332474	.	-	.	Parent=Os10t0430750-00
Chr10	irgsp1_rep	CDS	15331902	15332423	.	-	0	Parent=Os10t0430750-00
Chr10	irgsp1_rep	three_prime_UTR	15331798	15331901	.	-	.	Parent=Os10t0430750-00
Chr10	irgsp1_rep	mRNA	15338211	15341263	.	+	.	ID=Os10t0430800-01;Name=Os10t0430800-01;Locus_id=Os10g0430800;Note=Hypothetical conserved gene.;Transcript_evidence=AK072819 (DDBJ%2C Best hit);ORF_evidence=A3C4Z6 (UniProt);NIAS_FLcDNA=J023141F19;Expression=AK072819;TENOR=Os10t0430800-01;KEGG=Os10t0430800-01
Chr10	irgsp1_rep	CDS	15338211	15338348	.	+	0	Parent=Os10t0430800-01
Chr10	irgsp1_rep	CDS	15338444	15338488	.	+	0	Parent=Os10t0430800-01
Chr10	irgsp1_rep	CDS	15338589	15338706	.	+	0	Parent=Os10t0430800-01
Chr10	irgsp1_rep	CDS	15339692	15339751	.	+	2	Parent=Os10t0430800-01
Chr10	irgsp1_rep	CDS	15339953	15340061	.	+	2	Parent=Os10t0430800-01
Chr10	irgsp1_rep	CDS	15340142	15340367	.	+	1	Parent=Os10t0430800-01
Chr10	irgsp1_rep	CDS	15340444	15340626	.	+	0	Parent=Os10t0430800-01
Chr10	irgsp1_rep	three_prime_UTR	15340627	15341263	.	+	.	Parent=Os10t0430800-01
Chr10	irgsp1_rep	mRNA	15338228	15338928	.	+	.	ID=Os10t0430800-02;Name=Os10t0430800-02;Locus_id=Os10g0430800;Note=Conserved hypothetical protein.;Transcript_evidence=AK111261 (DDBJ%2C Best hit);ORF_evidence=A3C4Z6 (UniProt);NIAS_FLcDNA=002-180-F01;TENOR=Os10t0430800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	15338228	15338228	.	+	.	Parent=Os10t0430800-02
Chr10	irgsp1_rep	CDS	15338229	15338348	.	+	0	Parent=Os10t0430800-02
Chr10	irgsp1_rep	CDS	15338444	15338488	.	+	0	Parent=Os10t0430800-02
Chr10	irgsp1_rep	CDS	15338589	15338729	.	+	0	Parent=Os10t0430800-02
Chr10	irgsp1_rep	three_prime_UTR	15338730	15338928	.	+	.	Parent=Os10t0430800-02
Chr10	irgsp1_rep	mRNA	15341888	15350754	.	-	.	ID=Os10t0430900-01;Name=Os10t0430900-01;Locus_id=Os10g0430900;Note=Tyrosine protein kinase domain containing protein.;Transcript_evidence=AK121718 (DDBJ%2C Best hit);ORF_evidence=Q5XPL8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J033079M14;Expression=AK121718;TENOR=Os10t0430900-01;KEGG=Os10t0430900-01
Chr10	irgsp1_rep	five_prime_UTR	15350662	15350754	.	-	.	Parent=Os10t0430900-01
Chr10	irgsp1_rep	CDS	15350278	15350661	.	-	0	Parent=Os10t0430900-01
Chr10	irgsp1_rep	CDS	15347757	15348173	.	-	0	Parent=Os10t0430900-01
Chr10	irgsp1_rep	CDS	15346844	15346947	.	-	0	Parent=Os10t0430900-01
Chr10	irgsp1_rep	CDS	15345483	15346681	.	-	1	Parent=Os10t0430900-01
Chr10	irgsp1_rep	CDS	15345189	15345229	.	-	2	Parent=Os10t0430900-01
Chr10	irgsp1_rep	CDS	15344964	15345032	.	-	0	Parent=Os10t0430900-01
Chr10	irgsp1_rep	CDS	15344757	15344857	.	-	0	Parent=Os10t0430900-01
Chr10	irgsp1_rep	CDS	15344318	15344396	.	-	1	Parent=Os10t0430900-01
Chr10	irgsp1_rep	CDS	15344146	15344244	.	-	0	Parent=Os10t0430900-01
Chr10	irgsp1_rep	CDS	15344011	15344079	.	-	0	Parent=Os10t0430900-01
Chr10	irgsp1_rep	CDS	15343860	15343909	.	-	0	Parent=Os10t0430900-01
Chr10	irgsp1_rep	CDS	15342541	15342717	.	-	1	Parent=Os10t0430900-01
Chr10	irgsp1_rep	CDS	15342267	15342396	.	-	1	Parent=Os10t0430900-01
Chr10	irgsp1_rep	three_prime_UTR	15341888	15342266	.	-	.	Parent=Os10t0430900-01
Chr10	irgsp1_rep	mRNA	15360545	15361737	.	+	.	ID=Os10t0431000-01;Name=Os10t0431000-01;Locus_id=Os10g0431000;CGSNL Gene Symbol=PQT3;CGSNL Gene Name=PARAQUAT TOLERANCE 3;Oryzabase Gene Symbol Synonym(s)=OsPQT3;Note=Similar to predicted protein.;Transcript_evidence=AK099410 (DDBJ%2C Best hit);ORF_evidence=NP_199554.2 (RefSeq);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: zinc ion binding (GO:0008270);InterPro=DWNN domain (IPR014891);NIAS_FLcDNA=J013003L06;Oryzabase=23735;Expression=AK099410;TENOR=Os10t0431000-01;KEGG=Os10t0431000-01
Chr10	irgsp1_rep	five_prime_UTR	15360545	15360685	.	+	.	Parent=Os10t0431000-01
Chr10	irgsp1_rep	five_prime_UTR	15360837	15361328	.	+	.	Parent=Os10t0431000-01
Chr10	irgsp1_rep	CDS	15361329	15361544	.	+	0	Parent=Os10t0431000-01
Chr10	irgsp1_rep	three_prime_UTR	15361545	15361737	.	+	.	Parent=Os10t0431000-01
Chr10	irgsp1_rep	mRNA	15360564	15369094	.	+	.	ID=Os10t0431000-03;Name=Os10t0431000-03;Locus_id=Os10g0431000;RAP-DB Gene Symbol Synonym(s)=OsPQT3;RAP-DB Gene Name Synonym(s)=PARAQUAT TOLERANCE 3;CGSNL Gene Symbol=PQT3;CGSNL Gene Name=PARAQUAT TOLERANCE 3;Oryzabase Gene Symbol Synonym(s)=OsPQT3;Note=Rice homolog of Arabidopsis PQT3 encoding an E3 ubiquitin ligase%2C Negative regulation of abiotic (oxidative and salt) stress resistance;Transcript_evidence=AK106568 (truncated),Inferred from literature;ORF_evidence=Q337X8;GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type superfamily (IPR036875),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),DWNN domain (IPR014891),Zinc knuckle CX2CX3GHX4C (IPR025829);NIAS_FLcDNA=002-110-H07 (truncated);Manual Curation=July 22%2C 2020;Literature_PMID=32691446;Oryzabase=23735;TENOR=Os10t0431000-03;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	15360564	15361328	.	+	.	Parent=Os10t0431000-03
Chr10	irgsp1_rep	CDS	15361329	15361494	.	+	0	Parent=Os10t0431000-03
Chr10	irgsp1_rep	CDS	15362168	15362267	.	+	2	Parent=Os10t0431000-03
Chr10	irgsp1_rep	CDS	15362476	15362554	.	+	1	Parent=Os10t0431000-03
Chr10	irgsp1_rep	CDS	15362697	15362857	.	+	0	Parent=Os10t0431000-03
Chr10	irgsp1_rep	CDS	15362999	15363078	.	+	1	Parent=Os10t0431000-03
Chr10	irgsp1_rep	CDS	15363346	15363411	.	+	2	Parent=Os10t0431000-03
Chr10	irgsp1_rep	CDS	15363489	15363645	.	+	2	Parent=Os10t0431000-03
Chr10	irgsp1_rep	CDS	15363745	15363893	.	+	1	Parent=Os10t0431000-03
Chr10	irgsp1_rep	CDS	15364079	15364246	.	+	2	Parent=Os10t0431000-03
Chr10	irgsp1_rep	CDS	15364596	15364889	.	+	2	Parent=Os10t0431000-03
Chr10	irgsp1_rep	CDS	15365172	15365216	.	+	2	Parent=Os10t0431000-03
Chr10	irgsp1_rep	CDS	15365383	15365632	.	+	2	Parent=Os10t0431000-03
Chr10	irgsp1_rep	CDS	15365877	15366005	.	+	1	Parent=Os10t0431000-03
Chr10	irgsp1_rep	CDS	15366969	15367209	.	+	1	Parent=Os10t0431000-03
Chr10	irgsp1_rep	CDS	15368147	15368812	.	+	0	Parent=Os10t0431000-03
Chr10	irgsp1_rep	three_prime_UTR	15368813	15369094	.	+	.	Parent=Os10t0431000-03
Chr10	irgsp1_rep	mRNA	15360654	15361100	.	-	.	ID=Os10t0431100-00;Name=Os10t0431100-00;Locus_id=Os10g0431100;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os10t0431100-00;KEGG=Os10t0431100-00
Chr10	irgsp1_rep	CDS	15360654	15361100	.	-	0	Parent=Os10t0431100-00
Chr10	irgsp1_rep	mRNA	15392014	15392984	.	+	.	ID=Os10t0431700-00;Name=Os10t0431700-00;Locus_id=Os10g0431700;Oryzabase Gene Symbol Synonym(s)=OsOFP31%2C OsOFP26%2C OsSTA245;Oryzabase Gene Name Synonym(s)=OVATE family protein 31%2C ovate family protein 26%2C OVATE-domain containing protein 26;Note=Hypothetical conserved gene.;Transcript_evidence=EU971125 (DDBJ);ORF_evidence=Q7XE88 (UniProt);InterPro=Domain of unknown function DUF623 (IPR006458);Oryzabase=18327;TENOR=Os10t0431700-00;KEGG=Os10t0431700-00
Chr10	irgsp1_rep	CDS	15392014	15392805	.	+	0	Parent=Os10t0431700-00
Chr10	irgsp1_rep	three_prime_UTR	15392806	15392984	.	+	.	Parent=Os10t0431700-00
Chr10	irgsp1_rep	mRNA	15402601	15405799	.	-	.	ID=Os10t0431900-01;Name=Os10t0431900-01;Locus_id=Os10g0431900;CGSNL Gene Symbol=RLCK300;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 300;Oryzabase Gene Symbol Synonym(s)=OsRLCK300%2C PTK18%2C OsPTK18;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 300%2C Protein Tyrosine Kinase 18;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK106265 (DDBJ%2C Best hit);ORF_evidence=C6ZRP4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=002-100-F12;Oryzabase=18976;TENOR=Os10t0431900-01
Chr10	irgsp1_rep	five_prime_UTR	15405561	15405799	.	-	.	Parent=Os10t0431900-01
Chr10	irgsp1_rep	CDS	15405497	15405560	.	-	0	Parent=Os10t0431900-01
Chr10	irgsp1_rep	CDS	15404714	15405033	.	-	2	Parent=Os10t0431900-01
Chr10	irgsp1_rep	CDS	15404504	15404639	.	-	0	Parent=Os10t0431900-01
Chr10	irgsp1_rep	CDS	15404125	15404261	.	-	2	Parent=Os10t0431900-01
Chr10	irgsp1_rep	CDS	15402792	15403277	.	-	0	Parent=Os10t0431900-01
Chr10	irgsp1_rep	three_prime_UTR	15402601	15402791	.	-	.	Parent=Os10t0431900-01
Chr10	irgsp1_rep	mRNA	15402610	15405761	.	-	.	ID=Os10t0431900-02;Name=Os10t0431900-02;Locus_id=Os10g0431900;CGSNL Gene Symbol=RLCK300;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 300;Oryzabase Gene Symbol Synonym(s)=OsRLCK300%2C PTK18%2C OsPTK18;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 300%2C Protein Tyrosine Kinase 18;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK072305 (DDBJ%2C Best hit);ORF_evidence=C6ZRP4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J023019A13;Oryzabase=18976;TENOR=Os10t0431900-02
Chr10	irgsp1_rep	five_prime_UTR	15405561	15405761	.	-	.	Parent=Os10t0431900-02
Chr10	irgsp1_rep	CDS	15405497	15405560	.	-	0	Parent=Os10t0431900-02
Chr10	irgsp1_rep	CDS	15404714	15405033	.	-	2	Parent=Os10t0431900-02
Chr10	irgsp1_rep	CDS	15404504	15404639	.	-	0	Parent=Os10t0431900-02
Chr10	irgsp1_rep	CDS	15404125	15404261	.	-	2	Parent=Os10t0431900-02
Chr10	irgsp1_rep	CDS	15402792	15403277	.	-	0	Parent=Os10t0431900-02
Chr10	irgsp1_rep	three_prime_UTR	15402610	15402791	.	-	.	Parent=Os10t0431900-02
Chr10	irgsp1_rep	mRNA	15402797	15403280	.	+	.	ID=Os10t0432001-00;Name=Os10t0432001-00;Locus_id=Os10g0432001;Note=Hypothetical gene.;Transcript_evidence=EU943065 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0432001-00;KEGG=Os10t0432001-00
Chr10	irgsp1_rep	five_prime_UTR	15402797	15402797	.	+	.	Parent=Os10t0432001-00
Chr10	irgsp1_rep	CDS	15402798	15403280	.	+	0	Parent=Os10t0432001-00
Chr10	irgsp1_rep	mRNA	15418591	15423464	.	+	.	ID=Os10t0432200-01;Name=Os10t0432200-01;Locus_id=Os10g0432200;Note=Conserved hypothetical protein.;Transcript_evidence=AK106572 (DDBJ%2C Best hit);ORF_evidence=Q337X2 (UniProt);NIAS_FLcDNA=002-111-A11;TENOR=Os10t0432200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	15418591	15418592	.	+	.	Parent=Os10t0432200-01
Chr10	irgsp1_rep	CDS	15418593	15419426	.	+	0	Parent=Os10t0432200-01
Chr10	irgsp1_rep	three_prime_UTR	15419427	15419682	.	+	.	Parent=Os10t0432200-01
Chr10	irgsp1_rep	three_prime_UTR	15419885	15420195	.	+	.	Parent=Os10t0432200-01
Chr10	irgsp1_rep	three_prime_UTR	15420293	15420488	.	+	.	Parent=Os10t0432200-01
Chr10	irgsp1_rep	three_prime_UTR	15420574	15420753	.	+	.	Parent=Os10t0432200-01
Chr10	irgsp1_rep	three_prime_UTR	15421336	15421605	.	+	.	Parent=Os10t0432200-01
Chr10	irgsp1_rep	three_prime_UTR	15421910	15422155	.	+	.	Parent=Os10t0432200-01
Chr10	irgsp1_rep	three_prime_UTR	15422314	15422747	.	+	.	Parent=Os10t0432200-01
Chr10	irgsp1_rep	three_prime_UTR	15422848	15422940	.	+	.	Parent=Os10t0432200-01
Chr10	irgsp1_rep	three_prime_UTR	15423029	15423464	.	+	.	Parent=Os10t0432200-01
Chr10	irgsp1_rep	mRNA	15424832	15427433	.	-	.	ID=Os10t0432300-01;Name=Os10t0432300-01;Locus_id=Os10g0432300;RAP-DB Gene Symbol Synonym(s)=OsTBP2.2;RAP-DB Gene Name Synonym(s)=TATA-box binding protein 2.2;Note=TATA-box binding protein%2C Transcription factor IID (TFIID) family protein%2C Drought stress response and tolerance;Transcript_evidence=AK108240;ORF_evidence=Q337X1;GO=Biological Process: DNA-templated transcription%2C initiation (GO:0006352),Molecular Function: DNA binding (GO:0003677);InterPro=TBP domain superfamily (IPR012295),TATA-box binding protein (IPR000814),TATA-box binding protein%2C eukaryotic (IPR033710),TATA-box binding protein%2C conserved site (IPR030491);NIAS_FLcDNA=002-140-G12;Manual Curation=June 12%2C 2020;Literature_PMID=32521717;Expression=AK108240;TENOR=Os10t0432300-01;KEGG=Os10t0432300-01;Subcellular location=nucleus (GO:0005634)
Chr10	irgsp1_rep	five_prime_UTR	15427289	15427433	.	-	.	Parent=Os10t0432300-01
Chr10	irgsp1_rep	CDS	15427146	15427288	.	-	0	Parent=Os10t0432300-01
Chr10	irgsp1_rep	CDS	15426260	15426347	.	-	1	Parent=Os10t0432300-01
Chr10	irgsp1_rep	CDS	15426001	15426123	.	-	0	Parent=Os10t0432300-01
Chr10	irgsp1_rep	CDS	15425804	15425848	.	-	0	Parent=Os10t0432300-01
Chr10	irgsp1_rep	CDS	15425628	15425720	.	-	0	Parent=Os10t0432300-01
Chr10	irgsp1_rep	CDS	15425293	15425471	.	-	0	Parent=Os10t0432300-01
Chr10	irgsp1_rep	CDS	15425201	15425201	.	-	1	Parent=Os10t0432300-01
Chr10	irgsp1_rep	three_prime_UTR	15424832	15425200	.	-	.	Parent=Os10t0432300-01
Chr10	irgsp1_rep	mRNA	15426847	15427433	.	-	.	ID=Os10t0432300-02;Name=Os10t0432300-02;Locus_id=Os10g0432300;CGSNL Gene Symbol=TBP2.2;CGSNL Gene Name=TATA-BOX BINDING PROTEIN 2.2;Oryzabase Gene Symbol Synonym(s)=OsTBP2.2;Oryzabase Gene Name Synonym(s)=TATA-box binding protein 2.2;Note=Non-protein coding transcript.;Transcript_evidence=AK111369 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-182-A03;Oryzabase=23710;TENOR=Os10t0432300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	exon	15426847	15427433	.	-	.	Parent=Os10t0432300-02
Chr10	irgsp1_rep	mRNA	15428319	15431629	.	-	.	ID=Os10t0432400-01;Name=Os10t0432400-01;Locus_id=Os10g0432400;Note=Hypothetical protein.;Transcript_evidence=AK070735 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023059H15;Expression=AK070735;TENOR=Os10t0432400-01;KEGG=Os10t0432400-01
Chr10	irgsp1_rep	five_prime_UTR	15431533	15431629	.	-	.	Parent=Os10t0432400-01
Chr10	irgsp1_rep	CDS	15431170	15431532	.	-	0	Parent=Os10t0432400-01
Chr10	irgsp1_rep	three_prime_UTR	15430914	15431169	.	-	.	Parent=Os10t0432400-01
Chr10	irgsp1_rep	three_prime_UTR	15430669	15430776	.	-	.	Parent=Os10t0432400-01
Chr10	irgsp1_rep	three_prime_UTR	15430110	15430300	.	-	.	Parent=Os10t0432400-01
Chr10	irgsp1_rep	three_prime_UTR	15428319	15428552	.	-	.	Parent=Os10t0432400-01
Chr10	irgsp1_rep	mRNA	15436590	15437348	.	-	.	ID=Os10t0432650-00;Name=Os10t0432650-00;Locus_id=Os10g0432650;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os10t0432650-00;KEGG=Os10t0432650-00
Chr10	irgsp1_rep	CDS	15436590	15437348	.	-	0	Parent=Os10t0432650-00
Chr10	irgsp1_rep	mRNA	15437445	15437735	.	-	.	ID=Os10t0432725-00;Name=Os10t0432725-00;Locus_id=Os10g0432725;Note=Similar to cDNA%2C clone: J075155G16%2C full insert sequence.;Transcript_evidence=ab initio prediction;ORF_evidence=Q337W9 (UniProt);TENOR=Os10t0432725-00;KEGG=Os10t0432725-00
Chr10	irgsp1_rep	CDS	15437445	15437735	.	-	0	Parent=Os10t0432725-00
Chr10	irgsp1_rep	mRNA	15444512	15445767	.	+	.	ID=Os10t0433200-00;Name=Os10t0433200-00;Locus_id=Os10g0433200;Note=Hypothetical conserved gene.;Transcript_evidence=AK108113 (DDBJ%2C Secondary hit);ORF_evidence=B8AI43 (UniProt);Expression=AK108113;TENOR=Os10t0433200-00;KEGG=Os10t0433200-00
Chr10	irgsp1_rep	five_prime_UTR	15444512	15444513	.	+	.	Parent=Os10t0433200-00
Chr10	irgsp1_rep	CDS	15444514	15444797	.	+	0	Parent=Os10t0433200-00
Chr10	irgsp1_rep	CDS	15444895	15444907	.	+	1	Parent=Os10t0433200-00
Chr10	irgsp1_rep	three_prime_UTR	15444908	15445128	.	+	.	Parent=Os10t0433200-00
Chr10	irgsp1_rep	three_prime_UTR	15445253	15445767	.	+	.	Parent=Os10t0433200-00
Chr10	irgsp1_rep	mRNA	15452553	15455950	.	+	.	ID=Os10t0433700-01;Name=Os10t0433700-01;Locus_id=Os10g0433700;Note=Hypothetical protein.;Transcript_evidence=AK065401 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013009H13;Expression=AK065401;TENOR=Os10t0433700-01;KEGG=Os10t0433700-01
Chr10	irgsp1_rep	five_prime_UTR	15452553	15454166	.	+	.	Parent=Os10t0433700-01
Chr10	irgsp1_rep	five_prime_UTR	15454283	15454933	.	+	.	Parent=Os10t0433700-01
Chr10	irgsp1_rep	CDS	15454934	15455188	.	+	0	Parent=Os10t0433700-01
Chr10	irgsp1_rep	three_prime_UTR	15455189	15455950	.	+	.	Parent=Os10t0433700-01
Chr10	irgsp1_rep	mRNA	15462806	15463918	.	+	.	ID=Os10t0434000-00;Name=Os10t0434000-00;Locus_id=Os10g0434000;Oryzabase Gene Symbol Synonym(s)=OsMB38%2C MB38%2C DLN236%2C OsDLN236;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 38%2C MDC protein with a BTB domain 38%2C MDC protein having BTB domain 38%2C DLN repressor 236%2C DLN motif protein 236;Note=Similar to BTB/POZ domain containing protein.;Transcript_evidence=AK335712 (DDBJ);ORF_evidence=Q7XE80 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);Oryzabase=21232;TENOR=Os10t0434000-00
Chr10	irgsp1_rep	CDS	15462806	15463918	.	+	0	Parent=Os10t0434000-00
Chr10	irgsp1_rep	mRNA	15466956	15468056	.	-	.	ID=Os10t0434200-00;Name=Os10t0434200-00;Locus_id=Os10g0434200;Oryzabase Gene Symbol Synonym(s)=OsMB34%2C MB34;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 34%2C MDC protein with a BTB domain 34%2C MDC protein having BTB domain 34;Note=Similar to BTB/POZ domain containing protein.;Transcript_evidence=AK369602 (DDBJ);ORF_evidence=Q337W6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);Oryzabase=21228;TENOR=Os10t0434200-00
Chr10	irgsp1_rep	CDS	15466956	15468056	.	-	0	Parent=Os10t0434200-00
Chr10	irgsp1_rep	mRNA	15468394	15471167	.	+	.	ID=Os10t0434300-01;Name=Os10t0434300-01;Locus_id=Os10g0434300;Note=Similar to F-box domain containing protein.;Transcript_evidence=AK061311 (DDBJ%2C Best hit);ORF_evidence=Q2QMR1 (UniProt);NIAS_FLcDNA=006-302-B01;TENOR=Os10t0434300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	15468394	15469024	.	+	.	Parent=Os10t0434300-01
Chr10	irgsp1_rep	five_prime_UTR	15469508	15469510	.	+	.	Parent=Os10t0434300-01
Chr10	irgsp1_rep	CDS	15469511	15469615	.	+	0	Parent=Os10t0434300-01
Chr10	irgsp1_rep	three_prime_UTR	15469616	15469632	.	+	.	Parent=Os10t0434300-01
Chr10	irgsp1_rep	three_prime_UTR	15469761	15469812	.	+	.	Parent=Os10t0434300-01
Chr10	irgsp1_rep	three_prime_UTR	15470818	15471167	.	+	.	Parent=Os10t0434300-01
Chr10	irgsp1_rep	mRNA	15486180	15487367	.	+	.	ID=Os10t0434650-00;Name=Os10t0434650-00;Locus_id=Os10g0434650;Oryzabase Gene Symbol Synonym(s)=OsMB39%2C MB39;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 39%2C MDC protein with a BTB domain 39%2C MDC protein having BTB domain 39;Note=Similar to BTB/POZ domain containing protein.;Transcript_evidence=AK376276 (DDBJ);ORF_evidence=Q7XE76 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);Oryzabase=21233;TENOR=Os10t0434650-00
Chr10	irgsp1_rep	CDS	15486180	15487367	.	+	0	Parent=Os10t0434650-00
Chr10	irgsp1_rep	mRNA	15493843	15494095	.	+	.	ID=Os10t0434801-00;Name=Os10t0434801-00;Locus_id=Os10g0434801;Note=Hypothetical conserved gene.;Transcript_evidence=CT828210 (DDBJ%2C Best hit);ORF_evidence=NP_001059243.1 (RefSeq);TENOR=Os10t0434801-00;KEGG=Os10t0434801-00
Chr10	irgsp1_rep	five_prime_UTR	15493843	15493843	.	+	.	Parent=Os10t0434801-00
Chr10	irgsp1_rep	CDS	15493844	15493972	.	+	0	Parent=Os10t0434801-00
Chr10	irgsp1_rep	three_prime_UTR	15493973	15494095	.	+	.	Parent=Os10t0434801-00
Chr10	irgsp1_rep	mRNA	15495339	15497253	.	+	.	ID=Os10t0434900-00;Name=Os10t0434900-00;Locus_id=Os10g0434900;Note=Similar to Protein STAR1.;Transcript_evidence=FP100952 (DDBJ);ORF_evidence=Q0D9V6 (UniProt);GO=Biological Process: phosphate ion transmembrane transport (GO:0035435),Cellular Component: membrane (GO:0016020),Molecular Function: inorganic phosphate transmembrane transporter activity (GO:0005315);InterPro=Phosphate transport system permease protein 1 (IPR005670);TENOR=Os10t0434900-00
Chr10	irgsp1_rep	five_prime_UTR	15495339	15495471	.	+	.	Parent=Os10t0434900-00
Chr10	irgsp1_rep	five_prime_UTR	15495562	15495566	.	+	.	Parent=Os10t0434900-00
Chr10	irgsp1_rep	CDS	15495567	15495621	.	+	0	Parent=Os10t0434900-00
Chr10	irgsp1_rep	CDS	15496904	15497253	.	+	2	Parent=Os10t0434900-00
Chr10	irgsp1_rep	mRNA	15498122	15499315	.	-	.	ID=Os10t0434999-00;Name=Os10t0434999-00;Locus_id=Os10g0434999;Oryzabase Gene Symbol Synonym(s)=OsMB45%2C MB45;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 45%2C MDC protein with a BTB domain 45%2C MDC protein having BTB domain 45;Note=Similar to BTB/POZ domain containing protein.;Transcript_evidence=AK248323 (DDBJ);ORF_evidence=Q7XE75 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);Oryzabase=21239;TENOR=Os10t0434999-00
Chr10	irgsp1_rep	CDS	15498122	15499315	.	-	0	Parent=Os10t0434999-00
Chr10	irgsp1_rep	mRNA	15506653	15507311	.	+	.	ID=Os10t0435300-00;Name=Os10t0435300-00;Locus_id=Os10g0435300;Oryzabase Gene Symbol Synonym(s)=OsMB37%2C MB37;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 37%2C MDC protein with a BTB domain 37%2C MDC protein having BTB domain 37;Note=BTB/POZ-like domain containing protein.;Transcript_evidence=AK248323 (DDBJ);ORF_evidence=GeneMark;GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);Oryzabase=21231;TENOR=Os10t0435300-00
Chr10	irgsp1_rep	five_prime_UTR	15506653	15506847	.	+	.	Parent=Os10t0435300-00
Chr10	irgsp1_rep	CDS	15506848	15507311	.	+	0	Parent=Os10t0435300-00
Chr10	irgsp1_rep	mRNA	15514723	15519165	.	-	.	ID=Os10t0435400-01;Name=Os10t0435400-01;Locus_id=Os10g0435400;Oryzabase Gene Symbol Synonym(s)=OsMB44%2C MB44%2C DLN237%2C OsDLN237;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 44%2C MDC protein with a BTB domain 44%2C MDC protein having BTB domain 44%2C DLN repressor 237%2C DLN motif protein 237;Note=TRAF-type domain containing protein.;Transcript_evidence=AK106669 (DDBJ%2C Best hit);ORF_evidence=Q7XE80 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);NIAS_FLcDNA=002-113-H11;Oryzabase=21238;Expression=AK106669;TENOR=Os10t0435400-01;KEGG=Os10t0435400-01
Chr10	irgsp1_rep	five_prime_UTR	15517340	15519165	.	-	.	Parent=Os10t0435400-01
Chr10	irgsp1_rep	five_prime_UTR	15516959	15517039	.	-	.	Parent=Os10t0435400-01
Chr10	irgsp1_rep	five_prime_UTR	15516793	15516849	.	-	.	Parent=Os10t0435400-01
Chr10	irgsp1_rep	five_prime_UTR	15515888	15516273	.	-	.	Parent=Os10t0435400-01
Chr10	irgsp1_rep	CDS	15514820	15515887	.	-	0	Parent=Os10t0435400-01
Chr10	irgsp1_rep	three_prime_UTR	15514723	15514819	.	-	.	Parent=Os10t0435400-01
Chr10	irgsp1_rep	mRNA	15539245	15540386	.	-	.	ID=Os10t0435900-00;Name=Os10t0435900-00;Locus_id=Os10g0435900;Note=Similar to BTB/POZ domain containing protein.;Transcript_evidence=AK376687 (DDBJ);ORF_evidence=Q7XE66 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069);TENOR=Os10t0435900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	15540058	15540386	.	-	.	Parent=Os10t0435900-00
Chr10	irgsp1_rep	CDS	15539245	15540057	.	-	0	Parent=Os10t0435900-00
Chr10	irgsp1_rep	mRNA	15546892	15547577	.	-	.	ID=Os10t0436100-00;Name=Os10t0436100-00;Locus_id=Os10g0436100;Oryzabase Gene Symbol Synonym(s)=OsMB43%2C MB43;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 43%2C MDC protein with a BTB domain 43%2C MDC protein having BTB domain 43;Note=BTB/POZ-like domain containing protein.;Transcript_evidence=AK369602 (DDBJ);ORF_evidence=GeneMark;GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);Oryzabase=21237;TENOR=Os10t0436100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	15547533	15547577	.	-	.	Parent=Os10t0436100-00
Chr10	irgsp1_rep	CDS	15546892	15547532	.	-	0	Parent=Os10t0436100-00
Chr10	irgsp1_rep	mRNA	15593391	15594278	.	-	.	ID=Os10t0436700-00;Name=Os10t0436700-00;Locus_id=Os10g0436700;Note=Similar to BTB/POZ domain containing protein.;Transcript_evidence=AK376687 (DDBJ);ORF_evidence=Q7XE80 (UniProt);TENOR=Os10t0436700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	15593745	15594278	.	-	0	Parent=Os10t0436700-00
Chr10	irgsp1_rep	three_prime_UTR	15593391	15593744	.	-	.	Parent=Os10t0436700-00
Chr10	irgsp1_rep	mRNA	15601210	15604281	.	+	.	ID=Os10t0436800-01;Name=Os10t0436800-01;Locus_id=Os10g0436800;Note=Similar to flavoprotein wrbA.;Transcript_evidence=AK241539 (DDBJ%2C Best hit);ORF_evidence=NP_001147306.1 (RefSeq);GO=Biological Process: negative regulation of transcription%2C DNA-dependent (GO:0045892),Molecular Function: FMN binding (GO:0010181),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=NADPH-dependent FMN reductase (IPR005025),Flavodoxin/nitric oxide synthase (IPR008254),Flavoprotein WrbA (IPR010089);NIAS_FLcDNA=J065174L12;TENOR=Os10t0436800-01;KEGG=Os10t0436800-01
Chr10	irgsp1_rep	five_prime_UTR	15601210	15601441	.	+	.	Parent=Os10t0436800-01
Chr10	irgsp1_rep	CDS	15601442	15601965	.	+	0	Parent=Os10t0436800-01
Chr10	irgsp1_rep	CDS	15603712	15603940	.	+	1	Parent=Os10t0436800-01
Chr10	irgsp1_rep	three_prime_UTR	15603941	15604281	.	+	.	Parent=Os10t0436800-01
Chr10	irgsp1_rep	mRNA	15601595	15603927	.	-	.	ID=Os10t0436825-00;Name=Os10t0436825-00;Locus_id=Os10g0436825;Note=Hypothetical protein.;Transcript_evidence=BT017374 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0436825-00
Chr10	irgsp1_rep	five_prime_UTR	15603743	15603927	.	-	.	Parent=Os10t0436825-00
Chr10	irgsp1_rep	CDS	15603727	15603742	.	-	0	Parent=Os10t0436825-00
Chr10	irgsp1_rep	CDS	15601606	15601973	.	-	2	Parent=Os10t0436825-00
Chr10	irgsp1_rep	three_prime_UTR	15601595	15601605	.	-	.	Parent=Os10t0436825-00
Chr10	irgsp1_rep	mRNA	15605606	15609755	.	+	.	ID=Os10t0436850-00;Name=Os10t0436850-00;Locus_id=Os10g0436850;Note=EMSY N-terminal domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G5W2 (UniProt);InterPro=EMSY N-terminal (IPR005491);TENOR=Os10t0436850-00
Chr10	irgsp1_rep	CDS	15605606	15605737	.	+	0	Parent=Os10t0436850-00
Chr10	irgsp1_rep	CDS	15606076	15606179	.	+	0	Parent=Os10t0436850-00
Chr10	irgsp1_rep	CDS	15606426	15606600	.	+	1	Parent=Os10t0436850-00
Chr10	irgsp1_rep	CDS	15606882	15606991	.	+	0	Parent=Os10t0436850-00
Chr10	irgsp1_rep	CDS	15607074	15607241	.	+	1	Parent=Os10t0436850-00
Chr10	irgsp1_rep	CDS	15607348	15607513	.	+	1	Parent=Os10t0436850-00
Chr10	irgsp1_rep	CDS	15607939	15608217	.	+	0	Parent=Os10t0436850-00
Chr10	irgsp1_rep	CDS	15608613	15608678	.	+	0	Parent=Os10t0436850-00
Chr10	irgsp1_rep	CDS	15608787	15608844	.	+	0	Parent=Os10t0436850-00
Chr10	irgsp1_rep	CDS	15609313	15609755	.	+	2	Parent=Os10t0436850-00
Chr10	irgsp1_rep	mRNA	15614210	15616103	.	+	.	ID=Os10t0436900-01;Name=Os10t0436900-01;Locus_id=Os10g0436900;CGSNL Gene Symbol=CCX3;CGSNL Gene Name=CATION/CA2+ EXCHANGER 3;Oryzabase Gene Symbol Synonym(s)=OsCCX3%2C OsNCX11%2C NCX11;Oryzabase Gene Name Synonym(s)=cation/Ca2+ exchanger 3%2C Na+/Ca2+ Exchanger 11%2C Sodium/calcium exchanger 11;Note=Sodium/calcium exchanger membrane region domain containing protein.;Transcript_evidence=AK100938 (DDBJ%2C Best hit);ORF_evidence=Q2RBL7 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Sodium/calcium exchanger membrane region (IPR004837);NIAS_FLcDNA=J023138B21;Oryzabase=15458;TENOR=Os10t0436900-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	15614210	15614216	.	+	.	Parent=Os10t0436900-01
Chr10	irgsp1_rep	CDS	15614217	15616010	.	+	0	Parent=Os10t0436900-01
Chr10	irgsp1_rep	three_prime_UTR	15616011	15616103	.	+	.	Parent=Os10t0436900-01
Chr10	irgsp1_rep	mRNA	15614501	15615974	.	-	.	ID=Os10t0436950-00;Name=Os10t0436950-00;Locus_id=Os10g0436950;Note=Hypothetical protein.;Transcript_evidence=AK358096 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0436950-00
Chr10	irgsp1_rep	five_prime_UTR	15615816	15615974	.	-	.	Parent=Os10t0436950-00
Chr10	irgsp1_rep	CDS	15615282	15615815	.	-	0	Parent=Os10t0436950-00
Chr10	irgsp1_rep	three_prime_UTR	15615148	15615281	.	-	.	Parent=Os10t0436950-00
Chr10	irgsp1_rep	three_prime_UTR	15614501	15615091	.	-	.	Parent=Os10t0436950-00
Chr10	irgsp1_rep	mRNA	15621355	15624642	.	+	.	ID=Os10t0437000-01;Name=Os10t0437000-01;Locus_id=Os10g0437000;Note=Similar to Secondary cell wall-related glycosyltransferase family 14.;Transcript_evidence=AK061419 (DDBJ%2C Best hit);ORF_evidence=Q5BM97 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: acetylglucosaminyltransferase activity (GO:0008375);InterPro=Glycosyl transferase%2C family 14 (IPR003406);NIAS_FLcDNA=006-306-F02;Expression=AK061419;TENOR=Os10t0437000-01;KEGG=Os10t0437000-01
Chr10	irgsp1_rep	five_prime_UTR	15621355	15621578	.	+	.	Parent=Os10t0437000-01
Chr10	irgsp1_rep	CDS	15621579	15622107	.	+	0	Parent=Os10t0437000-01
Chr10	irgsp1_rep	CDS	15622217	15622292	.	+	2	Parent=Os10t0437000-01
Chr10	irgsp1_rep	CDS	15622492	15622522	.	+	1	Parent=Os10t0437000-01
Chr10	irgsp1_rep	three_prime_UTR	15622523	15622627	.	+	.	Parent=Os10t0437000-01
Chr10	irgsp1_rep	three_prime_UTR	15623902	15624642	.	+	.	Parent=Os10t0437000-01
Chr10	irgsp1_rep	mRNA	15621359	15624666	.	+	.	ID=Os10t0437000-02;Name=Os10t0437000-02;Locus_id=Os10g0437000;Note=Glycosyl transferase%2C family 14 protein.;Transcript_evidence=AK071270 (DDBJ%2C Best hit);ORF_evidence=Q5BM97 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: acetylglucosaminyltransferase activity (GO:0008375);InterPro=Glycosyl transferase%2C family 14 (IPR003406);NIAS_FLcDNA=J023087N08;Expression=AK071270;TENOR=Os10t0437000-02;KEGG=Os10t0437000-02 (EC:2.4.2.26)
Chr10	irgsp1_rep	five_prime_UTR	15621359	15621578	.	+	.	Parent=Os10t0437000-02
Chr10	irgsp1_rep	CDS	15621579	15622107	.	+	0	Parent=Os10t0437000-02
Chr10	irgsp1_rep	CDS	15622217	15622292	.	+	2	Parent=Os10t0437000-02
Chr10	irgsp1_rep	CDS	15622500	15622627	.	+	1	Parent=Os10t0437000-02
Chr10	irgsp1_rep	CDS	15623902	15624431	.	+	2	Parent=Os10t0437000-02
Chr10	irgsp1_rep	three_prime_UTR	15624432	15624666	.	+	.	Parent=Os10t0437000-02
Chr10	irgsp1_rep	mRNA	15621359	15624665	.	+	.	ID=Os10t0437000-03;Name=Os10t0437000-03;Locus_id=Os10g0437000;Note=Similar to Secondary cell wall-related glycosyltransferase family 14.;Transcript_evidence=AK105017 (DDBJ%2C Best hit);ORF_evidence=Q5BM97 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: acetylglucosaminyltransferase activity (GO:0008375);InterPro=Glycosyl transferase%2C family 14 (IPR003406);NIAS_FLcDNA=001-008-G02;TENOR=Os10t0437000-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	15621359	15621578	.	+	.	Parent=Os10t0437000-03
Chr10	irgsp1_rep	CDS	15621579	15622107	.	+	0	Parent=Os10t0437000-03
Chr10	irgsp1_rep	CDS	15622217	15622292	.	+	2	Parent=Os10t0437000-03
Chr10	irgsp1_rep	CDS	15622504	15622522	.	+	1	Parent=Os10t0437000-03
Chr10	irgsp1_rep	three_prime_UTR	15622523	15622627	.	+	.	Parent=Os10t0437000-03
Chr10	irgsp1_rep	three_prime_UTR	15623902	15624665	.	+	.	Parent=Os10t0437000-03
Chr10	irgsp1_rep	mRNA	15629460	15635858	.	-	.	ID=Os10t0437100-01;Name=Os10t0437100-01;Locus_id=Os10g0437100;Oryzabase Gene Symbol Synonym(s)=OsCAT7;Oryzabase Gene Name Synonym(s)=cationic amino acid transporter 7;Note=Amino acid/polyamine transporter I family protein.;Transcript_evidence=AK100205 (DDBJ%2C Best hit);ORF_evidence=XP_002319189.1 (RefSeq);GO=Biological Process: amino acid transmembrane transport (GO:0003333),Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: amino acid transmembrane transporter activity (GO:0015171);InterPro=Amino acid/polyamine transporter I (IPR002293),Amino acid permease domain (IPR004841),Cationic amino acid transporter (IPR015606);NIAS_FLcDNA=J023041E12;Oryzabase=18541;Expression=AK100205;TENOR=Os10t0437100-01;KEGG=Os10t0437100-01
Chr10	irgsp1_rep	five_prime_UTR	15635823	15635858	.	-	.	Parent=Os10t0437100-01
Chr10	irgsp1_rep	CDS	15635609	15635822	.	-	0	Parent=Os10t0437100-01
Chr10	irgsp1_rep	CDS	15634579	15634780	.	-	2	Parent=Os10t0437100-01
Chr10	irgsp1_rep	CDS	15634382	15634466	.	-	1	Parent=Os10t0437100-01
Chr10	irgsp1_rep	CDS	15634168	15634308	.	-	0	Parent=Os10t0437100-01
Chr10	irgsp1_rep	CDS	15633950	15634068	.	-	0	Parent=Os10t0437100-01
Chr10	irgsp1_rep	CDS	15633770	15633866	.	-	1	Parent=Os10t0437100-01
Chr10	irgsp1_rep	CDS	15633137	15633309	.	-	0	Parent=Os10t0437100-01
Chr10	irgsp1_rep	CDS	15632951	15633017	.	-	1	Parent=Os10t0437100-01
Chr10	irgsp1_rep	CDS	15632556	15632714	.	-	0	Parent=Os10t0437100-01
Chr10	irgsp1_rep	CDS	15632288	15632468	.	-	0	Parent=Os10t0437100-01
Chr10	irgsp1_rep	CDS	15630549	15630675	.	-	2	Parent=Os10t0437100-01
Chr10	irgsp1_rep	CDS	15630359	15630465	.	-	1	Parent=Os10t0437100-01
Chr10	irgsp1_rep	CDS	15630177	15630252	.	-	2	Parent=Os10t0437100-01
Chr10	irgsp1_rep	CDS	15629769	15629889	.	-	1	Parent=Os10t0437100-01
Chr10	irgsp1_rep	three_prime_UTR	15629460	15629768	.	-	.	Parent=Os10t0437100-01
Chr10	irgsp1_rep	mRNA	15637609	15644444	.	-	.	ID=Os10t0437200-01;Name=Os10t0437200-01;Locus_id=Os10g0437200;Note=Similar to Nucleolar protein-like.;Transcript_evidence=AK066936 (DDBJ%2C Best hit);ORF_evidence=Q7XE52 (UniProt);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: 3'-5' exonuclease activity (GO:0008408);InterPro=3'-5' exonuclease (IPR002562),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J013091N21;Expression=AK066936;TENOR=Os10t0437200-01;KEGG=Os10t0437200-01 (EC:3.1.13.-)
Chr10	irgsp1_rep	five_prime_UTR	15644366	15644444	.	-	.	Parent=Os10t0437200-01
Chr10	irgsp1_rep	CDS	15643670	15644365	.	-	0	Parent=Os10t0437200-01
Chr10	irgsp1_rep	CDS	15642785	15642940	.	-	0	Parent=Os10t0437200-01
Chr10	irgsp1_rep	CDS	15641541	15641699	.	-	0	Parent=Os10t0437200-01
Chr10	irgsp1_rep	CDS	15641368	15641451	.	-	0	Parent=Os10t0437200-01
Chr10	irgsp1_rep	CDS	15641170	15641249	.	-	0	Parent=Os10t0437200-01
Chr10	irgsp1_rep	CDS	15640989	15641043	.	-	1	Parent=Os10t0437200-01
Chr10	irgsp1_rep	three_prime_UTR	15640763	15640988	.	-	.	Parent=Os10t0437200-01
Chr10	irgsp1_rep	three_prime_UTR	15639838	15640504	.	-	.	Parent=Os10t0437200-01
Chr10	irgsp1_rep	three_prime_UTR	15639590	15639759	.	-	.	Parent=Os10t0437200-01
Chr10	irgsp1_rep	three_prime_UTR	15639190	15639471	.	-	.	Parent=Os10t0437200-01
Chr10	irgsp1_rep	three_prime_UTR	15638990	15639103	.	-	.	Parent=Os10t0437200-01
Chr10	irgsp1_rep	three_prime_UTR	15637609	15638502	.	-	.	Parent=Os10t0437200-01
Chr10	irgsp1_rep	mRNA	15659478	15661329	.	+	.	ID=Os10t0437400-00;Name=Os10t0437400-00;Locus_id=Os10g0437400;CGSNL Gene Symbol=LAC19;CGSNL Gene Name=LACCASE 19;Oryzabase Gene Symbol Synonym(s)=OsLAC19;Oryzabase Gene Name Synonym(s)=laccase 19;Note=Putative laccase-16.;Transcript_evidence=Q7XE50 (UniProt);ORF_evidence=Q7XE50 (UniProt);GO=Biological Process: lignin catabolic process (GO:0046274),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: apoplast (GO:0048046),Molecular Function: copper ion binding (GO:0005507),Molecular Function: laccase activity (GO:0008471),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Multicopper oxidase%2C type 1 (IPR001117),Multicopper oxidase%2C copper-binding site (IPR002355),Cupredoxin (IPR008972),Multicopper oxidase%2C type 2 (IPR011706),Multicopper oxidase%2C type 3 (IPR011707),Laccase (IPR017761);Oryzabase=18574;TENOR=Os10t0437400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	15659478	15659790	.	+	0	Parent=Os10t0437400-00
Chr10	irgsp1_rep	CDS	15659988	15660049	.	+	2	Parent=Os10t0437400-00
Chr10	irgsp1_rep	CDS	15660143	15660523	.	+	0	Parent=Os10t0437400-00
Chr10	irgsp1_rep	CDS	15660581	15661097	.	+	0	Parent=Os10t0437400-00
Chr10	irgsp1_rep	CDS	15661199	15661329	.	+	2	Parent=Os10t0437400-00
Chr10	irgsp1_rep	mRNA	15663637	15664570	.	+	.	ID=Os10t0437500-01;Name=Os10t0437500-01;Locus_id=Os10g0437500;Note=Rossmann-like alpha/beta/alpha sandwich fold domain containing protein.;Transcript_evidence=AK107152 (DDBJ%2C Best hit);ORF_evidence=A2Z7R2 (UniProt);GO=Biological Process: response to stress (GO:0006950);InterPro=Universal stress protein A (IPR006015),UspA (IPR006016),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=002-124-E04;Expression=AK107152;TENOR=Os10t0437500-01;KEGG=Os10t0437500-01
Chr10	irgsp1_rep	five_prime_UTR	15663637	15663701	.	+	.	Parent=Os10t0437500-01
Chr10	irgsp1_rep	CDS	15663702	15663897	.	+	0	Parent=Os10t0437500-01
Chr10	irgsp1_rep	CDS	15663978	15664206	.	+	2	Parent=Os10t0437500-01
Chr10	irgsp1_rep	CDS	15664286	15664406	.	+	1	Parent=Os10t0437500-01
Chr10	irgsp1_rep	three_prime_UTR	15664407	15664570	.	+	.	Parent=Os10t0437500-01
Chr10	irgsp1_rep	mRNA	15670942	15671924	.	-	.	ID=Os10t0437525-00;Name=Os10t0437525-00;Locus_id=Os10g0437525;Note=Hypothetical protein.;Transcript_evidence=CU405726 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os10t0437525-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	15671749	15671924	.	-	.	Parent=Os10t0437525-00
Chr10	irgsp1_rep	CDS	15671221	15671748	.	-	0	Parent=Os10t0437525-00
Chr10	irgsp1_rep	three_prime_UTR	15671197	15671220	.	-	.	Parent=Os10t0437525-00
Chr10	irgsp1_rep	three_prime_UTR	15670942	15671094	.	-	.	Parent=Os10t0437525-00
Chr10	irgsp1_rep	mRNA	15671258	15672062	.	+	.	ID=Os10t0437550-01;Name=Os10t0437550-01;Locus_id=Os10g0437550;Note=Similar to H0821G03.14 protein.;Transcript_evidence=AK242016 (DDBJ%2C Best hit);ORF_evidence=Q25A02 (UniProt);NIAS_FLcDNA=J075109K08;TENOR=Os10t0437550-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	15671258	15671404	.	+	.	Parent=Os10t0437550-01
Chr10	irgsp1_rep	CDS	15671405	15671836	.	+	0	Parent=Os10t0437550-01
Chr10	irgsp1_rep	three_prime_UTR	15671837	15672062	.	+	.	Parent=Os10t0437550-01
Chr10	irgsp1_rep	mRNA	15673243	15681075	.	+	.	ID=Os10t0437600-00;Name=Os10t0437600-00;Locus_id=Os10g0437600;CGSNL Gene Symbol=SSIIC;CGSNL Gene Name=SOLUBLE STARCH SYNTHASE IIC;Oryzabase Gene Symbol Synonym(s)=OsSSIIc%2C SSII-1%2C SSII1;Oryzabase Gene Name Synonym(s)="Soluble starch synthase 2-1%2C chloroplastic/amyloplastic"%2C Soluble starch synthase II-1;Note=Similar to Starch synthase II%2C chloroplast precursor (EC 2.4.1.21) (SS II) (GBSSII) (Granule-bound starch synthase II).;Transcript_evidence=AF383878 (DDBJ%2C Best hit);ORF_evidence=D0TZN5 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Biological Process: glucan biosynthetic process (GO:0009250),Molecular Function: starch synthase activity (GO:0009011);InterPro=Glycosyl transferase%2C family 1 (IPR001296),Glycogen/starch synthases%2C ADP-glucose type (IPR011835),Starch synthase%2C catalytic domain (IPR013534);Oryzabase=8104;Expression=AF383878;TENOR=Os10t0437600-00;KEGG=Os10t0437600-00 (EC:2.4.1.21)
Chr10	irgsp1_rep	five_prime_UTR	15673243	15673327	.	+	.	Parent=Os10t0437600-00
Chr10	irgsp1_rep	CDS	15673328	15673474	.	+	0	Parent=Os10t0437600-00
Chr10	irgsp1_rep	CDS	15673876	15673983	.	+	0	Parent=Os10t0437600-00
Chr10	irgsp1_rep	CDS	15674126	15674350	.	+	0	Parent=Os10t0437600-00
Chr10	irgsp1_rep	CDS	15675194	15675530	.	+	0	Parent=Os10t0437600-00
Chr10	irgsp1_rep	CDS	15677076	15677143	.	+	2	Parent=Os10t0437600-00
Chr10	irgsp1_rep	CDS	15677961	15678038	.	+	0	Parent=Os10t0437600-00
Chr10	irgsp1_rep	CDS	15678119	15678229	.	+	0	Parent=Os10t0437600-00
Chr10	irgsp1_rep	CDS	15678395	15678439	.	+	0	Parent=Os10t0437600-00
Chr10	irgsp1_rep	CDS	15678845	15679018	.	+	0	Parent=Os10t0437600-00
Chr10	irgsp1_rep	CDS	15679551	15680507	.	+	0	Parent=Os10t0437600-00
Chr10	irgsp1_rep	three_prime_UTR	15680508	15681075	.	+	.	Parent=Os10t0437600-00
Chr10	irgsp1_rep	mRNA	15681535	15683594	.	+	.	ID=Os10t0437700-01;Name=Os10t0437700-01;Locus_id=Os10g0437700;Note=Heat shock protein Hsp20 domain containing protein.;Transcript_evidence=AK062774 (DDBJ%2C Best hit);ORF_evidence=NP_001152078.1 (RefSeq);InterPro=Heat shock protein Hsp20 (IPR002068),HSP20-like chaperone (IPR008978);NIAS_FLcDNA=001-107-A06;Expression=AK062774;TENOR=Os10t0437700-01;KEGG=Os10t0437700-01
Chr10	irgsp1_rep	five_prime_UTR	15681535	15681639	.	+	.	Parent=Os10t0437700-01
Chr10	irgsp1_rep	CDS	15681640	15681740	.	+	0	Parent=Os10t0437700-01
Chr10	irgsp1_rep	CDS	15682952	15683342	.	+	1	Parent=Os10t0437700-01
Chr10	irgsp1_rep	three_prime_UTR	15683343	15683594	.	+	.	Parent=Os10t0437700-01
Chr10	irgsp1_rep	mRNA	15682907	15683215	.	-	.	ID=Os10t0437750-00;Name=Os10t0437750-00;Locus_id=Os10g0437750;Note=Conserved hypothetical protein.;Transcript_evidence=AK358092 (DDBJ);ORF_evidence=F2D2I5 (UniProt);TENOR=Os10t0437750-00
Chr10	irgsp1_rep	CDS	15682907	15683215	.	-	0	Parent=Os10t0437750-00
Chr10	irgsp1_rep	mRNA	15688756	15689850	.	+	.	ID=Os10t0437900-00;Name=Os10t0437900-00;Locus_id=Os10g0437900;Note=Heat shock protein Hsp20 domain containing protein.;Transcript_evidence=EU967469 (DDBJ);ORF_evidence=NP_001150564.1 (RefSeq);InterPro=Heat shock protein Hsp20 (IPR002068),HSP20-like chaperone (IPR008978);TENOR=Os10t0437900-00;KEGG=Os10t0437900-00
Chr10	irgsp1_rep	five_prime_UTR	15688756	15688772	.	+	.	Parent=Os10t0437900-00
Chr10	irgsp1_rep	CDS	15688773	15688893	.	+	0	Parent=Os10t0437900-00
Chr10	irgsp1_rep	CDS	15689420	15689850	.	+	2	Parent=Os10t0437900-00
Chr10	irgsp1_rep	mRNA	15690227	15692941	.	-	.	ID=Os10t0438000-00;Name=Os10t0438000-00;Locus_id=Os10g0438000;Oryzabase Gene Name Synonym(s)=Potassium channel tetramerisation domain-containing protein 9;Note=Similar to Potassium channel tetramerisation domain-containing protein 9.;Transcript_evidence=ab initio prediction;ORF_evidence=B6TKK7 (UniProt);GO=Biological Process: potassium ion transport (GO:0006813),Cellular Component: voltage-gated potassium channel complex (GO:0008076),Cellular Component: membrane (GO:0016020),Molecular Function: voltage-gated potassium channel activity (GO:0005249),Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),Pentapeptide repeat (IPR001646),Potassium channel%2C voltage dependent%2C Kv%2C tetramerisation (IPR003131),BTB/POZ fold (IPR011333);Oryzabase=21963;TENOR=Os10t0438000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	15692914	15692941	.	-	0	Parent=Os10t0438000-00
Chr10	irgsp1_rep	CDS	15692709	15692815	.	-	2	Parent=Os10t0438000-00
Chr10	irgsp1_rep	CDS	15692495	15692635	.	-	0	Parent=Os10t0438000-00
Chr10	irgsp1_rep	CDS	15692219	15692380	.	-	0	Parent=Os10t0438000-00
Chr10	irgsp1_rep	CDS	15692020	15692103	.	-	0	Parent=Os10t0438000-00
Chr10	irgsp1_rep	CDS	15691763	15691809	.	-	0	Parent=Os10t0438000-00
Chr10	irgsp1_rep	CDS	15691580	15691653	.	-	1	Parent=Os10t0438000-00
Chr10	irgsp1_rep	CDS	15691388	15691446	.	-	2	Parent=Os10t0438000-00
Chr10	irgsp1_rep	CDS	15690879	15690938	.	-	0	Parent=Os10t0438000-00
Chr10	irgsp1_rep	CDS	15690543	15690623	.	-	0	Parent=Os10t0438000-00
Chr10	irgsp1_rep	CDS	15690227	15690280	.	-	0	Parent=Os10t0438000-00
Chr10	irgsp1_rep	mRNA	15695559	15696486	.	+	.	ID=Os10t0438100-00;Name=Os10t0438100-00;Locus_id=Os10g0438100;Oryzabase Gene Symbol Synonym(s)=OSK2;Oryzabase Gene Name Synonym(s)=S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 2%2C Oryza sativa SKP1-like gene 2;Note=Similar to Fimbriata-associated protein (Fragment).;Transcript_evidence=tplb0006i07 (Wheat FLcDNA);ORF_evidence=NP_001064680.1 (RefSeq);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);InterPro=SKP1 component (IPR001232),BTB/POZ fold (IPR011333),SKP1 component%2C dimerisation (IPR016072),SKP1 component%2C POZ (IPR016073);Oryzabase=18283;TENOR=Os10t0438100-00;KEGG=Os10t0438100-00
Chr10	irgsp1_rep	five_prime_UTR	15695559	15695677	.	+	.	Parent=Os10t0438100-00
Chr10	irgsp1_rep	CDS	15695678	15696163	.	+	0	Parent=Os10t0438100-00
Chr10	irgsp1_rep	CDS	15696278	15696454	.	+	0	Parent=Os10t0438100-00
Chr10	irgsp1_rep	three_prime_UTR	15696455	15696486	.	+	.	Parent=Os10t0438100-00
Chr10	irgsp1_rep	mRNA	15698291	15700037	.	-	.	ID=Os10t0438300-00;Name=Os10t0438300-00;Locus_id=Os10g0438300;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3C537 (UniProt);TENOR=Os10t0438300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	15699774	15700037	.	-	0	Parent=Os10t0438300-00
Chr10	irgsp1_rep	CDS	15699217	15699687	.	-	0	Parent=Os10t0438300-00
Chr10	irgsp1_rep	CDS	15698933	15699136	.	-	0	Parent=Os10t0438300-00
Chr10	irgsp1_rep	CDS	15698291	15698671	.	-	0	Parent=Os10t0438300-00
Chr10	irgsp1_rep	mRNA	15702440	15708211	.	-	.	ID=Os10t0438301-00;Name=Os10t0438301-00;Locus_id=Os10g0438301;Note=Hypothetical conserved gene.;Transcript_evidence=CT835724 (DDBJ%2C Best hit);ORF_evidence=B8BAE2 (UniProt);TENOR=Os10t0438301-00;KEGG=Os10t0438301-00
Chr10	irgsp1_rep	five_prime_UTR	15708128	15708211	.	-	.	Parent=Os10t0438301-00
Chr10	irgsp1_rep	CDS	15708097	15708127	.	-	0	Parent=Os10t0438301-00
Chr10	irgsp1_rep	CDS	15707817	15707980	.	-	2	Parent=Os10t0438301-00
Chr10	irgsp1_rep	three_prime_UTR	15707627	15707816	.	-	.	Parent=Os10t0438301-00
Chr10	irgsp1_rep	three_prime_UTR	15702549	15702589	.	-	.	Parent=Os10t0438301-00
Chr10	irgsp1_rep	three_prime_UTR	15702440	15702542	.	-	.	Parent=Os10t0438301-00
Chr10	irgsp1_rep	mRNA	15730621	15733992	.	+	.	ID=Os10t0438500-01;Name=Os10t0438500-01;Locus_id=Os10g0438500;Oryzabase Gene Symbol Synonym(s)=OsFbox554%2C Os_F0677;Oryzabase Gene Name Synonym(s)=F-box protein 554;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK103093 (DDBJ%2C Best hit);ORF_evidence=B6THI9 (UniProt);NIAS_FLcDNA=J033118K01;Oryzabase=17323;Expression=AK103093;TENOR=Os10t0438500-01;KEGG=Os10t0438500-01
Chr10	irgsp1_rep	five_prime_UTR	15730621	15730827	.	+	.	Parent=Os10t0438500-01
Chr10	irgsp1_rep	five_prime_UTR	15732183	15732317	.	+	.	Parent=Os10t0438500-01
Chr10	irgsp1_rep	CDS	15732318	15732656	.	+	0	Parent=Os10t0438500-01
Chr10	irgsp1_rep	CDS	15732737	15732811	.	+	0	Parent=Os10t0438500-01
Chr10	irgsp1_rep	CDS	15733267	15733376	.	+	0	Parent=Os10t0438500-01
Chr10	irgsp1_rep	CDS	15733464	15733728	.	+	1	Parent=Os10t0438500-01
Chr10	irgsp1_rep	three_prime_UTR	15733729	15733992	.	+	.	Parent=Os10t0438500-01
Chr10	irgsp1_rep	mRNA	15734082	15736908	.	-	.	ID=Os10t0438600-01;Name=Os10t0438600-01;Locus_id=Os10g0438600;CGSNL Gene Symbol=GELP107;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 107;Oryzabase Gene Symbol Synonym(s)=OsGELP107;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 107;Note=Similar to Family II lipase EXL3.;Transcript_evidence=AK065583 (DDBJ%2C Best hit);ORF_evidence=NP_001150849.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: lipase activity (GO:0016298),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087),Lipase%2C GDSL%2C active site (IPR008265);NIAS_FLcDNA=J013034G20;Oryzabase=11057;Expression=AK065583;TENOR=Os10t0438600-01;KEGG=Os10t0438600-01
Chr10	irgsp1_rep	five_prime_UTR	15736866	15736908	.	-	.	Parent=Os10t0438600-01
Chr10	irgsp1_rep	CDS	15736598	15736865	.	-	0	Parent=Os10t0438600-01
Chr10	irgsp1_rep	CDS	15735965	15736095	.	-	2	Parent=Os10t0438600-01
Chr10	irgsp1_rep	CDS	15735390	15735882	.	-	0	Parent=Os10t0438600-01
Chr10	irgsp1_rep	CDS	15734466	15734650	.	-	2	Parent=Os10t0438600-01
Chr10	irgsp1_rep	three_prime_UTR	15734082	15734465	.	-	.	Parent=Os10t0438600-01
Chr10	irgsp1_rep	mRNA	15737591	15739379	.	+	.	ID=Os10t0438700-01;Name=Os10t0438700-01;Locus_id=Os10g0438700;Note=Protein of unknown function DUF343 family protein.;Transcript_evidence=AK106662 (DDBJ%2C Best hit);ORF_evidence=B8BH32 (UniProt);InterPro=Uncharacterised protein family UPF0434/Trm112 (IPR005651);NIAS_FLcDNA=002-113-H02;Expression=AK106662;TENOR=Os10t0438700-01;KEGG=Os10t0438700-01
Chr10	irgsp1_rep	five_prime_UTR	15737591	15737608	.	+	.	Parent=Os10t0438700-01
Chr10	irgsp1_rep	CDS	15737609	15737736	.	+	0	Parent=Os10t0438700-01
Chr10	irgsp1_rep	CDS	15737865	15737919	.	+	1	Parent=Os10t0438700-01
Chr10	irgsp1_rep	CDS	15739069	15739176	.	+	0	Parent=Os10t0438700-01
Chr10	irgsp1_rep	three_prime_UTR	15739177	15739379	.	+	.	Parent=Os10t0438700-01
Chr10	irgsp1_rep	mRNA	15741865	15742477	.	+	.	ID=Os10t0438800-01;Name=Os10t0438800-01;Locus_id=Os10g0438800;Note=Similar to RING-H2 finger protein ATL2E.;Transcript_evidence=AK063228 (DDBJ%2C Best hit);ORF_evidence=NP_001151998.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=001-112-F02;Expression=AK063228;TENOR=Os10t0438800-01;KEGG=Os10t0438800-01
Chr10	irgsp1_rep	five_prime_UTR	15741865	15741906	.	+	.	Parent=Os10t0438800-01
Chr10	irgsp1_rep	CDS	15741907	15742308	.	+	0	Parent=Os10t0438800-01
Chr10	irgsp1_rep	three_prime_UTR	15742309	15742477	.	+	.	Parent=Os10t0438800-01
Chr10	irgsp1_rep	mRNA	15751894	15753575	.	+	.	ID=Os10t0439100-00;Name=Os10t0439100-00;Locus_id=Os10g0439100;CGSNL Gene Symbol=EXPA27;CGSNL Gene Name=ALPHA-EXPANSIN 27;Oryzabase Gene Symbol Synonym(s)=OsEXPA27;Note=Similar to cDNA clone:002-180-G03%2C full insert sequence.;Transcript_evidence=CT837879 (DDBJ%2C Best hit);ORF_evidence=B7F3J7 (UniProt);GO=Biological Process: plant-type cell wall organization (GO:0009664),Cellular Component: extracellular region (GO:0005576);InterPro=Expansin (IPR002963),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);Oryzabase=23596;TENOR=Os10t0439100-00;KEGG=Os10t0439100-00
Chr10	irgsp1_rep	five_prime_UTR	15751894	15751980	.	+	.	Parent=Os10t0439100-00
Chr10	irgsp1_rep	CDS	15751981	15752113	.	+	0	Parent=Os10t0439100-00
Chr10	irgsp1_rep	CDS	15752637	15753271	.	+	2	Parent=Os10t0439100-00
Chr10	irgsp1_rep	three_prime_UTR	15753272	15753575	.	+	.	Parent=Os10t0439100-00
Chr10	irgsp1_rep	mRNA	15754880	15755718	.	+	.	ID=Os10t0439166-00;Name=Os10t0439166-00;Locus_id=Os10g0439166;Note=Hypothetical gene.;Transcript_evidence=BT016845 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0439166-00
Chr10	irgsp1_rep	five_prime_UTR	15754880	15754880	.	+	.	Parent=Os10t0439166-00
Chr10	irgsp1_rep	CDS	15754881	15755190	.	+	0	Parent=Os10t0439166-00
Chr10	irgsp1_rep	CDS	15755446	15755718	.	+	2	Parent=Os10t0439166-00
Chr10	irgsp1_rep	mRNA	15754895	15755880	.	-	.	ID=Os10t0439200-00;Name=Os10t0439200-00;Locus_id=Os10g0439200;CGSNL Gene Symbol=EXPA28;CGSNL Gene Name=ALPHA-EXPANSIN 28;Note=Similar to Expansin-A28.;Transcript_evidence=DQ061067 (DDBJ%2C Best hit);ORF_evidence=Q4PR40 (UniProt);GO=Biological Process: plant-type cell wall organization (GO:0009664),Cellular Component: extracellular region (GO:0005576);InterPro=Expansin (IPR002963),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);Oryzabase=9395;TENOR=Os10t0439200-00
Chr10	irgsp1_rep	five_prime_UTR	15755880	15755880	.	-	.	Parent=Os10t0439200-00
Chr10	irgsp1_rep	CDS	15755437	15755879	.	-	0	Parent=Os10t0439200-00
Chr10	irgsp1_rep	CDS	15754895	15755187	.	-	1	Parent=Os10t0439200-00
Chr10	irgsp1_rep	mRNA	15763820	15764854	.	-	.	ID=Os10t0439266-01;Name=Os10t0439266-01;Locus_id=Os10g0439266;Note=Non-protein coding transcript.;Transcript_evidence=AK288519 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090043H03;TENOR=Os10t0439266-01
Chr10	irgsp1_rep	exon	15763820	15764854	.	-	.	Parent=Os10t0439266-01
Chr10	irgsp1_rep	mRNA	15767421	15768355	.	-	.	ID=Os10t0439333-00;Name=Os10t0439333-00;Locus_id=Os10g0439333;Note=Similar to BTB/POZ domain containing protein.;Transcript_evidence=AK376276 (DDBJ);ORF_evidence=Q7XE33 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);TENOR=Os10t0439333-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	15768225	15768355	.	-	.	Parent=Os10t0439333-00
Chr10	irgsp1_rep	CDS	15767421	15768224	.	-	0	Parent=Os10t0439333-00
Chr10	irgsp1_rep	mRNA	15780511	15787965	.	+	.	ID=Os10t0439600-01;Name=Os10t0439600-01;Locus_id=Os10g0439600;Note=Similar to RNA-binding region containing protein 2 (Coactivator of activating protein-1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER). Splice isoform 3.;Transcript_evidence=AK067419 (DDBJ%2C Best hit);ORF_evidence=Q337U3 (UniProt);GO=Biological Process: mRNA processing (GO:0006397),Cellular Component: nucleus (GO:0005634),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723);InterPro=RNA recognition motif domain (IPR000504),Splicing factor%2C CC1-like (IPR006509),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013102K13;Expression=AK067419;TENOR=Os10t0439600-01;KEGG=Os10t0439600-01
Chr10	irgsp1_rep	five_prime_UTR	15780511	15781121	.	+	.	Parent=Os10t0439600-01
Chr10	irgsp1_rep	five_prime_UTR	15781916	15781988	.	+	.	Parent=Os10t0439600-01
Chr10	irgsp1_rep	five_prime_UTR	15782061	15782117	.	+	.	Parent=Os10t0439600-01
Chr10	irgsp1_rep	five_prime_UTR	15782416	15783743	.	+	.	Parent=Os10t0439600-01
Chr10	irgsp1_rep	CDS	15783744	15783965	.	+	0	Parent=Os10t0439600-01
Chr10	irgsp1_rep	CDS	15784665	15784748	.	+	0	Parent=Os10t0439600-01
Chr10	irgsp1_rep	CDS	15784826	15784903	.	+	0	Parent=Os10t0439600-01
Chr10	irgsp1_rep	CDS	15784988	15785071	.	+	0	Parent=Os10t0439600-01
Chr10	irgsp1_rep	CDS	15786048	15786112	.	+	0	Parent=Os10t0439600-01
Chr10	irgsp1_rep	CDS	15786604	15786823	.	+	1	Parent=Os10t0439600-01
Chr10	irgsp1_rep	CDS	15786988	15787076	.	+	0	Parent=Os10t0439600-01
Chr10	irgsp1_rep	CDS	15787494	15787608	.	+	1	Parent=Os10t0439600-01
Chr10	irgsp1_rep	CDS	15787687	15787722	.	+	0	Parent=Os10t0439600-01
Chr10	irgsp1_rep	three_prime_UTR	15787723	15787965	.	+	.	Parent=Os10t0439600-01
Chr10	irgsp1_rep	mRNA	15782080	15788001	.	+	.	ID=Os10t0439600-02;Name=Os10t0439600-02;Locus_id=Os10g0439600;Note=Similar to cDNA clone:J013102K13%2C full insert sequence.;Transcript_evidence=AK058703 (DDBJ%2C Best hit);ORF_evidence=Q337U2 (UniProt);GO=Biological Process: mRNA processing (GO:0006397),Cellular Component: nucleus (GO:0005634),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723);InterPro=RNA recognition motif domain (IPR000504),Splicing factor%2C CC1-like (IPR006509),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-019-C07;Expression=AK058703;TENOR=Os10t0439600-02;KEGG=Os10t0439600-02
Chr10	irgsp1_rep	five_prime_UTR	15782080	15782117	.	+	.	Parent=Os10t0439600-02
Chr10	irgsp1_rep	five_prime_UTR	15782416	15782436	.	+	.	Parent=Os10t0439600-02
Chr10	irgsp1_rep	CDS	15782437	15782471	.	+	0	Parent=Os10t0439600-02
Chr10	irgsp1_rep	CDS	15783752	15783965	.	+	1	Parent=Os10t0439600-02
Chr10	irgsp1_rep	CDS	15784665	15784748	.	+	0	Parent=Os10t0439600-02
Chr10	irgsp1_rep	CDS	15784826	15784903	.	+	0	Parent=Os10t0439600-02
Chr10	irgsp1_rep	CDS	15784988	15785071	.	+	0	Parent=Os10t0439600-02
Chr10	irgsp1_rep	CDS	15786048	15786112	.	+	0	Parent=Os10t0439600-02
Chr10	irgsp1_rep	CDS	15786604	15786823	.	+	1	Parent=Os10t0439600-02
Chr10	irgsp1_rep	CDS	15786988	15787076	.	+	0	Parent=Os10t0439600-02
Chr10	irgsp1_rep	CDS	15787494	15787608	.	+	1	Parent=Os10t0439600-02
Chr10	irgsp1_rep	CDS	15787687	15787722	.	+	0	Parent=Os10t0439600-02
Chr10	irgsp1_rep	three_prime_UTR	15787723	15788001	.	+	.	Parent=Os10t0439600-02
Chr10	irgsp1_rep	mRNA	15789423	15789686	.	-	.	ID=Os10t0439650-00;Name=Os10t0439650-00;Locus_id=Os10g0439650;Note=Non-protein coding transcript.;Transcript_evidence=CT835717 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os10t0439650-00
Chr10	irgsp1_rep	exon	15789423	15789686	.	-	.	Parent=Os10t0439650-00
Chr10	irgsp1_rep	mRNA	15789819	15792462	.	+	.	ID=Os10t0439682-00;Name=Os10t0439682-00;Locus_id=Os10g0439682;Note=Hypothetical protein.;Transcript_evidence=tplb0024g24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0439682-00
Chr10	irgsp1_rep	five_prime_UTR	15789819	15790364	.	+	.	Parent=Os10t0439682-00
Chr10	irgsp1_rep	five_prime_UTR	15791547	15791688	.	+	.	Parent=Os10t0439682-00
Chr10	irgsp1_rep	CDS	15791689	15792084	.	+	0	Parent=Os10t0439682-00
Chr10	irgsp1_rep	three_prime_UTR	15792085	15792462	.	+	.	Parent=Os10t0439682-00
Chr10	irgsp1_rep	mRNA	15791484	15792467	.	-	.	ID=Os10t0439700-00;Name=Os10t0439700-00;Locus_id=Os10g0439700;CGSNL Gene Symbol=CYP71Z3;CGSNL Gene Name=P-450 71Z3;Oryzabase Gene Symbol Synonym(s)=Oscyp71Z3;Oryzabase Gene Name Synonym(s)=CytoChrome P450 71Z3;Note=Similar to CytoChrome P450 family protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XE29 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);Oryzabase=12345;TENOR=Os10t0439700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	15791484	15792467	.	-	0	Parent=Os10t0439700-00
Chr10	irgsp1_rep	mRNA	15796279	15799887	.	-	.	ID=Os10t0439800-00;Name=Os10t0439800-00;Locus_id=Os10g0439800;CGSNL Gene Symbol=CYP71Z4;CGSNL Gene Name=P-450 71Z4;Oryzabase Gene Symbol Synonym(s)=Oscyp71Z4;Oryzabase Gene Name Synonym(s)=CytoChrome P450 71Z4;Note=Similar to H0813E03.1 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XE29 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);Oryzabase=12346;TENOR=Os10t0439800-00;KEGG=Os10t0439800-00
Chr10	irgsp1_rep	CDS	15798955	15799887	.	-	0	Parent=Os10t0439800-00
Chr10	irgsp1_rep	CDS	15796279	15796920	.	-	0	Parent=Os10t0439800-00
Chr10	irgsp1_rep	mRNA	15796355	15799812	.	+	.	ID=Os10t0439862-00;Name=Os10t0439862-00;Locus_id=Os10g0439862;Note=Hypothetical protein.;Transcript_evidence=tplb0057i02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0439862-00
Chr10	irgsp1_rep	five_prime_UTR	15796355	15796880	.	+	.	Parent=Os10t0439862-00
Chr10	irgsp1_rep	CDS	15796881	15796928	.	+	0	Parent=Os10t0439862-00
Chr10	irgsp1_rep	CDS	15798964	15799809	.	+	0	Parent=Os10t0439862-00
Chr10	irgsp1_rep	three_prime_UTR	15799810	15799812	.	+	.	Parent=Os10t0439862-00
Chr10	irgsp1_rep	mRNA	15806654	15811018	.	-	.	ID=Os10t0439924-01;Name=Os10t0439924-01;Locus_id=Os10g0439924;CGSNL Gene Symbol=CYP71Z8;CGSNL Gene Name=P-450 71Z8;Oryzabase Gene Symbol Synonym(s)=Oscyp71Z8;Oryzabase Gene Name Synonym(s)=CytoChrome P450 71Z8;Note=CytoChrome P450 family protein.;Transcript_evidence=AK067591 (DDBJ%2C Best hit);ORF_evidence=Q7XE29 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J013112H19;Oryzabase=12348;TENOR=Os10t0439924-01
Chr10	irgsp1_rep	five_prime_UTR	15810973	15811018	.	-	.	Parent=Os10t0439924-01
Chr10	irgsp1_rep	CDS	15810037	15810972	.	-	0	Parent=Os10t0439924-01
Chr10	irgsp1_rep	CDS	15806942	15807565	.	-	0	Parent=Os10t0439924-01
Chr10	irgsp1_rep	three_prime_UTR	15806654	15806941	.	-	.	Parent=Os10t0439924-01
Chr10	irgsp1_rep	mRNA	15807001	15810900	.	+	.	ID=Os10t0439986-00;Name=Os10t0439986-00;Locus_id=Os10g0439986;Note=Hypothetical protein.;Transcript_evidence=tplb0057i02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0439986-00
Chr10	irgsp1_rep	five_prime_UTR	15807001	15807500	.	+	.	Parent=Os10t0439986-00
Chr10	irgsp1_rep	CDS	15807501	15807578	.	+	0	Parent=Os10t0439986-00
Chr10	irgsp1_rep	CDS	15810043	15810897	.	+	0	Parent=Os10t0439986-00
Chr10	irgsp1_rep	three_prime_UTR	15810898	15810900	.	+	.	Parent=Os10t0439986-00
Chr10	irgsp1_rep	mRNA	15812903	15815637	.	+	.	ID=Os10t0440050-00;Name=Os10t0440050-00;Locus_id=Os10g0440050;Note=Non-protein coding transcript.;Transcript_evidence=BT009415 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0440050-00
Chr10	irgsp1_rep	exon	15812903	15813306	.	+	.	Parent=Os10t0440050-00
Chr10	irgsp1_rep	exon	15814006	15814091	.	+	.	Parent=Os10t0440050-00
Chr10	irgsp1_rep	exon	15814725	15814805	.	+	.	Parent=Os10t0440050-00
Chr10	irgsp1_rep	exon	15815523	15815637	.	+	.	Parent=Os10t0440050-00
Chr10	irgsp1_rep	mRNA	15813098	15817788	.	-	.	ID=Os10t0440100-00;Name=Os10t0440100-00;Locus_id=Os10g0440100;Oryzabase Gene Symbol Synonym(s)=Orysa%3BDP2%2C DP TF;Oryzabase Gene Name Synonym(s)=DP transcription factor;Note=DP TF.;Transcript_evidence=AY224551 (DDBJ%2C Best hit);ORF_evidence=B4FHH8 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: transcription factor complex (GO:0005667),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Transcription factor E2F/dimerisation partner (TDP) (IPR003316),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Transcription factor DP%2C C-terminal (IPR014889),Transcription factor DP (IPR015648),Transcription factor DP%2C subgroup (IPR016556);Oryzabase=13317;Expression=AY224551;TENOR=Os10t0440100-00;KEGG=Os10t0440100-00
Chr10	irgsp1_rep	CDS	15817562	15817788	.	-	0	Parent=Os10t0440100-00
Chr10	irgsp1_rep	CDS	15816689	15816771	.	-	1	Parent=Os10t0440100-00
Chr10	irgsp1_rep	CDS	15816389	15816432	.	-	2	Parent=Os10t0440100-00
Chr10	irgsp1_rep	CDS	15815930	15816007	.	-	0	Parent=Os10t0440100-00
Chr10	irgsp1_rep	CDS	15815703	15815849	.	-	0	Parent=Os10t0440100-00
Chr10	irgsp1_rep	CDS	15815543	15815611	.	-	0	Parent=Os10t0440100-00
Chr10	irgsp1_rep	CDS	15814725	15814823	.	-	0	Parent=Os10t0440100-00
Chr10	irgsp1_rep	CDS	15814021	15814091	.	-	0	Parent=Os10t0440100-00
Chr10	irgsp1_rep	CDS	15813098	15813320	.	-	1	Parent=Os10t0440100-00
Chr10	irgsp1_rep	mRNA	15827417	15827923	.	+	.	ID=Os10t0440500-00;Name=Os10t0440500-00;Locus_id=Os10g0440500;CGSNL Gene Symbol=HMP43;CGSNL Gene Name=HEAVY METAL-ASSOCIATED PROTEIN 43;Oryzabase Gene Symbol Synonym(s)=OsHMP43;Oryzabase Gene Name Synonym(s)=Heavy metal-associated protein 43;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AY224486 (DDBJ%2C Best hit);ORF_evidence=GeneMark;Oryzabase=23558;TENOR=Os10t0440500-00
Chr10	irgsp1_rep	CDS	15827417	15827725	.	+	0	Parent=Os10t0440500-00
Chr10	irgsp1_rep	CDS	15827844	15827923	.	+	0	Parent=Os10t0440500-00
Chr10	irgsp1_rep	mRNA	15869292	15873541	.	+	.	ID=Os10t0441800-01;Name=Os10t0441800-01;Locus_id=Os10g0441800;Oryzabase Gene Symbol Synonym(s)=OsRab5A2%2C Rab5A2;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab5A2;Note=Similar to RAB5B.;Transcript_evidence=AK060324 (DDBJ%2C Best hit),AK070200 (DDBJ%2C Best hit);ORF_evidence=Q9FPK1 (UniProt);GO=Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225);NIAS_FLcDNA=001-007-H06,J023042B11;Oryzabase=11079;Expression=AK060324;TENOR=Os10t0441800-01;KEGG=Os10t0441800-01
Chr10	irgsp1_rep	five_prime_UTR	15869292	15869328	.	+	.	Parent=Os10t0441800-01
Chr10	irgsp1_rep	CDS	15869329	15869506	.	+	0	Parent=Os10t0441800-01
Chr10	irgsp1_rep	CDS	15871281	15871354	.	+	2	Parent=Os10t0441800-01
Chr10	irgsp1_rep	CDS	15871479	15871562	.	+	0	Parent=Os10t0441800-01
Chr10	irgsp1_rep	CDS	15871676	15871770	.	+	0	Parent=Os10t0441800-01
Chr10	irgsp1_rep	CDS	15871959	15872064	.	+	1	Parent=Os10t0441800-01
Chr10	irgsp1_rep	CDS	15872753	15872842	.	+	0	Parent=Os10t0441800-01
Chr10	irgsp1_rep	CDS	15872956	15873042	.	+	0	Parent=Os10t0441800-01
Chr10	irgsp1_rep	CDS	15873196	15873234	.	+	0	Parent=Os10t0441800-01
Chr10	irgsp1_rep	three_prime_UTR	15873235	15873541	.	+	.	Parent=Os10t0441800-01
Chr10	irgsp1_rep	mRNA	15874303	15876563	.	+	.	ID=Os10t0441900-01;Name=Os10t0441900-01;Locus_id=Os10g0441900;Note=Similar to Resistance protein candidate (Fragment).;Transcript_evidence=AK105860 (DDBJ%2C Best hit);ORF_evidence=B9G5Y1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-203-H11;Expression=AK105860;TENOR=Os10t0441900-01;KEGG=Os10t0441900-01
Chr10	irgsp1_rep	five_prime_UTR	15874303	15874344	.	+	.	Parent=Os10t0441900-01
Chr10	irgsp1_rep	CDS	15874345	15876420	.	+	0	Parent=Os10t0441900-01
Chr10	irgsp1_rep	three_prime_UTR	15876421	15876563	.	+	.	Parent=Os10t0441900-01
Chr10	irgsp1_rep	mRNA	15877678	15880050	.	+	.	ID=Os10t0442000-01;Name=Os10t0442000-01;Locus_id=Os10g0442000;Note=Similar to Lectin-like receptor kinase 7%3B2.;Transcript_evidence=AK071359 (DDBJ%2C Best hit);ORF_evidence=A3C558 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023089J23;Expression=AK071359;TENOR=Os10t0442000-01;KEGG=Os10t0442000-01
Chr10	irgsp1_rep	five_prime_UTR	15877678	15877743	.	+	.	Parent=Os10t0442000-01
Chr10	irgsp1_rep	CDS	15877744	15879867	.	+	0	Parent=Os10t0442000-01
Chr10	irgsp1_rep	three_prime_UTR	15879868	15880050	.	+	.	Parent=Os10t0442000-01
Chr10	irgsp1_rep	mRNA	15885058	15893140	.	-	.	ID=Os10t0442100-00;Name=Os10t0442100-00;Locus_id=Os10g0442100;Note=Similar to Phosphoglycerate kinase.;Transcript_evidence=AK333251 (DDBJ);ORF_evidence=Q337T1 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Biological Process: tRNA modification (GO:0006400),Molecular Function: phosphoglycerate kinase activity (GO:0004618),Molecular Function: tRNA (guanine-N7-)-methyltransferase activity (GO:0008176);InterPro=Phosphoglycerate kinase (IPR001576),tRNA (guanine-N-7) methyltransferase (IPR003358),Phosphoglycerate kinase%2C N-terminal (IPR015824),Phosphoglycerate kinase%2C C-terminal (IPR015901);TENOR=Os10t0442100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	15892938	15893140	.	-	.	Parent=Os10t0442100-00
Chr10	irgsp1_rep	CDS	15892935	15892937	.	-	0	Parent=Os10t0442100-00
Chr10	irgsp1_rep	CDS	15891685	15891961	.	-	0	Parent=Os10t0442100-00
Chr10	irgsp1_rep	CDS	15890721	15891064	.	-	2	Parent=Os10t0442100-00
Chr10	irgsp1_rep	CDS	15889340	15889631	.	-	0	Parent=Os10t0442100-00
Chr10	irgsp1_rep	CDS	15889032	15889099	.	-	2	Parent=Os10t0442100-00
Chr10	irgsp1_rep	CDS	15888271	15888522	.	-	0	Parent=Os10t0442100-00
Chr10	irgsp1_rep	CDS	15887450	15887525	.	-	0	Parent=Os10t0442100-00
Chr10	irgsp1_rep	CDS	15886856	15886932	.	-	2	Parent=Os10t0442100-00
Chr10	irgsp1_rep	CDS	15886738	15886787	.	-	0	Parent=Os10t0442100-00
Chr10	irgsp1_rep	CDS	15886080	15886164	.	-	1	Parent=Os10t0442100-00
Chr10	irgsp1_rep	CDS	15885756	15885854	.	-	0	Parent=Os10t0442100-00
Chr10	irgsp1_rep	CDS	15885058	15885261	.	-	0	Parent=Os10t0442100-00
Chr10	irgsp1_rep	mRNA	15893749	15902924	.	-	.	ID=Os10t0442400-01;Name=Os10t0442400-01;Locus_id=Os10g0442400;Note=Similar to UDP-glucoronosyl and UDP-glucosyl transferase family protein%2C expressed.;Transcript_evidence=AK243148 (DDBJ%2C Best hit);ORF_evidence=Q7XE18 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J100032G17;TENOR=Os10t0442400-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	15902817	15902924	.	-	.	Parent=Os10t0442400-01
Chr10	irgsp1_rep	CDS	15902246	15902816	.	-	0	Parent=Os10t0442400-01
Chr10	irgsp1_rep	CDS	15894065	15894987	.	-	2	Parent=Os10t0442400-01
Chr10	irgsp1_rep	three_prime_UTR	15893749	15894064	.	-	.	Parent=Os10t0442400-01
Chr10	irgsp1_rep	mRNA	15894080	15894992	.	+	.	ID=Os10t0442466-00;Name=Os10t0442466-00;Locus_id=Os10g0442466;Note=Hypothetical protein.;Transcript_evidence=EU948535 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0442466-00;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	15894080	15894992	.	+	0	Parent=Os10t0442466-00
Chr10	irgsp1_rep	mRNA	15911688	15914576	.	-	.	ID=Os10t0442532-00;Name=Os10t0442532-00;Locus_id=Os10g0442532;Note=Hypothetical gene.;Transcript_evidence=tplb0012e04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0442532-00;KEGG=Os10t0442532-00
Chr10	irgsp1_rep	five_prime_UTR	15914281	15914576	.	-	.	Parent=Os10t0442532-00
Chr10	irgsp1_rep	five_prime_UTR	15914129	15914191	.	-	.	Parent=Os10t0442532-00
Chr10	irgsp1_rep	five_prime_UTR	15913802	15914039	.	-	.	Parent=Os10t0442532-00
Chr10	irgsp1_rep	five_prime_UTR	15913060	15913699	.	-	.	Parent=Os10t0442532-00
Chr10	irgsp1_rep	CDS	15912925	15913059	.	-	0	Parent=Os10t0442532-00
Chr10	irgsp1_rep	CDS	15912580	15912804	.	-	0	Parent=Os10t0442532-00
Chr10	irgsp1_rep	CDS	15911688	15911843	.	-	0	Parent=Os10t0442532-00
Chr10	irgsp1_rep	mRNA	15914701	15915920	.	+	.	ID=Os10t0442600-01;Name=Os10t0442600-01;Locus_id=Os10g0442600;CGSNL Gene Symbol=CDC48E;CGSNL Gene Name=CELL DIVISION CONTROL 48E;Oryzabase Gene Symbol Synonym(s)=OsCDC48E%2C OsCDC48-2%2C CDC48-2;Oryzabase Gene Name Synonym(s)=cell division cycle 48E;Note=Similar to Cell division control protein 48-like protein e (Fragment).;Transcript_evidence=AK058908 (DDBJ%2C Best hit);ORF_evidence=A6MZV2 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);NIAS_FLcDNA=001-008-E02;Oryzabase=19833;TENOR=Os10t0442600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	15914701	15914724	.	+	.	Parent=Os10t0442600-01
Chr10	irgsp1_rep	CDS	15914725	15915018	.	+	0	Parent=Os10t0442600-01
Chr10	irgsp1_rep	CDS	15915367	15915660	.	+	0	Parent=Os10t0442600-01
Chr10	irgsp1_rep	three_prime_UTR	15915661	15915920	.	+	.	Parent=Os10t0442600-01
Chr10	irgsp1_rep	mRNA	15911404	15915970	.	+	.	ID=Os10t0442600-02;Name=Os10t0442600-02;Locus_id=Os10g0442600;RAP-DB Gene Symbol Synonym(s)=OsCDC48E;RAP-DB Gene Name Synonym(s)=cell division cycle 48E;CGSNL Gene Symbol=CDC48E;CGSNL Gene Name=CELL DIVISION CONTROL 48E;Oryzabase Gene Symbol Synonym(s)=OsCDC48E%2C OsCDC48-2%2C CDC48-2;Oryzabase Gene Name Synonym(s)=cell division cycle 48E;Note=AAA-ATPase family protein%2C Modulation of cellular processes%2C Control of plant survival;Transcript_evidence=MK292711 (IR64);ORF_evidence=Q7XE16;GO=Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity (GO:0016787);InterPro=Aspartate decarboxylase-like domain superfamily (IPR009010),CDC48 domain 2-like superfamily (IPR029067),P-loop containing nucleoside triphosphate hydrolase (IPR027417),AAA ATPase%2C CDC48 family (IPR005938),CDC48%2C N-terminal subdomain (IPR003338),CDC48%2C domain 2 (IPR004201),AAA+ ATPase domain (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);Manual Curation=April 5%2C 2019;Literature_PMID=30937701,26040493;Oryzabase=19833;Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737)
Chr10	irgsp1_rep	five_prime_UTR	15911404	15911548	.	+	.	Parent=Os10t0442600-02
Chr10	irgsp1_rep	CDS	15911549	15911586	.	+	0	Parent=Os10t0442600-02
Chr10	irgsp1_rep	CDS	15911687	15911849	.	+	1	Parent=Os10t0442600-02
Chr10	irgsp1_rep	CDS	15912587	15912815	.	+	0	Parent=Os10t0442600-02
Chr10	irgsp1_rep	CDS	15912945	15913711	.	+	2	Parent=Os10t0442600-02
Chr10	irgsp1_rep	CDS	15913818	15914039	.	+	0	Parent=Os10t0442600-02
Chr10	irgsp1_rep	CDS	15914129	15914200	.	+	0	Parent=Os10t0442600-02
Chr10	irgsp1_rep	CDS	15914295	15914576	.	+	0	Parent=Os10t0442600-02
Chr10	irgsp1_rep	CDS	15914659	15915018	.	+	0	Parent=Os10t0442600-02
Chr10	irgsp1_rep	CDS	15915367	15915660	.	+	0	Parent=Os10t0442600-02
Chr10	irgsp1_rep	three_prime_UTR	15915661	15915970	.	+	.	Parent=Os10t0442600-02
Chr10	irgsp1_rep	mRNA	15918244	15925942	.	+	.	ID=Os10t0442700-01;Name=Os10t0442700-01;Locus_id=Os10g0442700;Note=Similar to Protein serine/threonine kinase (Protein kinase).;Transcript_evidence=AK066106 (DDBJ%2C Best hit);ORF_evidence=A2Z7V1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013052M01;Expression=AK066106;TENOR=Os10t0442700-01;KEGG=Os10t0442700-01
Chr10	irgsp1_rep	five_prime_UTR	15918244	15918284	.	+	.	Parent=Os10t0442700-01
Chr10	irgsp1_rep	CDS	15918285	15919766	.	+	0	Parent=Os10t0442700-01
Chr10	irgsp1_rep	three_prime_UTR	15919767	15919900	.	+	.	Parent=Os10t0442700-01
Chr10	irgsp1_rep	three_prime_UTR	15920224	15920378	.	+	.	Parent=Os10t0442700-01
Chr10	irgsp1_rep	three_prime_UTR	15921222	15922395	.	+	.	Parent=Os10t0442700-01
Chr10	irgsp1_rep	three_prime_UTR	15922487	15922679	.	+	.	Parent=Os10t0442700-01
Chr10	irgsp1_rep	three_prime_UTR	15922858	15923348	.	+	.	Parent=Os10t0442700-01
Chr10	irgsp1_rep	three_prime_UTR	15925418	15925591	.	+	.	Parent=Os10t0442700-01
Chr10	irgsp1_rep	three_prime_UTR	15925670	15925942	.	+	.	Parent=Os10t0442700-01
Chr10	irgsp1_rep	mRNA	15918244	15926032	.	+	.	ID=Os10t0442700-02;Name=Os10t0442700-02;Locus_id=Os10g0442700;Note=Similar to Protein serine/threonine kinase (Protein kinase).;Transcript_evidence=AK121550 (DDBJ%2C Best hit);ORF_evidence=A2Z7V1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033033A09;Expression=AK121550;TENOR=Os10t0442700-02;KEGG=Os10t0442700-02
Chr10	irgsp1_rep	five_prime_UTR	15918244	15918284	.	+	.	Parent=Os10t0442700-02
Chr10	irgsp1_rep	CDS	15918285	15919766	.	+	0	Parent=Os10t0442700-02
Chr10	irgsp1_rep	three_prime_UTR	15919767	15920378	.	+	.	Parent=Os10t0442700-02
Chr10	irgsp1_rep	three_prime_UTR	15922058	15922395	.	+	.	Parent=Os10t0442700-02
Chr10	irgsp1_rep	three_prime_UTR	15922487	15922679	.	+	.	Parent=Os10t0442700-02
Chr10	irgsp1_rep	three_prime_UTR	15922858	15923348	.	+	.	Parent=Os10t0442700-02
Chr10	irgsp1_rep	three_prime_UTR	15925418	15925591	.	+	.	Parent=Os10t0442700-02
Chr10	irgsp1_rep	three_prime_UTR	15925670	15926032	.	+	.	Parent=Os10t0442700-02
Chr10	irgsp1_rep	mRNA	15920835	15923994	.	-	.	ID=Os10t0442800-01;Name=Os10t0442800-01;Locus_id=Os10g0442800;CGSNL Gene Symbol=RLCK301;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 301;Oryzabase Gene Symbol Synonym(s)=OsRLCK301;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 301;Note=Protein serine/threonine kinase (Protein kinase).;Transcript_evidence=AK241182 (DDBJ%2C Best hit);ORF_evidence=Q109M6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J065119D23;Oryzabase=18977;TENOR=Os10t0442800-01;KEGG=Os10t0442800-01
Chr10	irgsp1_rep	five_prime_UTR	15923860	15923994	.	-	.	Parent=Os10t0442800-01
Chr10	irgsp1_rep	CDS	15923849	15923859	.	-	0	Parent=Os10t0442800-01
Chr10	irgsp1_rep	CDS	15922852	15923317	.	-	1	Parent=Os10t0442800-01
Chr10	irgsp1_rep	CDS	15922476	15922736	.	-	0	Parent=Os10t0442800-01
Chr10	irgsp1_rep	CDS	15922236	15922355	.	-	0	Parent=Os10t0442800-01
Chr10	irgsp1_rep	CDS	15921129	15921656	.	-	0	Parent=Os10t0442800-01
Chr10	irgsp1_rep	three_prime_UTR	15920835	15921128	.	-	.	Parent=Os10t0442800-01
Chr10	irgsp1_rep	mRNA	15928796	15936732	.	+	.	ID=Os10t0442900-01;Name=Os10t0442900-01;Locus_id=Os10g0442900;RAP-DB Gene Symbol Synonym(s)=ABCG25%2C OsABCG25%2C OsWBC26;RAP-DB Gene Name Synonym(s)=ABC TRANSPORTER G FAMILY MEMBER 25%2C ABC transporter G family member 25;CGSNL Gene Symbol=ABCG25;CGSNL Gene Name=ABC TRANSPORTER G FAMILY MEMBER 25;Oryzabase Gene Symbol Synonym(s)=OsABCG25%2C OsABCG25_1%2C OsABCG25_2;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 25;Note=ABC transporter%2C White-brown complex homolog protein%2C Silicon-promoted formation of Casparian bands in the exodermis;Transcript_evidence=Inferred from literature;ORF_evidence=ABB47708.1 (GenBank);GO=Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),ABC transporter-like (IPR003439),AAA+ ATPase domain (IPR003593),ABC transporter%2C conserved site (IPR017871);Manual Curation=June 15%2C 2017;Literature_PMID=28503184,22996334;Oryzabase=12002;TENOR=Os10t0442900-00
Chr10	irgsp1_rep	CDS	15928796	15929058	.	+	0	Parent=Os10t0442900-01
Chr10	irgsp1_rep	CDS	15929169	15929242	.	+	1	Parent=Os10t0442900-01
Chr10	irgsp1_rep	CDS	15930489	15930568	.	+	2	Parent=Os10t0442900-01
Chr10	irgsp1_rep	CDS	15931353	15931398	.	+	0	Parent=Os10t0442900-01
Chr10	irgsp1_rep	CDS	15931501	15931535	.	+	2	Parent=Os10t0442900-01
Chr10	irgsp1_rep	CDS	15931918	15931938	.	+	0	Parent=Os10t0442900-01
Chr10	irgsp1_rep	CDS	15932585	15933300	.	+	0	Parent=Os10t0442900-01
Chr10	irgsp1_rep	CDS	15933684	15933980	.	+	1	Parent=Os10t0442900-01
Chr10	irgsp1_rep	CDS	15934380	15934826	.	+	1	Parent=Os10t0442900-01
Chr10	irgsp1_rep	CDS	15934905	15935053	.	+	1	Parent=Os10t0442900-01
Chr10	irgsp1_rep	CDS	15935575	15935864	.	+	2	Parent=Os10t0442900-01
Chr10	irgsp1_rep	CDS	15935941	15936065	.	+	0	Parent=Os10t0442900-01
Chr10	irgsp1_rep	CDS	15936173	15936323	.	+	1	Parent=Os10t0442900-01
Chr10	irgsp1_rep	three_prime_UTR	15936324	15936325	.	+	.	Parent=Os10t0442900-01
Chr10	irgsp1_rep	three_prime_UTR	15936452	15936732	.	+	.	Parent=Os10t0442900-01
Chr10	irgsp1_rep	mRNA	15939259	15939828	.	-	.	ID=Os10t0443000-00;Name=Os10t0443000-00;Locus_id=Os10g0443000;Note=Six-bladed beta-propeller%2C TolB-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8BH50 (UniProt);InterPro=Six-bladed beta-propeller%2C TolB-like (IPR011042);TENOR=Os10t0443000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	15939259	15939828	.	-	0	Parent=Os10t0443000-00
Chr10	irgsp1_rep	mRNA	15942044	15942538	.	-	.	ID=Os10t0443100-00;Name=Os10t0443100-00;Locus_id=Os10g0443100;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XE12 (UniProt);TENOR=Os10t0443100-00
Chr10	irgsp1_rep	CDS	15942044	15942538	.	-	0	Parent=Os10t0443100-00
Chr10	irgsp1_rep	mRNA	15946268	15950066	.	+	.	ID=Os10t0443200-01;Name=Os10t0443200-01;Locus_id=Os10g0443200;Note=Similar to translin-like protein [Oryza sativa (japonica cultivar-group)].;Transcript_evidence=AK063397 (DDBJ%2C Best hit);ORF_evidence=B6T9M5 (UniProt);GO=Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Translin (IPR002848),Translin%2C N-terminal (IPR016068),Translin%2C C-terminal (IPR016069);NIAS_FLcDNA=001-114-H10;Expression=AK063397;TENOR=Os10t0443200-01;KEGG=Os10t0443200-01
Chr10	irgsp1_rep	CDS	15946268	15946637	.	+	0	Parent=Os10t0443200-01
Chr10	irgsp1_rep	CDS	15946759	15946855	.	+	2	Parent=Os10t0443200-01
Chr10	irgsp1_rep	CDS	15946968	15947083	.	+	1	Parent=Os10t0443200-01
Chr10	irgsp1_rep	CDS	15947179	15947223	.	+	2	Parent=Os10t0443200-01
Chr10	irgsp1_rep	CDS	15947614	15947639	.	+	2	Parent=Os10t0443200-01
Chr10	irgsp1_rep	CDS	15949466	15949601	.	+	0	Parent=Os10t0443200-01
Chr10	irgsp1_rep	CDS	15949775	15949869	.	+	2	Parent=Os10t0443200-01
Chr10	irgsp1_rep	three_prime_UTR	15949870	15950066	.	+	.	Parent=Os10t0443200-01
Chr10	irgsp1_rep	mRNA	15977089	15979468	.	-	.	ID=Os10t0443400-00;Name=Os10t0443400-00;Locus_id=Os10g0443400;Note=Similar to HAT family dimerisation domain containing protein.;Transcript_evidence=tplb0053n06 (Wheat FLcDNA);ORF_evidence=Q7XE06 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Zinc finger%2C BED-type predicted (IPR003656),HAT dimerisation (IPR008906),Ribonuclease H-like (IPR012337);TENOR=Os10t0443400-00
Chr10	irgsp1_rep	CDS	15978759	15979468	.	-	0	Parent=Os10t0443400-00
Chr10	irgsp1_rep	CDS	15977089	15978661	.	-	1	Parent=Os10t0443400-00
Chr10	irgsp1_rep	mRNA	15977365	15979354	.	+	.	ID=Os10t0443600-00;Name=Os10t0443600-00;Locus_id=Os10g0443600;Note=Hypothetical protein.;Transcript_evidence=tplb0030l08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0443600-00
Chr10	irgsp1_rep	five_prime_UTR	15977365	15978385	.	+	.	Parent=Os10t0443600-00
Chr10	irgsp1_rep	CDS	15978386	15978610	.	+	0	Parent=Os10t0443600-00
Chr10	irgsp1_rep	three_prime_UTR	15978611	15978647	.	+	.	Parent=Os10t0443600-00
Chr10	irgsp1_rep	three_prime_UTR	15978743	15979354	.	+	.	Parent=Os10t0443600-00
Chr10	irgsp1_rep	mRNA	15983796	15987983	.	+	.	ID=Os10t0443800-01;Name=Os10t0443800-01;Locus_id=Os10g0443800;Note=Hypothetical conserved gene.;Transcript_evidence=AK242392 (DDBJ%2C Best hit);ORF_evidence=B9FPY2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),MYB-like (IPR017877);NIAS_FLcDNA=J080064A02;TENOR=Os10t0443800-01;KEGG=Os10t0443800-01
Chr10	irgsp1_rep	five_prime_UTR	15983796	15984075	.	+	.	Parent=Os10t0443800-01
Chr10	irgsp1_rep	CDS	15984076	15984331	.	+	0	Parent=Os10t0443800-01
Chr10	irgsp1_rep	CDS	15986165	15986260	.	+	2	Parent=Os10t0443800-01
Chr10	irgsp1_rep	CDS	15986338	15986412	.	+	2	Parent=Os10t0443800-01
Chr10	irgsp1_rep	CDS	15986494	15986561	.	+	2	Parent=Os10t0443800-01
Chr10	irgsp1_rep	CDS	15987278	15987460	.	+	0	Parent=Os10t0443800-01
Chr10	irgsp1_rep	CDS	15987566	15987622	.	+	0	Parent=Os10t0443800-01
Chr10	irgsp1_rep	CDS	15987707	15987811	.	+	0	Parent=Os10t0443800-01
Chr10	irgsp1_rep	three_prime_UTR	15987812	15987983	.	+	.	Parent=Os10t0443800-01
Chr10	irgsp1_rep	mRNA	15997619	16000815	.	+	.	ID=Os10t0444100-01;Name=Os10t0444100-01;Locus_id=Os10g0444100;Note=Homeodomain-like containing protein.;Transcript_evidence=AK071645 (DDBJ%2C Best hit);ORF_evidence=B9FPY0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J023105M22;Expression=AK071645;TENOR=Os10t0444100-01;KEGG=Os10t0444100-01
Chr10	irgsp1_rep	five_prime_UTR	15997619	15997777	.	+	.	Parent=Os10t0444100-01
Chr10	irgsp1_rep	five_prime_UTR	15997992	15998019	.	+	.	Parent=Os10t0444100-01
Chr10	irgsp1_rep	CDS	15998020	15998229	.	+	0	Parent=Os10t0444100-01
Chr10	irgsp1_rep	CDS	15999374	15999470	.	+	0	Parent=Os10t0444100-01
Chr10	irgsp1_rep	CDS	15999546	15999620	.	+	2	Parent=Os10t0444100-01
Chr10	irgsp1_rep	CDS	15999703	15999803	.	+	2	Parent=Os10t0444100-01
Chr10	irgsp1_rep	CDS	16000027	16000209	.	+	0	Parent=Os10t0444100-01
Chr10	irgsp1_rep	CDS	16000309	16000365	.	+	0	Parent=Os10t0444100-01
Chr10	irgsp1_rep	CDS	16000451	16000552	.	+	0	Parent=Os10t0444100-01
Chr10	irgsp1_rep	three_prime_UTR	16000553	16000815	.	+	.	Parent=Os10t0444100-01
Chr10	irgsp1_rep	mRNA	16016829	16021344	.	+	.	ID=Os10t0444400-01;Name=Os10t0444400-01;Locus_id=Os10g0444400;Note=Similar to Appr-1-p processing enzyme family protein.;Transcript_evidence=AK121209 (DDBJ%2C Best hit);ORF_evidence=B6UEI4 (UniProt);InterPro=Cellular retinaldehyde-binding/triple function%2C C-terminal (IPR001251),Appr-1-p processing (IPR002589);NIAS_FLcDNA=J023088J18;TENOR=Os10t0444400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	16016829	16016905	.	+	.	Parent=Os10t0444400-01
Chr10	irgsp1_rep	CDS	16016906	16017316	.	+	0	Parent=Os10t0444400-01
Chr10	irgsp1_rep	CDS	16017401	16017478	.	+	0	Parent=Os10t0444400-01
Chr10	irgsp1_rep	CDS	16017565	16017620	.	+	0	Parent=Os10t0444400-01
Chr10	irgsp1_rep	CDS	16018100	16018219	.	+	1	Parent=Os10t0444400-01
Chr10	irgsp1_rep	CDS	16018356	16018426	.	+	1	Parent=Os10t0444400-01
Chr10	irgsp1_rep	CDS	16018769	16018862	.	+	2	Parent=Os10t0444400-01
Chr10	irgsp1_rep	CDS	16018938	16019144	.	+	1	Parent=Os10t0444400-01
Chr10	irgsp1_rep	CDS	16019572	16019823	.	+	1	Parent=Os10t0444400-01
Chr10	irgsp1_rep	CDS	16019947	16020055	.	+	1	Parent=Os10t0444400-01
Chr10	irgsp1_rep	CDS	16020278	16020345	.	+	0	Parent=Os10t0444400-01
Chr10	irgsp1_rep	CDS	16020444	16020513	.	+	1	Parent=Os10t0444400-01
Chr10	irgsp1_rep	CDS	16020595	16020669	.	+	0	Parent=Os10t0444400-01
Chr10	irgsp1_rep	CDS	16020766	16020857	.	+	0	Parent=Os10t0444400-01
Chr10	irgsp1_rep	CDS	16020945	16021026	.	+	1	Parent=Os10t0444400-01
Chr10	irgsp1_rep	three_prime_UTR	16021027	16021344	.	+	.	Parent=Os10t0444400-01
Chr10	irgsp1_rep	mRNA	16018097	16021243	.	-	.	ID=Os10t0444450-00;Name=Os10t0444450-00;Locus_id=Os10g0444450;Note=Non-protein coding transcript.;Transcript_evidence=tplb0060k02 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os10t0444450-00
Chr10	irgsp1_rep	exon	16020939	16021243	.	-	.	Parent=Os10t0444450-00
Chr10	irgsp1_rep	exon	16020764	16020851	.	-	.	Parent=Os10t0444450-00
Chr10	irgsp1_rep	exon	16020587	16020667	.	-	.	Parent=Os10t0444450-00
Chr10	irgsp1_rep	exon	16020445	16020507	.	-	.	Parent=Os10t0444450-00
Chr10	irgsp1_rep	exon	16020288	16020348	.	-	.	Parent=Os10t0444450-00
Chr10	irgsp1_rep	exon	16019947	16020064	.	-	.	Parent=Os10t0444450-00
Chr10	irgsp1_rep	exon	16019553	16019823	.	-	.	Parent=Os10t0444450-00
Chr10	irgsp1_rep	exon	16018949	16019125	.	-	.	Parent=Os10t0444450-00
Chr10	irgsp1_rep	exon	16018773	16018871	.	-	.	Parent=Os10t0444450-00
Chr10	irgsp1_rep	exon	16018354	16018433	.	-	.	Parent=Os10t0444450-00
Chr10	irgsp1_rep	exon	16018097	16018217	.	-	.	Parent=Os10t0444450-00
Chr10	irgsp1_rep	mRNA	16022592	16024505	.	-	.	ID=Os10t0444500-00;Name=Os10t0444500-00;Locus_id=Os10g0444500;Note=Similar to Selenium binding protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2L3D0 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);TENOR=Os10t0444500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	16022592	16024505	.	-	0	Parent=Os10t0444500-00
Chr10	irgsp1_rep	mRNA	16027840	16029430	.	-	.	ID=Os10t0444566-00;Name=Os10t0444566-00;Locus_id=Os10g0444566;Note=Hypothetical gene.;Transcript_evidence=BT086156 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0444566-00
Chr10	irgsp1_rep	five_prime_UTR	16029142	16029430	.	-	.	Parent=Os10t0444566-00
Chr10	irgsp1_rep	CDS	16029100	16029141	.	-	0	Parent=Os10t0444566-00
Chr10	irgsp1_rep	CDS	16027840	16028809	.	-	0	Parent=Os10t0444566-00
Chr10	irgsp1_rep	mRNA	16027859	16029439	.	+	.	ID=Os10t0444600-01;Name=Os10t0444600-01;Locus_id=Os10g0444600;RAP-DB Gene Symbol Synonym(s)=OsPHT1%3B3;RAP-DB Gene Name Synonym(s)=Os Phosphate Transporter-1%3B3;CGSNL Gene Symbol=PT3;CGSNL Gene Name=PHOSPHATE TRANSPORTER 3;Oryzabase Gene Symbol Synonym(s)=OsPT3%2C PHT1-3%2C OsPht1%3B3%2C OjPT1%2C PHT1%3B3;Oryzabase Gene Name Synonym(s)=Probable inorganic phosphate transporter 1-3;Note=Pi transporter%2C Mediation of Pi uptake%2C translocation%2C and remobilization;Transcript_evidence=AF239619 (truncted),Inferred from literature;ORF_evidence=Q7XDZ7;GO=Biological Process: phosphate ion transport (GO:0006817),Biological Process: transmembrane transport (GO:0055085),Molecular Function: inorganic phosphate transmembrane transporter activity (GO:0005315),Molecular Function: transmembrane transporter activity (GO:0022857),Cellular Component: integral component of membrane (GO:0016021);InterPro=MFS transporter superfamily (IPR036259),Major facilitator%2C  sugar transporter-like (IPR005828),Phosphate permease (IPR004738),Major facilitator superfamily domain (IPR020846);Manual Curation=February 6%2C 2019;Literature_PMID=30567970,12271140;Oryzabase=8218;TENOR=Os10t0444600-00;Subcellular location=plasma membrane (GO:0005886)
Chr10	irgsp1_rep	CDS	16027859	16029439	.	+	0	Parent=Os10t0444600-01
Chr10	irgsp1_rep	mRNA	16036156	16038231	.	-	.	ID=Os10t0444700-01;Name=Os10t0444700-01;Locus_id=Os10g0444700;RAP-DB Gene Symbol Synonym(s)=PT8%2C OsPT8%2C PHT1-8%2C OsPht1%3B8;RAP-DB Gene Name Synonym(s)=PHOSPHATE TRANSPORTER 8%2C Probable inorganic phosphate transporter 1-8;CGSNL Gene Symbol=PT8;CGSNL Gene Name=PHOSPHATE TRANSPORTER 8;Oryzabase Gene Symbol Synonym(s)=OsPT8%2C PHT1-8%2C OsPht1%3B8%2C Pht1%3B8;Oryzabase Gene Name Synonym(s)=Probable inorganic phosphate transporter 1-8;Note=Phosphate transporter%2C Pi homeostasis;Transcript_evidence=AF536968,AK101170;ORF_evidence=Q8H6G8;GO=Biological Process: phosphate ion transport (GO:0006817),Biological Process: transmembrane transport (GO:0055085),Molecular Function: inorganic phosphate transmembrane transporter activity (GO:0005315),Molecular Function: transmembrane transporter activity (GO:0022857),Cellular Component: integral component of membrane (GO:0016021);InterPro=General substrate transporter (IPR005828),Phosphate permease (IPR004738),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J033028K24;Manual Curation=May 28%2C 2015;Literature_PMID=21502185;Oryzabase=8223;Expression=AK101170;TENOR=Os10t0444700-01;KEGG=Os10t0444700-01
Chr10	irgsp1_rep	five_prime_UTR	16038033	16038231	.	-	.	Parent=Os10t0444700-01
Chr10	irgsp1_rep	CDS	16036407	16038032	.	-	0	Parent=Os10t0444700-01
Chr10	irgsp1_rep	three_prime_UTR	16036156	16036406	.	-	.	Parent=Os10t0444700-01
Chr10	irgsp1_rep	mRNA	16035405	16038107	.	-	.	ID=Os10t0444700-02;Name=Os10t0444700-02;Locus_id=Os10g0444700;CGSNL Gene Symbol=PT8;CGSNL Gene Name=PHOSPHATE TRANSPORTER 8;Oryzabase Gene Symbol Synonym(s)=OsPT8%2C PHT1-8%2C OsPht1%3B8%2C Pht1%3B8;Oryzabase Gene Name Synonym(s)=Probable inorganic phosphate transporter 1-8;Note=Similar to Phosphate transporter 6.;Transcript_evidence=AK069054 (DDBJ%2C Best hit);ORF_evidence=Q84JQ1 (UniProt);GO=Biological Process: phosphate ion transport (GO:0006817),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: inorganic phosphate transmembrane transporter activity (GO:0005315),Molecular Function: transmembrane transporter activity (GO:0022857);InterPro=Phosphate permease (IPR004738),General substrate transporter (IPR005828),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J023004G17;Oryzabase=8223;Expression=AK069054;TENOR=Os10t0444700-02;KEGG=Os10t0444700-02
Chr10	irgsp1_rep	five_prime_UTR	16038033	16038107	.	-	.	Parent=Os10t0444700-02
Chr10	irgsp1_rep	CDS	16036407	16038032	.	-	0	Parent=Os10t0444700-02
Chr10	irgsp1_rep	three_prime_UTR	16036383	16036406	.	-	.	Parent=Os10t0444700-02
Chr10	irgsp1_rep	three_prime_UTR	16035405	16035997	.	-	.	Parent=Os10t0444700-02
Chr10	irgsp1_rep	mRNA	16036455	16038061	.	+	.	ID=Os10t0444850-00;Name=Os10t0444850-00;Locus_id=Os10g0444850;Note=Hypothetical gene.;Transcript_evidence=BT086156 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0444850-00;KEGG=Os10t0444850-00
Chr10	irgsp1_rep	five_prime_UTR	16036455	16036533	.	+	.	Parent=Os10t0444850-00
Chr10	irgsp1_rep	CDS	16036534	16036782	.	+	0	Parent=Os10t0444850-00
Chr10	irgsp1_rep	CDS	16037073	16038038	.	+	0	Parent=Os10t0444850-00
Chr10	irgsp1_rep	three_prime_UTR	16038039	16038061	.	+	.	Parent=Os10t0444850-00
Chr10	irgsp1_rep	mRNA	16084478	16086689	.	-	.	ID=Os10t0445400-01;Name=Os10t0445400-01;Locus_id=Os10g0445400;RAP-DB Gene Symbol Synonym(s)=OsHCI1;RAP-DB Gene Name Synonym(s)=heat and cold induced 1;Oryzabase Gene Symbol Synonym(s)=OsHCI1%2C E3UL;Oryzabase Gene Name Synonym(s)=heat and cold induced 1%2C RING domain-containing E3 ubiquitin ligase;Note=RING finger E3 ligase%2C Mediation of nuclear-cytoplasmic trafficking of nuclear substrate proteins via monoubiquitination%2C Regulation of heat-generated signal;Transcript_evidence=AK067013;ORF_evidence=Q337S3;InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841);NIAS_FLcDNA=J013093E22;Manual Curation=July 28%2C 2020;Literature_PMID=23698632;Oryzabase=15297;Expression=AK067013;TENOR=Os10t0445400-01;KEGG=Os10t0445400-01;Subcellular location=Golgi apparatus (GO:0005794), nucleus (GO:0005634) [heat stress]
Chr10	irgsp1_rep	five_prime_UTR	16086399	16086689	.	-	.	Parent=Os10t0445400-01
Chr10	irgsp1_rep	CDS	16086162	16086398	.	-	0	Parent=Os10t0445400-01
Chr10	irgsp1_rep	CDS	16085975	16086041	.	-	0	Parent=Os10t0445400-01
Chr10	irgsp1_rep	CDS	16085655	16085877	.	-	2	Parent=Os10t0445400-01
Chr10	irgsp1_rep	CDS	16084637	16084850	.	-	1	Parent=Os10t0445400-01
Chr10	irgsp1_rep	three_prime_UTR	16084478	16084636	.	-	.	Parent=Os10t0445400-01
Chr10	irgsp1_rep	mRNA	16092694	16096748	.	+	.	ID=Os10t0445500-01;Name=Os10t0445500-01;Locus_id=Os10g0445500;Oryzabase Gene Name Synonym(s)=HR-like lesion-inducer family protein;Note=HR-like lesion-inducer family protein.;Transcript_evidence=AK073158 (DDBJ%2C Best hit),AK059279 (DDBJ%2C Best hit);ORF_evidence=B0FFN1 (UniProt);InterPro=HR-like lesion-inducer (IPR008637);NIAS_FLcDNA=J033003G06,001-025-C10;Oryzabase=22095;Expression=AK073158;TENOR=Os10t0445500-01;KEGG=Os10t0445500-01
Chr10	irgsp1_rep	five_prime_UTR	16092694	16092772	.	+	.	Parent=Os10t0445500-01
Chr10	irgsp1_rep	CDS	16092773	16092840	.	+	0	Parent=Os10t0445500-01
Chr10	irgsp1_rep	CDS	16094588	16094702	.	+	1	Parent=Os10t0445500-01
Chr10	irgsp1_rep	CDS	16094822	16094911	.	+	0	Parent=Os10t0445500-01
Chr10	irgsp1_rep	CDS	16096101	16096199	.	+	0	Parent=Os10t0445500-01
Chr10	irgsp1_rep	CDS	16096320	16096424	.	+	0	Parent=Os10t0445500-01
Chr10	irgsp1_rep	three_prime_UTR	16096425	16096748	.	+	.	Parent=Os10t0445500-01
Chr10	irgsp1_rep	mRNA	16096849	16098550	.	-	.	ID=Os10t0445600-01;Name=Os10t0445600-01;Locus_id=Os10g0445600;Note=Conserved hypothetical protein.;Transcript_evidence=AK120673 (DDBJ%2C Best hit);ORF_evidence=A2Z7X6 (UniProt);NIAS_FLcDNA=J013161G16;Expression=AK120673;TENOR=Os10t0445600-01;KEGG=Os10t0445600-01
Chr10	irgsp1_rep	five_prime_UTR	16098501	16098550	.	-	.	Parent=Os10t0445600-01
Chr10	irgsp1_rep	CDS	16097091	16098500	.	-	0	Parent=Os10t0445600-01
Chr10	irgsp1_rep	three_prime_UTR	16096849	16097090	.	-	.	Parent=Os10t0445600-01
Chr10	irgsp1_rep	mRNA	16106220	16107411	.	+	.	ID=Os10t0445900-01;Name=Os10t0445900-01;Locus_id=Os10g0445900;Note=Conserved hypothetical protein.;Transcript_evidence=AK109236 (DDBJ%2C Best hit);ORF_evidence=Q7XDY8 (UniProt);NIAS_FLcDNA=002-156-F08;TENOR=Os10t0445900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	16106220	16106295	.	+	.	Parent=Os10t0445900-01
Chr10	irgsp1_rep	CDS	16106296	16106350	.	+	0	Parent=Os10t0445900-01
Chr10	irgsp1_rep	CDS	16106936	16107138	.	+	2	Parent=Os10t0445900-01
Chr10	irgsp1_rep	three_prime_UTR	16107139	16107411	.	+	.	Parent=Os10t0445900-01
Chr10	irgsp1_rep	mRNA	16109992	16112105	.	-	.	ID=Os10t0446100-01;Name=Os10t0446100-01;Locus_id=Os10g0446100;Note=WRC domain containing protein.;Transcript_evidence=AK069924 (DDBJ%2C Best hit);ORF_evidence=A2Z7Y0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WRC (IPR014977);NIAS_FLcDNA=J023035J22;Expression=AK069924;TENOR=Os10t0446100-01;KEGG=Os10t0446100-01
Chr10	irgsp1_rep	five_prime_UTR	16111958	16112105	.	-	.	Parent=Os10t0446100-01
Chr10	irgsp1_rep	CDS	16111679	16111957	.	-	0	Parent=Os10t0446100-01
Chr10	irgsp1_rep	CDS	16110228	16111250	.	-	0	Parent=Os10t0446100-01
Chr10	irgsp1_rep	three_prime_UTR	16109992	16110227	.	-	.	Parent=Os10t0446100-01
Chr10	irgsp1_rep	mRNA	16121272	16130919	.	+	.	ID=Os10t0446200-01;Name=Os10t0446200-01;Locus_id=Os10g0446200;Note=Hypothetical conserved gene.;Transcript_evidence=AK121939 (DDBJ%2C Best hit);ORF_evidence=B8BH61 (UniProt);InterPro=EGF-like region%2C conserved site (IPR013032),Protein of unknown function DUF3522 (IPR021910);NIAS_FLcDNA=J033107D06;Expression=AK121939;TENOR=Os10t0446200-01;KEGG=Os10t0446200-01
Chr10	irgsp1_rep	five_prime_UTR	16121272	16121406	.	+	.	Parent=Os10t0446200-01
Chr10	irgsp1_rep	CDS	16121407	16121575	.	+	0	Parent=Os10t0446200-01
Chr10	irgsp1_rep	CDS	16122098	16122156	.	+	2	Parent=Os10t0446200-01
Chr10	irgsp1_rep	CDS	16123049	16123157	.	+	0	Parent=Os10t0446200-01
Chr10	irgsp1_rep	CDS	16123608	16123717	.	+	2	Parent=Os10t0446200-01
Chr10	irgsp1_rep	CDS	16124142	16124210	.	+	0	Parent=Os10t0446200-01
Chr10	irgsp1_rep	CDS	16124324	16125013	.	+	0	Parent=Os10t0446200-01
Chr10	irgsp1_rep	CDS	16125278	16125795	.	+	0	Parent=Os10t0446200-01
Chr10	irgsp1_rep	CDS	16125891	16125955	.	+	1	Parent=Os10t0446200-01
Chr10	irgsp1_rep	CDS	16127176	16127255	.	+	2	Parent=Os10t0446200-01
Chr10	irgsp1_rep	CDS	16128060	16128164	.	+	0	Parent=Os10t0446200-01
Chr10	irgsp1_rep	CDS	16129195	16129334	.	+	0	Parent=Os10t0446200-01
Chr10	irgsp1_rep	CDS	16129423	16129551	.	+	1	Parent=Os10t0446200-01
Chr10	irgsp1_rep	CDS	16130069	16130221	.	+	1	Parent=Os10t0446200-01
Chr10	irgsp1_rep	CDS	16130352	16130493	.	+	1	Parent=Os10t0446200-01
Chr10	irgsp1_rep	three_prime_UTR	16130494	16130919	.	+	.	Parent=Os10t0446200-01
Chr10	irgsp1_rep	mRNA	16139900	16144704	.	+	.	ID=Os10t0446400-01;Name=Os10t0446400-01;Locus_id=Os10g0446400;Note=AT-rich interaction region domain containing protein.;Transcript_evidence=AK108348 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Cellular Component: intracellular (GO:0005622),Molecular Function: DNA binding (GO:0003677);InterPro=ARID/BRIGHT DNA-binding domain (IPR001606);NIAS_FLcDNA=002-142-B09;Expression=AK108348;TENOR=Os10t0446400-01;KEGG=Os10t0446400-01
Chr10	irgsp1_rep	CDS	16139900	16140877	.	+	0	Parent=Os10t0446400-01
Chr10	irgsp1_rep	CDS	16144483	16144491	.	+	0	Parent=Os10t0446400-01
Chr10	irgsp1_rep	three_prime_UTR	16144492	16144704	.	+	.	Parent=Os10t0446400-01
Chr10	irgsp1_rep	mRNA	16140775	16149934	.	+	.	ID=Os10t0446400-02;Name=Os10t0446400-02;Locus_id=Os10g0446400;Note=SANT domain%2C DNA binding domain containing protein.;Transcript_evidence=AK059905 (DDBJ%2C Best hit);ORF_evidence=B8BH62 (UniProt);GO=Molecular Function: DNA binding (GO:0003677);InterPro=SANT domain%2C DNA binding (IPR001005);NIAS_FLcDNA=006-208-H04;TENOR=Os10t0446400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	16140775	16140778	.	+	.	Parent=Os10t0446400-02
Chr10	irgsp1_rep	CDS	16140779	16140877	.	+	0	Parent=Os10t0446400-02
Chr10	irgsp1_rep	CDS	16149018	16149707	.	+	0	Parent=Os10t0446400-02
Chr10	irgsp1_rep	three_prime_UTR	16149708	16149934	.	+	.	Parent=Os10t0446400-02
Chr10	irgsp1_rep	mRNA	16151402	16160073	.	-	.	ID=Os10t0446600-01;Name=Os10t0446600-01;Locus_id=Os10g0446600;Note=Conserved hypothetical protein.;Transcript_evidence=AK111774 (DDBJ%2C Best hit);ORF_evidence=NP_001173767.1 (RefSeq);NIAS_FLcDNA=J023072J21;Expression=AK111774;TENOR=Os10t0446600-01;KEGG=Os10t0446600-01
Chr10	irgsp1_rep	five_prime_UTR	16159264	16160073	.	-	.	Parent=Os10t0446600-01
Chr10	irgsp1_rep	CDS	16159171	16159263	.	-	0	Parent=Os10t0446600-01
Chr10	irgsp1_rep	CDS	16158788	16158872	.	-	0	Parent=Os10t0446600-01
Chr10	irgsp1_rep	CDS	16158559	16158693	.	-	2	Parent=Os10t0446600-01
Chr10	irgsp1_rep	CDS	16158431	16158453	.	-	2	Parent=Os10t0446600-01
Chr10	irgsp1_rep	three_prime_UTR	16158348	16158430	.	-	.	Parent=Os10t0446600-01
Chr10	irgsp1_rep	three_prime_UTR	16157435	16157501	.	-	.	Parent=Os10t0446600-01
Chr10	irgsp1_rep	three_prime_UTR	16157050	16157152	.	-	.	Parent=Os10t0446600-01
Chr10	irgsp1_rep	three_prime_UTR	16156203	16156295	.	-	.	Parent=Os10t0446600-01
Chr10	irgsp1_rep	three_prime_UTR	16153379	16154562	.	-	.	Parent=Os10t0446600-01
Chr10	irgsp1_rep	three_prime_UTR	16153205	16153302	.	-	.	Parent=Os10t0446600-01
Chr10	irgsp1_rep	three_prime_UTR	16151402	16151782	.	-	.	Parent=Os10t0446600-01
Chr10	irgsp1_rep	mRNA	16154710	16159947	.	-	.	ID=Os10t0446600-02;Name=Os10t0446600-02;Locus_id=Os10g0446600;Note=Conserved hypothetical protein.;Transcript_evidence=AK101643 (DDBJ%2C Best hit);ORF_evidence=NP_001173767.1 (RefSeq);NIAS_FLcDNA=J033055N03;Expression=AK101643;TENOR=Os10t0446600-02;KEGG=Os10t0446600-02
Chr10	irgsp1_rep	five_prime_UTR	16159264	16159947	.	-	.	Parent=Os10t0446600-02
Chr10	irgsp1_rep	CDS	16159171	16159263	.	-	0	Parent=Os10t0446600-02
Chr10	irgsp1_rep	CDS	16158788	16158872	.	-	0	Parent=Os10t0446600-02
Chr10	irgsp1_rep	CDS	16158559	16158693	.	-	2	Parent=Os10t0446600-02
Chr10	irgsp1_rep	CDS	16158431	16158453	.	-	2	Parent=Os10t0446600-02
Chr10	irgsp1_rep	three_prime_UTR	16158348	16158430	.	-	.	Parent=Os10t0446600-02
Chr10	irgsp1_rep	three_prime_UTR	16157435	16157501	.	-	.	Parent=Os10t0446600-02
Chr10	irgsp1_rep	three_prime_UTR	16157050	16157152	.	-	.	Parent=Os10t0446600-02
Chr10	irgsp1_rep	three_prime_UTR	16154710	16156295	.	-	.	Parent=Os10t0446600-02
Chr10	irgsp1_rep	mRNA	16166492	16167904	.	-	.	ID=Os10t0446800-01;Name=Os10t0446800-01;Locus_id=Os10g0446800;Note=Similar to predicted protein.;Transcript_evidence=AK061412 (DDBJ%2C Best hit);ORF_evidence=Q69LL0 (UniProt);NIAS_FLcDNA=006-306-C10;Expression=AK061412;TENOR=Os10t0446800-01;KEGG=Os10t0446800-01
Chr10	irgsp1_rep	five_prime_UTR	16167396	16167904	.	-	.	Parent=Os10t0446800-01
Chr10	irgsp1_rep	CDS	16167162	16167395	.	-	0	Parent=Os10t0446800-01
Chr10	irgsp1_rep	CDS	16166930	16167004	.	-	0	Parent=Os10t0446800-01
Chr10	irgsp1_rep	CDS	16166610	16166732	.	-	0	Parent=Os10t0446800-01
Chr10	irgsp1_rep	three_prime_UTR	16166492	16166609	.	-	.	Parent=Os10t0446800-01
Chr10	irgsp1_rep	mRNA	16160566	16167901	.	-	.	ID=Os10t0446800-02;Name=Os10t0446800-02;Locus_id=Os10g0446800;Note=Acetohydroxy acid isomeroreductase domain containing protein.;Transcript_evidence=AK120099 (DDBJ%2C Best hit);ORF_evidence=NP_001063259.1 (RefSeq);GO=Biological Process: cellular amino acid biosynthetic process (GO:0008652),Biological Process: branched chain family amino acid biosynthetic process (GO:0009082),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ketol-acid reductoisomerase activity (GO:0004455),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Acetohydroxy acid isomeroreductase (IPR013023),Acetohydroxy acid isomeroreductase%2C catalytic (IPR013116),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013022F17;TENOR=Os10t0446800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	16167162	16167901	.	-	.	Parent=Os10t0446800-02
Chr10	irgsp1_rep	five_prime_UTR	16165303	16167004	.	-	.	Parent=Os10t0446800-02
Chr10	irgsp1_rep	five_prime_UTR	16163747	16163905	.	-	.	Parent=Os10t0446800-02
Chr10	irgsp1_rep	CDS	16163564	16163746	.	-	0	Parent=Os10t0446800-02
Chr10	irgsp1_rep	CDS	16163239	16163304	.	-	0	Parent=Os10t0446800-02
Chr10	irgsp1_rep	CDS	16162548	16162595	.	-	0	Parent=Os10t0446800-02
Chr10	irgsp1_rep	three_prime_UTR	16162415	16162547	.	-	.	Parent=Os10t0446800-02
Chr10	irgsp1_rep	three_prime_UTR	16162254	16162319	.	-	.	Parent=Os10t0446800-02
Chr10	irgsp1_rep	three_prime_UTR	16160566	16161775	.	-	.	Parent=Os10t0446800-02
Chr10	irgsp1_rep	mRNA	16166609	16167894	.	-	.	ID=Os10t0446800-03;Name=Os10t0446800-03;Locus_id=Os10g0446800;Note=Conserved hypothetical protein.;Transcript_evidence=AK099349 (DDBJ%2C Best hit);ORF_evidence=Q69LL0 (UniProt);NIAS_FLcDNA=J033025E10;Expression=AK099349;TENOR=Os10t0446800-03;KEGG=Os10t0446800-03
Chr10	irgsp1_rep	five_prime_UTR	16167396	16167894	.	-	.	Parent=Os10t0446800-03
Chr10	irgsp1_rep	CDS	16167162	16167395	.	-	0	Parent=Os10t0446800-03
Chr10	irgsp1_rep	CDS	16166843	16167004	.	-	0	Parent=Os10t0446800-03
Chr10	irgsp1_rep	three_prime_UTR	16166609	16166842	.	-	.	Parent=Os10t0446800-03
Chr10	irgsp1_rep	mRNA	16180835	16184929	.	+	.	ID=Os10t0447100-01;Name=Os10t0447100-01;Locus_id=Os10g0447100;CGSNL Gene Symbol=UBC10;CGSNL Gene Name=UBIQUITIN-CONJUGATING ENZYME 10;Oryzabase Gene Symbol Synonym(s)=OsUBC10;Oryzabase Gene Name Synonym(s)=Ubiquitin-conjugating enzyme 10;Note=Similar to Ubiquitin-conjugating enzyme E2-21 kDa 2 (EC 6.3.2.19) (Ubiquitin- protein ligase 5) (Ubiquitin carrier protein 5).;Transcript_evidence=AK066993 (DDBJ%2C Best hit);ORF_evidence=Q337R4 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135),Ubiquitin-conjugating enzyme%2C active site (IPR023313);NIAS_FLcDNA=J013091F02;Oryzabase=19557;Expression=AK066993;TENOR=Os10t0447100-01;KEGG=Os10t0447100-01 (EC:6.3.2.19)
Chr10	irgsp1_rep	five_prime_UTR	16180835	16181038	.	+	.	Parent=Os10t0447100-01
Chr10	irgsp1_rep	CDS	16181039	16181082	.	+	0	Parent=Os10t0447100-01
Chr10	irgsp1_rep	CDS	16181264	16181343	.	+	1	Parent=Os10t0447100-01
Chr10	irgsp1_rep	CDS	16181656	16181770	.	+	2	Parent=Os10t0447100-01
Chr10	irgsp1_rep	CDS	16181864	16181916	.	+	1	Parent=Os10t0447100-01
Chr10	irgsp1_rep	CDS	16182016	16182158	.	+	2	Parent=Os10t0447100-01
Chr10	irgsp1_rep	three_prime_UTR	16182159	16184929	.	+	.	Parent=Os10t0447100-01
Chr10	irgsp1_rep	mRNA	16180867	16182129	.	+	.	ID=Os10t0447100-02;Name=Os10t0447100-02;Locus_id=Os10g0447100;CGSNL Gene Symbol=UBC10;CGSNL Gene Name=UBIQUITIN-CONJUGATING ENZYME 10;Oryzabase Gene Symbol Synonym(s)=OsUBC10;Oryzabase Gene Name Synonym(s)=Ubiquitin-conjugating enzyme 10;Note=Similar to Ubiquitin carrier protein.;Transcript_evidence=AK120481 (DDBJ%2C Best hit);ORF_evidence=Q337R4 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135),Ubiquitin-conjugating enzyme%2C active site (IPR023313);NIAS_FLcDNA=J013112B17;Oryzabase=19557;TENOR=Os10t0447100-02
Chr10	irgsp1_rep	five_prime_UTR	16180867	16181038	.	+	.	Parent=Os10t0447100-02
Chr10	irgsp1_rep	CDS	16181039	16181082	.	+	0	Parent=Os10t0447100-02
Chr10	irgsp1_rep	CDS	16181264	16181343	.	+	1	Parent=Os10t0447100-02
Chr10	irgsp1_rep	CDS	16181656	16181770	.	+	2	Parent=Os10t0447100-02
Chr10	irgsp1_rep	CDS	16181864	16181916	.	+	1	Parent=Os10t0447100-02
Chr10	irgsp1_rep	CDS	16182016	16182129	.	+	2	Parent=Os10t0447100-02
Chr10	irgsp1_rep	mRNA	16199222	16200871	.	+	.	ID=Os10t0447300-00;Name=Os10t0447300-00;Locus_id=Os10g0447300;Note=Peptidase A1 domain containing protein.;Transcript_evidence=BT018721 (DDBJ);ORF_evidence=NP_001042193.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);TENOR=Os10t0447300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	16199222	16199256	.	+	.	Parent=Os10t0447300-00
Chr10	irgsp1_rep	CDS	16199257	16199739	.	+	0	Parent=Os10t0447300-00
Chr10	irgsp1_rep	CDS	16200191	16200871	.	+	0	Parent=Os10t0447300-00
Chr10	irgsp1_rep	mRNA	16199875	16200854	.	-	.	ID=Os10t0447400-01;Name=Os10t0447400-01;Locus_id=Os10g0447400;Note=Conserved hypothetical protein.;Transcript_evidence=AK066983 (DDBJ%2C Best hit);ORF_evidence=B8AC23 (UniProt);NIAS_FLcDNA=J013093E11;Expression=AK066983;TENOR=Os10t0447400-01;KEGG=Os10t0447400-01
Chr10	irgsp1_rep	five_prime_UTR	16200840	16200854	.	-	.	Parent=Os10t0447400-01
Chr10	irgsp1_rep	CDS	16200120	16200839	.	-	0	Parent=Os10t0447400-01
Chr10	irgsp1_rep	three_prime_UTR	16199875	16200119	.	-	.	Parent=Os10t0447400-01
Chr10	irgsp1_rep	mRNA	16201250	16207856	.	+	.	ID=Os10t0447600-01;Name=Os10t0447600-01;Locus_id=Os10g0447600;CGSNL Gene Symbol=MTA4;CGSNL Gene Name=MRNA ADENOSINE METHYLASE 4;Oryzabase Gene Symbol Synonym(s)=OsMTA4;Oryzabase Gene Name Synonym(s)=mRNA adenosine methylase 4;Note=MT-A70 family protein.;Transcript_evidence=AK068843 (DDBJ%2C Best hit);ORF_evidence=B9G604 (UniProt);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Biological Process: methylation (GO:0032259),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: methyltransferase activity (GO:0008168);InterPro=DNA methylase%2C N-6 adenine-specific%2C conserved site (IPR002052),MT-A70 (IPR007757);NIAS_FLcDNA=J013169F09;Oryzabase=23095;Expression=AK068843;TENOR=Os10t0447600-01;KEGG=Os10t0447600-01
Chr10	irgsp1_rep	five_prime_UTR	16201250	16201511	.	+	.	Parent=Os10t0447600-01
Chr10	irgsp1_rep	five_prime_UTR	16202244	16202307	.	+	.	Parent=Os10t0447600-01
Chr10	irgsp1_rep	CDS	16202308	16204593	.	+	0	Parent=Os10t0447600-01
Chr10	irgsp1_rep	CDS	16204690	16204773	.	+	0	Parent=Os10t0447600-01
Chr10	irgsp1_rep	CDS	16205398	16205502	.	+	0	Parent=Os10t0447600-01
Chr10	irgsp1_rep	CDS	16205586	16205694	.	+	0	Parent=Os10t0447600-01
Chr10	irgsp1_rep	CDS	16207203	16207354	.	+	2	Parent=Os10t0447600-01
Chr10	irgsp1_rep	CDS	16207444	16207749	.	+	0	Parent=Os10t0447600-01
Chr10	irgsp1_rep	three_prime_UTR	16207750	16207856	.	+	.	Parent=Os10t0447600-01
Chr10	irgsp1_rep	mRNA	16225413	16238841	.	+	.	ID=Os10t0447900-01;Name=Os10t0447900-01;Locus_id=Os10g0447900;Oryzabase Gene Symbol Synonym(s)=SIET5;Oryzabase Gene Name Synonym(s)=silicon efflux transporter 5%2C Si efflux transporter 5;Note=Similar to Citrate transporter family protein.;Transcript_evidence=AK072242 (DDBJ%2C Best hit);ORF_evidence=B6SSI8 (UniProt);GO=Biological Process: citrate transport (GO:0015746),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: citrate transmembrane transporter activity (GO:0015137);InterPro=Divalent ion symporter (IPR004680);NIAS_FLcDNA=J013169G24;Oryzabase=19962;TENOR=Os10t0447900-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	16225413	16225644	.	+	.	Parent=Os10t0447900-01
Chr10	irgsp1_rep	five_prime_UTR	16235587	16235659	.	+	.	Parent=Os10t0447900-01
Chr10	irgsp1_rep	CDS	16235660	16236904	.	+	0	Parent=Os10t0447900-01
Chr10	irgsp1_rep	CDS	16237248	16237437	.	+	0	Parent=Os10t0447900-01
Chr10	irgsp1_rep	CDS	16238071	16238339	.	+	2	Parent=Os10t0447900-01
Chr10	irgsp1_rep	three_prime_UTR	16238340	16238841	.	+	.	Parent=Os10t0447900-01
Chr10	irgsp1_rep	mRNA	16235568	16238393	.	-	.	ID=Os10t0447950-00;Name=Os10t0447950-00;Locus_id=Os10g0447950;Note=Hypothetical protein.;Transcript_evidence=tplb0042g05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0447950-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	16238068	16238393	.	-	.	Parent=Os10t0447950-00
Chr10	irgsp1_rep	five_prime_UTR	16237257	16237434	.	-	.	Parent=Os10t0447950-00
Chr10	irgsp1_rep	five_prime_UTR	16236686	16236916	.	-	.	Parent=Os10t0447950-00
Chr10	irgsp1_rep	CDS	16235573	16236685	.	-	0	Parent=Os10t0447950-00
Chr10	irgsp1_rep	three_prime_UTR	16235568	16235572	.	-	.	Parent=Os10t0447950-00
Chr10	irgsp1_rep	mRNA	16242053	16243154	.	+	.	ID=Os10t0448000-00;Name=Os10t0448000-00;Locus_id=Os10g0448000;Note=Hypothetical protein.;Transcript_evidence=AK334240 (DDBJ);ORF_evidence=GeneMark;TENOR=Os10t0448000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	16242053	16242333	.	+	0	Parent=Os10t0448000-00
Chr10	irgsp1_rep	CDS	16242439	16242730	.	+	1	Parent=Os10t0448000-00
Chr10	irgsp1_rep	three_prime_UTR	16242731	16243154	.	+	.	Parent=Os10t0448000-00
Chr10	irgsp1_rep	mRNA	16312880	16313481	.	-	.	ID=Os10t0449400-00;Name=Os10t0449400-00;Locus_id=Os10g0449400;Note=Hypothetical conserved gene.;Transcript_evidence=AK063043 (DDBJ%2C Secondary hit);ORF_evidence=B8B4E1 (UniProt);Expression=AK063043;TENOR=Os10t0449400-00;KEGG=Os10t0449400-00
Chr10	irgsp1_rep	CDS	16312975	16313481	.	-	0	Parent=Os10t0449400-00
Chr10	irgsp1_rep	three_prime_UTR	16312880	16312974	.	-	.	Parent=Os10t0449400-00
Chr10	irgsp1_rep	mRNA	16385114	16386762	.	+	.	ID=Os10t0450000-01;Name=Os10t0450000-01;Locus_id=Os10g0450000;Note=Protein of unknown function DUF247%2C plant family protein.;Transcript_evidence=AK063548 (DDBJ%2C Best hit);ORF_evidence=B9G613 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);NIAS_FLcDNA=001-117-D05;Expression=AK063548;TENOR=Os10t0450000-01;KEGG=Os10t0450000-01
Chr10	irgsp1_rep	five_prime_UTR	16385114	16385114	.	+	.	Parent=Os10t0450000-01
Chr10	irgsp1_rep	CDS	16385115	16385591	.	+	0	Parent=Os10t0450000-01
Chr10	irgsp1_rep	CDS	16385826	16386521	.	+	0	Parent=Os10t0450000-01
Chr10	irgsp1_rep	three_prime_UTR	16386522	16386762	.	+	.	Parent=Os10t0450000-01
Chr10	irgsp1_rep	mRNA	16385198	16386387	.	+	.	ID=Os10t0450000-02;Name=Os10t0450000-02;Locus_id=Os10g0450000;Note=Hypothetical conserved gene.;Transcript_evidence=AK100863 (DDBJ%2C Best hit);ORF_evidence=Q337Q3 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);NIAS_FLcDNA=J023123O11;TENOR=Os10t0450000-02
Chr10	irgsp1_rep	five_prime_UTR	16385198	16385198	.	+	.	Parent=Os10t0450000-02
Chr10	irgsp1_rep	CDS	16385199	16386387	.	+	0	Parent=Os10t0450000-02
Chr10	irgsp1_rep	mRNA	16408958	16415735	.	+	.	ID=Os10t0450400-01;Name=Os10t0450400-01;Locus_id=Os10g0450400;Note=Protein of unknown function DUF594 family protein.;Transcript_evidence=AK119329 (DDBJ%2C Best hit);ORF_evidence=B8BH73 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);NIAS_FLcDNA=001-131-B04;Expression=AK119329;TENOR=Os10t0450400-01;KEGG=Os10t0450400-01
Chr10	irgsp1_rep	five_prime_UTR	16408958	16409070	.	+	.	Parent=Os10t0450400-01
Chr10	irgsp1_rep	five_prime_UTR	16409174	16409303	.	+	.	Parent=Os10t0450400-01
Chr10	irgsp1_rep	five_prime_UTR	16409399	16409541	.	+	.	Parent=Os10t0450400-01
Chr10	irgsp1_rep	five_prime_UTR	16413081	16413120	.	+	.	Parent=Os10t0450400-01
Chr10	irgsp1_rep	CDS	16413121	16415556	.	+	0	Parent=Os10t0450400-01
Chr10	irgsp1_rep	three_prime_UTR	16415557	16415735	.	+	.	Parent=Os10t0450400-01
Chr10	irgsp1_rep	mRNA	16426027	16426928	.	-	.	ID=Os10t0450800-02;Name=Os10t0450800-02;Locus_id=Os10g0450800;Note=Hypothetical protein.;Transcript_evidence=AK061298 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=006-301-E04;TENOR=Os10t0450800-02;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	16426820	16426928	.	-	.	Parent=Os10t0450800-02
Chr10	irgsp1_rep	CDS	16426157	16426819	.	-	0	Parent=Os10t0450800-02
Chr10	irgsp1_rep	three_prime_UTR	16426027	16426156	.	-	.	Parent=Os10t0450800-02
Chr10	irgsp1_rep	mRNA	16428860	16429924	.	-	.	ID=Os10t0450900-02;Name=Os10t0450900-02;Locus_id=Os10g0450900;RAP-DB Gene Symbol Synonym(s)=OsGRP2;RAP-DB Gene Name Synonym(s)=glycine-rich protein 2;Oryzabase Gene Symbol Synonym(s)=GRP%2C Osgrp-2%2C OsGRP-2%2C GRCWP;Oryzabase Gene Name Synonym(s)=glycine-rich protein%2C Glycine-rich protein 2%2C glycine-rich cell wall protein;Note=Cell wall structural protein%2C Tapetal differentiation%2C Pollen maturation;Transcript_evidence=AK064310,AK064065,AK119244;ORF_evidence=A3C5A7;NIAS_FLcDNA=002-107-B12,001-125-G03,001-120-B06;Manual Curation=September 23%2C 2020;Literature_PMID=32929552;Oryzabase=14431;Expression=AK064310;TENOR=Os10t0450900-02;KEGG=Os10t0450900-02
Chr10	irgsp1_rep	five_prime_UTR	16429878	16429924	.	-	.	Parent=Os10t0450900-02
Chr10	irgsp1_rep	CDS	16429320	16429877	.	-	0	Parent=Os10t0450900-02
Chr10	irgsp1_rep	three_prime_UTR	16428860	16429319	.	-	.	Parent=Os10t0450900-02
Chr10	irgsp1_rep	mRNA	16458009	16460896	.	+	.	ID=Os10t0451600-01;Name=Os10t0451600-01;Locus_id=Os10g0451600;Note=Non-protein coding transcript.;Transcript_evidence=AK288262 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090016B02;TENOR=Os10t0451600-01
Chr10	irgsp1_rep	exon	16458009	16460896	.	+	.	Parent=Os10t0451600-01
Chr10	irgsp1_rep	mRNA	16476146	16477079	.	-	.	ID=Os10t0451700-01;Name=Os10t0451700-01;Locus_id=Os10g0451700;Note=Hypothetical protein.;Transcript_evidence=AK103350 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033126I04;TENOR=Os10t0451700-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	16477050	16477079	.	-	.	Parent=Os10t0451700-01
Chr10	irgsp1_rep	CDS	16476357	16477049	.	-	0	Parent=Os10t0451700-01
Chr10	irgsp1_rep	three_prime_UTR	16476146	16476356	.	-	.	Parent=Os10t0451700-01
Chr10	irgsp1_rep	mRNA	16481078	16482112	.	-	.	ID=Os10t0451900-01;Name=Os10t0451900-01;Locus_id=Os10g0451900;Oryzabase Gene Name Synonym(s)=Glycine-rich cell wall structural protein;Note=Peptidase S8 and S53%2C subtilisin%2C kexin%2C sedolisin domain containing protein.;Transcript_evidence=AK102661 (DDBJ%2C Best hit),AK064070 (DDBJ%2C Best hit);ORF_evidence=B8BH82 (UniProt);NIAS_FLcDNA=J033101I22,001-125-G10;Oryzabase=17624;Expression=AK102661;TENOR=Os10t0451900-01;KEGG=Os10t0451900-01
Chr10	irgsp1_rep	five_prime_UTR	16481699	16482112	.	-	.	Parent=Os10t0451900-01
Chr10	irgsp1_rep	CDS	16481216	16481698	.	-	0	Parent=Os10t0451900-01
Chr10	irgsp1_rep	three_prime_UTR	16481078	16481215	.	-	.	Parent=Os10t0451900-01
Chr10	irgsp1_rep	mRNA	16486346	16487160	.	-	.	ID=Os10t0452100-01;Name=Os10t0452100-01;Locus_id=Os10g0452100;Note=Conserved hypothetical protein.;Transcript_evidence=AK063328 (DDBJ%2C Best hit);ORF_evidence=Q337Q0 (UniProt);NIAS_FLcDNA=001-113-H09;TENOR=Os10t0452100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	16487066	16487160	.	-	.	Parent=Os10t0452100-01
Chr10	irgsp1_rep	CDS	16486553	16487065	.	-	0	Parent=Os10t0452100-01
Chr10	irgsp1_rep	three_prime_UTR	16486346	16486552	.	-	.	Parent=Os10t0452100-01
Chr10	irgsp1_rep	mRNA	16494319	16495128	.	-	.	ID=Os10t0452300-01;Name=Os10t0452300-01;Locus_id=Os10g0452300;Oryzabase Gene Symbol Synonym(s)=CAI1;Oryzabase Gene Name Synonym(s)=compatible strain of P. avenae-induced gene 1;Note=Eggshell protein family protein.;Transcript_evidence=AK121664 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033066G06;Oryzabase=13671;Expression=AK121664;TENOR=Os10t0452300-01;KEGG=Os10t0452300-01
Chr10	irgsp1_rep	five_prime_UTR	16495093	16495128	.	-	.	Parent=Os10t0452300-01
Chr10	irgsp1_rep	CDS	16494535	16495092	.	-	0	Parent=Os10t0452300-01
Chr10	irgsp1_rep	three_prime_UTR	16494319	16494534	.	-	.	Parent=Os10t0452300-01
Chr10	irgsp1_rep	mRNA	16500928	16501740	.	-	.	ID=Os10t0452500-00;Name=Os10t0452500-00;Locus_id=Os10g0452500;Note=Similar to Glycine-rich protein precursor.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001064735.1 (RefSeq);TENOR=Os10t0452500-00;KEGG=Os10t0452500-00
Chr10	irgsp1_rep	CDS	16500928	16501740	.	-	0	Parent=Os10t0452500-00
Chr10	irgsp1_rep	mRNA	16507486	16508277	.	-	.	ID=Os10t0452700-01;Name=Os10t0452700-01;Locus_id=Os10g0452700;Note=Eggshell protein family protein.;Transcript_evidence=AK289167 (DDBJ%2C Best hit);ORF_evidence=NP_001064736.1 (RefSeq);NIAS_FLcDNA=J100010B14;TENOR=Os10t0452700-01;KEGG=Os10t0452700-01
Chr10	irgsp1_rep	five_prime_UTR	16508241	16508277	.	-	.	Parent=Os10t0452700-01
Chr10	irgsp1_rep	CDS	16507662	16508240	.	-	0	Parent=Os10t0452700-01
Chr10	irgsp1_rep	three_prime_UTR	16507486	16507661	.	-	.	Parent=Os10t0452700-01
Chr10	irgsp1_rep	mRNA	16509089	16512835	.	-	.	ID=Os10t0452800-01;Name=Os10t0452800-01;Locus_id=Os10g0452800;Note=Similar to Rev interacting protein mis3-like.;Transcript_evidence=AK070158 (DDBJ%2C Best hit);ORF_evidence=NP_196459.1 (RefSeq);InterPro=Ribosomal RNA assembly KRR1 (IPR024166);NIAS_FLcDNA=J023045I05;Expression=AK070158;TENOR=Os10t0452800-01;KEGG=Os10t0452800-01
Chr10	irgsp1_rep	five_prime_UTR	16512730	16512835	.	-	.	Parent=Os10t0452800-01
Chr10	irgsp1_rep	CDS	16512510	16512729	.	-	0	Parent=Os10t0452800-01
Chr10	irgsp1_rep	CDS	16512335	16512411	.	-	2	Parent=Os10t0452800-01
Chr10	irgsp1_rep	CDS	16512124	16512234	.	-	0	Parent=Os10t0452800-01
Chr10	irgsp1_rep	CDS	16511866	16511934	.	-	0	Parent=Os10t0452800-01
Chr10	irgsp1_rep	CDS	16511169	16511225	.	-	0	Parent=Os10t0452800-01
Chr10	irgsp1_rep	CDS	16511034	16511072	.	-	0	Parent=Os10t0452800-01
Chr10	irgsp1_rep	CDS	16510820	16510924	.	-	0	Parent=Os10t0452800-01
Chr10	irgsp1_rep	CDS	16510644	16510726	.	-	0	Parent=Os10t0452800-01
Chr10	irgsp1_rep	CDS	16510470	16510551	.	-	1	Parent=Os10t0452800-01
Chr10	irgsp1_rep	CDS	16509978	16510121	.	-	0	Parent=Os10t0452800-01
Chr10	irgsp1_rep	CDS	16509820	16509900	.	-	0	Parent=Os10t0452800-01
Chr10	irgsp1_rep	CDS	16509601	16509720	.	-	0	Parent=Os10t0452800-01
Chr10	irgsp1_rep	three_prime_UTR	16509089	16509600	.	-	.	Parent=Os10t0452800-01
Chr10	irgsp1_rep	mRNA	16518769	16519232	.	-	.	ID=Os10t0453000-01;Name=Os10t0453000-01;Locus_id=Os10g0453000;Note=Hypothetical protein.;Transcript_evidence=AK241027 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065057H22;TENOR=Os10t0453000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	16519230	16519232	.	-	.	Parent=Os10t0453000-01
Chr10	irgsp1_rep	CDS	16519014	16519229	.	-	0	Parent=Os10t0453000-01
Chr10	irgsp1_rep	three_prime_UTR	16518769	16519013	.	-	.	Parent=Os10t0453000-01
Chr10	irgsp1_rep	mRNA	16581609	16582365	.	-	.	ID=Os10t0453900-01;Name=Os10t0453900-01;Locus_id=Os10g0453900;Oryzabase Gene Symbol Synonym(s)=OsGRP7%2C GRP7;Oryzabase Gene Name Synonym(s)=GLYCINE-RICH PROTEIN 7;Note=Eggshell protein family protein.;Transcript_evidence=AK243091 (DDBJ%2C Best hit);ORF_evidence=NP_001151525.1 (RefSeq);NIAS_FLcDNA=J100022N22;Oryzabase=20410;TENOR=Os10t0453900-01;KEGG=Os10t0453900-01
Chr10	irgsp1_rep	five_prime_UTR	16582323	16582365	.	-	.	Parent=Os10t0453900-01
Chr10	irgsp1_rep	CDS	16581744	16582322	.	-	0	Parent=Os10t0453900-01
Chr10	irgsp1_rep	three_prime_UTR	16581609	16581743	.	-	.	Parent=Os10t0453900-01
Chr10	irgsp1_rep	mRNA	16592285	16593089	.	+	.	ID=Os10t0454200-01;Name=Os10t0454200-01;Locus_id=Os10g0454200;Note=Eggshell protein family protein.;Transcript_evidence=AK243351 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100060H16;TENOR=Os10t0454200-01;KEGG=Os10t0454200-01
Chr10	irgsp1_rep	five_prime_UTR	16592285	16592326	.	+	.	Parent=Os10t0454200-01
Chr10	irgsp1_rep	CDS	16592327	16592896	.	+	0	Parent=Os10t0454200-01
Chr10	irgsp1_rep	three_prime_UTR	16592897	16593089	.	+	.	Parent=Os10t0454200-01
Chr10	irgsp1_rep	mRNA	16599488	16600321	.	-	.	ID=Os10t0454300-01;Name=Os10t0454300-01;Locus_id=Os10g0454300;Note=Eggshell protein family protein.;Transcript_evidence=AK073080 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033013M12;Expression=AK073080;TENOR=Os10t0454300-01;KEGG=Os10t0454300-01
Chr10	irgsp1_rep	five_prime_UTR	16600286	16600321	.	-	.	Parent=Os10t0454300-01
Chr10	irgsp1_rep	CDS	16599704	16600285	.	-	0	Parent=Os10t0454300-01
Chr10	irgsp1_rep	three_prime_UTR	16599488	16599703	.	-	.	Parent=Os10t0454300-01
Chr10	irgsp1_rep	mRNA	16648632	16650005	.	-	.	ID=Os10t0455800-01;Name=Os10t0455800-01;Locus_id=Os10g0455800;Note=Hypothetical conserved gene.;Transcript_evidence=AK288123 (DDBJ%2C Best hit);ORF_evidence=XP_002331142.1 (RefSeq);NIAS_FLcDNA=J080072O03;TENOR=Os10t0455800-01;KEGG=Os10t0455800-01
Chr10	irgsp1_rep	five_prime_UTR	16649317	16650005	.	-	.	Parent=Os10t0455800-01
Chr10	irgsp1_rep	CDS	16648816	16649316	.	-	0	Parent=Os10t0455800-01
Chr10	irgsp1_rep	three_prime_UTR	16648632	16648815	.	-	.	Parent=Os10t0455800-01
Chr10	irgsp1_rep	mRNA	16651842	16660227	.	+	.	ID=Os10t0455900-01;Name=Os10t0455900-01;Locus_id=Os10g0455900;Note=Pleckstrin homology-type domain containing protein.;Transcript_evidence=AK072120 (DDBJ%2C Best hit);ORF_evidence=NP_199369.2 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Pleckstrin homology domain (IPR001849),Pleckstrin homology-type (IPR011993),START-like domain (IPR023393);NIAS_FLcDNA=J013127E14;Expression=AK072120;TENOR=Os10t0455900-01;KEGG=Os10t0455900-01
Chr10	irgsp1_rep	five_prime_UTR	16651842	16652121	.	+	.	Parent=Os10t0455900-01
Chr10	irgsp1_rep	five_prime_UTR	16652454	16652482	.	+	.	Parent=Os10t0455900-01
Chr10	irgsp1_rep	CDS	16652483	16652713	.	+	0	Parent=Os10t0455900-01
Chr10	irgsp1_rep	CDS	16652813	16652866	.	+	0	Parent=Os10t0455900-01
Chr10	irgsp1_rep	CDS	16653271	16653336	.	+	0	Parent=Os10t0455900-01
Chr10	irgsp1_rep	CDS	16653592	16653698	.	+	0	Parent=Os10t0455900-01
Chr10	irgsp1_rep	CDS	16654477	16654550	.	+	1	Parent=Os10t0455900-01
Chr10	irgsp1_rep	CDS	16654655	16654770	.	+	2	Parent=Os10t0455900-01
Chr10	irgsp1_rep	CDS	16654868	16654909	.	+	0	Parent=Os10t0455900-01
Chr10	irgsp1_rep	CDS	16655000	16655100	.	+	0	Parent=Os10t0455900-01
Chr10	irgsp1_rep	CDS	16655205	16655222	.	+	1	Parent=Os10t0455900-01
Chr10	irgsp1_rep	CDS	16655284	16655300	.	+	1	Parent=Os10t0455900-01
Chr10	irgsp1_rep	CDS	16655720	16655784	.	+	2	Parent=Os10t0455900-01
Chr10	irgsp1_rep	CDS	16655862	16655918	.	+	0	Parent=Os10t0455900-01
Chr10	irgsp1_rep	three_prime_UTR	16655919	16655933	.	+	.	Parent=Os10t0455900-01
Chr10	irgsp1_rep	three_prime_UTR	16656055	16656210	.	+	.	Parent=Os10t0455900-01
Chr10	irgsp1_rep	three_prime_UTR	16657232	16657449	.	+	.	Parent=Os10t0455900-01
Chr10	irgsp1_rep	three_prime_UTR	16657524	16657563	.	+	.	Parent=Os10t0455900-01
Chr10	irgsp1_rep	three_prime_UTR	16657649	16657803	.	+	.	Parent=Os10t0455900-01
Chr10	irgsp1_rep	three_prime_UTR	16657891	16657992	.	+	.	Parent=Os10t0455900-01
Chr10	irgsp1_rep	three_prime_UTR	16658421	16658465	.	+	.	Parent=Os10t0455900-01
Chr10	irgsp1_rep	three_prime_UTR	16659055	16659195	.	+	.	Parent=Os10t0455900-01
Chr10	irgsp1_rep	three_prime_UTR	16659337	16659432	.	+	.	Parent=Os10t0455900-01
Chr10	irgsp1_rep	three_prime_UTR	16659580	16659681	.	+	.	Parent=Os10t0455900-01
Chr10	irgsp1_rep	three_prime_UTR	16659776	16660227	.	+	.	Parent=Os10t0455900-01
Chr10	irgsp1_rep	mRNA	16663612	16664794	.	-	.	ID=Os10t0456000-01;Name=Os10t0456000-01;Locus_id=Os10g0456000;Note=Hypothetical protein.;Transcript_evidence=AK067745 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013118E15;Expression=AK067745;TENOR=Os10t0456000-01;KEGG=Os10t0456000-01
Chr10	irgsp1_rep	five_prime_UTR	16664693	16664794	.	-	.	Parent=Os10t0456000-01
Chr10	irgsp1_rep	CDS	16664060	16664692	.	-	0	Parent=Os10t0456000-01
Chr10	irgsp1_rep	three_prime_UTR	16663612	16664059	.	-	.	Parent=Os10t0456000-01
Chr10	irgsp1_rep	mRNA	16663932	16664717	.	+	.	ID=Os10t0456100-00;Name=Os10t0456100-00;Locus_id=Os10g0456100;Note=Similar to Brn1-like protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B6U3Y1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);TENOR=Os10t0456100-00;KEGG=Os10t0456100-00
Chr10	irgsp1_rep	CDS	16663932	16664717	.	+	0	Parent=Os10t0456100-00
Chr10	irgsp1_rep	mRNA	16665830	16673464	.	-	.	ID=Os10t0456200-01;Name=Os10t0456200-01;Locus_id=Os10g0456200;Oryzabase Gene Symbol Synonym(s)=OsIRL8;Oryzabase Gene Name Synonym(s)=intracellular Ras-group-related LRR protein 8;Note=Similar to small GTP-binding protein domain.;Transcript_evidence=AK099701 (DDBJ%2C Best hit);ORF_evidence=B9G624 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin (IPR000626),Ubiquitin supergroup (IPR019955);NIAS_FLcDNA=J013075D06;Oryzabase=14438;Expression=AK099701;TENOR=Os10t0456200-01;KEGG=Os10t0456200-01
Chr10	irgsp1_rep	five_prime_UTR	16673399	16673464	.	-	.	Parent=Os10t0456200-01
Chr10	irgsp1_rep	CDS	16673229	16673398	.	-	0	Parent=Os10t0456200-01
Chr10	irgsp1_rep	CDS	16673028	16673121	.	-	1	Parent=Os10t0456200-01
Chr10	irgsp1_rep	CDS	16671945	16672148	.	-	0	Parent=Os10t0456200-01
Chr10	irgsp1_rep	three_prime_UTR	16670012	16671944	.	-	.	Parent=Os10t0456200-01
Chr10	irgsp1_rep	three_prime_UTR	16669823	16669923	.	-	.	Parent=Os10t0456200-01
Chr10	irgsp1_rep	three_prime_UTR	16668213	16668350	.	-	.	Parent=Os10t0456200-01
Chr10	irgsp1_rep	three_prime_UTR	16667828	16667876	.	-	.	Parent=Os10t0456200-01
Chr10	irgsp1_rep	three_prime_UTR	16667645	16667710	.	-	.	Parent=Os10t0456200-01
Chr10	irgsp1_rep	three_prime_UTR	16666764	16666883	.	-	.	Parent=Os10t0456200-01
Chr10	irgsp1_rep	three_prime_UTR	16665830	16666256	.	-	.	Parent=Os10t0456200-01
Chr10	irgsp1_rep	mRNA	16675581	16677867	.	+	.	ID=Os10t0456400-01;Name=Os10t0456400-01;Locus_id=Os10g0456400;Note=Conserved hypothetical protein.;Transcript_evidence=AK101916 (DDBJ%2C Best hit);ORF_evidence=B9G625 (UniProt);NIAS_FLcDNA=J033071I02;Expression=AK101916;TENOR=Os10t0456400-01;KEGG=Os10t0456400-01
Chr10	irgsp1_rep	five_prime_UTR	16675581	16675682	.	+	.	Parent=Os10t0456400-01
Chr10	irgsp1_rep	CDS	16675683	16677602	.	+	0	Parent=Os10t0456400-01
Chr10	irgsp1_rep	three_prime_UTR	16677603	16677867	.	+	.	Parent=Os10t0456400-01
Chr10	irgsp1_rep	mRNA	16675641	16677869	.	+	.	ID=Os10t0456400-02;Name=Os10t0456400-02;Locus_id=Os10g0456400;Note=Conserved hypothetical protein.;Transcript_evidence=AK102067 (DDBJ%2C Best hit);ORF_evidence=B9G625 (UniProt);NIAS_FLcDNA=J033082F19;Expression=AK102067;TENOR=Os10t0456400-02;KEGG=Os10t0456400-02
Chr10	irgsp1_rep	five_prime_UTR	16675641	16675682	.	+	.	Parent=Os10t0456400-02
Chr10	irgsp1_rep	CDS	16675683	16677602	.	+	0	Parent=Os10t0456400-02
Chr10	irgsp1_rep	three_prime_UTR	16677603	16677869	.	+	.	Parent=Os10t0456400-02
Chr10	irgsp1_rep	mRNA	16686828	16693490	.	+	.	ID=Os10t0456500-01;Name=Os10t0456500-01;Locus_id=Os10g0456500;Note=Similar to Glutamine synthetase (Fragment).;Transcript_evidence=AK099882 (DDBJ%2C Best hit);ORF_evidence=Q5MD07 (UniProt);GO=Biological Process: glutamine biosynthetic process (GO:0006542),Biological Process: nitrogen compound metabolic process (GO:0006807),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: glutamate-ammonia ligase activity (GO:0004356);InterPro=Amidohydrolase 2 (IPR006992),Glutamine synthetase%2C beta-Grasp (IPR008147);NIAS_FLcDNA=J013111O16;Expression=AK099882;TENOR=Os10t0456500-01;KEGG=Os10t0456500-01
Chr10	irgsp1_rep	five_prime_UTR	16686828	16686975	.	+	.	Parent=Os10t0456500-01
Chr10	irgsp1_rep	CDS	16686976	16687152	.	+	0	Parent=Os10t0456500-01
Chr10	irgsp1_rep	CDS	16688213	16688464	.	+	0	Parent=Os10t0456500-01
Chr10	irgsp1_rep	CDS	16688591	16688657	.	+	0	Parent=Os10t0456500-01
Chr10	irgsp1_rep	CDS	16688750	16688866	.	+	2	Parent=Os10t0456500-01
Chr10	irgsp1_rep	CDS	16688964	16689069	.	+	2	Parent=Os10t0456500-01
Chr10	irgsp1_rep	CDS	16689152	16689308	.	+	1	Parent=Os10t0456500-01
Chr10	irgsp1_rep	CDS	16689385	16689480	.	+	0	Parent=Os10t0456500-01
Chr10	irgsp1_rep	CDS	16689962	16690010	.	+	0	Parent=Os10t0456500-01
Chr10	irgsp1_rep	CDS	16690111	16690370	.	+	2	Parent=Os10t0456500-01
Chr10	irgsp1_rep	CDS	16690492	16690668	.	+	0	Parent=Os10t0456500-01
Chr10	irgsp1_rep	three_prime_UTR	16690669	16690977	.	+	.	Parent=Os10t0456500-01
Chr10	irgsp1_rep	three_prime_UTR	16691088	16691140	.	+	.	Parent=Os10t0456500-01
Chr10	irgsp1_rep	three_prime_UTR	16691253	16691382	.	+	.	Parent=Os10t0456500-01
Chr10	irgsp1_rep	three_prime_UTR	16691536	16691681	.	+	.	Parent=Os10t0456500-01
Chr10	irgsp1_rep	three_prime_UTR	16692052	16692240	.	+	.	Parent=Os10t0456500-01
Chr10	irgsp1_rep	three_prime_UTR	16692482	16692714	.	+	.	Parent=Os10t0456500-01
Chr10	irgsp1_rep	three_prime_UTR	16692949	16693097	.	+	.	Parent=Os10t0456500-01
Chr10	irgsp1_rep	three_prime_UTR	16693207	16693490	.	+	.	Parent=Os10t0456500-01
Chr10	irgsp1_rep	mRNA	16686837	16693490	.	+	.	ID=Os10t0456500-02;Name=Os10t0456500-02;Locus_id=Os10g0456500;Note=Similar to Nodulin 6l.;Transcript_evidence=AK066867 (DDBJ%2C Best hit);ORF_evidence=NP_190886.4 (RefSeq);GO=Biological Process: glutamine biosynthetic process (GO:0006542),Biological Process: nitrogen compound metabolic process (GO:0006807),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: glutamate-ammonia ligase activity (GO:0004356);InterPro=Amidohydrolase 2 (IPR006992),Glutamine synthetase%2C catalytic domain (IPR008146),Glutamine synthetase%2C beta-Grasp (IPR008147),Glutamine synthetase/guanido kinase%2C catalytic domain (IPR014746);NIAS_FLcDNA=J013075P13;Expression=AK066867;TENOR=Os10t0456500-02;KEGG=Os10t0456500-02
Chr10	irgsp1_rep	five_prime_UTR	16686837	16686975	.	+	.	Parent=Os10t0456500-02
Chr10	irgsp1_rep	CDS	16686976	16687152	.	+	0	Parent=Os10t0456500-02
Chr10	irgsp1_rep	CDS	16688213	16688464	.	+	0	Parent=Os10t0456500-02
Chr10	irgsp1_rep	CDS	16688591	16688657	.	+	0	Parent=Os10t0456500-02
Chr10	irgsp1_rep	CDS	16688750	16688866	.	+	2	Parent=Os10t0456500-02
Chr10	irgsp1_rep	CDS	16688964	16689069	.	+	2	Parent=Os10t0456500-02
Chr10	irgsp1_rep	CDS	16689152	16689308	.	+	1	Parent=Os10t0456500-02
Chr10	irgsp1_rep	CDS	16689385	16689480	.	+	0	Parent=Os10t0456500-02
Chr10	irgsp1_rep	CDS	16689962	16690010	.	+	0	Parent=Os10t0456500-02
Chr10	irgsp1_rep	CDS	16690111	16690370	.	+	2	Parent=Os10t0456500-02
Chr10	irgsp1_rep	CDS	16690492	16690664	.	+	0	Parent=Os10t0456500-02
Chr10	irgsp1_rep	CDS	16690857	16690977	.	+	1	Parent=Os10t0456500-02
Chr10	irgsp1_rep	CDS	16691088	16691140	.	+	0	Parent=Os10t0456500-02
Chr10	irgsp1_rep	CDS	16691253	16691382	.	+	1	Parent=Os10t0456500-02
Chr10	irgsp1_rep	CDS	16691536	16691681	.	+	0	Parent=Os10t0456500-02
Chr10	irgsp1_rep	CDS	16692052	16692240	.	+	1	Parent=Os10t0456500-02
Chr10	irgsp1_rep	CDS	16692482	16692714	.	+	1	Parent=Os10t0456500-02
Chr10	irgsp1_rep	CDS	16692949	16693097	.	+	2	Parent=Os10t0456500-02
Chr10	irgsp1_rep	CDS	16693207	16693269	.	+	0	Parent=Os10t0456500-02
Chr10	irgsp1_rep	three_prime_UTR	16693270	16693490	.	+	.	Parent=Os10t0456500-02
Chr10	irgsp1_rep	mRNA	16686920	16693269	.	-	.	ID=Os10t0456550-00;Name=Os10t0456550-00;Locus_id=Os10g0456550;Note=Hypothetical protein.;Transcript_evidence=tplb0060b18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0456550-00
Chr10	irgsp1_rep	five_prime_UTR	16693222	16693269	.	-	.	Parent=Os10t0456550-00
Chr10	irgsp1_rep	five_prime_UTR	16692957	16693114	.	-	.	Parent=Os10t0456550-00
Chr10	irgsp1_rep	five_prime_UTR	16692480	16692711	.	-	.	Parent=Os10t0456550-00
Chr10	irgsp1_rep	five_prime_UTR	16692045	16692238	.	-	.	Parent=Os10t0456550-00
Chr10	irgsp1_rep	five_prime_UTR	16691533	16691673	.	-	.	Parent=Os10t0456550-00
Chr10	irgsp1_rep	five_prime_UTR	16691234	16691379	.	-	.	Parent=Os10t0456550-00
Chr10	irgsp1_rep	five_prime_UTR	16690865	16691120	.	-	.	Parent=Os10t0456550-00
Chr10	irgsp1_rep	five_prime_UTR	16690491	16690669	.	-	.	Parent=Os10t0456550-00
Chr10	irgsp1_rep	five_prime_UTR	16690092	16690369	.	-	.	Parent=Os10t0456550-00
Chr10	irgsp1_rep	five_prime_UTR	16689391	16689511	.	-	.	Parent=Os10t0456550-00
Chr10	irgsp1_rep	five_prime_UTR	16689150	16689316	.	-	.	Parent=Os10t0456550-00
Chr10	irgsp1_rep	five_prime_UTR	16688740	16688865	.	-	.	Parent=Os10t0456550-00
Chr10	irgsp1_rep	five_prime_UTR	16688362	16688517	.	-	.	Parent=Os10t0456550-00
Chr10	irgsp1_rep	CDS	16688199	16688361	.	-	0	Parent=Os10t0456550-00
Chr10	irgsp1_rep	CDS	16686920	16687142	.	-	2	Parent=Os10t0456550-00
Chr10	irgsp1_rep	mRNA	16693561	16697503	.	-	.	ID=Os10t0456600-01;Name=Os10t0456600-01;Locus_id=Os10g0456600;Oryzabase Gene Symbol Synonym(s)=OsRab18B1;Oryzabase Gene Name Synonym(s)=small GTP-binding protein OsRab18B1;Note=ADP-ribosylation factor domain containing protein.;Transcript_evidence=AK102843 (DDBJ%2C Best hit);ORF_evidence=NP_001152280.1 (RefSeq);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: intracellular protein transport (GO:0006886),Biological Process: nucleocytoplasmic transport (GO:0006913),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Cellular Component: membrane (GO:0016020),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Ran GTPase (IPR002041),Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C Ras type (IPR020849),Small GTPase superfamily%2C ARF type (IPR024156);NIAS_FLcDNA=J033109P10;Oryzabase=11111;Expression=AK102843;TENOR=Os10t0456600-01;KEGG=Os10t0456600-01
Chr10	irgsp1_rep	five_prime_UTR	16697323	16697503	.	-	.	Parent=Os10t0456600-01
Chr10	irgsp1_rep	CDS	16697154	16697322	.	-	0	Parent=Os10t0456600-01
Chr10	irgsp1_rep	CDS	16696367	16696435	.	-	2	Parent=Os10t0456600-01
Chr10	irgsp1_rep	CDS	16695238	16695303	.	-	2	Parent=Os10t0456600-01
Chr10	irgsp1_rep	CDS	16694684	16694805	.	-	2	Parent=Os10t0456600-01
Chr10	irgsp1_rep	CDS	16694362	16694490	.	-	0	Parent=Os10t0456600-01
Chr10	irgsp1_rep	CDS	16693811	16693924	.	-	0	Parent=Os10t0456600-01
Chr10	irgsp1_rep	three_prime_UTR	16693561	16693810	.	-	.	Parent=Os10t0456600-01
Chr10	irgsp1_rep	mRNA	16704970	16708495	.	-	.	ID=Os10t0456800-01;Name=Os10t0456800-01;Locus_id=Os10g0456800;RAP-DB Gene Symbol Synonym(s)=DCA1;RAP-DB Gene Name Synonym(s)=DST Co-activator 1;CGSNL Gene Symbol=DCA1;CGSNL Gene Name=DST CO-ACTIVATOR 1;Oryzabase Gene Symbol Synonym(s)=OsDCA1;Oryzabase Gene Name Synonym(s)=DST Co-activator 1;Note=CHY zinc finger protein%2C Transcriptional co-activator of DST (Drought and Salt Tolerance: zinc finger transcription factor gene)%2C Drought and salt tolerance%2C Stomatal aperture control;Transcript_evidence=AK071137,AK104810;ORF_evidence=Q337P2;GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CHY-type (IPR008913),Zinc finger%2C CTCHY-type (IPR017921),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841),Rubredoxin-type fold (IPR004039);NIAS_FLcDNA=J023077E12, 001-040-G01;Manual Curation=November 17%2C 2015;Literature_PMID=26496194;Oryzabase=22358;Expression=AK071137;TENOR=Os10t0456800-01;KEGG=Os10t0456800-01
Chr10	irgsp1_rep	five_prime_UTR	16708346	16708495	.	-	.	Parent=Os10t0456800-01
Chr10	irgsp1_rep	CDS	16708320	16708345	.	-	0	Parent=Os10t0456800-01
Chr10	irgsp1_rep	CDS	16708077	16708164	.	-	1	Parent=Os10t0456800-01
Chr10	irgsp1_rep	CDS	16707877	16707936	.	-	0	Parent=Os10t0456800-01
Chr10	irgsp1_rep	CDS	16706929	16706961	.	-	0	Parent=Os10t0456800-01
Chr10	irgsp1_rep	CDS	16706729	16706806	.	-	0	Parent=Os10t0456800-01
Chr10	irgsp1_rep	CDS	16706558	16706601	.	-	0	Parent=Os10t0456800-01
Chr10	irgsp1_rep	CDS	16706426	16706466	.	-	1	Parent=Os10t0456800-01
Chr10	irgsp1_rep	CDS	16706218	16706300	.	-	2	Parent=Os10t0456800-01
Chr10	irgsp1_rep	CDS	16705998	16706089	.	-	0	Parent=Os10t0456800-01
Chr10	irgsp1_rep	CDS	16705804	16705915	.	-	1	Parent=Os10t0456800-01
Chr10	irgsp1_rep	CDS	16705301	16705444	.	-	0	Parent=Os10t0456800-01
Chr10	irgsp1_rep	three_prime_UTR	16704970	16705300	.	-	.	Parent=Os10t0456800-01
Chr10	irgsp1_rep	mRNA	16705515	16708492	.	-	.	ID=Os10t0456800-02;Name=Os10t0456800-02;Locus_id=Os10g0456800;CGSNL Gene Symbol=DCA1;CGSNL Gene Name=DST CO-ACTIVATOR 1;Oryzabase Gene Symbol Synonym(s)=OsDCA1;Oryzabase Gene Name Synonym(s)=DST Co-activator 1;Note=Similar to CHY zinc finger family protein%2C expressed.;Transcript_evidence=AK072693 (DDBJ%2C Best hit);ORF_evidence=B4FDC6 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C CHY-type (IPR008913),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C CTCHY-type (IPR017921);NIAS_FLcDNA=J023142C17;Oryzabase=22358;Expression=AK072693;TENOR=Os10t0456800-02;KEGG=Os10t0456800-02
Chr10	irgsp1_rep	five_prime_UTR	16708346	16708492	.	-	.	Parent=Os10t0456800-02
Chr10	irgsp1_rep	CDS	16708320	16708345	.	-	0	Parent=Os10t0456800-02
Chr10	irgsp1_rep	CDS	16708077	16708164	.	-	1	Parent=Os10t0456800-02
Chr10	irgsp1_rep	CDS	16707877	16707936	.	-	0	Parent=Os10t0456800-02
Chr10	irgsp1_rep	CDS	16706929	16706961	.	-	0	Parent=Os10t0456800-02
Chr10	irgsp1_rep	CDS	16706729	16706806	.	-	0	Parent=Os10t0456800-02
Chr10	irgsp1_rep	CDS	16706558	16706601	.	-	0	Parent=Os10t0456800-02
Chr10	irgsp1_rep	CDS	16706426	16706466	.	-	1	Parent=Os10t0456800-02
Chr10	irgsp1_rep	CDS	16706218	16706300	.	-	2	Parent=Os10t0456800-02
Chr10	irgsp1_rep	CDS	16705998	16706089	.	-	0	Parent=Os10t0456800-02
Chr10	irgsp1_rep	CDS	16705735	16705915	.	-	1	Parent=Os10t0456800-02
Chr10	irgsp1_rep	three_prime_UTR	16705515	16705734	.	-	.	Parent=Os10t0456800-02
Chr10	irgsp1_rep	mRNA	16710226	16712552	.	-	.	ID=Os10t0456900-01;Name=Os10t0456900-01;Locus_id=Os10g0456900;Note=Similar to Midasin.;Transcript_evidence=AK064571 (DDBJ%2C Best hit);ORF_evidence=Q109L5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=von Willebrand factor%2C type A (IPR002035);NIAS_FLcDNA=002-112-D09;TENOR=Os10t0456900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	16712551	16712552	.	-	.	Parent=Os10t0456900-01
Chr10	irgsp1_rep	CDS	16711636	16712550	.	-	0	Parent=Os10t0456900-01
Chr10	irgsp1_rep	CDS	16711255	16711536	.	-	0	Parent=Os10t0456900-01
Chr10	irgsp1_rep	CDS	16710987	16711166	.	-	0	Parent=Os10t0456900-01
Chr10	irgsp1_rep	CDS	16710808	16710906	.	-	0	Parent=Os10t0456900-01
Chr10	irgsp1_rep	CDS	16710590	16710715	.	-	0	Parent=Os10t0456900-01
Chr10	irgsp1_rep	CDS	16710440	16710472	.	-	0	Parent=Os10t0456900-01
Chr10	irgsp1_rep	three_prime_UTR	16710226	16710439	.	-	.	Parent=Os10t0456900-01
Chr10	irgsp1_rep	mRNA	16738879	16742559	.	-	.	ID=Os10t0456950-00;Name=Os10t0456950-00;Locus_id=Os10g0456950;Note=Hypothetical conserved gene.;Transcript_evidence=EU963988 (DDBJ);ORF_evidence=Q109L5 (UniProt);TENOR=Os10t0456950-00
Chr10	irgsp1_rep	five_prime_UTR	16742535	16742559	.	-	.	Parent=Os10t0456950-00
Chr10	irgsp1_rep	CDS	16742104	16742534	.	-	0	Parent=Os10t0456950-00
Chr10	irgsp1_rep	CDS	16740523	16740604	.	-	1	Parent=Os10t0456950-00
Chr10	irgsp1_rep	CDS	16739446	16739717	.	-	0	Parent=Os10t0456950-00
Chr10	irgsp1_rep	CDS	16739202	16739362	.	-	1	Parent=Os10t0456950-00
Chr10	irgsp1_rep	CDS	16739075	16739100	.	-	2	Parent=Os10t0456950-00
Chr10	irgsp1_rep	three_prime_UTR	16738879	16739074	.	-	.	Parent=Os10t0456950-00
Chr10	irgsp1_rep	mRNA	16750745	16755109	.	+	.	ID=Os10t0457000-01;Name=Os10t0457000-01;Locus_id=Os10g0457000;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK060554 (DDBJ%2C Best hit),AK103490 (DDBJ%2C Best hit);ORF_evidence=NP_179441.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-022-B11,J033130N07;Expression=AK060554;TENOR=Os10t0457000-01;KEGG=Os10t0457000-01
Chr10	irgsp1_rep	five_prime_UTR	16750745	16750853	.	+	.	Parent=Os10t0457000-01
Chr10	irgsp1_rep	CDS	16750854	16750958	.	+	0	Parent=Os10t0457000-01
Chr10	irgsp1_rep	CDS	16751925	16751973	.	+	0	Parent=Os10t0457000-01
Chr10	irgsp1_rep	CDS	16752153	16752241	.	+	2	Parent=Os10t0457000-01
Chr10	irgsp1_rep	CDS	16752343	16752399	.	+	0	Parent=Os10t0457000-01
Chr10	irgsp1_rep	CDS	16752849	16752911	.	+	0	Parent=Os10t0457000-01
Chr10	irgsp1_rep	CDS	16752993	16753058	.	+	0	Parent=Os10t0457000-01
Chr10	irgsp1_rep	CDS	16753685	16753771	.	+	0	Parent=Os10t0457000-01
Chr10	irgsp1_rep	CDS	16753856	16753949	.	+	0	Parent=Os10t0457000-01
Chr10	irgsp1_rep	CDS	16754516	16754973	.	+	2	Parent=Os10t0457000-01
Chr10	irgsp1_rep	three_prime_UTR	16754974	16755109	.	+	.	Parent=Os10t0457000-01
Chr10	irgsp1_rep	mRNA	16752343	16755164	.	+	.	ID=Os10t0457000-02;Name=Os10t0457000-02;Locus_id=Os10g0457000;Note=Hypothetical conserved gene.;Transcript_evidence=AK061041 (DDBJ%2C Best hit);ORF_evidence=B9G629 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=006-205-D04;Expression=AK061041;TENOR=Os10t0457000-02;KEGG=Os10t0457000-02
Chr10	irgsp1_rep	CDS	16752343	16752399	.	+	0	Parent=Os10t0457000-02
Chr10	irgsp1_rep	CDS	16752849	16752911	.	+	0	Parent=Os10t0457000-02
Chr10	irgsp1_rep	CDS	16752993	16753058	.	+	0	Parent=Os10t0457000-02
Chr10	irgsp1_rep	CDS	16753685	16753771	.	+	0	Parent=Os10t0457000-02
Chr10	irgsp1_rep	CDS	16753856	16753949	.	+	0	Parent=Os10t0457000-02
Chr10	irgsp1_rep	CDS	16754516	16754973	.	+	2	Parent=Os10t0457000-02
Chr10	irgsp1_rep	three_prime_UTR	16754974	16755164	.	+	.	Parent=Os10t0457000-02
Chr10	irgsp1_rep	mRNA	16755659	16761229	.	-	.	ID=Os10t0457200-01;Name=Os10t0457200-01;Locus_id=Os10g0457200;RAP-DB Gene Symbol Synonym(s)=DEL1;RAP-DB Gene Name Synonym(s)=dwarf and early-senescence leaf1;CGSNL Gene Symbol=DEL1;CGSNL Gene Name=DWARF AND EARLY-SENESCENCE LEAF 1;Oryzabase Gene Symbol Synonym(s)=OsPLL12%2C PLL12;Oryzabase Gene Name Synonym(s)=dwarf and early-senescence leaf1%2C Pectate lyase-like 12;Note=Pectate lyase (PEL) precursor%2C Maintenance of normal cell division%2C Induction of leaf senescence;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;InterPro=AmbAllergen (IPR018082),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),Pectate lyase/Amb allergen (IPR002022);Manual Curation=June 9%2C 2017;Literature_PMID=28455404;Oryzabase=22379;TENOR=Os10t0457200-00
Chr10	irgsp1_rep	five_prime_UTR	16760879	16761229	.	-	.	Parent=Os10t0457200-01
Chr10	irgsp1_rep	CDS	16760742	16760878	.	-	0	Parent=Os10t0457200-01
Chr10	irgsp1_rep	CDS	16759753	16760665	.	-	1	Parent=Os10t0457200-01
Chr10	irgsp1_rep	CDS	16758777	16758982	.	-	0	Parent=Os10t0457200-01
Chr10	irgsp1_rep	CDS	16755875	16756094	.	-	1	Parent=Os10t0457200-01
Chr10	irgsp1_rep	three_prime_UTR	16755659	16755874	.	-	.	Parent=Os10t0457200-01
Chr10	irgsp1_rep	mRNA	16764526	16765174	.	-	.	ID=Os10t0457301-00;Name=Os10t0457301-00;Locus_id=Os10g0457301;Note=Hypothetical gene.;Transcript_evidence=CT831356 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os10t0457301-00;KEGG=Os10t0457301-00
Chr10	irgsp1_rep	five_prime_UTR	16765174	16765174	.	-	.	Parent=Os10t0457301-00
Chr10	irgsp1_rep	CDS	16764619	16765173	.	-	0	Parent=Os10t0457301-00
Chr10	irgsp1_rep	three_prime_UTR	16764526	16764618	.	-	.	Parent=Os10t0457301-00
Chr10	irgsp1_rep	mRNA	16766843	16768987	.	+	.	ID=Os10t0457400-01;Name=Os10t0457400-01;Locus_id=Os10g0457400;Note=Similar to shugoshin-1.;Transcript_evidence=AK063553 (DDBJ%2C Best hit);ORF_evidence=NP_001150510.1 (RefSeq);NIAS_FLcDNA=001-117-E05;Expression=AK063553;TENOR=Os10t0457400-01;KEGG=Os10t0457400-01
Chr10	irgsp1_rep	five_prime_UTR	16766843	16766937	.	+	.	Parent=Os10t0457400-01
Chr10	irgsp1_rep	CDS	16766938	16767214	.	+	0	Parent=Os10t0457400-01
Chr10	irgsp1_rep	CDS	16767312	16767351	.	+	2	Parent=Os10t0457400-01
Chr10	irgsp1_rep	CDS	16767474	16767561	.	+	1	Parent=Os10t0457400-01
Chr10	irgsp1_rep	CDS	16767690	16767713	.	+	0	Parent=Os10t0457400-01
Chr10	irgsp1_rep	CDS	16767827	16767895	.	+	0	Parent=Os10t0457400-01
Chr10	irgsp1_rep	CDS	16767999	16768221	.	+	0	Parent=Os10t0457400-01
Chr10	irgsp1_rep	CDS	16768312	16768378	.	+	2	Parent=Os10t0457400-01
Chr10	irgsp1_rep	CDS	16768468	16768735	.	+	1	Parent=Os10t0457400-01
Chr10	irgsp1_rep	three_prime_UTR	16768736	16768987	.	+	.	Parent=Os10t0457400-01
Chr10	irgsp1_rep	mRNA	16768975	16771729	.	-	.	ID=Os10t0457500-01;Name=Os10t0457500-01;Locus_id=Os10g0457500;Note=Similar to Yeast ham (Hydroxylaminopurine sensitivity) related protein 1 (HAM-1- like protein).;Transcript_evidence=AK059744 (DDBJ%2C Best hit);ORF_evidence=B6TNW8 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Ham1-like protein (IPR002637);NIAS_FLcDNA=006-202-H06;Expression=AK059744;TENOR=Os10t0457500-01;KEGG=Os10t0457500-01 (EC:3.6.1.19)
Chr10	irgsp1_rep	five_prime_UTR	16771640	16771729	.	-	.	Parent=Os10t0457500-01
Chr10	irgsp1_rep	CDS	16771504	16771639	.	-	0	Parent=Os10t0457500-01
Chr10	irgsp1_rep	CDS	16770747	16770811	.	-	2	Parent=Os10t0457500-01
Chr10	irgsp1_rep	CDS	16770588	16770651	.	-	0	Parent=Os10t0457500-01
Chr10	irgsp1_rep	CDS	16770493	16770502	.	-	2	Parent=Os10t0457500-01
Chr10	irgsp1_rep	CDS	16770251	16770282	.	-	1	Parent=Os10t0457500-01
Chr10	irgsp1_rep	CDS	16770026	16770138	.	-	2	Parent=Os10t0457500-01
Chr10	irgsp1_rep	CDS	16769423	16769499	.	-	0	Parent=Os10t0457500-01
Chr10	irgsp1_rep	CDS	16769228	16769348	.	-	1	Parent=Os10t0457500-01
Chr10	irgsp1_rep	three_prime_UTR	16768975	16769227	.	-	.	Parent=Os10t0457500-01
Chr10	irgsp1_rep	mRNA	16775389	16779538	.	+	.	ID=Os10t0457600-01;Name=Os10t0457600-01;Locus_id=Os10g0457600;Note=Similar to Acetyl-CoA C-acyltransferase (3-ketoacyl-coa thiolase b) (EC 2.3.1.16) (Fragment).;Transcript_evidence=AK072460 (DDBJ%2C Best hit);ORF_evidence=B6TIL6 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Thiolase (IPR002155),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039),Thiolase%2C active site (IPR020610),Thiolase%2C conserved site (IPR020613),Thiolase%2C acyl-enzyme intermediate active site (IPR020615),Thiolase%2C N-terminal (IPR020616),Thiolase%2C C-terminal (IPR020617);NIAS_FLcDNA=J023121H13;Expression=AK072460;TENOR=Os10t0457600-01;KEGG=Os10t0457600-01 (EC:2.3.1.16)
Chr10	irgsp1_rep	five_prime_UTR	16775389	16775618	.	+	.	Parent=Os10t0457600-01
Chr10	irgsp1_rep	CDS	16775619	16775705	.	+	0	Parent=Os10t0457600-01
Chr10	irgsp1_rep	CDS	16775801	16775877	.	+	0	Parent=Os10t0457600-01
Chr10	irgsp1_rep	CDS	16776899	16776983	.	+	1	Parent=Os10t0457600-01
Chr10	irgsp1_rep	CDS	16777096	16777222	.	+	0	Parent=Os10t0457600-01
Chr10	irgsp1_rep	CDS	16777312	16777410	.	+	2	Parent=Os10t0457600-01
Chr10	irgsp1_rep	CDS	16777508	16777575	.	+	2	Parent=Os10t0457600-01
Chr10	irgsp1_rep	CDS	16777679	16777786	.	+	0	Parent=Os10t0457600-01
Chr10	irgsp1_rep	CDS	16777892	16777969	.	+	0	Parent=Os10t0457600-01
Chr10	irgsp1_rep	CDS	16778086	16778218	.	+	0	Parent=Os10t0457600-01
Chr10	irgsp1_rep	CDS	16778303	16778399	.	+	2	Parent=Os10t0457600-01
Chr10	irgsp1_rep	CDS	16778630	16778753	.	+	1	Parent=Os10t0457600-01
Chr10	irgsp1_rep	CDS	16778833	16778941	.	+	0	Parent=Os10t0457600-01
Chr10	irgsp1_rep	CDS	16779064	16779147	.	+	2	Parent=Os10t0457600-01
Chr10	irgsp1_rep	CDS	16779236	16779345	.	+	2	Parent=Os10t0457600-01
Chr10	irgsp1_rep	three_prime_UTR	16779346	16779538	.	+	.	Parent=Os10t0457600-01
Chr10	irgsp1_rep	mRNA	16787618	16800247	.	+	.	ID=Os10t0457700-01;Name=Os10t0457700-01;Locus_id=Os10g0457700;Note=Similar to Chromatin remodeling complex subunit.;Transcript_evidence=AK068079 (DDBJ%2C Best hit);ORF_evidence=XP_002319663.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524);InterPro=SNF2-related (IPR000330),Helicase%2C C-terminal (IPR001650),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J013130J22;TENOR=Os10t0457700-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	16787618	16787803	.	+	.	Parent=Os10t0457700-01
Chr10	irgsp1_rep	five_prime_UTR	16788524	16788594	.	+	.	Parent=Os10t0457700-01
Chr10	irgsp1_rep	CDS	16788595	16788912	.	+	0	Parent=Os10t0457700-01
Chr10	irgsp1_rep	CDS	16789345	16789407	.	+	0	Parent=Os10t0457700-01
Chr10	irgsp1_rep	CDS	16789494	16789589	.	+	0	Parent=Os10t0457700-01
Chr10	irgsp1_rep	CDS	16789691	16789783	.	+	0	Parent=Os10t0457700-01
Chr10	irgsp1_rep	CDS	16790580	16790770	.	+	0	Parent=Os10t0457700-01
Chr10	irgsp1_rep	CDS	16790849	16791086	.	+	1	Parent=Os10t0457700-01
Chr10	irgsp1_rep	CDS	16791970	16792065	.	+	0	Parent=Os10t0457700-01
Chr10	irgsp1_rep	CDS	16792489	16792569	.	+	0	Parent=Os10t0457700-01
Chr10	irgsp1_rep	CDS	16792697	16793104	.	+	0	Parent=Os10t0457700-01
Chr10	irgsp1_rep	CDS	16793213	16793496	.	+	0	Parent=Os10t0457700-01
Chr10	irgsp1_rep	CDS	16793625	16793712	.	+	1	Parent=Os10t0457700-01
Chr10	irgsp1_rep	CDS	16793796	16793996	.	+	0	Parent=Os10t0457700-01
Chr10	irgsp1_rep	CDS	16794285	16794404	.	+	0	Parent=Os10t0457700-01
Chr10	irgsp1_rep	CDS	16794702	16794868	.	+	0	Parent=Os10t0457700-01
Chr10	irgsp1_rep	CDS	16796080	16796221	.	+	1	Parent=Os10t0457700-01
Chr10	irgsp1_rep	CDS	16796500	16796649	.	+	0	Parent=Os10t0457700-01
Chr10	irgsp1_rep	CDS	16796767	16796822	.	+	0	Parent=Os10t0457700-01
Chr10	irgsp1_rep	CDS	16796901	16797204	.	+	1	Parent=Os10t0457700-01
Chr10	irgsp1_rep	CDS	16797320	16797449	.	+	0	Parent=Os10t0457700-01
Chr10	irgsp1_rep	CDS	16797657	16797715	.	+	2	Parent=Os10t0457700-01
Chr10	irgsp1_rep	CDS	16797995	16798227	.	+	0	Parent=Os10t0457700-01
Chr10	irgsp1_rep	CDS	16799646	16799847	.	+	1	Parent=Os10t0457700-01
Chr10	irgsp1_rep	CDS	16799929	16800009	.	+	0	Parent=Os10t0457700-01
Chr10	irgsp1_rep	CDS	16800091	16800247	.	+	0	Parent=Os10t0457700-01
Chr10	irgsp1_rep	mRNA	16812453	16813744	.	+	.	ID=Os10t0457980-01;Name=Os10t0457980-01;Locus_id=Os10g0457980;Note=Non-protein coding transcript.;Transcript_evidence=AK241413 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065160C24;TENOR=Os10t0457980-01
Chr10	irgsp1_rep	exon	16812453	16813744	.	+	.	Parent=Os10t0457980-01
Chr10	irgsp1_rep	mRNA	16821151	16825037	.	+	.	ID=Os10t0458300-01;Name=Os10t0458300-01;Locus_id=Os10g0458300;Note=Domain of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK109739 (DDBJ%2C Best hit);ORF_evidence=Q94LS6 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=002-146-D04;Expression=AK109739;TENOR=Os10t0458300-01;KEGG=Os10t0458300-01
Chr10	irgsp1_rep	five_prime_UTR	16821151	16821168	.	+	.	Parent=Os10t0458300-01
Chr10	irgsp1_rep	CDS	16821169	16822582	.	+	0	Parent=Os10t0458300-01
Chr10	irgsp1_rep	CDS	16824733	16824821	.	+	2	Parent=Os10t0458300-01
Chr10	irgsp1_rep	three_prime_UTR	16824822	16825037	.	+	.	Parent=Os10t0458300-01
Chr10	irgsp1_rep	mRNA	16835852	16836882	.	-	.	ID=Os10t0458600-01;Name=Os10t0458600-01;Locus_id=Os10g0458600;Note=Conserved hypothetical protein.;Transcript_evidence=AK241663 (DDBJ%2C Best hit);ORF_evidence=Q94LS9 (UniProt);NIAS_FLcDNA=J065191L10;TENOR=Os10t0458600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	16836655	16836882	.	-	0	Parent=Os10t0458600-01
Chr10	irgsp1_rep	three_prime_UTR	16836214	16836654	.	-	.	Parent=Os10t0458600-01
Chr10	irgsp1_rep	three_prime_UTR	16835852	16836112	.	-	.	Parent=Os10t0458600-01
Chr10	irgsp1_rep	mRNA	16840028	16845597	.	+	.	ID=Os10t0458700-01;Name=Os10t0458700-01;Locus_id=Os10g0458700;Note=Hypothetical conserved gene.;Transcript_evidence=AK071427 (DDBJ%2C Best hit);ORF_evidence=B8BHA5 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: ribonuclease H activity (GO:0004523);InterPro=Ribonuclease H domain (IPR002156),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J023098H16;Expression=AK071427;TENOR=Os10t0458700-01;KEGG=Os10t0458700-01
Chr10	irgsp1_rep	five_prime_UTR	16840028	16840251	.	+	.	Parent=Os10t0458700-01
Chr10	irgsp1_rep	five_prime_UTR	16841062	16841077	.	+	.	Parent=Os10t0458700-01
Chr10	irgsp1_rep	CDS	16841078	16841173	.	+	0	Parent=Os10t0458700-01
Chr10	irgsp1_rep	CDS	16841762	16841920	.	+	0	Parent=Os10t0458700-01
Chr10	irgsp1_rep	CDS	16842083	16842184	.	+	0	Parent=Os10t0458700-01
Chr10	irgsp1_rep	CDS	16842249	16842341	.	+	0	Parent=Os10t0458700-01
Chr10	irgsp1_rep	CDS	16842888	16842977	.	+	0	Parent=Os10t0458700-01
Chr10	irgsp1_rep	CDS	16843993	16844082	.	+	0	Parent=Os10t0458700-01
Chr10	irgsp1_rep	CDS	16844166	16844309	.	+	0	Parent=Os10t0458700-01
Chr10	irgsp1_rep	CDS	16844715	16844822	.	+	0	Parent=Os10t0458700-01
Chr10	irgsp1_rep	CDS	16845087	16845138	.	+	0	Parent=Os10t0458700-01
Chr10	irgsp1_rep	CDS	16845218	16845252	.	+	2	Parent=Os10t0458700-01
Chr10	irgsp1_rep	three_prime_UTR	16845253	16845597	.	+	.	Parent=Os10t0458700-01
Chr10	irgsp1_rep	mRNA	16840054	16845770	.	+	.	ID=Os10t0458700-02;Name=Os10t0458700-02;Locus_id=Os10g0458700;Note=Ribonuclease H domain containing protein.;Transcript_evidence=AK101347 (DDBJ%2C Best hit);ORF_evidence=B8BHA5 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: ribonuclease H activity (GO:0004523);InterPro=Ribonuclease H domain (IPR002156),Ribonuclease H1%2C N-terminal (IPR011320),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J033034L02;Expression=AK101347;TENOR=Os10t0458700-02;KEGG=Os10t0458700-02
Chr10	irgsp1_rep	five_prime_UTR	16840054	16840251	.	+	.	Parent=Os10t0458700-02
Chr10	irgsp1_rep	five_prime_UTR	16841062	16841077	.	+	.	Parent=Os10t0458700-02
Chr10	irgsp1_rep	CDS	16841078	16841173	.	+	0	Parent=Os10t0458700-02
Chr10	irgsp1_rep	CDS	16841762	16841920	.	+	0	Parent=Os10t0458700-02
Chr10	irgsp1_rep	CDS	16842083	16842184	.	+	0	Parent=Os10t0458700-02
Chr10	irgsp1_rep	CDS	16842249	16842341	.	+	0	Parent=Os10t0458700-02
Chr10	irgsp1_rep	CDS	16842888	16842977	.	+	0	Parent=Os10t0458700-02
Chr10	irgsp1_rep	CDS	16843993	16844085	.	+	0	Parent=Os10t0458700-02
Chr10	irgsp1_rep	CDS	16844166	16844309	.	+	0	Parent=Os10t0458700-02
Chr10	irgsp1_rep	CDS	16844715	16844822	.	+	0	Parent=Os10t0458700-02
Chr10	irgsp1_rep	CDS	16845087	16845138	.	+	0	Parent=Os10t0458700-02
Chr10	irgsp1_rep	CDS	16845218	16845252	.	+	2	Parent=Os10t0458700-02
Chr10	irgsp1_rep	three_prime_UTR	16845253	16845770	.	+	.	Parent=Os10t0458700-02
Chr10	irgsp1_rep	mRNA	16852034	16853554	.	-	.	ID=Os10t0458900-00;Name=Os10t0458900-00;Locus_id=Os10g0458900;Note=Exostosin-like family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=D0V2A6 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);TENOR=Os10t0458900-00;KEGG=Os10t0458900-00
Chr10	irgsp1_rep	CDS	16852034	16853554	.	-	0	Parent=Os10t0458900-00
Chr10	irgsp1_rep	mRNA	16861849	16863370	.	-	.	ID=Os10t0459300-00;Name=Os10t0459300-00;Locus_id=Os10g0459300;Note=Exostosin-like family protein.;Transcript_evidence=tplb0047d21 (Wheat FLcDNA);ORF_evidence=NP_001150032.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);TENOR=Os10t0459300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	16863349	16863370	.	-	.	Parent=Os10t0459300-00
Chr10	irgsp1_rep	CDS	16861849	16863348	.	-	0	Parent=Os10t0459300-00
Chr10	irgsp1_rep	mRNA	16885929	16886634	.	-	.	ID=Os10t0459550-00;Name=Os10t0459550-00;Locus_id=Os10g0459550;Note=Hypothetical conserved gene.;Transcript_evidence=FP099238 (DDBJ);ORF_evidence=Q7X6R5 (UniProt);TENOR=Os10t0459550-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	16886349	16886634	.	-	.	Parent=Os10t0459550-00
Chr10	irgsp1_rep	CDS	16885929	16886348	.	-	0	Parent=Os10t0459550-00
Chr10	irgsp1_rep	mRNA	16892830	16894805	.	+	.	ID=Os10t0459600-01;Name=Os10t0459600-01;Locus_id=Os10g0459600;Note=Similar to Xyloglucan galactosyltransferase KATAMARI 1 (EC 2.4.1.-) (MURUS3 protein).;Transcript_evidence=AK110989 (DDBJ%2C Best hit);ORF_evidence=B6SS28 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);NIAS_FLcDNA=002-174-D08;Expression=AK110989;TENOR=Os10t0459600-01;KEGG=Os10t0459600-01
Chr10	irgsp1_rep	five_prime_UTR	16892830	16892956	.	+	.	Parent=Os10t0459600-01
Chr10	irgsp1_rep	CDS	16892957	16894732	.	+	0	Parent=Os10t0459600-01
Chr10	irgsp1_rep	three_prime_UTR	16894733	16894805	.	+	.	Parent=Os10t0459600-01
Chr10	irgsp1_rep	mRNA	16896684	16898801	.	-	.	ID=Os10t0459700-01;Name=Os10t0459700-01;Locus_id=Os10g0459700;Note=Similar to Xyloglucan galactosyltransferase KATAMARI 1 (EC 2.4.1.-) (MURUS3 protein).;Transcript_evidence=AK110328 (DDBJ%2C Best hit);ORF_evidence=B6SS28 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);NIAS_FLcDNA=002-164-D09;Expression=AK110328;TENOR=Os10t0459700-01;KEGG=Os10t0459700-01
Chr10	irgsp1_rep	five_prime_UTR	16898684	16898801	.	-	.	Parent=Os10t0459700-01
Chr10	irgsp1_rep	CDS	16896821	16898683	.	-	0	Parent=Os10t0459700-01
Chr10	irgsp1_rep	three_prime_UTR	16896684	16896820	.	-	.	Parent=Os10t0459700-01
Chr10	irgsp1_rep	mRNA	16909037	16910582	.	-	.	ID=Os10t0459900-01;Name=Os10t0459900-01;Locus_id=Os10g0459900;Note=Conserved hypothetical protein.;Transcript_evidence=AK110981 (DDBJ%2C Best hit);ORF_evidence=B9G643 (UniProt);NIAS_FLcDNA=002-174-C09;TENOR=Os10t0459900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	16910432	16910582	.	-	.	Parent=Os10t0459900-01
Chr10	irgsp1_rep	CDS	16909640	16910431	.	-	0	Parent=Os10t0459900-01
Chr10	irgsp1_rep	three_prime_UTR	16909037	16909639	.	-	.	Parent=Os10t0459900-01
Chr10	irgsp1_rep	mRNA	16909692	16910527	.	-	.	ID=Os10t0459900-02;Name=Os10t0459900-02;Locus_id=Os10g0459900;Note=Conserved hypothetical protein.;Transcript_evidence=AK108215 (DDBJ%2C Best hit);ORF_evidence=B9G643 (UniProt);NIAS_FLcDNA=002-140-E03;TENOR=Os10t0459900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	16910432	16910527	.	-	.	Parent=Os10t0459900-02
Chr10	irgsp1_rep	CDS	16909692	16910431	.	-	0	Parent=Os10t0459900-02
Chr10	irgsp1_rep	mRNA	16909752	16912514	.	+	.	ID=Os10t0460000-01;Name=Os10t0460000-01;Locus_id=Os10g0460000;Note=Conserved hypothetical protein.;Transcript_evidence=AK241672 (DDBJ%2C Best hit);ORF_evidence=NP_001176192.1 (RefSeq);NIAS_FLcDNA=J065192F03;TENOR=Os10t0460000-01;KEGG=Os10t0460000-01
Chr10	irgsp1_rep	five_prime_UTR	16909752	16910328	.	+	.	Parent=Os10t0460000-01
Chr10	irgsp1_rep	five_prime_UTR	16911006	16911897	.	+	.	Parent=Os10t0460000-01
Chr10	irgsp1_rep	CDS	16911898	16912353	.	+	0	Parent=Os10t0460000-01
Chr10	irgsp1_rep	three_prime_UTR	16912354	16912514	.	+	.	Parent=Os10t0460000-01
Chr10	irgsp1_rep	mRNA	16938371	16943415	.	+	.	ID=Os10t0460500-01;Name=Os10t0460500-01;Locus_id=Os10g0460500;Note=Conserved hypothetical protein.;Transcript_evidence=AK070542 (DDBJ%2C Best hit);ORF_evidence=Q8LNR8 (UniProt);NIAS_FLcDNA=J023055H02;Expression=AK070542;TENOR=Os10t0460500-01;KEGG=Os10t0460500-01
Chr10	irgsp1_rep	five_prime_UTR	16938371	16938461	.	+	.	Parent=Os10t0460500-01
Chr10	irgsp1_rep	five_prime_UTR	16941053	16941057	.	+	.	Parent=Os10t0460500-01
Chr10	irgsp1_rep	CDS	16941058	16941267	.	+	0	Parent=Os10t0460500-01
Chr10	irgsp1_rep	CDS	16941359	16941738	.	+	0	Parent=Os10t0460500-01
Chr10	irgsp1_rep	CDS	16941821	16942093	.	+	1	Parent=Os10t0460500-01
Chr10	irgsp1_rep	CDS	16942225	16942285	.	+	1	Parent=Os10t0460500-01
Chr10	irgsp1_rep	three_prime_UTR	16942286	16942556	.	+	.	Parent=Os10t0460500-01
Chr10	irgsp1_rep	three_prime_UTR	16942642	16942820	.	+	.	Parent=Os10t0460500-01
Chr10	irgsp1_rep	three_prime_UTR	16942962	16943415	.	+	.	Parent=Os10t0460500-01
Chr10	irgsp1_rep	mRNA	16945182	16946122	.	+	.	ID=Os10t0460733-00;Name=Os10t0460733-00;Locus_id=Os10g0460733;Note=Similar to H0418A01.5 protein.;Transcript_evidence=BT037367 (DDBJ);ORF_evidence=Q01J63 (UniProt);GO=Biological Process: transposition%2C DNA-mediated (GO:0006313),Molecular Function: DNA binding (GO:0003677),Molecular Function: transposase activity (GO:0004803);InterPro=Transposase%2C IS4-like (IPR002559);TENOR=Os10t0460733-00
Chr10	irgsp1_rep	five_prime_UTR	16945182	16945228	.	+	.	Parent=Os10t0460733-00
Chr10	irgsp1_rep	CDS	16945229	16946122	.	+	0	Parent=Os10t0460733-00
Chr10	irgsp1_rep	mRNA	16945421	16946774	.	-	.	ID=Os10t0460766-00;Name=Os10t0460766-00;Locus_id=Os10g0460766;Note=Hypothetical protein.;Transcript_evidence=tplb0043a14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0460766-00
Chr10	irgsp1_rep	five_prime_UTR	16946769	16946774	.	-	.	Parent=Os10t0460766-00
Chr10	irgsp1_rep	CDS	16946517	16946768	.	-	0	Parent=Os10t0460766-00
Chr10	irgsp1_rep	three_prime_UTR	16946461	16946516	.	-	.	Parent=Os10t0460766-00
Chr10	irgsp1_rep	three_prime_UTR	16945421	16946348	.	-	.	Parent=Os10t0460766-00
Chr10	irgsp1_rep	mRNA	16947073	16947687	.	+	.	ID=Os10t0460800-00;Name=Os10t0460800-00;Locus_id=Os10g0460800;Note=Similar to H0418A01.5 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01J63 (UniProt);TENOR=Os10t0460800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	16947073	16947687	.	+	0	Parent=Os10t0460800-00
Chr10	irgsp1_rep	mRNA	16951041	16956952	.	-	.	ID=Os10t0460900-00;Name=Os10t0460900-00;Locus_id=Os10g0460900;Note=Similar to cDNA clone:J013158D14%2C full insert sequence.;Transcript_evidence=CT834444 (DDBJ%2C Best hit);ORF_evidence=Q109K8 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide TPR-1 (IPR001440),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);TENOR=Os10t0460900-00;KEGG=Os10t0460900-00
Chr10	irgsp1_rep	five_prime_UTR	16956918	16956952	.	-	.	Parent=Os10t0460900-00
Chr10	irgsp1_rep	CDS	16956654	16956917	.	-	0	Parent=Os10t0460900-00
Chr10	irgsp1_rep	CDS	16955841	16955971	.	-	0	Parent=Os10t0460900-00
Chr10	irgsp1_rep	CDS	16955358	16955407	.	-	1	Parent=Os10t0460900-00
Chr10	irgsp1_rep	CDS	16954335	16954606	.	-	2	Parent=Os10t0460900-00
Chr10	irgsp1_rep	CDS	16951853	16951999	.	-	0	Parent=Os10t0460900-00
Chr10	irgsp1_rep	CDS	16951189	16951470	.	-	0	Parent=Os10t0460900-00
Chr10	irgsp1_rep	three_prime_UTR	16951041	16951188	.	-	.	Parent=Os10t0460900-00
Chr10	irgsp1_rep	mRNA	16961640	16976831	.	-	.	ID=Os10t0461100-01;Name=Os10t0461100-01;Locus_id=Os10g0461100;Note=Similar to Keratin%2C type II cytoskeletal 1 (Cytokeratin 1) (K1) (CK 1) (67 kDa cytokeratin) (Hair alpha protein).;Transcript_evidence=AK065396 (DDBJ%2C Best hit);ORF_evidence=Q109L1 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: oxygen evolving complex (GO:0009654),Cellular Component: extrinsic to membrane (GO:0019898),Molecular Function: calcium ion binding (GO:0005509);InterPro=Photosystem II PsbP%2C oxygen evolving complex (IPR002683),Mog1/PsbP%2C alpha/beta/alpha sandwich (IPR016123),Mog1/PsbP/DUF1795%2C alpha/beta/alpha sandwich (IPR016124);NIAS_FLcDNA=J013023F13;Expression=AK065396;TENOR=Os10t0461100-01;KEGG=Os10t0461100-01
Chr10	irgsp1_rep	five_prime_UTR	16976749	16976831	.	-	.	Parent=Os10t0461100-01
Chr10	irgsp1_rep	CDS	16976485	16976748	.	-	0	Parent=Os10t0461100-01
Chr10	irgsp1_rep	CDS	16975672	16975802	.	-	0	Parent=Os10t0461100-01
Chr10	irgsp1_rep	CDS	16975189	16975238	.	-	1	Parent=Os10t0461100-01
Chr10	irgsp1_rep	CDS	16974166	16974437	.	-	2	Parent=Os10t0461100-01
Chr10	irgsp1_rep	CDS	16971690	16971836	.	-	0	Parent=Os10t0461100-01
Chr10	irgsp1_rep	CDS	16969824	16969954	.	-	0	Parent=Os10t0461100-01
Chr10	irgsp1_rep	CDS	16963743	16963837	.	-	1	Parent=Os10t0461100-01
Chr10	irgsp1_rep	CDS	16963522	16963604	.	-	2	Parent=Os10t0461100-01
Chr10	irgsp1_rep	CDS	16963313	16963435	.	-	0	Parent=Os10t0461100-01
Chr10	irgsp1_rep	CDS	16963142	16963213	.	-	0	Parent=Os10t0461100-01
Chr10	irgsp1_rep	CDS	16962336	16962432	.	-	0	Parent=Os10t0461100-01
Chr10	irgsp1_rep	CDS	16962054	16962149	.	-	2	Parent=Os10t0461100-01
Chr10	irgsp1_rep	CDS	16961927	16961979	.	-	2	Parent=Os10t0461100-01
Chr10	irgsp1_rep	three_prime_UTR	16961640	16961926	.	-	.	Parent=Os10t0461100-01
Chr10	irgsp1_rep	mRNA	16961769	16976795	.	-	.	ID=Os10t0461100-02;Name=Os10t0461100-02;Locus_id=Os10g0461100;Note=Similar to PsbP family protein%2C expressed.;Transcript_evidence=AK072202 (DDBJ%2C Best hit),AK243344 (DDBJ%2C Best hit);ORF_evidence=Q109L1 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: oxygen evolving complex (GO:0009654),Cellular Component: extrinsic to membrane (GO:0019898),Molecular Function: calcium ion binding (GO:0005509);InterPro=Photosystem II PsbP%2C oxygen evolving complex (IPR002683),Mog1/PsbP%2C alpha/beta/alpha sandwich (IPR016123),Mog1/PsbP/DUF1795%2C alpha/beta/alpha sandwich (IPR016124);NIAS_FLcDNA=J013158D14,J100059O14;Expression=AK072202;TENOR=Os10t0461100-02;KEGG=Os10t0461100-02
Chr10	irgsp1_rep	five_prime_UTR	16976749	16976795	.	-	.	Parent=Os10t0461100-02
Chr10	irgsp1_rep	CDS	16976485	16976748	.	-	0	Parent=Os10t0461100-02
Chr10	irgsp1_rep	CDS	16975672	16975802	.	-	0	Parent=Os10t0461100-02
Chr10	irgsp1_rep	CDS	16975189	16975238	.	-	1	Parent=Os10t0461100-02
Chr10	irgsp1_rep	CDS	16974166	16974437	.	-	2	Parent=Os10t0461100-02
Chr10	irgsp1_rep	CDS	16971690	16971836	.	-	0	Parent=Os10t0461100-02
Chr10	irgsp1_rep	CDS	16969824	16969954	.	-	0	Parent=Os10t0461100-02
Chr10	irgsp1_rep	CDS	16963743	16963837	.	-	1	Parent=Os10t0461100-02
Chr10	irgsp1_rep	CDS	16963522	16963604	.	-	2	Parent=Os10t0461100-02
Chr10	irgsp1_rep	CDS	16963313	16963435	.	-	0	Parent=Os10t0461100-02
Chr10	irgsp1_rep	CDS	16963142	16963213	.	-	0	Parent=Os10t0461100-02
Chr10	irgsp1_rep	CDS	16962336	16962432	.	-	0	Parent=Os10t0461100-02
Chr10	irgsp1_rep	CDS	16962043	16962149	.	-	2	Parent=Os10t0461100-02
Chr10	irgsp1_rep	three_prime_UTR	16961769	16962042	.	-	.	Parent=Os10t0461100-02
Chr10	irgsp1_rep	mRNA	16961697	16963215	.	-	.	ID=Os10t0461100-04;Name=Os10t0461100-04;Locus_id=Os10g0461100;Note=Similar to PsbP family protein%2C expressed.;Transcript_evidence=AK059274 (DDBJ%2C Best hit);ORF_evidence=Q109L1 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: oxygen evolving complex (GO:0009654),Cellular Component: extrinsic to membrane (GO:0019898),Molecular Function: calcium ion binding (GO:0005509);InterPro=Photosystem II PsbP%2C oxygen evolving complex (IPR002683),Mog1/PsbP%2C alpha/beta/alpha sandwich (IPR016123),Mog1/PsbP/DUF1795%2C alpha/beta/alpha sandwich (IPR016124);NIAS_FLcDNA=001-025-C02;Expression=AK059274;TENOR=Os10t0461100-04;KEGG=Os10t0461100-04
Chr10	irgsp1_rep	five_prime_UTR	16963214	16963215	.	-	.	Parent=Os10t0461100-04
Chr10	irgsp1_rep	CDS	16963142	16963213	.	-	0	Parent=Os10t0461100-04
Chr10	irgsp1_rep	CDS	16962336	16962432	.	-	0	Parent=Os10t0461100-04
Chr10	irgsp1_rep	CDS	16962054	16962149	.	-	2	Parent=Os10t0461100-04
Chr10	irgsp1_rep	CDS	16961927	16961979	.	-	2	Parent=Os10t0461100-04
Chr10	irgsp1_rep	three_prime_UTR	16961697	16961926	.	-	.	Parent=Os10t0461100-04
Chr10	irgsp1_rep	mRNA	16981514	16983032	.	-	.	ID=Os10t0461400-01;Name=Os10t0461400-01;Locus_id=Os10g0461400;Note=Similar to PsbP family protein%2C expressed.;Transcript_evidence=AK059274 (DDBJ%2C Best hit);ORF_evidence=Q109L1 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: oxygen evolving complex (GO:0009654),Cellular Component: extrinsic to membrane (GO:0019898),Molecular Function: calcium ion binding (GO:0005509);InterPro=Photosystem II PsbP%2C oxygen evolving complex (IPR002683),Mog1/PsbP%2C alpha/beta/alpha sandwich (IPR016123),Mog1/PsbP/DUF1795%2C alpha/beta/alpha sandwich (IPR016124);NIAS_FLcDNA=001-025-C02;Expression=AK059274;TENOR=Os10t0461400-01;KEGG=Os10t0461400-01
Chr10	irgsp1_rep	five_prime_UTR	16983031	16983032	.	-	.	Parent=Os10t0461400-01
Chr10	irgsp1_rep	CDS	16982959	16983030	.	-	0	Parent=Os10t0461400-01
Chr10	irgsp1_rep	CDS	16982153	16982249	.	-	0	Parent=Os10t0461400-01
Chr10	irgsp1_rep	CDS	16981871	16981966	.	-	2	Parent=Os10t0461400-01
Chr10	irgsp1_rep	CDS	16981744	16981796	.	-	2	Parent=Os10t0461400-01
Chr10	irgsp1_rep	three_prime_UTR	16981514	16981743	.	-	.	Parent=Os10t0461400-01
Chr10	irgsp1_rep	mRNA	17005371	17005938	.	+	.	ID=Os10t0462100-01;Name=Os10t0462100-01;Locus_id=Os10g0462100;Note=Conserved hypothetical protein.;Transcript_evidence=AK066946 (DDBJ%2C Best hit);ORF_evidence=Q852D6 (UniProt);NIAS_FLcDNA=J013089G05;Expression=AK066946;TENOR=Os10t0462100-01;KEGG=Os10t0462100-01
Chr10	irgsp1_rep	CDS	17005371	17005766	.	+	0	Parent=Os10t0462100-01
Chr10	irgsp1_rep	three_prime_UTR	17005767	17005938	.	+	.	Parent=Os10t0462100-01
Chr10	irgsp1_rep	mRNA	17006001	17006724	.	-	.	ID=Os10t0462200-01;Name=Os10t0462200-01;Locus_id=Os10g0462200;Note=Conserved hypothetical protein.;Transcript_evidence=AK062813 (DDBJ%2C Best hit);ORF_evidence=B9G647 (UniProt);NIAS_FLcDNA=001-107-E04;Expression=AK062813;TENOR=Os10t0462200-01;KEGG=Os10t0462200-01
Chr10	irgsp1_rep	five_prime_UTR	17006557	17006724	.	-	.	Parent=Os10t0462200-01
Chr10	irgsp1_rep	CDS	17006242	17006556	.	-	0	Parent=Os10t0462200-01
Chr10	irgsp1_rep	three_prime_UTR	17006001	17006241	.	-	.	Parent=Os10t0462200-01
Chr10	irgsp1_rep	mRNA	17007682	17010916	.	-	.	ID=Os10t0462300-01;Name=Os10t0462300-01;Locus_id=Os10g0462300;Note=Hypothetical conserved gene.;Transcript_evidence=AK073745 (DDBJ%2C Best hit);ORF_evidence=B9G647 (UniProt);NIAS_FLcDNA=J033066B10;Expression=AK073745;TENOR=Os10t0462300-01;KEGG=Os10t0462300-01
Chr10	irgsp1_rep	five_prime_UTR	17010916	17010916	.	-	.	Parent=Os10t0462300-01
Chr10	irgsp1_rep	CDS	17009759	17010915	.	-	0	Parent=Os10t0462300-01
Chr10	irgsp1_rep	CDS	17009515	17009625	.	-	1	Parent=Os10t0462300-01
Chr10	irgsp1_rep	CDS	17007896	17008964	.	-	1	Parent=Os10t0462300-01
Chr10	irgsp1_rep	three_prime_UTR	17007682	17007895	.	-	.	Parent=Os10t0462300-01
Chr10	irgsp1_rep	mRNA	17025763	17027738	.	+	.	ID=Os10t0462500-01;Name=Os10t0462500-01;Locus_id=Os10g0462500;Note=Conserved hypothetical protein.;Transcript_evidence=AK108436 (DDBJ%2C Best hit);ORF_evidence=Q8H900 (UniProt);NIAS_FLcDNA=002-143-B05;Expression=AK108436;TENOR=Os10t0462500-01;KEGG=Os10t0462500-01
Chr10	irgsp1_rep	five_prime_UTR	17025763	17025764	.	+	.	Parent=Os10t0462500-01
Chr10	irgsp1_rep	CDS	17025765	17025904	.	+	0	Parent=Os10t0462500-01
Chr10	irgsp1_rep	CDS	17027397	17027442	.	+	1	Parent=Os10t0462500-01
Chr10	irgsp1_rep	three_prime_UTR	17027443	17027738	.	+	.	Parent=Os10t0462500-01
Chr10	irgsp1_rep	mRNA	17033759	17035140	.	-	.	ID=Os10t0462600-01;Name=Os10t0462600-01;Locus_id=Os10g0462600;Note=Conserved hypothetical protein.;Transcript_evidence=AK068897 (DDBJ%2C Best hit);ORF_evidence=Q8H901 (UniProt);NIAS_FLcDNA=J013170C04;TENOR=Os10t0462600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	17034694	17035140	.	-	0	Parent=Os10t0462600-01
Chr10	irgsp1_rep	three_prime_UTR	17033759	17034693	.	-	.	Parent=Os10t0462600-01
Chr10	irgsp1_rep	mRNA	17028165	17035133	.	-	.	ID=Os10t0462600-02;Name=Os10t0462600-02;Locus_id=Os10g0462600;Note=Conserved hypothetical protein.;Transcript_evidence=AK066108 (DDBJ%2C Best hit);ORF_evidence=Q8H901 (UniProt);NIAS_FLcDNA=J013052H09;TENOR=Os10t0462600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	17035132	17035133	.	-	.	Parent=Os10t0462600-02
Chr10	irgsp1_rep	CDS	17034754	17035131	.	-	0	Parent=Os10t0462600-02
Chr10	irgsp1_rep	CDS	17030828	17030900	.	-	0	Parent=Os10t0462600-02
Chr10	irgsp1_rep	CDS	17028540	17028550	.	-	2	Parent=Os10t0462600-02
Chr10	irgsp1_rep	three_prime_UTR	17028165	17028539	.	-	.	Parent=Os10t0462600-02
Chr10	irgsp1_rep	mRNA	17040029	17047589	.	+	.	ID=Os10t0462800-01;Name=Os10t0462800-01;Locus_id=Os10g0462800;RAP-DB Gene Symbol Synonym(s)=WSL3%2C OspTAC3%2C pTAC3;RAP-DB Gene Name Synonym(s)=WHITE STRIPE LEAF 3%2C white stripe leaf 3%2C plastid transcriptionally active Chromosome protein 3%2C plastid TAC protein 3;CGSNL Gene Symbol=WSL3;CGSNL Gene Name=WHITE STRIPE LEAF 3;Oryzabase Gene Symbol Synonym(s)=OspTAC3%2C pTAC3%2C OsPAP1%2C PAP1;Oryzabase Gene Name Synonym(s)=white stripe leaf 3%2C plastid transcriptionally active Chromosome protein 3%2C plastid TAC protein 3%2C PEP-associated protein 1%2C plastid-encoded plastid polymerase-associated protein 1;Note=Component of the plastid-encoded plastid RNA polymerase (PEP)%2C peripheral subunit of PEP complex%2C OsPAP1/OspTAC3%2C Early chloroplast development;Transcript_evidence=XM_015759431;ORF_evidence=Q8H902;InterPro=SAP domain (IPR003034);Manual Curation=September 8%2C 2016;Literature_PMID=27573887;Oryzabase=21319;TENOR=Os10t0462800-01;KEGG=Os10t0462800-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	17040029	17040047	.	+	.	Parent=Os10t0462800-01
Chr10	irgsp1_rep	CDS	17040048	17040449	.	+	0	Parent=Os10t0462800-01
Chr10	irgsp1_rep	CDS	17041832	17042003	.	+	0	Parent=Os10t0462800-01
Chr10	irgsp1_rep	CDS	17042081	17042298	.	+	2	Parent=Os10t0462800-01
Chr10	irgsp1_rep	CDS	17042657	17042720	.	+	0	Parent=Os10t0462800-01
Chr10	irgsp1_rep	CDS	17042915	17042987	.	+	2	Parent=Os10t0462800-01
Chr10	irgsp1_rep	CDS	17043460	17043537	.	+	1	Parent=Os10t0462800-01
Chr10	irgsp1_rep	CDS	17043739	17043896	.	+	1	Parent=Os10t0462800-01
Chr10	irgsp1_rep	CDS	17044388	17044556	.	+	2	Parent=Os10t0462800-01
Chr10	irgsp1_rep	CDS	17044697	17045156	.	+	1	Parent=Os10t0462800-01
Chr10	irgsp1_rep	CDS	17045264	17045644	.	+	0	Parent=Os10t0462800-01
Chr10	irgsp1_rep	CDS	17046000	17046203	.	+	0	Parent=Os10t0462800-01
Chr10	irgsp1_rep	CDS	17046484	17046617	.	+	0	Parent=Os10t0462800-01
Chr10	irgsp1_rep	CDS	17047103	17047286	.	+	1	Parent=Os10t0462800-01
Chr10	irgsp1_rep	three_prime_UTR	17047287	17047589	.	+	.	Parent=Os10t0462800-01
Chr10	irgsp1_rep	mRNA	17048051	17053406	.	+	.	ID=Os10t0462900-01;Name=Os10t0462900-01;Locus_id=Os10g0462900;Oryzabase Gene Name Synonym(s)=58K antigen%2C HypB protein;Note=Similar to mitochondrial chaperonin-60.;Transcript_evidence=AK069617 (DDBJ%2C Best hit);ORF_evidence=NP_001105716.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Biological Process: protein refolding (GO:0042026),Biological Process: cellular protein metabolic process (GO:0044267),Cellular Component: cytoplasm (GO:0005737),Molecular Function: ATP binding (GO:0005524);InterPro=Chaperonin Cpn60 (IPR001844),Chaperonin Cpn60/TCP-1 (IPR002423),Chaperonin Cpn60%2C conserved site (IPR018370);NIAS_FLcDNA=J023019K12;Oryzabase=16683;Expression=AK069617;TENOR=Os10t0462900-01;KEGG=Os10t0462900-01
Chr10	irgsp1_rep	five_prime_UTR	17048051	17048228	.	+	.	Parent=Os10t0462900-01
Chr10	irgsp1_rep	CDS	17048229	17048266	.	+	0	Parent=Os10t0462900-01
Chr10	irgsp1_rep	CDS	17048385	17048409	.	+	1	Parent=Os10t0462900-01
Chr10	irgsp1_rep	CDS	17049013	17049144	.	+	0	Parent=Os10t0462900-01
Chr10	irgsp1_rep	CDS	17049448	17049607	.	+	0	Parent=Os10t0462900-01
Chr10	irgsp1_rep	CDS	17050180	17050355	.	+	2	Parent=Os10t0462900-01
Chr10	irgsp1_rep	CDS	17050448	17050543	.	+	0	Parent=Os10t0462900-01
Chr10	irgsp1_rep	CDS	17050677	17050781	.	+	0	Parent=Os10t0462900-01
Chr10	irgsp1_rep	CDS	17050864	17050950	.	+	0	Parent=Os10t0462900-01
Chr10	irgsp1_rep	CDS	17051040	17051129	.	+	0	Parent=Os10t0462900-01
Chr10	irgsp1_rep	CDS	17051199	17051279	.	+	0	Parent=Os10t0462900-01
Chr10	irgsp1_rep	CDS	17051366	17051434	.	+	0	Parent=Os10t0462900-01
Chr10	irgsp1_rep	CDS	17051579	17051656	.	+	0	Parent=Os10t0462900-01
Chr10	irgsp1_rep	CDS	17051744	17051839	.	+	0	Parent=Os10t0462900-01
Chr10	irgsp1_rep	CDS	17052147	17052246	.	+	0	Parent=Os10t0462900-01
Chr10	irgsp1_rep	CDS	17052374	17052477	.	+	2	Parent=Os10t0462900-01
Chr10	irgsp1_rep	CDS	17052562	17052667	.	+	0	Parent=Os10t0462900-01
Chr10	irgsp1_rep	CDS	17052761	17052839	.	+	2	Parent=Os10t0462900-01
Chr10	irgsp1_rep	CDS	17053027	17053129	.	+	1	Parent=Os10t0462900-01
Chr10	irgsp1_rep	three_prime_UTR	17053130	17053406	.	+	.	Parent=Os10t0462900-01
Chr10	irgsp1_rep	mRNA	17048122	17053406	.	+	.	ID=Os10t0462900-02;Name=Os10t0462900-02;Locus_id=Os10g0462900;Oryzabase Gene Name Synonym(s)=58K antigen%2C HypB protein;Note=Similar to mitochondrial chaperonin-60.;Transcript_evidence=AK119623 (DDBJ%2C Best hit);ORF_evidence=NP_001105716.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Biological Process: protein refolding (GO:0042026),Biological Process: cellular protein metabolic process (GO:0044267),Cellular Component: cytoplasm (GO:0005737),Molecular Function: ATP binding (GO:0005524);InterPro=Chaperonin Cpn60 (IPR001844),Chaperonin Cpn60/TCP-1 (IPR002423),Chaperonin Cpn60%2C conserved site (IPR018370);NIAS_FLcDNA=002-117-H08;Oryzabase=16683;Expression=AK119623;TENOR=Os10t0462900-02;KEGG=Os10t0462900-02
Chr10	irgsp1_rep	five_prime_UTR	17048122	17048228	.	+	.	Parent=Os10t0462900-02
Chr10	irgsp1_rep	CDS	17048229	17048266	.	+	0	Parent=Os10t0462900-02
Chr10	irgsp1_rep	CDS	17048385	17048409	.	+	1	Parent=Os10t0462900-02
Chr10	irgsp1_rep	CDS	17049013	17049144	.	+	0	Parent=Os10t0462900-02
Chr10	irgsp1_rep	CDS	17049448	17049607	.	+	0	Parent=Os10t0462900-02
Chr10	irgsp1_rep	CDS	17050180	17050355	.	+	2	Parent=Os10t0462900-02
Chr10	irgsp1_rep	CDS	17050448	17050543	.	+	0	Parent=Os10t0462900-02
Chr10	irgsp1_rep	CDS	17050677	17050781	.	+	0	Parent=Os10t0462900-02
Chr10	irgsp1_rep	CDS	17050864	17050950	.	+	0	Parent=Os10t0462900-02
Chr10	irgsp1_rep	CDS	17051040	17051129	.	+	0	Parent=Os10t0462900-02
Chr10	irgsp1_rep	CDS	17051199	17051279	.	+	0	Parent=Os10t0462900-02
Chr10	irgsp1_rep	CDS	17051366	17051434	.	+	0	Parent=Os10t0462900-02
Chr10	irgsp1_rep	CDS	17051579	17051656	.	+	0	Parent=Os10t0462900-02
Chr10	irgsp1_rep	CDS	17051744	17051839	.	+	0	Parent=Os10t0462900-02
Chr10	irgsp1_rep	CDS	17052147	17052246	.	+	0	Parent=Os10t0462900-02
Chr10	irgsp1_rep	CDS	17052374	17052477	.	+	2	Parent=Os10t0462900-02
Chr10	irgsp1_rep	CDS	17052562	17052667	.	+	0	Parent=Os10t0462900-02
Chr10	irgsp1_rep	CDS	17052761	17052839	.	+	2	Parent=Os10t0462900-02
Chr10	irgsp1_rep	CDS	17053027	17053129	.	+	1	Parent=Os10t0462900-02
Chr10	irgsp1_rep	three_prime_UTR	17053130	17053406	.	+	.	Parent=Os10t0462900-02
Chr10	irgsp1_rep	mRNA	17049011	17050357	.	-	.	ID=Os10t0462966-00;Name=Os10t0462966-00;Locus_id=Os10g0462966;Note=Non-protein coding transcript.;Transcript_evidence=BT087018 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0462966-00
Chr10	irgsp1_rep	exon	17050184	17050357	.	-	.	Parent=Os10t0462966-00
Chr10	irgsp1_rep	exon	17049433	17049613	.	-	.	Parent=Os10t0462966-00
Chr10	irgsp1_rep	exon	17049011	17049139	.	-	.	Parent=Os10t0462966-00
Chr10	irgsp1_rep	mRNA	17052157	17053269	.	-	.	ID=Os10t0463032-00;Name=Os10t0463032-00;Locus_id=Os10g0463032;Note=Non-protein coding transcript.;Transcript_evidence=BT016176 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0463032-00
Chr10	irgsp1_rep	exon	17053007	17053269	.	-	.	Parent=Os10t0463032-00
Chr10	irgsp1_rep	exon	17052752	17052821	.	-	.	Parent=Os10t0463032-00
Chr10	irgsp1_rep	exon	17052551	17052661	.	-	.	Parent=Os10t0463032-00
Chr10	irgsp1_rep	exon	17052389	17052469	.	-	.	Parent=Os10t0463032-00
Chr10	irgsp1_rep	exon	17052157	17052262	.	-	.	Parent=Os10t0463032-00
Chr10	irgsp1_rep	mRNA	17063082	17066593	.	+	.	ID=Os10t0463100-00;Name=Os10t0463100-00;Locus_id=Os10g0463100;Note=Similar to Cysteinyl-tRNA synthetase.;Transcript_evidence=BT067820 (DDBJ);ORF_evidence=B6SH65 (UniProt);GO=Biological Process: cysteinyl-tRNA aminoacylation (GO:0006423),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: cysteine-tRNA ligase activity (GO:0004817),Molecular Function: ATP binding (GO:0005524);InterPro=Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Cysteinyl-tRNA synthetase%2C class Ia (IPR015803);TENOR=Os10t0463100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	17063082	17063428	.	+	0	Parent=Os10t0463100-00
Chr10	irgsp1_rep	CDS	17063936	17063999	.	+	1	Parent=Os10t0463100-00
Chr10	irgsp1_rep	CDS	17064272	17064433	.	+	0	Parent=Os10t0463100-00
Chr10	irgsp1_rep	CDS	17064952	17065122	.	+	0	Parent=Os10t0463100-00
Chr10	irgsp1_rep	CDS	17065207	17065488	.	+	0	Parent=Os10t0463100-00
Chr10	irgsp1_rep	CDS	17065587	17065712	.	+	0	Parent=Os10t0463100-00
Chr10	irgsp1_rep	CDS	17065814	17066021	.	+	0	Parent=Os10t0463100-00
Chr10	irgsp1_rep	CDS	17066122	17066231	.	+	2	Parent=Os10t0463100-00
Chr10	irgsp1_rep	three_prime_UTR	17066232	17066294	.	+	.	Parent=Os10t0463100-00
Chr10	irgsp1_rep	three_prime_UTR	17066389	17066593	.	+	.	Parent=Os10t0463100-00
Chr10	irgsp1_rep	mRNA	17070925	17072455	.	+	.	ID=Os10t0463200-01;Name=Os10t0463200-01;Locus_id=Os10g0463200;CGSNL Gene Symbol=GELP108;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 108;Oryzabase Gene Symbol Synonym(s)=OsGELP108;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 108;Note=Esterase%2C SGNH hydrolase-type domain containing protein.;Transcript_evidence=AK108201 (DDBJ%2C Best hit);ORF_evidence=B6UBC0 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087),Esterase%2C SGNH hydrolase-type (IPR013830);NIAS_FLcDNA=002-140-C12;Oryzabase=11058;Expression=AK108201;TENOR=Os10t0463200-01;KEGG=Os10t0463200-01
Chr10	irgsp1_rep	five_prime_UTR	17070925	17070967	.	+	.	Parent=Os10t0463200-01
Chr10	irgsp1_rep	CDS	17070968	17071333	.	+	0	Parent=Os10t0463200-01
Chr10	irgsp1_rep	CDS	17071421	17071663	.	+	0	Parent=Os10t0463200-01
Chr10	irgsp1_rep	CDS	17071734	17072297	.	+	0	Parent=Os10t0463200-01
Chr10	irgsp1_rep	three_prime_UTR	17072298	17072455	.	+	.	Parent=Os10t0463200-01
Chr10	irgsp1_rep	mRNA	17074150	17075296	.	+	.	ID=Os10t0463300-01;Name=Os10t0463300-01;Locus_id=Os10g0463300;Note=UspA domain containing protein.;Transcript_evidence=AK109194 (DDBJ%2C Best hit);ORF_evidence=A2Z888 (UniProt);GO=Biological Process: response to stress (GO:0006950);InterPro=UspA (IPR006016),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=002-156-B07;Expression=AK109194;TENOR=Os10t0463300-01;KEGG=Os10t0463300-01
Chr10	irgsp1_rep	five_prime_UTR	17074150	17074258	.	+	.	Parent=Os10t0463300-01
Chr10	irgsp1_rep	CDS	17074259	17074719	.	+	0	Parent=Os10t0463300-01
Chr10	irgsp1_rep	CDS	17074920	17075079	.	+	1	Parent=Os10t0463300-01
Chr10	irgsp1_rep	three_prime_UTR	17075080	17075296	.	+	.	Parent=Os10t0463300-01
Chr10	irgsp1_rep	mRNA	17076098	17081344	.	-	.	ID=Os10t0463400-01;Name=Os10t0463400-01;Locus_id=Os10g0463400;RAP-DB Gene Symbol Synonym(s)=EF1%2C Ef1 (Ef2)%2C Ef2%2C Ef1%2C Ehd1%2C Eh1(t)*%2C EF1%2C ef1%2C qEHD-10-1(t) (qEhd1)%2C OsRR30%2C OsRR22;RAP-DB Gene Name Synonym(s)=EARLINESS 1%2C Earliness1%2C Earliness 1%2C Earliness-1%2C EARLY HEADING DATE 1%2C Early heading date1;CGSNL Gene Symbol=EF1;CGSNL Gene Name=EARLINESS 1;Oryzabase Gene Symbol Synonym(s)=Ef1 (Ef2)%2C Ef2%2C Ef1%2C Ehd1%2C Eh1(t)*%2C EF1%2C ef1%2C qEHD-10-1(t) (qEhd1)%2C OsRR30%2C OsRR22;Oryzabase Gene Name Synonym(s)=Earliness1%2C Earliness 1%2C Earliness-1%2C EARLY HEADING DATE 1%2C Early heading date1;Note=B-type response regulator%2C Floral inducer to promote short-day (SD) flowering pathway;Transcript_evidence=AB092506 (Genbank);ORF_evidence=Q7Y0W5 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: two-component response regulator activity (GO:0000156),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),CheY-like superfamily (IPR011006),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Response regulator%2C plant B-type (IPR017053),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);Manual Curation=May 31%2C 2010;Literature_PMID=15078816,16919402,17293362,20543848;Oryzabase=883;TENOR=Os10t0463400-01
Chr10	irgsp1_rep	CDS	17081236	17081344	.	-	0	Parent=Os10t0463400-01
Chr10	irgsp1_rep	CDS	17079823	17079975	.	-	2	Parent=Os10t0463400-01
Chr10	irgsp1_rep	CDS	17077580	17077981	.	-	2	Parent=Os10t0463400-01
Chr10	irgsp1_rep	CDS	17077354	17077430	.	-	2	Parent=Os10t0463400-01
Chr10	irgsp1_rep	CDS	17076098	17076382	.	-	0	Parent=Os10t0463400-01
Chr10	irgsp1_rep	mRNA	17089205	17089666	.	-	.	ID=Os10t0463600-01;Name=Os10t0463600-01;Locus_id=Os10g0463600;Note=Non-protein coding transcript.;Transcript_evidence=AK243640 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J100087P05;TENOR=Os10t0463600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	exon	17089205	17089666	.	-	.	Parent=Os10t0463600-01
Chr10	irgsp1_rep	mRNA	17112008	17115350	.	-	.	ID=Os10t0463800-01;Name=Os10t0463800-01;Locus_id=Os10g0463800;RAP-DB Gene Symbol Synonym(s)=FLO7%2C Flo7%2C flo7(t)%2C flo-7;RAP-DB Gene Name Synonym(s)=FLOURY ENDOSPERM 7%2C floury endosperm7%2C floury-7%2C floury 7;Note=Domain of unknown function%2C DUF1338%2C containing green-plant-unique protein%2C Regulation of starch synthesis and amyloplast development%2C Peripheral endosperm development;Transcript_evidence=AK102352;ORF_evidence=Q337M4;InterPro=Domain of unknown function DUF1338 (IPR009770);NIAS_FLcDNA=J033091E11;Manual Curation=February 15%2C 2016;Literature_PMID=26608643;Expression=AK102352;TENOR=Os10t0463800-01;KEGG=Os10t0463800-01
Chr10	irgsp1_rep	five_prime_UTR	17115267	17115350	.	-	.	Parent=Os10t0463800-01
Chr10	irgsp1_rep	CDS	17115075	17115266	.	-	0	Parent=Os10t0463800-01
Chr10	irgsp1_rep	CDS	17114040	17114189	.	-	0	Parent=Os10t0463800-01
Chr10	irgsp1_rep	CDS	17113708	17113920	.	-	0	Parent=Os10t0463800-01
Chr10	irgsp1_rep	CDS	17113282	17113403	.	-	0	Parent=Os10t0463800-01
Chr10	irgsp1_rep	CDS	17112921	17113084	.	-	1	Parent=Os10t0463800-01
Chr10	irgsp1_rep	CDS	17112411	17112565	.	-	2	Parent=Os10t0463800-01
Chr10	irgsp1_rep	CDS	17112174	17112272	.	-	0	Parent=Os10t0463800-01
Chr10	irgsp1_rep	three_prime_UTR	17112008	17112173	.	-	.	Parent=Os10t0463800-01
Chr10	irgsp1_rep	mRNA	17116339	17116723	.	+	.	ID=Os10t0463900-00;Name=Os10t0463900-00;Locus_id=Os10g0463900;Note=Conserved hypothetical protein.;Transcript_evidence=EU963656 (DDBJ);ORF_evidence=NP_001064790.1 (RefSeq);TENOR=Os10t0463900-00;KEGG=Os10t0463900-00
Chr10	irgsp1_rep	five_prime_UTR	17116339	17116341	.	+	.	Parent=Os10t0463900-00
Chr10	irgsp1_rep	CDS	17116342	17116719	.	+	0	Parent=Os10t0463900-00
Chr10	irgsp1_rep	three_prime_UTR	17116720	17116723	.	+	.	Parent=Os10t0463900-00
Chr10	irgsp1_rep	mRNA	17117290	17119815	.	-	.	ID=Os10t0464000-01;Name=Os10t0464000-01;Locus_id=Os10g0464000;Note=Similar to Hypersensitive-induced response protein.;Transcript_evidence=AK103475 (DDBJ%2C Best hit);ORF_evidence=A6YGE4 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Band 7 protein (IPR001107),Stomatin (IPR001972);NIAS_FLcDNA=J033130D18;Expression=AK103475;TENOR=Os10t0464000-01;KEGG=Os10t0464000-01
Chr10	irgsp1_rep	five_prime_UTR	17119738	17119815	.	-	.	Parent=Os10t0464000-01
Chr10	irgsp1_rep	five_prime_UTR	17119047	17119084	.	-	.	Parent=Os10t0464000-01
Chr10	irgsp1_rep	CDS	17118837	17119046	.	-	0	Parent=Os10t0464000-01
Chr10	irgsp1_rep	CDS	17118586	17118706	.	-	0	Parent=Os10t0464000-01
Chr10	irgsp1_rep	CDS	17118181	17118369	.	-	2	Parent=Os10t0464000-01
Chr10	irgsp1_rep	CDS	17117583	17117941	.	-	2	Parent=Os10t0464000-01
Chr10	irgsp1_rep	three_prime_UTR	17117290	17117582	.	-	.	Parent=Os10t0464000-01
Chr10	irgsp1_rep	mRNA	17117594	17117944	.	+	.	ID=Os10t0464050-00;Name=Os10t0464050-00;Locus_id=Os10g0464050;Note=Non-protein coding transcript.;Transcript_evidence=EU969129 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0464050-00
Chr10	irgsp1_rep	exon	17117594	17117944	.	+	.	Parent=Os10t0464050-00
Chr10	irgsp1_rep	mRNA	17120644	17124734	.	-	.	ID=Os10t0464100-01;Name=Os10t0464100-01;Locus_id=Os10g0464100;Oryzabase Gene Symbol Synonym(s)=OsWD40-176;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK068906 (DDBJ%2C Best hit);ORF_evidence=NP_001147117.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=J023002M22;Oryzabase=10857;Expression=AK068906;TENOR=Os10t0464100-01;KEGG=Os10t0464100-01
Chr10	irgsp1_rep	five_prime_UTR	17124622	17124734	.	-	.	Parent=Os10t0464100-01
Chr10	irgsp1_rep	CDS	17124085	17124621	.	-	0	Parent=Os10t0464100-01
Chr10	irgsp1_rep	CDS	17123275	17123487	.	-	0	Parent=Os10t0464100-01
Chr10	irgsp1_rep	CDS	17122980	17123180	.	-	0	Parent=Os10t0464100-01
Chr10	irgsp1_rep	CDS	17122710	17122817	.	-	0	Parent=Os10t0464100-01
Chr10	irgsp1_rep	CDS	17122464	17122601	.	-	0	Parent=Os10t0464100-01
Chr10	irgsp1_rep	CDS	17122036	17122287	.	-	0	Parent=Os10t0464100-01
Chr10	irgsp1_rep	CDS	17121631	17121951	.	-	0	Parent=Os10t0464100-01
Chr10	irgsp1_rep	CDS	17121318	17121488	.	-	0	Parent=Os10t0464100-01
Chr10	irgsp1_rep	three_prime_UTR	17121317	17121317	.	-	.	Parent=Os10t0464100-01
Chr10	irgsp1_rep	three_prime_UTR	17121179	17121233	.	-	.	Parent=Os10t0464100-01
Chr10	irgsp1_rep	three_prime_UTR	17120644	17121044	.	-	.	Parent=Os10t0464100-01
Chr10	irgsp1_rep	mRNA	17132122	17132676	.	-	.	ID=Os10t0464300-00;Name=Os10t0464300-00;Locus_id=Os10g0464300;Note=AWPM-19-like family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001064793.1 (RefSeq);InterPro=AWPM-19-like (IPR008390);TENOR=Os10t0464300-00;KEGG=Os10t0464300-00
Chr10	irgsp1_rep	CDS	17132122	17132676	.	-	0	Parent=Os10t0464300-00
Chr10	irgsp1_rep	mRNA	17132146	17132485	.	+	.	ID=Os10t0464350-00;Name=Os10t0464350-00;Locus_id=Os10g0464350;Note=Hypothetical protein.;Transcript_evidence=EU951562 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0464350-00
Chr10	irgsp1_rep	CDS	17132146	17132485	.	+	0	Parent=Os10t0464350-00
Chr10	irgsp1_rep	mRNA	17133478	17137843	.	-	.	ID=Os10t0464400-01;Name=Os10t0464400-01;Locus_id=Os10g0464400;Note=Haloacid dehalogenase-like hydrolase domain containing protein.;Transcript_evidence=AK062574 (DDBJ%2C Best hit),AK066663 (DDBJ%2C Best hit);ORF_evidence=Q109K4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: riboflavin biosynthetic process (GO:0009231),Molecular Function: catalytic activity (GO:0003824),Molecular Function: riboflavin kinase activity (GO:0008531),Molecular Function: hydrolase activity (GO:0016787);InterPro=Haloacid dehalogenase/epoxide hydrolase (IPR005833),Haloacid dehalogenase-like hydrolase (IPR005834),HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 (IPR006402),Riboflavin kinase domain%2C bacterial/eukaryotic (IPR015865),HAD-like domain (IPR023214),Riboflavin kinase domain (IPR023465),Riboflavin kinase (IPR023468);NIAS_FLcDNA=001-047-A01,J013071M21;Expression=AK062574;TENOR=Os10t0464400-01;KEGG=Os10t0464400-01 (EC:2.7.1.26)
Chr10	irgsp1_rep	five_prime_UTR	17137700	17137843	.	-	.	Parent=Os10t0464400-01
Chr10	irgsp1_rep	five_prime_UTR	17136652	17136708	.	-	.	Parent=Os10t0464400-01
Chr10	irgsp1_rep	CDS	17136576	17136651	.	-	0	Parent=Os10t0464400-01
Chr10	irgsp1_rep	CDS	17136287	17136473	.	-	2	Parent=Os10t0464400-01
Chr10	irgsp1_rep	CDS	17135341	17135471	.	-	1	Parent=Os10t0464400-01
Chr10	irgsp1_rep	CDS	17135159	17135228	.	-	2	Parent=Os10t0464400-01
Chr10	irgsp1_rep	CDS	17134957	17135022	.	-	1	Parent=Os10t0464400-01
Chr10	irgsp1_rep	CDS	17134639	17134793	.	-	1	Parent=Os10t0464400-01
Chr10	irgsp1_rep	CDS	17134462	17134557	.	-	2	Parent=Os10t0464400-01
Chr10	irgsp1_rep	CDS	17134098	17134249	.	-	2	Parent=Os10t0464400-01
Chr10	irgsp1_rep	CDS	17133936	17134019	.	-	0	Parent=Os10t0464400-01
Chr10	irgsp1_rep	CDS	17133665	17133841	.	-	0	Parent=Os10t0464400-01
Chr10	irgsp1_rep	three_prime_UTR	17133478	17133664	.	-	.	Parent=Os10t0464400-01
Chr10	irgsp1_rep	mRNA	17140936	17145821	.	-	.	ID=Os10t0464500-00;Name=Os10t0464500-00;Locus_id=Os10g0464500;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001064795.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),von Willebrand factor%2C type A (IPR002035),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);TENOR=Os10t0464500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	17145618	17145821	.	-	0	Parent=Os10t0464500-00
Chr10	irgsp1_rep	CDS	17141911	17142927	.	-	0	Parent=Os10t0464500-00
Chr10	irgsp1_rep	CDS	17140936	17141175	.	-	0	Parent=Os10t0464500-00
Chr10	irgsp1_rep	mRNA	17152945	17157443	.	-	.	ID=Os10t0464800-00;Name=Os10t0464800-00;Locus_id=Os10g0464800;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=EU955098 (DDBJ);ORF_evidence=NP_001176195.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),von Willebrand factor%2C type A (IPR002035),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);TENOR=Os10t0464800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	17156407	17157443	.	-	0	Parent=Os10t0464800-00
Chr10	irgsp1_rep	CDS	17152945	17154757	.	-	1	Parent=Os10t0464800-00
Chr10	irgsp1_rep	mRNA	17153141	17156958	.	+	.	ID=Os10t0464901-00;Name=Os10t0464901-00;Locus_id=Os10g0464901;Note=Hypothetical protein.;Transcript_evidence=BT064817 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0464901-00
Chr10	irgsp1_rep	five_prime_UTR	17153141	17153142	.	+	.	Parent=Os10t0464901-00
Chr10	irgsp1_rep	CDS	17153143	17153907	.	+	0	Parent=Os10t0464901-00
Chr10	irgsp1_rep	CDS	17156541	17156958	.	+	0	Parent=Os10t0464901-00
Chr10	irgsp1_rep	mRNA	17158115	17163197	.	-	.	ID=Os10t0465000-01;Name=Os10t0465000-01;Locus_id=Os10g0465000;Oryzabase Gene Symbol Synonym(s)=OsWD40-177;Note=Hypothetical conserved gene.;Transcript_evidence=AK111822 (DDBJ%2C Best hit);ORF_evidence=B9G653 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=LisH dimerisation motif (IPR006594);NIAS_FLcDNA=J023039N14;Oryzabase=10858;Expression=AK111822;TENOR=Os10t0465000-01;KEGG=Os10t0465000-01
Chr10	irgsp1_rep	five_prime_UTR	17162809	17163197	.	-	.	Parent=Os10t0465000-01
Chr10	irgsp1_rep	CDS	17162140	17162808	.	-	0	Parent=Os10t0465000-01
Chr10	irgsp1_rep	CDS	17161472	17161519	.	-	0	Parent=Os10t0465000-01
Chr10	irgsp1_rep	three_prime_UTR	17159177	17161471	.	-	.	Parent=Os10t0465000-01
Chr10	irgsp1_rep	three_prime_UTR	17158115	17158605	.	-	.	Parent=Os10t0465000-01
Chr10	irgsp1_rep	mRNA	17158123	17162971	.	-	.	ID=Os10t0465000-02;Name=Os10t0465000-02;Locus_id=Os10g0465000;Oryzabase Gene Symbol Synonym(s)=OsWD40-177;Note=Hypothetical conserved gene.;Transcript_evidence=AK072090 (DDBJ%2C Best hit);ORF_evidence=B9G653 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=LisH dimerisation motif (IPR006594);NIAS_FLcDNA=J013116J15;Oryzabase=10858;TENOR=Os10t0465000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	17162809	17162971	.	-	.	Parent=Os10t0465000-02
Chr10	irgsp1_rep	CDS	17162140	17162808	.	-	0	Parent=Os10t0465000-02
Chr10	irgsp1_rep	CDS	17161472	17161519	.	-	0	Parent=Os10t0465000-02
Chr10	irgsp1_rep	three_prime_UTR	17161330	17161471	.	-	.	Parent=Os10t0465000-02
Chr10	irgsp1_rep	three_prime_UTR	17159177	17159824	.	-	.	Parent=Os10t0465000-02
Chr10	irgsp1_rep	three_prime_UTR	17158123	17158605	.	-	.	Parent=Os10t0465000-02
Chr10	irgsp1_rep	mRNA	17158119	17162522	.	-	.	ID=Os10t0465000-03;Name=Os10t0465000-03;Locus_id=Os10g0465000;Oryzabase Gene Symbol Synonym(s)=OsWD40-177;Note=Conserved hypothetical protein.;Transcript_evidence=AK111526 (DDBJ%2C Best hit);ORF_evidence=B9G653 (UniProt);NIAS_FLcDNA=J013023F21;Oryzabase=10858;TENOR=Os10t0465000-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	17162521	17162522	.	-	.	Parent=Os10t0465000-03
Chr10	irgsp1_rep	CDS	17162140	17162520	.	-	0	Parent=Os10t0465000-03
Chr10	irgsp1_rep	CDS	17161883	17161918	.	-	0	Parent=Os10t0465000-03
Chr10	irgsp1_rep	three_prime_UTR	17161330	17161882	.	-	.	Parent=Os10t0465000-03
Chr10	irgsp1_rep	three_prime_UTR	17159177	17159824	.	-	.	Parent=Os10t0465000-03
Chr10	irgsp1_rep	three_prime_UTR	17158119	17158605	.	-	.	Parent=Os10t0465000-03
Chr10	irgsp1_rep	mRNA	17164709	17165494	.	-	.	ID=Os10t0465175-00;Name=Os10t0465175-00;Locus_id=Os10g0465175;Note=Hypothetical gene.;Transcript_evidence=CU406910 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os10t0465175-00;KEGG=Os10t0465175-00
Chr10	irgsp1_rep	five_prime_UTR	17165449	17165494	.	-	.	Parent=Os10t0465175-00
Chr10	irgsp1_rep	CDS	17165230	17165448	.	-	0	Parent=Os10t0465175-00
Chr10	irgsp1_rep	three_prime_UTR	17165102	17165229	.	-	.	Parent=Os10t0465175-00
Chr10	irgsp1_rep	three_prime_UTR	17164709	17164973	.	-	.	Parent=Os10t0465175-00
Chr10	irgsp1_rep	mRNA	17170773	17171264	.	-	.	ID=Os10t0465300-00;Name=Os10t0465300-00;Locus_id=Os10g0465300;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q9AV90 (UniProt);TENOR=Os10t0465300-00
Chr10	irgsp1_rep	CDS	17170773	17171264	.	-	0	Parent=Os10t0465300-00
Chr10	irgsp1_rep	mRNA	17180759	17183189	.	+	.	ID=Os10t0465700-01;Name=Os10t0465700-01;Locus_id=Os10g0465700;Oryzabase Gene Symbol Synonym(s)=OsSTA246%2C STA246%2C OsBamy1%2C Bamy1%2C BAM2%2C OsBAM2;Oryzabase Gene Name Synonym(s)=beta-amylase 1%2C Beta-amylase 2;Note=Similar to Beta-amylase PCT-BMYI (EC 3.2.1.2).;Transcript_evidence=AK067249 (DDBJ%2C Best hit);ORF_evidence=A2Z8A8 (UniProt);GO=Biological Process: polysaccharide catabolic process (GO:0000272),Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: beta-amylase activity (GO:0016161),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 14B%2C plant (IPR001371),Glycoside hydrolase%2C family 14 (IPR001554),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 14%2C conserved site (IPR018238);NIAS_FLcDNA=J013098M02;Oryzabase=19514;Expression=AK067249;TENOR=Os10t0465700-01;KEGG=Os10t0465700-01 (EC:3.2.1.2)
Chr10	irgsp1_rep	five_prime_UTR	17180759	17181011	.	+	.	Parent=Os10t0465700-01
Chr10	irgsp1_rep	CDS	17181012	17181508	.	+	0	Parent=Os10t0465700-01
Chr10	irgsp1_rep	CDS	17181591	17181801	.	+	1	Parent=Os10t0465700-01
Chr10	irgsp1_rep	CDS	17181890	17182000	.	+	0	Parent=Os10t0465700-01
Chr10	irgsp1_rep	CDS	17182095	17182883	.	+	0	Parent=Os10t0465700-01
Chr10	irgsp1_rep	three_prime_UTR	17182884	17183189	.	+	.	Parent=Os10t0465700-01
Chr10	irgsp1_rep	mRNA	17184397	17184789	.	-	.	ID=Os10t0465800-00;Name=Os10t0465800-00;Locus_id=Os10g0465800;CGSNL Gene Symbol=RPL21.2;CGSNL Gene Name=RIBOSOMAL PROTEIN L21.2;Oryzabase Gene Symbol Synonym(s)=OsRPL21.2;Oryzabase Gene Name Synonym(s)=ribosomal protein L21.2%2C ribosomal protein large subunit 21.2;Note=Similar to 60S ribosomal protein L21.;Transcript_evidence=CT837723 (DDBJ%2C Best hit);ORF_evidence=Q9ZSU8 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L21e (IPR001147);Oryzabase=22197;TENOR=Os10t0465800-00;KEGG=Os10t0465800-00
Chr10	irgsp1_rep	five_prime_UTR	17184788	17184789	.	-	.	Parent=Os10t0465800-00
Chr10	irgsp1_rep	CDS	17184530	17184787	.	-	0	Parent=Os10t0465800-00
Chr10	irgsp1_rep	three_prime_UTR	17184397	17184529	.	-	.	Parent=Os10t0465800-00
Chr10	irgsp1_rep	mRNA	17186500	17190028	.	+	.	ID=Os10t0465900-01;Name=Os10t0465900-01;Locus_id=Os10g0465900;Note=Similar to Kinase%2C pfkB family protein.;Transcript_evidence=AK110879 (DDBJ%2C Best hit);ORF_evidence=Q7XDM4 (UniProt);InterPro=Carbohydrate/purine kinase (IPR011611);NIAS_FLcDNA=002-172-G06;TENOR=Os10t0465900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	17186500	17186605	.	+	.	Parent=Os10t0465900-01
Chr10	irgsp1_rep	CDS	17186606	17186737	.	+	0	Parent=Os10t0465900-01
Chr10	irgsp1_rep	CDS	17186833	17186922	.	+	0	Parent=Os10t0465900-01
Chr10	irgsp1_rep	CDS	17187038	17187115	.	+	0	Parent=Os10t0465900-01
Chr10	irgsp1_rep	CDS	17187264	17187404	.	+	0	Parent=Os10t0465900-01
Chr10	irgsp1_rep	three_prime_UTR	17187405	17187623	.	+	.	Parent=Os10t0465900-01
Chr10	irgsp1_rep	three_prime_UTR	17188278	17188428	.	+	.	Parent=Os10t0465900-01
Chr10	irgsp1_rep	three_prime_UTR	17188642	17188768	.	+	.	Parent=Os10t0465900-01
Chr10	irgsp1_rep	three_prime_UTR	17188877	17189003	.	+	.	Parent=Os10t0465900-01
Chr10	irgsp1_rep	three_prime_UTR	17189115	17189218	.	+	.	Parent=Os10t0465900-01
Chr10	irgsp1_rep	three_prime_UTR	17189344	17189479	.	+	.	Parent=Os10t0465900-01
Chr10	irgsp1_rep	three_prime_UTR	17189721	17189773	.	+	.	Parent=Os10t0465900-01
Chr10	irgsp1_rep	three_prime_UTR	17189877	17190028	.	+	.	Parent=Os10t0465900-01
Chr10	irgsp1_rep	mRNA	17191416	17192117	.	+	.	ID=Os10t0465950-00;Name=Os10t0465950-00;Locus_id=Os10g0465950;Note=Hypothetical conserved gene.;Transcript_evidence=CT835811 (DDBJ%2C Best hit);ORF_evidence=B9G655 (UniProt);InterPro=Domain of unknown function DUF861%2C cupin-3 (IPR008579),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710);TENOR=Os10t0465950-00;KEGG=Os10t0465950-00
Chr10	irgsp1_rep	five_prime_UTR	17191416	17191416	.	+	.	Parent=Os10t0465950-00
Chr10	irgsp1_rep	CDS	17191417	17191723	.	+	0	Parent=Os10t0465950-00
Chr10	irgsp1_rep	CDS	17191742	17191881	.	+	2	Parent=Os10t0465950-00
Chr10	irgsp1_rep	three_prime_UTR	17191882	17192117	.	+	.	Parent=Os10t0465950-00
Chr10	irgsp1_rep	mRNA	17192345	17195661	.	-	.	ID=Os10t0466000-01;Name=Os10t0466000-01;Locus_id=Os10g0466000;Note=Conserved hypothetical protein.;Transcript_evidence=AK073137 (DDBJ%2C Best hit);ORF_evidence=Q9AV84 (UniProt);NIAS_FLcDNA=J033022G20;Expression=AK073137;TENOR=Os10t0466000-01;KEGG=Os10t0466000-01
Chr10	irgsp1_rep	five_prime_UTR	17195565	17195661	.	-	.	Parent=Os10t0466000-01
Chr10	irgsp1_rep	five_prime_UTR	17195089	17195316	.	-	.	Parent=Os10t0466000-01
Chr10	irgsp1_rep	CDS	17194714	17195088	.	-	0	Parent=Os10t0466000-01
Chr10	irgsp1_rep	CDS	17194123	17194209	.	-	0	Parent=Os10t0466000-01
Chr10	irgsp1_rep	CDS	17192814	17194025	.	-	0	Parent=Os10t0466000-01
Chr10	irgsp1_rep	three_prime_UTR	17192345	17192813	.	-	.	Parent=Os10t0466000-01
Chr10	irgsp1_rep	mRNA	17192343	17193704	.	-	.	ID=Os10t0466000-02;Name=Os10t0466000-02;Locus_id=Os10g0466000;Note=Hypothetical conserved gene.;Transcript_evidence=AK105458 (DDBJ%2C Best hit);ORF_evidence=Q9AV84 (UniProt);NIAS_FLcDNA=001-125-E04;Expression=AK105458;TENOR=Os10t0466000-02;KEGG=Os10t0466000-02
Chr10	irgsp1_rep	CDS	17192814	17193704	.	-	0	Parent=Os10t0466000-02
Chr10	irgsp1_rep	three_prime_UTR	17192343	17192813	.	-	.	Parent=Os10t0466000-02
Chr10	irgsp1_rep	mRNA	17198438	17200621	.	+	.	ID=Os10t0466100-00;Name=Os10t0466100-00;Locus_id=Os10g0466100;Note=Similar to predicted protein.;Transcript_evidence=EU954397 (DDBJ);ORF_evidence=B8BHD1 (UniProt);TENOR=Os10t0466100-00;KEGG=Os10t0466100-00
Chr10	irgsp1_rep	CDS	17198438	17198529	.	+	0	Parent=Os10t0466100-00
Chr10	irgsp1_rep	CDS	17198690	17198807	.	+	1	Parent=Os10t0466100-00
Chr10	irgsp1_rep	CDS	17198910	17198953	.	+	0	Parent=Os10t0466100-00
Chr10	irgsp1_rep	CDS	17199123	17199233	.	+	1	Parent=Os10t0466100-00
Chr10	irgsp1_rep	CDS	17199620	17199712	.	+	1	Parent=Os10t0466100-00
Chr10	irgsp1_rep	CDS	17199797	17199915	.	+	1	Parent=Os10t0466100-00
Chr10	irgsp1_rep	CDS	17200445	17200572	.	+	2	Parent=Os10t0466100-00
Chr10	irgsp1_rep	three_prime_UTR	17200573	17200621	.	+	.	Parent=Os10t0466100-00
Chr10	irgsp1_rep	mRNA	17201518	17203079	.	-	.	ID=Os10t0466200-01;Name=Os10t0466200-01;Locus_id=Os10g0466200;Note=Ribosomal protein L11 family protein.;Transcript_evidence=AK063749 (DDBJ%2C Best hit);ORF_evidence=Q948T0 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L11 (IPR000911),Ribosomal protein L11%2C bacterial-type (IPR006519),Ribosomal protein L11%2C C-terminal (IPR020783),Ribosomal protein L11%2C N-terminal (IPR020784);NIAS_FLcDNA=001-120-G08;Expression=AK063749;TENOR=Os10t0466200-01;KEGG=Os10t0466200-01
Chr10	irgsp1_rep	five_prime_UTR	17202995	17203079	.	-	.	Parent=Os10t0466200-01
Chr10	irgsp1_rep	five_prime_UTR	17202263	17202281	.	-	.	Parent=Os10t0466200-01
Chr10	irgsp1_rep	CDS	17201795	17202262	.	-	0	Parent=Os10t0466200-01
Chr10	irgsp1_rep	three_prime_UTR	17201518	17201794	.	-	.	Parent=Os10t0466200-01
Chr10	irgsp1_rep	mRNA	17203587	17210619	.	-	.	ID=Os10t0466300-01;Name=Os10t0466300-01;Locus_id=Os10g0466300;Oryzabase Gene Symbol Synonym(s)=OsWD40-178%2C OsPUB72;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 72%2C U-box protein 72;Note=Similar to Yarrowia lipolytica Chromosome C of strain CLIB99 of Yarrowia lipolytica.;Transcript_evidence=AK064778 (DDBJ%2C Best hit);ORF_evidence=Q9AV81 (UniProt);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),U box domain (IPR003613),WD40 repeat-like-containing domain (IPR011046),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Pre-mRNA-splicing factor 19 (IPR013915),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J013000B03;Oryzabase=10859;Expression=AK064778;TENOR=Os10t0466300-01;KEGG=Os10t0466300-01 (EC:6.3.2.19)
Chr10	irgsp1_rep	five_prime_UTR	17210410	17210619	.	-	.	Parent=Os10t0466300-01
Chr10	irgsp1_rep	CDS	17210397	17210409	.	-	0	Parent=Os10t0466300-01
Chr10	irgsp1_rep	CDS	17210228	17210313	.	-	2	Parent=Os10t0466300-01
Chr10	irgsp1_rep	CDS	17210046	17210117	.	-	0	Parent=Os10t0466300-01
Chr10	irgsp1_rep	CDS	17209817	17209879	.	-	0	Parent=Os10t0466300-01
Chr10	irgsp1_rep	CDS	17209169	17209255	.	-	0	Parent=Os10t0466300-01
Chr10	irgsp1_rep	CDS	17207314	17207455	.	-	0	Parent=Os10t0466300-01
Chr10	irgsp1_rep	CDS	17207107	17207225	.	-	2	Parent=Os10t0466300-01
Chr10	irgsp1_rep	CDS	17206803	17206919	.	-	0	Parent=Os10t0466300-01
Chr10	irgsp1_rep	CDS	17206419	17206514	.	-	0	Parent=Os10t0466300-01
Chr10	irgsp1_rep	CDS	17206262	17206321	.	-	0	Parent=Os10t0466300-01
Chr10	irgsp1_rep	CDS	17205991	17206065	.	-	0	Parent=Os10t0466300-01
Chr10	irgsp1_rep	CDS	17205137	17205241	.	-	0	Parent=Os10t0466300-01
Chr10	irgsp1_rep	CDS	17204903	17205019	.	-	0	Parent=Os10t0466300-01
Chr10	irgsp1_rep	CDS	17204729	17204806	.	-	0	Parent=Os10t0466300-01
Chr10	irgsp1_rep	CDS	17204554	17204650	.	-	0	Parent=Os10t0466300-01
Chr10	irgsp1_rep	CDS	17204268	17204319	.	-	2	Parent=Os10t0466300-01
Chr10	irgsp1_rep	CDS	17204106	17204176	.	-	1	Parent=Os10t0466300-01
Chr10	irgsp1_rep	CDS	17203876	17204009	.	-	2	Parent=Os10t0466300-01
Chr10	irgsp1_rep	three_prime_UTR	17203587	17203875	.	-	.	Parent=Os10t0466300-01
Chr10	irgsp1_rep	mRNA	17203627	17210541	.	-	.	ID=Os10t0466300-02;Name=Os10t0466300-02;Locus_id=Os10g0466300;Oryzabase Gene Symbol Synonym(s)=OsWD40-178%2C OsPUB72;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 72%2C U-box protein 72;Note=Similar to Yarrowia lipolytica Chromosome C of strain CLIB99 of Yarrowia lipolytica.;Transcript_evidence=AK104909 (DDBJ%2C Best hit);ORF_evidence=Q9AV81 (UniProt);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),U box domain (IPR003613),WD40 repeat-like-containing domain (IPR011046),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Pre-mRNA-splicing factor 19 (IPR013915),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=001-046-H12;Oryzabase=10859;Expression=AK104909;TENOR=Os10t0466300-02;KEGG=Os10t0466300-02 (EC:6.3.2.19)
Chr10	irgsp1_rep	five_prime_UTR	17210410	17210541	.	-	.	Parent=Os10t0466300-02
Chr10	irgsp1_rep	CDS	17210397	17210409	.	-	0	Parent=Os10t0466300-02
Chr10	irgsp1_rep	CDS	17210228	17210313	.	-	2	Parent=Os10t0466300-02
Chr10	irgsp1_rep	CDS	17210046	17210117	.	-	0	Parent=Os10t0466300-02
Chr10	irgsp1_rep	CDS	17209817	17209879	.	-	0	Parent=Os10t0466300-02
Chr10	irgsp1_rep	CDS	17209169	17209255	.	-	0	Parent=Os10t0466300-02
Chr10	irgsp1_rep	CDS	17207314	17207455	.	-	0	Parent=Os10t0466300-02
Chr10	irgsp1_rep	CDS	17207107	17207225	.	-	2	Parent=Os10t0466300-02
Chr10	irgsp1_rep	CDS	17206803	17206919	.	-	0	Parent=Os10t0466300-02
Chr10	irgsp1_rep	CDS	17206419	17206514	.	-	0	Parent=Os10t0466300-02
Chr10	irgsp1_rep	CDS	17206262	17206321	.	-	0	Parent=Os10t0466300-02
Chr10	irgsp1_rep	CDS	17205991	17206065	.	-	0	Parent=Os10t0466300-02
Chr10	irgsp1_rep	CDS	17205137	17205241	.	-	0	Parent=Os10t0466300-02
Chr10	irgsp1_rep	CDS	17204903	17205019	.	-	0	Parent=Os10t0466300-02
Chr10	irgsp1_rep	CDS	17204729	17204806	.	-	0	Parent=Os10t0466300-02
Chr10	irgsp1_rep	CDS	17204554	17204650	.	-	0	Parent=Os10t0466300-02
Chr10	irgsp1_rep	CDS	17204268	17204319	.	-	2	Parent=Os10t0466300-02
Chr10	irgsp1_rep	CDS	17204106	17204176	.	-	1	Parent=Os10t0466300-02
Chr10	irgsp1_rep	CDS	17203876	17204009	.	-	2	Parent=Os10t0466300-02
Chr10	irgsp1_rep	three_prime_UTR	17203627	17203875	.	-	.	Parent=Os10t0466300-02
Chr10	irgsp1_rep	mRNA	17221688	17224610	.	+	.	ID=Os10t0466500-01;Name=Os10t0466500-01;Locus_id=Os10g0466500;Oryzabase Gene Symbol Synonym(s)=OsCCT34%2C OsCMF10%2C CO9;Oryzabase Gene Name Synonym(s)=CCT domain-containing gene 34%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 34%2C CCT domain protein 34%2C CCT MOTIF FAMILY (CMF) gene 10%2C CONSTANS-like protein CO9;Note=CCT domain containing protein.;Transcript_evidence=AK100335 (DDBJ%2C Best hit);ORF_evidence=NP_001150114.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=CCT domain (IPR010402);NIAS_FLcDNA=J023081A16;Oryzabase=19174;Expression=AK100335;TENOR=Os10t0466500-01;KEGG=Os10t0466500-01
Chr10	irgsp1_rep	five_prime_UTR	17221688	17221777	.	+	.	Parent=Os10t0466500-01
Chr10	irgsp1_rep	CDS	17221778	17221810	.	+	0	Parent=Os10t0466500-01
Chr10	irgsp1_rep	CDS	17222555	17222814	.	+	0	Parent=Os10t0466500-01
Chr10	irgsp1_rep	CDS	17223214	17223370	.	+	1	Parent=Os10t0466500-01
Chr10	irgsp1_rep	CDS	17223458	17223631	.	+	0	Parent=Os10t0466500-01
Chr10	irgsp1_rep	CDS	17223774	17223899	.	+	0	Parent=Os10t0466500-01
Chr10	irgsp1_rep	CDS	17224049	17224150	.	+	0	Parent=Os10t0466500-01
Chr10	irgsp1_rep	three_prime_UTR	17224151	17224610	.	+	.	Parent=Os10t0466500-01
Chr10	irgsp1_rep	mRNA	17222796	17224614	.	+	.	ID=Os10t0466500-02;Name=Os10t0466500-02;Locus_id=Os10g0466500;Oryzabase Gene Symbol Synonym(s)=OsCCT34%2C OsCMF10%2C CO9;Oryzabase Gene Name Synonym(s)=CCT domain-containing gene 34%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 34%2C CCT domain protein 34%2C CCT MOTIF FAMILY (CMF) gene 10%2C CONSTANS-like protein CO9;Note=Similar to CCT motif family protein.;Transcript_evidence=AK069224 (DDBJ%2C Best hit);ORF_evidence=NP_001150114.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=CCT domain (IPR010402);NIAS_FLcDNA=J023014J18;Oryzabase=19174;Expression=AK069224;TENOR=Os10t0466500-02;KEGG=Os10t0466500-02
Chr10	irgsp1_rep	five_prime_UTR	17222796	17222797	.	+	.	Parent=Os10t0466500-02
Chr10	irgsp1_rep	CDS	17222798	17223370	.	+	0	Parent=Os10t0466500-02
Chr10	irgsp1_rep	CDS	17223458	17223631	.	+	0	Parent=Os10t0466500-02
Chr10	irgsp1_rep	CDS	17223774	17223899	.	+	0	Parent=Os10t0466500-02
Chr10	irgsp1_rep	CDS	17224049	17224150	.	+	0	Parent=Os10t0466500-02
Chr10	irgsp1_rep	three_prime_UTR	17224151	17224614	.	+	.	Parent=Os10t0466500-02
Chr10	irgsp1_rep	mRNA	17227374	17229369	.	-	.	ID=Os10t0466700-01;Name=Os10t0466700-01;Locus_id=Os10g0466700;Oryzabase Gene Name Synonym(s)=Ribosomal protein L23e;Note=Similar to 60S ribosomal protein L17.;Transcript_evidence=AK120324 (DDBJ%2C Best hit);ORF_evidence=NP_001159003.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L14b/L23e (IPR000218),Ribosomal protein L14 conserved site (IPR019972),Ribosomal protein L14 domain (IPR023571);NIAS_FLcDNA=J013057L24;Oryzabase=17668;Expression=AK120324;TENOR=Os10t0466700-01;KEGG=Os10t0466700-01
Chr10	irgsp1_rep	five_prime_UTR	17229324	17229369	.	-	.	Parent=Os10t0466700-01
Chr10	irgsp1_rep	CDS	17229311	17229323	.	-	0	Parent=Os10t0466700-01
Chr10	irgsp1_rep	CDS	17228920	17229204	.	-	2	Parent=Os10t0466700-01
Chr10	irgsp1_rep	CDS	17227721	17227762	.	-	2	Parent=Os10t0466700-01
Chr10	irgsp1_rep	CDS	17227537	17227619	.	-	2	Parent=Os10t0466700-01
Chr10	irgsp1_rep	three_prime_UTR	17227374	17227536	.	-	.	Parent=Os10t0466700-01
Chr10	irgsp1_rep	mRNA	17236433	17237309	.	+	.	ID=Os10t0466800-01;Name=Os10t0466800-01;Locus_id=Os10g0466800;Note=Conserved hypothetical protein.;Transcript_evidence=AK108440 (DDBJ%2C Best hit);ORF_evidence=A2Z8C1 (UniProt);NIAS_FLcDNA=002-143-B10;Expression=AK108440;TENOR=Os10t0466800-01;KEGG=Os10t0466800-01
Chr10	irgsp1_rep	five_prime_UTR	17236433	17236736	.	+	.	Parent=Os10t0466800-01
Chr10	irgsp1_rep	CDS	17236737	17237006	.	+	0	Parent=Os10t0466800-01
Chr10	irgsp1_rep	three_prime_UTR	17237007	17237309	.	+	.	Parent=Os10t0466800-01
Chr10	irgsp1_rep	mRNA	17243714	17244600	.	+	.	ID=Os10t0467000-01;Name=Os10t0467000-01;Locus_id=Os10g0467000;Note=Conserved hypothetical protein.;Transcript_evidence=AK107743 (DDBJ%2C Best hit);ORF_evidence=A2Z8C2 (UniProt);NIAS_FLcDNA=002-132-G12;Expression=AK107743;TENOR=Os10t0467000-01;KEGG=Os10t0467000-01
Chr10	irgsp1_rep	five_prime_UTR	17243714	17244141	.	+	.	Parent=Os10t0467000-01
Chr10	irgsp1_rep	CDS	17244142	17244429	.	+	0	Parent=Os10t0467000-01
Chr10	irgsp1_rep	three_prime_UTR	17244430	17244600	.	+	.	Parent=Os10t0467000-01
Chr10	irgsp1_rep	mRNA	17249628	17249923	.	+	.	ID=Os10t0467100-00;Name=Os10t0467100-00;Locus_id=Os10g0467100;Note=Conserved hypothetical protein.;Transcript_evidence=EU972542 (DDBJ);ORF_evidence=B8BHD4 (UniProt);TENOR=Os10t0467100-00
Chr10	irgsp1_rep	CDS	17249628	17249906	.	+	0	Parent=Os10t0467100-00
Chr10	irgsp1_rep	three_prime_UTR	17249907	17249923	.	+	.	Parent=Os10t0467100-00
Chr10	irgsp1_rep	mRNA	17250766	17255582	.	+	.	ID=Os10t0467200-01;Name=Os10t0467200-01;Locus_id=Os10g0467200;Note=Peroxisome assembly%2C p12 domain containing protein.;Transcript_evidence=AK071253 (DDBJ%2C Best hit);ORF_evidence=B7XBZ5 (UniProt);GO=Biological Process: peroxisome organization (GO:0007031),Cellular Component: peroxisomal membrane (GO:0005778),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Pex%2C N-terminal (IPR006845),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Peroxisome assembly%2C p12 (IPR017375);NIAS_FLcDNA=J023087G24;Expression=AK071253;TENOR=Os10t0467200-01;KEGG=Os10t0467200-01
Chr10	irgsp1_rep	five_prime_UTR	17250766	17250929	.	+	.	Parent=Os10t0467200-01
Chr10	irgsp1_rep	CDS	17250930	17251037	.	+	0	Parent=Os10t0467200-01
Chr10	irgsp1_rep	CDS	17252165	17252270	.	+	0	Parent=Os10t0467200-01
Chr10	irgsp1_rep	CDS	17252401	17252549	.	+	2	Parent=Os10t0467200-01
Chr10	irgsp1_rep	CDS	17253309	17253561	.	+	0	Parent=Os10t0467200-01
Chr10	irgsp1_rep	CDS	17253893	17254002	.	+	2	Parent=Os10t0467200-01
Chr10	irgsp1_rep	CDS	17254267	17254341	.	+	0	Parent=Os10t0467200-01
Chr10	irgsp1_rep	CDS	17254442	17254528	.	+	0	Parent=Os10t0467200-01
Chr10	irgsp1_rep	CDS	17254719	17254805	.	+	0	Parent=Os10t0467200-01
Chr10	irgsp1_rep	CDS	17254986	17255123	.	+	0	Parent=Os10t0467200-01
Chr10	irgsp1_rep	CDS	17255238	17255309	.	+	0	Parent=Os10t0467200-01
Chr10	irgsp1_rep	three_prime_UTR	17255310	17255582	.	+	.	Parent=Os10t0467200-01
Chr10	irgsp1_rep	mRNA	17258200	17261223	.	+	.	ID=Os10t0467600-01;Name=Os10t0467600-01;Locus_id=Os10g0467600;Oryzabase Gene Symbol Synonym(s)=p28;Oryzabase Gene Name Synonym(s)=cap-binding protein p28;Note=Similar to cap-binding protein p28.;Transcript_evidence=AK242605 (DDBJ%2C Best hit);ORF_evidence=B6T1D2 (UniProt);GO=Biological Process: translational initiation (GO:0006413),Cellular Component: cytoplasm (GO:0005737),Molecular Function: RNA binding (GO:0003723),Molecular Function: translation initiation factor activity (GO:0003743);InterPro=Translation Initiation factor eIF- 4e (IPR001040),Eukaryotic translation initiation factor 4E (eIF-4E)%2C conserved site (IPR019770),Translation Initiation factor eIF- 4e-like  domain (IPR023398);NIAS_FLcDNA=J090014M13;Oryzabase=14470;TENOR=Os10t0467600-01;KEGG=Os10t0467600-01
Chr10	irgsp1_rep	five_prime_UTR	17258200	17258322	.	+	.	Parent=Os10t0467600-01
Chr10	irgsp1_rep	CDS	17258323	17258531	.	+	0	Parent=Os10t0467600-01
Chr10	irgsp1_rep	CDS	17259501	17259669	.	+	1	Parent=Os10t0467600-01
Chr10	irgsp1_rep	CDS	17259799	17259924	.	+	0	Parent=Os10t0467600-01
Chr10	irgsp1_rep	CDS	17260778	17260843	.	+	0	Parent=Os10t0467600-01
Chr10	irgsp1_rep	CDS	17260962	17261012	.	+	0	Parent=Os10t0467600-01
Chr10	irgsp1_rep	three_prime_UTR	17261013	17261223	.	+	.	Parent=Os10t0467600-01
Chr10	irgsp1_rep	mRNA	17262050	17266561	.	+	.	ID=Os10t0467800-01;Name=Os10t0467800-01;Locus_id=Os10g0467800;RAP-DB Gene Symbol Synonym(s)=CESA7%2C OsCesA7%2C OsCESA7%2C OS_CESA07%2C OsCesA 7%2C CesA7;RAP-DB Gene Name Synonym(s)=CELLULOSE SYNTHASE A7%2C Cellulose synthase A catalytic subunit 7 [UDP-forming]%2C Cellulose synthase A catalytic subunit 7;CGSNL Gene Symbol=CESA7;CGSNL Gene Name=CELLULOSE SYNTHASE A7;Oryzabase Gene Symbol Synonym(s)=OsCesA7%2C OsCESA7%2C OS_CESA07%2C OsCesA 7%2C CesA7;Oryzabase Gene Name Synonym(s)=Cellulose synthase A catalytic subunit 7 [UDP-forming]%2C Cellulose synthase A catalytic subunit 7;Note=Secondary wall-specific cellulose synthase%2C Secondary cell wall formation;Transcript_evidence=AK072259;ORF_evidence=Q9AV71;GO=Biological Process: cellulose biosynthetic process (GO:0030244),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760),Cellular Component: membrane (GO:0016020);InterPro=Cellulose synthase (IPR005150),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841),Cellulose synthase%2C RING-type zinc finger (IPR027934),Nucleotide-diphospho-sugar transferases (IPR029044);NIAS_FLcDNA=J023009D02;Manual Curation=June 9%2C 2016;Literature_PMID=26070439,12970476;Oryzabase=6113;Expression=AK072259;TENOR=Os10t0467800-01;KEGG=Os10t0467800-01 (EC:2.4.1.12)
Chr10	irgsp1_rep	five_prime_UTR	17262050	17262081	.	+	.	Parent=Os10t0467800-01
Chr10	irgsp1_rep	CDS	17262082	17262295	.	+	0	Parent=Os10t0467800-01
Chr10	irgsp1_rep	CDS	17262397	17262524	.	+	2	Parent=Os10t0467800-01
Chr10	irgsp1_rep	CDS	17262640	17262709	.	+	0	Parent=Os10t0467800-01
Chr10	irgsp1_rep	CDS	17262797	17262953	.	+	2	Parent=Os10t0467800-01
Chr10	irgsp1_rep	CDS	17263054	17263666	.	+	1	Parent=Os10t0467800-01
Chr10	irgsp1_rep	CDS	17264097	17264573	.	+	0	Parent=Os10t0467800-01
Chr10	irgsp1_rep	CDS	17264651	17265244	.	+	0	Parent=Os10t0467800-01
Chr10	irgsp1_rep	CDS	17265324	17265674	.	+	0	Parent=Os10t0467800-01
Chr10	irgsp1_rep	CDS	17265773	17266360	.	+	0	Parent=Os10t0467800-01
Chr10	irgsp1_rep	three_prime_UTR	17266361	17266561	.	+	.	Parent=Os10t0467800-01
Chr10	irgsp1_rep	mRNA	17262014	17266550	.	-	.	ID=Os10t0467850-00;Name=Os10t0467850-00;Locus_id=Os10g0467850;Note=Hypothetical protein.;Transcript_evidence=tplb0049k18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0467850-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	17266454	17266550	.	-	.	Parent=Os10t0467850-00
Chr10	irgsp1_rep	CDS	17265772	17266453	.	-	0	Parent=Os10t0467850-00
Chr10	irgsp1_rep	CDS	17265360	17265673	.	-	2	Parent=Os10t0467850-00
Chr10	irgsp1_rep	three_prime_UTR	17265322	17265359	.	-	.	Parent=Os10t0467850-00
Chr10	irgsp1_rep	three_prime_UTR	17264657	17265242	.	-	.	Parent=Os10t0467850-00
Chr10	irgsp1_rep	three_prime_UTR	17264095	17264580	.	-	.	Parent=Os10t0467850-00
Chr10	irgsp1_rep	three_prime_UTR	17263169	17263664	.	-	.	Parent=Os10t0467850-00
Chr10	irgsp1_rep	three_prime_UTR	17262646	17262692	.	-	.	Parent=Os10t0467850-00
Chr10	irgsp1_rep	three_prime_UTR	17262395	17262531	.	-	.	Parent=Os10t0467850-00
Chr10	irgsp1_rep	three_prime_UTR	17262014	17262293	.	-	.	Parent=Os10t0467850-00
Chr10	irgsp1_rep	mRNA	17267138	17273224	.	-	.	ID=Os10t0467900-01;Name=Os10t0467900-01;Locus_id=Os10g0467900;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK289265 (DDBJ%2C Best hit);ORF_evidence=Q9AV70 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Tyrosine-protein kinase%2C active site (IPR008266),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J100088F14;TENOR=Os10t0467900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	17273069	17273224	.	-	.	Parent=Os10t0467900-01
Chr10	irgsp1_rep	CDS	17270221	17273068	.	-	0	Parent=Os10t0467900-01
Chr10	irgsp1_rep	CDS	17267253	17267677	.	-	2	Parent=Os10t0467900-01
Chr10	irgsp1_rep	three_prime_UTR	17267138	17267252	.	-	.	Parent=Os10t0467900-01
Chr10	irgsp1_rep	mRNA	17296719	17298113	.	+	.	ID=Os10t0468250-00;Name=Os10t0468250-00;Locus_id=Os10g0468250;Note=Putative harbinger transposase-derived nuclease domain containing protein.;Transcript_evidence=AK335074 (DDBJ);ORF_evidence=Q8S819 (UniProt);GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Putative harbinger transposase-derived nuclease (IPR006912);TENOR=Os10t0468250-00
Chr10	irgsp1_rep	CDS	17296719	17297312	.	+	0	Parent=Os10t0468250-00
Chr10	irgsp1_rep	CDS	17297412	17298113	.	+	0	Parent=Os10t0468250-00
Chr10	irgsp1_rep	mRNA	17298120	17299994	.	-	.	ID=Os10t0468301-00;Name=Os10t0468301-00;Locus_id=Os10g0468301;CGSNL Gene Symbol=MSL35;CGSNL Gene Name=MYB/SANT-LIKE 35;Oryzabase Gene Symbol Synonym(s)=OsMSL35;Oryzabase Gene Name Synonym(s)=Myb/SANT-LIKE 35;Note=Hypothetical conserved gene.;Transcript_evidence=AK106587 (DDBJ%2C Secondary hit);ORF_evidence=Q60DP5 (UniProt);InterPro=Myb/SANT-like domain (IPR024752);Oryzabase=22942;Expression=AK106587;TENOR=Os10t0468301-00;KEGG=Os10t0468301-00
Chr10	irgsp1_rep	five_prime_UTR	17299994	17299994	.	-	.	Parent=Os10t0468301-00
Chr10	irgsp1_rep	CDS	17299863	17299993	.	-	0	Parent=Os10t0468301-00
Chr10	irgsp1_rep	CDS	17299523	17299665	.	-	1	Parent=Os10t0468301-00
Chr10	irgsp1_rep	CDS	17299039	17299422	.	-	2	Parent=Os10t0468301-00
Chr10	irgsp1_rep	CDS	17298361	17298944	.	-	2	Parent=Os10t0468301-00
Chr10	irgsp1_rep	three_prime_UTR	17298120	17298360	.	-	.	Parent=Os10t0468301-00
Chr10	irgsp1_rep	mRNA	17312261	17316877	.	+	.	ID=Os10t0468500-01;Name=Os10t0468500-01;Locus_id=Os10g0468500;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK120876 (DDBJ%2C Best hit);ORF_evidence=B9G664 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Tyrosine-protein kinase%2C active site (IPR008266),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023027F13;Expression=AK120876;TENOR=Os10t0468500-01;KEGG=Os10t0468500-01
Chr10	irgsp1_rep	five_prime_UTR	17312261	17312330	.	+	.	Parent=Os10t0468500-01
Chr10	irgsp1_rep	CDS	17312331	17315604	.	+	0	Parent=Os10t0468500-01
Chr10	irgsp1_rep	CDS	17316191	17316558	.	+	2	Parent=Os10t0468500-01
Chr10	irgsp1_rep	three_prime_UTR	17316559	17316877	.	+	.	Parent=Os10t0468500-01
Chr10	irgsp1_rep	mRNA	17312941	17314966	.	+	.	ID=Os10t0468500-02;Name=Os10t0468500-02;Locus_id=Os10g0468500;Note=Hypothetical conserved gene.;Transcript_evidence=AK110897 (DDBJ%2C Best hit);ORF_evidence=Q9AV65 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591);NIAS_FLcDNA=002-173-A07;TENOR=Os10t0468500-02
Chr10	irgsp1_rep	five_prime_UTR	17312941	17312942	.	+	.	Parent=Os10t0468500-02
Chr10	irgsp1_rep	CDS	17312943	17314966	.	+	0	Parent=Os10t0468500-02
Chr10	irgsp1_rep	mRNA	17316855	17317789	.	-	.	ID=Os10t0468600-01;Name=Os10t0468600-01;Locus_id=Os10g0468600;Note=Hypothetical protein.;Transcript_evidence=AK110660 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-169-F01;Expression=AK110660;TENOR=Os10t0468600-01;KEGG=Os10t0468600-01
Chr10	irgsp1_rep	five_prime_UTR	17317765	17317789	.	-	.	Parent=Os10t0468600-01
Chr10	irgsp1_rep	CDS	17317426	17317764	.	-	0	Parent=Os10t0468600-01
Chr10	irgsp1_rep	three_prime_UTR	17316855	17317425	.	-	.	Parent=Os10t0468600-01
Chr10	irgsp1_rep	mRNA	17319498	17321082	.	-	.	ID=Os10t0468800-00;Name=Os10t0468800-00;Locus_id=Os10g0468800;Note=Hypothetical conserved gene.;Transcript_evidence=AK363693 (DDBJ);ORF_evidence=B8BHE3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591);TENOR=Os10t0468800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	17320261	17321082	.	-	0	Parent=Os10t0468800-00
Chr10	irgsp1_rep	three_prime_UTR	17319498	17320260	.	-	.	Parent=Os10t0468800-00
Chr10	irgsp1_rep	mRNA	17330457	17335301	.	+	.	ID=Os10t0468950-01;Name=Os10t0468950-01;Locus_id=Os10g0468950;Note=Hypothetical protein.;Transcript_evidence=AK287567 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065028B09;TENOR=Os10t0468950-01;KEGG=Os10t0468950-01
Chr10	irgsp1_rep	five_prime_UTR	17330457	17330769	.	+	.	Parent=Os10t0468950-01
Chr10	irgsp1_rep	five_prime_UTR	17331139	17331292	.	+	.	Parent=Os10t0468950-01
Chr10	irgsp1_rep	five_prime_UTR	17331383	17334585	.	+	.	Parent=Os10t0468950-01
Chr10	irgsp1_rep	CDS	17334586	17335026	.	+	0	Parent=Os10t0468950-01
Chr10	irgsp1_rep	three_prime_UTR	17335027	17335301	.	+	.	Parent=Os10t0468950-01
Chr10	irgsp1_rep	mRNA	17330457	17335301	.	-	.	ID=Os10t0469000-01;Name=Os10t0469000-01;Locus_id=Os10g0469000;Note=Hypothetical conserved gene.;Transcript_evidence=AK240882 (DDBJ%2C Best hit);ORF_evidence=Q7XDK0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J065028A10;TENOR=Os10t0469000-01;KEGG=Os10t0469000-01
Chr10	irgsp1_rep	five_prime_UTR	17334918	17335301	.	-	.	Parent=Os10t0469000-01
Chr10	irgsp1_rep	CDS	17331462	17334917	.	-	0	Parent=Os10t0469000-01
Chr10	irgsp1_rep	three_prime_UTR	17331383	17331461	.	-	.	Parent=Os10t0469000-01
Chr10	irgsp1_rep	three_prime_UTR	17331139	17331292	.	-	.	Parent=Os10t0469000-01
Chr10	irgsp1_rep	three_prime_UTR	17330457	17330769	.	-	.	Parent=Os10t0469000-01
Chr10	irgsp1_rep	mRNA	17331234	17334887	.	-	.	ID=Os10t0469000-02;Name=Os10t0469000-02;Locus_id=Os10g0469000;Note=Similar to Leucine Rich Repeat family protein.;Transcript_evidence=AK287581 (DDBJ%2C Best hit);ORF_evidence=Q7XDK0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J065040N16;TENOR=Os10t0469000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	17334873	17334887	.	-	.	Parent=Os10t0469000-02
Chr10	irgsp1_rep	CDS	17331462	17334872	.	-	0	Parent=Os10t0469000-02
Chr10	irgsp1_rep	three_prime_UTR	17331234	17331461	.	-	.	Parent=Os10t0469000-02
Chr10	irgsp1_rep	mRNA	17345537	17349868	.	+	.	ID=Os10t0469100-01;Name=Os10t0469100-01;Locus_id=Os10g0469100;Note=Hypothetical protein.;Transcript_evidence=AK066147 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013055B11;Expression=AK066147;TENOR=Os10t0469100-01;KEGG=Os10t0469100-01
Chr10	irgsp1_rep	five_prime_UTR	17345537	17345911	.	+	.	Parent=Os10t0469100-01
Chr10	irgsp1_rep	five_prime_UTR	17346808	17346899	.	+	.	Parent=Os10t0469100-01
Chr10	irgsp1_rep	five_prime_UTR	17346976	17348489	.	+	.	Parent=Os10t0469100-01
Chr10	irgsp1_rep	CDS	17348490	17349056	.	+	0	Parent=Os10t0469100-01
Chr10	irgsp1_rep	three_prime_UTR	17349057	17349868	.	+	.	Parent=Os10t0469100-01
Chr10	irgsp1_rep	mRNA	17345627	17346179	.	+	.	ID=Os10t0469100-02;Name=Os10t0469100-02;Locus_id=Os10g0469100;Note=Hypothetical gene.;Transcript_evidence=AK108708 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-150-A08;Expression=AK108708;TENOR=Os10t0469100-02;KEGG=Os10t0469100-02
Chr10	irgsp1_rep	five_prime_UTR	17345627	17345627	.	+	.	Parent=Os10t0469100-02
Chr10	irgsp1_rep	CDS	17345628	17345915	.	+	0	Parent=Os10t0469100-02
Chr10	irgsp1_rep	three_prime_UTR	17345916	17346179	.	+	.	Parent=Os10t0469100-02
Chr10	irgsp1_rep	mRNA	17345628	17350070	.	+	.	ID=Os10t0469100-03;Name=Os10t0469100-03;Locus_id=Os10g0469100;Note=Hypothetical protein.;Transcript_evidence=AK121166 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023080J06;Expression=AK121166;TENOR=Os10t0469100-03;KEGG=Os10t0469100-03
Chr10	irgsp1_rep	five_prime_UTR	17345628	17345911	.	+	.	Parent=Os10t0469100-03
Chr10	irgsp1_rep	five_prime_UTR	17346819	17346899	.	+	.	Parent=Os10t0469100-03
Chr10	irgsp1_rep	five_prime_UTR	17346976	17348489	.	+	.	Parent=Os10t0469100-03
Chr10	irgsp1_rep	CDS	17348490	17349056	.	+	0	Parent=Os10t0469100-03
Chr10	irgsp1_rep	three_prime_UTR	17349057	17350070	.	+	.	Parent=Os10t0469100-03
Chr10	irgsp1_rep	mRNA	17346611	17349754	.	-	.	ID=Os10t0469300-00;Name=Os10t0469300-00;Locus_id=Os10g0469300;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XDJ7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);TENOR=Os10t0469300-00;KEGG=Os10t0469300-00
Chr10	irgsp1_rep	CDS	17346611	17349754	.	-	0	Parent=Os10t0469300-00
Chr10	irgsp1_rep	mRNA	17357738	17361914	.	-	.	ID=Os10t0469600-01;Name=Os10t0469600-01;Locus_id=Os10g0469600;Note=Similar to Leucine Rich Repeat family protein%2C expressed.;Transcript_evidence=AK241157 (DDBJ%2C Best hit);ORF_evidence=A3C5M1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J065114J03;TENOR=Os10t0469600-01;KEGG=Os10t0469600-01
Chr10	irgsp1_rep	five_prime_UTR	17361622	17361914	.	-	.	Parent=Os10t0469600-01
Chr10	irgsp1_rep	CDS	17358475	17361621	.	-	0	Parent=Os10t0469600-01
Chr10	irgsp1_rep	three_prime_UTR	17357738	17358474	.	-	.	Parent=Os10t0469600-01
Chr10	irgsp1_rep	mRNA	17365026	17366810	.	-	.	ID=Os10t0469700-01;Name=Os10t0469700-01;Locus_id=Os10g0469700;Note=Leucine-rich repeat%2C typical subtype containing protein.;Transcript_evidence=AK066165 (DDBJ%2C Best hit);ORF_evidence=A2Z8F0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591);NIAS_FLcDNA=J013052O14;Expression=AK066165;TENOR=Os10t0469700-01;KEGG=Os10t0469700-01
Chr10	irgsp1_rep	five_prime_UTR	17366768	17366810	.	-	.	Parent=Os10t0469700-01
Chr10	irgsp1_rep	CDS	17365232	17366767	.	-	0	Parent=Os10t0469700-01
Chr10	irgsp1_rep	three_prime_UTR	17365026	17365231	.	-	.	Parent=Os10t0469700-01
Chr10	irgsp1_rep	mRNA	17374458	17378953	.	+	.	ID=Os10t0469900-01;Name=Os10t0469900-01;Locus_id=Os10g0469900;Oryzabase Gene Symbol Synonym(s)=POT;Oryzabase Gene Name Synonym(s)=POT protein;Note=TGF-beta receptor%2C type I/II extracellular region family protein.;Transcript_evidence=AK105737 (DDBJ%2C Best hit),AK059075 (DDBJ%2C Best hit);ORF_evidence=NP_001147986.1 (RefSeq);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=001-202-A02,001-022-A04;Oryzabase=23491;TENOR=Os10t0469900-01
Chr10	irgsp1_rep	five_prime_UTR	17374458	17374545	.	+	.	Parent=Os10t0469900-01
Chr10	irgsp1_rep	CDS	17374546	17374666	.	+	0	Parent=Os10t0469900-01
Chr10	irgsp1_rep	CDS	17374751	17374968	.	+	2	Parent=Os10t0469900-01
Chr10	irgsp1_rep	CDS	17377320	17378804	.	+	0	Parent=Os10t0469900-01
Chr10	irgsp1_rep	three_prime_UTR	17378805	17378953	.	+	.	Parent=Os10t0469900-01
Chr10	irgsp1_rep	mRNA	17377340	17378944	.	+	.	ID=Os10t0469900-02;Name=Os10t0469900-02;Locus_id=Os10g0469900;Oryzabase Gene Symbol Synonym(s)=POT;Oryzabase Gene Name Synonym(s)=POT protein;Note=Similar to peptide transporter PTR2.;Transcript_evidence=AK101007 (DDBJ%2C Best hit);ORF_evidence=NP_001147986.1 (RefSeq);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J023148F24;Oryzabase=23491;Expression=AK101007;TENOR=Os10t0469900-02;KEGG=Os10t0469900-02
Chr10	irgsp1_rep	five_prime_UTR	17377340	17377340	.	+	.	Parent=Os10t0469900-02
Chr10	irgsp1_rep	CDS	17377341	17378804	.	+	0	Parent=Os10t0469900-02
Chr10	irgsp1_rep	three_prime_UTR	17378805	17378944	.	+	.	Parent=Os10t0469900-02
Chr10	irgsp1_rep	mRNA	17389132	17393941	.	-	.	ID=Os10t0470100-01;Name=Os10t0470100-01;Locus_id=Os10g0470100;Note=Conserved hypothetical protein.;Transcript_evidence=AK242171 (DDBJ%2C Best hit),AK288013 (DDBJ%2C Best hit);ORF_evidence=NP_001173683.1 (RefSeq);NIAS_FLcDNA=J075158A09,J075120I04;TENOR=Os10t0470100-01
Chr10	irgsp1_rep	five_prime_UTR	17393793	17393941	.	-	.	Parent=Os10t0470100-01
Chr10	irgsp1_rep	CDS	17393525	17393792	.	-	0	Parent=Os10t0470100-01
Chr10	irgsp1_rep	CDS	17393431	17393447	.	-	2	Parent=Os10t0470100-01
Chr10	irgsp1_rep	three_prime_UTR	17393336	17393430	.	-	.	Parent=Os10t0470100-01
Chr10	irgsp1_rep	three_prime_UTR	17391439	17391495	.	-	.	Parent=Os10t0470100-01
Chr10	irgsp1_rep	three_prime_UTR	17389132	17390100	.	-	.	Parent=Os10t0470100-01
Chr10	irgsp1_rep	mRNA	17415606	17420814	.	+	.	ID=Os10t0470700-01;Name=Os10t0470700-01;Locus_id=Os10g0470700;CGSNL Gene Symbol=PTR3;CGSNL Gene Name=PROTEIN TRANSPORTER 3;Oryzabase Gene Symbol Synonym(s)=OsPTR3%2C OsNPF5.5%2C NPF5.5;Oryzabase Gene Name Synonym(s)=NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 5.5;Note=Similar to Peptide transporter.;Transcript_evidence=AK101055 (DDBJ%2C Best hit);ORF_evidence=NP_199417.1 (RefSeq);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J033020K03;Oryzabase=8911;Expression=AK101055;TENOR=Os10t0470700-01;KEGG=Os10t0470700-01
Chr10	irgsp1_rep	five_prime_UTR	17415606	17415736	.	+	.	Parent=Os10t0470700-01
Chr10	irgsp1_rep	CDS	17415737	17415875	.	+	0	Parent=Os10t0470700-01
Chr10	irgsp1_rep	CDS	17418292	17418509	.	+	2	Parent=Os10t0470700-01
Chr10	irgsp1_rep	CDS	17419198	17420673	.	+	0	Parent=Os10t0470700-01
Chr10	irgsp1_rep	three_prime_UTR	17420674	17420814	.	+	.	Parent=Os10t0470700-01
Chr10	irgsp1_rep	mRNA	17431371	17433272	.	-	.	ID=Os10t0470801-00;Name=Os10t0470801-00;Locus_id=Os10g0470801;Note=Hypothetical gene.;Transcript_evidence=BT018887 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0470801-00
Chr10	irgsp1_rep	five_prime_UTR	17432377	17433272	.	-	.	Parent=Os10t0470801-00
Chr10	irgsp1_rep	CDS	17431692	17432376	.	-	0	Parent=Os10t0470801-00
Chr10	irgsp1_rep	CDS	17431371	17431614	.	-	2	Parent=Os10t0470801-00
Chr10	irgsp1_rep	mRNA	17431265	17436597	.	+	.	ID=Os10t0470900-01;Name=Os10t0470900-01;Locus_id=Os10g0470900;Oryzabase Gene Symbol Synonym(s)=RBPJ%2C RBP-J;Oryzabase Gene Name Synonym(s)=RNA binding protein J;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK120962 (DDBJ%2C Best hit);ORF_evidence=Q9FWK8 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023039O15;Oryzabase=20899;Expression=AK120962;TENOR=Os10t0470900-01;KEGG=Os10t0470900-01
Chr10	irgsp1_rep	five_prime_UTR	17431265	17431393	.	+	.	Parent=Os10t0470900-01
Chr10	irgsp1_rep	CDS	17431394	17431615	.	+	0	Parent=Os10t0470900-01
Chr10	irgsp1_rep	CDS	17431693	17432865	.	+	0	Parent=Os10t0470900-01
Chr10	irgsp1_rep	three_prime_UTR	17432866	17436597	.	+	.	Parent=Os10t0470900-01
Chr10	irgsp1_rep	mRNA	17432719	17433164	.	+	.	ID=Os10t0470900-02;Name=Os10t0470900-02;Locus_id=Os10g0470900;Oryzabase Gene Symbol Synonym(s)=RBPJ%2C RBP-J;Oryzabase Gene Name Synonym(s)=RNA binding protein J;Note=Hypothetical conserved gene.;Transcript_evidence=AK059172 (DDBJ%2C Best hit);ORF_evidence=Q9FWK8 (UniProt);NIAS_FLcDNA=001-023-F02;Oryzabase=20899;Expression=AK059172;TENOR=Os10t0470900-02;KEGG=Os10t0470900-02
Chr10	irgsp1_rep	CDS	17432719	17432865	.	+	0	Parent=Os10t0470900-02
Chr10	irgsp1_rep	three_prime_UTR	17432866	17433164	.	+	.	Parent=Os10t0470900-02
Chr10	irgsp1_rep	mRNA	17432906	17434277	.	+	.	ID=Os10t0470900-03;Name=Os10t0470900-03;Locus_id=Os10g0470900;Oryzabase Gene Symbol Synonym(s)=RBPJ%2C RBP-J;Oryzabase Gene Name Synonym(s)=RNA binding protein J;Note=Hypothetical conserved gene.;Transcript_evidence=AK062625 (DDBJ%2C Best hit);ORF_evidence=B9G669 (UniProt);NIAS_FLcDNA=001-105-C02;Oryzabase=20899;Expression=AK062625;TENOR=Os10t0470900-03;KEGG=Os10t0470900-03
Chr10	irgsp1_rep	five_prime_UTR	17432906	17433001	.	+	.	Parent=Os10t0470900-03
Chr10	irgsp1_rep	five_prime_UTR	17433779	17433783	.	+	.	Parent=Os10t0470900-03
Chr10	irgsp1_rep	CDS	17433784	17433960	.	+	0	Parent=Os10t0470900-03
Chr10	irgsp1_rep	three_prime_UTR	17433961	17434277	.	+	.	Parent=Os10t0470900-03
Chr10	irgsp1_rep	mRNA	17439581	17440872	.	+	.	ID=Os10t0471000-01;Name=Os10t0471000-01;Locus_id=Os10g0471000;CGSNL Gene Symbol=DUF810.7;CGSNL Gene Name=DUF810 FAMILY MEMBER 7;Oryzabase Gene Symbol Synonym(s)=OsDUF810.7;Oryzabase Gene Name Synonym(s)=domains of unknown function 810.7%2C DUF810 family member 7;Note=Protein of unknown function DUF810 domain containing protein.;Transcript_evidence=AK070210 (DDBJ%2C Best hit);ORF_evidence=Q9FWK7 (UniProt);InterPro=Protein of unknown function DUF810 (IPR008528),Mammalian uncoordinated homology 13%2C domain 2 (IPR014772);NIAS_FLcDNA=J023046M17;Oryzabase=22677;TENOR=Os10t0471000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	17439581	17439620	.	+	0	Parent=Os10t0471000-01
Chr10	irgsp1_rep	CDS	17439715	17440667	.	+	2	Parent=Os10t0471000-01
Chr10	irgsp1_rep	three_prime_UTR	17440668	17440872	.	+	.	Parent=Os10t0471000-01
Chr10	irgsp1_rep	mRNA	17448995	17454855	.	-	.	ID=Os10t0471100-01;Name=Os10t0471100-01;Locus_id=Os10g0471100;RAP-DB Gene Symbol Synonym(s)=WDA1%2C Wda1%2C wda1%2C OS-CER1%2C OsGL1-5;RAP-DB Gene Name Synonym(s)=WAX-DEFICIENT ANTHER 1%2C Wax-deficient anther1%2C Wax-deficient anther 1%2C WDA1 protein%2C Glossy1-homologous gene 5;CGSNL Gene Symbol=WDA1;CGSNL Gene Name=WAX-DEFICIENT ANTHER 1;Oryzabase Gene Symbol Synonym(s)=OsWDA1%2C Wda1%2C wda1%2C OS-CER1%2C OsGL1-5;Oryzabase Gene Name Synonym(s)=Wax-deficient anther1%2C Wax-deficient anther 1%2C WDA1 protein%2C Glossy1-homologous gene 5;Note=Protein with high similarity to proteins involved in wax production%2C Cuticular wax biosynthesis;Transcript_evidence=AK100751 (Genbank);ORF_evidence=Q9FWK6 (UniProt),Q7XDI3 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Fatty acid hydroxylase (IPR006694),Uncharacterised domain Wax2%2C C-terminal (IPR021940);NIAS_FLcDNA=J023118L15;Manual Curation=August 4%2C 2009;Literature_PMID=17138699;Oryzabase=7492;Expression=AK100751;TENOR=Os10t0471100-01;KEGG=Os10t0471100-01
Chr10	irgsp1_rep	five_prime_UTR	17454673	17454855	.	-	.	Parent=Os10t0471100-01
Chr10	irgsp1_rep	CDS	17454613	17454672	.	-	0	Parent=Os10t0471100-01
Chr10	irgsp1_rep	CDS	17453925	17454148	.	-	0	Parent=Os10t0471100-01
Chr10	irgsp1_rep	CDS	17453560	17453792	.	-	1	Parent=Os10t0471100-01
Chr10	irgsp1_rep	CDS	17451658	17451877	.	-	2	Parent=Os10t0471100-01
Chr10	irgsp1_rep	CDS	17450714	17451095	.	-	1	Parent=Os10t0471100-01
Chr10	irgsp1_rep	CDS	17450519	17450626	.	-	0	Parent=Os10t0471100-01
Chr10	irgsp1_rep	CDS	17449990	17450190	.	-	0	Parent=Os10t0471100-01
Chr10	irgsp1_rep	CDS	17449807	17449905	.	-	0	Parent=Os10t0471100-01
Chr10	irgsp1_rep	CDS	17449534	17449710	.	-	0	Parent=Os10t0471100-01
Chr10	irgsp1_rep	CDS	17449282	17449443	.	-	0	Parent=Os10t0471100-01
Chr10	irgsp1_rep	three_prime_UTR	17448995	17449281	.	-	.	Parent=Os10t0471100-01
Chr10	irgsp1_rep	mRNA	17453389	17454767	.	-	.	ID=Os10t0471100-02;Name=Os10t0471100-02;Locus_id=Os10g0471100;CGSNL Gene Symbol=WDA1;CGSNL Gene Name=WAX-DEFICIENT ANTHER 1;Oryzabase Gene Symbol Synonym(s)=OsWDA1%2C Wda1%2C wda1%2C OS-CER1%2C OsGL1-5;Oryzabase Gene Name Synonym(s)=Wax-deficient anther1%2C Wax-deficient anther 1%2C WDA1 protein%2C Glossy1-homologous gene 5;Note=Similar to CER1.;Transcript_evidence=AK121097 (DDBJ%2C Best hit);ORF_evidence=Q9XH51 (UniProt);NIAS_FLcDNA=J023068L20;Oryzabase=7492;Expression=AK121097;TENOR=Os10t0471100-02;KEGG=Os10t0471100-02
Chr10	irgsp1_rep	five_prime_UTR	17454673	17454767	.	-	.	Parent=Os10t0471100-02
Chr10	irgsp1_rep	CDS	17454613	17454672	.	-	0	Parent=Os10t0471100-02
Chr10	irgsp1_rep	CDS	17453925	17454148	.	-	0	Parent=Os10t0471100-02
Chr10	irgsp1_rep	CDS	17453552	17453792	.	-	1	Parent=Os10t0471100-02
Chr10	irgsp1_rep	three_prime_UTR	17453389	17453551	.	-	.	Parent=Os10t0471100-02
Chr10	irgsp1_rep	mRNA	17471631	17474798	.	+	.	ID=Os10t0471300-01;Name=Os10t0471300-01;Locus_id=Os10g0471300;CGSNL Gene Symbol=CYN;CGSNL Gene Name=CYANASE;Oryzabase Gene Symbol Synonym(s)=OsCYN;Oryzabase Gene Name Synonym(s)=cyanase;Note=Similar to Cyanate lyase (CYN).;Transcript_evidence=AK105134 (DDBJ%2C Best hit);ORF_evidence=Q9FWK4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: cyanate metabolic process (GO:0009439),Molecular Function: DNA binding (GO:0003677),Molecular Function: cyanate hydratase activity (GO:0008824),Molecular Function: hydro-lyase activity (GO:0016836);InterPro=Cyanate lyase%2C C-terminal (IPR003712),Cyanase (IPR008076),Lambda repressor-like%2C DNA-binding (IPR010982);NIAS_FLcDNA=001-102-A03;Oryzabase=9400;Expression=AK105134;TENOR=Os10t0471300-01;KEGG=Os10t0471300-01 (EC:4.2.1.104)
Chr10	irgsp1_rep	five_prime_UTR	17471631	17471740	.	+	.	Parent=Os10t0471300-01
Chr10	irgsp1_rep	CDS	17471741	17472021	.	+	0	Parent=Os10t0471300-01
Chr10	irgsp1_rep	CDS	17473632	17473703	.	+	1	Parent=Os10t0471300-01
Chr10	irgsp1_rep	CDS	17474111	17474219	.	+	1	Parent=Os10t0471300-01
Chr10	irgsp1_rep	CDS	17474553	17474597	.	+	0	Parent=Os10t0471300-01
Chr10	irgsp1_rep	three_prime_UTR	17474598	17474798	.	+	.	Parent=Os10t0471300-01
Chr10	irgsp1_rep	mRNA	17475528	17484166	.	-	.	ID=Os10t0471350-01;Name=Os10t0471350-01;Locus_id=Os10g0471350;Note=Similar to helicase domain-containing protein.;Transcript_evidence=AK243559 (DDBJ%2C Best hit);ORF_evidence=XP_002879582.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C ATP-dependent%2C DEAH-box type%2C conserved site (IPR002464),Helicase-associated domain (IPR007502),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),Domain of unknown function DUF1605 (IPR011709),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J100080D23;TENOR=Os10t0471350-01;KEGG=Os10t0471350-01
Chr10	irgsp1_rep	five_prime_UTR	17484036	17484166	.	-	.	Parent=Os10t0471350-01
Chr10	irgsp1_rep	CDS	17483841	17484035	.	-	0	Parent=Os10t0471350-01
Chr10	irgsp1_rep	CDS	17483194	17483339	.	-	0	Parent=Os10t0471350-01
Chr10	irgsp1_rep	CDS	17482842	17482941	.	-	1	Parent=Os10t0471350-01
Chr10	irgsp1_rep	CDS	17482550	17482753	.	-	0	Parent=Os10t0471350-01
Chr10	irgsp1_rep	CDS	17482301	17482396	.	-	0	Parent=Os10t0471350-01
Chr10	irgsp1_rep	CDS	17481381	17481656	.	-	0	Parent=Os10t0471350-01
Chr10	irgsp1_rep	CDS	17480499	17480702	.	-	0	Parent=Os10t0471350-01
Chr10	irgsp1_rep	CDS	17480258	17480410	.	-	0	Parent=Os10t0471350-01
Chr10	irgsp1_rep	CDS	17479749	17479841	.	-	0	Parent=Os10t0471350-01
Chr10	irgsp1_rep	CDS	17478950	17479164	.	-	0	Parent=Os10t0471350-01
Chr10	irgsp1_rep	CDS	17478180	17478339	.	-	1	Parent=Os10t0471350-01
Chr10	irgsp1_rep	CDS	17477829	17478102	.	-	0	Parent=Os10t0471350-01
Chr10	irgsp1_rep	CDS	17477532	17477724	.	-	2	Parent=Os10t0471350-01
Chr10	irgsp1_rep	CDS	17477083	17477269	.	-	1	Parent=Os10t0471350-01
Chr10	irgsp1_rep	CDS	17476237	17476605	.	-	0	Parent=Os10t0471350-01
Chr10	irgsp1_rep	CDS	17475729	17475860	.	-	0	Parent=Os10t0471350-01
Chr10	irgsp1_rep	three_prime_UTR	17475528	17475728	.	-	.	Parent=Os10t0471350-01
Chr10	irgsp1_rep	mRNA	17484899	17490805	.	-	.	ID=Os10t0471400-01;Name=Os10t0471400-01;Locus_id=Os10g0471400;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK067894 (DDBJ%2C Best hit),AK064870 (DDBJ%2C Best hit);ORF_evidence=NP_194589.2 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide TPR-1 (IPR001440),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J013123D09,J013000J02;Expression=AK067894;TENOR=Os10t0471400-01;KEGG=Os10t0471400-01
Chr10	irgsp1_rep	five_prime_UTR	17490532	17490805	.	-	.	Parent=Os10t0471400-01
Chr10	irgsp1_rep	five_prime_UTR	17490001	17490047	.	-	.	Parent=Os10t0471400-01
Chr10	irgsp1_rep	CDS	17489749	17490000	.	-	0	Parent=Os10t0471400-01
Chr10	irgsp1_rep	CDS	17488898	17489147	.	-	0	Parent=Os10t0471400-01
Chr10	irgsp1_rep	CDS	17487567	17488780	.	-	2	Parent=Os10t0471400-01
Chr10	irgsp1_rep	CDS	17486954	17487104	.	-	0	Parent=Os10t0471400-01
Chr10	irgsp1_rep	CDS	17486423	17486739	.	-	2	Parent=Os10t0471400-01
Chr10	irgsp1_rep	three_prime_UTR	17484899	17486422	.	-	.	Parent=Os10t0471400-01
Chr10	irgsp1_rep	mRNA	17502268	17503202	.	-	.	ID=Os10t0471700-01;Name=Os10t0471700-01;Locus_id=Os10g0471700;CGSNL Gene Symbol=KRP4;CGSNL Gene Name=KIP-RELATED PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OsiICK6%2C Orysa%3BKRP4%2C OrysaICK6%2C Orysa%3BICK6%2C OsKRP4%2C OsICK6%2C ICK6;Oryzabase Gene Name Synonym(s)=Cyclin-dependent kinase inhibitor 6%2C KIP-related protein 4%2C inhibitor of cyclin-dependent kinase 6;Note=Similar to cDNA clone:J033067M05%2C full insert sequence.;Transcript_evidence=AK064173 (DDBJ%2C Best hit);ORF_evidence=B7EMP9 (UniProt);NIAS_FLcDNA=002-104-A07;Oryzabase=12359;Expression=AK064173;TENOR=Os10t0471700-01;KEGG=Os10t0471700-01
Chr10	irgsp1_rep	five_prime_UTR	17503059	17503202	.	-	.	Parent=Os10t0471700-01
Chr10	irgsp1_rep	CDS	17502657	17503058	.	-	0	Parent=Os10t0471700-01
Chr10	irgsp1_rep	three_prime_UTR	17502268	17502656	.	-	.	Parent=Os10t0471700-01
Chr10	irgsp1_rep	mRNA	17499846	17503185	.	-	.	ID=Os10t0471700-02;Name=Os10t0471700-02;Locus_id=Os10g0471700;RAP-DB Gene Symbol Synonym(s)=OsiICK6%2C OsKRP4;RAP-DB Gene Name Synonym(s)=inhibitor of cyclin-dependent kinase 6%2C KIP-related protein 4;CGSNL Gene Symbol=KRP4;CGSNL Gene Name=KIP-RELATED PROTEIN 4;Oryzabase Gene Symbol Synonym(s)=OsiICK6%2C Orysa%3BKRP4%2C OrysaICK6%2C Orysa%3BICK6%2C OsKRP4%2C OsICK6%2C ICK6;Oryzabase Gene Name Synonym(s)=Cyclin-dependent kinase inhibitor 6%2C KIP-related protein 4%2C inhibitor of cyclin-dependent kinase 6;Note=Cyclin-dependent kinase inhibitor%2C Kip-related protein%2C Plant growth and development;Transcript_evidence=AK073804;ORF_evidence=Q7XDH8;GO=Biological Process: cell cycle arrest (GO:0007050),Molecular Function: cyclin-dependent protein serine/threonine kinase inhibitor activity (GO:0004861),Cellular Component: nucleus (GO:0005634);InterPro=Cyclin-dependent kinase inhibitor (IPR003175);NIAS_FLcDNA=J033067M05;Manual Curation=September 7%2C 2020;Literature_PMID=24686568,21558459;Oryzabase=12359;Expression=AK073804;TENOR=Os10t0471700-02;Subcellular location=nucleus (GO:0005634)
Chr10	irgsp1_rep	five_prime_UTR	17503059	17503185	.	-	.	Parent=Os10t0471700-02
Chr10	irgsp1_rep	CDS	17502745	17503058	.	-	0	Parent=Os10t0471700-02
Chr10	irgsp1_rep	CDS	17500372	17500575	.	-	1	Parent=Os10t0471700-02
Chr10	irgsp1_rep	CDS	17500159	17500225	.	-	1	Parent=Os10t0471700-02
Chr10	irgsp1_rep	three_prime_UTR	17499846	17500158	.	-	.	Parent=Os10t0471700-02
Chr10	irgsp1_rep	mRNA	17519727	17519845	.	-	.	ID=Os10t0472050-00;Name=Os10t0472050-00;Locus_id=Os10g0472050;Note=Non-protein coding transcript.;Transcript_evidence=AM234775 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0472050-00
Chr10	irgsp1_rep	exon	17519727	17519845	.	-	.	Parent=Os10t0472050-00
Chr10	irgsp1_rep	mRNA	17544776	17547680	.	+	.	ID=Os10t0472400-01;Name=Os10t0472400-01;Locus_id=Os10g0472400;Note=Similar to Thioredoxin.;Transcript_evidence=AK121929 (DDBJ%2C Best hit);ORF_evidence=B6TIJ3 (UniProt);InterPro=Domain of unknown function DUF862%2C eukaryotic (IPR008580);NIAS_FLcDNA=J033106J23;TENOR=Os10t0472400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	17544776	17544827	.	+	.	Parent=Os10t0472400-01
Chr10	irgsp1_rep	five_prime_UTR	17545473	17545506	.	+	.	Parent=Os10t0472400-01
Chr10	irgsp1_rep	CDS	17545507	17545515	.	+	0	Parent=Os10t0472400-01
Chr10	irgsp1_rep	CDS	17545629	17545726	.	+	0	Parent=Os10t0472400-01
Chr10	irgsp1_rep	CDS	17546679	17546995	.	+	1	Parent=Os10t0472400-01
Chr10	irgsp1_rep	CDS	17547129	17547580	.	+	2	Parent=Os10t0472400-01
Chr10	irgsp1_rep	three_prime_UTR	17547581	17547680	.	+	.	Parent=Os10t0472400-01
Chr10	irgsp1_rep	mRNA	17547960	17548377	.	-	.	ID=Os10t0472501-00;Name=Os10t0472501-00;Locus_id=Os10g0472501;Note=Hypothetical conserved gene.;Transcript_evidence=tplb0015l09 (Wheat FLcDNA);ORF_evidence=Q9FW60 (UniProt);TENOR=Os10t0472501-00;KEGG=Os10t0472501-00
Chr10	irgsp1_rep	CDS	17547961	17548377	.	-	0	Parent=Os10t0472501-00
Chr10	irgsp1_rep	three_prime_UTR	17547960	17547960	.	-	.	Parent=Os10t0472501-00
Chr10	irgsp1_rep	mRNA	17564167	17571455	.	+	.	ID=Os10t0472900-01;Name=Os10t0472900-01;Locus_id=Os10g0472900;Note=Thiolase-like%2C subgroup domain containing protein.;Transcript_evidence=AK120294 (DDBJ%2C Best hit);ORF_evidence=B9G676 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: metabolic process (GO:0008152),Biological Process: lipid biosynthetic process (GO:0008610),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Very-long-chain 3-ketoacyl-CoA synthase (IPR012392),FAE1/Type III polyketide synthase-like protein (IPR013601),3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (IPR013747),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);NIAS_FLcDNA=J013051A05;Expression=AK120294;TENOR=Os10t0472900-01;KEGG=Os10t0472900-01
Chr10	irgsp1_rep	five_prime_UTR	17564167	17564359	.	+	.	Parent=Os10t0472900-01
Chr10	irgsp1_rep	five_prime_UTR	17565126	17566485	.	+	.	Parent=Os10t0472900-01
Chr10	irgsp1_rep	CDS	17566486	17567057	.	+	0	Parent=Os10t0472900-01
Chr10	irgsp1_rep	CDS	17570138	17570963	.	+	1	Parent=Os10t0472900-01
Chr10	irgsp1_rep	three_prime_UTR	17570964	17571455	.	+	.	Parent=Os10t0472900-01
Chr10	irgsp1_rep	mRNA	17581058	17581736	.	+	.	ID=Os10t0473200-01;Name=Os10t0473200-01;Locus_id=Os10g0473200;Note=Conserved hypothetical protein.;Transcript_evidence=AK105229 (DDBJ%2C Best hit);ORF_evidence=Q9FW56 (UniProt);NIAS_FLcDNA=001-111-E08;Expression=AK105229;TENOR=Os10t0473200-01;KEGG=Os10t0473200-01
Chr10	irgsp1_rep	five_prime_UTR	17581058	17581058	.	+	.	Parent=Os10t0473200-01
Chr10	irgsp1_rep	CDS	17581059	17581247	.	+	0	Parent=Os10t0473200-01
Chr10	irgsp1_rep	three_prime_UTR	17581248	17581736	.	+	.	Parent=Os10t0473200-01
Chr10	irgsp1_rep	mRNA	17584547	17592697	.	-	.	ID=Os10t0473400-01;Name=Os10t0473400-01;Locus_id=Os10g0473400;Note=Beta-glucosidase%2C GBA2 type domain containing protein.;Transcript_evidence=AK067795 (DDBJ%2C Best hit);ORF_evidence=B8BHF7 (UniProt);GO=Biological Process: sphingolipid metabolic process (GO:0006665),Biological Process: glucosylceramide catabolic process (GO:0006680),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: catalytic activity (GO:0003824),Molecular Function: glucosylceramidase activity (GO:0004348);InterPro=Glucosylceramidase (IPR006775),Six-hairpin glycosidase-like (IPR008928),Six-hairpin glycosidase (IPR012341),Beta-glucosidase%2C GBA2 type (IPR014551),Beta-glucosidase%2C GBA2 type%2C N-terminal (IPR024462);NIAS_FLcDNA=J013118D11;Expression=AK067795;TENOR=Os10t0473400-01;KEGG=Os10t0473400-01
Chr10	irgsp1_rep	five_prime_UTR	17592300	17592697	.	-	.	Parent=Os10t0473400-01
Chr10	irgsp1_rep	CDS	17592219	17592299	.	-	0	Parent=Os10t0473400-01
Chr10	irgsp1_rep	CDS	17592023	17592133	.	-	0	Parent=Os10t0473400-01
Chr10	irgsp1_rep	CDS	17591840	17591896	.	-	0	Parent=Os10t0473400-01
Chr10	irgsp1_rep	CDS	17591633	17591709	.	-	0	Parent=Os10t0473400-01
Chr10	irgsp1_rep	CDS	17591426	17591525	.	-	1	Parent=Os10t0473400-01
Chr10	irgsp1_rep	CDS	17590682	17590755	.	-	0	Parent=Os10t0473400-01
Chr10	irgsp1_rep	CDS	17589977	17590077	.	-	1	Parent=Os10t0473400-01
Chr10	irgsp1_rep	CDS	17589644	17589747	.	-	2	Parent=Os10t0473400-01
Chr10	irgsp1_rep	CDS	17588968	17589021	.	-	0	Parent=Os10t0473400-01
Chr10	irgsp1_rep	CDS	17588630	17588685	.	-	0	Parent=Os10t0473400-01
Chr10	irgsp1_rep	CDS	17588508	17588546	.	-	1	Parent=Os10t0473400-01
Chr10	irgsp1_rep	CDS	17588276	17588417	.	-	1	Parent=Os10t0473400-01
Chr10	irgsp1_rep	CDS	17587988	17588172	.	-	0	Parent=Os10t0473400-01
Chr10	irgsp1_rep	CDS	17587364	17587431	.	-	1	Parent=Os10t0473400-01
Chr10	irgsp1_rep	CDS	17587074	17587146	.	-	2	Parent=Os10t0473400-01
Chr10	irgsp1_rep	CDS	17586873	17586934	.	-	1	Parent=Os10t0473400-01
Chr10	irgsp1_rep	CDS	17585435	17586716	.	-	2	Parent=Os10t0473400-01
Chr10	irgsp1_rep	CDS	17584939	17585197	.	-	1	Parent=Os10t0473400-01
Chr10	irgsp1_rep	three_prime_UTR	17584547	17584938	.	-	.	Parent=Os10t0473400-01
Chr10	irgsp1_rep	mRNA	17586140	17592390	.	-	.	ID=Os10t0473400-02;Name=Os10t0473400-02;Locus_id=Os10g0473400;Note=Similar to predicted protein.;Transcript_evidence=AK068550 (DDBJ%2C Best hit);ORF_evidence=B8BHF7 (UniProt);NIAS_FLcDNA=J013157G09;Expression=AK068550;TENOR=Os10t0473400-02;KEGG=Os10t0473400-02
Chr10	irgsp1_rep	five_prime_UTR	17592300	17592390	.	-	.	Parent=Os10t0473400-02
Chr10	irgsp1_rep	CDS	17592219	17592299	.	-	0	Parent=Os10t0473400-02
Chr10	irgsp1_rep	CDS	17592023	17592133	.	-	0	Parent=Os10t0473400-02
Chr10	irgsp1_rep	CDS	17591840	17591896	.	-	0	Parent=Os10t0473400-02
Chr10	irgsp1_rep	CDS	17591643	17591709	.	-	0	Parent=Os10t0473400-02
Chr10	irgsp1_rep	CDS	17591426	17591525	.	-	2	Parent=Os10t0473400-02
Chr10	irgsp1_rep	CDS	17590683	17590755	.	-	1	Parent=Os10t0473400-02
Chr10	irgsp1_rep	three_prime_UTR	17590682	17590682	.	-	.	Parent=Os10t0473400-02
Chr10	irgsp1_rep	three_prime_UTR	17590058	17590077	.	-	.	Parent=Os10t0473400-02
Chr10	irgsp1_rep	three_prime_UTR	17589977	17590038	.	-	.	Parent=Os10t0473400-02
Chr10	irgsp1_rep	three_prime_UTR	17589644	17589747	.	-	.	Parent=Os10t0473400-02
Chr10	irgsp1_rep	three_prime_UTR	17588968	17589021	.	-	.	Parent=Os10t0473400-02
Chr10	irgsp1_rep	three_prime_UTR	17588630	17588685	.	-	.	Parent=Os10t0473400-02
Chr10	irgsp1_rep	three_prime_UTR	17588504	17588546	.	-	.	Parent=Os10t0473400-02
Chr10	irgsp1_rep	three_prime_UTR	17588276	17588417	.	-	.	Parent=Os10t0473400-02
Chr10	irgsp1_rep	three_prime_UTR	17587988	17588172	.	-	.	Parent=Os10t0473400-02
Chr10	irgsp1_rep	three_prime_UTR	17587364	17587431	.	-	.	Parent=Os10t0473400-02
Chr10	irgsp1_rep	three_prime_UTR	17587074	17587146	.	-	.	Parent=Os10t0473400-02
Chr10	irgsp1_rep	three_prime_UTR	17586873	17586934	.	-	.	Parent=Os10t0473400-02
Chr10	irgsp1_rep	three_prime_UTR	17586140	17586716	.	-	.	Parent=Os10t0473400-02
Chr10	irgsp1_rep	mRNA	17584681	17591659	.	-	.	ID=Os10t0473400-03;Name=Os10t0473400-03;Locus_id=Os10g0473400;Note=Similar to catalytic.;Transcript_evidence=AK073558 (DDBJ%2C Best hit);ORF_evidence=B8BHF7 (UniProt);GO=Biological Process: sphingolipid metabolic process (GO:0006665),Biological Process: glucosylceramide catabolic process (GO:0006680),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: catalytic activity (GO:0003824),Molecular Function: glucosylceramidase activity (GO:0004348);InterPro=Glucosylceramidase (IPR006775),Six-hairpin glycosidase-like (IPR008928),Six-hairpin glycosidase (IPR012341),Beta-glucosidase%2C GBA2 type (IPR014551),Beta-glucosidase%2C GBA2 type%2C N-terminal (IPR024462);NIAS_FLcDNA=J033044N24;Expression=AK073558;TENOR=Os10t0473400-03;KEGG=Os10t0473400-03
Chr10	irgsp1_rep	five_prime_UTR	17591659	17591659	.	-	.	Parent=Os10t0473400-03
Chr10	irgsp1_rep	CDS	17591633	17591658	.	-	0	Parent=Os10t0473400-03
Chr10	irgsp1_rep	CDS	17591426	17591525	.	-	1	Parent=Os10t0473400-03
Chr10	irgsp1_rep	CDS	17590682	17590755	.	-	0	Parent=Os10t0473400-03
Chr10	irgsp1_rep	CDS	17589977	17590077	.	-	1	Parent=Os10t0473400-03
Chr10	irgsp1_rep	CDS	17589644	17589747	.	-	2	Parent=Os10t0473400-03
Chr10	irgsp1_rep	CDS	17588968	17589021	.	-	0	Parent=Os10t0473400-03
Chr10	irgsp1_rep	CDS	17588630	17588685	.	-	0	Parent=Os10t0473400-03
Chr10	irgsp1_rep	CDS	17588508	17588546	.	-	1	Parent=Os10t0473400-03
Chr10	irgsp1_rep	CDS	17588276	17588417	.	-	1	Parent=Os10t0473400-03
Chr10	irgsp1_rep	CDS	17587988	17588172	.	-	0	Parent=Os10t0473400-03
Chr10	irgsp1_rep	CDS	17587364	17587431	.	-	1	Parent=Os10t0473400-03
Chr10	irgsp1_rep	CDS	17587074	17587146	.	-	2	Parent=Os10t0473400-03
Chr10	irgsp1_rep	CDS	17586873	17586934	.	-	1	Parent=Os10t0473400-03
Chr10	irgsp1_rep	CDS	17585435	17586716	.	-	2	Parent=Os10t0473400-03
Chr10	irgsp1_rep	CDS	17584939	17585197	.	-	1	Parent=Os10t0473400-03
Chr10	irgsp1_rep	three_prime_UTR	17584681	17584938	.	-	.	Parent=Os10t0473400-03
Chr10	irgsp1_rep	mRNA	17584940	17592132	.	+	.	ID=Os10t0473600-00;Name=Os10t0473600-00;Locus_id=Os10g0473600;Note=Hypothetical protein.;Transcript_evidence=tplb0036f09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0473600-00
Chr10	irgsp1_rep	five_prime_UTR	17584940	17585180	.	+	.	Parent=Os10t0473600-00
Chr10	irgsp1_rep	five_prime_UTR	17585418	17586496	.	+	.	Parent=Os10t0473600-00
Chr10	irgsp1_rep	five_prime_UTR	17586834	17586920	.	+	.	Parent=Os10t0473600-00
Chr10	irgsp1_rep	five_prime_UTR	17587060	17587184	.	+	.	Parent=Os10t0473600-00
Chr10	irgsp1_rep	five_prime_UTR	17587958	17588183	.	+	.	Parent=Os10t0473600-00
Chr10	irgsp1_rep	five_prime_UTR	17588602	17588689	.	+	.	Parent=Os10t0473600-00
Chr10	irgsp1_rep	five_prime_UTR	17589923	17590048	.	+	.	Parent=Os10t0473600-00
Chr10	irgsp1_rep	CDS	17590049	17590064	.	+	0	Parent=Os10t0473600-00
Chr10	irgsp1_rep	CDS	17590674	17590756	.	+	2	Parent=Os10t0473600-00
Chr10	irgsp1_rep	CDS	17591427	17591524	.	+	0	Parent=Os10t0473600-00
Chr10	irgsp1_rep	CDS	17591632	17591761	.	+	1	Parent=Os10t0473600-00
Chr10	irgsp1_rep	three_prime_UTR	17591762	17591768	.	+	.	Parent=Os10t0473600-00
Chr10	irgsp1_rep	three_prime_UTR	17592003	17592132	.	+	.	Parent=Os10t0473600-00
Chr10	irgsp1_rep	mRNA	17600624	17601905	.	+	.	ID=Os10t0473800-01;Name=Os10t0473800-01;Locus_id=Os10g0473800;Note=Similar to protoporphyrinogen IX oxidase (plastidic)1.;Transcript_evidence=AK242086 (DDBJ%2C Best hit);ORF_evidence=NP_001105564.1 (RefSeq);NIAS_FLcDNA=J075140J23;TENOR=Os10t0473800-01;KEGG=Os10t0473800-01 (EC:1.3.3.4)
Chr10	irgsp1_rep	five_prime_UTR	17600624	17600957	.	+	.	Parent=Os10t0473800-01
Chr10	irgsp1_rep	CDS	17600958	17601686	.	+	0	Parent=Os10t0473800-01
Chr10	irgsp1_rep	three_prime_UTR	17601687	17601905	.	+	.	Parent=Os10t0473800-01
Chr10	irgsp1_rep	mRNA	17601191	17601517	.	-	.	ID=Os10t0473875-00;Name=Os10t0473875-00;Locus_id=Os10g0473875;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os10t0473875-00
Chr10	irgsp1_rep	CDS	17601191	17601517	.	-	0	Parent=Os10t0473875-00
Chr10	irgsp1_rep	mRNA	17611827	17612997	.	+	.	ID=Os10t0473950-00;Name=Os10t0473950-00;Locus_id=Os10g0473950;Note=Hypothetical conserved gene.;Transcript_evidence=EU947157 (DDBJ);ORF_evidence=Q7XDG5 (UniProt);TENOR=Os10t0473950-00;KEGG=Os10t0473950-00
Chr10	irgsp1_rep	five_prime_UTR	17611827	17611835	.	+	.	Parent=Os10t0473950-00
Chr10	irgsp1_rep	CDS	17611836	17611939	.	+	0	Parent=Os10t0473950-00
Chr10	irgsp1_rep	CDS	17612029	17612152	.	+	1	Parent=Os10t0473950-00
Chr10	irgsp1_rep	CDS	17612231	17612459	.	+	0	Parent=Os10t0473950-00
Chr10	irgsp1_rep	CDS	17612575	17612645	.	+	2	Parent=Os10t0473950-00
Chr10	irgsp1_rep	three_prime_UTR	17612646	17612744	.	+	.	Parent=Os10t0473950-00
Chr10	irgsp1_rep	three_prime_UTR	17612822	17612997	.	+	.	Parent=Os10t0473950-00
Chr10	irgsp1_rep	mRNA	17616226	17617209	.	-	.	ID=Os10t0474000-00;Name=Os10t0474000-00;Locus_id=Os10g0474000;Note=Peptidase C48%2C SUMO/Sentrin/Ubl1 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001064835.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase C48%2C SUMO/Sentrin/Ubl1 (IPR003653);TENOR=Os10t0474000-00
Chr10	irgsp1_rep	CDS	17616226	17617209	.	-	0	Parent=Os10t0474000-00
Chr10	irgsp1_rep	mRNA	17619188	17621032	.	-	.	ID=Os10t0474100-00;Name=Os10t0474100-00;Locus_id=Os10g0474100;Note=Similar to GMC oxidoreductase family protein%2C expressed.;Transcript_evidence=EU957761 (DDBJ);ORF_evidence=Q7XDG3 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: long-chain-alcohol oxidase activity (GO:0046577),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Glucose-methanol-choline oxidoreductase%2C N-terminal (IPR000172),Glucose-methanol-choline oxidoreductase%2C C-terminal (IPR007867),Alcohol dehydrogenase%2C long-chain fatty (IPR012400);TENOR=Os10t0474100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	17621027	17621032	.	-	.	Parent=Os10t0474100-00
Chr10	irgsp1_rep	CDS	17619188	17621026	.	-	0	Parent=Os10t0474100-00
Chr10	irgsp1_rep	mRNA	17646133	17649221	.	+	.	ID=Os10t0474250-00;Name=Os10t0474250-00;Locus_id=Os10g0474250;Note=Hypothetical protein.;Transcript_evidence=tplb0049e15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0474250-00
Chr10	irgsp1_rep	five_prime_UTR	17646133	17646136	.	+	.	Parent=Os10t0474250-00
Chr10	irgsp1_rep	CDS	17646137	17646259	.	+	0	Parent=Os10t0474250-00
Chr10	irgsp1_rep	CDS	17646451	17646606	.	+	0	Parent=Os10t0474250-00
Chr10	irgsp1_rep	three_prime_UTR	17646607	17646627	.	+	.	Parent=Os10t0474250-00
Chr10	irgsp1_rep	three_prime_UTR	17646776	17647074	.	+	.	Parent=Os10t0474250-00
Chr10	irgsp1_rep	three_prime_UTR	17647139	17647262	.	+	.	Parent=Os10t0474250-00
Chr10	irgsp1_rep	three_prime_UTR	17647344	17647524	.	+	.	Parent=Os10t0474250-00
Chr10	irgsp1_rep	three_prime_UTR	17647611	17647784	.	+	.	Parent=Os10t0474250-00
Chr10	irgsp1_rep	three_prime_UTR	17647842	17648263	.	+	.	Parent=Os10t0474250-00
Chr10	irgsp1_rep	three_prime_UTR	17648322	17648547	.	+	.	Parent=Os10t0474250-00
Chr10	irgsp1_rep	three_prime_UTR	17648687	17648922	.	+	.	Parent=Os10t0474250-00
Chr10	irgsp1_rep	three_prime_UTR	17649062	17649221	.	+	.	Parent=Os10t0474250-00
Chr10	irgsp1_rep	mRNA	17646481	17649530	.	-	.	ID=Os10t0474300-00;Name=Os10t0474300-00;Locus_id=Os10g0474300;Note=Conserved hypothetical protein.;Transcript_evidence=AK334456 (DDBJ);ORF_evidence=Q8W5P0 (UniProt);TENOR=Os10t0474300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	17649305	17649530	.	-	0	Parent=Os10t0474300-00
Chr10	irgsp1_rep	CDS	17649084	17649220	.	-	2	Parent=Os10t0474300-00
Chr10	irgsp1_rep	CDS	17648681	17648954	.	-	0	Parent=Os10t0474300-00
Chr10	irgsp1_rep	CDS	17648520	17648554	.	-	2	Parent=Os10t0474300-00
Chr10	irgsp1_rep	three_prime_UTR	17648406	17648519	.	-	.	Parent=Os10t0474300-00
Chr10	irgsp1_rep	three_prime_UTR	17647779	17647843	.	-	.	Parent=Os10t0474300-00
Chr10	irgsp1_rep	three_prime_UTR	17647604	17647672	.	-	.	Parent=Os10t0474300-00
Chr10	irgsp1_rep	three_prime_UTR	17647348	17647521	.	-	.	Parent=Os10t0474300-00
Chr10	irgsp1_rep	three_prime_UTR	17647133	17647266	.	-	.	Parent=Os10t0474300-00
Chr10	irgsp1_rep	three_prime_UTR	17646777	17647061	.	-	.	Parent=Os10t0474300-00
Chr10	irgsp1_rep	three_prime_UTR	17646481	17646628	.	-	.	Parent=Os10t0474300-00
Chr10	irgsp1_rep	mRNA	17656709	17660770	.	+	.	ID=Os10t0474600-00;Name=Os10t0474600-00;Locus_id=Os10g0474600;Note=Conserved hypothetical protein.;Transcript_evidence=AK334456 (DDBJ);ORF_evidence=Q8W5P0 (UniProt);TENOR=Os10t0474600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	17656709	17656934	.	+	0	Parent=Os10t0474600-00
Chr10	irgsp1_rep	CDS	17657016	17657152	.	+	2	Parent=Os10t0474600-00
Chr10	irgsp1_rep	CDS	17657284	17657479	.	+	0	Parent=Os10t0474600-00
Chr10	irgsp1_rep	CDS	17658808	17658839	.	+	2	Parent=Os10t0474600-00
Chr10	irgsp1_rep	three_prime_UTR	17658840	17659028	.	+	.	Parent=Os10t0474600-00
Chr10	irgsp1_rep	three_prime_UTR	17659441	17659505	.	+	.	Parent=Os10t0474600-00
Chr10	irgsp1_rep	three_prime_UTR	17659598	17659666	.	+	.	Parent=Os10t0474600-00
Chr10	irgsp1_rep	three_prime_UTR	17659746	17659903	.	+	.	Parent=Os10t0474600-00
Chr10	irgsp1_rep	three_prime_UTR	17659979	17660109	.	+	.	Parent=Os10t0474600-00
Chr10	irgsp1_rep	three_prime_UTR	17660183	17660470	.	+	.	Parent=Os10t0474600-00
Chr10	irgsp1_rep	three_prime_UTR	17660634	17660770	.	+	.	Parent=Os10t0474600-00
Chr10	irgsp1_rep	mRNA	17656981	17661181	.	-	.	ID=Os10t0474700-00;Name=Os10t0474700-00;Locus_id=Os10g0474700;Note=Non-protein coding transcript.;Transcript_evidence=tplb0049e15 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os10t0474700-00
Chr10	irgsp1_rep	exon	17660992	17661181	.	-	.	Parent=Os10t0474700-00
Chr10	irgsp1_rep	exon	17660629	17660805	.	-	.	Parent=Os10t0474700-00
Chr10	irgsp1_rep	exon	17660170	17660465	.	-	.	Parent=Os10t0474700-00
Chr10	irgsp1_rep	exon	17659983	17660103	.	-	.	Parent=Os10t0474700-00
Chr10	irgsp1_rep	exon	17659743	17659907	.	-	.	Parent=Os10t0474700-00
Chr10	irgsp1_rep	exon	17658916	17659677	.	-	.	Parent=Os10t0474700-00
Chr10	irgsp1_rep	exon	17656981	17657557	.	-	.	Parent=Os10t0474700-00
Chr10	irgsp1_rep	mRNA	17673233	17674321	.	-	.	ID=Os10t0474800-00;Name=Os10t0474800-00;Locus_id=Os10g0474800;Note=Similar to predicted protein.;Transcript_evidence=CT835781 (DDBJ%2C Best hit);ORF_evidence=Q7XDF7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Glucose-methanol-choline oxidoreductase%2C N-terminal (IPR000172),Glucose-methanol-choline oxidoreductase%2C C-terminal (IPR007867);TENOR=Os10t0474800-00;KEGG=Os10t0474800-00
Chr10	irgsp1_rep	five_prime_UTR	17674321	17674321	.	-	.	Parent=Os10t0474800-00
Chr10	irgsp1_rep	CDS	17673379	17674320	.	-	0	Parent=Os10t0474800-00
Chr10	irgsp1_rep	three_prime_UTR	17673233	17673378	.	-	.	Parent=Os10t0474800-00
Chr10	irgsp1_rep	mRNA	17622278	17623669	.	-	.	ID=Os10t0474900-00;Name=Os10t0474900-00;Locus_id=Os10g0474900;Oryzabase Gene Name Synonym(s)=GMC oxidoreductase;Note=Similar to GMC oxidoreductase family protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XDG3 (UniProt);Oryzabase=19291;TENOR=Os10t0474900-00
Chr10	irgsp1_rep	CDS	17623397	17623669	.	-	0	Parent=Os10t0474900-00
Chr10	irgsp1_rep	CDS	17622278	17622526	.	-	0	Parent=Os10t0474900-00
Chr10	irgsp1_rep	mRNA	17684668	17688595	.	-	.	ID=Os10t0475000-01;Name=Os10t0475000-01;Locus_id=Os10g0475000;Note=Conserved hypothetical protein.;Transcript_evidence=AK242602 (DDBJ%2C Best hit);ORF_evidence=NP_001176206.1 (RefSeq);NIAS_FLcDNA=J090014K11;TENOR=Os10t0475000-01;KEGG=Os10t0475000-01
Chr10	irgsp1_rep	five_prime_UTR	17686710	17688595	.	-	.	Parent=Os10t0475000-01
Chr10	irgsp1_rep	CDS	17686008	17686709	.	-	0	Parent=Os10t0475000-01
Chr10	irgsp1_rep	three_prime_UTR	17684668	17686007	.	-	.	Parent=Os10t0475000-01
Chr10	irgsp1_rep	mRNA	17682792	17689465	.	-	.	ID=Os10t0475100-00;Name=Os10t0475100-00;Locus_id=Os10g0475100;Note=Similar to oxidoreductase.;Transcript_evidence=BT061200 (DDBJ);ORF_evidence=Q337K8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: long-chain-alcohol oxidase activity (GO:0046577),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Glucose-methanol-choline oxidoreductase%2C N-terminal (IPR000172),Glucose-methanol-choline oxidoreductase%2C C-terminal (IPR007867),Alcohol dehydrogenase%2C long-chain fatty (IPR012400);TENOR=Os10t0475100-00;KEGG=Os10t0475100-00
Chr10	irgsp1_rep	CDS	17688596	17689465	.	-	0	Parent=Os10t0475100-00
Chr10	irgsp1_rep	CDS	17682794	17684560	.	-	0	Parent=Os10t0475100-00
Chr10	irgsp1_rep	three_prime_UTR	17682792	17682793	.	-	.	Parent=Os10t0475100-00
Chr10	irgsp1_rep	mRNA	17716122	17716652	.	+	.	ID=Os10t0475400-00;Name=Os10t0475400-00;Locus_id=Os10g0475400;Note=Nucleoside phosphatase GDA1/CD39 domain containing protein.;Transcript_evidence=EU946507 (DDBJ);ORF_evidence=Q8W5Q4 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Nucleoside phosphatase GDA1/CD39 (IPR000407);TENOR=Os10t0475400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	17716122	17716139	.	+	.	Parent=Os10t0475400-00
Chr10	irgsp1_rep	CDS	17716140	17716652	.	+	0	Parent=Os10t0475400-00
Chr10	irgsp1_rep	mRNA	17722467	17724969	.	+	.	ID=Os10t0475900-01;Name=Os10t0475900-01;Locus_id=Os10g0475900;Note=Ubiquitin domain containing protein.;Transcript_evidence=AK101853 (DDBJ%2C Best hit);ORF_evidence=Q8W5Q6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin (IPR000626),Ubiquitin supergroup (IPR019955),Ubiquitin subgroup (IPR019956);NIAS_FLcDNA=J033069L14;Expression=AK101853;TENOR=Os10t0475900-01;KEGG=Os10t0475900-01
Chr10	irgsp1_rep	five_prime_UTR	17722467	17722603	.	+	.	Parent=Os10t0475900-01
Chr10	irgsp1_rep	CDS	17722604	17722666	.	+	0	Parent=Os10t0475900-01
Chr10	irgsp1_rep	CDS	17723815	17724738	.	+	0	Parent=Os10t0475900-01
Chr10	irgsp1_rep	three_prime_UTR	17724739	17724969	.	+	.	Parent=Os10t0475900-01
Chr10	irgsp1_rep	mRNA	17726512	17729548	.	+	.	ID=Os10t0476000-01;Name=Os10t0476000-01;Locus_id=Os10g0476000;CGSNL Gene Symbol=ABCI16;CGSNL Gene Name=ABC TRANSPORTER I FAMILY MEMBER 16;Oryzabase Gene Symbol Synonym(s)=OsABCI16%2C OsABCI16_1%2C OsABCI16_2;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCI subgroup member 16;Note=Adaptin ear-binding coat-associated protein 1 NECAP-1 family protein.;Transcript_evidence=AK065629 (DDBJ%2C Best hit);ORF_evidence=B4FAZ6 (UniProt);GO=Biological Process: endocytosis (GO:0006897),Cellular Component: membrane (GO:0016020);InterPro=Adaptin ear-binding coat-associated protein 1 NECAP-1 (IPR012466);NIAS_FLcDNA=J013028C23;Oryzabase=12039;Expression=AK065629;TENOR=Os10t0476000-01;KEGG=Os10t0476000-01
Chr10	irgsp1_rep	five_prime_UTR	17726512	17726752	.	+	.	Parent=Os10t0476000-01
Chr10	irgsp1_rep	CDS	17726753	17727265	.	+	0	Parent=Os10t0476000-01
Chr10	irgsp1_rep	CDS	17728307	17728588	.	+	0	Parent=Os10t0476000-01
Chr10	irgsp1_rep	CDS	17729036	17729104	.	+	0	Parent=Os10t0476000-01
Chr10	irgsp1_rep	three_prime_UTR	17729105	17729548	.	+	.	Parent=Os10t0476000-01
Chr10	irgsp1_rep	mRNA	17726960	17729492	.	+	.	ID=Os10t0476000-02;Name=Os10t0476000-02;Locus_id=Os10g0476000;CGSNL Gene Symbol=ABCI16;CGSNL Gene Name=ABC TRANSPORTER I FAMILY MEMBER 16;Oryzabase Gene Symbol Synonym(s)=OsABCI16%2C OsABCI16_1%2C OsABCI16_2;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCI subgroup member 16;Note=Similar to Adaptin ear-binding coat-associated protein 2.;Transcript_evidence=AK100161 (DDBJ%2C Best hit);ORF_evidence=B4FAZ6 (UniProt);GO=Biological Process: endocytosis (GO:0006897),Cellular Component: membrane (GO:0016020);InterPro=Adaptin ear-binding coat-associated protein 1 NECAP-1 (IPR012466);NIAS_FLcDNA=J023020P10;Oryzabase=12039;Expression=AK100161;TENOR=Os10t0476000-02;KEGG=Os10t0476000-02
Chr10	irgsp1_rep	CDS	17726960	17727265	.	+	0	Parent=Os10t0476000-02
Chr10	irgsp1_rep	CDS	17728307	17728588	.	+	0	Parent=Os10t0476000-02
Chr10	irgsp1_rep	CDS	17729036	17729104	.	+	0	Parent=Os10t0476000-02
Chr10	irgsp1_rep	three_prime_UTR	17729105	17729492	.	+	.	Parent=Os10t0476000-02
Chr10	irgsp1_rep	mRNA	17732596	17735799	.	+	.	ID=Os10t0476100-00;Name=Os10t0476100-00;Locus_id=Os10g0476100;Note=Similar to Protein kinase MK6.;Transcript_evidence=AK375579 (DDBJ);ORF_evidence=Q9LW99 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),AGC-kinase%2C C-terminal (IPR000961),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Protein kinase%2C C-terminal (IPR017892),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os10t0476100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	17732596	17732798	.	+	0	Parent=Os10t0476100-00
Chr10	irgsp1_rep	CDS	17733099	17733273	.	+	1	Parent=Os10t0476100-00
Chr10	irgsp1_rep	CDS	17733356	17733439	.	+	0	Parent=Os10t0476100-00
Chr10	irgsp1_rep	CDS	17733526	17733767	.	+	0	Parent=Os10t0476100-00
Chr10	irgsp1_rep	CDS	17733848	17734073	.	+	1	Parent=Os10t0476100-00
Chr10	irgsp1_rep	CDS	17734211	17734290	.	+	0	Parent=Os10t0476100-00
Chr10	irgsp1_rep	CDS	17734373	17734457	.	+	1	Parent=Os10t0476100-00
Chr10	irgsp1_rep	CDS	17734630	17734761	.	+	0	Parent=Os10t0476100-00
Chr10	irgsp1_rep	CDS	17734892	17735005	.	+	0	Parent=Os10t0476100-00
Chr10	irgsp1_rep	CDS	17735088	17735135	.	+	0	Parent=Os10t0476100-00
Chr10	irgsp1_rep	CDS	17735378	17735462	.	+	0	Parent=Os10t0476100-00
Chr10	irgsp1_rep	CDS	17735687	17735799	.	+	2	Parent=Os10t0476100-00
Chr10	irgsp1_rep	mRNA	17735290	17744164	.	-	.	ID=Os10t0476200-01;Name=Os10t0476200-01;Locus_id=Os10g0476200;Note=Similar to Casein kinase I (Fragment).;Transcript_evidence=AK107522 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-129-F10;Expression=AK107522;TENOR=Os10t0476200-01;KEGG=Os10t0476200-01
Chr10	irgsp1_rep	five_prime_UTR	17743751	17744164	.	-	.	Parent=Os10t0476200-01
Chr10	irgsp1_rep	five_prime_UTR	17743234	17743328	.	-	.	Parent=Os10t0476200-01
Chr10	irgsp1_rep	five_prime_UTR	17742503	17742652	.	-	.	Parent=Os10t0476200-01
Chr10	irgsp1_rep	five_prime_UTR	17735964	17736053	.	-	.	Parent=Os10t0476200-01
Chr10	irgsp1_rep	CDS	17735679	17735963	.	-	0	Parent=Os10t0476200-01
Chr10	irgsp1_rep	three_prime_UTR	17735290	17735678	.	-	.	Parent=Os10t0476200-01
Chr10	irgsp1_rep	mRNA	17737779	17744140	.	-	.	ID=Os10t0476200-02;Name=Os10t0476200-02;Locus_id=Os10g0476200;Note=Hypothetical gene.;Transcript_evidence=AK066729 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013077G21;Expression=AK066729;TENOR=Os10t0476200-02;KEGG=Os10t0476200-02
Chr10	irgsp1_rep	five_prime_UTR	17743751	17744140	.	-	.	Parent=Os10t0476200-02
Chr10	irgsp1_rep	five_prime_UTR	17743234	17743328	.	-	.	Parent=Os10t0476200-02
Chr10	irgsp1_rep	five_prime_UTR	17742572	17742652	.	-	.	Parent=Os10t0476200-02
Chr10	irgsp1_rep	CDS	17742503	17742571	.	-	0	Parent=Os10t0476200-02
Chr10	irgsp1_rep	CDS	17737950	17738153	.	-	0	Parent=Os10t0476200-02
Chr10	irgsp1_rep	three_prime_UTR	17737779	17737949	.	-	.	Parent=Os10t0476200-02
Chr10	irgsp1_rep	mRNA	17739171	17740794	.	+	.	ID=Os10t0476300-01;Name=Os10t0476300-01;Locus_id=Os10g0476300;Note=Similar to casein kinase I isoform delta-like.;Transcript_evidence=AK070314 (DDBJ%2C Best hit);ORF_evidence=NP_001151631.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J023051B05;TENOR=Os10t0476300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	17739171	17739456	.	+	.	Parent=Os10t0476300-01
Chr10	irgsp1_rep	five_prime_UTR	17739532	17739817	.	+	.	Parent=Os10t0476300-01
Chr10	irgsp1_rep	five_prime_UTR	17739914	17740091	.	+	.	Parent=Os10t0476300-01
Chr10	irgsp1_rep	CDS	17740092	17740209	.	+	0	Parent=Os10t0476300-01
Chr10	irgsp1_rep	CDS	17740303	17740481	.	+	2	Parent=Os10t0476300-01
Chr10	irgsp1_rep	three_prime_UTR	17740482	17740794	.	+	.	Parent=Os10t0476300-01
Chr10	irgsp1_rep	mRNA	17739220	17744206	.	+	.	ID=Os10t0476300-02;Name=Os10t0476300-02;Locus_id=Os10g0476300;Note=Similar to Dual specificity kinase 1.;Transcript_evidence=AK120765 (DDBJ%2C Best hit);ORF_evidence=NP_193170.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023007I07;Expression=AK120765;TENOR=Os10t0476300-02;KEGG=Os10t0476300-02 (EC:2.7.11.1)
Chr10	irgsp1_rep	five_prime_UTR	17739220	17739456	.	+	.	Parent=Os10t0476300-02
Chr10	irgsp1_rep	five_prime_UTR	17739532	17739741	.	+	.	Parent=Os10t0476300-02
Chr10	irgsp1_rep	CDS	17739742	17739817	.	+	0	Parent=Os10t0476300-02
Chr10	irgsp1_rep	CDS	17739914	17739954	.	+	2	Parent=Os10t0476300-02
Chr10	irgsp1_rep	CDS	17740140	17740209	.	+	0	Parent=Os10t0476300-02
Chr10	irgsp1_rep	CDS	17740303	17740451	.	+	2	Parent=Os10t0476300-02
Chr10	irgsp1_rep	CDS	17740905	17741000	.	+	0	Parent=Os10t0476300-02
Chr10	irgsp1_rep	CDS	17741446	17741516	.	+	0	Parent=Os10t0476300-02
Chr10	irgsp1_rep	CDS	17742042	17742103	.	+	1	Parent=Os10t0476300-02
Chr10	irgsp1_rep	CDS	17742276	17742339	.	+	2	Parent=Os10t0476300-02
Chr10	irgsp1_rep	CDS	17742428	17742512	.	+	1	Parent=Os10t0476300-02
Chr10	irgsp1_rep	CDS	17742596	17742722	.	+	0	Parent=Os10t0476300-02
Chr10	irgsp1_rep	CDS	17742833	17742909	.	+	2	Parent=Os10t0476300-02
Chr10	irgsp1_rep	CDS	17743059	17743119	.	+	0	Parent=Os10t0476300-02
Chr10	irgsp1_rep	CDS	17743206	17743339	.	+	2	Parent=Os10t0476300-02
Chr10	irgsp1_rep	CDS	17743773	17744087	.	+	0	Parent=Os10t0476300-02
Chr10	irgsp1_rep	three_prime_UTR	17744088	17744206	.	+	.	Parent=Os10t0476300-02
Chr10	irgsp1_rep	mRNA	17746812	17750061	.	-	.	ID=Os10t0476400-01;Name=Os10t0476400-01;Locus_id=Os10g0476400;Note=Snf7 family protein.;Transcript_evidence=AK072826 (DDBJ%2C Best hit);ORF_evidence=B6T5E0 (UniProt);GO=Biological Process: protein transport (GO:0015031);InterPro=Snf7 (IPR005024);NIAS_FLcDNA=J023136L17;Expression=AK072826;TENOR=Os10t0476400-01;KEGG=Os10t0476400-01
Chr10	irgsp1_rep	five_prime_UTR	17749939	17750061	.	-	.	Parent=Os10t0476400-01
Chr10	irgsp1_rep	CDS	17749905	17749938	.	-	0	Parent=Os10t0476400-01
Chr10	irgsp1_rep	CDS	17749657	17749701	.	-	2	Parent=Os10t0476400-01
Chr10	irgsp1_rep	CDS	17749040	17749074	.	-	2	Parent=Os10t0476400-01
Chr10	irgsp1_rep	CDS	17748719	17748769	.	-	0	Parent=Os10t0476400-01
Chr10	irgsp1_rep	CDS	17748520	17748624	.	-	0	Parent=Os10t0476400-01
Chr10	irgsp1_rep	CDS	17748359	17748430	.	-	0	Parent=Os10t0476400-01
Chr10	irgsp1_rep	CDS	17748025	17748096	.	-	0	Parent=Os10t0476400-01
Chr10	irgsp1_rep	CDS	17747826	17747906	.	-	0	Parent=Os10t0476400-01
Chr10	irgsp1_rep	CDS	17747657	17747692	.	-	0	Parent=Os10t0476400-01
Chr10	irgsp1_rep	CDS	17747511	17747566	.	-	0	Parent=Os10t0476400-01
Chr10	irgsp1_rep	CDS	17746975	17747026	.	-	1	Parent=Os10t0476400-01
Chr10	irgsp1_rep	three_prime_UTR	17746812	17746974	.	-	.	Parent=Os10t0476400-01
Chr10	irgsp1_rep	mRNA	17746797	17750016	.	-	.	ID=Os10t0476400-02;Name=Os10t0476400-02;Locus_id=Os10g0476400;Note=Snf7 family protein.;Transcript_evidence=AK104071 (DDBJ%2C Best hit);ORF_evidence=B6T5E0 (UniProt);GO=Biological Process: protein transport (GO:0015031);InterPro=Snf7 (IPR005024);NIAS_FLcDNA=001-027-B06;TENOR=Os10t0476400-02
Chr10	irgsp1_rep	five_prime_UTR	17749939	17750016	.	-	.	Parent=Os10t0476400-02
Chr10	irgsp1_rep	CDS	17749905	17749938	.	-	0	Parent=Os10t0476400-02
Chr10	irgsp1_rep	CDS	17749657	17749701	.	-	2	Parent=Os10t0476400-02
Chr10	irgsp1_rep	CDS	17749040	17749074	.	-	2	Parent=Os10t0476400-02
Chr10	irgsp1_rep	CDS	17748719	17748769	.	-	0	Parent=Os10t0476400-02
Chr10	irgsp1_rep	CDS	17748520	17748624	.	-	0	Parent=Os10t0476400-02
Chr10	irgsp1_rep	CDS	17748359	17748430	.	-	0	Parent=Os10t0476400-02
Chr10	irgsp1_rep	CDS	17748025	17748096	.	-	0	Parent=Os10t0476400-02
Chr10	irgsp1_rep	CDS	17747826	17747906	.	-	0	Parent=Os10t0476400-02
Chr10	irgsp1_rep	CDS	17747657	17747692	.	-	0	Parent=Os10t0476400-02
Chr10	irgsp1_rep	CDS	17747511	17747566	.	-	0	Parent=Os10t0476400-02
Chr10	irgsp1_rep	CDS	17746975	17747026	.	-	1	Parent=Os10t0476400-02
Chr10	irgsp1_rep	three_prime_UTR	17746797	17746974	.	-	.	Parent=Os10t0476400-02
Chr10	irgsp1_rep	mRNA	17751639	17753316	.	-	.	ID=Os10t0476500-01;Name=Os10t0476500-01;Locus_id=Os10g0476500;Note=Conserved hypothetical protein.;Transcript_evidence=AK110990 (DDBJ%2C Best hit);ORF_evidence=B9G687 (UniProt);NIAS_FLcDNA=002-174-D09;Expression=AK110990;TENOR=Os10t0476500-01;KEGG=Os10t0476500-01
Chr10	irgsp1_rep	five_prime_UTR	17753249	17753316	.	-	.	Parent=Os10t0476500-01
Chr10	irgsp1_rep	CDS	17752211	17753248	.	-	0	Parent=Os10t0476500-01
Chr10	irgsp1_rep	CDS	17751956	17752117	.	-	0	Parent=Os10t0476500-01
Chr10	irgsp1_rep	three_prime_UTR	17751639	17751955	.	-	.	Parent=Os10t0476500-01
Chr10	irgsp1_rep	mRNA	17755806	17763645	.	+	.	ID=Os10t0476600-01;Name=Os10t0476600-01;Locus_id=Os10g0476600;CGSNL Gene Symbol=PP2A-B'';CGSNL Gene Name=PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B'';Oryzabase Gene Symbol Synonym(s)=OsPP2A-B'';Oryzabase Gene Name Synonym(s)=protein phosphatase 2A B'' subunit%2C B'' regulatory subunit of protein phosphatase 2A;Note=Similar to Protein phosphatase 2A 62 kDa B'' regulatory subunit (Protein phosphatase 2A 62 kDa B regulatory subunit) (Protein phosphatase 2A alpha).;Transcript_evidence=AK067811 (DDBJ%2C Best hit);ORF_evidence=XP_002872330.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J013116N14;Oryzabase=18670;Expression=AK067811;TENOR=Os10t0476600-01;KEGG=Os10t0476600-01
Chr10	irgsp1_rep	five_prime_UTR	17755806	17756120	.	+	.	Parent=Os10t0476600-01
Chr10	irgsp1_rep	CDS	17756121	17756273	.	+	0	Parent=Os10t0476600-01
Chr10	irgsp1_rep	CDS	17758710	17758958	.	+	0	Parent=Os10t0476600-01
Chr10	irgsp1_rep	CDS	17759069	17759171	.	+	0	Parent=Os10t0476600-01
Chr10	irgsp1_rep	CDS	17759256	17759355	.	+	2	Parent=Os10t0476600-01
Chr10	irgsp1_rep	CDS	17760267	17760372	.	+	1	Parent=Os10t0476600-01
Chr10	irgsp1_rep	CDS	17760515	17760605	.	+	0	Parent=Os10t0476600-01
Chr10	irgsp1_rep	CDS	17760916	17761057	.	+	2	Parent=Os10t0476600-01
Chr10	irgsp1_rep	CDS	17761335	17761482	.	+	1	Parent=Os10t0476600-01
Chr10	irgsp1_rep	CDS	17761562	17761671	.	+	0	Parent=Os10t0476600-01
Chr10	irgsp1_rep	CDS	17762096	17762252	.	+	1	Parent=Os10t0476600-01
Chr10	irgsp1_rep	CDS	17762404	17762529	.	+	0	Parent=Os10t0476600-01
Chr10	irgsp1_rep	CDS	17762611	17762751	.	+	0	Parent=Os10t0476600-01
Chr10	irgsp1_rep	three_prime_UTR	17762752	17762756	.	+	.	Parent=Os10t0476600-01
Chr10	irgsp1_rep	three_prime_UTR	17762999	17763645	.	+	.	Parent=Os10t0476600-01
Chr10	irgsp1_rep	mRNA	17755829	17763648	.	+	.	ID=Os10t0476600-02;Name=Os10t0476600-02;Locus_id=Os10g0476600;CGSNL Gene Symbol=PP2A-B'';CGSNL Gene Name=PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B'';Oryzabase Gene Symbol Synonym(s)=OsPP2A-B'';Oryzabase Gene Name Synonym(s)=protein phosphatase 2A B'' subunit%2C B'' regulatory subunit of protein phosphatase 2A;Note=Similar to Protein phosphatase 2A 62 kDa B'' regulatory subunit (Protein phosphatase 2A 62 kDa B regulatory subunit) (Protein phosphatase 2A alpha).;Transcript_evidence=AK101394 (DDBJ%2C Best hit);ORF_evidence=NP_175847.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J033037A09;Oryzabase=18670;Expression=AK101394;TENOR=Os10t0476600-02;KEGG=Os10t0476600-02
Chr10	irgsp1_rep	five_prime_UTR	17755829	17756120	.	+	.	Parent=Os10t0476600-02
Chr10	irgsp1_rep	CDS	17756121	17756273	.	+	0	Parent=Os10t0476600-02
Chr10	irgsp1_rep	CDS	17758710	17758958	.	+	0	Parent=Os10t0476600-02
Chr10	irgsp1_rep	CDS	17759069	17759171	.	+	0	Parent=Os10t0476600-02
Chr10	irgsp1_rep	CDS	17759256	17759355	.	+	2	Parent=Os10t0476600-02
Chr10	irgsp1_rep	CDS	17760267	17760372	.	+	1	Parent=Os10t0476600-02
Chr10	irgsp1_rep	CDS	17760515	17760605	.	+	0	Parent=Os10t0476600-02
Chr10	irgsp1_rep	CDS	17760916	17761057	.	+	2	Parent=Os10t0476600-02
Chr10	irgsp1_rep	CDS	17761335	17761482	.	+	1	Parent=Os10t0476600-02
Chr10	irgsp1_rep	CDS	17761562	17761671	.	+	0	Parent=Os10t0476600-02
Chr10	irgsp1_rep	CDS	17762096	17762252	.	+	1	Parent=Os10t0476600-02
Chr10	irgsp1_rep	CDS	17762404	17762529	.	+	0	Parent=Os10t0476600-02
Chr10	irgsp1_rep	CDS	17762611	17762751	.	+	0	Parent=Os10t0476600-02
Chr10	irgsp1_rep	three_prime_UTR	17762752	17762756	.	+	.	Parent=Os10t0476600-02
Chr10	irgsp1_rep	three_prime_UTR	17762999	17763648	.	+	.	Parent=Os10t0476600-02
Chr10	irgsp1_rep	mRNA	17766864	17772027	.	+	.	ID=Os10t0476700-01;Name=Os10t0476700-01;Locus_id=Os10g0476700;CGSNL Gene Symbol=GELP109;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 109;Oryzabase Gene Symbol Synonym(s)=OsGELP109;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 109;Note=Esterase%2C SGNH hydrolase-type%2C subgroup domain containing protein.;Transcript_evidence=AK070445 (DDBJ%2C Best hit);ORF_evidence=B6TVA2 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087),Esterase%2C SGNH hydrolase-type (IPR013830),Esterase%2C SGNH hydrolase-type%2C subgroup (IPR013831);NIAS_FLcDNA=J023052C15;Oryzabase=11059;Expression=AK070445;TENOR=Os10t0476700-01;KEGG=Os10t0476700-01
Chr10	irgsp1_rep	five_prime_UTR	17766864	17766996	.	+	.	Parent=Os10t0476700-01
Chr10	irgsp1_rep	CDS	17766997	17767070	.	+	0	Parent=Os10t0476700-01
Chr10	irgsp1_rep	CDS	17767153	17767273	.	+	1	Parent=Os10t0476700-01
Chr10	irgsp1_rep	CDS	17767983	17768060	.	+	0	Parent=Os10t0476700-01
Chr10	irgsp1_rep	CDS	17768149	17768287	.	+	0	Parent=Os10t0476700-01
Chr10	irgsp1_rep	CDS	17769553	17769631	.	+	2	Parent=Os10t0476700-01
Chr10	irgsp1_rep	CDS	17769991	17770155	.	+	1	Parent=Os10t0476700-01
Chr10	irgsp1_rep	CDS	17771581	17771737	.	+	1	Parent=Os10t0476700-01
Chr10	irgsp1_rep	three_prime_UTR	17771738	17772027	.	+	.	Parent=Os10t0476700-01
Chr10	irgsp1_rep	mRNA	17766931	17772031	.	+	.	ID=Os10t0476700-02;Name=Os10t0476700-02;Locus_id=Os10g0476700;CGSNL Gene Symbol=GELP109;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 109;Oryzabase Gene Symbol Synonym(s)=OsGELP109;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 109;Note=Esterase%2C SGNH hydrolase-type%2C subgroup domain containing protein.;Transcript_evidence=AK121743 (DDBJ%2C Best hit);ORF_evidence=B6TVA2 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087),Esterase%2C SGNH hydrolase-type (IPR013830),Esterase%2C SGNH hydrolase-type%2C subgroup (IPR013831);NIAS_FLcDNA=J033086B04;Oryzabase=11059;Expression=AK121743;TENOR=Os10t0476700-02;KEGG=Os10t0476700-02
Chr10	irgsp1_rep	five_prime_UTR	17766931	17766996	.	+	.	Parent=Os10t0476700-02
Chr10	irgsp1_rep	CDS	17766997	17767070	.	+	0	Parent=Os10t0476700-02
Chr10	irgsp1_rep	CDS	17767153	17767273	.	+	1	Parent=Os10t0476700-02
Chr10	irgsp1_rep	CDS	17767983	17768060	.	+	0	Parent=Os10t0476700-02
Chr10	irgsp1_rep	CDS	17768149	17768287	.	+	0	Parent=Os10t0476700-02
Chr10	irgsp1_rep	CDS	17769553	17769631	.	+	2	Parent=Os10t0476700-02
Chr10	irgsp1_rep	CDS	17769991	17770155	.	+	1	Parent=Os10t0476700-02
Chr10	irgsp1_rep	CDS	17771581	17771737	.	+	1	Parent=Os10t0476700-02
Chr10	irgsp1_rep	three_prime_UTR	17771738	17772031	.	+	.	Parent=Os10t0476700-02
Chr10	irgsp1_rep	mRNA	17766975	17771917	.	+	.	ID=Os10t0476700-03;Name=Os10t0476700-03;Locus_id=Os10g0476700;CGSNL Gene Symbol=GELP109;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 109;Oryzabase Gene Symbol Synonym(s)=OsGELP109;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 109;Note=Esterase%2C SGNH hydrolase-type%2C subgroup domain containing protein.;Transcript_evidence=AK060164 (DDBJ%2C Best hit);ORF_evidence=B6TVA2 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087),Esterase%2C SGNH hydrolase-type (IPR013830),Esterase%2C SGNH hydrolase-type%2C subgroup (IPR013831);NIAS_FLcDNA=006-311-B04;Oryzabase=11059;Expression=AK060164;TENOR=Os10t0476700-03;KEGG=Os10t0476700-03
Chr10	irgsp1_rep	five_prime_UTR	17766975	17766996	.	+	.	Parent=Os10t0476700-03
Chr10	irgsp1_rep	CDS	17766997	17767070	.	+	0	Parent=Os10t0476700-03
Chr10	irgsp1_rep	CDS	17767153	17767273	.	+	1	Parent=Os10t0476700-03
Chr10	irgsp1_rep	CDS	17767983	17768060	.	+	0	Parent=Os10t0476700-03
Chr10	irgsp1_rep	CDS	17768149	17768287	.	+	0	Parent=Os10t0476700-03
Chr10	irgsp1_rep	CDS	17769553	17769631	.	+	2	Parent=Os10t0476700-03
Chr10	irgsp1_rep	CDS	17769991	17770155	.	+	1	Parent=Os10t0476700-03
Chr10	irgsp1_rep	CDS	17771581	17771737	.	+	1	Parent=Os10t0476700-03
Chr10	irgsp1_rep	three_prime_UTR	17771738	17771917	.	+	.	Parent=Os10t0476700-03
Chr10	irgsp1_rep	mRNA	17773251	17776920	.	-	.	ID=Os10t0476900-01;Name=Os10t0476900-01;Locus_id=Os10g0476900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK103437 (DDBJ%2C Best hit);ORF_evidence=A3C5Q4 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033129C05;TENOR=Os10t0476900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	17776771	17776920	.	-	.	Parent=Os10t0476900-01
Chr10	irgsp1_rep	CDS	17774767	17776770	.	-	0	Parent=Os10t0476900-01
Chr10	irgsp1_rep	three_prime_UTR	17774667	17774766	.	-	.	Parent=Os10t0476900-01
Chr10	irgsp1_rep	three_prime_UTR	17773251	17773739	.	-	.	Parent=Os10t0476900-01
Chr10	irgsp1_rep	mRNA	17778502	17793323	.	+	.	ID=Os10t0477000-01;Name=Os10t0477000-01;Locus_id=Os10g0477000;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK106419 (DDBJ%2C Best hit);ORF_evidence=Q9AV01 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-type fold (IPR016024);NIAS_FLcDNA=002-103-B01;Expression=AK106419;TENOR=Os10t0477000-01;KEGG=Os10t0477000-01
Chr10	irgsp1_rep	five_prime_UTR	17778502	17778656	.	+	.	Parent=Os10t0477000-01
Chr10	irgsp1_rep	CDS	17778657	17778743	.	+	0	Parent=Os10t0477000-01
Chr10	irgsp1_rep	CDS	17779757	17779844	.	+	0	Parent=Os10t0477000-01
Chr10	irgsp1_rep	CDS	17780645	17780753	.	+	2	Parent=Os10t0477000-01
Chr10	irgsp1_rep	CDS	17780838	17780936	.	+	1	Parent=Os10t0477000-01
Chr10	irgsp1_rep	CDS	17781551	17781593	.	+	1	Parent=Os10t0477000-01
Chr10	irgsp1_rep	CDS	17782215	17782286	.	+	0	Parent=Os10t0477000-01
Chr10	irgsp1_rep	CDS	17782365	17782460	.	+	0	Parent=Os10t0477000-01
Chr10	irgsp1_rep	CDS	17782574	17782807	.	+	0	Parent=Os10t0477000-01
Chr10	irgsp1_rep	CDS	17782879	17783062	.	+	0	Parent=Os10t0477000-01
Chr10	irgsp1_rep	CDS	17783212	17783323	.	+	2	Parent=Os10t0477000-01
Chr10	irgsp1_rep	CDS	17783412	17783498	.	+	1	Parent=Os10t0477000-01
Chr10	irgsp1_rep	CDS	17783668	17783806	.	+	1	Parent=Os10t0477000-01
Chr10	irgsp1_rep	CDS	17784593	17784683	.	+	0	Parent=Os10t0477000-01
Chr10	irgsp1_rep	CDS	17784786	17784848	.	+	2	Parent=Os10t0477000-01
Chr10	irgsp1_rep	CDS	17785010	17785119	.	+	2	Parent=Os10t0477000-01
Chr10	irgsp1_rep	CDS	17785274	17785378	.	+	0	Parent=Os10t0477000-01
Chr10	irgsp1_rep	CDS	17785947	17786020	.	+	0	Parent=Os10t0477000-01
Chr10	irgsp1_rep	CDS	17786344	17786419	.	+	1	Parent=Os10t0477000-01
Chr10	irgsp1_rep	CDS	17786751	17786987	.	+	0	Parent=Os10t0477000-01
Chr10	irgsp1_rep	CDS	17787384	17787455	.	+	0	Parent=Os10t0477000-01
Chr10	irgsp1_rep	CDS	17788047	17788118	.	+	0	Parent=Os10t0477000-01
Chr10	irgsp1_rep	CDS	17788205	17788269	.	+	0	Parent=Os10t0477000-01
Chr10	irgsp1_rep	CDS	17788349	17788451	.	+	1	Parent=Os10t0477000-01
Chr10	irgsp1_rep	CDS	17788514	17788641	.	+	0	Parent=Os10t0477000-01
Chr10	irgsp1_rep	CDS	17788730	17788877	.	+	1	Parent=Os10t0477000-01
Chr10	irgsp1_rep	CDS	17789838	17789945	.	+	0	Parent=Os10t0477000-01
Chr10	irgsp1_rep	CDS	17790028	17790078	.	+	0	Parent=Os10t0477000-01
Chr10	irgsp1_rep	CDS	17791091	17791168	.	+	0	Parent=Os10t0477000-01
Chr10	irgsp1_rep	CDS	17791249	17791359	.	+	0	Parent=Os10t0477000-01
Chr10	irgsp1_rep	CDS	17791906	17792105	.	+	0	Parent=Os10t0477000-01
Chr10	irgsp1_rep	CDS	17792208	17792277	.	+	1	Parent=Os10t0477000-01
Chr10	irgsp1_rep	CDS	17792605	17792793	.	+	0	Parent=Os10t0477000-01
Chr10	irgsp1_rep	three_prime_UTR	17792794	17793323	.	+	.	Parent=Os10t0477000-01
Chr10	irgsp1_rep	mRNA	17794333	17799688	.	+	.	ID=Os10t0477100-01;Name=Os10t0477100-01;Locus_id=Os10g0477100;Note=Similar to Ankyrin-like protein.;Transcript_evidence=AK067258 (DDBJ%2C Best hit);ORF_evidence=NP_567427.1 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Protein of unknown function DUF248%2C methyltransferase putative (IPR004159);NIAS_FLcDNA=J013095H15;Expression=AK067258;TENOR=Os10t0477100-01;KEGG=Os10t0477100-01
Chr10	irgsp1_rep	five_prime_UTR	17794333	17794536	.	+	.	Parent=Os10t0477100-01
Chr10	irgsp1_rep	five_prime_UTR	17795432	17795524	.	+	.	Parent=Os10t0477100-01
Chr10	irgsp1_rep	CDS	17795525	17795776	.	+	0	Parent=Os10t0477100-01
Chr10	irgsp1_rep	CDS	17795866	17796030	.	+	0	Parent=Os10t0477100-01
Chr10	irgsp1_rep	CDS	17796270	17796452	.	+	0	Parent=Os10t0477100-01
Chr10	irgsp1_rep	CDS	17796572	17797166	.	+	0	Parent=Os10t0477100-01
Chr10	irgsp1_rep	CDS	17797828	17797940	.	+	2	Parent=Os10t0477100-01
Chr10	irgsp1_rep	CDS	17798071	17798291	.	+	0	Parent=Os10t0477100-01
Chr10	irgsp1_rep	CDS	17799078	17799402	.	+	1	Parent=Os10t0477100-01
Chr10	irgsp1_rep	three_prime_UTR	17799403	17799688	.	+	.	Parent=Os10t0477100-01
Chr10	irgsp1_rep	mRNA	17800146	17803220	.	-	.	ID=Os10t0477200-01;Name=Os10t0477200-01;Locus_id=Os10g0477200;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK067154 (DDBJ%2C Best hit);ORF_evidence=A3C5Q7 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013097P22;Expression=AK067154;TENOR=Os10t0477200-01;KEGG=Os10t0477200-01
Chr10	irgsp1_rep	five_prime_UTR	17803169	17803220	.	-	.	Parent=Os10t0477200-01
Chr10	irgsp1_rep	CDS	17801069	17803168	.	-	0	Parent=Os10t0477200-01
Chr10	irgsp1_rep	three_prime_UTR	17800146	17801068	.	-	.	Parent=Os10t0477200-01
Chr10	irgsp1_rep	mRNA	17811756	17815770	.	-	.	ID=Os10t0477301-01;Name=Os10t0477301-01;Locus_id=Os10g0477301;Note=Conserved hypothetical protein.;Transcript_evidence=AK288518 (DDBJ%2C Best hit);ORF_evidence=Q69WY5 (UniProt);NIAS_FLcDNA=J090043E02;TENOR=Os10t0477301-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	17815143	17815770	.	-	.	Parent=Os10t0477301-01
Chr10	irgsp1_rep	CDS	17814819	17815142	.	-	0	Parent=Os10t0477301-01
Chr10	irgsp1_rep	three_prime_UTR	17811756	17814818	.	-	.	Parent=Os10t0477301-01
Chr10	irgsp1_rep	mRNA	17849091	17851345	.	+	.	ID=Os10t0477600-01;Name=Os10t0477600-01;Locus_id=Os10g0477600;CGSNL Gene Symbol=NAC120;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 120;Oryzabase Gene Symbol Synonym(s)=ONAC120;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 120;Note=Similar to NAM / CUC2-like protein.;Transcript_evidence=AK119558 (DDBJ%2C Best hit);ORF_evidence=D8UUZ6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=002-106-A07;Oryzabase=15881;Expression=AK119558;TENOR=Os10t0477600-01;KEGG=Os10t0477600-01
Chr10	irgsp1_rep	five_prime_UTR	17849091	17849247	.	+	.	Parent=Os10t0477600-01
Chr10	irgsp1_rep	CDS	17849248	17849419	.	+	0	Parent=Os10t0477600-01
Chr10	irgsp1_rep	CDS	17850087	17850352	.	+	2	Parent=Os10t0477600-01
Chr10	irgsp1_rep	CDS	17850485	17851021	.	+	0	Parent=Os10t0477600-01
Chr10	irgsp1_rep	three_prime_UTR	17851022	17851345	.	+	.	Parent=Os10t0477600-01
Chr10	irgsp1_rep	mRNA	17857988	17872546	.	+	.	ID=Os10t0477800-01;Name=Os10t0477800-01;Locus_id=Os10g0477800;Note=Similar to Nuclear transportin.;Transcript_evidence=AK102336 (DDBJ%2C Best hit);ORF_evidence=Q2QKB7 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Molecular Function: binding (GO:0005488),Molecular Function: protein transporter activity (GO:0008565);InterPro=Importin-beta%2C N-terminal (IPR001494),Armadillo-like helical (IPR011989),Exportin-1/Importin-beta-like (IPR013598),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033091A14;TENOR=Os10t0477800-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	17857988	17858208	.	+	.	Parent=Os10t0477800-01
Chr10	irgsp1_rep	CDS	17858209	17858337	.	+	0	Parent=Os10t0477800-01
Chr10	irgsp1_rep	CDS	17859281	17859358	.	+	0	Parent=Os10t0477800-01
Chr10	irgsp1_rep	CDS	17859461	17859523	.	+	0	Parent=Os10t0477800-01
Chr10	irgsp1_rep	CDS	17859801	17859848	.	+	0	Parent=Os10t0477800-01
Chr10	irgsp1_rep	CDS	17860168	17860314	.	+	0	Parent=Os10t0477800-01
Chr10	irgsp1_rep	CDS	17861229	17861360	.	+	0	Parent=Os10t0477800-01
Chr10	irgsp1_rep	CDS	17861870	17861910	.	+	0	Parent=Os10t0477800-01
Chr10	irgsp1_rep	CDS	17862064	17862155	.	+	1	Parent=Os10t0477800-01
Chr10	irgsp1_rep	CDS	17863934	17864061	.	+	2	Parent=Os10t0477800-01
Chr10	irgsp1_rep	CDS	17864884	17864959	.	+	0	Parent=Os10t0477800-01
Chr10	irgsp1_rep	CDS	17865076	17865196	.	+	2	Parent=Os10t0477800-01
Chr10	irgsp1_rep	CDS	17865265	17865364	.	+	1	Parent=Os10t0477800-01
Chr10	irgsp1_rep	CDS	17865456	17865537	.	+	0	Parent=Os10t0477800-01
Chr10	irgsp1_rep	CDS	17865629	17865711	.	+	2	Parent=Os10t0477800-01
Chr10	irgsp1_rep	CDS	17866943	17867053	.	+	0	Parent=Os10t0477800-01
Chr10	irgsp1_rep	CDS	17867225	17867276	.	+	0	Parent=Os10t0477800-01
Chr10	irgsp1_rep	CDS	17867670	17867825	.	+	2	Parent=Os10t0477800-01
Chr10	irgsp1_rep	CDS	17868093	17868216	.	+	2	Parent=Os10t0477800-01
Chr10	irgsp1_rep	CDS	17868311	17868392	.	+	1	Parent=Os10t0477800-01
Chr10	irgsp1_rep	CDS	17868470	17868558	.	+	0	Parent=Os10t0477800-01
Chr10	irgsp1_rep	CDS	17868633	17868707	.	+	1	Parent=Os10t0477800-01
Chr10	irgsp1_rep	CDS	17868803	17868857	.	+	1	Parent=Os10t0477800-01
Chr10	irgsp1_rep	CDS	17869442	17869561	.	+	0	Parent=Os10t0477800-01
Chr10	irgsp1_rep	CDS	17869636	17869728	.	+	0	Parent=Os10t0477800-01
Chr10	irgsp1_rep	CDS	17869835	17869980	.	+	0	Parent=Os10t0477800-01
Chr10	irgsp1_rep	CDS	17870118	17870295	.	+	1	Parent=Os10t0477800-01
Chr10	irgsp1_rep	CDS	17871842	17872129	.	+	0	Parent=Os10t0477800-01
Chr10	irgsp1_rep	three_prime_UTR	17872130	17872546	.	+	.	Parent=Os10t0477800-01
Chr10	irgsp1_rep	mRNA	17859801	17867055	.	+	.	ID=Os10t0477800-02;Name=Os10t0477800-02;Locus_id=Os10g0477800;Note=Similar to Importin-beta N-terminal domain containing protein.;Transcript_evidence=AK059629 (DDBJ%2C Best hit);ORF_evidence=Q7XDD1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Exportin-1/Importin-beta-like (IPR013598),Armadillo-type fold (IPR016024);NIAS_FLcDNA=001-031-A01;TENOR=Os10t0477800-02
Chr10	irgsp1_rep	CDS	17859801	17859848	.	+	0	Parent=Os10t0477800-02
Chr10	irgsp1_rep	CDS	17860168	17860314	.	+	0	Parent=Os10t0477800-02
Chr10	irgsp1_rep	CDS	17861229	17861360	.	+	0	Parent=Os10t0477800-02
Chr10	irgsp1_rep	CDS	17861870	17861910	.	+	0	Parent=Os10t0477800-02
Chr10	irgsp1_rep	CDS	17862064	17862155	.	+	1	Parent=Os10t0477800-02
Chr10	irgsp1_rep	CDS	17863934	17864061	.	+	2	Parent=Os10t0477800-02
Chr10	irgsp1_rep	CDS	17864884	17864959	.	+	0	Parent=Os10t0477800-02
Chr10	irgsp1_rep	CDS	17865076	17865196	.	+	2	Parent=Os10t0477800-02
Chr10	irgsp1_rep	CDS	17865265	17865364	.	+	1	Parent=Os10t0477800-02
Chr10	irgsp1_rep	CDS	17865456	17865537	.	+	0	Parent=Os10t0477800-02
Chr10	irgsp1_rep	CDS	17865629	17865711	.	+	2	Parent=Os10t0477800-02
Chr10	irgsp1_rep	CDS	17866943	17867055	.	+	0	Parent=Os10t0477800-02
Chr10	irgsp1_rep	mRNA	17873385	17876746	.	-	.	ID=Os10t0477900-00;Name=Os10t0477900-00;Locus_id=Os10g0477900;Note=Similar to NAD dependent epimerase/dehydratase family protein%2C expressed.;Transcript_evidence=AK373696 (DDBJ);ORF_evidence=Q109J4 (UniProt);GO=Biological Process: steroid biosynthetic process (GO:0006694),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: 3-beta-hydroxy-delta5-steroid dehydrogenase activity (GO:0003854),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616);InterPro=3-beta hydroxysteroid dehydrogenase/isomerase (IPR002225),NAD(P)-binding domain (IPR016040);TENOR=Os10t0477900-00
Chr10	irgsp1_rep	CDS	17876549	17876746	.	-	0	Parent=Os10t0477900-00
Chr10	irgsp1_rep	CDS	17875644	17875878	.	-	0	Parent=Os10t0477900-00
Chr10	irgsp1_rep	CDS	17874899	17875045	.	-	2	Parent=Os10t0477900-00
Chr10	irgsp1_rep	CDS	17874561	17874784	.	-	2	Parent=Os10t0477900-00
Chr10	irgsp1_rep	CDS	17873390	17873563	.	-	0	Parent=Os10t0477900-00
Chr10	irgsp1_rep	three_prime_UTR	17873385	17873389	.	-	.	Parent=Os10t0477900-00
Chr10	irgsp1_rep	mRNA	17888297	17889724	.	-	.	ID=Os10t0478000-01;Name=Os10t0478000-01;Locus_id=Os10g0478000;RAP-DB Gene Symbol Synonym(s)=G1L5%2C OsG1L5%2C TAW1;RAP-DB Gene Name Synonym(s)=G1 LIKE PROTEIN 5%2C TAWAWA1;CGSNL Gene Symbol=G1L5;CGSNL Gene Name=G1 LIKE PROTEIN 5;Oryzabase Gene Symbol Synonym(s)=OsG1L5%2C TAW1%2C OsTAW1;Oryzabase Gene Name Synonym(s)=TAWAWA1;Note=Transcriptional regulator%2C Regulator of meristem activity%2C Regulation of inflorescence development;Transcript_evidence=AK243306,AB512494;ORF_evidence=Q7XDD0;InterPro=ALOG domain (IPR006936);NIAS_FLcDNA=J100055D15;Manual Curation=July 5%2C 2016;Literature_PMID=23267064,19901325;Oryzabase=8886;TENOR=Os10t0478000-01;KEGG=Os10t0478000-01
Chr10	irgsp1_rep	five_prime_UTR	17889439	17889724	.	-	.	Parent=Os10t0478000-01
Chr10	irgsp1_rep	five_prime_UTR	17889114	17889120	.	-	.	Parent=Os10t0478000-01
Chr10	irgsp1_rep	CDS	17888499	17889113	.	-	0	Parent=Os10t0478000-01
Chr10	irgsp1_rep	three_prime_UTR	17888297	17888498	.	-	.	Parent=Os10t0478000-01
Chr10	irgsp1_rep	mRNA	17905870	17910800	.	-	.	ID=Os10t0478100-01;Name=Os10t0478100-01;Locus_id=Os10g0478100;Note=Heat shock protein DnaJ%2C N-terminal domain containing protein.;Transcript_evidence=AK072265 (DDBJ%2C Best hit),AK099202 (DDBJ%2C Best hit);ORF_evidence=XP_002892466.1 (RefSeq);GO=Molecular Function: heat shock protein binding (GO:0031072);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Protein of unknown function DUF3353 (IPR021788);NIAS_FLcDNA=J023006K06,J023116K03;Expression=AK072265;TENOR=Os10t0478100-01;KEGG=Os10t0478100-01
Chr10	irgsp1_rep	five_prime_UTR	17910672	17910800	.	-	.	Parent=Os10t0478100-01
Chr10	irgsp1_rep	CDS	17910538	17910671	.	-	0	Parent=Os10t0478100-01
Chr10	irgsp1_rep	CDS	17910251	17910359	.	-	1	Parent=Os10t0478100-01
Chr10	irgsp1_rep	CDS	17910019	17910123	.	-	0	Parent=Os10t0478100-01
Chr10	irgsp1_rep	CDS	17909855	17909932	.	-	0	Parent=Os10t0478100-01
Chr10	irgsp1_rep	CDS	17909200	17909255	.	-	0	Parent=Os10t0478100-01
Chr10	irgsp1_rep	CDS	17908749	17908806	.	-	1	Parent=Os10t0478100-01
Chr10	irgsp1_rep	CDS	17908321	17908446	.	-	0	Parent=Os10t0478100-01
Chr10	irgsp1_rep	CDS	17907181	17907276	.	-	0	Parent=Os10t0478100-01
Chr10	irgsp1_rep	CDS	17906992	17907063	.	-	0	Parent=Os10t0478100-01
Chr10	irgsp1_rep	CDS	17906303	17906365	.	-	0	Parent=Os10t0478100-01
Chr10	irgsp1_rep	three_prime_UTR	17905870	17906302	.	-	.	Parent=Os10t0478100-01
Chr10	irgsp1_rep	mRNA	17906161	17910764	.	-	.	ID=Os10t0478100-02;Name=Os10t0478100-02;Locus_id=Os10g0478100;Note=Heat shock protein DnaJ%2C N-terminal domain containing protein.;Transcript_evidence=AK061181 (DDBJ%2C Best hit);ORF_evidence=XP_002892466.1 (RefSeq);GO=Molecular Function: heat shock protein binding (GO:0031072);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Protein of unknown function DUF3353 (IPR021788);NIAS_FLcDNA=006-209-D05;Expression=AK061181;TENOR=Os10t0478100-02;KEGG=Os10t0478100-02
Chr10	irgsp1_rep	five_prime_UTR	17910672	17910764	.	-	.	Parent=Os10t0478100-02
Chr10	irgsp1_rep	CDS	17910538	17910671	.	-	0	Parent=Os10t0478100-02
Chr10	irgsp1_rep	CDS	17910251	17910359	.	-	1	Parent=Os10t0478100-02
Chr10	irgsp1_rep	CDS	17910019	17910123	.	-	0	Parent=Os10t0478100-02
Chr10	irgsp1_rep	CDS	17909855	17909932	.	-	0	Parent=Os10t0478100-02
Chr10	irgsp1_rep	CDS	17909200	17909255	.	-	0	Parent=Os10t0478100-02
Chr10	irgsp1_rep	CDS	17908749	17908806	.	-	1	Parent=Os10t0478100-02
Chr10	irgsp1_rep	CDS	17908321	17908446	.	-	0	Parent=Os10t0478100-02
Chr10	irgsp1_rep	CDS	17907181	17907276	.	-	0	Parent=Os10t0478100-02
Chr10	irgsp1_rep	CDS	17906992	17907063	.	-	0	Parent=Os10t0478100-02
Chr10	irgsp1_rep	CDS	17906303	17906365	.	-	0	Parent=Os10t0478100-02
Chr10	irgsp1_rep	three_prime_UTR	17906161	17906302	.	-	.	Parent=Os10t0478100-02
Chr10	irgsp1_rep	mRNA	17913831	17917765	.	+	.	ID=Os10t0478200-01;Name=Os10t0478200-01;Locus_id=Os10g0478200;RAP-DB Gene Symbol Synonym(s)=FLO16%2C CMDH%2C OscMDH;RAP-DB Gene Name Synonym(s)=FLOURY ENDOSPERM16%2C Cytosolic Malate Dehydrogenase;CGSNL Gene Symbol=FLO16;CGSNL Gene Name=FLOURY ENDOSPERM16;Oryzabase Gene Symbol Synonym(s)=CMDH%2C OscMDH%2C cMDH%2C OsMDH%2C MDH%2C OsFLO16;Oryzabase Gene Name Synonym(s)=cytoplasmic malate dehydrogenase%2C malate dehydrogenase%2C NAD-dependent cytosolic malate dehydrogenase;Note=NAD-dependent cytosolic malate dehydrogenase (CMDH)%2C Starch synthesis%2C Seed development;Transcript_evidence=AK066396,AK104691;ORF_evidence=Q7XDC8;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: malate metabolic process (GO:0006108),Biological Process: carboxylic acid metabolic process (GO:0019752),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: malate dehydrogenase activity (GO:0016615),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: L-malate dehydrogenase activity (GO:0030060);InterPro=NAD(P)-binding domain superfamily (IPR036291),Lactate dehydrogenase/glycoside hydrolase%2C family 4%2C C-terminal (IPR015955),L-lactate/malate dehydrogenase (IPR001557),Malate dehydrogenase%2C type 2 (IPR010945),Malate dehydrogenase%2C NAD-dependent%2C cytosolic (IPR011274),Lactate/malate dehydrogenase%2C N-terminal (IPR001236),Lactate/malate dehydrogenase%2C C-terminal (IPR022383),Malate dehydrogenase%2C active site (IPR001252);NIAS_FLcDNA=J013064D20,001-036-G07;Manual Curation=March 15%2C 2019;Literature_PMID=30860317,15620222;Oryzabase=15694;TENOR=Os10t0478200-01;Subcellular location=cytosol (GO:0005829)
Chr10	irgsp1_rep	five_prime_UTR	17913831	17913937	.	+	.	Parent=Os10t0478200-01
Chr10	irgsp1_rep	CDS	17913938	17913980	.	+	0	Parent=Os10t0478200-01
Chr10	irgsp1_rep	CDS	17915789	17915947	.	+	2	Parent=Os10t0478200-01
Chr10	irgsp1_rep	CDS	17916032	17916207	.	+	2	Parent=Os10t0478200-01
Chr10	irgsp1_rep	CDS	17916531	17916808	.	+	0	Parent=Os10t0478200-01
Chr10	irgsp1_rep	CDS	17916904	17917039	.	+	1	Parent=Os10t0478200-01
Chr10	irgsp1_rep	CDS	17917149	17917260	.	+	0	Parent=Os10t0478200-01
Chr10	irgsp1_rep	CDS	17917387	17917481	.	+	2	Parent=Os10t0478200-01
Chr10	irgsp1_rep	three_prime_UTR	17917482	17917765	.	+	.	Parent=Os10t0478200-01
Chr10	irgsp1_rep	mRNA	17923596	17926286	.	-	.	ID=Os10t0478300-01;Name=Os10t0478300-01;Locus_id=Os10g0478300;RAP-DB Gene Symbol Synonym(s)=MYB110;Oryzabase Gene Symbol Synonym(s)=OsMyb9%2C OsMyb8%2C OsMYB110%2C Myb9%2C Myb8%2C MYB110;Oryzabase Gene Name Synonym(s)=myb transcription factor 9%2C transcription factor MYB9;Note=SG2-type MYB transcription factor%2C Resistance to fungal and bacterial pathogens;Transcript_evidence=AK109011;ORF_evidence=Q7XDC7;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeobox-like domain superfamily (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930);NIAS_FLcDNA=002-153-H11;Manual Curation=May 29%2C 2018;Literature_PMID=29562362;Oryzabase=10250;Expression=AK109011;TENOR=Os10t0478300-01;KEGG=Os10t0478300-01
Chr10	irgsp1_rep	five_prime_UTR	17926035	17926286	.	-	.	Parent=Os10t0478300-01
Chr10	irgsp1_rep	CDS	17925902	17926034	.	-	0	Parent=Os10t0478300-01
Chr10	irgsp1_rep	CDS	17925677	17925806	.	-	2	Parent=Os10t0478300-01
Chr10	irgsp1_rep	CDS	17923839	17924406	.	-	1	Parent=Os10t0478300-01
Chr10	irgsp1_rep	three_prime_UTR	17923596	17923838	.	-	.	Parent=Os10t0478300-01
Chr10	irgsp1_rep	mRNA	17923858	17924449	.	+	.	ID=Os10t0478350-00;Name=Os10t0478350-00;Locus_id=Os10g0478350;Note=Hypothetical protein.;Transcript_evidence=EU971393 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0478350-00
Chr10	irgsp1_rep	five_prime_UTR	17923858	17923860	.	+	.	Parent=Os10t0478350-00
Chr10	irgsp1_rep	CDS	17923861	17924340	.	+	0	Parent=Os10t0478350-00
Chr10	irgsp1_rep	three_prime_UTR	17924341	17924449	.	+	.	Parent=Os10t0478350-00
Chr10	irgsp1_rep	mRNA	17938795	17940533	.	-	.	ID=Os10t0478400-00;Name=Os10t0478400-00;Locus_id=Os10g0478400;Note=Conserved hypothetical protein.;Transcript_evidence=BT062891 (DDBJ);ORF_evidence=NP_001064862.1 (RefSeq);TENOR=Os10t0478400-00;KEGG=Os10t0478400-00
Chr10	irgsp1_rep	CDS	17939160	17940533	.	-	0	Parent=Os10t0478400-00
Chr10	irgsp1_rep	three_prime_UTR	17938795	17939159	.	-	.	Parent=Os10t0478400-00
Chr10	irgsp1_rep	mRNA	17945273	17946549	.	-	.	ID=Os10t0478450-00;Name=Os10t0478450-00;Locus_id=Os10g0478450;Oryzabase Gene Symbol Synonym(s)=Os2M1%2C 2M1;Oryzabase Gene Name Synonym(s)=two MATH domain containing MDC protein 1%2C MDC protein having two MATH domains 1;Note=MATH domain containing protein.;Transcript_evidence=AK250432 (DDBJ);ORF_evidence=NP_001176210.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=MATH (IPR002083),TRAF-like (IPR008974),TRAF-type (IPR013322);Oryzabase=21249;TENOR=Os10t0478450-00
Chr10	irgsp1_rep	five_prime_UTR	17946532	17946549	.	-	.	Parent=Os10t0478450-00
Chr10	irgsp1_rep	CDS	17946200	17946531	.	-	0	Parent=Os10t0478450-00
Chr10	irgsp1_rep	CDS	17945613	17945779	.	-	1	Parent=Os10t0478450-00
Chr10	irgsp1_rep	CDS	17945282	17945436	.	-	2	Parent=Os10t0478450-00
Chr10	irgsp1_rep	three_prime_UTR	17945273	17945281	.	-	.	Parent=Os10t0478450-00
Chr10	irgsp1_rep	mRNA	17949628	17952014	.	-	.	ID=Os10t0478500-00;Name=Os10t0478500-00;Locus_id=Os10g0478500;Oryzabase Gene Symbol Synonym(s)=Os2M1%2C 2M1;Oryzabase Gene Name Synonym(s)=two MATH domain containing MDC protein 1%2C MDC protein having two MATH domains 1;Note=MATH domain containing protein.;Transcript_evidence=tplb0053j09 (Wheat FLcDNA);ORF_evidence=B8BHH0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=MATH (IPR002083),TRAF-like (IPR008974),TRAF-type (IPR013322);Oryzabase=21249;TENOR=Os10t0478500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	17951860	17952014	.	-	0	Parent=Os10t0478500-00
Chr10	irgsp1_rep	CDS	17951360	17951526	.	-	1	Parent=Os10t0478500-00
Chr10	irgsp1_rep	CDS	17950789	17951057	.	-	2	Parent=Os10t0478500-00
Chr10	irgsp1_rep	three_prime_UTR	17950719	17950788	.	-	.	Parent=Os10t0478500-00
Chr10	irgsp1_rep	three_prime_UTR	17950100	17950263	.	-	.	Parent=Os10t0478500-00
Chr10	irgsp1_rep	three_prime_UTR	17949628	17950001	.	-	.	Parent=Os10t0478500-00
Chr10	irgsp1_rep	mRNA	17960480	17964480	.	-	.	ID=Os10t0478600-01;Name=Os10t0478600-01;Locus_id=Os10g0478600;Note=Conserved hypothetical protein.;Transcript_evidence=AK073485 (DDBJ%2C Best hit);ORF_evidence=B8BHH2 (UniProt);NIAS_FLcDNA=J033043A18;Expression=AK073485;TENOR=Os10t0478600-01;KEGG=Os10t0478600-01
Chr10	irgsp1_rep	five_prime_UTR	17963734	17964480	.	-	.	Parent=Os10t0478600-01
Chr10	irgsp1_rep	CDS	17963500	17963733	.	-	0	Parent=Os10t0478600-01
Chr10	irgsp1_rep	CDS	17962853	17963065	.	-	0	Parent=Os10t0478600-01
Chr10	irgsp1_rep	three_prime_UTR	17961119	17962852	.	-	.	Parent=Os10t0478600-01
Chr10	irgsp1_rep	three_prime_UTR	17960480	17961028	.	-	.	Parent=Os10t0478600-01
Chr10	irgsp1_rep	mRNA	17965942	17966981	.	+	.	ID=Os10t0478750-00;Name=Os10t0478750-00;Locus_id=Os10g0478750;Note=Hypothetical protein.;Transcript_evidence=AK374499 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0478750-00
Chr10	irgsp1_rep	five_prime_UTR	17965942	17966692	.	+	.	Parent=Os10t0478750-00
Chr10	irgsp1_rep	CDS	17966693	17966941	.	+	0	Parent=Os10t0478750-00
Chr10	irgsp1_rep	three_prime_UTR	17966942	17966981	.	+	.	Parent=Os10t0478750-00
Chr10	irgsp1_rep	mRNA	17967690	17971234	.	+	.	ID=Os10t0478900-01;Name=Os10t0478900-01;Locus_id=Os10g0478900;Note=Conserved hypothetical protein.;Transcript_evidence=AK062836 (DDBJ%2C Best hit);ORF_evidence=XP_002467074.1 (RefSeq);NIAS_FLcDNA=001-107-G12;Expression=AK062836;TENOR=Os10t0478900-01;KEGG=Os10t0478900-01
Chr10	irgsp1_rep	five_prime_UTR	17967690	17967731	.	+	.	Parent=Os10t0478900-01
Chr10	irgsp1_rep	CDS	17967732	17967950	.	+	0	Parent=Os10t0478900-01
Chr10	irgsp1_rep	CDS	17968025	17968090	.	+	0	Parent=Os10t0478900-01
Chr10	irgsp1_rep	three_prime_UTR	17968091	17968108	.	+	.	Parent=Os10t0478900-01
Chr10	irgsp1_rep	three_prime_UTR	17970759	17971234	.	+	.	Parent=Os10t0478900-01
Chr10	irgsp1_rep	mRNA	17971731	17973666	.	-	.	ID=Os10t0479001-01;Name=Os10t0479001-01;Locus_id=Os10g0479001;Note=Hypothetical gene.;Transcript_evidence=AK243174 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100036G16;TENOR=Os10t0479001-01;KEGG=Os10t0479001-01
Chr10	irgsp1_rep	CDS	17973478	17973666	.	-	0	Parent=Os10t0479001-01
Chr10	irgsp1_rep	CDS	17971924	17972031	.	-	0	Parent=Os10t0479001-01
Chr10	irgsp1_rep	three_prime_UTR	17971731	17971923	.	-	.	Parent=Os10t0479001-01
Chr10	irgsp1_rep	mRNA	17974475	17975796	.	-	.	ID=Os10t0479100-01;Name=Os10t0479100-01;Locus_id=Os10g0479100;Note=Non-protein coding transcript.;Transcript_evidence=AK062758 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-106-G10;TENOR=Os10t0479100-01
Chr10	irgsp1_rep	exon	17975644	17975796	.	-	.	Parent=Os10t0479100-01
Chr10	irgsp1_rep	exon	17974475	17974857	.	-	.	Parent=Os10t0479100-01
Chr10	irgsp1_rep	mRNA	17980197	17980737	.	+	.	ID=Os10t0479200-00;Name=Os10t0479200-00;Locus_id=Os10g0479200;Note=Conserved hypothetical protein.;Transcript_evidence=EU952899 (DDBJ);ORF_evidence=NP_001064867.2 (RefSeq);TENOR=Os10t0479200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	17980197	17980293	.	+	.	Parent=Os10t0479200-00
Chr10	irgsp1_rep	CDS	17980294	17980737	.	+	0	Parent=Os10t0479200-00
Chr10	irgsp1_rep	mRNA	18000856	18005796	.	+	.	ID=Os10t0479500-01;Name=Os10t0479500-01;Locus_id=Os10g0479500;CGSNL Gene Symbol=LOGL10;CGSNL Gene Name=LONELY GUY LIKE PHOSPHORIBOHYDROLASE 10;Oryzabase Gene Symbol Synonym(s)=LOGL10;Oryzabase Gene Name Synonym(s)=LOG LIKE phosphoribohydrolase 10%2C LOG LIKE 10;Note=Similar to carboxy-lyase.;Transcript_evidence=AK108805 (DDBJ%2C Best hit);ORF_evidence=NP_001148891.1 (RefSeq);InterPro=Cytokinin riboside 5&apos%3B-monophosphate phosphoribohydrolase LOG (IPR005269);NIAS_FLcDNA=002-151-D01;Oryzabase=9855;TENOR=Os10t0479500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	18000856	18001074	.	+	.	Parent=Os10t0479500-01
Chr10	irgsp1_rep	CDS	18001075	18001176	.	+	0	Parent=Os10t0479500-01
Chr10	irgsp1_rep	CDS	18001998	18002095	.	+	0	Parent=Os10t0479500-01
Chr10	irgsp1_rep	CDS	18002297	18002327	.	+	1	Parent=Os10t0479500-01
Chr10	irgsp1_rep	CDS	18004269	18004368	.	+	0	Parent=Os10t0479500-01
Chr10	irgsp1_rep	CDS	18004794	18004864	.	+	2	Parent=Os10t0479500-01
Chr10	irgsp1_rep	CDS	18004954	18005097	.	+	0	Parent=Os10t0479500-01
Chr10	irgsp1_rep	CDS	18005215	18005283	.	+	0	Parent=Os10t0479500-01
Chr10	irgsp1_rep	three_prime_UTR	18005284	18005796	.	+	.	Parent=Os10t0479500-01
Chr10	irgsp1_rep	mRNA	18006974	18009702	.	+	.	ID=Os10t0479600-01;Name=Os10t0479600-01;Locus_id=Os10g0479600;Note=Protein Transporter%2C Pam16 family protein.;Transcript_evidence=AK063255 (DDBJ%2C Best hit);ORF_evidence=NP_001152588.1 (RefSeq);GO=Molecular Function: heat shock protein binding (GO:0031072);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Protein Transporter%2C Pam16 (IPR005341);NIAS_FLcDNA=001-112-H08;Expression=AK063255;TENOR=Os10t0479600-01;KEGG=Os10t0479600-01
Chr10	irgsp1_rep	five_prime_UTR	18006974	18007022	.	+	.	Parent=Os10t0479600-01
Chr10	irgsp1_rep	CDS	18007023	18007025	.	+	0	Parent=Os10t0479600-01
Chr10	irgsp1_rep	CDS	18007805	18007892	.	+	0	Parent=Os10t0479600-01
Chr10	irgsp1_rep	CDS	18008978	18009108	.	+	2	Parent=Os10t0479600-01
Chr10	irgsp1_rep	CDS	18009232	18009360	.	+	0	Parent=Os10t0479600-01
Chr10	irgsp1_rep	three_prime_UTR	18009361	18009702	.	+	.	Parent=Os10t0479600-01
Chr10	irgsp1_rep	mRNA	18011909	18018898	.	+	.	ID=Os10t0479700-01;Name=Os10t0479700-01;Locus_id=Os10g0479700;Note=Protein of unknown function DUF250 domain containing protein.;Transcript_evidence=AK103346 (DDBJ%2C Best hit);ORF_evidence=B6UA14 (UniProt);InterPro=Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=J033126D12;Expression=AK103346;TENOR=Os10t0479700-01;KEGG=Os10t0479700-01
Chr10	irgsp1_rep	five_prime_UTR	18011909	18012117	.	+	.	Parent=Os10t0479700-01
Chr10	irgsp1_rep	five_prime_UTR	18015692	18015713	.	+	.	Parent=Os10t0479700-01
Chr10	irgsp1_rep	CDS	18015714	18015843	.	+	0	Parent=Os10t0479700-01
Chr10	irgsp1_rep	CDS	18016020	18016201	.	+	2	Parent=Os10t0479700-01
Chr10	irgsp1_rep	CDS	18016284	18016354	.	+	0	Parent=Os10t0479700-01
Chr10	irgsp1_rep	CDS	18016482	18016614	.	+	1	Parent=Os10t0479700-01
Chr10	irgsp1_rep	CDS	18016748	18016909	.	+	0	Parent=Os10t0479700-01
Chr10	irgsp1_rep	CDS	18017588	18017878	.	+	0	Parent=Os10t0479700-01
Chr10	irgsp1_rep	CDS	18018473	18018616	.	+	0	Parent=Os10t0479700-01
Chr10	irgsp1_rep	three_prime_UTR	18018617	18018898	.	+	.	Parent=Os10t0479700-01
Chr10	irgsp1_rep	mRNA	18016284	18018928	.	+	.	ID=Os10t0479700-02;Name=Os10t0479700-02;Locus_id=Os10g0479700;Note=Similar to Integral membrane protein like.;Transcript_evidence=AK109405 (DDBJ%2C Best hit);ORF_evidence=B6UA14 (UniProt);InterPro=Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=006-302-H02;Expression=AK109405;TENOR=Os10t0479700-02;KEGG=Os10t0479700-02
Chr10	irgsp1_rep	CDS	18016284	18016354	.	+	0	Parent=Os10t0479700-02
Chr10	irgsp1_rep	CDS	18016482	18016614	.	+	1	Parent=Os10t0479700-02
Chr10	irgsp1_rep	CDS	18016748	18016909	.	+	0	Parent=Os10t0479700-02
Chr10	irgsp1_rep	CDS	18017588	18017878	.	+	0	Parent=Os10t0479700-02
Chr10	irgsp1_rep	CDS	18018473	18018616	.	+	0	Parent=Os10t0479700-02
Chr10	irgsp1_rep	three_prime_UTR	18018617	18018928	.	+	.	Parent=Os10t0479700-02
Chr10	irgsp1_rep	mRNA	18038745	18040810	.	+	.	ID=Os10t0479800-01;Name=Os10t0479800-01;Locus_id=Os10g0479800;Note=Protein of unknown function DUF1336 domain containing protein.;Transcript_evidence=AK107572 (DDBJ%2C Best hit);ORF_evidence=NP_180399.2 (RefSeq);InterPro=Domain of unknown function DUF1336 (IPR009769);NIAS_FLcDNA=002-130-D04;Expression=AK107572;TENOR=Os10t0479800-01;KEGG=Os10t0479800-01
Chr10	irgsp1_rep	five_prime_UTR	18038745	18038745	.	+	.	Parent=Os10t0479800-01
Chr10	irgsp1_rep	CDS	18038746	18038814	.	+	0	Parent=Os10t0479800-01
Chr10	irgsp1_rep	CDS	18038904	18038999	.	+	0	Parent=Os10t0479800-01
Chr10	irgsp1_rep	CDS	18039324	18039425	.	+	0	Parent=Os10t0479800-01
Chr10	irgsp1_rep	CDS	18039707	18039802	.	+	0	Parent=Os10t0479800-01
Chr10	irgsp1_rep	three_prime_UTR	18039803	18040810	.	+	.	Parent=Os10t0479800-01
Chr10	irgsp1_rep	mRNA	18051857	18056890	.	+	.	ID=Os10t0479900-01;Name=Os10t0479900-01;Locus_id=Os10g0479900;CGSNL Gene Symbol=ARF22;CGSNL Gene Name=AUXIN RESPONSE FACTOR 22;Oryzabase Gene Symbol Synonym(s)=OsARF22;Oryzabase Gene Name Synonym(s)=auxin response factor-22%2C auxin response factor 22;Note=Transcriptional factor B3 family protein.;Transcript_evidence=AK318617 (DDBJ%2C Best hit);ORF_evidence=Q9AV47 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: response to hormone stimulus (GO:0009725),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Transcriptional factor B3 (IPR003340),Auxin response factor (IPR010525),Aux/IAA-ARF-dimerisation (IPR011525),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=J100090H20;Oryzabase=10015;TENOR=Os10t0479900-01;KEGG=Os10t0479900-01
Chr10	irgsp1_rep	five_prime_UTR	18051857	18052099	.	+	.	Parent=Os10t0479900-01
Chr10	irgsp1_rep	five_prime_UTR	18052187	18052225	.	+	.	Parent=Os10t0479900-01
Chr10	irgsp1_rep	CDS	18052226	18053338	.	+	0	Parent=Os10t0479900-01
Chr10	irgsp1_rep	CDS	18055525	18056411	.	+	0	Parent=Os10t0479900-01
Chr10	irgsp1_rep	CDS	18056520	18056616	.	+	1	Parent=Os10t0479900-01
Chr10	irgsp1_rep	three_prime_UTR	18056617	18056890	.	+	.	Parent=Os10t0479900-01
Chr10	irgsp1_rep	mRNA	18085539	18092497	.	+	.	ID=Os10t0480200-01;Name=Os10t0480200-01;Locus_id=Os10g0480200;CGSNL Gene Symbol=HOX9;CGSNL Gene Name=HOMEOBOX GENE 9;Oryzabase Gene Symbol Synonym(s)=Oshox9%2C OsHox9%2C OsHB2%2C HB2%2C OSHB2;Oryzabase Gene Name Synonym(s)=rice homeobox gene 9%2C Homeobox-leucine zipper protein HOX9%2C Homeodomain transcription factor HOX9%2C HD-ZIP protein HOX9%2C HOMEODOMAIN CONTAINING PROTEIN 2;Note=Similar to Rolled leaf1.;Transcript_evidence=AK102603 (DDBJ%2C Best hit);ORF_evidence=Q9AV49 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),Lipid-binding START (IPR002913),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),MEKHLA (IPR013978),START-like domain (IPR023393);NIAS_FLcDNA=J033098N12;Oryzabase=8472;Expression=AK102603;TENOR=Os10t0480200-01;KEGG=Os10t0480200-01
Chr10	irgsp1_rep	five_prime_UTR	18085539	18085827	.	+	.	Parent=Os10t0480200-01
Chr10	irgsp1_rep	five_prime_UTR	18086324	18086386	.	+	.	Parent=Os10t0480200-01
Chr10	irgsp1_rep	CDS	18086387	18086631	.	+	0	Parent=Os10t0480200-01
Chr10	irgsp1_rep	CDS	18086842	18087001	.	+	1	Parent=Os10t0480200-01
Chr10	irgsp1_rep	CDS	18087107	18087189	.	+	0	Parent=Os10t0480200-01
Chr10	irgsp1_rep	CDS	18087300	18087390	.	+	1	Parent=Os10t0480200-01
Chr10	irgsp1_rep	CDS	18087482	18087577	.	+	0	Parent=Os10t0480200-01
Chr10	irgsp1_rep	CDS	18088072	18088185	.	+	0	Parent=Os10t0480200-01
Chr10	irgsp1_rep	CDS	18088289	18088372	.	+	0	Parent=Os10t0480200-01
Chr10	irgsp1_rep	CDS	18088460	18088615	.	+	0	Parent=Os10t0480200-01
Chr10	irgsp1_rep	CDS	18088711	18088785	.	+	0	Parent=Os10t0480200-01
Chr10	irgsp1_rep	CDS	18089285	18089391	.	+	0	Parent=Os10t0480200-01
Chr10	irgsp1_rep	CDS	18089475	18089655	.	+	1	Parent=Os10t0480200-01
Chr10	irgsp1_rep	CDS	18089799	18089987	.	+	0	Parent=Os10t0480200-01
Chr10	irgsp1_rep	CDS	18090364	18090444	.	+	0	Parent=Os10t0480200-01
Chr10	irgsp1_rep	CDS	18090588	18090722	.	+	0	Parent=Os10t0480200-01
Chr10	irgsp1_rep	CDS	18090974	18091296	.	+	0	Parent=Os10t0480200-01
Chr10	irgsp1_rep	CDS	18091470	18091575	.	+	1	Parent=Os10t0480200-01
Chr10	irgsp1_rep	CDS	18091701	18091850	.	+	0	Parent=Os10t0480200-01
Chr10	irgsp1_rep	CDS	18092001	18092147	.	+	0	Parent=Os10t0480200-01
Chr10	irgsp1_rep	three_prime_UTR	18092148	18092497	.	+	.	Parent=Os10t0480200-01
Chr10	irgsp1_rep	mRNA	18086262	18092494	.	+	.	ID=Os10t0480200-02;Name=Os10t0480200-02;Locus_id=Os10g0480200;CGSNL Gene Symbol=HOX9;CGSNL Gene Name=HOMEOBOX GENE 9;Oryzabase Gene Symbol Synonym(s)=Oshox9%2C OsHox9%2C OsHB2%2C HB2%2C OSHB2;Oryzabase Gene Name Synonym(s)=rice homeobox gene 9%2C Homeobox-leucine zipper protein HOX9%2C Homeodomain transcription factor HOX9%2C HD-ZIP protein HOX9%2C HOMEODOMAIN CONTAINING PROTEIN 2;Note=Similar to Rolled leaf1.;Transcript_evidence=AK102830 (DDBJ%2C Best hit);ORF_evidence=Q9AV49 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),Lipid-binding START (IPR002913),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),MEKHLA (IPR013978),START-like domain (IPR023393);NIAS_FLcDNA=J033109G06;Oryzabase=8472;Expression=AK102830;TENOR=Os10t0480200-02;KEGG=Os10t0480200-02
Chr10	irgsp1_rep	five_prime_UTR	18086262	18086386	.	+	.	Parent=Os10t0480200-02
Chr10	irgsp1_rep	CDS	18086387	18086631	.	+	0	Parent=Os10t0480200-02
Chr10	irgsp1_rep	CDS	18086842	18087001	.	+	1	Parent=Os10t0480200-02
Chr10	irgsp1_rep	CDS	18087107	18087189	.	+	0	Parent=Os10t0480200-02
Chr10	irgsp1_rep	CDS	18087300	18087390	.	+	1	Parent=Os10t0480200-02
Chr10	irgsp1_rep	CDS	18087482	18087577	.	+	0	Parent=Os10t0480200-02
Chr10	irgsp1_rep	CDS	18088072	18088185	.	+	0	Parent=Os10t0480200-02
Chr10	irgsp1_rep	CDS	18088289	18088372	.	+	0	Parent=Os10t0480200-02
Chr10	irgsp1_rep	CDS	18088460	18088615	.	+	0	Parent=Os10t0480200-02
Chr10	irgsp1_rep	CDS	18088711	18088785	.	+	0	Parent=Os10t0480200-02
Chr10	irgsp1_rep	CDS	18089285	18089391	.	+	0	Parent=Os10t0480200-02
Chr10	irgsp1_rep	CDS	18089475	18089655	.	+	1	Parent=Os10t0480200-02
Chr10	irgsp1_rep	CDS	18089799	18089987	.	+	0	Parent=Os10t0480200-02
Chr10	irgsp1_rep	CDS	18090364	18090444	.	+	0	Parent=Os10t0480200-02
Chr10	irgsp1_rep	CDS	18090588	18090722	.	+	0	Parent=Os10t0480200-02
Chr10	irgsp1_rep	CDS	18090974	18091296	.	+	0	Parent=Os10t0480200-02
Chr10	irgsp1_rep	CDS	18091470	18091575	.	+	1	Parent=Os10t0480200-02
Chr10	irgsp1_rep	CDS	18091701	18091850	.	+	0	Parent=Os10t0480200-02
Chr10	irgsp1_rep	CDS	18092001	18092147	.	+	0	Parent=Os10t0480200-02
Chr10	irgsp1_rep	three_prime_UTR	18092148	18092494	.	+	.	Parent=Os10t0480200-02
Chr10	irgsp1_rep	mRNA	18089867	18092415	.	+	.	ID=Os10t0480200-03;Name=Os10t0480200-03;Locus_id=Os10g0480200;CGSNL Gene Symbol=HOX9;CGSNL Gene Name=HOMEOBOX GENE 9;Oryzabase Gene Symbol Synonym(s)=Oshox9%2C OsHox9%2C OsHB2%2C HB2%2C OSHB2;Oryzabase Gene Name Synonym(s)=rice homeobox gene 9%2C Homeobox-leucine zipper protein HOX9%2C Homeodomain transcription factor HOX9%2C HD-ZIP protein HOX9%2C HOMEODOMAIN CONTAINING PROTEIN 2;Note=Similar to Homeobox-leucine zipper protein HOX9.;Transcript_evidence=AK061741 (DDBJ%2C Best hit);ORF_evidence=Q9AV49 (UniProt);InterPro=MEKHLA (IPR013978);NIAS_FLcDNA=001-038-E12;Oryzabase=8472;Expression=AK061741;TENOR=Os10t0480200-03;KEGG=Os10t0480200-03
Chr10	irgsp1_rep	five_prime_UTR	18089867	18089867	.	+	.	Parent=Os10t0480200-03
Chr10	irgsp1_rep	CDS	18089868	18089987	.	+	0	Parent=Os10t0480200-03
Chr10	irgsp1_rep	CDS	18090364	18090444	.	+	0	Parent=Os10t0480200-03
Chr10	irgsp1_rep	CDS	18090588	18090722	.	+	0	Parent=Os10t0480200-03
Chr10	irgsp1_rep	CDS	18090974	18091296	.	+	0	Parent=Os10t0480200-03
Chr10	irgsp1_rep	CDS	18091470	18091575	.	+	1	Parent=Os10t0480200-03
Chr10	irgsp1_rep	CDS	18091701	18091895	.	+	0	Parent=Os10t0480200-03
Chr10	irgsp1_rep	three_prime_UTR	18091896	18092415	.	+	.	Parent=Os10t0480200-03
Chr10	irgsp1_rep	mRNA	18086367	18092143	.	-	.	ID=Os10t0480350-00;Name=Os10t0480350-00;Locus_id=Os10g0480350;Note=Hypothetical protein.;Transcript_evidence=tplb0037d04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0480350-00
Chr10	irgsp1_rep	five_prime_UTR	18091997	18092143	.	-	.	Parent=Os10t0480350-00
Chr10	irgsp1_rep	five_prime_UTR	18091686	18091846	.	-	.	Parent=Os10t0480350-00
Chr10	irgsp1_rep	five_prime_UTR	18090956	18091378	.	-	.	Parent=Os10t0480350-00
Chr10	irgsp1_rep	five_prime_UTR	18090497	18090707	.	-	.	Parent=Os10t0480350-00
Chr10	irgsp1_rep	five_prime_UTR	18089905	18089992	.	-	.	Parent=Os10t0480350-00
Chr10	irgsp1_rep	CDS	18089775	18089904	.	-	0	Parent=Os10t0480350-00
Chr10	irgsp1_rep	CDS	18089472	18089632	.	-	2	Parent=Os10t0480350-00
Chr10	irgsp1_rep	CDS	18089377	18089388	.	-	0	Parent=Os10t0480350-00
Chr10	irgsp1_rep	three_prime_UTR	18089278	18089376	.	-	.	Parent=Os10t0480350-00
Chr10	irgsp1_rep	three_prime_UTR	18088709	18088780	.	-	.	Parent=Os10t0480350-00
Chr10	irgsp1_rep	three_prime_UTR	18088348	18088609	.	-	.	Parent=Os10t0480350-00
Chr10	irgsp1_rep	three_prime_UTR	18088093	18088170	.	-	.	Parent=Os10t0480350-00
Chr10	irgsp1_rep	three_prime_UTR	18087479	18087596	.	-	.	Parent=Os10t0480350-00
Chr10	irgsp1_rep	three_prime_UTR	18087182	18087387	.	-	.	Parent=Os10t0480350-00
Chr10	irgsp1_rep	three_prime_UTR	18086837	18087007	.	-	.	Parent=Os10t0480350-00
Chr10	irgsp1_rep	three_prime_UTR	18086367	18086626	.	-	.	Parent=Os10t0480350-00
Chr10	irgsp1_rep	mRNA	18102674	18108764	.	-	.	ID=Os10t0480500-01;Name=Os10t0480500-01;Locus_id=Os10g0480500;CGSNL Gene Symbol=DRB2;CGSNL Gene Name=DSRNA-BINDING PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsDRB2;Oryzabase Gene Name Synonym(s)=dsRNA-binding protein 2;Note=Double-stranded RNA-binding-like domain containing protein.;Transcript_evidence=AK066524 (DDBJ%2C Best hit);ORF_evidence=Q9AV50 (UniProt);GO=Biological Process: rRNA catabolic process (GO:0016075),Cellular Component: intracellular (GO:0005622),Molecular Function: RNA binding (GO:0003723),Molecular Function: double-stranded RNA binding (GO:0003725),Molecular Function: ribonuclease III activity (GO:0004525);InterPro=Double-stranded RNA-binding (IPR001159),Ribonuclease III%2C bacterial (IPR011907),Double-stranded RNA-binding-like (IPR014720);NIAS_FLcDNA=J013074I04;Oryzabase=22065;Expression=AK066524;TENOR=Os10t0480500-01;KEGG=Os10t0480500-01
Chr10	irgsp1_rep	five_prime_UTR	18108563	18108764	.	-	.	Parent=Os10t0480500-01
Chr10	irgsp1_rep	CDS	18108317	18108562	.	-	0	Parent=Os10t0480500-01
Chr10	irgsp1_rep	CDS	18105121	18105340	.	-	0	Parent=Os10t0480500-01
Chr10	irgsp1_rep	CDS	18103169	18104247	.	-	2	Parent=Os10t0480500-01
Chr10	irgsp1_rep	three_prime_UTR	18102674	18103168	.	-	.	Parent=Os10t0480500-01
Chr10	irgsp1_rep	mRNA	18120546	18121067	.	+	.	ID=Os10t0480900-00;Name=Os10t0480900-00;Locus_id=Os10g0480900;Note=Similar to H0515C11.12 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01MH9 (UniProt);GO=Molecular Function: thiamine pyrophosphate binding (GO:0030976);InterPro=Thiamine pyrophosphate enzyme%2C N-terminal TPP-binding domain (IPR012001);TENOR=Os10t0480900-00;KEGG=Os10t0480900-00 (EC:4.1.1.1)
Chr10	irgsp1_rep	CDS	18120546	18121067	.	+	0	Parent=Os10t0480900-00
Chr10	irgsp1_rep	mRNA	18129498	18130451	.	-	.	ID=Os10t0481000-00;Name=Os10t0481000-00;Locus_id=Os10g0481000;CGSNL Gene Symbol=S40-8;CGSNL Gene Name=S40 PROTEIN 8;Oryzabase Gene Symbol Synonym(s)=OsS40-8;Oryzabase Gene Name Synonym(s)=S40 protein 8;Note=Hypothetical conserved gene.;Transcript_evidence=EU971627 (DDBJ);ORF_evidence=Q01IB5 (UniProt);InterPro=Protein of unknown function DUF584 (IPR007608);Oryzabase=22078;TENOR=Os10t0481000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	18129552	18130451	.	-	0	Parent=Os10t0481000-00
Chr10	irgsp1_rep	three_prime_UTR	18129498	18129551	.	-	.	Parent=Os10t0481000-00
Chr10	irgsp1_rep	mRNA	18141088	18142764	.	+	.	ID=Os10t0481100-01;Name=Os10t0481100-01;Locus_id=Os10g0481100;CGSNL Gene Symbol=PIP2%3B10;CGSNL Gene Name=PLASMA MEMBRANE INTRINSIC PROTEIN 2%3B10;Oryzabase Gene Symbol Synonym(s)=OsPIP2%3B10%2C PIP2.10%2C PIP2-10;Oryzabase Gene Name Synonym(s)=Probable aquaporin PIP2.10%2C Probable aquaporin PIP2-10%2C Plasma membrane intrinsic protein 2-10;Note=Similar to Aquaporin (Fragment).;Transcript_evidence=AK106746 (DDBJ%2C Best hit);ORF_evidence=Q2I6J7 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Aquaporin-like (IPR023271);NIAS_FLcDNA=002-115-C02;Oryzabase=19067;TENOR=Os10t0481100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	18141088	18141155	.	+	.	Parent=Os10t0481100-01
Chr10	irgsp1_rep	CDS	18141156	18141437	.	+	0	Parent=Os10t0481100-01
Chr10	irgsp1_rep	three_prime_UTR	18141438	18141740	.	+	.	Parent=Os10t0481100-01
Chr10	irgsp1_rep	three_prime_UTR	18141829	18141969	.	+	.	Parent=Os10t0481100-01
Chr10	irgsp1_rep	three_prime_UTR	18142327	18142764	.	+	.	Parent=Os10t0481100-01
Chr10	irgsp1_rep	mRNA	18141190	18141969	.	-	.	ID=Os10t0481150-00;Name=Os10t0481150-00;Locus_id=Os10g0481150;Note=Hypothetical protein.;Transcript_evidence=FP096444 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0481150-00
Chr10	irgsp1_rep	CDS	18141807	18141969	.	-	0	Parent=Os10t0481150-00
Chr10	irgsp1_rep	CDS	18141190	18141721	.	-	2	Parent=Os10t0481150-00
Chr10	irgsp1_rep	mRNA	18144878	18145342	.	+	.	ID=Os10t0481200-00;Name=Os10t0481200-00;Locus_id=Os10g0481200;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001064877.1 (RefSeq);TENOR=Os10t0481200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	18144878	18145342	.	+	0	Parent=Os10t0481200-00
Chr10	irgsp1_rep	mRNA	18145792	18149595	.	-	.	ID=Os10t0481300-01;Name=Os10t0481300-01;Locus_id=Os10g0481300;CGSNL Gene Symbol=GSTU47;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 47;Oryzabase Gene Symbol Synonym(s)=OsGSTU47;Oryzabase Gene Name Synonym(s)=glutathione transferase U47;Note=Similar to Glutathione S-transferase%2C N-terminal domain containing protein%2C expressed.;Transcript_evidence=AK287435 (DDBJ%2C Best hit);ORF_evidence=Q7XDA6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=J043012O12;Oryzabase=9564;TENOR=Os10t0481300-01;KEGG=Os10t0481300-01
Chr10	irgsp1_rep	five_prime_UTR	18149440	18149595	.	-	.	Parent=Os10t0481300-01
Chr10	irgsp1_rep	CDS	18149170	18149439	.	-	0	Parent=Os10t0481300-01
Chr10	irgsp1_rep	CDS	18146043	18146387	.	-	0	Parent=Os10t0481300-01
Chr10	irgsp1_rep	three_prime_UTR	18145792	18146042	.	-	.	Parent=Os10t0481300-01
Chr10	irgsp1_rep	mRNA	18150730	18152862	.	-	.	ID=Os10t0481400-01;Name=Os10t0481400-01;Locus_id=Os10g0481400;Note=Similar to Zinc finger%2C C3HC4 type family protein%2C expressed.;Transcript_evidence=AK121098 (DDBJ%2C Best hit);ORF_evidence=Q7XDA5 (UniProt);NIAS_FLcDNA=J023069E11;TENOR=Os10t0481400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	18152759	18152862	.	-	.	Parent=Os10t0481400-01
Chr10	irgsp1_rep	CDS	18152738	18152758	.	-	0	Parent=Os10t0481400-01
Chr10	irgsp1_rep	CDS	18152473	18152604	.	-	0	Parent=Os10t0481400-01
Chr10	irgsp1_rep	CDS	18151072	18151185	.	-	0	Parent=Os10t0481400-01
Chr10	irgsp1_rep	three_prime_UTR	18150730	18151071	.	-	.	Parent=Os10t0481400-01
Chr10	irgsp1_rep	mRNA	18150877	18152860	.	-	.	ID=Os10t0481400-02;Name=Os10t0481400-02;Locus_id=Os10g0481400;Note=Similar to Zinc finger%2C C3HC4 type family protein%2C expressed.;Transcript_evidence=AK122183 (DDBJ%2C Best hit);ORF_evidence=Q7XDA5 (UniProt);NIAS_FLcDNA=J033150B12;Expression=AK122183;TENOR=Os10t0481400-02;KEGG=Os10t0481400-02
Chr10	irgsp1_rep	five_prime_UTR	18152638	18152860	.	-	.	Parent=Os10t0481400-02
Chr10	irgsp1_rep	CDS	18152329	18152637	.	-	0	Parent=Os10t0481400-02
Chr10	irgsp1_rep	three_prime_UTR	18150877	18152328	.	-	.	Parent=Os10t0481400-02
Chr10	irgsp1_rep	mRNA	18153642	18156878	.	-	.	ID=Os10t0481450-01;Name=Os10t0481450-01;Locus_id=Os10g0481450;Note=Similar to Zinc finger%2C C3HC4 type family protein%2C expressed.;Transcript_evidence=AK240935 (DDBJ%2C Best hit);ORF_evidence=Q7XDA5 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-CH-type (IPR011016),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J065041H23;TENOR=Os10t0481450-01;KEGG=Os10t0481450-01
Chr10	irgsp1_rep	five_prime_UTR	18156681	18156878	.	-	.	Parent=Os10t0481450-01
Chr10	irgsp1_rep	CDS	18156439	18156680	.	-	0	Parent=Os10t0481450-01
Chr10	irgsp1_rep	CDS	18155325	18155459	.	-	1	Parent=Os10t0481450-01
Chr10	irgsp1_rep	CDS	18155210	18155252	.	-	1	Parent=Os10t0481450-01
Chr10	irgsp1_rep	CDS	18154794	18154856	.	-	0	Parent=Os10t0481450-01
Chr10	irgsp1_rep	CDS	18154500	18154614	.	-	0	Parent=Os10t0481450-01
Chr10	irgsp1_rep	CDS	18153835	18153974	.	-	2	Parent=Os10t0481450-01
Chr10	irgsp1_rep	three_prime_UTR	18153642	18153834	.	-	.	Parent=Os10t0481450-01
Chr10	irgsp1_rep	mRNA	18169120	18172321	.	+	.	ID=Os10t0481500-00;Name=Os10t0481500-00;Locus_id=Os10g0481500;Note=Similar to Flotillin-like protein 1.;Transcript_evidence=AK368431 (DDBJ);ORF_evidence=Q9AV57 (UniProt);InterPro=Band 7 protein (IPR001107);TENOR=Os10t0481500-00
Chr10	irgsp1_rep	CDS	18169120	18170055	.	+	0	Parent=Os10t0481500-00
Chr10	irgsp1_rep	CDS	18171795	18172316	.	+	0	Parent=Os10t0481500-00
Chr10	irgsp1_rep	three_prime_UTR	18172317	18172321	.	+	.	Parent=Os10t0481500-00
Chr10	irgsp1_rep	mRNA	18190889	18191677	.	-	.	ID=Os10t0482000-01;Name=Os10t0482000-01;Locus_id=Os10g0482000;Note=Conserved hypothetical protein.;Transcript_evidence=AK063227 (DDBJ%2C Best hit);ORF_evidence=NP_001172970.1 (RefSeq);NIAS_FLcDNA=001-112-E12;TENOR=Os10t0482000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	18191606	18191677	.	-	.	Parent=Os10t0482000-01
Chr10	irgsp1_rep	CDS	18191429	18191605	.	-	0	Parent=Os10t0482000-01
Chr10	irgsp1_rep	three_prime_UTR	18190889	18191428	.	-	.	Parent=Os10t0482000-01
Chr10	irgsp1_rep	mRNA	18192191	18192421	.	-	.	ID=Os10t0482066-00;Name=Os10t0482066-00;Locus_id=Os10g0482066;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os10t0482066-00;KEGG=Os10t0482066-00
Chr10	irgsp1_rep	CDS	18192191	18192421	.	-	0	Parent=Os10t0482066-00
Chr10	irgsp1_rep	mRNA	18203248	18205758	.	-	.	ID=Os10t0482200-01;Name=Os10t0482200-01;Locus_id=Os10g0482200;RAP-DB Gene Symbol Synonym(s)=LTT1;RAP-DB Gene Name Synonym(s)=low-temperature tolerance 1;CGSNL Gene Symbol=LTT1;CGSNL Gene Name=LOW-TEMPERATURE TOLERANCE 1;Oryzabase Gene Symbol Synonym(s)=OsLTT1;Oryzabase Gene Name Synonym(s)=low-temperature tolerance 1;Note=Cold tolerance at the booting stage;Transcript_evidence=Inferred from literature;ORF_evidence=A0A0P0XVH5;InterPro=Protein of unknown function DUF594 (IPR007658),Domain of unknown function DUF4220 (IPR025315);Manual Curation=January 16%2C 2020;Literature_PMID=31922260;Oryzabase=23451;TENOR=Os10t0482200-00
Chr10	irgsp1_rep	CDS	18203248	18205758	.	-	0	Parent=Os10t0482200-01
Chr10	irgsp1_rep	mRNA	18214554	18217773	.	-	.	ID=Os10t0482450-00;Name=Os10t0482450-00;Locus_id=Os10g0482450;Note=Similar to Flotillin-like protein 3.;Transcript_evidence=AK368431 (DDBJ);ORF_evidence=Q8LNW6 (UniProt);InterPro=Band 7 protein (IPR001107);TENOR=Os10t0482450-00
Chr10	irgsp1_rep	CDS	18217537	18217773	.	-	0	Parent=Os10t0482450-00
Chr10	irgsp1_rep	CDS	18215514	18216224	.	-	0	Parent=Os10t0482450-00
Chr10	irgsp1_rep	CDS	18214554	18215030	.	-	0	Parent=Os10t0482450-00
Chr10	irgsp1_rep	mRNA	18225297	18227300	.	-	.	ID=Os10t0482700-00;Name=Os10t0482700-00;Locus_id=Os10g0482700;Note=Similar to Flotillin-like protein 2.;Transcript_evidence=AK368431 (DDBJ);ORF_evidence=Q8LNW4 (UniProt);InterPro=Band 7 protein (IPR001107);TENOR=Os10t0482700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	18227061	18227300	.	-	0	Parent=Os10t0482700-00
Chr10	irgsp1_rep	CDS	18226182	18226880	.	-	0	Parent=Os10t0482700-00
Chr10	irgsp1_rep	CDS	18225297	18225803	.	-	0	Parent=Os10t0482700-00
Chr10	irgsp1_rep	mRNA	18231655	18236510	.	-	.	ID=Os10t0482900-01;Name=Os10t0482900-01;Locus_id=Os10g0482900;Oryzabase Gene Symbol Synonym(s)=OsGRL19;Oryzabase Gene Name Synonym(s)=GRX-like protein 19%2C glutaredoxin-like protein 19;Note=Thioredoxin fold domain containing protein.;Transcript_evidence=AK071332 (DDBJ%2C Best hit);ORF_evidence=NP_566405.1 (RefSeq);GO=Biological Process: intracellular signal transduction (GO:0035556),Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=DEP domain (IPR000591),Glutaredoxin (IPR002109),Domain of unknown function DUF547 (IPR006869),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=J023089P20;Oryzabase=13609;Expression=AK071332;TENOR=Os10t0482900-01;KEGG=Os10t0482900-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	18236407	18236510	.	-	.	Parent=Os10t0482900-01
Chr10	irgsp1_rep	CDS	18235222	18236406	.	-	0	Parent=Os10t0482900-01
Chr10	irgsp1_rep	CDS	18233405	18233460	.	-	0	Parent=Os10t0482900-01
Chr10	irgsp1_rep	CDS	18232947	18233183	.	-	1	Parent=Os10t0482900-01
Chr10	irgsp1_rep	CDS	18232571	18232856	.	-	1	Parent=Os10t0482900-01
Chr10	irgsp1_rep	CDS	18232283	18232479	.	-	0	Parent=Os10t0482900-01
Chr10	irgsp1_rep	CDS	18231965	18232118	.	-	1	Parent=Os10t0482900-01
Chr10	irgsp1_rep	three_prime_UTR	18231655	18231964	.	-	.	Parent=Os10t0482900-01
Chr10	irgsp1_rep	mRNA	18240660	18243388	.	-	.	ID=Os10t0483000-01;Name=Os10t0483000-01;Locus_id=Os10g0483000;RAP-DB Gene Symbol Synonym(s)=Osj10gBTF3%2C BTF3a;RAP-DB Gene Name Synonym(s)=BTF3a RNA pol B%2C BTF3a RNA polymerase B;Oryzabase Gene Symbol Synonym(s)=Osj10gBTF3%2C 10gBTF3%2C BTF3a;Oryzabase Gene Name Synonym(s)=BTF3a RNA pol B%2C BTF3a RNA polymerase B%2C beta-subunit of nascent polypeptide-associated complex;Note=Basal transcription factor 3-like protein%2C Vegetative growth and reproductive development;Transcript_evidence=KF017618,AK121674;ORF_evidence=Q8LNW1;InterPro=Nascent polypeptide-associated complex NAC domain (IPR002715);NIAS_FLcDNA=J033068E07;Manual Curation=December 15%2C 2014;Literature_PMID=23147221;Oryzabase=14357;TENOR=Os10t0483000-01;KEGG=Os10t0483000-01
Chr10	irgsp1_rep	five_prime_UTR	18243310	18243388	.	-	.	Parent=Os10t0483000-01
Chr10	irgsp1_rep	CDS	18242375	18242442	.	-	0	Parent=Os10t0483000-01
Chr10	irgsp1_rep	CDS	18241704	18241852	.	-	1	Parent=Os10t0483000-01
Chr10	irgsp1_rep	CDS	18241559	18241615	.	-	2	Parent=Os10t0483000-01
Chr10	irgsp1_rep	CDS	18241246	18241284	.	-	2	Parent=Os10t0483000-01
Chr10	irgsp1_rep	CDS	18240841	18241022	.	-	2	Parent=Os10t0483000-01
Chr10	irgsp1_rep	three_prime_UTR	18240660	18240840	.	-	.	Parent=Os10t0483000-01
Chr10	irgsp1_rep	mRNA	18244613	18247351	.	-	.	ID=Os10t0483100-01;Name=Os10t0483100-01;Locus_id=Os10g0483100;Note=Conserved hypothetical protein.;Transcript_evidence=AK071436 (DDBJ%2C Best hit);ORF_evidence=A2Z8N2 (UniProt);NIAS_FLcDNA=J023093J24;Expression=AK071436;TENOR=Os10t0483100-01;KEGG=Os10t0483100-01
Chr10	irgsp1_rep	five_prime_UTR	18247101	18247351	.	-	.	Parent=Os10t0483100-01
Chr10	irgsp1_rep	five_prime_UTR	18246907	18246965	.	-	.	Parent=Os10t0483100-01
Chr10	irgsp1_rep	CDS	18246436	18246906	.	-	0	Parent=Os10t0483100-01
Chr10	irgsp1_rep	CDS	18244945	18245463	.	-	0	Parent=Os10t0483100-01
Chr10	irgsp1_rep	three_prime_UTR	18244613	18244944	.	-	.	Parent=Os10t0483100-01
Chr10	irgsp1_rep	mRNA	18258125	18262550	.	+	.	ID=Os10t0483400-01;Name=Os10t0483400-01;Locus_id=Os10g0483400;CGSNL Gene Symbol=RLCK302;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 302;Oryzabase Gene Symbol Synonym(s)=OsRLCK302;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 302;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=AK120835 (DDBJ%2C Best hit);ORF_evidence=Q2R4L1 (UniProt);InterPro=Gnk2-homologous domain (IPR002902);NIAS_FLcDNA=J023020I17;Oryzabase=18978;TENOR=Os10t0483400-01;B5toI1=Exon-intron structures and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	18258125	18258172	.	+	.	Parent=Os10t0483400-01
Chr10	irgsp1_rep	CDS	18258173	18258615	.	+	0	Parent=Os10t0483400-01
Chr10	irgsp1_rep	CDS	18259481	18259583	.	+	1	Parent=Os10t0483400-01
Chr10	irgsp1_rep	three_prime_UTR	18259584	18259606	.	+	.	Parent=Os10t0483400-01
Chr10	irgsp1_rep	three_prime_UTR	18260376	18260503	.	+	.	Parent=Os10t0483400-01
Chr10	irgsp1_rep	three_prime_UTR	18260642	18260855	.	+	.	Parent=Os10t0483400-01
Chr10	irgsp1_rep	three_prime_UTR	18261112	18261343	.	+	.	Parent=Os10t0483400-01
Chr10	irgsp1_rep	three_prime_UTR	18261413	18261563	.	+	.	Parent=Os10t0483400-01
Chr10	irgsp1_rep	three_prime_UTR	18261925	18262550	.	+	.	Parent=Os10t0483400-01
Chr10	irgsp1_rep	mRNA	18261082	18261484	.	-	.	ID=Os10t0483450-00;Name=Os10t0483450-00;Locus_id=Os10g0483450;Note=Non-protein coding transcript.;Transcript_evidence=EU949024 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0483450-00
Chr10	irgsp1_rep	exon	18261082	18261484	.	-	.	Parent=Os10t0483450-00
Chr10	irgsp1_rep	mRNA	18270328	18274523	.	+	.	ID=Os10t0483500-01;Name=Os10t0483500-01;Locus_id=Os10g0483500;CGSNL Gene Symbol=CKX3;CGSNL Gene Name=CYTOKININ OXIDASE/DEHYDROGENASE 3;Oryzabase Gene Symbol Synonym(s)=OsCKX3%2C ckx3;Oryzabase Gene Name Synonym(s)=Putative cytokinin oxidase 3%2C cytokinin oxidase 3;Note=FAD linked oxidase%2C N-terminal domain containing protein.;Transcript_evidence=AK103272 (DDBJ%2C Best hit);ORF_evidence=Q8LNV6 (UniProt);GO=Biological Process: cytokinin metabolic process (GO:0009690),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: cytokinin dehydrogenase activity (GO:0019139),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=FAD linked oxidase%2C N-terminal (IPR006094),Cytokinin dehydrogenase 1%2C FAD/cytokinin binding domain (IPR015345),FAD-linked oxidase-like%2C C-terminal (IPR016164),FAD-binding%2C type 2 (IPR016166),FAD-binding%2C type 2%2C subdomain 1 (IPR016167),FAD-linked oxidase%2C FAD-binding%2C subdomain 2 (IPR016168);NIAS_FLcDNA=J033124I10;Oryzabase=8393;Expression=AK103272;TENOR=Os10t0483500-01;KEGG=Os10t0483500-01
Chr10	irgsp1_rep	five_prime_UTR	18270328	18270607	.	+	.	Parent=Os10t0483500-01
Chr10	irgsp1_rep	CDS	18270608	18271181	.	+	0	Parent=Os10t0483500-01
Chr10	irgsp1_rep	CDS	18271362	18271489	.	+	2	Parent=Os10t0483500-01
Chr10	irgsp1_rep	CDS	18271615	18271875	.	+	0	Parent=Os10t0483500-01
Chr10	irgsp1_rep	CDS	18271955	18272217	.	+	0	Parent=Os10t0483500-01
Chr10	irgsp1_rep	CDS	18273843	18274200	.	+	1	Parent=Os10t0483500-01
Chr10	irgsp1_rep	three_prime_UTR	18274201	18274523	.	+	.	Parent=Os10t0483500-01
Chr10	irgsp1_rep	mRNA	18281126	18281584	.	+	.	ID=Os10t0483700-00;Name=Os10t0483700-00;Locus_id=Os10g0483700;Note=Conserved hypothetical protein.;Transcript_evidence=EU976210 (DDBJ);ORF_evidence=Q8LNV4 (UniProt);TENOR=Os10t0483700-00
Chr10	irgsp1_rep	CDS	18281126	18281584	.	+	0	Parent=Os10t0483700-00
Chr10	irgsp1_rep	mRNA	18285393	18285755	.	-	.	ID=Os10t0483800-00;Name=Os10t0483800-00;Locus_id=Os10g0483800;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os10t0483800-00
Chr10	irgsp1_rep	CDS	18285393	18285755	.	-	0	Parent=Os10t0483800-00
Chr10	irgsp1_rep	mRNA	18285448	18286402	.	+	.	ID=Os10t0483900-01;Name=Os10t0483900-01;Locus_id=Os10g0483900;Note=Twin arginine translocation signal%2C Tat domain containing protein.;Transcript_evidence=AK287983 (DDBJ%2C Best hit);ORF_evidence=NP_001064887.1 (RefSeq);InterPro=Twin-arginine translocation pathway%2C signal sequence (IPR006311);NIAS_FLcDNA=J075086N06;TENOR=Os10t0483900-01;KEGG=Os10t0483900-01
Chr10	irgsp1_rep	five_prime_UTR	18285448	18285564	.	+	.	Parent=Os10t0483900-01
Chr10	irgsp1_rep	CDS	18285565	18286173	.	+	0	Parent=Os10t0483900-01
Chr10	irgsp1_rep	three_prime_UTR	18286174	18286402	.	+	.	Parent=Os10t0483900-01
Chr10	irgsp1_rep	mRNA	18297933	18300228	.	-	.	ID=Os10t0484300-01;Name=Os10t0484300-01;Locus_id=Os10g0484300;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK288938 (DDBJ%2C Best hit);ORF_evidence=NP_001064888.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J090082P07;TENOR=Os10t0484300-01;KEGG=Os10t0484300-01
Chr10	irgsp1_rep	five_prime_UTR	18300120	18300228	.	-	.	Parent=Os10t0484300-01
Chr10	irgsp1_rep	CDS	18298383	18300119	.	-	0	Parent=Os10t0484300-01
Chr10	irgsp1_rep	three_prime_UTR	18298375	18298382	.	-	.	Parent=Os10t0484300-01
Chr10	irgsp1_rep	three_prime_UTR	18297933	18298216	.	-	.	Parent=Os10t0484300-01
Chr10	irgsp1_rep	mRNA	18301439	18304745	.	-	.	ID=Os10t0484400-02;Name=Os10t0484400-02;Locus_id=Os10g0484400;Note=Ribosomal protein L18/L5 domain containing protein.;Transcript_evidence=AK107329 (DDBJ%2C Best hit),AK107124 (DDBJ%2C Best hit);ORF_evidence=Q8LNU7 (UniProt);NIAS_FLcDNA=002-126-F02,002-124-B09;Expression=AK107329;TENOR=Os10t0484400-02;KEGG=Os10t0484400-02
Chr10	irgsp1_rep	five_prime_UTR	18304356	18304745	.	-	.	Parent=Os10t0484400-02
Chr10	irgsp1_rep	CDS	18303420	18304355	.	-	0	Parent=Os10t0484400-02
Chr10	irgsp1_rep	CDS	18302292	18302327	.	-	0	Parent=Os10t0484400-02
Chr10	irgsp1_rep	three_prime_UTR	18301439	18302291	.	-	.	Parent=Os10t0484400-02
Chr10	irgsp1_rep	mRNA	18311854	18314316	.	-	.	ID=Os10t0484700-01;Name=Os10t0484700-01;Locus_id=Os10g0484700;Note=Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 domain containing protein.;Transcript_evidence=AK067463 (DDBJ%2C Best hit);ORF_evidence=B6TNJ0 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferases%2C class-I%2C pyridoxal-phosphate-binding site (IPR004838),Aminotransferase%2C class I/classII (IPR004839),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J013100G18;Expression=AK067463;TENOR=Os10t0484700-01;KEGG=Os10t0484700-01
Chr10	irgsp1_rep	five_prime_UTR	18314272	18314316	.	-	.	Parent=Os10t0484700-01
Chr10	irgsp1_rep	CDS	18314090	18314271	.	-	0	Parent=Os10t0484700-01
Chr10	irgsp1_rep	CDS	18313870	18314000	.	-	1	Parent=Os10t0484700-01
Chr10	irgsp1_rep	CDS	18313681	18313766	.	-	2	Parent=Os10t0484700-01
Chr10	irgsp1_rep	CDS	18313455	18313549	.	-	0	Parent=Os10t0484700-01
Chr10	irgsp1_rep	CDS	18313203	18313299	.	-	1	Parent=Os10t0484700-01
Chr10	irgsp1_rep	CDS	18312974	18313088	.	-	0	Parent=Os10t0484700-01
Chr10	irgsp1_rep	CDS	18312727	18312881	.	-	2	Parent=Os10t0484700-01
Chr10	irgsp1_rep	CDS	18312509	18312634	.	-	0	Parent=Os10t0484700-01
Chr10	irgsp1_rep	CDS	18312097	18312348	.	-	0	Parent=Os10t0484700-01
Chr10	irgsp1_rep	three_prime_UTR	18311854	18312096	.	-	.	Parent=Os10t0484700-01
Chr10	irgsp1_rep	mRNA	18312521	18313147	.	+	.	ID=Os10t0484750-00;Name=Os10t0484750-00;Locus_id=Os10g0484750;Note=Non-protein coding transcript.;Transcript_evidence=EU950040 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0484750-00
Chr10	irgsp1_rep	exon	18312521	18312626	.	+	.	Parent=Os10t0484750-00
Chr10	irgsp1_rep	exon	18312749	18313147	.	+	.	Parent=Os10t0484750-00
Chr10	irgsp1_rep	mRNA	18316329	18318605	.	+	.	ID=Os10t0484800-01;Name=Os10t0484800-01;Locus_id=Os10g0484800;RAP-DB Gene Symbol Synonym(s)=OsLAP6%2C OsPKS1%2C OsLAP6/OsPKS1;RAP-DB Gene Name Synonym(s)=POLYKETIDE SYNTHASE 1;CGSNL Gene Symbol=LAP6;CGSNL Gene Name=LESS ADHESIVE POLLEN 6;Oryzabase Gene Symbol Synonym(s)=OsPKS1%2C PKS1%2C YY2%2C OsPKS21%2C PKS21%2C OsLAP6/OsPKS1%2C OsLAP6;Oryzabase Gene Name Synonym(s)=polyketide synthase 1%2C polyketide synthase 21%2C stilbene synthase;Note=Orthologue of Arabidopsis PKSA/LAP6%2C Regulation of pollen exine formation;Transcript_evidence=AK105510;ORF_evidence=Q7X795;GO=Biological Process: metabolic process (GO:0008152),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Thiolase-like (IPR016039),Polyketide synthase%2C type III (IPR011141),Chalcone/stilbene synthase%2C N-terminal (IPR001099),Chalcone/stilbene synthase%2C C-terminal (IPR012328);NIAS_FLcDNA=001-127-E05;Manual Curation=June 5%2C 2018;Literature_PMID=29282604,28783252;Oryzabase=13162;Expression=AK105510;TENOR=Os10t0484800-01;KEGG=Os10t0484800-01;Subcellular location=endoplasmic reticulum (GO:0005783)
Chr10	irgsp1_rep	five_prime_UTR	18316329	18316401	.	+	.	Parent=Os10t0484800-01
Chr10	irgsp1_rep	CDS	18316402	18316597	.	+	0	Parent=Os10t0484800-01
Chr10	irgsp1_rep	CDS	18317420	18318393	.	+	2	Parent=Os10t0484800-01
Chr10	irgsp1_rep	three_prime_UTR	18318394	18318605	.	+	.	Parent=Os10t0484800-01
Chr10	irgsp1_rep	mRNA	18318853	18320476	.	-	.	ID=Os10t0484900-00;Name=Os10t0484900-00;Locus_id=Os10g0484900;Note=Hypothetical conserved gene.;Transcript_evidence=tplb0043p24 (Wheat FLcDNA);ORF_evidence=Q8W361 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);TENOR=Os10t0484900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	18320452	18320476	.	-	.	Parent=Os10t0484900-00
Chr10	irgsp1_rep	CDS	18319165	18320451	.	-	0	Parent=Os10t0484900-00
Chr10	irgsp1_rep	three_prime_UTR	18318853	18319164	.	-	.	Parent=Os10t0484900-00
Chr10	irgsp1_rep	mRNA	18321124	18331773	.	-	.	ID=Os10t0485000-01;Name=Os10t0485000-01;Locus_id=Os10g0485000;Oryzabase Gene Symbol Synonym(s)=OsMed35_1%2C Med35_1;Oryzabase Gene Name Synonym(s)=Mediator 35_1;Note=FF domain containing protein.;Transcript_evidence=AK101641 (DDBJ%2C Best hit);ORF_evidence=B9G6B9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WW/Rsp5/WWP (IPR001202),FF domain (IPR002713);NIAS_FLcDNA=J033055K08;Oryzabase=20989;Expression=AK101641;TENOR=Os10t0485000-01;KEGG=Os10t0485000-01
Chr10	irgsp1_rep	five_prime_UTR	18331692	18331773	.	-	.	Parent=Os10t0485000-01
Chr10	irgsp1_rep	CDS	18331305	18331691	.	-	0	Parent=Os10t0485000-01
Chr10	irgsp1_rep	CDS	18330080	18330226	.	-	0	Parent=Os10t0485000-01
Chr10	irgsp1_rep	CDS	18329719	18329955	.	-	0	Parent=Os10t0485000-01
Chr10	irgsp1_rep	CDS	18329065	18329641	.	-	0	Parent=Os10t0485000-01
Chr10	irgsp1_rep	CDS	18328802	18328965	.	-	2	Parent=Os10t0485000-01
Chr10	irgsp1_rep	CDS	18328654	18328691	.	-	0	Parent=Os10t0485000-01
Chr10	irgsp1_rep	CDS	18327039	18327117	.	-	1	Parent=Os10t0485000-01
Chr10	irgsp1_rep	CDS	18326459	18326923	.	-	0	Parent=Os10t0485000-01
Chr10	irgsp1_rep	CDS	18326102	18326185	.	-	0	Parent=Os10t0485000-01
Chr10	irgsp1_rep	CDS	18324197	18324337	.	-	0	Parent=Os10t0485000-01
Chr10	irgsp1_rep	CDS	18323943	18324049	.	-	0	Parent=Os10t0485000-01
Chr10	irgsp1_rep	CDS	18323738	18323849	.	-	1	Parent=Os10t0485000-01
Chr10	irgsp1_rep	CDS	18322488	18322631	.	-	0	Parent=Os10t0485000-01
Chr10	irgsp1_rep	CDS	18322257	18322403	.	-	0	Parent=Os10t0485000-01
Chr10	irgsp1_rep	CDS	18322043	18322165	.	-	0	Parent=Os10t0485000-01
Chr10	irgsp1_rep	CDS	18321298	18321582	.	-	0	Parent=Os10t0485000-01
Chr10	irgsp1_rep	three_prime_UTR	18321124	18321297	.	-	.	Parent=Os10t0485000-01
Chr10	irgsp1_rep	mRNA	18332863	18336971	.	-	.	ID=Os10t0485100-01;Name=Os10t0485100-01;Locus_id=Os10g0485100;Note=Thioredoxin fold domain containing protein.;Transcript_evidence=AK063971 (DDBJ%2C Best hit);ORF_evidence=Q8W363 (UniProt);InterPro=Protein of unknown function DUF179 (IPR003774),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=001-124-B05;Expression=AK063971;TENOR=Os10t0485100-01;KEGG=Os10t0485100-01
Chr10	irgsp1_rep	five_prime_UTR	18336971	18336971	.	-	.	Parent=Os10t0485100-01
Chr10	irgsp1_rep	CDS	18335251	18336970	.	-	0	Parent=Os10t0485100-01
Chr10	irgsp1_rep	CDS	18334829	18334926	.	-	2	Parent=Os10t0485100-01
Chr10	irgsp1_rep	CDS	18334249	18334390	.	-	0	Parent=Os10t0485100-01
Chr10	irgsp1_rep	CDS	18333156	18333763	.	-	2	Parent=Os10t0485100-01
Chr10	irgsp1_rep	three_prime_UTR	18332863	18333155	.	-	.	Parent=Os10t0485100-01
Chr10	irgsp1_rep	mRNA	18332936	18336287	.	-	.	ID=Os10t0485100-02;Name=Os10t0485100-02;Locus_id=Os10g0485100;Note=Hypothetical conserved gene.;Transcript_evidence=AK101467 (DDBJ%2C Best hit);ORF_evidence=Q8W363 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454);InterPro=Protein of unknown function DUF179 (IPR003774),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766);NIAS_FLcDNA=J033040I16;Expression=AK101467;TENOR=Os10t0485100-02;KEGG=Os10t0485100-02
Chr10	irgsp1_rep	five_prime_UTR	18336287	18336287	.	-	.	Parent=Os10t0485100-02
Chr10	irgsp1_rep	CDS	18335251	18336286	.	-	0	Parent=Os10t0485100-02
Chr10	irgsp1_rep	CDS	18334829	18334926	.	-	2	Parent=Os10t0485100-02
Chr10	irgsp1_rep	CDS	18334249	18334390	.	-	0	Parent=Os10t0485100-02
Chr10	irgsp1_rep	CDS	18333156	18333763	.	-	2	Parent=Os10t0485100-02
Chr10	irgsp1_rep	three_prime_UTR	18332936	18333155	.	-	.	Parent=Os10t0485100-02
Chr10	irgsp1_rep	mRNA	18343042	18351973	.	+	.	ID=Os10t0485300-01;Name=Os10t0485300-01;Locus_id=Os10g0485300;Note=Hypothetical conserved gene.;Transcript_evidence=AK243136 (DDBJ%2C Best hit);ORF_evidence=Q8W364 (UniProt);InterPro=Protein of unknown function DUF3506 (IPR021894);NIAS_FLcDNA=J100030N14;TENOR=Os10t0485300-01;KEGG=Os10t0485300-01
Chr10	irgsp1_rep	five_prime_UTR	18343042	18343187	.	+	.	Parent=Os10t0485300-01
Chr10	irgsp1_rep	CDS	18343188	18343751	.	+	0	Parent=Os10t0485300-01
Chr10	irgsp1_rep	CDS	18344969	18345085	.	+	0	Parent=Os10t0485300-01
Chr10	irgsp1_rep	CDS	18345500	18345565	.	+	0	Parent=Os10t0485300-01
Chr10	irgsp1_rep	CDS	18346647	18346753	.	+	0	Parent=Os10t0485300-01
Chr10	irgsp1_rep	CDS	18347120	18347198	.	+	1	Parent=Os10t0485300-01
Chr10	irgsp1_rep	CDS	18348042	18348755	.	+	0	Parent=Os10t0485300-01
Chr10	irgsp1_rep	CDS	18349221	18349329	.	+	0	Parent=Os10t0485300-01
Chr10	irgsp1_rep	CDS	18349444	18349610	.	+	2	Parent=Os10t0485300-01
Chr10	irgsp1_rep	CDS	18350057	18350131	.	+	0	Parent=Os10t0485300-01
Chr10	irgsp1_rep	CDS	18350206	18350298	.	+	0	Parent=Os10t0485300-01
Chr10	irgsp1_rep	CDS	18350383	18350475	.	+	0	Parent=Os10t0485300-01
Chr10	irgsp1_rep	three_prime_UTR	18350476	18350495	.	+	.	Parent=Os10t0485300-01
Chr10	irgsp1_rep	three_prime_UTR	18351394	18351973	.	+	.	Parent=Os10t0485300-01
Chr10	irgsp1_rep	mRNA	18353569	18354435	.	-	.	ID=Os10t0485400-01;Name=Os10t0485400-01;Locus_id=Os10g0485400;Note=Hypothetical gene.;Transcript_evidence=AK100196 (DDBJ%2C Best hit);ORF_evidence=Q8H2P3 (UniProt);NIAS_FLcDNA=J023037J02;Expression=AK100196;TENOR=Os10t0485400-01;KEGG=Os10t0485400-01
Chr10	irgsp1_rep	five_prime_UTR	18353966	18354435	.	-	.	Parent=Os10t0485400-01
Chr10	irgsp1_rep	CDS	18353747	18353965	.	-	0	Parent=Os10t0485400-01
Chr10	irgsp1_rep	three_prime_UTR	18353569	18353746	.	-	.	Parent=Os10t0485400-01
Chr10	irgsp1_rep	mRNA	18357342	18359911	.	+	.	ID=Os10t0485500-01;Name=Os10t0485500-01;Locus_id=Os10g0485500;Note=Peptidoglycan-binding Lysin subgroup domain containing protein.;Transcript_evidence=AK070826 (DDBJ%2C Best hit);ORF_evidence=NP_001152252.1 (RefSeq);GO=Biological Process: cell wall macromolecule catabolic process (GO:0016998);InterPro=Peptidoglycan-binding Lysin subgroup (IPR002482),Peptidoglycan-binding lysin domain (IPR018392);NIAS_FLcDNA=J023064K14;Expression=AK070826;TENOR=Os10t0485500-01;KEGG=Os10t0485500-01
Chr10	irgsp1_rep	five_prime_UTR	18357342	18357550	.	+	.	Parent=Os10t0485500-01
Chr10	irgsp1_rep	CDS	18357551	18357814	.	+	0	Parent=Os10t0485500-01
Chr10	irgsp1_rep	CDS	18358016	18358152	.	+	0	Parent=Os10t0485500-01
Chr10	irgsp1_rep	CDS	18358790	18359495	.	+	1	Parent=Os10t0485500-01
Chr10	irgsp1_rep	three_prime_UTR	18359496	18359911	.	+	.	Parent=Os10t0485500-01
Chr10	irgsp1_rep	mRNA	18360484	18372591	.	+	.	ID=Os10t0485600-01;Name=Os10t0485600-01;Locus_id=Os10g0485600;RAP-DB Gene Symbol Synonym(s)=DCL3B%2C OsDCL3b;RAP-DB Gene Name Synonym(s)=DICER-LIKE 3B%2C Endoribonuclease Dicer homolog 3b%2C Dicer-like protein 3b;CGSNL Gene Symbol=DCL3B;CGSNL Gene Name=DICER-LIKE 3B;Oryzabase Gene Symbol Synonym(s)=OsDCL3b;Oryzabase Gene Name Synonym(s)=Endoribonuclease Dicer homolog 3b%2C Dicer-like protein 3b;Note=Dicer-like protein%2C Phased small RNA biogenesis;Transcript_evidence=Inferred from literature;ORF_evidence=Q7XD96;GO=Biological Process: RNA processing (GO:0006396),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723),Molecular Function: ribonuclease III activity (GO:0004525),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: endoribonuclease activity%2C producing 5'-phosphomonoesters (GO:0016891);InterPro=Helicase superfamily 1/2%2C ATP-binding domain (IPR014001),P-loop containing nucleoside triphosphate hydrolase (IPR027417),DEAD/DEAH box helicase domain (IPR011545),Helicase%2C C-terminal (IPR001650),Dicer dimerisation domain (IPR005034),PAZ domain (IPR003100),Ribonuclease III domain (IPR000999);Manual Curation=March 24%2C 2015;Literature_PMID=21973320,18826656;Oryzabase=8310;TENOR=Os10t0485600-00
Chr10	irgsp1_rep	CDS	18360484	18360612	.	+	0	Parent=Os10t0485600-01
Chr10	irgsp1_rep	CDS	18360689	18360865	.	+	0	Parent=Os10t0485600-01
Chr10	irgsp1_rep	CDS	18360963	18361076	.	+	0	Parent=Os10t0485600-01
Chr10	irgsp1_rep	CDS	18361567	18361701	.	+	0	Parent=Os10t0485600-01
Chr10	irgsp1_rep	CDS	18361867	18361934	.	+	0	Parent=Os10t0485600-01
Chr10	irgsp1_rep	CDS	18362679	18362745	.	+	1	Parent=Os10t0485600-01
Chr10	irgsp1_rep	CDS	18362840	18362971	.	+	0	Parent=Os10t0485600-01
Chr10	irgsp1_rep	CDS	18363100	18363252	.	+	0	Parent=Os10t0485600-01
Chr10	irgsp1_rep	CDS	18363755	18363890	.	+	0	Parent=Os10t0485600-01
Chr10	irgsp1_rep	CDS	18364519	18364624	.	+	2	Parent=Os10t0485600-01
Chr10	irgsp1_rep	CDS	18364719	18364911	.	+	1	Parent=Os10t0485600-01
Chr10	irgsp1_rep	CDS	18364984	18365144	.	+	0	Parent=Os10t0485600-01
Chr10	irgsp1_rep	CDS	18365408	18365623	.	+	1	Parent=Os10t0485600-01
Chr10	irgsp1_rep	CDS	18365913	18366178	.	+	1	Parent=Os10t0485600-01
Chr10	irgsp1_rep	CDS	18366686	18366960	.	+	2	Parent=Os10t0485600-01
Chr10	irgsp1_rep	CDS	18367052	18367560	.	+	0	Parent=Os10t0485600-01
Chr10	irgsp1_rep	CDS	18367653	18367750	.	+	1	Parent=Os10t0485600-01
Chr10	irgsp1_rep	CDS	18369154	18369362	.	+	2	Parent=Os10t0485600-01
Chr10	irgsp1_rep	CDS	18369441	18369650	.	+	0	Parent=Os10t0485600-01
Chr10	irgsp1_rep	CDS	18370078	18370554	.	+	0	Parent=Os10t0485600-01
Chr10	irgsp1_rep	CDS	18370643	18370924	.	+	0	Parent=Os10t0485600-01
Chr10	irgsp1_rep	CDS	18371091	18371417	.	+	0	Parent=Os10t0485600-01
Chr10	irgsp1_rep	CDS	18371602	18371688	.	+	0	Parent=Os10t0485600-01
Chr10	irgsp1_rep	CDS	18371770	18371845	.	+	0	Parent=Os10t0485600-01
Chr10	irgsp1_rep	CDS	18371969	18372080	.	+	2	Parent=Os10t0485600-01
Chr10	irgsp1_rep	CDS	18372185	18372383	.	+	1	Parent=Os10t0485600-01
Chr10	irgsp1_rep	three_prime_UTR	18372384	18372591	.	+	.	Parent=Os10t0485600-01
Chr10	irgsp1_rep	mRNA	18375417	18378132	.	-	.	ID=Os10t0485800-01;Name=Os10t0485800-01;Locus_id=Os10g0485800;Note=Conserved hypothetical protein.;Transcript_evidence=AK243354 (DDBJ%2C Best hit);ORF_evidence=Q8W368 (UniProt);NIAS_FLcDNA=J100061B17;TENOR=Os10t0485800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	18377855	18378132	.	-	.	Parent=Os10t0485800-01
Chr10	irgsp1_rep	CDS	18377324	18377854	.	-	0	Parent=Os10t0485800-01
Chr10	irgsp1_rep	three_prime_UTR	18375417	18377323	.	-	.	Parent=Os10t0485800-01
Chr10	irgsp1_rep	mRNA	18386542	18390266	.	+	.	ID=Os10t0486000-01;Name=Os10t0486000-01;Locus_id=Os10g0486000;CGSNL Gene Symbol=CYP86A7-3;CGSNL Gene Name=P-450 86A7-3;Oryzabase Gene Symbol Synonym(s)=CYP86A7-3%2C OsCYP86A7-3;Oryzabase Gene Name Synonym(s)=CytoChrome P450 86A7-3;Note=Metal-dependent phosphohydrolase%2C HD region domain containing protein.;Transcript_evidence=AK070384 (DDBJ%2C Best hit);ORF_evidence=B6SZF0 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphoric diester hydrolase activity (GO:0008081),Molecular Function: metal ion binding (GO:0046872);InterPro=Metal-dependent phosphohydrolase%2C HD domain (IPR003607),Metal-dependent phosphohydrolase%2C HD subdomain (IPR006674),HD domain (IPR023279);NIAS_FLcDNA=J023052E08;Oryzabase=18138;Expression=AK070384;TENOR=Os10t0486000-01;KEGG=Os10t0486000-01
Chr10	irgsp1_rep	five_prime_UTR	18386542	18386612	.	+	.	Parent=Os10t0486000-01
Chr10	irgsp1_rep	CDS	18386613	18386774	.	+	0	Parent=Os10t0486000-01
Chr10	irgsp1_rep	CDS	18386865	18386895	.	+	0	Parent=Os10t0486000-01
Chr10	irgsp1_rep	CDS	18386987	18387005	.	+	2	Parent=Os10t0486000-01
Chr10	irgsp1_rep	CDS	18388086	18388186	.	+	1	Parent=Os10t0486000-01
Chr10	irgsp1_rep	CDS	18388432	18388529	.	+	2	Parent=Os10t0486000-01
Chr10	irgsp1_rep	CDS	18389296	18389472	.	+	0	Parent=Os10t0486000-01
Chr10	irgsp1_rep	CDS	18389917	18390003	.	+	0	Parent=Os10t0486000-01
Chr10	irgsp1_rep	three_prime_UTR	18390004	18390266	.	+	.	Parent=Os10t0486000-01
Chr10	irgsp1_rep	mRNA	18386542	18389800	.	+	.	ID=Os10t0486000-02;Name=Os10t0486000-02;Locus_id=Os10g0486000;CGSNL Gene Symbol=CYP86A7-3;CGSNL Gene Name=P-450 86A7-3;Oryzabase Gene Symbol Synonym(s)=CYP86A7-3%2C OsCYP86A7-3;Oryzabase Gene Name Synonym(s)=CytoChrome P450 86A7-3;Note=Similar to metal-dependent phosphohydrolase%2C HD subdomain.;Transcript_evidence=AK106675 (DDBJ%2C Best hit);ORF_evidence=B6SZF0 (UniProt);GO=Molecular Function: phosphoric diester hydrolase activity (GO:0008081),Molecular Function: metal ion binding (GO:0046872);InterPro=Metal-dependent phosphohydrolase%2C HD subdomain (IPR006674);NIAS_FLcDNA=002-114-A07;Oryzabase=18138;Expression=AK106675;TENOR=Os10t0486000-02;KEGG=Os10t0486000-02
Chr10	irgsp1_rep	five_prime_UTR	18386542	18386612	.	+	.	Parent=Os10t0486000-02
Chr10	irgsp1_rep	CDS	18386613	18386774	.	+	0	Parent=Os10t0486000-02
Chr10	irgsp1_rep	CDS	18386865	18386895	.	+	0	Parent=Os10t0486000-02
Chr10	irgsp1_rep	CDS	18388086	18388105	.	+	2	Parent=Os10t0486000-02
Chr10	irgsp1_rep	three_prime_UTR	18388106	18388186	.	+	.	Parent=Os10t0486000-02
Chr10	irgsp1_rep	three_prime_UTR	18388432	18389800	.	+	.	Parent=Os10t0486000-02
Chr10	irgsp1_rep	mRNA	18388459	18391287	.	+	.	ID=Os10t0486000-03;Name=Os10t0486000-03;Locus_id=Os10g0486000;CGSNL Gene Symbol=CYP86A7-3;CGSNL Gene Name=P-450 86A7-3;Oryzabase Gene Symbol Synonym(s)=CYP86A7-3%2C OsCYP86A7-3;Oryzabase Gene Name Synonym(s)=CytoChrome P450 86A7-3;Note=Similar to metal-dependent phosphohydrolase%2C HD subdomain.;Transcript_evidence=AK109052 (DDBJ%2C Best hit);ORF_evidence=B6SZF0 (UniProt);InterPro=HD domain (IPR023279);NIAS_FLcDNA=002-154-E06;Oryzabase=18138;Expression=AK109052;TENOR=Os10t0486000-03;KEGG=Os10t0486000-03
Chr10	irgsp1_rep	five_prime_UTR	18388459	18388460	.	+	.	Parent=Os10t0486000-03
Chr10	irgsp1_rep	CDS	18388461	18388529	.	+	0	Parent=Os10t0486000-03
Chr10	irgsp1_rep	CDS	18389296	18389472	.	+	0	Parent=Os10t0486000-03
Chr10	irgsp1_rep	CDS	18389917	18390003	.	+	0	Parent=Os10t0486000-03
Chr10	irgsp1_rep	three_prime_UTR	18390004	18390195	.	+	.	Parent=Os10t0486000-03
Chr10	irgsp1_rep	three_prime_UTR	18390367	18391287	.	+	.	Parent=Os10t0486000-03
Chr10	irgsp1_rep	mRNA	18390302	18394392	.	-	.	ID=Os10t0486100-00;Name=Os10t0486100-00;Locus_id=Os10g0486100;Note=CytoChrome P450-like protein (CYP86B1).;Transcript_evidence=CT831341 (DDBJ%2C Best hit);ORF_evidence=Q7XD91 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);Oryzabase=22504;TENOR=Os10t0486100-00;KEGG=Os10t0486100-00
Chr10	irgsp1_rep	five_prime_UTR	18394293	18394392	.	-	.	Parent=Os10t0486100-00
Chr10	irgsp1_rep	CDS	18392991	18394292	.	-	0	Parent=Os10t0486100-00
Chr10	irgsp1_rep	CDS	18390608	18390988	.	-	0	Parent=Os10t0486100-00
Chr10	irgsp1_rep	three_prime_UTR	18390302	18390607	.	-	.	Parent=Os10t0486100-00
Chr10	irgsp1_rep	mRNA	18402218	18403179	.	+	.	ID=Os10t0486200-00;Name=Os10t0486200-00;Locus_id=Os10g0486200;Note=Similar to Plastidic phosphate translocator-like protein1.;Transcript_evidence=tplb0009j14 (Wheat FLcDNA);ORF_evidence=NP_001159001.1 (RefSeq);TENOR=Os10t0486200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	18402218	18403177	.	+	0	Parent=Os10t0486200-00
Chr10	irgsp1_rep	three_prime_UTR	18403178	18403179	.	+	.	Parent=Os10t0486200-00
Chr10	irgsp1_rep	mRNA	18403982	18404841	.	-	.	ID=Os10t0486300-00;Name=Os10t0486300-00;Locus_id=Os10g0486300;Note=Hypothetical conserved gene.;Transcript_evidence=CT835802 (DDBJ%2C Best hit);ORF_evidence=A3C5W8 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C U1-type (IPR003604),Zinc finger%2C C2H2-like (IPR015880);TENOR=Os10t0486300-00;KEGG=Os10t0486300-00
Chr10	irgsp1_rep	five_prime_UTR	18404841	18404841	.	-	.	Parent=Os10t0486300-00
Chr10	irgsp1_rep	CDS	18404253	18404840	.	-	0	Parent=Os10t0486300-00
Chr10	irgsp1_rep	three_prime_UTR	18403982	18404252	.	-	.	Parent=Os10t0486300-00
Chr10	irgsp1_rep	mRNA	18411516	18414285	.	+	.	ID=Os10t0486600-01;Name=Os10t0486600-01;Locus_id=Os10g0486600;RAP-DB Gene Symbol Synonym(s)=OsDim1;RAP-DB Gene Name Synonym(s)=Defective Entry into Mitosis 1;CGSNL Gene Symbol=DIM1;CGSNL Gene Name=DEFECTIVE ENTRY INTO MITOSIS 1;Oryzabase Gene Symbol Synonym(s)=OsDim1;Oryzabase Gene Name Synonym(s)=Defective Entry into Mitosis 1;Note=Dim1 homolog%2C Member of the thioredoxin (TRX) superfamily%2C Early seedling development%2C Pollen tube elongation;Transcript_evidence=AK063786,AK122085;ORF_evidence=Q7X873;GO=Biological Process: mRNA splicing%2C via spliceosome (GO:0000398),Cellular Component: U4/U6 x U5 tri-snRNP complex (GO:0046540);InterPro=Thioredoxin-like superfamily (IPR036249),Dim1 family (IPR004123);NIAS_FLcDNA=001-121-D12,J033122K22;Manual Curation=December 9%2C 2019;Literature_PMID=31811256;Oryzabase=23440;TENOR=Os10t0486600-01;Subcellular location=nucleus (GO:0005634)
Chr10	irgsp1_rep	five_prime_UTR	18411516	18411612	.	+	.	Parent=Os10t0486600-01
Chr10	irgsp1_rep	CDS	18411613	18411732	.	+	0	Parent=Os10t0486600-01
Chr10	irgsp1_rep	CDS	18413709	18414017	.	+	0	Parent=Os10t0486600-01
Chr10	irgsp1_rep	three_prime_UTR	18414018	18414285	.	+	.	Parent=Os10t0486600-01
Chr10	irgsp1_rep	mRNA	18420721	18425369	.	+	.	ID=Os10t0486900-01;Name=Os10t0486900-01;Locus_id=Os10g0486900;RAP-DB Gene Symbol Synonym(s)=OsTPR1;RAP-DB Gene Name Synonym(s)=tetratricopeptide repeat protein 1;CGSNL Gene Symbol=TPR1;CGSNL Gene Name=TETRATRICOPEPTIDE REPEAT PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsTPR1;Oryzabase Gene Name Synonym(s)=tetratricopeptide repeat protein 1;Note=Tetratricopeptide repeat protein%2C Blast disease resistance;Transcript_evidence=AK063937;ORF_evidence=Q7XD86;GO=Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical domain superfamily (IPR011990),Tetratricopeptide repeat-containing domain (IPR013026),Tetratricopeptide repeat (IPR019734),Tetratricopeptide repeat 1 (IPR001440),Tetratricopeptide repeat 2 (IPR013105);NIAS_FLcDNA=001-123-D11;Manual Curation=October 11%2C 2019;Literature_PMID=30610168;Oryzabase=23007;Expression=AK063937;TENOR=Os10t0486900-01;KEGG=Os10t0486900-01;Subcellular location=plasma membrane (GO:0005886)
Chr10	irgsp1_rep	five_prime_UTR	18420721	18420908	.	+	.	Parent=Os10t0486900-01
Chr10	irgsp1_rep	CDS	18420909	18421082	.	+	0	Parent=Os10t0486900-01
Chr10	irgsp1_rep	CDS	18423599	18423778	.	+	0	Parent=Os10t0486900-01
Chr10	irgsp1_rep	CDS	18424245	18424371	.	+	0	Parent=Os10t0486900-01
Chr10	irgsp1_rep	CDS	18424508	18424621	.	+	2	Parent=Os10t0486900-01
Chr10	irgsp1_rep	CDS	18424975	18425090	.	+	2	Parent=Os10t0486900-01
Chr10	irgsp1_rep	three_prime_UTR	18425091	18425369	.	+	.	Parent=Os10t0486900-01
Chr10	irgsp1_rep	mRNA	18420889	18425465	.	-	.	ID=Os10t0486916-00;Name=Os10t0486916-00;Locus_id=Os10g0486916;Note=Hypothetical protein.;Transcript_evidence=tplb0039d12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0486916-00
Chr10	irgsp1_rep	five_prime_UTR	18424973	18425465	.	-	.	Parent=Os10t0486916-00
Chr10	irgsp1_rep	five_prime_UTR	18424507	18424619	.	-	.	Parent=Os10t0486916-00
Chr10	irgsp1_rep	five_prime_UTR	18424233	18424370	.	-	.	Parent=Os10t0486916-00
Chr10	irgsp1_rep	five_prime_UTR	18423749	18423768	.	-	.	Parent=Os10t0486916-00
Chr10	irgsp1_rep	CDS	18423590	18423748	.	-	0	Parent=Os10t0486916-00
Chr10	irgsp1_rep	CDS	18420889	18421073	.	-	0	Parent=Os10t0486916-00
Chr10	irgsp1_rep	mRNA	18421852	18422136	.	+	.	ID=Os10t0486932-00;Name=Os10t0486932-00;Locus_id=Os10g0486932;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8W378 (UniProt);TENOR=Os10t0486932-00
Chr10	irgsp1_rep	CDS	18421852	18422136	.	+	0	Parent=Os10t0486932-00
Chr10	irgsp1_rep	mRNA	18432683	18433484	.	+	.	ID=Os10t0487200-00;Name=Os10t0487200-00;Locus_id=Os10g0487200;Note=Hypothetical conserved gene.;Transcript_evidence=EU971514 (DDBJ);ORF_evidence=NP_001176215.1 (RefSeq);TENOR=Os10t0487200-00;KEGG=Os10t0487200-00
Chr10	irgsp1_rep	CDS	18432683	18433220	.	+	0	Parent=Os10t0487200-00
Chr10	irgsp1_rep	CDS	18433294	18433484	.	+	2	Parent=Os10t0487200-00
Chr10	irgsp1_rep	mRNA	18434389	18438275	.	+	.	ID=Os10t0487300-01;Name=Os10t0487300-01;Locus_id=Os10g0487300;Oryzabase Gene Symbol Synonym(s)=NBS1;Oryzabase Gene Name Synonym(s)=Nijmegen breakage syndrome 1;Note=Forkhead-associated domain containing protein.;Transcript_evidence=AK069561 (DDBJ%2C Best hit);ORF_evidence=B7UCQ8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Forkhead-associated (FHA) domain (IPR000253),SMAD/FHA domain (IPR008984);NIAS_FLcDNA=J023022F23;Oryzabase=21287;Expression=AK069561;TENOR=Os10t0487300-01;KEGG=Os10t0487300-01
Chr10	irgsp1_rep	five_prime_UTR	18434389	18434535	.	+	.	Parent=Os10t0487300-01
Chr10	irgsp1_rep	CDS	18434536	18434572	.	+	0	Parent=Os10t0487300-01
Chr10	irgsp1_rep	CDS	18434672	18434725	.	+	2	Parent=Os10t0487300-01
Chr10	irgsp1_rep	CDS	18435109	18435367	.	+	2	Parent=Os10t0487300-01
Chr10	irgsp1_rep	CDS	18435577	18435665	.	+	1	Parent=Os10t0487300-01
Chr10	irgsp1_rep	CDS	18435826	18435956	.	+	2	Parent=Os10t0487300-01
Chr10	irgsp1_rep	CDS	18436081	18436127	.	+	0	Parent=Os10t0487300-01
Chr10	irgsp1_rep	CDS	18436210	18436318	.	+	1	Parent=Os10t0487300-01
Chr10	irgsp1_rep	CDS	18436398	18436484	.	+	0	Parent=Os10t0487300-01
Chr10	irgsp1_rep	CDS	18436702	18436873	.	+	0	Parent=Os10t0487300-01
Chr10	irgsp1_rep	CDS	18437018	18437490	.	+	2	Parent=Os10t0487300-01
Chr10	irgsp1_rep	CDS	18437583	18437644	.	+	0	Parent=Os10t0487300-01
Chr10	irgsp1_rep	CDS	18437718	18437820	.	+	1	Parent=Os10t0487300-01
Chr10	irgsp1_rep	CDS	18437907	18437966	.	+	0	Parent=Os10t0487300-01
Chr10	irgsp1_rep	three_prime_UTR	18437967	18438275	.	+	.	Parent=Os10t0487300-01
Chr10	irgsp1_rep	mRNA	18438792	18442388	.	-	.	ID=Os10t0487400-01;Name=Os10t0487400-01;Locus_id=Os10g0487400;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK064407 (DDBJ%2C Best hit);ORF_evidence=Q7XD81 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=002-108-H11;TENOR=Os10t0487400-01
Chr10	irgsp1_rep	five_prime_UTR	18442315	18442388	.	-	.	Parent=Os10t0487400-01
Chr10	irgsp1_rep	CDS	18441202	18442314	.	-	0	Parent=Os10t0487400-01
Chr10	irgsp1_rep	three_prime_UTR	18441178	18441201	.	-	.	Parent=Os10t0487400-01
Chr10	irgsp1_rep	three_prime_UTR	18438792	18439054	.	-	.	Parent=Os10t0487400-01
Chr10	irgsp1_rep	mRNA	18438797	18442357	.	-	.	ID=Os10t0487400-02;Name=Os10t0487400-02;Locus_id=Os10g0487400;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK102471 (DDBJ%2C Best hit);ORF_evidence=NP_001152117.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J033094G14;TENOR=Os10t0487400-02
Chr10	irgsp1_rep	five_prime_UTR	18442315	18442357	.	-	.	Parent=Os10t0487400-02
Chr10	irgsp1_rep	CDS	18441202	18442314	.	-	0	Parent=Os10t0487400-02
Chr10	irgsp1_rep	three_prime_UTR	18441178	18441201	.	-	.	Parent=Os10t0487400-02
Chr10	irgsp1_rep	three_prime_UTR	18438797	18439054	.	-	.	Parent=Os10t0487400-02
Chr10	irgsp1_rep	mRNA	18438808	18442146	.	-	.	ID=Os10t0487400-03;Name=Os10t0487400-03;Locus_id=Os10g0487400;Note=Similar to Zinc finger%2C C3HC4 type family protein%2C expressed.;Transcript_evidence=AK073407 (DDBJ%2C Best hit);ORF_evidence=Q7XD81 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J033041L15;TENOR=Os10t0487400-03
Chr10	irgsp1_rep	five_prime_UTR	18442117	18442146	.	-	.	Parent=Os10t0487400-03
Chr10	irgsp1_rep	CDS	18441202	18442116	.	-	0	Parent=Os10t0487400-03
Chr10	irgsp1_rep	three_prime_UTR	18441178	18441201	.	-	.	Parent=Os10t0487400-03
Chr10	irgsp1_rep	three_prime_UTR	18438808	18439054	.	-	.	Parent=Os10t0487400-03
Chr10	irgsp1_rep	mRNA	18446071	18449603	.	+	.	ID=Os10t0487500-01;Name=Os10t0487500-01;Locus_id=Os10g0487500;Note=Conserved hypothetical protein.;Transcript_evidence=AK109038 (DDBJ%2C Best hit);ORF_evidence=A3C5X4 (UniProt);NIAS_FLcDNA=002-154-C11;Expression=AK109038;TENOR=Os10t0487500-01;KEGG=Os10t0487500-01
Chr10	irgsp1_rep	five_prime_UTR	18446071	18446150	.	+	.	Parent=Os10t0487500-01
Chr10	irgsp1_rep	CDS	18446151	18446478	.	+	0	Parent=Os10t0487500-01
Chr10	irgsp1_rep	CDS	18446863	18447086	.	+	2	Parent=Os10t0487500-01
Chr10	irgsp1_rep	CDS	18448928	18449521	.	+	0	Parent=Os10t0487500-01
Chr10	irgsp1_rep	three_prime_UTR	18449522	18449603	.	+	.	Parent=Os10t0487500-01
Chr10	irgsp1_rep	mRNA	18451085	18454375	.	+	.	ID=Os10t0487600-01;Name=Os10t0487600-01;Locus_id=Os10g0487600;Note=Conserved hypothetical protein.;Transcript_evidence=AK061153 (DDBJ%2C Best hit),AK059738 (DDBJ%2C Best hit),AK099163 (DDBJ%2C Best hit);ORF_evidence=A2Z8R0 (UniProt);NIAS_FLcDNA=006-208-F02,006-202-E12,J023067B14;TENOR=Os10t0487600-01
Chr10	irgsp1_rep	five_prime_UTR	18451085	18451190	.	+	.	Parent=Os10t0487600-01
Chr10	irgsp1_rep	five_prime_UTR	18451366	18451389	.	+	.	Parent=Os10t0487600-01
Chr10	irgsp1_rep	CDS	18451390	18451609	.	+	0	Parent=Os10t0487600-01
Chr10	irgsp1_rep	CDS	18452077	18452297	.	+	2	Parent=Os10t0487600-01
Chr10	irgsp1_rep	CDS	18453431	18454045	.	+	0	Parent=Os10t0487600-01
Chr10	irgsp1_rep	three_prime_UTR	18454046	18454375	.	+	.	Parent=Os10t0487600-01
Chr10	irgsp1_rep	mRNA	18451093	18452610	.	+	.	ID=Os10t0487600-02;Name=Os10t0487600-02;Locus_id=Os10g0487600;Note=Hypothetical conserved gene.;Transcript_evidence=AK111375 (DDBJ%2C Best hit);ORF_evidence=Q109I1 (UniProt);NIAS_FLcDNA=002-182-A10;Expression=AK111375;TENOR=Os10t0487600-02;KEGG=Os10t0487600-02
Chr10	irgsp1_rep	five_prime_UTR	18451093	18451190	.	+	.	Parent=Os10t0487600-02
Chr10	irgsp1_rep	five_prime_UTR	18451366	18451389	.	+	.	Parent=Os10t0487600-02
Chr10	irgsp1_rep	CDS	18451390	18451609	.	+	0	Parent=Os10t0487600-02
Chr10	irgsp1_rep	CDS	18452077	18452345	.	+	2	Parent=Os10t0487600-02
Chr10	irgsp1_rep	three_prime_UTR	18452346	18452610	.	+	.	Parent=Os10t0487600-02
Chr10	irgsp1_rep	mRNA	18471175	18472999	.	+	.	ID=Os10t0487900-01;Name=Os10t0487900-01;Locus_id=Os10g0487900;Note=Conserved hypothetical protein.;Transcript_evidence=AK109184 (DDBJ%2C Best hit);ORF_evidence=Q8W5I5 (UniProt);NIAS_FLcDNA=002-156-A07;TENOR=Os10t0487900-01
Chr10	irgsp1_rep	five_prime_UTR	18471175	18471288	.	+	.	Parent=Os10t0487900-01
Chr10	irgsp1_rep	five_prime_UTR	18472522	18472538	.	+	.	Parent=Os10t0487900-01
Chr10	irgsp1_rep	CDS	18472539	18472999	.	+	0	Parent=Os10t0487900-01
Chr10	irgsp1_rep	mRNA	18475042	18484780	.	+	.	ID=Os10t0488100-01;Name=Os10t0488100-01;Locus_id=Os10g0488100;Note=Similar to prefoldin subunit 5.;Transcript_evidence=AK064048 (DDBJ%2C Best hit);ORF_evidence=B6TVU2 (UniProt);GO=Biological Process: protein folding (GO:0006457),Cellular Component: prefoldin complex (GO:0016272),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Prefoldin subunit (IPR004127),Prefoldin (IPR009053),Prefoldin alpha subunit (IPR011599);NIAS_FLcDNA=001-125-D11;Expression=AK064048;TENOR=Os10t0488100-01;KEGG=Os10t0488100-01
Chr10	irgsp1_rep	five_prime_UTR	18475042	18475146	.	+	.	Parent=Os10t0488100-01
Chr10	irgsp1_rep	CDS	18475147	18475325	.	+	0	Parent=Os10t0488100-01
Chr10	irgsp1_rep	CDS	18475430	18475535	.	+	1	Parent=Os10t0488100-01
Chr10	irgsp1_rep	CDS	18483310	18483387	.	+	0	Parent=Os10t0488100-01
Chr10	irgsp1_rep	CDS	18484330	18484419	.	+	0	Parent=Os10t0488100-01
Chr10	irgsp1_rep	three_prime_UTR	18484420	18484780	.	+	.	Parent=Os10t0488100-01
Chr10	irgsp1_rep	mRNA	18475430	18484759	.	+	.	ID=Os10t0488100-02;Name=Os10t0488100-02;Locus_id=Os10g0488100;Note=Similar to Prefoldin subunit 5 (C-myc binding protein Mm-1) (Myc modulator 1).;Transcript_evidence=AK102742 (DDBJ%2C Best hit);ORF_evidence=A6N0N5 (UniProt);GO=Biological Process: protein folding (GO:0006457),Cellular Component: prefoldin complex (GO:0016272),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Prefoldin subunit (IPR004127),Prefoldin (IPR009053),Prefoldin alpha subunit (IPR011599);NIAS_FLcDNA=J033106G17;Expression=AK102742;TENOR=Os10t0488100-02;KEGG=Os10t0488100-02
Chr10	irgsp1_rep	five_prime_UTR	18475430	18475430	.	+	.	Parent=Os10t0488100-02
Chr10	irgsp1_rep	CDS	18475431	18475535	.	+	0	Parent=Os10t0488100-02
Chr10	irgsp1_rep	CDS	18483310	18483399	.	+	0	Parent=Os10t0488100-02
Chr10	irgsp1_rep	three_prime_UTR	18483400	18484759	.	+	.	Parent=Os10t0488100-02
Chr10	irgsp1_rep	mRNA	18486477	18496730	.	+	.	ID=Os10t0488300-01;Name=Os10t0488300-01;Locus_id=Os10g0488300;Note=Vps52/Sac2 family protein.;Transcript_evidence=AK100635 (DDBJ%2C Best hit);ORF_evidence=NP_565015.1 (RefSeq);InterPro=Vps52/Sac2 (IPR007258);NIAS_FLcDNA=J023110C18;Expression=AK100635;TENOR=Os10t0488300-01;KEGG=Os10t0488300-01
Chr10	irgsp1_rep	five_prime_UTR	18486477	18486614	.	+	.	Parent=Os10t0488300-01
Chr10	irgsp1_rep	five_prime_UTR	18486888	18486904	.	+	.	Parent=Os10t0488300-01
Chr10	irgsp1_rep	CDS	18486905	18486978	.	+	0	Parent=Os10t0488300-01
Chr10	irgsp1_rep	CDS	18487300	18487357	.	+	1	Parent=Os10t0488300-01
Chr10	irgsp1_rep	CDS	18487794	18487889	.	+	0	Parent=Os10t0488300-01
Chr10	irgsp1_rep	CDS	18488155	18488256	.	+	0	Parent=Os10t0488300-01
Chr10	irgsp1_rep	CDS	18488785	18488868	.	+	0	Parent=Os10t0488300-01
Chr10	irgsp1_rep	CDS	18489485	18489565	.	+	0	Parent=Os10t0488300-01
Chr10	irgsp1_rep	CDS	18490109	18490252	.	+	0	Parent=Os10t0488300-01
Chr10	irgsp1_rep	CDS	18490399	18490490	.	+	0	Parent=Os10t0488300-01
Chr10	irgsp1_rep	CDS	18491179	18491260	.	+	1	Parent=Os10t0488300-01
Chr10	irgsp1_rep	CDS	18491999	18492181	.	+	0	Parent=Os10t0488300-01
Chr10	irgsp1_rep	CDS	18492541	18492656	.	+	0	Parent=Os10t0488300-01
Chr10	irgsp1_rep	CDS	18492736	18492794	.	+	1	Parent=Os10t0488300-01
Chr10	irgsp1_rep	CDS	18493371	18493471	.	+	2	Parent=Os10t0488300-01
Chr10	irgsp1_rep	CDS	18494231	18494281	.	+	0	Parent=Os10t0488300-01
Chr10	irgsp1_rep	CDS	18494369	18494548	.	+	0	Parent=Os10t0488300-01
Chr10	irgsp1_rep	CDS	18495493	18495627	.	+	0	Parent=Os10t0488300-01
Chr10	irgsp1_rep	CDS	18495709	18495783	.	+	0	Parent=Os10t0488300-01
Chr10	irgsp1_rep	CDS	18496071	18496128	.	+	0	Parent=Os10t0488300-01
Chr10	irgsp1_rep	CDS	18496216	18496517	.	+	2	Parent=Os10t0488300-01
Chr10	irgsp1_rep	three_prime_UTR	18496518	18496730	.	+	.	Parent=Os10t0488300-01
Chr10	irgsp1_rep	mRNA	18505564	18506412	.	+	.	ID=Os10t0488400-01;Name=Os10t0488400-01;Locus_id=Os10g0488400;Note=Protein of unknown function DUF761%2C plant domain containing protein.;Transcript_evidence=AK108465 (DDBJ%2C Best hit);ORF_evidence=Q8W5I9 (UniProt);InterPro=Protein of unknown function DUF761%2C plant (IPR008480);NIAS_FLcDNA=002-143-D12;Expression=AK108465;TENOR=Os10t0488400-01;KEGG=Os10t0488400-01
Chr10	irgsp1_rep	CDS	18505564	18506076	.	+	0	Parent=Os10t0488400-01
Chr10	irgsp1_rep	three_prime_UTR	18506077	18506412	.	+	.	Parent=Os10t0488400-01
Chr10	irgsp1_rep	mRNA	18532794	18539779	.	+	.	ID=Os10t0488800-01;Name=Os10t0488800-01;Locus_id=Os10g0488800;Oryzabase Gene Symbol Synonym(s)=OSMYOVIIIB%2C OsMyoVIIIB;Oryzabase Gene Name Synonym(s)=myosin VIIIB%2C Myosin class VIII B;Note=Myosin head%2C motor region domain containing protein.;Transcript_evidence=AK102087 (DDBJ%2C Best hit);ORF_evidence=Q337J0 (UniProt);GO=Cellular Component: myosin complex (GO:0016459),Molecular Function: motor activity (GO:0003774),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=IQ motif%2C EF-hand binding site (IPR000048),Myosin head%2C motor domain (IPR001609);NIAS_FLcDNA=J033082N17;Oryzabase=16004;Expression=AK102087;TENOR=Os10t0488800-01;KEGG=Os10t0488800-01
Chr10	irgsp1_rep	five_prime_UTR	18532794	18532795	.	+	.	Parent=Os10t0488800-01
Chr10	irgsp1_rep	CDS	18532796	18532886	.	+	0	Parent=Os10t0488800-01
Chr10	irgsp1_rep	CDS	18532974	18533001	.	+	2	Parent=Os10t0488800-01
Chr10	irgsp1_rep	CDS	18533637	18533802	.	+	1	Parent=Os10t0488800-01
Chr10	irgsp1_rep	CDS	18533882	18533945	.	+	0	Parent=Os10t0488800-01
Chr10	irgsp1_rep	CDS	18534060	18534073	.	+	2	Parent=Os10t0488800-01
Chr10	irgsp1_rep	CDS	18534173	18534257	.	+	0	Parent=Os10t0488800-01
Chr10	irgsp1_rep	CDS	18534501	18534604	.	+	2	Parent=Os10t0488800-01
Chr10	irgsp1_rep	CDS	18534753	18534891	.	+	0	Parent=Os10t0488800-01
Chr10	irgsp1_rep	CDS	18535295	18535413	.	+	2	Parent=Os10t0488800-01
Chr10	irgsp1_rep	CDS	18535514	18535666	.	+	0	Parent=Os10t0488800-01
Chr10	irgsp1_rep	CDS	18535746	18535835	.	+	0	Parent=Os10t0488800-01
Chr10	irgsp1_rep	CDS	18536133	18536210	.	+	0	Parent=Os10t0488800-01
Chr10	irgsp1_rep	CDS	18536852	18537010	.	+	0	Parent=Os10t0488800-01
Chr10	irgsp1_rep	CDS	18537095	18537298	.	+	0	Parent=Os10t0488800-01
Chr10	irgsp1_rep	CDS	18537390	18537595	.	+	0	Parent=Os10t0488800-01
Chr10	irgsp1_rep	CDS	18537676	18537811	.	+	1	Parent=Os10t0488800-01
Chr10	irgsp1_rep	CDS	18538040	18538169	.	+	0	Parent=Os10t0488800-01
Chr10	irgsp1_rep	CDS	18538268	18538414	.	+	2	Parent=Os10t0488800-01
Chr10	irgsp1_rep	CDS	18538510	18538589	.	+	2	Parent=Os10t0488800-01
Chr10	irgsp1_rep	CDS	18538750	18539409	.	+	0	Parent=Os10t0488800-01
Chr10	irgsp1_rep	three_prime_UTR	18539410	18539779	.	+	.	Parent=Os10t0488800-01
Chr10	irgsp1_rep	mRNA	18535332	18539774	.	+	.	ID=Os10t0488800-02;Name=Os10t0488800-02;Locus_id=Os10g0488800;Oryzabase Gene Symbol Synonym(s)=OSMYOVIIIB%2C OsMyoVIIIB;Oryzabase Gene Name Synonym(s)=myosin VIIIB%2C Myosin class VIII B;Note=Similar to Myosin head family protein%2C expressed.;Transcript_evidence=AK058591 (DDBJ%2C Best hit);ORF_evidence=Q337J0 (UniProt);GO=Cellular Component: myosin complex (GO:0016459),Molecular Function: motor activity (GO:0003774),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=IQ motif%2C EF-hand binding site (IPR000048),Myosin head%2C motor domain (IPR001609);NIAS_FLcDNA=001-017-G08;Oryzabase=16004;Expression=AK058591;TENOR=Os10t0488800-02;KEGG=Os10t0488800-02
Chr10	irgsp1_rep	five_prime_UTR	18535332	18535332	.	+	.	Parent=Os10t0488800-02
Chr10	irgsp1_rep	CDS	18535333	18535413	.	+	0	Parent=Os10t0488800-02
Chr10	irgsp1_rep	CDS	18535514	18535666	.	+	0	Parent=Os10t0488800-02
Chr10	irgsp1_rep	CDS	18535746	18535835	.	+	0	Parent=Os10t0488800-02
Chr10	irgsp1_rep	CDS	18536133	18536210	.	+	0	Parent=Os10t0488800-02
Chr10	irgsp1_rep	CDS	18536852	18537010	.	+	0	Parent=Os10t0488800-02
Chr10	irgsp1_rep	CDS	18537095	18537298	.	+	0	Parent=Os10t0488800-02
Chr10	irgsp1_rep	CDS	18537390	18537595	.	+	0	Parent=Os10t0488800-02
Chr10	irgsp1_rep	CDS	18537676	18537811	.	+	1	Parent=Os10t0488800-02
Chr10	irgsp1_rep	CDS	18538040	18538169	.	+	0	Parent=Os10t0488800-02
Chr10	irgsp1_rep	CDS	18538268	18538414	.	+	2	Parent=Os10t0488800-02
Chr10	irgsp1_rep	CDS	18538510	18538589	.	+	2	Parent=Os10t0488800-02
Chr10	irgsp1_rep	CDS	18538750	18539409	.	+	0	Parent=Os10t0488800-02
Chr10	irgsp1_rep	three_prime_UTR	18539410	18539774	.	+	.	Parent=Os10t0488800-02
Chr10	irgsp1_rep	mRNA	18540967	18542668	.	-	.	ID=Os10t0488850-00;Name=Os10t0488850-00;Locus_id=Os10g0488850;Note=Hypothetical gene.;Transcript_evidence=BT084741 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0488850-00;KEGG=Os10t0488850-00
Chr10	irgsp1_rep	five_prime_UTR	18541300	18542668	.	-	.	Parent=Os10t0488850-00
Chr10	irgsp1_rep	CDS	18540967	18541299	.	-	0	Parent=Os10t0488850-00
Chr10	irgsp1_rep	mRNA	18541553	18542794	.	+	.	ID=Os10t0488900-01;Name=Os10t0488900-01;Locus_id=Os10g0488900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK069090 (DDBJ%2C Best hit);ORF_evidence=Q8W5J1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J023006J20;Expression=AK069090;TENOR=Os10t0488900-01;KEGG=Os10t0488900-01
Chr10	irgsp1_rep	five_prime_UTR	18541553	18541554	.	+	.	Parent=Os10t0488900-01
Chr10	irgsp1_rep	CDS	18541555	18542655	.	+	0	Parent=Os10t0488900-01
Chr10	irgsp1_rep	three_prime_UTR	18542656	18542794	.	+	.	Parent=Os10t0488900-01
Chr10	irgsp1_rep	mRNA	18545102	18546241	.	-	.	ID=Os10t0489000-00;Name=Os10t0489000-00;Locus_id=Os10g0489000;Note=Similar to FIP1.;Transcript_evidence=CT835779 (DDBJ%2C Best hit);ORF_evidence=NP_001151980.1 (RefSeq);InterPro=GRAM (IPR004182);TENOR=Os10t0489000-00;KEGG=Os10t0489000-00
Chr10	irgsp1_rep	five_prime_UTR	18546166	18546241	.	-	.	Parent=Os10t0489000-00
Chr10	irgsp1_rep	CDS	18546054	18546165	.	-	0	Parent=Os10t0489000-00
Chr10	irgsp1_rep	CDS	18545877	18545957	.	-	2	Parent=Os10t0489000-00
Chr10	irgsp1_rep	CDS	18545507	18545781	.	-	2	Parent=Os10t0489000-00
Chr10	irgsp1_rep	CDS	18545203	18545379	.	-	0	Parent=Os10t0489000-00
Chr10	irgsp1_rep	three_prime_UTR	18545102	18545202	.	-	.	Parent=Os10t0489000-00
Chr10	irgsp1_rep	mRNA	18548196	18552718	.	+	.	ID=Os10t0489100-01;Name=Os10t0489100-01;Locus_id=Os10g0489100;RAP-DB Gene Symbol Synonym(s)=OsPRMT6a;RAP-DB Gene Name Synonym(s)=protein arginine methyltransferase 6a;CGSNL Gene Symbol=PRMT6A;CGSNL Gene Name=PROTEIN ARGININE METHYLTRANSFERASE 6A;Oryzabase Gene Symbol Synonym(s)=OsPRMT6a;Oryzabase Gene Name Synonym(s)=protein arginine methyltransferase 6a;Note=Protein arginine methyltransferase;Transcript_evidence=AK101865;ORF_evidence=Q75G68;GO=Biological Process: protein methylation (GO:0006479),Molecular Function: methyltransferase activity (GO:0008168);InterPro=S-adenosyl-L-methionine-dependent methyltransferase (IPR029063),Protein arginine N-methyltransferase (IPR025799),Methyltransferase domain (IPR025714);NIAS_FLcDNA=J033070C14;Manual Curation=September 1%2C 2020;Literature_PMID=21853042;Oryzabase=9676;Expression=AK101865;TENOR=Os10t0489100-01;KEGG=Os10t0489100-01 (EC:2.1.1.-);Subcellular location=nucleus (GO:0005634) [mainly]
Chr10	irgsp1_rep	five_prime_UTR	18548196	18548245	.	+	.	Parent=Os10t0489100-01
Chr10	irgsp1_rep	CDS	18548246	18548434	.	+	0	Parent=Os10t0489100-01
Chr10	irgsp1_rep	CDS	18549236	18549301	.	+	0	Parent=Os10t0489100-01
Chr10	irgsp1_rep	CDS	18549437	18549505	.	+	0	Parent=Os10t0489100-01
Chr10	irgsp1_rep	CDS	18549932	18549967	.	+	0	Parent=Os10t0489100-01
Chr10	irgsp1_rep	CDS	18550262	18550327	.	+	0	Parent=Os10t0489100-01
Chr10	irgsp1_rep	CDS	18550556	18550624	.	+	0	Parent=Os10t0489100-01
Chr10	irgsp1_rep	CDS	18550724	18550801	.	+	0	Parent=Os10t0489100-01
Chr10	irgsp1_rep	CDS	18550905	18550983	.	+	0	Parent=Os10t0489100-01
Chr10	irgsp1_rep	CDS	18551180	18551274	.	+	2	Parent=Os10t0489100-01
Chr10	irgsp1_rep	CDS	18551432	18551516	.	+	0	Parent=Os10t0489100-01
Chr10	irgsp1_rep	CDS	18551686	18551879	.	+	2	Parent=Os10t0489100-01
Chr10	irgsp1_rep	CDS	18551985	18552103	.	+	0	Parent=Os10t0489100-01
Chr10	irgsp1_rep	CDS	18552196	18552238	.	+	1	Parent=Os10t0489100-01
Chr10	irgsp1_rep	three_prime_UTR	18552239	18552718	.	+	.	Parent=Os10t0489100-01
Chr10	irgsp1_rep	mRNA	18552974	18559649	.	-	.	ID=Os10t0489200-01;Name=Os10t0489200-01;Locus_id=Os10g0489200;Note=Similar to DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase [ATP]).;Transcript_evidence=AK120278 (DDBJ%2C Best hit);ORF_evidence=B9G6D3 (UniProt);GO=Biological Process: DNA replication (GO:0006260),Biological Process: DNA repair (GO:0006281),Biological Process: DNA recombination (GO:0006310),Biological Process: DNA ligation involved in DNA repair (GO:0051103),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA ligase activity (GO:0003909),Molecular Function: DNA ligase (ATP) activity (GO:0003910),Molecular Function: ATP binding (GO:0005524);InterPro=DNA ligase%2C ATP-dependent (IPR000977),DNA ligase%2C ATP-dependent%2C N-terminal (IPR012308),DNA ligase%2C ATP-dependent%2C C-terminal (IPR012309),DNA ligase%2C ATP-dependent%2C central (IPR012310),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),DNA ligase%2C ATP-dependent%2C conserved site (IPR016059);NIAS_FLcDNA=J013049F02;Expression=AK120278;TENOR=Os10t0489200-01;KEGG=Os10t0489200-01 (EC:6.5.1.1)
Chr10	irgsp1_rep	five_prime_UTR	18559646	18559649	.	-	.	Parent=Os10t0489200-01
Chr10	irgsp1_rep	CDS	18558482	18559645	.	-	0	Parent=Os10t0489200-01
Chr10	irgsp1_rep	CDS	18558272	18558388	.	-	0	Parent=Os10t0489200-01
Chr10	irgsp1_rep	CDS	18557946	18558047	.	-	0	Parent=Os10t0489200-01
Chr10	irgsp1_rep	CDS	18557748	18557861	.	-	0	Parent=Os10t0489200-01
Chr10	irgsp1_rep	CDS	18556974	18557204	.	-	0	Parent=Os10t0489200-01
Chr10	irgsp1_rep	CDS	18556798	18556892	.	-	0	Parent=Os10t0489200-01
Chr10	irgsp1_rep	CDS	18556337	18556424	.	-	1	Parent=Os10t0489200-01
Chr10	irgsp1_rep	CDS	18555990	18556121	.	-	0	Parent=Os10t0489200-01
Chr10	irgsp1_rep	CDS	18555559	18555671	.	-	0	Parent=Os10t0489200-01
Chr10	irgsp1_rep	CDS	18555042	18555143	.	-	1	Parent=Os10t0489200-01
Chr10	irgsp1_rep	CDS	18554790	18554851	.	-	1	Parent=Os10t0489200-01
Chr10	irgsp1_rep	CDS	18554605	18554676	.	-	2	Parent=Os10t0489200-01
Chr10	irgsp1_rep	CDS	18554457	18554530	.	-	2	Parent=Os10t0489200-01
Chr10	irgsp1_rep	CDS	18554350	18554370	.	-	0	Parent=Os10t0489200-01
Chr10	irgsp1_rep	three_prime_UTR	18554293	18554349	.	-	.	Parent=Os10t0489200-01
Chr10	irgsp1_rep	three_prime_UTR	18553683	18553760	.	-	.	Parent=Os10t0489200-01
Chr10	irgsp1_rep	three_prime_UTR	18553519	18553596	.	-	.	Parent=Os10t0489200-01
Chr10	irgsp1_rep	three_prime_UTR	18553355	18553434	.	-	.	Parent=Os10t0489200-01
Chr10	irgsp1_rep	three_prime_UTR	18552974	18553254	.	-	.	Parent=Os10t0489200-01
Chr10	irgsp1_rep	mRNA	18560932	18561435	.	-	.	ID=Os10t0489301-00;Name=Os10t0489301-00;Locus_id=Os10g0489301;Note=Putative ripening-related protein 6.;Transcript_evidence=Q7XD66 (UniProt);ORF_evidence=Q7XD66 (UniProt);InterPro=Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);TENOR=Os10t0489301-00
Chr10	irgsp1_rep	CDS	18560932	18561435	.	-	0	Parent=Os10t0489301-00
Chr10	irgsp1_rep	mRNA	18561003	18561415	.	+	.	ID=Os10t0489350-00;Name=Os10t0489350-00;Locus_id=Os10g0489350;Note=Non-protein coding transcript.;Transcript_evidence=EU948395 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0489350-00
Chr10	irgsp1_rep	exon	18561003	18561415	.	+	.	Parent=Os10t0489350-00
Chr10	irgsp1_rep	mRNA	18565005	18565353	.	+	.	ID=Os10t0489399-00;Name=Os10t0489399-00;Locus_id=Os10g0489399;Note=Non-protein coding transcript.;Transcript_evidence=EU948395 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0489399-00
Chr10	irgsp1_rep	exon	18565005	18565353	.	+	.	Parent=Os10t0489399-00
Chr10	irgsp1_rep	mRNA	18572698	18575727	.	+	.	ID=Os10t0489448-00;Name=Os10t0489448-00;Locus_id=Os10g0489448;Note=Hypothetical protein.;Transcript_evidence=tplb0025l04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0489448-00
Chr10	irgsp1_rep	five_prime_UTR	18572698	18572772	.	+	.	Parent=Os10t0489448-00
Chr10	irgsp1_rep	CDS	18572773	18572974	.	+	0	Parent=Os10t0489448-00
Chr10	irgsp1_rep	CDS	18573248	18573420	.	+	2	Parent=Os10t0489448-00
Chr10	irgsp1_rep	three_prime_UTR	18573421	18573494	.	+	.	Parent=Os10t0489448-00
Chr10	irgsp1_rep	three_prime_UTR	18573749	18573880	.	+	.	Parent=Os10t0489448-00
Chr10	irgsp1_rep	three_prime_UTR	18574010	18574234	.	+	.	Parent=Os10t0489448-00
Chr10	irgsp1_rep	three_prime_UTR	18574853	18575232	.	+	.	Parent=Os10t0489448-00
Chr10	irgsp1_rep	three_prime_UTR	18575564	18575727	.	+	.	Parent=Os10t0489448-00
Chr10	irgsp1_rep	mRNA	18572698	18575857	.	-	.	ID=Os10t0489500-00;Name=Os10t0489500-00;Locus_id=Os10g0489500;Note=Similar to terpene synthase 2.;Transcript_evidence=AK335856 (DDBJ);ORF_evidence=NP_001105854.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: lyase activity (GO:0016829);InterPro=Terpene synthase-like (IPR001906),Terpene synthase%2C metal-binding domain (IPR005630),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930),Terpenoid synthase (IPR008949);TENOR=Os10t0489500-00;KEGG=Os10t0489500-00
Chr10	irgsp1_rep	CDS	18575560	18575857	.	-	0	Parent=Os10t0489500-00
Chr10	irgsp1_rep	CDS	18574853	18575228	.	-	2	Parent=Os10t0489500-00
Chr10	irgsp1_rep	CDS	18574016	18574234	.	-	1	Parent=Os10t0489500-00
Chr10	irgsp1_rep	CDS	18573749	18573887	.	-	1	Parent=Os10t0489500-00
Chr10	irgsp1_rep	CDS	18573258	18573494	.	-	0	Parent=Os10t0489500-00
Chr10	irgsp1_rep	CDS	18572706	18572972	.	-	0	Parent=Os10t0489500-00
Chr10	irgsp1_rep	three_prime_UTR	18572698	18572705	.	-	.	Parent=Os10t0489500-00
Chr10	irgsp1_rep	mRNA	18579905	18580739	.	-	.	ID=Os10t0489650-01;Name=Os10t0489650-01;Locus_id=Os10g0489650;Note=Conserved hypothetical protein.;Transcript_evidence=AK242732 (DDBJ%2C Best hit);ORF_evidence=B9G6D4 (UniProt);NIAS_FLcDNA=J090047M16;TENOR=Os10t0489650-01;KEGG=Os10t0489650-01
Chr10	irgsp1_rep	five_prime_UTR	18580507	18580739	.	-	.	Parent=Os10t0489650-01
Chr10	irgsp1_rep	CDS	18580204	18580506	.	-	0	Parent=Os10t0489650-01
Chr10	irgsp1_rep	three_prime_UTR	18579905	18580203	.	-	.	Parent=Os10t0489650-01
Chr10	irgsp1_rep	mRNA	18588277	18590938	.	-	.	ID=Os10t0489800-01;Name=Os10t0489800-01;Locus_id=Os10g0489800;Note=Protein of unknown function DUF1308 family protein.;Transcript_evidence=AK108069 (DDBJ%2C Best hit);ORF_evidence=Q75G60 (UniProt);InterPro=Protein of unknown function DUF1308 (IPR010733);NIAS_FLcDNA=002-138-C04;Expression=AK108069;TENOR=Os10t0489800-01;KEGG=Os10t0489800-01
Chr10	irgsp1_rep	five_prime_UTR	18590938	18590938	.	-	.	Parent=Os10t0489800-01
Chr10	irgsp1_rep	CDS	18590681	18590937	.	-	0	Parent=Os10t0489800-01
Chr10	irgsp1_rep	CDS	18590061	18590580	.	-	1	Parent=Os10t0489800-01
Chr10	irgsp1_rep	CDS	18589562	18589728	.	-	0	Parent=Os10t0489800-01
Chr10	irgsp1_rep	CDS	18588487	18588694	.	-	1	Parent=Os10t0489800-01
Chr10	irgsp1_rep	three_prime_UTR	18588277	18588486	.	-	.	Parent=Os10t0489800-01
Chr10	irgsp1_rep	mRNA	18591175	18595632	.	+	.	ID=Os10t0489900-01;Name=Os10t0489900-01;Locus_id=Os10g0489900;Note=Similar to CDT1a protein.;Transcript_evidence=AK241768 (DDBJ%2C Best hit);ORF_evidence=B6SH61 (UniProt);InterPro=DNA replication factor CDT1-like (IPR014939);NIAS_FLcDNA=J065205F21;TENOR=Os10t0489900-01;KEGG=Os10t0489900-01
Chr10	irgsp1_rep	five_prime_UTR	18591175	18591347	.	+	.	Parent=Os10t0489900-01
Chr10	irgsp1_rep	five_prime_UTR	18592077	18592091	.	+	.	Parent=Os10t0489900-01
Chr10	irgsp1_rep	CDS	18592092	18592453	.	+	0	Parent=Os10t0489900-01
Chr10	irgsp1_rep	CDS	18592537	18592656	.	+	1	Parent=Os10t0489900-01
Chr10	irgsp1_rep	CDS	18592735	18592963	.	+	1	Parent=Os10t0489900-01
Chr10	irgsp1_rep	CDS	18593174	18593833	.	+	0	Parent=Os10t0489900-01
Chr10	irgsp1_rep	CDS	18594405	18594606	.	+	0	Parent=Os10t0489900-01
Chr10	irgsp1_rep	CDS	18594702	18594792	.	+	2	Parent=Os10t0489900-01
Chr10	irgsp1_rep	CDS	18594961	18595018	.	+	1	Parent=Os10t0489900-01
Chr10	irgsp1_rep	three_prime_UTR	18595019	18595632	.	+	.	Parent=Os10t0489900-01
Chr10	irgsp1_rep	mRNA	18598558	18599387	.	+	.	ID=Os10t0490100-01;Name=Os10t0490100-01;Locus_id=Os10g0490100;Oryzabase Gene Symbol Synonym(s)=qPSR10;Oryzabase Gene Name Synonym(s)=candidate gene for qPSR10;Note=Virulence factor%2C pectin lyase fold family protein.;Transcript_evidence=AK102387 (DDBJ%2C Best hit);ORF_evidence=Q9FWT5 (UniProt);InterPro=Barwin-related endoglucanase (IPR009009);NIAS_FLcDNA=J033092D15;Oryzabase=22478;Expression=AK102387;TENOR=Os10t0490100-01;KEGG=Os10t0490100-01
Chr10	irgsp1_rep	five_prime_UTR	18598558	18598578	.	+	.	Parent=Os10t0490100-01
Chr10	irgsp1_rep	CDS	18598579	18599220	.	+	0	Parent=Os10t0490100-01
Chr10	irgsp1_rep	three_prime_UTR	18599221	18599387	.	+	.	Parent=Os10t0490100-01
Chr10	irgsp1_rep	mRNA	18621070	18621528	.	-	.	ID=Os10t0490400-00;Name=Os10t0490400-00;Locus_id=Os10g0490400;CGSNL Gene Symbol=DLN238;CGSNL Gene Name=DLN REPRESSOR 238;Oryzabase Gene Symbol Synonym(s)=OsDLN238;Oryzabase Gene Name Synonym(s)=DLN repressor 238%2C DLN motif protein 238;Note=Similar to OSIGBa0135K14.7 protein.;Transcript_evidence=AK368682 (DDBJ);ORF_evidence=Q01LQ5 (UniProt);Oryzabase=23233;TENOR=Os10t0490400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	18621070	18621528	.	-	0	Parent=Os10t0490400-00
Chr10	irgsp1_rep	mRNA	18628907	18629394	.	+	.	ID=Os10t0490534-00;Name=Os10t0490534-00;Locus_id=Os10g0490534;Note=Hypothetical protein.;Transcript_evidence=EU948395 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0490534-00
Chr10	irgsp1_rep	five_prime_UTR	18628907	18628908	.	+	.	Parent=Os10t0490534-00
Chr10	irgsp1_rep	CDS	18628909	18629289	.	+	0	Parent=Os10t0490534-00
Chr10	irgsp1_rep	three_prime_UTR	18629290	18629394	.	+	.	Parent=Os10t0490534-00
Chr10	irgsp1_rep	mRNA	18631316	18631966	.	-	.	ID=Os10t0490666-00;Name=Os10t0490666-00;Locus_id=Os10g0490666;Note=Similar to Barwin-related endoglucanase.;Transcript_evidence=Q9FWU1 (UniProt);ORF_evidence=Q9FWU1 (UniProt);InterPro=Barwin-related endoglucanase (IPR009009);TENOR=Os10t0490666-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	18631316	18631966	.	-	0	Parent=Os10t0490666-00
Chr10	irgsp1_rep	mRNA	18635437	18636123	.	-	.	ID=Os10t0490800-00;Name=Os10t0490800-00;Locus_id=Os10g0490800;Note=Similar to Secretory protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B6TDW7 (UniProt);InterPro=Uncharacterised protein family%2C basic secretory protein (IPR007541);TENOR=Os10t0490800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	18635437	18636123	.	-	0	Parent=Os10t0490800-00
Chr10	irgsp1_rep	mRNA	18637489	18638521	.	-	.	ID=Os10t0490900-00;Name=Os10t0490900-00;Locus_id=Os10g0490900;Note=Similar to Secretory protein.;Transcript_evidence=CT835760 (DDBJ%2C Best hit);ORF_evidence=B6TDW7 (UniProt);InterPro=Uncharacterised protein family%2C basic secretory protein (IPR007541);TENOR=Os10t0490900-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	18638486	18638521	.	-	.	Parent=Os10t0490900-00
Chr10	irgsp1_rep	CDS	18637790	18638485	.	-	0	Parent=Os10t0490900-00
Chr10	irgsp1_rep	three_prime_UTR	18637623	18637789	.	-	.	Parent=Os10t0490900-00
Chr10	irgsp1_rep	three_prime_UTR	18637489	18637602	.	-	.	Parent=Os10t0490900-00
Chr10	irgsp1_rep	mRNA	18640397	18641882	.	+	.	ID=Os10t0491000-01;Name=Os10t0491000-01;Locus_id=Os10g0491000;Oryzabase Gene Name Synonym(s)=basic secretory protein;Note=Plant Basic Secretory Protein family protein.;Transcript_evidence=AK100816 (DDBJ%2C Best hit),AK059607 (DDBJ%2C Best hit);ORF_evidence=B6TDW7 (UniProt);InterPro=Uncharacterised protein family%2C basic secretory protein (IPR007541);NIAS_FLcDNA=J023122C23,001-030-F02;Oryzabase=19100;TENOR=Os10t0491000-01
Chr10	irgsp1_rep	five_prime_UTR	18640397	18640416	.	+	.	Parent=Os10t0491000-01
Chr10	irgsp1_rep	CDS	18640417	18640764	.	+	0	Parent=Os10t0491000-01
Chr10	irgsp1_rep	CDS	18641395	18641736	.	+	0	Parent=Os10t0491000-01
Chr10	irgsp1_rep	three_prime_UTR	18641737	18641882	.	+	.	Parent=Os10t0491000-01
Chr10	irgsp1_rep	mRNA	18642323	18644861	.	+	.	ID=Os10t0491100-01;Name=Os10t0491100-01;Locus_id=Os10g0491100;Note=Hypothetical conserved gene.;Transcript_evidence=AK242276 (DDBJ%2C Best hit);ORF_evidence=Q5Z6L1 (UniProt);NIAS_FLcDNA=J075187K15;TENOR=Os10t0491100-01;KEGG=Os10t0491100-01
Chr10	irgsp1_rep	five_prime_UTR	18642323	18642324	.	+	.	Parent=Os10t0491100-01
Chr10	irgsp1_rep	CDS	18642325	18642444	.	+	0	Parent=Os10t0491100-01
Chr10	irgsp1_rep	three_prime_UTR	18642445	18642445	.	+	.	Parent=Os10t0491100-01
Chr10	irgsp1_rep	three_prime_UTR	18642571	18642742	.	+	.	Parent=Os10t0491100-01
Chr10	irgsp1_rep	three_prime_UTR	18643220	18643325	.	+	.	Parent=Os10t0491100-01
Chr10	irgsp1_rep	three_prime_UTR	18644574	18644861	.	+	.	Parent=Os10t0491100-01
Chr10	irgsp1_rep	mRNA	18651725	18651945	.	+	.	ID=Os10t0491250-00;Name=Os10t0491250-00;Locus_id=Os10g0491250;Note=Similar to Chlorophyll a-b binding protein 3C-like.;Transcript_evidence=AJ234427 (DDBJ);ORF_evidence=Q2XTE0 (UniProt);TENOR=Os10t0491250-00
Chr10	irgsp1_rep	five_prime_UTR	18651725	18651771	.	+	.	Parent=Os10t0491250-00
Chr10	irgsp1_rep	CDS	18651772	18651945	.	+	0	Parent=Os10t0491250-00
Chr10	irgsp1_rep	mRNA	18656488	18657276	.	+	.	ID=Os10t0491400-01;Name=Os10t0491400-01;Locus_id=Os10g0491400;Note=Conserved hypothetical protein.;Transcript_evidence=AK063103 (DDBJ%2C Best hit);ORF_evidence=Q337I2 (UniProt);NIAS_FLcDNA=001-111-C11;Expression=AK063103;TENOR=Os10t0491400-01;KEGG=Os10t0491400-01
Chr10	irgsp1_rep	five_prime_UTR	18656488	18656548	.	+	.	Parent=Os10t0491400-01
Chr10	irgsp1_rep	CDS	18656549	18656612	.	+	0	Parent=Os10t0491400-01
Chr10	irgsp1_rep	CDS	18656808	18656917	.	+	2	Parent=Os10t0491400-01
Chr10	irgsp1_rep	three_prime_UTR	18656918	18657276	.	+	.	Parent=Os10t0491400-01
Chr10	irgsp1_rep	mRNA	18657752	18658090	.	-	.	ID=Os10t0491450-00;Name=Os10t0491450-00;Locus_id=Os10g0491450;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q9FWU6 (UniProt);TENOR=Os10t0491450-00
Chr10	irgsp1_rep	CDS	18657752	18658090	.	-	0	Parent=Os10t0491450-00
Chr10	irgsp1_rep	mRNA	18666474	18667000	.	-	.	ID=Os10t0491801-00;Name=Os10t0491801-00;Locus_id=Os10g0491801;Note=Similar to ubiquitin.;Transcript_evidence=AK357664 (DDBJ);ORF_evidence=NP_001131602.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735),Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin (IPR000626),Ribosomal protein S27a (IPR002906),Ubiquitin conserved site (IPR019954),Ubiquitin supergroup (IPR019955),Ubiquitin subgroup (IPR019956);TENOR=Os10t0491801-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	18666950	18667000	.	-	.	Parent=Os10t0491801-00
Chr10	irgsp1_rep	CDS	18666506	18666949	.	-	0	Parent=Os10t0491801-00
Chr10	irgsp1_rep	three_prime_UTR	18666474	18666505	.	-	.	Parent=Os10t0491801-00
Chr10	irgsp1_rep	mRNA	18667175	18669329	.	+	.	ID=Os10t0491900-01;Name=Os10t0491900-01;Locus_id=Os10g0491900;Note=D111/G-patch domain containing protein.;Transcript_evidence=AK241998 (DDBJ%2C Best hit);ORF_evidence=B6T6P5 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676);InterPro=D111/G-patch (IPR000467);NIAS_FLcDNA=J075100E01;TENOR=Os10t0491900-01;KEGG=Os10t0491900-01
Chr10	irgsp1_rep	five_prime_UTR	18667175	18667269	.	+	.	Parent=Os10t0491900-01
Chr10	irgsp1_rep	CDS	18667270	18667305	.	+	0	Parent=Os10t0491900-01
Chr10	irgsp1_rep	CDS	18667492	18667545	.	+	0	Parent=Os10t0491900-01
Chr10	irgsp1_rep	CDS	18668490	18668609	.	+	0	Parent=Os10t0491900-01
Chr10	irgsp1_rep	CDS	18669006	18669137	.	+	0	Parent=Os10t0491900-01
Chr10	irgsp1_rep	three_prime_UTR	18669138	18669329	.	+	.	Parent=Os10t0491900-01
Chr10	irgsp1_rep	mRNA	18670868	18676503	.	-	.	ID=Os10t0492000-01;Name=Os10t0492000-01;Locus_id=Os10g0492000;Note=Conserved hypothetical protein.;Transcript_evidence=AK064354 (DDBJ%2C Best hit);ORF_evidence=B9G6E3 (UniProt);NIAS_FLcDNA=002-108-A12;TENOR=Os10t0492000-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	18676503	18676503	.	-	.	Parent=Os10t0492000-01
Chr10	irgsp1_rep	CDS	18676467	18676502	.	-	0	Parent=Os10t0492000-01
Chr10	irgsp1_rep	CDS	18676280	18676348	.	-	0	Parent=Os10t0492000-01
Chr10	irgsp1_rep	CDS	18676098	18676196	.	-	0	Parent=Os10t0492000-01
Chr10	irgsp1_rep	CDS	18675348	18675414	.	-	0	Parent=Os10t0492000-01
Chr10	irgsp1_rep	CDS	18675078	18675142	.	-	2	Parent=Os10t0492000-01
Chr10	irgsp1_rep	CDS	18674742	18674836	.	-	0	Parent=Os10t0492000-01
Chr10	irgsp1_rep	CDS	18674342	18674466	.	-	1	Parent=Os10t0492000-01
Chr10	irgsp1_rep	CDS	18674157	18674257	.	-	2	Parent=Os10t0492000-01
Chr10	irgsp1_rep	CDS	18672791	18673004	.	-	0	Parent=Os10t0492000-01
Chr10	irgsp1_rep	CDS	18671834	18671988	.	-	2	Parent=Os10t0492000-01
Chr10	irgsp1_rep	CDS	18671604	18671726	.	-	0	Parent=Os10t0492000-01
Chr10	irgsp1_rep	CDS	18670868	18671498	.	-	0	Parent=Os10t0492000-01
Chr10	irgsp1_rep	mRNA	18678132	18678989	.	-	.	ID=Os10t0492101-00;Name=Os10t0492101-00;Locus_id=Os10g0492101;Note=Hypothetical conserved gene.;Transcript_evidence=CT841749 (DDBJ%2C Best hit);ORF_evidence=Q9FWV2 (UniProt);TENOR=Os10t0492101-00;KEGG=Os10t0492101-00
Chr10	irgsp1_rep	five_prime_UTR	18678816	18678989	.	-	.	Parent=Os10t0492101-00
Chr10	irgsp1_rep	CDS	18678288	18678815	.	-	0	Parent=Os10t0492101-00
Chr10	irgsp1_rep	three_prime_UTR	18678132	18678287	.	-	.	Parent=Os10t0492101-00
Chr10	irgsp1_rep	mRNA	18682981	18685457	.	-	.	ID=Os10t0492200-01;Name=Os10t0492200-01;Locus_id=Os10g0492200;Note=Glycosyltransferase AER61%2C uncharacterized domain containing protein.;Transcript_evidence=AK109476 (DDBJ%2C Best hit);ORF_evidence=NP_001105165.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyltransferase AER61%2C uncharacterised (IPR007657);NIAS_FLcDNA=001-200-C03;Oryzabase=15273;Expression=AK109476;TENOR=Os10t0492200-01;KEGG=Os10t0492200-01
Chr10	irgsp1_rep	five_prime_UTR	18685313	18685457	.	-	.	Parent=Os10t0492200-01
Chr10	irgsp1_rep	CDS	18685183	18685312	.	-	0	Parent=Os10t0492200-01
Chr10	irgsp1_rep	CDS	18684937	18685059	.	-	2	Parent=Os10t0492200-01
Chr10	irgsp1_rep	CDS	18683328	18684577	.	-	2	Parent=Os10t0492200-01
Chr10	irgsp1_rep	three_prime_UTR	18682981	18683327	.	-	.	Parent=Os10t0492200-01
Chr10	irgsp1_rep	mRNA	18687994	18693376	.	-	.	ID=Os10t0492300-01;Name=Os10t0492300-01;Locus_id=Os10g0492300;Note=Similar to IAP100.;Transcript_evidence=AK120578 (DDBJ%2C Best hit);ORF_evidence=O24303 (UniProt);NIAS_FLcDNA=J013135E03;Expression=AK120578;TENOR=Os10t0492300-01;KEGG=Os10t0492300-01
Chr10	irgsp1_rep	five_prime_UTR	18693334	18693376	.	-	.	Parent=Os10t0492300-01
Chr10	irgsp1_rep	CDS	18693027	18693333	.	-	0	Parent=Os10t0492300-01
Chr10	irgsp1_rep	CDS	18692867	18692981	.	-	2	Parent=Os10t0492300-01
Chr10	irgsp1_rep	CDS	18692485	18692544	.	-	1	Parent=Os10t0492300-01
Chr10	irgsp1_rep	CDS	18692236	18692359	.	-	1	Parent=Os10t0492300-01
Chr10	irgsp1_rep	CDS	18692058	18692102	.	-	0	Parent=Os10t0492300-01
Chr10	irgsp1_rep	CDS	18691877	18691975	.	-	0	Parent=Os10t0492300-01
Chr10	irgsp1_rep	CDS	18690097	18690163	.	-	0	Parent=Os10t0492300-01
Chr10	irgsp1_rep	CDS	18689809	18689873	.	-	2	Parent=Os10t0492300-01
Chr10	irgsp1_rep	CDS	18689472	18689545	.	-	0	Parent=Os10t0492300-01
Chr10	irgsp1_rep	CDS	18689227	18689351	.	-	1	Parent=Os10t0492300-01
Chr10	irgsp1_rep	CDS	18689042	18689142	.	-	2	Parent=Os10t0492300-01
Chr10	irgsp1_rep	CDS	18688335	18688436	.	-	0	Parent=Os10t0492300-01
Chr10	irgsp1_rep	three_prime_UTR	18687994	18688334	.	-	.	Parent=Os10t0492300-01
Chr10	irgsp1_rep	mRNA	18697375	18700436	.	+	.	ID=Os10t0492400-01;Name=Os10t0492400-01;Locus_id=Os10g0492400;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=AK243254 (DDBJ%2C Best hit);ORF_evidence=Q7XD42 (UniProt);NIAS_FLcDNA=J100048F03;TENOR=Os10t0492400-01;KEGG=Os10t0492400-01
Chr10	irgsp1_rep	five_prime_UTR	18697375	18697520	.	+	.	Parent=Os10t0492400-01
Chr10	irgsp1_rep	CDS	18697521	18698479	.	+	0	Parent=Os10t0492400-01
Chr10	irgsp1_rep	CDS	18698559	18698568	.	+	1	Parent=Os10t0492400-01
Chr10	irgsp1_rep	three_prime_UTR	18698569	18699011	.	+	.	Parent=Os10t0492400-01
Chr10	irgsp1_rep	three_prime_UTR	18699440	18700436	.	+	.	Parent=Os10t0492400-01
Chr10	irgsp1_rep	mRNA	18700552	18702339	.	-	.	ID=Os10t0492500-01;Name=Os10t0492500-01;Locus_id=Os10g0492500;Note=Similar to Tonoplast membrane integral protein ZmTIP3-1.;Transcript_evidence=AK106383 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-102-E03;Expression=AK106383;TENOR=Os10t0492500-01;KEGG=Os10t0492500-01
Chr10	irgsp1_rep	five_prime_UTR	18701977	18702339	.	-	.	Parent=Os10t0492500-01
Chr10	irgsp1_rep	CDS	18701167	18701976	.	-	0	Parent=Os10t0492500-01
Chr10	irgsp1_rep	three_prime_UTR	18700552	18701166	.	-	.	Parent=Os10t0492500-01
Chr10	irgsp1_rep	mRNA	18701151	18702537	.	+	.	ID=Os10t0492600-01;Name=Os10t0492600-01;Locus_id=Os10g0492600;CGSNL Gene Symbol=TIP3%3B1;CGSNL Gene Name=TONOPLAST INTRINSIC PROTEIN 3%3B1;Oryzabase Gene Symbol Synonym(s)=OsTIP3%3B1%2C TIP3-1%2C TIP3.1%2C TIP3%2C OsEnS-139;Oryzabase Gene Name Synonym(s)=Probable aquaporin TIP3.1%2C Probable aquaporin TIP3-1%2C Tonoplast intrinsic protein 3-1%2C endosperm-specific gene 139;Note=Similar to Tonoplast membrane integral protein ZmTIP3-1.;Transcript_evidence=AK111931 (DDBJ%2C Best hit);ORF_evidence=NP_001105032.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: water transport (GO:0006833),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Aquaporin (IPR012269),Major intrinsic protein%2C conserved site (IPR022357),Aquaporin-like (IPR023271);NIAS_FLcDNA=001-016-C03;Oryzabase=8382;Expression=AK111931;TENOR=Os10t0492600-01;KEGG=Os10t0492600-01
Chr10	irgsp1_rep	five_prime_UTR	18701151	18701307	.	+	.	Parent=Os10t0492600-01
Chr10	irgsp1_rep	CDS	18701308	18701458	.	+	0	Parent=Os10t0492600-01
Chr10	irgsp1_rep	CDS	18701561	18701808	.	+	2	Parent=Os10t0492600-01
Chr10	irgsp1_rep	CDS	18701894	18702289	.	+	0	Parent=Os10t0492600-01
Chr10	irgsp1_rep	three_prime_UTR	18702290	18702537	.	+	.	Parent=Os10t0492600-01
Chr10	irgsp1_rep	mRNA	18703209	18706226	.	-	.	ID=Os10t0492800-01;Name=Os10t0492800-01;Locus_id=Os10g0492800;Note=Similar to Ser/Thr protein phosphatase family.;Transcript_evidence=AK287952 (DDBJ%2C Best hit);ORF_evidence=NP_001148330.1 (RefSeq);NIAS_FLcDNA=J075034O13;TENOR=Os10t0492800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	18706125	18706226	.	-	.	Parent=Os10t0492800-01
Chr10	irgsp1_rep	CDS	18705753	18706124	.	-	0	Parent=Os10t0492800-01
Chr10	irgsp1_rep	CDS	18704985	18705104	.	-	0	Parent=Os10t0492800-01
Chr10	irgsp1_rep	CDS	18704848	18704901	.	-	0	Parent=Os10t0492800-01
Chr10	irgsp1_rep	CDS	18704322	18704485	.	-	0	Parent=Os10t0492800-01
Chr10	irgsp1_rep	CDS	18703753	18703929	.	-	1	Parent=Os10t0492800-01
Chr10	irgsp1_rep	CDS	18703461	18703671	.	-	1	Parent=Os10t0492800-01
Chr10	irgsp1_rep	three_prime_UTR	18703209	18703460	.	-	.	Parent=Os10t0492800-01
Chr10	irgsp1_rep	mRNA	18707782	18710608	.	+	.	ID=Os10t0492900-01;Name=Os10t0492900-01;Locus_id=Os10g0492900;Note=Similar to alpha-galactosidase.;Transcript_evidence=AK240700 (DDBJ%2C Best hit);ORF_evidence=NP_001147362.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C clan GH-D (IPR000111),Glycoside hydrolase%2C family 27 (IPR002241),Aldolase-type TIM barrel (IPR013785),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J043015M16;TENOR=Os10t0492900-01;KEGG=Os10t0492900-01
Chr10	irgsp1_rep	five_prime_UTR	18707782	18707816	.	+	.	Parent=Os10t0492900-01
Chr10	irgsp1_rep	CDS	18707817	18707965	.	+	0	Parent=Os10t0492900-01
Chr10	irgsp1_rep	CDS	18708172	18708233	.	+	1	Parent=Os10t0492900-01
Chr10	irgsp1_rep	CDS	18708562	18708618	.	+	2	Parent=Os10t0492900-01
Chr10	irgsp1_rep	CDS	18708952	18708986	.	+	2	Parent=Os10t0492900-01
Chr10	irgsp1_rep	CDS	18709121	18709224	.	+	0	Parent=Os10t0492900-01
Chr10	irgsp1_rep	CDS	18709419	18709494	.	+	1	Parent=Os10t0492900-01
Chr10	irgsp1_rep	CDS	18709650	18709708	.	+	0	Parent=Os10t0492900-01
Chr10	irgsp1_rep	CDS	18709814	18709879	.	+	1	Parent=Os10t0492900-01
Chr10	irgsp1_rep	CDS	18710060	18710143	.	+	1	Parent=Os10t0492900-01
Chr10	irgsp1_rep	CDS	18710246	18710310	.	+	1	Parent=Os10t0492900-01
Chr10	irgsp1_rep	CDS	18710422	18710534	.	+	2	Parent=Os10t0492900-01
Chr10	irgsp1_rep	three_prime_UTR	18710535	18710608	.	+	.	Parent=Os10t0492900-01
Chr10	irgsp1_rep	mRNA	18718146	18722354	.	-	.	ID=Os10t0493100-01;Name=Os10t0493100-01;Locus_id=Os10g0493100;Oryzabase Gene Symbol Synonym(s)=PPR1;Oryzabase Gene Name Synonym(s)=pentatricopeptide repeat motif containing gene 1%2C PPR motif-containing gene 1;Note=K Homology%2C type 1 domain containing protein.;Transcript_evidence=AK101909 (DDBJ%2C Best hit);ORF_evidence=A3C631 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=K Homology%2C type 1 (IPR004088),K Homology%2C type 1%2C subgroup (IPR018111);NIAS_FLcDNA=J033071F06;Oryzabase=19661;TENOR=Os10t0493100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	18722238	18722354	.	-	.	Parent=Os10t0493100-01
Chr10	irgsp1_rep	five_prime_UTR	18720467	18722144	.	-	.	Parent=Os10t0493100-01
Chr10	irgsp1_rep	CDS	18720419	18720466	.	-	0	Parent=Os10t0493100-01
Chr10	irgsp1_rep	CDS	18720010	18720093	.	-	0	Parent=Os10t0493100-01
Chr10	irgsp1_rep	CDS	18719735	18719917	.	-	0	Parent=Os10t0493100-01
Chr10	irgsp1_rep	three_prime_UTR	18719671	18719734	.	-	.	Parent=Os10t0493100-01
Chr10	irgsp1_rep	three_prime_UTR	18718904	18719561	.	-	.	Parent=Os10t0493100-01
Chr10	irgsp1_rep	three_prime_UTR	18718410	18718465	.	-	.	Parent=Os10t0493100-01
Chr10	irgsp1_rep	three_prime_UTR	18718146	18718326	.	-	.	Parent=Os10t0493100-01
Chr10	irgsp1_rep	mRNA	18718071	18721858	.	-	.	ID=Os10t0493100-02;Name=Os10t0493100-02;Locus_id=Os10g0493100;Oryzabase Gene Symbol Synonym(s)=PPR1;Oryzabase Gene Name Synonym(s)=pentatricopeptide repeat motif containing gene 1%2C PPR motif-containing gene 1;Note=Similar to KH domain containing protein%2C expressed.;Transcript_evidence=AK100638 (DDBJ%2C Best hit);ORF_evidence=Q7G2G8 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=K Homology%2C type 1 (IPR004088),K Homology%2C type 1%2C subgroup (IPR018111);NIAS_FLcDNA=J023110F04;Oryzabase=19661;TENOR=Os10t0493100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	18720467	18721858	.	-	.	Parent=Os10t0493100-02
Chr10	irgsp1_rep	CDS	18720419	18720466	.	-	0	Parent=Os10t0493100-02
Chr10	irgsp1_rep	CDS	18720010	18720093	.	-	0	Parent=Os10t0493100-02
Chr10	irgsp1_rep	CDS	18719735	18719917	.	-	0	Parent=Os10t0493100-02
Chr10	irgsp1_rep	three_prime_UTR	18718410	18719734	.	-	.	Parent=Os10t0493100-02
Chr10	irgsp1_rep	three_prime_UTR	18718071	18718326	.	-	.	Parent=Os10t0493100-02
Chr10	irgsp1_rep	mRNA	18721019	18721830	.	-	.	ID=Os10t0493100-03;Name=Os10t0493100-03;Locus_id=Os10g0493100;Oryzabase Gene Symbol Synonym(s)=PPR1;Oryzabase Gene Name Synonym(s)=pentatricopeptide repeat motif containing gene 1%2C PPR motif-containing gene 1;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK063145 (DDBJ%2C Best hit);ORF_evidence=Q9FWW0 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=001-111-H01;Oryzabase=19661;TENOR=Os10t0493100-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	18721192	18721830	.	-	0	Parent=Os10t0493100-03
Chr10	irgsp1_rep	three_prime_UTR	18721019	18721191	.	-	.	Parent=Os10t0493100-03
Chr10	irgsp1_rep	mRNA	18719432	18719961	.	+	.	ID=Os10t0493201-00;Name=Os10t0493201-00;Locus_id=Os10g0493201;Note=Non-protein coding transcript.;Transcript_evidence=EU946286 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0493201-00
Chr10	irgsp1_rep	exon	18719432	18719961	.	+	.	Parent=Os10t0493201-00
Chr10	irgsp1_rep	mRNA	18723961	18725462	.	-	.	ID=Os10t0493300-01;Name=Os10t0493300-01;Locus_id=Os10g0493300;Note=Hypothetical protein.;Transcript_evidence=AK065202 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013002F01;Expression=AK065202;TENOR=Os10t0493300-01;KEGG=Os10t0493300-01
Chr10	irgsp1_rep	five_prime_UTR	18725194	18725462	.	-	.	Parent=Os10t0493300-01
Chr10	irgsp1_rep	CDS	18724879	18725193	.	-	0	Parent=Os10t0493300-01
Chr10	irgsp1_rep	three_prime_UTR	18723961	18724878	.	-	.	Parent=Os10t0493300-01
Chr10	irgsp1_rep	mRNA	18724001	18724784	.	-	.	ID=Os10t0493300-02;Name=Os10t0493300-02;Locus_id=Os10g0493300;Note=Hypothetical conserved gene.;Transcript_evidence=AK121914 (DDBJ%2C Best hit);ORF_evidence=Q2QYM5 (UniProt);NIAS_FLcDNA=J033106B05;TENOR=Os10t0493300-02;KEGG=Os10t0493300-02
Chr10	irgsp1_rep	five_prime_UTR	18724238	18724784	.	-	.	Parent=Os10t0493300-02
Chr10	irgsp1_rep	CDS	18724001	18724237	.	-	0	Parent=Os10t0493300-02
Chr10	irgsp1_rep	mRNA	18733290	18740913	.	+	.	ID=Os10t0493600-01;Name=Os10t0493600-01;Locus_id=Os10g0493600;Oryzabase Gene Symbol Synonym(s)=alphaGa1%2C alpha-Gal I;Oryzabase Gene Name Synonym(s)=Alpha-D-galactoside galactohydrolase%2C alpha-galactosidase 1%2C alpha-galactosidase I;Note=Alpha-galactosidase precursor (EC 3.2.1.22) (Melibiase) (Alpha-D- galactoside galactohydrolase).;Transcript_evidence=AK068374 (DDBJ%2C Best hit);ORF_evidence=Q84VQ7 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C clan GH-D (IPR000111),Glycoside hydrolase%2C family 27 (IPR002241),Glycosyl hydrolase%2C family 13%2C all-beta (IPR013780),Aldolase-type TIM barrel (IPR013785),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J013151E12;Oryzabase=19110;Expression=AK068374;TENOR=Os10t0493600-01;KEGG=Os10t0493600-01 (EC:3.2.1.22)
Chr10	irgsp1_rep	five_prime_UTR	18733290	18733343	.	+	.	Parent=Os10t0493600-01
Chr10	irgsp1_rep	CDS	18733344	18733543	.	+	0	Parent=Os10t0493600-01
Chr10	irgsp1_rep	CDS	18735569	18735627	.	+	1	Parent=Os10t0493600-01
Chr10	irgsp1_rep	CDS	18738208	18738264	.	+	2	Parent=Os10t0493600-01
Chr10	irgsp1_rep	CDS	18738426	18738460	.	+	2	Parent=Os10t0493600-01
Chr10	irgsp1_rep	CDS	18738798	18738901	.	+	0	Parent=Os10t0493600-01
Chr10	irgsp1_rep	CDS	18739051	18739126	.	+	1	Parent=Os10t0493600-01
Chr10	irgsp1_rep	CDS	18739226	18739284	.	+	0	Parent=Os10t0493600-01
Chr10	irgsp1_rep	CDS	18739364	18739429	.	+	1	Parent=Os10t0493600-01
Chr10	irgsp1_rep	CDS	18739519	18739602	.	+	1	Parent=Os10t0493600-01
Chr10	irgsp1_rep	CDS	18739684	18739748	.	+	1	Parent=Os10t0493600-01
Chr10	irgsp1_rep	CDS	18739839	18739921	.	+	2	Parent=Os10t0493600-01
Chr10	irgsp1_rep	CDS	18740013	18740101	.	+	0	Parent=Os10t0493600-01
Chr10	irgsp1_rep	CDS	18740186	18740237	.	+	1	Parent=Os10t0493600-01
Chr10	irgsp1_rep	CDS	18740347	18740487	.	+	0	Parent=Os10t0493600-01
Chr10	irgsp1_rep	CDS	18740576	18740659	.	+	0	Parent=Os10t0493600-01
Chr10	irgsp1_rep	three_prime_UTR	18740660	18740913	.	+	.	Parent=Os10t0493600-01
Chr10	irgsp1_rep	mRNA	18733364	18741383	.	+	.	ID=Os10t0493600-02;Name=Os10t0493600-02;Locus_id=Os10g0493600;Oryzabase Gene Symbol Synonym(s)=alphaGa1%2C alpha-Gal I;Oryzabase Gene Name Synonym(s)=Alpha-D-galactoside galactohydrolase%2C alpha-galactosidase 1%2C alpha-galactosidase I;Note=Alpha-galactosidase (EC 3.2.1.22).;Transcript_evidence=AK068613 (DDBJ%2C Best hit);ORF_evidence=Q84VQ7 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C clan GH-D (IPR000111),Glycoside hydrolase%2C family 27 (IPR002241),Glycosyl hydrolase%2C family 13%2C all-beta (IPR013780),Aldolase-type TIM barrel (IPR013785),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J013155H12;Oryzabase=19110;Expression=AK068613;TENOR=Os10t0493600-02;KEGG=Os10t0493600-02 (EC:3.2.1.22)
Chr10	irgsp1_rep	five_prime_UTR	18733364	18733364	.	+	.	Parent=Os10t0493600-02
Chr10	irgsp1_rep	CDS	18733365	18733543	.	+	0	Parent=Os10t0493600-02
Chr10	irgsp1_rep	CDS	18735569	18735627	.	+	1	Parent=Os10t0493600-02
Chr10	irgsp1_rep	CDS	18738208	18738264	.	+	2	Parent=Os10t0493600-02
Chr10	irgsp1_rep	CDS	18738426	18738460	.	+	2	Parent=Os10t0493600-02
Chr10	irgsp1_rep	CDS	18738798	18738901	.	+	0	Parent=Os10t0493600-02
Chr10	irgsp1_rep	CDS	18739051	18739126	.	+	1	Parent=Os10t0493600-02
Chr10	irgsp1_rep	CDS	18739226	18739284	.	+	0	Parent=Os10t0493600-02
Chr10	irgsp1_rep	CDS	18739364	18739429	.	+	1	Parent=Os10t0493600-02
Chr10	irgsp1_rep	CDS	18739519	18739602	.	+	1	Parent=Os10t0493600-02
Chr10	irgsp1_rep	CDS	18739684	18739748	.	+	1	Parent=Os10t0493600-02
Chr10	irgsp1_rep	CDS	18739839	18739921	.	+	2	Parent=Os10t0493600-02
Chr10	irgsp1_rep	CDS	18740013	18740101	.	+	0	Parent=Os10t0493600-02
Chr10	irgsp1_rep	CDS	18740186	18740237	.	+	1	Parent=Os10t0493600-02
Chr10	irgsp1_rep	CDS	18740347	18740487	.	+	0	Parent=Os10t0493600-02
Chr10	irgsp1_rep	CDS	18740576	18740659	.	+	0	Parent=Os10t0493600-02
Chr10	irgsp1_rep	three_prime_UTR	18740660	18740681	.	+	.	Parent=Os10t0493600-02
Chr10	irgsp1_rep	three_prime_UTR	18741000	18741383	.	+	.	Parent=Os10t0493600-02
Chr10	irgsp1_rep	mRNA	18733486	18740916	.	+	.	ID=Os10t0493600-03;Name=Os10t0493600-03;Locus_id=Os10g0493600;Oryzabase Gene Symbol Synonym(s)=alphaGa1%2C alpha-Gal I;Oryzabase Gene Name Synonym(s)=Alpha-D-galactoside galactohydrolase%2C alpha-galactosidase 1%2C alpha-galactosidase I;Note=Similar to Alpha-galactosidase.;Transcript_evidence=AK059912 (DDBJ%2C Best hit);ORF_evidence=Q84VQ7 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C clan GH-D (IPR000111),Glycoside hydrolase%2C family 27 (IPR002241),Glycosyl hydrolase%2C family 13%2C all-beta (IPR013780),Aldolase-type TIM barrel (IPR013785),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=006-209-D08;Oryzabase=19110;Expression=AK059912;TENOR=Os10t0493600-03;KEGG=Os10t0493600-03
Chr10	irgsp1_rep	five_prime_UTR	18733486	18733487	.	+	.	Parent=Os10t0493600-03
Chr10	irgsp1_rep	CDS	18733488	18733543	.	+	0	Parent=Os10t0493600-03
Chr10	irgsp1_rep	CDS	18735569	18735627	.	+	1	Parent=Os10t0493600-03
Chr10	irgsp1_rep	CDS	18738208	18738264	.	+	2	Parent=Os10t0493600-03
Chr10	irgsp1_rep	CDS	18738426	18738460	.	+	2	Parent=Os10t0493600-03
Chr10	irgsp1_rep	CDS	18738798	18738901	.	+	0	Parent=Os10t0493600-03
Chr10	irgsp1_rep	CDS	18739051	18739126	.	+	1	Parent=Os10t0493600-03
Chr10	irgsp1_rep	CDS	18739226	18739284	.	+	0	Parent=Os10t0493600-03
Chr10	irgsp1_rep	CDS	18739364	18739429	.	+	1	Parent=Os10t0493600-03
Chr10	irgsp1_rep	CDS	18739519	18739602	.	+	1	Parent=Os10t0493600-03
Chr10	irgsp1_rep	CDS	18739684	18739748	.	+	1	Parent=Os10t0493600-03
Chr10	irgsp1_rep	CDS	18739839	18739921	.	+	2	Parent=Os10t0493600-03
Chr10	irgsp1_rep	CDS	18740013	18740101	.	+	0	Parent=Os10t0493600-03
Chr10	irgsp1_rep	CDS	18740186	18740237	.	+	1	Parent=Os10t0493600-03
Chr10	irgsp1_rep	CDS	18740347	18740487	.	+	0	Parent=Os10t0493600-03
Chr10	irgsp1_rep	CDS	18740576	18740659	.	+	0	Parent=Os10t0493600-03
Chr10	irgsp1_rep	three_prime_UTR	18740660	18740916	.	+	.	Parent=Os10t0493600-03
Chr10	irgsp1_rep	mRNA	18739899	18740952	.	+	.	ID=Os10t0493600-04;Name=Os10t0493600-04;Locus_id=Os10g0493600;Oryzabase Gene Symbol Synonym(s)=alphaGa1%2C alpha-Gal I;Oryzabase Gene Name Synonym(s)=Alpha-D-galactoside galactohydrolase%2C alpha-galactosidase 1%2C alpha-galactosidase I;Note=Similar to Alpha-galactosidase (Fragment).;Transcript_evidence=AK058373 (DDBJ%2C Best hit);ORF_evidence=O04944 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: cation binding (GO:0043169);InterPro=Glycosyl hydrolase%2C family 13%2C all-beta (IPR013780),Aldolase-type TIM barrel (IPR013785),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-014-G08;Oryzabase=19110;Expression=AK058373;TENOR=Os10t0493600-04;KEGG=Os10t0493600-04 (EC:3.2.1.22)
Chr10	irgsp1_rep	five_prime_UTR	18739899	18739900	.	+	.	Parent=Os10t0493600-04
Chr10	irgsp1_rep	CDS	18739901	18739921	.	+	0	Parent=Os10t0493600-04
Chr10	irgsp1_rep	CDS	18740013	18740101	.	+	0	Parent=Os10t0493600-04
Chr10	irgsp1_rep	CDS	18740186	18740237	.	+	1	Parent=Os10t0493600-04
Chr10	irgsp1_rep	CDS	18740347	18740487	.	+	0	Parent=Os10t0493600-04
Chr10	irgsp1_rep	CDS	18740576	18740659	.	+	0	Parent=Os10t0493600-04
Chr10	irgsp1_rep	three_prime_UTR	18740660	18740952	.	+	.	Parent=Os10t0493600-04
Chr10	irgsp1_rep	mRNA	18747265	18750250	.	+	.	ID=Os10t0493800-01;Name=Os10t0493800-01;Locus_id=Os10g0493800;Note=Small nuclear RNA activating complex (SNAPc)%2C subunit SNAP43 domain containing protein.;Transcript_evidence=AK108599 (DDBJ%2C Best hit);ORF_evidence=F2D1V4 (UniProt);InterPro=Small nuclear RNA activating complex (SNAPc)%2C subunit SNAP43 (IPR019188);NIAS_FLcDNA=002-146-E06;Expression=AK108599;TENOR=Os10t0493800-01;KEGG=Os10t0493800-01
Chr10	irgsp1_rep	five_prime_UTR	18747265	18747576	.	+	.	Parent=Os10t0493800-01
Chr10	irgsp1_rep	five_prime_UTR	18748049	18748069	.	+	.	Parent=Os10t0493800-01
Chr10	irgsp1_rep	CDS	18748070	18748126	.	+	0	Parent=Os10t0493800-01
Chr10	irgsp1_rep	CDS	18748206	18748332	.	+	0	Parent=Os10t0493800-01
Chr10	irgsp1_rep	CDS	18748424	18748537	.	+	2	Parent=Os10t0493800-01
Chr10	irgsp1_rep	CDS	18749025	18749223	.	+	2	Parent=Os10t0493800-01
Chr10	irgsp1_rep	CDS	18749341	18749386	.	+	1	Parent=Os10t0493800-01
Chr10	irgsp1_rep	CDS	18749561	18749636	.	+	0	Parent=Os10t0493800-01
Chr10	irgsp1_rep	CDS	18749765	18749997	.	+	2	Parent=Os10t0493800-01
Chr10	irgsp1_rep	three_prime_UTR	18749998	18750250	.	+	.	Parent=Os10t0493800-01
Chr10	irgsp1_rep	mRNA	18750657	18753568	.	-	.	ID=Os10t0493850-00;Name=Os10t0493850-00;Locus_id=Os10g0493850;Note=Hypothetical protein.;Transcript_evidence=tplb0029b01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0493850-00
Chr10	irgsp1_rep	five_prime_UTR	18753297	18753568	.	-	.	Parent=Os10t0493850-00
Chr10	irgsp1_rep	five_prime_UTR	18753156	18753193	.	-	.	Parent=Os10t0493850-00
Chr10	irgsp1_rep	five_prime_UTR	18752882	18753063	.	-	.	Parent=Os10t0493850-00
Chr10	irgsp1_rep	five_prime_UTR	18752253	18752391	.	-	.	Parent=Os10t0493850-00
Chr10	irgsp1_rep	five_prime_UTR	18751686	18751831	.	-	.	Parent=Os10t0493850-00
Chr10	irgsp1_rep	five_prime_UTR	18751455	18751470	.	-	.	Parent=Os10t0493850-00
Chr10	irgsp1_rep	CDS	18751182	18751454	.	-	0	Parent=Os10t0493850-00
Chr10	irgsp1_rep	CDS	18750657	18750954	.	-	0	Parent=Os10t0493850-00
Chr10	irgsp1_rep	mRNA	18752243	18753905	.	+	.	ID=Os10t0493900-01;Name=Os10t0493900-01;Locus_id=Os10g0493900;Note=Protein of unknown function DUF6%2C transmembrane domain containing protein.;Transcript_evidence=AK071193 (DDBJ%2C Best hit);ORF_evidence=XP_002882247.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=J023088F15;Expression=AK071193;TENOR=Os10t0493900-01;KEGG=Os10t0493900-01
Chr10	irgsp1_rep	CDS	18752243	18752392	.	+	0	Parent=Os10t0493900-01
Chr10	irgsp1_rep	CDS	18752883	18753054	.	+	0	Parent=Os10t0493900-01
Chr10	irgsp1_rep	CDS	18753146	18753206	.	+	2	Parent=Os10t0493900-01
Chr10	irgsp1_rep	CDS	18753310	18753418	.	+	1	Parent=Os10t0493900-01
Chr10	irgsp1_rep	three_prime_UTR	18753419	18753905	.	+	.	Parent=Os10t0493900-01
Chr10	irgsp1_rep	mRNA	18754188	18758086	.	-	.	ID=Os10t0494000-01;Name=Os10t0494000-01;Locus_id=Os10g0494000;Note=Protein of unknown function DUF789 family protein.;Transcript_evidence=AK106067 (DDBJ%2C Best hit),AK071373 (DDBJ%2C Best hit);ORF_evidence=A2Z8W3 (UniProt);InterPro=Protein of unknown function DUF789 (IPR008507);NIAS_FLcDNA=001-206-H01,J023097P16;TENOR=Os10t0494000-01
Chr10	irgsp1_rep	five_prime_UTR	18757822	18758086	.	-	.	Parent=Os10t0494000-01
Chr10	irgsp1_rep	CDS	18757705	18757821	.	-	0	Parent=Os10t0494000-01
Chr10	irgsp1_rep	CDS	18756924	18757141	.	-	0	Parent=Os10t0494000-01
Chr10	irgsp1_rep	CDS	18756623	18756824	.	-	1	Parent=Os10t0494000-01
Chr10	irgsp1_rep	CDS	18756460	18756545	.	-	0	Parent=Os10t0494000-01
Chr10	irgsp1_rep	CDS	18756074	18756165	.	-	1	Parent=Os10t0494000-01
Chr10	irgsp1_rep	CDS	18754532	18754773	.	-	2	Parent=Os10t0494000-01
Chr10	irgsp1_rep	three_prime_UTR	18754188	18754531	.	-	.	Parent=Os10t0494000-01
Chr10	irgsp1_rep	mRNA	18773314	18777390	.	+	.	ID=Os10t0494200-00;Name=Os10t0494200-00;Locus_id=Os10g0494200;Note=Similar to N-acetyl-gamma-glutamyl-phosphate reductase.;Transcript_evidence=tplb0009g02 (Wheat FLcDNA);ORF_evidence=B8BHN2 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: arginine biosynthetic process (GO:0006526),Biological Process: cellular amino acid biosynthetic process (GO:0008652),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: N-acetyl-gamma-glutamyl-phosphate reductase activity (GO:0003942),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620),Molecular Function: protein dimerization activity (GO:0046983),Molecular Function: NAD binding (GO:0051287);InterPro=Semialdehyde dehydrogenase%2C NAD-binding (IPR000534),N-acetyl-gamma-glutamyl-phosphate reductase%2C type 1 (IPR000706),Semialdehyde dehydrogenase%2C dimerisation domain (IPR012280),NAD(P)-binding domain (IPR016040),N-acetyl-gamma-glutamyl-phosphate reductase%2C active site (IPR023013);TENOR=Os10t0494200-00;KEGG=Os10t0494200-00 (EC:1.2.1.-%2C EC:1.2.1.38)
Chr10	irgsp1_rep	CDS	18773314	18773409	.	+	0	Parent=Os10t0494200-00
Chr10	irgsp1_rep	CDS	18774045	18774107	.	+	0	Parent=Os10t0494200-00
Chr10	irgsp1_rep	CDS	18774187	18774324	.	+	0	Parent=Os10t0494200-00
Chr10	irgsp1_rep	CDS	18774536	18774643	.	+	0	Parent=Os10t0494200-00
Chr10	irgsp1_rep	CDS	18774872	18774958	.	+	0	Parent=Os10t0494200-00
Chr10	irgsp1_rep	CDS	18775092	18775142	.	+	0	Parent=Os10t0494200-00
Chr10	irgsp1_rep	CDS	18775239	18775310	.	+	0	Parent=Os10t0494200-00
Chr10	irgsp1_rep	CDS	18775504	18775623	.	+	0	Parent=Os10t0494200-00
Chr10	irgsp1_rep	CDS	18775876	18775925	.	+	0	Parent=Os10t0494200-00
Chr10	irgsp1_rep	CDS	18776038	18776129	.	+	1	Parent=Os10t0494200-00
Chr10	irgsp1_rep	CDS	18776341	18776420	.	+	2	Parent=Os10t0494200-00
Chr10	irgsp1_rep	CDS	18776546	18776635	.	+	0	Parent=Os10t0494200-00
Chr10	irgsp1_rep	CDS	18776800	18776928	.	+	0	Parent=Os10t0494200-00
Chr10	irgsp1_rep	CDS	18777025	18777132	.	+	0	Parent=Os10t0494200-00
Chr10	irgsp1_rep	three_prime_UTR	18777133	18777390	.	+	.	Parent=Os10t0494200-00
Chr10	irgsp1_rep	mRNA	18784891	18790563	.	+	.	ID=Os10t0494300-01;Name=Os10t0494300-01;Locus_id=Os10g0494300;RAP-DB Gene Symbol Synonym(s)=ABCG26%2C OsABCG26;RAP-DB Gene Name Synonym(s)=ABC TRANSPORTER G FAMILY MEMBER 26%2C ABC transporter superfamily ABCG subgroup member 26;CGSNL Gene Symbol=ABCG26;CGSNL Gene Name=ABC TRANSPORTER G FAMILY MEMBER 26;Oryzabase Gene Symbol Synonym(s)=OsABCG26;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 26%2C ATP binding cassette transporter G26%2C ATP Binding Cassette G26;Note=ATP binding cassette G transporter%2C Regulation of male reproduction%2C Anther cuticle development;Transcript_evidence=AK072452;ORF_evidence=Q8LNT5;GO=Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Cellular Component: membrane (GO:0016020);InterPro=ABC transporter-like (IPR003439),P-loop containing nucleoside triphosphate hydrolase (IPR027417),AAA+ ATPase domain (IPR003593),ABC-2 type transporter (IPR013525),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=J023121D13;Manual Curation=November 11%2C 2015;Literature_PMID=26392263;Oryzabase=12003;Expression=AK072452;TENOR=Os10t0494300-01;KEGG=Os10t0494300-01
Chr10	irgsp1_rep	five_prime_UTR	18784891	18785004	.	+	.	Parent=Os10t0494300-01
Chr10	irgsp1_rep	CDS	18785005	18785451	.	+	0	Parent=Os10t0494300-01
Chr10	irgsp1_rep	CDS	18786840	18787129	.	+	0	Parent=Os10t0494300-01
Chr10	irgsp1_rep	CDS	18787522	18787693	.	+	1	Parent=Os10t0494300-01
Chr10	irgsp1_rep	CDS	18787789	18787911	.	+	0	Parent=Os10t0494300-01
Chr10	irgsp1_rep	CDS	18788013	18788141	.	+	0	Parent=Os10t0494300-01
Chr10	irgsp1_rep	CDS	18788242	18788436	.	+	0	Parent=Os10t0494300-01
Chr10	irgsp1_rep	CDS	18788565	18788651	.	+	0	Parent=Os10t0494300-01
Chr10	irgsp1_rep	CDS	18788744	18789016	.	+	0	Parent=Os10t0494300-01
Chr10	irgsp1_rep	CDS	18789228	18789335	.	+	0	Parent=Os10t0494300-01
Chr10	irgsp1_rep	CDS	18789950	18790297	.	+	0	Parent=Os10t0494300-01
Chr10	irgsp1_rep	three_prime_UTR	18790298	18790563	.	+	.	Parent=Os10t0494300-01
Chr10	irgsp1_rep	mRNA	18784962	18790307	.	-	.	ID=Os10t0494400-00;Name=Os10t0494400-00;Locus_id=Os10g0494400;Note=Hypothetical protein.;Transcript_evidence=tplb0024i20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0494400-00
Chr10	irgsp1_rep	five_prime_UTR	18790307	18790307	.	-	.	Parent=Os10t0494400-00
Chr10	irgsp1_rep	CDS	18789940	18790306	.	-	0	Parent=Os10t0494400-00
Chr10	irgsp1_rep	CDS	18789303	18789322	.	-	2	Parent=Os10t0494400-00
Chr10	irgsp1_rep	three_prime_UTR	18789224	18789302	.	-	.	Parent=Os10t0494400-00
Chr10	irgsp1_rep	three_prime_UTR	18788742	18789012	.	-	.	Parent=Os10t0494400-00
Chr10	irgsp1_rep	three_prime_UTR	18788559	18788649	.	-	.	Parent=Os10t0494400-00
Chr10	irgsp1_rep	three_prime_UTR	18788250	18788433	.	-	.	Parent=Os10t0494400-00
Chr10	irgsp1_rep	three_prime_UTR	18788013	18788149	.	-	.	Parent=Os10t0494400-00
Chr10	irgsp1_rep	three_prime_UTR	18787770	18787911	.	-	.	Parent=Os10t0494400-00
Chr10	irgsp1_rep	three_prime_UTR	18787519	18787677	.	-	.	Parent=Os10t0494400-00
Chr10	irgsp1_rep	three_prime_UTR	18786839	18787126	.	-	.	Parent=Os10t0494400-00
Chr10	irgsp1_rep	three_prime_UTR	18784962	18785450	.	-	.	Parent=Os10t0494400-00
Chr10	irgsp1_rep	mRNA	18794555	18798458	.	+	.	ID=Os10t0494500-01;Name=Os10t0494500-01;Locus_id=Os10g0494500;Oryzabase Gene Symbol Synonym(s)=OsRFP;Oryzabase Gene Name Synonym(s)=RING finger protein;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK318589 (DDBJ%2C Best hit);ORF_evidence=NP_001064945.2 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C RING-type%2C conserved site (IPR017907);NIAS_FLcDNA=J100032D04;Oryzabase=21169;TENOR=Os10t0494500-01;KEGG=Os10t0494500-01
Chr10	irgsp1_rep	five_prime_UTR	18794555	18794556	.	+	.	Parent=Os10t0494500-01
Chr10	irgsp1_rep	CDS	18794557	18794913	.	+	0	Parent=Os10t0494500-01
Chr10	irgsp1_rep	CDS	18796357	18796415	.	+	0	Parent=Os10t0494500-01
Chr10	irgsp1_rep	CDS	18797223	18798309	.	+	1	Parent=Os10t0494500-01
Chr10	irgsp1_rep	three_prime_UTR	18798310	18798458	.	+	.	Parent=Os10t0494500-01
Chr10	irgsp1_rep	mRNA	18798798	18805869	.	-	.	ID=Os10t0494800-01;Name=Os10t0494800-01;Locus_id=Os10g0494800;RAP-DB Gene Symbol Synonym(s)=OsKTN80a;RAP-DB Gene Name Synonym(s)=katanin P80a;Oryzabase Gene Symbol Synonym(s)=OsWD40-179%2C OsKTN80a;Oryzabase Gene Name Synonym(s)=katanin P80a%2C Katanin regulatory subunit P80a;Note=Katanin regulatory subunit P80a%2C Microtubule stabilizer%2C Root growth via regulating the cell elongation and division;Transcript_evidence=AK111538;ORF_evidence=Q337H9;GO=Biological Process: microtubule severing (GO:0051013),Molecular Function: protein binding (GO:0005515),Molecular Function: microtubule binding (GO:0008017),Cellular Component: katanin complex (GO:0008352);InterPro=WD40-repeat-containing domain superfamily (IPR036322),WD40/YVTN repeat-like-containing domain superfamily (IPR015943),Katanin p80 subunit B1 (IPR026962),WD40-repeat-containing domain (IPR017986),Katanin p80 subunit%2C C-terminal (IPR028021),WD40 repeat (IPR001680),G-protein beta WD-40 repeat (IPR020472),WD40 repeat%2C conserved site (IPR019775);NIAS_FLcDNA=J013038I11;Manual Curation=January 18%2C 2018;Literature_PMID=24450597;Oryzabase=10860;Expression=AK111538;TENOR=Os10t0494800-01;KEGG=Os10t0494800-01
Chr10	irgsp1_rep	five_prime_UTR	18805835	18805869	.	-	.	Parent=Os10t0494800-01
Chr10	irgsp1_rep	CDS	18805807	18805834	.	-	0	Parent=Os10t0494800-01
Chr10	irgsp1_rep	CDS	18803762	18803892	.	-	2	Parent=Os10t0494800-01
Chr10	irgsp1_rep	CDS	18803491	18803608	.	-	0	Parent=Os10t0494800-01
Chr10	irgsp1_rep	CDS	18803136	18803362	.	-	2	Parent=Os10t0494800-01
Chr10	irgsp1_rep	CDS	18802886	18802988	.	-	0	Parent=Os10t0494800-01
Chr10	irgsp1_rep	CDS	18802606	18802676	.	-	2	Parent=Os10t0494800-01
Chr10	irgsp1_rep	CDS	18801940	18801963	.	-	0	Parent=Os10t0494800-01
Chr10	irgsp1_rep	CDS	18801732	18801806	.	-	0	Parent=Os10t0494800-01
Chr10	irgsp1_rep	CDS	18801498	18801641	.	-	0	Parent=Os10t0494800-01
Chr10	irgsp1_rep	CDS	18801304	18801427	.	-	0	Parent=Os10t0494800-01
Chr10	irgsp1_rep	CDS	18800249	18801187	.	-	2	Parent=Os10t0494800-01
Chr10	irgsp1_rep	CDS	18800111	18800172	.	-	2	Parent=Os10t0494800-01
Chr10	irgsp1_rep	CDS	18799886	18800011	.	-	0	Parent=Os10t0494800-01
Chr10	irgsp1_rep	CDS	18799730	18799804	.	-	0	Parent=Os10t0494800-01
Chr10	irgsp1_rep	CDS	18799534	18799649	.	-	0	Parent=Os10t0494800-01
Chr10	irgsp1_rep	CDS	18799348	18799464	.	-	1	Parent=Os10t0494800-01
Chr10	irgsp1_rep	CDS	18799171	18799239	.	-	1	Parent=Os10t0494800-01
Chr10	irgsp1_rep	CDS	18798985	18799063	.	-	1	Parent=Os10t0494800-01
Chr10	irgsp1_rep	three_prime_UTR	18798798	18798984	.	-	.	Parent=Os10t0494800-01
Chr10	irgsp1_rep	mRNA	18808426	18811094	.	+	.	ID=Os10t0494950-00;Name=Os10t0494950-00;Locus_id=Os10g0494950;Note=Protein of unknown function DUF3615 domain containing protein.;Transcript_evidence=tplb0061e09 (Wheat FLcDNA);ORF_evidence=NP_001176221.1 (RefSeq);InterPro=Protein of unknown function DUF3615 (IPR022059);TENOR=Os10t0494950-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	18808426	18808946	.	+	0	Parent=Os10t0494950-00
Chr10	irgsp1_rep	CDS	18809720	18809900	.	+	1	Parent=Os10t0494950-00
Chr10	irgsp1_rep	CDS	18809969	18810173	.	+	0	Parent=Os10t0494950-00
Chr10	irgsp1_rep	CDS	18810916	18811094	.	+	2	Parent=Os10t0494950-00
Chr10	irgsp1_rep	mRNA	18813618	18819650	.	+	.	ID=Os10t0495000-01;Name=Os10t0495000-01;Locus_id=Os10g0495000;Note=K Homology%2C type 1%2C subgroup domain containing protein.;Transcript_evidence=AK066573 (DDBJ%2C Best hit);ORF_evidence=Q7G2G8 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=K Homology (IPR004087),K Homology%2C type 1 (IPR004088),K Homology%2C type 1%2C subgroup (IPR018111);NIAS_FLcDNA=J013072P14;Expression=AK066573;TENOR=Os10t0495000-01;KEGG=Os10t0495000-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	18813618	18813862	.	+	.	Parent=Os10t0495000-01
Chr10	irgsp1_rep	five_prime_UTR	18815783	18815795	.	+	.	Parent=Os10t0495000-01
Chr10	irgsp1_rep	CDS	18815796	18816419	.	+	0	Parent=Os10t0495000-01
Chr10	irgsp1_rep	CDS	18816836	18817258	.	+	0	Parent=Os10t0495000-01
Chr10	irgsp1_rep	CDS	18817351	18817596	.	+	0	Parent=Os10t0495000-01
Chr10	irgsp1_rep	CDS	18817706	18818371	.	+	0	Parent=Os10t0495000-01
Chr10	irgsp1_rep	CDS	18818810	18818865	.	+	0	Parent=Os10t0495000-01
Chr10	irgsp1_rep	CDS	18818949	18819042	.	+	1	Parent=Os10t0495000-01
Chr10	irgsp1_rep	CDS	18819141	18819320	.	+	0	Parent=Os10t0495000-01
Chr10	irgsp1_rep	three_prime_UTR	18819321	18819650	.	+	.	Parent=Os10t0495000-01
Chr10	irgsp1_rep	mRNA	18817318	18817835	.	-	.	ID=Os10t0495050-00;Name=Os10t0495050-00;Locus_id=Os10g0495050;Note=Non-protein coding transcript.;Transcript_evidence=EU946286 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0495050-00
Chr10	irgsp1_rep	exon	18817318	18817835	.	-	.	Parent=Os10t0495050-00
Chr10	irgsp1_rep	mRNA	18821456	18825084	.	+	.	ID=Os10t0495075-00;Name=Os10t0495075-00;Locus_id=Os10g0495075;Note=Hypothetical protein.;Transcript_evidence=tplb0040d05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0495075-00
Chr10	irgsp1_rep	five_prime_UTR	18821456	18821599	.	+	.	Parent=Os10t0495075-00
Chr10	irgsp1_rep	five_prime_UTR	18821809	18822001	.	+	.	Parent=Os10t0495075-00
Chr10	irgsp1_rep	five_prime_UTR	18823519	18824424	.	+	.	Parent=Os10t0495075-00
Chr10	irgsp1_rep	CDS	18824425	18825084	.	+	0	Parent=Os10t0495075-00
Chr10	irgsp1_rep	mRNA	18823677	18825328	.	-	.	ID=Os10t0495100-01;Name=Os10t0495100-01;Locus_id=Os10g0495100;Oryzabase Gene Symbol Synonym(s)=PPR454%2C PPR10%2C PPR2;Oryzabase Gene Name Synonym(s)=pentatricopeptide repeat (PPR)-encoding gene 454%2C pentatricopeptide repeat-containing protein 454%2C pentatricopeptide repeat protein 10%2C pentatricopeptide repeat motif containing gene 2%2C PPR motif-containing gene 2;Note=Similar to Fertility restorer.;Transcript_evidence=AK101819 (DDBJ%2C Best hit);ORF_evidence=NP_001064949.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033067E15;Oryzabase=19634;Expression=AK101819;TENOR=Os10t0495100-01;KEGG=Os10t0495100-01
Chr10	irgsp1_rep	five_prime_UTR	18825073	18825328	.	-	.	Parent=Os10t0495100-01
Chr10	irgsp1_rep	CDS	18823687	18825072	.	-	0	Parent=Os10t0495100-01
Chr10	irgsp1_rep	three_prime_UTR	18823677	18823686	.	-	.	Parent=Os10t0495100-01
Chr10	irgsp1_rep	mRNA	18823689	18825272	.	-	.	ID=Os10t0495100-02;Name=Os10t0495100-02;Locus_id=Os10g0495100;Oryzabase Gene Symbol Synonym(s)=PPR454%2C PPR10%2C PPR2;Oryzabase Gene Name Synonym(s)=pentatricopeptide repeat (PPR)-encoding gene 454%2C pentatricopeptide repeat-containing protein 454%2C pentatricopeptide repeat protein 10%2C pentatricopeptide repeat motif containing gene 2%2C PPR motif-containing gene 2;Note=Similar to Fertility restorer.;Transcript_evidence=AK059574 (DDBJ%2C Best hit);ORF_evidence=NP_001064949.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-030-A06;Oryzabase=19634;TENOR=Os10t0495100-02
Chr10	irgsp1_rep	five_prime_UTR	18825073	18825272	.	-	.	Parent=Os10t0495100-02
Chr10	irgsp1_rep	CDS	18823689	18825072	.	-	0	Parent=Os10t0495100-02
Chr10	irgsp1_rep	mRNA	18832249	18836049	.	-	.	ID=Os10t0495200-01;Name=Os10t0495200-01;Locus_id=Os10g0495200;RAP-DB Gene Symbol Synonym(s)=Rf4%2C PPR782a%2C PPR9;RAP-DB Gene Name Synonym(s)=fertility restorer 4%2C pentatricopeptide repeat (PPR)-encoding gene 782a;Oryzabase Gene Symbol Synonym(s)=Rf4%2C Rf-4%2C PPR782a%2C PPR9%2C PPR3;Oryzabase Gene Name Synonym(s)=restorer-of-fertility 4%2C fertility restorer 4%2C pentatricopeptide repeat (PPR)-encoding gene 782a%2C pentatricopeptide repeat-containing protein 782a%2C pentatricopeptide repeat protein 9%2C pentatricopeptide repeat motif containing gene 3%2C PPR motif-containing gene 3;Note=Pentatricopeptide repeat protein%2C Fertility restoration (Nipponbare: non-restorer line%2C IR24: restorer line);Transcript_evidence=AK287434;ORF_evidence=Q337H7;GO=Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical domain superfamily (IPR011990),Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J043012F24;Manual Curation=June 19%2C 2020;Literature_PMID=26224557,24728538;Oryzabase=12342;TENOR=Os10t0495200-01;KEGG=Os10t0495200-01;Subcellular location=mitochondrion (GO:0005739)
Chr10	irgsp1_rep	five_prime_UTR	18835959	18836049	.	-	.	Parent=Os10t0495200-01
Chr10	irgsp1_rep	CDS	18833610	18835958	.	-	0	Parent=Os10t0495200-01
Chr10	irgsp1_rep	three_prime_UTR	18833489	18833609	.	-	.	Parent=Os10t0495200-01
Chr10	irgsp1_rep	three_prime_UTR	18832249	18832534	.	-	.	Parent=Os10t0495200-01
Chr10	irgsp1_rep	mRNA	18833387	18836046	.	-	.	ID=Os10t0495200-02;Name=Os10t0495200-02;Locus_id=Os10g0495200;Oryzabase Gene Symbol Synonym(s)=Rf4%2C Rf-4%2C PPR782a%2C PPR9%2C PPR3;Oryzabase Gene Name Synonym(s)=restorer-of-fertility 4%2C fertility restorer 4%2C pentatricopeptide repeat (PPR)-encoding gene 782a%2C pentatricopeptide repeat-containing protein 782a%2C pentatricopeptide repeat protein 9%2C pentatricopeptide repeat motif containing gene 3%2C PPR motif-containing gene 3;Note=Similar to Fertility restorer.;Transcript_evidence=AK102771 (DDBJ%2C Best hit);ORF_evidence=Q8LNU1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033107G16;Oryzabase=12342;Expression=AK102771;TENOR=Os10t0495200-02;KEGG=Os10t0495200-02
Chr10	irgsp1_rep	five_prime_UTR	18835959	18836046	.	-	.	Parent=Os10t0495200-02
Chr10	irgsp1_rep	CDS	18833610	18835958	.	-	0	Parent=Os10t0495200-02
Chr10	irgsp1_rep	three_prime_UTR	18833387	18833609	.	-	.	Parent=Os10t0495200-02
Chr10	irgsp1_rep	mRNA	18837749	18843204	.	-	.	ID=Os10t0495300-01;Name=Os10t0495300-01;Locus_id=Os10g0495300;Note=Similar to ALG2-interacting protein X.;Transcript_evidence=AK103856 (DDBJ%2C Best hit);ORF_evidence=NP_001152549.1 (RefSeq);InterPro=BRO1 domain (IPR004328);NIAS_FLcDNA=J033148O10;TENOR=Os10t0495300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	18843085	18843204	.	-	.	Parent=Os10t0495300-01
Chr10	irgsp1_rep	CDS	18842413	18843084	.	-	0	Parent=Os10t0495300-01
Chr10	irgsp1_rep	CDS	18840883	18841833	.	-	0	Parent=Os10t0495300-01
Chr10	irgsp1_rep	CDS	18840630	18840719	.	-	0	Parent=Os10t0495300-01
Chr10	irgsp1_rep	CDS	18840471	18840539	.	-	0	Parent=Os10t0495300-01
Chr10	irgsp1_rep	CDS	18839561	18839701	.	-	0	Parent=Os10t0495300-01
Chr10	irgsp1_rep	CDS	18839235	18839283	.	-	0	Parent=Os10t0495300-01
Chr10	irgsp1_rep	CDS	18838679	18838782	.	-	2	Parent=Os10t0495300-01
Chr10	irgsp1_rep	CDS	18837988	18838563	.	-	0	Parent=Os10t0495300-01
Chr10	irgsp1_rep	three_prime_UTR	18837749	18837987	.	-	.	Parent=Os10t0495300-01
Chr10	irgsp1_rep	mRNA	18837760	18840720	.	-	.	ID=Os10t0495300-02;Name=Os10t0495300-02;Locus_id=Os10g0495300;Note=Similar to ALG2-interacting protein X.;Transcript_evidence=AK059840 (DDBJ%2C Best hit);ORF_evidence=NP_001152549.1 (RefSeq);NIAS_FLcDNA=006-206-D06;Expression=AK059840;TENOR=Os10t0495300-02;KEGG=Os10t0495300-02
Chr10	irgsp1_rep	five_prime_UTR	18840720	18840720	.	-	.	Parent=Os10t0495300-02
Chr10	irgsp1_rep	CDS	18840630	18840719	.	-	0	Parent=Os10t0495300-02
Chr10	irgsp1_rep	CDS	18840471	18840539	.	-	0	Parent=Os10t0495300-02
Chr10	irgsp1_rep	CDS	18839561	18839701	.	-	0	Parent=Os10t0495300-02
Chr10	irgsp1_rep	CDS	18839235	18839283	.	-	0	Parent=Os10t0495300-02
Chr10	irgsp1_rep	CDS	18838679	18838782	.	-	2	Parent=Os10t0495300-02
Chr10	irgsp1_rep	CDS	18837988	18838563	.	-	0	Parent=Os10t0495300-02
Chr10	irgsp1_rep	three_prime_UTR	18837760	18837987	.	-	.	Parent=Os10t0495300-02
Chr10	irgsp1_rep	mRNA	18837746	18839269	.	-	.	ID=Os10t0495300-03;Name=Os10t0495300-03;Locus_id=Os10g0495300;Note=Similar to ALG2-interacting protein X.;Transcript_evidence=AK060102 (DDBJ%2C Best hit);ORF_evidence=NP_001152549.1 (RefSeq);NIAS_FLcDNA=006-308-A07;Expression=AK060102;TENOR=Os10t0495300-03;KEGG=Os10t0495300-03
Chr10	irgsp1_rep	five_prime_UTR	18839269	18839269	.	-	.	Parent=Os10t0495300-03
Chr10	irgsp1_rep	CDS	18839235	18839268	.	-	0	Parent=Os10t0495300-03
Chr10	irgsp1_rep	CDS	18838679	18838782	.	-	2	Parent=Os10t0495300-03
Chr10	irgsp1_rep	CDS	18837988	18838563	.	-	0	Parent=Os10t0495300-03
Chr10	irgsp1_rep	three_prime_UTR	18837746	18837987	.	-	.	Parent=Os10t0495300-03
Chr10	irgsp1_rep	mRNA	18845293	18847382	.	-	.	ID=Os10t0495400-01;Name=Os10t0495400-01;Locus_id=Os10g0495400;Oryzabase Gene Symbol Synonym(s)=PPR458%2C PPR7%2C PPR4;Oryzabase Gene Name Synonym(s)=pentatricopeptide repeat (PPR)-encoding gene 458%2C pentatricopeptide repeat-containing protein 458%2C pentatricopeptide repeat protein 7%2C pentatricopeptide repeat motif containing gene 4%2C PPR motif-containing gene 4;Note=Hypothetical conserved gene.;Transcript_evidence=AK243598 (DDBJ%2C Best hit);ORF_evidence=B8BHN8 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J100084K24;Oryzabase=19635;TENOR=Os10t0495400-01;KEGG=Os10t0495400-01
Chr10	irgsp1_rep	CDS	18847116	18847382	.	-	0	Parent=Os10t0495400-01
Chr10	irgsp1_rep	three_prime_UTR	18846654	18847115	.	-	.	Parent=Os10t0495400-01
Chr10	irgsp1_rep	three_prime_UTR	18846457	18846574	.	-	.	Parent=Os10t0495400-01
Chr10	irgsp1_rep	three_prime_UTR	18845293	18845651	.	-	.	Parent=Os10t0495400-01
Chr10	irgsp1_rep	mRNA	18847139	18848521	.	+	.	ID=Os10t0495416-00;Name=Os10t0495416-00;Locus_id=Os10g0495416;Note=Hypothetical protein.;Transcript_evidence=tplb0058l18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0495416-00
Chr10	irgsp1_rep	five_prime_UTR	18847139	18847860	.	+	.	Parent=Os10t0495416-00
Chr10	irgsp1_rep	CDS	18847861	18848202	.	+	0	Parent=Os10t0495416-00
Chr10	irgsp1_rep	three_prime_UTR	18848203	18848521	.	+	.	Parent=Os10t0495416-00
Chr10	irgsp1_rep	mRNA	18850191	18850475	.	-	.	ID=Os10t0495433-00;Name=Os10t0495433-00;Locus_id=Os10g0495433;Note=BRO1 domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7G2G3 (UniProt);InterPro=BRO1 domain (IPR004328);TENOR=Os10t0495433-00
Chr10	irgsp1_rep	CDS	18850191	18850475	.	-	0	Parent=Os10t0495433-00
Chr10	irgsp1_rep	mRNA	18850536	18851149	.	-	.	ID=Os10t0495466-00;Name=Os10t0495466-00;Locus_id=Os10g0495466;Note=BRO1 domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3C636 (UniProt);InterPro=BRO1 domain (IPR004328);TENOR=Os10t0495466-00
Chr10	irgsp1_rep	CDS	18850941	18851149	.	-	0	Parent=Os10t0495466-00
Chr10	irgsp1_rep	CDS	18850536	18850884	.	-	1	Parent=Os10t0495466-00
Chr10	irgsp1_rep	mRNA	18852254	18857340	.	-	.	ID=Os10t0495500-01;Name=Os10t0495500-01;Locus_id=Os10g0495500;Note=Hypothetical conserved gene.;Transcript_evidence=AK242915 (DDBJ%2C Best hit);ORF_evidence=Q8LNU5 (UniProt);InterPro=Uncharacterised protein family UPF0120 (IPR005343);NIAS_FLcDNA=J090083I15;TENOR=Os10t0495500-01;KEGG=Os10t0495500-01
Chr10	irgsp1_rep	five_prime_UTR	18857244	18857340	.	-	.	Parent=Os10t0495500-01
Chr10	irgsp1_rep	CDS	18857222	18857243	.	-	0	Parent=Os10t0495500-01
Chr10	irgsp1_rep	CDS	18857009	18857133	.	-	2	Parent=Os10t0495500-01
Chr10	irgsp1_rep	CDS	18855471	18855542	.	-	0	Parent=Os10t0495500-01
Chr10	irgsp1_rep	CDS	18854865	18855374	.	-	0	Parent=Os10t0495500-01
Chr10	irgsp1_rep	CDS	18854443	18854757	.	-	0	Parent=Os10t0495500-01
Chr10	irgsp1_rep	CDS	18854293	18854349	.	-	0	Parent=Os10t0495500-01
Chr10	irgsp1_rep	CDS	18853791	18854117	.	-	0	Parent=Os10t0495500-01
Chr10	irgsp1_rep	CDS	18853505	18853711	.	-	0	Parent=Os10t0495500-01
Chr10	irgsp1_rep	CDS	18853341	18853427	.	-	0	Parent=Os10t0495500-01
Chr10	irgsp1_rep	CDS	18853161	18853255	.	-	0	Parent=Os10t0495500-01
Chr10	irgsp1_rep	CDS	18852808	18852942	.	-	1	Parent=Os10t0495500-01
Chr10	irgsp1_rep	CDS	18852401	18852722	.	-	1	Parent=Os10t0495500-01
Chr10	irgsp1_rep	three_prime_UTR	18852254	18852400	.	-	.	Parent=Os10t0495500-01
Chr10	irgsp1_rep	mRNA	18857871	18869428	.	-	.	ID=Os10t0495600-01;Name=Os10t0495600-01;Locus_id=Os10g0495600;Note=Similar to DNA-directed RNA polymerase.;Transcript_evidence=AK318583 (DDBJ%2C Best hit);ORF_evidence=B9G6G0 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899),Molecular Function: ribonucleoside binding (GO:0032549);InterPro=DNA-directed RNA polymerase%2C subunit 2%2C domain 6 (IPR007120),RNA polymerase Rpb2%2C domain 2 (IPR007642),RNA polymerase%2C beta subunit%2C protrusion (IPR007644),RNA polymerase Rpb2%2C domain 3 (IPR007645),RNA polymerase I%2C Rpa2 specific (IPR009674),DNA-directed RNA polymerase%2C subunit 2 (IPR015712);NIAS_FLcDNA=J090099O18;TENOR=Os10t0495600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	18869393	18869428	.	-	.	Parent=Os10t0495600-01
Chr10	irgsp1_rep	CDS	18869215	18869392	.	-	0	Parent=Os10t0495600-01
Chr10	irgsp1_rep	CDS	18868756	18868829	.	-	2	Parent=Os10t0495600-01
Chr10	irgsp1_rep	CDS	18868523	18868642	.	-	0	Parent=Os10t0495600-01
Chr10	irgsp1_rep	CDS	18867646	18867722	.	-	0	Parent=Os10t0495600-01
Chr10	irgsp1_rep	CDS	18867317	18867380	.	-	1	Parent=Os10t0495600-01
Chr10	irgsp1_rep	CDS	18867138	18867208	.	-	0	Parent=Os10t0495600-01
Chr10	irgsp1_rep	CDS	18866937	18867014	.	-	1	Parent=Os10t0495600-01
Chr10	irgsp1_rep	CDS	18866801	18866846	.	-	1	Parent=Os10t0495600-01
Chr10	irgsp1_rep	CDS	18866206	18866386	.	-	0	Parent=Os10t0495600-01
Chr10	irgsp1_rep	CDS	18866067	18866119	.	-	2	Parent=Os10t0495600-01
Chr10	irgsp1_rep	CDS	18865908	18865981	.	-	0	Parent=Os10t0495600-01
Chr10	irgsp1_rep	CDS	18865698	18865815	.	-	1	Parent=Os10t0495600-01
Chr10	irgsp1_rep	CDS	18864846	18864930	.	-	0	Parent=Os10t0495600-01
Chr10	irgsp1_rep	CDS	18863518	18863630	.	-	2	Parent=Os10t0495600-01
Chr10	irgsp1_rep	CDS	18862504	18862631	.	-	0	Parent=Os10t0495600-01
Chr10	irgsp1_rep	CDS	18862349	18862428	.	-	1	Parent=Os10t0495600-01
Chr10	irgsp1_rep	CDS	18862018	18862259	.	-	2	Parent=Os10t0495600-01
Chr10	irgsp1_rep	CDS	18861764	18861928	.	-	0	Parent=Os10t0495600-01
Chr10	irgsp1_rep	CDS	18861524	18861688	.	-	0	Parent=Os10t0495600-01
Chr10	irgsp1_rep	CDS	18861327	18861401	.	-	0	Parent=Os10t0495600-01
Chr10	irgsp1_rep	CDS	18860834	18860937	.	-	0	Parent=Os10t0495600-01
Chr10	irgsp1_rep	CDS	18860637	18860751	.	-	1	Parent=Os10t0495600-01
Chr10	irgsp1_rep	three_prime_UTR	18859930	18860636	.	-	.	Parent=Os10t0495600-01
Chr10	irgsp1_rep	three_prime_UTR	18859677	18859820	.	-	.	Parent=Os10t0495600-01
Chr10	irgsp1_rep	three_prime_UTR	18859151	18859363	.	-	.	Parent=Os10t0495600-01
Chr10	irgsp1_rep	three_prime_UTR	18858746	18858979	.	-	.	Parent=Os10t0495600-01
Chr10	irgsp1_rep	three_prime_UTR	18857871	18858542	.	-	.	Parent=Os10t0495600-01
Chr10	irgsp1_rep	mRNA	18869929	18872891	.	+	.	ID=Os10t0495900-01;Name=Os10t0495900-01;Locus_id=Os10g0495900;Note=Protein of unknown function DUF1218 family protein.;Transcript_evidence=AK318604 (DDBJ%2C Best hit);ORF_evidence=B6TXE3 (UniProt);InterPro=Protein of unknown function DUF1218 (IPR009606);NIAS_FLcDNA=J100073O04;TENOR=Os10t0495900-01;KEGG=Os10t0495900-01
Chr10	irgsp1_rep	five_prime_UTR	18869929	18869995	.	+	.	Parent=Os10t0495900-01
Chr10	irgsp1_rep	CDS	18869996	18870088	.	+	0	Parent=Os10t0495900-01
Chr10	irgsp1_rep	CDS	18870201	18870406	.	+	0	Parent=Os10t0495900-01
Chr10	irgsp1_rep	CDS	18872481	18872733	.	+	1	Parent=Os10t0495900-01
Chr10	irgsp1_rep	three_prime_UTR	18872734	18872891	.	+	.	Parent=Os10t0495900-01
Chr10	irgsp1_rep	mRNA	18873532	18875014	.	-	.	ID=Os10t0496000-02;Name=Os10t0496000-02;Locus_id=Os10g0496000;CGSNL Gene Symbol=DOF27;CGSNL Gene Name=DNA BINDING WITH ONE FINGER 27;Oryzabase Gene Symbol Synonym(s)=OsDof27%2C Dof27%2C OsDof-27;Oryzabase Gene Name Synonym(s)=Dof zinc factor 27%2C Dof transcription factor 27;Note=Zinc finger%2C Dof-type family protein.;Transcript_evidence=AK070563 (DDBJ%2C Best hit),AK109091 (DDBJ%2C Best hit);ORF_evidence=B8BHN5 (UniProt);NIAS_FLcDNA=J023060H13,002-155-A04;Oryzabase=8815;Expression=AK070563;TENOR=Os10t0496000-02;KEGG=Os10t0496000-02
Chr10	irgsp1_rep	five_prime_UTR	18874632	18875014	.	-	.	Parent=Os10t0496000-02
Chr10	irgsp1_rep	CDS	18874530	18874631	.	-	0	Parent=Os10t0496000-02
Chr10	irgsp1_rep	CDS	18873810	18874451	.	-	0	Parent=Os10t0496000-02
Chr10	irgsp1_rep	three_prime_UTR	18873532	18873809	.	-	.	Parent=Os10t0496000-02
Chr10	irgsp1_rep	mRNA	18890230	18890582	.	-	.	ID=Os10t0496550-00;Name=Os10t0496550-00;Locus_id=Os10g0496550;Note=Conserved hypothetical protein.;Transcript_evidence=EU950260 (DDBJ);ORF_evidence=Q8W3D6 (UniProt);TENOR=Os10t0496550-00
Chr10	irgsp1_rep	CDS	18890478	18890582	.	-	0	Parent=Os10t0496550-00
Chr10	irgsp1_rep	three_prime_UTR	18890230	18890477	.	-	.	Parent=Os10t0496550-00
Chr10	irgsp1_rep	mRNA	18897963	18899115	.	+	.	ID=Os10t0496600-01;Name=Os10t0496600-01;Locus_id=Os10g0496600;Note=Conserved hypothetical protein.;Transcript_evidence=AK243588 (DDBJ%2C Best hit);ORF_evidence=NP_001176224.1 (RefSeq);NIAS_FLcDNA=J100083D08;TENOR=Os10t0496600-01;KEGG=Os10t0496600-01
Chr10	irgsp1_rep	five_prime_UTR	18897963	18898533	.	+	.	Parent=Os10t0496600-01
Chr10	irgsp1_rep	CDS	18898534	18899004	.	+	0	Parent=Os10t0496600-01
Chr10	irgsp1_rep	three_prime_UTR	18899005	18899115	.	+	.	Parent=Os10t0496600-01
Chr10	irgsp1_rep	mRNA	18900302	18904014	.	+	.	ID=Os10t0496900-01;Name=Os10t0496900-01;Locus_id=Os10g0496900;CGSNL Gene Symbol=FGL;CGSNL Gene Name=FADED GREEN LEAF;Oryzabase Gene Symbol Synonym(s)=fgl(fl)%2C fl%2C fgl%2C OsPorB%2C PoPA%2C PORA%2C porA%2C OsPORA%2C PORB%2C OsPORB;Oryzabase Gene Name Synonym(s)=faded green leaf%2C NADPH: protochlorophyllide oxidoreductase B%2C NADPH-dependent protochlorophyllide oxidoreductase A;Note=Similar to Protochlorophyllide reductase B%2C chloroplastic.;Transcript_evidence=AK068143 (DDBJ%2C Best hit);ORF_evidence=Q8W3D9 (UniProt);NIAS_FLcDNA=J013134C06;Oryzabase=884;TENOR=Os10t0496900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	18900302	18900373	.	+	.	Parent=Os10t0496900-01
Chr10	irgsp1_rep	CDS	18900374	18900436	.	+	0	Parent=Os10t0496900-01
Chr10	irgsp1_rep	CDS	18900575	18900778	.	+	0	Parent=Os10t0496900-01
Chr10	irgsp1_rep	three_prime_UTR	18900779	18902391	.	+	.	Parent=Os10t0496900-01
Chr10	irgsp1_rep	three_prime_UTR	18903024	18904014	.	+	.	Parent=Os10t0496900-01
Chr10	irgsp1_rep	mRNA	18900290	18904022	.	+	.	ID=Os10t0496900-02;Name=Os10t0496900-02;Locus_id=Os10g0496900;RAP-DB Gene Symbol Synonym(s)=FGL%2C OsPorB%2C OsPORB%2C fgl(fl)%2C fl%2C fgl;RAP-DB Gene Name Synonym(s)=FADED GREEN LEAF%2C NADPH: protochlorophyllide oxidoreductase B%2C faded green leaf;CGSNL Gene Symbol=FGL;CGSNL Gene Name=FADED GREEN LEAF;Oryzabase Gene Symbol Synonym(s)=fgl(fl)%2C fl%2C fgl%2C OsPorB%2C PoPA%2C PORA%2C porA%2C OsPORA%2C PORB%2C OsPORB;Oryzabase Gene Name Synonym(s)=faded green leaf%2C NADPH: protochlorophyllide oxidoreductase B%2C NADPH-dependent protochlorophyllide oxidoreductase A;Note=NADPH: protochlorophyllide oxidoreductase%2C Chlorophyll synthesis;Transcript_evidence=Inferred from literature;ORF_evidence=Q8W3D9;GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: protochlorophyllide reductase activity (GO:0016630);InterPro=Glucose/ribitol dehydrogenase (IPR002347),Light-dependent protochlorophyllide reductase (IPR005979),Short-chain dehydrogenase/reductase SDR (IPR002198),NAD(P)-binding domain (IPR016040);Manual Curation=May 12%2C 2014;Literature_PMID=23289852;Oryzabase=884
Chr10	irgsp1_rep	five_prime_UTR	18900290	18900373	.	+	.	Parent=Os10t0496900-02
Chr10	irgsp1_rep	CDS	18900374	18900436	.	+	0	Parent=Os10t0496900-02
Chr10	irgsp1_rep	CDS	18900575	18900661	.	+	0	Parent=Os10t0496900-02
Chr10	irgsp1_rep	CDS	18901860	18902391	.	+	0	Parent=Os10t0496900-02
Chr10	irgsp1_rep	CDS	18903024	18903550	.	+	2	Parent=Os10t0496900-02
Chr10	irgsp1_rep	three_prime_UTR	18903551	18904022	.	+	.	Parent=Os10t0496900-02
Chr10	irgsp1_rep	mRNA	18906524	18915302	.	+	.	ID=Os10t0497000-01;Name=Os10t0497000-01;Locus_id=Os10g0497000;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=AK120408 (DDBJ%2C Best hit);ORF_evidence=B8BHP3 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Wings apart-like protein (IPR022771);NIAS_FLcDNA=J013091M08;Expression=AK120408;TENOR=Os10t0497000-01;KEGG=Os10t0497000-01
Chr10	irgsp1_rep	five_prime_UTR	18906524	18906873	.	+	.	Parent=Os10t0497000-01
Chr10	irgsp1_rep	CDS	18906874	18907355	.	+	0	Parent=Os10t0497000-01
Chr10	irgsp1_rep	CDS	18908681	18908780	.	+	1	Parent=Os10t0497000-01
Chr10	irgsp1_rep	CDS	18909134	18909467	.	+	0	Parent=Os10t0497000-01
Chr10	irgsp1_rep	CDS	18909738	18909850	.	+	2	Parent=Os10t0497000-01
Chr10	irgsp1_rep	CDS	18910419	18910547	.	+	0	Parent=Os10t0497000-01
Chr10	irgsp1_rep	CDS	18910728	18910821	.	+	0	Parent=Os10t0497000-01
Chr10	irgsp1_rep	CDS	18910924	18911007	.	+	2	Parent=Os10t0497000-01
Chr10	irgsp1_rep	CDS	18911250	18911878	.	+	2	Parent=Os10t0497000-01
Chr10	irgsp1_rep	CDS	18912644	18912933	.	+	0	Parent=Os10t0497000-01
Chr10	irgsp1_rep	CDS	18913080	18913224	.	+	1	Parent=Os10t0497000-01
Chr10	irgsp1_rep	CDS	18913858	18913955	.	+	0	Parent=Os10t0497000-01
Chr10	irgsp1_rep	CDS	18914057	18914138	.	+	1	Parent=Os10t0497000-01
Chr10	irgsp1_rep	CDS	18914827	18914910	.	+	0	Parent=Os10t0497000-01
Chr10	irgsp1_rep	three_prime_UTR	18914911	18915302	.	+	.	Parent=Os10t0497000-01
Chr10	irgsp1_rep	mRNA	18917046	18920329	.	+	.	ID=Os10t0497100-01;Name=Os10t0497100-01;Locus_id=Os10g0497100;Note=Similar to 1-acyl-sn-glycerol-3-phosphate acyltransferase 1%2C chloroplast precursor (EC 2.3.1.51) (Lysophosphatidyl acyltransferase 1). Splice isoform 2.;Transcript_evidence=AK108318 (DDBJ%2C Best hit);ORF_evidence=Q9LLY4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: phospholipid biosynthetic process (GO:0008654),Cellular Component: membrane (GO:0016020),Molecular Function: 1-acylglycerol-3-phosphate O-acyltransferase activity (GO:0003841),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Phospholipid/glycerol acyltransferase (IPR002123),1-acyl-sn-glycerol-3-phosphate acyltransferase (IPR004552);NIAS_FLcDNA=002-141-G11;Expression=AK108318;TENOR=Os10t0497100-01;KEGG=Os10t0497100-01 (EC:2.3.1.51)
Chr10	irgsp1_rep	five_prime_UTR	18917046	18917246	.	+	.	Parent=Os10t0497100-01
Chr10	irgsp1_rep	CDS	18917247	18917322	.	+	0	Parent=Os10t0497100-01
Chr10	irgsp1_rep	CDS	18917429	18917614	.	+	2	Parent=Os10t0497100-01
Chr10	irgsp1_rep	CDS	18918225	18918631	.	+	2	Parent=Os10t0497100-01
Chr10	irgsp1_rep	CDS	18918979	18919080	.	+	0	Parent=Os10t0497100-01
Chr10	irgsp1_rep	CDS	18919187	18919414	.	+	0	Parent=Os10t0497100-01
Chr10	irgsp1_rep	three_prime_UTR	18919415	18919492	.	+	.	Parent=Os10t0497100-01
Chr10	irgsp1_rep	three_prime_UTR	18920153	18920329	.	+	.	Parent=Os10t0497100-01
Chr10	irgsp1_rep	mRNA	18933270	18938172	.	-	.	ID=Os10t0497200-00;Name=Os10t0497200-00;Locus_id=Os10g0497200;Note=Hypothetical protein.;Transcript_evidence=tplb0036h15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0497200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	18937845	18938172	.	-	.	Parent=Os10t0497200-00
Chr10	irgsp1_rep	five_prime_UTR	18936465	18937434	.	-	.	Parent=Os10t0497200-00
Chr10	irgsp1_rep	CDS	18935885	18936464	.	-	0	Parent=Os10t0497200-00
Chr10	irgsp1_rep	CDS	18933270	18933409	.	-	2	Parent=Os10t0497200-00
Chr10	irgsp1_rep	mRNA	18935690	18942571	.	+	.	ID=Os10t0497300-01;Name=Os10t0497300-01;Locus_id=Os10g0497300;Oryzabase Gene Symbol Synonym(s)=PPR794%2C PPR6%2C PPR6-794%2C PPR5;Oryzabase Gene Name Synonym(s)=a 794-aa protein with 17 PPR motifs%2C pentatricopeptide repeat protein 6%2C pentatricopeptide repeat protein 794%2C pentatricopeptide repeat motif containing gene 5%2C PPR motif-containing gene 5;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK064770 (DDBJ%2C Best hit);ORF_evidence=Q76C26 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013000A16;Oryzabase=19645;Expression=AK064770;TENOR=Os10t0497300-01;KEGG=Os10t0497300-01
Chr10	irgsp1_rep	five_prime_UTR	18935690	18935795	.	+	.	Parent=Os10t0497300-01
Chr10	irgsp1_rep	CDS	18935796	18938180	.	+	0	Parent=Os10t0497300-01
Chr10	irgsp1_rep	three_prime_UTR	18938181	18938272	.	+	.	Parent=Os10t0497300-01
Chr10	irgsp1_rep	three_prime_UTR	18938681	18938780	.	+	.	Parent=Os10t0497300-01
Chr10	irgsp1_rep	three_prime_UTR	18939135	18939468	.	+	.	Parent=Os10t0497300-01
Chr10	irgsp1_rep	three_prime_UTR	18939655	18939859	.	+	.	Parent=Os10t0497300-01
Chr10	irgsp1_rep	three_prime_UTR	18940442	18940570	.	+	.	Parent=Os10t0497300-01
Chr10	irgsp1_rep	three_prime_UTR	18940752	18940845	.	+	.	Parent=Os10t0497300-01
Chr10	irgsp1_rep	three_prime_UTR	18940948	18941031	.	+	.	Parent=Os10t0497300-01
Chr10	irgsp1_rep	three_prime_UTR	18941272	18942028	.	+	.	Parent=Os10t0497300-01
Chr10	irgsp1_rep	three_prime_UTR	18942110	18942571	.	+	.	Parent=Os10t0497300-01
Chr10	irgsp1_rep	mRNA	18946448	18949595	.	+	.	ID=Os10t0497366-00;Name=Os10t0497366-00;Locus_id=Os10g0497366;Note=Similar to Fertility restorer.;Transcript_evidence=AB112809 (DDBJ%2C Best hit);ORF_evidence=Q769D0 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os10t0497366-00;KEGG=Os10t0497366-00
Chr10	irgsp1_rep	five_prime_UTR	18946448	18946560	.	+	.	Parent=Os10t0497366-00
Chr10	irgsp1_rep	CDS	18946561	18947766	.	+	0	Parent=Os10t0497366-00
Chr10	irgsp1_rep	three_prime_UTR	18947767	18948034	.	+	.	Parent=Os10t0497366-00
Chr10	irgsp1_rep	three_prime_UTR	18949006	18949595	.	+	.	Parent=Os10t0497366-00
Chr10	irgsp1_rep	mRNA	18946715	18949529	.	-	.	ID=Os10t0497400-00;Name=Os10t0497400-00;Locus_id=Os10g0497400;Note=Non-protein coding transcript.;Transcript_evidence=tplb0023j11 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os10t0497400-00
Chr10	irgsp1_rep	exon	18949002	18949529	.	-	.	Parent=Os10t0497400-00
Chr10	irgsp1_rep	exon	18946715	18948034	.	-	.	Parent=Os10t0497400-00
Chr10	irgsp1_rep	mRNA	18951634	18953700	.	+	.	ID=Os10t0497432-01;Name=Os10t0497432-01;Locus_id=Os10g0497432;CGSNL Gene Symbol=RF1;CGSNL Gene Name=RESTORATION OF FERTILITY 1;Oryzabase Gene Symbol Synonym(s)=Rf1 (Rf-1)%2C rf-1%2C PPR791%2C PPR8-1%2C Rf-1%2C Rf1%2C Rf-1A%2C Rf5%2C Rf1a%2C RF5%2C Rf5(t)*(Rf(t)*)%2C RF1A%2C PPR6;Oryzabase Gene Name Synonym(s)=Pollen fertility restoration1%2C Pollen fertility restoration-1%2C "Rf1 protein%2C mitochondrial precursor"%2C "Rf1 protein%2C mitochondrial"%2C "Protein Rf1%2C mitochondrial"%2C fertility restorer 5%2C Pentatricopeptide Repeat Protein RF5%2C pentatricopeptide repeat protein 791%2C Fertile revertant from II-32A%2C Pollen fertility restoration-5%2C RESTORATION OF FERTILITY 5%2C RESTORATION OF FERTILITY 1A%2C pentatricopeptide repeat motif containing gene 6%2C PPR motif-containing gene 6;Note=Similar to PPR protein.;Transcript_evidence=AK107042 (DDBJ%2C Best hit);ORF_evidence=Q2PPE8 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=002-121-C05;Oryzabase=885;Expression=AK107042;TENOR=Os10t0497432-01;KEGG=Os10t0497432-01
Chr10	irgsp1_rep	five_prime_UTR	18951634	18951725	.	+	.	Parent=Os10t0497432-01
Chr10	irgsp1_rep	CDS	18951726	18952526	.	+	0	Parent=Os10t0497432-01
Chr10	irgsp1_rep	three_prime_UTR	18952527	18953700	.	+	.	Parent=Os10t0497432-01
Chr10	irgsp1_rep	mRNA	18951797	18954091	.	-	.	ID=Os10t0497466-00;Name=Os10t0497466-00;Locus_id=Os10g0497466;Note=Non-protein coding transcript.;Transcript_evidence=tplb0040d05 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os10t0497466-00
Chr10	irgsp1_rep	exon	18953920	18954091	.	-	.	Parent=Os10t0497466-00
Chr10	irgsp1_rep	exon	18952781	18953025	.	-	.	Parent=Os10t0497466-00
Chr10	irgsp1_rep	exon	18951797	18952514	.	-	.	Parent=Os10t0497466-00
Chr10	irgsp1_rep	mRNA	18955115	18957024	.	+	.	ID=Os10t0497500-01;Name=Os10t0497500-01;Locus_id=Os10g0497500;Note=K Homology%2C type 1%2C subgroup domain containing protein.;Transcript_evidence=AK107213 (DDBJ%2C Best hit);ORF_evidence=A3C631 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=K Homology (IPR004087),K Homology%2C type 1 (IPR004088),K Homology%2C type 1%2C subgroup (IPR018111);NIAS_FLcDNA=002-125-C04;TENOR=Os10t0497500-01;KEGG=Os10t0497500-01
Chr10	irgsp1_rep	five_prime_UTR	18955115	18955254	.	+	.	Parent=Os10t0497500-01
Chr10	irgsp1_rep	CDS	18955255	18955302	.	+	0	Parent=Os10t0497500-01
Chr10	irgsp1_rep	CDS	18955637	18955720	.	+	0	Parent=Os10t0497500-01
Chr10	irgsp1_rep	CDS	18955813	18956058	.	+	0	Parent=Os10t0497500-01
Chr10	irgsp1_rep	CDS	18956168	18956227	.	+	0	Parent=Os10t0497500-01
Chr10	irgsp1_rep	three_prime_UTR	18956228	18957024	.	+	.	Parent=Os10t0497500-01
Chr10	irgsp1_rep	mRNA	18955769	18956297	.	-	.	ID=Os10t0497550-00;Name=Os10t0497550-00;Locus_id=Os10g0497550;Note=Non-protein coding transcript.;Transcript_evidence=EU946286 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0497550-00
Chr10	irgsp1_rep	exon	18955769	18956297	.	-	.	Parent=Os10t0497550-00
Chr10	irgsp1_rep	mRNA	18970490	18975230	.	+	.	ID=Os10t0497600-01;Name=Os10t0497600-01;Locus_id=Os10g0497600;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK103003 (DDBJ%2C Best hit);ORF_evidence=Q1EPK4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033116G17;Expression=AK103003;TENOR=Os10t0497600-01;KEGG=Os10t0497600-01
Chr10	irgsp1_rep	five_prime_UTR	18970490	18970990	.	+	.	Parent=Os10t0497600-01
Chr10	irgsp1_rep	five_prime_UTR	18971418	18971434	.	+	.	Parent=Os10t0497600-01
Chr10	irgsp1_rep	CDS	18971435	18972102	.	+	0	Parent=Os10t0497600-01
Chr10	irgsp1_rep	CDS	18972195	18972299	.	+	1	Parent=Os10t0497600-01
Chr10	irgsp1_rep	CDS	18973474	18973596	.	+	1	Parent=Os10t0497600-01
Chr10	irgsp1_rep	CDS	18973713	18973883	.	+	1	Parent=Os10t0497600-01
Chr10	irgsp1_rep	CDS	18974057	18974186	.	+	1	Parent=Os10t0497600-01
Chr10	irgsp1_rep	CDS	18974439	18974648	.	+	0	Parent=Os10t0497600-01
Chr10	irgsp1_rep	CDS	18974738	18974860	.	+	0	Parent=Os10t0497600-01
Chr10	irgsp1_rep	three_prime_UTR	18974861	18975230	.	+	.	Parent=Os10t0497600-01
Chr10	irgsp1_rep	mRNA	18970514	18975208	.	+	.	ID=Os10t0497600-02;Name=Os10t0497600-02;Locus_id=Os10g0497600;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK073182 (DDBJ%2C Best hit);ORF_evidence=Q1EPK4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033001F09;Expression=AK073182;TENOR=Os10t0497600-02;KEGG=Os10t0497600-02
Chr10	irgsp1_rep	five_prime_UTR	18970514	18970990	.	+	.	Parent=Os10t0497600-02
Chr10	irgsp1_rep	five_prime_UTR	18971418	18971434	.	+	.	Parent=Os10t0497600-02
Chr10	irgsp1_rep	CDS	18971435	18972102	.	+	0	Parent=Os10t0497600-02
Chr10	irgsp1_rep	CDS	18972195	18972299	.	+	1	Parent=Os10t0497600-02
Chr10	irgsp1_rep	CDS	18973474	18973596	.	+	1	Parent=Os10t0497600-02
Chr10	irgsp1_rep	CDS	18973713	18973883	.	+	1	Parent=Os10t0497600-02
Chr10	irgsp1_rep	CDS	18974057	18974186	.	+	1	Parent=Os10t0497600-02
Chr10	irgsp1_rep	CDS	18974439	18974648	.	+	0	Parent=Os10t0497600-02
Chr10	irgsp1_rep	CDS	18974738	18974860	.	+	0	Parent=Os10t0497600-02
Chr10	irgsp1_rep	three_prime_UTR	18974861	18975208	.	+	.	Parent=Os10t0497600-02
Chr10	irgsp1_rep	mRNA	18976009	18979062	.	+	.	ID=Os10t0497700-01;Name=Os10t0497700-01;Locus_id=Os10g0497700;CGSNL Gene Symbol=BC1L9;CGSNL Gene Name=BRITTLE CULM-LIKE 9;Oryzabase Gene Symbol Synonym(s)=OsBC1L9%2C OsPCS2%2C PCS2;Oryzabase Gene Name Synonym(s)=BRITTLE CULM1-like 9%2C Phytochelatin synthase 2;Note=Similar to Phytochelatin synthetase.;Transcript_evidence=AK071225 (DDBJ%2C Best hit);ORF_evidence=Q8W3E8 (UniProt);InterPro=Glycosyl-phosphatidyl inositol-anchored%2C plant (IPR006918),COBRA-like (IPR017391);NIAS_FLcDNA=J023087K13;Oryzabase=22989;Expression=AK071225;TENOR=Os10t0497700-01;KEGG=Os10t0497700-01
Chr10	irgsp1_rep	five_prime_UTR	18976009	18976075	.	+	.	Parent=Os10t0497700-01
Chr10	irgsp1_rep	CDS	18976076	18976151	.	+	0	Parent=Os10t0497700-01
Chr10	irgsp1_rep	CDS	18976343	18976422	.	+	2	Parent=Os10t0497700-01
Chr10	irgsp1_rep	CDS	18977010	18977472	.	+	0	Parent=Os10t0497700-01
Chr10	irgsp1_rep	CDS	18977895	18978054	.	+	2	Parent=Os10t0497700-01
Chr10	irgsp1_rep	CDS	18978158	18978432	.	+	1	Parent=Os10t0497700-01
Chr10	irgsp1_rep	CDS	18978615	18978838	.	+	2	Parent=Os10t0497700-01
Chr10	irgsp1_rep	three_prime_UTR	18978839	18979062	.	+	.	Parent=Os10t0497700-01
Chr10	irgsp1_rep	mRNA	18976011	18978206	.	+	.	ID=Os10t0497700-02;Name=Os10t0497700-02;Locus_id=Os10g0497700;CGSNL Gene Symbol=BC1L9;CGSNL Gene Name=BRITTLE CULM-LIKE 9;Oryzabase Gene Symbol Synonym(s)=OsBC1L9%2C OsPCS2%2C PCS2;Oryzabase Gene Name Synonym(s)=BRITTLE CULM1-like 9%2C Phytochelatin synthase 2;Note=Similar to COBRA-like protein 4.;Transcript_evidence=AK102632 (DDBJ%2C Best hit);ORF_evidence=Q8W3E8 (UniProt);InterPro=Glycosyl-phosphatidyl inositol-anchored%2C plant (IPR006918);NIAS_FLcDNA=J033099L21;Oryzabase=22989;Expression=AK102632;TENOR=Os10t0497700-02;KEGG=Os10t0497700-02
Chr10	irgsp1_rep	five_prime_UTR	18976011	18976075	.	+	.	Parent=Os10t0497700-02
Chr10	irgsp1_rep	CDS	18976076	18976151	.	+	0	Parent=Os10t0497700-02
Chr10	irgsp1_rep	CDS	18976343	18976422	.	+	2	Parent=Os10t0497700-02
Chr10	irgsp1_rep	CDS	18977010	18977472	.	+	0	Parent=Os10t0497700-02
Chr10	irgsp1_rep	CDS	18977895	18978054	.	+	2	Parent=Os10t0497700-02
Chr10	irgsp1_rep	CDS	18978158	18978206	.	+	1	Parent=Os10t0497700-02
Chr10	irgsp1_rep	mRNA	18976329	18978820	.	-	.	ID=Os10t0497750-00;Name=Os10t0497750-00;Locus_id=Os10g0497750;Note=Hypothetical protein.;Transcript_evidence=tplb0046p06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0497750-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	18978549	18978820	.	-	.	Parent=Os10t0497750-00
Chr10	irgsp1_rep	five_prime_UTR	18978137	18978374	.	-	.	Parent=Os10t0497750-00
Chr10	irgsp1_rep	five_prime_UTR	18977893	18978035	.	-	.	Parent=Os10t0497750-00
Chr10	irgsp1_rep	five_prime_UTR	18977275	18977468	.	-	.	Parent=Os10t0497750-00
Chr10	irgsp1_rep	CDS	18977017	18977274	.	-	0	Parent=Os10t0497750-00
Chr10	irgsp1_rep	three_prime_UTR	18976994	18977016	.	-	.	Parent=Os10t0497750-00
Chr10	irgsp1_rep	three_prime_UTR	18976329	18976405	.	-	.	Parent=Os10t0497750-00
Chr10	irgsp1_rep	mRNA	18981364	18985210	.	+	.	ID=Os10t0497800-01;Name=Os10t0497800-01;Locus_id=Os10g0497800;Note=Similar to Prolyl 4-hydroxylase%2C alpha subunit-like protein.;Transcript_evidence=AK120584 (DDBJ%2C Best hit);ORF_evidence=NP_001159002.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706),Molecular Function: L-ascorbic acid binding (GO:0031418);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123),Prolyl 4-hydroxylase%2C alpha subunit (IPR006620);NIAS_FLcDNA=J013136I05;Expression=AK120584;TENOR=Os10t0497800-01;KEGG=Os10t0497800-01 (EC:1.14.11.2)
Chr10	irgsp1_rep	five_prime_UTR	18981364	18981454	.	+	.	Parent=Os10t0497800-01
Chr10	irgsp1_rep	CDS	18981455	18981741	.	+	0	Parent=Os10t0497800-01
Chr10	irgsp1_rep	CDS	18981869	18981959	.	+	1	Parent=Os10t0497800-01
Chr10	irgsp1_rep	CDS	18982651	18982748	.	+	0	Parent=Os10t0497800-01
Chr10	irgsp1_rep	CDS	18982833	18982930	.	+	1	Parent=Os10t0497800-01
Chr10	irgsp1_rep	CDS	18984173	18984302	.	+	2	Parent=Os10t0497800-01
Chr10	irgsp1_rep	CDS	18984391	18984578	.	+	1	Parent=Os10t0497800-01
Chr10	irgsp1_rep	CDS	18984677	18984750	.	+	2	Parent=Os10t0497800-01
Chr10	irgsp1_rep	three_prime_UTR	18984751	18984774	.	+	.	Parent=Os10t0497800-01
Chr10	irgsp1_rep	three_prime_UTR	18984921	18985210	.	+	.	Parent=Os10t0497800-01
Chr10	irgsp1_rep	mRNA	18986705	18988981	.	+	.	ID=Os10t0497900-01;Name=Os10t0497900-01;Locus_id=Os10g0497900;Note=Similar to Lanthionine synthetase C-like protein%2C expressed.;Transcript_evidence=AK073596 (DDBJ%2C Best hit);ORF_evidence=Q337H0 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Lanthionine synthetase C-like (IPR007822),Six-hairpin glycosidase-like (IPR008928),LanC-like protein%2C eukaryotic (IPR020464);NIAS_FLcDNA=J033048L17;TENOR=Os10t0497900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	18986705	18986843	.	+	.	Parent=Os10t0497900-01
Chr10	irgsp1_rep	CDS	18986844	18986981	.	+	0	Parent=Os10t0497900-01
Chr10	irgsp1_rep	CDS	18987097	18987275	.	+	0	Parent=Os10t0497900-01
Chr10	irgsp1_rep	CDS	18987396	18987513	.	+	1	Parent=Os10t0497900-01
Chr10	irgsp1_rep	CDS	18987636	18987752	.	+	0	Parent=Os10t0497900-01
Chr10	irgsp1_rep	CDS	18987856	18988170	.	+	0	Parent=Os10t0497900-01
Chr10	irgsp1_rep	CDS	18988386	18988724	.	+	0	Parent=Os10t0497900-01
Chr10	irgsp1_rep	three_prime_UTR	18988725	18988981	.	+	.	Parent=Os10t0497900-01
Chr10	irgsp1_rep	mRNA	18986712	18988944	.	+	.	ID=Os10t0497900-02;Name=Os10t0497900-02;Locus_id=Os10g0497900;Note=Similar to Lanthionine synthetase C-like protein%2C expressed.;Transcript_evidence=AK064225 (DDBJ%2C Best hit);ORF_evidence=Q337H0 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Lanthionine synthetase C-like (IPR007822),Six-hairpin glycosidase-like (IPR008928),LanC-like protein%2C eukaryotic (IPR020464);NIAS_FLcDNA=002-104-G06;Expression=AK064225;TENOR=Os10t0497900-02;KEGG=Os10t0497900-02
Chr10	irgsp1_rep	five_prime_UTR	18986712	18986843	.	+	.	Parent=Os10t0497900-02
Chr10	irgsp1_rep	CDS	18986844	18986981	.	+	0	Parent=Os10t0497900-02
Chr10	irgsp1_rep	CDS	18987097	18987275	.	+	0	Parent=Os10t0497900-02
Chr10	irgsp1_rep	CDS	18987402	18987513	.	+	1	Parent=Os10t0497900-02
Chr10	irgsp1_rep	CDS	18987636	18987752	.	+	0	Parent=Os10t0497900-02
Chr10	irgsp1_rep	CDS	18987856	18988170	.	+	0	Parent=Os10t0497900-02
Chr10	irgsp1_rep	CDS	18988386	18988724	.	+	0	Parent=Os10t0497900-02
Chr10	irgsp1_rep	three_prime_UTR	18988725	18988944	.	+	.	Parent=Os10t0497900-02
Chr10	irgsp1_rep	mRNA	18989312	18991116	.	-	.	ID=Os10t0498000-01;Name=Os10t0498000-01;Locus_id=Os10g0498000;Note=Similar to Epoxide hydrolase.;Transcript_evidence=AK071470 (DDBJ%2C Best hit);ORF_evidence=D8L7V9 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Epoxide hydrolase-like (IPR000639);NIAS_FLcDNA=J023096B06;Expression=AK071470;TENOR=Os10t0498000-01;KEGG=Os10t0498000-01
Chr10	irgsp1_rep	five_prime_UTR	18991102	18991116	.	-	.	Parent=Os10t0498000-01
Chr10	irgsp1_rep	CDS	18991029	18991101	.	-	0	Parent=Os10t0498000-01
Chr10	irgsp1_rep	CDS	18990712	18990929	.	-	2	Parent=Os10t0498000-01
Chr10	irgsp1_rep	CDS	18990280	18990441	.	-	0	Parent=Os10t0498000-01
Chr10	irgsp1_rep	CDS	18989902	18990137	.	-	0	Parent=Os10t0498000-01
Chr10	irgsp1_rep	CDS	18989526	18989772	.	-	1	Parent=Os10t0498000-01
Chr10	irgsp1_rep	three_prime_UTR	18989312	18989525	.	-	.	Parent=Os10t0498000-01
Chr10	irgsp1_rep	mRNA	18994725	18996793	.	+	.	ID=Os10t0498100-01;Name=Os10t0498100-01;Locus_id=Os10g0498100;Note=Alpha/beta hydrolase fold-1 domain containing protein.;Transcript_evidence=AK071187 (DDBJ%2C Best hit);ORF_evidence=Q8W3F2 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Alpha/beta hydrolase fold-1 (IPR000073),Epoxide hydrolase-like (IPR000639);NIAS_FLcDNA=J023086M24;TENOR=Os10t0498100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	18994725	18994862	.	+	.	Parent=Os10t0498100-01
Chr10	irgsp1_rep	CDS	18994863	18995792	.	+	0	Parent=Os10t0498100-01
Chr10	irgsp1_rep	three_prime_UTR	18995793	18996793	.	+	.	Parent=Os10t0498100-01
Chr10	irgsp1_rep	mRNA	18998799	19000906	.	+	.	ID=Os10t0498200-01;Name=Os10t0498200-01;Locus_id=Os10g0498200;Note=Epoxide hydrolase family protein.;Transcript_evidence=AK059099 (DDBJ%2C Best hit),AK059733 (DDBJ%2C Best hit),AK120570 (DDBJ%2C Best hit);ORF_evidence=B6TD17 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Alpha/beta hydrolase fold-1 (IPR000073),Epoxide hydrolase-like (IPR000639);NIAS_FLcDNA=001-022-C08,006-201-H06,J013134D09;Expression=AK059099;TENOR=Os10t0498200-01;KEGG=Os10t0498200-01
Chr10	irgsp1_rep	five_prime_UTR	18998799	18998882	.	+	.	Parent=Os10t0498200-01
Chr10	irgsp1_rep	CDS	18998883	18998967	.	+	0	Parent=Os10t0498200-01
Chr10	irgsp1_rep	CDS	18999055	18999272	.	+	2	Parent=Os10t0498200-01
Chr10	irgsp1_rep	CDS	18999869	19000030	.	+	0	Parent=Os10t0498200-01
Chr10	irgsp1_rep	CDS	19000113	19000348	.	+	0	Parent=Os10t0498200-01
Chr10	irgsp1_rep	CDS	19000436	19000691	.	+	1	Parent=Os10t0498200-01
Chr10	irgsp1_rep	three_prime_UTR	19000692	19000906	.	+	.	Parent=Os10t0498200-01
Chr10	irgsp1_rep	mRNA	19002214	19004174	.	+	.	ID=Os10t0498300-01;Name=Os10t0498300-01;Locus_id=Os10g0498300;Note=Similar to Epoxide hydrolase.;Transcript_evidence=AK060338 (DDBJ%2C Best hit);ORF_evidence=D8L7V9 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Alpha/beta hydrolase fold-1 (IPR000073),Epoxide hydrolase-like (IPR000639);NIAS_FLcDNA=001-008-C11;Expression=AK060338;TENOR=Os10t0498300-01;KEGG=Os10t0498300-01
Chr10	irgsp1_rep	five_prime_UTR	19002214	19002255	.	+	.	Parent=Os10t0498300-01
Chr10	irgsp1_rep	CDS	19002256	19002382	.	+	0	Parent=Os10t0498300-01
Chr10	irgsp1_rep	CDS	19002476	19002693	.	+	2	Parent=Os10t0498300-01
Chr10	irgsp1_rep	CDS	19003216	19003377	.	+	0	Parent=Os10t0498300-01
Chr10	irgsp1_rep	CDS	19003455	19003690	.	+	0	Parent=Os10t0498300-01
Chr10	irgsp1_rep	CDS	19003778	19004033	.	+	1	Parent=Os10t0498300-01
Chr10	irgsp1_rep	three_prime_UTR	19004034	19004174	.	+	.	Parent=Os10t0498300-01
Chr10	irgsp1_rep	mRNA	19005928	19007634	.	+	.	ID=Os10t0498500-00;Name=Os10t0498500-00;Locus_id=Os10g0498500;Note=Epoxide hydrolase-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001064968.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Epoxide hydrolase-like (IPR000639);TENOR=Os10t0498500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	19005928	19006027	.	+	0	Parent=Os10t0498500-00
Chr10	irgsp1_rep	CDS	19006178	19006395	.	+	2	Parent=Os10t0498500-00
Chr10	irgsp1_rep	CDS	19007055	19007290	.	+	0	Parent=Os10t0498500-00
Chr10	irgsp1_rep	CDS	19007379	19007634	.	+	1	Parent=Os10t0498500-00
Chr10	irgsp1_rep	mRNA	19009701	19014274	.	-	.	ID=Os10t0498600-01;Name=Os10t0498600-01;Locus_id=Os10g0498600;RAP-DB Gene Symbol Synonym(s)=Du1%2C du1;RAP-DB Gene Name Synonym(s)=dull endosperm1;CGSNL Gene Symbol=DU1;CGSNL Gene Name=DULL ENDOSPERM 1;Oryzabase Gene Symbol Synonym(s)=du1;Oryzabase Gene Name Synonym(s)=dull endosperm1%2C dull endosperm 1%2C dull endosperm-1;Note=A member of pre-mRNA processing (Prp1) family%2C Regulation of starch biosynthesis;Transcript_evidence=AK071378 (truncated),Inferred from literature;ORF_evidence=Q8W3F7;GO=Biological Process: mRNA splicing%2C via spliceosome (GO:0000398),Biological Process: RNA processing (GO:0006396),Molecular Function: protein binding (GO:0005515),Cellular Component: nucleus (GO:0005634);InterPro=Ubiquitin-like domain superfamily (IPR029071),Tetratricopeptide-like helical domain superfamily (IPR011990),PRP1 splicing factor%2C N-terminal (IPR010491),Tetratricopeptide repeat-containing domain (IPR013026),HAT (Half-A-TPR) repeat (IPR003107),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J023091C22 (truncated);Manual Curation=March 8%2C 2018;Literature_PMID=17579813;Oryzabase=873;Expression=AK071378;TENOR=Os10t0498600-01;KEGG=Os10t0498600-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	19014219	19014274	.	-	.	Parent=Os10t0498600-01
Chr10	irgsp1_rep	CDS	19011099	19014218	.	-	0	Parent=Os10t0498600-01
Chr10	irgsp1_rep	three_prime_UTR	19011072	19011098	.	-	.	Parent=Os10t0498600-01
Chr10	irgsp1_rep	three_prime_UTR	19009701	19010152	.	-	.	Parent=Os10t0498600-01
Chr10	irgsp1_rep	mRNA	19015819	19025378	.	+	.	ID=Os10t0498700-01;Name=Os10t0498700-01;Locus_id=Os10g0498700;RAP-DB Gene Symbol Synonym(s)=OsSFR6;RAP-DB Gene Name Synonym(s)=SENSITIVE TO FREEZING-6;CGSNL Gene Symbol=SFR6;CGSNL Gene Name=SENSITIVE TO FREEZING-6;Oryzabase Gene Symbol Synonym(s)=OsMed16_1%2C Med16_1%2C OsSFR6;Oryzabase Gene Name Synonym(s)=Mediator 16_1;Note=Orthologue of Arabidopsis SENSITIVE TO FREEZING-6 (AtSFR6)%2C Osmotic stress and freezing tolerance;Transcript_evidence=AK101061;ORF_evidence=Q7G2F7;NIAS_FLcDNA=J033022G24;Manual Curation=September 7%2C 2020;Literature_PMID=21585388;Oryzabase=20976;Expression=AK101061;TENOR=Os10t0498700-01;KEGG=Os10t0498700-01
Chr10	irgsp1_rep	five_prime_UTR	19015819	19016085	.	+	.	Parent=Os10t0498700-01
Chr10	irgsp1_rep	CDS	19016086	19016510	.	+	0	Parent=Os10t0498700-01
Chr10	irgsp1_rep	CDS	19017197	19017265	.	+	1	Parent=Os10t0498700-01
Chr10	irgsp1_rep	CDS	19017448	19017536	.	+	1	Parent=Os10t0498700-01
Chr10	irgsp1_rep	CDS	19017707	19017819	.	+	2	Parent=Os10t0498700-01
Chr10	irgsp1_rep	CDS	19018004	19018105	.	+	0	Parent=Os10t0498700-01
Chr10	irgsp1_rep	CDS	19018557	19018644	.	+	0	Parent=Os10t0498700-01
Chr10	irgsp1_rep	CDS	19018743	19019342	.	+	2	Parent=Os10t0498700-01
Chr10	irgsp1_rep	CDS	19019747	19020365	.	+	2	Parent=Os10t0498700-01
Chr10	irgsp1_rep	CDS	19020450	19020529	.	+	1	Parent=Os10t0498700-01
Chr10	irgsp1_rep	CDS	19021155	19021237	.	+	2	Parent=Os10t0498700-01
Chr10	irgsp1_rep	CDS	19021777	19022013	.	+	0	Parent=Os10t0498700-01
Chr10	irgsp1_rep	CDS	19022462	19022639	.	+	0	Parent=Os10t0498700-01
Chr10	irgsp1_rep	CDS	19022795	19023309	.	+	2	Parent=Os10t0498700-01
Chr10	irgsp1_rep	CDS	19023721	19023897	.	+	0	Parent=Os10t0498700-01
Chr10	irgsp1_rep	CDS	19024366	19024749	.	+	0	Parent=Os10t0498700-01
Chr10	irgsp1_rep	CDS	19024866	19025012	.	+	0	Parent=Os10t0498700-01
Chr10	irgsp1_rep	three_prime_UTR	19025013	19025378	.	+	.	Parent=Os10t0498700-01
Chr10	irgsp1_rep	mRNA	19019896	19025378	.	+	.	ID=Os10t0498700-02;Name=Os10t0498700-02;Locus_id=Os10g0498700;CGSNL Gene Symbol=SFR6;CGSNL Gene Name=SENSITIVE TO FREEZING-6;Oryzabase Gene Symbol Synonym(s)=OsMed16_1%2C Med16_1%2C OsSFR6;Oryzabase Gene Name Synonym(s)=Mediator 16_1;Note=Similar to predicted protein.;Transcript_evidence=AK102105 (DDBJ%2C Best hit);ORF_evidence=NP_192401.5 (RefSeq);NIAS_FLcDNA=J033084D07;Oryzabase=20976;Expression=AK102105;TENOR=Os10t0498700-02;KEGG=Os10t0498700-02
Chr10	irgsp1_rep	CDS	19019896	19020365	.	+	0	Parent=Os10t0498700-02
Chr10	irgsp1_rep	CDS	19020450	19020529	.	+	1	Parent=Os10t0498700-02
Chr10	irgsp1_rep	CDS	19021155	19021237	.	+	2	Parent=Os10t0498700-02
Chr10	irgsp1_rep	CDS	19021777	19022013	.	+	0	Parent=Os10t0498700-02
Chr10	irgsp1_rep	CDS	19022462	19022639	.	+	0	Parent=Os10t0498700-02
Chr10	irgsp1_rep	CDS	19022795	19023309	.	+	2	Parent=Os10t0498700-02
Chr10	irgsp1_rep	CDS	19023721	19023897	.	+	0	Parent=Os10t0498700-02
Chr10	irgsp1_rep	CDS	19024366	19024749	.	+	0	Parent=Os10t0498700-02
Chr10	irgsp1_rep	CDS	19024866	19025012	.	+	0	Parent=Os10t0498700-02
Chr10	irgsp1_rep	three_prime_UTR	19025013	19025378	.	+	.	Parent=Os10t0498700-02
Chr10	irgsp1_rep	mRNA	19031851	19033542	.	+	.	ID=Os10t0498800-01;Name=Os10t0498800-01;Locus_id=Os10g0498800;Note=Protein of unknown function DUF974 family protein.;Transcript_evidence=AK058916 (DDBJ%2C Best hit);ORF_evidence=Q8LNH7 (UniProt);InterPro=Protein of unknown function DUF974 (IPR010378);NIAS_FLcDNA=001-009-A09;Expression=AK058916;TENOR=Os10t0498800-01;KEGG=Os10t0498800-01
Chr10	irgsp1_rep	CDS	19031851	19031880	.	+	0	Parent=Os10t0498800-01
Chr10	irgsp1_rep	CDS	19032408	19032452	.	+	0	Parent=Os10t0498800-01
Chr10	irgsp1_rep	CDS	19032972	19033070	.	+	0	Parent=Os10t0498800-01
Chr10	irgsp1_rep	CDS	19033308	19033328	.	+	0	Parent=Os10t0498800-01
Chr10	irgsp1_rep	three_prime_UTR	19033329	19033542	.	+	.	Parent=Os10t0498800-01
Chr10	irgsp1_rep	mRNA	19033909	19036321	.	-	.	ID=Os10t0498900-01;Name=Os10t0498900-01;Locus_id=Os10g0498900;Note=Similar to Microtubule-associated protein EB1-like protein.;Transcript_evidence=AK108732 (DDBJ%2C Best hit);ORF_evidence=NP_001148619.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: microtubule binding (GO:0008017);InterPro=Calponin homology domain (IPR001715),EB1%2C C-terminal (IPR004953);NIAS_FLcDNA=002-150-D04;Expression=AK108732;TENOR=Os10t0498900-01;KEGG=Os10t0498900-01
Chr10	irgsp1_rep	five_prime_UTR	19036192	19036321	.	-	.	Parent=Os10t0498900-01
Chr10	irgsp1_rep	CDS	19036081	19036191	.	-	0	Parent=Os10t0498900-01
Chr10	irgsp1_rep	CDS	19035790	19035945	.	-	0	Parent=Os10t0498900-01
Chr10	irgsp1_rep	CDS	19035345	19035451	.	-	0	Parent=Os10t0498900-01
Chr10	irgsp1_rep	CDS	19034975	19035200	.	-	1	Parent=Os10t0498900-01
Chr10	irgsp1_rep	CDS	19034767	19034880	.	-	0	Parent=Os10t0498900-01
Chr10	irgsp1_rep	CDS	19034139	19034423	.	-	0	Parent=Os10t0498900-01
Chr10	irgsp1_rep	three_prime_UTR	19033909	19034138	.	-	.	Parent=Os10t0498900-01
Chr10	irgsp1_rep	mRNA	19034134	19034883	.	+	.	ID=Os10t0499050-00;Name=Os10t0499050-00;Locus_id=Os10g0499050;Note=Hypothetical gene.;Transcript_evidence=BT016964 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0499050-00;KEGG=Os10t0499050-00
Chr10	irgsp1_rep	five_prime_UTR	19034134	19034184	.	+	.	Parent=Os10t0499050-00
Chr10	irgsp1_rep	CDS	19034185	19034348	.	+	0	Parent=Os10t0499050-00
Chr10	irgsp1_rep	CDS	19034741	19034879	.	+	1	Parent=Os10t0499050-00
Chr10	irgsp1_rep	three_prime_UTR	19034880	19034883	.	+	.	Parent=Os10t0499050-00
Chr10	irgsp1_rep	mRNA	19045236	19046259	.	+	.	ID=Os10t0499200-01;Name=Os10t0499200-01;Locus_id=Os10g0499200;Note=Conserved hypothetical protein.;Transcript_evidence=AK106856 (DDBJ%2C Best hit);ORF_evidence=Q8LNH4 (UniProt);NIAS_FLcDNA=002-118-B09;Expression=AK106856;TENOR=Os10t0499200-01;KEGG=Os10t0499200-01
Chr10	irgsp1_rep	five_prime_UTR	19045236	19045375	.	+	.	Parent=Os10t0499200-01
Chr10	irgsp1_rep	CDS	19045376	19045687	.	+	0	Parent=Os10t0499200-01
Chr10	irgsp1_rep	three_prime_UTR	19045688	19046259	.	+	.	Parent=Os10t0499200-01
Chr10	irgsp1_rep	mRNA	19054980	19056045	.	+	.	ID=Os10t0499400-01;Name=Os10t0499400-01;Locus_id=Os10g0499400;Note=Cystathionine beta-synthase%2C core domain containing protein.;Transcript_evidence=AK061011 (DDBJ%2C Best hit);ORF_evidence=Q8LNH1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Cystathionine beta-synthase%2C core (IPR000644);NIAS_FLcDNA=006-204-B02;Expression=AK061011;TENOR=Os10t0499400-01;KEGG=Os10t0499400-01
Chr10	irgsp1_rep	CDS	19054980	19055828	.	+	0	Parent=Os10t0499400-01
Chr10	irgsp1_rep	three_prime_UTR	19055829	19056045	.	+	.	Parent=Os10t0499400-01
Chr10	irgsp1_rep	mRNA	19056887	19059383	.	+	.	ID=Os10t0499500-01;Name=Os10t0499500-01;Locus_id=Os10g0499500;CGSNL Gene Symbol=RF1B;CGSNL Gene Name=RESTORATION OF FERTILITY 1B;Oryzabase Gene Symbol Synonym(s)=RF1b%2C Rf-1B%2C PPR7;Oryzabase Gene Name Synonym(s)=pentatricopeptide repeat motif containing gene 7%2C PPR motif-containing gene 7;Note=Similar to Fertility restorer.;Transcript_evidence=AK069398 (DDBJ%2C Best hit),AK065378 (DDBJ%2C Best hit);ORF_evidence=Q2PPE6 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J023011K09,J013020B09;Oryzabase=7464;TENOR=Os10t0499500-01
Chr10	irgsp1_rep	five_prime_UTR	19056887	19057027	.	+	.	Parent=Os10t0499500-01
Chr10	irgsp1_rep	five_prime_UTR	19057105	19057140	.	+	.	Parent=Os10t0499500-01
Chr10	irgsp1_rep	CDS	19057141	19058661	.	+	0	Parent=Os10t0499500-01
Chr10	irgsp1_rep	three_prime_UTR	19058662	19059383	.	+	.	Parent=Os10t0499500-01
Chr10	irgsp1_rep	mRNA	19062859	19063875	.	+	.	ID=Os10t0499600-01;Name=Os10t0499600-01;Locus_id=Os10g0499600;Note=Similar to predicted protein.;Transcript_evidence=AK107549 (DDBJ%2C Best hit);ORF_evidence=Q8LNG9 (UniProt);NIAS_FLcDNA=002-130-A07;Expression=AK107549;TENOR=Os10t0499600-01;KEGG=Os10t0499600-01
Chr10	irgsp1_rep	five_prime_UTR	19062859	19063134	.	+	.	Parent=Os10t0499600-01
Chr10	irgsp1_rep	CDS	19063135	19063209	.	+	0	Parent=Os10t0499600-01
Chr10	irgsp1_rep	CDS	19063296	19063448	.	+	0	Parent=Os10t0499600-01
Chr10	irgsp1_rep	CDS	19063539	19063589	.	+	0	Parent=Os10t0499600-01
Chr10	irgsp1_rep	three_prime_UTR	19063590	19063875	.	+	.	Parent=Os10t0499600-01
Chr10	irgsp1_rep	mRNA	19062860	19066123	.	+	.	ID=Os10t0499600-02;Name=Os10t0499600-02;Locus_id=Os10g0499600;Note=Conserved hypothetical protein.;Transcript_evidence=AK100791 (DDBJ%2C Best hit);ORF_evidence=B8BHQ3 (UniProt);NIAS_FLcDNA=J023121A22;TENOR=Os10t0499600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	19062860	19063134	.	+	.	Parent=Os10t0499600-02
Chr10	irgsp1_rep	CDS	19063135	19063209	.	+	0	Parent=Os10t0499600-02
Chr10	irgsp1_rep	CDS	19063296	19063448	.	+	0	Parent=Os10t0499600-02
Chr10	irgsp1_rep	CDS	19063539	19063585	.	+	0	Parent=Os10t0499600-02
Chr10	irgsp1_rep	CDS	19064197	19064251	.	+	1	Parent=Os10t0499600-02
Chr10	irgsp1_rep	CDS	19064326	19064352	.	+	0	Parent=Os10t0499600-02
Chr10	irgsp1_rep	three_prime_UTR	19064353	19064384	.	+	.	Parent=Os10t0499600-02
Chr10	irgsp1_rep	three_prime_UTR	19064498	19064669	.	+	.	Parent=Os10t0499600-02
Chr10	irgsp1_rep	three_prime_UTR	19065125	19065182	.	+	.	Parent=Os10t0499600-02
Chr10	irgsp1_rep	three_prime_UTR	19065359	19065415	.	+	.	Parent=Os10t0499600-02
Chr10	irgsp1_rep	three_prime_UTR	19065618	19066123	.	+	.	Parent=Os10t0499600-02
Chr10	irgsp1_rep	mRNA	19066310	19070919	.	-	.	ID=Os10t0499700-01;Name=Os10t0499700-01;Locus_id=Os10g0499700;Note=Hypothetical gene.;Transcript_evidence=AK111394 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-182-D01;Expression=AK111394;TENOR=Os10t0499700-01;KEGG=Os10t0499700-01
Chr10	irgsp1_rep	five_prime_UTR	19070919	19070919	.	-	.	Parent=Os10t0499700-01
Chr10	irgsp1_rep	CDS	19070580	19070918	.	-	0	Parent=Os10t0499700-01
Chr10	irgsp1_rep	CDS	19070434	19070436	.	-	0	Parent=Os10t0499700-01
Chr10	irgsp1_rep	three_prime_UTR	19070306	19070433	.	-	.	Parent=Os10t0499700-01
Chr10	irgsp1_rep	three_prime_UTR	19066310	19066563	.	-	.	Parent=Os10t0499700-01
Chr10	irgsp1_rep	mRNA	19066764	19068011	.	+	.	ID=Os10t0499800-01;Name=Os10t0499800-01;Locus_id=Os10g0499800;Note=Conserved hypothetical protein.;Transcript_evidence=AK099535 (DDBJ%2C Best hit);ORF_evidence=Q8LNU1 (UniProt);NIAS_FLcDNA=J013031N15;TENOR=Os10t0499800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	19066764	19066996	.	+	.	Parent=Os10t0499800-01
Chr10	irgsp1_rep	CDS	19066997	19067389	.	+	0	Parent=Os10t0499800-01
Chr10	irgsp1_rep	three_prime_UTR	19067390	19067610	.	+	.	Parent=Os10t0499800-01
Chr10	irgsp1_rep	three_prime_UTR	19067784	19068011	.	+	.	Parent=Os10t0499800-01
Chr10	irgsp1_rep	mRNA	19077936	19081520	.	+	.	ID=Os10t0500300-00;Name=Os10t0500300-00;Locus_id=Os10g0500300;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=FP100071 (DDBJ);ORF_evidence=NP_001147625.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);TENOR=Os10t0500300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	19077936	19078062	.	+	.	Parent=Os10t0500300-00
Chr10	irgsp1_rep	five_prime_UTR	19078624	19078884	.	+	.	Parent=Os10t0500300-00
Chr10	irgsp1_rep	CDS	19078885	19078949	.	+	0	Parent=Os10t0500300-00
Chr10	irgsp1_rep	CDS	19079439	19079589	.	+	1	Parent=Os10t0500300-00
Chr10	irgsp1_rep	CDS	19079677	19079743	.	+	0	Parent=Os10t0500300-00
Chr10	irgsp1_rep	CDS	19079851	19080085	.	+	2	Parent=Os10t0500300-00
Chr10	irgsp1_rep	CDS	19081036	19081246	.	+	1	Parent=Os10t0500300-00
Chr10	irgsp1_rep	three_prime_UTR	19081247	19081520	.	+	.	Parent=Os10t0500300-00
Chr10	irgsp1_rep	mRNA	19080875	19082278	.	-	.	ID=Os10t0500350-01;Name=Os10t0500350-01;Locus_id=Os10g0500350;Note=Non-protein coding transcript.;Transcript_evidence=AK110769 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-171-A09;TENOR=Os10t0500350-01
Chr10	irgsp1_rep	exon	19080875	19082278	.	-	.	Parent=Os10t0500350-01
Chr10	irgsp1_rep	mRNA	19082494	19083239	.	-	.	ID=Os10t0500400-01;Name=Os10t0500400-01;Locus_id=Os10g0500400;Note=Acyl-CoA N-acyltransferase domain containing protein.;Transcript_evidence=AK109295 (DDBJ%2C Best hit);ORF_evidence=NP_001150874.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: N-acetyltransferase activity (GO:0008080);InterPro=GCN5-related N-acetyltransferase (GNAT) domain (IPR000182),Acyl-CoA N-acyltransferase (IPR016181);NIAS_FLcDNA=002-188-D04;TENOR=Os10t0500400-01;KEGG=Os10t0500400-01
Chr10	irgsp1_rep	five_prime_UTR	19083194	19083239	.	-	.	Parent=Os10t0500400-01
Chr10	irgsp1_rep	CDS	19082881	19083193	.	-	0	Parent=Os10t0500400-01
Chr10	irgsp1_rep	CDS	19082571	19082791	.	-	2	Parent=Os10t0500400-01
Chr10	irgsp1_rep	three_prime_UTR	19082494	19082570	.	-	.	Parent=Os10t0500400-01
Chr10	irgsp1_rep	mRNA	19084294	19087629	.	+	.	ID=Os10t0500500-01;Name=Os10t0500500-01;Locus_id=Os10g0500500;Note=Similar to 30S Ribosomal protein S18.;Transcript_evidence=AK101839 (DDBJ%2C Best hit);ORF_evidence=B6T4J9 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S18 (IPR001648);NIAS_FLcDNA=J033069D17;Expression=AK101839;TENOR=Os10t0500500-01;KEGG=Os10t0500500-01
Chr10	irgsp1_rep	five_prime_UTR	19084294	19084414	.	+	.	Parent=Os10t0500500-01
Chr10	irgsp1_rep	CDS	19084415	19084541	.	+	0	Parent=Os10t0500500-01
Chr10	irgsp1_rep	CDS	19085097	19085392	.	+	2	Parent=Os10t0500500-01
Chr10	irgsp1_rep	CDS	19085761	19085856	.	+	0	Parent=Os10t0500500-01
Chr10	irgsp1_rep	CDS	19086488	19086547	.	+	0	Parent=Os10t0500500-01
Chr10	irgsp1_rep	CDS	19087092	19087337	.	+	0	Parent=Os10t0500500-01
Chr10	irgsp1_rep	three_prime_UTR	19087338	19087629	.	+	.	Parent=Os10t0500500-01
Chr10	irgsp1_rep	mRNA	19092675	19095643	.	+	.	ID=Os10t0500600-01;Name=Os10t0500600-01;Locus_id=Os10g0500600;Note=Zinc finger%2C C2H2-like domain containing protein.;Transcript_evidence=AK103175 (DDBJ%2C Best hit);ORF_evidence=Q337G3 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J033121H10;Expression=AK103175;TENOR=Os10t0500600-01;KEGG=Os10t0500600-01
Chr10	irgsp1_rep	five_prime_UTR	19092675	19092983	.	+	.	Parent=Os10t0500600-01
Chr10	irgsp1_rep	five_prime_UTR	19093164	19093293	.	+	.	Parent=Os10t0500600-01
Chr10	irgsp1_rep	CDS	19093294	19094439	.	+	0	Parent=Os10t0500600-01
Chr10	irgsp1_rep	CDS	19094769	19095065	.	+	0	Parent=Os10t0500600-01
Chr10	irgsp1_rep	three_prime_UTR	19095066	19095224	.	+	.	Parent=Os10t0500600-01
Chr10	irgsp1_rep	three_prime_UTR	19095311	19095643	.	+	.	Parent=Os10t0500600-01
Chr10	irgsp1_rep	mRNA	19094868	19095658	.	+	.	ID=Os10t0500600-02;Name=Os10t0500600-02;Locus_id=Os10g0500600;Note=Similar to predicted protein.;Transcript_evidence=AK059343 (DDBJ%2C Best hit);ORF_evidence=Q337G3 (UniProt);NIAS_FLcDNA=001-026-B07;Expression=AK059343;TENOR=Os10t0500600-02;KEGG=Os10t0500600-02
Chr10	irgsp1_rep	CDS	19094868	19094990	.	+	0	Parent=Os10t0500600-02
Chr10	irgsp1_rep	CDS	19095105	19095224	.	+	0	Parent=Os10t0500600-02
Chr10	irgsp1_rep	CDS	19095305	19095355	.	+	0	Parent=Os10t0500600-02
Chr10	irgsp1_rep	three_prime_UTR	19095356	19095658	.	+	.	Parent=Os10t0500600-02
Chr10	irgsp1_rep	mRNA	19096260	19096549	.	-	.	ID=Os10t0500650-01;Name=Os10t0500650-01;Locus_id=Os10g0500650;Note=Non-protein coding transcript.;Transcript_evidence=AK242548 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080318L01;TENOR=Os10t0500650-01
Chr10	irgsp1_rep	exon	19096260	19096549	.	-	.	Parent=Os10t0500650-01
Chr10	irgsp1_rep	mRNA	19096820	19100471	.	+	.	ID=Os10t0500700-01;Name=Os10t0500700-01;Locus_id=Os10g0500700;RAP-DB Gene Symbol Synonym(s)=OsGRXS17;RAP-DB Gene Name Synonym(s)=Glutaredoxin 17;CGSNL Gene Symbol=GRX22;CGSNL Gene Name=GLUTAREDOXIN 22;Oryzabase Gene Symbol Synonym(s)=OsGRX22%2C OsGRXS17%2C GRXS17;Oryzabase Gene Name Synonym(s)=glutaredoxin 22%2C Glutaredoxin S17;Note=Glutaredoxin%2C Drought stress response;Transcript_evidence=AK059628,AK067982;ORF_evidence=Q0IWL9;GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Thioredoxin-like superfamily (IPR036249),Monothiol glutaredoxin-related (IPR004480),Thioredoxin domain (IPR013766),Glutaredoxin (IPR002109),Glutaredoxin%2C PICOT-like (IPR033658);NIAS_FLcDNA=001-030-H12,J013121J12;Manual Curation=December 12%2C 2017;Literature_PMID=29162892;Oryzabase=13583;Expression=AK059628;TENOR=Os10t0500700-01;KEGG=Os10t0500700-01;Subcellular location=cytoplasm (GO:0005737), nucleus (GO:0005634)
Chr10	irgsp1_rep	five_prime_UTR	19096820	19096959	.	+	.	Parent=Os10t0500700-01
Chr10	irgsp1_rep	CDS	19096960	19097127	.	+	0	Parent=Os10t0500700-01
Chr10	irgsp1_rep	CDS	19098304	19098378	.	+	0	Parent=Os10t0500700-01
Chr10	irgsp1_rep	CDS	19099040	19100272	.	+	0	Parent=Os10t0500700-01
Chr10	irgsp1_rep	three_prime_UTR	19100273	19100471	.	+	.	Parent=Os10t0500700-01
Chr10	irgsp1_rep	mRNA	19096864	19100462	.	+	.	ID=Os10t0500700-02;Name=Os10t0500700-02;Locus_id=Os10g0500700;CGSNL Gene Symbol=GRX22;CGSNL Gene Name=GLUTAREDOXIN 22;Oryzabase Gene Symbol Synonym(s)=OsGRX22%2C OsGRXS17%2C GRXS17;Oryzabase Gene Name Synonym(s)=glutaredoxin 22%2C Glutaredoxin S17;Note=Thioredoxin fold domain containing protein.;Transcript_evidence=AK105626 (DDBJ%2C Best hit);ORF_evidence=Q0IWL9 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin (IPR002109),Monothiol glutaredoxin-related (IPR004480),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766);NIAS_FLcDNA=001-200-C12;Oryzabase=13583;Expression=AK105626;TENOR=Os10t0500700-02;KEGG=Os10t0500700-02
Chr10	irgsp1_rep	five_prime_UTR	19096864	19096959	.	+	.	Parent=Os10t0500700-02
Chr10	irgsp1_rep	CDS	19096960	19097127	.	+	0	Parent=Os10t0500700-02
Chr10	irgsp1_rep	CDS	19098304	19098378	.	+	0	Parent=Os10t0500700-02
Chr10	irgsp1_rep	CDS	19099040	19099876	.	+	0	Parent=Os10t0500700-02
Chr10	irgsp1_rep	CDS	19100198	19100272	.	+	0	Parent=Os10t0500700-02
Chr10	irgsp1_rep	three_prime_UTR	19100273	19100462	.	+	.	Parent=Os10t0500700-02
Chr10	irgsp1_rep	mRNA	19104084	19105701	.	+	.	ID=Os10t0501000-01;Name=Os10t0501000-01;Locus_id=Os10g0501000;Oryzabase Gene Symbol Synonym(s)=PPR8;Oryzabase Gene Name Synonym(s)=pentatricopeptide repeat motif containing gene 8%2C PPR motif-containing gene 8;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK071551 (DDBJ%2C Best hit);ORF_evidence=A2Z919 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J023106C12;Oryzabase=19662;Expression=AK071551;TENOR=Os10t0501000-01;KEGG=Os10t0501000-01
Chr10	irgsp1_rep	five_prime_UTR	19104084	19104085	.	+	.	Parent=Os10t0501000-01
Chr10	irgsp1_rep	CDS	19104086	19104409	.	+	0	Parent=Os10t0501000-01
Chr10	irgsp1_rep	CDS	19104518	19105549	.	+	0	Parent=Os10t0501000-01
Chr10	irgsp1_rep	three_prime_UTR	19105550	19105701	.	+	.	Parent=Os10t0501000-01
Chr10	irgsp1_rep	mRNA	19108036	19108399	.	-	.	ID=Os10t0501100-00;Name=Os10t0501100-00;Locus_id=Os10g0501100;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0036j17 (Wheat FLcDNA);ORF_evidence=NP_001067337.1 (RefSeq);TENOR=Os10t0501100-00
Chr10	irgsp1_rep	five_prime_UTR	19108392	19108399	.	-	.	Parent=Os10t0501100-00
Chr10	irgsp1_rep	CDS	19108200	19108391	.	-	0	Parent=Os10t0501100-00
Chr10	irgsp1_rep	three_prime_UTR	19108036	19108199	.	-	.	Parent=Os10t0501100-00
Chr10	irgsp1_rep	mRNA	19108715	19110695	.	+	.	ID=Os10t0501200-00;Name=Os10t0501200-00;Locus_id=Os10g0501200;Oryzabase Gene Symbol Synonym(s)=PPR9;Oryzabase Gene Name Synonym(s)=pentatricopeptide repeat motif containing gene 9%2C PPR motif-containing gene 9;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK334428 (DDBJ);ORF_evidence=B6SUS3 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);Oryzabase=19663;TENOR=Os10t0501200-00;KEGG=Os10t0501200-00
Chr10	irgsp1_rep	CDS	19108715	19109362	.	+	0	Parent=Os10t0501200-00
Chr10	irgsp1_rep	CDS	19109455	19110687	.	+	0	Parent=Os10t0501200-00
Chr10	irgsp1_rep	three_prime_UTR	19110688	19110695	.	+	.	Parent=Os10t0501200-00
Chr10	irgsp1_rep	mRNA	19112236	19114168	.	+	.	ID=Os10t0501300-01;Name=Os10t0501300-01;Locus_id=Os10g0501300;Oryzabase Gene Symbol Synonym(s)=PPR10;Oryzabase Gene Name Synonym(s)=pentatricopeptide repeat motif containing gene 10%2C PPR motif-containing gene 10;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK120203 (DDBJ%2C Best hit);ORF_evidence=B6SUS3 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013037L24;Oryzabase=19664;Expression=AK120203;TENOR=Os10t0501300-01;KEGG=Os10t0501300-01
Chr10	irgsp1_rep	five_prime_UTR	19112236	19112300	.	+	.	Parent=Os10t0501300-01
Chr10	irgsp1_rep	CDS	19112301	19112609	.	+	0	Parent=Os10t0501300-01
Chr10	irgsp1_rep	CDS	19112698	19113930	.	+	0	Parent=Os10t0501300-01
Chr10	irgsp1_rep	three_prime_UTR	19113931	19114168	.	+	.	Parent=Os10t0501300-01
Chr10	irgsp1_rep	mRNA	19115913	19116642	.	-	.	ID=Os10t0501401-01;Name=Os10t0501401-01;Locus_id=Os10g0501401;Note=Hypothetical conserved gene.;Transcript_evidence=AK241763 (DDBJ%2C Best hit);ORF_evidence=B9G6H6 (UniProt);NIAS_FLcDNA=J065205E14;TENOR=Os10t0501401-01;KEGG=Os10t0501401-01
Chr10	irgsp1_rep	five_prime_UTR	19116642	19116642	.	-	.	Parent=Os10t0501401-01
Chr10	irgsp1_rep	CDS	19116486	19116641	.	-	0	Parent=Os10t0501401-01
Chr10	irgsp1_rep	CDS	19116130	19116162	.	-	0	Parent=Os10t0501401-01
Chr10	irgsp1_rep	three_prime_UTR	19115913	19116129	.	-	.	Parent=Os10t0501401-01
Chr10	irgsp1_rep	mRNA	19115784	19116373	.	-	.	ID=Os10t0501401-02;Name=Os10t0501401-02;Locus_id=Os10g0501401;Note=Non-protein coding transcript.;Transcript_evidence=AK242202 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J075167E08;TENOR=Os10t0501401-02
Chr10	irgsp1_rep	exon	19116336	19116373	.	-	.	Parent=Os10t0501401-02
Chr10	irgsp1_rep	exon	19115784	19116227	.	-	.	Parent=Os10t0501401-02
Chr10	irgsp1_rep	mRNA	19129876	19133349	.	+	.	ID=Os10t0501500-01;Name=Os10t0501500-01;Locus_id=Os10g0501500;Note=Protein of unknown function DUF607 family protein.;Transcript_evidence=AK058495 (DDBJ%2C Best hit);ORF_evidence=A2Z921 (UniProt);InterPro=Coiled-coil domain containing protein 109%2C C-terminal (IPR006769);NIAS_FLcDNA=001-016-E10;Expression=AK058495;TENOR=Os10t0501500-01;KEGG=Os10t0501500-01
Chr10	irgsp1_rep	five_prime_UTR	19129876	19130003	.	+	.	Parent=Os10t0501500-01
Chr10	irgsp1_rep	CDS	19130004	19130498	.	+	0	Parent=Os10t0501500-01
Chr10	irgsp1_rep	CDS	19132639	19133154	.	+	0	Parent=Os10t0501500-01
Chr10	irgsp1_rep	three_prime_UTR	19133155	19133349	.	+	.	Parent=Os10t0501500-01
Chr10	irgsp1_rep	mRNA	19142222	19143586	.	-	.	ID=Os10t0501700-00;Name=Os10t0501700-00;Locus_id=Os10g0501700;Oryzabase Gene Symbol Synonym(s)=PPR11;Oryzabase Gene Name Synonym(s)=pentatricopeptide repeat motif containing gene 11%2C PPR motif-containing gene 11;Note=Similar to Protein Rf1%2C mitochondrial.;Transcript_evidence=ab initio prediction;ORF_evidence=Q76C99 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);Oryzabase=19665;TENOR=Os10t0501700-00
Chr10	irgsp1_rep	CDS	19142222	19143586	.	-	0	Parent=Os10t0501700-00
Chr10	irgsp1_rep	mRNA	19146523	19148132	.	+	.	ID=Os10t0501900-01;Name=Os10t0501900-01;Locus_id=Os10g0501900;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK120900 (DDBJ%2C Best hit);ORF_evidence=Q8LNF3 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026);NIAS_FLcDNA=J023030M03;Expression=AK120900;TENOR=Os10t0501900-01;KEGG=Os10t0501900-01
Chr10	irgsp1_rep	five_prime_UTR	19146523	19146606	.	+	.	Parent=Os10t0501900-01
Chr10	irgsp1_rep	CDS	19146607	19147457	.	+	0	Parent=Os10t0501900-01
Chr10	irgsp1_rep	CDS	19147553	19147793	.	+	1	Parent=Os10t0501900-01
Chr10	irgsp1_rep	three_prime_UTR	19147794	19148132	.	+	.	Parent=Os10t0501900-01
Chr10	irgsp1_rep	mRNA	19148232	19150913	.	-	.	ID=Os10t0502000-01;Name=Os10t0502000-01;Locus_id=Os10g0502000;Note=Similar to Thylakoid lumenal 17.4 kDa protein (P17.4) (Fragment).;Transcript_evidence=AK099827 (DDBJ%2C Best hit);ORF_evidence=NP_200161.2 (RefSeq);InterPro=Pentapeptide repeat (IPR001646);NIAS_FLcDNA=J013103I15;Expression=AK099827;TENOR=Os10t0502000-01;KEGG=Os10t0502000-01
Chr10	irgsp1_rep	five_prime_UTR	19150797	19150913	.	-	.	Parent=Os10t0502000-01
Chr10	irgsp1_rep	CDS	19150557	19150796	.	-	0	Parent=Os10t0502000-01
Chr10	irgsp1_rep	CDS	19148790	19149036	.	-	0	Parent=Os10t0502000-01
Chr10	irgsp1_rep	CDS	19148452	19148675	.	-	2	Parent=Os10t0502000-01
Chr10	irgsp1_rep	three_prime_UTR	19148232	19148451	.	-	.	Parent=Os10t0502000-01
Chr10	irgsp1_rep	mRNA	19152303	19152916	.	+	.	ID=Os10t0502100-01;Name=Os10t0502100-01;Locus_id=Os10g0502100;Note=Conserved hypothetical protein.;Transcript_evidence=AK063028 (DDBJ%2C Best hit);ORF_evidence=A2Z926 (UniProt);NIAS_FLcDNA=001-110-C01;Expression=AK063028;TENOR=Os10t0502100-01;KEGG=Os10t0502100-01
Chr10	irgsp1_rep	five_prime_UTR	19152303	19152428	.	+	.	Parent=Os10t0502100-01
Chr10	irgsp1_rep	CDS	19152429	19152698	.	+	0	Parent=Os10t0502100-01
Chr10	irgsp1_rep	three_prime_UTR	19152699	19152916	.	+	.	Parent=Os10t0502100-01
Chr10	irgsp1_rep	mRNA	19156045	19156747	.	-	.	ID=Os10t0502300-00;Name=Os10t0502300-00;Locus_id=Os10g0502300;Note=Hypothetical conserved gene.;Transcript_evidence=CT835750 (DDBJ%2C Best hit);ORF_evidence=Q9FW01 (UniProt);TENOR=Os10t0502300-00;KEGG=Os10t0502300-00
Chr10	irgsp1_rep	five_prime_UTR	19156657	19156747	.	-	.	Parent=Os10t0502300-00
Chr10	irgsp1_rep	CDS	19156381	19156656	.	-	0	Parent=Os10t0502300-00
Chr10	irgsp1_rep	three_prime_UTR	19156045	19156380	.	-	.	Parent=Os10t0502300-00
Chr10	irgsp1_rep	mRNA	19159179	19162398	.	-	.	ID=Os10t0502400-01;Name=Os10t0502400-01;Locus_id=Os10g0502400;Oryzabase Gene Symbol Synonym(s)=HEMA1%2C HEMA%2C OsHEMA%2C GluTR%2C OsHEMA1;Oryzabase Gene Name Synonym(s)=glutamyl-tRNA reductase%2C Glutamyl-tRNA reductase 2;Note=Similar to Glutamyl-tRNA reductase 2 (EC 1.2.1.70) (GluTR) (Fragment).;Transcript_evidence=AK099393 (DDBJ%2C Best hit);ORF_evidence=A2Z928 (UniProt);GO=Biological Process: tetrapyrrole biosynthetic process (GO:0033014),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: glutamyl-tRNA reductase activity (GO:0008883),Molecular Function: NADP binding (GO:0050661);InterPro=Tetrapyrrole biosynthesis%2C glutamyl-tRNA reductase (IPR000343),Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase (IPR006151),Tetrapyrrole biosynthesis%2C glutamyl-tRNA reductase%2C N-terminal (IPR015895),Tetrapyrrole biosynthesis%2C glutamyl-tRNA reductase%2C dimerisation domain (IPR015896),NAD(P)-binding domain (IPR016040),Tetrapyrrole biosynthesis%2C glutamyl-tRNA reductase%2C conserved site (IPR018214);NIAS_FLcDNA=J013000F15;Oryzabase=15759;Expression=AK099393;TENOR=Os10t0502400-01;KEGG=Os10t0502400-01 (EC:1.2.1.70)
Chr10	irgsp1_rep	five_prime_UTR	19162172	19162398	.	-	.	Parent=Os10t0502400-01
Chr10	irgsp1_rep	CDS	19161934	19162171	.	-	0	Parent=Os10t0502400-01
Chr10	irgsp1_rep	CDS	19160734	19160975	.	-	2	Parent=Os10t0502400-01
Chr10	irgsp1_rep	CDS	19159465	19160598	.	-	0	Parent=Os10t0502400-01
Chr10	irgsp1_rep	three_prime_UTR	19159179	19159464	.	-	.	Parent=Os10t0502400-01
Chr10	irgsp1_rep	mRNA	19159179	19160285	.	-	.	ID=Os10t0502400-02;Name=Os10t0502400-02;Locus_id=Os10g0502400;Oryzabase Gene Symbol Synonym(s)=HEMA1%2C HEMA%2C OsHEMA%2C GluTR%2C OsHEMA1;Oryzabase Gene Name Synonym(s)=glutamyl-tRNA reductase%2C Glutamyl-tRNA reductase 2;Note=Similar to Glutamyl-tRNA reductase.;Transcript_evidence=AK062231 (DDBJ%2C Best hit);ORF_evidence=A3C682 (UniProt);GO=Biological Process: tetrapyrrole biosynthetic process (GO:0033014),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: glutamyl-tRNA reductase activity (GO:0008883),Molecular Function: NADP binding (GO:0050661);InterPro=Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase (IPR006151),Tetrapyrrole biosynthesis%2C glutamyl-tRNA reductase%2C dimerisation domain (IPR015896),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-047-D06;Oryzabase=15759;Expression=AK062231;TENOR=Os10t0502400-02;KEGG=Os10t0502400-02 (EC:1.2.1.70)
Chr10	irgsp1_rep	five_prime_UTR	19160284	19160285	.	-	.	Parent=Os10t0502400-02
Chr10	irgsp1_rep	CDS	19159465	19160283	.	-	0	Parent=Os10t0502400-02
Chr10	irgsp1_rep	three_prime_UTR	19159179	19159464	.	-	.	Parent=Os10t0502400-02
Chr10	irgsp1_rep	mRNA	19159304	19162190	.	+	.	ID=Os10t0502450-00;Name=Os10t0502450-00;Locus_id=Os10g0502450;Note=Hypothetical protein.;Transcript_evidence=tplb0033j12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0502450-00
Chr10	irgsp1_rep	five_prime_UTR	19159304	19159828	.	+	.	Parent=Os10t0502450-00
Chr10	irgsp1_rep	CDS	19159829	19160467	.	+	0	Parent=Os10t0502450-00
Chr10	irgsp1_rep	three_prime_UTR	19160468	19160598	.	+	.	Parent=Os10t0502450-00
Chr10	irgsp1_rep	three_prime_UTR	19160734	19160970	.	+	.	Parent=Os10t0502450-00
Chr10	irgsp1_rep	three_prime_UTR	19161925	19162190	.	+	.	Parent=Os10t0502450-00
Chr10	irgsp1_rep	mRNA	19166324	19168787	.	-	.	ID=Os10t0502500-04;Name=Os10t0502500-04;Locus_id=Os10g0502500;CGSNL Gene Symbol=MSBP1;CGSNL Gene Name=MEMBRANE STEROID BINDING PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsMSBP1;Note=CytoChrome b5 domain containing protein.;Transcript_evidence=AK061824 (DDBJ%2C Best hit),AK060167 (DDBJ%2C Best hit),AK098881 (DDBJ%2C Best hit),AK121442 (DDBJ%2C Best hit);ORF_evidence=A6MZZ5 (UniProt);NIAS_FLcDNA=001-040-C02,006-311-D12,J013001F13,J023140O15;Oryzabase=7298;Expression=AK061824;TENOR=Os10t0502500-04;KEGG=Os10t0502500-04
Chr10	irgsp1_rep	five_prime_UTR	19168764	19168787	.	-	.	Parent=Os10t0502500-04
Chr10	irgsp1_rep	CDS	19168589	19168763	.	-	0	Parent=Os10t0502500-04
Chr10	irgsp1_rep	CDS	19168228	19168510	.	-	2	Parent=Os10t0502500-04
Chr10	irgsp1_rep	CDS	19166676	19167015	.	-	1	Parent=Os10t0502500-04
Chr10	irgsp1_rep	three_prime_UTR	19166324	19166675	.	-	.	Parent=Os10t0502500-04
Chr10	irgsp1_rep	mRNA	19169298	19169478	.	-	.	ID=Os10t0502533-00;Name=Os10t0502533-00;Locus_id=Os10g0502533;Note=Non-protein coding transcript.;Transcript_evidence=EU941955 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0502533-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	exon	19169298	19169478	.	-	.	Parent=Os10t0502533-00
Chr10	irgsp1_rep	mRNA	19171756	19173709	.	+	.	ID=Os10t0502566-00;Name=Os10t0502566-00;Locus_id=Os10g0502566;Note=Non-protein coding transcript.;Transcript_evidence=CT832674 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os10t0502566-00
Chr10	irgsp1_rep	exon	19171756	19172349	.	+	.	Parent=Os10t0502566-00
Chr10	irgsp1_rep	exon	19173617	19173709	.	+	.	Parent=Os10t0502566-00
Chr10	irgsp1_rep	mRNA	19171760	19174055	.	-	.	ID=Os10t0502600-01;Name=Os10t0502600-01;Locus_id=Os10g0502600;CGSNL Gene Symbol=MSBP2;CGSNL Gene Name=MEMBRANE STEROID BINDING PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsMSBP2%2C OsMSBP1;Oryzabase Gene Name Synonym(s)=membrane steroid-binding protein 1 homologue;Note=CytoChrome b5 domain containing protein.;Transcript_evidence=AK069511 (DDBJ%2C Best hit);ORF_evidence=NP_001150181.1 (RefSeq);GO=Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome b5 (IPR001199);NIAS_FLcDNA=J023019P08;Oryzabase=7299;TENOR=Os10t0502600-01
Chr10	irgsp1_rep	five_prime_UTR	19173934	19174055	.	-	.	Parent=Os10t0502600-01
Chr10	irgsp1_rep	CDS	19173617	19173933	.	-	0	Parent=Os10t0502600-01
Chr10	irgsp1_rep	CDS	19171968	19172349	.	-	1	Parent=Os10t0502600-01
Chr10	irgsp1_rep	three_prime_UTR	19171760	19171967	.	-	.	Parent=Os10t0502600-01
Chr10	irgsp1_rep	mRNA	19171980	19174055	.	-	.	ID=Os10t0502600-02;Name=Os10t0502600-02;Locus_id=Os10g0502600;CGSNL Gene Symbol=MSBP2;CGSNL Gene Name=MEMBRANE STEROID BINDING PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsMSBP2%2C OsMSBP1;Oryzabase Gene Name Synonym(s)=membrane steroid-binding protein 1 homologue;Note=Similar to Membrane steroid-binding protein 1 (Fragment).;Transcript_evidence=AK072008 (DDBJ%2C Best hit);ORF_evidence=A6MZZ5 (UniProt);GO=Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome b5 (IPR001199);NIAS_FLcDNA=J013099K01;Oryzabase=7299;Expression=AK072008;TENOR=Os10t0502600-02;KEGG=Os10t0502600-02
Chr10	irgsp1_rep	five_prime_UTR	19173934	19174055	.	-	.	Parent=Os10t0502600-02
Chr10	irgsp1_rep	CDS	19173571	19173933	.	-	0	Parent=Os10t0502600-02
Chr10	irgsp1_rep	three_prime_UTR	19171980	19173570	.	-	.	Parent=Os10t0502600-02
Chr10	irgsp1_rep	mRNA	19171760	19174011	.	-	.	ID=Os10t0502600-03;Name=Os10t0502600-03;Locus_id=Os10g0502600;CGSNL Gene Symbol=MSBP2;CGSNL Gene Name=MEMBRANE STEROID BINDING PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsMSBP2%2C OsMSBP1;Oryzabase Gene Name Synonym(s)=membrane steroid-binding protein 1 homologue;Note=CytoChrome b5 domain containing protein.;Transcript_evidence=AK105774 (DDBJ%2C Best hit);ORF_evidence=NP_001150181.1 (RefSeq);GO=Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome b5 (IPR001199);NIAS_FLcDNA=001-202-F02;Oryzabase=7299;TENOR=Os10t0502600-03
Chr10	irgsp1_rep	five_prime_UTR	19173934	19174011	.	-	.	Parent=Os10t0502600-03
Chr10	irgsp1_rep	CDS	19173617	19173933	.	-	0	Parent=Os10t0502600-03
Chr10	irgsp1_rep	CDS	19171968	19172349	.	-	1	Parent=Os10t0502600-03
Chr10	irgsp1_rep	three_prime_UTR	19171760	19171967	.	-	.	Parent=Os10t0502600-03
Chr10	irgsp1_rep	mRNA	19190130	19194448	.	-	.	ID=Os10t0502900-01;Name=Os10t0502900-01;Locus_id=Os10g0502900;Oryzabase Gene Symbol Synonym(s)=OsFbox557%2C Fbox557%2C Os_F0256;Oryzabase Gene Name Synonym(s)=F-box protein 557;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK071258 (DDBJ%2C Best hit);ORF_evidence=B8BHQ9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023083I09;Oryzabase=17326;Expression=AK071258;TENOR=Os10t0502900-01;KEGG=Os10t0502900-01
Chr10	irgsp1_rep	five_prime_UTR	19194177	19194448	.	-	.	Parent=Os10t0502900-01
Chr10	irgsp1_rep	five_prime_UTR	19191717	19191729	.	-	.	Parent=Os10t0502900-01
Chr10	irgsp1_rep	CDS	19191361	19191716	.	-	0	Parent=Os10t0502900-01
Chr10	irgsp1_rep	CDS	19190422	19191031	.	-	1	Parent=Os10t0502900-01
Chr10	irgsp1_rep	three_prime_UTR	19190130	19190421	.	-	.	Parent=Os10t0502900-01
Chr10	irgsp1_rep	mRNA	19198745	19200729	.	-	.	ID=Os10t0503100-01;Name=Os10t0503100-01;Locus_id=Os10g0503100;Oryzabase Gene Symbol Synonym(s)=OsPLIM2c;Note=Similar to Transcription factor L2.;Transcript_evidence=AK072520 (DDBJ%2C Best hit);ORF_evidence=A2Z934 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C LIM-type (IPR001781);NIAS_FLcDNA=J023131K23;Oryzabase=9932;Expression=AK072520;TENOR=Os10t0503100-01;KEGG=Os10t0503100-01
Chr10	irgsp1_rep	five_prime_UTR	19200532	19200729	.	-	.	Parent=Os10t0503100-01
Chr10	irgsp1_rep	CDS	19200397	19200531	.	-	0	Parent=Os10t0503100-01
Chr10	irgsp1_rep	CDS	19200179	19200278	.	-	0	Parent=Os10t0503100-01
Chr10	irgsp1_rep	CDS	19200061	19200083	.	-	2	Parent=Os10t0503100-01
Chr10	irgsp1_rep	CDS	19199753	19199842	.	-	0	Parent=Os10t0503100-01
Chr10	irgsp1_rep	CDS	19199139	19199465	.	-	0	Parent=Os10t0503100-01
Chr10	irgsp1_rep	three_prime_UTR	19198745	19199138	.	-	.	Parent=Os10t0503100-01
Chr10	irgsp1_rep	mRNA	19201583	19206783	.	-	.	ID=Os10t0503200-01;Name=Os10t0503200-01;Locus_id=Os10g0503200;Note=Similar to Dihydrofolate synthetase /folylpolyglutamate synthetase.;Transcript_evidence=AK072481 (DDBJ%2C Best hit);ORF_evidence=NP_001152065.1 (RefSeq);GO=Biological Process: biosynthetic process (GO:0009058),Biological Process: folic acid-containing compound biosynthetic process (GO:0009396),Molecular Function: tetrahydrofolylpolyglutamate synthase activity (GO:0004326),Molecular Function: ATP binding (GO:0005524),Molecular Function: ligase activity (GO:0016874);InterPro=Folylpolyglutamate synthetase (IPR001645),Mur ligase%2C C-terminal (IPR004101),Mur ligase%2C central (IPR013221),Folylpolyglutamate synthase%2C eukaryota (IPR023600);NIAS_FLcDNA=J023125G01;Expression=AK072481;TENOR=Os10t0503200-01;KEGG=Os10t0503200-01
Chr10	irgsp1_rep	five_prime_UTR	19206761	19206783	.	-	.	Parent=Os10t0503200-01
Chr10	irgsp1_rep	CDS	19206475	19206760	.	-	0	Parent=Os10t0503200-01
Chr10	irgsp1_rep	CDS	19206229	19206356	.	-	2	Parent=Os10t0503200-01
Chr10	irgsp1_rep	CDS	19206074	19206139	.	-	0	Parent=Os10t0503200-01
Chr10	irgsp1_rep	CDS	19205409	19205518	.	-	0	Parent=Os10t0503200-01
Chr10	irgsp1_rep	CDS	19205167	19205227	.	-	1	Parent=Os10t0503200-01
Chr10	irgsp1_rep	CDS	19204946	19205029	.	-	0	Parent=Os10t0503200-01
Chr10	irgsp1_rep	CDS	19204101	19204161	.	-	0	Parent=Os10t0503200-01
Chr10	irgsp1_rep	CDS	19203967	19204013	.	-	2	Parent=Os10t0503200-01
Chr10	irgsp1_rep	CDS	19203742	19203819	.	-	0	Parent=Os10t0503200-01
Chr10	irgsp1_rep	CDS	19203441	19203605	.	-	0	Parent=Os10t0503200-01
Chr10	irgsp1_rep	CDS	19203128	19203370	.	-	0	Parent=Os10t0503200-01
Chr10	irgsp1_rep	CDS	19202917	19202995	.	-	0	Parent=Os10t0503200-01
Chr10	irgsp1_rep	CDS	19202634	19202789	.	-	2	Parent=Os10t0503200-01
Chr10	irgsp1_rep	CDS	19202397	19202506	.	-	2	Parent=Os10t0503200-01
Chr10	irgsp1_rep	CDS	19201896	19201955	.	-	0	Parent=Os10t0503200-01
Chr10	irgsp1_rep	three_prime_UTR	19201583	19201895	.	-	.	Parent=Os10t0503200-01
Chr10	irgsp1_rep	mRNA	19201596	19206783	.	-	.	ID=Os10t0503200-02;Name=Os10t0503200-02;Locus_id=Os10g0503200;Note=Similar to Folylpolyglutamate synthase.;Transcript_evidence=AK121595 (DDBJ%2C Best hit);ORF_evidence=NP_001152065.1 (RefSeq);GO=Biological Process: biosynthetic process (GO:0009058),Biological Process: folic acid-containing compound biosynthetic process (GO:0009396),Molecular Function: tetrahydrofolylpolyglutamate synthase activity (GO:0004326),Molecular Function: ATP binding (GO:0005524);InterPro=Folylpolyglutamate synthetase (IPR001645),Mur ligase%2C central (IPR013221);NIAS_FLcDNA=J033039A16;Expression=AK121595;TENOR=Os10t0503200-02;KEGG=Os10t0503200-02 (EC:6.3.2.17)
Chr10	irgsp1_rep	five_prime_UTR	19206761	19206783	.	-	.	Parent=Os10t0503200-02
Chr10	irgsp1_rep	CDS	19206475	19206760	.	-	0	Parent=Os10t0503200-02
Chr10	irgsp1_rep	CDS	19206229	19206356	.	-	2	Parent=Os10t0503200-02
Chr10	irgsp1_rep	CDS	19206074	19206139	.	-	0	Parent=Os10t0503200-02
Chr10	irgsp1_rep	CDS	19205409	19205518	.	-	0	Parent=Os10t0503200-02
Chr10	irgsp1_rep	CDS	19205065	19205227	.	-	1	Parent=Os10t0503200-02
Chr10	irgsp1_rep	three_prime_UTR	19204946	19205064	.	-	.	Parent=Os10t0503200-02
Chr10	irgsp1_rep	three_prime_UTR	19204449	19204505	.	-	.	Parent=Os10t0503200-02
Chr10	irgsp1_rep	three_prime_UTR	19204101	19204161	.	-	.	Parent=Os10t0503200-02
Chr10	irgsp1_rep	three_prime_UTR	19203967	19204013	.	-	.	Parent=Os10t0503200-02
Chr10	irgsp1_rep	three_prime_UTR	19203441	19203819	.	-	.	Parent=Os10t0503200-02
Chr10	irgsp1_rep	three_prime_UTR	19203128	19203370	.	-	.	Parent=Os10t0503200-02
Chr10	irgsp1_rep	three_prime_UTR	19202917	19202995	.	-	.	Parent=Os10t0503200-02
Chr10	irgsp1_rep	three_prime_UTR	19202634	19202789	.	-	.	Parent=Os10t0503200-02
Chr10	irgsp1_rep	three_prime_UTR	19202397	19202506	.	-	.	Parent=Os10t0503200-02
Chr10	irgsp1_rep	three_prime_UTR	19201596	19201955	.	-	.	Parent=Os10t0503200-02
Chr10	irgsp1_rep	mRNA	19213699	19214691	.	-	.	ID=Os10t0503250-00;Name=Os10t0503250-00;Locus_id=Os10g0503250;Note=Hypothetical protein.;Transcript_evidence=BT035701 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0503250-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	19214690	19214691	.	-	.	Parent=Os10t0503250-00
Chr10	irgsp1_rep	CDS	19213699	19214689	.	-	0	Parent=Os10t0503250-00
Chr10	irgsp1_rep	mRNA	19214959	19215235	.	+	.	ID=Os10t0503300-00;Name=Os10t0503300-00;Locus_id=Os10g0503300;Note=Similar to 10-deacetylbaccatin III 10-O-acetyltransferase.;Transcript_evidence=CT835775 (DDBJ%2C Best hit);ORF_evidence=NP_001152518.1 (RefSeq);TENOR=Os10t0503300-00;KEGG=Os10t0503300-00
Chr10	irgsp1_rep	five_prime_UTR	19214959	19214959	.	+	.	Parent=Os10t0503300-00
Chr10	irgsp1_rep	CDS	19214960	19215112	.	+	0	Parent=Os10t0503300-00
Chr10	irgsp1_rep	three_prime_UTR	19215113	19215235	.	+	.	Parent=Os10t0503300-00
Chr10	irgsp1_rep	mRNA	19218597	19224021	.	+	.	ID=Os10t0503500-01;Name=Os10t0503500-01;Locus_id=Os10g0503500;Note=Similar to NAD-dependent malic enzyme 59 kDa isoform%2C mitochondrial precursor (EC 1.1.1.39) (NAD-ME).;Transcript_evidence=AK101024 (DDBJ%2C Best hit);ORF_evidence=B8BHR1 (UniProt);GO=Biological Process: malate metabolic process (GO:0006108),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: malic enzyme activity (GO:0004470),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: malate dehydrogenase (oxaloacetate-decarboxylating) activity (GO:0016619),Molecular Function: metal ion binding (GO:0046872),Molecular Function: NAD binding (GO:0051287);InterPro=Malic oxidoreductase (IPR001891),Malic enzyme%2C N-terminal (IPR012301),Malic enzyme%2C NAD-binding (IPR012302),Malic enzyme%2C conserved site (IPR015884),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023150D19;Expression=AK101024;TENOR=Os10t0503500-01;KEGG=Os10t0503500-01 (EC:1.1.1.39%2C EC:1.1.1.40)
Chr10	irgsp1_rep	five_prime_UTR	19218597	19218862	.	+	.	Parent=Os10t0503500-01
Chr10	irgsp1_rep	CDS	19218863	19219033	.	+	0	Parent=Os10t0503500-01
Chr10	irgsp1_rep	CDS	19219110	19219206	.	+	0	Parent=Os10t0503500-01
Chr10	irgsp1_rep	CDS	19219315	19219433	.	+	2	Parent=Os10t0503500-01
Chr10	irgsp1_rep	CDS	19219539	19219706	.	+	0	Parent=Os10t0503500-01
Chr10	irgsp1_rep	CDS	19220078	19220206	.	+	0	Parent=Os10t0503500-01
Chr10	irgsp1_rep	CDS	19220441	19220501	.	+	0	Parent=Os10t0503500-01
Chr10	irgsp1_rep	CDS	19220595	19220698	.	+	2	Parent=Os10t0503500-01
Chr10	irgsp1_rep	CDS	19220772	19220855	.	+	0	Parent=Os10t0503500-01
Chr10	irgsp1_rep	CDS	19220955	19221061	.	+	0	Parent=Os10t0503500-01
Chr10	irgsp1_rep	CDS	19221170	19221275	.	+	1	Parent=Os10t0503500-01
Chr10	irgsp1_rep	CDS	19221439	19221552	.	+	0	Parent=Os10t0503500-01
Chr10	irgsp1_rep	CDS	19221683	19221748	.	+	0	Parent=Os10t0503500-01
Chr10	irgsp1_rep	CDS	19222318	19222390	.	+	0	Parent=Os10t0503500-01
Chr10	irgsp1_rep	CDS	19222471	19222557	.	+	2	Parent=Os10t0503500-01
Chr10	irgsp1_rep	CDS	19222645	19222699	.	+	2	Parent=Os10t0503500-01
Chr10	irgsp1_rep	CDS	19222789	19222860	.	+	1	Parent=Os10t0503500-01
Chr10	irgsp1_rep	CDS	19223252	19223314	.	+	1	Parent=Os10t0503500-01
Chr10	irgsp1_rep	CDS	19223422	19223536	.	+	1	Parent=Os10t0503500-01
Chr10	irgsp1_rep	CDS	19223626	19223697	.	+	0	Parent=Os10t0503500-01
Chr10	irgsp1_rep	three_prime_UTR	19223698	19224021	.	+	.	Parent=Os10t0503500-01
Chr10	irgsp1_rep	mRNA	19218687	19224005	.	+	.	ID=Os10t0503500-02;Name=Os10t0503500-02;Locus_id=Os10g0503500;Note=Similar to Malic enzyme.;Transcript_evidence=AK070828 (DDBJ%2C Best hit);ORF_evidence=B8BHR1 (UniProt);GO=Biological Process: malate metabolic process (GO:0006108),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: malic enzyme activity (GO:0004470),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: malate dehydrogenase (oxaloacetate-decarboxylating) activity (GO:0016619),Molecular Function: metal ion binding (GO:0046872),Molecular Function: NAD binding (GO:0051287);InterPro=Malic oxidoreductase (IPR001891),Malic enzyme%2C N-terminal (IPR012301),Malic enzyme%2C NAD-binding (IPR012302),Malic enzyme%2C conserved site (IPR015884),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023065M02;Expression=AK070828;TENOR=Os10t0503500-02;KEGG=Os10t0503500-02 (EC:1.1.1.40)
Chr10	irgsp1_rep	five_prime_UTR	19218687	19218862	.	+	.	Parent=Os10t0503500-02
Chr10	irgsp1_rep	CDS	19218863	19219033	.	+	0	Parent=Os10t0503500-02
Chr10	irgsp1_rep	CDS	19219110	19219206	.	+	0	Parent=Os10t0503500-02
Chr10	irgsp1_rep	CDS	19219315	19219433	.	+	2	Parent=Os10t0503500-02
Chr10	irgsp1_rep	CDS	19219539	19219706	.	+	0	Parent=Os10t0503500-02
Chr10	irgsp1_rep	CDS	19220078	19220206	.	+	0	Parent=Os10t0503500-02
Chr10	irgsp1_rep	CDS	19220441	19220501	.	+	0	Parent=Os10t0503500-02
Chr10	irgsp1_rep	CDS	19220595	19220698	.	+	2	Parent=Os10t0503500-02
Chr10	irgsp1_rep	CDS	19220772	19220855	.	+	0	Parent=Os10t0503500-02
Chr10	irgsp1_rep	CDS	19220955	19221061	.	+	0	Parent=Os10t0503500-02
Chr10	irgsp1_rep	CDS	19221163	19221190	.	+	1	Parent=Os10t0503500-02
Chr10	irgsp1_rep	three_prime_UTR	19221191	19221275	.	+	.	Parent=Os10t0503500-02
Chr10	irgsp1_rep	three_prime_UTR	19221439	19221552	.	+	.	Parent=Os10t0503500-02
Chr10	irgsp1_rep	three_prime_UTR	19221683	19221748	.	+	.	Parent=Os10t0503500-02
Chr10	irgsp1_rep	three_prime_UTR	19222318	19222390	.	+	.	Parent=Os10t0503500-02
Chr10	irgsp1_rep	three_prime_UTR	19222471	19222557	.	+	.	Parent=Os10t0503500-02
Chr10	irgsp1_rep	three_prime_UTR	19222645	19222699	.	+	.	Parent=Os10t0503500-02
Chr10	irgsp1_rep	three_prime_UTR	19222789	19222860	.	+	.	Parent=Os10t0503500-02
Chr10	irgsp1_rep	three_prime_UTR	19223252	19223314	.	+	.	Parent=Os10t0503500-02
Chr10	irgsp1_rep	three_prime_UTR	19223422	19223536	.	+	.	Parent=Os10t0503500-02
Chr10	irgsp1_rep	three_prime_UTR	19223626	19224005	.	+	.	Parent=Os10t0503500-02
Chr10	irgsp1_rep	mRNA	19222362	19223971	.	+	.	ID=Os10t0503500-03;Name=Os10t0503500-03;Locus_id=Os10g0503500;Note=Similar to Malic enzyme.;Transcript_evidence=AK058254 (DDBJ%2C Best hit);ORF_evidence=B9G6I3 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: NAD binding (GO:0051287);InterPro=Malic enzyme%2C NAD-binding (IPR012302),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-012-C11;Expression=AK058254;TENOR=Os10t0503500-03;KEGG=Os10t0503500-03 (EC:1.1.1.40)
Chr10	irgsp1_rep	five_prime_UTR	19222362	19222362	.	+	.	Parent=Os10t0503500-03
Chr10	irgsp1_rep	CDS	19222363	19222390	.	+	0	Parent=Os10t0503500-03
Chr10	irgsp1_rep	CDS	19222471	19222557	.	+	2	Parent=Os10t0503500-03
Chr10	irgsp1_rep	CDS	19222645	19222699	.	+	2	Parent=Os10t0503500-03
Chr10	irgsp1_rep	CDS	19222789	19222860	.	+	1	Parent=Os10t0503500-03
Chr10	irgsp1_rep	CDS	19223252	19223314	.	+	1	Parent=Os10t0503500-03
Chr10	irgsp1_rep	CDS	19223422	19223536	.	+	1	Parent=Os10t0503500-03
Chr10	irgsp1_rep	CDS	19223626	19223697	.	+	0	Parent=Os10t0503500-03
Chr10	irgsp1_rep	three_prime_UTR	19223698	19223971	.	+	.	Parent=Os10t0503500-03
Chr10	irgsp1_rep	mRNA	19227838	19228173	.	+	.	ID=Os10t0503550-00;Name=Os10t0503550-00;Locus_id=Os10g0503550;Note=Non-protein coding transcript.;Transcript_evidence=CT835611 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os10t0503550-00
Chr10	irgsp1_rep	exon	19227838	19228173	.	+	.	Parent=Os10t0503550-00
Chr10	irgsp1_rep	mRNA	19230267	19233195	.	-	.	ID=Os10t0503600-01;Name=Os10t0503600-01;Locus_id=Os10g0503600;CGSNL Gene Symbol=TET14;CGSNL Gene Name=TETRASPANIN 14;Oryzabase Gene Symbol Synonym(s)=OsTET14;Oryzabase Gene Name Synonym(s)=tetraspanin 14;Note=Tetraspanin domain containing protein.;Transcript_evidence=AK103857 (DDBJ%2C Best hit);ORF_evidence=NP_974077.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Tetraspanin%2C subgroup (IPR000301),Tetraspanin (IPR018499);NIAS_FLcDNA=J033148O13;Oryzabase=20318;Expression=AK103857;TENOR=Os10t0503600-01;KEGG=Os10t0503600-01
Chr10	irgsp1_rep	five_prime_UTR	19233025	19233195	.	-	.	Parent=Os10t0503600-01
Chr10	irgsp1_rep	CDS	19232971	19233024	.	-	0	Parent=Os10t0503600-01
Chr10	irgsp1_rep	CDS	19232304	19232416	.	-	0	Parent=Os10t0503600-01
Chr10	irgsp1_rep	CDS	19232160	19232214	.	-	1	Parent=Os10t0503600-01
Chr10	irgsp1_rep	CDS	19232004	19232059	.	-	0	Parent=Os10t0503600-01
Chr10	irgsp1_rep	CDS	19231703	19231750	.	-	1	Parent=Os10t0503600-01
Chr10	irgsp1_rep	CDS	19231450	19231498	.	-	1	Parent=Os10t0503600-01
Chr10	irgsp1_rep	CDS	19231264	19231347	.	-	0	Parent=Os10t0503600-01
Chr10	irgsp1_rep	CDS	19231070	19231137	.	-	0	Parent=Os10t0503600-01
Chr10	irgsp1_rep	CDS	19230848	19230973	.	-	1	Parent=Os10t0503600-01
Chr10	irgsp1_rep	CDS	19230678	19230753	.	-	1	Parent=Os10t0503600-01
Chr10	irgsp1_rep	CDS	19230450	19230533	.	-	0	Parent=Os10t0503600-01
Chr10	irgsp1_rep	three_prime_UTR	19230267	19230449	.	-	.	Parent=Os10t0503600-01
Chr10	irgsp1_rep	mRNA	19236499	19241922	.	-	.	ID=Os10t0503700-01;Name=Os10t0503700-01;Locus_id=Os10g0503700;Oryzabase Gene Symbol Synonym(s)=OsRH12;Oryzabase Gene Name Synonym(s)=RNA helicase 12;Note=Similar to ATP-dependent RNA helicase dhh1.;Transcript_evidence=AK073085 (DDBJ%2C Best hit);ORF_evidence=NP_001150170.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=RNA helicase%2C ATP-dependent%2C DEAD-box%2C conserved site (IPR000629),Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=J033023C03;Oryzabase=19130;TENOR=Os10t0503700-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	19241770	19241922	.	-	.	Parent=Os10t0503700-01
Chr10	irgsp1_rep	CDS	19241414	19241769	.	-	0	Parent=Os10t0503700-01
Chr10	irgsp1_rep	CDS	19240854	19240914	.	-	1	Parent=Os10t0503700-01
Chr10	irgsp1_rep	CDS	19240462	19240696	.	-	0	Parent=Os10t0503700-01
Chr10	irgsp1_rep	CDS	19239537	19239775	.	-	2	Parent=Os10t0503700-01
Chr10	irgsp1_rep	CDS	19239185	19239436	.	-	0	Parent=Os10t0503700-01
Chr10	irgsp1_rep	CDS	19238918	19239098	.	-	0	Parent=Os10t0503700-01
Chr10	irgsp1_rep	CDS	19238172	19238260	.	-	2	Parent=Os10t0503700-01
Chr10	irgsp1_rep	CDS	19237203	19237276	.	-	0	Parent=Os10t0503700-01
Chr10	irgsp1_rep	CDS	19237047	19237125	.	-	1	Parent=Os10t0503700-01
Chr10	irgsp1_rep	three_prime_UTR	19236967	19237046	.	-	.	Parent=Os10t0503700-01
Chr10	irgsp1_rep	three_prime_UTR	19236499	19236879	.	-	.	Parent=Os10t0503700-01
Chr10	irgsp1_rep	mRNA	19236463	19239599	.	-	.	ID=Os10t0503700-02;Name=Os10t0503700-02;Locus_id=Os10g0503700;Oryzabase Gene Symbol Synonym(s)=OsRH12;Oryzabase Gene Name Synonym(s)=RNA helicase 12;Note=Similar to ATP-dependent RNA helicase dhh1.;Transcript_evidence=AK101354 (DDBJ%2C Best hit);ORF_evidence=NP_001150170.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=RNA helicase%2C ATP-dependent%2C DEAD-box%2C conserved site (IPR000629),Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J033034P16;Oryzabase=19130;TENOR=Os10t0503700-02;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	19239537	19239599	.	-	0	Parent=Os10t0503700-02
Chr10	irgsp1_rep	CDS	19239185	19239436	.	-	0	Parent=Os10t0503700-02
Chr10	irgsp1_rep	CDS	19238918	19239098	.	-	0	Parent=Os10t0503700-02
Chr10	irgsp1_rep	CDS	19238172	19238260	.	-	2	Parent=Os10t0503700-02
Chr10	irgsp1_rep	CDS	19237203	19237276	.	-	0	Parent=Os10t0503700-02
Chr10	irgsp1_rep	CDS	19237047	19237125	.	-	1	Parent=Os10t0503700-02
Chr10	irgsp1_rep	three_prime_UTR	19236967	19237046	.	-	.	Parent=Os10t0503700-02
Chr10	irgsp1_rep	three_prime_UTR	19236463	19236879	.	-	.	Parent=Os10t0503700-02
Chr10	irgsp1_rep	mRNA	19236368	19237226	.	-	.	ID=Os10t0503700-03;Name=Os10t0503700-03;Locus_id=Os10g0503700;Oryzabase Gene Symbol Synonym(s)=OsRH12;Oryzabase Gene Name Synonym(s)=RNA helicase 12;Note=Similar to ATP-dependent RNA helicase dhh1.;Transcript_evidence=AK059398 (DDBJ%2C Best hit);ORF_evidence=NP_001150170.1 (RefSeq);NIAS_FLcDNA=001-027-B01;Oryzabase=19130;Expression=AK059398;TENOR=Os10t0503700-03;KEGG=Os10t0503700-03
Chr10	irgsp1_rep	five_prime_UTR	19237226	19237226	.	-	.	Parent=Os10t0503700-03
Chr10	irgsp1_rep	CDS	19237203	19237225	.	-	0	Parent=Os10t0503700-03
Chr10	irgsp1_rep	CDS	19237047	19237125	.	-	1	Parent=Os10t0503700-03
Chr10	irgsp1_rep	three_prime_UTR	19236967	19237046	.	-	.	Parent=Os10t0503700-03
Chr10	irgsp1_rep	three_prime_UTR	19236368	19236879	.	-	.	Parent=Os10t0503700-03
Chr10	irgsp1_rep	mRNA	19244954	19246731	.	-	.	ID=Os10t0503800-01;Name=Os10t0503800-01;Locus_id=Os10g0503800;CGSNL Gene Symbol=REM1.2;CGSNL Gene Name=REMORIN 1.2;Oryzabase Gene Symbol Synonym(s)=OsREM1.2;Oryzabase Gene Name Synonym(s)=Remorin 1.2%2C remorin group 1 member 2;Note=Similar to Remorin.;Transcript_evidence=AK073955 (DDBJ%2C Best hit);ORF_evidence=P93788 (UniProt);InterPro=Remorin%2C C-terminal (IPR005516);NIAS_FLcDNA=J033075A20;Oryzabase=20270;TENOR=Os10t0503800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	19246641	19246731	.	-	.	Parent=Os10t0503800-01
Chr10	irgsp1_rep	CDS	19246529	19246640	.	-	0	Parent=Os10t0503800-01
Chr10	irgsp1_rep	CDS	19246068	19246109	.	-	2	Parent=Os10t0503800-01
Chr10	irgsp1_rep	CDS	19245865	19245952	.	-	2	Parent=Os10t0503800-01
Chr10	irgsp1_rep	CDS	19245482	19245641	.	-	1	Parent=Os10t0503800-01
Chr10	irgsp1_rep	three_prime_UTR	19244954	19245481	.	-	.	Parent=Os10t0503800-01
Chr10	irgsp1_rep	mRNA	19244957	19245175	.	-	.	ID=Os10t0503800-02;Name=Os10t0503800-02;Locus_id=Os10g0503800;CGSNL Gene Symbol=REM1.2;CGSNL Gene Name=REMORIN 1.2;Oryzabase Gene Symbol Synonym(s)=OsREM1.2;Oryzabase Gene Name Synonym(s)=Remorin 1.2%2C remorin group 1 member 2;Note=Non-protein coding transcript.;Transcript_evidence=AK058260 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-012-G03;Oryzabase=20270;TENOR=Os10t0503800-02
Chr10	irgsp1_rep	exon	19244957	19245175	.	-	.	Parent=Os10t0503800-02
Chr10	irgsp1_rep	mRNA	19255110	19255555	.	+	.	ID=Os10t0504100-00;Name=Os10t0504100-00;Locus_id=Os10g0504100;Note=Conserved hypothetical protein.;Transcript_evidence=EU953699 (DDBJ);ORF_evidence=Q9FVY2 (UniProt);TENOR=Os10t0504100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	19255110	19255111	.	+	.	Parent=Os10t0504100-00
Chr10	irgsp1_rep	CDS	19255112	19255381	.	+	0	Parent=Os10t0504100-00
Chr10	irgsp1_rep	three_prime_UTR	19255382	19255555	.	+	.	Parent=Os10t0504100-00
Chr10	irgsp1_rep	mRNA	19255699	19258146	.	-	.	ID=Os10t0504200-01;Name=Os10t0504200-01;Locus_id=Os10g0504200;Note=CytoChrome b561 family protein.;Transcript_evidence=AK111107 (DDBJ%2C Best hit);ORF_evidence=B6U566 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=CytoChrome b561%2C eukaryote (IPR004877),CytoChrome b561/ferric reductase transmembrane (IPR006593);NIAS_FLcDNA=002-176-A03;Expression=AK111107;TENOR=Os10t0504200-01;KEGG=Os10t0504200-01
Chr10	irgsp1_rep	five_prime_UTR	19258068	19258146	.	-	.	Parent=Os10t0504200-01
Chr10	irgsp1_rep	CDS	19257933	19258067	.	-	0	Parent=Os10t0504200-01
Chr10	irgsp1_rep	CDS	19257235	19257283	.	-	0	Parent=Os10t0504200-01
Chr10	irgsp1_rep	CDS	19256908	19257107	.	-	2	Parent=Os10t0504200-01
Chr10	irgsp1_rep	CDS	19255873	19256181	.	-	0	Parent=Os10t0504200-01
Chr10	irgsp1_rep	three_prime_UTR	19255699	19255872	.	-	.	Parent=Os10t0504200-01
Chr10	irgsp1_rep	mRNA	19260519	19274233	.	+	.	ID=Os10t0504500-01;Name=Os10t0504500-01;Locus_id=Os10g0504500;Note=Conserved hypothetical protein.;Transcript_evidence=AK070800 (DDBJ%2C Best hit);ORF_evidence=Q7G2C7 (UniProt);NIAS_FLcDNA=J023071E12;Expression=AK070800;TENOR=Os10t0504500-01;KEGG=Os10t0504500-01
Chr10	irgsp1_rep	five_prime_UTR	19260519	19261096	.	+	.	Parent=Os10t0504500-01
Chr10	irgsp1_rep	five_prime_UTR	19261578	19261689	.	+	.	Parent=Os10t0504500-01
Chr10	irgsp1_rep	five_prime_UTR	19262192	19262345	.	+	.	Parent=Os10t0504500-01
Chr10	irgsp1_rep	CDS	19262346	19262370	.	+	0	Parent=Os10t0504500-01
Chr10	irgsp1_rep	CDS	19262474	19262550	.	+	2	Parent=Os10t0504500-01
Chr10	irgsp1_rep	CDS	19263279	19263383	.	+	0	Parent=Os10t0504500-01
Chr10	irgsp1_rep	three_prime_UTR	19263384	19263384	.	+	.	Parent=Os10t0504500-01
Chr10	irgsp1_rep	three_prime_UTR	19273972	19274233	.	+	.	Parent=Os10t0504500-01
Chr10	irgsp1_rep	mRNA	19279579	19281435	.	+	.	ID=Os10t0504600-01;Name=Os10t0504600-01;Locus_id=Os10g0504600;Oryzabase Gene Symbol Synonym(s)=SIP24;Oryzabase Gene Name Synonym(s)=myosin%2C SKIP interacting protein 24%2C SKIPa-interacting protein 24%2C SKIPa-interacting protein 24;Note=Similar to SKIP interacting protein 24 (Fragment).;Transcript_evidence=AK064441 (DDBJ%2C Best hit);ORF_evidence=B8Q8B0 (UniProt);InterPro=Prefoldin (IPR009053);NIAS_FLcDNA=002-110-E06;Oryzabase=16278;Expression=AK064441;TENOR=Os10t0504600-01;KEGG=Os10t0504600-01
Chr10	irgsp1_rep	five_prime_UTR	19279579	19279580	.	+	.	Parent=Os10t0504600-01
Chr10	irgsp1_rep	CDS	19279581	19280120	.	+	0	Parent=Os10t0504600-01
Chr10	irgsp1_rep	CDS	19280687	19280808	.	+	0	Parent=Os10t0504600-01
Chr10	irgsp1_rep	CDS	19280910	19281096	.	+	1	Parent=Os10t0504600-01
Chr10	irgsp1_rep	three_prime_UTR	19281097	19281435	.	+	.	Parent=Os10t0504600-01
Chr10	irgsp1_rep	mRNA	19288018	19288320	.	-	.	ID=Os10t0504650-00;Name=Os10t0504650-00;Locus_id=Os10g0504650;Oryzabase Gene Symbol Synonym(s)=OsLTP2.7%2C OsLtpII.7;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein 2.7%2C lipid transfer protein 2.7%2C type 2 non-specific lipid transfer protein 7;Note=Similar to nonspecific lipid-transfer protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7G2C5 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);Oryzabase=13535;TENOR=Os10t0504650-00;KEGG=Os10t0504650-00
Chr10	irgsp1_rep	CDS	19288018	19288320	.	-	0	Parent=Os10t0504650-00
Chr10	irgsp1_rep	mRNA	19303783	19304325	.	+	.	ID=Os10t0504900-01;Name=Os10t0504900-01;Locus_id=Os10g0504900;Oryzabase Gene Symbol Synonym(s)=OsLTP2.9%2C OsLtpII.9%2C LTP2.9%2C LtpII.9;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein 2.9%2C lipid transfer protein 2.9%2C type 2 non-specific lipid transfer protein 9;Note=Similar to Lipid transfer protein.;Transcript_evidence=AK063117 (DDBJ%2C Best hit);ORF_evidence=A6N1A5 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=001-111-E03;Oryzabase=13537;Expression=AK063117;TENOR=Os10t0504900-01;KEGG=Os10t0504900-01
Chr10	irgsp1_rep	five_prime_UTR	19303783	19303856	.	+	.	Parent=Os10t0504900-01
Chr10	irgsp1_rep	CDS	19303857	19303901	.	+	0	Parent=Os10t0504900-01
Chr10	irgsp1_rep	CDS	19303959	19304162	.	+	0	Parent=Os10t0504900-01
Chr10	irgsp1_rep	three_prime_UTR	19304163	19304325	.	+	.	Parent=Os10t0504900-01
Chr10	irgsp1_rep	mRNA	19307415	19308068	.	-	.	ID=Os10t0505000-01;Name=Os10t0505000-01;Locus_id=Os10g0505000;Oryzabase Gene Symbol Synonym(s)=OsLTP2.10%2C OsLtpII.10;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein 2.10%2C lipid transfer protein 2.10%2C type 2 non-specific lipid transfer protein 10;Note=Plant lipid transfer protein and hydrophobic protein%2C helical domain containing protein.;Transcript_evidence=AK287776 (DDBJ%2C Best hit);ORF_evidence=NP_001150064.1 (RefSeq);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=J065170J11;Oryzabase=13538;TENOR=Os10t0505000-01;KEGG=Os10t0505000-01
Chr10	irgsp1_rep	five_prime_UTR	19308019	19308068	.	-	.	Parent=Os10t0505000-01
Chr10	irgsp1_rep	CDS	19307716	19308018	.	-	0	Parent=Os10t0505000-01
Chr10	irgsp1_rep	three_prime_UTR	19307415	19307715	.	-	.	Parent=Os10t0505000-01
Chr10	irgsp1_rep	mRNA	19330390	19330970	.	-	.	ID=Os10t0505500-01;Name=Os10t0505500-01;Locus_id=Os10g0505500;RAP-DB Gene Symbol Synonym(s)=OsLTPL159;Oryzabase Gene Symbol Synonym(s)=OsLTP2.11%2C OsLtpII.11%2C LTP2.11%2C LtpII.11%2C OsLTPL159%2C LTPL159;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein 2.11%2C lipid transfer protein 2.11%2C type 2 non-specific lipid transfer protein 11;Note=Nonspecific lipid transfer protein%2C Cold tolerance;Transcript_evidence=AK062529;ORF_evidence=Q7G2B6;GO=Biological Process: lipid transport (GO:0006869);InterPro=Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily (IPR036312),Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain (IPR016140),Non-specific lipid-transfer protein type 2 (IPR033872);NIAS_FLcDNA=001-104-E01;Manual Curation=September 3%2C 2019;Literature_PMID=31469486;Oryzabase=13539;Expression=AK062529;TENOR=Os10t0505500-01;KEGG=Os10t0505500-01;Subcellular location=plasma membrane (GO:0005886)
Chr10	irgsp1_rep	five_prime_UTR	19330903	19330970	.	-	.	Parent=Os10t0505500-01
Chr10	irgsp1_rep	CDS	19330618	19330902	.	-	0	Parent=Os10t0505500-01
Chr10	irgsp1_rep	three_prime_UTR	19330390	19330617	.	-	.	Parent=Os10t0505500-01
Chr10	irgsp1_rep	mRNA	19335093	19335615	.	-	.	ID=Os10t0505700-01;Name=Os10t0505700-01;Locus_id=Os10g0505700;Oryzabase Gene Symbol Synonym(s)=OsLTP2.12%2C OsLtpII.12;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein 2.12%2C lipid transfer protein 2.12%2C type 2 non-specific lipid transfer protein 12;Note=Similar to Nonspecific lipid-transfer protein 2 (nsLTP2) (7 kDa lipid transfer protein).;Transcript_evidence=AK063196 (DDBJ%2C Best hit);ORF_evidence=NP_001148419.1 (RefSeq);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=001-112-C03;Oryzabase=13540;Expression=AK063196;TENOR=Os10t0505700-01;KEGG=Os10t0505700-01
Chr10	irgsp1_rep	five_prime_UTR	19335534	19335615	.	-	.	Parent=Os10t0505700-01
Chr10	irgsp1_rep	CDS	19335258	19335533	.	-	0	Parent=Os10t0505700-01
Chr10	irgsp1_rep	three_prime_UTR	19335164	19335257	.	-	.	Parent=Os10t0505700-01
Chr10	irgsp1_rep	three_prime_UTR	19335093	19335143	.	-	.	Parent=Os10t0505700-01
Chr10	irgsp1_rep	mRNA	19346334	19348263	.	+	.	ID=Os10t0505900-01;Name=Os10t0505900-01;Locus_id=Os10g0505900;Note=Conserved hypothetical protein.;Transcript_evidence=AK062588 (DDBJ%2C Best hit);ORF_evidence=Q53RR4 (UniProt);NIAS_FLcDNA=001-100-G05;Expression=AK062588;TENOR=Os10t0505900-01;KEGG=Os10t0505900-01
Chr10	irgsp1_rep	five_prime_UTR	19346334	19346395	.	+	.	Parent=Os10t0505900-01
Chr10	irgsp1_rep	CDS	19346396	19346459	.	+	0	Parent=Os10t0505900-01
Chr10	irgsp1_rep	CDS	19346571	19346882	.	+	2	Parent=Os10t0505900-01
Chr10	irgsp1_rep	CDS	19346984	19347856	.	+	2	Parent=Os10t0505900-01
Chr10	irgsp1_rep	CDS	19347968	19348059	.	+	2	Parent=Os10t0505900-01
Chr10	irgsp1_rep	three_prime_UTR	19348060	19348263	.	+	.	Parent=Os10t0505900-01
Chr10	irgsp1_rep	mRNA	19350042	19351774	.	+	.	ID=Os10t0506000-00;Name=Os10t0506000-00;Locus_id=Os10g0506000;Oryzabase Gene Symbol Synonym(s)=PPR12;Oryzabase Gene Name Synonym(s)=pentatricopeptide repeat motif containing gene 12%2C PPR motif-containing gene 12;Note=Pentatricopeptide repeat containing protein.;Transcript_evidence=BT041713 (DDBJ);ORF_evidence=NP_191564.1 (RefSeq);InterPro=Pentatricopeptide repeat (IPR002885);Oryzabase=19666;TENOR=Os10t0506000-00;KEGG=Os10t0506000-00
Chr10	irgsp1_rep	five_prime_UTR	19350042	19350160	.	+	.	Parent=Os10t0506000-00
Chr10	irgsp1_rep	CDS	19350161	19351684	.	+	0	Parent=Os10t0506000-00
Chr10	irgsp1_rep	three_prime_UTR	19351685	19351774	.	+	.	Parent=Os10t0506000-00
Chr10	irgsp1_rep	mRNA	19352996	19354079	.	-	.	ID=Os10t0506100-01;Name=Os10t0506100-01;Locus_id=Os10g0506100;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK120420 (DDBJ%2C Best hit);ORF_evidence=NP_568436.1 (RefSeq);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);NIAS_FLcDNA=J013094M15;Expression=AK120420;TENOR=Os10t0506100-01;KEGG=Os10t0506100-01
Chr10	irgsp1_rep	five_prime_UTR	19354008	19354079	.	-	.	Parent=Os10t0506100-01
Chr10	irgsp1_rep	CDS	19353830	19354007	.	-	0	Parent=Os10t0506100-01
Chr10	irgsp1_rep	CDS	19353157	19353386	.	-	2	Parent=Os10t0506100-01
Chr10	irgsp1_rep	three_prime_UTR	19352996	19353156	.	-	.	Parent=Os10t0506100-01
Chr10	irgsp1_rep	mRNA	19356762	19363202	.	+	.	ID=Os10t0506200-00;Name=Os10t0506200-00;Locus_id=Os10g0506200;CGSNL Gene Symbol=VALRS3;CGSNL Gene Name=VAL-TRNA SYNTHETASE 3;Oryzabase Gene Symbol Synonym(s)=OsValRS3%2C ValRS3;Oryzabase Gene Name Synonym(s)=Val-tRNA Synthetase 3;Note=Similar to Valyl-tRNA synthetase.;Transcript_evidence=AK249370 (DDBJ);ORF_evidence=Q7G2B1 (UniProt);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: valyl-tRNA aminoacylation (GO:0006438),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: valine-tRNA ligase activity (GO:0004832),Molecular Function: ATP binding (GO:0005524);InterPro=Aminoacyl-tRNA synthetase%2C class I%2C conserved site (IPR001412),Aminoacyl-tRNA synthetase%2C class Ia (IPR002300),Valyl-tRNA synthetase (IPR002303),Valyl/Leucyl/Isoleucyl-tRNA synthetase%2C class Ia%2C editing domain (IPR009008),Aminoacyl-tRNA synthetase%2C class 1a%2C anticodon-binding (IPR009080),tRNA-binding arm (IPR010978),Valyl/Leucyl/Isoleucyl-tRNA synthetase%2C class I%2C anticodon-binding (IPR013155),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Valyl-tRNA synthetase%2C class Ia%2C tRNA-binding arm (IPR019499);Oryzabase=20930;TENOR=Os10t0506200-00;KEGG=Os10t0506200-00 (EC:6.1.1.9)
Chr10	irgsp1_rep	CDS	19356762	19356839	.	+	0	Parent=Os10t0506200-00
Chr10	irgsp1_rep	CDS	19356951	19357010	.	+	0	Parent=Os10t0506200-00
Chr10	irgsp1_rep	CDS	19357084	19357253	.	+	0	Parent=Os10t0506200-00
Chr10	irgsp1_rep	CDS	19357395	19357467	.	+	1	Parent=Os10t0506200-00
Chr10	irgsp1_rep	CDS	19357627	19357692	.	+	0	Parent=Os10t0506200-00
Chr10	irgsp1_rep	CDS	19357783	19357866	.	+	0	Parent=Os10t0506200-00
Chr10	irgsp1_rep	CDS	19358048	19358125	.	+	0	Parent=Os10t0506200-00
Chr10	irgsp1_rep	CDS	19358220	19358303	.	+	0	Parent=Os10t0506200-00
Chr10	irgsp1_rep	CDS	19358660	19358739	.	+	0	Parent=Os10t0506200-00
Chr10	irgsp1_rep	CDS	19358889	19358946	.	+	1	Parent=Os10t0506200-00
Chr10	irgsp1_rep	CDS	19359031	19359333	.	+	0	Parent=Os10t0506200-00
Chr10	irgsp1_rep	CDS	19359459	19359629	.	+	0	Parent=Os10t0506200-00
Chr10	irgsp1_rep	CDS	19360112	19360302	.	+	0	Parent=Os10t0506200-00
Chr10	irgsp1_rep	CDS	19360401	19360803	.	+	1	Parent=Os10t0506200-00
Chr10	irgsp1_rep	CDS	19361059	19361310	.	+	0	Parent=Os10t0506200-00
Chr10	irgsp1_rep	CDS	19361391	19361888	.	+	0	Parent=Os10t0506200-00
Chr10	irgsp1_rep	CDS	19362171	19362268	.	+	0	Parent=Os10t0506200-00
Chr10	irgsp1_rep	CDS	19362412	19362511	.	+	1	Parent=Os10t0506200-00
Chr10	irgsp1_rep	CDS	19362751	19362896	.	+	0	Parent=Os10t0506200-00
Chr10	irgsp1_rep	CDS	19363010	19363166	.	+	1	Parent=Os10t0506200-00
Chr10	irgsp1_rep	three_prime_UTR	19363167	19363202	.	+	.	Parent=Os10t0506200-00
Chr10	irgsp1_rep	mRNA	19374119	19379501	.	-	.	ID=Os10t0506800-01;Name=Os10t0506800-01;Locus_id=Os10g0506800;Oryzabase Gene Symbol Synonym(s)=OsSET39;Oryzabase Gene Name Synonym(s)=SET protein 39;Note=SET domain containing protein.;Transcript_evidence=AK067969 (DDBJ%2C Best hit);ORF_evidence=Q7G2A7 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=SET domain (IPR001214),Zinc finger%2C MYND-type (IPR002893),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J013122F06;Oryzabase=13402;Expression=AK067969;TENOR=Os10t0506800-01;KEGG=Os10t0506800-01
Chr10	irgsp1_rep	five_prime_UTR	19379467	19379501	.	-	.	Parent=Os10t0506800-01
Chr10	irgsp1_rep	CDS	19379338	19379466	.	-	0	Parent=Os10t0506800-01
Chr10	irgsp1_rep	CDS	19379091	19379225	.	-	0	Parent=Os10t0506800-01
Chr10	irgsp1_rep	CDS	19378640	19378726	.	-	0	Parent=Os10t0506800-01
Chr10	irgsp1_rep	CDS	19378366	19378437	.	-	0	Parent=Os10t0506800-01
Chr10	irgsp1_rep	CDS	19378012	19378222	.	-	0	Parent=Os10t0506800-01
Chr10	irgsp1_rep	CDS	19377806	19377924	.	-	2	Parent=Os10t0506800-01
Chr10	irgsp1_rep	CDS	19377169	19377555	.	-	0	Parent=Os10t0506800-01
Chr10	irgsp1_rep	CDS	19376948	19377082	.	-	0	Parent=Os10t0506800-01
Chr10	irgsp1_rep	CDS	19376211	19376342	.	-	0	Parent=Os10t0506800-01
Chr10	irgsp1_rep	CDS	19375724	19375879	.	-	0	Parent=Os10t0506800-01
Chr10	irgsp1_rep	CDS	19375405	19375638	.	-	0	Parent=Os10t0506800-01
Chr10	irgsp1_rep	CDS	19375159	19375322	.	-	0	Parent=Os10t0506800-01
Chr10	irgsp1_rep	CDS	19374947	19375061	.	-	1	Parent=Os10t0506800-01
Chr10	irgsp1_rep	CDS	19374765	19374845	.	-	0	Parent=Os10t0506800-01
Chr10	irgsp1_rep	CDS	19374415	19374639	.	-	0	Parent=Os10t0506800-01
Chr10	irgsp1_rep	three_prime_UTR	19374119	19374414	.	-	.	Parent=Os10t0506800-01
Chr10	irgsp1_rep	mRNA	19379767	19382017	.	+	.	ID=Os10t0506900-01;Name=Os10t0506900-01;Locus_id=Os10g0506900;Note=Hypothetical conserved gene.;Transcript_evidence=AK067420 (DDBJ%2C Best hit);ORF_evidence=B8BHS4 (UniProt);NIAS_FLcDNA=J013105D09;Expression=AK067420;TENOR=Os10t0506900-01;KEGG=Os10t0506900-01
Chr10	irgsp1_rep	five_prime_UTR	19379767	19379825	.	+	.	Parent=Os10t0506900-01
Chr10	irgsp1_rep	five_prime_UTR	19380299	19380935	.	+	.	Parent=Os10t0506900-01
Chr10	irgsp1_rep	CDS	19380936	19380969	.	+	0	Parent=Os10t0506900-01
Chr10	irgsp1_rep	CDS	19381056	19381213	.	+	2	Parent=Os10t0506900-01
Chr10	irgsp1_rep	CDS	19381322	19381624	.	+	0	Parent=Os10t0506900-01
Chr10	irgsp1_rep	three_prime_UTR	19381625	19382017	.	+	.	Parent=Os10t0506900-01
Chr10	irgsp1_rep	mRNA	19379767	19381868	.	+	.	ID=Os10t0506900-02;Name=Os10t0506900-02;Locus_id=Os10g0506900;Note=Conserved hypothetical protein.;Transcript_evidence=AK064891 (DDBJ%2C Best hit);ORF_evidence=Q53RN9 (UniProt);NIAS_FLcDNA=J013000K19;TENOR=Os10t0506900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	19379767	19381009	.	+	.	Parent=Os10t0506900-02
Chr10	irgsp1_rep	CDS	19381010	19381213	.	+	0	Parent=Os10t0506900-02
Chr10	irgsp1_rep	CDS	19381322	19381624	.	+	0	Parent=Os10t0506900-02
Chr10	irgsp1_rep	three_prime_UTR	19381625	19381868	.	+	.	Parent=Os10t0506900-02
Chr10	irgsp1_rep	mRNA	19379844	19380659	.	+	.	ID=Os10t0506900-03;Name=Os10t0506900-03;Locus_id=Os10g0506900;Note=Conserved hypothetical protein.;Transcript_evidence=AK100756 (DDBJ%2C Best hit);ORF_evidence=Q6ZHP0 (UniProt);NIAS_FLcDNA=J023118O21;Expression=AK100756;TENOR=Os10t0506900-03;KEGG=Os10t0506900-03
Chr10	irgsp1_rep	five_prime_UTR	19379844	19379871	.	+	.	Parent=Os10t0506900-03
Chr10	irgsp1_rep	CDS	19379872	19380567	.	+	0	Parent=Os10t0506900-03
Chr10	irgsp1_rep	three_prime_UTR	19380568	19380659	.	+	.	Parent=Os10t0506900-03
Chr10	irgsp1_rep	mRNA	19389025	19396741	.	+	.	ID=Os10t0507000-01;Name=Os10t0507000-01;Locus_id=Os10g0507000;Note=Conserved hypothetical protein.;Transcript_evidence=AK069829 (DDBJ%2C Best hit);ORF_evidence=Q8LN86 (UniProt);NIAS_FLcDNA=J023028J10;TENOR=Os10t0507000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	19389025	19389256	.	+	.	Parent=Os10t0507000-01
Chr10	irgsp1_rep	five_prime_UTR	19391652	19392356	.	+	.	Parent=Os10t0507000-01
Chr10	irgsp1_rep	CDS	19392357	19392878	.	+	0	Parent=Os10t0507000-01
Chr10	irgsp1_rep	three_prime_UTR	19392879	19393514	.	+	.	Parent=Os10t0507000-01
Chr10	irgsp1_rep	three_prime_UTR	19394270	19396741	.	+	.	Parent=Os10t0507000-01
Chr10	irgsp1_rep	mRNA	19399852	19400883	.	+	.	ID=Os10t0507150-00;Name=Os10t0507150-00;Locus_id=Os10g0507150;Note=Similar to Leucine Rich Repeat family protein%2C expressed.;Transcript_evidence=BT033528 (DDBJ);ORF_evidence=Q337E0 (UniProt);TENOR=Os10t0507150-00
Chr10	irgsp1_rep	CDS	19399852	19400883	.	+	0	Parent=Os10t0507150-00
Chr10	irgsp1_rep	mRNA	19413262	19414196	.	+	.	ID=Os10t0507500-00;Name=Os10t0507500-00;Locus_id=Os10g0507500;Note=Conserved hypothetical protein.;Transcript_evidence=FP097010 (DDBJ);ORF_evidence=B9G6J5 (UniProt);TENOR=Os10t0507500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	19413262	19413268	.	+	.	Parent=Os10t0507500-00
Chr10	irgsp1_rep	CDS	19413269	19414008	.	+	0	Parent=Os10t0507500-00
Chr10	irgsp1_rep	CDS	19414115	19414127	.	+	1	Parent=Os10t0507500-00
Chr10	irgsp1_rep	three_prime_UTR	19414128	19414196	.	+	.	Parent=Os10t0507500-00
Chr10	irgsp1_rep	mRNA	19415610	19418684	.	-	.	ID=Os10t0507600-01;Name=Os10t0507600-01;Locus_id=Os10g0507600;Note=PapD-like domain containing protein.;Transcript_evidence=AK058656 (DDBJ%2C Best hit);ORF_evidence=Q8LN94 (UniProt);GO=Molecular Function: structural molecule activity (GO:0005198);InterPro=Major sperm protein (IPR000535),PapD-like (IPR008962),Vesicle-associated membrane protein (IPR016763);NIAS_FLcDNA=001-018-F08;Expression=AK058656;TENOR=Os10t0507600-01;KEGG=Os10t0507600-01
Chr10	irgsp1_rep	CDS	19418630	19418684	.	-	0	Parent=Os10t0507600-01
Chr10	irgsp1_rep	CDS	19418421	19418491	.	-	2	Parent=Os10t0507600-01
Chr10	irgsp1_rep	CDS	19418206	19418287	.	-	0	Parent=Os10t0507600-01
Chr10	irgsp1_rep	CDS	19417976	19418091	.	-	2	Parent=Os10t0507600-01
Chr10	irgsp1_rep	CDS	19417691	19417897	.	-	0	Parent=Os10t0507600-01
Chr10	irgsp1_rep	CDS	19417532	19417600	.	-	0	Parent=Os10t0507600-01
Chr10	irgsp1_rep	CDS	19417342	19417383	.	-	0	Parent=Os10t0507600-01
Chr10	irgsp1_rep	CDS	19416806	19416883	.	-	0	Parent=Os10t0507600-01
Chr10	irgsp1_rep	CDS	19416006	19416008	.	-	0	Parent=Os10t0507600-01
Chr10	irgsp1_rep	three_prime_UTR	19415610	19416005	.	-	.	Parent=Os10t0507600-01
Chr10	irgsp1_rep	mRNA	19425724	19426140	.	-	.	ID=Os10t0507700-00;Name=Os10t0507700-00;Locus_id=Os10g0507700;Note=Conserved hypothetical protein.;Transcript_evidence=EU968230 (DDBJ);ORF_evidence=Q8LN95 (UniProt);TENOR=Os10t0507700-00
Chr10	irgsp1_rep	CDS	19425724	19426140	.	-	0	Parent=Os10t0507700-00
Chr10	irgsp1_rep	mRNA	19436052	19439762	.	-	.	ID=Os10t0507800-01;Name=Os10t0507800-01;Locus_id=Os10g0507800;Oryzabase Gene Symbol Synonym(s)=OsDjC73;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C73;Note=Similar to chaperone protein dnaJ 13.;Transcript_evidence=AK061575 (DDBJ%2C Best hit);ORF_evidence=B6T7S1 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=006-311-G04;Oryzabase=12230;TENOR=Os10t0507800-01
Chr10	irgsp1_rep	five_prime_UTR	19439644	19439762	.	-	.	Parent=Os10t0507800-01
Chr10	irgsp1_rep	CDS	19439500	19439643	.	-	0	Parent=Os10t0507800-01
Chr10	irgsp1_rep	CDS	19438157	19438443	.	-	0	Parent=Os10t0507800-01
Chr10	irgsp1_rep	CDS	19437253	19437450	.	-	1	Parent=Os10t0507800-01
Chr10	irgsp1_rep	CDS	19437053	19437167	.	-	1	Parent=Os10t0507800-01
Chr10	irgsp1_rep	CDS	19436052	19436109	.	-	0	Parent=Os10t0507800-01
Chr10	irgsp1_rep	mRNA	19431170	19439745	.	-	.	ID=Os10t0507800-02;Name=Os10t0507800-02;Locus_id=Os10g0507800;Oryzabase Gene Symbol Synonym(s)=OsDjC73;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C73;Note=Similar to Chaperone protein dnaJ 13.;Transcript_evidence=AK066499 (DDBJ%2C Best hit);ORF_evidence=B6T7S1 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Heat shock protein DnaJ%2C conserved site (IPR018253),DnaJ-like protein C11%2C C-terminal (IPR024586);NIAS_FLcDNA=J013073E12;Oryzabase=12230;TENOR=Os10t0507800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	19439644	19439745	.	-	.	Parent=Os10t0507800-02
Chr10	irgsp1_rep	CDS	19439500	19439643	.	-	0	Parent=Os10t0507800-02
Chr10	irgsp1_rep	CDS	19438157	19438443	.	-	0	Parent=Os10t0507800-02
Chr10	irgsp1_rep	CDS	19437253	19437450	.	-	1	Parent=Os10t0507800-02
Chr10	irgsp1_rep	CDS	19437053	19437167	.	-	1	Parent=Os10t0507800-02
Chr10	irgsp1_rep	CDS	19436023	19436109	.	-	0	Parent=Os10t0507800-02
Chr10	irgsp1_rep	CDS	19435295	19435383	.	-	0	Parent=Os10t0507800-02
Chr10	irgsp1_rep	CDS	19435104	19435188	.	-	1	Parent=Os10t0507800-02
Chr10	irgsp1_rep	CDS	19433452	19433505	.	-	0	Parent=Os10t0507800-02
Chr10	irgsp1_rep	CDS	19433161	19433241	.	-	0	Parent=Os10t0507800-02
Chr10	irgsp1_rep	CDS	19432907	19432984	.	-	0	Parent=Os10t0507800-02
Chr10	irgsp1_rep	CDS	19432071	19432310	.	-	0	Parent=Os10t0507800-02
Chr10	irgsp1_rep	CDS	19431622	19431729	.	-	0	Parent=Os10t0507800-02
Chr10	irgsp1_rep	CDS	19431462	19431518	.	-	0	Parent=Os10t0507800-02
Chr10	irgsp1_rep	three_prime_UTR	19431170	19431461	.	-	.	Parent=Os10t0507800-02
Chr10	irgsp1_rep	mRNA	19449352	19454860	.	+	.	ID=Os10t0508000-00;Name=Os10t0508000-00;Locus_id=Os10g0508000;Note=Similar to C-terminal peptide-binding protein 1.;Transcript_evidence=CT837938 (DDBJ%2C Best hit);ORF_evidence=Q1EPX7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: copper ion binding (GO:0005507),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Multicopper oxidase%2C type 1 (IPR001117),Cupredoxin (IPR008972),Multicopper oxidase%2C type 3 (IPR011707);TENOR=Os10t0508000-00;KEGG=Os10t0508000-00
Chr10	irgsp1_rep	five_prime_UTR	19449352	19449702	.	+	.	Parent=Os10t0508000-00
Chr10	irgsp1_rep	CDS	19449703	19449845	.	+	0	Parent=Os10t0508000-00
Chr10	irgsp1_rep	CDS	19449954	19450067	.	+	1	Parent=Os10t0508000-00
Chr10	irgsp1_rep	CDS	19450139	19450409	.	+	1	Parent=Os10t0508000-00
Chr10	irgsp1_rep	CDS	19450505	19450643	.	+	0	Parent=Os10t0508000-00
Chr10	irgsp1_rep	CDS	19451512	19451855	.	+	2	Parent=Os10t0508000-00
Chr10	irgsp1_rep	three_prime_UTR	19451856	19451874	.	+	.	Parent=Os10t0508000-00
Chr10	irgsp1_rep	three_prime_UTR	19452495	19452860	.	+	.	Parent=Os10t0508000-00
Chr10	irgsp1_rep	three_prime_UTR	19453154	19453232	.	+	.	Parent=Os10t0508000-00
Chr10	irgsp1_rep	three_prime_UTR	19453802	19454004	.	+	.	Parent=Os10t0508000-00
Chr10	irgsp1_rep	three_prime_UTR	19454410	19454860	.	+	.	Parent=Os10t0508000-00
Chr10	irgsp1_rep	mRNA	19449767	19453989	.	-	.	ID=Os10t0508050-00;Name=Os10t0508050-00;Locus_id=Os10g0508050;Note=Hypothetical protein.;Transcript_evidence=tplb0021n10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0508050-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	19453750	19453989	.	-	.	Parent=Os10t0508050-00
Chr10	irgsp1_rep	five_prime_UTR	19452871	19452897	.	-	.	Parent=Os10t0508050-00
Chr10	irgsp1_rep	CDS	19452492	19452870	.	-	0	Parent=Os10t0508050-00
Chr10	irgsp1_rep	CDS	19451780	19451871	.	-	2	Parent=Os10t0508050-00
Chr10	irgsp1_rep	three_prime_UTR	19451508	19451779	.	-	.	Parent=Os10t0508050-00
Chr10	irgsp1_rep	three_prime_UTR	19450504	19450597	.	-	.	Parent=Os10t0508050-00
Chr10	irgsp1_rep	three_prime_UTR	19450131	19450408	.	-	.	Parent=Os10t0508050-00
Chr10	irgsp1_rep	three_prime_UTR	19450000	19450064	.	-	.	Parent=Os10t0508050-00
Chr10	irgsp1_rep	three_prime_UTR	19449767	19449891	.	-	.	Parent=Os10t0508050-00
Chr10	irgsp1_rep	mRNA	19462118	19463978	.	+	.	ID=Os10t0508100-01;Name=Os10t0508100-01;Locus_id=Os10g0508100;RAP-DB Gene Symbol Synonym(s)=GFR1;RAP-DB Gene Name Synonym(s)=GRAIN-FILLING RATE 1;CGSNL Gene Symbol=GFR1;CGSNL Gene Name=GRAIN-FILLING RATE1;Oryzabase Gene Symbol Synonym(s)=OsGFR1;Oryzabase Gene Name Synonym(s)=GRAIN-FILLING RATE 1;Note=DUF641 domain containing protein%2C Regulation of grain-filling rate;Transcript_evidence=AK287902;ORF_evidence=Q8L4S9;InterPro=Domain of unknown function DUF641%2C plant (IPR006943);NIAS_FLcDNA=J065211E24;Manual Curation=September 19%2C 2019;Literature_PMID=31519786;Oryzabase=23304;TENOR=Os10t0508100-01;KEGG=Os10t0508100-01;Subcellular location=cell membrane (GO:0005886)
Chr10	irgsp1_rep	five_prime_UTR	19462118	19462302	.	+	.	Parent=Os10t0508100-01
Chr10	irgsp1_rep	CDS	19462303	19463715	.	+	0	Parent=Os10t0508100-01
Chr10	irgsp1_rep	three_prime_UTR	19463716	19463978	.	+	.	Parent=Os10t0508100-01
Chr10	irgsp1_rep	mRNA	19471069	19475406	.	-	.	ID=Os10t0508300-01;Name=Os10t0508300-01;Locus_id=Os10g0508300;RAP-DB Gene Symbol Synonym(s)=YAB3%2C OsYAB3%2C OsYAB4;RAP-DB Gene Name Synonym(s)=YABBY3%2C YABBY 3%2C OsYABBY3%2C Os YABBY3;CGSNL Gene Symbol=YAB3;CGSNL Gene Name=YABBY3;Oryzabase Gene Symbol Synonym(s)=OsYAB3%2C OsYAB4%2C TOB3;Oryzabase Gene Name Synonym(s)=YABBY 3%2C OsYABBY3%2C Os YABBY3%2C TONGARI-BOUSHI 3%2C TONGARI-BOUSHI3;Note=YABBY family transcription factor%2C Leaf development;Transcript_evidence=AB274015;ORF_evidence=Q8L556;GO=Biological Process: multicellular organismal development (GO:0007275);InterPro=YABBY protein (IPR006780),High mobility group box domain (IPR009071);Manual Curation=March 15%2C 2016;Literature_PMID=17351053,17216490;Oryzabase=10361;TENOR=Os10t0508300-00
Chr10	irgsp1_rep	five_prime_UTR	19475229	19475406	.	-	.	Parent=Os10t0508300-01
Chr10	irgsp1_rep	CDS	19475010	19475228	.	-	0	Parent=Os10t0508300-01
Chr10	irgsp1_rep	CDS	19474680	19474904	.	-	0	Parent=Os10t0508300-01
Chr10	irgsp1_rep	CDS	19474376	19474574	.	-	0	Parent=Os10t0508300-01
Chr10	irgsp1_rep	CDS	19473792	19473840	.	-	2	Parent=Os10t0508300-01
Chr10	irgsp1_rep	CDS	19473111	19473186	.	-	1	Parent=Os10t0508300-01
Chr10	irgsp1_rep	CDS	19472768	19472845	.	-	0	Parent=Os10t0508300-01
Chr10	irgsp1_rep	CDS	19471273	19471368	.	-	0	Parent=Os10t0508300-01
Chr10	irgsp1_rep	three_prime_UTR	19471069	19471272	.	-	.	Parent=Os10t0508300-01
Chr10	irgsp1_rep	mRNA	19512580	19516819	.	+	.	ID=Os10t0508400-01;Name=Os10t0508400-01;Locus_id=Os10g0508400;Note=Similar to Methionine aminopeptidase-like protein.;Transcript_evidence=AK066207 (DDBJ%2C Best hit);ORF_evidence=B9G6J9 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: cellular process (GO:0009987),Molecular Function: aminopeptidase activity (GO:0004177),Molecular Function: metalloexopeptidase activity (GO:0008235),Molecular Function: zinc ion binding (GO:0008270);InterPro=Peptidase M24%2C structural domain (IPR000994),Peptidase M24%2C methionine aminopeptidase (IPR001714),Peptidase M24A%2C methionine aminopeptidase%2C subfamily 1 (IPR002467),Zinc finger%2C MYND-type (IPR002893);NIAS_FLcDNA=J013056N09;Expression=AK066207;TENOR=Os10t0508400-01;KEGG=Os10t0508400-01 (EC:3.4.11.18)
Chr10	irgsp1_rep	five_prime_UTR	19512580	19512694	.	+	.	Parent=Os10t0508400-01
Chr10	irgsp1_rep	five_prime_UTR	19512837	19512855	.	+	.	Parent=Os10t0508400-01
Chr10	irgsp1_rep	CDS	19512856	19512920	.	+	0	Parent=Os10t0508400-01
Chr10	irgsp1_rep	CDS	19513014	19513064	.	+	1	Parent=Os10t0508400-01
Chr10	irgsp1_rep	CDS	19513803	19513958	.	+	1	Parent=Os10t0508400-01
Chr10	irgsp1_rep	CDS	19514177	19514252	.	+	1	Parent=Os10t0508400-01
Chr10	irgsp1_rep	CDS	19514446	19514493	.	+	0	Parent=Os10t0508400-01
Chr10	irgsp1_rep	CDS	19514574	19514618	.	+	0	Parent=Os10t0508400-01
Chr10	irgsp1_rep	CDS	19514709	19514808	.	+	0	Parent=Os10t0508400-01
Chr10	irgsp1_rep	CDS	19514967	19515018	.	+	2	Parent=Os10t0508400-01
Chr10	irgsp1_rep	CDS	19515098	19515139	.	+	1	Parent=Os10t0508400-01
Chr10	irgsp1_rep	CDS	19515244	19515305	.	+	1	Parent=Os10t0508400-01
Chr10	irgsp1_rep	CDS	19515386	19515484	.	+	2	Parent=Os10t0508400-01
Chr10	irgsp1_rep	CDS	19515665	19515738	.	+	2	Parent=Os10t0508400-01
Chr10	irgsp1_rep	CDS	19515850	19515919	.	+	0	Parent=Os10t0508400-01
Chr10	irgsp1_rep	CDS	19516038	19516101	.	+	2	Parent=Os10t0508400-01
Chr10	irgsp1_rep	CDS	19516201	19516291	.	+	1	Parent=Os10t0508400-01
Chr10	irgsp1_rep	CDS	19516456	19516533	.	+	0	Parent=Os10t0508400-01
Chr10	irgsp1_rep	three_prime_UTR	19516534	19516819	.	+	.	Parent=Os10t0508400-01
Chr10	irgsp1_rep	mRNA	19517142	19520791	.	-	.	ID=Os10t0508500-00;Name=Os10t0508500-00;Locus_id=Os10g0508500;Note=Similar to tubulin folding cofactor.;Transcript_evidence=BT041825 (DDBJ);ORF_evidence=XP_002320715.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),Tubulin-specific chaperone D%2C C-terminal (IPR022577);TENOR=Os10t0508500-00;KEGG=Os10t0508500-00
Chr10	irgsp1_rep	CDS	19520564	19520791	.	-	0	Parent=Os10t0508500-00
Chr10	irgsp1_rep	CDS	19519675	19519899	.	-	0	Parent=Os10t0508500-00
Chr10	irgsp1_rep	CDS	19519032	19519583	.	-	0	Parent=Os10t0508500-00
Chr10	irgsp1_rep	CDS	19518355	19518624	.	-	0	Parent=Os10t0508500-00
Chr10	irgsp1_rep	CDS	19518177	19518218	.	-	0	Parent=Os10t0508500-00
Chr10	irgsp1_rep	CDS	19517577	19517762	.	-	0	Parent=Os10t0508500-00
Chr10	irgsp1_rep	CDS	19517142	19517435	.	-	0	Parent=Os10t0508500-00
Chr10	irgsp1_rep	mRNA	19525627	19528347	.	+	.	ID=Os10t0508600-01;Name=Os10t0508600-01;Locus_id=Os10g0508600;Note=Protein of unknown function DUF1352 domain containing protein.;Transcript_evidence=AK103246 (DDBJ%2C Best hit);ORF_evidence=Q8LN74 (UniProt);InterPro=Protein of unknown function DUF1352 (IPR009787);NIAS_FLcDNA=J033123K10;Expression=AK103246;TENOR=Os10t0508600-01;KEGG=Os10t0508600-01
Chr10	irgsp1_rep	CDS	19525627	19525771	.	+	0	Parent=Os10t0508600-01
Chr10	irgsp1_rep	CDS	19525870	19525925	.	+	2	Parent=Os10t0508600-01
Chr10	irgsp1_rep	CDS	19526028	19526151	.	+	0	Parent=Os10t0508600-01
Chr10	irgsp1_rep	CDS	19526882	19526988	.	+	2	Parent=Os10t0508600-01
Chr10	irgsp1_rep	CDS	19528008	19528074	.	+	0	Parent=Os10t0508600-01
Chr10	irgsp1_rep	CDS	19528161	19528240	.	+	2	Parent=Os10t0508600-01
Chr10	irgsp1_rep	three_prime_UTR	19528241	19528347	.	+	.	Parent=Os10t0508600-01
Chr10	irgsp1_rep	mRNA	19530118	19532281	.	-	.	ID=Os10t0508700-01;Name=Os10t0508700-01;Locus_id=Os10g0508700;Note=Pectinesterase inhibitor domain containing protein.;Transcript_evidence=AK060639 (DDBJ%2C Best hit);ORF_evidence=NP_001152421.1 (RefSeq);GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);NIAS_FLcDNA=001-027-D09;Expression=AK060639;TENOR=Os10t0508700-01;KEGG=Os10t0508700-01
Chr10	irgsp1_rep	five_prime_UTR	19532225	19532281	.	-	.	Parent=Os10t0508700-01
Chr10	irgsp1_rep	CDS	19531580	19532224	.	-	0	Parent=Os10t0508700-01
Chr10	irgsp1_rep	three_prime_UTR	19531523	19531579	.	-	.	Parent=Os10t0508700-01
Chr10	irgsp1_rep	three_prime_UTR	19530118	19530587	.	-	.	Parent=Os10t0508700-01
Chr10	irgsp1_rep	mRNA	19539636	19540530	.	-	.	ID=Os10t0508900-01;Name=Os10t0508900-01;Locus_id=Os10g0508900;Note=Conserved hypothetical protein.;Transcript_evidence=AK110739 (DDBJ%2C Best hit);ORF_evidence=A2Z978 (UniProt);NIAS_FLcDNA=002-170-F06;Expression=AK110739;TENOR=Os10t0508900-01;KEGG=Os10t0508900-01
Chr10	irgsp1_rep	five_prime_UTR	19540445	19540530	.	-	.	Parent=Os10t0508900-01
Chr10	irgsp1_rep	CDS	19539956	19540444	.	-	0	Parent=Os10t0508900-01
Chr10	irgsp1_rep	three_prime_UTR	19539636	19539955	.	-	.	Parent=Os10t0508900-01
Chr10	irgsp1_rep	mRNA	19543841	19549093	.	+	.	ID=Os10t0509000-01;Name=Os10t0509000-01;Locus_id=Os10g0509000;Oryzabase Gene Name Synonym(s)=MutS homologue;Note=Similar to MutS domain V family protein%2C expressed.;Transcript_evidence=AK105809 (DDBJ%2C Best hit);ORF_evidence=Q7G278 (UniProt);GO=Biological Process: mismatch repair (GO:0006298),Molecular Function: ATP binding (GO:0005524),Molecular Function: mismatched DNA binding (GO:0030983);InterPro=DNA mismatch repair protein MutS%2C C-terminal (IPR000432);NIAS_FLcDNA=001-203-B11;Oryzabase=21284;TENOR=Os10t0509000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	19543841	19543841	.	+	.	Parent=Os10t0509000-01
Chr10	irgsp1_rep	CDS	19543842	19543895	.	+	0	Parent=Os10t0509000-01
Chr10	irgsp1_rep	CDS	19543972	19544031	.	+	0	Parent=Os10t0509000-01
Chr10	irgsp1_rep	CDS	19544112	19544354	.	+	0	Parent=Os10t0509000-01
Chr10	irgsp1_rep	CDS	19544555	19544638	.	+	0	Parent=Os10t0509000-01
Chr10	irgsp1_rep	CDS	19544710	19544857	.	+	0	Parent=Os10t0509000-01
Chr10	irgsp1_rep	CDS	19545116	19545243	.	+	2	Parent=Os10t0509000-01
Chr10	irgsp1_rep	CDS	19545333	19545380	.	+	0	Parent=Os10t0509000-01
Chr10	irgsp1_rep	CDS	19546051	19546181	.	+	0	Parent=Os10t0509000-01
Chr10	irgsp1_rep	CDS	19546864	19546946	.	+	1	Parent=Os10t0509000-01
Chr10	irgsp1_rep	CDS	19547494	19547597	.	+	2	Parent=Os10t0509000-01
Chr10	irgsp1_rep	CDS	19547743	19547813	.	+	0	Parent=Os10t0509000-01
Chr10	irgsp1_rep	CDS	19548220	19548518	.	+	1	Parent=Os10t0509000-01
Chr10	irgsp1_rep	CDS	19548636	19548811	.	+	2	Parent=Os10t0509000-01
Chr10	irgsp1_rep	three_prime_UTR	19548812	19549093	.	+	.	Parent=Os10t0509000-01
Chr10	irgsp1_rep	mRNA	19555089	19556953	.	+	.	ID=Os10t0509100-01;Name=Os10t0509100-01;Locus_id=Os10g0509100;Note=Similar to predicted protein.;Transcript_evidence=AK069166 (DDBJ%2C Best hit);ORF_evidence=B8BHT6 (UniProt);NIAS_FLcDNA=J023007G19;Expression=AK069166;TENOR=Os10t0509100-01;KEGG=Os10t0509100-01
Chr10	irgsp1_rep	five_prime_UTR	19555089	19555284	.	+	.	Parent=Os10t0509100-01
Chr10	irgsp1_rep	five_prime_UTR	19556178	19556243	.	+	.	Parent=Os10t0509100-01
Chr10	irgsp1_rep	CDS	19556244	19556675	.	+	0	Parent=Os10t0509100-01
Chr10	irgsp1_rep	three_prime_UTR	19556676	19556953	.	+	.	Parent=Os10t0509100-01
Chr10	irgsp1_rep	mRNA	19555939	19558369	.	+	.	ID=Os10t0509100-02;Name=Os10t0509100-02;Locus_id=Os10g0509100;Note=Similar to predicted protein.;Transcript_evidence=AK067663 (DDBJ%2C Best hit);ORF_evidence=B8BHT6 (UniProt);NIAS_FLcDNA=J013120I12;Expression=AK067663;TENOR=Os10t0509100-02;KEGG=Os10t0509100-02
Chr10	irgsp1_rep	five_prime_UTR	19555939	19556243	.	+	.	Parent=Os10t0509100-02
Chr10	irgsp1_rep	CDS	19556244	19556675	.	+	0	Parent=Os10t0509100-02
Chr10	irgsp1_rep	three_prime_UTR	19556676	19557564	.	+	.	Parent=Os10t0509100-02
Chr10	irgsp1_rep	three_prime_UTR	19558010	19558369	.	+	.	Parent=Os10t0509100-02
Chr10	irgsp1_rep	mRNA	19561807	19568655	.	+	.	ID=Os10t0509200-01;Name=Os10t0509200-01;Locus_id=Os10g0509200;Note=Similar to plastid-lipid associated protein PAP / fibrillin family protein.;Transcript_evidence=AK241632 (DDBJ%2C Best hit);ORF_evidence=NP_566091.1 (RefSeq);GO=Cellular Component: chloroplast (GO:0009507),Molecular Function: structural molecule activity (GO:0005198);InterPro=Plastid lipid-associated protein/fibrillin conserved domain (IPR006843);NIAS_FLcDNA=J065187P11;TENOR=Os10t0509200-01;KEGG=Os10t0509200-01
Chr10	irgsp1_rep	five_prime_UTR	19561807	19561832	.	+	.	Parent=Os10t0509200-01
Chr10	irgsp1_rep	CDS	19561833	19562006	.	+	0	Parent=Os10t0509200-01
Chr10	irgsp1_rep	CDS	19562085	19562192	.	+	0	Parent=Os10t0509200-01
Chr10	irgsp1_rep	CDS	19562300	19562440	.	+	0	Parent=Os10t0509200-01
Chr10	irgsp1_rep	CDS	19562781	19562876	.	+	0	Parent=Os10t0509200-01
Chr10	irgsp1_rep	CDS	19563747	19563827	.	+	0	Parent=Os10t0509200-01
Chr10	irgsp1_rep	CDS	19564339	19564425	.	+	0	Parent=Os10t0509200-01
Chr10	irgsp1_rep	CDS	19564741	19564796	.	+	0	Parent=Os10t0509200-01
Chr10	irgsp1_rep	CDS	19564871	19564985	.	+	1	Parent=Os10t0509200-01
Chr10	irgsp1_rep	three_prime_UTR	19564986	19565044	.	+	.	Parent=Os10t0509200-01
Chr10	irgsp1_rep	three_prime_UTR	19568394	19568655	.	+	.	Parent=Os10t0509200-01
Chr10	irgsp1_rep	mRNA	19568799	19569328	.	-	.	ID=Os10t0509401-00;Name=Os10t0509401-00;Locus_id=Os10g0509401;Note=Conserved hypothetical protein.;Transcript_evidence=FP097299 (DDBJ);ORF_evidence=NP_001176234.1 (RefSeq);TENOR=Os10t0509401-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	19568990	19569328	.	-	0	Parent=Os10t0509401-00
Chr10	irgsp1_rep	three_prime_UTR	19568799	19568989	.	-	.	Parent=Os10t0509401-00
Chr10	irgsp1_rep	mRNA	19583304	19583594	.	-	.	ID=Os10t0509600-00;Name=Os10t0509600-00;Locus_id=Os10g0509600;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q94GY0 (UniProt);TENOR=Os10t0509600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	19583304	19583594	.	-	0	Parent=Os10t0509600-00
Chr10	irgsp1_rep	mRNA	19592982	19594267	.	+	.	ID=Os10t0509700-01;Name=Os10t0509700-01;Locus_id=Os10g0509700;Note=Hypothetical gene.;Transcript_evidence=AK059482 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-028-F06;Expression=AK059482;TENOR=Os10t0509700-01;KEGG=Os10t0509700-01
Chr10	irgsp1_rep	five_prime_UTR	19592982	19592988	.	+	.	Parent=Os10t0509700-01
Chr10	irgsp1_rep	CDS	19592989	19593213	.	+	0	Parent=Os10t0509700-01
Chr10	irgsp1_rep	three_prime_UTR	19593214	19594267	.	+	.	Parent=Os10t0509700-01
Chr10	irgsp1_rep	mRNA	19594337	19595029	.	-	.	ID=Os10t0509800-01;Name=Os10t0509800-01;Locus_id=Os10g0509800;Note=Conserved hypothetical protein.;Transcript_evidence=AK105348 (DDBJ%2C Best hit);ORF_evidence=Q94GX8 (UniProt);NIAS_FLcDNA=001-119-A02;TENOR=Os10t0509800-01
Chr10	irgsp1_rep	five_prime_UTR	19595028	19595029	.	-	.	Parent=Os10t0509800-01
Chr10	irgsp1_rep	CDS	19594337	19595027	.	-	0	Parent=Os10t0509800-01
Chr10	irgsp1_rep	mRNA	19598530	19599168	.	-	.	ID=Os10t0509900-01;Name=Os10t0509900-01;Locus_id=Os10g0509900;Note=Hypothetical protein.;Transcript_evidence=AK107924 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-134-H07;Expression=AK107924;TENOR=Os10t0509900-01;KEGG=Os10t0509900-01
Chr10	irgsp1_rep	five_prime_UTR	19599142	19599168	.	-	.	Parent=Os10t0509900-01
Chr10	irgsp1_rep	CDS	19598824	19599141	.	-	0	Parent=Os10t0509900-01
Chr10	irgsp1_rep	three_prime_UTR	19598530	19598823	.	-	.	Parent=Os10t0509900-01
Chr10	irgsp1_rep	mRNA	19606999	19610598	.	+	.	ID=Os10t0510000-01;Name=Os10t0510000-01;Locus_id=Os10g0510000;Oryzabase Gene Symbol Synonym(s)=RAc2;Oryzabase Gene Name Synonym(s)=Actin 2%2C Actin1;Note=Similar to actin.;Transcript_evidence=AK070531 (DDBJ%2C Best hit),AK101613 (DDBJ%2C Best hit);ORF_evidence=A3C6D7 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Actin-like (IPR004000),Actin%2C conserved site (IPR004001),Actin/actin-like conserved site (IPR020902);NIAS_FLcDNA=J023060P15,J033052E12;Oryzabase=14439;Expression=AK070531;TENOR=Os10t0510000-01;KEGG=Os10t0510000-01
Chr10	irgsp1_rep	five_prime_UTR	19606999	19607056	.	+	.	Parent=Os10t0510000-01
Chr10	irgsp1_rep	five_prime_UTR	19608753	19608766	.	+	.	Parent=Os10t0510000-01
Chr10	irgsp1_rep	CDS	19608767	19608826	.	+	0	Parent=Os10t0510000-01
Chr10	irgsp1_rep	CDS	19608940	19609333	.	+	0	Parent=Os10t0510000-01
Chr10	irgsp1_rep	CDS	19609602	19610215	.	+	2	Parent=Os10t0510000-01
Chr10	irgsp1_rep	CDS	19610311	19610376	.	+	0	Parent=Os10t0510000-01
Chr10	irgsp1_rep	three_prime_UTR	19610377	19610598	.	+	.	Parent=Os10t0510000-01
Chr10	irgsp1_rep	mRNA	19608763	19610390	.	-	.	ID=Os10t0510050-00;Name=Os10t0510050-00;Locus_id=Os10g0510050;Note=Hypothetical gene.;Transcript_evidence=BT018641 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0510050-00
Chr10	irgsp1_rep	five_prime_UTR	19610283	19610390	.	-	.	Parent=Os10t0510050-00
Chr10	irgsp1_rep	five_prime_UTR	19609673	19610188	.	-	.	Parent=Os10t0510050-00
Chr10	irgsp1_rep	CDS	19609596	19609672	.	-	0	Parent=Os10t0510050-00
Chr10	irgsp1_rep	CDS	19609078	19609327	.	-	1	Parent=Os10t0510050-00
Chr10	irgsp1_rep	three_prime_UTR	19608938	19609077	.	-	.	Parent=Os10t0510050-00
Chr10	irgsp1_rep	three_prime_UTR	19608763	19608824	.	-	.	Parent=Os10t0510050-00
Chr10	irgsp1_rep	mRNA	19615205	19616075	.	+	.	ID=Os10t0510200-00;Name=Os10t0510200-00;Locus_id=Os10g0510200;Note=Hypothetical conserved gene.;Transcript_evidence=AK374096 (DDBJ);ORF_evidence=Q94GX3 (UniProt);InterPro=Protein of unknown function DUF241%2C plant (IPR004320);TENOR=Os10t0510200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	19615205	19616026	.	+	0	Parent=Os10t0510200-00
Chr10	irgsp1_rep	three_prime_UTR	19616027	19616075	.	+	.	Parent=Os10t0510200-00
Chr10	irgsp1_rep	mRNA	19616370	19618622	.	-	.	ID=Os10t0510300-01;Name=Os10t0510300-01;Locus_id=Os10g0510300;Note=Peptidase C12%2C ubiquitin carboxyl-terminal hydrolase 1 domain containing protein.;Transcript_evidence=AK288012 (DDBJ%2C Best hit);ORF_evidence=NP_172132.1 (RefSeq);InterPro=Plant organelle RNA recognition domain (IPR021099);NIAS_FLcDNA=J075120I02;TENOR=Os10t0510300-01;KEGG=Os10t0510300-01
Chr10	irgsp1_rep	five_prime_UTR	19618591	19618622	.	-	.	Parent=Os10t0510300-01
Chr10	irgsp1_rep	CDS	19617463	19618590	.	-	0	Parent=Os10t0510300-01
Chr10	irgsp1_rep	three_prime_UTR	19617165	19617462	.	-	.	Parent=Os10t0510300-01
Chr10	irgsp1_rep	three_prime_UTR	19616370	19616782	.	-	.	Parent=Os10t0510300-01
Chr10	irgsp1_rep	mRNA	19621599	19626171	.	+	.	ID=Os10t0510400-01;Name=Os10t0510400-01;Locus_id=Os10g0510400;Note=Protein of unknown function DUF248%2C methyltransferase putative family protein.;Transcript_evidence=AK100601 (DDBJ%2C Best hit);ORF_evidence=NP_001148962.1 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Protein of unknown function DUF248%2C methyltransferase putative (IPR004159);NIAS_FLcDNA=J023107D05;Expression=AK100601;TENOR=Os10t0510400-01;KEGG=Os10t0510400-01
Chr10	irgsp1_rep	five_prime_UTR	19621599	19621928	.	+	.	Parent=Os10t0510400-01
Chr10	irgsp1_rep	five_prime_UTR	19622891	19622895	.	+	.	Parent=Os10t0510400-01
Chr10	irgsp1_rep	CDS	19622896	19623600	.	+	0	Parent=Os10t0510400-01
Chr10	irgsp1_rep	CDS	19623688	19623898	.	+	0	Parent=Os10t0510400-01
Chr10	irgsp1_rep	CDS	19624016	19624313	.	+	2	Parent=Os10t0510400-01
Chr10	irgsp1_rep	CDS	19624404	19624868	.	+	1	Parent=Os10t0510400-01
Chr10	irgsp1_rep	CDS	19625465	19625690	.	+	1	Parent=Os10t0510400-01
Chr10	irgsp1_rep	three_prime_UTR	19625691	19626171	.	+	.	Parent=Os10t0510400-01
Chr10	irgsp1_rep	mRNA	19621697	19626084	.	+	.	ID=Os10t0510400-02;Name=Os10t0510400-02;Locus_id=Os10g0510400;Note=Protein of unknown function DUF248%2C methyltransferase putative family protein.;Transcript_evidence=AK073237 (DDBJ%2C Best hit);ORF_evidence=NP_001148962.1 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Protein of unknown function DUF248%2C methyltransferase putative (IPR004159);NIAS_FLcDNA=J033005B11;Expression=AK073237;TENOR=Os10t0510400-02;KEGG=Os10t0510400-02
Chr10	irgsp1_rep	five_prime_UTR	19621697	19621928	.	+	.	Parent=Os10t0510400-02
Chr10	irgsp1_rep	five_prime_UTR	19622891	19622895	.	+	.	Parent=Os10t0510400-02
Chr10	irgsp1_rep	CDS	19622896	19623600	.	+	0	Parent=Os10t0510400-02
Chr10	irgsp1_rep	CDS	19623688	19623898	.	+	0	Parent=Os10t0510400-02
Chr10	irgsp1_rep	CDS	19624016	19624313	.	+	2	Parent=Os10t0510400-02
Chr10	irgsp1_rep	CDS	19624404	19624868	.	+	1	Parent=Os10t0510400-02
Chr10	irgsp1_rep	CDS	19625465	19625690	.	+	1	Parent=Os10t0510400-02
Chr10	irgsp1_rep	three_prime_UTR	19625691	19626084	.	+	.	Parent=Os10t0510400-02
Chr10	irgsp1_rep	mRNA	19631259	19632262	.	-	.	ID=Os10t0510500-01;Name=Os10t0510500-01;Locus_id=Os10g0510500;CGSNL Gene Symbol=SAUR56;CGSNL Gene Name=SMALL AUXIN-UP RNA 56;Oryzabase Gene Symbol Synonym(s)=OsSAUR56;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 56;Note=Auxin responsive SAUR protein family protein.;Transcript_evidence=AK068270 (DDBJ%2C Best hit),AK109491 (DDBJ%2C Best hit);ORF_evidence=B6TBH1 (UniProt);InterPro=Auxin responsive SAUR protein (IPR003676);NIAS_FLcDNA=J013149I12,001-204-H09;Oryzabase=9181;Expression=AK068270;TENOR=Os10t0510500-01;KEGG=Os10t0510500-01
Chr10	irgsp1_rep	five_prime_UTR	19632004	19632262	.	-	.	Parent=Os10t0510500-01
Chr10	irgsp1_rep	CDS	19631626	19632003	.	-	0	Parent=Os10t0510500-01
Chr10	irgsp1_rep	three_prime_UTR	19631259	19631625	.	-	.	Parent=Os10t0510500-01
Chr10	irgsp1_rep	mRNA	19640816	19646242	.	-	.	ID=Os10t0510700-00;Name=Os10t0510700-00;Locus_id=Os10g0510700;Note=Similar to calcium dependent protein kinase1.;Transcript_evidence=AK376289 (DDBJ);ORF_evidence=NP_001105740.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),EF-hand-like domain (IPR011992),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os10t0510700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	19645301	19646242	.	-	0	Parent=Os10t0510700-00
Chr10	irgsp1_rep	CDS	19643894	19644024	.	-	0	Parent=Os10t0510700-00
Chr10	irgsp1_rep	CDS	19643151	19643192	.	-	1	Parent=Os10t0510700-00
Chr10	irgsp1_rep	CDS	19642962	19643070	.	-	1	Parent=Os10t0510700-00
Chr10	irgsp1_rep	CDS	19642783	19642861	.	-	0	Parent=Os10t0510700-00
Chr10	irgsp1_rep	CDS	19642301	19642597	.	-	2	Parent=Os10t0510700-00
Chr10	irgsp1_rep	CDS	19642077	19642186	.	-	2	Parent=Os10t0510700-00
Chr10	irgsp1_rep	CDS	19641665	19641775	.	-	0	Parent=Os10t0510700-00
Chr10	irgsp1_rep	CDS	19641462	19641524	.	-	0	Parent=Os10t0510700-00
Chr10	irgsp1_rep	CDS	19641200	19641367	.	-	0	Parent=Os10t0510700-00
Chr10	irgsp1_rep	CDS	19640976	19641116	.	-	0	Parent=Os10t0510700-00
Chr10	irgsp1_rep	three_prime_UTR	19640816	19640975	.	-	.	Parent=Os10t0510700-00
Chr10	irgsp1_rep	mRNA	19671515	19672728	.	+	.	ID=Os10t0511200-00;Name=Os10t0511200-00;Locus_id=Os10g0511200;Note=Similar to CytoChrome P450 family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q337C6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);TENOR=Os10t0511200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	19671515	19671589	.	+	0	Parent=Os10t0511200-00
Chr10	irgsp1_rep	CDS	19671925	19672728	.	+	0	Parent=Os10t0511200-00
Chr10	irgsp1_rep	mRNA	19676047	19676325	.	-	.	ID=Os10t0511300-00;Name=Os10t0511300-00;Locus_id=Os10g0511300;Note=Similar to mTERF domain-containing protein%2C mitochondrial.;Transcript_evidence=ab initio prediction;ORF_evidence=E1UHI8 (UniProt);TENOR=Os10t0511300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	19676047	19676325	.	-	0	Parent=Os10t0511300-00
Chr10	irgsp1_rep	mRNA	19677199	19682446	.	+	.	ID=Os10t0511400-01;Name=Os10t0511400-01;Locus_id=Os10g0511400;Oryzabase Gene Symbol Synonym(s)=OsProCP3%2C PROCP3;Oryzabase Gene Name Synonym(s)=Lysosomal Pro-x Carboxypeptidase 3%2C LYSOSOMAL PRO-X CARBOXYPEPTIDASE 3;Note=Peptidase S28 family protein.;Transcript_evidence=AK070496 (DDBJ%2C Best hit);ORF_evidence=Q9FW17 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type peptidase activity (GO:0008236);InterPro=Peptidase S28 (IPR008758);NIAS_FLcDNA=J023054G22;Oryzabase=20051;Expression=AK070496;TENOR=Os10t0511400-01;KEGG=Os10t0511400-01
Chr10	irgsp1_rep	five_prime_UTR	19677199	19677318	.	+	.	Parent=Os10t0511400-01
Chr10	irgsp1_rep	CDS	19677319	19677519	.	+	0	Parent=Os10t0511400-01
Chr10	irgsp1_rep	CDS	19678251	19678376	.	+	0	Parent=Os10t0511400-01
Chr10	irgsp1_rep	CDS	19678540	19678695	.	+	0	Parent=Os10t0511400-01
Chr10	irgsp1_rep	CDS	19678775	19678957	.	+	0	Parent=Os10t0511400-01
Chr10	irgsp1_rep	CDS	19679056	19679172	.	+	0	Parent=Os10t0511400-01
Chr10	irgsp1_rep	CDS	19679680	19679733	.	+	0	Parent=Os10t0511400-01
Chr10	irgsp1_rep	CDS	19679813	19679884	.	+	0	Parent=Os10t0511400-01
Chr10	irgsp1_rep	CDS	19680099	19680210	.	+	0	Parent=Os10t0511400-01
Chr10	irgsp1_rep	CDS	19680340	19680436	.	+	2	Parent=Os10t0511400-01
Chr10	irgsp1_rep	CDS	19680586	19680680	.	+	1	Parent=Os10t0511400-01
Chr10	irgsp1_rep	CDS	19681245	19681319	.	+	2	Parent=Os10t0511400-01
Chr10	irgsp1_rep	CDS	19681459	19681542	.	+	2	Parent=Os10t0511400-01
Chr10	irgsp1_rep	CDS	19681754	19681852	.	+	2	Parent=Os10t0511400-01
Chr10	irgsp1_rep	CDS	19682053	19682105	.	+	2	Parent=Os10t0511400-01
Chr10	irgsp1_rep	three_prime_UTR	19682106	19682446	.	+	.	Parent=Os10t0511400-01
Chr10	irgsp1_rep	mRNA	19687251	19692164	.	+	.	ID=Os10t0511600-01;Name=Os10t0511600-01;Locus_id=Os10g0511600;Oryzabase Gene Symbol Synonym(s)=OsProCP4%2C PROCP4;Oryzabase Gene Name Synonym(s)=Lysosomal Pro-x Carboxypeptidase 4%2C LYSOSOMAL PRO-X CARBOXYPEPTIDASE 4;Note=Similar to prolyl carboxypeptidase like protein.;Transcript_evidence=AK073197 (DDBJ%2C Best hit);ORF_evidence=NP_001149727.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type peptidase activity (GO:0008236);InterPro=Peptidase S28 (IPR008758);NIAS_FLcDNA=J033022B10;Oryzabase=20052;TENOR=Os10t0511600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	19687251	19687315	.	+	.	Parent=Os10t0511600-01
Chr10	irgsp1_rep	CDS	19687316	19687510	.	+	0	Parent=Os10t0511600-01
Chr10	irgsp1_rep	CDS	19687746	19687868	.	+	0	Parent=Os10t0511600-01
Chr10	irgsp1_rep	CDS	19687943	19688098	.	+	0	Parent=Os10t0511600-01
Chr10	irgsp1_rep	CDS	19688281	19688466	.	+	0	Parent=Os10t0511600-01
Chr10	irgsp1_rep	CDS	19688619	19688735	.	+	0	Parent=Os10t0511600-01
Chr10	irgsp1_rep	CDS	19688873	19688926	.	+	0	Parent=Os10t0511600-01
Chr10	irgsp1_rep	CDS	19689006	19689077	.	+	0	Parent=Os10t0511600-01
Chr10	irgsp1_rep	CDS	19689582	19689687	.	+	0	Parent=Os10t0511600-01
Chr10	irgsp1_rep	CDS	19689810	19689906	.	+	2	Parent=Os10t0511600-01
Chr10	irgsp1_rep	CDS	19690242	19690350	.	+	1	Parent=Os10t0511600-01
Chr10	irgsp1_rep	three_prime_UTR	19690351	19690705	.	+	.	Parent=Os10t0511600-01
Chr10	irgsp1_rep	three_prime_UTR	19690836	19690919	.	+	.	Parent=Os10t0511600-01
Chr10	irgsp1_rep	three_prime_UTR	19691470	19691572	.	+	.	Parent=Os10t0511600-01
Chr10	irgsp1_rep	three_prime_UTR	19691916	19692164	.	+	.	Parent=Os10t0511600-01
Chr10	irgsp1_rep	mRNA	19706488	19707138	.	+	.	ID=Os10t0511800-00;Name=Os10t0511800-00;Locus_id=Os10g0511800;Note=Similar to Plus-3 domain containing protein%2C expressed.;Transcript_evidence=EU942983 (DDBJ);ORF_evidence=Q7XCX5 (UniProt);GO=Biological Process: transcription initiation%2C DNA-dependent (GO:0006352),Biological Process: histone modification (GO:0016570),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SWIB/MDM2 domain (IPR003121),Plus-3 (IPR004343),Plus-3 domain%2C subgroup (IPR018144);TENOR=Os10t0511800-00
Chr10	irgsp1_rep	CDS	19706488	19707138	.	+	0	Parent=Os10t0511800-00
Chr10	irgsp1_rep	mRNA	19711698	19713504	.	+	.	ID=Os10t0511900-01;Name=Os10t0511900-01;Locus_id=Os10g0511900;Note=Similar to Plus-3 domain containing protein%2C expressed.;Transcript_evidence=AK060521 (DDBJ%2C Best hit);ORF_evidence=Q7XCX5 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=001-020-C06;TENOR=Os10t0511900-01;B5toI1=Exon-intron structures and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	19711698	19711698	.	+	.	Parent=Os10t0511900-01
Chr10	irgsp1_rep	CDS	19711699	19711885	.	+	0	Parent=Os10t0511900-01
Chr10	irgsp1_rep	CDS	19711959	19712113	.	+	2	Parent=Os10t0511900-01
Chr10	irgsp1_rep	CDS	19712230	19713258	.	+	0	Parent=Os10t0511900-01
Chr10	irgsp1_rep	three_prime_UTR	19713259	19713504	.	+	.	Parent=Os10t0511900-01
Chr10	irgsp1_rep	mRNA	19715337	19718777	.	+	.	ID=Os10t0512001-01;Name=Os10t0512001-01;Locus_id=Os10g0512001;Note=Hypothetical gene.;Transcript_evidence=AK242263 (DDBJ%2C Best hit);ORF_evidence=NP_001176238.1 (RefSeq);NIAS_FLcDNA=J075185I02;TENOR=Os10t0512001-01;KEGG=Os10t0512001-01
Chr10	irgsp1_rep	five_prime_UTR	19715337	19715485	.	+	.	Parent=Os10t0512001-01
Chr10	irgsp1_rep	five_prime_UTR	19715844	19716000	.	+	.	Parent=Os10t0512001-01
Chr10	irgsp1_rep	five_prime_UTR	19716094	19716157	.	+	.	Parent=Os10t0512001-01
Chr10	irgsp1_rep	CDS	19716158	19716346	.	+	0	Parent=Os10t0512001-01
Chr10	irgsp1_rep	CDS	19718398	19718457	.	+	0	Parent=Os10t0512001-01
Chr10	irgsp1_rep	three_prime_UTR	19718458	19718777	.	+	.	Parent=Os10t0512001-01
Chr10	irgsp1_rep	mRNA	19715858	19720121	.	-	.	ID=Os10t0512100-00;Name=Os10t0512100-00;Locus_id=Os10g0512100;Note=Protein of unknown function DUF726 family protein.;Transcript_evidence=BT033755 (DDBJ);ORF_evidence=NP_001176237.1 (RefSeq);InterPro=Protein of unknown function DUF726 (IPR007941);TENOR=Os10t0512100-00;KEGG=Os10t0512100-00
Chr10	irgsp1_rep	five_prime_UTR	19720116	19720121	.	-	.	Parent=Os10t0512100-00
Chr10	irgsp1_rep	CDS	19719892	19720115	.	-	0	Parent=Os10t0512100-00
Chr10	irgsp1_rep	CDS	19719745	19719826	.	-	1	Parent=Os10t0512100-00
Chr10	irgsp1_rep	CDS	19719265	19719663	.	-	0	Parent=Os10t0512100-00
Chr10	irgsp1_rep	CDS	19718407	19718572	.	-	0	Parent=Os10t0512100-00
Chr10	irgsp1_rep	CDS	19718165	19718317	.	-	2	Parent=Os10t0512100-00
Chr10	irgsp1_rep	CDS	19717938	19718035	.	-	2	Parent=Os10t0512100-00
Chr10	irgsp1_rep	CDS	19717713	19717804	.	-	0	Parent=Os10t0512100-00
Chr10	irgsp1_rep	CDS	19717400	19717470	.	-	1	Parent=Os10t0512100-00
Chr10	irgsp1_rep	CDS	19717160	19717295	.	-	2	Parent=Os10t0512100-00
Chr10	irgsp1_rep	CDS	19716812	19716871	.	-	1	Parent=Os10t0512100-00
Chr10	irgsp1_rep	CDS	19716653	19716735	.	-	1	Parent=Os10t0512100-00
Chr10	irgsp1_rep	CDS	19716505	19716581	.	-	2	Parent=Os10t0512100-00
Chr10	irgsp1_rep	CDS	19716225	19716295	.	-	0	Parent=Os10t0512100-00
Chr10	irgsp1_rep	CDS	19716080	19716137	.	-	1	Parent=Os10t0512100-00
Chr10	irgsp1_rep	CDS	19715858	19715998	.	-	0	Parent=Os10t0512100-00
Chr10	irgsp1_rep	mRNA	19728265	19735008	.	-	.	ID=Os10t0512400-01;Name=Os10t0512400-01;Locus_id=Os10g0512400;RAP-DB Gene Symbol Synonym(s)=CYP84A5%2C F5H1%2C OsCAld5H1;RAP-DB Gene Name Synonym(s)=coniferaldehyde 5-hydroxylase 1%2C ferulate 5-hydroxylase 1;Oryzabase Gene Symbol Synonym(s)=OsF5H1%2C F5H1%2C OsCAld5H1%2C CAld5H1%2C CYP84A5%2C OsCYP84A5;Oryzabase Gene Name Synonym(s)=ferulate 5-hydroxylase 1%2C Coniferaldehyde 5-hydroxylase 1;Note=Coniferaldehyde 5-hydroxylase%2C Lignin biosynthesis;Transcript_evidence=AK067847;ORF_evidence=Q109F2;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J013124D03;Manual Curation=April 21%2C 2017;Literature_PMID=28421330;Oryzabase=16716;Expression=AK067847;TENOR=Os10t0512400-01;KEGG=Os10t0512400-01 (EC:1.14.-.-)
Chr10	irgsp1_rep	five_prime_UTR	19734886	19735008	.	-	.	Parent=Os10t0512400-01
Chr10	irgsp1_rep	CDS	19733929	19734885	.	-	0	Parent=Os10t0512400-01
Chr10	irgsp1_rep	CDS	19728637	19729272	.	-	0	Parent=Os10t0512400-01
Chr10	irgsp1_rep	three_prime_UTR	19728265	19728636	.	-	.	Parent=Os10t0512400-01
Chr10	irgsp1_rep	mRNA	19728656	19729275	.	+	.	ID=Os10t0512450-00;Name=Os10t0512450-00;Locus_id=Os10g0512450;Note=Hypothetical protein.;Transcript_evidence=EU942896 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0512450-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	19728656	19728657	.	+	.	Parent=Os10t0512450-00
Chr10	irgsp1_rep	CDS	19728658	19729275	.	+	0	Parent=Os10t0512450-00
Chr10	irgsp1_rep	mRNA	19747230	19749625	.	-	.	ID=Os10t0512500-01;Name=Os10t0512500-01;Locus_id=Os10g0512500;Note=RNA-binding%2C CRM domain domain containing protein.;Transcript_evidence=AK105879 (DDBJ%2C Best hit);ORF_evidence=B6T8H1 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=RNA-binding%2C CRM domain (IPR001890);NIAS_FLcDNA=001-204-C10;Oryzabase=23509;Expression=AK105879;TENOR=Os10t0512500-01;KEGG=Os10t0512500-01
Chr10	irgsp1_rep	five_prime_UTR	19749558	19749625	.	-	.	Parent=Os10t0512500-01
Chr10	irgsp1_rep	CDS	19749108	19749557	.	-	0	Parent=Os10t0512500-01
Chr10	irgsp1_rep	CDS	19747415	19747723	.	-	0	Parent=Os10t0512500-01
Chr10	irgsp1_rep	three_prime_UTR	19747230	19747414	.	-	.	Parent=Os10t0512500-01
Chr10	irgsp1_rep	mRNA	19747304	19749610	.	-	.	ID=Os10t0512500-02;Name=Os10t0512500-02;Locus_id=Os10g0512500;Note=Similar to Crs1/yhby domain containing protein (Fragment).;Transcript_evidence=AK067203 (DDBJ%2C Best hit);ORF_evidence=A6N061 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=RNA-binding%2C CRM domain (IPR001890);NIAS_FLcDNA=J013095N21;Oryzabase=23509;Expression=AK067203;TENOR=Os10t0512500-02;KEGG=Os10t0512500-02
Chr10	irgsp1_rep	five_prime_UTR	19747727	19749610	.	-	.	Parent=Os10t0512500-02
Chr10	irgsp1_rep	CDS	19747415	19747726	.	-	0	Parent=Os10t0512500-02
Chr10	irgsp1_rep	three_prime_UTR	19747304	19747414	.	-	.	Parent=Os10t0512500-02
Chr10	irgsp1_rep	mRNA	19751630	19755139	.	-	.	ID=Os10t0512700-01;Name=Os10t0512700-01;Locus_id=Os10g0512700;Note=Similar to SH3 domain-containing protein 3.;Transcript_evidence=AK067223 (DDBJ%2C Best hit);ORF_evidence=B6STF7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Src homology-3 domain (IPR001452),Variant SH3 (IPR011511);NIAS_FLcDNA=J013097A14;Expression=AK067223;TENOR=Os10t0512700-01;KEGG=Os10t0512700-01
Chr10	irgsp1_rep	five_prime_UTR	19754887	19755139	.	-	.	Parent=Os10t0512700-01
Chr10	irgsp1_rep	CDS	19754827	19754886	.	-	0	Parent=Os10t0512700-01
Chr10	irgsp1_rep	CDS	19754569	19754685	.	-	0	Parent=Os10t0512700-01
Chr10	irgsp1_rep	CDS	19754366	19754435	.	-	0	Parent=Os10t0512700-01
Chr10	irgsp1_rep	CDS	19754113	19754264	.	-	2	Parent=Os10t0512700-01
Chr10	irgsp1_rep	CDS	19753138	19753239	.	-	0	Parent=Os10t0512700-01
Chr10	irgsp1_rep	CDS	19752724	19752924	.	-	0	Parent=Os10t0512700-01
Chr10	irgsp1_rep	CDS	19752565	19752627	.	-	0	Parent=Os10t0512700-01
Chr10	irgsp1_rep	CDS	19752285	19752440	.	-	0	Parent=Os10t0512700-01
Chr10	irgsp1_rep	CDS	19752089	19752163	.	-	0	Parent=Os10t0512700-01
Chr10	irgsp1_rep	CDS	19751859	19751975	.	-	0	Parent=Os10t0512700-01
Chr10	irgsp1_rep	three_prime_UTR	19751630	19751858	.	-	.	Parent=Os10t0512700-01
Chr10	irgsp1_rep	mRNA	19756786	19768053	.	-	.	ID=Os10t0512800-01;Name=Os10t0512800-01;Locus_id=Os10g0512800;Oryzabase Gene Symbol Synonym(s)=OsRFPHC-10%2C SIP13;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPHC-10%2C RING-HC protein 10%2C SKIP interacting protein 13%2C SKIPa-interacting protein 13%2C SKIPa-interacting protein 13;Note=Similar to predicted protein.;Transcript_evidence=AK242756 (DDBJ%2C Best hit);ORF_evidence=NP_195616.2 (RefSeq);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: zinc ion binding (GO:0008270);InterPro=Kinesin%2C motor domain (IPR001752),Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Kinesin%2C motor region%2C conserved site (IPR019821);NIAS_FLcDNA=J090051D19;Oryzabase=11793;TENOR=Os10t0512800-01;KEGG=Os10t0512800-01
Chr10	irgsp1_rep	five_prime_UTR	19767875	19768053	.	-	.	Parent=Os10t0512800-01
Chr10	irgsp1_rep	CDS	19767501	19767874	.	-	0	Parent=Os10t0512800-01
Chr10	irgsp1_rep	CDS	19767305	19767402	.	-	1	Parent=Os10t0512800-01
Chr10	irgsp1_rep	CDS	19766514	19766603	.	-	2	Parent=Os10t0512800-01
Chr10	irgsp1_rep	CDS	19766091	19766143	.	-	2	Parent=Os10t0512800-01
Chr10	irgsp1_rep	CDS	19765688	19765753	.	-	0	Parent=Os10t0512800-01
Chr10	irgsp1_rep	CDS	19764715	19764768	.	-	0	Parent=Os10t0512800-01
Chr10	irgsp1_rep	CDS	19764174	19764233	.	-	0	Parent=Os10t0512800-01
Chr10	irgsp1_rep	CDS	19763452	19763530	.	-	0	Parent=Os10t0512800-01
Chr10	irgsp1_rep	CDS	19762770	19762837	.	-	2	Parent=Os10t0512800-01
Chr10	irgsp1_rep	CDS	19762560	19762616	.	-	0	Parent=Os10t0512800-01
Chr10	irgsp1_rep	CDS	19762370	19762474	.	-	0	Parent=Os10t0512800-01
Chr10	irgsp1_rep	CDS	19761932	19762036	.	-	0	Parent=Os10t0512800-01
Chr10	irgsp1_rep	CDS	19761689	19761796	.	-	0	Parent=Os10t0512800-01
Chr10	irgsp1_rep	CDS	19761467	19761598	.	-	0	Parent=Os10t0512800-01
Chr10	irgsp1_rep	CDS	19761134	19761313	.	-	0	Parent=Os10t0512800-01
Chr10	irgsp1_rep	CDS	19760854	19761018	.	-	0	Parent=Os10t0512800-01
Chr10	irgsp1_rep	CDS	19760274	19760414	.	-	0	Parent=Os10t0512800-01
Chr10	irgsp1_rep	CDS	19759168	19759287	.	-	0	Parent=Os10t0512800-01
Chr10	irgsp1_rep	CDS	19758981	19759031	.	-	0	Parent=Os10t0512800-01
Chr10	irgsp1_rep	CDS	19758829	19758876	.	-	0	Parent=Os10t0512800-01
Chr10	irgsp1_rep	CDS	19758576	19758707	.	-	0	Parent=Os10t0512800-01
Chr10	irgsp1_rep	CDS	19757790	19758470	.	-	0	Parent=Os10t0512800-01
Chr10	irgsp1_rep	CDS	19757534	19757663	.	-	0	Parent=Os10t0512800-01
Chr10	irgsp1_rep	CDS	19757203	19757285	.	-	2	Parent=Os10t0512800-01
Chr10	irgsp1_rep	three_prime_UTR	19757183	19757202	.	-	.	Parent=Os10t0512800-01
Chr10	irgsp1_rep	three_prime_UTR	19756786	19757087	.	-	.	Parent=Os10t0512800-01
Chr10	irgsp1_rep	mRNA	19778055	19785158	.	-	.	ID=Os10t0513200-01;Name=Os10t0513200-01;Locus_id=Os10g0513200;RAP-DB Gene Symbol Synonym(s)=NIP3%3B1%2C OsNIP3%3B1%2C NIP3-1;RAP-DB Gene Name Synonym(s)=NOD26 LIKE INTRINSIC PROTEIN 3%3B1%2C Aquaporin NIP3-1 %3B NOD26-like intrinsic protein 3-1;CGSNL Gene Symbol=NIP3%3B1;CGSNL Gene Name=NOD26 LIKE INTRINSIC PROTEIN 3%3B1;Oryzabase Gene Symbol Synonym(s)=OsNIP3%3B1%2C NIP3-1%2C OsNIP3.1%2C NIP3.1;Oryzabase Gene Name Synonym(s)=Aquaporin NIP3-1%2C NOD26-like intrinsic protein 3-1%2C nodulin 26-like intrinsic protein 3-1;Note=Boric acid channel%2C Regulation of boron distribution;Transcript_evidence=Inferred from literature;ORF_evidence=Q0IWF3;GO=Biological Process: transport (GO:0006810),Molecular Function: transporter activity (GO:0005215),Cellular Component: membrane (GO:0016020);InterPro=Major intrinsic protein (IPR000425),Aquaporin-like (IPR023271),Major intrinsic protein%2C conserved site (IPR022357);Manual Curation=January 15%2C 2015;Literature_PMID=24654769;Oryzabase=8523;TENOR=Os10t0513200-00
Chr10	irgsp1_rep	five_prime_UTR	19784300	19785158	.	-	.	Parent=Os10t0513200-01
Chr10	irgsp1_rep	CDS	19784048	19784299	.	-	0	Parent=Os10t0513200-01
Chr10	irgsp1_rep	CDS	19779401	19779888	.	-	0	Parent=Os10t0513200-01
Chr10	irgsp1_rep	CDS	19778555	19778750	.	-	1	Parent=Os10t0513200-01
Chr10	irgsp1_rep	three_prime_UTR	19778055	19778554	.	-	.	Parent=Os10t0513200-01
Chr10	irgsp1_rep	mRNA	19801017	19803677	.	+	.	ID=Os10t0513300-01;Name=Os10t0513300-01;Locus_id=Os10g0513300;Note=Similar to UPF0496 protein 4.;Transcript_evidence=AK102890 (DDBJ%2C Best hit);ORF_evidence=A2Z9A6 (UniProt);InterPro=Protein BYPASS-related (IPR008511);NIAS_FLcDNA=J033112M21;Oryzabase=20221;Expression=AK102890;TENOR=Os10t0513300-01;KEGG=Os10t0513300-01
Chr10	irgsp1_rep	five_prime_UTR	19801017	19801317	.	+	.	Parent=Os10t0513300-01
Chr10	irgsp1_rep	five_prime_UTR	19801894	19801903	.	+	.	Parent=Os10t0513300-01
Chr10	irgsp1_rep	CDS	19801904	19803274	.	+	0	Parent=Os10t0513300-01
Chr10	irgsp1_rep	three_prime_UTR	19803275	19803677	.	+	.	Parent=Os10t0513300-01
Chr10	irgsp1_rep	mRNA	19803162	19803765	.	+	.	ID=Os10t0513300-02;Name=Os10t0513300-02;Locus_id=Os10g0513300;Note=Similar to cDNA clone:J033112M21%2C full insert sequence.;Transcript_evidence=AK063863 (DDBJ%2C Best hit);ORF_evidence=B7ETR9 (UniProt);NIAS_FLcDNA=001-122-E01;Oryzabase=20221;Expression=AK063863;TENOR=Os10t0513300-02;KEGG=Os10t0513300-02
Chr10	irgsp1_rep	five_prime_UTR	19803162	19803163	.	+	.	Parent=Os10t0513300-02
Chr10	irgsp1_rep	CDS	19803164	19803274	.	+	0	Parent=Os10t0513300-02
Chr10	irgsp1_rep	three_prime_UTR	19803275	19803765	.	+	.	Parent=Os10t0513300-02
Chr10	irgsp1_rep	mRNA	19804480	19806116	.	+	.	ID=Os10t0513400-00;Name=Os10t0513400-00;Locus_id=Os10g0513400;Note=CytoChrome P450 family protein.;Transcript_evidence=AK376041 (DDBJ);ORF_evidence=NP_001147503.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972),EF-Hand 1%2C calcium-binding site (IPR018247);TENOR=Os10t0513400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	19804480	19806081	.	+	0	Parent=Os10t0513400-00
Chr10	irgsp1_rep	three_prime_UTR	19806082	19806116	.	+	.	Parent=Os10t0513400-00
Chr10	irgsp1_rep	mRNA	19810238	19812025	.	+	.	ID=Os10t0513900-01;Name=Os10t0513900-01;Locus_id=Os10g0513900;Oryzabase Gene Symbol Synonym(s)=CYP450;Oryzabase Gene Name Synonym(s)=cytoChrome P450;Note=CytoChrome P450 family protein.;Transcript_evidence=AK105773 (DDBJ%2C Best hit),AK121651 (DDBJ%2C Best hit);ORF_evidence=NP_001147503.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=001-202-F01,J033061A12;Oryzabase=22576;TENOR=Os10t0513900-01
Chr10	irgsp1_rep	five_prime_UTR	19810238	19810259	.	+	.	Parent=Os10t0513900-01
Chr10	irgsp1_rep	CDS	19810260	19811822	.	+	0	Parent=Os10t0513900-01
Chr10	irgsp1_rep	three_prime_UTR	19811823	19812025	.	+	.	Parent=Os10t0513900-01
Chr10	irgsp1_rep	mRNA	19826752	19828392	.	+	.	ID=Os10t0514300-00;Name=Os10t0514300-00;Locus_id=Os10g0514300;Note=Similar to Transposon protein.;Transcript_evidence=AK359962 (DDBJ);ORF_evidence=B6UDW1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);TENOR=Os10t0514300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	19826752	19826810	.	+	.	Parent=Os10t0514300-00
Chr10	irgsp1_rep	CDS	19826811	19827836	.	+	0	Parent=Os10t0514300-00
Chr10	irgsp1_rep	three_prime_UTR	19827837	19828392	.	+	.	Parent=Os10t0514300-00
Chr10	irgsp1_rep	mRNA	19828898	19830037	.	+	.	ID=Os10t0514400-01;Name=Os10t0514400-01;Locus_id=Os10g0514400;Note=Similar to CytoChrome P450 family protein.;Transcript_evidence=AK060321 (DDBJ%2C Best hit);ORF_evidence=Q109E7 (UniProt);NIAS_FLcDNA=001-007-F08;TENOR=Os10t0514400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	19828898	19829204	.	+	.	Parent=Os10t0514400-01
Chr10	irgsp1_rep	CDS	19829205	19829498	.	+	0	Parent=Os10t0514400-01
Chr10	irgsp1_rep	three_prime_UTR	19829499	19830037	.	+	.	Parent=Os10t0514400-01
Chr10	irgsp1_rep	mRNA	19831923	19832670	.	-	.	ID=Os10t0514425-00;Name=Os10t0514425-00;Locus_id=Os10g0514425;Note=Hypothetical protein.;Transcript_evidence=AK357549 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0514425-00
Chr10	irgsp1_rep	five_prime_UTR	19832561	19832670	.	-	.	Parent=Os10t0514425-00
Chr10	irgsp1_rep	CDS	19832153	19832560	.	-	0	Parent=Os10t0514425-00
Chr10	irgsp1_rep	three_prime_UTR	19831923	19832152	.	-	.	Parent=Os10t0514425-00
Chr10	irgsp1_rep	mRNA	19831925	19832723	.	+	.	ID=Os10t0514450-00;Name=Os10t0514450-00;Locus_id=Os10g0514450;Note=Similar to CytoChrome P450 family protein.;Transcript_evidence=AK363123 (DDBJ);ORF_evidence=Q109E7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os10t0514450-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	19831925	19832000	.	+	.	Parent=Os10t0514450-00
Chr10	irgsp1_rep	CDS	19832001	19832723	.	+	0	Parent=Os10t0514450-00
Chr10	irgsp1_rep	mRNA	19837750	19839400	.	+	.	ID=Os10t0514500-00;Name=Os10t0514500-00;Locus_id=Os10g0514500;Note=Similar to transposon protein.;Transcript_evidence=AK362604 (DDBJ);ORF_evidence=NP_001147503.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os10t0514500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	19837750	19838427	.	+	0	Parent=Os10t0514500-00
Chr10	irgsp1_rep	CDS	19838501	19839400	.	+	0	Parent=Os10t0514500-00
Chr10	irgsp1_rep	mRNA	19837874	19839387	.	-	.	ID=Os10t0514550-00;Name=Os10t0514550-00;Locus_id=Os10g0514550;Note=Hypothetical protein.;Transcript_evidence=AK357549 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0514550-00
Chr10	irgsp1_rep	five_prime_UTR	19839355	19839387	.	-	.	Parent=Os10t0514550-00
Chr10	irgsp1_rep	CDS	19838488	19839354	.	-	0	Parent=Os10t0514550-00
Chr10	irgsp1_rep	three_prime_UTR	19837874	19838487	.	-	.	Parent=Os10t0514550-00
Chr10	irgsp1_rep	mRNA	19840596	19842443	.	-	.	ID=Os10t0514600-01;Name=Os10t0514600-01;Locus_id=Os10g0514600;Note=Similar to Clone ZZD584 mRNA sequence.;Transcript_evidence=AK070291 (DDBJ%2C Best hit);ORF_evidence=C5X0Z6 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: cellular protein metabolic process (GO:0044267),Molecular Function: ATP binding (GO:0005524),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Chaperonin TCP-1%2C conserved site (IPR002194),Chaperonin Cpn60/TCP-1 (IPR002423),T-complex protein 1%2C delta subunit (IPR012717),Chaperone%2C tailless complex polypeptide 1 (IPR017998);NIAS_FLcDNA=J023052I10;Expression=AK070291;TENOR=Os10t0514600-01;KEGG=Os10t0514600-01
Chr10	irgsp1_rep	five_prime_UTR	19842391	19842443	.	-	.	Parent=Os10t0514600-01
Chr10	irgsp1_rep	CDS	19840765	19842390	.	-	0	Parent=Os10t0514600-01
Chr10	irgsp1_rep	three_prime_UTR	19840596	19840764	.	-	.	Parent=Os10t0514600-01
Chr10	irgsp1_rep	mRNA	19847084	19848778	.	+	.	ID=Os10t0514700-00;Name=Os10t0514700-00;Locus_id=Os10g0514700;Note=Similar to CytoChrome P450 family protein.;Transcript_evidence=BT085702 (DDBJ);ORF_evidence=Q7XCU9 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os10t0514700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	19847084	19847509	.	+	.	Parent=Os10t0514700-00
Chr10	irgsp1_rep	CDS	19847510	19848778	.	+	0	Parent=Os10t0514700-00
Chr10	irgsp1_rep	mRNA	19856513	19858161	.	-	.	ID=Os10t0514901-00;Name=Os10t0514901-00;Locus_id=Os10g0514901;CGSNL Gene Symbol=CYP89B4;CGSNL Gene Name=CYTOCHROME P450 89B4;Oryzabase Gene Symbol Synonym(s)=OsCYP89B4;Oryzabase Gene Name Synonym(s)=CytoChrome P450 89B4;Note=Similar to CytoChrome P450 family protein.;Transcript_evidence=AK363123 (DDBJ);ORF_evidence=Q7XCU9 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);Oryzabase=21838;TENOR=Os10t0514901-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	19856623	19858161	.	-	0	Parent=Os10t0514901-00
Chr10	irgsp1_rep	three_prime_UTR	19856513	19856622	.	-	.	Parent=Os10t0514901-00
Chr10	irgsp1_rep	mRNA	19858613	19860310	.	-	.	ID=Os10t0515100-01;Name=Os10t0515100-01;Locus_id=Os10g0515100;Note=Hypothetical protein.;Transcript_evidence=AK119487 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-134-C08;Expression=AK119487;TENOR=Os10t0515100-01;KEGG=Os10t0515100-01
Chr10	irgsp1_rep	five_prime_UTR	19859961	19860310	.	-	.	Parent=Os10t0515100-01
Chr10	irgsp1_rep	CDS	19859442	19859960	.	-	0	Parent=Os10t0515100-01
Chr10	irgsp1_rep	three_prime_UTR	19858613	19859441	.	-	.	Parent=Os10t0515100-01
Chr10	irgsp1_rep	mRNA	19858762	19860660	.	+	.	ID=Os10t0515200-01;Name=Os10t0515200-01;Locus_id=Os10g0515200;Note=CytoChrome P450 family protein.;Transcript_evidence=AK105678 (DDBJ%2C Best hit);ORF_evidence=B6UDW1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=001-201-B02;Expression=AK105678;TENOR=Os10t0515200-01;KEGG=Os10t0515200-01
Chr10	irgsp1_rep	five_prime_UTR	19858762	19858791	.	+	.	Parent=Os10t0515200-01
Chr10	irgsp1_rep	CDS	19858792	19860363	.	+	0	Parent=Os10t0515200-01
Chr10	irgsp1_rep	three_prime_UTR	19860364	19860660	.	+	.	Parent=Os10t0515200-01
Chr10	irgsp1_rep	mRNA	19864246	19868374	.	-	.	ID=Os10t0515400-00;Name=Os10t0515400-00;Locus_id=Os10g0515400;Note=Similar to Transposon protein.;Transcript_evidence=AK374963 (DDBJ);ORF_evidence=B6UDW1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os10t0515400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	19867502	19868374	.	-	0	Parent=Os10t0515400-00
Chr10	irgsp1_rep	CDS	19864267	19865160	.	-	0	Parent=Os10t0515400-00
Chr10	irgsp1_rep	three_prime_UTR	19864246	19864266	.	-	.	Parent=Os10t0515400-00
Chr10	irgsp1_rep	mRNA	19881378	19883248	.	+	.	ID=Os10t0515900-01;Name=Os10t0515900-01;Locus_id=Os10g0515900;Note=CytoChrome P450 family protein.;Transcript_evidence=AK106424 (DDBJ%2C Best hit);ORF_evidence=B6UDW1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=002-103-B07;Expression=AK106424;TENOR=Os10t0515900-01;KEGG=Os10t0515900-01
Chr10	irgsp1_rep	five_prime_UTR	19881378	19881455	.	+	.	Parent=Os10t0515900-01
Chr10	irgsp1_rep	CDS	19881456	19883006	.	+	0	Parent=Os10t0515900-01
Chr10	irgsp1_rep	three_prime_UTR	19883007	19883248	.	+	.	Parent=Os10t0515900-01
Chr10	irgsp1_rep	mRNA	19881521	19882957	.	-	.	ID=Os10t0516000-00;Name=Os10t0516000-00;Locus_id=Os10g0516000;Note=Hypothetical protein.;Transcript_evidence=tplb0033d13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0516000-00
Chr10	irgsp1_rep	five_prime_UTR	19882544	19882957	.	-	.	Parent=Os10t0516000-00
Chr10	irgsp1_rep	CDS	19882268	19882543	.	-	0	Parent=Os10t0516000-00
Chr10	irgsp1_rep	CDS	19881521	19882214	.	-	0	Parent=Os10t0516000-00
Chr10	irgsp1_rep	mRNA	19894753	19896794	.	+	.	ID=Os10t0516100-01;Name=Os10t0516100-01;Locus_id=Os10g0516100;RAP-DB Gene Symbol Synonym(s)=OsGDCH;RAP-DB Gene Name Synonym(s)=glycine decarboxylase H%2C H protein of glycine cleavage system;Oryzabase Gene Symbol Synonym(s)=OsGDCH;Oryzabase Gene Name Synonym(s)=glycine decarboxylase H%2C H protein of glycine cleavage system;Note=H subunit of glycine decarboxylase complex (GDC)%2C Photorespiration;Transcript_evidence=AK120480;ORF_evidence=A3C6G9;GO=Biological Process: glycine decarboxylation via glycine cleavage system (GO:0019464),Cellular Component: glycine cleavage complex (GO:0005960);InterPro=Glycine cleavage system H-protein (IPR002930),Glycine cleavage system H-protein%2C subgroup (IPR017453),Single hybrid motif (IPR011053),Biotin/lipoyl attachment (IPR000089),2-oxo acid dehydrogenase%2C lipoyl-binding site (IPR003016);NIAS_FLcDNA=J013111P19;Manual Curation=May 19%2C 2016;Literature_PMID=26903527,23421602;Oryzabase=12279;Expression=AK120480;TENOR=Os10t0516100-01;KEGG=Os10t0516100-01
Chr10	irgsp1_rep	five_prime_UTR	19894753	19894912	.	+	.	Parent=Os10t0516100-01
Chr10	irgsp1_rep	CDS	19894913	19895021	.	+	0	Parent=Os10t0516100-01
Chr10	irgsp1_rep	CDS	19895382	19895470	.	+	2	Parent=Os10t0516100-01
Chr10	irgsp1_rep	CDS	19895999	19896169	.	+	0	Parent=Os10t0516100-01
Chr10	irgsp1_rep	CDS	19896500	19896625	.	+	0	Parent=Os10t0516100-01
Chr10	irgsp1_rep	three_prime_UTR	19896626	19896794	.	+	.	Parent=Os10t0516100-01
Chr10	irgsp1_rep	mRNA	19894793	19896761	.	+	.	ID=Os10t0516100-02;Name=Os10t0516100-02;Locus_id=Os10g0516100;Oryzabase Gene Symbol Synonym(s)=OsGDCH;Oryzabase Gene Name Synonym(s)=glycine decarboxylase H%2C H protein of glycine cleavage system;Note=Similar to Glycine cleavage system H protein%2C mitochondrial precursor.;Transcript_evidence=AK062851 (DDBJ%2C Best hit),AK104840 (DDBJ%2C Best hit);ORF_evidence=A3C6G9 (UniProt);GO=Biological Process: glycine catabolic process (GO:0006546),Biological Process: glycine decarboxylation via glycine cleavage system (GO:0019464),Cellular Component: glycine cleavage complex (GO:0005960);InterPro=Glycine cleavage H-protein (IPR002930),2-oxo acid dehydrogenase%2C lipoyl-binding site (IPR003016),Single hybrid motif (IPR011053),Glycine cleavage H-protein%2C subgroup (IPR017453);NIAS_FLcDNA=001-108-A03,001-042-F04;Oryzabase=12279;TENOR=Os10t0516100-02
Chr10	irgsp1_rep	five_prime_UTR	19894793	19894912	.	+	.	Parent=Os10t0516100-02
Chr10	irgsp1_rep	CDS	19894913	19895021	.	+	0	Parent=Os10t0516100-02
Chr10	irgsp1_rep	CDS	19895382	19895470	.	+	2	Parent=Os10t0516100-02
Chr10	irgsp1_rep	CDS	19895999	19896169	.	+	0	Parent=Os10t0516100-02
Chr10	irgsp1_rep	CDS	19896500	19896625	.	+	0	Parent=Os10t0516100-02
Chr10	irgsp1_rep	three_prime_UTR	19896626	19896761	.	+	.	Parent=Os10t0516100-02
Chr10	irgsp1_rep	mRNA	19895990	19896625	.	-	.	ID=Os10t0516150-00;Name=Os10t0516150-00;Locus_id=Os10g0516150;Note=Non-protein coding transcript.;Transcript_evidence=FP093512 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0516150-00
Chr10	irgsp1_rep	exon	19896421	19896625	.	-	.	Parent=Os10t0516150-00
Chr10	irgsp1_rep	exon	19895990	19896176	.	-	.	Parent=Os10t0516150-00
Chr10	irgsp1_rep	mRNA	19899132	19900795	.	-	.	ID=Os10t0516200-00;Name=Os10t0516200-00;Locus_id=Os10g0516200;CGSNL Gene Symbol=RLCK303;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 303;Oryzabase Gene Symbol Synonym(s)=OsRLCK303;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 303;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK360766 (DDBJ);ORF_evidence=Q7XCT8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18979;TENOR=Os10t0516200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	19900393	19900795	.	-	0	Parent=Os10t0516200-00
Chr10	irgsp1_rep	CDS	19899585	19900279	.	-	2	Parent=Os10t0516200-00
Chr10	irgsp1_rep	three_prime_UTR	19899132	19899584	.	-	.	Parent=Os10t0516200-00
Chr10	irgsp1_rep	mRNA	19899960	19900603	.	+	.	ID=Os10t0516250-00;Name=Os10t0516250-00;Locus_id=Os10g0516250;Note=Hypothetical protein.;Transcript_evidence=EU951884 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0516250-00
Chr10	irgsp1_rep	five_prime_UTR	19899960	19899984	.	+	.	Parent=Os10t0516250-00
Chr10	irgsp1_rep	CDS	19899985	19900244	.	+	0	Parent=Os10t0516250-00
Chr10	irgsp1_rep	CDS	19900345	19900603	.	+	1	Parent=Os10t0516250-00
Chr10	irgsp1_rep	mRNA	19908394	19913800	.	+	.	ID=Os10t0516300-01;Name=Os10t0516300-01;Locus_id=Os10g0516300;Note=Similar to ETFQO (electron-transfer flavoprotein:ubiquinone oxidoreductase)%3B catalytic/ electron carrier/ electron-transferring-flavoprotein dehydrogenase.;Transcript_evidence=AK065934 (DDBJ%2C Best hit);ORF_evidence=NP_181868.1 (RefSeq);NIAS_FLcDNA=J013045J15;TENOR=Os10t0516300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	19908394	19908426	.	+	.	Parent=Os10t0516300-01
Chr10	irgsp1_rep	CDS	19908427	19908522	.	+	0	Parent=Os10t0516300-01
Chr10	irgsp1_rep	CDS	19908715	19908790	.	+	0	Parent=Os10t0516300-01
Chr10	irgsp1_rep	CDS	19908927	19909003	.	+	2	Parent=Os10t0516300-01
Chr10	irgsp1_rep	CDS	19909485	19909591	.	+	0	Parent=Os10t0516300-01
Chr10	irgsp1_rep	CDS	19909698	19909779	.	+	1	Parent=Os10t0516300-01
Chr10	irgsp1_rep	CDS	19909886	19909960	.	+	0	Parent=Os10t0516300-01
Chr10	irgsp1_rep	three_prime_UTR	19909961	19909961	.	+	.	Parent=Os10t0516300-01
Chr10	irgsp1_rep	three_prime_UTR	19910174	19910239	.	+	.	Parent=Os10t0516300-01
Chr10	irgsp1_rep	three_prime_UTR	19910345	19910419	.	+	.	Parent=Os10t0516300-01
Chr10	irgsp1_rep	three_prime_UTR	19910844	19910960	.	+	.	Parent=Os10t0516300-01
Chr10	irgsp1_rep	three_prime_UTR	19911284	19911352	.	+	.	Parent=Os10t0516300-01
Chr10	irgsp1_rep	three_prime_UTR	19911472	19911564	.	+	.	Parent=Os10t0516300-01
Chr10	irgsp1_rep	three_prime_UTR	19911886	19911988	.	+	.	Parent=Os10t0516300-01
Chr10	irgsp1_rep	three_prime_UTR	19912193	19912317	.	+	.	Parent=Os10t0516300-01
Chr10	irgsp1_rep	three_prime_UTR	19912470	19912519	.	+	.	Parent=Os10t0516300-01
Chr10	irgsp1_rep	three_prime_UTR	19912630	19912696	.	+	.	Parent=Os10t0516300-01
Chr10	irgsp1_rep	three_prime_UTR	19912816	19912895	.	+	.	Parent=Os10t0516300-01
Chr10	irgsp1_rep	three_prime_UTR	19913191	19913319	.	+	.	Parent=Os10t0516300-01
Chr10	irgsp1_rep	three_prime_UTR	19913427	19913493	.	+	.	Parent=Os10t0516300-01
Chr10	irgsp1_rep	three_prime_UTR	19913582	19913800	.	+	.	Parent=Os10t0516300-01
Chr10	irgsp1_rep	mRNA	19908536	19913666	.	-	.	ID=Os10t0516350-00;Name=Os10t0516350-00;Locus_id=Os10g0516350;Note=Hypothetical gene.;Transcript_evidence=BT018627 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0516350-00
Chr10	irgsp1_rep	five_prime_UTR	19913591	19913666	.	-	.	Parent=Os10t0516350-00
Chr10	irgsp1_rep	five_prime_UTR	19913413	19913501	.	-	.	Parent=Os10t0516350-00
Chr10	irgsp1_rep	five_prime_UTR	19913164	19913306	.	-	.	Parent=Os10t0516350-00
Chr10	irgsp1_rep	five_prime_UTR	19912831	19912868	.	-	.	Parent=Os10t0516350-00
Chr10	irgsp1_rep	five_prime_UTR	19912604	19912713	.	-	.	Parent=Os10t0516350-00
Chr10	irgsp1_rep	five_prime_UTR	19912191	19912341	.	-	.	Parent=Os10t0516350-00
Chr10	irgsp1_rep	five_prime_UTR	19911880	19911992	.	-	.	Parent=Os10t0516350-00
Chr10	irgsp1_rep	five_prime_UTR	19911415	19911558	.	-	.	Parent=Os10t0516350-00
Chr10	irgsp1_rep	five_prime_UTR	19910825	19910969	.	-	.	Parent=Os10t0516350-00
Chr10	irgsp1_rep	five_prime_UTR	19910311	19910402	.	-	.	Parent=Os10t0516350-00
Chr10	irgsp1_rep	five_prime_UTR	19909853	19909976	.	-	.	Parent=Os10t0516350-00
Chr10	irgsp1_rep	five_prime_UTR	19909679	19909777	.	-	.	Parent=Os10t0516350-00
Chr10	irgsp1_rep	five_prime_UTR	19909558	19909579	.	-	.	Parent=Os10t0516350-00
Chr10	irgsp1_rep	CDS	19909487	19909557	.	-	0	Parent=Os10t0516350-00
Chr10	irgsp1_rep	CDS	19908926	19909010	.	-	1	Parent=Os10t0516350-00
Chr10	irgsp1_rep	CDS	19908536	19908789	.	-	0	Parent=Os10t0516350-00
Chr10	irgsp1_rep	mRNA	19915844	19916952	.	-	.	ID=Os10t0516400-01;Name=Os10t0516400-01;Locus_id=Os10g0516400;Note=Conserved hypothetical protein.;Transcript_evidence=AK103655 (DDBJ%2C Best hit);ORF_evidence=Q94HZ4 (UniProt);NIAS_FLcDNA=J033135F01;Expression=AK103655;TENOR=Os10t0516400-01;KEGG=Os10t0516400-01
Chr10	irgsp1_rep	five_prime_UTR	19916839	19916952	.	-	.	Parent=Os10t0516400-01
Chr10	irgsp1_rep	CDS	19916032	19916838	.	-	0	Parent=Os10t0516400-01
Chr10	irgsp1_rep	three_prime_UTR	19915844	19916031	.	-	.	Parent=Os10t0516400-01
Chr10	irgsp1_rep	mRNA	19915850	19916884	.	-	.	ID=Os10t0516400-02;Name=Os10t0516400-02;Locus_id=Os10g0516400;Note=Conserved hypothetical protein.;Transcript_evidence=AK059344 (DDBJ%2C Best hit);ORF_evidence=Q94HZ4 (UniProt);NIAS_FLcDNA=001-026-B09;Expression=AK059344;TENOR=Os10t0516400-02;KEGG=Os10t0516400-02
Chr10	irgsp1_rep	five_prime_UTR	19916839	19916884	.	-	.	Parent=Os10t0516400-02
Chr10	irgsp1_rep	CDS	19916032	19916838	.	-	0	Parent=Os10t0516400-02
Chr10	irgsp1_rep	three_prime_UTR	19915850	19916031	.	-	.	Parent=Os10t0516400-02
Chr10	irgsp1_rep	mRNA	19927163	19928868	.	+	.	ID=Os10t0516450-01;Name=Os10t0516450-01;Locus_id=Os10g0516450;Note=Non-protein coding transcript.;Transcript_evidence=AK288507 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090042C05;TENOR=Os10t0516450-01
Chr10	irgsp1_rep	exon	19927163	19928868	.	+	.	Parent=Os10t0516450-01
Chr10	irgsp1_rep	mRNA	19929324	19930875	.	-	.	ID=Os10t0516500-01;Name=Os10t0516500-01;Locus_id=Os10g0516500;Note=Conserved hypothetical protein.;Transcript_evidence=AK059055 (DDBJ%2C Best hit);ORF_evidence=Q94HZ3 (UniProt);NIAS_FLcDNA=001-021-F02;Expression=AK059055;TENOR=Os10t0516500-01;KEGG=Os10t0516500-01
Chr10	irgsp1_rep	five_prime_UTR	19930874	19930875	.	-	.	Parent=Os10t0516500-01
Chr10	irgsp1_rep	CDS	19930523	19930873	.	-	0	Parent=Os10t0516500-01
Chr10	irgsp1_rep	CDS	19930005	19930388	.	-	0	Parent=Os10t0516500-01
Chr10	irgsp1_rep	three_prime_UTR	19929324	19930004	.	-	.	Parent=Os10t0516500-01
Chr10	irgsp1_rep	mRNA	19930964	19931756	.	+	.	ID=Os10t0516551-00;Name=Os10t0516551-00;Locus_id=Os10g0516551;Note=Hypothetical protein.;Transcript_evidence=BT088333 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0516551-00
Chr10	irgsp1_rep	five_prime_UTR	19930964	19931147	.	+	.	Parent=Os10t0516551-00
Chr10	irgsp1_rep	five_prime_UTR	19931323	19931348	.	+	.	Parent=Os10t0516551-00
Chr10	irgsp1_rep	CDS	19931349	19931756	.	+	0	Parent=Os10t0516551-00
Chr10	irgsp1_rep	mRNA	19954746	19955464	.	-	.	ID=Os10t0516600-00;Name=Os10t0516600-00;Locus_id=Os10g0516600;Oryzabase Gene Symbol Synonym(s)=OsSTA247;Note=Similar to predicted protein.;Transcript_evidence=EU948104 (DDBJ);ORF_evidence=NP_174595.1 (RefSeq);InterPro=Protein of unknown function DUF604 (IPR006740);Oryzabase=19515;TENOR=Os10t0516600-00;KEGG=Os10t0516600-00
Chr10	irgsp1_rep	CDS	19955053	19955464	.	-	0	Parent=Os10t0516600-00
Chr10	irgsp1_rep	CDS	19954863	19954957	.	-	2	Parent=Os10t0516600-00
Chr10	irgsp1_rep	three_prime_UTR	19954746	19954862	.	-	.	Parent=Os10t0516600-00
Chr10	irgsp1_rep	mRNA	19956384	19957356	.	-	.	ID=Os10t0516701-00;Name=Os10t0516701-00;Locus_id=Os10g0516701;Note=Similar to fringe-related protein.;Transcript_evidence=tplb0007b10 (Wheat FLcDNA);ORF_evidence=NP_174595.1 (RefSeq);InterPro=Protein of unknown function DUF604 (IPR006740);TENOR=Os10t0516701-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	19957284	19957356	.	-	.	Parent=Os10t0516701-00
Chr10	irgsp1_rep	CDS	19956384	19957283	.	-	0	Parent=Os10t0516701-00
Chr10	irgsp1_rep	mRNA	19962773	19971271	.	+	.	ID=Os10t0516800-01;Name=Os10t0516800-01;Locus_id=Os10g0516800;RAP-DB Gene Symbol Synonym(s)=OsLCBK1;RAP-DB Gene Name Synonym(s)=long-chain base kinase 1;Oryzabase Gene Symbol Synonym(s)=OsLCBK1;Oryzabase Gene Name Synonym(s)=long-chain base kinase 1;Note=Long-chain base kinase%2C Regulation of disease resistance response and programmed cell death (PCD);Transcript_evidence=AK070811;ORF_evidence=Q7XCS9;GO=Molecular Function: kinase activity (GO:0016301);InterPro=Diacylglycerol kinase%2C catalytic domain (IPR001206),NAD kinase/diacylglycerol kinase-like domain (IPR016064);NIAS_FLcDNA=J023073O10;Manual Curation=February 14%2C 2017;Literature_PMID=23054004;Oryzabase=12133;Expression=AK070811;TENOR=Os10t0516800-01;KEGG=Os10t0516800-01
Chr10	irgsp1_rep	five_prime_UTR	19962773	19962997	.	+	.	Parent=Os10t0516800-01
Chr10	irgsp1_rep	five_prime_UTR	19965113	19965227	.	+	.	Parent=Os10t0516800-01
Chr10	irgsp1_rep	CDS	19965228	19965641	.	+	0	Parent=Os10t0516800-01
Chr10	irgsp1_rep	CDS	19965760	19966128	.	+	0	Parent=Os10t0516800-01
Chr10	irgsp1_rep	CDS	19967114	19967207	.	+	0	Parent=Os10t0516800-01
Chr10	irgsp1_rep	CDS	19967290	19967327	.	+	2	Parent=Os10t0516800-01
Chr10	irgsp1_rep	CDS	19967923	19968069	.	+	0	Parent=Os10t0516800-01
Chr10	irgsp1_rep	CDS	19968733	19968832	.	+	0	Parent=Os10t0516800-01
Chr10	irgsp1_rep	CDS	19968939	19969897	.	+	2	Parent=Os10t0516800-01
Chr10	irgsp1_rep	CDS	19970296	19970448	.	+	0	Parent=Os10t0516800-01
Chr10	irgsp1_rep	three_prime_UTR	19970449	19971271	.	+	.	Parent=Os10t0516800-01
Chr10	irgsp1_rep	mRNA	19962864	19971254	.	+	.	ID=Os10t0516800-02;Name=Os10t0516800-02;Locus_id=Os10g0516800;Oryzabase Gene Symbol Synonym(s)=OsLCBK1;Oryzabase Gene Name Synonym(s)=long-chain base kinase 1;Note=Diacylglycerol kinase%2C catalytic region domain containing protein.;Transcript_evidence=AK121309 (DDBJ%2C Best hit);ORF_evidence=Q5KR50 (UniProt);GO=Biological Process: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway (GO:0007205),Molecular Function: diacylglycerol kinase activity (GO:0004143);InterPro=Diacylglycerol kinase%2C catalytic domain (IPR001206);NIAS_FLcDNA=J023112D12;Oryzabase=12133;Expression=AK121309;TENOR=Os10t0516800-02;KEGG=Os10t0516800-02
Chr10	irgsp1_rep	five_prime_UTR	19962864	19962997	.	+	.	Parent=Os10t0516800-02
Chr10	irgsp1_rep	five_prime_UTR	19965113	19965227	.	+	.	Parent=Os10t0516800-02
Chr10	irgsp1_rep	CDS	19965228	19965641	.	+	0	Parent=Os10t0516800-02
Chr10	irgsp1_rep	CDS	19965760	19966128	.	+	0	Parent=Os10t0516800-02
Chr10	irgsp1_rep	CDS	19967114	19967207	.	+	0	Parent=Os10t0516800-02
Chr10	irgsp1_rep	CDS	19967290	19967327	.	+	2	Parent=Os10t0516800-02
Chr10	irgsp1_rep	CDS	19967923	19968069	.	+	0	Parent=Os10t0516800-02
Chr10	irgsp1_rep	CDS	19968733	19968832	.	+	0	Parent=Os10t0516800-02
Chr10	irgsp1_rep	CDS	19968939	19969897	.	+	2	Parent=Os10t0516800-02
Chr10	irgsp1_rep	CDS	19970296	19970448	.	+	0	Parent=Os10t0516800-02
Chr10	irgsp1_rep	three_prime_UTR	19970449	19971254	.	+	.	Parent=Os10t0516800-02
Chr10	irgsp1_rep	mRNA	19971805	19972640	.	-	.	ID=Os10t0516900-01;Name=Os10t0516900-01;Locus_id=Os10g0516900;Note=Conserved hypothetical protein.;Transcript_evidence=AK107070 (DDBJ%2C Best hit);ORF_evidence=Q94HY8 (UniProt);NIAS_FLcDNA=002-121-E10;Expression=AK107070;TENOR=Os10t0516900-01;KEGG=Os10t0516900-01
Chr10	irgsp1_rep	five_prime_UTR	19972539	19972640	.	-	.	Parent=Os10t0516900-01
Chr10	irgsp1_rep	CDS	19972463	19972538	.	-	0	Parent=Os10t0516900-01
Chr10	irgsp1_rep	CDS	19972133	19972359	.	-	2	Parent=Os10t0516900-01
Chr10	irgsp1_rep	three_prime_UTR	19971805	19972132	.	-	.	Parent=Os10t0516900-01
Chr10	irgsp1_rep	mRNA	19987061	19988358	.	+	.	ID=Os10t0517050-01;Name=Os10t0517050-01;Locus_id=Os10g0517050;Note=Hypothetical conserved gene.;Transcript_evidence=AK240806 (DDBJ%2C Best hit);ORF_evidence=NP_001140523.1 (RefSeq);NIAS_FLcDNA=J065006G24;TENOR=Os10t0517050-01;KEGG=Os10t0517050-01
Chr10	irgsp1_rep	five_prime_UTR	19987061	19987158	.	+	.	Parent=Os10t0517050-01
Chr10	irgsp1_rep	CDS	19987159	19987296	.	+	0	Parent=Os10t0517050-01
Chr10	irgsp1_rep	three_prime_UTR	19987297	19988358	.	+	.	Parent=Os10t0517050-01
Chr10	irgsp1_rep	mRNA	19997790	20001172	.	+	.	ID=Os10t0517400-01;Name=Os10t0517400-01;Locus_id=Os10g0517400;Note=Aldo/keto reductase family protein.;Transcript_evidence=AK120676 (DDBJ%2C Best hit);ORF_evidence=B0B0A0 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldo/keto reductase (IPR001395),Aldo/keto reductase%2C conserved site (IPR018170),Aldo/keto reductase subgroup (IPR020471),NADP-dependent oxidoreductase domain (IPR023210);NIAS_FLcDNA=J013161O11;Expression=AK120676;TENOR=Os10t0517400-01;KEGG=Os10t0517400-01
Chr10	irgsp1_rep	five_prime_UTR	19997790	19997876	.	+	.	Parent=Os10t0517400-01
Chr10	irgsp1_rep	CDS	19997877	19998023	.	+	0	Parent=Os10t0517400-01
Chr10	irgsp1_rep	CDS	19999138	19999366	.	+	0	Parent=Os10t0517400-01
Chr10	irgsp1_rep	CDS	19999475	19999568	.	+	2	Parent=Os10t0517400-01
Chr10	irgsp1_rep	CDS	19999752	19999875	.	+	1	Parent=Os10t0517400-01
Chr10	irgsp1_rep	CDS	20000076	20000177	.	+	0	Parent=Os10t0517400-01
Chr10	irgsp1_rep	CDS	20000257	20000408	.	+	0	Parent=Os10t0517400-01
Chr10	irgsp1_rep	CDS	20000507	20000600	.	+	1	Parent=Os10t0517400-01
Chr10	irgsp1_rep	CDS	20000796	20000981	.	+	0	Parent=Os10t0517400-01
Chr10	irgsp1_rep	three_prime_UTR	20000982	20001172	.	+	.	Parent=Os10t0517400-01
Chr10	irgsp1_rep	mRNA	20001168	20004598	.	-	.	ID=Os10t0517500-02;Name=Os10t0517500-02;Locus_id=Os10g0517500;Oryzabase Gene Symbol Synonym(s)=RRJ1;Note=Cys/Met metabolism%2C pyridoxal phosphate-dependent enzyme domain containing protein.;Transcript_evidence=AK100465 (DDBJ%2C Best hit),AK105942 (DDBJ%2C Best hit);ORF_evidence=NP_001152224.1 (RefSeq);NIAS_FLcDNA=J023092C09,001-205-C01;Oryzabase=13918;Expression=AK100465;TENOR=Os10t0517500-02;KEGG=Os10t0517500-02 (EC:4.4.1.11)
Chr10	irgsp1_rep	five_prime_UTR	20004552	20004598	.	-	.	Parent=Os10t0517500-02
Chr10	irgsp1_rep	CDS	20003765	20004551	.	-	0	Parent=Os10t0517500-02
Chr10	irgsp1_rep	CDS	20001428	20002035	.	-	2	Parent=Os10t0517500-02
Chr10	irgsp1_rep	three_prime_UTR	20001168	20001427	.	-	.	Parent=Os10t0517500-02
Chr10	irgsp1_rep	mRNA	20011499	20011941	.	+	.	ID=Os10t0517800-01;Name=Os10t0517800-01;Locus_id=Os10g0517800;Note=Hypothetical protein.;Transcript_evidence=AK063213 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-112-D09;Expression=AK063213;TENOR=Os10t0517800-01;KEGG=Os10t0517800-01
Chr10	irgsp1_rep	five_prime_UTR	20011499	20011609	.	+	.	Parent=Os10t0517800-01
Chr10	irgsp1_rep	CDS	20011610	20011855	.	+	0	Parent=Os10t0517800-01
Chr10	irgsp1_rep	three_prime_UTR	20011856	20011941	.	+	.	Parent=Os10t0517800-01
Chr10	irgsp1_rep	mRNA	20022553	20023383	.	-	.	ID=Os10t0518000-00;Name=Os10t0518000-00;Locus_id=Os10g0518000;Note=Non-protein coding transcript.;Transcript_evidence=CT835782 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os10t0518000-00;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	exon	20023277	20023383	.	-	.	Parent=Os10t0518000-00
Chr10	irgsp1_rep	exon	20022553	20022799	.	-	.	Parent=Os10t0518000-00
Chr10	irgsp1_rep	mRNA	20024964	20028155	.	+	.	ID=Os10t0518100-01;Name=Os10t0518100-01;Locus_id=Os10g0518100;Note=RabGAP/TBC domain containing protein.;Transcript_evidence=AK099843 (DDBJ%2C Best hit),AK068787 (DDBJ%2C Best hit);ORF_evidence=XP_002877668.1 (RefSeq);GO=Biological Process: regulation of Rab GTPase activity (GO:0032313),Cellular Component: intracellular (GO:0005622),Molecular Function: Rab GTPase activator activity (GO:0005097);InterPro=Rab-GAP/TBC domain (IPR000195);NIAS_FLcDNA=J013108O08,J013164O13;Expression=AK099843;TENOR=Os10t0518100-01;KEGG=Os10t0518100-01
Chr10	irgsp1_rep	five_prime_UTR	20024964	20025088	.	+	.	Parent=Os10t0518100-01
Chr10	irgsp1_rep	CDS	20025089	20025243	.	+	0	Parent=Os10t0518100-01
Chr10	irgsp1_rep	CDS	20025349	20025484	.	+	1	Parent=Os10t0518100-01
Chr10	irgsp1_rep	CDS	20025739	20025788	.	+	0	Parent=Os10t0518100-01
Chr10	irgsp1_rep	CDS	20026410	20026463	.	+	1	Parent=Os10t0518100-01
Chr10	irgsp1_rep	CDS	20026697	20028062	.	+	1	Parent=Os10t0518100-01
Chr10	irgsp1_rep	three_prime_UTR	20028063	20028155	.	+	.	Parent=Os10t0518100-01
Chr10	irgsp1_rep	mRNA	20028778	20029168	.	+	.	ID=Os10t0518150-00;Name=Os10t0518150-00;Locus_id=Os10g0518150;Note=Non-protein coding transcript.;Transcript_evidence=BT016918 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0518150-00
Chr10	irgsp1_rep	exon	20028778	20029168	.	+	.	Parent=Os10t0518150-00
Chr10	irgsp1_rep	mRNA	20028820	20029345	.	-	.	ID=Os10t0518200-01;Name=Os10t0518200-01;Locus_id=Os10g0518200;Note=CytoChrome b5 domain containing protein.;Transcript_evidence=AK058780 (DDBJ%2C Best hit);ORF_evidence=B6SNI9 (UniProt);GO=Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome b5 (IPR001199),CytoChrome b5%2C heme-binding site (IPR018506);NIAS_FLcDNA=001-002-C06;Expression=AK058780;TENOR=Os10t0518200-01;KEGG=Os10t0518200-01
Chr10	irgsp1_rep	five_prime_UTR	20029345	20029345	.	-	.	Parent=Os10t0518200-01
Chr10	irgsp1_rep	CDS	20029281	20029344	.	-	0	Parent=Os10t0518200-01
Chr10	irgsp1_rep	CDS	20028919	20029169	.	-	2	Parent=Os10t0518200-01
Chr10	irgsp1_rep	three_prime_UTR	20028820	20028918	.	-	.	Parent=Os10t0518200-01
Chr10	irgsp1_rep	mRNA	20031594	20037198	.	+	.	ID=Os10t0518300-01;Name=Os10t0518300-01;Locus_id=Os10g0518300;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK099732 (DDBJ%2C Best hit);ORF_evidence=NP_199010.1 (RefSeq);GO=Biological Process: protein import into mitochondrial outer membrane (GO:0045040),Cellular Component: mitochondrial outer membrane translocase complex (GO:0005742),Molecular Function: binding (GO:0005488);InterPro=Plant specific mitochondrial import receptor subunit TOM20 (IPR010547),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013089P16;Expression=AK099732;TENOR=Os10t0518300-01;KEGG=Os10t0518300-01
Chr10	irgsp1_rep	five_prime_UTR	20031594	20031745	.	+	.	Parent=Os10t0518300-01
Chr10	irgsp1_rep	CDS	20031746	20032011	.	+	0	Parent=Os10t0518300-01
Chr10	irgsp1_rep	CDS	20032583	20032705	.	+	1	Parent=Os10t0518300-01
Chr10	irgsp1_rep	CDS	20032815	20032884	.	+	1	Parent=Os10t0518300-01
Chr10	irgsp1_rep	CDS	20033001	20033111	.	+	0	Parent=Os10t0518300-01
Chr10	irgsp1_rep	CDS	20033379	20033462	.	+	0	Parent=Os10t0518300-01
Chr10	irgsp1_rep	CDS	20034360	20034410	.	+	0	Parent=Os10t0518300-01
Chr10	irgsp1_rep	CDS	20034999	20035028	.	+	0	Parent=Os10t0518300-01
Chr10	irgsp1_rep	CDS	20035157	20035219	.	+	0	Parent=Os10t0518300-01
Chr10	irgsp1_rep	CDS	20035319	20035384	.	+	0	Parent=Os10t0518300-01
Chr10	irgsp1_rep	CDS	20035524	20035640	.	+	0	Parent=Os10t0518300-01
Chr10	irgsp1_rep	CDS	20035734	20035769	.	+	0	Parent=Os10t0518300-01
Chr10	irgsp1_rep	CDS	20036093	20036212	.	+	0	Parent=Os10t0518300-01
Chr10	irgsp1_rep	CDS	20036343	20036513	.	+	0	Parent=Os10t0518300-01
Chr10	irgsp1_rep	CDS	20036733	20036843	.	+	0	Parent=Os10t0518300-01
Chr10	irgsp1_rep	three_prime_UTR	20036844	20037198	.	+	.	Parent=Os10t0518300-01
Chr10	irgsp1_rep	mRNA	20037627	20038727	.	+	.	ID=Os10t0518400-01;Name=Os10t0518400-01;Locus_id=Os10g0518400;Note=Conserved hypothetical protein.;Transcript_evidence=AK102374 (DDBJ%2C Best hit);ORF_evidence=Q94HX2 (UniProt);NIAS_FLcDNA=J033091N12;Expression=AK102374;TENOR=Os10t0518400-01;KEGG=Os10t0518400-01
Chr10	irgsp1_rep	five_prime_UTR	20037627	20038003	.	+	.	Parent=Os10t0518400-01
Chr10	irgsp1_rep	CDS	20038004	20038540	.	+	0	Parent=Os10t0518400-01
Chr10	irgsp1_rep	three_prime_UTR	20038541	20038727	.	+	.	Parent=Os10t0518400-01
Chr10	irgsp1_rep	mRNA	20037807	20039458	.	+	.	ID=Os10t0518400-02;Name=Os10t0518400-02;Locus_id=Os10g0518400;Note=Conserved hypothetical protein.;Transcript_evidence=AK110909 (DDBJ%2C Best hit);ORF_evidence=Q94HX2 (UniProt);NIAS_FLcDNA=002-173-B12;Expression=AK110909;TENOR=Os10t0518400-02;KEGG=Os10t0518400-02
Chr10	irgsp1_rep	five_prime_UTR	20037807	20038003	.	+	.	Parent=Os10t0518400-02
Chr10	irgsp1_rep	CDS	20038004	20038540	.	+	0	Parent=Os10t0518400-02
Chr10	irgsp1_rep	three_prime_UTR	20038541	20039458	.	+	.	Parent=Os10t0518400-02
Chr10	irgsp1_rep	mRNA	20060911	20070532	.	+	.	ID=Os10t0518800-01;Name=Os10t0518800-01;Locus_id=Os10g0518800;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK100288 (DDBJ%2C Best hit);ORF_evidence=NP_001151918.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023075H06;Expression=AK100288;TENOR=Os10t0518800-01;KEGG=Os10t0518800-01
Chr10	irgsp1_rep	five_prime_UTR	20060911	20061145	.	+	.	Parent=Os10t0518800-01
Chr10	irgsp1_rep	CDS	20061146	20061343	.	+	0	Parent=Os10t0518800-01
Chr10	irgsp1_rep	CDS	20062416	20062670	.	+	0	Parent=Os10t0518800-01
Chr10	irgsp1_rep	CDS	20062753	20062877	.	+	0	Parent=Os10t0518800-01
Chr10	irgsp1_rep	CDS	20062970	20063014	.	+	1	Parent=Os10t0518800-01
Chr10	irgsp1_rep	CDS	20063773	20063854	.	+	1	Parent=Os10t0518800-01
Chr10	irgsp1_rep	CDS	20064254	20064322	.	+	0	Parent=Os10t0518800-01
Chr10	irgsp1_rep	CDS	20064431	20064601	.	+	0	Parent=Os10t0518800-01
Chr10	irgsp1_rep	CDS	20064685	20064750	.	+	0	Parent=Os10t0518800-01
Chr10	irgsp1_rep	CDS	20065564	20065632	.	+	0	Parent=Os10t0518800-01
Chr10	irgsp1_rep	CDS	20065726	20065794	.	+	0	Parent=Os10t0518800-01
Chr10	irgsp1_rep	CDS	20066339	20066397	.	+	0	Parent=Os10t0518800-01
Chr10	irgsp1_rep	CDS	20066633	20066914	.	+	1	Parent=Os10t0518800-01
Chr10	irgsp1_rep	CDS	20067441	20067574	.	+	1	Parent=Os10t0518800-01
Chr10	irgsp1_rep	CDS	20068042	20068136	.	+	2	Parent=Os10t0518800-01
Chr10	irgsp1_rep	CDS	20068238	20068282	.	+	0	Parent=Os10t0518800-01
Chr10	irgsp1_rep	CDS	20068405	20068464	.	+	0	Parent=Os10t0518800-01
Chr10	irgsp1_rep	CDS	20068638	20068739	.	+	0	Parent=Os10t0518800-01
Chr10	irgsp1_rep	CDS	20069007	20069058	.	+	0	Parent=Os10t0518800-01
Chr10	irgsp1_rep	CDS	20069137	20069189	.	+	2	Parent=Os10t0518800-01
Chr10	irgsp1_rep	CDS	20069293	20069357	.	+	0	Parent=Os10t0518800-01
Chr10	irgsp1_rep	CDS	20069734	20069785	.	+	1	Parent=Os10t0518800-01
Chr10	irgsp1_rep	CDS	20069935	20070012	.	+	0	Parent=Os10t0518800-01
Chr10	irgsp1_rep	three_prime_UTR	20070013	20070532	.	+	.	Parent=Os10t0518800-01
Chr10	irgsp1_rep	mRNA	20070802	20074175	.	-	.	ID=Os10t0518900-01;Name=Os10t0518900-01;Locus_id=Os10g0518900;Oryzabase Gene Symbol Synonym(s)=ERCC1 (Rad10)%2C ERCC1%2C Rad10;Note=Similar to DNA excision repair protein ERCC-1 (EC 3.1.-.-) (AtERCC1) (AtRAD10) (Ultraviolet hypersensitive 7).;Transcript_evidence=AK070764 (DDBJ%2C Best hit);ORF_evidence=B6UFK1 (UniProt);GO=Biological Process: DNA repair (GO:0006281),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: damaged DNA binding (GO:0003684),Molecular Function: endonuclease activity (GO:0004519);InterPro=Helix-hairpin-helix DNA-binding motif%2C class 1 (IPR003583),DNA repair protein rad10 (IPR004579),RuvA domain 2-like (IPR010994),Restriction endonuclease%2C type II-like (IPR011335);NIAS_FLcDNA=J023070H24;Oryzabase=21266;Expression=AK070764;TENOR=Os10t0518900-01;KEGG=Os10t0518900-01
Chr10	irgsp1_rep	CDS	20073907	20074175	.	-	0	Parent=Os10t0518900-01
Chr10	irgsp1_rep	CDS	20073766	20073829	.	-	1	Parent=Os10t0518900-01
Chr10	irgsp1_rep	CDS	20073550	20073653	.	-	0	Parent=Os10t0518900-01
Chr10	irgsp1_rep	CDS	20073103	20073202	.	-	1	Parent=Os10t0518900-01
Chr10	irgsp1_rep	CDS	20072921	20072997	.	-	0	Parent=Os10t0518900-01
Chr10	irgsp1_rep	CDS	20072453	20072552	.	-	1	Parent=Os10t0518900-01
Chr10	irgsp1_rep	CDS	20072158	20072229	.	-	0	Parent=Os10t0518900-01
Chr10	irgsp1_rep	CDS	20071936	20072004	.	-	0	Parent=Os10t0518900-01
Chr10	irgsp1_rep	CDS	20071415	20071723	.	-	0	Parent=Os10t0518900-01
Chr10	irgsp1_rep	three_prime_UTR	20070802	20071414	.	-	.	Parent=Os10t0518900-01
Chr10	irgsp1_rep	mRNA	20082041	20087739	.	-	.	ID=Os10t0519300-00;Name=Os10t0519300-00;Locus_id=Os10g0519300;Note=Similar to ATP binding protein.;Transcript_evidence=EU964396 (DDBJ);ORF_evidence=NP_001150338.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959);TENOR=Os10t0519300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	20087389	20087739	.	-	0	Parent=Os10t0519300-00
Chr10	irgsp1_rep	CDS	20082041	20083369	.	-	0	Parent=Os10t0519300-00
Chr10	irgsp1_rep	mRNA	20082065	20083650	.	+	.	ID=Os10t0519400-00;Name=Os10t0519400-00;Locus_id=Os10g0519400;Note=Hypothetical protein.;Transcript_evidence=AK359252 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0519400-00
Chr10	irgsp1_rep	five_prime_UTR	20082065	20082940	.	+	.	Parent=Os10t0519400-00
Chr10	irgsp1_rep	CDS	20082941	20083650	.	+	0	Parent=Os10t0519400-00
Chr10	irgsp1_rep	mRNA	20087328	20088035	.	+	.	ID=Os10t0519500-01;Name=Os10t0519500-01;Locus_id=Os10g0519500;Note=Hypothetical protein.;Transcript_evidence=AK109263 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-185-B04;Expression=AK109263;TENOR=Os10t0519500-01;KEGG=Os10t0519500-01
Chr10	irgsp1_rep	five_prime_UTR	20087328	20087399	.	+	.	Parent=Os10t0519500-01
Chr10	irgsp1_rep	CDS	20087400	20087834	.	+	0	Parent=Os10t0519500-01
Chr10	irgsp1_rep	three_prime_UTR	20087835	20088035	.	+	.	Parent=Os10t0519500-01
Chr10	irgsp1_rep	mRNA	20091716	20094954	.	+	.	ID=Os10t0519600-01;Name=Os10t0519600-01;Locus_id=Os10g0519600;Note=Protein of unknown function DUF791 family protein.;Transcript_evidence=AK103488 (DDBJ%2C Best hit);ORF_evidence=Q337A9 (UniProt);InterPro=Protein of unknown function DUF791 (IPR008509),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J033130M19;Expression=AK103488;TENOR=Os10t0519600-01;KEGG=Os10t0519600-01
Chr10	irgsp1_rep	five_prime_UTR	20091716	20091796	.	+	.	Parent=Os10t0519600-01
Chr10	irgsp1_rep	CDS	20091797	20091947	.	+	0	Parent=Os10t0519600-01
Chr10	irgsp1_rep	CDS	20092128	20092272	.	+	2	Parent=Os10t0519600-01
Chr10	irgsp1_rep	CDS	20092362	20092530	.	+	1	Parent=Os10t0519600-01
Chr10	irgsp1_rep	CDS	20093315	20093585	.	+	0	Parent=Os10t0519600-01
Chr10	irgsp1_rep	CDS	20093682	20093944	.	+	2	Parent=Os10t0519600-01
Chr10	irgsp1_rep	CDS	20094027	20094242	.	+	0	Parent=Os10t0519600-01
Chr10	irgsp1_rep	CDS	20094370	20094481	.	+	0	Parent=Os10t0519600-01
Chr10	irgsp1_rep	CDS	20094585	20094628	.	+	2	Parent=Os10t0519600-01
Chr10	irgsp1_rep	three_prime_UTR	20094629	20094954	.	+	.	Parent=Os10t0519600-01
Chr10	irgsp1_rep	mRNA	20092237	20094986	.	+	.	ID=Os10t0519600-02;Name=Os10t0519600-02;Locus_id=Os10g0519600;Note=Similar to Major Facilitator Superfamily protein%2C expressed.;Transcript_evidence=AK061924 (DDBJ%2C Best hit);ORF_evidence=Q337A9 (UniProt);InterPro=Protein of unknown function DUF791 (IPR008509),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=001-042-B12;Expression=AK061924;TENOR=Os10t0519600-02;KEGG=Os10t0519600-02
Chr10	irgsp1_rep	five_prime_UTR	20092237	20092237	.	+	.	Parent=Os10t0519600-02
Chr10	irgsp1_rep	CDS	20092238	20092272	.	+	0	Parent=Os10t0519600-02
Chr10	irgsp1_rep	CDS	20092362	20092530	.	+	1	Parent=Os10t0519600-02
Chr10	irgsp1_rep	CDS	20093315	20093585	.	+	0	Parent=Os10t0519600-02
Chr10	irgsp1_rep	CDS	20093682	20093944	.	+	2	Parent=Os10t0519600-02
Chr10	irgsp1_rep	CDS	20094027	20094242	.	+	0	Parent=Os10t0519600-02
Chr10	irgsp1_rep	CDS	20094370	20094481	.	+	0	Parent=Os10t0519600-02
Chr10	irgsp1_rep	CDS	20094588	20094628	.	+	2	Parent=Os10t0519600-02
Chr10	irgsp1_rep	three_prime_UTR	20094629	20094986	.	+	.	Parent=Os10t0519600-02
Chr10	irgsp1_rep	mRNA	20093773	20094504	.	-	.	ID=Os10t0519650-00;Name=Os10t0519650-00;Locus_id=Os10g0519650;Note=Non-protein coding transcript.;Transcript_evidence=BT063951 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0519650-00
Chr10	irgsp1_rep	exon	20094343	20094504	.	-	.	Parent=Os10t0519650-00
Chr10	irgsp1_rep	exon	20094037	20094215	.	-	.	Parent=Os10t0519650-00
Chr10	irgsp1_rep	exon	20093773	20093953	.	-	.	Parent=Os10t0519650-00
Chr10	irgsp1_rep	mRNA	20095576	20096519	.	-	.	ID=Os10t0519700-01;Name=Os10t0519700-01;Locus_id=Os10g0519700;Note=Mitochondrial import inner membrane translocase%2C subunit Tim17/22 family protein.;Transcript_evidence=AK107812 (DDBJ%2C Best hit);ORF_evidence=B6T2P3 (UniProt);InterPro=Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 (IPR003397);NIAS_FLcDNA=002-133-F03;Expression=AK107812;TENOR=Os10t0519700-01;KEGG=Os10t0519700-01
Chr10	irgsp1_rep	five_prime_UTR	20096415	20096519	.	-	.	Parent=Os10t0519700-01
Chr10	irgsp1_rep	CDS	20095827	20096414	.	-	0	Parent=Os10t0519700-01
Chr10	irgsp1_rep	three_prime_UTR	20095576	20095826	.	-	.	Parent=Os10t0519700-01
Chr10	irgsp1_rep	mRNA	20095827	20096560	.	+	.	ID=Os10t0519750-00;Name=Os10t0519750-00;Locus_id=Os10g0519750;Note=Hypothetical gene.;Transcript_evidence=EU944584 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0519750-00;KEGG=Os10t0519750-00
Chr10	irgsp1_rep	CDS	20095827	20095903	.	+	0	Parent=Os10t0519750-00
Chr10	irgsp1_rep	CDS	20096003	20096501	.	+	1	Parent=Os10t0519750-00
Chr10	irgsp1_rep	three_prime_UTR	20096502	20096560	.	+	.	Parent=Os10t0519750-00
Chr10	irgsp1_rep	mRNA	20098367	20100033	.	+	.	ID=Os10t0519800-01;Name=Os10t0519800-01;Locus_id=Os10g0519800;RAP-DB Gene Symbol Synonym(s)=OsFBDUF48%2C PEG3;RAP-DB Gene Name Synonym(s)=Paternally Expressed Gene3;Oryzabase Gene Symbol Synonym(s)=Os_F0794%2C OsFBDUF48%2C FBDUF48%2C PEG3;Oryzabase Gene Name Synonym(s)=paternally expressed gene 3;Note=DUF295-domain protein%2C Regulation of seed development;Transcript_evidence=AK108172;ORF_evidence=Q9FWD4;GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain (IPR001810),Domain unknown function DUF295 (IPR005174);NIAS_FLcDNA=002-140-A01;Manual Curation=April 30%2C 2017;Literature_PMID=28295376;Oryzabase=17462;Expression=AK108172;TENOR=Os10t0519800-01;KEGG=Os10t0519800-01
Chr10	irgsp1_rep	five_prime_UTR	20098367	20098453	.	+	.	Parent=Os10t0519800-01
Chr10	irgsp1_rep	CDS	20098454	20099773	.	+	0	Parent=Os10t0519800-01
Chr10	irgsp1_rep	three_prime_UTR	20099774	20100033	.	+	.	Parent=Os10t0519800-01
Chr10	irgsp1_rep	mRNA	20108921	20110180	.	+	.	ID=Os10t0520100-00;Name=Os10t0520100-00;Locus_id=Os10g0520100;Oryzabase Gene Symbol Synonym(s)=OsFbox559%2C Os_F0572;Oryzabase Gene Name Synonym(s)=F-box protein 559;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=EU968190 (DDBJ);ORF_evidence=B6TT75 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174);Oryzabase=17328;TENOR=Os10t0520100-00;KEGG=Os10t0520100-00
Chr10	irgsp1_rep	five_prime_UTR	20108921	20108943	.	+	.	Parent=Os10t0520100-00
Chr10	irgsp1_rep	CDS	20108944	20110179	.	+	0	Parent=Os10t0520100-00
Chr10	irgsp1_rep	three_prime_UTR	20110180	20110180	.	+	.	Parent=Os10t0520100-00
Chr10	irgsp1_rep	mRNA	20114954	20116072	.	+	.	ID=Os10t0520400-00;Name=Os10t0520400-00;Locus_id=Os10g0520400;Oryzabase Gene Symbol Synonym(s)=Os_F0771;Note=Protein of unknown function DUF295 family protein.;Transcript_evidence=AK365624 (DDBJ);ORF_evidence=NP_001176242.1 (RefSeq);InterPro=Protein of unknown function DUF295 (IPR005174);Oryzabase=17552;TENOR=Os10t0520400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	20114954	20114956	.	+	.	Parent=Os10t0520400-00
Chr10	irgsp1_rep	CDS	20114957	20116072	.	+	0	Parent=Os10t0520400-00
Chr10	irgsp1_rep	mRNA	20135412	20139742	.	-	.	ID=Os10t0520600-01;Name=Os10t0520600-01;Locus_id=Os10g0520600;Note=UBX domain containing protein.;Transcript_evidence=AK061230 (DDBJ%2C Best hit);ORF_evidence=NP_001149312.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=UBX (IPR001012),UAS (IPR006577);NIAS_FLcDNA=006-211-A04;Expression=AK061230;TENOR=Os10t0520600-01;KEGG=Os10t0520600-01
Chr10	irgsp1_rep	five_prime_UTR	20139742	20139742	.	-	.	Parent=Os10t0520600-01
Chr10	irgsp1_rep	CDS	20139438	20139741	.	-	0	Parent=Os10t0520600-01
Chr10	irgsp1_rep	CDS	20138772	20138971	.	-	2	Parent=Os10t0520600-01
Chr10	irgsp1_rep	CDS	20136809	20136979	.	-	0	Parent=Os10t0520600-01
Chr10	irgsp1_rep	CDS	20136201	20136404	.	-	0	Parent=Os10t0520600-01
Chr10	irgsp1_rep	CDS	20135581	20135811	.	-	0	Parent=Os10t0520600-01
Chr10	irgsp1_rep	three_prime_UTR	20135412	20135580	.	-	.	Parent=Os10t0520600-01
Chr10	irgsp1_rep	mRNA	20135412	20139736	.	-	.	ID=Os10t0520600-02;Name=Os10t0520600-02;Locus_id=Os10g0520600;Note=Similar to fas-associated factor 1-like protein.;Transcript_evidence=AK071110 (DDBJ%2C Best hit);ORF_evidence=NP_001149312.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=UBX (IPR001012),UAS (IPR006577),UBA-like (IPR009060);NIAS_FLcDNA=J023077I21;Expression=AK071110;TENOR=Os10t0520600-02;KEGG=Os10t0520600-02
Chr10	irgsp1_rep	five_prime_UTR	20139567	20139736	.	-	.	Parent=Os10t0520600-02
Chr10	irgsp1_rep	CDS	20138772	20139566	.	-	0	Parent=Os10t0520600-02
Chr10	irgsp1_rep	CDS	20136809	20136979	.	-	0	Parent=Os10t0520600-02
Chr10	irgsp1_rep	CDS	20136201	20136404	.	-	0	Parent=Os10t0520600-02
Chr10	irgsp1_rep	CDS	20135581	20135811	.	-	0	Parent=Os10t0520600-02
Chr10	irgsp1_rep	three_prime_UTR	20135412	20135580	.	-	.	Parent=Os10t0520600-02
Chr10	irgsp1_rep	mRNA	20140666	20144848	.	-	.	ID=Os10t0520700-01;Name=Os10t0520700-01;Locus_id=Os10g0520700;CGSNL Gene Symbol=LIP1;CGSNL Gene Name=LC3-INTERACTING PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsLIP1;Oryzabase Gene Name Synonym(s)=LC3-interacting protein 1;Note=Zinc finger%2C HIT-type domain containing protein.;Transcript_evidence=AK103797 (DDBJ%2C Best hit);ORF_evidence=B6TE25 (UniProt);InterPro=Zinc finger%2C HIT-type (IPR007529);NIAS_FLcDNA=J033145P15;Oryzabase=22843;Expression=AK103797;TENOR=Os10t0520700-01;KEGG=Os10t0520700-01
Chr10	irgsp1_rep	five_prime_UTR	20144751	20144848	.	-	.	Parent=Os10t0520700-01
Chr10	irgsp1_rep	CDS	20144638	20144750	.	-	0	Parent=Os10t0520700-01
Chr10	irgsp1_rep	CDS	20144488	20144560	.	-	1	Parent=Os10t0520700-01
Chr10	irgsp1_rep	CDS	20143478	20143634	.	-	0	Parent=Os10t0520700-01
Chr10	irgsp1_rep	CDS	20142341	20142382	.	-	2	Parent=Os10t0520700-01
Chr10	irgsp1_rep	CDS	20140872	20141749	.	-	2	Parent=Os10t0520700-01
Chr10	irgsp1_rep	three_prime_UTR	20140666	20140871	.	-	.	Parent=Os10t0520700-01
Chr10	irgsp1_rep	mRNA	20147963	20150864	.	+	.	ID=Os10t0520900-00;Name=Os10t0520900-00;Locus_id=Os10g0520900;Note=Hypothetical conserved gene.;Transcript_evidence=EU973237 (DDBJ);ORF_evidence=Q5TJC3 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Cell division protein Cdc14 (IPR012535),Armadillo-type fold (IPR016024);TENOR=Os10t0520900-00;KEGG=Os10t0520900-00
Chr10	irgsp1_rep	five_prime_UTR	20147963	20148057	.	+	.	Parent=Os10t0520900-00
Chr10	irgsp1_rep	CDS	20148058	20148310	.	+	0	Parent=Os10t0520900-00
Chr10	irgsp1_rep	CDS	20148410	20148618	.	+	2	Parent=Os10t0520900-00
Chr10	irgsp1_rep	CDS	20150239	20150337	.	+	0	Parent=Os10t0520900-00
Chr10	irgsp1_rep	CDS	20150416	20150489	.	+	0	Parent=Os10t0520900-00
Chr10	irgsp1_rep	CDS	20150597	20150864	.	+	1	Parent=Os10t0520900-00
Chr10	irgsp1_rep	mRNA	20151697	20152254	.	-	.	ID=Os10t0520950-00;Name=Os10t0520950-00;Locus_id=Os10g0520950;Note=Hypothetical conserved gene.;Transcript_evidence=EU951626 (DDBJ);ORF_evidence=B8BHW9 (UniProt);TENOR=Os10t0520950-00;KEGG=Os10t0520950-00
Chr10	irgsp1_rep	CDS	20152119	20152254	.	-	0	Parent=Os10t0520950-00
Chr10	irgsp1_rep	CDS	20151697	20152019	.	-	2	Parent=Os10t0520950-00
Chr10	irgsp1_rep	mRNA	20154610	20159181	.	-	.	ID=Os10t0521000-01;Name=Os10t0521000-01;Locus_id=Os10g0521000;RAP-DB Gene Symbol Synonym(s)=OsTRE1;RAP-DB Gene Name Synonym(s)=TREHALASE 1;CGSNL Gene Symbol=TRE1;CGSNL Gene Name=TREHALASE 1;Oryzabase Gene Symbol Synonym(s)=OsTRE%2C OsTRE1;Oryzabase Gene Name Synonym(s)=trehalase 1;Note=Trehalase%2C Salt stress tolerance;Transcript_evidence=AK108163;ORF_evidence=Q9FWC1;GO=Biological Process: trehalose metabolic process (GO:0005991),Molecular Function: catalytic activity (GO:0003824),Molecular Function: alpha%2Calpha-trehalase activity (GO:0004555);InterPro=Six-hairpin glycosidase superfamily (IPR008928),Six-hairpin glycosidase-like superfamily (IPR012341),Glycoside hydrolase%2C family 37 (IPR001661),Glycoside hydrolase%2C family 37%2C conserved site (IPR018232);NIAS_FLcDNA=002-139-H02;Manual Curation=November 7%2C 2018;Literature_PMID=30393190,26233894;Oryzabase=9039;Expression=AK108163;TENOR=Os10t0521000-01;KEGG=Os10t0521000-01 (EC:3.2.1.28);Subcellular location=cytoplasm (GO:0005737)
Chr10	irgsp1_rep	five_prime_UTR	20159156	20159181	.	-	.	Parent=Os10t0521000-01
Chr10	irgsp1_rep	CDS	20158653	20159155	.	-	0	Parent=Os10t0521000-01
Chr10	irgsp1_rep	CDS	20157734	20157853	.	-	1	Parent=Os10t0521000-01
Chr10	irgsp1_rep	CDS	20157345	20157460	.	-	1	Parent=Os10t0521000-01
Chr10	irgsp1_rep	CDS	20157149	20157249	.	-	2	Parent=Os10t0521000-01
Chr10	irgsp1_rep	CDS	20156951	20157057	.	-	0	Parent=Os10t0521000-01
Chr10	irgsp1_rep	CDS	20156714	20156786	.	-	1	Parent=Os10t0521000-01
Chr10	irgsp1_rep	CDS	20156268	20156435	.	-	0	Parent=Os10t0521000-01
Chr10	irgsp1_rep	CDS	20156085	20156172	.	-	0	Parent=Os10t0521000-01
Chr10	irgsp1_rep	CDS	20155498	20155615	.	-	2	Parent=Os10t0521000-01
Chr10	irgsp1_rep	CDS	20155203	20155416	.	-	1	Parent=Os10t0521000-01
Chr10	irgsp1_rep	CDS	20154878	20154961	.	-	0	Parent=Os10t0521000-01
Chr10	irgsp1_rep	three_prime_UTR	20154610	20154877	.	-	.	Parent=Os10t0521000-01
Chr10	irgsp1_rep	mRNA	20160992	20162434	.	-	.	ID=Os10t0521100-01;Name=Os10t0521100-01;Locus_id=Os10g0521100;CGSNL Gene Symbol=ADF10;CGSNL Gene Name=ACTIN DEPOLYMERIZING FACTOR 10;Oryzabase Gene Symbol Synonym(s)=OsADF10;Oryzabase Gene Name Synonym(s)=actin depolymerizing factor 10;Note=Similar to Actin-depolymerizing factor 6 (ADF-6) (AtADF6).;Transcript_evidence=AK121749 (DDBJ%2C Best hit),AK064063 (DDBJ%2C Best hit);ORF_evidence=Q337A5 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: actin binding (GO:0003779);InterPro=Actin-binding%2C cofilin/tropomyosin type (IPR002108);NIAS_FLcDNA=J033087E18,001-125-G01;Oryzabase=12509;TENOR=Os10t0521100-01
Chr10	irgsp1_rep	five_prime_UTR	20162396	20162434	.	-	.	Parent=Os10t0521100-01
Chr10	irgsp1_rep	CDS	20162369	20162395	.	-	0	Parent=Os10t0521100-01
Chr10	irgsp1_rep	CDS	20161986	20162257	.	-	0	Parent=Os10t0521100-01
Chr10	irgsp1_rep	CDS	20161258	20161414	.	-	1	Parent=Os10t0521100-01
Chr10	irgsp1_rep	three_prime_UTR	20160992	20161257	.	-	.	Parent=Os10t0521100-01
Chr10	irgsp1_rep	mRNA	20166188	20170797	.	+	.	ID=Os10t0521300-01;Name=Os10t0521300-01;Locus_id=Os10g0521300;Note=Inner membrane protein OXA1-like%2C mitochondrial precursor.;Transcript_evidence=AK287792 (DDBJ%2C Best hit);ORF_evidence=Q10SN8 (UniProt);GO=Biological Process: protein insertion into membrane (GO:0051205),Cellular Component: integral to membrane (GO:0016021);InterPro=Membrane insertion protein%2C OxaA/YidC (IPR001708);NIAS_FLcDNA=J065173P14;TENOR=Os10t0521300-01;KEGG=Os10t0521300-01
Chr10	irgsp1_rep	five_prime_UTR	20166188	20166191	.	+	.	Parent=Os10t0521300-01
Chr10	irgsp1_rep	CDS	20166192	20166619	.	+	0	Parent=Os10t0521300-01
Chr10	irgsp1_rep	CDS	20166724	20166814	.	+	1	Parent=Os10t0521300-01
Chr10	irgsp1_rep	CDS	20168153	20168194	.	+	0	Parent=Os10t0521300-01
Chr10	irgsp1_rep	CDS	20168334	20168392	.	+	0	Parent=Os10t0521300-01
Chr10	irgsp1_rep	CDS	20168714	20168789	.	+	1	Parent=Os10t0521300-01
Chr10	irgsp1_rep	CDS	20168890	20169021	.	+	0	Parent=Os10t0521300-01
Chr10	irgsp1_rep	CDS	20169406	20169513	.	+	0	Parent=Os10t0521300-01
Chr10	irgsp1_rep	CDS	20170195	20170249	.	+	0	Parent=Os10t0521300-01
Chr10	irgsp1_rep	CDS	20170342	20170592	.	+	2	Parent=Os10t0521300-01
Chr10	irgsp1_rep	three_prime_UTR	20170593	20170797	.	+	.	Parent=Os10t0521300-01
Chr10	irgsp1_rep	mRNA	20175634	20179154	.	+	.	ID=Os10t0521400-01;Name=Os10t0521400-01;Locus_id=Os10g0521400;Note=Alpha/beta hydrolase fold-1 domain containing protein.;Transcript_evidence=AK109013 (DDBJ%2C Best hit);ORF_evidence=Q10SN5 (UniProt);NIAS_FLcDNA=002-154-A01;Expression=AK109013;TENOR=Os10t0521400-01;KEGG=Os10t0521400-01
Chr10	irgsp1_rep	five_prime_UTR	20175634	20175757	.	+	.	Parent=Os10t0521400-01
Chr10	irgsp1_rep	CDS	20175758	20176060	.	+	0	Parent=Os10t0521400-01
Chr10	irgsp1_rep	CDS	20176545	20177024	.	+	0	Parent=Os10t0521400-01
Chr10	irgsp1_rep	CDS	20178674	20178955	.	+	0	Parent=Os10t0521400-01
Chr10	irgsp1_rep	three_prime_UTR	20178956	20179154	.	+	.	Parent=Os10t0521400-01
Chr10	irgsp1_rep	mRNA	20176541	20178903	.	-	.	ID=Os10t0521450-00;Name=Os10t0521450-00;Locus_id=Os10g0521450;Note=Hypothetical gene.;Transcript_evidence=EU948031 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0521450-00
Chr10	irgsp1_rep	five_prime_UTR	20178902	20178903	.	-	.	Parent=Os10t0521450-00
Chr10	irgsp1_rep	CDS	20178669	20178901	.	-	0	Parent=Os10t0521450-00
Chr10	irgsp1_rep	CDS	20176541	20177019	.	-	1	Parent=Os10t0521450-00
Chr10	irgsp1_rep	mRNA	20181672	20185391	.	+	.	ID=Os10t0521500-01;Name=Os10t0521500-01;Locus_id=Os10g0521500;Note=Esterase/lipase/thioesterase domain containing protein.;Transcript_evidence=AK105796 (DDBJ%2C Best hit);ORF_evidence=NP_001148225.1 (RefSeq);NIAS_FLcDNA=001-203-A03;Expression=AK105796;TENOR=Os10t0521500-01;KEGG=Os10t0521500-01
Chr10	irgsp1_rep	five_prime_UTR	20181672	20181902	.	+	.	Parent=Os10t0521500-01
Chr10	irgsp1_rep	CDS	20181903	20181921	.	+	0	Parent=Os10t0521500-01
Chr10	irgsp1_rep	CDS	20182023	20182291	.	+	2	Parent=Os10t0521500-01
Chr10	irgsp1_rep	CDS	20183515	20183726	.	+	0	Parent=Os10t0521500-01
Chr10	irgsp1_rep	CDS	20184527	20184794	.	+	1	Parent=Os10t0521500-01
Chr10	irgsp1_rep	CDS	20184880	20185173	.	+	0	Parent=Os10t0521500-01
Chr10	irgsp1_rep	three_prime_UTR	20185174	20185391	.	+	.	Parent=Os10t0521500-01
Chr10	irgsp1_rep	mRNA	20182012	20185186	.	-	.	ID=Os10t0521550-00;Name=Os10t0521550-00;Locus_id=Os10g0521550;Note=Hypothetical protein.;Transcript_evidence=tplb0041i10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0521550-00
Chr10	irgsp1_rep	five_prime_UTR	20184525	20185186	.	-	.	Parent=Os10t0521550-00
Chr10	irgsp1_rep	five_prime_UTR	20183718	20183724	.	-	.	Parent=Os10t0521550-00
Chr10	irgsp1_rep	CDS	20183511	20183717	.	-	0	Parent=Os10t0521550-00
Chr10	irgsp1_rep	CDS	20182240	20182287	.	-	0	Parent=Os10t0521550-00
Chr10	irgsp1_rep	three_prime_UTR	20182012	20182239	.	-	.	Parent=Os10t0521550-00
Chr10	irgsp1_rep	mRNA	20185274	20189629	.	-	.	ID=Os10t0521600-01;Name=Os10t0521600-01;Locus_id=Os10g0521600;Oryzabase Gene Symbol Synonym(s)=XBOS33;Note=Similar to Ankyrin-1 (Erythrocyte ankyrin).;Transcript_evidence=AK065223 (DDBJ%2C Best hit);ORF_evidence=B6SWT5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J013002G21;Oryzabase=11147;Expression=AK065223;TENOR=Os10t0521600-01;KEGG=Os10t0521600-01
Chr10	irgsp1_rep	five_prime_UTR	20189423	20189629	.	-	.	Parent=Os10t0521600-01
Chr10	irgsp1_rep	CDS	20189246	20189422	.	-	0	Parent=Os10t0521600-01
Chr10	irgsp1_rep	CDS	20189056	20189115	.	-	0	Parent=Os10t0521600-01
Chr10	irgsp1_rep	CDS	20188607	20188678	.	-	0	Parent=Os10t0521600-01
Chr10	irgsp1_rep	CDS	20188304	20188512	.	-	0	Parent=Os10t0521600-01
Chr10	irgsp1_rep	CDS	20188052	20188216	.	-	1	Parent=Os10t0521600-01
Chr10	irgsp1_rep	CDS	20187914	20187959	.	-	1	Parent=Os10t0521600-01
Chr10	irgsp1_rep	three_prime_UTR	20187904	20187913	.	-	.	Parent=Os10t0521600-01
Chr10	irgsp1_rep	three_prime_UTR	20187738	20187784	.	-	.	Parent=Os10t0521600-01
Chr10	irgsp1_rep	three_prime_UTR	20187475	20187618	.	-	.	Parent=Os10t0521600-01
Chr10	irgsp1_rep	three_prime_UTR	20186835	20186926	.	-	.	Parent=Os10t0521600-01
Chr10	irgsp1_rep	three_prime_UTR	20185274	20186188	.	-	.	Parent=Os10t0521600-01
Chr10	irgsp1_rep	mRNA	20186050	20189629	.	-	.	ID=Os10t0521600-02;Name=Os10t0521600-02;Locus_id=Os10g0521600;Oryzabase Gene Symbol Synonym(s)=XBOS33;Note=Similar to Ankyrin-1 (Erythrocyte ankyrin).;Transcript_evidence=AK063580 (DDBJ%2C Best hit);ORF_evidence=B6SWT5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=001-117-H07;Oryzabase=11147;Expression=AK063580;TENOR=Os10t0521600-02;KEGG=Os10t0521600-02
Chr10	irgsp1_rep	five_prime_UTR	20189423	20189629	.	-	.	Parent=Os10t0521600-02
Chr10	irgsp1_rep	CDS	20189246	20189422	.	-	0	Parent=Os10t0521600-02
Chr10	irgsp1_rep	CDS	20189056	20189115	.	-	0	Parent=Os10t0521600-02
Chr10	irgsp1_rep	CDS	20188607	20188678	.	-	0	Parent=Os10t0521600-02
Chr10	irgsp1_rep	CDS	20188304	20188512	.	-	0	Parent=Os10t0521600-02
Chr10	irgsp1_rep	CDS	20188052	20188216	.	-	1	Parent=Os10t0521600-02
Chr10	irgsp1_rep	CDS	20187914	20187959	.	-	1	Parent=Os10t0521600-02
Chr10	irgsp1_rep	three_prime_UTR	20187904	20187913	.	-	.	Parent=Os10t0521600-02
Chr10	irgsp1_rep	three_prime_UTR	20187738	20187784	.	-	.	Parent=Os10t0521600-02
Chr10	irgsp1_rep	three_prime_UTR	20186835	20187618	.	-	.	Parent=Os10t0521600-02
Chr10	irgsp1_rep	three_prime_UTR	20186050	20186188	.	-	.	Parent=Os10t0521600-02
Chr10	irgsp1_rep	mRNA	20196610	20201299	.	-	.	ID=Os10t0521700-01;Name=Os10t0521700-01;Locus_id=Os10g0521700;Oryzabase Gene Symbol Synonym(s)=OsSK31/OsGSK9%2C OsSK31%2C OsGSK9%2C SK31%2C GSK9;Oryzabase Gene Name Synonym(s)=GSK3/SHAGGY-Like Kinase 31%2C GSK3-like Kinase 9;Note=Similar to Shaggy-related protein kinase NtK-1 (EC 2.7.1.-).;Transcript_evidence=AK072390 (DDBJ%2C Best hit);ORF_evidence=A6YP74 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023081B07;Oryzabase=21972;Expression=AK072390;TENOR=Os10t0521700-01;KEGG=Os10t0521700-01 (EC:2.7.11.26)
Chr10	irgsp1_rep	five_prime_UTR	20201063	20201299	.	-	.	Parent=Os10t0521700-01
Chr10	irgsp1_rep	CDS	20201003	20201062	.	-	0	Parent=Os10t0521700-01
Chr10	irgsp1_rep	CDS	20199863	20200117	.	-	0	Parent=Os10t0521700-01
Chr10	irgsp1_rep	CDS	20199684	20199776	.	-	0	Parent=Os10t0521700-01
Chr10	irgsp1_rep	CDS	20199285	20199344	.	-	0	Parent=Os10t0521700-01
Chr10	irgsp1_rep	CDS	20198908	20199180	.	-	0	Parent=Os10t0521700-01
Chr10	irgsp1_rep	CDS	20198730	20198804	.	-	0	Parent=Os10t0521700-01
Chr10	irgsp1_rep	CDS	20198429	20198485	.	-	0	Parent=Os10t0521700-01
Chr10	irgsp1_rep	CDS	20198214	20198354	.	-	0	Parent=Os10t0521700-01
Chr10	irgsp1_rep	CDS	20197906	20197956	.	-	0	Parent=Os10t0521700-01
Chr10	irgsp1_rep	CDS	20197728	20197823	.	-	0	Parent=Os10t0521700-01
Chr10	irgsp1_rep	CDS	20197568	20197651	.	-	0	Parent=Os10t0521700-01
Chr10	irgsp1_rep	CDS	20197242	20197344	.	-	0	Parent=Os10t0521700-01
Chr10	irgsp1_rep	CDS	20197093	20197154	.	-	2	Parent=Os10t0521700-01
Chr10	irgsp1_rep	three_prime_UTR	20196610	20197092	.	-	.	Parent=Os10t0521700-01
Chr10	irgsp1_rep	mRNA	20199064	20201203	.	+	.	ID=Os10t0521801-00;Name=Os10t0521801-00;Locus_id=Os10g0521801;Note=Hypothetical gene.;Transcript_evidence=BT086878 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0521801-00
Chr10	irgsp1_rep	five_prime_UTR	20199064	20199186	.	+	.	Parent=Os10t0521801-00
Chr10	irgsp1_rep	five_prime_UTR	20199634	20199775	.	+	.	Parent=Os10t0521801-00
Chr10	irgsp1_rep	five_prime_UTR	20199862	20200045	.	+	.	Parent=Os10t0521801-00
Chr10	irgsp1_rep	CDS	20200046	20200116	.	+	0	Parent=Os10t0521801-00
Chr10	irgsp1_rep	CDS	20201002	20201203	.	+	1	Parent=Os10t0521801-00
Chr10	irgsp1_rep	mRNA	20207343	20209484	.	+	.	ID=Os10t0521900-01;Name=Os10t0521900-01;Locus_id=Os10g0521900;Oryzabase Gene Symbol Synonym(s)=OsRhmbd17%2C RHMBD17;Oryzabase Gene Name Synonym(s)=Rhomboid 17%2C RHOMBOID 17;Note=Similar to Membrane protein.;Transcript_evidence=AK061038 (DDBJ%2C Best hit);ORF_evidence=B6U8Q7 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Cellular Component: integral to membrane (GO:0016021),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S54%2C rhomboid (IPR002610),Peptidase S54%2C rhomboid domain (IPR022764);NIAS_FLcDNA=006-205-C01;Oryzabase=20073;TENOR=Os10t0521900-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	20207343	20207448	.	+	.	Parent=Os10t0521900-01
Chr10	irgsp1_rep	CDS	20207449	20207753	.	+	0	Parent=Os10t0521900-01
Chr10	irgsp1_rep	CDS	20207852	20208015	.	+	1	Parent=Os10t0521900-01
Chr10	irgsp1_rep	CDS	20208122	20208285	.	+	2	Parent=Os10t0521900-01
Chr10	irgsp1_rep	CDS	20208422	20208675	.	+	0	Parent=Os10t0521900-01
Chr10	irgsp1_rep	CDS	20209237	20209348	.	+	1	Parent=Os10t0521900-01
Chr10	irgsp1_rep	three_prime_UTR	20209349	20209484	.	+	.	Parent=Os10t0521900-01
Chr10	irgsp1_rep	mRNA	20210994	20214302	.	-	.	ID=Os10t0522000-01;Name=Os10t0522000-01;Locus_id=Os10g0522000;Note=Similar to Methyltransferase family protein%2C expressed.;Transcript_evidence=AK240845 (DDBJ%2C Best hit);ORF_evidence=A2Z9G2 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Protein of unknown function DUF248%2C methyltransferase putative (IPR004159);NIAS_FLcDNA=J065019G08;TENOR=Os10t0522000-01;KEGG=Os10t0522000-01
Chr10	irgsp1_rep	five_prime_UTR	20214247	20214302	.	-	.	Parent=Os10t0522000-01
Chr10	irgsp1_rep	CDS	20214151	20214246	.	-	0	Parent=Os10t0522000-01
Chr10	irgsp1_rep	CDS	20213642	20213881	.	-	0	Parent=Os10t0522000-01
Chr10	irgsp1_rep	CDS	20212425	20212656	.	-	0	Parent=Os10t0522000-01
Chr10	irgsp1_rep	CDS	20212086	20212331	.	-	2	Parent=Os10t0522000-01
Chr10	irgsp1_rep	CDS	20211829	20212010	.	-	2	Parent=Os10t0522000-01
Chr10	irgsp1_rep	three_prime_UTR	20211681	20211828	.	-	.	Parent=Os10t0522000-01
Chr10	irgsp1_rep	three_prime_UTR	20211500	20211577	.	-	.	Parent=Os10t0522000-01
Chr10	irgsp1_rep	three_prime_UTR	20210994	20211389	.	-	.	Parent=Os10t0522000-01
Chr10	irgsp1_rep	mRNA	20212100	20214072	.	+	.	ID=Os10t0522200-00;Name=Os10t0522200-00;Locus_id=Os10g0522200;Note=Hypothetical protein.;Transcript_evidence=BT086224 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0522200-00
Chr10	irgsp1_rep	five_prime_UTR	20212100	20212211	.	+	.	Parent=Os10t0522200-00
Chr10	irgsp1_rep	CDS	20212212	20212613	.	+	0	Parent=Os10t0522200-00
Chr10	irgsp1_rep	three_prime_UTR	20212614	20212659	.	+	.	Parent=Os10t0522200-00
Chr10	irgsp1_rep	three_prime_UTR	20213619	20214072	.	+	.	Parent=Os10t0522200-00
Chr10	irgsp1_rep	mRNA	20252191	20253575	.	+	.	ID=Os10t0522400-01;Name=Os10t0522400-01;Locus_id=Os10g0522400;Oryzabase Gene Symbol Synonym(s)=OsFbox560%2C Os_F0582;Oryzabase Gene Name Synonym(s)=F-box protein 560;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK071847 (DDBJ%2C Best hit);ORF_evidence=NP_001149956.1 (RefSeq);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023120I24;Oryzabase=17329;Expression=AK071847;TENOR=Os10t0522400-01;KEGG=Os10t0522400-01
Chr10	irgsp1_rep	five_prime_UTR	20252191	20252408	.	+	.	Parent=Os10t0522400-01
Chr10	irgsp1_rep	CDS	20252409	20252783	.	+	0	Parent=Os10t0522400-01
Chr10	irgsp1_rep	CDS	20253177	20253299	.	+	0	Parent=Os10t0522400-01
Chr10	irgsp1_rep	three_prime_UTR	20253300	20253575	.	+	.	Parent=Os10t0522400-01
Chr10	irgsp1_rep	mRNA	20257014	20262764	.	+	.	ID=Os10t0522500-01;Name=Os10t0522500-01;Locus_id=Os10g0522500;Note=Conserved hypothetical protein.;Transcript_evidence=AK072155 (DDBJ%2C Best hit);ORF_evidence=Q336Z6 (UniProt);NIAS_FLcDNA=J013132P19;TENOR=Os10t0522500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	20257014	20257047	.	+	.	Parent=Os10t0522500-01
Chr10	irgsp1_rep	CDS	20257048	20257246	.	+	0	Parent=Os10t0522500-01
Chr10	irgsp1_rep	CDS	20257330	20257443	.	+	2	Parent=Os10t0522500-01
Chr10	irgsp1_rep	CDS	20257514	20257585	.	+	2	Parent=Os10t0522500-01
Chr10	irgsp1_rep	CDS	20257694	20257710	.	+	2	Parent=Os10t0522500-01
Chr10	irgsp1_rep	three_prime_UTR	20257711	20259363	.	+	.	Parent=Os10t0522500-01
Chr10	irgsp1_rep	three_prime_UTR	20259842	20260054	.	+	.	Parent=Os10t0522500-01
Chr10	irgsp1_rep	three_prime_UTR	20261167	20261362	.	+	.	Parent=Os10t0522500-01
Chr10	irgsp1_rep	three_prime_UTR	20262202	20262764	.	+	.	Parent=Os10t0522500-01
Chr10	irgsp1_rep	mRNA	20257020	20259561	.	+	.	ID=Os10t0522500-02;Name=Os10t0522500-02;Locus_id=Os10g0522500;Note=Similar to predicted protein.;Transcript_evidence=AK062345 (DDBJ%2C Best hit);ORF_evidence=Q336Z6 (UniProt);InterPro=Protein of unknown function DUF2930 (IPR021325);NIAS_FLcDNA=001-101-F07;Expression=AK062345;TENOR=Os10t0522500-02;KEGG=Os10t0522500-02
Chr10	irgsp1_rep	five_prime_UTR	20257020	20257047	.	+	.	Parent=Os10t0522500-02
Chr10	irgsp1_rep	CDS	20257048	20257246	.	+	0	Parent=Os10t0522500-02
Chr10	irgsp1_rep	CDS	20257330	20257439	.	+	2	Parent=Os10t0522500-02
Chr10	irgsp1_rep	CDS	20257514	20257585	.	+	0	Parent=Os10t0522500-02
Chr10	irgsp1_rep	CDS	20257694	20257837	.	+	0	Parent=Os10t0522500-02
Chr10	irgsp1_rep	CDS	20259194	20259199	.	+	0	Parent=Os10t0522500-02
Chr10	irgsp1_rep	three_prime_UTR	20259200	20259561	.	+	.	Parent=Os10t0522500-02
Chr10	irgsp1_rep	mRNA	20263310	20267568	.	+	.	ID=Os10t0522601-01;Name=Os10t0522601-01;Locus_id=Os10g0522601;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK288452 (DDBJ%2C Best hit);ORF_evidence=Q336Z5 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J090034P18;TENOR=Os10t0522601-01;KEGG=Os10t0522601-01
Chr10	irgsp1_rep	five_prime_UTR	20263310	20263393	.	+	.	Parent=Os10t0522601-01
Chr10	irgsp1_rep	five_prime_UTR	20263496	20263621	.	+	.	Parent=Os10t0522601-01
Chr10	irgsp1_rep	five_prime_UTR	20265644	20265678	.	+	.	Parent=Os10t0522601-01
Chr10	irgsp1_rep	CDS	20265679	20267361	.	+	0	Parent=Os10t0522601-01
Chr10	irgsp1_rep	three_prime_UTR	20267362	20267568	.	+	.	Parent=Os10t0522601-01
Chr10	irgsp1_rep	mRNA	20271867	20272423	.	-	.	ID=Os10t0522700-01;Name=Os10t0522700-01;Locus_id=Os10g0522700;Note=Conserved hypothetical protein.;Transcript_evidence=AK068326 (DDBJ%2C Best hit);ORF_evidence=Q7G256 (UniProt);NIAS_FLcDNA=J013139O05;Expression=AK068326;TENOR=Os10t0522700-01;KEGG=Os10t0522700-01
Chr10	irgsp1_rep	five_prime_UTR	20272356	20272423	.	-	.	Parent=Os10t0522700-01
Chr10	irgsp1_rep	CDS	20272170	20272355	.	-	0	Parent=Os10t0522700-01
Chr10	irgsp1_rep	three_prime_UTR	20271867	20272169	.	-	.	Parent=Os10t0522700-01
Chr10	irgsp1_rep	mRNA	20278007	20278573	.	-	.	ID=Os10t0522800-01;Name=Os10t0522800-01;Locus_id=Os10g0522800;Note=Conserved hypothetical protein.;Transcript_evidence=AK072776 (DDBJ%2C Best hit);ORF_evidence=Q7G255 (UniProt);NIAS_FLcDNA=J023137P05;Expression=AK072776;TENOR=Os10t0522800-01;KEGG=Os10t0522800-01
Chr10	irgsp1_rep	five_prime_UTR	20278486	20278573	.	-	.	Parent=Os10t0522800-01
Chr10	irgsp1_rep	CDS	20278294	20278485	.	-	0	Parent=Os10t0522800-01
Chr10	irgsp1_rep	three_prime_UTR	20278007	20278293	.	-	.	Parent=Os10t0522800-01
Chr10	irgsp1_rep	mRNA	20281431	20285006	.	+	.	ID=Os10t0522900-01;Name=Os10t0522900-01;Locus_id=Os10g0522900;Note=Isopenicillin N synthase family protein.;Transcript_evidence=AK068314 (DDBJ%2C Best hit);ORF_evidence=Q109D6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Isopenicillin N synthase (IPR002283),Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=J013151N02;Expression=AK068314;TENOR=Os10t0522900-01;KEGG=Os10t0522900-01
Chr10	irgsp1_rep	five_prime_UTR	20281431	20281512	.	+	.	Parent=Os10t0522900-01
Chr10	irgsp1_rep	CDS	20281513	20281605	.	+	0	Parent=Os10t0522900-01
Chr10	irgsp1_rep	CDS	20281716	20281908	.	+	0	Parent=Os10t0522900-01
Chr10	irgsp1_rep	CDS	20282398	20282476	.	+	2	Parent=Os10t0522900-01
Chr10	irgsp1_rep	CDS	20282552	20282605	.	+	1	Parent=Os10t0522900-01
Chr10	irgsp1_rep	CDS	20282774	20282877	.	+	1	Parent=Os10t0522900-01
Chr10	irgsp1_rep	CDS	20283060	20283160	.	+	2	Parent=Os10t0522900-01
Chr10	irgsp1_rep	CDS	20283398	20283456	.	+	0	Parent=Os10t0522900-01
Chr10	irgsp1_rep	CDS	20283709	20283765	.	+	1	Parent=Os10t0522900-01
Chr10	irgsp1_rep	CDS	20284117	20284162	.	+	1	Parent=Os10t0522900-01
Chr10	irgsp1_rep	CDS	20284360	20284439	.	+	0	Parent=Os10t0522900-01
Chr10	irgsp1_rep	CDS	20284522	20284582	.	+	1	Parent=Os10t0522900-01
Chr10	irgsp1_rep	three_prime_UTR	20284583	20285006	.	+	.	Parent=Os10t0522900-01
Chr10	irgsp1_rep	mRNA	20282552	20284770	.	+	.	ID=Os10t0522900-02;Name=Os10t0522900-02;Locus_id=Os10g0522900;Note=Similar to Oxidoreductase%2C 2OG-Fe oxygenase family protein%2C expressed.;Transcript_evidence=AK062244 (DDBJ%2C Best hit);ORF_evidence=Q109D6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Isopenicillin N synthase (IPR002283),Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=001-047-F02;Expression=AK062244;TENOR=Os10t0522900-02;KEGG=Os10t0522900-02
Chr10	irgsp1_rep	five_prime_UTR	20282552	20282552	.	+	.	Parent=Os10t0522900-02
Chr10	irgsp1_rep	CDS	20282553	20282605	.	+	0	Parent=Os10t0522900-02
Chr10	irgsp1_rep	CDS	20282774	20282877	.	+	1	Parent=Os10t0522900-02
Chr10	irgsp1_rep	CDS	20283060	20283160	.	+	2	Parent=Os10t0522900-02
Chr10	irgsp1_rep	CDS	20283398	20283456	.	+	0	Parent=Os10t0522900-02
Chr10	irgsp1_rep	CDS	20283709	20283765	.	+	1	Parent=Os10t0522900-02
Chr10	irgsp1_rep	CDS	20284117	20284162	.	+	1	Parent=Os10t0522900-02
Chr10	irgsp1_rep	CDS	20284360	20284458	.	+	0	Parent=Os10t0522900-02
Chr10	irgsp1_rep	three_prime_UTR	20284459	20284770	.	+	.	Parent=Os10t0522900-02
Chr10	irgsp1_rep	mRNA	20292773	20293968	.	-	.	ID=Os10t0523000-01;Name=Os10t0523000-01;Locus_id=Os10g0523000;Note=Hypothetical protein.;Transcript_evidence=AK069167 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023009D19;Expression=AK069167;TENOR=Os10t0523000-01;KEGG=Os10t0523000-01
Chr10	irgsp1_rep	five_prime_UTR	20293712	20293968	.	-	.	Parent=Os10t0523000-01
Chr10	irgsp1_rep	CDS	20293262	20293711	.	-	0	Parent=Os10t0523000-01
Chr10	irgsp1_rep	three_prime_UTR	20292773	20293261	.	-	.	Parent=Os10t0523000-01
Chr10	irgsp1_rep	mRNA	20295334	20299457	.	+	.	ID=Os10t0523100-01;Name=Os10t0523100-01;Locus_id=Os10g0523100;CGSNL Gene Symbol=2ODD9;CGSNL Gene Name=2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 9;Oryzabase Gene Symbol Synonym(s)=2-ODD9%2C Os2-ODD9%2C Os2ODD9;Oryzabase Gene Name Synonym(s)=2-oxoglutarate-dependent dioxygenase 9;Note=Isopenicillin N synthase family protein.;Transcript_evidence=AK069466 (DDBJ%2C Best hit);ORF_evidence=Q109D6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Isopenicillin N synthase (IPR002283),Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=J023024I15;Oryzabase=22616;Expression=AK069466;TENOR=Os10t0523100-01;KEGG=Os10t0523100-01
Chr10	irgsp1_rep	five_prime_UTR	20295334	20295399	.	+	.	Parent=Os10t0523100-01
Chr10	irgsp1_rep	CDS	20295400	20295495	.	+	0	Parent=Os10t0523100-01
Chr10	irgsp1_rep	CDS	20295619	20295814	.	+	0	Parent=Os10t0523100-01
Chr10	irgsp1_rep	CDS	20296292	20296372	.	+	2	Parent=Os10t0523100-01
Chr10	irgsp1_rep	CDS	20296438	20296489	.	+	2	Parent=Os10t0523100-01
Chr10	irgsp1_rep	CDS	20296624	20296745	.	+	1	Parent=Os10t0523100-01
Chr10	irgsp1_rep	CDS	20297550	20297650	.	+	2	Parent=Os10t0523100-01
Chr10	irgsp1_rep	CDS	20297823	20297881	.	+	0	Parent=Os10t0523100-01
Chr10	irgsp1_rep	CDS	20297980	20298036	.	+	1	Parent=Os10t0523100-01
Chr10	irgsp1_rep	CDS	20298400	20298445	.	+	1	Parent=Os10t0523100-01
Chr10	irgsp1_rep	CDS	20298679	20298758	.	+	0	Parent=Os10t0523100-01
Chr10	irgsp1_rep	CDS	20298848	20298908	.	+	1	Parent=Os10t0523100-01
Chr10	irgsp1_rep	three_prime_UTR	20298909	20298926	.	+	.	Parent=Os10t0523100-01
Chr10	irgsp1_rep	three_prime_UTR	20299155	20299457	.	+	.	Parent=Os10t0523100-01
Chr10	irgsp1_rep	mRNA	20295357	20299451	.	+	.	ID=Os10t0523100-02;Name=Os10t0523100-02;Locus_id=Os10g0523100;CGSNL Gene Symbol=2ODD9;CGSNL Gene Name=2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 9;Oryzabase Gene Symbol Synonym(s)=2-ODD9%2C Os2-ODD9%2C Os2ODD9;Oryzabase Gene Name Synonym(s)=2-oxoglutarate-dependent dioxygenase 9;Note=Isopenicillin N synthase family protein.;Transcript_evidence=AK104871 (DDBJ%2C Best hit);ORF_evidence=Q109D6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Isopenicillin N synthase (IPR002283),Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=001-044-B11;Oryzabase=22616;Expression=AK104871;TENOR=Os10t0523100-02;KEGG=Os10t0523100-02
Chr10	irgsp1_rep	five_prime_UTR	20295357	20295399	.	+	.	Parent=Os10t0523100-02
Chr10	irgsp1_rep	CDS	20295400	20295495	.	+	0	Parent=Os10t0523100-02
Chr10	irgsp1_rep	CDS	20295619	20295814	.	+	0	Parent=Os10t0523100-02
Chr10	irgsp1_rep	CDS	20296292	20296372	.	+	2	Parent=Os10t0523100-02
Chr10	irgsp1_rep	CDS	20296438	20296489	.	+	2	Parent=Os10t0523100-02
Chr10	irgsp1_rep	CDS	20296624	20296745	.	+	1	Parent=Os10t0523100-02
Chr10	irgsp1_rep	CDS	20297550	20297650	.	+	2	Parent=Os10t0523100-02
Chr10	irgsp1_rep	CDS	20297823	20297881	.	+	0	Parent=Os10t0523100-02
Chr10	irgsp1_rep	CDS	20297980	20298036	.	+	1	Parent=Os10t0523100-02
Chr10	irgsp1_rep	CDS	20298400	20298445	.	+	1	Parent=Os10t0523100-02
Chr10	irgsp1_rep	CDS	20298679	20298758	.	+	0	Parent=Os10t0523100-02
Chr10	irgsp1_rep	CDS	20298848	20298908	.	+	1	Parent=Os10t0523100-02
Chr10	irgsp1_rep	three_prime_UTR	20298909	20298926	.	+	.	Parent=Os10t0523100-02
Chr10	irgsp1_rep	three_prime_UTR	20299155	20299451	.	+	.	Parent=Os10t0523100-02
Chr10	irgsp1_rep	mRNA	20307523	20308904	.	-	.	ID=Os10t0523201-00;Name=Os10t0523201-00;Locus_id=Os10g0523201;Note=Hypothetical protein.;Transcript_evidence=AK362314 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0523201-00
Chr10	irgsp1_rep	five_prime_UTR	20308904	20308904	.	-	.	Parent=Os10t0523201-00
Chr10	irgsp1_rep	CDS	20307548	20308903	.	-	0	Parent=Os10t0523201-00
Chr10	irgsp1_rep	three_prime_UTR	20307523	20307547	.	-	.	Parent=Os10t0523201-00
Chr10	irgsp1_rep	mRNA	20345304	20347002	.	-	.	ID=Os10t0523700-01;Name=Os10t0523700-01;Locus_id=Os10g0523700;Oryzabase Gene Symbol Synonym(s)=ADT;Oryzabase Gene Name Synonym(s)=arogenate dehydratase;Note=Prephenate dehydratase domain containing protein.;Transcript_evidence=AK099858 (DDBJ%2C Best hit);ORF_evidence=NP_001152184.1 (RefSeq);GO=Biological Process: L-phenylalanine biosynthetic process (GO:0009094),Molecular Function: prephenate dehydratase activity (GO:0004664);InterPro=Prephenate dehydratase (IPR001086),Prephenate dehydratase%2C conserved site (IPR018528);NIAS_FLcDNA=J013110M24;Oryzabase=16774;Expression=AK099858;TENOR=Os10t0523700-01;KEGG=Os10t0523700-01
Chr10	irgsp1_rep	five_prime_UTR	20346885	20347002	.	-	.	Parent=Os10t0523700-01
Chr10	irgsp1_rep	CDS	20345658	20346884	.	-	0	Parent=Os10t0523700-01
Chr10	irgsp1_rep	three_prime_UTR	20345304	20345657	.	-	.	Parent=Os10t0523700-01
Chr10	irgsp1_rep	mRNA	20355076	20355657	.	+	.	ID=Os10t0523900-00;Name=Os10t0523900-00;Locus_id=Os10g0523900;CGSNL Gene Symbol=ERF18;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 18;Oryzabase Gene Symbol Synonym(s)=OsERF#018%2C OsERF018%2C OsERF18%2C AP2/EREBP#115%2C AP2/EREBP115;Oryzabase Gene Name Synonym(s)=ethylene response factor 18%2C APETALA2/ethylene-responsive element binding protein 115;Note=Similar to AP2 domain containing protein.;Transcript_evidence=EU972196 (DDBJ);ORF_evidence=Q8H099 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);Oryzabase=10542;TENOR=Os10t0523900-00
Chr10	irgsp1_rep	CDS	20355076	20355657	.	+	0	Parent=Os10t0523900-00
Chr10	irgsp1_rep	mRNA	20361109	20365154	.	+	.	ID=Os10t0524000-01;Name=Os10t0524000-01;Locus_id=Os10g0524000;Note=Conserved hypothetical protein.;Transcript_evidence=AK106233 (DDBJ%2C Best hit);ORF_evidence=Q7G241 (UniProt);NIAS_FLcDNA=002-100-B08;Expression=AK106233;TENOR=Os10t0524000-01;KEGG=Os10t0524000-01
Chr10	irgsp1_rep	five_prime_UTR	20361109	20361276	.	+	.	Parent=Os10t0524000-01
Chr10	irgsp1_rep	CDS	20361277	20361780	.	+	0	Parent=Os10t0524000-01
Chr10	irgsp1_rep	CDS	20362943	20363135	.	+	0	Parent=Os10t0524000-01
Chr10	irgsp1_rep	CDS	20364310	20364813	.	+	2	Parent=Os10t0524000-01
Chr10	irgsp1_rep	CDS	20364857	20364900	.	+	2	Parent=Os10t0524000-01
Chr10	irgsp1_rep	three_prime_UTR	20364901	20365154	.	+	.	Parent=Os10t0524000-01
Chr10	irgsp1_rep	mRNA	20365378	20368269	.	-	.	ID=Os10t0524100-01;Name=Os10t0524100-01;Locus_id=Os10g0524100;Note=Per1-like family protein.;Transcript_evidence=AK073567 (DDBJ%2C Best hit);ORF_evidence=NP_001147973.1 (RefSeq);InterPro=Per1-like (IPR007217);NIAS_FLcDNA=J033041C15;Expression=AK073567;TENOR=Os10t0524100-01;KEGG=Os10t0524100-01
Chr10	irgsp1_rep	five_prime_UTR	20367932	20368269	.	-	.	Parent=Os10t0524100-01
Chr10	irgsp1_rep	CDS	20367825	20367931	.	-	0	Parent=Os10t0524100-01
Chr10	irgsp1_rep	CDS	20366972	20367233	.	-	1	Parent=Os10t0524100-01
Chr10	irgsp1_rep	CDS	20366640	20366839	.	-	0	Parent=Os10t0524100-01
Chr10	irgsp1_rep	CDS	20366365	20366552	.	-	1	Parent=Os10t0524100-01
Chr10	irgsp1_rep	CDS	20365654	20365940	.	-	2	Parent=Os10t0524100-01
Chr10	irgsp1_rep	three_prime_UTR	20365378	20365653	.	-	.	Parent=Os10t0524100-01
Chr10	irgsp1_rep	mRNA	20374252	20375187	.	+	.	ID=Os10t0524300-01;Name=Os10t0524300-01;Locus_id=Os10g0524300;RAP-DB Gene Symbol Synonym(s)=OsEMSA1;RAP-DB Gene Name Synonym(s)=EMBRYO SAC 1;CGSNL Gene Symbol=EMSA1;CGSNL Gene Name=EMBRYO SAC 1;Oryzabase Gene Symbol Synonym(s)=OsEMSA1;Note=LysM domain-containing protein%2C Embryo sac development;Transcript_evidence=AK063244,KX503265 (LiyuB);ORF_evidence=Q8H095;InterPro=LysM domain superfamily (IPR036779),LysM domain (IPR018392);NIAS_FLcDNA=001-112-G07;Manual Curation=December 14%2C 2017;Literature_PMID=28979272;Oryzabase=22068;Expression=AK063244;TENOR=Os10t0524300-01;KEGG=Os10t0524300-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	20374252	20374300	.	+	.	Parent=Os10t0524300-01
Chr10	irgsp1_rep	CDS	20374301	20374627	.	+	0	Parent=Os10t0524300-01
Chr10	irgsp1_rep	three_prime_UTR	20374628	20375187	.	+	.	Parent=Os10t0524300-01
Chr10	irgsp1_rep	mRNA	20379579	20386096	.	-	.	ID=Os10t0524400-01;Name=Os10t0524400-01;Locus_id=Os10g0524400;RAP-DB Gene Symbol Synonym(s)=OsPLD&beta%3B1;RAP-DB Gene Name Synonym(s)=phospholipase D beta1;CGSNL Gene Symbol=PLDbeta1;CGSNL Gene Name=PHOSPHOLIPASE D beta 1;Oryzabase Gene Symbol Synonym(s)=OsPLDbeta1;Oryzabase Gene Name Synonym(s)=phospholipase Dbeta1;Note=Phospholipase D%2C Negative regulation of defense responses and disease resistance;Transcript_evidence=AK121075;ORF_evidence=Q8H093;GO=Molecular Function: catalytic activity (GO:0003824);InterPro=C2 domain superfamily (IPR035892),C2 domain (IPR000008),Phospholipase D/Transphosphatidylase (IPR001736),Phospholipase D%2C C-terminal (IPR024632);NIAS_FLcDNA=J023061O15;Manual Curation=June 23%2C 2020;Literature_PMID=19286937;Oryzabase=8695;Expression=AK121075;TENOR=Os10t0524400-01;KEGG=Os10t0524400-01 (EC:3.1.4.4)
Chr10	irgsp1_rep	five_prime_UTR	20385711	20386096	.	-	.	Parent=Os10t0524400-01
Chr10	irgsp1_rep	CDS	20384151	20385710	.	-	0	Parent=Os10t0524400-01
Chr10	irgsp1_rep	CDS	20383617	20383733	.	-	0	Parent=Os10t0524400-01
Chr10	irgsp1_rep	CDS	20383110	20383304	.	-	0	Parent=Os10t0524400-01
Chr10	irgsp1_rep	CDS	20382644	20382892	.	-	0	Parent=Os10t0524400-01
Chr10	irgsp1_rep	CDS	20382490	20382558	.	-	0	Parent=Os10t0524400-01
Chr10	irgsp1_rep	CDS	20382262	20382409	.	-	0	Parent=Os10t0524400-01
Chr10	irgsp1_rep	CDS	20381936	20382084	.	-	2	Parent=Os10t0524400-01
Chr10	irgsp1_rep	CDS	20381671	20381832	.	-	0	Parent=Os10t0524400-01
Chr10	irgsp1_rep	CDS	20380850	20381047	.	-	0	Parent=Os10t0524400-01
Chr10	irgsp1_rep	CDS	20379950	20380243	.	-	0	Parent=Os10t0524400-01
Chr10	irgsp1_rep	three_prime_UTR	20379579	20379949	.	-	.	Parent=Os10t0524400-01
Chr10	irgsp1_rep	mRNA	20384129	20386085	.	-	.	ID=Os10t0524400-02;Name=Os10t0524400-02;Locus_id=Os10g0524400;CGSNL Gene Symbol=PLDbeta1;CGSNL Gene Name=PHOSPHOLIPASE D beta 1;Oryzabase Gene Symbol Synonym(s)=OsPLDbeta1;Oryzabase Gene Name Synonym(s)=phospholipase Dbeta1;Note=Similar to Phospholipase D.;Transcript_evidence=AK108768 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),Phospholipase D (IPR015679),C2 membrane targeting protein (IPR018029);NIAS_FLcDNA=002-150-H03;Oryzabase=8695;Expression=AK108768;TENOR=Os10t0524400-02;KEGG=Os10t0524400-02 (EC:3.1.4.4)
Chr10	irgsp1_rep	five_prime_UTR	20385711	20386085	.	-	.	Parent=Os10t0524400-02
Chr10	irgsp1_rep	CDS	20384145	20385710	.	-	0	Parent=Os10t0524400-02
Chr10	irgsp1_rep	three_prime_UTR	20384129	20384144	.	-	.	Parent=Os10t0524400-02
Chr10	irgsp1_rep	mRNA	20379931	20386013	.	-	.	ID=Os10t0524400-03;Name=Os10t0524400-03;Locus_id=Os10g0524400;CGSNL Gene Symbol=PLDbeta1;CGSNL Gene Name=PHOSPHOLIPASE D beta 1;Oryzabase Gene Symbol Synonym(s)=OsPLDbeta1;Oryzabase Gene Name Synonym(s)=phospholipase Dbeta1;Note=Similar to Phospholipase D beta 2.;Transcript_evidence=AK073012 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),Phospholipase D/Transphosphatidylase (IPR001736),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),Phospholipase D (IPR015679),C2 membrane targeting protein (IPR018029),Phospholipase D%2C C-terminal (IPR024632);NIAS_FLcDNA=J023150C03;Oryzabase=8695;Expression=AK073012;TENOR=Os10t0524400-03;KEGG=Os10t0524400-03 (EC:3.1.4.4)
Chr10	irgsp1_rep	five_prime_UTR	20385711	20386013	.	-	.	Parent=Os10t0524400-03
Chr10	irgsp1_rep	CDS	20384151	20385710	.	-	0	Parent=Os10t0524400-03
Chr10	irgsp1_rep	CDS	20383617	20383733	.	-	0	Parent=Os10t0524400-03
Chr10	irgsp1_rep	CDS	20383110	20383304	.	-	0	Parent=Os10t0524400-03
Chr10	irgsp1_rep	CDS	20382644	20382892	.	-	0	Parent=Os10t0524400-03
Chr10	irgsp1_rep	CDS	20382490	20382558	.	-	0	Parent=Os10t0524400-03
Chr10	irgsp1_rep	CDS	20382262	20382409	.	-	0	Parent=Os10t0524400-03
Chr10	irgsp1_rep	CDS	20381936	20382084	.	-	2	Parent=Os10t0524400-03
Chr10	irgsp1_rep	CDS	20381671	20381832	.	-	0	Parent=Os10t0524400-03
Chr10	irgsp1_rep	CDS	20380850	20381047	.	-	0	Parent=Os10t0524400-03
Chr10	irgsp1_rep	CDS	20379950	20380243	.	-	0	Parent=Os10t0524400-03
Chr10	irgsp1_rep	three_prime_UTR	20379931	20379949	.	-	.	Parent=Os10t0524400-03
Chr10	irgsp1_rep	mRNA	20377031	20380898	.	-	.	ID=Os10t0524400-04;Name=Os10t0524400-04;Locus_id=Os10g0524400;CGSNL Gene Symbol=PLDbeta1;CGSNL Gene Name=PHOSPHOLIPASE D beta 1;Oryzabase Gene Symbol Synonym(s)=OsPLDbeta1;Oryzabase Gene Name Synonym(s)=phospholipase Dbeta1;Note=Phospholipase D domain containing protein.;Transcript_evidence=AK110268 (DDBJ%2C Best hit);ORF_evidence=GeneMark;InterPro=Phospholipase D (IPR015679),Phospholipase D%2C C-terminal (IPR024632);NIAS_FLcDNA=002-163-C04;Oryzabase=8695;Expression=AK110268;TENOR=Os10t0524400-04;KEGG=Os10t0524400-04 (EC:3.1.4.4)
Chr10	irgsp1_rep	five_prime_UTR	20380850	20380898	.	-	.	Parent=Os10t0524400-04
Chr10	irgsp1_rep	five_prime_UTR	20380229	20380243	.	-	.	Parent=Os10t0524400-04
Chr10	irgsp1_rep	CDS	20379950	20380228	.	-	0	Parent=Os10t0524400-04
Chr10	irgsp1_rep	three_prime_UTR	20379937	20379949	.	-	.	Parent=Os10t0524400-04
Chr10	irgsp1_rep	three_prime_UTR	20377031	20379193	.	-	.	Parent=Os10t0524400-04
Chr10	irgsp1_rep	mRNA	20377272	20379571	.	+	.	ID=Os10t0524500-01;Name=Os10t0524500-01;Locus_id=Os10g0524500;RAP-DB Gene Symbol Synonym(s)=NP1%2C OsNP1;RAP-DB Gene Name Synonym(s)=NO POLLEN 1%2C No Pollen 1;CGSNL Gene Symbol=NP1;CGSNL Gene Name=NO POLLEN 1;Oryzabase Gene Symbol Synonym(s)=OS-ACE%2C OsNP1;Oryzabase Gene Name Synonym(s)=No Pollen 1;Note=Putative glucose-methanol-choline oxidoreductase%2C Regulation of tapetum degeneration and pollen exine formation%2C Anther cuticle formation;Transcript_evidence=AK119563,AK073777,AK101367;ORF_evidence=Q8H094;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Glucose-methanol-choline oxidoreductase (IPR012132),FAD/NAD(P)-binding domain (IPR023753),Glucose-methanol-choline oxidoreductase%2C N-terminal (IPR000172),Glucose-methanol-choline oxidoreductase%2C C-terminal (IPR007867);NIAS_FLcDNA=002-117-A02, J033070C01, J033035L09;Manual Curation=June 2%2C 2017;Literature_PMID=28378445,27864513;Oryzabase=15166;TENOR=Os10t0524500-01
Chr10	irgsp1_rep	five_prime_UTR	20377272	20377303	.	+	.	Parent=Os10t0524500-01
Chr10	irgsp1_rep	CDS	20377304	20377403	.	+	0	Parent=Os10t0524500-01
Chr10	irgsp1_rep	CDS	20377486	20378127	.	+	2	Parent=Os10t0524500-01
Chr10	irgsp1_rep	CDS	20378214	20379189	.	+	2	Parent=Os10t0524500-01
Chr10	irgsp1_rep	CDS	20379278	20379320	.	+	1	Parent=Os10t0524500-01
Chr10	irgsp1_rep	three_prime_UTR	20379321	20379571	.	+	.	Parent=Os10t0524500-01
Chr10	irgsp1_rep	mRNA	20389644	20392184	.	-	.	ID=Os10t0524600-01;Name=Os10t0524600-01;Locus_id=Os10g0524600;Oryzabase Gene Symbol Synonym(s)=OsSub61%2C SUB61;Oryzabase Gene Name Synonym(s)=Subtilisin 61%2C SUBTILISIN 61;Note=Peptidase S8%2C subtilisin-related domain containing protein.;Transcript_evidence=AK069238 (DDBJ%2C Best hit);ORF_evidence=B6SWF4 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: negative regulation of catalytic activity (GO:0043086),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: identical protein binding (GO:0042802);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Protease-associated domain%2C PA (IPR003137),Proteinase inhibitor I9%2C subtilisin propeptide (IPR010259),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C  Asp-active site (IPR023827);NIAS_FLcDNA=J023012B10;Oryzabase=20145;Expression=AK069238;TENOR=Os10t0524600-01;KEGG=Os10t0524600-01
Chr10	irgsp1_rep	five_prime_UTR	20392168	20392184	.	-	.	Parent=Os10t0524600-01
Chr10	irgsp1_rep	CDS	20389888	20392167	.	-	0	Parent=Os10t0524600-01
Chr10	irgsp1_rep	three_prime_UTR	20389644	20389887	.	-	.	Parent=Os10t0524600-01
Chr10	irgsp1_rep	mRNA	20394795	20399286	.	-	.	ID=Os10t0524700-00;Name=Os10t0524700-00;Locus_id=Os10g0524700;Note=CytoChrome P450 family protein.;Transcript_evidence=CT837684 (DDBJ%2C Best hit);ORF_evidence=Q7G234 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);TENOR=Os10t0524700-00;KEGG=Os10t0524700-00
Chr10	irgsp1_rep	five_prime_UTR	20399246	20399286	.	-	.	Parent=Os10t0524700-00
Chr10	irgsp1_rep	CDS	20398925	20399245	.	-	0	Parent=Os10t0524700-00
Chr10	irgsp1_rep	CDS	20396383	20396598	.	-	0	Parent=Os10t0524700-00
Chr10	irgsp1_rep	CDS	20396007	20396288	.	-	0	Parent=Os10t0524700-00
Chr10	irgsp1_rep	CDS	20395565	20395897	.	-	0	Parent=Os10t0524700-00
Chr10	irgsp1_rep	CDS	20395247	20395450	.	-	0	Parent=Os10t0524700-00
Chr10	irgsp1_rep	CDS	20394974	20395153	.	-	0	Parent=Os10t0524700-00
Chr10	irgsp1_rep	three_prime_UTR	20394795	20394973	.	-	.	Parent=Os10t0524700-00
Chr10	irgsp1_rep	mRNA	20396019	20396592	.	+	.	ID=Os10t0524766-00;Name=Os10t0524766-00;Locus_id=Os10g0524766;Note=Hypothetical gene.;Transcript_evidence=EU941347 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0524766-00;KEGG=Os10t0524766-00
Chr10	irgsp1_rep	CDS	20396019	20396268	.	+	0	Parent=Os10t0524766-00
Chr10	irgsp1_rep	CDS	20396364	20396377	.	+	2	Parent=Os10t0524766-00
Chr10	irgsp1_rep	three_prime_UTR	20396378	20396592	.	+	.	Parent=Os10t0524766-00
Chr10	irgsp1_rep	mRNA	20407083	20407914	.	+	.	ID=Os10t0524850-00;Name=Os10t0524850-00;Locus_id=Os10g0524850;Note=Hypothetical conserved gene.;Transcript_evidence=EU967040 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0524850-00;KEGG=Os10t0524850-00
Chr10	irgsp1_rep	five_prime_UTR	20407083	20407189	.	+	.	Parent=Os10t0524850-00
Chr10	irgsp1_rep	CDS	20407190	20407400	.	+	0	Parent=Os10t0524850-00
Chr10	irgsp1_rep	CDS	20407457	20407665	.	+	2	Parent=Os10t0524850-00
Chr10	irgsp1_rep	three_prime_UTR	20407666	20407914	.	+	.	Parent=Os10t0524850-00
Chr10	irgsp1_rep	mRNA	20406448	20408103	.	-	.	ID=Os10t0524900-00;Name=Os10t0524900-00;Locus_id=Os10g0524900;Note=Similar to Thaumatin-like protein.;Transcript_evidence=BT034395 (DDBJ);ORF_evidence=Q9FLU2 (UniProt);InterPro=Thaumatin%2C pathogenesis-related (IPR001938);TENOR=Os10t0524900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	20407419	20408103	.	-	0	Parent=Os10t0524900-00
Chr10	irgsp1_rep	CDS	20406448	20407334	.	-	2	Parent=Os10t0524900-00
Chr10	irgsp1_rep	mRNA	20412047	20416020	.	-	.	ID=Os10t0525000-01;Name=Os10t0525000-01;Locus_id=Os10g0525000;CGSNL Gene Symbol=CYP704A5;CGSNL Gene Name=CYTOCHROME P450 704A5;Oryzabase Gene Symbol Synonym(s)=OsCYP704A5;Oryzabase Gene Name Synonym(s)=CytoChrome P450 704A5;Note=CytoChrome P450 family protein.;Transcript_evidence=AK069358 (DDBJ%2C Best hit),AK099925 (DDBJ%2C Best hit),AK104799 (DDBJ%2C Best hit);ORF_evidence=Q7G234 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);NIAS_FLcDNA=J023012I12,J013116M22,001-040-A06;Oryzabase=21846;TENOR=Os10t0525000-01
Chr10	irgsp1_rep	five_prime_UTR	20415912	20416020	.	-	.	Parent=Os10t0525000-01
Chr10	irgsp1_rep	CDS	20415588	20415911	.	-	0	Parent=Os10t0525000-01
Chr10	irgsp1_rep	CDS	20413735	20413950	.	-	0	Parent=Os10t0525000-01
Chr10	irgsp1_rep	CDS	20413359	20413646	.	-	0	Parent=Os10t0525000-01
Chr10	irgsp1_rep	CDS	20412935	20413270	.	-	0	Parent=Os10t0525000-01
Chr10	irgsp1_rep	CDS	20412616	20412819	.	-	0	Parent=Os10t0525000-01
Chr10	irgsp1_rep	CDS	20412322	20412501	.	-	0	Parent=Os10t0525000-01
Chr10	irgsp1_rep	three_prime_UTR	20412047	20412321	.	-	.	Parent=Os10t0525000-01
Chr10	irgsp1_rep	mRNA	20412047	20413822	.	-	.	ID=Os10t0525000-02;Name=Os10t0525000-02;Locus_id=Os10g0525000;CGSNL Gene Symbol=CYP704A5;CGSNL Gene Name=CYTOCHROME P450 704A5;Oryzabase Gene Symbol Synonym(s)=OsCYP704A5;Oryzabase Gene Name Synonym(s)=CytoChrome P450 704A5;Note=Similar to CytoChrome P450 family protein%2C expressed.;Transcript_evidence=AK105884 (DDBJ%2C Best hit);ORF_evidence=Q109D2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);NIAS_FLcDNA=001-204-D08;Oryzabase=21846;Expression=AK105884;TENOR=Os10t0525000-02;KEGG=Os10t0525000-02
Chr10	irgsp1_rep	five_prime_UTR	20413822	20413822	.	-	.	Parent=Os10t0525000-02
Chr10	irgsp1_rep	CDS	20413735	20413821	.	-	0	Parent=Os10t0525000-02
Chr10	irgsp1_rep	CDS	20413359	20413646	.	-	0	Parent=Os10t0525000-02
Chr10	irgsp1_rep	CDS	20412935	20413270	.	-	0	Parent=Os10t0525000-02
Chr10	irgsp1_rep	CDS	20412616	20412819	.	-	0	Parent=Os10t0525000-02
Chr10	irgsp1_rep	CDS	20412322	20412501	.	-	0	Parent=Os10t0525000-02
Chr10	irgsp1_rep	three_prime_UTR	20412047	20412321	.	-	.	Parent=Os10t0525000-02
Chr10	irgsp1_rep	mRNA	20412933	20413944	.	+	.	ID=Os10t0525101-00;Name=Os10t0525101-00;Locus_id=Os10g0525101;Note=Hypothetical gene.;Transcript_evidence=BT065154 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0525101-00;KEGG=Os10t0525101-00
Chr10	irgsp1_rep	five_prime_UTR	20412933	20413238	.	+	.	Parent=Os10t0525101-00
Chr10	irgsp1_rep	CDS	20413239	20413626	.	+	0	Parent=Os10t0525101-00
Chr10	irgsp1_rep	CDS	20413717	20413730	.	+	2	Parent=Os10t0525101-00
Chr10	irgsp1_rep	three_prime_UTR	20413731	20413944	.	+	.	Parent=Os10t0525101-00
Chr10	irgsp1_rep	mRNA	20426804	20430567	.	-	.	ID=Os10t0525200-01;Name=Os10t0525200-01;Locus_id=Os10g0525200;Note=CytoChrome P450 family protein.;Transcript_evidence=AK287463 (DDBJ%2C Best hit);ORF_evidence=Q7G231 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);NIAS_FLcDNA=J043021C07;TENOR=Os10t0525200-01;KEGG=Os10t0525200-01
Chr10	irgsp1_rep	five_prime_UTR	20430534	20430567	.	-	.	Parent=Os10t0525200-01
Chr10	irgsp1_rep	CDS	20430159	20430533	.	-	0	Parent=Os10t0525200-01
Chr10	irgsp1_rep	CDS	20428370	20428585	.	-	0	Parent=Os10t0525200-01
Chr10	irgsp1_rep	CDS	20427989	20428276	.	-	0	Parent=Os10t0525200-01
Chr10	irgsp1_rep	CDS	20427561	20427896	.	-	0	Parent=Os10t0525200-01
Chr10	irgsp1_rep	CDS	20427251	20427454	.	-	0	Parent=Os10t0525200-01
Chr10	irgsp1_rep	CDS	20426973	20427152	.	-	0	Parent=Os10t0525200-01
Chr10	irgsp1_rep	three_prime_UTR	20426804	20426972	.	-	.	Parent=Os10t0525200-01
Chr10	irgsp1_rep	mRNA	20427557	20428587	.	+	.	ID=Os10t0525301-00;Name=Os10t0525301-00;Locus_id=Os10g0525301;Note=Hypothetical gene.;Transcript_evidence=BT065154 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0525301-00;KEGG=Os10t0525301-00
Chr10	irgsp1_rep	five_prime_UTR	20427557	20427988	.	+	.	Parent=Os10t0525301-00
Chr10	irgsp1_rep	CDS	20427989	20428249	.	+	0	Parent=Os10t0525301-00
Chr10	irgsp1_rep	CDS	20428339	20428374	.	+	0	Parent=Os10t0525301-00
Chr10	irgsp1_rep	three_prime_UTR	20428375	20428587	.	+	.	Parent=Os10t0525301-00
Chr10	irgsp1_rep	mRNA	20432061	20433202	.	-	.	ID=Os10t0525400-01;Name=Os10t0525400-01;Locus_id=Os10g0525400;CGSNL Gene Symbol=GSTU15;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 15;Oryzabase Gene Symbol Synonym(s)=OsGSTU15;Oryzabase Gene Name Synonym(s)=glutathione transferase U15;Note=Similar to Glutathione S-transferase GSTU31 (Fragment).;Transcript_evidence=AK104194 (DDBJ%2C Best hit),AK067309 (DDBJ%2C Best hit),AK104795 (DDBJ%2C Best hit);ORF_evidence=NP_001105629.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=006-303-G04,J013099B17,001-039-H04;Oryzabase=9533;Expression=AK104194;TENOR=Os10t0525400-01;KEGG=Os10t0525400-01
Chr10	irgsp1_rep	five_prime_UTR	20433116	20433202	.	-	.	Parent=Os10t0525400-01
Chr10	irgsp1_rep	CDS	20432759	20433115	.	-	0	Parent=Os10t0525400-01
Chr10	irgsp1_rep	CDS	20432285	20432662	.	-	0	Parent=Os10t0525400-01
Chr10	irgsp1_rep	three_prime_UTR	20432061	20432284	.	-	.	Parent=Os10t0525400-01
Chr10	irgsp1_rep	mRNA	20432064	20432710	.	-	.	ID=Os10t0525400-03;Name=Os10t0525400-03;Locus_id=Os10g0525400;CGSNL Gene Symbol=GSTU15;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 15;Oryzabase Gene Symbol Synonym(s)=OsGSTU15;Oryzabase Gene Name Synonym(s)=glutathione transferase U15;Note=Similar to glutathione S-transferase GST 34.;Transcript_evidence=AK063207 (DDBJ%2C Best hit);ORF_evidence=NP_001105629.1 (RefSeq);InterPro=Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=001-112-D02;Oryzabase=9533;Expression=AK063207;TENOR=Os10t0525400-03;KEGG=Os10t0525400-03
Chr10	irgsp1_rep	five_prime_UTR	20432678	20432710	.	-	.	Parent=Os10t0525400-03
Chr10	irgsp1_rep	CDS	20432285	20432677	.	-	0	Parent=Os10t0525400-03
Chr10	irgsp1_rep	three_prime_UTR	20432064	20432284	.	-	.	Parent=Os10t0525400-03
Chr10	irgsp1_rep	mRNA	20434654	20435650	.	-	.	ID=Os10t0525500-01;Name=Os10t0525500-01;Locus_id=Os10g0525500;CGSNL Gene Symbol=GSTU21;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 21;Oryzabase Gene Symbol Synonym(s)=OsGSTU21;Note=Similar to glutathione transferase31.;Transcript_evidence=AK063104 (DDBJ%2C Best hit);ORF_evidence=NP_001104991.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=001-111-C12;Oryzabase=9538;TENOR=Os10t0525500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	20435584	20435650	.	-	.	Parent=Os10t0525500-01
Chr10	irgsp1_rep	CDS	20435224	20435583	.	-	0	Parent=Os10t0525500-01
Chr10	irgsp1_rep	CDS	20435033	20435107	.	-	0	Parent=Os10t0525500-01
Chr10	irgsp1_rep	three_prime_UTR	20434654	20435032	.	-	.	Parent=Os10t0525500-01
Chr10	irgsp1_rep	mRNA	20449155	20450040	.	-	.	ID=Os10t0525800-00;Name=Os10t0525800-00;Locus_id=Os10g0525800;CGSNL Gene Symbol=GSTU31;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 31;Oryzabase Gene Symbol Synonym(s)=OsGSTU31;Note=Similar to Glutathione S-transferase GSTU31 (Fragment).;Transcript_evidence=AY533124 (DDBJ%2C Best hit);ORF_evidence=Q7XDA6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);Oryzabase=9548;Expression=AY533124;TENOR=Os10t0525800-00;KEGG=Os10t0525800-00
Chr10	irgsp1_rep	CDS	20449807	20450040	.	-	0	Parent=Os10t0525800-00
Chr10	irgsp1_rep	CDS	20449693	20449800	.	-	0	Parent=Os10t0525800-00
Chr10	irgsp1_rep	CDS	20449155	20449466	.	-	0	Parent=Os10t0525800-00
Chr10	irgsp1_rep	mRNA	20488627	20489877	.	+	.	ID=Os10t0527400-01;Name=Os10t0527400-01;Locus_id=Os10g0527400;CGSNL Gene Symbol=GSTU19;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 19;Oryzabase Gene Symbol Synonym(s)=OsGSTU19%2C GSTU6%2C OsGSTU6.1%2C GSTU6.1;Oryzabase Gene Name Synonym(s)=glutathione S-transferase GSTU6%2C glutathione S-transferase GSTU6.16%2C glutathione transferase U19;Note=Similar to Tau class GST protein 3.;Transcript_evidence=AK107435 (DDBJ%2C Best hit);ORF_evidence=Q6WSC2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=002-128-A11;Oryzabase=9536;Expression=AK107435;TENOR=Os10t0527400-01;KEGG=Os10t0527400-01
Chr10	irgsp1_rep	five_prime_UTR	20488627	20488789	.	+	.	Parent=Os10t0527400-01
Chr10	irgsp1_rep	CDS	20488790	20489116	.	+	0	Parent=Os10t0527400-01
Chr10	irgsp1_rep	CDS	20489218	20489610	.	+	0	Parent=Os10t0527400-01
Chr10	irgsp1_rep	three_prime_UTR	20489611	20489877	.	+	.	Parent=Os10t0527400-01
Chr10	irgsp1_rep	mRNA	20493427	20494200	.	+	.	ID=Os10t0527601-00;Name=Os10t0527601-00;Locus_id=Os10g0527601;CGSNL Gene Symbol=GSTU20;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 20;Oryzabase Gene Symbol Synonym(s)=OsGSTU20;Note=Glutathione S-transferase%2C C-terminal-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6WSC2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);Oryzabase=9537;TENOR=Os10t0527601-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	20493427	20494200	.	+	0	Parent=Os10t0527601-00
Chr10	irgsp1_rep	mRNA	20498004	20499096	.	+	.	ID=Os10t0527800-01;Name=Os10t0527800-01;Locus_id=Os10g0527800;RAP-DB Gene Symbol Synonym(s)=OsGSTU12;RAP-DB Gene Name Synonym(s)=glutathione S-transferase U12;CGSNL Gene Symbol=GSTU12;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 12;Oryzabase Gene Symbol Synonym(s)=OsGSTU12%2C OsGSTU6.2%2C GSTU6.2;Oryzabase Gene Name Synonym(s)=Glutathione S-transferase GSTU6.2%2C glutathione transferase U12;Note=Glutathione S-transferase%2C Regulation of leaf senescence;Transcript_evidence=AK063773;ORF_evidence=Q945W6;GO=Molecular Function: protein binding (GO:0005515);InterPro=Thioredoxin-like superfamily (IPR036249),Glutathione S-transferase%2C C-terminal domain superfamily (IPR036282),Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal-like (IPR010987);NIAS_FLcDNA=001-121-C09;Manual Curation=June 9%2C 2020;Literature_PMID=32509751;Oryzabase=9530;Expression=AK063773;TENOR=Os10t0527800-01;KEGG=Os10t0527800-01
Chr10	irgsp1_rep	five_prime_UTR	20498004	20498090	.	+	.	Parent=Os10t0527800-01
Chr10	irgsp1_rep	CDS	20498091	20498417	.	+	0	Parent=Os10t0527800-01
Chr10	irgsp1_rep	CDS	20498524	20498898	.	+	0	Parent=Os10t0527800-01
Chr10	irgsp1_rep	three_prime_UTR	20498899	20499096	.	+	.	Parent=Os10t0527800-01
Chr10	irgsp1_rep	mRNA	20537710	20540484	.	-	.	ID=Os10t0527900-01;Name=Os10t0527900-01;Locus_id=Os10g0527900;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=AK110508 (DDBJ%2C Best hit);ORF_evidence=A2Z9K0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=002-167-F10;Expression=AK110508;TENOR=Os10t0527900-01;KEGG=Os10t0527900-01
Chr10	irgsp1_rep	CDS	20539107	20540484	.	-	0	Parent=Os10t0527900-01
Chr10	irgsp1_rep	CDS	20538181	20539037	.	-	2	Parent=Os10t0527900-01
Chr10	irgsp1_rep	three_prime_UTR	20537710	20538180	.	-	.	Parent=Os10t0527900-01
Chr10	irgsp1_rep	mRNA	20551209	20552361	.	+	.	ID=Os10t0528100-01;Name=Os10t0528100-01;Locus_id=Os10g0528100;CGSNL Gene Symbol=GSTU24;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 24;Oryzabase Gene Symbol Synonym(s)=OsGSTU24;Oryzabase Gene Name Synonym(s)=glutathione transferase U24;Note=Similar to Glutathione S-transferase GST 42 (EC 2.5.1.18) (Fragment).;Transcript_evidence=AK108376 (DDBJ%2C Best hit);ORF_evidence=B6T033 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=002-142-E01;Oryzabase=17961;Expression=AK108376;TENOR=Os10t0528100-01;KEGG=Os10t0528100-01 (EC:2.5.1.18)
Chr10	irgsp1_rep	five_prime_UTR	20551209	20551284	.	+	.	Parent=Os10t0528100-01
Chr10	irgsp1_rep	CDS	20551285	20551611	.	+	0	Parent=Os10t0528100-01
Chr10	irgsp1_rep	CDS	20551699	20552070	.	+	0	Parent=Os10t0528100-01
Chr10	irgsp1_rep	three_prime_UTR	20552071	20552361	.	+	.	Parent=Os10t0528100-01
Chr10	irgsp1_rep	mRNA	20553611	20554584	.	-	.	ID=Os10t0528150-01;Name=Os10t0528150-01;Locus_id=Os10g0528150;Note=Hypothetical protein.;Transcript_evidence=AK241514 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065168O20;TENOR=Os10t0528150-01;KEGG=Os10t0528150-01
Chr10	irgsp1_rep	five_prime_UTR	20554551	20554584	.	-	.	Parent=Os10t0528150-01
Chr10	irgsp1_rep	CDS	20554125	20554550	.	-	0	Parent=Os10t0528150-01
Chr10	irgsp1_rep	three_prime_UTR	20553611	20554124	.	-	.	Parent=Os10t0528150-01
Chr10	irgsp1_rep	mRNA	20553664	20554715	.	+	.	ID=Os10t0528200-01;Name=Os10t0528200-01;Locus_id=Os10g0528200;Oryzabase Gene Symbol Synonym(s)=GST;Oryzabase Gene Name Synonym(s)=Glutathione S-transferase;Note=Similar to Glutathione S-transferase TSI-1 (EC 2.5.1.18) (Glutathione S- transferase 1).;Transcript_evidence=AK241921 (DDBJ%2C Best hit);ORF_evidence=Q6WSC2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=J075074N23;Oryzabase=17960;TENOR=Os10t0528200-01;KEGG=Os10t0528200-01 (EC:2.5.1.18)
Chr10	irgsp1_rep	five_prime_UTR	20553664	20553707	.	+	.	Parent=Os10t0528200-01
Chr10	irgsp1_rep	CDS	20553708	20554034	.	+	0	Parent=Os10t0528200-01
Chr10	irgsp1_rep	CDS	20554162	20554542	.	+	0	Parent=Os10t0528200-01
Chr10	irgsp1_rep	three_prime_UTR	20554543	20554715	.	+	.	Parent=Os10t0528200-01
Chr10	irgsp1_rep	mRNA	20556396	20557613	.	+	.	ID=Os10t0528300-01;Name=Os10t0528300-01;Locus_id=Os10g0528300;CGSNL Gene Symbol=GSTU4;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 4;Oryzabase Gene Symbol Synonym(s)=OsGSTU4;Oryzabase Gene Name Synonym(s)=tau class glutathione S-trasferase 4;Note=Tau class GST protein 4.;Transcript_evidence=AK103453 (DDBJ%2C Best hit);ORF_evidence=Q6WSC3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=J033129I22;Oryzabase=9468;Expression=AK103453;TENOR=Os10t0528300-01;KEGG=Os10t0528300-01
Chr10	irgsp1_rep	five_prime_UTR	20556396	20556474	.	+	.	Parent=Os10t0528300-01
Chr10	irgsp1_rep	CDS	20556475	20556807	.	+	0	Parent=Os10t0528300-01
Chr10	irgsp1_rep	CDS	20557036	20557422	.	+	0	Parent=Os10t0528300-01
Chr10	irgsp1_rep	three_prime_UTR	20557423	20557613	.	+	.	Parent=Os10t0528300-01
Chr10	irgsp1_rep	mRNA	20559589	20560614	.	+	.	ID=Os10t0528400-01;Name=Os10t0528400-01;Locus_id=Os10g0528400;CGSNL Gene Symbol=GSTU3;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 3;Oryzabase Gene Symbol Synonym(s)=OsGSTU3%2C OsGSTU29%2C GSTU29;Oryzabase Gene Name Synonym(s)=tau class glutathione S-trasferase 3%2C tau glutathione S-trasferase 29;Note=Glutathione S-transferase%2C C-terminal-like domain containing protein.;Transcript_evidence=AK061304 (DDBJ%2C Best hit),AK073944 (DDBJ%2C Best hit);ORF_evidence=Q6WSC2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=006-301-H02,J033071L17;Oryzabase=9467;TENOR=Os10t0528400-01
Chr10	irgsp1_rep	five_prime_UTR	20559589	20559655	.	+	.	Parent=Os10t0528400-01
Chr10	irgsp1_rep	CDS	20559656	20559982	.	+	0	Parent=Os10t0528400-01
Chr10	irgsp1_rep	CDS	20560080	20560454	.	+	0	Parent=Os10t0528400-01
Chr10	irgsp1_rep	three_prime_UTR	20560455	20560614	.	+	.	Parent=Os10t0528400-01
Chr10	irgsp1_rep	mRNA	20559641	20560462	.	-	.	ID=Os10t0528651-00;Name=Os10t0528651-00;Locus_id=Os10g0528651;Note=Conserved hypothetical protein.;Transcript_evidence=EU972896 (DDBJ);ORF_evidence=NP_001176248.1 (RefSeq);TENOR=Os10t0528651-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	20559641	20560462	.	-	0	Parent=Os10t0528651-00
Chr10	irgsp1_rep	mRNA	20574829	20576053	.	+	.	ID=Os10t0528900-01;Name=Os10t0528900-01;Locus_id=Os10g0528900;CGSNL Gene Symbol=GSTU14;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 14;Oryzabase Gene Symbol Synonym(s)=OsGSTU14;Note=Similar to Tau class GST protein 3.;Transcript_evidence=AK059726 (DDBJ%2C Best hit);ORF_evidence=Q6WSC2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=006-201-C07;Oryzabase=9532;Expression=AK059726;TENOR=Os10t0528900-01;KEGG=Os10t0528900-01
Chr10	irgsp1_rep	five_prime_UTR	20574829	20574921	.	+	.	Parent=Os10t0528900-01
Chr10	irgsp1_rep	CDS	20574922	20575251	.	+	0	Parent=Os10t0528900-01
Chr10	irgsp1_rep	CDS	20575343	20575708	.	+	0	Parent=Os10t0528900-01
Chr10	irgsp1_rep	three_prime_UTR	20575709	20576053	.	+	.	Parent=Os10t0528900-01
Chr10	irgsp1_rep	mRNA	20589767	20590845	.	+	.	ID=Os10t0529300-01;Name=Os10t0529300-01;Locus_id=Os10g0529300;CGSNL Gene Symbol=GSTU18;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 18;Oryzabase Gene Symbol Synonym(s)=OsGSTU18%2C OsGSTU7%2C GSTU7;Oryzabase Gene Name Synonym(s)=glutathione transferase U7;Note=Similar to Tau class GST protein 3.;Transcript_evidence=AK103309 (DDBJ%2C Best hit),AK059882 (DDBJ%2C Best hit),AK060931 (DDBJ%2C Best hit),AK106212 (DDBJ%2C Best hit);ORF_evidence=Q6WSC2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=J033125G13,006-207-H12,006-201-A11,001-208-G09;Oryzabase=9535;TENOR=Os10t0529300-01
Chr10	irgsp1_rep	five_prime_UTR	20589767	20589828	.	+	.	Parent=Os10t0529300-01
Chr10	irgsp1_rep	CDS	20589829	20590164	.	+	0	Parent=Os10t0529300-01
Chr10	irgsp1_rep	CDS	20590248	20590643	.	+	0	Parent=Os10t0529300-01
Chr10	irgsp1_rep	three_prime_UTR	20590644	20590845	.	+	.	Parent=Os10t0529300-01
Chr10	irgsp1_rep	mRNA	20592565	20593601	.	+	.	ID=Os10t0529400-01;Name=Os10t0529400-01;Locus_id=Os10g0529400;CGSNL Gene Symbol=GSTU9;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 9;Oryzabase Gene Symbol Synonym(s)=OsGSTU9;Note=Similar to Glutathione S-transferase GSTU6.;Transcript_evidence=AK102196 (DDBJ%2C Best hit);ORF_evidence=B6U486 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=J033087D04;Oryzabase=9527;TENOR=Os10t0529400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	20592565	20592643	.	+	.	Parent=Os10t0529400-01
Chr10	irgsp1_rep	CDS	20592644	20592973	.	+	0	Parent=Os10t0529400-01
Chr10	irgsp1_rep	CDS	20593056	20593448	.	+	0	Parent=Os10t0529400-01
Chr10	irgsp1_rep	three_prime_UTR	20593449	20593601	.	+	.	Parent=Os10t0529400-01
Chr10	irgsp1_rep	mRNA	20592635	20593391	.	-	.	ID=Os10t0529450-00;Name=Os10t0529450-00;Locus_id=Os10g0529450;Note=Hypothetical protein.;Transcript_evidence=AK364077 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0529450-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	20593083	20593391	.	-	0	Parent=Os10t0529450-00
Chr10	irgsp1_rep	CDS	20592861	20593001	.	-	0	Parent=Os10t0529450-00
Chr10	irgsp1_rep	three_prime_UTR	20592635	20592860	.	-	.	Parent=Os10t0529450-00
Chr10	irgsp1_rep	mRNA	20595069	20596048	.	+	.	ID=Os10t0529500-01;Name=Os10t0529500-01;Locus_id=Os10g0529500;RAP-DB Gene Symbol Synonym(s)=OsGSTU30;RAP-DB Gene Name Synonym(s)=tau class glutathione S-transferase 30;CGSNL Gene Symbol=GSTU30;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 30;Oryzabase Gene Symbol Synonym(s)=OsGSTU30;Note=Tau class glutathione S-transferase%2C Heavy metal and drought stress tolerance;Transcript_evidence=AK243411;ORF_evidence=Q8S710;GO=Molecular Function: protein binding (GO:0005515);InterPro=Thioredoxin-like superfamily (IPR036249),Glutathione S-transferase%2C C-terminal domain superfamily (IPR036282),Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal-like (IPR010987);NIAS_FLcDNA=J100065O13;Manual Curation=December 7%2C 2018;Literature_PMID=30516767;Oryzabase=9547;TENOR=Os10t0529500-01;KEGG=Os10t0529500-01 (EC:2.5.1.18)
Chr10	irgsp1_rep	five_prime_UTR	20595069	20595104	.	+	.	Parent=Os10t0529500-01
Chr10	irgsp1_rep	CDS	20595105	20595437	.	+	0	Parent=Os10t0529500-01
Chr10	irgsp1_rep	CDS	20595552	20595935	.	+	0	Parent=Os10t0529500-01
Chr10	irgsp1_rep	three_prime_UTR	20595936	20596048	.	+	.	Parent=Os10t0529500-01
Chr10	irgsp1_rep	mRNA	20597016	20599106	.	-	.	ID=Os10t0529600-01;Name=Os10t0529600-01;Locus_id=Os10g0529600;Note=Hypothetical protein.;Transcript_evidence=AK107092 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-121-H02;TENOR=Os10t0529600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	20597621	20599106	.	-	.	Parent=Os10t0529600-01
Chr10	irgsp1_rep	CDS	20597016	20597620	.	-	0	Parent=Os10t0529600-01
Chr10	irgsp1_rep	mRNA	20597074	20598092	.	+	.	ID=Os10t0529700-01;Name=Os10t0529700-01;Locus_id=Os10g0529700;CGSNL Gene Symbol=GSTU8;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 8;Oryzabase Gene Symbol Synonym(s)=OsGSTU8%2C OsGST35%2C GST35;Oryzabase Gene Name Synonym(s)=Glutathione S-transferase 35;Note=Similar to glutathione transferase35.;Transcript_evidence=AK064635 (DDBJ%2C Best hit),AK064620 (DDBJ%2C Best hit);ORF_evidence=NP_001105511.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=002-114-A04,002-113-D07;Oryzabase=9526;Expression=AK064635;TENOR=Os10t0529700-01;KEGG=Os10t0529700-01 (EC:2.5.1.18);B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	20597074	20597140	.	+	.	Parent=Os10t0529700-01
Chr10	irgsp1_rep	CDS	20597141	20597464	.	+	0	Parent=Os10t0529700-01
Chr10	irgsp1_rep	CDS	20597608	20597988	.	+	0	Parent=Os10t0529700-01
Chr10	irgsp1_rep	three_prime_UTR	20597989	20598092	.	+	.	Parent=Os10t0529700-01
Chr10	irgsp1_rep	mRNA	20600983	20601889	.	+	.	ID=Os10t0529800-00;Name=Os10t0529800-00;Locus_id=Os10g0529800;CGSNL Gene Symbol=GSTU2;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 2;Oryzabase Gene Symbol Synonym(s)=OsGSTU2%2C ParC;Note=Similar to Tau class GST protein 4.;Transcript_evidence=AF309380 (DDBJ%2C Best hit);ORF_evidence=Q6WSC3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);Oryzabase=9522;Expression=AF309380;TENOR=Os10t0529800-00;KEGG=Os10t0529800-00
Chr10	irgsp1_rep	five_prime_UTR	20600983	20600983	.	+	.	Parent=Os10t0529800-00
Chr10	irgsp1_rep	CDS	20600984	20601304	.	+	0	Parent=Os10t0529800-00
Chr10	irgsp1_rep	CDS	20601379	20601771	.	+	0	Parent=Os10t0529800-00
Chr10	irgsp1_rep	three_prime_UTR	20601772	20601889	.	+	.	Parent=Os10t0529800-00
Chr10	irgsp1_rep	mRNA	20610080	20611336	.	+	.	ID=Os10t0530200-01;Name=Os10t0530200-01;Locus_id=Os10g0530200;CGSNL Gene Symbol=GSTU26;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 26;Oryzabase Gene Symbol Synonym(s)=OsGSTU26;Note=Similar to Glutathione S-transferase TSI-1 (EC 2.5.1.18) (Glutathione S- transferase 1).;Transcript_evidence=AK107032 (DDBJ%2C Best hit);ORF_evidence=O04941 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=002-121-B04;Oryzabase=9543;Expression=AK107032;TENOR=Os10t0530200-01;KEGG=Os10t0530200-01 (EC:2.5.1.18)
Chr10	irgsp1_rep	five_prime_UTR	20610080	20610174	.	+	.	Parent=Os10t0530200-01
Chr10	irgsp1_rep	CDS	20610175	20610501	.	+	0	Parent=Os10t0530200-01
Chr10	irgsp1_rep	CDS	20610600	20610980	.	+	0	Parent=Os10t0530200-01
Chr10	irgsp1_rep	three_prime_UTR	20610981	20611336	.	+	.	Parent=Os10t0530200-01
Chr10	irgsp1_rep	mRNA	20617243	20617584	.	+	.	ID=Os10t0530300-00;Name=Os10t0530300-00;Locus_id=Os10g0530300;CGSNL Gene Symbol=GSTU28;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 28;Oryzabase Gene Symbol Synonym(s)=OsGSTU28;Note=Similar to Glutathione S-transferase GST 42 (Fragment).;Transcript_evidence=ab initio prediction;ORF_evidence=Q9FQ97 (UniProt);InterPro=Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);Oryzabase=9545;TENOR=Os10t0530300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	20617243	20617584	.	+	0	Parent=Os10t0530300-00
Chr10	irgsp1_rep	mRNA	20619376	20620523	.	-	.	ID=Os10t0530400-01;Name=Os10t0530400-01;Locus_id=Os10g0530400;CGSNL Gene Symbol=GSTU23;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 23;Oryzabase Gene Symbol Synonym(s)=OsGSTU23;Note=Similar to Glutathione-S-transferase Cla47.;Transcript_evidence=AK105926 (DDBJ%2C Best hit),AK067361 (DDBJ%2C Best hit),AK098972 (DDBJ%2C Best hit),AK104213 (DDBJ%2C Best hit);ORF_evidence=Q8LGN6 (UniProt);NIAS_FLcDNA=001-205-A09,J013101K13,J013077C21,006-305-F07;Oryzabase=9540;TENOR=Os10t0530400-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	20620424	20620523	.	-	.	Parent=Os10t0530400-01
Chr10	irgsp1_rep	CDS	20620091	20620423	.	-	0	Parent=Os10t0530400-01
Chr10	irgsp1_rep	CDS	20619580	20619972	.	-	0	Parent=Os10t0530400-01
Chr10	irgsp1_rep	three_prime_UTR	20619376	20619579	.	-	.	Parent=Os10t0530400-01
Chr10	irgsp1_rep	mRNA	20622453	20623389	.	-	.	ID=Os10t0530500-01;Name=Os10t0530500-01;Locus_id=Os10g0530500;CGSNL Gene Symbol=GSTU13;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 13;Oryzabase Gene Symbol Synonym(s)=OsGSTU13;Note=Similar to Glutathione-S-transferase Cla47.;Transcript_evidence=AK288156 (DDBJ%2C Best hit);ORF_evidence=Q8LGN6 (UniProt);InterPro=Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=J080320F20;Oryzabase=9531;TENOR=Os10t0530500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	20623135	20623389	.	-	.	Parent=Os10t0530500-01
Chr10	irgsp1_rep	CDS	20622664	20623041	.	-	0	Parent=Os10t0530500-01
Chr10	irgsp1_rep	three_prime_UTR	20622453	20622663	.	-	.	Parent=Os10t0530500-01
Chr10	irgsp1_rep	mRNA	20629087	20629985	.	+	.	ID=Os10t0530600-01;Name=Os10t0530600-01;Locus_id=Os10g0530600;CGSNL Gene Symbol=GSTU48;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 48;Oryzabase Gene Symbol Synonym(s)=OsGSTU48;Note=Similar to Glutathione S-transferase GST 20 (EC 2.5.1.18).;Transcript_evidence=AK109314 (DDBJ%2C Best hit);ORF_evidence=A2Z9M0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=002-188-G01;Oryzabase=9565;Expression=AK109314;TENOR=Os10t0530600-01;KEGG=Os10t0530600-01 (EC:2.5.1.18)
Chr10	irgsp1_rep	five_prime_UTR	20629087	20629131	.	+	.	Parent=Os10t0530600-01
Chr10	irgsp1_rep	CDS	20629132	20629863	.	+	0	Parent=Os10t0530600-01
Chr10	irgsp1_rep	three_prime_UTR	20629864	20629985	.	+	.	Parent=Os10t0530600-01
Chr10	irgsp1_rep	mRNA	20629110	20631836	.	-	.	ID=Os10t0530750-00;Name=Os10t0530750-00;Locus_id=Os10g0530750;Note=Hypothetical protein.;Transcript_evidence=AK364077 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0530750-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	20631835	20631836	.	-	.	Parent=Os10t0530750-00
Chr10	irgsp1_rep	CDS	20631706	20631834	.	-	0	Parent=Os10t0530750-00
Chr10	irgsp1_rep	CDS	20629110	20629644	.	-	0	Parent=Os10t0530750-00
Chr10	irgsp1_rep	mRNA	20633317	20634717	.	-	.	ID=Os10t0530800-01;Name=Os10t0530800-01;Locus_id=Os10g0530800;Note=Hypothetical protein.;Transcript_evidence=AK111429 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-182-H06;TENOR=Os10t0530800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	20634717	20634717	.	-	.	Parent=Os10t0530800-01
Chr10	irgsp1_rep	CDS	20634396	20634716	.	-	0	Parent=Os10t0530800-01
Chr10	irgsp1_rep	three_prime_UTR	20633317	20634395	.	-	.	Parent=Os10t0530800-01
Chr10	irgsp1_rep	mRNA	20633891	20634928	.	+	.	ID=Os10t0530900-01;Name=Os10t0530900-01;Locus_id=Os10g0530900;CGSNL Gene Symbol=GSTU50;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 50;Oryzabase Gene Symbol Synonym(s)=OsGSTU50;Oryzabase Gene Name Synonym(s)=glutathione transferase U50;Note=Similar to Glutathione S-transferase GST 30 (EC 2.5.1.18).;Transcript_evidence=AK103699 (DDBJ%2C Best hit),AK059760 (DDBJ%2C Best hit);ORF_evidence=Q8RW01 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=J033136L03,006-203-F02;Oryzabase=9567;Expression=AK103699;TENOR=Os10t0530900-01;KEGG=Os10t0530900-01 (EC:2.5.1.18)
Chr10	irgsp1_rep	five_prime_UTR	20633891	20633969	.	+	.	Parent=Os10t0530900-01
Chr10	irgsp1_rep	CDS	20633970	20634680	.	+	0	Parent=Os10t0530900-01
Chr10	irgsp1_rep	three_prime_UTR	20634681	20634928	.	+	.	Parent=Os10t0530900-01
Chr10	irgsp1_rep	mRNA	20634178	20634800	.	+	.	ID=Os10t0530900-03;Name=Os10t0530900-03;Locus_id=Os10g0530900;CGSNL Gene Symbol=GSTU50;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 50;Oryzabase Gene Symbol Synonym(s)=OsGSTU50;Oryzabase Gene Name Synonym(s)=glutathione transferase U50;Note=Similar to cDNA clone:006-203-F02%2C full insert sequence.;Transcript_evidence=AK059609 (DDBJ%2C Best hit);ORF_evidence=B7E411 (UniProt);InterPro=Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=001-030-F04;Oryzabase=9567;Expression=AK059609;TENOR=Os10t0530900-03;KEGG=Os10t0530900-03 (EC:2.5.1.18)
Chr10	irgsp1_rep	five_prime_UTR	20634178	20634179	.	+	.	Parent=Os10t0530900-03
Chr10	irgsp1_rep	CDS	20634180	20634680	.	+	0	Parent=Os10t0530900-03
Chr10	irgsp1_rep	three_prime_UTR	20634681	20634800	.	+	.	Parent=Os10t0530900-03
Chr10	irgsp1_rep	mRNA	20645752	20646716	.	-	.	ID=Os10t0531300-01;Name=Os10t0531300-01;Locus_id=Os10g0531300;Note=Similar to Glutathione transferase (EC 2.5.1.18).;Transcript_evidence=AK108900 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-152-F05;Expression=AK108900;TENOR=Os10t0531300-01;KEGG=Os10t0531300-01 (EC:2.5.1.18)
Chr10	irgsp1_rep	five_prime_UTR	20646715	20646716	.	-	.	Parent=Os10t0531300-01
Chr10	irgsp1_rep	CDS	20646079	20646714	.	-	0	Parent=Os10t0531300-01
Chr10	irgsp1_rep	three_prime_UTR	20645752	20646078	.	-	.	Parent=Os10t0531300-01
Chr10	irgsp1_rep	mRNA	20645931	20646880	.	+	.	ID=Os10t0531400-01;Name=Os10t0531400-01;Locus_id=Os10g0531400;CGSNL Gene Symbol=GSTU10;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 10;Oryzabase Gene Symbol Synonym(s)=OsGSTU10;Oryzabase Gene Name Synonym(s)=glutathione transferase U10;Note=Glutathione S-transferase GST 30 (EC 2.5.1.18).;Transcript_evidence=AK061233 (DDBJ%2C Best hit);ORF_evidence=B7E411 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=006-211-B03;Oryzabase=9528;Expression=AK061233;TENOR=Os10t0531400-01;KEGG=Os10t0531400-01 (EC:2.5.1.18)
Chr10	irgsp1_rep	five_prime_UTR	20645931	20645994	.	+	.	Parent=Os10t0531400-01
Chr10	irgsp1_rep	CDS	20645995	20646702	.	+	0	Parent=Os10t0531400-01
Chr10	irgsp1_rep	three_prime_UTR	20646703	20646880	.	+	.	Parent=Os10t0531400-01
Chr10	irgsp1_rep	mRNA	20652467	20654875	.	-	.	ID=Os10t0531700-00;Name=Os10t0531700-00;Locus_id=Os10g0531700;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001176249.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os10t0531700-00;KEGG=Os10t0531700-00
Chr10	irgsp1_rep	CDS	20652467	20654875	.	-	0	Parent=Os10t0531700-00
Chr10	irgsp1_rep	mRNA	20660761	20663311	.	-	.	ID=Os10t0531900-01;Name=Os10t0531900-01;Locus_id=Os10g0531900;CGSNL Gene Symbol=BZIP78;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 78;Oryzabase Gene Symbol Synonym(s)=OsbZIP78;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 78;Note=Similar to BZIP-like protein.;Transcript_evidence=AK108607 (DDBJ%2C Best hit);ORF_evidence=NP_001151643.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),Basic leucine zipper (IPR011700);NIAS_FLcDNA=002-146-H05;Oryzabase=10157;Expression=AK108607;TENOR=Os10t0531900-01;KEGG=Os10t0531900-01
Chr10	irgsp1_rep	five_prime_UTR	20663208	20663311	.	-	.	Parent=Os10t0531900-01
Chr10	irgsp1_rep	CDS	20662452	20663207	.	-	0	Parent=Os10t0531900-01
Chr10	irgsp1_rep	CDS	20662205	20662336	.	-	0	Parent=Os10t0531900-01
Chr10	irgsp1_rep	CDS	20662013	20662097	.	-	0	Parent=Os10t0531900-01
Chr10	irgsp1_rep	CDS	20660959	20661188	.	-	2	Parent=Os10t0531900-01
Chr10	irgsp1_rep	three_prime_UTR	20660761	20660958	.	-	.	Parent=Os10t0531900-01
Chr10	irgsp1_rep	mRNA	20671799	20678242	.	+	.	ID=Os10t0532000-01;Name=Os10t0532000-01;Locus_id=Os10g0532000;CGSNL Gene Symbol=NAC18;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 18;Oryzabase Gene Symbol Synonym(s)=ONAC018%2C ONAC18%2C OsSWN4;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 018%2C NAC domain-containing protein 18%2C secondary wall NAC transcription factor 4%2C secondary wall-associated NAC 4%2C SECONDARY WALL NAC DOMAIN PROTEIN 4;Note=Similar to GRAB2 protein.;Transcript_evidence=AK106313 (DDBJ%2C Best hit);ORF_evidence=E5KUH9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=002-101-D07;Oryzabase=11467;Expression=AK106313;TENOR=Os10t0532000-01;KEGG=Os10t0532000-01
Chr10	irgsp1_rep	five_prime_UTR	20671799	20671948	.	+	.	Parent=Os10t0532000-01
Chr10	irgsp1_rep	five_prime_UTR	20675901	20675904	.	+	.	Parent=Os10t0532000-01
Chr10	irgsp1_rep	CDS	20675905	20676067	.	+	0	Parent=Os10t0532000-01
Chr10	irgsp1_rep	CDS	20676182	20676450	.	+	2	Parent=Os10t0532000-01
Chr10	irgsp1_rep	CDS	20677483	20678076	.	+	0	Parent=Os10t0532000-01
Chr10	irgsp1_rep	three_prime_UTR	20678077	20678242	.	+	.	Parent=Os10t0532000-01
Chr10	irgsp1_rep	mRNA	20681520	20685553	.	+	.	ID=Os10t0532100-01;Name=Os10t0532100-01;Locus_id=Os10g0532100;Oryzabase Gene Symbol Synonym(s)=OsHDMA704%2C HDMA704%2C OsPAO11%2C PAO11;Oryzabase Gene Name Synonym(s)=SWIRM domain-containing protein HDMA704%2C histone lysine-specific demethylase 704%2C polyamine oxidase 11;Note=Similar to Amine oxidase%2C flavin-containing.;Transcript_evidence=AK065403 (DDBJ%2C Best hit);ORF_evidence=Q336Y0 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: protein binding (GO:0005515),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Amine oxidase (IPR002937),SWIRM (IPR007526),Homeodomain-like (IPR009057),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991);NIAS_FLcDNA=J013012B02;Oryzabase=12524;Expression=AK065403;TENOR=Os10t0532100-01;KEGG=Os10t0532100-01
Chr10	irgsp1_rep	CDS	20681520	20682802	.	+	0	Parent=Os10t0532100-01
Chr10	irgsp1_rep	CDS	20682895	20683036	.	+	1	Parent=Os10t0532100-01
Chr10	irgsp1_rep	CDS	20683355	20685553	.	+	0	Parent=Os10t0532100-01
Chr10	irgsp1_rep	mRNA	20687168	20689079	.	+	.	ID=Os10t0532150-00;Name=Os10t0532150-00;Locus_id=Os10g0532150;Oryzabase Gene Symbol Synonym(s)=OsHDMA704%2C HDMA704%2C OsPAO11%2C PAO11;Oryzabase Gene Name Synonym(s)=SWIRM domain-containing protein HDMA704%2C histone lysine-specific demethylase 704%2C polyamine oxidase 11;Note=Similar to Amine oxidase%2C flavin-containing family protein%2C expressed.;Transcript_evidence=AK372474 (DDBJ);ORF_evidence=Q336Y0 (UniProt);Oryzabase=12524;TENOR=Os10t0532150-00
Chr10	irgsp1_rep	CDS	20687168	20687773	.	+	0	Parent=Os10t0532150-00
Chr10	irgsp1_rep	CDS	20688044	20688118	.	+	0	Parent=Os10t0532150-00
Chr10	irgsp1_rep	CDS	20688324	20688389	.	+	0	Parent=Os10t0532150-00
Chr10	irgsp1_rep	three_prime_UTR	20688390	20689079	.	+	.	Parent=Os10t0532150-00
Chr10	irgsp1_rep	mRNA	20692577	20696225	.	-	.	ID=Os10t0532200-01;Name=Os10t0532200-01;Locus_id=Os10g0532200;CGSNL Gene Symbol=BDG;CGSNL Gene Name=BODYGUARD;Oryzabase Gene Symbol Synonym(s)=OsBDG;Note=Alpha/beta hydrolase family protein.;Transcript_evidence=AK107095 (DDBJ%2C Best hit);ORF_evidence=NP_564837.1 (RefSeq);InterPro=Alpha/beta hydrolase fold-1 (IPR000073);NIAS_FLcDNA=002-121-H06;Oryzabase=23290;Expression=AK107095;TENOR=Os10t0532200-01;KEGG=Os10t0532200-01
Chr10	irgsp1_rep	five_prime_UTR	20696173	20696225	.	-	.	Parent=Os10t0532200-01
Chr10	irgsp1_rep	CDS	20695273	20696172	.	-	0	Parent=Os10t0532200-01
Chr10	irgsp1_rep	CDS	20694998	20695197	.	-	0	Parent=Os10t0532200-01
Chr10	irgsp1_rep	CDS	20692990	20693311	.	-	1	Parent=Os10t0532200-01
Chr10	irgsp1_rep	three_prime_UTR	20692577	20692989	.	-	.	Parent=Os10t0532200-01
Chr10	irgsp1_rep	mRNA	20702195	20703525	.	-	.	ID=Os10t0532300-01;Name=Os10t0532300-01;Locus_id=Os10g0532300;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK069934 (DDBJ%2C Best hit);ORF_evidence=Q2QSQ6 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);NIAS_FLcDNA=J023035E16;Expression=AK069934;TENOR=Os10t0532300-01;KEGG=Os10t0532300-01
Chr10	irgsp1_rep	five_prime_UTR	20703385	20703525	.	-	.	Parent=Os10t0532300-01
Chr10	irgsp1_rep	CDS	20703376	20703384	.	-	0	Parent=Os10t0532300-01
Chr10	irgsp1_rep	CDS	20703034	20703109	.	-	0	Parent=Os10t0532300-01
Chr10	irgsp1_rep	CDS	20702445	20702899	.	-	2	Parent=Os10t0532300-01
Chr10	irgsp1_rep	three_prime_UTR	20702195	20702444	.	-	.	Parent=Os10t0532300-01
Chr10	irgsp1_rep	mRNA	20714505	20715564	.	+	.	ID=Os10t0532600-01;Name=Os10t0532600-01;Locus_id=Os10g0532600;Oryzabase Gene Symbol Synonym(s)=OsOFP17%2C OsOFP27;Oryzabase Gene Name Synonym(s)=OVATE family protein 17%2C ovate family protein 27%2C OVATE-domain containing protein 27;Note=Protein of unknown function DUF623%2C plant domain containing protein.;Transcript_evidence=AK060309 (DDBJ%2C Best hit);ORF_evidence=NP_001146915.1 (RefSeq);InterPro=Domain of unknown function DUF623 (IPR006458);NIAS_FLcDNA=001-007-B04;Oryzabase=18313;Expression=AK060309;TENOR=Os10t0532600-01;KEGG=Os10t0532600-01
Chr10	irgsp1_rep	five_prime_UTR	20714505	20714607	.	+	.	Parent=Os10t0532600-01
Chr10	irgsp1_rep	CDS	20714608	20715399	.	+	0	Parent=Os10t0532600-01
Chr10	irgsp1_rep	three_prime_UTR	20715400	20715564	.	+	.	Parent=Os10t0532600-01
Chr10	irgsp1_rep	mRNA	20720597	20722927	.	-	.	ID=Os10t0532800-01;Name=Os10t0532800-01;Locus_id=Os10g0532800;Note=Conserved hypothetical protein.;Transcript_evidence=AK068817 (DDBJ%2C Best hit);ORF_evidence=Q8LN39 (UniProt);NIAS_FLcDNA=J013162E10;Oryzabase=17605;TENOR=Os10t0532800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	20722737	20722927	.	-	.	Parent=Os10t0532800-01
Chr10	irgsp1_rep	CDS	20722512	20722736	.	-	0	Parent=Os10t0532800-01
Chr10	irgsp1_rep	three_prime_UTR	20720597	20722511	.	-	.	Parent=Os10t0532800-01
Chr10	irgsp1_rep	mRNA	20719171	20722861	.	-	.	ID=Os10t0532800-02;Name=Os10t0532800-02;Locus_id=Os10g0532800;Note=Conserved hypothetical protein.;Transcript_evidence=AK069346 (DDBJ%2C Best hit);ORF_evidence=Q8LN39 (UniProt);NIAS_FLcDNA=J023010E21;Oryzabase=17605;TENOR=Os10t0532800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	20722737	20722861	.	-	.	Parent=Os10t0532800-02
Chr10	irgsp1_rep	CDS	20722512	20722736	.	-	0	Parent=Os10t0532800-02
Chr10	irgsp1_rep	three_prime_UTR	20722476	20722511	.	-	.	Parent=Os10t0532800-02
Chr10	irgsp1_rep	three_prime_UTR	20719171	20720997	.	-	.	Parent=Os10t0532800-02
Chr10	irgsp1_rep	mRNA	20725051	20731000	.	+	.	ID=Os10t0533000-01;Name=Os10t0533000-01;Locus_id=Os10g0533000;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK111576 (DDBJ%2C Best hit),AK120838 (DDBJ%2C Best hit);ORF_evidence=NP_001151564.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: cofactor binding (GO:0048037);InterPro=D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding (IPR006140),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013075J23,J023022B11;TENOR=Os10t0533000-01
Chr10	irgsp1_rep	five_prime_UTR	20725051	20725107	.	+	.	Parent=Os10t0533000-01
Chr10	irgsp1_rep	CDS	20725108	20725725	.	+	0	Parent=Os10t0533000-01
Chr10	irgsp1_rep	CDS	20726432	20726600	.	+	0	Parent=Os10t0533000-01
Chr10	irgsp1_rep	CDS	20726736	20726866	.	+	2	Parent=Os10t0533000-01
Chr10	irgsp1_rep	CDS	20727319	20728113	.	+	0	Parent=Os10t0533000-01
Chr10	irgsp1_rep	CDS	20728255	20728302	.	+	0	Parent=Os10t0533000-01
Chr10	irgsp1_rep	CDS	20728678	20728794	.	+	0	Parent=Os10t0533000-01
Chr10	irgsp1_rep	CDS	20729261	20729335	.	+	0	Parent=Os10t0533000-01
Chr10	irgsp1_rep	three_prime_UTR	20729336	20731000	.	+	.	Parent=Os10t0533000-01
Chr10	irgsp1_rep	mRNA	20729504	20730454	.	-	.	ID=Os10t0533100-01;Name=Os10t0533100-01;Locus_id=Os10g0533100;Note=Similar to ABC-type Co2+ transport system%2C permease component.;Transcript_evidence=AK111957 (DDBJ%2C Best hit),AK099073 (DDBJ%2C Best hit);ORF_evidence=NP_001151720.1 (RefSeq);InterPro=Protein of unknown function DUF3464 (IPR021855);NIAS_FLcDNA=001-029-H09,J023001P04;Expression=AK111957;TENOR=Os10t0533100-01;KEGG=Os10t0533100-01
Chr10	irgsp1_rep	five_prime_UTR	20730391	20730454	.	-	.	Parent=Os10t0533100-01
Chr10	irgsp1_rep	CDS	20729725	20730390	.	-	0	Parent=Os10t0533100-01
Chr10	irgsp1_rep	three_prime_UTR	20729504	20729724	.	-	.	Parent=Os10t0533100-01
Chr10	irgsp1_rep	mRNA	20731394	20734111	.	-	.	ID=Os10t0533150-00;Name=Os10t0533150-00;Locus_id=Os10g0533150;Note=Similar to BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1.;Transcript_evidence=BT083970 (DDBJ);ORF_evidence=B6SVN5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os10t0533150-00;KEGG=Os10t0533150-00
Chr10	irgsp1_rep	CDS	20733297	20734111	.	-	0	Parent=Os10t0533150-00
Chr10	irgsp1_rep	CDS	20732691	20732792	.	-	1	Parent=Os10t0533150-00
Chr10	irgsp1_rep	CDS	20732485	20732607	.	-	1	Parent=Os10t0533150-00
Chr10	irgsp1_rep	CDS	20731864	20732263	.	-	1	Parent=Os10t0533150-00
Chr10	irgsp1_rep	CDS	20731561	20731767	.	-	0	Parent=Os10t0533150-00
Chr10	irgsp1_rep	CDS	20731394	20731456	.	-	0	Parent=Os10t0533150-00
Chr10	irgsp1_rep	mRNA	20736987	20738310	.	+	.	ID=Os10t0533200-01;Name=Os10t0533200-01;Locus_id=Os10g0533200;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK106036 (DDBJ%2C Best hit);ORF_evidence=NP_001149828.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=Ornithine cyclodeaminase/mu-crystallin (IPR003462),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-206-D08;Expression=AK106036;TENOR=Os10t0533200-01;KEGG=Os10t0533200-01
Chr10	irgsp1_rep	five_prime_UTR	20736987	20737015	.	+	.	Parent=Os10t0533200-01
Chr10	irgsp1_rep	CDS	20737016	20738026	.	+	0	Parent=Os10t0533200-01
Chr10	irgsp1_rep	three_prime_UTR	20738027	20738310	.	+	.	Parent=Os10t0533200-01
Chr10	irgsp1_rep	mRNA	20744421	20746446	.	+	.	ID=Os10t0533500-00;Name=Os10t0533500-00;Locus_id=Os10g0533500;Oryzabase Gene Symbol Synonym(s)=OsBCH3%2C OsHYD2;Oryzabase Gene Name Synonym(s)=beta-Carotene Hydroxylase 3%2C carotene beta-ring hydroxylase 2;Note=Similar to Beta-ring hydroxylase (Fragment).;Transcript_evidence=CT837931 (DDBJ%2C Best hit);ORF_evidence=NP_001148085.1 (RefSeq);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Fatty acid hydroxylase (IPR006694);Oryzabase=18458;TENOR=Os10t0533500-00;KEGG=Os10t0533500-00 (EC:1.14.13.-)
Chr10	irgsp1_rep	five_prime_UTR	20744421	20744524	.	+	.	Parent=Os10t0533500-00
Chr10	irgsp1_rep	CDS	20744525	20744857	.	+	0	Parent=Os10t0533500-00
Chr10	irgsp1_rep	CDS	20744924	20745196	.	+	0	Parent=Os10t0533500-00
Chr10	irgsp1_rep	CDS	20745597	20745722	.	+	0	Parent=Os10t0533500-00
Chr10	irgsp1_rep	CDS	20745850	20745906	.	+	0	Parent=Os10t0533500-00
Chr10	irgsp1_rep	CDS	20746168	20746257	.	+	0	Parent=Os10t0533500-00
Chr10	irgsp1_rep	three_prime_UTR	20746258	20746446	.	+	.	Parent=Os10t0533500-00
Chr10	irgsp1_rep	mRNA	20756189	20759946	.	+	.	ID=Os10t0533600-01;Name=Os10t0533600-01;Locus_id=Os10g0533600;RAP-DB Gene Symbol Synonym(s)=OsMPK4;RAP-DB Gene Name Synonym(s)=MAP kinase 4;CGSNL Gene Symbol=MPK6;CGSNL Gene Name=MITOGEN-ACTIVATED PROTEIN KINASE 6;Oryzabase Gene Symbol Synonym(s)=OsMPK6%2C OsDR6%2C OsMPK4;Oryzabase Gene Name Synonym(s)=mitogen-activated protein kinase 6%2C MAP kinase 4;Note=Mitogen-activated protein kinase (MAPK)%2C Regulation of salt stress tolerance;Transcript_evidence=AK111579;ORF_evidence=Q336X9;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: MAP kinase activity (GO:0004707),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),Protein kinase domain (IPR000719),Protein kinase%2C ATP binding site (IPR017441),Mitogen-activated protein (MAP) kinase%2C conserved site (IPR003527),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J013088I11;Manual Curation=October 16%2C 2020;Literature_PMID=25219319;Oryzabase=10233;Expression=AK111579;TENOR=Os10t0533600-01;KEGG=Os10t0533600-01 (EC:2.7.11.24)
Chr10	irgsp1_rep	five_prime_UTR	20756189	20756355	.	+	.	Parent=Os10t0533600-01
Chr10	irgsp1_rep	CDS	20756356	20756528	.	+	0	Parent=Os10t0533600-01
Chr10	irgsp1_rep	CDS	20756798	20756927	.	+	1	Parent=Os10t0533600-01
Chr10	irgsp1_rep	CDS	20757952	20758089	.	+	0	Parent=Os10t0533600-01
Chr10	irgsp1_rep	CDS	20758271	20758603	.	+	0	Parent=Os10t0533600-01
Chr10	irgsp1_rep	CDS	20758821	20759004	.	+	0	Parent=Os10t0533600-01
Chr10	irgsp1_rep	CDS	20759078	20759250	.	+	2	Parent=Os10t0533600-01
Chr10	irgsp1_rep	three_prime_UTR	20759251	20759258	.	+	.	Parent=Os10t0533600-01
Chr10	irgsp1_rep	three_prime_UTR	20759693	20759946	.	+	.	Parent=Os10t0533600-01
Chr10	irgsp1_rep	mRNA	20756339	20756932	.	-	.	ID=Os10t0533701-00;Name=Os10t0533701-00;Locus_id=Os10g0533701;Note=Hypothetical gene.;Transcript_evidence=EU950357 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0533701-00;KEGG=Os10t0533701-00
Chr10	irgsp1_rep	five_prime_UTR	20756915	20756932	.	-	.	Parent=Os10t0533701-00
Chr10	irgsp1_rep	CDS	20756743	20756914	.	-	0	Parent=Os10t0533701-00
Chr10	irgsp1_rep	CDS	20756514	20756554	.	-	2	Parent=Os10t0533701-00
Chr10	irgsp1_rep	three_prime_UTR	20756339	20756513	.	-	.	Parent=Os10t0533701-00
Chr10	irgsp1_rep	mRNA	20764086	20766209	.	+	.	ID=Os10t0533800-00;Name=Os10t0533800-00;Locus_id=Os10g0533800;Note=Concanavalin A-like lectin/glucanase%2C subgroup domain containing protein.;Transcript_evidence=AK365423 (DDBJ);ORF_evidence=NP_001065157.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os10t0533800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	20764086	20766182	.	+	0	Parent=Os10t0533800-00
Chr10	irgsp1_rep	three_prime_UTR	20766183	20766209	.	+	.	Parent=Os10t0533800-00
Chr10	irgsp1_rep	mRNA	20768491	20777051	.	+	.	ID=Os10t0533900-01;Name=Os10t0533900-01;Locus_id=Os10g0533900;Note=Protein of unknown function DUF862%2C eukaryotic domain containing protein.;Transcript_evidence=AK104667 (DDBJ%2C Best hit),AK073543 (DDBJ%2C Best hit);ORF_evidence=B8BI04 (UniProt);InterPro=Domain of unknown function DUF862%2C eukaryotic (IPR008580);NIAS_FLcDNA=006-312-A10,J033043D19;TENOR=Os10t0533900-01
Chr10	irgsp1_rep	five_prime_UTR	20768491	20768651	.	+	.	Parent=Os10t0533900-01
Chr10	irgsp1_rep	CDS	20768652	20768786	.	+	0	Parent=Os10t0533900-01
Chr10	irgsp1_rep	CDS	20768934	20769195	.	+	0	Parent=Os10t0533900-01
Chr10	irgsp1_rep	CDS	20769847	20769914	.	+	2	Parent=Os10t0533900-01
Chr10	irgsp1_rep	CDS	20776606	20776881	.	+	0	Parent=Os10t0533900-01
Chr10	irgsp1_rep	three_prime_UTR	20776882	20777051	.	+	.	Parent=Os10t0533900-01
Chr10	irgsp1_rep	mRNA	20780072	20783593	.	-	.	ID=Os10t0534100-01;Name=Os10t0534100-01;Locus_id=Os10g0534100;Note=Similar to cDNA clone:J013052N15%2C full insert sequence.;Transcript_evidence=AK101036 (DDBJ%2C Best hit);ORF_evidence=Q336X7 (UniProt);NIAS_FLcDNA=J033000D16;TENOR=Os10t0534100-01
Chr10	irgsp1_rep	five_prime_UTR	20783296	20783593	.	-	.	Parent=Os10t0534100-01
Chr10	irgsp1_rep	five_prime_UTR	20782488	20782568	.	-	.	Parent=Os10t0534100-01
Chr10	irgsp1_rep	CDS	20782427	20782487	.	-	0	Parent=Os10t0534100-01
Chr10	irgsp1_rep	CDS	20780918	20781757	.	-	2	Parent=Os10t0534100-01
Chr10	irgsp1_rep	CDS	20780532	20780777	.	-	2	Parent=Os10t0534100-01
Chr10	irgsp1_rep	CDS	20780417	20780431	.	-	2	Parent=Os10t0534100-01
Chr10	irgsp1_rep	CDS	20780199	20780339	.	-	2	Parent=Os10t0534100-01
Chr10	irgsp1_rep	CDS	20780072	20780111	.	-	2	Parent=Os10t0534100-01
Chr10	irgsp1_rep	mRNA	20779640	20783592	.	-	.	ID=Os10t0534100-02;Name=Os10t0534100-02;Locus_id=Os10g0534100;Note=Conserved hypothetical protein.;Transcript_evidence=AK120472 (DDBJ%2C Best hit);ORF_evidence=Q336X6 (UniProt);NIAS_FLcDNA=J013110J07;Expression=AK120472;TENOR=Os10t0534100-02;KEGG=Os10t0534100-02
Chr10	irgsp1_rep	five_prime_UTR	20783296	20783592	.	-	.	Parent=Os10t0534100-02
Chr10	irgsp1_rep	five_prime_UTR	20782488	20782568	.	-	.	Parent=Os10t0534100-02
Chr10	irgsp1_rep	CDS	20782427	20782487	.	-	0	Parent=Os10t0534100-02
Chr10	irgsp1_rep	CDS	20780918	20781757	.	-	2	Parent=Os10t0534100-02
Chr10	irgsp1_rep	CDS	20780532	20780777	.	-	2	Parent=Os10t0534100-02
Chr10	irgsp1_rep	CDS	20780417	20780431	.	-	2	Parent=Os10t0534100-02
Chr10	irgsp1_rep	CDS	20780199	20780339	.	-	2	Parent=Os10t0534100-02
Chr10	irgsp1_rep	CDS	20780064	20780111	.	-	2	Parent=Os10t0534100-02
Chr10	irgsp1_rep	CDS	20779850	20779920	.	-	2	Parent=Os10t0534100-02
Chr10	irgsp1_rep	three_prime_UTR	20779640	20779849	.	-	.	Parent=Os10t0534100-02
Chr10	irgsp1_rep	mRNA	20779640	20783590	.	-	.	ID=Os10t0534100-03;Name=Os10t0534100-03;Locus_id=Os10g0534100;Note=Similar to predicted protein.;Transcript_evidence=AK071890 (DDBJ%2C Best hit);ORF_evidence=Q336X6 (UniProt);NIAS_FLcDNA=J013052N15;Expression=AK071890;TENOR=Os10t0534100-03;KEGG=Os10t0534100-03
Chr10	irgsp1_rep	five_prime_UTR	20783296	20783590	.	-	.	Parent=Os10t0534100-03
Chr10	irgsp1_rep	five_prime_UTR	20782488	20782568	.	-	.	Parent=Os10t0534100-03
Chr10	irgsp1_rep	CDS	20782427	20782487	.	-	0	Parent=Os10t0534100-03
Chr10	irgsp1_rep	CDS	20780918	20781757	.	-	2	Parent=Os10t0534100-03
Chr10	irgsp1_rep	CDS	20780532	20780777	.	-	2	Parent=Os10t0534100-03
Chr10	irgsp1_rep	CDS	20780417	20780431	.	-	2	Parent=Os10t0534100-03
Chr10	irgsp1_rep	CDS	20780199	20780339	.	-	2	Parent=Os10t0534100-03
Chr10	irgsp1_rep	CDS	20780064	20780111	.	-	2	Parent=Os10t0534100-03
Chr10	irgsp1_rep	CDS	20779769	20779785	.	-	2	Parent=Os10t0534100-03
Chr10	irgsp1_rep	three_prime_UTR	20779640	20779768	.	-	.	Parent=Os10t0534100-03
Chr10	irgsp1_rep	mRNA	20779595	20781730	.	-	.	ID=Os10t0534100-04;Name=Os10t0534100-04;Locus_id=Os10g0534100;Note=Similar to cDNA clone:J013052N15%2C full insert sequence.;Transcript_evidence=AK058873 (DDBJ%2C Best hit);ORF_evidence=Q336X7 (UniProt);NIAS_FLcDNA=001-006-F06;Expression=AK058873;TENOR=Os10t0534100-04;KEGG=Os10t0534100-04
Chr10	irgsp1_rep	five_prime_UTR	20781729	20781730	.	-	.	Parent=Os10t0534100-04
Chr10	irgsp1_rep	CDS	20780918	20781728	.	-	0	Parent=Os10t0534100-04
Chr10	irgsp1_rep	CDS	20780532	20780777	.	-	2	Parent=Os10t0534100-04
Chr10	irgsp1_rep	CDS	20780417	20780431	.	-	2	Parent=Os10t0534100-04
Chr10	irgsp1_rep	CDS	20780199	20780339	.	-	2	Parent=Os10t0534100-04
Chr10	irgsp1_rep	CDS	20780071	20780111	.	-	2	Parent=Os10t0534100-04
Chr10	irgsp1_rep	CDS	20779707	20779709	.	-	0	Parent=Os10t0534100-04
Chr10	irgsp1_rep	three_prime_UTR	20779595	20779706	.	-	.	Parent=Os10t0534100-04
Chr10	irgsp1_rep	mRNA	20786594	20787842	.	-	.	ID=Os10t0534400-01;Name=Os10t0534400-01;Locus_id=Os10g0534400;Note=Similar to E4 protein (Fragment).;Transcript_evidence=AK105216 (DDBJ%2C Best hit);ORF_evidence=B8BI06 (UniProt);NIAS_FLcDNA=001-110-B04;Expression=AK105216;TENOR=Os10t0534400-01;KEGG=Os10t0534400-01
Chr10	irgsp1_rep	five_prime_UTR	20787757	20787842	.	-	.	Parent=Os10t0534400-01
Chr10	irgsp1_rep	CDS	20786965	20787756	.	-	0	Parent=Os10t0534400-01
Chr10	irgsp1_rep	CDS	20786846	20786860	.	-	0	Parent=Os10t0534400-01
Chr10	irgsp1_rep	three_prime_UTR	20786594	20786845	.	-	.	Parent=Os10t0534400-01
Chr10	irgsp1_rep	mRNA	20791019	20795489	.	-	.	ID=Os10t0534500-01;Name=Os10t0534500-01;Locus_id=Os10g0534500;Oryzabase Gene Symbol Synonym(s)=OsCrRLK1L16;Oryzabase Gene Name Synonym(s)=Catharanthus roseus receptor-like kinase1-like kinase 16;Note=Similar to Resistance protein candidate (Fragment).;Transcript_evidence=AK070172 (DDBJ%2C Best hit);ORF_evidence=Q8LN27 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Malectin-like carbohydrate-binding domain (IPR024788);NIAS_FLcDNA=J023042J16;Oryzabase=18684;Expression=AK070172;TENOR=Os10t0534500-01;KEGG=Os10t0534500-01
Chr10	irgsp1_rep	five_prime_UTR	20795398	20795489	.	-	.	Parent=Os10t0534500-01
Chr10	irgsp1_rep	CDS	20792863	20795397	.	-	0	Parent=Os10t0534500-01
Chr10	irgsp1_rep	three_prime_UTR	20792102	20792862	.	-	.	Parent=Os10t0534500-01
Chr10	irgsp1_rep	three_prime_UTR	20791944	20792017	.	-	.	Parent=Os10t0534500-01
Chr10	irgsp1_rep	three_prime_UTR	20791712	20791838	.	-	.	Parent=Os10t0534500-01
Chr10	irgsp1_rep	three_prime_UTR	20791019	20791641	.	-	.	Parent=Os10t0534500-01
Chr10	irgsp1_rep	mRNA	20792529	20795403	.	-	.	ID=Os10t0534500-02;Name=Os10t0534500-02;Locus_id=Os10g0534500;Oryzabase Gene Symbol Synonym(s)=OsCrRLK1L16;Oryzabase Gene Name Synonym(s)=Catharanthus roseus receptor-like kinase1-like kinase 16;Note=Similar to Resistance protein candidate (Fragment).;Transcript_evidence=AK065054 (DDBJ%2C Best hit);ORF_evidence=Q8LN27 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Malectin-like carbohydrate-binding domain (IPR024788);NIAS_FLcDNA=J013001J01;Oryzabase=18684;Expression=AK065054;TENOR=Os10t0534500-02;KEGG=Os10t0534500-02
Chr10	irgsp1_rep	five_prime_UTR	20795398	20795403	.	-	.	Parent=Os10t0534500-02
Chr10	irgsp1_rep	CDS	20792863	20795397	.	-	0	Parent=Os10t0534500-02
Chr10	irgsp1_rep	three_prime_UTR	20792529	20792862	.	-	.	Parent=Os10t0534500-02
Chr10	irgsp1_rep	mRNA	20792875	20795881	.	+	.	ID=Os10t0534600-01;Name=Os10t0534600-01;Locus_id=Os10g0534600;Note=Hypothetical protein.;Transcript_evidence=AK103845 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033148J20;TENOR=Os10t0534600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	20792875	20794140	.	+	0	Parent=Os10t0534600-01
Chr10	irgsp1_rep	three_prime_UTR	20794141	20795881	.	+	.	Parent=Os10t0534600-01
Chr10	irgsp1_rep	mRNA	20796326	20798763	.	-	.	ID=Os10t0534700-01;Name=Os10t0534700-01;Locus_id=Os10g0534700;Note=Protein of unknown function DUF604 family protein.;Transcript_evidence=AK071861 (DDBJ%2C Best hit);ORF_evidence=Q01KI0 (UniProt);InterPro=Protein of unknown function DUF604 (IPR006740);NIAS_FLcDNA=J023123I12;Expression=AK071861;TENOR=Os10t0534700-01;KEGG=Os10t0534700-01
Chr10	irgsp1_rep	five_prime_UTR	20798600	20798763	.	-	.	Parent=Os10t0534700-01
Chr10	irgsp1_rep	CDS	20797130	20798599	.	-	0	Parent=Os10t0534700-01
Chr10	irgsp1_rep	CDS	20796797	20796910	.	-	0	Parent=Os10t0534700-01
Chr10	irgsp1_rep	three_prime_UTR	20796793	20796796	.	-	.	Parent=Os10t0534700-01
Chr10	irgsp1_rep	three_prime_UTR	20796326	20796694	.	-	.	Parent=Os10t0534700-01
Chr10	irgsp1_rep	mRNA	20797164	20799404	.	+	.	ID=Os10t0534801-01;Name=Os10t0534801-01;Locus_id=Os10g0534801;Note=Hypothetical gene.;Transcript_evidence=AK119966 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-184-D10;Expression=AK119966;TENOR=Os10t0534801-01;KEGG=Os10t0534801-01
Chr10	irgsp1_rep	five_prime_UTR	20797164	20797165	.	+	.	Parent=Os10t0534801-01
Chr10	irgsp1_rep	CDS	20797166	20798353	.	+	0	Parent=Os10t0534801-01
Chr10	irgsp1_rep	three_prime_UTR	20798354	20799404	.	+	.	Parent=Os10t0534801-01
Chr10	irgsp1_rep	mRNA	20801749	20806453	.	-	.	ID=Os10t0534900-01;Name=Os10t0534900-01;Locus_id=Os10g0534900;Note=Similar to Prep (Fragment).;Transcript_evidence=AK068029 (DDBJ%2C Best hit);ORF_evidence=B6SZ15 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),POX (IPR006563),Homeobox KN domain (IPR008422),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);NIAS_FLcDNA=J013134A07;Expression=AK068029;TENOR=Os10t0534900-01;KEGG=Os10t0534900-01
Chr10	irgsp1_rep	five_prime_UTR	20806225	20806453	.	-	.	Parent=Os10t0534900-01
Chr10	irgsp1_rep	CDS	20805556	20806224	.	-	0	Parent=Os10t0534900-01
Chr10	irgsp1_rep	CDS	20804467	20804846	.	-	0	Parent=Os10t0534900-01
Chr10	irgsp1_rep	CDS	20803255	20803315	.	-	1	Parent=Os10t0534900-01
Chr10	irgsp1_rep	CDS	20802156	20802806	.	-	0	Parent=Os10t0534900-01
Chr10	irgsp1_rep	three_prime_UTR	20801749	20802155	.	-	.	Parent=Os10t0534900-01
Chr10	irgsp1_rep	mRNA	20833195	20833699	.	+	.	ID=Os10t0535575-00;Name=Os10t0535575-00;Locus_id=Os10g0535575;Note=Hypothetical protein.;Transcript_evidence=tplb0001l19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0535575-00
Chr10	irgsp1_rep	five_prime_UTR	20833195	20833196	.	+	.	Parent=Os10t0535575-00
Chr10	irgsp1_rep	CDS	20833197	20833526	.	+	0	Parent=Os10t0535575-00
Chr10	irgsp1_rep	three_prime_UTR	20833527	20833699	.	+	.	Parent=Os10t0535575-00
Chr10	irgsp1_rep	mRNA	20837435	20838911	.	-	.	ID=Os10t0535600-01;Name=Os10t0535600-01;Locus_id=Os10g0535600;Note=Similar to Hydrolase.;Transcript_evidence=AK109098 (DDBJ%2C Best hit);ORF_evidence=B6TXT9 (UniProt);NIAS_FLcDNA=002-155-A11;Expression=AK109098;TENOR=Os10t0535600-01;KEGG=Os10t0535600-01
Chr10	irgsp1_rep	five_prime_UTR	20838890	20838911	.	-	.	Parent=Os10t0535600-01
Chr10	irgsp1_rep	CDS	20838541	20838889	.	-	0	Parent=Os10t0535600-01
Chr10	irgsp1_rep	CDS	20838186	20838451	.	-	2	Parent=Os10t0535600-01
Chr10	irgsp1_rep	CDS	20837732	20837764	.	-	0	Parent=Os10t0535600-01
Chr10	irgsp1_rep	three_prime_UTR	20837435	20837731	.	-	.	Parent=Os10t0535600-01
Chr10	irgsp1_rep	mRNA	20843118	20845183	.	+	.	ID=Os10t0535800-01;Name=Os10t0535800-01;Locus_id=Os10g0535800;Note=Protein of unknown function Cys-rich domain containing protein.;Transcript_evidence=AK243468 (DDBJ%2C Best hit);ORF_evidence=NP_974084.1 (RefSeq);InterPro=Uncharacterised protein family Cys-rich (IPR006461);NIAS_FLcDNA=J100071P13;TENOR=Os10t0535800-01;KEGG=Os10t0535800-01
Chr10	irgsp1_rep	five_prime_UTR	20843118	20843184	.	+	.	Parent=Os10t0535800-01
Chr10	irgsp1_rep	CDS	20843185	20843287	.	+	0	Parent=Os10t0535800-01
Chr10	irgsp1_rep	CDS	20843384	20843405	.	+	2	Parent=Os10t0535800-01
Chr10	irgsp1_rep	CDS	20843518	20843574	.	+	1	Parent=Os10t0535800-01
Chr10	irgsp1_rep	CDS	20843878	20843959	.	+	1	Parent=Os10t0535800-01
Chr10	irgsp1_rep	CDS	20844077	20844172	.	+	0	Parent=Os10t0535800-01
Chr10	irgsp1_rep	CDS	20844439	20844563	.	+	0	Parent=Os10t0535800-01
Chr10	irgsp1_rep	CDS	20844658	20844676	.	+	1	Parent=Os10t0535800-01
Chr10	irgsp1_rep	CDS	20844772	20844918	.	+	0	Parent=Os10t0535800-01
Chr10	irgsp1_rep	three_prime_UTR	20844919	20845183	.	+	.	Parent=Os10t0535800-01
Chr10	irgsp1_rep	mRNA	20846252	20847616	.	+	.	ID=Os10t0535900-00;Name=Os10t0535900-00;Locus_id=Os10g0535900;Note=Similar to ATEXPA7 (ARABIDOPSIS THALIANA EXPANSIN A7).;Transcript_evidence=AK372378 (DDBJ);ORF_evidence=XP_002889941.1 (RefSeq);GO=Biological Process: plant-type cell wall organization (GO:0009664),Cellular Component: extracellular region (GO:0005576);InterPro=Expansin (IPR002963),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);TENOR=Os10t0535900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	20846252	20846282	.	+	.	Parent=Os10t0535900-00
Chr10	irgsp1_rep	CDS	20846283	20846445	.	+	0	Parent=Os10t0535900-00
Chr10	irgsp1_rep	CDS	20846870	20847507	.	+	2	Parent=Os10t0535900-00
Chr10	irgsp1_rep	three_prime_UTR	20847508	20847616	.	+	.	Parent=Os10t0535900-00
Chr10	irgsp1_rep	mRNA	20848054	20851319	.	-	.	ID=Os10t0536000-01;Name=Os10t0536000-01;Locus_id=Os10g0536000;RAP-DB Gene Symbol Synonym(s)=OsSCE1;RAP-DB Gene Name Synonym(s)=SUMO-conjugating enzyme 1;Oryzabase Gene Symbol Synonym(s)=OsSce1%2C OsUBC1%2C UBC1%2C OsSCE1b%2C SCE1b%2C OsSCE1b.1%2C OsSCE1b.2;Oryzabase Gene Name Synonym(s)=SUMO-conjugating enzyme 1%2C Ubiquitin-conjugating enzyme 1%2C E2 SUMO conjugation enzyme 1b%2C SUMO conjugation enzyme 1b%2C E2 protein SCE1b;Note=SUMO conjugating enzyme%2C Carbohydrate metabolism%2C Response to drought stress;Transcript_evidence=AK121221;ORF_evidence=Q8W2X7;InterPro=Ubiquitin-conjugating enzyme/RWD-like (IPR016135),Ubiquitin-conjugating enzyme E2 (IPR000608),Ubiquitin-conjugating enzyme%2C active site (IPR023313);NIAS_FLcDNA=J023090H15;Manual Curation=June 20%2C 2019;Literature_PMID=31212102;Oryzabase=13202;Expression=AK121221;TENOR=Os10t0536000-01;KEGG=Os10t0536000-01 (EC:6.3.2.19);Subcellular location=nucleus (GO:0005634)
Chr10	irgsp1_rep	five_prime_UTR	20851210	20851319	.	-	.	Parent=Os10t0536000-01
Chr10	irgsp1_rep	CDS	20851141	20851209	.	-	0	Parent=Os10t0536000-01
Chr10	irgsp1_rep	CDS	20850964	20851047	.	-	0	Parent=Os10t0536000-01
Chr10	irgsp1_rep	CDS	20848639	20848791	.	-	0	Parent=Os10t0536000-01
Chr10	irgsp1_rep	CDS	20848450	20848563	.	-	0	Parent=Os10t0536000-01
Chr10	irgsp1_rep	CDS	20848301	20848363	.	-	0	Parent=Os10t0536000-01
Chr10	irgsp1_rep	three_prime_UTR	20848054	20848300	.	-	.	Parent=Os10t0536000-01
Chr10	irgsp1_rep	mRNA	20848042	20851276	.	-	.	ID=Os10t0536000-02;Name=Os10t0536000-02;Locus_id=Os10g0536000;Oryzabase Gene Symbol Synonym(s)=OsSce1%2C OsUBC1%2C UBC1%2C OsSCE1b%2C SCE1b%2C OsSCE1b.1%2C OsSCE1b.2;Oryzabase Gene Name Synonym(s)=SUMO-conjugating enzyme 1%2C Ubiquitin-conjugating enzyme 1%2C E2 SUMO conjugation enzyme 1b%2C SUMO conjugation enzyme 1b%2C E2 protein SCE1b;Note=Similar to SUMO E2 conjugating enzyme SCE1.;Transcript_evidence=AK105227 (DDBJ%2C Best hit);ORF_evidence=B8BI11 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135),Ubiquitin-conjugating enzyme%2C active site (IPR023313);NIAS_FLcDNA=001-111-C09;Oryzabase=13202;TENOR=Os10t0536000-02
Chr10	irgsp1_rep	five_prime_UTR	20851210	20851276	.	-	.	Parent=Os10t0536000-02
Chr10	irgsp1_rep	CDS	20851141	20851209	.	-	0	Parent=Os10t0536000-02
Chr10	irgsp1_rep	CDS	20850964	20851047	.	-	0	Parent=Os10t0536000-02
Chr10	irgsp1_rep	CDS	20848639	20848791	.	-	0	Parent=Os10t0536000-02
Chr10	irgsp1_rep	CDS	20848450	20848563	.	-	0	Parent=Os10t0536000-02
Chr10	irgsp1_rep	CDS	20848301	20848363	.	-	0	Parent=Os10t0536000-02
Chr10	irgsp1_rep	three_prime_UTR	20848042	20848300	.	-	.	Parent=Os10t0536000-02
Chr10	irgsp1_rep	mRNA	20848638	20851248	.	+	.	ID=Os10t0536050-00;Name=Os10t0536050-00;Locus_id=Os10g0536050;Note=Similar to Ubiquitin conjugating enzyme (Fragment).;Transcript_evidence=U49913 (DDBJ);ORF_evidence=Q41762 (UniProt);TENOR=Os10t0536050-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	20848638	20848677	.	+	.	Parent=Os10t0536050-00
Chr10	irgsp1_rep	CDS	20848678	20848791	.	+	0	Parent=Os10t0536050-00
Chr10	irgsp1_rep	CDS	20850964	20851248	.	+	0	Parent=Os10t0536050-00
Chr10	irgsp1_rep	mRNA	20863187	20873635	.	+	.	ID=Os10t0536100-01;Name=Os10t0536100-01;Locus_id=Os10g0536100;RAP-DB Gene Symbol Synonym(s)=OsMADS56%2C MADS56;RAP-DB Gene Name Synonym(s)=MADS box gene56%2C MADS-box transcription factor 56;CGSNL Gene Symbol=MADS56;CGSNL Gene Name=MADS BOX GENE 56;Oryzabase Gene Symbol Synonym(s)=OsMADS56%2C FDRMADS8%2C RMADS214;Oryzabase Gene Name Synonym(s)=MADS box gene56%2C MADS-box transcription factor 56;Note=MIKC-type MADS-box protein%2C Long day (LD)-specific negative regulator of flowering;Transcript_evidence=AK070135;ORF_evidence=P0C5B2;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Biological Process: positive regulation of transcription from RNA polymerase II promoter (GO:0045944),Molecular Function: RNA polymerase II regulatory region sequence-specific DNA binding (GO:0000977),Molecular Function: DNA binding (GO:0003677),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700),Molecular Function: protein dimerization activity (GO:0046983),Cellular Component: nucleus (GO:0005634);InterPro=Transcription factor%2C MADS-box (IPR002100),MADS MEF2-like (IPR033896),Transcription factor%2C K-box (IPR002487);NIAS_FLcDNA=J023043P08;Manual Curation=July 24%2C 2017;Literature_PMID=19558411;Oryzabase=3105;Expression=AK070135;TENOR=Os10t0536100-01;KEGG=Os10t0536100-01;Subcellular location=nucleus (GO:0005634)
Chr10	irgsp1_rep	five_prime_UTR	20863187	20863354	.	+	.	Parent=Os10t0536100-01
Chr10	irgsp1_rep	five_prime_UTR	20863469	20863579	.	+	.	Parent=Os10t0536100-01
Chr10	irgsp1_rep	CDS	20863580	20863764	.	+	0	Parent=Os10t0536100-01
Chr10	irgsp1_rep	CDS	20870419	20870497	.	+	1	Parent=Os10t0536100-01
Chr10	irgsp1_rep	CDS	20872224	20872285	.	+	0	Parent=Os10t0536100-01
Chr10	irgsp1_rep	CDS	20872385	20872484	.	+	1	Parent=Os10t0536100-01
Chr10	irgsp1_rep	CDS	20872622	20872663	.	+	0	Parent=Os10t0536100-01
Chr10	irgsp1_rep	CDS	20872779	20872820	.	+	0	Parent=Os10t0536100-01
Chr10	irgsp1_rep	CDS	20873133	20873324	.	+	0	Parent=Os10t0536100-01
Chr10	irgsp1_rep	three_prime_UTR	20873325	20873635	.	+	.	Parent=Os10t0536100-01
Chr10	irgsp1_rep	mRNA	20886407	20892109	.	+	.	ID=Os10t0536400-01;Name=Os10t0536400-01;Locus_id=Os10g0536400;CGSNL Gene Symbol=F3H2;CGSNL Gene Name=FLAVANONE 3-HYDROXYLASE 2;Oryzabase Gene Symbol Synonym(s)=OsF3H-2%2C F3H-2%2C OsF3H2;Oryzabase Gene Name Synonym(s)=Flavanone 3-hydroxylase 2;Note=Similar to Oxidoreductase%2C 2OG-Fe oxygenase family protein%2C expressed.;Transcript_evidence=AK061357 (DDBJ%2C Best hit);ORF_evidence=Q7G1T5 (UniProt);NIAS_FLcDNA=006-304-B08;Oryzabase=20379;Expression=AK061357;TENOR=Os10t0536400-01;KEGG=Os10t0536400-01
Chr10	irgsp1_rep	five_prime_UTR	20886407	20886521	.	+	.	Parent=Os10t0536400-01
Chr10	irgsp1_rep	CDS	20886522	20886734	.	+	0	Parent=Os10t0536400-01
Chr10	irgsp1_rep	CDS	20886831	20887078	.	+	0	Parent=Os10t0536400-01
Chr10	irgsp1_rep	CDS	20890580	20890631	.	+	1	Parent=Os10t0536400-01
Chr10	irgsp1_rep	CDS	20891734	20891757	.	+	0	Parent=Os10t0536400-01
Chr10	irgsp1_rep	three_prime_UTR	20891758	20892109	.	+	.	Parent=Os10t0536400-01
Chr10	irgsp1_rep	mRNA	20890567	20891707	.	-	.	ID=Os10t0536450-00;Name=Os10t0536450-00;Locus_id=Os10g0536450;Note=Hypothetical protein.;Transcript_evidence=tplb0008n13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0536450-00
Chr10	irgsp1_rep	five_prime_UTR	20891604	20891707	.	-	.	Parent=Os10t0536450-00
Chr10	irgsp1_rep	CDS	20891485	20891603	.	-	0	Parent=Os10t0536450-00
Chr10	irgsp1_rep	CDS	20890629	20890914	.	-	1	Parent=Os10t0536450-00
Chr10	irgsp1_rep	three_prime_UTR	20890567	20890628	.	-	.	Parent=Os10t0536450-00
Chr10	irgsp1_rep	mRNA	20893685	20895216	.	+	.	ID=Os10t0536500-01;Name=Os10t0536500-01;Locus_id=Os10g0536500;Note=Peptidase S10%2C serine carboxypeptidase%2C active site domain containing protein.;Transcript_evidence=AK066849 (DDBJ%2C Best hit),AK103995 (DDBJ%2C Best hit);ORF_evidence=A2Z9R0 (UniProt);NIAS_FLcDNA=J013075C23,001-018-F12;TENOR=Os10t0536500-01
Chr10	irgsp1_rep	five_prime_UTR	20893685	20893759	.	+	.	Parent=Os10t0536500-01
Chr10	irgsp1_rep	CDS	20893760	20893925	.	+	0	Parent=Os10t0536500-01
Chr10	irgsp1_rep	CDS	20894029	20894138	.	+	2	Parent=Os10t0536500-01
Chr10	irgsp1_rep	CDS	20894215	20894301	.	+	0	Parent=Os10t0536500-01
Chr10	irgsp1_rep	CDS	20894411	20894473	.	+	0	Parent=Os10t0536500-01
Chr10	irgsp1_rep	CDS	20894850	20894887	.	+	0	Parent=Os10t0536500-01
Chr10	irgsp1_rep	CDS	20894982	20895036	.	+	1	Parent=Os10t0536500-01
Chr10	irgsp1_rep	three_prime_UTR	20895037	20895216	.	+	.	Parent=Os10t0536500-01
Chr10	irgsp1_rep	mRNA	20895706	20895936	.	+	.	ID=Os10t0536600-00;Name=Os10t0536600-00;Locus_id=Os10g0536600;Oryzabase Gene Symbol Synonym(s)=prx127;Oryzabase Gene Name Synonym(s)=class III peroxidase 127;Note=Plant peroxidase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2Z9R1 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255);Oryzabase=14643;TENOR=Os10t0536600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	20895706	20895936	.	+	0	Parent=Os10t0536600-00
Chr10	irgsp1_rep	mRNA	20900132	20902329	.	+	.	ID=Os10t0536700-01;Name=Os10t0536700-01;Locus_id=Os10g0536700;Oryzabase Gene Symbol Synonym(s)=prx128;Oryzabase Gene Name Synonym(s)=class III peroxidase 128;Note=Similar to Peroxidase 1.;Transcript_evidence=AK105708 (DDBJ%2C Best hit);ORF_evidence=Q8LMR7 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=001-201-E05;Oryzabase=14644;Expression=AK105708;TENOR=Os10t0536700-01;KEGG=Os10t0536700-01
Chr10	irgsp1_rep	five_prime_UTR	20900132	20900290	.	+	.	Parent=Os10t0536700-01
Chr10	irgsp1_rep	CDS	20900291	20900524	.	+	0	Parent=Os10t0536700-01
Chr10	irgsp1_rep	CDS	20900625	20900813	.	+	0	Parent=Os10t0536700-01
Chr10	irgsp1_rep	CDS	20901491	20902084	.	+	0	Parent=Os10t0536700-01
Chr10	irgsp1_rep	three_prime_UTR	20902085	20902329	.	+	.	Parent=Os10t0536700-01
Chr10	irgsp1_rep	mRNA	20900293	20902079	.	-	.	ID=Os10t0536900-00;Name=Os10t0536900-00;Locus_id=Os10g0536900;Note=Hypothetical protein.;Transcript_evidence=tplb0030i03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0536900-00
Chr10	irgsp1_rep	five_prime_UTR	20901892	20902079	.	-	.	Parent=Os10t0536900-00
Chr10	irgsp1_rep	CDS	20901493	20901891	.	-	0	Parent=Os10t0536900-00
Chr10	irgsp1_rep	CDS	20900619	20900810	.	-	0	Parent=Os10t0536900-00
Chr10	irgsp1_rep	CDS	20900293	20900518	.	-	0	Parent=Os10t0536900-00
Chr10	irgsp1_rep	mRNA	20916158	20917158	.	-	.	ID=Os10t0537100-00;Name=Os10t0537100-00;Locus_id=Os10g0537100;Note=Hypothetical conserved gene.;Transcript_evidence=FP096459 (DDBJ);ORF_evidence=Q8LNN8 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);Oryzabase=22353,22354;TENOR=Os10t0537100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	20917100	20917158	.	-	.	Parent=Os10t0537100-00
Chr10	irgsp1_rep	CDS	20916161	20917099	.	-	0	Parent=Os10t0537100-00
Chr10	irgsp1_rep	three_prime_UTR	20916158	20916160	.	-	.	Parent=Os10t0537100-00
Chr10	irgsp1_rep	mRNA	20929638	20934582	.	-	.	ID=Os10t0537300-01;Name=Os10t0537300-01;Locus_id=Os10g0537300;Note=Conserved hypothetical protein.;Transcript_evidence=AK068850 (DDBJ%2C Best hit);ORF_evidence=A2Z9R4 (UniProt);NIAS_FLcDNA=J013169H09;Expression=AK068850;TENOR=Os10t0537300-01;KEGG=Os10t0537300-01
Chr10	irgsp1_rep	five_prime_UTR	20934549	20934582	.	-	.	Parent=Os10t0537300-01
Chr10	irgsp1_rep	CDS	20934254	20934548	.	-	0	Parent=Os10t0537300-01
Chr10	irgsp1_rep	CDS	20931737	20933307	.	-	2	Parent=Os10t0537300-01
Chr10	irgsp1_rep	CDS	20931374	20931472	.	-	0	Parent=Os10t0537300-01
Chr10	irgsp1_rep	CDS	20931101	20931272	.	-	0	Parent=Os10t0537300-01
Chr10	irgsp1_rep	CDS	20929855	20931008	.	-	2	Parent=Os10t0537300-01
Chr10	irgsp1_rep	three_prime_UTR	20929638	20929854	.	-	.	Parent=Os10t0537300-01
Chr10	irgsp1_rep	mRNA	20935118	20935819	.	+	.	ID=Os10t0537400-00;Name=Os10t0537400-00;Locus_id=Os10g0537400;CGSNL Gene Symbol=HMP44;CGSNL Gene Name=HEAVY METAL-ASSOCIATED PROTEIN 44;Oryzabase Gene Symbol Synonym(s)=OsHMP44;Oryzabase Gene Name Synonym(s)=Heavy metal-associated protein 44;Note=Similar to metal ion binding protein.;Transcript_evidence=AK366348 (DDBJ);ORF_evidence=B6T4Q0 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);Oryzabase=23559;TENOR=Os10t0537400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	20935118	20935352	.	+	0	Parent=Os10t0537400-00
Chr10	irgsp1_rep	CDS	20935467	20935789	.	+	2	Parent=Os10t0537400-00
Chr10	irgsp1_rep	three_prime_UTR	20935790	20935819	.	+	.	Parent=Os10t0537400-00
Chr10	irgsp1_rep	mRNA	20936565	20940351	.	-	.	ID=Os10t0537450-00;Name=Os10t0537450-00;Locus_id=Os10g0537450;Note=Hypothetical protein.;Transcript_evidence=tplb0046l08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0537450-00
Chr10	irgsp1_rep	five_prime_UTR	20940095	20940351	.	-	.	Parent=Os10t0537450-00
Chr10	irgsp1_rep	five_prime_UTR	20939651	20939711	.	-	.	Parent=Os10t0537450-00
Chr10	irgsp1_rep	five_prime_UTR	20939509	20939565	.	-	.	Parent=Os10t0537450-00
Chr10	irgsp1_rep	five_prime_UTR	20939323	20939419	.	-	.	Parent=Os10t0537450-00
Chr10	irgsp1_rep	five_prime_UTR	20938354	20938454	.	-	.	Parent=Os10t0537450-00
Chr10	irgsp1_rep	five_prime_UTR	20937664	20937725	.	-	.	Parent=Os10t0537450-00
Chr10	irgsp1_rep	five_prime_UTR	20937450	20937583	.	-	.	Parent=Os10t0537450-00
Chr10	irgsp1_rep	five_prime_UTR	20937221	20937257	.	-	.	Parent=Os10t0537450-00
Chr10	irgsp1_rep	CDS	20937154	20937220	.	-	0	Parent=Os10t0537450-00
Chr10	irgsp1_rep	CDS	20936565	20936902	.	-	2	Parent=Os10t0537450-00
Chr10	irgsp1_rep	mRNA	20936570	20940422	.	+	.	ID=Os10t0537500-01;Name=Os10t0537500-01;Locus_id=Os10g0537500;Note=Similar to Tobamovirus multiplication 3.;Transcript_evidence=AK061395 (DDBJ%2C Best hit),AK101318 (DDBJ%2C Best hit);ORF_evidence=Q402F3 (UniProt);InterPro=Domain of unknown function DUF1084 (IPR009457);NIAS_FLcDNA=006-305-E02,J033034D12;TENOR=Os10t0537500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	20936570	20936735	.	+	.	Parent=Os10t0537500-01
Chr10	irgsp1_rep	CDS	20936736	20936903	.	+	0	Parent=Os10t0537500-01
Chr10	irgsp1_rep	CDS	20937155	20937245	.	+	0	Parent=Os10t0537500-01
Chr10	irgsp1_rep	CDS	20937349	20937401	.	+	2	Parent=Os10t0537500-01
Chr10	irgsp1_rep	CDS	20937488	20937580	.	+	0	Parent=Os10t0537500-01
Chr10	irgsp1_rep	CDS	20937667	20937738	.	+	0	Parent=Os10t0537500-01
Chr10	irgsp1_rep	CDS	20938360	20938432	.	+	0	Parent=Os10t0537500-01
Chr10	irgsp1_rep	CDS	20938816	20938861	.	+	2	Parent=Os10t0537500-01
Chr10	irgsp1_rep	CDS	20939347	20939410	.	+	1	Parent=Os10t0537500-01
Chr10	irgsp1_rep	CDS	20939495	20939548	.	+	0	Parent=Os10t0537500-01
Chr10	irgsp1_rep	CDS	20939637	20939714	.	+	0	Parent=Os10t0537500-01
Chr10	irgsp1_rep	CDS	20940098	20940190	.	+	0	Parent=Os10t0537500-01
Chr10	irgsp1_rep	three_prime_UTR	20940191	20940422	.	+	.	Parent=Os10t0537500-01
Chr10	irgsp1_rep	mRNA	20940762	20945224	.	-	.	ID=Os10t0537600-01;Name=Os10t0537600-01;Locus_id=Os10g0537600;Note=Conserved hypothetical protein.;Transcript_evidence=AK103560 (DDBJ%2C Best hit);ORF_evidence=Q8LNN4 (UniProt);NIAS_FLcDNA=J033132J12;Expression=AK103560;TENOR=Os10t0537600-01;KEGG=Os10t0537600-01
Chr10	irgsp1_rep	five_prime_UTR	20945223	20945224	.	-	.	Parent=Os10t0537600-01
Chr10	irgsp1_rep	CDS	20944392	20945222	.	-	0	Parent=Os10t0537600-01
Chr10	irgsp1_rep	CDS	20943942	20944269	.	-	0	Parent=Os10t0537600-01
Chr10	irgsp1_rep	CDS	20943036	20943291	.	-	2	Parent=Os10t0537600-01
Chr10	irgsp1_rep	CDS	20942765	20942945	.	-	1	Parent=Os10t0537600-01
Chr10	irgsp1_rep	CDS	20940987	20942348	.	-	0	Parent=Os10t0537600-01
Chr10	irgsp1_rep	three_prime_UTR	20940762	20940986	.	-	.	Parent=Os10t0537600-01
Chr10	irgsp1_rep	mRNA	20956884	20958287	.	+	.	ID=Os10t0537800-01;Name=Os10t0537800-01;Locus_id=Os10g0537800;Note=Peptidase aspartic%2C catalytic domain containing protein.;Transcript_evidence=AK061277 (DDBJ%2C Best hit);ORF_evidence=NP_001065177.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=006-212-F01;Expression=AK061277;TENOR=Os10t0537800-01;KEGG=Os10t0537800-01
Chr10	irgsp1_rep	five_prime_UTR	20956884	20956945	.	+	.	Parent=Os10t0537800-01
Chr10	irgsp1_rep	CDS	20956946	20958130	.	+	0	Parent=Os10t0537800-01
Chr10	irgsp1_rep	three_prime_UTR	20958131	20958287	.	+	.	Parent=Os10t0537800-01
Chr10	irgsp1_rep	mRNA	20971240	20972640	.	+	.	ID=Os10t0538200-01;Name=Os10t0538200-01;Locus_id=Os10g0538200;Note=Peptidase aspartic%2C catalytic domain containing protein.;Transcript_evidence=AK061045 (DDBJ%2C Best hit);ORF_evidence=Q2QSI0 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=006-205-E10;Expression=AK061045;TENOR=Os10t0538200-01;KEGG=Os10t0538200-01
Chr10	irgsp1_rep	five_prime_UTR	20971240	20971303	.	+	.	Parent=Os10t0538200-01
Chr10	irgsp1_rep	CDS	20971304	20972488	.	+	0	Parent=Os10t0538200-01
Chr10	irgsp1_rep	three_prime_UTR	20972489	20972640	.	+	.	Parent=Os10t0538200-01
Chr10	irgsp1_rep	mRNA	20983108	20984272	.	-	.	ID=Os10t0538450-00;Name=Os10t0538450-00;Locus_id=Os10g0538450;Note=Hypothetical protein.;Transcript_evidence=AK360759 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0538450-00
Chr10	irgsp1_rep	five_prime_UTR	20984222	20984272	.	-	.	Parent=Os10t0538450-00
Chr10	irgsp1_rep	CDS	20983607	20984221	.	-	0	Parent=Os10t0538450-00
Chr10	irgsp1_rep	three_prime_UTR	20983108	20983606	.	-	.	Parent=Os10t0538450-00
Chr10	irgsp1_rep	mRNA	20987786	20995002	.	-	.	ID=Os10t0538600-00;Name=Os10t0538600-00;Locus_id=Os10g0538600;Note=Hypothetical protein.;Transcript_evidence=EU943155 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0538600-00
Chr10	irgsp1_rep	five_prime_UTR	20994481	20995002	.	-	.	Parent=Os10t0538600-00
Chr10	irgsp1_rep	CDS	20994166	20994480	.	-	0	Parent=Os10t0538600-00
Chr10	irgsp1_rep	three_prime_UTR	20993779	20994165	.	-	.	Parent=Os10t0538600-00
Chr10	irgsp1_rep	three_prime_UTR	20987786	20987936	.	-	.	Parent=Os10t0538600-00
Chr10	irgsp1_rep	mRNA	20997527	20998560	.	-	.	ID=Os10t0538950-00;Name=Os10t0538950-00;Locus_id=Os10g0538950;Note=Hypothetical protein.;Transcript_evidence=EU943155 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0538950-00
Chr10	irgsp1_rep	five_prime_UTR	20998502	20998560	.	-	.	Parent=Os10t0538950-00
Chr10	irgsp1_rep	CDS	20997914	20998501	.	-	0	Parent=Os10t0538950-00
Chr10	irgsp1_rep	three_prime_UTR	20997527	20997913	.	-	.	Parent=Os10t0538950-00
Chr10	irgsp1_rep	mRNA	21008520	21010089	.	+	.	ID=Os10t0539200-00;Name=Os10t0539200-00;Locus_id=Os10g0539200;Note=Hypothetical conserved gene.;Transcript_evidence=CT837888 (DDBJ%2C Best hit);ORF_evidence=Q8LNL9 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);TENOR=Os10t0539200-00;KEGG=Os10t0539200-00
Chr10	irgsp1_rep	five_prime_UTR	21008520	21008596	.	+	.	Parent=Os10t0539200-00
Chr10	irgsp1_rep	CDS	21008597	21009823	.	+	0	Parent=Os10t0539200-00
Chr10	irgsp1_rep	three_prime_UTR	21009824	21010089	.	+	.	Parent=Os10t0539200-00
Chr10	irgsp1_rep	mRNA	21013766	21015048	.	-	.	ID=Os10t0539350-01;Name=Os10t0539350-01;Locus_id=Os10g0539350;Note=Non-protein coding transcript.;Transcript_evidence=AK242144 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J075150K13;TENOR=Os10t0539350-01
Chr10	irgsp1_rep	exon	21013766	21015048	.	-	.	Parent=Os10t0539350-01
Chr10	irgsp1_rep	mRNA	21016611	21018345	.	-	.	ID=Os10t0539400-01;Name=Os10t0539400-01;Locus_id=Os10g0539400;Note=Similar to MCE-FAMILY PROTEIN MCE2C.;Transcript_evidence=AK071222 (DDBJ%2C Best hit);ORF_evidence=A2Z9S8 (UniProt);NIAS_FLcDNA=J023085I16;Expression=AK071222;TENOR=Os10t0539400-01;KEGG=Os10t0539400-01
Chr10	irgsp1_rep	five_prime_UTR	21017948	21018345	.	-	.	Parent=Os10t0539400-01
Chr10	irgsp1_rep	CDS	21016892	21017947	.	-	0	Parent=Os10t0539400-01
Chr10	irgsp1_rep	three_prime_UTR	21016611	21016891	.	-	.	Parent=Os10t0539400-01
Chr10	irgsp1_rep	mRNA	21019357	21019902	.	-	.	ID=Os10t0539500-01;Name=Os10t0539500-01;Locus_id=Os10g0539500;Oryzabase Gene Symbol Synonym(s)=H4;Oryzabase Gene Name Synonym(s)=Histone H4;Note=Similar to Histone H4.;Transcript_evidence=AK119699 (DDBJ%2C Best hit),AK059098 (DDBJ%2C Best hit);ORF_evidence=XP_002310853.1 (RefSeq);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H4 (IPR001951),Histone core (IPR007125),Histone-fold (IPR009072),Histone H4%2C conserved site (IPR019809);NIAS_FLcDNA=002-157-D04,001-022-C07;Oryzabase=15721;Expression=AK119699;TENOR=Os10t0539500-01;KEGG=Os10t0539500-01
Chr10	irgsp1_rep	five_prime_UTR	21019830	21019902	.	-	.	Parent=Os10t0539500-01
Chr10	irgsp1_rep	CDS	21019518	21019829	.	-	0	Parent=Os10t0539500-01
Chr10	irgsp1_rep	three_prime_UTR	21019357	21019517	.	-	.	Parent=Os10t0539500-01
Chr10	irgsp1_rep	mRNA	21027467	21032216	.	+	.	ID=Os10t0539600-01;Name=Os10t0539600-01;Locus_id=Os10g0539600;CGSNL Gene Symbol=SPK;CGSNL Gene Name=SEED-SPECIFIC PROTEIN KINASE;Oryzabase Gene Symbol Synonym(s)=CDPK 1%2C CDPK1%2C CDPK23%2C OsCDPK23%2C OsCPK23;Oryzabase Gene Name Synonym(s)=seed-specific protein kinase%2C "Calcium-dependent protein kinase%2C isoform 1"%2C Calcium-dependent protein kinase isoform 1%2C calcium-dependent protein kinase 23;Note=Similar to Calcium-dependent protein kinase 3.;Transcript_evidence=AK065456 (DDBJ%2C Best hit);ORF_evidence=P53682 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Calcium-binding EF-hand (IPR002048),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),EF-hand-like domain (IPR011992),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013025D11;Oryzabase=3028;Expression=AK065456;TENOR=Os10t0539600-01;KEGG=Os10t0539600-01 (EC:2.7.11.17)
Chr10	irgsp1_rep	five_prime_UTR	21027467	21027607	.	+	.	Parent=Os10t0539600-01
Chr10	irgsp1_rep	five_prime_UTR	21028188	21028206	.	+	.	Parent=Os10t0539600-01
Chr10	irgsp1_rep	CDS	21028207	21028888	.	+	0	Parent=Os10t0539600-01
Chr10	irgsp1_rep	CDS	21029222	21029365	.	+	2	Parent=Os10t0539600-01
Chr10	irgsp1_rep	CDS	21029448	21029600	.	+	2	Parent=Os10t0539600-01
Chr10	irgsp1_rep	CDS	21029778	21029893	.	+	2	Parent=Os10t0539600-01
Chr10	irgsp1_rep	CDS	21030530	21030694	.	+	0	Parent=Os10t0539600-01
Chr10	irgsp1_rep	CDS	21030996	21031217	.	+	0	Parent=Os10t0539600-01
Chr10	irgsp1_rep	CDS	21031787	21031909	.	+	0	Parent=Os10t0539600-01
Chr10	irgsp1_rep	three_prime_UTR	21031910	21032216	.	+	.	Parent=Os10t0539600-01
Chr10	irgsp1_rep	mRNA	21031774	21032701	.	-	.	ID=Os10t0539650-01;Name=Os10t0539650-01;Locus_id=Os10g0539650;Note=Hypothetical gene.;Transcript_evidence=AK243132 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100030B08;TENOR=Os10t0539650-01;KEGG=Os10t0539650-01
Chr10	irgsp1_rep	five_prime_UTR	21032670	21032701	.	-	.	Parent=Os10t0539650-01
Chr10	irgsp1_rep	CDS	21032439	21032669	.	-	0	Parent=Os10t0539650-01
Chr10	irgsp1_rep	three_prime_UTR	21031774	21032438	.	-	.	Parent=Os10t0539650-01
Chr10	irgsp1_rep	mRNA	21036241	21039023	.	+	.	ID=Os10t0539700-01;Name=Os10t0539700-01;Locus_id=Os10g0539700;Note=Conserved hypothetical protein.;Transcript_evidence=AK120628 (DDBJ%2C Best hit);ORF_evidence=Q9FRK1 (UniProt);NIAS_FLcDNA=J013153C17;Expression=AK120628;TENOR=Os10t0539700-01;KEGG=Os10t0539700-01
Chr10	irgsp1_rep	five_prime_UTR	21036241	21036276	.	+	.	Parent=Os10t0539700-01
Chr10	irgsp1_rep	CDS	21036277	21038775	.	+	0	Parent=Os10t0539700-01
Chr10	irgsp1_rep	three_prime_UTR	21038776	21039023	.	+	.	Parent=Os10t0539700-01
Chr10	irgsp1_rep	mRNA	21048303	21052558	.	+	.	ID=Os10t0539900-01;Name=Os10t0539900-01;Locus_id=Os10g0539900;RAP-DB Gene Symbol Synonym(s)=TMT1%2C OsTMT1;RAP-DB Gene Name Synonym(s)=TONOPLAST MONOSACCHARIDE TRANSPORTER 1;CGSNL Gene Symbol=TMT1;CGSNL Gene Name=TONOPLAST MONOSACCHARIDE TRANSPORTER 1;Oryzabase Gene Symbol Synonym(s)=OsTMT1;Note=Tonoplast monosaccharide transpoter%2C Vacuolar sugar transport;Transcript_evidence=GU066765 (Genbank),AK102640 (Genbank);ORF_evidence=Q9FRK0 (UniProt),Q336W8 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J033100A10;Manual Curation=May 14%2C 2010;Literature_PMID=20202129;Oryzabase=10291;Expression=AK102640;TENOR=Os10t0539900-01;KEGG=Os10t0539900-01
Chr10	irgsp1_rep	five_prime_UTR	21048303	21048487	.	+	.	Parent=Os10t0539900-01
Chr10	irgsp1_rep	five_prime_UTR	21048682	21048699	.	+	.	Parent=Os10t0539900-01
Chr10	irgsp1_rep	CDS	21048700	21048778	.	+	0	Parent=Os10t0539900-01
Chr10	irgsp1_rep	CDS	21049170	21049736	.	+	2	Parent=Os10t0539900-01
Chr10	irgsp1_rep	CDS	21049861	21050813	.	+	2	Parent=Os10t0539900-01
Chr10	irgsp1_rep	CDS	21051466	21051653	.	+	0	Parent=Os10t0539900-01
Chr10	irgsp1_rep	CDS	21051752	21052187	.	+	1	Parent=Os10t0539900-01
Chr10	irgsp1_rep	three_prime_UTR	21052188	21052558	.	+	.	Parent=Os10t0539900-01
Chr10	irgsp1_rep	mRNA	21049251	21052491	.	+	.	ID=Os10t0539900-02;Name=Os10t0539900-02;Locus_id=Os10g0539900;CGSNL Gene Symbol=TMT1;CGSNL Gene Name=TONOPLAST MONOSACCHARIDE TRANSPORTER 1;Oryzabase Gene Symbol Synonym(s)=OsTMT1;Note=Similar to Hexose transporter.;Transcript_evidence=AK065191 (DDBJ%2C Best hit);ORF_evidence=B6U6U2 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J013002E10;Oryzabase=10291;Expression=AK065191;TENOR=Os10t0539900-02;KEGG=Os10t0539900-02
Chr10	irgsp1_rep	five_prime_UTR	21049251	21049252	.	+	.	Parent=Os10t0539900-02
Chr10	irgsp1_rep	CDS	21049253	21049736	.	+	0	Parent=Os10t0539900-02
Chr10	irgsp1_rep	CDS	21049861	21050813	.	+	2	Parent=Os10t0539900-02
Chr10	irgsp1_rep	CDS	21051466	21051653	.	+	0	Parent=Os10t0539900-02
Chr10	irgsp1_rep	CDS	21051752	21052187	.	+	1	Parent=Os10t0539900-02
Chr10	irgsp1_rep	three_prime_UTR	21052188	21052491	.	+	.	Parent=Os10t0539900-02
Chr10	irgsp1_rep	mRNA	21049581	21052560	.	+	.	ID=Os10t0539900-03;Name=Os10t0539900-03;Locus_id=Os10g0539900;CGSNL Gene Symbol=TMT1;CGSNL Gene Name=TONOPLAST MONOSACCHARIDE TRANSPORTER 1;Oryzabase Gene Symbol Synonym(s)=OsTMT1;Note=Similar to Hexose transporter.;Transcript_evidence=AK059705 (DDBJ%2C Best hit);ORF_evidence=B6U6U2 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transmembrane transporter activity (GO:0022857);InterPro=General substrate transporter (IPR005828);NIAS_FLcDNA=001-032-D08;Oryzabase=10291;Expression=AK059705;TENOR=Os10t0539900-03;KEGG=Os10t0539900-03
Chr10	irgsp1_rep	five_prime_UTR	21049581	21049582	.	+	.	Parent=Os10t0539900-03
Chr10	irgsp1_rep	CDS	21049583	21049736	.	+	0	Parent=Os10t0539900-03
Chr10	irgsp1_rep	CDS	21049861	21050520	.	+	2	Parent=Os10t0539900-03
Chr10	irgsp1_rep	CDS	21051752	21051783	.	+	2	Parent=Os10t0539900-03
Chr10	irgsp1_rep	three_prime_UTR	21051784	21052560	.	+	.	Parent=Os10t0539900-03
Chr10	irgsp1_rep	mRNA	21050202	21052514	.	+	.	ID=Os10t0539900-04;Name=Os10t0539900-04;Locus_id=Os10g0539900;CGSNL Gene Symbol=TMT1;CGSNL Gene Name=TONOPLAST MONOSACCHARIDE TRANSPORTER 1;Oryzabase Gene Symbol Synonym(s)=OsTMT1;Note=Similar to Hexose transporter.;Transcript_evidence=AK067391 (DDBJ%2C Best hit);ORF_evidence=Q8GT52 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J013106M11;Oryzabase=10291;Expression=AK067391;TENOR=Os10t0539900-04;KEGG=Os10t0539900-04
Chr10	irgsp1_rep	CDS	21050202	21050813	.	+	0	Parent=Os10t0539900-04
Chr10	irgsp1_rep	CDS	21051466	21051653	.	+	0	Parent=Os10t0539900-04
Chr10	irgsp1_rep	CDS	21051752	21052187	.	+	1	Parent=Os10t0539900-04
Chr10	irgsp1_rep	three_prime_UTR	21052188	21052514	.	+	.	Parent=Os10t0539900-04
Chr10	irgsp1_rep	mRNA	21048688	21052152	.	-	.	ID=Os10t0539950-00;Name=Os10t0539950-00;Locus_id=Os10g0539950;Note=Hypothetical protein.;Transcript_evidence=tplb0022b17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0539950-00
Chr10	irgsp1_rep	five_prime_UTR	21051793	21052152	.	-	.	Parent=Os10t0539950-00
Chr10	irgsp1_rep	five_prime_UTR	21051449	21051698	.	-	.	Parent=Os10t0539950-00
Chr10	irgsp1_rep	five_prime_UTR	21050547	21050804	.	-	.	Parent=Os10t0539950-00
Chr10	irgsp1_rep	CDS	21050348	21050546	.	-	0	Parent=Os10t0539950-00
Chr10	irgsp1_rep	CDS	21050093	21050250	.	-	2	Parent=Os10t0539950-00
Chr10	irgsp1_rep	three_prime_UTR	21049858	21050092	.	-	.	Parent=Os10t0539950-00
Chr10	irgsp1_rep	three_prime_UTR	21049202	21049733	.	-	.	Parent=Os10t0539950-00
Chr10	irgsp1_rep	three_prime_UTR	21048688	21048807	.	-	.	Parent=Os10t0539950-00
Chr10	irgsp1_rep	mRNA	21055287	21056361	.	-	.	ID=Os10t0540000-01;Name=Os10t0540000-01;Locus_id=Os10g0540000;Note=Similar to Zinc finger%2C C3HC4 type family protein%2C expressed.;Transcript_evidence=AK063094 (DDBJ%2C Best hit);ORF_evidence=Q7XCM8 (UniProt);NIAS_FLcDNA=001-111-B05;Expression=AK063094;TENOR=Os10t0540000-01;KEGG=Os10t0540000-01
Chr10	irgsp1_rep	five_prime_UTR	21056361	21056361	.	-	.	Parent=Os10t0540000-01
Chr10	irgsp1_rep	CDS	21056244	21056360	.	-	0	Parent=Os10t0540000-01
Chr10	irgsp1_rep	CDS	21055439	21055612	.	-	0	Parent=Os10t0540000-01
Chr10	irgsp1_rep	three_prime_UTR	21055287	21055438	.	-	.	Parent=Os10t0540000-01
Chr10	irgsp1_rep	mRNA	21055352	21056227	.	+	.	ID=Os10t0540050-00;Name=Os10t0540050-00;Locus_id=Os10g0540050;Note=Conserved hypothetical protein.;Transcript_evidence=EU972599 (DDBJ);ORF_evidence=A3C6X5 (UniProt);TENOR=Os10t0540050-00
Chr10	irgsp1_rep	CDS	21055352	21056227	.	+	0	Parent=Os10t0540050-00
Chr10	irgsp1_rep	mRNA	21058117	21061300	.	-	.	ID=Os10t0540100-01;Name=Os10t0540100-01;Locus_id=Os10g0540100;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK074016 (DDBJ%2C Best hit);ORF_evidence=Q9FRJ8 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033073G21;Expression=AK074016;TENOR=Os10t0540100-01;KEGG=Os10t0540100-01
Chr10	irgsp1_rep	five_prime_UTR	21061281	21061300	.	-	.	Parent=Os10t0540100-01
Chr10	irgsp1_rep	CDS	21059235	21061280	.	-	0	Parent=Os10t0540100-01
Chr10	irgsp1_rep	three_prime_UTR	21059230	21059234	.	-	.	Parent=Os10t0540100-01
Chr10	irgsp1_rep	three_prime_UTR	21058624	21059103	.	-	.	Parent=Os10t0540100-01
Chr10	irgsp1_rep	three_prime_UTR	21058117	21058510	.	-	.	Parent=Os10t0540100-01
Chr10	irgsp1_rep	mRNA	21059208	21064578	.	+	.	ID=Os10t0540200-01;Name=Os10t0540200-01;Locus_id=Os10g0540200;Note=Similar to Selenium-binding protein-like.;Transcript_evidence=AK106808 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-116-C07;Expression=AK106808;TENOR=Os10t0540200-01;KEGG=Os10t0540200-01
Chr10	irgsp1_rep	five_prime_UTR	21059208	21059216	.	+	.	Parent=Os10t0540200-01
Chr10	irgsp1_rep	CDS	21059217	21059486	.	+	0	Parent=Os10t0540200-01
Chr10	irgsp1_rep	CDS	21059711	21059875	.	+	0	Parent=Os10t0540200-01
Chr10	irgsp1_rep	three_prime_UTR	21059876	21061330	.	+	.	Parent=Os10t0540200-01
Chr10	irgsp1_rep	three_prime_UTR	21061504	21061594	.	+	.	Parent=Os10t0540200-01
Chr10	irgsp1_rep	three_prime_UTR	21064271	21064578	.	+	.	Parent=Os10t0540200-01
Chr10	irgsp1_rep	mRNA	21065233	21065655	.	-	.	ID=Os10t0540250-01;Name=Os10t0540250-01;Locus_id=Os10g0540250;Note=Non-protein coding transcript.;Transcript_evidence=AK242425 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080087B15;TENOR=Os10t0540250-01
Chr10	irgsp1_rep	exon	21065233	21065655	.	-	.	Parent=Os10t0540250-01
Chr10	irgsp1_rep	mRNA	21066730	21074774	.	+	.	ID=Os10t0540300-01;Name=Os10t0540300-01;Locus_id=Os10g0540300;Note=Protein of unknown function DUF3615 domain containing protein.;Transcript_evidence=AK066440 (DDBJ%2C Best hit);ORF_evidence=Q9FRJ7 (UniProt);InterPro=Protein of unknown function DUF3615 (IPR022059);NIAS_FLcDNA=J013066A01;Expression=AK066440;TENOR=Os10t0540300-01;KEGG=Os10t0540300-01
Chr10	irgsp1_rep	five_prime_UTR	21066730	21069095	.	+	.	Parent=Os10t0540300-01
Chr10	irgsp1_rep	CDS	21069096	21069211	.	+	0	Parent=Os10t0540300-01
Chr10	irgsp1_rep	CDS	21071818	21071874	.	+	1	Parent=Os10t0540300-01
Chr10	irgsp1_rep	CDS	21073305	21073370	.	+	1	Parent=Os10t0540300-01
Chr10	irgsp1_rep	CDS	21073869	21074100	.	+	1	Parent=Os10t0540300-01
Chr10	irgsp1_rep	CDS	21074207	21074411	.	+	0	Parent=Os10t0540300-01
Chr10	irgsp1_rep	CDS	21074509	21074615	.	+	2	Parent=Os10t0540300-01
Chr10	irgsp1_rep	three_prime_UTR	21074616	21074774	.	+	.	Parent=Os10t0540300-01
Chr10	irgsp1_rep	mRNA	21068907	21074892	.	+	.	ID=Os10t0540300-02;Name=Os10t0540300-02;Locus_id=Os10g0540300;Note=Protein of unknown function DUF3615 domain containing protein.;Transcript_evidence=AK061781 (DDBJ%2C Best hit),AK099148 (DDBJ%2C Best hit);ORF_evidence=Q9FRJ7 (UniProt);InterPro=Protein of unknown function DUF3615 (IPR022059);NIAS_FLcDNA=001-039-E02,J023055M03;Expression=AK061781;TENOR=Os10t0540300-02;KEGG=Os10t0540300-02
Chr10	irgsp1_rep	five_prime_UTR	21068907	21069095	.	+	.	Parent=Os10t0540300-02
Chr10	irgsp1_rep	CDS	21069096	21069211	.	+	0	Parent=Os10t0540300-02
Chr10	irgsp1_rep	CDS	21071818	21071874	.	+	1	Parent=Os10t0540300-02
Chr10	irgsp1_rep	CDS	21073305	21073370	.	+	1	Parent=Os10t0540300-02
Chr10	irgsp1_rep	CDS	21073869	21074100	.	+	1	Parent=Os10t0540300-02
Chr10	irgsp1_rep	CDS	21074207	21074411	.	+	0	Parent=Os10t0540300-02
Chr10	irgsp1_rep	CDS	21074509	21074615	.	+	2	Parent=Os10t0540300-02
Chr10	irgsp1_rep	three_prime_UTR	21074616	21074892	.	+	.	Parent=Os10t0540300-02
Chr10	irgsp1_rep	mRNA	21087492	21089381	.	-	.	ID=Os10t0540550-00;Name=Os10t0540550-00;Locus_id=Os10g0540550;Note=Non-protein coding transcript.;Transcript_evidence=CT835796 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os10t0540550-00
Chr10	irgsp1_rep	exon	21089032	21089381	.	-	.	Parent=Os10t0540550-00
Chr10	irgsp1_rep	exon	21087955	21088025	.	-	.	Parent=Os10t0540550-00
Chr10	irgsp1_rep	exon	21087492	21087703	.	-	.	Parent=Os10t0540550-00
Chr10	irgsp1_rep	mRNA	21091977	21096586	.	+	.	ID=Os10t0540800-01;Name=Os10t0540800-01;Locus_id=Os10g0540800;Note=Conserved hypothetical protein.;Transcript_evidence=AK069597 (DDBJ%2C Best hit);ORF_evidence=A2Z9U2 (UniProt);NIAS_FLcDNA=J023024H07;TENOR=Os10t0540800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	21091977	21092312	.	+	.	Parent=Os10t0540800-01
Chr10	irgsp1_rep	five_prime_UTR	21092599	21092696	.	+	.	Parent=Os10t0540800-01
Chr10	irgsp1_rep	CDS	21092697	21092710	.	+	0	Parent=Os10t0540800-01
Chr10	irgsp1_rep	CDS	21092807	21093386	.	+	1	Parent=Os10t0540800-01
Chr10	irgsp1_rep	CDS	21093497	21094558	.	+	0	Parent=Os10t0540800-01
Chr10	irgsp1_rep	CDS	21094805	21094987	.	+	0	Parent=Os10t0540800-01
Chr10	irgsp1_rep	CDS	21095286	21095373	.	+	0	Parent=Os10t0540800-01
Chr10	irgsp1_rep	CDS	21095459	21095706	.	+	2	Parent=Os10t0540800-01
Chr10	irgsp1_rep	CDS	21095886	21096272	.	+	0	Parent=Os10t0540800-01
Chr10	irgsp1_rep	three_prime_UTR	21096273	21096586	.	+	.	Parent=Os10t0540800-01
Chr10	irgsp1_rep	mRNA	21105109	21108901	.	+	.	ID=Os10t0540900-01;Name=Os10t0540900-01;Locus_id=Os10g0540900;Note=Inorganic pyrophosphatase domain containing protein.;Transcript_evidence=AK099294 (DDBJ%2C Best hit),AK072078 (DDBJ%2C Best hit);ORF_evidence=NP_001065186.1 (RefSeq);InterPro=Protein of unknown function DUF3615 (IPR022059);NIAS_FLcDNA=J023135N08,J013116K12;Expression=AK099294;TENOR=Os10t0540900-01;KEGG=Os10t0540900-01
Chr10	irgsp1_rep	five_prime_UTR	21105109	21105395	.	+	.	Parent=Os10t0540900-01
Chr10	irgsp1_rep	CDS	21105396	21105484	.	+	0	Parent=Os10t0540900-01
Chr10	irgsp1_rep	CDS	21107323	21107560	.	+	1	Parent=Os10t0540900-01
Chr10	irgsp1_rep	CDS	21107665	21107926	.	+	0	Parent=Os10t0540900-01
Chr10	irgsp1_rep	CDS	21108024	21108226	.	+	2	Parent=Os10t0540900-01
Chr10	irgsp1_rep	CDS	21108321	21108549	.	+	0	Parent=Os10t0540900-01
Chr10	irgsp1_rep	CDS	21108647	21108753	.	+	2	Parent=Os10t0540900-01
Chr10	irgsp1_rep	three_prime_UTR	21108754	21108901	.	+	.	Parent=Os10t0540900-01
Chr10	irgsp1_rep	mRNA	21109457	21114148	.	-	.	ID=Os10t0541000-01;Name=Os10t0541000-01;Locus_id=Os10g0541000;CGSNL Gene Symbol=MLO_;CGSNL Gene Name=POWDERY-MILDEW-RESISTANCE GENE O_;Oryzabase Gene Symbol Synonym(s)=OsMLO4%2C OsMLO1%2C MLO1;Oryzabase Gene Name Synonym(s)=powdery-MiLdew-resistance gene O1%2C powdery-MiLdew-resistance gene O4%2C Mildew resistance Locus O-1;Note=Similar to Seven transmembrane protein Mlo2.;Transcript_evidence=AK072272 (DDBJ%2C Best hit);ORF_evidence=NP_001105168.1 (RefSeq);GO=Biological Process: cell death (GO:0008219),Cellular Component: integral to membrane (GO:0016021);InterPro=Mlo-related protein (IPR004326);NIAS_FLcDNA=J023004C21;Oryzabase=9184;Expression=AK072272;TENOR=Os10t0541000-01;KEGG=Os10t0541000-01
Chr10	irgsp1_rep	CDS	21114125	21114148	.	-	0	Parent=Os10t0541000-01
Chr10	irgsp1_rep	CDS	21113959	21114016	.	-	0	Parent=Os10t0541000-01
Chr10	irgsp1_rep	CDS	21113639	21113841	.	-	2	Parent=Os10t0541000-01
Chr10	irgsp1_rep	CDS	21113285	21113401	.	-	0	Parent=Os10t0541000-01
Chr10	irgsp1_rep	CDS	21113069	21113129	.	-	0	Parent=Os10t0541000-01
Chr10	irgsp1_rep	CDS	21112805	21112893	.	-	2	Parent=Os10t0541000-01
Chr10	irgsp1_rep	CDS	21112424	21112498	.	-	0	Parent=Os10t0541000-01
Chr10	irgsp1_rep	CDS	21112257	21112345	.	-	0	Parent=Os10t0541000-01
Chr10	irgsp1_rep	CDS	21111745	21111794	.	-	1	Parent=Os10t0541000-01
Chr10	irgsp1_rep	CDS	21111465	21111505	.	-	2	Parent=Os10t0541000-01
Chr10	irgsp1_rep	CDS	21111189	21111362	.	-	0	Parent=Os10t0541000-01
Chr10	irgsp1_rep	CDS	21110852	21110887	.	-	0	Parent=Os10t0541000-01
Chr10	irgsp1_rep	CDS	21110699	21110766	.	-	0	Parent=Os10t0541000-01
Chr10	irgsp1_rep	CDS	21110553	21110613	.	-	1	Parent=Os10t0541000-01
Chr10	irgsp1_rep	CDS	21109918	21110385	.	-	0	Parent=Os10t0541000-01
Chr10	irgsp1_rep	three_prime_UTR	21109457	21109917	.	-	.	Parent=Os10t0541000-01
Chr10	irgsp1_rep	mRNA	21126355	21130091	.	+	.	ID=Os10t0541200-01;Name=Os10t0541200-01;Locus_id=Os10g0541200;Oryzabase Gene Symbol Synonym(s)=OsPP113;Oryzabase Gene Name Synonym(s)=Protein phosphatase 113;Note=Similar to Protein phosphatase 2C containing protein%2C expressed.;Transcript_evidence=AK063496 (DDBJ%2C Best hit);ORF_evidence=Q336W3 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932);NIAS_FLcDNA=001-116-D05;Oryzabase=18655;TENOR=Os10t0541200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	21126355	21126528	.	+	.	Parent=Os10t0541200-01
Chr10	irgsp1_rep	five_prime_UTR	21126988	21127013	.	+	.	Parent=Os10t0541200-01
Chr10	irgsp1_rep	CDS	21127014	21127160	.	+	0	Parent=Os10t0541200-01
Chr10	irgsp1_rep	CDS	21127255	21127452	.	+	0	Parent=Os10t0541200-01
Chr10	irgsp1_rep	CDS	21128008	21128217	.	+	0	Parent=Os10t0541200-01
Chr10	irgsp1_rep	three_prime_UTR	21128218	21128815	.	+	.	Parent=Os10t0541200-01
Chr10	irgsp1_rep	three_prime_UTR	21129049	21130091	.	+	.	Parent=Os10t0541200-01
Chr10	irgsp1_rep	mRNA	21143694	21146902	.	-	.	ID=Os10t0541600-00;Name=Os10t0541600-00;Locus_id=Os10g0541600;CGSNL Gene Symbol=SCP47;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 47;Oryzabase Gene Symbol Synonym(s)=OsSCP47;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 47;Note=Peptidase S10%2C serine carboxypeptidase domain containing protein.;Transcript_evidence=EU974472 (DDBJ);ORF_evidence=Q9FRJ0 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);Oryzabase=19225;TENOR=Os10t0541600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	21146584	21146902	.	-	0	Parent=Os10t0541600-00
Chr10	irgsp1_rep	CDS	21146341	21146448	.	-	2	Parent=Os10t0541600-00
Chr10	irgsp1_rep	CDS	21145767	21145862	.	-	2	Parent=Os10t0541600-00
Chr10	irgsp1_rep	CDS	21145522	21145614	.	-	2	Parent=Os10t0541600-00
Chr10	irgsp1_rep	CDS	21145334	21145422	.	-	2	Parent=Os10t0541600-00
Chr10	irgsp1_rep	CDS	21144895	21145203	.	-	0	Parent=Os10t0541600-00
Chr10	irgsp1_rep	three_prime_UTR	21144855	21144894	.	-	.	Parent=Os10t0541600-00
Chr10	irgsp1_rep	three_prime_UTR	21144670	21144782	.	-	.	Parent=Os10t0541600-00
Chr10	irgsp1_rep	three_prime_UTR	21144479	21144574	.	-	.	Parent=Os10t0541600-00
Chr10	irgsp1_rep	three_prime_UTR	21144151	21144256	.	-	.	Parent=Os10t0541600-00
Chr10	irgsp1_rep	three_prime_UTR	21143694	21143840	.	-	.	Parent=Os10t0541600-00
Chr10	irgsp1_rep	mRNA	21154175	21155750	.	+	.	ID=Os10t0541700-00;Name=Os10t0541700-00;Locus_id=Os10g0541700;Note=Hypothetical gene.;Transcript_evidence=AK250264 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0541700-00;KEGG=Os10t0541700-00
Chr10	irgsp1_rep	five_prime_UTR	21154175	21154677	.	+	.	Parent=Os10t0541700-00
Chr10	irgsp1_rep	CDS	21154678	21155613	.	+	0	Parent=Os10t0541700-00
Chr10	irgsp1_rep	three_prime_UTR	21155614	21155750	.	+	.	Parent=Os10t0541700-00
Chr10	irgsp1_rep	mRNA	21156207	21156975	.	-	.	ID=Os10t0541800-01;Name=Os10t0541800-01;Locus_id=Os10g0541800;Note=Non-protein coding transcript.;Transcript_evidence=AK111392 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-182-C06;TENOR=Os10t0541800-01
Chr10	irgsp1_rep	exon	21156207	21156975	.	-	.	Parent=Os10t0541800-01
Chr10	irgsp1_rep	mRNA	21168491	21169227	.	+	.	ID=Os10t0542100-01;Name=Os10t0542100-01;Locus_id=Os10g0542100;CGSNL Gene Symbol=MTII1A;CGSNL Gene Name=METALLOTHIONEIN II-1A;Oryzabase Gene Symbol Synonym(s)=OsMT4%2C OsMT-II-1a%2C MT4%2C MT-II-1a;Oryzabase Gene Name Synonym(s)=Metallothionein 4%2C type 4 metallothionein;Note=Plant EC metallothionein-like protein%2C family 15 protein.;Transcript_evidence=AK063504 (DDBJ%2C Best hit),AK102405 (DDBJ%2C Best hit);ORF_evidence=Q109B0 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Plant EC metallothionein-like protein%2C family 15 (IPR000316);NIAS_FLcDNA=001-116-F03,J033092K22;Oryzabase=11124;TENOR=Os10t0542100-01
Chr10	irgsp1_rep	five_prime_UTR	21168491	21168543	.	+	.	Parent=Os10t0542100-01
Chr10	irgsp1_rep	CDS	21168544	21168602	.	+	0	Parent=Os10t0542100-01
Chr10	irgsp1_rep	CDS	21168689	21168893	.	+	1	Parent=Os10t0542100-01
Chr10	irgsp1_rep	three_prime_UTR	21168894	21169227	.	+	.	Parent=Os10t0542100-01
Chr10	irgsp1_rep	mRNA	21169734	21174539	.	-	.	ID=Os10t0542200-01;Name=Os10t0542200-01;Locus_id=Os10g0542200;CGSNL Gene Symbol=DSK2B;CGSNL Gene Name=DOMINANT SUPPRESSOR OF KAR2 B;Oryzabase Gene Symbol Synonym(s)=OsDSK2b;Oryzabase Gene Name Synonym(s)=DOMINANT SUPPRESSOR of KAR2 b;Note=Ubiquilin domain containing protein.;Transcript_evidence=AK105042 (DDBJ%2C Best hit),AK065246 (DDBJ%2C Best hit);ORF_evidence=Q336W1 (UniProt);GO=Biological Process: nucleotide-excision repair (GO:0006289),Biological Process: proteasomal ubiquitin-dependent protein catabolic process (GO:0043161),Molecular Function: damaged DNA binding (GO:0003684),Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal (IPR000449),Ubiquitin (IPR000626),Heat shock chaperonin-binding (IPR006636),UBA-like (IPR009060),XPC-binding domain (IPR015360),Ubiquilin (IPR015496),Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (IPR015940),Ubiquitin supergroup (IPR019955);NIAS_FLcDNA=001-037-B04,J013002I23;Oryzabase=23443;Expression=AK105042;TENOR=Os10t0542200-01;KEGG=Os10t0542200-01
Chr10	irgsp1_rep	five_prime_UTR	21174419	21174539	.	-	.	Parent=Os10t0542200-01
Chr10	irgsp1_rep	CDS	21174154	21174418	.	-	0	Parent=Os10t0542200-01
Chr10	irgsp1_rep	CDS	21171915	21172643	.	-	2	Parent=Os10t0542200-01
Chr10	irgsp1_rep	CDS	21171548	21171837	.	-	2	Parent=Os10t0542200-01
Chr10	irgsp1_rep	CDS	21171344	21171457	.	-	0	Parent=Os10t0542200-01
Chr10	irgsp1_rep	CDS	21171213	21171271	.	-	0	Parent=Os10t0542200-01
Chr10	irgsp1_rep	CDS	21171080	21171108	.	-	1	Parent=Os10t0542200-01
Chr10	irgsp1_rep	CDS	21170196	21170288	.	-	2	Parent=Os10t0542200-01
Chr10	irgsp1_rep	CDS	21169973	21170121	.	-	2	Parent=Os10t0542200-01
Chr10	irgsp1_rep	three_prime_UTR	21169734	21169972	.	-	.	Parent=Os10t0542200-01
Chr10	irgsp1_rep	mRNA	21169711	21172191	.	-	.	ID=Os10t0542200-03;Name=Os10t0542200-03;Locus_id=Os10g0542200;CGSNL Gene Symbol=DSK2B;CGSNL Gene Name=DOMINANT SUPPRESSOR OF KAR2 B;Oryzabase Gene Symbol Synonym(s)=OsDSK2b;Oryzabase Gene Name Synonym(s)=DOMINANT SUPPRESSOR of KAR2 b;Note=Hypothetical conserved gene.;Transcript_evidence=AK070702 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal (IPR000449),Heat shock chaperonin-binding (IPR006636),UBA-like (IPR009060),Ubiquilin (IPR015496),Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (IPR015940);NIAS_FLcDNA=J023057O22;Oryzabase=23443;Expression=AK070702;TENOR=Os10t0542200-03;KEGG=Os10t0542200-03
Chr10	irgsp1_rep	CDS	21171915	21172191	.	-	0	Parent=Os10t0542200-03
Chr10	irgsp1_rep	CDS	21171548	21171837	.	-	2	Parent=Os10t0542200-03
Chr10	irgsp1_rep	CDS	21171344	21171457	.	-	0	Parent=Os10t0542200-03
Chr10	irgsp1_rep	CDS	21171213	21171271	.	-	0	Parent=Os10t0542200-03
Chr10	irgsp1_rep	CDS	21171080	21171108	.	-	1	Parent=Os10t0542200-03
Chr10	irgsp1_rep	CDS	21170196	21170288	.	-	2	Parent=Os10t0542200-03
Chr10	irgsp1_rep	CDS	21169973	21170121	.	-	2	Parent=Os10t0542200-03
Chr10	irgsp1_rep	three_prime_UTR	21169711	21169972	.	-	.	Parent=Os10t0542200-03
Chr10	irgsp1_rep	mRNA	21169727	21172263	.	+	.	ID=Os10t0542266-00;Name=Os10t0542266-00;Locus_id=Os10g0542266;Note=Hypothetical gene.;Transcript_evidence=BT016881 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0542266-00;KEGG=Os10t0542266-00
Chr10	irgsp1_rep	five_prime_UTR	21169727	21170106	.	+	.	Parent=Os10t0542266-00
Chr10	irgsp1_rep	five_prime_UTR	21170181	21170351	.	+	.	Parent=Os10t0542266-00
Chr10	irgsp1_rep	five_prime_UTR	21171311	21171448	.	+	.	Parent=Os10t0542266-00
Chr10	irgsp1_rep	five_prime_UTR	21171537	21171554	.	+	.	Parent=Os10t0542266-00
Chr10	irgsp1_rep	CDS	21171555	21171839	.	+	0	Parent=Os10t0542266-00
Chr10	irgsp1_rep	CDS	21171901	21171906	.	+	0	Parent=Os10t0542266-00
Chr10	irgsp1_rep	three_prime_UTR	21171907	21172263	.	+	.	Parent=Os10t0542266-00
Chr10	irgsp1_rep	mRNA	21179551	21181282	.	+	.	ID=Os10t0542400-01;Name=Os10t0542400-01;Locus_id=Os10g0542400;Note=Expansin/Lol pI family protein.;Transcript_evidence=AK068088 (DDBJ%2C Best hit);ORF_evidence=Q7XCL0 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);NIAS_FLcDNA=J013131C11;Expression=AK068088;TENOR=Os10t0542400-01;KEGG=Os10t0542400-01
Chr10	irgsp1_rep	five_prime_UTR	21179551	21179803	.	+	.	Parent=Os10t0542400-01
Chr10	irgsp1_rep	CDS	21179804	21179954	.	+	0	Parent=Os10t0542400-01
Chr10	irgsp1_rep	CDS	21180083	21180192	.	+	2	Parent=Os10t0542400-01
Chr10	irgsp1_rep	CDS	21180310	21180491	.	+	0	Parent=Os10t0542400-01
Chr10	irgsp1_rep	CDS	21180695	21180830	.	+	1	Parent=Os10t0542400-01
Chr10	irgsp1_rep	CDS	21180920	21181168	.	+	0	Parent=Os10t0542400-01
Chr10	irgsp1_rep	three_prime_UTR	21181169	21181282	.	+	.	Parent=Os10t0542400-01
Chr10	irgsp1_rep	mRNA	21179719	21181277	.	+	.	ID=Os10t0542400-02;Name=Os10t0542400-02;Locus_id=Os10g0542400;Note=Expansin/Lol pI family protein.;Transcript_evidence=AK066611 (DDBJ%2C Best hit);ORF_evidence=Q7XCL0 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);NIAS_FLcDNA=J013071J19;Expression=AK066611;TENOR=Os10t0542400-02;KEGG=Os10t0542400-02
Chr10	irgsp1_rep	five_prime_UTR	21179719	21179803	.	+	.	Parent=Os10t0542400-02
Chr10	irgsp1_rep	CDS	21179804	21179954	.	+	0	Parent=Os10t0542400-02
Chr10	irgsp1_rep	CDS	21180083	21180192	.	+	2	Parent=Os10t0542400-02
Chr10	irgsp1_rep	CDS	21180310	21180491	.	+	0	Parent=Os10t0542400-02
Chr10	irgsp1_rep	CDS	21180695	21180830	.	+	1	Parent=Os10t0542400-02
Chr10	irgsp1_rep	CDS	21180920	21181168	.	+	0	Parent=Os10t0542400-02
Chr10	irgsp1_rep	three_prime_UTR	21181169	21181277	.	+	.	Parent=Os10t0542400-02
Chr10	irgsp1_rep	mRNA	21179877	21181168	.	-	.	ID=Os10t0542550-00;Name=Os10t0542550-00;Locus_id=Os10g0542550;Note=Hypothetical protein.;Transcript_evidence=AK367754 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0542550-00
Chr10	irgsp1_rep	five_prime_UTR	21180916	21181168	.	-	.	Parent=Os10t0542550-00
Chr10	irgsp1_rep	five_prime_UTR	21180444	21180826	.	-	.	Parent=Os10t0542550-00
Chr10	irgsp1_rep	CDS	21180302	21180443	.	-	0	Parent=Os10t0542550-00
Chr10	irgsp1_rep	CDS	21179877	21180185	.	-	2	Parent=Os10t0542550-00
Chr10	irgsp1_rep	mRNA	21189970	21190905	.	+	.	ID=Os10t0542700-00;Name=Os10t0542700-00;Locus_id=Os10g0542700;Note=Protein of unknown function DUF241%2C plant family protein.;Transcript_evidence=AK372612 (DDBJ);ORF_evidence=Q01JA5 (UniProt);InterPro=Protein of unknown function DUF241%2C plant (IPR004320);TENOR=Os10t0542700-00;KEGG=Os10t0542700-00
Chr10	irgsp1_rep	CDS	21189970	21190905	.	+	0	Parent=Os10t0542700-00
Chr10	irgsp1_rep	mRNA	21190091	21190915	.	-	.	ID=Os10t0542750-00;Name=Os10t0542750-00;Locus_id=Os10g0542750;Note=Hypothetical protein.;Transcript_evidence=EU942482 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0542750-00
Chr10	irgsp1_rep	five_prime_UTR	21190915	21190915	.	-	.	Parent=Os10t0542750-00
Chr10	irgsp1_rep	CDS	21190091	21190914	.	-	0	Parent=Os10t0542750-00
Chr10	irgsp1_rep	mRNA	21199763	21204782	.	+	.	ID=Os10t0542800-01;Name=Os10t0542800-01;Locus_id=Os10g0542800;RAP-DB Gene Symbol Synonym(s)=OsBSK1-2;RAP-DB Gene Name Synonym(s)=brassinosteroid (BR)-signaling kinase1-2;CGSNL Gene Symbol=RLCK304;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 304;Oryzabase Gene Symbol Synonym(s)=OsRLCK304%2C OsBSK1-2%2C BSK1-2;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 304%2C brassinosteroid-SIGNALING KINASE 1-2;Note=Brassinosteroid-signaling kinase%2C A member of the receptor-like cytoplasmic kinase (RLCK)-XII sub group%2C Major regulator in rice immunity;Transcript_evidence=Inferred from literature;ORF_evidence=Q336V9;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine-threonine/tyrosine-protein kinase%2C catalytic domain (IPR001245),Tetratricopeptide-like helical domain (IPR011990);NIAS_FLcDNA=J023093M21 (truncated);Manual Curation=July 28%2C 2017;Literature_PMID=28680425;Oryzabase=18980;Expression=AK121234;TENOR=Os10t0542800-01;KEGG=Os10t0542800-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	21199763	21199859	.	+	.	Parent=Os10t0542800-01
Chr10	irgsp1_rep	CDS	21199860	21200234	.	+	0	Parent=Os10t0542800-01
Chr10	irgsp1_rep	CDS	21200393	21200528	.	+	0	Parent=Os10t0542800-01
Chr10	irgsp1_rep	CDS	21201222	21201355	.	+	2	Parent=Os10t0542800-01
Chr10	irgsp1_rep	CDS	21201897	21202002	.	+	0	Parent=Os10t0542800-01
Chr10	irgsp1_rep	CDS	21202402	21202487	.	+	2	Parent=Os10t0542800-01
Chr10	irgsp1_rep	CDS	21202823	21203011	.	+	0	Parent=Os10t0542800-01
Chr10	irgsp1_rep	CDS	21203524	21203697	.	+	0	Parent=Os10t0542800-01
Chr10	irgsp1_rep	CDS	21203813	21203926	.	+	0	Parent=Os10t0542800-01
Chr10	irgsp1_rep	CDS	21204062	21204316	.	+	0	Parent=Os10t0542800-01
Chr10	irgsp1_rep	three_prime_UTR	21204317	21204782	.	+	.	Parent=Os10t0542800-01
Chr10	irgsp1_rep	mRNA	21205700	21207611	.	+	.	ID=Os10t0542900-01;Name=Os10t0542900-01;Locus_id=Os10g0542900;CGSNL Gene Symbol=CHT8;CGSNL Gene Name=CHITINASE 8;Oryzabase Gene Symbol Synonym(s)=Cht8%2C OsChia2a%2C Cht2%2C Rcht2%2C Chia2a%2C CHIT14%2C OsCHIT14;Oryzabase Gene Name Synonym(s)=Chitinase8%2C Chitinase 8%2C Pathogenesis related (PR)-3 chitinase 8%2C Pathogenesis related-3 chitinase 8%2C PR-3 chitinase 8%2C Class II chitinase a;Note=Similar to chitinase.;Transcript_evidence=AK070067 (DDBJ%2C Best hit);ORF_evidence=Q7XCK6 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: chitin catabolic process (GO:0006032),Biological Process: cell wall macromolecule catabolic process (GO:0016998),Molecular Function: chitinase activity (GO:0004568);InterPro=Glycoside hydrolase%2C family 19%2C catalytic (IPR000726),Glycoside hydrolase%2C family 19 (IPR016283),Lysozyme-like domain (IPR023346);NIAS_FLcDNA=J023042L15;Oryzabase=8130;Expression=AK070067;TENOR=Os10t0542900-01;KEGG=Os10t0542900-01
Chr10	irgsp1_rep	five_prime_UTR	21205700	21205724	.	+	.	Parent=Os10t0542900-01
Chr10	irgsp1_rep	CDS	21205725	21206025	.	+	0	Parent=Os10t0542900-01
Chr10	irgsp1_rep	CDS	21206115	21206226	.	+	2	Parent=Os10t0542900-01
Chr10	irgsp1_rep	CDS	21206978	21207350	.	+	1	Parent=Os10t0542900-01
Chr10	irgsp1_rep	three_prime_UTR	21207351	21207611	.	+	.	Parent=Os10t0542900-01
Chr10	irgsp1_rep	mRNA	21208961	21209371	.	-	.	ID=Os10t0543150-00;Name=Os10t0543150-00;Locus_id=Os10g0543150;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001176258.1 (RefSeq);TENOR=Os10t0543150-00
Chr10	irgsp1_rep	CDS	21208961	21209371	.	-	0	Parent=Os10t0543150-00
Chr10	irgsp1_rep	mRNA	21219598	21221819	.	+	.	ID=Os10t0543400-00;Name=Os10t0543400-00;Locus_id=Os10g0543400;Note=Chitinase 8.;Transcript_evidence=Q7XCK6 (UniProt);ORF_evidence=Q7XCK6 (UniProt);GO=Biological Process: chitin catabolic process (GO:0006032),Biological Process: cell wall macromolecule catabolic process (GO:0016998),Molecular Function: chitinase activity (GO:0004568);InterPro=Glycoside hydrolase%2C family 19%2C catalytic (IPR000726),Lysozyme-like domain (IPR023346);TENOR=Os10t0543400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	21219598	21219898	.	+	0	Parent=Os10t0543400-00
Chr10	irgsp1_rep	CDS	21219988	21220099	.	+	2	Parent=Os10t0543400-00
Chr10	irgsp1_rep	CDS	21221705	21221819	.	+	1	Parent=Os10t0543400-00
Chr10	irgsp1_rep	mRNA	21224757	21226937	.	+	.	ID=Os10t0543500-01;Name=Os10t0543500-01;Locus_id=Os10g0543500;Oryzabase Gene Symbol Synonym(s)=OsSTRL19%2C STRL19;Oryzabase Gene Name Synonym(s)=STR-like 19;Note=Six-bladed beta-propeller%2C TolB-like domain containing protein.;Transcript_evidence=AK106264 (DDBJ%2C Best hit);ORF_evidence=Q109A9 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: strictosidine synthase activity (GO:0016844);InterPro=Six-bladed beta-propeller%2C TolB-like (IPR011042),Strictosidine synthase%2C conserved region (IPR018119);NIAS_FLcDNA=002-100-F10;Oryzabase=21799;Expression=AK106264;TENOR=Os10t0543500-01;KEGG=Os10t0543500-01
Chr10	irgsp1_rep	five_prime_UTR	21224757	21224757	.	+	.	Parent=Os10t0543500-01
Chr10	irgsp1_rep	CDS	21224758	21224799	.	+	0	Parent=Os10t0543500-01
Chr10	irgsp1_rep	CDS	21225338	21225645	.	+	0	Parent=Os10t0543500-01
Chr10	irgsp1_rep	CDS	21225722	21225854	.	+	1	Parent=Os10t0543500-01
Chr10	irgsp1_rep	CDS	21225951	21226235	.	+	0	Parent=Os10t0543500-01
Chr10	irgsp1_rep	three_prime_UTR	21226236	21226937	.	+	.	Parent=Os10t0543500-01
Chr10	irgsp1_rep	mRNA	21231593	21233093	.	-	.	ID=Os10t0543800-00;Name=Os10t0543800-00;Locus_id=Os10g0543800;CGSNL Gene Symbol=RPP31;CGSNL Gene Name=PHLOEM PROTEIN 31;Oryzabase Gene Symbol Synonym(s)=OsRPP31%2C OsGSTF6%2C GSTF6;Oryzabase Gene Name Synonym(s)=31 kDa rice phloem protein%2C phloem specific glutathione S-transferase%2C PHI GLUTATHIONE S-TRANSFERASE 6;Note=Similar to Glutathione S-transferase GST 11 (EC 2.5.1.18).;Transcript_evidence=CT836577 (DDBJ%2C Best hit);ORF_evidence=NP_001104983.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);Oryzabase=9466;TENOR=Os10t0543800-00;KEGG=Os10t0543800-00 (EC:2.5.1.18)
Chr10	irgsp1_rep	five_prime_UTR	21232997	21233093	.	-	.	Parent=Os10t0543800-00
Chr10	irgsp1_rep	CDS	21232844	21232996	.	-	0	Parent=Os10t0543800-00
Chr10	irgsp1_rep	CDS	21232590	21232638	.	-	0	Parent=Os10t0543800-00
Chr10	irgsp1_rep	CDS	21231880	21232514	.	-	2	Parent=Os10t0543800-00
Chr10	irgsp1_rep	three_prime_UTR	21231593	21231879	.	-	.	Parent=Os10t0543800-00
Chr10	irgsp1_rep	mRNA	21244725	21247074	.	-	.	ID=Os10t0544200-01;Name=Os10t0544200-01;Locus_id=Os10g0544200;Oryzabase Gene Symbol Synonym(s)=OsbHLH004;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 004;Note=Basic helix-loop-helix dimerisation region bHLH domain containing protein.;Transcript_evidence=AK063669 (DDBJ%2C Best hit);ORF_evidence=NP_001149796.1 (RefSeq);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=001-119-D04;Oryzabase=10931;Expression=AK063669;TENOR=Os10t0544200-01;KEGG=Os10t0544200-01
Chr10	irgsp1_rep	five_prime_UTR	21247055	21247074	.	-	.	Parent=Os10t0544200-01
Chr10	irgsp1_rep	CDS	21246383	21247054	.	-	0	Parent=Os10t0544200-01
Chr10	irgsp1_rep	CDS	21246070	21246276	.	-	0	Parent=Os10t0544200-01
Chr10	irgsp1_rep	CDS	21245550	21245720	.	-	0	Parent=Os10t0544200-01
Chr10	irgsp1_rep	CDS	21245033	21245125	.	-	0	Parent=Os10t0544200-01
Chr10	irgsp1_rep	three_prime_UTR	21244725	21245032	.	-	.	Parent=Os10t0544200-01
Chr10	irgsp1_rep	mRNA	21253585	21256452	.	+	.	ID=Os10t0544500-01;Name=Os10t0544500-01;Locus_id=Os10g0544500;Oryzabase Gene Symbol Synonym(s)=OsWD40-180;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK073941 (DDBJ%2C Best hit);ORF_evidence=NP_001150616.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J033078O14;Oryzabase=10861;Expression=AK073941;TENOR=Os10t0544500-01;KEGG=Os10t0544500-01
Chr10	irgsp1_rep	five_prime_UTR	21253585	21253664	.	+	.	Parent=Os10t0544500-01
Chr10	irgsp1_rep	CDS	21253665	21253781	.	+	0	Parent=Os10t0544500-01
Chr10	irgsp1_rep	CDS	21254357	21254608	.	+	0	Parent=Os10t0544500-01
Chr10	irgsp1_rep	CDS	21254696	21254839	.	+	0	Parent=Os10t0544500-01
Chr10	irgsp1_rep	CDS	21254949	21255668	.	+	0	Parent=Os10t0544500-01
Chr10	irgsp1_rep	CDS	21256130	21256396	.	+	0	Parent=Os10t0544500-01
Chr10	irgsp1_rep	three_prime_UTR	21256397	21256452	.	+	.	Parent=Os10t0544500-01
Chr10	irgsp1_rep	mRNA	21254536	21256612	.	+	.	ID=Os10t0544500-02;Name=Os10t0544500-02;Locus_id=Os10g0544500;Oryzabase Gene Symbol Synonym(s)=OsWD40-180;Note=Similar to nucleotide binding protein.;Transcript_evidence=AK060182 (DDBJ%2C Best hit);ORF_evidence=NP_001150616.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=001-001-C03;Oryzabase=10861;Expression=AK060182;TENOR=Os10t0544500-02;KEGG=Os10t0544500-02
Chr10	irgsp1_rep	five_prime_UTR	21254536	21254536	.	+	.	Parent=Os10t0544500-02
Chr10	irgsp1_rep	CDS	21254537	21254608	.	+	0	Parent=Os10t0544500-02
Chr10	irgsp1_rep	CDS	21254696	21254839	.	+	0	Parent=Os10t0544500-02
Chr10	irgsp1_rep	CDS	21254949	21255668	.	+	0	Parent=Os10t0544500-02
Chr10	irgsp1_rep	CDS	21256130	21256396	.	+	0	Parent=Os10t0544500-02
Chr10	irgsp1_rep	three_prime_UTR	21256397	21256612	.	+	.	Parent=Os10t0544500-02
Chr10	irgsp1_rep	mRNA	21271714	21275022	.	+	.	ID=Os10t0544600-01;Name=Os10t0544600-01;Locus_id=Os10g0544600;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK061763 (DDBJ%2C Best hit),AK099554 (DDBJ%2C Best hit),AK105882 (DDBJ%2C Best hit);ORF_evidence=NP_001151464.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=001-039-B04,J013033K23,001-204-D04;Expression=AK061763;TENOR=Os10t0544600-01;KEGG=Os10t0544600-01
Chr10	irgsp1_rep	five_prime_UTR	21271714	21271811	.	+	.	Parent=Os10t0544600-01
Chr10	irgsp1_rep	CDS	21271812	21271959	.	+	0	Parent=Os10t0544600-01
Chr10	irgsp1_rep	CDS	21272031	21272209	.	+	2	Parent=Os10t0544600-01
Chr10	irgsp1_rep	CDS	21273218	21273301	.	+	0	Parent=Os10t0544600-01
Chr10	irgsp1_rep	CDS	21274010	21274177	.	+	0	Parent=Os10t0544600-01
Chr10	irgsp1_rep	CDS	21274464	21274586	.	+	0	Parent=Os10t0544600-01
Chr10	irgsp1_rep	three_prime_UTR	21274587	21275022	.	+	.	Parent=Os10t0544600-01
Chr10	irgsp1_rep	mRNA	21271776	21276797	.	+	.	ID=Os10t0544600-02;Name=Os10t0544600-02;Locus_id=Os10g0544600;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK119332 (DDBJ%2C Best hit);ORF_evidence=NP_001151464.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=001-131-B11;Expression=AK119332;TENOR=Os10t0544600-02;KEGG=Os10t0544600-02
Chr10	irgsp1_rep	five_prime_UTR	21271776	21271811	.	+	.	Parent=Os10t0544600-02
Chr10	irgsp1_rep	CDS	21271812	21271959	.	+	0	Parent=Os10t0544600-02
Chr10	irgsp1_rep	CDS	21272031	21272209	.	+	2	Parent=Os10t0544600-02
Chr10	irgsp1_rep	CDS	21273218	21273301	.	+	0	Parent=Os10t0544600-02
Chr10	irgsp1_rep	CDS	21274010	21274177	.	+	0	Parent=Os10t0544600-02
Chr10	irgsp1_rep	CDS	21274464	21274586	.	+	0	Parent=Os10t0544600-02
Chr10	irgsp1_rep	three_prime_UTR	21274587	21276797	.	+	.	Parent=Os10t0544600-02
Chr10	irgsp1_rep	mRNA	21293367	21297479	.	+	.	ID=Os10t0544900-01;Name=Os10t0544900-01;Locus_id=Os10g0544900;Oryzabase Gene Symbol Synonym(s)=OsPP2C72%2C PP2C72%2C OsPP114;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C72%2C protein phosphatase 2C 72%2C protein phosphatase 114;Note=Similar to Protein phosphatase 2C-like protein.;Transcript_evidence=AK119635 (DDBJ%2C Best hit);ORF_evidence=B6TZR2 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=002-130-F02;Oryzabase=17944;Expression=AK119635;TENOR=Os10t0544900-01;KEGG=Os10t0544900-01
Chr10	irgsp1_rep	five_prime_UTR	21293367	21293548	.	+	.	Parent=Os10t0544900-01
Chr10	irgsp1_rep	five_prime_UTR	21293691	21293781	.	+	.	Parent=Os10t0544900-01
Chr10	irgsp1_rep	CDS	21293782	21294106	.	+	0	Parent=Os10t0544900-01
Chr10	irgsp1_rep	CDS	21294636	21295003	.	+	2	Parent=Os10t0544900-01
Chr10	irgsp1_rep	CDS	21295722	21295958	.	+	0	Parent=Os10t0544900-01
Chr10	irgsp1_rep	CDS	21296892	21297143	.	+	0	Parent=Os10t0544900-01
Chr10	irgsp1_rep	three_prime_UTR	21297144	21297479	.	+	.	Parent=Os10t0544900-01
Chr10	irgsp1_rep	mRNA	21296889	21297143	.	-	.	ID=Os10t0544933-00;Name=Os10t0544933-00;Locus_id=Os10g0544933;Note=Non-protein coding transcript.;Transcript_evidence=EU943254 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0544933-00
Chr10	irgsp1_rep	exon	21296889	21297143	.	-	.	Parent=Os10t0544933-00
Chr10	irgsp1_rep	mRNA	21292947	21293993	.	-	.	ID=Os10t0544950-01;Name=Os10t0544950-01;Locus_id=Os10g0544950;Note=Hypothetical gene.;Transcript_evidence=AK242432 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J080092G12;TENOR=Os10t0544950-01;KEGG=Os10t0544950-01
Chr10	irgsp1_rep	five_prime_UTR	21293993	21293993	.	-	.	Parent=Os10t0544950-01
Chr10	irgsp1_rep	CDS	21293636	21293992	.	-	0	Parent=Os10t0544950-01
Chr10	irgsp1_rep	three_prime_UTR	21292947	21293635	.	-	.	Parent=Os10t0544950-01
Chr10	irgsp1_rep	mRNA	21298681	21301755	.	+	.	ID=Os10t0544966-00;Name=Os10t0544966-00;Locus_id=Os10g0544966;Note=Hypothetical protein.;Transcript_evidence=tplb0043b08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0544966-00
Chr10	irgsp1_rep	five_prime_UTR	21298681	21299207	.	+	.	Parent=Os10t0544966-00
Chr10	irgsp1_rep	five_prime_UTR	21299696	21299985	.	+	.	Parent=Os10t0544966-00
Chr10	irgsp1_rep	five_prime_UTR	21300736	21301146	.	+	.	Parent=Os10t0544966-00
Chr10	irgsp1_rep	CDS	21301147	21301183	.	+	0	Parent=Os10t0544966-00
Chr10	irgsp1_rep	CDS	21301270	21301755	.	+	2	Parent=Os10t0544966-00
Chr10	irgsp1_rep	mRNA	21298747	21301704	.	-	.	ID=Os10t0545000-01;Name=Os10t0545000-01;Locus_id=Os10g0545000;Oryzabase Gene Symbol Synonym(s)=OsMGT6%2C OsMRS2-4;Oryzabase Gene Name Synonym(s)=Magnesium transporter 6%2C MRS2/MGT family member 4;Note=Similar to magnesium transporter CorA-like family protein.;Transcript_evidence=AK069472 (DDBJ%2C Best hit);ORF_evidence=NP_567076.1 (RefSeq);GO=Cellular Component: extracellular region (GO:0005576),Molecular Function: extracellular matrix binding (GO:0050840);InterPro=Fibronectin-attachment (IPR010801);NIAS_FLcDNA=J023019C12;Oryzabase=9797;TENOR=Os10t0545000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	21301661	21301704	.	-	.	Parent=Os10t0545000-01
Chr10	irgsp1_rep	CDS	21301163	21301660	.	-	0	Parent=Os10t0545000-01
Chr10	irgsp1_rep	three_prime_UTR	21300738	21301162	.	-	.	Parent=Os10t0545000-01
Chr10	irgsp1_rep	three_prime_UTR	21299703	21299987	.	-	.	Parent=Os10t0545000-01
Chr10	irgsp1_rep	three_prime_UTR	21298747	21299205	.	-	.	Parent=Os10t0545000-01
Chr10	irgsp1_rep	mRNA	21301959	21304013	.	+	.	ID=Os10t0545100-01;Name=Os10t0545100-01;Locus_id=Os10g0545100;Note=Similar to predicted protein.;Transcript_evidence=AK287840 (DDBJ%2C Best hit);ORF_evidence=B9G1Z7 (UniProt);InterPro=Uncharacterised conserved protein UCP014543 (IPR016621);NIAS_FLcDNA=J065194A11;TENOR=Os10t0545100-01;KEGG=Os10t0545100-01
Chr10	irgsp1_rep	five_prime_UTR	21301959	21302008	.	+	.	Parent=Os10t0545100-01
Chr10	irgsp1_rep	CDS	21302009	21302171	.	+	0	Parent=Os10t0545100-01
Chr10	irgsp1_rep	CDS	21302237	21302319	.	+	2	Parent=Os10t0545100-01
Chr10	irgsp1_rep	CDS	21302402	21302443	.	+	0	Parent=Os10t0545100-01
Chr10	irgsp1_rep	CDS	21302601	21302642	.	+	0	Parent=Os10t0545100-01
Chr10	irgsp1_rep	CDS	21302980	21303063	.	+	0	Parent=Os10t0545100-01
Chr10	irgsp1_rep	CDS	21303240	21303327	.	+	0	Parent=Os10t0545100-01
Chr10	irgsp1_rep	CDS	21303451	21303548	.	+	2	Parent=Os10t0545100-01
Chr10	irgsp1_rep	CDS	21303645	21303677	.	+	0	Parent=Os10t0545100-01
Chr10	irgsp1_rep	three_prime_UTR	21303678	21304013	.	+	.	Parent=Os10t0545100-01
Chr10	irgsp1_rep	mRNA	21308453	21311336	.	+	.	ID=Os10t0545200-01;Name=Os10t0545200-01;Locus_id=Os10g0545200;Oryzabase Gene Symbol Synonym(s)=OsGL1-10;Oryzabase Gene Name Synonym(s)=Glossy1-homologous gene 10;Note=Similar to 4%2C4-dimethyl-sterol C4-methyl-oxidase (Fragment).;Transcript_evidence=AK121804 (DDBJ%2C Best hit);ORF_evidence=B4FN64 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Fatty acid hydroxylase (IPR006694);NIAS_FLcDNA=J033097K13;Oryzabase=15284;Expression=AK121804;TENOR=Os10t0545200-01;KEGG=Os10t0545200-01 (EC:1.14.13.72)
Chr10	irgsp1_rep	five_prime_UTR	21308453	21308573	.	+	.	Parent=Os10t0545200-01
Chr10	irgsp1_rep	CDS	21308574	21308903	.	+	0	Parent=Os10t0545200-01
Chr10	irgsp1_rep	CDS	21309273	21309595	.	+	0	Parent=Os10t0545200-01
Chr10	irgsp1_rep	CDS	21310612	21310759	.	+	1	Parent=Os10t0545200-01
Chr10	irgsp1_rep	CDS	21310854	21310886	.	+	0	Parent=Os10t0545200-01
Chr10	irgsp1_rep	CDS	21311054	21311125	.	+	0	Parent=Os10t0545200-01
Chr10	irgsp1_rep	three_prime_UTR	21311126	21311336	.	+	.	Parent=Os10t0545200-01
Chr10	irgsp1_rep	mRNA	21308517	21311336	.	+	.	ID=Os10t0545200-02;Name=Os10t0545200-02;Locus_id=Os10g0545200;Oryzabase Gene Symbol Synonym(s)=OsGL1-10;Oryzabase Gene Name Synonym(s)=Glossy1-homologous gene 10;Note=Similar to 4%2C4-dimethyl-sterol C4-methyl-oxidase (Fragment).;Transcript_evidence=AK098884 (DDBJ%2C Best hit),AK061779 (DDBJ%2C Best hit);ORF_evidence=B4FN64 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Fatty acid hydroxylase (IPR006694);NIAS_FLcDNA=J013001I03,001-039-D10;Oryzabase=15284;Expression=AK098884;TENOR=Os10t0545200-02;KEGG=Os10t0545200-02 (EC:1.14.13.72)
Chr10	irgsp1_rep	five_prime_UTR	21308517	21308573	.	+	.	Parent=Os10t0545200-02
Chr10	irgsp1_rep	CDS	21308574	21308903	.	+	0	Parent=Os10t0545200-02
Chr10	irgsp1_rep	CDS	21309273	21309595	.	+	0	Parent=Os10t0545200-02
Chr10	irgsp1_rep	CDS	21310612	21310759	.	+	1	Parent=Os10t0545200-02
Chr10	irgsp1_rep	CDS	21310854	21310886	.	+	0	Parent=Os10t0545200-02
Chr10	irgsp1_rep	CDS	21311054	21311125	.	+	0	Parent=Os10t0545200-02
Chr10	irgsp1_rep	three_prime_UTR	21311126	21311336	.	+	.	Parent=Os10t0545200-02
Chr10	irgsp1_rep	mRNA	21311755	21315379	.	-	.	ID=Os10t0545300-01;Name=Os10t0545300-01;Locus_id=Os10g0545300;Note=Zinc finger%2C CCHC retroviral-type domain containing protein.;Transcript_evidence=AK065156 (DDBJ%2C Best hit),AK121559 (DDBJ%2C Best hit);ORF_evidence=NP_001149324.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Zinc finger%2C CCHC retroviral-type (IPR013084);NIAS_FLcDNA=J013002B20,J033034B05;Expression=AK065156;TENOR=Os10t0545300-01;KEGG=Os10t0545300-01
Chr10	irgsp1_rep	five_prime_UTR	21315208	21315379	.	-	.	Parent=Os10t0545300-01
Chr10	irgsp1_rep	five_prime_UTR	21314472	21314595	.	-	.	Parent=Os10t0545300-01
Chr10	irgsp1_rep	CDS	21314368	21314471	.	-	0	Parent=Os10t0545300-01
Chr10	irgsp1_rep	CDS	21313236	21313331	.	-	1	Parent=Os10t0545300-01
Chr10	irgsp1_rep	CDS	21311992	21312535	.	-	1	Parent=Os10t0545300-01
Chr10	irgsp1_rep	three_prime_UTR	21311755	21311991	.	-	.	Parent=Os10t0545300-01
Chr10	irgsp1_rep	mRNA	21320574	21322000	.	+	.	ID=Os10t0545500-00;Name=Os10t0545500-00;Locus_id=Os10g0545500;CGSNL Gene Symbol=XTH20;CGSNL Gene Name=XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 20;Oryzabase Gene Symbol Synonym(s)=OsXTH20%2C XET32;Oryzabase Gene Name Synonym(s)=xyloglucan endotransglucosylase/hydrolase%2C xyloglucan endotransglucosylase 20%2C xyloglucan endotransglucosylase/hydrolase 20%2C xyloglucan endotransglucosylase/hydrolase protein 32;Note=Similar to xyloglucan endotransglucosylase/hydrolase protein 32.;Transcript_evidence=FJ264508 (DDBJ);ORF_evidence=NP_001148432.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: cellular glucan metabolic process (GO:0006073),Cellular Component: cell wall (GO:0005618),Cellular Component: apoplast (GO:0048046),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762);InterPro=Glycoside hydrolase%2C family 16 (IPR000757),Concanavalin A-like lectin/glucanase (IPR008985),Xyloglucan endo-transglycosylase%2C C-terminal (IPR010713),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320);Oryzabase=6501;TENOR=Os10t0545500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	21320574	21320992	.	+	0	Parent=Os10t0545500-00
Chr10	irgsp1_rep	CDS	21321636	21321999	.	+	1	Parent=Os10t0545500-00
Chr10	irgsp1_rep	three_prime_UTR	21322000	21322000	.	+	.	Parent=Os10t0545500-00
Chr10	irgsp1_rep	mRNA	21323071	21327370	.	-	.	ID=Os10t0545600-00;Name=Os10t0545600-00;Locus_id=Os10g0545600;Note=Similar to transposon protein.;Transcript_evidence=EU976069 (DDBJ);ORF_evidence=B6UFQ4 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),WD40 repeat-like-containing domain (IPR011046),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),WD40/YVTN repeat-like-containing domain (IPR015943);TENOR=Os10t0545600-00
Chr10	irgsp1_rep	CDS	21327033	21327370	.	-	0	Parent=Os10t0545600-00
Chr10	irgsp1_rep	CDS	21326833	21326911	.	-	1	Parent=Os10t0545600-00
Chr10	irgsp1_rep	CDS	21326648	21326737	.	-	0	Parent=Os10t0545600-00
Chr10	irgsp1_rep	CDS	21326531	21326575	.	-	0	Parent=Os10t0545600-00
Chr10	irgsp1_rep	CDS	21326215	21326250	.	-	0	Parent=Os10t0545600-00
Chr10	irgsp1_rep	CDS	21325843	21325896	.	-	0	Parent=Os10t0545600-00
Chr10	irgsp1_rep	CDS	21325661	21325762	.	-	0	Parent=Os10t0545600-00
Chr10	irgsp1_rep	CDS	21324911	21325021	.	-	0	Parent=Os10t0545600-00
Chr10	irgsp1_rep	CDS	21324670	21324797	.	-	0	Parent=Os10t0545600-00
Chr10	irgsp1_rep	CDS	21324542	21324584	.	-	1	Parent=Os10t0545600-00
Chr10	irgsp1_rep	CDS	21324024	21324086	.	-	0	Parent=Os10t0545600-00
Chr10	irgsp1_rep	CDS	21323753	21323934	.	-	0	Parent=Os10t0545600-00
Chr10	irgsp1_rep	CDS	21323167	21323668	.	-	1	Parent=Os10t0545600-00
Chr10	irgsp1_rep	three_prime_UTR	21323071	21323166	.	-	.	Parent=Os10t0545600-00
Chr10	irgsp1_rep	mRNA	21327675	21330529	.	+	.	ID=Os10t0545700-01;Name=Os10t0545700-01;Locus_id=Os10g0545700;CGSNL Gene Symbol=ACR2.1;CGSNL Gene Name=ARSENATE REDUCTASE 1;Oryzabase Gene Symbol Synonym(s)=CDC25.1%2C OsACR2.1%2C OsStr20%2C STR20;Oryzabase Gene Name Synonym(s)=Sulfurtransferase 20;Note=Similar to Rhodanese-like protein.;Transcript_evidence=AK073024 (DDBJ%2C Best hit);ORF_evidence=Q66T88 (UniProt);InterPro=Rhodanese-like (IPR001763);NIAS_FLcDNA=J023145P04;Oryzabase=8095;Expression=AK073024;TENOR=Os10t0545700-01;KEGG=Os10t0545700-01
Chr10	irgsp1_rep	five_prime_UTR	21327675	21330075	.	+	.	Parent=Os10t0545700-01
Chr10	irgsp1_rep	CDS	21330076	21330282	.	+	0	Parent=Os10t0545700-01
Chr10	irgsp1_rep	three_prime_UTR	21330283	21330529	.	+	.	Parent=Os10t0545700-01
Chr10	irgsp1_rep	mRNA	21328221	21330546	.	+	.	ID=Os10t0545700-02;Name=Os10t0545700-02;Locus_id=Os10g0545700;CGSNL Gene Symbol=ACR2.1;CGSNL Gene Name=ARSENATE REDUCTASE 1;Oryzabase Gene Symbol Synonym(s)=CDC25.1%2C OsACR2.1%2C OsStr20%2C STR20;Oryzabase Gene Name Synonym(s)=Sulfurtransferase 20;Note=Similar to Dual specificity phosphatase Cdc25 (EC 3.1.3.48) (Arath%3BCDC25).;Transcript_evidence=AK074009 (DDBJ%2C Best hit);ORF_evidence=Q10SX6 (UniProt);InterPro=Rhodanese-like (IPR001763);NIAS_FLcDNA=J033076H20;Oryzabase=8095;Expression=AK074009;TENOR=Os10t0545700-02;KEGG=Os10t0545700-02 (EC:3.1.3.48)
Chr10	irgsp1_rep	five_prime_UTR	21328221	21328294	.	+	.	Parent=Os10t0545700-02
Chr10	irgsp1_rep	CDS	21328295	21328449	.	+	0	Parent=Os10t0545700-02
Chr10	irgsp1_rep	CDS	21328564	21328702	.	+	1	Parent=Os10t0545700-02
Chr10	irgsp1_rep	CDS	21330094	21330282	.	+	0	Parent=Os10t0545700-02
Chr10	irgsp1_rep	three_prime_UTR	21330283	21330546	.	+	.	Parent=Os10t0545700-02
Chr10	irgsp1_rep	mRNA	21328294	21330529	.	+	.	ID=Os10t0545700-03;Name=Os10t0545700-03;Locus_id=Os10g0545700;CGSNL Gene Symbol=ACR2.1;CGSNL Gene Name=ARSENATE REDUCTASE 1;Oryzabase Gene Symbol Synonym(s)=CDC25.1%2C OsACR2.1%2C OsStr20%2C STR20;Oryzabase Gene Name Synonym(s)=Sulfurtransferase 20;Note=Similar to Dual specificity phosphatase Cdc25 (EC 3.1.3.48) (Arath%3BCDC25).;Transcript_evidence=AK104025 (DDBJ%2C Best hit);ORF_evidence=Q10SX6 (UniProt);InterPro=Rhodanese-like (IPR001763);NIAS_FLcDNA=001-009-F11;Oryzabase=8095;Expression=AK104025;TENOR=Os10t0545700-03;KEGG=Os10t0545700-03 (EC:3.1.3.48)
Chr10	irgsp1_rep	five_prime_UTR	21328294	21328294	.	+	.	Parent=Os10t0545700-03
Chr10	irgsp1_rep	CDS	21328295	21328449	.	+	0	Parent=Os10t0545700-03
Chr10	irgsp1_rep	CDS	21328564	21328702	.	+	1	Parent=Os10t0545700-03
Chr10	irgsp1_rep	CDS	21330094	21330282	.	+	0	Parent=Os10t0545700-03
Chr10	irgsp1_rep	three_prime_UTR	21330283	21330529	.	+	.	Parent=Os10t0545700-03
Chr10	irgsp1_rep	mRNA	21328299	21330351	.	+	.	ID=Os10t0545700-04;Name=Os10t0545700-04;Locus_id=Os10g0545700;RAP-DB Gene Symbol Synonym(s)=ACR2.1%2C OsACR2.1%2C CDC25.1%2C OsStr20;RAP-DB Gene Name Synonym(s)=ARSENATE REDUCTASE 1%2C Arsenic reductase 1%2C Sulfurtransferase 20;CGSNL Gene Symbol=ACR2.1;CGSNL Gene Name=ARSENATE REDUCTASE 1;Oryzabase Gene Symbol Synonym(s)=CDC25.1%2C OsACR2.1%2C OsStr20%2C STR20;Oryzabase Gene Name Synonym(s)=Sulfurtransferase 20;Note=Dual-specificity tyrosine-phosphatase CDC25%2C Arsenic metabolism;Transcript_evidence=AY860059 (Genbank);ORF_evidence=Q336V5 (UniProt);InterPro=Rhodanese-like (IPR001763);Manual Curation=September 18%2C 2009;Literature_PMID=17388894;Oryzabase=8095
Chr10	irgsp1_rep	five_prime_UTR	21328299	21328363	.	+	.	Parent=Os10t0545700-04
Chr10	irgsp1_rep	CDS	21328364	21328449	.	+	0	Parent=Os10t0545700-04
Chr10	irgsp1_rep	CDS	21328564	21328702	.	+	1	Parent=Os10t0545700-04
Chr10	irgsp1_rep	CDS	21330094	21330282	.	+	0	Parent=Os10t0545700-04
Chr10	irgsp1_rep	three_prime_UTR	21330283	21330351	.	+	.	Parent=Os10t0545700-04
Chr10	irgsp1_rep	mRNA	21331492	21332653	.	+	.	ID=Os10t0545800-01;Name=Os10t0545800-01;Locus_id=Os10g0545800;Note=Nucleic acid-binding%2C OB-fold domain containing protein.;Transcript_evidence=AK103222 (DDBJ%2C Best hit);ORF_evidence=NP_001152237.1 (RefSeq);GO=Biological Process: protein-heme linkage (GO:0017003),Biological Process: cytoChrome complex assembly (GO:0017004),Cellular Component: plasma membrane (GO:0005886);InterPro=CcmE/CycJ protein (IPR004329),Nucleic acid-binding%2C OB-fold (IPR012340);NIAS_FLcDNA=J033123A02;Expression=AK103222;TENOR=Os10t0545800-01;KEGG=Os10t0545800-01
Chr10	irgsp1_rep	five_prime_UTR	21331492	21331600	.	+	.	Parent=Os10t0545800-01
Chr10	irgsp1_rep	CDS	21331601	21332404	.	+	0	Parent=Os10t0545800-01
Chr10	irgsp1_rep	three_prime_UTR	21332405	21332653	.	+	.	Parent=Os10t0545800-01
Chr10	irgsp1_rep	mRNA	21338222	21339608	.	+	.	ID=Os10t0546100-01;Name=Os10t0546100-01;Locus_id=Os10g0546100;Note=Pollen Ole e 1 allergen and extensin domain containing protein.;Transcript_evidence=AK240974 (DDBJ%2C Best hit);ORF_evidence=NP_001065213.1 (RefSeq);InterPro=Pollen Ole e 1 allergen/extensin (IPR006041),Twin-arginine translocation pathway%2C signal sequence (IPR006311);NIAS_FLcDNA=J065047I23;TENOR=Os10t0546100-01;KEGG=Os10t0546100-01
Chr10	irgsp1_rep	five_prime_UTR	21338222	21338308	.	+	.	Parent=Os10t0546100-01
Chr10	irgsp1_rep	CDS	21338309	21338489	.	+	0	Parent=Os10t0546100-01
Chr10	irgsp1_rep	CDS	21339102	21339427	.	+	2	Parent=Os10t0546100-01
Chr10	irgsp1_rep	three_prime_UTR	21339428	21339608	.	+	.	Parent=Os10t0546100-01
Chr10	irgsp1_rep	mRNA	21340893	21348041	.	+	.	ID=Os10t0546200-00;Name=Os10t0546200-00;Locus_id=Os10g0546200;Note=Glycosyl transferase%2C family 1 domain containing protein.;Transcript_evidence=AK372742 (DDBJ);ORF_evidence=Q9AV30 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058);InterPro=Glycosyl transferase%2C family 1 (IPR001296);Oryzabase=15274;TENOR=Os10t0546200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	21340893	21340898	.	+	.	Parent=Os10t0546200-00
Chr10	irgsp1_rep	CDS	21340899	21341312	.	+	0	Parent=Os10t0546200-00
Chr10	irgsp1_rep	CDS	21341632	21341718	.	+	0	Parent=Os10t0546200-00
Chr10	irgsp1_rep	CDS	21341904	21342004	.	+	0	Parent=Os10t0546200-00
Chr10	irgsp1_rep	CDS	21342092	21342142	.	+	1	Parent=Os10t0546200-00
Chr10	irgsp1_rep	CDS	21342791	21342965	.	+	1	Parent=Os10t0546200-00
Chr10	irgsp1_rep	CDS	21343053	21343367	.	+	0	Parent=Os10t0546200-00
Chr10	irgsp1_rep	CDS	21343679	21343882	.	+	0	Parent=Os10t0546200-00
Chr10	irgsp1_rep	CDS	21343974	21344466	.	+	0	Parent=Os10t0546200-00
Chr10	irgsp1_rep	CDS	21344575	21344579	.	+	2	Parent=Os10t0546200-00
Chr10	irgsp1_rep	three_prime_UTR	21344580	21344784	.	+	.	Parent=Os10t0546200-00
Chr10	irgsp1_rep	three_prime_UTR	21345267	21345455	.	+	.	Parent=Os10t0546200-00
Chr10	irgsp1_rep	three_prime_UTR	21346429	21346580	.	+	.	Parent=Os10t0546200-00
Chr10	irgsp1_rep	three_prime_UTR	21346860	21347012	.	+	.	Parent=Os10t0546200-00
Chr10	irgsp1_rep	three_prime_UTR	21347100	21347181	.	+	.	Parent=Os10t0546200-00
Chr10	irgsp1_rep	three_prime_UTR	21347261	21348041	.	+	.	Parent=Os10t0546200-00
Chr10	irgsp1_rep	mRNA	21349972	21359151	.	+	.	ID=Os10t0546300-01;Name=Os10t0546300-01;Locus_id=Os10g0546300;Note=Protein of unknown function DUF2451%2C C-terminal domain containing protein.;Transcript_evidence=AK103033 (DDBJ%2C Best hit);ORF_evidence=B9G6U9 (UniProt);InterPro=Protein of unknown function DUF2451%2C C-terminal (IPR019514),Vacuolar protein sorting-associated protein 54 (IPR019515);NIAS_FLcDNA=J033117D05;Expression=AK103033;TENOR=Os10t0546300-01;KEGG=Os10t0546300-01
Chr10	irgsp1_rep	five_prime_UTR	21349972	21350194	.	+	.	Parent=Os10t0546300-01
Chr10	irgsp1_rep	CDS	21350195	21350449	.	+	0	Parent=Os10t0546300-01
Chr10	irgsp1_rep	CDS	21350555	21350722	.	+	0	Parent=Os10t0546300-01
Chr10	irgsp1_rep	CDS	21350802	21350873	.	+	0	Parent=Os10t0546300-01
Chr10	irgsp1_rep	CDS	21351172	21351250	.	+	0	Parent=Os10t0546300-01
Chr10	irgsp1_rep	CDS	21351486	21351550	.	+	2	Parent=Os10t0546300-01
Chr10	irgsp1_rep	CDS	21351644	21351733	.	+	0	Parent=Os10t0546300-01
Chr10	irgsp1_rep	CDS	21352026	21352115	.	+	0	Parent=Os10t0546300-01
Chr10	irgsp1_rep	CDS	21352371	21352457	.	+	0	Parent=Os10t0546300-01
Chr10	irgsp1_rep	CDS	21352652	21352735	.	+	0	Parent=Os10t0546300-01
Chr10	irgsp1_rep	CDS	21352865	21352984	.	+	0	Parent=Os10t0546300-01
Chr10	irgsp1_rep	CDS	21353063	21353091	.	+	0	Parent=Os10t0546300-01
Chr10	irgsp1_rep	CDS	21353618	21353750	.	+	1	Parent=Os10t0546300-01
Chr10	irgsp1_rep	CDS	21354219	21354671	.	+	0	Parent=Os10t0546300-01
Chr10	irgsp1_rep	CDS	21355181	21355668	.	+	0	Parent=Os10t0546300-01
Chr10	irgsp1_rep	CDS	21355750	21355813	.	+	1	Parent=Os10t0546300-01
Chr10	irgsp1_rep	CDS	21355891	21355993	.	+	0	Parent=Os10t0546300-01
Chr10	irgsp1_rep	CDS	21356107	21356258	.	+	2	Parent=Os10t0546300-01
Chr10	irgsp1_rep	CDS	21356366	21356491	.	+	0	Parent=Os10t0546300-01
Chr10	irgsp1_rep	CDS	21356634	21356704	.	+	0	Parent=Os10t0546300-01
Chr10	irgsp1_rep	CDS	21356866	21356928	.	+	1	Parent=Os10t0546300-01
Chr10	irgsp1_rep	CDS	21357593	21357665	.	+	1	Parent=Os10t0546300-01
Chr10	irgsp1_rep	CDS	21358147	21358266	.	+	0	Parent=Os10t0546300-01
Chr10	irgsp1_rep	CDS	21358355	21358432	.	+	0	Parent=Os10t0546300-01
Chr10	irgsp1_rep	CDS	21358609	21358659	.	+	0	Parent=Os10t0546300-01
Chr10	irgsp1_rep	CDS	21358761	21358871	.	+	0	Parent=Os10t0546300-01
Chr10	irgsp1_rep	three_prime_UTR	21358872	21359151	.	+	.	Parent=Os10t0546300-01
Chr10	irgsp1_rep	mRNA	21360059	21360924	.	-	.	ID=Os10t0546400-01;Name=Os10t0546400-01;Locus_id=Os10g0546400;Note=Conserved hypothetical protein.;Transcript_evidence=AK069919 (DDBJ%2C Best hit);ORF_evidence=B9G6V0 (UniProt);NIAS_FLcDNA=J023036J23;Expression=AK069919;TENOR=Os10t0546400-01;KEGG=Os10t0546400-01
Chr10	irgsp1_rep	five_prime_UTR	21360885	21360924	.	-	.	Parent=Os10t0546400-01
Chr10	irgsp1_rep	CDS	21360498	21360884	.	-	0	Parent=Os10t0546400-01
Chr10	irgsp1_rep	three_prime_UTR	21360059	21360497	.	-	.	Parent=Os10t0546400-01
Chr10	irgsp1_rep	mRNA	21368384	21373100	.	+	.	ID=Os10t0546600-01;Name=Os10t0546600-01;Locus_id=Os10g0546600;CGSNL Gene Symbol=CYP97C2;CGSNL Gene Name=P-450 97C2;Oryzabase Gene Symbol Synonym(s)=CYP97C2;Oryzabase Gene Name Synonym(s)=CytoChrome P450 97C2;Note=Similar to Chloroplast carotenoid epsilon-ring hydroxylase.;Transcript_evidence=AK065689 (DDBJ%2C Best hit);ORF_evidence=NP_190881.2 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J013039G17;Oryzabase=12046;Expression=AK065689;TENOR=Os10t0546600-01;KEGG=Os10t0546600-01 (EC:1.14.13.30)
Chr10	irgsp1_rep	five_prime_UTR	21368384	21368486	.	+	.	Parent=Os10t0546600-01
Chr10	irgsp1_rep	CDS	21368487	21369008	.	+	0	Parent=Os10t0546600-01
Chr10	irgsp1_rep	CDS	21369961	21370257	.	+	0	Parent=Os10t0546600-01
Chr10	irgsp1_rep	CDS	21370390	21370587	.	+	0	Parent=Os10t0546600-01
Chr10	irgsp1_rep	CDS	21370923	21371024	.	+	0	Parent=Os10t0546600-01
Chr10	irgsp1_rep	CDS	21371135	21371275	.	+	0	Parent=Os10t0546600-01
Chr10	irgsp1_rep	CDS	21371346	21371453	.	+	0	Parent=Os10t0546600-01
Chr10	irgsp1_rep	CDS	21371763	21371845	.	+	0	Parent=Os10t0546600-01
Chr10	irgsp1_rep	CDS	21372004	21372166	.	+	1	Parent=Os10t0546600-01
Chr10	irgsp1_rep	CDS	21372811	21372869	.	+	0	Parent=Os10t0546600-01
Chr10	irgsp1_rep	CDS	21373002	21373014	.	+	1	Parent=Os10t0546600-01
Chr10	irgsp1_rep	three_prime_UTR	21373015	21373100	.	+	.	Parent=Os10t0546600-01
Chr10	irgsp1_rep	mRNA	21386647	21387625	.	+	.	ID=Os10t0546900-00;Name=Os10t0546900-00;Locus_id=Os10g0546900;Note=Similar to Zinc finger%2C C3HC4 type family protein%2C expressed.;Transcript_evidence=AK368666 (DDBJ);ORF_evidence=Q109A4 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os10t0546900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	21386647	21387498	.	+	0	Parent=Os10t0546900-00
Chr10	irgsp1_rep	three_prime_UTR	21387499	21387625	.	+	.	Parent=Os10t0546900-00
Chr10	irgsp1_rep	mRNA	21390838	21396429	.	-	.	ID=Os10t0547000-00;Name=Os10t0547000-00;Locus_id=Os10g0547000;Note=Prefoldin domain containing protein.;Transcript_evidence=AK359483 (DDBJ);ORF_evidence=NP_001065218.2 (RefSeq);InterPro=Prefoldin (IPR009053);TENOR=Os10t0547000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	21392708	21396429	.	-	0	Parent=Os10t0547000-00
Chr10	irgsp1_rep	CDS	21392453	21392492	.	-	1	Parent=Os10t0547000-00
Chr10	irgsp1_rep	three_prime_UTR	21392397	21392452	.	-	.	Parent=Os10t0547000-00
Chr10	irgsp1_rep	three_prime_UTR	21390838	21391160	.	-	.	Parent=Os10t0547000-00
Chr10	irgsp1_rep	mRNA	21406906	21407986	.	-	.	ID=Os10t0547200-01;Name=Os10t0547200-01;Locus_id=Os10g0547200;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK060129 (DDBJ%2C Best hit);ORF_evidence=A2Z9Y3 (UniProt);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=006-309-A10;Expression=AK060129;TENOR=Os10t0547200-01;KEGG=Os10t0547200-01
Chr10	irgsp1_rep	five_prime_UTR	21407956	21407986	.	-	.	Parent=Os10t0547200-01
Chr10	irgsp1_rep	CDS	21407227	21407955	.	-	0	Parent=Os10t0547200-01
Chr10	irgsp1_rep	three_prime_UTR	21406906	21407226	.	-	.	Parent=Os10t0547200-01
Chr10	irgsp1_rep	mRNA	21413910	21415268	.	-	.	ID=Os10t0547400-00;Name=Os10t0547400-00;Locus_id=Os10g0547400;Note=Hypothetical gene.;Transcript_evidence=CT835715 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os10t0547400-00;KEGG=Os10t0547400-00
Chr10	irgsp1_rep	five_prime_UTR	21415267	21415268	.	-	.	Parent=Os10t0547400-00
Chr10	irgsp1_rep	CDS	21414949	21415266	.	-	0	Parent=Os10t0547400-00
Chr10	irgsp1_rep	three_prime_UTR	21414074	21414948	.	-	.	Parent=Os10t0547400-00
Chr10	irgsp1_rep	three_prime_UTR	21413910	21414036	.	-	.	Parent=Os10t0547400-00
Chr10	irgsp1_rep	mRNA	21417294	21419832	.	+	.	ID=Os10t0547500-01;Name=Os10t0547500-01;Locus_id=Os10g0547500;CGSNL Gene Symbol=LSI3;CGSNL Gene Name=LOW SILICON RICE 3;Oryzabase Gene Symbol Synonym(s)=Lsi3%2C OsLsi3%2C Lsi3/SIET2%2C SIET2;Oryzabase Gene Name Synonym(s)=low silicon 3%2C silicon efflux transporter 2%2C Si efflux transporter 2;Note=Divalent ion symporter domain containing protein.;Transcript_evidence=AK070040 (DDBJ%2C Best hit);ORF_evidence=C6KYS0 (UniProt);GO=Biological Process: citrate transport (GO:0015746),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: citrate transmembrane transporter activity (GO:0015137);InterPro=Divalent ion symporter (IPR004680);NIAS_FLcDNA=J023036G13;Oryzabase=19959;Expression=AK070040;TENOR=Os10t0547500-01;KEGG=Os10t0547500-01
Chr10	irgsp1_rep	five_prime_UTR	21417294	21417361	.	+	.	Parent=Os10t0547500-01
Chr10	irgsp1_rep	CDS	21417362	21418354	.	+	0	Parent=Os10t0547500-01
Chr10	irgsp1_rep	CDS	21418483	21418672	.	+	0	Parent=Os10t0547500-01
Chr10	irgsp1_rep	CDS	21419029	21419303	.	+	2	Parent=Os10t0547500-01
Chr10	irgsp1_rep	three_prime_UTR	21419304	21419832	.	+	.	Parent=Os10t0547500-01
Chr10	irgsp1_rep	mRNA	21417314	21419289	.	-	.	ID=Os10t0547650-00;Name=Os10t0547650-00;Locus_id=Os10g0547650;Note=Hypothetical protein.;Transcript_evidence=tplb0045l07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0547650-00
Chr10	irgsp1_rep	five_prime_UTR	21419027	21419289	.	-	.	Parent=Os10t0547650-00
Chr10	irgsp1_rep	five_prime_UTR	21418364	21418670	.	-	.	Parent=Os10t0547650-00
Chr10	irgsp1_rep	CDS	21417329	21418363	.	-	0	Parent=Os10t0547650-00
Chr10	irgsp1_rep	three_prime_UTR	21417314	21417328	.	-	.	Parent=Os10t0547650-00
Chr10	irgsp1_rep	mRNA	21430337	21431583	.	+	.	ID=Os10t0547800-01;Name=Os10t0547800-01;Locus_id=Os10g0547800;Note=Non-protein coding transcript.;Transcript_evidence=AK070882 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023068N06;TENOR=Os10t0547800-01
Chr10	irgsp1_rep	exon	21430337	21430444	.	+	.	Parent=Os10t0547800-01
Chr10	irgsp1_rep	exon	21430817	21431583	.	+	.	Parent=Os10t0547800-01
Chr10	irgsp1_rep	mRNA	21435154	21439354	.	-	.	ID=Os10t0547900-01;Name=Os10t0547900-01;Locus_id=Os10g0547900;Note=Similar to Short-chain dehydrogenase Tic32.;Transcript_evidence=AK243616 (DDBJ%2C Best hit);ORF_evidence=Q7XCH4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J100085N24;TENOR=Os10t0547900-01;KEGG=Os10t0547900-01
Chr10	irgsp1_rep	five_prime_UTR	21438931	21439354	.	-	.	Parent=Os10t0547900-01
Chr10	irgsp1_rep	five_prime_UTR	21438721	21438827	.	-	.	Parent=Os10t0547900-01
Chr10	irgsp1_rep	five_prime_UTR	21438232	21438620	.	-	.	Parent=Os10t0547900-01
Chr10	irgsp1_rep	five_prime_UTR	21438037	21438129	.	-	.	Parent=Os10t0547900-01
Chr10	irgsp1_rep	CDS	21437931	21438036	.	-	0	Parent=Os10t0547900-01
Chr10	irgsp1_rep	CDS	21437346	21437577	.	-	2	Parent=Os10t0547900-01
Chr10	irgsp1_rep	CDS	21436836	21436915	.	-	1	Parent=Os10t0547900-01
Chr10	irgsp1_rep	CDS	21436541	21436694	.	-	2	Parent=Os10t0547900-01
Chr10	irgsp1_rep	CDS	21436109	21436187	.	-	1	Parent=Os10t0547900-01
Chr10	irgsp1_rep	CDS	21435926	21436010	.	-	0	Parent=Os10t0547900-01
Chr10	irgsp1_rep	CDS	21435679	21435725	.	-	2	Parent=Os10t0547900-01
Chr10	irgsp1_rep	CDS	21435430	21435591	.	-	0	Parent=Os10t0547900-01
Chr10	irgsp1_rep	three_prime_UTR	21435154	21435429	.	-	.	Parent=Os10t0547900-01
Chr10	irgsp1_rep	mRNA	21442902	21443643	.	-	.	ID=Os10t0548000-01;Name=Os10t0548000-01;Locus_id=Os10g0548000;Note=Hypothetical conserved gene.;Transcript_evidence=AK062860 (DDBJ%2C Best hit);ORF_evidence=B9G6V5 (UniProt);NIAS_FLcDNA=001-108-B01;Expression=AK062860;TENOR=Os10t0548000-01;KEGG=Os10t0548000-01
Chr10	irgsp1_rep	five_prime_UTR	21443643	21443643	.	-	.	Parent=Os10t0548000-01
Chr10	irgsp1_rep	CDS	21443509	21443642	.	-	0	Parent=Os10t0548000-01
Chr10	irgsp1_rep	CDS	21443232	21443259	.	-	1	Parent=Os10t0548000-01
Chr10	irgsp1_rep	three_prime_UTR	21442902	21443231	.	-	.	Parent=Os10t0548000-01
Chr10	irgsp1_rep	mRNA	21440286	21443621	.	-	.	ID=Os10t0548000-02;Name=Os10t0548000-02;Locus_id=Os10g0548000;Note=Similar to Short-chain dehydrogenase Tic32.;Transcript_evidence=AK068549 (DDBJ%2C Best hit);ORF_evidence=Q109A3 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013156B05;Expression=AK068549;TENOR=Os10t0548000-02;KEGG=Os10t0548000-02
Chr10	irgsp1_rep	five_prime_UTR	21443509	21443621	.	-	.	Parent=Os10t0548000-02
Chr10	irgsp1_rep	five_prime_UTR	21443200	21443259	.	-	.	Parent=Os10t0548000-02
Chr10	irgsp1_rep	five_prime_UTR	21442717	21442797	.	-	.	Parent=Os10t0548000-02
Chr10	irgsp1_rep	five_prime_UTR	21442481	21442516	.	-	.	Parent=Os10t0548000-02
Chr10	irgsp1_rep	CDS	21442369	21442480	.	-	0	Parent=Os10t0548000-02
Chr10	irgsp1_rep	CDS	21442041	21442272	.	-	2	Parent=Os10t0548000-02
Chr10	irgsp1_rep	CDS	21441883	21441962	.	-	1	Parent=Os10t0548000-02
Chr10	irgsp1_rep	CDS	21441645	21441798	.	-	2	Parent=Os10t0548000-02
Chr10	irgsp1_rep	CDS	21441139	21441217	.	-	1	Parent=Os10t0548000-02
Chr10	irgsp1_rep	CDS	21440938	21441022	.	-	0	Parent=Os10t0548000-02
Chr10	irgsp1_rep	CDS	21440663	21440709	.	-	2	Parent=Os10t0548000-02
Chr10	irgsp1_rep	CDS	21440387	21440557	.	-	0	Parent=Os10t0548000-02
Chr10	irgsp1_rep	three_prime_UTR	21440286	21440386	.	-	.	Parent=Os10t0548000-02
Chr10	irgsp1_rep	mRNA	21444347	21445487	.	-	.	ID=Os10t0548100-01;Name=Os10t0548100-01;Locus_id=Os10g0548100;Note=Similar to DM280 protein.;Transcript_evidence=AK107224 (DDBJ%2C Best hit);ORF_evidence=B8PWQ3 (UniProt);NIAS_FLcDNA=002-125-D06;Expression=AK107224;TENOR=Os10t0548100-01;KEGG=Os10t0548100-01
Chr10	irgsp1_rep	five_prime_UTR	21445355	21445487	.	-	.	Parent=Os10t0548100-01
Chr10	irgsp1_rep	CDS	21444521	21445354	.	-	0	Parent=Os10t0548100-01
Chr10	irgsp1_rep	three_prime_UTR	21444347	21444520	.	-	.	Parent=Os10t0548100-01
Chr10	irgsp1_rep	mRNA	21446020	21453580	.	-	.	ID=Os10t0548200-01;Name=Os10t0548200-01;Locus_id=Os10g0548200;RAP-DB Gene Symbol Synonym(s)=BSR-K1;RAP-DB Gene Name Synonym(s)=broad-spectrum resistance Kitaake-1;CGSNL Gene Symbol=BSR-K1;CGSNL Gene Name=BROAD-SPECTRUM RESISTANCE KITAAKE-1;Oryzabase Gene Symbol Synonym(s)=OsBSR-K1%2C BSRK1;Oryzabase Gene Name Synonym(s)=broad-spectrum resistance Kitaake-1%2C broad-spectrum resistance Kitaake 1;Note=Tetratricopeptide repeats (TPRs)-containing RNA-binding protein%2C Broad-spectrum disease resistance;Transcript_evidence=AK103617;ORF_evidence=Q336U8;GO=Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical domain superfamily (IPR011990),Tetratricopeptide repeat-containing domain (IPR013026),Tetratricopeptide repeat (IPR019734),Tetratricopeptide repeat 2 (IPR013105);NIAS_FLcDNA=J033133L07;Manual Curation=December 19%2C 2018;Literature_PMID=29432165;Oryzabase=22268;Expression=AK103617;TENOR=Os10t0548200-01;KEGG=Os10t0548200-01;Subcellular location=cytoplasm (GO:0005737)
Chr10	irgsp1_rep	five_prime_UTR	21453485	21453580	.	-	.	Parent=Os10t0548200-01
Chr10	irgsp1_rep	CDS	21453473	21453484	.	-	0	Parent=Os10t0548200-01
Chr10	irgsp1_rep	CDS	21453307	21453387	.	-	0	Parent=Os10t0548200-01
Chr10	irgsp1_rep	CDS	21452969	21453211	.	-	0	Parent=Os10t0548200-01
Chr10	irgsp1_rep	CDS	21452747	21452869	.	-	0	Parent=Os10t0548200-01
Chr10	irgsp1_rep	CDS	21451751	21451834	.	-	0	Parent=Os10t0548200-01
Chr10	irgsp1_rep	CDS	21451597	21451647	.	-	0	Parent=Os10t0548200-01
Chr10	irgsp1_rep	CDS	21451414	21451506	.	-	0	Parent=Os10t0548200-01
Chr10	irgsp1_rep	CDS	21451109	21451249	.	-	0	Parent=Os10t0548200-01
Chr10	irgsp1_rep	CDS	21450957	21451037	.	-	0	Parent=Os10t0548200-01
Chr10	irgsp1_rep	CDS	21450632	21450879	.	-	0	Parent=Os10t0548200-01
Chr10	irgsp1_rep	CDS	21450367	21450538	.	-	1	Parent=Os10t0548200-01
Chr10	irgsp1_rep	CDS	21449926	21450047	.	-	0	Parent=Os10t0548200-01
Chr10	irgsp1_rep	CDS	21449775	21449832	.	-	1	Parent=Os10t0548200-01
Chr10	irgsp1_rep	CDS	21449598	21449663	.	-	0	Parent=Os10t0548200-01
Chr10	irgsp1_rep	CDS	21449000	21449218	.	-	0	Parent=Os10t0548200-01
Chr10	irgsp1_rep	CDS	21448780	21448831	.	-	0	Parent=Os10t0548200-01
Chr10	irgsp1_rep	CDS	21448263	21448636	.	-	2	Parent=Os10t0548200-01
Chr10	irgsp1_rep	CDS	21448060	21448154	.	-	0	Parent=Os10t0548200-01
Chr10	irgsp1_rep	CDS	21447725	21447964	.	-	1	Parent=Os10t0548200-01
Chr10	irgsp1_rep	CDS	21446830	21447473	.	-	1	Parent=Os10t0548200-01
Chr10	irgsp1_rep	CDS	21446464	21446667	.	-	2	Parent=Os10t0548200-01
Chr10	irgsp1_rep	CDS	21446196	21446383	.	-	2	Parent=Os10t0548200-01
Chr10	irgsp1_rep	three_prime_UTR	21446020	21446195	.	-	.	Parent=Os10t0548200-01
Chr10	irgsp1_rep	mRNA	21446055	21449861	.	-	.	ID=Os10t0548200-02;Name=Os10t0548200-02;Locus_id=Os10g0548200;CGSNL Gene Symbol=BSR-K1;CGSNL Gene Name=BROAD-SPECTRUM RESISTANCE KITAAKE-1;Oryzabase Gene Symbol Synonym(s)=OsBSR-K1%2C BSRK1;Oryzabase Gene Name Synonym(s)=broad-spectrum resistance Kitaake-1%2C broad-spectrum resistance Kitaake 1;Note=Hypothetical conserved gene.;Transcript_evidence=AK066542 (DDBJ%2C Best hit);ORF_evidence=Q94LU2 (UniProt);NIAS_FLcDNA=J013069N05;Oryzabase=22268;Expression=AK066542;TENOR=Os10t0548200-02;KEGG=Os10t0548200-02
Chr10	irgsp1_rep	five_prime_UTR	21449664	21449861	.	-	.	Parent=Os10t0548200-02
Chr10	irgsp1_rep	CDS	21449598	21449663	.	-	0	Parent=Os10t0548200-02
Chr10	irgsp1_rep	CDS	21448850	21449218	.	-	0	Parent=Os10t0548200-02
Chr10	irgsp1_rep	three_prime_UTR	21448263	21448849	.	-	.	Parent=Os10t0548200-02
Chr10	irgsp1_rep	three_prime_UTR	21448060	21448154	.	-	.	Parent=Os10t0548200-02
Chr10	irgsp1_rep	three_prime_UTR	21447725	21447964	.	-	.	Parent=Os10t0548200-02
Chr10	irgsp1_rep	three_prime_UTR	21446830	21447473	.	-	.	Parent=Os10t0548200-02
Chr10	irgsp1_rep	three_prime_UTR	21446464	21446667	.	-	.	Parent=Os10t0548200-02
Chr10	irgsp1_rep	three_prime_UTR	21446055	21446383	.	-	.	Parent=Os10t0548200-02
Chr10	irgsp1_rep	mRNA	21445880	21448593	.	-	.	ID=Os10t0548200-03;Name=Os10t0548200-03;Locus_id=Os10g0548200;CGSNL Gene Symbol=BSR-K1;CGSNL Gene Name=BROAD-SPECTRUM RESISTANCE KITAAKE-1;Oryzabase Gene Symbol Synonym(s)=OsBSR-K1%2C BSRK1;Oryzabase Gene Name Synonym(s)=broad-spectrum resistance Kitaake-1%2C broad-spectrum resistance Kitaake 1;Note=Hypothetical conserved gene.;Transcript_evidence=AK062557 (DDBJ%2C Best hit);ORF_evidence=Q94LU2 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-042-H02;Oryzabase=22268;Expression=AK062557;TENOR=Os10t0548200-03;KEGG=Os10t0548200-03
Chr10	irgsp1_rep	five_prime_UTR	21448593	21448593	.	-	.	Parent=Os10t0548200-03
Chr10	irgsp1_rep	CDS	21448263	21448592	.	-	0	Parent=Os10t0548200-03
Chr10	irgsp1_rep	CDS	21448060	21448154	.	-	0	Parent=Os10t0548200-03
Chr10	irgsp1_rep	CDS	21447725	21447964	.	-	1	Parent=Os10t0548200-03
Chr10	irgsp1_rep	CDS	21446830	21447473	.	-	1	Parent=Os10t0548200-03
Chr10	irgsp1_rep	CDS	21446464	21446667	.	-	2	Parent=Os10t0548200-03
Chr10	irgsp1_rep	CDS	21446196	21446383	.	-	2	Parent=Os10t0548200-03
Chr10	irgsp1_rep	three_prime_UTR	21445880	21446195	.	-	.	Parent=Os10t0548200-03
Chr10	irgsp1_rep	mRNA	21454084	21459741	.	-	.	ID=Os10t0548300-01;Name=Os10t0548300-01;Locus_id=Os10g0548300;CGSNL Gene Symbol=RLCK305;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 305;Oryzabase Gene Symbol Synonym(s)=OsPUB53%2C PUB53%2C OsRLCK305%2C OsMed2_1%2C Med2_1;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 53%2C U-box protein 53%2C Receptor-like Cytoplasmic Kinase 305%2C Mediator 2_1;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK073764 (DDBJ%2C Best hit);ORF_evidence=Q94LU3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),U box domain (IPR003613),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033069J08;Oryzabase=17844;TENOR=Os10t0548300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	21459578	21459741	.	-	.	Parent=Os10t0548300-01
Chr10	irgsp1_rep	CDS	21459565	21459577	.	-	0	Parent=Os10t0548300-01
Chr10	irgsp1_rep	CDS	21458497	21458549	.	-	2	Parent=Os10t0548300-01
Chr10	irgsp1_rep	CDS	21457487	21457608	.	-	0	Parent=Os10t0548300-01
Chr10	irgsp1_rep	CDS	21457278	21457382	.	-	1	Parent=Os10t0548300-01
Chr10	irgsp1_rep	CDS	21456498	21456603	.	-	1	Parent=Os10t0548300-01
Chr10	irgsp1_rep	CDS	21455619	21456188	.	-	0	Parent=Os10t0548300-01
Chr10	irgsp1_rep	CDS	21454729	21455496	.	-	0	Parent=Os10t0548300-01
Chr10	irgsp1_rep	CDS	21454295	21454516	.	-	0	Parent=Os10t0548300-01
Chr10	irgsp1_rep	three_prime_UTR	21454084	21454294	.	-	.	Parent=Os10t0548300-01
Chr10	irgsp1_rep	mRNA	21454034	21457356	.	-	.	ID=Os10t0548300-02;Name=Os10t0548300-02;Locus_id=Os10g0548300;CGSNL Gene Symbol=RLCK305;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 305;Oryzabase Gene Symbol Synonym(s)=OsPUB53%2C PUB53%2C OsRLCK305%2C OsMed2_1%2C Med2_1;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 53%2C U-box protein 53%2C Receptor-like Cytoplasmic Kinase 305%2C Mediator 2_1;Note=Similar to cDNA clone:J013005D18%2C full insert sequence.;Transcript_evidence=AK064032 (DDBJ%2C Best hit);ORF_evidence=Q336U6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),U box domain (IPR003613),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-125-B10;Oryzabase=17844;Expression=AK064032;TENOR=Os10t0548300-02;KEGG=Os10t0548300-02
Chr10	irgsp1_rep	five_prime_UTR	21457343	21457356	.	-	.	Parent=Os10t0548300-02
Chr10	irgsp1_rep	CDS	21457278	21457342	.	-	0	Parent=Os10t0548300-02
Chr10	irgsp1_rep	CDS	21456498	21456603	.	-	1	Parent=Os10t0548300-02
Chr10	irgsp1_rep	CDS	21455619	21456188	.	-	0	Parent=Os10t0548300-02
Chr10	irgsp1_rep	CDS	21454729	21455496	.	-	0	Parent=Os10t0548300-02
Chr10	irgsp1_rep	CDS	21454295	21454516	.	-	0	Parent=Os10t0548300-02
Chr10	irgsp1_rep	three_prime_UTR	21454034	21454294	.	-	.	Parent=Os10t0548300-02
Chr10	irgsp1_rep	mRNA	21454331	21456160	.	+	.	ID=Os10t0548350-00;Name=Os10t0548350-00;Locus_id=Os10g0548350;Note=Hypothetical protein.;Transcript_evidence=tplb0060b15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0548350-00
Chr10	irgsp1_rep	five_prime_UTR	21454331	21454535	.	+	.	Parent=Os10t0548350-00
Chr10	irgsp1_rep	five_prime_UTR	21454747	21455498	.	+	.	Parent=Os10t0548350-00
Chr10	irgsp1_rep	five_prime_UTR	21455616	21455624	.	+	.	Parent=Os10t0548350-00
Chr10	irgsp1_rep	CDS	21455625	21455900	.	+	0	Parent=Os10t0548350-00
Chr10	irgsp1_rep	three_prime_UTR	21455901	21456160	.	+	.	Parent=Os10t0548350-00
Chr10	irgsp1_rep	mRNA	21459864	21460642	.	+	.	ID=Os10t0548400-00;Name=Os10t0548400-00;Locus_id=Os10g0548400;Note=Similar to F25C20.9.;Transcript_evidence=EU973528 (DDBJ);ORF_evidence=Q9SAA1 (UniProt);TENOR=Os10t0548400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	21459864	21460505	.	+	0	Parent=Os10t0548400-00
Chr10	irgsp1_rep	three_prime_UTR	21460506	21460642	.	+	.	Parent=Os10t0548400-00
Chr10	irgsp1_rep	mRNA	21465009	21466788	.	+	.	ID=Os10t0548600-01;Name=Os10t0548600-01;Locus_id=Os10g0548600;CGSNL Gene Symbol=EXPB9;CGSNL Gene Name=BETA-EXPANSIN 9;Oryzabase Gene Symbol Synonym(s)=OsEXPB9%2C osaEXPb1.6;Oryzabase Gene Name Synonym(s)=Expansin-B9%2C Beta-expansin-9;Note=Beta-expansin precursor.;Transcript_evidence=AK070187 (DDBJ%2C Best hit),AK099112 (DDBJ%2C Best hit);ORF_evidence=A3C725 (UniProt);GO=Biological Process: sexual reproduction (GO:0019953),Cellular Component: extracellular region (GO:0005576);InterPro=Major pollen allergen Lol pI (IPR005795),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);NIAS_FLcDNA=J023043G12,J023033P05;Oryzabase=9341;TENOR=Os10t0548600-01
Chr10	irgsp1_rep	five_prime_UTR	21465009	21465074	.	+	.	Parent=Os10t0548600-01
Chr10	irgsp1_rep	CDS	21465075	21465261	.	+	0	Parent=Os10t0548600-01
Chr10	irgsp1_rep	CDS	21465545	21465654	.	+	2	Parent=Os10t0548600-01
Chr10	irgsp1_rep	CDS	21466033	21466545	.	+	0	Parent=Os10t0548600-01
Chr10	irgsp1_rep	three_prime_UTR	21466546	21466788	.	+	.	Parent=Os10t0548600-01
Chr10	irgsp1_rep	mRNA	21467611	21472768	.	-	.	ID=Os10t0548700-01;Name=Os10t0548700-01;Locus_id=Os10g0548700;RAP-DB Gene Symbol Synonym(s)=RLCK306%2C OsPUB54%2C OsRLCK306%2C NRRB;RAP-DB Gene Name Synonym(s)=RECEPTOR-LIKE CYTOPLASMIC KINASE 306%2C plant U-box-containing protein 54%2C U-box protein 54%2C Receptor-like Cytoplasmic Kinase 306;CGSNL Gene Symbol=RLCK306;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 306;Oryzabase Gene Symbol Synonym(s)=OsPUB54%2C OsRLCK306;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 54%2C U-box protein 54%2C Receptor-like Cytoplasmic Kinase 306;Note=Receptor-like cytoplasmic kinase%2C Various stress responses%2C  Regulation of resistance to bacterial leaf streak (BLS);Transcript_evidence=AK066841;ORF_evidence=Q336U5;GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: protein ubiquitination (GO:0016567),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ubiquitin-protein transferase activity (GO:0004842),Molecular Function: ATP binding (GO:0005524);InterPro=Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Concanavalin A-like lectin/glucanase domain (IPR013320),Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),U box domain (IPR003613),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J013087A03;Manual Curation=January 18%2C 2017;Literature_PMID=24420860,19825577;Oryzabase=17845;Expression=AK066841;TENOR=Os10t0548700-01;KEGG=Os10t0548700-01
Chr10	irgsp1_rep	five_prime_UTR	21472693	21472768	.	-	.	Parent=Os10t0548700-01
Chr10	irgsp1_rep	CDS	21472410	21472692	.	-	0	Parent=Os10t0548700-01
Chr10	irgsp1_rep	CDS	21471467	21471588	.	-	2	Parent=Os10t0548700-01
Chr10	irgsp1_rep	CDS	21471263	21471384	.	-	0	Parent=Os10t0548700-01
Chr10	irgsp1_rep	CDS	21471075	21471179	.	-	1	Parent=Os10t0548700-01
Chr10	irgsp1_rep	CDS	21470489	21470900	.	-	1	Parent=Os10t0548700-01
Chr10	irgsp1_rep	CDS	21470273	21470413	.	-	0	Parent=Os10t0548700-01
Chr10	irgsp1_rep	CDS	21469651	21470199	.	-	0	Parent=Os10t0548700-01
Chr10	irgsp1_rep	CDS	21468800	21469564	.	-	0	Parent=Os10t0548700-01
Chr10	irgsp1_rep	CDS	21467895	21468095	.	-	0	Parent=Os10t0548700-01
Chr10	irgsp1_rep	three_prime_UTR	21467611	21467894	.	-	.	Parent=Os10t0548700-01
Chr10	irgsp1_rep	mRNA	21467717	21472160	.	-	.	ID=Os10t0548700-02;Name=Os10t0548700-02;Locus_id=Os10g0548700;CGSNL Gene Symbol=RLCK306;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 306;Oryzabase Gene Symbol Synonym(s)=OsPUB54%2C OsRLCK306;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 54%2C U-box protein 54%2C Receptor-like Cytoplasmic Kinase 306;Note=Hypothetical conserved gene.;Transcript_evidence=AK065488 (DDBJ%2C Best hit);ORF_evidence=B8BI46 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),U box domain (IPR003613),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013005D18;Oryzabase=17845;Expression=AK065488;TENOR=Os10t0548700-02;KEGG=Os10t0548700-02
Chr10	irgsp1_rep	five_prime_UTR	21471596	21472160	.	-	.	Parent=Os10t0548700-02
Chr10	irgsp1_rep	CDS	21471467	21471595	.	-	0	Parent=Os10t0548700-02
Chr10	irgsp1_rep	CDS	21471263	21471384	.	-	0	Parent=Os10t0548700-02
Chr10	irgsp1_rep	CDS	21471075	21471179	.	-	1	Parent=Os10t0548700-02
Chr10	irgsp1_rep	CDS	21470489	21470900	.	-	1	Parent=Os10t0548700-02
Chr10	irgsp1_rep	CDS	21470273	21470413	.	-	0	Parent=Os10t0548700-02
Chr10	irgsp1_rep	CDS	21469651	21470199	.	-	0	Parent=Os10t0548700-02
Chr10	irgsp1_rep	CDS	21468800	21469564	.	-	0	Parent=Os10t0548700-02
Chr10	irgsp1_rep	CDS	21467895	21468095	.	-	0	Parent=Os10t0548700-02
Chr10	irgsp1_rep	three_prime_UTR	21467717	21467894	.	-	.	Parent=Os10t0548700-02
Chr10	irgsp1_rep	mRNA	21467911	21469879	.	+	.	ID=Os10t0548750-00;Name=Os10t0548750-00;Locus_id=Os10g0548750;Note=Hypothetical protein.;Transcript_evidence=tplb0060b15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0548750-00
Chr10	irgsp1_rep	five_prime_UTR	21467911	21468074	.	+	.	Parent=Os10t0548750-00
Chr10	irgsp1_rep	five_prime_UTR	21468783	21468850	.	+	.	Parent=Os10t0548750-00
Chr10	irgsp1_rep	CDS	21468851	21469087	.	+	0	Parent=Os10t0548750-00
Chr10	irgsp1_rep	three_prime_UTR	21469088	21469562	.	+	.	Parent=Os10t0548750-00
Chr10	irgsp1_rep	three_prime_UTR	21469649	21469879	.	+	.	Parent=Os10t0548750-00
Chr10	irgsp1_rep	mRNA	21473597	21477243	.	-	.	ID=Os10t0548800-01;Name=Os10t0548800-01;Locus_id=Os10g0548800;Note=Similar to Chloroplast outer envelope protein-like (Chloroplast outer envelope membrane-associated protein Toc120).;Transcript_evidence=AK072270 (DDBJ%2C Best hit);ORF_evidence=XP_002886061.1 (RefSeq);GO=Molecular Function: GTP binding (GO:0005525),Molecular Function: hydrolase activity%2C acting on acid anhydrides (GO:0016817);InterPro=Chloroplast protein import component Toc86/159 (IPR005690),AIG1 (IPR006703),Domain of unknown function DUF3406%2C chloroplast translocase (IPR024283);NIAS_FLcDNA=J023008M11;Expression=AK072270;TENOR=Os10t0548800-01;KEGG=Os10t0548800-01
Chr10	irgsp1_rep	five_prime_UTR	21477122	21477243	.	-	.	Parent=Os10t0548800-01
Chr10	irgsp1_rep	five_prime_UTR	21476915	21476937	.	-	.	Parent=Os10t0548800-01
Chr10	irgsp1_rep	CDS	21473888	21476914	.	-	0	Parent=Os10t0548800-01
Chr10	irgsp1_rep	three_prime_UTR	21473597	21473887	.	-	.	Parent=Os10t0548800-01
Chr10	irgsp1_rep	mRNA	21479425	21482015	.	-	.	ID=Os10t0548850-00;Name=Os10t0548850-00;Locus_id=Os10g0548850;Oryzabase Gene Symbol Synonym(s)=OsPUB58;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 58%2C U-box protein 58;Note=U box domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001176260.1 (RefSeq);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842);InterPro=U box domain (IPR003613),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);Oryzabase=17849;TENOR=Os10t0548850-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	21481847	21482015	.	-	0	Parent=Os10t0548850-00
Chr10	irgsp1_rep	CDS	21481467	21481588	.	-	2	Parent=Os10t0548850-00
Chr10	irgsp1_rep	CDS	21480918	21481039	.	-	0	Parent=Os10t0548850-00
Chr10	irgsp1_rep	CDS	21480500	21480620	.	-	1	Parent=Os10t0548850-00
Chr10	irgsp1_rep	CDS	21480268	21480408	.	-	0	Parent=Os10t0548850-00
Chr10	irgsp1_rep	CDS	21479819	21480163	.	-	0	Parent=Os10t0548850-00
Chr10	irgsp1_rep	CDS	21479425	21479622	.	-	0	Parent=Os10t0548850-00
Chr10	irgsp1_rep	mRNA	21482740	21486300	.	-	.	ID=Os10t0548900-01;Name=Os10t0548900-01;Locus_id=Os10g0548900;Note=UDP-N-acetylmuramoylalanyl-D-glutamate-2%2C6-diaminopimelate ligase domain containing protein.;Transcript_evidence=AK067162 (DDBJ%2C Best hit);ORF_evidence=NP_176555.4 (RefSeq);GO=Biological Process: regulation of cell shape (GO:0008360),Biological Process: biosynthetic process (GO:0009058),Biological Process: peptidoglycan biosynthetic process (GO:0009252),Biological Process: peptidoglycan-based cell wall biogenesis (GO:0009273),Biological Process: cell division (GO:0051301),Cellular Component: cytoplasm (GO:0005737),Molecular Function: ATP binding (GO:0005524),Molecular Function: ligase activity (GO:0016874),Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Mur ligase%2C C-terminal (IPR004101),UDP-N-acetylmuramoylalanyl-D-glutamate-2%2C6-diaminopimelate ligase (IPR005761),Mur ligase%2C central (IPR013221);NIAS_FLcDNA=J013095I09;TENOR=Os10t0548900-01
Chr10	irgsp1_rep	five_prime_UTR	21486279	21486300	.	-	.	Parent=Os10t0548900-01
Chr10	irgsp1_rep	CDS	21484463	21486278	.	-	0	Parent=Os10t0548900-01
Chr10	irgsp1_rep	CDS	21484237	21484353	.	-	2	Parent=Os10t0548900-01
Chr10	irgsp1_rep	CDS	21483963	21484138	.	-	2	Parent=Os10t0548900-01
Chr10	irgsp1_rep	CDS	21483287	21483432	.	-	0	Parent=Os10t0548900-01
Chr10	irgsp1_rep	CDS	21482950	21482968	.	-	1	Parent=Os10t0548900-01
Chr10	irgsp1_rep	three_prime_UTR	21482740	21482949	.	-	.	Parent=Os10t0548900-01
Chr10	irgsp1_rep	mRNA	21482753	21485101	.	-	.	ID=Os10t0548900-02;Name=Os10t0548900-02;Locus_id=Os10g0548900;Note=Similar to MURE%3B ATP binding / acid-amino acid ligase/ ligase.;Transcript_evidence=AK058225 (DDBJ%2C Best hit);ORF_evidence=NP_176555.4 (RefSeq);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: ATP binding (GO:0005524),Molecular Function: ligase activity (GO:0016874);InterPro=Mur ligase%2C C-terminal (IPR004101),Mur ligase%2C central (IPR013221);NIAS_FLcDNA=001-010-G12;TENOR=Os10t0548900-02
Chr10	irgsp1_rep	five_prime_UTR	21485100	21485101	.	-	.	Parent=Os10t0548900-02
Chr10	irgsp1_rep	CDS	21484463	21485099	.	-	0	Parent=Os10t0548900-02
Chr10	irgsp1_rep	CDS	21484237	21484353	.	-	2	Parent=Os10t0548900-02
Chr10	irgsp1_rep	CDS	21483963	21484138	.	-	2	Parent=Os10t0548900-02
Chr10	irgsp1_rep	CDS	21483287	21483432	.	-	0	Parent=Os10t0548900-02
Chr10	irgsp1_rep	CDS	21482950	21482968	.	-	1	Parent=Os10t0548900-02
Chr10	irgsp1_rep	three_prime_UTR	21482753	21482949	.	-	.	Parent=Os10t0548900-02
Chr10	irgsp1_rep	mRNA	21483285	21486308	.	+	.	ID=Os10t0549000-00;Name=Os10t0549000-00;Locus_id=Os10g0549000;Note=Hypothetical protein.;Transcript_evidence=tplb0043l09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0549000-00
Chr10	irgsp1_rep	five_prime_UTR	21483285	21483424	.	+	.	Parent=Os10t0549000-00
Chr10	irgsp1_rep	five_prime_UTR	21483954	21484138	.	+	.	Parent=Os10t0549000-00
Chr10	irgsp1_rep	five_prime_UTR	21484237	21484353	.	+	.	Parent=Os10t0549000-00
Chr10	irgsp1_rep	five_prime_UTR	21484463	21484555	.	+	.	Parent=Os10t0549000-00
Chr10	irgsp1_rep	CDS	21484556	21484921	.	+	0	Parent=Os10t0549000-00
Chr10	irgsp1_rep	three_prime_UTR	21484922	21486308	.	+	.	Parent=Os10t0549000-00
Chr10	irgsp1_rep	mRNA	21486842	21489738	.	-	.	ID=Os10t0549100-01;Name=Os10t0549100-01;Locus_id=Os10g0549100;Note=PapD-like domain containing protein.;Transcript_evidence=AK100377 (DDBJ%2C Best hit);ORF_evidence=XP_002863353.1 (RefSeq);GO=Molecular Function: structural molecule activity (GO:0005198);InterPro=Major sperm protein (IPR000535),PapD-like (IPR008962),Vesicle-associated membrane protein (IPR016763);NIAS_FLcDNA=J023085B19;Expression=AK100377;TENOR=Os10t0549100-01;KEGG=Os10t0549100-01
Chr10	irgsp1_rep	five_prime_UTR	21489626	21489738	.	-	.	Parent=Os10t0549100-01
Chr10	irgsp1_rep	five_prime_UTR	21489545	21489552	.	-	.	Parent=Os10t0549100-01
Chr10	irgsp1_rep	CDS	21489490	21489544	.	-	0	Parent=Os10t0549100-01
Chr10	irgsp1_rep	CDS	21489332	21489402	.	-	2	Parent=Os10t0549100-01
Chr10	irgsp1_rep	CDS	21489176	21489257	.	-	0	Parent=Os10t0549100-01
Chr10	irgsp1_rep	CDS	21488941	21489056	.	-	2	Parent=Os10t0549100-01
Chr10	irgsp1_rep	CDS	21488688	21488825	.	-	0	Parent=Os10t0549100-01
Chr10	irgsp1_rep	CDS	21488575	21488601	.	-	0	Parent=Os10t0549100-01
Chr10	irgsp1_rep	CDS	21487945	21488019	.	-	0	Parent=Os10t0549100-01
Chr10	irgsp1_rep	CDS	21487227	21487364	.	-	0	Parent=Os10t0549100-01
Chr10	irgsp1_rep	three_prime_UTR	21486842	21487226	.	-	.	Parent=Os10t0549100-01
Chr10	irgsp1_rep	mRNA	21520864	21524885	.	+	.	ID=Os10t0549500-00;Name=Os10t0549500-00;Locus_id=Os10g0549500;Note=Similar to Branched-chain-amino-acid aminotransferase.;Transcript_evidence=AK330986 (DDBJ);ORF_evidence=A2ZA03 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: branched chain family amino acid metabolic process (GO:0009081),Molecular Function: catalytic activity (GO:0003824),Molecular Function: branched-chain-amino-acid transaminase activity (GO:0004084);InterPro=Aminotransferase%2C class IV (IPR001544),Branched-chain amino acid aminotransferase II (IPR005786),Aminotransferase%2C class IV%2C conserved site (IPR018300);TENOR=Os10t0549500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	21520864	21521065	.	+	.	Parent=Os10t0549500-00
Chr10	irgsp1_rep	five_prime_UTR	21521187	21521215	.	+	.	Parent=Os10t0549500-00
Chr10	irgsp1_rep	CDS	21521216	21521362	.	+	0	Parent=Os10t0549500-00
Chr10	irgsp1_rep	CDS	21521458	21521589	.	+	0	Parent=Os10t0549500-00
Chr10	irgsp1_rep	CDS	21521862	21521960	.	+	0	Parent=Os10t0549500-00
Chr10	irgsp1_rep	CDS	21522369	21522485	.	+	0	Parent=Os10t0549500-00
Chr10	irgsp1_rep	CDS	21523587	21523682	.	+	0	Parent=Os10t0549500-00
Chr10	irgsp1_rep	CDS	21524095	21524207	.	+	0	Parent=Os10t0549500-00
Chr10	irgsp1_rep	CDS	21524765	21524885	.	+	1	Parent=Os10t0549500-00
Chr10	irgsp1_rep	mRNA	21526018	21533893	.	+	.	ID=Os10t0549550-00;Name=Os10t0549550-00;Locus_id=Os10g0549550;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G6W1 (UniProt);TENOR=Os10t0549550-00
Chr10	irgsp1_rep	CDS	21526018	21526218	.	+	0	Parent=Os10t0549550-00
Chr10	irgsp1_rep	CDS	21526349	21526437	.	+	0	Parent=Os10t0549550-00
Chr10	irgsp1_rep	CDS	21533692	21533893	.	+	1	Parent=Os10t0549550-00
Chr10	irgsp1_rep	mRNA	21529713	21529848	.	+	.	ID=Os10t0549600-00;Name=Os10t0549600-00;Locus_id=Os10g0549600;Note=Non-protein coding transcript.;Transcript_evidence=EU947769 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0549600-00
Chr10	irgsp1_rep	exon	21529713	21529848	.	+	.	Parent=Os10t0549600-00
Chr10	irgsp1_rep	mRNA	21530321	21530619	.	-	.	ID=Os10t0549650-00;Name=Os10t0549650-00;Locus_id=Os10g0549650;Note=Hypothetical protein.;Transcript_evidence=EU951562 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0549650-00
Chr10	irgsp1_rep	CDS	21530321	21530619	.	-	0	Parent=Os10t0549650-00
Chr10	irgsp1_rep	mRNA	21543495	21547308	.	+	.	ID=Os10t0549700-00;Name=Os10t0549700-00;Locus_id=Os10g0549700;Note=Protein of unknown function DUF3615 domain containing protein.;Transcript_evidence=AK371071 (DDBJ);ORF_evidence=NP_001176261.1 (RefSeq);InterPro=Protein of unknown function DUF3615 (IPR022059);TENOR=Os10t0549700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	21543495	21543602	.	+	0	Parent=Os10t0549700-00
Chr10	irgsp1_rep	CDS	21543778	21543970	.	+	0	Parent=Os10t0549700-00
Chr10	irgsp1_rep	CDS	21547170	21547300	.	+	2	Parent=Os10t0549700-00
Chr10	irgsp1_rep	three_prime_UTR	21547301	21547308	.	+	.	Parent=Os10t0549700-00
Chr10	irgsp1_rep	mRNA	21554333	21557722	.	+	.	ID=Os10t0549900-01;Name=Os10t0549900-01;Locus_id=Os10g0549900;Note=Protein of unknown function DUF1544 domain containing protein.;Transcript_evidence=AK122139 (DDBJ%2C Best hit);ORF_evidence=Q2QPA8 (UniProt);GO=Molecular Function: DNA binding (GO:0003677);InterPro=Zinc finger%2C BED-type predicted (IPR003656);NIAS_FLcDNA=J033136E13;Expression=AK122139;TENOR=Os10t0549900-01;KEGG=Os10t0549900-01
Chr10	irgsp1_rep	five_prime_UTR	21554333	21554621	.	+	.	Parent=Os10t0549900-01
Chr10	irgsp1_rep	CDS	21554622	21554637	.	+	0	Parent=Os10t0549900-01
Chr10	irgsp1_rep	CDS	21554918	21555489	.	+	2	Parent=Os10t0549900-01
Chr10	irgsp1_rep	three_prime_UTR	21555490	21556944	.	+	.	Parent=Os10t0549900-01
Chr10	irgsp1_rep	three_prime_UTR	21557062	21557722	.	+	.	Parent=Os10t0549900-01
Chr10	irgsp1_rep	mRNA	21558186	21563384	.	+	.	ID=Os10t0550000-01;Name=Os10t0550000-01;Locus_id=Os10g0550000;Note=Protein of unknown function DUF3741 domain containing protein.;Transcript_evidence=AK065729 (DDBJ%2C Best hit);ORF_evidence=A2ZA05 (UniProt);InterPro=Protein of unknown function DUF3741 (IPR022212);NIAS_FLcDNA=J013035P21;Expression=AK065729;TENOR=Os10t0550000-01;KEGG=Os10t0550000-01
Chr10	irgsp1_rep	five_prime_UTR	21558186	21558549	.	+	.	Parent=Os10t0550000-01
Chr10	irgsp1_rep	five_prime_UTR	21559114	21559218	.	+	.	Parent=Os10t0550000-01
Chr10	irgsp1_rep	CDS	21559219	21559375	.	+	0	Parent=Os10t0550000-01
Chr10	irgsp1_rep	CDS	21559796	21559854	.	+	2	Parent=Os10t0550000-01
Chr10	irgsp1_rep	CDS	21560101	21561670	.	+	0	Parent=Os10t0550000-01
Chr10	irgsp1_rep	CDS	21561759	21561886	.	+	2	Parent=Os10t0550000-01
Chr10	irgsp1_rep	CDS	21561969	21562209	.	+	0	Parent=Os10t0550000-01
Chr10	irgsp1_rep	CDS	21562336	21562886	.	+	2	Parent=Os10t0550000-01
Chr10	irgsp1_rep	three_prime_UTR	21562887	21563384	.	+	.	Parent=Os10t0550000-01
Chr10	irgsp1_rep	mRNA	21561764	21562891	.	-	.	ID=Os10t0550033-00;Name=Os10t0550033-00;Locus_id=Os10g0550033;Note=Non-protein coding transcript.;Transcript_evidence=EU948014 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0550033-00
Chr10	irgsp1_rep	exon	21561764	21562891	.	-	.	Parent=Os10t0550033-00
Chr10	irgsp1_rep	mRNA	21570015	21572927	.	+	.	ID=Os10t0550066-00;Name=Os10t0550066-00;Locus_id=Os10g0550066;Oryzabase Gene Symbol Synonym(s)=OsMED12_2%2C MED12_2;Oryzabase Gene Name Synonym(s)=Mediator 12_2;Note=Hypothetical conserved gene.;Transcript_evidence=BT067999 (DDBJ);ORF_evidence=XP_002466024.1 (RefSeq);GO=Biological Process: regulation of transcription from RNA polymerase II promoter (GO:0006357),Cellular Component: mediator complex (GO:0016592),Molecular Function: RNA polymerase II transcription cofactor activity (GO:0001104);InterPro=Mediator complex%2C subunit Med12 (IPR019035);Oryzabase=20970;TENOR=Os10t0550066-00;KEGG=Os10t0550066-00
Chr10	irgsp1_rep	CDS	21570015	21570155	.	+	0	Parent=Os10t0550066-00
Chr10	irgsp1_rep	CDS	21570362	21570433	.	+	0	Parent=Os10t0550066-00
Chr10	irgsp1_rep	CDS	21570951	21571004	.	+	0	Parent=Os10t0550066-00
Chr10	irgsp1_rep	CDS	21571253	21571360	.	+	0	Parent=Os10t0550066-00
Chr10	irgsp1_rep	CDS	21571829	21571982	.	+	0	Parent=Os10t0550066-00
Chr10	irgsp1_rep	CDS	21572090	21572109	.	+	2	Parent=Os10t0550066-00
Chr10	irgsp1_rep	three_prime_UTR	21572110	21572434	.	+	.	Parent=Os10t0550066-00
Chr10	irgsp1_rep	three_prime_UTR	21572537	21572927	.	+	.	Parent=Os10t0550066-00
Chr10	irgsp1_rep	mRNA	21577492	21580548	.	+	.	ID=Os10t0550100-01;Name=Os10t0550100-01;Locus_id=Os10g0550100;Oryzabase Gene Symbol Synonym(s)=OsMED12_2%2C MED12_2;Oryzabase Gene Name Synonym(s)=Mediator 12_2;Note=Conserved hypothetical protein.;Transcript_evidence=AK106583 (DDBJ%2C Best hit);ORF_evidence=Q94LW0 (UniProt);NIAS_FLcDNA=002-111-E06;Oryzabase=20970;Expression=AK106583;TENOR=Os10t0550100-01;KEGG=Os10t0550100-01
Chr10	irgsp1_rep	five_prime_UTR	21577492	21577493	.	+	.	Parent=Os10t0550100-01
Chr10	irgsp1_rep	CDS	21577494	21578779	.	+	0	Parent=Os10t0550100-01
Chr10	irgsp1_rep	CDS	21579348	21579618	.	+	1	Parent=Os10t0550100-01
Chr10	irgsp1_rep	CDS	21579732	21580166	.	+	0	Parent=Os10t0550100-01
Chr10	irgsp1_rep	three_prime_UTR	21580167	21580548	.	+	.	Parent=Os10t0550100-01
Chr10	irgsp1_rep	mRNA	21582183	21584421	.	+	.	ID=Os10t0550200-01;Name=Os10t0550200-01;Locus_id=Os10g0550200;Note=Protein of unknown function DUF3615 domain containing protein.;Transcript_evidence=AK066785 (DDBJ%2C Best hit);ORF_evidence=NP_001053626.1 (RefSeq);InterPro=Protein of unknown function DUF3615 (IPR022059);NIAS_FLcDNA=J013078M15;Expression=AK066785;TENOR=Os10t0550200-01;KEGG=Os10t0550200-01
Chr10	irgsp1_rep	five_prime_UTR	21582183	21582466	.	+	.	Parent=Os10t0550200-01
Chr10	irgsp1_rep	five_prime_UTR	21582591	21582805	.	+	.	Parent=Os10t0550200-01
Chr10	irgsp1_rep	five_prime_UTR	21582952	21582972	.	+	.	Parent=Os10t0550200-01
Chr10	irgsp1_rep	CDS	21582973	21583050	.	+	0	Parent=Os10t0550200-01
Chr10	irgsp1_rep	CDS	21583765	21583954	.	+	0	Parent=Os10t0550200-01
Chr10	irgsp1_rep	CDS	21584031	21584188	.	+	2	Parent=Os10t0550200-01
Chr10	irgsp1_rep	three_prime_UTR	21584189	21584421	.	+	.	Parent=Os10t0550200-01
Chr10	irgsp1_rep	mRNA	21584815	21587608	.	-	.	ID=Os10t0550300-00;Name=Os10t0550300-00;Locus_id=Os10g0550300;CGSNL Gene Symbol=ROPGEF1;CGSNL Gene Name=ROP-SPECIFIC GUANINE NUCLEOTIDE EXCHANGE FACTOR 1;Oryzabase Gene Symbol Synonym(s)=Os RopGEF1%2C OsRopGEF1%2C RopGEF1;Oryzabase Gene Name Synonym(s)=guanine nucleotide exchange factor for Rop 1%2C Rop-specific GEF1%2C Rop-specific guanine nucleotide exchange factor 1;Note=Rop nucleotide exchanger%2C PRONE domain containing protein.;Transcript_evidence=BT033836 (DDBJ);ORF_evidence=B4F9P8 (UniProt);GO=Molecular Function: Rho guanyl-nucleotide exchange factor activity (GO:0005089);InterPro=Plant specific Rop nucleotide exchanger%2C PRONE (IPR005512);Oryzabase=11443;TENOR=Os10t0550300-00;KEGG=Os10t0550300-00
Chr10	irgsp1_rep	CDS	21587170	21587608	.	-	0	Parent=Os10t0550300-00
Chr10	irgsp1_rep	CDS	21586930	21587084	.	-	2	Parent=Os10t0550300-00
Chr10	irgsp1_rep	CDS	21586750	21586824	.	-	0	Parent=Os10t0550300-00
Chr10	irgsp1_rep	CDS	21586357	21586665	.	-	0	Parent=Os10t0550300-00
Chr10	irgsp1_rep	CDS	21585537	21585881	.	-	0	Parent=Os10t0550300-00
Chr10	irgsp1_rep	CDS	21585008	21585124	.	-	0	Parent=Os10t0550300-00
Chr10	irgsp1_rep	three_prime_UTR	21584815	21585007	.	-	.	Parent=Os10t0550300-00
Chr10	irgsp1_rep	mRNA	21592730	21594176	.	+	.	ID=Os10t0550400-01;Name=Os10t0550400-01;Locus_id=Os10g0550400;Oryzabase Gene Name Synonym(s)=Hypothetical conserved gene;Note=Conserved hypothetical protein.;Transcript_evidence=AK109724 (DDBJ%2C Best hit);ORF_evidence=A2ZA10 (UniProt);NIAS_FLcDNA=002-146-B06;Oryzabase=22018;TENOR=Os10t0550400-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	21592730	21592750	.	+	.	Parent=Os10t0550400-01
Chr10	irgsp1_rep	CDS	21592751	21593923	.	+	0	Parent=Os10t0550400-01
Chr10	irgsp1_rep	three_prime_UTR	21593924	21594176	.	+	.	Parent=Os10t0550400-01
Chr10	irgsp1_rep	mRNA	21594279	21599492	.	-	.	ID=Os10t0550500-01;Name=Os10t0550500-01;Locus_id=Os10g0550500;Note=Similar to Pectinacetylesterase.;Transcript_evidence=AK064698 (DDBJ%2C Best hit);ORF_evidence=Q7XCE7 (UniProt);NIAS_FLcDNA=002-116-G02;Expression=AK064698;TENOR=Os10t0550500-01;KEGG=Os10t0550500-01
Chr10	irgsp1_rep	five_prime_UTR	21599240	21599492	.	-	.	Parent=Os10t0550500-01
Chr10	irgsp1_rep	CDS	21599113	21599239	.	-	0	Parent=Os10t0550500-01
Chr10	irgsp1_rep	CDS	21598644	21598856	.	-	2	Parent=Os10t0550500-01
Chr10	irgsp1_rep	CDS	21596995	21597074	.	-	2	Parent=Os10t0550500-01
Chr10	irgsp1_rep	CDS	21596788	21596874	.	-	0	Parent=Os10t0550500-01
Chr10	irgsp1_rep	CDS	21596406	21596534	.	-	0	Parent=Os10t0550500-01
Chr10	irgsp1_rep	three_prime_UTR	21596245	21596405	.	-	.	Parent=Os10t0550500-01
Chr10	irgsp1_rep	three_prime_UTR	21596098	21596154	.	-	.	Parent=Os10t0550500-01
Chr10	irgsp1_rep	three_prime_UTR	21595914	21595991	.	-	.	Parent=Os10t0550500-01
Chr10	irgsp1_rep	three_prime_UTR	21595715	21595820	.	-	.	Parent=Os10t0550500-01
Chr10	irgsp1_rep	three_prime_UTR	21595363	21595508	.	-	.	Parent=Os10t0550500-01
Chr10	irgsp1_rep	three_prime_UTR	21595172	21595282	.	-	.	Parent=Os10t0550500-01
Chr10	irgsp1_rep	three_prime_UTR	21594926	21595037	.	-	.	Parent=Os10t0550500-01
Chr10	irgsp1_rep	three_prime_UTR	21594279	21594425	.	-	.	Parent=Os10t0550500-01
Chr10	irgsp1_rep	mRNA	21606262	21610234	.	-	.	ID=Os10t0550725-01;Name=Os10t0550725-01;Locus_id=Os10g0550725;Note=Hypothetical gene.;Transcript_evidence=AK240685 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J043001P17;TENOR=Os10t0550725-01;KEGG=Os10t0550725-01
Chr10	irgsp1_rep	five_prime_UTR	21609530	21610234	.	-	.	Parent=Os10t0550725-01
Chr10	irgsp1_rep	five_prime_UTR	21607631	21609257	.	-	.	Parent=Os10t0550725-01
Chr10	irgsp1_rep	CDS	21607407	21607630	.	-	0	Parent=Os10t0550725-01
Chr10	irgsp1_rep	CDS	21606389	21606419	.	-	1	Parent=Os10t0550725-01
Chr10	irgsp1_rep	three_prime_UTR	21606262	21606388	.	-	.	Parent=Os10t0550725-01
Chr10	irgsp1_rep	mRNA	21607401	21609865	.	+	.	ID=Os10t0550750-00;Name=Os10t0550750-00;Locus_id=Os10g0550750;Note=Protein of unknown function DUF3527 domain containing protein.;Transcript_evidence=AK375090 (DDBJ);ORF_evidence=B9G6W8 (UniProt);InterPro=Protein of unknown function DUF3527 (IPR021916);TENOR=Os10t0550750-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	21607401	21609257	.	+	0	Parent=Os10t0550750-00
Chr10	irgsp1_rep	CDS	21609530	21609865	.	+	0	Parent=Os10t0550750-00
Chr10	irgsp1_rep	mRNA	21612230	21613509	.	+	.	ID=Os10t0550775-00;Name=Os10t0550775-00;Locus_id=Os10g0550775;Note=Conserved hypothetical protein.;Transcript_evidence=AK069527 (DDBJ%2C Secondary hit);ORF_evidence=Q8H3Y8 (UniProt);TENOR=Os10t0550775-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	21612230	21613247	.	+	.	Parent=Os10t0550775-00
Chr10	irgsp1_rep	CDS	21613248	21613388	.	+	0	Parent=Os10t0550775-00
Chr10	irgsp1_rep	three_prime_UTR	21613389	21613509	.	+	.	Parent=Os10t0550775-00
Chr10	irgsp1_rep	mRNA	21615390	21616752	.	+	.	ID=Os10t0550800-00;Name=Os10t0550800-00;Locus_id=Os10g0550800;Note=Hypothetical conserved gene.;Transcript_evidence=CT835754 (DDBJ%2C Best hit);ORF_evidence=Q9FWN2 (UniProt);TENOR=Os10t0550800-00;KEGG=Os10t0550800-00
Chr10	irgsp1_rep	five_prime_UTR	21615390	21615511	.	+	.	Parent=Os10t0550800-00
Chr10	irgsp1_rep	CDS	21615512	21615705	.	+	0	Parent=Os10t0550800-00
Chr10	irgsp1_rep	CDS	21615778	21615841	.	+	1	Parent=Os10t0550800-00
Chr10	irgsp1_rep	three_prime_UTR	21615842	21616752	.	+	.	Parent=Os10t0550800-00
Chr10	irgsp1_rep	mRNA	21618211	21620554	.	+	.	ID=Os10t0550900-01;Name=Os10t0550900-01;Locus_id=Os10g0550900;RAP-DB Gene Symbol Synonym(s)=OsProDH;RAP-DB Gene Name Synonym(s)=proline dehydrogenase;Oryzabase Gene Symbol Synonym(s)=OsProDH;Oryzabase Gene Name Synonym(s)=Proline dehydrogenase;Note=Proline dehydrogenase%2C Negative regulation of thermotolerance;Transcript_evidence=AK121010;ORF_evidence=Q336U3;InterPro=FAD-linked oxidoreductase-like (IPR029041),Proline dehydrogenase domain (IPR002872);NIAS_FLcDNA=J023047B13;Manual Curation=August 27%2C 2020;Literature_PMID=32845426;Oryzabase=14332;Expression=AK121010;TENOR=Os10t0550900-01;KEGG=Os10t0550900-01;Subcellular location=mitochondrion (GO:0005739)
Chr10	irgsp1_rep	five_prime_UTR	21618211	21618336	.	+	.	Parent=Os10t0550900-01
Chr10	irgsp1_rep	CDS	21618337	21618873	.	+	0	Parent=Os10t0550900-01
Chr10	irgsp1_rep	CDS	21619309	21620195	.	+	0	Parent=Os10t0550900-01
Chr10	irgsp1_rep	CDS	21620324	21620372	.	+	1	Parent=Os10t0550900-01
Chr10	irgsp1_rep	three_prime_UTR	21620373	21620554	.	+	.	Parent=Os10t0550900-01
Chr10	irgsp1_rep	mRNA	21623619	21630069	.	+	.	ID=Os10t0551100-01;Name=Os10t0551100-01;Locus_id=Os10g0551100;Note=Conserved hypothetical protein.;Transcript_evidence=AK106259 (DDBJ%2C Best hit);ORF_evidence=Q9FWN5 (UniProt);NIAS_FLcDNA=002-100-F05;Expression=AK106259;TENOR=Os10t0551100-01;KEGG=Os10t0551100-01
Chr10	irgsp1_rep	five_prime_UTR	21623619	21624168	.	+	.	Parent=Os10t0551100-01
Chr10	irgsp1_rep	five_prime_UTR	21624417	21624515	.	+	.	Parent=Os10t0551100-01
Chr10	irgsp1_rep	five_prime_UTR	21627310	21627396	.	+	.	Parent=Os10t0551100-01
Chr10	irgsp1_rep	five_prime_UTR	21629185	21629273	.	+	.	Parent=Os10t0551100-01
Chr10	irgsp1_rep	CDS	21629274	21629576	.	+	0	Parent=Os10t0551100-01
Chr10	irgsp1_rep	three_prime_UTR	21629577	21630069	.	+	.	Parent=Os10t0551100-01
Chr10	irgsp1_rep	mRNA	21623619	21624756	.	+	.	ID=Os10t0551100-02;Name=Os10t0551100-02;Locus_id=Os10g0551100;Note=Conserved hypothetical protein.;Transcript_evidence=AK106659 (DDBJ%2C Best hit);ORF_evidence=Q9FWN4 (UniProt);NIAS_FLcDNA=002-113-G10;TENOR=Os10t0551100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	21623619	21624137	.	+	.	Parent=Os10t0551100-02
Chr10	irgsp1_rep	CDS	21624138	21624449	.	+	0	Parent=Os10t0551100-02
Chr10	irgsp1_rep	three_prime_UTR	21624450	21624756	.	+	.	Parent=Os10t0551100-02
Chr10	irgsp1_rep	mRNA	21635191	21637744	.	-	.	ID=Os10t0551200-01;Name=Os10t0551200-01;Locus_id=Os10g0551200;CGSNL Gene Symbol=GRAS40;CGSNL Gene Name=GRAS PROTEIN 40;Oryzabase Gene Symbol Synonym(s)=OsGRAS-40%2C OsGRAS40%2C GRAS-40;Oryzabase Gene Name Synonym(s)=GRAS protein 40;Note=Similar to Scl1 protein (Fragment).;Transcript_evidence=AK106239 (DDBJ%2C Best hit);ORF_evidence=Q7XCD7 (UniProt);InterPro=Transcription factor GRAS (IPR005202);NIAS_FLcDNA=002-100-C09;Oryzabase=22811;Expression=AK106239;TENOR=Os10t0551200-01;KEGG=Os10t0551200-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	21637560	21637744	.	-	.	Parent=Os10t0551200-01
Chr10	irgsp1_rep	five_prime_UTR	21636807	21637002	.	-	.	Parent=Os10t0551200-01
Chr10	irgsp1_rep	CDS	21635610	21636806	.	-	0	Parent=Os10t0551200-01
Chr10	irgsp1_rep	three_prime_UTR	21635191	21635609	.	-	.	Parent=Os10t0551200-01
Chr10	irgsp1_rep	mRNA	21635603	21637934	.	+	.	ID=Os10t0551401-00;Name=Os10t0551401-00;Locus_id=Os10g0551401;Note=Conserved hypothetical protein.;Transcript_evidence=AK360819 (DDBJ);ORF_evidence=F2DAA6 (UniProt);TENOR=Os10t0551401-00
Chr10	irgsp1_rep	five_prime_UTR	21635603	21635658	.	+	.	Parent=Os10t0551401-00
Chr10	irgsp1_rep	CDS	21635659	21635943	.	+	0	Parent=Os10t0551401-00
Chr10	irgsp1_rep	three_prime_UTR	21635944	21637451	.	+	.	Parent=Os10t0551401-00
Chr10	irgsp1_rep	three_prime_UTR	21637523	21637934	.	+	.	Parent=Os10t0551401-00
Chr10	irgsp1_rep	mRNA	21652033	21654992	.	+	.	ID=Os10t0551600-01;Name=Os10t0551600-01;Locus_id=Os10g0551600;Note=Conserved hypothetical protein.;Transcript_evidence=AK062858 (DDBJ%2C Best hit);ORF_evidence=B8BI60 (UniProt);NIAS_FLcDNA=001-108-A11;Expression=AK062858;TENOR=Os10t0551600-01;KEGG=Os10t0551600-01
Chr10	irgsp1_rep	five_prime_UTR	21652033	21652107	.	+	.	Parent=Os10t0551600-01
Chr10	irgsp1_rep	CDS	21652108	21652245	.	+	0	Parent=Os10t0551600-01
Chr10	irgsp1_rep	CDS	21652376	21652462	.	+	0	Parent=Os10t0551600-01
Chr10	irgsp1_rep	CDS	21652549	21652644	.	+	0	Parent=Os10t0551600-01
Chr10	irgsp1_rep	CDS	21654674	21654730	.	+	0	Parent=Os10t0551600-01
Chr10	irgsp1_rep	three_prime_UTR	21654731	21654992	.	+	.	Parent=Os10t0551600-01
Chr10	irgsp1_rep	mRNA	21655489	21656252	.	-	.	ID=Os10t0551700-01;Name=Os10t0551700-01;Locus_id=Os10g0551700;CGSNL Gene Symbol=HYPRP33;CGSNL Gene Name=HYBRID PROLINE-RICH PROTEIN 33;Oryzabase Gene Symbol Synonym(s)=OsHyPRP33%2C HyPRP33;Oryzabase Gene Name Synonym(s)=plant lipid transfer protein%2C Hybrid Proline-Rich Protein 33;Note=Plant lipid transfer protein and hydrophobic protein%2C helical domain containing protein.;Transcript_evidence=AK107851 (DDBJ%2C Best hit);ORF_evidence=A2ZA19 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=002-134-A09;Oryzabase=23040;Expression=AK107851;TENOR=Os10t0551700-01;KEGG=Os10t0551700-01
Chr10	irgsp1_rep	five_prime_UTR	21656174	21656252	.	-	.	Parent=Os10t0551700-01
Chr10	irgsp1_rep	CDS	21655685	21656173	.	-	0	Parent=Os10t0551700-01
Chr10	irgsp1_rep	three_prime_UTR	21655489	21655684	.	-	.	Parent=Os10t0551700-01
Chr10	irgsp1_rep	mRNA	21658192	21658818	.	-	.	ID=Os10t0551800-00;Name=Os10t0551800-00;Locus_id=Os10g0551800;Oryzabase Gene Symbol Synonym(s)=RCc2%2C RCg2%2C OsHyPRP13%2C HyP/GRP13%2C HyPRP13%2C OsRCg2%2C OsHyPRP35%2C HyPRP35;Oryzabase Gene Name Synonym(s)=root-specific RCc2%2C hybrid proline- or glycine-rich protein 13%2C Hybrid Proline-Rich Protein 35;Note=Root-specific protein (RCc2 protein).;Transcript_evidence=L27209 (DDBJ%2C Best hit);ORF_evidence=A2ZA20 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);Oryzabase=10212;Expression=L27209;TENOR=Os10t0551800-00;KEGG=Os10t0551800-00
Chr10	irgsp1_rep	five_prime_UTR	21658789	21658818	.	-	.	Parent=Os10t0551800-00
Chr10	irgsp1_rep	CDS	21658348	21658788	.	-	0	Parent=Os10t0551800-00
Chr10	irgsp1_rep	three_prime_UTR	21658192	21658347	.	-	.	Parent=Os10t0551800-00
Chr10	irgsp1_rep	mRNA	21662454	21663219	.	-	.	ID=Os10t0551900-01;Name=Os10t0551900-01;Locus_id=Os10g0551900;Oryzabase Gene Symbol Synonym(s)=OsHyPRP14%2C HyP/GRP14;Oryzabase Gene Name Synonym(s)=hybrid proline- or glycine-rich protein 14;Note=Plant lipid transfer protein and hydrophobic protein%2C helical domain containing protein.;Transcript_evidence=AK102086 (DDBJ%2C Best hit);ORF_evidence=Q42474 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=J033082M21;Oryzabase=18614;Expression=AK102086;TENOR=Os10t0551900-01;KEGG=Os10t0551900-01
Chr10	irgsp1_rep	five_prime_UTR	21663144	21663219	.	-	.	Parent=Os10t0551900-01
Chr10	irgsp1_rep	CDS	21662715	21663143	.	-	0	Parent=Os10t0551900-01
Chr10	irgsp1_rep	three_prime_UTR	21662454	21662714	.	-	.	Parent=Os10t0551900-01
Chr10	irgsp1_rep	mRNA	21670510	21671244	.	-	.	ID=Os10t0552200-01;Name=Os10t0552200-01;Locus_id=Os10g0552200;CGSNL Gene Symbol=HYPRP16;CGSNL Gene Name=HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 16;Oryzabase Gene Symbol Synonym(s)=OsHyPRP16%2C HyP/GRP16%2C OsHyPRP37%2C HyPRP37;Oryzabase Gene Name Synonym(s)=hybrid proline- or glycine-rich protein 16%2C Hybrid Proline-Rich Protein 37;Note=Plant lipid transfer protein and hydrophobic protein%2C helical domain containing protein.;Transcript_evidence=AK287680 (DDBJ%2C Best hit);ORF_evidence=Q42474 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=J065123I03;Oryzabase=18616;TENOR=Os10t0552200-01;KEGG=Os10t0552200-01
Chr10	irgsp1_rep	five_prime_UTR	21671153	21671244	.	-	.	Parent=Os10t0552200-01
Chr10	irgsp1_rep	CDS	21670757	21671152	.	-	0	Parent=Os10t0552200-01
Chr10	irgsp1_rep	three_prime_UTR	21670510	21670756	.	-	.	Parent=Os10t0552200-01
Chr10	irgsp1_rep	mRNA	21674707	21675375	.	-	.	ID=Os10t0552300-01;Name=Os10t0552300-01;Locus_id=Os10g0552300;CGSNL Gene Symbol=HYPRP17;CGSNL Gene Name=HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 17;Oryzabase Gene Symbol Synonym(s)=OsHyPRP17%2C HyP/GRP17%2C OsHyPRP38%2C HyPRP38;Oryzabase Gene Name Synonym(s)=hybrid proline- or glycine-rich protein 17%2C Hybrid Proline-Rich Protein 38;Note=Conserved hypothetical protein.;Transcript_evidence=AK241511 (DDBJ%2C Best hit);ORF_evidence=A3C749 (UniProt);NIAS_FLcDNA=J065168H23;Oryzabase=18617;TENOR=Os10t0552300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	21675311	21675375	.	-	.	Parent=Os10t0552300-01
Chr10	irgsp1_rep	CDS	21674825	21675310	.	-	0	Parent=Os10t0552300-01
Chr10	irgsp1_rep	three_prime_UTR	21674707	21674824	.	-	.	Parent=Os10t0552300-01
Chr10	irgsp1_rep	mRNA	21679094	21681430	.	+	.	ID=Os10t0552400-01;Name=Os10t0552400-01;Locus_id=Os10g0552400;RAP-DB Gene Symbol Synonym(s)=OsPUB67;Oryzabase Gene Symbol Synonym(s)=OsPUB67;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 67%2C U-box protein 67;Note=U-box E3 ubiquitin ligase%2C Drought tolerance;Transcript_evidence=AK121815;ORF_evidence=Q336U1;GO=Biological Process: protein ubiquitination (GO:0016567),Molecular Function: ubiquitin-protein transferase activity (GO:0004842);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),U box domain (IPR003613);NIAS_FLcDNA=J033098H05;Manual Curation=January 24%2C 2020;Literature_PMID=31768809;Oryzabase=17858;Expression=AK121815;TENOR=Os10t0552400-01;KEGG=Os10t0552400-01;Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737), membrane (GO:0016020)
Chr10	irgsp1_rep	five_prime_UTR	21679094	21679105	.	+	.	Parent=Os10t0552400-01
Chr10	irgsp1_rep	CDS	21679106	21679250	.	+	0	Parent=Os10t0552400-01
Chr10	irgsp1_rep	CDS	21679463	21679584	.	+	2	Parent=Os10t0552400-01
Chr10	irgsp1_rep	CDS	21679714	21679835	.	+	0	Parent=Os10t0552400-01
Chr10	irgsp1_rep	CDS	21679950	21680054	.	+	1	Parent=Os10t0552400-01
Chr10	irgsp1_rep	CDS	21680142	21680232	.	+	1	Parent=Os10t0552400-01
Chr10	irgsp1_rep	CDS	21680329	21680472	.	+	0	Parent=Os10t0552400-01
Chr10	irgsp1_rep	CDS	21680590	21680958	.	+	0	Parent=Os10t0552400-01
Chr10	irgsp1_rep	CDS	21681077	21681274	.	+	0	Parent=Os10t0552400-01
Chr10	irgsp1_rep	three_prime_UTR	21681275	21681430	.	+	.	Parent=Os10t0552400-01
Chr10	irgsp1_rep	mRNA	21690332	21691088	.	-	.	ID=Os10t0552600-01;Name=Os10t0552600-01;Locus_id=Os10g0552600;CGSNL Gene Symbol=HYPRP18;CGSNL Gene Name=HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 18;Oryzabase Gene Symbol Synonym(s)=OsHyPRP18%2C HyP/GRP18%2C OsHyPRP39%2C HyPRP39;Oryzabase Gene Name Synonym(s)=hybrid proline- or glycine-rich protein 18%2C Hybrid Proline-Rich Protein 39;Note=Similar to Tfm5 protein.;Transcript_evidence=AK062911 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=001-108-G07;Oryzabase=18618;Expression=AK062911;TENOR=Os10t0552600-01;KEGG=Os10t0552600-01
Chr10	irgsp1_rep	five_prime_UTR	21691002	21691088	.	-	.	Parent=Os10t0552600-01
Chr10	irgsp1_rep	CDS	21690600	21691001	.	-	0	Parent=Os10t0552600-01
Chr10	irgsp1_rep	three_prime_UTR	21690332	21690599	.	-	.	Parent=Os10t0552600-01
Chr10	irgsp1_rep	mRNA	21693876	21694502	.	-	.	ID=Os10t0552700-01;Name=Os10t0552700-01;Locus_id=Os10g0552700;CGSNL Gene Symbol=HYPRP19;CGSNL Gene Name=HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 19;Oryzabase Gene Symbol Synonym(s)=OsHyPRP19%2C HyP/GRP19%2C OsHyPRP40%2C HyPRP40;Oryzabase Gene Name Synonym(s)=hybrid proline- or glycine-rich protein 19%2C Hybrid Proline-Rich Protein 40;Note=Similar to Tumor-related protein (Fragment).;Transcript_evidence=AK063090 (DDBJ%2C Best hit);ORF_evidence=B6U436 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=001-111-A12;Oryzabase=18619;Expression=AK063090;TENOR=Os10t0552700-01;KEGG=Os10t0552700-01
Chr10	irgsp1_rep	five_prime_UTR	21694418	21694502	.	-	.	Parent=Os10t0552700-01
Chr10	irgsp1_rep	CDS	21694043	21694417	.	-	0	Parent=Os10t0552700-01
Chr10	irgsp1_rep	three_prime_UTR	21693876	21694042	.	-	.	Parent=Os10t0552700-01
Chr10	irgsp1_rep	mRNA	21697077	21697778	.	-	.	ID=Os10t0552800-01;Name=Os10t0552800-01;Locus_id=Os10g0552800;CGSNL Gene Symbol=HYPRP20;CGSNL Gene Name=HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 20;Oryzabase Gene Symbol Synonym(s)=OsHyPRP20%2C HyP/GRP20%2C OsHyPRP41%2C HyPRP41;Oryzabase Gene Name Synonym(s)=hybrid proline- or glycine-rich protein 20%2C Hybrid Proline-Rich Protein 41;Note=Similar to Tfm5 protein.;Transcript_evidence=AK062381 (DDBJ%2C Best hit);ORF_evidence=B6U436 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=001-102-B09;Oryzabase=18620;Expression=AK062381;TENOR=Os10t0552800-01;KEGG=Os10t0552800-01
Chr10	irgsp1_rep	five_prime_UTR	21697710	21697778	.	-	.	Parent=Os10t0552800-01
Chr10	irgsp1_rep	CDS	21697311	21697709	.	-	0	Parent=Os10t0552800-01
Chr10	irgsp1_rep	three_prime_UTR	21697077	21697310	.	-	.	Parent=Os10t0552800-01
Chr10	irgsp1_rep	mRNA	21700753	21704799	.	-	.	ID=Os10t0552900-01;Name=Os10t0552900-01;Locus_id=Os10g0552900;Note=Crotonase%2C core domain containing protein.;Transcript_evidence=AK068963 (DDBJ%2C Best hit),AK099250 (DDBJ%2C Best hit);ORF_evidence=XP_002867278.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Crotonase%2C core (IPR001753);NIAS_FLcDNA=J023002D14,J013140N04;TENOR=Os10t0552900-01
Chr10	irgsp1_rep	five_prime_UTR	21704754	21704799	.	-	.	Parent=Os10t0552900-01
Chr10	irgsp1_rep	CDS	21704613	21704753	.	-	0	Parent=Os10t0552900-01
Chr10	irgsp1_rep	CDS	21704438	21704518	.	-	0	Parent=Os10t0552900-01
Chr10	irgsp1_rep	CDS	21704034	21704102	.	-	0	Parent=Os10t0552900-01
Chr10	irgsp1_rep	CDS	21703897	21703960	.	-	0	Parent=Os10t0552900-01
Chr10	irgsp1_rep	CDS	21703467	21703546	.	-	2	Parent=Os10t0552900-01
Chr10	irgsp1_rep	CDS	21703300	21703383	.	-	0	Parent=Os10t0552900-01
Chr10	irgsp1_rep	CDS	21703055	21703139	.	-	0	Parent=Os10t0552900-01
Chr10	irgsp1_rep	CDS	21702848	21702933	.	-	2	Parent=Os10t0552900-01
Chr10	irgsp1_rep	CDS	21702622	21702743	.	-	0	Parent=Os10t0552900-01
Chr10	irgsp1_rep	CDS	21701999	21702059	.	-	1	Parent=Os10t0552900-01
Chr10	irgsp1_rep	CDS	21701589	21701687	.	-	0	Parent=Os10t0552900-01
Chr10	irgsp1_rep	CDS	21701402	21701503	.	-	0	Parent=Os10t0552900-01
Chr10	irgsp1_rep	CDS	21701199	21701240	.	-	0	Parent=Os10t0552900-01
Chr10	irgsp1_rep	CDS	21700973	21701092	.	-	0	Parent=Os10t0552900-01
Chr10	irgsp1_rep	three_prime_UTR	21700753	21700972	.	-	.	Parent=Os10t0552900-01
Chr10	irgsp1_rep	mRNA	21707054	21710973	.	-	.	ID=Os10t0553300-01;Name=Os10t0553300-01;Locus_id=Os10g0553300;CGSNL Gene Symbol=TPP2;CGSNL Gene Name=TREHALOSE-6-PHOSPHATE PHOSHPHATASE 2;Oryzabase Gene Symbol Synonym(s)=OsTPP2;Oryzabase Gene Name Synonym(s)=trehalose-6-phosphate phosphatase 2;Note=Similar to Trehalose-6-phosphate phosphatase.;Transcript_evidence=AK069361 (DDBJ%2C Best hit);ORF_evidence=NP_001152222.1 (RefSeq);GO=Biological Process: trehalose biosynthetic process (GO:0005992),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Trehalose-phosphatase (IPR003337),HAD-superfamily hydrolase%2C subfamily IIB (IPR006379),HAD-like domain (IPR023214);NIAS_FLcDNA=J023014P21;Oryzabase=9038;Expression=AK069361;TENOR=Os10t0553300-01;KEGG=Os10t0553300-01
Chr10	irgsp1_rep	five_prime_UTR	21710860	21710973	.	-	.	Parent=Os10t0553300-01
Chr10	irgsp1_rep	five_prime_UTR	21709627	21709726	.	-	.	Parent=Os10t0553300-01
Chr10	irgsp1_rep	five_prime_UTR	21709350	21709546	.	-	.	Parent=Os10t0553300-01
Chr10	irgsp1_rep	CDS	21709065	21709349	.	-	0	Parent=Os10t0553300-01
Chr10	irgsp1_rep	CDS	21708842	21708982	.	-	0	Parent=Os10t0553300-01
Chr10	irgsp1_rep	CDS	21708682	21708753	.	-	0	Parent=Os10t0553300-01
Chr10	irgsp1_rep	CDS	21708455	21708583	.	-	0	Parent=Os10t0553300-01
Chr10	irgsp1_rep	CDS	21708313	21708369	.	-	0	Parent=Os10t0553300-01
Chr10	irgsp1_rep	CDS	21708125	21708226	.	-	0	Parent=Os10t0553300-01
Chr10	irgsp1_rep	CDS	21707959	21708036	.	-	0	Parent=Os10t0553300-01
Chr10	irgsp1_rep	CDS	21707724	21707864	.	-	0	Parent=Os10t0553300-01
Chr10	irgsp1_rep	CDS	21707536	21707628	.	-	0	Parent=Os10t0553300-01
Chr10	irgsp1_rep	CDS	21707372	21707422	.	-	0	Parent=Os10t0553300-01
Chr10	irgsp1_rep	three_prime_UTR	21707054	21707371	.	-	.	Parent=Os10t0553300-01
Chr10	irgsp1_rep	mRNA	21721801	21723246	.	+	.	ID=Os10t0553600-00;Name=Os10t0553600-00;Locus_id=Os10g0553600;Note=Exostosin-like family protein.;Transcript_evidence=AK375445 (DDBJ);ORF_evidence=C3SAB7 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);TENOR=Os10t0553600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	21721801	21721806	.	+	.	Parent=Os10t0553600-00
Chr10	irgsp1_rep	CDS	21721807	21723198	.	+	0	Parent=Os10t0553600-00
Chr10	irgsp1_rep	three_prime_UTR	21723199	21723246	.	+	.	Parent=Os10t0553600-00
Chr10	irgsp1_rep	mRNA	21724435	21727179	.	-	.	ID=Os10t0553800-01;Name=Os10t0553800-01;Locus_id=Os10g0553800;Note=Flavin-containing monooxygenase FMO family protein.;Transcript_evidence=AK120878 (DDBJ%2C Best hit);ORF_evidence=NP_001150817.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: flavin-containing monooxygenase activity (GO:0004499),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=Flavin monooxygenase FMO (IPR000960),Flavin monooxygenase-like (IPR020946);NIAS_FLcDNA=J023027I19;Expression=AK120878;TENOR=Os10t0553800-01;KEGG=Os10t0553800-01
Chr10	irgsp1_rep	five_prime_UTR	21727119	21727179	.	-	.	Parent=Os10t0553800-01
Chr10	irgsp1_rep	CDS	21726467	21727118	.	-	0	Parent=Os10t0553800-01
Chr10	irgsp1_rep	CDS	21726057	21726127	.	-	2	Parent=Os10t0553800-01
Chr10	irgsp1_rep	CDS	21725819	21725971	.	-	0	Parent=Os10t0553800-01
Chr10	irgsp1_rep	CDS	21725633	21725715	.	-	0	Parent=Os10t0553800-01
Chr10	irgsp1_rep	CDS	21725291	21725426	.	-	1	Parent=Os10t0553800-01
Chr10	irgsp1_rep	CDS	21725002	21725175	.	-	0	Parent=Os10t0553800-01
Chr10	irgsp1_rep	CDS	21724683	21724862	.	-	0	Parent=Os10t0553800-01
Chr10	irgsp1_rep	three_prime_UTR	21724435	21724682	.	-	.	Parent=Os10t0553800-01
Chr10	irgsp1_rep	mRNA	21731157	21736798	.	+	.	ID=Os10t0553900-01;Name=Os10t0553900-01;Locus_id=Os10g0553900;Note=Protein of unknown function DUF863%2C plant family protein.;Transcript_evidence=AK100717 (DDBJ%2C Best hit);ORF_evidence=A2ZA32 (UniProt);InterPro=Protein of unknown function DUF863%2C plant (IPR008581);NIAS_FLcDNA=J023115O15;Expression=AK100717;TENOR=Os10t0553900-01;KEGG=Os10t0553900-01
Chr10	irgsp1_rep	five_prime_UTR	21731157	21731277	.	+	.	Parent=Os10t0553900-01
Chr10	irgsp1_rep	five_prime_UTR	21731372	21731589	.	+	.	Parent=Os10t0553900-01
Chr10	irgsp1_rep	CDS	21731590	21731935	.	+	0	Parent=Os10t0553900-01
Chr10	irgsp1_rep	CDS	21735108	21736534	.	+	2	Parent=Os10t0553900-01
Chr10	irgsp1_rep	three_prime_UTR	21736535	21736798	.	+	.	Parent=Os10t0553900-01
Chr10	irgsp1_rep	mRNA	21735680	21736815	.	+	.	ID=Os10t0553900-02;Name=Os10t0553900-02;Locus_id=Os10g0553900;Note=Hypothetical conserved gene.;Transcript_evidence=AK060446 (DDBJ%2C Best hit);ORF_evidence=A2ZA32 (UniProt);InterPro=Protein of unknown function DUF863%2C plant (IPR008581);NIAS_FLcDNA=001-011-F02;Expression=AK060446;TENOR=Os10t0553900-02;KEGG=Os10t0553900-02
Chr10	irgsp1_rep	CDS	21735680	21736534	.	+	0	Parent=Os10t0553900-02
Chr10	irgsp1_rep	three_prime_UTR	21736535	21736815	.	+	.	Parent=Os10t0553900-02
Chr10	irgsp1_rep	mRNA	21741488	21743265	.	-	.	ID=Os10t0554001-01;Name=Os10t0554001-01;Locus_id=Os10g0554001;Note=Conserved hypothetical protein.;Transcript_evidence=AK241484 (DDBJ%2C Best hit);ORF_evidence=Q109A0 (UniProt);NIAS_FLcDNA=J065166J16;TENOR=Os10t0554001-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	21742823	21743265	.	-	.	Parent=Os10t0554001-01
Chr10	irgsp1_rep	CDS	21742274	21742822	.	-	0	Parent=Os10t0554001-01
Chr10	irgsp1_rep	three_prime_UTR	21741488	21742273	.	-	.	Parent=Os10t0554001-01
Chr10	irgsp1_rep	mRNA	21749775	21754410	.	-	.	ID=Os10t0554050-00;Name=Os10t0554050-00;Locus_id=Os10g0554050;Note=Non-protein coding transcript.;Transcript_evidence=tplb0022l14 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os10t0554050-00
Chr10	irgsp1_rep	exon	21754247	21754410	.	-	.	Parent=Os10t0554050-00
Chr10	irgsp1_rep	exon	21753915	21753979	.	-	.	Parent=Os10t0554050-00
Chr10	irgsp1_rep	exon	21753547	21753830	.	-	.	Parent=Os10t0554050-00
Chr10	irgsp1_rep	exon	21753358	21753462	.	-	.	Parent=Os10t0554050-00
Chr10	irgsp1_rep	exon	21753023	21753202	.	-	.	Parent=Os10t0554050-00
Chr10	irgsp1_rep	exon	21752660	21752801	.	-	.	Parent=Os10t0554050-00
Chr10	irgsp1_rep	exon	21751969	21752415	.	-	.	Parent=Os10t0554050-00
Chr10	irgsp1_rep	exon	21750944	21751427	.	-	.	Parent=Os10t0554050-00
Chr10	irgsp1_rep	exon	21749775	21749932	.	-	.	Parent=Os10t0554050-00
Chr10	irgsp1_rep	mRNA	21752345	21754855	.	+	.	ID=Os10t0554100-01;Name=Os10t0554100-01;Locus_id=Os10g0554100;Note=Similar to Oxysterol-binding protein.;Transcript_evidence=AK071048 (DDBJ%2C Best hit);ORF_evidence=C3SAC1 (UniProt);InterPro=Oxysterol-binding protein (IPR000648);NIAS_FLcDNA=J023075N18;TENOR=Os10t0554100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	21752345	21752346	.	+	.	Parent=Os10t0554100-01
Chr10	irgsp1_rep	CDS	21752347	21752445	.	+	0	Parent=Os10t0554100-01
Chr10	irgsp1_rep	CDS	21752654	21752809	.	+	0	Parent=Os10t0554100-01
Chr10	irgsp1_rep	CDS	21753026	21753193	.	+	0	Parent=Os10t0554100-01
Chr10	irgsp1_rep	CDS	21753347	21753487	.	+	0	Parent=Os10t0554100-01
Chr10	irgsp1_rep	CDS	21753570	21753806	.	+	0	Parent=Os10t0554100-01
Chr10	irgsp1_rep	CDS	21753887	21754000	.	+	0	Parent=Os10t0554100-01
Chr10	irgsp1_rep	CDS	21754273	21754449	.	+	0	Parent=Os10t0554100-01
Chr10	irgsp1_rep	three_prime_UTR	21754450	21754855	.	+	.	Parent=Os10t0554100-01
Chr10	irgsp1_rep	mRNA	21757771	21762202	.	-	.	ID=Os10t0554200-01;Name=Os10t0554200-01;Locus_id=Os10g0554200;CGSNL Gene Symbol=NPF6.5;CGSNL Gene Name=NRT1/PTR FAMILY 6.5;Oryzabase Gene Symbol Synonym(s)=OsNRT1.1B%2C NRT1.1B%2C OsNPF6.5;Oryzabase Gene Name Synonym(s)=nitrate transporter 1.1B;Note=TGF-beta receptor%2C type I/II extracellular region family protein.;Transcript_evidence=AK105765 (DDBJ%2C Best hit);ORF_evidence=C3SAC2 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=001-202-E01;Oryzabase=19895;Expression=AK105765;TENOR=Os10t0554200-01;KEGG=Os10t0554200-01
Chr10	irgsp1_rep	five_prime_UTR	21762112	21762202	.	-	.	Parent=Os10t0554200-01
Chr10	irgsp1_rep	CDS	21761978	21762111	.	-	0	Parent=Os10t0554200-01
Chr10	irgsp1_rep	CDS	21761185	21761583	.	-	1	Parent=Os10t0554200-01
Chr10	irgsp1_rep	CDS	21758281	21759145	.	-	1	Parent=Os10t0554200-01
Chr10	irgsp1_rep	three_prime_UTR	21757771	21758280	.	-	.	Parent=Os10t0554200-01
Chr10	irgsp1_rep	mRNA	21758010	21762202	.	-	.	ID=Os10t0554200-02;Name=Os10t0554200-02;Locus_id=Os10g0554200;RAP-DB Gene Symbol Synonym(s)=NRT1.1B%2C OsNRT1.1B%2C OsNPF6.5%2C NPF6.5;RAP-DB Gene Name Synonym(s)=nitrate transporter 1.1B;CGSNL Gene Symbol=NPF6.5;CGSNL Gene Name=NRT1/PTR FAMILY 6.5;Oryzabase Gene Symbol Synonym(s)=OsNRT1.1B%2C NRT1.1B%2C OsNPF6.5;Oryzabase Gene Name Synonym(s)=nitrate transporter 1.1B;Note=Nitrate transporter%2C Nitrate uptake%2C Nitrate transport;Transcript_evidence=AK068409;ORF_evidence=Q336T8;GO=Biological Process: transport (GO:0006810),Molecular Function: transporter activity (GO:0005215),Cellular Component: membrane (GO:0016020);InterPro=Proton-dependent oligopeptide transporter family (IPR000109),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J013147D24;Manual Curation=October 21%2C 2015;Literature_PMID=26053497;Oryzabase=19895;Expression=AK068409;TENOR=Os10t0554200-02;KEGG=Os10t0554200-02
Chr10	irgsp1_rep	five_prime_UTR	21762111	21762202	.	-	.	Parent=Os10t0554200-02
Chr10	irgsp1_rep	CDS	21761185	21762110	.	-	0	Parent=Os10t0554200-02
Chr10	irgsp1_rep	CDS	21758281	21759145	.	-	1	Parent=Os10t0554200-02
Chr10	irgsp1_rep	three_prime_UTR	21758117	21758280	.	-	.	Parent=Os10t0554200-02
Chr10	irgsp1_rep	three_prime_UTR	21758010	21758110	.	-	.	Parent=Os10t0554200-02
Chr10	irgsp1_rep	mRNA	21774188	21776862	.	-	.	ID=Os10t0554300-00;Name=Os10t0554300-00;Locus_id=Os10g0554300;Note=Flavin monooxygenase-like domain containing protein.;Transcript_evidence=AK375930 (DDBJ);ORF_evidence=A2ZA37 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: flavin-containing monooxygenase activity (GO:0004499),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=Flavin monooxygenase-like (IPR020946);TENOR=Os10t0554300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	21776235	21776862	.	-	0	Parent=Os10t0554300-00
Chr10	irgsp1_rep	CDS	21776011	21776081	.	-	2	Parent=Os10t0554300-00
Chr10	irgsp1_rep	CDS	21775770	21775919	.	-	0	Parent=Os10t0554300-00
Chr10	irgsp1_rep	CDS	21774735	21774988	.	-	0	Parent=Os10t0554300-00
Chr10	irgsp1_rep	CDS	21774469	21774642	.	-	1	Parent=Os10t0554300-00
Chr10	irgsp1_rep	CDS	21774188	21774365	.	-	1	Parent=Os10t0554300-00
Chr10	irgsp1_rep	mRNA	21786115	21787034	.	+	.	ID=Os10t0554800-01;Name=Os10t0554800-01;Locus_id=Os10g0554800;CGSNL Gene Symbol=HYPRP21;CGSNL Gene Name=HYBRID PROLINE- OR GLYCINE-RICH PROTEIN 21;Oryzabase Gene Symbol Synonym(s)=OsHyPRP21%2C HyP/GRP21%2C OsHyPRP42%2C HyPRP42;Oryzabase Gene Name Synonym(s)=hybrid proline- or glycine-rich protein 21%2C Hybrid Proline-Rich Protein 42;Note=Plant lipid transfer protein and hydrophobic protein%2C helical domain containing protein.;Transcript_evidence=AK063684 (DDBJ%2C Best hit);ORF_evidence=A2ZA38 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=001-119-E11;Oryzabase=18621;Expression=AK063684;TENOR=Os10t0554800-01;KEGG=Os10t0554800-01
Chr10	irgsp1_rep	five_prime_UTR	21786115	21786210	.	+	.	Parent=Os10t0554800-01
Chr10	irgsp1_rep	CDS	21786211	21786498	.	+	0	Parent=Os10t0554800-01
Chr10	irgsp1_rep	CDS	21786619	21786714	.	+	0	Parent=Os10t0554800-01
Chr10	irgsp1_rep	three_prime_UTR	21786715	21787034	.	+	.	Parent=Os10t0554800-01
Chr10	irgsp1_rep	mRNA	21787641	21790244	.	-	.	ID=Os10t0554900-01;Name=Os10t0554900-01;Locus_id=Os10g0554900;Note=Protein of unknown function DUF566 family protein.;Transcript_evidence=AK120846 (DDBJ%2C Best hit);ORF_evidence=B8BI64 (UniProt);InterPro=Protein of unknown function DUF566 (IPR007573);NIAS_FLcDNA=J023022N01;TENOR=Os10t0554900-01
Chr10	irgsp1_rep	five_prime_UTR	21790079	21790244	.	-	.	Parent=Os10t0554900-01
Chr10	irgsp1_rep	CDS	21789512	21790078	.	-	0	Parent=Os10t0554900-01
Chr10	irgsp1_rep	CDS	21789187	21789423	.	-	0	Parent=Os10t0554900-01
Chr10	irgsp1_rep	CDS	21789004	21789093	.	-	0	Parent=Os10t0554900-01
Chr10	irgsp1_rep	CDS	21788566	21788673	.	-	0	Parent=Os10t0554900-01
Chr10	irgsp1_rep	CDS	21788173	21788280	.	-	0	Parent=Os10t0554900-01
Chr10	irgsp1_rep	three_prime_UTR	21787641	21788172	.	-	.	Parent=Os10t0554900-01
Chr10	irgsp1_rep	mRNA	21787628	21789595	.	-	.	ID=Os10t0554900-02;Name=Os10t0554900-02;Locus_id=Os10g0554900;Note=Protein of unknown function DUF566 domain containing protein.;Transcript_evidence=AK059811 (DDBJ%2C Best hit);ORF_evidence=A3C769 (UniProt);InterPro=Protein of unknown function DUF566 (IPR007573);NIAS_FLcDNA=006-205-B03;TENOR=Os10t0554900-02
Chr10	irgsp1_rep	CDS	21789512	21789595	.	-	0	Parent=Os10t0554900-02
Chr10	irgsp1_rep	CDS	21789187	21789423	.	-	0	Parent=Os10t0554900-02
Chr10	irgsp1_rep	CDS	21789004	21789093	.	-	0	Parent=Os10t0554900-02
Chr10	irgsp1_rep	CDS	21788566	21788673	.	-	0	Parent=Os10t0554900-02
Chr10	irgsp1_rep	CDS	21788173	21788280	.	-	0	Parent=Os10t0554900-02
Chr10	irgsp1_rep	three_prime_UTR	21787628	21788172	.	-	.	Parent=Os10t0554900-02
Chr10	irgsp1_rep	mRNA	21798929	21802616	.	+	.	ID=Os10t0555100-01;Name=Os10t0555100-01;Locus_id=Os10g0555100;CGSNL Gene Symbol=GGT;CGSNL Gene Name=GLYCOGENIN GLUCOSYLTRANSFERASE;Oryzabase Gene Symbol Synonym(s)=OsGGT%2C OsPGSIP-C1%2C PGSIP-C1;Oryzabase Gene Name Synonym(s)=glycogenin glucosyltransferase%2C plant glycogenin-like starch initiation protein C1;Note=Similar to DNA Chromosome 4%2C ESSA I CONTIG fragment NO. 6 (Glucosyltransferase like protein).;Transcript_evidence=AK120349 (DDBJ%2C Best hit);ORF_evidence=NP_001148114.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 8 (IPR002495);NIAS_FLcDNA=J013065B08;Oryzabase=14659;Expression=AK120349;TENOR=Os10t0555100-01;KEGG=Os10t0555100-01
Chr10	irgsp1_rep	five_prime_UTR	21798929	21799089	.	+	.	Parent=Os10t0555100-01
Chr10	irgsp1_rep	CDS	21799090	21799412	.	+	0	Parent=Os10t0555100-01
Chr10	irgsp1_rep	CDS	21800243	21800504	.	+	1	Parent=Os10t0555100-01
Chr10	irgsp1_rep	CDS	21801175	21801376	.	+	0	Parent=Os10t0555100-01
Chr10	irgsp1_rep	CDS	21801466	21801613	.	+	2	Parent=Os10t0555100-01
Chr10	irgsp1_rep	CDS	21801718	21802261	.	+	1	Parent=Os10t0555100-01
Chr10	irgsp1_rep	three_prime_UTR	21802262	21802616	.	+	.	Parent=Os10t0555100-01
Chr10	irgsp1_rep	mRNA	21802742	21804315	.	-	.	ID=Os10t0555200-01;Name=Os10t0555200-01;Locus_id=Os10g0555200;Note=Resolvase%2C holliday junction-type%2C YqgF-like domain containing protein.;Transcript_evidence=AK068935 (DDBJ%2C Best hit);ORF_evidence=NP_001149481.1 (RefSeq);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Biological Process: DNA repair (GO:0006281),Biological Process: DNA recombination (GO:0006310),Biological Process: response to DNA damage stimulus (GO:0006974),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Resolvase%2C holliday junction-type%2C YqgF-like (IPR005227),YqgF/RNase H-like domain (IPR006641),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=J023003I12;Oryzabase=22699;Expression=AK068935;TENOR=Os10t0555200-01;KEGG=Os10t0555200-01 (EC:3.1.-.-)
Chr10	irgsp1_rep	five_prime_UTR	21804314	21804315	.	-	.	Parent=Os10t0555200-01
Chr10	irgsp1_rep	CDS	21804011	21804313	.	-	0	Parent=Os10t0555200-01
Chr10	irgsp1_rep	CDS	21803871	21803930	.	-	0	Parent=Os10t0555200-01
Chr10	irgsp1_rep	CDS	21803652	21803764	.	-	0	Parent=Os10t0555200-01
Chr10	irgsp1_rep	CDS	21803296	21803364	.	-	1	Parent=Os10t0555200-01
Chr10	irgsp1_rep	CDS	21803142	21803193	.	-	1	Parent=Os10t0555200-01
Chr10	irgsp1_rep	CDS	21802938	21803054	.	-	0	Parent=Os10t0555200-01
Chr10	irgsp1_rep	three_prime_UTR	21802742	21802937	.	-	.	Parent=Os10t0555200-01
Chr10	irgsp1_rep	mRNA	21809273	21810954	.	-	.	ID=Os10t0555300-01;Name=Os10t0555300-01;Locus_id=Os10g0555300;CGSNL Gene Symbol=DLN239;CGSNL Gene Name=DLN REPRESSOR 239;Oryzabase Gene Symbol Synonym(s)=OsDLN239;Oryzabase Gene Name Synonym(s)=DLN repressor 239%2C DLN motif protein 239;Note=Zinc finger%2C C2H2-like domain containing protein.;Transcript_evidence=AK106924 (DDBJ%2C Best hit);ORF_evidence=B6UD41 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=002-119-B08;Oryzabase=22700;Expression=AK106924;TENOR=Os10t0555300-01;KEGG=Os10t0555300-01
Chr10	irgsp1_rep	five_prime_UTR	21810651	21810954	.	-	.	Parent=Os10t0555300-01
Chr10	irgsp1_rep	CDS	21809571	21810650	.	-	0	Parent=Os10t0555300-01
Chr10	irgsp1_rep	three_prime_UTR	21809273	21809570	.	-	.	Parent=Os10t0555300-01
Chr10	irgsp1_rep	mRNA	21830158	21831694	.	-	.	ID=Os10t0555600-01;Name=Os10t0555600-01;Locus_id=Os10g0555600;CGSNL Gene Symbol=EXPB6;CGSNL Gene Name=BETA-EXPANSIN 6;Oryzabase Gene Symbol Synonym(s)=OsEXPB6%2C osaEXPb1.8%2C EXPb1.8;Oryzabase Gene Name Synonym(s)=Expansin-B6%2C Beta-expansin-6;Note=Beta-expansin precursor.;Transcript_evidence=AK101728 (DDBJ%2C Best hit),AK061498 (DDBJ%2C Best hit),AK104197 (DDBJ%2C Best hit),AK105799 (DDBJ%2C Best hit);ORF_evidence=B7E6G9 (UniProt);GO=Biological Process: sexual reproduction (GO:0019953),Cellular Component: extracellular region (GO:0005576);InterPro=Major pollen allergen Lol pI (IPR005795),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);NIAS_FLcDNA=J033061F13,006-309-D06,006-304-A02,001-203-A09;Oryzabase=9338;TENOR=Os10t0555600-01
Chr10	irgsp1_rep	five_prime_UTR	21831582	21831694	.	-	.	Parent=Os10t0555600-01
Chr10	irgsp1_rep	CDS	21831392	21831581	.	-	0	Parent=Os10t0555600-01
Chr10	irgsp1_rep	CDS	21831178	21831287	.	-	2	Parent=Os10t0555600-01
Chr10	irgsp1_rep	CDS	21830478	21831005	.	-	0	Parent=Os10t0555600-01
Chr10	irgsp1_rep	three_prime_UTR	21830158	21830477	.	-	.	Parent=Os10t0555600-01
Chr10	irgsp1_rep	mRNA	21830469	21831011	.	+	.	ID=Os10t0555651-00;Name=Os10t0555651-00;Locus_id=Os10g0555651;Note=Conserved hypothetical protein.;Transcript_evidence=EU947703 (DDBJ);ORF_evidence=NP_001176265.1 (RefSeq);TENOR=Os10t0555651-00
Chr10	irgsp1_rep	CDS	21830469	21831011	.	+	0	Parent=Os10t0555651-00
Chr10	irgsp1_rep	mRNA	21835933	21837651	.	-	.	ID=Os10t0555700-02;Name=Os10t0555700-02;Locus_id=Os10g0555700;CGSNL Gene Symbol=EXPB2;CGSNL Gene Name=BETA-EXPANSIN 2;Oryzabase Gene Symbol Synonym(s)=OsEXPB2%2C OsaEXPb1.9%2C EXPb1.9;Oryzabase Gene Name Synonym(s)=Expansin-B2%2C Beta-expansin-2;Note=Beta-expansin.;Transcript_evidence=AK061068 (DDBJ%2C Best hit),AK058895 (DDBJ%2C Best hit),AK104128 (DDBJ%2C Best hit);ORF_evidence=O24230 (UniProt);NIAS_FLcDNA=006-206-C01,001-007-F11,006-203-F04;Oryzabase=6139;Expression=AK061068;TENOR=Os10t0555700-02;KEGG=Os10t0555700-02
Chr10	irgsp1_rep	five_prime_UTR	21837586	21837651	.	-	.	Parent=Os10t0555700-02
Chr10	irgsp1_rep	CDS	21837435	21837585	.	-	0	Parent=Os10t0555700-02
Chr10	irgsp1_rep	CDS	21837221	21837330	.	-	2	Parent=Os10t0555700-02
Chr10	irgsp1_rep	CDS	21836340	21836864	.	-	0	Parent=Os10t0555700-02
Chr10	irgsp1_rep	three_prime_UTR	21835933	21836339	.	-	.	Parent=Os10t0555700-02
Chr10	irgsp1_rep	mRNA	21847853	21849722	.	-	.	ID=Os10t0555900-01;Name=Os10t0555900-01;Locus_id=Os10g0555900;CGSNL Gene Symbol=EXPB3;CGSNL Gene Name=BETA-EXPANSIN 3;Oryzabase Gene Symbol Synonym(s)=OsEXPB3%2C osaEXPb1.10%2C EXPb1.10;Oryzabase Gene Name Synonym(s)=Expansin-B3%2C Beta-expansin-3;Note=Similar to Beta-expansin.;Transcript_evidence=AK105318 (DDBJ%2C Best hit);ORF_evidence=B7ER55 (UniProt);GO=Biological Process: sexual reproduction (GO:0019953),Cellular Component: extracellular region (GO:0005576);InterPro=Major pollen allergen Lol pI (IPR005795),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);NIAS_FLcDNA=001-117-F11;Oryzabase=6140;Expression=AK105318;TENOR=Os10t0555900-01;KEGG=Os10t0555900-01
Chr10	irgsp1_rep	five_prime_UTR	21849637	21849722	.	-	.	Parent=Os10t0555900-01
Chr10	irgsp1_rep	CDS	21849614	21849636	.	-	0	Parent=Os10t0555900-01
Chr10	irgsp1_rep	CDS	21849219	21849255	.	-	1	Parent=Os10t0555900-01
Chr10	irgsp1_rep	CDS	21848898	21849082	.	-	0	Parent=Os10t0555900-01
Chr10	irgsp1_rep	CDS	21848225	21848552	.	-	1	Parent=Os10t0555900-01
Chr10	irgsp1_rep	three_prime_UTR	21847853	21848224	.	-	.	Parent=Os10t0555900-01
Chr10	irgsp1_rep	mRNA	21847828	21849722	.	-	.	ID=Os10t0555900-02;Name=Os10t0555900-02;Locus_id=Os10g0555900;CGSNL Gene Symbol=EXPB3;CGSNL Gene Name=BETA-EXPANSIN 3;Oryzabase Gene Symbol Synonym(s)=OsEXPB3%2C osaEXPb1.10%2C EXPb1.10;Oryzabase Gene Name Synonym(s)=Expansin-B3%2C Beta-expansin-3;Note=Beta-expansin precursor.;Transcript_evidence=AK100959 (DDBJ%2C Best hit);ORF_evidence=Q336T5 (UniProt);GO=Biological Process: sexual reproduction (GO:0019953),Cellular Component: extracellular region (GO:0005576);InterPro=Major pollen allergen Lol pI (IPR005795),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);NIAS_FLcDNA=J023140O05;Oryzabase=6140;Expression=AK100959;TENOR=Os10t0555900-02;KEGG=Os10t0555900-02
Chr10	irgsp1_rep	five_prime_UTR	21849616	21849722	.	-	.	Parent=Os10t0555900-02
Chr10	irgsp1_rep	CDS	21849432	21849615	.	-	0	Parent=Os10t0555900-02
Chr10	irgsp1_rep	CDS	21849219	21849328	.	-	2	Parent=Os10t0555900-02
Chr10	irgsp1_rep	CDS	21848898	21849082	.	-	0	Parent=Os10t0555900-02
Chr10	irgsp1_rep	CDS	21848225	21848552	.	-	1	Parent=Os10t0555900-02
Chr10	irgsp1_rep	three_prime_UTR	21847828	21848224	.	-	.	Parent=Os10t0555900-02
Chr10	irgsp1_rep	mRNA	21848234	21848556	.	+	.	ID=Os10t0556000-00;Name=Os10t0556000-00;Locus_id=Os10g0556000;Note=Hypothetical protein.;Transcript_evidence=EU947703 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0556000-00
Chr10	irgsp1_rep	CDS	21848234	21848556	.	+	0	Parent=Os10t0556000-00
Chr10	irgsp1_rep	mRNA	21858853	21861245	.	+	.	ID=Os10t0556100-01;Name=Os10t0556100-01;Locus_id=Os10g0556100;CGSNL Gene Symbol=EXPB4;CGSNL Gene Name=BETA-EXPANSIN 4;Oryzabase Gene Symbol Synonym(s)=OsEXPB4%2C OsaEXPb1.7%2C EXPb1.7;Oryzabase Gene Name Synonym(s)=Expansin-B4%2C Beta-expansin-4;Note=Similar to beta-expansin EXPB4.;Transcript_evidence=AK101357 (DDBJ%2C Best hit);ORF_evidence=Q94LR4 (UniProt);GO=Biological Process: sexual reproduction (GO:0019953),Cellular Component: extracellular region (GO:0005576);InterPro=Major pollen allergen Lol pI (IPR005795),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);NIAS_FLcDNA=J033035B15;Oryzabase=6141;Expression=AK101357;TENOR=Os10t0556100-01;KEGG=Os10t0556100-01
Chr10	irgsp1_rep	five_prime_UTR	21858853	21859152	.	+	.	Parent=Os10t0556100-01
Chr10	irgsp1_rep	CDS	21859153	21859375	.	+	0	Parent=Os10t0556100-01
Chr10	irgsp1_rep	CDS	21859470	21859579	.	+	2	Parent=Os10t0556100-01
Chr10	irgsp1_rep	CDS	21859829	21860013	.	+	0	Parent=Os10t0556100-01
Chr10	irgsp1_rep	CDS	21860592	21860934	.	+	1	Parent=Os10t0556100-01
Chr10	irgsp1_rep	three_prime_UTR	21860935	21861245	.	+	.	Parent=Os10t0556100-01
Chr10	irgsp1_rep	mRNA	21859033	21861243	.	+	.	ID=Os10t0556100-02;Name=Os10t0556100-02;Locus_id=Os10g0556100;CGSNL Gene Symbol=EXPB4;CGSNL Gene Name=BETA-EXPANSIN 4;Oryzabase Gene Symbol Synonym(s)=OsEXPB4%2C OsaEXPb1.7%2C EXPb1.7;Oryzabase Gene Name Synonym(s)=Expansin-B4%2C Beta-expansin-4;Note=Similar to beta-expansin EXPB4.;Transcript_evidence=AK105981 (DDBJ%2C Best hit),AK060096 (DDBJ%2C Best hit),AK103929 (DDBJ%2C Best hit);ORF_evidence=Q94LR4 (UniProt);GO=Biological Process: sexual reproduction (GO:0019953),Cellular Component: extracellular region (GO:0005576);InterPro=Major pollen allergen Lol pI (IPR005795),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);NIAS_FLcDNA=001-205-F12,006-307-G02,001-013-D11;Oryzabase=6141;TENOR=Os10t0556100-02
Chr10	irgsp1_rep	five_prime_UTR	21859033	21859152	.	+	.	Parent=Os10t0556100-02
Chr10	irgsp1_rep	CDS	21859153	21859375	.	+	0	Parent=Os10t0556100-02
Chr10	irgsp1_rep	CDS	21859470	21859579	.	+	2	Parent=Os10t0556100-02
Chr10	irgsp1_rep	CDS	21859829	21860013	.	+	0	Parent=Os10t0556100-02
Chr10	irgsp1_rep	CDS	21860592	21860934	.	+	1	Parent=Os10t0556100-02
Chr10	irgsp1_rep	three_prime_UTR	21860935	21861243	.	+	.	Parent=Os10t0556100-02
Chr10	irgsp1_rep	mRNA	21859377	21861259	.	+	.	ID=Os10t0556100-03;Name=Os10t0556100-03;Locus_id=Os10g0556100;CGSNL Gene Symbol=EXPB4;CGSNL Gene Name=BETA-EXPANSIN 4;Oryzabase Gene Symbol Synonym(s)=OsEXPB4%2C OsaEXPb1.7%2C EXPb1.7;Oryzabase Gene Name Synonym(s)=Expansin-B4%2C Beta-expansin-4;Note=Similar to Expansin-B4.;Transcript_evidence=AK101806 (DDBJ%2C Best hit);ORF_evidence=A3C777 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Expansin/pollen allergen%2C DPBB domain (IPR007112),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);NIAS_FLcDNA=J033066K12;Oryzabase=6141;Expression=AK101806;TENOR=Os10t0556100-03;KEGG=Os10t0556100-03
Chr10	irgsp1_rep	five_prime_UTR	21859377	21859378	.	+	.	Parent=Os10t0556100-03
Chr10	irgsp1_rep	CDS	21859379	21859651	.	+	0	Parent=Os10t0556100-03
Chr10	irgsp1_rep	three_prime_UTR	21859652	21861259	.	+	.	Parent=Os10t0556100-03
Chr10	irgsp1_rep	mRNA	21863032	21867667	.	-	.	ID=Os10t0556200-01;Name=Os10t0556200-01;Locus_id=Os10g0556200;Oryzabase Gene Symbol Synonym(s)=OsbHLH113%2C bHLH113;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 113;Note=Hypothetical conserved gene.;Transcript_evidence=AK287925 (DDBJ%2C Best hit);ORF_evidence=B8BI66 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355);InterPro=Helix-loop-helix DNA-binding (IPR011598),Basic helix-loop-helix leucine zipper transcription factor (IPR024097),Basic helix-loop-helix leucine zipper transcription factor%2C plant (IPR024102);NIAS_FLcDNA=J065218F01;Oryzabase=15393;TENOR=Os10t0556200-01;KEGG=Os10t0556200-01
Chr10	irgsp1_rep	five_prime_UTR	21867524	21867667	.	-	.	Parent=Os10t0556200-01
Chr10	irgsp1_rep	CDS	21866786	21867523	.	-	0	Parent=Os10t0556200-01
Chr10	irgsp1_rep	CDS	21866517	21866633	.	-	0	Parent=Os10t0556200-01
Chr10	irgsp1_rep	CDS	21864491	21864556	.	-	0	Parent=Os10t0556200-01
Chr10	irgsp1_rep	CDS	21863605	21863976	.	-	0	Parent=Os10t0556200-01
Chr10	irgsp1_rep	CDS	21863404	21863508	.	-	0	Parent=Os10t0556200-01
Chr10	irgsp1_rep	three_prime_UTR	21863032	21863403	.	-	.	Parent=Os10t0556200-01
Chr10	irgsp1_rep	mRNA	21873317	21875948	.	+	.	ID=Os10t0556500-01;Name=Os10t0556500-01;Locus_id=Os10g0556500;Note=Hypothetical conserved gene.;Transcript_evidence=AK241512 (DDBJ%2C Best hit);ORF_evidence=NP_001176267.1 (RefSeq);NIAS_FLcDNA=J065168I15;Oryzabase=22706;TENOR=Os10t0556500-01;KEGG=Os10t0556500-01
Chr10	irgsp1_rep	five_prime_UTR	21873317	21873538	.	+	.	Parent=Os10t0556500-01
Chr10	irgsp1_rep	CDS	21873539	21873749	.	+	0	Parent=Os10t0556500-01
Chr10	irgsp1_rep	CDS	21874008	21874015	.	+	2	Parent=Os10t0556500-01
Chr10	irgsp1_rep	three_prime_UTR	21874016	21875948	.	+	.	Parent=Os10t0556500-01
Chr10	irgsp1_rep	mRNA	21884416	21903586	.	-	.	ID=Os10t0556700-01;Name=Os10t0556700-01;Locus_id=Os10g0556700;RAP-DB Gene Symbol Synonym(s)=OsNOT1;Oryzabase Gene Symbol Synonym(s)=OsNOT1%2C NOT1;Oryzabase Gene Name Synonym(s)=NOT1 homolog;Note=CCR4-Not1 complex component%2C mRNA deadenylation;Transcript_evidence=Inferred from literature;ORF_evidence=Q7XC99;InterPro=CCR4-NOT transcription complex subunit 1%2C HEAT repeat (IPR032194),CCR4-NOT transcription complex subunit 1%2C TTP binding domain (IPR032193),CCR4-NOT transcription complex subunit 1%2C CAF1-binding domain (IPR032191),CCR4-Not complex%2C Not1 subunit%2C domain of unknown function DUF3819 (IPR024557),CCR4-Not complex component%2C Not1%2C C-terminal (IPR007196);Manual Curation=October 13%2C 2016;Literature_PMID=27714489;Oryzabase=21536;TENOR=Os10t0556700-00
Chr10	irgsp1_rep	CDS	21903488	21903586	.	-	0	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21902332	21902632	.	-	0	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21902013	21902241	.	-	2	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21901584	21901923	.	-	1	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21901380	21901493	.	-	0	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21901178	21901306	.	-	0	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21900915	21901091	.	-	0	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21900635	21900826	.	-	0	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21899807	21899944	.	-	0	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21899553	21899657	.	-	0	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21899217	21899461	.	-	0	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21898603	21898706	.	-	1	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21897949	21898043	.	-	2	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21897633	21897863	.	-	0	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21897354	21897545	.	-	0	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21897121	21897226	.	-	0	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21896892	21896986	.	-	2	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21896377	21896522	.	-	0	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21896184	21896292	.	-	1	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21895959	21896105	.	-	0	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21895544	21895591	.	-	0	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21895330	21895458	.	-	0	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21894996	21895235	.	-	0	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21894753	21894905	.	-	0	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21894587	21894669	.	-	0	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21894403	21894508	.	-	1	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21894228	21894323	.	-	0	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21893949	21894101	.	-	0	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21893524	21893706	.	-	0	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21893210	21893430	.	-	0	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21893015	21893141	.	-	1	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21892814	21892933	.	-	0	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21892417	21892461	.	-	0	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21892206	21892283	.	-	0	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21891997	21892113	.	-	0	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21891047	21891173	.	-	0	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21890118	21890218	.	-	2	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21889931	21890038	.	-	0	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21889756	21889842	.	-	0	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21888482	21888628	.	-	0	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21888268	21888405	.	-	0	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21887694	21887741	.	-	0	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21887468	21887614	.	-	0	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21887325	21887386	.	-	0	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21886663	21886816	.	-	1	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21886373	21886564	.	-	0	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21886176	21886280	.	-	0	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21885862	21885990	.	-	0	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21885219	21885461	.	-	0	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21885026	21885127	.	-	0	Parent=Os10t0556700-01
Chr10	irgsp1_rep	CDS	21884806	21884943	.	-	0	Parent=Os10t0556700-01
Chr10	irgsp1_rep	three_prime_UTR	21884416	21884805	.	-	.	Parent=Os10t0556700-01
Chr10	irgsp1_rep	mRNA	21908417	21915717	.	+	.	ID=Os10t0556900-01;Name=Os10t0556900-01;Locus_id=Os10g0556900;Note=Conserved hypothetical protein.;Transcript_evidence=AK318544 (DDBJ%2C Best hit);ORF_evidence=NP_001176269.1 (RefSeq);NIAS_FLcDNA=J075110I03;TENOR=Os10t0556900-01;KEGG=Os10t0556900-01
Chr10	irgsp1_rep	five_prime_UTR	21908417	21908507	.	+	.	Parent=Os10t0556900-01
Chr10	irgsp1_rep	five_prime_UTR	21908872	21909171	.	+	.	Parent=Os10t0556900-01
Chr10	irgsp1_rep	CDS	21909172	21909387	.	+	0	Parent=Os10t0556900-01
Chr10	irgsp1_rep	three_prime_UTR	21909388	21910030	.	+	.	Parent=Os10t0556900-01
Chr10	irgsp1_rep	three_prime_UTR	21910163	21910233	.	+	.	Parent=Os10t0556900-01
Chr10	irgsp1_rep	three_prime_UTR	21910566	21910732	.	+	.	Parent=Os10t0556900-01
Chr10	irgsp1_rep	three_prime_UTR	21911122	21911220	.	+	.	Parent=Os10t0556900-01
Chr10	irgsp1_rep	three_prime_UTR	21911388	21911502	.	+	.	Parent=Os10t0556900-01
Chr10	irgsp1_rep	three_prime_UTR	21911577	21911741	.	+	.	Parent=Os10t0556900-01
Chr10	irgsp1_rep	three_prime_UTR	21912110	21912206	.	+	.	Parent=Os10t0556900-01
Chr10	irgsp1_rep	three_prime_UTR	21914904	21915030	.	+	.	Parent=Os10t0556900-01
Chr10	irgsp1_rep	three_prime_UTR	21915470	21915717	.	+	.	Parent=Os10t0556900-01
Chr10	irgsp1_rep	mRNA	21934374	21935202	.	-	.	ID=Os10t0557133-00;Name=Os10t0557133-00;Locus_id=Os10g0557133;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);InterPro=Ribonuclease H1%2C N-terminal (IPR011320);TENOR=Os10t0557133-00
Chr10	irgsp1_rep	five_prime_UTR	21935199	21935202	.	-	.	Parent=Os10t0557133-00
Chr10	irgsp1_rep	CDS	21934374	21935198	.	-	0	Parent=Os10t0557133-00
Chr10	irgsp1_rep	mRNA	21944163	21944875	.	-	.	ID=Os10t0557366-00;Name=Os10t0557366-00;Locus_id=Os10g0557366;Note=Conserved hypothetical protein.;Transcript_evidence=FP100733 (DDBJ);ORF_evidence=A2XC28 (UniProt);TENOR=Os10t0557366-00
Chr10	irgsp1_rep	CDS	21944219	21944875	.	-	0	Parent=Os10t0557366-00
Chr10	irgsp1_rep	three_prime_UTR	21944163	21944218	.	-	.	Parent=Os10t0557366-00
Chr10	irgsp1_rep	mRNA	21943291	21945186	.	+	.	ID=Os10t0557600-01;Name=Os10t0557600-01;Locus_id=Os10g0557600;RAP-DB Gene Symbol Synonym(s)=OsGATA7;RAP-DB Gene Name Synonym(s)=GATA transcription factor 7;CGSNL Gene Symbol=GATA7;CGSNL Gene Name=GATA TRANSCRIPTION FACTOR 7;Oryzabase Gene Symbol Synonym(s)=OsGATA7;Oryzabase Gene Name Synonym(s)=GATA transcription factor 7%2C GATA factor 7;Note=GATA transcription factor%2C Brassinosteroids-mediated growth regulation%2C panicle development and grain shape/number/weight/yield;Transcript_evidence=Inferred from literature;ORF_evidence=Q94LQ6;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Biological Process: positive regulation of transcription%2C DNA-templated (GO:0045893),Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: sequence-specific DNA binding (GO:0043565),Cellular Component: nucleus (GO:0005634);InterPro=Zinc finger%2C NHR/GATA-type (IPR013088),Transcription factor%2C GATA%2C plant (IPR016679),Zinc finger%2C GATA-type (IPR000679);Manual Curation=January 28%2C 2019;Literature_PMID=29345105,29181013;Oryzabase=20492;TENOR=Os10t0557600-00;KEGG=Os10t0557600-00
Chr10	irgsp1_rep	five_prime_UTR	21943291	21943555	.	+	.	Parent=Os10t0557600-01
Chr10	irgsp1_rep	CDS	21943556	21943969	.	+	0	Parent=Os10t0557600-01
Chr10	irgsp1_rep	CDS	21944151	21944900	.	+	0	Parent=Os10t0557600-01
Chr10	irgsp1_rep	three_prime_UTR	21944901	21945186	.	+	.	Parent=Os10t0557600-01
Chr10	irgsp1_rep	mRNA	21950650	21953040	.	-	.	ID=Os10t0557700-01;Name=Os10t0557700-01;Locus_id=Os10g0557700;Note=Conserved hypothetical protein.;Transcript_evidence=AK241699 (DDBJ%2C Best hit);ORF_evidence=NP_001176270.1 (RefSeq);NIAS_FLcDNA=J065196C04;TENOR=Os10t0557700-01;KEGG=Os10t0557700-01
Chr10	irgsp1_rep	five_prime_UTR	21952556	21953040	.	-	.	Parent=Os10t0557700-01
Chr10	irgsp1_rep	CDS	21952342	21952555	.	-	0	Parent=Os10t0557700-01
Chr10	irgsp1_rep	CDS	21950972	21950982	.	-	2	Parent=Os10t0557700-01
Chr10	irgsp1_rep	three_prime_UTR	21950650	21950971	.	-	.	Parent=Os10t0557700-01
Chr10	irgsp1_rep	mRNA	21952440	21953021	.	+	.	ID=Os10t0557750-00;Name=Os10t0557750-00;Locus_id=Os10g0557750;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os10t0557750-00;KEGG=Os10t0557750-00
Chr10	irgsp1_rep	CDS	21952440	21953021	.	+	0	Parent=Os10t0557750-00
Chr10	irgsp1_rep	mRNA	21953519	21955536	.	+	.	ID=Os10t0557800-01;Name=Os10t0557800-01;Locus_id=Os10g0557800;Note=Conserved hypothetical protein.;Transcript_evidence=AK073483 (DDBJ%2C Best hit);ORF_evidence=B9G6Y4 (UniProt);NIAS_FLcDNA=J033042K02;TENOR=Os10t0557800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	21953519	21954992	.	+	.	Parent=Os10t0557800-01
Chr10	irgsp1_rep	CDS	21954993	21955355	.	+	0	Parent=Os10t0557800-01
Chr10	irgsp1_rep	three_prime_UTR	21955356	21955536	.	+	.	Parent=Os10t0557800-01
Chr10	irgsp1_rep	mRNA	21955492	21957095	.	-	.	ID=Os10t0557900-00;Name=Os10t0557900-00;Locus_id=Os10g0557900;Note=Peptidase M10A and M12B%2C matrixin and adamalysin family protein.;Transcript_evidence=CT835768 (DDBJ%2C Best hit);ORF_evidence=Q8LET7 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: metabolic process (GO:0008152),Cellular Component: extracellular matrix (GO:0031012),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: metallopeptidase activity (GO:0008237),Molecular Function: zinc ion binding (GO:0008270);InterPro=Peptidase M10%2C metallopeptidase (IPR001818),Peptidoglycan binding-like (IPR002477),Peptidase%2C metallopeptidase (IPR006026),Peptidase M10A%2C matrix metallopeptidase (IPR021190),Metallopeptidase%2C catalytic domain (IPR024079);TENOR=Os10t0557900-00;KEGG=Os10t0557900-00
Chr10	irgsp1_rep	five_prime_UTR	21956753	21957095	.	-	.	Parent=Os10t0557900-00
Chr10	irgsp1_rep	CDS	21955685	21956752	.	-	0	Parent=Os10t0557900-00
Chr10	irgsp1_rep	three_prime_UTR	21955492	21955684	.	-	.	Parent=Os10t0557900-00
Chr10	irgsp1_rep	mRNA	21962401	21963276	.	-	.	ID=Os10t0558100-00;Name=Os10t0558100-00;Locus_id=Os10g0558100;Note=Similar to Matrixin family protein%2C expressed.;Transcript_evidence=AK362972 (DDBJ);ORF_evidence=Q108Z3 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Cellular Component: extracellular matrix (GO:0031012),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: metallopeptidase activity (GO:0008237),Molecular Function: zinc ion binding (GO:0008270);InterPro=Peptidase M10%2C metallopeptidase (IPR001818),Peptidase%2C metallopeptidase (IPR006026),Peptidase M10A%2C matrix metallopeptidase (IPR021190),Metallopeptidase%2C catalytic domain (IPR024079);TENOR=Os10t0558100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	21962401	21963276	.	-	0	Parent=Os10t0558100-00
Chr10	irgsp1_rep	mRNA	21965419	21966288	.	-	.	ID=Os10t0558125-00;Name=Os10t0558125-00;Locus_id=Os10g0558125;Note=Similar to Matrixin family protein%2C expressed.;Transcript_evidence=AK335065 (DDBJ);ORF_evidence=Q108Z3 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Cellular Component: extracellular matrix (GO:0031012),Molecular Function: metalloendopeptidase activity (GO:0004222),Molecular Function: metallopeptidase activity (GO:0008237),Molecular Function: zinc ion binding (GO:0008270);InterPro=Peptidase M10%2C metallopeptidase (IPR001818),Peptidase%2C metallopeptidase (IPR006026),Peptidase M10A%2C matrix metallopeptidase (IPR021190),Metallopeptidase%2C catalytic domain (IPR024079);TENOR=Os10t0558125-00
Chr10	irgsp1_rep	CDS	21965419	21966288	.	-	0	Parent=Os10t0558125-00
Chr10	irgsp1_rep	mRNA	21968925	21970501	.	-	.	ID=Os10t0558200-00;Name=Os10t0558200-00;Locus_id=Os10g0558200;Note=2OG-Fe(II) oxygenase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XC87 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);TENOR=Os10t0558200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	21970268	21970501	.	-	0	Parent=Os10t0558200-00
Chr10	irgsp1_rep	CDS	21969835	21970082	.	-	0	Parent=Os10t0558200-00
Chr10	irgsp1_rep	CDS	21969313	21969637	.	-	1	Parent=Os10t0558200-00
Chr10	irgsp1_rep	CDS	21968925	21969170	.	-	0	Parent=Os10t0558200-00
Chr10	irgsp1_rep	mRNA	21969310	21970499	.	+	.	ID=Os10t0558301-00;Name=Os10t0558301-00;Locus_id=Os10g0558301;Note=Hypothetical gene.;Transcript_evidence=EU953848 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0558301-00;KEGG=Os10t0558301-00
Chr10	irgsp1_rep	five_prime_UTR	21969310	21969414	.	+	.	Parent=Os10t0558301-00
Chr10	irgsp1_rep	CDS	21969415	21969639	.	+	0	Parent=Os10t0558301-00
Chr10	irgsp1_rep	CDS	21969833	21969838	.	+	0	Parent=Os10t0558301-00
Chr10	irgsp1_rep	three_prime_UTR	21969839	21970130	.	+	.	Parent=Os10t0558301-00
Chr10	irgsp1_rep	three_prime_UTR	21970212	21970499	.	+	.	Parent=Os10t0558301-00
Chr10	irgsp1_rep	mRNA	21979109	21981026	.	-	.	ID=Os10t0558400-00;Name=Os10t0558400-00;Locus_id=Os10g0558400;Note=Similar to Oxidoreductase%2C 2OG-Fe oxygenase family protein.;Transcript_evidence=BT085094 (DDBJ);ORF_evidence=Q7XC87 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);TENOR=Os10t0558400-00;KEGG=Os10t0558400-00
Chr10	irgsp1_rep	CDS	21980685	21981026	.	-	0	Parent=Os10t0558400-00
Chr10	irgsp1_rep	CDS	21980303	21980550	.	-	0	Parent=Os10t0558400-00
Chr10	irgsp1_rep	CDS	21979837	21980170	.	-	1	Parent=Os10t0558400-00
Chr10	irgsp1_rep	CDS	21979109	21979378	.	-	0	Parent=Os10t0558400-00
Chr10	irgsp1_rep	mRNA	21979835	21980947	.	+	.	ID=Os10t0558466-00;Name=Os10t0558466-00;Locus_id=Os10g0558466;Note=Hypothetical protein.;Transcript_evidence=EU953848 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0558466-00
Chr10	irgsp1_rep	five_prime_UTR	21979835	21979836	.	+	.	Parent=Os10t0558466-00
Chr10	irgsp1_rep	CDS	21979837	21980140	.	+	0	Parent=Os10t0558466-00
Chr10	irgsp1_rep	CDS	21980274	21980278	.	+	2	Parent=Os10t0558466-00
Chr10	irgsp1_rep	three_prime_UTR	21980279	21980947	.	+	.	Parent=Os10t0558466-00
Chr10	irgsp1_rep	mRNA	21983939	21986656	.	+	.	ID=Os10t0558600-00;Name=Os10t0558600-00;Locus_id=Os10g0558600;Oryzabase Gene Symbol Synonym(s)=PPR13;Oryzabase Gene Name Synonym(s)=pentatricopeptide repeat motif containing gene 13%2C PPR motif-containing gene 13;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q94LP5 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);Oryzabase=19667;TENOR=Os10t0558600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	21983939	21986656	.	+	0	Parent=Os10t0558600-00
Chr10	irgsp1_rep	mRNA	21983981	21984346	.	-	.	ID=Os10t0558650-00;Name=Os10t0558650-00;Locus_id=Os10g0558650;Note=Non-protein coding transcript.;Transcript_evidence=EU946768 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0558650-00
Chr10	irgsp1_rep	exon	21983981	21984346	.	-	.	Parent=Os10t0558650-00
Chr10	irgsp1_rep	mRNA	21988742	21991288	.	-	.	ID=Os10t0558700-01;Name=Os10t0558700-01;Locus_id=Os10g0558700;CGSNL Gene Symbol=2ODD11;CGSNL Gene Name=2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 11;Oryzabase Gene Symbol Synonym(s)=OsODD11%2C ODD11%2C 2-ODD11%2C Os2-ODD11%2C 2ODD11%2C Os2ODD11%2C M3H%2C OsM3H;Oryzabase Gene Name Synonym(s)=2-oxoglutarate-dependent dioxygenase 11;Note=Similar to Oxidoreductase%2C 2OG-Fe oxygenase family protein%2C expressed.;Transcript_evidence=AK060854 (DDBJ%2C Best hit);ORF_evidence=Q336T3 (UniProt);NIAS_FLcDNA=001-034-F01;Oryzabase=22542;Expression=AK060854;TENOR=Os10t0558700-01;KEGG=Os10t0558700-01
Chr10	irgsp1_rep	five_prime_UTR	21990493	21991288	.	-	.	Parent=Os10t0558700-01
Chr10	irgsp1_rep	CDS	21990238	21990492	.	-	0	Parent=Os10t0558700-01
Chr10	irgsp1_rep	CDS	21989759	21990010	.	-	0	Parent=Os10t0558700-01
Chr10	irgsp1_rep	three_prime_UTR	21989352	21989758	.	-	.	Parent=Os10t0558700-01
Chr10	irgsp1_rep	three_prime_UTR	21988742	21989110	.	-	.	Parent=Os10t0558700-01
Chr10	irgsp1_rep	mRNA	21988641	21990570	.	-	.	ID=Os10t0558700-02;Name=Os10t0558700-02;Locus_id=Os10g0558700;CGSNL Gene Symbol=2ODD11;CGSNL Gene Name=2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 11;Oryzabase Gene Symbol Synonym(s)=OsODD11%2C ODD11%2C 2-ODD11%2C Os2-ODD11%2C 2ODD11%2C Os2ODD11%2C M3H%2C OsM3H;Oryzabase Gene Name Synonym(s)=2-oxoglutarate-dependent dioxygenase 11;Note=2OG-Fe(II) oxygenase domain containing protein.;Transcript_evidence=AK067086 (DDBJ%2C Best hit);ORF_evidence=Q336T3 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=J013094J23;Oryzabase=22542;Expression=AK067086;TENOR=Os10t0558700-02;KEGG=Os10t0558700-02
Chr10	irgsp1_rep	five_prime_UTR	21990493	21990570	.	-	.	Parent=Os10t0558700-02
Chr10	irgsp1_rep	CDS	21990238	21990492	.	-	0	Parent=Os10t0558700-02
Chr10	irgsp1_rep	CDS	21989763	21990010	.	-	0	Parent=Os10t0558700-02
Chr10	irgsp1_rep	CDS	21989352	21989676	.	-	1	Parent=Os10t0558700-02
Chr10	irgsp1_rep	CDS	21988865	21989110	.	-	0	Parent=Os10t0558700-02
Chr10	irgsp1_rep	three_prime_UTR	21988641	21988864	.	-	.	Parent=Os10t0558700-02
Chr10	irgsp1_rep	mRNA	21989207	21990566	.	-	.	ID=Os10t0558700-03;Name=Os10t0558700-03;Locus_id=Os10g0558700;CGSNL Gene Symbol=2ODD11;CGSNL Gene Name=2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 11;Oryzabase Gene Symbol Synonym(s)=OsODD11%2C ODD11%2C 2-ODD11%2C Os2-ODD11%2C 2ODD11%2C Os2ODD11%2C M3H%2C OsM3H;Oryzabase Gene Name Synonym(s)=2-oxoglutarate-dependent dioxygenase 11;Note=Similar to Oxidoreductase%2C 2OG-Fe oxygenase family protein%2C expressed.;Transcript_evidence=AK099678 (DDBJ%2C Best hit);ORF_evidence=Q336T3 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=J013070M10;Oryzabase=22542;Expression=AK099678;TENOR=Os10t0558700-03;KEGG=Os10t0558700-03
Chr10	irgsp1_rep	five_prime_UTR	21990493	21990566	.	-	.	Parent=Os10t0558700-03
Chr10	irgsp1_rep	CDS	21990238	21990492	.	-	0	Parent=Os10t0558700-03
Chr10	irgsp1_rep	CDS	21989763	21990010	.	-	0	Parent=Os10t0558700-03
Chr10	irgsp1_rep	CDS	21989292	21989676	.	-	1	Parent=Os10t0558700-03
Chr10	irgsp1_rep	three_prime_UTR	21989207	21989291	.	-	.	Parent=Os10t0558700-03
Chr10	irgsp1_rep	mRNA	21989349	21990589	.	+	.	ID=Os10t0558725-00;Name=Os10t0558725-00;Locus_id=Os10g0558725;Note=Hypothetical protein.;Transcript_evidence=EU953848 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0558725-00
Chr10	irgsp1_rep	five_prime_UTR	21989349	21989646	.	+	.	Parent=Os10t0558725-00
Chr10	irgsp1_rep	five_prime_UTR	21989738	21989957	.	+	.	Parent=Os10t0558725-00
Chr10	irgsp1_rep	CDS	21989958	21990015	.	+	0	Parent=Os10t0558725-00
Chr10	irgsp1_rep	CDS	21990137	21990294	.	+	2	Parent=Os10t0558725-00
Chr10	irgsp1_rep	three_prime_UTR	21990295	21990589	.	+	.	Parent=Os10t0558725-00
Chr10	irgsp1_rep	mRNA	21992040	21993690	.	-	.	ID=Os10t0558750-01;Name=Os10t0558750-01;Locus_id=Os10g0558750;Note=Similar to Oxidoreductase%2C 2OG-Fe oxygenase family protein%2C expressed.;Transcript_evidence=AK066303 (DDBJ%2C Best hit);ORF_evidence=Q336T1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=J013060G22;Expression=AK066303;TENOR=Os10t0558750-01;KEGG=Os10t0558750-01
Chr10	irgsp1_rep	five_prime_UTR	21993249	21993690	.	-	.	Parent=Os10t0558750-01
Chr10	irgsp1_rep	CDS	21993000	21993248	.	-	0	Parent=Os10t0558750-01
Chr10	irgsp1_rep	CDS	21992528	21992775	.	-	0	Parent=Os10t0558750-01
Chr10	irgsp1_rep	CDS	21992106	21992448	.	-	1	Parent=Os10t0558750-01
Chr10	irgsp1_rep	three_prime_UTR	21992040	21992105	.	-	.	Parent=Os10t0558750-01
Chr10	irgsp1_rep	mRNA	21992120	21993255	.	+	.	ID=Os10t0558801-00;Name=Os10t0558801-00;Locus_id=Os10g0558801;Note=Non-protein coding transcript.;Transcript_evidence=EU953848 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0558801-00
Chr10	irgsp1_rep	exon	21992120	21992404	.	+	.	Parent=Os10t0558801-00
Chr10	irgsp1_rep	exon	21992479	21992848	.	+	.	Parent=Os10t0558801-00
Chr10	irgsp1_rep	exon	21992983	21993255	.	+	.	Parent=Os10t0558801-00
Chr10	irgsp1_rep	mRNA	21994497	21995273	.	-	.	ID=Os10t0558850-00;Name=Os10t0558850-00;Locus_id=Os10g0558850;Note=Hypothetical protein.;Transcript_evidence=tplb0043f10 (Wheat FLcDNA);ORF_evidence=longestORF;Oryzabase=22701;TENOR=Os10t0558850-00
Chr10	irgsp1_rep	five_prime_UTR	21995142	21995273	.	-	.	Parent=Os10t0558850-00
Chr10	irgsp1_rep	CDS	21994497	21995141	.	-	0	Parent=Os10t0558850-00
Chr10	irgsp1_rep	mRNA	21995563	21997584	.	-	.	ID=Os10t0558900-01;Name=Os10t0558900-01;Locus_id=Os10g0558900;RAP-DB Gene Symbol Synonym(s)=RL14;RAP-DB Gene Name Synonym(s)=ROLLING LEAF 14%2C Rolling-leaf14;CGSNL Gene Symbol=RL14;CGSNL Gene Name=ROLLING LEAF 14;Oryzabase Gene Symbol Synonym(s)=2-ODD24%2C Os2-ODD24%2C 2ODD24%2C Os2ODD24;Oryzabase Gene Name Synonym(s)=Rolling-leaf14%2C Rolling-leaf 14%2C Rolling leaf 14%2C 2-oxoglutarate-dependent dioxygenase 24;Note=2OG-Fe (II) oxygenase family protein%2C Regulation of the secondary cell wall formation in leaves%2C Modulation of leaf rolling;Transcript_evidence=AK068525;ORF_evidence=A0A0P0XX70;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Isopenicillin N synthase-like (IPR027443),Non-haem dioxygenase N-terminal domain (IPR026992),Oxoglutarate/iron-dependent dioxygenase (IPR005123);NIAS_FLcDNA=J013156L02;Manual Curation=April 27%2C 2017;Literature_PMID=22329407;Oryzabase=21539;TENOR=Os10t0558900-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=cytoplasm (GO:0005737)
Chr10	irgsp1_rep	five_prime_UTR	21997522	21997584	.	-	.	Parent=Os10t0558900-01
Chr10	irgsp1_rep	CDS	21997256	21997521	.	-	0	Parent=Os10t0558900-01
Chr10	irgsp1_rep	CDS	21996815	21997139	.	-	1	Parent=Os10t0558900-01
Chr10	irgsp1_rep	CDS	21995877	21996122	.	-	0	Parent=Os10t0558900-01
Chr10	irgsp1_rep	three_prime_UTR	21995563	21995876	.	-	.	Parent=Os10t0558900-01
Chr10	irgsp1_rep	mRNA	21996812	21998757	.	+	.	ID=Os10t0559050-00;Name=Os10t0559050-00;Locus_id=Os10g0559050;Note=Non-protein coding transcript.;Transcript_evidence=EU953848 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0559050-00
Chr10	irgsp1_rep	exon	21996812	21997109	.	+	.	Parent=Os10t0559050-00
Chr10	irgsp1_rep	exon	21997221	21997508	.	+	.	Parent=Os10t0559050-00
Chr10	irgsp1_rep	exon	21998413	21998757	.	+	.	Parent=Os10t0559050-00
Chr10	irgsp1_rep	mRNA	22012573	22014287	.	-	.	ID=Os10t0559200-01;Name=Os10t0559200-01;Locus_id=Os10g0559200;Note=Similar to Oxidoreductase%2C 2OG-Fe oxygenase family protein%2C expressed.;Transcript_evidence=AK066405 (DDBJ%2C Best hit);ORF_evidence=Q336T1 (UniProt);NIAS_FLcDNA=J013063G04;Expression=AK066405;TENOR=Os10t0559200-01;KEGG=Os10t0559200-01
Chr10	irgsp1_rep	five_prime_UTR	22014278	22014287	.	-	.	Parent=Os10t0559200-01
Chr10	irgsp1_rep	CDS	22014023	22014277	.	-	0	Parent=Os10t0559200-01
Chr10	irgsp1_rep	CDS	22013503	22013749	.	-	0	Parent=Os10t0559200-01
Chr10	irgsp1_rep	CDS	22013322	22013422	.	-	2	Parent=Os10t0559200-01
Chr10	irgsp1_rep	three_prime_UTR	22013097	22013321	.	-	.	Parent=Os10t0559200-01
Chr10	irgsp1_rep	three_prime_UTR	22012573	22012946	.	-	.	Parent=Os10t0559200-01
Chr10	irgsp1_rep	mRNA	22013124	22017335	.	+	.	ID=Os10t0559300-01;Name=Os10t0559300-01;Locus_id=Os10g0559300;Note=Hypothetical protein.;Transcript_evidence=AK063546 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-117-D03;Expression=AK063546;TENOR=Os10t0559300-01;KEGG=Os10t0559300-01
Chr10	irgsp1_rep	five_prime_UTR	22013124	22013780	.	+	.	Parent=Os10t0559300-01
Chr10	irgsp1_rep	five_prime_UTR	22016264	22016271	.	+	.	Parent=Os10t0559300-01
Chr10	irgsp1_rep	CDS	22016272	22016631	.	+	0	Parent=Os10t0559300-01
Chr10	irgsp1_rep	three_prime_UTR	22016632	22017335	.	+	.	Parent=Os10t0559300-01
Chr10	irgsp1_rep	mRNA	22015039	22019101	.	-	.	ID=Os10t0559400-01;Name=Os10t0559400-01;Locus_id=Os10g0559400;Note=Similar to cDNA clone:J023138C05%2C full insert sequence.;Transcript_evidence=AK064149 (DDBJ%2C Best hit);ORF_evidence=Q7XC75 (UniProt);NIAS_FLcDNA=002-103-D01;TENOR=Os10t0559400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	22018871	22019101	.	-	.	Parent=Os10t0559400-01
Chr10	irgsp1_rep	five_prime_UTR	22018259	22018321	.	-	.	Parent=Os10t0559400-01
Chr10	irgsp1_rep	CDS	22018227	22018258	.	-	0	Parent=Os10t0559400-01
Chr10	irgsp1_rep	CDS	22017735	22017990	.	-	1	Parent=Os10t0559400-01
Chr10	irgsp1_rep	three_prime_UTR	22016974	22017734	.	-	.	Parent=Os10t0559400-01
Chr10	irgsp1_rep	three_prime_UTR	22016765	22016874	.	-	.	Parent=Os10t0559400-01
Chr10	irgsp1_rep	three_prime_UTR	22016332	22016577	.	-	.	Parent=Os10t0559400-01
Chr10	irgsp1_rep	three_prime_UTR	22015733	22016055	.	-	.	Parent=Os10t0559400-01
Chr10	irgsp1_rep	three_prime_UTR	22015039	22015462	.	-	.	Parent=Os10t0559400-01
Chr10	irgsp1_rep	mRNA	22014949	22019061	.	-	.	ID=Os10t0559400-02;Name=Os10t0559400-02;Locus_id=Os10g0559400;Note=Similar to cDNA clone:J023138C05%2C full insert sequence.;Transcript_evidence=AK065705 (DDBJ%2C Best hit);ORF_evidence=Q7XC75 (UniProt);NIAS_FLcDNA=J013035F20;Expression=AK065705;TENOR=Os10t0559400-02;KEGG=Os10t0559400-02
Chr10	irgsp1_rep	five_prime_UTR	22018871	22019061	.	-	.	Parent=Os10t0559400-02
Chr10	irgsp1_rep	five_prime_UTR	22018259	22018321	.	-	.	Parent=Os10t0559400-02
Chr10	irgsp1_rep	CDS	22018227	22018258	.	-	0	Parent=Os10t0559400-02
Chr10	irgsp1_rep	CDS	22017735	22017990	.	-	1	Parent=Os10t0559400-02
Chr10	irgsp1_rep	three_prime_UTR	22016765	22017734	.	-	.	Parent=Os10t0559400-02
Chr10	irgsp1_rep	three_prime_UTR	22016332	22016577	.	-	.	Parent=Os10t0559400-02
Chr10	irgsp1_rep	three_prime_UTR	22015733	22016140	.	-	.	Parent=Os10t0559400-02
Chr10	irgsp1_rep	three_prime_UTR	22014949	22015462	.	-	.	Parent=Os10t0559400-02
Chr10	irgsp1_rep	mRNA	22019204	22023390	.	+	.	ID=Os10t0559450-01;Name=Os10t0559450-01;Locus_id=Os10g0559450;Note=Conserved hypothetical protein.;Transcript_evidence=AK241769 (DDBJ%2C Best hit);ORF_evidence=NP_001176272.1 (RefSeq);NIAS_FLcDNA=J065205G11;TENOR=Os10t0559450-01;KEGG=Os10t0559450-01
Chr10	irgsp1_rep	five_prime_UTR	22019204	22019319	.	+	.	Parent=Os10t0559450-01
Chr10	irgsp1_rep	five_prime_UTR	22022399	22022406	.	+	.	Parent=Os10t0559450-01
Chr10	irgsp1_rep	CDS	22022407	22022748	.	+	0	Parent=Os10t0559450-01
Chr10	irgsp1_rep	three_prime_UTR	22022749	22023390	.	+	.	Parent=Os10t0559450-01
Chr10	irgsp1_rep	mRNA	22019715	22023118	.	-	.	ID=Os10t0559500-01;Name=Os10t0559500-01;Locus_id=Os10g0559500;Oryzabase Gene Symbol Synonym(s)=FLS%2C 2-ODD17%2C Os2-ODD17%2C 2ODD17%2C Os2ODD17;Oryzabase Gene Name Synonym(s)=flavonol synthase%2C 2-oxoglutarate-dependent dioxygenase 17;Note=2OG-Fe(II) oxygenase domain containing protein.;Transcript_evidence=AK072706 (DDBJ%2C Best hit);ORF_evidence=Q8SB95 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=J023138C05;Oryzabase=16783;Expression=AK072706;TENOR=Os10t0559500-01;KEGG=Os10t0559500-01
Chr10	irgsp1_rep	five_prime_UTR	22023109	22023118	.	-	.	Parent=Os10t0559500-01
Chr10	irgsp1_rep	CDS	22022848	22023108	.	-	0	Parent=Os10t0559500-01
Chr10	irgsp1_rep	CDS	22022468	22022715	.	-	0	Parent=Os10t0559500-01
Chr10	irgsp1_rep	CDS	22021602	22021929	.	-	1	Parent=Os10t0559500-01
Chr10	irgsp1_rep	CDS	22021112	22021357	.	-	0	Parent=Os10t0559500-01
Chr10	irgsp1_rep	three_prime_UTR	22019715	22021111	.	-	.	Parent=Os10t0559500-01
Chr10	irgsp1_rep	mRNA	22020810	22022939	.	-	.	ID=Os10t0559500-02;Name=Os10t0559500-02;Locus_id=Os10g0559500;Oryzabase Gene Symbol Synonym(s)=FLS%2C 2-ODD17%2C Os2-ODD17%2C 2ODD17%2C Os2ODD17;Oryzabase Gene Name Synonym(s)=flavonol synthase%2C 2-oxoglutarate-dependent dioxygenase 17;Note=2OG-Fe(II) oxygenase domain containing protein.;Transcript_evidence=AK108419 (DDBJ%2C Best hit);ORF_evidence=Q7XC75 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=002-142-H11;Oryzabase=16783;Expression=AK108419;TENOR=Os10t0559500-02;KEGG=Os10t0559500-02
Chr10	irgsp1_rep	five_prime_UTR	22022938	22022939	.	-	.	Parent=Os10t0559500-02
Chr10	irgsp1_rep	CDS	22022848	22022937	.	-	0	Parent=Os10t0559500-02
Chr10	irgsp1_rep	CDS	22022468	22022715	.	-	0	Parent=Os10t0559500-02
Chr10	irgsp1_rep	CDS	22021602	22021929	.	-	1	Parent=Os10t0559500-02
Chr10	irgsp1_rep	CDS	22021112	22021357	.	-	0	Parent=Os10t0559500-02
Chr10	irgsp1_rep	three_prime_UTR	22020810	22021111	.	-	.	Parent=Os10t0559500-02
Chr10	irgsp1_rep	mRNA	22020267	22020980	.	+	.	ID=Os10t0559550-00;Name=Os10t0559550-00;Locus_id=Os10g0559550;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G6Z3 (UniProt);TENOR=Os10t0559550-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	22020267	22020980	.	+	0	Parent=Os10t0559550-00
Chr10	irgsp1_rep	mRNA	22024205	22028766	.	-	.	ID=Os10t0559600-01;Name=Os10t0559600-01;Locus_id=Os10g0559600;Note=Agenet domain containing protein.;Transcript_evidence=AK066219 (DDBJ%2C Best hit);ORF_evidence=Q108Y7 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=Agenet (IPR008395),Tudor-like%2C plant (IPR014002);NIAS_FLcDNA=J013052O05;Expression=AK066219;TENOR=Os10t0559600-01;KEGG=Os10t0559600-01
Chr10	irgsp1_rep	five_prime_UTR	22028765	22028766	.	-	.	Parent=Os10t0559600-01
Chr10	irgsp1_rep	CDS	22028662	22028764	.	-	0	Parent=Os10t0559600-01
Chr10	irgsp1_rep	CDS	22028233	22028413	.	-	2	Parent=Os10t0559600-01
Chr10	irgsp1_rep	CDS	22027585	22027652	.	-	1	Parent=Os10t0559600-01
Chr10	irgsp1_rep	CDS	22027060	22027169	.	-	2	Parent=Os10t0559600-01
Chr10	irgsp1_rep	CDS	22026104	22026958	.	-	0	Parent=Os10t0559600-01
Chr10	irgsp1_rep	CDS	22024669	22024759	.	-	0	Parent=Os10t0559600-01
Chr10	irgsp1_rep	CDS	22024562	22024578	.	-	2	Parent=Os10t0559600-01
Chr10	irgsp1_rep	three_prime_UTR	22024205	22024561	.	-	.	Parent=Os10t0559600-01
Chr10	irgsp1_rep	mRNA	22024294	22030704	.	+	.	ID=Os10t0559650-00;Name=Os10t0559650-00;Locus_id=Os10g0559650;Note=Hypothetical protein.;Transcript_evidence=tplb0029f23 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0559650-00
Chr10	irgsp1_rep	five_prime_UTR	22024294	22024570	.	+	.	Parent=Os10t0559650-00
Chr10	irgsp1_rep	five_prime_UTR	22024677	22024761	.	+	.	Parent=Os10t0559650-00
Chr10	irgsp1_rep	five_prime_UTR	22026111	22027165	.	+	.	Parent=Os10t0559650-00
Chr10	irgsp1_rep	five_prime_UTR	22028160	22028423	.	+	.	Parent=Os10t0559650-00
Chr10	irgsp1_rep	five_prime_UTR	22028674	22028752	.	+	.	Parent=Os10t0559650-00
Chr10	irgsp1_rep	five_prime_UTR	22028839	22028952	.	+	.	Parent=Os10t0559650-00
Chr10	irgsp1_rep	five_prime_UTR	22029618	22029856	.	+	.	Parent=Os10t0559650-00
Chr10	irgsp1_rep	CDS	22029857	22030105	.	+	0	Parent=Os10t0559650-00
Chr10	irgsp1_rep	three_prime_UTR	22030106	22030704	.	+	.	Parent=Os10t0559650-00
Chr10	irgsp1_rep	mRNA	22033685	22036252	.	-	.	ID=Os10t0559700-01;Name=Os10t0559700-01;Locus_id=Os10g0559700;Note=Similar to Agenet domain containing protein%2C expressed.;Transcript_evidence=AK070955 (DDBJ%2C Best hit);ORF_evidence=Q7XC74 (UniProt);NIAS_FLcDNA=J023069K23;Expression=AK070955;TENOR=Os10t0559700-01;KEGG=Os10t0559700-01
Chr10	irgsp1_rep	five_prime_UTR	22035935	22036252	.	-	.	Parent=Os10t0559700-01
Chr10	irgsp1_rep	five_prime_UTR	22035053	22035062	.	-	.	Parent=Os10t0559700-01
Chr10	irgsp1_rep	CDS	22033685	22035052	.	-	0	Parent=Os10t0559700-01
Chr10	irgsp1_rep	mRNA	22030634	22036249	.	-	.	ID=Os10t0559700-02;Name=Os10t0559700-02;Locus_id=Os10g0559700;Note=Similar to Agenet domain containing protein%2C expressed.;Transcript_evidence=AK068632 (DDBJ%2C Best hit);ORF_evidence=Q7XC74 (UniProt);NIAS_FLcDNA=J013155M20;TENOR=Os10t0559700-02
Chr10	irgsp1_rep	five_prime_UTR	22035935	22036249	.	-	.	Parent=Os10t0559700-02
Chr10	irgsp1_rep	five_prime_UTR	22035053	22035062	.	-	.	Parent=Os10t0559700-02
Chr10	irgsp1_rep	CDS	22033081	22035052	.	-	0	Parent=Os10t0559700-02
Chr10	irgsp1_rep	CDS	22032771	22032950	.	-	2	Parent=Os10t0559700-02
Chr10	irgsp1_rep	CDS	22032055	22032479	.	-	2	Parent=Os10t0559700-02
Chr10	irgsp1_rep	CDS	22031725	22031944	.	-	0	Parent=Os10t0559700-02
Chr10	irgsp1_rep	CDS	22031566	22031641	.	-	2	Parent=Os10t0559700-02
Chr10	irgsp1_rep	CDS	22031434	22031486	.	-	1	Parent=Os10t0559700-02
Chr10	irgsp1_rep	CDS	22031239	22031349	.	-	2	Parent=Os10t0559700-02
Chr10	irgsp1_rep	CDS	22030634	22031162	.	-	2	Parent=Os10t0559700-02
Chr10	irgsp1_rep	mRNA	22039577	22043537	.	-	.	ID=Os10t0559800-01;Name=Os10t0559800-01;Locus_id=Os10g0559800;Note=Protein of unknown function DUF547 domain containing protein.;Transcript_evidence=AK105615 (DDBJ%2C Best hit);ORF_evidence=B9G6Z5 (UniProt);InterPro=Domain of unknown function DUF547 (IPR006869);NIAS_FLcDNA=001-200-B10;Expression=AK105615;TENOR=Os10t0559800-01;KEGG=Os10t0559800-01
Chr10	irgsp1_rep	five_prime_UTR	22043381	22043537	.	-	.	Parent=Os10t0559800-01
Chr10	irgsp1_rep	CDS	22043205	22043380	.	-	0	Parent=Os10t0559800-01
Chr10	irgsp1_rep	CDS	22042883	22043117	.	-	1	Parent=Os10t0559800-01
Chr10	irgsp1_rep	CDS	22042571	22042687	.	-	0	Parent=Os10t0559800-01
Chr10	irgsp1_rep	CDS	22041831	22042199	.	-	0	Parent=Os10t0559800-01
Chr10	irgsp1_rep	CDS	22041169	22041482	.	-	0	Parent=Os10t0559800-01
Chr10	irgsp1_rep	CDS	22040972	22041071	.	-	1	Parent=Os10t0559800-01
Chr10	irgsp1_rep	CDS	22040813	22040872	.	-	0	Parent=Os10t0559800-01
Chr10	irgsp1_rep	CDS	22040623	22040709	.	-	0	Parent=Os10t0559800-01
Chr10	irgsp1_rep	CDS	22040112	22040252	.	-	0	Parent=Os10t0559800-01
Chr10	irgsp1_rep	CDS	22039666	22040004	.	-	0	Parent=Os10t0559800-01
Chr10	irgsp1_rep	three_prime_UTR	22039577	22039665	.	-	.	Parent=Os10t0559800-01
Chr10	irgsp1_rep	mRNA	22039677	22043607	.	+	.	ID=Os10t0559833-00;Name=Os10t0559833-00;Locus_id=Os10g0559833;Note=Hypothetical protein.;Transcript_evidence=tplb0038j02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0559833-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	22039677	22039990	.	+	.	Parent=Os10t0559833-00
Chr10	irgsp1_rep	five_prime_UTR	22040094	22040871	.	+	.	Parent=Os10t0559833-00
Chr10	irgsp1_rep	five_prime_UTR	22040971	22041067	.	+	.	Parent=Os10t0559833-00
Chr10	irgsp1_rep	five_prime_UTR	22041165	22041482	.	+	.	Parent=Os10t0559833-00
Chr10	irgsp1_rep	five_prime_UTR	22041831	22042197	.	+	.	Parent=Os10t0559833-00
Chr10	irgsp1_rep	five_prime_UTR	22042576	22042582	.	+	.	Parent=Os10t0559833-00
Chr10	irgsp1_rep	CDS	22042583	22042685	.	+	0	Parent=Os10t0559833-00
Chr10	irgsp1_rep	CDS	22042881	22043117	.	+	2	Parent=Os10t0559833-00
Chr10	irgsp1_rep	CDS	22043205	22043386	.	+	2	Parent=Os10t0559833-00
Chr10	irgsp1_rep	three_prime_UTR	22043387	22043607	.	+	.	Parent=Os10t0559833-00
Chr10	irgsp1_rep	mRNA	22046461	22047003	.	-	.	ID=Os10t0559866-00;Name=Os10t0559866-00;Locus_id=Os10g0559866;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os10t0559866-00
Chr10	irgsp1_rep	CDS	22046461	22047003	.	-	0	Parent=Os10t0559866-00
Chr10	irgsp1_rep	mRNA	22046536	22048449	.	+	.	ID=Os10t0559900-01;Name=Os10t0559900-01;Locus_id=Os10g0559900;Note=Ribosomal protein L18/L5 domain containing protein.;Transcript_evidence=AK070091 (DDBJ%2C Best hit);ORF_evidence=NP_849617.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L18/L5 (IPR005484);NIAS_FLcDNA=J023040K18;Expression=AK070091;TENOR=Os10t0559900-01;KEGG=Os10t0559900-01
Chr10	irgsp1_rep	five_prime_UTR	22046536	22046844	.	+	.	Parent=Os10t0559900-01
Chr10	irgsp1_rep	CDS	22046845	22046955	.	+	0	Parent=Os10t0559900-01
Chr10	irgsp1_rep	CDS	22047868	22048320	.	+	0	Parent=Os10t0559900-01
Chr10	irgsp1_rep	three_prime_UTR	22048321	22048449	.	+	.	Parent=Os10t0559900-01
Chr10	irgsp1_rep	mRNA	22055014	22056950	.	+	.	ID=Os10t0560000-01;Name=Os10t0560000-01;Locus_id=Os10g0560000;Note=Protein of unknown function DUF828%2C plant family protein.;Transcript_evidence=AK066334 (DDBJ%2C Best hit);ORF_evidence=Q8SB99 (UniProt);InterPro=Domain of unknown function DUF828 (IPR008546),Pleckstrin-like%2C plant (IPR013666);NIAS_FLcDNA=J013063K07;Expression=AK066334;TENOR=Os10t0560000-01;KEGG=Os10t0560000-01
Chr10	irgsp1_rep	five_prime_UTR	22055014	22055096	.	+	.	Parent=Os10t0560000-01
Chr10	irgsp1_rep	CDS	22055097	22055375	.	+	0	Parent=Os10t0560000-01
Chr10	irgsp1_rep	CDS	22055539	22055917	.	+	0	Parent=Os10t0560000-01
Chr10	irgsp1_rep	CDS	22056003	22056146	.	+	2	Parent=Os10t0560000-01
Chr10	irgsp1_rep	CDS	22056259	22056308	.	+	2	Parent=Os10t0560000-01
Chr10	irgsp1_rep	CDS	22056398	22056455	.	+	0	Parent=Os10t0560000-01
Chr10	irgsp1_rep	CDS	22056557	22056786	.	+	2	Parent=Os10t0560000-01
Chr10	irgsp1_rep	three_prime_UTR	22056787	22056950	.	+	.	Parent=Os10t0560000-01
Chr10	irgsp1_rep	mRNA	22056622	22056950	.	+	.	ID=Os10t0560000-02;Name=Os10t0560000-02;Locus_id=Os10g0560000;Note=Similar to predicted protein.;Transcript_evidence=AK059709 (DDBJ%2C Best hit);ORF_evidence=Q8SB99 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Pleckstrin homology domain (IPR001849),Pleckstrin-like%2C plant (IPR013666);NIAS_FLcDNA=001-032-E11;Expression=AK059709;TENOR=Os10t0560000-02;KEGG=Os10t0560000-02
Chr10	irgsp1_rep	CDS	22056622	22056786	.	+	0	Parent=Os10t0560000-02
Chr10	irgsp1_rep	three_prime_UTR	22056787	22056950	.	+	.	Parent=Os10t0560000-02
Chr10	irgsp1_rep	mRNA	22062365	22065838	.	-	.	ID=Os10t0560200-01;Name=Os10t0560200-01;Locus_id=Os10g0560200;Oryzabase Gene Name Synonym(s)=Protein of unknown function Cys-rich family protein;Note=Protein of unknown function Cys-rich family protein.;Transcript_evidence=AK069913 (DDBJ%2C Best hit);ORF_evidence=B6SGC5 (UniProt);InterPro=Uncharacterised protein family Cys-rich (IPR006461);NIAS_FLcDNA=J023037N12;Oryzabase=22034;Expression=AK069913;TENOR=Os10t0560200-01;KEGG=Os10t0560200-01
Chr10	irgsp1_rep	five_prime_UTR	22065726	22065838	.	-	.	Parent=Os10t0560200-01
Chr10	irgsp1_rep	CDS	22065594	22065725	.	-	0	Parent=Os10t0560200-01
Chr10	irgsp1_rep	CDS	22065347	22065461	.	-	0	Parent=Os10t0560200-01
Chr10	irgsp1_rep	CDS	22063235	22063500	.	-	2	Parent=Os10t0560200-01
Chr10	irgsp1_rep	CDS	22062625	22062819	.	-	0	Parent=Os10t0560200-01
Chr10	irgsp1_rep	three_prime_UTR	22062365	22062624	.	-	.	Parent=Os10t0560200-01
Chr10	irgsp1_rep	mRNA	22069784	22072449	.	-	.	ID=Os10t0560400-01;Name=Os10t0560400-01;Locus_id=Os10g0560400;Oryzabase Gene Symbol Synonym(s)=OsCCT35%2C OsCMF11%2C OsH%2C DLN240%2C OsDLN240;Oryzabase Gene Name Synonym(s)=CCT domain-containing gene 35%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 35%2C CCT domain protein 35%2C CCT MOTIF FAMILY (CMF) gene 11%2C CONSTANS-like gene H%2C DLN repressor 240%2C DLN motif protein 240;Note=Similar to CONSTANS-like protein CO9 (Fragment).;Transcript_evidence=AK109732 (DDBJ%2C Best hit);ORF_evidence=Q8SBA3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=CCT domain (IPR010402);NIAS_FLcDNA=002-146-C03;Oryzabase=19175;Expression=AK109732;TENOR=Os10t0560400-01;KEGG=Os10t0560400-01
Chr10	irgsp1_rep	five_prime_UTR	22072212	22072449	.	-	.	Parent=Os10t0560400-01
Chr10	irgsp1_rep	CDS	22071672	22072211	.	-	0	Parent=Os10t0560400-01
Chr10	irgsp1_rep	CDS	22069910	22070263	.	-	0	Parent=Os10t0560400-01
Chr10	irgsp1_rep	three_prime_UTR	22069784	22069909	.	-	.	Parent=Os10t0560400-01
Chr10	irgsp1_rep	mRNA	22080046	22083302	.	-	.	ID=Os10t0560450-01;Name=Os10t0560450-01;Locus_id=Os10g0560450;CGSNL Gene Symbol=ATG3B;CGSNL Gene Name=AUTOPHAGY ASSOCIATED GENE 3B;Oryzabase Gene Symbol Synonym(s)=OsATG3b%2C Atg3b;Oryzabase Gene Name Synonym(s)=autophagy 3b%2C AUTOPHAGY RELATED3b;Note=Similar to Autophagy-related protein 3.;Transcript_evidence=AK241567 (DDBJ%2C Best hit);ORF_evidence=B9G6Z8 (UniProt);InterPro=Autophagy-related protein 3%2C N-terminal (IPR007134),Autophagy-related protein 3 (IPR007135);NIAS_FLcDNA=J065179D12;Oryzabase=9636;TENOR=Os10t0560450-01;KEGG=Os10t0560450-01
Chr10	irgsp1_rep	five_prime_UTR	22083190	22083302	.	-	.	Parent=Os10t0560450-01
Chr10	irgsp1_rep	CDS	22082862	22083189	.	-	0	Parent=Os10t0560450-01
Chr10	irgsp1_rep	CDS	22082293	22082409	.	-	2	Parent=Os10t0560450-01
Chr10	irgsp1_rep	CDS	22082035	22082204	.	-	2	Parent=Os10t0560450-01
Chr10	irgsp1_rep	CDS	22081849	22081934	.	-	0	Parent=Os10t0560450-01
Chr10	irgsp1_rep	CDS	22081419	22081470	.	-	1	Parent=Os10t0560450-01
Chr10	irgsp1_rep	CDS	22081213	22081338	.	-	0	Parent=Os10t0560450-01
Chr10	irgsp1_rep	three_prime_UTR	22080639	22081212	.	-	.	Parent=Os10t0560450-01
Chr10	irgsp1_rep	three_prime_UTR	22080425	22080535	.	-	.	Parent=Os10t0560450-01
Chr10	irgsp1_rep	three_prime_UTR	22080046	22080263	.	-	.	Parent=Os10t0560450-01
Chr10	irgsp1_rep	mRNA	22080666	22083112	.	+	.	ID=Os10t0560451-00;Name=Os10t0560451-00;Locus_id=Os10g0560451;Note=Hypothetical gene.;Transcript_evidence=EU940960 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0560451-00;KEGG=Os10t0560451-00
Chr10	irgsp1_rep	five_prime_UTR	22080666	22080812	.	+	.	Parent=Os10t0560451-00
Chr10	irgsp1_rep	five_prime_UTR	22081393	22081467	.	+	.	Parent=Os10t0560451-00
Chr10	irgsp1_rep	five_prime_UTR	22081846	22081921	.	+	.	Parent=Os10t0560451-00
Chr10	irgsp1_rep	five_prime_UTR	22082025	22082068	.	+	.	Parent=Os10t0560451-00
Chr10	irgsp1_rep	CDS	22082069	22082204	.	+	0	Parent=Os10t0560451-00
Chr10	irgsp1_rep	CDS	22082293	22082382	.	+	2	Parent=Os10t0560451-00
Chr10	irgsp1_rep	CDS	22082831	22082850	.	+	2	Parent=Os10t0560451-00
Chr10	irgsp1_rep	three_prime_UTR	22082851	22082931	.	+	.	Parent=Os10t0560451-00
Chr10	irgsp1_rep	three_prime_UTR	22083038	22083112	.	+	.	Parent=Os10t0560451-00
Chr10	irgsp1_rep	mRNA	22083719	22084989	.	+	.	ID=Os10t0560500-01;Name=Os10t0560500-01;Locus_id=Os10g0560500;Note=Conserved hypothetical protein.;Transcript_evidence=AK100157 (DDBJ%2C Best hit);ORF_evidence=Q8SBA5 (UniProt);NIAS_FLcDNA=J023019I23;Expression=AK100157;TENOR=Os10t0560500-01;KEGG=Os10t0560500-01
Chr10	irgsp1_rep	five_prime_UTR	22083719	22083720	.	+	.	Parent=Os10t0560500-01
Chr10	irgsp1_rep	CDS	22083721	22083799	.	+	0	Parent=Os10t0560500-01
Chr10	irgsp1_rep	CDS	22084223	22084989	.	+	2	Parent=Os10t0560500-01
Chr10	irgsp1_rep	mRNA	22097270	22099220	.	+	.	ID=Os10t0560600-01;Name=Os10t0560600-01;Locus_id=Os10g0560600;Note=Non-protein coding transcript.;Transcript_evidence=AK064207 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-104-E06;TENOR=Os10t0560600-01
Chr10	irgsp1_rep	exon	22097270	22099220	.	+	.	Parent=Os10t0560600-01
Chr10	irgsp1_rep	mRNA	22099546	22100588	.	-	.	ID=Os10t0560700-00;Name=Os10t0560700-00;Locus_id=Os10g0560700;CGSNL Gene Symbol=ERF36;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 36;Oryzabase Gene Symbol Synonym(s)=OsERF#036%2C OsERF036%2C OsERF36%2C AP2/EREBP#007%2C AP2/EREBP7;Oryzabase Gene Name Synonym(s)=ethylene response factor 36%2C APETALA2/ethylene-responsive element binding protein 7;Note=Conserved hypothetical protein.;Transcript_evidence=CT837759 (DDBJ%2C Best hit);ORF_evidence=NP_001065380.1 (RefSeq);Oryzabase=10554;TENOR=Os10t0560700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	22100506	22100588	.	-	.	Parent=Os10t0560700-00
Chr10	irgsp1_rep	CDS	22100214	22100505	.	-	0	Parent=Os10t0560700-00
Chr10	irgsp1_rep	CDS	22099796	22100109	.	-	2	Parent=Os10t0560700-00
Chr10	irgsp1_rep	three_prime_UTR	22099546	22099795	.	-	.	Parent=Os10t0560700-00
Chr10	irgsp1_rep	mRNA	22105549	22106158	.	-	.	ID=Os10t0560850-00;Name=Os10t0560850-00;Locus_id=Os10g0560850;Note=Hypothetical gene.;Transcript_evidence=EU940765 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0560850-00
Chr10	irgsp1_rep	five_prime_UTR	22106035	22106158	.	-	.	Parent=Os10t0560850-00
Chr10	irgsp1_rep	five_prime_UTR	22105844	22105890	.	-	.	Parent=Os10t0560850-00
Chr10	irgsp1_rep	CDS	22105549	22105843	.	-	0	Parent=Os10t0560850-00
Chr10	irgsp1_rep	mRNA	22105370	22109115	.	+	.	ID=Os10t0560900-01;Name=Os10t0560900-01;Locus_id=Os10g0560900;Note=Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 domain containing protein.;Transcript_evidence=AK071526 (DDBJ%2C Best hit);ORF_evidence=B6TFA9 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferase%2C class I/classII (IPR004839),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J023099J24;Expression=AK071526;TENOR=Os10t0560900-01;KEGG=Os10t0560900-01 (EC:2.3.1.47)
Chr10	irgsp1_rep	five_prime_UTR	22105370	22105612	.	+	.	Parent=Os10t0560900-01
Chr10	irgsp1_rep	CDS	22105613	22105808	.	+	0	Parent=Os10t0560900-01
Chr10	irgsp1_rep	CDS	22106043	22106155	.	+	2	Parent=Os10t0560900-01
Chr10	irgsp1_rep	CDS	22106347	22106454	.	+	0	Parent=Os10t0560900-01
Chr10	irgsp1_rep	CDS	22106546	22106784	.	+	0	Parent=Os10t0560900-01
Chr10	irgsp1_rep	CDS	22106880	22106919	.	+	1	Parent=Os10t0560900-01
Chr10	irgsp1_rep	CDS	22107025	22107114	.	+	0	Parent=Os10t0560900-01
Chr10	irgsp1_rep	CDS	22107196	22107329	.	+	0	Parent=Os10t0560900-01
Chr10	irgsp1_rep	CDS	22107853	22107941	.	+	1	Parent=Os10t0560900-01
Chr10	irgsp1_rep	CDS	22108180	22108330	.	+	2	Parent=Os10t0560900-01
Chr10	irgsp1_rep	CDS	22108409	22108477	.	+	1	Parent=Os10t0560900-01
Chr10	irgsp1_rep	CDS	22108795	22108918	.	+	1	Parent=Os10t0560900-01
Chr10	irgsp1_rep	three_prime_UTR	22108919	22109115	.	+	.	Parent=Os10t0560900-01
Chr10	irgsp1_rep	mRNA	22112609	22113941	.	-	.	ID=Os10t0561000-00;Name=Os10t0561000-00;Locus_id=Os10g0561000;Oryzabase Gene Symbol Synonym(s)=OsEnS-140;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 140;Note=Hypothetical conserved gene.;Transcript_evidence=BT064708 (DDBJ);ORF_evidence=Q9AUT7 (UniProt);Oryzabase=18427;TENOR=Os10t0561000-00;KEGG=Os10t0561000-00
Chr10	irgsp1_rep	CDS	22113150	22113941	.	-	0	Parent=Os10t0561000-00
Chr10	irgsp1_rep	CDS	22112898	22112998	.	-	0	Parent=Os10t0561000-00
Chr10	irgsp1_rep	CDS	22112609	22112804	.	-	1	Parent=Os10t0561000-00
Chr10	irgsp1_rep	mRNA	22117136	22120221	.	+	.	ID=Os10t0561100-01;Name=Os10t0561100-01;Locus_id=Os10g0561100;Note=Similar to Quinone oxidoreductase.;Transcript_evidence=AK110882 (DDBJ%2C Best hit);ORF_evidence=Q10T48 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040),Polyketide synthase%2C enoylreductase (IPR020843);NIAS_FLcDNA=002-172-G10;Expression=AK110882;TENOR=Os10t0561100-01;KEGG=Os10t0561100-01 (EC:1.6.5.5)
Chr10	irgsp1_rep	five_prime_UTR	22117136	22117669	.	+	.	Parent=Os10t0561100-01
Chr10	irgsp1_rep	CDS	22117670	22117714	.	+	0	Parent=Os10t0561100-01
Chr10	irgsp1_rep	CDS	22117832	22117970	.	+	0	Parent=Os10t0561100-01
Chr10	irgsp1_rep	CDS	22118785	22119011	.	+	2	Parent=Os10t0561100-01
Chr10	irgsp1_rep	CDS	22119157	22119414	.	+	0	Parent=Os10t0561100-01
Chr10	irgsp1_rep	CDS	22119593	22119919	.	+	0	Parent=Os10t0561100-01
Chr10	irgsp1_rep	three_prime_UTR	22119920	22120221	.	+	.	Parent=Os10t0561100-01
Chr10	irgsp1_rep	mRNA	22121800	22123835	.	-	.	ID=Os10t0561200-01;Name=Os10t0561200-01;Locus_id=Os10g0561200;Note=Similar to CigA protein.;Transcript_evidence=AK066634 (DDBJ%2C Best hit);ORF_evidence=Q9AUT5 (UniProt);NIAS_FLcDNA=J013073E24;Expression=AK066634;TENOR=Os10t0561200-01;KEGG=Os10t0561200-01
Chr10	irgsp1_rep	five_prime_UTR	22123835	22123835	.	-	.	Parent=Os10t0561200-01
Chr10	irgsp1_rep	CDS	22123338	22123834	.	-	0	Parent=Os10t0561200-01
Chr10	irgsp1_rep	CDS	22122089	22123157	.	-	1	Parent=Os10t0561200-01
Chr10	irgsp1_rep	three_prime_UTR	22121800	22122088	.	-	.	Parent=Os10t0561200-01
Chr10	irgsp1_rep	mRNA	22121974	22123796	.	+	.	ID=Os10t0561250-00;Name=Os10t0561250-00;Locus_id=Os10g0561250;Note=Hypothetical protein.;Transcript_evidence=tplb0041o18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0561250-00
Chr10	irgsp1_rep	five_prime_UTR	22121974	22123055	.	+	.	Parent=Os10t0561250-00
Chr10	irgsp1_rep	CDS	22123056	22123154	.	+	0	Parent=Os10t0561250-00
Chr10	irgsp1_rep	CDS	22123335	22123664	.	+	0	Parent=Os10t0561250-00
Chr10	irgsp1_rep	three_prime_UTR	22123665	22123796	.	+	.	Parent=Os10t0561250-00
Chr10	irgsp1_rep	mRNA	22124277	22127759	.	+	.	ID=Os10t0561300-01;Name=Os10t0561300-01;Locus_id=Os10g0561300;Note=Similar to Monosaccharid transporter.;Transcript_evidence=AK068343 (DDBJ%2C Best hit);ORF_evidence=NP_001149551.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J013148F21;Expression=AK068343;TENOR=Os10t0561300-01;KEGG=Os10t0561300-01
Chr10	irgsp1_rep	five_prime_UTR	22124277	22124449	.	+	.	Parent=Os10t0561300-01
Chr10	irgsp1_rep	CDS	22124450	22124600	.	+	0	Parent=Os10t0561300-01
Chr10	irgsp1_rep	CDS	22125141	22125460	.	+	2	Parent=Os10t0561300-01
Chr10	irgsp1_rep	CDS	22126478	22127563	.	+	0	Parent=Os10t0561300-01
Chr10	irgsp1_rep	three_prime_UTR	22127564	22127759	.	+	.	Parent=Os10t0561300-01
Chr10	irgsp1_rep	mRNA	22128463	22136769	.	-	.	ID=Os10t0561400-01;Name=Os10t0561400-01;Locus_id=Os10g0561400;CGSNL Gene Symbol=MYBS3;CGSNL Gene Name=TRANSCRIPTION FACTOR MYBS3;Oryzabase Gene Symbol Synonym(s)=OsMYBS3;Oryzabase Gene Name Synonym(s)=transcription factor MYBS3;Note=Similar to Transcription factor MYBS3.;Transcript_evidence=AK066961 (DDBJ%2C Best hit);ORF_evidence=Q7XC57 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J013093O16;Oryzabase=9972;Expression=AK066961;TENOR=Os10t0561400-01;KEGG=Os10t0561400-01
Chr10	irgsp1_rep	five_prime_UTR	22136709	22136769	.	-	.	Parent=Os10t0561400-01
Chr10	irgsp1_rep	five_prime_UTR	22136470	22136573	.	-	.	Parent=Os10t0561400-01
Chr10	irgsp1_rep	five_prime_UTR	22136108	22136186	.	-	.	Parent=Os10t0561400-01
Chr10	irgsp1_rep	five_prime_UTR	22134926	22135009	.	-	.	Parent=Os10t0561400-01
Chr10	irgsp1_rep	five_prime_UTR	22133663	22133798	.	-	.	Parent=Os10t0561400-01
Chr10	irgsp1_rep	five_prime_UTR	22133489	22133524	.	-	.	Parent=Os10t0561400-01
Chr10	irgsp1_rep	CDS	22133464	22133488	.	-	0	Parent=Os10t0561400-01
Chr10	irgsp1_rep	CDS	22129477	22129685	.	-	2	Parent=Os10t0561400-01
Chr10	irgsp1_rep	CDS	22128727	22129197	.	-	0	Parent=Os10t0561400-01
Chr10	irgsp1_rep	three_prime_UTR	22128463	22128726	.	-	.	Parent=Os10t0561400-01
Chr10	irgsp1_rep	mRNA	22128465	22131627	.	-	.	ID=Os10t0561400-02;Name=Os10t0561400-02;Locus_id=Os10g0561400;RAP-DB Gene Symbol Synonym(s)=MYBS3;RAP-DB Gene Name Synonym(s)=transcription factor MYBS3;CGSNL Gene Symbol=MYBS3;CGSNL Gene Name=TRANSCRIPTION FACTOR MYBS3;Oryzabase Gene Symbol Synonym(s)=OsMYBS3;Oryzabase Gene Name Synonym(s)=transcription factor MYBS3;Note=MYB transcription factor%2C Cold tolerance%2C Mediation of sugar signaling;Transcript_evidence=AK101062;ORF_evidence=Q7XC57;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeobox-like domain superfamily (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930),Myb domain%2C plants (IPR006447);NIAS_FLcDNA=J033022I10;Manual Curation=October 16%2C 2020;Literature_PMID=20130099,12172034;Oryzabase=9972;Expression=AK101062;TENOR=Os10t0561400-02;Subcellular location=nucleus (GO:0005634)
Chr10	irgsp1_rep	five_prime_UTR	22131494	22131627	.	-	.	Parent=Os10t0561400-02
Chr10	irgsp1_rep	CDS	22131217	22131493	.	-	0	Parent=Os10t0561400-02
Chr10	irgsp1_rep	CDS	22129477	22129685	.	-	2	Parent=Os10t0561400-02
Chr10	irgsp1_rep	CDS	22128727	22129197	.	-	0	Parent=Os10t0561400-02
Chr10	irgsp1_rep	three_prime_UTR	22128465	22128726	.	-	.	Parent=Os10t0561400-02
Chr10	irgsp1_rep	mRNA	22128528	22130109	.	-	.	ID=Os10t0561400-03;Name=Os10t0561400-03;Locus_id=Os10g0561400;CGSNL Gene Symbol=MYBS3;CGSNL Gene Name=TRANSCRIPTION FACTOR MYBS3;Oryzabase Gene Symbol Synonym(s)=OsMYBS3;Oryzabase Gene Name Synonym(s)=transcription factor MYBS3;Note=Similar to Myb transcription factor.;Transcript_evidence=AK059716 (DDBJ%2C Best hit);ORF_evidence=Q7XC57 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=001-032-G03;Oryzabase=9972;Expression=AK059716;TENOR=Os10t0561400-03;KEGG=Os10t0561400-03
Chr10	irgsp1_rep	five_prime_UTR	22129714	22130109	.	-	.	Parent=Os10t0561400-03
Chr10	irgsp1_rep	CDS	22129477	22129713	.	-	0	Parent=Os10t0561400-03
Chr10	irgsp1_rep	CDS	22128727	22129197	.	-	0	Parent=Os10t0561400-03
Chr10	irgsp1_rep	three_prime_UTR	22128528	22128726	.	-	.	Parent=Os10t0561400-03
Chr10	irgsp1_rep	mRNA	22136957	22141731	.	+	.	ID=Os10t0561500-01;Name=Os10t0561500-01;Locus_id=Os10g0561500;CGSNL Gene Symbol=RLCK307;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 307;Oryzabase Gene Symbol Synonym(s)=OsPUB49%2C OsRLCK307;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 49%2C U-box protein 49%2C Receptor-like Cytoplasmic Kinase 307;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK099675 (DDBJ%2C Best hit);ORF_evidence=C3SAC7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: response to stress (GO:0006950),Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),U box domain (IPR003613),UspA (IPR006016),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013069G23;Oryzabase=17840;Expression=AK099675;TENOR=Os10t0561500-01;KEGG=Os10t0561500-01
Chr10	irgsp1_rep	five_prime_UTR	22136957	22137052	.	+	.	Parent=Os10t0561500-01
Chr10	irgsp1_rep	five_prime_UTR	22137505	22137555	.	+	.	Parent=Os10t0561500-01
Chr10	irgsp1_rep	CDS	22137556	22137736	.	+	0	Parent=Os10t0561500-01
Chr10	irgsp1_rep	CDS	22137839	22137957	.	+	2	Parent=Os10t0561500-01
Chr10	irgsp1_rep	CDS	22138232	22138353	.	+	0	Parent=Os10t0561500-01
Chr10	irgsp1_rep	CDS	22138432	22138628	.	+	1	Parent=Os10t0561500-01
Chr10	irgsp1_rep	CDS	22138929	22139182	.	+	2	Parent=Os10t0561500-01
Chr10	irgsp1_rep	CDS	22139358	22139459	.	+	0	Parent=Os10t0561500-01
Chr10	irgsp1_rep	CDS	22139555	22139983	.	+	0	Parent=Os10t0561500-01
Chr10	irgsp1_rep	CDS	22140190	22140948	.	+	0	Parent=Os10t0561500-01
Chr10	irgsp1_rep	CDS	22141165	22141350	.	+	0	Parent=Os10t0561500-01
Chr10	irgsp1_rep	three_prime_UTR	22141351	22141731	.	+	.	Parent=Os10t0561500-01
Chr10	irgsp1_rep	mRNA	22150511	22151218	.	+	.	ID=Os10t0561600-01;Name=Os10t0561600-01;Locus_id=Os10g0561600;Note=Hypothetical conserved gene.;Transcript_evidence=AK120930 (DDBJ%2C Best hit);ORF_evidence=B9G704 (UniProt);NIAS_FLcDNA=J023036C21;Expression=AK120930;TENOR=Os10t0561600-01;KEGG=Os10t0561600-01
Chr10	irgsp1_rep	five_prime_UTR	22150511	22150512	.	+	.	Parent=Os10t0561600-01
Chr10	irgsp1_rep	CDS	22150513	22150779	.	+	0	Parent=Os10t0561600-01
Chr10	irgsp1_rep	three_prime_UTR	22150780	22151218	.	+	.	Parent=Os10t0561600-01
Chr10	irgsp1_rep	mRNA	22152670	22154159	.	+	.	ID=Os10t0561800-01;Name=Os10t0561800-01;Locus_id=Os10g0561800;RAP-DB Gene Symbol Synonym(s)=OsHOX1;CGSNL Gene Symbol=HOX1;CGSNL Gene Name=HOMEOBOX GENE 1;Oryzabase Gene Symbol Synonym(s)=Oshox1%2C OsHox1;Oryzabase Gene Name Synonym(s)=rice homeobox gene 1%2C Homeobox-leucine zipper protein HOX1%2C Homeodomain transcription factor HOX1%2C HD-ZIP protein HOX1;Note=Class II homeodomain-leucine zipper (HD-ZIP II) protein%2C HD-ZIP transcription factor%2C Regulation of tiller angle and shoot gravitropism%2C Regulation of the local distribution of auxin;Transcript_evidence=AK065404;ORF_evidence=Q7XC54;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Cellular Component: nucleus (GO:0005634);InterPro=Homeobox-like domain superfamily (IPR009057),HD-ZIP protein%2C N-terminal (IPR006712),Homeobox domain (IPR001356),Leucine zipper%2C homeobox-associated (IPR003106),Homeobox%2C conserved site (IPR017970);NIAS_FLcDNA=J013006I17;Manual Curation=September 11%2C 2020;Literature_PMID=32913047;Oryzabase=3017;Expression=AK065404;TENOR=Os10t0561800-01;KEGG=Os10t0561800-01
Chr10	irgsp1_rep	five_prime_UTR	22152670	22152757	.	+	.	Parent=Os10t0561800-01
Chr10	irgsp1_rep	CDS	22152758	22152956	.	+	0	Parent=Os10t0561800-01
Chr10	irgsp1_rep	CDS	22153045	22153388	.	+	2	Parent=Os10t0561800-01
Chr10	irgsp1_rep	CDS	22153484	22153876	.	+	0	Parent=Os10t0561800-01
Chr10	irgsp1_rep	three_prime_UTR	22153877	22154159	.	+	.	Parent=Os10t0561800-01
Chr10	irgsp1_rep	mRNA	22161170	22165059	.	-	.	ID=Os10t0561900-01;Name=Os10t0561900-01;Locus_id=Os10g0561900;Oryzabase Gene Symbol Synonym(s)=OsPP115;Oryzabase Gene Name Synonym(s)=Protein phosphatase 115;Note=Protein-tyrosine phosphatase%2C dual specificity domain containing protein.;Transcript_evidence=AK101939 (DDBJ%2C Best hit);ORF_evidence=B6T3N5 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Biological Process: dephosphorylation (GO:0016311),Molecular Function: protein tyrosine phosphatase activity (GO:0004725),Molecular Function: protein tyrosine/serine/threonine phosphatase activity (GO:0008138),Molecular Function: phosphatase activity (GO:0016791);InterPro=Dual specificity phosphatase%2C catalytic domain (IPR000340),Protein-tyrosine/Dual-specificity phosphatase (IPR000387),Protein-tyrosine phosphatase%2C active site (IPR016130),Dual specificity phosphatase%2C subgroup%2C catalytic domain (IPR020422);NIAS_FLcDNA=J033074H15;Oryzabase=18656;Expression=AK101939;TENOR=Os10t0561900-01;KEGG=Os10t0561900-01
Chr10	irgsp1_rep	five_prime_UTR	22164748	22165059	.	-	.	Parent=Os10t0561900-01
Chr10	irgsp1_rep	CDS	22164472	22164747	.	-	0	Parent=Os10t0561900-01
Chr10	irgsp1_rep	CDS	22163945	22164067	.	-	0	Parent=Os10t0561900-01
Chr10	irgsp1_rep	CDS	22163091	22163184	.	-	0	Parent=Os10t0561900-01
Chr10	irgsp1_rep	CDS	22162481	22162563	.	-	2	Parent=Os10t0561900-01
Chr10	irgsp1_rep	CDS	22162310	22162399	.	-	0	Parent=Os10t0561900-01
Chr10	irgsp1_rep	CDS	22161397	22161819	.	-	0	Parent=Os10t0561900-01
Chr10	irgsp1_rep	three_prime_UTR	22161170	22161396	.	-	.	Parent=Os10t0561900-01
Chr10	irgsp1_rep	mRNA	22161308	22164988	.	-	.	ID=Os10t0561900-02;Name=Os10t0561900-02;Locus_id=Os10g0561900;Oryzabase Gene Symbol Synonym(s)=OsPP115;Oryzabase Gene Name Synonym(s)=Protein phosphatase 115;Note=Protein-tyrosine phosphatase%2C dual specificity domain containing protein.;Transcript_evidence=AK103006 (DDBJ%2C Best hit);ORF_evidence=B6T3N5 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Biological Process: dephosphorylation (GO:0016311),Molecular Function: protein tyrosine phosphatase activity (GO:0004725),Molecular Function: protein tyrosine/serine/threonine phosphatase activity (GO:0008138),Molecular Function: phosphatase activity (GO:0016791);InterPro=Dual specificity phosphatase%2C catalytic domain (IPR000340),Protein-tyrosine/Dual-specificity phosphatase (IPR000387),Protein-tyrosine phosphatase%2C active site (IPR016130),Dual specificity phosphatase%2C subgroup%2C catalytic domain (IPR020422);NIAS_FLcDNA=J033116I08;Oryzabase=18656;Expression=AK103006;TENOR=Os10t0561900-02;KEGG=Os10t0561900-02
Chr10	irgsp1_rep	five_prime_UTR	22164748	22164988	.	-	.	Parent=Os10t0561900-02
Chr10	irgsp1_rep	CDS	22164472	22164747	.	-	0	Parent=Os10t0561900-02
Chr10	irgsp1_rep	CDS	22163945	22164067	.	-	0	Parent=Os10t0561900-02
Chr10	irgsp1_rep	CDS	22163091	22163184	.	-	0	Parent=Os10t0561900-02
Chr10	irgsp1_rep	CDS	22162481	22162563	.	-	2	Parent=Os10t0561900-02
Chr10	irgsp1_rep	CDS	22162310	22162399	.	-	0	Parent=Os10t0561900-02
Chr10	irgsp1_rep	CDS	22161397	22161819	.	-	0	Parent=Os10t0561900-02
Chr10	irgsp1_rep	three_prime_UTR	22161308	22161396	.	-	.	Parent=Os10t0561900-02
Chr10	irgsp1_rep	mRNA	22161193	22164662	.	-	.	ID=Os10t0561900-03;Name=Os10t0561900-03;Locus_id=Os10g0561900;Oryzabase Gene Symbol Synonym(s)=OsPP115;Oryzabase Gene Name Synonym(s)=Protein phosphatase 115;Note=Similar to Protein-tyrosine phosphatase mitochondrial 1.;Transcript_evidence=AK071105 (DDBJ%2C Best hit);ORF_evidence=B6T3N5 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Biological Process: dephosphorylation (GO:0016311),Molecular Function: protein tyrosine phosphatase activity (GO:0004725),Molecular Function: protein tyrosine/serine/threonine phosphatase activity (GO:0008138),Molecular Function: phosphatase activity (GO:0016791);InterPro=Dual specificity phosphatase%2C catalytic domain (IPR000340),Protein-tyrosine/Dual-specificity phosphatase (IPR000387),Protein-tyrosine phosphatase%2C active site (IPR016130),Dual specificity phosphatase%2C subgroup%2C catalytic domain (IPR020422);NIAS_FLcDNA=J023077B12;Oryzabase=18656;TENOR=Os10t0561900-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	22164607	22164662	.	-	.	Parent=Os10t0561900-03
Chr10	irgsp1_rep	CDS	22164472	22164606	.	-	0	Parent=Os10t0561900-03
Chr10	irgsp1_rep	CDS	22163945	22164067	.	-	0	Parent=Os10t0561900-03
Chr10	irgsp1_rep	CDS	22163091	22163184	.	-	0	Parent=Os10t0561900-03
Chr10	irgsp1_rep	CDS	22162481	22162563	.	-	2	Parent=Os10t0561900-03
Chr10	irgsp1_rep	CDS	22162310	22162399	.	-	0	Parent=Os10t0561900-03
Chr10	irgsp1_rep	CDS	22161397	22161819	.	-	0	Parent=Os10t0561900-03
Chr10	irgsp1_rep	three_prime_UTR	22161193	22161396	.	-	.	Parent=Os10t0561900-03
Chr10	irgsp1_rep	mRNA	22161183	22164069	.	-	.	ID=Os10t0561900-04;Name=Os10t0561900-04;Locus_id=Os10g0561900;Oryzabase Gene Symbol Synonym(s)=OsPP115;Oryzabase Gene Name Synonym(s)=Protein phosphatase 115;Note=Similar to Protein-tyrosine phosphatase mitochondrial 1.;Transcript_evidence=AK060104 (DDBJ%2C Best hit);ORF_evidence=B6T3N5 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Biological Process: dephosphorylation (GO:0016311),Molecular Function: protein tyrosine phosphatase activity (GO:0004725),Molecular Function: protein tyrosine/serine/threonine phosphatase activity (GO:0008138),Molecular Function: phosphatase activity (GO:0016791);InterPro=Dual specificity phosphatase%2C catalytic domain (IPR000340),Protein-tyrosine/Dual-specificity phosphatase (IPR000387),Protein-tyrosine phosphatase%2C active site (IPR016130),Dual specificity phosphatase%2C subgroup%2C catalytic domain (IPR020422);NIAS_FLcDNA=006-308-B05;Oryzabase=18656;Expression=AK060104;TENOR=Os10t0561900-04;KEGG=Os10t0561900-04
Chr10	irgsp1_rep	five_prime_UTR	22164068	22164069	.	-	.	Parent=Os10t0561900-04
Chr10	irgsp1_rep	CDS	22163945	22164067	.	-	0	Parent=Os10t0561900-04
Chr10	irgsp1_rep	CDS	22163091	22163184	.	-	0	Parent=Os10t0561900-04
Chr10	irgsp1_rep	CDS	22162481	22162563	.	-	2	Parent=Os10t0561900-04
Chr10	irgsp1_rep	CDS	22162310	22162399	.	-	0	Parent=Os10t0561900-04
Chr10	irgsp1_rep	CDS	22161397	22161819	.	-	0	Parent=Os10t0561900-04
Chr10	irgsp1_rep	three_prime_UTR	22161183	22161396	.	-	.	Parent=Os10t0561900-04
Chr10	irgsp1_rep	mRNA	22166888	22168691	.	-	.	ID=Os10t0562000-01;Name=Os10t0562000-01;Locus_id=Os10g0562000;Note=Similar to glycoprotein.;Transcript_evidence=AK106294 (DDBJ%2C Best hit);ORF_evidence=NP_001151220.1 (RefSeq);NIAS_FLcDNA=002-101-B09;Expression=AK106294;TENOR=Os10t0562000-01;KEGG=Os10t0562000-01
Chr10	irgsp1_rep	five_prime_UTR	22168617	22168691	.	-	.	Parent=Os10t0562000-01
Chr10	irgsp1_rep	CDS	22167141	22168616	.	-	0	Parent=Os10t0562000-01
Chr10	irgsp1_rep	three_prime_UTR	22166888	22167140	.	-	.	Parent=Os10t0562000-01
Chr10	irgsp1_rep	mRNA	22174848	22176685	.	-	.	ID=Os10t0562100-01;Name=Os10t0562100-01;Locus_id=Os10g0562100;RAP-DB Gene Symbol Synonym(s)=MYBS2%2C OsMYBS2;CGSNL Gene Symbol=MYBS2;CGSNL Gene Name=TRANSCRIPTION FACTOR MYBS2;Oryzabase Gene Symbol Synonym(s)=OsMYBS2;Oryzabase Gene Name Synonym(s)=transcription factor MYBS2;Note=MYB transcription factor%2C Regulation of &alpha%3B-Amylase expression in maintaining sugar homeostatic states;Transcript_evidence=AK121235;ORF_evidence=Q7XC51;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeobox-like domain superfamily (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930),Myb domain%2C plants (IPR006447);NIAS_FLcDNA=J023093N04;Manual Curation=October 10%2C 2019;Literature_PMID=31594849,12172034;Oryzabase=9976;Expression=AK121235;TENOR=Os10t0562100-01;KEGG=Os10t0562100-01;Subcellular location=nucleus (GO:0005634) [in +S medium], cytoplasm (GO:0005737) [in -S medium]
Chr10	irgsp1_rep	five_prime_UTR	22176558	22176685	.	-	.	Parent=Os10t0562100-01
Chr10	irgsp1_rep	CDS	22176266	22176557	.	-	0	Parent=Os10t0562100-01
Chr10	irgsp1_rep	CDS	22175651	22175871	.	-	2	Parent=Os10t0562100-01
Chr10	irgsp1_rep	CDS	22175491	22175565	.	-	0	Parent=Os10t0562100-01
Chr10	irgsp1_rep	CDS	22175309	22175356	.	-	0	Parent=Os10t0562100-01
Chr10	irgsp1_rep	CDS	22175066	22175227	.	-	0	Parent=Os10t0562100-01
Chr10	irgsp1_rep	three_prime_UTR	22174848	22175065	.	-	.	Parent=Os10t0562100-01
Chr10	irgsp1_rep	mRNA	22176132	22176685	.	-	.	ID=Os10t0562100-02;Name=Os10t0562100-02;Locus_id=Os10g0562100;CGSNL Gene Symbol=MYBS2;CGSNL Gene Name=TRANSCRIPTION FACTOR MYBS2;Oryzabase Gene Symbol Synonym(s)=OsMYBS2;Oryzabase Gene Name Synonym(s)=transcription factor MYBS2;Note=Similar to Transcription factor MYBS2.;Transcript_evidence=AK109308 (DDBJ%2C Best hit);ORF_evidence=Q8H1D1 (UniProt);NIAS_FLcDNA=002-188-F01;Oryzabase=9976;Expression=AK109308;TENOR=Os10t0562100-02;KEGG=Os10t0562100-02
Chr10	irgsp1_rep	five_prime_UTR	22176558	22176685	.	-	.	Parent=Os10t0562100-02
Chr10	irgsp1_rep	CDS	22176183	22176557	.	-	0	Parent=Os10t0562100-02
Chr10	irgsp1_rep	three_prime_UTR	22176132	22176182	.	-	.	Parent=Os10t0562100-02
Chr10	irgsp1_rep	mRNA	22180638	22182457	.	+	.	ID=Os10t0562200-00;Name=Os10t0562200-00;Locus_id=Os10g0562200;Oryzabase Gene Symbol Synonym(s)=OsDAD1%3B4%2C DAD1%3B4;Note=Lipase-like protein.;Transcript_evidence=AK360298 (DDBJ);ORF_evidence=NP_001148115.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921);Oryzabase=21179;TENOR=Os10t0562200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	22180638	22182392	.	+	0	Parent=Os10t0562200-00
Chr10	irgsp1_rep	three_prime_UTR	22182393	22182457	.	+	.	Parent=Os10t0562200-00
Chr10	irgsp1_rep	mRNA	22190539	22192740	.	+	.	ID=Os10t0562500-01;Name=Os10t0562500-01;Locus_id=Os10g0562500;Note=Similar to Protein kinase KIPK.;Transcript_evidence=AK064321 (DDBJ%2C Best hit);ORF_evidence=B6SVR7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-107-D10;Expression=AK064321;TENOR=Os10t0562500-01;KEGG=Os10t0562500-01 (EC:2.7.11.-)
Chr10	irgsp1_rep	CDS	22190539	22190631	.	+	0	Parent=Os10t0562500-01
Chr10	irgsp1_rep	CDS	22190719	22190975	.	+	0	Parent=Os10t0562500-01
Chr10	irgsp1_rep	CDS	22191636	22192566	.	+	1	Parent=Os10t0562500-01
Chr10	irgsp1_rep	three_prime_UTR	22192567	22192740	.	+	.	Parent=Os10t0562500-01
Chr10	irgsp1_rep	mRNA	22191629	22192570	.	-	.	ID=Os10t0562550-00;Name=Os10t0562550-00;Locus_id=Os10g0562550;Note=Hypothetical gene.;Transcript_evidence=EU943630 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0562550-00;KEGG=Os10t0562550-00
Chr10	irgsp1_rep	five_prime_UTR	22192353	22192570	.	-	.	Parent=Os10t0562550-00
Chr10	irgsp1_rep	CDS	22191951	22192352	.	-	0	Parent=Os10t0562550-00
Chr10	irgsp1_rep	three_prime_UTR	22191629	22191950	.	-	.	Parent=Os10t0562550-00
Chr10	irgsp1_rep	mRNA	22193129	22194080	.	-	.	ID=Os10t0562600-00;Name=Os10t0562600-00;Locus_id=Os10g0562600;Note=Hypothetical conserved gene.;Transcript_evidence=AK361756 (DDBJ);ORF_evidence=Q9AUS3 (UniProt);TENOR=Os10t0562600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	22193922	22194080	.	-	.	Parent=Os10t0562600-00
Chr10	irgsp1_rep	CDS	22193130	22193921	.	-	0	Parent=Os10t0562600-00
Chr10	irgsp1_rep	three_prime_UTR	22193129	22193129	.	-	.	Parent=Os10t0562600-00
Chr10	irgsp1_rep	mRNA	22198336	22202335	.	-	.	ID=Os10t0562700-01;Name=Os10t0562700-01;Locus_id=Os10g0562700;RAP-DB Gene Symbol Synonym(s)=REL2%2C OsDLT10;RAP-DB Gene Name Synonym(s)=rolled and erect leaf 2%2C Dwarf and Low Tillering 10;CGSNL Gene Symbol=REL2;CGSNL Gene Name=ROLLED AND ERECT LEAF 2;Oryzabase Gene Name Synonym(s)=rolled and erect leaf 2;Note=DUF630 and DUF632 domains containing protein%2C Control of leaf rolling%2C Regulation of tiller number%2C Regulation of axillary bud development;Transcript_evidence=AK243456;ORF_evidence=Q9AQW1;InterPro=Domain of unknown function DUF630 (IPR006868),Domain of unknown function DUF632 (IPR006867);NIAS_FLcDNA=J100070J24;Manual Curation=May 22%2C 2020;Literature_PMID=32563453,27473144;Oryzabase=22361;TENOR=Os10t0562700-01;KEGG=Os10t0562700-01;Subcellular location=cytoplasm (GO:0005737) [dot-like organelle]
Chr10	irgsp1_rep	five_prime_UTR	22202177	22202335	.	-	.	Parent=Os10t0562700-01
Chr10	irgsp1_rep	CDS	22201084	22202176	.	-	0	Parent=Os10t0562700-01
Chr10	irgsp1_rep	CDS	22200753	22200940	.	-	2	Parent=Os10t0562700-01
Chr10	irgsp1_rep	CDS	22199472	22199695	.	-	0	Parent=Os10t0562700-01
Chr10	irgsp1_rep	CDS	22198581	22199379	.	-	1	Parent=Os10t0562700-01
Chr10	irgsp1_rep	three_prime_UTR	22198336	22198580	.	-	.	Parent=Os10t0562700-01
Chr10	irgsp1_rep	mRNA	22213939	22214320	.	+	.	ID=Os10t0562900-01;Name=Os10t0562900-01;Locus_id=Os10g0562900;CGSNL Gene Symbol=ERF96;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 96;Oryzabase Gene Symbol Synonym(s)=DERF12%2C OsDERF12%2C OsERF#096%2C OsERF096%2C OsERF96%2C AP2/EREBP#116%2C AP2/EREBP116%2C OsAP2%2C OsAP2.1%2C OsAP2.2%2C OsERF36;Oryzabase Gene Name Synonym(s)=drought-responsive ethylene response factor 12%2C drought-responsive ERF 12%2C ethylene response factor 96%2C APETALA2/ethylene-responsive element binding protein 116%2C OsAPETALA2;Note=Non-protein coding transcript.;Transcript_evidence=AK107989 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-135-F05;Oryzabase=9698;TENOR=Os10t0562900-01
Chr10	irgsp1_rep	exon	22213939	22214320	.	+	.	Parent=Os10t0562900-01
Chr10	irgsp1_rep	mRNA	22216408	22222252	.	+	.	ID=Os10t0563000-01;Name=Os10t0563000-01;Locus_id=Os10g0563000;Note=Similar to Palmitoyl-protein thioesterase-like.;Transcript_evidence=AK072479 (DDBJ%2C Best hit);ORF_evidence=B4FKB8 (UniProt);GO=Biological Process: protein modification process (GO:0006464),Molecular Function: palmitoyl-(protein) hydrolase activity (GO:0008474);InterPro=Palmitoyl protein thioesterase (IPR002472);NIAS_FLcDNA=J023126M16;Expression=AK072479;TENOR=Os10t0563000-01;KEGG=Os10t0563000-01 (EC:3.1.2.22)
Chr10	irgsp1_rep	five_prime_UTR	22216408	22216516	.	+	.	Parent=Os10t0563000-01
Chr10	irgsp1_rep	CDS	22216517	22216628	.	+	0	Parent=Os10t0563000-01
Chr10	irgsp1_rep	CDS	22216750	22216834	.	+	2	Parent=Os10t0563000-01
Chr10	irgsp1_rep	CDS	22217985	22218036	.	+	1	Parent=Os10t0563000-01
Chr10	irgsp1_rep	CDS	22218132	22218152	.	+	0	Parent=Os10t0563000-01
Chr10	irgsp1_rep	CDS	22218239	22218292	.	+	0	Parent=Os10t0563000-01
Chr10	irgsp1_rep	CDS	22218775	22218825	.	+	0	Parent=Os10t0563000-01
Chr10	irgsp1_rep	CDS	22219020	22219082	.	+	0	Parent=Os10t0563000-01
Chr10	irgsp1_rep	CDS	22220032	22220097	.	+	0	Parent=Os10t0563000-01
Chr10	irgsp1_rep	CDS	22220204	22220242	.	+	0	Parent=Os10t0563000-01
Chr10	irgsp1_rep	CDS	22220928	22221050	.	+	0	Parent=Os10t0563000-01
Chr10	irgsp1_rep	CDS	22221570	22221662	.	+	0	Parent=Os10t0563000-01
Chr10	irgsp1_rep	CDS	22221769	22221954	.	+	0	Parent=Os10t0563000-01
Chr10	irgsp1_rep	three_prime_UTR	22221955	22222252	.	+	.	Parent=Os10t0563000-01
Chr10	irgsp1_rep	mRNA	22227629	22235257	.	-	.	ID=Os10t0563200-01;Name=Os10t0563200-01;Locus_id=Os10g0563200;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK072816 (DDBJ%2C Best hit);ORF_evidence=XP_002881988.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023143J11;Expression=AK072816;TENOR=Os10t0563200-01;KEGG=Os10t0563200-01
Chr10	irgsp1_rep	five_prime_UTR	22235257	22235257	.	-	.	Parent=Os10t0563200-01
Chr10	irgsp1_rep	CDS	22234876	22235256	.	-	0	Parent=Os10t0563200-01
Chr10	irgsp1_rep	CDS	22234620	22234778	.	-	0	Parent=Os10t0563200-01
Chr10	irgsp1_rep	CDS	22234453	22234533	.	-	0	Parent=Os10t0563200-01
Chr10	irgsp1_rep	CDS	22234220	22234351	.	-	0	Parent=Os10t0563200-01
Chr10	irgsp1_rep	CDS	22233434	22233561	.	-	0	Parent=Os10t0563200-01
Chr10	irgsp1_rep	CDS	22233237	22233324	.	-	1	Parent=Os10t0563200-01
Chr10	irgsp1_rep	CDS	22232764	22232858	.	-	0	Parent=Os10t0563200-01
Chr10	irgsp1_rep	CDS	22231462	22231525	.	-	1	Parent=Os10t0563200-01
Chr10	irgsp1_rep	CDS	22230219	22230394	.	-	0	Parent=Os10t0563200-01
Chr10	irgsp1_rep	CDS	22228909	22229130	.	-	1	Parent=Os10t0563200-01
Chr10	irgsp1_rep	CDS	22228637	22228721	.	-	1	Parent=Os10t0563200-01
Chr10	irgsp1_rep	CDS	22228136	22228312	.	-	0	Parent=Os10t0563200-01
Chr10	irgsp1_rep	three_prime_UTR	22227629	22228135	.	-	.	Parent=Os10t0563200-01
Chr10	irgsp1_rep	mRNA	22236918	22242075	.	-	.	ID=Os10t0563300-01;Name=Os10t0563300-01;Locus_id=Os10g0563300;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK122086 (DDBJ%2C Best hit);ORF_evidence=Q6V5J7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),Six-bladed beta-propeller%2C TolB-like (IPR011042),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40 repeat%2C subgroup (IPR019781);NIAS_FLcDNA=J033122L07;Expression=AK122086;TENOR=Os10t0563300-01;KEGG=Os10t0563300-01
Chr10	irgsp1_rep	five_prime_UTR	22241902	22242075	.	-	.	Parent=Os10t0563300-01
Chr10	irgsp1_rep	CDS	22241785	22241901	.	-	0	Parent=Os10t0563300-01
Chr10	irgsp1_rep	CDS	22239383	22239871	.	-	0	Parent=Os10t0563300-01
Chr10	irgsp1_rep	CDS	22238464	22238685	.	-	0	Parent=Os10t0563300-01
Chr10	irgsp1_rep	CDS	22238286	22238370	.	-	0	Parent=Os10t0563300-01
Chr10	irgsp1_rep	CDS	22238033	22238143	.	-	2	Parent=Os10t0563300-01
Chr10	irgsp1_rep	CDS	22237282	22237670	.	-	2	Parent=Os10t0563300-01
Chr10	irgsp1_rep	three_prime_UTR	22236918	22237281	.	-	.	Parent=Os10t0563300-01
Chr10	irgsp1_rep	mRNA	22237282	22238647	.	+	.	ID=Os10t0563350-00;Name=Os10t0563350-00;Locus_id=Os10g0563350;Note=Non-protein coding transcript.;Transcript_evidence=BT016942 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0563350-00
Chr10	irgsp1_rep	exon	22237282	22237668	.	+	.	Parent=Os10t0563350-00
Chr10	irgsp1_rep	exon	22238031	22238133	.	+	.	Parent=Os10t0563350-00
Chr10	irgsp1_rep	exon	22238277	22238372	.	+	.	Parent=Os10t0563350-00
Chr10	irgsp1_rep	exon	22238458	22238647	.	+	.	Parent=Os10t0563350-00
Chr10	irgsp1_rep	mRNA	22244119	22247190	.	+	.	ID=Os10t0563400-01;Name=Os10t0563400-01;Locus_id=Os10g0563400;Note=Conserved hypothetical protein.;Transcript_evidence=AK121988 (DDBJ%2C Best hit);ORF_evidence=Q9AY53 (UniProt);NIAS_FLcDNA=J033109B11;Expression=AK121988;TENOR=Os10t0563400-01;KEGG=Os10t0563400-01
Chr10	irgsp1_rep	five_prime_UTR	22244119	22244173	.	+	.	Parent=Os10t0563400-01
Chr10	irgsp1_rep	CDS	22244174	22244315	.	+	0	Parent=Os10t0563400-01
Chr10	irgsp1_rep	CDS	22244763	22244851	.	+	2	Parent=Os10t0563400-01
Chr10	irgsp1_rep	CDS	22245000	22245075	.	+	0	Parent=Os10t0563400-01
Chr10	irgsp1_rep	CDS	22245730	22245779	.	+	2	Parent=Os10t0563400-01
Chr10	irgsp1_rep	CDS	22245862	22246173	.	+	0	Parent=Os10t0563400-01
Chr10	irgsp1_rep	CDS	22246325	22246363	.	+	0	Parent=Os10t0563400-01
Chr10	irgsp1_rep	CDS	22246699	22246887	.	+	0	Parent=Os10t0563400-01
Chr10	irgsp1_rep	three_prime_UTR	22246888	22247190	.	+	.	Parent=Os10t0563400-01
Chr10	irgsp1_rep	mRNA	22247752	22252171	.	+	.	ID=Os10t0563500-01;Name=Os10t0563500-01;Locus_id=Os10g0563500;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK101930 (DDBJ%2C Best hit);ORF_evidence=Q336S1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033073C12;Expression=AK101930;TENOR=Os10t0563500-01;KEGG=Os10t0563500-01 (EC:2.7.11.1)
Chr10	irgsp1_rep	five_prime_UTR	22247752	22247872	.	+	.	Parent=Os10t0563500-01
Chr10	irgsp1_rep	CDS	22247873	22248254	.	+	0	Parent=Os10t0563500-01
Chr10	irgsp1_rep	CDS	22248346	22248419	.	+	2	Parent=Os10t0563500-01
Chr10	irgsp1_rep	CDS	22249048	22250022	.	+	0	Parent=Os10t0563500-01
Chr10	irgsp1_rep	CDS	22250196	22250262	.	+	0	Parent=Os10t0563500-01
Chr10	irgsp1_rep	CDS	22250344	22250406	.	+	2	Parent=Os10t0563500-01
Chr10	irgsp1_rep	CDS	22250580	22250643	.	+	2	Parent=Os10t0563500-01
Chr10	irgsp1_rep	CDS	22250741	22250834	.	+	1	Parent=Os10t0563500-01
Chr10	irgsp1_rep	CDS	22250931	22251014	.	+	0	Parent=Os10t0563500-01
Chr10	irgsp1_rep	CDS	22251102	22251191	.	+	0	Parent=Os10t0563500-01
Chr10	irgsp1_rep	CDS	22251287	22251314	.	+	0	Parent=Os10t0563500-01
Chr10	irgsp1_rep	CDS	22251696	22252171	.	+	2	Parent=Os10t0563500-01
Chr10	irgsp1_rep	mRNA	22247774	22249962	.	+	.	ID=Os10t0563500-02;Name=Os10t0563500-02;Locus_id=Os10g0563500;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=AK110827 (DDBJ%2C Best hit);ORF_evidence=Q336S1 (UniProt);NIAS_FLcDNA=002-171-H09;Expression=AK110827;TENOR=Os10t0563500-02;KEGG=Os10t0563500-02 (EC:2.7.11.1)
Chr10	irgsp1_rep	five_prime_UTR	22247774	22247872	.	+	.	Parent=Os10t0563500-02
Chr10	irgsp1_rep	CDS	22247873	22248254	.	+	0	Parent=Os10t0563500-02
Chr10	irgsp1_rep	CDS	22248346	22248419	.	+	2	Parent=Os10t0563500-02
Chr10	irgsp1_rep	CDS	22249048	22249962	.	+	0	Parent=Os10t0563500-02
Chr10	irgsp1_rep	mRNA	22252786	22253234	.	+	.	ID=Os10t0563550-00;Name=Os10t0563550-00;Locus_id=Os10g0563550;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=EU948951 (DDBJ);ORF_evidence=Q336S1 (UniProt);GO=Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009);TENOR=Os10t0563550-00;KEGG=Os10t0563550-00 (EC:2.7.11.1)
Chr10	irgsp1_rep	CDS	22252786	22253145	.	+	0	Parent=Os10t0563550-00
Chr10	irgsp1_rep	three_prime_UTR	22253146	22253234	.	+	.	Parent=Os10t0563550-00
Chr10	irgsp1_rep	mRNA	22254783	22257075	.	+	.	ID=Os10t0563600-01;Name=Os10t0563600-01;Locus_id=Os10g0563600;Oryzabase Gene Symbol Synonym(s)=OsMSRA4%2C MSRA4%2C OsMSRA4.1%2C MSRA4.1;Oryzabase Gene Name Synonym(s)=Methionine sulfoxide reductase A4%2C Methionine sulfoxide reductase A4.1;Note=Similar to Peptide methionine sulfoxide reductase (EC 1.8.4.6) (Protein- methionine-S-oxide reductase) (Peptide Met(O) reductase).;Transcript_evidence=AK067167 (DDBJ%2C Best hit);ORF_evidence=Q336R9 (UniProt);GO=Biological Process: protein metabolic process (GO:0019538),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on a sulfur group of donors%2C disulfide as acceptor (GO:0016671);InterPro=Peptide methionine sulphoxide reductase MsrA (IPR002569);NIAS_FLcDNA=J013096G11;Oryzabase=20907;Expression=AK067167;TENOR=Os10t0563600-01;KEGG=Os10t0563600-01 (EC:1.8.4.11%2C EC:1.8.4.6)
Chr10	irgsp1_rep	five_prime_UTR	22254783	22254887	.	+	.	Parent=Os10t0563600-01
Chr10	irgsp1_rep	CDS	22254888	22255427	.	+	0	Parent=Os10t0563600-01
Chr10	irgsp1_rep	CDS	22256604	22256855	.	+	0	Parent=Os10t0563600-01
Chr10	irgsp1_rep	three_prime_UTR	22256856	22257075	.	+	.	Parent=Os10t0563600-01
Chr10	irgsp1_rep	mRNA	22254887	22256429	.	+	.	ID=Os10t0563600-02;Name=Os10t0563600-02;Locus_id=Os10g0563600;Oryzabase Gene Symbol Synonym(s)=OsMSRA4%2C MSRA4%2C OsMSRA4.1%2C MSRA4.1;Oryzabase Gene Name Synonym(s)=Methionine sulfoxide reductase A4%2C Methionine sulfoxide reductase A4.1;Note=Similar to peptide methionine sulfoxide reductase.;Transcript_evidence=AK109715 (DDBJ%2C Best hit);ORF_evidence=Q336R9-2 (UniProt);GO=Biological Process: protein metabolic process (GO:0019538),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on a sulfur group of donors%2C disulfide as acceptor (GO:0016671);InterPro=Peptide methionine sulphoxide reductase MsrA (IPR002569);NIAS_FLcDNA=002-145-H09;Oryzabase=20907;Expression=AK109715;TENOR=Os10t0563600-02;KEGG=Os10t0563600-02 (EC:1.8.4.11)
Chr10	irgsp1_rep	five_prime_UTR	22254887	22254887	.	+	.	Parent=Os10t0563600-02
Chr10	irgsp1_rep	CDS	22254888	22255523	.	+	0	Parent=Os10t0563600-02
Chr10	irgsp1_rep	three_prime_UTR	22255524	22256429	.	+	.	Parent=Os10t0563600-02
Chr10	irgsp1_rep	mRNA	22258025	22260435	.	-	.	ID=Os10t0563700-01;Name=Os10t0563700-01;Locus_id=Os10g0563700;RAP-DB Gene Symbol Synonym(s)=OsNDPK4;RAP-DB Gene Name Synonym(s)=nucleoside diphosphate kinase 4;Oryzabase Gene Name Synonym(s)=Awd protein;Note=Nucleoside diphosphate kinase%2C Root development%2C Defense response%2C Energy homeostasis;Transcript_evidence=AK072751;ORF_evidence=Q7XC37;GO=Biological Process: nucleoside diphosphate phosphorylation (GO:0006165),Biological Process: GTP biosynthetic process (GO:0006183),Biological Process: UTP biosynthetic process (GO:0006228),Biological Process: CTP biosynthetic process (GO:0006241),Molecular Function: nucleoside diphosphate kinase activity (GO:0004550);InterPro=Nucleoside diphosphate kinase-like domain superfamily (IPR036850),Nucleoside diphosphate kinase (IPR001564),Nucleoside diphosphate kinase-like domain (IPR034907),Nucleoside diphosphate kinase%2C active site (IPR023005);NIAS_FLcDNA=J023136C24;Manual Curation=March 12%2C 2020;Literature_PMID=32152790;Oryzabase=16690;Expression=AK072751;TENOR=Os10t0563700-01;KEGG=Os10t0563700-01 (EC:2.7.4.6);Subcellular location=cytosol (GO:0005829)
Chr10	irgsp1_rep	five_prime_UTR	22260356	22260435	.	-	.	Parent=Os10t0563700-01
Chr10	irgsp1_rep	CDS	22260299	22260355	.	-	0	Parent=Os10t0563700-01
Chr10	irgsp1_rep	CDS	22260161	22260209	.	-	0	Parent=Os10t0563700-01
Chr10	irgsp1_rep	CDS	22259635	22259866	.	-	2	Parent=Os10t0563700-01
Chr10	irgsp1_rep	CDS	22258222	22258339	.	-	1	Parent=Os10t0563700-01
Chr10	irgsp1_rep	three_prime_UTR	22258025	22258221	.	-	.	Parent=Os10t0563700-01
Chr10	irgsp1_rep	mRNA	22261588	22261963	.	-	.	ID=Os10t0563800-00;Name=Os10t0563800-00;Locus_id=Os10g0563800;Note=Hypothetical conserved gene.;Transcript_evidence=CT835727 (DDBJ%2C Best hit);ORF_evidence=NP_001065405.2 (RefSeq);TENOR=Os10t0563800-00;KEGG=Os10t0563800-00
Chr10	irgsp1_rep	CDS	22261874	22261963	.	-	0	Parent=Os10t0563800-00
Chr10	irgsp1_rep	three_prime_UTR	22261588	22261873	.	-	.	Parent=Os10t0563800-00
Chr10	irgsp1_rep	mRNA	22268600	22270503	.	+	.	ID=Os10t0563900-01;Name=Os10t0563900-01;Locus_id=Os10g0563900;RAP-DB Gene Symbol Synonym(s)=OsCYCP4%3B1;RAP-DB Gene Name Synonym(s)=P-type cyclin 4%3B1;CGSNL Gene Symbol=CYCU4%3B3;CGSNL Gene Name=CYCLIN-U4-3;Oryzabase Gene Symbol Synonym(s)=CycU4%3B3%2C CycU4%3Bos%3B3%2C Orysa%3BCycU4%3B3%2C OsCYCP4%3B1%2C CyclinD4%3B1;Oryzabase Gene Name Synonym(s)=U-type cyclin 4%3B3%2C P-type cyclin 4%3B1;Note=P-type cyclin%2C PHO80 homologous protein%2C Coordination of phosphate starvation signaling and cell cycle progression under phosphate starvation stress;Transcript_evidence=AK107529;ORF_evidence=Q7XC35;GO=Biological Process: regulation of cyclin-dependent protein serine/threonine kinase activity (GO:0000079),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin-like superfamily (IPR036915),Cyclin PHO80-like (IPR013922),Cyclin P/U (IPR012389);NIAS_FLcDNA=002-129-G08;Manual Curation=November 13%2C 2019;Literature_PMID=31697021,25315105;Oryzabase=13284;Expression=AK107529;TENOR=Os10t0563900-01;KEGG=Os10t0563900-01
Chr10	irgsp1_rep	five_prime_UTR	22268600	22268640	.	+	.	Parent=Os10t0563900-01
Chr10	irgsp1_rep	CDS	22268641	22268990	.	+	0	Parent=Os10t0563900-01
Chr10	irgsp1_rep	CDS	22270050	22270338	.	+	1	Parent=Os10t0563900-01
Chr10	irgsp1_rep	three_prime_UTR	22270339	22270503	.	+	.	Parent=Os10t0563900-01
Chr10	irgsp1_rep	mRNA	22274545	22278013	.	+	.	ID=Os10t0564000-01;Name=Os10t0564000-01;Locus_id=Os10g0564000;Note=K Homology%2C type 1%2C subgroup domain containing protein.;Transcript_evidence=AK243358 (DDBJ%2C Best hit);ORF_evidence=NP_001148766.1 (RefSeq);GO=Molecular Function: RNA binding (GO:0003723);InterPro=K Homology (IPR004087),K Homology%2C type 1 (IPR004088),K Homology%2C type 1%2C subgroup (IPR018111);NIAS_FLcDNA=J100061G17;TENOR=Os10t0564000-01;KEGG=Os10t0564000-01
Chr10	irgsp1_rep	five_prime_UTR	22274545	22274563	.	+	.	Parent=Os10t0564000-01
Chr10	irgsp1_rep	CDS	22274564	22274869	.	+	0	Parent=Os10t0564000-01
Chr10	irgsp1_rep	CDS	22275621	22275876	.	+	0	Parent=Os10t0564000-01
Chr10	irgsp1_rep	CDS	22276424	22276578	.	+	2	Parent=Os10t0564000-01
Chr10	irgsp1_rep	CDS	22276656	22276928	.	+	0	Parent=Os10t0564000-01
Chr10	irgsp1_rep	CDS	22277161	22277355	.	+	0	Parent=Os10t0564000-01
Chr10	irgsp1_rep	CDS	22277446	22277637	.	+	0	Parent=Os10t0564000-01
Chr10	irgsp1_rep	three_prime_UTR	22277638	22278013	.	+	.	Parent=Os10t0564000-01
Chr10	irgsp1_rep	mRNA	22275605	22277705	.	-	.	ID=Os10t0564050-00;Name=Os10t0564050-00;Locus_id=Os10g0564050;Note=Non-protein coding transcript.;Transcript_evidence=BT018439 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0564050-00
Chr10	irgsp1_rep	exon	22277462	22277705	.	-	.	Parent=Os10t0564050-00
Chr10	irgsp1_rep	exon	22277148	22277377	.	-	.	Parent=Os10t0564050-00
Chr10	irgsp1_rep	exon	22276670	22276905	.	-	.	Parent=Os10t0564050-00
Chr10	irgsp1_rep	exon	22276439	22276592	.	-	.	Parent=Os10t0564050-00
Chr10	irgsp1_rep	exon	22275605	22275886	.	-	.	Parent=Os10t0564050-00
Chr10	irgsp1_rep	mRNA	22278681	22281361	.	-	.	ID=Os10t0564100-01;Name=Os10t0564100-01;Locus_id=Os10g0564100;Oryzabase Gene Symbol Synonym(s)=OsMED31b%2C MED31b%2C OsMed31_2%2C Med31_2;Oryzabase Gene Name Synonym(s)=Mediator complex protein OsMED31b%2C Mediator 31_2;Note=SOH1 family protein.;Transcript_evidence=AK069258 (DDBJ%2C Best hit);ORF_evidence=B6TEG4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: mediator complex (GO:0016592),Molecular Function: RNA polymerase II transcription cofactor activity (GO:0001104);InterPro=Mediator complex%2C subunit Med31 (IPR008831);NIAS_FLcDNA=J023012G10;Oryzabase=18698;Expression=AK069258;TENOR=Os10t0564100-01;KEGG=Os10t0564100-01
Chr10	irgsp1_rep	five_prime_UTR	22281128	22281361	.	-	.	Parent=Os10t0564100-01
Chr10	irgsp1_rep	five_prime_UTR	22280990	22281003	.	-	.	Parent=Os10t0564100-01
Chr10	irgsp1_rep	CDS	22280884	22280989	.	-	0	Parent=Os10t0564100-01
Chr10	irgsp1_rep	CDS	22280395	22280491	.	-	2	Parent=Os10t0564100-01
Chr10	irgsp1_rep	CDS	22280229	22280307	.	-	1	Parent=Os10t0564100-01
Chr10	irgsp1_rep	CDS	22279564	22279880	.	-	0	Parent=Os10t0564100-01
Chr10	irgsp1_rep	CDS	22278981	22278990	.	-	1	Parent=Os10t0564100-01
Chr10	irgsp1_rep	three_prime_UTR	22278681	22278980	.	-	.	Parent=Os10t0564100-01
Chr10	irgsp1_rep	mRNA	22284005	22285571	.	-	.	ID=Os10t0564150-00;Name=Os10t0564150-00;Locus_id=Os10g0564150;Note=Hypothetical gene.;Transcript_evidence=EU942717 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0564150-00;KEGG=Os10t0564150-00
Chr10	irgsp1_rep	five_prime_UTR	22285479	22285571	.	-	.	Parent=Os10t0564150-00
Chr10	irgsp1_rep	CDS	22285353	22285478	.	-	0	Parent=Os10t0564150-00
Chr10	irgsp1_rep	CDS	22284994	22285275	.	-	0	Parent=Os10t0564150-00
Chr10	irgsp1_rep	three_prime_UTR	22284005	22284993	.	-	.	Parent=Os10t0564150-00
Chr10	irgsp1_rep	mRNA	22284367	22285783	.	+	.	ID=Os10t0564200-01;Name=Os10t0564200-01;Locus_id=Os10g0564200;CGSNL Gene Symbol=MSL36;CGSNL Gene Name=MYB/SANT-LIKE 36;Oryzabase Gene Symbol Synonym(s)=OsMSL36;Oryzabase Gene Name Synonym(s)=Myb/SANT-LIKE 36;Note=Homeodomain-like containing protein.;Transcript_evidence=AK072487 (DDBJ%2C Best hit);ORF_evidence=Q9AY44 (UniProt);InterPro=MADF domain (IPR006578),MYB-like (IPR017877);NIAS_FLcDNA=J023131J20;Oryzabase=22967;Expression=AK072487;TENOR=Os10t0564200-01;KEGG=Os10t0564200-01
Chr10	irgsp1_rep	five_prime_UTR	22284367	22284480	.	+	.	Parent=Os10t0564200-01
Chr10	irgsp1_rep	CDS	22284481	22285491	.	+	0	Parent=Os10t0564200-01
Chr10	irgsp1_rep	three_prime_UTR	22285492	22285783	.	+	.	Parent=Os10t0564200-01
Chr10	irgsp1_rep	mRNA	22288665	22289384	.	-	.	ID=Os10t0564300-01;Name=Os10t0564300-01;Locus_id=Os10g0564300;Oryzabase Gene Name Synonym(s)=Ribosomal protein L27;Note=Similar to 60S ribosomal protein L27.;Transcript_evidence=AK066340 (DDBJ%2C Best hit);ORF_evidence=A2ZAB3 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L27e (IPR001141),KOW (IPR005824),Translation protein SH3-like%2C subgroup (IPR014722),Ribosomal protein L27e%2C conserved site (IPR018262);NIAS_FLcDNA=J013064A22;Oryzabase=17671;Expression=AK066340;TENOR=Os10t0564300-01;KEGG=Os10t0564300-01
Chr10	irgsp1_rep	five_prime_UTR	22289332	22289384	.	-	.	Parent=Os10t0564300-01
Chr10	irgsp1_rep	CDS	22288921	22289331	.	-	0	Parent=Os10t0564300-01
Chr10	irgsp1_rep	three_prime_UTR	22288665	22288920	.	-	.	Parent=Os10t0564300-01
Chr10	irgsp1_rep	mRNA	22289945	22293566	.	-	.	ID=Os10t0564400-01;Name=Os10t0564400-01;Locus_id=Os10g0564400;Oryzabase Gene Name Synonym(s)=Phospho 2-dehydro 3-deoxyheptonate aldolase 2;Note=Similar to Phospho-2-dehydro-3-deoxyheptonate aldolase 2%2C chloroplast precursor (EC 2.5.1.54) (Phospho-2-keto-3-deoxyheptonate aldolase 2) (DAHP synthetase 2) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2).;Transcript_evidence=AK109667 (DDBJ%2C Best hit);ORF_evidence=D0VBC1 (UniProt);GO=Biological Process: aromatic amino acid family biosynthetic process (GO:0009073),Molecular Function: 3-deoxy-7-phosphoheptulonate synthase activity (GO:0003849);InterPro=DAHP synthetase%2C class II (IPR002480);NIAS_FLcDNA=002-145-A06;Oryzabase=12458;Expression=AK109667;TENOR=Os10t0564400-01;KEGG=Os10t0564400-01 (EC:2.5.1.54)
Chr10	irgsp1_rep	five_prime_UTR	22293558	22293566	.	-	.	Parent=Os10t0564400-01
Chr10	irgsp1_rep	CDS	22293102	22293557	.	-	0	Parent=Os10t0564400-01
Chr10	irgsp1_rep	CDS	22291820	22292097	.	-	0	Parent=Os10t0564400-01
Chr10	irgsp1_rep	CDS	22291256	22291532	.	-	1	Parent=Os10t0564400-01
Chr10	irgsp1_rep	CDS	22290611	22290856	.	-	0	Parent=Os10t0564400-01
Chr10	irgsp1_rep	CDS	22290028	22290297	.	-	0	Parent=Os10t0564400-01
Chr10	irgsp1_rep	three_prime_UTR	22289945	22290027	.	-	.	Parent=Os10t0564400-01
Chr10	irgsp1_rep	mRNA	22289955	22293473	.	+	.	ID=Os10t0564450-00;Name=Os10t0564450-00;Locus_id=Os10g0564450;Note=Hypothetical protein.;Transcript_evidence=tplb0022g15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0564450-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	22289955	22290294	.	+	.	Parent=Os10t0564450-00
Chr10	irgsp1_rep	five_prime_UTR	22290609	22290847	.	+	.	Parent=Os10t0564450-00
Chr10	irgsp1_rep	five_prime_UTR	22291243	22291297	.	+	.	Parent=Os10t0564450-00
Chr10	irgsp1_rep	CDS	22291298	22291529	.	+	0	Parent=Os10t0564450-00
Chr10	irgsp1_rep	CDS	22291817	22291953	.	+	2	Parent=Os10t0564450-00
Chr10	irgsp1_rep	three_prime_UTR	22291954	22292095	.	+	.	Parent=Os10t0564450-00
Chr10	irgsp1_rep	three_prime_UTR	22293100	22293473	.	+	.	Parent=Os10t0564450-00
Chr10	irgsp1_rep	mRNA	22294896	22297645	.	-	.	ID=Os10t0564500-01;Name=Os10t0564500-01;Locus_id=Os10g0564500;RAP-DB Gene Symbol Synonym(s)=SAPK3%2C OsSAPK3%2C REK;RAP-DB Gene Name Synonym(s)=STRESS/ABA-ACTIVATED PROTEIN KINASE 3%2C stress/ABA-activated protein kinase 3%2C rice endosperm protein kinase%2C Stress-Activated Protein Kinase 3;CGSNL Gene Symbol=SAPK3;CGSNL Gene Name=STRESS/ABA-ACTIVATED PROTEIN KINASE 3;Oryzabase Gene Symbol Synonym(s)=OsSAPK3%2C REK;Oryzabase Gene Name Synonym(s)=stress/ABA-activated protein kinase 3%2C rice endosperm protein kinase%2C Stress-Activated Protein Kinase 3;Note=Serine/threonine protein kinase%2C Hyperosmotic stress response;Transcript_evidence=AB125304,AK103690;ORF_evidence=P0C5D6;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine/threonine/dual specificity protein kinase%2C catalytic  domain (IPR002290),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J033136G23;Manual Curation=December 14%2C 2015;Literature_PMID=15084714,9630507;Oryzabase=9811;Expression=AK103690;TENOR=Os10t0564500-01;KEGG=Os10t0564500-01 (EC:2.7.1.37, EC:2.7.11.11)
Chr10	irgsp1_rep	five_prime_UTR	22297528	22297645	.	-	.	Parent=Os10t0564500-01
Chr10	irgsp1_rep	CDS	22297405	22297527	.	-	0	Parent=Os10t0564500-01
Chr10	irgsp1_rep	CDS	22297128	22297202	.	-	0	Parent=Os10t0564500-01
Chr10	irgsp1_rep	CDS	22296760	22296861	.	-	0	Parent=Os10t0564500-01
Chr10	irgsp1_rep	CDS	22296618	22296671	.	-	0	Parent=Os10t0564500-01
Chr10	irgsp1_rep	CDS	22296433	22296525	.	-	0	Parent=Os10t0564500-01
Chr10	irgsp1_rep	CDS	22296206	22296302	.	-	0	Parent=Os10t0564500-01
Chr10	irgsp1_rep	CDS	22295804	22295904	.	-	2	Parent=Os10t0564500-01
Chr10	irgsp1_rep	CDS	22295601	22295699	.	-	0	Parent=Os10t0564500-01
Chr10	irgsp1_rep	CDS	22295075	22295335	.	-	0	Parent=Os10t0564500-01
Chr10	irgsp1_rep	three_prime_UTR	22294896	22295074	.	-	.	Parent=Os10t0564500-01
Chr10	irgsp1_rep	mRNA	22298894	22308594	.	+	.	ID=Os10t0564800-01;Name=Os10t0564800-01;Locus_id=Os10g0564800;RAP-DB Gene Symbol Synonym(s)=CBL1%2C OsCBL1%2C Os-CBL1;RAP-DB Gene Name Synonym(s)=CALCINEURIN B-LIKE PROTEIN 1%2C Calcineurin B-like protein 1%2C Calcineurin B-Like protein1;CGSNL Gene Symbol=CBL1;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsCBL1%2C Os-CBL1;Oryzabase Gene Name Synonym(s)=Calcineurin B-like protein 1%2C Calcineurin B-Like protein1;Note=Calcineurin B-like protein%2C Calcium sensor protein%2C Reguration of potassium uptake by CBL1-CIPK23 complex;Transcript_evidence=AK243065,DQ201195;ORF_evidence=Q7XC27;GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcineurin B protein (IPR015757),EF-hand domain pair (IPR011992),EF-hand domain (IPR002048),EF-Hand 1%2C calcium-binding site (IPR018247);NIAS_FLcDNA=J100015N03;Manual Curation=November 14%2C 2014;Literature_PMID=25096783,18395997;Oryzabase=6097;TENOR=Os10t0564800-01;KEGG=Os10t0564800-01
Chr10	irgsp1_rep	five_prime_UTR	22298894	22299139	.	+	.	Parent=Os10t0564800-01
Chr10	irgsp1_rep	CDS	22299140	22299218	.	+	0	Parent=Os10t0564800-01
Chr10	irgsp1_rep	CDS	22299359	22299441	.	+	2	Parent=Os10t0564800-01
Chr10	irgsp1_rep	CDS	22306466	22306525	.	+	0	Parent=Os10t0564800-01
Chr10	irgsp1_rep	CDS	22306640	22306748	.	+	0	Parent=Os10t0564800-01
Chr10	irgsp1_rep	CDS	22306829	22306881	.	+	2	Parent=Os10t0564800-01
Chr10	irgsp1_rep	CDS	22307102	22307182	.	+	0	Parent=Os10t0564800-01
Chr10	irgsp1_rep	CDS	22307282	22307394	.	+	0	Parent=Os10t0564800-01
Chr10	irgsp1_rep	CDS	22308224	22308287	.	+	1	Parent=Os10t0564800-01
Chr10	irgsp1_rep	three_prime_UTR	22308288	22308594	.	+	.	Parent=Os10t0564800-01
Chr10	irgsp1_rep	mRNA	22308996	22313829	.	+	.	ID=Os10t0564900-01;Name=Os10t0564900-01;Locus_id=Os10g0564900;Note=Similar to Protein kinase CK2 regulatory subunit CK2B2.;Transcript_evidence=AK111555 (DDBJ%2C Best hit);ORF_evidence=Q0KKA4 (UniProt);GO=Cellular Component: protein kinase CK2 complex (GO:0005956),Molecular Function: protein kinase regulator activity (GO:0019887);InterPro=Casein kinase II%2C regulatory subunit (IPR000704),Casein kinase II%2C regulatory subunit%2C alpha-helical (IPR016149),Casein kinase II%2C regulatory subunit%2C beta-sheet (IPR016150);NIAS_FLcDNA=J013051E04;Expression=AK111555;TENOR=Os10t0564900-01;KEGG=Os10t0564900-01
Chr10	irgsp1_rep	five_prime_UTR	22308996	22309146	.	+	.	Parent=Os10t0564900-01
Chr10	irgsp1_rep	CDS	22309147	22309357	.	+	0	Parent=Os10t0564900-01
Chr10	irgsp1_rep	CDS	22312090	22312308	.	+	2	Parent=Os10t0564900-01
Chr10	irgsp1_rep	CDS	22312572	22312681	.	+	2	Parent=Os10t0564900-01
Chr10	irgsp1_rep	CDS	22312774	22312939	.	+	0	Parent=Os10t0564900-01
Chr10	irgsp1_rep	CDS	22313460	22313593	.	+	2	Parent=Os10t0564900-01
Chr10	irgsp1_rep	three_prime_UTR	22313594	22313829	.	+	.	Parent=Os10t0564900-01
Chr10	irgsp1_rep	mRNA	22316009	22320257	.	+	.	ID=Os10t0565000-01;Name=Os10t0565000-01;Locus_id=Os10g0565000;Note=Similar to ICE-like protease p20 domain containing protein.;Transcript_evidence=AK120574 (DDBJ%2C Best hit);ORF_evidence=NP_001152273.1 (RefSeq);InterPro=MORN motif (IPR003409);NIAS_FLcDNA=J013134L11;TENOR=Os10t0565000-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	22316009	22316105	.	+	.	Parent=Os10t0565000-01
Chr10	irgsp1_rep	CDS	22316106	22317076	.	+	0	Parent=Os10t0565000-01
Chr10	irgsp1_rep	CDS	22319182	22319440	.	+	1	Parent=Os10t0565000-01
Chr10	irgsp1_rep	CDS	22319548	22319721	.	+	0	Parent=Os10t0565000-01
Chr10	irgsp1_rep	three_prime_UTR	22319722	22320257	.	+	.	Parent=Os10t0565000-01
Chr10	irgsp1_rep	mRNA	22320644	22323805	.	+	.	ID=Os10t0565100-00;Name=Os10t0565100-00;Locus_id=Os10g0565100;Note=Peptidase C14%2C caspase catalytic domain containing protein.;Transcript_evidence=AK362874 (DDBJ);ORF_evidence=NP_171719.2 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197);InterPro=Zinc finger%2C LSD1-type (IPR005735),Peptidase C14%2C caspase catalytic (IPR011600);TENOR=Os10t0565100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	22320644	22321289	.	+	0	Parent=Os10t0565100-00
Chr10	irgsp1_rep	CDS	22321898	22322228	.	+	2	Parent=Os10t0565100-00
Chr10	irgsp1_rep	CDS	22322873	22322993	.	+	1	Parent=Os10t0565100-00
Chr10	irgsp1_rep	CDS	22323210	22323425	.	+	0	Parent=Os10t0565100-00
Chr10	irgsp1_rep	CDS	22323591	22323650	.	+	0	Parent=Os10t0565100-00
Chr10	irgsp1_rep	three_prime_UTR	22323651	22323805	.	+	.	Parent=Os10t0565100-00
Chr10	irgsp1_rep	mRNA	22324232	22327654	.	+	.	ID=Os10t0565150-01;Name=Os10t0565150-01;Locus_id=Os10g0565150;CGSNL Gene Symbol=BMY6;CGSNL Gene Name=BETA-AMYLASE 6;Oryzabase Gene Name Synonym(s)=beta-amylase 6;Note=Hypothetical gene.;Transcript_evidence=AK287595 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065048G10;Oryzabase=21704;TENOR=Os10t0565150-01;KEGG=Os10t0565150-01
Chr10	irgsp1_rep	five_prime_UTR	22324232	22324375	.	+	.	Parent=Os10t0565150-01
Chr10	irgsp1_rep	CDS	22324376	22325308	.	+	0	Parent=Os10t0565150-01
Chr10	irgsp1_rep	CDS	22325475	22325585	.	+	0	Parent=Os10t0565150-01
Chr10	irgsp1_rep	CDS	22325806	22326016	.	+	0	Parent=Os10t0565150-01
Chr10	irgsp1_rep	CDS	22326969	22327315	.	+	2	Parent=Os10t0565150-01
Chr10	irgsp1_rep	three_prime_UTR	22327316	22327654	.	+	.	Parent=Os10t0565150-01
Chr10	irgsp1_rep	mRNA	22326723	22327664	.	-	.	ID=Os10t0565200-00;Name=Os10t0565200-00;Locus_id=Os10g0565200;Oryzabase Gene Name Synonym(s)=beta-amylase;Note=Hypothetical conserved gene.;Transcript_evidence=CT835751 (DDBJ%2C Best hit);ORF_evidence=Q7XC23 (UniProt);GO=Biological Process: polysaccharide catabolic process (GO:0000272),Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: beta-amylase activity (GO:0016161),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 14 (IPR001554),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 14%2C conserved site (IPR018238);Oryzabase=21708;TENOR=Os10t0565200-00;KEGG=Os10t0565200-00 (EC:3.2.1.2)
Chr10	irgsp1_rep	five_prime_UTR	22327490	22327664	.	-	.	Parent=Os10t0565200-00
Chr10	irgsp1_rep	CDS	22326965	22327489	.	-	0	Parent=Os10t0565200-00
Chr10	irgsp1_rep	three_prime_UTR	22326723	22326964	.	-	.	Parent=Os10t0565200-00
Chr10	irgsp1_rep	mRNA	22332975	22339916	.	-	.	ID=Os10t0565300-01;Name=Os10t0565300-01;Locus_id=Os10g0565300;Note=Vacuolar protein sorting-associated protein 62 domain containing protein.;Transcript_evidence=AK107429 (DDBJ%2C Best hit);ORF_evidence=B9G718 (UniProt);InterPro=Vacuolar protein sorting-associated protein 62 (IPR009291);NIAS_FLcDNA=002-128-A05;TENOR=Os10t0565300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	22339834	22339916	.	-	0	Parent=Os10t0565300-01
Chr10	irgsp1_rep	CDS	22339244	22339753	.	-	1	Parent=Os10t0565300-01
Chr10	irgsp1_rep	CDS	22338694	22338871	.	-	1	Parent=Os10t0565300-01
Chr10	irgsp1_rep	CDS	22338466	22338602	.	-	0	Parent=Os10t0565300-01
Chr10	irgsp1_rep	CDS	22337546	22337672	.	-	1	Parent=Os10t0565300-01
Chr10	irgsp1_rep	CDS	22336507	22336728	.	-	0	Parent=Os10t0565300-01
Chr10	irgsp1_rep	CDS	22336069	22336428	.	-	0	Parent=Os10t0565300-01
Chr10	irgsp1_rep	CDS	22335092	22335250	.	-	0	Parent=Os10t0565300-01
Chr10	irgsp1_rep	CDS	22334737	22335012	.	-	0	Parent=Os10t0565300-01
Chr10	irgsp1_rep	CDS	22334428	22334628	.	-	0	Parent=Os10t0565300-01
Chr10	irgsp1_rep	CDS	22334267	22334319	.	-	0	Parent=Os10t0565300-01
Chr10	irgsp1_rep	CDS	22334041	22334149	.	-	1	Parent=Os10t0565300-01
Chr10	irgsp1_rep	CDS	22333335	22333676	.	-	0	Parent=Os10t0565300-01
Chr10	irgsp1_rep	three_prime_UTR	22332975	22333334	.	-	.	Parent=Os10t0565300-01
Chr10	irgsp1_rep	mRNA	22353506	22354426	.	-	.	ID=Os10t0565401-00;Name=Os10t0565401-00;Locus_id=Os10g0565401;Note=Hypothetical conserved gene.;Transcript_evidence=AK333806 (DDBJ);ORF_evidence=B9G718 (UniProt);TENOR=Os10t0565401-00;KEGG=Os10t0565401-00
Chr10	irgsp1_rep	CDS	22354352	22354426	.	-	0	Parent=Os10t0565401-00
Chr10	irgsp1_rep	CDS	22353506	22354015	.	-	0	Parent=Os10t0565401-00
Chr10	irgsp1_rep	mRNA	22373332	22374952	.	-	.	ID=Os10t0565500-01;Name=Os10t0565500-01;Locus_id=Os10g0565500;Note=Similar to Retrotransposon protein.;Transcript_evidence=AK287982 (DDBJ%2C Best hit);ORF_evidence=B6SJU9 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),S-ribonuclease binding protein%2C SBP1%2C pollen (IPR017066);NIAS_FLcDNA=J075086M11;TENOR=Os10t0565500-01;KEGG=Os10t0565500-01
Chr10	irgsp1_rep	five_prime_UTR	22374798	22374952	.	-	.	Parent=Os10t0565500-01
Chr10	irgsp1_rep	CDS	22374721	22374797	.	-	0	Parent=Os10t0565500-01
Chr10	irgsp1_rep	CDS	22374525	22374631	.	-	1	Parent=Os10t0565500-01
Chr10	irgsp1_rep	CDS	22374134	22374441	.	-	2	Parent=Os10t0565500-01
Chr10	irgsp1_rep	CDS	22373465	22374028	.	-	0	Parent=Os10t0565500-01
Chr10	irgsp1_rep	three_prime_UTR	22373332	22373464	.	-	.	Parent=Os10t0565500-01
Chr10	irgsp1_rep	mRNA	22388699	22395755	.	+	.	ID=Os10t0565600-01;Name=Os10t0565600-01;Locus_id=Os10g0565600;RAP-DB Gene Symbol Synonym(s)=FRRP1%2C OsHUB2%2C HUB2;RAP-DB Gene Name Synonym(s)=Flowering-Related RING Protein 1%2C HISTONE MONOUBIQUITINATION2;CGSNL Gene Symbol=HUB2;CGSNL Gene Name=HISTONE MONOUBIQUITINATION 2;Oryzabase Gene Symbol Synonym(s)=OsHUB2%2C FRRP1%2C DLN241%2C OsDLN241;Oryzabase Gene Name Synonym(s)=HISTONE MONOUBIQUITINATION2%2C Flowering-Related RING Protein 1%2C DLN repressor 241%2C DLN motif protein 241;Note=E3 ligases of H2Bub1%2C C3HC4-type RING finger protein%2C Transcriptional regulation of anther development%2C Regulaton of flowering time by affecting histone H2B monoubiquitination;Transcript_evidence=AK103864;ORF_evidence=Q336R3;InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING-type%2C conserved site (IPR017907);NIAS_FLcDNA=J033149F01;Manual Curation=July 7%2C 2017;Literature_PMID=26934377,26143250;Oryzabase=19841;Expression=AK103864;KEGG=Os10t0565600-01 (EC:6.3.2.27)
Chr10	irgsp1_rep	five_prime_UTR	22388699	22388853	.	+	.	Parent=Os10t0565600-01
Chr10	irgsp1_rep	CDS	22389191	22389352	.	+	0	Parent=Os10t0565600-01
Chr10	irgsp1_rep	CDS	22389448	22389535	.	+	0	Parent=Os10t0565600-01
Chr10	irgsp1_rep	CDS	22389626	22389856	.	+	2	Parent=Os10t0565600-01
Chr10	irgsp1_rep	CDS	22389950	22390117	.	+	2	Parent=Os10t0565600-01
Chr10	irgsp1_rep	CDS	22390387	22390580	.	+	2	Parent=Os10t0565600-01
Chr10	irgsp1_rep	CDS	22390730	22390813	.	+	0	Parent=Os10t0565600-01
Chr10	irgsp1_rep	CDS	22390894	22391013	.	+	0	Parent=Os10t0565600-01
Chr10	irgsp1_rep	CDS	22391107	22391293	.	+	0	Parent=Os10t0565600-01
Chr10	irgsp1_rep	CDS	22391392	22391552	.	+	2	Parent=Os10t0565600-01
Chr10	irgsp1_rep	CDS	22392294	22392365	.	+	0	Parent=Os10t0565600-01
Chr10	irgsp1_rep	CDS	22392816	22392892	.	+	0	Parent=Os10t0565600-01
Chr10	irgsp1_rep	CDS	22393317	22393511	.	+	1	Parent=Os10t0565600-01
Chr10	irgsp1_rep	CDS	22394066	22394138	.	+	1	Parent=Os10t0565600-01
Chr10	irgsp1_rep	CDS	22394214	22394300	.	+	0	Parent=Os10t0565600-01
Chr10	irgsp1_rep	CDS	22394485	22394622	.	+	0	Parent=Os10t0565600-01
Chr10	irgsp1_rep	CDS	22394760	22394962	.	+	0	Parent=Os10t0565600-01
Chr10	irgsp1_rep	CDS	22395048	22395210	.	+	1	Parent=Os10t0565600-01
Chr10	irgsp1_rep	CDS	22395440	22395571	.	+	0	Parent=Os10t0565600-01
Chr10	irgsp1_rep	three_prime_UTR	22395572	22395755	.	+	.	Parent=Os10t0565600-01
Chr10	irgsp1_rep	mRNA	22400276	22410677	.	+	.	ID=Os10t0565700-01;Name=Os10t0565700-01;Locus_id=Os10g0565700;Note=Similar to SNF2 family N-terminal domain containing protein.;Transcript_evidence=AK122019 (DDBJ%2C Best hit);ORF_evidence=Q7XC16 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP binding (GO:0005524);InterPro=SNF2-related (IPR000330);NIAS_FLcDNA=J033111M24;TENOR=Os10t0565700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	22400276	22400562	.	+	.	Parent=Os10t0565700-01
Chr10	irgsp1_rep	five_prime_UTR	22400679	22401066	.	+	.	Parent=Os10t0565700-01
Chr10	irgsp1_rep	five_prime_UTR	22401386	22401510	.	+	.	Parent=Os10t0565700-01
Chr10	irgsp1_rep	five_prime_UTR	22402371	22402670	.	+	.	Parent=Os10t0565700-01
Chr10	irgsp1_rep	CDS	22402671	22402694	.	+	0	Parent=Os10t0565700-01
Chr10	irgsp1_rep	CDS	22408535	22408662	.	+	0	Parent=Os10t0565700-01
Chr10	irgsp1_rep	CDS	22408755	22408989	.	+	1	Parent=Os10t0565700-01
Chr10	irgsp1_rep	three_prime_UTR	22408990	22409699	.	+	.	Parent=Os10t0565700-01
Chr10	irgsp1_rep	three_prime_UTR	22409784	22409930	.	+	.	Parent=Os10t0565700-01
Chr10	irgsp1_rep	three_prime_UTR	22410023	22410145	.	+	.	Parent=Os10t0565700-01
Chr10	irgsp1_rep	three_prime_UTR	22410227	22410301	.	+	.	Parent=Os10t0565700-01
Chr10	irgsp1_rep	three_prime_UTR	22410391	22410677	.	+	.	Parent=Os10t0565700-01
Chr10	irgsp1_rep	mRNA	22400331	22410845	.	+	.	ID=Os10t0565700-02;Name=Os10t0565700-02;Locus_id=Os10g0565700;Note=Similar to SNF2 family N-terminal domain containing protein.;Transcript_evidence=AK109505 (DDBJ%2C Best hit);ORF_evidence=Q7XC16 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP binding (GO:0005524);InterPro=SNF2-related (IPR000330);NIAS_FLcDNA=002-100-A02;TENOR=Os10t0565700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	22400331	22400562	.	+	.	Parent=Os10t0565700-02
Chr10	irgsp1_rep	five_prime_UTR	22400679	22401066	.	+	.	Parent=Os10t0565700-02
Chr10	irgsp1_rep	five_prime_UTR	22401386	22401510	.	+	.	Parent=Os10t0565700-02
Chr10	irgsp1_rep	five_prime_UTR	22402371	22402670	.	+	.	Parent=Os10t0565700-02
Chr10	irgsp1_rep	CDS	22402671	22402694	.	+	0	Parent=Os10t0565700-02
Chr10	irgsp1_rep	CDS	22408535	22408662	.	+	0	Parent=Os10t0565700-02
Chr10	irgsp1_rep	CDS	22408755	22408806	.	+	1	Parent=Os10t0565700-02
Chr10	irgsp1_rep	CDS	22409492	22409590	.	+	0	Parent=Os10t0565700-02
Chr10	irgsp1_rep	three_prime_UTR	22409591	22409699	.	+	.	Parent=Os10t0565700-02
Chr10	irgsp1_rep	three_prime_UTR	22409784	22409930	.	+	.	Parent=Os10t0565700-02
Chr10	irgsp1_rep	three_prime_UTR	22410023	22410145	.	+	.	Parent=Os10t0565700-02
Chr10	irgsp1_rep	three_prime_UTR	22410227	22410301	.	+	.	Parent=Os10t0565700-02
Chr10	irgsp1_rep	three_prime_UTR	22410391	22410845	.	+	.	Parent=Os10t0565700-02
Chr10	irgsp1_rep	mRNA	22411820	22414518	.	+	.	ID=Os10t0566050-01;Name=Os10t0566050-01;Locus_id=Os10g0566050;Note=Helicase%2C C-terminal domain containing protein.;Transcript_evidence=AK241981 (DDBJ%2C Best hit);ORF_evidence=B8BIA8 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524);InterPro=Helicase%2C C-terminal (IPR001650);NIAS_FLcDNA=J075097L09;TENOR=Os10t0566050-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	22411820	22411985	.	+	.	Parent=Os10t0566050-01
Chr10	irgsp1_rep	CDS	22411986	22411994	.	+	0	Parent=Os10t0566050-01
Chr10	irgsp1_rep	CDS	22412125	22412211	.	+	0	Parent=Os10t0566050-01
Chr10	irgsp1_rep	CDS	22412318	22412436	.	+	0	Parent=Os10t0566050-01
Chr10	irgsp1_rep	CDS	22412509	22412578	.	+	1	Parent=Os10t0566050-01
Chr10	irgsp1_rep	three_prime_UTR	22412579	22412619	.	+	.	Parent=Os10t0566050-01
Chr10	irgsp1_rep	three_prime_UTR	22412694	22412762	.	+	.	Parent=Os10t0566050-01
Chr10	irgsp1_rep	three_prime_UTR	22412841	22412932	.	+	.	Parent=Os10t0566050-01
Chr10	irgsp1_rep	three_prime_UTR	22413044	22413163	.	+	.	Parent=Os10t0566050-01
Chr10	irgsp1_rep	three_prime_UTR	22413304	22413346	.	+	.	Parent=Os10t0566050-01
Chr10	irgsp1_rep	three_prime_UTR	22413427	22413489	.	+	.	Parent=Os10t0566050-01
Chr10	irgsp1_rep	three_prime_UTR	22413565	22413741	.	+	.	Parent=Os10t0566050-01
Chr10	irgsp1_rep	three_prime_UTR	22413826	22414003	.	+	.	Parent=Os10t0566050-01
Chr10	irgsp1_rep	three_prime_UTR	22414087	22414195	.	+	.	Parent=Os10t0566050-01
Chr10	irgsp1_rep	three_prime_UTR	22414294	22414518	.	+	.	Parent=Os10t0566050-01
Chr10	irgsp1_rep	mRNA	22424314	22425029	.	+	.	ID=Os10t0566200-00;Name=Os10t0566200-00;Locus_id=Os10g0566200;Note=Similar to predicted protein.;Transcript_evidence=BT034698 (DDBJ);ORF_evidence=NP_177031.1 (RefSeq);TENOR=Os10t0566200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	22424314	22424397	.	+	0	Parent=Os10t0566200-00
Chr10	irgsp1_rep	CDS	22424501	22424760	.	+	0	Parent=Os10t0566200-00
Chr10	irgsp1_rep	CDS	22424827	22424839	.	+	1	Parent=Os10t0566200-00
Chr10	irgsp1_rep	three_prime_UTR	22424840	22425029	.	+	.	Parent=Os10t0566200-00
Chr10	irgsp1_rep	mRNA	22425678	22427740	.	+	.	ID=Os10t0566300-01;Name=Os10t0566300-01;Locus_id=Os10g0566300;Oryzabase Gene Symbol Synonym(s)=OsFbox561%2C Os_F0014;Oryzabase Gene Name Synonym(s)=F-box protein 561;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK105014 (DDBJ%2C Best hit);ORF_evidence=Q108X5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=001-008-B12;Oryzabase=17330;Expression=AK105014;TENOR=Os10t0566300-01;KEGG=Os10t0566300-01
Chr10	irgsp1_rep	five_prime_UTR	22425678	22425789	.	+	.	Parent=Os10t0566300-01
Chr10	irgsp1_rep	CDS	22425790	22425882	.	+	0	Parent=Os10t0566300-01
Chr10	irgsp1_rep	CDS	22426328	22427572	.	+	0	Parent=Os10t0566300-01
Chr10	irgsp1_rep	three_prime_UTR	22427573	22427740	.	+	.	Parent=Os10t0566300-01
Chr10	irgsp1_rep	mRNA	22435311	22436873	.	+	.	ID=Os10t0566400-01;Name=Os10t0566400-01;Locus_id=Os10g0566400;Note=Similar to RING-H2 finger protein ATL3J.;Transcript_evidence=AK109895 (DDBJ%2C Best hit);ORF_evidence=NP_001151920.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=002-149-F01;TENOR=Os10t0566400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	22435311	22435369	.	+	.	Parent=Os10t0566400-01
Chr10	irgsp1_rep	CDS	22435370	22436485	.	+	0	Parent=Os10t0566400-01
Chr10	irgsp1_rep	three_prime_UTR	22436486	22436873	.	+	.	Parent=Os10t0566400-01
Chr10	irgsp1_rep	mRNA	22453084	22456620	.	+	.	ID=Os10t0566700-00;Name=Os10t0566700-00;Locus_id=Os10g0566700;Note=Chaperonin Cpn10 family protein.;Transcript_evidence=CT837920 (DDBJ%2C Best hit);ORF_evidence=B4FAE4 (UniProt);GO=Biological Process: protein folding (GO:0006457),Cellular Component: cytoplasm (GO:0005737);InterPro=GroES-like (IPR011032),Chaperonin Cpn10 (IPR020818);TENOR=Os10t0566700-00;KEGG=Os10t0566700-00
Chr10	irgsp1_rep	five_prime_UTR	22453084	22453205	.	+	.	Parent=Os10t0566700-00
Chr10	irgsp1_rep	CDS	22453206	22453364	.	+	0	Parent=Os10t0566700-00
Chr10	irgsp1_rep	CDS	22453472	22453522	.	+	0	Parent=Os10t0566700-00
Chr10	irgsp1_rep	CDS	22454590	22454655	.	+	0	Parent=Os10t0566700-00
Chr10	irgsp1_rep	CDS	22454742	22454789	.	+	0	Parent=Os10t0566700-00
Chr10	irgsp1_rep	CDS	22456003	22456032	.	+	0	Parent=Os10t0566700-00
Chr10	irgsp1_rep	CDS	22456230	22456298	.	+	0	Parent=Os10t0566700-00
Chr10	irgsp1_rep	three_prime_UTR	22456299	22456620	.	+	.	Parent=Os10t0566700-00
Chr10	irgsp1_rep	mRNA	22457714	22460760	.	-	.	ID=Os10t0566800-01;Name=Os10t0566800-01;Locus_id=Os10g0566800;Oryzabase Gene Symbol Synonym(s)=prx129;Oryzabase Gene Name Synonym(s)=class III peroxidase 129;Note=Haem peroxidase%2C plant/fungal/bacterial family protein.;Transcript_evidence=AK063299 (DDBJ%2C Best hit);ORF_evidence=Q5U1H3 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793);NIAS_FLcDNA=001-113-F01;Oryzabase=14645;Expression=AK063299;TENOR=Os10t0566800-01;KEGG=Os10t0566800-01
Chr10	irgsp1_rep	five_prime_UTR	22460399	22460760	.	-	.	Parent=Os10t0566800-01
Chr10	irgsp1_rep	CDS	22460129	22460398	.	-	0	Parent=Os10t0566800-01
Chr10	irgsp1_rep	CDS	22459596	22459775	.	-	0	Parent=Os10t0566800-01
Chr10	irgsp1_rep	CDS	22459326	22459488	.	-	0	Parent=Os10t0566800-01
Chr10	irgsp1_rep	CDS	22458092	22458501	.	-	2	Parent=Os10t0566800-01
Chr10	irgsp1_rep	three_prime_UTR	22457714	22458091	.	-	.	Parent=Os10t0566800-01
Chr10	irgsp1_rep	mRNA	22464363	22466552	.	+	.	ID=Os10t0566900-01;Name=Os10t0566900-01;Locus_id=Os10g0566900;Note=Conserved hypothetical protein.;Transcript_evidence=AK101687 (DDBJ%2C Best hit);ORF_evidence=Q8S7D7 (UniProt);NIAS_FLcDNA=J033059A21;Expression=AK101687;TENOR=Os10t0566900-01;KEGG=Os10t0566900-01
Chr10	irgsp1_rep	five_prime_UTR	22464363	22464508	.	+	.	Parent=Os10t0566900-01
Chr10	irgsp1_rep	CDS	22464509	22464640	.	+	0	Parent=Os10t0566900-01
Chr10	irgsp1_rep	CDS	22465111	22465229	.	+	0	Parent=Os10t0566900-01
Chr10	irgsp1_rep	CDS	22465337	22465513	.	+	1	Parent=Os10t0566900-01
Chr10	irgsp1_rep	CDS	22465820	22465867	.	+	1	Parent=Os10t0566900-01
Chr10	irgsp1_rep	CDS	22466027	22466091	.	+	1	Parent=Os10t0566900-01
Chr10	irgsp1_rep	CDS	22466189	22466232	.	+	2	Parent=Os10t0566900-01
Chr10	irgsp1_rep	three_prime_UTR	22466233	22466552	.	+	.	Parent=Os10t0566900-01
Chr10	irgsp1_rep	mRNA	22468996	22471342	.	-	.	ID=Os10t0567000-01;Name=Os10t0567000-01;Locus_id=Os10g0567000;Note=Camphor resistance CrcB protein family protein.;Transcript_evidence=AK103373 (DDBJ%2C Best hit);ORF_evidence=NP_001147074.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Camphor resistance CrcB protein (IPR003691);NIAS_FLcDNA=J033127B07;Expression=AK103373;TENOR=Os10t0567000-01;KEGG=Os10t0567000-01
Chr10	irgsp1_rep	five_prime_UTR	22471331	22471342	.	-	.	Parent=Os10t0567000-01
Chr10	irgsp1_rep	CDS	22470854	22471330	.	-	0	Parent=Os10t0567000-01
Chr10	irgsp1_rep	CDS	22470693	22470770	.	-	0	Parent=Os10t0567000-01
Chr10	irgsp1_rep	CDS	22470488	22470586	.	-	0	Parent=Os10t0567000-01
Chr10	irgsp1_rep	CDS	22470178	22470370	.	-	0	Parent=Os10t0567000-01
Chr10	irgsp1_rep	CDS	22469630	22470063	.	-	2	Parent=Os10t0567000-01
Chr10	irgsp1_rep	CDS	22469300	22469515	.	-	0	Parent=Os10t0567000-01
Chr10	irgsp1_rep	three_prime_UTR	22468996	22469299	.	-	.	Parent=Os10t0567000-01
Chr10	irgsp1_rep	mRNA	22466999	22469138	.	-	.	ID=Os10t0567000-02;Name=Os10t0567000-02;Locus_id=Os10g0567000;Note=Hypothetical gene.;Transcript_evidence=AK287863 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065199P09;TENOR=Os10t0567000-02;KEGG=Os10t0567000-02
Chr10	irgsp1_rep	five_prime_UTR	22468472	22469138	.	-	.	Parent=Os10t0567000-02
Chr10	irgsp1_rep	CDS	22468187	22468471	.	-	0	Parent=Os10t0567000-02
Chr10	irgsp1_rep	three_prime_UTR	22466999	22468186	.	-	.	Parent=Os10t0567000-02
Chr10	irgsp1_rep	mRNA	22473573	22477206	.	-	.	ID=Os10t0567100-01;Name=Os10t0567100-01;Locus_id=Os10g0567100;CGSNL Gene Symbol=CAO2;CGSNL Gene Name=CHLOROPHYLLIDE A OXYGENASE 2;Oryzabase Gene Symbol Synonym(s)=OsCAO2%2C OsCAO%2C CAO;Oryzabase Gene Name Synonym(s)=chlorophyllide a oxygenase 2%2C Chlorophyllide a Oxygenase;Note=Similar to Chlorophyll b synthase (Fragment).;Transcript_evidence=AK063367 (DDBJ%2C Best hit);ORF_evidence=Q8S7E1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: chlorophyllide a oxygenase [overall] activity (GO:0010277),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=Pheophorbide a oxygenase (IPR013626),Rieske [2Fe-2S] iron-sulphur domain (IPR017941);NIAS_FLcDNA=001-114-D11;Oryzabase=6707;Expression=AK063367;TENOR=Os10t0567100-01;KEGG=Os10t0567100-01
Chr10	irgsp1_rep	five_prime_UTR	22477193	22477206	.	-	.	Parent=Os10t0567100-01
Chr10	irgsp1_rep	CDS	22477118	22477192	.	-	0	Parent=Os10t0567100-01
Chr10	irgsp1_rep	CDS	22476471	22476716	.	-	0	Parent=Os10t0567100-01
Chr10	irgsp1_rep	CDS	22476004	22476108	.	-	0	Parent=Os10t0567100-01
Chr10	irgsp1_rep	CDS	22475650	22475928	.	-	0	Parent=Os10t0567100-01
Chr10	irgsp1_rep	CDS	22475419	22475566	.	-	0	Parent=Os10t0567100-01
Chr10	irgsp1_rep	CDS	22474821	22475005	.	-	2	Parent=Os10t0567100-01
Chr10	irgsp1_rep	CDS	22474594	22474706	.	-	0	Parent=Os10t0567100-01
Chr10	irgsp1_rep	CDS	22474211	22474506	.	-	1	Parent=Os10t0567100-01
Chr10	irgsp1_rep	CDS	22473879	22474060	.	-	2	Parent=Os10t0567100-01
Chr10	irgsp1_rep	three_prime_UTR	22473573	22473878	.	-	.	Parent=Os10t0567100-01
Chr10	irgsp1_rep	mRNA	22474235	22477716	.	+	.	ID=Os10t0567200-01;Name=Os10t0567200-01;Locus_id=Os10g0567200;Note=Hypothetical protein.;Transcript_evidence=AK100517 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023100H07;Expression=AK100517;TENOR=Os10t0567200-01;KEGG=Os10t0567200-01
Chr10	irgsp1_rep	five_prime_UTR	22474235	22475487	.	+	.	Parent=Os10t0567200-01
Chr10	irgsp1_rep	CDS	22475488	22475787	.	+	0	Parent=Os10t0567200-01
Chr10	irgsp1_rep	three_prime_UTR	22475788	22476223	.	+	.	Parent=Os10t0567200-01
Chr10	irgsp1_rep	three_prime_UTR	22476483	22476737	.	+	.	Parent=Os10t0567200-01
Chr10	irgsp1_rep	three_prime_UTR	22476975	22477716	.	+	.	Parent=Os10t0567200-01
Chr10	irgsp1_rep	mRNA	22480776	22482620	.	+	.	ID=Os10t0567300-01;Name=Os10t0567300-01;Locus_id=Os10g0567300;Note=SH2 motif domain containing protein.;Transcript_evidence=AK070829 (DDBJ%2C Best hit);ORF_evidence=Q336Q9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: signal transduction (GO:0007165),Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: protein binding (GO:0005515);InterPro=SH2 motif (IPR000980),STAT transcription factor%2C core (IPR001217);NIAS_FLcDNA=J023065P16;TENOR=Os10t0567300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	22480776	22480777	.	+	.	Parent=Os10t0567300-01
Chr10	irgsp1_rep	CDS	22480778	22480996	.	+	0	Parent=Os10t0567300-01
Chr10	irgsp1_rep	CDS	22481085	22481368	.	+	0	Parent=Os10t0567300-01
Chr10	irgsp1_rep	CDS	22481457	22481619	.	+	1	Parent=Os10t0567300-01
Chr10	irgsp1_rep	CDS	22481735	22482081	.	+	0	Parent=Os10t0567300-01
Chr10	irgsp1_rep	CDS	22482158	22482221	.	+	1	Parent=Os10t0567300-01
Chr10	irgsp1_rep	CDS	22482303	22482338	.	+	0	Parent=Os10t0567300-01
Chr10	irgsp1_rep	three_prime_UTR	22482339	22482620	.	+	.	Parent=Os10t0567300-01
Chr10	irgsp1_rep	mRNA	22482935	22486431	.	-	.	ID=Os10t0567400-01;Name=Os10t0567400-01;Locus_id=Os10g0567400;RAP-DB Gene Symbol Synonym(s)=OsCAO1;RAP-DB Gene Name Synonym(s)=chlorophyllide a oxygenase 1;CGSNL Gene Symbol=YGL10;CGSNL Gene Name=YELLOW-GREEN LEAF 10;Oryzabase Gene Symbol Synonym(s)=CAO%2C CAO1%2C OsCAO1%2C Oslls1%2C Lls1%2C DVR%2C PGL;Oryzabase Gene Name Synonym(s)=chlorophyll a oxygenase%2C Chlorophyll a oxygenase 1%2C chlorophyllide a oxygenate 1%2C Lls1-homologue of maize%2C "3%2C8-divinyl chlorophyllide a 8-vinyl reductase"%2C pale green leaf%2C yellow green leaf 10;Note=Chlorophyllide a oxygenase%2C Chlorophyll b synthesis%2C Regulation of photosynthesis%2C Chlorophyll degradation and ROS scavenging%2C Regulation of both natural and induced senescence;Transcript_evidence=AK065124,AK071899;ORF_evidence=Q8S7E1;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: chlorophyllide a oxygenase [overall] activity (GO:0010277),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=Rieske [2Fe-2S] iron-sulphur domain superfamily (IPR036922),Rieske [2Fe-2S] iron-sulphur domain (IPR017941),Pheophorbide a oxygenase (IPR013626),Aromatic-ring-hydroxylating dioxygenase%2C 2Fe-2S-binding site (IPR015881);NIAS_FLcDNA=J013001P04,J013059G06;Manual Curation=September 30%2C 2020;Literature_PMID=32980909;Oryzabase=17956;Expression=AK065124;TENOR=Os10t0567400-01;KEGG=Os10t0567400-01
Chr10	irgsp1_rep	five_prime_UTR	22486372	22486431	.	-	.	Parent=Os10t0567400-01
Chr10	irgsp1_rep	CDS	22486297	22486371	.	-	0	Parent=Os10t0567400-01
Chr10	irgsp1_rep	CDS	22485515	22485757	.	-	0	Parent=Os10t0567400-01
Chr10	irgsp1_rep	CDS	22485236	22485340	.	-	0	Parent=Os10t0567400-01
Chr10	irgsp1_rep	CDS	22484876	22485154	.	-	0	Parent=Os10t0567400-01
Chr10	irgsp1_rep	CDS	22484633	22484780	.	-	0	Parent=Os10t0567400-01
Chr10	irgsp1_rep	CDS	22484308	22484492	.	-	2	Parent=Os10t0567400-01
Chr10	irgsp1_rep	CDS	22484083	22484195	.	-	0	Parent=Os10t0567400-01
Chr10	irgsp1_rep	CDS	22483668	22483962	.	-	1	Parent=Os10t0567400-01
Chr10	irgsp1_rep	CDS	22483333	22483515	.	-	0	Parent=Os10t0567400-01
Chr10	irgsp1_rep	three_prime_UTR	22482935	22483332	.	-	.	Parent=Os10t0567400-01
Chr10	irgsp1_rep	mRNA	22482882	22486292	.	-	.	ID=Os10t0567400-02;Name=Os10t0567400-02;Locus_id=Os10g0567400;CGSNL Gene Symbol=YGL10;CGSNL Gene Name=YELLOW-GREEN LEAF 10;Oryzabase Gene Symbol Synonym(s)=CAO%2C CAO1%2C OsCAO1%2C Oslls1%2C Lls1%2C DVR%2C PGL;Oryzabase Gene Name Synonym(s)=chlorophyll a oxygenase%2C Chlorophyll a oxygenase 1%2C chlorophyllide a oxygenate 1%2C Lls1-homologue of maize%2C "3%2C 8-divinyl chlorophyllide a 8-vinyl reductase"%2C pale green leaf%2C yellow green leaf 10;Note=Similar to Isoform 2 of Chlorophyllide a oxygenase%2C chloroplastic.;Transcript_evidence=AK067730 (DDBJ%2C Best hit);ORF_evidence=Q8S7E1-2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: chlorophyllide a oxygenase [overall] activity (GO:0010277),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=Pheophorbide a oxygenase (IPR013626),Aromatic-ring-hydroxylating dioxygenase%2C 2Fe-2S-binding site (IPR015881),Rieske [2Fe-2S] iron-sulphur domain (IPR017941);NIAS_FLcDNA=J013116K15;Oryzabase=17956;Expression=AK067730;TENOR=Os10t0567400-02;KEGG=Os10t0567400-02
Chr10	irgsp1_rep	five_prime_UTR	22485788	22486292	.	-	.	Parent=Os10t0567400-02
Chr10	irgsp1_rep	CDS	22485515	22485787	.	-	0	Parent=Os10t0567400-02
Chr10	irgsp1_rep	CDS	22485236	22485340	.	-	0	Parent=Os10t0567400-02
Chr10	irgsp1_rep	CDS	22484876	22485154	.	-	0	Parent=Os10t0567400-02
Chr10	irgsp1_rep	CDS	22484633	22484780	.	-	0	Parent=Os10t0567400-02
Chr10	irgsp1_rep	CDS	22484308	22484492	.	-	2	Parent=Os10t0567400-02
Chr10	irgsp1_rep	CDS	22484083	22484195	.	-	0	Parent=Os10t0567400-02
Chr10	irgsp1_rep	CDS	22483668	22483962	.	-	1	Parent=Os10t0567400-02
Chr10	irgsp1_rep	CDS	22483333	22483515	.	-	0	Parent=Os10t0567400-02
Chr10	irgsp1_rep	three_prime_UTR	22482882	22483332	.	-	.	Parent=Os10t0567400-02
Chr10	irgsp1_rep	mRNA	22482910	22484941	.	-	.	ID=Os10t0567400-03;Name=Os10t0567400-03;Locus_id=Os10g0567400;CGSNL Gene Symbol=YGL10;CGSNL Gene Name=YELLOW-GREEN LEAF 10;Oryzabase Gene Symbol Synonym(s)=CAO%2C CAO1%2C OsCAO1%2C Oslls1%2C Lls1%2C DVR%2C PGL;Oryzabase Gene Name Synonym(s)=chlorophyll a oxygenase%2C Chlorophyll a oxygenase 1%2C chlorophyllide a oxygenate 1%2C Lls1-homologue of maize%2C "3%2C 8-divinyl chlorophyllide a 8-vinyl reductase"%2C pale green leaf%2C yellow green leaf 10;Note=Similar to Isoform 2 of Chlorophyllide a oxygenase%2C chloroplastic.;Transcript_evidence=AK062219 (DDBJ%2C Best hit);ORF_evidence=Q8S7E1-2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: chlorophyllide a oxygenase [overall] activity (GO:0010277),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=Pheophorbide a oxygenase (IPR013626),Aromatic-ring-hydroxylating dioxygenase%2C 2Fe-2S-binding site (IPR015881),Rieske [2Fe-2S] iron-sulphur domain (IPR017941);NIAS_FLcDNA=001-047-B05;Oryzabase=17956;Expression=AK062219;TENOR=Os10t0567400-03;KEGG=Os10t0567400-03
Chr10	irgsp1_rep	CDS	22484876	22484941	.	-	0	Parent=Os10t0567400-03
Chr10	irgsp1_rep	CDS	22484633	22484780	.	-	0	Parent=Os10t0567400-03
Chr10	irgsp1_rep	CDS	22484308	22484492	.	-	2	Parent=Os10t0567400-03
Chr10	irgsp1_rep	CDS	22484083	22484195	.	-	0	Parent=Os10t0567400-03
Chr10	irgsp1_rep	CDS	22483668	22483962	.	-	1	Parent=Os10t0567400-03
Chr10	irgsp1_rep	CDS	22483333	22483515	.	-	0	Parent=Os10t0567400-03
Chr10	irgsp1_rep	three_prime_UTR	22482910	22483332	.	-	.	Parent=Os10t0567400-03
Chr10	irgsp1_rep	mRNA	22489255	22492032	.	+	.	ID=Os10t0567500-01;Name=Os10t0567500-01;Locus_id=Os10g0567500;Note=RNA-directed DNA polymerase (reverse transcriptase) domain containing protein.;Transcript_evidence=AK072336 (DDBJ%2C Best hit);ORF_evidence=B6SWF1 (UniProt);GO=Biological Process: RNA-dependent DNA replication (GO:0006278),Biological Process: mRNA processing (GO:0006397),Cellular Component: chloroplast (GO:0009507),Molecular Function: RNA binding (GO:0003723),Molecular Function: RNA-directed DNA polymerase activity (GO:0003964);InterPro=Reverse transcriptase (IPR000477),Maturase%2C MatK (IPR002866);NIAS_FLcDNA=J023044D03;Expression=AK072336;TENOR=Os10t0567500-01;KEGG=Os10t0567500-01
Chr10	irgsp1_rep	five_prime_UTR	22489255	22489291	.	+	.	Parent=Os10t0567500-01
Chr10	irgsp1_rep	CDS	22489292	22491493	.	+	0	Parent=Os10t0567500-01
Chr10	irgsp1_rep	three_prime_UTR	22491494	22492032	.	+	.	Parent=Os10t0567500-01
Chr10	irgsp1_rep	mRNA	22497930	22499180	.	-	.	ID=Os10t0567600-01;Name=Os10t0567600-01;Locus_id=Os10g0567600;Note=Uncharacterised protein family UPF0503 domain containing protein.;Transcript_evidence=AK105119 (DDBJ%2C Best hit);ORF_evidence=Q8S7E3 (UniProt);InterPro=Uncharacterised protein family UPF0503 (IPR008004);NIAS_FLcDNA=001-101-B03;Expression=AK105119;TENOR=Os10t0567600-01;KEGG=Os10t0567600-01
Chr10	irgsp1_rep	five_prime_UTR	22499100	22499180	.	-	.	Parent=Os10t0567600-01
Chr10	irgsp1_rep	CDS	22498221	22499099	.	-	0	Parent=Os10t0567600-01
Chr10	irgsp1_rep	three_prime_UTR	22497930	22498220	.	-	.	Parent=Os10t0567600-01
Chr10	irgsp1_rep	mRNA	22504605	22510131	.	-	.	ID=Os10t0567800-01;Name=Os10t0567800-01;Locus_id=Os10g0567800;Oryzabase Gene Symbol Synonym(s)=OsDRP1C%2C DRP1C%2C OsDRP1D%2C DRP1D;Oryzabase Gene Name Synonym(s)=dynamin-related protein 1C%2C dynamin-related protein 1D;Note=Similar to Dynamin-related protein 1E (Dynamin-like protein E) (Dynamin-like protein 4) (Dynamin-like protein DLP2).;Transcript_evidence=AK073186 (DDBJ%2C Best hit);ORF_evidence=NP_567094.1 (RefSeq);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Dynamin central domain (IPR000375),Dynamin%2C GTPase domain (IPR001401),Dynamin GTPase effector (IPR003130),Dynamin%2C GTPase region%2C conserved site (IPR019762),GTPase effector domain%2C GED (IPR020850),Dynamin (IPR022812);NIAS_FLcDNA=J033007I10;Oryzabase=21597;Expression=AK073186;TENOR=Os10t0567800-01;KEGG=Os10t0567800-01
Chr10	irgsp1_rep	five_prime_UTR	22509972	22510131	.	-	.	Parent=Os10t0567800-01
Chr10	irgsp1_rep	CDS	22509825	22509971	.	-	0	Parent=Os10t0567800-01
Chr10	irgsp1_rep	CDS	22509650	22509713	.	-	0	Parent=Os10t0567800-01
Chr10	irgsp1_rep	CDS	22509452	22509559	.	-	2	Parent=Os10t0567800-01
Chr10	irgsp1_rep	CDS	22508751	22508852	.	-	2	Parent=Os10t0567800-01
Chr10	irgsp1_rep	CDS	22508433	22508483	.	-	2	Parent=Os10t0567800-01
Chr10	irgsp1_rep	CDS	22508279	22508340	.	-	2	Parent=Os10t0567800-01
Chr10	irgsp1_rep	CDS	22507473	22507563	.	-	0	Parent=Os10t0567800-01
Chr10	irgsp1_rep	CDS	22506500	22506564	.	-	2	Parent=Os10t0567800-01
Chr10	irgsp1_rep	CDS	22506220	22506414	.	-	0	Parent=Os10t0567800-01
Chr10	irgsp1_rep	CDS	22506009	22506128	.	-	0	Parent=Os10t0567800-01
Chr10	irgsp1_rep	CDS	22505868	22505938	.	-	0	Parent=Os10t0567800-01
Chr10	irgsp1_rep	CDS	22505543	22505768	.	-	1	Parent=Os10t0567800-01
Chr10	irgsp1_rep	CDS	22505403	22505453	.	-	0	Parent=Os10t0567800-01
Chr10	irgsp1_rep	CDS	22504927	22505301	.	-	0	Parent=Os10t0567800-01
Chr10	irgsp1_rep	CDS	22504728	22504856	.	-	0	Parent=Os10t0567800-01
Chr10	irgsp1_rep	three_prime_UTR	22504605	22504727	.	-	.	Parent=Os10t0567800-01
Chr10	irgsp1_rep	mRNA	22504534	22506316	.	-	.	ID=Os10t0567800-02;Name=Os10t0567800-02;Locus_id=Os10g0567800;Oryzabase Gene Symbol Synonym(s)=OsDRP1C%2C DRP1C%2C OsDRP1D%2C DRP1D;Oryzabase Gene Name Synonym(s)=dynamin-related protein 1C%2C dynamin-related protein 1D;Note=Similar to predicted protein.;Transcript_evidence=AK061703 (DDBJ%2C Best hit);ORF_evidence=NP_567094.1 (RefSeq);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Dynamin central domain (IPR000375),Dynamin GTPase effector (IPR003130),GTPase effector domain%2C GED (IPR020850);NIAS_FLcDNA=001-037-E04;Oryzabase=21597;Expression=AK061703;TENOR=Os10t0567800-02;KEGG=Os10t0567800-02 (EC:3.6.5.5)
Chr10	irgsp1_rep	five_prime_UTR	22506316	22506316	.	-	.	Parent=Os10t0567800-02
Chr10	irgsp1_rep	CDS	22506220	22506315	.	-	0	Parent=Os10t0567800-02
Chr10	irgsp1_rep	CDS	22506009	22506128	.	-	0	Parent=Os10t0567800-02
Chr10	irgsp1_rep	CDS	22505868	22505938	.	-	0	Parent=Os10t0567800-02
Chr10	irgsp1_rep	CDS	22505543	22505768	.	-	1	Parent=Os10t0567800-02
Chr10	irgsp1_rep	CDS	22505403	22505453	.	-	0	Parent=Os10t0567800-02
Chr10	irgsp1_rep	CDS	22504927	22505301	.	-	0	Parent=Os10t0567800-02
Chr10	irgsp1_rep	CDS	22504728	22504856	.	-	0	Parent=Os10t0567800-02
Chr10	irgsp1_rep	three_prime_UTR	22504534	22504727	.	-	.	Parent=Os10t0567800-02
Chr10	irgsp1_rep	mRNA	22504734	22510031	.	+	.	ID=Os10t0567850-00;Name=Os10t0567850-00;Locus_id=Os10g0567850;Note=Hypothetical protein.;Transcript_evidence=tplb0034e16 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0567850-00
Chr10	irgsp1_rep	five_prime_UTR	22504734	22504837	.	+	.	Parent=Os10t0567850-00
Chr10	irgsp1_rep	five_prime_UTR	22504898	22505319	.	+	.	Parent=Os10t0567850-00
Chr10	irgsp1_rep	five_prime_UTR	22505520	22505766	.	+	.	Parent=Os10t0567850-00
Chr10	irgsp1_rep	five_prime_UTR	22505948	22506125	.	+	.	Parent=Os10t0567850-00
Chr10	irgsp1_rep	five_prime_UTR	22506217	22506411	.	+	.	Parent=Os10t0567850-00
Chr10	irgsp1_rep	five_prime_UTR	22506497	22506554	.	+	.	Parent=Os10t0567850-00
Chr10	irgsp1_rep	five_prime_UTR	22507454	22507557	.	+	.	Parent=Os10t0567850-00
Chr10	irgsp1_rep	five_prime_UTR	22508271	22508359	.	+	.	Parent=Os10t0567850-00
Chr10	irgsp1_rep	five_prime_UTR	22508718	22508852	.	+	.	Parent=Os10t0567850-00
Chr10	irgsp1_rep	five_prime_UTR	22509452	22509479	.	+	.	Parent=Os10t0567850-00
Chr10	irgsp1_rep	CDS	22509480	22509606	.	+	0	Parent=Os10t0567850-00
Chr10	irgsp1_rep	CDS	22509810	22510031	.	+	2	Parent=Os10t0567850-00
Chr10	irgsp1_rep	mRNA	22516057	22517963	.	+	.	ID=Os10t0567900-01;Name=Os10t0567900-01;Locus_id=Os10g0567900;Note=Similar to F-box protein interaction domain containing protein%2C expressed.;Transcript_evidence=AK064083 (DDBJ%2C Best hit);ORF_evidence=Q108X5 (UniProt);InterPro=F-box associated interaction domain (IPR017451);NIAS_FLcDNA=002-100-B05;TENOR=Os10t0567900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	22516057	22516633	.	+	.	Parent=Os10t0567900-01
Chr10	irgsp1_rep	five_prime_UTR	22516728	22516923	.	+	.	Parent=Os10t0567900-01
Chr10	irgsp1_rep	CDS	22516924	22517808	.	+	0	Parent=Os10t0567900-01
Chr10	irgsp1_rep	three_prime_UTR	22517809	22517963	.	+	.	Parent=Os10t0567900-01
Chr10	irgsp1_rep	mRNA	22520076	22521575	.	-	.	ID=Os10t0568000-01;Name=Os10t0568000-01;Locus_id=Os10g0568000;Oryzabase Gene Symbol Synonym(s)=Os_F0772;Note=Conserved hypothetical protein.;Transcript_evidence=AK072209 (DDBJ%2C Best hit);ORF_evidence=Q8S7E8 (UniProt);NIAS_FLcDNA=J013165I05;Oryzabase=17543;TENOR=Os10t0568000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	22521575	22521575	.	-	.	Parent=Os10t0568000-01
Chr10	irgsp1_rep	CDS	22520489	22521574	.	-	0	Parent=Os10t0568000-01
Chr10	irgsp1_rep	three_prime_UTR	22520076	22520488	.	-	.	Parent=Os10t0568000-01
Chr10	irgsp1_rep	mRNA	22522025	22524862	.	-	.	ID=Os10t0568100-01;Name=Os10t0568100-01;Locus_id=Os10g0568100;Oryzabase Gene Symbol Synonym(s)=OsSTA248;Note=Domain of unknown function DUF828 domain containing protein.;Transcript_evidence=AK111422 (DDBJ%2C Best hit);ORF_evidence=A2ZAE1 (UniProt);InterPro=Domain of unknown function DUF828 (IPR008546);NIAS_FLcDNA=002-182-G10;Oryzabase=19516;TENOR=Os10t0568100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	22524687	22524862	.	-	.	Parent=Os10t0568100-01
Chr10	irgsp1_rep	CDS	22524510	22524686	.	-	0	Parent=Os10t0568100-01
Chr10	irgsp1_rep	CDS	22523831	22524052	.	-	0	Parent=Os10t0568100-01
Chr10	irgsp1_rep	three_prime_UTR	22523655	22523830	.	-	.	Parent=Os10t0568100-01
Chr10	irgsp1_rep	three_prime_UTR	22523438	22523566	.	-	.	Parent=Os10t0568100-01
Chr10	irgsp1_rep	three_prime_UTR	22523225	22523329	.	-	.	Parent=Os10t0568100-01
Chr10	irgsp1_rep	three_prime_UTR	22522025	22522587	.	-	.	Parent=Os10t0568100-01
Chr10	irgsp1_rep	mRNA	22526937	22532726	.	+	.	ID=Os10t0568200-01;Name=Os10t0568200-01;Locus_id=Os10g0568200;Note=Chaperonin Cpn60/TCP-1 family protein.;Transcript_evidence=AK070073 (DDBJ%2C Best hit);ORF_evidence=B6TSC6 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: cellular protein metabolic process (GO:0044267),Molecular Function: ATP binding (GO:0005524),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Chaperonin Cpn60/TCP-1 (IPR002423),T-complex protein 1%2C epsilon subunit (IPR012718);NIAS_FLcDNA=J023043F15;Expression=AK070073;TENOR=Os10t0568200-01;KEGG=Os10t0568200-01
Chr10	irgsp1_rep	five_prime_UTR	22526937	22527214	.	+	.	Parent=Os10t0568200-01
Chr10	irgsp1_rep	five_prime_UTR	22528215	22528397	.	+	.	Parent=Os10t0568200-01
Chr10	irgsp1_rep	five_prime_UTR	22528702	22529968	.	+	.	Parent=Os10t0568200-01
Chr10	irgsp1_rep	five_prime_UTR	22530089	22530132	.	+	.	Parent=Os10t0568200-01
Chr10	irgsp1_rep	CDS	22530133	22530240	.	+	0	Parent=Os10t0568200-01
Chr10	irgsp1_rep	CDS	22530567	22530737	.	+	0	Parent=Os10t0568200-01
Chr10	irgsp1_rep	three_prime_UTR	22530738	22530762	.	+	.	Parent=Os10t0568200-01
Chr10	irgsp1_rep	three_prime_UTR	22531228	22531693	.	+	.	Parent=Os10t0568200-01
Chr10	irgsp1_rep	three_prime_UTR	22532050	22532222	.	+	.	Parent=Os10t0568200-01
Chr10	irgsp1_rep	three_prime_UTR	22532287	22532726	.	+	.	Parent=Os10t0568200-01
Chr10	irgsp1_rep	mRNA	22527479	22528899	.	+	.	ID=Os10t0568200-02;Name=Os10t0568200-02;Locus_id=Os10g0568200;Note=Hypothetical conserved gene.;Transcript_evidence=AK063744 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=001-120-G02;Expression=AK063744;TENOR=Os10t0568200-02;KEGG=Os10t0568200-02
Chr10	irgsp1_rep	five_prime_UTR	22527479	22527479	.	+	.	Parent=Os10t0568200-02
Chr10	irgsp1_rep	CDS	22527480	22527773	.	+	0	Parent=Os10t0568200-02
Chr10	irgsp1_rep	CDS	22528215	22528232	.	+	0	Parent=Os10t0568200-02
Chr10	irgsp1_rep	three_prime_UTR	22528233	22528899	.	+	.	Parent=Os10t0568200-02
Chr10	irgsp1_rep	mRNA	22529879	22533205	.	+	.	ID=Os10t0568200-03;Name=Os10t0568200-03;Locus_id=Os10g0568200;Note=Conserved hypothetical protein.;Transcript_evidence=AK106739 (DDBJ%2C Best hit);ORF_evidence=B9G737 (UniProt);NIAS_FLcDNA=002-115-B02;TENOR=Os10t0568200-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	22529879	22529968	.	+	.	Parent=Os10t0568200-03
Chr10	irgsp1_rep	five_prime_UTR	22530089	22530240	.	+	.	Parent=Os10t0568200-03
Chr10	irgsp1_rep	five_prime_UTR	22530567	22530762	.	+	.	Parent=Os10t0568200-03
Chr10	irgsp1_rep	five_prime_UTR	22531228	22531611	.	+	.	Parent=Os10t0568200-03
Chr10	irgsp1_rep	CDS	22531612	22531693	.	+	0	Parent=Os10t0568200-03
Chr10	irgsp1_rep	CDS	22532085	22532222	.	+	2	Parent=Os10t0568200-03
Chr10	irgsp1_rep	CDS	22532287	22532744	.	+	2	Parent=Os10t0568200-03
Chr10	irgsp1_rep	three_prime_UTR	22532745	22533205	.	+	.	Parent=Os10t0568200-03
Chr10	irgsp1_rep	mRNA	22531145	22534379	.	-	.	ID=Os10t0568300-01;Name=Os10t0568300-01;Locus_id=Os10g0568300;Note=Hypothetical conserved gene.;Transcript_evidence=AK100013 (DDBJ%2C Best hit);ORF_evidence=Q8S7Q8 (UniProt);InterPro=Domain of unknown function DUF828 (IPR008546);NIAS_FLcDNA=J013142C13;Expression=AK100013;TENOR=Os10t0568300-01;KEGG=Os10t0568300-01
Chr10	irgsp1_rep	five_prime_UTR	22534265	22534379	.	-	.	Parent=Os10t0568300-01
Chr10	irgsp1_rep	CDS	22534190	22534264	.	-	0	Parent=Os10t0568300-01
Chr10	irgsp1_rep	CDS	22533725	22533904	.	-	0	Parent=Os10t0568300-01
Chr10	irgsp1_rep	CDS	22533354	22533476	.	-	0	Parent=Os10t0568300-01
Chr10	irgsp1_rep	CDS	22533128	22533250	.	-	0	Parent=Os10t0568300-01
Chr10	irgsp1_rep	three_prime_UTR	22531145	22533127	.	-	.	Parent=Os10t0568300-01
Chr10	irgsp1_rep	mRNA	22544857	22550187	.	-	.	ID=Os10t0568600-00;Name=Os10t0568600-00;Locus_id=Os10g0568600;Note=Disease resistance protein domain containing protein.;Transcript_evidence=tplb0042l08 (Wheat FLcDNA);ORF_evidence=NP_001065442.2 (RefSeq);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os10t0568600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	22549389	22550187	.	-	.	Parent=Os10t0568600-00
Chr10	irgsp1_rep	five_prime_UTR	22546880	22546904	.	-	.	Parent=Os10t0568600-00
Chr10	irgsp1_rep	CDS	22544858	22546879	.	-	0	Parent=Os10t0568600-00
Chr10	irgsp1_rep	three_prime_UTR	22544857	22544857	.	-	.	Parent=Os10t0568600-00
Chr10	irgsp1_rep	mRNA	22552753	22555040	.	-	.	ID=Os10t0568800-01;Name=Os10t0568800-01;Locus_id=Os10g0568800;Note=Hypothetical protein.;Transcript_evidence=AK288372 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090026F05;TENOR=Os10t0568800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	22553910	22555040	.	-	.	Parent=Os10t0568800-01
Chr10	irgsp1_rep	CDS	22553586	22553909	.	-	0	Parent=Os10t0568800-01
Chr10	irgsp1_rep	three_prime_UTR	22552753	22553585	.	-	.	Parent=Os10t0568800-01
Chr10	irgsp1_rep	mRNA	22555971	22557879	.	+	.	ID=Os10t0568900-01;Name=Os10t0568900-01;Locus_id=Os10g0568900;Note=Similar to Catalytic/ hydrolase.;Transcript_evidence=AK103251 (DDBJ%2C Best hit);ORF_evidence=B6T3S1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Haloacid dehalogenase-like hydrolase (IPR005834),HAD-like domain (IPR023214);NIAS_FLcDNA=J033123M19;TENOR=Os10t0568900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	22555971	22556309	.	+	.	Parent=Os10t0568900-01
Chr10	irgsp1_rep	CDS	22556310	22556507	.	+	0	Parent=Os10t0568900-01
Chr10	irgsp1_rep	CDS	22556619	22556819	.	+	0	Parent=Os10t0568900-01
Chr10	irgsp1_rep	three_prime_UTR	22556820	22557256	.	+	.	Parent=Os10t0568900-01
Chr10	irgsp1_rep	three_prime_UTR	22557405	22557879	.	+	.	Parent=Os10t0568900-01
Chr10	irgsp1_rep	mRNA	22558427	22561875	.	+	.	ID=Os10t0569000-00;Name=Os10t0569000-00;Locus_id=Os10g0569000;Note=Hypothetical conserved gene.;Transcript_evidence=CT835773 (DDBJ%2C Best hit);ORF_evidence=Q8S7Q1 (UniProt);TENOR=Os10t0569000-00;KEGG=Os10t0569000-00
Chr10	irgsp1_rep	five_prime_UTR	22558427	22558428	.	+	.	Parent=Os10t0569000-00
Chr10	irgsp1_rep	CDS	22558429	22558788	.	+	0	Parent=Os10t0569000-00
Chr10	irgsp1_rep	three_prime_UTR	22558789	22558917	.	+	.	Parent=Os10t0569000-00
Chr10	irgsp1_rep	three_prime_UTR	22560953	22561078	.	+	.	Parent=Os10t0569000-00
Chr10	irgsp1_rep	three_prime_UTR	22561548	22561875	.	+	.	Parent=Os10t0569000-00
Chr10	irgsp1_rep	mRNA	22562243	22563068	.	-	.	ID=Os10t0569100-01;Name=Os10t0569100-01;Locus_id=Os10g0569100;Note=PIG-P domain containing protein.;Transcript_evidence=AK059371 (DDBJ%2C Best hit);ORF_evidence=NP_001150876.1 (RefSeq);InterPro=PIG-P (IPR013717);NIAS_FLcDNA=001-026-F01;Expression=AK059371;TENOR=Os10t0569100-01;KEGG=Os10t0569100-01
Chr10	irgsp1_rep	five_prime_UTR	22563049	22563068	.	-	.	Parent=Os10t0569100-01
Chr10	irgsp1_rep	CDS	22562840	22563048	.	-	0	Parent=Os10t0569100-01
Chr10	irgsp1_rep	CDS	22562598	22562717	.	-	1	Parent=Os10t0569100-01
Chr10	irgsp1_rep	CDS	22562504	22562507	.	-	1	Parent=Os10t0569100-01
Chr10	irgsp1_rep	three_prime_UTR	22562243	22562503	.	-	.	Parent=Os10t0569100-01
Chr10	irgsp1_rep	mRNA	22563367	22567751	.	-	.	ID=Os10t0569200-01;Name=Os10t0569200-01;Locus_id=Os10g0569200;CGSNL Gene Symbol=EIF3B;CGSNL Gene Name=EUKARYOTIC INITIATION FACTOR 3B;Oryzabase Gene Symbol Synonym(s)=eIF-3b%2C OseIF3b;Oryzabase Gene Name Synonym(s)="eukaryotic translation initiation factor 3%2C subunit b"%2C Eukaryotic translation initiation factor 3 subunit b;Note=Six-bladed beta-propeller%2C TolB-like domain containing protein.;Transcript_evidence=AK067998 (DDBJ%2C Best hit);ORF_evidence=NP_568498.1 (RefSeq);GO=Biological Process: translational initiation (GO:0006413),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723),Molecular Function: translation initiation factor activity (GO:0003743),Molecular Function: protein binding (GO:0005515);InterPro=RNA recognition motif domain (IPR000504),Translation initiation factor eIF-3b (IPR011400),Nucleotide-binding%2C alpha-beta plait (IPR012677),Translation initiation factor 2A%2C beta propellor-like domain (IPR013979),WD40/YVTN repeat-like-containing domain (IPR015943);NIAS_FLcDNA=J013127N17;Oryzabase=21023;Expression=AK067998;TENOR=Os10t0569200-01;KEGG=Os10t0569200-01
Chr10	irgsp1_rep	five_prime_UTR	22567560	22567751	.	-	.	Parent=Os10t0569200-01
Chr10	irgsp1_rep	CDS	22567438	22567559	.	-	0	Parent=Os10t0569200-01
Chr10	irgsp1_rep	CDS	22566685	22566925	.	-	1	Parent=Os10t0569200-01
Chr10	irgsp1_rep	CDS	22566172	22566318	.	-	0	Parent=Os10t0569200-01
Chr10	irgsp1_rep	CDS	22565916	22566044	.	-	0	Parent=Os10t0569200-01
Chr10	irgsp1_rep	CDS	22565672	22565800	.	-	0	Parent=Os10t0569200-01
Chr10	irgsp1_rep	CDS	22565516	22565599	.	-	0	Parent=Os10t0569200-01
Chr10	irgsp1_rep	CDS	22565320	22565444	.	-	0	Parent=Os10t0569200-01
Chr10	irgsp1_rep	CDS	22565025	22565223	.	-	1	Parent=Os10t0569200-01
Chr10	irgsp1_rep	CDS	22564405	22564937	.	-	0	Parent=Os10t0569200-01
Chr10	irgsp1_rep	CDS	22564027	22564135	.	-	1	Parent=Os10t0569200-01
Chr10	irgsp1_rep	CDS	22563589	22563930	.	-	0	Parent=Os10t0569200-01
Chr10	irgsp1_rep	three_prime_UTR	22563367	22563588	.	-	.	Parent=Os10t0569200-01
Chr10	irgsp1_rep	mRNA	22568902	22573260	.	+	.	ID=Os10t0569300-01;Name=Os10t0569300-01;Locus_id=Os10g0569300;Note=Protein of unknown function DUF248%2C methyltransferase putative family protein.;Transcript_evidence=AK072459 (DDBJ%2C Best hit);ORF_evidence=NP_001152470.1 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Protein of unknown function DUF248%2C methyltransferase putative (IPR004159);NIAS_FLcDNA=J023121D12;Expression=AK072459;TENOR=Os10t0569300-01;KEGG=Os10t0569300-01
Chr10	irgsp1_rep	five_prime_UTR	22568902	22569162	.	+	.	Parent=Os10t0569300-01
Chr10	irgsp1_rep	five_prime_UTR	22570158	22570161	.	+	.	Parent=Os10t0569300-01
Chr10	irgsp1_rep	CDS	22570162	22570803	.	+	0	Parent=Os10t0569300-01
Chr10	irgsp1_rep	CDS	22571072	22571282	.	+	0	Parent=Os10t0569300-01
Chr10	irgsp1_rep	CDS	22571370	22571661	.	+	2	Parent=Os10t0569300-01
Chr10	irgsp1_rep	CDS	22571994	22572359	.	+	1	Parent=Os10t0569300-01
Chr10	irgsp1_rep	CDS	22572457	22572534	.	+	1	Parent=Os10t0569300-01
Chr10	irgsp1_rep	CDS	22572678	22572906	.	+	1	Parent=Os10t0569300-01
Chr10	irgsp1_rep	three_prime_UTR	22572907	22573260	.	+	.	Parent=Os10t0569300-01
Chr10	irgsp1_rep	mRNA	22575212	22576531	.	+	.	ID=Os10t0569400-01;Name=Os10t0569400-01;Locus_id=Os10g0569400;CGSNL Gene Symbol=RIR1B;CGSNL Gene Name=RICE PATHOGEN-RELATED PROTEIN;Oryzabase Gene Symbol Synonym(s)=Rir1b%2C Rir1a%2C OsRALF-28%2C OsRALF28%2C RALF-28%2C RALF28;Oryzabase Gene Name Synonym(s)=Rice pathogen-related protein%2C Rapid alkalization factor 28;Note=RIR1a protein precursor.;Transcript_evidence=AK062449 (DDBJ%2C Best hit);ORF_evidence=O24233 (UniProt);NIAS_FLcDNA=001-103-C01;Oryzabase=6406;Expression=AK062449;TENOR=Os10t0569400-01;KEGG=Os10t0569400-01
Chr10	irgsp1_rep	five_prime_UTR	22575212	22575250	.	+	.	Parent=Os10t0569400-01
Chr10	irgsp1_rep	CDS	22575251	22575377	.	+	0	Parent=Os10t0569400-01
Chr10	irgsp1_rep	CDS	22576067	22576263	.	+	2	Parent=Os10t0569400-01
Chr10	irgsp1_rep	three_prime_UTR	22576264	22576531	.	+	.	Parent=Os10t0569400-01
Chr10	irgsp1_rep	mRNA	22576553	22576728	.	+	.	ID=Os10t0569450-00;Name=Os10t0569450-00;Locus_id=Os10g0569450;Note=Non-protein coding transcript.;Transcript_evidence=EU941709 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0569450-00
Chr10	irgsp1_rep	exon	22576553	22576728	.	+	.	Parent=Os10t0569450-00
Chr10	irgsp1_rep	mRNA	22578871	22579584	.	+	.	ID=Os10t0569500-01;Name=Os10t0569500-01;Locus_id=Os10g0569500;CGSNL Gene Symbol=RALF29;CGSNL Gene Name=RAPID ALKALIZATION FACTOR 29;Oryzabase Gene Symbol Synonym(s)=OsRALF-29%2C OsRALF29%2C RALF-29;Oryzabase Gene Name Synonym(s)=Rapid alkalization factor 29;Note=Conserved hypothetical protein.;Transcript_evidence=AK243487 (DDBJ%2C Best hit);ORF_evidence=NP_001065449.1 (RefSeq);NIAS_FLcDNA=J100073H18;Oryzabase=21131;TENOR=Os10t0569500-01;KEGG=Os10t0569500-01
Chr10	irgsp1_rep	five_prime_UTR	22578871	22578911	.	+	.	Parent=Os10t0569500-01
Chr10	irgsp1_rep	CDS	22578912	22579008	.	+	0	Parent=Os10t0569500-01
Chr10	irgsp1_rep	CDS	22579118	22579251	.	+	2	Parent=Os10t0569500-01
Chr10	irgsp1_rep	three_prime_UTR	22579252	22579584	.	+	.	Parent=Os10t0569500-01
Chr10	irgsp1_rep	mRNA	22582333	22582812	.	+	.	ID=Os10t0569600-00;Name=Os10t0569600-00;Locus_id=Os10g0569600;Note=Similar to RIR1b protein precursor.;Transcript_evidence=ab initio prediction;ORF_evidence=O24232 (UniProt);TENOR=Os10t0569600-00;KEGG=Os10t0569600-00
Chr10	irgsp1_rep	CDS	22582333	22582420	.	+	0	Parent=Os10t0569600-00
Chr10	irgsp1_rep	CDS	22582655	22582812	.	+	2	Parent=Os10t0569600-00
Chr10	irgsp1_rep	mRNA	22587847	22592131	.	+	.	ID=Os10t0569800-00;Name=Os10t0569800-00;Locus_id=Os10g0569800;Oryzabase Gene Symbol Synonym(s)=RIR1b%2C Rir1b%2C OsRALF-30%2C OsRALF30%2C RALF-30%2C RALF30;Oryzabase Gene Name Synonym(s)=Defense-related gene/RIR1b%2C Rapid alkalization factor 30;Note=Similar to RIR1b protein.;Transcript_evidence=CT835789 (DDBJ%2C Best hit);ORF_evidence=O24232 (UniProt);Oryzabase=19084;TENOR=Os10t0569800-00;KEGG=Os10t0569800-00
Chr10	irgsp1_rep	five_prime_UTR	22587847	22587863	.	+	.	Parent=Os10t0569800-00
Chr10	irgsp1_rep	CDS	22587864	22587880	.	+	0	Parent=Os10t0569800-00
Chr10	irgsp1_rep	CDS	22587901	22588028	.	+	1	Parent=Os10t0569800-00
Chr10	irgsp1_rep	CDS	22591730	22591878	.	+	2	Parent=Os10t0569800-00
Chr10	irgsp1_rep	three_prime_UTR	22591879	22592131	.	+	.	Parent=Os10t0569800-00
Chr10	irgsp1_rep	mRNA	22600684	22601326	.	+	.	ID=Os10t0570001-00;Name=Os10t0570001-00;Locus_id=Os10g0570001;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8S7P3 (UniProt);TENOR=Os10t0570001-00
Chr10	irgsp1_rep	CDS	22600684	22600795	.	+	0	Parent=Os10t0570001-00
Chr10	irgsp1_rep	CDS	22601193	22601326	.	+	2	Parent=Os10t0570001-00
Chr10	irgsp1_rep	mRNA	22607642	22608671	.	+	.	ID=Os10t0570200-01;Name=Os10t0570200-01;Locus_id=Os10g0570200;Note=Similar to RIR1b protein precursor.;Transcript_evidence=AK063193 (DDBJ%2C Best hit);ORF_evidence=B8AHC7 (UniProt);NIAS_FLcDNA=001-112-B12;Expression=AK063193;TENOR=Os10t0570200-01;KEGG=Os10t0570200-01
Chr10	irgsp1_rep	five_prime_UTR	22607642	22607706	.	+	.	Parent=Os10t0570200-01
Chr10	irgsp1_rep	CDS	22607707	22607830	.	+	0	Parent=Os10t0570200-01
Chr10	irgsp1_rep	CDS	22608356	22608474	.	+	2	Parent=Os10t0570200-01
Chr10	irgsp1_rep	three_prime_UTR	22608475	22608671	.	+	.	Parent=Os10t0570200-01
Chr10	irgsp1_rep	mRNA	22627963	22628853	.	+	.	ID=Os10t0570700-00;Name=Os10t0570700-00;Locus_id=Os10g0570700;Note=Ribosome-inactivating protein family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G746 (UniProt);GO=Biological Process: negative regulation of translation (GO:0017148),Molecular Function: rRNA N-glycosylase activity (GO:0030598);InterPro=Ribosome-inactivating protein (IPR001574),Ribosome-inactivating protein%2C subdomain 1 (IPR016138);TENOR=Os10t0570700-00;KEGG=Os10t0570700-00
Chr10	irgsp1_rep	CDS	22627963	22628853	.	+	0	Parent=Os10t0570700-00
Chr10	irgsp1_rep	mRNA	22629803	22631252	.	-	.	ID=Os10t0570800-00;Name=Os10t0570800-00;Locus_id=Os10g0570800;Note=Hypothetical conserved gene.;Transcript_evidence=EU947469 (DDBJ);ORF_evidence=Q8S7N9 (UniProt);TENOR=Os10t0570800-00;KEGG=Os10t0570800-00
Chr10	irgsp1_rep	CDS	22631183	22631252	.	-	0	Parent=Os10t0570800-00
Chr10	irgsp1_rep	CDS	22630844	22630963	.	-	2	Parent=Os10t0570800-00
Chr10	irgsp1_rep	CDS	22629803	22630083	.	-	2	Parent=Os10t0570800-00
Chr10	irgsp1_rep	mRNA	22636085	22640104	.	+	.	ID=Os10t0571100-01;Name=Os10t0571100-01;Locus_id=Os10g0571100;Note=Protein of unknown function DUF498 domain containing protein.;Transcript_evidence=AK070664 (DDBJ%2C Best hit);ORF_evidence=Q8S7N7 (UniProt);InterPro=NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 (IPR007523);NIAS_FLcDNA=J023056O15;Expression=AK070664;TENOR=Os10t0571100-01;KEGG=Os10t0571100-01
Chr10	irgsp1_rep	five_prime_UTR	22636085	22636160	.	+	.	Parent=Os10t0571100-01
Chr10	irgsp1_rep	CDS	22636161	22636273	.	+	0	Parent=Os10t0571100-01
Chr10	irgsp1_rep	CDS	22636374	22636445	.	+	1	Parent=Os10t0571100-01
Chr10	irgsp1_rep	CDS	22638421	22638537	.	+	1	Parent=Os10t0571100-01
Chr10	irgsp1_rep	CDS	22638639	22638702	.	+	1	Parent=Os10t0571100-01
Chr10	irgsp1_rep	three_prime_UTR	22638703	22640104	.	+	.	Parent=Os10t0571100-01
Chr10	irgsp1_rep	mRNA	22640923	22646792	.	+	.	ID=Os10t0571200-01;Name=Os10t0571200-01;Locus_id=Os10g0571200;Oryzabase Gene Name Synonym(s)=Pyruvate kinase isozyme G;Note=Similar to Pyruvate kinase isozyme G%2C chloroplast (EC 2.7.1.40) (Fragment).;Transcript_evidence=AK120979 (DDBJ%2C Best hit);ORF_evidence=B8BIC8 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyruvate kinase activity (GO:0004743),Molecular Function: potassium ion binding (GO:0030955);InterPro=Pyruvate kinase (IPR001697),Pyruvate kinase-like%2C insert domain (IPR011037),Pyruvate kinase%2C barrel (IPR015793),Pyruvate kinase%2C alpha/beta (IPR015794),Pyruvate kinase%2C C-terminal (IPR015795),Pyruvate kinase%2C beta-barrel insert domain (IPR015806),Pyruvate/Phosphoenolpyruvate kinase (IPR015813),Pyruvate kinase%2C active site (IPR018209);NIAS_FLcDNA=J023041P05;Oryzabase=12454;Expression=AK120979;TENOR=Os10t0571200-01;KEGG=Os10t0571200-01 (EC:2.7.1.40)
Chr10	irgsp1_rep	five_prime_UTR	22640923	22641007	.	+	.	Parent=Os10t0571200-01
Chr10	irgsp1_rep	CDS	22641008	22641214	.	+	0	Parent=Os10t0571200-01
Chr10	irgsp1_rep	CDS	22641798	22642061	.	+	0	Parent=Os10t0571200-01
Chr10	irgsp1_rep	CDS	22642138	22642303	.	+	0	Parent=Os10t0571200-01
Chr10	irgsp1_rep	CDS	22642435	22642569	.	+	2	Parent=Os10t0571200-01
Chr10	irgsp1_rep	CDS	22642647	22642757	.	+	2	Parent=Os10t0571200-01
Chr10	irgsp1_rep	CDS	22642850	22642938	.	+	2	Parent=Os10t0571200-01
Chr10	irgsp1_rep	CDS	22643216	22643278	.	+	0	Parent=Os10t0571200-01
Chr10	irgsp1_rep	CDS	22643440	22643615	.	+	0	Parent=Os10t0571200-01
Chr10	irgsp1_rep	CDS	22643764	22643866	.	+	1	Parent=Os10t0571200-01
Chr10	irgsp1_rep	CDS	22644265	22644440	.	+	0	Parent=Os10t0571200-01
Chr10	irgsp1_rep	CDS	22644604	22644712	.	+	1	Parent=Os10t0571200-01
Chr10	irgsp1_rep	CDS	22644830	22644943	.	+	0	Parent=Os10t0571200-01
Chr10	irgsp1_rep	three_prime_UTR	22644944	22646792	.	+	.	Parent=Os10t0571200-01
Chr10	irgsp1_rep	mRNA	22642186	22645197	.	+	.	ID=Os10t0571200-02;Name=Os10t0571200-02;Locus_id=Os10g0571200;Oryzabase Gene Name Synonym(s)=Pyruvate kinase isozyme G;Note=Similar to Pyruvate kinase.;Transcript_evidence=AK103375 (DDBJ%2C Best hit);ORF_evidence=B8BIC8 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyruvate kinase activity (GO:0004743),Molecular Function: potassium ion binding (GO:0030955);InterPro=Pyruvate kinase (IPR001697),Pyruvate kinase%2C barrel (IPR015793),Pyruvate kinase%2C alpha/beta (IPR015794),Pyruvate kinase%2C C-terminal (IPR015795),Pyruvate kinase%2C beta-barrel insert domain (IPR015806),Pyruvate/Phosphoenolpyruvate kinase (IPR015813),Pyruvate kinase%2C active site (IPR018209);NIAS_FLcDNA=J033127B21;Oryzabase=12454;Expression=AK103375;TENOR=Os10t0571200-02;KEGG=Os10t0571200-02 (EC:2.7.1.40)
Chr10	irgsp1_rep	CDS	22642186	22642303	.	+	0	Parent=Os10t0571200-02
Chr10	irgsp1_rep	CDS	22642435	22642569	.	+	2	Parent=Os10t0571200-02
Chr10	irgsp1_rep	CDS	22642647	22642757	.	+	2	Parent=Os10t0571200-02
Chr10	irgsp1_rep	CDS	22642850	22642938	.	+	2	Parent=Os10t0571200-02
Chr10	irgsp1_rep	CDS	22643216	22643278	.	+	0	Parent=Os10t0571200-02
Chr10	irgsp1_rep	CDS	22643440	22643615	.	+	0	Parent=Os10t0571200-02
Chr10	irgsp1_rep	CDS	22643764	22643866	.	+	1	Parent=Os10t0571200-02
Chr10	irgsp1_rep	CDS	22644265	22644440	.	+	0	Parent=Os10t0571200-02
Chr10	irgsp1_rep	CDS	22644604	22644712	.	+	1	Parent=Os10t0571200-02
Chr10	irgsp1_rep	CDS	22644830	22644943	.	+	0	Parent=Os10t0571200-02
Chr10	irgsp1_rep	three_prime_UTR	22644944	22645197	.	+	.	Parent=Os10t0571200-02
Chr10	irgsp1_rep	mRNA	22641215	22641267	.	-	.	ID=Os10t0571250-00;Name=Os10t0571250-00;Locus_id=Os10g0571250;Note=Non-protein coding transcript.;Transcript_evidence=EU950639 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0571250-00
Chr10	irgsp1_rep	exon	22641215	22641267	.	-	.	Parent=Os10t0571250-00
Chr10	irgsp1_rep	mRNA	22650009	22654233	.	+	.	ID=Os10t0571300-01;Name=Os10t0571300-01;Locus_id=Os10g0571300;CGSNL Gene Symbol=RLCK308;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 308;Oryzabase Gene Symbol Synonym(s)=OsRLCK308%2C OsBSK2%2C BSK2;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 308%2C BR-signaling kinase 2%2C brassinosteroid-signaling kinase 2%2C brassinosteroid-SIGNALING KINASE 2;Note=Similar to Protein kinase-like protein.;Transcript_evidence=AK107462 (DDBJ%2C Best hit);ORF_evidence=B9G748 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-129-A06;Oryzabase=18981;Expression=AK107462;TENOR=Os10t0571300-01;KEGG=Os10t0571300-01
Chr10	irgsp1_rep	five_prime_UTR	22650009	22650188	.	+	.	Parent=Os10t0571300-01
Chr10	irgsp1_rep	CDS	22650189	22650279	.	+	0	Parent=Os10t0571300-01
Chr10	irgsp1_rep	CDS	22650391	22650662	.	+	2	Parent=Os10t0571300-01
Chr10	irgsp1_rep	CDS	22650759	22650894	.	+	0	Parent=Os10t0571300-01
Chr10	irgsp1_rep	CDS	22651207	22651340	.	+	2	Parent=Os10t0571300-01
Chr10	irgsp1_rep	CDS	22651529	22651634	.	+	0	Parent=Os10t0571300-01
Chr10	irgsp1_rep	CDS	22651808	22651893	.	+	2	Parent=Os10t0571300-01
Chr10	irgsp1_rep	CDS	22652283	22652471	.	+	0	Parent=Os10t0571300-01
Chr10	irgsp1_rep	CDS	22652559	22652717	.	+	0	Parent=Os10t0571300-01
Chr10	irgsp1_rep	CDS	22653062	22653175	.	+	0	Parent=Os10t0571300-01
Chr10	irgsp1_rep	CDS	22653462	22653713	.	+	0	Parent=Os10t0571300-01
Chr10	irgsp1_rep	three_prime_UTR	22653714	22654233	.	+	.	Parent=Os10t0571300-01
Chr10	irgsp1_rep	mRNA	22670628	22671819	.	+	.	ID=Os10t0571600-01;Name=Os10t0571600-01;Locus_id=Os10g0571600;CGSNL Gene Symbol=NAC121;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 121;Oryzabase Gene Symbol Synonym(s)=ONAC121;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 121;Note=No apical meristem (NAM) protein domain containing protein.;Transcript_evidence=AK110684 (DDBJ%2C Best hit);ORF_evidence=XP_002329572.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=002-169-H07;Oryzabase=15882;Expression=AK110684;TENOR=Os10t0571600-01;KEGG=Os10t0571600-01
Chr10	irgsp1_rep	five_prime_UTR	22670628	22670629	.	+	.	Parent=Os10t0571600-01
Chr10	irgsp1_rep	CDS	22670630	22670869	.	+	0	Parent=Os10t0571600-01
Chr10	irgsp1_rep	CDS	22670958	22671512	.	+	0	Parent=Os10t0571600-01
Chr10	irgsp1_rep	three_prime_UTR	22671513	22671819	.	+	.	Parent=Os10t0571600-01
Chr10	irgsp1_rep	mRNA	22677765	22679745	.	-	.	ID=Os10t0571900-00;Name=Os10t0571900-00;Locus_id=Os10g0571900;Note=Similar to Malic enzyme (Fragment).;Transcript_evidence=CT835758 (DDBJ%2C Best hit);ORF_evidence=Q53RP5 (UniProt);InterPro=FAR1 DNA binding domain (IPR004330);TENOR=Os10t0571900-00
Chr10	irgsp1_rep	five_prime_UTR	22679432	22679745	.	-	.	Parent=Os10t0571900-00
Chr10	irgsp1_rep	five_prime_UTR	22679284	22679352	.	-	.	Parent=Os10t0571900-00
Chr10	irgsp1_rep	CDS	22679270	22679283	.	-	0	Parent=Os10t0571900-00
Chr10	irgsp1_rep	CDS	22677765	22678549	.	-	1	Parent=Os10t0571900-00
Chr10	irgsp1_rep	mRNA	22680088	22682204	.	+	.	ID=Os10t0572000-00;Name=Os10t0572000-00;Locus_id=Os10g0572000;Note=GTP-binding protein%2C HSR1-related domain containing protein.;Transcript_evidence=BT038521 (DDBJ);ORF_evidence=NP_192803.4 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=GTP-binding domain%2C HSR1-related (IPR002917),GTP-binding protein%2C orthogonal bundle domain (IPR023179);TENOR=Os10t0572000-00;KEGG=Os10t0572000-00
Chr10	irgsp1_rep	CDS	22680088	22680243	.	+	0	Parent=Os10t0572000-00
Chr10	irgsp1_rep	CDS	22680353	22680463	.	+	0	Parent=Os10t0572000-00
Chr10	irgsp1_rep	CDS	22680591	22680668	.	+	0	Parent=Os10t0572000-00
Chr10	irgsp1_rep	CDS	22680753	22680900	.	+	0	Parent=Os10t0572000-00
Chr10	irgsp1_rep	CDS	22680986	22681056	.	+	2	Parent=Os10t0572000-00
Chr10	irgsp1_rep	CDS	22681409	22681505	.	+	0	Parent=Os10t0572000-00
Chr10	irgsp1_rep	CDS	22681582	22681769	.	+	2	Parent=Os10t0572000-00
Chr10	irgsp1_rep	CDS	22681939	22682202	.	+	0	Parent=Os10t0572000-00
Chr10	irgsp1_rep	three_prime_UTR	22682203	22682204	.	+	.	Parent=Os10t0572000-00
Chr10	irgsp1_rep	mRNA	22682292	22684755	.	-	.	ID=Os10t0572100-01;Name=Os10t0572100-01;Locus_id=Os10g0572100;CGSNL Gene Symbol=ALMT2;CGSNL Gene Name=ALUMINUM-ACTIVATED MALATE TRANSPORTER 2;Oryzabase Gene Symbol Synonym(s)=OsALMT2;Oryzabase Gene Name Synonym(s)=Aluminum-activated malate transporter 2;Note=Uncharacterised protein family UPF0005 domain containing protein.;Transcript_evidence=AK073002 (DDBJ%2C Best hit),AK105742 (DDBJ%2C Best hit);ORF_evidence=O49696 (UniProt);GO=Biological Process: response to aluminum ion (GO:0010044);InterPro=Malate transporter%2C aliminium toerance (IPR020966);NIAS_FLcDNA=J023150J20,001-202-B02;Oryzabase=22151;Expression=AK073002;TENOR=Os10t0572100-01;KEGG=Os10t0572100-01
Chr10	irgsp1_rep	five_prime_UTR	22684669	22684755	.	-	.	Parent=Os10t0572100-01
Chr10	irgsp1_rep	CDS	22684395	22684668	.	-	0	Parent=Os10t0572100-01
Chr10	irgsp1_rep	CDS	22684125	22684265	.	-	2	Parent=Os10t0572100-01
Chr10	irgsp1_rep	CDS	22683773	22684045	.	-	2	Parent=Os10t0572100-01
Chr10	irgsp1_rep	CDS	22683544	22683671	.	-	2	Parent=Os10t0572100-01
Chr10	irgsp1_rep	CDS	22683284	22683427	.	-	0	Parent=Os10t0572100-01
Chr10	irgsp1_rep	CDS	22682505	22683134	.	-	0	Parent=Os10t0572100-01
Chr10	irgsp1_rep	three_prime_UTR	22682292	22682504	.	-	.	Parent=Os10t0572100-01
Chr10	irgsp1_rep	mRNA	22690792	22695147	.	+	.	ID=Os10t0572300-01;Name=Os10t0572300-01;Locus_id=Os10g0572300;Oryzabase Gene Symbol Synonym(s)=OsIRL5;Oryzabase Gene Name Synonym(s)=intracellular Ras-group-related LRR protein 5;Note=Leucine-rich repeat%2C typical subtype containing protein.;Transcript_evidence=AK102709 (DDBJ%2C Best hit);ORF_evidence=B6SVK6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591);NIAS_FLcDNA=J033104H23;Oryzabase=14435;Expression=AK102709;TENOR=Os10t0572300-01;KEGG=Os10t0572300-01
Chr10	irgsp1_rep	five_prime_UTR	22690792	22690844	.	+	.	Parent=Os10t0572300-01
Chr10	irgsp1_rep	CDS	22690845	22691421	.	+	0	Parent=Os10t0572300-01
Chr10	irgsp1_rep	CDS	22692403	22693316	.	+	2	Parent=Os10t0572300-01
Chr10	irgsp1_rep	CDS	22693405	22693545	.	+	0	Parent=Os10t0572300-01
Chr10	irgsp1_rep	three_prime_UTR	22693546	22693588	.	+	.	Parent=Os10t0572300-01
Chr10	irgsp1_rep	three_prime_UTR	22694040	22694124	.	+	.	Parent=Os10t0572300-01
Chr10	irgsp1_rep	three_prime_UTR	22694863	22695147	.	+	.	Parent=Os10t0572300-01
Chr10	irgsp1_rep	mRNA	22691246	22693784	.	+	.	ID=Os10t0572300-02;Name=Os10t0572300-02;Locus_id=Os10g0572300;Oryzabase Gene Symbol Synonym(s)=OsIRL5;Oryzabase Gene Name Synonym(s)=intracellular Ras-group-related LRR protein 5;Note=Similar to Protein lap4.;Transcript_evidence=AK065479 (DDBJ%2C Best hit);ORF_evidence=B6SVK6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591);NIAS_FLcDNA=J013025D12;Oryzabase=14435;TENOR=Os10t0572300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	22691246	22691246	.	+	.	Parent=Os10t0572300-02
Chr10	irgsp1_rep	CDS	22691247	22691421	.	+	0	Parent=Os10t0572300-02
Chr10	irgsp1_rep	CDS	22692403	22693316	.	+	2	Parent=Os10t0572300-02
Chr10	irgsp1_rep	CDS	22693405	22693545	.	+	0	Parent=Os10t0572300-02
Chr10	irgsp1_rep	three_prime_UTR	22693546	22693784	.	+	.	Parent=Os10t0572300-02
Chr10	irgsp1_rep	mRNA	22699144	22699865	.	-	.	ID=Os10t0572400-01;Name=Os10t0572400-01;Locus_id=Os10g0572400;CGSNL Gene Symbol=DLN242;CGSNL Gene Name=DLN REPRESSOR 242;Oryzabase Gene Symbol Synonym(s)=OsDLN242%2C OsDLN242a%2C OsDLN242b%2C DLN242a%2C DLN242b;Oryzabase Gene Name Synonym(s)=DLN repressor 242%2C DLN motif protein 242;Note=Conserved hypothetical protein.;Transcript_evidence=AK062550 (DDBJ%2C Best hit);ORF_evidence=Q8S7M6 (UniProt);NIAS_FLcDNA=001-104-G12;Oryzabase=23234;TENOR=Os10t0572400-01;KEGG=Os10t0572400-01
Chr10	irgsp1_rep	CDS	22699386	22699865	.	-	0	Parent=Os10t0572400-01
Chr10	irgsp1_rep	three_prime_UTR	22699144	22699385	.	-	.	Parent=Os10t0572400-01
Chr10	irgsp1_rep	mRNA	22702383	22707110	.	-	.	ID=Os10t0572500-01;Name=Os10t0572500-01;Locus_id=Os10g0572500;CGSNL Gene Symbol=DLN242;CGSNL Gene Name=DLN REPRESSOR 242;Oryzabase Gene Symbol Synonym(s)=OsDLN242%2C OsDLN242a%2C OsDLN242b%2C DLN242a%2C DLN242b;Oryzabase Gene Name Synonym(s)=DLN repressor 242%2C DLN motif protein 242;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK067954 (DDBJ%2C Best hit);ORF_evidence=Q108W5 (UniProt);InterPro=Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J013128J21;Oryzabase=23234;TENOR=Os10t0572500-01
Chr10	irgsp1_rep	five_prime_UTR	22706851	22707110	.	-	.	Parent=Os10t0572500-01
Chr10	irgsp1_rep	CDS	22706776	22706850	.	-	0	Parent=Os10t0572500-01
Chr10	irgsp1_rep	CDS	22706231	22706305	.	-	0	Parent=Os10t0572500-01
Chr10	irgsp1_rep	CDS	22704443	22705552	.	-	0	Parent=Os10t0572500-01
Chr10	irgsp1_rep	CDS	22703632	22703717	.	-	0	Parent=Os10t0572500-01
Chr10	irgsp1_rep	CDS	22702383	22703195	.	-	1	Parent=Os10t0572500-01
Chr10	irgsp1_rep	mRNA	22743920	22745288	.	-	.	ID=Os10t0572900-01;Name=Os10t0572900-01;Locus_id=Os10g0572900;Note=Similar to AT-hook protein 1.;Transcript_evidence=AK108363 (DDBJ%2C Best hit);ORF_evidence=NP_001148458.1 (RefSeq);NIAS_FLcDNA=002-142-C12;Expression=AK108363;TENOR=Os10t0572900-01;KEGG=Os10t0572900-01
Chr10	irgsp1_rep	five_prime_UTR	22745236	22745288	.	-	.	Parent=Os10t0572900-01
Chr10	irgsp1_rep	CDS	22745191	22745235	.	-	0	Parent=Os10t0572900-01
Chr10	irgsp1_rep	CDS	22744692	22744968	.	-	0	Parent=Os10t0572900-01
Chr10	irgsp1_rep	CDS	22744247	22744587	.	-	2	Parent=Os10t0572900-01
Chr10	irgsp1_rep	three_prime_UTR	22743920	22744246	.	-	.	Parent=Os10t0572900-01
Chr10	irgsp1_rep	mRNA	22741649	22744775	.	-	.	ID=Os10t0572900-02;Name=Os10t0572900-02;Locus_id=Os10g0572900;Note=Protein of unknown function DUF296 domain containing protein.;Transcript_evidence=AK102506 (DDBJ%2C Best hit);ORF_evidence=NP_001148458.1 (RefSeq);InterPro=Domain of unknown function DUF296 (IPR005175);NIAS_FLcDNA=J033095F12;Expression=AK102506;TENOR=Os10t0572900-02;KEGG=Os10t0572900-02
Chr10	irgsp1_rep	five_prime_UTR	22744774	22744775	.	-	.	Parent=Os10t0572900-02
Chr10	irgsp1_rep	CDS	22744692	22744773	.	-	0	Parent=Os10t0572900-02
Chr10	irgsp1_rep	CDS	22744535	22744587	.	-	2	Parent=Os10t0572900-02
Chr10	irgsp1_rep	CDS	22743158	22743289	.	-	0	Parent=Os10t0572900-02
Chr10	irgsp1_rep	CDS	22742458	22742619	.	-	0	Parent=Os10t0572900-02
Chr10	irgsp1_rep	CDS	22742030	22742356	.	-	0	Parent=Os10t0572900-02
Chr10	irgsp1_rep	three_prime_UTR	22741649	22742029	.	-	.	Parent=Os10t0572900-02
Chr10	irgsp1_rep	mRNA	22741639	22743782	.	-	.	ID=Os10t0572900-03;Name=Os10t0572900-03;Locus_id=Os10g0572900;Note=Similar to AT-hook protein 1.;Transcript_evidence=AK058588 (DDBJ%2C Best hit);ORF_evidence=NP_001148458.1 (RefSeq);InterPro=Domain of unknown function DUF296 (IPR005175);NIAS_FLcDNA=001-017-G04;Expression=AK058588;TENOR=Os10t0572900-03;KEGG=Os10t0572900-03
Chr10	irgsp1_rep	five_prime_UTR	22743293	22743782	.	-	.	Parent=Os10t0572900-03
Chr10	irgsp1_rep	CDS	22743158	22743292	.	-	0	Parent=Os10t0572900-03
Chr10	irgsp1_rep	CDS	22742458	22742619	.	-	0	Parent=Os10t0572900-03
Chr10	irgsp1_rep	CDS	22742030	22742356	.	-	0	Parent=Os10t0572900-03
Chr10	irgsp1_rep	three_prime_UTR	22741639	22742029	.	-	.	Parent=Os10t0572900-03
Chr10	irgsp1_rep	mRNA	22744922	22745186	.	+	.	ID=Os10t0572950-00;Name=Os10t0572950-00;Locus_id=Os10g0572950;Note=Hypothetical protein.;Transcript_evidence=EU959880 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0572950-00
Chr10	irgsp1_rep	five_prime_UTR	22744922	22744922	.	+	.	Parent=Os10t0572950-00
Chr10	irgsp1_rep	CDS	22744923	22745186	.	+	0	Parent=Os10t0572950-00
Chr10	irgsp1_rep	mRNA	22750258	22753043	.	+	.	ID=Os10t0573000-01;Name=Os10t0573000-01;Locus_id=Os10g0573000;RAP-DB Gene Symbol Synonym(s)=PFKB1;RAP-DB Gene Name Synonym(s)=Phosphofructokinase B-type 1;CGSNL Gene Symbol=REY(K2);CGSNL Gene Name=REVERTIBLE EARLY YELLOWING KITAAKE 2;Oryzabase Gene Symbol Synonym(s)=OsPFKB1%2C PFKB1;Oryzabase Gene Name Synonym(s)=revertible early yellowing Kitaake 2%2C Phosphofructokinase B-type 1;Note=Phosphofructokinase B-type carbohydrate kinase family protein%2C Regulation of early chloroplast development;Transcript_evidence=AK072743;ORF_evidence=Q7XBZ0;GO=Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Ribokinase-like (IPR029056),Carbohydrate kinase PfkB (IPR011611),Carbohydrate/puine kinase%2C PfkB%2C conserved site (IPR002173);NIAS_FLcDNA=J023136M20;Manual Curation=January 23%2C 2020;Literature_PMID=31779907;Oryzabase=23437;Expression=AK072743;TENOR=Os10t0573000-01;KEGG=Os10t0573000-01;Subcellular location=chloroplast (GO:0009507) [mainly], nucleus (GO:0005634)
Chr10	irgsp1_rep	five_prime_UTR	22750258	22750307	.	+	.	Parent=Os10t0573000-01
Chr10	irgsp1_rep	CDS	22750308	22750637	.	+	0	Parent=Os10t0573000-01
Chr10	irgsp1_rep	CDS	22751012	22751277	.	+	0	Parent=Os10t0573000-01
Chr10	irgsp1_rep	CDS	22751390	22751507	.	+	1	Parent=Os10t0573000-01
Chr10	irgsp1_rep	CDS	22751821	22752029	.	+	0	Parent=Os10t0573000-01
Chr10	irgsp1_rep	CDS	22752276	22752729	.	+	1	Parent=Os10t0573000-01
Chr10	irgsp1_rep	three_prime_UTR	22752730	22753043	.	+	.	Parent=Os10t0573000-01
Chr10	irgsp1_rep	mRNA	22754171	22756604	.	+	.	ID=Os10t0573100-01;Name=Os10t0573100-01;Locus_id=Os10g0573100;Note=Similar to AMMECR1 family.;Transcript_evidence=AK069018 (DDBJ%2C Best hit);ORF_evidence=XP_002881612.1 (RefSeq);InterPro=AMMECR1 domain (IPR002733),AMMECR1 (IPR023473);NIAS_FLcDNA=J023001I03;TENOR=Os10t0573100-01;B5toI1=Exon-intron structures and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	22754171	22754263	.	+	.	Parent=Os10t0573100-01
Chr10	irgsp1_rep	CDS	22754264	22754367	.	+	0	Parent=Os10t0573100-01
Chr10	irgsp1_rep	CDS	22755087	22755206	.	+	1	Parent=Os10t0573100-01
Chr10	irgsp1_rep	CDS	22755381	22755495	.	+	1	Parent=Os10t0573100-01
Chr10	irgsp1_rep	CDS	22755562	22755655	.	+	0	Parent=Os10t0573100-01
Chr10	irgsp1_rep	CDS	22756118	22756338	.	+	2	Parent=Os10t0573100-01
Chr10	irgsp1_rep	three_prime_UTR	22756339	22756604	.	+	.	Parent=Os10t0573100-01
Chr10	irgsp1_rep	mRNA	22759376	22761111	.	-	.	ID=Os10t0573300-00;Name=Os10t0573300-00;Locus_id=Os10g0573300;Note=Conserved hypothetical protein.;Transcript_evidence=EU968896 (DDBJ);ORF_evidence=NP_001176284.1 (RefSeq);TENOR=Os10t0573300-00
Chr10	irgsp1_rep	CDS	22760767	22761111	.	-	0	Parent=Os10t0573300-00
Chr10	irgsp1_rep	CDS	22760609	22760695	.	-	0	Parent=Os10t0573300-00
Chr10	irgsp1_rep	CDS	22759376	22759516	.	-	0	Parent=Os10t0573300-00
Chr10	irgsp1_rep	mRNA	22766332	22767420	.	+	.	ID=Os10t0573400-01;Name=Os10t0573400-01;Locus_id=Os10g0573400;CGSNL Gene Symbol=PYL/RCAR10;CGSNL Gene Name=PYRABACTIN RESISTANCE 1 LIKE/REGULATORY COMPONENTS OF ABA RECEPTOR 10;Oryzabase Gene Symbol Synonym(s)=OsPYL/RCAR10%2C PYL10%2C OsPYL10%2C OsPYL1%2C PYL1;Oryzabase Gene Name Synonym(s)=pyrabactin resistance-like 10%2C PYR1-like 1%2C pyrabactin resistance 1-like 1;Note=Similar to Cyclase/dehydrase family protein.;Transcript_evidence=AK061525 (DDBJ%2C Best hit);ORF_evidence=B6TBJ0 (UniProt);InterPro=Polyketide cyclase/dehydrase (IPR019587),START-like domain (IPR023393);NIAS_FLcDNA=006-310-C11;Oryzabase=17877;Expression=AK061525;TENOR=Os10t0573400-01;KEGG=Os10t0573400-01
Chr10	irgsp1_rep	five_prime_UTR	22766332	22766465	.	+	.	Parent=Os10t0573400-01
Chr10	irgsp1_rep	CDS	22766466	22767104	.	+	0	Parent=Os10t0573400-01
Chr10	irgsp1_rep	three_prime_UTR	22767105	22767420	.	+	.	Parent=Os10t0573400-01
Chr10	irgsp1_rep	mRNA	22774959	22777294	.	-	.	ID=Os10t0573700-01;Name=Os10t0573700-01;Locus_id=Os10g0573700;Note=Similar to Mitochondrial carnitine/acylcarnitine carrier-like protein (A BOUT DE SOUFFLE) (Carnitine/acylcarnitine translocase-like protein) (CAC-like protein).;Transcript_evidence=AK072102 (DDBJ%2C Best hit),AK099409 (DDBJ%2C Best hit);ORF_evidence=Q9AYL3 (UniProt);InterPro=Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J013114C17,J013003D17;TENOR=Os10t0573700-01
Chr10	irgsp1_rep	five_prime_UTR	22777181	22777294	.	-	.	Parent=Os10t0573700-01
Chr10	irgsp1_rep	five_prime_UTR	22776809	22776816	.	-	.	Parent=Os10t0573700-01
Chr10	irgsp1_rep	CDS	22776417	22776808	.	-	0	Parent=Os10t0573700-01
Chr10	irgsp1_rep	CDS	22775115	22775673	.	-	1	Parent=Os10t0573700-01
Chr10	irgsp1_rep	three_prime_UTR	22774959	22775114	.	-	.	Parent=Os10t0573700-01
Chr10	irgsp1_rep	mRNA	22774961	22777267	.	-	.	ID=Os10t0573700-02;Name=Os10t0573700-02;Locus_id=Os10g0573700;Note=Similar to Mitochondrial carnitine/acylcarnitine carrier-like protein (A BOUT DE SOUFFLE) (Carnitine/acylcarnitine translocase-like protein) (CAC-like protein).;Transcript_evidence=AK103988 (DDBJ%2C Best hit);ORF_evidence=Q9AYL3 (UniProt);InterPro=Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=001-018-A08;TENOR=Os10t0573700-02
Chr10	irgsp1_rep	five_prime_UTR	22777181	22777267	.	-	.	Parent=Os10t0573700-02
Chr10	irgsp1_rep	five_prime_UTR	22776809	22776816	.	-	.	Parent=Os10t0573700-02
Chr10	irgsp1_rep	CDS	22776417	22776808	.	-	0	Parent=Os10t0573700-02
Chr10	irgsp1_rep	CDS	22775115	22775673	.	-	1	Parent=Os10t0573700-02
Chr10	irgsp1_rep	three_prime_UTR	22774961	22775114	.	-	.	Parent=Os10t0573700-02
Chr10	irgsp1_rep	mRNA	22777651	22780305	.	-	.	ID=Os10t0573800-01;Name=Os10t0573800-01;Locus_id=Os10g0573800;Note=Mitochondrial carnitine/acylcarnitine carrier-like protein (A BOUT DE SOUFFLE) (Carnitine/acylcarnitine translocase-like protein) (CAC-like protein).;Transcript_evidence=AK241496 (DDBJ%2C Best hit);ORF_evidence=B1N662 (UniProt);InterPro=Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J065167G16;TENOR=Os10t0573800-01;KEGG=Os10t0573800-01
Chr10	irgsp1_rep	five_prime_UTR	22780067	22780305	.	-	.	Parent=Os10t0573800-01
Chr10	irgsp1_rep	five_prime_UTR	22779958	22779969	.	-	.	Parent=Os10t0573800-01
Chr10	irgsp1_rep	CDS	22779566	22779957	.	-	0	Parent=Os10t0573800-01
Chr10	irgsp1_rep	CDS	22777853	22778351	.	-	1	Parent=Os10t0573800-01
Chr10	irgsp1_rep	three_prime_UTR	22777651	22777852	.	-	.	Parent=Os10t0573800-01
Chr10	irgsp1_rep	mRNA	22782354	22784358	.	-	.	ID=Os10t0573900-01;Name=Os10t0573900-01;Locus_id=Os10g0573900;RAP-DB Gene Symbol Synonym(s)=OsNMD3;RAP-DB Gene Name Synonym(s)=60S ribosomal subunit nuclear export adaptor NMD3;Oryzabase Gene Symbol Synonym(s)=OsNMD3%2C NMD3;Oryzabase Gene Name Synonym(s)=60S ribosomal subunit nuclear export adaptor NMD3;Note=60S ribosomal subunit nuclear export adaptor%2C Ribosome assembly%2C Maintenance of normal protein synthesis efficiency%2C Plant development;Transcript_evidence=AK101216,AK060642;ORF_evidence=Q336P7;InterPro=Nmd3%2C N-terminal (IPR007064);NIAS_FLcDNA=J033031B21,001-027-F06;Manual Curation=July 27%2C 2020;Literature_PMID=24723395;Oryzabase=18094;Expression=AK101216;TENOR=Os10t0573900-01;KEGG=Os10t0573900-01;Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737)
Chr10	irgsp1_rep	five_prime_UTR	22784312	22784358	.	-	.	Parent=Os10t0573900-01
Chr10	irgsp1_rep	CDS	22782740	22784311	.	-	0	Parent=Os10t0573900-01
Chr10	irgsp1_rep	three_prime_UTR	22782354	22782739	.	-	.	Parent=Os10t0573900-01
Chr10	irgsp1_rep	mRNA	22781929	22783390	.	-	.	ID=Os10t0573900-03;Name=Os10t0573900-03;Locus_id=Os10g0573900;Oryzabase Gene Symbol Synonym(s)=OsNMD3%2C NMD3;Oryzabase Gene Name Synonym(s)=60S ribosomal subunit nuclear export adaptor NMD3;Note=Similar to Nonsense-mediated mRNA decay protein 3.;Transcript_evidence=AK073206 (DDBJ%2C Best hit);ORF_evidence=B6SSZ8 (UniProt);NIAS_FLcDNA=J033004L13;Oryzabase=18094;Expression=AK073206;TENOR=Os10t0573900-03;KEGG=Os10t0573900-03
Chr10	irgsp1_rep	CDS	22782740	22783390	.	-	0	Parent=Os10t0573900-03
Chr10	irgsp1_rep	three_prime_UTR	22781929	22782739	.	-	.	Parent=Os10t0573900-03
Chr10	irgsp1_rep	mRNA	22813743	22818693	.	-	.	ID=Os10t0574150-00;Name=Os10t0574150-00;Locus_id=Os10g0574150;Note=Hypothetical protein.;Transcript_evidence=BT064098 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0574150-00
Chr10	irgsp1_rep	five_prime_UTR	22818530	22818693	.	-	.	Parent=Os10t0574150-00
Chr10	irgsp1_rep	CDS	22818410	22818529	.	-	0	Parent=Os10t0574150-00
Chr10	irgsp1_rep	CDS	22813743	22814121	.	-	0	Parent=Os10t0574150-00
Chr10	irgsp1_rep	mRNA	22818070	22819033	.	+	.	ID=Os10t0574400-01;Name=Os10t0574400-01;Locus_id=Os10g0574400;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=AK059974 (DDBJ%2C Best hit);ORF_evidence=Q9AYK4 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=006-212-A04;TENOR=Os10t0574400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	22818070	22818071	.	+	.	Parent=Os10t0574400-01
Chr10	irgsp1_rep	CDS	22818072	22818671	.	+	0	Parent=Os10t0574400-01
Chr10	irgsp1_rep	three_prime_UTR	22818672	22819033	.	+	.	Parent=Os10t0574400-01
Chr10	irgsp1_rep	mRNA	22819400	22822941	.	-	.	ID=Os10t0574500-00;Name=Os10t0574500-00;Locus_id=Os10g0574500;Note=DNA polymerase III%2C clamp loader complex%2C gamma/delta/delta subunit%2C C-terminal domain containing protein.;Transcript_evidence=AK367004 (DDBJ);ORF_evidence=B9G756 (UniProt);GO=Biological Process: DNA replication (GO:0006260),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=DNA polymerase III%2C clamp loader complex%2C gamma/delta/delta subunit%2C C-terminal (IPR008921),DNA polymerase III%2C clamp-loader complex%2C subunit E%2C C-terminal (IPR019483);TENOR=Os10t0574500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	22822754	22822941	.	-	.	Parent=Os10t0574500-00
Chr10	irgsp1_rep	CDS	22822142	22822753	.	-	0	Parent=Os10t0574500-00
Chr10	irgsp1_rep	CDS	22821922	22822032	.	-	0	Parent=Os10t0574500-00
Chr10	irgsp1_rep	CDS	22821794	22821826	.	-	0	Parent=Os10t0574500-00
Chr10	irgsp1_rep	CDS	22821512	22821674	.	-	0	Parent=Os10t0574500-00
Chr10	irgsp1_rep	CDS	22821122	22821300	.	-	2	Parent=Os10t0574500-00
Chr10	irgsp1_rep	CDS	22820910	22821046	.	-	0	Parent=Os10t0574500-00
Chr10	irgsp1_rep	CDS	22820195	22820290	.	-	1	Parent=Os10t0574500-00
Chr10	irgsp1_rep	CDS	22820020	22820089	.	-	1	Parent=Os10t0574500-00
Chr10	irgsp1_rep	CDS	22819846	22819926	.	-	0	Parent=Os10t0574500-00
Chr10	irgsp1_rep	CDS	22819668	22819730	.	-	0	Parent=Os10t0574500-00
Chr10	irgsp1_rep	three_prime_UTR	22819599	22819667	.	-	.	Parent=Os10t0574500-00
Chr10	irgsp1_rep	three_prime_UTR	22819400	22819475	.	-	.	Parent=Os10t0574500-00
Chr10	irgsp1_rep	mRNA	22829592	22831346	.	-	.	ID=Os10t0574700-01;Name=Os10t0574700-01;Locus_id=Os10g0574700;Note=Protein of unknown function DUF597 family protein.;Transcript_evidence=AK240807 (DDBJ%2C Best hit);ORF_evidence=NP_001065476.1 (RefSeq);InterPro=Protein of unknown function DUF597 (IPR006734);NIAS_FLcDNA=J065006H13;TENOR=Os10t0574700-01;KEGG=Os10t0574700-01
Chr10	irgsp1_rep	five_prime_UTR	22831204	22831346	.	-	.	Parent=Os10t0574700-01
Chr10	irgsp1_rep	CDS	22831144	22831203	.	-	0	Parent=Os10t0574700-01
Chr10	irgsp1_rep	CDS	22830435	22830677	.	-	0	Parent=Os10t0574700-01
Chr10	irgsp1_rep	CDS	22829880	22830341	.	-	0	Parent=Os10t0574700-01
Chr10	irgsp1_rep	three_prime_UTR	22829592	22829879	.	-	.	Parent=Os10t0574700-01
Chr10	irgsp1_rep	mRNA	22829719	22831617	.	+	.	ID=Os10t0574750-01;Name=Os10t0574750-01;Locus_id=Os10g0574750;Note=Hypothetical gene.;Transcript_evidence=AK288662 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090057O16;TENOR=Os10t0574750-01;KEGG=Os10t0574750-01
Chr10	irgsp1_rep	five_prime_UTR	22829719	22829892	.	+	.	Parent=Os10t0574750-01
Chr10	irgsp1_rep	CDS	22829893	22830378	.	+	0	Parent=Os10t0574750-01
Chr10	irgsp1_rep	three_prime_UTR	22830379	22831617	.	+	.	Parent=Os10t0574750-01
Chr10	irgsp1_rep	mRNA	22836686	22840718	.	-	.	ID=Os10t0574800-01;Name=Os10t0574800-01;Locus_id=Os10g0574800;Note=Similar to ARF GAP-like zinc finger-containing protein ZIGA2 (Fragment).;Transcript_evidence=AK072719 (DDBJ%2C Best hit);ORF_evidence=NP_001149824.1 (RefSeq);GO=Biological Process: regulation of ARF GTPase activity (GO:0032312),Molecular Function: ARF GTPase activator activity (GO:0008060),Molecular Function: zinc ion binding (GO:0008270);InterPro=Arf GTPase activating protein (IPR001164);NIAS_FLcDNA=J023138B10;Expression=AK072719;TENOR=Os10t0574800-01;KEGG=Os10t0574800-01
Chr10	irgsp1_rep	five_prime_UTR	22840576	22840718	.	-	.	Parent=Os10t0574800-01
Chr10	irgsp1_rep	CDS	22840495	22840575	.	-	0	Parent=Os10t0574800-01
Chr10	irgsp1_rep	CDS	22840148	22840266	.	-	0	Parent=Os10t0574800-01
Chr10	irgsp1_rep	CDS	22838928	22839357	.	-	1	Parent=Os10t0574800-01
Chr10	irgsp1_rep	CDS	22838478	22838738	.	-	0	Parent=Os10t0574800-01
Chr10	irgsp1_rep	CDS	22837603	22837725	.	-	0	Parent=Os10t0574800-01
Chr10	irgsp1_rep	CDS	22837207	22837308	.	-	0	Parent=Os10t0574800-01
Chr10	irgsp1_rep	CDS	22837027	22837134	.	-	0	Parent=Os10t0574800-01
Chr10	irgsp1_rep	three_prime_UTR	22836686	22837026	.	-	.	Parent=Os10t0574800-01
Chr10	irgsp1_rep	mRNA	22851353	22852517	.	-	.	ID=Os10t0574901-01;Name=Os10t0574901-01;Locus_id=Os10g0574901;Note=Conserved hypothetical protein.;Transcript_evidence=AK242660 (DDBJ%2C Best hit);ORF_evidence=Q33B86 (UniProt);NIAS_FLcDNA=J090027P17;TENOR=Os10t0574901-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	22852252	22852517	.	-	.	Parent=Os10t0574901-01
Chr10	irgsp1_rep	CDS	22852030	22852251	.	-	0	Parent=Os10t0574901-01
Chr10	irgsp1_rep	three_prime_UTR	22851353	22852029	.	-	.	Parent=Os10t0574901-01
Chr10	irgsp1_rep	mRNA	22857127	22859748	.	+	.	ID=Os10t0575000-01;Name=Os10t0575000-01;Locus_id=Os10g0575000;RAP-DB Gene Symbol Synonym(s)=OsbHLH009%2C OsMYC2;RAP-DB Gene Name Synonym(s)=basic helix-loop-helix protein 009;Oryzabase Gene Symbol Synonym(s)=OsbHLH009%2C bHLH009%2C OsMYC2%2C MYC2;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 009%2C Myelocytomatosis oncogene transcription factor 2;Note=JAZ-interacting transcription factor%2C Positive regulator of jasmonate (JA) signaling pathway%2C Bacterial blight resistance%2C  Spikelet development;Transcript_evidence=AK288082;ORF_evidence=Q336P5;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor MYC/MYB N-terminal (IPR025610),Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);NIAS_FLcDNA=J075172G09;Manual Curation=July 12%2C 2016;Literature_PMID=27335352,24647160;Oryzabase=15303;TENOR=Os10t0575000-01;KEGG=Os10t0575000-01
Chr10	irgsp1_rep	five_prime_UTR	22857127	22857278	.	+	.	Parent=Os10t0575000-01
Chr10	irgsp1_rep	CDS	22857279	22859378	.	+	0	Parent=Os10t0575000-01
Chr10	irgsp1_rep	three_prime_UTR	22859379	22859748	.	+	.	Parent=Os10t0575000-01
Chr10	irgsp1_rep	mRNA	22857142	22859565	.	-	.	ID=Os10t0575100-00;Name=Os10t0575100-00;Locus_id=Os10g0575100;Note=Hypothetical protein.;Transcript_evidence=tplb0031i18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0575100-00
Chr10	irgsp1_rep	five_prime_UTR	22859244	22859565	.	-	.	Parent=Os10t0575100-00
Chr10	irgsp1_rep	CDS	22858419	22859243	.	-	0	Parent=Os10t0575100-00
Chr10	irgsp1_rep	three_prime_UTR	22857458	22858418	.	-	.	Parent=Os10t0575100-00
Chr10	irgsp1_rep	three_prime_UTR	22857142	22857400	.	-	.	Parent=Os10t0575100-00
Chr10	irgsp1_rep	mRNA	22861455	22871156	.	-	.	ID=Os10t0575200-01;Name=Os10t0575200-01;Locus_id=Os10g0575200;Oryzabase Gene Symbol Synonym(s)=OsDjC74;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C74;Note=Similar to GRV2 (GRAVITROPISM DEFECTIVE 2)%3B binding / heat shock protein binding.;Transcript_evidence=AK100015 (DDBJ%2C Best hit);ORF_evidence=NP_001118395.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: heat shock protein binding (GO:0031072);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013142N08;Oryzabase=12231;TENOR=Os10t0575200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	22871155	22871156	.	-	.	Parent=Os10t0575200-01
Chr10	irgsp1_rep	CDS	22870474	22871154	.	-	0	Parent=Os10t0575200-01
Chr10	irgsp1_rep	CDS	22869825	22870187	.	-	0	Parent=Os10t0575200-01
Chr10	irgsp1_rep	CDS	22869581	22869721	.	-	0	Parent=Os10t0575200-01
Chr10	irgsp1_rep	CDS	22868644	22869036	.	-	0	Parent=Os10t0575200-01
Chr10	irgsp1_rep	CDS	22868052	22868543	.	-	0	Parent=Os10t0575200-01
Chr10	irgsp1_rep	CDS	22867591	22867814	.	-	0	Parent=Os10t0575200-01
Chr10	irgsp1_rep	CDS	22867151	22867495	.	-	1	Parent=Os10t0575200-01
Chr10	irgsp1_rep	CDS	22866740	22867031	.	-	1	Parent=Os10t0575200-01
Chr10	irgsp1_rep	CDS	22865472	22865921	.	-	0	Parent=Os10t0575200-01
Chr10	irgsp1_rep	CDS	22865041	22865386	.	-	0	Parent=Os10t0575200-01
Chr10	irgsp1_rep	CDS	22864337	22864680	.	-	2	Parent=Os10t0575200-01
Chr10	irgsp1_rep	CDS	22863795	22864256	.	-	0	Parent=Os10t0575200-01
Chr10	irgsp1_rep	CDS	22863173	22863297	.	-	0	Parent=Os10t0575200-01
Chr10	irgsp1_rep	CDS	22862697	22862820	.	-	1	Parent=Os10t0575200-01
Chr10	irgsp1_rep	CDS	22862159	22862227	.	-	0	Parent=Os10t0575200-01
Chr10	irgsp1_rep	CDS	22861795	22862022	.	-	0	Parent=Os10t0575200-01
Chr10	irgsp1_rep	three_prime_UTR	22861455	22861794	.	-	.	Parent=Os10t0575200-01
Chr10	irgsp1_rep	mRNA	22863194	22868326	.	-	.	ID=Os10t0575200-02;Name=Os10t0575200-02;Locus_id=Os10g0575200;Oryzabase Gene Symbol Synonym(s)=OsDjC74;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C74;Note=Similar to GRV2 (KATAMARI2)%3B binding / heat shock protein binding.;Transcript_evidence=AK066761 (DDBJ%2C Best hit);ORF_evidence=NP_001118395.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: heat shock protein binding (GO:0031072);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013074H19;Oryzabase=12231;TENOR=Os10t0575200-02
Chr10	irgsp1_rep	five_prime_UTR	22868325	22868326	.	-	.	Parent=Os10t0575200-02
Chr10	irgsp1_rep	CDS	22868052	22868324	.	-	0	Parent=Os10t0575200-02
Chr10	irgsp1_rep	CDS	22867591	22867814	.	-	0	Parent=Os10t0575200-02
Chr10	irgsp1_rep	CDS	22867151	22867495	.	-	1	Parent=Os10t0575200-02
Chr10	irgsp1_rep	CDS	22866740	22867031	.	-	1	Parent=Os10t0575200-02
Chr10	irgsp1_rep	CDS	22865472	22865921	.	-	0	Parent=Os10t0575200-02
Chr10	irgsp1_rep	CDS	22865041	22865386	.	-	0	Parent=Os10t0575200-02
Chr10	irgsp1_rep	CDS	22864337	22864680	.	-	2	Parent=Os10t0575200-02
Chr10	irgsp1_rep	CDS	22863795	22864256	.	-	0	Parent=Os10t0575200-02
Chr10	irgsp1_rep	CDS	22863194	22863297	.	-	0	Parent=Os10t0575200-02
Chr10	irgsp1_rep	mRNA	22861455	22865778	.	-	.	ID=Os10t0575200-03;Name=Os10t0575200-03;Locus_id=Os10g0575200;Oryzabase Gene Symbol Synonym(s)=OsDjC74;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C74;Note=Similar to GRV2 (KATAMARI2)%3B binding / heat shock protein binding.;Transcript_evidence=AK068812 (DDBJ%2C Best hit);ORF_evidence=NP_001118395.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013159D22;Oryzabase=12231;Expression=AK068812;TENOR=Os10t0575200-03;KEGG=Os10t0575200-03
Chr10	irgsp1_rep	five_prime_UTR	22865778	22865778	.	-	.	Parent=Os10t0575200-03
Chr10	irgsp1_rep	CDS	22865472	22865777	.	-	0	Parent=Os10t0575200-03
Chr10	irgsp1_rep	CDS	22865041	22865386	.	-	0	Parent=Os10t0575200-03
Chr10	irgsp1_rep	CDS	22864337	22864680	.	-	2	Parent=Os10t0575200-03
Chr10	irgsp1_rep	CDS	22863795	22864256	.	-	0	Parent=Os10t0575200-03
Chr10	irgsp1_rep	CDS	22863173	22863297	.	-	0	Parent=Os10t0575200-03
Chr10	irgsp1_rep	CDS	22862697	22862820	.	-	1	Parent=Os10t0575200-03
Chr10	irgsp1_rep	CDS	22862159	22862227	.	-	0	Parent=Os10t0575200-03
Chr10	irgsp1_rep	CDS	22861795	22862022	.	-	0	Parent=Os10t0575200-03
Chr10	irgsp1_rep	three_prime_UTR	22861455	22861794	.	-	.	Parent=Os10t0575200-03
Chr10	irgsp1_rep	mRNA	22879072	22879752	.	-	.	ID=Os10t0575401-00;Name=Os10t0575401-00;Locus_id=Os10g0575401;Note=VQ domain containing protein.;Transcript_evidence=BT042864 (DDBJ);ORF_evidence=NP_188465.1 (RefSeq);InterPro=VQ (IPR008889);TENOR=Os10t0575401-00;KEGG=Os10t0575401-00
Chr10	irgsp1_rep	CDS	22879072	22879752	.	-	0	Parent=Os10t0575401-00
Chr10	irgsp1_rep	mRNA	22910470	22916203	.	-	.	ID=Os10t0575600-01;Name=Os10t0575600-01;Locus_id=Os10g0575600;CGSNL Gene Symbol=ROC3;CGSNL Gene Name=RICE OUTMOST CELL-SPECIFIC GENE 3;Oryzabase Gene Symbol Synonym(s)=Roc3(t)%2C Roc3%2C GL2-3;Oryzabase Gene Name Synonym(s)=Rice outmost cell-specific gene 3(t)%2C Rice outermost cell-specific gene-3%2C Homeobox-leucine zipper protein ROC3%2C Homeodomain transcription factor ROC3%2C HD-ZIP protein ROC3%2C Protein RICE OUTERMOST CELL-SPECIFIC 3%2C GLABR 2-like homeobox protein 3;Note=Homeodomain-related containing protein.;Transcript_evidence=AK071939 (DDBJ%2C Best hit);ORF_evidence=Q336P2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),Lipid-binding START (IPR002913),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Homeobox%2C conserved site (IPR017970),START-like domain (IPR023393);NIAS_FLcDNA=J013087I01;Oryzabase=2864;Expression=AK071939;TENOR=Os10t0575600-01;KEGG=Os10t0575600-01
Chr10	irgsp1_rep	five_prime_UTR	22915977	22916203	.	-	.	Parent=Os10t0575600-01
Chr10	irgsp1_rep	five_prime_UTR	22915688	22915774	.	-	.	Parent=Os10t0575600-01
Chr10	irgsp1_rep	CDS	22915502	22915687	.	-	0	Parent=Os10t0575600-01
Chr10	irgsp1_rep	CDS	22915153	22915418	.	-	0	Parent=Os10t0575600-01
Chr10	irgsp1_rep	CDS	22914905	22915022	.	-	1	Parent=Os10t0575600-01
Chr10	irgsp1_rep	CDS	22914612	22914800	.	-	0	Parent=Os10t0575600-01
Chr10	irgsp1_rep	CDS	22914001	22914525	.	-	0	Parent=Os10t0575600-01
Chr10	irgsp1_rep	CDS	22913800	22913907	.	-	0	Parent=Os10t0575600-01
Chr10	irgsp1_rep	CDS	22913484	22913699	.	-	0	Parent=Os10t0575600-01
Chr10	irgsp1_rep	CDS	22913238	22913412	.	-	0	Parent=Os10t0575600-01
Chr10	irgsp1_rep	CDS	22912819	22913087	.	-	2	Parent=Os10t0575600-01
Chr10	irgsp1_rep	CDS	22912622	22912717	.	-	0	Parent=Os10t0575600-01
Chr10	irgsp1_rep	CDS	22911248	22911748	.	-	0	Parent=Os10t0575600-01
Chr10	irgsp1_rep	three_prime_UTR	22910470	22911247	.	-	.	Parent=Os10t0575600-01
Chr10	irgsp1_rep	mRNA	22912932	22914213	.	+	.	ID=Os10t0575650-00;Name=Os10t0575650-00;Locus_id=Os10g0575650;Note=Hypothetical gene.;Transcript_evidence=BT086509 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0575650-00;KEGG=Os10t0575650-00
Chr10	irgsp1_rep	five_prime_UTR	22912932	22913011	.	+	.	Parent=Os10t0575650-00
Chr10	irgsp1_rep	CDS	22913012	22913089	.	+	0	Parent=Os10t0575650-00
Chr10	irgsp1_rep	CDS	22913245	22913410	.	+	0	Parent=Os10t0575650-00
Chr10	irgsp1_rep	CDS	22913482	22913710	.	+	2	Parent=Os10t0575650-00
Chr10	irgsp1_rep	CDS	22913811	22913907	.	+	1	Parent=Os10t0575650-00
Chr10	irgsp1_rep	CDS	22914001	22914213	.	+	0	Parent=Os10t0575650-00
Chr10	irgsp1_rep	mRNA	22920532	22922802	.	+	.	ID=Os10t0575700-00;Name=Os10t0575700-00;Locus_id=Os10g0575700;Note=Similar to plastid-lipid associated protein 3.;Transcript_evidence=EU962877 (DDBJ);ORF_evidence=NP_001149315.1 (RefSeq);GO=Cellular Component: chloroplast (GO:0009507),Molecular Function: structural molecule activity (GO:0005198);InterPro=Plastid lipid-associated protein/fibrillin conserved domain (IPR006843);TENOR=Os10t0575700-00;KEGG=Os10t0575700-00
Chr10	irgsp1_rep	CDS	22920532	22921142	.	+	0	Parent=Os10t0575700-00
Chr10	irgsp1_rep	CDS	22921418	22921613	.	+	1	Parent=Os10t0575700-00
Chr10	irgsp1_rep	CDS	22922483	22922800	.	+	0	Parent=Os10t0575700-00
Chr10	irgsp1_rep	three_prime_UTR	22922801	22922802	.	+	.	Parent=Os10t0575700-00
Chr10	irgsp1_rep	mRNA	22922968	22932833	.	-	.	ID=Os10t0575800-01;Name=Os10t0575800-01;Locus_id=Os10g0575800;Note=Conserved hypothetical protein.;Transcript_evidence=AK120242 (DDBJ%2C Best hit);ORF_evidence=Q8W3I1 (UniProt);NIAS_FLcDNA=J013044G09;TENOR=Os10t0575800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	22932681	22932833	.	-	.	Parent=Os10t0575800-01
Chr10	irgsp1_rep	CDS	22932469	22932680	.	-	0	Parent=Os10t0575800-01
Chr10	irgsp1_rep	CDS	22932190	22932352	.	-	1	Parent=Os10t0575800-01
Chr10	irgsp1_rep	CDS	22931588	22931896	.	-	0	Parent=Os10t0575800-01
Chr10	irgsp1_rep	CDS	22931432	22931488	.	-	0	Parent=Os10t0575800-01
Chr10	irgsp1_rep	three_prime_UTR	22931406	22931431	.	-	.	Parent=Os10t0575800-01
Chr10	irgsp1_rep	three_prime_UTR	22930432	22930878	.	-	.	Parent=Os10t0575800-01
Chr10	irgsp1_rep	three_prime_UTR	22930228	22930335	.	-	.	Parent=Os10t0575800-01
Chr10	irgsp1_rep	three_prime_UTR	22930004	22930144	.	-	.	Parent=Os10t0575800-01
Chr10	irgsp1_rep	three_prime_UTR	22929792	22929924	.	-	.	Parent=Os10t0575800-01
Chr10	irgsp1_rep	three_prime_UTR	22929356	22929719	.	-	.	Parent=Os10t0575800-01
Chr10	irgsp1_rep	three_prime_UTR	22928737	22929224	.	-	.	Parent=Os10t0575800-01
Chr10	irgsp1_rep	three_prime_UTR	22928447	22928626	.	-	.	Parent=Os10t0575800-01
Chr10	irgsp1_rep	three_prime_UTR	22928203	22928361	.	-	.	Parent=Os10t0575800-01
Chr10	irgsp1_rep	three_prime_UTR	22927782	22927856	.	-	.	Parent=Os10t0575800-01
Chr10	irgsp1_rep	three_prime_UTR	22927403	22927547	.	-	.	Parent=Os10t0575800-01
Chr10	irgsp1_rep	three_prime_UTR	22927043	22927236	.	-	.	Parent=Os10t0575800-01
Chr10	irgsp1_rep	three_prime_UTR	22926129	22926341	.	-	.	Parent=Os10t0575800-01
Chr10	irgsp1_rep	three_prime_UTR	22924144	22924788	.	-	.	Parent=Os10t0575800-01
Chr10	irgsp1_rep	three_prime_UTR	22923945	22924055	.	-	.	Parent=Os10t0575800-01
Chr10	irgsp1_rep	three_prime_UTR	22922968	22923452	.	-	.	Parent=Os10t0575800-01
Chr10	irgsp1_rep	mRNA	22934799	22935718	.	+	.	ID=Os10t0575900-00;Name=Os10t0575900-00;Locus_id=Os10g0575900;Note=Conserved hypothetical protein.;Transcript_evidence=FP091948 (DDBJ);ORF_evidence=Q8W3I0 (UniProt);TENOR=Os10t0575900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	22934799	22935135	.	+	0	Parent=Os10t0575900-00
Chr10	irgsp1_rep	CDS	22935336	22935718	.	+	2	Parent=Os10t0575900-00
Chr10	irgsp1_rep	mRNA	22937929	22938822	.	-	.	ID=Os10t0575950-01;Name=Os10t0575950-01;Locus_id=Os10g0575950;Oryzabase Gene Name Synonym(s)=SAMBA;Note=Similar to F5D14.6 protein.;Transcript_evidence=AK241904 (DDBJ%2C Best hit);ORF_evidence=Q9LQM9 (UniProt);NIAS_FLcDNA=J075038C21;Oryzabase=21059;TENOR=Os10t0575950-01;KEGG=Os10t0575950-01
Chr10	irgsp1_rep	five_prime_UTR	22938783	22938822	.	-	.	Parent=Os10t0575950-01
Chr10	irgsp1_rep	CDS	22938668	22938782	.	-	0	Parent=Os10t0575950-01
Chr10	irgsp1_rep	CDS	22938470	22938580	.	-	2	Parent=Os10t0575950-01
Chr10	irgsp1_rep	CDS	22938222	22938295	.	-	2	Parent=Os10t0575950-01
Chr10	irgsp1_rep	three_prime_UTR	22937929	22938221	.	-	.	Parent=Os10t0575950-01
Chr10	irgsp1_rep	mRNA	22939162	22940908	.	+	.	ID=Os10t0576000-01;Name=Os10t0576000-01;Locus_id=Os10g0576000;Note=Similar to NADH-ubiquinone oxidoreductase-related.;Transcript_evidence=AK058777 (DDBJ%2C Best hit);ORF_evidence=NP_564540.1 (RefSeq);InterPro=NADH-ubiquinone oxidoreductase%2C subunit 10 (IPR019377),Complex I subunit NDUFS6 (IPR020163);NIAS_FLcDNA=001-002-B06;Expression=AK058777;TENOR=Os10t0576000-01;KEGG=Os10t0576000-01 (EC:1.6.5.3%2C EC:1.6.99.3)
Chr10	irgsp1_rep	CDS	22939162	22939312	.	+	0	Parent=Os10t0576000-01
Chr10	irgsp1_rep	CDS	22939411	22939442	.	+	2	Parent=Os10t0576000-01
Chr10	irgsp1_rep	three_prime_UTR	22939443	22939475	.	+	.	Parent=Os10t0576000-01
Chr10	irgsp1_rep	three_prime_UTR	22940669	22940908	.	+	.	Parent=Os10t0576000-01
Chr10	irgsp1_rep	mRNA	22943682	22945106	.	+	.	ID=Os10t0576050-00;Name=Os10t0576050-00;Locus_id=Os10g0576050;Note=Non-protein coding transcript.;Transcript_evidence=BT084585 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0576050-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	exon	22943682	22945106	.	+	.	Parent=Os10t0576050-00
Chr10	irgsp1_rep	mRNA	22943712	22945124	.	-	.	ID=Os10t0576100-01;Name=Os10t0576100-01;Locus_id=Os10g0576100;CGSNL Gene Symbol=ITPK5;CGSNL Gene Name=INOSITOL 1%2C3%2C4-TRISPHOSPHATE 5/6-KINASE 5;Oryzabase Gene Symbol Synonym(s)=OsITPK5%2C OsITP5/6K-5%2C OsITL3;Oryzabase Gene Name Synonym(s)=inositol 1%2C 3%2C 4-trisphosphate 5/6-kinase 5;Note=Similar to Inositol phosphate kinase.;Transcript_evidence=AK059148 (DDBJ%2C Best hit);ORF_evidence=A0JJZ6 (UniProt);GO=Biological Process: inositol trisphosphate metabolic process (GO:0032957),Cellular Component: intracellular (GO:0005622),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: ATP binding (GO:0005524),Molecular Function: inositol tetrakisphosphate 1-kinase activity (GO:0047325),Molecular Function: inositol-1%2C3%2C4-trisphosphate 6-kinase activity (GO:0052725),Molecular Function: inositol-1%2C3%2C4-trisphosphate 5-kinase activity (GO:0052726);InterPro=Inositol-tetrakisphosphate 1-kinase (IPR008656),Inositol-tetrakisphosphate 1-kinase%2C plant (IPR017427);NIAS_FLcDNA=001-023-B06;Oryzabase=11441;TENOR=Os10t0576100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	22945084	22945124	.	-	.	Parent=Os10t0576100-01
Chr10	irgsp1_rep	CDS	22944055	22945083	.	-	0	Parent=Os10t0576100-01
Chr10	irgsp1_rep	three_prime_UTR	22943712	22944054	.	-	.	Parent=Os10t0576100-01
Chr10	irgsp1_rep	mRNA	22964272	22965575	.	-	.	ID=Os10t0576600-01;Name=Os10t0576600-01;Locus_id=Os10g0576600;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK104125 (DDBJ%2C Best hit),AK061555 (DDBJ%2C Best hit),AK099195 (DDBJ%2C Best hit),AK104496 (DDBJ%2C Best hit);ORF_evidence=B6U810 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026);NIAS_FLcDNA=006-203-D09,006-311-C05,J023113L04,006-302-C07;TENOR=Os10t0576600-01
Chr10	irgsp1_rep	five_prime_UTR	22965524	22965575	.	-	.	Parent=Os10t0576600-01
Chr10	irgsp1_rep	CDS	22964946	22965523	.	-	0	Parent=Os10t0576600-01
Chr10	irgsp1_rep	CDS	22964738	22964843	.	-	1	Parent=Os10t0576600-01
Chr10	irgsp1_rep	three_prime_UTR	22964272	22964737	.	-	.	Parent=Os10t0576600-01
Chr10	irgsp1_rep	mRNA	22964272	22965575	.	-	.	ID=Os10t0576600-02;Name=Os10t0576600-02;Locus_id=Os10g0576600;Note=Hypothetical conserved gene.;Transcript_evidence=AK060369 (DDBJ%2C Best hit);ORF_evidence=B6U810 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026);NIAS_FLcDNA=001-009-A12;Expression=AK060369;TENOR=Os10t0576600-02;KEGG=Os10t0576600-02
Chr10	irgsp1_rep	five_prime_UTR	22965524	22965575	.	-	.	Parent=Os10t0576600-02
Chr10	irgsp1_rep	CDS	22964939	22965523	.	-	0	Parent=Os10t0576600-02
Chr10	irgsp1_rep	three_prime_UTR	22964272	22964938	.	-	.	Parent=Os10t0576600-02
Chr10	irgsp1_rep	mRNA	22975416	22976146	.	-	.	ID=Os10t0576750-00;Name=Os10t0576750-00;Locus_id=Os10g0576750;Note=Similar to 002-116-F08%2C full insert sequence.;Transcript_evidence=FP091899 (DDBJ);ORF_evidence=B7E9W2 (UniProt);TENOR=Os10t0576750-00
Chr10	irgsp1_rep	CDS	22976047	22976146	.	-	0	Parent=Os10t0576750-00
Chr10	irgsp1_rep	CDS	22975744	22975769	.	-	2	Parent=Os10t0576750-00
Chr10	irgsp1_rep	three_prime_UTR	22975416	22975743	.	-	.	Parent=Os10t0576750-00
Chr10	irgsp1_rep	mRNA	22981680	22986191	.	+	.	ID=Os10t0576900-01;Name=Os10t0576900-01;Locus_id=Os10g0576900;CGSNL Gene Symbol=CCR3;CGSNL Gene Name=CINNAMOYL-COA REDUCTASE 3;Oryzabase Gene Symbol Synonym(s)=OsCCR3;Oryzabase Gene Name Synonym(s)=Cinnamoyl-CoA reductase 3;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK064038 (DDBJ%2C Best hit),AK099381 (DDBJ%2C Best hit);ORF_evidence=B4F9C1 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-125-C10,J033068A22;Oryzabase=22238;TENOR=Os10t0576900-01
Chr10	irgsp1_rep	five_prime_UTR	22981680	22981776	.	+	.	Parent=Os10t0576900-01
Chr10	irgsp1_rep	CDS	22981777	22982082	.	+	0	Parent=Os10t0576900-01
Chr10	irgsp1_rep	CDS	22982691	22982898	.	+	0	Parent=Os10t0576900-01
Chr10	irgsp1_rep	CDS	22985413	22985761	.	+	2	Parent=Os10t0576900-01
Chr10	irgsp1_rep	CDS	22985875	22985971	.	+	1	Parent=Os10t0576900-01
Chr10	irgsp1_rep	three_prime_UTR	22985972	22986191	.	+	.	Parent=Os10t0576900-01
Chr10	irgsp1_rep	mRNA	22986880	22989876	.	-	.	ID=Os10t0577000-01;Name=Os10t0577000-01;Locus_id=Os10g0577000;Note=Conserved hypothetical protein.;Transcript_evidence=AK059043 (DDBJ%2C Best hit);ORF_evidence=Q8W3G9 (UniProt);NIAS_FLcDNA=001-021-D06;TENOR=Os10t0577000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	22989742	22989876	.	-	.	Parent=Os10t0577000-01
Chr10	irgsp1_rep	CDS	22989435	22989741	.	-	0	Parent=Os10t0577000-01
Chr10	irgsp1_rep	CDS	22989131	22989144	.	-	2	Parent=Os10t0577000-01
Chr10	irgsp1_rep	three_prime_UTR	22989030	22989130	.	-	.	Parent=Os10t0577000-01
Chr10	irgsp1_rep	three_prime_UTR	22988227	22988342	.	-	.	Parent=Os10t0577000-01
Chr10	irgsp1_rep	three_prime_UTR	22987921	22988109	.	-	.	Parent=Os10t0577000-01
Chr10	irgsp1_rep	three_prime_UTR	22987608	22987753	.	-	.	Parent=Os10t0577000-01
Chr10	irgsp1_rep	three_prime_UTR	22986880	22987235	.	-	.	Parent=Os10t0577000-01
Chr10	irgsp1_rep	mRNA	22986883	22989866	.	-	.	ID=Os10t0577000-02;Name=Os10t0577000-02;Locus_id=Os10g0577000;Note=NERD domain containing protein.;Transcript_evidence=AK070910 (DDBJ%2C Best hit);ORF_evidence=Q8W3G9 (UniProt);InterPro=NERD (IPR011528);NIAS_FLcDNA=J023065M03;Expression=AK070910;TENOR=Os10t0577000-02;KEGG=Os10t0577000-02
Chr10	irgsp1_rep	five_prime_UTR	22989742	22989866	.	-	.	Parent=Os10t0577000-02
Chr10	irgsp1_rep	CDS	22989605	22989741	.	-	0	Parent=Os10t0577000-02
Chr10	irgsp1_rep	CDS	22989435	22989536	.	-	1	Parent=Os10t0577000-02
Chr10	irgsp1_rep	CDS	22989030	22989144	.	-	1	Parent=Os10t0577000-02
Chr10	irgsp1_rep	CDS	22988227	22988342	.	-	0	Parent=Os10t0577000-02
Chr10	irgsp1_rep	CDS	22987921	22988109	.	-	1	Parent=Os10t0577000-02
Chr10	irgsp1_rep	CDS	22987608	22987753	.	-	1	Parent=Os10t0577000-02
Chr10	irgsp1_rep	CDS	22987054	22987235	.	-	2	Parent=Os10t0577000-02
Chr10	irgsp1_rep	three_prime_UTR	22986883	22987053	.	-	.	Parent=Os10t0577000-02
Chr10	irgsp1_rep	mRNA	22991022	22994146	.	+	.	ID=Os10t0577100-00;Name=Os10t0577100-00;Locus_id=Os10g0577100;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8W3G8 (UniProt);TENOR=Os10t0577100-00
Chr10	irgsp1_rep	CDS	22991022	22991044	.	+	0	Parent=Os10t0577100-00
Chr10	irgsp1_rep	CDS	22991230	22991404	.	+	1	Parent=Os10t0577100-00
Chr10	irgsp1_rep	CDS	22991483	22994146	.	+	0	Parent=Os10t0577100-00
Chr10	irgsp1_rep	mRNA	22997462	22998785	.	-	.	ID=Os10t0577200-01;Name=Os10t0577200-01;Locus_id=Os10g0577200;Note=Conserved hypothetical protein.;Transcript_evidence=AK106138 (DDBJ%2C Best hit);ORF_evidence=A3C7M0 (UniProt);NIAS_FLcDNA=001-207-G06;Expression=AK106138;TENOR=Os10t0577200-01;KEGG=Os10t0577200-01
Chr10	irgsp1_rep	five_prime_UTR	22998785	22998785	.	-	.	Parent=Os10t0577200-01
Chr10	irgsp1_rep	CDS	22997738	22998784	.	-	0	Parent=Os10t0577200-01
Chr10	irgsp1_rep	three_prime_UTR	22997462	22997737	.	-	.	Parent=Os10t0577200-01
Chr10	irgsp1_rep	mRNA	23005547	23007668	.	-	.	ID=Os10t0577400-01;Name=Os10t0577400-01;Locus_id=Os10g0577400;Note=Conserved hypothetical protein.;Transcript_evidence=AK064295 (DDBJ%2C Best hit),AK122076 (DDBJ%2C Best hit);ORF_evidence=Q8VWL4 (UniProt);NIAS_FLcDNA=002-107-A02,J033118P16;TENOR=Os10t0577400-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	23007578	23007668	.	-	.	Parent=Os10t0577400-01
Chr10	irgsp1_rep	CDS	23007092	23007577	.	-	0	Parent=Os10t0577400-01
Chr10	irgsp1_rep	CDS	23005774	23006340	.	-	0	Parent=Os10t0577400-01
Chr10	irgsp1_rep	three_prime_UTR	23005547	23005773	.	-	.	Parent=Os10t0577400-01
Chr10	irgsp1_rep	mRNA	23008647	23011807	.	-	.	ID=Os10t0577500-01;Name=Os10t0577500-01;Locus_id=Os10g0577500;CGSNL Gene Symbol=XTH25;CGSNL Gene Name=XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 25;Oryzabase Gene Symbol Synonym(s)=OsXTH25;Oryzabase Gene Name Synonym(s)=xyloglucan endotransglucosylase/hydrolase%2C xyloglucan endotransglucosylase 25;Note=Concanavalin A-like lectin/glucanase%2C subgroup domain containing protein.;Transcript_evidence=AK068365 (DDBJ%2C Best hit);ORF_evidence=C5IG71 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: cellular glucan metabolic process (GO:0006073),Cellular Component: cell wall (GO:0005618),Cellular Component: apoplast (GO:0048046),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762);InterPro=Glycoside hydrolase%2C family 16 (IPR000757),Concanavalin A-like lectin/glucanase (IPR008985),Xyloglucan endo-transglycosylase%2C C-terminal (IPR010713),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Xyloglucan endotransglucosylase/hydrolase (IPR016455);NIAS_FLcDNA=J013146O14;Oryzabase=6506;Expression=AK068365;TENOR=Os10t0577500-01;KEGG=Os10t0577500-01 (EC:2.4.1.207)
Chr10	irgsp1_rep	five_prime_UTR	23011605	23011807	.	-	.	Parent=Os10t0577500-01
Chr10	irgsp1_rep	CDS	23011418	23011604	.	-	0	Parent=Os10t0577500-01
Chr10	irgsp1_rep	CDS	23011207	23011307	.	-	2	Parent=Os10t0577500-01
Chr10	irgsp1_rep	CDS	23008785	23009468	.	-	0	Parent=Os10t0577500-01
Chr10	irgsp1_rep	three_prime_UTR	23008647	23008784	.	-	.	Parent=Os10t0577500-01
Chr10	irgsp1_rep	mRNA	23008601	23011554	.	-	.	ID=Os10t0577500-02;Name=Os10t0577500-02;Locus_id=Os10g0577500;CGSNL Gene Symbol=XTH25;CGSNL Gene Name=XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 25;Oryzabase Gene Symbol Synonym(s)=OsXTH25;Oryzabase Gene Name Synonym(s)=xyloglucan endotransglucosylase/hydrolase%2C xyloglucan endotransglucosylase 25;Note=Hypothetical conserved gene.;Transcript_evidence=AK060094 (DDBJ%2C Best hit);ORF_evidence=C5IG71 (UniProt);InterPro=Concanavalin A-like lectin/glucanase (IPR008985),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320);NIAS_FLcDNA=006-307-E12;Oryzabase=6506;Expression=AK060094;TENOR=Os10t0577500-02;KEGG=Os10t0577500-02 (EC:2.4.1.207)
Chr10	irgsp1_rep	five_prime_UTR	23011554	23011554	.	-	.	Parent=Os10t0577500-02
Chr10	irgsp1_rep	CDS	23011418	23011553	.	-	0	Parent=Os10t0577500-02
Chr10	irgsp1_rep	CDS	23011244	23011307	.	-	2	Parent=Os10t0577500-02
Chr10	irgsp1_rep	CDS	23009062	23009446	.	-	1	Parent=Os10t0577500-02
Chr10	irgsp1_rep	three_prime_UTR	23008601	23009061	.	-	.	Parent=Os10t0577500-02
Chr10	irgsp1_rep	mRNA	23025815	23031701	.	+	.	ID=Os10t0577600-01;Name=Os10t0577600-01;Locus_id=Os10g0577600;RAP-DB Gene Symbol Synonym(s)=JMJ706%2C OsJMJ706;RAP-DB Gene Name Synonym(s)=Jumonji 706;Oryzabase Gene Symbol Synonym(s)=JMJ706%2C OsJMJ706;Oryzabase Gene Name Synonym(s)=Jumonji 706;Note=H3K9 demethylase%2C Floral organ development;Transcript_evidence=AK073475;ORF_evidence=Q336N8;GO=Cellular Component: nucleus (GO:0005634);InterPro=Transcription factor jumonji%2C JmjN (IPR003349),JmjC domain (IPR003347),Zinc finger%2C C5HC2-type (IPR004198);NIAS_FLcDNA=J033044E04;Manual Curation=June 13%2C 2014;Literature_PMID=24596329,18765808;Oryzabase=15203;TENOR=Os10t0577600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	23025815	23026052	.	+	.	Parent=Os10t0577600-01
Chr10	irgsp1_rep	five_prime_UTR	23027332	23027350	.	+	.	Parent=Os10t0577600-01
Chr10	irgsp1_rep	CDS	23027351	23027741	.	+	0	Parent=Os10t0577600-01
Chr10	irgsp1_rep	CDS	23027864	23028020	.	+	2	Parent=Os10t0577600-01
Chr10	irgsp1_rep	CDS	23028098	23028317	.	+	1	Parent=Os10t0577600-01
Chr10	irgsp1_rep	CDS	23028433	23028486	.	+	0	Parent=Os10t0577600-01
Chr10	irgsp1_rep	CDS	23028573	23028652	.	+	0	Parent=Os10t0577600-01
Chr10	irgsp1_rep	CDS	23028739	23029016	.	+	1	Parent=Os10t0577600-01
Chr10	irgsp1_rep	CDS	23029098	23029499	.	+	2	Parent=Os10t0577600-01
Chr10	irgsp1_rep	CDS	23029573	23029895	.	+	2	Parent=Os10t0577600-01
Chr10	irgsp1_rep	CDS	23029970	23030233	.	+	0	Parent=Os10t0577600-01
Chr10	irgsp1_rep	CDS	23030833	23031240	.	+	0	Parent=Os10t0577600-01
Chr10	irgsp1_rep	three_prime_UTR	23031241	23031701	.	+	.	Parent=Os10t0577600-01
Chr10	irgsp1_rep	mRNA	23032206	23034966	.	+	.	ID=Os10t0577700-01;Name=Os10t0577700-01;Locus_id=Os10g0577700;Note=CS domain containing protein.;Transcript_evidence=AK061718 (DDBJ%2C Best hit),AK100237 (DDBJ%2C Best hit);ORF_evidence=B6TG86 (UniProt);GO=Molecular Function: shikimate kinase activity (GO:0004765),Molecular Function: ATP binding (GO:0005524);InterPro=Shikimate kinase (IPR000623),CS-like domain (IPR007052),HSP20-like chaperone (IPR008978),CS domain (IPR017447);NIAS_FLcDNA=001-037-H11,J023052F21;Expression=AK061718;TENOR=Os10t0577700-01;KEGG=Os10t0577700-01
Chr10	irgsp1_rep	five_prime_UTR	23032206	23032305	.	+	.	Parent=Os10t0577700-01
Chr10	irgsp1_rep	CDS	23032306	23032516	.	+	0	Parent=Os10t0577700-01
Chr10	irgsp1_rep	CDS	23032981	23033173	.	+	2	Parent=Os10t0577700-01
Chr10	irgsp1_rep	CDS	23033250	23033444	.	+	1	Parent=Os10t0577700-01
Chr10	irgsp1_rep	CDS	23033699	23033760	.	+	1	Parent=Os10t0577700-01
Chr10	irgsp1_rep	CDS	23033890	23033956	.	+	2	Parent=Os10t0577700-01
Chr10	irgsp1_rep	CDS	23034041	23034159	.	+	1	Parent=Os10t0577700-01
Chr10	irgsp1_rep	CDS	23034303	23034479	.	+	2	Parent=Os10t0577700-01
Chr10	irgsp1_rep	CDS	23034637	23034740	.	+	2	Parent=Os10t0577700-01
Chr10	irgsp1_rep	three_prime_UTR	23034741	23034966	.	+	.	Parent=Os10t0577700-01
Chr10	irgsp1_rep	mRNA	23035367	23039711	.	-	.	ID=Os10t0577800-01;Name=Os10t0577800-01;Locus_id=Os10g0577800;RAP-DB Gene Symbol Synonym(s)=TWI1%2C OsSRO1a;RAP-DB Gene Name Synonym(s)=TWISTED-LEAF1%2C SIMILAR to RCD1 a;CGSNL Gene Symbol=TWI1;CGSNL Gene Name=TWISTED-LEAF1;Oryzabase Gene Symbol Synonym(s)=OsSRO1a%2C SRO1a%2C OsTWI1%2C RCD1%2C OsRCD1;Oryzabase Gene Name Synonym(s)=SRO protein 1a%2C SIMILAR to RCD1 a%2C TWISTED-LEAF 1%2C Nuclear proteins RCD1;Note=Transcription factor binding protein%2C Poly (ADP-ribose) polymerase (PARP) domain protein%2C Abiotic stress tolerance%2C Control of leaf cell fate;Transcript_evidence=AK072769;ORF_evidence=Q8W3G3;GO=Molecular Function: NAD+ ADP-ribosyltransferase activity (GO:0003950);InterPro=Poly(ADP-ribose) polymerase%2C catalytic domain (IPR012317),RST domain of plant C-terminal (IPR022003);NIAS_FLcDNA=J023139M21;Manual Curation=August 30%2C 2018;Literature_PMID=30151833,26870074;Oryzabase=11663;Expression=AK072769;TENOR=Os10t0577800-01;KEGG=Os10t0577800-01;Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737)
Chr10	irgsp1_rep	five_prime_UTR	23039379	23039711	.	-	.	Parent=Os10t0577800-01
Chr10	irgsp1_rep	five_prime_UTR	23038497	23038667	.	-	.	Parent=Os10t0577800-01
Chr10	irgsp1_rep	CDS	23037388	23038496	.	-	0	Parent=Os10t0577800-01
Chr10	irgsp1_rep	CDS	23036861	23037102	.	-	1	Parent=Os10t0577800-01
Chr10	irgsp1_rep	CDS	23036657	23036745	.	-	2	Parent=Os10t0577800-01
Chr10	irgsp1_rep	CDS	23036186	23036368	.	-	0	Parent=Os10t0577800-01
Chr10	irgsp1_rep	CDS	23035994	23036089	.	-	0	Parent=Os10t0577800-01
Chr10	irgsp1_rep	CDS	23035678	23035734	.	-	0	Parent=Os10t0577800-01
Chr10	irgsp1_rep	three_prime_UTR	23035367	23035677	.	-	.	Parent=Os10t0577800-01
Chr10	irgsp1_rep	mRNA	23037430	23039656	.	-	.	ID=Os10t0577800-02;Name=Os10t0577800-02;Locus_id=Os10g0577800;CGSNL Gene Symbol=TWI1;CGSNL Gene Name=TWISTED-LEAF1;Oryzabase Gene Symbol Synonym(s)=OsSRO1a%2C SRO1a%2C OsTWI1%2C RCD1%2C OsRCD1;Oryzabase Gene Name Synonym(s)=SRO protein 1a%2C SIMILAR to RCD1 a%2C TWISTED-LEAF 1%2C Nuclear proteins RCD1;Note=Similar to Poly polymerase catalytic domain containing protein%2C expressed.;Transcript_evidence=AK121290 (DDBJ%2C Best hit);ORF_evidence=Q336N6 (UniProt);GO=Molecular Function: NAD+ ADP-ribosyltransferase activity (GO:0003950);InterPro=Poly(ADP-ribose) polymerase%2C catalytic domain (IPR012317);NIAS_FLcDNA=J023109E12;Oryzabase=11663;TENOR=Os10t0577800-02
Chr10	irgsp1_rep	five_prime_UTR	23039379	23039656	.	-	.	Parent=Os10t0577800-02
Chr10	irgsp1_rep	five_prime_UTR	23038497	23038667	.	-	.	Parent=Os10t0577800-02
Chr10	irgsp1_rep	CDS	23037430	23038496	.	-	0	Parent=Os10t0577800-02
Chr10	irgsp1_rep	mRNA	23044693	23050709	.	+	.	ID=Os10t0577900-01;Name=Os10t0577900-01;Locus_id=Os10g0577900;Oryzabase Gene Symbol Synonym(s)=GPAT%2C OsGPAT;Oryzabase Gene Name Synonym(s)=glycerol-3-phosphate acyltransferase%2C plastidial GPAT;Note=Similar to Glycerol-3-phosphate acyltransferase (Fragment).;Transcript_evidence=AK065123 (DDBJ%2C Best hit);ORF_evidence=NP_001152109.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: glycerol-3-phosphate O-acyltransferase activity (GO:0004366),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Phospholipid/glycerol acyltransferase (IPR002123),Glycerol-3-phosphate O-acyltransferase%2C chloroplast (IPR016222),Glycerol-3-phosphate O-acyltransferase%2C alpha helical bundle%2C N-terminal (IPR023083);NIAS_FLcDNA=J013001P02;Oryzabase=15757;Expression=AK065123;TENOR=Os10t0577900-01;KEGG=Os10t0577900-01
Chr10	irgsp1_rep	five_prime_UTR	23044693	23044829	.	+	.	Parent=Os10t0577900-01
Chr10	irgsp1_rep	CDS	23044830	23045049	.	+	0	Parent=Os10t0577900-01
Chr10	irgsp1_rep	CDS	23045311	23045408	.	+	2	Parent=Os10t0577900-01
Chr10	irgsp1_rep	CDS	23045491	23045577	.	+	0	Parent=Os10t0577900-01
Chr10	irgsp1_rep	CDS	23045667	23045764	.	+	0	Parent=Os10t0577900-01
Chr10	irgsp1_rep	CDS	23046258	23046315	.	+	1	Parent=Os10t0577900-01
Chr10	irgsp1_rep	CDS	23047022	23047123	.	+	0	Parent=Os10t0577900-01
Chr10	irgsp1_rep	CDS	23047220	23047281	.	+	0	Parent=Os10t0577900-01
Chr10	irgsp1_rep	CDS	23047389	23047499	.	+	1	Parent=Os10t0577900-01
Chr10	irgsp1_rep	CDS	23047821	23047899	.	+	1	Parent=Os10t0577900-01
Chr10	irgsp1_rep	CDS	23048049	23048168	.	+	0	Parent=Os10t0577900-01
Chr10	irgsp1_rep	CDS	23048249	23048362	.	+	0	Parent=Os10t0577900-01
Chr10	irgsp1_rep	CDS	23049129	23049263	.	+	0	Parent=Os10t0577900-01
Chr10	irgsp1_rep	three_prime_UTR	23049264	23049288	.	+	.	Parent=Os10t0577900-01
Chr10	irgsp1_rep	three_prime_UTR	23050035	23050189	.	+	.	Parent=Os10t0577900-01
Chr10	irgsp1_rep	three_prime_UTR	23050295	23050709	.	+	.	Parent=Os10t0577900-01
Chr10	irgsp1_rep	mRNA	23052205	23055005	.	+	.	ID=Os10t0578000-01;Name=Os10t0578000-01;Locus_id=Os10g0578000;Note=Similar to hepatocyte growth factor-regulated tyrosine kinase substrate-like protein [Oryza sativa (japonica cultivar-group)].;Transcript_evidence=AK067871 (DDBJ%2C Best hit);ORF_evidence=Q108V5 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886);InterPro=VHS (IPR002014),ENTH/VHS (IPR008942);NIAS_FLcDNA=J013126G20;Expression=AK067871;TENOR=Os10t0578000-01;KEGG=Os10t0578000-01
Chr10	irgsp1_rep	five_prime_UTR	23052205	23052300	.	+	.	Parent=Os10t0578000-01
Chr10	irgsp1_rep	five_prime_UTR	23052948	23052975	.	+	.	Parent=Os10t0578000-01
Chr10	irgsp1_rep	CDS	23052976	23053494	.	+	0	Parent=Os10t0578000-01
Chr10	irgsp1_rep	CDS	23053805	23053850	.	+	0	Parent=Os10t0578000-01
Chr10	irgsp1_rep	CDS	23054526	23054686	.	+	2	Parent=Os10t0578000-01
Chr10	irgsp1_rep	three_prime_UTR	23054687	23055005	.	+	.	Parent=Os10t0578000-01
Chr10	irgsp1_rep	mRNA	23055146	23060773	.	+	.	ID=Os10t0578050-01;Name=Os10t0578050-01;Locus_id=Os10g0578050;Note=Conserved hypothetical protein.;Transcript_evidence=AK287499 (DDBJ%2C Best hit);ORF_evidence=NP_001176289.1 (RefSeq);NIAS_FLcDNA=J043033L13;TENOR=Os10t0578050-01;KEGG=Os10t0578050-01
Chr10	irgsp1_rep	five_prime_UTR	23055146	23055175	.	+	.	Parent=Os10t0578050-01
Chr10	irgsp1_rep	CDS	23055176	23055565	.	+	0	Parent=Os10t0578050-01
Chr10	irgsp1_rep	three_prime_UTR	23055566	23055643	.	+	.	Parent=Os10t0578050-01
Chr10	irgsp1_rep	three_prime_UTR	23056440	23056517	.	+	.	Parent=Os10t0578050-01
Chr10	irgsp1_rep	three_prime_UTR	23060190	23060773	.	+	.	Parent=Os10t0578050-01
Chr10	irgsp1_rep	mRNA	23055146	23057719	.	+	.	ID=Os10t0578050-02;Name=Os10t0578050-02;Locus_id=Os10g0578050;Note=Hypothetical protein.;Transcript_evidence=AK070183 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023045B04;Expression=AK070183;TENOR=Os10t0578050-02;KEGG=Os10t0578050-02
Chr10	irgsp1_rep	five_prime_UTR	23055146	23055175	.	+	.	Parent=Os10t0578050-02
Chr10	irgsp1_rep	CDS	23055176	23055565	.	+	0	Parent=Os10t0578050-02
Chr10	irgsp1_rep	three_prime_UTR	23055566	23057719	.	+	.	Parent=Os10t0578050-02
Chr10	irgsp1_rep	mRNA	23062454	23066292	.	+	.	ID=Os10t0578200-01;Name=Os10t0578200-01;Locus_id=Os10g0578200;RAP-DB Gene Symbol Synonym(s)=CSLD1%2C csld1%2C OsCSLD1%2C OsCslD1;RAP-DB Gene Name Synonym(s)=CELLULOSE SYNTHASE LIKE D1%2C Cellulose Synthase-Like D1%2C Cellulose synthase-like protein D1;CGSNL Gene Symbol=CSLD1;CGSNL Gene Name=CELLULOSE SYNTHASE LIKE D1;Oryzabase Gene Symbol Synonym(s)=csld1%2C OsCSLD1%2C OsCslD1;Oryzabase Gene Name Synonym(s)=Cellulose Synthase-Like D1%2C Cellulose synthase-like protein D1;Note=Glycosyltransferase family 2 (GT2) protein%2C Root hair morphogenesis;Transcript_evidence=BK000089 (Dongjin);ORF_evidence=Q8W3F9;GO=Biological Process: cellulose biosynthetic process (GO:0030244),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760),Cellular Component: membrane (GO:0016020);InterPro=Cellulose synthase (IPR005150),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);Manual Curation=January 15%2C 2010;Literature_PMID=11842136,17259288;Oryzabase=7338;TENOR=Os10t0578200-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	23062454	23065129	.	+	0	Parent=Os10t0578200-01
Chr10	irgsp1_rep	CDS	23065217	23065924	.	+	0	Parent=Os10t0578200-01
Chr10	irgsp1_rep	three_prime_UTR	23065925	23066292	.	+	.	Parent=Os10t0578200-01
Chr10	irgsp1_rep	mRNA	23066471	23069754	.	-	.	ID=Os10t0578300-01;Name=Os10t0578300-01;Locus_id=Os10g0578300;Note=Conserved hypothetical protein.;Transcript_evidence=AK111426 (DDBJ%2C Best hit);ORF_evidence=B9G768 (UniProt);NIAS_FLcDNA=002-182-H03;TENOR=Os10t0578300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	23069565	23069754	.	-	.	Parent=Os10t0578300-01
Chr10	irgsp1_rep	five_prime_UTR	23068377	23068517	.	-	.	Parent=Os10t0578300-01
Chr10	irgsp1_rep	five_prime_UTR	23068054	23068255	.	-	.	Parent=Os10t0578300-01
Chr10	irgsp1_rep	five_prime_UTR	23067739	23067842	.	-	.	Parent=Os10t0578300-01
Chr10	irgsp1_rep	five_prime_UTR	23067308	23067578	.	-	.	Parent=Os10t0578300-01
Chr10	irgsp1_rep	CDS	23067251	23067307	.	-	0	Parent=Os10t0578300-01
Chr10	irgsp1_rep	CDS	23066757	23066978	.	-	0	Parent=Os10t0578300-01
Chr10	irgsp1_rep	three_prime_UTR	23066471	23066756	.	-	.	Parent=Os10t0578300-01
Chr10	irgsp1_rep	mRNA	23069756	23071651	.	-	.	ID=Os10t0578500-00;Name=Os10t0578500-00;Locus_id=Os10g0578500;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7XBT9 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os10t0578500-00;KEGG=Os10t0578500-00
Chr10	irgsp1_rep	CDS	23069756	23071651	.	-	0	Parent=Os10t0578500-00
Chr10	irgsp1_rep	mRNA	23073811	23075278	.	-	.	ID=Os10t0578600-01;Name=Os10t0578600-01;Locus_id=Os10g0578600;Note=Methyltransferase type 11 domain containing protein.;Transcript_evidence=AK107128 (DDBJ%2C Best hit);ORF_evidence=Q9FRQ3 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Methyltransferase type 11 (IPR013216);NIAS_FLcDNA=002-124-C02;Expression=AK107128;TENOR=Os10t0578600-01;KEGG=Os10t0578600-01
Chr10	irgsp1_rep	five_prime_UTR	23075253	23075278	.	-	.	Parent=Os10t0578600-01
Chr10	irgsp1_rep	CDS	23074056	23075252	.	-	0	Parent=Os10t0578600-01
Chr10	irgsp1_rep	three_prime_UTR	23073811	23074055	.	-	.	Parent=Os10t0578600-01
Chr10	irgsp1_rep	mRNA	23073064	23075243	.	-	.	ID=Os10t0578600-02;Name=Os10t0578600-02;Locus_id=Os10g0578600;Note=Methyltransferase type 11 domain containing protein.;Transcript_evidence=AK119822 (DDBJ%2C Best hit);ORF_evidence=Q9FRQ3 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Methyltransferase type 11 (IPR013216);NIAS_FLcDNA=002-177-D05;Expression=AK119822;TENOR=Os10t0578600-02;KEGG=Os10t0578600-02
Chr10	irgsp1_rep	CDS	23074056	23075243	.	-	0	Parent=Os10t0578600-02
Chr10	irgsp1_rep	three_prime_UTR	23073064	23074055	.	-	.	Parent=Os10t0578600-02
Chr10	irgsp1_rep	mRNA	23073745	23075356	.	+	.	ID=Os10t0578700-01;Name=Os10t0578700-01;Locus_id=Os10g0578700;Note=Hypothetical protein.;Transcript_evidence=AK071802 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023112H03;Expression=AK071802;TENOR=Os10t0578700-01;KEGG=Os10t0578700-01
Chr10	irgsp1_rep	five_prime_UTR	23073745	23074034	.	+	.	Parent=Os10t0578700-01
Chr10	irgsp1_rep	CDS	23074035	23074778	.	+	0	Parent=Os10t0578700-01
Chr10	irgsp1_rep	three_prime_UTR	23074779	23075356	.	+	.	Parent=Os10t0578700-01
Chr10	irgsp1_rep	mRNA	23075402	23079074	.	-	.	ID=Os10t0578800-01;Name=Os10t0578800-01;Locus_id=Os10g0578800;CGSNL Gene Symbol=PLGG2;CGSNL Gene Name=PLASTIDIC GLYCOLATE/GLYCERATE TRANSLOCATOR 2;Oryzabase Gene Symbol Synonym(s)=OsPLGG2;Oryzabase Gene Name Synonym(s)=plastidic glycolate/glycerate translocator 2;Note=Similar to LrgB-like family protein%2C expressed.;Transcript_evidence=AK065615 (DDBJ%2C Best hit);ORF_evidence=Q336M8 (UniProt);NIAS_FLcDNA=J013026B17;Oryzabase=23457;Expression=AK065615;TENOR=Os10t0578800-01;KEGG=Os10t0578800-01
Chr10	irgsp1_rep	five_prime_UTR	23079009	23079074	.	-	.	Parent=Os10t0578800-01
Chr10	irgsp1_rep	CDS	23078925	23079008	.	-	0	Parent=Os10t0578800-01
Chr10	irgsp1_rep	CDS	23078473	23078799	.	-	0	Parent=Os10t0578800-01
Chr10	irgsp1_rep	three_prime_UTR	23075402	23078472	.	-	.	Parent=Os10t0578800-01
Chr10	irgsp1_rep	mRNA	23075424	23079071	.	-	.	ID=Os10t0578800-02;Name=Os10t0578800-02;Locus_id=Os10g0578800;RAP-DB Gene Symbol Synonym(s)=OsPLGG2;RAP-DB Gene Name Synonym(s)=plastidic glycolate/glycerate translocator 2;CGSNL Gene Symbol=PLGG2;CGSNL Gene Name=PLASTIDIC GLYCOLATE/GLYCERATE TRANSLOCATOR 2;Oryzabase Gene Symbol Synonym(s)=OsPLGG2;Oryzabase Gene Name Synonym(s)=plastidic glycolate/glycerate translocator 2;Note=LrgB-like protein family protein.;Transcript_evidence=AK066029;ORF_evidence=Q7XBT7;InterPro=CidB/LrgB family (IPR007300);NIAS_FLcDNA=J013046E02;Manual Curation=February 12%2C 2020;Literature_PMID=32038690;Oryzabase=23457;Expression=AK066029;TENOR=Os10t0578800-02
Chr10	irgsp1_rep	five_prime_UTR	23079009	23079071	.	-	.	Parent=Os10t0578800-02
Chr10	irgsp1_rep	CDS	23078925	23079008	.	-	0	Parent=Os10t0578800-02
Chr10	irgsp1_rep	CDS	23078477	23078786	.	-	0	Parent=Os10t0578800-02
Chr10	irgsp1_rep	CDS	23078087	23078348	.	-	2	Parent=Os10t0578800-02
Chr10	irgsp1_rep	CDS	23077614	23077729	.	-	1	Parent=Os10t0578800-02
Chr10	irgsp1_rep	CDS	23077370	23077479	.	-	2	Parent=Os10t0578800-02
Chr10	irgsp1_rep	CDS	23076993	23077170	.	-	0	Parent=Os10t0578800-02
Chr10	irgsp1_rep	CDS	23076537	23076666	.	-	2	Parent=Os10t0578800-02
Chr10	irgsp1_rep	CDS	23075624	23075810	.	-	1	Parent=Os10t0578800-02
Chr10	irgsp1_rep	three_prime_UTR	23075424	23075623	.	-	.	Parent=Os10t0578800-02
Chr10	irgsp1_rep	mRNA	23079490	23082111	.	-	.	ID=Os10t0578900-01;Name=Os10t0578900-01;Locus_id=Os10g0578900;Note=Similar to CTP:phosphorylcholine cytidylyltransferase (EC 2.7.7.15).;Transcript_evidence=AK073939 (DDBJ%2C Best hit);ORF_evidence=NP_001150315.1 (RefSeq);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=Cytidylyltransferase (IPR004820),Cytidyltransferase-related (IPR004821),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J033076F05;Expression=AK073939;TENOR=Os10t0578900-01;KEGG=Os10t0578900-01 (EC:2.7.7.15)
Chr10	irgsp1_rep	five_prime_UTR	23081955	23082111	.	-	.	Parent=Os10t0578900-01
Chr10	irgsp1_rep	CDS	23081770	23081954	.	-	0	Parent=Os10t0578900-01
Chr10	irgsp1_rep	CDS	23081516	23081629	.	-	1	Parent=Os10t0578900-01
Chr10	irgsp1_rep	CDS	23080946	23081041	.	-	1	Parent=Os10t0578900-01
Chr10	irgsp1_rep	CDS	23080796	23080838	.	-	1	Parent=Os10t0578900-01
Chr10	irgsp1_rep	CDS	23080552	23080707	.	-	0	Parent=Os10t0578900-01
Chr10	irgsp1_rep	CDS	23080346	23080414	.	-	0	Parent=Os10t0578900-01
Chr10	irgsp1_rep	CDS	23080116	23080226	.	-	0	Parent=Os10t0578900-01
Chr10	irgsp1_rep	CDS	23079898	23079993	.	-	0	Parent=Os10t0578900-01
Chr10	irgsp1_rep	three_prime_UTR	23079490	23079897	.	-	.	Parent=Os10t0578900-01
Chr10	irgsp1_rep	mRNA	23079712	23082063	.	-	.	ID=Os10t0578900-02;Name=Os10t0578900-02;Locus_id=Os10g0578900;Note=Similar to CTP:phosphorylcholine cytidylyltransferase (EC 2.7.7.15).;Transcript_evidence=AK060631 (DDBJ%2C Best hit);ORF_evidence=NP_001150315.1 (RefSeq);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=Cytidylyltransferase (IPR004820),Cytidyltransferase-related (IPR004821),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=001-027-A03;Expression=AK060631;TENOR=Os10t0578900-02;KEGG=Os10t0578900-02 (EC:2.7.7.15)
Chr10	irgsp1_rep	five_prime_UTR	23081955	23082063	.	-	.	Parent=Os10t0578900-02
Chr10	irgsp1_rep	CDS	23081770	23081954	.	-	0	Parent=Os10t0578900-02
Chr10	irgsp1_rep	CDS	23081516	23081629	.	-	1	Parent=Os10t0578900-02
Chr10	irgsp1_rep	CDS	23080946	23081041	.	-	1	Parent=Os10t0578900-02
Chr10	irgsp1_rep	CDS	23080796	23080838	.	-	1	Parent=Os10t0578900-02
Chr10	irgsp1_rep	CDS	23080552	23080707	.	-	0	Parent=Os10t0578900-02
Chr10	irgsp1_rep	CDS	23080346	23080414	.	-	0	Parent=Os10t0578900-02
Chr10	irgsp1_rep	CDS	23080116	23080226	.	-	0	Parent=Os10t0578900-02
Chr10	irgsp1_rep	CDS	23079898	23079993	.	-	0	Parent=Os10t0578900-02
Chr10	irgsp1_rep	three_prime_UTR	23079712	23079897	.	-	.	Parent=Os10t0578900-02
Chr10	irgsp1_rep	mRNA	23083220	23086588	.	-	.	ID=Os10t0578950-00;Name=Os10t0578950-00;Locus_id=Os10g0578950;Oryzabase Gene Symbol Synonym(s)=OsACS2;Oryzabase Gene Name Synonym(s)=acyl-CoA synthetase 2%2C type 2 ACS;Note=Similar to 4-coumarate--CoA ligase-like 2.;Transcript_evidence=AK356801 (DDBJ);ORF_evidence=Q336M7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873),AMP-binding%2C conserved site (IPR020845);Oryzabase=15667;TENOR=Os10t0578950-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	23086586	23086588	.	-	.	Parent=Os10t0578950-00
Chr10	irgsp1_rep	CDS	23085542	23086585	.	-	0	Parent=Os10t0578950-00
Chr10	irgsp1_rep	CDS	23085086	23085275	.	-	0	Parent=Os10t0578950-00
Chr10	irgsp1_rep	CDS	23084276	23084415	.	-	2	Parent=Os10t0578950-00
Chr10	irgsp1_rep	CDS	23084081	23084148	.	-	0	Parent=Os10t0578950-00
Chr10	irgsp1_rep	CDS	23083854	23083956	.	-	1	Parent=Os10t0578950-00
Chr10	irgsp1_rep	CDS	23083220	23083351	.	-	0	Parent=Os10t0578950-00
Chr10	irgsp1_rep	mRNA	23088168	23093415	.	-	.	ID=Os10t0579100-01;Name=Os10t0579100-01;Locus_id=Os10g0579100;CGSNL Gene Symbol=OSCA1.4;CGSNL Gene Name=HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 1.4;Oryzabase Gene Symbol Synonym(s)=OsOSCA1.4%2C OsIOSCA1.4%2C OsDDP8%2C DDP8%2C OsDDP8.1%2C OsDDP8.2;Oryzabase Gene Name Synonym(s)=Hyperosmolality-gated calcium-permeable channel 1.4%2C DUF221 Domain containing Protein 8;Note=Protein of unknown function DUF221 domain containing protein.;Transcript_evidence=AK102587 (DDBJ%2C Best hit);ORF_evidence=NP_174489.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Domain of unknown function DUF221 (IPR003864);NIAS_FLcDNA=J033098F01;Oryzabase=19653;Expression=AK102587;TENOR=Os10t0579100-01;KEGG=Os10t0579100-01
Chr10	irgsp1_rep	five_prime_UTR	23093287	23093415	.	-	.	Parent=Os10t0579100-01
Chr10	irgsp1_rep	CDS	23092985	23093286	.	-	0	Parent=Os10t0579100-01
Chr10	irgsp1_rep	CDS	23091590	23091742	.	-	1	Parent=Os10t0579100-01
Chr10	irgsp1_rep	CDS	23091280	23091415	.	-	1	Parent=Os10t0579100-01
Chr10	irgsp1_rep	CDS	23090929	23091030	.	-	0	Parent=Os10t0579100-01
Chr10	irgsp1_rep	CDS	23090655	23090774	.	-	0	Parent=Os10t0579100-01
Chr10	irgsp1_rep	CDS	23090450	23090530	.	-	0	Parent=Os10t0579100-01
Chr10	irgsp1_rep	CDS	23089956	23090296	.	-	0	Parent=Os10t0579100-01
Chr10	irgsp1_rep	CDS	23089619	23089864	.	-	1	Parent=Os10t0579100-01
Chr10	irgsp1_rep	CDS	23089167	23089491	.	-	1	Parent=Os10t0579100-01
Chr10	irgsp1_rep	CDS	23088816	23089049	.	-	0	Parent=Os10t0579100-01
Chr10	irgsp1_rep	CDS	23088317	23088709	.	-	0	Parent=Os10t0579100-01
Chr10	irgsp1_rep	three_prime_UTR	23088168	23088316	.	-	.	Parent=Os10t0579100-01
Chr10	irgsp1_rep	mRNA	23089311	23089549	.	+	.	ID=Os10t0579150-00;Name=Os10t0579150-00;Locus_id=Os10g0579150;Note=Hypothetical gene.;Transcript_evidence=EU951391 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0579150-00
Chr10	irgsp1_rep	CDS	23089311	23089549	.	+	0	Parent=Os10t0579150-00
Chr10	irgsp1_rep	mRNA	23095290	23099697	.	-	.	ID=Os10t0579200-01;Name=Os10t0579200-01;Locus_id=Os10g0579200;Note=Sugar/inositol transporter domain containing protein.;Transcript_evidence=AK102009 (DDBJ%2C Best hit);ORF_evidence=XP_002873804.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J033079P13;Expression=AK102009;TENOR=Os10t0579200-01;KEGG=Os10t0579200-01
Chr10	irgsp1_rep	five_prime_UTR	23099604	23099697	.	-	.	Parent=Os10t0579200-01
Chr10	irgsp1_rep	CDS	23099562	23099603	.	-	0	Parent=Os10t0579200-01
Chr10	irgsp1_rep	CDS	23099353	23099459	.	-	0	Parent=Os10t0579200-01
Chr10	irgsp1_rep	CDS	23099197	23099275	.	-	1	Parent=Os10t0579200-01
Chr10	irgsp1_rep	CDS	23099047	23099106	.	-	0	Parent=Os10t0579200-01
Chr10	irgsp1_rep	CDS	23098880	23098946	.	-	0	Parent=Os10t0579200-01
Chr10	irgsp1_rep	CDS	23098670	23098794	.	-	2	Parent=Os10t0579200-01
Chr10	irgsp1_rep	CDS	23098462	23098563	.	-	0	Parent=Os10t0579200-01
Chr10	irgsp1_rep	CDS	23098002	23098370	.	-	0	Parent=Os10t0579200-01
Chr10	irgsp1_rep	CDS	23097853	23097900	.	-	0	Parent=Os10t0579200-01
Chr10	irgsp1_rep	CDS	23097551	23097613	.	-	0	Parent=Os10t0579200-01
Chr10	irgsp1_rep	CDS	23096661	23096741	.	-	0	Parent=Os10t0579200-01
Chr10	irgsp1_rep	CDS	23096166	23096264	.	-	0	Parent=Os10t0579200-01
Chr10	irgsp1_rep	CDS	23095896	23096033	.	-	0	Parent=Os10t0579200-01
Chr10	irgsp1_rep	CDS	23095661	23095789	.	-	0	Parent=Os10t0579200-01
Chr10	irgsp1_rep	three_prime_UTR	23095290	23095660	.	-	.	Parent=Os10t0579200-01
Chr10	irgsp1_rep	mRNA	23095653	23099461	.	+	.	ID=Os10t0579250-00;Name=Os10t0579250-00;Locus_id=Os10g0579250;Note=Hypothetical protein.;Transcript_evidence=tplb0042n15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0579250-00
Chr10	irgsp1_rep	five_prime_UTR	23095653	23095712	.	+	.	Parent=Os10t0579250-00
Chr10	irgsp1_rep	CDS	23095713	23095799	.	+	0	Parent=Os10t0579250-00
Chr10	irgsp1_rep	CDS	23095909	23096030	.	+	0	Parent=Os10t0579250-00
Chr10	irgsp1_rep	CDS	23096163	23096172	.	+	1	Parent=Os10t0579250-00
Chr10	irgsp1_rep	three_prime_UTR	23096173	23096263	.	+	.	Parent=Os10t0579250-00
Chr10	irgsp1_rep	three_prime_UTR	23096660	23096730	.	+	.	Parent=Os10t0579250-00
Chr10	irgsp1_rep	three_prime_UTR	23097541	23097613	.	+	.	Parent=Os10t0579250-00
Chr10	irgsp1_rep	three_prime_UTR	23097853	23097895	.	+	.	Parent=Os10t0579250-00
Chr10	irgsp1_rep	three_prime_UTR	23097997	23098370	.	+	.	Parent=Os10t0579250-00
Chr10	irgsp1_rep	three_prime_UTR	23098462	23098562	.	+	.	Parent=Os10t0579250-00
Chr10	irgsp1_rep	three_prime_UTR	23098669	23098791	.	+	.	Parent=Os10t0579250-00
Chr10	irgsp1_rep	three_prime_UTR	23098878	23098933	.	+	.	Parent=Os10t0579250-00
Chr10	irgsp1_rep	three_prime_UTR	23099033	23099098	.	+	.	Parent=Os10t0579250-00
Chr10	irgsp1_rep	three_prime_UTR	23099187	23099275	.	+	.	Parent=Os10t0579250-00
Chr10	irgsp1_rep	three_prime_UTR	23099353	23099461	.	+	.	Parent=Os10t0579250-00
Chr10	irgsp1_rep	mRNA	23100368	23103259	.	-	.	ID=Os10t0579300-01;Name=Os10t0579300-01;Locus_id=Os10g0579300;Note=NADH:ubiquinone oxidoreductase 17.2 kD subunit family protein.;Transcript_evidence=AK103692 (DDBJ%2C Best hit);ORF_evidence=NP_566192.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020),Molecular Function: NADH dehydrogenase (ubiquinone) activity (GO:0008137),Molecular Function: electron carrier activity (GO:0009055);InterPro=NADH:ubiquinone oxidoreductase%2C 17.2kDa subunit (IPR007763);NIAS_FLcDNA=J033136H20;Expression=AK103692;TENOR=Os10t0579300-01;KEGG=Os10t0579300-01 (EC:1.6.5.3%2C EC:1.6.99.3)
Chr10	irgsp1_rep	five_prime_UTR	23103198	23103259	.	-	.	Parent=Os10t0579300-01
Chr10	irgsp1_rep	CDS	23103109	23103197	.	-	0	Parent=Os10t0579300-01
Chr10	irgsp1_rep	CDS	23102787	23102813	.	-	1	Parent=Os10t0579300-01
Chr10	irgsp1_rep	CDS	23102571	23102662	.	-	1	Parent=Os10t0579300-01
Chr10	irgsp1_rep	CDS	23102147	23102256	.	-	2	Parent=Os10t0579300-01
Chr10	irgsp1_rep	CDS	23100610	23100774	.	-	0	Parent=Os10t0579300-01
Chr10	irgsp1_rep	three_prime_UTR	23100368	23100609	.	-	.	Parent=Os10t0579300-01
Chr10	irgsp1_rep	mRNA	23107517	23108620	.	+	.	ID=Os10t0579400-01;Name=Os10t0579400-01;Locus_id=Os10g0579400;CGSNL Gene Symbol=WRKY2;CGSNL Gene Name=RICE WRKY GENE2;Oryzabase Gene Symbol Synonym(s)=OsWRKY2;Oryzabase Gene Name Synonym(s)=Rice WRKY gene2;Note=Conserved hypothetical protein.;Transcript_evidence=AK108346 (DDBJ%2C Best hit);ORF_evidence=Q9FRP5 (UniProt);NIAS_FLcDNA=002-142-B07;Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6531;TENOR=Os10t0579400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	23107517	23107517	.	+	.	Parent=Os10t0579400-01
Chr10	irgsp1_rep	CDS	23107518	23107644	.	+	0	Parent=Os10t0579400-01
Chr10	irgsp1_rep	CDS	23107956	23108362	.	+	2	Parent=Os10t0579400-01
Chr10	irgsp1_rep	three_prime_UTR	23108363	23108620	.	+	.	Parent=Os10t0579400-01
Chr10	irgsp1_rep	mRNA	23112003	23113801	.	-	.	ID=Os10t0579500-01;Name=Os10t0579500-01;Locus_id=Os10g0579500;Note=Similar to ribosomal protein L35 containing protein.;Transcript_evidence=AK121742 (DDBJ%2C Best hit);ORF_evidence=NP_001149648.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L35%2C non-mitochondrial (IPR001706),Ribosomal protein L35 (IPR021137);NIAS_FLcDNA=J033086A17;TENOR=Os10t0579500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	23113626	23113801	.	-	.	Parent=Os10t0579500-01
Chr10	irgsp1_rep	CDS	23113516	23113625	.	-	0	Parent=Os10t0579500-01
Chr10	irgsp1_rep	CDS	23113349	23113433	.	-	1	Parent=Os10t0579500-01
Chr10	irgsp1_rep	CDS	23112228	23112317	.	-	0	Parent=Os10t0579500-01
Chr10	irgsp1_rep	three_prime_UTR	23112003	23112227	.	-	.	Parent=Os10t0579500-01
Chr10	irgsp1_rep	mRNA	23114698	23117665	.	+	.	ID=Os10t0579600-01;Name=Os10t0579600-01;Locus_id=Os10g0579600;RAP-DB Gene Symbol Synonym(s)=OsNPF7.7%2C OsNPF7.7-1%2C OsPTR10;Oryzabase Gene Symbol Synonym(s)=OsPTR10%2C PTR10%2C OsNPF7.7%2C NPF7.7%2C OsNPF7.7-1%2C OsNPF7.7-2;Oryzabase Gene Name Synonym(s)=NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 7.7%2C PROTEIN TRANSPORTER 10;Note=Nitrate and peptide transporters family (NPF) member%2C Regulation of shoot branching and nitrogen utilization efficiency;Transcript_evidence=AK099219,AK070527,AK099267,AK105726;ORF_evidence=Q7XBS8;GO=Biological Process: oligopeptide transport (GO:0006857),Biological Process: transmembrane transport (GO:0055085),Molecular Function: transmembrane transporter activity (GO:0022857),Cellular Component: membrane (GO:0016020);InterPro=MFS transporter superfamily (IPR036259),Proton-dependent oligopeptide transporter family (IPR000109),PTR2 family proton/oligopeptide symporter%2C conserved site (IPR018456);NIAS_FLcDNA=J013086I05,J023060H09,J023018P15,001-201-G10;Manual Curation=December 5%2C 2019;Literature_PMID=29568307;Oryzabase=22400;Expression=AK099219;TENOR=Os10t0579600-01;KEGG=Os10t0579600-01;Subcellular location=plasma membrane (GO:0005886)
Chr10	irgsp1_rep	five_prime_UTR	23114698	23114799	.	+	.	Parent=Os10t0579600-01
Chr10	irgsp1_rep	CDS	23114800	23114847	.	+	0	Parent=Os10t0579600-01
Chr10	irgsp1_rep	CDS	23115091	23115157	.	+	0	Parent=Os10t0579600-01
Chr10	irgsp1_rep	CDS	23115434	23115651	.	+	2	Parent=Os10t0579600-01
Chr10	irgsp1_rep	CDS	23115806	23116362	.	+	0	Parent=Os10t0579600-01
Chr10	irgsp1_rep	CDS	23116779	23117598	.	+	1	Parent=Os10t0579600-01
Chr10	irgsp1_rep	three_prime_UTR	23117599	23117665	.	+	.	Parent=Os10t0579600-01
Chr10	irgsp1_rep	mRNA	23114698	23117741	.	+	.	ID=Os10t0579600-02;Name=Os10t0579600-02;Locus_id=Os10g0579600;RAP-DB Gene Symbol Synonym(s)=OsNPF7.7%2C OsNPF7.7-2%2C OsPTR10;Oryzabase Gene Symbol Synonym(s)=OsPTR10%2C PTR10%2C OsNPF7.7%2C NPF7.7%2C OsNPF7.7-1%2C OsNPF7.7-2;Oryzabase Gene Name Synonym(s)=NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 7.7%2C PROTEIN TRANSPORTER 10;Note=Nitrate and peptide transporters family (NPF) member%2C Regulation of shoot branching and nitrogen utilization efficiency;Transcript_evidence=Inferred from literature;ORF_evidence=Q336M5;GO=Biological Process: transmembrane transport (GO:0055085),Molecular Function: transmembrane transporter activity (GO:0022857),Cellular Component: membrane (GO:0016020);InterPro=MFS transporter superfamily (IPR036259),Proton-dependent oligopeptide transporter family (IPR000109);Manual Curation=December 6%2C 2019;Literature_PMID=29568307;Oryzabase=22400;Subcellular location=vacuolar membrane (GO:0005774)
Chr10	irgsp1_rep	five_prime_UTR	23114698	23114847	.	+	.	Parent=Os10t0579600-02
Chr10	irgsp1_rep	five_prime_UTR	23115091	23115157	.	+	.	Parent=Os10t0579600-02
Chr10	irgsp1_rep	five_prime_UTR	23115434	23115754	.	+	.	Parent=Os10t0579600-02
Chr10	irgsp1_rep	CDS	23115755	23116362	.	+	0	Parent=Os10t0579600-02
Chr10	irgsp1_rep	CDS	23116779	23117598	.	+	1	Parent=Os10t0579600-02
Chr10	irgsp1_rep	three_prime_UTR	23117599	23117741	.	+	.	Parent=Os10t0579600-02
Chr10	irgsp1_rep	mRNA	23128998	23131238	.	+	.	ID=Os10t0579800-01;Name=Os10t0579800-01;Locus_id=Os10g0579800;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=TGF-beta receptor%2C type I/II extracellular region family protein.;Transcript_evidence=AK121847 (DDBJ%2C Best hit);ORF_evidence=NP_001148010.1 (RefSeq);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J033101J24;Oryzabase=23688;Expression=AK121847;TENOR=Os10t0579800-01;KEGG=Os10t0579800-01
Chr10	irgsp1_rep	five_prime_UTR	23128998	23129232	.	+	.	Parent=Os10t0579800-01
Chr10	irgsp1_rep	CDS	23129233	23129553	.	+	0	Parent=Os10t0579800-01
Chr10	irgsp1_rep	CDS	23129638	23131032	.	+	0	Parent=Os10t0579800-01
Chr10	irgsp1_rep	three_prime_UTR	23131033	23131238	.	+	.	Parent=Os10t0579800-01
Chr10	irgsp1_rep	mRNA	23129162	23131939	.	+	.	ID=Os10t0579800-02;Name=Os10t0579800-02;Locus_id=Os10g0579800;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=TGF-beta receptor%2C type I/II extracellular region family protein.;Transcript_evidence=AK066937 (DDBJ%2C Best hit);ORF_evidence=NP_001148010.1 (RefSeq);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J013092G19;Oryzabase=23688;Expression=AK066937;TENOR=Os10t0579800-02;KEGG=Os10t0579800-02
Chr10	irgsp1_rep	five_prime_UTR	23129162	23129232	.	+	.	Parent=Os10t0579800-02
Chr10	irgsp1_rep	CDS	23129233	23129553	.	+	0	Parent=Os10t0579800-02
Chr10	irgsp1_rep	CDS	23129638	23131032	.	+	0	Parent=Os10t0579800-02
Chr10	irgsp1_rep	three_prime_UTR	23131033	23131939	.	+	.	Parent=Os10t0579800-02
Chr10	irgsp1_rep	mRNA	23129296	23131002	.	-	.	ID=Os10t0579850-00;Name=Os10t0579850-00;Locus_id=Os10g0579850;Note=Hypothetical protein.;Transcript_evidence=tplb0038k08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os10t0579850-00
Chr10	irgsp1_rep	CDS	23130226	23131002	.	-	0	Parent=Os10t0579850-00
Chr10	irgsp1_rep	three_prime_UTR	23129619	23130225	.	-	.	Parent=Os10t0579850-00
Chr10	irgsp1_rep	three_prime_UTR	23129296	23129547	.	-	.	Parent=Os10t0579850-00
Chr10	irgsp1_rep	mRNA	23139419	23144763	.	+	.	ID=Os10t0579900-00;Name=Os10t0579900-00;Locus_id=Os10g0579900;Note=Hypothetical conserved gene.;Transcript_evidence=CT835787 (DDBJ%2C Best hit);ORF_evidence=B9G773 (UniProt);TENOR=Os10t0579900-00;KEGG=Os10t0579900-00
Chr10	irgsp1_rep	five_prime_UTR	23139419	23139587	.	+	.	Parent=Os10t0579900-00
Chr10	irgsp1_rep	five_prime_UTR	23140720	23140755	.	+	.	Parent=Os10t0579900-00
Chr10	irgsp1_rep	CDS	23140756	23140838	.	+	0	Parent=Os10t0579900-00
Chr10	irgsp1_rep	CDS	23144340	23144394	.	+	1	Parent=Os10t0579900-00
Chr10	irgsp1_rep	three_prime_UTR	23144395	23144763	.	+	.	Parent=Os10t0579900-00
Chr10	irgsp1_rep	mRNA	23142740	23144221	.	+	.	ID=Os10t0580001-01;Name=Os10t0580001-01;Locus_id=Os10g0580001;Note=Hypothetical gene.;Transcript_evidence=AK287554 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065019A09;TENOR=Os10t0580001-01;KEGG=Os10t0580001-01
Chr10	irgsp1_rep	five_prime_UTR	23142740	23143000	.	+	.	Parent=Os10t0580001-01
Chr10	irgsp1_rep	CDS	23143001	23143243	.	+	0	Parent=Os10t0580001-01
Chr10	irgsp1_rep	three_prime_UTR	23143244	23143342	.	+	.	Parent=Os10t0580001-01
Chr10	irgsp1_rep	three_prime_UTR	23143440	23143507	.	+	.	Parent=Os10t0580001-01
Chr10	irgsp1_rep	three_prime_UTR	23143643	23143822	.	+	.	Parent=Os10t0580001-01
Chr10	irgsp1_rep	three_prime_UTR	23143950	23144221	.	+	.	Parent=Os10t0580001-01
Chr10	irgsp1_rep	mRNA	23146494	23148598	.	+	.	ID=Os10t0580200-01;Name=Os10t0580200-01;Locus_id=Os10g0580200;CGSNL Gene Symbol=ARFB1C;CGSNL Gene Name=ADP-RIBOSYLATION FACTOR B1C;Oryzabase Gene Symbol Synonym(s)=OsARFB1c%2C ARFB1c;Oryzabase Gene Name Synonym(s)=ADP-ribosylation factor B1c;Note=Similar to ADP-ribosylation factor-like protein.;Transcript_evidence=AK068771 (DDBJ%2C Best hit);ORF_evidence=B6TGE5 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: small GTPase mediated signal transduction (GO:0007264),Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C SAR1-type (IPR006687),Small GTPase superfamily%2C ARF/SAR type (IPR006689),Small GTPase superfamily%2C ARF type (IPR024156);NIAS_FLcDNA=J013162J02;Oryzabase=21009;Expression=AK068771;TENOR=Os10t0580200-01;KEGG=Os10t0580200-01
Chr10	irgsp1_rep	five_prime_UTR	23146494	23146642	.	+	.	Parent=Os10t0580200-01
Chr10	irgsp1_rep	CDS	23146643	23146699	.	+	0	Parent=Os10t0580200-01
Chr10	irgsp1_rep	CDS	23146785	23146875	.	+	0	Parent=Os10t0580200-01
Chr10	irgsp1_rep	CDS	23146982	23147097	.	+	2	Parent=Os10t0580200-01
Chr10	irgsp1_rep	CDS	23147416	23147475	.	+	0	Parent=Os10t0580200-01
Chr10	irgsp1_rep	CDS	23147585	23147650	.	+	0	Parent=Os10t0580200-01
Chr10	irgsp1_rep	CDS	23148107	23148295	.	+	0	Parent=Os10t0580200-01
Chr10	irgsp1_rep	three_prime_UTR	23148296	23148598	.	+	.	Parent=Os10t0580200-01
Chr10	irgsp1_rep	mRNA	23146542	23148630	.	+	.	ID=Os10t0580200-02;Name=Os10t0580200-02;Locus_id=Os10g0580200;CGSNL Gene Symbol=ARFB1C;CGSNL Gene Name=ADP-RIBOSYLATION FACTOR B1C;Oryzabase Gene Symbol Synonym(s)=OsARFB1c%2C ARFB1c;Oryzabase Gene Name Synonym(s)=ADP-ribosylation factor B1c;Note=Similar to ADP-ribosylation factor-like protein.;Transcript_evidence=AK070151 (DDBJ%2C Best hit);ORF_evidence=B6TGE5 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: small GTPase mediated signal transduction (GO:0007264),Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C SAR1-type (IPR006687),Small GTPase superfamily%2C ARF/SAR type (IPR006689),Small GTPase superfamily%2C ARF type (IPR024156);NIAS_FLcDNA=J023044N16;Oryzabase=21009;Expression=AK070151;TENOR=Os10t0580200-02;KEGG=Os10t0580200-02
Chr10	irgsp1_rep	five_prime_UTR	23146542	23146642	.	+	.	Parent=Os10t0580200-02
Chr10	irgsp1_rep	CDS	23146643	23146699	.	+	0	Parent=Os10t0580200-02
Chr10	irgsp1_rep	CDS	23146785	23146875	.	+	0	Parent=Os10t0580200-02
Chr10	irgsp1_rep	CDS	23146982	23147097	.	+	2	Parent=Os10t0580200-02
Chr10	irgsp1_rep	CDS	23147416	23147475	.	+	0	Parent=Os10t0580200-02
Chr10	irgsp1_rep	CDS	23147585	23147650	.	+	0	Parent=Os10t0580200-02
Chr10	irgsp1_rep	CDS	23148107	23148295	.	+	0	Parent=Os10t0580200-02
Chr10	irgsp1_rep	three_prime_UTR	23148296	23148630	.	+	.	Parent=Os10t0580200-02
Chr10	irgsp1_rep	mRNA	23146627	23148269	.	-	.	ID=Os10t0580250-00;Name=Os10t0580250-00;Locus_id=Os10g0580250;Note=Non-protein coding transcript.;Transcript_evidence=BT016330 (DDBJ);ORF_evidence=NONE;TENOR=Os10t0580250-00
Chr10	irgsp1_rep	exon	23148121	23148269	.	-	.	Parent=Os10t0580250-00
Chr10	irgsp1_rep	exon	23147532	23147665	.	-	.	Parent=Os10t0580250-00
Chr10	irgsp1_rep	exon	23146990	23147101	.	-	.	Parent=Os10t0580250-00
Chr10	irgsp1_rep	exon	23146784	23146884	.	-	.	Parent=Os10t0580250-00
Chr10	irgsp1_rep	exon	23146627	23146698	.	-	.	Parent=Os10t0580250-00
Chr10	irgsp1_rep	mRNA	23148893	23153234	.	-	.	ID=Os10t0580300-01;Name=Os10t0580300-01;Locus_id=Os10g0580300;CGSNL Gene Symbol=CDKE%3B1;CGSNL Gene Name=CYCLIN-DEPENDENT KINASE E%3B1;Oryzabase Gene Symbol Synonym(s)=CDKE%3B1%2C Orysa%3BCDKE%3B1%2C OsCdk8_1%2C Cdk8_1;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK066824 (DDBJ%2C Best hit),AK104880 (DDBJ%2C Best hit);ORF_evidence=Q336M2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013075I07,001-044-G04;Oryzabase=13294;TENOR=Os10t0580300-01
Chr10	irgsp1_rep	five_prime_UTR	23153173	23153234	.	-	.	Parent=Os10t0580300-01
Chr10	irgsp1_rep	CDS	23152936	23153172	.	-	0	Parent=Os10t0580300-01
Chr10	irgsp1_rep	CDS	23152741	23152851	.	-	0	Parent=Os10t0580300-01
Chr10	irgsp1_rep	CDS	23152532	23152635	.	-	0	Parent=Os10t0580300-01
Chr10	irgsp1_rep	CDS	23152343	23152385	.	-	1	Parent=Os10t0580300-01
Chr10	irgsp1_rep	CDS	23152156	23152254	.	-	0	Parent=Os10t0580300-01
Chr10	irgsp1_rep	CDS	23151865	23151934	.	-	0	Parent=Os10t0580300-01
Chr10	irgsp1_rep	CDS	23151685	23151779	.	-	2	Parent=Os10t0580300-01
Chr10	irgsp1_rep	CDS	23151358	23151391	.	-	0	Parent=Os10t0580300-01
Chr10	irgsp1_rep	CDS	23151180	23151264	.	-	2	Parent=Os10t0580300-01
Chr10	irgsp1_rep	CDS	23151017	23151094	.	-	1	Parent=Os10t0580300-01
Chr10	irgsp1_rep	CDS	23150847	23150894	.	-	1	Parent=Os10t0580300-01
Chr10	irgsp1_rep	CDS	23149928	23149960	.	-	1	Parent=Os10t0580300-01
Chr10	irgsp1_rep	CDS	23149706	23149814	.	-	1	Parent=Os10t0580300-01
Chr10	irgsp1_rep	CDS	23149187	23149393	.	-	0	Parent=Os10t0580300-01
Chr10	irgsp1_rep	CDS	23149023	23149097	.	-	0	Parent=Os10t0580300-01
Chr10	irgsp1_rep	three_prime_UTR	23148893	23149022	.	-	.	Parent=Os10t0580300-01
Chr10	irgsp1_rep	mRNA	23156882	23159586	.	+	.	ID=Os10t0580400-01;Name=Os10t0580400-01;Locus_id=Os10g0580400;RAP-DB Gene Symbol Synonym(s)=OsDUR3;RAP-DB Gene Name Synonym(s)=high-affinity urea transporter OsDUR3;Oryzabase Gene Symbol Synonym(s)=OsDUR3%2C DUR3;Oryzabase Gene Name Synonym(s)=high-affinity urea transporter OsDUR3;Note=High-affinity urea transporter%2C Effective urea acquisition and utilisation%2C Effective use of low external urea as a N source;Transcript_evidence=AK070459;ORF_evidence=Q7XBS0;GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Biological Process: urea transmembrane transport (GO:0071918),Molecular Function: transporter activity (GO:0005215),Molecular Function: urea transmembrane transporter activity (GO:0015204),Cellular Component: membrane (GO:0016020),Cellular Component: integral component of membrane (GO:0016021);InterPro=Sodium/solute symporter (IPR001734),Urea active transporter (IPR031155);NIAS_FLcDNA=J023050G05;Manual Curation=May 10%2C 2017;Literature_PMID=22010949;Oryzabase=11818;Expression=AK070459;TENOR=Os10t0580400-01;KEGG=Os10t0580400-01;Subcellular location=plasma membrane (GO:0005886)
Chr10	irgsp1_rep	five_prime_UTR	23156882	23156983	.	+	.	Parent=Os10t0580400-01
Chr10	irgsp1_rep	CDS	23156984	23157166	.	+	0	Parent=Os10t0580400-01
Chr10	irgsp1_rep	CDS	23157282	23158052	.	+	0	Parent=Os10t0580400-01
Chr10	irgsp1_rep	CDS	23158130	23159341	.	+	0	Parent=Os10t0580400-01
Chr10	irgsp1_rep	three_prime_UTR	23159342	23159586	.	+	.	Parent=Os10t0580400-01
Chr10	irgsp1_rep	mRNA	23160823	23184731	.	-	.	ID=Os10t0580500-00;Name=Os10t0580500-00;Locus_id=Os10g0580500;Note=Essential protein Yae1%2C N-terminal domain containing protein.;Transcript_evidence=CT837648 (DDBJ%2C Best hit);ORF_evidence=NP_001045408.2 (RefSeq);InterPro=Essential protein Yae1%2C N-terminal (IPR019191);TENOR=Os10t0580500-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	23184516	23184731	.	-	.	Parent=Os10t0580500-00
Chr10	irgsp1_rep	CDS	23184423	23184515	.	-	0	Parent=Os10t0580500-00
Chr10	irgsp1_rep	CDS	23184369	23184411	.	-	0	Parent=Os10t0580500-00
Chr10	irgsp1_rep	CDS	23168251	23168334	.	-	2	Parent=Os10t0580500-00
Chr10	irgsp1_rep	CDS	23162223	23162252	.	-	2	Parent=Os10t0580500-00
Chr10	irgsp1_rep	CDS	23161893	23162014	.	-	2	Parent=Os10t0580500-00
Chr10	irgsp1_rep	CDS	23161594	23161715	.	-	0	Parent=Os10t0580500-00
Chr10	irgsp1_rep	CDS	23161312	23161495	.	-	1	Parent=Os10t0580500-00
Chr10	irgsp1_rep	three_prime_UTR	23160823	23161311	.	-	.	Parent=Os10t0580500-00
Chr10	irgsp1_rep	mRNA	23163182	23169086	.	+	.	ID=Os10t0580550-01;Name=Os10t0580550-01;Locus_id=Os10g0580550;Note=Hypothetical protein.;Transcript_evidence=AK289108 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090096M08;TENOR=Os10t0580550-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	23163182	23164969	.	+	.	Parent=Os10t0580550-01
Chr10	irgsp1_rep	CDS	23164970	23165467	.	+	0	Parent=Os10t0580550-01
Chr10	irgsp1_rep	three_prime_UTR	23165468	23169086	.	+	.	Parent=Os10t0580550-01
Chr10	irgsp1_rep	mRNA	23185174	23186725	.	-	.	ID=Os10t0580600-00;Name=Os10t0580600-00;Locus_id=Os10g0580600;Note=Protein of unknown function DUF1997 domain containing protein.;Transcript_evidence=AK370224 (DDBJ);ORF_evidence=Q9FRM6 (UniProt);InterPro=Protein of unknown function DUF1997 (IPR018971);TENOR=Os10t0580600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	CDS	23186505	23186725	.	-	0	Parent=Os10t0580600-00
Chr10	irgsp1_rep	CDS	23185602	23185713	.	-	1	Parent=Os10t0580600-00
Chr10	irgsp1_rep	CDS	23185354	23185506	.	-	0	Parent=Os10t0580600-00
Chr10	irgsp1_rep	three_prime_UTR	23185313	23185353	.	-	.	Parent=Os10t0580600-00
Chr10	irgsp1_rep	three_prime_UTR	23185174	23185259	.	-	.	Parent=Os10t0580600-00
Chr10	irgsp1_rep	mRNA	23186433	23189470	.	+	.	ID=Os10t0580700-01;Name=Os10t0580700-01;Locus_id=Os10g0580700;Oryzabase Gene Symbol Synonym(s)=NALP1;Oryzabase Gene Name Synonym(s)=nuclear ankyrin like protein 1;Note=Ankyrin repeat containing protein.;Transcript_evidence=AK071604 (DDBJ%2C Best hit);ORF_evidence=NP_193650.2 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J023099C19;Oryzabase=16047;Expression=AK071604;TENOR=Os10t0580700-01;KEGG=Os10t0580700-01
Chr10	irgsp1_rep	five_prime_UTR	23186433	23186489	.	+	.	Parent=Os10t0580700-01
Chr10	irgsp1_rep	CDS	23186490	23186683	.	+	0	Parent=Os10t0580700-01
Chr10	irgsp1_rep	CDS	23188697	23189300	.	+	1	Parent=Os10t0580700-01
Chr10	irgsp1_rep	three_prime_UTR	23189301	23189470	.	+	.	Parent=Os10t0580700-01
Chr10	irgsp1_rep	mRNA	23190174	23191970	.	-	.	ID=Os10t0580750-00;Name=Os10t0580750-00;Locus_id=Os10g0580750;Note=Hypothetical gene.;Transcript_evidence=BT019171 (DDBJ);ORF_evidence=longestORF;TENOR=Os10t0580750-00;KEGG=Os10t0580750-00
Chr10	irgsp1_rep	five_prime_UTR	23191641	23191970	.	-	.	Parent=Os10t0580750-00
Chr10	irgsp1_rep	CDS	23191466	23191640	.	-	0	Parent=Os10t0580750-00
Chr10	irgsp1_rep	CDS	23190174	23190550	.	-	2	Parent=Os10t0580750-00
Chr10	irgsp1_rep	mRNA	23190161	23192200	.	+	.	ID=Os10t0580800-01;Name=Os10t0580800-01;Locus_id=Os10g0580800;CGSNL Gene Symbol=CLPP4;CGSNL Gene Name=CHLOROPLAST PROTEASE 4;Oryzabase Gene Symbol Synonym(s)=OsClpP4%2C ClpP4%2C OsClp11%2C CLP11;Oryzabase Gene Name Synonym(s)=plastidic caseinolytic protease 4%2C chloroplast Clp 4%2C Clp protease 11;Note=Similar to NClpP4 (Fragment).;Transcript_evidence=AK104823 (DDBJ%2C Best hit),AK065306 (DDBJ%2C Best hit),AK104396 (DDBJ%2C Best hit),AK104589 (DDBJ%2C Best hit),AK104666 (DDBJ%2C Best hit);ORF_evidence=B4FP39 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S14%2C ClpP (IPR001907),Peptidase S14%2C ClpP%2C active site (IPR018215),Peptidase S14/S49 (IPR023562);NIAS_FLcDNA=001-041-F03,J013002O07,006-202-C09,006-307-H06,006-312-A06;Oryzabase=13358;TENOR=Os10t0580800-01
Chr10	irgsp1_rep	five_prime_UTR	23190161	23190173	.	+	.	Parent=Os10t0580800-01
Chr10	irgsp1_rep	CDS	23190174	23190571	.	+	0	Parent=Os10t0580800-01
Chr10	irgsp1_rep	CDS	23191487	23191970	.	+	1	Parent=Os10t0580800-01
Chr10	irgsp1_rep	three_prime_UTR	23191971	23192200	.	+	.	Parent=Os10t0580800-01
Chr10	irgsp1_rep	mRNA	23192471	23194991	.	-	.	ID=Os10t0580900-01;Name=Os10t0580900-01;Locus_id=Os10g0580900;Oryzabase Gene Name Synonym(s)=Conserved hypothetical protein;Note=Conserved hypothetical protein.;Transcript_evidence=AK072734 (DDBJ%2C Best hit);ORF_evidence=Q9FRM3 (UniProt);NIAS_FLcDNA=J023141G14;Oryzabase=22045;Expression=AK072734;TENOR=Os10t0580900-01;KEGG=Os10t0580900-01
Chr10	irgsp1_rep	five_prime_UTR	23194864	23194991	.	-	.	Parent=Os10t0580900-01
Chr10	irgsp1_rep	five_prime_UTR	23194115	23194133	.	-	.	Parent=Os10t0580900-01
Chr10	irgsp1_rep	CDS	23193968	23194114	.	-	0	Parent=Os10t0580900-01
Chr10	irgsp1_rep	CDS	23193585	23193863	.	-	0	Parent=Os10t0580900-01
Chr10	irgsp1_rep	CDS	23192622	23193254	.	-	0	Parent=Os10t0580900-01
Chr10	irgsp1_rep	three_prime_UTR	23192471	23192621	.	-	.	Parent=Os10t0580900-01
Chr10	irgsp1_rep	mRNA	23192525	23194969	.	-	.	ID=Os10t0580900-02;Name=Os10t0580900-02;Locus_id=Os10g0580900;Oryzabase Gene Name Synonym(s)=Conserved hypothetical protein;Note=Conserved hypothetical protein.;Transcript_evidence=AK104136 (DDBJ%2C Best hit);ORF_evidence=Q9FRM3 (UniProt);NIAS_FLcDNA=006-204-F07;Oryzabase=22045;Expression=AK104136;TENOR=Os10t0580900-02;KEGG=Os10t0580900-02
Chr10	irgsp1_rep	five_prime_UTR	23194864	23194969	.	-	.	Parent=Os10t0580900-02
Chr10	irgsp1_rep	five_prime_UTR	23194115	23194133	.	-	.	Parent=Os10t0580900-02
Chr10	irgsp1_rep	CDS	23193968	23194114	.	-	0	Parent=Os10t0580900-02
Chr10	irgsp1_rep	CDS	23193585	23193863	.	-	0	Parent=Os10t0580900-02
Chr10	irgsp1_rep	CDS	23192622	23193254	.	-	0	Parent=Os10t0580900-02
Chr10	irgsp1_rep	three_prime_UTR	23192525	23192621	.	-	.	Parent=Os10t0580900-02
Chr10	irgsp1_rep	mRNA	23194450	23194950	.	-	.	ID=Os10t0580900-03;Name=Os10t0580900-03;Locus_id=Os10g0580900;Oryzabase Gene Name Synonym(s)=Conserved hypothetical protein;Note=Non-protein coding transcript.;Transcript_evidence=AK062821 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-107-F02;Oryzabase=22045;TENOR=Os10t0580900-03
Chr10	irgsp1_rep	exon	23194450	23194950	.	-	.	Parent=Os10t0580900-03
Chr10	irgsp1_rep	mRNA	23195820	23198427	.	-	.	ID=Os10t0581000-01;Name=Os10t0581000-01;Locus_id=Os10g0581000;Note=Conserved hypothetical protein.;Transcript_evidence=AK242551 (DDBJ%2C Best hit);ORF_evidence=B9G779 (UniProt);NIAS_FLcDNA=J080319D18;TENOR=Os10t0581000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr10	irgsp1_rep	five_prime_UTR	23198427	23198427	.	-	.	Parent=Os10t0581000-01
Chr10	irgsp1_rep	CDS	23198364	23198426	.	-	0	Parent=Os10t0581000-01
Chr10	irgsp1_rep	CDS	23198176	23198281	.	-	0	Parent=Os10t0581000-01
Chr10	irgsp1_rep	CDS	23198035	23198098	.	-	2	Parent=Os10t0581000-01
Chr10	irgsp1_rep	CDS	23197245	23197373	.	-	1	Parent=Os10t0581000-01
Chr10	irgsp1_rep	CDS	23197040	23197157	.	-	1	Parent=Os10t0581000-01
Chr10	irgsp1_rep	CDS	23196477	23196553	.	-	0	Parent=Os10t0581000-01
Chr10	irgsp1_rep	CDS	23195971	23196346	.	-	1	Parent=Os10t0581000-01
Chr10	irgsp1_rep	three_prime_UTR	23195820	23195970	.	-	.	Parent=Os10t0581000-01
Chr11	irgsp1_rep	mRNA	1180	4230	.	-	.	ID=Os11t0100100-01;Name=Os11t0100100-01;Locus_id=Os11g0100100;CGSNL Gene Symbol=ATG8E;CGSNL Gene Name=AUTOPHAGY ASSOCIATED GENE 8E;Oryzabase Gene Symbol Synonym(s)=OsATG8e%2C OsATG8d%2C Atg8d;Oryzabase Gene Name Synonym(s)=autophagy 8e%2C OsAuTophaGy8d%2C AUTOPHAGY RELATED8d;Note=Similar to Autophagy-related protein 8D.;Transcript_evidence=AK240971 (DDBJ%2C Best hit);ORF_evidence=Q2RBS4 (UniProt);NIAS_FLcDNA=J065047F14;Oryzabase=9649;TENOR=Os11t0100100-01;KEGG=Os11t0100100-01
Chr11	irgsp1_rep	five_prime_UTR	4078	4230	.	-	.	Parent=Os11t0100100-01
Chr11	irgsp1_rep	CDS	4041	4077	.	-	0	Parent=Os11t0100100-01
Chr11	irgsp1_rep	CDS	3731	3945	.	-	2	Parent=Os11t0100100-01
Chr11	irgsp1_rep	three_prime_UTR	1974	3730	.	-	.	Parent=Os11t0100100-01
Chr11	irgsp1_rep	three_prime_UTR	1704	1756	.	-	.	Parent=Os11t0100100-01
Chr11	irgsp1_rep	three_prime_UTR	1515	1633	.	-	.	Parent=Os11t0100100-01
Chr11	irgsp1_rep	three_prime_UTR	1180	1427	.	-	.	Parent=Os11t0100100-01
Chr11	irgsp1_rep	mRNA	2049	2282	.	+	.	ID=Os11t0100150-00;Name=Os11t0100150-00;Locus_id=Os11g0100150;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q652R6 (UniProt);TENOR=Os11t0100150-00;KEGG=Os11t0100150-00
Chr11	irgsp1_rep	CDS	2049	2282	.	+	0	Parent=Os11t0100150-00
Chr11	irgsp1_rep	mRNA	3898	4289	.	+	.	ID=Os11t0100151-01;Name=Os11t0100151-01;Locus_id=Os11g0100151;Note=Non-protein coding transcript.;Transcript_evidence=AK288677 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090059F03;TENOR=Os11t0100151-01
Chr11	irgsp1_rep	exon	3898	4289	.	+	.	Parent=Os11t0100151-01
Chr11	irgsp1_rep	mRNA	4400	7050	.	+	.	ID=Os11t0100200-00;Name=Os11t0100200-00;Locus_id=Os11g0100200;Note=Similar to ALY protein.;Transcript_evidence=AK061492 (DDBJ%2C Secondary hit);ORF_evidence=NP_001065221.2 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);Expression=AK061492;TENOR=Os11t0100200-00;KEGG=Os11t0100200-00
Chr11	irgsp1_rep	five_prime_UTR	4400	4400	.	+	.	Parent=Os11t0100200-00
Chr11	irgsp1_rep	CDS	4401	4541	.	+	0	Parent=Os11t0100200-00
Chr11	irgsp1_rep	CDS	4619	4717	.	+	0	Parent=Os11t0100200-00
Chr11	irgsp1_rep	CDS	5114	5182	.	+	0	Parent=Os11t0100200-00
Chr11	irgsp1_rep	CDS	5275	5459	.	+	0	Parent=Os11t0100200-00
Chr11	irgsp1_rep	CDS	6545	6710	.	+	1	Parent=Os11t0100200-00
Chr11	irgsp1_rep	three_prime_UTR	6711	7050	.	+	.	Parent=Os11t0100200-00
Chr11	irgsp1_rep	mRNA	7041	10062	.	-	.	ID=Os11t0100300-00;Name=Os11t0100300-00;Locus_id=Os11g0100300;Note=Conserved hypothetical protein.;Transcript_evidence=AK369990 (DDBJ);ORF_evidence=NP_001176293.1 (RefSeq);TENOR=Os11t0100300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	9193	10062	.	-	0	Parent=Os11t0100300-00
Chr11	irgsp1_rep	CDS	7099	8766	.	-	0	Parent=Os11t0100300-00
Chr11	irgsp1_rep	three_prime_UTR	7041	7098	.	-	.	Parent=Os11t0100300-00
Chr11	irgsp1_rep	mRNA	14301	15796	.	-	.	ID=Os11t0100600-01;Name=Os11t0100600-01;Locus_id=Os11g0100600;Note=Alpha/beta hydrolase family protein.;Transcript_evidence=AK060331 (DDBJ%2C Best hit);ORF_evidence=B4FK75 (UniProt);InterPro=Alpha/beta hydrolase fold-1 (IPR000073),Alpha/beta hydrolase%2C N-terminal (IPR022742);NIAS_FLcDNA=001-008-B05;Expression=AK060331;TENOR=Os11t0100600-01;KEGG=Os11t0100600-01
Chr11	irgsp1_rep	five_prime_UTR	15715	15796	.	-	.	Parent=Os11t0100600-01
Chr11	irgsp1_rep	CDS	15274	15714	.	-	0	Parent=Os11t0100600-01
Chr11	irgsp1_rep	CDS	14421	14978	.	-	0	Parent=Os11t0100600-01
Chr11	irgsp1_rep	three_prime_UTR	14301	14420	.	-	.	Parent=Os11t0100600-01
Chr11	irgsp1_rep	mRNA	27030	28636	.	-	.	ID=Os11t0100800-01;Name=Os11t0100800-01;Locus_id=Os11g0100800;CGSNL Gene Symbol=EXO70H3B;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H3B;Oryzabase Gene Symbol Synonym(s)=OsEXO70H3b%2C EXO70H3b%2C OsExo70H3b%2C OrysaH3b_Exo70;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein H3b;Note=Similar to Exo70 exocyst complex subunit family protein.;Transcript_evidence=AK287644 (DDBJ%2C Best hit);ORF_evidence=Q2RBS0 (UniProt);GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exo70 exocyst complex subunit (IPR004140),Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=J065090C09;Oryzabase=20341;TENOR=Os11t0100800-01;KEGG=Os11t0100800-01
Chr11	irgsp1_rep	five_prime_UTR	28633	28636	.	-	.	Parent=Os11t0100800-01
Chr11	irgsp1_rep	CDS	27139	28632	.	-	0	Parent=Os11t0100800-01
Chr11	irgsp1_rep	three_prime_UTR	27030	27138	.	-	.	Parent=Os11t0100800-01
Chr11	irgsp1_rep	mRNA	38621	44608	.	+	.	ID=Os11t0101200-01;Name=Os11t0101200-01;Locus_id=Os11g0101200;Oryzabase Gene Symbol Synonym(s)=OsCCT36%2C OsCMF12;Oryzabase Gene Name Synonym(s)=CCT domain-containing gene 36%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 36%2C CCT domain protein 36%2C CCT MOTIF FAMILY (CMF) gene 12;Note=Similar to RNase P subunit p30 family protein%2C expressed.;Transcript_evidence=AK064386 (DDBJ%2C Best hit);ORF_evidence=Q2RBR7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=CCT domain (IPR010402);NIAS_FLcDNA=002-108-E09;Oryzabase=19176;TENOR=Os11t0101200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	38621	39779	.	+	0	Parent=Os11t0101200-01
Chr11	irgsp1_rep	CDS	40119	40213	.	+	2	Parent=Os11t0101200-01
Chr11	irgsp1_rep	CDS	43938	44081	.	+	0	Parent=Os11t0101200-01
Chr11	irgsp1_rep	CDS	44174	44455	.	+	0	Parent=Os11t0101200-01
Chr11	irgsp1_rep	three_prime_UTR	44456	44608	.	+	.	Parent=Os11t0101200-01
Chr11	irgsp1_rep	mRNA	38990	40406	.	+	.	ID=Os11t0101200-02;Name=Os11t0101200-02;Locus_id=Os11g0101200;Oryzabase Gene Symbol Synonym(s)=OsCCT36%2C OsCMF12;Oryzabase Gene Name Synonym(s)=CCT domain-containing gene 36%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 36%2C CCT domain protein 36%2C CCT MOTIF FAMILY (CMF) gene 12;Note=Similar to RNase P subunit p30 family protein%2C expressed.;Transcript_evidence=AK058862 (DDBJ%2C Best hit);ORF_evidence=Q2RBR8 (UniProt);NIAS_FLcDNA=001-005-G05;Oryzabase=19176;TENOR=Os11t0101200-02
Chr11	irgsp1_rep	CDS	38990	39779	.	+	0	Parent=Os11t0101200-02
Chr11	irgsp1_rep	CDS	40119	40213	.	+	2	Parent=Os11t0101200-02
Chr11	irgsp1_rep	CDS	40309	40406	.	+	0	Parent=Os11t0101200-02
Chr11	irgsp1_rep	mRNA	41214	44550	.	+	.	ID=Os11t0101200-03;Name=Os11t0101200-03;Locus_id=Os11g0101200;Oryzabase Gene Symbol Synonym(s)=OsCCT36%2C OsCMF12;Oryzabase Gene Name Synonym(s)=CCT domain-containing gene 36%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 36%2C CCT domain protein 36%2C CCT MOTIF FAMILY (CMF) gene 12;Note=Similar to CCT motif family protein.;Transcript_evidence=AK100957 (DDBJ%2C Best hit);ORF_evidence=Q2QYZ4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=CCT domain (IPR010402);NIAS_FLcDNA=J023140H04;Oryzabase=19176;Expression=AK100957;TENOR=Os11t0101200-03;KEGG=Os11t0101200-03
Chr11	irgsp1_rep	five_prime_UTR	41214	43922	.	+	.	Parent=Os11t0101200-03
Chr11	irgsp1_rep	CDS	43923	44081	.	+	0	Parent=Os11t0101200-03
Chr11	irgsp1_rep	CDS	44174	44455	.	+	0	Parent=Os11t0101200-03
Chr11	irgsp1_rep	three_prime_UTR	44456	44550	.	+	.	Parent=Os11t0101200-03
Chr11	irgsp1_rep	mRNA	68344	70989	.	+	.	ID=Os11t0102100-01;Name=Os11t0102100-01;Locus_id=Os11g0102100;RAP-DB Gene Symbol Synonym(s)=NAL2%2C nal2%2C nal3%2C cul2%2C OsWOX3A%2C Os NS%2C NS%2C OsNS%2C OsWOX3%2C OsNS1/OsNS2%2C OsPRS;RAP-DB Gene Name Synonym(s)=NARROW LEAF 2%2C narrow leaf2%2C narrow leaf 2%2C narrow leaf-2%2C curl leaf-2%2C WUSCHEL related homeobox 3A%2C WUSCHEL-related homeobox 3A;CGSNL Gene Symbol=NAL2;CGSNL Gene Name=NARROW LEAF 2;Oryzabase Gene Symbol Synonym(s)=nal2%2C nal3%2C cul2%2C OsWOX3A%2C Os NS%2C NS%2C OsNS%2C OsWOX3%2C OsNS1/OsNS2%2C OsPRS;Oryzabase Gene Name Synonym(s)=narrow leaf2%2C narrow leaf 2%2C narrow leaf-2%2C curl leaf-2%2C WUSCHEL related homeobox 3A%2C WUSCHEL-related homeobox 3A;Note=WUS-type homenodomain protein%2C Leaf development;Transcript_evidence=AM490243 (Genbank);ORF_evidence=A8Y7W4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeodomain (IPR001356),Homeodomain-like (IPR009057);Manual Curation=August 2%2C 2009;Literature_PMID=17768306;Oryzabase=899;TENOR=Os11t0102100-00
Chr11	irgsp1_rep	CDS	68344	68924	.	+	0	Parent=Os11t0102100-01
Chr11	irgsp1_rep	CDS	70866	70989	.	+	1	Parent=Os11t0102100-01
Chr11	irgsp1_rep	mRNA	68344	68955	.	+	.	ID=Os11t0102100-02;Name=Os11t0102100-02;Locus_id=Os11g0102100;RAP-DB Gene Symbol Synonym(s)=WOX3%2C OsWOX3%2C OsNS%2C OsPRS;RAP-DB Gene Name Synonym(s)=WUSCHEL-LIKE HOMEOBOX 3%2C Rice Wuschel (WUS)-like homeobox 3;CGSNL Gene Symbol=NAL2;CGSNL Gene Name=NARROW LEAF 2;Oryzabase Gene Symbol Synonym(s)=nal2%2C nal3%2C cul2%2C OsWOX3A%2C Os NS%2C NS%2C OsNS%2C OsWOX3%2C OsNS1/OsNS2%2C OsPRS;Oryzabase Gene Name Synonym(s)=narrow leaf2%2C narrow leaf 2%2C narrow leaf-2%2C curl leaf-2%2C WUSCHEL related homeobox 3A%2C WUSCHEL-related homeobox 3A;Note=WUS-type homenodomain protein%2C Leaf development;Transcript_evidence=AB218893 (Genbank);ORF_evidence=Q33DK1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeodomain (IPR001356),Homeodomain-like (IPR009057);Manual Curation=August 2%2C 2009;Literature_PMID=16284419,17351053;Oryzabase=899
Chr11	irgsp1_rep	CDS	68344	68955	.	+	0	Parent=Os11t0102100-02
Chr11	irgsp1_rep	mRNA	79395	94104	.	+	.	ID=Os11t0102200-00;Name=Os11t0102200-00;Locus_id=Os11g0102200;Note=Similar to NPH1-1.;Transcript_evidence=AB018444 (DDBJ%2C Secondary hit);ORF_evidence=Q2RBR1 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: two-component sensor activity (GO:0000155),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=PAS (IPR000014),PAS-associated%2C C-terminal (IPR000700),Protein kinase%2C catalytic domain (IPR000719),PAC motif (IPR001610),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAS fold-3 (IPR013655),PAS fold (IPR013767),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os11t0102200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	79395	79455	.	+	.	Parent=Os11t0102200-00
Chr11	irgsp1_rep	five_prime_UTR	79473	79628	.	+	.	Parent=Os11t0102200-00
Chr11	irgsp1_rep	CDS	79629	79641	.	+	0	Parent=Os11t0102200-00
Chr11	irgsp1_rep	CDS	85559	86063	.	+	2	Parent=Os11t0102200-00
Chr11	irgsp1_rep	CDS	86136	86318	.	+	1	Parent=Os11t0102200-00
Chr11	irgsp1_rep	CDS	86419	86510	.	+	1	Parent=Os11t0102200-00
Chr11	irgsp1_rep	CDS	86628	86901	.	+	2	Parent=Os11t0102200-00
Chr11	irgsp1_rep	CDS	86977	87190	.	+	1	Parent=Os11t0102200-00
Chr11	irgsp1_rep	CDS	87295	87365	.	+	0	Parent=Os11t0102200-00
Chr11	irgsp1_rep	CDS	87540	87646	.	+	1	Parent=Os11t0102200-00
Chr11	irgsp1_rep	CDS	88104	88153	.	+	2	Parent=Os11t0102200-00
Chr11	irgsp1_rep	CDS	88262	88345	.	+	0	Parent=Os11t0102200-00
Chr11	irgsp1_rep	CDS	89197	89256	.	+	0	Parent=Os11t0102200-00
Chr11	irgsp1_rep	CDS	89333	89422	.	+	0	Parent=Os11t0102200-00
Chr11	irgsp1_rep	CDS	89961	90037	.	+	0	Parent=Os11t0102200-00
Chr11	irgsp1_rep	CDS	90160	90244	.	+	1	Parent=Os11t0102200-00
Chr11	irgsp1_rep	CDS	90362	90442	.	+	0	Parent=Os11t0102200-00
Chr11	irgsp1_rep	CDS	90630	90733	.	+	0	Parent=Os11t0102200-00
Chr11	irgsp1_rep	CDS	90931	90980	.	+	1	Parent=Os11t0102200-00
Chr11	irgsp1_rep	CDS	91764	91870	.	+	2	Parent=Os11t0102200-00
Chr11	irgsp1_rep	CDS	92743	92865	.	+	0	Parent=Os11t0102200-00
Chr11	irgsp1_rep	CDS	92978	93029	.	+	0	Parent=Os11t0102200-00
Chr11	irgsp1_rep	CDS	93230	93342	.	+	2	Parent=Os11t0102200-00
Chr11	irgsp1_rep	CDS	93404	93544	.	+	0	Parent=Os11t0102200-00
Chr11	irgsp1_rep	CDS	93656	93745	.	+	0	Parent=Os11t0102200-00
Chr11	irgsp1_rep	three_prime_UTR	93746	94104	.	+	.	Parent=Os11t0102200-00
Chr11	irgsp1_rep	mRNA	85656	86065	.	-	.	ID=Os11t0102301-00;Name=Os11t0102301-00;Locus_id=Os11g0102301;Note=Hypothetical gene.;Transcript_evidence=EU949907 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0102301-00;KEGG=Os11t0102301-00
Chr11	irgsp1_rep	five_prime_UTR	86025	86065	.	-	.	Parent=Os11t0102301-00
Chr11	irgsp1_rep	CDS	85656	86024	.	-	0	Parent=Os11t0102301-00
Chr11	irgsp1_rep	mRNA	99472	99889	.	+	.	ID=Os11t0102500-01;Name=Os11t0102500-01;Locus_id=Os11g0102500;Oryzabase Gene Name Synonym(s)=Trans-2-enoyl-CoA reductase;Note=Similar to predicted protein.;Transcript_evidence=AK059330 (DDBJ%2C Best hit);ORF_evidence=C5MRG3 (UniProt);NIAS_FLcDNA=001-026-A06;Oryzabase=20152;Expression=AK059330;TENOR=Os11t0102500-01;KEGG=Os11t0102500-01 (EC:1.3.1.38)
Chr11	irgsp1_rep	five_prime_UTR	99472	99472	.	+	.	Parent=Os11t0102500-01
Chr11	irgsp1_rep	CDS	99473	99565	.	+	0	Parent=Os11t0102500-01
Chr11	irgsp1_rep	three_prime_UTR	99566	99889	.	+	.	Parent=Os11t0102500-01
Chr11	irgsp1_rep	mRNA	100872	104097	.	+	.	ID=Os11t0102600-01;Name=Os11t0102600-01;Locus_id=Os11g0102600;Oryzabase Gene Symbol Synonym(s)=OsTON1b%2C TON1b;Oryzabase Gene Name Synonym(s)=TONNEAU1b%2C TONNEAU 1b;Note=LisH dimerisation motif domain containing protein.;Transcript_evidence=AK071448 (DDBJ%2C Best hit);ORF_evidence=Q9FQ22 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=LisH dimerisation motif (IPR006594);NIAS_FLcDNA=J023095M16;Oryzabase=19919;Expression=AK071448;TENOR=Os11t0102600-01;KEGG=Os11t0102600-01
Chr11	irgsp1_rep	five_prime_UTR	100872	101012	.	+	.	Parent=Os11t0102600-01
Chr11	irgsp1_rep	CDS	101013	101099	.	+	0	Parent=Os11t0102600-01
Chr11	irgsp1_rep	CDS	101640	101772	.	+	0	Parent=Os11t0102600-01
Chr11	irgsp1_rep	CDS	102090	102178	.	+	2	Parent=Os11t0102600-01
Chr11	irgsp1_rep	CDS	102279	102401	.	+	0	Parent=Os11t0102600-01
Chr11	irgsp1_rep	CDS	103171	103310	.	+	0	Parent=Os11t0102600-01
Chr11	irgsp1_rep	CDS	103398	103423	.	+	1	Parent=Os11t0102600-01
Chr11	irgsp1_rep	CDS	103501	103657	.	+	2	Parent=Os11t0102600-01
Chr11	irgsp1_rep	CDS	103739	103763	.	+	1	Parent=Os11t0102600-01
Chr11	irgsp1_rep	three_prime_UTR	103764	104097	.	+	.	Parent=Os11t0102600-01
Chr11	irgsp1_rep	mRNA	107236	108207	.	-	.	ID=Os11t0102700-01;Name=Os11t0102700-01;Locus_id=Os11g0102700;Oryzabase Gene Name Synonym(s)=SUMO protease protein;Note=Peptidase C48%2C SUMO/Sentrin/Ubl1 family protein.;Transcript_evidence=AK120376 (DDBJ%2C Best hit);ORF_evidence=Q6IEM4 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase C48%2C SUMO/Sentrin/Ubl1 (IPR003653);NIAS_FLcDNA=J013071J20;Oryzabase=20936;Expression=AK120376;TENOR=Os11t0102700-01;KEGG=Os11t0102700-01 (EC:3.4.22.-)
Chr11	irgsp1_rep	five_prime_UTR	108154	108207	.	-	.	Parent=Os11t0102700-01
Chr11	irgsp1_rep	CDS	107431	108153	.	-	0	Parent=Os11t0102700-01
Chr11	irgsp1_rep	three_prime_UTR	107236	107430	.	-	.	Parent=Os11t0102700-01
Chr11	irgsp1_rep	mRNA	110158	116986	.	+	.	ID=Os11t0102800-01;Name=Os11t0102800-01;Locus_id=Os11g0102800;RAP-DB Gene Symbol Synonym(s)=OsRINGC2-1;RAP-DB Gene Name Synonym(s)=Oryza sativa RING finger protein C2 type-1;Oryzabase Gene Symbol Synonym(s)=OsRINGC2-1%2C RINGC2-1;Oryzabase Gene Name Synonym(s)=RING-C2 type protein 1;Note=RING-C2 type protein%2C E3 ligase;Transcript_evidence=AB110174 (truncated),Inferred from literature;ORF_evidence=Inferred from literature;GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),RNA-binding domain superfamily (IPR035979),Nucleotide-binding alpha-beta plait domain superfamily (IPR012677),Zinc finger%2C RING-type (IPR001841),RNA recognition motif domain (IPR000504),CNOT4%2C RNA recognition motif (IPR034261),RNA recognition motif domain%2C eukaryote (IPR003954);Manual Curation=September 6%2C 2018;Literature_PMID=22705026;Oryzabase=11525;Expression=AB110174;TENOR=Os11t0102800-00;KEGG=Os11t0102800-00;Subcellular location=cytoplasm (GO:0005737) [punctate complex]
Chr11	irgsp1_rep	five_prime_UTR	110158	110394	.	+	.	Parent=Os11t0102800-01
Chr11	irgsp1_rep	CDS	110395	110396	.	+	0	Parent=Os11t0102800-01
Chr11	irgsp1_rep	CDS	110704	110803	.	+	1	Parent=Os11t0102800-01
Chr11	irgsp1_rep	CDS	110891	111018	.	+	0	Parent=Os11t0102800-01
Chr11	irgsp1_rep	CDS	111232	111394	.	+	1	Parent=Os11t0102800-01
Chr11	irgsp1_rep	CDS	111491	111603	.	+	0	Parent=Os11t0102800-01
Chr11	irgsp1_rep	CDS	112319	112402	.	+	1	Parent=Os11t0102800-01
Chr11	irgsp1_rep	CDS	112486	112534	.	+	1	Parent=Os11t0102800-01
Chr11	irgsp1_rep	CDS	112624	112715	.	+	0	Parent=Os11t0102800-01
Chr11	irgsp1_rep	CDS	112999	113128	.	+	1	Parent=Os11t0102800-01
Chr11	irgsp1_rep	CDS	113225	113301	.	+	0	Parent=Os11t0102800-01
Chr11	irgsp1_rep	CDS	113377	114995	.	+	1	Parent=Os11t0102800-01
Chr11	irgsp1_rep	CDS	115348	115545	.	+	2	Parent=Os11t0102800-01
Chr11	irgsp1_rep	CDS	115635	116173	.	+	2	Parent=Os11t0102800-01
Chr11	irgsp1_rep	three_prime_UTR	116174	116379	.	+	.	Parent=Os11t0102800-01
Chr11	irgsp1_rep	three_prime_UTR	116599	116986	.	+	.	Parent=Os11t0102800-01
Chr11	irgsp1_rep	mRNA	117292	124378	.	-	.	ID=Os11t0102900-01;Name=Os11t0102900-01;Locus_id=Os11g0102900;Note=Similar to predicted protein.;Transcript_evidence=AK243418 (DDBJ%2C Best hit);ORF_evidence=NP_001031499.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635),Malectin-like carbohydrate-binding domain (IPR024788);NIAS_FLcDNA=J100066I23;TENOR=Os11t0102900-01;KEGG=Os11t0102900-01
Chr11	irgsp1_rep	five_prime_UTR	124258	124378	.	-	.	Parent=Os11t0102900-01
Chr11	irgsp1_rep	five_prime_UTR	124019	124100	.	-	.	Parent=Os11t0102900-01
Chr11	irgsp1_rep	CDS	123943	124018	.	-	0	Parent=Os11t0102900-01
Chr11	irgsp1_rep	CDS	123255	123789	.	-	2	Parent=Os11t0102900-01
Chr11	irgsp1_rep	CDS	122661	123166	.	-	1	Parent=Os11t0102900-01
Chr11	irgsp1_rep	CDS	122435	122567	.	-	2	Parent=Os11t0102900-01
Chr11	irgsp1_rep	CDS	122276	122347	.	-	1	Parent=Os11t0102900-01
Chr11	irgsp1_rep	CDS	122126	122194	.	-	1	Parent=Os11t0102900-01
Chr11	irgsp1_rep	CDS	121969	122040	.	-	1	Parent=Os11t0102900-01
Chr11	irgsp1_rep	CDS	121698	121766	.	-	1	Parent=Os11t0102900-01
Chr11	irgsp1_rep	CDS	121343	121497	.	-	1	Parent=Os11t0102900-01
Chr11	irgsp1_rep	CDS	121028	121269	.	-	2	Parent=Os11t0102900-01
Chr11	irgsp1_rep	CDS	119091	119217	.	-	0	Parent=Os11t0102900-01
Chr11	irgsp1_rep	CDS	118455	118523	.	-	2	Parent=Os11t0102900-01
Chr11	irgsp1_rep	CDS	118161	118344	.	-	2	Parent=Os11t0102900-01
Chr11	irgsp1_rep	CDS	117889	118024	.	-	1	Parent=Os11t0102900-01
Chr11	irgsp1_rep	CDS	117428	117757	.	-	0	Parent=Os11t0102900-01
Chr11	irgsp1_rep	three_prime_UTR	117292	117427	.	-	.	Parent=Os11t0102900-01
Chr11	irgsp1_rep	mRNA	127373	129004	.	+	.	ID=Os11t0103000-00;Name=Os11t0103000-00;Locus_id=Os11g0103000;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=XP_002882632.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os11t0103000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	127373	129004	.	+	0	Parent=Os11t0103000-00
Chr11	irgsp1_rep	mRNA	127528	128227	.	-	.	ID=Os11t0103050-00;Name=Os11t0103050-00;Locus_id=Os11g0103050;Note=Hypothetical protein.;Transcript_evidence=BT086864 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0103050-00
Chr11	irgsp1_rep	CDS	127528	128227	.	-	0	Parent=Os11t0103050-00
Chr11	irgsp1_rep	mRNA	129996	135045	.	-	.	ID=Os11t0103100-00;Name=Os11t0103100-00;Locus_id=Os11g0103100;Note=Hypothetical conserved gene.;Transcript_evidence=AK119290 (DDBJ%2C Secondary hit);ORF_evidence=NP_001065522.2 (RefSeq);Expression=AK119290;TENOR=Os11t0103100-00;KEGG=Os11t0103100-00
Chr11	irgsp1_rep	five_prime_UTR	135015	135045	.	-	.	Parent=Os11t0103100-00
Chr11	irgsp1_rep	CDS	134849	135014	.	-	0	Parent=Os11t0103100-00
Chr11	irgsp1_rep	CDS	134808	134842	.	-	2	Parent=Os11t0103100-00
Chr11	irgsp1_rep	CDS	134417	134528	.	-	0	Parent=Os11t0103100-00
Chr11	irgsp1_rep	CDS	134126	134293	.	-	2	Parent=Os11t0103100-00
Chr11	irgsp1_rep	CDS	133803	134059	.	-	2	Parent=Os11t0103100-00
Chr11	irgsp1_rep	CDS	133656	133724	.	-	0	Parent=Os11t0103100-00
Chr11	irgsp1_rep	CDS	133367	133511	.	-	0	Parent=Os11t0103100-00
Chr11	irgsp1_rep	CDS	133146	133253	.	-	2	Parent=Os11t0103100-00
Chr11	irgsp1_rep	CDS	132891	132943	.	-	2	Parent=Os11t0103100-00
Chr11	irgsp1_rep	three_prime_UTR	132773	132890	.	-	.	Parent=Os11t0103100-00
Chr11	irgsp1_rep	three_prime_UTR	131131	132347	.	-	.	Parent=Os11t0103100-00
Chr11	irgsp1_rep	three_prime_UTR	130929	131040	.	-	.	Parent=Os11t0103100-00
Chr11	irgsp1_rep	three_prime_UTR	130565	130645	.	-	.	Parent=Os11t0103100-00
Chr11	irgsp1_rep	three_prime_UTR	129996	130335	.	-	.	Parent=Os11t0103100-00
Chr11	irgsp1_rep	mRNA	130264	134290	.	+	.	ID=Os11t0103150-00;Name=Os11t0103150-00;Locus_id=Os11g0103150;Note=Hypothetical protein.;Transcript_evidence=tplb0025h13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0103150-00
Chr11	irgsp1_rep	five_prime_UTR	130264	130328	.	+	.	Parent=Os11t0103150-00
Chr11	irgsp1_rep	five_prime_UTR	130559	130979	.	+	.	Parent=Os11t0103150-00
Chr11	irgsp1_rep	five_prime_UTR	131125	132328	.	+	.	Parent=Os11t0103150-00
Chr11	irgsp1_rep	five_prime_UTR	132642	132911	.	+	.	Parent=Os11t0103150-00
Chr11	irgsp1_rep	five_prime_UTR	133110	133249	.	+	.	Parent=Os11t0103150-00
Chr11	irgsp1_rep	five_prime_UTR	133362	133510	.	+	.	Parent=Os11t0103150-00
Chr11	irgsp1_rep	five_prime_UTR	133652	133680	.	+	.	Parent=Os11t0103150-00
Chr11	irgsp1_rep	CDS	133681	133719	.	+	0	Parent=Os11t0103150-00
Chr11	irgsp1_rep	CDS	133798	134043	.	+	0	Parent=Os11t0103150-00
Chr11	irgsp1_rep	CDS	134106	134111	.	+	0	Parent=Os11t0103150-00
Chr11	irgsp1_rep	three_prime_UTR	134112	134290	.	+	.	Parent=Os11t0103150-00
Chr11	irgsp1_rep	mRNA	136630	139200	.	+	.	ID=Os11t0103400-00;Name=Os11t0103400-00;Locus_id=Os11g0103400;Note=Similar to IBR domain containing protein.;Transcript_evidence=CT835558 (DDBJ%2C Secondary hit);ORF_evidence=B4FA87 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Ribonuclease H-like (IPR012337),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907);TENOR=Os11t0103400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	136630	136758	.	+	0	Parent=Os11t0103400-00
Chr11	irgsp1_rep	CDS	136781	137296	.	+	0	Parent=Os11t0103400-00
Chr11	irgsp1_rep	CDS	137736	138290	.	+	0	Parent=Os11t0103400-00
Chr11	irgsp1_rep	three_prime_UTR	138291	138518	.	+	.	Parent=Os11t0103400-00
Chr11	irgsp1_rep	three_prime_UTR	138683	139121	.	+	.	Parent=Os11t0103400-00
Chr11	irgsp1_rep	three_prime_UTR	139139	139200	.	+	.	Parent=Os11t0103400-00
Chr11	irgsp1_rep	mRNA	141421	142729	.	+	.	ID=Os11t0103550-00;Name=Os11t0103550-00;Locus_id=Os11g0103550;Note=Conserved hypothetical protein.;Transcript_evidence=AK374938 (DDBJ);ORF_evidence=Q2RBP9 (UniProt);TENOR=Os11t0103550-00
Chr11	irgsp1_rep	five_prime_UTR	141421	141617	.	+	.	Parent=Os11t0103550-00
Chr11	irgsp1_rep	CDS	141618	141632	.	+	0	Parent=Os11t0103550-00
Chr11	irgsp1_rep	CDS	142281	142664	.	+	0	Parent=Os11t0103550-00
Chr11	irgsp1_rep	three_prime_UTR	142665	142729	.	+	.	Parent=Os11t0103550-00
Chr11	irgsp1_rep	mRNA	144247	149101	.	-	.	ID=Os11t0103700-01;Name=Os11t0103700-01;Locus_id=Os11g0103700;Note=EF-Hand type domain containing protein.;Transcript_evidence=AK101720 (DDBJ%2C Best hit);ORF_evidence=NP_850252.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial inner membrane (GO:0005743),Molecular Function: binding (GO:0005488),Molecular Function: calcium ion binding (GO:0005509);InterPro=Mitochondrial carrier protein (IPR002067),EF-hand-like domain (IPR011992),Mitochondrial substrate/solute carrier (IPR018108),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J033061A09;Expression=AK101720;TENOR=Os11t0103700-01;KEGG=Os11t0103700-01
Chr11	irgsp1_rep	five_prime_UTR	148869	149101	.	-	.	Parent=Os11t0103700-01
Chr11	irgsp1_rep	CDS	148205	148868	.	-	0	Parent=Os11t0103700-01
Chr11	irgsp1_rep	CDS	147047	147464	.	-	2	Parent=Os11t0103700-01
Chr11	irgsp1_rep	CDS	146716	146860	.	-	1	Parent=Os11t0103700-01
Chr11	irgsp1_rep	CDS	146137	146252	.	-	0	Parent=Os11t0103700-01
Chr11	irgsp1_rep	CDS	145987	146065	.	-	1	Parent=Os11t0103700-01
Chr11	irgsp1_rep	CDS	145433	145666	.	-	0	Parent=Os11t0103700-01
Chr11	irgsp1_rep	CDS	144575	144931	.	-	0	Parent=Os11t0103700-01
Chr11	irgsp1_rep	three_prime_UTR	144247	144574	.	-	.	Parent=Os11t0103700-01
Chr11	irgsp1_rep	mRNA	152137	155480	.	+	.	ID=Os11t0103800-01;Name=Os11t0103800-01;Locus_id=Os11g0103800;Note=Conserved hypothetical protein.;Transcript_evidence=AK073546 (DDBJ%2C Best hit);ORF_evidence=XP_002460024.1 (RefSeq);NIAS_FLcDNA=J033041K10;TENOR=Os11t0103800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	152137	153566	.	+	.	Parent=Os11t0103800-01
Chr11	irgsp1_rep	CDS	153567	153851	.	+	0	Parent=Os11t0103800-01
Chr11	irgsp1_rep	CDS	154578	154730	.	+	0	Parent=Os11t0103800-01
Chr11	irgsp1_rep	three_prime_UTR	154731	155480	.	+	.	Parent=Os11t0103800-01
Chr11	irgsp1_rep	mRNA	162815	163466	.	-	.	ID=Os11t0104050-01;Name=Os11t0104050-01;Locus_id=Os11g0104050;Note=Preprotein translocase Sec%2C Sec61-beta subunit%2C eukarya domain containing protein.;Transcript_evidence=AK243463 (DDBJ%2C Best hit);ORF_evidence=Q2QYX6 (UniProt);InterPro=Preprotein translocase Sec%2C Sec61-beta subunit (IPR005609),Preprotein translocase Sec%2C Sec61-beta subunit%2C eukarya (IPR016482);NIAS_FLcDNA=J100071F07;TENOR=Os11t0104050-01;KEGG=Os11t0104050-01
Chr11	irgsp1_rep	five_prime_UTR	163402	163466	.	-	.	Parent=Os11t0104050-01
Chr11	irgsp1_rep	CDS	163078	163401	.	-	0	Parent=Os11t0104050-01
Chr11	irgsp1_rep	three_prime_UTR	162815	163077	.	-	.	Parent=Os11t0104050-01
Chr11	irgsp1_rep	mRNA	166305	169331	.	-	.	ID=Os11t0104150-01;Name=Os11t0104150-01;Locus_id=Os11g0104150;Note=Conserved hypothetical protein.;Transcript_evidence=AK242703 (DDBJ%2C Best hit);ORF_evidence=NP_001176299.1 (RefSeq);NIAS_FLcDNA=J090039K04;TENOR=Os11t0104150-01;KEGG=Os11t0104150-01
Chr11	irgsp1_rep	five_prime_UTR	166474	169331	.	-	.	Parent=Os11t0104150-01
Chr11	irgsp1_rep	CDS	166360	166473	.	-	0	Parent=Os11t0104150-01
Chr11	irgsp1_rep	three_prime_UTR	166305	166359	.	-	.	Parent=Os11t0104150-01
Chr11	irgsp1_rep	mRNA	177184	177755	.	+	.	ID=Os11t0104220-00;Name=Os11t0104220-00;Locus_id=Os11g0104220;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B8BNS3 (UniProt);TENOR=Os11t0104220-00;KEGG=Os11t0104220-00
Chr11	irgsp1_rep	CDS	177184	177411	.	+	0	Parent=Os11t0104220-00
Chr11	irgsp1_rep	CDS	177495	177755	.	+	0	Parent=Os11t0104220-00
Chr11	irgsp1_rep	mRNA	174544	178191	.	+	.	ID=Os11t0104240-00;Name=Os11t0104240-00;Locus_id=Os11g0104240;Note=Similar to CsAtPR5.;Transcript_evidence=AK371400 (DDBJ);ORF_evidence=B4G1N4 (UniProt);TENOR=Os11t0104240-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	174544	174780	.	+	0	Parent=Os11t0104240-00
Chr11	irgsp1_rep	CDS	175306	175636	.	+	0	Parent=Os11t0104240-00
Chr11	irgsp1_rep	CDS	177836	178191	.	+	2	Parent=Os11t0104240-00
Chr11	irgsp1_rep	mRNA	179895	181542	.	+	.	ID=Os11t0104260-01;Name=Os11t0104260-01;Locus_id=Os11g0104260;Note=Hypothetical conserved gene.;Transcript_evidence=AK288842 (DDBJ%2C Best hit);ORF_evidence=Q2RBP3 (UniProt);NIAS_FLcDNA=J090074J06;TENOR=Os11t0104260-01;KEGG=Os11t0104260-01
Chr11	irgsp1_rep	CDS	179895	180086	.	+	0	Parent=Os11t0104260-01
Chr11	irgsp1_rep	three_prime_UTR	180087	181542	.	+	.	Parent=Os11t0104260-01
Chr11	irgsp1_rep	mRNA	194381	199061	.	+	.	ID=Os11t0104300-01;Name=Os11t0104300-01;Locus_id=Os11g0104300;RAP-DB Gene Symbol Synonym(s)=D53%2C D53(D K3)%2C DK3%2C Dwf34;RAP-DB Gene Name Synonym(s)=DWARF KYUSHU 3%2C Dwarf Kyushu3%2C Dwarf Kyushu 3%2C Dwarf Kyushu-3%2C dwarf-53%2C DWARF 53%2C DWARF53;CGSNL Gene Symbol=D53;CGSNL Gene Name=DWARF KYUSHU 3;Oryzabase Gene Symbol Synonym(s)=D53(D K3)%2C DK3%2C Dwf34%2C SMXL6/7/8%2C OsD53;Oryzabase Gene Name Synonym(s)=Dwarf Kyushu3%2C Dwarf Kyushu 3%2C Dwarf Kyushu-3%2C dwarf-53%2C DWARF 53%2C DWARF53%2C SUPPRESSOR OF MAX2-LIKE6/7/8;Note=Substrate of the SCF<sup>D3</sup> ubiquitination complex%2C Repressor of strigolactone (SL) signalling;Transcript_evidence=KF709434;ORF_evidence=Q2RBP2;GO=Biological Process: protein metabolic process (GO:0019538);InterPro=Clp%2C N-terminal (IPR004176),P-loop containing nucleoside triphosphate hydrolase (IPR027417);Manual Curation=January 25%2C 2017;Literature_PMID=24336215,24336200;Oryzabase=921;TENOR=Os11t0104300-01;KEGG=Os11t0104300-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=nucleus (GO:0005634)
Chr11	irgsp1_rep	CDS	194381	195564	.	+	0	Parent=Os11t0104300-01
Chr11	irgsp1_rep	CDS	196724	196970	.	+	1	Parent=Os11t0104300-01
Chr11	irgsp1_rep	CDS	197097	199061	.	+	0	Parent=Os11t0104300-01
Chr11	irgsp1_rep	mRNA	199761	203743	.	-	.	ID=Os11t0104400-01;Name=Os11t0104400-01;Locus_id=Os11g0104400;CGSNL Gene Symbol=FAD3;CGSNL Gene Name=OMEGA-3 FATTY ACID DESATURASE 3;Oryzabase Gene Symbol Synonym(s)=OsFAD3;Oryzabase Gene Name Synonym(s)=w-3 fatty acid desaturase-3;Note=Similar to W-3 fatty acid desaturase.;Transcript_evidence=AK242740 (DDBJ%2C Best hit);ORF_evidence=P94013 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water (GO:0016717);InterPro=Fatty acid desaturase%2C type 1 (IPR005804),Protein of unknown function DUF3474 (IPR021863);NIAS_FLcDNA=J090049M01;Oryzabase=10242;TENOR=Os11t0104400-01;KEGG=Os11t0104400-01 (EC:1.14.19.-)
Chr11	irgsp1_rep	five_prime_UTR	203674	203743	.	-	.	Parent=Os11t0104400-01
Chr11	irgsp1_rep	CDS	203372	203673	.	-	0	Parent=Os11t0104400-01
Chr11	irgsp1_rep	CDS	203189	203278	.	-	1	Parent=Os11t0104400-01
Chr11	irgsp1_rep	CDS	202663	202729	.	-	1	Parent=Os11t0104400-01
Chr11	irgsp1_rep	CDS	201752	201844	.	-	0	Parent=Os11t0104400-01
Chr11	irgsp1_rep	CDS	201417	201602	.	-	0	Parent=Os11t0104400-01
Chr11	irgsp1_rep	CDS	201205	201282	.	-	0	Parent=Os11t0104400-01
Chr11	irgsp1_rep	CDS	200512	200649	.	-	0	Parent=Os11t0104400-01
Chr11	irgsp1_rep	CDS	200194	200394	.	-	0	Parent=Os11t0104400-01
Chr11	irgsp1_rep	three_prime_UTR	199761	200193	.	-	.	Parent=Os11t0104400-01
Chr11	irgsp1_rep	mRNA	227327	231807	.	+	.	ID=Os11t0104800-01;Name=Os11t0104800-01;Locus_id=Os11g0104800;CGSNL Gene Symbol=XOAT4;CGSNL Gene Name=XYLAN O-ACETYLTRANSFERASE 4;Oryzabase Gene Symbol Synonym(s)=OsTBL10%2C TBL10%2C OsXOAT4;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 10%2C xylan O-acetyltransferase 4;Note=Hypothetical conserved gene.;Transcript_evidence=AK242950 (DDBJ%2C Best hit);ORF_evidence=NP_191158.1 (RefSeq);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=J090088K21;Oryzabase=21465;TENOR=Os11t0104800-01;KEGG=Os11t0104800-01
Chr11	irgsp1_rep	five_prime_UTR	227327	227456	.	+	.	Parent=Os11t0104800-01
Chr11	irgsp1_rep	CDS	227457	227971	.	+	0	Parent=Os11t0104800-01
Chr11	irgsp1_rep	CDS	228051	228422	.	+	1	Parent=Os11t0104800-01
Chr11	irgsp1_rep	CDS	228531	228686	.	+	1	Parent=Os11t0104800-01
Chr11	irgsp1_rep	CDS	231207	231594	.	+	1	Parent=Os11t0104800-01
Chr11	irgsp1_rep	three_prime_UTR	231595	231807	.	+	.	Parent=Os11t0104800-01
Chr11	irgsp1_rep	mRNA	234164	238567	.	-	.	ID=Os11t0104833-00;Name=Os11t0104833-00;Locus_id=Os11g0104833;Note=Hypothetical protein.;Transcript_evidence=tplb0050e20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0104833-00
Chr11	irgsp1_rep	five_prime_UTR	238437	238567	.	-	.	Parent=Os11t0104833-00
Chr11	irgsp1_rep	five_prime_UTR	238135	238328	.	-	.	Parent=Os11t0104833-00
Chr11	irgsp1_rep	five_prime_UTR	237586	237698	.	-	.	Parent=Os11t0104833-00
Chr11	irgsp1_rep	five_prime_UTR	237369	237449	.	-	.	Parent=Os11t0104833-00
Chr11	irgsp1_rep	five_prime_UTR	237078	237291	.	-	.	Parent=Os11t0104833-00
Chr11	irgsp1_rep	five_prime_UTR	236924	236994	.	-	.	Parent=Os11t0104833-00
Chr11	irgsp1_rep	five_prime_UTR	236588	236684	.	-	.	Parent=Os11t0104833-00
Chr11	irgsp1_rep	five_prime_UTR	236475	236492	.	-	.	Parent=Os11t0104833-00
Chr11	irgsp1_rep	CDS	236374	236474	.	-	0	Parent=Os11t0104833-00
Chr11	irgsp1_rep	CDS	236058	236165	.	-	1	Parent=Os11t0104833-00
Chr11	irgsp1_rep	CDS	235894	235918	.	-	1	Parent=Os11t0104833-00
Chr11	irgsp1_rep	three_prime_UTR	235824	235893	.	-	.	Parent=Os11t0104833-00
Chr11	irgsp1_rep	three_prime_UTR	235644	235715	.	-	.	Parent=Os11t0104833-00
Chr11	irgsp1_rep	three_prime_UTR	234442	234649	.	-	.	Parent=Os11t0104833-00
Chr11	irgsp1_rep	three_prime_UTR	234164	234334	.	-	.	Parent=Os11t0104833-00
Chr11	irgsp1_rep	mRNA	234283	239271	.	+	.	ID=Os11t0104866-00;Name=Os11t0104866-00;Locus_id=Os11g0104866;Oryzabase Gene Name Synonym(s)=Clathrin heavy chain binding;Note=Similar to Clathrin heavy chain.;Transcript_evidence=ab initio prediction;ORF_evidence=Q39834 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: clathrin coat of trans-Golgi network vesicle (GO:0030130),Cellular Component: clathrin coat of coated pit (GO:0030132),Molecular Function: structural molecule activity (GO:0005198),Molecular Function: binding (GO:0005488);InterPro=Clathrin%2C heavy chain%2C propeller%2C N-terminal (IPR001473),Clathrin%2C heavy chain%2C linker%2C core motif (IPR015348),Armadillo-type fold (IPR016024),Clathrin%2C heavy chain%2C linker/propeller domain (IPR016025),Clathrin%2C heavy chain%2C propeller repeat (IPR022365);Oryzabase=20154;TENOR=Os11t0104866-00
Chr11	irgsp1_rep	CDS	234283	234327	.	+	0	Parent=Os11t0104866-00
Chr11	irgsp1_rep	CDS	234437	234641	.	+	0	Parent=Os11t0104866-00
Chr11	irgsp1_rep	CDS	235635	235723	.	+	2	Parent=Os11t0104866-00
Chr11	irgsp1_rep	CDS	235832	235910	.	+	0	Parent=Os11t0104866-00
Chr11	irgsp1_rep	CDS	236046	236173	.	+	2	Parent=Os11t0104866-00
Chr11	irgsp1_rep	CDS	236381	236479	.	+	0	Parent=Os11t0104866-00
Chr11	irgsp1_rep	CDS	236570	236678	.	+	0	Parent=Os11t0104866-00
Chr11	irgsp1_rep	CDS	236918	236997	.	+	2	Parent=Os11t0104866-00
Chr11	irgsp1_rep	CDS	237081	237308	.	+	0	Parent=Os11t0104866-00
Chr11	irgsp1_rep	CDS	237385	237450	.	+	0	Parent=Os11t0104866-00
Chr11	irgsp1_rep	CDS	237587	237703	.	+	0	Parent=Os11t0104866-00
Chr11	irgsp1_rep	CDS	238140	238337	.	+	0	Parent=Os11t0104866-00
Chr11	irgsp1_rep	CDS	238658	238717	.	+	0	Parent=Os11t0104866-00
Chr11	irgsp1_rep	CDS	238830	238916	.	+	0	Parent=Os11t0104866-00
Chr11	irgsp1_rep	CDS	239021	239104	.	+	0	Parent=Os11t0104866-00
Chr11	irgsp1_rep	CDS	239209	239271	.	+	0	Parent=Os11t0104866-00
Chr11	irgsp1_rep	mRNA	241107	244002	.	+	.	ID=Os11t0104900-00;Name=Os11t0104900-00;Locus_id=Os11g0104900;Oryzabase Gene Name Synonym(s)=Clathrin heavy chain binding;Note=Similar to Clathrin heavy chain.;Transcript_evidence=ab initio prediction;ORF_evidence=Q39834 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Molecular Function: binding (GO:0005488);InterPro=Clathrin%2C heavy chain/VPS%2C 7-fold repeat (IPR000547),Tetratricopeptide-like helical (IPR011990),Armadillo-type fold (IPR016024);Oryzabase=20154;TENOR=Os11t0104900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	241107	241958	.	+	0	Parent=Os11t0104900-00
Chr11	irgsp1_rep	CDS	242052	242537	.	+	0	Parent=Os11t0104900-00
Chr11	irgsp1_rep	CDS	242625	242795	.	+	0	Parent=Os11t0104900-00
Chr11	irgsp1_rep	CDS	242888	243073	.	+	0	Parent=Os11t0104900-00
Chr11	irgsp1_rep	CDS	243424	243546	.	+	0	Parent=Os11t0104900-00
Chr11	irgsp1_rep	CDS	243628	243738	.	+	0	Parent=Os11t0104900-00
Chr11	irgsp1_rep	CDS	243832	244002	.	+	0	Parent=Os11t0104900-00
Chr11	irgsp1_rep	mRNA	244022	244405	.	+	.	ID=Os11t0104933-01;Name=Os11t0104933-01;Locus_id=Os11g0104933;Note=Non-protein coding transcript.;Transcript_evidence=AK242528 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080315F16;TENOR=Os11t0104933-01
Chr11	irgsp1_rep	exon	244022	244405	.	+	.	Parent=Os11t0104933-01
Chr11	irgsp1_rep	mRNA	245170	246079	.	+	.	ID=Os11t0104966-00;Name=Os11t0104966-00;Locus_id=Os11g0104966;Note=Non-protein coding transcript.;Transcript_evidence=AK241127 (DDBJ%2C Secondary hit);ORF_evidence=NONE;TENOR=Os11t0104966-00
Chr11	irgsp1_rep	exon	245170	246079	.	+	.	Parent=Os11t0104966-00
Chr11	irgsp1_rep	mRNA	245031	245651	.	-	.	ID=Os11t0105000-00;Name=Os11t0105000-00;Locus_id=Os11g0105000;CGSNL Gene Symbol=CML25;CGSNL Gene Name=CALMODULIN-LIKE PROTEIN 25;Oryzabase Gene Symbol Synonym(s)=OsCML25;Oryzabase Gene Name Synonym(s)=calmodulin-like protein 25;Note=EF-HAND 2 domain containing protein.;Transcript_evidence=AK367395 (DDBJ);ORF_evidence=B7E7Q9 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);Oryzabase=9332;TENOR=Os11t0105000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	245638	245651	.	-	.	Parent=Os11t0105000-00
Chr11	irgsp1_rep	CDS	245188	245637	.	-	0	Parent=Os11t0105000-00
Chr11	irgsp1_rep	three_prime_UTR	245031	245187	.	-	.	Parent=Os11t0105000-00
Chr11	irgsp1_rep	mRNA	250848	251776	.	+	.	ID=Os11t0105350-00;Name=Os11t0105350-00;Locus_id=Os11g0105350;Note=Hypothetical protein.;Transcript_evidence=BT054429 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0105350-00
Chr11	irgsp1_rep	five_prime_UTR	250848	250866	.	+	.	Parent=Os11t0105350-00
Chr11	irgsp1_rep	CDS	250867	251187	.	+	0	Parent=Os11t0105350-00
Chr11	irgsp1_rep	three_prime_UTR	251188	251776	.	+	.	Parent=Os11t0105350-00
Chr11	irgsp1_rep	mRNA	252427	254863	.	-	.	ID=Os11t0105400-01;Name=Os11t0105400-01;Locus_id=Os11g0105400;Oryzabase Gene Symbol Synonym(s)=RPL9%2C OsRPL9;Oryzabase Gene Name Synonym(s)=mRNA turnover protein 4%2C ribosomal protein L9;Note=Ribosomal protein L10 family protein.;Transcript_evidence=AK067673 (DDBJ%2C Best hit);ORF_evidence=Q2QYV8 (UniProt);GO=Biological Process: ribosome biogenesis (GO:0042254),Cellular Component: intracellular (GO:0005622);InterPro=Ribosomal protein L10/acidic P0 (IPR001790);NIAS_FLcDNA=J013116N21;Oryzabase=20156;Expression=AK067673;TENOR=Os11t0105400-01;KEGG=Os11t0105400-01
Chr11	irgsp1_rep	five_prime_UTR	254786	254863	.	-	.	Parent=Os11t0105400-01
Chr11	irgsp1_rep	CDS	254758	254785	.	-	0	Parent=Os11t0105400-01
Chr11	irgsp1_rep	CDS	254236	254404	.	-	2	Parent=Os11t0105400-01
Chr11	irgsp1_rep	CDS	253953	254043	.	-	1	Parent=Os11t0105400-01
Chr11	irgsp1_rep	CDS	253798	253856	.	-	0	Parent=Os11t0105400-01
Chr11	irgsp1_rep	CDS	253642	253702	.	-	1	Parent=Os11t0105400-01
Chr11	irgsp1_rep	CDS	253226	253316	.	-	0	Parent=Os11t0105400-01
Chr11	irgsp1_rep	CDS	253066	253142	.	-	2	Parent=Os11t0105400-01
Chr11	irgsp1_rep	CDS	252728	252853	.	-	0	Parent=Os11t0105400-01
Chr11	irgsp1_rep	three_prime_UTR	252427	252727	.	-	.	Parent=Os11t0105400-01
Chr11	irgsp1_rep	mRNA	256918	262015	.	-	.	ID=Os11t0105750-01;Name=Os11t0105750-01;Locus_id=Os11g0105750;Note=Quinonprotein alcohol dehydrogenase-like domain containing protein.;Transcript_evidence=AK242870 (DDBJ%2C Best hit);ORF_evidence=B3IYT8 (UniProt);NIAS_FLcDNA=J090076L04;TENOR=Os11t0105750-01;KEGG=Os11t0105750-01
Chr11	irgsp1_rep	five_prime_UTR	261819	262015	.	-	.	Parent=Os11t0105750-01
Chr11	irgsp1_rep	CDS	261740	261818	.	-	0	Parent=Os11t0105750-01
Chr11	irgsp1_rep	CDS	261602	261648	.	-	2	Parent=Os11t0105750-01
Chr11	irgsp1_rep	CDS	260131	260835	.	-	0	Parent=Os11t0105750-01
Chr11	irgsp1_rep	CDS	258295	259587	.	-	0	Parent=Os11t0105750-01
Chr11	irgsp1_rep	CDS	258036	258167	.	-	0	Parent=Os11t0105750-01
Chr11	irgsp1_rep	CDS	257775	257956	.	-	0	Parent=Os11t0105750-01
Chr11	irgsp1_rep	CDS	257519	257630	.	-	1	Parent=Os11t0105750-01
Chr11	irgsp1_rep	CDS	257285	257428	.	-	0	Parent=Os11t0105750-01
Chr11	irgsp1_rep	CDS	257085	257183	.	-	0	Parent=Os11t0105750-01
Chr11	irgsp1_rep	three_prime_UTR	256918	257084	.	-	.	Parent=Os11t0105750-01
Chr11	irgsp1_rep	mRNA	258284	261894	.	+	.	ID=Os11t0105775-00;Name=Os11t0105775-00;Locus_id=Os11g0105775;Note=Hypothetical gene.;Transcript_evidence=BT085320 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0105775-00;KEGG=Os11t0105775-00
Chr11	irgsp1_rep	five_prime_UTR	258284	258979	.	+	.	Parent=Os11t0105775-00
Chr11	irgsp1_rep	CDS	258980	259390	.	+	0	Parent=Os11t0105775-00
Chr11	irgsp1_rep	three_prime_UTR	259391	259464	.	+	.	Parent=Os11t0105775-00
Chr11	irgsp1_rep	three_prime_UTR	261658	261894	.	+	.	Parent=Os11t0105775-00
Chr11	irgsp1_rep	mRNA	262623	264493	.	-	.	ID=Os11t0105800-01;Name=Os11t0105800-01;Locus_id=Os11g0105800;Note=Phosphatidate cytidylyltransferase family protein.;Transcript_evidence=AK110748 (DDBJ%2C Best hit);ORF_evidence=Q2QYV3 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Phosphatidate cytidylyltransferase (IPR000374);NIAS_FLcDNA=002-170-G04;Expression=AK110748;TENOR=Os11t0105800-01;KEGG=Os11t0105800-01
Chr11	irgsp1_rep	five_prime_UTR	264410	264493	.	-	.	Parent=Os11t0105800-01
Chr11	irgsp1_rep	CDS	264290	264409	.	-	0	Parent=Os11t0105800-01
Chr11	irgsp1_rep	CDS	263967	264034	.	-	0	Parent=Os11t0105800-01
Chr11	irgsp1_rep	CDS	263711	263845	.	-	1	Parent=Os11t0105800-01
Chr11	irgsp1_rep	CDS	263453	263568	.	-	1	Parent=Os11t0105800-01
Chr11	irgsp1_rep	CDS	263193	263307	.	-	2	Parent=Os11t0105800-01
Chr11	irgsp1_rep	CDS	262829	263099	.	-	1	Parent=Os11t0105800-01
Chr11	irgsp1_rep	three_prime_UTR	262623	262828	.	-	.	Parent=Os11t0105800-01
Chr11	irgsp1_rep	mRNA	265448	265893	.	-	.	ID=Os11t0105901-00;Name=Os11t0105901-00;Locus_id=Os11g0105901;Note=EF-hand-like domain domain containing protein.;Transcript_evidence=DQ245741 (DDBJ);ORF_evidence=Q2R327 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand-like domain (IPR011992);TENOR=Os11t0105901-00
Chr11	irgsp1_rep	five_prime_UTR	265685	265893	.	-	.	Parent=Os11t0105901-00
Chr11	irgsp1_rep	CDS	265484	265684	.	-	0	Parent=Os11t0105901-00
Chr11	irgsp1_rep	three_prime_UTR	265448	265483	.	-	.	Parent=Os11t0105901-00
Chr11	irgsp1_rep	mRNA	271246	273068	.	-	.	ID=Os11t0106000-01;Name=Os11t0106000-01;Locus_id=Os11g0106000;Note=Conserved hypothetical protein.;Transcript_evidence=AK070695 (DDBJ%2C Best hit);ORF_evidence=B8BNT5 (UniProt);NIAS_FLcDNA=J023057B09;Expression=AK070695;TENOR=Os11t0106000-01;KEGG=Os11t0106000-01
Chr11	irgsp1_rep	five_prime_UTR	272866	273068	.	-	.	Parent=Os11t0106000-01
Chr11	irgsp1_rep	CDS	272493	272865	.	-	0	Parent=Os11t0106000-01
Chr11	irgsp1_rep	CDS	272301	272317	.	-	2	Parent=Os11t0106000-01
Chr11	irgsp1_rep	three_prime_UTR	271246	272300	.	-	.	Parent=Os11t0106000-01
Chr11	irgsp1_rep	mRNA	267825	272908	.	-	.	ID=Os11t0106000-02;Name=Os11t0106000-02;Locus_id=Os11g0106000;Note=Conserved hypothetical protein.;Transcript_evidence=AK100185 (DDBJ%2C Best hit);ORF_evidence=B8BNT5 (UniProt);NIAS_FLcDNA=J023031M16;Expression=AK100185;TENOR=Os11t0106000-02;KEGG=Os11t0106000-02
Chr11	irgsp1_rep	five_prime_UTR	272866	272908	.	-	.	Parent=Os11t0106000-02
Chr11	irgsp1_rep	CDS	272493	272865	.	-	0	Parent=Os11t0106000-02
Chr11	irgsp1_rep	CDS	272301	272317	.	-	2	Parent=Os11t0106000-02
Chr11	irgsp1_rep	three_prime_UTR	272226	272300	.	-	.	Parent=Os11t0106000-02
Chr11	irgsp1_rep	three_prime_UTR	267825	268785	.	-	.	Parent=Os11t0106000-02
Chr11	irgsp1_rep	mRNA	281470	283525	.	+	.	ID=Os11t0106083-01;Name=Os11t0106083-01;Locus_id=Os11g0106083;Note=Hypothetical gene.;Transcript_evidence=AK241171 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065117O05;TENOR=Os11t0106083-01;KEGG=Os11t0106083-01
Chr11	irgsp1_rep	five_prime_UTR	281470	282194	.	+	.	Parent=Os11t0106083-01
Chr11	irgsp1_rep	five_prime_UTR	282416	282566	.	+	.	Parent=Os11t0106083-01
Chr11	irgsp1_rep	five_prime_UTR	282682	282718	.	+	.	Parent=Os11t0106083-01
Chr11	irgsp1_rep	five_prime_UTR	282829	282834	.	+	.	Parent=Os11t0106083-01
Chr11	irgsp1_rep	CDS	282835	282905	.	+	0	Parent=Os11t0106083-01
Chr11	irgsp1_rep	CDS	283128	283386	.	+	1	Parent=Os11t0106083-01
Chr11	irgsp1_rep	three_prime_UTR	283387	283525	.	+	.	Parent=Os11t0106083-01
Chr11	irgsp1_rep	mRNA	281458	283380	.	-	.	ID=Os11t0106100-00;Name=Os11t0106100-00;Locus_id=Os11g0106100;Oryzabase Gene Name Synonym(s)=OsMPH1 homologue;Note=Similar to Myb-like DNA-binding domain%2C SHAQKYF class family protein%2C expressed.;Transcript_evidence=FP093668 (DDBJ);ORF_evidence=Q2RBM7 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);Oryzabase=21926;TENOR=Os11t0106100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	283128	283380	.	-	0	Parent=Os11t0106100-00
Chr11	irgsp1_rep	CDS	282829	282905	.	-	2	Parent=Os11t0106100-00
Chr11	irgsp1_rep	CDS	282682	282718	.	-	0	Parent=Os11t0106100-00
Chr11	irgsp1_rep	CDS	282416	282544	.	-	2	Parent=Os11t0106100-00
Chr11	irgsp1_rep	CDS	282049	282194	.	-	2	Parent=Os11t0106100-00
Chr11	irgsp1_rep	three_prime_UTR	281679	282048	.	-	.	Parent=Os11t0106100-00
Chr11	irgsp1_rep	three_prime_UTR	281458	281605	.	-	.	Parent=Os11t0106100-00
Chr11	irgsp1_rep	mRNA	287551	293677	.	-	.	ID=Os11t0106200-01;Name=Os11t0106200-01;Locus_id=Os11g0106200;Note=Similar to cDNA clone:J013071M22%2C full insert sequence.;Transcript_evidence=AK072111 (DDBJ%2C Best hit);ORF_evidence=B7ECH1 (UniProt);GO=Cellular Component: outer membrane (GO:0019867);InterPro=Bacterial surface antigen (D15) (IPR000184);NIAS_FLcDNA=J013119I16;Expression=AK072111;TENOR=Os11t0106200-01;KEGG=Os11t0106200-01
Chr11	irgsp1_rep	five_prime_UTR	293410	293677	.	-	.	Parent=Os11t0106200-01
Chr11	irgsp1_rep	five_prime_UTR	293044	293208	.	-	.	Parent=Os11t0106200-01
Chr11	irgsp1_rep	five_prime_UTR	292807	292957	.	-	.	Parent=Os11t0106200-01
Chr11	irgsp1_rep	five_prime_UTR	292613	292712	.	-	.	Parent=Os11t0106200-01
Chr11	irgsp1_rep	five_prime_UTR	290155	292084	.	-	.	Parent=Os11t0106200-01
Chr11	irgsp1_rep	CDS	289666	290154	.	-	0	Parent=Os11t0106200-01
Chr11	irgsp1_rep	CDS	288548	289030	.	-	0	Parent=Os11t0106200-01
Chr11	irgsp1_rep	CDS	287628	288149	.	-	0	Parent=Os11t0106200-01
Chr11	irgsp1_rep	three_prime_UTR	287551	287627	.	-	.	Parent=Os11t0106200-01
Chr11	irgsp1_rep	mRNA	287032	293606	.	-	.	ID=Os11t0106200-02;Name=Os11t0106200-02;Locus_id=Os11g0106200;Note=Similar to Outer membrane protein%2C OMP85 family protein.;Transcript_evidence=AK066650 (DDBJ%2C Best hit);ORF_evidence=Q2RBM6 (UniProt);GO=Cellular Component: outer membrane (GO:0019867);InterPro=Bacterial surface antigen (D15) (IPR000184);NIAS_FLcDNA=J013071M22;TENOR=Os11t0106200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	293410	293606	.	-	.	Parent=Os11t0106200-02
Chr11	irgsp1_rep	five_prime_UTR	293044	293208	.	-	.	Parent=Os11t0106200-02
Chr11	irgsp1_rep	five_prime_UTR	292807	292957	.	-	.	Parent=Os11t0106200-02
Chr11	irgsp1_rep	five_prime_UTR	292613	292712	.	-	.	Parent=Os11t0106200-02
Chr11	irgsp1_rep	five_prime_UTR	291962	292084	.	-	.	Parent=Os11t0106200-02
Chr11	irgsp1_rep	five_prime_UTR	290155	290229	.	-	.	Parent=Os11t0106200-02
Chr11	irgsp1_rep	CDS	289666	290154	.	-	0	Parent=Os11t0106200-02
Chr11	irgsp1_rep	CDS	288548	289030	.	-	0	Parent=Os11t0106200-02
Chr11	irgsp1_rep	CDS	287640	288149	.	-	0	Parent=Os11t0106200-02
Chr11	irgsp1_rep	CDS	287477	287557	.	-	0	Parent=Os11t0106200-02
Chr11	irgsp1_rep	three_prime_UTR	287032	287476	.	-	.	Parent=Os11t0106200-02
Chr11	irgsp1_rep	mRNA	287032	288978	.	-	.	ID=Os11t0106200-03;Name=Os11t0106200-03;Locus_id=Os11g0106200;Note=Similar to cDNA clone:J013071M22%2C full insert sequence.;Transcript_evidence=AK105076 (DDBJ%2C Best hit);ORF_evidence=B7ECH1 (UniProt);GO=Cellular Component: outer membrane (GO:0019867);InterPro=Bacterial surface antigen (D15) (IPR000184);NIAS_FLcDNA=001-045-F07;Expression=AK105076;TENOR=Os11t0106200-03;KEGG=Os11t0106200-03
Chr11	irgsp1_rep	five_prime_UTR	288977	288978	.	-	.	Parent=Os11t0106200-03
Chr11	irgsp1_rep	CDS	288548	288976	.	-	0	Parent=Os11t0106200-03
Chr11	irgsp1_rep	CDS	287640	288149	.	-	0	Parent=Os11t0106200-03
Chr11	irgsp1_rep	CDS	287477	287557	.	-	0	Parent=Os11t0106200-03
Chr11	irgsp1_rep	three_prime_UTR	287032	287476	.	-	.	Parent=Os11t0106200-03
Chr11	irgsp1_rep	mRNA	295791	301468	.	-	.	ID=Os11t0106400-01;Name=Os11t0106400-01;Locus_id=Os11g0106400;Note=Similar to Ubiquitin-activating enzyme E1 2.;Transcript_evidence=AK111781 (DDBJ%2C Best hit);ORF_evidence=B9GBE8 (UniProt);GO=Biological Process: protein modification process (GO:0006464),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524),Molecular Function: small protein activating enzyme activity (GO:0008641);InterPro=Ubiquitin/SUMO-activating enzyme E1 (IPR000011),Ubiquitin-activating enzyme repeat (IPR000127),UBA/THIF-type NAD/FAD binding fold (IPR000594),Molybdenum cofactor biosynthesis%2C MoeB (IPR009036),NAD(P)-binding domain (IPR016040),Ubiquitin-activating enzyme%2C E1%2C active site (IPR018074),Ubiquitin-activating enzyme%2C E1 (IPR018075),Ubiquitin-activating enzyme e1%2C C-terminal (IPR018965),Ubiquitin-activating enzyme (IPR019572),Ubiquitin-like 1 activating enzyme%2C catalytic cysteine domain (IPR023280);NIAS_FLcDNA=J023083B12;Expression=AK111781;TENOR=Os11t0106400-01;KEGG=Os11t0106400-01 (EC:6.3.2.19)
Chr11	irgsp1_rep	five_prime_UTR	301288	301468	.	-	.	Parent=Os11t0106400-01
Chr11	irgsp1_rep	CDS	301053	301287	.	-	0	Parent=Os11t0106400-01
Chr11	irgsp1_rep	CDS	300133	300350	.	-	2	Parent=Os11t0106400-01
Chr11	irgsp1_rep	CDS	298431	299225	.	-	0	Parent=Os11t0106400-01
Chr11	irgsp1_rep	CDS	297468	298336	.	-	0	Parent=Os11t0106400-01
Chr11	irgsp1_rep	CDS	296826	297258	.	-	1	Parent=Os11t0106400-01
Chr11	irgsp1_rep	CDS	296048	296644	.	-	0	Parent=Os11t0106400-01
Chr11	irgsp1_rep	three_prime_UTR	295791	296047	.	-	.	Parent=Os11t0106400-01
Chr11	irgsp1_rep	mRNA	295875	297797	.	-	.	ID=Os11t0106400-02;Name=Os11t0106400-02;Locus_id=Os11g0106400;Note=Similar to Ubiquitin-activating enzyme E1.;Transcript_evidence=AK111741 (DDBJ%2C Best hit);ORF_evidence=Q2QYU8 (UniProt);GO=Biological Process: protein modification process (GO:0006464),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: small protein activating enzyme activity (GO:0008641);InterPro=Ubiquitin-activating enzyme repeat (IPR000127),Molybdenum cofactor biosynthesis%2C MoeB (IPR009036),NAD(P)-binding domain (IPR016040),Ubiquitin-activating enzyme%2C E1%2C active site (IPR018074),Ubiquitin-activating enzyme e1%2C C-terminal (IPR018965),Ubiquitin-activating enzyme (IPR019572),Ubiquitin-like 1 activating enzyme%2C catalytic cysteine domain (IPR023280);NIAS_FLcDNA=J023049I12;Expression=AK111741;TENOR=Os11t0106400-02;KEGG=Os11t0106400-02 (EC:6.3.2.19)
Chr11	irgsp1_rep	five_prime_UTR	297797	297797	.	-	.	Parent=Os11t0106400-02
Chr11	irgsp1_rep	CDS	297468	297796	.	-	0	Parent=Os11t0106400-02
Chr11	irgsp1_rep	CDS	296826	297258	.	-	1	Parent=Os11t0106400-02
Chr11	irgsp1_rep	CDS	296048	296644	.	-	0	Parent=Os11t0106400-02
Chr11	irgsp1_rep	three_prime_UTR	295875	296047	.	-	.	Parent=Os11t0106400-02
Chr11	irgsp1_rep	mRNA	295789	297688	.	-	.	ID=Os11t0106400-03;Name=Os11t0106400-03;Locus_id=Os11g0106400;Note=Similar to Ubiquitin-activating enzyme E1.;Transcript_evidence=AK104898 (DDBJ%2C Best hit);ORF_evidence=Q2QYU8 (UniProt);GO=Biological Process: protein modification process (GO:0006464),Molecular Function: ATP binding (GO:0005524),Molecular Function: small protein activating enzyme activity (GO:0008641);InterPro=Ubiquitin-activating enzyme repeat (IPR000127),Molybdenum cofactor biosynthesis%2C MoeB (IPR009036),Ubiquitin-activating enzyme e1%2C C-terminal (IPR018965),Ubiquitin-like 1 activating enzyme%2C catalytic cysteine domain (IPR023280);NIAS_FLcDNA=001-046-C03;Expression=AK104898;TENOR=Os11t0106400-03;KEGG=Os11t0106400-03 (EC:6.3.2.19)
Chr11	irgsp1_rep	CDS	297468	297688	.	-	0	Parent=Os11t0106400-03
Chr11	irgsp1_rep	CDS	296826	297258	.	-	1	Parent=Os11t0106400-03
Chr11	irgsp1_rep	CDS	296048	296644	.	-	0	Parent=Os11t0106400-03
Chr11	irgsp1_rep	three_prime_UTR	295789	296047	.	-	.	Parent=Os11t0106400-03
Chr11	irgsp1_rep	mRNA	296026	301170	.	+	.	ID=Os11t0106550-00;Name=Os11t0106550-00;Locus_id=Os11g0106550;Note=Hypothetical protein.;Transcript_evidence=tplb0053b11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0106550-00
Chr11	irgsp1_rep	five_prime_UTR	296026	296623	.	+	.	Parent=Os11t0106550-00
Chr11	irgsp1_rep	CDS	296624	296626	.	+	0	Parent=Os11t0106550-00
Chr11	irgsp1_rep	CDS	296806	297236	.	+	0	Parent=Os11t0106550-00
Chr11	irgsp1_rep	CDS	297443	297548	.	+	1	Parent=Os11t0106550-00
Chr11	irgsp1_rep	three_prime_UTR	297549	298336	.	+	.	Parent=Os11t0106550-00
Chr11	irgsp1_rep	three_prime_UTR	298431	299231	.	+	.	Parent=Os11t0106550-00
Chr11	irgsp1_rep	three_prime_UTR	300144	300342	.	+	.	Parent=Os11t0106550-00
Chr11	irgsp1_rep	three_prime_UTR	301047	301170	.	+	.	Parent=Os11t0106550-00
Chr11	irgsp1_rep	mRNA	305062	307728	.	-	.	ID=Os11t0106700-01;Name=Os11t0106700-01;Locus_id=Os11g0106700;CGSNL Gene Symbol=FER1;CGSNL Gene Name=FERRITIN 1;Oryzabase Gene Symbol Synonym(s)=OsFER1%2C OsFer1;Oryzabase Gene Name Synonym(s)=Ferritin 1%2C Ferritin;Note=Similar to Ferritin 1%2C chloroplast precursor (EC 1.16.3.1) (ZmFer1).;Transcript_evidence=AK106026 (DDBJ%2C Best hit);ORF_evidence=Q8LK80 (UniProt);GO=Biological Process: iron ion transport (GO:0006826),Biological Process: cellular iron ion homeostasis (GO:0006879),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: binding (GO:0005488),Molecular Function: ferric iron binding (GO:0008199),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: transition metal ion binding (GO:0046914);InterPro=Ferritin (IPR001519),Ferritin/DPS protein domain (IPR008331),Ferritin-like (IPR009040),Ferritin/ribonucleotide reductase-like (IPR009078),Ferritin-related (IPR012347);NIAS_FLcDNA=001-206-C10;Oryzabase=8316;Expression=AK106026;TENOR=Os11t0106700-01;KEGG=Os11t0106700-01 (EC:1.16.3.1)
Chr11	irgsp1_rep	five_prime_UTR	307653	307728	.	-	.	Parent=Os11t0106700-01
Chr11	irgsp1_rep	CDS	307366	307652	.	-	0	Parent=Os11t0106700-01
Chr11	irgsp1_rep	CDS	306883	306966	.	-	1	Parent=Os11t0106700-01
Chr11	irgsp1_rep	CDS	306742	306802	.	-	1	Parent=Os11t0106700-01
Chr11	irgsp1_rep	CDS	306542	306638	.	-	0	Parent=Os11t0106700-01
Chr11	irgsp1_rep	CDS	305981	306003	.	-	2	Parent=Os11t0106700-01
Chr11	irgsp1_rep	three_prime_UTR	305764	305980	.	-	.	Parent=Os11t0106700-01
Chr11	irgsp1_rep	three_prime_UTR	305587	305650	.	-	.	Parent=Os11t0106700-01
Chr11	irgsp1_rep	three_prime_UTR	305062	305480	.	-	.	Parent=Os11t0106700-01
Chr11	irgsp1_rep	mRNA	305050	307725	.	-	.	ID=Os11t0106700-02;Name=Os11t0106700-02;Locus_id=Os11g0106700;CGSNL Gene Symbol=FER1;CGSNL Gene Name=FERRITIN 1;Oryzabase Gene Symbol Synonym(s)=OsFER1%2C OsFer1;Oryzabase Gene Name Synonym(s)=Ferritin 1%2C Ferritin;Note=Similar to Ferritin 1%2C chloroplast precursor (EC 1.16.3.1) (ZmFer1).;Transcript_evidence=AK059354 (DDBJ%2C Best hit);ORF_evidence=Q8LK80 (UniProt);GO=Biological Process: iron ion transport (GO:0006826),Biological Process: cellular iron ion homeostasis (GO:0006879),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: binding (GO:0005488),Molecular Function: ferric iron binding (GO:0008199),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: transition metal ion binding (GO:0046914);InterPro=Ferritin (IPR001519),Ferritin/DPS protein domain (IPR008331),Ferritin-like (IPR009040),Ferritin/ribonucleotide reductase-like (IPR009078),Ferritin-related (IPR012347);NIAS_FLcDNA=001-026-D04;Oryzabase=8316;Expression=AK059354;TENOR=Os11t0106700-02;KEGG=Os11t0106700-02 (EC:1.16.3.1)
Chr11	irgsp1_rep	five_prime_UTR	307653	307725	.	-	.	Parent=Os11t0106700-02
Chr11	irgsp1_rep	CDS	307366	307652	.	-	0	Parent=Os11t0106700-02
Chr11	irgsp1_rep	CDS	306883	306966	.	-	1	Parent=Os11t0106700-02
Chr11	irgsp1_rep	CDS	306742	306802	.	-	1	Parent=Os11t0106700-02
Chr11	irgsp1_rep	CDS	306542	306638	.	-	0	Parent=Os11t0106700-02
Chr11	irgsp1_rep	CDS	305981	306003	.	-	2	Parent=Os11t0106700-02
Chr11	irgsp1_rep	three_prime_UTR	305955	305980	.	-	.	Parent=Os11t0106700-02
Chr11	irgsp1_rep	three_prime_UTR	305764	305829	.	-	.	Parent=Os11t0106700-02
Chr11	irgsp1_rep	three_prime_UTR	305587	305650	.	-	.	Parent=Os11t0106700-02
Chr11	irgsp1_rep	three_prime_UTR	305050	305480	.	-	.	Parent=Os11t0106700-02
Chr11	irgsp1_rep	mRNA	308931	312143	.	+	.	ID=Os11t0106800-00;Name=Os11t0106800-00;Locus_id=Os11g0106800;Note=Hypothetical conserved gene.;Transcript_evidence=EU965912 (DDBJ);ORF_evidence=XP_002448863.1 (RefSeq);TENOR=Os11t0106800-00;KEGG=Os11t0106800-00
Chr11	irgsp1_rep	CDS	308931	309185	.	+	0	Parent=Os11t0106800-00
Chr11	irgsp1_rep	CDS	309497	309640	.	+	0	Parent=Os11t0106800-00
Chr11	irgsp1_rep	CDS	310130	310271	.	+	0	Parent=Os11t0106800-00
Chr11	irgsp1_rep	CDS	310856	311031	.	+	2	Parent=Os11t0106800-00
Chr11	irgsp1_rep	three_prime_UTR	311032	311097	.	+	.	Parent=Os11t0106800-00
Chr11	irgsp1_rep	three_prime_UTR	311978	312143	.	+	.	Parent=Os11t0106800-00
Chr11	irgsp1_rep	mRNA	314530	315329	.	+	.	ID=Os11t0106900-01;Name=Os11t0106900-01;Locus_id=Os11g0106900;Oryzabase Gene Symbol Synonym(s)=LBD11-1;Oryzabase Gene Name Synonym(s)=LBD family transcription factor 11-1%2C lateral organ boundaries domain protein 11-1;Note=Lateral organ boundaries%2C LOB domain containing protein.;Transcript_evidence=AK241761 (DDBJ%2C Best hit);ORF_evidence=NP_565695.1 (RefSeq);InterPro=Lateral organ boundaries%2C LOB (IPR004883);NIAS_FLcDNA=J065205C18;Oryzabase=21578;TENOR=Os11t0106900-01;KEGG=Os11t0106900-01
Chr11	irgsp1_rep	five_prime_UTR	314530	314697	.	+	.	Parent=Os11t0106900-01
Chr11	irgsp1_rep	CDS	314698	315168	.	+	0	Parent=Os11t0106900-01
Chr11	irgsp1_rep	three_prime_UTR	315169	315329	.	+	.	Parent=Os11t0106900-01
Chr11	irgsp1_rep	mRNA	329049	332820	.	+	.	ID=Os11t0107000-01;Name=Os11t0107000-01;Locus_id=Os11g0107000;RAP-DB Gene Symbol Synonym(s)=OsTBL2%2C TBL2;RAP-DB Gene Name Synonym(s)=trichome birefringence-like 2;CGSNL Gene Symbol=XOAT12;CGSNL Gene Name=XYLAN O-ACETYLTRANSFERASE 12;Oryzabase Gene Symbol Synonym(s)=OsTBL2%2C TBL2%2C OsXOAT12;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 2%2C xylan O-acetyltransferase 12;Note=Xylan acetyltransferase%2C Resistance to bacterial leaf blight disease;Transcript_evidence=AK065582;ORF_evidence=Q2RBL8;InterPro=PC-Esterase (IPR026057),Trichome birefringence-like family (IPR029962),PMR5 N-terminal domain (IPR025846);NIAS_FLcDNA=J013032I12;Manual Curation=January 5%2C 2017;Literature_PMID=27864442;Oryzabase=21457;Expression=AK065582;TENOR=Os11t0107000-01;KEGG=Os11t0107000-01
Chr11	irgsp1_rep	five_prime_UTR	329049	329128	.	+	.	Parent=Os11t0107000-01
Chr11	irgsp1_rep	CDS	329129	329751	.	+	0	Parent=Os11t0107000-01
Chr11	irgsp1_rep	CDS	331080	331251	.	+	1	Parent=Os11t0107000-01
Chr11	irgsp1_rep	CDS	331355	331563	.	+	0	Parent=Os11t0107000-01
Chr11	irgsp1_rep	CDS	331777	331935	.	+	1	Parent=Os11t0107000-01
Chr11	irgsp1_rep	CDS	332277	332625	.	+	1	Parent=Os11t0107000-01
Chr11	irgsp1_rep	three_prime_UTR	332626	332820	.	+	.	Parent=Os11t0107000-01
Chr11	irgsp1_rep	mRNA	334094	335114	.	-	.	ID=Os11t0107266-00;Name=Os11t0107266-00;Locus_id=Os11g0107266;CGSNL Gene Symbol=CAX7;CGSNL Gene Name=Ca(2+)/H(+) EXCHANGER 7;Oryzabase Gene Symbol Synonym(s)=OsCAX7%2C OsNCX12%2C NCX12%2C OsNaCa11exA;Oryzabase Gene Name Synonym(s)=Vacuolar cation/proton exchanger 7%2C Ca(2+)/H(+) exchanger 7%2C cation/H+ exchanger 7%2C Na+/Ca2+ Exchanger 12%2C Sodium/calcium exchanger 12;Note=Similar to Sodium/calcium exchanger protein.;Transcript_evidence=BT043250 (DDBJ);ORF_evidence=Q2RBL7 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Sodium/calcium exchanger membrane region (IPR004837);Oryzabase=15455;TENOR=Os11t0107266-00;KEGG=Os11t0107266-00
Chr11	irgsp1_rep	five_prime_UTR	335105	335114	.	-	.	Parent=Os11t0107266-00
Chr11	irgsp1_rep	CDS	334094	335104	.	-	0	Parent=Os11t0107266-00
Chr11	irgsp1_rep	mRNA	341400	345820	.	+	.	ID=Os11t0107400-01;Name=Os11t0107400-01;Locus_id=Os11g0107400;CGSNL Gene Symbol=MFS6;CGSNL Gene Name=MAJOR FACILITATOR SUPERFAMILY 6;Oryzabase Gene Symbol Synonym(s)=OsMFS6;Oryzabase Gene Name Synonym(s)=major facilitator superfamily 6;Note=Nodulin-like domain containing protein.;Transcript_evidence=AK065945 (DDBJ%2C Best hit);ORF_evidence=Q2QYU1 (UniProt);InterPro=PUCC protein (IPR004896),Nodulin-like (IPR010658),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J013049F17;Oryzabase=21389;Expression=AK065945;TENOR=Os11t0107400-01;KEGG=Os11t0107400-01
Chr11	irgsp1_rep	five_prime_UTR	341400	341483	.	+	.	Parent=Os11t0107400-01
Chr11	irgsp1_rep	CDS	341484	341852	.	+	0	Parent=Os11t0107400-01
Chr11	irgsp1_rep	CDS	344098	344972	.	+	0	Parent=Os11t0107400-01
Chr11	irgsp1_rep	CDS	345063	345573	.	+	1	Parent=Os11t0107400-01
Chr11	irgsp1_rep	three_prime_UTR	345574	345820	.	+	.	Parent=Os11t0107400-01
Chr11	irgsp1_rep	mRNA	341469	345714	.	-	.	ID=Os11t0107425-00;Name=Os11t0107425-00;Locus_id=Os11g0107425;Note=Hypothetical protein.;Transcript_evidence=tplb0040d22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0107425-00
Chr11	irgsp1_rep	five_prime_UTR	345059	345714	.	-	.	Parent=Os11t0107425-00
Chr11	irgsp1_rep	five_prime_UTR	344217	344968	.	-	.	Parent=Os11t0107425-00
Chr11	irgsp1_rep	CDS	344091	344216	.	-	0	Parent=Os11t0107425-00
Chr11	irgsp1_rep	CDS	341469	341849	.	-	0	Parent=Os11t0107425-00
Chr11	irgsp1_rep	mRNA	346086	347655	.	-	.	ID=Os11t0107450-01;Name=Os11t0107450-01;Locus_id=Os11g0107450;Note=Conserved hypothetical protein.;Transcript_evidence=AK243533 (DDBJ%2C Best hit);ORF_evidence=NP_001176304.1 (RefSeq);NIAS_FLcDNA=J100077H02;TENOR=Os11t0107450-01;KEGG=Os11t0107450-01
Chr11	irgsp1_rep	five_prime_UTR	347464	347655	.	-	.	Parent=Os11t0107450-01
Chr11	irgsp1_rep	five_prime_UTR	346665	346742	.	-	.	Parent=Os11t0107450-01
Chr11	irgsp1_rep	CDS	346574	346664	.	-	0	Parent=Os11t0107450-01
Chr11	irgsp1_rep	CDS	346352	346467	.	-	2	Parent=Os11t0107450-01
Chr11	irgsp1_rep	three_prime_UTR	346086	346351	.	-	.	Parent=Os11t0107450-01
Chr11	irgsp1_rep	mRNA	352295	355319	.	+	.	ID=Os11t0107500-01;Name=Os11t0107500-01;Locus_id=Os11g0107500;Note=Tautomerase domain containing protein.;Transcript_evidence=AK121033 (DDBJ%2C Best hit);ORF_evidence=NP_001150717.1 (RefSeq);InterPro=Macrophage migration inhibitory factor (IPR001398),Tautomerase (IPR014347);NIAS_FLcDNA=J023050K24;Expression=AK121033;TENOR=Os11t0107500-01;KEGG=Os11t0107500-01
Chr11	irgsp1_rep	five_prime_UTR	352295	352400	.	+	.	Parent=Os11t0107500-01
Chr11	irgsp1_rep	CDS	352401	352511	.	+	0	Parent=Os11t0107500-01
Chr11	irgsp1_rep	CDS	354063	354263	.	+	0	Parent=Os11t0107500-01
Chr11	irgsp1_rep	CDS	354354	354407	.	+	0	Parent=Os11t0107500-01
Chr11	irgsp1_rep	three_prime_UTR	354408	355319	.	+	.	Parent=Os11t0107500-01
Chr11	irgsp1_rep	mRNA	356595	357580	.	+	.	ID=Os11t0107600-01;Name=Os11t0107600-01;Locus_id=Os11g0107600;Note=Similar to prenylated Rab receptor 2.;Transcript_evidence=AK288022 (DDBJ%2C Best hit);ORF_evidence=Q2RBL4 (UniProt);InterPro=Prenylated rab acceptor PRA1 (IPR004895);NIAS_FLcDNA=J075127H24;TENOR=Os11t0107600-01;KEGG=Os11t0107600-01
Chr11	irgsp1_rep	five_prime_UTR	356595	356689	.	+	.	Parent=Os11t0107600-01
Chr11	irgsp1_rep	CDS	356690	357352	.	+	0	Parent=Os11t0107600-01
Chr11	irgsp1_rep	three_prime_UTR	357353	357580	.	+	.	Parent=Os11t0107600-01
Chr11	irgsp1_rep	mRNA	359312	361249	.	+	.	ID=Os11t0107700-01;Name=Os11t0107700-01;Locus_id=Os11g0107700;Note=Similar to Leucine Rich Repeat family protein%2C expressed.;Transcript_evidence=AK109643 (DDBJ%2C Best hit);ORF_evidence=Q2RBL3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=002-138-G09;Expression=AK109643;TENOR=Os11t0107700-01;KEGG=Os11t0107700-01
Chr11	irgsp1_rep	five_prime_UTR	359312	359313	.	+	.	Parent=Os11t0107700-01
Chr11	irgsp1_rep	CDS	359314	361149	.	+	0	Parent=Os11t0107700-01
Chr11	irgsp1_rep	three_prime_UTR	361150	361249	.	+	.	Parent=Os11t0107700-01
Chr11	irgsp1_rep	mRNA	359631	362626	.	+	.	ID=Os11t0107700-02;Name=Os11t0107700-02;Locus_id=Os11g0107700;Note=Similar to Leucine Rich Repeat family protein%2C expressed.;Transcript_evidence=AK073061 (DDBJ%2C Best hit);ORF_evidence=Q2RBL3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033021A01;TENOR=Os11t0107700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	359631	359937	.	+	.	Parent=Os11t0107700-02
Chr11	irgsp1_rep	CDS	359938	361105	.	+	0	Parent=Os11t0107700-02
Chr11	irgsp1_rep	CDS	361711	362351	.	+	2	Parent=Os11t0107700-02
Chr11	irgsp1_rep	three_prime_UTR	362352	362626	.	+	.	Parent=Os11t0107700-02
Chr11	irgsp1_rep	mRNA	359649	360450	.	-	.	ID=Os11t0107775-00;Name=Os11t0107775-00;Locus_id=Os11g0107775;Note=Hypothetical protein.;Transcript_evidence=BT086967 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0107775-00
Chr11	irgsp1_rep	five_prime_UTR	360438	360450	.	-	.	Parent=Os11t0107775-00
Chr11	irgsp1_rep	CDS	360170	360437	.	-	0	Parent=Os11t0107775-00
Chr11	irgsp1_rep	CDS	359649	359840	.	-	2	Parent=Os11t0107775-00
Chr11	irgsp1_rep	mRNA	360821	361938	.	-	.	ID=Os11t0107850-00;Name=Os11t0107850-00;Locus_id=Os11g0107850;Note=Hypothetical protein.;Transcript_evidence=EU951884 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0107850-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	361895	361938	.	-	.	Parent=Os11t0107850-00
Chr11	irgsp1_rep	CDS	361725	361894	.	-	0	Parent=Os11t0107850-00
Chr11	irgsp1_rep	CDS	360821	361126	.	-	1	Parent=Os11t0107850-00
Chr11	irgsp1_rep	mRNA	392252	394404	.	+	.	ID=Os11t0108650-00;Name=Os11t0108650-00;Locus_id=Os11g0108650;CGSNL Gene Symbol=LAC20;CGSNL Gene Name=LACCASE 20;Oryzabase Gene Symbol Synonym(s)=OsLAC20;Oryzabase Gene Name Synonym(s)=laccase 20;Note=Similar to Laccase-23.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QYS3 (UniProt);GO=Biological Process: lignin catabolic process (GO:0046274),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: apoplast (GO:0048046),Molecular Function: copper ion binding (GO:0005507),Molecular Function: laccase activity (GO:0008471);InterPro=Cupredoxin (IPR008972),Multicopper oxidase%2C type 3 (IPR011707),Laccase (IPR017761);Oryzabase=21625;TENOR=Os11t0108650-00
Chr11	irgsp1_rep	CDS	392252	392341	.	+	0	Parent=Os11t0108650-00
Chr11	irgsp1_rep	CDS	392458	392860	.	+	0	Parent=Os11t0108650-00
Chr11	irgsp1_rep	CDS	394292	394404	.	+	2	Parent=Os11t0108650-00
Chr11	irgsp1_rep	mRNA	395576	396910	.	+	.	ID=Os11t0108700-00;Name=Os11t0108700-00;Locus_id=Os11g0108700;CGSNL Gene Symbol=LAC21;CGSNL Gene Name=LACCASE 21;Oryzabase Gene Symbol Synonym(s)=OsLAC21;Oryzabase Gene Name Synonym(s)=laccase 21;Note=Similar to Laccase-23.;Transcript_evidence=CT833689 (DDBJ%2C Best hit);ORF_evidence=Q2QYS3 (UniProt);GO=Biological Process: lignin catabolic process (GO:0046274),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: apoplast (GO:0048046),Molecular Function: copper ion binding (GO:0005507),Molecular Function: laccase activity (GO:0008471),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Multicopper oxidase%2C type 1 (IPR001117),Multicopper oxidase%2C copper-binding site (IPR002355),Cupredoxin (IPR008972),Multicopper oxidase%2C type 2 (IPR011706),Laccase (IPR017761);Oryzabase=18561;TENOR=Os11t0108700-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	395576	395779	.	+	.	Parent=Os11t0108700-00
Chr11	irgsp1_rep	CDS	395780	396760	.	+	0	Parent=Os11t0108700-00
Chr11	irgsp1_rep	three_prime_UTR	396761	396910	.	+	.	Parent=Os11t0108700-00
Chr11	irgsp1_rep	mRNA	397403	401779	.	-	.	ID=Os11t0108800-00;Name=Os11t0108800-00;Locus_id=Os11g0108800;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=CT831926 (DDBJ%2C Secondary hit);ORF_evidence=Q2RBK1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os11t0108800-00;KEGG=Os11t0108800-00
Chr11	irgsp1_rep	five_prime_UTR	401584	401779	.	-	.	Parent=Os11t0108800-00
Chr11	irgsp1_rep	five_prime_UTR	401395	401462	.	-	.	Parent=Os11t0108800-00
Chr11	irgsp1_rep	five_prime_UTR	401199	401307	.	-	.	Parent=Os11t0108800-00
Chr11	irgsp1_rep	five_prime_UTR	400593	400619	.	-	.	Parent=Os11t0108800-00
Chr11	irgsp1_rep	CDS	399937	400592	.	-	0	Parent=Os11t0108800-00
Chr11	irgsp1_rep	CDS	399720	399824	.	-	1	Parent=Os11t0108800-00
Chr11	irgsp1_rep	CDS	399514	399636	.	-	1	Parent=Os11t0108800-00
Chr11	irgsp1_rep	CDS	398953	399123	.	-	1	Parent=Os11t0108800-00
Chr11	irgsp1_rep	CDS	398683	398812	.	-	1	Parent=Os11t0108800-00
Chr11	irgsp1_rep	CDS	398329	398538	.	-	0	Parent=Os11t0108800-00
Chr11	irgsp1_rep	CDS	397819	397962	.	-	0	Parent=Os11t0108800-00
Chr11	irgsp1_rep	three_prime_UTR	397403	397818	.	-	.	Parent=Os11t0108800-00
Chr11	irgsp1_rep	mRNA	417575	421210	.	+	.	ID=Os11t0108932-01;Name=Os11t0108932-01;Locus_id=Os11g0108932;Oryzabase Gene Symbol Synonym(s)=OsFbox563%2C Os_F0773;Oryzabase Gene Name Synonym(s)=F-box protein 563;Note=Similar to Leucine Rich Repeat family protein%2C expressed.;Transcript_evidence=AK240876 (DDBJ%2C Best hit);ORF_evidence=Q2RBJ7 (UniProt);InterPro=Leucine-rich repeat%2C cysteine-containing subtype (IPR006553);NIAS_FLcDNA=J065026P18;Oryzabase=17332;TENOR=Os11t0108932-01;KEGG=Os11t0108932-01
Chr11	irgsp1_rep	five_prime_UTR	417575	417622	.	+	.	Parent=Os11t0108932-01
Chr11	irgsp1_rep	CDS	417623	418294	.	+	0	Parent=Os11t0108932-01
Chr11	irgsp1_rep	CDS	418754	418882	.	+	0	Parent=Os11t0108932-01
Chr11	irgsp1_rep	CDS	419194	419331	.	+	0	Parent=Os11t0108932-01
Chr11	irgsp1_rep	three_prime_UTR	419332	419905	.	+	.	Parent=Os11t0108932-01
Chr11	irgsp1_rep	three_prime_UTR	419986	420280	.	+	.	Parent=Os11t0108932-01
Chr11	irgsp1_rep	three_prime_UTR	420363	420611	.	+	.	Parent=Os11t0108932-01
Chr11	irgsp1_rep	three_prime_UTR	420781	421210	.	+	.	Parent=Os11t0108932-01
Chr11	irgsp1_rep	mRNA	417619	420613	.	-	.	ID=Os11t0108933-00;Name=Os11t0108933-00;Locus_id=Os11g0108933;Note=Hypothetical protein.;Transcript_evidence=tplb0046f21 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0108933-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	420358	420613	.	-	.	Parent=Os11t0108933-00
Chr11	irgsp1_rep	five_prime_UTR	419983	420271	.	-	.	Parent=Os11t0108933-00
Chr11	irgsp1_rep	five_prime_UTR	419368	419902	.	-	.	Parent=Os11t0108933-00
Chr11	irgsp1_rep	five_prime_UTR	419186	419288	.	-	.	Parent=Os11t0108933-00
Chr11	irgsp1_rep	five_prime_UTR	418753	418876	.	-	.	Parent=Os11t0108933-00
Chr11	irgsp1_rep	five_prime_UTR	418229	418293	.	-	.	Parent=Os11t0108933-00
Chr11	irgsp1_rep	CDS	417619	418228	.	-	0	Parent=Os11t0108933-00
Chr11	irgsp1_rep	mRNA	422275	425381	.	+	.	ID=Os11t0109000-01;Name=Os11t0109000-01;Locus_id=Os11g0109000;Oryzabase Gene Symbol Synonym(s)=OsPP2C73%2C PP2C73%2C OsPP116;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C73%2C protein phosphatase 2C 73%2C protein phosphatase 116;Note=Protein phosphatase 2C domain containing protein.;Transcript_evidence=AK063260 (DDBJ%2C Best hit);ORF_evidence=Q2RBJ6 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=001-113-A06;Oryzabase=18625;Expression=AK063260;TENOR=Os11t0109000-01;KEGG=Os11t0109000-01
Chr11	irgsp1_rep	five_prime_UTR	422275	422455	.	+	.	Parent=Os11t0109000-01
Chr11	irgsp1_rep	CDS	422456	422617	.	+	0	Parent=Os11t0109000-01
Chr11	irgsp1_rep	CDS	423353	423694	.	+	0	Parent=Os11t0109000-01
Chr11	irgsp1_rep	CDS	423931	424048	.	+	0	Parent=Os11t0109000-01
Chr11	irgsp1_rep	CDS	424129	424352	.	+	2	Parent=Os11t0109000-01
Chr11	irgsp1_rep	CDS	424708	425124	.	+	0	Parent=Os11t0109000-01
Chr11	irgsp1_rep	three_prime_UTR	425125	425381	.	+	.	Parent=Os11t0109000-01
Chr11	irgsp1_rep	mRNA	424568	425162	.	-	.	ID=Os11t0109050-01;Name=Os11t0109050-01;Locus_id=Os11g0109050;Note=Hypothetical gene.;Transcript_evidence=AK111363 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-181-H08;Expression=AK111363;TENOR=Os11t0109050-01;KEGG=Os11t0109050-01
Chr11	irgsp1_rep	five_prime_UTR	425161	425162	.	-	.	Parent=Os11t0109050-01
Chr11	irgsp1_rep	CDS	424876	425160	.	-	0	Parent=Os11t0109050-01
Chr11	irgsp1_rep	three_prime_UTR	424568	424875	.	-	.	Parent=Os11t0109050-01
Chr11	irgsp1_rep	mRNA	430444	431916	.	+	.	ID=Os11t0109200-00;Name=Os11t0109200-00;Locus_id=Os11g0109200;CGSNL Gene Symbol=DRM1A;CGSNL Gene Name=DOMAINS REARRANGED METHYLTRANSFERASE 1A;Oryzabase Gene Symbol Synonym(s)=OsDRM1a;Oryzabase Gene Name Synonym(s)=domains rearranged methyltransferase 1a%2C domains rearranged methylase 1a;Note=C-5 cytosine methyltransferase domain containing protein.;Transcript_evidence=AB524356 (DDBJ%2C Best hit);ORF_evidence=NP_001176307.1 (RefSeq);GO=Biological Process: DNA methylation (GO:0006306),Molecular Function: DNA binding (GO:0003677);InterPro=C-5 cytosine methyltransferase (IPR001525);Oryzabase=10397;TENOR=Os11t0109200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	430444	430507	.	+	.	Parent=Os11t0109200-00
Chr11	irgsp1_rep	CDS	430508	430560	.	+	0	Parent=Os11t0109200-00
Chr11	irgsp1_rep	CDS	431467	431916	.	+	1	Parent=Os11t0109200-00
Chr11	irgsp1_rep	mRNA	432463	434709	.	+	.	ID=Os11t0109301-00;Name=Os11t0109301-00;Locus_id=Os11g0109301;CGSNL Gene Symbol=DRM1A;CGSNL Gene Name=DOMAINS REARRANGED METHYLTRANSFERASE 1A;Oryzabase Gene Symbol Synonym(s)=OsDRM1a;Oryzabase Gene Name Synonym(s)=domains rearranged methyltransferase 1a%2C domains rearranged methylase 1a;Note=Conserved hypothetical protein.;Transcript_evidence=FP093915 (DDBJ);ORF_evidence=A3C7U9 (UniProt);Oryzabase=10397;TENOR=Os11t0109301-00
Chr11	irgsp1_rep	CDS	432463	432588	.	+	0	Parent=Os11t0109301-00
Chr11	irgsp1_rep	three_prime_UTR	432589	432620	.	+	.	Parent=Os11t0109301-00
Chr11	irgsp1_rep	three_prime_UTR	434285	434709	.	+	.	Parent=Os11t0109301-00
Chr11	irgsp1_rep	mRNA	435166	437936	.	+	.	ID=Os11t0109400-01;Name=Os11t0109400-01;Locus_id=Os11g0109400;CGSNL Gene Symbol=CHX7;CGSNL Gene Name=CATION/H+ EXCHANGER  7;Oryzabase Gene Symbol Synonym(s)=OsCHX07%2C CHX07%2C OsCHX7;Oryzabase Gene Name Synonym(s)=cation/H+ exchanger  7;Note=Cation/H+ exchanger domain containing protein.;Transcript_evidence=AK100300 (DDBJ%2C Best hit);ORF_evidence=Q2QYR3 (UniProt);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: solute:hydrogen antiporter activity (GO:0015299);InterPro=Cation/H+ exchanger (IPR006153);NIAS_FLcDNA=J023077P16;Oryzabase=22367;Expression=AK100300;TENOR=Os11t0109400-01;KEGG=Os11t0109400-01
Chr11	irgsp1_rep	five_prime_UTR	435166	435289	.	+	.	Parent=Os11t0109400-01
Chr11	irgsp1_rep	CDS	435290	437695	.	+	0	Parent=Os11t0109400-01
Chr11	irgsp1_rep	three_prime_UTR	437696	437936	.	+	.	Parent=Os11t0109400-01
Chr11	irgsp1_rep	mRNA	438856	444932	.	+	.	ID=Os11t0109500-01;Name=Os11t0109500-01;Locus_id=Os11g0109500;Note=Staphylococcal nuclease (SNase-like)%2C OB-fold domain containing protein.;Transcript_evidence=AK064326 (DDBJ%2C Best hit);ORF_evidence=A1KYZ0 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Staphylococcal nuclease (SNase-like) (IPR006021),Staphylococcal nuclease (SNase-like)%2C OB-fold (IPR016071);NIAS_FLcDNA=002-107-F06;Expression=AK064326;TENOR=Os11t0109500-01;KEGG=Os11t0109500-01
Chr11	irgsp1_rep	five_prime_UTR	438856	438996	.	+	.	Parent=Os11t0109500-01
Chr11	irgsp1_rep	CDS	438997	439227	.	+	0	Parent=Os11t0109500-01
Chr11	irgsp1_rep	CDS	439844	439899	.	+	0	Parent=Os11t0109500-01
Chr11	irgsp1_rep	CDS	441000	441114	.	+	1	Parent=Os11t0109500-01
Chr11	irgsp1_rep	CDS	441311	441421	.	+	0	Parent=Os11t0109500-01
Chr11	irgsp1_rep	CDS	443328	443515	.	+	0	Parent=Os11t0109500-01
Chr11	irgsp1_rep	CDS	443954	444010	.	+	1	Parent=Os11t0109500-01
Chr11	irgsp1_rep	CDS	444106	444216	.	+	1	Parent=Os11t0109500-01
Chr11	irgsp1_rep	CDS	444423	444433	.	+	1	Parent=Os11t0109500-01
Chr11	irgsp1_rep	CDS	444577	444632	.	+	2	Parent=Os11t0109500-01
Chr11	irgsp1_rep	three_prime_UTR	444633	444932	.	+	.	Parent=Os11t0109500-01
Chr11	irgsp1_rep	mRNA	445528	447931	.	-	.	ID=Os11t0109600-00;Name=Os11t0109600-00;Locus_id=Os11g0109600;Note=Hypothetical conserved gene.;Transcript_evidence=AK103426 (DDBJ%2C Secondary hit);ORF_evidence=NP_001065554.2 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);Expression=AK103426;TENOR=Os11t0109600-00;KEGG=Os11t0109600-00
Chr11	irgsp1_rep	five_prime_UTR	447926	447931	.	-	.	Parent=Os11t0109600-00
Chr11	irgsp1_rep	CDS	445988	447925	.	-	0	Parent=Os11t0109600-00
Chr11	irgsp1_rep	three_prime_UTR	445985	445987	.	-	.	Parent=Os11t0109600-00
Chr11	irgsp1_rep	three_prime_UTR	445739	445976	.	-	.	Parent=Os11t0109600-00
Chr11	irgsp1_rep	three_prime_UTR	445528	445728	.	-	.	Parent=Os11t0109600-00
Chr11	irgsp1_rep	mRNA	445977	447922	.	+	.	ID=Os11t0109616-00;Name=Os11t0109616-00;Locus_id=Os11g0109616;Note=Hypothetical protein.;Transcript_evidence=tplb0021n11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0109616-00
Chr11	irgsp1_rep	five_prime_UTR	445977	447356	.	+	.	Parent=Os11t0109616-00
Chr11	irgsp1_rep	five_prime_UTR	447470	447494	.	+	.	Parent=Os11t0109616-00
Chr11	irgsp1_rep	CDS	447495	447764	.	+	0	Parent=Os11t0109616-00
Chr11	irgsp1_rep	three_prime_UTR	447765	447922	.	+	.	Parent=Os11t0109616-00
Chr11	irgsp1_rep	mRNA	448403	449878	.	-	.	ID=Os11t0109633-00;Name=Os11t0109633-00;Locus_id=Os11g0109633;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001065554.2 (RefSeq);InterPro=Uncharacterised protein family Cys-rich (IPR006461),Protein of unknown function DUF2985 (IPR021369);TENOR=Os11t0109633-00;KEGG=Os11t0109633-00
Chr11	irgsp1_rep	CDS	448403	449878	.	-	0	Parent=Os11t0109633-00
Chr11	irgsp1_rep	mRNA	448539	449661	.	+	.	ID=Os11t0109666-00;Name=Os11t0109666-00;Locus_id=Os11g0109666;Note=Hypothetical protein.;Transcript_evidence=AK361165 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0109666-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	448539	448540	.	+	.	Parent=Os11t0109666-00
Chr11	irgsp1_rep	CDS	448541	449389	.	+	0	Parent=Os11t0109666-00
Chr11	irgsp1_rep	three_prime_UTR	449390	449661	.	+	.	Parent=Os11t0109666-00
Chr11	irgsp1_rep	mRNA	451777	453816	.	-	.	ID=Os11t0109700-01;Name=Os11t0109700-01;Locus_id=Os11g0109700;Note=Protein of unknown function Cys-rich family protein.;Transcript_evidence=AK059364 (DDBJ%2C Best hit);ORF_evidence=NP_001147528.1 (RefSeq);InterPro=Uncharacterised protein family Cys-rich (IPR006461),Protein of unknown function DUF2985 (IPR021369);NIAS_FLcDNA=001-026-E04;Expression=AK059364;TENOR=Os11t0109700-01;KEGG=Os11t0109700-01
Chr11	irgsp1_rep	five_prime_UTR	453749	453816	.	-	.	Parent=Os11t0109700-01
Chr11	irgsp1_rep	five_prime_UTR	453560	453597	.	-	.	Parent=Os11t0109700-01
Chr11	irgsp1_rep	CDS	451898	453559	.	-	0	Parent=Os11t0109700-01
Chr11	irgsp1_rep	three_prime_UTR	451777	451897	.	-	.	Parent=Os11t0109700-01
Chr11	irgsp1_rep	mRNA	451643	453709	.	-	.	ID=Os11t0109700-02;Name=Os11t0109700-02;Locus_id=Os11g0109700;Note=Protein of unknown function Cys-rich family protein.;Transcript_evidence=AK120107 (DDBJ%2C Best hit);ORF_evidence=NP_001147528.1 (RefSeq);InterPro=Uncharacterised protein family Cys-rich (IPR006461),Protein of unknown function DUF2985 (IPR021369);NIAS_FLcDNA=J013023K14;Expression=AK120107;TENOR=Os11t0109700-02;KEGG=Os11t0109700-02
Chr11	irgsp1_rep	five_prime_UTR	453560	453709	.	-	.	Parent=Os11t0109700-02
Chr11	irgsp1_rep	CDS	451898	453559	.	-	0	Parent=Os11t0109700-02
Chr11	irgsp1_rep	three_prime_UTR	451643	451897	.	-	.	Parent=Os11t0109700-02
Chr11	irgsp1_rep	mRNA	451635	453683	.	-	.	ID=Os11t0109700-03;Name=Os11t0109700-03;Locus_id=Os11g0109700;Note=Protein of unknown function Cys-rich family protein.;Transcript_evidence=AK065601 (DDBJ%2C Best hit);ORF_evidence=NP_001147528.1 (RefSeq);InterPro=Uncharacterised protein family Cys-rich (IPR006461),Protein of unknown function DUF2985 (IPR021369);NIAS_FLcDNA=J013028L18;Expression=AK065601;TENOR=Os11t0109700-03;KEGG=Os11t0109700-03
Chr11	irgsp1_rep	five_prime_UTR	453560	453683	.	-	.	Parent=Os11t0109700-03
Chr11	irgsp1_rep	CDS	451898	453559	.	-	0	Parent=Os11t0109700-03
Chr11	irgsp1_rep	three_prime_UTR	451635	451897	.	-	.	Parent=Os11t0109700-03
Chr11	irgsp1_rep	mRNA	451645	453519	.	-	.	ID=Os11t0109700-04;Name=Os11t0109700-04;Locus_id=Os11g0109700;Note=Similar to SAG20.;Transcript_evidence=AK072035 (DDBJ%2C Best hit);ORF_evidence=NP_001147528.1 (RefSeq);InterPro=Uncharacterised protein family Cys-rich (IPR006461),Protein of unknown function DUF2985 (IPR021369);NIAS_FLcDNA=J013100D03;Expression=AK072035;TENOR=Os11t0109700-04;KEGG=Os11t0109700-04
Chr11	irgsp1_rep	five_prime_UTR	453500	453519	.	-	.	Parent=Os11t0109700-04
Chr11	irgsp1_rep	CDS	451898	453499	.	-	0	Parent=Os11t0109700-04
Chr11	irgsp1_rep	three_prime_UTR	451645	451897	.	-	.	Parent=Os11t0109700-04
Chr11	irgsp1_rep	mRNA	454476	456860	.	+	.	ID=Os11t0109800-00;Name=Os11t0109800-00;Locus_id=Os11g0109800;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=EU950332 (DDBJ);ORF_evidence=NP_001065556.2 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os11t0109800-00;KEGG=Os11t0109800-00
Chr11	irgsp1_rep	CDS	454476	456860	.	+	0	Parent=Os11t0109800-00
Chr11	irgsp1_rep	mRNA	457195	461678	.	-	.	ID=Os11t0109900-01;Name=Os11t0109900-01;Locus_id=Os11g0109900;CGSNL Gene Symbol=DRB1A;CGSNL Gene Name=DSRNA-BINDING PROTEIN 1A;Oryzabase Gene Symbol Synonym(s)=OsDRB1a%2C DRB1a;Oryzabase Gene Name Synonym(s)=dsRNA-binding protein 1a;Note=Double-stranded RNA-binding-like domain containing protein.;Transcript_evidence=AK063961 (DDBJ%2C Best hit),AK121852 (DDBJ%2C Best hit);ORF_evidence=Q0IV63 (UniProt);GO=Biological Process: rRNA catabolic process (GO:0016075),Cellular Component: intracellular (GO:0005622),Molecular Function: RNA binding (GO:0003723),Molecular Function: double-stranded RNA binding (GO:0003725),Molecular Function: ribonuclease III activity (GO:0004525);InterPro=Double-stranded RNA-binding (IPR001159),Ribonuclease III%2C bacterial (IPR011907),Double-stranded RNA-binding-like (IPR014720);NIAS_FLcDNA=001-123-G10,J033101N14;Oryzabase=22063;TENOR=Os11t0109900-01
Chr11	irgsp1_rep	five_prime_UTR	461596	461678	.	-	.	Parent=Os11t0109900-01
Chr11	irgsp1_rep	CDS	461517	461595	.	-	0	Parent=Os11t0109900-01
Chr11	irgsp1_rep	CDS	460922	461181	.	-	2	Parent=Os11t0109900-01
Chr11	irgsp1_rep	CDS	458532	458745	.	-	0	Parent=Os11t0109900-01
Chr11	irgsp1_rep	CDS	457519	458387	.	-	2	Parent=Os11t0109900-01
Chr11	irgsp1_rep	three_prime_UTR	457195	457518	.	-	.	Parent=Os11t0109900-01
Chr11	irgsp1_rep	mRNA	462881	470169	.	-	.	ID=Os11t0109933-01;Name=Os11t0109933-01;Locus_id=Os11g0109933;RAP-DB Gene Name Synonym(s)=OsRaptor 1%2C Raptor 1;Oryzabase Gene Name Synonym(s)=OsRaptor 1%2C Raptor 1%2C Regulatory associated protein of TOR 1;Note=Component of TORC1(Target of rapamycin complex 1)%2C Modulation of thylakoid membrane biosynthesis and thylakoid grana modeling;Transcript_evidence=Inferred from literature;ORF_evidence=C7J8E5;GO=Biological Process: TOR signaling (GO:0031929),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515),Cellular Component: TORC1 complex (GO:0031931);InterPro=Regulatory associated protein of TOR (IPR004083),Raptor%2C N-terminal CASPase-like domain (IPR029347),Armadillo-type fold (IPR016024),Armadillo-like helical (IPR011989),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat (IPR001680);Manual Curation=July 28%2C 2016;Literature_PMID=25956502,27102613;Oryzabase=19882;TENOR=Os11t0109933-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	470096	470169	.	-	.	Parent=Os11t0109933-01
Chr11	irgsp1_rep	five_prime_UTR	469545	469555	.	-	.	Parent=Os11t0109933-01
Chr11	irgsp1_rep	CDS	469473	469544	.	-	0	Parent=Os11t0109933-01
Chr11	irgsp1_rep	CDS	469238	469396	.	-	0	Parent=Os11t0109933-01
Chr11	irgsp1_rep	CDS	469032	469148	.	-	0	Parent=Os11t0109933-01
Chr11	irgsp1_rep	CDS	468740	468897	.	-	0	Parent=Os11t0109933-01
Chr11	irgsp1_rep	CDS	468487	468641	.	-	1	Parent=Os11t0109933-01
Chr11	irgsp1_rep	CDS	468245	468389	.	-	2	Parent=Os11t0109933-01
Chr11	irgsp1_rep	CDS	468084	468162	.	-	1	Parent=Os11t0109933-01
Chr11	irgsp1_rep	CDS	467850	467951	.	-	0	Parent=Os11t0109933-01
Chr11	irgsp1_rep	CDS	467424	467507	.	-	0	Parent=Os11t0109933-01
Chr11	irgsp1_rep	CDS	467210	467320	.	-	0	Parent=Os11t0109933-01
Chr11	irgsp1_rep	CDS	466760	467113	.	-	0	Parent=Os11t0109933-01
Chr11	irgsp1_rep	CDS	466500	466680	.	-	0	Parent=Os11t0109933-01
Chr11	irgsp1_rep	CDS	465776	466387	.	-	2	Parent=Os11t0109933-01
Chr11	irgsp1_rep	CDS	465330	465656	.	-	2	Parent=Os11t0109933-01
Chr11	irgsp1_rep	CDS	465097	465217	.	-	2	Parent=Os11t0109933-01
Chr11	irgsp1_rep	CDS	464875	464999	.	-	1	Parent=Os11t0109933-01
Chr11	irgsp1_rep	CDS	464654	464793	.	-	2	Parent=Os11t0109933-01
Chr11	irgsp1_rep	CDS	464453	464554	.	-	0	Parent=Os11t0109933-01
Chr11	irgsp1_rep	CDS	464287	464372	.	-	0	Parent=Os11t0109933-01
Chr11	irgsp1_rep	CDS	464051	464135	.	-	1	Parent=Os11t0109933-01
Chr11	irgsp1_rep	CDS	463576	463917	.	-	0	Parent=Os11t0109933-01
Chr11	irgsp1_rep	three_prime_UTR	462881	463575	.	-	.	Parent=Os11t0109933-01
Chr11	irgsp1_rep	mRNA	462875	467662	.	-	.	ID=Os11t0109933-02;Name=Os11t0109933-02;Locus_id=Os11g0109933;RAP-DB Gene Name Synonym(s)=OsRaptor 1%2C Raptor 1;Oryzabase Gene Name Synonym(s)=OsRaptor 1%2C Raptor 1%2C Regulatory associated protein of TOR 1;Note=Similar to Transducin/WD-40 repeat protein (Fragment).;Transcript_evidence=AK318576 (DDBJ%2C Best hit);ORF_evidence=C7J8E5 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),Regulatory associated protein of TOR (IPR004083),WD40 repeat-like-containing domain (IPR011046),Armadillo-like helical (IPR011989),WD40/YVTN repeat-like-containing domain (IPR015943),Armadillo-type fold (IPR016024),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J090046K09;Oryzabase=19882;TENOR=Os11t0109933-01;KEGG=Os11t0109933-01
Chr11	irgsp1_rep	five_prime_UTR	467448	467662	.	-	.	Parent=Os11t0109933-02
Chr11	irgsp1_rep	CDS	467424	467447	.	-	0	Parent=Os11t0109933-02
Chr11	irgsp1_rep	CDS	467210	467320	.	-	0	Parent=Os11t0109933-02
Chr11	irgsp1_rep	CDS	466760	467113	.	-	0	Parent=Os11t0109933-02
Chr11	irgsp1_rep	CDS	466500	466680	.	-	0	Parent=Os11t0109933-02
Chr11	irgsp1_rep	CDS	465776	466387	.	-	2	Parent=Os11t0109933-02
Chr11	irgsp1_rep	CDS	465330	465656	.	-	2	Parent=Os11t0109933-02
Chr11	irgsp1_rep	CDS	465097	465220	.	-	2	Parent=Os11t0109933-02
Chr11	irgsp1_rep	CDS	464875	464999	.	-	1	Parent=Os11t0109933-02
Chr11	irgsp1_rep	CDS	464654	464793	.	-	2	Parent=Os11t0109933-02
Chr11	irgsp1_rep	CDS	464453	464554	.	-	0	Parent=Os11t0109933-02
Chr11	irgsp1_rep	CDS	464287	464372	.	-	0	Parent=Os11t0109933-02
Chr11	irgsp1_rep	CDS	464051	464135	.	-	1	Parent=Os11t0109933-02
Chr11	irgsp1_rep	CDS	463576	463917	.	-	0	Parent=Os11t0109933-02
Chr11	irgsp1_rep	three_prime_UTR	462875	463575	.	-	.	Parent=Os11t0109933-02
Chr11	irgsp1_rep	mRNA	471704	472348	.	-	.	ID=Os11t0109950-00;Name=Os11t0109950-00;Locus_id=Os11g0109950;Note=Hypothetical conserved gene.;Transcript_evidence=EU953906 (DDBJ);ORF_evidence=Q0IQN5 (UniProt);TENOR=Os11t0109950-00;KEGG=Os11t0109950-00
Chr11	irgsp1_rep	five_prime_UTR	472097	472348	.	-	.	Parent=Os11t0109950-00
Chr11	irgsp1_rep	CDS	471704	472096	.	-	0	Parent=Os11t0109950-00
Chr11	irgsp1_rep	mRNA	474434	480736	.	-	.	ID=Os11t0110000-01;Name=Os11t0110000-01;Locus_id=Os11g0110000;Note=Similar to predicted protein.;Transcript_evidence=AK242057 (DDBJ%2C Best hit);ORF_evidence=NP_850428.1 (RefSeq);NIAS_FLcDNA=J075126F08;TENOR=Os11t0110000-01;KEGG=Os11t0110000-01
Chr11	irgsp1_rep	five_prime_UTR	480572	480736	.	-	.	Parent=Os11t0110000-01
Chr11	irgsp1_rep	five_prime_UTR	480189	480193	.	-	.	Parent=Os11t0110000-01
Chr11	irgsp1_rep	CDS	480128	480188	.	-	0	Parent=Os11t0110000-01
Chr11	irgsp1_rep	CDS	479830	479949	.	-	2	Parent=Os11t0110000-01
Chr11	irgsp1_rep	CDS	479529	479727	.	-	2	Parent=Os11t0110000-01
Chr11	irgsp1_rep	CDS	479003	479131	.	-	1	Parent=Os11t0110000-01
Chr11	irgsp1_rep	CDS	478827	478878	.	-	1	Parent=Os11t0110000-01
Chr11	irgsp1_rep	CDS	478651	478746	.	-	0	Parent=Os11t0110000-01
Chr11	irgsp1_rep	CDS	478285	478572	.	-	0	Parent=Os11t0110000-01
Chr11	irgsp1_rep	CDS	477711	478193	.	-	0	Parent=Os11t0110000-01
Chr11	irgsp1_rep	three_prime_UTR	477147	477710	.	-	.	Parent=Os11t0110000-01
Chr11	irgsp1_rep	three_prime_UTR	476316	477042	.	-	.	Parent=Os11t0110000-01
Chr11	irgsp1_rep	three_prime_UTR	474434	475017	.	-	.	Parent=Os11t0110000-01
Chr11	irgsp1_rep	mRNA	477551	478575	.	+	.	ID=Os11t0110033-00;Name=Os11t0110033-00;Locus_id=Os11g0110033;Note=Hypothetical conserved gene.;Transcript_evidence=EU949682 (DDBJ);ORF_evidence=NP_001146442.1 (RefSeq);TENOR=Os11t0110033-00;KEGG=Os11t0110033-00
Chr11	irgsp1_rep	five_prime_UTR	477551	477826	.	+	.	Parent=Os11t0110033-00
Chr11	irgsp1_rep	CDS	477827	478006	.	+	0	Parent=Os11t0110033-00
Chr11	irgsp1_rep	three_prime_UTR	478007	478575	.	+	.	Parent=Os11t0110033-00
Chr11	irgsp1_rep	mRNA	481162	484697	.	-	.	ID=Os11t0110066-01;Name=Os11t0110066-01;Locus_id=Os11g0110066;Note=Hypothetical conserved gene.;Transcript_evidence=AK241654 (DDBJ%2C Best hit);ORF_evidence=B9G905 (UniProt);NIAS_FLcDNA=J065191E12;TENOR=Os11t0110066-01;KEGG=Os11t0110066-01
Chr11	irgsp1_rep	five_prime_UTR	484645	484697	.	-	.	Parent=Os11t0110066-01
Chr11	irgsp1_rep	CDS	484548	484644	.	-	0	Parent=Os11t0110066-01
Chr11	irgsp1_rep	CDS	484359	484448	.	-	2	Parent=Os11t0110066-01
Chr11	irgsp1_rep	CDS	483766	483860	.	-	2	Parent=Os11t0110066-01
Chr11	irgsp1_rep	CDS	483373	483444	.	-	0	Parent=Os11t0110066-01
Chr11	irgsp1_rep	CDS	483074	483115	.	-	0	Parent=Os11t0110066-01
Chr11	irgsp1_rep	CDS	482536	482685	.	-	0	Parent=Os11t0110066-01
Chr11	irgsp1_rep	CDS	482333	482450	.	-	0	Parent=Os11t0110066-01
Chr11	irgsp1_rep	CDS	481817	481901	.	-	2	Parent=Os11t0110066-01
Chr11	irgsp1_rep	CDS	481670	481740	.	-	1	Parent=Os11t0110066-01
Chr11	irgsp1_rep	CDS	481424	481578	.	-	2	Parent=Os11t0110066-01
Chr11	irgsp1_rep	three_prime_UTR	481162	481423	.	-	.	Parent=Os11t0110066-01
Chr11	irgsp1_rep	mRNA	484799	487545	.	+	.	ID=Os11t0110100-01;Name=Os11t0110100-01;Locus_id=Os11g0110100;Note=Similar to PTAC6 (PLASTID TRANSCRIPTIONALLY ACTIVE6).;Transcript_evidence=AK060105 (DDBJ%2C Best hit);ORF_evidence=NP_564144.1 (RefSeq);NIAS_FLcDNA=006-308-B06;Expression=AK060105;TENOR=Os11t0110100-01;KEGG=Os11t0110100-01
Chr11	irgsp1_rep	five_prime_UTR	484799	484898	.	+	.	Parent=Os11t0110100-01
Chr11	irgsp1_rep	CDS	484899	484905	.	+	0	Parent=Os11t0110100-01
Chr11	irgsp1_rep	CDS	485118	485347	.	+	2	Parent=Os11t0110100-01
Chr11	irgsp1_rep	CDS	485544	485612	.	+	0	Parent=Os11t0110100-01
Chr11	irgsp1_rep	CDS	485699	485803	.	+	0	Parent=Os11t0110100-01
Chr11	irgsp1_rep	CDS	486501	486620	.	+	0	Parent=Os11t0110100-01
Chr11	irgsp1_rep	CDS	486973	487062	.	+	0	Parent=Os11t0110100-01
Chr11	irgsp1_rep	CDS	487149	487265	.	+	0	Parent=Os11t0110100-01
Chr11	irgsp1_rep	three_prime_UTR	487266	487545	.	+	.	Parent=Os11t0110100-01
Chr11	irgsp1_rep	mRNA	488842	489971	.	-	.	ID=Os11t0110200-00;Name=Os11t0110200-00;Locus_id=Os11g0110200;Note=Conserved hypothetical protein.;Transcript_evidence=BT062221 (DDBJ);ORF_evidence=Q2RBI5 (UniProt);TENOR=Os11t0110200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	489384	489971	.	-	0	Parent=Os11t0110200-00
Chr11	irgsp1_rep	three_prime_UTR	489248	489383	.	-	.	Parent=Os11t0110200-00
Chr11	irgsp1_rep	three_prime_UTR	488842	489169	.	-	.	Parent=Os11t0110200-00
Chr11	irgsp1_rep	mRNA	531045	532220	.	+	.	ID=Os11t0110901-01;Name=Os11t0110901-01;Locus_id=Os11g0110901;Note=Hypothetical conserved gene.;Transcript_evidence=AK243283 (DDBJ%2C Best hit);ORF_evidence=B9G908 (UniProt);NIAS_FLcDNA=J100051M08;TENOR=Os11t0110901-01;KEGG=Os11t0110901-01
Chr11	irgsp1_rep	five_prime_UTR	531045	531045	.	+	.	Parent=Os11t0110901-01
Chr11	irgsp1_rep	CDS	531046	531395	.	+	0	Parent=Os11t0110901-01
Chr11	irgsp1_rep	CDS	531947	532106	.	+	1	Parent=Os11t0110901-01
Chr11	irgsp1_rep	three_prime_UTR	532107	532220	.	+	.	Parent=Os11t0110901-01
Chr11	irgsp1_rep	mRNA	532998	534481	.	-	.	ID=Os11t0111000-01;Name=Os11t0111000-01;Locus_id=Os11g0111000;Note=Conserved hypothetical protein.;Transcript_evidence=AK111408 (DDBJ%2C Best hit);ORF_evidence=B8BIP3 (UniProt);NIAS_FLcDNA=002-182-E11;Expression=AK111408;TENOR=Os11t0111000-01;KEGG=Os11t0111000-01
Chr11	irgsp1_rep	five_prime_UTR	534469	534481	.	-	.	Parent=Os11t0111000-01
Chr11	irgsp1_rep	CDS	533710	534468	.	-	0	Parent=Os11t0111000-01
Chr11	irgsp1_rep	three_prime_UTR	532998	533709	.	-	.	Parent=Os11t0111000-01
Chr11	irgsp1_rep	mRNA	534660	535274	.	+	.	ID=Os11t0111101-01;Name=Os11t0111101-01;Locus_id=Os11g0111101;Note=Similar to cDNA clone:J033057N11%2C full insert sequence.;Transcript_evidence=AK243555 (DDBJ%2C Best hit);ORF_evidence=B7ES31 (UniProt);NIAS_FLcDNA=J100079N19;TENOR=Os11t0111101-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	534660	534771	.	+	.	Parent=Os11t0111101-01
Chr11	irgsp1_rep	CDS	534772	535023	.	+	0	Parent=Os11t0111101-01
Chr11	irgsp1_rep	three_prime_UTR	535024	535274	.	+	.	Parent=Os11t0111101-01
Chr11	irgsp1_rep	mRNA	537008	538198	.	-	.	ID=Os11t0111200-01;Name=Os11t0111200-01;Locus_id=Os11g0111200;Note=Conserved hypothetical protein.;Transcript_evidence=AK109277 (DDBJ%2C Best hit);ORF_evidence=Q2RBH4 (UniProt);NIAS_FLcDNA=002-188-B01;TENOR=Os11t0111200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	538197	538198	.	-	.	Parent=Os11t0111200-01
Chr11	irgsp1_rep	CDS	537279	538196	.	-	0	Parent=Os11t0111200-01
Chr11	irgsp1_rep	three_prime_UTR	537008	537278	.	-	.	Parent=Os11t0111200-01
Chr11	irgsp1_rep	mRNA	552576	558648	.	+	.	ID=Os11t0111800-00;Name=Os11t0111800-00;Locus_id=Os11g0111800;Oryzabase Gene Symbol Synonym(s)=OsbHLH160%2C bHLH160%2C SIP19%2C OsSIP19;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 160%2C SKIP interacting protein 19%2C SKIPa-interacting protein 19%2C SKIPa-interacting protein 19;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8BNW1 (UniProt);Oryzabase=15431;TENOR=Os11t0111800-00;KEGG=Os11t0111800-00
Chr11	irgsp1_rep	CDS	552576	552659	.	+	0	Parent=Os11t0111800-00
Chr11	irgsp1_rep	CDS	553156	553272	.	+	0	Parent=Os11t0111800-00
Chr11	irgsp1_rep	CDS	558209	558400	.	+	0	Parent=Os11t0111800-00
Chr11	irgsp1_rep	CDS	558556	558648	.	+	0	Parent=Os11t0111800-00
Chr11	irgsp1_rep	mRNA	558812	560658	.	-	.	ID=Os11t0111900-01;Name=Os11t0111900-01;Locus_id=Os11g0111900;Note=BTB domain containing protein.;Transcript_evidence=AK061535 (DDBJ%2C Best hit),AK104218 (DDBJ%2C Best hit);ORF_evidence=B8Q8A5 (UniProt);NIAS_FLcDNA=006-310-F06,006-306-D04;TENOR=Os11t0111900-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	560546	560658	.	-	.	Parent=Os11t0111900-01
Chr11	irgsp1_rep	CDS	560357	560545	.	-	0	Parent=Os11t0111900-01
Chr11	irgsp1_rep	CDS	559506	559682	.	-	0	Parent=Os11t0111900-01
Chr11	irgsp1_rep	CDS	558949	559410	.	-	0	Parent=Os11t0111900-01
Chr11	irgsp1_rep	three_prime_UTR	558812	558948	.	-	.	Parent=Os11t0111900-01
Chr11	irgsp1_rep	mRNA	563239	563851	.	-	.	ID=Os11t0112000-01;Name=Os11t0112000-01;Locus_id=Os11g0112000;Oryzabase Gene Symbol Synonym(s)=OsHIGD3%2C HIGD3;Oryzabase Gene Name Synonym(s)=Hypoxia-Induced Gene Domain 3%2C Hypoxia-Induced Gene Domain Protein 3;Note=Similar to Hypoxia induced protein conserved region containing protein%2C expressed.;Transcript_evidence=AK240707 (DDBJ%2C Best hit);ORF_evidence=Q2RBG7 (UniProt);InterPro=Hypoxia induced protein%2C domain (IPR007667);NIAS_FLcDNA=J043021C11;Oryzabase=21340;TENOR=Os11t0112000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	563773	563851	.	-	.	Parent=Os11t0112000-01
Chr11	irgsp1_rep	CDS	563500	563772	.	-	0	Parent=Os11t0112000-01
Chr11	irgsp1_rep	three_prime_UTR	563239	563499	.	-	.	Parent=Os11t0112000-01
Chr11	irgsp1_rep	mRNA	563467	564396	.	+	.	ID=Os11t0112050-01;Name=Os11t0112050-01;Locus_id=Os11g0112050;Note=Conserved hypothetical protein.;Transcript_evidence=AK242044 (DDBJ%2C Best hit);ORF_evidence=NP_001176312.1 (RefSeq);NIAS_FLcDNA=J075120E08;TENOR=Os11t0112050-01;KEGG=Os11t0112050-01
Chr11	irgsp1_rep	five_prime_UTR	563467	563987	.	+	.	Parent=Os11t0112050-01
Chr11	irgsp1_rep	CDS	563988	564332	.	+	0	Parent=Os11t0112050-01
Chr11	irgsp1_rep	three_prime_UTR	564333	564396	.	+	.	Parent=Os11t0112050-01
Chr11	irgsp1_rep	mRNA	566240	568614	.	+	.	ID=Os11t0112100-00;Name=Os11t0112100-00;Locus_id=Os11g0112100;Note=Hypothetical conserved gene.;Transcript_evidence=CT835699 (DDBJ%2C Best hit);ORF_evidence=NP_001176313.1 (RefSeq);TENOR=Os11t0112100-00;KEGG=Os11t0112100-00
Chr11	irgsp1_rep	five_prime_UTR	566240	566346	.	+	.	Parent=Os11t0112100-00
Chr11	irgsp1_rep	CDS	566347	566593	.	+	0	Parent=Os11t0112100-00
Chr11	irgsp1_rep	CDS	566672	566822	.	+	2	Parent=Os11t0112100-00
Chr11	irgsp1_rep	CDS	567643	567690	.	+	1	Parent=Os11t0112100-00
Chr11	irgsp1_rep	CDS	568253	568409	.	+	1	Parent=Os11t0112100-00
Chr11	irgsp1_rep	three_prime_UTR	568410	568614	.	+	.	Parent=Os11t0112100-00
Chr11	irgsp1_rep	mRNA	571047	571806	.	-	.	ID=Os11t0112151-00;Name=Os11t0112151-00;Locus_id=Os11g0112151;Note=Non-protein coding transcript.;Transcript_evidence=FP097913 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0112151-00
Chr11	irgsp1_rep	exon	571612	571806	.	-	.	Parent=Os11t0112151-00
Chr11	irgsp1_rep	exon	571047	571183	.	-	.	Parent=Os11t0112151-00
Chr11	irgsp1_rep	mRNA	571319	573032	.	+	.	ID=Os11t0112200-01;Name=Os11t0112200-01;Locus_id=Os11g0112200;Oryzabase Gene Symbol Synonym(s)=prx131;Oryzabase Gene Name Synonym(s)=class III peroxidase 131;Note=Similar to Cationic peroxidase 1 precursor (EC 1.11.1.7) (PNPC1).;Transcript_evidence=AK108385 (DDBJ%2C Best hit);ORF_evidence=Q5U1F7 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=002-142-E11;Oryzabase=14647;Expression=AK108385;TENOR=Os11t0112200-01;KEGG=Os11t0112200-01 (EC:1.11.1.7)
Chr11	irgsp1_rep	five_prime_UTR	571319	571342	.	+	.	Parent=Os11t0112200-01
Chr11	irgsp1_rep	CDS	571343	571552	.	+	0	Parent=Os11t0112200-01
Chr11	irgsp1_rep	CDS	571638	571829	.	+	0	Parent=Os11t0112200-01
Chr11	irgsp1_rep	CDS	572093	572258	.	+	0	Parent=Os11t0112200-01
Chr11	irgsp1_rep	CDS	572485	572870	.	+	2	Parent=Os11t0112200-01
Chr11	irgsp1_rep	three_prime_UTR	572871	573032	.	+	.	Parent=Os11t0112200-01
Chr11	irgsp1_rep	mRNA	573569	574724	.	-	.	ID=Os11t0112300-01;Name=Os11t0112300-01;Locus_id=Os11g0112300;Note=Similar to GCN5L1 family protein.;Transcript_evidence=AK120830 (DDBJ%2C Best hit);ORF_evidence=NP_180592.1 (RefSeq);InterPro=GCN5-like 1 (IPR009395);NIAS_FLcDNA=J023019I07;TENOR=Os11t0112300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	574580	574724	.	-	.	Parent=Os11t0112300-01
Chr11	irgsp1_rep	CDS	574489	574579	.	-	0	Parent=Os11t0112300-01
Chr11	irgsp1_rep	CDS	574186	574391	.	-	2	Parent=Os11t0112300-01
Chr11	irgsp1_rep	CDS	573792	573881	.	-	0	Parent=Os11t0112300-01
Chr11	irgsp1_rep	three_prime_UTR	573569	573791	.	-	.	Parent=Os11t0112300-01
Chr11	irgsp1_rep	mRNA	583140	585568	.	+	.	ID=Os11t0112400-01;Name=Os11t0112400-01;Locus_id=Os11g0112400;Oryzabase Gene Symbol Synonym(s)=prx130%2C OsPRX2;Oryzabase Gene Name Synonym(s)=class III peroxidase 130;Note=Peroxidase (EC 1.11.1.7).;Transcript_evidence=AK242814 (DDBJ%2C Best hit);ORF_evidence=Q5U1F8 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J090061H15;Oryzabase=14646;TENOR=Os11t0112400-01;KEGG=Os11t0112400-01 (EC:1.11.1.7)
Chr11	irgsp1_rep	five_prime_UTR	583140	583207	.	+	.	Parent=Os11t0112400-01
Chr11	irgsp1_rep	CDS	583208	583432	.	+	0	Parent=Os11t0112400-01
Chr11	irgsp1_rep	CDS	583519	583710	.	+	0	Parent=Os11t0112400-01
Chr11	irgsp1_rep	CDS	583783	583948	.	+	0	Parent=Os11t0112400-01
Chr11	irgsp1_rep	CDS	585011	585402	.	+	2	Parent=Os11t0112400-01
Chr11	irgsp1_rep	three_prime_UTR	585403	585568	.	+	.	Parent=Os11t0112400-01
Chr11	irgsp1_rep	mRNA	587027	592215	.	-	.	ID=Os11t0112650-01;Name=Os11t0112650-01;Locus_id=Os11g0112650;Note=Hypothetical protein.;Transcript_evidence=AK288267 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J090016M24;TENOR=Os11t0112650-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	591368	592215	.	-	.	Parent=Os11t0112650-01
Chr11	irgsp1_rep	CDS	590954	591367	.	-	0	Parent=Os11t0112650-01
Chr11	irgsp1_rep	three_prime_UTR	587027	590953	.	-	.	Parent=Os11t0112650-01
Chr11	irgsp1_rep	mRNA	592270	594666	.	+	.	ID=Os11t0112800-01;Name=Os11t0112800-01;Locus_id=Os11g0112800;Note=Saposin-like domain containing protein.;Transcript_evidence=AK120247 (DDBJ%2C Best hit);ORF_evidence=B6T692 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629);InterPro=Saposin-like type B%2C 1 (IPR007856),Saposin B (IPR008139),Saposin-like (IPR011001);NIAS_FLcDNA=J013044M10;Expression=AK120247;TENOR=Os11t0112800-01;KEGG=Os11t0112800-01
Chr11	irgsp1_rep	five_prime_UTR	592270	592534	.	+	.	Parent=Os11t0112800-01
Chr11	irgsp1_rep	CDS	592535	592616	.	+	0	Parent=Os11t0112800-01
Chr11	irgsp1_rep	CDS	593408	593646	.	+	2	Parent=Os11t0112800-01
Chr11	irgsp1_rep	CDS	593838	593917	.	+	0	Parent=Os11t0112800-01
Chr11	irgsp1_rep	CDS	594311	594353	.	+	1	Parent=Os11t0112800-01
Chr11	irgsp1_rep	three_prime_UTR	594354	594666	.	+	.	Parent=Os11t0112800-01
Chr11	irgsp1_rep	mRNA	595380	600792	.	+	.	ID=Os11t0112900-01;Name=Os11t0112900-01;Locus_id=Os11g0112900;Note=Hypothetical conserved gene.;Transcript_evidence=AK242076 (DDBJ%2C Best hit);ORF_evidence=B9G911 (UniProt);NIAS_FLcDNA=J075136I07;TENOR=Os11t0112900-01;KEGG=Os11t0112900-01
Chr11	irgsp1_rep	five_prime_UTR	595380	595447	.	+	.	Parent=Os11t0112900-01
Chr11	irgsp1_rep	CDS	595448	595564	.	+	0	Parent=Os11t0112900-01
Chr11	irgsp1_rep	CDS	595653	595817	.	+	0	Parent=Os11t0112900-01
Chr11	irgsp1_rep	CDS	596629	596707	.	+	0	Parent=Os11t0112900-01
Chr11	irgsp1_rep	CDS	596882	596904	.	+	2	Parent=Os11t0112900-01
Chr11	irgsp1_rep	three_prime_UTR	596905	596968	.	+	.	Parent=Os11t0112900-01
Chr11	irgsp1_rep	three_prime_UTR	597055	597123	.	+	.	Parent=Os11t0112900-01
Chr11	irgsp1_rep	three_prime_UTR	597214	597310	.	+	.	Parent=Os11t0112900-01
Chr11	irgsp1_rep	three_prime_UTR	597396	597498	.	+	.	Parent=Os11t0112900-01
Chr11	irgsp1_rep	three_prime_UTR	597795	598011	.	+	.	Parent=Os11t0112900-01
Chr11	irgsp1_rep	three_prime_UTR	598140	598253	.	+	.	Parent=Os11t0112900-01
Chr11	irgsp1_rep	three_prime_UTR	599051	599182	.	+	.	Parent=Os11t0112900-01
Chr11	irgsp1_rep	three_prime_UTR	599477	599557	.	+	.	Parent=Os11t0112900-01
Chr11	irgsp1_rep	three_prime_UTR	600129	600245	.	+	.	Parent=Os11t0112900-01
Chr11	irgsp1_rep	three_prime_UTR	600342	600792	.	+	.	Parent=Os11t0112900-01
Chr11	irgsp1_rep	mRNA	595445	595819	.	-	.	ID=Os11t0112966-00;Name=Os11t0112966-00;Locus_id=Os11g0112966;Note=Non-protein coding transcript.;Transcript_evidence=EU968274 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0112966-00
Chr11	irgsp1_rep	exon	595668	595819	.	-	.	Parent=Os11t0112966-00
Chr11	irgsp1_rep	exon	595445	595608	.	-	.	Parent=Os11t0112966-00
Chr11	irgsp1_rep	mRNA	602121	602646	.	+	.	ID=Os11t0113032-01;Name=Os11t0113032-01;Locus_id=Os11g0113032;Note=Hypothetical gene.;Transcript_evidence=AK288155 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J080320A18;TENOR=Os11t0113032-01;KEGG=Os11t0113032-01
Chr11	irgsp1_rep	five_prime_UTR	602121	602419	.	+	.	Parent=Os11t0113032-01
Chr11	irgsp1_rep	CDS	602420	602632	.	+	0	Parent=Os11t0113032-01
Chr11	irgsp1_rep	three_prime_UTR	602633	602646	.	+	.	Parent=Os11t0113032-01
Chr11	irgsp1_rep	mRNA	602587	606841	.	-	.	ID=Os11t0113100-01;Name=Os11t0113100-01;Locus_id=Os11g0113100;Oryzabase Gene Symbol Synonym(s)=OsPP117;Oryzabase Gene Name Synonym(s)=Protein phosphatase 117;Note=Protein-tyrosine phosphatase%2C dual specificity domain containing protein.;Transcript_evidence=AK072567 (DDBJ%2C Best hit);ORF_evidence=Q2QYN1 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Biological Process: dephosphorylation (GO:0016311),Molecular Function: protein tyrosine/serine/threonine phosphatase activity (GO:0008138),Molecular Function: phosphatase activity (GO:0016791);InterPro=Dual specificity phosphatase%2C catalytic domain (IPR000340),Protein-tyrosine/Dual-specificity phosphatase (IPR000387),Dual specificity phosphatase%2C subgroup%2C catalytic domain (IPR020422);NIAS_FLcDNA=J023127J23;Oryzabase=18657;Expression=AK072567;TENOR=Os11t0113100-01;KEGG=Os11t0113100-01
Chr11	irgsp1_rep	five_prime_UTR	606690	606841	.	-	.	Parent=Os11t0113100-01
Chr11	irgsp1_rep	CDS	606455	606689	.	-	0	Parent=Os11t0113100-01
Chr11	irgsp1_rep	CDS	604159	604364	.	-	2	Parent=Os11t0113100-01
Chr11	irgsp1_rep	CDS	603475	603645	.	-	0	Parent=Os11t0113100-01
Chr11	irgsp1_rep	CDS	603190	603393	.	-	0	Parent=Os11t0113100-01
Chr11	irgsp1_rep	three_prime_UTR	602587	603189	.	-	.	Parent=Os11t0113100-01
Chr11	irgsp1_rep	mRNA	604878	605569	.	+	.	ID=Os11t0113150-01;Name=Os11t0113150-01;Locus_id=Os11g0113150;Note=Hypothetical gene.;Transcript_evidence=AK242500 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J080308K20;TENOR=Os11t0113150-01;KEGG=Os11t0113150-01
Chr11	irgsp1_rep	five_prime_UTR	604878	605113	.	+	.	Parent=Os11t0113150-01
Chr11	irgsp1_rep	CDS	605114	605329	.	+	0	Parent=Os11t0113150-01
Chr11	irgsp1_rep	three_prime_UTR	605330	605569	.	+	.	Parent=Os11t0113150-01
Chr11	irgsp1_rep	mRNA	609610	615686	.	+	.	ID=Os11t0113200-01;Name=Os11t0113200-01;Locus_id=Os11g0113200;Note=Hypothetical conserved gene.;Transcript_evidence=AK243543 (DDBJ%2C Best hit);ORF_evidence=B8BP09 (UniProt);NIAS_FLcDNA=J100078K06;TENOR=Os11t0113200-01;KEGG=Os11t0113200-01
Chr11	irgsp1_rep	five_prime_UTR	609610	609954	.	+	.	Parent=Os11t0113200-01
Chr11	irgsp1_rep	CDS	609955	611310	.	+	0	Parent=Os11t0113200-01
Chr11	irgsp1_rep	CDS	611442	612367	.	+	0	Parent=Os11t0113200-01
Chr11	irgsp1_rep	CDS	615035	615173	.	+	1	Parent=Os11t0113200-01
Chr11	irgsp1_rep	three_prime_UTR	615174	615686	.	+	.	Parent=Os11t0113200-01
Chr11	irgsp1_rep	mRNA	618043	620379	.	+	.	ID=Os11t0113300-01;Name=Os11t0113300-01;Locus_id=Os11g0113300;Note=Conserved hypothetical protein.;Transcript_evidence=AK073235 (DDBJ%2C Best hit);ORF_evidence=A2ZAR5 (UniProt);NIAS_FLcDNA=J033020F07;Expression=AK073235;TENOR=Os11t0113300-01;KEGG=Os11t0113300-01
Chr11	irgsp1_rep	five_prime_UTR	618043	618436	.	+	.	Parent=Os11t0113300-01
Chr11	irgsp1_rep	CDS	618437	618589	.	+	0	Parent=Os11t0113300-01
Chr11	irgsp1_rep	CDS	620007	620123	.	+	0	Parent=Os11t0113300-01
Chr11	irgsp1_rep	three_prime_UTR	620124	620379	.	+	.	Parent=Os11t0113300-01
Chr11	irgsp1_rep	mRNA	630585	633622	.	-	.	ID=Os11t0113700-01;Name=Os11t0113700-01;Locus_id=Os11g0113700;RAP-DB Gene Symbol Synonym(s)=CIPK15%2C OsCIPK15;RAP-DB Gene Name Synonym(s)=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 15%2C CBL-interacting protein kinase 15;CGSNL Gene Symbol=CIPK15;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 15;Oryzabase Gene Symbol Synonym(s)=OsCIPK15;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 15;Note=Serine/threonine protein kinase%2C Abiotic stresses;Transcript_evidence=AK121773 (DDBJ);ORF_evidence=Q2RBF0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Kinase-associated KA1 (IPR001772),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),NAF domain (IPR004041),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),NAF/FISL domain (IPR018451),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033092J11;Manual Curation=July 13%2C 2010;Literature_PMID=17535819,20357140;Oryzabase=7402;TENOR=Os11t0113700-01;KEGG=Os11t0113700-01 (EC:2.7.11.11)
Chr11	irgsp1_rep	five_prime_UTR	633490	633622	.	-	.	Parent=Os11t0113700-01
Chr11	irgsp1_rep	five_prime_UTR	632188	632494	.	-	.	Parent=Os11t0113700-01
Chr11	irgsp1_rep	CDS	630883	632187	.	-	0	Parent=Os11t0113700-01
Chr11	irgsp1_rep	three_prime_UTR	630585	630882	.	-	.	Parent=Os11t0113700-01
Chr11	irgsp1_rep	mRNA	630585	632496	.	-	.	ID=Os11t0113700-02;Name=Os11t0113700-02;Locus_id=Os11g0113700;RAP-DB Gene Symbol Synonym(s)=CIPK15%2C OsCIPK15;RAP-DB Gene Name Synonym(s)=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 15%2C Oryza sativa calcineurin B-like (CBL) protein-interacting protein kinase 15%2C CBL-interacting protein kinase 15;CGSNL Gene Symbol=CIPK15;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 15;Oryzabase Gene Symbol Synonym(s)=OsCIPK15;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 15;Note=Serine/threonine protein kinase%2C Microbe-assosiated molecular pattern (MAMP)-induced defense signaling pathway;Transcript_evidence=AB264037 (DDBJ);ORF_evidence=Q2RBF0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Kinase-associated KA1 (IPR001772),Serine/threonine- / dual-specificity protein kinase%2C catalytic  domain (IPR002290),NAF domain (IPR004041),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),NAF/FISL domain (IPR018451),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Manual Curation=July 13%2C 2010;Literature_PMID=17535819,20357140;Oryzabase=7402;TENOR=Os11t0113700-02
Chr11	irgsp1_rep	five_prime_UTR	632188	632496	.	-	.	Parent=Os11t0113700-02
Chr11	irgsp1_rep	CDS	630883	632187	.	-	0	Parent=Os11t0113700-02
Chr11	irgsp1_rep	three_prime_UTR	630585	630882	.	-	.	Parent=Os11t0113700-02
Chr11	irgsp1_rep	mRNA	641561	642962	.	-	.	ID=Os11t0113900-00;Name=Os11t0113900-00;Locus_id=Os11g0113900;Note=Similar to Zinc finger%2C C3HC4 type family protein.;Transcript_evidence=AK362806 (DDBJ);ORF_evidence=Q2RBE9 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os11t0113900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	642785	642962	.	-	.	Parent=Os11t0113900-00
Chr11	irgsp1_rep	CDS	642775	642784	.	-	0	Parent=Os11t0113900-00
Chr11	irgsp1_rep	CDS	641561	641940	.	-	2	Parent=Os11t0113900-00
Chr11	irgsp1_rep	mRNA	642577	642987	.	+	.	ID=Os11t0114000-00;Name=Os11t0114000-00;Locus_id=Os11g0114000;Note=Similar to Zinc finger%2C C3HC4 type family protein.;Transcript_evidence=EU974808 (DDBJ);ORF_evidence=Q2RBE8 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os11t0114000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	642577	642981	.	+	0	Parent=Os11t0114000-00
Chr11	irgsp1_rep	three_prime_UTR	642982	642987	.	+	.	Parent=Os11t0114000-00
Chr11	irgsp1_rep	mRNA	646980	649063	.	+	.	ID=Os11t0114150-01;Name=Os11t0114150-01;Locus_id=Os11g0114150;Note=Protein of unknown function DUF641%2C plant domain containing protein.;Transcript_evidence=AK241180 (DDBJ%2C Best hit);ORF_evidence=NP_001065575.2 (RefSeq);InterPro=Domain of unknown function DUF641%2C plant (IPR006943);NIAS_FLcDNA=J065119C11;TENOR=Os11t0114150-01;KEGG=Os11t0114150-01
Chr11	irgsp1_rep	five_prime_UTR	646980	647138	.	+	.	Parent=Os11t0114150-01
Chr11	irgsp1_rep	five_prime_UTR	647602	647606	.	+	.	Parent=Os11t0114150-01
Chr11	irgsp1_rep	CDS	647607	648875	.	+	0	Parent=Os11t0114150-01
Chr11	irgsp1_rep	three_prime_UTR	648876	649063	.	+	.	Parent=Os11t0114150-01
Chr11	irgsp1_rep	mRNA	651483	652048	.	+	.	ID=Os11t0114300-01;Name=Os11t0114300-01;Locus_id=Os11g0114300;Note=Conserved hypothetical protein.;Transcript_evidence=AK106364 (DDBJ%2C Best hit);ORF_evidence=B9G915 (UniProt);NIAS_FLcDNA=002-102-B05;TENOR=Os11t0114300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	651483	651830	.	+	0	Parent=Os11t0114300-01
Chr11	irgsp1_rep	three_prime_UTR	651831	652048	.	+	.	Parent=Os11t0114300-01
Chr11	irgsp1_rep	mRNA	655238	661236	.	-	.	ID=Os11t0114600-01;Name=Os11t0114600-01;Locus_id=Os11g0114600;CGSNL Gene Symbol=WNK7;CGSNL Gene Name=WITH NO LYSINE KINASE 7;Oryzabase Gene Symbol Synonym(s)=OsWNK7;Oryzabase Gene Name Synonym(s)=With No Lysine kinase 7%2C WNK protein kinase 7%2C WNK kinase 7;Note=Similar to cDNA clone:J013107M03%2C full insert sequence.;Transcript_evidence=AK071885 (DDBJ%2C Best hit);ORF_evidence=B7EDH7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013048E13;Oryzabase=20442;TENOR=Os11t0114600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	660186	661236	.	-	.	Parent=Os11t0114600-01
Chr11	irgsp1_rep	CDS	660078	660185	.	-	0	Parent=Os11t0114600-01
Chr11	irgsp1_rep	CDS	656876	658184	.	-	0	Parent=Os11t0114600-01
Chr11	irgsp1_rep	CDS	655459	655910	.	-	2	Parent=Os11t0114600-01
Chr11	irgsp1_rep	three_prime_UTR	655238	655458	.	-	.	Parent=Os11t0114600-01
Chr11	irgsp1_rep	mRNA	655098	660395	.	-	.	ID=Os11t0114600-02;Name=Os11t0114600-02;Locus_id=Os11g0114600;CGSNL Gene Symbol=WNK7;CGSNL Gene Name=WITH NO LYSINE KINASE 7;Oryzabase Gene Symbol Synonym(s)=OsWNK7;Oryzabase Gene Name Synonym(s)=With No Lysine kinase 7%2C WNK protein kinase 7%2C WNK kinase 7;Note=Similar to cDNA clone:J013107M03%2C full insert sequence.;Transcript_evidence=AK071924 (DDBJ%2C Best hit);ORF_evidence=B7EDH7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013069M21;Oryzabase=20442;TENOR=Os11t0114600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	658251	660395	.	-	.	Parent=Os11t0114600-02
Chr11	irgsp1_rep	CDS	656876	658250	.	-	0	Parent=Os11t0114600-02
Chr11	irgsp1_rep	CDS	655459	655910	.	-	2	Parent=Os11t0114600-02
Chr11	irgsp1_rep	three_prime_UTR	655098	655458	.	-	.	Parent=Os11t0114600-02
Chr11	irgsp1_rep	mRNA	664534	671701	.	-	.	ID=Os11t0114700-01;Name=Os11t0114700-01;Locus_id=Os11g0114700;CGSNL Gene Symbol=NTP11;CGSNL Gene Name=NUCLEOTIDYL TRANSFERASE PROTEIN 11;Oryzabase Gene Symbol Synonym(s)=OsNTP11;Oryzabase Gene Name Synonym(s)=nucleotidyl transferase protein 11;Note=PAP/25A core domain containing protein.;Transcript_evidence=AK066583 (DDBJ%2C Best hit);ORF_evidence=B8BIQ4 (UniProt);InterPro=PAP/25A-associated (IPR002058);NIAS_FLcDNA=J013072K15;Oryzabase=21893;Expression=AK066583;TENOR=Os11t0114700-01;KEGG=Os11t0114700-01
Chr11	irgsp1_rep	five_prime_UTR	671290	671701	.	-	.	Parent=Os11t0114700-01
Chr11	irgsp1_rep	CDS	671074	671289	.	-	0	Parent=Os11t0114700-01
Chr11	irgsp1_rep	CDS	669090	669272	.	-	0	Parent=Os11t0114700-01
Chr11	irgsp1_rep	CDS	668512	668604	.	-	0	Parent=Os11t0114700-01
Chr11	irgsp1_rep	CDS	668139	668321	.	-	0	Parent=Os11t0114700-01
Chr11	irgsp1_rep	CDS	667940	668042	.	-	0	Parent=Os11t0114700-01
Chr11	irgsp1_rep	CDS	667659	667844	.	-	2	Parent=Os11t0114700-01
Chr11	irgsp1_rep	CDS	666046	667004	.	-	2	Parent=Os11t0114700-01
Chr11	irgsp1_rep	CDS	665077	665501	.	-	0	Parent=Os11t0114700-01
Chr11	irgsp1_rep	CDS	664715	664772	.	-	1	Parent=Os11t0114700-01
Chr11	irgsp1_rep	three_prime_UTR	664534	664714	.	-	.	Parent=Os11t0114700-01
Chr11	irgsp1_rep	mRNA	663981	671679	.	-	.	ID=Os11t0114700-02;Name=Os11t0114700-02;Locus_id=Os11g0114700;CGSNL Gene Symbol=NTP11;CGSNL Gene Name=NUCLEOTIDYL TRANSFERASE PROTEIN 11;Oryzabase Gene Symbol Synonym(s)=OsNTP11;Oryzabase Gene Name Synonym(s)=nucleotidyl transferase protein 11;Note=PAP/25A core domain containing protein.;Transcript_evidence=AK070834 (DDBJ%2C Best hit);ORF_evidence=B8BIQ4 (UniProt);InterPro=PAP/25A-associated (IPR002058);NIAS_FLcDNA=J023073C11;Oryzabase=21893;TENOR=Os11t0114700-02
Chr11	irgsp1_rep	five_prime_UTR	671290	671679	.	-	.	Parent=Os11t0114700-02
Chr11	irgsp1_rep	CDS	671074	671289	.	-	0	Parent=Os11t0114700-02
Chr11	irgsp1_rep	CDS	669090	669272	.	-	0	Parent=Os11t0114700-02
Chr11	irgsp1_rep	CDS	668512	668604	.	-	0	Parent=Os11t0114700-02
Chr11	irgsp1_rep	CDS	668139	668321	.	-	0	Parent=Os11t0114700-02
Chr11	irgsp1_rep	CDS	667940	668042	.	-	0	Parent=Os11t0114700-02
Chr11	irgsp1_rep	CDS	667659	667844	.	-	2	Parent=Os11t0114700-02
Chr11	irgsp1_rep	CDS	666046	667004	.	-	2	Parent=Os11t0114700-02
Chr11	irgsp1_rep	CDS	665077	665501	.	-	0	Parent=Os11t0114700-02
Chr11	irgsp1_rep	CDS	664715	664772	.	-	1	Parent=Os11t0114700-02
Chr11	irgsp1_rep	three_prime_UTR	663981	664714	.	-	.	Parent=Os11t0114700-02
Chr11	irgsp1_rep	mRNA	665262	671668	.	-	.	ID=Os11t0114700-03;Name=Os11t0114700-03;Locus_id=Os11g0114700;CGSNL Gene Symbol=NTP11;CGSNL Gene Name=NUCLEOTIDYL TRANSFERASE PROTEIN 11;Oryzabase Gene Symbol Synonym(s)=OsNTP11;Oryzabase Gene Name Synonym(s)=nucleotidyl transferase protein 11;Note=Similar to cDNA%2C clone: J090093C10%2C full insert sequence.;Transcript_evidence=AK072543 (DDBJ%2C Best hit);ORF_evidence=Q2RBE1 (UniProt);InterPro=PAP/25A-associated (IPR002058);NIAS_FLcDNA=J023131I22;Oryzabase=21893;Expression=AK072543;TENOR=Os11t0114700-03;KEGG=Os11t0114700-03
Chr11	irgsp1_rep	five_prime_UTR	671290	671668	.	-	.	Parent=Os11t0114700-03
Chr11	irgsp1_rep	CDS	671074	671289	.	-	0	Parent=Os11t0114700-03
Chr11	irgsp1_rep	CDS	669090	669272	.	-	0	Parent=Os11t0114700-03
Chr11	irgsp1_rep	CDS	668512	668604	.	-	0	Parent=Os11t0114700-03
Chr11	irgsp1_rep	CDS	668139	668321	.	-	0	Parent=Os11t0114700-03
Chr11	irgsp1_rep	CDS	667940	668042	.	-	0	Parent=Os11t0114700-03
Chr11	irgsp1_rep	CDS	667659	667844	.	-	2	Parent=Os11t0114700-03
Chr11	irgsp1_rep	CDS	666046	667004	.	-	2	Parent=Os11t0114700-03
Chr11	irgsp1_rep	CDS	665262	665501	.	-	0	Parent=Os11t0114700-03
Chr11	irgsp1_rep	mRNA	663975	671285	.	-	.	ID=Os11t0114700-04;Name=Os11t0114700-04;Locus_id=Os11g0114700;CGSNL Gene Symbol=NTP11;CGSNL Gene Name=NUCLEOTIDYL TRANSFERASE PROTEIN 11;Oryzabase Gene Symbol Synonym(s)=OsNTP11;Oryzabase Gene Name Synonym(s)=nucleotidyl transferase protein 11;Note=PAP/25A-associated domain containing protein.;Transcript_evidence=AK065865 (DDBJ%2C Best hit);ORF_evidence=B8BIQ4 (UniProt);InterPro=PAP/25A-associated (IPR002058);NIAS_FLcDNA=J013045I09;Oryzabase=21893;TENOR=Os11t0114700-04
Chr11	irgsp1_rep	five_prime_UTR	671284	671285	.	-	.	Parent=Os11t0114700-04
Chr11	irgsp1_rep	CDS	671074	671283	.	-	0	Parent=Os11t0114700-04
Chr11	irgsp1_rep	CDS	669090	669272	.	-	0	Parent=Os11t0114700-04
Chr11	irgsp1_rep	CDS	668512	668604	.	-	0	Parent=Os11t0114700-04
Chr11	irgsp1_rep	CDS	668139	668321	.	-	0	Parent=Os11t0114700-04
Chr11	irgsp1_rep	CDS	667940	668042	.	-	0	Parent=Os11t0114700-04
Chr11	irgsp1_rep	CDS	667659	667844	.	-	2	Parent=Os11t0114700-04
Chr11	irgsp1_rep	CDS	666046	667004	.	-	2	Parent=Os11t0114700-04
Chr11	irgsp1_rep	CDS	665077	665501	.	-	0	Parent=Os11t0114700-04
Chr11	irgsp1_rep	CDS	664715	664772	.	-	1	Parent=Os11t0114700-04
Chr11	irgsp1_rep	three_prime_UTR	663975	664714	.	-	.	Parent=Os11t0114700-04
Chr11	irgsp1_rep	mRNA	671595	673208	.	+	.	ID=Os11t0114800-00;Name=Os11t0114800-00;Locus_id=Os11g0114800;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2RBE0 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);TENOR=Os11t0114800-00;KEGG=Os11t0114800-00
Chr11	irgsp1_rep	CDS	671595	673208	.	+	0	Parent=Os11t0114800-00
Chr11	irgsp1_rep	mRNA	680034	680884	.	+	.	ID=Os11t0114900-01;Name=Os11t0114900-01;Locus_id=Os11g0114900;Oryzabase Gene Symbol Synonym(s)=OsLTP1.8%2C OsLtpI.8;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein 1.8%2C lipid transfer protein 1.8%2C type 1 non-specific lipid transfer protein 8%2C Phospholipid transfer protein 9C2;Note=Similar to Nonspecific lipid-transfer protein (LTP) (Fragment).;Transcript_evidence=AK063683 (DDBJ%2C Best hit);ORF_evidence=A3C7Z0 (UniProt);GO=Biological Process: lipid transport (GO:0006869),Molecular Function: lipid binding (GO:0008289);InterPro=Plant lipid transfer protein/Par allergen (IPR000528),Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=001-119-E10;Oryzabase=13517;Expression=AK063683;TENOR=Os11t0114900-01;KEGG=Os11t0114900-01
Chr11	irgsp1_rep	five_prime_UTR	680034	680120	.	+	.	Parent=Os11t0114900-01
Chr11	irgsp1_rep	CDS	680121	680470	.	+	0	Parent=Os11t0114900-01
Chr11	irgsp1_rep	CDS	680577	680586	.	+	1	Parent=Os11t0114900-01
Chr11	irgsp1_rep	three_prime_UTR	680587	680884	.	+	.	Parent=Os11t0114900-01
Chr11	irgsp1_rep	mRNA	684777	685551	.	+	.	ID=Os11t0115100-01;Name=Os11t0115100-01;Locus_id=Os11g0115100;Oryzabase Gene Symbol Synonym(s)=OsLTP1.9%2C OsLtpI.9;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein 1.9%2C lipid transfer protein 1.9%2C type 1 non-specific lipid transfer protein 9;Note=Similar to Lipid transfer protein.;Transcript_evidence=AK119692 (DDBJ%2C Best hit),AK119677 (DDBJ%2C Best hit);ORF_evidence=B7E4W9 (UniProt);GO=Biological Process: lipid transport (GO:0006869),Molecular Function: lipid binding (GO:0008289);InterPro=Plant lipid transfer protein/Par allergen (IPR000528),Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=002-157-B12,002-156-H07;Oryzabase=13518;TENOR=Os11t0115100-01
Chr11	irgsp1_rep	five_prime_UTR	684777	684866	.	+	.	Parent=Os11t0115100-01
Chr11	irgsp1_rep	CDS	684867	685222	.	+	0	Parent=Os11t0115100-01
Chr11	irgsp1_rep	CDS	685313	685322	.	+	1	Parent=Os11t0115100-01
Chr11	irgsp1_rep	three_prime_UTR	685323	685551	.	+	.	Parent=Os11t0115100-01
Chr11	irgsp1_rep	mRNA	686472	687461	.	+	.	ID=Os11t0115301-00;Name=Os11t0115301-00;Locus_id=Os11g0115301;Note=Conserved hypothetical protein.;Transcript_evidence=AK363349 (DDBJ);ORF_evidence=NP_001067268.1 (RefSeq);TENOR=Os11t0115301-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	686472	686591	.	+	.	Parent=Os11t0115301-00
Chr11	irgsp1_rep	CDS	686592	686660	.	+	0	Parent=Os11t0115301-00
Chr11	irgsp1_rep	CDS	686957	687307	.	+	0	Parent=Os11t0115301-00
Chr11	irgsp1_rep	three_prime_UTR	687308	687461	.	+	.	Parent=Os11t0115301-00
Chr11	irgsp1_rep	mRNA	693326	694254	.	+	.	ID=Os11t0115350-01;Name=Os11t0115350-01;Locus_id=Os11g0115350;CGSNL Gene Symbol=LTP1;CGSNL Gene Name=LIPID TRANSFER PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=Ltp1%2C RLTP1;Oryzabase Gene Name Synonym(s)=non-specific lipid-transfer protein 1%2C type-1 lipid transfer protein%2C lipid transfer protein%2C Non-specific lipid-transfer protein 2;Note=Similar to Non-specific lipid-transfer protein 2.;Transcript_evidence=AK058896 (DDBJ%2C Best hit);ORF_evidence=A2ZAT0 (UniProt);GO=Biological Process: lipid transport (GO:0006869),Molecular Function: lipid binding (GO:0008289);InterPro=Plant lipid transfer protein/Par allergen (IPR000528),Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=001-007-G08;Oryzabase=13557;Expression=AK058896;TENOR=Os11t0115350-01;KEGG=Os11t0115350-01
Chr11	irgsp1_rep	five_prime_UTR	693326	693418	.	+	.	Parent=Os11t0115350-01
Chr11	irgsp1_rep	CDS	693419	693765	.	+	0	Parent=Os11t0115350-01
Chr11	irgsp1_rep	CDS	693855	693864	.	+	1	Parent=Os11t0115350-01
Chr11	irgsp1_rep	three_prime_UTR	693865	694254	.	+	.	Parent=Os11t0115350-01
Chr11	irgsp1_rep	mRNA	703095	703443	.	-	.	ID=Os11t0115375-00;Name=Os11t0115375-00;Locus_id=Os11g0115375;Note=Hypothetical protein.;Transcript_evidence=EU975148 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0115375-00
Chr11	irgsp1_rep	CDS	703096	703443	.	-	0	Parent=Os11t0115375-00
Chr11	irgsp1_rep	three_prime_UTR	703095	703095	.	-	.	Parent=Os11t0115375-00
Chr11	irgsp1_rep	mRNA	703038	703928	.	+	.	ID=Os11t0115400-00;Name=Os11t0115400-00;Locus_id=Os11g0115400;Note=Lipid transfer protein LPT IV.;Transcript_evidence=CT841607 (DDBJ%2C Best hit);ORF_evidence=Q2RBD2 (UniProt);GO=Biological Process: lipid transport (GO:0006869),Molecular Function: lipid binding (GO:0008289);InterPro=Plant lipid transfer protein/Par allergen (IPR000528),Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);TENOR=Os11t0115400-00;KEGG=Os11t0115400-00
Chr11	irgsp1_rep	five_prime_UTR	703038	703101	.	+	.	Parent=Os11t0115400-00
Chr11	irgsp1_rep	CDS	703102	703442	.	+	0	Parent=Os11t0115400-00
Chr11	irgsp1_rep	CDS	703557	703566	.	+	1	Parent=Os11t0115400-00
Chr11	irgsp1_rep	three_prime_UTR	703567	703928	.	+	.	Parent=Os11t0115400-00
Chr11	irgsp1_rep	mRNA	705968	708769	.	+	.	ID=Os11t0115800-01;Name=Os11t0115800-01;Locus_id=Os11g0115800;Note=Conserved hypothetical protein.;Transcript_evidence=AK106102 (DDBJ%2C Best hit);ORF_evidence=B8B8N1 (UniProt);NIAS_FLcDNA=001-207-C07;TENOR=Os11t0115800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	705968	706296	.	+	.	Parent=Os11t0115800-01
Chr11	irgsp1_rep	CDS	706297	706515	.	+	0	Parent=Os11t0115800-01
Chr11	irgsp1_rep	three_prime_UTR	706516	706662	.	+	.	Parent=Os11t0115800-01
Chr11	irgsp1_rep	three_prime_UTR	707886	707967	.	+	.	Parent=Os11t0115800-01
Chr11	irgsp1_rep	three_prime_UTR	708491	708769	.	+	.	Parent=Os11t0115800-01
Chr11	irgsp1_rep	mRNA	715445	716478	.	+	.	ID=Os11t0116000-01;Name=Os11t0116000-01;Locus_id=Os11g0116000;Oryzabase Gene Symbol Synonym(s)=OsLTP1.12%2C OsLtpI.12;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein 1.12%2C lipid transfer protein 1.12%2C type 1 non-specific lipid transfer protein 12;Note=Similar to Nonspecific lipid-transfer protein 1 (LTP 1) (Major allergen Pru d 3).;Transcript_evidence=AK061182 (DDBJ%2C Best hit),AK059714 (DDBJ%2C Best hit),AK073363 (DDBJ%2C Best hit);ORF_evidence=A2ZAT2 (UniProt);GO=Biological Process: lipid transport (GO:0006869),Molecular Function: lipid binding (GO:0008289);InterPro=Plant lipid transfer protein/Par allergen (IPR000528),Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=006-209-D09,001-032-F09,J033030A16;Oryzabase=13521;TENOR=Os11t0116000-01
Chr11	irgsp1_rep	five_prime_UTR	715445	715531	.	+	.	Parent=Os11t0116000-01
Chr11	irgsp1_rep	CDS	715532	715878	.	+	0	Parent=Os11t0116000-01
Chr11	irgsp1_rep	CDS	715985	715994	.	+	1	Parent=Os11t0116000-01
Chr11	irgsp1_rep	three_prime_UTR	715995	716478	.	+	.	Parent=Os11t0116000-01
Chr11	irgsp1_rep	mRNA	716148	716262	.	+	.	ID=Os11t0116000-02;Name=Os11t0116000-02;Locus_id=Os11g0116000;Oryzabase Gene Symbol Synonym(s)=OsLTP1.12%2C OsLtpI.12;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein 1.12%2C lipid transfer protein 1.12%2C type 1 non-specific lipid transfer protein 12;Note=Non-protein coding transcript.;Transcript_evidence=AK060726 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-031-H01;Oryzabase=13521;TENOR=Os11t0116000-02
Chr11	irgsp1_rep	exon	716148	716262	.	+	.	Parent=Os11t0116000-02
Chr11	irgsp1_rep	mRNA	722933	724377	.	+	.	ID=Os11t0116200-01;Name=Os11t0116200-01;Locus_id=Os11g0116200;Oryzabase Gene Symbol Synonym(s)=OsLTP1.13%2C OsLtpI.13;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein 1.13%2C lipid transfer protein 1.13%2C type 1 non-specific lipid transfer protein 13;Note=Similar to nonspecific lipid-transfer protein 3.;Transcript_evidence=AK064888 (DDBJ%2C Best hit);ORF_evidence=Q2QYK8 (UniProt);GO=Biological Process: lipid transport (GO:0006869),Molecular Function: lipid binding (GO:0008289);InterPro=Plant lipid transfer protein/Par allergen (IPR000528),Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=J013000K13;Oryzabase=13522;Expression=AK064888;TENOR=Os11t0116200-01;KEGG=Os11t0116200-01
Chr11	irgsp1_rep	five_prime_UTR	722933	723061	.	+	.	Parent=Os11t0116200-01
Chr11	irgsp1_rep	CDS	723062	723408	.	+	0	Parent=Os11t0116200-01
Chr11	irgsp1_rep	CDS	724118	724127	.	+	1	Parent=Os11t0116200-01
Chr11	irgsp1_rep	three_prime_UTR	724128	724377	.	+	.	Parent=Os11t0116200-01
Chr11	irgsp1_rep	mRNA	722980	726970	.	+	.	ID=Os11t0116200-02;Name=Os11t0116200-02;Locus_id=Os11g0116200;Oryzabase Gene Symbol Synonym(s)=OsLTP1.13%2C OsLtpI.13;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein 1.13%2C lipid transfer protein 1.13%2C type 1 non-specific lipid transfer protein 13;Note=Similar to Zinc finger%2C C3HC4 type family protein%2C expressed.;Transcript_evidence=AK060108 (DDBJ%2C Best hit);ORF_evidence=Q2QYK7 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=006-308-C09;Oryzabase=13522;TENOR=Os11t0116200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	722980	723219	.	+	.	Parent=Os11t0116200-02
Chr11	irgsp1_rep	CDS	723220	723408	.	+	0	Parent=Os11t0116200-02
Chr11	irgsp1_rep	CDS	726204	726716	.	+	0	Parent=Os11t0116200-02
Chr11	irgsp1_rep	three_prime_UTR	726717	726970	.	+	.	Parent=Os11t0116200-02
Chr11	irgsp1_rep	mRNA	729514	732755	.	-	.	ID=Os11t0116300-01;Name=Os11t0116300-01;Locus_id=Os11g0116300;Oryzabase Gene Symbol Synonym(s)=CHI;Oryzabase Gene Name Synonym(s)=chalcone isomerase;Note=Chalcone isomerase domain containing protein.;Transcript_evidence=AK059463 (DDBJ%2C Best hit);ORF_evidence=NP_001150388.1 (RefSeq);GO=Biological Process: flavonoid biosynthetic process (GO:0009813),Biological Process: cellular modified amino acid biosynthetic process (GO:0042398),Molecular Function: intramolecular lyase activity (GO:0016872),Molecular Function: chalcone isomerase activity (GO:0045430);InterPro=Chalcone isomerase%2C subgroup (IPR003466),Chalcone isomerase (IPR016087),Chalcone isomerase%2C 3-layer sandwich (IPR016088);NIAS_FLcDNA=001-028-D03;Oryzabase=16782;Expression=AK059463;TENOR=Os11t0116300-01;KEGG=Os11t0116300-01
Chr11	irgsp1_rep	five_prime_UTR	732634	732755	.	-	.	Parent=Os11t0116300-01
Chr11	irgsp1_rep	CDS	732633	732633	.	-	0	Parent=Os11t0116300-01
Chr11	irgsp1_rep	CDS	730682	730771	.	-	2	Parent=Os11t0116300-01
Chr11	irgsp1_rep	CDS	730426	730584	.	-	2	Parent=Os11t0116300-01
Chr11	irgsp1_rep	CDS	729914	730140	.	-	2	Parent=Os11t0116300-01
Chr11	irgsp1_rep	CDS	729643	729804	.	-	0	Parent=Os11t0116300-01
Chr11	irgsp1_rep	three_prime_UTR	729514	729642	.	-	.	Parent=Os11t0116300-01
Chr11	irgsp1_rep	mRNA	734252	737187	.	+	.	ID=Os11t0116400-01;Name=Os11t0116400-01;Locus_id=Os11g0116400;Note=Similar to Elongation factor P (EF-P).;Transcript_evidence=AK059833 (DDBJ%2C Best hit);ORF_evidence=B6UC94 (UniProt);GO=Biological Process: translational elongation (GO:0006414),Biological Process: peptide biosynthetic process (GO:0043043),Cellular Component: cytoplasm (GO:0005737),Molecular Function: translation elongation factor activity (GO:0003746);InterPro=Translation elongation factor P/YeiP%2C central (IPR001059),Translation protein SH3-like (IPR008991),Translation elongation factor P (IPR011768),Nucleic acid-binding%2C OB-fold (IPR012340),Translation elongation factor%2C KOW-like (IPR013185),Translation elongation factor P/YeiP%2C conserved site (IPR013852),Translation protein SH3-like%2C subgroup (IPR014722),Elongation factor P%2C C-terminal (IPR015365),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=006-206-B05;Expression=AK059833;TENOR=Os11t0116400-01;KEGG=Os11t0116400-01
Chr11	irgsp1_rep	five_prime_UTR	734252	734297	.	+	.	Parent=Os11t0116400-01
Chr11	irgsp1_rep	CDS	734298	734424	.	+	0	Parent=Os11t0116400-01
Chr11	irgsp1_rep	CDS	734532	734609	.	+	2	Parent=Os11t0116400-01
Chr11	irgsp1_rep	CDS	735397	735503	.	+	2	Parent=Os11t0116400-01
Chr11	irgsp1_rep	CDS	735933	736010	.	+	0	Parent=Os11t0116400-01
Chr11	irgsp1_rep	CDS	736406	736507	.	+	0	Parent=Os11t0116400-01
Chr11	irgsp1_rep	CDS	736682	736760	.	+	0	Parent=Os11t0116400-01
Chr11	irgsp1_rep	CDS	736859	736977	.	+	2	Parent=Os11t0116400-01
Chr11	irgsp1_rep	three_prime_UTR	736978	737187	.	+	.	Parent=Os11t0116400-01
Chr11	irgsp1_rep	mRNA	739296	742791	.	-	.	ID=Os11t0116500-01;Name=Os11t0116500-01;Locus_id=Os11g0116500;Note=Similar to Chloroplastic outer envelope membrane protein (OEP75) precursor (Outer membrane protein).;Transcript_evidence=AK070010 (DDBJ%2C Best hit);ORF_evidence=Q84Q83 (UniProt);GO=Cellular Component: outer membrane (GO:0019867);InterPro=Bacterial surface antigen (D15) (IPR000184),Surface antigen variable number (IPR010827);NIAS_FLcDNA=J023038G17;Expression=AK070010;TENOR=Os11t0116500-01;KEGG=Os11t0116500-01
Chr11	irgsp1_rep	five_prime_UTR	742720	742791	.	-	.	Parent=Os11t0116500-01
Chr11	irgsp1_rep	CDS	742316	742719	.	-	0	Parent=Os11t0116500-01
Chr11	irgsp1_rep	CDS	741805	742102	.	-	1	Parent=Os11t0116500-01
Chr11	irgsp1_rep	CDS	741183	741404	.	-	0	Parent=Os11t0116500-01
Chr11	irgsp1_rep	CDS	740952	741059	.	-	0	Parent=Os11t0116500-01
Chr11	irgsp1_rep	CDS	740648	740842	.	-	0	Parent=Os11t0116500-01
Chr11	irgsp1_rep	CDS	740305	740553	.	-	0	Parent=Os11t0116500-01
Chr11	irgsp1_rep	CDS	739722	739976	.	-	0	Parent=Os11t0116500-01
Chr11	irgsp1_rep	CDS	739304	739555	.	-	0	Parent=Os11t0116500-01
Chr11	irgsp1_rep	three_prime_UTR	739296	739303	.	-	.	Parent=Os11t0116500-01
Chr11	irgsp1_rep	mRNA	742870	747723	.	-	.	ID=Os11t0116550-01;Name=Os11t0116550-01;Locus_id=Os11g0116550;Note=Similar to predicted protein.;Transcript_evidence=AK242721 (DDBJ%2C Best hit);ORF_evidence=Q2PYW3 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Protease-associated domain%2C PA (IPR003137),EGF-like calcium-binding%2C conserved site (IPR018097);NIAS_FLcDNA=J090045E07;TENOR=Os11t0116550-01;KEGG=Os11t0116550-01
Chr11	irgsp1_rep	five_prime_UTR	747440	747723	.	-	.	Parent=Os11t0116550-01
Chr11	irgsp1_rep	CDS	747127	747439	.	-	0	Parent=Os11t0116550-01
Chr11	irgsp1_rep	CDS	745965	746654	.	-	2	Parent=Os11t0116550-01
Chr11	irgsp1_rep	CDS	745796	745884	.	-	2	Parent=Os11t0116550-01
Chr11	irgsp1_rep	CDS	745649	745718	.	-	0	Parent=Os11t0116550-01
Chr11	irgsp1_rep	CDS	745477	745560	.	-	2	Parent=Os11t0116550-01
Chr11	irgsp1_rep	CDS	745274	745350	.	-	2	Parent=Os11t0116550-01
Chr11	irgsp1_rep	CDS	745115	745196	.	-	0	Parent=Os11t0116550-01
Chr11	irgsp1_rep	CDS	744166	744248	.	-	2	Parent=Os11t0116550-01
Chr11	irgsp1_rep	CDS	744027	744084	.	-	0	Parent=Os11t0116550-01
Chr11	irgsp1_rep	CDS	743755	743883	.	-	2	Parent=Os11t0116550-01
Chr11	irgsp1_rep	CDS	743423	743529	.	-	2	Parent=Os11t0116550-01
Chr11	irgsp1_rep	CDS	743223	743321	.	-	0	Parent=Os11t0116550-01
Chr11	irgsp1_rep	three_prime_UTR	742870	743222	.	-	.	Parent=Os11t0116550-01
Chr11	irgsp1_rep	mRNA	750013	750897	.	-	.	ID=Os11t0116600-00;Name=Os11t0116600-00;Locus_id=Os11g0116600;CGSNL Gene Symbol=WRKY52;CGSNL Gene Name=WRKY GENE 52;Oryzabase Gene Symbol Synonym(s)=OsWRKY52;Oryzabase Gene Name Synonym(s)=Rice WRKY gene52;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2RBC4 (UniProt);Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6566;TENOR=Os11t0116600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	750849	750897	.	-	0	Parent=Os11t0116600-00
Chr11	irgsp1_rep	CDS	750630	750749	.	-	2	Parent=Os11t0116600-00
Chr11	irgsp1_rep	CDS	750013	750377	.	-	2	Parent=Os11t0116600-00
Chr11	irgsp1_rep	mRNA	759592	763326	.	-	.	ID=Os11t0116900-01;Name=Os11t0116900-01;Locus_id=Os11g0116900;CGSNL Gene Symbol=WRKY46;CGSNL Gene Name=WRKY GENE 46;Oryzabase Gene Symbol Synonym(s)=OsWRKY46%2C WRKY91%2C OsWRKY91;Oryzabase Gene Name Synonym(s)=WRKY GENE 91;Note=Similar to WRKY DNA binding domain containing protein%2C expressed.;Transcript_evidence=AK073243 (DDBJ%2C Best hit);ORF_evidence=Q2QYK0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);NIAS_FLcDNA=J033005D11;Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6560;TENOR=Os11t0116900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	763244	763326	.	-	.	Parent=Os11t0116900-01
Chr11	irgsp1_rep	CDS	763164	763243	.	-	0	Parent=Os11t0116900-01
Chr11	irgsp1_rep	CDS	762913	763023	.	-	1	Parent=Os11t0116900-01
Chr11	irgsp1_rep	CDS	759895	760378	.	-	1	Parent=Os11t0116900-01
Chr11	irgsp1_rep	three_prime_UTR	759592	759894	.	-	.	Parent=Os11t0116900-01
Chr11	irgsp1_rep	mRNA	778581	778972	.	+	.	ID=Os11t0117300-00;Name=Os11t0117300-00;Locus_id=Os11g0117300;Note=Conserved hypothetical protein.;Transcript_evidence=EU951221 (DDBJ);ORF_evidence=A2ZAU2 (UniProt);TENOR=Os11t0117300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	778581	778762	.	+	.	Parent=Os11t0117300-00
Chr11	irgsp1_rep	CDS	778763	778972	.	+	0	Parent=Os11t0117300-00
Chr11	irgsp1_rep	mRNA	782471	783485	.	-	.	ID=Os11t0117400-00;Name=Os11t0117400-00;Locus_id=Os11g0117400;CGSNL Gene Symbol=WRKY104;CGSNL Gene Name=WRKY GENE 104;Oryzabase Gene Symbol Synonym(s)=OsWRKY104;Note=Similar to WRKY DNA binding domain containing protein%2C expressed.;Transcript_evidence=AY781112 (DDBJ%2C Best hit);ORF_evidence=Q2RBB9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=8962;TENOR=Os11t0117400-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	783485	783485	.	-	.	Parent=Os11t0117400-00
Chr11	irgsp1_rep	CDS	783195	783484	.	-	0	Parent=Os11t0117400-00
Chr11	irgsp1_rep	CDS	782994	783101	.	-	1	Parent=Os11t0117400-00
Chr11	irgsp1_rep	CDS	782471	782888	.	-	1	Parent=Os11t0117400-00
Chr11	irgsp1_rep	mRNA	783309	783620	.	+	.	ID=Os11t0117450-00;Name=Os11t0117450-00;Locus_id=Os11g0117450;Note=Non-protein coding transcript.;Transcript_evidence=EU947018 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0117450-00
Chr11	irgsp1_rep	exon	783309	783620	.	+	.	Parent=Os11t0117450-00
Chr11	irgsp1_rep	mRNA	787544	789030	.	-	.	ID=Os11t0117500-01;Name=Os11t0117500-01;Locus_id=Os11g0117500;CGSNL Gene Symbol=WRKY40;CGSNL Gene Name=WRKY GENE 40;Oryzabase Gene Symbol Synonym(s)=OsWRKY40;Oryzabase Gene Name Synonym(s)=Rice WRKY gene40;Note=DNA-binding WRKY domain containing protein.;Transcript_evidence=AK289175 (DDBJ%2C Best hit);ORF_evidence=Q20DP7 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);NIAS_FLcDNA=J100021A14;Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6554;TENOR=Os11t0117500-01;KEGG=Os11t0117500-01
Chr11	irgsp1_rep	five_prime_UTR	788865	789030	.	-	.	Parent=Os11t0117500-01
Chr11	irgsp1_rep	CDS	788476	788864	.	-	0	Parent=Os11t0117500-01
Chr11	irgsp1_rep	CDS	788229	788333	.	-	1	Parent=Os11t0117500-01
Chr11	irgsp1_rep	CDS	787623	788091	.	-	1	Parent=Os11t0117500-01
Chr11	irgsp1_rep	three_prime_UTR	787544	787622	.	-	.	Parent=Os11t0117500-01
Chr11	irgsp1_rep	mRNA	794803	795540	.	-	.	ID=Os11t0117600-00;Name=Os11t0117600-00;Locus_id=Os11g0117600;CGSNL Gene Symbol=WRKY50;CGSNL Gene Name=WRKY GENE 50;Oryzabase Gene Symbol Synonym(s)=OsWRKY50;Oryzabase Gene Name Synonym(s)=Rice WRKY gene50;Note=Similar to WRKY transcription factor 50 (Fragment).;Transcript_evidence=ab initio prediction;ORF_evidence=Q6IEN0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6565;TENOR=Os11t0117600-00
Chr11	irgsp1_rep	CDS	795206	795540	.	-	0	Parent=Os11t0117600-00
Chr11	irgsp1_rep	CDS	794905	795018	.	-	1	Parent=Os11t0117600-00
Chr11	irgsp1_rep	CDS	794803	794818	.	-	1	Parent=Os11t0117600-00
Chr11	irgsp1_rep	mRNA	801632	805506	.	-	.	ID=Os11t0117700-01;Name=Os11t0117700-01;Locus_id=Os11g0117700;Note=Protein of unknown function DUF3133 domain containing protein.;Transcript_evidence=AK065507 (DDBJ%2C Best hit);ORF_evidence=B9GBJ0 (UniProt);InterPro=Protein of unknown function DUF3133 (IPR021480);NIAS_FLcDNA=J013028J07;TENOR=Os11t0117700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	805321	805506	.	-	.	Parent=Os11t0117700-01
Chr11	irgsp1_rep	five_prime_UTR	804878	805006	.	-	.	Parent=Os11t0117700-01
Chr11	irgsp1_rep	CDS	804727	804877	.	-	0	Parent=Os11t0117700-01
Chr11	irgsp1_rep	CDS	802148	804633	.	-	2	Parent=Os11t0117700-01
Chr11	irgsp1_rep	three_prime_UTR	801632	802147	.	-	.	Parent=Os11t0117700-01
Chr11	irgsp1_rep	mRNA	812243	813507	.	+	.	ID=Os11t0117900-01;Name=Os11t0117900-01;Locus_id=Os11g0117900;Note=Similar to Hydrolase%2C alpha/beta fold family protein%2C expressed.;Transcript_evidence=AK241356 (DDBJ%2C Best hit);ORF_evidence=Q2RBB4 (UniProt);NIAS_FLcDNA=J065150M11;TENOR=Os11t0117900-01;KEGG=Os11t0117900-01
Chr11	irgsp1_rep	five_prime_UTR	812243	812244	.	+	.	Parent=Os11t0117900-01
Chr11	irgsp1_rep	CDS	812245	812496	.	+	0	Parent=Os11t0117900-01
Chr11	irgsp1_rep	CDS	812623	812763	.	+	0	Parent=Os11t0117900-01
Chr11	irgsp1_rep	CDS	812849	812983	.	+	0	Parent=Os11t0117900-01
Chr11	irgsp1_rep	CDS	813061	813333	.	+	0	Parent=Os11t0117900-01
Chr11	irgsp1_rep	three_prime_UTR	813334	813507	.	+	.	Parent=Os11t0117900-01
Chr11	irgsp1_rep	mRNA	813846	815795	.	+	.	ID=Os11t0118000-01;Name=Os11t0118000-01;Locus_id=Os11g0118000;Note=Alpha/beta hydrolase fold-1 domain containing protein.;Transcript_evidence=AK100743 (DDBJ%2C Best hit);ORF_evidence=NP_001152091.1 (RefSeq);NIAS_FLcDNA=J023118F07;Expression=AK100743;TENOR=Os11t0118000-01;KEGG=Os11t0118000-01
Chr11	irgsp1_rep	five_prime_UTR	813846	813951	.	+	.	Parent=Os11t0118000-01
Chr11	irgsp1_rep	CDS	813952	814176	.	+	0	Parent=Os11t0118000-01
Chr11	irgsp1_rep	CDS	814653	814793	.	+	0	Parent=Os11t0118000-01
Chr11	irgsp1_rep	CDS	814918	815046	.	+	0	Parent=Os11t0118000-01
Chr11	irgsp1_rep	CDS	815437	815700	.	+	0	Parent=Os11t0118000-01
Chr11	irgsp1_rep	three_prime_UTR	815701	815795	.	+	.	Parent=Os11t0118000-01
Chr11	irgsp1_rep	mRNA	821016	822953	.	-	.	ID=Os11t0118200-01;Name=Os11t0118200-01;Locus_id=Os11g0118200;Oryzabase Gene Name Synonym(s)=Mannan endo-1%2C 4-beta-mannosidase 7;Note=Similar to Mannan endo-1%2C4-beta-mannosidase 7.;Transcript_evidence=AK105536 (DDBJ%2C Best hit);ORF_evidence=Q2RBB1 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 5 (IPR001547),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 5%2C conserved site (IPR018087);NIAS_FLcDNA=001-127-H03;Oryzabase=21971;Expression=AK105536;TENOR=Os11t0118200-01;KEGG=Os11t0118200-01
Chr11	irgsp1_rep	five_prime_UTR	822828	822953	.	-	.	Parent=Os11t0118200-01
Chr11	irgsp1_rep	CDS	822567	822827	.	-	0	Parent=Os11t0118200-01
Chr11	irgsp1_rep	CDS	822198	822392	.	-	0	Parent=Os11t0118200-01
Chr11	irgsp1_rep	CDS	821927	822079	.	-	0	Parent=Os11t0118200-01
Chr11	irgsp1_rep	three_prime_UTR	821652	821926	.	-	.	Parent=Os11t0118200-01
Chr11	irgsp1_rep	three_prime_UTR	821016	821500	.	-	.	Parent=Os11t0118200-01
Chr11	irgsp1_rep	mRNA	823449	825737	.	-	.	ID=Os11t0118300-01;Name=Os11t0118300-01;Locus_id=Os11g0118300;Note=Similar to RPT2-like protein.;Transcript_evidence=AK064985 (DDBJ%2C Best hit),AK119514 (DDBJ%2C Best hit);ORF_evidence=B6ST41 (UniProt);GO=Biological Process: response to light stimulus (GO:0009416),Molecular Function: signal transducer activity (GO:0004871);InterPro=NPH3 (IPR004249),BTB/POZ fold (IPR011333);NIAS_FLcDNA=J013001C20,001-201-B11;TENOR=Os11t0118300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	825737	825737	.	-	.	Parent=Os11t0118300-01
Chr11	irgsp1_rep	CDS	825579	825736	.	-	0	Parent=Os11t0118300-01
Chr11	irgsp1_rep	CDS	825418	825487	.	-	1	Parent=Os11t0118300-01
Chr11	irgsp1_rep	CDS	823633	825258	.	-	0	Parent=Os11t0118300-01
Chr11	irgsp1_rep	three_prime_UTR	823449	823632	.	-	.	Parent=Os11t0118300-01
Chr11	irgsp1_rep	mRNA	823619	825272	.	+	.	ID=Os11t0118350-00;Name=Os11t0118350-00;Locus_id=Os11g0118350;Note=Hypothetical gene.;Transcript_evidence=AK109861 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;Expression=AK109861;TENOR=Os11t0118350-00;KEGG=Os11t0118350-00
Chr11	irgsp1_rep	five_prime_UTR	823619	824152	.	+	.	Parent=Os11t0118350-00
Chr11	irgsp1_rep	CDS	824153	824674	.	+	0	Parent=Os11t0118350-00
Chr11	irgsp1_rep	three_prime_UTR	824675	825272	.	+	.	Parent=Os11t0118350-00
Chr11	irgsp1_rep	mRNA	827020	828420	.	+	.	ID=Os11t0118400-01;Name=Os11t0118400-01;Locus_id=Os11g0118400;Note=Hypothetical protein.;Transcript_evidence=AK067579 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013113F10;Expression=AK067579;TENOR=Os11t0118400-01;KEGG=Os11t0118400-01
Chr11	irgsp1_rep	five_prime_UTR	827020	827688	.	+	.	Parent=Os11t0118400-01
Chr11	irgsp1_rep	CDS	827689	828114	.	+	0	Parent=Os11t0118400-01
Chr11	irgsp1_rep	three_prime_UTR	828115	828420	.	+	.	Parent=Os11t0118400-01
Chr11	irgsp1_rep	mRNA	827666	831777	.	-	.	ID=Os11t0118500-00;Name=Os11t0118500-00;Locus_id=Os11g0118500;Note=Similar to protein binding / signal transducer.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_187469.4 (RefSeq);GO=Biological Process: response to light stimulus (GO:0009416),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),NPH3 (IPR004249),BTB/POZ fold (IPR011333);TENOR=Os11t0118500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	831686	831777	.	-	0	Parent=Os11t0118500-00
Chr11	irgsp1_rep	CDS	830419	830485	.	-	1	Parent=Os11t0118500-00
Chr11	irgsp1_rep	CDS	828549	829697	.	-	0	Parent=Os11t0118500-00
Chr11	irgsp1_rep	CDS	827666	828289	.	-	0	Parent=Os11t0118500-00
Chr11	irgsp1_rep	mRNA	837812	839841	.	-	.	ID=Os11t0118600-01;Name=Os11t0118600-01;Locus_id=Os11g0118600;Note=Protein of unknown function DUF1191 family protein.;Transcript_evidence=AK121697 (DDBJ%2C Best hit),AK108947 (DDBJ%2C Best hit);ORF_evidence=NP_001066004.2 (RefSeq);InterPro=Protein of unknown function DUF1191 (IPR010605);NIAS_FLcDNA=J033072G17,002-153-C01;Expression=AK121697;TENOR=Os11t0118600-01;KEGG=Os11t0118600-01
Chr11	irgsp1_rep	five_prime_UTR	839248	839841	.	-	.	Parent=Os11t0118600-01
Chr11	irgsp1_rep	CDS	838309	839247	.	-	0	Parent=Os11t0118600-01
Chr11	irgsp1_rep	three_prime_UTR	837812	838308	.	-	.	Parent=Os11t0118600-01
Chr11	irgsp1_rep	mRNA	845215	848343	.	-	.	ID=Os11t0118800-01;Name=Os11t0118800-01;Locus_id=Os11g0118800;Note=Similar to Expressed protein-like protein.;Transcript_evidence=AK120973 (DDBJ%2C Best hit);ORF_evidence=B8BIS1 (UniProt);NIAS_FLcDNA=J023041H23;Expression=AK120973;TENOR=Os11t0118800-01;KEGG=Os11t0118800-01
Chr11	irgsp1_rep	five_prime_UTR	848269	848343	.	-	.	Parent=Os11t0118800-01
Chr11	irgsp1_rep	CDS	848196	848268	.	-	0	Parent=Os11t0118800-01
Chr11	irgsp1_rep	CDS	847427	847608	.	-	2	Parent=Os11t0118800-01
Chr11	irgsp1_rep	CDS	847195	847320	.	-	0	Parent=Os11t0118800-01
Chr11	irgsp1_rep	CDS	846812	847006	.	-	0	Parent=Os11t0118800-01
Chr11	irgsp1_rep	CDS	846390	846557	.	-	0	Parent=Os11t0118800-01
Chr11	irgsp1_rep	CDS	845566	845940	.	-	0	Parent=Os11t0118800-01
Chr11	irgsp1_rep	three_prime_UTR	845215	845565	.	-	.	Parent=Os11t0118800-01
Chr11	irgsp1_rep	mRNA	845292	848295	.	+	.	ID=Os11t0118875-00;Name=Os11t0118875-00;Locus_id=Os11g0118875;Note=Hypothetical protein.;Transcript_evidence=tplb0051b16 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0118875-00
Chr11	irgsp1_rep	five_prime_UTR	845292	845467	.	+	.	Parent=Os11t0118875-00
Chr11	irgsp1_rep	CDS	845468	845719	.	+	0	Parent=Os11t0118875-00
Chr11	irgsp1_rep	three_prime_UTR	845720	845942	.	+	.	Parent=Os11t0118875-00
Chr11	irgsp1_rep	three_prime_UTR	846393	846555	.	+	.	Parent=Os11t0118875-00
Chr11	irgsp1_rep	three_prime_UTR	846805	846999	.	+	.	Parent=Os11t0118875-00
Chr11	irgsp1_rep	three_prime_UTR	847187	847316	.	+	.	Parent=Os11t0118875-00
Chr11	irgsp1_rep	three_prime_UTR	847423	847614	.	+	.	Parent=Os11t0118875-00
Chr11	irgsp1_rep	three_prime_UTR	848206	848295	.	+	.	Parent=Os11t0118875-00
Chr11	irgsp1_rep	mRNA	850226	851215	.	+	.	ID=Os11t0118950-00;Name=Os11t0118950-00;Locus_id=Os11g0118950;Note=Hypothetical protein.;Transcript_evidence=tplb0043c01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0118950-00
Chr11	irgsp1_rep	five_prime_UTR	850226	850226	.	+	.	Parent=Os11t0118950-00
Chr11	irgsp1_rep	CDS	850227	850337	.	+	0	Parent=Os11t0118950-00
Chr11	irgsp1_rep	CDS	850440	850760	.	+	0	Parent=Os11t0118950-00
Chr11	irgsp1_rep	three_prime_UTR	850761	851215	.	+	.	Parent=Os11t0118950-00
Chr11	irgsp1_rep	mRNA	851565	855058	.	+	.	ID=Os11t0119100-01;Name=Os11t0119100-01;Locus_id=Os11g0119100;Note=Similar to Catalytic/ hydrolase.;Transcript_evidence=AK111574 (DDBJ%2C Best hit);ORF_evidence=B4FMK4 (UniProt);NIAS_FLcDNA=J013074D22;TENOR=Os11t0119100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	851565	851834	.	+	.	Parent=Os11t0119100-01
Chr11	irgsp1_rep	five_prime_UTR	852465	852575	.	+	.	Parent=Os11t0119100-01
Chr11	irgsp1_rep	CDS	852576	852720	.	+	0	Parent=Os11t0119100-01
Chr11	irgsp1_rep	CDS	852947	853302	.	+	2	Parent=Os11t0119100-01
Chr11	irgsp1_rep	three_prime_UTR	853303	853409	.	+	.	Parent=Os11t0119100-01
Chr11	irgsp1_rep	three_prime_UTR	853506	853848	.	+	.	Parent=Os11t0119100-01
Chr11	irgsp1_rep	three_prime_UTR	854068	854166	.	+	.	Parent=Os11t0119100-01
Chr11	irgsp1_rep	three_prime_UTR	854240	854360	.	+	.	Parent=Os11t0119100-01
Chr11	irgsp1_rep	three_prime_UTR	854567	855058	.	+	.	Parent=Os11t0119100-01
Chr11	irgsp1_rep	mRNA	856524	860980	.	+	.	ID=Os11t0119200-01;Name=Os11t0119200-01;Locus_id=Os11g0119200;CGSNL Gene Symbol=CYP714C3;CGSNL Gene Name=P-450 714C3;Oryzabase Gene Symbol Synonym(s)=CYP714C3;Oryzabase Gene Name Synonym(s)=CytoChrome P450 714C3;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK103124 (DDBJ%2C Best hit);ORF_evidence=NP_001148976.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J033119L05;Oryzabase=12267;Expression=AK103124;TENOR=Os11t0119200-01;KEGG=Os11t0119200-01
Chr11	irgsp1_rep	five_prime_UTR	856524	856729	.	+	.	Parent=Os11t0119200-01
Chr11	irgsp1_rep	five_prime_UTR	856866	856921	.	+	.	Parent=Os11t0119200-01
Chr11	irgsp1_rep	CDS	856922	858397	.	+	0	Parent=Os11t0119200-01
Chr11	irgsp1_rep	three_prime_UTR	858398	859458	.	+	.	Parent=Os11t0119200-01
Chr11	irgsp1_rep	three_prime_UTR	860379	860605	.	+	.	Parent=Os11t0119200-01
Chr11	irgsp1_rep	three_prime_UTR	860701	860980	.	+	.	Parent=Os11t0119200-01
Chr11	irgsp1_rep	mRNA	859240	862146	.	-	.	ID=Os11t0119311-00;Name=Os11t0119311-00;Locus_id=Os11g0119311;Note=Hypothetical protein.;Transcript_evidence=tplb0053a11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0119311-00
Chr11	irgsp1_rep	five_prime_UTR	861994	862146	.	-	.	Parent=Os11t0119311-00
Chr11	irgsp1_rep	CDS	861673	861993	.	-	0	Parent=Os11t0119311-00
Chr11	irgsp1_rep	three_prime_UTR	861658	861672	.	-	.	Parent=Os11t0119311-00
Chr11	irgsp1_rep	three_prime_UTR	861332	861538	.	-	.	Parent=Os11t0119311-00
Chr11	irgsp1_rep	three_prime_UTR	860730	861024	.	-	.	Parent=Os11t0119311-00
Chr11	irgsp1_rep	three_prime_UTR	860401	860625	.	-	.	Parent=Os11t0119311-00
Chr11	irgsp1_rep	three_prime_UTR	859240	859483	.	-	.	Parent=Os11t0119311-00
Chr11	irgsp1_rep	mRNA	870084	879265	.	+	.	ID=Os11t0119700-00;Name=Os11t0119700-00;Locus_id=Os11g0119700;Note=Hypothetical conserved gene.;Transcript_evidence=AK066943 (DDBJ%2C Secondary hit);ORF_evidence=XP_002319441.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);Expression=AK066943;TENOR=Os11t0119700-00;KEGG=Os11t0119700-00
Chr11	irgsp1_rep	five_prime_UTR	870084	870182	.	+	.	Parent=Os11t0119700-00
Chr11	irgsp1_rep	five_prime_UTR	870631	870791	.	+	.	Parent=Os11t0119700-00
Chr11	irgsp1_rep	five_prime_UTR	870798	870830	.	+	.	Parent=Os11t0119700-00
Chr11	irgsp1_rep	CDS	870831	871137	.	+	0	Parent=Os11t0119700-00
Chr11	irgsp1_rep	CDS	877054	877280	.	+	2	Parent=Os11t0119700-00
Chr11	irgsp1_rep	CDS	877416	877565	.	+	0	Parent=Os11t0119700-00
Chr11	irgsp1_rep	three_prime_UTR	877566	877663	.	+	.	Parent=Os11t0119700-00
Chr11	irgsp1_rep	three_prime_UTR	878192	878555	.	+	.	Parent=Os11t0119700-00
Chr11	irgsp1_rep	three_prime_UTR	878657	879265	.	+	.	Parent=Os11t0119700-00
Chr11	irgsp1_rep	mRNA	870844	879114	.	-	.	ID=Os11t0119800-00;Name=Os11t0119800-00;Locus_id=Os11g0119800;Note=Hypothetical protein.;Transcript_evidence=tplb0053a11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0119800-00
Chr11	irgsp1_rep	five_prime_UTR	878655	879114	.	-	.	Parent=Os11t0119800-00
Chr11	irgsp1_rep	five_prime_UTR	878204	878553	.	-	.	Parent=Os11t0119800-00
Chr11	irgsp1_rep	five_prime_UTR	877598	877677	.	-	.	Parent=Os11t0119800-00
Chr11	irgsp1_rep	CDS	877414	877597	.	-	0	Parent=Os11t0119800-00
Chr11	irgsp1_rep	CDS	877163	877278	.	-	2	Parent=Os11t0119800-00
Chr11	irgsp1_rep	three_prime_UTR	877038	877162	.	-	.	Parent=Os11t0119800-00
Chr11	irgsp1_rep	three_prime_UTR	870844	871120	.	-	.	Parent=Os11t0119800-00
Chr11	irgsp1_rep	mRNA	883158	885904	.	+	.	ID=Os11t0119900-01;Name=Os11t0119900-01;Locus_id=Os11g0119900;Note=Conserved hypothetical protein.;Transcript_evidence=AK241076 (DDBJ%2C Best hit);ORF_evidence=Q2RB98 (UniProt);NIAS_FLcDNA=J065070G03;TENOR=Os11t0119900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	883158	883159	.	+	.	Parent=Os11t0119900-01
Chr11	irgsp1_rep	CDS	883160	883225	.	+	0	Parent=Os11t0119900-01
Chr11	irgsp1_rep	CDS	883444	883559	.	+	0	Parent=Os11t0119900-01
Chr11	irgsp1_rep	CDS	884793	885564	.	+	1	Parent=Os11t0119900-01
Chr11	irgsp1_rep	three_prime_UTR	885565	885904	.	+	.	Parent=Os11t0119900-01
Chr11	irgsp1_rep	mRNA	886242	887578	.	-	.	ID=Os11t0120100-01;Name=Os11t0120100-01;Locus_id=Os11g0120100;Note=Similar to Harpin-induced protein 1 containing protein%2C expressed.;Transcript_evidence=AK060359 (DDBJ%2C Best hit),AK101778 (DDBJ%2C Best hit);ORF_evidence=Q2RB97 (UniProt);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=001-008-H05,J033064O15;TENOR=Os11t0120100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	887416	887578	.	-	.	Parent=Os11t0120100-01
Chr11	irgsp1_rep	CDS	886708	887415	.	-	0	Parent=Os11t0120100-01
Chr11	irgsp1_rep	three_prime_UTR	886242	886707	.	-	.	Parent=Os11t0120100-01
Chr11	irgsp1_rep	mRNA	889336	892204	.	-	.	ID=Os11t0120200-01;Name=Os11t0120200-01;Locus_id=Os11g0120200;Note=Protein of unknown function DUF936%2C plant family protein.;Transcript_evidence=AK101734 (DDBJ%2C Best hit);ORF_evidence=NP_001066016.1 (RefSeq);InterPro=Protein of unknown function DUF936%2C plant (IPR010341);NIAS_FLcDNA=J033061H10;Expression=AK101734;TENOR=Os11t0120200-01;KEGG=Os11t0120200-01
Chr11	irgsp1_rep	five_prime_UTR	892140	892204	.	-	.	Parent=Os11t0120200-01
Chr11	irgsp1_rep	CDS	891042	892139	.	-	0	Parent=Os11t0120200-01
Chr11	irgsp1_rep	CDS	890445	890663	.	-	0	Parent=Os11t0120200-01
Chr11	irgsp1_rep	CDS	890266	890357	.	-	0	Parent=Os11t0120200-01
Chr11	irgsp1_rep	CDS	889463	890180	.	-	1	Parent=Os11t0120200-01
Chr11	irgsp1_rep	three_prime_UTR	889336	889462	.	-	.	Parent=Os11t0120200-01
Chr11	irgsp1_rep	mRNA	896134	897260	.	-	.	ID=Os11t0120300-01;Name=Os11t0120300-01;Locus_id=Os11g0120300;Note=Protein of unknown function DUF567 family protein.;Transcript_evidence=AK241497 (DDBJ%2C Best hit);ORF_evidence=NP_001149433.1 (RefSeq);GO=Biological Process: cellular metabolic process (GO:0044237);InterPro=Tubby%2C C-terminal (IPR000007),Initiation factor 2B-related (IPR000649),Protein of unknown function DUF567 (IPR007612);NIAS_FLcDNA=J065167I06;TENOR=Os11t0120300-01;KEGG=Os11t0120300-01
Chr11	irgsp1_rep	five_prime_UTR	897154	897260	.	-	.	Parent=Os11t0120300-01
Chr11	irgsp1_rep	CDS	896488	897153	.	-	0	Parent=Os11t0120300-01
Chr11	irgsp1_rep	three_prime_UTR	896134	896487	.	-	.	Parent=Os11t0120300-01
Chr11	irgsp1_rep	mRNA	905646	907829	.	+	.	ID=Os11t0120600-00;Name=Os11t0120600-00;Locus_id=Os11g0120600;Note=Similar to ATPase-like protein.;Transcript_evidence=CT828105 (DDBJ%2C Best hit);ORF_evidence=Q84YD8 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Histidine triad (HIT) protein (IPR001310),Histidine triad-like motif (IPR011146),Histidine triad motif (IPR011151),Histidine triad%2C conserved site (IPR019808);TENOR=Os11t0120600-00;KEGG=Os11t0120600-00 (EC:3.6.1.29)
Chr11	irgsp1_rep	five_prime_UTR	905646	905673	.	+	.	Parent=Os11t0120600-00
Chr11	irgsp1_rep	CDS	905674	905949	.	+	0	Parent=Os11t0120600-00
Chr11	irgsp1_rep	CDS	906944	907090	.	+	0	Parent=Os11t0120600-00
Chr11	irgsp1_rep	CDS	907380	907478	.	+	0	Parent=Os11t0120600-00
Chr11	irgsp1_rep	CDS	907570	907686	.	+	0	Parent=Os11t0120600-00
Chr11	irgsp1_rep	three_prime_UTR	907687	907829	.	+	.	Parent=Os11t0120600-00
Chr11	irgsp1_rep	mRNA	912470	914006	.	+	.	ID=Os11t0120725-00;Name=Os11t0120725-00;Locus_id=Os11g0120725;Note=Similar to ATPase-like protein.;Transcript_evidence=tplb0012m13 (Wheat FLcDNA);ORF_evidence=Q84YD8 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Histidine triad (HIT) protein (IPR001310),Histidine triad-like motif (IPR011146),Histidine triad motif (IPR011151),Histidine triad%2C conserved site (IPR019808);TENOR=Os11t0120725-00
Chr11	irgsp1_rep	five_prime_UTR	912470	912519	.	+	.	Parent=Os11t0120725-00
Chr11	irgsp1_rep	CDS	912520	912639	.	+	0	Parent=Os11t0120725-00
Chr11	irgsp1_rep	CDS	913290	913436	.	+	0	Parent=Os11t0120725-00
Chr11	irgsp1_rep	CDS	913695	913793	.	+	0	Parent=Os11t0120725-00
Chr11	irgsp1_rep	CDS	913876	913980	.	+	0	Parent=Os11t0120725-00
Chr11	irgsp1_rep	three_prime_UTR	913981	914006	.	+	.	Parent=Os11t0120725-00
Chr11	irgsp1_rep	mRNA	914815	917484	.	-	.	ID=Os11t0120850-01;Name=Os11t0120850-01;Locus_id=Os11g0120850;Note=Domain of unknown function DUF591 domain containing protein.;Transcript_evidence=AK288896 (DDBJ%2C Best hit);ORF_evidence=Q943Q8 (UniProt);InterPro=Domain of unknown function DUF591 (IPR007649);NIAS_FLcDNA=J090080F20;TENOR=Os11t0120850-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	916818	917484	.	-	.	Parent=Os11t0120850-01
Chr11	irgsp1_rep	CDS	916248	916817	.	-	0	Parent=Os11t0120850-01
Chr11	irgsp1_rep	three_prime_UTR	914815	916247	.	-	.	Parent=Os11t0120850-01
Chr11	irgsp1_rep	mRNA	931165	933160	.	-	.	ID=Os11t0121000-00;Name=Os11t0121000-00;Locus_id=Os11g0121000;Note=Hypothetical conserved gene.;Transcript_evidence=AK103389 (DDBJ%2C Secondary hit);ORF_evidence=B9G937 (UniProt);InterPro=Tubby%2C C-terminal (IPR000007),Protein of unknown function DUF567 (IPR007612);Expression=AK103389;TENOR=Os11t0121000-00;KEGG=Os11t0121000-00
Chr11	irgsp1_rep	five_prime_UTR	933096	933160	.	-	.	Parent=Os11t0121000-00
Chr11	irgsp1_rep	CDS	932832	933095	.	-	0	Parent=Os11t0121000-00
Chr11	irgsp1_rep	CDS	931357	931782	.	-	0	Parent=Os11t0121000-00
Chr11	irgsp1_rep	three_prime_UTR	931165	931356	.	-	.	Parent=Os11t0121000-00
Chr11	irgsp1_rep	mRNA	944561	945395	.	-	.	ID=Os11t0121300-01;Name=Os11t0121300-01;Locus_id=Os11g0121300;Note=Conserved hypothetical protein.;Transcript_evidence=AK240777 (DDBJ%2C Best hit);ORF_evidence=NP_001065611.1 (RefSeq);NIAS_FLcDNA=J053073I05;TENOR=Os11t0121300-01;KEGG=Os11t0121300-01
Chr11	irgsp1_rep	five_prime_UTR	945261	945395	.	-	.	Parent=Os11t0121300-01
Chr11	irgsp1_rep	CDS	945167	945260	.	-	0	Parent=Os11t0121300-01
Chr11	irgsp1_rep	CDS	944795	945069	.	-	2	Parent=Os11t0121300-01
Chr11	irgsp1_rep	three_prime_UTR	944561	944794	.	-	.	Parent=Os11t0121300-01
Chr11	irgsp1_rep	mRNA	947565	952283	.	-	.	ID=Os11t0121400-01;Name=Os11t0121400-01;Locus_id=Os11g0121400;CGSNL Gene Symbol=RLCK309;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 309;Oryzabase Gene Symbol Synonym(s)=OsRLCK309;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 309;Note=Similar to Protein kinase APK1A%2C chloroplast precursor (EC 2.7.1.-).;Transcript_evidence=AK102267 (DDBJ%2C Best hit);ORF_evidence=B4F8X2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033088N21;Oryzabase=18982;Expression=AK102267;TENOR=Os11t0121400-01;KEGG=Os11t0121400-01
Chr11	irgsp1_rep	five_prime_UTR	952001	952283	.	-	.	Parent=Os11t0121400-01
Chr11	irgsp1_rep	CDS	951946	952000	.	-	0	Parent=Os11t0121400-01
Chr11	irgsp1_rep	CDS	950465	950799	.	-	2	Parent=Os11t0121400-01
Chr11	irgsp1_rep	CDS	949624	949759	.	-	0	Parent=Os11t0121400-01
Chr11	irgsp1_rep	CDS	948736	948872	.	-	2	Parent=Os11t0121400-01
Chr11	irgsp1_rep	CDS	948496	948619	.	-	0	Parent=Os11t0121400-01
Chr11	irgsp1_rep	CDS	947873	948327	.	-	2	Parent=Os11t0121400-01
Chr11	irgsp1_rep	three_prime_UTR	947565	947872	.	-	.	Parent=Os11t0121400-01
Chr11	irgsp1_rep	mRNA	959445	963088	.	-	.	ID=Os11t0121500-01;Name=Os11t0121500-01;Locus_id=Os11g0121500;Note=Protein kinase-like domain containing protein.;Transcript_evidence=AK102976 (DDBJ%2C Best hit);ORF_evidence=B4F8X2 (UniProt);NIAS_FLcDNA=J033115M19;Expression=AK102976;TENOR=Os11t0121500-01;KEGG=Os11t0121500-01
Chr11	irgsp1_rep	five_prime_UTR	963049	963088	.	-	.	Parent=Os11t0121500-01
Chr11	irgsp1_rep	CDS	962994	963048	.	-	0	Parent=Os11t0121500-01
Chr11	irgsp1_rep	CDS	959796	960178	.	-	2	Parent=Os11t0121500-01
Chr11	irgsp1_rep	three_prime_UTR	959781	959795	.	-	.	Parent=Os11t0121500-01
Chr11	irgsp1_rep	three_prime_UTR	959445	959583	.	-	.	Parent=Os11t0121500-01
Chr11	irgsp1_rep	mRNA	960291	962798	.	-	.	ID=Os11t0121600-01;Name=Os11t0121600-01;Locus_id=Os11g0121600;Note=Conserved hypothetical protein.;Transcript_evidence=AK121832 (DDBJ%2C Best hit);ORF_evidence=Q2RB86 (UniProt);NIAS_FLcDNA=J033099M19;Expression=AK121832;TENOR=Os11t0121600-01;KEGG=Os11t0121600-01
Chr11	irgsp1_rep	five_prime_UTR	961098	962798	.	-	.	Parent=Os11t0121600-01
Chr11	irgsp1_rep	CDS	960561	961097	.	-	0	Parent=Os11t0121600-01
Chr11	irgsp1_rep	three_prime_UTR	960291	960560	.	-	.	Parent=Os11t0121600-01
Chr11	irgsp1_rep	mRNA	960485	961157	.	-	.	ID=Os11t0121600-02;Name=Os11t0121600-02;Locus_id=Os11g0121600;Note=Conserved hypothetical protein.;Transcript_evidence=AK063194 (DDBJ%2C Best hit);ORF_evidence=Q2RB86 (UniProt);NIAS_FLcDNA=001-112-C01;Expression=AK063194;TENOR=Os11t0121600-02;KEGG=Os11t0121600-02
Chr11	irgsp1_rep	five_prime_UTR	961098	961157	.	-	.	Parent=Os11t0121600-02
Chr11	irgsp1_rep	CDS	960561	961097	.	-	0	Parent=Os11t0121600-02
Chr11	irgsp1_rep	three_prime_UTR	960485	960560	.	-	.	Parent=Os11t0121600-02
Chr11	irgsp1_rep	mRNA	970145	971857	.	-	.	ID=Os11t0122150-00;Name=Os11t0122150-00;Locus_id=Os11g0122150;Note=Similar to serine/threonine-protein kinase NAK.;Transcript_evidence=ab initio prediction;ORF_evidence=B4F8X2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);TENOR=Os11t0122150-00;KEGG=Os11t0122150-00
Chr11	irgsp1_rep	CDS	971803	971857	.	-	0	Parent=Os11t0122150-00
Chr11	irgsp1_rep	CDS	970145	970395	.	-	2	Parent=Os11t0122150-00
Chr11	irgsp1_rep	mRNA	1020435	1023211	.	+	.	ID=Os11t0122800-00;Name=Os11t0122800-00;Locus_id=Os11g0122800;Note=Similar to Auxin Efflux Carrier family protein.;Transcript_evidence=EU957827 (DDBJ);ORF_evidence=Q2RB75 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Auxin efflux carrier (IPR004776);TENOR=Os11t0122800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	1020435	1020435	.	+	.	Parent=Os11t0122800-00
Chr11	irgsp1_rep	CDS	1020436	1021205	.	+	0	Parent=Os11t0122800-00
Chr11	irgsp1_rep	CDS	1021301	1021386	.	+	1	Parent=Os11t0122800-00
Chr11	irgsp1_rep	CDS	1021552	1021586	.	+	2	Parent=Os11t0122800-00
Chr11	irgsp1_rep	three_prime_UTR	1021587	1021709	.	+	.	Parent=Os11t0122800-00
Chr11	irgsp1_rep	three_prime_UTR	1022959	1023035	.	+	.	Parent=Os11t0122800-00
Chr11	irgsp1_rep	three_prime_UTR	1023141	1023211	.	+	.	Parent=Os11t0122800-00
Chr11	irgsp1_rep	mRNA	1028032	1030679	.	-	.	ID=Os11t0123033-01;Name=Os11t0123033-01;Locus_id=Os11g0123033;Note=Amidase family protein.;Transcript_evidence=AK241912 (DDBJ%2C Best hit);ORF_evidence=Q01MY0 (UniProt);GO=Molecular Function: carbon-nitrogen ligase activity%2C with glutamine as amido-N-donor (GO:0016884);InterPro=Amidase (IPR000120),Amidase signature domain (IPR023631);NIAS_FLcDNA=J075062C10;TENOR=Os11t0123033-01;KEGG=Os11t0123033-01
Chr11	irgsp1_rep	five_prime_UTR	1030679	1030679	.	-	.	Parent=Os11t0123033-01
Chr11	irgsp1_rep	CDS	1030061	1030678	.	-	0	Parent=Os11t0123033-01
Chr11	irgsp1_rep	three_prime_UTR	1028032	1030060	.	-	.	Parent=Os11t0123033-01
Chr11	irgsp1_rep	mRNA	1033365	1037017	.	+	.	ID=Os11t0123066-01;Name=Os11t0123066-01;Locus_id=Os11g0123066;Note=Conserved hypothetical protein.;Transcript_evidence=AK241079 (DDBJ%2C Best hit);ORF_evidence=NP_001176326.1 (RefSeq);NIAS_FLcDNA=J065072C17;TENOR=Os11t0123066-01;KEGG=Os11t0123066-01
Chr11	irgsp1_rep	five_prime_UTR	1033365	1033501	.	+	.	Parent=Os11t0123066-01
Chr11	irgsp1_rep	five_prime_UTR	1033657	1035170	.	+	.	Parent=Os11t0123066-01
Chr11	irgsp1_rep	CDS	1035171	1035473	.	+	0	Parent=Os11t0123066-01
Chr11	irgsp1_rep	three_prime_UTR	1035474	1037017	.	+	.	Parent=Os11t0123066-01
Chr11	irgsp1_rep	mRNA	1071224	1076788	.	+	.	ID=Os11t0123250-01;Name=Os11t0123250-01;Locus_id=Os11g0123250;Note=Non-protein coding transcript.;Transcript_evidence=AK240726 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J043027P03;TENOR=Os11t0123250-01
Chr11	irgsp1_rep	exon	1071224	1071792	.	+	.	Parent=Os11t0123250-01
Chr11	irgsp1_rep	exon	1072182	1072304	.	+	.	Parent=Os11t0123250-01
Chr11	irgsp1_rep	exon	1072386	1072451	.	+	.	Parent=Os11t0123250-01
Chr11	irgsp1_rep	exon	1072946	1073066	.	+	.	Parent=Os11t0123250-01
Chr11	irgsp1_rep	exon	1073255	1073322	.	+	.	Parent=Os11t0123250-01
Chr11	irgsp1_rep	exon	1073511	1073582	.	+	.	Parent=Os11t0123250-01
Chr11	irgsp1_rep	exon	1074113	1074941	.	+	.	Parent=Os11t0123250-01
Chr11	irgsp1_rep	exon	1076273	1076788	.	+	.	Parent=Os11t0123250-01
Chr11	irgsp1_rep	mRNA	1071355	1076748	.	-	.	ID=Os11t0123400-00;Name=Os11t0123400-00;Locus_id=Os11g0123400;Oryzabase Gene Name Synonym(s)=Ethanolamine-phosphate cytidylyltransferase;Note=Similar to Phosphoethanolamine cytidylyltransferase.;Transcript_evidence=CT829315 (DDBJ%2C Secondary hit);ORF_evidence=B8BIT2 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=Cytidylyltransferase (IPR004820),Cytidyltransferase-related (IPR004821),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);Oryzabase=20158;TENOR=Os11t0123400-00;KEGG=Os11t0123400-00 (EC:2.7.7.14)
Chr11	irgsp1_rep	five_prime_UTR	1076608	1076748	.	-	.	Parent=Os11t0123400-00
Chr11	irgsp1_rep	CDS	1076273	1076607	.	-	0	Parent=Os11t0123400-00
Chr11	irgsp1_rep	CDS	1074706	1074941	.	-	1	Parent=Os11t0123400-00
Chr11	irgsp1_rep	CDS	1074113	1074294	.	-	2	Parent=Os11t0123400-00
Chr11	irgsp1_rep	CDS	1073511	1073582	.	-	0	Parent=Os11t0123400-00
Chr11	irgsp1_rep	CDS	1073255	1073322	.	-	0	Parent=Os11t0123400-00
Chr11	irgsp1_rep	CDS	1072946	1073066	.	-	1	Parent=Os11t0123400-00
Chr11	irgsp1_rep	CDS	1072386	1072451	.	-	0	Parent=Os11t0123400-00
Chr11	irgsp1_rep	CDS	1072182	1072304	.	-	0	Parent=Os11t0123400-00
Chr11	irgsp1_rep	CDS	1071721	1071792	.	-	0	Parent=Os11t0123400-00
Chr11	irgsp1_rep	three_prime_UTR	1071452	1071720	.	-	.	Parent=Os11t0123400-00
Chr11	irgsp1_rep	three_prime_UTR	1071355	1071443	.	-	.	Parent=Os11t0123400-00
Chr11	irgsp1_rep	mRNA	1078104	1082412	.	-	.	ID=Os11t0123500-01;Name=Os11t0123500-01;Locus_id=Os11g0123500;Note=Snf7 family protein.;Transcript_evidence=AK070935 (DDBJ%2C Best hit);ORF_evidence=NP_001078468.1 (RefSeq);GO=Biological Process: protein transport (GO:0015031);InterPro=Snf7 (IPR005024);NIAS_FLcDNA=J023068B07;Expression=AK070935;TENOR=Os11t0123500-01;KEGG=Os11t0123500-01
Chr11	irgsp1_rep	five_prime_UTR	1082337	1082412	.	-	.	Parent=Os11t0123500-01
Chr11	irgsp1_rep	five_prime_UTR	1082126	1082186	.	-	.	Parent=Os11t0123500-01
Chr11	irgsp1_rep	five_prime_UTR	1080882	1080929	.	-	.	Parent=Os11t0123500-01
Chr11	irgsp1_rep	CDS	1080795	1080881	.	-	0	Parent=Os11t0123500-01
Chr11	irgsp1_rep	CDS	1079676	1079775	.	-	0	Parent=Os11t0123500-01
Chr11	irgsp1_rep	CDS	1079154	1079239	.	-	2	Parent=Os11t0123500-01
Chr11	irgsp1_rep	CDS	1078956	1079047	.	-	0	Parent=Os11t0123500-01
Chr11	irgsp1_rep	CDS	1078566	1078680	.	-	1	Parent=Os11t0123500-01
Chr11	irgsp1_rep	CDS	1078234	1078404	.	-	0	Parent=Os11t0123500-01
Chr11	irgsp1_rep	three_prime_UTR	1078104	1078233	.	-	.	Parent=Os11t0123500-01
Chr11	irgsp1_rep	mRNA	1085511	1088476	.	+	.	ID=Os11t0123600-00;Name=Os11t0123600-00;Locus_id=Os11g0123600;CGSNL Gene Symbol=CHX10;CGSNL Gene Name=CATION/H+ EXCHANGER  10;Oryzabase Gene Symbol Synonym(s)=OsCHX10;Oryzabase Gene Name Synonym(s)=cation/H+ exchanger  10;Note=Hypothetical conserved gene.;Transcript_evidence=AK072782 (DDBJ%2C Secondary hit);ORF_evidence=Q2RB63 (UniProt);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: solute:hydrogen antiporter activity (GO:0015299);InterPro=Cation/H+ exchanger (IPR006153);Oryzabase=22370;Expression=AK072782;TENOR=Os11t0123600-00;KEGG=Os11t0123600-00
Chr11	irgsp1_rep	five_prime_UTR	1085511	1085583	.	+	.	Parent=Os11t0123600-00
Chr11	irgsp1_rep	CDS	1085584	1086846	.	+	0	Parent=Os11t0123600-00
Chr11	irgsp1_rep	CDS	1086932	1088188	.	+	0	Parent=Os11t0123600-00
Chr11	irgsp1_rep	three_prime_UTR	1088189	1088476	.	+	.	Parent=Os11t0123600-00
Chr11	irgsp1_rep	mRNA	1119746	1123350	.	+	.	ID=Os11t0124300-01;Name=Os11t0124300-01;Locus_id=Os11g0124300;RAP-DB Gene Symbol Synonym(s)=OsSCR1;RAP-DB Gene Name Synonym(s)=SCARECROW 1;CGSNL Gene Symbol=SCR1;CGSNL Gene Name=SCARECROW 1;Oryzabase Gene Symbol Synonym(s)=OsSCR1%2C OsSCR%2C OsGRAS-41%2C OsGRAS41%2C GRAS-41%2C GRAS41;Oryzabase Gene Name Synonym(s)=GRAS protein 41;Note=Transcription factor%2C Asymmetric cell division involved in radial pattern formation in roots%2C Control of stomatal development;Transcript_evidence=AK073467;ORF_evidence=Q2RB59;InterPro=Transcription factor GRAS (IPR005202);NIAS_FLcDNA=J033044H21;Manual Curation=March 5%2C 2020;Literature_PMID=30825332,25352666,17446396;Oryzabase=18669;Expression=AK073467;TENOR=Os11t0124300-01;KEGG=Os11t0124300-01
Chr11	irgsp1_rep	five_prime_UTR	1119746	1119936	.	+	.	Parent=Os11t0124300-01
Chr11	irgsp1_rep	CDS	1119937	1121450	.	+	0	Parent=Os11t0124300-01
Chr11	irgsp1_rep	CDS	1122136	1122577	.	+	1	Parent=Os11t0124300-01
Chr11	irgsp1_rep	three_prime_UTR	1122578	1123350	.	+	.	Parent=Os11t0124300-01
Chr11	irgsp1_rep	mRNA	1128553	1130384	.	+	.	ID=Os11t0124500-01;Name=Os11t0124500-01;Locus_id=Os11g0124500;Note=Protein of unknown function DUF607 family protein.;Transcript_evidence=AK241945 (DDBJ%2C Best hit);ORF_evidence=B9G951 (UniProt);InterPro=Coiled-coil domain containing protein 109%2C C-terminal (IPR006769);NIAS_FLcDNA=J075089N03;TENOR=Os11t0124500-01;KEGG=Os11t0124500-01
Chr11	irgsp1_rep	five_prime_UTR	1128553	1128567	.	+	.	Parent=Os11t0124500-01
Chr11	irgsp1_rep	CDS	1128568	1128963	.	+	0	Parent=Os11t0124500-01
Chr11	irgsp1_rep	CDS	1129844	1130299	.	+	0	Parent=Os11t0124500-01
Chr11	irgsp1_rep	three_prime_UTR	1130300	1130384	.	+	.	Parent=Os11t0124500-01
Chr11	irgsp1_rep	mRNA	1136069	1141411	.	-	.	ID=Os11t0124900-01;Name=Os11t0124900-01;Locus_id=Os11g0124900;CGSNL Gene Symbol=GAUT18;CGSNL Gene Name=GALACTURONOSYLTRANSFERASE 18;Oryzabase Gene Symbol Synonym(s)=OsGAUT18;Oryzabase Gene Name Synonym(s)=galacturonosyltransferase 18;Note=Glycosyl transferase%2C family 8 protein.;Transcript_evidence=AK105411 (DDBJ%2C Best hit);ORF_evidence=Q2QYE9 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 8 (IPR002495);NIAS_FLcDNA=001-123-G06;Oryzabase=23259;Expression=AK105411;TENOR=Os11t0124900-01;KEGG=Os11t0124900-01
Chr11	irgsp1_rep	five_prime_UTR	1141171	1141411	.	-	.	Parent=Os11t0124900-01
Chr11	irgsp1_rep	CDS	1141035	1141170	.	-	0	Parent=Os11t0124900-01
Chr11	irgsp1_rep	CDS	1140901	1140941	.	-	2	Parent=Os11t0124900-01
Chr11	irgsp1_rep	CDS	1140724	1140783	.	-	0	Parent=Os11t0124900-01
Chr11	irgsp1_rep	CDS	1139504	1139660	.	-	0	Parent=Os11t0124900-01
Chr11	irgsp1_rep	CDS	1139342	1139394	.	-	2	Parent=Os11t0124900-01
Chr11	irgsp1_rep	CDS	1138296	1138588	.	-	0	Parent=Os11t0124900-01
Chr11	irgsp1_rep	CDS	1137771	1138128	.	-	1	Parent=Os11t0124900-01
Chr11	irgsp1_rep	CDS	1137138	1137689	.	-	0	Parent=Os11t0124900-01
Chr11	irgsp1_rep	CDS	1136698	1136976	.	-	0	Parent=Os11t0124900-01
Chr11	irgsp1_rep	three_prime_UTR	1136069	1136697	.	-	.	Parent=Os11t0124900-01
Chr11	irgsp1_rep	mRNA	1162152	1164910	.	-	.	ID=Os11t0125500-01;Name=Os11t0125500-01;Locus_id=Os11g0125500;Note=Protein prenyltransferase domain containing protein.;Transcript_evidence=AK069138 (DDBJ%2C Best hit);ORF_evidence=B6SKC7 (UniProt);NIAS_FLcDNA=J023006B12;Expression=AK069138;TENOR=Os11t0125500-01;KEGG=Os11t0125500-01
Chr11	irgsp1_rep	five_prime_UTR	1164844	1164910	.	-	.	Parent=Os11t0125500-01
Chr11	irgsp1_rep	CDS	1164782	1164843	.	-	0	Parent=Os11t0125500-01
Chr11	irgsp1_rep	CDS	1164195	1164216	.	-	1	Parent=Os11t0125500-01
Chr11	irgsp1_rep	CDS	1163992	1164108	.	-	0	Parent=Os11t0125500-01
Chr11	irgsp1_rep	CDS	1163437	1163547	.	-	0	Parent=Os11t0125500-01
Chr11	irgsp1_rep	CDS	1163136	1163279	.	-	0	Parent=Os11t0125500-01
Chr11	irgsp1_rep	CDS	1162812	1163024	.	-	0	Parent=Os11t0125500-01
Chr11	irgsp1_rep	CDS	1162412	1162621	.	-	0	Parent=Os11t0125500-01
Chr11	irgsp1_rep	three_prime_UTR	1162152	1162411	.	-	.	Parent=Os11t0125500-01
Chr11	irgsp1_rep	mRNA	1167230	1168474	.	+	.	ID=Os11t0125601-00;Name=Os11t0125601-00;Locus_id=Os11g0125601;Note=Hypothetical conserved gene.;Transcript_evidence=CT835677 (DDBJ%2C Secondary hit);ORF_evidence=Q2QYE4 (UniProt);InterPro=Glutathione S-transferase%2C C-terminal-like (IPR010987);TENOR=Os11t0125601-00;KEGG=Os11t0125601-00
Chr11	irgsp1_rep	CDS	1167230	1167417	.	+	0	Parent=Os11t0125601-00
Chr11	irgsp1_rep	CDS	1168036	1168081	.	+	1	Parent=Os11t0125601-00
Chr11	irgsp1_rep	three_prime_UTR	1168082	1168474	.	+	.	Parent=Os11t0125601-00
Chr11	irgsp1_rep	mRNA	1168068	1170154	.	-	.	ID=Os11t0125700-00;Name=Os11t0125700-00;Locus_id=Os11g0125700;Note=RNA recognition motif domain domain containing protein.;Transcript_evidence=BT066791 (DDBJ);ORF_evidence=Q2QYE3 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);TENOR=Os11t0125700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	1169799	1170154	.	-	0	Parent=Os11t0125700-00
Chr11	irgsp1_rep	CDS	1169466	1169680	.	-	1	Parent=Os11t0125700-00
Chr11	irgsp1_rep	CDS	1169341	1169360	.	-	2	Parent=Os11t0125700-00
Chr11	irgsp1_rep	three_prime_UTR	1169284	1169340	.	-	.	Parent=Os11t0125700-00
Chr11	irgsp1_rep	three_prime_UTR	1168697	1169203	.	-	.	Parent=Os11t0125700-00
Chr11	irgsp1_rep	three_prime_UTR	1168068	1168257	.	-	.	Parent=Os11t0125700-00
Chr11	irgsp1_rep	mRNA	1175912	1179106	.	+	.	ID=Os11t0125900-00;Name=Os11t0125900-00;Locus_id=Os11g0125900;Oryzabase Gene Name Synonym(s)=GDA1/CD39 family protein;Note=Similar to GDA1/CD39 family protein%2C expressed.;Transcript_evidence=AK072692 (DDBJ%2C Secondary hit);ORF_evidence=Q2RB47 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Nucleoside phosphatase GDA1/CD39 (IPR000407);Oryzabase=9619;Expression=AK072692;TENOR=Os11t0125900-00;KEGG=Os11t0125900-00 (EC:3.6.1.6)
Chr11	irgsp1_rep	five_prime_UTR	1175912	1175938	.	+	.	Parent=Os11t0125900-00
Chr11	irgsp1_rep	CDS	1175939	1176181	.	+	0	Parent=Os11t0125900-00
Chr11	irgsp1_rep	CDS	1176446	1176574	.	+	0	Parent=Os11t0125900-00
Chr11	irgsp1_rep	CDS	1176833	1176889	.	+	0	Parent=Os11t0125900-00
Chr11	irgsp1_rep	CDS	1177022	1177320	.	+	0	Parent=Os11t0125900-00
Chr11	irgsp1_rep	CDS	1177599	1177690	.	+	1	Parent=Os11t0125900-00
Chr11	irgsp1_rep	CDS	1177835	1178049	.	+	2	Parent=Os11t0125900-00
Chr11	irgsp1_rep	CDS	1178261	1178444	.	+	0	Parent=Os11t0125900-00
Chr11	irgsp1_rep	CDS	1178653	1178789	.	+	2	Parent=Os11t0125900-00
Chr11	irgsp1_rep	three_prime_UTR	1178790	1179106	.	+	.	Parent=Os11t0125900-00
Chr11	irgsp1_rep	mRNA	1186210	1189668	.	+	.	ID=Os11t0126100-01;Name=Os11t0126100-01;Locus_id=Os11g0126100;Note=Multi antimicrobial extrusion protein MatE family protein.;Transcript_evidence=AK067875 (DDBJ%2C Best hit);ORF_evidence=Q2RB20 (UniProt);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);NIAS_FLcDNA=J013121C10;Expression=AK067875;TENOR=Os11t0126100-01;KEGG=Os11t0126100-01
Chr11	irgsp1_rep	five_prime_UTR	1186210	1186250	.	+	.	Parent=Os11t0126100-01
Chr11	irgsp1_rep	CDS	1186251	1186532	.	+	0	Parent=Os11t0126100-01
Chr11	irgsp1_rep	CDS	1187632	1188173	.	+	0	Parent=Os11t0126100-01
Chr11	irgsp1_rep	CDS	1188340	1188426	.	+	1	Parent=Os11t0126100-01
Chr11	irgsp1_rep	CDS	1188584	1188640	.	+	1	Parent=Os11t0126100-01
Chr11	irgsp1_rep	CDS	1188741	1188979	.	+	1	Parent=Os11t0126100-01
Chr11	irgsp1_rep	CDS	1189065	1189183	.	+	2	Parent=Os11t0126100-01
Chr11	irgsp1_rep	CDS	1189267	1189353	.	+	0	Parent=Os11t0126100-01
Chr11	irgsp1_rep	CDS	1189514	1189594	.	+	0	Parent=Os11t0126100-01
Chr11	irgsp1_rep	three_prime_UTR	1189595	1189668	.	+	.	Parent=Os11t0126100-01
Chr11	irgsp1_rep	mRNA	1187572	1189189	.	-	.	ID=Os11t0126250-00;Name=Os11t0126250-00;Locus_id=Os11g0126250;Note=Hypothetical gene.;Transcript_evidence=BT054648 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0126250-00
Chr11	irgsp1_rep	five_prime_UTR	1189063	1189189	.	-	.	Parent=Os11t0126250-00
Chr11	irgsp1_rep	five_prime_UTR	1188646	1188977	.	-	.	Parent=Os11t0126250-00
Chr11	irgsp1_rep	five_prime_UTR	1188321	1188446	.	-	.	Parent=Os11t0126250-00
Chr11	irgsp1_rep	CDS	1188307	1188320	.	-	0	Parent=Os11t0126250-00
Chr11	irgsp1_rep	CDS	1187955	1188207	.	-	1	Parent=Os11t0126250-00
Chr11	irgsp1_rep	three_prime_UTR	1187572	1187954	.	-	.	Parent=Os11t0126250-00
Chr11	irgsp1_rep	mRNA	1202740	1206308	.	+	.	ID=Os11t0126400-00;Name=Os11t0126400-00;Locus_id=Os11g0126400;Note=Similar to GDA1/CD39 family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2RB41 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Nucleoside phosphatase GDA1/CD39 (IPR000407);TENOR=Os11t0126400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	1202740	1203015	.	+	0	Parent=Os11t0126400-00
Chr11	irgsp1_rep	CDS	1203386	1203514	.	+	0	Parent=Os11t0126400-00
Chr11	irgsp1_rep	CDS	1204497	1204553	.	+	0	Parent=Os11t0126400-00
Chr11	irgsp1_rep	CDS	1204634	1204932	.	+	0	Parent=Os11t0126400-00
Chr11	irgsp1_rep	CDS	1205258	1205349	.	+	1	Parent=Os11t0126400-00
Chr11	irgsp1_rep	CDS	1205466	1205680	.	+	2	Parent=Os11t0126400-00
Chr11	irgsp1_rep	CDS	1205861	1206044	.	+	0	Parent=Os11t0126400-00
Chr11	irgsp1_rep	CDS	1206166	1206308	.	+	2	Parent=Os11t0126400-00
Chr11	irgsp1_rep	mRNA	1210588	1211522	.	-	.	ID=Os11t0126500-00;Name=Os11t0126500-00;Locus_id=Os11g0126500;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2RB42 (UniProt);TENOR=Os11t0126500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	1211383	1211522	.	-	0	Parent=Os11t0126500-00
Chr11	irgsp1_rep	CDS	1211036	1211137	.	-	1	Parent=Os11t0126500-00
Chr11	irgsp1_rep	CDS	1210588	1210813	.	-	1	Parent=Os11t0126500-00
Chr11	irgsp1_rep	mRNA	1225190	1226553	.	+	.	ID=Os11t0126800-01;Name=Os11t0126800-01;Locus_id=Os11g0126800;Note=Nucleoside phosphatase GDA1/CD39 family protein.;Transcript_evidence=AK059453 (DDBJ%2C Best hit);ORF_evidence=Q2RB41 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Nucleoside phosphatase GDA1/CD39 (IPR000407);NIAS_FLcDNA=001-028-B11;Expression=AK059453;TENOR=Os11t0126800-01;KEGG=Os11t0126800-01
Chr11	irgsp1_rep	five_prime_UTR	1225190	1225190	.	+	.	Parent=Os11t0126800-01
Chr11	irgsp1_rep	CDS	1225191	1225284	.	+	0	Parent=Os11t0126800-01
Chr11	irgsp1_rep	CDS	1225665	1225879	.	+	2	Parent=Os11t0126800-01
Chr11	irgsp1_rep	CDS	1226033	1226216	.	+	0	Parent=Os11t0126800-01
Chr11	irgsp1_rep	CDS	1226331	1226461	.	+	2	Parent=Os11t0126800-01
Chr11	irgsp1_rep	three_prime_UTR	1226462	1226553	.	+	.	Parent=Os11t0126800-01
Chr11	irgsp1_rep	mRNA	1233932	1235977	.	+	.	ID=Os11t0126900-01;Name=Os11t0126900-01;Locus_id=Os11g0126900;RAP-DB Gene Symbol Synonym(s)=NAC122%2C OsNAC10%2C ONAC122%2C NAC122;RAP-DB Gene Name Synonym(s)=NAC DOMAIN-CONTAINING PROTEIN 122%2C NAC domain-containing protein 10%2C NAC domain-containing protein 122;CGSNL Gene Symbol=NAC122;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 122;Oryzabase Gene Symbol Synonym(s)=OsNAC10%2C NAC10%2C ONAC122%2C NAC122;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 10%2C NAC domain-containing protein 122;Note=NAC-domain protein%2C Drought tolerance;Transcript_evidence=AK069257 (Genbank);ORF_evidence=Q0IUZ3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=J023011O06;Manual Curation=June 25%2C 2010;Literature_PMID=20335401;Oryzabase=8952;TENOR=Os11t0126900-01;KEGG=Os11t0126900-01
Chr11	irgsp1_rep	five_prime_UTR	1233932	1234134	.	+	.	Parent=Os11t0126900-01
Chr11	irgsp1_rep	CDS	1234135	1234306	.	+	0	Parent=Os11t0126900-01
Chr11	irgsp1_rep	CDS	1234434	1234741	.	+	2	Parent=Os11t0126900-01
Chr11	irgsp1_rep	CDS	1235008	1235043	.	+	0	Parent=Os11t0126900-01
Chr11	irgsp1_rep	three_prime_UTR	1235044	1235977	.	+	.	Parent=Os11t0126900-01
Chr11	irgsp1_rep	mRNA	1240063	1245394	.	+	.	ID=Os11t0127000-01;Name=Os11t0127000-01;Locus_id=Os11g0127000;CGSNL Gene Symbol=NAC123;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 123;Oryzabase Gene Symbol Synonym(s)=ONAC123%2C N77;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 123%2C NAC domain containing protein 77;Note=Similar to NAC domain-containing protein 77.;Transcript_evidence=AK288271 (DDBJ%2C Best hit);ORF_evidence=Q5CD17 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=J090017A22;Oryzabase=15883;TENOR=Os11t0127000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	1240063	1241479	.	+	.	Parent=Os11t0127000-01
Chr11	irgsp1_rep	CDS	1241480	1242367	.	+	0	Parent=Os11t0127000-01
Chr11	irgsp1_rep	three_prime_UTR	1242368	1245394	.	+	.	Parent=Os11t0127000-01
Chr11	irgsp1_rep	mRNA	1269314	1271179	.	+	.	ID=Os11t0127600-01;Name=Os11t0127600-01;Locus_id=Os11g0127600;RAP-DB Gene Symbol Synonym(s)=ONAC045;CGSNL Gene Symbol=NAC45;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 45;Oryzabase Gene Symbol Synonym(s)=ONAC045%2C ONAC45%2C DLN243%2C OsDLN243%2C OsNAM%2C NAM;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 045%2C NAC domain-containing protein 45%2C DLN repressor 243%2C DLN motif protein 243%2C No Apical Meristem;Note=NAC transcription factor%2C Drought and salt tolerance;Transcript_evidence=AK067922;ORF_evidence=Q2RB33;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=NAC domain superfamily (IPR036093),NAC domain (IPR003441);NIAS_FLcDNA=J013121J10;Manual Curation=October 27%2C 2020;Literature_PMID=19135985;Oryzabase=11483;Expression=AK067922;TENOR=Os11t0127600-01;KEGG=Os11t0127600-01;Subcellular location=nucleus (GO:0005634)
Chr11	irgsp1_rep	five_prime_UTR	1269314	1269470	.	+	.	Parent=Os11t0127600-01
Chr11	irgsp1_rep	CDS	1269471	1269666	.	+	0	Parent=Os11t0127600-01
Chr11	irgsp1_rep	CDS	1269832	1270157	.	+	2	Parent=Os11t0127600-01
Chr11	irgsp1_rep	CDS	1270290	1270847	.	+	0	Parent=Os11t0127600-01
Chr11	irgsp1_rep	three_prime_UTR	1270848	1271179	.	+	.	Parent=Os11t0127600-01
Chr11	irgsp1_rep	mRNA	1274493	1279077	.	-	.	ID=Os11t0127700-01;Name=Os11t0127700-01;Locus_id=Os11g0127700;Note=Conserved hypothetical protein.;Transcript_evidence=AK103742 (DDBJ%2C Best hit);ORF_evidence=A2ZAZ8 (UniProt);NIAS_FLcDNA=J033138L11;Expression=AK103742;TENOR=Os11t0127700-01;KEGG=Os11t0127700-01
Chr11	irgsp1_rep	five_prime_UTR	1278981	1279077	.	-	.	Parent=Os11t0127700-01
Chr11	irgsp1_rep	CDS	1278764	1278873	.	-	0	Parent=Os11t0127700-01
Chr11	irgsp1_rep	CDS	1276545	1276647	.	-	1	Parent=Os11t0127700-01
Chr11	irgsp1_rep	CDS	1276347	1276406	.	-	0	Parent=Os11t0127700-01
Chr11	irgsp1_rep	CDS	1275985	1276047	.	-	0	Parent=Os11t0127700-01
Chr11	irgsp1_rep	CDS	1275599	1275796	.	-	0	Parent=Os11t0127700-01
Chr11	irgsp1_rep	CDS	1275429	1275525	.	-	0	Parent=Os11t0127700-01
Chr11	irgsp1_rep	CDS	1275135	1275349	.	-	2	Parent=Os11t0127700-01
Chr11	irgsp1_rep	CDS	1274809	1274901	.	-	0	Parent=Os11t0127700-01
Chr11	irgsp1_rep	three_prime_UTR	1274493	1274808	.	-	.	Parent=Os11t0127700-01
Chr11	irgsp1_rep	mRNA	1280059	1281690	.	+	.	ID=Os11t0127800-01;Name=Os11t0127800-01;Locus_id=Os11g0127800;Oryzabase Gene Name Synonym(s)=FHA domain containing protein;Note=Similar to FHA domain containing protein%2C expressed.;Transcript_evidence=AK059969 (DDBJ%2C Best hit),AK104179 (DDBJ%2C Best hit);ORF_evidence=Q2QYC9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Forkhead-associated (FHA) domain (IPR000253),SMAD/FHA domain (IPR008984);NIAS_FLcDNA=006-211-G08,006-301-G06;Oryzabase=21863;TENOR=Os11t0127800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	1280059	1280059	.	+	.	Parent=Os11t0127800-01
Chr11	irgsp1_rep	CDS	1280060	1280444	.	+	0	Parent=Os11t0127800-01
Chr11	irgsp1_rep	CDS	1280642	1280706	.	+	2	Parent=Os11t0127800-01
Chr11	irgsp1_rep	CDS	1280831	1280894	.	+	0	Parent=Os11t0127800-01
Chr11	irgsp1_rep	CDS	1281022	1281168	.	+	2	Parent=Os11t0127800-01
Chr11	irgsp1_rep	CDS	1281302	1281426	.	+	2	Parent=Os11t0127800-01
Chr11	irgsp1_rep	three_prime_UTR	1281427	1281690	.	+	.	Parent=Os11t0127800-01
Chr11	irgsp1_rep	mRNA	1280119	1281678	.	+	.	ID=Os11t0127800-02;Name=Os11t0127800-02;Locus_id=Os11g0127800;Oryzabase Gene Name Synonym(s)=FHA domain containing protein;Note=Similar to FHA domain containing protein%2C expressed.;Transcript_evidence=AK104250 (DDBJ%2C Best hit),AK104015 (DDBJ%2C Best hit);ORF_evidence=Q2QYC9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Forkhead-associated (FHA) domain (IPR000253),SMAD/FHA domain (IPR008984);NIAS_FLcDNA=006-308-H05,001-007-F09;Oryzabase=21863;TENOR=Os11t0127800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	1280119	1280119	.	+	.	Parent=Os11t0127800-02
Chr11	irgsp1_rep	CDS	1280120	1280444	.	+	0	Parent=Os11t0127800-02
Chr11	irgsp1_rep	CDS	1280642	1280706	.	+	2	Parent=Os11t0127800-02
Chr11	irgsp1_rep	CDS	1280831	1280894	.	+	0	Parent=Os11t0127800-02
Chr11	irgsp1_rep	CDS	1281022	1281168	.	+	2	Parent=Os11t0127800-02
Chr11	irgsp1_rep	CDS	1281302	1281426	.	+	2	Parent=Os11t0127800-02
Chr11	irgsp1_rep	three_prime_UTR	1281427	1281678	.	+	.	Parent=Os11t0127800-02
Chr11	irgsp1_rep	mRNA	1285452	1286251	.	-	.	ID=Os11t0127900-01;Name=Os11t0127900-01;Locus_id=Os11g0127900;Oryzabase Gene Symbol Synonym(s)=OsRP1;Oryzabase Gene Name Synonym(s)=ribosomal protein 1;Note=Similar to 40S ribosomal protein S16.;Transcript_evidence=AK059550 (DDBJ%2C Best hit);ORF_evidence=Q0IQF7 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S9 (IPR000754),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Ribosomal protein S5 domain 2-type fold (IPR020568),Ribosomal protein S9%2C conserved site (IPR020574);NIAS_FLcDNA=001-029-G01;Oryzabase=15292;Expression=AK059550;TENOR=Os11t0127900-01;KEGG=Os11t0127900-01
Chr11	irgsp1_rep	five_prime_UTR	1286172	1286251	.	-	.	Parent=Os11t0127900-01
Chr11	irgsp1_rep	CDS	1285722	1286171	.	-	0	Parent=Os11t0127900-01
Chr11	irgsp1_rep	three_prime_UTR	1285452	1285721	.	-	.	Parent=Os11t0127900-01
Chr11	irgsp1_rep	mRNA	1286412	1286660	.	+	.	ID=Os11t0127951-00;Name=Os11t0127951-00;Locus_id=Os11g0127951;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os11t0127951-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	1286412	1286660	.	+	0	Parent=Os11t0127951-00
Chr11	irgsp1_rep	mRNA	1288730	1292348	.	-	.	ID=Os11t0128000-01;Name=Os11t0128000-01;Locus_id=Os11g0128000;Note=Similar to secondary cell wall-related glycosyltransferase family 47.;Transcript_evidence=AK243483 (DDBJ%2C Best hit);ORF_evidence=NP_001151894.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);NIAS_FLcDNA=J100073C15;TENOR=Os11t0128000-01;KEGG=Os11t0128000-01
Chr11	irgsp1_rep	five_prime_UTR	1292243	1292348	.	-	.	Parent=Os11t0128000-01
Chr11	irgsp1_rep	CDS	1291328	1292242	.	-	0	Parent=Os11t0128000-01
Chr11	irgsp1_rep	CDS	1289080	1289595	.	-	0	Parent=Os11t0128000-01
Chr11	irgsp1_rep	three_prime_UTR	1288730	1289079	.	-	.	Parent=Os11t0128000-01
Chr11	irgsp1_rep	mRNA	1298250	1298986	.	+	.	ID=Os11t0128300-01;Name=Os11t0128300-01;Locus_id=Os11g0128300;Note=Similar to ZF-HD homeobox protein (Fragment).;Transcript_evidence=AK063715 (DDBJ%2C Best hit);ORF_evidence=Q2QYC5 (UniProt);InterPro=ZF-HD homeobox protein%2C Cys/His-rich dimerisation domain (IPR006456);NIAS_FLcDNA=001-120-C04;Expression=AK063715;TENOR=Os11t0128300-01;KEGG=Os11t0128300-01
Chr11	irgsp1_rep	five_prime_UTR	1298250	1298353	.	+	.	Parent=Os11t0128300-01
Chr11	irgsp1_rep	CDS	1298354	1298671	.	+	0	Parent=Os11t0128300-01
Chr11	irgsp1_rep	three_prime_UTR	1298672	1298986	.	+	.	Parent=Os11t0128300-01
Chr11	irgsp1_rep	mRNA	1306316	1308673	.	+	.	ID=Os11t0128400-01;Name=Os11t0128400-01;Locus_id=Os11g0128400;CGSNL Gene Symbol=CDC45-2;CGSNL Gene Name=CELL DIVISION  CONTROL 45-2;Oryzabase Gene Symbol Synonym(s)=OsCDC45%2C CDC45;Note=CDC45-like protein family protein.;Transcript_evidence=AK102291 (DDBJ%2C Best hit);ORF_evidence=NP_189146.1 (RefSeq);GO=Biological Process: DNA-dependent DNA replication initiation (GO:0006270);InterPro=CDC45 family (IPR003874);NIAS_FLcDNA=J033089K18;Oryzabase=9205;Expression=AK102291;TENOR=Os11t0128400-01;KEGG=Os11t0128400-01
Chr11	irgsp1_rep	five_prime_UTR	1306316	1306366	.	+	.	Parent=Os11t0128400-01
Chr11	irgsp1_rep	CDS	1306367	1308181	.	+	0	Parent=Os11t0128400-01
Chr11	irgsp1_rep	three_prime_UTR	1308182	1308673	.	+	.	Parent=Os11t0128400-01
Chr11	irgsp1_rep	mRNA	1317256	1318705	.	-	.	ID=Os11t0128500-01;Name=Os11t0128500-01;Locus_id=Os11g0128500;Note=Similar to Myb factor.;Transcript_evidence=AK241549 (DDBJ%2C Best hit);ORF_evidence=O04109 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J065176M15;TENOR=Os11t0128500-01;KEGG=Os11t0128500-01
Chr11	irgsp1_rep	five_prime_UTR	1318574	1318705	.	-	.	Parent=Os11t0128500-01
Chr11	irgsp1_rep	CDS	1318441	1318573	.	-	0	Parent=Os11t0128500-01
Chr11	irgsp1_rep	CDS	1317544	1318337	.	-	2	Parent=Os11t0128500-01
Chr11	irgsp1_rep	three_prime_UTR	1317256	1317543	.	-	.	Parent=Os11t0128500-01
Chr11	irgsp1_rep	mRNA	1324619	1325077	.	+	.	ID=Os11t0128600-00;Name=Os11t0128600-00;Locus_id=Os11g0128600;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001065637.1 (RefSeq);TENOR=Os11t0128600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	1324619	1325077	.	+	0	Parent=Os11t0128600-00
Chr11	irgsp1_rep	mRNA	1325587	1328972	.	-	.	ID=Os11t0128700-00;Name=Os11t0128700-00;Locus_id=Os11g0128700;Note=Mad3/BUB1 homology region 1 domain containing protein.;Transcript_evidence=AK102502 (DDBJ%2C Secondary hit);ORF_evidence=Q2RB24 (UniProt);InterPro=Mad3/BUB1 homology region 1 (IPR013212),Mitotic checkpoint serine/threonine protein kinase%2C Bub1 (IPR015661);TENOR=Os11t0128700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	1328927	1328972	.	-	.	Parent=Os11t0128700-00
Chr11	irgsp1_rep	CDS	1328802	1328926	.	-	0	Parent=Os11t0128700-00
Chr11	irgsp1_rep	CDS	1328571	1328715	.	-	1	Parent=Os11t0128700-00
Chr11	irgsp1_rep	CDS	1327998	1328155	.	-	0	Parent=Os11t0128700-00
Chr11	irgsp1_rep	CDS	1327538	1327686	.	-	1	Parent=Os11t0128700-00
Chr11	irgsp1_rep	CDS	1326877	1327311	.	-	2	Parent=Os11t0128700-00
Chr11	irgsp1_rep	CDS	1326005	1326858	.	-	2	Parent=Os11t0128700-00
Chr11	irgsp1_rep	three_prime_UTR	1325587	1326004	.	-	.	Parent=Os11t0128700-00
Chr11	irgsp1_rep	mRNA	1329442	1333415	.	-	.	ID=Os11t0128800-01;Name=Os11t0128800-01;Locus_id=Os11g0128800;Note=Similar to Homoserine dehydrogenase-like protein.;Transcript_evidence=AK071434 (DDBJ%2C Best hit);ORF_evidence=B8AES5 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: homoserine dehydrogenase activity (GO:0004412);InterPro=Homoserine dehydrogenase%2C catalytic (IPR001342),NAD(P)-binding domain (IPR016040),Homoserine dehydrogenase%2C conserved site (IPR019811),Homoserine dehydrogenase%2C short (IPR022697);NIAS_FLcDNA=J023098E10;Expression=AK071434;TENOR=Os11t0128800-01;KEGG=Os11t0128800-01 (EC:1.1.1.3)
Chr11	irgsp1_rep	five_prime_UTR	1333330	1333415	.	-	.	Parent=Os11t0128800-01
Chr11	irgsp1_rep	CDS	1333219	1333329	.	-	0	Parent=Os11t0128800-01
Chr11	irgsp1_rep	CDS	1332999	1333149	.	-	0	Parent=Os11t0128800-01
Chr11	irgsp1_rep	CDS	1332778	1332855	.	-	2	Parent=Os11t0128800-01
Chr11	irgsp1_rep	CDS	1332478	1332593	.	-	2	Parent=Os11t0128800-01
Chr11	irgsp1_rep	CDS	1332334	1332387	.	-	0	Parent=Os11t0128800-01
Chr11	irgsp1_rep	CDS	1331969	1332056	.	-	0	Parent=Os11t0128800-01
Chr11	irgsp1_rep	CDS	1331787	1331879	.	-	2	Parent=Os11t0128800-01
Chr11	irgsp1_rep	CDS	1331598	1331638	.	-	2	Parent=Os11t0128800-01
Chr11	irgsp1_rep	CDS	1331164	1331217	.	-	0	Parent=Os11t0128800-01
Chr11	irgsp1_rep	CDS	1330318	1330481	.	-	0	Parent=Os11t0128800-01
Chr11	irgsp1_rep	CDS	1330098	1330167	.	-	1	Parent=Os11t0128800-01
Chr11	irgsp1_rep	CDS	1329597	1329731	.	-	0	Parent=Os11t0128800-01
Chr11	irgsp1_rep	three_prime_UTR	1329442	1329596	.	-	.	Parent=Os11t0128800-01
Chr11	irgsp1_rep	mRNA	1334583	1336176	.	+	.	ID=Os11t0128932-00;Name=Os11t0128932-00;Locus_id=Os11g0128932;Note=Hypothetical gene.;Transcript_evidence=BT054648 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0128932-00;KEGG=Os11t0128932-00
Chr11	irgsp1_rep	five_prime_UTR	1334583	1334709	.	+	.	Parent=Os11t0128932-00
Chr11	irgsp1_rep	five_prime_UTR	1334796	1334895	.	+	.	Parent=Os11t0128932-00
Chr11	irgsp1_rep	CDS	1334896	1335050	.	+	0	Parent=Os11t0128932-00
Chr11	irgsp1_rep	CDS	1335147	1335223	.	+	1	Parent=Os11t0128932-00
Chr11	irgsp1_rep	CDS	1335304	1335320	.	+	2	Parent=Os11t0128932-00
Chr11	irgsp1_rep	three_prime_UTR	1335321	1335510	.	+	.	Parent=Os11t0128932-00
Chr11	irgsp1_rep	three_prime_UTR	1335595	1336176	.	+	.	Parent=Os11t0128932-00
Chr11	irgsp1_rep	mRNA	1341435	1344785	.	-	.	ID=Os11t0129000-00;Name=Os11t0129000-00;Locus_id=Os11g0129000;Note=Similar to Transparent testa 12 protein.;Transcript_evidence=AK067875 (DDBJ%2C Secondary hit);ORF_evidence=B6SSE0 (UniProt);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);TENOR=Os11t0129000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	1344585	1344785	.	-	0	Parent=Os11t0129000-00
Chr11	irgsp1_rep	CDS	1342930	1343471	.	-	0	Parent=Os11t0129000-00
Chr11	irgsp1_rep	CDS	1342677	1342763	.	-	1	Parent=Os11t0129000-00
Chr11	irgsp1_rep	CDS	1342463	1342519	.	-	1	Parent=Os11t0129000-00
Chr11	irgsp1_rep	CDS	1342124	1342362	.	-	1	Parent=Os11t0129000-00
Chr11	irgsp1_rep	CDS	1341920	1342038	.	-	2	Parent=Os11t0129000-00
Chr11	irgsp1_rep	CDS	1341750	1341836	.	-	0	Parent=Os11t0129000-00
Chr11	irgsp1_rep	CDS	1341509	1341589	.	-	0	Parent=Os11t0129000-00
Chr11	irgsp1_rep	three_prime_UTR	1341435	1341508	.	-	.	Parent=Os11t0129000-00
Chr11	irgsp1_rep	mRNA	1341914	1343536	.	+	.	ID=Os11t0129101-00;Name=Os11t0129101-00;Locus_id=Os11g0129101;Note=Non-protein coding transcript.;Transcript_evidence=BT054648 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0129101-00
Chr11	irgsp1_rep	exon	1341914	1342036	.	+	.	Parent=Os11t0129101-00
Chr11	irgsp1_rep	exon	1342122	1342389	.	+	.	Parent=Os11t0129101-00
Chr11	irgsp1_rep	exon	1342488	1342554	.	+	.	Parent=Os11t0129101-00
Chr11	irgsp1_rep	exon	1342630	1342794	.	+	.	Parent=Os11t0129101-00
Chr11	irgsp1_rep	exon	1342890	1343536	.	+	.	Parent=Os11t0129101-00
Chr11	irgsp1_rep	mRNA	1347822	1352335	.	-	.	ID=Os11t0129200-00;Name=Os11t0129200-00;Locus_id=Os11g0129200;Note=Multi antimicrobial extrusion protein MatE family protein.;Transcript_evidence=AK067521 (DDBJ%2C Secondary hit);ORF_evidence=Q2RB20 (UniProt);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);Expression=AK067521;TENOR=Os11t0129200-00;KEGG=Os11t0129200-00
Chr11	irgsp1_rep	five_prime_UTR	1352325	1352335	.	-	.	Parent=Os11t0129200-00
Chr11	irgsp1_rep	CDS	1352016	1352324	.	-	0	Parent=Os11t0129200-00
Chr11	irgsp1_rep	CDS	1349675	1350082	.	-	0	Parent=Os11t0129200-00
Chr11	irgsp1_rep	three_prime_UTR	1349541	1349674	.	-	.	Parent=Os11t0129200-00
Chr11	irgsp1_rep	three_prime_UTR	1349312	1349398	.	-	.	Parent=Os11t0129200-00
Chr11	irgsp1_rep	three_prime_UTR	1348959	1349015	.	-	.	Parent=Os11t0129200-00
Chr11	irgsp1_rep	three_prime_UTR	1348618	1348856	.	-	.	Parent=Os11t0129200-00
Chr11	irgsp1_rep	three_prime_UTR	1348410	1348528	.	-	.	Parent=Os11t0129200-00
Chr11	irgsp1_rep	three_prime_UTR	1348242	1348328	.	-	.	Parent=Os11t0129200-00
Chr11	irgsp1_rep	three_prime_UTR	1347822	1348118	.	-	.	Parent=Os11t0129200-00
Chr11	irgsp1_rep	mRNA	1348404	1350109	.	+	.	ID=Os11t0129301-00;Name=Os11t0129301-00;Locus_id=Os11g0129301;Note=Hypothetical gene.;Transcript_evidence=BT054648 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0129301-00
Chr11	irgsp1_rep	five_prime_UTR	1348404	1348526	.	+	.	Parent=Os11t0129301-00
Chr11	irgsp1_rep	five_prime_UTR	1348616	1348876	.	+	.	Parent=Os11t0129301-00
Chr11	irgsp1_rep	five_prime_UTR	1349197	1349452	.	+	.	Parent=Os11t0129301-00
Chr11	irgsp1_rep	five_prime_UTR	1349530	1349795	.	+	.	Parent=Os11t0129301-00
Chr11	irgsp1_rep	CDS	1349796	1350008	.	+	0	Parent=Os11t0129301-00
Chr11	irgsp1_rep	three_prime_UTR	1350009	1350109	.	+	.	Parent=Os11t0129301-00
Chr11	irgsp1_rep	mRNA	1359188	1360558	.	-	.	ID=Os11t0129500-01;Name=Os11t0129500-01;Locus_id=Os11g0129500;CGSNL Gene Symbol=GELP110;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 110;Oryzabase Gene Symbol Synonym(s)=OsGELP110;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 110;Note=Similar to GDSL-like Lipase/Acylhydrolase family protein%2C expressed.;Transcript_evidence=AK107889 (DDBJ%2C Best hit);ORF_evidence=Q2RB18 (UniProt);NIAS_FLcDNA=002-134-E04;Oryzabase=11060;TENOR=Os11t0129500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	1360545	1360558	.	-	.	Parent=Os11t0129500-01
Chr11	irgsp1_rep	CDS	1360315	1360544	.	-	0	Parent=Os11t0129500-01
Chr11	irgsp1_rep	CDS	1359855	1359918	.	-	1	Parent=Os11t0129500-01
Chr11	irgsp1_rep	three_prime_UTR	1359630	1359854	.	-	.	Parent=Os11t0129500-01
Chr11	irgsp1_rep	three_prime_UTR	1359188	1359542	.	-	.	Parent=Os11t0129500-01
Chr11	irgsp1_rep	mRNA	1359188	1360544	.	-	.	ID=Os11t0129500-02;Name=Os11t0129500-02;Locus_id=Os11g0129500;RAP-DB Gene Symbol Synonym(s)=OsGELP110;RAP-DB Gene Name Synonym(s)=GDSL esterase/lipase protein 110;CGSNL Gene Symbol=GELP110;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 110;Oryzabase Gene Symbol Synonym(s)=OsGELP110;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 110;Note=GDSL esterase/lipase protein%2C Pollen exine development;Transcript_evidence=Inferred from literature;ORF_evidence=Q2RB18;GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=SGNH hydrolase superfamily (IPR036514),GDSL lipase/esterase (IPR001087);Manual Curation=February 19%2C 2020;Literature_PMID=32068333;Oryzabase=11060;Subcellular location=peroxisome (GO:0005777)
Chr11	irgsp1_rep	CDS	1360340	1360544	.	-	0	Parent=Os11t0129500-02
Chr11	irgsp1_rep	CDS	1359630	1360253	.	-	2	Parent=Os11t0129500-02
Chr11	irgsp1_rep	CDS	1359283	1359542	.	-	2	Parent=Os11t0129500-02
Chr11	irgsp1_rep	three_prime_UTR	1359188	1359282	.	-	.	Parent=Os11t0129500-02
Chr11	irgsp1_rep	mRNA	1360778	1364052	.	+	.	ID=Os11t0129600-01;Name=Os11t0129600-01;Locus_id=Os11g0129600;Note=Hypothetical conserved gene.;Transcript_evidence=AK241463 (DDBJ%2C Best hit);ORF_evidence=NP_001066048.1 (RefSeq);GO=Biological Process: phagocytosis (GO:0006909),Cellular Component: cytoskeleton (GO:0005856);InterPro=Engulfment/cell motility%2C ELMO (IPR006816);NIAS_FLcDNA=J065164H15;TENOR=Os11t0129600-01;KEGG=Os11t0129600-01
Chr11	irgsp1_rep	five_prime_UTR	1360778	1360877	.	+	.	Parent=Os11t0129600-01
Chr11	irgsp1_rep	five_prime_UTR	1361510	1361545	.	+	.	Parent=Os11t0129600-01
Chr11	irgsp1_rep	CDS	1361546	1361680	.	+	0	Parent=Os11t0129600-01
Chr11	irgsp1_rep	CDS	1361778	1361886	.	+	0	Parent=Os11t0129600-01
Chr11	irgsp1_rep	CDS	1362021	1362133	.	+	2	Parent=Os11t0129600-01
Chr11	irgsp1_rep	CDS	1362719	1362787	.	+	0	Parent=Os11t0129600-01
Chr11	irgsp1_rep	CDS	1362947	1363062	.	+	0	Parent=Os11t0129600-01
Chr11	irgsp1_rep	CDS	1363183	1363222	.	+	1	Parent=Os11t0129600-01
Chr11	irgsp1_rep	three_prime_UTR	1363223	1363232	.	+	.	Parent=Os11t0129600-01
Chr11	irgsp1_rep	three_prime_UTR	1363331	1363451	.	+	.	Parent=Os11t0129600-01
Chr11	irgsp1_rep	three_prime_UTR	1363574	1363716	.	+	.	Parent=Os11t0129600-01
Chr11	irgsp1_rep	three_prime_UTR	1363802	1364052	.	+	.	Parent=Os11t0129600-01
Chr11	irgsp1_rep	mRNA	1364213	1369744	.	-	.	ID=Os11t0129700-01;Name=Os11t0129700-01;Locus_id=Os11g0129700;CGSNL Gene Symbol=WRI1-1;CGSNL Gene Name=WRINKLED1-1;Oryzabase Gene Symbol Synonym(s)=AP2/EREBP131%2C AP2/EREBP#131%2C OsWRI1-1;Oryzabase Gene Name Synonym(s)=APETALA2/ethylene-responsive element binding protein 131%2C WRINKLED 1-1%2C WRI1 like protein 1-1;Note=Similar to AP2-1 protein (Fragment).;Transcript_evidence=AK112088 (DDBJ%2C Best hit);ORF_evidence=Q2RB16 (UniProt);NIAS_FLcDNA=002-105-A07;Oryzabase=10671;Expression=AK112088;TENOR=Os11t0129700-01;KEGG=Os11t0129700-01
Chr11	irgsp1_rep	five_prime_UTR	1369690	1369744	.	-	.	Parent=Os11t0129700-01
Chr11	irgsp1_rep	CDS	1369407	1369689	.	-	0	Parent=Os11t0129700-01
Chr11	irgsp1_rep	CDS	1368760	1368845	.	-	2	Parent=Os11t0129700-01
Chr11	irgsp1_rep	CDS	1368391	1368399	.	-	0	Parent=Os11t0129700-01
Chr11	irgsp1_rep	CDS	1368057	1368145	.	-	0	Parent=Os11t0129700-01
Chr11	irgsp1_rep	CDS	1367852	1367976	.	-	1	Parent=Os11t0129700-01
Chr11	irgsp1_rep	CDS	1367430	1367464	.	-	2	Parent=Os11t0129700-01
Chr11	irgsp1_rep	three_prime_UTR	1367388	1367429	.	-	.	Parent=Os11t0129700-01
Chr11	irgsp1_rep	three_prime_UTR	1364213	1365400	.	-	.	Parent=Os11t0129700-01
Chr11	irgsp1_rep	mRNA	1364210	1369689	.	-	.	ID=Os11t0129700-02;Name=Os11t0129700-02;Locus_id=Os11g0129700;RAP-DB Gene Symbol Synonym(s)=OsWRI1-1;RAP-DB Gene Name Synonym(s)=WRINKLED1-1;CGSNL Gene Symbol=WRI1-1;CGSNL Gene Name=WRINKLED1-1;Oryzabase Gene Symbol Synonym(s)=AP2/EREBP131%2C AP2/EREBP#131%2C OsWRI1-1;Oryzabase Gene Name Synonym(s)=APETALA2/ethylene-responsive element binding protein 131%2C WRINKLED 1-1%2C WRI1 like protein 1-1;Note=AP2 domain transcription factor%2C Seed fatty acid synthesis;Transcript_evidence=Inferred from literature;ORF_evidence=Q2RB16;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-binding transcription factor activity (GO:0003700);InterPro=DNA-binding domain superfamily (IPR016177),AP2/ERF domain superfamily (IPR036955),AP2/ERF domain (IPR001471);Manual Curation=February 25%2C 2020;Literature_PMID=31277505;Oryzabase=10671
Chr11	irgsp1_rep	CDS	1369424	1369689	.	-	0	Parent=Os11t0129700-02
Chr11	irgsp1_rep	CDS	1368760	1368845	.	-	1	Parent=Os11t0129700-02
Chr11	irgsp1_rep	CDS	1368057	1368154	.	-	2	Parent=Os11t0129700-02
Chr11	irgsp1_rep	CDS	1367852	1367976	.	-	0	Parent=Os11t0129700-02
Chr11	irgsp1_rep	CDS	1367388	1367464	.	-	1	Parent=Os11t0129700-02
Chr11	irgsp1_rep	CDS	1364703	1365400	.	-	2	Parent=Os11t0129700-02
Chr11	irgsp1_rep	three_prime_UTR	1364210	1364702	.	-	.	Parent=Os11t0129700-02
Chr11	irgsp1_rep	mRNA	1372531	1375731	.	-	.	ID=Os11t0129800-01;Name=Os11t0129800-01;Locus_id=Os11g0129800;Note=Hypothetical conserved gene.;Transcript_evidence=AK287524 (DDBJ%2C Best hit);ORF_evidence=B8BIV0 (UniProt);NIAS_FLcDNA=J053075O16;TENOR=Os11t0129800-01;KEGG=Os11t0129800-01
Chr11	irgsp1_rep	five_prime_UTR	1375653	1375731	.	-	.	Parent=Os11t0129800-01
Chr11	irgsp1_rep	CDS	1375188	1375652	.	-	0	Parent=Os11t0129800-01
Chr11	irgsp1_rep	CDS	1373974	1374276	.	-	0	Parent=Os11t0129800-01
Chr11	irgsp1_rep	CDS	1373753	1373890	.	-	0	Parent=Os11t0129800-01
Chr11	irgsp1_rep	CDS	1373412	1373645	.	-	0	Parent=Os11t0129800-01
Chr11	irgsp1_rep	CDS	1372656	1373045	.	-	0	Parent=Os11t0129800-01
Chr11	irgsp1_rep	three_prime_UTR	1372531	1372655	.	-	.	Parent=Os11t0129800-01
Chr11	irgsp1_rep	mRNA	1381813	1386291	.	-	.	ID=Os11t0130100-01;Name=Os11t0130100-01;Locus_id=Os11g0130100;Note=Conserved hypothetical protein.;Transcript_evidence=AK063914 (DDBJ%2C Best hit);ORF_evidence=Q2RB13 (UniProt);NIAS_FLcDNA=001-123-A12;TENOR=Os11t0130100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	1386259	1386291	.	-	0	Parent=Os11t0130100-01
Chr11	irgsp1_rep	CDS	1385964	1386137	.	-	0	Parent=Os11t0130100-01
Chr11	irgsp1_rep	CDS	1385697	1385853	.	-	0	Parent=Os11t0130100-01
Chr11	irgsp1_rep	CDS	1384323	1384462	.	-	2	Parent=Os11t0130100-01
Chr11	irgsp1_rep	CDS	1384189	1384224	.	-	0	Parent=Os11t0130100-01
Chr11	irgsp1_rep	CDS	1382287	1383159	.	-	0	Parent=Os11t0130100-01
Chr11	irgsp1_rep	three_prime_UTR	1381813	1382286	.	-	.	Parent=Os11t0130100-01
Chr11	irgsp1_rep	mRNA	1390586	1391712	.	-	.	ID=Os11t0130200-01;Name=Os11t0130200-01;Locus_id=Os11g0130200;Note=Protein of unknown function DUF309 family protein.;Transcript_evidence=AK059458 (DDBJ%2C Best hit);ORF_evidence=B8BIV2 (UniProt);InterPro=Protein of unknown function DUF309 (IPR005500),TTHA0068-like domain (IPR023203);NIAS_FLcDNA=001-028-C06;Expression=AK059458;TENOR=Os11t0130200-01;KEGG=Os11t0130200-01
Chr11	irgsp1_rep	five_prime_UTR	1391695	1391712	.	-	.	Parent=Os11t0130200-01
Chr11	irgsp1_rep	CDS	1391260	1391694	.	-	0	Parent=Os11t0130200-01
Chr11	irgsp1_rep	CDS	1390765	1391157	.	-	0	Parent=Os11t0130200-01
Chr11	irgsp1_rep	three_prime_UTR	1390586	1390764	.	-	.	Parent=Os11t0130200-01
Chr11	irgsp1_rep	mRNA	1392723	1394974	.	+	.	ID=Os11t0130300-01;Name=Os11t0130300-01;Locus_id=Os11g0130300;Note=Nse1 non-SMC component of SMC5-6 complex family protein.;Transcript_evidence=AK059597 (DDBJ%2C Best hit);ORF_evidence=Q2QYA0 (UniProt);InterPro=Nse1 non-SMC component of SMC5-6 complex (IPR011513),Zinc finger%2C RING-like (IPR014857);NIAS_FLcDNA=001-030-E02;Expression=AK059597;TENOR=Os11t0130300-01;KEGG=Os11t0130300-01
Chr11	irgsp1_rep	five_prime_UTR	1392723	1392947	.	+	.	Parent=Os11t0130300-01
Chr11	irgsp1_rep	CDS	1392948	1393065	.	+	0	Parent=Os11t0130300-01
Chr11	irgsp1_rep	CDS	1393414	1393610	.	+	2	Parent=Os11t0130300-01
Chr11	irgsp1_rep	CDS	1393691	1393771	.	+	0	Parent=Os11t0130300-01
Chr11	irgsp1_rep	CDS	1393903	1394136	.	+	0	Parent=Os11t0130300-01
Chr11	irgsp1_rep	CDS	1394250	1394327	.	+	0	Parent=Os11t0130300-01
Chr11	irgsp1_rep	CDS	1394401	1394709	.	+	0	Parent=Os11t0130300-01
Chr11	irgsp1_rep	three_prime_UTR	1394710	1394974	.	+	.	Parent=Os11t0130300-01
Chr11	irgsp1_rep	mRNA	1392814	1394979	.	+	.	ID=Os11t0130300-02;Name=Os11t0130300-02;Locus_id=Os11g0130300;Note=Nse1 non-SMC component of SMC5-6 complex family protein.;Transcript_evidence=AK101224 (DDBJ%2C Best hit);ORF_evidence=Q2QYA0 (UniProt);InterPro=Nse1 non-SMC component of SMC5-6 complex (IPR011513),Zinc finger%2C RING-like (IPR014857);NIAS_FLcDNA=J033031D09;Expression=AK101224;TENOR=Os11t0130300-02;KEGG=Os11t0130300-02
Chr11	irgsp1_rep	five_prime_UTR	1392814	1392947	.	+	.	Parent=Os11t0130300-02
Chr11	irgsp1_rep	CDS	1392948	1393065	.	+	0	Parent=Os11t0130300-02
Chr11	irgsp1_rep	CDS	1393414	1393610	.	+	2	Parent=Os11t0130300-02
Chr11	irgsp1_rep	CDS	1393691	1393771	.	+	0	Parent=Os11t0130300-02
Chr11	irgsp1_rep	CDS	1393903	1394136	.	+	0	Parent=Os11t0130300-02
Chr11	irgsp1_rep	CDS	1394250	1394327	.	+	0	Parent=Os11t0130300-02
Chr11	irgsp1_rep	CDS	1394401	1394709	.	+	0	Parent=Os11t0130300-02
Chr11	irgsp1_rep	three_prime_UTR	1394710	1394979	.	+	.	Parent=Os11t0130300-02
Chr11	irgsp1_rep	mRNA	1397105	1398352	.	-	.	ID=Os11t0130400-01;Name=Os11t0130400-01;Locus_id=Os11g0130400;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK243509 (DDBJ%2C Best hit);ORF_evidence=NP_001065651.2 (RefSeq);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=J100075B21;TENOR=Os11t0130400-01;KEGG=Os11t0130400-01
Chr11	irgsp1_rep	five_prime_UTR	1398278	1398352	.	-	.	Parent=Os11t0130400-01
Chr11	irgsp1_rep	CDS	1397447	1398277	.	-	0	Parent=Os11t0130400-01
Chr11	irgsp1_rep	three_prime_UTR	1397105	1397446	.	-	.	Parent=Os11t0130400-01
Chr11	irgsp1_rep	mRNA	1403232	1405136	.	-	.	ID=Os11t0130500-01;Name=Os11t0130500-01;Locus_id=Os11g0130500;Oryzabase Gene Symbol Synonym(s)=OsFbox564%2C Os_F0113;Oryzabase Gene Name Synonym(s)=F-box protein 564;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK241516 (DDBJ%2C Best hit);ORF_evidence=Q2RB09 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J065169E14;Oryzabase=17333;TENOR=Os11t0130500-01;KEGG=Os11t0130500-01
Chr11	irgsp1_rep	five_prime_UTR	1404946	1405136	.	-	.	Parent=Os11t0130500-01
Chr11	irgsp1_rep	CDS	1404905	1404945	.	-	0	Parent=Os11t0130500-01
Chr11	irgsp1_rep	CDS	1404258	1404414	.	-	1	Parent=Os11t0130500-01
Chr11	irgsp1_rep	CDS	1403623	1404159	.	-	0	Parent=Os11t0130500-01
Chr11	irgsp1_rep	three_prime_UTR	1403232	1403622	.	-	.	Parent=Os11t0130500-01
Chr11	irgsp1_rep	mRNA	1405320	1407004	.	+	.	ID=Os11t0130600-01;Name=Os11t0130600-01;Locus_id=Os11g0130600;Note=Conserved hypothetical protein.;Transcript_evidence=AK066342 (DDBJ%2C Best hit);ORF_evidence=NP_001066054.1 (RefSeq);NIAS_FLcDNA=J013068I02;TENOR=Os11t0130600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	1405320	1405443	.	+	.	Parent=Os11t0130600-01
Chr11	irgsp1_rep	CDS	1405444	1405658	.	+	0	Parent=Os11t0130600-01
Chr11	irgsp1_rep	CDS	1406163	1406295	.	+	1	Parent=Os11t0130600-01
Chr11	irgsp1_rep	three_prime_UTR	1406296	1407004	.	+	.	Parent=Os11t0130600-01
Chr11	irgsp1_rep	mRNA	1408945	1409547	.	+	.	ID=Os11t0130700-00;Name=Os11t0130700-00;Locus_id=Os11g0130700;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G976 (UniProt);TENOR=Os11t0130700-00
Chr11	irgsp1_rep	CDS	1408945	1409547	.	+	0	Parent=Os11t0130700-00
Chr11	irgsp1_rep	mRNA	1410921	1415618	.	-	.	ID=Os11t0130800-01;Name=Os11t0130800-01;Locus_id=Os11g0130800;Note=Similar to Ulp1 protease family%2C C-terminal catalytic domain containing protein%2C expressed.;Transcript_evidence=AK242802 (DDBJ%2C Best hit);ORF_evidence=Q2QY95 (UniProt);NIAS_FLcDNA=J090059L09;TENOR=Os11t0130800-01;KEGG=Os11t0130800-01
Chr11	irgsp1_rep	five_prime_UTR	1415355	1415618	.	-	.	Parent=Os11t0130800-01
Chr11	irgsp1_rep	five_prime_UTR	1413405	1413444	.	-	.	Parent=Os11t0130800-01
Chr11	irgsp1_rep	CDS	1412061	1413404	.	-	0	Parent=Os11t0130800-01
Chr11	irgsp1_rep	three_prime_UTR	1411666	1412060	.	-	.	Parent=Os11t0130800-01
Chr11	irgsp1_rep	three_prime_UTR	1410921	1411582	.	-	.	Parent=Os11t0130800-01
Chr11	irgsp1_rep	mRNA	1416803	1420569	.	-	.	ID=Os11t0130900-00;Name=Os11t0130900-00;Locus_id=Os11g0130900;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=tplb0036i24 (Wheat FLcDNA);ORF_evidence=Q2RB05 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os11t0130900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	1420550	1420569	.	-	.	Parent=Os11t0130900-00
Chr11	irgsp1_rep	CDS	1419717	1420549	.	-	0	Parent=Os11t0130900-00
Chr11	irgsp1_rep	CDS	1416803	1418873	.	-	1	Parent=Os11t0130900-00
Chr11	irgsp1_rep	mRNA	1425890	1426608	.	+	.	ID=Os11t0131100-00;Name=Os11t0131100-00;Locus_id=Os11g0131100;Oryzabase Gene Symbol Synonym(s)=OsVQ37;Oryzabase Gene Name Synonym(s)=VQ motif-containing protein 37;Note=VQ domain containing protein.;Transcript_evidence=CT835703 (DDBJ%2C Best hit);ORF_evidence=Q2RB04 (UniProt);InterPro=VQ (IPR008889);Oryzabase=13653;TENOR=Os11t0131100-00;KEGG=Os11t0131100-00
Chr11	irgsp1_rep	five_prime_UTR	1425890	1425949	.	+	.	Parent=Os11t0131100-00
Chr11	irgsp1_rep	CDS	1425950	1426495	.	+	0	Parent=Os11t0131100-00
Chr11	irgsp1_rep	three_prime_UTR	1426496	1426608	.	+	.	Parent=Os11t0131100-00
Chr11	irgsp1_rep	mRNA	1429209	1432687	.	-	.	ID=Os11t0131200-01;Name=Os11t0131200-01;Locus_id=Os11g0131200;Note=Similar to Mpv17/PMP22 family protein%2C expressed.;Transcript_evidence=AK240867 (DDBJ%2C Best hit);ORF_evidence=Q2RB03 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Mpv17/PMP22 (IPR007248);NIAS_FLcDNA=J065024D18;TENOR=Os11t0131200-01;KEGG=Os11t0131200-01
Chr11	irgsp1_rep	five_prime_UTR	1432656	1432687	.	-	.	Parent=Os11t0131200-01
Chr11	irgsp1_rep	CDS	1432366	1432655	.	-	0	Parent=Os11t0131200-01
Chr11	irgsp1_rep	CDS	1432147	1432234	.	-	1	Parent=Os11t0131200-01
Chr11	irgsp1_rep	CDS	1431376	1431470	.	-	0	Parent=Os11t0131200-01
Chr11	irgsp1_rep	CDS	1431215	1431287	.	-	1	Parent=Os11t0131200-01
Chr11	irgsp1_rep	CDS	1430994	1431086	.	-	0	Parent=Os11t0131200-01
Chr11	irgsp1_rep	CDS	1430694	1430780	.	-	0	Parent=Os11t0131200-01
Chr11	irgsp1_rep	CDS	1430477	1430557	.	-	0	Parent=Os11t0131200-01
Chr11	irgsp1_rep	three_prime_UTR	1429209	1429754	.	-	.	Parent=Os11t0131200-01
Chr11	irgsp1_rep	mRNA	1433750	1435595	.	+	.	ID=Os11t0131300-00;Name=Os11t0131300-00;Locus_id=Os11g0131300;Oryzabase Gene Symbol Synonym(s)=OsFbox565%2C Os_F0027;Oryzabase Gene Name Synonym(s)=F-box protein 565;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2RB02 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated domain%2C type 3 (IPR013187),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17334;TENOR=Os11t0131300-00;KEGG=Os11t0131300-00
Chr11	irgsp1_rep	CDS	1433750	1434883	.	+	0	Parent=Os11t0131300-00
Chr11	irgsp1_rep	CDS	1435551	1435595	.	+	0	Parent=Os11t0131300-00
Chr11	irgsp1_rep	mRNA	1435898	1437761	.	+	.	ID=Os11t0131400-00;Name=Os11t0131400-00;Locus_id=Os11g0131400;Note=Hypothetical conserved gene.;Transcript_evidence=AK109466 (DDBJ%2C Secondary hit);ORF_evidence=Q2RB01 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);Expression=AK109466;TENOR=Os11t0131400-00;KEGG=Os11t0131400-00
Chr11	irgsp1_rep	CDS	1435898	1435958	.	+	0	Parent=Os11t0131400-00
Chr11	irgsp1_rep	CDS	1435965	1436647	.	+	2	Parent=Os11t0131400-00
Chr11	irgsp1_rep	CDS	1436702	1437703	.	+	0	Parent=Os11t0131400-00
Chr11	irgsp1_rep	three_prime_UTR	1437704	1437761	.	+	.	Parent=Os11t0131400-00
Chr11	irgsp1_rep	mRNA	1436671	1437719	.	-	.	ID=Os11t0131500-00;Name=Os11t0131500-00;Locus_id=Os11g0131500;Note=Hypothetical protein.;Transcript_evidence=BT085496 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0131500-00
Chr11	irgsp1_rep	five_prime_UTR	1437203	1437719	.	-	.	Parent=Os11t0131500-00
Chr11	irgsp1_rep	CDS	1436671	1437202	.	-	0	Parent=Os11t0131500-00
Chr11	irgsp1_rep	mRNA	1439580	1441577	.	-	.	ID=Os11t0131600-00;Name=Os11t0131600-00;Locus_id=Os11g0131600;Oryzabase Gene Symbol Synonym(s)=OsSET40%2C SDG733%2C OsSUVH11;Oryzabase Gene Name Synonym(s)=SET protein 40%2C SUVH Histone Methyltransferase 11;Note=Similar to YDG/SRA domain containing protein.;Transcript_evidence=BT055690 (DDBJ);ORF_evidence=Q2RB00 (UniProt);GO=Biological Process: histone lysine methylation (GO:0034968),Cellular Component: nucleus (GO:0005634),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: histone-lysine N-methyltransferase activity (GO:0018024),Molecular Function: histone binding (GO:0042393);InterPro=SET domain (IPR001214),SRA-YDG (IPR003105),Pre-SET zinc-binding sub-group (IPR003606),Post-SET domain (IPR003616),Pre-SET domain (IPR007728);Oryzabase=13403;TENOR=Os11t0131600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	1439583	1441577	.	-	0	Parent=Os11t0131600-00
Chr11	irgsp1_rep	three_prime_UTR	1439580	1439582	.	-	.	Parent=Os11t0131600-00
Chr11	irgsp1_rep	mRNA	1442730	1444660	.	-	.	ID=Os11t0131700-01;Name=Os11t0131700-01;Locus_id=Os11g0131700;Note=Zinc finger%2C Tim10/DDP-type domain containing protein.;Transcript_evidence=AK243327 (DDBJ%2C Best hit);ORF_evidence=B6SLJ2 (UniProt);GO=Biological Process: protein targeting to mitochondrion (GO:0006626),Biological Process: protein import into mitochondrial inner membrane (GO:0045039),Cellular Component: mitochondrial intermembrane space protein transporter complex (GO:0042719);InterPro=Mitochondrial inner membrane translocase complex%2C Tim8/9/10/13-zinc finger-like (IPR004217);NIAS_FLcDNA=J100058A16;TENOR=Os11t0131700-01;KEGG=Os11t0131700-01
Chr11	irgsp1_rep	five_prime_UTR	1444584	1444660	.	-	.	Parent=Os11t0131700-01
Chr11	irgsp1_rep	CDS	1444536	1444583	.	-	0	Parent=Os11t0131700-01
Chr11	irgsp1_rep	CDS	1442965	1443153	.	-	0	Parent=Os11t0131700-01
Chr11	irgsp1_rep	three_prime_UTR	1442730	1442964	.	-	.	Parent=Os11t0131700-01
Chr11	irgsp1_rep	mRNA	1445067	1449198	.	+	.	ID=Os11t0131800-01;Name=Os11t0131800-01;Locus_id=Os11g0131800;Note=Similar to H0114G12.9 protein.;Transcript_evidence=AK288048 (DDBJ%2C Best hit);ORF_evidence=A8B8B1 (UniProt);NIAS_FLcDNA=J075146M20;TENOR=Os11t0131800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	1445067	1448493	.	+	.	Parent=Os11t0131800-01
Chr11	irgsp1_rep	CDS	1448494	1448640	.	+	0	Parent=Os11t0131800-01
Chr11	irgsp1_rep	three_prime_UTR	1448641	1449198	.	+	.	Parent=Os11t0131800-01
Chr11	irgsp1_rep	mRNA	1453786	1459790	.	+	.	ID=Os11t0131900-01;Name=Os11t0131900-01;Locus_id=Os11g0131900;Oryzabase Gene Symbol Synonym(s)=OsARAF3;Oryzabase Gene Name Synonym(s)=Arabinofuranosidase 3;Note=Similar to Arabinoxylan arabinofuranohydrolase isoenzyme AXAH-II.;Transcript_evidence=AK065240 (DDBJ%2C Best hit);ORF_evidence=Q9ATV7 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: L-arabinose metabolic process (GO:0046373),Molecular Function: catalytic activity (GO:0003824),Molecular Function: cation binding (GO:0043169),Molecular Function: alpha-N-arabinofuranosidase activity (GO:0046556);InterPro=Alpha-L-arabinofuranosidase%2C C-terminal (IPR010720),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J013002I08;Oryzabase=15037;Expression=AK065240;TENOR=Os11t0131900-01;KEGG=Os11t0131900-01
Chr11	irgsp1_rep	five_prime_UTR	1453786	1453899	.	+	.	Parent=Os11t0131900-01
Chr11	irgsp1_rep	five_prime_UTR	1454319	1454353	.	+	.	Parent=Os11t0131900-01
Chr11	irgsp1_rep	CDS	1454354	1454536	.	+	0	Parent=Os11t0131900-01
Chr11	irgsp1_rep	CDS	1454716	1454770	.	+	0	Parent=Os11t0131900-01
Chr11	irgsp1_rep	CDS	1455134	1455330	.	+	2	Parent=Os11t0131900-01
Chr11	irgsp1_rep	CDS	1455569	1455690	.	+	0	Parent=Os11t0131900-01
Chr11	irgsp1_rep	CDS	1455778	1455925	.	+	1	Parent=Os11t0131900-01
Chr11	irgsp1_rep	CDS	1456074	1456143	.	+	0	Parent=Os11t0131900-01
Chr11	irgsp1_rep	CDS	1456246	1456391	.	+	2	Parent=Os11t0131900-01
Chr11	irgsp1_rep	CDS	1456505	1456550	.	+	0	Parent=Os11t0131900-01
Chr11	irgsp1_rep	CDS	1456629	1456681	.	+	2	Parent=Os11t0131900-01
Chr11	irgsp1_rep	CDS	1457226	1457370	.	+	0	Parent=Os11t0131900-01
Chr11	irgsp1_rep	CDS	1457987	1458105	.	+	2	Parent=Os11t0131900-01
Chr11	irgsp1_rep	CDS	1458213	1458284	.	+	0	Parent=Os11t0131900-01
Chr11	irgsp1_rep	CDS	1458591	1458694	.	+	0	Parent=Os11t0131900-01
Chr11	irgsp1_rep	CDS	1458836	1458892	.	+	1	Parent=Os11t0131900-01
Chr11	irgsp1_rep	CDS	1458979	1459171	.	+	1	Parent=Os11t0131900-01
Chr11	irgsp1_rep	CDS	1459254	1459397	.	+	0	Parent=Os11t0131900-01
Chr11	irgsp1_rep	CDS	1459510	1459632	.	+	0	Parent=Os11t0131900-01
Chr11	irgsp1_rep	three_prime_UTR	1459633	1459790	.	+	.	Parent=Os11t0131900-01
Chr11	irgsp1_rep	mRNA	1458599	1459945	.	+	.	ID=Os11t0131900-02;Name=Os11t0131900-02;Locus_id=Os11g0131900;Oryzabase Gene Symbol Synonym(s)=OsARAF3;Oryzabase Gene Name Synonym(s)=Arabinofuranosidase 3;Note=Similar to alpha-N-arabinofuranosidase A.;Transcript_evidence=AK061612 (DDBJ%2C Best hit);ORF_evidence=B6T9B9 (UniProt);GO=Biological Process: L-arabinose metabolic process (GO:0046373),Molecular Function: alpha-N-arabinofuranosidase activity (GO:0046556);InterPro=Alpha-L-arabinofuranosidase%2C C-terminal (IPR010720),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-033-B06;Oryzabase=15037;Expression=AK061612;TENOR=Os11t0131900-02;KEGG=Os11t0131900-02
Chr11	irgsp1_rep	five_prime_UTR	1458599	1458599	.	+	.	Parent=Os11t0131900-02
Chr11	irgsp1_rep	CDS	1458600	1458694	.	+	0	Parent=Os11t0131900-02
Chr11	irgsp1_rep	CDS	1458836	1458892	.	+	1	Parent=Os11t0131900-02
Chr11	irgsp1_rep	CDS	1458979	1459171	.	+	1	Parent=Os11t0131900-02
Chr11	irgsp1_rep	CDS	1459254	1459397	.	+	0	Parent=Os11t0131900-02
Chr11	irgsp1_rep	CDS	1459510	1459632	.	+	0	Parent=Os11t0131900-02
Chr11	irgsp1_rep	three_prime_UTR	1459633	1459945	.	+	.	Parent=Os11t0131900-02
Chr11	irgsp1_rep	mRNA	1462162	1467581	.	+	.	ID=Os11t0132000-01;Name=Os11t0132000-01;Locus_id=Os11g0132000;Note=Similar to Arabinoxylan arabinofuranohydrolase isoenzyme AXAH-II.;Transcript_evidence=AK099668 (DDBJ%2C Best hit);ORF_evidence=Q9ATV7 (UniProt);NIAS_FLcDNA=J013067L10;TENOR=Os11t0132000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	1462162	1462596	.	+	.	Parent=Os11t0132000-01
Chr11	irgsp1_rep	CDS	1462597	1462645	.	+	0	Parent=Os11t0132000-01
Chr11	irgsp1_rep	CDS	1462756	1462946	.	+	2	Parent=Os11t0132000-01
Chr11	irgsp1_rep	CDS	1463306	1463329	.	+	0	Parent=Os11t0132000-01
Chr11	irgsp1_rep	three_prime_UTR	1463330	1463420	.	+	.	Parent=Os11t0132000-01
Chr11	irgsp1_rep	three_prime_UTR	1463550	1463697	.	+	.	Parent=Os11t0132000-01
Chr11	irgsp1_rep	three_prime_UTR	1464073	1464142	.	+	.	Parent=Os11t0132000-01
Chr11	irgsp1_rep	three_prime_UTR	1464218	1464363	.	+	.	Parent=Os11t0132000-01
Chr11	irgsp1_rep	three_prime_UTR	1464464	1464498	.	+	.	Parent=Os11t0132000-01
Chr11	irgsp1_rep	three_prime_UTR	1464598	1464966	.	+	.	Parent=Os11t0132000-01
Chr11	irgsp1_rep	three_prime_UTR	1465568	1465680	.	+	.	Parent=Os11t0132000-01
Chr11	irgsp1_rep	three_prime_UTR	1466215	1466271	.	+	.	Parent=Os11t0132000-01
Chr11	irgsp1_rep	three_prime_UTR	1466361	1466553	.	+	.	Parent=Os11t0132000-01
Chr11	irgsp1_rep	three_prime_UTR	1466759	1466902	.	+	.	Parent=Os11t0132000-01
Chr11	irgsp1_rep	three_prime_UTR	1467286	1467581	.	+	.	Parent=Os11t0132000-01
Chr11	irgsp1_rep	mRNA	1468877	1469400	.	-	.	ID=Os11t0132100-00;Name=Os11t0132100-00;Locus_id=Os11g0132100;Note=Similar to Pectinesterase inhibitor domain containing protein.;Transcript_evidence=DQ245602 (DDBJ);ORF_evidence=Q2RAZ5 (UniProt);GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);TENOR=Os11t0132100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	1468903	1469400	.	-	0	Parent=Os11t0132100-00
Chr11	irgsp1_rep	three_prime_UTR	1468877	1468902	.	-	.	Parent=Os11t0132100-00
Chr11	irgsp1_rep	mRNA	1472913	1473988	.	-	.	ID=Os11t0132400-01;Name=Os11t0132400-01;Locus_id=Os11g0132400;Note=Uncharacterised protein family UPF0414 domain containing protein.;Transcript_evidence=AK059074 (DDBJ%2C Best hit);ORF_evidence=NP_001176772.1 (RefSeq);InterPro=Protein of unknown function DUF872%2C transmembrane (IPR008590);NIAS_FLcDNA=001-022-A01;Expression=AK059074;TENOR=Os11t0132400-01;KEGG=Os11t0132400-01
Chr11	irgsp1_rep	five_prime_UTR	1473987	1473988	.	-	.	Parent=Os11t0132400-01
Chr11	irgsp1_rep	CDS	1473902	1473986	.	-	0	Parent=Os11t0132400-01
Chr11	irgsp1_rep	CDS	1473414	1473493	.	-	2	Parent=Os11t0132400-01
Chr11	irgsp1_rep	three_prime_UTR	1472913	1473413	.	-	.	Parent=Os11t0132400-01
Chr11	irgsp1_rep	mRNA	1476041	1477556	.	-	.	ID=Os11t0132501-00;Name=Os11t0132501-00;Locus_id=Os11g0132501;Note=Hypothetical gene.;Transcript_evidence=AK120086 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;Expression=AK120086;TENOR=Os11t0132501-00;KEGG=Os11t0132501-00
Chr11	irgsp1_rep	five_prime_UTR	1477367	1477556	.	-	.	Parent=Os11t0132501-00
Chr11	irgsp1_rep	five_prime_UTR	1477273	1477356	.	-	.	Parent=Os11t0132501-00
Chr11	irgsp1_rep	five_prime_UTR	1476445	1477233	.	-	.	Parent=Os11t0132501-00
Chr11	irgsp1_rep	CDS	1476223	1476444	.	-	0	Parent=Os11t0132501-00
Chr11	irgsp1_rep	three_prime_UTR	1476041	1476222	.	-	.	Parent=Os11t0132501-00
Chr11	irgsp1_rep	mRNA	1484073	1491751	.	+	.	ID=Os11t0132600-01;Name=Os11t0132600-01;Locus_id=Os11g0132600;Oryzabase Gene Symbol Synonym(s)=OsWD40-181;Note=Similar to Arabinoxylan arabinofuranohydrolase isoenzyme AXAH-II.;Transcript_evidence=AK102526 (DDBJ%2C Best hit);ORF_evidence=Q9ATV8 (UniProt);GO=Biological Process: L-arabinose metabolic process (GO:0046373),Molecular Function: alpha-N-arabinofuranosidase activity (GO:0046556);InterPro=Alpha-L-arabinofuranosidase%2C C-terminal (IPR010720),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J033096C04;Oryzabase=10862;Expression=AK102526;TENOR=Os11t0132600-01;KEGG=Os11t0132600-01
Chr11	irgsp1_rep	five_prime_UTR	1484073	1484267	.	+	.	Parent=Os11t0132600-01
Chr11	irgsp1_rep	five_prime_UTR	1484683	1484701	.	+	.	Parent=Os11t0132600-01
Chr11	irgsp1_rep	CDS	1484702	1484875	.	+	0	Parent=Os11t0132600-01
Chr11	irgsp1_rep	CDS	1485351	1485405	.	+	0	Parent=Os11t0132600-01
Chr11	irgsp1_rep	CDS	1486056	1486252	.	+	2	Parent=Os11t0132600-01
Chr11	irgsp1_rep	CDS	1486608	1486729	.	+	0	Parent=Os11t0132600-01
Chr11	irgsp1_rep	CDS	1486814	1486961	.	+	1	Parent=Os11t0132600-01
Chr11	irgsp1_rep	CDS	1487392	1487461	.	+	0	Parent=Os11t0132600-01
Chr11	irgsp1_rep	CDS	1488045	1488190	.	+	2	Parent=Os11t0132600-01
Chr11	irgsp1_rep	CDS	1488287	1488332	.	+	0	Parent=Os11t0132600-01
Chr11	irgsp1_rep	CDS	1488433	1488485	.	+	2	Parent=Os11t0132600-01
Chr11	irgsp1_rep	CDS	1488641	1488785	.	+	0	Parent=Os11t0132600-01
Chr11	irgsp1_rep	CDS	1489261	1489379	.	+	2	Parent=Os11t0132600-01
Chr11	irgsp1_rep	CDS	1489495	1489566	.	+	0	Parent=Os11t0132600-01
Chr11	irgsp1_rep	CDS	1489996	1490102	.	+	0	Parent=Os11t0132600-01
Chr11	irgsp1_rep	CDS	1490415	1490471	.	+	1	Parent=Os11t0132600-01
Chr11	irgsp1_rep	CDS	1490563	1490755	.	+	1	Parent=Os11t0132600-01
Chr11	irgsp1_rep	CDS	1490944	1491087	.	+	0	Parent=Os11t0132600-01
Chr11	irgsp1_rep	CDS	1491406	1491531	.	+	0	Parent=Os11t0132600-01
Chr11	irgsp1_rep	three_prime_UTR	1491532	1491751	.	+	.	Parent=Os11t0132600-01
Chr11	irgsp1_rep	mRNA	1488077	1491751	.	+	.	ID=Os11t0132600-02;Name=Os11t0132600-02;Locus_id=Os11g0132600;Oryzabase Gene Symbol Synonym(s)=OsWD40-181;Note=Similar to Arabinoxylan arabinofuranohydrolase isoenzyme AXAH-I.;Transcript_evidence=AK062199 (DDBJ%2C Best hit);ORF_evidence=Q9ATV8 (UniProt);GO=Biological Process: L-arabinose metabolic process (GO:0046373),Molecular Function: alpha-N-arabinofuranosidase activity (GO:0046556);InterPro=Alpha-L-arabinofuranosidase%2C C-terminal (IPR010720),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-046-G03;Oryzabase=10862;Expression=AK062199;TENOR=Os11t0132600-02;KEGG=Os11t0132600-02
Chr11	irgsp1_rep	CDS	1488077	1488190	.	+	0	Parent=Os11t0132600-02
Chr11	irgsp1_rep	CDS	1488287	1488332	.	+	0	Parent=Os11t0132600-02
Chr11	irgsp1_rep	CDS	1488433	1488485	.	+	2	Parent=Os11t0132600-02
Chr11	irgsp1_rep	CDS	1488641	1488785	.	+	0	Parent=Os11t0132600-02
Chr11	irgsp1_rep	CDS	1489261	1489379	.	+	2	Parent=Os11t0132600-02
Chr11	irgsp1_rep	CDS	1489495	1489566	.	+	0	Parent=Os11t0132600-02
Chr11	irgsp1_rep	CDS	1489996	1490102	.	+	0	Parent=Os11t0132600-02
Chr11	irgsp1_rep	CDS	1490415	1490471	.	+	1	Parent=Os11t0132600-02
Chr11	irgsp1_rep	CDS	1490563	1490755	.	+	1	Parent=Os11t0132600-02
Chr11	irgsp1_rep	CDS	1490944	1491087	.	+	0	Parent=Os11t0132600-02
Chr11	irgsp1_rep	CDS	1491406	1491531	.	+	0	Parent=Os11t0132600-02
Chr11	irgsp1_rep	three_prime_UTR	1491532	1491751	.	+	.	Parent=Os11t0132600-02
Chr11	irgsp1_rep	mRNA	1491987	1496335	.	-	.	ID=Os11t0132700-01;Name=Os11t0132700-01;Locus_id=Os11g0132700;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK103286 (DDBJ%2C Best hit);ORF_evidence=B7F8R8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J033124M23;Expression=AK103286;TENOR=Os11t0132700-01;KEGG=Os11t0132700-01
Chr11	irgsp1_rep	five_prime_UTR	1496267	1496335	.	-	.	Parent=Os11t0132700-01
Chr11	irgsp1_rep	CDS	1496209	1496266	.	-	0	Parent=Os11t0132700-01
Chr11	irgsp1_rep	CDS	1496081	1496136	.	-	2	Parent=Os11t0132700-01
Chr11	irgsp1_rep	CDS	1495796	1495960	.	-	0	Parent=Os11t0132700-01
Chr11	irgsp1_rep	CDS	1495484	1495598	.	-	0	Parent=Os11t0132700-01
Chr11	irgsp1_rep	CDS	1495225	1495324	.	-	2	Parent=Os11t0132700-01
Chr11	irgsp1_rep	CDS	1494876	1495061	.	-	1	Parent=Os11t0132700-01
Chr11	irgsp1_rep	CDS	1494651	1494706	.	-	1	Parent=Os11t0132700-01
Chr11	irgsp1_rep	CDS	1494476	1494563	.	-	2	Parent=Os11t0132700-01
Chr11	irgsp1_rep	CDS	1494325	1494400	.	-	1	Parent=Os11t0132700-01
Chr11	irgsp1_rep	CDS	1493522	1493621	.	-	0	Parent=Os11t0132700-01
Chr11	irgsp1_rep	CDS	1493366	1493417	.	-	2	Parent=Os11t0132700-01
Chr11	irgsp1_rep	CDS	1492789	1492926	.	-	1	Parent=Os11t0132700-01
Chr11	irgsp1_rep	CDS	1492600	1492687	.	-	1	Parent=Os11t0132700-01
Chr11	irgsp1_rep	CDS	1492461	1492514	.	-	0	Parent=Os11t0132700-01
Chr11	irgsp1_rep	three_prime_UTR	1492447	1492460	.	-	.	Parent=Os11t0132700-01
Chr11	irgsp1_rep	three_prime_UTR	1491987	1492356	.	-	.	Parent=Os11t0132700-01
Chr11	irgsp1_rep	mRNA	1509884	1512419	.	+	.	ID=Os11t0133001-01;Name=Os11t0133001-01;Locus_id=Os11g0133001;Note=Similar to Ser/Thr protein kinase (Fragment).;Transcript_evidence=AK241883 (DDBJ%2C Best hit);ORF_evidence=Q2RAY8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Epidermal growth factor-like%2C type 3 (IPR000742),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),Epidermal growth factor-like (IPR006210),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),S-receptor-like serine/threonine-protein kinase (IPR024171);NIAS_FLcDNA=J065219C09;TENOR=Os11t0133001-01;KEGG=Os11t0133001-01
Chr11	irgsp1_rep	five_prime_UTR	1509884	1509884	.	+	.	Parent=Os11t0133001-01
Chr11	irgsp1_rep	CDS	1509885	1512269	.	+	0	Parent=Os11t0133001-01
Chr11	irgsp1_rep	three_prime_UTR	1512270	1512419	.	+	.	Parent=Os11t0133001-01
Chr11	irgsp1_rep	mRNA	1522291	1524288	.	-	.	ID=Os11t0133100-00;Name=Os11t0133100-00;Locus_id=Os11g0133100;Note=Similar to D-mannose binding lectin family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QY68 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Epidermal growth factor-like%2C type 3 (IPR000742),S-locus glycoprotein (IPR000858),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),PAN-1 domain (IPR003014),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os11t0133100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	1522291	1524288	.	-	0	Parent=Os11t0133100-00
Chr11	irgsp1_rep	mRNA	1534948	1535784	.	-	.	ID=Os11t0133200-00;Name=Os11t0133200-00;Locus_id=Os11g0133200;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2RAY5 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);TENOR=Os11t0133200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	1534948	1535784	.	-	0	Parent=Os11t0133200-00
Chr11	irgsp1_rep	mRNA	1538544	1541254	.	+	.	ID=Os11t0133300-01;Name=Os11t0133300-01;Locus_id=Os11g0133300;Note=Similar to D-mannose binding lectin family protein%2C expressed.;Transcript_evidence=AK121819 (DDBJ%2C Best hit),AK102340 (DDBJ%2C Best hit);ORF_evidence=Q2QY68 (UniProt);GO=Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein binding (GO:0005515),Molecular Function: sugar binding (GO:0005529);InterPro=Epidermal growth factor-like%2C type 3 (IPR000742),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),PAN-1 domain (IPR003014),Epidermal growth factor-like (IPR006210);NIAS_FLcDNA=J033099B16,J033091B04;TENOR=Os11t0133300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	1538544	1538565	.	+	.	Parent=Os11t0133300-01
Chr11	irgsp1_rep	CDS	1538566	1540278	.	+	0	Parent=Os11t0133300-01
Chr11	irgsp1_rep	three_prime_UTR	1540279	1541254	.	+	.	Parent=Os11t0133300-01
Chr11	irgsp1_rep	mRNA	1545969	1548581	.	-	.	ID=Os11t0133500-00;Name=Os11t0133500-00;Locus_id=Os11g0133500;CGSNL Gene Symbol=RLCK310;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 310;Oryzabase Gene Symbol Synonym(s)=OsRLCK310%2C LecRK%2C OsLecRK;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 310%2C lectin receptor protein kinase;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK335688 (DDBJ);ORF_evidence=Q2QY66 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Epidermal growth factor-like%2C type 3 (IPR000742),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18983;TENOR=Os11t0133500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	1546092	1548581	.	-	0	Parent=Os11t0133500-00
Chr11	irgsp1_rep	three_prime_UTR	1545969	1546091	.	-	.	Parent=Os11t0133500-00
Chr11	irgsp1_rep	mRNA	1552041	1554077	.	+	.	ID=Os11t0133600-01;Name=Os11t0133600-01;Locus_id=Os11g0133600;Note=Similar to Heterogeneous nuclear ribonucleoprotein H3 (hnRNP H3) (hnRNP 2H9). Splice isoform 6.;Transcript_evidence=AK058340 (DDBJ%2C Best hit);ORF_evidence=NP_001066073.2 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-014-D07;Expression=AK058340;TENOR=Os11t0133600-01;KEGG=Os11t0133600-01
Chr11	irgsp1_rep	five_prime_UTR	1552041	1552354	.	+	.	Parent=Os11t0133600-01
Chr11	irgsp1_rep	CDS	1552355	1552371	.	+	0	Parent=Os11t0133600-01
Chr11	irgsp1_rep	CDS	1553008	1553887	.	+	1	Parent=Os11t0133600-01
Chr11	irgsp1_rep	three_prime_UTR	1553888	1554077	.	+	.	Parent=Os11t0133600-01
Chr11	irgsp1_rep	mRNA	1556485	1557036	.	-	.	ID=Os11t0133700-01;Name=Os11t0133700-01;Locus_id=Os11g0133700;Note=Similar to Glucosamine-fructose-6-phosphate aminotransferase%2C isomerizing family protein%2C expressed.;Transcript_evidence=AK058784 (DDBJ%2C Best hit);ORF_evidence=Q2RAY0 (UniProt);NIAS_FLcDNA=001-002-D09;TENOR=Os11t0133700-01
Chr11	irgsp1_rep	five_prime_UTR	1557036	1557036	.	-	.	Parent=Os11t0133700-01
Chr11	irgsp1_rep	CDS	1556916	1557035	.	-	0	Parent=Os11t0133700-01
Chr11	irgsp1_rep	CDS	1556485	1556611	.	-	0	Parent=Os11t0133700-01
Chr11	irgsp1_rep	mRNA	1562115	1565026	.	+	.	ID=Os11t0133800-00;Name=Os11t0133800-00;Locus_id=Os11g0133800;Note=Similar to zinc finger (DHHC type) family protein.;Transcript_evidence=AK358270 (DDBJ);ORF_evidence=NP_191252.1 (RefSeq);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C DHHC-type%2C palmitoyltransferase (IPR001594);TENOR=Os11t0133800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	1562115	1562195	.	+	.	Parent=Os11t0133800-00
Chr11	irgsp1_rep	CDS	1562196	1562291	.	+	0	Parent=Os11t0133800-00
Chr11	irgsp1_rep	CDS	1562392	1562571	.	+	0	Parent=Os11t0133800-00
Chr11	irgsp1_rep	CDS	1562810	1563121	.	+	0	Parent=Os11t0133800-00
Chr11	irgsp1_rep	CDS	1563924	1564157	.	+	0	Parent=Os11t0133800-00
Chr11	irgsp1_rep	CDS	1564351	1564938	.	+	0	Parent=Os11t0133800-00
Chr11	irgsp1_rep	three_prime_UTR	1564939	1565026	.	+	.	Parent=Os11t0133800-00
Chr11	irgsp1_rep	mRNA	1564325	1564862	.	-	.	ID=Os11t0133850-00;Name=Os11t0133850-00;Locus_id=Os11g0133850;Note=Hypothetical gene.;Transcript_evidence=EU946073 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0133850-00;KEGG=Os11t0133850-00
Chr11	irgsp1_rep	five_prime_UTR	1564739	1564862	.	-	.	Parent=Os11t0133850-00
Chr11	irgsp1_rep	CDS	1564439	1564738	.	-	0	Parent=Os11t0133850-00
Chr11	irgsp1_rep	three_prime_UTR	1564325	1564438	.	-	.	Parent=Os11t0133850-00
Chr11	irgsp1_rep	mRNA	1565346	1566450	.	-	.	ID=Os11t0133900-00;Name=Os11t0133900-00;Locus_id=Os11g0133900;Note=Conserved hypothetical protein.;Transcript_evidence=AK360391 (DDBJ);ORF_evidence=NP_001065673.2 (RefSeq);TENOR=Os11t0133900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	1566016	1566450	.	-	0	Parent=Os11t0133900-00
Chr11	irgsp1_rep	CDS	1565549	1565658	.	-	0	Parent=Os11t0133900-00
Chr11	irgsp1_rep	CDS	1565415	1565496	.	-	1	Parent=Os11t0133900-00
Chr11	irgsp1_rep	three_prime_UTR	1565346	1565414	.	-	.	Parent=Os11t0133900-00
Chr11	irgsp1_rep	mRNA	1572300	1584345	.	-	.	ID=Os11t0134100-00;Name=Os11t0134100-00;Locus_id=Os11g0134100;Note=Similar to LG27/30-like.;Transcript_evidence=EU975234 (DDBJ);ORF_evidence=Q2QY56 (UniProt);InterPro=Rhamnogalacturonate lyase (IPR010325);TENOR=Os11t0134100-00;KEGG=Os11t0134100-00
Chr11	irgsp1_rep	CDS	1584212	1584345	.	-	0	Parent=Os11t0134100-00
Chr11	irgsp1_rep	CDS	1582850	1582909	.	-	1	Parent=Os11t0134100-00
Chr11	irgsp1_rep	CDS	1581182	1581298	.	-	1	Parent=Os11t0134100-00
Chr11	irgsp1_rep	CDS	1574547	1574666	.	-	1	Parent=Os11t0134100-00
Chr11	irgsp1_rep	CDS	1574305	1574446	.	-	1	Parent=Os11t0134100-00
Chr11	irgsp1_rep	CDS	1574012	1574188	.	-	0	Parent=Os11t0134100-00
Chr11	irgsp1_rep	CDS	1573642	1573908	.	-	0	Parent=Os11t0134100-00
Chr11	irgsp1_rep	three_prime_UTR	1573608	1573641	.	-	.	Parent=Os11t0134100-00
Chr11	irgsp1_rep	three_prime_UTR	1573147	1573375	.	-	.	Parent=Os11t0134100-00
Chr11	irgsp1_rep	three_prime_UTR	1572773	1573043	.	-	.	Parent=Os11t0134100-00
Chr11	irgsp1_rep	three_prime_UTR	1572300	1572675	.	-	.	Parent=Os11t0134100-00
Chr11	irgsp1_rep	mRNA	1572426	1573143	.	+	.	ID=Os11t0134166-00;Name=Os11t0134166-00;Locus_id=Os11g0134166;Note=Hypothetical gene.;Transcript_evidence=CT835687 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os11t0134166-00;KEGG=Os11t0134166-00
Chr11	irgsp1_rep	five_prime_UTR	1572426	1572652	.	+	.	Parent=Os11t0134166-00
Chr11	irgsp1_rep	five_prime_UTR	1572791	1572805	.	+	.	Parent=Os11t0134166-00
Chr11	irgsp1_rep	CDS	1572806	1573051	.	+	0	Parent=Os11t0134166-00
Chr11	irgsp1_rep	three_prime_UTR	1573052	1573143	.	+	.	Parent=Os11t0134166-00
Chr11	irgsp1_rep	mRNA	1603702	1604322	.	+	.	ID=Os11t0134232-00;Name=Os11t0134232-00;Locus_id=Os11g0134232;Note=Non-protein coding transcript.;Transcript_evidence=CT835707 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os11t0134232-00
Chr11	irgsp1_rep	exon	1603702	1604322	.	+	.	Parent=Os11t0134232-00
Chr11	irgsp1_rep	mRNA	1605182	1609130	.	+	.	ID=Os11t0134300-01;Name=Os11t0134300-01;Locus_id=Os11g0134300;CGSNL Gene Symbol=CIPK33;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 33;Oryzabase Gene Symbol Synonym(s)=OsCIPK33;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 33;Note=Similar to Serine/threonine kinase.;Transcript_evidence=AK112043 (DDBJ%2C Best hit);ORF_evidence=Q2RAX3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),NAF domain (IPR004041),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),NAF/FISL domain (IPR018451),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-046-B09;Oryzabase=18177;Expression=AK112043;TENOR=Os11t0134300-01;KEGG=Os11t0134300-01 (EC:2.7.11.11)
Chr11	irgsp1_rep	five_prime_UTR	1605182	1605182	.	+	.	Parent=Os11t0134300-01
Chr11	irgsp1_rep	CDS	1605183	1605206	.	+	0	Parent=Os11t0134300-01
Chr11	irgsp1_rep	CDS	1605462	1605524	.	+	0	Parent=Os11t0134300-01
Chr11	irgsp1_rep	CDS	1605764	1605835	.	+	0	Parent=Os11t0134300-01
Chr11	irgsp1_rep	CDS	1605963	1606070	.	+	0	Parent=Os11t0134300-01
Chr11	irgsp1_rep	CDS	1606177	1606257	.	+	0	Parent=Os11t0134300-01
Chr11	irgsp1_rep	CDS	1606684	1606737	.	+	0	Parent=Os11t0134300-01
Chr11	irgsp1_rep	CDS	1606849	1606974	.	+	0	Parent=Os11t0134300-01
Chr11	irgsp1_rep	CDS	1607057	1607146	.	+	0	Parent=Os11t0134300-01
Chr11	irgsp1_rep	CDS	1607454	1607576	.	+	0	Parent=Os11t0134300-01
Chr11	irgsp1_rep	CDS	1607682	1607789	.	+	0	Parent=Os11t0134300-01
Chr11	irgsp1_rep	CDS	1608131	1608292	.	+	0	Parent=Os11t0134300-01
Chr11	irgsp1_rep	CDS	1608374	1608430	.	+	0	Parent=Os11t0134300-01
Chr11	irgsp1_rep	CDS	1608511	1608585	.	+	0	Parent=Os11t0134300-01
Chr11	irgsp1_rep	CDS	1608760	1608834	.	+	0	Parent=Os11t0134300-01
Chr11	irgsp1_rep	three_prime_UTR	1608835	1609130	.	+	.	Parent=Os11t0134300-01
Chr11	irgsp1_rep	mRNA	1609280	1610131	.	-	.	ID=Os11t0134400-00;Name=Os11t0134400-00;Locus_id=Os11g0134400;CGSNL Gene Symbol=CML2;CGSNL Gene Name=CALMODULIN-LIKE PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsCML2;Oryzabase Gene Name Synonym(s)=calmodulin-like protein 2;Note=Calmodulin-like protein 3.;Transcript_evidence=Q0IQB6 (UniProt);ORF_evidence=Q0IQB6 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);Oryzabase=10505;TENOR=Os11t0134400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	1610059	1610131	.	-	0	Parent=Os11t0134400-00
Chr11	irgsp1_rep	CDS	1609607	1609976	.	-	2	Parent=Os11t0134400-00
Chr11	irgsp1_rep	CDS	1609280	1609388	.	-	1	Parent=Os11t0134400-00
Chr11	irgsp1_rep	mRNA	1610977	1615242	.	-	.	ID=Os11t0134500-01;Name=Os11t0134500-01;Locus_id=Os11g0134500;Oryzabase Gene Symbol Synonym(s)=OsWD40-182;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK111725 (DDBJ%2C Best hit);ORF_evidence=Q1HFN6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),Histone-binding protein RBBP4 (IPR022052);NIAS_FLcDNA=J023031P19;Oryzabase=10863;Expression=AK111725;TENOR=Os11t0134500-01;KEGG=Os11t0134500-01
Chr11	irgsp1_rep	five_prime_UTR	1615159	1615242	.	-	.	Parent=Os11t0134500-01
Chr11	irgsp1_rep	CDS	1615114	1615158	.	-	0	Parent=Os11t0134500-01
Chr11	irgsp1_rep	CDS	1614948	1614992	.	-	0	Parent=Os11t0134500-01
Chr11	irgsp1_rep	CDS	1614648	1614754	.	-	0	Parent=Os11t0134500-01
Chr11	irgsp1_rep	CDS	1614464	1614542	.	-	1	Parent=Os11t0134500-01
Chr11	irgsp1_rep	CDS	1614017	1614190	.	-	0	Parent=Os11t0134500-01
Chr11	irgsp1_rep	CDS	1613800	1613898	.	-	0	Parent=Os11t0134500-01
Chr11	irgsp1_rep	CDS	1612981	1613149	.	-	0	Parent=Os11t0134500-01
Chr11	irgsp1_rep	CDS	1612745	1612848	.	-	2	Parent=Os11t0134500-01
Chr11	irgsp1_rep	CDS	1612516	1612655	.	-	0	Parent=Os11t0134500-01
Chr11	irgsp1_rep	CDS	1612359	1612431	.	-	1	Parent=Os11t0134500-01
Chr11	irgsp1_rep	CDS	1611769	1611881	.	-	0	Parent=Os11t0134500-01
Chr11	irgsp1_rep	CDS	1611528	1611645	.	-	1	Parent=Os11t0134500-01
Chr11	irgsp1_rep	CDS	1611224	1611355	.	-	0	Parent=Os11t0134500-01
Chr11	irgsp1_rep	three_prime_UTR	1610977	1611223	.	-	.	Parent=Os11t0134500-01
Chr11	irgsp1_rep	mRNA	1615784	1617060	.	+	.	ID=Os11t0134600-01;Name=Os11t0134600-01;Locus_id=Os11g0134600;Note=Hypothetical conserved gene.;Transcript_evidence=AK288037 (DDBJ%2C Best hit);ORF_evidence=NP_001065678.1 (RefSeq);NIAS_FLcDNA=J075143H01;TENOR=Os11t0134600-01;KEGG=Os11t0134600-01
Chr11	irgsp1_rep	CDS	1615784	1615916	.	+	0	Parent=Os11t0134600-01
Chr11	irgsp1_rep	CDS	1616564	1616952	.	+	2	Parent=Os11t0134600-01
Chr11	irgsp1_rep	three_prime_UTR	1616953	1617060	.	+	.	Parent=Os11t0134600-01
Chr11	irgsp1_rep	mRNA	1616990	1618300	.	-	.	ID=Os11t0134700-01;Name=Os11t0134700-01;Locus_id=Os11g0134700;CGSNL Gene Symbol=MC7;CGSNL Gene Name=METACASPASE 7;Oryzabase Gene Symbol Synonym(s)=OsMC7;Oryzabase Gene Name Synonym(s)=Metacaspase 7;Note=Similar to Metacaspase 7 (Metacaspase 4).;Transcript_evidence=AK064966 (DDBJ%2C Best hit),AK104210 (DDBJ%2C Best hit),AK104380 (DDBJ%2C Best hit);ORF_evidence=Q2HUG6 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197);InterPro=Peptidase C14%2C caspase catalytic (IPR011600);NIAS_FLcDNA=J013001B03,006-305-C11,001-035-H03;Oryzabase=18159;TENOR=Os11t0134700-01
Chr11	irgsp1_rep	five_prime_UTR	1618202	1618300	.	-	.	Parent=Os11t0134700-01
Chr11	irgsp1_rep	CDS	1617176	1618201	.	-	0	Parent=Os11t0134700-01
Chr11	irgsp1_rep	three_prime_UTR	1616990	1617175	.	-	.	Parent=Os11t0134700-01
Chr11	irgsp1_rep	mRNA	1618494	1623978	.	-	.	ID=Os11t0134900-01;Name=Os11t0134900-01;Locus_id=Os11g0134900;CGSNL Gene Symbol=TOM1;CGSNL Gene Name=TRANSPORTER OF MUGINEIC ACID 1;Oryzabase Gene Symbol Synonym(s)=OsTOM1%2C ZIFL4%2C OsZIFL4;Oryzabase Gene Name Synonym(s)=Transporter of mugineic acids 1%2C zinc-induced facilitator-like 4;Note=Similar to Major facilitator superfamily antiporter.;Transcript_evidence=AK069533 (DDBJ%2C Best hit);ORF_evidence=Q8H6D5 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J023019M18;Oryzabase=10274;Expression=AK069533;TENOR=Os11t0134900-01;KEGG=Os11t0134900-01
Chr11	irgsp1_rep	five_prime_UTR	1623943	1623978	.	-	.	Parent=Os11t0134900-01
Chr11	irgsp1_rep	CDS	1623795	1623942	.	-	0	Parent=Os11t0134900-01
Chr11	irgsp1_rep	CDS	1623583	1623623	.	-	2	Parent=Os11t0134900-01
Chr11	irgsp1_rep	CDS	1623398	1623458	.	-	0	Parent=Os11t0134900-01
Chr11	irgsp1_rep	CDS	1622590	1622692	.	-	2	Parent=Os11t0134900-01
Chr11	irgsp1_rep	CDS	1622408	1622510	.	-	1	Parent=Os11t0134900-01
Chr11	irgsp1_rep	CDS	1622256	1622309	.	-	0	Parent=Os11t0134900-01
Chr11	irgsp1_rep	CDS	1622111	1622173	.	-	0	Parent=Os11t0134900-01
Chr11	irgsp1_rep	CDS	1621975	1622024	.	-	0	Parent=Os11t0134900-01
Chr11	irgsp1_rep	CDS	1621803	1621878	.	-	1	Parent=Os11t0134900-01
Chr11	irgsp1_rep	CDS	1621122	1621295	.	-	0	Parent=Os11t0134900-01
Chr11	irgsp1_rep	CDS	1620921	1621008	.	-	0	Parent=Os11t0134900-01
Chr11	irgsp1_rep	CDS	1620357	1620442	.	-	2	Parent=Os11t0134900-01
Chr11	irgsp1_rep	CDS	1620160	1620267	.	-	0	Parent=Os11t0134900-01
Chr11	irgsp1_rep	CDS	1619589	1619633	.	-	0	Parent=Os11t0134900-01
Chr11	irgsp1_rep	CDS	1619422	1619510	.	-	0	Parent=Os11t0134900-01
Chr11	irgsp1_rep	CDS	1619127	1619170	.	-	1	Parent=Os11t0134900-01
Chr11	irgsp1_rep	CDS	1618911	1618999	.	-	2	Parent=Os11t0134900-01
Chr11	irgsp1_rep	three_prime_UTR	1618494	1618910	.	-	.	Parent=Os11t0134900-01
Chr11	irgsp1_rep	mRNA	1618885	1623931	.	+	.	ID=Os11t0134950-00;Name=Os11t0134950-00;Locus_id=Os11g0134950;Note=Hypothetical protein.;Transcript_evidence=tplb0023l07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0134950-00
Chr11	irgsp1_rep	five_prime_UTR	1618885	1619047	.	+	.	Parent=Os11t0134950-00
Chr11	irgsp1_rep	five_prime_UTR	1619426	1619531	.	+	.	Parent=Os11t0134950-00
Chr11	irgsp1_rep	five_prime_UTR	1620144	1620269	.	+	.	Parent=Os11t0134950-00
Chr11	irgsp1_rep	five_prime_UTR	1620831	1621008	.	+	.	Parent=Os11t0134950-00
Chr11	irgsp1_rep	five_prime_UTR	1621122	1621298	.	+	.	Parent=Os11t0134950-00
Chr11	irgsp1_rep	five_prime_UTR	1621809	1621880	.	+	.	Parent=Os11t0134950-00
Chr11	irgsp1_rep	five_prime_UTR	1622051	1622423	.	+	.	Parent=Os11t0134950-00
Chr11	irgsp1_rep	CDS	1622424	1622495	.	+	0	Parent=Os11t0134950-00
Chr11	irgsp1_rep	CDS	1622575	1622739	.	+	0	Parent=Os11t0134950-00
Chr11	irgsp1_rep	three_prime_UTR	1622740	1622772	.	+	.	Parent=Os11t0134950-00
Chr11	irgsp1_rep	three_prime_UTR	1623785	1623931	.	+	.	Parent=Os11t0134950-00
Chr11	irgsp1_rep	mRNA	1626486	1631411	.	-	.	ID=Os11t0135000-01;Name=Os11t0135000-01;Locus_id=Os11g0135000;RAP-DB Gene Symbol Synonym(s)=TOM2;RAP-DB Gene Name Synonym(s)=transporter of mugineic acid family phytosiderophores 2;CGSNL Gene Symbol=ZIFL5;CGSNL Gene Name=ZINC-INDUCED FACILITATOR-LIKE 5;Oryzabase Gene Symbol Synonym(s)=OsZIFL5%2C OsTOM2%2C TOM2;Oryzabase Gene Name Synonym(s)=zinc-induced facilitator-like 5%2C Transporter of mugineic acids 2;Note=Efflux transporter of phytosiderophores%2C Metal transport;Transcript_evidence=AK121911;ORF_evidence=Q2RAW4;GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral component of plasma membrane (GO:0005887);InterPro=MFS transporter superfamily (IPR036259),Major facilitator superfamily (IPR011701),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J033105P18;Manual Curation=February 13%2C 2020;Literature_PMID=26432636;Oryzabase=9474;Expression=AK121911;TENOR=Os11t0135000-01;KEGG=Os11t0135000-01;Subcellular location=cell membrane (GO:0005886)
Chr11	irgsp1_rep	five_prime_UTR	1631227	1631411	.	-	.	Parent=Os11t0135000-01
Chr11	irgsp1_rep	CDS	1631094	1631226	.	-	0	Parent=Os11t0135000-01
Chr11	irgsp1_rep	CDS	1630905	1630945	.	-	2	Parent=Os11t0135000-01
Chr11	irgsp1_rep	CDS	1630757	1630817	.	-	0	Parent=Os11t0135000-01
Chr11	irgsp1_rep	CDS	1630345	1630447	.	-	2	Parent=Os11t0135000-01
Chr11	irgsp1_rep	CDS	1630117	1630219	.	-	1	Parent=Os11t0135000-01
Chr11	irgsp1_rep	CDS	1629920	1629973	.	-	0	Parent=Os11t0135000-01
Chr11	irgsp1_rep	CDS	1629754	1629816	.	-	0	Parent=Os11t0135000-01
Chr11	irgsp1_rep	CDS	1629596	1629645	.	-	0	Parent=Os11t0135000-01
Chr11	irgsp1_rep	CDS	1629437	1629512	.	-	1	Parent=Os11t0135000-01
Chr11	irgsp1_rep	CDS	1628994	1629164	.	-	0	Parent=Os11t0135000-01
Chr11	irgsp1_rep	CDS	1628589	1628676	.	-	0	Parent=Os11t0135000-01
Chr11	irgsp1_rep	CDS	1628369	1628454	.	-	2	Parent=Os11t0135000-01
Chr11	irgsp1_rep	CDS	1628116	1628223	.	-	0	Parent=Os11t0135000-01
Chr11	irgsp1_rep	CDS	1627705	1627749	.	-	0	Parent=Os11t0135000-01
Chr11	irgsp1_rep	CDS	1627509	1627597	.	-	0	Parent=Os11t0135000-01
Chr11	irgsp1_rep	CDS	1627001	1627044	.	-	1	Parent=Os11t0135000-01
Chr11	irgsp1_rep	CDS	1626739	1626836	.	-	2	Parent=Os11t0135000-01
Chr11	irgsp1_rep	three_prime_UTR	1626486	1626738	.	-	.	Parent=Os11t0135000-01
Chr11	irgsp1_rep	mRNA	1626506	1630253	.	-	.	ID=Os11t0135000-02;Name=Os11t0135000-02;Locus_id=Os11g0135000;CGSNL Gene Symbol=ZIFL5;CGSNL Gene Name=ZINC-INDUCED FACILITATOR-LIKE 5;Oryzabase Gene Symbol Synonym(s)=OsZIFL5%2C OsTOM2%2C TOM2;Oryzabase Gene Name Synonym(s)=zinc-induced facilitator-like 5%2C Transporter of mugineic acids 2;Note=Similar to Major facilitator superfamily antiporter.;Transcript_evidence=AK066565 (DDBJ%2C Best hit);ORF_evidence=Q8H6D5 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J013072J11;Oryzabase=9474;Expression=AK066565;TENOR=Os11t0135000-02;KEGG=Os11t0135000-02
Chr11	irgsp1_rep	five_prime_UTR	1630252	1630253	.	-	.	Parent=Os11t0135000-02
Chr11	irgsp1_rep	CDS	1630117	1630251	.	-	0	Parent=Os11t0135000-02
Chr11	irgsp1_rep	CDS	1629920	1629973	.	-	0	Parent=Os11t0135000-02
Chr11	irgsp1_rep	CDS	1629754	1629816	.	-	0	Parent=Os11t0135000-02
Chr11	irgsp1_rep	CDS	1629596	1629645	.	-	0	Parent=Os11t0135000-02
Chr11	irgsp1_rep	CDS	1629437	1629512	.	-	1	Parent=Os11t0135000-02
Chr11	irgsp1_rep	CDS	1628994	1629164	.	-	0	Parent=Os11t0135000-02
Chr11	irgsp1_rep	CDS	1628589	1628676	.	-	0	Parent=Os11t0135000-02
Chr11	irgsp1_rep	CDS	1628369	1628454	.	-	2	Parent=Os11t0135000-02
Chr11	irgsp1_rep	CDS	1628116	1628223	.	-	0	Parent=Os11t0135000-02
Chr11	irgsp1_rep	CDS	1627705	1627749	.	-	0	Parent=Os11t0135000-02
Chr11	irgsp1_rep	CDS	1627509	1627597	.	-	0	Parent=Os11t0135000-02
Chr11	irgsp1_rep	CDS	1627001	1627044	.	-	1	Parent=Os11t0135000-02
Chr11	irgsp1_rep	CDS	1626739	1626836	.	-	2	Parent=Os11t0135000-02
Chr11	irgsp1_rep	three_prime_UTR	1626506	1626738	.	-	.	Parent=Os11t0135000-02
Chr11	irgsp1_rep	mRNA	1626714	1631237	.	+	.	ID=Os11t0135150-00;Name=Os11t0135150-00;Locus_id=Os11g0135150;Note=Non-protein coding transcript.;Transcript_evidence=tplb0023l07 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os11t0135150-00
Chr11	irgsp1_rep	exon	1626714	1626873	.	+	.	Parent=Os11t0135150-00
Chr11	irgsp1_rep	exon	1627507	1627599	.	+	.	Parent=Os11t0135150-00
Chr11	irgsp1_rep	exon	1628068	1628219	.	+	.	Parent=Os11t0135150-00
Chr11	irgsp1_rep	exon	1628361	1628452	.	+	.	Parent=Os11t0135150-00
Chr11	irgsp1_rep	exon	1628587	1628676	.	+	.	Parent=Os11t0135150-00
Chr11	irgsp1_rep	exon	1628994	1629154	.	+	.	Parent=Os11t0135150-00
Chr11	irgsp1_rep	exon	1629427	1629502	.	+	.	Parent=Os11t0135150-00
Chr11	irgsp1_rep	exon	1629587	1629649	.	+	.	Parent=Os11t0135150-00
Chr11	irgsp1_rep	exon	1629758	1630204	.	+	.	Parent=Os11t0135150-00
Chr11	irgsp1_rep	exon	1630329	1630445	.	+	.	Parent=Os11t0135150-00
Chr11	irgsp1_rep	exon	1630755	1630819	.	+	.	Parent=Os11t0135150-00
Chr11	irgsp1_rep	exon	1631048	1631237	.	+	.	Parent=Os11t0135150-00
Chr11	irgsp1_rep	mRNA	1641003	1646052	.	-	.	ID=Os11t0135300-00;Name=Os11t0135300-00;Locus_id=Os11g0135300;CGSNL Gene Symbol=ZIFL6;CGSNL Gene Name=ZINC-INDUCED FACILITATOR-LIKE 6;Oryzabase Gene Symbol Synonym(s)=OsZIFL6;Oryzabase Gene Name Synonym(s)=zinc-induced facilitator-like 6;Note=Similar to Major facilitator superfamily antiporter.;Transcript_evidence=BT070123 (DDBJ);ORF_evidence=B6TZM4 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: plasma membrane (GO:0005886),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215);InterPro=Tetracycline resistance protein%2C TetA/multidrug resistance protein MdtG (IPR001958),Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);Oryzabase=9475;TENOR=Os11t0135300-00;KEGG=Os11t0135300-00
Chr11	irgsp1_rep	CDS	1645857	1646052	.	-	0	Parent=Os11t0135300-00
Chr11	irgsp1_rep	CDS	1644987	1645027	.	-	2	Parent=Os11t0135300-00
Chr11	irgsp1_rep	CDS	1644450	1644510	.	-	0	Parent=Os11t0135300-00
Chr11	irgsp1_rep	CDS	1644232	1644334	.	-	2	Parent=Os11t0135300-00
Chr11	irgsp1_rep	CDS	1644051	1644153	.	-	1	Parent=Os11t0135300-00
Chr11	irgsp1_rep	CDS	1643909	1643962	.	-	0	Parent=Os11t0135300-00
Chr11	irgsp1_rep	CDS	1643749	1643811	.	-	0	Parent=Os11t0135300-00
Chr11	irgsp1_rep	CDS	1643617	1643666	.	-	0	Parent=Os11t0135300-00
Chr11	irgsp1_rep	CDS	1643439	1643514	.	-	1	Parent=Os11t0135300-00
Chr11	irgsp1_rep	CDS	1642930	1643106	.	-	0	Parent=Os11t0135300-00
Chr11	irgsp1_rep	CDS	1642636	1642723	.	-	0	Parent=Os11t0135300-00
Chr11	irgsp1_rep	CDS	1642410	1642495	.	-	2	Parent=Os11t0135300-00
Chr11	irgsp1_rep	CDS	1642203	1642310	.	-	0	Parent=Os11t0135300-00
Chr11	irgsp1_rep	CDS	1641833	1641877	.	-	0	Parent=Os11t0135300-00
Chr11	irgsp1_rep	CDS	1641654	1641742	.	-	0	Parent=Os11t0135300-00
Chr11	irgsp1_rep	CDS	1641502	1641545	.	-	1	Parent=Os11t0135300-00
Chr11	irgsp1_rep	CDS	1641192	1641298	.	-	2	Parent=Os11t0135300-00
Chr11	irgsp1_rep	three_prime_UTR	1641003	1641191	.	-	.	Parent=Os11t0135300-00
Chr11	irgsp1_rep	mRNA	1641654	1646003	.	+	.	ID=Os11t0135350-00;Name=Os11t0135350-00;Locus_id=Os11g0135350;Note=Non-protein coding transcript.;Transcript_evidence=tplb0023l07 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os11t0135350-00
Chr11	irgsp1_rep	exon	1641654	1641760	.	+	.	Parent=Os11t0135350-00
Chr11	irgsp1_rep	exon	1642181	1642348	.	+	.	Parent=Os11t0135350-00
Chr11	irgsp1_rep	exon	1642572	1642719	.	+	.	Parent=Os11t0135350-00
Chr11	irgsp1_rep	exon	1642917	1643105	.	+	.	Parent=Os11t0135350-00
Chr11	irgsp1_rep	exon	1643436	1643552	.	+	.	Parent=Os11t0135350-00
Chr11	irgsp1_rep	exon	1643746	1644158	.	+	.	Parent=Os11t0135350-00
Chr11	irgsp1_rep	exon	1644236	1644323	.	+	.	Parent=Os11t0135350-00
Chr11	irgsp1_rep	exon	1644441	1644562	.	+	.	Parent=Os11t0135350-00
Chr11	irgsp1_rep	exon	1645863	1646003	.	+	.	Parent=Os11t0135350-00
Chr11	irgsp1_rep	mRNA	1646439	1648943	.	-	.	ID=Os11t0135400-00;Name=Os11t0135400-00;Locus_id=Os11g0135400;Oryzabase Gene Symbol Synonym(s)=ARP;Oryzabase Gene Name Synonym(s)=60S acidic ribosomal protein;Note=60S acidic ribosomal protein P0.;Transcript_evidence=BT041468 (DDBJ);ORF_evidence=NP_001105482.1 (RefSeq);GO=Biological Process: translational elongation (GO:0006414),Biological Process: ribosome biogenesis (GO:0042254),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L10/acidic P0 (IPR001790),Ribosomal protein 60S (IPR001813);Oryzabase=21702;TENOR=Os11t0135400-00;KEGG=Os11t0135400-00
Chr11	irgsp1_rep	five_prime_UTR	1648854	1648943	.	-	.	Parent=Os11t0135400-00
Chr11	irgsp1_rep	CDS	1648596	1648853	.	-	0	Parent=Os11t0135400-00
Chr11	irgsp1_rep	CDS	1648425	1648493	.	-	0	Parent=Os11t0135400-00
Chr11	irgsp1_rep	CDS	1647649	1647747	.	-	0	Parent=Os11t0135400-00
Chr11	irgsp1_rep	CDS	1647178	1647570	.	-	0	Parent=Os11t0135400-00
Chr11	irgsp1_rep	CDS	1646641	1646784	.	-	0	Parent=Os11t0135400-00
Chr11	irgsp1_rep	three_prime_UTR	1646439	1646640	.	-	.	Parent=Os11t0135400-00
Chr11	irgsp1_rep	mRNA	1657888	1665113	.	-	.	ID=Os11t0135900-01;Name=Os11t0135900-01;Locus_id=Os11g0135900;RAP-DB Gene Symbol Synonym(s)=TOM3;RAP-DB Gene Name Synonym(s)=transporter of mugineic acid family phytosiderophores 3;CGSNL Gene Symbol=ZIFL7;CGSNL Gene Name=ZINC-INDUCED FACILITATOR-LIKE 7;Oryzabase Gene Symbol Synonym(s)=OsZIFL7%2C OsTOM3%2C TOM3;Oryzabase Gene Name Synonym(s)=zinc-induced facilitator-like 7%2C TRANSPORTER OF MUGINEIC ACID 3;Note=Homolog of transporter of mugineic acid family phytosiderophores 1 (TOM1);Transcript_evidence=AK064297;ORF_evidence=Q2RAV7;GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral component of plasma membrane (GO:0005887);InterPro=MFS transporter superfamily (IPR036259),Major facilitator superfamily (IPR011701),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=002-107-A04;Manual Curation=February 13%2C 2020;Literature_PMID=26432636;Oryzabase=9476;Expression=AK064297;TENOR=Os11t0135900-01;KEGG=Os11t0135900-01
Chr11	irgsp1_rep	five_prime_UTR	1664775	1665113	.	-	.	Parent=Os11t0135900-01
Chr11	irgsp1_rep	CDS	1664618	1664774	.	-	0	Parent=Os11t0135900-01
Chr11	irgsp1_rep	CDS	1662885	1662925	.	-	2	Parent=Os11t0135900-01
Chr11	irgsp1_rep	CDS	1662529	1662589	.	-	0	Parent=Os11t0135900-01
Chr11	irgsp1_rep	CDS	1662341	1662443	.	-	2	Parent=Os11t0135900-01
Chr11	irgsp1_rep	CDS	1662106	1662208	.	-	1	Parent=Os11t0135900-01
Chr11	irgsp1_rep	CDS	1661937	1661990	.	-	0	Parent=Os11t0135900-01
Chr11	irgsp1_rep	CDS	1661796	1661858	.	-	0	Parent=Os11t0135900-01
Chr11	irgsp1_rep	CDS	1661665	1661714	.	-	0	Parent=Os11t0135900-01
Chr11	irgsp1_rep	CDS	1661504	1661579	.	-	1	Parent=Os11t0135900-01
Chr11	irgsp1_rep	CDS	1660897	1661097	.	-	0	Parent=Os11t0135900-01
Chr11	irgsp1_rep	CDS	1660266	1660353	.	-	0	Parent=Os11t0135900-01
Chr11	irgsp1_rep	CDS	1659778	1659863	.	-	2	Parent=Os11t0135900-01
Chr11	irgsp1_rep	CDS	1659587	1659694	.	-	0	Parent=Os11t0135900-01
Chr11	irgsp1_rep	CDS	1659194	1659238	.	-	0	Parent=Os11t0135900-01
Chr11	irgsp1_rep	CDS	1659023	1659111	.	-	0	Parent=Os11t0135900-01
Chr11	irgsp1_rep	CDS	1658517	1658560	.	-	1	Parent=Os11t0135900-01
Chr11	irgsp1_rep	CDS	1658262	1658365	.	-	2	Parent=Os11t0135900-01
Chr11	irgsp1_rep	three_prime_UTR	1657888	1658261	.	-	.	Parent=Os11t0135900-01
Chr11	irgsp1_rep	mRNA	1657867	1665086	.	-	.	ID=Os11t0135900-02;Name=Os11t0135900-02;Locus_id=Os11g0135900;CGSNL Gene Symbol=ZIFL7;CGSNL Gene Name=ZINC-INDUCED FACILITATOR-LIKE 7;Oryzabase Gene Symbol Synonym(s)=OsZIFL7%2C OsTOM3%2C TOM3;Oryzabase Gene Name Synonym(s)=zinc-induced facilitator-like 7%2C TRANSPORTER OF MUGINEIC ACID 3;Note=Similar to carbohydrate transporter/ sugar porter/ transporter.;Transcript_evidence=AK072447 (DDBJ%2C Best hit);ORF_evidence=NP_001148164.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J023109G16;Oryzabase=9476;Expression=AK072447;TENOR=Os11t0135900-02;KEGG=Os11t0135900-02
Chr11	irgsp1_rep	five_prime_UTR	1664775	1665086	.	-	.	Parent=Os11t0135900-02
Chr11	irgsp1_rep	CDS	1664618	1664774	.	-	0	Parent=Os11t0135900-02
Chr11	irgsp1_rep	CDS	1662885	1662925	.	-	2	Parent=Os11t0135900-02
Chr11	irgsp1_rep	CDS	1662529	1662589	.	-	0	Parent=Os11t0135900-02
Chr11	irgsp1_rep	CDS	1662341	1662443	.	-	2	Parent=Os11t0135900-02
Chr11	irgsp1_rep	CDS	1662106	1662208	.	-	1	Parent=Os11t0135900-02
Chr11	irgsp1_rep	CDS	1661937	1661990	.	-	0	Parent=Os11t0135900-02
Chr11	irgsp1_rep	CDS	1661796	1661858	.	-	0	Parent=Os11t0135900-02
Chr11	irgsp1_rep	CDS	1661665	1661714	.	-	0	Parent=Os11t0135900-02
Chr11	irgsp1_rep	CDS	1661504	1661579	.	-	1	Parent=Os11t0135900-02
Chr11	irgsp1_rep	CDS	1661028	1661045	.	-	0	Parent=Os11t0135900-02
Chr11	irgsp1_rep	three_prime_UTR	1660266	1661027	.	-	.	Parent=Os11t0135900-02
Chr11	irgsp1_rep	three_prime_UTR	1659778	1659863	.	-	.	Parent=Os11t0135900-02
Chr11	irgsp1_rep	three_prime_UTR	1659194	1659694	.	-	.	Parent=Os11t0135900-02
Chr11	irgsp1_rep	three_prime_UTR	1659023	1659111	.	-	.	Parent=Os11t0135900-02
Chr11	irgsp1_rep	three_prime_UTR	1658517	1658560	.	-	.	Parent=Os11t0135900-02
Chr11	irgsp1_rep	three_prime_UTR	1657867	1658365	.	-	.	Parent=Os11t0135900-02
Chr11	irgsp1_rep	mRNA	1658278	1662670	.	+	.	ID=Os11t0136101-00;Name=Os11t0136101-00;Locus_id=Os11g0136101;Note=Hypothetical protein.;Transcript_evidence=tplb0023l07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0136101-00
Chr11	irgsp1_rep	five_prime_UTR	1658278	1658367	.	+	.	Parent=Os11t0136101-00
Chr11	irgsp1_rep	five_prime_UTR	1658974	1659120	.	+	.	Parent=Os11t0136101-00
Chr11	irgsp1_rep	five_prime_UTR	1659555	1659715	.	+	.	Parent=Os11t0136101-00
Chr11	irgsp1_rep	five_prime_UTR	1660196	1660298	.	+	.	Parent=Os11t0136101-00
Chr11	irgsp1_rep	CDS	1660299	1660358	.	+	0	Parent=Os11t0136101-00
Chr11	irgsp1_rep	CDS	1660908	1661087	.	+	0	Parent=Os11t0136101-00
Chr11	irgsp1_rep	CDS	1661680	1661790	.	+	0	Parent=Os11t0136101-00
Chr11	irgsp1_rep	three_prime_UTR	1661791	1662172	.	+	.	Parent=Os11t0136101-00
Chr11	irgsp1_rep	three_prime_UTR	1662297	1662454	.	+	.	Parent=Os11t0136101-00
Chr11	irgsp1_rep	three_prime_UTR	1662537	1662670	.	+	.	Parent=Os11t0136101-00
Chr11	irgsp1_rep	mRNA	1678748	1679455	.	+	.	ID=Os11t0136300-00;Name=Os11t0136300-00;Locus_id=Os11g0136300;Note=Similar to Integral membrane protein DUF6 containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2RAV3 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);TENOR=Os11t0136300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	1678748	1678876	.	+	0	Parent=Os11t0136300-00
Chr11	irgsp1_rep	CDS	1678988	1679139	.	+	0	Parent=Os11t0136300-00
Chr11	irgsp1_rep	CDS	1679248	1679455	.	+	1	Parent=Os11t0136300-00
Chr11	irgsp1_rep	mRNA	1681204	1686789	.	-	.	ID=Os11t0136400-00;Name=Os11t0136400-00;Locus_id=Os11g0136400;CGSNL Gene Symbol=ZIFL8;CGSNL Gene Name=ZINC-INDUCED FACILITATOR-LIKE 8;Oryzabase Gene Symbol Synonym(s)=OsZIFL8;Oryzabase Gene Name Synonym(s)=zinc-induced facilitator-like 8;Note=Major facilitator superfamily domain containing protein.;Transcript_evidence=AK249934 (DDBJ);ORF_evidence=NP_001065689.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);Oryzabase=9477;TENOR=Os11t0136400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	1686537	1686789	.	-	.	Parent=Os11t0136400-00
Chr11	irgsp1_rep	CDS	1686477	1686536	.	-	0	Parent=Os11t0136400-00
Chr11	irgsp1_rep	CDS	1686335	1686388	.	-	0	Parent=Os11t0136400-00
Chr11	irgsp1_rep	CDS	1686193	1686255	.	-	0	Parent=Os11t0136400-00
Chr11	irgsp1_rep	CDS	1686053	1686102	.	-	0	Parent=Os11t0136400-00
Chr11	irgsp1_rep	CDS	1685898	1685973	.	-	1	Parent=Os11t0136400-00
Chr11	irgsp1_rep	CDS	1685507	1685707	.	-	0	Parent=Os11t0136400-00
Chr11	irgsp1_rep	CDS	1684182	1684280	.	-	0	Parent=Os11t0136400-00
Chr11	irgsp1_rep	CDS	1682579	1682602	.	-	0	Parent=Os11t0136400-00
Chr11	irgsp1_rep	three_prime_UTR	1682297	1682578	.	-	.	Parent=Os11t0136400-00
Chr11	irgsp1_rep	three_prime_UTR	1681610	1681653	.	-	.	Parent=Os11t0136400-00
Chr11	irgsp1_rep	three_prime_UTR	1681204	1681286	.	-	.	Parent=Os11t0136400-00
Chr11	irgsp1_rep	mRNA	1682297	1689462	.	+	.	ID=Os11t0136450-00;Name=Os11t0136450-00;Locus_id=Os11g0136450;Note=Non-protein coding transcript.;Transcript_evidence=tplb0023l07 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os11t0136450-00
Chr11	irgsp1_rep	exon	1682297	1682577	.	+	.	Parent=Os11t0136450-00
Chr11	irgsp1_rep	exon	1684131	1684309	.	+	.	Parent=Os11t0136450-00
Chr11	irgsp1_rep	exon	1685532	1685643	.	+	.	Parent=Os11t0136450-00
Chr11	irgsp1_rep	exon	1685871	1686009	.	+	.	Parent=Os11t0136450-00
Chr11	irgsp1_rep	exon	1686185	1686602	.	+	.	Parent=Os11t0136450-00
Chr11	irgsp1_rep	exon	1686712	1686834	.	+	.	Parent=Os11t0136450-00
Chr11	irgsp1_rep	exon	1689238	1689462	.	+	.	Parent=Os11t0136450-00
Chr11	irgsp1_rep	mRNA	1690003	1691592	.	+	.	ID=Os11t0136500-00;Name=Os11t0136500-00;Locus_id=Os11g0136500;Note=Similar to 4'-phosphopantetheinyl transferase superfamily protein.;Transcript_evidence=AK071502 (DDBJ%2C Secondary hit);ORF_evidence=Q2RAV1 (UniProt);GO=Biological Process: macromolecule biosynthetic process (GO:0009059),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: holo-[acyl-carrier-protein] synthase activity (GO:0008897);InterPro=4'-phosphopantetheinyl transferase (IPR008278);Expression=AK071502;TENOR=Os11t0136500-00;KEGG=Os11t0136500-00
Chr11	irgsp1_rep	five_prime_UTR	1690003	1690008	.	+	.	Parent=Os11t0136500-00
Chr11	irgsp1_rep	CDS	1690009	1690154	.	+	0	Parent=Os11t0136500-00
Chr11	irgsp1_rep	CDS	1690271	1690403	.	+	1	Parent=Os11t0136500-00
Chr11	irgsp1_rep	CDS	1690540	1690775	.	+	0	Parent=Os11t0136500-00
Chr11	irgsp1_rep	CDS	1690897	1691068	.	+	1	Parent=Os11t0136500-00
Chr11	irgsp1_rep	CDS	1691179	1691340	.	+	0	Parent=Os11t0136500-00
Chr11	irgsp1_rep	three_prime_UTR	1691341	1691592	.	+	.	Parent=Os11t0136500-00
Chr11	irgsp1_rep	mRNA	1691861	1694288	.	+	.	ID=Os11t0136600-00;Name=Os11t0136600-00;Locus_id=Os11g0136600;CGSNL Gene Symbol=CDPK25;CGSNL Gene Name=CALCIUM-DEPENDENT PROTEIN KINASE 25;Oryzabase Gene Symbol Synonym(s)=OsCDPK25%2C OsCPK25;Oryzabase Gene Name Synonym(s)=calcium-dependent protein kinase;Note=Similar to Calcium-dependent protein kinase (Fragment).;Transcript_evidence=AF319480 (DDBJ%2C Best hit);ORF_evidence=Q41793 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Calcium-binding EF-hand (IPR002048),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),EF-hand-like domain (IPR011992),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=8076;Expression=AF319480;TENOR=Os11t0136600-00;KEGG=Os11t0136600-00 (EC:2.7.11.17)
Chr11	irgsp1_rep	five_prime_UTR	1691861	1691901	.	+	.	Parent=Os11t0136600-00
Chr11	irgsp1_rep	CDS	1691902	1692910	.	+	0	Parent=Os11t0136600-00
Chr11	irgsp1_rep	CDS	1693047	1693162	.	+	2	Parent=Os11t0136600-00
Chr11	irgsp1_rep	CDS	1693235	1693402	.	+	0	Parent=Os11t0136600-00
Chr11	irgsp1_rep	CDS	1693495	1693622	.	+	0	Parent=Os11t0136600-00
Chr11	irgsp1_rep	CDS	1693705	1693804	.	+	1	Parent=Os11t0136600-00
Chr11	irgsp1_rep	CDS	1693913	1694017	.	+	0	Parent=Os11t0136600-00
Chr11	irgsp1_rep	three_prime_UTR	1694018	1694288	.	+	.	Parent=Os11t0136600-00
Chr11	irgsp1_rep	mRNA	1694469	1696098	.	-	.	ID=Os11t0136701-00;Name=Os11t0136701-00;Locus_id=Os11g0136701;Note=Similar to predicted protein.;Transcript_evidence=AK103096 (DDBJ%2C Secondary hit);ORF_evidence=A3C8E0 (UniProt);Expression=AK103096;TENOR=Os11t0136701-00;KEGG=Os11t0136701-00
Chr11	irgsp1_rep	five_prime_UTR	1695915	1696098	.	-	.	Parent=Os11t0136701-00
Chr11	irgsp1_rep	CDS	1695792	1695914	.	-	0	Parent=Os11t0136701-00
Chr11	irgsp1_rep	CDS	1695024	1695089	.	-	0	Parent=Os11t0136701-00
Chr11	irgsp1_rep	three_prime_UTR	1695012	1695023	.	-	.	Parent=Os11t0136701-00
Chr11	irgsp1_rep	three_prime_UTR	1694469	1694767	.	-	.	Parent=Os11t0136701-00
Chr11	irgsp1_rep	mRNA	1696964	1699220	.	-	.	ID=Os11t0136800-01;Name=Os11t0136800-01;Locus_id=Os11g0136800;Oryzabase Gene Symbol Synonym(s)=OsPP118;Oryzabase Gene Name Synonym(s)=Protein phosphatase 118;Note=Similar to predicted protein.;Transcript_evidence=AK106395 (DDBJ%2C Best hit);ORF_evidence=Q2HSZ6 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Biological Process: dephosphorylation (GO:0016311),Molecular Function: protein tyrosine phosphatase activity (GO:0004725),Molecular Function: protein tyrosine/serine/threonine phosphatase activity (GO:0008138),Molecular Function: phosphatase activity (GO:0016791);InterPro=Dual specificity phosphatase%2C catalytic domain (IPR000340),Protein-tyrosine/Dual-specificity phosphatase (IPR000387),Protein-tyrosine phosphatase%2C active site (IPR016130),Dual specificity phosphatase%2C subgroup%2C catalytic domain (IPR020422);NIAS_FLcDNA=002-102-F06;Oryzabase=18658;Expression=AK106395;TENOR=Os11t0136800-01;KEGG=Os11t0136800-01 (EC:3.1.3.16%2C EC:3.1.3.48)
Chr11	irgsp1_rep	five_prime_UTR	1699085	1699220	.	-	.	Parent=Os11t0136800-01
Chr11	irgsp1_rep	CDS	1698666	1699084	.	-	0	Parent=Os11t0136800-01
Chr11	irgsp1_rep	CDS	1698128	1698251	.	-	1	Parent=Os11t0136800-01
Chr11	irgsp1_rep	three_prime_UTR	1698010	1698127	.	-	.	Parent=Os11t0136800-01
Chr11	irgsp1_rep	three_prime_UTR	1697852	1697930	.	-	.	Parent=Os11t0136800-01
Chr11	irgsp1_rep	three_prime_UTR	1696964	1697433	.	-	.	Parent=Os11t0136800-01
Chr11	irgsp1_rep	mRNA	1696486	1699115	.	-	.	ID=Os11t0136800-02;Name=Os11t0136800-02;Locus_id=Os11g0136800;Oryzabase Gene Symbol Synonym(s)=OsPP118;Oryzabase Gene Name Synonym(s)=Protein phosphatase 118;Note=Similar to Dual specificity protein phosphatase 19 (EC 3.1.3.48) (EC 3.1.3.16) (Stress-activated protein kinase pathway-regulating phosphatase 1) (Protein phosphatase SKRP1). Splice isoform 2.;Transcript_evidence=AK063731 (DDBJ%2C Best hit);ORF_evidence=Q2HSZ6 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Biological Process: dephosphorylation (GO:0016311),Molecular Function: protein tyrosine phosphatase activity (GO:0004725),Molecular Function: protein tyrosine/serine/threonine phosphatase activity (GO:0008138),Molecular Function: phosphatase activity (GO:0016791);InterPro=Dual specificity phosphatase%2C catalytic domain (IPR000340),Protein-tyrosine/Dual-specificity phosphatase (IPR000387),Protein-tyrosine phosphatase%2C active site (IPR016130),Tyrosine protein phosphatase%2C dual specificity%2C 12 (IPR016278),Dual specificity phosphatase%2C subgroup%2C catalytic domain (IPR020422);NIAS_FLcDNA=001-120-E08;Oryzabase=18658;Expression=AK063731;TENOR=Os11t0136800-02;KEGG=Os11t0136800-02 (EC:3.1.3.48)
Chr11	irgsp1_rep	five_prime_UTR	1699085	1699115	.	-	.	Parent=Os11t0136800-02
Chr11	irgsp1_rep	CDS	1698666	1699084	.	-	0	Parent=Os11t0136800-02
Chr11	irgsp1_rep	CDS	1698199	1698251	.	-	1	Parent=Os11t0136800-02
Chr11	irgsp1_rep	CDS	1698010	1698074	.	-	2	Parent=Os11t0136800-02
Chr11	irgsp1_rep	CDS	1697852	1697930	.	-	0	Parent=Os11t0136800-02
Chr11	irgsp1_rep	CDS	1697134	1697433	.	-	2	Parent=Os11t0136800-02
Chr11	irgsp1_rep	CDS	1696733	1696887	.	-	2	Parent=Os11t0136800-02
Chr11	irgsp1_rep	three_prime_UTR	1696486	1696732	.	-	.	Parent=Os11t0136800-02
Chr11	irgsp1_rep	mRNA	1702228	1705477	.	-	.	ID=Os11t0137000-01;Name=Os11t0137000-01;Locus_id=Os11g0137000;RAP-DB Gene Symbol Synonym(s)=OsPIN1c;RAP-DB Gene Name Synonym(s)=PIN-FORMED1c;CGSNL Gene Symbol=PIN1C;CGSNL Gene Name=PIN PROTEIN 1C;Oryzabase Gene Symbol Synonym(s)=PIN1B%2C OsPIN1B%2C OsPIN1b%2C OsPIN1c;Oryzabase Gene Name Synonym(s)=PIN PROTEIN 1B;Note=PIN protein%2C Auxin efflux carrier%2C Auxin transport and signaling%2C Panicle formation;Transcript_evidence=AK103181;ORF_evidence=P0C0X5;GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral component of membrane (GO:0016021);InterPro=Membrane transport protein (IPR004776),Auxin efflux carrier%2C plant type (IPR014024);NIAS_FLcDNA=J033121I24;Manual Curation=August 16%2C 2019;Literature_PMID=31410483;Oryzabase=6763;Expression=AK103181;TENOR=Os11t0137000-01;KEGG=Os11t0137000-01
Chr11	irgsp1_rep	five_prime_UTR	1705259	1705477	.	-	.	Parent=Os11t0137000-01
Chr11	irgsp1_rep	CDS	1704232	1705258	.	-	0	Parent=Os11t0137000-01
Chr11	irgsp1_rep	CDS	1703586	1703835	.	-	2	Parent=Os11t0137000-01
Chr11	irgsp1_rep	CDS	1703390	1703475	.	-	1	Parent=Os11t0137000-01
Chr11	irgsp1_rep	CDS	1703132	1703289	.	-	2	Parent=Os11t0137000-01
Chr11	irgsp1_rep	CDS	1702965	1703041	.	-	0	Parent=Os11t0137000-01
Chr11	irgsp1_rep	CDS	1702575	1702641	.	-	1	Parent=Os11t0137000-01
Chr11	irgsp1_rep	three_prime_UTR	1702228	1702574	.	-	.	Parent=Os11t0137000-01
Chr11	irgsp1_rep	mRNA	1702964	1705267	.	+	.	ID=Os11t0137050-00;Name=Os11t0137050-00;Locus_id=Os11g0137050;Note=Hypothetical protein.;Transcript_evidence=tplb0036f07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0137050-00
Chr11	irgsp1_rep	five_prime_UTR	1702964	1703066	.	+	.	Parent=Os11t0137050-00
Chr11	irgsp1_rep	five_prime_UTR	1703153	1703323	.	+	.	Parent=Os11t0137050-00
Chr11	irgsp1_rep	five_prime_UTR	1703527	1703874	.	+	.	Parent=Os11t0137050-00
Chr11	irgsp1_rep	five_prime_UTR	1704070	1704548	.	+	.	Parent=Os11t0137050-00
Chr11	irgsp1_rep	CDS	1704549	1705267	.	+	0	Parent=Os11t0137050-00
Chr11	irgsp1_rep	mRNA	1707728	1712884	.	-	.	ID=Os11t0137100-01;Name=Os11t0137100-01;Locus_id=Os11g0137100;Oryzabase Gene Name Synonym(s)=M-phase phosphoprotein 10;Note=Similar to predicted protein.;Transcript_evidence=AK242945 (DDBJ%2C Best hit);ORF_evidence=Q2RAU6 (UniProt);GO=Biological Process: rRNA processing (GO:0006364),Cellular Component: nucleus (GO:0005634),Cellular Component: ribonucleoprotein complex (GO:0030529);InterPro=Mpp10 protein (IPR007151),U3 small nucleolar ribonucleoprotein complex%2C subunit Mpp10p (IPR012173);NIAS_FLcDNA=J090088A13;Oryzabase=20160;TENOR=Os11t0137100-01;KEGG=Os11t0137100-01
Chr11	irgsp1_rep	five_prime_UTR	1712766	1712884	.	-	.	Parent=Os11t0137100-01
Chr11	irgsp1_rep	CDS	1712088	1712765	.	-	0	Parent=Os11t0137100-01
Chr11	irgsp1_rep	CDS	1711732	1711787	.	-	0	Parent=Os11t0137100-01
Chr11	irgsp1_rep	CDS	1710597	1710720	.	-	1	Parent=Os11t0137100-01
Chr11	irgsp1_rep	CDS	1710402	1710512	.	-	0	Parent=Os11t0137100-01
Chr11	irgsp1_rep	CDS	1710142	1710279	.	-	0	Parent=Os11t0137100-01
Chr11	irgsp1_rep	CDS	1709958	1710026	.	-	0	Parent=Os11t0137100-01
Chr11	irgsp1_rep	CDS	1709819	1709860	.	-	0	Parent=Os11t0137100-01
Chr11	irgsp1_rep	CDS	1709643	1709711	.	-	0	Parent=Os11t0137100-01
Chr11	irgsp1_rep	CDS	1708850	1708921	.	-	0	Parent=Os11t0137100-01
Chr11	irgsp1_rep	CDS	1708711	1708764	.	-	0	Parent=Os11t0137100-01
Chr11	irgsp1_rep	CDS	1708491	1708632	.	-	0	Parent=Os11t0137100-01
Chr11	irgsp1_rep	CDS	1708218	1708258	.	-	2	Parent=Os11t0137100-01
Chr11	irgsp1_rep	three_prime_UTR	1707728	1708217	.	-	.	Parent=Os11t0137100-01
Chr11	irgsp1_rep	mRNA	1708491	1710720	.	+	.	ID=Os11t0137150-00;Name=Os11t0137150-00;Locus_id=Os11g0137150;Note=Non-protein coding transcript.;Transcript_evidence=BT016200 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0137150-00
Chr11	irgsp1_rep	exon	1708491	1708625	.	+	.	Parent=Os11t0137150-00
Chr11	irgsp1_rep	exon	1708699	1708762	.	+	.	Parent=Os11t0137150-00
Chr11	irgsp1_rep	exon	1708848	1708913	.	+	.	Parent=Os11t0137150-00
Chr11	irgsp1_rep	exon	1709630	1709713	.	+	.	Parent=Os11t0137150-00
Chr11	irgsp1_rep	exon	1709812	1709862	.	+	.	Parent=Os11t0137150-00
Chr11	irgsp1_rep	exon	1709961	1710014	.	+	.	Parent=Os11t0137150-00
Chr11	irgsp1_rep	exon	1710126	1710277	.	+	.	Parent=Os11t0137150-00
Chr11	irgsp1_rep	exon	1710400	1710505	.	+	.	Parent=Os11t0137150-00
Chr11	irgsp1_rep	exon	1710585	1710720	.	+	.	Parent=Os11t0137150-00
Chr11	irgsp1_rep	mRNA	1714986	1718589	.	+	.	ID=Os11t0137200-01;Name=Os11t0137200-01;Locus_id=Os11g0137200;Note=Hydroxymethylglutaryl-CoA lyase.;Transcript_evidence=AK243177 (DDBJ%2C Best hit);ORF_evidence=B6TKJ5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Pyruvate carboxyltransferase (IPR000891),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J100036L03;TENOR=Os11t0137200-01;KEGG=Os11t0137200-01 (EC:4.1.3.4)
Chr11	irgsp1_rep	five_prime_UTR	1714986	1715166	.	+	.	Parent=Os11t0137200-01
Chr11	irgsp1_rep	five_prime_UTR	1715872	1715872	.	+	.	Parent=Os11t0137200-01
Chr11	irgsp1_rep	CDS	1715873	1715991	.	+	0	Parent=Os11t0137200-01
Chr11	irgsp1_rep	CDS	1716161	1716293	.	+	1	Parent=Os11t0137200-01
Chr11	irgsp1_rep	CDS	1716556	1716735	.	+	0	Parent=Os11t0137200-01
Chr11	irgsp1_rep	CDS	1717058	1717138	.	+	0	Parent=Os11t0137200-01
Chr11	irgsp1_rep	CDS	1717271	1717434	.	+	0	Parent=Os11t0137200-01
Chr11	irgsp1_rep	CDS	1717530	1717666	.	+	1	Parent=Os11t0137200-01
Chr11	irgsp1_rep	CDS	1717912	1718027	.	+	2	Parent=Os11t0137200-01
Chr11	irgsp1_rep	CDS	1718146	1718379	.	+	0	Parent=Os11t0137200-01
Chr11	irgsp1_rep	three_prime_UTR	1718380	1718589	.	+	.	Parent=Os11t0137200-01
Chr11	irgsp1_rep	mRNA	1718538	1718848	.	-	.	ID=Os11t0137250-01;Name=Os11t0137250-01;Locus_id=Os11g0137250;Note=Hypothetical gene.;Transcript_evidence=AK242555 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J080319M20;TENOR=Os11t0137250-01
Chr11	irgsp1_rep	five_prime_UTR	1718843	1718848	.	-	.	Parent=Os11t0137250-01
Chr11	irgsp1_rep	CDS	1718538	1718842	.	-	0	Parent=Os11t0137250-01
Chr11	irgsp1_rep	mRNA	1723822	1735147	.	-	.	ID=Os11t0137300-01;Name=Os11t0137300-01;Locus_id=Os11g0137300;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=AK121066 (DDBJ%2C Best hit);ORF_evidence=Q2RAU4 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),Proteasome stabiliser ECM29 (IPR024372);NIAS_FLcDNA=J023060D18;TENOR=Os11t0137300-01
Chr11	irgsp1_rep	five_prime_UTR	1735070	1735147	.	-	.	Parent=Os11t0137300-01
Chr11	irgsp1_rep	CDS	1734887	1735069	.	-	0	Parent=Os11t0137300-01
Chr11	irgsp1_rep	CDS	1734313	1734480	.	-	0	Parent=Os11t0137300-01
Chr11	irgsp1_rep	CDS	1734130	1734219	.	-	0	Parent=Os11t0137300-01
Chr11	irgsp1_rep	CDS	1733824	1733960	.	-	0	Parent=Os11t0137300-01
Chr11	irgsp1_rep	CDS	1733655	1733745	.	-	1	Parent=Os11t0137300-01
Chr11	irgsp1_rep	CDS	1733431	1733513	.	-	0	Parent=Os11t0137300-01
Chr11	irgsp1_rep	CDS	1733243	1733349	.	-	1	Parent=Os11t0137300-01
Chr11	irgsp1_rep	CDS	1732299	1732451	.	-	2	Parent=Os11t0137300-01
Chr11	irgsp1_rep	CDS	1731340	1731404	.	-	2	Parent=Os11t0137300-01
Chr11	irgsp1_rep	CDS	1731079	1731166	.	-	0	Parent=Os11t0137300-01
Chr11	irgsp1_rep	CDS	1730834	1730912	.	-	2	Parent=Os11t0137300-01
Chr11	irgsp1_rep	CDS	1730634	1730742	.	-	1	Parent=Os11t0137300-01
Chr11	irgsp1_rep	CDS	1728570	1728629	.	-	0	Parent=Os11t0137300-01
Chr11	irgsp1_rep	CDS	1728106	1728224	.	-	0	Parent=Os11t0137300-01
Chr11	irgsp1_rep	CDS	1727626	1728001	.	-	1	Parent=Os11t0137300-01
Chr11	irgsp1_rep	CDS	1727365	1727549	.	-	0	Parent=Os11t0137300-01
Chr11	irgsp1_rep	CDS	1727205	1727274	.	-	1	Parent=Os11t0137300-01
Chr11	irgsp1_rep	CDS	1726183	1726333	.	-	0	Parent=Os11t0137300-01
Chr11	irgsp1_rep	CDS	1725913	1726082	.	-	2	Parent=Os11t0137300-01
Chr11	irgsp1_rep	CDS	1725485	1725829	.	-	0	Parent=Os11t0137300-01
Chr11	irgsp1_rep	CDS	1724661	1724828	.	-	0	Parent=Os11t0137300-01
Chr11	irgsp1_rep	CDS	1724261	1724554	.	-	0	Parent=Os11t0137300-01
Chr11	irgsp1_rep	CDS	1723822	1723862	.	-	0	Parent=Os11t0137300-01
Chr11	irgsp1_rep	mRNA	1723822	1735111	.	-	.	ID=Os11t0137300-02;Name=Os11t0137300-02;Locus_id=Os11g0137300;Note=Similar to HEAT repeat family protein%2C expressed.;Transcript_evidence=AK065453 (DDBJ%2C Best hit);ORF_evidence=Q2RAU4 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),Proteasome stabiliser ECM29 (IPR024372);NIAS_FLcDNA=J013023D11;Expression=AK065453;TENOR=Os11t0137300-02;KEGG=Os11t0137300-02
Chr11	irgsp1_rep	five_prime_UTR	1735070	1735111	.	-	.	Parent=Os11t0137300-02
Chr11	irgsp1_rep	CDS	1734887	1735069	.	-	0	Parent=Os11t0137300-02
Chr11	irgsp1_rep	CDS	1734313	1734480	.	-	0	Parent=Os11t0137300-02
Chr11	irgsp1_rep	CDS	1734130	1734219	.	-	0	Parent=Os11t0137300-02
Chr11	irgsp1_rep	CDS	1733824	1733960	.	-	0	Parent=Os11t0137300-02
Chr11	irgsp1_rep	CDS	1733655	1733745	.	-	1	Parent=Os11t0137300-02
Chr11	irgsp1_rep	CDS	1733431	1733513	.	-	0	Parent=Os11t0137300-02
Chr11	irgsp1_rep	CDS	1733243	1733349	.	-	1	Parent=Os11t0137300-02
Chr11	irgsp1_rep	CDS	1732299	1732451	.	-	2	Parent=Os11t0137300-02
Chr11	irgsp1_rep	CDS	1731340	1731404	.	-	2	Parent=Os11t0137300-02
Chr11	irgsp1_rep	CDS	1731079	1731166	.	-	0	Parent=Os11t0137300-02
Chr11	irgsp1_rep	CDS	1730834	1730912	.	-	2	Parent=Os11t0137300-02
Chr11	irgsp1_rep	CDS	1730634	1730742	.	-	1	Parent=Os11t0137300-02
Chr11	irgsp1_rep	CDS	1728570	1728629	.	-	0	Parent=Os11t0137300-02
Chr11	irgsp1_rep	CDS	1728106	1728224	.	-	0	Parent=Os11t0137300-02
Chr11	irgsp1_rep	CDS	1727864	1727912	.	-	1	Parent=Os11t0137300-02
Chr11	irgsp1_rep	three_prime_UTR	1727626	1727863	.	-	.	Parent=Os11t0137300-02
Chr11	irgsp1_rep	three_prime_UTR	1727365	1727549	.	-	.	Parent=Os11t0137300-02
Chr11	irgsp1_rep	three_prime_UTR	1727205	1727274	.	-	.	Parent=Os11t0137300-02
Chr11	irgsp1_rep	three_prime_UTR	1726183	1726333	.	-	.	Parent=Os11t0137300-02
Chr11	irgsp1_rep	three_prime_UTR	1725913	1726082	.	-	.	Parent=Os11t0137300-02
Chr11	irgsp1_rep	three_prime_UTR	1725485	1725829	.	-	.	Parent=Os11t0137300-02
Chr11	irgsp1_rep	three_prime_UTR	1724661	1724828	.	-	.	Parent=Os11t0137300-02
Chr11	irgsp1_rep	three_prime_UTR	1724261	1724554	.	-	.	Parent=Os11t0137300-02
Chr11	irgsp1_rep	three_prime_UTR	1723822	1723862	.	-	.	Parent=Os11t0137300-02
Chr11	irgsp1_rep	mRNA	1735473	1741667	.	+	.	ID=Os11t0137400-00;Name=Os11t0137400-00;Locus_id=Os11g0137400;CGSNL Gene Symbol=DLN244;CGSNL Gene Name=DLN REPRESSOR 244;Oryzabase Gene Symbol Synonym(s)=OsDLN244;Oryzabase Gene Name Synonym(s)=DLN repressor 244%2C DLN motif protein 244;Note=Hypothetical conserved gene.;Transcript_evidence=AK365708 (DDBJ);ORF_evidence=B8BLY0 (UniProt);GO=Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Transcription factor TFE/TFIIEalpha HTH domain (IPR017919),TFIIEalpha/SarR/Rpc3 HTH domain (IPR024550);Oryzabase=23235;TENOR=Os11t0137400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	1735473	1735660	.	+	0	Parent=Os11t0137400-00
Chr11	irgsp1_rep	CDS	1736855	1736978	.	+	1	Parent=Os11t0137400-00
Chr11	irgsp1_rep	CDS	1738194	1738196	.	+	0	Parent=Os11t0137400-00
Chr11	irgsp1_rep	three_prime_UTR	1738197	1738319	.	+	.	Parent=Os11t0137400-00
Chr11	irgsp1_rep	three_prime_UTR	1739121	1739230	.	+	.	Parent=Os11t0137400-00
Chr11	irgsp1_rep	three_prime_UTR	1739316	1739499	.	+	.	Parent=Os11t0137400-00
Chr11	irgsp1_rep	three_prime_UTR	1740171	1740356	.	+	.	Parent=Os11t0137400-00
Chr11	irgsp1_rep	three_prime_UTR	1740643	1740861	.	+	.	Parent=Os11t0137400-00
Chr11	irgsp1_rep	three_prime_UTR	1740970	1741183	.	+	.	Parent=Os11t0137400-00
Chr11	irgsp1_rep	three_prime_UTR	1741561	1741667	.	+	.	Parent=Os11t0137400-00
Chr11	irgsp1_rep	mRNA	1744099	1748824	.	+	.	ID=Os11t0137500-01;Name=Os11t0137500-01;Locus_id=Os11g0137500;Note=Transcription factor TFE/TFIIEalpha%2C HTH domain domain containing protein.;Transcript_evidence=AK070070 (DDBJ%2C Best hit);ORF_evidence=A3C8F6 (UniProt);GO=Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Transcription factor TFE/TFIIEalpha HTH domain (IPR017919),TFIIEalpha/SarR/Rpc3 HTH domain (IPR024550);NIAS_FLcDNA=J023044M12;Expression=AK070070;TENOR=Os11t0137500-01;KEGG=Os11t0137500-01
Chr11	irgsp1_rep	five_prime_UTR	1744099	1744214	.	+	.	Parent=Os11t0137500-01
Chr11	irgsp1_rep	CDS	1744215	1744240	.	+	0	Parent=Os11t0137500-01
Chr11	irgsp1_rep	CDS	1744356	1744475	.	+	1	Parent=Os11t0137500-01
Chr11	irgsp1_rep	CDS	1744954	1745074	.	+	1	Parent=Os11t0137500-01
Chr11	irgsp1_rep	CDS	1745453	1745584	.	+	0	Parent=Os11t0137500-01
Chr11	irgsp1_rep	CDS	1746278	1746391	.	+	0	Parent=Os11t0137500-01
Chr11	irgsp1_rep	three_prime_UTR	1746392	1747311	.	+	.	Parent=Os11t0137500-01
Chr11	irgsp1_rep	three_prime_UTR	1747684	1748824	.	+	.	Parent=Os11t0137500-01
Chr11	irgsp1_rep	mRNA	1775407	1777333	.	+	.	ID=Os11t0138300-01;Name=Os11t0138300-01;Locus_id=Os11g0138300;CGSNL Gene Symbol=CYP94D5A;CGSNL Gene Name=CYTOCHROME P450 94D5A;Oryzabase Gene Symbol Synonym(s)=OsCYP94D5a;Oryzabase Gene Name Synonym(s)=CytoChrome P450 94D5a;Note=Conserved hypothetical protein.;Transcript_evidence=AK103307 (DDBJ%2C Best hit);ORF_evidence=NP_001174399.1 (RefSeq);NIAS_FLcDNA=J033125E14;Oryzabase=23105;TENOR=Os11t0138300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	1775407	1776068	.	+	.	Parent=Os11t0138300-01
Chr11	irgsp1_rep	CDS	1776069	1776920	.	+	0	Parent=Os11t0138300-01
Chr11	irgsp1_rep	three_prime_UTR	1776921	1777333	.	+	.	Parent=Os11t0138300-01
Chr11	irgsp1_rep	mRNA	1777330	1778832	.	-	.	ID=Os11t0138350-01;Name=Os11t0138350-01;Locus_id=Os11g0138350;Note=Hypothetical conserved gene.;Transcript_evidence=AK242839 (DDBJ%2C Best hit);ORF_evidence=B8BLY1 (UniProt);NIAS_FLcDNA=J090069N13;TENOR=Os11t0138350-01;KEGG=Os11t0138350-01
Chr11	irgsp1_rep	CDS	1778621	1778832	.	-	0	Parent=Os11t0138350-01
Chr11	irgsp1_rep	CDS	1777868	1777970	.	-	1	Parent=Os11t0138350-01
Chr11	irgsp1_rep	three_prime_UTR	1777330	1777867	.	-	.	Parent=Os11t0138350-01
Chr11	irgsp1_rep	mRNA	1781776	1786597	.	-	.	ID=Os11t0138400-00;Name=Os11t0138400-00;Locus_id=Os11g0138400;Note=Similar to Phosphoglycerate mutase family protein%2C expressed.;Transcript_evidence=EU956199 (DDBJ);ORF_evidence=Q2RAT6 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Phosphoglycerate/bisphosphoglycerate mutase%2C active site (IPR001345),Histidine phosphatase superfamily%2C clade-1 (IPR013078);TENOR=Os11t0138400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	1786349	1786597	.	-	0	Parent=Os11t0138400-00
Chr11	irgsp1_rep	CDS	1786190	1786240	.	-	0	Parent=Os11t0138400-00
Chr11	irgsp1_rep	CDS	1785917	1786027	.	-	0	Parent=Os11t0138400-00
Chr11	irgsp1_rep	CDS	1785692	1785850	.	-	0	Parent=Os11t0138400-00
Chr11	irgsp1_rep	CDS	1782156	1782231	.	-	0	Parent=Os11t0138400-00
Chr11	irgsp1_rep	CDS	1781794	1782023	.	-	2	Parent=Os11t0138400-00
Chr11	irgsp1_rep	three_prime_UTR	1781776	1781793	.	-	.	Parent=Os11t0138400-00
Chr11	irgsp1_rep	mRNA	1798930	1800298	.	-	.	ID=Os11t0138600-00;Name=Os11t0138600-00;Locus_id=Os11g0138600;Note=Similar to Phosphoglycerate mutase family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QY22 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Phosphoglycerate/bisphosphoglycerate mutase%2C active site (IPR001345),Histidine phosphatase superfamily%2C clade-1 (IPR013078);TENOR=Os11t0138600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	1800181	1800298	.	-	0	Parent=Os11t0138600-00
Chr11	irgsp1_rep	CDS	1799739	1799857	.	-	2	Parent=Os11t0138600-00
Chr11	irgsp1_rep	CDS	1799528	1799659	.	-	0	Parent=Os11t0138600-00
Chr11	irgsp1_rep	CDS	1799354	1799429	.	-	0	Parent=Os11t0138600-00
Chr11	irgsp1_rep	CDS	1798930	1799123	.	-	2	Parent=Os11t0138600-00
Chr11	irgsp1_rep	mRNA	1801184	1802662	.	+	.	ID=Os11t0138700-01;Name=Os11t0138700-01;Locus_id=Os11g0138700;Oryzabase Gene Symbol Synonym(s)=OsFbox566%2C Os_F0279;Oryzabase Gene Name Synonym(s)=F-box protein 566;Note=Kelch-type beta propeller domain containing protein.;Transcript_evidence=AK109658 (DDBJ%2C Best hit);ORF_evidence=Q2QY21 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Kelch repeat type 1 (IPR006652),Kelch-type beta propeller (IPR015915),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-140-F10;Oryzabase=17335;Expression=AK109658;TENOR=Os11t0138700-01;KEGG=Os11t0138700-01
Chr11	irgsp1_rep	five_prime_UTR	1801184	1801256	.	+	.	Parent=Os11t0138700-01
Chr11	irgsp1_rep	CDS	1801257	1802504	.	+	0	Parent=Os11t0138700-01
Chr11	irgsp1_rep	three_prime_UTR	1802505	1802662	.	+	.	Parent=Os11t0138700-01
Chr11	irgsp1_rep	mRNA	1808129	1809530	.	+	.	ID=Os11t0138900-01;Name=Os11t0138900-01;Locus_id=Os11g0138900;Note=Alpha/beta hydrolase fold-3 domain containing protein.;Transcript_evidence=AK059449 (DDBJ%2C Best hit);ORF_evidence=A2ZB84 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=001-028-B01;Expression=AK059449;TENOR=Os11t0138900-01;KEGG=Os11t0138900-01
Chr11	irgsp1_rep	five_prime_UTR	1808129	1808186	.	+	.	Parent=Os11t0138900-01
Chr11	irgsp1_rep	CDS	1808187	1809257	.	+	0	Parent=Os11t0138900-01
Chr11	irgsp1_rep	three_prime_UTR	1809258	1809530	.	+	.	Parent=Os11t0138900-01
Chr11	irgsp1_rep	mRNA	1808153	1809534	.	+	.	ID=Os11t0138900-02;Name=Os11t0138900-02;Locus_id=Os11g0138900;Note=Alpha/beta hydrolase fold-3 domain containing protein.;Transcript_evidence=AK104145 (DDBJ%2C Best hit);ORF_evidence=A2ZB84 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=006-206-B11;Expression=AK104145;TENOR=Os11t0138900-02;KEGG=Os11t0138900-02
Chr11	irgsp1_rep	five_prime_UTR	1808153	1808186	.	+	.	Parent=Os11t0138900-02
Chr11	irgsp1_rep	CDS	1808187	1809257	.	+	0	Parent=Os11t0138900-02
Chr11	irgsp1_rep	three_prime_UTR	1809258	1809534	.	+	.	Parent=Os11t0138900-02
Chr11	irgsp1_rep	mRNA	1811380	1812827	.	-	.	ID=Os11t0138950-00;Name=Os11t0138950-00;Locus_id=Os11g0138950;Note=Hypothetical gene.;Transcript_evidence=AK101030 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;Expression=AK101030;TENOR=Os11t0138950-00;KEGG=Os11t0138950-00
Chr11	irgsp1_rep	five_prime_UTR	1812491	1812827	.	-	.	Parent=Os11t0138950-00
Chr11	irgsp1_rep	CDS	1812107	1812490	.	-	0	Parent=Os11t0138950-00
Chr11	irgsp1_rep	three_prime_UTR	1811380	1812106	.	-	.	Parent=Os11t0138950-00
Chr11	irgsp1_rep	mRNA	1813628	1816674	.	-	.	ID=Os11t0139100-01;Name=Os11t0139100-01;Locus_id=Os11g0139100;Note=Similar to 50S ribosomal protein L24.;Transcript_evidence=AK121443 (DDBJ%2C Best hit);ORF_evidence=Q2QY18 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L24 (IPR003256),KOW (IPR005824),Ribosomal protein L24/L26%2C conserved site (IPR005825),Translation protein SH3-like (IPR008991),Ribosomal protein L24%2C SH3-like (IPR014723);NIAS_FLcDNA=J023140O18;Expression=AK121443;TENOR=Os11t0139100-01;KEGG=Os11t0139100-01
Chr11	irgsp1_rep	five_prime_UTR	1816559	1816674	.	-	.	Parent=Os11t0139100-01
Chr11	irgsp1_rep	CDS	1816499	1816558	.	-	0	Parent=Os11t0139100-01
Chr11	irgsp1_rep	CDS	1816309	1816404	.	-	0	Parent=Os11t0139100-01
Chr11	irgsp1_rep	CDS	1814994	1815097	.	-	0	Parent=Os11t0139100-01
Chr11	irgsp1_rep	CDS	1814749	1814885	.	-	1	Parent=Os11t0139100-01
Chr11	irgsp1_rep	CDS	1813872	1813954	.	-	2	Parent=Os11t0139100-01
Chr11	irgsp1_rep	three_prime_UTR	1813628	1813871	.	-	.	Parent=Os11t0139100-01
Chr11	irgsp1_rep	mRNA	1818916	1820504	.	+	.	ID=Os11t0139400-01;Name=Os11t0139400-01;Locus_id=Os11g0139400;Note=Protein of unknown function DUF250 domain containing protein.;Transcript_evidence=AK107562 (DDBJ%2C Best hit);ORF_evidence=NP_001159001.1 (RefSeq);InterPro=Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=002-130-B12;Expression=AK107562;TENOR=Os11t0139400-01;KEGG=Os11t0139400-01
Chr11	irgsp1_rep	five_prime_UTR	1818916	1818997	.	+	.	Parent=Os11t0139400-01
Chr11	irgsp1_rep	CDS	1818998	1820164	.	+	0	Parent=Os11t0139400-01
Chr11	irgsp1_rep	three_prime_UTR	1820165	1820504	.	+	.	Parent=Os11t0139400-01
Chr11	irgsp1_rep	mRNA	1821373	1828276	.	+	.	ID=Os11t0139500-01;Name=Os11t0139500-01;Locus_id=Os11g0139500;Note=Similar to RNA recognition motif family protein%2C expressed.;Transcript_evidence=AK120730 (DDBJ%2C Best hit);ORF_evidence=Q2RAS7 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023003B09;TENOR=Os11t0139500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	1821373	1821483	.	+	.	Parent=Os11t0139500-01
Chr11	irgsp1_rep	five_prime_UTR	1822560	1822878	.	+	.	Parent=Os11t0139500-01
Chr11	irgsp1_rep	CDS	1822879	1823292	.	+	0	Parent=Os11t0139500-01
Chr11	irgsp1_rep	CDS	1823375	1823530	.	+	0	Parent=Os11t0139500-01
Chr11	irgsp1_rep	three_prime_UTR	1823531	1824250	.	+	.	Parent=Os11t0139500-01
Chr11	irgsp1_rep	three_prime_UTR	1824393	1824499	.	+	.	Parent=Os11t0139500-01
Chr11	irgsp1_rep	three_prime_UTR	1824597	1824801	.	+	.	Parent=Os11t0139500-01
Chr11	irgsp1_rep	three_prime_UTR	1824890	1825062	.	+	.	Parent=Os11t0139500-01
Chr11	irgsp1_rep	three_prime_UTR	1825173	1825255	.	+	.	Parent=Os11t0139500-01
Chr11	irgsp1_rep	three_prime_UTR	1825663	1826541	.	+	.	Parent=Os11t0139500-01
Chr11	irgsp1_rep	three_prime_UTR	1827300	1828276	.	+	.	Parent=Os11t0139500-01
Chr11	irgsp1_rep	mRNA	1821374	1826026	.	+	.	ID=Os11t0139500-02;Name=Os11t0139500-02;Locus_id=Os11g0139500;Note=Similar to RNA recognition motif family protein%2C expressed.;Transcript_evidence=AK121845 (DDBJ%2C Best hit);ORF_evidence=Q2RAS7 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033101I21;TENOR=Os11t0139500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	1821374	1821374	.	+	.	Parent=Os11t0139500-02
Chr11	irgsp1_rep	CDS	1821375	1821483	.	+	0	Parent=Os11t0139500-02
Chr11	irgsp1_rep	CDS	1822916	1823292	.	+	2	Parent=Os11t0139500-02
Chr11	irgsp1_rep	CDS	1823375	1823485	.	+	0	Parent=Os11t0139500-02
Chr11	irgsp1_rep	CDS	1824110	1824250	.	+	0	Parent=Os11t0139500-02
Chr11	irgsp1_rep	CDS	1824329	1824499	.	+	0	Parent=Os11t0139500-02
Chr11	irgsp1_rep	CDS	1824597	1824801	.	+	0	Parent=Os11t0139500-02
Chr11	irgsp1_rep	CDS	1824890	1825062	.	+	2	Parent=Os11t0139500-02
Chr11	irgsp1_rep	CDS	1825173	1825255	.	+	0	Parent=Os11t0139500-02
Chr11	irgsp1_rep	CDS	1825663	1825870	.	+	1	Parent=Os11t0139500-02
Chr11	irgsp1_rep	three_prime_UTR	1825871	1826026	.	+	.	Parent=Os11t0139500-02
Chr11	irgsp1_rep	mRNA	1826352	1828276	.	+	.	ID=Os11t0139500-03;Name=Os11t0139500-03;Locus_id=Os11g0139500;Note=Hypothetical conserved gene.;Transcript_evidence=AK103113 (DDBJ%2C Best hit);ORF_evidence=D6MKB2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),Basic leucine zipper (IPR011700);NIAS_FLcDNA=J033119E15;Expression=AK103113;TENOR=Os11t0139500-03;KEGG=Os11t0139500-03
Chr11	irgsp1_rep	five_prime_UTR	1826352	1826541	.	+	.	Parent=Os11t0139500-03
Chr11	irgsp1_rep	five_prime_UTR	1827300	1827374	.	+	.	Parent=Os11t0139500-03
Chr11	irgsp1_rep	CDS	1827375	1827971	.	+	0	Parent=Os11t0139500-03
Chr11	irgsp1_rep	three_prime_UTR	1827972	1828276	.	+	.	Parent=Os11t0139500-03
Chr11	irgsp1_rep	mRNA	1829118	1831992	.	-	.	ID=Os11t0139550-00;Name=Os11t0139550-00;Locus_id=Os11g0139550;Note=C-5 cytosine-specific DNA methylase%2C active site domain containing protein.;Transcript_evidence=AK106901 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;Expression=AK106901;TENOR=Os11t0139550-00;KEGG=Os11t0139550-00
Chr11	irgsp1_rep	five_prime_UTR	1831730	1831992	.	-	.	Parent=Os11t0139550-00
Chr11	irgsp1_rep	CDS	1830808	1831729	.	-	0	Parent=Os11t0139550-00
Chr11	irgsp1_rep	CDS	1830233	1830789	.	-	2	Parent=Os11t0139550-00
Chr11	irgsp1_rep	three_prime_UTR	1830162	1830232	.	-	.	Parent=Os11t0139550-00
Chr11	irgsp1_rep	three_prime_UTR	1829943	1830147	.	-	.	Parent=Os11t0139550-00
Chr11	irgsp1_rep	three_prime_UTR	1829118	1829195	.	-	.	Parent=Os11t0139550-00
Chr11	irgsp1_rep	mRNA	1829913	1832347	.	+	.	ID=Os11t0139600-01;Name=Os11t0139600-01;Locus_id=Os11g0139600;CGSNL Gene Symbol=GRAS42;CGSNL Gene Name=GRAS PROTEIN 42;Oryzabase Gene Symbol Synonym(s)=OsGRAS-42%2C OsGRAS42%2C GRAS-42;Oryzabase Gene Name Synonym(s)=GRAS protein 42;Note=Similar to GRAS family transcription factor containing protein.;Transcript_evidence=AK073051 (DDBJ%2C Best hit);ORF_evidence=Q2QY14 (UniProt);InterPro=Transcription factor GRAS (IPR005202);NIAS_FLcDNA=J033000F22;Oryzabase=22798;TENOR=Os11t0139600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	1829913	1830382	.	+	.	Parent=Os11t0139600-01
Chr11	irgsp1_rep	CDS	1830383	1832134	.	+	0	Parent=Os11t0139600-01
Chr11	irgsp1_rep	three_prime_UTR	1832135	1832347	.	+	.	Parent=Os11t0139600-01
Chr11	irgsp1_rep	mRNA	1835867	1837930	.	-	.	ID=Os11t0139700-01;Name=Os11t0139700-01;Locus_id=Os11g0139700;Note=Hypothetical conserved gene.;Transcript_evidence=AK067080 (DDBJ%2C Best hit);ORF_evidence=Q2RAS5 (UniProt);NIAS_FLcDNA=J013096P10;Expression=AK067080;TENOR=Os11t0139700-01;KEGG=Os11t0139700-01
Chr11	irgsp1_rep	five_prime_UTR	1837818	1837930	.	-	.	Parent=Os11t0139700-01
Chr11	irgsp1_rep	CDS	1837731	1837817	.	-	0	Parent=Os11t0139700-01
Chr11	irgsp1_rep	three_prime_UTR	1835867	1837730	.	-	.	Parent=Os11t0139700-01
Chr11	irgsp1_rep	mRNA	1842373	1842700	.	-	.	ID=Os11t0139800-01;Name=Os11t0139800-01;Locus_id=Os11g0139800;Note=Non-protein coding transcript.;Transcript_evidence=AK059337 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-026-B01;TENOR=Os11t0139800-01
Chr11	irgsp1_rep	exon	1842373	1842700	.	-	.	Parent=Os11t0139800-01
Chr11	irgsp1_rep	mRNA	1838856	1847380	.	-	.	ID=Os11t0139900-00;Name=Os11t0139900-00;Locus_id=Os11g0139900;Note=Mitochondrial glycoprotein domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001176341.1 (RefSeq);GO=Cellular Component: mitochondrial matrix (GO:0005759);InterPro=Mitochondrial glycoprotein (IPR003428),AIG2-like (IPR009288),Butirosin biosynthesis%2C BtrG-like (IPR013024);TENOR=Os11t0139900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	1847335	1847380	.	-	0	Parent=Os11t0139900-00
Chr11	irgsp1_rep	CDS	1843117	1843400	.	-	2	Parent=Os11t0139900-00
Chr11	irgsp1_rep	CDS	1842847	1843025	.	-	0	Parent=Os11t0139900-00
Chr11	irgsp1_rep	CDS	1838856	1839090	.	-	1	Parent=Os11t0139900-00
Chr11	irgsp1_rep	mRNA	1850202	1853976	.	-	.	ID=Os11t0140100-01;Name=Os11t0140100-01;Locus_id=Os11g0140100;Note=Similar to mitochondrial glycoprotein.;Transcript_evidence=AK064682 (DDBJ%2C Best hit);ORF_evidence=NP_001151394.1 (RefSeq);GO=Cellular Component: mitochondrial matrix (GO:0005759);InterPro=Mitochondrial glycoprotein (IPR003428);NIAS_FLcDNA=002-116-A09;Expression=AK064682;TENOR=Os11t0140100-01;KEGG=Os11t0140100-01
Chr11	irgsp1_rep	five_prime_UTR	1853962	1853976	.	-	.	Parent=Os11t0140100-01
Chr11	irgsp1_rep	CDS	1853821	1853961	.	-	0	Parent=Os11t0140100-01
Chr11	irgsp1_rep	CDS	1853428	1853753	.	-	0	Parent=Os11t0140100-01
Chr11	irgsp1_rep	CDS	1850643	1850655	.	-	1	Parent=Os11t0140100-01
Chr11	irgsp1_rep	three_prime_UTR	1850202	1850642	.	-	.	Parent=Os11t0140100-01
Chr11	irgsp1_rep	mRNA	1849546	1853976	.	-	.	ID=Os11t0140100-02;Name=Os11t0140100-02;Locus_id=Os11g0140100;Note=Mitochondrial glycoprotein family protein.;Transcript_evidence=AK067823 (DDBJ%2C Best hit);ORF_evidence=B7E9V8 (UniProt);GO=Cellular Component: mitochondrial matrix (GO:0005759);InterPro=Mitochondrial glycoprotein (IPR003428);NIAS_FLcDNA=J013120E15;Expression=AK067823;TENOR=Os11t0140100-02;KEGG=Os11t0140100-02
Chr11	irgsp1_rep	five_prime_UTR	1853962	1853976	.	-	.	Parent=Os11t0140100-02
Chr11	irgsp1_rep	CDS	1853821	1853961	.	-	0	Parent=Os11t0140100-02
Chr11	irgsp1_rep	CDS	1853428	1853753	.	-	0	Parent=Os11t0140100-02
Chr11	irgsp1_rep	CDS	1849752	1849917	.	-	1	Parent=Os11t0140100-02
Chr11	irgsp1_rep	three_prime_UTR	1849546	1849751	.	-	.	Parent=Os11t0140100-02
Chr11	irgsp1_rep	mRNA	1858958	1859791	.	-	.	ID=Os11t0140300-01;Name=Os11t0140300-01;Locus_id=Os11g0140300;Note=Hypothetical protein.;Transcript_evidence=AK063105 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-111-D01;Expression=AK063105;TENOR=Os11t0140300-01;KEGG=Os11t0140300-01
Chr11	irgsp1_rep	five_prime_UTR	1859604	1859791	.	-	.	Parent=Os11t0140300-01
Chr11	irgsp1_rep	CDS	1859349	1859603	.	-	0	Parent=Os11t0140300-01
Chr11	irgsp1_rep	three_prime_UTR	1858958	1859348	.	-	.	Parent=Os11t0140300-01
Chr11	irgsp1_rep	mRNA	1859333	1865302	.	+	.	ID=Os11t0140400-01;Name=Os11t0140400-01;Locus_id=Os11g0140400;CGSNL Gene Symbol=ACA4;CGSNL Gene Name=CA2+-ATPASE 4;Oryzabase Gene Symbol Synonym(s)=osACA4%2C OsACA8%2C OsACA4;Oryzabase Gene Name Synonym(s)=Ca2+ P-Type ATPase 4%2C vacuolar Ca2+-ATPase 4;Note=Similar to autoinhibited calcium ATPase.;Transcript_evidence=AK242630 (DDBJ%2C Best hit);ORF_evidence=XP_002308011.1 (RefSeq);GO=Biological Process: ATP biosynthetic process (GO:0006754),Biological Process: cation transport (GO:0006812),Biological Process: calcium ion transmembrane transport (GO:0070588),Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: calcium-transporting ATPase activity (GO:0005388),Molecular Function: calmodulin binding (GO:0005516),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C catalyzing transmembrane movement of substances (GO:0016820),Molecular Function: metal ion binding (GO:0046872);InterPro=ATPase%2C P-type%2C H+ transporting proton pump (IPR000695),ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),ATPase%2C P-type cation-transporter%2C N-terminal (IPR004014),ATPase%2C P-type cation-transporter%2C C-terminal (IPR006068),ATPase%2C P-type%2C calcium-transporting%2C PMCA-type (IPR006408),ATPase%2C P-type%2C ATPase-associated domain (IPR008250),ATPase%2C P-type phosphorylation site (IPR018303),HAD-like domain (IPR023214),ATPase%2C P-type%2C  transmembrane domain (IPR023298),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C  P-type%2C cytoplasmic transduction domain A (IPR023300),ATPase%2C cation-transporting%2C domain N (IPR023306),Calcium-transporting ATPase%2C N-terminal autoinhibitory domain (IPR024750);NIAS_FLcDNA=J090022D11;Oryzabase=13236;TENOR=Os11t0140400-01;KEGG=Os11t0140400-01 (EC:3.6.3.8)
Chr11	irgsp1_rep	five_prime_UTR	1859333	1859361	.	+	.	Parent=Os11t0140400-01
Chr11	irgsp1_rep	CDS	1859362	1859547	.	+	0	Parent=Os11t0140400-01
Chr11	irgsp1_rep	CDS	1861359	1861413	.	+	0	Parent=Os11t0140400-01
Chr11	irgsp1_rep	CDS	1861567	1863443	.	+	2	Parent=Os11t0140400-01
Chr11	irgsp1_rep	CDS	1863518	1863676	.	+	0	Parent=Os11t0140400-01
Chr11	irgsp1_rep	CDS	1863868	1864039	.	+	0	Parent=Os11t0140400-01
Chr11	irgsp1_rep	CDS	1864141	1864291	.	+	2	Parent=Os11t0140400-01
Chr11	irgsp1_rep	CDS	1864354	1864439	.	+	1	Parent=Os11t0140400-01
Chr11	irgsp1_rep	CDS	1864715	1864725	.	+	2	Parent=Os11t0140400-01
Chr11	irgsp1_rep	three_prime_UTR	1864726	1865302	.	+	.	Parent=Os11t0140400-01
Chr11	irgsp1_rep	mRNA	1863886	1864256	.	-	.	ID=Os11t0140450-00;Name=Os11t0140450-00;Locus_id=Os11g0140450;Note=Non-protein coding transcript.;Transcript_evidence=EU971904 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0140450-00
Chr11	irgsp1_rep	exon	1863886	1864256	.	-	.	Parent=Os11t0140450-00
Chr11	irgsp1_rep	mRNA	1869163	1872206	.	-	.	ID=Os11t0140600-01;Name=Os11t0140600-01;Locus_id=Os11g0140600;Note=EF-Hand type domain containing protein.;Transcript_evidence=AK103409 (DDBJ%2C Best hit);ORF_evidence=NP_001147282.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J033128E16;Expression=AK103409;TENOR=Os11t0140600-01;KEGG=Os11t0140600-01
Chr11	irgsp1_rep	five_prime_UTR	1872199	1872206	.	-	.	Parent=Os11t0140600-01
Chr11	irgsp1_rep	CDS	1871619	1872198	.	-	0	Parent=Os11t0140600-01
Chr11	irgsp1_rep	CDS	1870535	1870581	.	-	2	Parent=Os11t0140600-01
Chr11	irgsp1_rep	CDS	1870258	1870433	.	-	0	Parent=Os11t0140600-01
Chr11	irgsp1_rep	CDS	1869478	1869496	.	-	1	Parent=Os11t0140600-01
Chr11	irgsp1_rep	CDS	1869282	1869386	.	-	0	Parent=Os11t0140600-01
Chr11	irgsp1_rep	three_prime_UTR	1869163	1869281	.	-	.	Parent=Os11t0140600-01
Chr11	irgsp1_rep	mRNA	1879339	1883768	.	+	.	ID=Os11t0140700-01;Name=Os11t0140700-01;Locus_id=Os11g0140700;Note=Similar to Saccharopine dehydrogenase family protein%2C expressed.;Transcript_evidence=AK240637 (DDBJ%2C Best hit);ORF_evidence=Q2QY08 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Saccharopine dehydrogenase / Homospermidine synthase (IPR005097),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013047L22;TENOR=Os11t0140700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	1879339	1879888	.	+	.	Parent=Os11t0140700-01
Chr11	irgsp1_rep	CDS	1879889	1880018	.	+	0	Parent=Os11t0140700-01
Chr11	irgsp1_rep	CDS	1880167	1880249	.	+	2	Parent=Os11t0140700-01
Chr11	irgsp1_rep	CDS	1880370	1880459	.	+	0	Parent=Os11t0140700-01
Chr11	irgsp1_rep	three_prime_UTR	1880460	1880465	.	+	.	Parent=Os11t0140700-01
Chr11	irgsp1_rep	three_prime_UTR	1880799	1881075	.	+	.	Parent=Os11t0140700-01
Chr11	irgsp1_rep	three_prime_UTR	1881157	1883148	.	+	.	Parent=Os11t0140700-01
Chr11	irgsp1_rep	three_prime_UTR	1883245	1883324	.	+	.	Parent=Os11t0140700-01
Chr11	irgsp1_rep	three_prime_UTR	1883422	1883768	.	+	.	Parent=Os11t0140700-01
Chr11	irgsp1_rep	mRNA	1879355	1883741	.	+	.	ID=Os11t0140700-02;Name=Os11t0140700-02;Locus_id=Os11g0140700;Note=Similar to Saccharopine dehydrogenase family protein%2C expressed.;Transcript_evidence=AK287526 (DDBJ%2C Best hit);ORF_evidence=Q2QY08 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Saccharopine dehydrogenase / Homospermidine synthase (IPR005097),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J053097L10;TENOR=Os11t0140700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	1879355	1879888	.	+	.	Parent=Os11t0140700-02
Chr11	irgsp1_rep	CDS	1879889	1880018	.	+	0	Parent=Os11t0140700-02
Chr11	irgsp1_rep	CDS	1880167	1880249	.	+	2	Parent=Os11t0140700-02
Chr11	irgsp1_rep	CDS	1880339	1880465	.	+	0	Parent=Os11t0140700-02
Chr11	irgsp1_rep	CDS	1880799	1880862	.	+	2	Parent=Os11t0140700-02
Chr11	irgsp1_rep	CDS	1880998	1881034	.	+	1	Parent=Os11t0140700-02
Chr11	irgsp1_rep	three_prime_UTR	1881035	1881075	.	+	.	Parent=Os11t0140700-02
Chr11	irgsp1_rep	three_prime_UTR	1881157	1881241	.	+	.	Parent=Os11t0140700-02
Chr11	irgsp1_rep	three_prime_UTR	1881355	1881445	.	+	.	Parent=Os11t0140700-02
Chr11	irgsp1_rep	three_prime_UTR	1881784	1881885	.	+	.	Parent=Os11t0140700-02
Chr11	irgsp1_rep	three_prime_UTR	1883067	1883148	.	+	.	Parent=Os11t0140700-02
Chr11	irgsp1_rep	three_prime_UTR	1883245	1883324	.	+	.	Parent=Os11t0140700-02
Chr11	irgsp1_rep	three_prime_UTR	1883422	1883741	.	+	.	Parent=Os11t0140700-02
Chr11	irgsp1_rep	mRNA	1884036	1887440	.	-	.	ID=Os11t0140800-01;Name=Os11t0140800-01;Locus_id=Os11g0140800;Note=Similar to CytoChrome C biogenesis protein transmembrane region containing protein%2C expressed.;Transcript_evidence=AK242328 (DDBJ%2C Best hit);ORF_evidence=Q2RAR6 (UniProt);GO=Biological Process: cytoChrome complex assembly (GO:0017004),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: membrane (GO:0016020);InterPro=CytoChrome c assembly protein%2C transmembrane domain (IPR003834);NIAS_FLcDNA=J075198C02;TENOR=Os11t0140800-01;KEGG=Os11t0140800-01
Chr11	irgsp1_rep	five_prime_UTR	1887411	1887440	.	-	.	Parent=Os11t0140800-01
Chr11	irgsp1_rep	CDS	1887161	1887410	.	-	0	Parent=Os11t0140800-01
Chr11	irgsp1_rep	CDS	1887003	1887058	.	-	2	Parent=Os11t0140800-01
Chr11	irgsp1_rep	CDS	1886633	1886760	.	-	0	Parent=Os11t0140800-01
Chr11	irgsp1_rep	CDS	1886433	1886518	.	-	1	Parent=Os11t0140800-01
Chr11	irgsp1_rep	CDS	1886299	1886330	.	-	2	Parent=Os11t0140800-01
Chr11	irgsp1_rep	CDS	1885977	1886138	.	-	0	Parent=Os11t0140800-01
Chr11	irgsp1_rep	CDS	1885661	1885733	.	-	0	Parent=Os11t0140800-01
Chr11	irgsp1_rep	CDS	1885460	1885560	.	-	2	Parent=Os11t0140800-01
Chr11	irgsp1_rep	CDS	1885093	1885185	.	-	0	Parent=Os11t0140800-01
Chr11	irgsp1_rep	CDS	1884873	1884919	.	-	0	Parent=Os11t0140800-01
Chr11	irgsp1_rep	CDS	1884302	1884377	.	-	1	Parent=Os11t0140800-01
Chr11	irgsp1_rep	three_prime_UTR	1884036	1884301	.	-	.	Parent=Os11t0140800-01
Chr11	irgsp1_rep	mRNA	1887131	1892676	.	+	.	ID=Os11t0140900-01;Name=Os11t0140900-01;Locus_id=Os11g0140900;Note=Conserved hypothetical protein.;Transcript_evidence=AK287804 (DDBJ%2C Best hit);ORF_evidence=NP_001176343.1 (RefSeq);NIAS_FLcDNA=J065177O17;TENOR=Os11t0140900-01;KEGG=Os11t0140900-01
Chr11	irgsp1_rep	five_prime_UTR	1887131	1887774	.	+	.	Parent=Os11t0140900-01
Chr11	irgsp1_rep	CDS	1887775	1887865	.	+	0	Parent=Os11t0140900-01
Chr11	irgsp1_rep	CDS	1891725	1892458	.	+	2	Parent=Os11t0140900-01
Chr11	irgsp1_rep	three_prime_UTR	1892459	1892676	.	+	.	Parent=Os11t0140900-01
Chr11	irgsp1_rep	mRNA	1894738	1898886	.	+	.	ID=Os11t0141000-01;Name=Os11t0141000-01;Locus_id=Os11g0141000;Note=Similar to PP2A regulatory subunit-like protein.;Transcript_evidence=AK058901 (DDBJ%2C Best hit);ORF_evidence=Q84PC7 (UniProt);GO=Biological Process: regulation of signal transduction (GO:0009966);InterPro=TAP42-like protein (IPR007304);NIAS_FLcDNA=001-008-A08;Expression=AK058901;TENOR=Os11t0141000-01;KEGG=Os11t0141000-01
Chr11	irgsp1_rep	five_prime_UTR	1894738	1894853	.	+	.	Parent=Os11t0141000-01
Chr11	irgsp1_rep	CDS	1894854	1894941	.	+	0	Parent=Os11t0141000-01
Chr11	irgsp1_rep	CDS	1894992	1895014	.	+	2	Parent=Os11t0141000-01
Chr11	irgsp1_rep	CDS	1895118	1895240	.	+	0	Parent=Os11t0141000-01
Chr11	irgsp1_rep	CDS	1895353	1895439	.	+	0	Parent=Os11t0141000-01
Chr11	irgsp1_rep	CDS	1895577	1895681	.	+	0	Parent=Os11t0141000-01
Chr11	irgsp1_rep	CDS	1895869	1896030	.	+	0	Parent=Os11t0141000-01
Chr11	irgsp1_rep	CDS	1896605	1896640	.	+	0	Parent=Os11t0141000-01
Chr11	irgsp1_rep	CDS	1896770	1896841	.	+	0	Parent=Os11t0141000-01
Chr11	irgsp1_rep	CDS	1897446	1897723	.	+	0	Parent=Os11t0141000-01
Chr11	irgsp1_rep	CDS	1898447	1898473	.	+	1	Parent=Os11t0141000-01
Chr11	irgsp1_rep	CDS	1898621	1898681	.	+	1	Parent=Os11t0141000-01
Chr11	irgsp1_rep	three_prime_UTR	1898682	1898886	.	+	.	Parent=Os11t0141000-01
Chr11	irgsp1_rep	mRNA	1894742	1898886	.	+	.	ID=Os11t0141000-02;Name=Os11t0141000-02;Locus_id=Os11g0141000;Note=Similar to PP2A regulatory subunit-like protein.;Transcript_evidence=AK070934 (DDBJ%2C Best hit);ORF_evidence=Q84PC7 (UniProt);GO=Biological Process: regulation of signal transduction (GO:0009966);InterPro=TAP42-like protein (IPR007304);NIAS_FLcDNA=J023064K13;Expression=AK070934;TENOR=Os11t0141000-02;KEGG=Os11t0141000-02
Chr11	irgsp1_rep	five_prime_UTR	1894742	1894855	.	+	.	Parent=Os11t0141000-02
Chr11	irgsp1_rep	CDS	1894856	1895014	.	+	0	Parent=Os11t0141000-02
Chr11	irgsp1_rep	CDS	1895118	1895240	.	+	0	Parent=Os11t0141000-02
Chr11	irgsp1_rep	CDS	1895353	1895439	.	+	0	Parent=Os11t0141000-02
Chr11	irgsp1_rep	CDS	1895577	1895681	.	+	0	Parent=Os11t0141000-02
Chr11	irgsp1_rep	CDS	1895869	1896030	.	+	0	Parent=Os11t0141000-02
Chr11	irgsp1_rep	CDS	1896605	1896640	.	+	0	Parent=Os11t0141000-02
Chr11	irgsp1_rep	CDS	1896770	1896841	.	+	0	Parent=Os11t0141000-02
Chr11	irgsp1_rep	CDS	1897446	1897723	.	+	0	Parent=Os11t0141000-02
Chr11	irgsp1_rep	CDS	1898447	1898681	.	+	1	Parent=Os11t0141000-02
Chr11	irgsp1_rep	three_prime_UTR	1898682	1898886	.	+	.	Parent=Os11t0141000-02
Chr11	irgsp1_rep	mRNA	1901250	1902469	.	-	.	ID=Os11t0141100-00;Name=Os11t0141100-00;Locus_id=Os11g0141100;Note=Hypothetical conserved gene.;Transcript_evidence=AK243653 (DDBJ%2C Secondary hit);ORF_evidence=Q2RAR0 (UniProt);GO=Molecular Function: sulfotransferase activity (GO:0008146);InterPro=Sulfotransferase domain (IPR000863);TENOR=Os11t0141100-00;KEGG=Os11t0141100-00
Chr11	irgsp1_rep	five_prime_UTR	1902445	1902469	.	-	.	Parent=Os11t0141100-00
Chr11	irgsp1_rep	CDS	1901776	1902444	.	-	0	Parent=Os11t0141100-00
Chr11	irgsp1_rep	three_prime_UTR	1901250	1901775	.	-	.	Parent=Os11t0141100-00
Chr11	irgsp1_rep	mRNA	1917488	1921931	.	-	.	ID=Os11t0141333-00;Name=Os11t0141333-00;Locus_id=Os11g0141333;Note=Similar to Sulfotransferase domain containing protein.;Transcript_evidence=FP093881 (DDBJ);ORF_evidence=Q2RAR0 (UniProt);GO=Molecular Function: sulfotransferase activity (GO:0008146);InterPro=Sulfotransferase domain (IPR000863);TENOR=Os11t0141333-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	1921293	1921931	.	-	0	Parent=Os11t0141333-00
Chr11	irgsp1_rep	CDS	1917488	1917904	.	-	0	Parent=Os11t0141333-00
Chr11	irgsp1_rep	mRNA	1931458	1932198	.	+	.	ID=Os11t0141400-01;Name=Os11t0141400-01;Locus_id=Os11g0141400;Note=Similar to EF hand family protein%2C expressed.;Transcript_evidence=AK070778 (DDBJ%2C Best hit);ORF_evidence=Q2RAQ9 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J023069E14;TENOR=Os11t0141400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	1931458	1931458	.	+	.	Parent=Os11t0141400-01
Chr11	irgsp1_rep	CDS	1931459	1932025	.	+	0	Parent=Os11t0141400-01
Chr11	irgsp1_rep	three_prime_UTR	1932026	1932198	.	+	.	Parent=Os11t0141400-01
Chr11	irgsp1_rep	mRNA	1933987	1935465	.	-	.	ID=Os11t0141500-00;Name=Os11t0141500-00;Locus_id=Os11g0141500;Note=Similar to GRAS family transcription factor containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2RAQ8 (UniProt);InterPro=Transcription factor GRAS (IPR005202);TENOR=Os11t0141500-00;KEGG=Os11t0141500-00
Chr11	irgsp1_rep	CDS	1933987	1935465	.	-	0	Parent=Os11t0141500-00
Chr11	irgsp1_rep	mRNA	1936207	1939840	.	-	.	ID=Os11t0141550-01;Name=Os11t0141550-01;Locus_id=Os11g0141550;CGSNL Gene Symbol=GRAS43;CGSNL Gene Name=GRAS PROTEIN 43;Oryzabase Gene Symbol Synonym(s)=OsGRAS-43%2C OsGRAS43%2C GRAS-43;Oryzabase Gene Name Synonym(s)=GRAS protein 43;Note=Hypothetical conserved gene.;Transcript_evidence=AK242794 (DDBJ%2C Best hit);ORF_evidence=Q2QXZ6 (UniProt);InterPro=Transcription factor GRAS (IPR005202);NIAS_FLcDNA=J090058A05;Oryzabase=22799;TENOR=Os11t0141550-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	1938559	1939840	.	-	.	Parent=Os11t0141550-01
Chr11	irgsp1_rep	CDS	1938169	1938558	.	-	0	Parent=Os11t0141550-01
Chr11	irgsp1_rep	three_prime_UTR	1936207	1938168	.	-	.	Parent=Os11t0141550-01
Chr11	irgsp1_rep	mRNA	1942620	1944140	.	-	.	ID=Os11t0141700-00;Name=Os11t0141700-00;Locus_id=Os11g0141700;CGSNL Gene Symbol=GRAS44;CGSNL Gene Name=GRAS PROTEIN 44;Oryzabase Gene Symbol Synonym(s)=OsGRAS-44%2C OsGRAS44%2C GRAS-44;Oryzabase Gene Name Synonym(s)=GRAS protein 44;Note=Similar to GRAS family transcription factor containing protein.;Transcript_evidence=EU950610 (DDBJ);ORF_evidence=Q2RAQ6 (UniProt);InterPro=Transcription factor GRAS (IPR005202);Oryzabase=22800;TENOR=Os11t0141700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	1942620	1944140	.	-	0	Parent=Os11t0141700-00
Chr11	irgsp1_rep	mRNA	1946099	1946770	.	-	.	ID=Os11t0141800-01;Name=Os11t0141800-01;Locus_id=Os11g0141800;Note=Conserved hypothetical protein.;Transcript_evidence=AK059193 (DDBJ%2C Best hit);ORF_evidence=Q6YX19 (UniProt);NIAS_FLcDNA=001-023-H10;TENOR=Os11t0141800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	1946673	1946770	.	-	.	Parent=Os11t0141800-01
Chr11	irgsp1_rep	CDS	1946334	1946672	.	-	0	Parent=Os11t0141800-01
Chr11	irgsp1_rep	three_prime_UTR	1946099	1946333	.	-	.	Parent=Os11t0141800-01
Chr11	irgsp1_rep	mRNA	1951562	1954600	.	+	.	ID=Os11t0141900-01;Name=Os11t0141900-01;Locus_id=Os11g0141900;RAP-DB Gene Symbol Synonym(s)=OsBOP2%2C NH5;RAP-DB Gene Name Synonym(s)=BLADE-ON-PETIOLE2;Oryzabase Gene Symbol Synonym(s)=NH5%2C OsNH5;Oryzabase Gene Name Synonym(s)=NPR1 homologue 5;Note=BTB/POX VIRUS AND ZINC FINGER (POZ) domain and ankyrin repeats containing protein%2C Regulator of proximal-distal patterning of leaves;Transcript_evidence=HM991172 (Dongjin),Inferred from literature;ORF_evidence=Q2RAQ5;GO=Molecular Function: protein binding (GO:0005515);InterPro=SKP1/BTB/POZ domain superfamily (IPR011333),Ankyrin repeat-containing domain superfamily (IPR036770),BTB/POZ domain (IPR000210),Regulatory protein NPR%2C central domain (IPR024228),Ankyrin repeat-containing domain (IPR020683),Ankyrin repeat (IPR002110);Manual Curation=February 12%2C 2019;Literature_PMID=24919709,30728357;Oryzabase=23598;TENOR=Os11t0141900-00
Chr11	irgsp1_rep	five_prime_UTR	1951562	1951740	.	+	.	Parent=Os11t0141900-01
Chr11	irgsp1_rep	CDS	1951741	1952268	.	+	0	Parent=Os11t0141900-01
Chr11	irgsp1_rep	CDS	1953237	1954193	.	+	0	Parent=Os11t0141900-01
Chr11	irgsp1_rep	three_prime_UTR	1954194	1954600	.	+	.	Parent=Os11t0141900-01
Chr11	irgsp1_rep	mRNA	1953118	1954266	.	-	.	ID=Os11t0142101-00;Name=Os11t0142101-00;Locus_id=Os11g0142101;Note=Hypothetical gene.;Transcript_evidence=AK107475 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;Expression=AK107475;TENOR=Os11t0142101-00;KEGG=Os11t0142101-00
Chr11	irgsp1_rep	five_prime_UTR	1954169	1954266	.	-	.	Parent=Os11t0142101-00
Chr11	irgsp1_rep	CDS	1953635	1954168	.	-	0	Parent=Os11t0142101-00
Chr11	irgsp1_rep	three_prime_UTR	1953118	1953634	.	-	.	Parent=Os11t0142101-00
Chr11	irgsp1_rep	mRNA	1984616	1985126	.	+	.	ID=Os11t0142300-00;Name=Os11t0142300-00;Locus_id=Os11g0142300;Note=Similar to cDNA clone:J013000A24%2C full insert sequence.;Transcript_evidence=CU406953 (DDBJ%2C Best hit);ORF_evidence=GeneMark;InterPro=Six-bladed beta-propeller%2C TolB-like (IPR011042);TENOR=Os11t0142300-00;KEGG=Os11t0142300-00
Chr11	irgsp1_rep	CDS	1984616	1984954	.	+	0	Parent=Os11t0142300-00
Chr11	irgsp1_rep	three_prime_UTR	1984955	1985126	.	+	.	Parent=Os11t0142300-00
Chr11	irgsp1_rep	mRNA	1986490	1988373	.	+	.	ID=Os11t0142400-01;Name=Os11t0142400-01;Locus_id=Os11g0142400;Oryzabase Gene Symbol Synonym(s)=OsSTRL20%2C STRL20;Oryzabase Gene Name Synonym(s)=STR-like 20;Note=Similar to Strictosidine synthase family protein%2C expressed.;Transcript_evidence=AK067423 (DDBJ%2C Best hit);ORF_evidence=Q2QXZ1 (UniProt);InterPro=Six-bladed beta-propeller%2C TolB-like (IPR011042);NIAS_FLcDNA=J013105O10;Oryzabase=21800;TENOR=Os11t0142400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	1986490	1986527	.	+	.	Parent=Os11t0142400-01
Chr11	irgsp1_rep	CDS	1986528	1986803	.	+	0	Parent=Os11t0142400-01
Chr11	irgsp1_rep	three_prime_UTR	1986804	1987506	.	+	.	Parent=Os11t0142400-01
Chr11	irgsp1_rep	three_prime_UTR	1987649	1988373	.	+	.	Parent=Os11t0142400-01
Chr11	irgsp1_rep	mRNA	1989143	1995037	.	+	.	ID=Os11t0142500-01;Name=Os11t0142500-01;Locus_id=Os11g0142500;RAP-DB Gene Symbol Synonym(s)=OsIPMS1;RAP-DB Gene Name Synonym(s)=Isopropylmalate synthase 1;CGSNL Gene Symbol=IPMS1;CGSNL Gene Name=ISOPROPYLMALATE SYNTHASE 1;Oryzabase Gene Symbol Synonym(s)=OsIPMS1;Oryzabase Gene Name Synonym(s)=isopropylmalate synthase 1;Note=Isopropylmalate synthase%2C Regulation of seed vigour;Transcript_evidence=AK066890 (Secondary hit);ORF_evidence=Q2RAP8;GO=Biological Process: leucine biosynthetic process (GO:0009098),Biological Process: carboxylic acid metabolic process (GO:0019752),Molecular Function: catalytic activity (GO:0003824),Molecular Function: 2-isopropylmalate synthase activity (GO:0003852),Molecular Function: transferase activity%2C transferring acyl groups%2C acyl groups converted into alkyl on transfer (GO:0046912);InterPro=Aldolase-type TIM barrel (IPR013785),2-isopropylmalate synthase LeuA%2C allosteric (dimerisation) domain  superfamily (IPR036230),2-isopropylmalate synthase%2C bacterial-type (IPR005671),Pyruvate carboxyltransferase (IPR000891),2-isopropylmalate synthase LeuA%2C allosteric (dimerisation) domain (IPR013709),Alpha-isopropylmalate/homocitrate synthase%2C conserved site (IPR002034);Manual Curation=July 24%2C 2018;Literature_PMID=29947463;Oryzabase=22456;Expression=AK066890;TENOR=Os11t0142500-00;KEGG=Os11t0142500-00 (EC:2.3.3.13)
Chr11	irgsp1_rep	five_prime_UTR	1989143	1989346	.	+	.	Parent=Os11t0142500-01
Chr11	irgsp1_rep	CDS	1989347	1990068	.	+	0	Parent=Os11t0142500-01
Chr11	irgsp1_rep	CDS	1991450	1991663	.	+	1	Parent=Os11t0142500-01
Chr11	irgsp1_rep	CDS	1991738	1991818	.	+	0	Parent=Os11t0142500-01
Chr11	irgsp1_rep	CDS	1991956	1992045	.	+	0	Parent=Os11t0142500-01
Chr11	irgsp1_rep	CDS	1992147	1992233	.	+	0	Parent=Os11t0142500-01
Chr11	irgsp1_rep	CDS	1992720	1992820	.	+	0	Parent=Os11t0142500-01
Chr11	irgsp1_rep	CDS	1993383	1993416	.	+	1	Parent=Os11t0142500-01
Chr11	irgsp1_rep	CDS	1993508	1993582	.	+	0	Parent=Os11t0142500-01
Chr11	irgsp1_rep	CDS	1993695	1993778	.	+	0	Parent=Os11t0142500-01
Chr11	irgsp1_rep	CDS	1993856	1993990	.	+	0	Parent=Os11t0142500-01
Chr11	irgsp1_rep	CDS	1994352	1994494	.	+	0	Parent=Os11t0142500-01
Chr11	irgsp1_rep	CDS	1994627	1994768	.	+	1	Parent=Os11t0142500-01
Chr11	irgsp1_rep	three_prime_UTR	1994769	1994855	.	+	.	Parent=Os11t0142500-01
Chr11	irgsp1_rep	three_prime_UTR	1994877	1995037	.	+	.	Parent=Os11t0142500-01
Chr11	irgsp1_rep	mRNA	1998186	1998345	.	-	.	ID=Os11t0142725-00;Name=Os11t0142725-00;Locus_id=Os11g0142725;Note=Non-protein coding transcript.;Transcript_evidence=EU947580 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0142725-00
Chr11	irgsp1_rep	exon	1998186	1998345	.	-	.	Parent=Os11t0142725-00
Chr11	irgsp1_rep	mRNA	1998790	1999485	.	+	.	ID=Os11t0142800-00;Name=Os11t0142800-00;Locus_id=Os11g0142800;Note=Similar to Zinc finger%2C C3HC4 type family protein.;Transcript_evidence=AK358384 (DDBJ);ORF_evidence=Q2RAP6 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);TENOR=Os11t0142800-00
Chr11	irgsp1_rep	CDS	1998790	1999485	.	+	0	Parent=Os11t0142800-00
Chr11	irgsp1_rep	mRNA	2007030	2010116	.	-	.	ID=Os11t0143200-01;Name=Os11t0143200-01;Locus_id=Os11g0143200;CGSNL Gene Symbol=CPD1;CGSNL Gene Name=CPD1;Oryzabase Gene Symbol Synonym(s)=OsCPD1%2C CYP90A3%2C CYP90A3/OsCPD1;Oryzabase Gene Name Synonym(s)=brassinosteroid C-23 hydrozylase%2C CONSTITUTIVE PHOTOMORPHOGENESIS and DWARFISM 1%2C CytoChrome P450 90A3;Note=Similar to CytoChrome P450 90A1 (EC 1.14.-.-).;Transcript_evidence=AK240911 (DDBJ%2C Best hit);ORF_evidence=Q5CCK2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J065037E05;Oryzabase=9062;TENOR=Os11t0143200-01;KEGG=Os11t0143200-01
Chr11	irgsp1_rep	five_prime_UTR	2010059	2010116	.	-	.	Parent=Os11t0143200-01
Chr11	irgsp1_rep	CDS	2009345	2010058	.	-	0	Parent=Os11t0143200-01
Chr11	irgsp1_rep	CDS	2008924	2009202	.	-	0	Parent=Os11t0143200-01
Chr11	irgsp1_rep	CDS	2008188	2008274	.	-	0	Parent=Os11t0143200-01
Chr11	irgsp1_rep	CDS	2007944	2008022	.	-	0	Parent=Os11t0143200-01
Chr11	irgsp1_rep	CDS	2007719	2007825	.	-	2	Parent=Os11t0143200-01
Chr11	irgsp1_rep	CDS	2007468	2007604	.	-	0	Parent=Os11t0143200-01
Chr11	irgsp1_rep	CDS	2007224	2007326	.	-	1	Parent=Os11t0143200-01
Chr11	irgsp1_rep	three_prime_UTR	2007030	2007223	.	-	.	Parent=Os11t0143200-01
Chr11	irgsp1_rep	mRNA	2007244	2008277	.	+	.	ID=Os11t0143233-00;Name=Os11t0143233-00;Locus_id=Os11g0143233;Note=Hypothetical protein.;Transcript_evidence=BT064114 (DDBJ);ORF_evidence=GeneMark;TENOR=Os11t0143233-00
Chr11	irgsp1_rep	five_prime_UTR	2007244	2007244	.	+	.	Parent=Os11t0143233-00
Chr11	irgsp1_rep	CDS	2007245	2007314	.	+	0	Parent=Os11t0143233-00
Chr11	irgsp1_rep	CDS	2007459	2007591	.	+	2	Parent=Os11t0143233-00
Chr11	irgsp1_rep	CDS	2007693	2007738	.	+	1	Parent=Os11t0143233-00
Chr11	irgsp1_rep	three_prime_UTR	2007739	2008277	.	+	.	Parent=Os11t0143233-00
Chr11	irgsp1_rep	mRNA	2009009	2009833	.	+	.	ID=Os11t0143266-00;Name=Os11t0143266-00;Locus_id=Os11g0143266;Note=Hypothetical protein.;Transcript_evidence=FP093812 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0143266-00
Chr11	irgsp1_rep	five_prime_UTR	2009009	2009010	.	+	.	Parent=Os11t0143266-00
Chr11	irgsp1_rep	CDS	2009011	2009201	.	+	0	Parent=Os11t0143266-00
Chr11	irgsp1_rep	CDS	2009344	2009450	.	+	1	Parent=Os11t0143266-00
Chr11	irgsp1_rep	CDS	2009576	2009628	.	+	2	Parent=Os11t0143266-00
Chr11	irgsp1_rep	three_prime_UTR	2009629	2009833	.	+	.	Parent=Os11t0143266-00
Chr11	irgsp1_rep	mRNA	2013415	2015355	.	+	.	ID=Os11t0143300-01;Name=Os11t0143300-01;Locus_id=Os11g0143300;RAP-DB Gene Symbol Synonym(s)=RR9%2C OsRR9%2C Rra1%2C OsRRA1;RAP-DB Gene Name Synonym(s)=A-TYPE RESPONSE REGULATOR 9%2C A-TYPE response regulator 9%2C A-type RR 1;CGSNL Gene Symbol=RR9;CGSNL Gene Name=A-TYPE RESPONSE REGULATOR 9;Oryzabase Gene Symbol Synonym(s)=OsRR9%2C Rra1%2C OsRRA1%2C OsRR10%2C RR10;Oryzabase Gene Name Synonym(s)=A-TYPE response regulator 9%2C A-type RR 1;Note=A-type response regulator%2C Cytokinin signaling;Transcript_evidence=AK058585 (Genbank),AB249659 (Genbank),BR000256 (Genbank);ORF_evidence=Q2RAP3 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: two-component response regulator activity (GO:0000156);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),CheY-like superfamily (IPR011006);NIAS_FLcDNA=001-017-G01;Manual Curation=April 27%2C 2010;Literature_PMID=16919402,16472405,17293362;Oryzabase=8166;Expression=AK058585;TENOR=Os11t0143300-01;KEGG=Os11t0143300-01
Chr11	irgsp1_rep	five_prime_UTR	2013415	2013503	.	+	.	Parent=Os11t0143300-01
Chr11	irgsp1_rep	CDS	2013504	2013606	.	+	0	Parent=Os11t0143300-01
Chr11	irgsp1_rep	CDS	2013706	2013797	.	+	2	Parent=Os11t0143300-01
Chr11	irgsp1_rep	CDS	2013917	2013994	.	+	0	Parent=Os11t0143300-01
Chr11	irgsp1_rep	CDS	2014110	2014180	.	+	0	Parent=Os11t0143300-01
Chr11	irgsp1_rep	CDS	2014870	2015131	.	+	1	Parent=Os11t0143300-01
Chr11	irgsp1_rep	three_prime_UTR	2015132	2015355	.	+	.	Parent=Os11t0143300-01
Chr11	irgsp1_rep	mRNA	2013444	2015269	.	+	.	ID=Os11t0143300-02;Name=Os11t0143300-02;Locus_id=Os11g0143300;RAP-DB Gene Symbol Synonym(s)=OSRR9%2C OsRR9%2C A-type RR;RAP-DB Gene Name Synonym(s)=A-TYPE RESPONSE REGULATOR 9%2C A-type response regulator 9%2C A-TYPE response regulator 9;CGSNL Gene Symbol=RR9;CGSNL Gene Name=A-TYPE RESPONSE REGULATOR 9;Oryzabase Gene Symbol Synonym(s)=OsRR9%2C Rra1%2C OsRRA1%2C OsRR10%2C RR10;Oryzabase Gene Name Synonym(s)=A-TYPE response regulator 9%2C A-type RR 1;Note=A-type response regulator%2C Cytokinin signaling;Transcript_evidence=AK120926 (Genbank);ORF_evidence=Q2RAP2 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: two-component response regulator activity (GO:0000156);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),CheY-like superfamily (IPR011006);NIAS_FLcDNA=J023035P07;Manual Curation=April 27%2C 2010;Literature_PMID=16919402,16472405,17293362;Oryzabase=8166;Expression=AK120926;TENOR=Os11t0143300-02;KEGG=Os11t0143300-02
Chr11	irgsp1_rep	five_prime_UTR	2013444	2013503	.	+	.	Parent=Os11t0143300-02
Chr11	irgsp1_rep	CDS	2013504	2013606	.	+	0	Parent=Os11t0143300-02
Chr11	irgsp1_rep	CDS	2013685	2013797	.	+	2	Parent=Os11t0143300-02
Chr11	irgsp1_rep	CDS	2013917	2013994	.	+	0	Parent=Os11t0143300-02
Chr11	irgsp1_rep	CDS	2014110	2014180	.	+	0	Parent=Os11t0143300-02
Chr11	irgsp1_rep	CDS	2014870	2015131	.	+	1	Parent=Os11t0143300-02
Chr11	irgsp1_rep	three_prime_UTR	2015132	2015269	.	+	.	Parent=Os11t0143300-02
Chr11	irgsp1_rep	mRNA	2015315	2018150	.	-	.	ID=Os11t0143400-00;Name=Os11t0143400-00;Locus_id=Os11g0143400;Note=DNA-directed RNA polymerase%2C RPB5 subunit domain containing protein.;Transcript_evidence=AK366630 (DDBJ);ORF_evidence=Q2QXY2 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899);InterPro=RNA polymerase%2C subunit H/Rpb5 C-terminal (IPR000783),RNA polymerase%2C Rpb5%2C N-terminal (IPR005571);TENOR=Os11t0143400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	2017557	2018150	.	-	0	Parent=Os11t0143400-00
Chr11	irgsp1_rep	CDS	2016636	2016812	.	-	0	Parent=Os11t0143400-00
Chr11	irgsp1_rep	CDS	2016291	2016404	.	-	0	Parent=Os11t0143400-00
Chr11	irgsp1_rep	CDS	2015635	2015760	.	-	0	Parent=Os11t0143400-00
Chr11	irgsp1_rep	three_prime_UTR	2015531	2015634	.	-	.	Parent=Os11t0143400-00
Chr11	irgsp1_rep	three_prime_UTR	2015315	2015454	.	-	.	Parent=Os11t0143400-00
Chr11	irgsp1_rep	mRNA	2019766	2024207	.	-	.	ID=Os11t0143500-01;Name=Os11t0143500-01;Locus_id=Os11g0143500;Oryzabase Gene Name Synonym(s)="L-Galactono%2C 4-lactone dehydrogenase";Note=Similar to L-Galactono-1%2C4-lactone dehydrogenase.;Transcript_evidence=AK102697 (DDBJ%2C Best hit);ORF_evidence=Q2RAP0 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: D-arabinono-1%2C4-lactone oxidase activity (GO:0003885),Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: galactonolactone dehydrogenase activity (GO:0016633),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C oxygen as acceptor (GO:0016899),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=FAD linked oxidase%2C N-terminal (IPR006094),D-arabinono-1%2C4-lactone oxidase (IPR007173),Galactonolactone dehydrogenase (IPR010029),FAD-binding%2C type 2 (IPR016166),FAD-linked oxidase%2C FAD-binding%2C subdomain 2 (IPR016168),L-gulonolactone/D-arabinono-1%2C4-lactone oxidase (IPR023595);NIAS_FLcDNA=J033103H13;Oryzabase=20162;Expression=AK102697;TENOR=Os11t0143500-01;KEGG=Os11t0143500-01
Chr11	irgsp1_rep	five_prime_UTR	2024165	2024207	.	-	.	Parent=Os11t0143500-01
Chr11	irgsp1_rep	CDS	2023559	2024164	.	-	0	Parent=Os11t0143500-01
Chr11	irgsp1_rep	CDS	2022310	2022560	.	-	0	Parent=Os11t0143500-01
Chr11	irgsp1_rep	CDS	2022014	2022196	.	-	1	Parent=Os11t0143500-01
Chr11	irgsp1_rep	CDS	2021447	2021849	.	-	1	Parent=Os11t0143500-01
Chr11	irgsp1_rep	CDS	2020549	2020689	.	-	0	Parent=Os11t0143500-01
Chr11	irgsp1_rep	CDS	2020120	2020287	.	-	0	Parent=Os11t0143500-01
Chr11	irgsp1_rep	three_prime_UTR	2019766	2020119	.	-	.	Parent=Os11t0143500-01
Chr11	irgsp1_rep	mRNA	2024383	2025624	.	+	.	ID=Os11t0143600-00;Name=Os11t0143600-00;Locus_id=Os11g0143600;Note=Hypothetical conserved gene.;Transcript_evidence=EU966495 (DDBJ);ORF_evidence=A2ZHY1 (UniProt);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);TENOR=Os11t0143600-00;KEGG=Os11t0143600-00
Chr11	irgsp1_rep	five_prime_UTR	2024383	2024430	.	+	.	Parent=Os11t0143600-00
Chr11	irgsp1_rep	CDS	2024431	2025060	.	+	0	Parent=Os11t0143600-00
Chr11	irgsp1_rep	three_prime_UTR	2025061	2025624	.	+	.	Parent=Os11t0143600-00
Chr11	irgsp1_rep	mRNA	2027655	2029322	.	-	.	ID=Os11t0143700-00;Name=Os11t0143700-00;Locus_id=Os11g0143700;Note=Hypothetical conserved gene.;Transcript_evidence=EU968899 (DDBJ);ORF_evidence=A2ZBC8 (UniProt);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);TENOR=Os11t0143700-00;KEGG=Os11t0143700-00
Chr11	irgsp1_rep	CDS	2027808	2029322	.	-	0	Parent=Os11t0143700-00
Chr11	irgsp1_rep	three_prime_UTR	2027655	2027807	.	-	.	Parent=Os11t0143700-00
Chr11	irgsp1_rep	mRNA	2046112	2047192	.	+	.	ID=Os11t0144500-01;Name=Os11t0144500-01;Locus_id=Os11g0144500;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK067633 (DDBJ%2C Best hit);ORF_evidence=B8BJ28 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J013111A10;Expression=AK067633;TENOR=Os11t0144500-01;KEGG=Os11t0144500-01
Chr11	irgsp1_rep	five_prime_UTR	2046112	2046275	.	+	.	Parent=Os11t0144500-01
Chr11	irgsp1_rep	CDS	2046276	2046665	.	+	0	Parent=Os11t0144500-01
Chr11	irgsp1_rep	three_prime_UTR	2046666	2047192	.	+	.	Parent=Os11t0144500-01
Chr11	irgsp1_rep	mRNA	2056281	2059194	.	+	.	ID=Os11t0144900-01;Name=Os11t0144900-01;Locus_id=Os11g0144900;Note=Conserved hypothetical protein.;Transcript_evidence=AK120954 (DDBJ%2C Best hit);ORF_evidence=A2ZBD3 (UniProt);NIAS_FLcDNA=J023039E10;Expression=AK120954;TENOR=Os11t0144900-01;KEGG=Os11t0144900-01
Chr11	irgsp1_rep	five_prime_UTR	2056281	2056335	.	+	.	Parent=Os11t0144900-01
Chr11	irgsp1_rep	CDS	2056336	2058996	.	+	0	Parent=Os11t0144900-01
Chr11	irgsp1_rep	three_prime_UTR	2058997	2059194	.	+	.	Parent=Os11t0144900-01
Chr11	irgsp1_rep	mRNA	2057426	2058212	.	-	.	ID=Os11t0144950-00;Name=Os11t0144950-00;Locus_id=Os11g0144950;Note=Hypothetical protein.;Transcript_evidence=FP101342 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0144950-00
Chr11	irgsp1_rep	five_prime_UTR	2058091	2058212	.	-	.	Parent=Os11t0144950-00
Chr11	irgsp1_rep	CDS	2057906	2058090	.	-	0	Parent=Os11t0144950-00
Chr11	irgsp1_rep	CDS	2057742	2057811	.	-	1	Parent=Os11t0144950-00
Chr11	irgsp1_rep	three_prime_UTR	2057426	2057741	.	-	.	Parent=Os11t0144950-00
Chr11	irgsp1_rep	mRNA	2059411	2063380	.	-	.	ID=Os11t0145000-01;Name=Os11t0145000-01;Locus_id=Os11g0145000;Note=Similar to phosphatidylinositol-4-phosphate 5-kinase family protein.;Transcript_evidence=AK240649 (DDBJ%2C Best hit);ORF_evidence=NP_187453.1 (RefSeq);GO=Biological Process: phosphatidylinositol metabolic process (GO:0046488),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphatidylinositol phosphate kinase activity (GO:0016307),Molecular Function: 1-phosphatidylinositol-4-phosphate 5-kinase activity (GO:0016308);InterPro=Phosphatidylinositol-4-phosphate 5-kinase%2C core (IPR002498),MORN motif (IPR003409),Phosphatidylinositol-4-phosphate 5-kinase%2C core%2C subgroup (IPR016034),Phosphatidylinositol-4-phosphate 5-kinase%2C plant (IPR017163),Phosphatidylinositol-4-phosphate 5-kinase (IPR023610);NIAS_FLcDNA=J023084C20;TENOR=Os11t0145000-01;KEGG=Os11t0145000-01 (EC:2.7.1.68)
Chr11	irgsp1_rep	five_prime_UTR	2063284	2063380	.	-	.	Parent=Os11t0145000-01
Chr11	irgsp1_rep	CDS	2061977	2063283	.	-	0	Parent=Os11t0145000-01
Chr11	irgsp1_rep	CDS	2061666	2061833	.	-	1	Parent=Os11t0145000-01
Chr11	irgsp1_rep	CDS	2061295	2061460	.	-	1	Parent=Os11t0145000-01
Chr11	irgsp1_rep	CDS	2061094	2061210	.	-	0	Parent=Os11t0145000-01
Chr11	irgsp1_rep	CDS	2060808	2061001	.	-	0	Parent=Os11t0145000-01
Chr11	irgsp1_rep	CDS	2060542	2060637	.	-	1	Parent=Os11t0145000-01
Chr11	irgsp1_rep	CDS	2060382	2060435	.	-	1	Parent=Os11t0145000-01
Chr11	irgsp1_rep	CDS	2059726	2060017	.	-	1	Parent=Os11t0145000-01
Chr11	irgsp1_rep	three_prime_UTR	2059411	2059725	.	-	.	Parent=Os11t0145000-01
Chr11	irgsp1_rep	mRNA	2065763	2066533	.	-	.	ID=Os11t0145100-00;Name=Os11t0145100-00;Locus_id=Os11g0145100;Note=DTW domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001065728.1 (RefSeq);InterPro=DTW (IPR005636);TENOR=Os11t0145100-00;KEGG=Os11t0145100-00
Chr11	irgsp1_rep	CDS	2065763	2066533	.	-	0	Parent=Os11t0145100-00
Chr11	irgsp1_rep	mRNA	2067852	2069428	.	-	.	ID=Os11t0145200-01;Name=Os11t0145200-01;Locus_id=Os11g0145200;CGSNL Gene Symbol=UGT75E1;CGSNL Gene Name=UDP-GLUCOSE-DEPENDENT GLYCOSYLTRANSFERASE 75E1;Oryzabase Gene Symbol Synonym(s)=OsUGT75E1;Oryzabase Gene Name Synonym(s)=UDP-glucose-dependent glycosyltransferase 75E1;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK107669 (DDBJ%2C Best hit);ORF_evidence=C4MF57 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=002-131-H07;Oryzabase=21821;Expression=AK107669;TENOR=Os11t0145200-01;KEGG=Os11t0145200-01
Chr11	irgsp1_rep	five_prime_UTR	2069352	2069428	.	-	.	Parent=Os11t0145200-01
Chr11	irgsp1_rep	CDS	2067903	2069351	.	-	0	Parent=Os11t0145200-01
Chr11	irgsp1_rep	three_prime_UTR	2067852	2067902	.	-	.	Parent=Os11t0145200-01
Chr11	irgsp1_rep	mRNA	2074609	2077162	.	+	.	ID=Os11t0145400-01;Name=Os11t0145400-01;Locus_id=Os11g0145400;Note=Similar to GRF zinc finger family protein.;Transcript_evidence=AK242499 (DDBJ%2C Best hit);ORF_evidence=Q2QXT9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin (IPR000626),Ubiquitin supergroup (IPR019955);NIAS_FLcDNA=J080308D02;TENOR=Os11t0145400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	2074609	2074691	.	+	.	Parent=Os11t0145400-01
Chr11	irgsp1_rep	CDS	2074692	2074943	.	+	0	Parent=Os11t0145400-01
Chr11	irgsp1_rep	three_prime_UTR	2074944	2077162	.	+	.	Parent=Os11t0145400-01
Chr11	irgsp1_rep	mRNA	2077493	2081514	.	+	.	ID=Os11t0145700-00;Name=Os11t0145700-00;Locus_id=Os11g0145700;Note=Similar to SPRY domain containing protein.;Transcript_evidence=tplb0043i04 (Wheat FLcDNA);ORF_evidence=B6U031 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=B30.2/SPRY domain (IPR001870),SPla/RYanodine receptor SPRY (IPR003877),Concanavalin A-like lectin/glucanase (IPR008985),SPla/RYanodine receptor subgroup (IPR018355);TENOR=Os11t0145700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	2077493	2077563	.	+	.	Parent=Os11t0145700-00
Chr11	irgsp1_rep	CDS	2077564	2078272	.	+	0	Parent=Os11t0145700-00
Chr11	irgsp1_rep	CDS	2079576	2079839	.	+	2	Parent=Os11t0145700-00
Chr11	irgsp1_rep	CDS	2081432	2081514	.	+	2	Parent=Os11t0145700-00
Chr11	irgsp1_rep	mRNA	2087123	2087685	.	-	.	ID=Os11t0146000-01;Name=Os11t0146000-01;Locus_id=Os11g0146000;Note=Conserved hypothetical protein.;Transcript_evidence=AK062645 (DDBJ%2C Best hit);ORF_evidence=Q2RAM4 (UniProt);NIAS_FLcDNA=001-105-E01;TENOR=Os11t0146000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	2087684	2087685	.	-	.	Parent=Os11t0146000-01
Chr11	irgsp1_rep	CDS	2087210	2087683	.	-	0	Parent=Os11t0146000-01
Chr11	irgsp1_rep	three_prime_UTR	2087123	2087209	.	-	.	Parent=Os11t0146000-01
Chr11	irgsp1_rep	mRNA	2087799	2089433	.	-	.	ID=Os11t0146100-01;Name=Os11t0146100-01;Locus_id=Os11g0146100;Note=Similar to AtPIP5K1.;Transcript_evidence=AK105591 (DDBJ%2C Best hit);ORF_evidence=Q2RAM4 (UniProt);InterPro=MORN motif (IPR003409);NIAS_FLcDNA=001-129-A07;Expression=AK105591;TENOR=Os11t0146100-01;KEGG=Os11t0146100-01
Chr11	irgsp1_rep	five_prime_UTR	2089284	2089433	.	-	.	Parent=Os11t0146100-01
Chr11	irgsp1_rep	CDS	2087799	2089283	.	-	0	Parent=Os11t0146100-01
Chr11	irgsp1_rep	mRNA	2090813	2094502	.	-	.	ID=Os11t0146200-01;Name=Os11t0146200-01;Locus_id=Os11g0146200;Note=Ankyrin repeat domain containing protein.;Transcript_evidence=AK072033 (DDBJ%2C Best hit);ORF_evidence=B9G9D8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J013105H20;TENOR=Os11t0146200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	2094435	2094502	.	-	.	Parent=Os11t0146200-01
Chr11	irgsp1_rep	five_prime_UTR	2093266	2093293	.	-	.	Parent=Os11t0146200-01
Chr11	irgsp1_rep	CDS	2093252	2093265	.	-	0	Parent=Os11t0146200-01
Chr11	irgsp1_rep	CDS	2093064	2093113	.	-	1	Parent=Os11t0146200-01
Chr11	irgsp1_rep	CDS	2092925	2092990	.	-	2	Parent=Os11t0146200-01
Chr11	irgsp1_rep	CDS	2092685	2092852	.	-	2	Parent=Os11t0146200-01
Chr11	irgsp1_rep	CDS	2092474	2092608	.	-	2	Parent=Os11t0146200-01
Chr11	irgsp1_rep	CDS	2092230	2092384	.	-	2	Parent=Os11t0146200-01
Chr11	irgsp1_rep	three_prime_UTR	2092087	2092229	.	-	.	Parent=Os11t0146200-01
Chr11	irgsp1_rep	three_prime_UTR	2091860	2091982	.	-	.	Parent=Os11t0146200-01
Chr11	irgsp1_rep	three_prime_UTR	2091576	2091731	.	-	.	Parent=Os11t0146200-01
Chr11	irgsp1_rep	three_prime_UTR	2091390	2091488	.	-	.	Parent=Os11t0146200-01
Chr11	irgsp1_rep	three_prime_UTR	2091178	2091321	.	-	.	Parent=Os11t0146200-01
Chr11	irgsp1_rep	three_prime_UTR	2090813	2091107	.	-	.	Parent=Os11t0146200-01
Chr11	irgsp1_rep	mRNA	2090804	2094497	.	-	.	ID=Os11t0146200-02;Name=Os11t0146200-02;Locus_id=Os11g0146200;Note=Ankyrin repeat domain containing protein.;Transcript_evidence=AK073231 (DDBJ%2C Best hit);ORF_evidence=B9G9D8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J033021C07;TENOR=Os11t0146200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	2093252	2094497	.	-	.	Parent=Os11t0146200-02
Chr11	irgsp1_rep	five_prime_UTR	2093064	2093113	.	-	.	Parent=Os11t0146200-02
Chr11	irgsp1_rep	five_prime_UTR	2092785	2092990	.	-	.	Parent=Os11t0146200-02
Chr11	irgsp1_rep	CDS	2092685	2092784	.	-	0	Parent=Os11t0146200-02
Chr11	irgsp1_rep	CDS	2092474	2092608	.	-	2	Parent=Os11t0146200-02
Chr11	irgsp1_rep	CDS	2092230	2092384	.	-	2	Parent=Os11t0146200-02
Chr11	irgsp1_rep	three_prime_UTR	2092087	2092229	.	-	.	Parent=Os11t0146200-02
Chr11	irgsp1_rep	three_prime_UTR	2091860	2091982	.	-	.	Parent=Os11t0146200-02
Chr11	irgsp1_rep	three_prime_UTR	2091576	2091731	.	-	.	Parent=Os11t0146200-02
Chr11	irgsp1_rep	three_prime_UTR	2091390	2091488	.	-	.	Parent=Os11t0146200-02
Chr11	irgsp1_rep	three_prime_UTR	2091178	2091321	.	-	.	Parent=Os11t0146200-02
Chr11	irgsp1_rep	three_prime_UTR	2090804	2091107	.	-	.	Parent=Os11t0146200-02
Chr11	irgsp1_rep	mRNA	2097686	2100890	.	+	.	ID=Os11t0146300-01;Name=Os11t0146300-01;Locus_id=Os11g0146300;Note=Conserved hypothetical protein.;Transcript_evidence=AK062801 (DDBJ%2C Best hit);ORF_evidence=B9G9D9 (UniProt);NIAS_FLcDNA=001-107-D01;Expression=AK062801;TENOR=Os11t0146300-01;KEGG=Os11t0146300-01
Chr11	irgsp1_rep	five_prime_UTR	2097686	2097762	.	+	.	Parent=Os11t0146300-01
Chr11	irgsp1_rep	CDS	2097763	2097909	.	+	0	Parent=Os11t0146300-01
Chr11	irgsp1_rep	CDS	2098821	2098913	.	+	0	Parent=Os11t0146300-01
Chr11	irgsp1_rep	CDS	2099003	2099164	.	+	0	Parent=Os11t0146300-01
Chr11	irgsp1_rep	CDS	2099408	2099461	.	+	0	Parent=Os11t0146300-01
Chr11	irgsp1_rep	CDS	2099611	2099742	.	+	0	Parent=Os11t0146300-01
Chr11	irgsp1_rep	CDS	2100644	2100670	.	+	0	Parent=Os11t0146300-01
Chr11	irgsp1_rep	three_prime_UTR	2100671	2100890	.	+	.	Parent=Os11t0146300-01
Chr11	irgsp1_rep	mRNA	2103849	2107074	.	+	.	ID=Os11t0146500-01;Name=Os11t0146500-01;Locus_id=Os11g0146500;Note=SPla/RYanodine receptor SPRY domain containing protein.;Transcript_evidence=AK122002 (DDBJ%2C Best hit);ORF_evidence=B6U031 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=B30.2/SPRY domain (IPR001870),SPla/RYanodine receptor SPRY (IPR003877),Concanavalin A-like lectin/glucanase (IPR008985),SPla/RYanodine receptor subgroup (IPR018355);NIAS_FLcDNA=J033110K08;Expression=AK122002;TENOR=Os11t0146500-01;KEGG=Os11t0146500-01
Chr11	irgsp1_rep	five_prime_UTR	2103849	2103909	.	+	.	Parent=Os11t0146500-01
Chr11	irgsp1_rep	CDS	2103910	2104888	.	+	0	Parent=Os11t0146500-01
Chr11	irgsp1_rep	CDS	2106436	2106719	.	+	2	Parent=Os11t0146500-01
Chr11	irgsp1_rep	three_prime_UTR	2106720	2107074	.	+	.	Parent=Os11t0146500-01
Chr11	irgsp1_rep	mRNA	2103954	2107080	.	+	.	ID=Os11t0146500-02;Name=Os11t0146500-02;Locus_id=Os11g0146500;Note=Similar to SPRY domain containing protein.;Transcript_evidence=AK105738 (DDBJ%2C Best hit);ORF_evidence=B6U031 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=B30.2/SPRY domain (IPR001870),SPla/RYanodine receptor SPRY (IPR003877),Concanavalin A-like lectin/glucanase (IPR008985),SPla/RYanodine receptor subgroup (IPR018355);NIAS_FLcDNA=001-202-A04;Expression=AK105738;TENOR=Os11t0146500-02;KEGG=Os11t0146500-02
Chr11	irgsp1_rep	five_prime_UTR	2103954	2103954	.	+	.	Parent=Os11t0146500-02
Chr11	irgsp1_rep	CDS	2103955	2104888	.	+	0	Parent=Os11t0146500-02
Chr11	irgsp1_rep	CDS	2106436	2106719	.	+	2	Parent=Os11t0146500-02
Chr11	irgsp1_rep	three_prime_UTR	2106720	2107080	.	+	.	Parent=Os11t0146500-02
Chr11	irgsp1_rep	mRNA	2107344	2109325	.	-	.	ID=Os11t0146550-00;Name=Os11t0146550-00;Locus_id=Os11g0146550;Note=Similar to holiday junction resolvase%2C S1x1p%2C URI domain nuclease.;Transcript_evidence=FP095918 (DDBJ);ORF_evidence=NP_001150522.1 (RefSeq);GO=Biological Process: DNA repair (GO:0006281),Cellular Component: intracellular (GO:0005622),Molecular Function: nuclease activity (GO:0004518);InterPro=Excinuclease ABC%2C C subunit%2C N-terminal (IPR000305);TENOR=Os11t0146550-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	2108982	2109325	.	-	0	Parent=Os11t0146550-00
Chr11	irgsp1_rep	CDS	2108247	2108353	.	-	1	Parent=Os11t0146550-00
Chr11	irgsp1_rep	CDS	2107581	2107744	.	-	2	Parent=Os11t0146550-00
Chr11	irgsp1_rep	three_prime_UTR	2107344	2107580	.	-	.	Parent=Os11t0146550-00
Chr11	irgsp1_rep	mRNA	2110687	2111904	.	+	.	ID=Os11t0146600-00;Name=Os11t0146600-00;Locus_id=Os11g0146600;Note=Similar to Lipase family protein.;Transcript_evidence=AK368980 (DDBJ);ORF_evidence=Q2RAM0 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921);TENOR=Os11t0146600-00;KEGG=Os11t0146600-00
Chr11	irgsp1_rep	CDS	2110687	2111904	.	+	0	Parent=Os11t0146600-00
Chr11	irgsp1_rep	mRNA	2113987	2118775	.	-	.	ID=Os11t0146700-01;Name=Os11t0146700-01;Locus_id=Os11g0146700;Note=Similar to predicted protein.;Transcript_evidence=AK065900 (DDBJ%2C Best hit);ORF_evidence=NP_180214.1 (RefSeq);GO=Cellular Component: nucleus (GO:0005634);InterPro=RED-like%2C N-terminal (IPR012916);NIAS_FLcDNA=J013050D09;Expression=AK065900;TENOR=Os11t0146700-01;KEGG=Os11t0146700-01
Chr11	irgsp1_rep	five_prime_UTR	2118419	2118775	.	-	.	Parent=Os11t0146700-01
Chr11	irgsp1_rep	CDS	2118372	2118418	.	-	0	Parent=Os11t0146700-01
Chr11	irgsp1_rep	CDS	2117205	2117342	.	-	1	Parent=Os11t0146700-01
Chr11	irgsp1_rep	CDS	2117059	2117108	.	-	1	Parent=Os11t0146700-01
Chr11	irgsp1_rep	CDS	2116421	2116535	.	-	2	Parent=Os11t0146700-01
Chr11	irgsp1_rep	CDS	2115772	2115820	.	-	1	Parent=Os11t0146700-01
Chr11	irgsp1_rep	CDS	2115575	2115664	.	-	0	Parent=Os11t0146700-01
Chr11	irgsp1_rep	CDS	2114716	2114784	.	-	0	Parent=Os11t0146700-01
Chr11	irgsp1_rep	CDS	2114511	2114634	.	-	0	Parent=Os11t0146700-01
Chr11	irgsp1_rep	CDS	2113987	2114117	.	-	2	Parent=Os11t0146700-01
Chr11	irgsp1_rep	mRNA	2112283	2118775	.	-	.	ID=Os11t0146700-02;Name=Os11t0146700-02;Locus_id=Os11g0146700;Note=RED-like%2C C-terminal family protein.;Transcript_evidence=AK072412 (DDBJ%2C Best hit);ORF_evidence=NP_180214.1 (RefSeq);GO=Cellular Component: nucleus (GO:0005634);InterPro=RED-like%2C C-terminal (IPR012492),RED-like%2C N-terminal (IPR012916);NIAS_FLcDNA=J023086C01;Expression=AK072412;TENOR=Os11t0146700-02;KEGG=Os11t0146700-02
Chr11	irgsp1_rep	five_prime_UTR	2118419	2118775	.	-	.	Parent=Os11t0146700-02
Chr11	irgsp1_rep	CDS	2118372	2118418	.	-	0	Parent=Os11t0146700-02
Chr11	irgsp1_rep	CDS	2117205	2117342	.	-	1	Parent=Os11t0146700-02
Chr11	irgsp1_rep	CDS	2117059	2117108	.	-	1	Parent=Os11t0146700-02
Chr11	irgsp1_rep	CDS	2116421	2116535	.	-	2	Parent=Os11t0146700-02
Chr11	irgsp1_rep	CDS	2115772	2115820	.	-	1	Parent=Os11t0146700-02
Chr11	irgsp1_rep	CDS	2115575	2115664	.	-	0	Parent=Os11t0146700-02
Chr11	irgsp1_rep	CDS	2114716	2114784	.	-	0	Parent=Os11t0146700-02
Chr11	irgsp1_rep	CDS	2114511	2114634	.	-	0	Parent=Os11t0146700-02
Chr11	irgsp1_rep	CDS	2113759	2114117	.	-	2	Parent=Os11t0146700-02
Chr11	irgsp1_rep	CDS	2113198	2113584	.	-	0	Parent=Os11t0146700-02
Chr11	irgsp1_rep	CDS	2112527	2112802	.	-	0	Parent=Os11t0146700-02
Chr11	irgsp1_rep	three_prime_UTR	2112283	2112526	.	-	.	Parent=Os11t0146700-02
Chr11	irgsp1_rep	mRNA	2119120	2119608	.	+	.	ID=Os11t0146750-00;Name=Os11t0146750-00;Locus_id=Os11g0146750;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2RAT8 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);TENOR=Os11t0146750-00;KEGG=Os11t0146750-00 (EC:6.3.2.19)
Chr11	irgsp1_rep	CDS	2119120	2119608	.	+	0	Parent=Os11t0146750-00
Chr11	irgsp1_rep	mRNA	2120167	2124411	.	-	.	ID=Os11t0146800-01;Name=Os11t0146800-01;Locus_id=Os11g0146800;RAP-DB Gene Symbol Synonym(s)=RILIM15B%2C DMC1B%2C RiLIM15B%2C OsDMC1B%2C OsDmc1B%2C Dmc1B;RAP-DB Gene Name Synonym(s)=RILIM15B GENE%2C MEIOTIC PROTEIN DMC1B%2C RiLIM15B protein%2C MEIOTIC PROTEIN Dmc1B;CGSNL Gene Symbol=DMC1B;CGSNL Gene Name=MEIOTIC PROTEIN DMC1B;Oryzabase Gene Symbol Synonym(s)=OsDMC1B%2C OsDmc1B%2C Dmc1B%2C RiLIM15B;Oryzabase Gene Name Synonym(s)=MEIOTIC PROTEIN Dmc1B;Note=Meiosis-specific DNA recombinase%2C Synaptonemal complex (SC) assembly;Transcript_evidence=AB079874;ORF_evidence=Q7GBF7;GO=Biological Process: DNA metabolic process (GO:0006259),Biological Process: DNA repair (GO:0006281),Biological Process: reciprocal meiotic recombination (GO:0007131),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP binding (GO:0005524),Molecular Function: DNA-dependent ATPase activity (GO:0008094),Cellular Component: nucleus (GO:0005634);InterPro=DNA recombination and repair protein%2C RecA-like (IPR016467),Meiotic recombinase Dmc1 (IPR011940),DNA repair Rad51/transcription factor NusA%2C alpha-helical (IPR010995),DNA recombination and repair protein Rad51%2C C-terminal (IPR013632),DNA recombination and repair protein RecA-like%2C ATP-binding domain (IPR020588),P-loop containing nucleoside triphosphate hydrolase (IPR027417),DNA recombination and repair protein RecA%2C monomer-monomer interface (IPR020587);Manual Curation=May 16%2C 2016;Literature_PMID=26960731,18583359;Oryzabase=8508;TENOR=Os11t0146800-00
Chr11	irgsp1_rep	five_prime_UTR	2124287	2124411	.	-	.	Parent=Os11t0146800-01
Chr11	irgsp1_rep	five_prime_UTR	2124160	2124182	.	-	.	Parent=Os11t0146800-01
Chr11	irgsp1_rep	CDS	2124060	2124159	.	-	0	Parent=Os11t0146800-01
Chr11	irgsp1_rep	CDS	2123166	2123257	.	-	2	Parent=Os11t0146800-01
Chr11	irgsp1_rep	CDS	2122948	2123019	.	-	0	Parent=Os11t0146800-01
Chr11	irgsp1_rep	CDS	2122813	2122851	.	-	0	Parent=Os11t0146800-01
Chr11	irgsp1_rep	CDS	2122590	2122647	.	-	0	Parent=Os11t0146800-01
Chr11	irgsp1_rep	CDS	2122459	2122504	.	-	2	Parent=Os11t0146800-01
Chr11	irgsp1_rep	CDS	2121813	2121858	.	-	1	Parent=Os11t0146800-01
Chr11	irgsp1_rep	CDS	2121662	2121723	.	-	0	Parent=Os11t0146800-01
Chr11	irgsp1_rep	CDS	2121489	2121555	.	-	1	Parent=Os11t0146800-01
Chr11	irgsp1_rep	CDS	2121315	2121407	.	-	0	Parent=Os11t0146800-01
Chr11	irgsp1_rep	CDS	2121161	2121229	.	-	0	Parent=Os11t0146800-01
Chr11	irgsp1_rep	CDS	2120984	2121062	.	-	0	Parent=Os11t0146800-01
Chr11	irgsp1_rep	CDS	2120734	2120900	.	-	2	Parent=Os11t0146800-01
Chr11	irgsp1_rep	CDS	2120438	2120482	.	-	0	Parent=Os11t0146800-01
Chr11	irgsp1_rep	three_prime_UTR	2120167	2120437	.	-	.	Parent=Os11t0146800-01
Chr11	irgsp1_rep	mRNA	2129014	2131452	.	-	.	ID=Os11t0146950-00;Name=Os11t0146950-00;Locus_id=Os11g0146950;Note=Hypothetical conserved gene.;Transcript_evidence=CU406269 (DDBJ%2C Best hit);ORF_evidence=A2ZBE5 (UniProt);TENOR=Os11t0146950-00;KEGG=Os11t0146950-00
Chr11	irgsp1_rep	five_prime_UTR	2131174	2131452	.	-	.	Parent=Os11t0146950-00
Chr11	irgsp1_rep	CDS	2131041	2131173	.	-	0	Parent=Os11t0146950-00
Chr11	irgsp1_rep	CDS	2130820	2130946	.	-	2	Parent=Os11t0146950-00
Chr11	irgsp1_rep	CDS	2129603	2129609	.	-	1	Parent=Os11t0146950-00
Chr11	irgsp1_rep	three_prime_UTR	2129014	2129602	.	-	.	Parent=Os11t0146950-00
Chr11	irgsp1_rep	mRNA	2131922	2141236	.	-	.	ID=Os11t0147000-01;Name=Os11t0147000-01;Locus_id=Os11g0147000;CGSNL Gene Symbol=LACS2;CGSNL Gene Name=LONG-CHAIN ACYL-COA SYNTHASE 2;Oryzabase Gene Symbol Synonym(s)=OsLACS2%2C OsLACS6%2C LACS6;Oryzabase Gene Name Synonym(s)=long-chain acyl-CoA synthase 2%2C Long-Chain Acyl-CoA Synthetase 6;Note=Similar to Long chain acyl-CoA synthetase 6 (EC 6.2.1.3).;Transcript_evidence=AK067232 (DDBJ%2C Best hit);ORF_evidence=Q2QXT2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873),AMP-binding%2C conserved site (IPR020845);NIAS_FLcDNA=J013095N19;Oryzabase=20164;Expression=AK067232;TENOR=Os11t0147000-01;KEGG=Os11t0147000-01 (EC:6.2.1.3)
Chr11	irgsp1_rep	five_prime_UTR	2141133	2141236	.	-	.	Parent=Os11t0147000-01
Chr11	irgsp1_rep	CDS	2140973	2141132	.	-	0	Parent=Os11t0147000-01
Chr11	irgsp1_rep	CDS	2140391	2140451	.	-	2	Parent=Os11t0147000-01
Chr11	irgsp1_rep	CDS	2140243	2140320	.	-	1	Parent=Os11t0147000-01
Chr11	irgsp1_rep	CDS	2139666	2139737	.	-	1	Parent=Os11t0147000-01
Chr11	irgsp1_rep	CDS	2139494	2139575	.	-	1	Parent=Os11t0147000-01
Chr11	irgsp1_rep	CDS	2139233	2139338	.	-	0	Parent=Os11t0147000-01
Chr11	irgsp1_rep	CDS	2139083	2139159	.	-	2	Parent=Os11t0147000-01
Chr11	irgsp1_rep	CDS	2138617	2138661	.	-	0	Parent=Os11t0147000-01
Chr11	irgsp1_rep	CDS	2138431	2138517	.	-	0	Parent=Os11t0147000-01
Chr11	irgsp1_rep	CDS	2137599	2137688	.	-	0	Parent=Os11t0147000-01
Chr11	irgsp1_rep	CDS	2137423	2137502	.	-	0	Parent=Os11t0147000-01
Chr11	irgsp1_rep	CDS	2137221	2137314	.	-	1	Parent=Os11t0147000-01
Chr11	irgsp1_rep	CDS	2136358	2136446	.	-	0	Parent=Os11t0147000-01
Chr11	irgsp1_rep	CDS	2136138	2136226	.	-	1	Parent=Os11t0147000-01
Chr11	irgsp1_rep	CDS	2135862	2135991	.	-	2	Parent=Os11t0147000-01
Chr11	irgsp1_rep	CDS	2135656	2135774	.	-	1	Parent=Os11t0147000-01
Chr11	irgsp1_rep	CDS	2134857	2134980	.	-	2	Parent=Os11t0147000-01
Chr11	irgsp1_rep	CDS	2134683	2134769	.	-	1	Parent=Os11t0147000-01
Chr11	irgsp1_rep	CDS	2133125	2133228	.	-	1	Parent=Os11t0147000-01
Chr11	irgsp1_rep	CDS	2132960	2133045	.	-	2	Parent=Os11t0147000-01
Chr11	irgsp1_rep	CDS	2132653	2132739	.	-	0	Parent=Os11t0147000-01
Chr11	irgsp1_rep	CDS	2132456	2132542	.	-	0	Parent=Os11t0147000-01
Chr11	irgsp1_rep	CDS	2132287	2132382	.	-	0	Parent=Os11t0147000-01
Chr11	irgsp1_rep	three_prime_UTR	2131922	2132286	.	-	.	Parent=Os11t0147000-01
Chr11	irgsp1_rep	mRNA	2132251	2141081	.	+	.	ID=Os11t0147050-00;Name=Os11t0147050-00;Locus_id=Os11g0147050;Note=Hypothetical protein.;Transcript_evidence=tplb0021a08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0147050-00
Chr11	irgsp1_rep	five_prime_UTR	2132251	2132380	.	+	.	Parent=Os11t0147050-00
Chr11	irgsp1_rep	five_prime_UTR	2132454	2132542	.	+	.	Parent=Os11t0147050-00
Chr11	irgsp1_rep	five_prime_UTR	2132653	2132736	.	+	.	Parent=Os11t0147050-00
Chr11	irgsp1_rep	five_prime_UTR	2132951	2133031	.	+	.	Parent=Os11t0147050-00
Chr11	irgsp1_rep	five_prime_UTR	2133111	2133218	.	+	.	Parent=Os11t0147050-00
Chr11	irgsp1_rep	five_prime_UTR	2134669	2134768	.	+	.	Parent=Os11t0147050-00
Chr11	irgsp1_rep	five_prime_UTR	2134856	2134980	.	+	.	Parent=Os11t0147050-00
Chr11	irgsp1_rep	five_prime_UTR	2135656	2135727	.	+	.	Parent=Os11t0147050-00
Chr11	irgsp1_rep	CDS	2135728	2135776	.	+	0	Parent=Os11t0147050-00
Chr11	irgsp1_rep	CDS	2135857	2135990	.	+	2	Parent=Os11t0147050-00
Chr11	irgsp1_rep	CDS	2136137	2136178	.	+	0	Parent=Os11t0147050-00
Chr11	irgsp1_rep	three_prime_UTR	2136179	2136220	.	+	.	Parent=Os11t0147050-00
Chr11	irgsp1_rep	three_prime_UTR	2136349	2136445	.	+	.	Parent=Os11t0147050-00
Chr11	irgsp1_rep	three_prime_UTR	2137220	2137312	.	+	.	Parent=Os11t0147050-00
Chr11	irgsp1_rep	three_prime_UTR	2137421	2137501	.	+	.	Parent=Os11t0147050-00
Chr11	irgsp1_rep	three_prime_UTR	2137598	2137669	.	+	.	Parent=Os11t0147050-00
Chr11	irgsp1_rep	three_prime_UTR	2138412	2138530	.	+	.	Parent=Os11t0147050-00
Chr11	irgsp1_rep	three_prime_UTR	2139058	2139157	.	+	.	Parent=Os11t0147050-00
Chr11	irgsp1_rep	three_prime_UTR	2139231	2139341	.	+	.	Parent=Os11t0147050-00
Chr11	irgsp1_rep	three_prime_UTR	2139499	2139582	.	+	.	Parent=Os11t0147050-00
Chr11	irgsp1_rep	three_prime_UTR	2140260	2140440	.	+	.	Parent=Os11t0147050-00
Chr11	irgsp1_rep	three_prime_UTR	2140962	2141081	.	+	.	Parent=Os11t0147050-00
Chr11	irgsp1_rep	mRNA	2145222	2148114	.	+	.	ID=Os11t0147100-01;Name=Os11t0147100-01;Locus_id=Os11g0147100;Note=Conserved hypothetical protein.;Transcript_evidence=AK073054 (DDBJ%2C Best hit);ORF_evidence=A2ZBE7 (UniProt);NIAS_FLcDNA=J033005M04;Expression=AK073054;TENOR=Os11t0147100-01;KEGG=Os11t0147100-01
Chr11	irgsp1_rep	five_prime_UTR	2145222	2145344	.	+	.	Parent=Os11t0147100-01
Chr11	irgsp1_rep	CDS	2145345	2145411	.	+	0	Parent=Os11t0147100-01
Chr11	irgsp1_rep	CDS	2145500	2145573	.	+	2	Parent=Os11t0147100-01
Chr11	irgsp1_rep	CDS	2145802	2145910	.	+	0	Parent=Os11t0147100-01
Chr11	irgsp1_rep	CDS	2146374	2146456	.	+	2	Parent=Os11t0147100-01
Chr11	irgsp1_rep	CDS	2146569	2146727	.	+	0	Parent=Os11t0147100-01
Chr11	irgsp1_rep	CDS	2147643	2147744	.	+	0	Parent=Os11t0147100-01
Chr11	irgsp1_rep	CDS	2147831	2147977	.	+	0	Parent=Os11t0147100-01
Chr11	irgsp1_rep	three_prime_UTR	2147978	2148114	.	+	.	Parent=Os11t0147100-01
Chr11	irgsp1_rep	mRNA	2148786	2151562	.	-	.	ID=Os11t0147150-00;Name=Os11t0147150-00;Locus_id=Os11g0147150;Note=Hypothetical gene.;Transcript_evidence=CT841734 (DDBJ%2C Best hit);ORF_evidence=NP_001176350.1 (RefSeq);TENOR=Os11t0147150-00;KEGG=Os11t0147150-00
Chr11	irgsp1_rep	five_prime_UTR	2151294	2151562	.	-	.	Parent=Os11t0147150-00
Chr11	irgsp1_rep	CDS	2151120	2151293	.	-	0	Parent=Os11t0147150-00
Chr11	irgsp1_rep	CDS	2150000	2150079	.	-	0	Parent=Os11t0147150-00
Chr11	irgsp1_rep	CDS	2149006	2149075	.	-	1	Parent=Os11t0147150-00
Chr11	irgsp1_rep	three_prime_UTR	2148786	2149005	.	-	.	Parent=Os11t0147150-00
Chr11	irgsp1_rep	mRNA	2154400	2158091	.	-	.	ID=Os11t0147200-00;Name=Os11t0147200-00;Locus_id=Os11g0147200;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2RAL4 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Peptidase cysteine/serine%2C trypsin-like (IPR009003);TENOR=Os11t0147200-00;KEGG=Os11t0147200-00
Chr11	irgsp1_rep	CDS	2157947	2158091	.	-	0	Parent=Os11t0147200-00
Chr11	irgsp1_rep	CDS	2157742	2157846	.	-	2	Parent=Os11t0147200-00
Chr11	irgsp1_rep	CDS	2157518	2157618	.	-	2	Parent=Os11t0147200-00
Chr11	irgsp1_rep	CDS	2157177	2157446	.	-	0	Parent=Os11t0147200-00
Chr11	irgsp1_rep	CDS	2156810	2156988	.	-	0	Parent=Os11t0147200-00
Chr11	irgsp1_rep	CDS	2156268	2156353	.	-	1	Parent=Os11t0147200-00
Chr11	irgsp1_rep	CDS	2156026	2156168	.	-	2	Parent=Os11t0147200-00
Chr11	irgsp1_rep	CDS	2155827	2155952	.	-	0	Parent=Os11t0147200-00
Chr11	irgsp1_rep	CDS	2155482	2155751	.	-	0	Parent=Os11t0147200-00
Chr11	irgsp1_rep	CDS	2155217	2155353	.	-	0	Parent=Os11t0147200-00
Chr11	irgsp1_rep	CDS	2154734	2154817	.	-	1	Parent=Os11t0147200-00
Chr11	irgsp1_rep	CDS	2154400	2154451	.	-	1	Parent=Os11t0147200-00
Chr11	irgsp1_rep	mRNA	2168334	2171145	.	+	.	ID=Os11t0147500-01;Name=Os11t0147500-01;Locus_id=Os11g0147500;CGSNL Gene Symbol=HMP45;CGSNL Gene Name=HEAVY METAL-ASSOCIATED PROTEIN 45;Oryzabase Gene Symbol Synonym(s)=OsHMP45;Oryzabase Gene Name Synonym(s)=Heavy metal-associated protein 45;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK121700 (DDBJ%2C Best hit);ORF_evidence=Q2QXS5 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);NIAS_FLcDNA=J033073F21;Oryzabase=23560;Expression=AK121700;TENOR=Os11t0147500-01;KEGG=Os11t0147500-01
Chr11	irgsp1_rep	five_prime_UTR	2168334	2168592	.	+	.	Parent=Os11t0147500-01
Chr11	irgsp1_rep	five_prime_UTR	2168722	2168787	.	+	.	Parent=Os11t0147500-01
Chr11	irgsp1_rep	CDS	2168788	2168817	.	+	0	Parent=Os11t0147500-01
Chr11	irgsp1_rep	CDS	2169054	2169129	.	+	0	Parent=Os11t0147500-01
Chr11	irgsp1_rep	CDS	2169255	2170696	.	+	2	Parent=Os11t0147500-01
Chr11	irgsp1_rep	three_prime_UTR	2170697	2171145	.	+	.	Parent=Os11t0147500-01
Chr11	irgsp1_rep	mRNA	2168745	2171132	.	+	.	ID=Os11t0147500-02;Name=Os11t0147500-02;Locus_id=Os11g0147500;CGSNL Gene Symbol=HMP45;CGSNL Gene Name=HEAVY METAL-ASSOCIATED PROTEIN 45;Oryzabase Gene Symbol Synonym(s)=OsHMP45;Oryzabase Gene Name Synonym(s)=Heavy metal-associated protein 45;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK105759 (DDBJ%2C Best hit);ORF_evidence=Q2QXS5 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);NIAS_FLcDNA=001-202-D05;Oryzabase=23560;Expression=AK105759;TENOR=Os11t0147500-02;KEGG=Os11t0147500-02
Chr11	irgsp1_rep	five_prime_UTR	2168745	2168787	.	+	.	Parent=Os11t0147500-02
Chr11	irgsp1_rep	CDS	2168788	2168817	.	+	0	Parent=Os11t0147500-02
Chr11	irgsp1_rep	CDS	2169054	2169129	.	+	0	Parent=Os11t0147500-02
Chr11	irgsp1_rep	CDS	2169255	2170696	.	+	2	Parent=Os11t0147500-02
Chr11	irgsp1_rep	three_prime_UTR	2170697	2171132	.	+	.	Parent=Os11t0147500-02
Chr11	irgsp1_rep	mRNA	2177141	2177719	.	-	.	ID=Os11t0147600-01;Name=Os11t0147600-01;Locus_id=Os11g0147600;Note=Conserved hypothetical protein.;Transcript_evidence=AK111127 (DDBJ%2C Best hit);ORF_evidence=B8BD47 (UniProt);NIAS_FLcDNA=002-176-C08;TENOR=Os11t0147600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	2177571	2177719	.	-	.	Parent=Os11t0147600-01
Chr11	irgsp1_rep	CDS	2177181	2177570	.	-	0	Parent=Os11t0147600-01
Chr11	irgsp1_rep	three_prime_UTR	2177141	2177180	.	-	.	Parent=Os11t0147600-01
Chr11	irgsp1_rep	mRNA	2179204	2183337	.	+	.	ID=Os11t0147700-01;Name=Os11t0147700-01;Locus_id=Os11g0147700;Note=Conserved hypothetical protein.;Transcript_evidence=AK287820 (DDBJ%2C Best hit);ORF_evidence=NP_001176352.1 (RefSeq);NIAS_FLcDNA=J065182E19;TENOR=Os11t0147700-01;KEGG=Os11t0147700-01
Chr11	irgsp1_rep	five_prime_UTR	2179204	2179213	.	+	.	Parent=Os11t0147700-01
Chr11	irgsp1_rep	CDS	2179214	2179393	.	+	0	Parent=Os11t0147700-01
Chr11	irgsp1_rep	CDS	2183060	2183221	.	+	0	Parent=Os11t0147700-01
Chr11	irgsp1_rep	three_prime_UTR	2183222	2183337	.	+	.	Parent=Os11t0147700-01
Chr11	irgsp1_rep	mRNA	2204302	2207780	.	-	.	ID=Os11t0147800-01;Name=Os11t0147800-01;Locus_id=Os11g0147800;Note=Similar to Wali7 protein (Fragment).;Transcript_evidence=AK119185 (DDBJ%2C Best hit),AK071762 (DDBJ%2C Best hit),AK104445 (DDBJ%2C Best hit);ORF_evidence=Q43661 (UniProt);NIAS_FLcDNA=001-039-G04,J023109H06,006-211-B05;TENOR=Os11t0147800-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	2207567	2207780	.	-	.	Parent=Os11t0147800-01
Chr11	irgsp1_rep	CDS	2207364	2207566	.	-	0	Parent=Os11t0147800-01
Chr11	irgsp1_rep	CDS	2205237	2205477	.	-	1	Parent=Os11t0147800-01
Chr11	irgsp1_rep	CDS	2204983	2205103	.	-	0	Parent=Os11t0147800-01
Chr11	irgsp1_rep	CDS	2204709	2204818	.	-	2	Parent=Os11t0147800-01
Chr11	irgsp1_rep	CDS	2204509	2204547	.	-	0	Parent=Os11t0147800-01
Chr11	irgsp1_rep	three_prime_UTR	2204302	2204508	.	-	.	Parent=Os11t0147800-01
Chr11	irgsp1_rep	mRNA	2206996	2207780	.	-	.	ID=Os11t0147800-02;Name=Os11t0147800-02;Locus_id=Os11g0147800;Note=Similar to Wali7 protein (Fragment).;Transcript_evidence=AK105169 (DDBJ%2C Best hit),AK102998 (DDBJ%2C Best hit);ORF_evidence=Q43661 (UniProt);InterPro=Domain of unknown function DUF3700 (IPR024286);NIAS_FLcDNA=001-104-F06,J033116F02;Expression=AK105169;TENOR=Os11t0147800-02;KEGG=Os11t0147800-02
Chr11	irgsp1_rep	five_prime_UTR	2207567	2207780	.	-	.	Parent=Os11t0147800-02
Chr11	irgsp1_rep	CDS	2207258	2207566	.	-	0	Parent=Os11t0147800-02
Chr11	irgsp1_rep	three_prime_UTR	2206996	2207257	.	-	.	Parent=Os11t0147800-02
Chr11	irgsp1_rep	mRNA	2204699	2207570	.	+	.	ID=Os11t0147901-00;Name=Os11t0147901-00;Locus_id=Os11g0147901;Note=Non-protein coding transcript.;Transcript_evidence=BT016691 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0147901-00
Chr11	irgsp1_rep	exon	2204699	2204822	.	+	.	Parent=Os11t0147901-00
Chr11	irgsp1_rep	exon	2204988	2205095	.	+	.	Parent=Os11t0147901-00
Chr11	irgsp1_rep	exon	2205236	2205455	.	+	.	Parent=Os11t0147901-00
Chr11	irgsp1_rep	exon	2207343	2207570	.	+	.	Parent=Os11t0147901-00
Chr11	irgsp1_rep	mRNA	2217646	2220715	.	-	.	ID=Os11t0148000-01;Name=Os11t0148000-01;Locus_id=Os11g0148000;CGSNL Gene Symbol=CAX8;CGSNL Gene Name=Ca(2+)/H(+) EXCHANGER 8;Oryzabase Gene Symbol Synonym(s)=OsCAX8%2C OsNCX13%2C NCX13%2C OsNaCa11exB%2C OsCCX5%2C CCX5;Oryzabase Gene Name Synonym(s)=Vacuolar cation/proton exchanger 8%2C Ca(2+)/H(+) exchanger 8%2C cation/H+ exchanger 8%2C Na+/Ca2+ Exchanger 13%2C Sodium/calcium exchanger 13;Note=Sodium/calcium exchanger membrane region domain containing protein.;Transcript_evidence=AK108267 (DDBJ%2C Best hit);ORF_evidence=NP_172370.3 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Sodium/calcium exchanger membrane region (IPR004837);NIAS_FLcDNA=002-141-B11;Oryzabase=15456;Expression=AK108267;TENOR=Os11t0148000-01;KEGG=Os11t0148000-01
Chr11	irgsp1_rep	five_prime_UTR	2220632	2220715	.	-	.	Parent=Os11t0148000-01
Chr11	irgsp1_rep	CDS	2219927	2220631	.	-	0	Parent=Os11t0148000-01
Chr11	irgsp1_rep	CDS	2217789	2217881	.	-	0	Parent=Os11t0148000-01
Chr11	irgsp1_rep	three_prime_UTR	2217646	2217788	.	-	.	Parent=Os11t0148000-01
Chr11	irgsp1_rep	mRNA	2218227	2218535	.	+	.	ID=Os11t0148101-00;Name=Os11t0148101-00;Locus_id=Os11g0148101;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G9E7 (UniProt);TENOR=Os11t0148101-00;KEGG=Os11t0148101-00
Chr11	irgsp1_rep	CDS	2218227	2218535	.	+	0	Parent=Os11t0148101-00
Chr11	irgsp1_rep	mRNA	2224857	2228513	.	+	.	ID=Os11t0148200-01;Name=Os11t0148200-01;Locus_id=Os11g0148200;Oryzabase Gene Symbol Synonym(s)=OsTBL22%2C TBL22;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 22;Note=Similar to predicted protein.;Transcript_evidence=AK243624 (DDBJ%2C Best hit);ORF_evidence=Q2RAK5 (UniProt);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=J100086H16;Oryzabase=21477;TENOR=Os11t0148200-01;KEGG=Os11t0148200-01
Chr11	irgsp1_rep	five_prime_UTR	2224857	2224936	.	+	.	Parent=Os11t0148200-01
Chr11	irgsp1_rep	CDS	2224937	2224939	.	+	0	Parent=Os11t0148200-01
Chr11	irgsp1_rep	CDS	2225054	2225376	.	+	0	Parent=Os11t0148200-01
Chr11	irgsp1_rep	CDS	2226613	2227008	.	+	1	Parent=Os11t0148200-01
Chr11	irgsp1_rep	CDS	2227189	2227347	.	+	1	Parent=Os11t0148200-01
Chr11	irgsp1_rep	CDS	2227758	2228169	.	+	1	Parent=Os11t0148200-01
Chr11	irgsp1_rep	three_prime_UTR	2228170	2228513	.	+	.	Parent=Os11t0148200-01
Chr11	irgsp1_rep	mRNA	2229836	2233865	.	+	.	ID=Os11t0148300-01;Name=Os11t0148300-01;Locus_id=Os11g0148300;Oryzabase Gene Symbol Synonym(s)=OsFKBP42b;Oryzabase Gene Name Synonym(s)=FK506 binding protein 42b;Note=Similar to Peptidyl-prolyl isomerase.;Transcript_evidence=AK243151 (DDBJ%2C Best hit);ORF_evidence=B4FDQ2 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type%2C domain (IPR001179),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734),Elongated TPR repeat-containing domain (IPR023114),Peptidyl-prolyl cis-trans isomerase%2C FKBP-type (IPR023566);NIAS_FLcDNA=J100032L04;Oryzabase=10040;TENOR=Os11t0148300-01;KEGG=Os11t0148300-01
Chr11	irgsp1_rep	five_prime_UTR	2229836	2230042	.	+	.	Parent=Os11t0148300-01
Chr11	irgsp1_rep	CDS	2230043	2230112	.	+	0	Parent=Os11t0148300-01
Chr11	irgsp1_rep	CDS	2230900	2231079	.	+	2	Parent=Os11t0148300-01
Chr11	irgsp1_rep	CDS	2231741	2231830	.	+	2	Parent=Os11t0148300-01
Chr11	irgsp1_rep	CDS	2232290	2232474	.	+	2	Parent=Os11t0148300-01
Chr11	irgsp1_rep	CDS	2232635	2232757	.	+	0	Parent=Os11t0148300-01
Chr11	irgsp1_rep	CDS	2232829	2232981	.	+	0	Parent=Os11t0148300-01
Chr11	irgsp1_rep	CDS	2233326	2233652	.	+	0	Parent=Os11t0148300-01
Chr11	irgsp1_rep	three_prime_UTR	2233653	2233865	.	+	.	Parent=Os11t0148300-01
Chr11	irgsp1_rep	mRNA	2234631	2239079	.	+	.	ID=Os11t0148400-01;Name=Os11t0148400-01;Locus_id=Os11g0148400;Note=Conserved hypothetical protein.;Transcript_evidence=AK066122 (DDBJ%2C Best hit);ORF_evidence=Q2RAK3 (UniProt);NIAS_FLcDNA=J013058D19;Expression=AK066122;TENOR=Os11t0148400-01;KEGG=Os11t0148400-01
Chr11	irgsp1_rep	five_prime_UTR	2234631	2234731	.	+	.	Parent=Os11t0148400-01
Chr11	irgsp1_rep	CDS	2234732	2234896	.	+	0	Parent=Os11t0148400-01
Chr11	irgsp1_rep	CDS	2234948	2235328	.	+	0	Parent=Os11t0148400-01
Chr11	irgsp1_rep	CDS	2236010	2236279	.	+	0	Parent=Os11t0148400-01
Chr11	irgsp1_rep	CDS	2236357	2236485	.	+	0	Parent=Os11t0148400-01
Chr11	irgsp1_rep	CDS	2236564	2236635	.	+	0	Parent=Os11t0148400-01
Chr11	irgsp1_rep	CDS	2236889	2237050	.	+	0	Parent=Os11t0148400-01
Chr11	irgsp1_rep	CDS	2237536	2237746	.	+	0	Parent=Os11t0148400-01
Chr11	irgsp1_rep	CDS	2237849	2238184	.	+	2	Parent=Os11t0148400-01
Chr11	irgsp1_rep	CDS	2238286	2238398	.	+	2	Parent=Os11t0148400-01
Chr11	irgsp1_rep	three_prime_UTR	2238399	2239079	.	+	.	Parent=Os11t0148400-01
Chr11	irgsp1_rep	mRNA	2239301	2243356	.	-	.	ID=Os11t0148500-02;Name=Os11t0148500-02;Locus_id=Os11g0148500;RAP-DB Gene Symbol Synonym(s)=OsPK1;RAP-DB Gene Name Synonym(s)=pyruvate kinase 1;Oryzabase Gene Symbol Synonym(s)=OsPK1%2C PK1;Oryzabase Gene Name Synonym(s)=pyruvate kinase 1;Note=Cytosolic pyruvate kinase%2C Plant morphological development;Transcript_evidence=AK061668,AK099650;ORF_evidence=Q2RAK2;GO=Biological Process: glycolytic process (GO:0006096),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyruvate kinase activity (GO:0004743),Molecular Function: potassium ion binding (GO:0030955);InterPro=Pyruvate kinase (IPR001697),Pyruvate/Phosphoenolpyruvate kinase-like domain (IPR015813),Pyruvate kinase%2C barrel (IPR015793),Pyruvate kinase-like%2C insert domain (IPR011037),Pyruvate kinase%2C C-terminal (IPR015795);NIAS_FLcDNA=001-036-F07, J013065F07;Manual Curation=May 29%2C 2017;Literature_PMID=21805151;Oryzabase=11417;Expression=AK061668;TENOR=Os11t0148500-02;KEGG=Os11t0148500-02 (EC:2.7.1.40);Subcellular location=cytosol (GO:0005829)
Chr11	irgsp1_rep	five_prime_UTR	2243234	2243356	.	-	.	Parent=Os11t0148500-02
Chr11	irgsp1_rep	CDS	2243165	2243233	.	-	0	Parent=Os11t0148500-02
Chr11	irgsp1_rep	CDS	2242948	2243044	.	-	0	Parent=Os11t0148500-02
Chr11	irgsp1_rep	CDS	2242757	2242854	.	-	2	Parent=Os11t0148500-02
Chr11	irgsp1_rep	CDS	2242516	2242671	.	-	0	Parent=Os11t0148500-02
Chr11	irgsp1_rep	CDS	2242262	2242339	.	-	0	Parent=Os11t0148500-02
Chr11	irgsp1_rep	CDS	2242002	2242133	.	-	0	Parent=Os11t0148500-02
Chr11	irgsp1_rep	CDS	2241779	2241859	.	-	0	Parent=Os11t0148500-02
Chr11	irgsp1_rep	CDS	2241507	2241578	.	-	0	Parent=Os11t0148500-02
Chr11	irgsp1_rep	CDS	2241336	2241425	.	-	0	Parent=Os11t0148500-02
Chr11	irgsp1_rep	CDS	2240998	2241142	.	-	0	Parent=Os11t0148500-02
Chr11	irgsp1_rep	CDS	2240839	2240927	.	-	2	Parent=Os11t0148500-02
Chr11	irgsp1_rep	CDS	2240605	2240700	.	-	0	Parent=Os11t0148500-02
Chr11	irgsp1_rep	CDS	2240388	2240455	.	-	0	Parent=Os11t0148500-02
Chr11	irgsp1_rep	CDS	2240201	2240300	.	-	1	Parent=Os11t0148500-02
Chr11	irgsp1_rep	CDS	2240013	2240072	.	-	0	Parent=Os11t0148500-02
Chr11	irgsp1_rep	CDS	2239565	2239717	.	-	0	Parent=Os11t0148500-02
Chr11	irgsp1_rep	three_prime_UTR	2239301	2239564	.	-	.	Parent=Os11t0148500-02
Chr11	irgsp1_rep	mRNA	2245125	2247217	.	-	.	ID=Os11t0148600-01;Name=Os11t0148600-01;Locus_id=Os11g0148600;Note=Conserved hypothetical protein.;Transcript_evidence=AK102442 (DDBJ%2C Best hit),AK100066 (DDBJ%2C Best hit);ORF_evidence=A2ZBF8 (UniProt);NIAS_FLcDNA=J033093M12,J013161L12;Expression=AK102442;TENOR=Os11t0148600-01;KEGG=Os11t0148600-01
Chr11	irgsp1_rep	five_prime_UTR	2247141	2247217	.	-	.	Parent=Os11t0148600-01
Chr11	irgsp1_rep	CDS	2246751	2247140	.	-	0	Parent=Os11t0148600-01
Chr11	irgsp1_rep	CDS	2246345	2246515	.	-	0	Parent=Os11t0148600-01
Chr11	irgsp1_rep	three_prime_UTR	2246344	2246344	.	-	.	Parent=Os11t0148600-01
Chr11	irgsp1_rep	three_prime_UTR	2245125	2245400	.	-	.	Parent=Os11t0148600-01
Chr11	irgsp1_rep	mRNA	2247706	2252692	.	-	.	ID=Os11t0148700-01;Name=Os11t0148700-01;Locus_id=Os11g0148700;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK066721 (DDBJ%2C Best hit);ORF_evidence=Q53PX0 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J013083G18;Expression=AK066721;TENOR=Os11t0148700-01;KEGG=Os11t0148700-01
Chr11	irgsp1_rep	CDS	2252240	2252692	.	-	0	Parent=Os11t0148700-01
Chr11	irgsp1_rep	CDS	2251037	2251334	.	-	0	Parent=Os11t0148700-01
Chr11	irgsp1_rep	CDS	2250829	2250953	.	-	2	Parent=Os11t0148700-01
Chr11	irgsp1_rep	CDS	2250289	2250749	.	-	0	Parent=Os11t0148700-01
Chr11	irgsp1_rep	CDS	2250154	2250182	.	-	1	Parent=Os11t0148700-01
Chr11	irgsp1_rep	CDS	2249360	2250034	.	-	2	Parent=Os11t0148700-01
Chr11	irgsp1_rep	CDS	2248299	2249251	.	-	2	Parent=Os11t0148700-01
Chr11	irgsp1_rep	three_prime_UTR	2248229	2248298	.	-	.	Parent=Os11t0148700-01
Chr11	irgsp1_rep	three_prime_UTR	2247706	2248126	.	-	.	Parent=Os11t0148700-01
Chr11	irgsp1_rep	mRNA	2258996	2261027	.	-	.	ID=Os11t0148800-00;Name=Os11t0148800-00;Locus_id=Os11g0148800;Note=Zinc finger%2C FYVE/PHD-type domain containing protein.;Transcript_evidence=AK330610 (DDBJ);ORF_evidence=Q53PW9 (UniProt);InterPro=Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);TENOR=Os11t0148800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	2260991	2261027	.	-	.	Parent=Os11t0148800-00
Chr11	irgsp1_rep	CDS	2260663	2260990	.	-	0	Parent=Os11t0148800-00
Chr11	irgsp1_rep	CDS	2260185	2260567	.	-	2	Parent=Os11t0148800-00
Chr11	irgsp1_rep	CDS	2259301	2259444	.	-	0	Parent=Os11t0148800-00
Chr11	irgsp1_rep	CDS	2258996	2259226	.	-	0	Parent=Os11t0148800-00
Chr11	irgsp1_rep	mRNA	2271010	2274026	.	+	.	ID=Os11t0149100-01;Name=Os11t0149100-01;Locus_id=Os11g0149100;RAP-DB Gene Symbol Synonym(s)=OsAHL1;RAP-DB Gene Name Synonym(s)=AT-hook content nuclear localized protein 1;Note=AT-hook motif and PPC domain containing protein%2C Drought tolerance%2C Regulation of root development under drought condition%2C Oxidative stress response%2C Regulation of the content of chlorophyll;Transcript_evidence=AK102958;ORF_evidence=Q53PX7;InterPro=PPC domain (IPR005175);NIAS_FLcDNA=J033115G22;Manual Curation=July 3%2C 2017;Literature_PMID=27453463;Expression=AK102958;TENOR=Os11t0149100-01;KEGG=Os11t0149100-01;Subcellular location=nucleus (GO:0005634)
Chr11	irgsp1_rep	five_prime_UTR	2271010	2271186	.	+	.	Parent=Os11t0149100-01
Chr11	irgsp1_rep	CDS	2271187	2271562	.	+	0	Parent=Os11t0149100-01
Chr11	irgsp1_rep	CDS	2272019	2272086	.	+	2	Parent=Os11t0149100-01
Chr11	irgsp1_rep	CDS	2272203	2272334	.	+	0	Parent=Os11t0149100-01
Chr11	irgsp1_rep	CDS	2273047	2273205	.	+	0	Parent=Os11t0149100-01
Chr11	irgsp1_rep	CDS	2273360	2273725	.	+	0	Parent=Os11t0149100-01
Chr11	irgsp1_rep	three_prime_UTR	2273726	2274026	.	+	.	Parent=Os11t0149100-01
Chr11	irgsp1_rep	mRNA	2276477	2276917	.	+	.	ID=Os11t0149200-00;Name=Os11t0149200-00;Locus_id=Os11g0149200;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001065754.1 (RefSeq);Oryzabase=23575;TENOR=Os11t0149200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	2276477	2276917	.	+	0	Parent=Os11t0149200-00
Chr11	irgsp1_rep	mRNA	2278724	2279532	.	+	.	ID=Os11t0149300-01;Name=Os11t0149300-01;Locus_id=Os11g0149300;Note=Hypothetical protein.;Transcript_evidence=AK062442 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-103-B01;TENOR=Os11t0149300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	2278724	2278973	.	+	0	Parent=Os11t0149300-01
Chr11	irgsp1_rep	CDS	2279152	2279303	.	+	2	Parent=Os11t0149300-01
Chr11	irgsp1_rep	three_prime_UTR	2279304	2279532	.	+	.	Parent=Os11t0149300-01
Chr11	irgsp1_rep	mRNA	2278748	2281615	.	+	.	ID=Os11t0149300-02;Name=Os11t0149300-02;Locus_id=Os11g0149300;Note=Conserved hypothetical protein.;Transcript_evidence=AK102804 (DDBJ%2C Best hit);ORF_evidence=Q53PX5 (UniProt);NIAS_FLcDNA=J033108H13;TENOR=Os11t0149300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	2278748	2278973	.	+	.	Parent=Os11t0149300-02
Chr11	irgsp1_rep	five_prime_UTR	2279082	2279344	.	+	.	Parent=Os11t0149300-02
Chr11	irgsp1_rep	CDS	2279345	2279440	.	+	0	Parent=Os11t0149300-02
Chr11	irgsp1_rep	CDS	2279688	2279822	.	+	0	Parent=Os11t0149300-02
Chr11	irgsp1_rep	three_prime_UTR	2279823	2281615	.	+	.	Parent=Os11t0149300-02
Chr11	irgsp1_rep	mRNA	2291329	2292410	.	+	.	ID=Os11t0149400-01;Name=Os11t0149400-01;Locus_id=Os11g0149400;CGSNL Gene Symbol=PSK2;CGSNL Gene Name=PHYTOSULFOKINE 2;Oryzabase Gene Symbol Synonym(s)=OsPSK2;Oryzabase Gene Name Synonym(s)=phytosulfokine 2;Note=Similar to Phytosulfokines 2 precursor.;Transcript_evidence=AK063900 (DDBJ%2C Best hit);ORF_evidence=Q0IUL4 (UniProt);GO=Biological Process: cell proliferation (GO:0008283),Cellular Component: extracellular region (GO:0005576),Molecular Function: growth factor activity (GO:0008083);InterPro=Phytosulfokine (IPR009438);NIAS_FLcDNA=001-122-H04;Oryzabase=14418;Expression=AK063900;TENOR=Os11t0149400-01;KEGG=Os11t0149400-01
Chr11	irgsp1_rep	five_prime_UTR	2291329	2291462	.	+	.	Parent=Os11t0149400-01
Chr11	irgsp1_rep	CDS	2291463	2291595	.	+	0	Parent=Os11t0149400-01
Chr11	irgsp1_rep	CDS	2291681	2291775	.	+	2	Parent=Os11t0149400-01
Chr11	irgsp1_rep	CDS	2291907	2292038	.	+	0	Parent=Os11t0149400-01
Chr11	irgsp1_rep	three_prime_UTR	2292039	2292410	.	+	.	Parent=Os11t0149400-01
Chr11	irgsp1_rep	mRNA	2291329	2292410	.	+	.	ID=Os11t0149400-02;Name=Os11t0149400-02;Locus_id=Os11g0149400;CGSNL Gene Symbol=PSK2;CGSNL Gene Name=PHYTOSULFOKINE 2;Oryzabase Gene Symbol Synonym(s)=OsPSK2;Oryzabase Gene Name Synonym(s)=phytosulfokine 2;Note=Similar to cDNA clone:001-122-H04%2C full insert sequence.;Transcript_evidence=AK073352 (DDBJ%2C Best hit);ORF_evidence=B7E958 (UniProt);NIAS_FLcDNA=J033027C09;Oryzabase=14418;TENOR=Os11t0149400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	2291329	2291583	.	+	.	Parent=Os11t0149400-02
Chr11	irgsp1_rep	CDS	2291584	2291823	.	+	0	Parent=Os11t0149400-02
Chr11	irgsp1_rep	three_prime_UTR	2291824	2292410	.	+	.	Parent=Os11t0149400-02
Chr11	irgsp1_rep	mRNA	2321650	2323268	.	+	.	ID=Os11t0149900-00;Name=Os11t0149900-00;Locus_id=Os11g0149900;Note=PAN-like%2C type 2 domain containing protein.;Transcript_evidence=BT034293 (DDBJ);ORF_evidence=NP_001176354.1 (RefSeq);GO=Biological Process: recognition of pollen (GO:0048544),Molecular Function: sugar binding (GO:0005529);InterPro=S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609);TENOR=Os11t0149900-00;KEGG=Os11t0149900-00
Chr11	irgsp1_rep	five_prime_UTR	2321650	2321734	.	+	.	Parent=Os11t0149900-00
Chr11	irgsp1_rep	CDS	2321735	2323258	.	+	0	Parent=Os11t0149900-00
Chr11	irgsp1_rep	three_prime_UTR	2323259	2323268	.	+	.	Parent=Os11t0149900-00
Chr11	irgsp1_rep	mRNA	2329968	2333238	.	+	.	ID=Os11t0150100-01;Name=Os11t0150100-01;Locus_id=Os11g0150100;Note=Phosphoglycerate mutase domain containing protein.;Transcript_evidence=AK068167 (DDBJ%2C Best hit);ORF_evidence=Q53PY6 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Phosphoglycerate/bisphosphoglycerate mutase%2C active site (IPR001345),Histidine phosphatase superfamily%2C clade-1 (IPR013078);NIAS_FLcDNA=J013135N12;Expression=AK068167;TENOR=Os11t0150100-01;KEGG=Os11t0150100-01
Chr11	irgsp1_rep	five_prime_UTR	2329968	2330020	.	+	.	Parent=Os11t0150100-01
Chr11	irgsp1_rep	CDS	2330021	2330446	.	+	0	Parent=Os11t0150100-01
Chr11	irgsp1_rep	CDS	2330546	2330762	.	+	0	Parent=Os11t0150100-01
Chr11	irgsp1_rep	CDS	2330848	2330966	.	+	2	Parent=Os11t0150100-01
Chr11	irgsp1_rep	CDS	2331156	2331254	.	+	0	Parent=Os11t0150100-01
Chr11	irgsp1_rep	CDS	2331733	2331786	.	+	0	Parent=Os11t0150100-01
Chr11	irgsp1_rep	CDS	2331870	2331968	.	+	0	Parent=Os11t0150100-01
Chr11	irgsp1_rep	CDS	2332073	2332180	.	+	0	Parent=Os11t0150100-01
Chr11	irgsp1_rep	CDS	2332653	2333018	.	+	0	Parent=Os11t0150100-01
Chr11	irgsp1_rep	three_prime_UTR	2333019	2333238	.	+	.	Parent=Os11t0150100-01
Chr11	irgsp1_rep	mRNA	2329992	2333214	.	+	.	ID=Os11t0150100-02;Name=Os11t0150100-02;Locus_id=Os11g0150100;Note=Phosphoglycerate mutase domain containing protein.;Transcript_evidence=AK062247 (DDBJ%2C Best hit);ORF_evidence=Q53PY6 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Phosphoglycerate/bisphosphoglycerate mutase%2C active site (IPR001345),Histidine phosphatase superfamily%2C clade-1 (IPR013078);NIAS_FLcDNA=001-047-F08;Expression=AK062247;TENOR=Os11t0150100-02;KEGG=Os11t0150100-02
Chr11	irgsp1_rep	five_prime_UTR	2329992	2330020	.	+	.	Parent=Os11t0150100-02
Chr11	irgsp1_rep	CDS	2330021	2330446	.	+	0	Parent=Os11t0150100-02
Chr11	irgsp1_rep	CDS	2330546	2330762	.	+	0	Parent=Os11t0150100-02
Chr11	irgsp1_rep	CDS	2330848	2330966	.	+	2	Parent=Os11t0150100-02
Chr11	irgsp1_rep	CDS	2331156	2331254	.	+	0	Parent=Os11t0150100-02
Chr11	irgsp1_rep	CDS	2331733	2331786	.	+	0	Parent=Os11t0150100-02
Chr11	irgsp1_rep	CDS	2331870	2331968	.	+	0	Parent=Os11t0150100-02
Chr11	irgsp1_rep	CDS	2332073	2332180	.	+	0	Parent=Os11t0150100-02
Chr11	irgsp1_rep	CDS	2332653	2333018	.	+	0	Parent=Os11t0150100-02
Chr11	irgsp1_rep	three_prime_UTR	2333019	2333214	.	+	.	Parent=Os11t0150100-02
Chr11	irgsp1_rep	mRNA	2335086	2341117	.	+	.	ID=Os11t0150200-01;Name=Os11t0150200-01;Locus_id=Os11g0150200;Note=Conserved hypothetical protein.;Transcript_evidence=AK119270 (DDBJ%2C Best hit);ORF_evidence=B9F6F2 (UniProt);NIAS_FLcDNA=001-130-A10;TENOR=Os11t0150200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	2335086	2335566	.	+	.	Parent=Os11t0150200-01
Chr11	irgsp1_rep	five_prime_UTR	2336101	2336151	.	+	.	Parent=Os11t0150200-01
Chr11	irgsp1_rep	five_prime_UTR	2336498	2336523	.	+	.	Parent=Os11t0150200-01
Chr11	irgsp1_rep	five_prime_UTR	2336782	2336844	.	+	.	Parent=Os11t0150200-01
Chr11	irgsp1_rep	five_prime_UTR	2337237	2337648	.	+	.	Parent=Os11t0150200-01
Chr11	irgsp1_rep	CDS	2337649	2337737	.	+	0	Parent=Os11t0150200-01
Chr11	irgsp1_rep	CDS	2337838	2337940	.	+	1	Parent=Os11t0150200-01
Chr11	irgsp1_rep	CDS	2338753	2338890	.	+	0	Parent=Os11t0150200-01
Chr11	irgsp1_rep	CDS	2339428	2339655	.	+	0	Parent=Os11t0150200-01
Chr11	irgsp1_rep	three_prime_UTR	2339656	2341117	.	+	.	Parent=Os11t0150200-01
Chr11	irgsp1_rep	mRNA	2343622	2344673	.	-	.	ID=Os11t0150400-01;Name=Os11t0150400-01;Locus_id=Os11g0150400;Note=Stress responsive alpha-beta barrel domain containing protein.;Transcript_evidence=AK058243 (DDBJ%2C Best hit),AK099186 (DDBJ%2C Best hit);ORF_evidence=GeneMark;InterPro=Dimeric alpha-beta barrel (IPR011008),Stress responsive alpha-beta barrel (IPR013097);NIAS_FLcDNA=001-011-H08,J023101N09;TENOR=Os11t0150400-01
Chr11	irgsp1_rep	five_prime_UTR	2344584	2344673	.	-	.	Parent=Os11t0150400-01
Chr11	irgsp1_rep	CDS	2344465	2344583	.	-	0	Parent=Os11t0150400-01
Chr11	irgsp1_rep	CDS	2343902	2344124	.	-	1	Parent=Os11t0150400-01
Chr11	irgsp1_rep	three_prime_UTR	2343622	2343901	.	-	.	Parent=Os11t0150400-01
Chr11	irgsp1_rep	mRNA	2343622	2344670	.	-	.	ID=Os11t0150400-02;Name=Os11t0150400-02;Locus_id=Os11g0150400;Note=Similar to pop3 peptide.;Transcript_evidence=AK061232 (DDBJ%2C Best hit);ORF_evidence=NP_001149619.1 (RefSeq);InterPro=Dimeric alpha-beta barrel (IPR011008),Stress responsive alpha-beta barrel (IPR013097);NIAS_FLcDNA=006-211-B02;TENOR=Os11t0150400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	2344187	2344670	.	-	.	Parent=Os11t0150400-02
Chr11	irgsp1_rep	CDS	2343902	2344186	.	-	0	Parent=Os11t0150400-02
Chr11	irgsp1_rep	three_prime_UTR	2343622	2343901	.	-	.	Parent=Os11t0150400-02
Chr11	irgsp1_rep	mRNA	2345516	2348240	.	-	.	ID=Os11t0150450-01;Name=Os11t0150450-01;Locus_id=Os11g0150450;Note=Similar to Zinc finger%2C C3HC4 type family protein%2C expressed.;Transcript_evidence=AK243692 (DDBJ%2C Best hit);ORF_evidence=Q2QXP1 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J100090P21;TENOR=Os11t0150450-01;KEGG=Os11t0150450-01
Chr11	irgsp1_rep	five_prime_UTR	2348117	2348240	.	-	.	Parent=Os11t0150450-01
Chr11	irgsp1_rep	CDS	2347797	2348116	.	-	0	Parent=Os11t0150450-01
Chr11	irgsp1_rep	CDS	2345730	2346171	.	-	1	Parent=Os11t0150450-01
Chr11	irgsp1_rep	three_prime_UTR	2345516	2345729	.	-	.	Parent=Os11t0150450-01
Chr11	irgsp1_rep	mRNA	2351082	2352005	.	+	.	ID=Os11t0150632-00;Name=Os11t0150632-00;Locus_id=Os11g0150632;Note=Similar to H0101F08.9 protein.;Transcript_evidence=AK067186 (DDBJ%2C Secondary hit);ORF_evidence=Q259I4 (UniProt);Expression=AK067186;TENOR=Os11t0150632-00;KEGG=Os11t0150632-00
Chr11	irgsp1_rep	five_prime_UTR	2351082	2351163	.	+	.	Parent=Os11t0150632-00
Chr11	irgsp1_rep	five_prime_UTR	2351170	2351338	.	+	.	Parent=Os11t0150632-00
Chr11	irgsp1_rep	CDS	2351339	2351584	.	+	0	Parent=Os11t0150632-00
Chr11	irgsp1_rep	three_prime_UTR	2351585	2352005	.	+	.	Parent=Os11t0150632-00
Chr11	irgsp1_rep	mRNA	2356476	2360843	.	+	.	ID=Os11t0150700-00;Name=Os11t0150700-00;Locus_id=Os11g0150700;CGSNL Gene Symbol=PIDL1;CGSNL Gene Name=PINOID-LIKE 1;Oryzabase Gene Symbol Synonym(s)=OsPIDL1;Oryzabase Gene Name Synonym(s)=PINOID-like 1;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_190047.2 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);Oryzabase=22829;TENOR=Os11t0150700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	2356476	2356963	.	+	0	Parent=Os11t0150700-00
Chr11	irgsp1_rep	CDS	2359955	2360843	.	+	1	Parent=Os11t0150700-00
Chr11	irgsp1_rep	mRNA	2363882	2364482	.	+	.	ID=Os11t0150800-01;Name=Os11t0150800-01;Locus_id=Os11g0150800;Note=Hypothetical protein.;Transcript_evidence=AK107875 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-134-C12;Expression=AK107875;TENOR=Os11t0150800-01;KEGG=Os11t0150800-01
Chr11	irgsp1_rep	five_prime_UTR	2363882	2363916	.	+	.	Parent=Os11t0150800-01
Chr11	irgsp1_rep	CDS	2363917	2364159	.	+	0	Parent=Os11t0150800-01
Chr11	irgsp1_rep	three_prime_UTR	2364160	2364482	.	+	.	Parent=Os11t0150800-01
Chr11	irgsp1_rep	mRNA	2359925	2360755	.	-	.	ID=Os11t0150801-00;Name=Os11t0150801-00;Locus_id=Os11g0150801;Note=Hypothetical protein.;Transcript_evidence=EU943630 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0150801-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	2360754	2360755	.	-	.	Parent=Os11t0150801-00
Chr11	irgsp1_rep	CDS	2359925	2360753	.	-	0	Parent=Os11t0150801-00
Chr11	irgsp1_rep	mRNA	2367903	2372136	.	-	.	ID=Os11t0151002-00;Name=Os11t0151002-00;Locus_id=Os11g0151002;Note=Similar to Calmodulin binding protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B6SL12 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);TENOR=Os11t0151002-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	2371937	2372136	.	-	0	Parent=Os11t0151002-00
Chr11	irgsp1_rep	CDS	2370605	2370716	.	-	1	Parent=Os11t0151002-00
Chr11	irgsp1_rep	CDS	2370348	2370413	.	-	0	Parent=Os11t0151002-00
Chr11	irgsp1_rep	CDS	2369917	2370005	.	-	0	Parent=Os11t0151002-00
Chr11	irgsp1_rep	CDS	2369624	2369711	.	-	1	Parent=Os11t0151002-00
Chr11	irgsp1_rep	CDS	2369313	2369450	.	-	0	Parent=Os11t0151002-00
Chr11	irgsp1_rep	CDS	2369091	2369183	.	-	0	Parent=Os11t0151002-00
Chr11	irgsp1_rep	CDS	2368556	2368654	.	-	0	Parent=Os11t0151002-00
Chr11	irgsp1_rep	CDS	2367903	2368442	.	-	0	Parent=Os11t0151002-00
Chr11	irgsp1_rep	mRNA	2379549	2381295	.	-	.	ID=Os11t0151200-01;Name=Os11t0151200-01;Locus_id=Os11g0151200;Note=Hypothetical protein.;Transcript_evidence=AK106826 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-116-E12;Expression=AK106826;TENOR=Os11t0151200-01;KEGG=Os11t0151200-01
Chr11	irgsp1_rep	five_prime_UTR	2380378	2381295	.	-	.	Parent=Os11t0151200-01
Chr11	irgsp1_rep	CDS	2379604	2380377	.	-	0	Parent=Os11t0151200-01
Chr11	irgsp1_rep	three_prime_UTR	2379549	2379603	.	-	.	Parent=Os11t0151200-01
Chr11	irgsp1_rep	mRNA	2382462	2383247	.	-	.	ID=Os11t0151300-01;Name=Os11t0151300-01;Locus_id=Os11g0151300;CGSNL Gene Symbol=RPL26.1;CGSNL Gene Name=RIBOSOMAL PROTEIN L26.1;Oryzabase Gene Symbol Synonym(s)=OsRPL26.1;Oryzabase Gene Name Synonym(s)=ribosomal protein L26.1%2C ribosomal protein large subunit 26.1;Note=Similar to 60S ribosomal protein L26-1.;Transcript_evidence=AK121546 (DDBJ%2C Best hit);ORF_evidence=B6TPG2 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: large ribosomal subunit (GO:0015934),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L26/L24P%2C eukaryotic/archaeal (IPR005756),KOW (IPR005824),Ribosomal protein L24/L26%2C conserved site (IPR005825),Translation protein SH3-like (IPR008991),Ribosomal protein L24%2C SH3-like (IPR014723);NIAS_FLcDNA=J033032E14;Oryzabase=22198;Expression=AK121546;TENOR=Os11t0151300-01;KEGG=Os11t0151300-01
Chr11	irgsp1_rep	five_prime_UTR	2383190	2383247	.	-	.	Parent=Os11t0151300-01
Chr11	irgsp1_rep	CDS	2382728	2383189	.	-	0	Parent=Os11t0151300-01
Chr11	irgsp1_rep	three_prime_UTR	2382462	2382727	.	-	.	Parent=Os11t0151300-01
Chr11	irgsp1_rep	mRNA	2390496	2392366	.	-	.	ID=Os11t0151400-01;Name=Os11t0151400-01;Locus_id=Os11g0151400;CGSNL Gene Symbol=CYP94C2;CGSNL Gene Name=CYTOCHROME P450 94C2;Oryzabase Gene Symbol Synonym(s)=OsCYP94C2%2C CYP94C2a%2C OsCYP94C2a;Oryzabase Gene Name Synonym(s)=CytoChrome P450 94C2;Note=CytoChrome P450 family protein.;Transcript_evidence=AK106404 (DDBJ%2C Best hit);ORF_evidence=Q2QXN4 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);NIAS_FLcDNA=002-102-G11;Oryzabase=21845;Expression=AK106404;TENOR=Os11t0151400-01;KEGG=Os11t0151400-01
Chr11	irgsp1_rep	five_prime_UTR	2392310	2392366	.	-	.	Parent=Os11t0151400-01
Chr11	irgsp1_rep	CDS	2390747	2392309	.	-	0	Parent=Os11t0151400-01
Chr11	irgsp1_rep	three_prime_UTR	2390496	2390746	.	-	.	Parent=Os11t0151400-01
Chr11	irgsp1_rep	mRNA	2413598	2417423	.	-	.	ID=Os11t0151500-01;Name=Os11t0151500-01;Locus_id=Os11g0151500;CGSNL Gene Symbol=ENA1;CGSNL Gene Name=EFFLUX TRANSPORTER OF NICOTIANAMINE 1;Oryzabase Gene Symbol Synonym(s)=OsENA1;Oryzabase Gene Name Synonym(s)=Efflux transporter of nicotianamine 1;Note=Major facilitator superfamily protein.;Transcript_evidence=AK102457 (DDBJ%2C Best hit);ORF_evidence=Q53Q54 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215);InterPro=Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J033094B15;Oryzabase=10276;Expression=AK102457;TENOR=Os11t0151500-01;KEGG=Os11t0151500-01
Chr11	irgsp1_rep	CDS	2417244	2417423	.	-	0	Parent=Os11t0151500-01
Chr11	irgsp1_rep	CDS	2416711	2416822	.	-	0	Parent=Os11t0151500-01
Chr11	irgsp1_rep	CDS	2416439	2416551	.	-	2	Parent=Os11t0151500-01
Chr11	irgsp1_rep	CDS	2416102	2416224	.	-	0	Parent=Os11t0151500-01
Chr11	irgsp1_rep	CDS	2415823	2415998	.	-	0	Parent=Os11t0151500-01
Chr11	irgsp1_rep	CDS	2415503	2415578	.	-	1	Parent=Os11t0151500-01
Chr11	irgsp1_rep	CDS	2415334	2415420	.	-	0	Parent=Os11t0151500-01
Chr11	irgsp1_rep	CDS	2415149	2415229	.	-	0	Parent=Os11t0151500-01
Chr11	irgsp1_rep	CDS	2415026	2415058	.	-	0	Parent=Os11t0151500-01
Chr11	irgsp1_rep	CDS	2414860	2414913	.	-	0	Parent=Os11t0151500-01
Chr11	irgsp1_rep	CDS	2414607	2414648	.	-	0	Parent=Os11t0151500-01
Chr11	irgsp1_rep	CDS	2414409	2414487	.	-	0	Parent=Os11t0151500-01
Chr11	irgsp1_rep	CDS	2414225	2414295	.	-	2	Parent=Os11t0151500-01
Chr11	irgsp1_rep	CDS	2414025	2414141	.	-	0	Parent=Os11t0151500-01
Chr11	irgsp1_rep	three_prime_UTR	2413598	2414024	.	-	.	Parent=Os11t0151500-01
Chr11	irgsp1_rep	mRNA	2418519	2423365	.	-	.	ID=Os11t0151600-01;Name=Os11t0151600-01;Locus_id=Os11g0151600;Note=Similar to Major Facilitator Superfamily protein%2C expressed.;Transcript_evidence=AK103658 (DDBJ%2C Best hit);ORF_evidence=Q53Q54 (UniProt);GO=Biological Process: RNA metabolic process (GO:0016070),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=MIF4G-like%2C type 3 (IPR003890),MIF4-like%2C type 1/2/3 (IPR016021),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033135G24;TENOR=Os11t0151600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	2423147	2423365	.	-	.	Parent=Os11t0151600-01
Chr11	irgsp1_rep	CDS	2422466	2423146	.	-	0	Parent=Os11t0151600-01
Chr11	irgsp1_rep	CDS	2422249	2422314	.	-	0	Parent=Os11t0151600-01
Chr11	irgsp1_rep	three_prime_UTR	2422188	2422248	.	-	.	Parent=Os11t0151600-01
Chr11	irgsp1_rep	three_prime_UTR	2422030	2422096	.	-	.	Parent=Os11t0151600-01
Chr11	irgsp1_rep	three_prime_UTR	2421456	2421546	.	-	.	Parent=Os11t0151600-01
Chr11	irgsp1_rep	three_prime_UTR	2421269	2421371	.	-	.	Parent=Os11t0151600-01
Chr11	irgsp1_rep	three_prime_UTR	2420770	2421068	.	-	.	Parent=Os11t0151600-01
Chr11	irgsp1_rep	three_prime_UTR	2419598	2419903	.	-	.	Parent=Os11t0151600-01
Chr11	irgsp1_rep	three_prime_UTR	2418999	2419504	.	-	.	Parent=Os11t0151600-01
Chr11	irgsp1_rep	three_prime_UTR	2418519	2418912	.	-	.	Parent=Os11t0151600-01
Chr11	irgsp1_rep	mRNA	2423636	2426379	.	-	.	ID=Os11t0151700-01;Name=Os11t0151700-01;Locus_id=Os11g0151700;RAP-DB Gene Symbol Synonym(s)=OsPAP21b%2C PAP21B;RAP-DB Gene Name Synonym(s)=PURPLE ACID PHOSPHATASE 21B%2C purple acid phosphatase 21b;CGSNL Gene Symbol=PAP21B;CGSNL Gene Name=PURPLE ACID PHOSPHATASE 21B;Oryzabase Gene Symbol Synonym(s)=OsPAP21b;Oryzabase Gene Name Synonym(s)=purple acid phosphatase 21b;Note=Purple acid phosphatase (EC:3.1.3.2)%2C Improvement in phosphate acquisition and utilization;Transcript_evidence=AK073222;ORF_evidence=Q0IUK1;GO=Molecular Function: acid phosphatase activity (GO:0003993),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: metal ion binding (GO:0046872);InterPro=Purple acid phosphatase-like%2C N-terminal (IPR008963),Purple acid phosphatase%2C N-terminal (IPR015914),Metallo-dependent phosphatase-like (IPR029052),Calcineurin-like phosphoesterase domain%2C ApaH type (IPR004843),Iron/zinc purple acid phosphatase-like C-terminal domain (IPR025733);NIAS_FLcDNA=J033024D09;Manual Curation=June 12%2C 2017;Literature_PMID=28116829;Oryzabase=11391;TENOR=Os11t0151700-01
Chr11	irgsp1_rep	five_prime_UTR	2426216	2426379	.	-	.	Parent=Os11t0151700-01
Chr11	irgsp1_rep	CDS	2426072	2426215	.	-	0	Parent=Os11t0151700-01
Chr11	irgsp1_rep	CDS	2424653	2425525	.	-	0	Parent=Os11t0151700-01
Chr11	irgsp1_rep	CDS	2424487	2424575	.	-	0	Parent=Os11t0151700-01
Chr11	irgsp1_rep	CDS	2423896	2424133	.	-	1	Parent=Os11t0151700-01
Chr11	irgsp1_rep	three_prime_UTR	2423636	2423895	.	-	.	Parent=Os11t0151700-01
Chr11	irgsp1_rep	mRNA	2432926	2437010	.	+	.	ID=Os11t0151800-01;Name=Os11t0151800-01;Locus_id=Os11g0151800;CGSNL Gene Symbol=PAP20A;CGSNL Gene Name=PURPLE ACID PHOSPHATASE 20A;Oryzabase Gene Symbol Synonym(s)=OsPAP20a;Oryzabase Gene Name Synonym(s)=purple acid phosphatase 20a;Note=Similar to ATPAP18/PAP18.;Transcript_evidence=AK242043 (DDBJ%2C Best hit);ORF_evidence=XP_002883248.1 (RefSeq);GO=Molecular Function: acid phosphatase activity (GO:0003993),Molecular Function: protein binding (GO:0005515),Molecular Function: metal ion binding (GO:0046872);InterPro=Fibronectin%2C type III (IPR003961),Purple acid phosphatase-like%2C N-terminal (IPR008963),Purple acid phosphatase%2C N-terminal (IPR015914);NIAS_FLcDNA=J075119H10;Oryzabase=11388;TENOR=Os11t0151800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	2432926	2432988	.	+	.	Parent=Os11t0151800-01
Chr11	irgsp1_rep	CDS	2432989	2433162	.	+	0	Parent=Os11t0151800-01
Chr11	irgsp1_rep	CDS	2435250	2435484	.	+	0	Parent=Os11t0151800-01
Chr11	irgsp1_rep	CDS	2436657	2436832	.	+	2	Parent=Os11t0151800-01
Chr11	irgsp1_rep	three_prime_UTR	2436833	2437010	.	+	.	Parent=Os11t0151800-01
Chr11	irgsp1_rep	mRNA	2448169	2448619	.	+	.	ID=Os11t0152025-00;Name=Os11t0152025-00;Locus_id=Os11g0152025;Note=Conserved hypothetical protein.;Transcript_evidence=EU958374 (DDBJ);ORF_evidence=Q53Q65 (UniProt);TENOR=Os11t0152025-00
Chr11	irgsp1_rep	five_prime_UTR	2448169	2448178	.	+	.	Parent=Os11t0152025-00
Chr11	irgsp1_rep	CDS	2448179	2448619	.	+	0	Parent=Os11t0152025-00
Chr11	irgsp1_rep	mRNA	2451942	2457567	.	+	.	ID=Os11t0152400-01;Name=Os11t0152400-01;Locus_id=Os11g0152400;Note=Hypothetical conserved gene.;Transcript_evidence=AK111412 (DDBJ%2C Best hit);ORF_evidence=NP_001066171.1 (RefSeq);NIAS_FLcDNA=002-182-F09;Expression=AK111412;TENOR=Os11t0152400-01;KEGG=Os11t0152400-01
Chr11	irgsp1_rep	five_prime_UTR	2451942	2452139	.	+	.	Parent=Os11t0152400-01
Chr11	irgsp1_rep	five_prime_UTR	2452997	2453065	.	+	.	Parent=Os11t0152400-01
Chr11	irgsp1_rep	CDS	2453066	2453380	.	+	0	Parent=Os11t0152400-01
Chr11	irgsp1_rep	three_prime_UTR	2453381	2453478	.	+	.	Parent=Os11t0152400-01
Chr11	irgsp1_rep	three_prime_UTR	2455135	2455212	.	+	.	Parent=Os11t0152400-01
Chr11	irgsp1_rep	three_prime_UTR	2456892	2457567	.	+	.	Parent=Os11t0152400-01
Chr11	irgsp1_rep	mRNA	2451959	2455673	.	+	.	ID=Os11t0152400-02;Name=Os11t0152400-02;Locus_id=Os11g0152400;Note=Hypothetical conserved gene.;Transcript_evidence=AK103278 (DDBJ%2C Best hit);ORF_evidence=NP_001066171.1 (RefSeq);NIAS_FLcDNA=J033124L04;Expression=AK103278;TENOR=Os11t0152400-02;KEGG=Os11t0152400-02
Chr11	irgsp1_rep	five_prime_UTR	2451959	2452139	.	+	.	Parent=Os11t0152400-02
Chr11	irgsp1_rep	five_prime_UTR	2452997	2453065	.	+	.	Parent=Os11t0152400-02
Chr11	irgsp1_rep	CDS	2453066	2453380	.	+	0	Parent=Os11t0152400-02
Chr11	irgsp1_rep	three_prime_UTR	2453381	2453478	.	+	.	Parent=Os11t0152400-02
Chr11	irgsp1_rep	three_prime_UTR	2455138	2455673	.	+	.	Parent=Os11t0152400-02
Chr11	irgsp1_rep	mRNA	2452773	2454103	.	-	.	ID=Os11t0152500-01;Name=Os11t0152500-01;Locus_id=Os11g0152500;RAP-DB Gene Symbol Synonym(s)=RCN1%2C FDR2;RAP-DB Gene Name Synonym(s)=rice TERMINAL FLOWER 1/CENTRORADIALIS homolog 1%2C Cen-like protein FDR2;CGSNL Gene Symbol=RCN1;CGSNL Gene Name=RICE TERMINAL FLOWER 1/CENTRORADIALIS HOMOLOG 1;Oryzabase Gene Symbol Synonym(s)=Rcn1%2C FDR2%2C Fdr2%2C RCN1/FDR2%2C OsRCN1;Oryzabase Gene Name Synonym(s)=Cen-like protein FDR2%2C RICE CENTRORADIALIS 1;Note=Putative phosphatidylethanolamine-binding protein%2C Rice TFL1/CEN homolog%2C Control of inflorescence architecture%2C Repression of  flowering;Transcript_evidence=AF159882 (Guang Lu Ai 4%2C indica);ORF_evidence=Q53Q71,Q9XGS5;GO=Biological Process: negative regulation of flower development (GO:0009910),Molecular Function: transcription cofactor activity (GO:0003712);InterPro=Phosphatidylethanolamine-binding protein (IPR008914),TERMINAL FLOWER 1-like (IPR031114),Phosphatidylethanolamine-binding%2C conserved site (IPR001858);Manual Curation=July 14%2C 2017;Literature_PMID=12148532,DOI:10.1016/j.plantsci.2004.10.022;Oryzabase=6602;Expression=AF159882;TENOR=Os11t0152500-00;KEGG=Os11t0152500-00
Chr11	irgsp1_rep	five_prime_UTR	2454011	2454103	.	-	.	Parent=Os11t0152500-01
Chr11	irgsp1_rep	CDS	2453810	2454010	.	-	0	Parent=Os11t0152500-01
Chr11	irgsp1_rep	CDS	2453676	2453737	.	-	0	Parent=Os11t0152500-01
Chr11	irgsp1_rep	CDS	2453422	2453462	.	-	1	Parent=Os11t0152500-01
Chr11	irgsp1_rep	CDS	2453108	2453325	.	-	2	Parent=Os11t0152500-01
Chr11	irgsp1_rep	three_prime_UTR	2452773	2453107	.	-	.	Parent=Os11t0152500-01
Chr11	irgsp1_rep	mRNA	2458108	2460823	.	-	.	ID=Os11t0152600-01;Name=Os11t0152600-01;Locus_id=Os11g0152600;Note=Conserved hypothetical protein.;Transcript_evidence=AK066868 (DDBJ%2C Best hit);ORF_evidence=NP_001066177.1 (RefSeq);NIAS_FLcDNA=J013083L04;TENOR=Os11t0152600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	2460822	2460823	.	-	.	Parent=Os11t0152600-01
Chr11	irgsp1_rep	CDS	2460744	2460821	.	-	0	Parent=Os11t0152600-01
Chr11	irgsp1_rep	CDS	2459179	2459223	.	-	0	Parent=Os11t0152600-01
Chr11	irgsp1_rep	three_prime_UTR	2458448	2459178	.	-	.	Parent=Os11t0152600-01
Chr11	irgsp1_rep	three_prime_UTR	2458108	2458368	.	-	.	Parent=Os11t0152600-01
Chr11	irgsp1_rep	mRNA	2457886	2458803	.	-	.	ID=Os11t0152600-02;Name=Os11t0152600-02;Locus_id=Os11g0152600;Note=Non-protein coding transcript.;Transcript_evidence=AK063047 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-110-E01;TENOR=Os11t0152600-02
Chr11	irgsp1_rep	exon	2458448	2458803	.	-	.	Parent=Os11t0152600-02
Chr11	irgsp1_rep	exon	2457886	2458368	.	-	.	Parent=Os11t0152600-02
Chr11	irgsp1_rep	mRNA	2462462	2468733	.	-	.	ID=Os11t0152700-01;Name=Os11t0152700-01;Locus_id=Os11g0152700;CGSNL Gene Symbol=BZIP79;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 79;Oryzabase Gene Symbol Synonym(s)=OsbZIP79;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 79;Note=Similar to Transcription factor HBP-1b(C38) (Fragment).;Transcript_evidence=AK069411 (DDBJ%2C Best hit);ORF_evidence=D3U2G1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);NIAS_FLcDNA=J023013G15;Oryzabase=10158;Expression=AK069411;TENOR=Os11t0152700-01;KEGG=Os11t0152700-01
Chr11	irgsp1_rep	five_prime_UTR	2468465	2468733	.	-	.	Parent=Os11t0152700-01
Chr11	irgsp1_rep	five_prime_UTR	2468232	2468339	.	-	.	Parent=Os11t0152700-01
Chr11	irgsp1_rep	CDS	2468125	2468231	.	-	0	Parent=Os11t0152700-01
Chr11	irgsp1_rep	CDS	2467645	2467772	.	-	1	Parent=Os11t0152700-01
Chr11	irgsp1_rep	CDS	2467111	2467208	.	-	2	Parent=Os11t0152700-01
Chr11	irgsp1_rep	CDS	2466810	2466956	.	-	0	Parent=Os11t0152700-01
Chr11	irgsp1_rep	CDS	2465624	2465683	.	-	0	Parent=Os11t0152700-01
Chr11	irgsp1_rep	CDS	2465402	2465461	.	-	0	Parent=Os11t0152700-01
Chr11	irgsp1_rep	CDS	2465247	2465324	.	-	0	Parent=Os11t0152700-01
Chr11	irgsp1_rep	CDS	2465107	2465146	.	-	0	Parent=Os11t0152700-01
Chr11	irgsp1_rep	CDS	2464732	2465003	.	-	2	Parent=Os11t0152700-01
Chr11	irgsp1_rep	CDS	2464250	2464489	.	-	0	Parent=Os11t0152700-01
Chr11	irgsp1_rep	CDS	2463314	2463456	.	-	0	Parent=Os11t0152700-01
Chr11	irgsp1_rep	CDS	2462656	2462737	.	-	1	Parent=Os11t0152700-01
Chr11	irgsp1_rep	three_prime_UTR	2462462	2462655	.	-	.	Parent=Os11t0152700-01
Chr11	irgsp1_rep	mRNA	2462433	2468586	.	-	.	ID=Os11t0152700-02;Name=Os11t0152700-02;Locus_id=Os11g0152700;CGSNL Gene Symbol=BZIP79;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 79;Oryzabase Gene Symbol Synonym(s)=OsbZIP79;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 79;Note=Similar to Transcription factor HBP-1b(C38) (Fragment).;Transcript_evidence=AK102690 (DDBJ%2C Best hit);ORF_evidence=D3U2G1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);NIAS_FLcDNA=J033103B09;Oryzabase=10158;Expression=AK102690;TENOR=Os11t0152700-02;KEGG=Os11t0152700-02
Chr11	irgsp1_rep	five_prime_UTR	2468465	2468586	.	-	.	Parent=Os11t0152700-02
Chr11	irgsp1_rep	five_prime_UTR	2468232	2468339	.	-	.	Parent=Os11t0152700-02
Chr11	irgsp1_rep	CDS	2468125	2468231	.	-	0	Parent=Os11t0152700-02
Chr11	irgsp1_rep	CDS	2467645	2467772	.	-	1	Parent=Os11t0152700-02
Chr11	irgsp1_rep	CDS	2467111	2467208	.	-	2	Parent=Os11t0152700-02
Chr11	irgsp1_rep	CDS	2466810	2466956	.	-	0	Parent=Os11t0152700-02
Chr11	irgsp1_rep	CDS	2465624	2465683	.	-	0	Parent=Os11t0152700-02
Chr11	irgsp1_rep	CDS	2465402	2465461	.	-	0	Parent=Os11t0152700-02
Chr11	irgsp1_rep	CDS	2465247	2465324	.	-	0	Parent=Os11t0152700-02
Chr11	irgsp1_rep	CDS	2465107	2465146	.	-	0	Parent=Os11t0152700-02
Chr11	irgsp1_rep	CDS	2464732	2465003	.	-	2	Parent=Os11t0152700-02
Chr11	irgsp1_rep	CDS	2464250	2464489	.	-	0	Parent=Os11t0152700-02
Chr11	irgsp1_rep	CDS	2463314	2463456	.	-	0	Parent=Os11t0152700-02
Chr11	irgsp1_rep	CDS	2462656	2462737	.	-	1	Parent=Os11t0152700-02
Chr11	irgsp1_rep	three_prime_UTR	2462433	2462655	.	-	.	Parent=Os11t0152700-02
Chr11	irgsp1_rep	mRNA	2476756	2477463	.	-	.	ID=Os11t0153000-01;Name=Os11t0153000-01;Locus_id=Os11g0153000;Note=Conserved hypothetical protein.;Transcript_evidence=AK109321 (DDBJ%2C Best hit);ORF_evidence=A2ZBJ5 (UniProt);NIAS_FLcDNA=002-188-H02;Expression=AK109321;TENOR=Os11t0153000-01;KEGG=Os11t0153000-01
Chr11	irgsp1_rep	five_prime_UTR	2477359	2477463	.	-	.	Parent=Os11t0153000-01
Chr11	irgsp1_rep	CDS	2476993	2477358	.	-	0	Parent=Os11t0153000-01
Chr11	irgsp1_rep	three_prime_UTR	2476756	2476992	.	-	.	Parent=Os11t0153000-01
Chr11	irgsp1_rep	mRNA	2481639	2482137	.	+	.	ID=Os11t0153100-01;Name=Os11t0153100-01;Locus_id=Os11g0153100;Note=Conserved hypothetical protein.;Transcript_evidence=AK063701 (DDBJ%2C Best hit);ORF_evidence=NP_001176940.1 (RefSeq);NIAS_FLcDNA=001-119-G09;TENOR=Os11t0153100-01
Chr11	irgsp1_rep	five_prime_UTR	2481639	2481707	.	+	.	Parent=Os11t0153100-01
Chr11	irgsp1_rep	CDS	2481708	2482137	.	+	0	Parent=Os11t0153100-01
Chr11	irgsp1_rep	mRNA	2488198	2490270	.	+	.	ID=Os11t0153200-01;Name=Os11t0153200-01;Locus_id=Os11g0153200;CGSNL Gene Symbol=ALPHACA10;CGSNL Gene Name=ALPHA-CARBONIC ANHYDRASE 10;Oryzabase Gene Symbol Synonym(s)=OsalphaCA10%2C alphaCA10;Oryzabase Gene Name Synonym(s)=carbonic anhydrase%2C alpha-carbonic anhydrase 10;Note=Carbonic anhydrase%2C CAH1-like domain containing protein.;Transcript_evidence=AK107061 (DDBJ%2C Best hit);ORF_evidence=A2ZBJ8 (UniProt);InterPro=Carbonic anhydrase%2C alpha-class%2C catalytic domain (IPR001148),Carbonic anhydrase%2C alpha-class (IPR023561);NIAS_FLcDNA=002-121-E01;Oryzabase=21004;Expression=AK107061;TENOR=Os11t0153200-01;KEGG=Os11t0153200-01 (EC:4.2.1.1)
Chr11	irgsp1_rep	five_prime_UTR	2488198	2488265	.	+	.	Parent=Os11t0153200-01
Chr11	irgsp1_rep	five_prime_UTR	2488342	2489384	.	+	.	Parent=Os11t0153200-01
Chr11	irgsp1_rep	CDS	2489385	2489933	.	+	0	Parent=Os11t0153200-01
Chr11	irgsp1_rep	three_prime_UTR	2489934	2490270	.	+	.	Parent=Os11t0153200-01
Chr11	irgsp1_rep	mRNA	2490682	2491745	.	-	.	ID=Os11t0153300-01;Name=Os11t0153300-01;Locus_id=Os11g0153300;Note=Conserved hypothetical protein.;Transcript_evidence=AK060118 (DDBJ%2C Best hit);ORF_evidence=A2ZBJ9 (UniProt);NIAS_FLcDNA=006-308-E10;Expression=AK060118;TENOR=Os11t0153300-01;KEGG=Os11t0153300-01
Chr11	irgsp1_rep	five_prime_UTR	2491640	2491745	.	-	.	Parent=Os11t0153300-01
Chr11	irgsp1_rep	CDS	2490914	2491639	.	-	0	Parent=Os11t0153300-01
Chr11	irgsp1_rep	three_prime_UTR	2490682	2490913	.	-	.	Parent=Os11t0153300-01
Chr11	irgsp1_rep	mRNA	2490716	2491687	.	-	.	ID=Os11t0153300-02;Name=Os11t0153300-02;Locus_id=Os11g0153300;Note=Conserved hypothetical protein.;Transcript_evidence=AK102576 (DDBJ%2C Best hit);ORF_evidence=A2ZBJ9 (UniProt);NIAS_FLcDNA=J033097O19;Expression=AK102576;TENOR=Os11t0153300-02;KEGG=Os11t0153300-02
Chr11	irgsp1_rep	five_prime_UTR	2491640	2491687	.	-	.	Parent=Os11t0153300-02
Chr11	irgsp1_rep	CDS	2490914	2491639	.	-	0	Parent=Os11t0153300-02
Chr11	irgsp1_rep	three_prime_UTR	2490716	2490913	.	-	.	Parent=Os11t0153300-02
Chr11	irgsp1_rep	mRNA	2500437	2505233	.	+	.	ID=Os11t0153400-01;Name=Os11t0153400-01;Locus_id=Os11g0153400;Note=Similar to Rac GTPase activating protein 3 (Fragment).;Transcript_evidence=AK071807 (DDBJ%2C Best hit);ORF_evidence=Q53Q57 (UniProt);GO=Biological Process: signal transduction (GO:0007165),Cellular Component: intracellular (GO:0005622),Molecular Function: protein binding (GO:0005515);InterPro=PAK-box/P21-Rho-binding (IPR000095),Rho GTPase-activating protein domain (IPR000198),Rho GTPase activation protein (IPR008936);NIAS_FLcDNA=J023110A09;Expression=AK071807;TENOR=Os11t0153400-01;KEGG=Os11t0153400-01
Chr11	irgsp1_rep	five_prime_UTR	2500437	2500932	.	+	.	Parent=Os11t0153400-01
Chr11	irgsp1_rep	CDS	2500933	2501321	.	+	0	Parent=Os11t0153400-01
Chr11	irgsp1_rep	CDS	2503252	2503372	.	+	1	Parent=Os11t0153400-01
Chr11	irgsp1_rep	CDS	2503497	2503616	.	+	0	Parent=Os11t0153400-01
Chr11	irgsp1_rep	CDS	2504087	2504317	.	+	0	Parent=Os11t0153400-01
Chr11	irgsp1_rep	CDS	2504395	2504973	.	+	0	Parent=Os11t0153400-01
Chr11	irgsp1_rep	three_prime_UTR	2504974	2505233	.	+	.	Parent=Os11t0153400-01
Chr11	irgsp1_rep	mRNA	2500756	2505028	.	-	.	ID=Os11t0153450-00;Name=Os11t0153450-00;Locus_id=Os11g0153450;Note=Hypothetical protein.;Transcript_evidence=tplb0049d09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0153450-00
Chr11	irgsp1_rep	five_prime_UTR	2504622	2505028	.	-	.	Parent=Os11t0153450-00
Chr11	irgsp1_rep	CDS	2504382	2504621	.	-	0	Parent=Os11t0153450-00
Chr11	irgsp1_rep	CDS	2504289	2504312	.	-	0	Parent=Os11t0153450-00
Chr11	irgsp1_rep	three_prime_UTR	2504087	2504288	.	-	.	Parent=Os11t0153450-00
Chr11	irgsp1_rep	three_prime_UTR	2503496	2503616	.	-	.	Parent=Os11t0153450-00
Chr11	irgsp1_rep	three_prime_UTR	2503241	2503371	.	-	.	Parent=Os11t0153450-00
Chr11	irgsp1_rep	three_prime_UTR	2500756	2501308	.	-	.	Parent=Os11t0153450-00
Chr11	irgsp1_rep	mRNA	2506941	2508402	.	+	.	ID=Os11t0153500-01;Name=Os11t0153500-01;Locus_id=Os11g0153500;Note=Protein of unknown function DUF3049 domain containing protein.;Transcript_evidence=AK108190 (DDBJ%2C Best hit);ORF_evidence=A3C8Q8 (UniProt);InterPro=Protein of unknown function DUF3049 (IPR021410);NIAS_FLcDNA=002-140-C01;Expression=AK108190;TENOR=Os11t0153500-01;KEGG=Os11t0153500-01
Chr11	irgsp1_rep	five_prime_UTR	2506941	2507007	.	+	.	Parent=Os11t0153500-01
Chr11	irgsp1_rep	five_prime_UTR	2507258	2507321	.	+	.	Parent=Os11t0153500-01
Chr11	irgsp1_rep	CDS	2507322	2508197	.	+	0	Parent=Os11t0153500-01
Chr11	irgsp1_rep	three_prime_UTR	2508198	2508402	.	+	.	Parent=Os11t0153500-01
Chr11	irgsp1_rep	mRNA	2512383	2517219	.	+	.	ID=Os11t0153600-01;Name=Os11t0153600-01;Locus_id=Os11g0153600;RAP-DB Gene Symbol Synonym(s)=YGL138(t);CGSNL Gene Symbol=YGL138;CGSNL Gene Name=YELLOW-GREEN LEAF 138;Oryzabase Gene Symbol Synonym(s)=YGL138(t)%2C SRP54%2C OsSRP54;Oryzabase Gene Name Synonym(s)=yellow green leaf 138%2C signal recognition particle 54 kDa;Note=Signal recognition particle 54 kDa (SRP54) protein%2C Chloroplast development;Transcript_evidence=AK065028;ORF_evidence=A0A0P0XZ68;GO=Biological Process: SRP-dependent cotranslational protein targeting to membrane (GO:0006614),Molecular Function: GTP binding (GO:0005525),Molecular Function: 7S RNA binding (GO:0008312),Cellular Component: signal recognition particle (GO:0048500);InterPro=Signal recognition particle%2C SRP54 subunit%2C GTPase domain (IPR000897),P-loop containing nucleoside triphosphate hydrolase (IPR027417),Signal recognition particle%2C SRP54 subunit%2C M-domain (IPR004125);NIAS_FLcDNA=J013001G13;Manual Curation=January 31%2C 2017;Literature_PMID=24280537;Oryzabase=22139;TENOR=Os11t0153600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	2512383	2512623	.	+	.	Parent=Os11t0153600-01
Chr11	irgsp1_rep	five_prime_UTR	2512743	2512851	.	+	.	Parent=Os11t0153600-01
Chr11	irgsp1_rep	five_prime_UTR	2513501	2513568	.	+	.	Parent=Os11t0153600-01
Chr11	irgsp1_rep	five_prime_UTR	2513666	2513767	.	+	.	Parent=Os11t0153600-01
Chr11	irgsp1_rep	five_prime_UTR	2514094	2514246	.	+	.	Parent=Os11t0153600-01
Chr11	irgsp1_rep	five_prime_UTR	2514309	2514412	.	+	.	Parent=Os11t0153600-01
Chr11	irgsp1_rep	five_prime_UTR	2514622	2514747	.	+	.	Parent=Os11t0153600-01
Chr11	irgsp1_rep	five_prime_UTR	2514951	2515723	.	+	.	Parent=Os11t0153600-01
Chr11	irgsp1_rep	CDS	2515724	2515867	.	+	0	Parent=Os11t0153600-01
Chr11	irgsp1_rep	CDS	2515958	2516101	.	+	0	Parent=Os11t0153600-01
Chr11	irgsp1_rep	CDS	2516218	2516293	.	+	0	Parent=Os11t0153600-01
Chr11	irgsp1_rep	CDS	2516414	2516499	.	+	2	Parent=Os11t0153600-01
Chr11	irgsp1_rep	CDS	2516622	2516750	.	+	0	Parent=Os11t0153600-01
Chr11	irgsp1_rep	CDS	2516856	2516936	.	+	0	Parent=Os11t0153600-01
Chr11	irgsp1_rep	three_prime_UTR	2516937	2517219	.	+	.	Parent=Os11t0153600-01
Chr11	irgsp1_rep	mRNA	2517481	2521841	.	+	.	ID=Os11t0153700-01;Name=Os11t0153700-01;Locus_id=Os11g0153700;Note=Similar to Signal recognition particle 54 kDa protein%2C chloroplast precursor (SRP54) (54 chloroplast protein) (54CP) (FFC).;Transcript_evidence=AK058576 (DDBJ%2C Best hit);ORF_evidence=NP_196014.1 (RefSeq);GO=Biological Process: SRP-dependent cotranslational protein targeting to membrane (GO:0006614),Cellular Component: signal recognition particle (GO:0048500),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: GTP binding (GO:0005525),Molecular Function: 7S RNA binding (GO:0008312),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=Signal recognition particle%2C SRP54 subunit%2C GTPase (IPR000897),ATPase%2C AAA+ type%2C core (IPR003593),Signal recognition particle%2C SRP54 subunit%2C M-domain (IPR004125),Signal recognition particle%2C SRP (IPR004780),Signal recognition particle%2C SRP54 subunit%2C helical bundle (IPR013822);NIAS_FLcDNA=001-017-F02;Expression=AK058576;TENOR=Os11t0153700-01;KEGG=Os11t0153700-01
Chr11	irgsp1_rep	five_prime_UTR	2517481	2517492	.	+	.	Parent=Os11t0153700-01
Chr11	irgsp1_rep	CDS	2517493	2517672	.	+	0	Parent=Os11t0153700-01
Chr11	irgsp1_rep	CDS	2517762	2517864	.	+	0	Parent=Os11t0153700-01
Chr11	irgsp1_rep	CDS	2517966	2518033	.	+	2	Parent=Os11t0153700-01
Chr11	irgsp1_rep	CDS	2518102	2518203	.	+	0	Parent=Os11t0153700-01
Chr11	irgsp1_rep	CDS	2518405	2518557	.	+	0	Parent=Os11t0153700-01
Chr11	irgsp1_rep	CDS	2518640	2518717	.	+	0	Parent=Os11t0153700-01
Chr11	irgsp1_rep	CDS	2518913	2519038	.	+	0	Parent=Os11t0153700-01
Chr11	irgsp1_rep	CDS	2519342	2519444	.	+	0	Parent=Os11t0153700-01
Chr11	irgsp1_rep	CDS	2519659	2519759	.	+	2	Parent=Os11t0153700-01
Chr11	irgsp1_rep	CDS	2520207	2520344	.	+	0	Parent=Os11t0153700-01
Chr11	irgsp1_rep	CDS	2520438	2520581	.	+	0	Parent=Os11t0153700-01
Chr11	irgsp1_rep	CDS	2520725	2520800	.	+	0	Parent=Os11t0153700-01
Chr11	irgsp1_rep	CDS	2521073	2521158	.	+	2	Parent=Os11t0153700-01
Chr11	irgsp1_rep	CDS	2521277	2521402	.	+	0	Parent=Os11t0153700-01
Chr11	irgsp1_rep	CDS	2521543	2521632	.	+	0	Parent=Os11t0153700-01
Chr11	irgsp1_rep	three_prime_UTR	2521633	2521841	.	+	.	Parent=Os11t0153700-01
Chr11	irgsp1_rep	mRNA	2522193	2528113	.	+	.	ID=Os11t0153800-01;Name=Os11t0153800-01;Locus_id=Os11g0153800;CGSNL Gene Symbol=RPS25;CGSNL Gene Name=RIBOSOMAL PROTEIN S25;Oryzabase Gene Symbol Synonym(s)=RPS25%2C RPS25a%2C OsRPS25%2C OsRPS25a;Oryzabase Gene Name Synonym(s)=Ribosomal protein S25%2C ribosomal protein small subunit 25%2C Ribosomal protein S25a%2C ribosomal protein small subunit 25a;Note=Similar to Ribosomal protein S25 (40S ribosomal 25S subunit).;Transcript_evidence=AK058630 (DDBJ%2C Best hit);ORF_evidence=A6N085 (UniProt);InterPro=Ribosomal protein S25 (IPR004977);NIAS_FLcDNA=001-018-C09;Oryzabase=17693;Expression=AK058630;TENOR=Os11t0153800-01;KEGG=Os11t0153800-01
Chr11	irgsp1_rep	five_prime_UTR	2522193	2522271	.	+	.	Parent=Os11t0153800-01
Chr11	irgsp1_rep	CDS	2522272	2522274	.	+	0	Parent=Os11t0153800-01
Chr11	irgsp1_rep	CDS	2522370	2522444	.	+	0	Parent=Os11t0153800-01
Chr11	irgsp1_rep	CDS	2522552	2522686	.	+	0	Parent=Os11t0153800-01
Chr11	irgsp1_rep	CDS	2527802	2527915	.	+	0	Parent=Os11t0153800-01
Chr11	irgsp1_rep	three_prime_UTR	2527916	2528113	.	+	.	Parent=Os11t0153800-01
Chr11	irgsp1_rep	mRNA	2523949	2524257	.	-	.	ID=Os11t0153851-00;Name=Os11t0153851-00;Locus_id=Os11g0153851;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os11t0153851-00;KEGG=Os11t0153851-00
Chr11	irgsp1_rep	CDS	2523949	2524257	.	-	0	Parent=Os11t0153851-00
Chr11	irgsp1_rep	mRNA	2529744	2532592	.	+	.	ID=Os11t0153900-01;Name=Os11t0153900-01;Locus_id=Os11g0153900;RAP-DB Gene Symbol Synonym(s)=LS1;RAP-DB Gene Name Synonym(s)=local lesions 1;Oryzabase Gene Symbol Synonym(s)=RbH;Note=Ribonuclease H2 large subunit A%2C Response to high  light  and  high  temperature  stress;Transcript_evidence=AK103273;ORF_evidence=Q53QG3;GO=Biological Process: RNA metabolic process (GO:0016070),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA-DNA hybrid ribonuclease activity (GO:0004523);InterPro=Ribonuclease H superfamily (IPR036397),Ribonuclease H-like superfamily (IPR012337),Ribonuclease HII%2C helix-loop-helix cap domain superfamily (IPR023160),Ribonuclease H2%2C subunit A (IPR004649),Ribonuclease HII/HIII domain (IPR024567);NIAS_FLcDNA=J033124I24;Manual Curation=November 20%2C 2018;Literature_PMID=30449034;Oryzabase=19682;Expression=AK103273;TENOR=Os11t0153900-01;KEGG=Os11t0153900-01 (EC:3.1.26.4);Subcellular location=nucleus (GO:0005634)
Chr11	irgsp1_rep	five_prime_UTR	2529744	2529918	.	+	.	Parent=Os11t0153900-01
Chr11	irgsp1_rep	CDS	2529919	2530003	.	+	0	Parent=Os11t0153900-01
Chr11	irgsp1_rep	CDS	2530341	2530412	.	+	2	Parent=Os11t0153900-01
Chr11	irgsp1_rep	CDS	2531196	2531319	.	+	2	Parent=Os11t0153900-01
Chr11	irgsp1_rep	CDS	2531387	2531474	.	+	1	Parent=Os11t0153900-01
Chr11	irgsp1_rep	CDS	2531583	2531720	.	+	0	Parent=Os11t0153900-01
Chr11	irgsp1_rep	CDS	2531868	2531955	.	+	0	Parent=Os11t0153900-01
Chr11	irgsp1_rep	CDS	2532044	2532164	.	+	2	Parent=Os11t0153900-01
Chr11	irgsp1_rep	CDS	2532270	2532450	.	+	1	Parent=Os11t0153900-01
Chr11	irgsp1_rep	three_prime_UTR	2532451	2532592	.	+	.	Parent=Os11t0153900-01
Chr11	irgsp1_rep	mRNA	2532925	2532996	.	+	.	ID=Os11t0154000-00;Name=Os11t0154000-00;Locus_id=Os11g0154000;Note=Non-protein coding transcript.;Transcript_evidence=X06283 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0154000-00
Chr11	irgsp1_rep	exon	2532925	2532996	.	+	.	Parent=Os11t0154000-00
Chr11	irgsp1_rep	mRNA	2539779	2542990	.	+	.	ID=Os11t0154300-01;Name=Os11t0154300-01;Locus_id=Os11g0154300;RAP-DB Gene Symbol Synonym(s)=OsS40-12;RAP-DB Gene Name Synonym(s)=S40 protein 12;CGSNL Gene Symbol=S40-12;CGSNL Gene Name=S40 PROTEIN 12;Oryzabase Gene Symbol Synonym(s)=OsS40-12;Oryzabase Gene Name Synonym(s)=S40 protein 12;Note=A member of S40 gene family%2C Leaf senescence%2C "Regulation of crosstalk among abiotic%2C biotic and developmental senescence";Transcript_evidence=AK072969;ORF_evidence=Q53QG6;InterPro=Senescence regulator S40 (IPR007608);NIAS_FLcDNA=J023144D16;Manual Curation=November 12%2C 2019;Literature_PMID=31046677;Oryzabase=22082;Expression=AK072969;TENOR=Os11t0154300-01;KEGG=Os11t0154300-01
Chr11	irgsp1_rep	five_prime_UTR	2539779	2539887	.	+	.	Parent=Os11t0154300-01
Chr11	irgsp1_rep	CDS	2539888	2540403	.	+	0	Parent=Os11t0154300-01
Chr11	irgsp1_rep	three_prime_UTR	2540404	2540408	.	+	.	Parent=Os11t0154300-01
Chr11	irgsp1_rep	three_prime_UTR	2542560	2542716	.	+	.	Parent=Os11t0154300-01
Chr11	irgsp1_rep	three_prime_UTR	2542815	2542990	.	+	.	Parent=Os11t0154300-01
Chr11	irgsp1_rep	mRNA	2550551	2552963	.	+	.	ID=Os11t0154500-01;Name=Os11t0154500-01;Locus_id=Os11g0154500;RAP-DB Gene Symbol Synonym(s)=NAC17%2C ONAC017%2C ONAC17%2C ONAC030%2C ONAC30%2C OsNAC111;RAP-DB Gene Name Synonym(s)=NAC DOMAIN-CONTAINING PROTEIN 17%2C NAC domain-containing protein 017%2C NAC domain-containing protein 17%2C NAC domain-containing protein 30;CGSNL Gene Symbol=NAC17;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 17;Oryzabase Gene Symbol Synonym(s)=ONAC017%2C ONAC17%2C ONAC030%2C ONAC30%2C OsNAC111;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 017%2C NAC domain-containing protein 17%2C NAC domain-containing protein 30;Note=Blast disease-responsive transcription factor%2C Disease resistance;Transcript_evidence=AK106277;ORF_evidence=Q53QG7;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=NAC domain (IPR003441);NIAS_FLcDNA=002-100-H06;Manual Curation=December 7%2C 2016;Literature_PMID=25014590;Oryzabase=11466;Expression=AK106277;TENOR=Os11t0154500-01;KEGG=Os11t0154500-01
Chr11	irgsp1_rep	five_prime_UTR	2550551	2550704	.	+	.	Parent=Os11t0154500-01
Chr11	irgsp1_rep	CDS	2550705	2551211	.	+	0	Parent=Os11t0154500-01
Chr11	irgsp1_rep	CDS	2551296	2551673	.	+	0	Parent=Os11t0154500-01
Chr11	irgsp1_rep	three_prime_UTR	2551674	2552963	.	+	.	Parent=Os11t0154500-01
Chr11	irgsp1_rep	mRNA	2550674	2551929	.	+	.	ID=Os11t0154500-02;Name=Os11t0154500-02;Locus_id=Os11g0154500;CGSNL Gene Symbol=NAC17;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 17;Oryzabase Gene Symbol Synonym(s)=ONAC017%2C ONAC17%2C ONAC030%2C ONAC30%2C OsNAC111;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 017%2C NAC domain-containing protein 17%2C NAC domain-containing protein 30;Note=No apical meristem (NAM) protein domain containing protein.;Transcript_evidence=AK109939 (DDBJ%2C Best hit);ORF_evidence=Q9SXQ0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=002-154-A12;Oryzabase=11466;Expression=AK109939;TENOR=Os11t0154500-02;KEGG=Os11t0154500-02
Chr11	irgsp1_rep	five_prime_UTR	2550674	2550704	.	+	.	Parent=Os11t0154500-02
Chr11	irgsp1_rep	CDS	2550705	2551211	.	+	0	Parent=Os11t0154500-02
Chr11	irgsp1_rep	CDS	2551296	2551673	.	+	0	Parent=Os11t0154500-02
Chr11	irgsp1_rep	three_prime_UTR	2551674	2551929	.	+	.	Parent=Os11t0154500-02
Chr11	irgsp1_rep	mRNA	2554039	2554803	.	-	.	ID=Os11t0154700-00;Name=Os11t0154700-00;Locus_id=Os11g0154700;Note=Similar to CBL-interacting protein kinase 14.;Transcript_evidence=EU970334 (DDBJ);ORF_evidence=C4P7S4 (UniProt);GO=Biological Process: signal transduction (GO:0007165);InterPro=NAF domain (IPR004041),NAF/FISL domain (IPR018451);TENOR=Os11t0154700-00
Chr11	irgsp1_rep	CDS	2554231	2554803	.	-	0	Parent=Os11t0154700-00
Chr11	irgsp1_rep	three_prime_UTR	2554039	2554230	.	-	.	Parent=Os11t0154700-00
Chr11	irgsp1_rep	mRNA	2560816	2563634	.	+	.	ID=Os11t0154900-01;Name=Os11t0154900-01;Locus_id=Os11g0154900;CGSNL Gene Symbol=ZIP2A;CGSNL Gene Name=BASIC/LEUCINE ZIPPER FACTOR 2A;Oryzabase Gene Symbol Synonym(s)=OsbZIP80%2C OsZIP-2a;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 80%2C basic/leucine zipper protein 2a;Note=Similar to DNA-binding factor of bZIP class (Fragment).;Transcript_evidence=AK287905 (DDBJ%2C Best hit);ORF_evidence=Q53QH0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);NIAS_FLcDNA=J065211O07;Oryzabase=10159;TENOR=Os11t0154900-01;KEGG=Os11t0154900-01
Chr11	irgsp1_rep	five_prime_UTR	2560816	2560953	.	+	.	Parent=Os11t0154900-01
Chr11	irgsp1_rep	CDS	2560954	2561106	.	+	0	Parent=Os11t0154900-01
Chr11	irgsp1_rep	CDS	2561177	2561389	.	+	0	Parent=Os11t0154900-01
Chr11	irgsp1_rep	CDS	2561483	2561560	.	+	0	Parent=Os11t0154900-01
Chr11	irgsp1_rep	CDS	2561670	2561735	.	+	0	Parent=Os11t0154900-01
Chr11	irgsp1_rep	CDS	2561897	2561959	.	+	0	Parent=Os11t0154900-01
Chr11	irgsp1_rep	CDS	2562595	2563206	.	+	0	Parent=Os11t0154900-01
Chr11	irgsp1_rep	three_prime_UTR	2563207	2563634	.	+	.	Parent=Os11t0154900-01
Chr11	irgsp1_rep	mRNA	2565403	2566701	.	+	.	ID=Os11t0155000-01;Name=Os11t0155000-01;Locus_id=Os11g0155000;Note=Dcp1-like decapping family protein.;Transcript_evidence=AK064254 (DDBJ%2C Best hit);ORF_evidence=NP_001149166.1 (RefSeq);InterPro=Dcp1-like decapping (IPR010334);NIAS_FLcDNA=002-105-C08;Expression=AK064254;TENOR=Os11t0155000-01;KEGG=Os11t0155000-01
Chr11	irgsp1_rep	five_prime_UTR	2565403	2565985	.	+	.	Parent=Os11t0155000-01
Chr11	irgsp1_rep	CDS	2565986	2566168	.	+	0	Parent=Os11t0155000-01
Chr11	irgsp1_rep	three_prime_UTR	2566169	2566701	.	+	.	Parent=Os11t0155000-01
Chr11	irgsp1_rep	mRNA	2568996	2570391	.	-	.	ID=Os11t0155100-01;Name=Os11t0155100-01;Locus_id=Os11g0155100;Oryzabase Gene Symbol Synonym(s)=OsFbox568%2C Os_F0335;Oryzabase Gene Name Synonym(s)=F-box protein 568;Note=Similar to F-box domain containing protein.;Transcript_evidence=AK108413 (DDBJ%2C Best hit);ORF_evidence=NP_001151212.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-142-H04;Oryzabase=17337;TENOR=Os11t0155100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	2570247	2570391	.	-	.	Parent=Os11t0155100-01
Chr11	irgsp1_rep	CDS	2569185	2570246	.	-	0	Parent=Os11t0155100-01
Chr11	irgsp1_rep	three_prime_UTR	2568996	2569184	.	-	.	Parent=Os11t0155100-01
Chr11	irgsp1_rep	mRNA	2587668	2588236	.	-	.	ID=Os11t0155350-00;Name=Os11t0155350-00;Locus_id=Os11g0155350;Note=Hypothetical protein.;Transcript_evidence=AK287665 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;TENOR=Os11t0155350-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	2588235	2588236	.	-	.	Parent=Os11t0155350-00
Chr11	irgsp1_rep	CDS	2587929	2588234	.	-	0	Parent=Os11t0155350-00
Chr11	irgsp1_rep	three_prime_UTR	2587668	2587928	.	-	.	Parent=Os11t0155350-00
Chr11	irgsp1_rep	mRNA	2596655	2602434	.	-	.	ID=Os11t0155425-00;Name=Os11t0155425-00;Locus_id=Os11g0155425;Note=Hypothetical protein.;Transcript_evidence=EU957609 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0155425-00
Chr11	irgsp1_rep	five_prime_UTR	2602433	2602434	.	-	.	Parent=Os11t0155425-00
Chr11	irgsp1_rep	CDS	2601883	2602432	.	-	0	Parent=Os11t0155425-00
Chr11	irgsp1_rep	CDS	2601295	2601320	.	-	2	Parent=Os11t0155425-00
Chr11	irgsp1_rep	three_prime_UTR	2601084	2601294	.	-	.	Parent=Os11t0155425-00
Chr11	irgsp1_rep	three_prime_UTR	2600048	2600360	.	-	.	Parent=Os11t0155425-00
Chr11	irgsp1_rep	three_prime_UTR	2598450	2598665	.	-	.	Parent=Os11t0155425-00
Chr11	irgsp1_rep	three_prime_UTR	2596655	2597023	.	-	.	Parent=Os11t0155425-00
Chr11	irgsp1_rep	mRNA	2598116	2602703	.	+	.	ID=Os11t0155500-01;Name=Os11t0155500-01;Locus_id=Os11g0155500;Oryzabase Gene Symbol Synonym(s)=OsCAT8;Oryzabase Gene Name Synonym(s)=cationic amino acid transporter 8;Note=Similar to Amino acid permease family protein%2C expressed.;Transcript_evidence=AK287730 (DDBJ%2C Best hit);ORF_evidence=Q53QH5 (UniProt);GO=Biological Process: amino acid transmembrane transport (GO:0003333),Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: amino acid transmembrane transporter activity (GO:0015171);InterPro=Amino acid/polyamine transporter I (IPR002293),Amino acid permease domain (IPR004841),Cationic amino acid transporter (IPR015606);NIAS_FLcDNA=J065140D09;Oryzabase=18542;TENOR=Os11t0155500-01;KEGG=Os11t0155500-01
Chr11	irgsp1_rep	five_prime_UTR	2598116	2598215	.	+	.	Parent=Os11t0155500-01
Chr11	irgsp1_rep	CDS	2598216	2598237	.	+	0	Parent=Os11t0155500-01
Chr11	irgsp1_rep	CDS	2598452	2598674	.	+	2	Parent=Os11t0155500-01
Chr11	irgsp1_rep	CDS	2600012	2600363	.	+	1	Parent=Os11t0155500-01
Chr11	irgsp1_rep	CDS	2601084	2601315	.	+	0	Parent=Os11t0155500-01
Chr11	irgsp1_rep	CDS	2601873	2602456	.	+	2	Parent=Os11t0155500-01
Chr11	irgsp1_rep	three_prime_UTR	2602457	2602703	.	+	.	Parent=Os11t0155500-01
Chr11	irgsp1_rep	mRNA	2605752	2614119	.	-	.	ID=Os11t0155600-01;Name=Os11t0155600-01;Locus_id=Os11g0155600;CGSNL Gene Symbol=MRP16;CGSNL Gene Name=MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 16;Oryzabase Gene Symbol Synonym(s)=OsABCC16%2C OsMRP16;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCC subgroup member 16%2C multidrug resistance-associated protein 16;Note=Conserved hypothetical protein.;Transcript_evidence=AK065863 (DDBJ%2C Best hit);ORF_evidence=Q53QH6 (UniProt);NIAS_FLcDNA=J013043D07;Oryzabase=11967;TENOR=Os11t0155600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	2613991	2614119	.	-	.	Parent=Os11t0155600-01
Chr11	irgsp1_rep	five_prime_UTR	2613447	2613492	.	-	.	Parent=Os11t0155600-01
Chr11	irgsp1_rep	CDS	2613431	2613446	.	-	0	Parent=Os11t0155600-01
Chr11	irgsp1_rep	CDS	2612422	2613272	.	-	2	Parent=Os11t0155600-01
Chr11	irgsp1_rep	CDS	2610219	2610250	.	-	0	Parent=Os11t0155600-01
Chr11	irgsp1_rep	CDS	2609925	2609928	.	-	1	Parent=Os11t0155600-01
Chr11	irgsp1_rep	three_prime_UTR	2609332	2609924	.	-	.	Parent=Os11t0155600-01
Chr11	irgsp1_rep	three_prime_UTR	2609091	2609255	.	-	.	Parent=Os11t0155600-01
Chr11	irgsp1_rep	three_prime_UTR	2608651	2608945	.	-	.	Parent=Os11t0155600-01
Chr11	irgsp1_rep	three_prime_UTR	2607888	2608102	.	-	.	Parent=Os11t0155600-01
Chr11	irgsp1_rep	three_prime_UTR	2607491	2607796	.	-	.	Parent=Os11t0155600-01
Chr11	irgsp1_rep	three_prime_UTR	2607155	2607218	.	-	.	Parent=Os11t0155600-01
Chr11	irgsp1_rep	three_prime_UTR	2606803	2607042	.	-	.	Parent=Os11t0155600-01
Chr11	irgsp1_rep	three_prime_UTR	2605752	2606410	.	-	.	Parent=Os11t0155600-01
Chr11	irgsp1_rep	mRNA	2625671	2626264	.	-	.	ID=Os11t0155900-00;Name=Os11t0155900-00;Locus_id=Os11g0155900;Oryzabase Gene Symbol Synonym(s)=H3R-21;Oryzabase Gene Name Synonym(s)=H3 histone H3R-21;Note=Histone H3.;Transcript_evidence=U77296 (DDBJ%2C Best hit);ORF_evidence=XP_002299242.1 (RefSeq);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H3 (IPR000164),Histone core (IPR007125),Histone-fold (IPR009072);Oryzabase=13742;Expression=U77296;TENOR=Os11t0155900-00;KEGG=Os11t0155900-00
Chr11	irgsp1_rep	five_prime_UTR	2626221	2626264	.	-	.	Parent=Os11t0155900-00
Chr11	irgsp1_rep	CDS	2625810	2626220	.	-	0	Parent=Os11t0155900-00
Chr11	irgsp1_rep	three_prime_UTR	2625671	2625809	.	-	.	Parent=Os11t0155900-00
Chr11	irgsp1_rep	mRNA	2625812	2626240	.	+	.	ID=Os11t0155950-00;Name=Os11t0155950-00;Locus_id=Os11g0155950;Note=Hypothetical gene.;Transcript_evidence=BT016934 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0155950-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	2625812	2625812	.	+	.	Parent=Os11t0155950-00
Chr11	irgsp1_rep	CDS	2625813	2626238	.	+	0	Parent=Os11t0155950-00
Chr11	irgsp1_rep	three_prime_UTR	2626239	2626240	.	+	.	Parent=Os11t0155950-00
Chr11	irgsp1_rep	mRNA	2628006	2628816	.	+	.	ID=Os11t0155975-00;Name=Os11t0155975-00;Locus_id=Os11g0155975;Note=Non-protein coding transcript.;Transcript_evidence=EU944780 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0155975-00
Chr11	irgsp1_rep	exon	2628006	2628383	.	+	.	Parent=Os11t0155975-00
Chr11	irgsp1_rep	exon	2628539	2628816	.	+	.	Parent=Os11t0155975-00
Chr11	irgsp1_rep	mRNA	2631709	2633563	.	-	.	ID=Os11t0156000-01;Name=Os11t0156000-01;Locus_id=Os11g0156000;CGSNL Gene Symbol=RAP2.8;Oryzabase Gene Symbol Synonym(s)=OsRAP2.8;Oryzabase Gene Name Synonym(s)=RELATED-TO-AP28;Note=Similar to AP2 domain containing protein RAP2.8 (Fragment).;Transcript_evidence=AK070487 (DDBJ%2C Best hit);ORF_evidence=NP_001149371.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=J023049E11;Oryzabase=22356;Expression=AK070487;TENOR=Os11t0156000-01;KEGG=Os11t0156000-01
Chr11	irgsp1_rep	five_prime_UTR	2633478	2633563	.	-	.	Parent=Os11t0156000-01
Chr11	irgsp1_rep	CDS	2632844	2633477	.	-	0	Parent=Os11t0156000-01
Chr11	irgsp1_rep	CDS	2632536	2632728	.	-	2	Parent=Os11t0156000-01
Chr11	irgsp1_rep	CDS	2632424	2632436	.	-	1	Parent=Os11t0156000-01
Chr11	irgsp1_rep	three_prime_UTR	2631709	2632423	.	-	.	Parent=Os11t0156000-01
Chr11	irgsp1_rep	mRNA	2631961	2633451	.	-	.	ID=Os11t0156000-02;Name=Os11t0156000-02;Locus_id=Os11g0156000;CGSNL Gene Symbol=RAP2.8;Oryzabase Gene Symbol Synonym(s)=OsRAP2.8;Oryzabase Gene Name Synonym(s)=RELATED-TO-AP28;Note=Similar to B3 DNA binding domain containing protein.;Transcript_evidence=AK072663 (DDBJ%2C Best hit);ORF_evidence=NP_001149371.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=J023133P15;Oryzabase=22356;Expression=AK072663;TENOR=Os11t0156000-02;KEGG=Os11t0156000-02
Chr11	irgsp1_rep	five_prime_UTR	2633451	2633451	.	-	.	Parent=Os11t0156000-02
Chr11	irgsp1_rep	CDS	2632844	2633450	.	-	0	Parent=Os11t0156000-02
Chr11	irgsp1_rep	CDS	2632536	2632728	.	-	2	Parent=Os11t0156000-02
Chr11	irgsp1_rep	CDS	2632424	2632436	.	-	1	Parent=Os11t0156000-02
Chr11	irgsp1_rep	three_prime_UTR	2631961	2632423	.	-	.	Parent=Os11t0156000-02
Chr11	irgsp1_rep	mRNA	2631990	2633949	.	+	.	ID=Os11t0156050-00;Name=Os11t0156050-00;Locus_id=Os11g0156050;Note=Non-protein coding transcript.;Transcript_evidence=AK375277 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0156050-00
Chr11	irgsp1_rep	exon	2631990	2633949	.	+	.	Parent=Os11t0156050-00
Chr11	irgsp1_rep	mRNA	2638599	2639166	.	+	.	ID=Os11t0156100-01;Name=Os11t0156100-01;Locus_id=Os11g0156100;Note=Non-protein coding transcript.;Transcript_evidence=AK240982 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065049M11;TENOR=Os11t0156100-01
Chr11	irgsp1_rep	exon	2638599	2639166	.	+	.	Parent=Os11t0156100-01
Chr11	irgsp1_rep	mRNA	2640635	2646300	.	-	.	ID=Os11t0156200-01;Name=Os11t0156200-01;Locus_id=Os11g0156200;Oryzabase Gene Symbol Synonym(s)=OsProCP5%2C PROCP5;Oryzabase Gene Name Synonym(s)=Lysosomal Pro-x Carboxypeptidase 5%2C LYSOSOMAL PRO-X CARBOXYPEPTIDASE 5;Note=Peptidase S28 family protein.;Transcript_evidence=AK100124 (DDBJ%2C Best hit);ORF_evidence=B6TWH6 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type peptidase activity (GO:0008236);InterPro=Peptidase S28 (IPR008758);NIAS_FLcDNA=J023007P07;Oryzabase=20053;Expression=AK100124;TENOR=Os11t0156200-01;KEGG=Os11t0156200-01
Chr11	irgsp1_rep	five_prime_UTR	2646253	2646300	.	-	.	Parent=Os11t0156200-01
Chr11	irgsp1_rep	CDS	2645679	2646252	.	-	0	Parent=Os11t0156200-01
Chr11	irgsp1_rep	CDS	2643297	2643430	.	-	2	Parent=Os11t0156200-01
Chr11	irgsp1_rep	CDS	2642967	2643079	.	-	0	Parent=Os11t0156200-01
Chr11	irgsp1_rep	CDS	2642354	2642471	.	-	1	Parent=Os11t0156200-01
Chr11	irgsp1_rep	CDS	2641452	2641775	.	-	0	Parent=Os11t0156200-01
Chr11	irgsp1_rep	CDS	2641276	2641355	.	-	0	Parent=Os11t0156200-01
Chr11	irgsp1_rep	CDS	2641129	2641178	.	-	1	Parent=Os11t0156200-01
Chr11	irgsp1_rep	CDS	2640843	2640985	.	-	2	Parent=Os11t0156200-01
Chr11	irgsp1_rep	three_prime_UTR	2640635	2640842	.	-	.	Parent=Os11t0156200-01
Chr11	irgsp1_rep	mRNA	2659043	2660408	.	+	.	ID=Os11t0156300-01;Name=Os11t0156300-01;Locus_id=Os11g0156300;Oryzabase Gene Symbol Synonym(s)=OsOFP18%2C OsOFP28;Oryzabase Gene Name Synonym(s)=OVATE family protein 18%2C ovate family protein 28%2C OVATE-domain containing protein 28;Note=Protein of unknown function DUF623%2C plant domain containing protein.;Transcript_evidence=AK107140 (DDBJ%2C Best hit);ORF_evidence=A2ZBM6 (UniProt);InterPro=Domain of unknown function DUF623 (IPR006458);NIAS_FLcDNA=002-124-D02;Oryzabase=18314;Expression=AK107140;TENOR=Os11t0156300-01;KEGG=Os11t0156300-01
Chr11	irgsp1_rep	five_prime_UTR	2659043	2659138	.	+	.	Parent=Os11t0156300-01
Chr11	irgsp1_rep	CDS	2659139	2660164	.	+	0	Parent=Os11t0156300-01
Chr11	irgsp1_rep	three_prime_UTR	2660165	2660408	.	+	.	Parent=Os11t0156300-01
Chr11	irgsp1_rep	mRNA	2665216	2666529	.	-	.	ID=Os11t0156401-01;Name=Os11t0156401-01;Locus_id=Os11g0156401;Oryzabase Gene Symbol Synonym(s)=OsOFP26%2C OsOFP29;Oryzabase Gene Name Synonym(s)=OVATE family protein 26%2C ovate family protein 29%2C OVATE-domain containing protein 29;Note=Protein of unknown function DUF623%2C plant domain containing protein.;Transcript_evidence=AK243385 (DDBJ%2C Best hit);ORF_evidence=NP_001151444.1 (RefSeq);InterPro=Domain of unknown function DUF623 (IPR006458);NIAS_FLcDNA=J100063F10;Oryzabase=18322;TENOR=Os11t0156401-01;KEGG=Os11t0156401-01
Chr11	irgsp1_rep	five_prime_UTR	2666427	2666529	.	-	.	Parent=Os11t0156401-01
Chr11	irgsp1_rep	CDS	2665686	2666426	.	-	0	Parent=Os11t0156401-01
Chr11	irgsp1_rep	three_prime_UTR	2665216	2665685	.	-	.	Parent=Os11t0156401-01
Chr11	irgsp1_rep	mRNA	2683005	2684962	.	+	.	ID=Os11t0156600-00;Name=Os11t0156600-00;Locus_id=Os11g0156600;Note=Similar to H0622F05.7 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01LE7 (UniProt);InterPro=TB2/DP1/HVA22-related protein (IPR004345);TENOR=Os11t0156600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	2683005	2683084	.	+	0	Parent=Os11t0156600-00
Chr11	irgsp1_rep	CDS	2684348	2684392	.	+	1	Parent=Os11t0156600-00
Chr11	irgsp1_rep	CDS	2684483	2684546	.	+	1	Parent=Os11t0156600-00
Chr11	irgsp1_rep	CDS	2684687	2684962	.	+	0	Parent=Os11t0156600-00
Chr11	irgsp1_rep	mRNA	2687944	2689079	.	-	.	ID=Os11t0156700-01;Name=Os11t0156700-01;Locus_id=Os11g0156700;Note=Conserved hypothetical protein.;Transcript_evidence=AK108381 (DDBJ%2C Best hit);ORF_evidence=A2ZBN1 (UniProt);NIAS_FLcDNA=002-142-E06;Expression=AK108381;TENOR=Os11t0156700-01;KEGG=Os11t0156700-01
Chr11	irgsp1_rep	five_prime_UTR	2688798	2689079	.	-	.	Parent=Os11t0156700-01
Chr11	irgsp1_rep	CDS	2688234	2688797	.	-	0	Parent=Os11t0156700-01
Chr11	irgsp1_rep	three_prime_UTR	2687944	2688233	.	-	.	Parent=Os11t0156700-01
Chr11	irgsp1_rep	mRNA	2696749	2699523	.	-	.	ID=Os11t0156750-00;Name=Os11t0156750-00;Locus_id=Os11g0156750;Note=Hypothetical protein.;Transcript_evidence=tplb0057f18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0156750-00
Chr11	irgsp1_rep	five_prime_UTR	2698377	2699523	.	-	.	Parent=Os11t0156750-00
Chr11	irgsp1_rep	five_prime_UTR	2697372	2698181	.	-	.	Parent=Os11t0156750-00
Chr11	irgsp1_rep	CDS	2696749	2697371	.	-	0	Parent=Os11t0156750-00
Chr11	irgsp1_rep	mRNA	2697883	2699704	.	+	.	ID=Os11t0156800-01;Name=Os11t0156800-01;Locus_id=Os11g0156800;Note=Conserved hypothetical protein.;Transcript_evidence=AK107423 (DDBJ%2C Best hit);ORF_evidence=Q53ND3 (UniProt);NIAS_FLcDNA=002-127-F09;Expression=AK107423;TENOR=Os11t0156800-01;KEGG=Os11t0156800-01
Chr11	irgsp1_rep	five_prime_UTR	2697883	2697884	.	+	.	Parent=Os11t0156800-01
Chr11	irgsp1_rep	CDS	2697885	2698175	.	+	0	Parent=Os11t0156800-01
Chr11	irgsp1_rep	CDS	2698373	2699485	.	+	0	Parent=Os11t0156800-01
Chr11	irgsp1_rep	three_prime_UTR	2699486	2699704	.	+	.	Parent=Os11t0156800-01
Chr11	irgsp1_rep	mRNA	2713230	2724275	.	-	.	ID=Os11t0157000-00;Name=Os11t0157000-00;Locus_id=Os11g0157000;Note=Putative 5-3 exonuclease domain containing protein.;Transcript_evidence=AK371187 (DDBJ);ORF_evidence=F2E4W3 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: exonuclease activity (GO:0004527);InterPro=Putative 5-3 exonuclease (IPR004859);TENOR=Os11t0157000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	2724089	2724275	.	-	0	Parent=Os11t0157000-00
Chr11	irgsp1_rep	CDS	2723882	2723960	.	-	2	Parent=Os11t0157000-00
Chr11	irgsp1_rep	CDS	2723701	2723777	.	-	1	Parent=Os11t0157000-00
Chr11	irgsp1_rep	CDS	2723486	2723568	.	-	2	Parent=Os11t0157000-00
Chr11	irgsp1_rep	three_prime_UTR	2723368	2723485	.	-	.	Parent=Os11t0157000-00
Chr11	irgsp1_rep	three_prime_UTR	2717848	2717967	.	-	.	Parent=Os11t0157000-00
Chr11	irgsp1_rep	three_prime_UTR	2717614	2717725	.	-	.	Parent=Os11t0157000-00
Chr11	irgsp1_rep	three_prime_UTR	2717180	2717344	.	-	.	Parent=Os11t0157000-00
Chr11	irgsp1_rep	three_prime_UTR	2717013	2717090	.	-	.	Parent=Os11t0157000-00
Chr11	irgsp1_rep	three_prime_UTR	2716822	2716934	.	-	.	Parent=Os11t0157000-00
Chr11	irgsp1_rep	three_prime_UTR	2715998	2716205	.	-	.	Parent=Os11t0157000-00
Chr11	irgsp1_rep	three_prime_UTR	2715839	2715924	.	-	.	Parent=Os11t0157000-00
Chr11	irgsp1_rep	three_prime_UTR	2715672	2715742	.	-	.	Parent=Os11t0157000-00
Chr11	irgsp1_rep	three_prime_UTR	2715130	2715273	.	-	.	Parent=Os11t0157000-00
Chr11	irgsp1_rep	three_prime_UTR	2714979	2715048	.	-	.	Parent=Os11t0157000-00
Chr11	irgsp1_rep	three_prime_UTR	2714794	2714834	.	-	.	Parent=Os11t0157000-00
Chr11	irgsp1_rep	three_prime_UTR	2714613	2714687	.	-	.	Parent=Os11t0157000-00
Chr11	irgsp1_rep	three_prime_UTR	2714380	2714516	.	-	.	Parent=Os11t0157000-00
Chr11	irgsp1_rep	three_prime_UTR	2714168	2714286	.	-	.	Parent=Os11t0157000-00
Chr11	irgsp1_rep	three_prime_UTR	2714030	2714105	.	-	.	Parent=Os11t0157000-00
Chr11	irgsp1_rep	three_prime_UTR	2713834	2713916	.	-	.	Parent=Os11t0157000-00
Chr11	irgsp1_rep	three_prime_UTR	2713589	2713683	.	-	.	Parent=Os11t0157000-00
Chr11	irgsp1_rep	three_prime_UTR	2713230	2713518	.	-	.	Parent=Os11t0157000-00
Chr11	irgsp1_rep	mRNA	2730124	2736639	.	+	.	ID=Os11t0157100-01;Name=Os11t0157100-01;Locus_id=Os11g0157100;CGSNL Gene Symbol=CYCT1%3B4;CGSNL Gene Name=CYCLIN-T1-4;Oryzabase Gene Symbol Synonym(s)=CycT1%3B4%2C CycT1%3Bos%3B4%2C Orysa%3BCycT1%3B4;Oryzabase Gene Name Synonym(s)=T-type cyclin 1%3B4;Note=Similar to Cyclin T1 (Fragment).;Transcript_evidence=AK120409 (DDBJ%2C Best hit);ORF_evidence=Q2RAC5 (UniProt);GO=Biological Process: regulation of cyclin-dependent protein kinase activity (GO:0000079),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763),Cyclin C/H/T/L (IPR015429);NIAS_FLcDNA=J013091M21;Oryzabase=13278;Expression=AK120409;TENOR=Os11t0157100-01;KEGG=Os11t0157100-01
Chr11	irgsp1_rep	five_prime_UTR	2730124	2730322	.	+	.	Parent=Os11t0157100-01
Chr11	irgsp1_rep	five_prime_UTR	2732438	2732460	.	+	.	Parent=Os11t0157100-01
Chr11	irgsp1_rep	CDS	2732461	2732699	.	+	0	Parent=Os11t0157100-01
Chr11	irgsp1_rep	CDS	2733390	2733471	.	+	1	Parent=Os11t0157100-01
Chr11	irgsp1_rep	CDS	2734307	2734441	.	+	0	Parent=Os11t0157100-01
Chr11	irgsp1_rep	CDS	2734676	2734882	.	+	0	Parent=Os11t0157100-01
Chr11	irgsp1_rep	three_prime_UTR	2734883	2736639	.	+	.	Parent=Os11t0157100-01
Chr11	irgsp1_rep	mRNA	2730143	2736643	.	+	.	ID=Os11t0157100-02;Name=Os11t0157100-02;Locus_id=Os11g0157100;CGSNL Gene Symbol=CYCT1%3B4;CGSNL Gene Name=CYCLIN-T1-4;Oryzabase Gene Symbol Synonym(s)=CycT1%3B4%2C CycT1%3Bos%3B4%2C Orysa%3BCycT1%3B4;Oryzabase Gene Name Synonym(s)=T-type cyclin 1%3B4;Note=Similar to cDNA clone:J013091M21%2C full insert sequence.;Transcript_evidence=AK120416 (DDBJ%2C Best hit);ORF_evidence=B7F5V0 (UniProt);NIAS_FLcDNA=J013093B10;Oryzabase=13278;Expression=AK120416;TENOR=Os11t0157100-02;KEGG=Os11t0157100-02
Chr11	irgsp1_rep	five_prime_UTR	2730143	2733471	.	+	.	Parent=Os11t0157100-02
Chr11	irgsp1_rep	five_prime_UTR	2734307	2734441	.	+	.	Parent=Os11t0157100-02
Chr11	irgsp1_rep	five_prime_UTR	2734676	2735466	.	+	.	Parent=Os11t0157100-02
Chr11	irgsp1_rep	CDS	2735467	2736273	.	+	0	Parent=Os11t0157100-02
Chr11	irgsp1_rep	three_prime_UTR	2736274	2736643	.	+	.	Parent=Os11t0157100-02
Chr11	irgsp1_rep	mRNA	2738439	2739463	.	-	.	ID=Os11t0157200-03;Name=Os11t0157200-03;Locus_id=Os11g0157200;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK070326 (DDBJ%2C Best hit),AK104217 (DDBJ%2C Best hit),AK104372 (DDBJ%2C Best hit),AK104466 (DDBJ%2C Best hit),AK104479 (DDBJ%2C Best hit),AK106091 (DDBJ%2C Best hit),AK119781 (DDBJ%2C Best hit);ORF_evidence=NP_001151328.1 (RefSeq);NIAS_FLcDNA=J023052I16,006-306-C11,001-035-E09,006-301-C09,006-301-F10,001-207-B08,002-173-F02;Expression=AK070326;TENOR=Os11t0157200-03;KEGG=Os11t0157200-03
Chr11	irgsp1_rep	five_prime_UTR	2739291	2739463	.	-	.	Parent=Os11t0157200-03
Chr11	irgsp1_rep	CDS	2738658	2739290	.	-	0	Parent=Os11t0157200-03
Chr11	irgsp1_rep	three_prime_UTR	2738439	2738657	.	-	.	Parent=Os11t0157200-03
Chr11	irgsp1_rep	mRNA	2746379	2749770	.	-	.	ID=Os11t0157300-01;Name=Os11t0157300-01;Locus_id=Os11g0157300;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK071072 (DDBJ%2C Best hit);ORF_evidence=B9G9H4 (UniProt);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=J023077C16;Expression=AK071072;TENOR=Os11t0157300-01;KEGG=Os11t0157300-01
Chr11	irgsp1_rep	five_prime_UTR	2749741	2749770	.	-	.	Parent=Os11t0157300-01
Chr11	irgsp1_rep	CDS	2748712	2749740	.	-	0	Parent=Os11t0157300-01
Chr11	irgsp1_rep	three_prime_UTR	2748710	2748711	.	-	.	Parent=Os11t0157300-01
Chr11	irgsp1_rep	three_prime_UTR	2746379	2746732	.	-	.	Parent=Os11t0157300-01
Chr11	irgsp1_rep	mRNA	2759765	2764949	.	-	.	ID=Os11t0157400-01;Name=Os11t0157400-01;Locus_id=Os11g0157400;CGSNL Gene Symbol=EXO70A3;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A3;Oryzabase Gene Symbol Synonym(s)=OsEXO70A3%2C OsExo70A3%2C OrysaA3_Exo70;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein A3;Note=Exo70 exocyst complex subunit family protein.;Transcript_evidence=AK066482 (DDBJ%2C Best hit);ORF_evidence=NP_001147814.1 (RefSeq);GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exo70 exocyst complex subunit (IPR004140),Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=J013069O21;Oryzabase=20322;Expression=AK066482;TENOR=Os11t0157400-01;KEGG=Os11t0157400-01
Chr11	irgsp1_rep	five_prime_UTR	2764712	2764949	.	-	.	Parent=Os11t0157400-01
Chr11	irgsp1_rep	CDS	2764538	2764711	.	-	0	Parent=Os11t0157400-01
Chr11	irgsp1_rep	CDS	2764271	2764366	.	-	0	Parent=Os11t0157400-01
Chr11	irgsp1_rep	CDS	2763704	2763909	.	-	0	Parent=Os11t0157400-01
Chr11	irgsp1_rep	CDS	2763362	2763601	.	-	1	Parent=Os11t0157400-01
Chr11	irgsp1_rep	CDS	2763097	2763235	.	-	1	Parent=Os11t0157400-01
Chr11	irgsp1_rep	CDS	2762809	2763021	.	-	0	Parent=Os11t0157400-01
Chr11	irgsp1_rep	CDS	2762444	2762649	.	-	0	Parent=Os11t0157400-01
Chr11	irgsp1_rep	CDS	2761780	2761980	.	-	1	Parent=Os11t0157400-01
Chr11	irgsp1_rep	CDS	2761598	2761697	.	-	1	Parent=Os11t0157400-01
Chr11	irgsp1_rep	CDS	2760872	2760963	.	-	0	Parent=Os11t0157400-01
Chr11	irgsp1_rep	CDS	2760641	2760787	.	-	1	Parent=Os11t0157400-01
Chr11	irgsp1_rep	CDS	2760145	2760262	.	-	1	Parent=Os11t0157400-01
Chr11	irgsp1_rep	three_prime_UTR	2759765	2760144	.	-	.	Parent=Os11t0157400-01
Chr11	irgsp1_rep	mRNA	2789002	2793728	.	+	.	ID=Os11t0157600-01;Name=Os11t0157600-01;Locus_id=Os11g0157600;RAP-DB Gene Symbol Synonym(s)=OsPRR59;RAP-DB Gene Name Synonym(s)=Pseudo-Response Regulator 59;CGSNL Gene Symbol=PRR59;CGSNL Gene Name=PSEUDO-RESPONSE REGULATOR 59;Oryzabase Gene Symbol Synonym(s)=OsPRR59%2C Os-PRR59%2C Prr5%2C OsPRR5%2C OsCCT38;Oryzabase Gene Name Synonym(s)=pseudo-response regulator 5%2C CCT domain-containing gene 38%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 38%2C CCT domain protein 38;Note=Circadian-associated rice pseudo response regulator%2C Control of flowering time;Transcript_evidence=AK120059 (truncated),Inferred from literature;ORF_evidence=Q2RAB7;GO=Biological Process: phosphorelay signal transduction system (GO:0000160),Molecular Function: protein binding (GO:0005515);InterPro=CheY-like superfamily (IPR011006),Signal transduction response regulator%2C receiver domain (IPR001789),CCT domain (IPR010402);Manual Curation=September 7%2C 2017;Literature_PMID=17132630,15725670,14634161;Oryzabase=8822;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	2789002	2789006	.	+	.	Parent=Os11t0157600-01
Chr11	irgsp1_rep	CDS	2789007	2789214	.	+	0	Parent=Os11t0157600-01
Chr11	irgsp1_rep	CDS	2789363	2789524	.	+	2	Parent=Os11t0157600-01
Chr11	irgsp1_rep	CDS	2790647	2790777	.	+	2	Parent=Os11t0157600-01
Chr11	irgsp1_rep	CDS	2791062	2791175	.	+	0	Parent=Os11t0157600-01
Chr11	irgsp1_rep	CDS	2791493	2791649	.	+	0	Parent=Os11t0157600-01
Chr11	irgsp1_rep	CDS	2791767	2792190	.	+	2	Parent=Os11t0157600-01
Chr11	irgsp1_rep	CDS	2792428	2793220	.	+	1	Parent=Os11t0157600-01
Chr11	irgsp1_rep	CDS	2793372	2793482	.	+	0	Parent=Os11t0157600-01
Chr11	irgsp1_rep	three_prime_UTR	2793483	2793728	.	+	.	Parent=Os11t0157600-01
Chr11	irgsp1_rep	mRNA	2794074	2794750	.	+	.	ID=Os11t0157701-00;Name=Os11t0157701-00;Locus_id=Os11g0157701;Oryzabase Gene Name Synonym(s)=Extensin family protein;Note=Hypothetical conserved gene.;Transcript_evidence=EU972425 (DDBJ);ORF_evidence=B8BJ77 (UniProt);Oryzabase=21940;TENOR=Os11t0157701-00;KEGG=Os11t0157701-00
Chr11	irgsp1_rep	five_prime_UTR	2794074	2794157	.	+	.	Parent=Os11t0157701-00
Chr11	irgsp1_rep	CDS	2794158	2794742	.	+	0	Parent=Os11t0157701-00
Chr11	irgsp1_rep	three_prime_UTR	2794743	2794750	.	+	.	Parent=Os11t0157701-00
Chr11	irgsp1_rep	mRNA	2807614	2808358	.	-	.	ID=Os11t0158000-01;Name=Os11t0158000-01;Locus_id=Os11g0158000;Note=Conserved hypothetical protein.;Transcript_evidence=AK108705 (DDBJ%2C Best hit);ORF_evidence=B8BJ78 (UniProt);NIAS_FLcDNA=002-150-A04;Expression=AK108705;TENOR=Os11t0158000-01;KEGG=Os11t0158000-01
Chr11	irgsp1_rep	five_prime_UTR	2808307	2808358	.	-	.	Parent=Os11t0158000-01
Chr11	irgsp1_rep	CDS	2807767	2808306	.	-	0	Parent=Os11t0158000-01
Chr11	irgsp1_rep	three_prime_UTR	2807614	2807766	.	-	.	Parent=Os11t0158000-01
Chr11	irgsp1_rep	mRNA	2810903	2812169	.	+	.	ID=Os11t0158200-00;Name=Os11t0158200-00;Locus_id=Os11g0158200;Oryzabase Gene Symbol Synonym(s)=OsSTA249;Note=FAD-dependent pyridine nucleotide-disulphide oxidoreductase domain containing protein.;Transcript_evidence=BT055070 (DDBJ);ORF_evidence=NP_001065804.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Pyridine nucleotide-disulphide oxidoreductase%2C NAD-binding domain (IPR001327),FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR013027),Pyridine nucleotide-disulphide oxidoreductase%2C FAD/NAD(P)-binding domain (IPR023753);Oryzabase=19517;TENOR=Os11t0158200-00;KEGG=Os11t0158200-00
Chr11	irgsp1_rep	five_prime_UTR	2810903	2810921	.	+	.	Parent=Os11t0158200-00
Chr11	irgsp1_rep	CDS	2810922	2811028	.	+	0	Parent=Os11t0158200-00
Chr11	irgsp1_rep	CDS	2811134	2812169	.	+	1	Parent=Os11t0158200-00
Chr11	irgsp1_rep	mRNA	2814473	2817216	.	+	.	ID=Os11t0158300-01;Name=Os11t0158300-01;Locus_id=Os11g0158300;Note=Pentatricopeptide repeat containing protein.;Transcript_evidence=AK070475 (DDBJ%2C Best hit);ORF_evidence=A2ZBP3 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J023054L05;Expression=AK070475;TENOR=Os11t0158300-01;KEGG=Os11t0158300-01
Chr11	irgsp1_rep	five_prime_UTR	2814473	2814664	.	+	.	Parent=Os11t0158300-01
Chr11	irgsp1_rep	CDS	2814665	2815252	.	+	0	Parent=Os11t0158300-01
Chr11	irgsp1_rep	three_prime_UTR	2815253	2817216	.	+	.	Parent=Os11t0158300-01
Chr11	irgsp1_rep	mRNA	2814774	2818045	.	-	.	ID=Os11t0158350-00;Name=Os11t0158350-00;Locus_id=Os11g0158350;Note=Hypothetical protein.;Transcript_evidence=BT085496 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0158350-00
Chr11	irgsp1_rep	five_prime_UTR	2817789	2818045	.	-	.	Parent=Os11t0158350-00
Chr11	irgsp1_rep	CDS	2817763	2817788	.	-	0	Parent=Os11t0158350-00
Chr11	irgsp1_rep	CDS	2814774	2815208	.	-	1	Parent=Os11t0158350-00
Chr11	irgsp1_rep	mRNA	2817601	2822362	.	+	.	ID=Os11t0158400-01;Name=Os11t0158400-01;Locus_id=Os11g0158400;CGSNL Gene Symbol=DGD1D;CGSNL Gene Name=DIGALACTOSYLDIACYLGLYCEROL SYNTHASE 1 DELTA;Oryzabase Gene Symbol Synonym(s)=OsDGD1delta%2C DGD1delta%2C OsDGD1D;Oryzabase Gene Name Synonym(s)=Digalactosyldiacylglycerol synthase 1 delta%2C DGDG synthase 1 delta;Note=Similar to Digalactosyldiacylglycerol synthase 1.;Transcript_evidence=AK102797 (DDBJ%2C Best hit);ORF_evidence=Q07A01 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058);InterPro=Glycosyl transferase%2C family 1 (IPR001296);NIAS_FLcDNA=J033108D09;Oryzabase=23295;Expression=AK102797;TENOR=Os11t0158400-01;KEGG=Os11t0158400-01
Chr11	irgsp1_rep	five_prime_UTR	2817601	2817786	.	+	.	Parent=Os11t0158400-01
Chr11	irgsp1_rep	CDS	2817787	2818227	.	+	0	Parent=Os11t0158400-01
Chr11	irgsp1_rep	CDS	2819472	2819504	.	+	0	Parent=Os11t0158400-01
Chr11	irgsp1_rep	CDS	2819979	2820066	.	+	0	Parent=Os11t0158400-01
Chr11	irgsp1_rep	CDS	2820174	2820655	.	+	2	Parent=Os11t0158400-01
Chr11	irgsp1_rep	CDS	2820742	2821008	.	+	0	Parent=Os11t0158400-01
Chr11	irgsp1_rep	CDS	2821145	2821494	.	+	0	Parent=Os11t0158400-01
Chr11	irgsp1_rep	CDS	2821586	2822135	.	+	1	Parent=Os11t0158400-01
Chr11	irgsp1_rep	three_prime_UTR	2822136	2822362	.	+	.	Parent=Os11t0158400-01
Chr11	irgsp1_rep	mRNA	2835467	2837702	.	+	.	ID=Os11t0158500-01;Name=Os11t0158500-01;Locus_id=Os11g0158500;Oryzabase Gene Symbol Synonym(s)=OsbHLH151;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 151;Note=Basic helix-loop-helix dimerisation region bHLH domain containing protein.;Transcript_evidence=AK106579 (DDBJ%2C Best hit);ORF_evidence=Q2HVX8 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=002-111-C10;Oryzabase=15426;Expression=AK106579;TENOR=Os11t0158500-01;KEGG=Os11t0158500-01
Chr11	irgsp1_rep	five_prime_UTR	2835467	2835467	.	+	.	Parent=Os11t0158500-01
Chr11	irgsp1_rep	CDS	2835468	2836214	.	+	0	Parent=Os11t0158500-01
Chr11	irgsp1_rep	CDS	2836345	2836446	.	+	0	Parent=Os11t0158500-01
Chr11	irgsp1_rep	CDS	2836559	2836699	.	+	0	Parent=Os11t0158500-01
Chr11	irgsp1_rep	CDS	2836815	2836940	.	+	0	Parent=Os11t0158500-01
Chr11	irgsp1_rep	CDS	2837125	2837286	.	+	0	Parent=Os11t0158500-01
Chr11	irgsp1_rep	three_prime_UTR	2837287	2837702	.	+	.	Parent=Os11t0158500-01
Chr11	irgsp1_rep	mRNA	2838414	2841333	.	-	.	ID=Os11t0158600-00;Name=Os11t0158600-00;Locus_id=Os11g0158600;Note=Homeodomain-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001065808.2 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),POX (IPR006563),Homeobox KN domain (IPR008422),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);TENOR=Os11t0158600-00;KEGG=Os11t0158600-00
Chr11	irgsp1_rep	CDS	2840945	2841333	.	-	0	Parent=Os11t0158600-00
Chr11	irgsp1_rep	CDS	2839352	2839412	.	-	1	Parent=Os11t0158600-00
Chr11	irgsp1_rep	CDS	2838414	2839226	.	-	0	Parent=Os11t0158600-00
Chr11	irgsp1_rep	mRNA	2838490	2843299	.	+	.	ID=Os11t0158666-00;Name=Os11t0158666-00;Locus_id=Os11g0158666;Note=Hypothetical protein.;Transcript_evidence=tplb0025a22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0158666-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	2838490	2839014	.	+	.	Parent=Os11t0158666-00
Chr11	irgsp1_rep	CDS	2839015	2839223	.	+	0	Parent=Os11t0158666-00
Chr11	irgsp1_rep	CDS	2839349	2839421	.	+	1	Parent=Os11t0158666-00
Chr11	irgsp1_rep	CDS	2840953	2841330	.	+	0	Parent=Os11t0158666-00
Chr11	irgsp1_rep	CDS	2842832	2843299	.	+	0	Parent=Os11t0158666-00
Chr11	irgsp1_rep	mRNA	2842577	2844384	.	-	.	ID=Os11t0158832-00;Name=Os11t0158832-00;Locus_id=Os11g0158832;Note=Similar to Associated with HOX family protein%2C expressed.;Transcript_evidence=CU406620 (DDBJ%2C Best hit);ORF_evidence=Q2QXE2 (UniProt);InterPro=POX (IPR006563);TENOR=Os11t0158832-00;KEGG=Os11t0158832-00
Chr11	irgsp1_rep	five_prime_UTR	2844056	2844384	.	-	.	Parent=Os11t0158832-00
Chr11	irgsp1_rep	five_prime_UTR	2843609	2843702	.	-	.	Parent=Os11t0158832-00
Chr11	irgsp1_rep	CDS	2842817	2843608	.	-	0	Parent=Os11t0158832-00
Chr11	irgsp1_rep	three_prime_UTR	2842577	2842816	.	-	.	Parent=Os11t0158832-00
Chr11	irgsp1_rep	mRNA	2860827	2868949	.	-	.	ID=Os11t0159000-01;Name=Os11t0159000-01;Locus_id=Os11g0159000;Note=Phox-associated domain domain containing protein.;Transcript_evidence=AK065738 (DDBJ%2C Best hit);ORF_evidence=Q2RAA5 (UniProt);InterPro=Phox-associated domain (IPR003114);NIAS_FLcDNA=J013040H05;Expression=AK065738;TENOR=Os11t0159000-01;KEGG=Os11t0159000-01
Chr11	irgsp1_rep	five_prime_UTR	2868763	2868949	.	-	.	Parent=Os11t0159000-01
Chr11	irgsp1_rep	CDS	2868660	2868762	.	-	0	Parent=Os11t0159000-01
Chr11	irgsp1_rep	CDS	2867075	2867477	.	-	2	Parent=Os11t0159000-01
Chr11	irgsp1_rep	CDS	2866796	2866973	.	-	1	Parent=Os11t0159000-01
Chr11	irgsp1_rep	CDS	2866666	2866726	.	-	0	Parent=Os11t0159000-01
Chr11	irgsp1_rep	CDS	2863677	2863690	.	-	2	Parent=Os11t0159000-01
Chr11	irgsp1_rep	three_prime_UTR	2863538	2863676	.	-	.	Parent=Os11t0159000-01
Chr11	irgsp1_rep	three_prime_UTR	2863375	2863454	.	-	.	Parent=Os11t0159000-01
Chr11	irgsp1_rep	three_prime_UTR	2862717	2862852	.	-	.	Parent=Os11t0159000-01
Chr11	irgsp1_rep	three_prime_UTR	2862076	2862268	.	-	.	Parent=Os11t0159000-01
Chr11	irgsp1_rep	three_prime_UTR	2861517	2861599	.	-	.	Parent=Os11t0159000-01
Chr11	irgsp1_rep	three_prime_UTR	2860827	2861429	.	-	.	Parent=Os11t0159000-01
Chr11	irgsp1_rep	mRNA	2894550	2896150	.	+	.	ID=Os11t0159500-01;Name=Os11t0159500-01;Locus_id=Os11g0159500;Note=Conserved hypothetical protein.;Transcript_evidence=AK064153 (DDBJ%2C Best hit);ORF_evidence=B8BJ86 (UniProt);NIAS_FLcDNA=002-103-E08;Expression=AK064153;TENOR=Os11t0159500-01;KEGG=Os11t0159500-01
Chr11	irgsp1_rep	five_prime_UTR	2894550	2894719	.	+	.	Parent=Os11t0159500-01
Chr11	irgsp1_rep	CDS	2894720	2895767	.	+	0	Parent=Os11t0159500-01
Chr11	irgsp1_rep	CDS	2895885	2895913	.	+	2	Parent=Os11t0159500-01
Chr11	irgsp1_rep	three_prime_UTR	2895914	2896150	.	+	.	Parent=Os11t0159500-01
Chr11	irgsp1_rep	mRNA	2904929	2905975	.	+	.	ID=Os11t0159900-00;Name=Os11t0159900-00;Locus_id=Os11g0159900;Note=Protein of unknown function DUF241%2C plant domain containing protein.;Transcript_evidence=AK335638 (DDBJ);ORF_evidence=NP_001176363.1 (RefSeq);InterPro=Protein of unknown function DUF241%2C plant (IPR004320);TENOR=Os11t0159900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	2904929	2905840	.	+	0	Parent=Os11t0159900-00
Chr11	irgsp1_rep	three_prime_UTR	2905841	2905975	.	+	.	Parent=Os11t0159900-00
Chr11	irgsp1_rep	mRNA	2907576	2908803	.	+	.	ID=Os11t0160000-00;Name=Os11t0160000-00;Locus_id=Os11g0160000;Note=Protein of unknown function DUF241%2C plant domain containing protein.;Transcript_evidence=AK335638 (DDBJ);ORF_evidence=NP_001176363.1 (RefSeq);InterPro=Protein of unknown function DUF241%2C plant (IPR004320);TENOR=Os11t0160000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	2907576	2907792	.	+	.	Parent=Os11t0160000-00
Chr11	irgsp1_rep	CDS	2907793	2908662	.	+	0	Parent=Os11t0160000-00
Chr11	irgsp1_rep	three_prime_UTR	2908663	2908803	.	+	.	Parent=Os11t0160000-00
Chr11	irgsp1_rep	mRNA	2909410	2918095	.	-	.	ID=Os11t0160100-01;Name=Os11t0160100-01;Locus_id=Os11g0160100;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK065597 (DDBJ%2C Best hit);ORF_evidence=Q2RA96 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J013029P19;Expression=AK065597;TENOR=Os11t0160100-01;KEGG=Os11t0160100-01
Chr11	irgsp1_rep	five_prime_UTR	2917921	2918095	.	-	.	Parent=Os11t0160100-01
Chr11	irgsp1_rep	CDS	2917918	2917920	.	-	0	Parent=Os11t0160100-01
Chr11	irgsp1_rep	CDS	2914361	2914446	.	-	0	Parent=Os11t0160100-01
Chr11	irgsp1_rep	CDS	2911257	2912519	.	-	1	Parent=Os11t0160100-01
Chr11	irgsp1_rep	CDS	2910957	2911169	.	-	1	Parent=Os11t0160100-01
Chr11	irgsp1_rep	CDS	2910749	2910873	.	-	1	Parent=Os11t0160100-01
Chr11	irgsp1_rep	CDS	2910043	2910419	.	-	2	Parent=Os11t0160100-01
Chr11	irgsp1_rep	three_prime_UTR	2909410	2910042	.	-	.	Parent=Os11t0160100-01
Chr11	irgsp1_rep	mRNA	2925715	2929173	.	-	.	ID=Os11t0160300-01;Name=Os11t0160300-01;Locus_id=Os11g0160300;CGSNL Gene Symbol=WNK6;CGSNL Gene Name=WITH NO LYSINE KINASE 6;Oryzabase Gene Symbol Synonym(s)=OsWNK6;Oryzabase Gene Name Synonym(s)=With No Lysine kinase 6%2C WNK protein kinase 6%2C WNK kinase 6;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK070490 (DDBJ%2C Best hit);ORF_evidence=NP_001150656.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023048G14;Oryzabase=20441;Expression=AK070490;TENOR=Os11t0160300-01;KEGG=Os11t0160300-01 (EC:2.7.11.1)
Chr11	irgsp1_rep	five_prime_UTR	2928964	2929173	.	-	.	Parent=Os11t0160300-01
Chr11	irgsp1_rep	CDS	2928856	2928963	.	-	0	Parent=Os11t0160300-01
Chr11	irgsp1_rep	CDS	2928701	2928738	.	-	0	Parent=Os11t0160300-01
Chr11	irgsp1_rep	CDS	2928065	2928295	.	-	1	Parent=Os11t0160300-01
Chr11	irgsp1_rep	CDS	2927033	2927253	.	-	1	Parent=Os11t0160300-01
Chr11	irgsp1_rep	CDS	2926730	2926887	.	-	2	Parent=Os11t0160300-01
Chr11	irgsp1_rep	CDS	2926260	2926620	.	-	0	Parent=Os11t0160300-01
Chr11	irgsp1_rep	CDS	2925945	2926147	.	-	2	Parent=Os11t0160300-01
Chr11	irgsp1_rep	three_prime_UTR	2925715	2925944	.	-	.	Parent=Os11t0160300-01
Chr11	irgsp1_rep	mRNA	2932659	2933842	.	+	.	ID=Os11t0160400-01;Name=Os11t0160400-01;Locus_id=Os11g0160400;Note=Conserved hypothetical protein.;Transcript_evidence=AK109030 (DDBJ%2C Best hit);ORF_evidence=A2ZBQ7 (UniProt);NIAS_FLcDNA=002-154-B12;Expression=AK109030;TENOR=Os11t0160400-01;KEGG=Os11t0160400-01
Chr11	irgsp1_rep	five_prime_UTR	2932659	2932687	.	+	.	Parent=Os11t0160400-01
Chr11	irgsp1_rep	CDS	2932688	2933638	.	+	0	Parent=Os11t0160400-01
Chr11	irgsp1_rep	three_prime_UTR	2933639	2933842	.	+	.	Parent=Os11t0160400-01
Chr11	irgsp1_rep	mRNA	2939260	2942822	.	+	.	ID=Os11t0160500-01;Name=Os11t0160500-01;Locus_id=Os11g0160500;RAP-DB Gene Symbol Synonym(s)=OsbZIP81%2C OsbZIP81.1;RAP-DB Gene Name Synonym(s)=b-ZIP transcription factor 81;CGSNL Gene Symbol=BZIP81;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 81;Oryzabase Gene Symbol Synonym(s)=OsbZIP81%2C OsbZIP81.1%2C OsbZIP81.2;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 81;Note=Typical bZIP transcription factor%2C Homologues of the Arabidopsis VIP1%2C Positive regulation of JA levels%2C Pathogen resistance;Transcript_evidence=XM_015762292;ORF_evidence=XP_015617778;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA-binding transcription factor activity (GO:0003700);InterPro=Basic-leucine zipper domain (IPR004827);Manual Curation=May 20%2C 2019;Literature_PMID=31086007;Oryzabase=10160;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737)
Chr11	irgsp1_rep	five_prime_UTR	2939260	2939363	.	+	.	Parent=Os11t0160500-01
Chr11	irgsp1_rep	CDS	2939364	2939860	.	+	0	Parent=Os11t0160500-01
Chr11	irgsp1_rep	CDS	2940112	2940244	.	+	1	Parent=Os11t0160500-01
Chr11	irgsp1_rep	CDS	2941996	2942080	.	+	0	Parent=Os11t0160500-01
Chr11	irgsp1_rep	CDS	2942290	2942555	.	+	2	Parent=Os11t0160500-01
Chr11	irgsp1_rep	three_prime_UTR	2942556	2942822	.	+	.	Parent=Os11t0160500-01
Chr11	irgsp1_rep	mRNA	2939274	2942815	.	+	.	ID=Os11t0160500-02;Name=Os11t0160500-02;Locus_id=Os11g0160500;RAP-DB Gene Symbol Synonym(s)=OsbZIP81%2C OsbZIP81.2;RAP-DB Gene Name Synonym(s)=b-ZIP transcription factor 81;CGSNL Gene Symbol=BZIP81;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 81;Oryzabase Gene Symbol Synonym(s)=OsbZIP81%2C OsbZIP81.1%2C OsbZIP81.2;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 81;Note=Splicing variant of OsbZIP81%2C Homologues of the Arabidopsis VIP1%2C Interaction with Agrobacterium VirE2;Transcript_evidence=AK099600;ORF_evidence=B7EPB8;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA-binding transcription factor activity (GO:0003700);InterPro=Basic-leucine zipper domain (IPR004827);NIAS_FLcDNA=J013047E21;Manual Curation=May 20%2C 2019;Literature_PMID=31086007;Oryzabase=10160;Expression=AK099600;TENOR=Os11t0160500-01;KEGG=Os11t0160500-01;Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737)
Chr11	irgsp1_rep	five_prime_UTR	2939274	2939363	.	+	.	Parent=Os11t0160500-02
Chr11	irgsp1_rep	CDS	2939364	2939860	.	+	0	Parent=Os11t0160500-02
Chr11	irgsp1_rep	CDS	2940112	2940325	.	+	1	Parent=Os11t0160500-02
Chr11	irgsp1_rep	three_prime_UTR	2940326	2942080	.	+	.	Parent=Os11t0160500-02
Chr11	irgsp1_rep	three_prime_UTR	2942290	2942815	.	+	.	Parent=Os11t0160500-02
Chr11	irgsp1_rep	mRNA	2950018	2951434	.	+	.	ID=Os11t0160550-00;Name=Os11t0160550-00;Locus_id=Os11g0160550;CGSNL Gene Symbol=GRAS45;CGSNL Gene Name=GRAS PROTEIN 45;Oryzabase Gene Symbol Synonym(s)=OsGRAS-45%2C OsGRAS45%2C GRAS-45%2C DLN246%2C OsDLN246;Oryzabase Gene Name Synonym(s)=GRAS protein 45%2C DLN repressor 246%2C DLN motif protein 246;Note=Similar to GRAS family transcription factor containing protein.;Transcript_evidence=EU971578 (DDBJ);ORF_evidence=Q53PL9 (UniProt);InterPro=Transcription factor GRAS (IPR005202);Oryzabase=22812;TENOR=Os11t0160550-00;KEGG=Os11t0160550-00
Chr11	irgsp1_rep	CDS	2950018	2951403	.	+	0	Parent=Os11t0160550-00
Chr11	irgsp1_rep	three_prime_UTR	2951404	2951434	.	+	.	Parent=Os11t0160550-00
Chr11	irgsp1_rep	mRNA	2952069	2952562	.	+	.	ID=Os11t0160600-01;Name=Os11t0160600-01;Locus_id=Os11g0160600;CGSNL Gene Symbol=GRAS45;CGSNL Gene Name=GRAS PROTEIN 45;Oryzabase Gene Symbol Synonym(s)=OsGRAS-45%2C OsGRAS45%2C GRAS-45%2C DLN246%2C OsDLN246;Oryzabase Gene Name Synonym(s)=GRAS protein 45%2C DLN repressor 246%2C DLN motif protein 246;Note=Similar to GRAS family transcription factor containing protein.;Transcript_evidence=AK060460 (DDBJ%2C Best hit);ORF_evidence=Q53PL9 (UniProt);NIAS_FLcDNA=001-012-B07;Oryzabase=22812;Expression=AK060460;TENOR=Os11t0160600-01;KEGG=Os11t0160600-01
Chr11	irgsp1_rep	five_prime_UTR	2952069	2952070	.	+	.	Parent=Os11t0160600-01
Chr11	irgsp1_rep	CDS	2952071	2952223	.	+	0	Parent=Os11t0160600-01
Chr11	irgsp1_rep	three_prime_UTR	2952224	2952562	.	+	.	Parent=Os11t0160600-01
Chr11	irgsp1_rep	mRNA	2953069	2958811	.	-	.	ID=Os11t0160700-01;Name=Os11t0160700-01;Locus_id=Os11g0160700;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK099442 (DDBJ%2C Best hit);ORF_evidence=B8BJ93 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=SANT domain%2C DNA binding (IPR001005),Zinc finger%2C FYVE/PHD-type (IPR011011),Homeodomain-related (IPR012287),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J013021A06;Expression=AK099442;TENOR=Os11t0160700-01;KEGG=Os11t0160700-01
Chr11	irgsp1_rep	five_prime_UTR	2958790	2958811	.	-	.	Parent=Os11t0160700-01
Chr11	irgsp1_rep	CDS	2958699	2958789	.	-	0	Parent=Os11t0160700-01
Chr11	irgsp1_rep	CDS	2958410	2958606	.	-	2	Parent=Os11t0160700-01
Chr11	irgsp1_rep	CDS	2956712	2956822	.	-	0	Parent=Os11t0160700-01
Chr11	irgsp1_rep	CDS	2954399	2956632	.	-	0	Parent=Os11t0160700-01
Chr11	irgsp1_rep	CDS	2953625	2953697	.	-	1	Parent=Os11t0160700-01
Chr11	irgsp1_rep	CDS	2953347	2953496	.	-	0	Parent=Os11t0160700-01
Chr11	irgsp1_rep	three_prime_UTR	2953069	2953346	.	-	.	Parent=Os11t0160700-01
Chr11	irgsp1_rep	mRNA	2954818	2958807	.	-	.	ID=Os11t0160700-02;Name=Os11t0160700-02;Locus_id=Os11g0160700;Note=Hypothetical conserved gene.;Transcript_evidence=AK073141 (DDBJ%2C Best hit);ORF_evidence=B8BJ93 (UniProt);InterPro=Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J033024N08;Expression=AK073141;TENOR=Os11t0160700-02;KEGG=Os11t0160700-02
Chr11	irgsp1_rep	five_prime_UTR	2958790	2958807	.	-	.	Parent=Os11t0160700-02
Chr11	irgsp1_rep	CDS	2958699	2958789	.	-	0	Parent=Os11t0160700-02
Chr11	irgsp1_rep	CDS	2958410	2958606	.	-	2	Parent=Os11t0160700-02
Chr11	irgsp1_rep	CDS	2956712	2956822	.	-	0	Parent=Os11t0160700-02
Chr11	irgsp1_rep	CDS	2954818	2956632	.	-	0	Parent=Os11t0160700-02
Chr11	irgsp1_rep	mRNA	2966154	2967902	.	-	.	ID=Os11t0160850-01;Name=Os11t0160850-01;Locus_id=Os11g0160850;Note=Non-protein coding transcript.;Transcript_evidence=AK243357 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J100061D22;TENOR=Os11t0160850-01
Chr11	irgsp1_rep	exon	2966154	2967902	.	-	.	Parent=Os11t0160850-01
Chr11	irgsp1_rep	mRNA	2966226	2967707	.	+	.	ID=Os11t0160900-00;Name=Os11t0160900-00;Locus_id=Os11g0160900;Note=NB-ARC domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001176365.1 (RefSeq);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os11t0160900-00;KEGG=Os11t0160900-00
Chr11	irgsp1_rep	CDS	2966226	2967707	.	+	0	Parent=Os11t0160900-00
Chr11	irgsp1_rep	mRNA	2971164	2974308	.	+	.	ID=Os11t0161000-01;Name=Os11t0161000-01;Locus_id=Os11g0161000;Note=NB-ARC domain containing protein.;Transcript_evidence=AK065519 (DDBJ%2C Best hit);ORF_evidence=Q53PM2 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);NIAS_FLcDNA=J013029E19;TENOR=Os11t0161000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	2971164	2972381	.	+	.	Parent=Os11t0161000-01
Chr11	irgsp1_rep	CDS	2972382	2974058	.	+	0	Parent=Os11t0161000-01
Chr11	irgsp1_rep	three_prime_UTR	2974059	2974308	.	+	.	Parent=Os11t0161000-01
Chr11	irgsp1_rep	mRNA	2978444	2981470	.	+	.	ID=Os11t0161100-01;Name=Os11t0161100-01;Locus_id=Os11g0161100;Note=NB-ARC domain containing protein.;Transcript_evidence=AK064948 (DDBJ%2C Best hit);ORF_evidence=NP_001065821.1 (RefSeq);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);NIAS_FLcDNA=J013000P18;Expression=AK064948;TENOR=Os11t0161100-01;KEGG=Os11t0161100-01
Chr11	irgsp1_rep	five_prime_UTR	2978444	2978589	.	+	.	Parent=Os11t0161100-01
Chr11	irgsp1_rep	CDS	2978590	2978720	.	+	0	Parent=Os11t0161100-01
Chr11	irgsp1_rep	CDS	2979668	2981156	.	+	1	Parent=Os11t0161100-01
Chr11	irgsp1_rep	three_prime_UTR	2981157	2981470	.	+	.	Parent=Os11t0161100-01
Chr11	irgsp1_rep	mRNA	2983193	2984650	.	+	.	ID=Os11t0161133-00;Name=Os11t0161133-00;Locus_id=Os11g0161133;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=BT014681 (DDBJ%2C Secondary hit);ORF_evidence=Q53PM2 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);Expression=BT014681;TENOR=Os11t0161133-00;KEGG=Os11t0161133-00
Chr11	irgsp1_rep	CDS	2983193	2984650	.	+	0	Parent=Os11t0161133-00
Chr11	irgsp1_rep	mRNA	2984173	2986877	.	-	.	ID=Os11t0161166-01;Name=Os11t0161166-01;Locus_id=Os11g0161166;Note=Hypothetical gene.;Transcript_evidence=AK288210 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090009J03;TENOR=Os11t0161166-01;KEGG=Os11t0161166-01
Chr11	irgsp1_rep	five_prime_UTR	2986689	2986877	.	-	.	Parent=Os11t0161166-01
Chr11	irgsp1_rep	CDS	2986425	2986688	.	-	0	Parent=Os11t0161166-01
Chr11	irgsp1_rep	three_prime_UTR	2984173	2986424	.	-	.	Parent=Os11t0161166-01
Chr11	irgsp1_rep	mRNA	2987096	2987410	.	-	.	ID=Os11t0161200-00;Name=Os11t0161200-00;Locus_id=Os11g0161200;Note=Similar to ATOZI1.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001151357.1 (RefSeq);InterPro=Protein of unknown function DUF1138 (IPR009515);TENOR=Os11t0161200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	2987317	2987410	.	-	0	Parent=Os11t0161200-00
Chr11	irgsp1_rep	CDS	2987096	2987238	.	-	2	Parent=Os11t0161200-00
Chr11	irgsp1_rep	mRNA	3019562	3022357	.	+	.	ID=Os11t0161700-01;Name=Os11t0161700-01;Locus_id=Os11g0161700;Note=Conserved hypothetical protein.;Transcript_evidence=AK241613 (DDBJ%2C Best hit);ORF_evidence=Q53PN4 (UniProt);NIAS_FLcDNA=J065186C13;TENOR=Os11t0161700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	3019562	3019780	.	+	.	Parent=Os11t0161700-01
Chr11	irgsp1_rep	CDS	3019781	3019846	.	+	0	Parent=Os11t0161700-01
Chr11	irgsp1_rep	CDS	3020670	3020837	.	+	0	Parent=Os11t0161700-01
Chr11	irgsp1_rep	three_prime_UTR	3020838	3022357	.	+	.	Parent=Os11t0161700-01
Chr11	irgsp1_rep	mRNA	3023705	3025129	.	+	.	ID=Os11t0161800-00;Name=Os11t0161800-00;Locus_id=Os11g0161800;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q53PN3 (UniProt);TENOR=Os11t0161800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	3023705	3025129	.	+	0	Parent=Os11t0161800-00
Chr11	irgsp1_rep	mRNA	3026703	3027395	.	+	.	ID=Os11t0161900-00;Name=Os11t0161900-00;Locus_id=Os11g0161900;Note=Similar to Integral membrane protein.;Transcript_evidence=EU972780 (DDBJ);ORF_evidence=Q53PN2 (UniProt);InterPro=Domain of unknown function DUF125%2C transmembrane (IPR008217);TENOR=Os11t0161900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	3026703	3026740	.	+	.	Parent=Os11t0161900-00
Chr11	irgsp1_rep	CDS	3026741	3027364	.	+	0	Parent=Os11t0161900-00
Chr11	irgsp1_rep	three_prime_UTR	3027365	3027395	.	+	.	Parent=Os11t0161900-00
Chr11	irgsp1_rep	mRNA	3027714	3031891	.	-	.	ID=Os11t0162000-01;Name=Os11t0162000-01;Locus_id=Os11g0162000;Note=Autophagy-related protein 13 domain containing protein.;Transcript_evidence=AK069028 (DDBJ%2C Best hit);ORF_evidence=B8BJA0 (UniProt);InterPro=Autophagy-related protein 13 (IPR018731);NIAS_FLcDNA=J023002N21;TENOR=Os11t0162000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	3031588	3031891	.	-	.	Parent=Os11t0162000-01
Chr11	irgsp1_rep	CDS	3031435	3031587	.	-	0	Parent=Os11t0162000-01
Chr11	irgsp1_rep	CDS	3029996	3031306	.	-	0	Parent=Os11t0162000-01
Chr11	irgsp1_rep	CDS	3029701	3029852	.	-	0	Parent=Os11t0162000-01
Chr11	irgsp1_rep	CDS	3028000	3028354	.	-	1	Parent=Os11t0162000-01
Chr11	irgsp1_rep	three_prime_UTR	3027714	3027999	.	-	.	Parent=Os11t0162000-01
Chr11	irgsp1_rep	mRNA	3037498	3040016	.	+	.	ID=Os11t0162200-01;Name=Os11t0162200-01;Locus_id=Os11g0162200;Note=Similar to Ubiquinol-cytoChrome c reductase complex 7.8 kDa protein (EC 1.10.2.2) (Mitochondrial hinge protein) (CR7).;Transcript_evidence=AK060396 (DDBJ%2C Best hit);ORF_evidence=B6TLS6 (UniProt);GO=Biological Process: mitochondrial electron transport%2C ubiquinol to cytoChrome c (GO:0006122),Molecular Function: ubiquinol-cytoChrome-c reductase activity (GO:0008121);InterPro=CytoChrome b-c1 complex%2C subunit 6 (IPR003422),Ubiquinol-cytoChrome C reductase hinge domain (IPR023184);NIAS_FLcDNA=001-010-B03;Expression=AK060396;TENOR=Os11t0162200-01;KEGG=Os11t0162200-01 (EC:1.10.2.2)
Chr11	irgsp1_rep	five_prime_UTR	3037498	3037609	.	+	.	Parent=Os11t0162200-01
Chr11	irgsp1_rep	CDS	3037610	3037611	.	+	0	Parent=Os11t0162200-01
Chr11	irgsp1_rep	CDS	3038711	3038795	.	+	1	Parent=Os11t0162200-01
Chr11	irgsp1_rep	CDS	3039612	3039701	.	+	0	Parent=Os11t0162200-01
Chr11	irgsp1_rep	CDS	3039822	3039854	.	+	0	Parent=Os11t0162200-01
Chr11	irgsp1_rep	three_prime_UTR	3039855	3040016	.	+	.	Parent=Os11t0162200-01
Chr11	irgsp1_rep	mRNA	3060738	3062680	.	-	.	ID=Os11t0162700-01;Name=Os11t0162700-01;Locus_id=Os11g0162700;Note=Hypothetical conserved gene.;Transcript_evidence=AK073178 (DDBJ%2C Best hit);ORF_evidence=B8B097 (UniProt);NIAS_FLcDNA=J033011M22;Expression=AK073178;TENOR=Os11t0162700-01;KEGG=Os11t0162700-01
Chr11	irgsp1_rep	five_prime_UTR	3062679	3062680	.	-	.	Parent=Os11t0162700-01
Chr11	irgsp1_rep	CDS	3062070	3062678	.	-	0	Parent=Os11t0162700-01
Chr11	irgsp1_rep	three_prime_UTR	3061081	3062069	.	-	.	Parent=Os11t0162700-01
Chr11	irgsp1_rep	three_prime_UTR	3060738	3060984	.	-	.	Parent=Os11t0162700-01
Chr11	irgsp1_rep	mRNA	3058267	3062677	.	-	.	ID=Os11t0162700-02;Name=Os11t0162700-02;Locus_id=Os11g0162700;Note=Hypothetical conserved gene.;Transcript_evidence=AK119419 (DDBJ%2C Best hit);ORF_evidence=B8B097 (UniProt);NIAS_FLcDNA=001-132-G10;Expression=AK119419;TENOR=Os11t0162700-02;KEGG=Os11t0162700-02
Chr11	irgsp1_rep	five_prime_UTR	3062676	3062677	.	-	.	Parent=Os11t0162700-02
Chr11	irgsp1_rep	CDS	3062070	3062675	.	-	0	Parent=Os11t0162700-02
Chr11	irgsp1_rep	three_prime_UTR	3061081	3062069	.	-	.	Parent=Os11t0162700-02
Chr11	irgsp1_rep	three_prime_UTR	3060368	3060984	.	-	.	Parent=Os11t0162700-02
Chr11	irgsp1_rep	three_prime_UTR	3059781	3059935	.	-	.	Parent=Os11t0162700-02
Chr11	irgsp1_rep	three_prime_UTR	3058659	3058877	.	-	.	Parent=Os11t0162700-02
Chr11	irgsp1_rep	three_prime_UTR	3058267	3058471	.	-	.	Parent=Os11t0162700-02
Chr11	irgsp1_rep	mRNA	3063525	3066036	.	-	.	ID=Os11t0162900-01;Name=Os11t0162900-01;Locus_id=Os11g0162900;Note=Conserved hypothetical protein.;Transcript_evidence=AK107274 (DDBJ%2C Best hit);ORF_evidence=A2ZBT9 (UniProt);NIAS_FLcDNA=002-126-A03;Expression=AK107274;TENOR=Os11t0162900-01;KEGG=Os11t0162900-01
Chr11	irgsp1_rep	five_prime_UTR	3065876	3066036	.	-	.	Parent=Os11t0162900-01
Chr11	irgsp1_rep	CDS	3064884	3065875	.	-	0	Parent=Os11t0162900-01
Chr11	irgsp1_rep	CDS	3063864	3063885	.	-	1	Parent=Os11t0162900-01
Chr11	irgsp1_rep	three_prime_UTR	3063525	3063863	.	-	.	Parent=Os11t0162900-01
Chr11	irgsp1_rep	mRNA	3078917	3081342	.	+	.	ID=Os11t0163100-01;Name=Os11t0163100-01;Locus_id=Os11g0163100;Oryzabase Gene Name Synonym(s)=Actin;Note=Similar to Actin 7 (Actin 2).;Transcript_evidence=AK071450 (DDBJ%2C Best hit),AK060893 (DDBJ%2C Best hit);ORF_evidence=Q9FUS4 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Actin-like (IPR004000),Actin%2C conserved site (IPR004001),Actin/actin-like conserved site (IPR020902);NIAS_FLcDNA=J023098M18,001-035-C05;Oryzabase=17716;TENOR=Os11t0163100-01
Chr11	irgsp1_rep	five_prime_UTR	3078917	3079037	.	+	.	Parent=Os11t0163100-01
Chr11	irgsp1_rep	five_prime_UTR	3079554	3079576	.	+	.	Parent=Os11t0163100-01
Chr11	irgsp1_rep	CDS	3079577	3079636	.	+	0	Parent=Os11t0163100-01
Chr11	irgsp1_rep	CDS	3079734	3080127	.	+	0	Parent=Os11t0163100-01
Chr11	irgsp1_rep	CDS	3080202	3080815	.	+	2	Parent=Os11t0163100-01
Chr11	irgsp1_rep	CDS	3080906	3080971	.	+	0	Parent=Os11t0163100-01
Chr11	irgsp1_rep	three_prime_UTR	3080972	3081342	.	+	.	Parent=Os11t0163100-01
Chr11	irgsp1_rep	mRNA	3091820	3096321	.	+	.	ID=Os11t0163500-01;Name=Os11t0163500-01;Locus_id=Os11g0163500;RAP-DB Gene Symbol Synonym(s)=OsGT&gamma%3B-2%2C OsGTgamma-2;RAP-DB Gene Name Synonym(s)=GT factor gamma-2;CGSNL Gene Symbol=MSL37;CGSNL Gene Name=MYB/SANT-LIKE 37;Oryzabase Gene Symbol Synonym(s)=OsMSL37%2C DLN247%2C OsDLN247%2C OsGTgamma-2%2C GTgamma-2;Oryzabase Gene Name Synonym(s)=Myb/SANT-LIKE 37%2C DLN repressor 247%2C DLN motif protein 247%2C GT factor gamma-2;Note=Trihelix transcription factor%2C Positive regulation of responses to salt stress%2C Salinity adaptation;Transcript_evidence=AK101154;ORF_evidence=Q53PP7;NIAS_FLcDNA=J033027D16;Manual Curation=June 9%2C 2020;Literature_PMID=32504260;Oryzabase=22968;Expression=AK101154;TENOR=Os11t0163500-01;KEGG=Os11t0163500-01;Subcellular location=nucleus (GO:0005634)
Chr11	irgsp1_rep	five_prime_UTR	3091820	3092635	.	+	.	Parent=Os11t0163500-01
Chr11	irgsp1_rep	CDS	3092636	3092688	.	+	0	Parent=Os11t0163500-01
Chr11	irgsp1_rep	CDS	3093499	3094897	.	+	1	Parent=Os11t0163500-01
Chr11	irgsp1_rep	three_prime_UTR	3094898	3094931	.	+	.	Parent=Os11t0163500-01
Chr11	irgsp1_rep	three_prime_UTR	3096042	3096321	.	+	.	Parent=Os11t0163500-01
Chr11	irgsp1_rep	mRNA	3093502	3094933	.	-	.	ID=Os11t0163575-00;Name=Os11t0163575-00;Locus_id=Os11g0163575;Note=Non-protein coding transcript.;Transcript_evidence=tplb0036a14 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os11t0163575-00
Chr11	irgsp1_rep	exon	3093502	3094933	.	-	.	Parent=Os11t0163575-00
Chr11	irgsp1_rep	mRNA	3098464	3102645	.	+	.	ID=Os11t0163600-01;Name=Os11t0163600-01;Locus_id=Os11g0163600;Oryzabase Gene Symbol Synonym(s)=OsTLP6%2C OsTLP13%2C OsFbox569%2C Os_F0461;Oryzabase Gene Name Synonym(s)=tubby-like protein 6%2C tubby-like protein 13%2C F-box protein 569;Note=Similar to Tubby-like F-box protein 13.;Transcript_evidence=AK070139 (DDBJ%2C Best hit);ORF_evidence=Q53PP5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023042K06;Oryzabase=14708;TENOR=Os11t0163600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	3098464	3098760	.	+	.	Parent=Os11t0163600-01
Chr11	irgsp1_rep	five_prime_UTR	3099069	3099201	.	+	.	Parent=Os11t0163600-01
Chr11	irgsp1_rep	CDS	3099202	3099543	.	+	0	Parent=Os11t0163600-01
Chr11	irgsp1_rep	CDS	3099741	3099830	.	+	0	Parent=Os11t0163600-01
Chr11	irgsp1_rep	CDS	3101338	3101412	.	+	0	Parent=Os11t0163600-01
Chr11	irgsp1_rep	three_prime_UTR	3101413	3101470	.	+	.	Parent=Os11t0163600-01
Chr11	irgsp1_rep	three_prime_UTR	3101569	3102645	.	+	.	Parent=Os11t0163600-01
Chr11	irgsp1_rep	mRNA	3110576	3112429	.	+	.	ID=Os11t0163800-01;Name=Os11t0163800-01;Locus_id=Os11g0163800;Note=Protein of unknown function DUF793 family protein.;Transcript_evidence=AK105532 (DDBJ%2C Best hit);ORF_evidence=B8BJ95 (UniProt);InterPro=Protein BYPASS-related (IPR008511);NIAS_FLcDNA=001-127-G11;Expression=AK105532;TENOR=Os11t0163800-01;KEGG=Os11t0163800-01
Chr11	irgsp1_rep	five_prime_UTR	3110576	3110677	.	+	.	Parent=Os11t0163800-01
Chr11	irgsp1_rep	CDS	3110678	3111937	.	+	0	Parent=Os11t0163800-01
Chr11	irgsp1_rep	three_prime_UTR	3111938	3112429	.	+	.	Parent=Os11t0163800-01
Chr11	irgsp1_rep	mRNA	3127493	3128785	.	+	.	ID=Os11t0164100-00;Name=Os11t0164100-00;Locus_id=Os11g0164100;Note=Conserved hypothetical protein.;Transcript_evidence=BT086783 (DDBJ);ORF_evidence=NP_001065835.2 (RefSeq);TENOR=Os11t0164100-00
Chr11	irgsp1_rep	CDS	3127493	3127669	.	+	0	Parent=Os11t0164100-00
Chr11	irgsp1_rep	CDS	3128572	3128682	.	+	0	Parent=Os11t0164100-00
Chr11	irgsp1_rep	three_prime_UTR	3128683	3128785	.	+	.	Parent=Os11t0164100-00
Chr11	irgsp1_rep	mRNA	3131935	3136630	.	-	.	ID=Os11t0164200-00;Name=Os11t0164200-00;Locus_id=Os11g0164200;Note=Similar to Ribosome inactivating protein.;Transcript_evidence=AK367402 (DDBJ);ORF_evidence=Q53PQ6 (UniProt);GO=Biological Process: negative regulation of translation (GO:0017148),Molecular Function: rRNA N-glycosylase activity (GO:0030598);InterPro=Ribosome-inactivating protein (IPR001574),Ribosome-inactivating protein%2C subdomain 1 (IPR016138);TENOR=Os11t0164200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	3135761	3136630	.	-	0	Parent=Os11t0164200-00
Chr11	irgsp1_rep	CDS	3135600	3135698	.	-	0	Parent=Os11t0164200-00
Chr11	irgsp1_rep	three_prime_UTR	3135417	3135599	.	-	.	Parent=Os11t0164200-00
Chr11	irgsp1_rep	three_prime_UTR	3131935	3132440	.	-	.	Parent=Os11t0164200-00
Chr11	irgsp1_rep	mRNA	3152475	3154921	.	-	.	ID=Os11t0164900-00;Name=Os11t0164900-00;Locus_id=Os11g0164900;Note=Conserved hypothetical protein.;Transcript_evidence=CT835697 (DDBJ%2C Best hit);ORF_evidence=Q53PQ9 (UniProt);TENOR=Os11t0164900-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	3154644	3154921	.	-	.	Parent=Os11t0164900-00
Chr11	irgsp1_rep	CDS	3154613	3154643	.	-	0	Parent=Os11t0164900-00
Chr11	irgsp1_rep	CDS	3152653	3152765	.	-	2	Parent=Os11t0164900-00
Chr11	irgsp1_rep	three_prime_UTR	3152475	3152652	.	-	.	Parent=Os11t0164900-00
Chr11	irgsp1_rep	mRNA	3173825	3175505	.	+	.	ID=Os11t0165700-00;Name=Os11t0165700-00;Locus_id=Os11g0165700;Note=Mannose-binding lectin domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q53KV8 (UniProt);InterPro=Mannose-binding lectin (IPR001229);TENOR=Os11t0165700-00;KEGG=Os11t0165700-00
Chr11	irgsp1_rep	CDS	3173825	3174106	.	+	0	Parent=Os11t0165700-00
Chr11	irgsp1_rep	CDS	3175245	3175505	.	+	0	Parent=Os11t0165700-00
Chr11	irgsp1_rep	mRNA	3178940	3181626	.	+	.	ID=Os11t0166100-01;Name=Os11t0166100-01;Locus_id=Os11g0166100;Oryzabase Gene Symbol Synonym(s)=OsFbox570%2C Os_F0219;Oryzabase Gene Name Synonym(s)=F-box protein 570;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK240944 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J065042I04;Oryzabase=17338;TENOR=Os11t0166100-01;KEGG=Os11t0166100-01
Chr11	irgsp1_rep	five_prime_UTR	3178940	3179044	.	+	.	Parent=Os11t0166100-01
Chr11	irgsp1_rep	CDS	3179045	3180154	.	+	0	Parent=Os11t0166100-01
Chr11	irgsp1_rep	three_prime_UTR	3180155	3180162	.	+	.	Parent=Os11t0166100-01
Chr11	irgsp1_rep	three_prime_UTR	3181278	3181626	.	+	.	Parent=Os11t0166100-01
Chr11	irgsp1_rep	mRNA	3183224	3183778	.	-	.	ID=Os11t0166201-00;Name=Os11t0166201-00;Locus_id=Os11g0166201;Note=Similar to BZIP transcription factor family protein%2C expressed.;Transcript_evidence=AK359622 (DDBJ);ORF_evidence=Q53QH0 (UniProt);TENOR=Os11t0166201-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	3183741	3183778	.	-	.	Parent=Os11t0166201-00
Chr11	irgsp1_rep	CDS	3183558	3183740	.	-	0	Parent=Os11t0166201-00
Chr11	irgsp1_rep	CDS	3183401	3183457	.	-	0	Parent=Os11t0166201-00
Chr11	irgsp1_rep	three_prime_UTR	3183224	3183400	.	-	.	Parent=Os11t0166201-00
Chr11	irgsp1_rep	mRNA	3184544	3185112	.	+	.	ID=Os11t0166450-00;Name=Os11t0166450-00;Locus_id=Os11g0166450;Note=Hypothetical conserved gene.;Transcript_evidence=CT835659 (DDBJ%2C Best hit);ORF_evidence=B8BJ84 (UniProt);TENOR=Os11t0166450-00;KEGG=Os11t0166450-00
Chr11	irgsp1_rep	five_prime_UTR	3184544	3184654	.	+	.	Parent=Os11t0166450-00
Chr11	irgsp1_rep	CDS	3184655	3185014	.	+	0	Parent=Os11t0166450-00
Chr11	irgsp1_rep	three_prime_UTR	3185015	3185112	.	+	.	Parent=Os11t0166450-00
Chr11	irgsp1_rep	mRNA	3233723	3236100	.	-	.	ID=Os11t0166800-01;Name=Os11t0166800-01;Locus_id=Os11g0166800;Oryzabase Gene Symbol Synonym(s)=OsMed26_2%2C Med26_2;Oryzabase Gene Name Synonym(s)=Mediator 26_2;Note=Transcription elongation factor%2C TFIIS/CRSP70%2C N-terminal domain containing protein.;Transcript_evidence=AK070928 (DDBJ%2C Best hit);ORF_evidence=Q53PV2 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Transcription factor IIS%2C N-terminal (IPR017923);NIAS_FLcDNA=J023074B05;Oryzabase=20983;Expression=AK070928;TENOR=Os11t0166800-01;KEGG=Os11t0166800-01
Chr11	irgsp1_rep	five_prime_UTR	3236099	3236100	.	-	.	Parent=Os11t0166800-01
Chr11	irgsp1_rep	CDS	3236057	3236098	.	-	0	Parent=Os11t0166800-01
Chr11	irgsp1_rep	CDS	3235888	3235956	.	-	0	Parent=Os11t0166800-01
Chr11	irgsp1_rep	CDS	3235682	3235764	.	-	0	Parent=Os11t0166800-01
Chr11	irgsp1_rep	CDS	3235490	3235563	.	-	1	Parent=Os11t0166800-01
Chr11	irgsp1_rep	CDS	3235314	3235366	.	-	2	Parent=Os11t0166800-01
Chr11	irgsp1_rep	CDS	3234910	3234949	.	-	0	Parent=Os11t0166800-01
Chr11	irgsp1_rep	CDS	3234655	3234797	.	-	2	Parent=Os11t0166800-01
Chr11	irgsp1_rep	CDS	3234207	3234303	.	-	0	Parent=Os11t0166800-01
Chr11	irgsp1_rep	CDS	3233921	3234036	.	-	2	Parent=Os11t0166800-01
Chr11	irgsp1_rep	three_prime_UTR	3233723	3233920	.	-	.	Parent=Os11t0166800-01
Chr11	irgsp1_rep	mRNA	3233921	3234789	.	+	.	ID=Os11t0166866-00;Name=Os11t0166866-00;Locus_id=Os11g0166866;Note=Non-protein coding transcript.;Transcript_evidence=BT065504 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0166866-00
Chr11	irgsp1_rep	exon	3233921	3234027	.	+	.	Parent=Os11t0166866-00
Chr11	irgsp1_rep	exon	3234198	3234287	.	+	.	Parent=Os11t0166866-00
Chr11	irgsp1_rep	exon	3234637	3234789	.	+	.	Parent=Os11t0166866-00
Chr11	irgsp1_rep	mRNA	3236952	3237012	.	+	.	ID=Os11t0166932-00;Name=Os11t0166932-00;Locus_id=Os11g0166932;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0166932-00
Chr11	irgsp1_rep	exon	3236952	3237012	.	+	.	Parent=Os11t0166932-00
Chr11	irgsp1_rep	mRNA	3246521	3249930	.	+	.	ID=Os11t0167200-01;Name=Os11t0167200-01;Locus_id=Os11g0167200;Note=Similar to predicted protein.;Transcript_evidence=AK241490 (DDBJ%2C Best hit);ORF_evidence=B8BJA6 (UniProt);NIAS_FLcDNA=J065166P19;TENOR=Os11t0167200-01;KEGG=Os11t0167200-01
Chr11	irgsp1_rep	five_prime_UTR	3246521	3246539	.	+	.	Parent=Os11t0167200-01
Chr11	irgsp1_rep	CDS	3246540	3246793	.	+	0	Parent=Os11t0167200-01
Chr11	irgsp1_rep	CDS	3246921	3247019	.	+	1	Parent=Os11t0167200-01
Chr11	irgsp1_rep	CDS	3247611	3247770	.	+	1	Parent=Os11t0167200-01
Chr11	irgsp1_rep	CDS	3247857	3248036	.	+	0	Parent=Os11t0167200-01
Chr11	irgsp1_rep	CDS	3248126	3248260	.	+	0	Parent=Os11t0167200-01
Chr11	irgsp1_rep	CDS	3248863	3248945	.	+	0	Parent=Os11t0167200-01
Chr11	irgsp1_rep	CDS	3249043	3249136	.	+	1	Parent=Os11t0167200-01
Chr11	irgsp1_rep	CDS	3249250	3249336	.	+	0	Parent=Os11t0167200-01
Chr11	irgsp1_rep	three_prime_UTR	3249337	3249930	.	+	.	Parent=Os11t0167200-01
Chr11	irgsp1_rep	mRNA	3250271	3254509	.	-	.	ID=Os11t0167300-01;Name=Os11t0167300-01;Locus_id=Os11g0167300;Note=Protein of unknown function DUF537 family protein.;Transcript_evidence=AK101314 (DDBJ%2C Best hit);ORF_evidence=B9G9K9 (UniProt);InterPro=Domain of unknown function DUF88 (IPR021139);NIAS_FLcDNA=J033034B16;Expression=AK101314;TENOR=Os11t0167300-01;KEGG=Os11t0167300-01
Chr11	irgsp1_rep	five_prime_UTR	3254436	3254509	.	-	.	Parent=Os11t0167300-01
Chr11	irgsp1_rep	CDS	3254054	3254435	.	-	0	Parent=Os11t0167300-01
Chr11	irgsp1_rep	CDS	3251866	3253486	.	-	2	Parent=Os11t0167300-01
Chr11	irgsp1_rep	CDS	3250537	3251311	.	-	1	Parent=Os11t0167300-01
Chr11	irgsp1_rep	three_prime_UTR	3250271	3250536	.	-	.	Parent=Os11t0167300-01
Chr11	irgsp1_rep	mRNA	3250276	3254508	.	-	.	ID=Os11t0167300-02;Name=Os11t0167300-02;Locus_id=Os11g0167300;Note=Protein of unknown function DUF537 family protein.;Transcript_evidence=AK071335 (DDBJ%2C Best hit);ORF_evidence=B9G9K9 (UniProt);InterPro=Domain of unknown function DUF88 (IPR021139);NIAS_FLcDNA=J023090O08;Expression=AK071335;TENOR=Os11t0167300-02;KEGG=Os11t0167300-02
Chr11	irgsp1_rep	five_prime_UTR	3254436	3254508	.	-	.	Parent=Os11t0167300-02
Chr11	irgsp1_rep	CDS	3254054	3254435	.	-	0	Parent=Os11t0167300-02
Chr11	irgsp1_rep	CDS	3251866	3253486	.	-	2	Parent=Os11t0167300-02
Chr11	irgsp1_rep	CDS	3250537	3251311	.	-	1	Parent=Os11t0167300-02
Chr11	irgsp1_rep	three_prime_UTR	3250531	3250536	.	-	.	Parent=Os11t0167300-02
Chr11	irgsp1_rep	three_prime_UTR	3250276	3250436	.	-	.	Parent=Os11t0167300-02
Chr11	irgsp1_rep	mRNA	3255338	3256213	.	+	.	ID=Os11t0167400-00;Name=Os11t0167400-00;Locus_id=Os11g0167400;Note=Conserved hypothetical protein.;Transcript_evidence=AK369551 (DDBJ);ORF_evidence=NP_001042235.1 (RefSeq);TENOR=Os11t0167400-00
Chr11	irgsp1_rep	CDS	3255338	3256213	.	+	0	Parent=Os11t0167400-00
Chr11	irgsp1_rep	mRNA	3259535	3260938	.	+	.	ID=Os11t0167500-00;Name=Os11t0167500-00;Locus_id=Os11g0167500;Oryzabase Gene Symbol Synonym(s)=OsSTA250;Note=Similar to Serine esterase family protein%2C expressed.;Transcript_evidence=BT083721 (DDBJ);ORF_evidence=NP_564732.1 (RefSeq);InterPro=Domain of unknown function DUF676%2C lipase-like (IPR007751);Oryzabase=19518;TENOR=Os11t0167500-00;KEGG=Os11t0167500-00
Chr11	irgsp1_rep	five_prime_UTR	3259535	3259634	.	+	.	Parent=Os11t0167500-00
Chr11	irgsp1_rep	CDS	3259635	3259724	.	+	0	Parent=Os11t0167500-00
Chr11	irgsp1_rep	CDS	3259815	3260073	.	+	0	Parent=Os11t0167500-00
Chr11	irgsp1_rep	CDS	3260151	3260356	.	+	2	Parent=Os11t0167500-00
Chr11	irgsp1_rep	CDS	3260497	3260547	.	+	0	Parent=Os11t0167500-00
Chr11	irgsp1_rep	CDS	3260642	3260938	.	+	0	Parent=Os11t0167500-00
Chr11	irgsp1_rep	mRNA	3266129	3268207	.	+	.	ID=Os11t0167600-00;Name=Os11t0167600-00;Locus_id=Os11g0167600;CGSNL Gene Symbol=EXO70C2;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN C2;Oryzabase Gene Symbol Synonym(s)=OsEXO70C2%2C OsExo70C2%2C OrysaC2_Exo70;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein C2;Note=Similar to Exo70 exocyst complex subunit family protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QX89 (UniProt);GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exo70 exocyst complex subunit (IPR004140),Cullin repeat-like-containing domain (IPR016159);Oryzabase=20366;TENOR=Os11t0167600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	3266129	3268207	.	+	0	Parent=Os11t0167600-00
Chr11	irgsp1_rep	mRNA	3278451	3279419	.	-	.	ID=Os11t0167800-01;Name=Os11t0167800-01;Locus_id=Os11g0167800;RAP-DB Gene Symbol Synonym(s)=OsASR5;RAP-DB Gene Name Synonym(s)="abscisic acid%2C stress and ripening 5";CGSNL Gene Symbol=ASR5;CGSNL Gene Name=ABSCISIC ACID-STRESS-RIPENING-INDUCIBLE 5 PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsASR5%2C Asr5%2C Asr1%2C OsASR1%2C OsASR2%2C ASR2;Oryzabase Gene Name Synonym(s)=Abiotic Stress Responsive 1%2C "ABA-%2C stress and ripening-induced protein 5"%2C "abscisic acid-%2C stress- and ripening (ASR) gene 5"%2C "abscisic acid%2C stress and ripening 2";Note="Abscisic acid-%2C stress-%2C and ripening-induced (ASR) protein"%2C Chaperone-like protein%2C ABA-mediated regulation of stomatal closure%2C Drought tolerance%2C Aluminum tolerance;Transcript_evidence=AK119547,AK064892,AK104677,AK119208;ORF_evidence=Q53JF7;InterPro=ABA/WDS induced protein (IPR003496);NIAS_FLcDNA=001-207-A11,J013000K20,001-035-D06,001-041-E02;Manual Curation=March 4%2C 2020;Literature_PMID=27420922,24253199;Oryzabase=8408;TENOR=Os11t0167800-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=chloroplast (GO:0009507), nucleus (GO:0005634)
Chr11	irgsp1_rep	five_prime_UTR	3279329	3279419	.	-	.	Parent=Os11t0167800-01
Chr11	irgsp1_rep	CDS	3279098	3279328	.	-	0	Parent=Os11t0167800-01
Chr11	irgsp1_rep	CDS	3278793	3278978	.	-	0	Parent=Os11t0167800-01
Chr11	irgsp1_rep	three_prime_UTR	3278451	3278792	.	-	.	Parent=Os11t0167800-01
Chr11	irgsp1_rep	mRNA	3288494	3289070	.	-	.	ID=Os11t0168000-01;Name=Os11t0168000-01;Locus_id=Os11g0168000;Note=Protein of unknown function DUF1278 family protein.;Transcript_evidence=AK062599 (DDBJ%2C Best hit);ORF_evidence=Q9SES8 (UniProt);InterPro=Protein of unknown function DUF784 (IPR008502);NIAS_FLcDNA=001-102-G11;Expression=AK062599;TENOR=Os11t0168000-01;KEGG=Os11t0168000-01
Chr11	irgsp1_rep	five_prime_UTR	3289011	3289070	.	-	.	Parent=Os11t0168000-01
Chr11	irgsp1_rep	CDS	3288576	3289010	.	-	0	Parent=Os11t0168000-01
Chr11	irgsp1_rep	three_prime_UTR	3288494	3288575	.	-	.	Parent=Os11t0168000-01
Chr11	irgsp1_rep	mRNA	3290812	3293566	.	+	.	ID=Os11t0168100-01;Name=Os11t0168100-01;Locus_id=Os11g0168100;Note=Similar to Syntaxin 61 (AtSYP61) (Osmotic stess-sensitive mutant 1).;Transcript_evidence=AK242223 (DDBJ%2C Best hit);ORF_evidence=NP_564310.1 (RefSeq);GO=Biological Process: vesicle-mediated transport (GO:0016192),Biological Process: Golgi vesicle transport (GO:0048193),Cellular Component: membrane (GO:0016020),Molecular Function: protein binding (GO:0005515);InterPro=Target SNARE coiled-coil domain (IPR000727),t-SNARE (IPR010989),Syntaxin 6%2C N-terminal (IPR015260);NIAS_FLcDNA=J075174A20;TENOR=Os11t0168100-01;KEGG=Os11t0168100-01
Chr11	irgsp1_rep	five_prime_UTR	3290812	3290924	.	+	.	Parent=Os11t0168100-01
Chr11	irgsp1_rep	CDS	3290925	3290978	.	+	0	Parent=Os11t0168100-01
Chr11	irgsp1_rep	CDS	3291715	3291828	.	+	0	Parent=Os11t0168100-01
Chr11	irgsp1_rep	CDS	3292076	3292189	.	+	0	Parent=Os11t0168100-01
Chr11	irgsp1_rep	CDS	3292278	3292435	.	+	0	Parent=Os11t0168100-01
Chr11	irgsp1_rep	CDS	3292668	3292758	.	+	1	Parent=Os11t0168100-01
Chr11	irgsp1_rep	CDS	3292934	3292993	.	+	0	Parent=Os11t0168100-01
Chr11	irgsp1_rep	CDS	3293263	3293379	.	+	0	Parent=Os11t0168100-01
Chr11	irgsp1_rep	three_prime_UTR	3293380	3293566	.	+	.	Parent=Os11t0168100-01
Chr11	irgsp1_rep	mRNA	3294155	3297022	.	+	.	ID=Os11t0168200-01;Name=Os11t0168200-01;Locus_id=Os11g0168200;RAP-DB Gene Symbol Synonym(s)=RPL3B%2C OsRPL3B%2C RML1;RAP-DB Gene Name Synonym(s)=RIBOSOMAL PROTEIN L3B%2C ribosomal protein L3B%2C RICE MINUTE-LIKE1;CGSNL Gene Symbol=RPL3B;CGSNL Gene Name=RIBOSOMAL PROTEIN L3B;Oryzabase Gene Symbol Synonym(s)=OsRPL3B%2C RPL3%2C OsRPL3;Oryzabase Gene Name Synonym(s)=ribosomal protein L3B;Note=Ribosomal large subunit protein L3B%2C Regulation of leaf morphology and plant architecture;Transcript_evidence=AK073392,AK101469;ORF_evidence=Q53JG0;GO=Biological Process: translation (GO:0006412),Molecular Function: structural constituent of ribosome (GO:0003735),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840);InterPro=Ribosomal protein L3 (IPR000597),Translation protein%2C beta-barrel domain (IPR009000),Ribosomal protein L3%2C conserved site (IPR019926);NIAS_FLcDNA=J033041E13, J033040J04;Manual Curation=June 1%2C 2016;Literature_PMID=27241493;Oryzabase=14679;TENOR=Os11t0168200-01
Chr11	irgsp1_rep	five_prime_UTR	3294155	3294224	.	+	.	Parent=Os11t0168200-01
Chr11	irgsp1_rep	five_prime_UTR	3294396	3294417	.	+	.	Parent=Os11t0168200-01
Chr11	irgsp1_rep	CDS	3294418	3294502	.	+	0	Parent=Os11t0168200-01
Chr11	irgsp1_rep	CDS	3295188	3295298	.	+	2	Parent=Os11t0168200-01
Chr11	irgsp1_rep	CDS	3295580	3295884	.	+	2	Parent=Os11t0168200-01
Chr11	irgsp1_rep	CDS	3296007	3296416	.	+	0	Parent=Os11t0168200-01
Chr11	irgsp1_rep	CDS	3296543	3296801	.	+	1	Parent=Os11t0168200-01
Chr11	irgsp1_rep	three_prime_UTR	3296802	3297022	.	+	.	Parent=Os11t0168200-01
Chr11	irgsp1_rep	mRNA	3294194	3297009	.	+	.	ID=Os11t0168200-02;Name=Os11t0168200-02;Locus_id=Os11g0168200;CGSNL Gene Symbol=RPL3B;CGSNL Gene Name=RIBOSOMAL PROTEIN L3B;Oryzabase Gene Symbol Synonym(s)=OsRPL3B%2C RPL3%2C OsRPL3;Oryzabase Gene Name Synonym(s)=ribosomal protein L3B;Note=60S ribosomal protein L3.;Transcript_evidence=AK099225 (DDBJ%2C Best hit);ORF_evidence=A5D934 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L3 (IPR000597),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Ribosomal protein L3%2C conserved site (IPR019926);NIAS_FLcDNA=J013094A07;Oryzabase=14679;Expression=AK099225;TENOR=Os11t0168200-02;KEGG=Os11t0168200-02
Chr11	irgsp1_rep	five_prime_UTR	3294194	3294224	.	+	.	Parent=Os11t0168200-02
Chr11	irgsp1_rep	five_prime_UTR	3294396	3294417	.	+	.	Parent=Os11t0168200-02
Chr11	irgsp1_rep	CDS	3294418	3294502	.	+	0	Parent=Os11t0168200-02
Chr11	irgsp1_rep	CDS	3295188	3295298	.	+	2	Parent=Os11t0168200-02
Chr11	irgsp1_rep	CDS	3295580	3295884	.	+	2	Parent=Os11t0168200-02
Chr11	irgsp1_rep	CDS	3296007	3296416	.	+	0	Parent=Os11t0168200-02
Chr11	irgsp1_rep	CDS	3296543	3296801	.	+	1	Parent=Os11t0168200-02
Chr11	irgsp1_rep	three_prime_UTR	3296802	3297009	.	+	.	Parent=Os11t0168200-02
Chr11	irgsp1_rep	mRNA	3296345	3296924	.	-	.	ID=Os11t0168250-00;Name=Os11t0168250-00;Locus_id=Os11g0168250;Note=Hypothetical gene.;Transcript_evidence=BT016883 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0168250-00;KEGG=Os11t0168250-00
Chr11	irgsp1_rep	five_prime_UTR	3296847	3296924	.	-	.	Parent=Os11t0168250-00
Chr11	irgsp1_rep	CDS	3296556	3296846	.	-	0	Parent=Os11t0168250-00
Chr11	irgsp1_rep	CDS	3296360	3296428	.	-	0	Parent=Os11t0168250-00
Chr11	irgsp1_rep	three_prime_UTR	3296345	3296359	.	-	.	Parent=Os11t0168250-00
Chr11	irgsp1_rep	mRNA	3297930	3303040	.	+	.	ID=Os11t0168300-01;Name=Os11t0168300-01;Locus_id=Os11g0168300;CGSNL Gene Symbol=ALBA8;CGSNL Gene Name=ACETYLATION LOWERS BINDING AFFINITY 8;Oryzabase Gene Symbol Synonym(s)=OsAlba8%2C Alba8;Oryzabase Gene Name Synonym(s)=acetylation lowers binding affinity protein 8%2C acetylation lowers binding affinity 8%2C Alba family protein 8;Note=Alba%2C DNA/RNA-binding protein family protein.;Transcript_evidence=AK061362 (DDBJ%2C Best hit),AK104405 (DDBJ%2C Best hit);ORF_evidence=B6T7F3 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=DNA/RNA-binding protein Alba-like (IPR002775);NIAS_FLcDNA=006-304-C01,006-203-D04;Oryzabase=22408;TENOR=Os11t0168300-01
Chr11	irgsp1_rep	five_prime_UTR	3297930	3298066	.	+	.	Parent=Os11t0168300-01
Chr11	irgsp1_rep	five_prime_UTR	3299261	3299262	.	+	.	Parent=Os11t0168300-01
Chr11	irgsp1_rep	CDS	3299263	3299385	.	+	0	Parent=Os11t0168300-01
Chr11	irgsp1_rep	CDS	3301277	3301357	.	+	0	Parent=Os11t0168300-01
Chr11	irgsp1_rep	CDS	3301446	3301534	.	+	0	Parent=Os11t0168300-01
Chr11	irgsp1_rep	CDS	3301612	3301686	.	+	1	Parent=Os11t0168300-01
Chr11	irgsp1_rep	CDS	3301812	3301870	.	+	1	Parent=Os11t0168300-01
Chr11	irgsp1_rep	CDS	3301956	3302015	.	+	2	Parent=Os11t0168300-01
Chr11	irgsp1_rep	CDS	3302363	3302614	.	+	2	Parent=Os11t0168300-01
Chr11	irgsp1_rep	CDS	3302703	3302776	.	+	2	Parent=Os11t0168300-01
Chr11	irgsp1_rep	three_prime_UTR	3302777	3303040	.	+	.	Parent=Os11t0168300-01
Chr11	irgsp1_rep	mRNA	3297985	3303077	.	+	.	ID=Os11t0168300-02;Name=Os11t0168300-02;Locus_id=Os11g0168300;CGSNL Gene Symbol=ALBA8;CGSNL Gene Name=ACETYLATION LOWERS BINDING AFFINITY 8;Oryzabase Gene Symbol Synonym(s)=OsAlba8%2C Alba8;Oryzabase Gene Name Synonym(s)=acetylation lowers binding affinity protein 8%2C acetylation lowers binding affinity 8%2C Alba family protein 8;Note=Alba%2C DNA/RNA-binding protein family protein.;Transcript_evidence=AK066507 (DDBJ%2C Best hit);ORF_evidence=B6T7F3 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=DNA/RNA-binding protein Alba-like (IPR002775);NIAS_FLcDNA=J013068F13;Oryzabase=22408;Expression=AK066507;TENOR=Os11t0168300-02;KEGG=Os11t0168300-02
Chr11	irgsp1_rep	five_prime_UTR	3297985	3298066	.	+	.	Parent=Os11t0168300-02
Chr11	irgsp1_rep	five_prime_UTR	3299261	3299262	.	+	.	Parent=Os11t0168300-02
Chr11	irgsp1_rep	CDS	3299263	3299385	.	+	0	Parent=Os11t0168300-02
Chr11	irgsp1_rep	CDS	3301277	3301357	.	+	0	Parent=Os11t0168300-02
Chr11	irgsp1_rep	CDS	3301446	3301534	.	+	0	Parent=Os11t0168300-02
Chr11	irgsp1_rep	CDS	3301612	3301686	.	+	1	Parent=Os11t0168300-02
Chr11	irgsp1_rep	CDS	3301812	3301870	.	+	1	Parent=Os11t0168300-02
Chr11	irgsp1_rep	CDS	3301956	3302015	.	+	2	Parent=Os11t0168300-02
Chr11	irgsp1_rep	CDS	3302363	3302614	.	+	2	Parent=Os11t0168300-02
Chr11	irgsp1_rep	CDS	3302703	3302776	.	+	2	Parent=Os11t0168300-02
Chr11	irgsp1_rep	three_prime_UTR	3302777	3303077	.	+	.	Parent=Os11t0168300-02
Chr11	irgsp1_rep	mRNA	3299355	3303040	.	+	.	ID=Os11t0168300-03;Name=Os11t0168300-03;Locus_id=Os11g0168300;CGSNL Gene Symbol=ALBA8;CGSNL Gene Name=ACETYLATION LOWERS BINDING AFFINITY 8;Oryzabase Gene Symbol Synonym(s)=OsAlba8%2C Alba8;Oryzabase Gene Name Synonym(s)=acetylation lowers binding affinity protein 8%2C acetylation lowers binding affinity 8%2C Alba family protein 8;Note=Similar to ribonuclease P.;Transcript_evidence=AK059745 (DDBJ%2C Best hit);ORF_evidence=B6T7F3 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=DNA/RNA-binding protein Alba-like (IPR002775);NIAS_FLcDNA=006-202-H07;Oryzabase=22408;Expression=AK059745;TENOR=Os11t0168300-03;KEGG=Os11t0168300-03
Chr11	irgsp1_rep	five_prime_UTR	3299355	3299355	.	+	.	Parent=Os11t0168300-03
Chr11	irgsp1_rep	CDS	3299356	3299385	.	+	0	Parent=Os11t0168300-03
Chr11	irgsp1_rep	CDS	3301277	3301357	.	+	0	Parent=Os11t0168300-03
Chr11	irgsp1_rep	CDS	3301446	3301534	.	+	0	Parent=Os11t0168300-03
Chr11	irgsp1_rep	CDS	3301612	3301686	.	+	1	Parent=Os11t0168300-03
Chr11	irgsp1_rep	CDS	3301812	3301870	.	+	1	Parent=Os11t0168300-03
Chr11	irgsp1_rep	CDS	3301956	3302015	.	+	2	Parent=Os11t0168300-03
Chr11	irgsp1_rep	CDS	3302363	3302614	.	+	2	Parent=Os11t0168300-03
Chr11	irgsp1_rep	CDS	3302703	3302776	.	+	2	Parent=Os11t0168300-03
Chr11	irgsp1_rep	three_prime_UTR	3302777	3303040	.	+	.	Parent=Os11t0168300-03
Chr11	irgsp1_rep	mRNA	3307571	3309567	.	-	.	ID=Os11t0168500-00;Name=Os11t0168500-00;Locus_id=Os11g0168500;CGSNL Gene Symbol=ERF118;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 118;Oryzabase Gene Symbol Synonym(s)=OsERF#118%2C OsERF118%2C AP2/EREBP#117%2C AP2/EREBP117;Oryzabase Gene Name Synonym(s)=ethylene response factor 118%2C APETALA2/ethylene-responsive element binding protein 117;Note=Hypothetical conserved gene.;Transcript_evidence=CT837590 (DDBJ%2C Best hit);ORF_evidence=NP_001147321.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);Oryzabase=10613;TENOR=Os11t0168500-00;KEGG=Os11t0168500-00
Chr11	irgsp1_rep	five_prime_UTR	3308468	3309567	.	-	.	Parent=Os11t0168500-00
Chr11	irgsp1_rep	CDS	3307682	3308467	.	-	0	Parent=Os11t0168500-00
Chr11	irgsp1_rep	three_prime_UTR	3307571	3307681	.	-	.	Parent=Os11t0168500-00
Chr11	irgsp1_rep	mRNA	3315686	3316207	.	+	.	ID=Os11t0168600-01;Name=Os11t0168600-01;Locus_id=Os11g0168600;RAP-DB Gene Symbol Synonym(s)=OsRLCK311-&Delta%3BN;RAP-DB Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 311;CGSNL Gene Symbol=RLCK311;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 311;Oryzabase Gene Symbol Synonym(s)=OsRLCK311;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 311;Note=C-terminus of receptor-like cytoplasmic kinase%2C Salinity tolerance%2C Regulation of stomata response to stress;Transcript_evidence=AK063805;ORF_evidence=C7J989;InterPro=Protein kinase-like domain superfamily (IPR011009);NIAS_FLcDNA=001-121-G02;Manual Curation=October 22%2C 2020;Literature_PMID=33080797;Oryzabase=18984;Expression=AK063805;TENOR=Os11t0168600-01;KEGG=Os11t0168600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	3315686	3315714	.	+	.	Parent=Os11t0168600-01
Chr11	irgsp1_rep	CDS	3315715	3315987	.	+	0	Parent=Os11t0168600-01
Chr11	irgsp1_rep	three_prime_UTR	3315988	3316207	.	+	.	Parent=Os11t0168600-01
Chr11	irgsp1_rep	mRNA	3314083	3316292	.	+	.	ID=Os11t0168600-02;Name=Os11t0168600-02;Locus_id=Os11g0168600;RAP-DB Gene Symbol Synonym(s)=OsRLCK311;RAP-DB Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 311;CGSNL Gene Symbol=RLCK311;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 311;Oryzabase Gene Symbol Synonym(s)=OsRLCK311;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 311;Note=Receptor-like cytoplasmic kinase%2C Salinity tolerance%2C Regulation of stomata response to stress;Transcript_evidence=Inferred from literature;ORF_evidence=Q53JG3;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),Protein kinase domain (IPR000719),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);Manual Curation=October 22%2C 2020;Literature_PMID=33080797;Oryzabase=18984
Chr11	irgsp1_rep	CDS	3314083	3314900	.	+	0	Parent=Os11t0168600-02
Chr11	irgsp1_rep	CDS	3315639	3315987	.	+	1	Parent=Os11t0168600-02
Chr11	irgsp1_rep	three_prime_UTR	3315988	3316292	.	+	.	Parent=Os11t0168600-02
Chr11	irgsp1_rep	mRNA	3332449	3338962	.	+	.	ID=Os11t0169100-01;Name=Os11t0169100-01;Locus_id=Os11g0169100;Note=Sec1-like protein family protein.;Transcript_evidence=AK072561 (DDBJ%2C Best hit);ORF_evidence=Q53JG6 (UniProt);GO=Biological Process: vesicle docking involved in exocytosis (GO:0006904),Biological Process: vesicle-mediated transport (GO:0016192);InterPro=Sec1-like protein (IPR001619);NIAS_FLcDNA=J023133P17;Expression=AK072561;TENOR=Os11t0169100-01;KEGG=Os11t0169100-01
Chr11	irgsp1_rep	five_prime_UTR	3332449	3332660	.	+	.	Parent=Os11t0169100-01
Chr11	irgsp1_rep	CDS	3332661	3332708	.	+	0	Parent=Os11t0169100-01
Chr11	irgsp1_rep	CDS	3333211	3333354	.	+	0	Parent=Os11t0169100-01
Chr11	irgsp1_rep	CDS	3334111	3334263	.	+	0	Parent=Os11t0169100-01
Chr11	irgsp1_rep	CDS	3334884	3335393	.	+	0	Parent=Os11t0169100-01
Chr11	irgsp1_rep	CDS	3335489	3337024	.	+	0	Parent=Os11t0169100-01
Chr11	irgsp1_rep	CDS	3337106	3337174	.	+	0	Parent=Os11t0169100-01
Chr11	irgsp1_rep	CDS	3338118	3338246	.	+	0	Parent=Os11t0169100-01
Chr11	irgsp1_rep	three_prime_UTR	3338247	3338962	.	+	.	Parent=Os11t0169100-01
Chr11	irgsp1_rep	mRNA	3342973	3344506	.	-	.	ID=Os11t0169200-00;Name=Os11t0169200-00;Locus_id=Os11g0169200;Oryzabase Gene Symbol Synonym(s)=OsLAX5%2C OsAUX5%2C LAX5%2C AUX5;Oryzabase Gene Name Synonym(s)=like aux1-5%2C auxin transporter 5;Note=Amino acid transporter%2C transmembrane domain containing protein.;Transcript_evidence=Q53JG7 (UniProt);ORF_evidence=Q53JG7 (UniProt);InterPro=Amino acid transporter%2C transmembrane (IPR013057);Oryzabase=11920;TENOR=Os11t0169200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	3344309	3344506	.	-	0	Parent=Os11t0169200-00
Chr11	irgsp1_rep	CDS	3342973	3344217	.	-	0	Parent=Os11t0169200-00
Chr11	irgsp1_rep	mRNA	3342980	3344492	.	+	.	ID=Os11t0169266-00;Name=Os11t0169266-00;Locus_id=Os11g0169266;Note=Hypothetical protein.;Transcript_evidence=tplb0034o11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0169266-00
Chr11	irgsp1_rep	five_prime_UTR	3342980	3343995	.	+	.	Parent=Os11t0169266-00
Chr11	irgsp1_rep	CDS	3343996	3344215	.	+	0	Parent=Os11t0169266-00
Chr11	irgsp1_rep	CDS	3344307	3344492	.	+	2	Parent=Os11t0169266-00
Chr11	irgsp1_rep	mRNA	3357459	3359728	.	+	.	ID=Os11t0169400-01;Name=Os11t0169400-01;Locus_id=Os11g0169400;Note=Similar to Zinc finger%2C C2H2 type family protein%2C expressed.;Transcript_evidence=AK110948 (DDBJ%2C Best hit);ORF_evidence=Q53JG9 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087);NIAS_FLcDNA=002-173-H08;TENOR=Os11t0169400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	3357459	3358095	.	+	0	Parent=Os11t0169400-01
Chr11	irgsp1_rep	CDS	3358551	3358914	.	+	2	Parent=Os11t0169400-01
Chr11	irgsp1_rep	CDS	3359334	3359610	.	+	1	Parent=Os11t0169400-01
Chr11	irgsp1_rep	three_prime_UTR	3359611	3359728	.	+	.	Parent=Os11t0169400-01
Chr11	irgsp1_rep	mRNA	3367151	3368898	.	-	.	ID=Os11t0169600-01;Name=Os11t0169600-01;Locus_id=Os11g0169600;Note=Hyccin domain containing protein.;Transcript_evidence=AK243614 (DDBJ%2C Best hit);ORF_evidence=NP_001065852.1 (RefSeq);InterPro=Hyccin (IPR018619);NIAS_FLcDNA=J100085M11;TENOR=Os11t0169600-01;KEGG=Os11t0169600-01
Chr11	irgsp1_rep	five_prime_UTR	3368848	3368898	.	-	.	Parent=Os11t0169600-01
Chr11	irgsp1_rep	CDS	3367561	3368847	.	-	0	Parent=Os11t0169600-01
Chr11	irgsp1_rep	three_prime_UTR	3367151	3367560	.	-	.	Parent=Os11t0169600-01
Chr11	irgsp1_rep	mRNA	3368987	3370887	.	-	.	ID=Os11t0169700-01;Name=Os11t0169700-01;Locus_id=Os11g0169700;Note=Galactose oxidase/kelch%2C beta-propeller domain containing protein.;Transcript_evidence=AK107512 (DDBJ%2C Best hit);ORF_evidence=NP_001150444.1 (RefSeq);InterPro=Glyoxal oxidase%2C N-terminal (IPR009880),Galactose oxidase/kelch%2C beta-propeller (IPR011043),Immunoglobulin-like fold (IPR013783),Immunoglobulin E-set (IPR014756),Domain of unknown function DUF1929 (IPR015202),Galactose oxidase%2C beta-propeller (IPR015916);NIAS_FLcDNA=002-129-E12;Expression=AK107512;TENOR=Os11t0169700-01;KEGG=Os11t0169700-01
Chr11	irgsp1_rep	five_prime_UTR	3370841	3370887	.	-	.	Parent=Os11t0169700-01
Chr11	irgsp1_rep	CDS	3369107	3370840	.	-	0	Parent=Os11t0169700-01
Chr11	irgsp1_rep	three_prime_UTR	3368987	3369106	.	-	.	Parent=Os11t0169700-01
Chr11	irgsp1_rep	mRNA	3374973	3377834	.	+	.	ID=Os11t0169800-01;Name=Os11t0169800-01;Locus_id=Os11g0169800;Note=Similar to Long-chain-fatty-acid--CoA ligase 4 (EC 6.2.1.3) (Long-chain acyl-CoA synthetase 4) (LACS 4).;Transcript_evidence=AK064208 (DDBJ%2C Best hit);ORF_evidence=Q9FNT6 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873);NIAS_FLcDNA=002-104-E08;Expression=AK064208;TENOR=Os11t0169800-01;KEGG=Os11t0169800-01 (EC:6.2.1.3)
Chr11	irgsp1_rep	CDS	3374973	3375077	.	+	0	Parent=Os11t0169800-01
Chr11	irgsp1_rep	CDS	3375169	3375398	.	+	0	Parent=Os11t0169800-01
Chr11	irgsp1_rep	CDS	3375577	3375694	.	+	1	Parent=Os11t0169800-01
Chr11	irgsp1_rep	CDS	3376175	3376306	.	+	0	Parent=Os11t0169800-01
Chr11	irgsp1_rep	CDS	3376388	3376522	.	+	0	Parent=Os11t0169800-01
Chr11	irgsp1_rep	CDS	3376596	3376802	.	+	0	Parent=Os11t0169800-01
Chr11	irgsp1_rep	CDS	3377380	3377544	.	+	0	Parent=Os11t0169800-01
Chr11	irgsp1_rep	three_prime_UTR	3377545	3377834	.	+	.	Parent=Os11t0169800-01
Chr11	irgsp1_rep	mRNA	3378031	3380310	.	-	.	ID=Os11t0169900-01;Name=Os11t0169900-01;Locus_id=Os11g0169900;CGSNL Gene Name=VACUOLAR H+ -ATPASE;Oryzabase Gene Name Synonym(s)=vacuolar H+ -ATPase%2C OsV-ATPase%2C V-ATPase;Note=Similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (EC 3.6.3.14) (V- ATPase 16 kDa proteolipid subunit) (Fragment).;Transcript_evidence=AK105044 (DDBJ%2C Best hit);ORF_evidence=Q0IUB5 (UniProt);GO=Biological Process: ATP hydrolysis coupled proton transport (GO:0015991),Cellular Component: proton-transporting two-sector ATPase complex%2C proton-transporting domain (GO:0033177),Cellular Component: proton-transporting V-type ATPase%2C V0 domain (GO:0033179),Molecular Function: hydrogen ion transmembrane transporter activity (GO:0015078);InterPro=ATPase%2C V0 complex%2C proteolipid subunit C (IPR000245),ATPase%2C F0/V0 complex%2C subunit C (IPR002379),ATPase%2C V0 complex%2C proteolipid subunit C%2C eukaryotic (IPR011555);NIAS_FLcDNA=001-038-H05;Oryzabase=23525;TENOR=Os11t0169900-01
Chr11	irgsp1_rep	five_prime_UTR	3380140	3380310	.	-	.	Parent=Os11t0169900-01
Chr11	irgsp1_rep	CDS	3380061	3380139	.	-	0	Parent=Os11t0169900-01
Chr11	irgsp1_rep	CDS	3379462	3379747	.	-	2	Parent=Os11t0169900-01
Chr11	irgsp1_rep	CDS	3378387	3378519	.	-	1	Parent=Os11t0169900-01
Chr11	irgsp1_rep	three_prime_UTR	3378031	3378386	.	-	.	Parent=Os11t0169900-01
Chr11	irgsp1_rep	mRNA	3378052	3380240	.	-	.	ID=Os11t0169900-02;Name=Os11t0169900-02;Locus_id=Os11g0169900;CGSNL Gene Name=VACUOLAR H+ -ATPASE;Oryzabase Gene Name Synonym(s)=vacuolar H+ -ATPase%2C OsV-ATPase%2C V-ATPase;Note=Similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (EC 3.6.3.14) (V- ATPase 16 kDa proteolipid subunit) (Fragment).;Transcript_evidence=AK121233 (DDBJ%2C Best hit);ORF_evidence=Q0IUB5 (UniProt);GO=Biological Process: ATP hydrolysis coupled proton transport (GO:0015991),Cellular Component: proton-transporting two-sector ATPase complex%2C proton-transporting domain (GO:0033177),Cellular Component: proton-transporting V-type ATPase%2C V0 domain (GO:0033179),Molecular Function: hydrogen ion transmembrane transporter activity (GO:0015078);InterPro=ATPase%2C V0 complex%2C proteolipid subunit C (IPR000245),ATPase%2C F0/V0 complex%2C subunit C (IPR002379),ATPase%2C V0 complex%2C proteolipid subunit C%2C eukaryotic (IPR011555);NIAS_FLcDNA=J023093E21;Oryzabase=23525;TENOR=Os11t0169900-02
Chr11	irgsp1_rep	five_prime_UTR	3380140	3380240	.	-	.	Parent=Os11t0169900-02
Chr11	irgsp1_rep	CDS	3380061	3380139	.	-	0	Parent=Os11t0169900-02
Chr11	irgsp1_rep	CDS	3379462	3379747	.	-	2	Parent=Os11t0169900-02
Chr11	irgsp1_rep	CDS	3378387	3378519	.	-	1	Parent=Os11t0169900-02
Chr11	irgsp1_rep	three_prime_UTR	3378052	3378386	.	-	.	Parent=Os11t0169900-02
Chr11	irgsp1_rep	mRNA	3382390	3388871	.	-	.	ID=Os11t0170000-01;Name=Os11t0170000-01;Locus_id=Os11g0170000;Note=Similar to Amidase family protein%2C expressed.;Transcript_evidence=AK106809 (DDBJ%2C Best hit);ORF_evidence=Q2RA14 (UniProt);GO=Molecular Function: carbon-nitrogen ligase activity%2C with glutamine as amido-N-donor (GO:0016884);InterPro=Amidase (IPR000120),Amidase signature domain (IPR023631);NIAS_FLcDNA=002-116-C08;TENOR=Os11t0170000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	3388791	3388871	.	-	.	Parent=Os11t0170000-01
Chr11	irgsp1_rep	CDS	3388691	3388790	.	-	0	Parent=Os11t0170000-01
Chr11	irgsp1_rep	CDS	3388448	3388557	.	-	2	Parent=Os11t0170000-01
Chr11	irgsp1_rep	CDS	3388245	3388305	.	-	0	Parent=Os11t0170000-01
Chr11	irgsp1_rep	CDS	3387897	3388087	.	-	2	Parent=Os11t0170000-01
Chr11	irgsp1_rep	CDS	3387569	3387698	.	-	0	Parent=Os11t0170000-01
Chr11	irgsp1_rep	CDS	3386597	3386674	.	-	2	Parent=Os11t0170000-01
Chr11	irgsp1_rep	CDS	3385607	3385754	.	-	2	Parent=Os11t0170000-01
Chr11	irgsp1_rep	CDS	3385389	3385501	.	-	1	Parent=Os11t0170000-01
Chr11	irgsp1_rep	CDS	3384606	3384681	.	-	2	Parent=Os11t0170000-01
Chr11	irgsp1_rep	CDS	3384410	3384481	.	-	1	Parent=Os11t0170000-01
Chr11	irgsp1_rep	CDS	3384252	3384294	.	-	1	Parent=Os11t0170000-01
Chr11	irgsp1_rep	CDS	3384087	3384158	.	-	0	Parent=Os11t0170000-01
Chr11	irgsp1_rep	CDS	3383931	3384011	.	-	0	Parent=Os11t0170000-01
Chr11	irgsp1_rep	CDS	3383682	3383785	.	-	0	Parent=Os11t0170000-01
Chr11	irgsp1_rep	CDS	3383482	3383574	.	-	1	Parent=Os11t0170000-01
Chr11	irgsp1_rep	CDS	3383310	3383378	.	-	1	Parent=Os11t0170000-01
Chr11	irgsp1_rep	CDS	3383150	3383214	.	-	1	Parent=Os11t0170000-01
Chr11	irgsp1_rep	CDS	3382874	3383031	.	-	2	Parent=Os11t0170000-01
Chr11	irgsp1_rep	CDS	3382670	3382738	.	-	0	Parent=Os11t0170000-01
Chr11	irgsp1_rep	three_prime_UTR	3382390	3382669	.	-	.	Parent=Os11t0170000-01
Chr11	irgsp1_rep	mRNA	3385345	3388990	.	+	.	ID=Os11t0170100-01;Name=Os11t0170100-01;Locus_id=Os11g0170100;Note=Similar to 6-aminohexanoate-cyclic-dimer hydrolase (EC 3.5.2.12).;Transcript_evidence=AK066442 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013066H12;Expression=AK066442;TENOR=Os11t0170100-01;KEGG=Os11t0170100-01 (EC:3.5.2.12)
Chr11	irgsp1_rep	five_prime_UTR	3385345	3387038	.	+	.	Parent=Os11t0170100-01
Chr11	irgsp1_rep	CDS	3387039	3387317	.	+	0	Parent=Os11t0170100-01
Chr11	irgsp1_rep	three_prime_UTR	3387318	3387770	.	+	.	Parent=Os11t0170100-01
Chr11	irgsp1_rep	three_prime_UTR	3387905	3388128	.	+	.	Parent=Os11t0170100-01
Chr11	irgsp1_rep	three_prime_UTR	3388428	3388990	.	+	.	Parent=Os11t0170100-01
Chr11	irgsp1_rep	mRNA	3389321	3395923	.	-	.	ID=Os11t0170200-01;Name=Os11t0170200-01;Locus_id=Os11g0170200;Note=Protein of unknown function DUF869%2C plant family protein.;Transcript_evidence=AK073389 (DDBJ%2C Best hit);ORF_evidence=A2ZBW7 (UniProt);InterPro=Protein of unknown function DUF869%2C plant (IPR008587);NIAS_FLcDNA=J033043I15;Expression=AK073389;TENOR=Os11t0170200-01;KEGG=Os11t0170200-01
Chr11	irgsp1_rep	five_prime_UTR	3395616	3395923	.	-	.	Parent=Os11t0170200-01
Chr11	irgsp1_rep	five_prime_UTR	3394316	3394485	.	-	.	Parent=Os11t0170200-01
Chr11	irgsp1_rep	five_prime_UTR	3393017	3393098	.	-	.	Parent=Os11t0170200-01
Chr11	irgsp1_rep	CDS	3392987	3393016	.	-	0	Parent=Os11t0170200-01
Chr11	irgsp1_rep	CDS	3392554	3392878	.	-	0	Parent=Os11t0170200-01
Chr11	irgsp1_rep	CDS	3390209	3392217	.	-	2	Parent=Os11t0170200-01
Chr11	irgsp1_rep	CDS	3389428	3389769	.	-	0	Parent=Os11t0170200-01
Chr11	irgsp1_rep	three_prime_UTR	3389321	3389427	.	-	.	Parent=Os11t0170200-01
Chr11	irgsp1_rep	mRNA	3418636	3424010	.	-	.	ID=Os11t0170300-01;Name=Os11t0170300-01;Locus_id=Os11g0170300;Oryzabase Gene Symbol Synonym(s)=OsCBSCBSPB2;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSCBSPB2%2C CBS domain containing protein OsCBSCBSPB2;Note=Similar to CBS domain containing protein.;Transcript_evidence=AK240940 (DDBJ%2C Best hit);ORF_evidence=NP_001148069.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein binding (GO:0005515);InterPro=Phox/Bem1p (IPR000270),Cystathionine beta-synthase%2C core (IPR000644),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J065042D15;Oryzabase=10352;TENOR=Os11t0170300-01;KEGG=Os11t0170300-01
Chr11	irgsp1_rep	five_prime_UTR	3423863	3424010	.	-	.	Parent=Os11t0170300-01
Chr11	irgsp1_rep	CDS	3423720	3423862	.	-	0	Parent=Os11t0170300-01
Chr11	irgsp1_rep	CDS	3423475	3423634	.	-	1	Parent=Os11t0170300-01
Chr11	irgsp1_rep	CDS	3422736	3422868	.	-	0	Parent=Os11t0170300-01
Chr11	irgsp1_rep	CDS	3421790	3421960	.	-	2	Parent=Os11t0170300-01
Chr11	irgsp1_rep	CDS	3421412	3421490	.	-	2	Parent=Os11t0170300-01
Chr11	irgsp1_rep	CDS	3421068	3421181	.	-	1	Parent=Os11t0170300-01
Chr11	irgsp1_rep	CDS	3420901	3420967	.	-	1	Parent=Os11t0170300-01
Chr11	irgsp1_rep	CDS	3420695	3420800	.	-	0	Parent=Os11t0170300-01
Chr11	irgsp1_rep	CDS	3420545	3420603	.	-	2	Parent=Os11t0170300-01
Chr11	irgsp1_rep	CDS	3420348	3420457	.	-	0	Parent=Os11t0170300-01
Chr11	irgsp1_rep	CDS	3420141	3420268	.	-	1	Parent=Os11t0170300-01
Chr11	irgsp1_rep	CDS	3419978	3420060	.	-	2	Parent=Os11t0170300-01
Chr11	irgsp1_rep	CDS	3419448	3419537	.	-	0	Parent=Os11t0170300-01
Chr11	irgsp1_rep	CDS	3419093	3419332	.	-	0	Parent=Os11t0170300-01
Chr11	irgsp1_rep	three_prime_UTR	3418636	3419092	.	-	.	Parent=Os11t0170300-01
Chr11	irgsp1_rep	mRNA	3425822	3433332	.	+	.	ID=Os11t0170400-01;Name=Os11t0170400-01;Locus_id=Os11g0170400;Note=Conserved hypothetical protein.;Transcript_evidence=AK065042 (DDBJ%2C Best hit);ORF_evidence=B9G9L8 (UniProt);NIAS_FLcDNA=J013001H20;Expression=AK065042;TENOR=Os11t0170400-01;KEGG=Os11t0170400-01
Chr11	irgsp1_rep	five_prime_UTR	3425822	3426172	.	+	.	Parent=Os11t0170400-01
Chr11	irgsp1_rep	five_prime_UTR	3426241	3426445	.	+	.	Parent=Os11t0170400-01
Chr11	irgsp1_rep	five_prime_UTR	3426537	3426600	.	+	.	Parent=Os11t0170400-01
Chr11	irgsp1_rep	five_prime_UTR	3426668	3426756	.	+	.	Parent=Os11t0170400-01
Chr11	irgsp1_rep	five_prime_UTR	3427022	3427120	.	+	.	Parent=Os11t0170400-01
Chr11	irgsp1_rep	five_prime_UTR	3427509	3427715	.	+	.	Parent=Os11t0170400-01
Chr11	irgsp1_rep	five_prime_UTR	3428754	3428886	.	+	.	Parent=Os11t0170400-01
Chr11	irgsp1_rep	five_prime_UTR	3429273	3429397	.	+	.	Parent=Os11t0170400-01
Chr11	irgsp1_rep	five_prime_UTR	3430273	3430326	.	+	.	Parent=Os11t0170400-01
Chr11	irgsp1_rep	CDS	3430327	3430402	.	+	0	Parent=Os11t0170400-01
Chr11	irgsp1_rep	CDS	3430747	3430809	.	+	2	Parent=Os11t0170400-01
Chr11	irgsp1_rep	CDS	3430919	3430969	.	+	2	Parent=Os11t0170400-01
Chr11	irgsp1_rep	CDS	3432042	3432166	.	+	2	Parent=Os11t0170400-01
Chr11	irgsp1_rep	three_prime_UTR	3432167	3433332	.	+	.	Parent=Os11t0170400-01
Chr11	irgsp1_rep	mRNA	3425833	3432452	.	+	.	ID=Os11t0170400-02;Name=Os11t0170400-02;Locus_id=Os11g0170400;Note=Conserved hypothetical protein.;Transcript_evidence=AK066519 (DDBJ%2C Best hit);ORF_evidence=NP_001176752.1 (RefSeq);NIAS_FLcDNA=J013069M18;Expression=AK066519;TENOR=Os11t0170400-02;KEGG=Os11t0170400-02
Chr11	irgsp1_rep	five_prime_UTR	3425833	3425992	.	+	.	Parent=Os11t0170400-02
Chr11	irgsp1_rep	CDS	3425993	3426172	.	+	0	Parent=Os11t0170400-02
Chr11	irgsp1_rep	CDS	3426241	3426351	.	+	0	Parent=Os11t0170400-02
Chr11	irgsp1_rep	three_prime_UTR	3426352	3426445	.	+	.	Parent=Os11t0170400-02
Chr11	irgsp1_rep	three_prime_UTR	3426537	3426600	.	+	.	Parent=Os11t0170400-02
Chr11	irgsp1_rep	three_prime_UTR	3426668	3428886	.	+	.	Parent=Os11t0170400-02
Chr11	irgsp1_rep	three_prime_UTR	3429273	3429397	.	+	.	Parent=Os11t0170400-02
Chr11	irgsp1_rep	three_prime_UTR	3430273	3430402	.	+	.	Parent=Os11t0170400-02
Chr11	irgsp1_rep	three_prime_UTR	3430752	3430809	.	+	.	Parent=Os11t0170400-02
Chr11	irgsp1_rep	three_prime_UTR	3430919	3430969	.	+	.	Parent=Os11t0170400-02
Chr11	irgsp1_rep	three_prime_UTR	3432042	3432452	.	+	.	Parent=Os11t0170400-02
Chr11	irgsp1_rep	mRNA	3463917	3467995	.	-	.	ID=Os11t0170900-01;Name=Os11t0170900-01;Locus_id=Os11g0170900;Oryzabase Gene Symbol Synonym(s)=OsBURP17;Oryzabase Gene Name Synonym(s)=BURP domain-containing protein 17;Note=Similar to BURP domain-containing protein 17.;Transcript_evidence=AK067523 (DDBJ%2C Best hit);ORF_evidence=B9G9L9 (UniProt);NIAS_FLcDNA=J013107B22;Oryzabase=15053;TENOR=Os11t0170900-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	3467945	3467995	.	-	.	Parent=Os11t0170900-01
Chr11	irgsp1_rep	CDS	3467906	3467944	.	-	0	Parent=Os11t0170900-01
Chr11	irgsp1_rep	CDS	3465614	3466042	.	-	0	Parent=Os11t0170900-01
Chr11	irgsp1_rep	CDS	3465451	3465483	.	-	0	Parent=Os11t0170900-01
Chr11	irgsp1_rep	three_prime_UTR	3463917	3465450	.	-	.	Parent=Os11t0170900-01
Chr11	irgsp1_rep	mRNA	3482421	3483866	.	+	.	ID=Os11t0171100-00;Name=Os11t0171100-00;Locus_id=Os11g0171100;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q53P80 (UniProt);TENOR=Os11t0171100-00
Chr11	irgsp1_rep	CDS	3482421	3483866	.	+	0	Parent=Os11t0171100-00
Chr11	irgsp1_rep	mRNA	3488768	3491609	.	-	.	ID=Os11t0171300-01;Name=Os11t0171300-01;Locus_id=Os11g0171300;CGSNL Gene Symbol=ALDP;CGSNL Gene Name=CHLOROPLAST ALDOLASE;Oryzabase Gene Symbol Synonym(s)=Aldo%2C OsALDO%2C ALDO%2C FBAase%2C OsFBAase;Oryzabase Gene Name Synonym(s)=chloroplast aldolase%2C "Fructose-bisphosphate aldolase%2C chloroplastic"%2C "aldolase%2C fructose-1%2C 6-bisphosphate aldolase";Note=Fructose-bisphosphate aldolase%2C chloroplast precursor (EC 4.1.2.13) (ALDP).;Transcript_evidence=AK104899 (DDBJ%2C Best hit),AK073758 (DDBJ%2C Best hit);ORF_evidence=A2ZBX1 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: fructose-bisphosphate aldolase activity (GO:0004332);InterPro=Fructose-bisphosphate aldolase%2C class-I (IPR000741),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=001-046-C04,J033068O18;Oryzabase=2215;Expression=AK104899;TENOR=Os11t0171300-01;KEGG=Os11t0171300-01 (EC:4.1.2.13)
Chr11	irgsp1_rep	five_prime_UTR	3491516	3491609	.	-	.	Parent=Os11t0171300-01
Chr11	irgsp1_rep	CDS	3491369	3491515	.	-	0	Parent=Os11t0171300-01
Chr11	irgsp1_rep	CDS	3490468	3490737	.	-	0	Parent=Os11t0171300-01
Chr11	irgsp1_rep	CDS	3490182	3490291	.	-	0	Parent=Os11t0171300-01
Chr11	irgsp1_rep	CDS	3489987	3490077	.	-	1	Parent=Os11t0171300-01
Chr11	irgsp1_rep	CDS	3489616	3489885	.	-	0	Parent=Os11t0171300-01
Chr11	irgsp1_rep	CDS	3488999	3489277	.	-	0	Parent=Os11t0171300-01
Chr11	irgsp1_rep	three_prime_UTR	3488768	3488998	.	-	.	Parent=Os11t0171300-01
Chr11	irgsp1_rep	mRNA	3490175	3490738	.	+	.	ID=Os11t0171350-00;Name=Os11t0171350-00;Locus_id=Os11g0171350;Note=Non-protein coding transcript.;Transcript_evidence=BT086897 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0171350-00
Chr11	irgsp1_rep	exon	3490175	3490264	.	+	.	Parent=Os11t0171350-00
Chr11	irgsp1_rep	exon	3490442	3490738	.	+	.	Parent=Os11t0171350-00
Chr11	irgsp1_rep	mRNA	3492862	3494408	.	-	.	ID=Os11t0171400-01;Name=Os11t0171400-01;Locus_id=Os11g0171400;Note=Integrator complex%2C subunit 3 domain containing protein.;Transcript_evidence=AK107165 (DDBJ%2C Best hit);ORF_evidence=A3C921 (UniProt);InterPro=Integrator complex%2C subunit 3 (IPR019333);NIAS_FLcDNA=002-124-F07;TENOR=Os11t0171400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	3493263	3494408	.	-	0	Parent=Os11t0171400-01
Chr11	irgsp1_rep	three_prime_UTR	3492862	3493262	.	-	.	Parent=Os11t0171400-01
Chr11	irgsp1_rep	mRNA	3492463	3494100	.	-	.	ID=Os11t0171400-02;Name=Os11t0171400-02;Locus_id=Os11g0171400;Note=Integrator complex%2C subunit 3 domain containing protein.;Transcript_evidence=AK107313 (DDBJ%2C Best hit);ORF_evidence=A3C921 (UniProt);InterPro=Integrator complex%2C subunit 3 (IPR019333);NIAS_FLcDNA=002-126-D10;TENOR=Os11t0171400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	3494100	3494100	.	-	.	Parent=Os11t0171400-02
Chr11	irgsp1_rep	CDS	3493263	3494099	.	-	0	Parent=Os11t0171400-02
Chr11	irgsp1_rep	three_prime_UTR	3492463	3493262	.	-	.	Parent=Os11t0171400-02
Chr11	irgsp1_rep	mRNA	3495277	3499934	.	-	.	ID=Os11t0171500-01;Name=Os11t0171500-01;Locus_id=Os11g0171500;RAP-DB Gene Symbol Synonym(s)=CDPK24%2C OsCDPK14%2C OsCPK24;RAP-DB Gene Name Synonym(s)=CALCIUM-DEPENDENT PROTEIN KINASE 24%2C calcium-dependent protein kinase 14;CGSNL Gene Symbol=CDPK24;CGSNL Gene Name=CALCIUM-DEPENDENT PROTEIN KINASE 24;Oryzabase Gene Symbol Synonym(s)=OsCDPK24%2C OsCPK24%2C OsCDPK14;Oryzabase Gene Name Synonym(s)=calcium-dependent protein kinase%2C calcium-dependent protein kinase 14;Note=Calcium-dependent protein kinase;Transcript_evidence=AK102308;ORF_evidence=Q53P85;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),EF-hand domain pair (IPR011992),EF-hand domain (IPR002048),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271),EF-Hand 1%2C calcium-binding site (IPR018247);NIAS_FLcDNA=J033090B04;Manual Curation=April 28%2C 2017;Literature_PMID=27627618,16255173,15695435;Oryzabase=8075;Expression=AK102308;TENOR=Os11t0171500-01;KEGG=Os11t0171500-01 (EC:2.7.11.1);Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737)
Chr11	irgsp1_rep	five_prime_UTR	3499345	3499934	.	-	.	Parent=Os11t0171500-01
Chr11	irgsp1_rep	five_prime_UTR	3499185	3499254	.	-	.	Parent=Os11t0171500-01
Chr11	irgsp1_rep	CDS	3498581	3499184	.	-	0	Parent=Os11t0171500-01
Chr11	irgsp1_rep	CDS	3497480	3497623	.	-	2	Parent=Os11t0171500-01
Chr11	irgsp1_rep	CDS	3497241	3497393	.	-	2	Parent=Os11t0171500-01
Chr11	irgsp1_rep	CDS	3497015	3497130	.	-	2	Parent=Os11t0171500-01
Chr11	irgsp1_rep	CDS	3496290	3496457	.	-	0	Parent=Os11t0171500-01
Chr11	irgsp1_rep	CDS	3495816	3496040	.	-	0	Parent=Os11t0171500-01
Chr11	irgsp1_rep	CDS	3495598	3495729	.	-	0	Parent=Os11t0171500-01
Chr11	irgsp1_rep	three_prime_UTR	3495277	3495597	.	-	.	Parent=Os11t0171500-01
Chr11	irgsp1_rep	mRNA	3498579	3499186	.	+	.	ID=Os11t0171601-00;Name=Os11t0171601-00;Locus_id=Os11g0171601;Note=Hypothetical gene.;Transcript_evidence=BT084847 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0171601-00
Chr11	irgsp1_rep	CDS	3498579	3499186	.	+	0	Parent=Os11t0171601-00
Chr11	irgsp1_rep	mRNA	3506842	3512780	.	-	.	ID=Os11t0171700-01;Name=Os11t0171700-01;Locus_id=Os11g0171700;Note=Forkhead-associated domain containing protein.;Transcript_evidence=AK099115 (DDBJ%2C Best hit);ORF_evidence=B9G9M0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Forkhead-associated (FHA) domain (IPR000253),SMAD/FHA domain (IPR008984);NIAS_FLcDNA=J023038C07;Expression=AK099115;TENOR=Os11t0171700-01;KEGG=Os11t0171700-01
Chr11	irgsp1_rep	five_prime_UTR	3512565	3512780	.	-	.	Parent=Os11t0171700-01
Chr11	irgsp1_rep	CDS	3512279	3512564	.	-	0	Parent=Os11t0171700-01
Chr11	irgsp1_rep	CDS	3511841	3512037	.	-	2	Parent=Os11t0171700-01
Chr11	irgsp1_rep	CDS	3511691	3511750	.	-	0	Parent=Os11t0171700-01
Chr11	irgsp1_rep	CDS	3508733	3510703	.	-	0	Parent=Os11t0171700-01
Chr11	irgsp1_rep	CDS	3508484	3508634	.	-	0	Parent=Os11t0171700-01
Chr11	irgsp1_rep	CDS	3507484	3507869	.	-	2	Parent=Os11t0171700-01
Chr11	irgsp1_rep	CDS	3507070	3507357	.	-	0	Parent=Os11t0171700-01
Chr11	irgsp1_rep	three_prime_UTR	3506842	3507069	.	-	.	Parent=Os11t0171700-01
Chr11	irgsp1_rep	mRNA	3506878	3509420	.	-	.	ID=Os11t0171700-02;Name=Os11t0171700-02;Locus_id=Os11g0171700;Note=Hypothetical conserved gene.;Transcript_evidence=AK064084 (DDBJ%2C Best hit);ORF_evidence=B9G9M0 (UniProt);NIAS_FLcDNA=002-100-B10;Expression=AK064084;TENOR=Os11t0171700-02;KEGG=Os11t0171700-02
Chr11	irgsp1_rep	five_prime_UTR	3509420	3509420	.	-	.	Parent=Os11t0171700-02
Chr11	irgsp1_rep	CDS	3508733	3509419	.	-	0	Parent=Os11t0171700-02
Chr11	irgsp1_rep	CDS	3508484	3508634	.	-	0	Parent=Os11t0171700-02
Chr11	irgsp1_rep	CDS	3507484	3507869	.	-	2	Parent=Os11t0171700-02
Chr11	irgsp1_rep	CDS	3507070	3507357	.	-	0	Parent=Os11t0171700-02
Chr11	irgsp1_rep	three_prime_UTR	3506878	3507069	.	-	.	Parent=Os11t0171700-02
Chr11	irgsp1_rep	mRNA	3517802	3522211	.	+	.	ID=Os11t0171800-01;Name=Os11t0171800-01;Locus_id=Os11g0171800;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK111810 (DDBJ%2C Best hit);ORF_evidence=Q53PD4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013128E12;Expression=AK111810;TENOR=Os11t0171800-01;KEGG=Os11t0171800-01
Chr11	irgsp1_rep	five_prime_UTR	3517802	3518004	.	+	.	Parent=Os11t0171800-01
Chr11	irgsp1_rep	five_prime_UTR	3518093	3518207	.	+	.	Parent=Os11t0171800-01
Chr11	irgsp1_rep	five_prime_UTR	3518417	3518479	.	+	.	Parent=Os11t0171800-01
Chr11	irgsp1_rep	five_prime_UTR	3518669	3518684	.	+	.	Parent=Os11t0171800-01
Chr11	irgsp1_rep	CDS	3518685	3521358	.	+	0	Parent=Os11t0171800-01
Chr11	irgsp1_rep	CDS	3521508	3521917	.	+	2	Parent=Os11t0171800-01
Chr11	irgsp1_rep	three_prime_UTR	3521918	3522211	.	+	.	Parent=Os11t0171800-01
Chr11	irgsp1_rep	mRNA	3532246	3533854	.	+	.	ID=Os11t0172100-00;Name=Os11t0172100-00;Locus_id=Os11g0172100;CGSNL Gene Symbol=PME30;CGSNL Gene Name=PECTIN METHYLESTERASE 30;Oryzabase Gene Symbol Synonym(s)=OsPME30;Oryzabase Gene Name Synonym(s)=pectin methylesterase 30;Note=Similar to Pectinesterase.;Transcript_evidence=EU951656 (DDBJ);ORF_evidence=Q53P90 (UniProt);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectinesterase inhibitor (IPR006501),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),Pectinesterase%2C active site (IPR018040);Oryzabase=13194;TENOR=Os11t0172100-00;KEGG=Os11t0172100-00
Chr11	irgsp1_rep	CDS	3532246	3533847	.	+	0	Parent=Os11t0172100-00
Chr11	irgsp1_rep	three_prime_UTR	3533848	3533854	.	+	.	Parent=Os11t0172100-00
Chr11	irgsp1_rep	mRNA	3535566	3536200	.	+	.	ID=Os11t0172133-00;Name=Os11t0172133-00;Locus_id=Os11g0172133;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q53P89 (UniProt);TENOR=Os11t0172133-00;KEGG=Os11t0172133-00
Chr11	irgsp1_rep	CDS	3535566	3535688	.	+	0	Parent=Os11t0172133-00
Chr11	irgsp1_rep	CDS	3535994	3536200	.	+	0	Parent=Os11t0172133-00
Chr11	irgsp1_rep	mRNA	3536690	3539862	.	+	.	ID=Os11t0172150-00;Name=Os11t0172150-00;Locus_id=Os11g0172150;Note=Similar to Leucine Rich Repeat family protein%2C expressed.;Transcript_evidence=AK370810 (DDBJ);ORF_evidence=Q53P88 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os11t0172150-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	3536690	3536728	.	+	.	Parent=Os11t0172150-00
Chr11	irgsp1_rep	CDS	3536729	3539399	.	+	0	Parent=Os11t0172150-00
Chr11	irgsp1_rep	CDS	3539489	3539862	.	+	2	Parent=Os11t0172150-00
Chr11	irgsp1_rep	mRNA	3548138	3552433	.	+	.	ID=Os11t0172300-01;Name=Os11t0172300-01;Locus_id=Os11g0172300;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=AK072523 (DDBJ%2C Best hit);ORF_evidence=B8BJC1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J023132D06;TENOR=Os11t0172300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	3548138	3548471	.	+	.	Parent=Os11t0172300-01
Chr11	irgsp1_rep	five_prime_UTR	3548598	3548956	.	+	.	Parent=Os11t0172300-01
Chr11	irgsp1_rep	five_prime_UTR	3549045	3549220	.	+	.	Parent=Os11t0172300-01
Chr11	irgsp1_rep	five_prime_UTR	3549639	3549753	.	+	.	Parent=Os11t0172300-01
Chr11	irgsp1_rep	five_prime_UTR	3549893	3549902	.	+	.	Parent=Os11t0172300-01
Chr11	irgsp1_rep	CDS	3549903	3551036	.	+	0	Parent=Os11t0172300-01
Chr11	irgsp1_rep	three_prime_UTR	3551037	3551523	.	+	.	Parent=Os11t0172300-01
Chr11	irgsp1_rep	three_prime_UTR	3551875	3552433	.	+	.	Parent=Os11t0172300-01
Chr11	irgsp1_rep	mRNA	3548153	3548793	.	+	.	ID=Os11t0172300-02;Name=Os11t0172300-02;Locus_id=Os11g0172300;Note=Hypothetical protein.;Transcript_evidence=AK111102 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-175-H02;Expression=AK111102;TENOR=Os11t0172300-02;KEGG=Os11t0172300-02
Chr11	irgsp1_rep	five_prime_UTR	3548153	3548224	.	+	.	Parent=Os11t0172300-02
Chr11	irgsp1_rep	CDS	3548225	3548471	.	+	0	Parent=Os11t0172300-02
Chr11	irgsp1_rep	CDS	3548598	3548635	.	+	2	Parent=Os11t0172300-02
Chr11	irgsp1_rep	three_prime_UTR	3548636	3548793	.	+	.	Parent=Os11t0172300-02
Chr11	irgsp1_rep	mRNA	3552205	3553450	.	-	.	ID=Os11t0172350-00;Name=Os11t0172350-00;Locus_id=Os11g0172350;CGSNL Gene Symbol=RLCK312;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 312;Oryzabase Gene Symbol Synonym(s)=OsRLCK312;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 312;Note=Similar to Protein kinase domain containing protein.;Transcript_evidence=FP100658 (DDBJ);ORF_evidence=Q53PE2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18985;TENOR=Os11t0172350-00
Chr11	irgsp1_rep	CDS	3552673	3553450	.	-	0	Parent=Os11t0172350-00
Chr11	irgsp1_rep	CDS	3552205	3552572	.	-	2	Parent=Os11t0172350-00
Chr11	irgsp1_rep	mRNA	3557604	3557873	.	+	.	ID=Os11t0172400-00;Name=Os11t0172400-00;Locus_id=Os11g0172400;Note=Similar to Protein kinase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q53PE2 (UniProt);TENOR=Os11t0172400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	3557604	3557873	.	+	0	Parent=Os11t0172400-00
Chr11	irgsp1_rep	mRNA	3607019	3608532	.	+	.	ID=Os11t0173100-01;Name=Os11t0173100-01;Locus_id=Os11g0173100;Note=Non-protein coding transcript.;Transcript_evidence=AK067881 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013122M10;TENOR=Os11t0173100-01
Chr11	irgsp1_rep	exon	3607019	3608532	.	+	.	Parent=Os11t0173100-01
Chr11	irgsp1_rep	mRNA	3617310	3619647	.	-	.	ID=Os11t0173366-01;Name=Os11t0173366-01;Locus_id=Os11g0173366;Note=Hypothetical gene.;Transcript_evidence=AK288658 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090057F17;TENOR=Os11t0173366-01;KEGG=Os11t0173366-01
Chr11	irgsp1_rep	five_prime_UTR	3618644	3619647	.	-	.	Parent=Os11t0173366-01
Chr11	irgsp1_rep	CDS	3618338	3618643	.	-	0	Parent=Os11t0173366-01
Chr11	irgsp1_rep	three_prime_UTR	3617310	3618337	.	-	.	Parent=Os11t0173366-01
Chr11	irgsp1_rep	mRNA	3627548	3631952	.	+	.	ID=Os11t0173432-00;Name=Os11t0173432-00;Locus_id=Os11g0173432;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G9M5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os11t0173432-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	3627548	3630209	.	+	0	Parent=Os11t0173432-00
Chr11	irgsp1_rep	CDS	3630326	3630642	.	+	2	Parent=Os11t0173432-00
Chr11	irgsp1_rep	CDS	3630827	3631496	.	+	0	Parent=Os11t0173432-00
Chr11	irgsp1_rep	CDS	3631585	3631952	.	+	2	Parent=Os11t0173432-00
Chr11	irgsp1_rep	mRNA	3633303	3638002	.	+	.	ID=Os11t0173500-01;Name=Os11t0173500-01;Locus_id=Os11g0173500;CGSNL Gene Symbol=HWI1;CGSNL Gene Name=HYBRID WEAKNESS I 1;Oryzabase Gene Symbol Synonym(s)=25L1;Oryzabase Gene Name Synonym(s)=LOC_Os11g07225-like 1;Note=Leucine-rich repeat%2C typical subtype domain containing protein.;Transcript_evidence=AK103155 (DDBJ%2C Best hit);ORF_evidence=Q2R9X8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033121A10;Oryzabase=19627;TENOR=Os11t0173500-01
Chr11	irgsp1_rep	five_prime_UTR	3633303	3633595	.	+	.	Parent=Os11t0173500-01
Chr11	irgsp1_rep	five_prime_UTR	3634048	3634235	.	+	.	Parent=Os11t0173500-01
Chr11	irgsp1_rep	five_prime_UTR	3634779	3635018	.	+	.	Parent=Os11t0173500-01
Chr11	irgsp1_rep	five_prime_UTR	3635103	3635203	.	+	.	Parent=Os11t0173500-01
Chr11	irgsp1_rep	five_prime_UTR	3635278	3635354	.	+	.	Parent=Os11t0173500-01
Chr11	irgsp1_rep	CDS	3635355	3638002	.	+	0	Parent=Os11t0173500-01
Chr11	irgsp1_rep	mRNA	3633306	3634324	.	+	.	ID=Os11t0173500-02;Name=Os11t0173500-02;Locus_id=Os11g0173500;CGSNL Gene Symbol=HWI1;CGSNL Gene Name=HYBRID WEAKNESS I 1;Oryzabase Gene Symbol Synonym(s)=25L1;Oryzabase Gene Name Synonym(s)=LOC_Os11g07225-like 1;Note=Hypothetical conserved gene.;Transcript_evidence=AK111017 (DDBJ%2C Best hit);ORF_evidence=Q53PD2 (UniProt);NIAS_FLcDNA=002-174-G06;Oryzabase=19627;Expression=AK111017;TENOR=Os11t0173500-02;KEGG=Os11t0173500-02
Chr11	irgsp1_rep	five_prime_UTR	3633306	3633355	.	+	.	Parent=Os11t0173500-02
Chr11	irgsp1_rep	CDS	3633356	3633595	.	+	0	Parent=Os11t0173500-02
Chr11	irgsp1_rep	CDS	3634048	3634239	.	+	0	Parent=Os11t0173500-02
Chr11	irgsp1_rep	three_prime_UTR	3634240	3634324	.	+	.	Parent=Os11t0173500-02
Chr11	irgsp1_rep	mRNA	3634792	3638645	.	+	.	ID=Os11t0173500-03;Name=Os11t0173500-03;Locus_id=Os11g0173500;CGSNL Gene Symbol=HWI1;CGSNL Gene Name=HYBRID WEAKNESS I 1;Oryzabase Gene Symbol Synonym(s)=25L1;Oryzabase Gene Name Synonym(s)=LOC_Os11g07225-like 1;Note=Leucine-rich repeat%2C typical subtype domain containing protein.;Transcript_evidence=AK111677 (DDBJ%2C Best hit);ORF_evidence=Q53PC9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J013160M10;Oryzabase=19627;Expression=AK111677;TENOR=Os11t0173500-03;KEGG=Os11t0173500-03
Chr11	irgsp1_rep	five_prime_UTR	3634792	3635018	.	+	.	Parent=Os11t0173500-03
Chr11	irgsp1_rep	five_prime_UTR	3635103	3635209	.	+	.	Parent=Os11t0173500-03
Chr11	irgsp1_rep	five_prime_UTR	3635309	3635354	.	+	.	Parent=Os11t0173500-03
Chr11	irgsp1_rep	CDS	3635355	3638025	.	+	0	Parent=Os11t0173500-03
Chr11	irgsp1_rep	CDS	3638129	3638496	.	+	2	Parent=Os11t0173500-03
Chr11	irgsp1_rep	three_prime_UTR	3638497	3638645	.	+	.	Parent=Os11t0173500-03
Chr11	irgsp1_rep	mRNA	3640348	3644132	.	+	.	ID=Os11t0173550-01;Name=Os11t0173550-01;Locus_id=Os11g0173550;CGSNL Gene Symbol=RLCK314;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 314;Oryzabase Gene Symbol Synonym(s)=OsRLCK314%2C 25L2;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 314%2C LOC_Os11g07225-like 2;Note=Hypothetical conserved gene.;Transcript_evidence=AK287425 (DDBJ%2C Best hit);ORF_evidence=F2E3T7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591);NIAS_FLcDNA=J043007J07;Oryzabase=18987;TENOR=Os11t0173550-01;KEGG=Os11t0173550-01
Chr11	irgsp1_rep	five_prime_UTR	3640348	3640444	.	+	.	Parent=Os11t0173550-01
Chr11	irgsp1_rep	five_prime_UTR	3640647	3640755	.	+	.	Parent=Os11t0173550-01
Chr11	irgsp1_rep	five_prime_UTR	3640848	3641059	.	+	.	Parent=Os11t0173550-01
Chr11	irgsp1_rep	CDS	3641060	3642445	.	+	0	Parent=Os11t0173550-01
Chr11	irgsp1_rep	three_prime_UTR	3642446	3643539	.	+	.	Parent=Os11t0173550-01
Chr11	irgsp1_rep	three_prime_UTR	3643642	3644132	.	+	.	Parent=Os11t0173550-01
Chr11	irgsp1_rep	mRNA	3649441	3653629	.	-	.	ID=Os11t0173600-01;Name=Os11t0173600-01;Locus_id=Os11g0173600;Note=Non-protein coding transcript.;Transcript_evidence=AK101304 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J033033M01;TENOR=Os11t0173600-01
Chr11	irgsp1_rep	exon	3653318	3653629	.	-	.	Parent=Os11t0173600-01
Chr11	irgsp1_rep	exon	3649441	3653004	.	-	.	Parent=Os11t0173600-01
Chr11	irgsp1_rep	mRNA	3652355	3652735	.	+	.	ID=Os11t0173750-00;Name=Os11t0173750-00;Locus_id=Os11g0173750;Note=Similar to Leucine Rich Repeat family protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q53PD0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009);TENOR=Os11t0173750-00
Chr11	irgsp1_rep	CDS	3652355	3652735	.	+	0	Parent=Os11t0173750-00
Chr11	irgsp1_rep	mRNA	3656726	3661466	.	+	.	ID=Os11t0173800-01;Name=Os11t0173800-01;Locus_id=Os11g0173800;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK318530 (DDBJ%2C Best hit);ORF_evidence=Q53PC9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J065166G04;TENOR=Os11t0173800-01;KEGG=Os11t0173800-01
Chr11	irgsp1_rep	five_prime_UTR	3656726	3658094	.	+	.	Parent=Os11t0173800-01
Chr11	irgsp1_rep	CDS	3658095	3660768	.	+	0	Parent=Os11t0173800-01
Chr11	irgsp1_rep	CDS	3660888	3661255	.	+	2	Parent=Os11t0173800-01
Chr11	irgsp1_rep	three_prime_UTR	3661256	3661466	.	+	.	Parent=Os11t0173800-01
Chr11	irgsp1_rep	mRNA	3664612	3667770	.	+	.	ID=Os11t0173900-00;Name=Os11t0173900-00;Locus_id=Os11g0173900;Note=Similar to Leucine Rich Repeat family protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q53PC8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os11t0173900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	3664612	3667288	.	+	0	Parent=Os11t0173900-00
Chr11	irgsp1_rep	CDS	3667406	3667770	.	+	2	Parent=Os11t0173900-00
Chr11	irgsp1_rep	mRNA	3668116	3673502	.	-	.	ID=Os11t0174000-01;Name=Os11t0174000-01;Locus_id=Os11g0174000;Note=Coatomer%2C beta subunit domain containing protein.;Transcript_evidence=AK069716 (DDBJ%2C Best hit);ORF_evidence=Q53PC6 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: cytoplasm (GO:0005737),Cellular Component: membrane coat (GO:0030117),Cellular Component: COPI vesicle coat (GO:0030126),Molecular Function: structural molecule activity (GO:0005198),Molecular Function: binding (GO:0005488);InterPro=Clathrin/coatomer adaptor%2C adaptin-like%2C N-terminal (IPR002553),Coatomer%2C beta subunit%2C C-terminal (IPR011710),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),Coatomer%2C beta subunit (IPR016460);NIAS_FLcDNA=J023030F21;TENOR=Os11t0174000-01
Chr11	irgsp1_rep	five_prime_UTR	3673360	3673502	.	-	.	Parent=Os11t0174000-01
Chr11	irgsp1_rep	CDS	3671302	3673359	.	-	0	Parent=Os11t0174000-01
Chr11	irgsp1_rep	CDS	3669908	3670417	.	-	0	Parent=Os11t0174000-01
Chr11	irgsp1_rep	CDS	3669443	3669528	.	-	0	Parent=Os11t0174000-01
Chr11	irgsp1_rep	CDS	3668473	3668680	.	-	1	Parent=Os11t0174000-01
Chr11	irgsp1_rep	three_prime_UTR	3668116	3668472	.	-	.	Parent=Os11t0174000-01
Chr11	irgsp1_rep	mRNA	3671771	3673435	.	-	.	ID=Os11t0174000-02;Name=Os11t0174000-02;Locus_id=Os11g0174000;Note=Similar to Adaptin N terminal region family protein%2C expressed.;Transcript_evidence=AK072825 (DDBJ%2C Best hit);ORF_evidence=Q53PC6 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: cytoplasm (GO:0005737),Cellular Component: membrane coat (GO:0030117),Molecular Function: binding (GO:0005488);InterPro=Clathrin/coatomer adaptor%2C adaptin-like%2C N-terminal (IPR002553),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),Coatomer%2C beta subunit (IPR016460);NIAS_FLcDNA=J023136B14;TENOR=Os11t0174000-02
Chr11	irgsp1_rep	five_prime_UTR	3673360	3673435	.	-	.	Parent=Os11t0174000-02
Chr11	irgsp1_rep	CDS	3671771	3673359	.	-	0	Parent=Os11t0174000-02
Chr11	irgsp1_rep	mRNA	3668116	3673471	.	-	.	ID=Os11t0174000-03;Name=Os11t0174000-03;Locus_id=Os11g0174000;Note=Coatomer%2C beta subunit domain containing protein.;Transcript_evidence=AK120713 (DDBJ%2C Best hit),AK120719 (DDBJ%2C Best hit);ORF_evidence=Q53PC6 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: cytoplasm (GO:0005737),Cellular Component: membrane coat (GO:0030117),Cellular Component: COPI vesicle coat (GO:0030126),Molecular Function: structural molecule activity (GO:0005198),Molecular Function: binding (GO:0005488);InterPro=Clathrin/coatomer adaptor%2C adaptin-like%2C N-terminal (IPR002553),Coatomer%2C beta subunit%2C C-terminal (IPR011710),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),Coatomer%2C beta subunit (IPR016460);NIAS_FLcDNA=J023002A09,J023002G07;TENOR=Os11t0174000-03
Chr11	irgsp1_rep	five_prime_UTR	3673360	3673471	.	-	.	Parent=Os11t0174000-03
Chr11	irgsp1_rep	CDS	3671302	3673359	.	-	0	Parent=Os11t0174000-03
Chr11	irgsp1_rep	CDS	3669908	3670417	.	-	0	Parent=Os11t0174000-03
Chr11	irgsp1_rep	CDS	3669443	3669528	.	-	0	Parent=Os11t0174000-03
Chr11	irgsp1_rep	CDS	3668473	3668680	.	-	1	Parent=Os11t0174000-03
Chr11	irgsp1_rep	three_prime_UTR	3668116	3668472	.	-	.	Parent=Os11t0174000-03
Chr11	irgsp1_rep	mRNA	3668116	3671881	.	-	.	ID=Os11t0174000-04;Name=Os11t0174000-04;Locus_id=Os11g0174000;Note=Similar to Adaptin N terminal region family protein%2C expressed.;Transcript_evidence=AK061958 (DDBJ%2C Best hit);ORF_evidence=Q53PC6 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: cytoplasm (GO:0005737),Cellular Component: COPI vesicle coat (GO:0030126),Molecular Function: structural molecule activity (GO:0005198);InterPro=Coatomer%2C beta subunit%2C C-terminal (IPR011710),Coatomer%2C beta subunit (IPR016460);NIAS_FLcDNA=001-042-F11;TENOR=Os11t0174000-04
Chr11	irgsp1_rep	five_prime_UTR	3671881	3671881	.	-	.	Parent=Os11t0174000-04
Chr11	irgsp1_rep	CDS	3671302	3671880	.	-	0	Parent=Os11t0174000-04
Chr11	irgsp1_rep	CDS	3669908	3670417	.	-	0	Parent=Os11t0174000-04
Chr11	irgsp1_rep	CDS	3669443	3669528	.	-	0	Parent=Os11t0174000-04
Chr11	irgsp1_rep	CDS	3668473	3668680	.	-	1	Parent=Os11t0174000-04
Chr11	irgsp1_rep	three_prime_UTR	3668116	3668472	.	-	.	Parent=Os11t0174000-04
Chr11	irgsp1_rep	mRNA	3721900	3723603	.	-	.	ID=Os11t0175000-01;Name=Os11t0175000-01;Locus_id=Os11g0175000;Note=Domain of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK109815 (DDBJ%2C Best hit);ORF_evidence=B9G9N3 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=002-147-H07;Expression=AK109815;TENOR=Os11t0175000-01;KEGG=Os11t0175000-01
Chr11	irgsp1_rep	five_prime_UTR	3723416	3723603	.	-	.	Parent=Os11t0175000-01
Chr11	irgsp1_rep	CDS	3722612	3723415	.	-	0	Parent=Os11t0175000-01
Chr11	irgsp1_rep	three_prime_UTR	3721900	3722611	.	-	.	Parent=Os11t0175000-01
Chr11	irgsp1_rep	mRNA	3737109	3739034	.	-	.	ID=Os11t0175300-01;Name=Os11t0175300-01;Locus_id=Os11g0175300;Note=Domain of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK072817 (DDBJ%2C Best hit);ORF_evidence=B9G9N4 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=J023141L10;TENOR=Os11t0175300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	3738957	3739034	.	-	.	Parent=Os11t0175300-01
Chr11	irgsp1_rep	CDS	3737706	3738956	.	-	0	Parent=Os11t0175300-01
Chr11	irgsp1_rep	three_prime_UTR	3737109	3737705	.	-	.	Parent=Os11t0175300-01
Chr11	irgsp1_rep	mRNA	3739630	3743522	.	-	.	ID=Os11t0175400-01;Name=Os11t0175400-01;Locus_id=Os11g0175400;CGSNL Gene Symbol=NIN6;CGSNL Gene Name=NEUTRAL/ALKALINE INVERTASE 6;Oryzabase Gene Symbol Synonym(s)=OsNIN6;Oryzabase Gene Name Synonym(s)=neutral/alkaline invertase 6;Note=Plant neutral invertase family protein.;Transcript_evidence=AK070884 (DDBJ%2C Best hit);ORF_evidence=A7DVT6 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Plant neutral invertase (IPR006937),Six-hairpin glycosidase-like (IPR008928);NIAS_FLcDNA=J023068M15;Oryzabase=14671;Expression=AK070884;TENOR=Os11t0175400-01;KEGG=Os11t0175400-01
Chr11	irgsp1_rep	five_prime_UTR	3743300	3743522	.	-	.	Parent=Os11t0175400-01
Chr11	irgsp1_rep	five_prime_UTR	3743088	3743189	.	-	.	Parent=Os11t0175400-01
Chr11	irgsp1_rep	CDS	3742728	3743087	.	-	0	Parent=Os11t0175400-01
Chr11	irgsp1_rep	CDS	3741811	3742242	.	-	0	Parent=Os11t0175400-01
Chr11	irgsp1_rep	CDS	3740811	3741369	.	-	0	Parent=Os11t0175400-01
Chr11	irgsp1_rep	CDS	3739978	3740273	.	-	2	Parent=Os11t0175400-01
Chr11	irgsp1_rep	three_prime_UTR	3739630	3739977	.	-	.	Parent=Os11t0175400-01
Chr11	irgsp1_rep	mRNA	3740060	3745771	.	+	.	ID=Os11t0175450-00;Name=Os11t0175450-00;Locus_id=Os11g0175450;Note=Hypothetical protein.;Transcript_evidence=tplb0038i24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0175450-00
Chr11	irgsp1_rep	five_prime_UTR	3740060	3740254	.	+	.	Parent=Os11t0175450-00
Chr11	irgsp1_rep	five_prime_UTR	3740791	3741368	.	+	.	Parent=Os11t0175450-00
Chr11	irgsp1_rep	five_prime_UTR	3741810	3742186	.	+	.	Parent=Os11t0175450-00
Chr11	irgsp1_rep	five_prime_UTR	3742680	3742757	.	+	.	Parent=Os11t0175450-00
Chr11	irgsp1_rep	CDS	3742758	3742835	.	+	0	Parent=Os11t0175450-00
Chr11	irgsp1_rep	CDS	3745482	3745682	.	+	0	Parent=Os11t0175450-00
Chr11	irgsp1_rep	three_prime_UTR	3745683	3745771	.	+	.	Parent=Os11t0175450-00
Chr11	irgsp1_rep	mRNA	3749274	3755132	.	+	.	ID=Os11t0175500-01;Name=Os11t0175500-01;Locus_id=Os11g0175500;RAP-DB Gene Symbol Synonym(s)=OsSADR1;RAP-DB Gene Name Synonym(s)="Oryza sativa salt%2C ABA and drought stress-induced RING finger protein 1";CGSNL Gene Symbol=SADR1;CGSNL Gene Name=SALT%2C ABA AND DROUGHT STRESS-INDUCED RING FINGER PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsRFP%2C OsSADR1;Oryzabase Gene Name Synonym(s)=RING finger protein%2C "Salt-%2C ABA- and Drought-Induced RING Finger Protein 1"%2C "salt%2C ABA and drought stress-induced RING finger protein 1";Note=RING finger E3 ligase%2C Negative regulator in response to salinity;Transcript_evidence=AK101592;ORF_evidence=Q53PH3;GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J033051D17;Manual Curation=February 16%2C 2018;Literature_PMID=29361060;Oryzabase=21170;Expression=AK101592;TENOR=Os11t0175500-01;KEGG=Os11t0175500-01;Subcellular location=cytosol (GO:0005829), nucleus (GO:0005634)
Chr11	irgsp1_rep	five_prime_UTR	3749274	3749333	.	+	.	Parent=Os11t0175500-01
Chr11	irgsp1_rep	CDS	3749334	3749415	.	+	0	Parent=Os11t0175500-01
Chr11	irgsp1_rep	CDS	3749535	3749697	.	+	2	Parent=Os11t0175500-01
Chr11	irgsp1_rep	CDS	3750435	3750529	.	+	1	Parent=Os11t0175500-01
Chr11	irgsp1_rep	CDS	3750875	3750936	.	+	2	Parent=Os11t0175500-01
Chr11	irgsp1_rep	CDS	3751018	3751109	.	+	0	Parent=Os11t0175500-01
Chr11	irgsp1_rep	CDS	3751189	3751324	.	+	1	Parent=Os11t0175500-01
Chr11	irgsp1_rep	CDS	3751420	3751506	.	+	0	Parent=Os11t0175500-01
Chr11	irgsp1_rep	CDS	3752571	3752673	.	+	0	Parent=Os11t0175500-01
Chr11	irgsp1_rep	CDS	3752752	3752859	.	+	2	Parent=Os11t0175500-01
Chr11	irgsp1_rep	CDS	3753218	3753318	.	+	2	Parent=Os11t0175500-01
Chr11	irgsp1_rep	CDS	3753439	3753504	.	+	0	Parent=Os11t0175500-01
Chr11	irgsp1_rep	CDS	3753608	3753695	.	+	0	Parent=Os11t0175500-01
Chr11	irgsp1_rep	CDS	3754086	3754146	.	+	2	Parent=Os11t0175500-01
Chr11	irgsp1_rep	CDS	3754228	3754291	.	+	1	Parent=Os11t0175500-01
Chr11	irgsp1_rep	CDS	3754821	3754949	.	+	0	Parent=Os11t0175500-01
Chr11	irgsp1_rep	three_prime_UTR	3754950	3755132	.	+	.	Parent=Os11t0175500-01
Chr11	irgsp1_rep	mRNA	3749292	3755192	.	+	.	ID=Os11t0175500-02;Name=Os11t0175500-02;Locus_id=Os11g0175500;CGSNL Gene Symbol=SADR1;CGSNL Gene Name=SALT%2C ABA AND DROUGHT STRESS-INDUCED RING FINGER PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsRFP%2C OsSADR1;Oryzabase Gene Name Synonym(s)=RING finger protein%2C "Salt-%2C ABA- and Drought-Induced RING Finger Protein 1"%2C "salt%2C ABA and drought stress-induced RING finger protein 1";Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK064320 (DDBJ%2C Best hit);ORF_evidence=B9G9N6 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=002-107-D08;Oryzabase=21170;Expression=AK064320;TENOR=Os11t0175500-02;KEGG=Os11t0175500-02
Chr11	irgsp1_rep	five_prime_UTR	3749292	3749333	.	+	.	Parent=Os11t0175500-02
Chr11	irgsp1_rep	CDS	3749334	3749415	.	+	0	Parent=Os11t0175500-02
Chr11	irgsp1_rep	CDS	3749535	3749697	.	+	2	Parent=Os11t0175500-02
Chr11	irgsp1_rep	CDS	3750435	3750529	.	+	1	Parent=Os11t0175500-02
Chr11	irgsp1_rep	CDS	3750875	3750936	.	+	2	Parent=Os11t0175500-02
Chr11	irgsp1_rep	CDS	3751018	3751109	.	+	0	Parent=Os11t0175500-02
Chr11	irgsp1_rep	CDS	3751189	3751324	.	+	1	Parent=Os11t0175500-02
Chr11	irgsp1_rep	CDS	3751420	3751506	.	+	0	Parent=Os11t0175500-02
Chr11	irgsp1_rep	CDS	3752032	3752121	.	+	0	Parent=Os11t0175500-02
Chr11	irgsp1_rep	CDS	3752571	3752673	.	+	0	Parent=Os11t0175500-02
Chr11	irgsp1_rep	CDS	3752752	3752859	.	+	2	Parent=Os11t0175500-02
Chr11	irgsp1_rep	CDS	3753218	3753318	.	+	2	Parent=Os11t0175500-02
Chr11	irgsp1_rep	CDS	3753439	3753504	.	+	0	Parent=Os11t0175500-02
Chr11	irgsp1_rep	CDS	3753608	3753695	.	+	0	Parent=Os11t0175500-02
Chr11	irgsp1_rep	CDS	3754086	3754146	.	+	2	Parent=Os11t0175500-02
Chr11	irgsp1_rep	CDS	3754228	3754291	.	+	1	Parent=Os11t0175500-02
Chr11	irgsp1_rep	CDS	3754821	3754949	.	+	0	Parent=Os11t0175500-02
Chr11	irgsp1_rep	three_prime_UTR	3754950	3755192	.	+	.	Parent=Os11t0175500-02
Chr11	irgsp1_rep	mRNA	3758793	3760416	.	-	.	ID=Os11t0175700-00;Name=Os11t0175700-00;Locus_id=Os11g0175700;CGSNL Gene Symbol=PCF3;CGSNL Gene Name=PROLIFERATING CELL FACTOR 3;Oryzabase Gene Symbol Synonym(s)=OsPCF3;Note=Similar to Transcription factor PCF3.;Transcript_evidence=AB071804 (DDBJ%2C Best hit);ORF_evidence=Q53PH2 (UniProt);InterPro=Transcription factor%2C TCP (IPR005333),Transcription factor TCP subgroup (IPR017887);Oryzabase=11699;TENOR=Os11t0175700-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	3760376	3760416	.	-	.	Parent=Os11t0175700-00
Chr11	irgsp1_rep	CDS	3759155	3760375	.	-	0	Parent=Os11t0175700-00
Chr11	irgsp1_rep	three_prime_UTR	3758793	3759154	.	-	.	Parent=Os11t0175700-00
Chr11	irgsp1_rep	mRNA	3776852	3778870	.	-	.	ID=Os11t0175800-01;Name=Os11t0175800-01;Locus_id=Os11g0175800;Note=Hypothetical conserved gene.;Transcript_evidence=AK103629 (DDBJ%2C Best hit);ORF_evidence=B9GBI8 (UniProt);NIAS_FLcDNA=J033133P11;Expression=AK103629;TENOR=Os11t0175800-01;KEGG=Os11t0175800-01
Chr11	irgsp1_rep	CDS	3778720	3778870	.	-	0	Parent=Os11t0175800-01
Chr11	irgsp1_rep	CDS	3778358	3778467	.	-	2	Parent=Os11t0175800-01
Chr11	irgsp1_rep	three_prime_UTR	3778214	3778357	.	-	.	Parent=Os11t0175800-01
Chr11	irgsp1_rep	three_prime_UTR	3777626	3777682	.	-	.	Parent=Os11t0175800-01
Chr11	irgsp1_rep	three_prime_UTR	3776852	3777360	.	-	.	Parent=Os11t0175800-01
Chr11	irgsp1_rep	mRNA	3782692	3787314	.	-	.	ID=Os11t0175900-01;Name=Os11t0175900-01;Locus_id=Os11g0175900;Note=Similar to TPLATE%3B binding.;Transcript_evidence=AK068683 (DDBJ%2C Best hit);ORF_evidence=NP_186827.2 (RefSeq);NIAS_FLcDNA=J013160N01;Expression=AK068683;TENOR=Os11t0175900-01;KEGG=Os11t0175900-01
Chr11	irgsp1_rep	five_prime_UTR	3787313	3787314	.	-	.	Parent=Os11t0175900-01
Chr11	irgsp1_rep	CDS	3786719	3787312	.	-	0	Parent=Os11t0175900-01
Chr11	irgsp1_rep	CDS	3785885	3786246	.	-	0	Parent=Os11t0175900-01
Chr11	irgsp1_rep	CDS	3785424	3785724	.	-	1	Parent=Os11t0175900-01
Chr11	irgsp1_rep	CDS	3784872	3784994	.	-	0	Parent=Os11t0175900-01
Chr11	irgsp1_rep	CDS	3783429	3783881	.	-	0	Parent=Os11t0175900-01
Chr11	irgsp1_rep	CDS	3782835	3783335	.	-	0	Parent=Os11t0175900-01
Chr11	irgsp1_rep	three_prime_UTR	3782692	3782834	.	-	.	Parent=Os11t0175900-01
Chr11	irgsp1_rep	mRNA	3789341	3793813	.	+	.	ID=Os11t0176000-01;Name=Os11t0176000-01;Locus_id=Os11g0176000;Oryzabase Gene Symbol Synonym(s)=OsWD40-183%2C OsSTA251;Note=Similar to nucleotide binding protein.;Transcript_evidence=AK105568 (DDBJ%2C Best hit);ORF_evidence=NP_001147030.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=001-128-C10;Oryzabase=10864;TENOR=Os11t0176000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	3789341	3789342	.	+	.	Parent=Os11t0176000-01
Chr11	irgsp1_rep	CDS	3789343	3789441	.	+	0	Parent=Os11t0176000-01
Chr11	irgsp1_rep	CDS	3790012	3790281	.	+	0	Parent=Os11t0176000-01
Chr11	irgsp1_rep	CDS	3790368	3790479	.	+	0	Parent=Os11t0176000-01
Chr11	irgsp1_rep	CDS	3790580	3790658	.	+	2	Parent=Os11t0176000-01
Chr11	irgsp1_rep	CDS	3790796	3790886	.	+	1	Parent=Os11t0176000-01
Chr11	irgsp1_rep	CDS	3790985	3791068	.	+	0	Parent=Os11t0176000-01
Chr11	irgsp1_rep	CDS	3791730	3791826	.	+	0	Parent=Os11t0176000-01
Chr11	irgsp1_rep	CDS	3791926	3792013	.	+	2	Parent=Os11t0176000-01
Chr11	irgsp1_rep	CDS	3792443	3792548	.	+	1	Parent=Os11t0176000-01
Chr11	irgsp1_rep	CDS	3792646	3792840	.	+	0	Parent=Os11t0176000-01
Chr11	irgsp1_rep	CDS	3793315	3793761	.	+	0	Parent=Os11t0176000-01
Chr11	irgsp1_rep	three_prime_UTR	3793762	3793813	.	+	.	Parent=Os11t0176000-01
Chr11	irgsp1_rep	mRNA	3795981	3801061	.	+	.	ID=Os11t0176100-01;Name=Os11t0176100-01;Locus_id=Os11g0176100;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK067921 (DDBJ%2C Best hit);ORF_evidence=B8BJE1 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013124G12;Expression=AK067921;TENOR=Os11t0176100-01;KEGG=Os11t0176100-01
Chr11	irgsp1_rep	five_prime_UTR	3795981	3796164	.	+	.	Parent=Os11t0176100-01
Chr11	irgsp1_rep	CDS	3796165	3796210	.	+	0	Parent=Os11t0176100-01
Chr11	irgsp1_rep	CDS	3796597	3796675	.	+	2	Parent=Os11t0176100-01
Chr11	irgsp1_rep	CDS	3797134	3797308	.	+	1	Parent=Os11t0176100-01
Chr11	irgsp1_rep	CDS	3798430	3798463	.	+	0	Parent=Os11t0176100-01
Chr11	irgsp1_rep	CDS	3798577	3798815	.	+	2	Parent=Os11t0176100-01
Chr11	irgsp1_rep	CDS	3798908	3798985	.	+	0	Parent=Os11t0176100-01
Chr11	irgsp1_rep	CDS	3799209	3799244	.	+	0	Parent=Os11t0176100-01
Chr11	irgsp1_rep	CDS	3799336	3799758	.	+	0	Parent=Os11t0176100-01
Chr11	irgsp1_rep	CDS	3800018	3800263	.	+	0	Parent=Os11t0176100-01
Chr11	irgsp1_rep	CDS	3800488	3800619	.	+	0	Parent=Os11t0176100-01
Chr11	irgsp1_rep	three_prime_UTR	3800620	3801061	.	+	.	Parent=Os11t0176100-01
Chr11	irgsp1_rep	mRNA	3801540	3808587	.	-	.	ID=Os11t0176200-01;Name=Os11t0176200-01;Locus_id=Os11g0176200;Oryzabase Gene Symbol Synonym(s)=OsDSHCT;Oryzabase Gene Name Synonym(s)=DOB1/SK12/helY-like DEAD-box Helicase;Note=Similar to HUA enhancer 2.;Transcript_evidence=AK121851 (DDBJ%2C Best hit),AK122056 (DDBJ%2C Best hit);ORF_evidence=XP_002883745.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026),Molecular Function: hydrolase activity%2C acting on acid anhydrides (GO:0016817),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides (GO:0016818);InterPro=Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DSH%2C C-terminal (IPR012961),DEAD-like helicase (IPR014001),RNA helicase%2C ATP-dependent%2C SK12/DOB1 (IPR016438);NIAS_FLcDNA=J033101M14,J033114L01;Oryzabase=11597;TENOR=Os11t0176200-01
Chr11	irgsp1_rep	five_prime_UTR	3808412	3808587	.	-	.	Parent=Os11t0176200-01
Chr11	irgsp1_rep	CDS	3807416	3808411	.	-	0	Parent=Os11t0176200-01
Chr11	irgsp1_rep	CDS	3806850	3807164	.	-	0	Parent=Os11t0176200-01
Chr11	irgsp1_rep	CDS	3806549	3806653	.	-	0	Parent=Os11t0176200-01
Chr11	irgsp1_rep	CDS	3806370	3806438	.	-	0	Parent=Os11t0176200-01
Chr11	irgsp1_rep	CDS	3805515	3805682	.	-	0	Parent=Os11t0176200-01
Chr11	irgsp1_rep	CDS	3805355	3805426	.	-	0	Parent=Os11t0176200-01
Chr11	irgsp1_rep	CDS	3805154	3805270	.	-	0	Parent=Os11t0176200-01
Chr11	irgsp1_rep	CDS	3804752	3804973	.	-	0	Parent=Os11t0176200-01
Chr11	irgsp1_rep	CDS	3804458	3804616	.	-	0	Parent=Os11t0176200-01
Chr11	irgsp1_rep	CDS	3803892	3803981	.	-	0	Parent=Os11t0176200-01
Chr11	irgsp1_rep	CDS	3803712	3803807	.	-	0	Parent=Os11t0176200-01
Chr11	irgsp1_rep	CDS	3803488	3803641	.	-	0	Parent=Os11t0176200-01
Chr11	irgsp1_rep	CDS	3802975	3803123	.	-	2	Parent=Os11t0176200-01
Chr11	irgsp1_rep	CDS	3802801	3802896	.	-	0	Parent=Os11t0176200-01
Chr11	irgsp1_rep	CDS	3802531	3802623	.	-	0	Parent=Os11t0176200-01
Chr11	irgsp1_rep	CDS	3801797	3801907	.	-	0	Parent=Os11t0176200-01
Chr11	irgsp1_rep	three_prime_UTR	3801540	3801796	.	-	.	Parent=Os11t0176200-01
Chr11	irgsp1_rep	mRNA	3802973	3807166	.	-	.	ID=Os11t0176200-02;Name=Os11t0176200-02;Locus_id=Os11g0176200;Oryzabase Gene Symbol Synonym(s)=OsDSHCT;Oryzabase Gene Name Synonym(s)=DOB1/SK12/helY-like DEAD-box Helicase;Note=Similar to predicted protein.;Transcript_evidence=AK108748 (DDBJ%2C Best hit);ORF_evidence=XP_002883745.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides (GO:0016818);InterPro=Helicase%2C C-terminal (IPR001650),DSH%2C C-terminal (IPR012961);NIAS_FLcDNA=002-150-F02;Oryzabase=11597;TENOR=Os11t0176200-02
Chr11	irgsp1_rep	five_prime_UTR	3807165	3807166	.	-	.	Parent=Os11t0176200-02
Chr11	irgsp1_rep	CDS	3806850	3807164	.	-	0	Parent=Os11t0176200-02
Chr11	irgsp1_rep	CDS	3806549	3806653	.	-	0	Parent=Os11t0176200-02
Chr11	irgsp1_rep	CDS	3806370	3806438	.	-	0	Parent=Os11t0176200-02
Chr11	irgsp1_rep	CDS	3805515	3805682	.	-	0	Parent=Os11t0176200-02
Chr11	irgsp1_rep	CDS	3805355	3805426	.	-	0	Parent=Os11t0176200-02
Chr11	irgsp1_rep	CDS	3805154	3805270	.	-	0	Parent=Os11t0176200-02
Chr11	irgsp1_rep	CDS	3804752	3804973	.	-	0	Parent=Os11t0176200-02
Chr11	irgsp1_rep	CDS	3804458	3804616	.	-	0	Parent=Os11t0176200-02
Chr11	irgsp1_rep	CDS	3803892	3803981	.	-	0	Parent=Os11t0176200-02
Chr11	irgsp1_rep	CDS	3803712	3803807	.	-	0	Parent=Os11t0176200-02
Chr11	irgsp1_rep	CDS	3803488	3803641	.	-	0	Parent=Os11t0176200-02
Chr11	irgsp1_rep	CDS	3802973	3803123	.	-	2	Parent=Os11t0176200-02
Chr11	irgsp1_rep	mRNA	3801750	3803538	.	+	.	ID=Os11t0176250-00;Name=Os11t0176250-00;Locus_id=Os11g0176250;Note=Non-protein coding transcript.;Transcript_evidence=BT019066 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0176250-00
Chr11	irgsp1_rep	exon	3801750	3801926	.	+	.	Parent=Os11t0176250-00
Chr11	irgsp1_rep	exon	3802552	3802615	.	+	.	Parent=Os11t0176250-00
Chr11	irgsp1_rep	exon	3802790	3802892	.	+	.	Parent=Os11t0176250-00
Chr11	irgsp1_rep	exon	3802962	3803119	.	+	.	Parent=Os11t0176250-00
Chr11	irgsp1_rep	exon	3803480	3803538	.	+	.	Parent=Os11t0176250-00
Chr11	irgsp1_rep	mRNA	3808917	3816699	.	+	.	ID=Os11t0176300-01;Name=Os11t0176300-01;Locus_id=Os11g0176300;Oryzabase Gene Symbol Synonym(s)=OsSTA252;Note=GDP-fucose protein O-fucosyltransferase domain containing protein.;Transcript_evidence=AK288044 (DDBJ%2C Best hit);ORF_evidence=B8BJE3 (UniProt);InterPro=GDP-fucose protein O-fucosyltransferase (IPR019378);NIAS_FLcDNA=J075145N05;Oryzabase=19519;TENOR=Os11t0176300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	3808917	3809021	.	+	.	Parent=Os11t0176300-01
Chr11	irgsp1_rep	CDS	3809022	3809198	.	+	0	Parent=Os11t0176300-01
Chr11	irgsp1_rep	CDS	3809601	3809673	.	+	0	Parent=Os11t0176300-01
Chr11	irgsp1_rep	CDS	3809862	3809929	.	+	2	Parent=Os11t0176300-01
Chr11	irgsp1_rep	CDS	3810356	3810444	.	+	0	Parent=Os11t0176300-01
Chr11	irgsp1_rep	CDS	3811146	3811343	.	+	1	Parent=Os11t0176300-01
Chr11	irgsp1_rep	CDS	3811441	3811645	.	+	1	Parent=Os11t0176300-01
Chr11	irgsp1_rep	CDS	3811731	3811932	.	+	0	Parent=Os11t0176300-01
Chr11	irgsp1_rep	CDS	3812268	3812332	.	+	2	Parent=Os11t0176300-01
Chr11	irgsp1_rep	three_prime_UTR	3812333	3812435	.	+	.	Parent=Os11t0176300-01
Chr11	irgsp1_rep	three_prime_UTR	3812600	3812790	.	+	.	Parent=Os11t0176300-01
Chr11	irgsp1_rep	three_prime_UTR	3816335	3816699	.	+	.	Parent=Os11t0176300-01
Chr11	irgsp1_rep	mRNA	3834294	3834818	.	-	.	ID=Os11t0177200-01;Name=Os11t0177200-01;Locus_id=Os11g0177200;Note=Conserved hypothetical protein.;Transcript_evidence=AK240948 (DDBJ%2C Best hit);ORF_evidence=NP_001176385.1 (RefSeq);NIAS_FLcDNA=J065043E02;TENOR=Os11t0177200-01;KEGG=Os11t0177200-01
Chr11	irgsp1_rep	five_prime_UTR	3834755	3834818	.	-	.	Parent=Os11t0177200-01
Chr11	irgsp1_rep	CDS	3834395	3834754	.	-	0	Parent=Os11t0177200-01
Chr11	irgsp1_rep	three_prime_UTR	3834294	3834394	.	-	.	Parent=Os11t0177200-01
Chr11	irgsp1_rep	mRNA	3847968	3849051	.	+	.	ID=Os11t0177301-00;Name=Os11t0177301-00;Locus_id=Os11g0177301;Note=Conserved hypothetical protein.;Transcript_evidence=EU969600 (DDBJ);ORF_evidence=B9G9P3 (UniProt);TENOR=Os11t0177301-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	3847968	3848813	.	+	0	Parent=Os11t0177301-00
Chr11	irgsp1_rep	three_prime_UTR	3848814	3849051	.	+	.	Parent=Os11t0177301-00
Chr11	irgsp1_rep	mRNA	3853571	3856790	.	-	.	ID=Os11t0177400-01;Name=Os11t0177400-01;Locus_id=Os11g0177400;CGSNL Gene Symbol=ABCG27;CGSNL Gene Name=ABC TRANSPORTER G FAMILY MEMBER 27;Oryzabase Gene Symbol Synonym(s)=OsABCG27;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 27;Note=Similar to ATPase%2C coupled to transmembrane movement of substances.;Transcript_evidence=AK120669 (DDBJ%2C Best hit);ORF_evidence=NP_001147989.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887);InterPro=ABC transporter-like (IPR003439),ABC-2 type transporter (IPR013525);NIAS_FLcDNA=J013160D04;Oryzabase=12004;TENOR=Os11t0177400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	3856771	3856790	.	-	.	Parent=Os11t0177400-01
Chr11	irgsp1_rep	CDS	3856305	3856770	.	-	0	Parent=Os11t0177400-01
Chr11	irgsp1_rep	CDS	3853902	3854857	.	-	2	Parent=Os11t0177400-01
Chr11	irgsp1_rep	three_prime_UTR	3853571	3853901	.	-	.	Parent=Os11t0177400-01
Chr11	irgsp1_rep	mRNA	3856026	3857151	.	+	.	ID=Os11t0177750-00;Name=Os11t0177750-00;Locus_id=Os11g0177750;Note=Hypothetical gene.;Transcript_evidence=BT084685 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0177750-00;KEGG=Os11t0177750-00
Chr11	irgsp1_rep	five_prime_UTR	3856026	3856483	.	+	.	Parent=Os11t0177750-00
Chr11	irgsp1_rep	CDS	3856484	3857146	.	+	0	Parent=Os11t0177750-00
Chr11	irgsp1_rep	three_prime_UTR	3857147	3857151	.	+	.	Parent=Os11t0177750-00
Chr11	irgsp1_rep	mRNA	3895243	3897091	.	+	.	ID=Os11t0178200-00;Name=Os11t0178200-00;Locus_id=Os11g0178200;Note=Conserved hypothetical protein.;Transcript_evidence=AK110690 (DDBJ%2C Secondary hit);ORF_evidence=B9F8W7 (UniProt);TENOR=Os11t0178200-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	3895243	3895647	.	+	.	Parent=Os11t0178200-00
Chr11	irgsp1_rep	CDS	3895648	3895879	.	+	0	Parent=Os11t0178200-00
Chr11	irgsp1_rep	CDS	3896053	3896186	.	+	2	Parent=Os11t0178200-00
Chr11	irgsp1_rep	three_prime_UTR	3896187	3896208	.	+	.	Parent=Os11t0178200-00
Chr11	irgsp1_rep	three_prime_UTR	3896876	3897091	.	+	.	Parent=Os11t0178200-00
Chr11	irgsp1_rep	mRNA	3916880	3917635	.	-	.	ID=Os11t0178800-01;Name=Os11t0178800-01;Locus_id=Os11g0178800;Note=Plant disease resistance response protein family protein.;Transcript_evidence=AK063148 (DDBJ%2C Best hit);ORF_evidence=B6T8I3 (UniProt);InterPro=Plant disease resistance response protein (IPR004265);NIAS_FLcDNA=001-111-H04;Expression=AK063148;TENOR=Os11t0178800-01;KEGG=Os11t0178800-01
Chr11	irgsp1_rep	five_prime_UTR	3917599	3917635	.	-	.	Parent=Os11t0178800-01
Chr11	irgsp1_rep	CDS	3917068	3917598	.	-	0	Parent=Os11t0178800-01
Chr11	irgsp1_rep	three_prime_UTR	3916880	3917067	.	-	.	Parent=Os11t0178800-01
Chr11	irgsp1_rep	mRNA	3920115	3920826	.	-	.	ID=Os11t0179000-01;Name=Os11t0179000-01;Locus_id=Os11g0179000;Note=Plant disease resistance response protein family protein.;Transcript_evidence=AK062657 (DDBJ%2C Best hit);ORF_evidence=B6T8I3 (UniProt);InterPro=Plant disease resistance response protein (IPR004265);NIAS_FLcDNA=001-105-F01;Expression=AK062657;TENOR=Os11t0179000-01;KEGG=Os11t0179000-01
Chr11	irgsp1_rep	five_prime_UTR	3920780	3920826	.	-	.	Parent=Os11t0179000-01
Chr11	irgsp1_rep	CDS	3920243	3920779	.	-	0	Parent=Os11t0179000-01
Chr11	irgsp1_rep	three_prime_UTR	3920115	3920242	.	-	.	Parent=Os11t0179000-01
Chr11	irgsp1_rep	mRNA	3934039	3934606	.	-	.	ID=Os11t0179400-00;Name=Os11t0179400-00;Locus_id=Os11g0179400;Note=Similar to Dirigent-like protein.;Transcript_evidence=AK368400 (DDBJ);ORF_evidence=Q53NP4 (UniProt);InterPro=Plant disease resistance response protein (IPR004265);TENOR=Os11t0179400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	3934592	3934606	.	-	.	Parent=Os11t0179400-00
Chr11	irgsp1_rep	CDS	3934055	3934591	.	-	0	Parent=Os11t0179400-00
Chr11	irgsp1_rep	three_prime_UTR	3934039	3934054	.	-	.	Parent=Os11t0179400-00
Chr11	irgsp1_rep	mRNA	3952883	3953458	.	+	.	ID=Os11t0179500-00;Name=Os11t0179500-00;Locus_id=Os11g0179500;Note=Similar to dirigent-like protein pDIR9.;Transcript_evidence=tplb0014d23 (Wheat FLcDNA);ORF_evidence=NP_001150515.1 (RefSeq);InterPro=Plant disease resistance response protein (IPR004265);TENOR=Os11t0179500-00
Chr11	irgsp1_rep	five_prime_UTR	3952883	3952909	.	+	.	Parent=Os11t0179500-00
Chr11	irgsp1_rep	CDS	3952910	3953458	.	+	0	Parent=Os11t0179500-00
Chr11	irgsp1_rep	mRNA	3959111	3959687	.	+	.	ID=Os11t0179700-00;Name=Os11t0179700-00;Locus_id=Os11g0179700;Note=Similar to Dirigent-like protein.;Transcript_evidence=tplb0014d23 (Wheat FLcDNA);ORF_evidence=NP_001150515.1 (RefSeq);InterPro=Plant disease resistance response protein (IPR004265);TENOR=Os11t0179700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	3959111	3959132	.	+	.	Parent=Os11t0179700-00
Chr11	irgsp1_rep	CDS	3959133	3959687	.	+	0	Parent=Os11t0179700-00
Chr11	irgsp1_rep	mRNA	3994804	3995784	.	+	.	ID=Os11t0180000-01;Name=Os11t0180000-01;Locus_id=Os11g0180000;Note=Plant disease resistance response protein family protein.;Transcript_evidence=AK060077 (DDBJ%2C Best hit);ORF_evidence=NP_001150515.1 (RefSeq);InterPro=Plant disease resistance response protein (IPR004265);NIAS_FLcDNA=006-306-B12;Expression=AK060077;TENOR=Os11t0180000-01;KEGG=Os11t0180000-01
Chr11	irgsp1_rep	five_prime_UTR	3994804	3994875	.	+	.	Parent=Os11t0180000-01
Chr11	irgsp1_rep	CDS	3994876	3995433	.	+	0	Parent=Os11t0180000-01
Chr11	irgsp1_rep	three_prime_UTR	3995434	3995784	.	+	.	Parent=Os11t0180000-01
Chr11	irgsp1_rep	mRNA	3996813	3999825	.	-	.	ID=Os11t0180100-00;Name=Os11t0180100-00;Locus_id=Os11g0180100;CGSNL Gene Symbol=DUF668-11;CGSNL Gene Name=DUF668 FAMILY MEMBER 11;Oryzabase Gene Symbol Synonym(s)=OsDUF668-11;Oryzabase Gene Name Synonym(s)=DUF668 family member 11;Note=Conserved hypothetical protein.;Transcript_evidence=AK375448 (DDBJ);ORF_evidence=Q53NQ8 (UniProt);Oryzabase=23487;TENOR=Os11t0180100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	3999792	3999825	.	-	.	Parent=Os11t0180100-00
Chr11	irgsp1_rep	CDS	3999534	3999791	.	-	0	Parent=Os11t0180100-00
Chr11	irgsp1_rep	three_prime_UTR	3999525	3999533	.	-	.	Parent=Os11t0180100-00
Chr11	irgsp1_rep	three_prime_UTR	3998651	3998942	.	-	.	Parent=Os11t0180100-00
Chr11	irgsp1_rep	three_prime_UTR	3998449	3998541	.	-	.	Parent=Os11t0180100-00
Chr11	irgsp1_rep	three_prime_UTR	3998253	3998343	.	-	.	Parent=Os11t0180100-00
Chr11	irgsp1_rep	three_prime_UTR	3998061	3998146	.	-	.	Parent=Os11t0180100-00
Chr11	irgsp1_rep	three_prime_UTR	3997884	3997981	.	-	.	Parent=Os11t0180100-00
Chr11	irgsp1_rep	three_prime_UTR	3997614	3997790	.	-	.	Parent=Os11t0180100-00
Chr11	irgsp1_rep	three_prime_UTR	3997336	3997452	.	-	.	Parent=Os11t0180100-00
Chr11	irgsp1_rep	three_prime_UTR	3997126	3997231	.	-	.	Parent=Os11t0180100-00
Chr11	irgsp1_rep	three_prime_UTR	3996813	3996930	.	-	.	Parent=Os11t0180100-00
Chr11	irgsp1_rep	mRNA	4004606	4007457	.	-	.	ID=Os11t0180200-01;Name=Os11t0180200-01;Locus_id=Os11g0180200;Oryzabase Gene Symbol Synonym(s)=OsPTP2%2C PTP2;Oryzabase Gene Name Synonym(s)=protein tyrosine phosphatase 2;Note=Similar to Protein tyrosine phosphatase 1.;Transcript_evidence=AK243006 (DDBJ%2C Best hit);ORF_evidence=Q53NQ7 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Biological Process: dephosphorylation (GO:0016311),Molecular Function: protein tyrosine phosphatase activity (GO:0004725),Molecular Function: phosphatase activity (GO:0016791);InterPro=Protein-tyrosine phosphatase%2C receptor/non-receptor type (IPR000242),Protein-tyrosine/Dual-specificity phosphatase (IPR000387);NIAS_FLcDNA=J090097B08;Oryzabase=20283;TENOR=Os11t0180200-01;KEGG=Os11t0180200-01 (EC:3.1.3.48)
Chr11	irgsp1_rep	five_prime_UTR	4007394	4007457	.	-	.	Parent=Os11t0180200-01
Chr11	irgsp1_rep	CDS	4007389	4007393	.	-	0	Parent=Os11t0180200-01
Chr11	irgsp1_rep	CDS	4005522	4005663	.	-	1	Parent=Os11t0180200-01
Chr11	irgsp1_rep	CDS	4005022	4005093	.	-	0	Parent=Os11t0180200-01
Chr11	irgsp1_rep	three_prime_UTR	4005010	4005021	.	-	.	Parent=Os11t0180200-01
Chr11	irgsp1_rep	three_prime_UTR	4004606	4004868	.	-	.	Parent=Os11t0180200-01
Chr11	irgsp1_rep	mRNA	4004331	4011441	.	-	.	ID=Os11t0180200-02;Name=Os11t0180200-02;Locus_id=Os11g0180200;RAP-DB Gene Symbol Synonym(s)=OsPTP2;RAP-DB Gene Name Synonym(s)=protein tyrosine phosphatase 2;Oryzabase Gene Symbol Synonym(s)=OsPTP2%2C PTP2;Oryzabase Gene Name Synonym(s)=protein tyrosine phosphatase 2;Note=Protein tyrosine phosphatase%2C Response to abiotic stress%2C Defence response;Transcript_evidence=XM_015761753,Inferred from literature;ORF_evidence=Q53NQ7;GO=Biological Process: protein dephosphorylation (GO:0006470),Biological Process: dephosphorylation (GO:0016311),Molecular Function: protein tyrosine phosphatase activity (GO:0004725),Molecular Function: phosphatase activity (GO:0016791);InterPro=Protein-tyrosine phosphatase-like (IPR029021),Tyrosine specific protein phosphatases domain (IPR000387),PTP type protein phosphatase (IPR000242),Protein-tyrosine phosphatase%2C catalytic (IPR003595);Manual Curation=October 8%2C 2020;Literature_PMID=26485146;Oryzabase=20283
Chr11	irgsp1_rep	five_prime_UTR	4010755	4011441	.	-	.	Parent=Os11t0180200-02
Chr11	irgsp1_rep	five_prime_UTR	4009252	4009335	.	-	.	Parent=Os11t0180200-02
Chr11	irgsp1_rep	CDS	4009245	4009251	.	-	0	Parent=Os11t0180200-02
Chr11	irgsp1_rep	CDS	4009072	4009154	.	-	2	Parent=Os11t0180200-02
Chr11	irgsp1_rep	CDS	4008781	4008921	.	-	0	Parent=Os11t0180200-02
Chr11	irgsp1_rep	CDS	4007389	4007514	.	-	0	Parent=Os11t0180200-02
Chr11	irgsp1_rep	CDS	4005746	4005888	.	-	0	Parent=Os11t0180200-02
Chr11	irgsp1_rep	CDS	4005522	4005663	.	-	1	Parent=Os11t0180200-02
Chr11	irgsp1_rep	CDS	4005022	4005093	.	-	0	Parent=Os11t0180200-02
Chr11	irgsp1_rep	three_prime_UTR	4005010	4005021	.	-	.	Parent=Os11t0180200-02
Chr11	irgsp1_rep	three_prime_UTR	4004331	4004868	.	-	.	Parent=Os11t0180200-02
Chr11	irgsp1_rep	mRNA	4014842	4017984	.	+	.	ID=Os11t0180300-01;Name=Os11t0180300-01;Locus_id=Os11g0180300;Note=Conserved hypothetical protein.;Transcript_evidence=AK072438 (DDBJ%2C Best hit);ORF_evidence=NP_001176889.1 (RefSeq);NIAS_FLcDNA=J023107D15;Expression=AK072438;TENOR=Os11t0180300-01;KEGG=Os11t0180300-01
Chr11	irgsp1_rep	five_prime_UTR	4014842	4015541	.	+	.	Parent=Os11t0180300-01
Chr11	irgsp1_rep	CDS	4015542	4015543	.	+	0	Parent=Os11t0180300-01
Chr11	irgsp1_rep	CDS	4015662	4015893	.	+	1	Parent=Os11t0180300-01
Chr11	irgsp1_rep	three_prime_UTR	4015894	4016262	.	+	.	Parent=Os11t0180300-01
Chr11	irgsp1_rep	three_prime_UTR	4016669	4017984	.	+	.	Parent=Os11t0180300-01
Chr11	irgsp1_rep	mRNA	4022666	4034481	.	+	.	ID=Os11t0180600-01;Name=Os11t0180600-01;Locus_id=Os11g0180600;Note=Similar to Type III restriction enzyme%2C res subunit family protein%2C expressed.;Transcript_evidence=AK241662 (DDBJ%2C Best hit);ORF_evidence=Q53NR4 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity (GO:0016787);InterPro=Helicase/UvrB domain (IPR006935),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J065191L06;TENOR=Os11t0180600-01;KEGG=Os11t0180600-01 (EC:3.6.1.-)
Chr11	irgsp1_rep	five_prime_UTR	4022666	4022768	.	+	.	Parent=Os11t0180600-01
Chr11	irgsp1_rep	CDS	4022769	4022831	.	+	0	Parent=Os11t0180600-01
Chr11	irgsp1_rep	CDS	4022920	4023340	.	+	0	Parent=Os11t0180600-01
Chr11	irgsp1_rep	CDS	4023826	4023969	.	+	2	Parent=Os11t0180600-01
Chr11	irgsp1_rep	CDS	4024076	4024158	.	+	2	Parent=Os11t0180600-01
Chr11	irgsp1_rep	CDS	4024263	4024377	.	+	0	Parent=Os11t0180600-01
Chr11	irgsp1_rep	CDS	4024911	4025002	.	+	2	Parent=Os11t0180600-01
Chr11	irgsp1_rep	CDS	4025160	4025214	.	+	0	Parent=Os11t0180600-01
Chr11	irgsp1_rep	CDS	4025291	4025412	.	+	2	Parent=Os11t0180600-01
Chr11	irgsp1_rep	CDS	4025490	4025603	.	+	0	Parent=Os11t0180600-01
Chr11	irgsp1_rep	CDS	4025751	4026014	.	+	0	Parent=Os11t0180600-01
Chr11	irgsp1_rep	three_prime_UTR	4026015	4026714	.	+	.	Parent=Os11t0180600-01
Chr11	irgsp1_rep	three_prime_UTR	4028128	4028185	.	+	.	Parent=Os11t0180600-01
Chr11	irgsp1_rep	three_prime_UTR	4029402	4029478	.	+	.	Parent=Os11t0180600-01
Chr11	irgsp1_rep	three_prime_UTR	4029816	4029865	.	+	.	Parent=Os11t0180600-01
Chr11	irgsp1_rep	three_prime_UTR	4029938	4030103	.	+	.	Parent=Os11t0180600-01
Chr11	irgsp1_rep	three_prime_UTR	4030212	4030333	.	+	.	Parent=Os11t0180600-01
Chr11	irgsp1_rep	three_prime_UTR	4030418	4030735	.	+	.	Parent=Os11t0180600-01
Chr11	irgsp1_rep	three_prime_UTR	4030823	4030883	.	+	.	Parent=Os11t0180600-01
Chr11	irgsp1_rep	three_prime_UTR	4031295	4032383	.	+	.	Parent=Os11t0180600-01
Chr11	irgsp1_rep	three_prime_UTR	4032553	4032607	.	+	.	Parent=Os11t0180600-01
Chr11	irgsp1_rep	three_prime_UTR	4032735	4032893	.	+	.	Parent=Os11t0180600-01
Chr11	irgsp1_rep	three_prime_UTR	4033525	4034481	.	+	.	Parent=Os11t0180600-01
Chr11	irgsp1_rep	mRNA	4043518	4074186	.	-	.	ID=Os11t0180800-01;Name=Os11t0180800-01;Locus_id=Os11g0180800;Note=Conserved hypothetical protein.;Transcript_evidence=AK119340 (DDBJ%2C Best hit);ORF_evidence=Q53NR3 (UniProt);NIAS_FLcDNA=001-131-D08;Expression=AK119340;TENOR=Os11t0180800-01;KEGG=Os11t0180800-01
Chr11	irgsp1_rep	five_prime_UTR	4074084	4074186	.	-	.	Parent=Os11t0180800-01
Chr11	irgsp1_rep	five_prime_UTR	4069653	4069810	.	-	.	Parent=Os11t0180800-01
Chr11	irgsp1_rep	five_prime_UTR	4067724	4067856	.	-	.	Parent=Os11t0180800-01
Chr11	irgsp1_rep	five_prime_UTR	4067144	4067239	.	-	.	Parent=Os11t0180800-01
Chr11	irgsp1_rep	five_prime_UTR	4065655	4065812	.	-	.	Parent=Os11t0180800-01
Chr11	irgsp1_rep	five_prime_UTR	4065425	4065529	.	-	.	Parent=Os11t0180800-01
Chr11	irgsp1_rep	five_prime_UTR	4062368	4062431	.	-	.	Parent=Os11t0180800-01
Chr11	irgsp1_rep	five_prime_UTR	4049812	4049973	.	-	.	Parent=Os11t0180800-01
Chr11	irgsp1_rep	five_prime_UTR	4048523	4048688	.	-	.	Parent=Os11t0180800-01
Chr11	irgsp1_rep	five_prime_UTR	4047461	4048417	.	-	.	Parent=Os11t0180800-01
Chr11	irgsp1_rep	five_prime_UTR	4047253	4047317	.	-	.	Parent=Os11t0180800-01
Chr11	irgsp1_rep	CDS	4047235	4047252	.	-	0	Parent=Os11t0180800-01
Chr11	irgsp1_rep	CDS	4045580	4045753	.	-	0	Parent=Os11t0180800-01
Chr11	irgsp1_rep	three_prime_UTR	4045535	4045579	.	-	.	Parent=Os11t0180800-01
Chr11	irgsp1_rep	three_prime_UTR	4043518	4044042	.	-	.	Parent=Os11t0180800-01
Chr11	irgsp1_rep	mRNA	4049330	4050752	.	+	.	ID=Os11t0180900-00;Name=Os11t0180900-00;Locus_id=Os11g0180900;Note=Myb transcription factor domain containing protein.;Transcript_evidence=BT069656 (DDBJ);ORF_evidence=Q6SL45 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);TENOR=Os11t0180900-00;KEGG=Os11t0180900-00
Chr11	irgsp1_rep	five_prime_UTR	4049330	4049580	.	+	.	Parent=Os11t0180900-00
Chr11	irgsp1_rep	CDS	4049581	4049713	.	+	0	Parent=Os11t0180900-00
Chr11	irgsp1_rep	CDS	4049822	4049951	.	+	2	Parent=Os11t0180900-00
Chr11	irgsp1_rep	CDS	4050128	4050752	.	+	1	Parent=Os11t0180900-00
Chr11	irgsp1_rep	mRNA	4050125	4050667	.	-	.	ID=Os11t0181000-00;Name=Os11t0181000-00;Locus_id=Os11g0181000;Note=Hypothetical protein.;Transcript_evidence=EU971393 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0181000-00
Chr11	irgsp1_rep	five_prime_UTR	4050348	4050667	.	-	.	Parent=Os11t0181000-00
Chr11	irgsp1_rep	CDS	4050132	4050347	.	-	0	Parent=Os11t0181000-00
Chr11	irgsp1_rep	three_prime_UTR	4050125	4050131	.	-	.	Parent=Os11t0181000-00
Chr11	irgsp1_rep	mRNA	4076905	4083472	.	+	.	ID=Os11t0181100-01;Name=Os11t0181100-01;Locus_id=Os11g0181100;Note=Similar to Transmembrane protein TM9SF3 (Fragment).;Transcript_evidence=AK100605 (DDBJ%2C Best hit);ORF_evidence=B6SY54 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Nonaspanin (TM9SF) (IPR004240);NIAS_FLcDNA=J023107G12;Expression=AK100605;TENOR=Os11t0181100-01;KEGG=Os11t0181100-01
Chr11	irgsp1_rep	five_prime_UTR	4076905	4077029	.	+	.	Parent=Os11t0181100-01
Chr11	irgsp1_rep	CDS	4077030	4077140	.	+	0	Parent=Os11t0181100-01
Chr11	irgsp1_rep	CDS	4079211	4079403	.	+	0	Parent=Os11t0181100-01
Chr11	irgsp1_rep	CDS	4079523	4079627	.	+	2	Parent=Os11t0181100-01
Chr11	irgsp1_rep	CDS	4079750	4079767	.	+	2	Parent=Os11t0181100-01
Chr11	irgsp1_rep	CDS	4079861	4079949	.	+	2	Parent=Os11t0181100-01
Chr11	irgsp1_rep	CDS	4080026	4080178	.	+	0	Parent=Os11t0181100-01
Chr11	irgsp1_rep	CDS	4080356	4080490	.	+	0	Parent=Os11t0181100-01
Chr11	irgsp1_rep	CDS	4080843	4081009	.	+	0	Parent=Os11t0181100-01
Chr11	irgsp1_rep	CDS	4081731	4081825	.	+	1	Parent=Os11t0181100-01
Chr11	irgsp1_rep	CDS	4081969	4082342	.	+	2	Parent=Os11t0181100-01
Chr11	irgsp1_rep	CDS	4082505	4082778	.	+	0	Parent=Os11t0181100-01
Chr11	irgsp1_rep	CDS	4082854	4082921	.	+	2	Parent=Os11t0181100-01
Chr11	irgsp1_rep	three_prime_UTR	4082922	4083472	.	+	.	Parent=Os11t0181100-01
Chr11	irgsp1_rep	mRNA	4084040	4084656	.	+	.	ID=Os11t0181200-01;Name=Os11t0181200-01;Locus_id=Os11g0181200;Note=Hypothetical protein.;Transcript_evidence=AK063747 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-120-G06;Expression=AK063747;TENOR=Os11t0181200-01;KEGG=Os11t0181200-01
Chr11	irgsp1_rep	five_prime_UTR	4084040	4084155	.	+	.	Parent=Os11t0181200-01
Chr11	irgsp1_rep	CDS	4084156	4084395	.	+	0	Parent=Os11t0181200-01
Chr11	irgsp1_rep	three_prime_UTR	4084396	4084656	.	+	.	Parent=Os11t0181200-01
Chr11	irgsp1_rep	mRNA	4086225	4090643	.	+	.	ID=Os11t0181400-01;Name=Os11t0181400-01;Locus_id=Os11g0181400;CGSNL Gene Symbol=MLO_;CGSNL Gene Name=POWDERY-MILDEW-RESISTANCE GENE O_;Oryzabase Gene Symbol Synonym(s)=OsMLO11%2C MLO11;Oryzabase Gene Name Synonym(s)=powdery-MiLdew-resistance gene O11%2C Mildew resistance Locus O-11;Note=Similar to barley mlo defense gene homolog4.;Transcript_evidence=AK242559 (DDBJ%2C Best hit);ORF_evidence=A6MZJ9 (UniProt);GO=Biological Process: cell death (GO:0008219),Cellular Component: integral to membrane (GO:0016021);InterPro=Mlo-related protein (IPR004326);NIAS_FLcDNA=J090002G02;Oryzabase=9194;TENOR=Os11t0181400-01;KEGG=Os11t0181400-01
Chr11	irgsp1_rep	five_prime_UTR	4086225	4086377	.	+	.	Parent=Os11t0181400-01
Chr11	irgsp1_rep	CDS	4086378	4086494	.	+	0	Parent=Os11t0181400-01
Chr11	irgsp1_rep	CDS	4086644	4086701	.	+	0	Parent=Os11t0181400-01
Chr11	irgsp1_rep	CDS	4086987	4087210	.	+	2	Parent=Os11t0181400-01
Chr11	irgsp1_rep	CDS	4087308	4087424	.	+	0	Parent=Os11t0181400-01
Chr11	irgsp1_rep	CDS	4087500	4087560	.	+	0	Parent=Os11t0181400-01
Chr11	irgsp1_rep	CDS	4087644	4087735	.	+	2	Parent=Os11t0181400-01
Chr11	irgsp1_rep	CDS	4087943	4088017	.	+	0	Parent=Os11t0181400-01
Chr11	irgsp1_rep	CDS	4088149	4088234	.	+	0	Parent=Os11t0181400-01
Chr11	irgsp1_rep	CDS	4088528	4088577	.	+	1	Parent=Os11t0181400-01
Chr11	irgsp1_rep	CDS	4088679	4088719	.	+	2	Parent=Os11t0181400-01
Chr11	irgsp1_rep	CDS	4088824	4088994	.	+	0	Parent=Os11t0181400-01
Chr11	irgsp1_rep	CDS	4089110	4089145	.	+	0	Parent=Os11t0181400-01
Chr11	irgsp1_rep	CDS	4089477	4089544	.	+	0	Parent=Os11t0181400-01
Chr11	irgsp1_rep	CDS	4089690	4089750	.	+	1	Parent=Os11t0181400-01
Chr11	irgsp1_rep	CDS	4090073	4090363	.	+	0	Parent=Os11t0181400-01
Chr11	irgsp1_rep	three_prime_UTR	4090364	4090643	.	+	.	Parent=Os11t0181400-01
Chr11	irgsp1_rep	mRNA	4091361	4093585	.	+	.	ID=Os11t0181500-01;Name=Os11t0181500-01;Locus_id=Os11g0181500;CGSNL Gene Symbol=ISC12;CGSNL Gene Name=IRON-SULFUR CLUSTER PROTEIN 12;Oryzabase Gene Symbol Synonym(s)=OsISC12;Oryzabase Gene Name Synonym(s)=Iron-sulfur cluster protein 12;Note=Similar to Nitrogen fixation like protein.;Transcript_evidence=AK067601 (DDBJ%2C Best hit),AK060074 (DDBJ%2C Best hit);ORF_evidence=B8BJF8 (UniProt);GO=Biological Process: iron-sulfur cluster assembly (GO:0016226),Molecular Function: iron ion binding (GO:0005506),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=NIF system FeS cluster assembly%2C NifU%2C C-terminal (IPR001075);NIAS_FLcDNA=J013108O03,006-306-B05;Oryzabase=13427;Expression=AK067601;TENOR=Os11t0181500-01;KEGG=Os11t0181500-01
Chr11	irgsp1_rep	five_prime_UTR	4091361	4091489	.	+	.	Parent=Os11t0181500-01
Chr11	irgsp1_rep	CDS	4091490	4091573	.	+	0	Parent=Os11t0181500-01
Chr11	irgsp1_rep	CDS	4091675	4091774	.	+	0	Parent=Os11t0181500-01
Chr11	irgsp1_rep	CDS	4092431	4092741	.	+	2	Parent=Os11t0181500-01
Chr11	irgsp1_rep	CDS	4093202	4093393	.	+	0	Parent=Os11t0181500-01
Chr11	irgsp1_rep	three_prime_UTR	4093394	4093585	.	+	.	Parent=Os11t0181500-01
Chr11	irgsp1_rep	mRNA	4094565	4097141	.	+	.	ID=Os11t0181700-01;Name=Os11t0181700-01;Locus_id=Os11g0181700;Note=Similar to retinol dehydrogenase 12.;Transcript_evidence=AK065928 (DDBJ%2C Best hit);ORF_evidence=NP_001149089.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013044J03;Expression=AK065928;TENOR=Os11t0181700-01;KEGG=Os11t0181700-01 (EC:1.1.-.-)
Chr11	irgsp1_rep	five_prime_UTR	4094565	4094627	.	+	.	Parent=Os11t0181700-01
Chr11	irgsp1_rep	CDS	4094628	4094748	.	+	0	Parent=Os11t0181700-01
Chr11	irgsp1_rep	CDS	4094850	4095115	.	+	2	Parent=Os11t0181700-01
Chr11	irgsp1_rep	three_prime_UTR	4095116	4095716	.	+	.	Parent=Os11t0181700-01
Chr11	irgsp1_rep	three_prime_UTR	4095836	4096480	.	+	.	Parent=Os11t0181700-01
Chr11	irgsp1_rep	three_prime_UTR	4096561	4096616	.	+	.	Parent=Os11t0181700-01
Chr11	irgsp1_rep	three_prime_UTR	4096739	4097141	.	+	.	Parent=Os11t0181700-01
Chr11	irgsp1_rep	mRNA	4094598	4097141	.	+	.	ID=Os11t0181700-02;Name=Os11t0181700-02;Locus_id=Os11g0181700;Note=Similar to Short-chain dehydrogenase Tic32.;Transcript_evidence=AK062546 (DDBJ%2C Best hit);ORF_evidence=NP_001149089.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-104-G08;Expression=AK062546;TENOR=Os11t0181700-02;KEGG=Os11t0181700-02
Chr11	irgsp1_rep	five_prime_UTR	4094598	4094627	.	+	.	Parent=Os11t0181700-02
Chr11	irgsp1_rep	CDS	4094628	4094748	.	+	0	Parent=Os11t0181700-02
Chr11	irgsp1_rep	CDS	4094850	4095084	.	+	2	Parent=Os11t0181700-02
Chr11	irgsp1_rep	CDS	4095637	4095716	.	+	1	Parent=Os11t0181700-02
Chr11	irgsp1_rep	CDS	4095801	4095954	.	+	2	Parent=Os11t0181700-02
Chr11	irgsp1_rep	CDS	4096048	4096126	.	+	1	Parent=Os11t0181700-02
Chr11	irgsp1_rep	CDS	4096399	4096480	.	+	0	Parent=Os11t0181700-02
Chr11	irgsp1_rep	CDS	4096561	4096616	.	+	2	Parent=Os11t0181700-02
Chr11	irgsp1_rep	CDS	4096739	4096930	.	+	0	Parent=Os11t0181700-02
Chr11	irgsp1_rep	three_prime_UTR	4096931	4097141	.	+	.	Parent=Os11t0181700-02
Chr11	irgsp1_rep	mRNA	4097620	4101455	.	+	.	ID=Os11t0181800-01;Name=Os11t0181800-01;Locus_id=Os11g0181800;Note=Similar to Short-chain dehydrogenase Tic32.;Transcript_evidence=AK071972 (DDBJ%2C Best hit);ORF_evidence=NP_001149089.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013084L13;Expression=AK071972;TENOR=Os11t0181800-01;KEGG=Os11t0181800-01
Chr11	irgsp1_rep	five_prime_UTR	4097620	4097676	.	+	.	Parent=Os11t0181800-01
Chr11	irgsp1_rep	CDS	4097677	4097800	.	+	0	Parent=Os11t0181800-01
Chr11	irgsp1_rep	CDS	4098328	4098559	.	+	2	Parent=Os11t0181800-01
Chr11	irgsp1_rep	CDS	4098670	4098749	.	+	1	Parent=Os11t0181800-01
Chr11	irgsp1_rep	CDS	4098858	4099011	.	+	2	Parent=Os11t0181800-01
Chr11	irgsp1_rep	CDS	4100335	4100413	.	+	1	Parent=Os11t0181800-01
Chr11	irgsp1_rep	CDS	4100615	4100696	.	+	0	Parent=Os11t0181800-01
Chr11	irgsp1_rep	CDS	4100770	4100825	.	+	2	Parent=Os11t0181800-01
Chr11	irgsp1_rep	CDS	4100912	4101094	.	+	0	Parent=Os11t0181800-01
Chr11	irgsp1_rep	three_prime_UTR	4101095	4101455	.	+	.	Parent=Os11t0181800-01
Chr11	irgsp1_rep	mRNA	4102967	4110154	.	+	.	ID=Os11t0181900-01;Name=Os11t0181900-01;Locus_id=Os11g0181900;Note=Prefoldin domain containing protein.;Transcript_evidence=AK063374 (DDBJ%2C Best hit);ORF_evidence=Q53MM0 (UniProt);NIAS_FLcDNA=001-114-E08;Expression=AK063374;TENOR=Os11t0181900-01;KEGG=Os11t0181900-01
Chr11	irgsp1_rep	five_prime_UTR	4102967	4103017	.	+	.	Parent=Os11t0181900-01
Chr11	irgsp1_rep	CDS	4103018	4103202	.	+	0	Parent=Os11t0181900-01
Chr11	irgsp1_rep	CDS	4103367	4103565	.	+	1	Parent=Os11t0181900-01
Chr11	irgsp1_rep	CDS	4103661	4103846	.	+	0	Parent=Os11t0181900-01
Chr11	irgsp1_rep	CDS	4105436	4105627	.	+	0	Parent=Os11t0181900-01
Chr11	irgsp1_rep	CDS	4106581	4106802	.	+	0	Parent=Os11t0181900-01
Chr11	irgsp1_rep	CDS	4108840	4109046	.	+	0	Parent=Os11t0181900-01
Chr11	irgsp1_rep	CDS	4109283	4109684	.	+	0	Parent=Os11t0181900-01
Chr11	irgsp1_rep	CDS	4109763	4109813	.	+	0	Parent=Os11t0181900-01
Chr11	irgsp1_rep	three_prime_UTR	4109814	4109832	.	+	.	Parent=Os11t0181900-01
Chr11	irgsp1_rep	three_prime_UTR	4109909	4110154	.	+	.	Parent=Os11t0181900-01
Chr11	irgsp1_rep	mRNA	4122540	4123510	.	-	.	ID=Os11t0182100-01;Name=Os11t0182100-01;Locus_id=Os11g0182100;Note=Protein of unknown function DUF688 domain containing protein.;Transcript_evidence=AK107888 (DDBJ%2C Best hit);ORF_evidence=Q53MM1 (UniProt);InterPro=Protein of unknown function DUF688 (IPR007789);NIAS_FLcDNA=002-134-E03;Expression=AK107888;TENOR=Os11t0182100-01;KEGG=Os11t0182100-01
Chr11	irgsp1_rep	CDS	4122740	4123510	.	-	0	Parent=Os11t0182100-01
Chr11	irgsp1_rep	three_prime_UTR	4122540	4122739	.	-	.	Parent=Os11t0182100-01
Chr11	irgsp1_rep	mRNA	4128533	4130570	.	-	.	ID=Os11t0182200-01;Name=Os11t0182200-01;Locus_id=Os11g0182200;Note=Transferase family protein.;Transcript_evidence=AK099589 (DDBJ%2C Best hit),AK060023 (DDBJ%2C Best hit);ORF_evidence=NP_001149297.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J013043H09,006-302-H06;Expression=AK099589;TENOR=Os11t0182200-01;KEGG=Os11t0182200-01
Chr11	irgsp1_rep	five_prime_UTR	4130563	4130570	.	-	.	Parent=Os11t0182200-01
Chr11	irgsp1_rep	CDS	4130134	4130562	.	-	0	Parent=Os11t0182200-01
Chr11	irgsp1_rep	CDS	4128672	4129586	.	-	0	Parent=Os11t0182200-01
Chr11	irgsp1_rep	three_prime_UTR	4128533	4128671	.	-	.	Parent=Os11t0182200-01
Chr11	irgsp1_rep	mRNA	4128559	4130545	.	-	.	ID=Os11t0182200-02;Name=Os11t0182200-02;Locus_id=Os11g0182200;Note=Similar to anthranilate N-benzoyltransferase protein 1.;Transcript_evidence=AK104889 (DDBJ%2C Best hit);ORF_evidence=NP_001149297.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=001-045-C12;TENOR=Os11t0182200-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	4130539	4130545	.	-	.	Parent=Os11t0182200-02
Chr11	irgsp1_rep	CDS	4130134	4130538	.	-	0	Parent=Os11t0182200-02
Chr11	irgsp1_rep	CDS	4128672	4129586	.	-	0	Parent=Os11t0182200-02
Chr11	irgsp1_rep	three_prime_UTR	4128559	4128671	.	-	.	Parent=Os11t0182200-02
Chr11	irgsp1_rep	mRNA	4134329	4140479	.	-	.	ID=Os11t0182400-01;Name=Os11t0182400-01;Locus_id=Os11g0182400;Oryzabase Gene Symbol Synonym(s)=OsWD40-184%2C OsFbox571%2C Os_F0380;Oryzabase Gene Name Synonym(s)=F-box protein 571;Note=WD40/YVTN repeat-like domain containing protein.;Transcript_evidence=AK112089 (DDBJ%2C Best hit);ORF_evidence=B6TCZ0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),F-box domain%2C cyclin-like (IPR001810),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-105-F05;Oryzabase=10865;Expression=AK112089;TENOR=Os11t0182400-01;KEGG=Os11t0182400-01
Chr11	irgsp1_rep	five_prime_UTR	4140362	4140479	.	-	.	Parent=Os11t0182400-01
Chr11	irgsp1_rep	CDS	4140174	4140361	.	-	0	Parent=Os11t0182400-01
Chr11	irgsp1_rep	CDS	4139107	4139292	.	-	1	Parent=Os11t0182400-01
Chr11	irgsp1_rep	CDS	4138824	4138878	.	-	1	Parent=Os11t0182400-01
Chr11	irgsp1_rep	CDS	4138252	4138350	.	-	0	Parent=Os11t0182400-01
Chr11	irgsp1_rep	CDS	4137363	4137466	.	-	0	Parent=Os11t0182400-01
Chr11	irgsp1_rep	CDS	4137051	4137140	.	-	1	Parent=Os11t0182400-01
Chr11	irgsp1_rep	CDS	4136398	4136540	.	-	1	Parent=Os11t0182400-01
Chr11	irgsp1_rep	CDS	4135698	4135782	.	-	2	Parent=Os11t0182400-01
Chr11	irgsp1_rep	CDS	4134727	4135093	.	-	1	Parent=Os11t0182400-01
Chr11	irgsp1_rep	three_prime_UTR	4134329	4134726	.	-	.	Parent=Os11t0182400-01
Chr11	irgsp1_rep	mRNA	4150087	4154740	.	-	.	ID=Os11t0182500-01;Name=Os11t0182500-01;Locus_id=Os11g0182500;RAP-DB Gene Symbol Synonym(s)=OsPIANK1;RAP-DB Gene Name Synonym(s)=Ankyrin Repeat-Containing Protein OsPIANK1;Oryzabase Gene Symbol Synonym(s)=OsPIANK1;Oryzabase Gene Name Synonym(s)=Ankyrin Repeat-Containing Protein OsPIANK1;Note=Ankyrin repeat-containing protein%2C Regulator in basal defense;Transcript_evidence=AK068021;ORF_evidence=Q2R9Q1;GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat-containing domain (IPR020683),Ankyrin repeat (IPR002110);NIAS_FLcDNA=J013134J17;Manual Curation=November 27%2C 2015;Literature_PMID=23555750;Oryzabase=11757;TENOR=Os11t0182500-01
Chr11	irgsp1_rep	five_prime_UTR	4154659	4154740	.	-	.	Parent=Os11t0182500-01
Chr11	irgsp1_rep	CDS	4154484	4154658	.	-	0	Parent=Os11t0182500-01
Chr11	irgsp1_rep	CDS	4150355	4150755	.	-	2	Parent=Os11t0182500-01
Chr11	irgsp1_rep	three_prime_UTR	4150087	4150354	.	-	.	Parent=Os11t0182500-01
Chr11	irgsp1_rep	mRNA	4151438	4154736	.	-	.	ID=Os11t0182500-02;Name=Os11t0182500-02;Locus_id=Os11g0182500;Oryzabase Gene Symbol Synonym(s)=OsPIANK1;Oryzabase Gene Name Synonym(s)=Ankyrin Repeat-Containing Protein OsPIANK1;Note=Hypothetical conserved gene.;Transcript_evidence=AK108012 (DDBJ%2C Best hit);ORF_evidence=B8BJG4 (UniProt);NIAS_FLcDNA=002-135-H06;Oryzabase=11757;Expression=AK108012;TENOR=Os11t0182500-02;KEGG=Os11t0182500-02
Chr11	irgsp1_rep	five_prime_UTR	4154716	4154736	.	-	.	Parent=Os11t0182500-02
Chr11	irgsp1_rep	CDS	4154484	4154715	.	-	0	Parent=Os11t0182500-02
Chr11	irgsp1_rep	CDS	4151677	4151828	.	-	2	Parent=Os11t0182500-02
Chr11	irgsp1_rep	three_prime_UTR	4151438	4151676	.	-	.	Parent=Os11t0182500-02
Chr11	irgsp1_rep	mRNA	4168279	4170029	.	-	.	ID=Os11t0182900-00;Name=Os11t0182900-00;Locus_id=Os11g0182900;Note=Ankyrin repeat domain containing protein.;Transcript_evidence=DQ119302 (DDBJ%2C Best hit);ORF_evidence=NP_001065908.2 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);TENOR=Os11t0182900-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	4169952	4170029	.	-	.	Parent=Os11t0182900-00
Chr11	irgsp1_rep	CDS	4169840	4169951	.	-	0	Parent=Os11t0182900-00
Chr11	irgsp1_rep	CDS	4169220	4169749	.	-	2	Parent=Os11t0182900-00
Chr11	irgsp1_rep	CDS	4168339	4169085	.	-	0	Parent=Os11t0182900-00
Chr11	irgsp1_rep	three_prime_UTR	4168279	4168338	.	-	.	Parent=Os11t0182900-00
Chr11	irgsp1_rep	mRNA	4184192	4188218	.	-	.	ID=Os11t0183150-00;Name=Os11t0183150-00;Locus_id=Os11g0183150;Note=Ankyrin repeat domain containing protein.;Transcript_evidence=AK361159 (DDBJ);ORF_evidence=Q53KK8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);TENOR=Os11t0183150-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	4187696	4188218	.	-	0	Parent=Os11t0183150-00
Chr11	irgsp1_rep	CDS	4187084	4187613	.	-	2	Parent=Os11t0183150-00
Chr11	irgsp1_rep	CDS	4184192	4184866	.	-	0	Parent=Os11t0183150-00
Chr11	irgsp1_rep	mRNA	4220839	4229441	.	+	.	ID=Os11t0183700-01;Name=Os11t0183700-01;Locus_id=Os11g0183700;RAP-DB Gene Symbol Synonym(s)=OsSWI3C;Oryzabase Gene Symbol Synonym(s)=OsSWI3C%2C OsCHB705%2C CHB705;Oryzabase Gene Name Synonym(s)=SWIRM domain-containing protein OsSWI3C;Note=Subunit of SWITCH/SUCROSE NONFERMENTING (SWI/SNF) Chromatin remodeling complex%2C Negative regulation of drought resistance and root growth;Transcript_evidence=AK066941;ORF_evidence=Q53KK6;GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Homeobox-like domain superfamily (IPR009057),Winged helix-like DNA-binding domain superfamily (IPR036388),SWIRM domain (IPR007526),SANT/Myb domain (IPR001005),SANT domain (IPR017884),SMARCC%2C C-terminal (IPR032451);NIAS_FLcDNA=J013089J18;Manual Curation=March 6%2C 2020;Literature_PMID=32129897;Oryzabase=11368;Expression=AK066941;TENOR=Os11t0183700-01;KEGG=Os11t0183700-01;Subcellular location=nucleus (GO:0005634)
Chr11	irgsp1_rep	five_prime_UTR	4220839	4220975	.	+	.	Parent=Os11t0183700-01
Chr11	irgsp1_rep	CDS	4220976	4221003	.	+	0	Parent=Os11t0183700-01
Chr11	irgsp1_rep	CDS	4221077	4221622	.	+	2	Parent=Os11t0183700-01
Chr11	irgsp1_rep	CDS	4221698	4222254	.	+	2	Parent=Os11t0183700-01
Chr11	irgsp1_rep	CDS	4223918	4224272	.	+	0	Parent=Os11t0183700-01
Chr11	irgsp1_rep	CDS	4224393	4224466	.	+	2	Parent=Os11t0183700-01
Chr11	irgsp1_rep	CDS	4226567	4226658	.	+	0	Parent=Os11t0183700-01
Chr11	irgsp1_rep	CDS	4227102	4227175	.	+	1	Parent=Os11t0183700-01
Chr11	irgsp1_rep	CDS	4227282	4227424	.	+	2	Parent=Os11t0183700-01
Chr11	irgsp1_rep	CDS	4228753	4229238	.	+	0	Parent=Os11t0183700-01
Chr11	irgsp1_rep	three_prime_UTR	4229239	4229441	.	+	.	Parent=Os11t0183700-01
Chr11	irgsp1_rep	mRNA	4224129	4229391	.	+	.	ID=Os11t0183700-02;Name=Os11t0183700-02;Locus_id=Os11g0183700;CGSNL Gene Symbol=SWI3C;Oryzabase Gene Symbol Synonym(s)=OsSWI3C%2C OsCHB705%2C CHB705;Oryzabase Gene Name Synonym(s)=SWIRM domain-containing protein OsSWI3C%2C SWITCH/SUCROSE NONFERMENTING (SWI/SNF) Chromatin remodelling complex subunit 3C;Note=Hypothetical conserved gene.;Transcript_evidence=AK061734 (DDBJ%2C Best hit);ORF_evidence=C9DTN0 (UniProt);NIAS_FLcDNA=001-038-D06;Oryzabase=11368;Expression=AK061734;TENOR=Os11t0183700-02;KEGG=Os11t0183700-02
Chr11	irgsp1_rep	five_prime_UTR	4224129	4224130	.	+	.	Parent=Os11t0183700-02
Chr11	irgsp1_rep	CDS	4224131	4224272	.	+	0	Parent=Os11t0183700-02
Chr11	irgsp1_rep	CDS	4224393	4224466	.	+	2	Parent=Os11t0183700-02
Chr11	irgsp1_rep	CDS	4226567	4226658	.	+	0	Parent=Os11t0183700-02
Chr11	irgsp1_rep	CDS	4227102	4227175	.	+	1	Parent=Os11t0183700-02
Chr11	irgsp1_rep	CDS	4227282	4227424	.	+	2	Parent=Os11t0183700-02
Chr11	irgsp1_rep	CDS	4228753	4229238	.	+	0	Parent=Os11t0183700-02
Chr11	irgsp1_rep	three_prime_UTR	4229239	4229391	.	+	.	Parent=Os11t0183700-02
Chr11	irgsp1_rep	mRNA	4239143	4243317	.	+	.	ID=Os11t0183800-00;Name=Os11t0183800-00;Locus_id=Os11g0183800;Oryzabase Gene Symbol Synonym(s)=CSIL2%2C OsCSIL2;Oryzabase Gene Name Synonym(s)=CSI-like 2%2C CELLULOSE SYNTHASE INTERACTING1-like 2;Note=Similar to Armadillo/beta-catenin-like repeat family protein%2C expressed.;Transcript_evidence=BT037123 (DDBJ);ORF_evidence=Q2R9P0 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),Armadillo (IPR000225),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),C2 membrane targeting protein (IPR018029);Oryzabase=22131;TENOR=Os11t0183800-00;KEGG=Os11t0183800-00
Chr11	irgsp1_rep	CDS	4239143	4241696	.	+	0	Parent=Os11t0183800-00
Chr11	irgsp1_rep	CDS	4241990	4242444	.	+	2	Parent=Os11t0183800-00
Chr11	irgsp1_rep	CDS	4242675	4242791	.	+	0	Parent=Os11t0183800-00
Chr11	irgsp1_rep	CDS	4242921	4243079	.	+	0	Parent=Os11t0183800-00
Chr11	irgsp1_rep	three_prime_UTR	4243080	4243317	.	+	.	Parent=Os11t0183800-00
Chr11	irgsp1_rep	mRNA	4247310	4251570	.	+	.	ID=Os11t0183900-01;Name=Os11t0183900-01;Locus_id=Os11g0183900;Oryzabase Gene Symbol Synonym(s)=OsAsp2;Oryzabase Gene Name Synonym(s)=aspartic protease 2;Note=Similar to Aspartic proteinase Asp1 precursor (EC 3.4.23.-) (OsAsp1) (Nucellin- like protein).;Transcript_evidence=AK068348 (DDBJ%2C Best hit);ORF_evidence=B6TY60 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J013146J21;Oryzabase=13346;Expression=AK068348;TENOR=Os11t0183900-01;KEGG=Os11t0183900-01
Chr11	irgsp1_rep	five_prime_UTR	4247310	4247439	.	+	.	Parent=Os11t0183900-01
Chr11	irgsp1_rep	CDS	4247440	4247603	.	+	0	Parent=Os11t0183900-01
Chr11	irgsp1_rep	CDS	4248636	4248753	.	+	1	Parent=Os11t0183900-01
Chr11	irgsp1_rep	CDS	4249195	4249427	.	+	0	Parent=Os11t0183900-01
Chr11	irgsp1_rep	CDS	4249503	4249739	.	+	1	Parent=Os11t0183900-01
Chr11	irgsp1_rep	CDS	4250501	4250639	.	+	1	Parent=Os11t0183900-01
Chr11	irgsp1_rep	CDS	4250721	4250903	.	+	0	Parent=Os11t0183900-01
Chr11	irgsp1_rep	CDS	4250997	4251066	.	+	0	Parent=Os11t0183900-01
Chr11	irgsp1_rep	CDS	4251152	4251264	.	+	2	Parent=Os11t0183900-01
Chr11	irgsp1_rep	three_prime_UTR	4251265	4251570	.	+	.	Parent=Os11t0183900-01
Chr11	irgsp1_rep	mRNA	4249283	4251716	.	+	.	ID=Os11t0183900-02;Name=Os11t0183900-02;Locus_id=Os11g0183900;Oryzabase Gene Symbol Synonym(s)=OsAsp2;Oryzabase Gene Name Synonym(s)=aspartic protease 2;Note=Similar to Nucellin-like aspartic protease (Fragment).;Transcript_evidence=AK061884 (DDBJ%2C Best hit);ORF_evidence=Q8L886 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=001-041-F04;Oryzabase=13346;Expression=AK061884;TENOR=Os11t0183900-02;KEGG=Os11t0183900-02
Chr11	irgsp1_rep	five_prime_UTR	4249283	4249284	.	+	.	Parent=Os11t0183900-02
Chr11	irgsp1_rep	CDS	4249285	4249427	.	+	0	Parent=Os11t0183900-02
Chr11	irgsp1_rep	CDS	4249503	4249739	.	+	1	Parent=Os11t0183900-02
Chr11	irgsp1_rep	CDS	4250501	4250639	.	+	1	Parent=Os11t0183900-02
Chr11	irgsp1_rep	CDS	4250721	4250903	.	+	0	Parent=Os11t0183900-02
Chr11	irgsp1_rep	CDS	4250997	4251066	.	+	0	Parent=Os11t0183900-02
Chr11	irgsp1_rep	CDS	4251152	4251264	.	+	2	Parent=Os11t0183900-02
Chr11	irgsp1_rep	three_prime_UTR	4251265	4251716	.	+	.	Parent=Os11t0183900-02
Chr11	irgsp1_rep	mRNA	4252444	4255806	.	+	.	ID=Os11t0184100-01;Name=Os11t0184100-01;Locus_id=Os11g0184100;Note=3-oxo-5-alpha-steroid 4-dehydrogenase%2C C-terminal domain containing protein.;Transcript_evidence=AK240790 (DDBJ%2C Best hit);ORF_evidence=Q53NE6 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: steroid metabolic process (GO:0008202),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: cytoplasm (GO:0005737),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: 3-oxo-5-alpha-steroid 4-dehydrogenase activity (GO:0003865),Molecular Function: oxidoreductase activity%2C acting on the CH-CH group of donors (GO:0016627);InterPro=3-oxo-5-alpha-steroid 4-dehydrogenase%2C C-terminal (IPR001104),3-oxo-5-alpha-steroid 4-dehydrogenase (IPR016636);NIAS_FLcDNA=J053099M17;TENOR=Os11t0184100-01;KEGG=Os11t0184100-01 (EC:1.3.99.5)
Chr11	irgsp1_rep	five_prime_UTR	4252444	4252602	.	+	.	Parent=Os11t0184100-01
Chr11	irgsp1_rep	five_prime_UTR	4253686	4253865	.	+	.	Parent=Os11t0184100-01
Chr11	irgsp1_rep	CDS	4253866	4254684	.	+	0	Parent=Os11t0184100-01
Chr11	irgsp1_rep	three_prime_UTR	4254685	4255101	.	+	.	Parent=Os11t0184100-01
Chr11	irgsp1_rep	three_prime_UTR	4255191	4255806	.	+	.	Parent=Os11t0184100-01
Chr11	irgsp1_rep	mRNA	4263137	4283119	.	+	.	ID=Os11t0184300-00;Name=Os11t0184300-00;Locus_id=Os11g0184300;CGSNL Gene Symbol=BGLU35;CGSNL Gene Name=BETA-GLUCOSIDASE 35;Oryzabase Gene Symbol Synonym(s)=Os11bglu35%2C OsBGlu35;Oryzabase Gene Name Synonym(s)=beta-glucosidase 35;Note=Beta-glucosidase 30.;Transcript_evidence=Q53NF0 (UniProt);ORF_evidence=Q0J0N4 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);Oryzabase=12108;TENOR=Os11t0184300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	4263137	4263197	.	+	0	Parent=Os11t0184300-00
Chr11	irgsp1_rep	CDS	4263345	4263458	.	+	2	Parent=Os11t0184300-00
Chr11	irgsp1_rep	CDS	4263598	4263656	.	+	2	Parent=Os11t0184300-00
Chr11	irgsp1_rep	CDS	4263759	4263834	.	+	0	Parent=Os11t0184300-00
Chr11	irgsp1_rep	CDS	4263930	4264007	.	+	2	Parent=Os11t0184300-00
Chr11	irgsp1_rep	CDS	4264113	4264201	.	+	2	Parent=Os11t0184300-00
Chr11	irgsp1_rep	CDS	4264271	4264281	.	+	0	Parent=Os11t0184300-00
Chr11	irgsp1_rep	CDS	4264344	4264592	.	+	1	Parent=Os11t0184300-00
Chr11	irgsp1_rep	CDS	4264681	4265053	.	+	1	Parent=Os11t0184300-00
Chr11	irgsp1_rep	CDS	4265182	4265281	.	+	0	Parent=Os11t0184300-00
Chr11	irgsp1_rep	CDS	4282845	4282954	.	+	2	Parent=Os11t0184300-00
Chr11	irgsp1_rep	CDS	4283003	4283119	.	+	0	Parent=Os11t0184300-00
Chr11	irgsp1_rep	mRNA	4263757	4283124	.	-	.	ID=Os11t0184350-00;Name=Os11t0184350-00;Locus_id=Os11g0184350;Note=Hypothetical protein.;Transcript_evidence=tplb0037o13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0184350-00
Chr11	irgsp1_rep	five_prime_UTR	4283123	4283124	.	-	.	Parent=Os11t0184350-00
Chr11	irgsp1_rep	CDS	4282835	4283122	.	-	0	Parent=Os11t0184350-00
Chr11	irgsp1_rep	three_prime_UTR	4282819	4282834	.	-	.	Parent=Os11t0184350-00
Chr11	irgsp1_rep	three_prime_UTR	4265203	4265264	.	-	.	Parent=Os11t0184350-00
Chr11	irgsp1_rep	three_prime_UTR	4264656	4265075	.	-	.	Parent=Os11t0184350-00
Chr11	irgsp1_rep	three_prime_UTR	4264344	4264567	.	-	.	Parent=Os11t0184350-00
Chr11	irgsp1_rep	three_prime_UTR	4264085	4264201	.	-	.	Parent=Os11t0184350-00
Chr11	irgsp1_rep	three_prime_UTR	4263757	4263878	.	-	.	Parent=Os11t0184350-00
Chr11	irgsp1_rep	mRNA	4287928	4291230	.	+	.	ID=Os11t0184600-00;Name=Os11t0184600-00;Locus_id=Os11g0184600;Note=Similar to Aspartic proteinase Asp1.;Transcript_evidence=BT035552 (DDBJ);ORF_evidence=B9G9R6 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);TENOR=Os11t0184600-00;KEGG=Os11t0184600-00
Chr11	irgsp1_rep	CDS	4287928	4288052	.	+	0	Parent=Os11t0184600-00
Chr11	irgsp1_rep	CDS	4288188	4288311	.	+	1	Parent=Os11t0184600-00
Chr11	irgsp1_rep	CDS	4288939	4289165	.	+	0	Parent=Os11t0184600-00
Chr11	irgsp1_rep	CDS	4289238	4289467	.	+	1	Parent=Os11t0184600-00
Chr11	irgsp1_rep	CDS	4290440	4290441	.	+	2	Parent=Os11t0184600-00
Chr11	irgsp1_rep	three_prime_UTR	4290442	4290578	.	+	.	Parent=Os11t0184600-00
Chr11	irgsp1_rep	three_prime_UTR	4290678	4290863	.	+	.	Parent=Os11t0184600-00
Chr11	irgsp1_rep	three_prime_UTR	4290981	4291044	.	+	.	Parent=Os11t0184600-00
Chr11	irgsp1_rep	three_prime_UTR	4291146	4291230	.	+	.	Parent=Os11t0184600-00
Chr11	irgsp1_rep	mRNA	4295162	4297455	.	+	.	ID=Os11t0184800-01;Name=Os11t0184800-01;Locus_id=Os11g0184800;RAP-DB Gene Symbol Synonym(s)=OsAsp1;RAP-DB Gene Name Synonym(s)=aspartic protease 1;Oryzabase Gene Symbol Synonym(s)=OsAsp1;Oryzabase Gene Name Synonym(s)=aspartic protease 1;Note=Nucellin-like protein%2C Aspartic protease 1%2C Regulation of distinct caryopses development in different branches%2C Negative regulation of transcriptional inhibitor of auxin biosynthesis;Transcript_evidence=AK110811;ORF_evidence=Q0IU52;GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Aspartic peptidase domain superfamily (IPR021109),Xylanase inhibitor%2C N-terminal (IPR032861),Peptidase family A1 domain (IPR033121),Xylanase inhibitor%2C C-terminal (IPR032799),Aspartic peptidase%2C active site (IPR001969);NIAS_FLcDNA=002-171-F05;Manual Curation=October 28%2C 2020;Literature_PMID=33108367;Oryzabase=12553;Expression=AK110811;TENOR=Os11t0184800-01;KEGG=Os11t0184800-01;Subcellular location=endoplasmic reticulum (GO:0005783)
Chr11	irgsp1_rep	five_prime_UTR	4295162	4295261	.	+	.	Parent=Os11t0184800-01
Chr11	irgsp1_rep	CDS	4295262	4295368	.	+	0	Parent=Os11t0184800-01
Chr11	irgsp1_rep	CDS	4295458	4295575	.	+	1	Parent=Os11t0184800-01
Chr11	irgsp1_rep	CDS	4295762	4295988	.	+	0	Parent=Os11t0184800-01
Chr11	irgsp1_rep	CDS	4296107	4296331	.	+	1	Parent=Os11t0184800-01
Chr11	irgsp1_rep	CDS	4296504	4296654	.	+	1	Parent=Os11t0184800-01
Chr11	irgsp1_rep	CDS	4296741	4296947	.	+	0	Parent=Os11t0184800-01
Chr11	irgsp1_rep	CDS	4297044	4297122	.	+	0	Parent=Os11t0184800-01
Chr11	irgsp1_rep	CDS	4297207	4297325	.	+	2	Parent=Os11t0184800-01
Chr11	irgsp1_rep	three_prime_UTR	4297326	4297455	.	+	.	Parent=Os11t0184800-01
Chr11	irgsp1_rep	mRNA	4301019	4301784	.	-	.	ID=Os11t0184900-01;Name=Os11t0184900-01;Locus_id=Os11g0184900;CGSNL Gene Symbol=NAC5;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 5;Oryzabase Gene Symbol Synonym(s)=OsNAC5%2C NAC71%2C ONAC071%2C ONAC009%2C ONAC9%2C ONAC020%2C ONAC20%2C OnNAC5*%2C OnNAC5%2C OsNAC5/ONAC009;Oryzabase Gene Name Synonym(s)=NAC 5%2C NAC domain-containing protein 71%2C ONNAC GENE 5%2C OsNAC gene-5%2C NAC domain-containing protein 9%2C NAC domain-containing protein 20%2C OnNAC gene-5;Note=Similar to OsNAC5 protein [imported]-rice.;Transcript_evidence=AK064292 (DDBJ%2C Best hit);ORF_evidence=Q53NF6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=002-105-H07;Oryzabase=2261;TENOR=Os11t0184900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	4301423	4301784	.	-	.	Parent=Os11t0184900-01
Chr11	irgsp1_rep	CDS	4301114	4301422	.	-	0	Parent=Os11t0184900-01
Chr11	irgsp1_rep	three_prime_UTR	4301019	4301113	.	-	.	Parent=Os11t0184900-01
Chr11	irgsp1_rep	mRNA	4299277	4301783	.	-	.	ID=Os11t0184900-02;Name=Os11t0184900-02;Locus_id=Os11g0184900;RAP-DB Gene Symbol Synonym(s)=NAC5%2C OsNAC5%2C NAC71%2C ONAC071%2C ONAC009%2C ONAC9%2C ONAC020%2C ONAC20%2C OnNAC5*%2C OnNAC5%2C OsNAC5/ONAC009;RAP-DB Gene Name Synonym(s)=NAC DOMAIN-CONTAINING PROTEIN 5%2C NAC 5%2C NAC domain-containing protein 71%2C ONNAC GENE 5%2C OsNAC gene-5%2C NAC domain-containing protein 9%2C NAC domain-containing protein 20%2C OnNAC gene-5;CGSNL Gene Symbol=NAC5;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 5;Oryzabase Gene Symbol Synonym(s)=OsNAC5%2C NAC71%2C ONAC071%2C ONAC009%2C ONAC9%2C ONAC020%2C ONAC20%2C OnNAC5*%2C OnNAC5%2C OsNAC5/ONAC009;Oryzabase Gene Name Synonym(s)=NAC 5%2C NAC domain-containing protein 71%2C ONNAC GENE 5%2C OsNAC gene-5%2C NAC domain-containing protein 9%2C NAC domain-containing protein 20%2C OnNAC gene-5;Note=NAC-type transcription factor%2C Regulation of stress-inducible genes%2C Stress tolerance;Transcript_evidence=AB028184,AK063399,AK102475;ORF_evidence=Q53NF7;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=NAC domain (IPR003441);NIAS_FLcDNA=001-114-H12, J033094I01;Manual Curation=February 26%2C 2016;Literature_PMID=20632034,10660065;Oryzabase=2261;Expression=AK063399;TENOR=Os11t0184900-02;KEGG=Os11t0184900-02
Chr11	irgsp1_rep	five_prime_UTR	4301686	4301783	.	-	.	Parent=Os11t0184900-02
Chr11	irgsp1_rep	CDS	4301520	4301685	.	-	0	Parent=Os11t0184900-02
Chr11	irgsp1_rep	CDS	4301135	4301430	.	-	2	Parent=Os11t0184900-02
Chr11	irgsp1_rep	CDS	4300059	4300586	.	-	0	Parent=Os11t0184900-02
Chr11	irgsp1_rep	three_prime_UTR	4299277	4300058	.	-	.	Parent=Os11t0184900-02
Chr11	irgsp1_rep	mRNA	4315043	4315615	.	+	.	ID=Os11t0185100-01;Name=Os11t0185100-01;Locus_id=Os11g0185100;Note=Conserved hypothetical protein.;Transcript_evidence=AK107866 (DDBJ%2C Best hit);ORF_evidence=B8BJH5 (UniProt);NIAS_FLcDNA=002-134-C02;Expression=AK107866;TENOR=Os11t0185100-01;KEGG=Os11t0185100-01
Chr11	irgsp1_rep	five_prime_UTR	4315043	4315123	.	+	.	Parent=Os11t0185100-01
Chr11	irgsp1_rep	CDS	4315124	4315465	.	+	0	Parent=Os11t0185100-01
Chr11	irgsp1_rep	three_prime_UTR	4315466	4315615	.	+	.	Parent=Os11t0185100-01
Chr11	irgsp1_rep	mRNA	4351277	4353991	.	-	.	ID=Os11t0185800-01;Name=Os11t0185800-01;Locus_id=Os11g0185800;Note=Conserved hypothetical protein.;Transcript_evidence=AK111265 (DDBJ%2C Best hit);ORF_evidence=NP_001176870.1 (RefSeq);NIAS_FLcDNA=002-180-F06;Expression=AK111265;TENOR=Os11t0185800-01;KEGG=Os11t0185800-01
Chr11	irgsp1_rep	five_prime_UTR	4353813	4353991	.	-	.	Parent=Os11t0185800-01
Chr11	irgsp1_rep	CDS	4353651	4353812	.	-	0	Parent=Os11t0185800-01
Chr11	irgsp1_rep	three_prime_UTR	4353650	4353650	.	-	.	Parent=Os11t0185800-01
Chr11	irgsp1_rep	three_prime_UTR	4352964	4353028	.	-	.	Parent=Os11t0185800-01
Chr11	irgsp1_rep	three_prime_UTR	4352437	4352510	.	-	.	Parent=Os11t0185800-01
Chr11	irgsp1_rep	three_prime_UTR	4351277	4351620	.	-	.	Parent=Os11t0185800-01
Chr11	irgsp1_rep	mRNA	4355110	4355880	.	+	.	ID=Os11t0186050-00;Name=Os11t0186050-00;Locus_id=Os11g0186050;Note=Hypothetical protein.;Transcript_evidence=CT835681 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os11t0186050-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	4355110	4355223	.	+	0	Parent=Os11t0186050-00
Chr11	irgsp1_rep	CDS	4355270	4355386	.	+	0	Parent=Os11t0186050-00
Chr11	irgsp1_rep	three_prime_UTR	4355387	4355880	.	+	.	Parent=Os11t0186050-00
Chr11	irgsp1_rep	mRNA	4375371	4379958	.	+	.	ID=Os11t0186200-01;Name=Os11t0186200-01;Locus_id=Os11g0186200;CGSNL Gene Symbol=ALDH3H2;CGSNL Gene Name=ALDEHYDE DEHYDROGENASE 3H2;Oryzabase Gene Symbol Synonym(s)=OsALDH3H2;Oryzabase Gene Name Synonym(s)=Aldehyde dehydrogenase 3H2;Note=Similar to Aldehyde dehydrogenase (EC 1.2.1.3).;Transcript_evidence=AK104603 (DDBJ%2C Best hit),AK104746 (DDBJ%2C Best hit);ORF_evidence=B8BJI2 (UniProt);GO=Biological Process: cellular aldehyde metabolic process (GO:0006081),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: aldehyde dehydrogenase [NAD(P)+] activity (GO:0004030),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620);InterPro=Aldehyde dehydrogenase NAD(P)-dependent (IPR012394),Aldehyde dehydrogenase domain (IPR015590),Aldehyde/histidinol dehydrogenase (IPR016161),Aldehyde dehydrogenase%2C N-terminal (IPR016162),Aldehyde dehydrogenase%2C C-terminal (IPR016163);NIAS_FLcDNA=006-308-H06,001-038-E07;Oryzabase=22114;Expression=AK104603;TENOR=Os11t0186200-01;KEGG=Os11t0186200-01 (EC:1.2.1.3)
Chr11	irgsp1_rep	five_prime_UTR	4375371	4375458	.	+	.	Parent=Os11t0186200-01
Chr11	irgsp1_rep	CDS	4375459	4375653	.	+	0	Parent=Os11t0186200-01
Chr11	irgsp1_rep	CDS	4376889	4376957	.	+	0	Parent=Os11t0186200-01
Chr11	irgsp1_rep	CDS	4377067	4377163	.	+	0	Parent=Os11t0186200-01
Chr11	irgsp1_rep	CDS	4377850	4378056	.	+	2	Parent=Os11t0186200-01
Chr11	irgsp1_rep	CDS	4378203	4378318	.	+	2	Parent=Os11t0186200-01
Chr11	irgsp1_rep	CDS	4378416	4378520	.	+	0	Parent=Os11t0186200-01
Chr11	irgsp1_rep	CDS	4378610	4378782	.	+	0	Parent=Os11t0186200-01
Chr11	irgsp1_rep	CDS	4378875	4378965	.	+	1	Parent=Os11t0186200-01
Chr11	irgsp1_rep	CDS	4379284	4379433	.	+	0	Parent=Os11t0186200-01
Chr11	irgsp1_rep	CDS	4379530	4379775	.	+	0	Parent=Os11t0186200-01
Chr11	irgsp1_rep	three_prime_UTR	4379776	4379958	.	+	.	Parent=Os11t0186200-01
Chr11	irgsp1_rep	mRNA	4380785	4387385	.	+	.	ID=Os11t0186300-01;Name=Os11t0186300-01;Locus_id=Os11g0186300;Note=Similar to Ankyrin-like protein.;Transcript_evidence=AK109545 (DDBJ%2C Best hit);ORF_evidence=B9G9S2 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Protein of unknown function DUF248%2C methyltransferase putative (IPR004159);NIAS_FLcDNA=002-120-E05;Expression=AK109545;TENOR=Os11t0186300-01;KEGG=Os11t0186300-01
Chr11	irgsp1_rep	five_prime_UTR	4380785	4380889	.	+	.	Parent=Os11t0186300-01
Chr11	irgsp1_rep	five_prime_UTR	4381143	4381241	.	+	.	Parent=Os11t0186300-01
Chr11	irgsp1_rep	CDS	4381242	4382988	.	+	0	Parent=Os11t0186300-01
Chr11	irgsp1_rep	CDS	4383075	4383249	.	+	2	Parent=Os11t0186300-01
Chr11	irgsp1_rep	CDS	4385683	4385955	.	+	1	Parent=Os11t0186300-01
Chr11	irgsp1_rep	CDS	4386084	4386278	.	+	1	Parent=Os11t0186300-01
Chr11	irgsp1_rep	CDS	4386965	4387178	.	+	1	Parent=Os11t0186300-01
Chr11	irgsp1_rep	three_prime_UTR	4387179	4387385	.	+	.	Parent=Os11t0186300-01
Chr11	irgsp1_rep	mRNA	4387512	4397808	.	-	.	ID=Os11t0186400-00;Name=Os11t0186400-00;Locus_id=Os11g0186400;CGSNL Gene Symbol=POLD1;CGSNL Gene Name=POLYMERASE (DNA DIRECTED)%2C DELTA 1;Oryzabase Gene Symbol Synonym(s)=OsPoldelta1%2C OspolD1;Oryzabase Gene Name Synonym(s)=pol delta catalytic subunit%2C DNA polymerase delta 1%2C OsPol delta large subunit;Note=Similar to DNA polymerase delta catalytic subunit (EC 2.7.7.7).;Transcript_evidence=AB037899 (DDBJ%2C Best hit);ORF_evidence=Q9LRE6 (UniProt);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Biological Process: DNA replication (GO:0006260),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed DNA polymerase activity (GO:0003887);InterPro=DNA-directed DNA polymerase%2C family B%2C pol2 (IPR004578),DNA-directed DNA polymerase%2C family B%2C exonuclease domain (IPR006133),DNA-directed DNA polymerase%2C family B%2C multifunctional domain (IPR006134),DNA-directed DNA polymerase%2C family B (IPR006172),Ribonuclease H-like (IPR012337),DNA-directed DNA polymerase%2C family B%2C conserved site (IPR017964),DNA polymerase%2C palm domain (IPR023211);Oryzabase=14516;Expression=AB037899;TENOR=Os11t0186400-00;KEGG=Os11t0186400-00 (EC:2.7.7.7)
Chr11	irgsp1_rep	five_prime_UTR	4397762	4397808	.	-	.	Parent=Os11t0186400-00
Chr11	irgsp1_rep	CDS	4397452	4397761	.	-	0	Parent=Os11t0186400-00
Chr11	irgsp1_rep	CDS	4395751	4395861	.	-	2	Parent=Os11t0186400-00
Chr11	irgsp1_rep	CDS	4395552	4395658	.	-	2	Parent=Os11t0186400-00
Chr11	irgsp1_rep	CDS	4395292	4395451	.	-	0	Parent=Os11t0186400-00
Chr11	irgsp1_rep	CDS	4394854	4395049	.	-	2	Parent=Os11t0186400-00
Chr11	irgsp1_rep	CDS	4394631	4394766	.	-	1	Parent=Os11t0186400-00
Chr11	irgsp1_rep	CDS	4394387	4394524	.	-	0	Parent=Os11t0186400-00
Chr11	irgsp1_rep	CDS	4394233	4394310	.	-	0	Parent=Os11t0186400-00
Chr11	irgsp1_rep	CDS	4394057	4394148	.	-	0	Parent=Os11t0186400-00
Chr11	irgsp1_rep	CDS	4393045	4393111	.	-	1	Parent=Os11t0186400-00
Chr11	irgsp1_rep	CDS	4392878	4392949	.	-	0	Parent=Os11t0186400-00
Chr11	irgsp1_rep	CDS	4392542	4392628	.	-	0	Parent=Os11t0186400-00
Chr11	irgsp1_rep	CDS	4391710	4391829	.	-	0	Parent=Os11t0186400-00
Chr11	irgsp1_rep	CDS	4391543	4391641	.	-	0	Parent=Os11t0186400-00
Chr11	irgsp1_rep	CDS	4391061	4391168	.	-	0	Parent=Os11t0186400-00
Chr11	irgsp1_rep	CDS	4390856	4390951	.	-	0	Parent=Os11t0186400-00
Chr11	irgsp1_rep	CDS	4390713	4390778	.	-	0	Parent=Os11t0186400-00
Chr11	irgsp1_rep	CDS	4390543	4390599	.	-	0	Parent=Os11t0186400-00
Chr11	irgsp1_rep	CDS	4390357	4390444	.	-	0	Parent=Os11t0186400-00
Chr11	irgsp1_rep	CDS	4390184	4390263	.	-	2	Parent=Os11t0186400-00
Chr11	irgsp1_rep	CDS	4389876	4389989	.	-	0	Parent=Os11t0186400-00
Chr11	irgsp1_rep	CDS	4389566	4389680	.	-	0	Parent=Os11t0186400-00
Chr11	irgsp1_rep	CDS	4389321	4389493	.	-	2	Parent=Os11t0186400-00
Chr11	irgsp1_rep	CDS	4389171	4389242	.	-	0	Parent=Os11t0186400-00
Chr11	irgsp1_rep	CDS	4389008	4389082	.	-	0	Parent=Os11t0186400-00
Chr11	irgsp1_rep	CDS	4388835	4388924	.	-	0	Parent=Os11t0186400-00
Chr11	irgsp1_rep	CDS	4388602	4388762	.	-	0	Parent=Os11t0186400-00
Chr11	irgsp1_rep	CDS	4388197	4388270	.	-	1	Parent=Os11t0186400-00
Chr11	irgsp1_rep	CDS	4388029	4388116	.	-	2	Parent=Os11t0186400-00
Chr11	irgsp1_rep	CDS	4387835	4387922	.	-	1	Parent=Os11t0186400-00
Chr11	irgsp1_rep	three_prime_UTR	4387512	4387834	.	-	.	Parent=Os11t0186400-00
Chr11	irgsp1_rep	mRNA	4401451	4403522	.	+	.	ID=Os11t0186500-00;Name=Os11t0186500-00;Locus_id=Os11g0186500;CGSNL Gene Symbol=JAR3;CGSNL Gene Name=JASMONYL-L-ISOLEUCINE SYNTHASE 3;Oryzabase Gene Symbol Synonym(s)=OsJAR3%2C OsGH3.12%2C GH3.12%2C OsGH3-12%2C GH3-12;Oryzabase Gene Name Synonym(s)=jasmonyl-L-isoleucine synthase 3%2C Gretchen Hagen 3.12;Note=Similar to GH3 auxin-responsive promoter family protein.;Transcript_evidence=AK354087 (DDBJ);ORF_evidence=A1BNG5 (UniProt);InterPro=GH3 auxin-responsive promoter (IPR004993);Oryzabase=9298;TENOR=Os11t0186500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	4401451	4401491	.	+	.	Parent=Os11t0186500-00
Chr11	irgsp1_rep	CDS	4401492	4401796	.	+	0	Parent=Os11t0186500-00
Chr11	irgsp1_rep	CDS	4401888	4401989	.	+	1	Parent=Os11t0186500-00
Chr11	irgsp1_rep	CDS	4402088	4403522	.	+	1	Parent=Os11t0186500-00
Chr11	irgsp1_rep	mRNA	4401526	4403438	.	-	.	ID=Os11t0186525-00;Name=Os11t0186525-00;Locus_id=Os11g0186525;Note=Hypothetical protein.;Transcript_evidence=tplb0045h20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0186525-00
Chr11	irgsp1_rep	CDS	4402695	4403438	.	-	0	Parent=Os11t0186525-00
Chr11	irgsp1_rep	three_prime_UTR	4401976	4402694	.	-	.	Parent=Os11t0186525-00
Chr11	irgsp1_rep	three_prime_UTR	4401526	4401791	.	-	.	Parent=Os11t0186525-00
Chr11	irgsp1_rep	mRNA	4408579	4409229	.	-	.	ID=Os11t0186600-00;Name=Os11t0186600-00;Locus_id=Os11g0186600;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK331346 (DDBJ);ORF_evidence=B8BJI5 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Tetratricopeptide-like helical (IPR011990);TENOR=Os11t0186600-00
Chr11	irgsp1_rep	CDS	4408579	4409229	.	-	0	Parent=Os11t0186600-00
Chr11	irgsp1_rep	mRNA	4413240	4415867	.	+	.	ID=Os11t0186800-01;Name=Os11t0186800-01;Locus_id=Os11g0186800;CGSNL Gene Symbol=PT25;CGSNL Gene Name=PHOSPHATE TRANSPORTER 25;Oryzabase Gene Symbol Synonym(s)=OsPT25;Oryzabase Gene Name Synonym(s)=phosphate transporter 25;Note=Similar to inorganic phosphate cotransporter.;Transcript_evidence=AK121325 (DDBJ%2C Best hit);ORF_evidence=NP_001148973.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J023117E05;Oryzabase=21407;TENOR=Os11t0186800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	4413240	4413572	.	+	.	Parent=Os11t0186800-01
Chr11	irgsp1_rep	five_prime_UTR	4414108	4414331	.	+	.	Parent=Os11t0186800-01
Chr11	irgsp1_rep	CDS	4414332	4415642	.	+	0	Parent=Os11t0186800-01
Chr11	irgsp1_rep	three_prime_UTR	4415643	4415867	.	+	.	Parent=Os11t0186800-01
Chr11	irgsp1_rep	mRNA	4415933	4418435	.	-	.	ID=Os11t0186900-01;Name=Os11t0186900-01;Locus_id=Os11g0186900;RAP-DB Gene Symbol Synonym(s)=ACO4%2C OsACO4;RAP-DB Gene Name Synonym(s)=AMINOCYCLOPROPANE-1-CARBOXYLIC ACID OXIDASE 4%2C ACC oxidase 4;CGSNL Gene Symbol=ACO4;CGSNL Gene Name=AMINOCYCLOPROPANE-1-CARBOXYLIC ACID OXIDASE 4;Oryzabase Gene Symbol Synonym(s)=OsACO4;Oryzabase Gene Name Synonym(s)=ACC oxidase 4;Note=ACC oxidase%2C Ethylene biosynthesis;Transcript_evidence=AK105491;ORF_evidence=Q53P53;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Isopenicillin N synthase-like (IPR027443),Non-haem dioxygenase N-terminal domain (IPR026992),Oxoglutarate/iron-dependent dioxygenase (IPR005123);NIAS_FLcDNA=001-127-C01;Manual Curation=November 26%2C 2009;Literature_PMID=17012402;Oryzabase=9074;Expression=AK105491;TENOR=Os11t0186900-01;KEGG=Os11t0186900-01 (EC:1.14.17.4)
Chr11	irgsp1_rep	five_prime_UTR	4418312	4418435	.	-	.	Parent=Os11t0186900-01
Chr11	irgsp1_rep	CDS	4418210	4418311	.	-	0	Parent=Os11t0186900-01
Chr11	irgsp1_rep	CDS	4417868	4418106	.	-	0	Parent=Os11t0186900-01
Chr11	irgsp1_rep	CDS	4417301	4417652	.	-	1	Parent=Os11t0186900-01
Chr11	irgsp1_rep	CDS	4416352	4416588	.	-	0	Parent=Os11t0186900-01
Chr11	irgsp1_rep	three_prime_UTR	4415933	4416351	.	-	.	Parent=Os11t0186900-01
Chr11	irgsp1_rep	mRNA	4416365	4417668	.	+	.	ID=Os11t0187001-00;Name=Os11t0187001-00;Locus_id=Os11g0187001;Note=Hypothetical gene.;Transcript_evidence=tplb0008n13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0187001-00
Chr11	irgsp1_rep	five_prime_UTR	4416365	4416366	.	+	.	Parent=Os11t0187001-00
Chr11	irgsp1_rep	CDS	4416367	4416584	.	+	0	Parent=Os11t0187001-00
Chr11	irgsp1_rep	CDS	4417297	4417668	.	+	1	Parent=Os11t0187001-00
Chr11	irgsp1_rep	mRNA	4428082	4431404	.	-	.	ID=Os11t0187100-00;Name=Os11t0187100-00;Locus_id=Os11g0187100;Oryzabase Gene Symbol Synonym(s)=OsWD40-185%2C OsSTA253;Note=WD40 repeat domain containing protein.;Transcript_evidence=AK369075 (DDBJ);ORF_evidence=NP_001176393.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);Oryzabase=10866;TENOR=Os11t0187100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	4429605	4431404	.	-	0	Parent=Os11t0187100-00
Chr11	irgsp1_rep	CDS	4429428	4429518	.	-	0	Parent=Os11t0187100-00
Chr11	irgsp1_rep	CDS	4429172	4429329	.	-	2	Parent=Os11t0187100-00
Chr11	irgsp1_rep	CDS	4428946	4429083	.	-	0	Parent=Os11t0187100-00
Chr11	irgsp1_rep	CDS	4428779	4428872	.	-	0	Parent=Os11t0187100-00
Chr11	irgsp1_rep	CDS	4428082	4428644	.	-	2	Parent=Os11t0187100-00
Chr11	irgsp1_rep	mRNA	4430512	4432986	.	+	.	ID=Os11t0187150-00;Name=Os11t0187150-00;Locus_id=Os11g0187150;Note=Hypothetical protein.;Transcript_evidence=BT061503 (DDBJ);ORF_evidence=GeneMark;TENOR=Os11t0187150-00
Chr11	irgsp1_rep	CDS	4430512	4430840	.	+	0	Parent=Os11t0187150-00
Chr11	irgsp1_rep	CDS	4432803	4432986	.	+	1	Parent=Os11t0187150-00
Chr11	irgsp1_rep	mRNA	4432745	4434088	.	-	.	ID=Os11t0187200-01;Name=Os11t0187200-01;Locus_id=Os11g0187200;RAP-DB Gene Symbol Synonym(s)=OsGATA28;CGSNL Gene Symbol=GATA28;CGSNL Gene Name=GATA TRANSCRIPTION FACTOR 28;Oryzabase Gene Symbol Synonym(s)=OsGATA28;Oryzabase Gene Name Synonym(s)=GATA transcription factor 28%2C GATA factor 28;Note=GATA zinc finger family protein%2C Control of heading date%2C plant height and panicle length;Transcript_evidence=EU972972;ORF_evidence=Q53P56;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Zinc finger%2C NHR/GATA-type (IPR013088),Zinc finger%2C GATA-type (IPR000679);Manual Curation=August 31%2C 2017;Literature_PMID=27322545,15084732;Oryzabase=20506;TENOR=Os11t0187200-00
Chr11	irgsp1_rep	five_prime_UTR	4434072	4434088	.	-	.	Parent=Os11t0187200-01
Chr11	irgsp1_rep	CDS	4432776	4434071	.	-	0	Parent=Os11t0187200-01
Chr11	irgsp1_rep	three_prime_UTR	4432745	4432775	.	-	.	Parent=Os11t0187200-01
Chr11	irgsp1_rep	mRNA	4443167	4446247	.	+	.	ID=Os11t0187500-01;Name=Os11t0187500-01;Locus_id=Os11g0187500;Note=Similar to Heat shock protein 70.;Transcript_evidence=AK063977 (DDBJ%2C Best hit);ORF_evidence=Q53P65 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Heat shock protein Hsp70 (IPR001023),Heat shock protein 70 (IPR013126),Heat shock protein 70%2C conserved site (IPR018181);NIAS_FLcDNA=001-124-C07;Expression=AK063977;TENOR=Os11t0187500-01;KEGG=Os11t0187500-01
Chr11	irgsp1_rep	five_prime_UTR	4443167	4443210	.	+	.	Parent=Os11t0187500-01
Chr11	irgsp1_rep	CDS	4443211	4443448	.	+	0	Parent=Os11t0187500-01
Chr11	irgsp1_rep	CDS	4444273	4445734	.	+	2	Parent=Os11t0187500-01
Chr11	irgsp1_rep	CDS	4446004	4446037	.	+	1	Parent=Os11t0187500-01
Chr11	irgsp1_rep	three_prime_UTR	4446038	4446247	.	+	.	Parent=Os11t0187500-01
Chr11	irgsp1_rep	mRNA	4443203	4446191	.	+	.	ID=Os11t0187500-02;Name=Os11t0187500-02;Locus_id=Os11g0187500;Note=Similar to Heat shock protein 70.;Transcript_evidence=AK103083 (DDBJ%2C Best hit);ORF_evidence=Q53P65 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Heat shock protein Hsp70 (IPR001023),Heat shock protein 70 (IPR013126),Heat shock protein 70%2C conserved site (IPR018181);NIAS_FLcDNA=J033118G15;Expression=AK103083;TENOR=Os11t0187500-02;KEGG=Os11t0187500-02
Chr11	irgsp1_rep	five_prime_UTR	4443203	4443210	.	+	.	Parent=Os11t0187500-02
Chr11	irgsp1_rep	CDS	4443211	4443448	.	+	0	Parent=Os11t0187500-02
Chr11	irgsp1_rep	CDS	4444273	4445734	.	+	2	Parent=Os11t0187500-02
Chr11	irgsp1_rep	CDS	4446004	4446037	.	+	1	Parent=Os11t0187500-02
Chr11	irgsp1_rep	three_prime_UTR	4446038	4446191	.	+	.	Parent=Os11t0187500-02
Chr11	irgsp1_rep	mRNA	4458588	4458924	.	-	.	ID=Os11t0187550-00;Name=Os11t0187550-00;Locus_id=Os11g0187550;Note=Non-protein coding transcript.;Transcript_evidence=BT086887 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0187550-00
Chr11	irgsp1_rep	exon	4458588	4458924	.	-	.	Parent=Os11t0187550-00
Chr11	irgsp1_rep	mRNA	4466448	4468314	.	-	.	ID=Os11t0187600-01;Name=Os11t0187600-01;Locus_id=Os11g0187600;Oryzabase Gene Symbol Synonym(s)=OsHSP70%2C hsp70;Oryzabase Gene Name Synonym(s)=heat shock protein 70%2C heat-shock protein 70%2C HEAT SHOCK PROTEIN 70KD;Note=Similar to Heat shock protein 70.;Transcript_evidence=AK106272 (DDBJ%2C Best hit);ORF_evidence=Q9M4E7 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Heat shock protein Hsp70 (IPR001023),Heat shock protein 70 (IPR013126),Heat shock protein 70%2C conserved site (IPR018181);NIAS_FLcDNA=002-100-G10;Oryzabase=18152;Expression=AK106272;TENOR=Os11t0187600-01;KEGG=Os11t0187600-01
Chr11	irgsp1_rep	five_prime_UTR	4468253	4468314	.	-	.	Parent=Os11t0187600-01
Chr11	irgsp1_rep	CDS	4468225	4468252	.	-	0	Parent=Os11t0187600-01
Chr11	irgsp1_rep	CDS	4466680	4468121	.	-	2	Parent=Os11t0187600-01
Chr11	irgsp1_rep	three_prime_UTR	4466448	4466679	.	-	.	Parent=Os11t0187600-01
Chr11	irgsp1_rep	mRNA	4469056	4469313	.	-	.	ID=Os11t0187700-00;Name=Os11t0187700-00;Locus_id=Os11g0187700;Oryzabase Gene Symbol Synonym(s)=OsHSP70%2C hsp70;Oryzabase Gene Name Synonym(s)=heat shock protein 70%2C heat-shock protein 70%2C HEAT SHOCK PROTEIN 70KD;Note=Similar to Heat shock protein 70.;Transcript_evidence=ab initio prediction;ORF_evidence=B3GPH1 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Heat shock protein Hsp70 (IPR001023),Heat shock protein 70 (IPR013126),Heat shock protein 70%2C conserved site (IPR018181);Oryzabase=18152;TENOR=Os11t0187700-00
Chr11	irgsp1_rep	CDS	4469056	4469313	.	-	0	Parent=Os11t0187700-00
Chr11	irgsp1_rep	mRNA	4481564	4482675	.	+	.	ID=Os11t0188100-00;Name=Os11t0188100-00;Locus_id=Os11g0188100;Note=Similar to inositol or phosphatidylinositol kinase/ phosphotransferase%2C alcohol group as acceptor.;Transcript_evidence=AK332637 (DDBJ);ORF_evidence=NP_191219.2 (RefSeq);GO=Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Phosphatidylinositol 3-/4-kinase%2C catalytic (IPR000403);TENOR=Os11t0188100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	4481564	4481759	.	+	.	Parent=Os11t0188100-00
Chr11	irgsp1_rep	five_prime_UTR	4481843	4482142	.	+	.	Parent=Os11t0188100-00
Chr11	irgsp1_rep	CDS	4482143	4482160	.	+	0	Parent=Os11t0188100-00
Chr11	irgsp1_rep	CDS	4482244	4482675	.	+	0	Parent=Os11t0188100-00
Chr11	irgsp1_rep	mRNA	4522342	4557876	.	+	.	ID=Os11t0189600-01;Name=Os11t0189600-01;Locus_id=Os11g0189600;RAP-DB Gene Symbol Synonym(s)=OsOSC7%2C OsPS;RAP-DB Gene Name Synonym(s)=oxidosqualene cyclase 7;Oryzabase Gene Symbol Synonym(s)=OsOSC7%2C OSC7%2C OsPS%2C PS%2C OsOSC7/OsPS%2C OsOSC7i%2C OsOSC7j;Oryzabase Gene Name Synonym(s)=oxidosqualene cyclase 7%2C "2%2C 3-oxidosqualene cyclase 7"%2C parkeol synthase;Note=2%2C3-oxidosqualene cyclase%2C Triterpene synthase%2C Parkeol synthase;Transcript_evidence=AK066327;ORF_evidence=H2KWF1;GO=Molecular Function: intramolecular transferase activity (GO:0016866);InterPro=Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid (IPR008930),Squalene cyclase (IPR018333),Squalene cyclase%2C N-terminal (IPR032697),Squalene cyclase%2C C-terminal (IPR032696),Terpene synthase%2C conserved site (IPR002365);NIAS_FLcDNA=J013062J12;Manual Curation=March 26%2C 2018;Literature_PMID=29528490,22150097;Oryzabase=10202;TENOR=Os11t0189600-01;KEGG=Os11t0189600-01 (EC:5.4.99.47)
Chr11	irgsp1_rep	five_prime_UTR	4522342	4522442	.	+	.	Parent=Os11t0189600-01
Chr11	irgsp1_rep	CDS	4522443	4522640	.	+	0	Parent=Os11t0189600-01
Chr11	irgsp1_rep	CDS	4523065	4523250	.	+	0	Parent=Os11t0189600-01
Chr11	irgsp1_rep	CDS	4526689	4526775	.	+	0	Parent=Os11t0189600-01
Chr11	irgsp1_rep	CDS	4527223	4527420	.	+	0	Parent=Os11t0189600-01
Chr11	irgsp1_rep	CDS	4527529	4527613	.	+	0	Parent=Os11t0189600-01
Chr11	irgsp1_rep	CDS	4528760	4528926	.	+	2	Parent=Os11t0189600-01
Chr11	irgsp1_rep	CDS	4532276	4532464	.	+	0	Parent=Os11t0189600-01
Chr11	irgsp1_rep	CDS	4545956	4546069	.	+	0	Parent=Os11t0189600-01
Chr11	irgsp1_rep	CDS	4547915	4548037	.	+	0	Parent=Os11t0189600-01
Chr11	irgsp1_rep	CDS	4548148	4548270	.	+	0	Parent=Os11t0189600-01
Chr11	irgsp1_rep	CDS	4550758	4550856	.	+	0	Parent=Os11t0189600-01
Chr11	irgsp1_rep	CDS	4550985	4551041	.	+	0	Parent=Os11t0189600-01
Chr11	irgsp1_rep	CDS	4551583	4551629	.	+	0	Parent=Os11t0189600-01
Chr11	irgsp1_rep	CDS	4551726	4551869	.	+	1	Parent=Os11t0189600-01
Chr11	irgsp1_rep	CDS	4551969	4552146	.	+	1	Parent=Os11t0189600-01
Chr11	irgsp1_rep	CDS	4554020	4554100	.	+	0	Parent=Os11t0189600-01
Chr11	irgsp1_rep	CDS	4554173	4554256	.	+	0	Parent=Os11t0189600-01
Chr11	irgsp1_rep	CDS	4557561	4557680	.	+	0	Parent=Os11t0189600-01
Chr11	irgsp1_rep	three_prime_UTR	4557681	4557876	.	+	.	Parent=Os11t0189600-01
Chr11	irgsp1_rep	mRNA	4522486	4557911	.	+	.	ID=Os11t0189600-02;Name=Os11t0189600-02;Locus_id=Os11g0189600;Oryzabase Gene Symbol Synonym(s)=OsOSC7%2C OSC7%2C OsPS%2C PS%2C OsOSC7/OsPS%2C OsOSC7i%2C OsOSC7j;Oryzabase Gene Name Synonym(s)=oxidosqualene cyclase 7%2C "2%2C 3-oxidosqualene cyclase 7"%2C parkeol synthase;Note=Similar to cDNA clone:J013062J12%2C full insert sequence.;Transcript_evidence=AK068026 (DDBJ%2C Best hit);ORF_evidence=B7EC17 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: intramolecular transferase activity (GO:0016866);InterPro=Prenyltransferase/squalene oxidase (IPR001330),Terpene synthase%2C conserved site (IPR002365),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930),Squalene cyclase (IPR018333);NIAS_FLcDNA=J013131K12;Oryzabase=10202;TENOR=Os11t0189600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	4522486	4522640	.	+	.	Parent=Os11t0189600-02
Chr11	irgsp1_rep	five_prime_UTR	4522735	4522826	.	+	.	Parent=Os11t0189600-02
Chr11	irgsp1_rep	five_prime_UTR	4523065	4523130	.	+	.	Parent=Os11t0189600-02
Chr11	irgsp1_rep	CDS	4523131	4523250	.	+	0	Parent=Os11t0189600-02
Chr11	irgsp1_rep	CDS	4526689	4526775	.	+	0	Parent=Os11t0189600-02
Chr11	irgsp1_rep	CDS	4527223	4527420	.	+	0	Parent=Os11t0189600-02
Chr11	irgsp1_rep	CDS	4527529	4527613	.	+	0	Parent=Os11t0189600-02
Chr11	irgsp1_rep	CDS	4528760	4528926	.	+	2	Parent=Os11t0189600-02
Chr11	irgsp1_rep	CDS	4532276	4532464	.	+	0	Parent=Os11t0189600-02
Chr11	irgsp1_rep	CDS	4545956	4546069	.	+	0	Parent=Os11t0189600-02
Chr11	irgsp1_rep	CDS	4547915	4548037	.	+	0	Parent=Os11t0189600-02
Chr11	irgsp1_rep	CDS	4548148	4548270	.	+	0	Parent=Os11t0189600-02
Chr11	irgsp1_rep	CDS	4550758	4550856	.	+	0	Parent=Os11t0189600-02
Chr11	irgsp1_rep	CDS	4550985	4551041	.	+	0	Parent=Os11t0189600-02
Chr11	irgsp1_rep	CDS	4551583	4551629	.	+	0	Parent=Os11t0189600-02
Chr11	irgsp1_rep	CDS	4551726	4551869	.	+	1	Parent=Os11t0189600-02
Chr11	irgsp1_rep	CDS	4551969	4552146	.	+	1	Parent=Os11t0189600-02
Chr11	irgsp1_rep	CDS	4554020	4554100	.	+	0	Parent=Os11t0189600-02
Chr11	irgsp1_rep	CDS	4554173	4554256	.	+	0	Parent=Os11t0189600-02
Chr11	irgsp1_rep	CDS	4557561	4557680	.	+	0	Parent=Os11t0189600-02
Chr11	irgsp1_rep	three_prime_UTR	4557681	4557911	.	+	.	Parent=Os11t0189600-02
Chr11	irgsp1_rep	mRNA	4557930	4566087	.	-	.	ID=Os11t0189900-00;Name=Os11t0189900-00;Locus_id=Os11g0189900;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001176397.1 (RefSeq);TENOR=Os11t0189900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	4566085	4566087	.	-	0	Parent=Os11t0189900-00
Chr11	irgsp1_rep	CDS	4565855	4566002	.	-	0	Parent=Os11t0189900-00
Chr11	irgsp1_rep	CDS	4564336	4564390	.	-	2	Parent=Os11t0189900-00
Chr11	irgsp1_rep	CDS	4564096	4564258	.	-	1	Parent=Os11t0189900-00
Chr11	irgsp1_rep	CDS	4561546	4561605	.	-	0	Parent=Os11t0189900-00
Chr11	irgsp1_rep	CDS	4561024	4561099	.	-	0	Parent=Os11t0189900-00
Chr11	irgsp1_rep	CDS	4559162	4559267	.	-	2	Parent=Os11t0189900-00
Chr11	irgsp1_rep	CDS	4557930	4558047	.	-	1	Parent=Os11t0189900-00
Chr11	irgsp1_rep	mRNA	4614154	4623344	.	+	.	ID=Os11t0191300-01;Name=Os11t0191300-01;Locus_id=Os11g0191300;Note=Similar to MEI1 protein.;Transcript_evidence=AK101281 (DDBJ%2C Best hit);ORF_evidence=B7EHL9 (UniProt);GO=Cellular Component: intracellular (GO:0005622);InterPro=BRCT (IPR001357);NIAS_FLcDNA=J033033D02;Expression=AK101281;TENOR=Os11t0191300-01;KEGG=Os11t0191300-01
Chr11	irgsp1_rep	five_prime_UTR	4614154	4614256	.	+	.	Parent=Os11t0191300-01
Chr11	irgsp1_rep	CDS	4614257	4614490	.	+	0	Parent=Os11t0191300-01
Chr11	irgsp1_rep	CDS	4614609	4614651	.	+	0	Parent=Os11t0191300-01
Chr11	irgsp1_rep	CDS	4616503	4616624	.	+	2	Parent=Os11t0191300-01
Chr11	irgsp1_rep	CDS	4616706	4616813	.	+	0	Parent=Os11t0191300-01
Chr11	irgsp1_rep	CDS	4618134	4618274	.	+	0	Parent=Os11t0191300-01
Chr11	irgsp1_rep	CDS	4618367	4618393	.	+	0	Parent=Os11t0191300-01
Chr11	irgsp1_rep	three_prime_UTR	4618394	4618458	.	+	.	Parent=Os11t0191300-01
Chr11	irgsp1_rep	three_prime_UTR	4618935	4619597	.	+	.	Parent=Os11t0191300-01
Chr11	irgsp1_rep	three_prime_UTR	4619686	4619825	.	+	.	Parent=Os11t0191300-01
Chr11	irgsp1_rep	three_prime_UTR	4619943	4620292	.	+	.	Parent=Os11t0191300-01
Chr11	irgsp1_rep	three_prime_UTR	4620568	4620735	.	+	.	Parent=Os11t0191300-01
Chr11	irgsp1_rep	three_prime_UTR	4620845	4621135	.	+	.	Parent=Os11t0191300-01
Chr11	irgsp1_rep	three_prime_UTR	4621260	4621440	.	+	.	Parent=Os11t0191300-01
Chr11	irgsp1_rep	three_prime_UTR	4621516	4621697	.	+	.	Parent=Os11t0191300-01
Chr11	irgsp1_rep	three_prime_UTR	4621808	4621834	.	+	.	Parent=Os11t0191300-01
Chr11	irgsp1_rep	three_prime_UTR	4621937	4622019	.	+	.	Parent=Os11t0191300-01
Chr11	irgsp1_rep	three_prime_UTR	4622447	4622573	.	+	.	Parent=Os11t0191300-01
Chr11	irgsp1_rep	three_prime_UTR	4622656	4623344	.	+	.	Parent=Os11t0191300-01
Chr11	irgsp1_rep	mRNA	4614156	4622265	.	+	.	ID=Os11t0191300-02;Name=Os11t0191300-02;Locus_id=Os11g0191300;Note=Similar to BRCA1 C Terminus domain containing protein%2C expressed.;Transcript_evidence=AK070280 (DDBJ%2C Best hit);ORF_evidence=Q2R9I2 (UniProt);GO=Cellular Component: intracellular (GO:0005622);InterPro=BRCT (IPR001357);NIAS_FLcDNA=J023047F24;Expression=AK070280;TENOR=Os11t0191300-02;KEGG=Os11t0191300-02
Chr11	irgsp1_rep	five_prime_UTR	4614156	4614256	.	+	.	Parent=Os11t0191300-02
Chr11	irgsp1_rep	CDS	4614257	4614490	.	+	0	Parent=Os11t0191300-02
Chr11	irgsp1_rep	CDS	4614609	4614651	.	+	0	Parent=Os11t0191300-02
Chr11	irgsp1_rep	CDS	4616503	4616624	.	+	2	Parent=Os11t0191300-02
Chr11	irgsp1_rep	CDS	4616706	4616813	.	+	0	Parent=Os11t0191300-02
Chr11	irgsp1_rep	CDS	4618134	4618278	.	+	0	Parent=Os11t0191300-02
Chr11	irgsp1_rep	CDS	4618367	4618458	.	+	2	Parent=Os11t0191300-02
Chr11	irgsp1_rep	CDS	4618935	4619028	.	+	0	Parent=Os11t0191300-02
Chr11	irgsp1_rep	CDS	4619156	4619597	.	+	2	Parent=Os11t0191300-02
Chr11	irgsp1_rep	CDS	4619686	4619825	.	+	1	Parent=Os11t0191300-02
Chr11	irgsp1_rep	CDS	4619943	4620292	.	+	2	Parent=Os11t0191300-02
Chr11	irgsp1_rep	CDS	4620568	4620735	.	+	0	Parent=Os11t0191300-02
Chr11	irgsp1_rep	CDS	4620845	4621135	.	+	0	Parent=Os11t0191300-02
Chr11	irgsp1_rep	CDS	4621260	4621440	.	+	0	Parent=Os11t0191300-02
Chr11	irgsp1_rep	CDS	4621516	4621697	.	+	2	Parent=Os11t0191300-02
Chr11	irgsp1_rep	CDS	4621808	4621834	.	+	0	Parent=Os11t0191300-02
Chr11	irgsp1_rep	CDS	4621937	4622023	.	+	0	Parent=Os11t0191300-02
Chr11	irgsp1_rep	three_prime_UTR	4622024	4622265	.	+	.	Parent=Os11t0191300-02
Chr11	irgsp1_rep	mRNA	4621021	4623369	.	+	.	ID=Os11t0191300-03;Name=Os11t0191300-03;Locus_id=Os11g0191300;Note=Similar to BRCA1 C Terminus domain containing protein%2C expressed.;Transcript_evidence=AK060444 (DDBJ%2C Best hit);ORF_evidence=Q2R9I2 (UniProt);GO=Cellular Component: intracellular (GO:0005622);InterPro=BRCT (IPR001357);NIAS_FLcDNA=001-011-E10;Expression=AK060444;TENOR=Os11t0191300-03;KEGG=Os11t0191300-03
Chr11	irgsp1_rep	five_prime_UTR	4621021	4621021	.	+	.	Parent=Os11t0191300-03
Chr11	irgsp1_rep	CDS	4621022	4621135	.	+	0	Parent=Os11t0191300-03
Chr11	irgsp1_rep	CDS	4621260	4621440	.	+	0	Parent=Os11t0191300-03
Chr11	irgsp1_rep	CDS	4621516	4621697	.	+	2	Parent=Os11t0191300-03
Chr11	irgsp1_rep	CDS	4621808	4621834	.	+	0	Parent=Os11t0191300-03
Chr11	irgsp1_rep	CDS	4621937	4622019	.	+	0	Parent=Os11t0191300-03
Chr11	irgsp1_rep	CDS	4622447	4622573	.	+	1	Parent=Os11t0191300-03
Chr11	irgsp1_rep	CDS	4622656	4622763	.	+	0	Parent=Os11t0191300-03
Chr11	irgsp1_rep	three_prime_UTR	4622764	4623369	.	+	.	Parent=Os11t0191300-03
Chr11	irgsp1_rep	mRNA	4625100	4631084	.	+	.	ID=Os11t0191400-01;Name=Os11t0191400-01;Locus_id=Os11g0191400;Note=ATP-NAD kinase%2C PpnK-type%2C all-beta domain containing protein.;Transcript_evidence=AK065215 (DDBJ%2C Best hit);ORF_evidence=E6NU77 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: NAD+ kinase activity (GO:0003951);InterPro=Inorganic polyphosphate/ATP-NAD kinase%2C predicted (IPR002504),ATP-NAD kinase%2C PpnK-type (IPR016064),ATP-NAD kinase%2C PpnK-type%2C all-beta (IPR017437),ATP-NAD kinase%2C PpnK-type%2C alpha/beta (IPR017438);NIAS_FLcDNA=J013002G06;Expression=AK065215;TENOR=Os11t0191400-01;KEGG=Os11t0191400-01
Chr11	irgsp1_rep	five_prime_UTR	4625100	4625231	.	+	.	Parent=Os11t0191400-01
Chr11	irgsp1_rep	CDS	4625232	4625417	.	+	0	Parent=Os11t0191400-01
Chr11	irgsp1_rep	CDS	4625783	4627675	.	+	0	Parent=Os11t0191400-01
Chr11	irgsp1_rep	CDS	4628433	4628554	.	+	0	Parent=Os11t0191400-01
Chr11	irgsp1_rep	CDS	4628646	4628787	.	+	1	Parent=Os11t0191400-01
Chr11	irgsp1_rep	CDS	4628878	4629099	.	+	0	Parent=Os11t0191400-01
Chr11	irgsp1_rep	CDS	4629648	4629722	.	+	0	Parent=Os11t0191400-01
Chr11	irgsp1_rep	CDS	4630510	4630611	.	+	0	Parent=Os11t0191400-01
Chr11	irgsp1_rep	CDS	4630775	4630978	.	+	0	Parent=Os11t0191400-01
Chr11	irgsp1_rep	three_prime_UTR	4630979	4631084	.	+	.	Parent=Os11t0191400-01
Chr11	irgsp1_rep	mRNA	4626150	4631163	.	+	.	ID=Os11t0191400-02;Name=Os11t0191400-02;Locus_id=Os11g0191400;Note=Similar to predicted protein.;Transcript_evidence=AK101259 (DDBJ%2C Best hit);ORF_evidence=E6NU77 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: NAD+ kinase activity (GO:0003951);InterPro=Inorganic polyphosphate/ATP-NAD kinase%2C predicted (IPR002504),ATP-NAD kinase%2C PpnK-type (IPR016064),ATP-NAD kinase%2C PpnK-type%2C all-beta (IPR017437),ATP-NAD kinase%2C PpnK-type%2C alpha/beta (IPR017438);NIAS_FLcDNA=J033032H18;Expression=AK101259;TENOR=Os11t0191400-02;KEGG=Os11t0191400-02
Chr11	irgsp1_rep	five_prime_UTR	4626150	4626151	.	+	.	Parent=Os11t0191400-02
Chr11	irgsp1_rep	CDS	4626152	4627675	.	+	0	Parent=Os11t0191400-02
Chr11	irgsp1_rep	CDS	4628433	4628554	.	+	0	Parent=Os11t0191400-02
Chr11	irgsp1_rep	CDS	4628646	4628787	.	+	1	Parent=Os11t0191400-02
Chr11	irgsp1_rep	CDS	4628878	4629099	.	+	0	Parent=Os11t0191400-02
Chr11	irgsp1_rep	CDS	4629648	4629722	.	+	0	Parent=Os11t0191400-02
Chr11	irgsp1_rep	CDS	4630510	4630611	.	+	0	Parent=Os11t0191400-02
Chr11	irgsp1_rep	CDS	4630775	4630978	.	+	0	Parent=Os11t0191400-02
Chr11	irgsp1_rep	three_prime_UTR	4630979	4631163	.	+	.	Parent=Os11t0191400-02
Chr11	irgsp1_rep	mRNA	4627433	4631089	.	+	.	ID=Os11t0191400-03;Name=Os11t0191400-03;Locus_id=Os11g0191400;Note=Similar to predicted protein.;Transcript_evidence=AK060751 (DDBJ%2C Best hit);ORF_evidence=E6NU77 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: NAD+ kinase activity (GO:0003951);InterPro=Inorganic polyphosphate/ATP-NAD kinase%2C predicted (IPR002504),ATP-NAD kinase%2C PpnK-type (IPR016064),ATP-NAD kinase%2C PpnK-type%2C all-beta (IPR017437),ATP-NAD kinase%2C PpnK-type%2C alpha/beta (IPR017438);NIAS_FLcDNA=001-032-G04;Expression=AK060751;TENOR=Os11t0191400-03;KEGG=Os11t0191400-03 (EC:2.7.1.23)
Chr11	irgsp1_rep	CDS	4627433	4627675	.	+	0	Parent=Os11t0191400-03
Chr11	irgsp1_rep	CDS	4628433	4628554	.	+	0	Parent=Os11t0191400-03
Chr11	irgsp1_rep	CDS	4628646	4628787	.	+	1	Parent=Os11t0191400-03
Chr11	irgsp1_rep	CDS	4628878	4629099	.	+	0	Parent=Os11t0191400-03
Chr11	irgsp1_rep	CDS	4629648	4629722	.	+	0	Parent=Os11t0191400-03
Chr11	irgsp1_rep	CDS	4630510	4630611	.	+	0	Parent=Os11t0191400-03
Chr11	irgsp1_rep	CDS	4630775	4630978	.	+	0	Parent=Os11t0191400-03
Chr11	irgsp1_rep	three_prime_UTR	4630979	4631089	.	+	.	Parent=Os11t0191400-03
Chr11	irgsp1_rep	mRNA	4634063	4634617	.	+	.	ID=Os11t0191500-00;Name=Os11t0191500-00;Locus_id=Os11g0191500;Note=Pectinesterase inhibitor domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q53NI3 (UniProt);GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);TENOR=Os11t0191500-00;KEGG=Os11t0191500-00
Chr11	irgsp1_rep	CDS	4634063	4634617	.	+	0	Parent=Os11t0191500-00
Chr11	irgsp1_rep	mRNA	4643542	4644697	.	-	.	ID=Os11t0191800-01;Name=Os11t0191800-01;Locus_id=Os11g0191800;Note=Similar to Pectinesterase family protein.;Transcript_evidence=AK071532 (DDBJ%2C Best hit);ORF_evidence=Q53NH9 (UniProt);NIAS_FLcDNA=J023107D03;Expression=AK071532;TENOR=Os11t0191800-01;KEGG=Os11t0191800-01
Chr11	irgsp1_rep	five_prime_UTR	4644669	4644697	.	-	.	Parent=Os11t0191800-01
Chr11	irgsp1_rep	CDS	4643979	4644668	.	-	0	Parent=Os11t0191800-01
Chr11	irgsp1_rep	three_prime_UTR	4643542	4643978	.	-	.	Parent=Os11t0191800-01
Chr11	irgsp1_rep	mRNA	4655362	4657505	.	+	.	ID=Os11t0192400-01;Name=Os11t0192400-01;Locus_id=Os11g0192400;CGSNL Gene Symbol=PME31;CGSNL Gene Name=PECTIN METHYLESTERASE 31;Oryzabase Gene Symbol Synonym(s)=OsPME31;Oryzabase Gene Name Synonym(s)=pectin methylesterase 31;Note=Pectin lyase fold/virulence factor domain containing protein.;Transcript_evidence=AK100252 (DDBJ%2C Best hit);ORF_evidence=A2ZFI1 (UniProt);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=J023061A07;Oryzabase=13195;Expression=AK100252;TENOR=Os11t0192400-01;KEGG=Os11t0192400-01 (EC:3.1.1.11)
Chr11	irgsp1_rep	five_prime_UTR	4655362	4655428	.	+	.	Parent=Os11t0192400-01
Chr11	irgsp1_rep	CDS	4655429	4655867	.	+	0	Parent=Os11t0192400-01
Chr11	irgsp1_rep	CDS	4656561	4657273	.	+	2	Parent=Os11t0192400-01
Chr11	irgsp1_rep	three_prime_UTR	4657274	4657505	.	+	.	Parent=Os11t0192400-01
Chr11	irgsp1_rep	mRNA	4658961	4659953	.	+	.	ID=Os11t0192500-00;Name=Os11t0192500-00;Locus_id=Os11g0192500;Note=Similar to Pectinesterase family protein.;Transcript_evidence=AK242622 (DDBJ%2C Secondary hit);ORF_evidence=Q53NH9 (UniProt);TENOR=Os11t0192500-00;KEGG=Os11t0192500-00
Chr11	irgsp1_rep	five_prime_UTR	4658961	4658988	.	+	.	Parent=Os11t0192500-00
Chr11	irgsp1_rep	CDS	4658989	4659678	.	+	0	Parent=Os11t0192500-00
Chr11	irgsp1_rep	three_prime_UTR	4659679	4659953	.	+	.	Parent=Os11t0192500-00
Chr11	irgsp1_rep	mRNA	4670707	4673201	.	-	.	ID=Os11t0193300-00;Name=Os11t0193300-00;Locus_id=Os11g0193300;Note=Hypothetical conserved gene.;Transcript_evidence=AK109751 (DDBJ%2C Secondary hit);ORF_evidence=Q53NH3 (UniProt);Expression=AK109751;TENOR=Os11t0193300-00;KEGG=Os11t0193300-00
Chr11	irgsp1_rep	five_prime_UTR	4673097	4673201	.	-	.	Parent=Os11t0193300-00
Chr11	irgsp1_rep	CDS	4672320	4673096	.	-	0	Parent=Os11t0193300-00
Chr11	irgsp1_rep	three_prime_UTR	4672025	4672319	.	-	.	Parent=Os11t0193300-00
Chr11	irgsp1_rep	three_prime_UTR	4670707	4671350	.	-	.	Parent=Os11t0193300-00
Chr11	irgsp1_rep	mRNA	4678922	4679911	.	+	.	ID=Os11t0193800-01;Name=Os11t0193800-01;Locus_id=Os11g0193800;Note=Similar to Pectinesterase family protein.;Transcript_evidence=AK242622 (DDBJ%2C Best hit);ORF_evidence=Q53NH9 (UniProt);NIAS_FLcDNA=J090019G16;TENOR=Os11t0193800-01;KEGG=Os11t0193800-01
Chr11	irgsp1_rep	five_prime_UTR	4678922	4678949	.	+	.	Parent=Os11t0193800-01
Chr11	irgsp1_rep	CDS	4678950	4679636	.	+	0	Parent=Os11t0193800-01
Chr11	irgsp1_rep	three_prime_UTR	4679637	4679911	.	+	.	Parent=Os11t0193800-01
Chr11	irgsp1_rep	mRNA	4701769	4702383	.	-	.	ID=Os11t0194000-00;Name=Os11t0194000-00;Locus_id=Os11g0194000;Note=Similar to Pectinesterase.;Transcript_evidence=ab initio prediction;ORF_evidence=A2ZFI1 (UniProt);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);TENOR=Os11t0194000-00;KEGG=Os11t0194000-00
Chr11	irgsp1_rep	CDS	4701769	4702383	.	-	0	Parent=Os11t0194000-00
Chr11	irgsp1_rep	mRNA	4698862	4701264	.	-	.	ID=Os11t0194050-00;Name=Os11t0194050-00;Locus_id=Os11g0194050;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0014n19 (Wheat FLcDNA);ORF_evidence=Q53LI7 (UniProt);TENOR=Os11t0194050-00
Chr11	irgsp1_rep	five_prime_UTR	4700941	4701264	.	-	.	Parent=Os11t0194050-00
Chr11	irgsp1_rep	CDS	4700581	4700940	.	-	0	Parent=Os11t0194050-00
Chr11	irgsp1_rep	three_prime_UTR	4698862	4700580	.	-	.	Parent=Os11t0194050-00
Chr11	irgsp1_rep	mRNA	4691491	4694413	.	-	.	ID=Os11t0194100-01;Name=Os11t0194100-01;Locus_id=Os11g0194100;Note=Hypothetical conserved gene.;Transcript_evidence=AK287850 (DDBJ%2C Best hit);ORF_evidence=NP_001176400.1 (RefSeq);GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);NIAS_FLcDNA=J065195L19;TENOR=Os11t0194100-01;KEGG=Os11t0194100-01
Chr11	irgsp1_rep	five_prime_UTR	4693921	4694413	.	-	.	Parent=Os11t0194100-01
Chr11	irgsp1_rep	CDS	4693872	4693920	.	-	0	Parent=Os11t0194100-01
Chr11	irgsp1_rep	CDS	4691969	4692501	.	-	2	Parent=Os11t0194100-01
Chr11	irgsp1_rep	three_prime_UTR	4691491	4691968	.	-	.	Parent=Os11t0194100-01
Chr11	irgsp1_rep	mRNA	4703092	4703613	.	-	.	ID=Os11t0194200-00;Name=Os11t0194200-00;Locus_id=Os11g0194200;Note=Similar to pectinesterase family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_566038.1 (RefSeq);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);TENOR=Os11t0194200-00;KEGG=Os11t0194200-00
Chr11	irgsp1_rep	CDS	4703092	4703613	.	-	0	Parent=Os11t0194200-00
Chr11	irgsp1_rep	mRNA	4714315	4715470	.	+	.	ID=Os11t0194400-01;Name=Os11t0194400-01;Locus_id=Os11g0194400;Note=Similar to Pectinesterase family protein.;Transcript_evidence=AK071532 (DDBJ%2C Best hit);ORF_evidence=Q53NH9 (UniProt);NIAS_FLcDNA=J023107D03;Expression=AK071532;TENOR=Os11t0194400-01;KEGG=Os11t0194400-01
Chr11	irgsp1_rep	five_prime_UTR	4714315	4714343	.	+	.	Parent=Os11t0194400-01
Chr11	irgsp1_rep	CDS	4714344	4715033	.	+	0	Parent=Os11t0194400-01
Chr11	irgsp1_rep	three_prime_UTR	4715034	4715470	.	+	.	Parent=Os11t0194400-01
Chr11	irgsp1_rep	mRNA	4723880	4725123	.	-	.	ID=Os11t0194600-01;Name=Os11t0194600-01;Locus_id=Os11g0194600;Note=Pectinesterase inhibitor domain containing protein.;Transcript_evidence=AK072582 (DDBJ%2C Best hit);ORF_evidence=NP_001176400.1 (RefSeq);GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);NIAS_FLcDNA=J023131J21;Expression=AK072582;TENOR=Os11t0194600-01;KEGG=Os11t0194600-01
Chr11	irgsp1_rep	five_prime_UTR	4724963	4725123	.	-	.	Parent=Os11t0194600-01
Chr11	irgsp1_rep	CDS	4724402	4724962	.	-	0	Parent=Os11t0194600-01
Chr11	irgsp1_rep	three_prime_UTR	4723880	4724401	.	-	.	Parent=Os11t0194600-01
Chr11	irgsp1_rep	mRNA	4731977	4734085	.	+	.	ID=Os11t0194800-01;Name=Os11t0194800-01;Locus_id=Os11g0194800;Note=Similar to DNA-directed RNA polymerase II 7.6 kDa polypeptide (EC 2.7.7.6) (RPB10) (RPB7.6).;Transcript_evidence=AK108801 (DDBJ%2C Best hit);ORF_evidence=NP_001148175.1 (RefSeq);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA polymerase%2C subunit N/RPB10 (IPR000268),Homeodomain-related (IPR012287),RNA polymerases%2C subunit N%2C zinc binding site (IPR020789),RNA polymerase subunit RPB10 (IPR023580);NIAS_FLcDNA=002-151-C09;Expression=AK108801;TENOR=Os11t0194800-01;KEGG=Os11t0194800-01 (EC:2.7.7.6)
Chr11	irgsp1_rep	five_prime_UTR	4731977	4732018	.	+	.	Parent=Os11t0194800-01
Chr11	irgsp1_rep	CDS	4732019	4732054	.	+	0	Parent=Os11t0194800-01
Chr11	irgsp1_rep	CDS	4732202	4732260	.	+	0	Parent=Os11t0194800-01
Chr11	irgsp1_rep	CDS	4733592	4733686	.	+	1	Parent=Os11t0194800-01
Chr11	irgsp1_rep	CDS	4733779	4733813	.	+	2	Parent=Os11t0194800-01
Chr11	irgsp1_rep	three_prime_UTR	4733814	4734085	.	+	.	Parent=Os11t0194800-01
Chr11	irgsp1_rep	mRNA	4734980	4738431	.	-	.	ID=Os11t0194900-01;Name=Os11t0194900-01;Locus_id=Os11g0194900;CGSNL Gene Symbol=RLCK315;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 315;Oryzabase Gene Symbol Synonym(s)=OsRLCK315;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 315;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK072656 (DDBJ%2C Best hit);ORF_evidence=Q2QWW5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023133C01;Oryzabase=18988;Expression=AK072656;TENOR=Os11t0194900-01;KEGG=Os11t0194900-01
Chr11	irgsp1_rep	five_prime_UTR	4738431	4738431	.	-	.	Parent=Os11t0194900-01
Chr11	irgsp1_rep	CDS	4738314	4738430	.	-	0	Parent=Os11t0194900-01
Chr11	irgsp1_rep	CDS	4737756	4737877	.	-	0	Parent=Os11t0194900-01
Chr11	irgsp1_rep	CDS	4737525	4737664	.	-	1	Parent=Os11t0194900-01
Chr11	irgsp1_rep	CDS	4736853	4737425	.	-	2	Parent=Os11t0194900-01
Chr11	irgsp1_rep	CDS	4736522	4736770	.	-	2	Parent=Os11t0194900-01
Chr11	irgsp1_rep	CDS	4736265	4736431	.	-	2	Parent=Os11t0194900-01
Chr11	irgsp1_rep	CDS	4736092	4736171	.	-	0	Parent=Os11t0194900-01
Chr11	irgsp1_rep	CDS	4735852	4735999	.	-	1	Parent=Os11t0194900-01
Chr11	irgsp1_rep	CDS	4735608	4735757	.	-	0	Parent=Os11t0194900-01
Chr11	irgsp1_rep	CDS	4735257	4735514	.	-	0	Parent=Os11t0194900-01
Chr11	irgsp1_rep	three_prime_UTR	4734980	4735256	.	-	.	Parent=Os11t0194900-01
Chr11	irgsp1_rep	mRNA	4757439	4761547	.	-	.	ID=Os11t0195000-00;Name=Os11t0195000-00;Locus_id=Os11g0195000;Note=Similar to J033060E19%2C full insert sequence.;Transcript_evidence=AK331030 (DDBJ);ORF_evidence=B7ES48 (UniProt);TENOR=Os11t0195000-00
Chr11	irgsp1_rep	CDS	4760830	4761547	.	-	0	Parent=Os11t0195000-00
Chr11	irgsp1_rep	CDS	4757498	4757667	.	-	2	Parent=Os11t0195000-00
Chr11	irgsp1_rep	three_prime_UTR	4757439	4757497	.	-	.	Parent=Os11t0195000-00
Chr11	irgsp1_rep	mRNA	4761890	4771103	.	+	.	ID=Os11t0195100-00;Name=Os11t0195100-00;Locus_id=Os11g0195100;Note=Similar to Protein translocase subunit secA.;Transcript_evidence=AK368758 (DDBJ);ORF_evidence=A3C9G1 (UniProt);GO=Biological Process: protein targeting (GO:0006605),Biological Process: intracellular protein transport (GO:0006886),Biological Process: protein import (GO:0017038),Cellular Component: membrane (GO:0016020),Molecular Function: ATP binding (GO:0005524);InterPro=SecA protein (IPR000185),SecA DEAD-like%2C N-terminal (IPR011115),SecA Wing/Scaffold (IPR011116),SecA preprotein%2C cross-linking domain (IPR011130),SecA motor DEAD (IPR014018),SecA conserved site (IPR020937);TENOR=Os11t0195100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	4761890	4762415	.	+	0	Parent=Os11t0195100-00
Chr11	irgsp1_rep	CDS	4762531	4762595	.	+	2	Parent=Os11t0195100-00
Chr11	irgsp1_rep	CDS	4762715	4762835	.	+	0	Parent=Os11t0195100-00
Chr11	irgsp1_rep	CDS	4763288	4763379	.	+	2	Parent=Os11t0195100-00
Chr11	irgsp1_rep	CDS	4763542	4763607	.	+	0	Parent=Os11t0195100-00
Chr11	irgsp1_rep	CDS	4763867	4763931	.	+	0	Parent=Os11t0195100-00
Chr11	irgsp1_rep	CDS	4764050	4764137	.	+	1	Parent=Os11t0195100-00
Chr11	irgsp1_rep	CDS	4764262	4764327	.	+	0	Parent=Os11t0195100-00
Chr11	irgsp1_rep	CDS	4764420	4764535	.	+	0	Parent=Os11t0195100-00
Chr11	irgsp1_rep	CDS	4765102	4765192	.	+	1	Parent=Os11t0195100-00
Chr11	irgsp1_rep	CDS	4766034	4766117	.	+	0	Parent=Os11t0195100-00
Chr11	irgsp1_rep	CDS	4766243	4766335	.	+	0	Parent=Os11t0195100-00
Chr11	irgsp1_rep	CDS	4766420	4766515	.	+	0	Parent=Os11t0195100-00
Chr11	irgsp1_rep	CDS	4766606	4766691	.	+	0	Parent=Os11t0195100-00
Chr11	irgsp1_rep	CDS	4767220	4767298	.	+	1	Parent=Os11t0195100-00
Chr11	irgsp1_rep	CDS	4767367	4767480	.	+	0	Parent=Os11t0195100-00
Chr11	irgsp1_rep	CDS	4767582	4767677	.	+	0	Parent=Os11t0195100-00
Chr11	irgsp1_rep	CDS	4767752	4767815	.	+	0	Parent=Os11t0195100-00
Chr11	irgsp1_rep	CDS	4767913	4768202	.	+	2	Parent=Os11t0195100-00
Chr11	irgsp1_rep	CDS	4768593	4768648	.	+	0	Parent=Os11t0195100-00
Chr11	irgsp1_rep	CDS	4768752	4768869	.	+	1	Parent=Os11t0195100-00
Chr11	irgsp1_rep	CDS	4768979	4769059	.	+	0	Parent=Os11t0195100-00
Chr11	irgsp1_rep	CDS	4769375	4769454	.	+	0	Parent=Os11t0195100-00
Chr11	irgsp1_rep	CDS	4769693	4769747	.	+	1	Parent=Os11t0195100-00
Chr11	irgsp1_rep	CDS	4769834	4769892	.	+	0	Parent=Os11t0195100-00
Chr11	irgsp1_rep	CDS	4769960	4770160	.	+	1	Parent=Os11t0195100-00
Chr11	irgsp1_rep	CDS	4770259	4770382	.	+	1	Parent=Os11t0195100-00
Chr11	irgsp1_rep	CDS	4770747	4770821	.	+	0	Parent=Os11t0195100-00
Chr11	irgsp1_rep	CDS	4770909	4771082	.	+	0	Parent=Os11t0195100-00
Chr11	irgsp1_rep	three_prime_UTR	4771083	4771103	.	+	.	Parent=Os11t0195100-00
Chr11	irgsp1_rep	mRNA	4776674	4777775	.	+	.	ID=Os11t0195200-00;Name=Os11t0195200-00;Locus_id=Os11g0195200;Note=Hypothetical conserved gene.;Transcript_evidence=BT062221 (DDBJ);ORF_evidence=Q53LH4 (UniProt);TENOR=Os11t0195200-00;KEGG=Os11t0195200-00
Chr11	irgsp1_rep	CDS	4776674	4777264	.	+	0	Parent=Os11t0195200-00
Chr11	irgsp1_rep	three_prime_UTR	4777265	4777399	.	+	.	Parent=Os11t0195200-00
Chr11	irgsp1_rep	three_prime_UTR	4777490	4777775	.	+	.	Parent=Os11t0195200-00
Chr11	irgsp1_rep	mRNA	4785275	4789298	.	+	.	ID=Os11t0195500-01;Name=Os11t0195500-01;Locus_id=Os11g0195500;RAP-DB Gene Symbol Synonym(s)=OsPAD4;RAP-DB Gene Name Synonym(s)=phytoalexin deficient 4;CGSNL Gene Symbol=PAD4;CGSNL Gene Name=PHYTOALEXIN DEFICIENT 4;Oryzabase Gene Symbol Synonym(s)=OsPAD4;Oryzabase Gene Name Synonym(s)=phytoalexin deficient 4;Note=Rice ortholog of Arabidopsis phytoalexin deficient 4%2C Positive regulation of defense responses to bacterial pathogens;Transcript_evidence=AK243523;ORF_evidence=A0A0P0Y0L8;GO=Biological Process: lipid metabolic process (GO:0006629);InterPro=Alpha/Beta hydrolase fold (IPR029058),Fungal lipase-like domain (IPR002921),EDS1%2C EP domain (IPR041266);NIAS_FLcDNA=J100075L24;Manual Curation=May 19%2C 2020;Literature_PMID=24617729;Oryzabase=10461;TENOR=Os11t0195500-01;KEGG=Os11t0195500-01;Subcellular location=plasma membrane (GO:0005886)
Chr11	irgsp1_rep	five_prime_UTR	4785275	4785337	.	+	.	Parent=Os11t0195500-01
Chr11	irgsp1_rep	CDS	4785338	4785739	.	+	0	Parent=Os11t0195500-01
Chr11	irgsp1_rep	CDS	4787431	4788636	.	+	0	Parent=Os11t0195500-01
Chr11	irgsp1_rep	three_prime_UTR	4788637	4789298	.	+	.	Parent=Os11t0195500-01
Chr11	irgsp1_rep	mRNA	4799321	4801300	.	+	.	ID=Os11t0195600-01;Name=Os11t0195600-01;Locus_id=Os11g0195600;CGSNL Gene Symbol=AAP11C;CGSNL Gene Name=AMINO ACID PERMEASE 11C;Oryzabase Gene Symbol Synonym(s)=OsAAP11C%2C OsAAP11%2C AAP11;Oryzabase Gene Name Synonym(s)=amino acid permease 11C%2C amino acid permease 11%2C amino acid/auxin permease 11;Note=Similar to Amino acid carrier (Fragment).;Transcript_evidence=AK068003 (DDBJ%2C Best hit),AK104370 (DDBJ%2C Best hit);ORF_evidence=NP_001149036.1 (RefSeq);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=J013129H02,001-035-E06;Oryzabase=18495;TENOR=Os11t0195600-01
Chr11	irgsp1_rep	five_prime_UTR	4799321	4799421	.	+	.	Parent=Os11t0195600-01
Chr11	irgsp1_rep	CDS	4799422	4799858	.	+	0	Parent=Os11t0195600-01
Chr11	irgsp1_rep	CDS	4799955	4800309	.	+	1	Parent=Os11t0195600-01
Chr11	irgsp1_rep	CDS	4800414	4801052	.	+	0	Parent=Os11t0195600-01
Chr11	irgsp1_rep	three_prime_UTR	4801053	4801300	.	+	.	Parent=Os11t0195600-01
Chr11	irgsp1_rep	mRNA	4799381	4801048	.	-	.	ID=Os11t0195650-00;Name=Os11t0195650-00;Locus_id=Os11g0195650;Note=Hypothetical protein.;Transcript_evidence=tplb0036o08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0195650-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	4801047	4801048	.	-	.	Parent=Os11t0195650-00
Chr11	irgsp1_rep	CDS	4800414	4801046	.	-	0	Parent=Os11t0195650-00
Chr11	irgsp1_rep	CDS	4800061	4800309	.	-	0	Parent=Os11t0195650-00
Chr11	irgsp1_rep	three_prime_UTR	4799954	4800060	.	-	.	Parent=Os11t0195650-00
Chr11	irgsp1_rep	three_prime_UTR	4799381	4799857	.	-	.	Parent=Os11t0195650-00
Chr11	irgsp1_rep	mRNA	4805210	4806760	.	-	.	ID=Os11t0195700-01;Name=Os11t0195700-01;Locus_id=Os11g0195700;Note=Conserved hypothetical protein.;Transcript_evidence=AK111008 (DDBJ%2C Best hit);ORF_evidence=A2YK49 (UniProt);NIAS_FLcDNA=002-174-F07;Expression=AK111008;TENOR=Os11t0195700-01;KEGG=Os11t0195700-01
Chr11	irgsp1_rep	five_prime_UTR	4806580	4806760	.	-	.	Parent=Os11t0195700-01
Chr11	irgsp1_rep	CDS	4806265	4806579	.	-	0	Parent=Os11t0195700-01
Chr11	irgsp1_rep	three_prime_UTR	4806257	4806264	.	-	.	Parent=Os11t0195700-01
Chr11	irgsp1_rep	three_prime_UTR	4805210	4805620	.	-	.	Parent=Os11t0195700-01
Chr11	irgsp1_rep	mRNA	4806222	4806779	.	+	.	ID=Os11t0195750-01;Name=Os11t0195750-01;Locus_id=Os11g0195750;Note=Non-protein coding transcript.;Transcript_evidence=AK062993 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-109-G05;TENOR=Os11t0195750-01
Chr11	irgsp1_rep	exon	4806222	4806779	.	+	.	Parent=Os11t0195750-01
Chr11	irgsp1_rep	mRNA	4807432	4808617	.	-	.	ID=Os11t0195800-01;Name=Os11t0195800-01;Locus_id=Os11g0195800;Note=Conserved hypothetical protein.;Transcript_evidence=AK061281 (DDBJ%2C Best hit);ORF_evidence=A2YK50 (UniProt);NIAS_FLcDNA=006-212-F07;Expression=AK061281;TENOR=Os11t0195800-01;KEGG=Os11t0195800-01
Chr11	irgsp1_rep	five_prime_UTR	4808535	4808617	.	-	.	Parent=Os11t0195800-01
Chr11	irgsp1_rep	CDS	4807656	4808534	.	-	0	Parent=Os11t0195800-01
Chr11	irgsp1_rep	three_prime_UTR	4807432	4807655	.	-	.	Parent=Os11t0195800-01
Chr11	irgsp1_rep	mRNA	4825789	4826259	.	+	.	ID=Os11t0196400-01;Name=Os11t0196400-01;Locus_id=Os11g0196400;Note=Non-protein coding transcript.;Transcript_evidence=AK107847 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-134-A05;TENOR=Os11t0196400-01
Chr11	irgsp1_rep	exon	4825789	4826259	.	+	.	Parent=Os11t0196400-01
Chr11	irgsp1_rep	mRNA	4859203	4863986	.	-	.	ID=Os11t0197200-01;Name=Os11t0197200-01;Locus_id=Os11g0197200;Note=Hypothetical protein.;Transcript_evidence=AK102793 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033108A18;Expression=AK102793;TENOR=Os11t0197200-01;KEGG=Os11t0197200-01
Chr11	irgsp1_rep	five_prime_UTR	4863876	4863986	.	-	.	Parent=Os11t0197200-01
Chr11	irgsp1_rep	five_prime_UTR	4861061	4862884	.	-	.	Parent=Os11t0197200-01
Chr11	irgsp1_rep	CDS	4860812	4861060	.	-	0	Parent=Os11t0197200-01
Chr11	irgsp1_rep	three_prime_UTR	4860368	4860811	.	-	.	Parent=Os11t0197200-01
Chr11	irgsp1_rep	three_prime_UTR	4859203	4859439	.	-	.	Parent=Os11t0197200-01
Chr11	irgsp1_rep	mRNA	4866531	4871520	.	-	.	ID=Os11t0197400-01;Name=Os11t0197400-01;Locus_id=Os11g0197400;Note=Protein of unknown function DUF803 domain containing protein.;Transcript_evidence=AK120356 (DDBJ%2C Best hit);ORF_evidence=Q53LR5 (UniProt);InterPro=Protein of unknown function DUF803 (IPR008521);NIAS_FLcDNA=J013067B07;TENOR=Os11t0197400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	4871386	4871520	.	-	.	Parent=Os11t0197400-01
Chr11	irgsp1_rep	CDS	4871119	4871385	.	-	0	Parent=Os11t0197400-01
Chr11	irgsp1_rep	three_prime_UTR	4868928	4871118	.	-	.	Parent=Os11t0197400-01
Chr11	irgsp1_rep	three_prime_UTR	4868672	4868832	.	-	.	Parent=Os11t0197400-01
Chr11	irgsp1_rep	three_prime_UTR	4866531	4868561	.	-	.	Parent=Os11t0197400-01
Chr11	irgsp1_rep	mRNA	4871214	4871560	.	+	.	ID=Os11t0197433-00;Name=Os11t0197433-00;Locus_id=Os11g0197433;Note=Hypothetical gene.;Transcript_evidence=EU941502 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0197433-00;KEGG=Os11t0197433-00
Chr11	irgsp1_rep	five_prime_UTR	4871214	4871214	.	+	.	Parent=Os11t0197433-00
Chr11	irgsp1_rep	CDS	4871215	4871511	.	+	0	Parent=Os11t0197433-00
Chr11	irgsp1_rep	three_prime_UTR	4871512	4871560	.	+	.	Parent=Os11t0197433-00
Chr11	irgsp1_rep	mRNA	4892242	4892880	.	-	.	ID=Os11t0197466-00;Name=Os11t0197466-00;Locus_id=Os11g0197466;Note=Hypothetical gene.;Transcript_evidence=EU945961 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0197466-00;KEGG=Os11t0197466-00
Chr11	irgsp1_rep	five_prime_UTR	4892859	4892880	.	-	.	Parent=Os11t0197466-00
Chr11	irgsp1_rep	CDS	4892493	4892858	.	-	0	Parent=Os11t0197466-00
Chr11	irgsp1_rep	three_prime_UTR	4892242	4892492	.	-	.	Parent=Os11t0197466-00
Chr11	irgsp1_rep	mRNA	4892372	4893134	.	+	.	ID=Os11t0197500-01;Name=Os11t0197500-01;Locus_id=Os11g0197500;Note=Conserved hypothetical protein.;Transcript_evidence=AK120960 (DDBJ%2C Best hit);ORF_evidence=A3C9G3 (UniProt);NIAS_FLcDNA=J023039K16;Expression=AK120960;TENOR=Os11t0197500-01;KEGG=Os11t0197500-01
Chr11	irgsp1_rep	five_prime_UTR	4892372	4892445	.	+	.	Parent=Os11t0197500-01
Chr11	irgsp1_rep	CDS	4892446	4892862	.	+	0	Parent=Os11t0197500-01
Chr11	irgsp1_rep	three_prime_UTR	4892863	4893134	.	+	.	Parent=Os11t0197500-01
Chr11	irgsp1_rep	mRNA	4894638	4899862	.	-	.	ID=Os11t0197600-01;Name=Os11t0197600-01;Locus_id=Os11g0197600;Note=Transcriptional factor B3 family protein.;Transcript_evidence=AK067571 (DDBJ%2C Best hit),AK101941 (DDBJ%2C Best hit);ORF_evidence=Q2R9D2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=J013108N22,J033074I03;Expression=AK067571;TENOR=Os11t0197600-01;KEGG=Os11t0197600-01
Chr11	irgsp1_rep	five_prime_UTR	4899575	4899862	.	-	.	Parent=Os11t0197600-01
Chr11	irgsp1_rep	CDS	4899440	4899574	.	-	0	Parent=Os11t0197600-01
Chr11	irgsp1_rep	CDS	4896457	4896994	.	-	0	Parent=Os11t0197600-01
Chr11	irgsp1_rep	CDS	4896002	4896103	.	-	2	Parent=Os11t0197600-01
Chr11	irgsp1_rep	CDS	4895764	4895927	.	-	2	Parent=Os11t0197600-01
Chr11	irgsp1_rep	CDS	4895012	4895293	.	-	0	Parent=Os11t0197600-01
Chr11	irgsp1_rep	three_prime_UTR	4894638	4895011	.	-	.	Parent=Os11t0197600-01
Chr11	irgsp1_rep	mRNA	4907179	4910693	.	+	.	ID=Os11t0197725-01;Name=Os11t0197725-01;Locus_id=Os11g0197725;Note=Hypothetical protein.;Transcript_evidence=AK288832 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J090073P17;TENOR=Os11t0197725-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	4907179	4908322	.	+	.	Parent=Os11t0197725-01
Chr11	irgsp1_rep	CDS	4908323	4908658	.	+	0	Parent=Os11t0197725-01
Chr11	irgsp1_rep	three_prime_UTR	4908659	4910693	.	+	.	Parent=Os11t0197725-01
Chr11	irgsp1_rep	mRNA	4918782	4919895	.	-	.	ID=Os11t0197975-00;Name=Os11t0197975-00;Locus_id=Os11g0197975;Note=Hypothetical gene.;Transcript_evidence=BT086364 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0197975-00;KEGG=Os11t0197975-00
Chr11	irgsp1_rep	five_prime_UTR	4919837	4919895	.	-	.	Parent=Os11t0197975-00
Chr11	irgsp1_rep	CDS	4919402	4919836	.	-	0	Parent=Os11t0197975-00
Chr11	irgsp1_rep	three_prime_UTR	4918782	4919401	.	-	.	Parent=Os11t0197975-00
Chr11	irgsp1_rep	mRNA	4918870	4923725	.	+	.	ID=Os11t0198100-01;Name=Os11t0198100-01;Locus_id=Os11g0198100;Note=Similar to EMB2756.;Transcript_evidence=AK070130 (DDBJ%2C Best hit);ORF_evidence=B6SVM5 (UniProt);InterPro=Protein of unknown function DUF616 (IPR006852);NIAS_FLcDNA=J023046C06;TENOR=Os11t0198100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	4918870	4918940	.	+	.	Parent=Os11t0198100-01
Chr11	irgsp1_rep	CDS	4918941	4919169	.	+	0	Parent=Os11t0198100-01
Chr11	irgsp1_rep	CDS	4919367	4920080	.	+	2	Parent=Os11t0198100-01
Chr11	irgsp1_rep	CDS	4920597	4920982	.	+	2	Parent=Os11t0198100-01
Chr11	irgsp1_rep	three_prime_UTR	4920983	4921613	.	+	.	Parent=Os11t0198100-01
Chr11	irgsp1_rep	three_prime_UTR	4922416	4922672	.	+	.	Parent=Os11t0198100-01
Chr11	irgsp1_rep	three_prime_UTR	4922767	4922945	.	+	.	Parent=Os11t0198100-01
Chr11	irgsp1_rep	three_prime_UTR	4923024	4923725	.	+	.	Parent=Os11t0198100-01
Chr11	irgsp1_rep	mRNA	4923859	4925639	.	-	.	ID=Os11t0198200-01;Name=Os11t0198200-01;Locus_id=Os11g0198200;Note=Conserved hypothetical protein.;Transcript_evidence=AK103223 (DDBJ%2C Best hit);ORF_evidence=Q53LR4 (UniProt);NIAS_FLcDNA=J033123A03;Expression=AK103223;TENOR=Os11t0198200-01;KEGG=Os11t0198200-01
Chr11	irgsp1_rep	five_prime_UTR	4925507	4925639	.	-	.	Parent=Os11t0198200-01
Chr11	irgsp1_rep	CDS	4925502	4925506	.	-	0	Parent=Os11t0198200-01
Chr11	irgsp1_rep	CDS	4924793	4925226	.	-	1	Parent=Os11t0198200-01
Chr11	irgsp1_rep	CDS	4924125	4924756	.	-	2	Parent=Os11t0198200-01
Chr11	irgsp1_rep	three_prime_UTR	4923859	4924124	.	-	.	Parent=Os11t0198200-01
Chr11	irgsp1_rep	mRNA	4924222	4925362	.	+	.	ID=Os11t0198250-00;Name=Os11t0198250-00;Locus_id=Os11g0198250;Note=Hypothetical gene.;Transcript_evidence=CT830838 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os11t0198250-00;KEGG=Os11t0198250-00
Chr11	irgsp1_rep	five_prime_UTR	4924222	4924341	.	+	.	Parent=Os11t0198250-00
Chr11	irgsp1_rep	CDS	4924342	4924839	.	+	0	Parent=Os11t0198250-00
Chr11	irgsp1_rep	three_prime_UTR	4924840	4925362	.	+	.	Parent=Os11t0198250-00
Chr11	irgsp1_rep	mRNA	4945892	4948108	.	+	.	ID=Os11t0198900-01;Name=Os11t0198900-01;Locus_id=Os11g0198900;Note=Hypothetical conserved gene.;Transcript_evidence=AK241510 (DDBJ%2C Best hit);ORF_evidence=Q53LQ5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J065168H08;TENOR=Os11t0198900-01;KEGG=Os11t0198900-01
Chr11	irgsp1_rep	five_prime_UTR	4945892	4945898	.	+	.	Parent=Os11t0198900-01
Chr11	irgsp1_rep	CDS	4945899	4946522	.	+	0	Parent=Os11t0198900-01
Chr11	irgsp1_rep	CDS	4947084	4947869	.	+	0	Parent=Os11t0198900-01
Chr11	irgsp1_rep	three_prime_UTR	4947870	4948108	.	+	.	Parent=Os11t0198900-01
Chr11	irgsp1_rep	mRNA	4946880	4947633	.	-	.	ID=Os11t0198951-01;Name=Os11t0198951-01;Locus_id=Os11g0198951;Note=Hypothetical conserved gene.;Transcript_evidence=AK107759 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-133-A07;Expression=AK107759;TENOR=Os11t0198951-01;KEGG=Os11t0198951-01
Chr11	irgsp1_rep	five_prime_UTR	4947633	4947633	.	-	.	Parent=Os11t0198951-01
Chr11	irgsp1_rep	CDS	4947180	4947632	.	-	0	Parent=Os11t0198951-01
Chr11	irgsp1_rep	three_prime_UTR	4946880	4947179	.	-	.	Parent=Os11t0198951-01
Chr11	irgsp1_rep	mRNA	4965240	4967120	.	-	.	ID=Os11t0199000-01;Name=Os11t0199000-01;Locus_id=Os11g0199000;Note=Similar to cDNA%2C clone: J065168H08%2C full insert sequence.;Transcript_evidence=AK064197 (DDBJ%2C Best hit);ORF_evidence=B7F8U7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=002-104-D06;TENOR=Os11t0199000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	4965987	4967120	.	-	.	Parent=Os11t0199000-01
Chr11	irgsp1_rep	CDS	4965495	4965986	.	-	0	Parent=Os11t0199000-01
Chr11	irgsp1_rep	three_prime_UTR	4965240	4965494	.	-	.	Parent=Os11t0199000-01
Chr11	irgsp1_rep	mRNA	4971319	4975043	.	-	.	ID=Os11t0199200-01;Name=Os11t0199200-01;Locus_id=Os11g0199200;RAP-DB Gene Symbol Synonym(s)=ESP2%2C PDIL1%3B1%2C PDIL1-1%2C PDIL 1-1%2C PDI%2C OsPDIL1-1%2C esp2(rsp2)%2C rsp2%2C esp2;RAP-DB Gene Name Synonym(s)=ENDOSPERM STORAGE PROTEIN 2%2C PROTEIN DISULFIDE ISOMERASE-LIKE 1%3B1%2C PROTEIN DISULFIDE ISOMERASE-LIKE 1-1%2C protein disulfide-isomerase%2C PDI-like protein 1-1%2C Protein Disulfide Isomerase Like 1-1%2C endosperm storage protein2%2C endosperm storage protein 2%2C endosperm storage protein-2%2C endosperm storage protein mutant2;Oryzabase Gene Symbol Synonym(s)=OsPDIL1%3B1%2C PDIL1%3B1%2C PDIL1-1%2C PDIL 1-1%2C PDI%2C OsPDIL1-1;Oryzabase Gene Name Synonym(s)=PROTEIN DISULFIDE ISOMERASE-LIKE 1%3B1%2C PROTEIN DISULFIDE ISOMERASE-LIKE 1-1%2C protein disulfide-isomerase%2C PDI-like protein 1-1%2C Protein Disulfide Isomerase Like 1-1;Note=Protein disulfide isomerase-like enzyme%2C Starch synthesis%2C Maturation of proglutelin in endosperm;Transcript_evidence=AK068268,AB373950 (Kinmaze);ORF_evidence=Q53LQ0;GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: isomerase activity (GO:0016853),Cellular Component: endoplasmic reticulum (GO:0005783);InterPro=Protein disulphide isomerase (IPR005792),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766),Disulphide isomerase (IPR005788),Thioredoxin%2C conserved site (IPR017937);NIAS_FLcDNA=J013147I21;Manual Curation=July 4%2C 2016;Literature_PMID=20627947;Oryzabase=9281;Expression=AK068268;TENOR=Os11t0199200-01;KEGG=Os11t0199200-01
Chr11	irgsp1_rep	five_prime_UTR	4975000	4975043	.	-	.	Parent=Os11t0199200-01
Chr11	irgsp1_rep	CDS	4974797	4974999	.	-	0	Parent=Os11t0199200-01
Chr11	irgsp1_rep	CDS	4974127	4974157	.	-	1	Parent=Os11t0199200-01
Chr11	irgsp1_rep	CDS	4973734	4974021	.	-	0	Parent=Os11t0199200-01
Chr11	irgsp1_rep	CDS	4973442	4973630	.	-	0	Parent=Os11t0199200-01
Chr11	irgsp1_rep	CDS	4973175	4973300	.	-	0	Parent=Os11t0199200-01
Chr11	irgsp1_rep	CDS	4972747	4972884	.	-	0	Parent=Os11t0199200-01
Chr11	irgsp1_rep	CDS	4972545	4972664	.	-	0	Parent=Os11t0199200-01
Chr11	irgsp1_rep	CDS	4972317	4972434	.	-	0	Parent=Os11t0199200-01
Chr11	irgsp1_rep	CDS	4972014	4972126	.	-	2	Parent=Os11t0199200-01
Chr11	irgsp1_rep	CDS	4971689	4971901	.	-	0	Parent=Os11t0199200-01
Chr11	irgsp1_rep	three_prime_UTR	4971684	4971688	.	-	.	Parent=Os11t0199200-01
Chr11	irgsp1_rep	three_prime_UTR	4971319	4971604	.	-	.	Parent=Os11t0199200-01
Chr11	irgsp1_rep	mRNA	4971319	4973964	.	-	.	ID=Os11t0199200-02;Name=Os11t0199200-02;Locus_id=Os11g0199200;Oryzabase Gene Symbol Synonym(s)=OsPDIL1%3B1%2C PDIL1%3B1%2C PDIL1-1%2C PDIL 1-1%2C PDI%2C OsPDIL1-1;Oryzabase Gene Name Synonym(s)=PROTEIN DISULFIDE ISOMERASE-LIKE 1%3B1%2C PROTEIN DISULFIDE ISOMERASE-LIKE 1-1%2C protein disulfide-isomerase%2C PDI-like protein 1-1%2C Protein Disulfide Isomerase Like 1-1;Note=Similar to Protein disulfide isomerase.;Transcript_evidence=AK059538 (DDBJ%2C Best hit);ORF_evidence=A2ZCE6 (UniProt);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Cellular Component: endoplasmic reticulum (GO:0005783),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035),Molecular Function: isomerase activity (GO:0016853);InterPro=Thioredoxin (IPR005746),Disulphide isomerase (IPR005788),Protein disulphide isomerase (IPR005792),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766),Thioredoxin%2C conserved site (IPR017937);NIAS_FLcDNA=001-029-E04;Oryzabase=9281;Expression=AK059538;TENOR=Os11t0199200-02;KEGG=Os11t0199200-02 (EC:5.3.4.1)
Chr11	irgsp1_rep	CDS	4973734	4973964	.	-	0	Parent=Os11t0199200-02
Chr11	irgsp1_rep	CDS	4973442	4973630	.	-	0	Parent=Os11t0199200-02
Chr11	irgsp1_rep	CDS	4973175	4973300	.	-	0	Parent=Os11t0199200-02
Chr11	irgsp1_rep	CDS	4972747	4972884	.	-	0	Parent=Os11t0199200-02
Chr11	irgsp1_rep	CDS	4972545	4972664	.	-	0	Parent=Os11t0199200-02
Chr11	irgsp1_rep	CDS	4972317	4972434	.	-	0	Parent=Os11t0199200-02
Chr11	irgsp1_rep	CDS	4972014	4972126	.	-	2	Parent=Os11t0199200-02
Chr11	irgsp1_rep	CDS	4971689	4971901	.	-	0	Parent=Os11t0199200-02
Chr11	irgsp1_rep	three_prime_UTR	4971684	4971688	.	-	.	Parent=Os11t0199200-02
Chr11	irgsp1_rep	three_prime_UTR	4971319	4971604	.	-	.	Parent=Os11t0199200-02
Chr11	irgsp1_rep	mRNA	4991002	4992888	.	-	.	ID=Os11t0199600-02;Name=Os11t0199600-02;Locus_id=Os11g0199600;Note=Zinc finger%2C CCHC-type domain containing protein.;Transcript_evidence=AK101774 (DDBJ%2C Best hit),AK120040 (DDBJ%2C Best hit);ORF_evidence=B6TKA1 (UniProt);NIAS_FLcDNA=J033064L23,002-188-E09;Expression=AK101774;TENOR=Os11t0199600-02;KEGG=Os11t0199600-02
Chr11	irgsp1_rep	five_prime_UTR	4992787	4992888	.	-	.	Parent=Os11t0199600-02
Chr11	irgsp1_rep	five_prime_UTR	4992193	4992245	.	-	.	Parent=Os11t0199600-02
Chr11	irgsp1_rep	CDS	4991371	4992192	.	-	0	Parent=Os11t0199600-02
Chr11	irgsp1_rep	three_prime_UTR	4991002	4991370	.	-	.	Parent=Os11t0199600-02
Chr11	irgsp1_rep	mRNA	5005748	5010423	.	-	.	ID=Os11t0199700-01;Name=Os11t0199700-01;Locus_id=Os11g0199700;Oryzabase Gene Name Synonym(s)=seed protein B32E;Note=Similar to VHS and GAT domain protein.;Transcript_evidence=AK289013 (DDBJ%2C Best hit);ORF_evidence=Q53LP6 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886);InterPro=VHS (IPR002014),ENTH/VHS (IPR008942);NIAS_FLcDNA=J090089J03;Oryzabase=13866;TENOR=Os11t0199700-01
Chr11	irgsp1_rep	five_prime_UTR	5005845	5010423	.	-	.	Parent=Os11t0199700-01
Chr11	irgsp1_rep	CDS	5005748	5005844	.	-	0	Parent=Os11t0199700-01
Chr11	irgsp1_rep	mRNA	4993638	5006268	.	-	.	ID=Os11t0199700-02;Name=Os11t0199700-02;Locus_id=Os11g0199700;Oryzabase Gene Name Synonym(s)=seed protein B32E;Note=Similar to Seed protein B32E (Fragment).;Transcript_evidence=AK073816 (DDBJ%2C Best hit);ORF_evidence=D2KZ09 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Cellular Component: intracellular (GO:0005622);InterPro=VHS (IPR002014),GAT (IPR004152),ENTH/VHS (IPR008942),VHS subgroup (IPR018205);NIAS_FLcDNA=J033067D16;Oryzabase=13866;Expression=AK073816;TENOR=Os11t0199700-02;KEGG=Os11t0199700-02
Chr11	irgsp1_rep	five_prime_UTR	5006012	5006268	.	-	.	Parent=Os11t0199700-02
Chr11	irgsp1_rep	five_prime_UTR	5005845	5005876	.	-	.	Parent=Os11t0199700-02
Chr11	irgsp1_rep	CDS	5005738	5005844	.	-	0	Parent=Os11t0199700-02
Chr11	irgsp1_rep	CDS	5004103	5004181	.	-	1	Parent=Os11t0199700-02
Chr11	irgsp1_rep	CDS	5003722	5003820	.	-	0	Parent=Os11t0199700-02
Chr11	irgsp1_rep	CDS	4997771	4997884	.	-	0	Parent=Os11t0199700-02
Chr11	irgsp1_rep	CDS	4997383	4997555	.	-	0	Parent=Os11t0199700-02
Chr11	irgsp1_rep	CDS	4996115	4996196	.	-	1	Parent=Os11t0199700-02
Chr11	irgsp1_rep	CDS	4995361	4995446	.	-	0	Parent=Os11t0199700-02
Chr11	irgsp1_rep	CDS	4995038	4995275	.	-	1	Parent=Os11t0199700-02
Chr11	irgsp1_rep	CDS	4994046	4994834	.	-	0	Parent=Os11t0199700-02
Chr11	irgsp1_rep	three_prime_UTR	4993638	4994045	.	-	.	Parent=Os11t0199700-02
Chr11	irgsp1_rep	mRNA	5010771	5013677	.	-	.	ID=Os11t0199801-00;Name=Os11t0199801-00;Locus_id=Os11g0199801;Note=Conserved hypothetical protein.;Transcript_evidence=AK364614 (DDBJ);ORF_evidence=Q53LP7 (UniProt);TENOR=Os11t0199801-00
Chr11	irgsp1_rep	five_prime_UTR	5013618	5013677	.	-	.	Parent=Os11t0199801-00
Chr11	irgsp1_rep	CDS	5012689	5013617	.	-	0	Parent=Os11t0199801-00
Chr11	irgsp1_rep	CDS	5010853	5010919	.	-	1	Parent=Os11t0199801-00
Chr11	irgsp1_rep	three_prime_UTR	5010771	5010852	.	-	.	Parent=Os11t0199801-00
Chr11	irgsp1_rep	mRNA	5026325	5027273	.	+	.	ID=Os11t0199900-00;Name=Os11t0199900-00;Locus_id=Os11g0199900;Oryzabase Gene Symbol Synonym(s)=OsFbox572%2C Os_F0135;Oryzabase Gene Name Synonym(s)=F-box protein 572;Note=Similar to F-box domain containing protein.;Transcript_evidence=tplb0046i02 (Wheat FLcDNA);ORF_evidence=Q2R9B2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17339;TENOR=Os11t0199900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	5026325	5026366	.	+	.	Parent=Os11t0199900-00
Chr11	irgsp1_rep	CDS	5026367	5026591	.	+	0	Parent=Os11t0199900-00
Chr11	irgsp1_rep	three_prime_UTR	5026592	5027273	.	+	.	Parent=Os11t0199900-00
Chr11	irgsp1_rep	mRNA	5027829	5029584	.	-	.	ID=Os11t0200000-01;Name=Os11t0200000-01;Locus_id=Os11g0200000;Note=Histone deacetylase family protein.;Transcript_evidence=AK064282 (DDBJ%2C Best hit);ORF_evidence=A3C9I1 (UniProt);GO=Biological Process: histone deacetylation (GO:0016575),Molecular Function: histone deacetylase activity (GO:0004407);InterPro=Histone deacetylase superfamily (IPR000286),Histone deacetylase (IPR003084),Histone deacetylase domain (IPR023801);NIAS_FLcDNA=002-105-G06;Expression=AK064282;TENOR=Os11t0200000-01;KEGG=Os11t0200000-01 (EC:3.5.1.98)
Chr11	irgsp1_rep	five_prime_UTR	5029390	5029584	.	-	.	Parent=Os11t0200000-01
Chr11	irgsp1_rep	CDS	5028019	5029389	.	-	0	Parent=Os11t0200000-01
Chr11	irgsp1_rep	three_prime_UTR	5027829	5028018	.	-	.	Parent=Os11t0200000-01
Chr11	irgsp1_rep	mRNA	5059892	5063060	.	+	.	ID=Os11t0200600-01;Name=Os11t0200600-01;Locus_id=Os11g0200600;Oryzabase Gene Symbol Synonym(s)=Os_F0079;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK101818 (DDBJ%2C Best hit);ORF_evidence=B9G9W1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033067D24;Oryzabase=17554;TENOR=Os11t0200600-01;KEGG=Os11t0200600-01
Chr11	irgsp1_rep	five_prime_UTR	5059892	5060020	.	+	.	Parent=Os11t0200600-01
Chr11	irgsp1_rep	five_prime_UTR	5060101	5060128	.	+	.	Parent=Os11t0200600-01
Chr11	irgsp1_rep	CDS	5060129	5061163	.	+	0	Parent=Os11t0200600-01
Chr11	irgsp1_rep	CDS	5061630	5061785	.	+	0	Parent=Os11t0200600-01
Chr11	irgsp1_rep	CDS	5061871	5062050	.	+	0	Parent=Os11t0200600-01
Chr11	irgsp1_rep	CDS	5062729	5062740	.	+	0	Parent=Os11t0200600-01
Chr11	irgsp1_rep	three_prime_UTR	5062741	5063060	.	+	.	Parent=Os11t0200600-01
Chr11	irgsp1_rep	mRNA	5059894	5061398	.	+	.	ID=Os11t0200600-02;Name=Os11t0200600-02;Locus_id=Os11g0200600;Oryzabase Gene Symbol Synonym(s)=Os_F0079;Note=Similar to F-box domain containing protein%2C expressed.;Transcript_evidence=AK111444 (DDBJ%2C Best hit);ORF_evidence=B9G9W1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-183-A11;Oryzabase=17554;TENOR=Os11t0200600-02;KEGG=Os11t0200600-02
Chr11	irgsp1_rep	five_prime_UTR	5059894	5060020	.	+	.	Parent=Os11t0200600-02
Chr11	irgsp1_rep	five_prime_UTR	5060101	5060128	.	+	.	Parent=Os11t0200600-02
Chr11	irgsp1_rep	CDS	5060129	5061241	.	+	0	Parent=Os11t0200600-02
Chr11	irgsp1_rep	three_prime_UTR	5061242	5061398	.	+	.	Parent=Os11t0200600-02
Chr11	irgsp1_rep	mRNA	5073207	5083022	.	-	.	ID=Os11t0200950-01;Name=Os11t0200950-01;Locus_id=Os11g0200950;Oryzabase Gene Symbol Synonym(s)=Os_F0390;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK071265 (DDBJ%2C Best hit);ORF_evidence=A3C9I7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023086F17;Oryzabase=17555;TENOR=Os11t0200950-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	5082808	5083022	.	-	.	Parent=Os11t0200950-01
Chr11	irgsp1_rep	five_prime_UTR	5082665	5082692	.	-	.	Parent=Os11t0200950-01
Chr11	irgsp1_rep	CDS	5081792	5082664	.	-	0	Parent=Os11t0200950-01
Chr11	irgsp1_rep	CDS	5081413	5081568	.	-	0	Parent=Os11t0200950-01
Chr11	irgsp1_rep	CDS	5081124	5081319	.	-	0	Parent=Os11t0200950-01
Chr11	irgsp1_rep	CDS	5080789	5081052	.	-	2	Parent=Os11t0200950-01
Chr11	irgsp1_rep	CDS	5075748	5075788	.	-	2	Parent=Os11t0200950-01
Chr11	irgsp1_rep	three_prime_UTR	5075424	5075747	.	-	.	Parent=Os11t0200950-01
Chr11	irgsp1_rep	three_prime_UTR	5073803	5075170	.	-	.	Parent=Os11t0200950-01
Chr11	irgsp1_rep	three_prime_UTR	5073207	5073709	.	-	.	Parent=Os11t0200950-01
Chr11	irgsp1_rep	mRNA	5076111	5083020	.	-	.	ID=Os11t0200950-02;Name=Os11t0200950-02;Locus_id=Os11g0200950;Oryzabase Gene Symbol Synonym(s)=Os_F0390;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK069621 (DDBJ%2C Best hit);ORF_evidence=Q2R9A0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023025H07;Oryzabase=17555;TENOR=Os11t0200950-02;KEGG=Os11t0200950-02
Chr11	irgsp1_rep	five_prime_UTR	5082808	5083020	.	-	.	Parent=Os11t0200950-02
Chr11	irgsp1_rep	five_prime_UTR	5082665	5082692	.	-	.	Parent=Os11t0200950-02
Chr11	irgsp1_rep	CDS	5081792	5082664	.	-	0	Parent=Os11t0200950-02
Chr11	irgsp1_rep	CDS	5081413	5081568	.	-	0	Parent=Os11t0200950-02
Chr11	irgsp1_rep	CDS	5081124	5081319	.	-	0	Parent=Os11t0200950-02
Chr11	irgsp1_rep	CDS	5080789	5081052	.	-	2	Parent=Os11t0200950-02
Chr11	irgsp1_rep	CDS	5076606	5076643	.	-	2	Parent=Os11t0200950-02
Chr11	irgsp1_rep	three_prime_UTR	5076111	5076605	.	-	.	Parent=Os11t0200950-02
Chr11	irgsp1_rep	mRNA	5074034	5083018	.	-	.	ID=Os11t0200950-03;Name=Os11t0200950-03;Locus_id=Os11g0200950;Oryzabase Gene Symbol Synonym(s)=Os_F0390;Note=Similar to F-box domain containing protein%2C expressed.;Transcript_evidence=AK103566 (DDBJ%2C Best hit);ORF_evidence=Q2R9A0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Transposase%2C MuDR%2C N-terminal (IPR015401),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033132M03;Oryzabase=17555;TENOR=Os11t0200950-03;KEGG=Os11t0200950-03
Chr11	irgsp1_rep	five_prime_UTR	5082808	5083018	.	-	.	Parent=Os11t0200950-03
Chr11	irgsp1_rep	five_prime_UTR	5082665	5082692	.	-	.	Parent=Os11t0200950-03
Chr11	irgsp1_rep	CDS	5081792	5082664	.	-	0	Parent=Os11t0200950-03
Chr11	irgsp1_rep	CDS	5081413	5081568	.	-	0	Parent=Os11t0200950-03
Chr11	irgsp1_rep	CDS	5081124	5081319	.	-	0	Parent=Os11t0200950-03
Chr11	irgsp1_rep	CDS	5080789	5081052	.	-	2	Parent=Os11t0200950-03
Chr11	irgsp1_rep	CDS	5074821	5075170	.	-	2	Parent=Os11t0200950-03
Chr11	irgsp1_rep	three_prime_UTR	5074034	5074820	.	-	.	Parent=Os11t0200950-03
Chr11	irgsp1_rep	mRNA	5063121	5064147	.	-	.	ID=Os11t0201000-00;Name=Os11t0201000-00;Locus_id=Os11g0201000;Note=Hypothetical protein.;Transcript_evidence=tplb0043n03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0201000-00
Chr11	irgsp1_rep	CDS	5063566	5064147	.	-	0	Parent=Os11t0201000-00
Chr11	irgsp1_rep	three_prime_UTR	5063121	5063565	.	-	.	Parent=Os11t0201000-00
Chr11	irgsp1_rep	mRNA	5081147	5082653	.	+	.	ID=Os11t0201124-00;Name=Os11t0201124-00;Locus_id=Os11g0201124;Note=Hypothetical protein.;Transcript_evidence=tplb0026g09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0201124-00
Chr11	irgsp1_rep	five_prime_UTR	5081147	5081321	.	+	.	Parent=Os11t0201124-00
Chr11	irgsp1_rep	five_prime_UTR	5081396	5081593	.	+	.	Parent=Os11t0201124-00
Chr11	irgsp1_rep	five_prime_UTR	5081774	5082295	.	+	.	Parent=Os11t0201124-00
Chr11	irgsp1_rep	CDS	5082296	5082653	.	+	0	Parent=Os11t0201124-00
Chr11	irgsp1_rep	mRNA	5071904	5072979	.	+	.	ID=Os11t0201175-00;Name=Os11t0201175-00;Locus_id=Os11g0201175;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);TENOR=Os11t0201175-00
Chr11	irgsp1_rep	five_prime_UTR	5071904	5072200	.	+	.	Parent=Os11t0201175-00
Chr11	irgsp1_rep	five_prime_UTR	5072443	5072517	.	+	.	Parent=Os11t0201175-00
Chr11	irgsp1_rep	CDS	5072518	5072979	.	+	0	Parent=Os11t0201175-00
Chr11	irgsp1_rep	mRNA	5084166	5088705	.	-	.	ID=Os11t0201299-01;Name=Os11t0201299-01;Locus_id=Os11g0201299;Oryzabase Gene Symbol Synonym(s)=Os_F0390;Note=Similar to F-box domain containing protein.;Transcript_evidence=AK106650 (DDBJ%2C Best hit);ORF_evidence=Q2R998 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-113-F09;Oryzabase=17555;TENOR=Os11t0201299-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	5088496	5088705	.	-	.	Parent=Os11t0201299-01
Chr11	irgsp1_rep	CDS	5087782	5088495	.	-	0	Parent=Os11t0201299-01
Chr11	irgsp1_rep	three_prime_UTR	5087644	5087781	.	-	.	Parent=Os11t0201299-01
Chr11	irgsp1_rep	three_prime_UTR	5087031	5087186	.	-	.	Parent=Os11t0201299-01
Chr11	irgsp1_rep	three_prime_UTR	5086747	5086942	.	-	.	Parent=Os11t0201299-01
Chr11	irgsp1_rep	three_prime_UTR	5084166	5084471	.	-	.	Parent=Os11t0201299-01
Chr11	irgsp1_rep	mRNA	5087037	5088567	.	+	.	ID=Os11t0201329-00;Name=Os11t0201329-00;Locus_id=Os11g0201329;Note=Hypothetical protein.;Transcript_evidence=tplb0026g09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0201329-00
Chr11	irgsp1_rep	five_prime_UTR	5087037	5087193	.	+	.	Parent=Os11t0201329-00
Chr11	irgsp1_rep	five_prime_UTR	5087629	5088115	.	+	.	Parent=Os11t0201329-00
Chr11	irgsp1_rep	CDS	5088116	5088567	.	+	0	Parent=Os11t0201329-00
Chr11	irgsp1_rep	mRNA	5089294	5093366	.	-	.	ID=Os11t0201360-01;Name=Os11t0201360-01;Locus_id=Os11g0201360;Oryzabase Gene Symbol Synonym(s)=Os_F0253;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK101043 (DDBJ%2C Best hit);ORF_evidence=Q2R998 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033004D14;Oryzabase=17556;TENOR=Os11t0201360-01;KEGG=Os11t0201360-01
Chr11	irgsp1_rep	five_prime_UTR	5093152	5093366	.	-	.	Parent=Os11t0201360-01
Chr11	irgsp1_rep	five_prime_UTR	5093017	5093056	.	-	.	Parent=Os11t0201360-01
Chr11	irgsp1_rep	CDS	5092162	5093016	.	-	0	Parent=Os11t0201360-01
Chr11	irgsp1_rep	CDS	5091523	5091678	.	-	0	Parent=Os11t0201360-01
Chr11	irgsp1_rep	CDS	5091248	5091443	.	-	0	Parent=Os11t0201360-01
Chr11	irgsp1_rep	CDS	5089723	5089805	.	-	2	Parent=Os11t0201360-01
Chr11	irgsp1_rep	three_prime_UTR	5089294	5089722	.	-	.	Parent=Os11t0201360-01
Chr11	irgsp1_rep	mRNA	5063575	5064534	.	+	.	ID=Os11t0201400-00;Name=Os11t0201400-00;Locus_id=Os11g0201400;Note=Similar to Histone deacetylase.;Transcript_evidence=ab initio prediction;ORF_evidence=A3C9I1 (UniProt);GO=Biological Process: histone deacetylation (GO:0016575),Molecular Function: histone deacetylase activity (GO:0004407);InterPro=Histone deacetylase superfamily (IPR000286),Histone deacetylase (IPR003084),Histone deacetylase domain (IPR023801);TENOR=Os11t0201400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	5063575	5064534	.	+	0	Parent=Os11t0201400-00
Chr11	irgsp1_rep	mRNA	5098287	5099773	.	+	.	ID=Os11t0201401-00;Name=Os11t0201401-00;Locus_id=Os11g0201401;Note=Non-protein coding transcript.;Transcript_evidence=tplb0026g09 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os11t0201401-00
Chr11	irgsp1_rep	exon	5098287	5098412	.	+	.	Parent=Os11t0201401-00
Chr11	irgsp1_rep	exon	5098487	5098792	.	+	.	Parent=Os11t0201401-00
Chr11	irgsp1_rep	exon	5098948	5099773	.	+	.	Parent=Os11t0201401-00
Chr11	irgsp1_rep	mRNA	5114741	5116719	.	-	.	ID=Os11t0201441-00;Name=Os11t0201441-00;Locus_id=Os11g0201441;Note=Hypothetical protein.;Transcript_evidence=AK330829 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0201441-00
Chr11	irgsp1_rep	five_prime_UTR	5116718	5116719	.	-	.	Parent=Os11t0201441-00
Chr11	irgsp1_rep	CDS	5116310	5116717	.	-	0	Parent=Os11t0201441-00
Chr11	irgsp1_rep	three_prime_UTR	5116152	5116309	.	-	.	Parent=Os11t0201441-00
Chr11	irgsp1_rep	three_prime_UTR	5115555	5115866	.	-	.	Parent=Os11t0201441-00
Chr11	irgsp1_rep	three_prime_UTR	5114966	5115125	.	-	.	Parent=Os11t0201441-00
Chr11	irgsp1_rep	three_prime_UTR	5114741	5114885	.	-	.	Parent=Os11t0201441-00
Chr11	irgsp1_rep	mRNA	5125618	5127437	.	+	.	ID=Os11t0201540-00;Name=Os11t0201540-00;Locus_id=Os11g0201540;Note=Hypothetical protein.;Transcript_evidence=tplb0026g09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0201540-00
Chr11	irgsp1_rep	five_prime_UTR	5125618	5125718	.	+	.	Parent=Os11t0201540-00
Chr11	irgsp1_rep	five_prime_UTR	5125791	5126005	.	+	.	Parent=Os11t0201540-00
Chr11	irgsp1_rep	five_prime_UTR	5126494	5126594	.	+	.	Parent=Os11t0201540-00
Chr11	irgsp1_rep	CDS	5126595	5126861	.	+	0	Parent=Os11t0201540-00
Chr11	irgsp1_rep	three_prime_UTR	5126862	5127437	.	+	.	Parent=Os11t0201540-00
Chr11	irgsp1_rep	mRNA	5141880	5149959	.	-	.	ID=Os11t0201900-00;Name=Os11t0201900-00;Locus_id=Os11g0201900;Oryzabase Gene Symbol Synonym(s)=OsFbox582%2C Os_F0511;Oryzabase Gene Name Synonym(s)=F-box protein 582;Note=Similar to F-box domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q53LE5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17349;TENOR=Os11t0201900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	5149030	5149959	.	-	0	Parent=Os11t0201900-00
Chr11	irgsp1_rep	CDS	5148416	5148569	.	-	0	Parent=Os11t0201900-00
Chr11	irgsp1_rep	CDS	5143417	5144393	.	-	2	Parent=Os11t0201900-00
Chr11	irgsp1_rep	CDS	5143040	5143201	.	-	0	Parent=Os11t0201900-00
Chr11	irgsp1_rep	CDS	5142827	5142963	.	-	0	Parent=Os11t0201900-00
Chr11	irgsp1_rep	CDS	5141880	5141910	.	-	1	Parent=Os11t0201900-00
Chr11	irgsp1_rep	mRNA	5143049	5144355	.	+	.	ID=Os11t0201933-00;Name=Os11t0201933-00;Locus_id=Os11g0201933;Note=Hypothetical protein.;Transcript_evidence=tplb0026g09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0201933-00
Chr11	irgsp1_rep	five_prime_UTR	5143049	5143293	.	+	.	Parent=Os11t0201933-00
Chr11	irgsp1_rep	five_prime_UTR	5143471	5143938	.	+	.	Parent=Os11t0201933-00
Chr11	irgsp1_rep	CDS	5143939	5144355	.	+	0	Parent=Os11t0201933-00
Chr11	irgsp1_rep	mRNA	5148658	5150007	.	+	.	ID=Os11t0201966-00;Name=Os11t0201966-00;Locus_id=Os11g0201966;Note=Hypothetical protein.;Transcript_evidence=tplb0026g09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0201966-00
Chr11	irgsp1_rep	five_prime_UTR	5148658	5148936	.	+	.	Parent=Os11t0201966-00
Chr11	irgsp1_rep	five_prime_UTR	5149121	5149330	.	+	.	Parent=Os11t0201966-00
Chr11	irgsp1_rep	CDS	5149331	5150007	.	+	0	Parent=Os11t0201966-00
Chr11	irgsp1_rep	mRNA	5153098	5156354	.	-	.	ID=Os11t0202000-01;Name=Os11t0202000-01;Locus_id=Os11g0202000;Oryzabase Gene Symbol Synonym(s)=OsFbox583%2C Os_F0363;Oryzabase Gene Name Synonym(s)=F-box protein 583;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK063427 (DDBJ%2C Best hit);ORF_evidence=B8ACN5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=001-115-D03;Oryzabase=17350;TENOR=Os11t0202000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	5156210	5156354	.	-	.	Parent=Os11t0202000-01
Chr11	irgsp1_rep	CDS	5156168	5156209	.	-	0	Parent=Os11t0202000-01
Chr11	irgsp1_rep	CDS	5155129	5156061	.	-	0	Parent=Os11t0202000-01
Chr11	irgsp1_rep	CDS	5154781	5154942	.	-	0	Parent=Os11t0202000-01
Chr11	irgsp1_rep	CDS	5154537	5154690	.	-	0	Parent=Os11t0202000-01
Chr11	irgsp1_rep	CDS	5153325	5153467	.	-	2	Parent=Os11t0202000-01
Chr11	irgsp1_rep	three_prime_UTR	5153098	5153324	.	-	.	Parent=Os11t0202000-01
Chr11	irgsp1_rep	mRNA	5155359	5156354	.	-	.	ID=Os11t0202000-02;Name=Os11t0202000-02;Locus_id=Os11g0202000;Oryzabase Gene Symbol Synonym(s)=OsFbox583%2C Os_F0363;Oryzabase Gene Name Synonym(s)=F-box protein 583;Note=Hypothetical conserved gene.;Transcript_evidence=AK122020 (DDBJ%2C Best hit);ORF_evidence=B8ACN5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033111N03;Oryzabase=17350;TENOR=Os11t0202000-02
Chr11	irgsp1_rep	five_prime_UTR	5156080	5156354	.	-	.	Parent=Os11t0202000-02
Chr11	irgsp1_rep	CDS	5155359	5156079	.	-	0	Parent=Os11t0202000-02
Chr11	irgsp1_rep	mRNA	5154791	5156057	.	+	.	ID=Os11t0202100-00;Name=Os11t0202100-00;Locus_id=Os11g0202100;Note=Hypothetical protein.;Transcript_evidence=tplb0026g09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0202100-00
Chr11	irgsp1_rep	five_prime_UTR	5154791	5154972	.	+	.	Parent=Os11t0202100-00
Chr11	irgsp1_rep	five_prime_UTR	5155124	5155735	.	+	.	Parent=Os11t0202100-00
Chr11	irgsp1_rep	CDS	5155736	5156057	.	+	0	Parent=Os11t0202100-00
Chr11	irgsp1_rep	mRNA	5164454	5166686	.	-	.	ID=Os11t0202200-01;Name=Os11t0202200-01;Locus_id=Os11g0202200;Oryzabase Gene Symbol Synonym(s)=OsFbox584%2C Os_F0231;Oryzabase Gene Name Synonym(s)=F-box protein 584;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK071094 (DDBJ%2C Best hit);ORF_evidence=Q53LD7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023080G15;Oryzabase=17351;Expression=AK071094;TENOR=Os11t0202200-01;KEGG=Os11t0202200-01
Chr11	irgsp1_rep	five_prime_UTR	5166584	5166686	.	-	.	Parent=Os11t0202200-01
Chr11	irgsp1_rep	five_prime_UTR	5166437	5166469	.	-	.	Parent=Os11t0202200-01
Chr11	irgsp1_rep	CDS	5165549	5166436	.	-	0	Parent=Os11t0202200-01
Chr11	irgsp1_rep	CDS	5165270	5165431	.	-	0	Parent=Os11t0202200-01
Chr11	irgsp1_rep	CDS	5165013	5165166	.	-	0	Parent=Os11t0202200-01
Chr11	irgsp1_rep	CDS	5164691	5164725	.	-	2	Parent=Os11t0202200-01
Chr11	irgsp1_rep	three_prime_UTR	5164454	5164690	.	-	.	Parent=Os11t0202200-01
Chr11	irgsp1_rep	mRNA	5168904	5172092	.	-	.	ID=Os11t0202300-01;Name=Os11t0202300-01;Locus_id=Os11g0202300;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK066860 (DDBJ%2C Best hit);ORF_evidence=Q53LF7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013088K08;Expression=AK066860;TENOR=Os11t0202300-01;KEGG=Os11t0202300-01
Chr11	irgsp1_rep	five_prime_UTR	5171721	5172092	.	-	.	Parent=Os11t0202300-01
Chr11	irgsp1_rep	CDS	5171250	5171720	.	-	0	Parent=Os11t0202300-01
Chr11	irgsp1_rep	CDS	5171113	5171115	.	-	0	Parent=Os11t0202300-01
Chr11	irgsp1_rep	three_prime_UTR	5170839	5171112	.	-	.	Parent=Os11t0202300-01
Chr11	irgsp1_rep	three_prime_UTR	5168904	5168949	.	-	.	Parent=Os11t0202300-01
Chr11	irgsp1_rep	mRNA	5168780	5171213	.	-	.	ID=Os11t0202300-02;Name=Os11t0202300-02;Locus_id=Os11g0202300;Note=Similar to F-box domain containing protein%2C expressed.;Transcript_evidence=AK068673 (DDBJ%2C Best hit);ORF_evidence=Q2R949 (UniProt);NIAS_FLcDNA=J013158N23;TENOR=Os11t0202300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	5170839	5171213	.	-	0	Parent=Os11t0202300-02
Chr11	irgsp1_rep	CDS	5170560	5170721	.	-	0	Parent=Os11t0202300-02
Chr11	irgsp1_rep	CDS	5170319	5170472	.	-	0	Parent=Os11t0202300-02
Chr11	irgsp1_rep	CDS	5169141	5169322	.	-	2	Parent=Os11t0202300-02
Chr11	irgsp1_rep	three_prime_UTR	5168780	5169140	.	-	.	Parent=Os11t0202300-02
Chr11	irgsp1_rep	mRNA	5171522	5172260	.	+	.	ID=Os11t0202350-00;Name=Os11t0202350-00;Locus_id=Os11g0202350;Note=Conserved hypothetical protein.;Transcript_evidence=CT829693 (DDBJ%2C Best hit);ORF_evidence=NP_001176413.1 (RefSeq);TENOR=Os11t0202350-00;KEGG=Os11t0202350-00
Chr11	irgsp1_rep	five_prime_UTR	5171522	5171538	.	+	.	Parent=Os11t0202350-00
Chr11	irgsp1_rep	CDS	5171539	5172078	.	+	0	Parent=Os11t0202350-00
Chr11	irgsp1_rep	three_prime_UTR	5172079	5172260	.	+	.	Parent=Os11t0202350-00
Chr11	irgsp1_rep	mRNA	5173514	5176123	.	-	.	ID=Os11t0202400-00;Name=Os11t0202400-00;Locus_id=Os11g0202400;Oryzabase Gene Symbol Synonym(s)=OsFbox585%2C Os_F0294;Oryzabase Gene Name Synonym(s)=F-box protein 585;Note=Similar to F-box domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q53LF7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17352;TENOR=Os11t0202400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	5175227	5176123	.	-	0	Parent=Os11t0202400-00
Chr11	irgsp1_rep	CDS	5174948	5175014	.	-	0	Parent=Os11t0202400-00
Chr11	irgsp1_rep	CDS	5173514	5173734	.	-	2	Parent=Os11t0202400-00
Chr11	irgsp1_rep	mRNA	5174961	5176147	.	+	.	ID=Os11t0202450-00;Name=Os11t0202450-00;Locus_id=Os11g0202450;Note=Hypothetical protein.;Transcript_evidence=tplb0026g09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0202450-00
Chr11	irgsp1_rep	five_prime_UTR	5174961	5174999	.	+	.	Parent=Os11t0202450-00
Chr11	irgsp1_rep	CDS	5175000	5175292	.	+	0	Parent=Os11t0202450-00
Chr11	irgsp1_rep	CDS	5175383	5175449	.	+	1	Parent=Os11t0202450-00
Chr11	irgsp1_rep	three_prime_UTR	5175450	5176147	.	+	.	Parent=Os11t0202450-00
Chr11	irgsp1_rep	mRNA	5178433	5178938	.	+	.	ID=Os11t0202500-00;Name=Os11t0202500-00;Locus_id=Os11g0202500;Note=UDP-glucuronosyl/UDP-glucosyltransferase domain containing protein.;Transcript_evidence=EU956765 (DDBJ);ORF_evidence=Q53LF8 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os11t0202500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	5178433	5178435	.	+	.	Parent=Os11t0202500-00
Chr11	irgsp1_rep	CDS	5178436	5178930	.	+	0	Parent=Os11t0202500-00
Chr11	irgsp1_rep	three_prime_UTR	5178931	5178938	.	+	.	Parent=Os11t0202500-00
Chr11	irgsp1_rep	mRNA	5182412	5188002	.	+	.	ID=Os11t0202600-01;Name=Os11t0202600-01;Locus_id=Os11g0202600;Note=Similar to OSIGBa0126J24.2 protein.;Transcript_evidence=AK102530 (DDBJ%2C Best hit);ORF_evidence=Q01N07 (UniProt);GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Putative harbinger transposase-derived nuclease (IPR006912);NIAS_FLcDNA=J033096D13;TENOR=Os11t0202600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	5182412	5182538	.	+	.	Parent=Os11t0202600-01
Chr11	irgsp1_rep	five_prime_UTR	5182657	5182891	.	+	.	Parent=Os11t0202600-01
Chr11	irgsp1_rep	five_prime_UTR	5182982	5183069	.	+	.	Parent=Os11t0202600-01
Chr11	irgsp1_rep	five_prime_UTR	5183243	5183414	.	+	.	Parent=Os11t0202600-01
Chr11	irgsp1_rep	CDS	5183415	5183417	.	+	0	Parent=Os11t0202600-01
Chr11	irgsp1_rep	CDS	5186715	5187956	.	+	0	Parent=Os11t0202600-01
Chr11	irgsp1_rep	three_prime_UTR	5187957	5188002	.	+	.	Parent=Os11t0202600-01
Chr11	irgsp1_rep	mRNA	5196333	5197162	.	+	.	ID=Os11t0202900-01;Name=Os11t0202900-01;Locus_id=Os11g0202900;Note=Hypothetical gene.;Transcript_evidence=AK241543 (DDBJ%2C Best hit);ORF_evidence=Q75J43 (UniProt);NIAS_FLcDNA=J065175N13;TENOR=Os11t0202900-01
Chr11	irgsp1_rep	five_prime_UTR	5196333	5196785	.	+	.	Parent=Os11t0202900-01
Chr11	irgsp1_rep	CDS	5196786	5197022	.	+	0	Parent=Os11t0202900-01
Chr11	irgsp1_rep	three_prime_UTR	5197023	5197162	.	+	.	Parent=Os11t0202900-01
Chr11	irgsp1_rep	mRNA	5223773	5225109	.	+	.	ID=Os11t0203300-01;Name=Os11t0203300-01;Locus_id=Os11g0203300;RAP-DB Gene Symbol Synonym(s)=SODX;RAP-DB Gene Name Synonym(s)=Superoxide DismutaseX;Note=Superoxide dismutaseX%2C Target of miR398b%2C Resistance to rice blast disease;Transcript_evidence=Inferred from literature;ORF_evidence=Q53LD2;Manual Curation=February 15%2C 2019;Literature_PMID=30632163
Chr11	irgsp1_rep	CDS	5223773	5224286	.	+	0	Parent=Os11t0203300-01
Chr11	irgsp1_rep	CDS	5225057	5225109	.	+	2	Parent=Os11t0203300-01
Chr11	irgsp1_rep	mRNA	5238445	5239971	.	-	.	ID=Os11t0203400-01;Name=Os11t0203400-01;Locus_id=Os11g0203400;Note=Hypothetical conserved gene.;Transcript_evidence=AK105579 (DDBJ%2C Best hit);ORF_evidence=Q6ZI94 (UniProt);NIAS_FLcDNA=001-128-E02;Expression=AK105579;TENOR=Os11t0203400-01;KEGG=Os11t0203400-01
Chr11	irgsp1_rep	five_prime_UTR	5239598	5239971	.	-	.	Parent=Os11t0203400-01
Chr11	irgsp1_rep	CDS	5239418	5239597	.	-	0	Parent=Os11t0203400-01
Chr11	irgsp1_rep	three_prime_UTR	5239269	5239417	.	-	.	Parent=Os11t0203400-01
Chr11	irgsp1_rep	three_prime_UTR	5238445	5239193	.	-	.	Parent=Os11t0203400-01
Chr11	irgsp1_rep	mRNA	5258255	5266068	.	-	.	ID=Os11t0204100-01;Name=Os11t0204100-01;Locus_id=Os11g0204100;Note=Conserved hypothetical protein.;Transcript_evidence=AK111130 (DDBJ%2C Best hit);ORF_evidence=Q53LL2 (UniProt);NIAS_FLcDNA=002-176-C11;Expression=AK111130;TENOR=Os11t0204100-01;KEGG=Os11t0204100-01
Chr11	irgsp1_rep	five_prime_UTR	5265556	5266068	.	-	.	Parent=Os11t0204100-01
Chr11	irgsp1_rep	CDS	5265503	5265555	.	-	0	Parent=Os11t0204100-01
Chr11	irgsp1_rep	CDS	5265349	5265383	.	-	1	Parent=Os11t0204100-01
Chr11	irgsp1_rep	CDS	5258572	5258672	.	-	2	Parent=Os11t0204100-01
Chr11	irgsp1_rep	three_prime_UTR	5258255	5258571	.	-	.	Parent=Os11t0204100-01
Chr11	irgsp1_rep	mRNA	5258104	5259500	.	-	.	ID=Os11t0204100-02;Name=Os11t0204100-02;Locus_id=Os11g0204100;Note=Hypothetical conserved gene.;Transcript_evidence=AK071941 (DDBJ%2C Best hit);ORF_evidence=Q53LL2 (UniProt);NIAS_FLcDNA=J013085D16;TENOR=Os11t0204100-02;KEGG=Os11t0204100-02
Chr11	irgsp1_rep	five_prime_UTR	5259476	5259500	.	-	.	Parent=Os11t0204100-02
Chr11	irgsp1_rep	CDS	5259164	5259475	.	-	0	Parent=Os11t0204100-02
Chr11	irgsp1_rep	three_prime_UTR	5258104	5259163	.	-	.	Parent=Os11t0204100-02
Chr11	irgsp1_rep	mRNA	5273137	5275359	.	-	.	ID=Os11t0204500-01;Name=Os11t0204500-01;Locus_id=Os11g0204500;Note=Conserved hypothetical protein.;Transcript_evidence=AK107519 (DDBJ%2C Best hit);ORF_evidence=Q53L93 (UniProt);NIAS_FLcDNA=002-129-F07;Expression=AK107519;TENOR=Os11t0204500-01;KEGG=Os11t0204500-01
Chr11	irgsp1_rep	five_prime_UTR	5273798	5275359	.	-	.	Parent=Os11t0204500-01
Chr11	irgsp1_rep	CDS	5273645	5273797	.	-	0	Parent=Os11t0204500-01
Chr11	irgsp1_rep	CDS	5273423	5273566	.	-	0	Parent=Os11t0204500-01
Chr11	irgsp1_rep	three_prime_UTR	5273137	5273422	.	-	.	Parent=Os11t0204500-01
Chr11	irgsp1_rep	mRNA	5276417	5279896	.	+	.	ID=Os11t0204600-01;Name=Os11t0204600-01;Locus_id=Os11g0204600;Note=Similar to Glucose-1-phosphate adenylyltransferase.;Transcript_evidence=AK099643 (DDBJ%2C Best hit);ORF_evidence=C3W8L1 (UniProt);NIAS_FLcDNA=J013060N23;TENOR=Os11t0204600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	5276417	5277352	.	+	.	Parent=Os11t0204600-01
Chr11	irgsp1_rep	CDS	5277353	5277436	.	+	0	Parent=Os11t0204600-01
Chr11	irgsp1_rep	CDS	5278155	5278244	.	+	0	Parent=Os11t0204600-01
Chr11	irgsp1_rep	CDS	5278345	5278414	.	+	0	Parent=Os11t0204600-01
Chr11	irgsp1_rep	CDS	5278505	5278515	.	+	2	Parent=Os11t0204600-01
Chr11	irgsp1_rep	three_prime_UTR	5278516	5278560	.	+	.	Parent=Os11t0204600-01
Chr11	irgsp1_rep	three_prime_UTR	5279036	5279116	.	+	.	Parent=Os11t0204600-01
Chr11	irgsp1_rep	three_prime_UTR	5279592	5279896	.	+	.	Parent=Os11t0204600-01
Chr11	irgsp1_rep	mRNA	5282088	5284666	.	+	.	ID=Os11t0204800-01;Name=Os11t0204800-01;Locus_id=Os11g0204800;Note=Similar to Wali7 protein (Fragment).;Transcript_evidence=AK100488 (DDBJ%2C Best hit);ORF_evidence=Q43661 (UniProt);InterPro=Domain of unknown function DUF3700 (IPR024286);NIAS_FLcDNA=J023098C20;Expression=AK100488;TENOR=Os11t0204800-01;KEGG=Os11t0204800-01
Chr11	irgsp1_rep	five_prime_UTR	5282088	5282361	.	+	.	Parent=Os11t0204800-01
Chr11	irgsp1_rep	CDS	5282362	5282589	.	+	0	Parent=Os11t0204800-01
Chr11	irgsp1_rep	three_prime_UTR	5282590	5284666	.	+	.	Parent=Os11t0204800-01
Chr11	irgsp1_rep	mRNA	5297467	5298892	.	-	.	ID=Os11t0205200-00;Name=Os11t0205200-00;Locus_id=Os11g0205200;Note=Conserved hypothetical protein.;Transcript_evidence=BT037767 (DDBJ);ORF_evidence=NP_001176418.1 (RefSeq);TENOR=Os11t0205200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	5298569	5298892	.	-	0	Parent=Os11t0205200-00
Chr11	irgsp1_rep	CDS	5298092	5298279	.	-	0	Parent=Os11t0205200-00
Chr11	irgsp1_rep	CDS	5297467	5298013	.	-	1	Parent=Os11t0205200-00
Chr11	irgsp1_rep	mRNA	5322579	5323208	.	+	.	ID=Os11t0205300-00;Name=Os11t0205300-00;Locus_id=Os11g0205300;Note=Non-protein coding transcript.;Transcript_evidence=CT835679 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os11t0205300-00
Chr11	irgsp1_rep	exon	5322579	5323208	.	+	.	Parent=Os11t0205300-00
Chr11	irgsp1_rep	mRNA	5297615	5299448	.	+	.	ID=Os11t0205301-00;Name=Os11t0205301-00;Locus_id=Os11g0205301;Note=Non-protein coding transcript.;Transcript_evidence=BT019283 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0205301-00
Chr11	irgsp1_rep	exon	5297615	5297728	.	+	.	Parent=Os11t0205301-00
Chr11	irgsp1_rep	exon	5298650	5298910	.	+	.	Parent=Os11t0205301-00
Chr11	irgsp1_rep	exon	5299015	5299161	.	+	.	Parent=Os11t0205301-00
Chr11	irgsp1_rep	exon	5299257	5299448	.	+	.	Parent=Os11t0205301-00
Chr11	irgsp1_rep	mRNA	5325801	5327659	.	-	.	ID=Os11t0205500-01;Name=Os11t0205500-01;Locus_id=Os11g0205500;Note=Similar to cDNA clone:J023056F18%2C full insert sequence.;Transcript_evidence=AK121578 (DDBJ%2C Best hit);ORF_evidence=B8BJK8 (UniProt);NIAS_FLcDNA=J033036K16;TENOR=Os11t0205500-01
Chr11	irgsp1_rep	five_prime_UTR	5327614	5327659	.	-	.	Parent=Os11t0205500-01
Chr11	irgsp1_rep	CDS	5325801	5327613	.	-	0	Parent=Os11t0205500-01
Chr11	irgsp1_rep	mRNA	5324768	5327659	.	-	.	ID=Os11t0205500-02;Name=Os11t0205500-02;Locus_id=Os11g0205500;Note=Protein of unknown function DUF3615 domain containing protein.;Transcript_evidence=AK072329 (DDBJ%2C Best hit);ORF_evidence=B8BJK8 (UniProt);InterPro=Protein of unknown function DUF3615 (IPR022059);NIAS_FLcDNA=J023039E06;Expression=AK072329;TENOR=Os11t0205500-02;KEGG=Os11t0205500-02
Chr11	irgsp1_rep	five_prime_UTR	5327614	5327659	.	-	.	Parent=Os11t0205500-02
Chr11	irgsp1_rep	CDS	5325763	5327613	.	-	0	Parent=Os11t0205500-02
Chr11	irgsp1_rep	CDS	5325413	5325662	.	-	0	Parent=Os11t0205500-02
Chr11	irgsp1_rep	CDS	5325037	5325287	.	-	2	Parent=Os11t0205500-02
Chr11	irgsp1_rep	three_prime_UTR	5324768	5325036	.	-	.	Parent=Os11t0205500-02
Chr11	irgsp1_rep	mRNA	5336615	5339804	.	-	.	ID=Os11t0205800-01;Name=Os11t0205800-01;Locus_id=Os11g0205800;Oryzabase Gene Symbol Synonym(s)=Fbox-14;Oryzabase Gene Name Synonym(s)=F-box family-14;Note=Similar to F-box domain containing protein%2C expressed.;Transcript_evidence=AK241605 (DDBJ%2C Best hit);ORF_evidence=Q2R949 (UniProt);NIAS_FLcDNA=J065184E20;Oryzabase=17617;TENOR=Os11t0205800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	5339443	5339804	.	-	.	Parent=Os11t0205800-01
Chr11	irgsp1_rep	CDS	5339218	5339442	.	-	0	Parent=Os11t0205800-01
Chr11	irgsp1_rep	three_prime_UTR	5336615	5339217	.	-	.	Parent=Os11t0205800-01
Chr11	irgsp1_rep	mRNA	5342926	5345614	.	-	.	ID=Os11t0205900-00;Name=Os11t0205900-00;Locus_id=Os11g0205900;Oryzabase Gene Symbol Synonym(s)=OsFbox586%2C Os_F0088%2C Fbox-13;Oryzabase Gene Name Synonym(s)=F-box protein 586%2C F-box family-13;Note=Similar to F-box domain containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R949 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17353;TENOR=Os11t0205900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	5344895	5345614	.	-	0	Parent=Os11t0205900-00
Chr11	irgsp1_rep	CDS	5344271	5344364	.	-	0	Parent=Os11t0205900-00
Chr11	irgsp1_rep	CDS	5342926	5343125	.	-	2	Parent=Os11t0205900-00
Chr11	irgsp1_rep	mRNA	5349280	5354810	.	+	.	ID=Os11t0206000-01;Name=Os11t0206000-01;Locus_id=Os11g0206000;Note=Conserved hypothetical protein.;Transcript_evidence=AK071032 (DDBJ%2C Best hit);ORF_evidence=NP_001173872.1 (RefSeq);NIAS_FLcDNA=J023075N20;TENOR=Os11t0206000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	5349280	5349525	.	+	.	Parent=Os11t0206000-01
Chr11	irgsp1_rep	CDS	5349526	5349963	.	+	0	Parent=Os11t0206000-01
Chr11	irgsp1_rep	three_prime_UTR	5349964	5350227	.	+	.	Parent=Os11t0206000-01
Chr11	irgsp1_rep	three_prime_UTR	5350357	5350578	.	+	.	Parent=Os11t0206000-01
Chr11	irgsp1_rep	three_prime_UTR	5351571	5351750	.	+	.	Parent=Os11t0206000-01
Chr11	irgsp1_rep	three_prime_UTR	5353236	5353309	.	+	.	Parent=Os11t0206000-01
Chr11	irgsp1_rep	three_prime_UTR	5354477	5354810	.	+	.	Parent=Os11t0206000-01
Chr11	irgsp1_rep	mRNA	5355998	5356393	.	-	.	ID=Os11t0206101-00;Name=Os11t0206101-00;Locus_id=Os11g0206101;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G9W6 (UniProt);TENOR=Os11t0206101-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	5356264	5356393	.	-	0	Parent=Os11t0206101-00
Chr11	irgsp1_rep	CDS	5355998	5356170	.	-	2	Parent=Os11t0206101-00
Chr11	irgsp1_rep	mRNA	5356008	5359272	.	+	.	ID=Os11t0206150-00;Name=Os11t0206150-00;Locus_id=Os11g0206150;Note=Hypothetical protein.;Transcript_evidence=tplb0060m09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0206150-00
Chr11	irgsp1_rep	five_prime_UTR	5356008	5356373	.	+	.	Parent=Os11t0206150-00
Chr11	irgsp1_rep	five_prime_UTR	5358480	5358525	.	+	.	Parent=Os11t0206150-00
Chr11	irgsp1_rep	CDS	5358526	5359272	.	+	0	Parent=Os11t0206150-00
Chr11	irgsp1_rep	mRNA	5357840	5359373	.	-	.	ID=Os11t0206200-01;Name=Os11t0206200-01;Locus_id=Os11g0206200;Note=Mitochodrial transcription termination factor-related family protein.;Transcript_evidence=AK100873 (DDBJ%2C Best hit);ORF_evidence=B9V0G5 (UniProt);InterPro=Mitochodrial transcription termination factor-related (IPR003690);NIAS_FLcDNA=J023126C15;Expression=AK100873;TENOR=Os11t0206200-01;KEGG=Os11t0206200-01
Chr11	irgsp1_rep	five_prime_UTR	5359317	5359373	.	-	.	Parent=Os11t0206200-01
Chr11	irgsp1_rep	CDS	5358096	5359316	.	-	0	Parent=Os11t0206200-01
Chr11	irgsp1_rep	three_prime_UTR	5357840	5358095	.	-	.	Parent=Os11t0206200-01
Chr11	irgsp1_rep	mRNA	5357857	5359346	.	-	.	ID=Os11t0206200-02;Name=Os11t0206200-02;Locus_id=Os11g0206200;Note=Mitochodrial transcription termination factor-related family protein.;Transcript_evidence=AK069688 (DDBJ%2C Best hit);ORF_evidence=B9V0G5 (UniProt);InterPro=Mitochodrial transcription termination factor-related (IPR003690);NIAS_FLcDNA=J023034A08;Expression=AK069688;TENOR=Os11t0206200-02;KEGG=Os11t0206200-02
Chr11	irgsp1_rep	five_prime_UTR	5359317	5359346	.	-	.	Parent=Os11t0206200-02
Chr11	irgsp1_rep	CDS	5358096	5359316	.	-	0	Parent=Os11t0206200-02
Chr11	irgsp1_rep	three_prime_UTR	5357857	5358095	.	-	.	Parent=Os11t0206200-02
Chr11	irgsp1_rep	mRNA	5364477	5370383	.	+	.	ID=Os11t0206300-01;Name=Os11t0206300-01;Locus_id=Os11g0206300;Note=Similar to Mitochondrial transcription termination factor-like family-1.;Transcript_evidence=AK288913 (DDBJ%2C Best hit);ORF_evidence=B9V0G4 (UniProt);InterPro=Mitochodrial transcription termination factor-related (IPR003690);NIAS_FLcDNA=J090081H11;TENOR=Os11t0206300-01;KEGG=Os11t0206300-01
Chr11	irgsp1_rep	five_prime_UTR	5364477	5368737	.	+	.	Parent=Os11t0206300-01
Chr11	irgsp1_rep	CDS	5368738	5369718	.	+	0	Parent=Os11t0206300-01
Chr11	irgsp1_rep	three_prime_UTR	5369719	5370383	.	+	.	Parent=Os11t0206300-01
Chr11	irgsp1_rep	mRNA	5363189	5364957	.	-	.	ID=Os11t0206400-01;Name=Os11t0206400-01;Locus_id=Os11g0206400;Note=Mitochodrial transcription termination factor-related family protein.;Transcript_evidence=AK064170 (DDBJ%2C Best hit);ORF_evidence=B9V0L2 (UniProt);InterPro=Mitochodrial transcription termination factor-related (IPR003690);NIAS_FLcDNA=002-104-A03;Expression=AK064170;TENOR=Os11t0206400-01;KEGG=Os11t0206400-01
Chr11	irgsp1_rep	five_prime_UTR	5364915	5364957	.	-	.	Parent=Os11t0206400-01
Chr11	irgsp1_rep	CDS	5363538	5364914	.	-	0	Parent=Os11t0206400-01
Chr11	irgsp1_rep	three_prime_UTR	5363189	5363537	.	-	.	Parent=Os11t0206400-01
Chr11	irgsp1_rep	mRNA	5372635	5375530	.	+	.	ID=Os11t0206600-01;Name=Os11t0206600-01;Locus_id=Os11g0206600;Note=Mitochodrial transcription termination factor-related family protein.;Transcript_evidence=AK109707 (DDBJ%2C Best hit);ORF_evidence=B9V0G6 (UniProt);InterPro=Mitochodrial transcription termination factor-related (IPR003690);NIAS_FLcDNA=002-145-G07;Expression=AK109707;TENOR=Os11t0206600-01;KEGG=Os11t0206600-01
Chr11	irgsp1_rep	five_prime_UTR	5372635	5372724	.	+	.	Parent=Os11t0206600-01
Chr11	irgsp1_rep	CDS	5372725	5373903	.	+	0	Parent=Os11t0206600-01
Chr11	irgsp1_rep	three_prime_UTR	5373904	5373919	.	+	.	Parent=Os11t0206600-01
Chr11	irgsp1_rep	three_prime_UTR	5375206	5375530	.	+	.	Parent=Os11t0206600-01
Chr11	irgsp1_rep	mRNA	5372639	5375367	.	+	.	ID=Os11t0206600-02;Name=Os11t0206600-02;Locus_id=Os11g0206600;Note=Mitochodrial transcription termination factor-related family protein.;Transcript_evidence=AK108795 (DDBJ%2C Best hit);ORF_evidence=B9V0G6 (UniProt);InterPro=Mitochodrial transcription termination factor-related (IPR003690);NIAS_FLcDNA=002-151-B11;Expression=AK108795;TENOR=Os11t0206600-02;KEGG=Os11t0206600-02
Chr11	irgsp1_rep	five_prime_UTR	5372639	5372724	.	+	.	Parent=Os11t0206600-02
Chr11	irgsp1_rep	CDS	5372725	5373903	.	+	0	Parent=Os11t0206600-02
Chr11	irgsp1_rep	three_prime_UTR	5373904	5373919	.	+	.	Parent=Os11t0206600-02
Chr11	irgsp1_rep	three_prime_UTR	5375163	5375367	.	+	.	Parent=Os11t0206600-02
Chr11	irgsp1_rep	mRNA	5373695	5374181	.	+	.	ID=Os11t0206600-03;Name=Os11t0206600-03;Locus_id=Os11g0206600;Note=Similar to Mitochondrial transcription termination factor-like family-3.;Transcript_evidence=AK121822 (DDBJ%2C Best hit);ORF_evidence=B9V0G6 (UniProt);NIAS_FLcDNA=J033099D16;Expression=AK121822;TENOR=Os11t0206600-03;KEGG=Os11t0206600-03
Chr11	irgsp1_rep	five_prime_UTR	5373695	5373696	.	+	.	Parent=Os11t0206600-03
Chr11	irgsp1_rep	CDS	5373697	5373903	.	+	0	Parent=Os11t0206600-03
Chr11	irgsp1_rep	three_prime_UTR	5373904	5374181	.	+	.	Parent=Os11t0206600-03
Chr11	irgsp1_rep	mRNA	5378426	5383879	.	-	.	ID=Os11t0206700-01;Name=Os11t0206700-01;Locus_id=Os11g0206700;CGSNL Gene Symbol=PXLG2;CGSNL Gene Name=PUTATIVE EXTRA-LARGE G PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsPXLG2;Oryzabase Gene Name Synonym(s)=putative extra-large G protein 2;Note=Guanine nucleotide binding protein (G-protein)%2C alpha subunit family protein.;Transcript_evidence=AK069964 (DDBJ%2C Best hit);ORF_evidence=NP_174475.1 (RefSeq);GO=Biological Process: signal transduction (GO:0007165),Biological Process: G-protein coupled receptor protein signaling pathway (GO:0007186),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: guanyl nucleotide binding (GO:0019001);InterPro=Guanine nucleotide binding protein (G-protein)%2C alpha subunit (IPR001019),G protein alpha subunit%2C helical insertion (IPR011025);NIAS_FLcDNA=J023039G05;Oryzabase=23516;Expression=AK069964;TENOR=Os11t0206700-01;KEGG=Os11t0206700-01
Chr11	irgsp1_rep	five_prime_UTR	5383623	5383879	.	-	.	Parent=Os11t0206700-01
Chr11	irgsp1_rep	CDS	5382666	5383622	.	-	0	Parent=Os11t0206700-01
Chr11	irgsp1_rep	CDS	5382441	5382578	.	-	0	Parent=Os11t0206700-01
Chr11	irgsp1_rep	CDS	5381678	5381782	.	-	0	Parent=Os11t0206700-01
Chr11	irgsp1_rep	CDS	5381398	5381580	.	-	0	Parent=Os11t0206700-01
Chr11	irgsp1_rep	CDS	5380834	5381011	.	-	0	Parent=Os11t0206700-01
Chr11	irgsp1_rep	CDS	5380511	5380755	.	-	2	Parent=Os11t0206700-01
Chr11	irgsp1_rep	CDS	5379876	5380048	.	-	0	Parent=Os11t0206700-01
Chr11	irgsp1_rep	CDS	5379599	5379796	.	-	1	Parent=Os11t0206700-01
Chr11	irgsp1_rep	CDS	5378868	5379261	.	-	1	Parent=Os11t0206700-01
Chr11	irgsp1_rep	three_prime_UTR	5378426	5378867	.	-	.	Parent=Os11t0206700-01
Chr11	irgsp1_rep	mRNA	5378625	5381784	.	-	.	ID=Os11t0206700-02;Name=Os11t0206700-02;Locus_id=Os11g0206700;CGSNL Gene Symbol=PXLG2;CGSNL Gene Name=PUTATIVE EXTRA-LARGE G PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsPXLG2;Oryzabase Gene Name Synonym(s)=putative extra-large G protein 2;Note=Similar to predicted protein.;Transcript_evidence=AK119192 (DDBJ%2C Best hit);ORF_evidence=XP_002890957.1 (RefSeq);GO=Biological Process: signal transduction (GO:0007165),Biological Process: G-protein coupled receptor protein signaling pathway (GO:0007186),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: guanyl nucleotide binding (GO:0019001);InterPro=Guanine nucleotide binding protein (G-protein)%2C alpha subunit (IPR001019),G protein alpha subunit%2C helical insertion (IPR011025);NIAS_FLcDNA=001-041-B11;Oryzabase=23516;Expression=AK119192;TENOR=Os11t0206700-02;KEGG=Os11t0206700-02
Chr11	irgsp1_rep	five_prime_UTR	5381783	5381784	.	-	.	Parent=Os11t0206700-02
Chr11	irgsp1_rep	CDS	5381678	5381782	.	-	0	Parent=Os11t0206700-02
Chr11	irgsp1_rep	CDS	5381398	5381580	.	-	0	Parent=Os11t0206700-02
Chr11	irgsp1_rep	CDS	5380834	5381011	.	-	0	Parent=Os11t0206700-02
Chr11	irgsp1_rep	CDS	5380511	5380755	.	-	2	Parent=Os11t0206700-02
Chr11	irgsp1_rep	CDS	5379876	5380048	.	-	0	Parent=Os11t0206700-02
Chr11	irgsp1_rep	CDS	5379599	5379796	.	-	1	Parent=Os11t0206700-02
Chr11	irgsp1_rep	CDS	5378868	5379261	.	-	1	Parent=Os11t0206700-02
Chr11	irgsp1_rep	three_prime_UTR	5378625	5378867	.	-	.	Parent=Os11t0206700-02
Chr11	irgsp1_rep	mRNA	5394808	5395267	.	-	.	ID=Os11t0206850-00;Name=Os11t0206850-00;Locus_id=Os11g0206850;Note=Conserved hypothetical protein.;Transcript_evidence=AK107927 (DDBJ%2C Secondary hit);ORF_evidence=NP_001048302.1 (RefSeq);TENOR=Os11t0206850-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	5395249	5395267	.	-	.	Parent=Os11t0206850-00
Chr11	irgsp1_rep	CDS	5395177	5395248	.	-	0	Parent=Os11t0206850-00
Chr11	irgsp1_rep	three_prime_UTR	5394808	5395176	.	-	.	Parent=Os11t0206850-00
Chr11	irgsp1_rep	mRNA	5399320	5407997	.	+	.	ID=Os11t0207000-01;Name=Os11t0207000-01;Locus_id=Os11g0207000;CGSNL Gene Symbol=SEU;CGSNL Gene Name=SEUSS;Oryzabase Gene Symbol Synonym(s)=OsSEU%2C OsSEU1%2C SEU1;Oryzabase Gene Name Synonym(s)=OsSEUSS%2C OsSEUSS 1%2C SEUSS 1;Note=LIM binding protein domain containing protein.;Transcript_evidence=AK065084 (DDBJ%2C Best hit);ORF_evidence=NP_001067463.1 (RefSeq);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: transcription cofactor activity (GO:0003712);InterPro=LIM binding protein (IPR002691);NIAS_FLcDNA=J013001L16;Oryzabase=21063;Expression=AK065084;TENOR=Os11t0207000-01;KEGG=Os11t0207000-01
Chr11	irgsp1_rep	five_prime_UTR	5399320	5400087	.	+	.	Parent=Os11t0207000-01
Chr11	irgsp1_rep	CDS	5400088	5401158	.	+	0	Parent=Os11t0207000-01
Chr11	irgsp1_rep	CDS	5401253	5401375	.	+	0	Parent=Os11t0207000-01
Chr11	irgsp1_rep	CDS	5401563	5401611	.	+	0	Parent=Os11t0207000-01
Chr11	irgsp1_rep	CDS	5401690	5401904	.	+	2	Parent=Os11t0207000-01
Chr11	irgsp1_rep	CDS	5402020	5402088	.	+	0	Parent=Os11t0207000-01
Chr11	irgsp1_rep	CDS	5402214	5402308	.	+	0	Parent=Os11t0207000-01
Chr11	irgsp1_rep	CDS	5405634	5405727	.	+	1	Parent=Os11t0207000-01
Chr11	irgsp1_rep	CDS	5405941	5406010	.	+	0	Parent=Os11t0207000-01
Chr11	irgsp1_rep	CDS	5406539	5407497	.	+	2	Parent=Os11t0207000-01
Chr11	irgsp1_rep	three_prime_UTR	5407498	5407997	.	+	.	Parent=Os11t0207000-01
Chr11	irgsp1_rep	mRNA	5405958	5408130	.	+	.	ID=Os11t0207000-02;Name=Os11t0207000-02;Locus_id=Os11g0207000;CGSNL Gene Symbol=SEU;CGSNL Gene Name=SEUSS;Oryzabase Gene Symbol Synonym(s)=OsSEU%2C OsSEU1%2C SEU1;Oryzabase Gene Name Synonym(s)=OsSEUSS%2C OsSEUSS 1%2C SEUSS 1;Note=Hypothetical conserved gene.;Transcript_evidence=AK062074 (DDBJ%2C Best hit);ORF_evidence=B9G9X1 (UniProt);NIAS_FLcDNA=001-044-F02;Oryzabase=21063;Expression=AK062074;TENOR=Os11t0207000-02;KEGG=Os11t0207000-02
Chr11	irgsp1_rep	five_prime_UTR	5405958	5405958	.	+	.	Parent=Os11t0207000-02
Chr11	irgsp1_rep	CDS	5405959	5406010	.	+	0	Parent=Os11t0207000-02
Chr11	irgsp1_rep	CDS	5406539	5407497	.	+	2	Parent=Os11t0207000-02
Chr11	irgsp1_rep	three_prime_UTR	5407498	5408130	.	+	.	Parent=Os11t0207000-02
Chr11	irgsp1_rep	mRNA	5419433	5427714	.	+	.	ID=Os11t0207100-01;Name=Os11t0207100-01;Locus_id=Os11g0207100;CGSNL Gene Symbol=SEU2;CGSNL Gene Name=SEUSS 2;Oryzabase Gene Symbol Synonym(s)=OsSEU2;Oryzabase Gene Name Synonym(s)=OsSEUSS 2;Note=Similar to SEU3A protein.;Transcript_evidence=AK065129 (DDBJ%2C Best hit);ORF_evidence=Q6H972 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: transcription cofactor activity (GO:0003712);InterPro=LIM binding protein (IPR002691);NIAS_FLcDNA=J013001P12;Oryzabase=21874;Expression=AK065129;TENOR=Os11t0207100-01;KEGG=Os11t0207100-01
Chr11	irgsp1_rep	five_prime_UTR	5419433	5419753	.	+	.	Parent=Os11t0207100-01
Chr11	irgsp1_rep	five_prime_UTR	5420194	5420327	.	+	.	Parent=Os11t0207100-01
Chr11	irgsp1_rep	CDS	5420328	5421422	.	+	0	Parent=Os11t0207100-01
Chr11	irgsp1_rep	CDS	5421517	5421636	.	+	0	Parent=Os11t0207100-01
Chr11	irgsp1_rep	CDS	5421814	5421862	.	+	0	Parent=Os11t0207100-01
Chr11	irgsp1_rep	CDS	5421939	5422153	.	+	2	Parent=Os11t0207100-01
Chr11	irgsp1_rep	CDS	5422258	5422326	.	+	0	Parent=Os11t0207100-01
Chr11	irgsp1_rep	CDS	5422451	5422545	.	+	0	Parent=Os11t0207100-01
Chr11	irgsp1_rep	CDS	5425188	5425281	.	+	1	Parent=Os11t0207100-01
Chr11	irgsp1_rep	CDS	5425495	5425564	.	+	0	Parent=Os11t0207100-01
Chr11	irgsp1_rep	CDS	5426183	5427177	.	+	2	Parent=Os11t0207100-01
Chr11	irgsp1_rep	three_prime_UTR	5427178	5427714	.	+	.	Parent=Os11t0207100-01
Chr11	irgsp1_rep	mRNA	5460669	5464646	.	+	.	ID=Os11t0207200-01;Name=Os11t0207200-01;Locus_id=Os11g0207200;Oryzabase Gene Symbol Synonym(s)=OsMAPKKKalpha%2C MAPKKKalpha;Oryzabase Gene Name Synonym(s)=MAPK kinase kinase alpha;Note=Similar to MAP3Ka.;Transcript_evidence=AK120290 (DDBJ%2C Best hit);ORF_evidence=NP_001130692.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013050F18;Oryzabase=21735;Expression=AK120290;TENOR=Os11t0207200-01;KEGG=Os11t0207200-01
Chr11	irgsp1_rep	five_prime_UTR	5460669	5461665	.	+	.	Parent=Os11t0207200-01
Chr11	irgsp1_rep	CDS	5461666	5462168	.	+	0	Parent=Os11t0207200-01
Chr11	irgsp1_rep	CDS	5462274	5462361	.	+	1	Parent=Os11t0207200-01
Chr11	irgsp1_rep	CDS	5462449	5462511	.	+	0	Parent=Os11t0207200-01
Chr11	irgsp1_rep	CDS	5462785	5462945	.	+	0	Parent=Os11t0207200-01
Chr11	irgsp1_rep	CDS	5463034	5463109	.	+	1	Parent=Os11t0207200-01
Chr11	irgsp1_rep	CDS	5463215	5463274	.	+	0	Parent=Os11t0207200-01
Chr11	irgsp1_rep	CDS	5463375	5463482	.	+	0	Parent=Os11t0207200-01
Chr11	irgsp1_rep	CDS	5463566	5463802	.	+	0	Parent=Os11t0207200-01
Chr11	irgsp1_rep	CDS	5464012	5464127	.	+	0	Parent=Os11t0207200-01
Chr11	irgsp1_rep	CDS	5464209	5464461	.	+	1	Parent=Os11t0207200-01
Chr11	irgsp1_rep	three_prime_UTR	5464462	5464646	.	+	.	Parent=Os11t0207200-01
Chr11	irgsp1_rep	mRNA	5465014	5466306	.	-	.	ID=Os11t0207300-00;Name=Os11t0207300-00;Locus_id=Os11g0207300;Note=Bacterial luciferase-like family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001067465.1 (RefSeq);TENOR=Os11t0207300-00;KEGG=Os11t0207300-00
Chr11	irgsp1_rep	CDS	5465014	5466306	.	-	0	Parent=Os11t0207300-00
Chr11	irgsp1_rep	mRNA	5467512	5469283	.	-	.	ID=Os11t0207400-01;Name=Os11t0207400-01;Locus_id=Os11g0207400;Note=NB-ARC domain containing protein.;Transcript_evidence=AK066082 (DDBJ%2C Best hit);ORF_evidence=A3C9K3 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);NIAS_FLcDNA=J013053H16;TENOR=Os11t0207400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	5469208	5469283	.	-	.	Parent=Os11t0207400-01
Chr11	irgsp1_rep	CDS	5468332	5469207	.	-	0	Parent=Os11t0207400-01
Chr11	irgsp1_rep	three_prime_UTR	5467512	5468331	.	-	.	Parent=Os11t0207400-01
Chr11	irgsp1_rep	mRNA	5479730	5482703	.	+	.	ID=Os11t0207600-00;Name=Os11t0207600-00;Locus_id=Os11g0207600;Oryzabase Gene Symbol Synonym(s)=OsMyb12;Oryzabase Gene Name Synonym(s)=myb transcription factor 12%2C transcription factor MYB12;Note=Myb-like protein.;Transcript_evidence=EU975939 (DDBJ);ORF_evidence=Q9LLM9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);Oryzabase=10249;TENOR=Os11t0207600-00;KEGG=Os11t0207600-00
Chr11	irgsp1_rep	five_prime_UTR	5479730	5479880	.	+	.	Parent=Os11t0207600-00
Chr11	irgsp1_rep	CDS	5479881	5480061	.	+	0	Parent=Os11t0207600-00
Chr11	irgsp1_rep	CDS	5482081	5482703	.	+	2	Parent=Os11t0207600-00
Chr11	irgsp1_rep	mRNA	5488731	5493004	.	-	.	ID=Os11t0207700-00;Name=Os11t0207700-00;Locus_id=Os11g0207700;CGSNL Gene Symbol=YUCCA13;CGSNL Gene Name=YUCCA-LIKE GENE 13;Oryzabase Gene Symbol Synonym(s)=OsYUCCA13%2C OsYUC13;Note=Similar to Flavin-binding monooxygenase-like family protein.;Transcript_evidence=tplb0009m23 (Wheat FLcDNA);ORF_evidence=Q2R929 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: flavin-containing monooxygenase activity (GO:0004499),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=Pyridine nucleotide-disulphide oxidoreductase%2C class-II (IPR000103),FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR013027),Flavin monooxygenase-like (IPR020946);Oryzabase=9111;TENOR=Os11t0207700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	5492384	5493004	.	-	0	Parent=Os11t0207700-00
Chr11	irgsp1_rep	CDS	5491840	5492079	.	-	0	Parent=Os11t0207700-00
Chr11	irgsp1_rep	CDS	5491605	5491727	.	-	0	Parent=Os11t0207700-00
Chr11	irgsp1_rep	CDS	5488767	5488946	.	-	0	Parent=Os11t0207700-00
Chr11	irgsp1_rep	three_prime_UTR	5488731	5488766	.	-	.	Parent=Os11t0207700-00
Chr11	irgsp1_rep	mRNA	5498727	5512216	.	-	.	ID=Os11t0207800-00;Name=Os11t0207800-00;Locus_id=Os11g0207800;Oryzabase Gene Symbol Synonym(s)=Os_F0690%2C Fbox-12-pseuso;Oryzabase Gene Name Synonym(s)=F-box family-12 pseudogene;Note=Conserved hypothetical protein.;Transcript_evidence=AK330829 (DDBJ);ORF_evidence=B8BJM1 (UniProt);Oryzabase=17557;TENOR=Os11t0207800-00
Chr11	irgsp1_rep	CDS	5511182	5512216	.	-	0	Parent=Os11t0207800-00
Chr11	irgsp1_rep	CDS	5499072	5499227	.	-	0	Parent=Os11t0207800-00
Chr11	irgsp1_rep	CDS	5498727	5498990	.	-	0	Parent=Os11t0207800-00
Chr11	irgsp1_rep	mRNA	5514544	5516300	.	+	.	ID=Os11t0207900-00;Name=Os11t0207900-00;Locus_id=Os11g0207900;CGSNL Gene Symbol=YUCCA14;CGSNL Gene Name=YUCCA-LIKE GENE 14;Oryzabase Gene Symbol Synonym(s)=OsYUCCA14%2C OsYUC14;Note=Similar to Flavin-binding monooxygenase-like family protein.;Transcript_evidence=tplb0009m23 (Wheat FLcDNA);ORF_evidence=Q2R929 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: flavin-containing monooxygenase activity (GO:0004499),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=Pyridine nucleotide-disulphide oxidoreductase%2C class-II (IPR000103),FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR013027),Flavin monooxygenase-like (IPR020946);Oryzabase=9112;TENOR=Os11t0207900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	5514544	5514583	.	+	.	Parent=Os11t0207900-00
Chr11	irgsp1_rep	CDS	5514584	5515204	.	+	0	Parent=Os11t0207900-00
Chr11	irgsp1_rep	CDS	5515504	5515743	.	+	0	Parent=Os11t0207900-00
Chr11	irgsp1_rep	CDS	5515857	5515979	.	+	0	Parent=Os11t0207900-00
Chr11	irgsp1_rep	CDS	5516121	5516300	.	+	0	Parent=Os11t0207900-00
Chr11	irgsp1_rep	mRNA	5518581	5520465	.	+	.	ID=Os11t0208000-01;Name=Os11t0208000-01;Locus_id=Os11g0208000;Oryzabase Gene Symbol Synonym(s)=OsFbox587%2C Os_F0097;Oryzabase Gene Name Synonym(s)=F-box protein 587;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK109818 (DDBJ%2C Best hit);ORF_evidence=A2ZCH2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-148-A03;Oryzabase=17354;Expression=AK109818;TENOR=Os11t0208000-01;KEGG=Os11t0208000-01
Chr11	irgsp1_rep	five_prime_UTR	5518581	5518687	.	+	.	Parent=Os11t0208000-01
Chr11	irgsp1_rep	CDS	5518688	5519548	.	+	0	Parent=Os11t0208000-01
Chr11	irgsp1_rep	CDS	5519956	5520111	.	+	0	Parent=Os11t0208000-01
Chr11	irgsp1_rep	CDS	5520179	5520439	.	+	0	Parent=Os11t0208000-01
Chr11	irgsp1_rep	three_prime_UTR	5520440	5520465	.	+	.	Parent=Os11t0208000-01
Chr11	irgsp1_rep	mRNA	5518609	5521928	.	+	.	ID=Os11t0208000-02;Name=Os11t0208000-02;Locus_id=Os11g0208000;Oryzabase Gene Symbol Synonym(s)=OsFbox587%2C Os_F0097;Oryzabase Gene Name Synonym(s)=F-box protein 587;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK119333 (DDBJ%2C Best hit);ORF_evidence=A2ZCH2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=001-131-B12;Oryzabase=17354;Expression=AK119333;TENOR=Os11t0208000-02;KEGG=Os11t0208000-02
Chr11	irgsp1_rep	five_prime_UTR	5518609	5518687	.	+	.	Parent=Os11t0208000-02
Chr11	irgsp1_rep	CDS	5518688	5519548	.	+	0	Parent=Os11t0208000-02
Chr11	irgsp1_rep	CDS	5519956	5520111	.	+	0	Parent=Os11t0208000-02
Chr11	irgsp1_rep	CDS	5520179	5520439	.	+	0	Parent=Os11t0208000-02
Chr11	irgsp1_rep	three_prime_UTR	5520440	5521928	.	+	.	Parent=Os11t0208000-02
Chr11	irgsp1_rep	mRNA	5530077	5534187	.	-	.	ID=Os11t0208100-01;Name=Os11t0208100-01;Locus_id=Os11g0208100;Oryzabase Gene Symbol Synonym(s)=OsFbox588%2C Os_F0365%2C Fbox-10;Oryzabase Gene Name Synonym(s)=F-box protein 588%2C F-box family-10;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK101566 (DDBJ%2C Best hit);ORF_evidence=B9V0Q5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033050F09;Oryzabase=17355;Expression=AK101566;TENOR=Os11t0208100-01;KEGG=Os11t0208100-01
Chr11	irgsp1_rep	five_prime_UTR	5534003	5534187	.	-	.	Parent=Os11t0208100-01
Chr11	irgsp1_rep	CDS	5533097	5534002	.	-	0	Parent=Os11t0208100-01
Chr11	irgsp1_rep	CDS	5532684	5532848	.	-	0	Parent=Os11t0208100-01
Chr11	irgsp1_rep	CDS	5532388	5532589	.	-	0	Parent=Os11t0208100-01
Chr11	irgsp1_rep	CDS	5531935	5531972	.	-	2	Parent=Os11t0208100-01
Chr11	irgsp1_rep	three_prime_UTR	5531933	5531934	.	-	.	Parent=Os11t0208100-01
Chr11	irgsp1_rep	three_prime_UTR	5530077	5530478	.	-	.	Parent=Os11t0208100-01
Chr11	irgsp1_rep	mRNA	5546196	5554530	.	-	.	ID=Os11t0208300-00;Name=Os11t0208300-00;Locus_id=Os11g0208300;Oryzabase Gene Symbol Synonym(s)=Fbox-9-pseudo%2C Os_F0394;Oryzabase Gene Name Synonym(s)=F-box family-9 pseudogene;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9V0Q4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17618;TENOR=Os11t0208300-00;KEGG=Os11t0208300-00
Chr11	irgsp1_rep	CDS	5553795	5554530	.	-	0	Parent=Os11t0208300-00
Chr11	irgsp1_rep	CDS	5553355	5553614	.	-	2	Parent=Os11t0208300-00
Chr11	irgsp1_rep	CDS	5546939	5547094	.	-	0	Parent=Os11t0208300-00
Chr11	irgsp1_rep	CDS	5546650	5546851	.	-	0	Parent=Os11t0208300-00
Chr11	irgsp1_rep	CDS	5546196	5546233	.	-	2	Parent=Os11t0208300-00
Chr11	irgsp1_rep	mRNA	5557380	5560163	.	-	.	ID=Os11t0208400-01;Name=Os11t0208400-01;Locus_id=Os11g0208400;Oryzabase Gene Symbol Synonym(s)=OsFbox589%2C Os_F0137%2C Fbox-8;Oryzabase Gene Name Synonym(s)=F-box protein 589%2C F-box family-8;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK067887 (DDBJ%2C Best hit);ORF_evidence=Q2R922 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013125D22;Oryzabase=17356;Expression=AK067887;TENOR=Os11t0208400-01;KEGG=Os11t0208400-01
Chr11	irgsp1_rep	five_prime_UTR	5559751	5560163	.	-	.	Parent=Os11t0208400-01
Chr11	irgsp1_rep	CDS	5558824	5559750	.	-	0	Parent=Os11t0208400-01
Chr11	irgsp1_rep	CDS	5558488	5558643	.	-	0	Parent=Os11t0208400-01
Chr11	irgsp1_rep	CDS	5558218	5558407	.	-	0	Parent=Os11t0208400-01
Chr11	irgsp1_rep	CDS	5557723	5557727	.	-	2	Parent=Os11t0208400-01
Chr11	irgsp1_rep	three_prime_UTR	5557380	5557722	.	-	.	Parent=Os11t0208400-01
Chr11	irgsp1_rep	mRNA	5558242	5560096	.	+	.	ID=Os11t0208500-00;Name=Os11t0208500-00;Locus_id=Os11g0208500;Note=Hypothetical protein.;Transcript_evidence=tplb0026g09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0208500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	5558242	5558397	.	+	.	Parent=Os11t0208500-00
Chr11	irgsp1_rep	five_prime_UTR	5558464	5558732	.	+	.	Parent=Os11t0208500-00
Chr11	irgsp1_rep	five_prime_UTR	5558907	5559325	.	+	.	Parent=Os11t0208500-00
Chr11	irgsp1_rep	CDS	5559326	5559949	.	+	0	Parent=Os11t0208500-00
Chr11	irgsp1_rep	three_prime_UTR	5559950	5560096	.	+	.	Parent=Os11t0208500-00
Chr11	irgsp1_rep	mRNA	5565444	5568307	.	-	.	ID=Os11t0208600-01;Name=Os11t0208600-01;Locus_id=Os11g0208600;Oryzabase Gene Symbol Synonym(s)=Os_F0761%2C Fbox-7;Oryzabase Gene Name Synonym(s)=F-box family-7;Note=Similar to F-box family-8.;Transcript_evidence=AK106458 (DDBJ%2C Best hit);ORF_evidence=B9V0Q2 (UniProt);NIAS_FLcDNA=002-103-G02;Oryzabase=17558;Expression=AK106458;TENOR=Os11t0208600-01;KEGG=Os11t0208600-01
Chr11	irgsp1_rep	five_prime_UTR	5568047	5568307	.	-	.	Parent=Os11t0208600-01
Chr11	irgsp1_rep	CDS	5567781	5568046	.	-	0	Parent=Os11t0208600-01
Chr11	irgsp1_rep	CDS	5566793	5566811	.	-	1	Parent=Os11t0208600-01
Chr11	irgsp1_rep	CDS	5566449	5566712	.	-	0	Parent=Os11t0208600-01
Chr11	irgsp1_rep	three_prime_UTR	5565444	5566448	.	-	.	Parent=Os11t0208600-01
Chr11	irgsp1_rep	mRNA	5569289	5571785	.	+	.	ID=Os11t0208651-00;Name=Os11t0208651-00;Locus_id=Os11g0208651;Note=Hypothetical protein.;Transcript_evidence=tplb0028c09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0208651-00
Chr11	irgsp1_rep	five_prime_UTR	5569289	5571308	.	+	.	Parent=Os11t0208651-00
Chr11	irgsp1_rep	CDS	5571309	5571764	.	+	0	Parent=Os11t0208651-00
Chr11	irgsp1_rep	three_prime_UTR	5571765	5571785	.	+	.	Parent=Os11t0208651-00
Chr11	irgsp1_rep	mRNA	5580098	5582565	.	-	.	ID=Os11t0208700-00;Name=Os11t0208700-00;Locus_id=Os11g0208700;Note=Similar to D-mannose binding lectin family protein.;Transcript_evidence=BT053773 (DDBJ);ORF_evidence=Q2R918 (UniProt);GO=Biological Process: recognition of pollen (GO:0048544),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441);TENOR=Os11t0208700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	5580850	5582565	.	-	0	Parent=Os11t0208700-00
Chr11	irgsp1_rep	three_prime_UTR	5580735	5580849	.	-	.	Parent=Os11t0208700-00
Chr11	irgsp1_rep	three_prime_UTR	5580098	5580665	.	-	.	Parent=Os11t0208700-00
Chr11	irgsp1_rep	mRNA	5580098	5582575	.	+	.	ID=Os11t0208750-00;Name=Os11t0208750-00;Locus_id=Os11g0208750;Note=Hypothetical protein.;Transcript_evidence=tplb0028c09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0208750-00
Chr11	irgsp1_rep	five_prime_UTR	5580098	5581408	.	+	.	Parent=Os11t0208750-00
Chr11	irgsp1_rep	CDS	5581409	5581660	.	+	0	Parent=Os11t0208750-00
Chr11	irgsp1_rep	three_prime_UTR	5581661	5582575	.	+	.	Parent=Os11t0208750-00
Chr11	irgsp1_rep	mRNA	5586534	5589198	.	-	.	ID=Os11t0208800-01;Name=Os11t0208800-01;Locus_id=Os11g0208800;Oryzabase Gene Name Synonym(s)=S-domain receptor-like protein kinase family-1%2C SR kinase;Note=Similar to Receptor-like protein kinase.;Transcript_evidence=AK102893 (DDBJ%2C Best hit);ORF_evidence=Q9LLN5 (UniProt);GO=Biological Process: recognition of pollen (GO:0048544),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),Protein kinase-like domain (IPR011009),PAN-2 domain (IPR013227),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J033112N10;Oryzabase=16211;TENOR=Os11t0208800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	5589097	5589198	.	-	.	Parent=Os11t0208800-01
Chr11	irgsp1_rep	CDS	5587393	5589096	.	-	0	Parent=Os11t0208800-01
Chr11	irgsp1_rep	CDS	5587053	5587100	.	-	0	Parent=Os11t0208800-01
Chr11	irgsp1_rep	three_prime_UTR	5586534	5587052	.	-	.	Parent=Os11t0208800-01
Chr11	irgsp1_rep	mRNA	5586618	5589099	.	+	.	ID=Os11t0208850-00;Name=Os11t0208850-00;Locus_id=Os11g0208850;Note=Hypothetical protein.;Transcript_evidence=tplb0028c09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0208850-00
Chr11	irgsp1_rep	five_prime_UTR	5586618	5588605	.	+	.	Parent=Os11t0208850-00
Chr11	irgsp1_rep	CDS	5588606	5588932	.	+	0	Parent=Os11t0208850-00
Chr11	irgsp1_rep	three_prime_UTR	5588933	5589099	.	+	.	Parent=Os11t0208850-00
Chr11	irgsp1_rep	mRNA	5592564	5603077	.	-	.	ID=Os11t0208900-01;Name=Os11t0208900-01;Locus_id=Os11g0208900;Note=Leucine rich repeat containing protein kinase.;Transcript_evidence=AK111797 (DDBJ%2C Best hit),AK100040 (DDBJ%2C Best hit);ORF_evidence=Q9LLN7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023102H15,J013151E16;Expression=AK111797;TENOR=Os11t0208900-01;KEGG=Os11t0208900-01
Chr11	irgsp1_rep	five_prime_UTR	5603026	5603077	.	-	.	Parent=Os11t0208900-01
Chr11	irgsp1_rep	CDS	5600163	5603025	.	-	0	Parent=Os11t0208900-01
Chr11	irgsp1_rep	CDS	5593224	5593585	.	-	2	Parent=Os11t0208900-01
Chr11	irgsp1_rep	three_prime_UTR	5592564	5593223	.	-	.	Parent=Os11t0208900-01
Chr11	irgsp1_rep	mRNA	5605253	5607081	.	+	.	ID=Os11t0209000-01;Name=Os11t0209000-01;Locus_id=Os11g0209000;Note=Glycine rich family protein.;Transcript_evidence=AK241407 (DDBJ%2C Best hit);ORF_evidence=NP_001067475.1 (RefSeq);InterPro=Glycine rich protein (IPR010800);NIAS_FLcDNA=J065159H18;TENOR=Os11t0209000-01;KEGG=Os11t0209000-01
Chr11	irgsp1_rep	five_prime_UTR	5605253	5605296	.	+	.	Parent=Os11t0209000-01
Chr11	irgsp1_rep	CDS	5605297	5605378	.	+	0	Parent=Os11t0209000-01
Chr11	irgsp1_rep	CDS	5606844	5606986	.	+	2	Parent=Os11t0209000-01
Chr11	irgsp1_rep	three_prime_UTR	5606987	5607081	.	+	.	Parent=Os11t0209000-01
Chr11	irgsp1_rep	mRNA	5609834	5610544	.	-	.	ID=Os11t0209050-00;Name=Os11t0209050-00;Locus_id=Os11g0209050;Note=Similar to nucleic acid binding protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001147048.1 (RefSeq);TENOR=Os11t0209050-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	5609834	5610544	.	-	0	Parent=Os11t0209050-00
Chr11	irgsp1_rep	mRNA	5611296	5615069	.	-	.	ID=Os11t0209100-01;Name=Os11t0209100-01;Locus_id=Os11g0209100;Oryzabase Gene Symbol Synonym(s)=OsFbox591%2C Os_F0435%2C Fbox-5;Oryzabase Gene Name Synonym(s)=F-box family-5%2C F-box protein 591;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK064391 (DDBJ%2C Best hit);ORF_evidence=B9V0N1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-108-F10;Oryzabase=16208;Expression=AK064391;TENOR=Os11t0209100-01;KEGG=Os11t0209100-01
Chr11	irgsp1_rep	five_prime_UTR	5614931	5615069	.	-	.	Parent=Os11t0209100-01
Chr11	irgsp1_rep	five_prime_UTR	5614731	5614785	.	-	.	Parent=Os11t0209100-01
Chr11	irgsp1_rep	CDS	5613819	5614730	.	-	0	Parent=Os11t0209100-01
Chr11	irgsp1_rep	CDS	5613457	5613618	.	-	0	Parent=Os11t0209100-01
Chr11	irgsp1_rep	CDS	5613189	5613348	.	-	0	Parent=Os11t0209100-01
Chr11	irgsp1_rep	CDS	5611608	5611624	.	-	2	Parent=Os11t0209100-01
Chr11	irgsp1_rep	three_prime_UTR	5611296	5611607	.	-	.	Parent=Os11t0209100-01
Chr11	irgsp1_rep	mRNA	5615461	5618397	.	-	.	ID=Os11t0209200-01;Name=Os11t0209200-01;Locus_id=Os11g0209200;Oryzabase Gene Symbol Synonym(s)=OsFbox592%2C Os_F0128%2C Fbox-4;Oryzabase Gene Name Synonym(s)=F-box protein 592%2C F-box family-4;Note=Similar to Ribosomal RNA apurinic site specific lyase.;Transcript_evidence=AK106902 (DDBJ%2C Best hit);ORF_evidence=B9V0K2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-118-H09;Oryzabase=16207;Expression=AK106902;TENOR=Os11t0209200-01;KEGG=Os11t0209200-01
Chr11	irgsp1_rep	five_prime_UTR	5618171	5618397	.	-	.	Parent=Os11t0209200-01
Chr11	irgsp1_rep	CDS	5617115	5618170	.	-	0	Parent=Os11t0209200-01
Chr11	irgsp1_rep	CDS	5616771	5616926	.	-	0	Parent=Os11t0209200-01
Chr11	irgsp1_rep	CDS	5616501	5616690	.	-	0	Parent=Os11t0209200-01
Chr11	irgsp1_rep	CDS	5615754	5615776	.	-	2	Parent=Os11t0209200-01
Chr11	irgsp1_rep	three_prime_UTR	5615461	5615753	.	-	.	Parent=Os11t0209200-01
Chr11	irgsp1_rep	mRNA	5616493	5618313	.	+	.	ID=Os11t0209300-00;Name=Os11t0209300-00;Locus_id=Os11g0209300;Note=Hypothetical protein.;Transcript_evidence=tplb0026g09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0209300-00
Chr11	irgsp1_rep	five_prime_UTR	5616493	5616753	.	+	.	Parent=Os11t0209300-00
Chr11	irgsp1_rep	five_prime_UTR	5616838	5617014	.	+	.	Parent=Os11t0209300-00
Chr11	irgsp1_rep	five_prime_UTR	5617172	5617673	.	+	.	Parent=Os11t0209300-00
Chr11	irgsp1_rep	CDS	5617674	5617747	.	+	0	Parent=Os11t0209300-00
Chr11	irgsp1_rep	CDS	5617895	5618313	.	+	1	Parent=Os11t0209300-00
Chr11	irgsp1_rep	mRNA	5627516	5628402	.	-	.	ID=Os11t0209400-01;Name=Os11t0209400-01;Locus_id=Os11g0209400;Oryzabase Gene Symbol Synonym(s)=OsFbox593%2C Os_F0278%2C Fbox-3;Oryzabase Gene Name Synonym(s)=F-box protein 593%2C F-box family-3;Note=Similar to F-box family-6.;Transcript_evidence=AK240883 (DDBJ%2C Best hit);ORF_evidence=B9V0N1 (UniProt);NIAS_FLcDNA=J065028B22;Oryzabase=17358;TENOR=Os11t0209400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	5628356	5628402	.	-	.	Parent=Os11t0209400-01
Chr11	irgsp1_rep	CDS	5628128	5628355	.	-	0	Parent=Os11t0209400-01
Chr11	irgsp1_rep	CDS	5627889	5628020	.	-	0	Parent=Os11t0209400-01
Chr11	irgsp1_rep	three_prime_UTR	5627516	5627888	.	-	.	Parent=Os11t0209400-01
Chr11	irgsp1_rep	mRNA	5627707	5629087	.	+	.	ID=Os11t0209450-00;Name=Os11t0209450-00;Locus_id=Os11g0209450;Note=Hypothetical protein.;Transcript_evidence=tplb0026g09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0209450-00
Chr11	irgsp1_rep	five_prime_UTR	5627707	5628083	.	+	.	Parent=Os11t0209450-00
Chr11	irgsp1_rep	five_prime_UTR	5628163	5628672	.	+	.	Parent=Os11t0209450-00
Chr11	irgsp1_rep	CDS	5628673	5629087	.	+	0	Parent=Os11t0209450-00
Chr11	irgsp1_rep	mRNA	5630932	5634827	.	-	.	ID=Os11t0209502-00;Name=Os11t0209502-00;Locus_id=Os11g0209502;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R907 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);TENOR=Os11t0209502-00
Chr11	irgsp1_rep	CDS	5633949	5634827	.	-	0	Parent=Os11t0209502-00
Chr11	irgsp1_rep	CDS	5633609	5633770	.	-	0	Parent=Os11t0209502-00
Chr11	irgsp1_rep	CDS	5630932	5631003	.	-	0	Parent=Os11t0209502-00
Chr11	irgsp1_rep	mRNA	5633618	5634870	.	+	.	ID=Os11t0209550-00;Name=Os11t0209550-00;Locus_id=Os11g0209550;Note=Hypothetical protein.;Transcript_evidence=tplb0026g09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0209550-00
Chr11	irgsp1_rep	five_prime_UTR	5633618	5633873	.	+	.	Parent=Os11t0209550-00
Chr11	irgsp1_rep	five_prime_UTR	5634003	5634596	.	+	.	Parent=Os11t0209550-00
Chr11	irgsp1_rep	CDS	5634597	5634870	.	+	0	Parent=Os11t0209550-00
Chr11	irgsp1_rep	mRNA	5645660	5648416	.	-	.	ID=Os11t0209600-01;Name=Os11t0209600-01;Locus_id=Os11g0209600;Oryzabase Gene Symbol Synonym(s)=OsFbox594%2C Os_F0295%2C Fbox-1;Oryzabase Gene Name Synonym(s)=F-box family-1%2C F-box protein 594;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK067328 (DDBJ%2C Best hit);ORF_evidence=B9V0M6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013104C16;Oryzabase=16203;Expression=AK067328;TENOR=Os11t0209600-01;KEGG=Os11t0209600-01
Chr11	irgsp1_rep	five_prime_UTR	5648399	5648416	.	-	.	Parent=Os11t0209600-01
Chr11	irgsp1_rep	CDS	5647411	5648398	.	-	0	Parent=Os11t0209600-01
Chr11	irgsp1_rep	CDS	5647297	5647301	.	-	2	Parent=Os11t0209600-01
Chr11	irgsp1_rep	three_prime_UTR	5647140	5647296	.	-	.	Parent=Os11t0209600-01
Chr11	irgsp1_rep	three_prime_UTR	5646876	5647032	.	-	.	Parent=Os11t0209600-01
Chr11	irgsp1_rep	three_prime_UTR	5645660	5646147	.	-	.	Parent=Os11t0209600-01
Chr11	irgsp1_rep	mRNA	5646834	5648372	.	-	.	ID=Os11t0209600-02;Name=Os11t0209600-02;Locus_id=Os11g0209600;Oryzabase Gene Symbol Synonym(s)=OsFbox594%2C Os_F0295%2C Fbox-1;Oryzabase Gene Name Synonym(s)=F-box family-1%2C F-box protein 594;Note=Similar to F-box family-1.;Transcript_evidence=AK070599 (DDBJ%2C Best hit);ORF_evidence=B9V0M6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023056D23;Oryzabase=16203;Expression=AK070599;TENOR=Os11t0209600-02;KEGG=Os11t0209600-02
Chr11	irgsp1_rep	five_prime_UTR	5648372	5648372	.	-	.	Parent=Os11t0209600-02
Chr11	irgsp1_rep	CDS	5647411	5648371	.	-	0	Parent=Os11t0209600-02
Chr11	irgsp1_rep	CDS	5647297	5647301	.	-	2	Parent=Os11t0209600-02
Chr11	irgsp1_rep	three_prime_UTR	5647140	5647296	.	-	.	Parent=Os11t0209600-02
Chr11	irgsp1_rep	three_prime_UTR	5646834	5647032	.	-	.	Parent=Os11t0209600-02
Chr11	irgsp1_rep	mRNA	5661839	5663574	.	-	.	ID=Os11t0209700-01;Name=Os11t0209700-01;Locus_id=Os11g0209700;Oryzabase Gene Symbol Synonym(s)=OsPI4K1%2C OsPI4K2;Oryzabase Gene Name Synonym(s)=phosphatidylinositol 4-kinase 1%2C phosphatidylinositol 4-kinase 2%2C alpha-type phosphatidylinositol 4-kinase%2C beta-type phosphatidylinositol 4-kinase%2C alpha-type PI4K%2C beta-type PI4K;Note=Hypothetical conserved gene.;Transcript_evidence=AK068331 (DDBJ%2C Best hit);ORF_evidence=Q9LLP5 (UniProt);GO=Molecular Function: inositol or phosphatidylinositol kinase activity (GO:0004428),Molecular Function: binding (GO:0005488);InterPro=Phosphoinositide 3-kinase%2C accessory (PIK) domain (IPR001263),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013145M04;Oryzabase=14676;TENOR=Os11t0209700-01
Chr11	irgsp1_rep	five_prime_UTR	5663136	5663574	.	-	.	Parent=Os11t0209700-01
Chr11	irgsp1_rep	CDS	5661839	5663135	.	-	0	Parent=Os11t0209700-01
Chr11	irgsp1_rep	mRNA	5656473	5661850	.	-	.	ID=Os11t0209700-02;Name=Os11t0209700-02;Locus_id=Os11g0209700;Oryzabase Gene Symbol Synonym(s)=OsPI4K1%2C OsPI4K2;Oryzabase Gene Name Synonym(s)=phosphatidylinositol 4-kinase 1%2C phosphatidylinositol 4-kinase 2%2C alpha-type phosphatidylinositol 4-kinase%2C beta-type phosphatidylinositol 4-kinase%2C alpha-type PI4K%2C beta-type PI4K;Note=Conserved hypothetical protein.;Transcript_evidence=AK073735 (DDBJ%2C Best hit);ORF_evidence=Q9LLP5 (UniProt);NIAS_FLcDNA=J033059H08;Oryzabase=14676;TENOR=Os11t0209700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	5661849	5661850	.	-	.	Parent=Os11t0209700-02
Chr11	irgsp1_rep	CDS	5661351	5661848	.	-	0	Parent=Os11t0209700-02
Chr11	irgsp1_rep	CDS	5660523	5660711	.	-	0	Parent=Os11t0209700-02
Chr11	irgsp1_rep	CDS	5660369	5660417	.	-	0	Parent=Os11t0209700-02
Chr11	irgsp1_rep	CDS	5659503	5659635	.	-	2	Parent=Os11t0209700-02
Chr11	irgsp1_rep	CDS	5658782	5659295	.	-	1	Parent=Os11t0209700-02
Chr11	irgsp1_rep	three_prime_UTR	5658466	5658781	.	-	.	Parent=Os11t0209700-02
Chr11	irgsp1_rep	three_prime_UTR	5658263	5658385	.	-	.	Parent=Os11t0209700-02
Chr11	irgsp1_rep	three_prime_UTR	5657479	5657548	.	-	.	Parent=Os11t0209700-02
Chr11	irgsp1_rep	three_prime_UTR	5656895	5656992	.	-	.	Parent=Os11t0209700-02
Chr11	irgsp1_rep	three_prime_UTR	5656696	5656800	.	-	.	Parent=Os11t0209700-02
Chr11	irgsp1_rep	three_prime_UTR	5656473	5656504	.	-	.	Parent=Os11t0209700-02
Chr11	irgsp1_rep	mRNA	5672940	5676655	.	-	.	ID=Os11t0209900-00;Name=Os11t0209900-00;Locus_id=Os11g0209900;Oryzabase Gene Symbol Synonym(s)=NifS;Note=Similar to NifS-like protein.;Transcript_evidence=AK367175 (DDBJ);ORF_evidence=B9V0T2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferase%2C class V/Cysteine desulfurase (IPR000192),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);Oryzabase=16202;TENOR=Os11t0209900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	5675742	5676655	.	-	0	Parent=Os11t0209900-00
Chr11	irgsp1_rep	CDS	5672940	5674005	.	-	1	Parent=Os11t0209900-00
Chr11	irgsp1_rep	mRNA	5680101	5684035	.	-	.	ID=Os11t0210000-01;Name=Os11t0210000-01;Locus_id=Os11g0210000;Note=Conserved hypothetical protein.;Transcript_evidence=AK071323 (DDBJ%2C Best hit);ORF_evidence=NP_001045408.2 (RefSeq);NIAS_FLcDNA=J023089I04;Expression=AK071323;TENOR=Os11t0210000-01;KEGG=Os11t0210000-01
Chr11	irgsp1_rep	five_prime_UTR	5683695	5684035	.	-	.	Parent=Os11t0210000-01
Chr11	irgsp1_rep	five_prime_UTR	5683475	5683602	.	-	.	Parent=Os11t0210000-01
Chr11	irgsp1_rep	five_prime_UTR	5682273	5682748	.	-	.	Parent=Os11t0210000-01
Chr11	irgsp1_rep	five_prime_UTR	5680749	5680880	.	-	.	Parent=Os11t0210000-01
Chr11	irgsp1_rep	CDS	5680437	5680748	.	-	0	Parent=Os11t0210000-01
Chr11	irgsp1_rep	three_prime_UTR	5680101	5680436	.	-	.	Parent=Os11t0210000-01
Chr11	irgsp1_rep	mRNA	5699982	5702081	.	-	.	ID=Os11t0210100-01;Name=Os11t0210100-01;Locus_id=Os11g0210100;Oryzabase Gene Symbol Synonym(s)=prx132%2C prx133;Oryzabase Gene Name Synonym(s)=class III peroxidase 132%2C class III peroxidase 133;Note=Similar to Class III peroxidase 133.;Transcript_evidence=AK240865 (DDBJ%2C Best hit);ORF_evidence=Q5U1G0 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793);NIAS_FLcDNA=J065023N07;Oryzabase=14648;TENOR=Os11t0210100-01;KEGG=Os11t0210100-01
Chr11	irgsp1_rep	five_prime_UTR	5701985	5702081	.	-	.	Parent=Os11t0210100-01
Chr11	irgsp1_rep	CDS	5701757	5701984	.	-	0	Parent=Os11t0210100-01
Chr11	irgsp1_rep	CDS	5701454	5701639	.	-	0	Parent=Os11t0210100-01
Chr11	irgsp1_rep	CDS	5701091	5701253	.	-	0	Parent=Os11t0210100-01
Chr11	irgsp1_rep	CDS	5700547	5700974	.	-	2	Parent=Os11t0210100-01
Chr11	irgsp1_rep	three_prime_UTR	5699982	5700546	.	-	.	Parent=Os11t0210100-01
Chr11	irgsp1_rep	mRNA	5710677	5711244	.	-	.	ID=Os11t0210201-00;Name=Os11t0210201-00;Locus_id=Os11g0210201;Oryzabase Gene Symbol Synonym(s)=RZ53;Note=Conserved hypothetical protein.;Transcript_evidence=CU406078 (DDBJ%2C Best hit);ORF_evidence=NP_001176428.1 (RefSeq);Oryzabase=16201;TENOR=Os11t0210201-00;KEGG=Os11t0210201-00
Chr11	irgsp1_rep	five_prime_UTR	5711159	5711244	.	-	.	Parent=Os11t0210201-00
Chr11	irgsp1_rep	CDS	5710853	5711158	.	-	0	Parent=Os11t0210201-00
Chr11	irgsp1_rep	three_prime_UTR	5710677	5710852	.	-	.	Parent=Os11t0210201-00
Chr11	irgsp1_rep	mRNA	5712671	5716288	.	-	.	ID=Os11t0210300-01;Name=Os11t0210300-01;Locus_id=Os11g0210300;CGSNL Gene Symbol=ADH1;CGSNL Gene Name=ALCOHOL DEHYDROGENASE 1;Oryzabase Gene Symbol Synonym(s)=Adh1%2C Adh1/2%2C adh1/adh2%2C OsADH1;Oryzabase Gene Name Synonym(s)=Alcohol dehydrogenase1%2C Alcohol dehydrogenase 1%2C Alcohol dehydrogenase-1%2C reduced adh activity%2C Alcohol dehydrogenase I;Note=Alcohol dehydrogenase 1.;Transcript_evidence=AK069330 (DDBJ%2C Best hit);ORF_evidence=Q760C7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),Alcohol dehydrogenase%2C zinc-type%2C conserved site (IPR002328),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023014M06;Oryzabase=927;Expression=AK069330;TENOR=Os11t0210300-01;KEGG=Os11t0210300-01 (EC:1.1.1.1%2C EC:1.1.1.284)
Chr11	irgsp1_rep	five_prime_UTR	5715917	5716288	.	-	.	Parent=Os11t0210300-01
Chr11	irgsp1_rep	CDS	5715883	5715916	.	-	0	Parent=Os11t0210300-01
Chr11	irgsp1_rep	CDS	5715487	5715623	.	-	2	Parent=Os11t0210300-01
Chr11	irgsp1_rep	CDS	5715343	5715389	.	-	0	Parent=Os11t0210300-01
Chr11	irgsp1_rep	CDS	5714188	5714513	.	-	1	Parent=Os11t0210300-01
Chr11	irgsp1_rep	CDS	5714020	5714102	.	-	2	Parent=Os11t0210300-01
Chr11	irgsp1_rep	CDS	5713865	5713940	.	-	0	Parent=Os11t0210300-01
Chr11	irgsp1_rep	CDS	5713722	5713783	.	-	2	Parent=Os11t0210300-01
Chr11	irgsp1_rep	CDS	5713546	5713641	.	-	0	Parent=Os11t0210300-01
Chr11	irgsp1_rep	CDS	5713302	5713463	.	-	0	Parent=Os11t0210300-01
Chr11	irgsp1_rep	CDS	5713026	5713142	.	-	0	Parent=Os11t0210300-01
Chr11	irgsp1_rep	three_prime_UTR	5712671	5713025	.	-	.	Parent=Os11t0210300-01
Chr11	irgsp1_rep	mRNA	5712810	5716030	.	-	.	ID=Os11t0210300-02;Name=Os11t0210300-02;Locus_id=Os11g0210300;CGSNL Gene Symbol=ADH1;CGSNL Gene Name=ALCOHOL DEHYDROGENASE 1;Oryzabase Gene Symbol Synonym(s)=Adh1%2C Adh1/2%2C adh1/adh2%2C OsADH1;Oryzabase Gene Name Synonym(s)=Alcohol dehydrogenase1%2C Alcohol dehydrogenase 1%2C Alcohol dehydrogenase-1%2C reduced adh activity%2C Alcohol dehydrogenase I;Note=Similar to Alcohol dehydrogenase 1.;Transcript_evidence=AK061267 (DDBJ%2C Best hit);ORF_evidence=Q760C7 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),GroES-like (IPR011032),Alcohol dehydrogenase GroES-like (IPR013154);NIAS_FLcDNA=006-212-C12;Oryzabase=927;Expression=AK061267;TENOR=Os11t0210300-02;KEGG=Os11t0210300-02 (EC:1.1.1.1%2C EC:1.1.1.284)
Chr11	irgsp1_rep	five_prime_UTR	5715917	5716030	.	-	.	Parent=Os11t0210300-02
Chr11	irgsp1_rep	CDS	5715883	5715916	.	-	0	Parent=Os11t0210300-02
Chr11	irgsp1_rep	CDS	5715487	5715623	.	-	2	Parent=Os11t0210300-02
Chr11	irgsp1_rep	CDS	5715343	5715389	.	-	0	Parent=Os11t0210300-02
Chr11	irgsp1_rep	CDS	5714491	5714513	.	-	1	Parent=Os11t0210300-02
Chr11	irgsp1_rep	CDS	5714391	5714428	.	-	2	Parent=Os11t0210300-02
Chr11	irgsp1_rep	three_prime_UTR	5714188	5714390	.	-	.	Parent=Os11t0210300-02
Chr11	irgsp1_rep	three_prime_UTR	5714020	5714102	.	-	.	Parent=Os11t0210300-02
Chr11	irgsp1_rep	three_prime_UTR	5713865	5713940	.	-	.	Parent=Os11t0210300-02
Chr11	irgsp1_rep	three_prime_UTR	5713722	5713783	.	-	.	Parent=Os11t0210300-02
Chr11	irgsp1_rep	three_prime_UTR	5713546	5713641	.	-	.	Parent=Os11t0210300-02
Chr11	irgsp1_rep	three_prime_UTR	5713302	5713463	.	-	.	Parent=Os11t0210300-02
Chr11	irgsp1_rep	three_prime_UTR	5712810	5713142	.	-	.	Parent=Os11t0210300-02
Chr11	irgsp1_rep	mRNA	5745005	5748092	.	-	.	ID=Os11t0210500-01;Name=Os11t0210500-01;Locus_id=Os11g0210500;CGSNL Gene Symbol=ADH2;CGSNL Gene Name=ALCOHOL DEHYDROGENASE 2;Oryzabase Gene Symbol Synonym(s)=Adh2*%2C Adh2;Oryzabase Gene Name Synonym(s)=Alcohol dehydrogenase2%2C Alcohol dehydrogenase 2%2C Alcohol dehydrogenase-2;Note=Similar to Alcohol dehydrogenase.;Transcript_evidence=AK102799 (DDBJ%2C Best hit);ORF_evidence=Q4R1G9 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),Alcohol dehydrogenase%2C zinc-type%2C conserved site (IPR002328),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033108E05;Oryzabase=840;Expression=AK102799;TENOR=Os11t0210500-01;KEGG=Os11t0210500-01 (EC:1.1.1.1%2C EC:1.1.1.284)
Chr11	irgsp1_rep	five_prime_UTR	5747988	5748092	.	-	.	Parent=Os11t0210500-01
Chr11	irgsp1_rep	CDS	5747954	5747987	.	-	0	Parent=Os11t0210500-01
Chr11	irgsp1_rep	CDS	5747719	5747855	.	-	2	Parent=Os11t0210500-01
Chr11	irgsp1_rep	CDS	5747560	5747606	.	-	0	Parent=Os11t0210500-01
Chr11	irgsp1_rep	CDS	5746626	5746951	.	-	1	Parent=Os11t0210500-01
Chr11	irgsp1_rep	CDS	5746431	5746513	.	-	2	Parent=Os11t0210500-01
Chr11	irgsp1_rep	CDS	5746253	5746328	.	-	0	Parent=Os11t0210500-01
Chr11	irgsp1_rep	CDS	5746097	5746158	.	-	2	Parent=Os11t0210500-01
Chr11	irgsp1_rep	CDS	5745903	5745998	.	-	0	Parent=Os11t0210500-01
Chr11	irgsp1_rep	CDS	5745611	5745772	.	-	0	Parent=Os11t0210500-01
Chr11	irgsp1_rep	CDS	5745358	5745474	.	-	0	Parent=Os11t0210500-01
Chr11	irgsp1_rep	three_prime_UTR	5745005	5745357	.	-	.	Parent=Os11t0210500-01
Chr11	irgsp1_rep	mRNA	5745074	5746657	.	-	.	ID=Os11t0210500-02;Name=Os11t0210500-02;Locus_id=Os11g0210500;CGSNL Gene Symbol=ADH2;CGSNL Gene Name=ALCOHOL DEHYDROGENASE 2;Oryzabase Gene Symbol Synonym(s)=Adh2*%2C Adh2;Oryzabase Gene Name Synonym(s)=Alcohol dehydrogenase2%2C Alcohol dehydrogenase 2%2C Alcohol dehydrogenase-2;Note=Similar to Alcohol dehydrogenase.;Transcript_evidence=AK070886 (DDBJ%2C Best hit);ORF_evidence=Q4R1G9 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023069O03;Oryzabase=840;Expression=AK070886;TENOR=Os11t0210500-02;KEGG=Os11t0210500-02 (EC:1.1.1.1%2C EC:1.1.1.284)
Chr11	irgsp1_rep	five_prime_UTR	5746657	5746657	.	-	.	Parent=Os11t0210500-02
Chr11	irgsp1_rep	CDS	5746626	5746656	.	-	0	Parent=Os11t0210500-02
Chr11	irgsp1_rep	CDS	5746431	5746513	.	-	2	Parent=Os11t0210500-02
Chr11	irgsp1_rep	CDS	5746253	5746328	.	-	0	Parent=Os11t0210500-02
Chr11	irgsp1_rep	CDS	5746097	5746158	.	-	2	Parent=Os11t0210500-02
Chr11	irgsp1_rep	CDS	5745903	5745998	.	-	0	Parent=Os11t0210500-02
Chr11	irgsp1_rep	CDS	5745611	5745772	.	-	0	Parent=Os11t0210500-02
Chr11	irgsp1_rep	CDS	5745358	5745474	.	-	0	Parent=Os11t0210500-02
Chr11	irgsp1_rep	three_prime_UTR	5745074	5745357	.	-	.	Parent=Os11t0210500-02
Chr11	irgsp1_rep	mRNA	5755644	5758642	.	-	.	ID=Os11t0210600-01;Name=Os11t0210600-01;Locus_id=Os11g0210600;Oryzabase Gene Symbol Synonym(s)=Adh3;Oryzabase Gene Name Synonym(s)=Alcohol dehydrogenase 3%2C alcohol dehydrogenase-3;Note=Similar to Alcohol dehydrogenase (Fragment).;Transcript_evidence=AK101288 (DDBJ%2C Best hit);ORF_evidence=A2ZCK1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033033F16;Oryzabase=16200;Expression=AK101288;TENOR=Os11t0210600-01;KEGG=Os11t0210600-01 (EC:1.1.1.1%2C EC:1.1.1.284)
Chr11	irgsp1_rep	five_prime_UTR	5758642	5758642	.	-	.	Parent=Os11t0210600-01
Chr11	irgsp1_rep	CDS	5758344	5758641	.	-	0	Parent=Os11t0210600-01
Chr11	irgsp1_rep	CDS	5757666	5757748	.	-	2	Parent=Os11t0210600-01
Chr11	irgsp1_rep	CDS	5757467	5757542	.	-	0	Parent=Os11t0210600-01
Chr11	irgsp1_rep	CDS	5757164	5757225	.	-	2	Parent=Os11t0210600-01
Chr11	irgsp1_rep	CDS	5756570	5756665	.	-	0	Parent=Os11t0210600-01
Chr11	irgsp1_rep	CDS	5756294	5756455	.	-	0	Parent=Os11t0210600-01
Chr11	irgsp1_rep	CDS	5756046	5756162	.	-	0	Parent=Os11t0210600-01
Chr11	irgsp1_rep	three_prime_UTR	5755644	5756045	.	-	.	Parent=Os11t0210600-01
Chr11	irgsp1_rep	mRNA	5762548	5766184	.	+	.	ID=Os11t0210700-00;Name=Os11t0210700-00;Locus_id=Os11g0210700;Note=Hypothetical gene.;Transcript_evidence=AK103331 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;Expression=AK103331;TENOR=Os11t0210700-00;KEGG=Os11t0210700-00
Chr11	irgsp1_rep	five_prime_UTR	5762548	5762603	.	+	.	Parent=Os11t0210700-00
Chr11	irgsp1_rep	CDS	5762604	5762975	.	+	0	Parent=Os11t0210700-00
Chr11	irgsp1_rep	three_prime_UTR	5762976	5763468	.	+	.	Parent=Os11t0210700-00
Chr11	irgsp1_rep	three_prime_UTR	5763644	5764154	.	+	.	Parent=Os11t0210700-00
Chr11	irgsp1_rep	three_prime_UTR	5764168	5764483	.	+	.	Parent=Os11t0210700-00
Chr11	irgsp1_rep	three_prime_UTR	5765427	5765822	.	+	.	Parent=Os11t0210700-00
Chr11	irgsp1_rep	three_prime_UTR	5765840	5766184	.	+	.	Parent=Os11t0210700-00
Chr11	irgsp1_rep	mRNA	5773790	5777594	.	+	.	ID=Os11t0211200-01;Name=Os11t0211200-01;Locus_id=Os11g0211200;Note=Similar to Tubulin-specific chaperon-like protein.;Transcript_evidence=AK242561 (DDBJ%2C Best hit);ORF_evidence=B9V0L8 (UniProt);NIAS_FLcDNA=J090003K01;TENOR=Os11t0211200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	5773790	5774048	.	+	.	Parent=Os11t0211200-01
Chr11	irgsp1_rep	CDS	5774049	5774108	.	+	0	Parent=Os11t0211200-01
Chr11	irgsp1_rep	CDS	5775715	5775738	.	+	0	Parent=Os11t0211200-01
Chr11	irgsp1_rep	three_prime_UTR	5775739	5775844	.	+	.	Parent=Os11t0211200-01
Chr11	irgsp1_rep	three_prime_UTR	5777239	5777594	.	+	.	Parent=Os11t0211200-01
Chr11	irgsp1_rep	mRNA	5777015	5787839	.	-	.	ID=Os11t0211300-01;Name=Os11t0211300-01;Locus_id=Os11g0211300;Note=Similar to NBS-LRR disease resistance protein homologue (Fragment).;Transcript_evidence=AK065649 (DDBJ%2C Best hit);ORF_evidence=E0CWC7 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: protein binding (GO:0005515),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),Leucine-rich repeat (IPR001611),NB-ARC (IPR002182);NIAS_FLcDNA=J013036J01;Expression=AK065649;TENOR=Os11t0211300-01;KEGG=Os11t0211300-01
Chr11	irgsp1_rep	five_prime_UTR	5787795	5787839	.	-	.	Parent=Os11t0211300-01
Chr11	irgsp1_rep	CDS	5787498	5787794	.	-	0	Parent=Os11t0211300-01
Chr11	irgsp1_rep	CDS	5782852	5783988	.	-	0	Parent=Os11t0211300-01
Chr11	irgsp1_rep	CDS	5778017	5780494	.	-	0	Parent=Os11t0211300-01
Chr11	irgsp1_rep	CDS	5777640	5777651	.	-	0	Parent=Os11t0211300-01
Chr11	irgsp1_rep	three_prime_UTR	5777539	5777639	.	-	.	Parent=Os11t0211300-01
Chr11	irgsp1_rep	three_prime_UTR	5777015	5777426	.	-	.	Parent=Os11t0211300-01
Chr11	irgsp1_rep	mRNA	5778561	5779816	.	+	.	ID=Os11t0211400-01;Name=Os11t0211400-01;Locus_id=Os11g0211400;Note=Hypothetical protein.;Transcript_evidence=AK059126 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-022-F12;Expression=AK059126;TENOR=Os11t0211400-01;KEGG=Os11t0211400-01
Chr11	irgsp1_rep	five_prime_UTR	5778561	5778668	.	+	.	Parent=Os11t0211400-01
Chr11	irgsp1_rep	CDS	5778669	5779013	.	+	0	Parent=Os11t0211400-01
Chr11	irgsp1_rep	three_prime_UTR	5779014	5779816	.	+	.	Parent=Os11t0211400-01
Chr11	irgsp1_rep	mRNA	5778708	5780520	.	+	.	ID=Os11t0211400-02;Name=Os11t0211400-02;Locus_id=Os11g0211400;Note=Non-protein coding transcript.;Transcript_evidence=AK072173 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013134P13;TENOR=Os11t0211400-02
Chr11	irgsp1_rep	exon	5778708	5780520	.	+	.	Parent=Os11t0211400-02
Chr11	irgsp1_rep	mRNA	5798254	5799120	.	-	.	ID=Os11t0211600-00;Name=Os11t0211600-00;Locus_id=Os11g0211600;Note=Similar to Leucine Rich Repeat family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R8Y6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);TENOR=Os11t0211600-00
Chr11	irgsp1_rep	CDS	5798254	5799120	.	-	0	Parent=Os11t0211600-00
Chr11	irgsp1_rep	mRNA	5799558	5802020	.	-	.	ID=Os11t0211650-00;Name=Os11t0211650-00;Locus_id=Os11g0211650;Note=Similar to Leucine Rich Repeat family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R8Y6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);TENOR=Os11t0211650-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	5801681	5802020	.	-	0	Parent=Os11t0211650-00
Chr11	irgsp1_rep	CDS	5800281	5800432	.	-	2	Parent=Os11t0211650-00
Chr11	irgsp1_rep	CDS	5799558	5800163	.	-	0	Parent=Os11t0211650-00
Chr11	irgsp1_rep	mRNA	5806736	5807957	.	+	.	ID=Os11t0211700-00;Name=Os11t0211700-00;Locus_id=Os11g0211700;Note=Hypothetical conserved gene.;Transcript_evidence=EU958004 (DDBJ);ORF_evidence=NP_001176429.1 (RefSeq);TENOR=Os11t0211700-00;KEGG=Os11t0211700-00
Chr11	irgsp1_rep	CDS	5806736	5806882	.	+	0	Parent=Os11t0211700-00
Chr11	irgsp1_rep	CDS	5807498	5807701	.	+	0	Parent=Os11t0211700-00
Chr11	irgsp1_rep	three_prime_UTR	5807702	5807957	.	+	.	Parent=Os11t0211700-00
Chr11	irgsp1_rep	mRNA	5808714	5809427	.	+	.	ID=Os11t0211800-01;Name=Os11t0211800-01;Locus_id=Os11g0211800;RAP-DB Gene Symbol Synonym(s)=OsDT11;RAP-DB Gene Name Synonym(s)=drought tolerance 11;CGSNL Gene Symbol=DT11;CGSNL Gene Name=DROUGHT TOLERANCE 11;Oryzabase Gene Symbol Synonym(s)=OsDT11;Oryzabase Gene Name Synonym(s)=drought tolerance 11;Note=Cysteine-rich peptide%2C Short-chain peptide%2C ABA-dependent drought tolerance;Transcript_evidence=AK059202;ORF_evidence=Q2R8Y4;InterPro=Domain of unknown function DUF5637 (IPR041434);NIAS_FLcDNA=001-024-A10;Manual Curation=March 4%2C 2020;Literature_PMID=27718117;Oryzabase=21537;TENOR=Os11t0211800-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=cell wall (GO:0005618)
Chr11	irgsp1_rep	five_prime_UTR	5808714	5808750	.	+	.	Parent=Os11t0211800-01
Chr11	irgsp1_rep	CDS	5808751	5809017	.	+	0	Parent=Os11t0211800-01
Chr11	irgsp1_rep	three_prime_UTR	5809018	5809427	.	+	.	Parent=Os11t0211800-01
Chr11	irgsp1_rep	mRNA	5820879	5826729	.	-	.	ID=Os11t0212000-00;Name=Os11t0212000-00;Locus_id=Os11g0212000;Note=Similar to Leucine Rich Repeat family protein%2C expressed.;Transcript_evidence=GU593052 (DDBJ);ORF_evidence=Q2R8Y2 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: protein binding (GO:0005515),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),Leucine-rich repeat (IPR001611),NB-ARC (IPR002182);TENOR=Os11t0212000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	5825653	5826729	.	-	0	Parent=Os11t0212000-00
Chr11	irgsp1_rep	CDS	5823007	5823615	.	-	0	Parent=Os11t0212000-00
Chr11	irgsp1_rep	CDS	5821290	5822632	.	-	0	Parent=Os11t0212000-00
Chr11	irgsp1_rep	CDS	5820908	5821142	.	-	1	Parent=Os11t0212000-00
Chr11	irgsp1_rep	three_prime_UTR	5820879	5820907	.	-	.	Parent=Os11t0212000-00
Chr11	irgsp1_rep	mRNA	5828346	5828666	.	-	.	ID=Os11t0212100-00;Name=Os11t0212100-00;Locus_id=Os11g0212100;Note=Similar to NBS-LRR disease resistance protein family-4.;Transcript_evidence=ab initio prediction;ORF_evidence=B9V0H6 (UniProt);TENOR=Os11t0212100-00
Chr11	irgsp1_rep	CDS	5828346	5828666	.	-	0	Parent=Os11t0212100-00
Chr11	irgsp1_rep	mRNA	5839249	5840796	.	-	.	ID=Os11t0212300-00;Name=Os11t0212300-00;Locus_id=Os11g0212300;CGSNL Gene Symbol=RLCK316;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 316;Oryzabase Gene Symbol Synonym(s)=OsWD40-186%2C OsRLCK316;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 316;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=AK333760 (DDBJ);ORF_evidence=Q2R8X9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=10867;TENOR=Os11t0212300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	5840779	5840796	.	-	.	Parent=Os11t0212300-00
Chr11	irgsp1_rep	CDS	5840677	5840778	.	-	0	Parent=Os11t0212300-00
Chr11	irgsp1_rep	CDS	5840140	5840401	.	-	0	Parent=Os11t0212300-00
Chr11	irgsp1_rep	CDS	5839797	5840025	.	-	2	Parent=Os11t0212300-00
Chr11	irgsp1_rep	CDS	5839575	5839725	.	-	1	Parent=Os11t0212300-00
Chr11	irgsp1_rep	CDS	5839249	5839470	.	-	0	Parent=Os11t0212300-00
Chr11	irgsp1_rep	mRNA	5852691	5853472	.	-	.	ID=Os11t0212801-00;Name=Os11t0212801-00;Locus_id=Os11g0212801;Note=Conserved hypothetical protein.;Transcript_evidence=BT039039 (DDBJ);ORF_evidence=Q2R8X6 (UniProt);TENOR=Os11t0212801-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	5853242	5853472	.	-	0	Parent=Os11t0212801-00
Chr11	irgsp1_rep	CDS	5852976	5853122	.	-	0	Parent=Os11t0212801-00
Chr11	irgsp1_rep	CDS	5852756	5852860	.	-	0	Parent=Os11t0212801-00
Chr11	irgsp1_rep	three_prime_UTR	5852691	5852755	.	-	.	Parent=Os11t0212801-00
Chr11	irgsp1_rep	mRNA	5859750	5868313	.	-	.	ID=Os11t0212900-01;Name=Os11t0212900-01;Locus_id=Os11g0212900;Oryzabase Gene Symbol Synonym(s)=OsWD40-187;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK111542 (DDBJ%2C Best hit);ORF_evidence=Q2R8X2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013037N20;Oryzabase=10868;Expression=AK111542;TENOR=Os11t0212900-01;KEGG=Os11t0212900-01
Chr11	irgsp1_rep	five_prime_UTR	5868107	5868313	.	-	.	Parent=Os11t0212900-01
Chr11	irgsp1_rep	five_prime_UTR	5867297	5867414	.	-	.	Parent=Os11t0212900-01
Chr11	irgsp1_rep	CDS	5867260	5867296	.	-	0	Parent=Os11t0212900-01
Chr11	irgsp1_rep	CDS	5866728	5866985	.	-	2	Parent=Os11t0212900-01
Chr11	irgsp1_rep	CDS	5865963	5866191	.	-	2	Parent=Os11t0212900-01
Chr11	irgsp1_rep	CDS	5865672	5865867	.	-	1	Parent=Os11t0212900-01
Chr11	irgsp1_rep	three_prime_UTR	5865328	5865671	.	-	.	Parent=Os11t0212900-01
Chr11	irgsp1_rep	three_prime_UTR	5864569	5864742	.	-	.	Parent=Os11t0212900-01
Chr11	irgsp1_rep	three_prime_UTR	5864391	5864446	.	-	.	Parent=Os11t0212900-01
Chr11	irgsp1_rep	three_prime_UTR	5863773	5863827	.	-	.	Parent=Os11t0212900-01
Chr11	irgsp1_rep	three_prime_UTR	5861578	5861617	.	-	.	Parent=Os11t0212900-01
Chr11	irgsp1_rep	three_prime_UTR	5861162	5861490	.	-	.	Parent=Os11t0212900-01
Chr11	irgsp1_rep	three_prime_UTR	5860938	5861069	.	-	.	Parent=Os11t0212900-01
Chr11	irgsp1_rep	three_prime_UTR	5860697	5860845	.	-	.	Parent=Os11t0212900-01
Chr11	irgsp1_rep	three_prime_UTR	5860511	5860579	.	-	.	Parent=Os11t0212900-01
Chr11	irgsp1_rep	three_prime_UTR	5859750	5860096	.	-	.	Parent=Os11t0212900-01
Chr11	irgsp1_rep	mRNA	5873537	5881813	.	-	.	ID=Os11t0213000-01;Name=Os11t0213000-01;Locus_id=Os11g0213000;CGSNL Gene Symbol=RLCK318;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 318;Oryzabase Gene Symbol Synonym(s)=OsWD40-188%2C OsRLCK318;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 318;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=AK241128 (DDBJ%2C Best hit);ORF_evidence=B9V0H3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J065096M08;Oryzabase=10869;TENOR=Os11t0213000-01;KEGG=Os11t0213000-01
Chr11	irgsp1_rep	five_prime_UTR	5881732	5881813	.	-	.	Parent=Os11t0213000-01
Chr11	irgsp1_rep	five_prime_UTR	5880714	5880752	.	-	.	Parent=Os11t0213000-01
Chr11	irgsp1_rep	CDS	5880612	5880713	.	-	0	Parent=Os11t0213000-01
Chr11	irgsp1_rep	CDS	5880096	5880351	.	-	0	Parent=Os11t0213000-01
Chr11	irgsp1_rep	CDS	5879334	5879562	.	-	2	Parent=Os11t0213000-01
Chr11	irgsp1_rep	CDS	5879049	5879238	.	-	1	Parent=Os11t0213000-01
Chr11	irgsp1_rep	three_prime_UTR	5878731	5879048	.	-	.	Parent=Os11t0213000-01
Chr11	irgsp1_rep	three_prime_UTR	5877681	5877848	.	-	.	Parent=Os11t0213000-01
Chr11	irgsp1_rep	three_prime_UTR	5877504	5877559	.	-	.	Parent=Os11t0213000-01
Chr11	irgsp1_rep	three_prime_UTR	5876945	5876999	.	-	.	Parent=Os11t0213000-01
Chr11	irgsp1_rep	three_prime_UTR	5875366	5875405	.	-	.	Parent=Os11t0213000-01
Chr11	irgsp1_rep	three_prime_UTR	5874947	5875269	.	-	.	Parent=Os11t0213000-01
Chr11	irgsp1_rep	three_prime_UTR	5874694	5874825	.	-	.	Parent=Os11t0213000-01
Chr11	irgsp1_rep	three_prime_UTR	5874451	5874599	.	-	.	Parent=Os11t0213000-01
Chr11	irgsp1_rep	three_prime_UTR	5874269	5874337	.	-	.	Parent=Os11t0213000-01
Chr11	irgsp1_rep	three_prime_UTR	5873537	5873870	.	-	.	Parent=Os11t0213000-01
Chr11	irgsp1_rep	mRNA	5891284	5891813	.	-	.	ID=Os11t0213400-00;Name=Os11t0213400-00;Locus_id=Os11g0213400;Note=Non-protein coding transcript.;Transcript_evidence=AM939974 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0213400-00
Chr11	irgsp1_rep	exon	5891284	5891813	.	-	.	Parent=Os11t0213400-00
Chr11	irgsp1_rep	mRNA	5895364	5897167	.	+	.	ID=Os11t0213500-01;Name=Os11t0213500-01;Locus_id=Os11g0213500;RAP-DB Gene Symbol Synonym(s)=SMK1%2C Os_Smk1%2COs_SMK1;RAP-DB Gene Name Synonym(s)=SMALL KERNEL 1%2C Small kernel 1;CGSNL Gene Symbol=SMK1;CGSNL Gene Name=SMALL KERNEL 1;Oryzabase Gene Symbol Synonym(s)=Os_SMK1;Oryzabase Gene Name Synonym(s)=Small kernel 1;Note=Pentatricopeptide repeat protein%2C Mitochondrial nad7 transcript editing%2C Seed development;Transcript_evidence=KF577931;ORF_evidence=Q2R8W9;InterPro=Pentatricopeptide repeat (IPR002885);Manual Curation=January 19%2C 2015;Literature_PMID=24923534;Oryzabase=19649;TENOR=Os11t0213500-00
Chr11	irgsp1_rep	CDS	5895364	5896776	.	+	0	Parent=Os11t0213500-01
Chr11	irgsp1_rep	three_prime_UTR	5896777	5897167	.	+	.	Parent=Os11t0213500-01
Chr11	irgsp1_rep	mRNA	5898818	5902693	.	-	.	ID=Os11t0213600-01;Name=Os11t0213600-01;Locus_id=Os11g0213600;CGSNL Gene Symbol=SCP48;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 48;Oryzabase Gene Symbol Synonym(s)=OsSCP48;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 48;Note=Peptidase S10%2C serine carboxypeptidase family protein.;Transcript_evidence=AK103461 (DDBJ%2C Best hit);ORF_evidence=NP_001151858.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=J033129M07;Oryzabase=19226;Expression=AK103461;TENOR=Os11t0213600-01;KEGG=Os11t0213600-01
Chr11	irgsp1_rep	five_prime_UTR	5902586	5902693	.	-	.	Parent=Os11t0213600-01
Chr11	irgsp1_rep	CDS	5902357	5902585	.	-	0	Parent=Os11t0213600-01
Chr11	irgsp1_rep	CDS	5901011	5901118	.	-	2	Parent=Os11t0213600-01
Chr11	irgsp1_rep	CDS	5900817	5900909	.	-	2	Parent=Os11t0213600-01
Chr11	irgsp1_rep	CDS	5900633	5900725	.	-	2	Parent=Os11t0213600-01
Chr11	irgsp1_rep	CDS	5900464	5900549	.	-	2	Parent=Os11t0213600-01
Chr11	irgsp1_rep	CDS	5900100	5900378	.	-	0	Parent=Os11t0213600-01
Chr11	irgsp1_rep	CDS	5899884	5900017	.	-	0	Parent=Os11t0213600-01
Chr11	irgsp1_rep	CDS	5899539	5899631	.	-	1	Parent=Os11t0213600-01
Chr11	irgsp1_rep	CDS	5899336	5899453	.	-	1	Parent=Os11t0213600-01
Chr11	irgsp1_rep	CDS	5899065	5899229	.	-	0	Parent=Os11t0213600-01
Chr11	irgsp1_rep	three_prime_UTR	5898818	5899064	.	-	.	Parent=Os11t0213600-01
Chr11	irgsp1_rep	mRNA	5908294	5911943	.	-	.	ID=Os11t0213700-00;Name=Os11t0213700-00;Locus_id=Os11g0213700;Note=Leucine-rich repeat%2C typical subtype containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R8W7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);TENOR=Os11t0213700-00;KEGG=Os11t0213700-00
Chr11	irgsp1_rep	CDS	5909317	5911943	.	-	0	Parent=Os11t0213700-00
Chr11	irgsp1_rep	CDS	5908294	5908414	.	-	1	Parent=Os11t0213700-00
Chr11	irgsp1_rep	mRNA	5912147	5914714	.	-	.	ID=Os11t0213733-01;Name=Os11t0213733-01;Locus_id=Os11g0213733;Note=Conserved hypothetical protein.;Transcript_evidence=AK288766 (DDBJ%2C Best hit);ORF_evidence=XP_002489292.1 (RefSeq);NIAS_FLcDNA=J090067H02;TENOR=Os11t0213733-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	5913790	5914714	.	-	.	Parent=Os11t0213733-01
Chr11	irgsp1_rep	CDS	5913640	5913789	.	-	0	Parent=Os11t0213733-01
Chr11	irgsp1_rep	three_prime_UTR	5912147	5913639	.	-	.	Parent=Os11t0213733-01
Chr11	irgsp1_rep	mRNA	5916975	5919022	.	-	.	ID=Os11t0213800-01;Name=Os11t0213800-01;Locus_id=Os11g0213800;Note=Similar to NBS-LRR disease resistance protein homologue (Fragment).;Transcript_evidence=AK064121 (DDBJ%2C Best hit);ORF_evidence=B9V0H5 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=002-102-C02;Expression=AK064121;TENOR=Os11t0213800-01;KEGG=Os11t0213800-01
Chr11	irgsp1_rep	five_prime_UTR	5918931	5919022	.	-	.	Parent=Os11t0213800-01
Chr11	irgsp1_rep	CDS	5918634	5918930	.	-	0	Parent=Os11t0213800-01
Chr11	irgsp1_rep	CDS	5917204	5918130	.	-	0	Parent=Os11t0213800-01
Chr11	irgsp1_rep	three_prime_UTR	5916975	5917203	.	-	.	Parent=Os11t0213800-01
Chr11	irgsp1_rep	mRNA	5922025	5922452	.	-	.	ID=Os11t0213900-01;Name=Os11t0213900-01;Locus_id=Os11g0213900;Note=Hypothetical conserved gene.;Transcript_evidence=AK058342 (DDBJ%2C Best hit);ORF_evidence=B9G9Z5 (UniProt);NIAS_FLcDNA=001-014-D09;Expression=AK058342;TENOR=Os11t0213900-01;KEGG=Os11t0213900-01
Chr11	irgsp1_rep	five_prime_UTR	5922421	5922452	.	-	.	Parent=Os11t0213900-01
Chr11	irgsp1_rep	CDS	5922386	5922420	.	-	0	Parent=Os11t0213900-01
Chr11	irgsp1_rep	CDS	5922110	5922293	.	-	1	Parent=Os11t0213900-01
Chr11	irgsp1_rep	three_prime_UTR	5922025	5922109	.	-	.	Parent=Os11t0213900-01
Chr11	irgsp1_rep	mRNA	5922602	5924160	.	-	.	ID=Os11t0214001-00;Name=Os11t0214001-00;Locus_id=Os11g0214001;Oryzabase Gene Name Synonym(s)=SUMO protease protein;Note=Hypothetical conserved gene.;Transcript_evidence=BT018700 (DDBJ);ORF_evidence=B9G9Z5 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase C48%2C SUMO/Sentrin/Ubl1 (IPR003653);Oryzabase=20940;TENOR=Os11t0214001-00;KEGG=Os11t0214001-00
Chr11	irgsp1_rep	CDS	5923946	5924160	.	-	0	Parent=Os11t0214001-00
Chr11	irgsp1_rep	CDS	5923663	5923830	.	-	1	Parent=Os11t0214001-00
Chr11	irgsp1_rep	CDS	5923445	5923579	.	-	1	Parent=Os11t0214001-00
Chr11	irgsp1_rep	CDS	5922875	5922956	.	-	1	Parent=Os11t0214001-00
Chr11	irgsp1_rep	CDS	5922602	5922778	.	-	0	Parent=Os11t0214001-00
Chr11	irgsp1_rep	mRNA	5936538	5938449	.	+	.	ID=Os11t0214100-00;Name=Os11t0214100-00;Locus_id=Os11g0214100;Note=Plant disease resistance response protein domain containing protein.;Transcript_evidence=EU972018 (DDBJ);ORF_evidence=A2ZCM2 (UniProt);InterPro=Plant disease resistance response protein (IPR004265);TENOR=Os11t0214100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	5936538	5936936	.	+	0	Parent=Os11t0214100-00
Chr11	irgsp1_rep	three_prime_UTR	5936937	5937122	.	+	.	Parent=Os11t0214100-00
Chr11	irgsp1_rep	three_prime_UTR	5938324	5938449	.	+	.	Parent=Os11t0214100-00
Chr11	irgsp1_rep	mRNA	5947363	5948231	.	+	.	ID=Os11t0214400-01;Name=Os11t0214400-01;Locus_id=Os11g0214400;Note=Plant disease resistance response protein family protein.;Transcript_evidence=AK111039 (DDBJ%2C Best hit);ORF_evidence=A2ZCM2 (UniProt);InterPro=Plant disease resistance response protein (IPR004265);NIAS_FLcDNA=002-175-A12;Expression=AK111039;TENOR=Os11t0214400-01;KEGG=Os11t0214400-01
Chr11	irgsp1_rep	five_prime_UTR	5947363	5947390	.	+	.	Parent=Os11t0214400-01
Chr11	irgsp1_rep	CDS	5947391	5947969	.	+	0	Parent=Os11t0214400-01
Chr11	irgsp1_rep	three_prime_UTR	5947970	5948231	.	+	.	Parent=Os11t0214400-01
Chr11	irgsp1_rep	mRNA	5962686	5974624	.	+	.	ID=Os11t0214700-00;Name=Os11t0214700-00;Locus_id=Os11g0214700;Note=Plant disease resistance response protein domain containing protein.;Transcript_evidence=AK366583 (DDBJ);ORF_evidence=NP_001067501.2 (RefSeq);InterPro=Plant disease resistance response protein (IPR004265);TENOR=Os11t0214700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	5962686	5963034	.	+	0	Parent=Os11t0214700-00
Chr11	irgsp1_rep	CDS	5974332	5974624	.	+	2	Parent=Os11t0214700-00
Chr11	irgsp1_rep	mRNA	5978273	5978986	.	+	.	ID=Os11t0214900-00;Name=Os11t0214900-00;Locus_id=Os11g0214900;Note=Plant disease resistance response protein family protein.;Transcript_evidence=EU972018 (DDBJ);ORF_evidence=NP_001067503.1 (RefSeq);InterPro=Plant disease resistance response protein (IPR004265);TENOR=Os11t0214900-00;KEGG=Os11t0214900-00
Chr11	irgsp1_rep	five_prime_UTR	5978273	5978416	.	+	.	Parent=Os11t0214900-00
Chr11	irgsp1_rep	CDS	5978417	5978986	.	+	0	Parent=Os11t0214900-00
Chr11	irgsp1_rep	mRNA	5996508	5997392	.	+	.	ID=Os11t0215100-01;Name=Os11t0215100-01;Locus_id=Os11g0215100;Note=Plant disease resistance response protein family protein.;Transcript_evidence=AK107711 (DDBJ%2C Best hit);ORF_evidence=A2ZCM3 (UniProt);InterPro=Plant disease resistance response protein (IPR004265);NIAS_FLcDNA=002-132-D10;Expression=AK107711;TENOR=Os11t0215100-01;KEGG=Os11t0215100-01
Chr11	irgsp1_rep	five_prime_UTR	5996508	5996588	.	+	.	Parent=Os11t0215100-01
Chr11	irgsp1_rep	CDS	5996589	5997134	.	+	0	Parent=Os11t0215100-01
Chr11	irgsp1_rep	three_prime_UTR	5997135	5997392	.	+	.	Parent=Os11t0215100-01
Chr11	irgsp1_rep	mRNA	6001907	6002424	.	-	.	ID=Os11t0215300-00;Name=Os11t0215300-00;Locus_id=Os11g0215300;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001067505.1 (RefSeq);TENOR=Os11t0215300-00;KEGG=Os11t0215300-00
Chr11	irgsp1_rep	CDS	6002277	6002424	.	-	0	Parent=Os11t0215300-00
Chr11	irgsp1_rep	CDS	6001907	6002181	.	-	2	Parent=Os11t0215300-00
Chr11	irgsp1_rep	mRNA	6020972	6024097	.	-	.	ID=Os11t0215400-01;Name=Os11t0215400-01;Locus_id=Os11g0215400;Note=Peptidase aspartic%2C catalytic domain containing protein.;Transcript_evidence=AK105540 (DDBJ%2C Best hit);ORF_evidence=A0SHP9 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=001-127-H09;Oryzabase=20222;Expression=AK105540;TENOR=Os11t0215400-01;KEGG=Os11t0215400-01
Chr11	irgsp1_rep	five_prime_UTR	6024091	6024097	.	-	.	Parent=Os11t0215400-01
Chr11	irgsp1_rep	CDS	6023961	6024090	.	-	0	Parent=Os11t0215400-01
Chr11	irgsp1_rep	CDS	6021062	6022218	.	-	2	Parent=Os11t0215400-01
Chr11	irgsp1_rep	three_prime_UTR	6020972	6021061	.	-	.	Parent=Os11t0215400-01
Chr11	irgsp1_rep	mRNA	6059390	6065339	.	+	.	ID=Os11t0216000-01;Name=Os11t0216000-01;Locus_id=Os11g0216000;Oryzabase Gene Name Synonym(s)=Pyruvate kinase;Note=Pyruvate kinase family protein.;Transcript_evidence=AK101789 (DDBJ%2C Best hit);ORF_evidence=B8BJP8 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyruvate kinase activity (GO:0004743),Molecular Function: potassium ion binding (GO:0030955);InterPro=Pyruvate kinase (IPR001697),Pyruvate kinase-like%2C insert domain (IPR011037),Pyruvate kinase%2C barrel (IPR015793),Pyruvate kinase%2C alpha/beta (IPR015794),Pyruvate kinase%2C C-terminal (IPR015795),Pyruvate kinase%2C beta-barrel insert domain (IPR015806),Pyruvate/Phosphoenolpyruvate kinase (IPR015813);NIAS_FLcDNA=J033065I20;Oryzabase=17653;Expression=AK101789;TENOR=Os11t0216000-01;KEGG=Os11t0216000-01 (EC:2.7.1.40)
Chr11	irgsp1_rep	five_prime_UTR	6059390	6059498	.	+	.	Parent=Os11t0216000-01
Chr11	irgsp1_rep	CDS	6059499	6059567	.	+	0	Parent=Os11t0216000-01
Chr11	irgsp1_rep	CDS	6060120	6060216	.	+	0	Parent=Os11t0216000-01
Chr11	irgsp1_rep	CDS	6060315	6060412	.	+	2	Parent=Os11t0216000-01
Chr11	irgsp1_rep	CDS	6061354	6061509	.	+	0	Parent=Os11t0216000-01
Chr11	irgsp1_rep	CDS	6061805	6061882	.	+	0	Parent=Os11t0216000-01
Chr11	irgsp1_rep	CDS	6061954	6062085	.	+	0	Parent=Os11t0216000-01
Chr11	irgsp1_rep	CDS	6062675	6062755	.	+	0	Parent=Os11t0216000-01
Chr11	irgsp1_rep	CDS	6063261	6063329	.	+	0	Parent=Os11t0216000-01
Chr11	irgsp1_rep	CDS	6063416	6063505	.	+	0	Parent=Os11t0216000-01
Chr11	irgsp1_rep	CDS	6063820	6063964	.	+	0	Parent=Os11t0216000-01
Chr11	irgsp1_rep	CDS	6064037	6064125	.	+	2	Parent=Os11t0216000-01
Chr11	irgsp1_rep	CDS	6064203	6064298	.	+	0	Parent=Os11t0216000-01
Chr11	irgsp1_rep	CDS	6064380	6064447	.	+	0	Parent=Os11t0216000-01
Chr11	irgsp1_rep	CDS	6064523	6064622	.	+	1	Parent=Os11t0216000-01
Chr11	irgsp1_rep	CDS	6064729	6064785	.	+	0	Parent=Os11t0216000-01
Chr11	irgsp1_rep	CDS	6064998	6065156	.	+	0	Parent=Os11t0216000-01
Chr11	irgsp1_rep	three_prime_UTR	6065157	6065339	.	+	.	Parent=Os11t0216000-01
Chr11	irgsp1_rep	mRNA	6060190	6065434	.	+	.	ID=Os11t0216000-02;Name=Os11t0216000-02;Locus_id=Os11g0216000;Oryzabase Gene Name Synonym(s)=Pyruvate kinase;Note=Similar to Pyruvate kinase.;Transcript_evidence=AK060466 (DDBJ%2C Best hit);ORF_evidence=B8BJP8 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyruvate kinase activity (GO:0004743),Molecular Function: potassium ion binding (GO:0030955);InterPro=Pyruvate kinase (IPR001697),Pyruvate kinase-like%2C insert domain (IPR011037),Pyruvate kinase%2C barrel (IPR015793),Pyruvate kinase%2C alpha/beta (IPR015794),Pyruvate kinase%2C C-terminal (IPR015795),Pyruvate kinase%2C beta-barrel insert domain (IPR015806),Pyruvate/Phosphoenolpyruvate kinase (IPR015813);NIAS_FLcDNA=001-012-C12;Oryzabase=17653;Expression=AK060466;TENOR=Os11t0216000-02;KEGG=Os11t0216000-02 (EC:2.7.1.40)
Chr11	irgsp1_rep	five_prime_UTR	6060190	6060191	.	+	.	Parent=Os11t0216000-02
Chr11	irgsp1_rep	CDS	6060192	6060216	.	+	0	Parent=Os11t0216000-02
Chr11	irgsp1_rep	CDS	6060315	6060412	.	+	2	Parent=Os11t0216000-02
Chr11	irgsp1_rep	CDS	6061354	6061509	.	+	0	Parent=Os11t0216000-02
Chr11	irgsp1_rep	CDS	6061805	6061882	.	+	0	Parent=Os11t0216000-02
Chr11	irgsp1_rep	CDS	6061954	6062085	.	+	0	Parent=Os11t0216000-02
Chr11	irgsp1_rep	CDS	6062675	6062755	.	+	0	Parent=Os11t0216000-02
Chr11	irgsp1_rep	CDS	6063261	6063329	.	+	0	Parent=Os11t0216000-02
Chr11	irgsp1_rep	CDS	6063416	6063505	.	+	0	Parent=Os11t0216000-02
Chr11	irgsp1_rep	CDS	6063820	6063964	.	+	0	Parent=Os11t0216000-02
Chr11	irgsp1_rep	CDS	6064037	6064125	.	+	2	Parent=Os11t0216000-02
Chr11	irgsp1_rep	CDS	6064203	6064298	.	+	0	Parent=Os11t0216000-02
Chr11	irgsp1_rep	CDS	6064380	6064447	.	+	0	Parent=Os11t0216000-02
Chr11	irgsp1_rep	CDS	6064523	6064622	.	+	1	Parent=Os11t0216000-02
Chr11	irgsp1_rep	CDS	6064729	6064785	.	+	0	Parent=Os11t0216000-02
Chr11	irgsp1_rep	CDS	6064998	6065156	.	+	0	Parent=Os11t0216000-02
Chr11	irgsp1_rep	three_prime_UTR	6065157	6065434	.	+	.	Parent=Os11t0216000-02
Chr11	irgsp1_rep	mRNA	6065311	6066797	.	-	.	ID=Os11t0216100-01;Name=Os11t0216100-01;Locus_id=Os11g0216100;Oryzabase Gene Name Synonym(s)=rice DJC75 homolog;Note=Similar to Heat shock protein binding protein.;Transcript_evidence=AK059179 (DDBJ%2C Best hit);ORF_evidence=B6T7S9 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095);NIAS_FLcDNA=001-023-F11;Oryzabase=19670;TENOR=Os11t0216100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	6066797	6066797	.	-	.	Parent=Os11t0216100-01
Chr11	irgsp1_rep	CDS	6066387	6066796	.	-	0	Parent=Os11t0216100-01
Chr11	irgsp1_rep	CDS	6065525	6065945	.	-	1	Parent=Os11t0216100-01
Chr11	irgsp1_rep	three_prime_UTR	6065311	6065524	.	-	.	Parent=Os11t0216100-01
Chr11	irgsp1_rep	mRNA	6068242	6073759	.	-	.	ID=Os11t0216300-01;Name=Os11t0216300-01;Locus_id=Os11g0216300;Note=ABC-1 domain containing protein.;Transcript_evidence=AK067129 (DDBJ%2C Best hit);ORF_evidence=XP_002869329.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),ABC-1 (IPR004147),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J013095E13;Expression=AK067129;TENOR=Os11t0216300-01;KEGG=Os11t0216300-01
Chr11	irgsp1_rep	five_prime_UTR	6073758	6073759	.	-	.	Parent=Os11t0216300-01
Chr11	irgsp1_rep	CDS	6073604	6073757	.	-	0	Parent=Os11t0216300-01
Chr11	irgsp1_rep	CDS	6072525	6072847	.	-	2	Parent=Os11t0216300-01
Chr11	irgsp1_rep	CDS	6072236	6072442	.	-	0	Parent=Os11t0216300-01
Chr11	irgsp1_rep	CDS	6072024	6072113	.	-	0	Parent=Os11t0216300-01
Chr11	irgsp1_rep	CDS	6071771	6071917	.	-	0	Parent=Os11t0216300-01
Chr11	irgsp1_rep	CDS	6071227	6071391	.	-	0	Parent=Os11t0216300-01
Chr11	irgsp1_rep	CDS	6070851	6070991	.	-	0	Parent=Os11t0216300-01
Chr11	irgsp1_rep	CDS	6070577	6070756	.	-	0	Parent=Os11t0216300-01
Chr11	irgsp1_rep	CDS	6070109	6070304	.	-	0	Parent=Os11t0216300-01
Chr11	irgsp1_rep	CDS	6069676	6069803	.	-	2	Parent=Os11t0216300-01
Chr11	irgsp1_rep	CDS	6069514	6069585	.	-	0	Parent=Os11t0216300-01
Chr11	irgsp1_rep	CDS	6069139	6069251	.	-	0	Parent=Os11t0216300-01
Chr11	irgsp1_rep	CDS	6068915	6069062	.	-	1	Parent=Os11t0216300-01
Chr11	irgsp1_rep	CDS	6068735	6068804	.	-	0	Parent=Os11t0216300-01
Chr11	irgsp1_rep	CDS	6068583	6068653	.	-	2	Parent=Os11t0216300-01
Chr11	irgsp1_rep	three_prime_UTR	6068242	6068582	.	-	.	Parent=Os11t0216300-01
Chr11	irgsp1_rep	mRNA	6068242	6071393	.	-	.	ID=Os11t0216300-02;Name=Os11t0216300-02;Locus_id=Os11g0216300;Note=Similar to ABC1 family protein%2C expressed.;Transcript_evidence=AK062044 (DDBJ%2C Best hit);ORF_evidence=Q2R8U3 (UniProt);GO=Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=ABC-1 (IPR004147),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=001-044-A08;Expression=AK062044;TENOR=Os11t0216300-02;KEGG=Os11t0216300-02
Chr11	irgsp1_rep	five_prime_UTR	6071392	6071393	.	-	.	Parent=Os11t0216300-02
Chr11	irgsp1_rep	CDS	6071227	6071391	.	-	0	Parent=Os11t0216300-02
Chr11	irgsp1_rep	CDS	6070851	6070991	.	-	0	Parent=Os11t0216300-02
Chr11	irgsp1_rep	CDS	6070577	6070756	.	-	0	Parent=Os11t0216300-02
Chr11	irgsp1_rep	CDS	6070109	6070304	.	-	0	Parent=Os11t0216300-02
Chr11	irgsp1_rep	CDS	6069676	6069803	.	-	2	Parent=Os11t0216300-02
Chr11	irgsp1_rep	CDS	6069514	6069585	.	-	0	Parent=Os11t0216300-02
Chr11	irgsp1_rep	CDS	6069139	6069251	.	-	0	Parent=Os11t0216300-02
Chr11	irgsp1_rep	CDS	6068915	6069062	.	-	1	Parent=Os11t0216300-02
Chr11	irgsp1_rep	CDS	6068735	6068804	.	-	0	Parent=Os11t0216300-02
Chr11	irgsp1_rep	CDS	6068583	6068653	.	-	2	Parent=Os11t0216300-02
Chr11	irgsp1_rep	three_prime_UTR	6068242	6068582	.	-	.	Parent=Os11t0216300-02
Chr11	irgsp1_rep	mRNA	6085217	6085491	.	-	.	ID=Os11t0216350-00;Name=Os11t0216350-00;Locus_id=Os11g0216350;Note=Non-protein coding transcript.;Transcript_evidence=FP100628 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0216350-00
Chr11	irgsp1_rep	exon	6085217	6085491	.	-	.	Parent=Os11t0216350-00
Chr11	irgsp1_rep	mRNA	6088031	6091472	.	-	.	ID=Os11t0216400-01;Name=Os11t0216400-01;Locus_id=Os11g0216400;CGSNL Gene Symbol=MORF1;CGSNL Gene Name=MULTIPLE ORGANELLAR RNA EDITING FACTOR 1;Oryzabase Gene Symbol Synonym(s)=OsMORF1;Oryzabase Gene Name Synonym(s)=multiple organellar RNA editing factor 1;Note=Peptidase S8%2C subtilisin-related domain containing protein.;Transcript_evidence=AK287882 (DDBJ%2C Best hit);ORF_evidence=B6SJX7 (UniProt);InterPro=Peptidase S8%2C subtilisin-related (IPR015500);NIAS_FLcDNA=J065207I10;Oryzabase=22394;TENOR=Os11t0216400-01;KEGG=Os11t0216400-01
Chr11	irgsp1_rep	five_prime_UTR	6091428	6091472	.	-	.	Parent=Os11t0216400-01
Chr11	irgsp1_rep	CDS	6091057	6091427	.	-	0	Parent=Os11t0216400-01
Chr11	irgsp1_rep	CDS	6089686	6089783	.	-	1	Parent=Os11t0216400-01
Chr11	irgsp1_rep	CDS	6089528	6089593	.	-	2	Parent=Os11t0216400-01
Chr11	irgsp1_rep	CDS	6088848	6089425	.	-	2	Parent=Os11t0216400-01
Chr11	irgsp1_rep	CDS	6088356	6088367	.	-	0	Parent=Os11t0216400-01
Chr11	irgsp1_rep	three_prime_UTR	6088031	6088355	.	-	.	Parent=Os11t0216400-01
Chr11	irgsp1_rep	mRNA	6102863	6105794	.	+	.	ID=Os11t0216900-01;Name=Os11t0216900-01;Locus_id=Os11g0216900;CGSNL Gene Symbol=IDI2;CGSNL Gene Name=IRON-DEFICIENCY-INDUCED PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsIDI2;Oryzabase Gene Name Synonym(s)=Fe-deficiency-induced protein 2%2C iron-deficiency-induced protein 2;Note=Similar to IDI2.;Transcript_evidence=AK060549 (DDBJ%2C Best hit);ORF_evidence=Q0ITU1 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Biological Process: cellular biosynthetic process (GO:0044249);InterPro=Initiation factor 2B-related (IPR000649),Putative translation initiation factor%2C aIF-2BI/5-methylthioribose-1-phosphate isomerase (IPR005251),Initiation factor 2B alpha/beta/delta (IPR011559);NIAS_FLcDNA=001-021-H07;Oryzabase=14074;Expression=AK060549;TENOR=Os11t0216900-01;KEGG=Os11t0216900-01
Chr11	irgsp1_rep	five_prime_UTR	6102863	6102965	.	+	.	Parent=Os11t0216900-01
Chr11	irgsp1_rep	CDS	6102966	6103031	.	+	0	Parent=Os11t0216900-01
Chr11	irgsp1_rep	CDS	6103125	6103180	.	+	0	Parent=Os11t0216900-01
Chr11	irgsp1_rep	CDS	6103345	6103503	.	+	1	Parent=Os11t0216900-01
Chr11	irgsp1_rep	CDS	6103609	6103708	.	+	1	Parent=Os11t0216900-01
Chr11	irgsp1_rep	CDS	6104300	6104442	.	+	0	Parent=Os11t0216900-01
Chr11	irgsp1_rep	CDS	6104547	6104652	.	+	1	Parent=Os11t0216900-01
Chr11	irgsp1_rep	CDS	6104958	6105096	.	+	0	Parent=Os11t0216900-01
Chr11	irgsp1_rep	CDS	6105182	6105450	.	+	2	Parent=Os11t0216900-01
Chr11	irgsp1_rep	CDS	6105553	6105639	.	+	0	Parent=Os11t0216900-01
Chr11	irgsp1_rep	three_prime_UTR	6105640	6105794	.	+	.	Parent=Os11t0216900-01
Chr11	irgsp1_rep	mRNA	6102867	6106487	.	+	.	ID=Os11t0216900-02;Name=Os11t0216900-02;Locus_id=Os11g0216900;CGSNL Gene Symbol=IDI2;CGSNL Gene Name=IRON-DEFICIENCY-INDUCED PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsIDI2;Oryzabase Gene Name Synonym(s)=Fe-deficiency-induced protein 2%2C iron-deficiency-induced protein 2;Note=Similar to IDI2.;Transcript_evidence=AK060326 (DDBJ%2C Best hit);ORF_evidence=Q0ITU1 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Biological Process: cellular biosynthetic process (GO:0044249);InterPro=Initiation factor 2B-related (IPR000649),Putative translation initiation factor%2C aIF-2BI/5-methylthioribose-1-phosphate isomerase (IPR005251),Initiation factor 2B alpha/beta/delta (IPR011559);NIAS_FLcDNA=001-007-H10;Oryzabase=14074;Expression=AK060326;TENOR=Os11t0216900-02;KEGG=Os11t0216900-02
Chr11	irgsp1_rep	five_prime_UTR	6102867	6102965	.	+	.	Parent=Os11t0216900-02
Chr11	irgsp1_rep	CDS	6102966	6103031	.	+	0	Parent=Os11t0216900-02
Chr11	irgsp1_rep	CDS	6103125	6103180	.	+	0	Parent=Os11t0216900-02
Chr11	irgsp1_rep	CDS	6103345	6103503	.	+	1	Parent=Os11t0216900-02
Chr11	irgsp1_rep	CDS	6103609	6103708	.	+	1	Parent=Os11t0216900-02
Chr11	irgsp1_rep	CDS	6104300	6104442	.	+	0	Parent=Os11t0216900-02
Chr11	irgsp1_rep	CDS	6104547	6104652	.	+	1	Parent=Os11t0216900-02
Chr11	irgsp1_rep	CDS	6104958	6105096	.	+	0	Parent=Os11t0216900-02
Chr11	irgsp1_rep	CDS	6105182	6105450	.	+	2	Parent=Os11t0216900-02
Chr11	irgsp1_rep	CDS	6105553	6105639	.	+	0	Parent=Os11t0216900-02
Chr11	irgsp1_rep	three_prime_UTR	6105640	6105656	.	+	.	Parent=Os11t0216900-02
Chr11	irgsp1_rep	three_prime_UTR	6106191	6106487	.	+	.	Parent=Os11t0216900-02
Chr11	irgsp1_rep	mRNA	6102931	6105820	.	+	.	ID=Os11t0216900-03;Name=Os11t0216900-03;Locus_id=Os11g0216900;CGSNL Gene Symbol=IDI2;CGSNL Gene Name=IRON-DEFICIENCY-INDUCED PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsIDI2;Oryzabase Gene Name Synonym(s)=Fe-deficiency-induced protein 2%2C iron-deficiency-induced protein 2;Note=Similar to IDI2.;Transcript_evidence=AK100869 (DDBJ%2C Best hit);ORF_evidence=Q0ITU1 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Biological Process: cellular biosynthetic process (GO:0044249);InterPro=Initiation factor 2B-related (IPR000649),Putative translation initiation factor%2C aIF-2BI/5-methylthioribose-1-phosphate isomerase (IPR005251),Initiation factor 2B alpha/beta/delta (IPR011559);NIAS_FLcDNA=J023124H10;Oryzabase=14074;Expression=AK100869;TENOR=Os11t0216900-03;KEGG=Os11t0216900-03
Chr11	irgsp1_rep	five_prime_UTR	6102931	6102965	.	+	.	Parent=Os11t0216900-03
Chr11	irgsp1_rep	CDS	6102966	6103031	.	+	0	Parent=Os11t0216900-03
Chr11	irgsp1_rep	CDS	6103125	6103180	.	+	0	Parent=Os11t0216900-03
Chr11	irgsp1_rep	CDS	6103345	6103503	.	+	1	Parent=Os11t0216900-03
Chr11	irgsp1_rep	CDS	6103609	6103708	.	+	1	Parent=Os11t0216900-03
Chr11	irgsp1_rep	CDS	6104300	6104442	.	+	0	Parent=Os11t0216900-03
Chr11	irgsp1_rep	CDS	6104547	6104652	.	+	1	Parent=Os11t0216900-03
Chr11	irgsp1_rep	CDS	6104958	6105096	.	+	0	Parent=Os11t0216900-03
Chr11	irgsp1_rep	CDS	6105182	6105450	.	+	2	Parent=Os11t0216900-03
Chr11	irgsp1_rep	CDS	6105553	6105639	.	+	0	Parent=Os11t0216900-03
Chr11	irgsp1_rep	three_prime_UTR	6105640	6105820	.	+	.	Parent=Os11t0216900-03
Chr11	irgsp1_rep	mRNA	6109578	6113725	.	+	.	ID=Os11t0217300-01;Name=Os11t0217300-01;Locus_id=Os11g0217300;Note=Mevalonate and galactokinase family protein.;Transcript_evidence=AK070818 (DDBJ%2C Best hit);ORF_evidence=B6TGG3 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: phosphorylation (GO:0016310),Cellular Component: cytoplasm (GO:0005737),Molecular Function: ATP binding (GO:0005524),Molecular Function: kinase activity (GO:0016301),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=GHMP kinase (IPR006204),Mevalonate/galactokinase (IPR006206),GHMP kinase%2C C-terminal (IPR013750),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=J023068B12;Expression=AK070818;TENOR=Os11t0217300-01;KEGG=Os11t0217300-01
Chr11	irgsp1_rep	five_prime_UTR	6109578	6109675	.	+	.	Parent=Os11t0217300-01
Chr11	irgsp1_rep	five_prime_UTR	6110365	6110384	.	+	.	Parent=Os11t0217300-01
Chr11	irgsp1_rep	CDS	6110385	6110588	.	+	0	Parent=Os11t0217300-01
Chr11	irgsp1_rep	CDS	6111761	6111910	.	+	0	Parent=Os11t0217300-01
Chr11	irgsp1_rep	CDS	6112162	6112350	.	+	0	Parent=Os11t0217300-01
Chr11	irgsp1_rep	CDS	6112479	6112595	.	+	0	Parent=Os11t0217300-01
Chr11	irgsp1_rep	CDS	6112690	6112850	.	+	0	Parent=Os11t0217300-01
Chr11	irgsp1_rep	CDS	6112950	6113190	.	+	1	Parent=Os11t0217300-01
Chr11	irgsp1_rep	three_prime_UTR	6113191	6113725	.	+	.	Parent=Os11t0217300-01
Chr11	irgsp1_rep	mRNA	6114798	6127569	.	-	.	ID=Os11t0217500-01;Name=Os11t0217500-01;Locus_id=Os11g0217500;Oryzabase Gene Symbol Synonym(s)=OsPP119;Oryzabase Gene Name Synonym(s)=Protein phosphatase 119;Note=Similar to mRNA capping enzyme%2C C-terminal domain containing protein%2C expressed.;Transcript_evidence=AK100578 (DDBJ%2C Best hit);ORF_evidence=Q2R8T5 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Biological Process: dephosphorylation (GO:0016311),Molecular Function: protein tyrosine phosphatase activity (GO:0004725),Molecular Function: protein tyrosine/serine/threonine phosphatase activity (GO:0008138),Molecular Function: phosphatase activity (GO:0016791);InterPro=Dual specificity phosphatase%2C catalytic domain (IPR000340),Protein-tyrosine/Dual-specificity phosphatase (IPR000387),Protein-tyrosine phosphatase%2C active site (IPR016130);NIAS_FLcDNA=J023105K02;Oryzabase=18659;TENOR=Os11t0217500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	6127353	6127569	.	-	.	Parent=Os11t0217500-01
Chr11	irgsp1_rep	five_prime_UTR	6123939	6123987	.	-	.	Parent=Os11t0217500-01
Chr11	irgsp1_rep	CDS	6123810	6123938	.	-	0	Parent=Os11t0217500-01
Chr11	irgsp1_rep	CDS	6123298	6123433	.	-	0	Parent=Os11t0217500-01
Chr11	irgsp1_rep	CDS	6123031	6123182	.	-	2	Parent=Os11t0217500-01
Chr11	irgsp1_rep	CDS	6122664	6122747	.	-	0	Parent=Os11t0217500-01
Chr11	irgsp1_rep	CDS	6122527	6122589	.	-	0	Parent=Os11t0217500-01
Chr11	irgsp1_rep	CDS	6121094	6121231	.	-	0	Parent=Os11t0217500-01
Chr11	irgsp1_rep	CDS	6120752	6121018	.	-	0	Parent=Os11t0217500-01
Chr11	irgsp1_rep	three_prime_UTR	6120412	6120751	.	-	.	Parent=Os11t0217500-01
Chr11	irgsp1_rep	three_prime_UTR	6119368	6120199	.	-	.	Parent=Os11t0217500-01
Chr11	irgsp1_rep	three_prime_UTR	6119160	6119282	.	-	.	Parent=Os11t0217500-01
Chr11	irgsp1_rep	three_prime_UTR	6118026	6118154	.	-	.	Parent=Os11t0217500-01
Chr11	irgsp1_rep	three_prime_UTR	6117834	6117932	.	-	.	Parent=Os11t0217500-01
Chr11	irgsp1_rep	three_prime_UTR	6116344	6116433	.	-	.	Parent=Os11t0217500-01
Chr11	irgsp1_rep	three_prime_UTR	6116158	6116242	.	-	.	Parent=Os11t0217500-01
Chr11	irgsp1_rep	three_prime_UTR	6115711	6115838	.	-	.	Parent=Os11t0217500-01
Chr11	irgsp1_rep	three_prime_UTR	6114798	6115328	.	-	.	Parent=Os11t0217500-01
Chr11	irgsp1_rep	mRNA	6143031	6146613	.	+	.	ID=Os11t0218000-01;Name=Os11t0218000-01;Locus_id=Os11g0218000;CGSNL Gene Symbol=BZIP82;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 82;Oryzabase Gene Symbol Synonym(s)=OsbZIP82;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 82;Note=bZIP transcription factor%2C bZIP-1 domain containing protein.;Transcript_evidence=AK072267 (DDBJ%2C Best hit);ORF_evidence=B6UCY7 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827);NIAS_FLcDNA=J023004I18;Oryzabase=10161;Expression=AK072267;TENOR=Os11t0218000-01;KEGG=Os11t0218000-01
Chr11	irgsp1_rep	five_prime_UTR	6143031	6143232	.	+	.	Parent=Os11t0218000-01
Chr11	irgsp1_rep	five_prime_UTR	6143646	6143664	.	+	.	Parent=Os11t0218000-01
Chr11	irgsp1_rep	CDS	6143665	6144350	.	+	0	Parent=Os11t0218000-01
Chr11	irgsp1_rep	CDS	6144885	6144960	.	+	1	Parent=Os11t0218000-01
Chr11	irgsp1_rep	CDS	6145050	6145176	.	+	0	Parent=Os11t0218000-01
Chr11	irgsp1_rep	CDS	6145903	6146108	.	+	2	Parent=Os11t0218000-01
Chr11	irgsp1_rep	three_prime_UTR	6146109	6146613	.	+	.	Parent=Os11t0218000-01
Chr11	irgsp1_rep	mRNA	6146834	6148416	.	-	.	ID=Os11t0218100-01;Name=Os11t0218100-01;Locus_id=Os11g0218100;Note=Similar to RNApol24.;Transcript_evidence=AK070936 (DDBJ%2C Best hit);ORF_evidence=B2BXR4 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899);InterPro=DNA-directed RNA polymerase%2C RBP11-like (IPR009025);NIAS_FLcDNA=J023065O17;TENOR=Os11t0218100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	6147932	6148416	.	-	.	Parent=Os11t0218100-01
Chr11	irgsp1_rep	CDS	6147694	6147931	.	-	0	Parent=Os11t0218100-01
Chr11	irgsp1_rep	CDS	6147042	6147184	.	-	2	Parent=Os11t0218100-01
Chr11	irgsp1_rep	three_prime_UTR	6146834	6147041	.	-	.	Parent=Os11t0218100-01
Chr11	irgsp1_rep	mRNA	6155842	6156093	.	-	.	ID=Os11t0218200-00;Name=Os11t0218200-00;Locus_id=Os11g0218200;Note=Similar to RNApol24.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R8S9 (UniProt);TENOR=Os11t0218200-00;KEGG=Os11t0218200-00
Chr11	irgsp1_rep	CDS	6155842	6156093	.	-	0	Parent=Os11t0218200-00
Chr11	irgsp1_rep	mRNA	6187696	6188042	.	+	.	ID=Os11t0218560-00;Name=Os11t0218560-00;Locus_id=Os11g0218560;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=EU946314 (DDBJ);ORF_evidence=Q10LH8 (UniProt);TENOR=Os11t0218560-00
Chr11	irgsp1_rep	CDS	6187696	6187935	.	+	0	Parent=Os11t0218560-00
Chr11	irgsp1_rep	three_prime_UTR	6187936	6188042	.	+	.	Parent=Os11t0218560-00
Chr11	irgsp1_rep	mRNA	6188378	6188807	.	+	.	ID=Os11t0218619-00;Name=Os11t0218619-00;Locus_id=Os11g0218619;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=EU946314 (DDBJ);ORF_evidence=Q10LH8 (UniProt);TENOR=Os11t0218619-00
Chr11	irgsp1_rep	CDS	6188378	6188755	.	+	0	Parent=Os11t0218619-00
Chr11	irgsp1_rep	three_prime_UTR	6188756	6188807	.	+	.	Parent=Os11t0218619-00
Chr11	irgsp1_rep	mRNA	6189723	6190015	.	+	.	ID=Os11t0218678-00;Name=Os11t0218678-00;Locus_id=Os11g0218678;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=EU946314 (DDBJ);ORF_evidence=Q10LH8 (UniProt);TENOR=Os11t0218678-00
Chr11	irgsp1_rep	CDS	6189723	6189950	.	+	0	Parent=Os11t0218678-00
Chr11	irgsp1_rep	three_prime_UTR	6189951	6190015	.	+	.	Parent=Os11t0218678-00
Chr11	irgsp1_rep	mRNA	6192714	6193229	.	+	.	ID=Os11t0218737-00;Name=Os11t0218737-00;Locus_id=Os11g0218737;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=EU946314 (DDBJ);ORF_evidence=Q10LH8 (UniProt);TENOR=Os11t0218737-00
Chr11	irgsp1_rep	five_prime_UTR	6192714	6192794	.	+	.	Parent=Os11t0218737-00
Chr11	irgsp1_rep	CDS	6192795	6193229	.	+	0	Parent=Os11t0218737-00
Chr11	irgsp1_rep	mRNA	6201172	6204657	.	-	.	ID=Os11t0219000-01;Name=Os11t0219000-01;Locus_id=Os11g0219000;Oryzabase Gene Symbol Synonym(s)=OsClp12%2C CLP12;Oryzabase Gene Name Synonym(s)=Clp protease 12%2C CLP PROTEASE 12;Note=Peptidase S16%2C lon N-terminal domain containing protein.;Transcript_evidence=AK066071 (DDBJ%2C Best hit);ORF_evidence=XP_002449362.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: ATP-dependent peptidase activity (GO:0004176);InterPro=Peptidase S16%2C lon N-terminal (IPR003111),PUA-like domain (IPR015947);NIAS_FLcDNA=J013056B11;Oryzabase=20038;Expression=AK066071;TENOR=Os11t0219000-01;KEGG=Os11t0219000-01
Chr11	irgsp1_rep	five_prime_UTR	6204621	6204657	.	-	.	Parent=Os11t0219000-01
Chr11	irgsp1_rep	CDS	6204462	6204620	.	-	0	Parent=Os11t0219000-01
Chr11	irgsp1_rep	CDS	6203673	6203741	.	-	0	Parent=Os11t0219000-01
Chr11	irgsp1_rep	CDS	6203155	6203268	.	-	0	Parent=Os11t0219000-01
Chr11	irgsp1_rep	CDS	6203022	6203054	.	-	0	Parent=Os11t0219000-01
Chr11	irgsp1_rep	three_prime_UTR	6202975	6203021	.	-	.	Parent=Os11t0219000-01
Chr11	irgsp1_rep	three_prime_UTR	6202084	6202215	.	-	.	Parent=Os11t0219000-01
Chr11	irgsp1_rep	three_prime_UTR	6201852	6201993	.	-	.	Parent=Os11t0219000-01
Chr11	irgsp1_rep	three_prime_UTR	6201172	6201506	.	-	.	Parent=Os11t0219000-01
Chr11	irgsp1_rep	mRNA	6218498	6226650	.	+	.	ID=Os11t0219400-01;Name=Os11t0219400-01;Locus_id=Os11g0219400;Note=Ankyrin repeat containing protein.;Transcript_evidence=AK099123 (DDBJ%2C Best hit),AK069850 (DDBJ%2C Best hit);ORF_evidence=B9FQE6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J023034F19,J023034G19;Expression=AK099123;TENOR=Os11t0219400-01;KEGG=Os11t0219400-01
Chr11	irgsp1_rep	five_prime_UTR	6218498	6218707	.	+	.	Parent=Os11t0219400-01
Chr11	irgsp1_rep	CDS	6218708	6218863	.	+	0	Parent=Os11t0219400-01
Chr11	irgsp1_rep	CDS	6219640	6220122	.	+	0	Parent=Os11t0219400-01
Chr11	irgsp1_rep	CDS	6220455	6220835	.	+	0	Parent=Os11t0219400-01
Chr11	irgsp1_rep	CDS	6224232	6224279	.	+	0	Parent=Os11t0219400-01
Chr11	irgsp1_rep	three_prime_UTR	6224280	6224381	.	+	.	Parent=Os11t0219400-01
Chr11	irgsp1_rep	three_prime_UTR	6224665	6224762	.	+	.	Parent=Os11t0219400-01
Chr11	irgsp1_rep	three_prime_UTR	6224878	6224924	.	+	.	Parent=Os11t0219400-01
Chr11	irgsp1_rep	three_prime_UTR	6225382	6225422	.	+	.	Parent=Os11t0219400-01
Chr11	irgsp1_rep	three_prime_UTR	6225994	6226330	.	+	.	Parent=Os11t0219400-01
Chr11	irgsp1_rep	three_prime_UTR	6226431	6226650	.	+	.	Parent=Os11t0219400-01
Chr11	irgsp1_rep	mRNA	6234766	6242687	.	-	.	ID=Os11t0219750-00;Name=Os11t0219750-00;Locus_id=Os11g0219750;Note=Conserved hypothetical protein.;Transcript_evidence=CT835633 (DDBJ%2C Best hit);ORF_evidence=Q2QUW5 (UniProt);TENOR=Os11t0219750-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	6242337	6242687	.	-	.	Parent=Os11t0219750-00
Chr11	irgsp1_rep	five_prime_UTR	6234909	6235122	.	-	.	Parent=Os11t0219750-00
Chr11	irgsp1_rep	CDS	6234837	6234908	.	-	0	Parent=Os11t0219750-00
Chr11	irgsp1_rep	three_prime_UTR	6234766	6234836	.	-	.	Parent=Os11t0219750-00
Chr11	irgsp1_rep	mRNA	6265242	6270024	.	+	.	ID=Os11t0220100-01;Name=Os11t0220100-01;Locus_id=Os11g0220100;Note=Conserved hypothetical protein.;Transcript_evidence=AK100457 (DDBJ%2C Best hit);ORF_evidence=B9GAK4 (UniProt);NIAS_FLcDNA=J023091I01;TENOR=Os11t0220100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	6265242	6266047	.	+	.	Parent=Os11t0220100-01
Chr11	irgsp1_rep	five_prime_UTR	6266121	6266231	.	+	.	Parent=Os11t0220100-01
Chr11	irgsp1_rep	five_prime_UTR	6266376	6266600	.	+	.	Parent=Os11t0220100-01
Chr11	irgsp1_rep	five_prime_UTR	6267156	6267211	.	+	.	Parent=Os11t0220100-01
Chr11	irgsp1_rep	five_prime_UTR	6267728	6267821	.	+	.	Parent=Os11t0220100-01
Chr11	irgsp1_rep	five_prime_UTR	6267926	6268029	.	+	.	Parent=Os11t0220100-01
Chr11	irgsp1_rep	five_prime_UTR	6268143	6268809	.	+	.	Parent=Os11t0220100-01
Chr11	irgsp1_rep	CDS	6268810	6268917	.	+	0	Parent=Os11t0220100-01
Chr11	irgsp1_rep	three_prime_UTR	6268918	6270024	.	+	.	Parent=Os11t0220100-01
Chr11	irgsp1_rep	mRNA	6285765	6287989	.	-	.	ID=Os11t0220300-01;Name=Os11t0220300-01;Locus_id=Os11g0220300;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=AK068820 (DDBJ%2C Best hit);ORF_evidence=Q2R8G8 (UniProt);InterPro=TLDc (IPR006571);NIAS_FLcDNA=J013164O07;Expression=AK068820;TENOR=Os11t0220300-01;KEGG=Os11t0220300-01
Chr11	irgsp1_rep	five_prime_UTR	6287947	6287989	.	-	.	Parent=Os11t0220300-01
Chr11	irgsp1_rep	CDS	6287750	6287946	.	-	0	Parent=Os11t0220300-01
Chr11	irgsp1_rep	CDS	6287187	6287649	.	-	1	Parent=Os11t0220300-01
Chr11	irgsp1_rep	three_prime_UTR	6285765	6287186	.	-	.	Parent=Os11t0220300-01
Chr11	irgsp1_rep	mRNA	6288905	6291118	.	+	.	ID=Os11t0220400-01;Name=Os11t0220400-01;Locus_id=Os11g0220400;Note=Similar to ATPase%2C AAA family protein%2C expressed.;Transcript_evidence=AK109713 (DDBJ%2C Best hit);ORF_evidence=Q2R8Q8 (UniProt);NIAS_FLcDNA=002-145-H04;TENOR=Os11t0220400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	6288905	6288967	.	+	.	Parent=Os11t0220400-01
Chr11	irgsp1_rep	CDS	6288968	6289285	.	+	0	Parent=Os11t0220400-01
Chr11	irgsp1_rep	CDS	6289841	6290002	.	+	0	Parent=Os11t0220400-01
Chr11	irgsp1_rep	CDS	6290109	6290920	.	+	0	Parent=Os11t0220400-01
Chr11	irgsp1_rep	CDS	6291007	6291118	.	+	1	Parent=Os11t0220400-01
Chr11	irgsp1_rep	mRNA	6289219	6290209	.	-	.	ID=Os11t0220450-00;Name=Os11t0220450-00;Locus_id=Os11g0220450;Note=Non-protein coding transcript.;Transcript_evidence=BT086870 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0220450-00
Chr11	irgsp1_rep	exon	6290110	6290209	.	-	.	Parent=Os11t0220450-00
Chr11	irgsp1_rep	exon	6289823	6290004	.	-	.	Parent=Os11t0220450-00
Chr11	irgsp1_rep	exon	6289219	6289268	.	-	.	Parent=Os11t0220450-00
Chr11	irgsp1_rep	mRNA	6296549	6300875	.	-	.	ID=Os11t0220500-00;Name=Os11t0220500-00;Locus_id=Os11g0220500;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0033l06 (Wheat FLcDNA);ORF_evidence=Q2R8Q7 (UniProt);TENOR=Os11t0220500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	6300361	6300875	.	-	0	Parent=Os11t0220500-00
Chr11	irgsp1_rep	CDS	6299720	6300307	.	-	1	Parent=Os11t0220500-00
Chr11	irgsp1_rep	CDS	6296549	6297992	.	-	1	Parent=Os11t0220500-00
Chr11	irgsp1_rep	mRNA	6297159	6300837	.	+	.	ID=Os11t0220550-00;Name=Os11t0220550-00;Locus_id=Os11g0220550;Note=Hypothetical protein.;Transcript_evidence=tplb0033h24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0220550-00
Chr11	irgsp1_rep	five_prime_UTR	6297159	6298038	.	+	.	Parent=Os11t0220550-00
Chr11	irgsp1_rep	five_prime_UTR	6299867	6300020	.	+	.	Parent=Os11t0220550-00
Chr11	irgsp1_rep	CDS	6300021	6300837	.	+	0	Parent=Os11t0220550-00
Chr11	irgsp1_rep	mRNA	6306848	6307729	.	-	.	ID=Os11t0220600-00;Name=Os11t0220600-00;Locus_id=Os11g0220600;Note=Tetraspanin domain containing protein.;Transcript_evidence=AK359276 (DDBJ);ORF_evidence=Q2R8Q6 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Tetraspanin (IPR018499);TENOR=Os11t0220600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	6307676	6307729	.	-	.	Parent=Os11t0220600-00
Chr11	irgsp1_rep	CDS	6306848	6307675	.	-	0	Parent=Os11t0220600-00
Chr11	irgsp1_rep	mRNA	6308514	6310646	.	+	.	ID=Os11t0220700-01;Name=Os11t0220700-01;Locus_id=Os11g0220700;Note=Hypothetical protein.;Transcript_evidence=AK069168 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J023008P16;TENOR=Os11t0220700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	6308514	6308819	.	+	0	Parent=Os11t0220700-01
Chr11	irgsp1_rep	CDS	6310180	6310524	.	+	0	Parent=Os11t0220700-01
Chr11	irgsp1_rep	three_prime_UTR	6310525	6310646	.	+	.	Parent=Os11t0220700-01
Chr11	irgsp1_rep	mRNA	6321270	6323933	.	+	.	ID=Os11t0220800-01;Name=Os11t0220800-01;Locus_id=Os11g0220800;Note=Similar to 60S ribosomal protein L10 (QM protein homolog).;Transcript_evidence=AK060902 (DDBJ%2C Best hit),AK102971 (DDBJ%2C Best hit),AK103710 (DDBJ%2C Best hit);ORF_evidence=Q0ITS8 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L10e (IPR001197),Ribosomal protein L10e/L16 (IPR016180),Ribosomal protein L10e%2C conserved site (IPR018255);NIAS_FLcDNA=001-035-D11,J033115J23,J033136P16;TENOR=Os11t0220800-01
Chr11	irgsp1_rep	five_prime_UTR	6321270	6321335	.	+	.	Parent=Os11t0220800-01
Chr11	irgsp1_rep	CDS	6321336	6321345	.	+	0	Parent=Os11t0220800-01
Chr11	irgsp1_rep	CDS	6322641	6323142	.	+	2	Parent=Os11t0220800-01
Chr11	irgsp1_rep	CDS	6323234	6323315	.	+	1	Parent=Os11t0220800-01
Chr11	irgsp1_rep	CDS	6323560	6323640	.	+	0	Parent=Os11t0220800-01
Chr11	irgsp1_rep	three_prime_UTR	6323641	6323933	.	+	.	Parent=Os11t0220800-01
Chr11	irgsp1_rep	mRNA	6335893	6342309	.	+	.	ID=Os11t0221000-01;Name=Os11t0221000-01;Locus_id=Os11g0221000;CGSNL Gene Symbol=IAA27;Oryzabase Gene Symbol Synonym(s)=OsIAA27;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 27;Note=Aux/IAA_ARF_dimerisation domain containing protein.;Transcript_evidence=AK102073 (DDBJ%2C Best hit);ORF_evidence=P0C129 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Aux/IAA-ARF-dimerisation (IPR011525);NIAS_FLcDNA=J033082G16;Oryzabase=10914;Expression=AK102073;TENOR=Os11t0221000-01;KEGG=Os11t0221000-01
Chr11	irgsp1_rep	five_prime_UTR	6335893	6336075	.	+	.	Parent=Os11t0221000-01
Chr11	irgsp1_rep	CDS	6336076	6336545	.	+	0	Parent=Os11t0221000-01
Chr11	irgsp1_rep	CDS	6339979	6340375	.	+	1	Parent=Os11t0221000-01
Chr11	irgsp1_rep	three_prime_UTR	6340376	6342309	.	+	.	Parent=Os11t0221000-01
Chr11	irgsp1_rep	mRNA	6348483	6349758	.	+	.	ID=Os11t0221200-00;Name=Os11t0221200-00;Locus_id=Os11g0221200;CGSNL Gene Symbol=IAA28;Oryzabase Gene Symbol Synonym(s)=OsIAA28;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 28;Note=Putative auxin-responsive protein IAA28.;Transcript_evidence=P0C130 (UniProt);ORF_evidence=P0C130 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Aux/IAA-ARF-dimerisation (IPR011525);Oryzabase=10915;TENOR=Os11t0221200-00
Chr11	irgsp1_rep	CDS	6348483	6348669	.	+	0	Parent=Os11t0221200-00
Chr11	irgsp1_rep	CDS	6349156	6349279	.	+	2	Parent=Os11t0221200-00
Chr11	irgsp1_rep	CDS	6349387	6349442	.	+	1	Parent=Os11t0221200-00
Chr11	irgsp1_rep	CDS	6349637	6349758	.	+	2	Parent=Os11t0221200-00
Chr11	irgsp1_rep	mRNA	6353504	6356016	.	-	.	ID=Os11t0221250-01;Name=Os11t0221250-01;Locus_id=Os11g0221250;Note=Non-protein coding transcript.;Transcript_evidence=AK288921 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090081M10;TENOR=Os11t0221250-01
Chr11	irgsp1_rep	exon	6353504	6356016	.	-	.	Parent=Os11t0221250-01
Chr11	irgsp1_rep	mRNA	6356838	6358201	.	+	.	ID=Os11t0221300-00;Name=Os11t0221300-00;Locus_id=Os11g0221300;CGSNL Gene Symbol=IAA29;Oryzabase Gene Symbol Synonym(s)=OsIAA29%2C OsEnS-141;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 29%2C endosperm-specific gene 141;Note=AUX/IAA protein family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001067526.2 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Aux/IAA-ARF-dimerisation (IPR011525);Oryzabase=10916;TENOR=Os11t0221300-00;KEGG=Os11t0221300-00
Chr11	irgsp1_rep	CDS	6356838	6357012	.	+	0	Parent=Os11t0221300-00
Chr11	irgsp1_rep	CDS	6357490	6357613	.	+	2	Parent=Os11t0221300-00
Chr11	irgsp1_rep	CDS	6357770	6357825	.	+	1	Parent=Os11t0221300-00
Chr11	irgsp1_rep	CDS	6358041	6358201	.	+	2	Parent=Os11t0221300-00
Chr11	irgsp1_rep	mRNA	6381668	6385437	.	-	.	ID=Os11t0222000-01;Name=Os11t0222000-01;Locus_id=Os11g0222000;Oryzabase Gene Symbol Synonym(s)=OsCRR4;Oryzabase Gene Name Synonym(s)=CRINKLY4-RELATED protein 4;Note=Regulator of Chromosome condensation/beta-lactamase-inhibitor protein II domain containing protein.;Transcript_evidence=AK288291 (DDBJ%2C Best hit);ORF_evidence=NP_001176433.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Regulator of Chromosome condensation/beta-lactamase-inhibitor protein II (IPR009091),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J090019D24;Oryzabase=10380;TENOR=Os11t0222000-01;KEGG=Os11t0222000-01
Chr11	irgsp1_rep	five_prime_UTR	6385342	6385437	.	-	.	Parent=Os11t0222000-01
Chr11	irgsp1_rep	CDS	6382906	6385341	.	-	0	Parent=Os11t0222000-01
Chr11	irgsp1_rep	three_prime_UTR	6381668	6382905	.	-	.	Parent=Os11t0222000-01
Chr11	irgsp1_rep	mRNA	6382725	6385445	.	+	.	ID=Os11t0222100-00;Name=Os11t0222100-00;Locus_id=Os11g0222100;Note=Hypothetical protein.;Transcript_evidence=AK366175 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0222100-00
Chr11	irgsp1_rep	five_prime_UTR	6382725	6384412	.	+	.	Parent=Os11t0222100-00
Chr11	irgsp1_rep	CDS	6384413	6385445	.	+	0	Parent=Os11t0222100-00
Chr11	irgsp1_rep	mRNA	6392784	6394751	.	-	.	ID=Os11t0222200-01;Name=Os11t0222200-01;Locus_id=Os11g0222200;Oryzabase Gene Symbol Synonym(s)=OsSRP-PLP%2C OrysaZ9;Oryzabase Gene Name Synonym(s)=non-inhibitory serpin-Z9;Note=Protease inhibitor I4%2C serpin%2C plant domain containing protein.;Transcript_evidence=AK287588 (DDBJ%2C Best hit);ORF_evidence=B6TJI3 (UniProt);GO=Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Protease inhibitor I4%2C serpin (IPR000215),Protease inhibitor I4%2C serpin%2C plant (IPR015554),Protease inhibitor I4%2C serpin%2C conserved site (IPR023795),Serpin domain (IPR023796);NIAS_FLcDNA=J065045K19;Oryzabase=11578;TENOR=Os11t0222200-01;KEGG=Os11t0222200-01
Chr11	irgsp1_rep	five_prime_UTR	6394739	6394751	.	-	.	Parent=Os11t0222200-01
Chr11	irgsp1_rep	CDS	6394190	6394738	.	-	0	Parent=Os11t0222200-01
Chr11	irgsp1_rep	CDS	6392945	6393715	.	-	0	Parent=Os11t0222200-01
Chr11	irgsp1_rep	three_prime_UTR	6392784	6392944	.	-	.	Parent=Os11t0222200-01
Chr11	irgsp1_rep	mRNA	6398466	6398952	.	-	.	ID=Os11t0222320-00;Name=Os11t0222320-00;Locus_id=Os11g0222320;Note=Ribonuclease H-like domain containing protein.;Transcript_evidence=EU962606 (DDBJ);ORF_evidence=B8BJR1 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Ribonuclease H-like (IPR012337);TENOR=Os11t0222320-00
Chr11	irgsp1_rep	CDS	6398545	6398952	.	-	0	Parent=Os11t0222320-00
Chr11	irgsp1_rep	three_prime_UTR	6398466	6398544	.	-	.	Parent=Os11t0222320-00
Chr11	irgsp1_rep	mRNA	6400773	6400997	.	+	.	ID=Os11t0222560-00;Name=Os11t0222560-00;Locus_id=Os11g0222560;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os11t0222560-00
Chr11	irgsp1_rep	CDS	6400773	6400997	.	+	0	Parent=Os11t0222560-00
Chr11	irgsp1_rep	mRNA	6417573	6417989	.	+	.	ID=Os11t0222800-00;Name=Os11t0222800-00;Locus_id=Os11g0222800;Note=Similar to LGC1.;Transcript_evidence=EU947580 (DDBJ);ORF_evidence=Q53P07 (UniProt);TENOR=Os11t0222800-00
Chr11	irgsp1_rep	CDS	6417573	6417989	.	+	0	Parent=Os11t0222800-00
Chr11	irgsp1_rep	mRNA	6419861	6424350	.	-	.	ID=Os11t0222900-01;Name=Os11t0222900-01;Locus_id=Os11g0222900;Note=NB-ARC domain containing protein.;Transcript_evidence=AK102237 (DDBJ%2C Best hit);ORF_evidence=B9GA12 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J033088C12;Oryzabase=14966;Expression=AK102237;TENOR=Os11t0222900-01;KEGG=Os11t0222900-01
Chr11	irgsp1_rep	five_prime_UTR	6424187	6424350	.	-	.	Parent=Os11t0222900-01
Chr11	irgsp1_rep	CDS	6423345	6424186	.	-	0	Parent=Os11t0222900-01
Chr11	irgsp1_rep	CDS	6420903	6422991	.	-	1	Parent=Os11t0222900-01
Chr11	irgsp1_rep	three_prime_UTR	6420859	6420902	.	-	.	Parent=Os11t0222900-01
Chr11	irgsp1_rep	three_prime_UTR	6419861	6420305	.	-	.	Parent=Os11t0222900-01
Chr11	irgsp1_rep	mRNA	6420713	6424204	.	-	.	ID=Os11t0222900-02;Name=Os11t0222900-02;Locus_id=Os11g0222900;Note=NB-ARC domain containing protein.;Transcript_evidence=AK101439 (DDBJ%2C Best hit);ORF_evidence=A5HJ87 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J033039D21;Oryzabase=14966;Expression=AK101439;TENOR=Os11t0222900-02;KEGG=Os11t0222900-02
Chr11	irgsp1_rep	five_prime_UTR	6424187	6424204	.	-	.	Parent=Os11t0222900-02
Chr11	irgsp1_rep	CDS	6423345	6424186	.	-	0	Parent=Os11t0222900-02
Chr11	irgsp1_rep	CDS	6420903	6422991	.	-	1	Parent=Os11t0222900-02
Chr11	irgsp1_rep	three_prime_UTR	6420713	6420902	.	-	.	Parent=Os11t0222900-02
Chr11	irgsp1_rep	mRNA	6420036	6423330	.	+	.	ID=Os11t0223000-01;Name=Os11t0223000-01;Locus_id=Os11g0223000;Note=Hypothetical gene.;Transcript_evidence=AK100469 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023093B09;Expression=AK100469;TENOR=Os11t0223000-01;KEGG=Os11t0223000-01
Chr11	irgsp1_rep	five_prime_UTR	6420036	6420323	.	+	.	Parent=Os11t0223000-01
Chr11	irgsp1_rep	CDS	6420324	6420349	.	+	0	Parent=Os11t0223000-01
Chr11	irgsp1_rep	CDS	6421037	6421223	.	+	1	Parent=Os11t0223000-01
Chr11	irgsp1_rep	three_prime_UTR	6421224	6423330	.	+	.	Parent=Os11t0223000-01
Chr11	irgsp1_rep	mRNA	6440363	6445718	.	+	.	ID=Os11t0223201-01;Name=Os11t0223201-01;Locus_id=Os11g0223201;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=AK288550 (DDBJ%2C Best hit);ORF_evidence=Q53NZ9 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J090046L08;TENOR=Os11t0223201-01;KEGG=Os11t0223201-01
Chr11	irgsp1_rep	five_prime_UTR	6440363	6440363	.	+	.	Parent=Os11t0223201-01
Chr11	irgsp1_rep	CDS	6440364	6441052	.	+	0	Parent=Os11t0223201-01
Chr11	irgsp1_rep	CDS	6441528	6443315	.	+	1	Parent=Os11t0223201-01
Chr11	irgsp1_rep	CDS	6443881	6443920	.	+	1	Parent=Os11t0223201-01
Chr11	irgsp1_rep	three_prime_UTR	6443921	6445718	.	+	.	Parent=Os11t0223201-01
Chr11	irgsp1_rep	mRNA	6440583	6442705	.	-	.	ID=Os11t0223300-00;Name=Os11t0223300-00;Locus_id=Os11g0223300;Note=Hypothetical protein.;Transcript_evidence=tplb0021d08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0223300-00
Chr11	irgsp1_rep	five_prime_UTR	6441532	6442705	.	-	.	Parent=Os11t0223300-00
Chr11	irgsp1_rep	five_prime_UTR	6440963	6441057	.	-	.	Parent=Os11t0223300-00
Chr11	irgsp1_rep	CDS	6440583	6440962	.	-	0	Parent=Os11t0223300-00
Chr11	irgsp1_rep	mRNA	6448155	6449526	.	+	.	ID=Os11t0223400-01;Name=Os11t0223400-01;Locus_id=Os11g0223400;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=AK112108 (DDBJ%2C Best hit);ORF_evidence=Q53NZ9 (UniProt);NIAS_FLcDNA=002-111-C04;Expression=AK112108;TENOR=Os11t0223400-01;KEGG=Os11t0223400-01
Chr11	irgsp1_rep	CDS	6448155	6449375	.	+	0	Parent=Os11t0223400-01
Chr11	irgsp1_rep	three_prime_UTR	6449376	6449526	.	+	.	Parent=Os11t0223400-01
Chr11	irgsp1_rep	mRNA	6478122	6480430	.	-	.	ID=Os11t0224040-00;Name=Os11t0224040-00;Locus_id=Os11g0224040;Note=Hypothetical protein.;Transcript_evidence=tplb0032b15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0224040-00
Chr11	irgsp1_rep	five_prime_UTR	6479985	6480430	.	-	.	Parent=Os11t0224040-00
Chr11	irgsp1_rep	five_prime_UTR	6479819	6479932	.	-	.	Parent=Os11t0224040-00
Chr11	irgsp1_rep	five_prime_UTR	6479443	6479676	.	-	.	Parent=Os11t0224040-00
Chr11	irgsp1_rep	five_prime_UTR	6479110	6479362	.	-	.	Parent=Os11t0224040-00
Chr11	irgsp1_rep	CDS	6478735	6479109	.	-	0	Parent=Os11t0224040-00
Chr11	irgsp1_rep	three_prime_UTR	6478122	6478734	.	-	.	Parent=Os11t0224040-00
Chr11	irgsp1_rep	mRNA	6494799	6495209	.	+	.	ID=Os11t0224200-00;Name=Os11t0224200-00;Locus_id=Os11g0224200;Note=Similar to LGC1.;Transcript_evidence=EU947580 (DDBJ);ORF_evidence=Q53P07 (UniProt);TENOR=Os11t0224200-00
Chr11	irgsp1_rep	CDS	6494799	6495209	.	+	0	Parent=Os11t0224200-00
Chr11	irgsp1_rep	mRNA	6506252	6506695	.	-	.	ID=Os11t0224301-00;Name=Os11t0224301-00;Locus_id=Os11g0224301;Note=Similar to LGC1.;Transcript_evidence=AK375202 (DDBJ);ORF_evidence=Q53P07 (UniProt);TENOR=Os11t0224301-00
Chr11	irgsp1_rep	CDS	6506252	6506695	.	-	0	Parent=Os11t0224301-00
Chr11	irgsp1_rep	mRNA	6509996	6511215	.	-	.	ID=Os11t0224400-01;Name=Os11t0224400-01;Locus_id=Os11g0224400;Note=Conserved hypothetical protein.;Transcript_evidence=AK070006 (DDBJ%2C Best hit),AK069051 (DDBJ%2C Best hit),AK100214 (DDBJ%2C Best hit);ORF_evidence=B9GA18 (UniProt);NIAS_FLcDNA=J023036K21,J023004H24,J023044O08;Expression=AK070006;TENOR=Os11t0224400-01;KEGG=Os11t0224400-01
Chr11	irgsp1_rep	five_prime_UTR	6511162	6511215	.	-	.	Parent=Os11t0224400-01
Chr11	irgsp1_rep	CDS	6510274	6511161	.	-	0	Parent=Os11t0224400-01
Chr11	irgsp1_rep	three_prime_UTR	6509996	6510273	.	-	.	Parent=Os11t0224400-01
Chr11	irgsp1_rep	mRNA	6519995	6521680	.	-	.	ID=Os11t0224600-01;Name=Os11t0224600-01;Locus_id=Os11g0224600;Note=Conserved hypothetical protein.;Transcript_evidence=AK100785 (DDBJ%2C Best hit);ORF_evidence=A3C9V5 (UniProt);NIAS_FLcDNA=J023120N10;Expression=AK100785;TENOR=Os11t0224600-01;KEGG=Os11t0224600-01
Chr11	irgsp1_rep	five_prime_UTR	6521630	6521680	.	-	.	Parent=Os11t0224600-01
Chr11	irgsp1_rep	CDS	6520151	6521629	.	-	0	Parent=Os11t0224600-01
Chr11	irgsp1_rep	three_prime_UTR	6519995	6520150	.	-	.	Parent=Os11t0224600-01
Chr11	irgsp1_rep	mRNA	6530949	6532328	.	+	.	ID=Os11t0224800-00;Name=Os11t0224800-00;Locus_id=Os11g0224800;Oryzabase Gene Symbol Synonym(s)=OsSRP-PSG%2C OrysaZ8;Oryzabase Gene Name Synonym(s)=serpin-Z8;Note=Protease inhibitor I4%2C serpin domain containing protein.;Transcript_evidence=AK359881 (DDBJ);ORF_evidence=Q53P09 (UniProt);GO=Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Protease inhibitor I4%2C serpin (IPR000215),Protease inhibitor I4%2C serpin%2C plant (IPR015554),Serpin domain (IPR023796);Oryzabase=11590;TENOR=Os11t0224800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	6530949	6531365	.	+	0	Parent=Os11t0224800-00
Chr11	irgsp1_rep	CDS	6531456	6532307	.	+	0	Parent=Os11t0224800-00
Chr11	irgsp1_rep	three_prime_UTR	6532308	6532328	.	+	.	Parent=Os11t0224800-00
Chr11	irgsp1_rep	mRNA	6532813	6535926	.	-	.	ID=Os11t0224900-00;Name=Os11t0224900-00;Locus_id=Os11g0224900;Oryzabase Gene Symbol Synonym(s)=Os11gRGA3;Oryzabase Gene Name Synonym(s)=R-gene analog 3;Note=Similar to NBS-LRR protein (Fragment).;Transcript_evidence=BT009451 (DDBJ);ORF_evidence=A1Z0K0 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);Oryzabase=9408;TENOR=Os11t0224900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	6532861	6535926	.	-	0	Parent=Os11t0224900-00
Chr11	irgsp1_rep	three_prime_UTR	6532813	6532860	.	-	.	Parent=Os11t0224900-00
Chr11	irgsp1_rep	mRNA	6540629	6541618	.	+	.	ID=Os11t0225000-01;Name=Os11t0225000-01;Locus_id=Os11g0225000;CGSNL Gene Symbol=RLCK319;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 319;Oryzabase Gene Symbol Synonym(s)=OsRLCK319%2C OsCRLK21%2C CRLK21;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 319;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK062328 (DDBJ%2C Best hit);ORF_evidence=Q53P17 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-101-D06;Oryzabase=18990;Expression=AK062328;TENOR=Os11t0225000-01;KEGG=Os11t0225000-01 (EC:2.7.11.1)
Chr11	irgsp1_rep	CDS	6540629	6540777	.	+	0	Parent=Os11t0225000-01
Chr11	irgsp1_rep	CDS	6540889	6541039	.	+	1	Parent=Os11t0225000-01
Chr11	irgsp1_rep	CDS	6541153	6541320	.	+	0	Parent=Os11t0225000-01
Chr11	irgsp1_rep	three_prime_UTR	6541321	6541347	.	+	.	Parent=Os11t0225000-01
Chr11	irgsp1_rep	three_prime_UTR	6541426	6541618	.	+	.	Parent=Os11t0225000-01
Chr11	irgsp1_rep	mRNA	6541924	6546026	.	-	.	ID=Os11t0225100-01;Name=Os11t0225100-01;Locus_id=Os11g0225100;RAP-DB Gene Symbol Synonym(s)=Os11gRGA4%2C RGA4%2C Pia;RAP-DB Gene Name Synonym(s)=R-gene analog 4;Note=Nucleotide binding site-leucine rich repeats (NBS-LRRs) protein%2C Resistance to the blast fungus%2C (Nippponbare: susceptible to the blast fungus carrying the AVR-Pia);Transcript_evidence=AK066950,AB604624;ORF_evidence=F7J0M6;GO=Molecular Function: ADP binding (GO:0043531);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),Leucine-rich repeat domain superfamily (IPR032675),Virus X resistance protein-like%2C coiled-coil domain (IPR038005),NB-ARC (IPR002182);NIAS_FLcDNA=J013090P15;Manual Curation=July 19%2C 2018;Literature_PMID=23548743,21251109;TENOR=Os11t0225100-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	6545739	6546026	.	-	.	Parent=Os11t0225100-01
Chr11	irgsp1_rep	CDS	6544897	6545738	.	-	0	Parent=Os11t0225100-01
Chr11	irgsp1_rep	CDS	6542301	6544503	.	-	1	Parent=Os11t0225100-01
Chr11	irgsp1_rep	three_prime_UTR	6541924	6542300	.	-	.	Parent=Os11t0225100-01
Chr11	irgsp1_rep	mRNA	6551769	6551992	.	-	.	ID=Os11t0225200-00;Name=Os11t0225200-00;Locus_id=Os11g0225200;Note=Hypothetical protein.;Transcript_evidence=FP099934 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0225200-00
Chr11	irgsp1_rep	five_prime_UTR	6551992	6551992	.	-	.	Parent=Os11t0225200-00
Chr11	irgsp1_rep	CDS	6551769	6551991	.	-	0	Parent=Os11t0225200-00
Chr11	irgsp1_rep	mRNA	6554522	6561687	.	+	.	ID=Os11t0225300-01;Name=Os11t0225300-01;Locus_id=Os11g0225300;RAP-DB Gene Symbol Synonym(s)=Os11gRGA5%2C RGA5%2C Pia;RAP-DB Gene Name Synonym(s)=R-gene analog 5;Oryzabase Gene Symbol Synonym(s)=Os11gRGA5%2C RGA5%2C RGA5-A%2C RGA5-B%2C Pi5;Oryzabase Gene Name Synonym(s)=R-gene analog 5;Note=Nucleotide binding site-leucine rich repeats (NBS-LRRs) protein%2C Resistance protein%2C Resistance to the blast fungus%2C (Nippponbare: susceptible to the blast fungus carrying the AVR-Pia);Transcript_evidence=AK072355,AB604629;ORF_evidence=Q2R8L1;GO=Molecular Function: ADP binding (GO:0043531);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),Leucine-rich repeat domain superfamily (IPR032675),NB-ARC (IPR002182);NIAS_FLcDNA=J023055L12;Manual Curation=July 19%2C 2018;Literature_PMID=23548743,21251109;Oryzabase=9410;Expression=AK072355;TENOR=Os11t0225300-01;KEGG=Os11t0225300-01
Chr11	irgsp1_rep	five_prime_UTR	6554522	6554527	.	+	.	Parent=Os11t0225300-01
Chr11	irgsp1_rep	CDS	6554528	6555357	.	+	0	Parent=Os11t0225300-01
Chr11	irgsp1_rep	CDS	6556476	6558608	.	+	1	Parent=Os11t0225300-01
Chr11	irgsp1_rep	CDS	6560421	6561363	.	+	1	Parent=Os11t0225300-01
Chr11	irgsp1_rep	three_prime_UTR	6561364	6561687	.	+	.	Parent=Os11t0225300-01
Chr11	irgsp1_rep	mRNA	6554554	6555417	.	+	.	ID=Os11t0225300-02;Name=Os11t0225300-02;Locus_id=Os11g0225300;Oryzabase Gene Symbol Synonym(s)=Os11gRGA5%2C RGA5%2C RGA5-A%2C RGA5-B%2C Pi5;Oryzabase Gene Name Synonym(s)=R-gene analog 5;Note=Hypothetical conserved gene.;Transcript_evidence=AK111306 (DDBJ%2C Best hit);ORF_evidence=A2ZCS7 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);NIAS_FLcDNA=002-181-B09;Oryzabase=9410;Expression=AK111306;TENOR=Os11t0225300-02;KEGG=Os11t0225300-02
Chr11	irgsp1_rep	five_prime_UTR	6554554	6554554	.	+	.	Parent=Os11t0225300-02
Chr11	irgsp1_rep	CDS	6554555	6555361	.	+	0	Parent=Os11t0225300-02
Chr11	irgsp1_rep	three_prime_UTR	6555362	6555417	.	+	.	Parent=Os11t0225300-02
Chr11	irgsp1_rep	mRNA	6554549	6558264	.	-	.	ID=Os11t0225566-00;Name=Os11t0225566-00;Locus_id=Os11g0225566;Note=Hypothetical protein.;Transcript_evidence=tplb0061j05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0225566-00
Chr11	irgsp1_rep	five_prime_UTR	6557714	6558264	.	-	.	Parent=Os11t0225566-00
Chr11	irgsp1_rep	five_prime_UTR	6556515	6557659	.	-	.	Parent=Os11t0225566-00
Chr11	irgsp1_rep	five_prime_UTR	6555116	6555393	.	-	.	Parent=Os11t0225566-00
Chr11	irgsp1_rep	CDS	6554660	6555115	.	-	0	Parent=Os11t0225566-00
Chr11	irgsp1_rep	three_prime_UTR	6554549	6554659	.	-	.	Parent=Os11t0225566-00
Chr11	irgsp1_rep	mRNA	6594662	6595795	.	+	.	ID=Os11t0226100-00;Name=Os11t0226100-00;Locus_id=Os11g0226100;Note=Similar to MAP kinase kinase.;Transcript_evidence=EU968473 (DDBJ);ORF_evidence=Q069I6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os11t0226100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	6594662	6594780	.	+	.	Parent=Os11t0226100-00
Chr11	irgsp1_rep	five_prime_UTR	6594922	6594942	.	+	.	Parent=Os11t0226100-00
Chr11	irgsp1_rep	CDS	6594943	6595150	.	+	0	Parent=Os11t0226100-00
Chr11	irgsp1_rep	CDS	6595249	6595421	.	+	2	Parent=Os11t0226100-00
Chr11	irgsp1_rep	CDS	6595529	6595795	.	+	0	Parent=Os11t0226100-00
Chr11	irgsp1_rep	mRNA	6599802	6601409	.	+	.	ID=Os11t0226201-00;Name=Os11t0226201-00;Locus_id=Os11g0226201;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=AK354774 (DDBJ);ORF_evidence=Q2R8K3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os11t0226201-00;KEGG=Os11t0226201-00 (EC:2.7.11.1)
Chr11	irgsp1_rep	CDS	6599802	6599960	.	+	0	Parent=Os11t0226201-00
Chr11	irgsp1_rep	CDS	6600050	6600308	.	+	0	Parent=Os11t0226201-00
Chr11	irgsp1_rep	CDS	6600556	6600787	.	+	2	Parent=Os11t0226201-00
Chr11	irgsp1_rep	CDS	6600899	6601049	.	+	1	Parent=Os11t0226201-00
Chr11	irgsp1_rep	CDS	6601140	6601409	.	+	0	Parent=Os11t0226201-00
Chr11	irgsp1_rep	mRNA	6602476	6602703	.	-	.	ID=Os11t0226301-00;Name=Os11t0226301-00;Locus_id=Os11g0226301;Note=Non-protein coding transcript.;Transcript_evidence=CT835682 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os11t0226301-00
Chr11	irgsp1_rep	exon	6602476	6602703	.	-	.	Parent=Os11t0226301-00
Chr11	irgsp1_rep	mRNA	6606427	6614047	.	-	.	ID=Os11t0226400-01;Name=Os11t0226400-01;Locus_id=Os11g0226400;Note=Similar to Nitrate-induced NOI protein%2C expressed.;Transcript_evidence=AK109807 (DDBJ%2C Best hit);ORF_evidence=Q2R8K0 (UniProt);InterPro=Pathogenic type III effector avirulence factor Avr cleavage site (IPR008700);NIAS_FLcDNA=002-147-G05;TENOR=Os11t0226400-01;B5toI1=Exon-intron structures and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	6614046	6614047	.	-	.	Parent=Os11t0226400-01
Chr11	irgsp1_rep	CDS	6612928	6614045	.	-	0	Parent=Os11t0226400-01
Chr11	irgsp1_rep	CDS	6612085	6612134	.	-	1	Parent=Os11t0226400-01
Chr11	irgsp1_rep	CDS	6611037	6611143	.	-	2	Parent=Os11t0226400-01
Chr11	irgsp1_rep	CDS	6609550	6609882	.	-	0	Parent=Os11t0226400-01
Chr11	irgsp1_rep	CDS	6609397	6609426	.	-	0	Parent=Os11t0226400-01
Chr11	irgsp1_rep	three_prime_UTR	6609342	6609396	.	-	.	Parent=Os11t0226400-01
Chr11	irgsp1_rep	three_prime_UTR	6606427	6607087	.	-	.	Parent=Os11t0226400-01
Chr11	irgsp1_rep	mRNA	6612949	6615523	.	+	.	ID=Os11t0226550-00;Name=Os11t0226550-00;Locus_id=Os11g0226550;Note=Hypothetical protein.;Transcript_evidence=tplb0021d08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0226550-00
Chr11	irgsp1_rep	five_prime_UTR	6612949	6614207	.	+	.	Parent=Os11t0226550-00
Chr11	irgsp1_rep	CDS	6614208	6614486	.	+	0	Parent=Os11t0226550-00
Chr11	irgsp1_rep	three_prime_UTR	6614487	6614879	.	+	.	Parent=Os11t0226550-00
Chr11	irgsp1_rep	three_prime_UTR	6615272	6615523	.	+	.	Parent=Os11t0226550-00
Chr11	irgsp1_rep	mRNA	6624842	6629238	.	+	.	ID=Os11t0226700-01;Name=Os11t0226700-01;Locus_id=Os11g0226700;Note=Hypothetical conserved gene.;Transcript_evidence=AK288731 (DDBJ%2C Best hit);ORF_evidence=Q2R8J8 (UniProt);NIAS_FLcDNA=J090063G05;TENOR=Os11t0226700-01;KEGG=Os11t0226700-01
Chr11	irgsp1_rep	five_prime_UTR	6624842	6624843	.	+	.	Parent=Os11t0226700-01
Chr11	irgsp1_rep	CDS	6624844	6625668	.	+	0	Parent=Os11t0226700-01
Chr11	irgsp1_rep	three_prime_UTR	6625669	6629238	.	+	.	Parent=Os11t0226700-01
Chr11	irgsp1_rep	mRNA	6631719	6636377	.	-	.	ID=Os11t0226800-00;Name=Os11t0226800-00;Locus_id=Os11g0226800;Oryzabase Gene Symbol Synonym(s)=YR5;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=AF456245 (DDBJ%2C Best hit);ORF_evidence=Q2R8J7 (UniProt);Oryzabase=15177;TENOR=Os11t0226800-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	6636287	6636377	.	-	.	Parent=Os11t0226800-00
Chr11	irgsp1_rep	five_prime_UTR	6635727	6635787	.	-	.	Parent=Os11t0226800-00
Chr11	irgsp1_rep	five_prime_UTR	6634663	6634667	.	-	.	Parent=Os11t0226800-00
Chr11	irgsp1_rep	CDS	6634324	6634662	.	-	0	Parent=Os11t0226800-00
Chr11	irgsp1_rep	three_prime_UTR	6631719	6634323	.	-	.	Parent=Os11t0226800-00
Chr11	irgsp1_rep	mRNA	6633737	6635869	.	+	.	ID=Os11t0226900-01;Name=Os11t0226900-01;Locus_id=Os11g0226900;Note=Hypothetical protein.;Transcript_evidence=AK242662 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090028N21;TENOR=Os11t0226900-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	6633737	6634507	.	+	.	Parent=Os11t0226900-01
Chr11	irgsp1_rep	CDS	6634508	6634771	.	+	0	Parent=Os11t0226900-01
Chr11	irgsp1_rep	three_prime_UTR	6634772	6635869	.	+	.	Parent=Os11t0226900-01
Chr11	irgsp1_rep	mRNA	6638306	6640336	.	-	.	ID=Os11t0226933-01;Name=Os11t0226933-01;Locus_id=Os11g0226933;Note=NB-ARC domain containing protein.;Transcript_evidence=AK242746 (DDBJ%2C Best hit);ORF_evidence=A1Z0K0 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J090050D06;TENOR=Os11t0226933-01;KEGG=Os11t0226933-01
Chr11	irgsp1_rep	five_prime_UTR	6640336	6640336	.	-	.	Parent=Os11t0226933-01
Chr11	irgsp1_rep	CDS	6638398	6640335	.	-	0	Parent=Os11t0226933-01
Chr11	irgsp1_rep	three_prime_UTR	6638306	6638397	.	-	.	Parent=Os11t0226933-01
Chr11	irgsp1_rep	mRNA	6646291	6647404	.	+	.	ID=Os11t0226966-00;Name=Os11t0226966-00;Locus_id=Os11g0226966;Note=Hypothetical conserved gene.;Transcript_evidence=CT835692 (DDBJ%2C Best hit);ORF_evidence=Q2R8J5 (UniProt);TENOR=Os11t0226966-00;KEGG=Os11t0226966-00
Chr11	irgsp1_rep	five_prime_UTR	6646291	6646432	.	+	.	Parent=Os11t0226966-00
Chr11	irgsp1_rep	CDS	6646433	6646451	.	+	0	Parent=Os11t0226966-00
Chr11	irgsp1_rep	CDS	6646561	6646641	.	+	2	Parent=Os11t0226966-00
Chr11	irgsp1_rep	CDS	6646921	6646999	.	+	2	Parent=Os11t0226966-00
Chr11	irgsp1_rep	CDS	6647104	6647140	.	+	1	Parent=Os11t0226966-00
Chr11	irgsp1_rep	three_prime_UTR	6647141	6647404	.	+	.	Parent=Os11t0226966-00
Chr11	irgsp1_rep	mRNA	6649202	6650170	.	+	.	ID=Os11t0227000-01;Name=Os11t0227000-01;Locus_id=Os11g0227000;Note=Conserved hypothetical protein.;Transcript_evidence=AK059194 (DDBJ%2C Best hit);ORF_evidence=Q2R8J4 (UniProt);NIAS_FLcDNA=001-023-H12;Expression=AK059194;TENOR=Os11t0227000-01;KEGG=Os11t0227000-01
Chr11	irgsp1_rep	five_prime_UTR	6649202	6649289	.	+	.	Parent=Os11t0227000-01
Chr11	irgsp1_rep	CDS	6649290	6649308	.	+	0	Parent=Os11t0227000-01
Chr11	irgsp1_rep	CDS	6649450	6649551	.	+	2	Parent=Os11t0227000-01
Chr11	irgsp1_rep	CDS	6649743	6649873	.	+	2	Parent=Os11t0227000-01
Chr11	irgsp1_rep	three_prime_UTR	6649874	6650170	.	+	.	Parent=Os11t0227000-01
Chr11	irgsp1_rep	mRNA	6649910	6650239	.	+	.	ID=Os11t0227000-02;Name=Os11t0227000-02;Locus_id=Os11g0227000;Note=Hypothetical conserved gene.;Transcript_evidence=AK058632 (DDBJ%2C Best hit);ORF_evidence=A3C9W9 (UniProt);NIAS_FLcDNA=001-018-C12;Expression=AK058632;TENOR=Os11t0227000-02;KEGG=Os11t0227000-02
Chr11	irgsp1_rep	five_prime_UTR	6649910	6649925	.	+	.	Parent=Os11t0227000-02
Chr11	irgsp1_rep	CDS	6649926	6650051	.	+	0	Parent=Os11t0227000-02
Chr11	irgsp1_rep	three_prime_UTR	6650052	6650239	.	+	.	Parent=Os11t0227000-02
Chr11	irgsp1_rep	mRNA	6657129	6658984	.	+	.	ID=Os11t0227100-00;Name=Os11t0227100-00;Locus_id=Os11g0227100;Note=Similar to NBS-LRR-like protein.;Transcript_evidence=BT062325 (DDBJ);ORF_evidence=Q8LL84 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);Oryzabase=20189;TENOR=Os11t0227100-00;KEGG=Os11t0227100-00
Chr11	irgsp1_rep	CDS	6657129	6658700	.	+	0	Parent=Os11t0227100-00
Chr11	irgsp1_rep	three_prime_UTR	6658701	6658984	.	+	.	Parent=Os11t0227100-00
Chr11	irgsp1_rep	mRNA	6668507	6680770	.	+	.	ID=Os11t0227200-01;Name=Os11t0227200-01;Locus_id=Os11g0227200;Oryzabase Gene Symbol Synonym(s)=OsLRR;Oryzabase Gene Name Synonym(s)=NBS-LRR disease resistance protein;Note=Similar to NBS-LRR disease resistance protein homologue.;Transcript_evidence=AK065723 (DDBJ%2C Best hit);ORF_evidence=Q9ST23 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013042N23;Oryzabase=12486;Expression=AK065723;TENOR=Os11t0227200-01;KEGG=Os11t0227200-01
Chr11	irgsp1_rep	five_prime_UTR	6668507	6668589	.	+	.	Parent=Os11t0227200-01
Chr11	irgsp1_rep	five_prime_UTR	6671343	6671423	.	+	.	Parent=Os11t0227200-01
Chr11	irgsp1_rep	five_prime_UTR	6677775	6677779	.	+	.	Parent=Os11t0227200-01
Chr11	irgsp1_rep	CDS	6677780	6680518	.	+	0	Parent=Os11t0227200-01
Chr11	irgsp1_rep	three_prime_UTR	6680519	6680770	.	+	.	Parent=Os11t0227200-01
Chr11	irgsp1_rep	mRNA	6679058	6681504	.	-	.	ID=Os11t0227250-01;Name=Os11t0227250-01;Locus_id=Os11g0227250;Note=Hypothetical protein.;Transcript_evidence=AK241556 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065178G11;TENOR=Os11t0227250-01;KEGG=Os11t0227250-01
Chr11	irgsp1_rep	five_prime_UTR	6681275	6681504	.	-	.	Parent=Os11t0227250-01
Chr11	irgsp1_rep	five_prime_UTR	6680527	6681195	.	-	.	Parent=Os11t0227250-01
Chr11	irgsp1_rep	CDS	6680149	6680526	.	-	0	Parent=Os11t0227250-01
Chr11	irgsp1_rep	three_prime_UTR	6679058	6680148	.	-	.	Parent=Os11t0227250-01
Chr11	irgsp1_rep	mRNA	6685665	6687640	.	-	.	ID=Os11t0227300-01;Name=Os11t0227300-01;Locus_id=Os11g0227300;Note=Conserved hypothetical protein.;Transcript_evidence=AK064544 (DDBJ%2C Best hit);ORF_evidence=A2XQF5 (UniProt);NIAS_FLcDNA=002-112-B02;Expression=AK064544;TENOR=Os11t0227300-01;KEGG=Os11t0227300-01
Chr11	irgsp1_rep	five_prime_UTR	6687639	6687640	.	-	.	Parent=Os11t0227300-01
Chr11	irgsp1_rep	CDS	6686769	6687638	.	-	0	Parent=Os11t0227300-01
Chr11	irgsp1_rep	CDS	6686004	6686573	.	-	0	Parent=Os11t0227300-01
Chr11	irgsp1_rep	three_prime_UTR	6685665	6686003	.	-	.	Parent=Os11t0227300-01
Chr11	irgsp1_rep	mRNA	6695391	6698883	.	-	.	ID=Os11t0227600-01;Name=Os11t0227600-01;Locus_id=Os11g0227600;Note=Hypothetical protein.;Transcript_evidence=AK101375 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033036A06;TENOR=Os11t0227600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	6698759	6698883	.	-	.	Parent=Os11t0227600-01
Chr11	irgsp1_rep	five_prime_UTR	6696673	6698286	.	-	.	Parent=Os11t0227600-01
Chr11	irgsp1_rep	five_prime_UTR	6696077	6696366	.	-	.	Parent=Os11t0227600-01
Chr11	irgsp1_rep	five_prime_UTR	6695806	6695963	.	-	.	Parent=Os11t0227600-01
Chr11	irgsp1_rep	CDS	6695391	6695805	.	-	0	Parent=Os11t0227600-01
Chr11	irgsp1_rep	mRNA	6695739	6698860	.	-	.	ID=Os11t0227600-02;Name=Os11t0227600-02;Locus_id=Os11g0227600;Note=Hypothetical protein.;Transcript_evidence=AK102193 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033087C03;Expression=AK102193;TENOR=Os11t0227600-02;KEGG=Os11t0227600-02
Chr11	irgsp1_rep	five_prime_UTR	6698759	6698860	.	-	.	Parent=Os11t0227600-02
Chr11	irgsp1_rep	five_prime_UTR	6698093	6698286	.	-	.	Parent=Os11t0227600-02
Chr11	irgsp1_rep	CDS	6697769	6698092	.	-	0	Parent=Os11t0227600-02
Chr11	irgsp1_rep	three_prime_UTR	6696077	6697768	.	-	.	Parent=Os11t0227600-02
Chr11	irgsp1_rep	three_prime_UTR	6695739	6695963	.	-	.	Parent=Os11t0227600-02
Chr11	irgsp1_rep	mRNA	6692025	6697566	.	+	.	ID=Os11t0227700-01;Name=Os11t0227700-01;Locus_id=Os11g0227700;Note=Similar to Non-TIR-NBS-LRR type resistance protein.;Transcript_evidence=AK288988 (DDBJ%2C Best hit);ORF_evidence=A1Z0K0 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J090086L17;TENOR=Os11t0227700-01;KEGG=Os11t0227700-01
Chr11	irgsp1_rep	five_prime_UTR	6692025	6695476	.	+	.	Parent=Os11t0227700-01
Chr11	irgsp1_rep	CDS	6695477	6697420	.	+	0	Parent=Os11t0227700-01
Chr11	irgsp1_rep	three_prime_UTR	6697421	6697566	.	+	.	Parent=Os11t0227700-01
Chr11	irgsp1_rep	mRNA	6703146	6708873	.	+	.	ID=Os11t0227800-01;Name=Os11t0227800-01;Locus_id=Os11g0227800;Note=NB-ARC domain containing protein.;Transcript_evidence=AK101773 (DDBJ%2C Best hit);ORF_evidence=Q8LL84 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J033064L16;Expression=AK101773;TENOR=Os11t0227800-01;KEGG=Os11t0227800-01
Chr11	irgsp1_rep	five_prime_UTR	6703146	6703333	.	+	.	Parent=Os11t0227800-01
Chr11	irgsp1_rep	five_prime_UTR	6703716	6703795	.	+	.	Parent=Os11t0227800-01
Chr11	irgsp1_rep	five_prime_UTR	6705769	6705778	.	+	.	Parent=Os11t0227800-01
Chr11	irgsp1_rep	CDS	6705779	6708520	.	+	0	Parent=Os11t0227800-01
Chr11	irgsp1_rep	three_prime_UTR	6708521	6708873	.	+	.	Parent=Os11t0227800-01
Chr11	irgsp1_rep	mRNA	6827133	6840671	.	-	.	ID=Os11t0228201-01;Name=Os11t0228201-01;Locus_id=Os11g0228201;Note=Hypothetical gene.;Transcript_evidence=AK289224 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100067O11;TENOR=Os11t0228201-01;KEGG=Os11t0228201-01
Chr11	irgsp1_rep	five_prime_UTR	6838639	6840671	.	-	.	Parent=Os11t0228201-01
Chr11	irgsp1_rep	CDS	6838374	6838638	.	-	0	Parent=Os11t0228201-01
Chr11	irgsp1_rep	CDS	6827985	6828001	.	-	2	Parent=Os11t0228201-01
Chr11	irgsp1_rep	three_prime_UTR	6827921	6827984	.	-	.	Parent=Os11t0228201-01
Chr11	irgsp1_rep	three_prime_UTR	6827133	6827199	.	-	.	Parent=Os11t0228201-01
Chr11	irgsp1_rep	mRNA	6827133	6839374	.	+	.	ID=Os11t0228600-01;Name=Os11t0228600-01;Locus_id=Os11g0228600;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=AK068380 (DDBJ%2C Best hit);ORF_evidence=Q2R8J7 (UniProt);NIAS_FLcDNA=J013146P17;TENOR=Os11t0228600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	6827133	6827199	.	+	.	Parent=Os11t0228600-01
Chr11	irgsp1_rep	five_prime_UTR	6827921	6828001	.	+	.	Parent=Os11t0228600-01
Chr11	irgsp1_rep	five_prime_UTR	6838374	6838378	.	+	.	Parent=Os11t0228600-01
Chr11	irgsp1_rep	CDS	6838379	6838720	.	+	0	Parent=Os11t0228600-01
Chr11	irgsp1_rep	three_prime_UTR	6838721	6839374	.	+	.	Parent=Os11t0228600-01
Chr11	irgsp1_rep	mRNA	6845486	6851812	.	+	.	ID=Os11t0228800-00;Name=Os11t0228800-00;Locus_id=Os11g0228800;Note=Similar to NBS-LRR-like protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8LL84 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);TENOR=Os11t0228800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	6845486	6846514	.	+	0	Parent=Os11t0228800-00
Chr11	irgsp1_rep	CDS	6846711	6846788	.	+	0	Parent=Os11t0228800-00
Chr11	irgsp1_rep	CDS	6847362	6847580	.	+	0	Parent=Os11t0228800-00
Chr11	irgsp1_rep	CDS	6850502	6850586	.	+	0	Parent=Os11t0228800-00
Chr11	irgsp1_rep	CDS	6851697	6851812	.	+	2	Parent=Os11t0228800-00
Chr11	irgsp1_rep	mRNA	6861752	6865502	.	-	.	ID=Os11t0229000-01;Name=Os11t0229000-01;Locus_id=Os11g0229000;Note=Hypothetical conserved gene.;Transcript_evidence=AK102213 (DDBJ%2C Best hit);ORF_evidence=NP_001059784.1 (RefSeq);NIAS_FLcDNA=J033087K03;TENOR=Os11t0229000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	6865084	6865502	.	-	.	Parent=Os11t0229000-01
Chr11	irgsp1_rep	five_prime_UTR	6863817	6863882	.	-	.	Parent=Os11t0229000-01
Chr11	irgsp1_rep	CDS	6863655	6863816	.	-	0	Parent=Os11t0229000-01
Chr11	irgsp1_rep	three_prime_UTR	6861752	6863654	.	-	.	Parent=Os11t0229000-01
Chr11	irgsp1_rep	mRNA	6865808	6867885	.	-	.	ID=Os11t0229100-01;Name=Os11t0229100-01;Locus_id=Os11g0229100;Note=Similar to B0616E02-H0507E05.11 protein.;Transcript_evidence=AK105557 (DDBJ%2C Best hit);ORF_evidence=Q01HW1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: cofactor binding (GO:0048037);InterPro=D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding (IPR006140),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-128-B05;TENOR=Os11t0229100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	6867884	6867885	.	-	.	Parent=Os11t0229100-01
Chr11	irgsp1_rep	CDS	6867464	6867883	.	-	0	Parent=Os11t0229100-01
Chr11	irgsp1_rep	three_prime_UTR	6867222	6867463	.	-	.	Parent=Os11t0229100-01
Chr11	irgsp1_rep	three_prime_UTR	6866732	6867077	.	-	.	Parent=Os11t0229100-01
Chr11	irgsp1_rep	three_prime_UTR	6865808	6866658	.	-	.	Parent=Os11t0229100-01
Chr11	irgsp1_rep	mRNA	6872016	6877424	.	+	.	ID=Os11t0229300-00;Name=Os11t0229300-00;Locus_id=Os11g0229300;Note=Similar to NBS-LRR-like protein.;Transcript_evidence=AK366465 (DDBJ);ORF_evidence=Q8LL84 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os11t0229300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	6872016	6872036	.	+	.	Parent=Os11t0229300-00
Chr11	irgsp1_rep	CDS	6872037	6872452	.	+	0	Parent=Os11t0229300-00
Chr11	irgsp1_rep	CDS	6875879	6877418	.	+	1	Parent=Os11t0229300-00
Chr11	irgsp1_rep	three_prime_UTR	6877419	6877424	.	+	.	Parent=Os11t0229300-00
Chr11	irgsp1_rep	mRNA	6871951	6878271	.	-	.	ID=Os11t0229333-00;Name=Os11t0229333-00;Locus_id=Os11g0229333;Note=Hypothetical gene.;Transcript_evidence=AK101375 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;TENOR=Os11t0229333-00
Chr11	irgsp1_rep	five_prime_UTR	6878240	6878271	.	-	.	Parent=Os11t0229333-00
Chr11	irgsp1_rep	five_prime_UTR	6876167	6877780	.	-	.	Parent=Os11t0229333-00
Chr11	irgsp1_rep	five_prime_UTR	6875745	6875860	.	-	.	Parent=Os11t0229333-00
Chr11	irgsp1_rep	five_prime_UTR	6872910	6873078	.	-	.	Parent=Os11t0229333-00
Chr11	irgsp1_rep	five_prime_UTR	6872639	6872796	.	-	.	Parent=Os11t0229333-00
Chr11	irgsp1_rep	CDS	6872431	6872638	.	-	0	Parent=Os11t0229333-00
Chr11	irgsp1_rep	CDS	6871951	6872157	.	-	2	Parent=Os11t0229333-00
Chr11	irgsp1_rep	mRNA	6878726	6884768	.	+	.	ID=Os11t0229400-01;Name=Os11t0229400-01;Locus_id=Os11g0229400;Note=Similar to NBS-LRR protein (Fragment).;Transcript_evidence=AK241109 (DDBJ%2C Best hit);ORF_evidence=Q9ST23 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J065090F12;TENOR=Os11t0229400-01;KEGG=Os11t0229400-01
Chr11	irgsp1_rep	five_prime_UTR	6878726	6878821	.	+	.	Parent=Os11t0229400-01
Chr11	irgsp1_rep	five_prime_UTR	6879277	6879350	.	+	.	Parent=Os11t0229400-01
Chr11	irgsp1_rep	five_prime_UTR	6881844	6881848	.	+	.	Parent=Os11t0229400-01
Chr11	irgsp1_rep	CDS	6881849	6884566	.	+	0	Parent=Os11t0229400-01
Chr11	irgsp1_rep	three_prime_UTR	6884567	6884768	.	+	.	Parent=Os11t0229400-01
Chr11	irgsp1_rep	mRNA	6888365	6896307	.	+	.	ID=Os11t0229500-01;Name=Os11t0229500-01;Locus_id=Os11g0229500;CGSNL Gene Symbol=RPR1;CGSNL Gene Name=RICE PROBENAZOL RESPONSIBLE 1;Oryzabase Gene Symbol Synonym(s)=RPR1*%2C Rpr1-1%2C Rpr1%2C RPM1%2C OsRPM1;Oryzabase Gene Name Synonym(s)=rice probenazol responsible 1;Note=Similar to NBS-LRR protein (Fragment).;Transcript_evidence=AK111665 (DDBJ%2C Best hit);ORF_evidence=Q9ST23 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013157J04;Oryzabase=2082;Expression=AK111665;TENOR=Os11t0229500-01;KEGG=Os11t0229500-01
Chr11	irgsp1_rep	five_prime_UTR	6888365	6888425	.	+	.	Parent=Os11t0229500-01
Chr11	irgsp1_rep	five_prime_UTR	6893301	6893305	.	+	.	Parent=Os11t0229500-01
Chr11	irgsp1_rep	CDS	6893306	6896011	.	+	0	Parent=Os11t0229500-01
Chr11	irgsp1_rep	three_prime_UTR	6896012	6896307	.	+	.	Parent=Os11t0229500-01
Chr11	irgsp1_rep	mRNA	6894105	6897208	.	-	.	ID=Os11t0229600-01;Name=Os11t0229600-01;Locus_id=Os11g0229600;Note=Hypothetical gene.;Transcript_evidence=AK107455 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-128-C09;Expression=AK107455;TENOR=Os11t0229600-01;KEGG=Os11t0229600-01
Chr11	irgsp1_rep	five_prime_UTR	6897207	6897208	.	-	.	Parent=Os11t0229600-01
Chr11	irgsp1_rep	CDS	6897015	6897206	.	-	0	Parent=Os11t0229600-01
Chr11	irgsp1_rep	CDS	6895850	6895924	.	-	0	Parent=Os11t0229600-01
Chr11	irgsp1_rep	three_prime_UTR	6894754	6895849	.	-	.	Parent=Os11t0229600-01
Chr11	irgsp1_rep	three_prime_UTR	6894537	6894674	.	-	.	Parent=Os11t0229600-01
Chr11	irgsp1_rep	three_prime_UTR	6894105	6894447	.	-	.	Parent=Os11t0229600-01
Chr11	irgsp1_rep	mRNA	6891118	6897206	.	-	.	ID=Os11t0229600-02;Name=Os11t0229600-02;Locus_id=Os11g0229600;Note=Hypothetical protein.;Transcript_evidence=AK111854 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033009C22;Expression=AK111854;TENOR=Os11t0229600-02;KEGG=Os11t0229600-02
Chr11	irgsp1_rep	five_prime_UTR	6897015	6897206	.	-	.	Parent=Os11t0229600-02
Chr11	irgsp1_rep	five_prime_UTR	6894897	6895924	.	-	.	Parent=Os11t0229600-02
Chr11	irgsp1_rep	five_prime_UTR	6894754	6894818	.	-	.	Parent=Os11t0229600-02
Chr11	irgsp1_rep	five_prime_UTR	6894537	6894674	.	-	.	Parent=Os11t0229600-02
Chr11	irgsp1_rep	five_prime_UTR	6894177	6894447	.	-	.	Parent=Os11t0229600-02
Chr11	irgsp1_rep	CDS	6894158	6894176	.	-	0	Parent=Os11t0229600-02
Chr11	irgsp1_rep	CDS	6893734	6894035	.	-	2	Parent=Os11t0229600-02
Chr11	irgsp1_rep	three_prime_UTR	6891118	6893733	.	-	.	Parent=Os11t0229600-02
Chr11	irgsp1_rep	mRNA	6897656	6898840	.	+	.	ID=Os11t0229700-00;Name=Os11t0229700-00;Locus_id=Os11g0229700;Note=Similar to NBS-LRR-like protein.;Transcript_evidence=BT062325 (DDBJ);ORF_evidence=Q8LL84 (UniProt);TENOR=Os11t0229700-00;KEGG=Os11t0229700-00
Chr11	irgsp1_rep	five_prime_UTR	6897656	6897736	.	+	.	Parent=Os11t0229700-00
Chr11	irgsp1_rep	CDS	6897737	6898597	.	+	0	Parent=Os11t0229700-00
Chr11	irgsp1_rep	three_prime_UTR	6898598	6898840	.	+	.	Parent=Os11t0229700-00
Chr11	irgsp1_rep	mRNA	6925637	6927149	.	+	.	ID=Os11t0230400-00;Name=Os11t0230400-00;Locus_id=Os11g0230400;Oryzabase Gene Symbol Synonym(s)=OsSRP-GAA%2C OrysaZ6a;Oryzabase Gene Name Synonym(s)=serpin-Z6A;Note=Protease inhibitor I4%2C serpin domain containing protein.;Transcript_evidence=FP098849 (DDBJ);ORF_evidence=Q53Q31 (UniProt);GO=Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Protease inhibitor I4%2C serpin (IPR000215),Protease inhibitor I4%2C serpin%2C plant (IPR015554),Serpin domain (IPR023796);Oryzabase=11588;TENOR=Os11t0230400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	6925637	6926242	.	+	0	Parent=Os11t0230400-00
Chr11	irgsp1_rep	CDS	6926334	6927149	.	+	0	Parent=Os11t0230400-00
Chr11	irgsp1_rep	mRNA	6940718	6942007	.	+	.	ID=Os11t0230700-00;Name=Os11t0230700-00;Locus_id=Os11g0230700;Oryzabase Gene Symbol Synonym(s)=OsSRP-GRA%2C OrysaZ6b;Oryzabase Gene Name Synonym(s)=Serpin-Z6B;Note=Serpin-Z6B.;Transcript_evidence=Q53Q32 (UniProt);ORF_evidence=Q53Q32 (UniProt);GO=Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Protease inhibitor I4%2C serpin (IPR000215),Protease inhibitor I4%2C serpin%2C plant (IPR015554),Serpin domain (IPR023796);Oryzabase=11589;TENOR=Os11t0230700-00
Chr11	irgsp1_rep	CDS	6940718	6941083	.	+	0	Parent=Os11t0230700-00
Chr11	irgsp1_rep	CDS	6941177	6942007	.	+	0	Parent=Os11t0230700-00
Chr11	irgsp1_rep	mRNA	6963249	6964564	.	+	.	ID=Os11t0231200-00;Name=Os11t0231200-00;Locus_id=Os11g0231200;Oryzabase Gene Symbol Synonym(s)=OsSRP-FAS%2C OrysaZ6c;Oryzabase Gene Name Synonym(s)=serpin-Z6C;Note=Putative serpin-Z6C.;Transcript_evidence=EU972227 (DDBJ);ORF_evidence=Q53MD1 (UniProt);GO=Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Protease inhibitor I4%2C serpin (IPR000215),Protease inhibitor I4%2C serpin%2C plant (IPR015554),Serpin domain (IPR023796);Oryzabase=11583;TENOR=Os11t0231200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	6963249	6963671	.	+	0	Parent=Os11t0231200-00
Chr11	irgsp1_rep	CDS	6963739	6964563	.	+	0	Parent=Os11t0231200-00
Chr11	irgsp1_rep	three_prime_UTR	6964564	6964564	.	+	.	Parent=Os11t0231200-00
Chr11	irgsp1_rep	mRNA	6968635	6970984	.	-	.	ID=Os11t0231400-01;Name=Os11t0231400-01;Locus_id=Os11g0231400;Note=Protein of unknown function DUF295 family protein.;Transcript_evidence=AK108047 (DDBJ%2C Best hit);ORF_evidence=Q10SR6 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174);NIAS_FLcDNA=002-137-F05;Expression=AK108047;TENOR=Os11t0231400-01;KEGG=Os11t0231400-01
Chr11	irgsp1_rep	five_prime_UTR	6970954	6970984	.	-	.	Parent=Os11t0231400-01
Chr11	irgsp1_rep	five_prime_UTR	6970754	6970866	.	-	.	Parent=Os11t0231400-01
Chr11	irgsp1_rep	CDS	6970661	6970753	.	-	0	Parent=Os11t0231400-01
Chr11	irgsp1_rep	CDS	6969651	6970603	.	-	0	Parent=Os11t0231400-01
Chr11	irgsp1_rep	CDS	6969249	6969315	.	-	1	Parent=Os11t0231400-01
Chr11	irgsp1_rep	CDS	6968828	6968833	.	-	0	Parent=Os11t0231400-01
Chr11	irgsp1_rep	three_prime_UTR	6968635	6968827	.	-	.	Parent=Os11t0231400-01
Chr11	irgsp1_rep	mRNA	6975139	6977372	.	+	.	ID=Os11t0231600-01;Name=Os11t0231600-01;Locus_id=Os11g0231600;Oryzabase Gene Symbol Synonym(s)=OsFbox595%2C Os_F0194;Oryzabase Gene Name Synonym(s)=F-box protein 595;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK121872 (DDBJ%2C Best hit);ORF_evidence=Q53LE0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033104C13;Oryzabase=17359;Expression=AK121872;TENOR=Os11t0231600-01;KEGG=Os11t0231600-01
Chr11	irgsp1_rep	five_prime_UTR	6975139	6975406	.	+	.	Parent=Os11t0231600-01
Chr11	irgsp1_rep	CDS	6975407	6976309	.	+	0	Parent=Os11t0231600-01
Chr11	irgsp1_rep	CDS	6976739	6976894	.	+	0	Parent=Os11t0231600-01
Chr11	irgsp1_rep	CDS	6976976	6977218	.	+	0	Parent=Os11t0231600-01
Chr11	irgsp1_rep	three_prime_UTR	6977219	6977372	.	+	.	Parent=Os11t0231600-01
Chr11	irgsp1_rep	mRNA	6980647	6981198	.	+	.	ID=Os11t0231800-00;Name=Os11t0231800-00;Locus_id=Os11g0231800;Note=Similar to Serpin (Serine protease inhibitor).;Transcript_evidence=ab initio prediction;ORF_evidence=Q53P13 (UniProt);GO=Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Protease inhibitor I4%2C serpin (IPR000215),Protease inhibitor I4%2C serpin%2C plant (IPR015554),Serpin domain (IPR023796);TENOR=Os11t0231800-00
Chr11	irgsp1_rep	CDS	6980647	6981198	.	+	0	Parent=Os11t0231800-00
Chr11	irgsp1_rep	mRNA	7005794	7007235	.	+	.	ID=Os11t0232000-00;Name=Os11t0232000-00;Locus_id=Os11g0232000;Oryzabase Gene Symbol Synonym(s)=OsSRP-GMS%2C OrysaZ5;Oryzabase Gene Name Synonym(s)=serpin-Z5;Note=Putative serpin-Z5.;Transcript_evidence=Q53MD3 (UniProt);ORF_evidence=Q53MD3 (UniProt);GO=Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Protease inhibitor I4%2C serpin (IPR000215),Protease inhibitor I4%2C serpin%2C plant (IPR015554),Serpin domain (IPR023796);Oryzabase=11586;TENOR=Os11t0232000-00
Chr11	irgsp1_rep	CDS	7005794	7006195	.	+	0	Parent=Os11t0232000-00
Chr11	irgsp1_rep	CDS	7006300	7007235	.	+	0	Parent=Os11t0232000-00
Chr11	irgsp1_rep	mRNA	7011654	7018706	.	-	.	ID=Os11t0232100-01;Name=Os11t0232100-01;Locus_id=Os11g0232100;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK111558 (DDBJ%2C Best hit);ORF_evidence=A2ZCV8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013054D24;Expression=AK111558;TENOR=Os11t0232100-01;KEGG=Os11t0232100-01
Chr11	irgsp1_rep	five_prime_UTR	7018433	7018706	.	-	.	Parent=Os11t0232100-01
Chr11	irgsp1_rep	five_prime_UTR	7014877	7014960	.	-	.	Parent=Os11t0232100-01
Chr11	irgsp1_rep	CDS	7012326	7014876	.	-	0	Parent=Os11t0232100-01
Chr11	irgsp1_rep	CDS	7011824	7012236	.	-	2	Parent=Os11t0232100-01
Chr11	irgsp1_rep	three_prime_UTR	7011654	7011823	.	-	.	Parent=Os11t0232100-01
Chr11	irgsp1_rep	mRNA	7011573	7014288	.	-	.	ID=Os11t0232100-02;Name=Os11t0232100-02;Locus_id=Os11g0232100;Note=Hypothetical conserved gene.;Transcript_evidence=AK105669 (DDBJ%2C Best hit);ORF_evidence=A3C9Z5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-201-A03;Expression=AK105669;TENOR=Os11t0232100-02;KEGG=Os11t0232100-02 (EC:2.7.11.1)
Chr11	irgsp1_rep	CDS	7012326	7014288	.	-	0	Parent=Os11t0232100-02
Chr11	irgsp1_rep	CDS	7011824	7012236	.	-	2	Parent=Os11t0232100-02
Chr11	irgsp1_rep	three_prime_UTR	7011573	7011823	.	-	.	Parent=Os11t0232100-02
Chr11	irgsp1_rep	mRNA	7012258	7014813	.	+	.	ID=Os11t0232400-00;Name=Os11t0232400-00;Locus_id=Os11g0232400;Note=Conserved hypothetical protein.;Transcript_evidence=EU944356 (DDBJ);ORF_evidence=NP_001145754.1 (RefSeq);TENOR=Os11t0232400-00
Chr11	irgsp1_rep	CDS	7012258	7014813	.	+	0	Parent=Os11t0232400-00
Chr11	irgsp1_rep	mRNA	7056514	7058106	.	-	.	ID=Os11t0233000-00;Name=Os11t0233000-00;Locus_id=Os11g0233000;Note=Similar to Leucine Rich Repeat family protein.;Transcript_evidence=AK356413 (DDBJ);ORF_evidence=Q53MD9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);TENOR=Os11t0233000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	7056514	7058106	.	-	0	Parent=Os11t0233000-00
Chr11	irgsp1_rep	mRNA	7061188	7065785	.	-	.	ID=Os11t0233201-01;Name=Os11t0233201-01;Locus_id=Os11g0233201;Note=Hypothetical gene.;Transcript_evidence=AK288405 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090030E11;TENOR=Os11t0233201-01;KEGG=Os11t0233201-01
Chr11	irgsp1_rep	five_prime_UTR	7063084	7065785	.	-	.	Parent=Os11t0233201-01
Chr11	irgsp1_rep	CDS	7062574	7063083	.	-	0	Parent=Os11t0233201-01
Chr11	irgsp1_rep	three_prime_UTR	7061188	7062573	.	-	.	Parent=Os11t0233201-01
Chr11	irgsp1_rep	mRNA	7074209	7075938	.	-	.	ID=Os11t0233400-01;Name=Os11t0233400-01;Locus_id=Os11g0233400;Note=Similar to cDNA clone:J033099F01%2C full insert sequence.;Transcript_evidence=AK061190 (DDBJ%2C Best hit),AK105893 (DDBJ%2C Best hit);ORF_evidence=B7ETE2 (UniProt);NIAS_FLcDNA=006-209-F06,001-204-E10;TENOR=Os11t0233400-01
Chr11	irgsp1_rep	five_prime_UTR	7075595	7075938	.	-	.	Parent=Os11t0233400-01
Chr11	irgsp1_rep	CDS	7075347	7075594	.	-	0	Parent=Os11t0233400-01
Chr11	irgsp1_rep	CDS	7075160	7075217	.	-	1	Parent=Os11t0233400-01
Chr11	irgsp1_rep	CDS	7074957	7075075	.	-	0	Parent=Os11t0233400-01
Chr11	irgsp1_rep	CDS	7074445	7074475	.	-	1	Parent=Os11t0233400-01
Chr11	irgsp1_rep	three_prime_UTR	7074209	7074444	.	-	.	Parent=Os11t0233400-01
Chr11	irgsp1_rep	mRNA	7104264	7110745	.	+	.	ID=Os11t0233800-01;Name=Os11t0233800-01;Locus_id=Os11g0233800;CGSNL Gene Symbol=RLCK320;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 320;Oryzabase Gene Symbol Synonym(s)=OsRLCK320;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 320;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK243563 (DDBJ%2C Best hit);ORF_evidence=Q53ME4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J100080K24;Oryzabase=18991;TENOR=Os11t0233800-01;KEGG=Os11t0233800-01
Chr11	irgsp1_rep	five_prime_UTR	7104264	7104334	.	+	.	Parent=Os11t0233800-01
Chr11	irgsp1_rep	CDS	7104335	7107098	.	+	0	Parent=Os11t0233800-01
Chr11	irgsp1_rep	CDS	7109399	7109820	.	+	2	Parent=Os11t0233800-01
Chr11	irgsp1_rep	three_prime_UTR	7109821	7110745	.	+	.	Parent=Os11t0233800-01
Chr11	irgsp1_rep	mRNA	7114429	7115003	.	+	.	ID=Os11t0234001-01;Name=Os11t0234001-01;Locus_id=Os11g0234001;Note=Conserved hypothetical protein.;Transcript_evidence=AK241056 (DDBJ%2C Best hit);ORF_evidence=Q53KE6 (UniProt);NIAS_FLcDNA=J065063O08;TENOR=Os11t0234001-01;KEGG=Os11t0234001-01
Chr11	irgsp1_rep	five_prime_UTR	7114429	7114429	.	+	.	Parent=Os11t0234001-01
Chr11	irgsp1_rep	CDS	7114430	7114685	.	+	0	Parent=Os11t0234001-01
Chr11	irgsp1_rep	CDS	7114802	7114833	.	+	2	Parent=Os11t0234001-01
Chr11	irgsp1_rep	three_prime_UTR	7114834	7115003	.	+	.	Parent=Os11t0234001-01
Chr11	irgsp1_rep	mRNA	7121653	7124770	.	+	.	ID=Os11t0234100-01;Name=Os11t0234100-01;Locus_id=Os11g0234100;Note=Non-protein coding transcript.;Transcript_evidence=AK120381 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013072P11;TENOR=Os11t0234100-01
Chr11	irgsp1_rep	exon	7121653	7121783	.	+	.	Parent=Os11t0234100-01
Chr11	irgsp1_rep	exon	7123798	7123863	.	+	.	Parent=Os11t0234100-01
Chr11	irgsp1_rep	exon	7124521	7124770	.	+	.	Parent=Os11t0234100-01
Chr11	irgsp1_rep	mRNA	7125124	7128857	.	-	.	ID=Os11t0234200-01;Name=Os11t0234200-01;Locus_id=Os11g0234200;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK105440 (DDBJ%2C Best hit);ORF_evidence=A3CA04 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-finger (IPR019787);NIAS_FLcDNA=001-124-H10;Expression=AK105440;TENOR=Os11t0234200-01;KEGG=Os11t0234200-01
Chr11	irgsp1_rep	five_prime_UTR	7128810	7128857	.	-	.	Parent=Os11t0234200-01
Chr11	irgsp1_rep	CDS	7128419	7128809	.	-	0	Parent=Os11t0234200-01
Chr11	irgsp1_rep	CDS	7127224	7127344	.	-	2	Parent=Os11t0234200-01
Chr11	irgsp1_rep	CDS	7126876	7127094	.	-	1	Parent=Os11t0234200-01
Chr11	irgsp1_rep	CDS	7126166	7126753	.	-	1	Parent=Os11t0234200-01
Chr11	irgsp1_rep	CDS	7125251	7126079	.	-	1	Parent=Os11t0234200-01
Chr11	irgsp1_rep	three_prime_UTR	7125124	7125250	.	-	.	Parent=Os11t0234200-01
Chr11	irgsp1_rep	mRNA	7125494	7127467	.	+	.	ID=Os11t0234300-01;Name=Os11t0234300-01;Locus_id=Os11g0234300;Note=Non-protein coding transcript.;Transcript_evidence=AK108764 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-150-G10;TENOR=Os11t0234300-01
Chr11	irgsp1_rep	exon	7125494	7127127	.	+	.	Parent=Os11t0234300-01
Chr11	irgsp1_rep	exon	7127238	7127467	.	+	.	Parent=Os11t0234300-01
Chr11	irgsp1_rep	mRNA	7193230	7198486	.	-	.	ID=Os11t0235200-01;Name=Os11t0235200-01;Locus_id=Os11g0235200;RAP-DB Gene Symbol Synonym(s)=SP1%2C sp%2C SP;RAP-DB Gene Name Synonym(s)=SHORT PANICLE 1%2C short panicle%2C SHORT PANICLE%2C short panicle1;CGSNL Gene Symbol=SP1;CGSNL Gene Name=SHORT PANICLE 1;Oryzabase Gene Symbol Synonym(s)=sp%2C SP%2C OsNPF4.1%2C NPF4.1%2C OsSP1;Oryzabase Gene Name Synonym(s)=short panicle%2C SHORT PANICLE%2C short panicle1%2C NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 4.1;Note=Peptide transporter (PTR) family transporter%2C Proton oligopeptide tansporter (POT)%2C Panicle elongation;Transcript_evidence=AK100802 (Genbank);ORF_evidence=Q53JI5 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J023121K14;Manual Curation=June 23%2C 2009;Literature_PMID=19154200;Oryzabase=928;TENOR=Os11t0235200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	7198310	7198486	.	-	.	Parent=Os11t0235200-01
Chr11	irgsp1_rep	CDS	7198177	7198309	.	-	0	Parent=Os11t0235200-01
Chr11	irgsp1_rep	CDS	7197831	7198048	.	-	2	Parent=Os11t0235200-01
Chr11	irgsp1_rep	CDS	7196773	7197252	.	-	0	Parent=Os11t0235200-01
Chr11	irgsp1_rep	CDS	7194913	7195037	.	-	0	Parent=Os11t0235200-01
Chr11	irgsp1_rep	CDS	7193680	7194604	.	-	1	Parent=Os11t0235200-01
Chr11	irgsp1_rep	three_prime_UTR	7193230	7193679	.	-	.	Parent=Os11t0235200-01
Chr11	irgsp1_rep	mRNA	7196789	7197296	.	+	.	ID=Os11t0235250-00;Name=Os11t0235250-00;Locus_id=Os11g0235250;Note=Hypothetical gene.;Transcript_evidence=EU946357 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0235250-00
Chr11	irgsp1_rep	five_prime_UTR	7196789	7196790	.	+	.	Parent=Os11t0235250-00
Chr11	irgsp1_rep	CDS	7196791	7197296	.	+	0	Parent=Os11t0235250-00
Chr11	irgsp1_rep	mRNA	7202765	7205523	.	-	.	ID=Os11t0235300-01;Name=Os11t0235300-01;Locus_id=Os11g0235300;Note=Hypothetical gene.;Transcript_evidence=AK065527 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013032P14;Expression=AK065527;TENOR=Os11t0235300-01;KEGG=Os11t0235300-01
Chr11	irgsp1_rep	five_prime_UTR	7203029	7205523	.	-	.	Parent=Os11t0235300-01
Chr11	irgsp1_rep	CDS	7202765	7203028	.	-	0	Parent=Os11t0235300-01
Chr11	irgsp1_rep	mRNA	7212407	7214557	.	-	.	ID=Os11t0235400-00;Name=Os11t0235400-00;Locus_id=Os11g0235400;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os11t0235400-00;KEGG=Os11t0235400-00
Chr11	irgsp1_rep	CDS	7214422	7214557	.	-	0	Parent=Os11t0235400-00
Chr11	irgsp1_rep	CDS	7212407	7212603	.	-	2	Parent=Os11t0235400-00
Chr11	irgsp1_rep	mRNA	7221675	7228567	.	+	.	ID=Os11t0235700-00;Name=Os11t0235700-00;Locus_id=Os11g0235700;Note=Similar to FHY1.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001176447.1 (RefSeq);TENOR=Os11t0235700-00;KEGG=Os11t0235700-00
Chr11	irgsp1_rep	CDS	7221675	7221704	.	+	0	Parent=Os11t0235700-00
Chr11	irgsp1_rep	CDS	7222836	7222955	.	+	0	Parent=Os11t0235700-00
Chr11	irgsp1_rep	CDS	7228343	7228567	.	+	0	Parent=Os11t0235700-00
Chr11	irgsp1_rep	mRNA	7229429	7230051	.	-	.	ID=Os11t0235750-00;Name=Os11t0235750-00;Locus_id=Os11g0235750;Note=Similar to H0105C05.7 protein.;Transcript_evidence=tplb0019f15 (Wheat FLcDNA);ORF_evidence=Q25A17 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 16 (IPR000757),Concanavalin A-like lectin/glucanase (IPR008985),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320);TENOR=Os11t0235750-00;KEGG=Os11t0235750-00
Chr11	irgsp1_rep	CDS	7229626	7230051	.	-	0	Parent=Os11t0235750-00
Chr11	irgsp1_rep	three_prime_UTR	7229429	7229625	.	-	.	Parent=Os11t0235750-00
Chr11	irgsp1_rep	mRNA	7250435	7254536	.	-	.	ID=Os11t0236000-01;Name=Os11t0236000-01;Locus_id=Os11g0236000;Note=Similar to Glycerophosphodiester phosphodiesterase.;Transcript_evidence=AK242700 (DDBJ%2C Best hit);ORF_evidence=B6TFI8 (UniProt);GO=Biological Process: glycerol metabolic process (GO:0006071),Biological Process: lipid metabolic process (GO:0006629),Molecular Function: phosphoric diester hydrolase activity (GO:0008081),Molecular Function: glycerophosphodiester phosphodiesterase activity (GO:0008889);InterPro=Glycerophosphoryl diester phosphodiesterase (IPR004129),PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain (IPR017946);NIAS_FLcDNA=J090038N04;TENOR=Os11t0236000-01;KEGG=Os11t0236000-01
Chr11	irgsp1_rep	five_prime_UTR	7254504	7254536	.	-	.	Parent=Os11t0236000-01
Chr11	irgsp1_rep	CDS	7254270	7254503	.	-	0	Parent=Os11t0236000-01
Chr11	irgsp1_rep	CDS	7254072	7254158	.	-	0	Parent=Os11t0236000-01
Chr11	irgsp1_rep	CDS	7253846	7253947	.	-	0	Parent=Os11t0236000-01
Chr11	irgsp1_rep	three_prime_UTR	7252817	7253845	.	-	.	Parent=Os11t0236000-01
Chr11	irgsp1_rep	three_prime_UTR	7252489	7252569	.	-	.	Parent=Os11t0236000-01
Chr11	irgsp1_rep	three_prime_UTR	7252216	7252308	.	-	.	Parent=Os11t0236000-01
Chr11	irgsp1_rep	three_prime_UTR	7251303	7251392	.	-	.	Parent=Os11t0236000-01
Chr11	irgsp1_rep	three_prime_UTR	7250435	7251196	.	-	.	Parent=Os11t0236000-01
Chr11	irgsp1_rep	mRNA	7255817	7258556	.	-	.	ID=Os11t0236100-01;Name=Os11t0236100-01;Locus_id=Os11g0236100;CGSNL Gene Symbol=SPS11;CGSNL Gene Name=SUCROSE PHOSPHATE SYNTHASE 11;Oryzabase Gene Symbol Synonym(s)=sps11%2C OsSPS11%2C OsSPS5%2C SPS5;Oryzabase Gene Name Synonym(s)=sucrose phosphate synthase 11;Note=Similar to Sucrose-phosphate synthase.;Transcript_evidence=AK242834 (DDBJ%2C Best hit);ORF_evidence=Q6EZE8 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058);InterPro=Glycosyl transferase%2C family 1 (IPR001296),Sucrose-phosphate synthase (IPR006380);NIAS_FLcDNA=J090067P14;Oryzabase=11203;TENOR=Os11t0236100-01;KEGG=Os11t0236100-01
Chr11	irgsp1_rep	five_prime_UTR	7258556	7258556	.	-	.	Parent=Os11t0236100-01
Chr11	irgsp1_rep	CDS	7258448	7258555	.	-	0	Parent=Os11t0236100-01
Chr11	irgsp1_rep	CDS	7258291	7258344	.	-	0	Parent=Os11t0236100-01
Chr11	irgsp1_rep	CDS	7256673	7257641	.	-	0	Parent=Os11t0236100-01
Chr11	irgsp1_rep	CDS	7256455	7256582	.	-	0	Parent=Os11t0236100-01
Chr11	irgsp1_rep	CDS	7256104	7256374	.	-	1	Parent=Os11t0236100-01
Chr11	irgsp1_rep	three_prime_UTR	7255817	7256103	.	-	.	Parent=Os11t0236100-01
Chr11	irgsp1_rep	mRNA	7261709	7262674	.	-	.	ID=Os11t0236200-00;Name=Os11t0236200-00;Locus_id=Os11g0236200;Note=Similar to Sucrose-phosphate synthase.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6EZE8 (UniProt);TENOR=Os11t0236200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	7262594	7262674	.	-	0	Parent=Os11t0236200-00
Chr11	irgsp1_rep	CDS	7261709	7262299	.	-	0	Parent=Os11t0236200-00
Chr11	irgsp1_rep	mRNA	7327021	7327544	.	-	.	ID=Os11t0236932-01;Name=Os11t0236932-01;Locus_id=Os11g0236932;Note=Hypothetical conserved gene.;Transcript_evidence=AK289236 (DDBJ%2C Best hit);ORF_evidence=B9GE38 (UniProt);NIAS_FLcDNA=J100074F11;TENOR=Os11t0236932-01;KEGG=Os11t0236932-01
Chr11	irgsp1_rep	five_prime_UTR	7327471	7327544	.	-	.	Parent=Os11t0236932-01
Chr11	irgsp1_rep	CDS	7327270	7327470	.	-	0	Parent=Os11t0236932-01
Chr11	irgsp1_rep	three_prime_UTR	7327021	7327269	.	-	.	Parent=Os11t0236932-01
Chr11	irgsp1_rep	mRNA	7331985	7332623	.	-	.	ID=Os11t0237300-00;Name=Os11t0237300-00;Locus_id=Os11g0237300;Note=Hypothetical conserved gene.;Transcript_evidence=CT835651 (DDBJ%2C Best hit);ORF_evidence=Q53KR4 (UniProt);TENOR=Os11t0237300-00;KEGG=Os11t0237300-00
Chr11	irgsp1_rep	five_prime_UTR	7332542	7332623	.	-	.	Parent=Os11t0237300-00
Chr11	irgsp1_rep	CDS	7332320	7332541	.	-	0	Parent=Os11t0237300-00
Chr11	irgsp1_rep	three_prime_UTR	7331985	7332319	.	-	.	Parent=Os11t0237300-00
Chr11	irgsp1_rep	mRNA	7342094	7345975	.	+	.	ID=Os11t0237600-01;Name=Os11t0237600-01;Locus_id=Os11g0237600;Note=Hypothetical conserved gene.;Transcript_evidence=AK242269 (DDBJ%2C Best hit);ORF_evidence=B8BGY3 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J075186H09;TENOR=Os11t0237600-01;KEGG=Os11t0237600-01
Chr11	irgsp1_rep	five_prime_UTR	7342094	7342101	.	+	.	Parent=Os11t0237600-01
Chr11	irgsp1_rep	CDS	7342102	7342985	.	+	0	Parent=Os11t0237600-01
Chr11	irgsp1_rep	CDS	7343302	7345282	.	+	1	Parent=Os11t0237600-01
Chr11	irgsp1_rep	CDS	7345377	7345438	.	+	0	Parent=Os11t0237600-01
Chr11	irgsp1_rep	CDS	7345632	7345704	.	+	1	Parent=Os11t0237600-01
Chr11	irgsp1_rep	three_prime_UTR	7345705	7345975	.	+	.	Parent=Os11t0237600-01
Chr11	irgsp1_rep	mRNA	7346265	7348818	.	-	.	ID=Os11t0237700-01;Name=Os11t0237700-01;Locus_id=Os11g0237700;Note=Similar to URF 4-related.;Transcript_evidence=AK243407 (DDBJ%2C Best hit);ORF_evidence=NP_566463.1 (RefSeq);GO=Biological Process: RNA processing (GO:0006396),Molecular Function: RNA binding (GO:0003723),Molecular Function: ribonuclease III activity (GO:0004525);InterPro=Ribonuclease III (IPR000999);NIAS_FLcDNA=J100065I12;TENOR=Os11t0237700-01;KEGG=Os11t0237700-01
Chr11	irgsp1_rep	five_prime_UTR	7348799	7348818	.	-	.	Parent=Os11t0237700-01
Chr11	irgsp1_rep	CDS	7348546	7348798	.	-	0	Parent=Os11t0237700-01
Chr11	irgsp1_rep	CDS	7348111	7348235	.	-	2	Parent=Os11t0237700-01
Chr11	irgsp1_rep	CDS	7347809	7347898	.	-	0	Parent=Os11t0237700-01
Chr11	irgsp1_rep	CDS	7347505	7347557	.	-	0	Parent=Os11t0237700-01
Chr11	irgsp1_rep	CDS	7347104	7347206	.	-	1	Parent=Os11t0237700-01
Chr11	irgsp1_rep	CDS	7346844	7346959	.	-	0	Parent=Os11t0237700-01
Chr11	irgsp1_rep	CDS	7346720	7346771	.	-	1	Parent=Os11t0237700-01
Chr11	irgsp1_rep	three_prime_UTR	7346265	7346719	.	-	.	Parent=Os11t0237700-01
Chr11	irgsp1_rep	mRNA	7356166	7359604	.	+	.	ID=Os11t0237900-00;Name=Os11t0237900-00;Locus_id=Os11g0237900;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=AK336061 (DDBJ);ORF_evidence=Q53KR9 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os11t0237900-00;KEGG=Os11t0237900-00
Chr11	irgsp1_rep	CDS	7356166	7357004	.	+	0	Parent=Os11t0237900-00
Chr11	irgsp1_rep	CDS	7357654	7359604	.	+	1	Parent=Os11t0237900-00
Chr11	irgsp1_rep	mRNA	7365098	7367861	.	+	.	ID=Os11t0238000-00;Name=Os11t0238000-00;Locus_id=Os11g0238000;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=AK336061 (DDBJ);ORF_evidence=Q53KR9 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os11t0238000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	7365098	7365936	.	+	0	Parent=Os11t0238000-00
Chr11	irgsp1_rep	CDS	7366544	7367861	.	+	1	Parent=Os11t0238000-00
Chr11	irgsp1_rep	mRNA	7391747	7392448	.	-	.	ID=Os11t0238400-01;Name=Os11t0238400-01;Locus_id=Os11g0238400;Note=Protein of unknown function DUF3475 domain containing protein.;Transcript_evidence=AK105203 (DDBJ%2C Best hit);ORF_evidence=Q53KS4 (UniProt);InterPro=Protein of unknown function DUF3475 (IPR021864);NIAS_FLcDNA=001-108-E01;Expression=AK105203;TENOR=Os11t0238400-01;KEGG=Os11t0238400-01
Chr11	irgsp1_rep	five_prime_UTR	7392448	7392448	.	-	.	Parent=Os11t0238400-01
Chr11	irgsp1_rep	CDS	7392019	7392447	.	-	0	Parent=Os11t0238400-01
Chr11	irgsp1_rep	three_prime_UTR	7391747	7392018	.	-	.	Parent=Os11t0238400-01
Chr11	irgsp1_rep	mRNA	7406417	7408213	.	+	.	ID=Os11t0238700-00;Name=Os11t0238700-00;Locus_id=Os11g0238700;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=EU942727 (DDBJ);ORF_evidence=Q53KS6 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os11t0238700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	7406417	7408213	.	+	0	Parent=Os11t0238700-00
Chr11	irgsp1_rep	mRNA	7419636	7421020	.	-	.	ID=Os11t0239000-00;Name=Os11t0239000-00;Locus_id=Os11g0239000;Oryzabase Gene Symbol Synonym(s)=OsSRP-LLS%2C OrysaZ2a;Oryzabase Gene Name Synonym(s)=Serpin-Z2A;Note=Serpin-Z2A.;Transcript_evidence=Y11486 (DDBJ);ORF_evidence=Q53KT1 (UniProt);GO=Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Protease inhibitor I4%2C serpin (IPR000215),Protease inhibitor I4%2C serpin%2C plant (IPR015554),Serpin domain (IPR023796);Oryzabase=11587;TENOR=Os11t0239000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	7421010	7421020	.	-	.	Parent=Os11t0239000-00
Chr11	irgsp1_rep	CDS	7420614	7421009	.	-	0	Parent=Os11t0239000-00
Chr11	irgsp1_rep	CDS	7419636	7420514	.	-	0	Parent=Os11t0239000-00
Chr11	irgsp1_rep	mRNA	7428300	7429611	.	-	.	ID=Os11t0239200-00;Name=Os11t0239200-00;Locus_id=Os11g0239200;Oryzabase Gene Symbol Synonym(s)=OsSRP-FLC%2C OrysaZ2b;Oryzabase Gene Name Synonym(s)=Serpin-Z2B;Note=Serpin-Z2B.;Transcript_evidence=Q53KS9 (UniProt);ORF_evidence=Q53KS9 (UniProt);GO=Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Protease inhibitor I4%2C serpin (IPR000215),Protease inhibitor I4%2C serpin%2C plant (IPR015554),Serpin domain (IPR023796);Oryzabase=11584;TENOR=Os11t0239200-00
Chr11	irgsp1_rep	CDS	7429252	7429611	.	-	0	Parent=Os11t0239200-00
Chr11	irgsp1_rep	CDS	7428300	7429154	.	-	0	Parent=Os11t0239200-00
Chr11	irgsp1_rep	mRNA	7434637	7435428	.	-	.	ID=Os11t0239400-00;Name=Os11t0239400-00;Locus_id=Os11g0239400;Note=Similar to Serpin (Serine protease inhibitor).;Transcript_evidence=AK359881 (DDBJ);ORF_evidence=Q53KT1 (UniProt);GO=Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Protease inhibitor I4%2C serpin (IPR000215),Protease inhibitor I4%2C serpin%2C plant (IPR015554),Serpin domain (IPR023796);TENOR=Os11t0239400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	7435024	7435428	.	-	0	Parent=Os11t0239400-00
Chr11	irgsp1_rep	CDS	7434637	7434936	.	-	0	Parent=Os11t0239400-00
Chr11	irgsp1_rep	mRNA	7437775	7439149	.	-	.	ID=Os11t0239500-01;Name=Os11t0239500-01;Locus_id=Os11g0239500;Note=Alpha/beta hydrolase fold-3 domain containing protein.;Transcript_evidence=AK065416 (DDBJ%2C Best hit);ORF_evidence=NP_001151089.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Lipase%2C GDXG%2C active site (IPR002168),Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=J013022N12;Expression=AK065416;TENOR=Os11t0239500-01;KEGG=Os11t0239500-01
Chr11	irgsp1_rep	five_prime_UTR	7439111	7439149	.	-	.	Parent=Os11t0239500-01
Chr11	irgsp1_rep	CDS	7438007	7439110	.	-	0	Parent=Os11t0239500-01
Chr11	irgsp1_rep	three_prime_UTR	7437775	7438006	.	-	.	Parent=Os11t0239500-01
Chr11	irgsp1_rep	mRNA	7460403	7461781	.	+	.	ID=Os11t0239900-01;Name=Os11t0239900-01;Locus_id=Os11g0239900;Note=Hypothetical protein.;Transcript_evidence=AK106466 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-103-H05;Expression=AK106466;TENOR=Os11t0239900-01;KEGG=Os11t0239900-01
Chr11	irgsp1_rep	five_prime_UTR	7460403	7460803	.	+	.	Parent=Os11t0239900-01
Chr11	irgsp1_rep	CDS	7460804	7461127	.	+	0	Parent=Os11t0239900-01
Chr11	irgsp1_rep	three_prime_UTR	7461128	7461781	.	+	.	Parent=Os11t0239900-01
Chr11	irgsp1_rep	mRNA	7491118	7492422	.	+	.	ID=Os11t0240550-01;Name=Os11t0240550-01;Locus_id=Os11g0240550;Note=Non-protein coding transcript.;Transcript_evidence=AK288561 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090047K15;TENOR=Os11t0240550-01
Chr11	irgsp1_rep	exon	7491118	7492422	.	+	.	Parent=Os11t0240550-01
Chr11	irgsp1_rep	mRNA	7494023	7495459	.	-	.	ID=Os11t0240600-01;Name=Os11t0240600-01;Locus_id=Os11g0240600;Note=Alpha/beta hydrolase fold-3 domain containing protein.;Transcript_evidence=AK061589 (DDBJ%2C Best hit);ORF_evidence=NP_001151089.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=001-021-G12;Expression=AK061589;TENOR=Os11t0240600-01;KEGG=Os11t0240600-01
Chr11	irgsp1_rep	five_prime_UTR	7495383	7495459	.	-	.	Parent=Os11t0240600-01
Chr11	irgsp1_rep	CDS	7494327	7495382	.	-	0	Parent=Os11t0240600-01
Chr11	irgsp1_rep	three_prime_UTR	7494023	7494326	.	-	.	Parent=Os11t0240600-01
Chr11	irgsp1_rep	mRNA	7494025	7495335	.	-	.	ID=Os11t0240600-02;Name=Os11t0240600-02;Locus_id=Os11g0240600;Note=Similar to gibberellin receptor GID1L2.;Transcript_evidence=AK120858 (DDBJ%2C Best hit);ORF_evidence=NP_001151089.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=J023024E02;Expression=AK120858;TENOR=Os11t0240600-02;KEGG=Os11t0240600-02
Chr11	irgsp1_rep	five_prime_UTR	7495335	7495335	.	-	.	Parent=Os11t0240600-02
Chr11	irgsp1_rep	CDS	7494327	7495334	.	-	0	Parent=Os11t0240600-02
Chr11	irgsp1_rep	three_prime_UTR	7494025	7494326	.	-	.	Parent=Os11t0240600-02
Chr11	irgsp1_rep	mRNA	7501179	7503573	.	-	.	ID=Os11t0240800-01;Name=Os11t0240800-01;Locus_id=Os11g0240800;Note=Hypothetical conserved gene.;Transcript_evidence=AK100421 (DDBJ%2C Best hit);ORF_evidence=Q2R873 (UniProt);NIAS_FLcDNA=J023088B04;Expression=AK100421;TENOR=Os11t0240800-01;KEGG=Os11t0240800-01
Chr11	irgsp1_rep	five_prime_UTR	7503489	7503573	.	-	.	Parent=Os11t0240800-01
Chr11	irgsp1_rep	CDS	7503258	7503488	.	-	0	Parent=Os11t0240800-01
Chr11	irgsp1_rep	three_prime_UTR	7501179	7503257	.	-	.	Parent=Os11t0240800-01
Chr11	irgsp1_rep	mRNA	7501175	7503547	.	-	.	ID=Os11t0240800-02;Name=Os11t0240800-02;Locus_id=Os11g0240800;Note=Hypothetical conserved gene.;Transcript_evidence=AK120728 (DDBJ%2C Best hit);ORF_evidence=Q2R873 (UniProt);NIAS_FLcDNA=J023003A06;Expression=AK120728;TENOR=Os11t0240800-02;KEGG=Os11t0240800-02
Chr11	irgsp1_rep	five_prime_UTR	7503489	7503547	.	-	.	Parent=Os11t0240800-02
Chr11	irgsp1_rep	CDS	7503258	7503488	.	-	0	Parent=Os11t0240800-02
Chr11	irgsp1_rep	three_prime_UTR	7501175	7503257	.	-	.	Parent=Os11t0240800-02
Chr11	irgsp1_rep	mRNA	7511885	7528278	.	+	.	ID=Os11t0240900-01;Name=Os11t0240900-01;Locus_id=Os11g0240900;Note=Protein of unknown function DUF2363 domain containing protein.;Transcript_evidence=AK099694 (DDBJ%2C Best hit);ORF_evidence=B8BJU8 (UniProt);InterPro=Protein of unknown function DUF2363 (IPR019312);NIAS_FLcDNA=J013074F01;Expression=AK099694;TENOR=Os11t0240900-01;KEGG=Os11t0240900-01
Chr11	irgsp1_rep	five_prime_UTR	7511885	7511915	.	+	.	Parent=Os11t0240900-01
Chr11	irgsp1_rep	CDS	7511916	7512149	.	+	0	Parent=Os11t0240900-01
Chr11	irgsp1_rep	CDS	7514583	7514687	.	+	0	Parent=Os11t0240900-01
Chr11	irgsp1_rep	CDS	7516553	7516639	.	+	0	Parent=Os11t0240900-01
Chr11	irgsp1_rep	CDS	7517206	7517259	.	+	0	Parent=Os11t0240900-01
Chr11	irgsp1_rep	CDS	7517356	7517501	.	+	0	Parent=Os11t0240900-01
Chr11	irgsp1_rep	CDS	7517611	7517737	.	+	1	Parent=Os11t0240900-01
Chr11	irgsp1_rep	CDS	7517818	7517955	.	+	0	Parent=Os11t0240900-01
Chr11	irgsp1_rep	CDS	7526012	7526083	.	+	0	Parent=Os11t0240900-01
Chr11	irgsp1_rep	CDS	7526158	7526231	.	+	0	Parent=Os11t0240900-01
Chr11	irgsp1_rep	CDS	7526340	7526481	.	+	1	Parent=Os11t0240900-01
Chr11	irgsp1_rep	CDS	7527101	7527179	.	+	0	Parent=Os11t0240900-01
Chr11	irgsp1_rep	CDS	7527993	7528090	.	+	2	Parent=Os11t0240900-01
Chr11	irgsp1_rep	three_prime_UTR	7528091	7528278	.	+	.	Parent=Os11t0240900-01
Chr11	irgsp1_rep	mRNA	7543920	7544969	.	+	.	ID=Os11t0241000-00;Name=Os11t0241000-00;Locus_id=Os11g0241000;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001067584.1 (RefSeq);TENOR=Os11t0241000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	7543920	7544431	.	+	0	Parent=Os11t0241000-00
Chr11	irgsp1_rep	CDS	7544894	7544969	.	+	1	Parent=Os11t0241000-00
Chr11	irgsp1_rep	mRNA	7544235	7544754	.	-	.	ID=Os11t0241100-00;Name=Os11t0241100-00;Locus_id=Os11g0241100;Note=Hypothetical protein.;Transcript_evidence=AK355144 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0241100-00
Chr11	irgsp1_rep	five_prime_UTR	7544754	7544754	.	-	.	Parent=Os11t0241100-00
Chr11	irgsp1_rep	CDS	7544235	7544753	.	-	0	Parent=Os11t0241100-00
Chr11	irgsp1_rep	mRNA	7551980	7552671	.	-	.	ID=Os11t0241200-01;Name=Os11t0241200-01;Locus_id=Os11g0241200;Note=Protein of unknown function DUF538 family protein.;Transcript_evidence=AK111322 (DDBJ%2C Best hit);ORF_evidence=A2ZCZ0 (UniProt);InterPro=Protein of unknown function DUF538 (IPR007493);NIAS_FLcDNA=002-181-D06;Expression=AK111322;TENOR=Os11t0241200-01;KEGG=Os11t0241200-01
Chr11	irgsp1_rep	five_prime_UTR	7552654	7552671	.	-	.	Parent=Os11t0241200-01
Chr11	irgsp1_rep	CDS	7552117	7552653	.	-	0	Parent=Os11t0241200-01
Chr11	irgsp1_rep	three_prime_UTR	7551980	7552116	.	-	.	Parent=Os11t0241200-01
Chr11	irgsp1_rep	mRNA	7567981	7568787	.	-	.	ID=Os11t0241700-01;Name=Os11t0241700-01;Locus_id=Os11g0241700;Note=Protein of unknown function DUF538 family protein.;Transcript_evidence=AK068339 (DDBJ%2C Best hit);ORF_evidence=A2ZCZ1 (UniProt);InterPro=Protein of unknown function DUF538 (IPR007493);NIAS_FLcDNA=J013148N01;Expression=AK068339;TENOR=Os11t0241700-01;KEGG=Os11t0241700-01
Chr11	irgsp1_rep	five_prime_UTR	7568742	7568787	.	-	.	Parent=Os11t0241700-01
Chr11	irgsp1_rep	CDS	7568280	7568741	.	-	0	Parent=Os11t0241700-01
Chr11	irgsp1_rep	three_prime_UTR	7567981	7568279	.	-	.	Parent=Os11t0241700-01
Chr11	irgsp1_rep	mRNA	7575785	7576414	.	-	.	ID=Os11t0241832-00;Name=Os11t0241832-00;Locus_id=Os11g0241832;Note=Protein of unknown function DUF538 domain containing protein.;Transcript_evidence=AK368836 (DDBJ);ORF_evidence=Q53Q19 (UniProt);InterPro=Protein of unknown function DUF538 (IPR007493);TENOR=Os11t0241832-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	7575860	7576414	.	-	0	Parent=Os11t0241832-00
Chr11	irgsp1_rep	three_prime_UTR	7575785	7575859	.	-	.	Parent=Os11t0241832-00
Chr11	irgsp1_rep	mRNA	7584428	7588362	.	-	.	ID=Os11t0241900-01;Name=Os11t0241900-01;Locus_id=Os11g0241900;Oryzabase Gene Symbol Synonym(s)=OsTBL35%2C TBL35;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 35;Note=Domain of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=AK066870 (DDBJ%2C Best hit);ORF_evidence=B8BJU9 (UniProt);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=J013075N21;Oryzabase=21490;TENOR=Os11t0241900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	7588221	7588362	.	-	.	Parent=Os11t0241900-01
Chr11	irgsp1_rep	five_prime_UTR	7587397	7587552	.	-	.	Parent=Os11t0241900-01
Chr11	irgsp1_rep	CDS	7587383	7587396	.	-	0	Parent=Os11t0241900-01
Chr11	irgsp1_rep	CDS	7586429	7586637	.	-	1	Parent=Os11t0241900-01
Chr11	irgsp1_rep	CDS	7586159	7586341	.	-	2	Parent=Os11t0241900-01
Chr11	irgsp1_rep	CDS	7585782	7585977	.	-	2	Parent=Os11t0241900-01
Chr11	irgsp1_rep	CDS	7584834	7585662	.	-	1	Parent=Os11t0241900-01
Chr11	irgsp1_rep	three_prime_UTR	7584428	7584833	.	-	.	Parent=Os11t0241900-01
Chr11	irgsp1_rep	mRNA	7595301	7606762	.	+	.	ID=Os11t0242100-01;Name=Os11t0242100-01;Locus_id=Os11g0242100;Note=Beta-glucosidase%2C GBA2 type domain containing protein.;Transcript_evidence=AK069387 (DDBJ%2C Best hit);ORF_evidence=B8BJV0 (UniProt);GO=Biological Process: sphingolipid metabolic process (GO:0006665),Biological Process: glucosylceramide catabolic process (GO:0006680),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: catalytic activity (GO:0003824),Molecular Function: glucosylceramidase activity (GO:0004348);InterPro=Glucosylceramidase (IPR006775),Six-hairpin glycosidase-like (IPR008928),Beta-glucosidase%2C GBA2 type (IPR014551),EF-Hand 1%2C calcium-binding site (IPR018247),Beta-glucosidase%2C GBA2 type%2C N-terminal (IPR024462);NIAS_FLcDNA=J023016D17;Expression=AK069387;TENOR=Os11t0242100-01;KEGG=Os11t0242100-01
Chr11	irgsp1_rep	five_prime_UTR	7595301	7595542	.	+	.	Parent=Os11t0242100-01
Chr11	irgsp1_rep	five_prime_UTR	7597170	7597190	.	+	.	Parent=Os11t0242100-01
Chr11	irgsp1_rep	CDS	7597191	7597268	.	+	0	Parent=Os11t0242100-01
Chr11	irgsp1_rep	CDS	7597632	7597736	.	+	0	Parent=Os11t0242100-01
Chr11	irgsp1_rep	CDS	7598014	7598070	.	+	0	Parent=Os11t0242100-01
Chr11	irgsp1_rep	CDS	7598191	7598261	.	+	0	Parent=Os11t0242100-01
Chr11	irgsp1_rep	CDS	7598767	7598866	.	+	1	Parent=Os11t0242100-01
Chr11	irgsp1_rep	CDS	7599803	7599873	.	+	0	Parent=Os11t0242100-01
Chr11	irgsp1_rep	CDS	7600006	7600106	.	+	1	Parent=Os11t0242100-01
Chr11	irgsp1_rep	CDS	7600188	7600291	.	+	2	Parent=Os11t0242100-01
Chr11	irgsp1_rep	CDS	7600405	7600458	.	+	0	Parent=Os11t0242100-01
Chr11	irgsp1_rep	CDS	7600594	7600649	.	+	0	Parent=Os11t0242100-01
Chr11	irgsp1_rep	CDS	7600745	7600783	.	+	1	Parent=Os11t0242100-01
Chr11	irgsp1_rep	CDS	7600899	7601043	.	+	1	Parent=Os11t0242100-01
Chr11	irgsp1_rep	CDS	7601916	7602097	.	+	0	Parent=Os11t0242100-01
Chr11	irgsp1_rep	CDS	7602187	7602254	.	+	1	Parent=Os11t0242100-01
Chr11	irgsp1_rep	CDS	7603606	7603678	.	+	2	Parent=Os11t0242100-01
Chr11	irgsp1_rep	CDS	7603768	7603829	.	+	1	Parent=Os11t0242100-01
Chr11	irgsp1_rep	CDS	7603913	7604837	.	+	2	Parent=Os11t0242100-01
Chr11	irgsp1_rep	CDS	7605601	7605891	.	+	1	Parent=Os11t0242100-01
Chr11	irgsp1_rep	CDS	7606359	7606629	.	+	1	Parent=Os11t0242100-01
Chr11	irgsp1_rep	three_prime_UTR	7606630	7606762	.	+	.	Parent=Os11t0242100-01
Chr11	irgsp1_rep	mRNA	7595368	7606762	.	+	.	ID=Os11t0242100-02;Name=Os11t0242100-02;Locus_id=Os11g0242100;Note=Beta-glucosidase%2C GBA2 type domain containing protein.;Transcript_evidence=AK098954 (DDBJ%2C Best hit);ORF_evidence=B8BJV0 (UniProt);GO=Biological Process: sphingolipid metabolic process (GO:0006665),Biological Process: glucosylceramide catabolic process (GO:0006680),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: catalytic activity (GO:0003824),Molecular Function: glucosylceramidase activity (GO:0004348);InterPro=Glucosylceramidase (IPR006775),Six-hairpin glycosidase-like (IPR008928),Beta-glucosidase%2C GBA2 type (IPR014551),EF-Hand 1%2C calcium-binding site (IPR018247),Beta-glucosidase%2C GBA2 type%2C N-terminal (IPR024462);NIAS_FLcDNA=J013062A02;Expression=AK098954;TENOR=Os11t0242100-02;KEGG=Os11t0242100-02
Chr11	irgsp1_rep	five_prime_UTR	7595368	7595542	.	+	.	Parent=Os11t0242100-02
Chr11	irgsp1_rep	five_prime_UTR	7597170	7597190	.	+	.	Parent=Os11t0242100-02
Chr11	irgsp1_rep	CDS	7597191	7597268	.	+	0	Parent=Os11t0242100-02
Chr11	irgsp1_rep	CDS	7597632	7597736	.	+	0	Parent=Os11t0242100-02
Chr11	irgsp1_rep	CDS	7598014	7598070	.	+	0	Parent=Os11t0242100-02
Chr11	irgsp1_rep	CDS	7598191	7598261	.	+	0	Parent=Os11t0242100-02
Chr11	irgsp1_rep	CDS	7598767	7598866	.	+	1	Parent=Os11t0242100-02
Chr11	irgsp1_rep	CDS	7599803	7599873	.	+	0	Parent=Os11t0242100-02
Chr11	irgsp1_rep	CDS	7600006	7600106	.	+	1	Parent=Os11t0242100-02
Chr11	irgsp1_rep	CDS	7600188	7600291	.	+	2	Parent=Os11t0242100-02
Chr11	irgsp1_rep	CDS	7600405	7600458	.	+	0	Parent=Os11t0242100-02
Chr11	irgsp1_rep	CDS	7600594	7600649	.	+	0	Parent=Os11t0242100-02
Chr11	irgsp1_rep	CDS	7600745	7600783	.	+	1	Parent=Os11t0242100-02
Chr11	irgsp1_rep	CDS	7600899	7601043	.	+	1	Parent=Os11t0242100-02
Chr11	irgsp1_rep	CDS	7601916	7602097	.	+	0	Parent=Os11t0242100-02
Chr11	irgsp1_rep	CDS	7602187	7602254	.	+	1	Parent=Os11t0242100-02
Chr11	irgsp1_rep	CDS	7603606	7603678	.	+	2	Parent=Os11t0242100-02
Chr11	irgsp1_rep	CDS	7603768	7603829	.	+	1	Parent=Os11t0242100-02
Chr11	irgsp1_rep	CDS	7603913	7604837	.	+	2	Parent=Os11t0242100-02
Chr11	irgsp1_rep	CDS	7605601	7605891	.	+	1	Parent=Os11t0242100-02
Chr11	irgsp1_rep	CDS	7606359	7606629	.	+	1	Parent=Os11t0242100-02
Chr11	irgsp1_rep	three_prime_UTR	7606630	7606762	.	+	.	Parent=Os11t0242100-02
Chr11	irgsp1_rep	mRNA	7603616	7606460	.	-	.	ID=Os11t0242150-00;Name=Os11t0242150-00;Locus_id=Os11g0242150;Note=Non-protein coding transcript.;Transcript_evidence=tplb0036f09 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os11t0242150-00
Chr11	irgsp1_rep	exon	7606344	7606460	.	-	.	Parent=Os11t0242150-00
Chr11	irgsp1_rep	exon	7605638	7605875	.	-	.	Parent=Os11t0242150-00
Chr11	irgsp1_rep	exon	7604015	7604866	.	-	.	Parent=Os11t0242150-00
Chr11	irgsp1_rep	exon	7603766	7603832	.	-	.	Parent=Os11t0242150-00
Chr11	irgsp1_rep	exon	7603616	7603675	.	-	.	Parent=Os11t0242150-00
Chr11	irgsp1_rep	mRNA	7614352	7618368	.	+	.	ID=Os11t0242200-00;Name=Os11t0242200-00;Locus_id=Os11g0242200;Oryzabase Gene Symbol Synonym(s)=OsPP2C74%2C PP2C74%2C OsPP120;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C74%2C protein phosphatase 2C 74%2C protein phosphatase 120;Note=Protein phosphatase 2C-like domain containing protein.;Transcript_evidence=tplb0019i03 (Wheat FLcDNA);ORF_evidence=NP_001176453.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);Oryzabase=17945;TENOR=Os11t0242200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	7614352	7614913	.	+	0	Parent=Os11t0242200-00
Chr11	irgsp1_rep	CDS	7617701	7617927	.	+	2	Parent=Os11t0242200-00
Chr11	irgsp1_rep	CDS	7618033	7618368	.	+	0	Parent=Os11t0242200-00
Chr11	irgsp1_rep	mRNA	7627643	7628273	.	-	.	ID=Os11t0242300-00;Name=Os11t0242300-00;Locus_id=Os11g0242300;CGSNL Gene Symbol=ERF19;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 19;Oryzabase Gene Symbol Synonym(s)=OsERF#019%2C OsERF019%2C OsERF19%2C AP2/EREBP#157%2C AP2/EREBP157;Oryzabase Gene Name Synonym(s)=ethylene response factor 19%2C APETALA2/ethylene-responsive element binding protein 157;Note=Similar to AP2 domain containing protein%2C expressed.;Transcript_evidence=DQ250027 (DDBJ);ORF_evidence=Q53N79 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);Oryzabase=10543;TENOR=Os11t0242300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	7627668	7628273	.	-	0	Parent=Os11t0242300-00
Chr11	irgsp1_rep	three_prime_UTR	7627643	7627667	.	-	.	Parent=Os11t0242300-00
Chr11	irgsp1_rep	mRNA	7639863	7642949	.	-	.	ID=Os11t0242400-01;Name=Os11t0242400-01;Locus_id=Os11g0242400;Note=Similar to Rieske.;Transcript_evidence=AK067025 (DDBJ%2C Best hit);ORF_evidence=NP_001151666.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: 2 iron%2C 2 sulfur cluster binding (GO:0051537);InterPro=Rieske [2Fe-2S] iron-sulphur domain (IPR017941);NIAS_FLcDNA=J013093A06;Expression=AK067025;TENOR=Os11t0242400-01;KEGG=Os11t0242400-01
Chr11	irgsp1_rep	five_prime_UTR	7642901	7642949	.	-	.	Parent=Os11t0242400-01
Chr11	irgsp1_rep	CDS	7642520	7642900	.	-	0	Parent=Os11t0242400-01
Chr11	irgsp1_rep	CDS	7640492	7640752	.	-	0	Parent=Os11t0242400-01
Chr11	irgsp1_rep	CDS	7640072	7640263	.	-	0	Parent=Os11t0242400-01
Chr11	irgsp1_rep	three_prime_UTR	7639863	7640071	.	-	.	Parent=Os11t0242400-01
Chr11	irgsp1_rep	mRNA	7644120	7649680	.	+	.	ID=Os11t0242500-01;Name=Os11t0242500-01;Locus_id=Os11g0242500;Oryzabase Gene Symbol Synonym(s)=Orysa%3BCKL7;Oryzabase Gene Name Synonym(s)=CDK-LIKE 7%2C cyclin-dependent kinase-like 7;Note=Similar to Cyclin dependent kinase C.;Transcript_evidence=AK068916 (DDBJ%2C Best hit);ORF_evidence=B9GA47 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023002H13;Oryzabase=13305;Expression=AK068916;TENOR=Os11t0242500-01;KEGG=Os11t0242500-01 (EC:2.7.11.22)
Chr11	irgsp1_rep	five_prime_UTR	7644120	7644260	.	+	.	Parent=Os11t0242500-01
Chr11	irgsp1_rep	five_prime_UTR	7644767	7644912	.	+	.	Parent=Os11t0242500-01
Chr11	irgsp1_rep	CDS	7644913	7645479	.	+	0	Parent=Os11t0242500-01
Chr11	irgsp1_rep	CDS	7645604	7645888	.	+	0	Parent=Os11t0242500-01
Chr11	irgsp1_rep	CDS	7645967	7646284	.	+	0	Parent=Os11t0242500-01
Chr11	irgsp1_rep	CDS	7646372	7646599	.	+	0	Parent=Os11t0242500-01
Chr11	irgsp1_rep	CDS	7647422	7647522	.	+	0	Parent=Os11t0242500-01
Chr11	irgsp1_rep	CDS	7647612	7647693	.	+	1	Parent=Os11t0242500-01
Chr11	irgsp1_rep	CDS	7647990	7648148	.	+	0	Parent=Os11t0242500-01
Chr11	irgsp1_rep	three_prime_UTR	7648149	7648267	.	+	.	Parent=Os11t0242500-01
Chr11	irgsp1_rep	three_prime_UTR	7648790	7649034	.	+	.	Parent=Os11t0242500-01
Chr11	irgsp1_rep	three_prime_UTR	7649138	7649680	.	+	.	Parent=Os11t0242500-01
Chr11	irgsp1_rep	mRNA	7651046	7652401	.	-	.	ID=Os11t0242600-00;Name=Os11t0242600-00;Locus_id=Os11g0242600;Note=Protein of unknown function DUF579%2C plant family protein.;Transcript_evidence=CT835698 (DDBJ%2C Best hit);ORF_evidence=NP_001067591.1 (RefSeq);InterPro=Conserved hypothetical protein CHP01627 (IPR006514),Protein of unknown function DUF579 (IPR021148);TENOR=Os11t0242600-00;KEGG=Os11t0242600-00
Chr11	irgsp1_rep	five_prime_UTR	7652277	7652401	.	-	.	Parent=Os11t0242600-00
Chr11	irgsp1_rep	CDS	7651326	7652276	.	-	0	Parent=Os11t0242600-00
Chr11	irgsp1_rep	three_prime_UTR	7651046	7651325	.	-	.	Parent=Os11t0242600-00
Chr11	irgsp1_rep	mRNA	7655586	7659296	.	+	.	ID=Os11t0242700-01;Name=Os11t0242700-01;Locus_id=Os11g0242700;Note=Similar to Ribosomal protein L37.;Transcript_evidence=AK064219 (DDBJ%2C Best hit);ORF_evidence=B6T670 (UniProt);NIAS_FLcDNA=002-104-F11;Expression=AK064219;TENOR=Os11t0242700-01;KEGG=Os11t0242700-01
Chr11	irgsp1_rep	five_prime_UTR	7655586	7655604	.	+	.	Parent=Os11t0242700-01
Chr11	irgsp1_rep	CDS	7655605	7655764	.	+	0	Parent=Os11t0242700-01
Chr11	irgsp1_rep	CDS	7656952	7657123	.	+	2	Parent=Os11t0242700-01
Chr11	irgsp1_rep	CDS	7658802	7658892	.	+	1	Parent=Os11t0242700-01
Chr11	irgsp1_rep	three_prime_UTR	7658893	7659296	.	+	.	Parent=Os11t0242700-01
Chr11	irgsp1_rep	mRNA	7659701	7662180	.	+	.	ID=Os11t0242800-01;Name=Os11t0242800-01;Locus_id=Os11g0242800;RAP-DB Gene Symbol Synonym(s)=LHCB5;RAP-DB Gene Name Synonym(s)=light-harvesting complex II protein LHCB5;Oryzabase Gene Symbol Synonym(s)=ASCAB9-A%2C CP26%2C Lhcb5%2C LHCB5%2C OsLHCB5;Oryzabase Gene Name Synonym(s)=light-harvesting protein ASCAB9-A%2C PSII CP26%2C PSII Lhcb5%2C light-harvesting complex II protein LHCB5;Note=Light-harvesting complex II protein%2C Light-dependent rice blast resistance;Transcript_evidence=AK061295,AK098872,AK104824;ORF_evidence=Q53N83;InterPro=Chlorophyll a/b binding domain superfamily (IPR023329),Chlorophyll A-B binding protein (IPR022796);NIAS_FLcDNA=006-301-D05,J013001B10,001-041-F05;Manual Curation=April 6%2C 2020;Literature_PMID=31405986;Oryzabase=9604;TENOR=Os11t0242800-01;Subcellular location=chloroplast (GO:0009507)
Chr11	irgsp1_rep	five_prime_UTR	7659701	7659790	.	+	.	Parent=Os11t0242800-01
Chr11	irgsp1_rep	CDS	7659791	7659989	.	+	0	Parent=Os11t0242800-01
Chr11	irgsp1_rep	CDS	7660102	7660186	.	+	2	Parent=Os11t0242800-01
Chr11	irgsp1_rep	CDS	7660731	7660781	.	+	1	Parent=Os11t0242800-01
Chr11	irgsp1_rep	CDS	7660882	7661002	.	+	1	Parent=Os11t0242800-01
Chr11	irgsp1_rep	CDS	7661110	7661244	.	+	0	Parent=Os11t0242800-01
Chr11	irgsp1_rep	CDS	7661677	7661937	.	+	0	Parent=Os11t0242800-01
Chr11	irgsp1_rep	three_prime_UTR	7661938	7662180	.	+	.	Parent=Os11t0242800-01
Chr11	irgsp1_rep	mRNA	7678686	7679890	.	-	.	ID=Os11t0242900-00;Name=Os11t0242900-00;Locus_id=Os11g0242900;Note=Putative B3 domain-containing protein Os11g0242900.;Transcript_evidence=Q53N90 (UniProt);ORF_evidence=Q53N90 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);TENOR=Os11t0242900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	7679599	7679890	.	-	0	Parent=Os11t0242900-00
Chr11	irgsp1_rep	CDS	7679433	7679495	.	-	2	Parent=Os11t0242900-00
Chr11	irgsp1_rep	CDS	7679015	7679178	.	-	2	Parent=Os11t0242900-00
Chr11	irgsp1_rep	CDS	7678686	7678865	.	-	0	Parent=Os11t0242900-00
Chr11	irgsp1_rep	mRNA	7694141	7696295	.	-	.	ID=Os11t0243300-01;Name=Os11t0243300-01;Locus_id=Os11g0243300;Oryzabase Gene Symbol Synonym(s)=OsZHD4;Oryzabase Gene Name Synonym(s)=zinc finger homeodomain class homeobox transcription factor 4;Note=Similar to ZF-HD protein dimerisation region containing protein%2C expressed.;Transcript_evidence=AK287714 (DDBJ%2C Best hit);ORF_evidence=B0LK17 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Homeobox domain%2C ZF-HD class (IPR006455),ZF-HD homeobox protein%2C Cys/His-rich dimerisation domain (IPR006456),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);NIAS_FLcDNA=J065133O18;Oryzabase=15617;TENOR=Os11t0243300-01;KEGG=Os11t0243300-01
Chr11	irgsp1_rep	five_prime_UTR	7696268	7696295	.	-	.	Parent=Os11t0243300-01
Chr11	irgsp1_rep	CDS	7695014	7696267	.	-	0	Parent=Os11t0243300-01
Chr11	irgsp1_rep	three_prime_UTR	7694141	7695013	.	-	.	Parent=Os11t0243300-01
Chr11	irgsp1_rep	mRNA	7708790	7709483	.	-	.	ID=Os11t0243600-01;Name=Os11t0243600-01;Locus_id=Os11g0243600;Note=Hypothetical protein.;Transcript_evidence=AK241717 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065197P04;TENOR=Os11t0243600-01;KEGG=Os11t0243600-01
Chr11	irgsp1_rep	five_prime_UTR	7709385	7709483	.	-	.	Parent=Os11t0243600-01
Chr11	irgsp1_rep	CDS	7709124	7709384	.	-	0	Parent=Os11t0243600-01
Chr11	irgsp1_rep	three_prime_UTR	7708790	7709123	.	-	.	Parent=Os11t0243600-01
Chr11	irgsp1_rep	mRNA	7716589	7717070	.	-	.	ID=Os11t0243750-01;Name=Os11t0243750-01;Locus_id=Os11g0243750;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=AK241383 (DDBJ%2C Best hit);ORF_evidence=Q53N93 (UniProt);NIAS_FLcDNA=J065155P05;TENOR=Os11t0243750-01;KEGG=Os11t0243750-01
Chr11	irgsp1_rep	five_prime_UTR	7717011	7717070	.	-	.	Parent=Os11t0243750-01
Chr11	irgsp1_rep	CDS	7716699	7717010	.	-	0	Parent=Os11t0243750-01
Chr11	irgsp1_rep	three_prime_UTR	7716589	7716698	.	-	.	Parent=Os11t0243750-01
Chr11	irgsp1_rep	mRNA	7732662	7734452	.	-	.	ID=Os11t0243925-00;Name=Os11t0243925-00;Locus_id=Os11g0243925;Note=Similar to ZmEBE-2 protein.;Transcript_evidence=AJ437284 (DDBJ);ORF_evidence=Q84VQ9 (UniProt);InterPro=Glucoamylase%2C putatuve (IPR004314);TENOR=Os11t0243925-00
Chr11	irgsp1_rep	five_prime_UTR	7734390	7734452	.	-	.	Parent=Os11t0243925-00
Chr11	irgsp1_rep	CDS	7734285	7734389	.	-	0	Parent=Os11t0243925-00
Chr11	irgsp1_rep	CDS	7733924	7734061	.	-	0	Parent=Os11t0243925-00
Chr11	irgsp1_rep	CDS	7733047	7733181	.	-	0	Parent=Os11t0243925-00
Chr11	irgsp1_rep	three_prime_UTR	7733023	7733046	.	-	.	Parent=Os11t0243925-00
Chr11	irgsp1_rep	three_prime_UTR	7732662	7732864	.	-	.	Parent=Os11t0243925-00
Chr11	irgsp1_rep	mRNA	7745916	7747416	.	-	.	ID=Os11t0244100-00;Name=Os11t0244100-00;Locus_id=Os11g0244100;Note=Transferase family protein.;Transcript_evidence=tplb0042m20 (Wheat FLcDNA);ORF_evidence=XP_002865477.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os11t0244100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	7745980	7747416	.	-	0	Parent=Os11t0244100-00
Chr11	irgsp1_rep	three_prime_UTR	7745916	7745979	.	-	.	Parent=Os11t0244100-00
Chr11	irgsp1_rep	mRNA	7750382	7751125	.	-	.	ID=Os11t0244200-01;Name=Os11t0244200-01;Locus_id=Os11g0244200;Oryzabase Gene Symbol Synonym(s)=hsp20;Note=Similar to Pisum sativum 17.9 kDa heat shock protein (hsp17.9) (Fragment).;Transcript_evidence=AK107883 (DDBJ%2C Best hit);ORF_evidence=Q53M11 (UniProt);InterPro=Heat shock protein Hsp20 (IPR002068),HSP20-like chaperone (IPR008978);NIAS_FLcDNA=002-134-D09;Oryzabase=23572;Expression=AK107883;TENOR=Os11t0244200-01;KEGG=Os11t0244200-01
Chr11	irgsp1_rep	five_prime_UTR	7751073	7751125	.	-	.	Parent=Os11t0244200-01
Chr11	irgsp1_rep	CDS	7750452	7751072	.	-	0	Parent=Os11t0244200-01
Chr11	irgsp1_rep	three_prime_UTR	7750382	7750451	.	-	.	Parent=Os11t0244200-01
Chr11	irgsp1_rep	mRNA	7753682	7754794	.	-	.	ID=Os11t0244300-01;Name=Os11t0244300-01;Locus_id=Os11g0244300;Note=Similar to ATPase%2C AAA family protein.;Transcript_evidence=AK062707 (DDBJ%2C Best hit);ORF_evidence=Q53M12 (UniProt);NIAS_FLcDNA=001-106-B10;TENOR=Os11t0244300-01
Chr11	irgsp1_rep	CDS	7754169	7754794	.	-	0	Parent=Os11t0244300-01
Chr11	irgsp1_rep	CDS	7753682	7753737	.	-	1	Parent=Os11t0244300-01
Chr11	irgsp1_rep	mRNA	7771154	7772455	.	-	.	ID=Os11t0244600-01;Name=Os11t0244600-01;Locus_id=Os11g0244600;Note=Epsin-like%2C N-terminal domain containing protein.;Transcript_evidence=AK105539 (DDBJ%2C Best hit);ORF_evidence=Q53M05 (UniProt);GO=Biological Process: clathrin coat assembly (GO:0048268),Cellular Component: clathrin coat (GO:0030118),Molecular Function: phospholipid binding (GO:0005543),Molecular Function: 1-phosphatidylinositol binding (GO:0005545),Molecular Function: clathrin binding (GO:0030276);InterPro=ENTH/VHS (IPR008942),ANTH (IPR011417),Epsin-like%2C N-terminal (IPR013809),Clathrin adaptor%2C phosphoinositide-binding%2C GAT-like (IPR014712);NIAS_FLcDNA=001-127-H08;Expression=AK105539;TENOR=Os11t0244600-01;KEGG=Os11t0244600-01
Chr11	irgsp1_rep	five_prime_UTR	7772454	7772455	.	-	.	Parent=Os11t0244600-01
Chr11	irgsp1_rep	CDS	7771266	7772453	.	-	0	Parent=Os11t0244600-01
Chr11	irgsp1_rep	three_prime_UTR	7771154	7771265	.	-	.	Parent=Os11t0244600-01
Chr11	irgsp1_rep	mRNA	7776681	7784137	.	-	.	ID=Os11t0244800-01;Name=Os11t0244800-01;Locus_id=Os11g0244800;Note=Similar to Alfin-1.;Transcript_evidence=AK103215 (DDBJ%2C Best hit);ORF_evidence=B4FG78 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-type%2C conserved site (IPR019786),Zinc finger%2C PHD-finger (IPR019787),Protein of unknown function DUF3594 (IPR021998);NIAS_FLcDNA=J033122M22;Expression=AK103215;TENOR=Os11t0244800-01;KEGG=Os11t0244800-01
Chr11	irgsp1_rep	five_prime_UTR	7784042	7784137	.	-	.	Parent=Os11t0244800-01
Chr11	irgsp1_rep	CDS	7783951	7784041	.	-	0	Parent=Os11t0244800-01
Chr11	irgsp1_rep	CDS	7783733	7783765	.	-	2	Parent=Os11t0244800-01
Chr11	irgsp1_rep	CDS	7782356	7782584	.	-	2	Parent=Os11t0244800-01
Chr11	irgsp1_rep	CDS	7777393	7777519	.	-	1	Parent=Os11t0244800-01
Chr11	irgsp1_rep	CDS	7777018	7777302	.	-	0	Parent=Os11t0244800-01
Chr11	irgsp1_rep	three_prime_UTR	7776681	7777017	.	-	.	Parent=Os11t0244800-01
Chr11	irgsp1_rep	mRNA	7785872	7788341	.	-	.	ID=Os11t0244900-00;Name=Os11t0244900-00;Locus_id=Os11g0244900;Note=FAR1 DNA binding domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9GA53 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=FAR1 DNA binding domain (IPR004330),Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);TENOR=Os11t0244900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	7788027	7788341	.	-	0	Parent=Os11t0244900-00
Chr11	irgsp1_rep	CDS	7786508	7787798	.	-	0	Parent=Os11t0244900-00
Chr11	irgsp1_rep	CDS	7785872	7786038	.	-	2	Parent=Os11t0244900-00
Chr11	irgsp1_rep	mRNA	7796607	7803116	.	-	.	ID=Os11t0245000-01;Name=Os11t0245000-01;Locus_id=Os11g0245000;Note=Non-protein coding transcript.;Transcript_evidence=AK241946 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J075090C09;TENOR=Os11t0245000-01
Chr11	irgsp1_rep	exon	7803010	7803116	.	-	.	Parent=Os11t0245000-01
Chr11	irgsp1_rep	exon	7798479	7799617	.	-	.	Parent=Os11t0245000-01
Chr11	irgsp1_rep	exon	7796607	7797836	.	-	.	Parent=Os11t0245000-01
Chr11	irgsp1_rep	mRNA	7792164	7794861	.	+	.	ID=Os11t0245100-01;Name=Os11t0245100-01;Locus_id=Os11g0245100;CGSNL Gene Symbol=GSTZ4;CGSNL Gene Name=ZETA GLUTATHIONE S-TRANSFERASE 4;Oryzabase Gene Symbol Synonym(s)=OsGSTZ4;Note=Similar to Glutathione S-transferase 2.;Transcript_evidence=AK241592 (DDBJ%2C Best hit);ORF_evidence=Q0GKV1 (UniProt);GO=Biological Process: aromatic amino acid family metabolic process (GO:0009072),Cellular Component: cytoplasm (GO:0005737),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Maleylacetoacetate isomerase (IPR005955),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=J065182P11;Oryzabase=9571;TENOR=Os11t0245100-01;KEGG=Os11t0245100-01 (EC:2.5.1.18%2C EC:5.2.1.2)
Chr11	irgsp1_rep	five_prime_UTR	7792164	7792295	.	+	.	Parent=Os11t0245100-01
Chr11	irgsp1_rep	CDS	7792296	7792328	.	+	0	Parent=Os11t0245100-01
Chr11	irgsp1_rep	CDS	7792445	7792610	.	+	0	Parent=Os11t0245100-01
Chr11	irgsp1_rep	CDS	7793011	7793099	.	+	2	Parent=Os11t0245100-01
Chr11	irgsp1_rep	CDS	7793203	7793274	.	+	0	Parent=Os11t0245100-01
Chr11	irgsp1_rep	CDS	7793567	7793620	.	+	0	Parent=Os11t0245100-01
Chr11	irgsp1_rep	CDS	7793760	7793835	.	+	0	Parent=Os11t0245100-01
Chr11	irgsp1_rep	CDS	7793998	7794059	.	+	2	Parent=Os11t0245100-01
Chr11	irgsp1_rep	CDS	7794205	7794264	.	+	0	Parent=Os11t0245100-01
Chr11	irgsp1_rep	CDS	7794423	7794533	.	+	0	Parent=Os11t0245100-01
Chr11	irgsp1_rep	three_prime_UTR	7794534	7794861	.	+	.	Parent=Os11t0245100-01
Chr11	irgsp1_rep	mRNA	7797013	7802607	.	+	.	ID=Os11t0245200-01;Name=Os11t0245200-01;Locus_id=Os11g0245200;Note=Similar to leucine-rich repeat family protein / protein kinase family protein.;Transcript_evidence=AK243309 (DDBJ%2C Best hit);ORF_evidence=NP_199787.2 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J100055I10;TENOR=Os11t0245200-01;KEGG=Os11t0245200-01
Chr11	irgsp1_rep	five_prime_UTR	7797013	7797074	.	+	.	Parent=Os11t0245200-01
Chr11	irgsp1_rep	CDS	7797075	7797180	.	+	0	Parent=Os11t0245200-01
Chr11	irgsp1_rep	CDS	7797278	7797407	.	+	2	Parent=Os11t0245200-01
Chr11	irgsp1_rep	CDS	7797545	7797616	.	+	1	Parent=Os11t0245200-01
Chr11	irgsp1_rep	CDS	7797767	7797838	.	+	1	Parent=Os11t0245200-01
Chr11	irgsp1_rep	CDS	7798034	7798105	.	+	1	Parent=Os11t0245200-01
Chr11	irgsp1_rep	CDS	7798444	7798605	.	+	1	Parent=Os11t0245200-01
Chr11	irgsp1_rep	CDS	7798692	7798766	.	+	1	Parent=Os11t0245200-01
Chr11	irgsp1_rep	CDS	7798865	7798936	.	+	1	Parent=Os11t0245200-01
Chr11	irgsp1_rep	CDS	7799031	7799105	.	+	1	Parent=Os11t0245200-01
Chr11	irgsp1_rep	CDS	7799195	7799263	.	+	1	Parent=Os11t0245200-01
Chr11	irgsp1_rep	CDS	7799390	7799464	.	+	1	Parent=Os11t0245200-01
Chr11	irgsp1_rep	CDS	7799548	7799619	.	+	1	Parent=Os11t0245200-01
Chr11	irgsp1_rep	CDS	7799752	7799889	.	+	1	Parent=Os11t0245200-01
Chr11	irgsp1_rep	CDS	7800146	7800648	.	+	1	Parent=Os11t0245200-01
Chr11	irgsp1_rep	CDS	7800767	7800931	.	+	2	Parent=Os11t0245200-01
Chr11	irgsp1_rep	CDS	7801027	7801163	.	+	2	Parent=Os11t0245200-01
Chr11	irgsp1_rep	CDS	7801248	7801467	.	+	0	Parent=Os11t0245200-01
Chr11	irgsp1_rep	CDS	7801553	7801788	.	+	2	Parent=Os11t0245200-01
Chr11	irgsp1_rep	CDS	7801925	7802392	.	+	0	Parent=Os11t0245200-01
Chr11	irgsp1_rep	three_prime_UTR	7802393	7802607	.	+	.	Parent=Os11t0245200-01
Chr11	irgsp1_rep	mRNA	7804503	7806059	.	-	.	ID=Os11t0245400-01;Name=Os11t0245400-01;Locus_id=Os11g0245400;Note=Protein of unknown function DUF1685 domain containing protein.;Transcript_evidence=AK120678 (DDBJ%2C Best hit);ORF_evidence=A2XPE4 (UniProt);InterPro=Protein of unknown function DUF1685 (IPR012881);NIAS_FLcDNA=J013162H21;TENOR=Os11t0245400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	7806045	7806059	.	-	.	Parent=Os11t0245400-01
Chr11	irgsp1_rep	CDS	7804998	7806044	.	-	0	Parent=Os11t0245400-01
Chr11	irgsp1_rep	three_prime_UTR	7804503	7804997	.	-	.	Parent=Os11t0245400-01
Chr11	irgsp1_rep	mRNA	7810223	7810985	.	-	.	ID=Os11t0245466-00;Name=Os11t0245466-00;Locus_id=Os11g0245466;Note=Conserved hypothetical protein.;Transcript_evidence=AK372805 (DDBJ);ORF_evidence=Q7XT22 (UniProt);TENOR=Os11t0245466-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	7810785	7810985	.	-	0	Parent=Os11t0245466-00
Chr11	irgsp1_rep	three_prime_UTR	7810223	7810784	.	-	.	Parent=Os11t0245466-00
Chr11	irgsp1_rep	mRNA	7817994	7824068	.	-	.	ID=Os11t0245500-01;Name=Os11t0245500-01;Locus_id=Os11g0245500;Note=Lipid-binding START domain containing protein.;Transcript_evidence=AK063483 (DDBJ%2C Best hit);ORF_evidence=A3CA57 (UniProt);InterPro=Lipid-binding START (IPR002913),START-like domain (IPR023393);NIAS_FLcDNA=001-116-B12;Expression=AK063483;TENOR=Os11t0245500-01;KEGG=Os11t0245500-01
Chr11	irgsp1_rep	five_prime_UTR	7823856	7824068	.	-	.	Parent=Os11t0245500-01
Chr11	irgsp1_rep	CDS	7823797	7823855	.	-	0	Parent=Os11t0245500-01
Chr11	irgsp1_rep	CDS	7823247	7823505	.	-	1	Parent=Os11t0245500-01
Chr11	irgsp1_rep	CDS	7818239	7818733	.	-	0	Parent=Os11t0245500-01
Chr11	irgsp1_rep	three_prime_UTR	7817994	7818238	.	-	.	Parent=Os11t0245500-01
Chr11	irgsp1_rep	mRNA	7830614	7832452	.	-	.	ID=Os11t0245650-01;Name=Os11t0245650-01;Locus_id=Os11g0245650;Note=Conserved hypothetical protein.;Transcript_evidence=AK242449 (DDBJ%2C Best hit);ORF_evidence=NP_001176459.1 (RefSeq);NIAS_FLcDNA=J080096A01;TENOR=Os11t0245650-01;KEGG=Os11t0245650-01
Chr11	irgsp1_rep	five_prime_UTR	7832113	7832452	.	-	.	Parent=Os11t0245650-01
Chr11	irgsp1_rep	CDS	7831813	7832112	.	-	0	Parent=Os11t0245650-01
Chr11	irgsp1_rep	three_prime_UTR	7830614	7831812	.	-	.	Parent=Os11t0245650-01
Chr11	irgsp1_rep	mRNA	7860100	7864643	.	+	.	ID=Os11t0245800-01;Name=Os11t0245800-01;Locus_id=Os11g0245800;Note=Similar to Rp1-like protein (Fragment).;Transcript_evidence=AK105722 (DDBJ%2C Best hit);ORF_evidence=E0Y9Z2 (UniProt);NIAS_FLcDNA=001-201-G02;Expression=AK105722;TENOR=Os11t0245800-01;KEGG=Os11t0245800-01
Chr11	irgsp1_rep	five_prime_UTR	7860100	7860101	.	+	.	Parent=Os11t0245800-01
Chr11	irgsp1_rep	CDS	7860102	7860988	.	+	0	Parent=Os11t0245800-01
Chr11	irgsp1_rep	CDS	7861387	7861455	.	+	1	Parent=Os11t0245800-01
Chr11	irgsp1_rep	CDS	7862377	7862395	.	+	1	Parent=Os11t0245800-01
Chr11	irgsp1_rep	three_prime_UTR	7862396	7862832	.	+	.	Parent=Os11t0245800-01
Chr11	irgsp1_rep	three_prime_UTR	7863242	7863561	.	+	.	Parent=Os11t0245800-01
Chr11	irgsp1_rep	three_prime_UTR	7864381	7864643	.	+	.	Parent=Os11t0245800-01
Chr11	irgsp1_rep	mRNA	7865727	7867485	.	+	.	ID=Os11t0245900-01;Name=Os11t0245900-01;Locus_id=Os11g0245900;Note=Hypothetical protein.;Transcript_evidence=AK120225 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013041P17;Expression=AK120225;TENOR=Os11t0245900-01;KEGG=Os11t0245900-01
Chr11	irgsp1_rep	five_prime_UTR	7865727	7866080	.	+	.	Parent=Os11t0245900-01
Chr11	irgsp1_rep	CDS	7866081	7866650	.	+	0	Parent=Os11t0245900-01
Chr11	irgsp1_rep	three_prime_UTR	7866651	7867485	.	+	.	Parent=Os11t0245900-01
Chr11	irgsp1_rep	mRNA	7869341	7871918	.	+	.	ID=Os11t0246100-01;Name=Os11t0246100-01;Locus_id=Os11g0246100;Note=Mitochodrial transcription termination factor-related family protein.;Transcript_evidence=AK120471 (DDBJ%2C Best hit);ORF_evidence=B9V0G4 (UniProt);InterPro=Mitochodrial transcription termination factor-related (IPR003690);NIAS_FLcDNA=J013109M21;Expression=AK120471;TENOR=Os11t0246100-01;KEGG=Os11t0246100-01
Chr11	irgsp1_rep	five_prime_UTR	7869341	7869414	.	+	.	Parent=Os11t0246100-01
Chr11	irgsp1_rep	CDS	7869415	7870610	.	+	0	Parent=Os11t0246100-01
Chr11	irgsp1_rep	CDS	7871293	7871350	.	+	1	Parent=Os11t0246100-01
Chr11	irgsp1_rep	three_prime_UTR	7871351	7871918	.	+	.	Parent=Os11t0246100-01
Chr11	irgsp1_rep	mRNA	7869382	7870648	.	-	.	ID=Os11t0246133-00;Name=Os11t0246133-00;Locus_id=Os11g0246133;Note=Hypothetical protein.;Transcript_evidence=tplb0041e08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0246133-00
Chr11	irgsp1_rep	five_prime_UTR	7870338	7870648	.	-	.	Parent=Os11t0246133-00
Chr11	irgsp1_rep	CDS	7869576	7870337	.	-	0	Parent=Os11t0246133-00
Chr11	irgsp1_rep	three_prime_UTR	7869382	7869575	.	-	.	Parent=Os11t0246133-00
Chr11	irgsp1_rep	mRNA	7878328	7879444	.	+	.	ID=Os11t0246166-00;Name=Os11t0246166-00;Locus_id=Os11g0246166;Note=Hypothetical protein.;Transcript_evidence=tplb0054i08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0246166-00
Chr11	irgsp1_rep	CDS	7878328	7879444	.	+	0	Parent=Os11t0246166-00
Chr11	irgsp1_rep	mRNA	7878340	7879571	.	-	.	ID=Os11t0246200-00;Name=Os11t0246200-00;Locus_id=Os11g0246200;Oryzabase Gene Symbol Synonym(s)=OsKMD4%2C OsFbox596%2C Os_F0436;Oryzabase Gene Name Synonym(s)=KISS ME DEADLY4%2C KISS ME DEADLY 4%2C F-box protein 596;Note=Kelch-type beta propeller domain containing protein.;Transcript_evidence=EU967558 (DDBJ);ORF_evidence=B6TRE3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Kelch repeat type 1 (IPR006652),Galactose oxidase%2C beta-propeller (IPR015916),F-box domain%2C Skp2-like (IPR022364);Oryzabase=16706;TENOR=Os11t0246200-00;KEGG=Os11t0246200-00
Chr11	irgsp1_rep	five_prime_UTR	7879492	7879571	.	-	.	Parent=Os11t0246200-00
Chr11	irgsp1_rep	CDS	7878340	7879491	.	-	0	Parent=Os11t0246200-00
Chr11	irgsp1_rep	mRNA	7888315	7889590	.	-	.	ID=Os11t0246250-01;Name=Os11t0246250-01;Locus_id=Os11g0246250;Note=Non-protein coding transcript.;Transcript_evidence=AK242331 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J075198I23;TENOR=Os11t0246250-01
Chr11	irgsp1_rep	exon	7888315	7889590	.	-	.	Parent=Os11t0246250-01
Chr11	irgsp1_rep	mRNA	7897301	7902148	.	-	.	ID=Os11t0246300-00;Name=Os11t0246300-00;Locus_id=Os11g0246300;Note=Conserved hypothetical protein.;Transcript_evidence=CT835668 (DDBJ%2C Best hit);ORF_evidence=A2ZD23 (UniProt);TENOR=Os11t0246300-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	7901864	7902148	.	-	.	Parent=Os11t0246300-00
Chr11	irgsp1_rep	CDS	7901631	7901863	.	-	0	Parent=Os11t0246300-00
Chr11	irgsp1_rep	CDS	7901294	7901294	.	-	1	Parent=Os11t0246300-00
Chr11	irgsp1_rep	three_prime_UTR	7900962	7901293	.	-	.	Parent=Os11t0246300-00
Chr11	irgsp1_rep	three_prime_UTR	7900301	7900858	.	-	.	Parent=Os11t0246300-00
Chr11	irgsp1_rep	three_prime_UTR	7899850	7899923	.	-	.	Parent=Os11t0246300-00
Chr11	irgsp1_rep	three_prime_UTR	7897301	7897663	.	-	.	Parent=Os11t0246300-00
Chr11	irgsp1_rep	mRNA	7909213	7916588	.	+	.	ID=Os11t0246600-00;Name=Os11t0246600-00;Locus_id=Os11g0246600;Oryzabase Gene Symbol Synonym(s)=OsDegp12%2C DEGP12%2C OsDeg14;Oryzabase Gene Name Synonym(s)=Deg protease 12%2C DEG PROTEASE 12;Note=Similar to Peptidase S1 and S6%2C chymotrypsin/Hap.;Transcript_evidence=ab initio prediction;ORF_evidence=A2Q336 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: catalytic activity (GO:0003824),Molecular Function: serine-type endopeptidase activity (GO:0004252),Molecular Function: protein binding (GO:0005515);InterPro=Peptidase S1/S6%2C chymotrypsin/Hap (IPR001254),PDZ/DHR/GLGF (IPR001478),Peptidase S1C%2C HrtA/DegP2/Q/S (IPR001940),Peptidase cysteine/serine%2C trypsin-like (IPR009003);Oryzabase=20088;TENOR=Os11t0246600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	7909213	7909477	.	+	0	Parent=Os11t0246600-00
Chr11	irgsp1_rep	CDS	7910418	7910672	.	+	2	Parent=Os11t0246600-00
Chr11	irgsp1_rep	CDS	7910757	7910884	.	+	2	Parent=Os11t0246600-00
Chr11	irgsp1_rep	CDS	7911823	7912029	.	+	0	Parent=Os11t0246600-00
Chr11	irgsp1_rep	CDS	7914013	7914155	.	+	0	Parent=Os11t0246600-00
Chr11	irgsp1_rep	CDS	7915879	7915999	.	+	1	Parent=Os11t0246600-00
Chr11	irgsp1_rep	CDS	7916252	7916344	.	+	0	Parent=Os11t0246600-00
Chr11	irgsp1_rep	CDS	7916472	7916588	.	+	0	Parent=Os11t0246600-00
Chr11	irgsp1_rep	mRNA	7932223	7935640	.	+	.	ID=Os11t0246900-01;Name=Os11t0246900-01;Locus_id=Os11g0246900;Note=Ankyrin repeat containing protein.;Transcript_evidence=AK102030 (DDBJ%2C Best hit);ORF_evidence=Q9M1Y3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J033080P19;Expression=AK102030;TENOR=Os11t0246900-01;KEGG=Os11t0246900-01
Chr11	irgsp1_rep	five_prime_UTR	7932223	7932233	.	+	.	Parent=Os11t0246900-01
Chr11	irgsp1_rep	CDS	7932234	7932279	.	+	0	Parent=Os11t0246900-01
Chr11	irgsp1_rep	CDS	7932345	7932801	.	+	2	Parent=Os11t0246900-01
Chr11	irgsp1_rep	CDS	7932950	7933382	.	+	1	Parent=Os11t0246900-01
Chr11	irgsp1_rep	CDS	7934462	7935256	.	+	0	Parent=Os11t0246900-01
Chr11	irgsp1_rep	three_prime_UTR	7935257	7935640	.	+	.	Parent=Os11t0246900-01
Chr11	irgsp1_rep	mRNA	7934487	7935690	.	+	.	ID=Os11t0246900-02;Name=Os11t0246900-02;Locus_id=Os11g0246900;Note=Similar to predicted protein.;Transcript_evidence=AK061179 (DDBJ%2C Best hit);ORF_evidence=Q9M1Y3 (UniProt);InterPro=Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=006-209-D03;Expression=AK061179;TENOR=Os11t0246900-02;KEGG=Os11t0246900-02
Chr11	irgsp1_rep	five_prime_UTR	7934487	7934488	.	+	.	Parent=Os11t0246900-02
Chr11	irgsp1_rep	CDS	7934489	7935256	.	+	0	Parent=Os11t0246900-02
Chr11	irgsp1_rep	three_prime_UTR	7935257	7935690	.	+	.	Parent=Os11t0246900-02
Chr11	irgsp1_rep	mRNA	7935326	7935584	.	-	.	ID=Os11t0246950-00;Name=Os11t0246950-00;Locus_id=Os11g0246950;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os11t0246950-00
Chr11	irgsp1_rep	CDS	7935476	7935584	.	-	0	Parent=Os11t0246950-00
Chr11	irgsp1_rep	CDS	7935326	7935432	.	-	2	Parent=Os11t0246950-00
Chr11	irgsp1_rep	mRNA	7938433	7939656	.	-	.	ID=Os11t0247000-01;Name=Os11t0247000-01;Locus_id=Os11g0247000;Oryzabase Gene Symbol Synonym(s)=ARGOS;Note=Similar to Auxin-inducible protein.;Transcript_evidence=AK061481 (DDBJ%2C Best hit);ORF_evidence=B6TS57 (UniProt);NIAS_FLcDNA=006-308-H01;Oryzabase=21394;TENOR=Os11t0247000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	7939257	7939656	.	-	.	Parent=Os11t0247000-01
Chr11	irgsp1_rep	five_prime_UTR	7938913	7939059	.	-	.	Parent=Os11t0247000-01
Chr11	irgsp1_rep	CDS	7938574	7938912	.	-	0	Parent=Os11t0247000-01
Chr11	irgsp1_rep	three_prime_UTR	7938433	7938573	.	-	.	Parent=Os11t0247000-01
Chr11	irgsp1_rep	mRNA	7938433	7939568	.	-	.	ID=Os11t0247000-02;Name=Os11t0247000-02;Locus_id=Os11g0247000;Oryzabase Gene Symbol Synonym(s)=ARGOS;Note=Similar to Auxin-inducible protein.;Transcript_evidence=AK060546 (DDBJ%2C Best hit);ORF_evidence=B6TS57 (UniProt);NIAS_FLcDNA=001-021-F08;Oryzabase=21394;TENOR=Os11t0247000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	7938913	7939568	.	-	.	Parent=Os11t0247000-02
Chr11	irgsp1_rep	CDS	7938574	7938912	.	-	0	Parent=Os11t0247000-02
Chr11	irgsp1_rep	three_prime_UTR	7938433	7938573	.	-	.	Parent=Os11t0247000-02
Chr11	irgsp1_rep	mRNA	7960531	7963375	.	+	.	ID=Os11t0247300-01;Name=Os11t0247300-01;Locus_id=Os11g0247300;RAP-DB Gene Symbol Synonym(s)=TID1%2C TubA2%2C SRS5%2C OS-TubA2;RAP-DB Gene Name Synonym(s)=TWISTED DWARF 1%2C Tubulin alpha-2%2C small and round seed 5;CGSNL Gene Symbol=TID1;CGSNL Gene Name=TWISTED DWARF 1;Oryzabase Gene Symbol Synonym(s)=OsTID1%2C TubA2%2C SRS5%2C OS-TubA2%2C OsTubA2%2C OsSRS5;Oryzabase Gene Name Synonym(s)=TWISTED DWARF1%2C Tubulin alpha-2%2C Tubulin alpha-2 chain%2C small and round seed 5;Note=Alpha-tubulin protein%2C Cell elongation and division;Transcript_evidence=AK102560,AB512760;ORF_evidence=Q53M52,Q0ITK1;GO=Biological Process: microtubule-based process (GO:0007017),Molecular Function: GTPase activity (GO:0003924),Molecular Function: structural constituent of cytoskeleton (GO:0005200),Molecular Function: GTP binding (GO:0005525),Cellular Component: microtubule (GO:0005874);InterPro=Tubulin (IPR000217),Alpha tubulin (IPR002452),Tubulin/FtsZ%2C GTPase domain (IPR003008),Tubulin/FtsZ%2C C-terminal (IPR008280),Tubulin/FtsZ%2C 2-layer sandwich domain (IPR018316),Tubulin%2C C-terminal (IPR023123),Tubulin%2C conserved site (IPR017975);NIAS_FLcDNA=J033097H22;Manual Curation=October 27%2C 2016;Literature_PMID=19745569;Oryzabase=14277;Expression=AK102560;TENOR=Os11t0247300-01;KEGG=Os11t0247300-01
Chr11	irgsp1_rep	five_prime_UTR	7960531	7960618	.	+	.	Parent=Os11t0247300-01
Chr11	irgsp1_rep	CDS	7960619	7960711	.	+	0	Parent=Os11t0247300-01
Chr11	irgsp1_rep	CDS	7961604	7961838	.	+	0	Parent=Os11t0247300-01
Chr11	irgsp1_rep	CDS	7961925	7962295	.	+	2	Parent=Os11t0247300-01
Chr11	irgsp1_rep	CDS	7962408	7963064	.	+	0	Parent=Os11t0247300-01
Chr11	irgsp1_rep	three_prime_UTR	7963065	7963375	.	+	.	Parent=Os11t0247300-01
Chr11	irgsp1_rep	mRNA	7961730	7962297	.	-	.	ID=Os11t0247350-00;Name=Os11t0247350-00;Locus_id=Os11g0247350;Note=Hypothetical gene.;Transcript_evidence=EU941142 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0247350-00;KEGG=Os11t0247350-00
Chr11	irgsp1_rep	five_prime_UTR	7962296	7962297	.	-	.	Parent=Os11t0247350-00
Chr11	irgsp1_rep	CDS	7961922	7962295	.	-	0	Parent=Os11t0247350-00
Chr11	irgsp1_rep	CDS	7961730	7961835	.	-	1	Parent=Os11t0247350-00
Chr11	irgsp1_rep	mRNA	7964623	7969046	.	-	.	ID=Os11t0247400-01;Name=Os11t0247400-01;Locus_id=Os11g0247400;Note=Haemolysin A domain containing protein.;Transcript_evidence=AK066553 (DDBJ%2C Best hit);ORF_evidence=NP_001152354.1 (RefSeq);GO=Biological Process: hemolysis by symbiont of host erythrocytes (GO:0019836),Biological Process: methylation (GO:0032259),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Ribosomal RNA methyltransferase RrmJ/FtsJ (IPR002877),RNA-binding S4 (IPR002942),Haemolysin A (IPR004538);NIAS_FLcDNA=J013072J16;Expression=AK066553;TENOR=Os11t0247400-01;KEGG=Os11t0247400-01
Chr11	irgsp1_rep	five_prime_UTR	7968869	7969046	.	-	.	Parent=Os11t0247400-01
Chr11	irgsp1_rep	CDS	7968832	7968868	.	-	0	Parent=Os11t0247400-01
Chr11	irgsp1_rep	CDS	7968378	7968465	.	-	2	Parent=Os11t0247400-01
Chr11	irgsp1_rep	CDS	7967784	7967863	.	-	1	Parent=Os11t0247400-01
Chr11	irgsp1_rep	CDS	7967008	7967110	.	-	2	Parent=Os11t0247400-01
Chr11	irgsp1_rep	CDS	7966755	7966911	.	-	1	Parent=Os11t0247400-01
Chr11	irgsp1_rep	CDS	7966506	7966634	.	-	0	Parent=Os11t0247400-01
Chr11	irgsp1_rep	CDS	7965389	7965475	.	-	0	Parent=Os11t0247400-01
Chr11	irgsp1_rep	CDS	7965183	7965227	.	-	0	Parent=Os11t0247400-01
Chr11	irgsp1_rep	CDS	7964740	7964901	.	-	0	Parent=Os11t0247400-01
Chr11	irgsp1_rep	three_prime_UTR	7964623	7964739	.	-	.	Parent=Os11t0247400-01
Chr11	irgsp1_rep	mRNA	7970674	7972670	.	-	.	ID=Os11t0247500-01;Name=Os11t0247500-01;Locus_id=Os11g0247500;Note=Conserved hypothetical protein.;Transcript_evidence=AK110848 (DDBJ%2C Best hit);ORF_evidence=B8BJX0 (UniProt);NIAS_FLcDNA=002-172-C02;Expression=AK110848;TENOR=Os11t0247500-01;KEGG=Os11t0247500-01
Chr11	irgsp1_rep	five_prime_UTR	7972613	7972670	.	-	.	Parent=Os11t0247500-01
Chr11	irgsp1_rep	CDS	7970804	7972612	.	-	0	Parent=Os11t0247500-01
Chr11	irgsp1_rep	three_prime_UTR	7970674	7970803	.	-	.	Parent=Os11t0247500-01
Chr11	irgsp1_rep	mRNA	7992306	7992626	.	-	.	ID=Os11t0247800-00;Name=Os11t0247800-00;Locus_id=Os11g0247800;Note=Non-protein coding transcript.;Transcript_evidence=EU948158 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0247800-00
Chr11	irgsp1_rep	exon	7992306	7992626	.	-	.	Parent=Os11t0247800-00
Chr11	irgsp1_rep	mRNA	7997093	7997413	.	+	.	ID=Os11t0247900-00;Name=Os11t0247900-00;Locus_id=Os11g0247900;Note=Non-protein coding transcript.;Transcript_evidence=EU948158 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0247900-00
Chr11	irgsp1_rep	exon	7997093	7997413	.	+	.	Parent=Os11t0247900-00
Chr11	irgsp1_rep	mRNA	8005219	8005691	.	+	.	ID=Os11t0248000-00;Name=Os11t0248000-00;Locus_id=Os11g0248000;Note=Non-protein coding transcript.;Transcript_evidence=AK107847 (DDBJ%2C Secondary hit);ORF_evidence=NONE;TENOR=Os11t0248000-00
Chr11	irgsp1_rep	exon	8005219	8005691	.	+	.	Parent=Os11t0248000-00
Chr11	irgsp1_rep	mRNA	8018430	8024735	.	-	.	ID=Os11t0248200-01;Name=Os11t0248200-01;Locus_id=Os11g0248200;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK107293 (DDBJ%2C Best hit);ORF_evidence=B6T390 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),RNA-binding protein Lupus La (IPR006630),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=002-126-C01;Expression=AK107293;TENOR=Os11t0248200-01;KEGG=Os11t0248200-01
Chr11	irgsp1_rep	CDS	8024663	8024735	.	-	0	Parent=Os11t0248200-01
Chr11	irgsp1_rep	CDS	8023016	8023110	.	-	2	Parent=Os11t0248200-01
Chr11	irgsp1_rep	CDS	8022601	8022672	.	-	0	Parent=Os11t0248200-01
Chr11	irgsp1_rep	CDS	8022448	8022527	.	-	0	Parent=Os11t0248200-01
Chr11	irgsp1_rep	CDS	8022248	8022344	.	-	1	Parent=Os11t0248200-01
Chr11	irgsp1_rep	CDS	8021522	8021569	.	-	0	Parent=Os11t0248200-01
Chr11	irgsp1_rep	CDS	8021357	8021425	.	-	0	Parent=Os11t0248200-01
Chr11	irgsp1_rep	CDS	8020052	8020195	.	-	0	Parent=Os11t0248200-01
Chr11	irgsp1_rep	CDS	8018767	8019153	.	-	0	Parent=Os11t0248200-01
Chr11	irgsp1_rep	three_prime_UTR	8018430	8018766	.	-	.	Parent=Os11t0248200-01
Chr11	irgsp1_rep	mRNA	8018666	8027072	.	+	.	ID=Os11t0248466-00;Name=Os11t0248466-00;Locus_id=Os11g0248466;Note=Hypothetical protein.;Transcript_evidence=tplb0022j01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0248466-00
Chr11	irgsp1_rep	five_prime_UTR	8018666	8018807	.	+	.	Parent=Os11t0248466-00
Chr11	irgsp1_rep	CDS	8018808	8019155	.	+	0	Parent=Os11t0248466-00
Chr11	irgsp1_rep	CDS	8020047	8020194	.	+	0	Parent=Os11t0248466-00
Chr11	irgsp1_rep	CDS	8021356	8021438	.	+	2	Parent=Os11t0248466-00
Chr11	irgsp1_rep	three_prime_UTR	8021439	8021461	.	+	.	Parent=Os11t0248466-00
Chr11	irgsp1_rep	three_prime_UTR	8022241	8022335	.	+	.	Parent=Os11t0248466-00
Chr11	irgsp1_rep	three_prime_UTR	8022436	8022538	.	+	.	Parent=Os11t0248466-00
Chr11	irgsp1_rep	three_prime_UTR	8022607	8022678	.	+	.	Parent=Os11t0248466-00
Chr11	irgsp1_rep	three_prime_UTR	8023019	8023110	.	+	.	Parent=Os11t0248466-00
Chr11	irgsp1_rep	three_prime_UTR	8024663	8024735	.	+	.	Parent=Os11t0248466-00
Chr11	irgsp1_rep	three_prime_UTR	8026410	8027072	.	+	.	Parent=Os11t0248466-00
Chr11	irgsp1_rep	mRNA	8072537	8078086	.	+	.	ID=Os11t0249000-01;Name=Os11t0249000-01;Locus_id=Os11g0249000;CGSNL Gene Symbol=NLS1;CGSNL Gene Name=NECROTIC LEAF SHEATH 1;Oryzabase Gene Symbol Synonym(s)=OsNLS1;Oryzabase Gene Name Synonym(s)=necrotic leaf sheath 1;Note=NB-ARC domain containing protein.;Transcript_evidence=AK101707 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J033060J18;Oryzabase=22661;Expression=AK101707;TENOR=Os11t0249000-01;KEGG=Os11t0249000-01
Chr11	irgsp1_rep	five_prime_UTR	8072537	8072575	.	+	.	Parent=Os11t0249000-01
Chr11	irgsp1_rep	CDS	8072576	8073363	.	+	0	Parent=Os11t0249000-01
Chr11	irgsp1_rep	CDS	8075969	8077937	.	+	1	Parent=Os11t0249000-01
Chr11	irgsp1_rep	three_prime_UTR	8077938	8078086	.	+	.	Parent=Os11t0249000-01
Chr11	irgsp1_rep	mRNA	8082926	8084825	.	-	.	ID=Os11t0249300-01;Name=Os11t0249300-01;Locus_id=Os11g0249300;Note=Conserved hypothetical protein.;Transcript_evidence=AK060391 (DDBJ%2C Best hit);ORF_evidence=A3CA77 (UniProt);NIAS_FLcDNA=001-010-A02;Expression=AK060391;TENOR=Os11t0249300-01;KEGG=Os11t0249300-01
Chr11	irgsp1_rep	five_prime_UTR	8084566	8084825	.	-	.	Parent=Os11t0249300-01
Chr11	irgsp1_rep	CDS	8084499	8084565	.	-	0	Parent=Os11t0249300-01
Chr11	irgsp1_rep	CDS	8084292	8084407	.	-	2	Parent=Os11t0249300-01
Chr11	irgsp1_rep	CDS	8083087	8084136	.	-	0	Parent=Os11t0249300-01
Chr11	irgsp1_rep	three_prime_UTR	8082926	8083086	.	-	.	Parent=Os11t0249300-01
Chr11	irgsp1_rep	mRNA	8085126	8086522	.	-	.	ID=Os11t0249400-00;Name=Os11t0249400-00;Locus_id=Os11g0249400;Oryzabase Gene Symbol Synonym(s)=OsPGL12%2C PGL12;Oryzabase Gene Name Synonym(s)=Polygalacturonases-Like 12%2C PG-like 12;Note=Similar to Polygalacturonase family protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R7Z7 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);Oryzabase=22289;TENOR=Os11t0249400-00
Chr11	irgsp1_rep	CDS	8085768	8086522	.	-	0	Parent=Os11t0249400-00
Chr11	irgsp1_rep	CDS	8085435	8085690	.	-	1	Parent=Os11t0249400-00
Chr11	irgsp1_rep	CDS	8085126	8085374	.	-	0	Parent=Os11t0249400-00
Chr11	irgsp1_rep	mRNA	8090152	8091256	.	-	.	ID=Os11t0249600-01;Name=Os11t0249600-01;Locus_id=Os11g0249600;Oryzabase Gene Symbol Synonym(s)=OsPGL22%2C PGL22;Oryzabase Gene Name Synonym(s)=Polygalacturonases-Like 22%2C PG-like 22;Note=Similar to Polygalacturonase C (Fragment).;Transcript_evidence=AK109298 (DDBJ%2C Best hit);ORF_evidence=Q53JK9 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=002-188-D07;Oryzabase=22299;Expression=AK109298;TENOR=Os11t0249600-01;KEGG=Os11t0249600-01
Chr11	irgsp1_rep	CDS	8091185	8091256	.	-	0	Parent=Os11t0249600-01
Chr11	irgsp1_rep	CDS	8090514	8090741	.	-	0	Parent=Os11t0249600-01
Chr11	irgsp1_rep	three_prime_UTR	8090152	8090513	.	-	.	Parent=Os11t0249600-01
Chr11	irgsp1_rep	mRNA	8091204	8092134	.	+	.	ID=Os11t0249700-00;Name=Os11t0249700-00;Locus_id=Os11g0249700;Note=Hypothetical protein.;Transcript_evidence=tplb0028j17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0249700-00
Chr11	irgsp1_rep	five_prime_UTR	8091204	8091233	.	+	.	Parent=Os11t0249700-00
Chr11	irgsp1_rep	CDS	8091234	8091694	.	+	0	Parent=Os11t0249700-00
Chr11	irgsp1_rep	CDS	8091778	8091784	.	+	1	Parent=Os11t0249700-00
Chr11	irgsp1_rep	three_prime_UTR	8091785	8092134	.	+	.	Parent=Os11t0249700-00
Chr11	irgsp1_rep	mRNA	8096780	8099080	.	-	.	ID=Os11t0249800-00;Name=Os11t0249800-00;Locus_id=Os11g0249800;Note=Non-protein coding transcript.;Transcript_evidence=tplb0030m05 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os11t0249800-00
Chr11	irgsp1_rep	exon	8098080	8099080	.	-	.	Parent=Os11t0249800-00
Chr11	irgsp1_rep	exon	8096780	8097552	.	-	.	Parent=Os11t0249800-00
Chr11	irgsp1_rep	mRNA	8097055	8099539	.	+	.	ID=Os11t0249900-01;Name=Os11t0249900-01;Locus_id=Os11g0249900;Note=Protein kinase-like domain containing protein.;Transcript_evidence=AK073005 (DDBJ%2C Best hit);ORF_evidence=Q53JL7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J023150L22;Expression=AK073005;TENOR=Os11t0249900-01;KEGG=Os11t0249900-01
Chr11	irgsp1_rep	CDS	8097055	8097558	.	+	0	Parent=Os11t0249900-01
Chr11	irgsp1_rep	CDS	8098086	8099087	.	+	0	Parent=Os11t0249900-01
Chr11	irgsp1_rep	three_prime_UTR	8099088	8099539	.	+	.	Parent=Os11t0249900-01
Chr11	irgsp1_rep	mRNA	8098351	8099530	.	+	.	ID=Os11t0249900-02;Name=Os11t0249900-02;Locus_id=Os11g0249900;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=AK060377 (DDBJ%2C Best hit);ORF_evidence=Q53JL7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-009-D03;Expression=AK060377;TENOR=Os11t0249900-02;KEGG=Os11t0249900-02
Chr11	irgsp1_rep	five_prime_UTR	8098351	8098352	.	+	.	Parent=Os11t0249900-02
Chr11	irgsp1_rep	CDS	8098353	8099087	.	+	0	Parent=Os11t0249900-02
Chr11	irgsp1_rep	three_prime_UTR	8099088	8099530	.	+	.	Parent=Os11t0249900-02
Chr11	irgsp1_rep	mRNA	8100740	8105055	.	-	.	ID=Os11t0250000-01;Name=Os11t0250000-01;Locus_id=Os11g0250000;Oryzabase Gene Symbol Synonym(s)=RBS1%2C Rbs1;Oryzabase Gene Name Synonym(s)=RNA-binding and SPIN1-interacting 1%2C RNA-binding and SPIN1-interacting1;Note=Similar to RNA recognition motif family protein%2C expressed.;Transcript_evidence=AK243512 (DDBJ%2C Best hit);ORF_evidence=Q33B10 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),RNA recognition motif domain%2C eukaryote (IPR003954),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J100075C18;Oryzabase=17867;TENOR=Os11t0250000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	8105010	8105055	.	-	.	Parent=Os11t0250000-01
Chr11	irgsp1_rep	CDS	8104686	8105009	.	-	0	Parent=Os11t0250000-01
Chr11	irgsp1_rep	CDS	8104471	8104587	.	-	0	Parent=Os11t0250000-01
Chr11	irgsp1_rep	CDS	8104237	8104377	.	-	0	Parent=Os11t0250000-01
Chr11	irgsp1_rep	CDS	8103975	8104154	.	-	0	Parent=Os11t0250000-01
Chr11	irgsp1_rep	CDS	8101808	8102012	.	-	0	Parent=Os11t0250000-01
Chr11	irgsp1_rep	CDS	8101373	8101533	.	-	2	Parent=Os11t0250000-01
Chr11	irgsp1_rep	CDS	8101206	8101291	.	-	0	Parent=Os11t0250000-01
Chr11	irgsp1_rep	CDS	8101013	8101124	.	-	1	Parent=Os11t0250000-01
Chr11	irgsp1_rep	three_prime_UTR	8100740	8101012	.	-	.	Parent=Os11t0250000-01
Chr11	irgsp1_rep	mRNA	8100740	8105413	.	-	.	ID=Os11t0250000-02;Name=Os11t0250000-02;Locus_id=Os11g0250000;RAP-DB Gene Symbol Synonym(s)=RBS1%2C Rbs1;RAP-DB Gene Name Synonym(s)=RNA-binding and SPIN1-interacting 1%2C RNA-binding and SPIN1-interacting1;Oryzabase Gene Symbol Synonym(s)=RBS1%2C Rbs1;Oryzabase Gene Name Synonym(s)=RNA-binding and SPIN1-interacting 1%2C RNA-binding and SPIN1-interacting1;Note=Heterogeneous nuclear ribonucleoprotein (hnRNP) R-type protein%2C Flowering time regulation;Transcript_evidence=Inferred from literature;ORF_evidence=Q53JL6;GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=Nucleotide-binding alpha-beta plait domain (IPR012677),RNA recognition motif domain (IPR000504),RNA recognition motif domain%2C eukaryote (IPR003954);Manual Curation=March 7%2C 2016;Literature_PMID=24498057;Oryzabase=17867
Chr11	irgsp1_rep	five_prime_UTR	8105268	8105413	.	-	.	Parent=Os11t0250000-02
Chr11	irgsp1_rep	five_prime_UTR	8105082	8105097	.	-	.	Parent=Os11t0250000-02
Chr11	irgsp1_rep	CDS	8104686	8105081	.	-	0	Parent=Os11t0250000-02
Chr11	irgsp1_rep	CDS	8104471	8104587	.	-	0	Parent=Os11t0250000-02
Chr11	irgsp1_rep	CDS	8104237	8104377	.	-	0	Parent=Os11t0250000-02
Chr11	irgsp1_rep	CDS	8103975	8104154	.	-	0	Parent=Os11t0250000-02
Chr11	irgsp1_rep	CDS	8101808	8102012	.	-	0	Parent=Os11t0250000-02
Chr11	irgsp1_rep	CDS	8101373	8101533	.	-	2	Parent=Os11t0250000-02
Chr11	irgsp1_rep	CDS	8101206	8101291	.	-	0	Parent=Os11t0250000-02
Chr11	irgsp1_rep	CDS	8101013	8101124	.	-	1	Parent=Os11t0250000-02
Chr11	irgsp1_rep	three_prime_UTR	8100740	8101012	.	-	.	Parent=Os11t0250000-02
Chr11	irgsp1_rep	mRNA	8105859	8107337	.	+	.	ID=Os11t0250100-01;Name=Os11t0250100-01;Locus_id=Os11g0250100;Note=Conserved hypothetical protein.;Transcript_evidence=AK119926 (DDBJ%2C Best hit);ORF_evidence=Q53JL5 (UniProt);NIAS_FLcDNA=002-183-H04;TENOR=Os11t0250100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	8105859	8106105	.	+	.	Parent=Os11t0250100-01
Chr11	irgsp1_rep	CDS	8106106	8106432	.	+	0	Parent=Os11t0250100-01
Chr11	irgsp1_rep	three_prime_UTR	8106433	8107337	.	+	.	Parent=Os11t0250100-01
Chr11	irgsp1_rep	mRNA	8128595	8136876	.	-	.	ID=Os11t0250400-01;Name=Os11t0250400-01;Locus_id=Os11g0250400;Note=Conserved hypothetical protein.;Transcript_evidence=AK059968 (DDBJ%2C Best hit);ORF_evidence=Q53N04 (UniProt);NIAS_FLcDNA=006-211-G06;TENOR=Os11t0250400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	8136768	8136876	.	-	.	Parent=Os11t0250400-01
Chr11	irgsp1_rep	five_prime_UTR	8129264	8129420	.	-	.	Parent=Os11t0250400-01
Chr11	irgsp1_rep	CDS	8128979	8129263	.	-	0	Parent=Os11t0250400-01
Chr11	irgsp1_rep	three_prime_UTR	8128595	8128978	.	-	.	Parent=Os11t0250400-01
Chr11	irgsp1_rep	mRNA	8131669	8132190	.	-	.	ID=Os11t0250600-00;Name=Os11t0250600-00;Locus_id=Os11g0250600;Note=Similar to cDNA clone:001-115-E06%2C full insert sequence.;Transcript_evidence=ab initio prediction;ORF_evidence=B7E8K4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);TENOR=Os11t0250600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	8131669	8132190	.	-	0	Parent=Os11t0250600-00
Chr11	irgsp1_rep	mRNA	8139798	8140173	.	-	.	ID=Os11t0250900-00;Name=Os11t0250900-00;Locus_id=Os11g0250900;Note=Conserved hypothetical protein.;Transcript_evidence=EU972838 (DDBJ);ORF_evidence=NP_001054897.2 (RefSeq);TENOR=Os11t0250900-00
Chr11	irgsp1_rep	CDS	8139964	8140173	.	-	0	Parent=Os11t0250900-00
Chr11	irgsp1_rep	three_prime_UTR	8139798	8139963	.	-	.	Parent=Os11t0250900-00
Chr11	irgsp1_rep	mRNA	8153700	8157517	.	-	.	ID=Os11t0251200-00;Name=Os11t0251200-00;Locus_id=Os11g0251200;Note=Ankyrin repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9GA75 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);TENOR=Os11t0251200-00
Chr11	irgsp1_rep	CDS	8156956	8157517	.	-	0	Parent=Os11t0251200-00
Chr11	irgsp1_rep	CDS	8156318	8156844	.	-	2	Parent=Os11t0251200-00
Chr11	irgsp1_rep	CDS	8154916	8155340	.	-	0	Parent=Os11t0251200-00
Chr11	irgsp1_rep	CDS	8153700	8154360	.	-	1	Parent=Os11t0251200-00
Chr11	irgsp1_rep	mRNA	8158799	8159426	.	-	.	ID=Os11t0251250-01;Name=Os11t0251250-01;Locus_id=Os11g0251250;Note=Conserved hypothetical protein.;Transcript_evidence=AK243502 (DDBJ%2C Best hit);ORF_evidence=NP_001176461.1 (RefSeq);NIAS_FLcDNA=J100074J18;TENOR=Os11t0251250-01;KEGG=Os11t0251250-01
Chr11	irgsp1_rep	five_prime_UTR	8159335	8159426	.	-	.	Parent=Os11t0251250-01
Chr11	irgsp1_rep	CDS	8159065	8159334	.	-	0	Parent=Os11t0251250-01
Chr11	irgsp1_rep	three_prime_UTR	8158799	8159064	.	-	.	Parent=Os11t0251250-01
Chr11	irgsp1_rep	mRNA	8165633	8170110	.	-	.	ID=Os11t0251400-01;Name=Os11t0251400-01;Locus_id=Os11g0251400;Note=Hypothetical conserved gene.;Transcript_evidence=AK063436 (DDBJ%2C Best hit);ORF_evidence=B8BJX4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=001-115-E06;Expression=AK063436;TENOR=Os11t0251400-01;KEGG=Os11t0251400-01
Chr11	irgsp1_rep	five_prime_UTR	8169739	8170110	.	-	.	Parent=Os11t0251400-01
Chr11	irgsp1_rep	five_prime_UTR	8168857	8169200	.	-	.	Parent=Os11t0251400-01
Chr11	irgsp1_rep	five_prime_UTR	8166516	8166577	.	-	.	Parent=Os11t0251400-01
Chr11	irgsp1_rep	CDS	8165844	8166515	.	-	0	Parent=Os11t0251400-01
Chr11	irgsp1_rep	three_prime_UTR	8165633	8165843	.	-	.	Parent=Os11t0251400-01
Chr11	irgsp1_rep	mRNA	8163352	8169942	.	-	.	ID=Os11t0251400-02;Name=Os11t0251400-02;Locus_id=Os11g0251400;Note=Ankyrin repeat containing protein.;Transcript_evidence=AK099053 (DDBJ%2C Best hit);ORF_evidence=B7E8K4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J013147L18;Expression=AK099053;TENOR=Os11t0251400-02;KEGG=Os11t0251400-02
Chr11	irgsp1_rep	five_prime_UTR	8169739	8169942	.	-	.	Parent=Os11t0251400-02
Chr11	irgsp1_rep	five_prime_UTR	8168857	8169200	.	-	.	Parent=Os11t0251400-02
Chr11	irgsp1_rep	five_prime_UTR	8166516	8166577	.	-	.	Parent=Os11t0251400-02
Chr11	irgsp1_rep	CDS	8165891	8166515	.	-	0	Parent=Os11t0251400-02
Chr11	irgsp1_rep	CDS	8165066	8165595	.	-	2	Parent=Os11t0251400-02
Chr11	irgsp1_rep	CDS	8163572	8164171	.	-	0	Parent=Os11t0251400-02
Chr11	irgsp1_rep	three_prime_UTR	8163352	8163571	.	-	.	Parent=Os11t0251400-02
Chr11	irgsp1_rep	mRNA	8163434	8165598	.	-	.	ID=Os11t0251400-03;Name=Os11t0251400-03;Locus_id=Os11g0251400;Note=Hypothetical conserved gene.;Transcript_evidence=AK070413 (DDBJ%2C Best hit);ORF_evidence=B8BJX4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J023052G13;TENOR=Os11t0251400-03
Chr11	irgsp1_rep	five_prime_UTR	8165597	8165598	.	-	.	Parent=Os11t0251400-03
Chr11	irgsp1_rep	CDS	8165066	8165596	.	-	0	Parent=Os11t0251400-03
Chr11	irgsp1_rep	CDS	8163572	8164171	.	-	0	Parent=Os11t0251400-03
Chr11	irgsp1_rep	three_prime_UTR	8163434	8163571	.	-	.	Parent=Os11t0251400-03
Chr11	irgsp1_rep	mRNA	8163424	8165524	.	-	.	ID=Os11t0251400-04;Name=Os11t0251400-04;Locus_id=Os11g0251400;Note=Ankyrin repeat domain containing protein.;Transcript_evidence=AK104835 (DDBJ%2C Best hit);ORF_evidence=B8BJX4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=001-042-C07;TENOR=Os11t0251400-04
Chr11	irgsp1_rep	CDS	8165066	8165524	.	-	0	Parent=Os11t0251400-04
Chr11	irgsp1_rep	CDS	8163572	8164171	.	-	0	Parent=Os11t0251400-04
Chr11	irgsp1_rep	three_prime_UTR	8163424	8163571	.	-	.	Parent=Os11t0251400-04
Chr11	irgsp1_rep	mRNA	8198422	8201961	.	-	.	ID=Os11t0252400-01;Name=Os11t0252400-01;Locus_id=Os11g0252400;Note=Ankyrin repeat containing protein.;Transcript_evidence=AK065745 (DDBJ%2C Best hit);ORF_evidence=A2WTY2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J013041F08;Expression=AK065745;TENOR=Os11t0252400-01;KEGG=Os11t0252400-01
Chr11	irgsp1_rep	five_prime_UTR	8201654	8201961	.	-	.	Parent=Os11t0252400-01
Chr11	irgsp1_rep	five_prime_UTR	8201343	8201568	.	-	.	Parent=Os11t0252400-01
Chr11	irgsp1_rep	five_prime_UTR	8201153	8201189	.	-	.	Parent=Os11t0252400-01
Chr11	irgsp1_rep	CDS	8200591	8201152	.	-	0	Parent=Os11t0252400-01
Chr11	irgsp1_rep	CDS	8199860	8200404	.	-	2	Parent=Os11t0252400-01
Chr11	irgsp1_rep	CDS	8198515	8199108	.	-	0	Parent=Os11t0252400-01
Chr11	irgsp1_rep	three_prime_UTR	8198422	8198514	.	-	.	Parent=Os11t0252400-01
Chr11	irgsp1_rep	mRNA	8199698	8201898	.	-	.	ID=Os11t0252400-02;Name=Os11t0252400-02;Locus_id=Os11g0252400;Note=Hypothetical conserved gene.;Transcript_evidence=AK072808 (DDBJ%2C Best hit);ORF_evidence=Q53N01 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J023140C10;Expression=AK072808;TENOR=Os11t0252400-02;KEGG=Os11t0252400-02
Chr11	irgsp1_rep	five_prime_UTR	8201654	8201898	.	-	.	Parent=Os11t0252400-02
Chr11	irgsp1_rep	five_prime_UTR	8201343	8201568	.	-	.	Parent=Os11t0252400-02
Chr11	irgsp1_rep	five_prime_UTR	8201153	8201172	.	-	.	Parent=Os11t0252400-02
Chr11	irgsp1_rep	CDS	8200591	8201152	.	-	0	Parent=Os11t0252400-02
Chr11	irgsp1_rep	CDS	8199845	8200404	.	-	2	Parent=Os11t0252400-02
Chr11	irgsp1_rep	three_prime_UTR	8199698	8199844	.	-	.	Parent=Os11t0252400-02
Chr11	irgsp1_rep	mRNA	8198320	8201115	.	-	.	ID=Os11t0252400-03;Name=Os11t0252400-03;Locus_id=Os11g0252400;Note=Hypothetical conserved gene.;Transcript_evidence=AK069670 (DDBJ%2C Best hit);ORF_evidence=A2WTY2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J023026P09;Expression=AK069670;TENOR=Os11t0252400-03;KEGG=Os11t0252400-03
Chr11	irgsp1_rep	five_prime_UTR	8201114	8201115	.	-	.	Parent=Os11t0252400-03
Chr11	irgsp1_rep	CDS	8200591	8201113	.	-	0	Parent=Os11t0252400-03
Chr11	irgsp1_rep	CDS	8199860	8200404	.	-	2	Parent=Os11t0252400-03
Chr11	irgsp1_rep	CDS	8198515	8199108	.	-	0	Parent=Os11t0252400-03
Chr11	irgsp1_rep	three_prime_UTR	8198320	8198514	.	-	.	Parent=Os11t0252400-03
Chr11	irgsp1_rep	mRNA	8243782	8248342	.	-	.	ID=Os11t0253100-00;Name=Os11t0253100-00;Locus_id=Os11g0253100;Note=Ankyrin repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q53N04 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);TENOR=Os11t0253100-00
Chr11	irgsp1_rep	CDS	8247616	8248342	.	-	0	Parent=Os11t0253100-00
Chr11	irgsp1_rep	CDS	8247004	8247536	.	-	2	Parent=Os11t0253100-00
Chr11	irgsp1_rep	CDS	8243782	8244378	.	-	0	Parent=Os11t0253100-00
Chr11	irgsp1_rep	mRNA	8373820	8374488	.	+	.	ID=Os11t0255200-01;Name=Os11t0255200-01;Locus_id=Os11g0255200;Note=Hypothetical conserved gene.;Transcript_evidence=AK242160 (DDBJ%2C Best hit);ORF_evidence=NP_001176463.1 (RefSeq);NIAS_FLcDNA=J075155O06;TENOR=Os11t0255200-01;KEGG=Os11t0255200-01
Chr11	irgsp1_rep	five_prime_UTR	8373820	8373872	.	+	.	Parent=Os11t0255200-01
Chr11	irgsp1_rep	CDS	8373873	8374223	.	+	0	Parent=Os11t0255200-01
Chr11	irgsp1_rep	CDS	8374345	8374356	.	+	0	Parent=Os11t0255200-01
Chr11	irgsp1_rep	three_prime_UTR	8374357	8374488	.	+	.	Parent=Os11t0255200-01
Chr11	irgsp1_rep	mRNA	8379344	8382036	.	-	.	ID=Os11t0255300-01;Name=Os11t0255300-01;Locus_id=Os11g0255300;Oryzabase Gene Symbol Synonym(s)=OsCP1;Oryzabase Gene Name Synonym(s)=Cysteine protease 1;Note=Cysteine endopeptidase (Cysteine proteinase (EC 3.4.22.-)-rice).;Transcript_evidence=AK071495 (DDBJ%2C Best hit);ORF_evidence=Q40675 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase%2C cysteine peptidase active site (IPR000169),Peptidase C1A%2C papain C-terminal (IPR000668),Peptidase C1A%2C papain (IPR013128),Proteinase inhibitor I29%2C cathepsin propeptide (IPR013201);NIAS_FLcDNA=J023099K03;Oryzabase=11565;Expression=AK071495;TENOR=Os11t0255300-01;KEGG=Os11t0255300-01
Chr11	irgsp1_rep	five_prime_UTR	8381955	8382036	.	-	.	Parent=Os11t0255300-01
Chr11	irgsp1_rep	five_prime_UTR	8381791	8381806	.	-	.	Parent=Os11t0255300-01
Chr11	irgsp1_rep	CDS	8381298	8381790	.	-	0	Parent=Os11t0255300-01
Chr11	irgsp1_rep	CDS	8380438	8380673	.	-	2	Parent=Os11t0255300-01
Chr11	irgsp1_rep	CDS	8380043	8380183	.	-	0	Parent=Os11t0255300-01
Chr11	irgsp1_rep	CDS	8379618	8379884	.	-	0	Parent=Os11t0255300-01
Chr11	irgsp1_rep	three_prime_UTR	8379344	8379617	.	-	.	Parent=Os11t0255300-01
Chr11	irgsp1_rep	mRNA	8387770	8389759	.	-	.	ID=Os11t0255500-01;Name=Os11t0255500-01;Locus_id=Os11g0255500;Note=Similar to Allyl alcohol dehydrogenase%3B NADP-dependent oxidoreductase-like protein.;Transcript_evidence=AK110615 (DDBJ%2C Best hit);ORF_evidence=NP_001152093.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=002-168-H08;Expression=AK110615;TENOR=Os11t0255500-01;KEGG=Os11t0255500-01 (EC:1.3.1.74)
Chr11	irgsp1_rep	five_prime_UTR	8389696	8389759	.	-	.	Parent=Os11t0255500-01
Chr11	irgsp1_rep	CDS	8389426	8389695	.	-	0	Parent=Os11t0255500-01
Chr11	irgsp1_rep	CDS	8388663	8388840	.	-	0	Parent=Os11t0255500-01
Chr11	irgsp1_rep	CDS	8387904	8388535	.	-	2	Parent=Os11t0255500-01
Chr11	irgsp1_rep	three_prime_UTR	8387770	8387903	.	-	.	Parent=Os11t0255500-01
Chr11	irgsp1_rep	mRNA	8402220	8405323	.	-	.	ID=Os11t0255800-00;Name=Os11t0255800-00;Locus_id=Os11g0255800;Note=Conserved hypothetical protein.;Transcript_evidence=CT841924 (DDBJ%2C Secondary hit);ORF_evidence=Q53L23 (UniProt);TENOR=Os11t0255800-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	8405021	8405323	.	-	.	Parent=Os11t0255800-00
Chr11	irgsp1_rep	CDS	8404686	8405020	.	-	0	Parent=Os11t0255800-00
Chr11	irgsp1_rep	CDS	8403322	8403328	.	-	1	Parent=Os11t0255800-00
Chr11	irgsp1_rep	three_prime_UTR	8403088	8403321	.	-	.	Parent=Os11t0255800-00
Chr11	irgsp1_rep	three_prime_UTR	8402842	8402984	.	-	.	Parent=Os11t0255800-00
Chr11	irgsp1_rep	three_prime_UTR	8402615	8402733	.	-	.	Parent=Os11t0255800-00
Chr11	irgsp1_rep	three_prime_UTR	8402404	8402437	.	-	.	Parent=Os11t0255800-00
Chr11	irgsp1_rep	three_prime_UTR	8402220	8402386	.	-	.	Parent=Os11t0255800-00
Chr11	irgsp1_rep	mRNA	8417487	8418892	.	-	.	ID=Os11t0256000-01;Name=Os11t0256000-01;Locus_id=Os11g0256000;Note=Hypothetical conserved gene.;Transcript_evidence=AK240846 (DDBJ%2C Best hit);ORF_evidence=NP_001067632.2 (RefSeq);GO=Biological Process: branched chain family amino acid biosynthetic process (GO:0009082),Molecular Function: acetolactate synthase activity (GO:0003984);InterPro=Acetolactate synthase%2C small subunit (IPR004789),Acetolactate synthase%2C small subunit%2C C-terminal (IPR019455);NIAS_FLcDNA=J065019G09;TENOR=Os11t0256000-01;KEGG=Os11t0256000-01
Chr11	irgsp1_rep	five_prime_UTR	8418892	8418892	.	-	.	Parent=Os11t0256000-01
Chr11	irgsp1_rep	CDS	8418715	8418891	.	-	0	Parent=Os11t0256000-01
Chr11	irgsp1_rep	CDS	8417950	8418015	.	-	0	Parent=Os11t0256000-01
Chr11	irgsp1_rep	CDS	8417745	8417828	.	-	0	Parent=Os11t0256000-01
Chr11	irgsp1_rep	three_prime_UTR	8417487	8417744	.	-	.	Parent=Os11t0256000-01
Chr11	irgsp1_rep	mRNA	8420069	8422716	.	-	.	ID=Os11t0256050-00;Name=Os11t0256050-00;Locus_id=Os11g0256050;Note=Hypothetical conserved gene.;Transcript_evidence=CT836574 (DDBJ%2C Best hit);ORF_evidence=Q53L28 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: branched chain family amino acid biosynthetic process (GO:0009082),Molecular Function: acetolactate synthase activity (GO:0003984),Molecular Function: amino acid binding (GO:0016597);InterPro=Amino acid-binding ACT (IPR002912),Acetolactate synthase%2C small subunit (IPR004789),Acetolactate synthase%2C small subunit%2C C-terminal (IPR019455);TENOR=Os11t0256050-00;KEGG=Os11t0256050-00 (EC:2.2.1.6)
Chr11	irgsp1_rep	five_prime_UTR	8422676	8422716	.	-	.	Parent=Os11t0256050-00
Chr11	irgsp1_rep	CDS	8422470	8422675	.	-	0	Parent=Os11t0256050-00
Chr11	irgsp1_rep	CDS	8421272	8421488	.	-	1	Parent=Os11t0256050-00
Chr11	irgsp1_rep	CDS	8421058	8421141	.	-	0	Parent=Os11t0256050-00
Chr11	irgsp1_rep	CDS	8420688	8420756	.	-	0	Parent=Os11t0256050-00
Chr11	irgsp1_rep	CDS	8420505	8420588	.	-	0	Parent=Os11t0256050-00
Chr11	irgsp1_rep	CDS	8420262	8420420	.	-	0	Parent=Os11t0256050-00
Chr11	irgsp1_rep	three_prime_UTR	8420069	8420261	.	-	.	Parent=Os11t0256050-00
Chr11	irgsp1_rep	mRNA	8438075	8438408	.	-	.	ID=Os11t0256075-00;Name=Os11t0256075-00;Locus_id=Os11g0256075;Note=Non-protein coding transcript.;Transcript_evidence=EU951447 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0256075-00
Chr11	irgsp1_rep	exon	8438075	8438408	.	-	.	Parent=Os11t0256075-00
Chr11	irgsp1_rep	mRNA	8439729	8441556	.	-	.	ID=Os11t0256100-00;Name=Os11t0256100-00;Locus_id=Os11g0256100;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=BT083476 (DDBJ);ORF_evidence=NP_001067633.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os11t0256100-00;KEGG=Os11t0256100-00
Chr11	irgsp1_rep	CDS	8439808	8441556	.	-	0	Parent=Os11t0256100-00
Chr11	irgsp1_rep	three_prime_UTR	8439729	8439807	.	-	.	Parent=Os11t0256100-00
Chr11	irgsp1_rep	mRNA	8443220	8446079	.	-	.	ID=Os11t0256200-01;Name=Os11t0256200-01;Locus_id=Os11g0256200;Note=Protein of unknown function DUF842%2C eukaryotic family protein.;Transcript_evidence=AK107906 (DDBJ%2C Best hit);ORF_evidence=Q9SYL4 (UniProt);InterPro=Protein of unknown function DUF842%2C eukaryotic (IPR008560);NIAS_FLcDNA=002-134-G01;Expression=AK107906;TENOR=Os11t0256200-01;KEGG=Os11t0256200-01
Chr11	irgsp1_rep	five_prime_UTR	8445955	8446079	.	-	.	Parent=Os11t0256200-01
Chr11	irgsp1_rep	CDS	8445826	8445954	.	-	0	Parent=Os11t0256200-01
Chr11	irgsp1_rep	CDS	8444648	8444785	.	-	0	Parent=Os11t0256200-01
Chr11	irgsp1_rep	CDS	8443480	8443659	.	-	0	Parent=Os11t0256200-01
Chr11	irgsp1_rep	three_prime_UTR	8443220	8443479	.	-	.	Parent=Os11t0256200-01
Chr11	irgsp1_rep	mRNA	8446426	8447369	.	+	.	ID=Os11t0256300-01;Name=Os11t0256300-01;Locus_id=Os11g0256300;Note=Zinc finger%2C GRF-type domain containing protein.;Transcript_evidence=AK066271 (DDBJ%2C Best hit);ORF_evidence=Q7XDU8 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C GRF-type (IPR010666);NIAS_FLcDNA=J013060L21;Expression=AK066271;TENOR=Os11t0256300-01;KEGG=Os11t0256300-01
Chr11	irgsp1_rep	five_prime_UTR	8446426	8446669	.	+	.	Parent=Os11t0256300-01
Chr11	irgsp1_rep	CDS	8446670	8446861	.	+	0	Parent=Os11t0256300-01
Chr11	irgsp1_rep	CDS	8446932	8447075	.	+	0	Parent=Os11t0256300-01
Chr11	irgsp1_rep	three_prime_UTR	8447076	8447369	.	+	.	Parent=Os11t0256300-01
Chr11	irgsp1_rep	mRNA	8447633	8449580	.	-	.	ID=Os11t0256400-01;Name=Os11t0256400-01;Locus_id=Os11g0256400;Note=Zinc finger%2C SWIM-type domain containing protein.;Transcript_evidence=AK120007 (DDBJ%2C Best hit);ORF_evidence=Q53L33 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);NIAS_FLcDNA=002-186-A06;Expression=AK120007;TENOR=Os11t0256400-01;KEGG=Os11t0256400-01
Chr11	irgsp1_rep	five_prime_UTR	8449579	8449580	.	-	.	Parent=Os11t0256400-01
Chr11	irgsp1_rep	CDS	8449363	8449578	.	-	0	Parent=Os11t0256400-01
Chr11	irgsp1_rep	CDS	8448397	8449275	.	-	0	Parent=Os11t0256400-01
Chr11	irgsp1_rep	three_prime_UTR	8448178	8448396	.	-	.	Parent=Os11t0256400-01
Chr11	irgsp1_rep	three_prime_UTR	8447633	8448094	.	-	.	Parent=Os11t0256400-01
Chr11	irgsp1_rep	mRNA	8457135	8460242	.	+	.	ID=Os11t0256600-00;Name=Os11t0256600-00;Locus_id=Os11g0256600;Oryzabase Gene Name Synonym(s)=SABATH methyltransferase Group A2;Note=Similar to Benzothiadiazole-induced S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase 1.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6QUV7 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=SAM dependent carboxyl methyltransferase (IPR005299);Oryzabase=23385;TENOR=Os11t0256600-00
Chr11	irgsp1_rep	CDS	8457135	8457212	.	+	0	Parent=Os11t0256600-00
Chr11	irgsp1_rep	CDS	8457897	8458313	.	+	0	Parent=Os11t0256600-00
Chr11	irgsp1_rep	CDS	8458416	8458679	.	+	0	Parent=Os11t0256600-00
Chr11	irgsp1_rep	CDS	8459838	8460242	.	+	0	Parent=Os11t0256600-00
Chr11	irgsp1_rep	mRNA	8466832	8469347	.	+	.	ID=Os11t0256900-01;Name=Os11t0256900-01;Locus_id=Os11g0256900;Note=SAM dependent carboxyl methyltransferase family protein.;Transcript_evidence=AK068035 (DDBJ%2C Best hit);ORF_evidence=Q6QUV7 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=SAM dependent carboxyl methyltransferase (IPR005299);NIAS_FLcDNA=J013129H19;Expression=AK068035;TENOR=Os11t0256900-01;KEGG=Os11t0256900-01
Chr11	irgsp1_rep	five_prime_UTR	8466832	8466922	.	+	.	Parent=Os11t0256900-01
Chr11	irgsp1_rep	CDS	8466923	8466997	.	+	0	Parent=Os11t0256900-01
Chr11	irgsp1_rep	CDS	8467312	8467719	.	+	0	Parent=Os11t0256900-01
Chr11	irgsp1_rep	three_prime_UTR	8467720	8467728	.	+	.	Parent=Os11t0256900-01
Chr11	irgsp1_rep	three_prime_UTR	8467841	8468104	.	+	.	Parent=Os11t0256900-01
Chr11	irgsp1_rep	three_prime_UTR	8468828	8469347	.	+	.	Parent=Os11t0256900-01
Chr11	irgsp1_rep	mRNA	8529786	8531343	.	+	.	ID=Os11t0257700-00;Name=Os11t0257700-00;Locus_id=Os11g0257700;Oryzabase Gene Name Synonym(s)=SABATH methyltransferase Group A2;Note=Similar to SAM dependent carboxyl methyltransferase.;Transcript_evidence=AK357310 (DDBJ);ORF_evidence=Q53L59 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=SAM dependent carboxyl methyltransferase (IPR005299);Oryzabase=23386;TENOR=Os11t0257700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	8529786	8530048	.	+	.	Parent=Os11t0257700-00
Chr11	irgsp1_rep	CDS	8530049	8530204	.	+	0	Parent=Os11t0257700-00
Chr11	irgsp1_rep	CDS	8530296	8530559	.	+	0	Parent=Os11t0257700-00
Chr11	irgsp1_rep	CDS	8531071	8531343	.	+	0	Parent=Os11t0257700-00
Chr11	irgsp1_rep	mRNA	8532272	8554283	.	-	.	ID=Os11t0257800-01;Name=Os11t0257800-01;Locus_id=Os11g0257800;Note=Hypothetical protein.;Transcript_evidence=AK069487 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023023F21;Expression=AK069487;TENOR=Os11t0257800-01;KEGG=Os11t0257800-01
Chr11	irgsp1_rep	five_prime_UTR	8553624	8554283	.	-	.	Parent=Os11t0257800-01
Chr11	irgsp1_rep	five_prime_UTR	8553482	8553492	.	-	.	Parent=Os11t0257800-01
Chr11	irgsp1_rep	CDS	8553297	8553481	.	-	0	Parent=Os11t0257800-01
Chr11	irgsp1_rep	CDS	8532592	8532646	.	-	1	Parent=Os11t0257800-01
Chr11	irgsp1_rep	three_prime_UTR	8532272	8532591	.	-	.	Parent=Os11t0257800-01
Chr11	irgsp1_rep	mRNA	8552637	8554154	.	-	.	ID=Os11t0257800-02;Name=Os11t0257800-02;Locus_id=Os11g0257800;Note=Conserved hypothetical protein.;Transcript_evidence=AK065695 (DDBJ%2C Best hit);ORF_evidence=Q6K788 (UniProt);NIAS_FLcDNA=J013037P18;Expression=AK065695;TENOR=Os11t0257800-02;KEGG=Os11t0257800-02
Chr11	irgsp1_rep	five_prime_UTR	8553624	8554154	.	-	.	Parent=Os11t0257800-02
Chr11	irgsp1_rep	five_prime_UTR	8553105	8553492	.	-	.	Parent=Os11t0257800-02
Chr11	irgsp1_rep	CDS	8552826	8553104	.	-	0	Parent=Os11t0257800-02
Chr11	irgsp1_rep	three_prime_UTR	8552637	8552825	.	-	.	Parent=Os11t0257800-02
Chr11	irgsp1_rep	mRNA	8567230	8572839	.	+	.	ID=Os11t0258400-01;Name=Os11t0258400-01;Locus_id=Os11g0258400;Note=Hypothetical protein.;Transcript_evidence=AK066086 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013052B16;Expression=AK066086;TENOR=Os11t0258400-01;KEGG=Os11t0258400-01
Chr11	irgsp1_rep	five_prime_UTR	8567230	8567524	.	+	.	Parent=Os11t0258400-01
Chr11	irgsp1_rep	five_prime_UTR	8568789	8569165	.	+	.	Parent=Os11t0258400-01
Chr11	irgsp1_rep	five_prime_UTR	8569244	8569851	.	+	.	Parent=Os11t0258400-01
Chr11	irgsp1_rep	five_prime_UTR	8571477	8572000	.	+	.	Parent=Os11t0258400-01
Chr11	irgsp1_rep	CDS	8572001	8572267	.	+	0	Parent=Os11t0258400-01
Chr11	irgsp1_rep	three_prime_UTR	8572268	8572839	.	+	.	Parent=Os11t0258400-01
Chr11	irgsp1_rep	mRNA	8568422	8572176	.	-	.	ID=Os11t0258500-00;Name=Os11t0258500-00;Locus_id=Os11g0258500;Note=Disease resistance protein domain containing protein.;Transcript_evidence=AK369772 (DDBJ);ORF_evidence=NP_001067640.1 (RefSeq);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os11t0258500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	8571320	8572176	.	-	0	Parent=Os11t0258500-00
Chr11	irgsp1_rep	CDS	8568422	8570477	.	-	1	Parent=Os11t0258500-00
Chr11	irgsp1_rep	mRNA	8583891	8587507	.	-	.	ID=Os11t0258700-00;Name=Os11t0258700-00;Locus_id=Os11g0258700;Oryzabase Gene Symbol Synonym(s)=OsbHLH014;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 014;Note=Similar to Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q53L62 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);Oryzabase=15306;TENOR=Os11t0258700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	8587370	8587507	.	-	0	Parent=Os11t0258700-00
Chr11	irgsp1_rep	CDS	8585948	8586007	.	-	0	Parent=Os11t0258700-00
Chr11	irgsp1_rep	CDS	8584787	8585445	.	-	0	Parent=Os11t0258700-00
Chr11	irgsp1_rep	CDS	8583891	8584485	.	-	1	Parent=Os11t0258700-00
Chr11	irgsp1_rep	mRNA	8597091	8598972	.	-	.	ID=Os11t0258900-01;Name=Os11t0258900-01;Locus_id=Os11g0258900;Note=Conserved hypothetical protein.;Transcript_evidence=AK102638 (DDBJ%2C Best hit);ORF_evidence=Q8S7C9 (UniProt);NIAS_FLcDNA=J033099P04;TENOR=Os11t0258900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	8597664	8598972	.	-	.	Parent=Os11t0258900-01
Chr11	irgsp1_rep	CDS	8597421	8597663	.	-	0	Parent=Os11t0258900-01
Chr11	irgsp1_rep	three_prime_UTR	8597091	8597420	.	-	.	Parent=Os11t0258900-01
Chr11	irgsp1_rep	mRNA	8648863	8650862	.	+	.	ID=Os11t0259700-01;Name=Os11t0259700-01;Locus_id=Os11g0259700;Oryzabase Gene Name Synonym(s)=SABATH methyltransferase Group A2;Note=Similar to SAM dependent carboxyl methyltransferase family protein.;Transcript_evidence=AK243534 (DDBJ%2C Best hit);ORF_evidence=Q53L53 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=SAM dependent carboxyl methyltransferase (IPR005299);NIAS_FLcDNA=J100077K19;Oryzabase=23387;TENOR=Os11t0259700-01;KEGG=Os11t0259700-01
Chr11	irgsp1_rep	five_prime_UTR	8648863	8648931	.	+	.	Parent=Os11t0259700-01
Chr11	irgsp1_rep	CDS	8648932	8649006	.	+	0	Parent=Os11t0259700-01
Chr11	irgsp1_rep	CDS	8649406	8649828	.	+	0	Parent=Os11t0259700-01
Chr11	irgsp1_rep	CDS	8649968	8650234	.	+	0	Parent=Os11t0259700-01
Chr11	irgsp1_rep	CDS	8650399	8650800	.	+	0	Parent=Os11t0259700-01
Chr11	irgsp1_rep	three_prime_UTR	8650801	8650862	.	+	.	Parent=Os11t0259700-01
Chr11	irgsp1_rep	mRNA	8677314	8678820	.	+	.	ID=Os11t0260100-00;Name=Os11t0260100-00;Locus_id=Os11g0260100;Note=SAM dependent carboxyl methyltransferase family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001067646.1 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=SAM dependent carboxyl methyltransferase (IPR005299);TENOR=Os11t0260100-00;KEGG=Os11t0260100-00
Chr11	irgsp1_rep	CDS	8677314	8677388	.	+	0	Parent=Os11t0260100-00
Chr11	irgsp1_rep	CDS	8677701	8678123	.	+	0	Parent=Os11t0260100-00
Chr11	irgsp1_rep	CDS	8678416	8678820	.	+	0	Parent=Os11t0260100-00
Chr11	irgsp1_rep	mRNA	8702363	8704999	.	-	.	ID=Os11t0260200-00;Name=Os11t0260200-00;Locus_id=Os11g0260200;Note=Similar to Sulfotransferase domain containing protein%2C expressed.;Transcript_evidence=AK248347 (DDBJ);ORF_evidence=Q33AD7 (UniProt);GO=Molecular Function: sulfotransferase activity (GO:0008146);InterPro=Sulfotransferase domain (IPR000863);TENOR=Os11t0260200-00;KEGG=Os11t0260200-00
Chr11	irgsp1_rep	CDS	8704422	8704999	.	-	0	Parent=Os11t0260200-00
Chr11	irgsp1_rep	CDS	8702685	8702901	.	-	1	Parent=Os11t0260200-00
Chr11	irgsp1_rep	three_prime_UTR	8702363	8702684	.	-	.	Parent=Os11t0260200-00
Chr11	irgsp1_rep	mRNA	8780025	8782973	.	-	.	ID=Os11t0261300-00;Name=Os11t0261300-00;Locus_id=Os11g0261300;Note=Hypothetical protein.;Transcript_evidence=tplb0040n12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0261300-00
Chr11	irgsp1_rep	five_prime_UTR	8782831	8782973	.	-	.	Parent=Os11t0261300-00
Chr11	irgsp1_rep	CDS	8782519	8782830	.	-	0	Parent=Os11t0261300-00
Chr11	irgsp1_rep	three_prime_UTR	8780973	8782518	.	-	.	Parent=Os11t0261300-00
Chr11	irgsp1_rep	three_prime_UTR	8780025	8780810	.	-	.	Parent=Os11t0261300-00
Chr11	irgsp1_rep	mRNA	8784187	8786064	.	-	.	ID=Os11t0261500-00;Name=Os11t0261500-00;Locus_id=Os11g0261500;Note=Hypothetical conserved gene.;Transcript_evidence=AK330974 (DDBJ);ORF_evidence=Q53KN9 (UniProt);TENOR=Os11t0261500-00;KEGG=Os11t0261500-00
Chr11	irgsp1_rep	CDS	8785189	8786064	.	-	0	Parent=Os11t0261500-00
Chr11	irgsp1_rep	three_prime_UTR	8784420	8785188	.	-	.	Parent=Os11t0261500-00
Chr11	irgsp1_rep	three_prime_UTR	8784187	8784359	.	-	.	Parent=Os11t0261500-00
Chr11	irgsp1_rep	mRNA	8794993	8796864	.	-	.	ID=Os11t0261600-01;Name=Os11t0261600-01;Locus_id=Os11g0261600;Oryzabase Gene Symbol Synonym(s)=OsSub62%2C SUB62;Oryzabase Gene Name Synonym(s)=Subtilisin 62%2C SUBTILISIN 62;Note=Similar to Subtilisin-like serine proteinase.;Transcript_evidence=AK110921 (DDBJ%2C Best hit);ORF_evidence=Q53KN8 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C His-active site (IPR022398);NIAS_FLcDNA=002-173-D02;Oryzabase=20146;Expression=AK110921;TENOR=Os11t0261600-01;KEGG=Os11t0261600-01
Chr11	irgsp1_rep	five_prime_UTR	8796398	8796864	.	-	.	Parent=Os11t0261600-01
Chr11	irgsp1_rep	CDS	8796388	8796397	.	-	0	Parent=Os11t0261600-01
Chr11	irgsp1_rep	CDS	8795161	8795795	.	-	2	Parent=Os11t0261600-01
Chr11	irgsp1_rep	three_prime_UTR	8794993	8795160	.	-	.	Parent=Os11t0261600-01
Chr11	irgsp1_rep	mRNA	8826309	8827815	.	+	.	ID=Os11t0261900-01;Name=Os11t0261900-01;Locus_id=Os11g0261900;Note=Metallophosphoesterase domain containing protein.;Transcript_evidence=AK107273 (DDBJ%2C Best hit);ORF_evidence=NP_564053.1 (RefSeq);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Metallophosphoesterase domain (IPR004843);NIAS_FLcDNA=002-126-A02;Expression=AK107273;TENOR=Os11t0261900-01;KEGG=Os11t0261900-01
Chr11	irgsp1_rep	five_prime_UTR	8826309	8826363	.	+	.	Parent=Os11t0261900-01
Chr11	irgsp1_rep	CDS	8826364	8827623	.	+	0	Parent=Os11t0261900-01
Chr11	irgsp1_rep	three_prime_UTR	8827624	8827815	.	+	.	Parent=Os11t0261900-01
Chr11	irgsp1_rep	mRNA	8839965	8843061	.	-	.	ID=Os11t0262200-00;Name=Os11t0262200-00;Locus_id=Os11g0262200;Note=Hypothetical conserved gene.;Transcript_evidence=CT841924 (DDBJ%2C Best hit);ORF_evidence=Q53L23 (UniProt);TENOR=Os11t0262200-00;KEGG=Os11t0262200-00
Chr11	irgsp1_rep	five_prime_UTR	8842769	8843061	.	-	.	Parent=Os11t0262200-00
Chr11	irgsp1_rep	CDS	8842487	8842768	.	-	0	Parent=Os11t0262200-00
Chr11	irgsp1_rep	three_prime_UTR	8842431	8842486	.	-	.	Parent=Os11t0262200-00
Chr11	irgsp1_rep	three_prime_UTR	8840833	8841073	.	-	.	Parent=Os11t0262200-00
Chr11	irgsp1_rep	three_prime_UTR	8840586	8840729	.	-	.	Parent=Os11t0262200-00
Chr11	irgsp1_rep	three_prime_UTR	8840359	8840477	.	-	.	Parent=Os11t0262200-00
Chr11	irgsp1_rep	three_prime_UTR	8840148	8840181	.	-	.	Parent=Os11t0262200-00
Chr11	irgsp1_rep	three_prime_UTR	8839965	8840130	.	-	.	Parent=Os11t0262200-00
Chr11	irgsp1_rep	mRNA	8860655	8862772	.	+	.	ID=Os11t0262500-00;Name=Os11t0262500-00;Locus_id=Os11g0262500;Oryzabase Gene Symbol Synonym(s)=OsFbox597%2C Os_F0447;Oryzabase Gene Name Synonym(s)=F-box protein 597;Note=Similar to F-box domain containing protein.;Transcript_evidence=tplb0021p16 (Wheat FLcDNA);ORF_evidence=Q53KQ4 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);Oryzabase=17360;TENOR=Os11t0262500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	8860655	8860684	.	+	.	Parent=Os11t0262500-00
Chr11	irgsp1_rep	CDS	8860685	8861566	.	+	0	Parent=Os11t0262500-00
Chr11	irgsp1_rep	CDS	8862251	8862406	.	+	0	Parent=Os11t0262500-00
Chr11	irgsp1_rep	CDS	8862506	8862772	.	+	0	Parent=Os11t0262500-00
Chr11	irgsp1_rep	mRNA	8864479	8866289	.	-	.	ID=Os11t0262600-00;Name=Os11t0262600-00;Locus_id=Os11g0262600;Note=Conserved hypothetical protein.;Transcript_evidence=AB053296 (DDBJ%2C Best hit);ORF_evidence=NP_001176056.1 (RefSeq);Expression=AB053296;TENOR=Os11t0262600-00;KEGG=Os11t0262600-00
Chr11	irgsp1_rep	five_prime_UTR	8866278	8866289	.	-	.	Parent=Os11t0262600-00
Chr11	irgsp1_rep	CDS	8866243	8866277	.	-	0	Parent=Os11t0262600-00
Chr11	irgsp1_rep	CDS	8864879	8865044	.	-	1	Parent=Os11t0262600-00
Chr11	irgsp1_rep	three_prime_UTR	8864479	8864878	.	-	.	Parent=Os11t0262600-00
Chr11	irgsp1_rep	mRNA	8883111	8899578	.	-	.	ID=Os11t0263000-00;Name=Os11t0263000-00;Locus_id=Os11g0263000;Note=Similar to Leucine Rich Repeat family protein%2C expressed.;Transcript_evidence=AJ507097 (DDBJ);ORF_evidence=Q53KP9 (UniProt);Oryzabase=20235;TENOR=Os11t0263000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	8898235	8899578	.	-	.	Parent=Os11t0263000-00
Chr11	irgsp1_rep	five_prime_UTR	8885799	8886229	.	-	.	Parent=Os11t0263000-00
Chr11	irgsp1_rep	CDS	8883111	8885798	.	-	0	Parent=Os11t0263000-00
Chr11	irgsp1_rep	mRNA	8926357	8926893	.	+	.	ID=Os11t0263466-00;Name=Os11t0263466-00;Locus_id=Os11g0263466;Note=Non-protein coding transcript.;Transcript_evidence=EU950895 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0263466-00
Chr11	irgsp1_rep	exon	8926357	8926660	.	+	.	Parent=Os11t0263466-00
Chr11	irgsp1_rep	exon	8926760	8926893	.	+	.	Parent=Os11t0263466-00
Chr11	irgsp1_rep	mRNA	8948990	8951125	.	-	.	ID=Os11t0264000-00;Name=Os11t0264000-00;Locus_id=Os11g0264000;CGSNL Gene Symbol=LAC22;CGSNL Gene Name=LACCASE 22;Oryzabase Gene Symbol Synonym(s)=OsLAC22;Oryzabase Gene Name Synonym(s)=laccase 22;Note=Cupredoxin domain containing protein.;Transcript_evidence=A2XCN6 (UniProt);ORF_evidence=A2XCN6 (UniProt);GO=Biological Process: lignin catabolic process (GO:0046274),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: apoplast (GO:0048046),Molecular Function: copper ion binding (GO:0005507),Molecular Function: laccase activity (GO:0008471),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Multicopper oxidase%2C type 1 (IPR001117),Multicopper oxidase%2C copper-binding site (IPR002355),Cupredoxin (IPR008972),Multicopper oxidase%2C type 2 (IPR011706),Multicopper oxidase%2C type 3 (IPR011707),Laccase (IPR017761);Oryzabase=21619;TENOR=Os11t0264000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	8950621	8951125	.	-	0	Parent=Os11t0264000-00
Chr11	irgsp1_rep	CDS	8949371	8950498	.	-	2	Parent=Os11t0264000-00
Chr11	irgsp1_rep	CDS	8948990	8949144	.	-	2	Parent=Os11t0264000-00
Chr11	irgsp1_rep	mRNA	8965406	8970029	.	+	.	ID=Os11t0264200-01;Name=Os11t0264200-01;Locus_id=Os11g0264200;Oryzabase Gene Symbol Synonym(s)=OsFbox598%2C Os_F0672;Oryzabase Gene Name Synonym(s)=F-box protein 598;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK100924 (DDBJ%2C Best hit),AK100855 (DDBJ%2C Best hit),AK100912 (DDBJ%2C Best hit);ORF_evidence=A2ZD60 (UniProt);InterPro=Leucine-rich repeat%2C cysteine-containing subtype (IPR006553);NIAS_FLcDNA=J023134E03,J023123K21,J023132O20;Oryzabase=17361;Expression=AK100924;TENOR=Os11t0264200-01;KEGG=Os11t0264200-01
Chr11	irgsp1_rep	five_prime_UTR	8965406	8965597	.	+	.	Parent=Os11t0264200-01
Chr11	irgsp1_rep	five_prime_UTR	8967973	8968354	.	+	.	Parent=Os11t0264200-01
Chr11	irgsp1_rep	CDS	8968355	8969500	.	+	0	Parent=Os11t0264200-01
Chr11	irgsp1_rep	three_prime_UTR	8969501	8970029	.	+	.	Parent=Os11t0264200-01
Chr11	irgsp1_rep	mRNA	8975041	8977440	.	-	.	ID=Os11t0264300-01;Name=Os11t0264300-01;Locus_id=Os11g0264300;CGSNL Gene Symbol=NLP5;CGSNL Gene Name=NIN-LIKE PROTEIN 5;Oryzabase Gene Symbol Synonym(s)=OsNLP5%2C NLP5.1%2C NLP5.2%2C NLP5.3%2C NLP5.4%2C NLP5.5;Oryzabase Gene Name Synonym(s)=OsNIN-like4%2C OsNIN-like 4%2C NIN-like4%2C NIN-like 4%2C NLP transcription factor 5%2C NODULE INCEPTION-like protein 5;Note=Similar to RWP-RK domain containing protein%2C expressed.;Transcript_evidence=AK110967 (DDBJ%2C Best hit);ORF_evidence=Q2R7K6 (UniProt);NIAS_FLcDNA=002-174-B07;Oryzabase=21543;Expression=AK110967;TENOR=Os11t0264300-01;KEGG=Os11t0264300-01
Chr11	irgsp1_rep	five_prime_UTR	8977314	8977440	.	-	.	Parent=Os11t0264300-01
Chr11	irgsp1_rep	five_prime_UTR	8977113	8977206	.	-	.	Parent=Os11t0264300-01
Chr11	irgsp1_rep	CDS	8976315	8977112	.	-	0	Parent=Os11t0264300-01
Chr11	irgsp1_rep	CDS	8975635	8975676	.	-	0	Parent=Os11t0264300-01
Chr11	irgsp1_rep	three_prime_UTR	8975591	8975634	.	-	.	Parent=Os11t0264300-01
Chr11	irgsp1_rep	three_prime_UTR	8975041	8975487	.	-	.	Parent=Os11t0264300-01
Chr11	irgsp1_rep	mRNA	8970147	8977435	.	-	.	ID=Os11t0264300-02;Name=Os11t0264300-02;Locus_id=Os11g0264300;CGSNL Gene Symbol=NLP5;CGSNL Gene Name=NIN-LIKE PROTEIN 5;Oryzabase Gene Symbol Synonym(s)=OsNLP5%2C NLP5.1%2C NLP5.2%2C NLP5.3%2C NLP5.4%2C NLP5.5;Oryzabase Gene Name Synonym(s)=OsNIN-like4%2C OsNIN-like 4%2C NIN-like4%2C NIN-like 4%2C NLP transcription factor 5%2C NODULE INCEPTION-like protein 5;Note=Similar to RWP-RK domain containing protein%2C expressed.;Transcript_evidence=AK064859 (DDBJ%2C Best hit);ORF_evidence=Q2R7K6 (UniProt);NIAS_FLcDNA=J013000H14;Oryzabase=21543;TENOR=Os11t0264300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	8977314	8977435	.	-	.	Parent=Os11t0264300-02
Chr11	irgsp1_rep	five_prime_UTR	8977113	8977206	.	-	.	Parent=Os11t0264300-02
Chr11	irgsp1_rep	CDS	8976315	8977112	.	-	0	Parent=Os11t0264300-02
Chr11	irgsp1_rep	CDS	8973963	8974010	.	-	0	Parent=Os11t0264300-02
Chr11	irgsp1_rep	three_prime_UTR	8973516	8973962	.	-	.	Parent=Os11t0264300-02
Chr11	irgsp1_rep	three_prime_UTR	8973013	8973054	.	-	.	Parent=Os11t0264300-02
Chr11	irgsp1_rep	three_prime_UTR	8972192	8972935	.	-	.	Parent=Os11t0264300-02
Chr11	irgsp1_rep	three_prime_UTR	8971533	8971659	.	-	.	Parent=Os11t0264300-02
Chr11	irgsp1_rep	three_prime_UTR	8971121	8971342	.	-	.	Parent=Os11t0264300-02
Chr11	irgsp1_rep	three_prime_UTR	8970147	8971047	.	-	.	Parent=Os11t0264300-02
Chr11	irgsp1_rep	mRNA	8972034	8977429	.	-	.	ID=Os11t0264300-03;Name=Os11t0264300-03;Locus_id=Os11g0264300;CGSNL Gene Symbol=NLP5;CGSNL Gene Name=NIN-LIKE PROTEIN 5;Oryzabase Gene Symbol Synonym(s)=OsNLP5%2C NLP5.1%2C NLP5.2%2C NLP5.3%2C NLP5.4%2C NLP5.5;Oryzabase Gene Name Synonym(s)=OsNIN-like4%2C OsNIN-like 4%2C NIN-like4%2C NIN-like 4%2C NLP transcription factor 5%2C NODULE INCEPTION-like protein 5;Note=Similar to RWP-RK domain containing protein%2C expressed.;Transcript_evidence=AK068456 (DDBJ%2C Best hit);ORF_evidence=Q2R7K6 (UniProt);NIAS_FLcDNA=J013152E20;Oryzabase=21543;Expression=AK068456;TENOR=Os11t0264300-03;KEGG=Os11t0264300-03
Chr11	irgsp1_rep	five_prime_UTR	8977314	8977429	.	-	.	Parent=Os11t0264300-03
Chr11	irgsp1_rep	five_prime_UTR	8977113	8977206	.	-	.	Parent=Os11t0264300-03
Chr11	irgsp1_rep	CDS	8976315	8977112	.	-	0	Parent=Os11t0264300-03
Chr11	irgsp1_rep	CDS	8973963	8974010	.	-	0	Parent=Os11t0264300-03
Chr11	irgsp1_rep	three_prime_UTR	8973013	8973962	.	-	.	Parent=Os11t0264300-03
Chr11	irgsp1_rep	three_prime_UTR	8972034	8972935	.	-	.	Parent=Os11t0264300-03
Chr11	irgsp1_rep	mRNA	8990256	8994514	.	+	.	ID=Os11t0264500-00;Name=Os11t0264500-00;Locus_id=Os11g0264500;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001067653.1 (RefSeq);TENOR=Os11t0264500-00
Chr11	irgsp1_rep	CDS	8990256	8990275	.	+	0	Parent=Os11t0264500-00
Chr11	irgsp1_rep	CDS	8991394	8991486	.	+	1	Parent=Os11t0264500-00
Chr11	irgsp1_rep	CDS	8992535	8992793	.	+	1	Parent=Os11t0264500-00
Chr11	irgsp1_rep	CDS	8992911	8992969	.	+	0	Parent=Os11t0264500-00
Chr11	irgsp1_rep	CDS	8993227	8993449	.	+	1	Parent=Os11t0264500-00
Chr11	irgsp1_rep	CDS	8993544	8993690	.	+	0	Parent=Os11t0264500-00
Chr11	irgsp1_rep	CDS	8994059	8994514	.	+	0	Parent=Os11t0264500-00
Chr11	irgsp1_rep	mRNA	9000489	9004988	.	+	.	ID=Os11t0264600-01;Name=Os11t0264600-01;Locus_id=Os11g0264600;Note=Conserved hypothetical protein.;Transcript_evidence=AK243552 (DDBJ%2C Best hit);ORF_evidence=A2ZD65 (UniProt);NIAS_FLcDNA=J100079I22;TENOR=Os11t0264600-01;KEGG=Os11t0264600-01
Chr11	irgsp1_rep	five_prime_UTR	9000489	9000542	.	+	.	Parent=Os11t0264600-01
Chr11	irgsp1_rep	CDS	9000543	9000872	.	+	0	Parent=Os11t0264600-01
Chr11	irgsp1_rep	CDS	9001784	9001846	.	+	0	Parent=Os11t0264600-01
Chr11	irgsp1_rep	CDS	9001952	9002047	.	+	0	Parent=Os11t0264600-01
Chr11	irgsp1_rep	CDS	9002650	9002697	.	+	0	Parent=Os11t0264600-01
Chr11	irgsp1_rep	CDS	9003284	9003355	.	+	0	Parent=Os11t0264600-01
Chr11	irgsp1_rep	CDS	9004099	9004157	.	+	0	Parent=Os11t0264600-01
Chr11	irgsp1_rep	CDS	9004308	9004398	.	+	1	Parent=Os11t0264600-01
Chr11	irgsp1_rep	CDS	9004475	9004612	.	+	0	Parent=Os11t0264600-01
Chr11	irgsp1_rep	three_prime_UTR	9004613	9004988	.	+	.	Parent=Os11t0264600-01
Chr11	irgsp1_rep	mRNA	9006410	9010706	.	-	.	ID=Os11t0264700-01;Name=Os11t0264700-01;Locus_id=Os11g0264700;Oryzabase Gene Symbol Synonym(s)=OsFbox599;Oryzabase Gene Name Synonym(s)=F-box protein 599;Note=ApaG domain containing protein.;Transcript_evidence=AK071935 (DDBJ%2C Best hit),AK103706 (DDBJ%2C Best hit);ORF_evidence=Q2R7K1 (UniProt);InterPro=ApaG domain (IPR007474);NIAS_FLcDNA=J013078F24,J033136N20;Oryzabase=17362;Expression=AK071935;TENOR=Os11t0264700-01;KEGG=Os11t0264700-01
Chr11	irgsp1_rep	five_prime_UTR	9010628	9010706	.	-	.	Parent=Os11t0264700-01
Chr11	irgsp1_rep	CDS	9010382	9010627	.	-	0	Parent=Os11t0264700-01
Chr11	irgsp1_rep	CDS	9009536	9010216	.	-	0	Parent=Os11t0264700-01
Chr11	irgsp1_rep	CDS	9007183	9007398	.	-	0	Parent=Os11t0264700-01
Chr11	irgsp1_rep	CDS	9006937	9007043	.	-	0	Parent=Os11t0264700-01
Chr11	irgsp1_rep	CDS	9006596	9006674	.	-	1	Parent=Os11t0264700-01
Chr11	irgsp1_rep	three_prime_UTR	9006410	9006595	.	-	.	Parent=Os11t0264700-01
Chr11	irgsp1_rep	mRNA	9009271	9010691	.	-	.	ID=Os11t0264700-03;Name=Os11t0264700-03;Locus_id=Os11g0264700;Oryzabase Gene Symbol Synonym(s)=OsFbox599;Oryzabase Gene Name Synonym(s)=F-box protein 599;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK110777 (DDBJ%2C Best hit);ORF_evidence=Q2R7K1 (UniProt);NIAS_FLcDNA=002-171-B07;Oryzabase=17362;Expression=AK110777;TENOR=Os11t0264700-03;KEGG=Os11t0264700-03
Chr11	irgsp1_rep	five_prime_UTR	9010628	9010691	.	-	.	Parent=Os11t0264700-03
Chr11	irgsp1_rep	CDS	9010382	9010627	.	-	0	Parent=Os11t0264700-03
Chr11	irgsp1_rep	CDS	9009494	9010216	.	-	0	Parent=Os11t0264700-03
Chr11	irgsp1_rep	three_prime_UTR	9009271	9009493	.	-	.	Parent=Os11t0264700-03
Chr11	irgsp1_rep	mRNA	9022284	9022910	.	-	.	ID=Os11t0264900-00;Name=Os11t0264900-00;Locus_id=Os11g0264900;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001067656.1 (RefSeq);TENOR=Os11t0264900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	9022284	9022910	.	-	0	Parent=Os11t0264900-00
Chr11	irgsp1_rep	mRNA	9023123	9023339	.	-	.	ID=Os11t0264950-00;Name=Os11t0264950-00;Locus_id=Os11g0264950;Note=Hypothetical protein.;Transcript_evidence=EU947580 (DDBJ);ORF_evidence=GeneMark;TENOR=Os11t0264950-00
Chr11	irgsp1_rep	CDS	9023123	9023339	.	-	0	Parent=Os11t0264950-00
Chr11	irgsp1_rep	mRNA	9034222	9042630	.	+	.	ID=Os11t0265000-01;Name=Os11t0265000-01;Locus_id=Os11g0265000;Note=Uridine kinase family protein.;Transcript_evidence=AK103877 (DDBJ%2C Best hit);ORF_evidence=D7UAT7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: nucleoside metabolic process (GO:0009116),Molecular Function: ATP binding (GO:0005524),Molecular Function: kinase activity (GO:0016301),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Uridine kinase (IPR000764),Phosphoribosyltransferase (IPR000836),Phosphoribulokinase/uridine kinase (IPR006083);NIAS_FLcDNA=J033149N02;Expression=AK103877;TENOR=Os11t0265000-01;KEGG=Os11t0265000-01
Chr11	irgsp1_rep	five_prime_UTR	9034222	9034373	.	+	.	Parent=Os11t0265000-01
Chr11	irgsp1_rep	five_prime_UTR	9034740	9034755	.	+	.	Parent=Os11t0265000-01
Chr11	irgsp1_rep	CDS	9034756	9034924	.	+	0	Parent=Os11t0265000-01
Chr11	irgsp1_rep	CDS	9035060	9035151	.	+	2	Parent=Os11t0265000-01
Chr11	irgsp1_rep	CDS	9036425	9036494	.	+	0	Parent=Os11t0265000-01
Chr11	irgsp1_rep	CDS	9036582	9036697	.	+	2	Parent=Os11t0265000-01
Chr11	irgsp1_rep	CDS	9037776	9037872	.	+	0	Parent=Os11t0265000-01
Chr11	irgsp1_rep	CDS	9038691	9038770	.	+	2	Parent=Os11t0265000-01
Chr11	irgsp1_rep	CDS	9038924	9039118	.	+	0	Parent=Os11t0265000-01
Chr11	irgsp1_rep	CDS	9039274	9039357	.	+	0	Parent=Os11t0265000-01
Chr11	irgsp1_rep	CDS	9039435	9039495	.	+	0	Parent=Os11t0265000-01
Chr11	irgsp1_rep	CDS	9040256	9040316	.	+	2	Parent=Os11t0265000-01
Chr11	irgsp1_rep	CDS	9040749	9040842	.	+	1	Parent=Os11t0265000-01
Chr11	irgsp1_rep	CDS	9040914	9040986	.	+	0	Parent=Os11t0265000-01
Chr11	irgsp1_rep	CDS	9041299	9041381	.	+	2	Parent=Os11t0265000-01
Chr11	irgsp1_rep	CDS	9041967	9042157	.	+	0	Parent=Os11t0265000-01
Chr11	irgsp1_rep	CDS	9042289	9042298	.	+	1	Parent=Os11t0265000-01
Chr11	irgsp1_rep	three_prime_UTR	9042299	9042630	.	+	.	Parent=Os11t0265000-01
Chr11	irgsp1_rep	mRNA	9034753	9042430	.	-	.	ID=Os11t0265100-00;Name=Os11t0265100-00;Locus_id=Os11g0265100;Note=Hypothetical protein.;Transcript_evidence=tplb0046c01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0265100-00
Chr11	irgsp1_rep	five_prime_UTR	9042301	9042430	.	-	.	Parent=Os11t0265100-00
Chr11	irgsp1_rep	five_prime_UTR	9041950	9042169	.	-	.	Parent=Os11t0265100-00
Chr11	irgsp1_rep	five_prime_UTR	9041282	9041366	.	-	.	Parent=Os11t0265100-00
Chr11	irgsp1_rep	five_prime_UTR	9040926	9040976	.	-	.	Parent=Os11t0265100-00
Chr11	irgsp1_rep	five_prime_UTR	9040713	9040854	.	-	.	Parent=Os11t0265100-00
Chr11	irgsp1_rep	CDS	9040693	9040712	.	-	0	Parent=Os11t0265100-00
Chr11	irgsp1_rep	CDS	9039434	9039492	.	-	1	Parent=Os11t0265100-00
Chr11	irgsp1_rep	CDS	9039278	9039356	.	-	2	Parent=Os11t0265100-00
Chr11	irgsp1_rep	CDS	9039029	9039122	.	-	1	Parent=Os11t0265100-00
Chr11	irgsp1_rep	three_prime_UTR	9038922	9039028	.	-	.	Parent=Os11t0265100-00
Chr11	irgsp1_rep	three_prime_UTR	9038688	9038761	.	-	.	Parent=Os11t0265100-00
Chr11	irgsp1_rep	three_prime_UTR	9037774	9037869	.	-	.	Parent=Os11t0265100-00
Chr11	irgsp1_rep	three_prime_UTR	9036595	9036695	.	-	.	Parent=Os11t0265100-00
Chr11	irgsp1_rep	three_prime_UTR	9036422	9036509	.	-	.	Parent=Os11t0265100-00
Chr11	irgsp1_rep	three_prime_UTR	9035059	9035148	.	-	.	Parent=Os11t0265100-00
Chr11	irgsp1_rep	three_prime_UTR	9034753	9034923	.	-	.	Parent=Os11t0265100-00
Chr11	irgsp1_rep	mRNA	9055846	9059363	.	-	.	ID=Os11t0265200-00;Name=Os11t0265200-00;Locus_id=Os11g0265200;Note=Similar to F-box-containing protein 2.;Transcript_evidence=CT835663 (DDBJ%2C Best hit);ORF_evidence=B2LUR0 (UniProt);InterPro=ApaG domain (IPR007474),Cell wall assembly/cell proliferation coordinating protein%2C KNR4-like (IPR018958);TENOR=Os11t0265200-00;KEGG=Os11t0265200-00
Chr11	irgsp1_rep	five_prime_UTR	9059273	9059363	.	-	.	Parent=Os11t0265200-00
Chr11	irgsp1_rep	CDS	9059018	9059272	.	-	0	Parent=Os11t0265200-00
Chr11	irgsp1_rep	CDS	9056917	9057633	.	-	0	Parent=Os11t0265200-00
Chr11	irgsp1_rep	CDS	9056426	9056641	.	-	0	Parent=Os11t0265200-00
Chr11	irgsp1_rep	CDS	9056211	9056317	.	-	0	Parent=Os11t0265200-00
Chr11	irgsp1_rep	CDS	9056003	9056081	.	-	1	Parent=Os11t0265200-00
Chr11	irgsp1_rep	three_prime_UTR	9055846	9056002	.	-	.	Parent=Os11t0265200-00
Chr11	irgsp1_rep	mRNA	9073778	9078781	.	+	.	ID=Os11t0265400-01;Name=Os11t0265400-01;Locus_id=Os11g0265400;Note=Glucose/ribitol dehydrogenase family protein.;Transcript_evidence=AK102327 (DDBJ%2C Best hit);ORF_evidence=B6T753 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Polyketide synthase/Fatty acid synthase%2C KR (IPR020842),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);NIAS_FLcDNA=J033090L02;Expression=AK102327;TENOR=Os11t0265400-01;KEGG=Os11t0265400-01
Chr11	irgsp1_rep	five_prime_UTR	9073778	9073924	.	+	.	Parent=Os11t0265400-01
Chr11	irgsp1_rep	CDS	9073925	9074003	.	+	0	Parent=Os11t0265400-01
Chr11	irgsp1_rep	CDS	9074126	9074181	.	+	2	Parent=Os11t0265400-01
Chr11	irgsp1_rep	CDS	9074300	9074333	.	+	0	Parent=Os11t0265400-01
Chr11	irgsp1_rep	CDS	9075323	9075421	.	+	2	Parent=Os11t0265400-01
Chr11	irgsp1_rep	CDS	9075535	9075683	.	+	2	Parent=Os11t0265400-01
Chr11	irgsp1_rep	CDS	9075870	9075908	.	+	0	Parent=Os11t0265400-01
Chr11	irgsp1_rep	CDS	9075992	9076084	.	+	0	Parent=Os11t0265400-01
Chr11	irgsp1_rep	CDS	9076174	9076272	.	+	0	Parent=Os11t0265400-01
Chr11	irgsp1_rep	CDS	9076889	9076990	.	+	0	Parent=Os11t0265400-01
Chr11	irgsp1_rep	CDS	9077422	9077505	.	+	0	Parent=Os11t0265400-01
Chr11	irgsp1_rep	CDS	9077898	9077963	.	+	0	Parent=Os11t0265400-01
Chr11	irgsp1_rep	CDS	9078587	9078673	.	+	0	Parent=Os11t0265400-01
Chr11	irgsp1_rep	three_prime_UTR	9078674	9078781	.	+	.	Parent=Os11t0265400-01
Chr11	irgsp1_rep	mRNA	9076194	9078681	.	-	.	ID=Os11t0265450-00;Name=Os11t0265450-00;Locus_id=Os11g0265450;Note=Non-protein coding transcript.;Transcript_evidence=BT016950 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0265450-00
Chr11	irgsp1_rep	exon	9078549	9078681	.	-	.	Parent=Os11t0265450-00
Chr11	irgsp1_rep	exon	9077426	9077523	.	-	.	Parent=Os11t0265450-00
Chr11	irgsp1_rep	exon	9076875	9077008	.	-	.	Parent=Os11t0265450-00
Chr11	irgsp1_rep	exon	9076194	9076260	.	-	.	Parent=Os11t0265450-00
Chr11	irgsp1_rep	mRNA	9079181	9085404	.	-	.	ID=Os11t0265500-01;Name=Os11t0265500-01;Locus_id=Os11g0265500;Note=Similar to ProFAR isomerase associated family protein%2C expressed.;Transcript_evidence=AK063462 (DDBJ%2C Best hit);ORF_evidence=Q53LS7 (UniProt);NIAS_FLcDNA=001-115-H03;TENOR=Os11t0265500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	9085365	9085404	.	-	.	Parent=Os11t0265500-01
Chr11	irgsp1_rep	CDS	9085014	9085364	.	-	0	Parent=Os11t0265500-01
Chr11	irgsp1_rep	CDS	9083253	9083301	.	-	0	Parent=Os11t0265500-01
Chr11	irgsp1_rep	CDS	9082686	9082744	.	-	2	Parent=Os11t0265500-01
Chr11	irgsp1_rep	three_prime_UTR	9082312	9082685	.	-	.	Parent=Os11t0265500-01
Chr11	irgsp1_rep	three_prime_UTR	9081415	9081533	.	-	.	Parent=Os11t0265500-01
Chr11	irgsp1_rep	three_prime_UTR	9080884	9081009	.	-	.	Parent=Os11t0265500-01
Chr11	irgsp1_rep	three_prime_UTR	9080656	9080693	.	-	.	Parent=Os11t0265500-01
Chr11	irgsp1_rep	three_prime_UTR	9080414	9080568	.	-	.	Parent=Os11t0265500-01
Chr11	irgsp1_rep	three_prime_UTR	9079181	9079474	.	-	.	Parent=Os11t0265500-01
Chr11	irgsp1_rep	mRNA	9089560	9094771	.	+	.	ID=Os11t0265600-00;Name=Os11t0265600-00;Locus_id=Os11g0265600;Note=Similar to predicted protein.;Transcript_evidence=BT054554 (DDBJ);ORF_evidence=Q53LS8 (UniProt);GO=Biological Process: peptidyl-diphthamide biosynthetic process from peptidyl-histidine (GO:0017183),Cellular Component: cytoplasm (GO:0005737);InterPro=Diphthamide synthesis%2C DPH1/DHP2 (IPR002728),Diphthamide synthesis%2C DHP2 (IPR010014);TENOR=Os11t0265600-00;KEGG=Os11t0265600-00
Chr11	irgsp1_rep	five_prime_UTR	9089560	9089577	.	+	.	Parent=Os11t0265600-00
Chr11	irgsp1_rep	CDS	9089578	9089664	.	+	0	Parent=Os11t0265600-00
Chr11	irgsp1_rep	CDS	9089782	9089969	.	+	0	Parent=Os11t0265600-00
Chr11	irgsp1_rep	CDS	9090413	9090521	.	+	1	Parent=Os11t0265600-00
Chr11	irgsp1_rep	CDS	9091174	9091558	.	+	0	Parent=Os11t0265600-00
Chr11	irgsp1_rep	CDS	9091966	9092035	.	+	2	Parent=Os11t0265600-00
Chr11	irgsp1_rep	CDS	9092136	9092203	.	+	1	Parent=Os11t0265600-00
Chr11	irgsp1_rep	CDS	9093735	9093850	.	+	2	Parent=Os11t0265600-00
Chr11	irgsp1_rep	CDS	9093937	9094043	.	+	0	Parent=Os11t0265600-00
Chr11	irgsp1_rep	CDS	9094214	9094353	.	+	1	Parent=Os11t0265600-00
Chr11	irgsp1_rep	CDS	9094520	9094770	.	+	2	Parent=Os11t0265600-00
Chr11	irgsp1_rep	three_prime_UTR	9094771	9094771	.	+	.	Parent=Os11t0265600-00
Chr11	irgsp1_rep	mRNA	9089573	9094777	.	-	.	ID=Os11t0265650-00;Name=Os11t0265650-00;Locus_id=Os11g0265650;Note=Hypothetical protein.;Transcript_evidence=tplb0049g13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0265650-00
Chr11	irgsp1_rep	five_prime_UTR	9094518	9094777	.	-	.	Parent=Os11t0265650-00
Chr11	irgsp1_rep	five_prime_UTR	9094206	9094346	.	-	.	Parent=Os11t0265650-00
Chr11	irgsp1_rep	five_prime_UTR	9093734	9094033	.	-	.	Parent=Os11t0265650-00
Chr11	irgsp1_rep	five_prime_UTR	9092143	9092202	.	-	.	Parent=Os11t0265650-00
Chr11	irgsp1_rep	five_prime_UTR	9091979	9092040	.	-	.	Parent=Os11t0265650-00
Chr11	irgsp1_rep	five_prime_UTR	9091172	9091567	.	-	.	Parent=Os11t0265650-00
Chr11	irgsp1_rep	five_prime_UTR	9090484	9090518	.	-	.	Parent=Os11t0265650-00
Chr11	irgsp1_rep	CDS	9090413	9090483	.	-	0	Parent=Os11t0265650-00
Chr11	irgsp1_rep	CDS	9089798	9089969	.	-	1	Parent=Os11t0265650-00
Chr11	irgsp1_rep	three_prime_UTR	9089791	9089797	.	-	.	Parent=Os11t0265650-00
Chr11	irgsp1_rep	three_prime_UTR	9089573	9089673	.	-	.	Parent=Os11t0265650-00
Chr11	irgsp1_rep	mRNA	9098624	9099529	.	+	.	ID=Os11t0265800-00;Name=Os11t0265800-00;Locus_id=Os11g0265800;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0022b20 (Wheat FLcDNA);ORF_evidence=NP_001067662.2 (RefSeq);TENOR=Os11t0265800-00
Chr11	irgsp1_rep	CDS	9098624	9099529	.	+	0	Parent=Os11t0265800-00
Chr11	irgsp1_rep	mRNA	9104291	9106033	.	+	.	ID=Os11t0265850-00;Name=Os11t0265850-00;Locus_id=Os11g0265850;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9GA87 (UniProt);TENOR=Os11t0265850-00
Chr11	irgsp1_rep	CDS	9104291	9104434	.	+	0	Parent=Os11t0265850-00
Chr11	irgsp1_rep	CDS	9105731	9106033	.	+	0	Parent=Os11t0265850-00
Chr11	irgsp1_rep	mRNA	9108473	9112746	.	+	.	ID=Os11t0265900-01;Name=Os11t0265900-01;Locus_id=Os11g0265900;Note=Conserved hypothetical protein.;Transcript_evidence=AK066020 (DDBJ%2C Best hit);ORF_evidence=B9GA88 (UniProt);NIAS_FLcDNA=J013046N19;TENOR=Os11t0265900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	9108473	9108528	.	+	.	Parent=Os11t0265900-01
Chr11	irgsp1_rep	CDS	9108529	9108777	.	+	0	Parent=Os11t0265900-01
Chr11	irgsp1_rep	three_prime_UTR	9108778	9109261	.	+	.	Parent=Os11t0265900-01
Chr11	irgsp1_rep	three_prime_UTR	9109372	9109515	.	+	.	Parent=Os11t0265900-01
Chr11	irgsp1_rep	three_prime_UTR	9109600	9110432	.	+	.	Parent=Os11t0265900-01
Chr11	irgsp1_rep	three_prime_UTR	9110513	9112746	.	+	.	Parent=Os11t0265900-01
Chr11	irgsp1_rep	mRNA	9109503	9112744	.	+	.	ID=Os11t0265900-02;Name=Os11t0265900-02;Locus_id=Os11g0265900;Note=NB-ARC domain containing protein.;Transcript_evidence=AK064889 (DDBJ%2C Best hit),AK243028 (DDBJ%2C Best hit);ORF_evidence=B9GA88 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013000K14,J100003A13;Expression=AK064889;TENOR=Os11t0265900-02;KEGG=Os11t0265900-02
Chr11	irgsp1_rep	five_prime_UTR	9109503	9109605	.	+	.	Parent=Os11t0265900-02
Chr11	irgsp1_rep	CDS	9109606	9110432	.	+	0	Parent=Os11t0265900-02
Chr11	irgsp1_rep	CDS	9110513	9112460	.	+	1	Parent=Os11t0265900-02
Chr11	irgsp1_rep	three_prime_UTR	9112461	9112744	.	+	.	Parent=Os11t0265900-02
Chr11	irgsp1_rep	mRNA	9113889	9118446	.	-	.	ID=Os11t0266000-01;Name=Os11t0266000-01;Locus_id=Os11g0266000;Note=Protein of unknown function DUF1665 family protein.;Transcript_evidence=AK073284 (DDBJ%2C Best hit);ORF_evidence=A2ZD80 (UniProt);InterPro=Protein of unknown function DUF1665 (IPR012459);NIAS_FLcDNA=J033028G10;Expression=AK073284;TENOR=Os11t0266000-01;KEGG=Os11t0266000-01
Chr11	irgsp1_rep	five_prime_UTR	9118293	9118446	.	-	.	Parent=Os11t0266000-01
Chr11	irgsp1_rep	CDS	9117876	9118292	.	-	0	Parent=Os11t0266000-01
Chr11	irgsp1_rep	CDS	9117679	9117780	.	-	0	Parent=Os11t0266000-01
Chr11	irgsp1_rep	CDS	9117503	9117584	.	-	0	Parent=Os11t0266000-01
Chr11	irgsp1_rep	CDS	9117361	9117380	.	-	2	Parent=Os11t0266000-01
Chr11	irgsp1_rep	CDS	9116779	9116839	.	-	0	Parent=Os11t0266000-01
Chr11	irgsp1_rep	CDS	9116086	9116180	.	-	2	Parent=Os11t0266000-01
Chr11	irgsp1_rep	CDS	9114228	9114320	.	-	0	Parent=Os11t0266000-01
Chr11	irgsp1_rep	CDS	9114073	9114135	.	-	0	Parent=Os11t0266000-01
Chr11	irgsp1_rep	three_prime_UTR	9113889	9114072	.	-	.	Parent=Os11t0266000-01
Chr11	irgsp1_rep	mRNA	9144218	9150975	.	+	.	ID=Os11t0266500-01;Name=Os11t0266500-01;Locus_id=Os11g0266500;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=AK119293 (DDBJ%2C Best hit);ORF_evidence=Q53LZ6 (UniProt);NIAS_FLcDNA=001-130-D12;TENOR=Os11t0266500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	9144218	9144373	.	+	.	Parent=Os11t0266500-01
Chr11	irgsp1_rep	five_prime_UTR	9146399	9146402	.	+	.	Parent=Os11t0266500-01
Chr11	irgsp1_rep	CDS	9146403	9146909	.	+	0	Parent=Os11t0266500-01
Chr11	irgsp1_rep	three_prime_UTR	9146910	9147234	.	+	.	Parent=Os11t0266500-01
Chr11	irgsp1_rep	three_prime_UTR	9148593	9150464	.	+	.	Parent=Os11t0266500-01
Chr11	irgsp1_rep	three_prime_UTR	9150501	9150658	.	+	.	Parent=Os11t0266500-01
Chr11	irgsp1_rep	three_prime_UTR	9150751	9150975	.	+	.	Parent=Os11t0266500-01
Chr11	irgsp1_rep	mRNA	9144225	9146048	.	+	.	ID=Os11t0266500-02;Name=Os11t0266500-02;Locus_id=Os11g0266500;Note=Conserved hypothetical protein.;Transcript_evidence=AK103229 (DDBJ%2C Best hit);ORF_evidence=Q6H4Y6 (UniProt);NIAS_FLcDNA=J033123D06;TENOR=Os11t0266500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	9144225	9145533	.	+	.	Parent=Os11t0266500-02
Chr11	irgsp1_rep	CDS	9145534	9145659	.	+	0	Parent=Os11t0266500-02
Chr11	irgsp1_rep	three_prime_UTR	9145660	9146048	.	+	.	Parent=Os11t0266500-02
Chr11	irgsp1_rep	mRNA	9156607	9173269	.	-	.	ID=Os11t0266800-01;Name=Os11t0266800-01;Locus_id=Os11g0266800;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK121586 (DDBJ%2C Best hit);ORF_evidence=B9GA92 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J033037J24;Expression=AK121586;TENOR=Os11t0266800-01;KEGG=Os11t0266800-01
Chr11	irgsp1_rep	five_prime_UTR	9173064	9173269	.	-	.	Parent=Os11t0266800-01
Chr11	irgsp1_rep	CDS	9172807	9173063	.	-	0	Parent=Os11t0266800-01
Chr11	irgsp1_rep	CDS	9172306	9172420	.	-	1	Parent=Os11t0266800-01
Chr11	irgsp1_rep	CDS	9171929	9172036	.	-	0	Parent=Os11t0266800-01
Chr11	irgsp1_rep	CDS	9169939	9170120	.	-	0	Parent=Os11t0266800-01
Chr11	irgsp1_rep	CDS	9169417	9169612	.	-	1	Parent=Os11t0266800-01
Chr11	irgsp1_rep	CDS	9168664	9168921	.	-	0	Parent=Os11t0266800-01
Chr11	irgsp1_rep	CDS	9168273	9168419	.	-	0	Parent=Os11t0266800-01
Chr11	irgsp1_rep	CDS	9166935	9167013	.	-	0	Parent=Os11t0266800-01
Chr11	irgsp1_rep	CDS	9164426	9164539	.	-	2	Parent=Os11t0266800-01
Chr11	irgsp1_rep	CDS	9164190	9164353	.	-	2	Parent=Os11t0266800-01
Chr11	irgsp1_rep	CDS	9163007	9163125	.	-	0	Parent=Os11t0266800-01
Chr11	irgsp1_rep	CDS	9161675	9161750	.	-	1	Parent=Os11t0266800-01
Chr11	irgsp1_rep	CDS	9161512	9161583	.	-	0	Parent=Os11t0266800-01
Chr11	irgsp1_rep	CDS	9160541	9160667	.	-	0	Parent=Os11t0266800-01
Chr11	irgsp1_rep	CDS	9159366	9159480	.	-	2	Parent=Os11t0266800-01
Chr11	irgsp1_rep	CDS	9158372	9158562	.	-	1	Parent=Os11t0266800-01
Chr11	irgsp1_rep	CDS	9158170	9158282	.	-	2	Parent=Os11t0266800-01
Chr11	irgsp1_rep	CDS	9156725	9156994	.	-	0	Parent=Os11t0266800-01
Chr11	irgsp1_rep	three_prime_UTR	9156607	9156724	.	-	.	Parent=Os11t0266800-01
Chr11	irgsp1_rep	mRNA	9177329	9178560	.	+	.	ID=Os11t0267000-02;Name=Os11t0267000-02;Locus_id=Os11g0267000;RAP-DB Gene Symbol Synonym(s)=GUN4%2C OsGUN4;RAP-DB Gene Name Synonym(s)=Genome uncoupled 4%2C magnesium chelatase (Mg-chelatase) activating factor%2C magnesium chelatase accessory protein GUN4%2C magnesium-chelatase accessory protein GUN4;CGSNL Gene Symbol=GUN4;CGSNL Gene Name=GENOME UNCOUPLED 4;Oryzabase Gene Symbol Synonym(s)=OsGUN4;Oryzabase Gene Name Synonym(s)=Genome uncoupled 4%2C magnesium chelatase (Mg-chelatase) activating factor%2C magnesium chelatase accessory protein GUN4%2C magnesium-chelatase accessory protein GUN4;Note=Regulator of the Magnesium-chelatase subunit ChlH activity%2C Activation of the ChlH subunit of magnesium chelatase%2C Chlorophyll synthesis;Transcript_evidence=AK061014,AK104559;ORF_evidence=Q53M04;InterPro=GUN4-like (IPR008629);NIAS_FLcDNA=006-204-B07, 006-306-B02;Manual Curation=October 13%2C 2015;Literature_PMID=22226678;Oryzabase=19856;Expression=AK061014;TENOR=Os11t0267000-02;KEGG=Os11t0267000-02
Chr11	irgsp1_rep	five_prime_UTR	9177329	9177551	.	+	.	Parent=Os11t0267000-02
Chr11	irgsp1_rep	CDS	9177552	9178373	.	+	0	Parent=Os11t0267000-02
Chr11	irgsp1_rep	three_prime_UTR	9178374	9178560	.	+	.	Parent=Os11t0267000-02
Chr11	irgsp1_rep	mRNA	9177495	9178565	.	+	.	ID=Os11t0267000-03;Name=Os11t0267000-03;Locus_id=Os11g0267000;CGSNL Gene Symbol=GUN4;CGSNL Gene Name=GENOME UNCOUPLED 4;Oryzabase Gene Symbol Synonym(s)=OsGUN4;Oryzabase Gene Name Synonym(s)=Genome uncoupled 4%2C magnesium chelatase (Mg-chelatase) activating factor%2C magnesium chelatase accessory protein GUN4%2C magnesium-chelatase accessory protein GUN4;Note=GUN4-like domain containing protein.;Transcript_evidence=AK060022 (DDBJ%2C Best hit),AK100815 (DDBJ%2C Best hit);ORF_evidence=NP_191499.1 (RefSeq);InterPro=GUN4-like (IPR008629);NIAS_FLcDNA=006-302-H05,J023122C05;Oryzabase=19856;Expression=AK060022;TENOR=Os11t0267000-03;KEGG=Os11t0267000-03
Chr11	irgsp1_rep	five_prime_UTR	9177495	9177551	.	+	.	Parent=Os11t0267000-03
Chr11	irgsp1_rep	CDS	9177552	9178373	.	+	0	Parent=Os11t0267000-03
Chr11	irgsp1_rep	three_prime_UTR	9178374	9178565	.	+	.	Parent=Os11t0267000-03
Chr11	irgsp1_rep	mRNA	9178505	9184295	.	-	.	ID=Os11t0267100-01;Name=Os11t0267100-01;Locus_id=Os11g0267100;Note=Uncharacterised protein family UPF0454 domain containing protein.;Transcript_evidence=AK109670 (DDBJ%2C Best hit);ORF_evidence=B9GA93 (UniProt);InterPro=Uncharacterised protein family UPF0454 (IPR019352);NIAS_FLcDNA=002-145-B01;TENOR=Os11t0267100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	9184224	9184295	.	-	.	Parent=Os11t0267100-01
Chr11	irgsp1_rep	CDS	9184129	9184223	.	-	0	Parent=Os11t0267100-01
Chr11	irgsp1_rep	CDS	9183214	9183290	.	-	1	Parent=Os11t0267100-01
Chr11	irgsp1_rep	CDS	9183034	9183113	.	-	2	Parent=Os11t0267100-01
Chr11	irgsp1_rep	three_prime_UTR	9182867	9183033	.	-	.	Parent=Os11t0267100-01
Chr11	irgsp1_rep	three_prime_UTR	9182736	9182787	.	-	.	Parent=Os11t0267100-01
Chr11	irgsp1_rep	three_prime_UTR	9182295	9182658	.	-	.	Parent=Os11t0267100-01
Chr11	irgsp1_rep	three_prime_UTR	9181036	9181093	.	-	.	Parent=Os11t0267100-01
Chr11	irgsp1_rep	three_prime_UTR	9180859	9180945	.	-	.	Parent=Os11t0267100-01
Chr11	irgsp1_rep	three_prime_UTR	9179461	9179554	.	-	.	Parent=Os11t0267100-01
Chr11	irgsp1_rep	three_prime_UTR	9178995	9179124	.	-	.	Parent=Os11t0267100-01
Chr11	irgsp1_rep	three_prime_UTR	9178505	9178892	.	-	.	Parent=Os11t0267100-01
Chr11	irgsp1_rep	mRNA	9187679	9192837	.	+	.	ID=Os11t0267300-01;Name=Os11t0267300-01;Locus_id=Os11g0267300;Note=Similar to Endonuclease III homologue.;Transcript_evidence=AK100529 (DDBJ%2C Best hit);ORF_evidence=Q53LY1 (UniProt);NIAS_FLcDNA=J023101G11;TENOR=Os11t0267300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	9187679	9187846	.	+	.	Parent=Os11t0267300-01
Chr11	irgsp1_rep	CDS	9187847	9187967	.	+	0	Parent=Os11t0267300-01
Chr11	irgsp1_rep	CDS	9189166	9189293	.	+	2	Parent=Os11t0267300-01
Chr11	irgsp1_rep	CDS	9189657	9189714	.	+	0	Parent=Os11t0267300-01
Chr11	irgsp1_rep	CDS	9189815	9189876	.	+	2	Parent=Os11t0267300-01
Chr11	irgsp1_rep	three_prime_UTR	9189877	9190556	.	+	.	Parent=Os11t0267300-01
Chr11	irgsp1_rep	three_prime_UTR	9190947	9191923	.	+	.	Parent=Os11t0267300-01
Chr11	irgsp1_rep	three_prime_UTR	9192002	9192106	.	+	.	Parent=Os11t0267300-01
Chr11	irgsp1_rep	three_prime_UTR	9192210	9192293	.	+	.	Parent=Os11t0267300-01
Chr11	irgsp1_rep	three_prime_UTR	9192459	9192837	.	+	.	Parent=Os11t0267300-01
Chr11	irgsp1_rep	mRNA	9193137	9198640	.	-	.	ID=Os11t0267400-01;Name=Os11t0267400-01;Locus_id=Os11g0267400;CGSNL Gene Symbol=CLPC3;CGSNL Gene Name=CLASS I CLP ATPASE C3;Oryzabase Gene Symbol Synonym(s)=ClpC3%2C OsCLPC3;Oryzabase Gene Name Synonym(s)=class I Clp ATPase C3;Note=Similar to ClpC.;Transcript_evidence=AK100126 (DDBJ%2C Best hit),AK069552 (DDBJ%2C Best hit);ORF_evidence=NP_568746.1 (RefSeq);GO=Biological Process: nucleotide-excision repair (GO:0006289),Biological Process: protein metabolic process (GO:0019538),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: DNA binding (GO:0003677),Molecular Function: nuclease activity (GO:0004518),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=Chaperonin ClpA/B (IPR001270),UvrB/UvrC protein (IPR001943),ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),Clp%2C N-terminal (IPR004176),ATPase%2C AAA-2 (IPR013093),Chaperonin ClpA/B%2C conserved site (IPR018368),Clp ATPase%2C C-terminal (IPR019489),Double Clp-N motif (IPR023150);NIAS_FLcDNA=J023008I20,J023023N03;Oryzabase=8948;Expression=AK100126;TENOR=Os11t0267400-01;KEGG=Os11t0267400-01
Chr11	irgsp1_rep	five_prime_UTR	9198523	9198640	.	-	.	Parent=Os11t0267400-01
Chr11	irgsp1_rep	five_prime_UTR	9198404	9198443	.	-	.	Parent=Os11t0267400-01
Chr11	irgsp1_rep	CDS	9197818	9198403	.	-	0	Parent=Os11t0267400-01
Chr11	irgsp1_rep	CDS	9197140	9197252	.	-	2	Parent=Os11t0267400-01
Chr11	irgsp1_rep	CDS	9196924	9197055	.	-	0	Parent=Os11t0267400-01
Chr11	irgsp1_rep	CDS	9196623	9196808	.	-	0	Parent=Os11t0267400-01
Chr11	irgsp1_rep	CDS	9196043	9196258	.	-	0	Parent=Os11t0267400-01
Chr11	irgsp1_rep	CDS	9195519	9195736	.	-	0	Parent=Os11t0267400-01
Chr11	irgsp1_rep	CDS	9194901	9194976	.	-	1	Parent=Os11t0267400-01
Chr11	irgsp1_rep	CDS	9194705	9194794	.	-	0	Parent=Os11t0267400-01
Chr11	irgsp1_rep	CDS	9193403	9194584	.	-	0	Parent=Os11t0267400-01
Chr11	irgsp1_rep	three_prime_UTR	9193137	9193402	.	-	.	Parent=Os11t0267400-01
Chr11	irgsp1_rep	mRNA	9244401	9248300	.	-	.	ID=Os11t0268300-00;Name=Os11t0268300-00;Locus_id=Os11g0268300;Note=Similar to transferase family protein.;Transcript_evidence=BT040862 (DDBJ);ORF_evidence=Q53N25 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os11t0268300-00;KEGG=Os11t0268300-00
Chr11	irgsp1_rep	CDS	9247863	9248300	.	-	0	Parent=Os11t0268300-00
Chr11	irgsp1_rep	CDS	9244401	9245339	.	-	0	Parent=Os11t0268300-00
Chr11	irgsp1_rep	mRNA	9296778	9297962	.	-	.	ID=Os11t0269000-00;Name=Os11t0269000-00;Locus_id=Os11g0269000;CGSNL Gene Symbol=CLPC4;CGSNL Gene Name=CLASS I CLP ATPASE C4;Oryzabase Gene Symbol Synonym(s)=ClpC4;Oryzabase Gene Name Synonym(s)=class I Clp ATPase C4;Note=Similar to ATP-dependent clp protease.;Transcript_evidence=AM086427 (DDBJ);ORF_evidence=E5GBL8 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=Chaperonin ClpA/B (IPR001270),ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-2 (IPR013093),Clp ATPase%2C C-terminal (IPR019489);Oryzabase=8949;TENOR=Os11t0269000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	9296778	9297962	.	-	0	Parent=Os11t0269000-00
Chr11	irgsp1_rep	mRNA	9306923	9307333	.	-	.	ID=Os11t0269100-00;Name=Os11t0269100-00;Locus_id=Os11g0269100;Note=Similar to 50S ribosomal protein L16%2C chloroplastic.;Transcript_evidence=A1E9M8 (UniProt);ORF_evidence=A1E9M8 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735),Molecular Function: rRNA binding (GO:0019843);InterPro=Ribosomal protein L16 (IPR000114),Ribosomal protein L10e/L16 (IPR016180),Ribosomal protein L16%2C conserved site (IPR020798);TENOR=Os11t0269100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	9306923	9307333	.	-	0	Parent=Os11t0269100-00
Chr11	irgsp1_rep	mRNA	9351850	9352275	.	+	.	ID=Os11t0269233-01;Name=Os11t0269233-01;Locus_id=Os11g0269233;Note=Non-protein coding transcript.;Transcript_evidence=AK241986 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J075098K04;TENOR=Os11t0269233-01
Chr11	irgsp1_rep	exon	9351850	9352275	.	+	.	Parent=Os11t0269233-01
Chr11	irgsp1_rep	mRNA	9378931	9379012	.	+	.	ID=Os11t0269433-00;Name=Os11t0269433-00;Locus_id=Os11g0269433;Note=Non-protein coding transcript.;Transcript_evidence=BT019210 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0269433-00
Chr11	irgsp1_rep	exon	9378931	9379012	.	+	.	Parent=Os11t0269433-00
Chr11	irgsp1_rep	mRNA	9383040	9383627	.	+	.	ID=Os11t0269500-00;Name=Os11t0269500-00;Locus_id=Os11g0269500;Note=Similar to HAT family dimerisation domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q53M48 (UniProt);TENOR=Os11t0269500-00;KEGG=Os11t0269500-00
Chr11	irgsp1_rep	CDS	9383040	9383627	.	+	0	Parent=Os11t0269500-00
Chr11	irgsp1_rep	mRNA	9389546	9393369	.	+	.	ID=Os11t0269700-01;Name=Os11t0269700-01;Locus_id=Os11g0269700;Note=Hypothetical protein.;Transcript_evidence=AK071998 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013092L06;Expression=AK071998;TENOR=Os11t0269700-01;KEGG=Os11t0269700-01
Chr11	irgsp1_rep	five_prime_UTR	9389546	9389827	.	+	.	Parent=Os11t0269700-01
Chr11	irgsp1_rep	five_prime_UTR	9390062	9391879	.	+	.	Parent=Os11t0269700-01
Chr11	irgsp1_rep	CDS	9391880	9392389	.	+	0	Parent=Os11t0269700-01
Chr11	irgsp1_rep	three_prime_UTR	9392390	9393369	.	+	.	Parent=Os11t0269700-01
Chr11	irgsp1_rep	mRNA	9407238	9409922	.	-	.	ID=Os11t0269900-01;Name=Os11t0269900-01;Locus_id=Os11g0269900;Note=Hypothetical conserved gene.;Transcript_evidence=AK243529 (DDBJ%2C Best hit);ORF_evidence=Q53N19 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Crotonase%2C core (IPR001753);NIAS_FLcDNA=J100076G10;TENOR=Os11t0269900-01;KEGG=Os11t0269900-01
Chr11	irgsp1_rep	five_prime_UTR	9409895	9409922	.	-	.	Parent=Os11t0269900-01
Chr11	irgsp1_rep	CDS	9409176	9409894	.	-	0	Parent=Os11t0269900-01
Chr11	irgsp1_rep	CDS	9408520	9408582	.	-	1	Parent=Os11t0269900-01
Chr11	irgsp1_rep	CDS	9407500	9407527	.	-	1	Parent=Os11t0269900-01
Chr11	irgsp1_rep	three_prime_UTR	9407238	9407499	.	-	.	Parent=Os11t0269900-01
Chr11	irgsp1_rep	mRNA	9410401	9411512	.	-	.	ID=Os11t0270000-01;Name=Os11t0270000-01;Locus_id=Os11g0270000;Note=Crotonase%2C core domain containing protein.;Transcript_evidence=AK243222 (DDBJ%2C Best hit);ORF_evidence=NP_001176476.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Crotonase%2C core (IPR001753);NIAS_FLcDNA=J100043N02;TENOR=Os11t0270000-01;KEGG=Os11t0270000-01
Chr11	irgsp1_rep	five_prime_UTR	9411428	9411512	.	-	.	Parent=Os11t0270000-01
Chr11	irgsp1_rep	CDS	9410675	9411427	.	-	0	Parent=Os11t0270000-01
Chr11	irgsp1_rep	three_prime_UTR	9410401	9410674	.	-	.	Parent=Os11t0270000-01
Chr11	irgsp1_rep	mRNA	9417345	9418117	.	-	.	ID=Os11t0270201-00;Name=Os11t0270201-00;Locus_id=Os11g0270201;Note=Conserved hypothetical protein.;Transcript_evidence=FP095600 (DDBJ);ORF_evidence=B9GA98 (UniProt);TENOR=Os11t0270201-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	9417389	9418117	.	-	0	Parent=Os11t0270201-00
Chr11	irgsp1_rep	three_prime_UTR	9417345	9417388	.	-	.	Parent=Os11t0270201-00
Chr11	irgsp1_rep	mRNA	9423621	9432504	.	+	.	ID=Os11t0270500-01;Name=Os11t0270500-01;Locus_id=Os11g0270500;Note=NB-ARC domain containing protein.;Transcript_evidence=AK110480 (DDBJ%2C Best hit);ORF_evidence=Q53N63 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=002-167-A04;Expression=AK110480;TENOR=Os11t0270500-01;KEGG=Os11t0270500-01
Chr11	irgsp1_rep	five_prime_UTR	9423621	9423702	.	+	.	Parent=Os11t0270500-01
Chr11	irgsp1_rep	CDS	9423703	9423954	.	+	0	Parent=Os11t0270500-01
Chr11	irgsp1_rep	CDS	9429725	9429936	.	+	0	Parent=Os11t0270500-01
Chr11	irgsp1_rep	CDS	9430260	9432396	.	+	1	Parent=Os11t0270500-01
Chr11	irgsp1_rep	three_prime_UTR	9432397	9432504	.	+	.	Parent=Os11t0270500-01
Chr11	irgsp1_rep	mRNA	9429458	9433453	.	-	.	ID=Os11t0270700-01;Name=Os11t0270700-01;Locus_id=Os11g0270700;Note=Hypothetical protein.;Transcript_evidence=AK072193 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013152D17;Expression=AK072193;TENOR=Os11t0270700-01;KEGG=Os11t0270700-01
Chr11	irgsp1_rep	five_prime_UTR	9433334	9433453	.	-	.	Parent=Os11t0270700-01
Chr11	irgsp1_rep	five_prime_UTR	9430773	9433164	.	-	.	Parent=Os11t0270700-01
Chr11	irgsp1_rep	CDS	9430535	9430772	.	-	0	Parent=Os11t0270700-01
Chr11	irgsp1_rep	CDS	9430249	9430409	.	-	2	Parent=Os11t0270700-01
Chr11	irgsp1_rep	three_prime_UTR	9430223	9430248	.	-	.	Parent=Os11t0270700-01
Chr11	irgsp1_rep	three_prime_UTR	9429897	9429987	.	-	.	Parent=Os11t0270700-01
Chr11	irgsp1_rep	three_prime_UTR	9429458	9429800	.	-	.	Parent=Os11t0270700-01
Chr11	irgsp1_rep	mRNA	9438148	9440422	.	+	.	ID=Os11t0270760-00;Name=Os11t0270760-00;Locus_id=Os11g0270760;Note=Conserved hypothetical protein.;Transcript_evidence=FP094881 (DDBJ);ORF_evidence=Q53N69 (UniProt);TENOR=Os11t0270760-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	9438148	9438543	.	+	0	Parent=Os11t0270760-00
Chr11	irgsp1_rep	three_prime_UTR	9438544	9438658	.	+	.	Parent=Os11t0270760-00
Chr11	irgsp1_rep	three_prime_UTR	9440162	9440422	.	+	.	Parent=Os11t0270760-00
Chr11	irgsp1_rep	mRNA	9465497	9466447	.	-	.	ID=Os11t0271000-01;Name=Os11t0271000-01;Locus_id=Os11g0271000;Note=Hypothetical protein.;Transcript_evidence=AK110686 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-169-H10;TENOR=Os11t0271000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	9466447	9466447	.	-	.	Parent=Os11t0271000-01
Chr11	irgsp1_rep	CDS	9466030	9466446	.	-	0	Parent=Os11t0271000-01
Chr11	irgsp1_rep	three_prime_UTR	9465497	9466029	.	-	.	Parent=Os11t0271000-01
Chr11	irgsp1_rep	mRNA	9463861	9466395	.	-	.	ID=Os11t0271000-02;Name=Os11t0271000-02;Locus_id=Os11g0271000;Note=Conserved hypothetical protein.;Transcript_evidence=AK107436 (DDBJ%2C Best hit);ORF_evidence=Q53N73 (UniProt);NIAS_FLcDNA=002-128-A12;Expression=AK107436;TENOR=Os11t0271000-02;KEGG=Os11t0271000-02
Chr11	irgsp1_rep	five_prime_UTR	9465662	9466395	.	-	.	Parent=Os11t0271000-02
Chr11	irgsp1_rep	five_prime_UTR	9465114	9465163	.	-	.	Parent=Os11t0271000-02
Chr11	irgsp1_rep	five_prime_UTR	9464497	9464671	.	-	.	Parent=Os11t0271000-02
Chr11	irgsp1_rep	CDS	9464437	9464496	.	-	0	Parent=Os11t0271000-02
Chr11	irgsp1_rep	CDS	9463955	9464098	.	-	0	Parent=Os11t0271000-02
Chr11	irgsp1_rep	three_prime_UTR	9463861	9463954	.	-	.	Parent=Os11t0271000-02
Chr11	irgsp1_rep	mRNA	9471589	9479354	.	+	.	ID=Os11t0271100-01;Name=Os11t0271100-01;Locus_id=Os11g0271100;RAP-DB Gene Symbol Synonym(s)=OsMPK15;RAP-DB Gene Name Synonym(s)=Mitogen-activated protein kinase 15;Oryzabase Gene Symbol Synonym(s)=OsMPK16%2C MPK16%2C OsMPK15%2C MPK15;Oryzabase Gene Name Synonym(s)=MAP kinase 16;Note=Mitogen-activated protein kinase%2C Negative regulation of defense response to the M. oryzae and Xoo pathogens;Transcript_evidence=AK068981;ORF_evidence=Q53N72;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: MAP kinase activity (GO:0004707),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),Protein kinase domain (IPR000719),Protein kinase%2C ATP binding site (IPR017441),Mitogen-activated protein (MAP) kinase%2C conserved site (IPR003527);NIAS_FLcDNA=J023003L10;Manual Curation=July 17%2C 2019;Literature_PMID=31293603;Oryzabase=10678;Expression=AK068981;TENOR=Os11t0271100-01;KEGG=Os11t0271100-01
Chr11	irgsp1_rep	five_prime_UTR	9471589	9471646	.	+	.	Parent=Os11t0271100-01
Chr11	irgsp1_rep	five_prime_UTR	9472358	9472369	.	+	.	Parent=Os11t0271100-01
Chr11	irgsp1_rep	CDS	9472370	9472766	.	+	0	Parent=Os11t0271100-01
Chr11	irgsp1_rep	CDS	9474666	9474793	.	+	2	Parent=Os11t0271100-01
Chr11	irgsp1_rep	CDS	9474869	9474928	.	+	0	Parent=Os11t0271100-01
Chr11	irgsp1_rep	CDS	9476196	9476345	.	+	0	Parent=Os11t0271100-01
Chr11	irgsp1_rep	CDS	9476429	9476584	.	+	0	Parent=Os11t0271100-01
Chr11	irgsp1_rep	CDS	9476667	9476878	.	+	0	Parent=Os11t0271100-01
Chr11	irgsp1_rep	CDS	9477334	9477435	.	+	1	Parent=Os11t0271100-01
Chr11	irgsp1_rep	CDS	9477547	9477686	.	+	1	Parent=Os11t0271100-01
Chr11	irgsp1_rep	CDS	9478543	9478694	.	+	2	Parent=Os11t0271100-01
Chr11	irgsp1_rep	three_prime_UTR	9478695	9479354	.	+	.	Parent=Os11t0271100-01
Chr11	irgsp1_rep	mRNA	9472371	9476891	.	-	.	ID=Os11t0271675-00;Name=Os11t0271675-00;Locus_id=Os11g0271675;Note=Hypothetical protein.;Transcript_evidence=tplb0059e09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0271675-00
Chr11	irgsp1_rep	five_prime_UTR	9476657	9476891	.	-	.	Parent=Os11t0271675-00
Chr11	irgsp1_rep	five_prime_UTR	9476426	9476576	.	-	.	Parent=Os11t0271675-00
Chr11	irgsp1_rep	five_prime_UTR	9476234	9476340	.	-	.	Parent=Os11t0271675-00
Chr11	irgsp1_rep	CDS	9476146	9476233	.	-	0	Parent=Os11t0271675-00
Chr11	irgsp1_rep	CDS	9474680	9474801	.	-	2	Parent=Os11t0271675-00
Chr11	irgsp1_rep	CDS	9472565	9472780	.	-	0	Parent=Os11t0271675-00
Chr11	irgsp1_rep	three_prime_UTR	9472371	9472564	.	-	.	Parent=Os11t0271675-00
Chr11	irgsp1_rep	mRNA	9593588	9593953	.	-	.	ID=Os11t0272300-00;Name=Os11t0272300-00;Locus_id=Os11g0272300;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q53MJ8 (UniProt);TENOR=Os11t0272300-00;KEGG=Os11t0272300-00
Chr11	irgsp1_rep	CDS	9593588	9593953	.	-	0	Parent=Os11t0272300-00
Chr11	irgsp1_rep	mRNA	9614438	9614499	.	-	.	ID=Os11t0272550-00;Name=Os11t0272550-00;Locus_id=Os11g0272550;Note=Non-protein coding transcript.;Transcript_evidence=EU941912 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0272550-00
Chr11	irgsp1_rep	exon	9614438	9614499	.	-	.	Parent=Os11t0272550-00
Chr11	irgsp1_rep	mRNA	9618293	9619121	.	+	.	ID=Os11t0272675-00;Name=Os11t0272675-00;Locus_id=Os11g0272675;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);InterPro=Ribonuclease H1%2C N-terminal (IPR011320);TENOR=Os11t0272675-00
Chr11	irgsp1_rep	five_prime_UTR	9618293	9618296	.	+	.	Parent=Os11t0272675-00
Chr11	irgsp1_rep	CDS	9618297	9619121	.	+	0	Parent=Os11t0272675-00
Chr11	irgsp1_rep	mRNA	9633317	9633699	.	+	.	ID=Os11t0272800-01;Name=Os11t0272800-01;Locus_id=Os11g0272800;Note=Similar to Ulp1 protease family%2C C-terminal catalytic domain containing protein%2C expressed.;Transcript_evidence=AK105058 (DDBJ%2C Best hit);ORF_evidence=Q53MK8 (UniProt);NIAS_FLcDNA=001-043-E10;Expression=AK105058;TENOR=Os11t0272800-01;KEGG=Os11t0272800-01
Chr11	irgsp1_rep	CDS	9633317	9633388	.	+	0	Parent=Os11t0272800-01
Chr11	irgsp1_rep	three_prime_UTR	9633389	9633699	.	+	.	Parent=Os11t0272800-01
Chr11	irgsp1_rep	mRNA	9634897	9639465	.	-	.	ID=Os11t0272900-01;Name=Os11t0272900-01;Locus_id=Os11g0272900;Note=Conserved hypothetical protein.;Transcript_evidence=AK068971 (DDBJ%2C Best hit);ORF_evidence=Q53MK6 (UniProt);NIAS_FLcDNA=J023001N11;TENOR=Os11t0272900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	9639464	9639465	.	-	.	Parent=Os11t0272900-01
Chr11	irgsp1_rep	CDS	9639090	9639463	.	-	0	Parent=Os11t0272900-01
Chr11	irgsp1_rep	CDS	9638279	9638528	.	-	1	Parent=Os11t0272900-01
Chr11	irgsp1_rep	CDS	9637957	9638172	.	-	0	Parent=Os11t0272900-01
Chr11	irgsp1_rep	three_prime_UTR	9637676	9637956	.	-	.	Parent=Os11t0272900-01
Chr11	irgsp1_rep	three_prime_UTR	9636931	9637312	.	-	.	Parent=Os11t0272900-01
Chr11	irgsp1_rep	three_prime_UTR	9636347	9636810	.	-	.	Parent=Os11t0272900-01
Chr11	irgsp1_rep	three_prime_UTR	9635710	9635974	.	-	.	Parent=Os11t0272900-01
Chr11	irgsp1_rep	three_prime_UTR	9635208	9635472	.	-	.	Parent=Os11t0272900-01
Chr11	irgsp1_rep	three_prime_UTR	9634897	9634919	.	-	.	Parent=Os11t0272900-01
Chr11	irgsp1_rep	mRNA	9688431	9692332	.	-	.	ID=Os11t0274100-00;Name=Os11t0274100-00;Locus_id=Os11g0274100;CGSNL Gene Symbol=RLCK321;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 321;Oryzabase Gene Symbol Synonym(s)=OsRLCK321;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 321;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=tplb0006m05 (Wheat FLcDNA);ORF_evidence=Q2R1E4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: structural molecule activity (GO:0005198),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Major sperm protein (IPR000535),Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),PapD-like (IPR008962),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18992;TENOR=Os11t0274100-00
Chr11	irgsp1_rep	CDS	9692065	9692332	.	-	0	Parent=Os11t0274100-00
Chr11	irgsp1_rep	CDS	9691743	9691974	.	-	2	Parent=Os11t0274100-00
Chr11	irgsp1_rep	CDS	9691217	9691370	.	-	1	Parent=Os11t0274100-00
Chr11	irgsp1_rep	CDS	9690875	9691096	.	-	0	Parent=Os11t0274100-00
Chr11	irgsp1_rep	CDS	9688431	9688841	.	-	0	Parent=Os11t0274100-00
Chr11	irgsp1_rep	mRNA	9688443	9697030	.	+	.	ID=Os11t0274166-00;Name=Os11t0274166-00;Locus_id=Os11g0274166;Note=Hypothetical protein.;Transcript_evidence=tplb0060i13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0274166-00
Chr11	irgsp1_rep	five_prime_UTR	9688443	9688862	.	+	.	Parent=Os11t0274166-00
Chr11	irgsp1_rep	five_prime_UTR	9690887	9691078	.	+	.	Parent=Os11t0274166-00
Chr11	irgsp1_rep	five_prime_UTR	9691197	9691391	.	+	.	Parent=Os11t0274166-00
Chr11	irgsp1_rep	five_prime_UTR	9691759	9691992	.	+	.	Parent=Os11t0274166-00
Chr11	irgsp1_rep	five_prime_UTR	9692084	9692212	.	+	.	Parent=Os11t0274166-00
Chr11	irgsp1_rep	CDS	9692213	9692313	.	+	0	Parent=Os11t0274166-00
Chr11	irgsp1_rep	CDS	9696908	9697030	.	+	1	Parent=Os11t0274166-00
Chr11	irgsp1_rep	mRNA	9724410	9728188	.	-	.	ID=Os11t0274700-01;Name=Os11t0274700-01;Locus_id=Os11g0274700;CGSNL Gene Symbol=RLCK322;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 322;Oryzabase Gene Symbol Synonym(s)=OsRLCK322;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 322;Note=Hypothetical conserved gene.;Transcript_evidence=AK243142 (DDBJ%2C Best hit);ORF_evidence=Q53Q96 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Crotonase%2C core (IPR001753),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J100031J10;Oryzabase=18993;TENOR=Os11t0274700-01;KEGG=Os11t0274700-01
Chr11	irgsp1_rep	five_prime_UTR	9728088	9728188	.	-	.	Parent=Os11t0274700-01
Chr11	irgsp1_rep	CDS	9727354	9728087	.	-	0	Parent=Os11t0274700-01
Chr11	irgsp1_rep	CDS	9727150	9727212	.	-	1	Parent=Os11t0274700-01
Chr11	irgsp1_rep	CDS	9725824	9725938	.	-	1	Parent=Os11t0274700-01
Chr11	irgsp1_rep	CDS	9725456	9725711	.	-	0	Parent=Os11t0274700-01
Chr11	irgsp1_rep	CDS	9725134	9725368	.	-	2	Parent=Os11t0274700-01
Chr11	irgsp1_rep	CDS	9724865	9725024	.	-	1	Parent=Os11t0274700-01
Chr11	irgsp1_rep	CDS	9724594	9724752	.	-	0	Parent=Os11t0274700-01
Chr11	irgsp1_rep	three_prime_UTR	9724410	9724593	.	-	.	Parent=Os11t0274700-01
Chr11	irgsp1_rep	mRNA	9748379	9751957	.	+	.	ID=Os11t0275000-00;Name=Os11t0275000-00;Locus_id=Os11g0275000;Note=Similar to Dienelactone hydrolase family.;Transcript_evidence=CT837795 (DDBJ%2C Best hit);ORF_evidence=Q53Q95 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Dienelactone hydrolase (IPR002925);TENOR=Os11t0275000-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	9748379	9748539	.	+	.	Parent=Os11t0275000-00
Chr11	irgsp1_rep	CDS	9748540	9748596	.	+	0	Parent=Os11t0275000-00
Chr11	irgsp1_rep	CDS	9750589	9750679	.	+	0	Parent=Os11t0275000-00
Chr11	irgsp1_rep	CDS	9750833	9750922	.	+	2	Parent=Os11t0275000-00
Chr11	irgsp1_rep	CDS	9751050	9751150	.	+	2	Parent=Os11t0275000-00
Chr11	irgsp1_rep	CDS	9751619	9751759	.	+	0	Parent=Os11t0275000-00
Chr11	irgsp1_rep	three_prime_UTR	9751760	9751957	.	+	.	Parent=Os11t0275000-00
Chr11	irgsp1_rep	mRNA	9754959	9759732	.	+	.	ID=Os11t0275200-01;Name=Os11t0275200-01;Locus_id=Os11g0275200;Note=Similar to Endo-1%2C3%3B1%2C4-beta-D-glucanase precursor (EC 3.2.1.-).;Transcript_evidence=AK067288 (DDBJ%2C Best hit),AK066677 (DDBJ%2C Best hit),AK104507 (DDBJ%2C Best hit);ORF_evidence=Q53Q95 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Dienelactone hydrolase (IPR002925);NIAS_FLcDNA=J013100O03,J013071C10,006-302-G07;Expression=AK067288;TENOR=Os11t0275200-01;KEGG=Os11t0275200-01
Chr11	irgsp1_rep	five_prime_UTR	9754959	9754973	.	+	.	Parent=Os11t0275200-01
Chr11	irgsp1_rep	CDS	9754974	9755211	.	+	0	Parent=Os11t0275200-01
Chr11	irgsp1_rep	CDS	9755368	9755389	.	+	2	Parent=Os11t0275200-01
Chr11	irgsp1_rep	CDS	9757464	9757581	.	+	1	Parent=Os11t0275200-01
Chr11	irgsp1_rep	CDS	9758586	9758676	.	+	0	Parent=Os11t0275200-01
Chr11	irgsp1_rep	CDS	9758817	9758906	.	+	2	Parent=Os11t0275200-01
Chr11	irgsp1_rep	CDS	9758998	9759098	.	+	2	Parent=Os11t0275200-01
Chr11	irgsp1_rep	CDS	9759514	9759654	.	+	0	Parent=Os11t0275200-01
Chr11	irgsp1_rep	three_prime_UTR	9759655	9759732	.	+	.	Parent=Os11t0275200-01
Chr11	irgsp1_rep	mRNA	9768071	9771637	.	+	.	ID=Os11t0275400-01;Name=Os11t0275400-01;Locus_id=Os11g0275400;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK068323 (DDBJ%2C Best hit);ORF_evidence=B6SXP2 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J013149H17;Expression=AK068323;TENOR=Os11t0275400-01;KEGG=Os11t0275400-01
Chr11	irgsp1_rep	five_prime_UTR	9768071	9768427	.	+	.	Parent=Os11t0275400-01
Chr11	irgsp1_rep	CDS	9768428	9768490	.	+	0	Parent=Os11t0275400-01
Chr11	irgsp1_rep	CDS	9769541	9771307	.	+	0	Parent=Os11t0275400-01
Chr11	irgsp1_rep	three_prime_UTR	9771308	9771637	.	+	.	Parent=Os11t0275400-01
Chr11	irgsp1_rep	mRNA	9773256	9776906	.	+	.	ID=Os11t0275500-01;Name=Os11t0275500-01;Locus_id=Os11g0275500;Note=Similar to Endo-1%2C3%3B1%2C4-beta-D-glucanase precursor (EC 3.2.1.-).;Transcript_evidence=AK059739 (DDBJ%2C Best hit),AK104657 (DDBJ%2C Best hit);ORF_evidence=B6TMW5 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Dienelactone hydrolase (IPR002925);NIAS_FLcDNA=006-202-F02,006-311-D03;TENOR=Os11t0275500-01
Chr11	irgsp1_rep	CDS	9773256	9773517	.	+	0	Parent=Os11t0275500-01
Chr11	irgsp1_rep	CDS	9773642	9773663	.	+	2	Parent=Os11t0275500-01
Chr11	irgsp1_rep	CDS	9775472	9775595	.	+	1	Parent=Os11t0275500-01
Chr11	irgsp1_rep	CDS	9775686	9775776	.	+	0	Parent=Os11t0275500-01
Chr11	irgsp1_rep	CDS	9775939	9776028	.	+	2	Parent=Os11t0275500-01
Chr11	irgsp1_rep	CDS	9776152	9776252	.	+	2	Parent=Os11t0275500-01
Chr11	irgsp1_rep	CDS	9776553	9776693	.	+	0	Parent=Os11t0275500-01
Chr11	irgsp1_rep	three_prime_UTR	9776694	9776906	.	+	.	Parent=Os11t0275500-01
Chr11	irgsp1_rep	mRNA	9787842	9788720	.	-	.	ID=Os11t0275800-00;Name=Os11t0275800-00;Locus_id=Os11g0275800;Note=Crotonase%2C core domain containing protein.;Transcript_evidence=FP095600 (DDBJ);ORF_evidence=Q53Q84 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Crotonase%2C core (IPR001753);TENOR=Os11t0275800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	9788715	9788720	.	-	.	Parent=Os11t0275800-00
Chr11	irgsp1_rep	CDS	9788007	9788714	.	-	0	Parent=Os11t0275800-00
Chr11	irgsp1_rep	three_prime_UTR	9787842	9788006	.	-	.	Parent=Os11t0275800-00
Chr11	irgsp1_rep	mRNA	9794124	9794527	.	+	.	ID=Os11t0275900-00;Name=Os11t0275900-00;Locus_id=Os11g0275900;Note=Conserved hypothetical protein.;Transcript_evidence=BT063021 (DDBJ);ORF_evidence=XP_002449359.1 (RefSeq);TENOR=Os11t0275900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	9794124	9794414	.	+	0	Parent=Os11t0275900-00
Chr11	irgsp1_rep	three_prime_UTR	9794415	9794527	.	+	.	Parent=Os11t0275900-00
Chr11	irgsp1_rep	mRNA	9794920	9807643	.	+	.	ID=Os11t0276000-01;Name=Os11t0276000-01;Locus_id=Os11g0276000;RAP-DB Gene Symbol Synonym(s)=OsSEC3B;RAP-DB Gene Name Synonym(s)=subunit of the exocyst complex 3B;Oryzabase Gene Symbol Synonym(s)=OsSTA254%2C STA254 OsSEC3B%2C SEC3B;Oryzabase Gene Name Synonym(s)=exocyst subunit Sec3%2C exocyst subunit SEC3B;Note=Subunit of the exocyst complex;Transcript_evidence=AK072319;ORF_evidence=Q53Q77;GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exocyst complex component Sec3%2C PIP2-binding N-terminal domain (IPR028258),Exocyst complex component Sec3%2C C-terminal (IPR019160);NIAS_FLcDNA=J023029D06;Manual Curation=January 16%2C 2018;Literature_PMID=29300985;Oryzabase=19520;Expression=AK072319;TENOR=Os11t0276000-01;KEGG=Os11t0276000-01
Chr11	irgsp1_rep	five_prime_UTR	9794920	9795129	.	+	.	Parent=Os11t0276000-01
Chr11	irgsp1_rep	CDS	9795130	9795316	.	+	0	Parent=Os11t0276000-01
Chr11	irgsp1_rep	CDS	9795410	9795480	.	+	2	Parent=Os11t0276000-01
Chr11	irgsp1_rep	CDS	9795583	9795663	.	+	0	Parent=Os11t0276000-01
Chr11	irgsp1_rep	CDS	9795901	9795968	.	+	0	Parent=Os11t0276000-01
Chr11	irgsp1_rep	CDS	9796097	9796199	.	+	1	Parent=Os11t0276000-01
Chr11	irgsp1_rep	CDS	9799184	9799329	.	+	0	Parent=Os11t0276000-01
Chr11	irgsp1_rep	CDS	9799448	9799565	.	+	1	Parent=Os11t0276000-01
Chr11	irgsp1_rep	CDS	9800455	9800559	.	+	0	Parent=Os11t0276000-01
Chr11	irgsp1_rep	CDS	9801095	9801196	.	+	0	Parent=Os11t0276000-01
Chr11	irgsp1_rep	CDS	9801280	9801417	.	+	0	Parent=Os11t0276000-01
Chr11	irgsp1_rep	CDS	9802237	9802365	.	+	0	Parent=Os11t0276000-01
Chr11	irgsp1_rep	CDS	9802444	9802524	.	+	0	Parent=Os11t0276000-01
Chr11	irgsp1_rep	CDS	9802645	9802719	.	+	0	Parent=Os11t0276000-01
Chr11	irgsp1_rep	CDS	9803623	9803790	.	+	0	Parent=Os11t0276000-01
Chr11	irgsp1_rep	CDS	9803887	9804004	.	+	0	Parent=Os11t0276000-01
Chr11	irgsp1_rep	CDS	9804107	9804171	.	+	2	Parent=Os11t0276000-01
Chr11	irgsp1_rep	CDS	9804309	9804479	.	+	0	Parent=Os11t0276000-01
Chr11	irgsp1_rep	CDS	9804568	9804647	.	+	0	Parent=Os11t0276000-01
Chr11	irgsp1_rep	CDS	9804768	9804846	.	+	1	Parent=Os11t0276000-01
Chr11	irgsp1_rep	CDS	9805079	9805176	.	+	0	Parent=Os11t0276000-01
Chr11	irgsp1_rep	CDS	9805791	9805899	.	+	1	Parent=Os11t0276000-01
Chr11	irgsp1_rep	CDS	9805986	9806054	.	+	0	Parent=Os11t0276000-01
Chr11	irgsp1_rep	CDS	9806532	9806597	.	+	0	Parent=Os11t0276000-01
Chr11	irgsp1_rep	CDS	9806714	9806803	.	+	0	Parent=Os11t0276000-01
Chr11	irgsp1_rep	CDS	9807178	9807288	.	+	0	Parent=Os11t0276000-01
Chr11	irgsp1_rep	three_prime_UTR	9807289	9807643	.	+	.	Parent=Os11t0276000-01
Chr11	irgsp1_rep	mRNA	9798418	9799044	.	+	.	ID=Os11t0276100-01;Name=Os11t0276100-01;Locus_id=Os11g0276100;Note=Conserved hypothetical protein.;Transcript_evidence=AK108684 (DDBJ%2C Best hit);ORF_evidence=NP_001067686.1 (RefSeq);NIAS_FLcDNA=002-149-B11;TENOR=Os11t0276100-01;KEGG=Os11t0276100-01
Chr11	irgsp1_rep	five_prime_UTR	9798418	9798491	.	+	.	Parent=Os11t0276100-01
Chr11	irgsp1_rep	CDS	9798492	9798815	.	+	0	Parent=Os11t0276100-01
Chr11	irgsp1_rep	three_prime_UTR	9798816	9799044	.	+	.	Parent=Os11t0276100-01
Chr11	irgsp1_rep	mRNA	9815907	9820202	.	-	.	ID=Os11t0276300-01;Name=Os11t0276300-01;Locus_id=Os11g0276300;Note=Uncharacterised protein family%2C carbohydrate kinase-related domain containing protein.;Transcript_evidence=AK103343 (DDBJ%2C Best hit);ORF_evidence=NP_568369.1 (RefSeq);InterPro=Uncharacterised domain%2C carbohydrate kinase-related (IPR000631);NIAS_FLcDNA=J033126C17;Expression=AK103343;TENOR=Os11t0276300-01;KEGG=Os11t0276300-01
Chr11	irgsp1_rep	five_prime_UTR	9820176	9820202	.	-	.	Parent=Os11t0276300-01
Chr11	irgsp1_rep	CDS	9819941	9820175	.	-	0	Parent=Os11t0276300-01
Chr11	irgsp1_rep	CDS	9819011	9819087	.	-	2	Parent=Os11t0276300-01
Chr11	irgsp1_rep	CDS	9818830	9818939	.	-	0	Parent=Os11t0276300-01
Chr11	irgsp1_rep	CDS	9818630	9818744	.	-	1	Parent=Os11t0276300-01
Chr11	irgsp1_rep	CDS	9817915	9817977	.	-	0	Parent=Os11t0276300-01
Chr11	irgsp1_rep	CDS	9817666	9817829	.	-	0	Parent=Os11t0276300-01
Chr11	irgsp1_rep	CDS	9817532	9817593	.	-	1	Parent=Os11t0276300-01
Chr11	irgsp1_rep	CDS	9817362	9817428	.	-	2	Parent=Os11t0276300-01
Chr11	irgsp1_rep	CDS	9816447	9816512	.	-	1	Parent=Os11t0276300-01
Chr11	irgsp1_rep	CDS	9816240	9816365	.	-	1	Parent=Os11t0276300-01
Chr11	irgsp1_rep	CDS	9816122	9816152	.	-	1	Parent=Os11t0276300-01
Chr11	irgsp1_rep	three_prime_UTR	9815907	9816121	.	-	.	Parent=Os11t0276300-01
Chr11	irgsp1_rep	mRNA	9896885	9898239	.	-	.	ID=Os11t0278300-00;Name=Os11t0278300-00;Locus_id=Os11g0278300;Note=Hypothetical conserved gene.;Transcript_evidence=AK368401 (DDBJ);ORF_evidence=NP_001067688.2 (RefSeq);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);TENOR=Os11t0278300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	9896893	9898239	.	-	0	Parent=Os11t0278300-00
Chr11	irgsp1_rep	three_prime_UTR	9896885	9896892	.	-	.	Parent=Os11t0278300-00
Chr11	irgsp1_rep	mRNA	9919810	9924870	.	-	.	ID=Os11t0278900-01;Name=Os11t0278900-01;Locus_id=Os11g0278900;Note=Conserved hypothetical protein.;Transcript_evidence=AK241978 (DDBJ%2C Best hit);ORF_evidence=Q6EUE5 (UniProt);NIAS_FLcDNA=J075097A19;TENOR=Os11t0278900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	9922631	9924870	.	-	.	Parent=Os11t0278900-01
Chr11	irgsp1_rep	CDS	9922193	9922630	.	-	0	Parent=Os11t0278900-01
Chr11	irgsp1_rep	three_prime_UTR	9919810	9922192	.	-	.	Parent=Os11t0278900-01
Chr11	irgsp1_rep	mRNA	9957024	9957355	.	+	.	ID=Os11t0279750-00;Name=Os11t0279750-00;Locus_id=Os11g0279750;Note=Similar to Inhibitor I family protein.;Transcript_evidence=EU954691 (DDBJ);ORF_evidence=Q53PR9 (UniProt);GO=Biological Process: response to wounding (GO:0009611),Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Proteinase inhibitor I13%2C potato inhibitor I (IPR000864);TENOR=Os11t0279750-00
Chr11	irgsp1_rep	CDS	9957024	9957227	.	+	0	Parent=Os11t0279750-00
Chr11	irgsp1_rep	three_prime_UTR	9957228	9957355	.	+	.	Parent=Os11t0279750-00
Chr11	irgsp1_rep	mRNA	9961174	9961958	.	+	.	ID=Os11t0280600-01;Name=Os11t0280600-01;Locus_id=Os11g0280600;Note=Hypothetical protein.;Transcript_evidence=AK071642 (DDBJ%2C Best hit),AK073277 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023106C18,J033025E04;Expression=AK071642;TENOR=Os11t0280600-01;KEGG=Os11t0280600-01
Chr11	irgsp1_rep	five_prime_UTR	9961174	9961286	.	+	.	Parent=Os11t0280600-01
Chr11	irgsp1_rep	CDS	9961287	9961724	.	+	0	Parent=Os11t0280600-01
Chr11	irgsp1_rep	three_prime_UTR	9961725	9961958	.	+	.	Parent=Os11t0280600-01
Chr11	irgsp1_rep	mRNA	10068284	10069734	.	+	.	ID=Os11t0282300-01;Name=Os11t0282300-01;Locus_id=Os11g0282300;Note=Protein of unknown function DUF1685 domain containing protein.;Transcript_evidence=AK287710 (DDBJ%2C Best hit);ORF_evidence=NP_001067693.2 (RefSeq);InterPro=Protein of unknown function DUF1685 (IPR012881);NIAS_FLcDNA=J065133C14;TENOR=Os11t0282300-01;KEGG=Os11t0282300-01
Chr11	irgsp1_rep	five_prime_UTR	10068284	10068358	.	+	.	Parent=Os11t0282300-01
Chr11	irgsp1_rep	CDS	10068359	10068977	.	+	0	Parent=Os11t0282300-01
Chr11	irgsp1_rep	CDS	10069188	10069267	.	+	2	Parent=Os11t0282300-01
Chr11	irgsp1_rep	three_prime_UTR	10069268	10069734	.	+	.	Parent=Os11t0282300-01
Chr11	irgsp1_rep	mRNA	10076555	10077237	.	+	.	ID=Os11t0282600-00;Name=Os11t0282600-00;Locus_id=Os11g0282600;Note=Conserved hypothetical protein.;Transcript_evidence=FP095671 (DDBJ);ORF_evidence=Q53NY4 (UniProt);TENOR=Os11t0282600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	10076555	10077010	.	+	0	Parent=Os11t0282600-00
Chr11	irgsp1_rep	three_prime_UTR	10077011	10077237	.	+	.	Parent=Os11t0282600-00
Chr11	irgsp1_rep	mRNA	10081836	10086180	.	-	.	ID=Os11t0282700-01;Name=Os11t0282700-01;Locus_id=Os11g0282700;CGSNL Gene Symbol=MSL38;CGSNL Gene Name=MYB/SANT-LIKE 38;Oryzabase Gene Symbol Synonym(s)=OsMSL38;Oryzabase Gene Name Synonym(s)=Myb/SANT-LIKE 38;Note=Homeodomain-like containing protein.;Transcript_evidence=AK103644 (DDBJ%2C Best hit);ORF_evidence=B9GAB3 (UniProt);NIAS_FLcDNA=J033135A20;Oryzabase=22969;Expression=AK103644;TENOR=Os11t0282700-01;KEGG=Os11t0282700-01
Chr11	irgsp1_rep	five_prime_UTR	10086152	10086180	.	-	.	Parent=Os11t0282700-01
Chr11	irgsp1_rep	CDS	10085865	10086151	.	-	0	Parent=Os11t0282700-01
Chr11	irgsp1_rep	CDS	10085039	10085309	.	-	1	Parent=Os11t0282700-01
Chr11	irgsp1_rep	CDS	10084153	10084947	.	-	0	Parent=Os11t0282700-01
Chr11	irgsp1_rep	CDS	10081873	10082064	.	-	0	Parent=Os11t0282700-01
Chr11	irgsp1_rep	three_prime_UTR	10081836	10081872	.	-	.	Parent=Os11t0282700-01
Chr11	irgsp1_rep	mRNA	10096301	10102638	.	+	.	ID=Os11t0282800-00;Name=Os11t0282800-00;Locus_id=Os11g0282800;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Similar to POT family protein%2C expressed.;Transcript_evidence=EU972907 (DDBJ);ORF_evidence=Q2R733 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);Oryzabase=23689;TENOR=Os11t0282800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	10096301	10096327	.	+	.	Parent=Os11t0282800-00
Chr11	irgsp1_rep	CDS	10096328	10096418	.	+	0	Parent=Os11t0282800-00
Chr11	irgsp1_rep	CDS	10098547	10098764	.	+	2	Parent=Os11t0282800-00
Chr11	irgsp1_rep	CDS	10100572	10101060	.	+	0	Parent=Os11t0282800-00
Chr11	irgsp1_rep	CDS	10101468	10101592	.	+	0	Parent=Os11t0282800-00
Chr11	irgsp1_rep	CDS	10101750	10102638	.	+	1	Parent=Os11t0282800-00
Chr11	irgsp1_rep	mRNA	10101659	10102857	.	-	.	ID=Os11t0282900-01;Name=Os11t0282900-01;Locus_id=Os11g0282900;Note=Hypothetical protein.;Transcript_evidence=AK111488 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-188-G08;Expression=AK111488;TENOR=Os11t0282900-01;KEGG=Os11t0282900-01
Chr11	irgsp1_rep	five_prime_UTR	10102326	10102857	.	-	.	Parent=Os11t0282900-01
Chr11	irgsp1_rep	CDS	10102023	10102325	.	-	0	Parent=Os11t0282900-01
Chr11	irgsp1_rep	three_prime_UTR	10101659	10102022	.	-	.	Parent=Os11t0282900-01
Chr11	irgsp1_rep	mRNA	10096294	10102730	.	-	.	ID=Os11t0282900-02;Name=Os11t0282900-02;Locus_id=Os11g0282900;Note=Hypothetical protein.;Transcript_evidence=AK242720 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090045D02;TENOR=Os11t0282900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	10101750	10102730	.	-	.	Parent=Os11t0282900-02
Chr11	irgsp1_rep	five_prime_UTR	10101468	10101592	.	-	.	Parent=Os11t0282900-02
Chr11	irgsp1_rep	five_prime_UTR	10101006	10101060	.	-	.	Parent=Os11t0282900-02
Chr11	irgsp1_rep	CDS	10100574	10101005	.	-	0	Parent=Os11t0282900-02
Chr11	irgsp1_rep	three_prime_UTR	10100572	10100573	.	-	.	Parent=Os11t0282900-02
Chr11	irgsp1_rep	three_prime_UTR	10098547	10098764	.	-	.	Parent=Os11t0282900-02
Chr11	irgsp1_rep	three_prime_UTR	10096294	10096418	.	-	.	Parent=Os11t0282900-02
Chr11	irgsp1_rep	mRNA	10133473	10143842	.	+	.	ID=Os11t0283500-01;Name=Os11t0283500-01;Locus_id=Os11g0283500;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=TGF-beta receptor%2C type I/II extracellular region family protein.;Transcript_evidence=AK101066 (DDBJ%2C Best hit),AK105635 (DDBJ%2C Best hit);ORF_evidence=NP_001151924.1 (RefSeq);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J033023F23,001-200-D11;Oryzabase=23690;Expression=AK101066;TENOR=Os11t0283500-01;KEGG=Os11t0283500-01
Chr11	irgsp1_rep	five_prime_UTR	10133473	10133567	.	+	.	Parent=Os11t0283500-01
Chr11	irgsp1_rep	CDS	10133568	10133658	.	+	0	Parent=Os11t0283500-01
Chr11	irgsp1_rep	CDS	10134134	10134351	.	+	2	Parent=Os11t0283500-01
Chr11	irgsp1_rep	CDS	10141447	10141899	.	+	0	Parent=Os11t0283500-01
Chr11	irgsp1_rep	CDS	10142383	10142507	.	+	0	Parent=Os11t0283500-01
Chr11	irgsp1_rep	CDS	10142892	10143756	.	+	1	Parent=Os11t0283500-01
Chr11	irgsp1_rep	three_prime_UTR	10143757	10143842	.	+	.	Parent=Os11t0283500-01
Chr11	irgsp1_rep	mRNA	10185386	10187345	.	+	.	ID=Os11t0284032-00;Name=Os11t0284032-00;Locus_id=Os11g0284032;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Similar to POT family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R719 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);Oryzabase=23691;TENOR=Os11t0284032-00
Chr11	irgsp1_rep	CDS	10185386	10185436	.	+	0	Parent=Os11t0284032-00
Chr11	irgsp1_rep	CDS	10186359	10186811	.	+	0	Parent=Os11t0284032-00
Chr11	irgsp1_rep	CDS	10187151	10187345	.	+	0	Parent=Os11t0284032-00
Chr11	irgsp1_rep	mRNA	10189140	10191810	.	+	.	ID=Os11t0284300-00;Name=Os11t0284300-00;Locus_id=Os11g0284300;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Similar to POT family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R719 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109);Oryzabase=23691;TENOR=Os11t0284300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	10189140	10189207	.	+	0	Parent=Os11t0284300-00
Chr11	irgsp1_rep	CDS	10190931	10191810	.	+	1	Parent=Os11t0284300-00
Chr11	irgsp1_rep	mRNA	10207222	10209022	.	+	.	ID=Os11t0284600-00;Name=Os11t0284600-00;Locus_id=Os11g0284600;Oryzabase Gene Symbol Synonym(s)=OsEnS-142;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 142;Note=Glucoamylase%2C putatuve domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001067698.2 (RefSeq);InterPro=Glucoamylase%2C putatuve (IPR004314);Oryzabase=18428;TENOR=Os11t0284600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	10207222	10207335	.	+	0	Parent=Os11t0284600-00
Chr11	irgsp1_rep	CDS	10207606	10207803	.	+	0	Parent=Os11t0284600-00
Chr11	irgsp1_rep	CDS	10207917	10208072	.	+	0	Parent=Os11t0284600-00
Chr11	irgsp1_rep	CDS	10208279	10208329	.	+	0	Parent=Os11t0284600-00
Chr11	irgsp1_rep	CDS	10208423	10208563	.	+	0	Parent=Os11t0284600-00
Chr11	irgsp1_rep	CDS	10208651	10209022	.	+	0	Parent=Os11t0284600-00
Chr11	irgsp1_rep	mRNA	10230375	10232886	.	-	.	ID=Os11t0284900-01;Name=Os11t0284900-01;Locus_id=Os11g0284900;CGSNL Gene Symbol=GPX5;CGSNL Gene Name=GLUTATHIONE PEROXIDASE 5;Oryzabase Gene Symbol Synonym(s)=OsGpx5%2C GPX5%2C OsGPx05;Oryzabase Gene Name Synonym(s)=glutathione peroxidase 5;Note=Similar to Phospholipid hydroperoxide glutathione peroxidase (EC 1.11.1.9).;Transcript_evidence=AK101583 (DDBJ%2C Best hit),AK101586 (DDBJ%2C Best hit);ORF_evidence=Q53MS9 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: glutathione peroxidase activity (GO:0004602);InterPro=Glutathione peroxidase (IPR000889),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=J033050O15,J033050P15;Oryzabase=11400;Expression=AK101583;TENOR=Os11t0284900-01;KEGG=Os11t0284900-01 (EC:1.11.1.12%2C EC:1.11.1.9)
Chr11	irgsp1_rep	five_prime_UTR	10231712	10232886	.	-	.	Parent=Os11t0284900-01
Chr11	irgsp1_rep	CDS	10231597	10231711	.	-	0	Parent=Os11t0284900-01
Chr11	irgsp1_rep	CDS	10231374	10231492	.	-	2	Parent=Os11t0284900-01
Chr11	irgsp1_rep	CDS	10230653	10230820	.	-	0	Parent=Os11t0284900-01
Chr11	irgsp1_rep	CDS	10230539	10230571	.	-	0	Parent=Os11t0284900-01
Chr11	irgsp1_rep	three_prime_UTR	10230375	10230538	.	-	.	Parent=Os11t0284900-01
Chr11	irgsp1_rep	mRNA	10230653	10231609	.	+	.	ID=Os11t0284950-00;Name=Os11t0284950-00;Locus_id=Os11g0284950;Note=Non-protein coding transcript.;Transcript_evidence=AF366451 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0284950-00
Chr11	irgsp1_rep	exon	10230653	10230808	.	+	.	Parent=Os11t0284950-00
Chr11	irgsp1_rep	exon	10231359	10231609	.	+	.	Parent=Os11t0284950-00
Chr11	irgsp1_rep	mRNA	10235899	10267375	.	-	.	ID=Os11t0285000-01;Name=Os11t0285000-01;Locus_id=Os11g0285000;Oryzabase Gene Symbol Synonym(s)=OsOSC8;Oryzabase Gene Name Synonym(s)=oxidosqualene cyclase 8%2C achilleol B synthase;Note=Similar to Beta-amyrin synthase.;Transcript_evidence=AK070534 (DDBJ%2C Best hit);ORF_evidence=B6SVP8 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: intramolecular transferase activity (GO:0016866);InterPro=Prenyltransferase/squalene oxidase (IPR001330),Terpene synthase%2C conserved site (IPR002365),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930),Squalene cyclase (IPR018333);NIAS_FLcDNA=J023062I08;Oryzabase=10203;Expression=AK070534;TENOR=Os11t0285000-01;KEGG=Os11t0285000-01
Chr11	irgsp1_rep	five_prime_UTR	10267309	10267375	.	-	.	Parent=Os11t0285000-01
Chr11	irgsp1_rep	CDS	10267093	10267308	.	-	0	Parent=Os11t0285000-01
Chr11	irgsp1_rep	CDS	10258708	10258893	.	-	0	Parent=Os11t0285000-01
Chr11	irgsp1_rep	CDS	10255736	10255825	.	-	0	Parent=Os11t0285000-01
Chr11	irgsp1_rep	CDS	10255444	10255635	.	-	0	Parent=Os11t0285000-01
Chr11	irgsp1_rep	CDS	10255119	10255203	.	-	0	Parent=Os11t0285000-01
Chr11	irgsp1_rep	CDS	10252965	10253131	.	-	2	Parent=Os11t0285000-01
Chr11	irgsp1_rep	CDS	10251733	10251921	.	-	0	Parent=Os11t0285000-01
Chr11	irgsp1_rep	CDS	10250259	10250372	.	-	0	Parent=Os11t0285000-01
Chr11	irgsp1_rep	CDS	10242467	10242589	.	-	0	Parent=Os11t0285000-01
Chr11	irgsp1_rep	CDS	10242264	10242383	.	-	0	Parent=Os11t0285000-01
Chr11	irgsp1_rep	CDS	10241539	10241637	.	-	0	Parent=Os11t0285000-01
Chr11	irgsp1_rep	CDS	10240600	10240656	.	-	0	Parent=Os11t0285000-01
Chr11	irgsp1_rep	CDS	10239299	10239345	.	-	0	Parent=Os11t0285000-01
Chr11	irgsp1_rep	CDS	10239077	10239220	.	-	1	Parent=Os11t0285000-01
Chr11	irgsp1_rep	CDS	10238809	10238986	.	-	1	Parent=Os11t0285000-01
Chr11	irgsp1_rep	CDS	10236887	10236961	.	-	0	Parent=Os11t0285000-01
Chr11	irgsp1_rep	CDS	10236720	10236803	.	-	0	Parent=Os11t0285000-01
Chr11	irgsp1_rep	CDS	10236060	10236176	.	-	0	Parent=Os11t0285000-01
Chr11	irgsp1_rep	three_prime_UTR	10235899	10236059	.	-	.	Parent=Os11t0285000-01
Chr11	irgsp1_rep	mRNA	10250653	10251847	.	+	.	ID=Os11t0285932-01;Name=Os11t0285932-01;Locus_id=Os11g0285932;Note=Non-protein coding transcript.;Transcript_evidence=AK289137 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090099D14;TENOR=Os11t0285932-01
Chr11	irgsp1_rep	exon	10250653	10251847	.	+	.	Parent=Os11t0285932-01
Chr11	irgsp1_rep	mRNA	10342267	10342488	.	-	.	ID=Os11t0286400-00;Name=Os11t0286400-00;Locus_id=Os11g0286400;Oryzabase Gene Symbol Synonym(s)=OsOSC9;Oryzabase Gene Name Synonym(s)=oxidosqualene cyclase 9;Note=Similar to Cycloartenol synthase.;Transcript_evidence=ab initio prediction;ORF_evidence=B6SVP8 (UniProt);InterPro=Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930);Oryzabase=17984;TENOR=Os11t0286400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	10342267	10342488	.	-	0	Parent=Os11t0286400-00
Chr11	irgsp1_rep	mRNA	10329661	10333131	.	+	.	ID=Os11t0286500-01;Name=Os11t0286500-01;Locus_id=Os11g0286500;Note=Conserved hypothetical protein.;Transcript_evidence=AK070927 (DDBJ%2C Best hit);ORF_evidence=Q53MU0 (UniProt);NIAS_FLcDNA=J023069B08;TENOR=Os11t0286500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	10329661	10329661	.	+	.	Parent=Os11t0286500-01
Chr11	irgsp1_rep	CDS	10329662	10329838	.	+	0	Parent=Os11t0286500-01
Chr11	irgsp1_rep	three_prime_UTR	10329839	10333131	.	+	.	Parent=Os11t0286500-01
Chr11	irgsp1_rep	mRNA	10329701	10339334	.	+	.	ID=Os11t0286500-02;Name=Os11t0286500-02;Locus_id=Os11g0286500;Note=Similar to cDNA clone:J023069B08%2C full insert sequence.;Transcript_evidence=AK072926 (DDBJ%2C Best hit);ORF_evidence=B7EIL8 (UniProt);NIAS_FLcDNA=J023147F01;TENOR=Os11t0286500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	10329701	10329918	.	+	.	Parent=Os11t0286500-02
Chr11	irgsp1_rep	CDS	10329919	10330030	.	+	0	Parent=Os11t0286500-02
Chr11	irgsp1_rep	CDS	10338353	10338399	.	+	2	Parent=Os11t0286500-02
Chr11	irgsp1_rep	three_prime_UTR	10338400	10338450	.	+	.	Parent=Os11t0286500-02
Chr11	irgsp1_rep	three_prime_UTR	10338566	10339334	.	+	.	Parent=Os11t0286500-02
Chr11	irgsp1_rep	mRNA	10352224	10376610	.	-	.	ID=Os11t0286800-01;Name=Os11t0286800-01;Locus_id=Os11g0286800;Oryzabase Gene Symbol Synonym(s)=OsOSC10;Oryzabase Gene Name Synonym(s)=oxidosqualene cyclase 10;Note=Squalene cyclase domain containing protein.;Transcript_evidence=AK072702 (DDBJ%2C Best hit);ORF_evidence=B6SVP8 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: intramolecular transferase activity (GO:0016866);InterPro=Prenyltransferase/squalene oxidase (IPR001330),Terpene synthase%2C conserved site (IPR002365),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930),Squalene cyclase (IPR018333);NIAS_FLcDNA=J023138M17;Oryzabase=17985;Expression=AK072702;TENOR=Os11t0286800-01;KEGG=Os11t0286800-01
Chr11	irgsp1_rep	five_prime_UTR	10376580	10376610	.	-	.	Parent=Os11t0286800-01
Chr11	irgsp1_rep	CDS	10376379	10376579	.	-	0	Parent=Os11t0286800-01
Chr11	irgsp1_rep	CDS	10367291	10367476	.	-	0	Parent=Os11t0286800-01
Chr11	irgsp1_rep	CDS	10365493	10365582	.	-	0	Parent=Os11t0286800-01
Chr11	irgsp1_rep	CDS	10365216	10365410	.	-	0	Parent=Os11t0286800-01
Chr11	irgsp1_rep	CDS	10364869	10364953	.	-	0	Parent=Os11t0286800-01
Chr11	irgsp1_rep	CDS	10364108	10364274	.	-	2	Parent=Os11t0286800-01
Chr11	irgsp1_rep	CDS	10362181	10362369	.	-	0	Parent=Os11t0286800-01
Chr11	irgsp1_rep	CDS	10360941	10361054	.	-	0	Parent=Os11t0286800-01
Chr11	irgsp1_rep	CDS	10359353	10359475	.	-	0	Parent=Os11t0286800-01
Chr11	irgsp1_rep	CDS	10359153	10359272	.	-	0	Parent=Os11t0286800-01
Chr11	irgsp1_rep	CDS	10357782	10357880	.	-	0	Parent=Os11t0286800-01
Chr11	irgsp1_rep	CDS	10357498	10357554	.	-	0	Parent=Os11t0286800-01
Chr11	irgsp1_rep	CDS	10355813	10355859	.	-	0	Parent=Os11t0286800-01
Chr11	irgsp1_rep	CDS	10355561	10355704	.	-	1	Parent=Os11t0286800-01
Chr11	irgsp1_rep	CDS	10355292	10355469	.	-	1	Parent=Os11t0286800-01
Chr11	irgsp1_rep	CDS	10353105	10353179	.	-	0	Parent=Os11t0286800-01
Chr11	irgsp1_rep	CDS	10352902	10352985	.	-	0	Parent=Os11t0286800-01
Chr11	irgsp1_rep	CDS	10352449	10352565	.	-	0	Parent=Os11t0286800-01
Chr11	irgsp1_rep	three_prime_UTR	10352224	10352448	.	-	.	Parent=Os11t0286800-01
Chr11	irgsp1_rep	mRNA	10360632	10376610	.	-	.	ID=Os11t0286800-02;Name=Os11t0286800-02;Locus_id=Os11g0286800;Oryzabase Gene Symbol Synonym(s)=OsOSC10;Oryzabase Gene Name Synonym(s)=oxidosqualene cyclase 10;Note=Similar to Cycloartenol synthase.;Transcript_evidence=AK100763 (DDBJ%2C Best hit);ORF_evidence=B6SVP8 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Prenyltransferase/squalene oxidase (IPR001330),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930);NIAS_FLcDNA=J023119J04;Oryzabase=17985;Expression=AK100763;TENOR=Os11t0286800-02;KEGG=Os11t0286800-02
Chr11	irgsp1_rep	five_prime_UTR	10376580	10376610	.	-	.	Parent=Os11t0286800-02
Chr11	irgsp1_rep	CDS	10376379	10376579	.	-	0	Parent=Os11t0286800-02
Chr11	irgsp1_rep	CDS	10367291	10367476	.	-	0	Parent=Os11t0286800-02
Chr11	irgsp1_rep	CDS	10365493	10365582	.	-	0	Parent=Os11t0286800-02
Chr11	irgsp1_rep	CDS	10365216	10365410	.	-	0	Parent=Os11t0286800-02
Chr11	irgsp1_rep	CDS	10364869	10364953	.	-	0	Parent=Os11t0286800-02
Chr11	irgsp1_rep	CDS	10364108	10364274	.	-	2	Parent=Os11t0286800-02
Chr11	irgsp1_rep	CDS	10362181	10362369	.	-	0	Parent=Os11t0286800-02
Chr11	irgsp1_rep	CDS	10360905	10361054	.	-	0	Parent=Os11t0286800-02
Chr11	irgsp1_rep	three_prime_UTR	10360632	10360904	.	-	.	Parent=Os11t0286800-02
Chr11	irgsp1_rep	mRNA	10355587	10376608	.	-	.	ID=Os11t0286800-03;Name=Os11t0286800-03;Locus_id=Os11g0286800;Oryzabase Gene Symbol Synonym(s)=OsOSC10;Oryzabase Gene Name Synonym(s)=oxidosqualene cyclase 10;Note=Similar to Cycloartenol synthase.;Transcript_evidence=AK107355 (DDBJ%2C Best hit);ORF_evidence=B6SVP8 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Prenyltransferase/squalene oxidase (IPR001330),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930);NIAS_FLcDNA=002-126-H11;Oryzabase=17985;Expression=AK107355;TENOR=Os11t0286800-03;KEGG=Os11t0286800-03
Chr11	irgsp1_rep	five_prime_UTR	10376580	10376608	.	-	.	Parent=Os11t0286800-03
Chr11	irgsp1_rep	CDS	10376379	10376579	.	-	0	Parent=Os11t0286800-03
Chr11	irgsp1_rep	CDS	10367291	10367476	.	-	0	Parent=Os11t0286800-03
Chr11	irgsp1_rep	CDS	10365493	10365582	.	-	0	Parent=Os11t0286800-03
Chr11	irgsp1_rep	CDS	10365216	10365410	.	-	0	Parent=Os11t0286800-03
Chr11	irgsp1_rep	CDS	10364869	10364953	.	-	0	Parent=Os11t0286800-03
Chr11	irgsp1_rep	CDS	10364108	10364274	.	-	2	Parent=Os11t0286800-03
Chr11	irgsp1_rep	CDS	10360941	10361054	.	-	0	Parent=Os11t0286800-03
Chr11	irgsp1_rep	CDS	10359353	10359475	.	-	0	Parent=Os11t0286800-03
Chr11	irgsp1_rep	CDS	10359153	10359272	.	-	0	Parent=Os11t0286800-03
Chr11	irgsp1_rep	CDS	10357782	10357880	.	-	0	Parent=Os11t0286800-03
Chr11	irgsp1_rep	CDS	10357498	10357554	.	-	0	Parent=Os11t0286800-03
Chr11	irgsp1_rep	CDS	10355813	10355859	.	-	0	Parent=Os11t0286800-03
Chr11	irgsp1_rep	CDS	10355587	10355704	.	-	1	Parent=Os11t0286800-03
Chr11	irgsp1_rep	mRNA	10352345	10364181	.	-	.	ID=Os11t0286800-04;Name=Os11t0286800-04;Locus_id=Os11g0286800;Oryzabase Gene Symbol Synonym(s)=OsOSC10;Oryzabase Gene Name Synonym(s)=oxidosqualene cyclase 10;Note=Similar to Cycloartenol synthase.;Transcript_evidence=AK105077 (DDBJ%2C Best hit);ORF_evidence=B6SVP8 (UniProt);InterPro=Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930);NIAS_FLcDNA=001-045-F10;Oryzabase=17985;Expression=AK105077;TENOR=Os11t0286800-04;KEGG=Os11t0286800-04 (EC:5.4.99.7)
Chr11	irgsp1_rep	five_prime_UTR	10364180	10364181	.	-	.	Parent=Os11t0286800-04
Chr11	irgsp1_rep	CDS	10364108	10364179	.	-	0	Parent=Os11t0286800-04
Chr11	irgsp1_rep	CDS	10362181	10362369	.	-	0	Parent=Os11t0286800-04
Chr11	irgsp1_rep	CDS	10360941	10361054	.	-	0	Parent=Os11t0286800-04
Chr11	irgsp1_rep	CDS	10359353	10359475	.	-	0	Parent=Os11t0286800-04
Chr11	irgsp1_rep	CDS	10359153	10359272	.	-	0	Parent=Os11t0286800-04
Chr11	irgsp1_rep	CDS	10357782	10357880	.	-	0	Parent=Os11t0286800-04
Chr11	irgsp1_rep	CDS	10357498	10357554	.	-	0	Parent=Os11t0286800-04
Chr11	irgsp1_rep	CDS	10355809	10355859	.	-	0	Parent=Os11t0286800-04
Chr11	irgsp1_rep	three_prime_UTR	10355800	10355808	.	-	.	Parent=Os11t0286800-04
Chr11	irgsp1_rep	three_prime_UTR	10355561	10355704	.	-	.	Parent=Os11t0286800-04
Chr11	irgsp1_rep	three_prime_UTR	10355292	10355469	.	-	.	Parent=Os11t0286800-04
Chr11	irgsp1_rep	three_prime_UTR	10353105	10353179	.	-	.	Parent=Os11t0286800-04
Chr11	irgsp1_rep	three_prime_UTR	10352902	10352985	.	-	.	Parent=Os11t0286800-04
Chr11	irgsp1_rep	three_prime_UTR	10352345	10352565	.	-	.	Parent=Os11t0286800-04
Chr11	irgsp1_rep	mRNA	10371608	10372177	.	+	.	ID=Os11t0287000-01;Name=Os11t0287000-01;Locus_id=Os11g0287000;Note=Conserved hypothetical protein.;Transcript_evidence=AK105144 (DDBJ%2C Best hit);ORF_evidence=B9GAC3 (UniProt);NIAS_FLcDNA=001-103-B08;TENOR=Os11t0287000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	10371608	10371905	.	+	.	Parent=Os11t0287000-01
Chr11	irgsp1_rep	CDS	10371906	10372061	.	+	0	Parent=Os11t0287000-01
Chr11	irgsp1_rep	three_prime_UTR	10372062	10372177	.	+	.	Parent=Os11t0287000-01
Chr11	irgsp1_rep	mRNA	10373993	10374618	.	+	.	ID=Os11t0287100-00;Name=Os11t0287100-00;Locus_id=Os11g0287100;Note=Similar to disulfide oxidoreductase/ monooxygenase/ oxidoreductase.;Transcript_evidence=AK355181 (DDBJ);ORF_evidence=NP_001147115.1 (RefSeq);TENOR=Os11t0287100-00
Chr11	irgsp1_rep	five_prime_UTR	10373993	10374063	.	+	.	Parent=Os11t0287100-00
Chr11	irgsp1_rep	CDS	10374064	10374618	.	+	0	Parent=Os11t0287100-00
Chr11	irgsp1_rep	mRNA	10430857	10431715	.	+	.	ID=Os11t0288350-00;Name=Os11t0288350-00;Locus_id=Os11g0288350;Note=Non-protein coding transcript.;Transcript_evidence=CU406738 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os11t0288350-00
Chr11	irgsp1_rep	exon	10430857	10431076	.	+	.	Parent=Os11t0288350-00
Chr11	irgsp1_rep	exon	10431326	10431715	.	+	.	Parent=Os11t0288350-00
Chr11	irgsp1_rep	mRNA	10474866	10477658	.	+	.	ID=Os11t0289700-01;Name=Os11t0289700-01;Locus_id=Os11g0289700;Note=CytoChrome P450 family protein.;Transcript_evidence=AK060292 (DDBJ%2C Best hit),AK065302 (DDBJ%2C Best hit);ORF_evidence=Q5R1J3 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=001-006-E01,J013002N23;Oryzabase=22503;Expression=AK060292;TENOR=Os11t0289700-01;KEGG=Os11t0289700-01
Chr11	irgsp1_rep	five_prime_UTR	10474866	10474952	.	+	.	Parent=Os11t0289700-01
Chr11	irgsp1_rep	CDS	10474953	10475182	.	+	0	Parent=Os11t0289700-01
Chr11	irgsp1_rep	CDS	10475341	10475665	.	+	1	Parent=Os11t0289700-01
Chr11	irgsp1_rep	CDS	10475763	10475915	.	+	0	Parent=Os11t0289700-01
Chr11	irgsp1_rep	CDS	10476040	10476291	.	+	0	Parent=Os11t0289700-01
Chr11	irgsp1_rep	CDS	10476411	10476500	.	+	0	Parent=Os11t0289700-01
Chr11	irgsp1_rep	CDS	10476598	10476676	.	+	0	Parent=Os11t0289700-01
Chr11	irgsp1_rep	CDS	10476767	10476873	.	+	2	Parent=Os11t0289700-01
Chr11	irgsp1_rep	CDS	10476976	10477103	.	+	0	Parent=Os11t0289700-01
Chr11	irgsp1_rep	CDS	10477384	10477474	.	+	1	Parent=Os11t0289700-01
Chr11	irgsp1_rep	three_prime_UTR	10477475	10477658	.	+	.	Parent=Os11t0289700-01
Chr11	irgsp1_rep	mRNA	10538027	10539355	.	-	.	ID=Os11t0290600-01;Name=Os11t0290600-01;Locus_id=Os11g0290600;Note=Conserved hypothetical protein.;Transcript_evidence=AK070833 (DDBJ%2C Best hit);ORF_evidence=Q53MR6 (UniProt);NIAS_FLcDNA=J023070K11;TENOR=Os11t0290600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	10539175	10539355	.	-	.	Parent=Os11t0290600-01
Chr11	irgsp1_rep	CDS	10538999	10539174	.	-	0	Parent=Os11t0290600-01
Chr11	irgsp1_rep	CDS	10538823	10538868	.	-	1	Parent=Os11t0290600-01
Chr11	irgsp1_rep	three_prime_UTR	10538027	10538822	.	-	.	Parent=Os11t0290600-01
Chr11	irgsp1_rep	mRNA	10575509	10582899	.	-	.	ID=Os11t0291000-00;Name=Os11t0291000-00;Locus_id=Os11g0291000;Note=Similar to Beta-D-xylosidase.;Transcript_evidence=AK361831 (DDBJ);ORF_evidence=Q53MP2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 3%2C N-terminal (IPR001764),Glycoside hydrolase%2C family 3%2C C-terminal (IPR002772),Glycoside hydrolase%2C superfamily (IPR017853);TENOR=Os11t0291000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	10582261	10582899	.	-	0	Parent=Os11t0291000-00
Chr11	irgsp1_rep	CDS	10580780	10580949	.	-	0	Parent=Os11t0291000-00
Chr11	irgsp1_rep	CDS	10580527	10580608	.	-	1	Parent=Os11t0291000-00
Chr11	irgsp1_rep	CDS	10575509	10576933	.	-	0	Parent=Os11t0291000-00
Chr11	irgsp1_rep	mRNA	10575531	10583006	.	+	.	ID=Os11t0291201-00;Name=Os11t0291201-00;Locus_id=Os11g0291201;Note=Hypothetical protein.;Transcript_evidence=tplb0030f15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0291201-00
Chr11	irgsp1_rep	five_prime_UTR	10575531	10576888	.	+	.	Parent=Os11t0291201-00
Chr11	irgsp1_rep	five_prime_UTR	10580500	10580603	.	+	.	Parent=Os11t0291201-00
Chr11	irgsp1_rep	five_prime_UTR	10580775	10580925	.	+	.	Parent=Os11t0291201-00
Chr11	irgsp1_rep	five_prime_UTR	10582232	10582453	.	+	.	Parent=Os11t0291201-00
Chr11	irgsp1_rep	CDS	10582454	10582999	.	+	0	Parent=Os11t0291201-00
Chr11	irgsp1_rep	three_prime_UTR	10583000	10583006	.	+	.	Parent=Os11t0291201-00
Chr11	irgsp1_rep	mRNA	10609814	10610083	.	-	.	ID=Os11t0291450-00;Name=Os11t0291450-00;Locus_id=Os11g0291450;Note=Non-protein coding transcript.;Transcript_evidence=CT835643 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os11t0291450-00
Chr11	irgsp1_rep	exon	10609814	10610083	.	-	.	Parent=Os11t0291450-00
Chr11	irgsp1_rep	mRNA	10610057	10615844	.	+	.	ID=Os11t0291475-00;Name=Os11t0291475-00;Locus_id=Os11g0291475;Note=Hypothetical protein.;Transcript_evidence=tplb0030f15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0291475-00
Chr11	irgsp1_rep	five_prime_UTR	10610057	10610111	.	+	.	Parent=Os11t0291475-00
Chr11	irgsp1_rep	CDS	10610112	10611428	.	+	0	Parent=Os11t0291475-00
Chr11	irgsp1_rep	CDS	10611545	10611634	.	+	0	Parent=Os11t0291475-00
Chr11	irgsp1_rep	three_prime_UTR	10611635	10611652	.	+	.	Parent=Os11t0291475-00
Chr11	irgsp1_rep	three_prime_UTR	10612183	10612342	.	+	.	Parent=Os11t0291475-00
Chr11	irgsp1_rep	three_prime_UTR	10612451	10612723	.	+	.	Parent=Os11t0291475-00
Chr11	irgsp1_rep	three_prime_UTR	10615434	10615844	.	+	.	Parent=Os11t0291475-00
Chr11	irgsp1_rep	mRNA	10614686	10615884	.	-	.	ID=Os11t0291500-01;Name=Os11t0291500-01;Locus_id=Os11g0291500;Note=Similar to Beta-D-xylosidase.;Transcript_evidence=AK108558 (DDBJ%2C Best hit);ORF_evidence=Q53MP2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 3%2C N-terminal (IPR001764),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=002-145-A01;TENOR=Os11t0291500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	10615839	10615884	.	-	.	Parent=Os11t0291500-01
Chr11	irgsp1_rep	CDS	10615410	10615838	.	-	0	Parent=Os11t0291500-01
Chr11	irgsp1_rep	three_prime_UTR	10614686	10615409	.	-	.	Parent=Os11t0291500-01
Chr11	irgsp1_rep	mRNA	10637691	10638122	.	+	.	ID=Os11t0291800-00;Name=Os11t0291800-00;Locus_id=Os11g0291800;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os11t0291800-00
Chr11	irgsp1_rep	CDS	10637691	10638122	.	+	0	Parent=Os11t0291800-00
Chr11	irgsp1_rep	mRNA	10637803	10638226	.	-	.	ID=Os11t0291900-01;Name=Os11t0291900-01;Locus_id=Os11g0291900;Note=Hypothetical gene.;Transcript_evidence=AK063221 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-112-E05;Expression=AK063221;TENOR=Os11t0291900-01;KEGG=Os11t0291900-01
Chr11	irgsp1_rep	five_prime_UTR	10638166	10638226	.	-	.	Parent=Os11t0291900-01
Chr11	irgsp1_rep	CDS	10637803	10638165	.	-	0	Parent=Os11t0291900-01
Chr11	irgsp1_rep	mRNA	10648621	10654920	.	-	.	ID=Os11t0292050-00;Name=Os11t0292050-00;Locus_id=Os11g0292050;CGSNL Gene Symbol=DLN248;CGSNL Gene Name=DLN REPRESSOR 248;Oryzabase Gene Symbol Synonym(s)=OsDLN248;Oryzabase Gene Name Synonym(s)=DLN repressor 248%2C DLN motif protein 248;Note=Similar to PHD-finger family protein%2C expressed.;Transcript_evidence=AK353660 (DDBJ);ORF_evidence=Q53MN0 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-finger (IPR019787);Oryzabase=23236;TENOR=Os11t0292050-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	10654829	10654920	.	-	0	Parent=Os11t0292050-00
Chr11	irgsp1_rep	CDS	10654450	10654616	.	-	1	Parent=Os11t0292050-00
Chr11	irgsp1_rep	CDS	10654215	10654222	.	-	2	Parent=Os11t0292050-00
Chr11	irgsp1_rep	three_prime_UTR	10654079	10654214	.	-	.	Parent=Os11t0292050-00
Chr11	irgsp1_rep	three_prime_UTR	10652580	10652740	.	-	.	Parent=Os11t0292050-00
Chr11	irgsp1_rep	three_prime_UTR	10652040	10652441	.	-	.	Parent=Os11t0292050-00
Chr11	irgsp1_rep	three_prime_UTR	10651564	10651938	.	-	.	Parent=Os11t0292050-00
Chr11	irgsp1_rep	three_prime_UTR	10651102	10651332	.	-	.	Parent=Os11t0292050-00
Chr11	irgsp1_rep	three_prime_UTR	10650875	10650999	.	-	.	Parent=Os11t0292050-00
Chr11	irgsp1_rep	three_prime_UTR	10650664	10650785	.	-	.	Parent=Os11t0292050-00
Chr11	irgsp1_rep	three_prime_UTR	10649468	10649751	.	-	.	Parent=Os11t0292050-00
Chr11	irgsp1_rep	three_prime_UTR	10649085	10649208	.	-	.	Parent=Os11t0292050-00
Chr11	irgsp1_rep	three_prime_UTR	10648621	10648988	.	-	.	Parent=Os11t0292050-00
Chr11	irgsp1_rep	mRNA	10691940	10698318	.	+	.	ID=Os11t0293300-01;Name=Os11t0293300-01;Locus_id=Os11g0293300;Note=Survival motor neuron interacting protein 1 family protein.;Transcript_evidence=AK107624 (DDBJ%2C Best hit);ORF_evidence=NP_001151381.1 (RefSeq);GO=Biological Process: spliceosome assembly (GO:0000245),Biological Process: nuclear mRNA splicing%2C via spliceosome (GO:0000398);InterPro=Survival motor neuron interacting protein 1 (IPR007022);NIAS_FLcDNA=002-131-D08;Expression=AK107624;TENOR=Os11t0293300-01;KEGG=Os11t0293300-01
Chr11	irgsp1_rep	five_prime_UTR	10691940	10691977	.	+	.	Parent=Os11t0293300-01
Chr11	irgsp1_rep	CDS	10691978	10692254	.	+	0	Parent=Os11t0293300-01
Chr11	irgsp1_rep	CDS	10692365	10692614	.	+	2	Parent=Os11t0293300-01
Chr11	irgsp1_rep	CDS	10696303	10696480	.	+	1	Parent=Os11t0293300-01
Chr11	irgsp1_rep	CDS	10697643	10698038	.	+	0	Parent=Os11t0293300-01
Chr11	irgsp1_rep	three_prime_UTR	10698039	10698318	.	+	.	Parent=Os11t0293300-01
Chr11	irgsp1_rep	mRNA	10732822	10734815	.	+	.	ID=Os11t0293800-00;Name=Os11t0293800-00;Locus_id=Os11g0293800;CGSNL Gene Symbol=FTL11;CGSNL Gene Name=FLOWERING TIME LIKE GENE 11;Oryzabase Gene Symbol Synonym(s)=OsFTL11;Oryzabase Gene Name Synonym(s)=FT-like gene 11;Note=Similar to ZCN17.;Transcript_evidence=AK367970 (DDBJ);ORF_evidence=A9LLZ1 (UniProt);InterPro=Phosphatidylethanolamine-binding%2C conserved site (IPR001858),Phosphatidylethanolamine-binding protein PEBP (IPR008914);Oryzabase=11232;TENOR=Os11t0293800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	10732822	10732873	.	+	.	Parent=Os11t0293800-00
Chr11	irgsp1_rep	CDS	10732874	10733113	.	+	0	Parent=Os11t0293800-00
Chr11	irgsp1_rep	CDS	10733778	10733839	.	+	0	Parent=Os11t0293800-00
Chr11	irgsp1_rep	CDS	10734043	10734083	.	+	1	Parent=Os11t0293800-00
Chr11	irgsp1_rep	CDS	10734569	10734798	.	+	2	Parent=Os11t0293800-00
Chr11	irgsp1_rep	three_prime_UTR	10734799	10734815	.	+	.	Parent=Os11t0293800-00
Chr11	irgsp1_rep	mRNA	10738489	10747538	.	-	.	ID=Os11t0293900-01;Name=Os11t0293900-01;Locus_id=Os11g0293900;Note=UBX domain containing protein.;Transcript_evidence=AK067658 (DDBJ%2C Best hit);ORF_evidence=Q53MI0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=UBX (IPR001012),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=J013114I10;Expression=AK067658;TENOR=Os11t0293900-01;KEGG=Os11t0293900-01
Chr11	irgsp1_rep	five_prime_UTR	10747312	10747538	.	-	.	Parent=Os11t0293900-01
Chr11	irgsp1_rep	CDS	10745764	10745863	.	-	0	Parent=Os11t0293900-01
Chr11	irgsp1_rep	CDS	10744883	10744935	.	-	2	Parent=Os11t0293900-01
Chr11	irgsp1_rep	CDS	10744485	10744566	.	-	0	Parent=Os11t0293900-01
Chr11	irgsp1_rep	CDS	10743795	10743860	.	-	2	Parent=Os11t0293900-01
Chr11	irgsp1_rep	CDS	10743619	10743686	.	-	2	Parent=Os11t0293900-01
Chr11	irgsp1_rep	CDS	10741458	10741670	.	-	0	Parent=Os11t0293900-01
Chr11	irgsp1_rep	CDS	10740865	10741375	.	-	0	Parent=Os11t0293900-01
Chr11	irgsp1_rep	CDS	10739091	10739363	.	-	2	Parent=Os11t0293900-01
Chr11	irgsp1_rep	CDS	10738720	10738961	.	-	2	Parent=Os11t0293900-01
Chr11	irgsp1_rep	three_prime_UTR	10738489	10738719	.	-	.	Parent=Os11t0293900-01
Chr11	irgsp1_rep	mRNA	10738914	10747453	.	-	.	ID=Os11t0293900-02;Name=Os11t0293900-02;Locus_id=Os11g0293900;Note=Similar to UBX domain containing protein%2C expressed.;Transcript_evidence=AK071663 (DDBJ%2C Best hit);ORF_evidence=Q53MI0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=UBX (IPR001012);NIAS_FLcDNA=J023106G11;TENOR=Os11t0293900-02
Chr11	irgsp1_rep	five_prime_UTR	10747312	10747453	.	-	.	Parent=Os11t0293900-02
Chr11	irgsp1_rep	CDS	10745764	10745863	.	-	0	Parent=Os11t0293900-02
Chr11	irgsp1_rep	CDS	10744883	10744935	.	-	2	Parent=Os11t0293900-02
Chr11	irgsp1_rep	CDS	10744485	10744566	.	-	0	Parent=Os11t0293900-02
Chr11	irgsp1_rep	CDS	10743795	10743860	.	-	2	Parent=Os11t0293900-02
Chr11	irgsp1_rep	CDS	10743619	10743686	.	-	2	Parent=Os11t0293900-02
Chr11	irgsp1_rep	CDS	10741458	10741670	.	-	0	Parent=Os11t0293900-02
Chr11	irgsp1_rep	CDS	10740865	10741375	.	-	0	Parent=Os11t0293900-02
Chr11	irgsp1_rep	CDS	10739091	10739363	.	-	2	Parent=Os11t0293900-02
Chr11	irgsp1_rep	CDS	10738914	10738961	.	-	2	Parent=Os11t0293900-02
Chr11	irgsp1_rep	mRNA	10760321	10761654	.	-	.	ID=Os11t0294101-00;Name=Os11t0294101-00;Locus_id=Os11g0294101;Note=Non-protein coding transcript.;Transcript_evidence=EU941497 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0294101-00
Chr11	irgsp1_rep	exon	10760321	10761654	.	-	.	Parent=Os11t0294101-00
Chr11	irgsp1_rep	mRNA	10770248	10782557	.	-	.	ID=Os11t0294300-01;Name=Os11t0294300-01;Locus_id=Os11g0294300;Note=Conserved hypothetical protein.;Transcript_evidence=AK070429 (DDBJ%2C Best hit);ORF_evidence=B9GAD4 (UniProt);NIAS_FLcDNA=J023049N07;TENOR=Os11t0294300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	10780787	10782557	.	-	.	Parent=Os11t0294300-01
Chr11	irgsp1_rep	five_prime_UTR	10780310	10780685	.	-	.	Parent=Os11t0294300-01
Chr11	irgsp1_rep	five_prime_UTR	10777773	10777836	.	-	.	Parent=Os11t0294300-01
Chr11	irgsp1_rep	CDS	10777453	10777772	.	-	0	Parent=Os11t0294300-01
Chr11	irgsp1_rep	CDS	10776651	10776887	.	-	1	Parent=Os11t0294300-01
Chr11	irgsp1_rep	CDS	10771336	10771402	.	-	1	Parent=Os11t0294300-01
Chr11	irgsp1_rep	three_prime_UTR	10771163	10771335	.	-	.	Parent=Os11t0294300-01
Chr11	irgsp1_rep	three_prime_UTR	10770248	10770784	.	-	.	Parent=Os11t0294300-01
Chr11	irgsp1_rep	mRNA	10771360	10780497	.	-	.	ID=Os11t0294300-02;Name=Os11t0294300-02;Locus_id=Os11g0294300;Note=Hypothetical conserved gene.;Transcript_evidence=AK108665 (DDBJ%2C Best hit);ORF_evidence=B9GAD4 (UniProt);NIAS_FLcDNA=002-148-G03;Expression=AK108665;TENOR=Os11t0294300-02;KEGG=Os11t0294300-02
Chr11	irgsp1_rep	five_prime_UTR	10780310	10780497	.	-	.	Parent=Os11t0294300-02
Chr11	irgsp1_rep	five_prime_UTR	10777773	10777836	.	-	.	Parent=Os11t0294300-02
Chr11	irgsp1_rep	CDS	10777453	10777772	.	-	0	Parent=Os11t0294300-02
Chr11	irgsp1_rep	CDS	10776651	10776887	.	-	1	Parent=Os11t0294300-02
Chr11	irgsp1_rep	CDS	10772266	10772320	.	-	1	Parent=Os11t0294300-02
Chr11	irgsp1_rep	three_prime_UTR	10772232	10772265	.	-	.	Parent=Os11t0294300-02
Chr11	irgsp1_rep	three_prime_UTR	10771360	10771823	.	-	.	Parent=Os11t0294300-02
Chr11	irgsp1_rep	mRNA	10776499	10778076	.	+	.	ID=Os11t0294400-01;Name=Os11t0294400-01;Locus_id=Os11g0294400;Note=Similar to WW domain containing protein%2C expressed.;Transcript_evidence=AK062429 (DDBJ%2C Best hit);ORF_evidence=Q2QVE4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WW/Rsp5/WWP (IPR001202);NIAS_FLcDNA=001-102-H07;TENOR=Os11t0294400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	10776499	10776623	.	+	.	Parent=Os11t0294400-01
Chr11	irgsp1_rep	CDS	10776624	10776893	.	+	0	Parent=Os11t0294400-01
Chr11	irgsp1_rep	CDS	10777435	10777845	.	+	0	Parent=Os11t0294400-01
Chr11	irgsp1_rep	three_prime_UTR	10777846	10778076	.	+	.	Parent=Os11t0294400-01
Chr11	irgsp1_rep	mRNA	10777699	10778066	.	+	.	ID=Os11t0294400-02;Name=Os11t0294400-02;Locus_id=Os11g0294400;Note=Similar to WW domain containing protein.;Transcript_evidence=AK105190 (DDBJ%2C Best hit);ORF_evidence=NP_001152094.1 (RefSeq);NIAS_FLcDNA=001-107-B08;Expression=AK105190;TENOR=Os11t0294400-02;KEGG=Os11t0294400-02
Chr11	irgsp1_rep	CDS	10777699	10777845	.	+	0	Parent=Os11t0294400-02
Chr11	irgsp1_rep	three_prime_UTR	10777846	10778066	.	+	.	Parent=Os11t0294400-02
Chr11	irgsp1_rep	mRNA	10786674	10791727	.	-	.	ID=Os11t0294600-01;Name=Os11t0294600-01;Locus_id=Os11g0294600;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK101298 (DDBJ%2C Best hit);ORF_evidence=NP_001148273.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J033033J06;Expression=AK101298;TENOR=Os11t0294600-01;KEGG=Os11t0294600-01
Chr11	irgsp1_rep	five_prime_UTR	10791390	10791727	.	-	.	Parent=Os11t0294600-01
Chr11	irgsp1_rep	five_prime_UTR	10789913	10789989	.	-	.	Parent=Os11t0294600-01
Chr11	irgsp1_rep	CDS	10789847	10789912	.	-	0	Parent=Os11t0294600-01
Chr11	irgsp1_rep	CDS	10788774	10788948	.	-	0	Parent=Os11t0294600-01
Chr11	irgsp1_rep	CDS	10788540	10788680	.	-	2	Parent=Os11t0294600-01
Chr11	irgsp1_rep	CDS	10787816	10787925	.	-	2	Parent=Os11t0294600-01
Chr11	irgsp1_rep	CDS	10787249	10787278	.	-	0	Parent=Os11t0294600-01
Chr11	irgsp1_rep	three_prime_UTR	10786674	10787248	.	-	.	Parent=Os11t0294600-01
Chr11	irgsp1_rep	mRNA	10786668	10791694	.	-	.	ID=Os11t0294600-02;Name=Os11t0294600-02;Locus_id=Os11g0294600;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK107153 (DDBJ%2C Best hit);ORF_evidence=NP_001148273.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=002-124-E05;TENOR=Os11t0294600-02
Chr11	irgsp1_rep	five_prime_UTR	10791390	10791694	.	-	.	Parent=Os11t0294600-02
Chr11	irgsp1_rep	five_prime_UTR	10789913	10789989	.	-	.	Parent=Os11t0294600-02
Chr11	irgsp1_rep	CDS	10789847	10789912	.	-	0	Parent=Os11t0294600-02
Chr11	irgsp1_rep	CDS	10788774	10788948	.	-	0	Parent=Os11t0294600-02
Chr11	irgsp1_rep	CDS	10788540	10788680	.	-	2	Parent=Os11t0294600-02
Chr11	irgsp1_rep	CDS	10787816	10787925	.	-	2	Parent=Os11t0294600-02
Chr11	irgsp1_rep	CDS	10787249	10787278	.	-	0	Parent=Os11t0294600-02
Chr11	irgsp1_rep	three_prime_UTR	10786668	10787248	.	-	.	Parent=Os11t0294600-02
Chr11	irgsp1_rep	mRNA	10815078	10816611	.	+	.	ID=Os11t0294800-01;Name=Os11t0294800-01;Locus_id=Os11g0294800;CGSNL Gene Symbol=RLCK324;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 324;Oryzabase Gene Symbol Synonym(s)=OsRLCK324;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 324;Note=Similar to OSIGBa0147J19.10 protein.;Transcript_evidence=AK109559 (DDBJ%2C Best hit);ORF_evidence=Q01KL9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=002-126-B02;Oryzabase=18995;TENOR=Os11t0294800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	10815078	10815078	.	+	.	Parent=Os11t0294800-01
Chr11	irgsp1_rep	CDS	10815079	10815663	.	+	0	Parent=Os11t0294800-01
Chr11	irgsp1_rep	three_prime_UTR	10815664	10816611	.	+	.	Parent=Os11t0294800-01
Chr11	irgsp1_rep	mRNA	10825629	10831894	.	+	.	ID=Os11t0295000-01;Name=Os11t0295000-01;Locus_id=Os11g0295000;Note=Similar to histidine triad family protein / HIT family protein.;Transcript_evidence=AK109826 (DDBJ%2C Best hit);ORF_evidence=NP_974907.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Histidine triad (HIT) protein (IPR001310),Histidine triad-like motif (IPR011146),Histidine triad motif (IPR011151),Histidine triad%2C conserved site (IPR019808);NIAS_FLcDNA=002-148-B05;TENOR=Os11t0295000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	10825629	10825883	.	+	.	Parent=Os11t0295000-01
Chr11	irgsp1_rep	five_prime_UTR	10827257	10827937	.	+	.	Parent=Os11t0295000-01
Chr11	irgsp1_rep	CDS	10827938	10827974	.	+	0	Parent=Os11t0295000-01
Chr11	irgsp1_rep	CDS	10830661	10830716	.	+	2	Parent=Os11t0295000-01
Chr11	irgsp1_rep	CDS	10831066	10831119	.	+	0	Parent=Os11t0295000-01
Chr11	irgsp1_rep	CDS	10831241	10831369	.	+	0	Parent=Os11t0295000-01
Chr11	irgsp1_rep	three_prime_UTR	10831370	10831894	.	+	.	Parent=Os11t0295000-01
Chr11	irgsp1_rep	mRNA	10863409	10868622	.	+	.	ID=Os11t0295900-01;Name=Os11t0295900-01;Locus_id=Os11g0295900;RAP-DB Gene Symbol Synonym(s)=OsASGR-BBML1%2C OsBBM1;RAP-DB Gene Name Synonym(s)=Apospory-specific Genome Region (ASGR)-BABY-BOOM LIKE (BBML) 1;CGSNL Gene Symbol=PLT6;CGSNL Gene Name=PLETHORA 6;Oryzabase Gene Symbol Synonym(s)=OsPLT6%2C AP2/EREBP#118%2C AP2/EREBP118%2C BBM1%2C OsBBM1%2C OsBBML1%2C BBML1%2C OsASGR-BBML1%2C ASGR-BBML1;Oryzabase Gene Name Synonym(s)=Plethora 6%2C APETALA2/ethylene-responsive element binding protein 118%2C BABY BOOM1%2C BABY BOOM 1%2C Apospory-specific Genome Region-BABY-BOOM LIKE 1%2C BABY-BOOM LIKE 1;Note=AP2-transcription factor%2C Initiation of zygotic development;Transcript_evidence=AK287621;ORF_evidence=A0A0N7KSS8;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-binding transcription factor activity (GO:0003700);InterPro=DNA-binding domain superfamily (IPR016177),AP2/ERF domain superfamily (IPR036955),AP2/ERF domain (IPR001471);NIAS_FLcDNA=J065066I09;Manual Curation=February 27%2C 2019;Literature_PMID=30801122;Oryzabase=10469;TENOR=Os11t0295900-01;KEGG=Os11t0295900-01
Chr11	irgsp1_rep	five_prime_UTR	10863409	10863410	.	+	.	Parent=Os11t0295900-01
Chr11	irgsp1_rep	CDS	10863411	10863499	.	+	0	Parent=Os11t0295900-01
Chr11	irgsp1_rep	CDS	10863606	10864037	.	+	1	Parent=Os11t0295900-01
Chr11	irgsp1_rep	CDS	10865914	10865996	.	+	1	Parent=Os11t0295900-01
Chr11	irgsp1_rep	CDS	10866129	10866137	.	+	2	Parent=Os11t0295900-01
Chr11	irgsp1_rep	CDS	10866241	10866329	.	+	2	Parent=Os11t0295900-01
Chr11	irgsp1_rep	CDS	10866439	10866512	.	+	0	Parent=Os11t0295900-01
Chr11	irgsp1_rep	CDS	10866594	10866644	.	+	1	Parent=Os11t0295900-01
Chr11	irgsp1_rep	CDS	10866948	10867024	.	+	1	Parent=Os11t0295900-01
Chr11	irgsp1_rep	CDS	10867498	10868273	.	+	2	Parent=Os11t0295900-01
Chr11	irgsp1_rep	three_prime_UTR	10868274	10868622	.	+	.	Parent=Os11t0295900-01
Chr11	irgsp1_rep	mRNA	10869642	10870364	.	-	.	ID=Os11t0296001-01;Name=Os11t0296001-01;Locus_id=Os11g0296001;Note=Hypothetical gene.;Transcript_evidence=AK242988 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090095B01;TENOR=Os11t0296001-01;KEGG=Os11t0296001-01
Chr11	irgsp1_rep	CDS	10870128	10870364	.	-	0	Parent=Os11t0296001-01
Chr11	irgsp1_rep	three_prime_UTR	10869642	10870127	.	-	.	Parent=Os11t0296001-01
Chr11	irgsp1_rep	mRNA	10887102	10892897	.	+	.	ID=Os11t0296500-01;Name=Os11t0296500-01;Locus_id=Os11g0296500;Note=Zinc finger%2C CCHC retroviral-type domain containing protein.;Transcript_evidence=AK069633 (DDBJ%2C Best hit);ORF_evidence=B8BK52 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Zinc finger%2C CCHC retroviral-type (IPR013084);NIAS_FLcDNA=J023024O16;Expression=AK069633;TENOR=Os11t0296500-01;KEGG=Os11t0296500-01
Chr11	irgsp1_rep	five_prime_UTR	10887102	10888546	.	+	.	Parent=Os11t0296500-01
Chr11	irgsp1_rep	CDS	10888547	10889785	.	+	0	Parent=Os11t0296500-01
Chr11	irgsp1_rep	three_prime_UTR	10889786	10889790	.	+	.	Parent=Os11t0296500-01
Chr11	irgsp1_rep	three_prime_UTR	10890224	10890516	.	+	.	Parent=Os11t0296500-01
Chr11	irgsp1_rep	three_prime_UTR	10890738	10890871	.	+	.	Parent=Os11t0296500-01
Chr11	irgsp1_rep	three_prime_UTR	10891969	10892139	.	+	.	Parent=Os11t0296500-01
Chr11	irgsp1_rep	three_prime_UTR	10892469	10892897	.	+	.	Parent=Os11t0296500-01
Chr11	irgsp1_rep	mRNA	10911131	10915851	.	+	.	ID=Os11t0296800-01;Name=Os11t0296800-01;Locus_id=Os11g0296800;Note=Chromatin SPT2 family protein.;Transcript_evidence=AK069908 (DDBJ%2C Best hit),AK102899 (DDBJ%2C Best hit);ORF_evidence=Q53MG0 (UniProt);InterPro=Chromatin SPT2 (IPR013256);NIAS_FLcDNA=J023036L08,J033112P19;TENOR=Os11t0296800-01
Chr11	irgsp1_rep	CDS	10911131	10911432	.	+	0	Parent=Os11t0296800-01
Chr11	irgsp1_rep	CDS	10911746	10911809	.	+	1	Parent=Os11t0296800-01
Chr11	irgsp1_rep	CDS	10912019	10912263	.	+	0	Parent=Os11t0296800-01
Chr11	irgsp1_rep	CDS	10912843	10912963	.	+	1	Parent=Os11t0296800-01
Chr11	irgsp1_rep	CDS	10913037	10913111	.	+	0	Parent=Os11t0296800-01
Chr11	irgsp1_rep	CDS	10913202	10913328	.	+	0	Parent=Os11t0296800-01
Chr11	irgsp1_rep	CDS	10913410	10914155	.	+	2	Parent=Os11t0296800-01
Chr11	irgsp1_rep	CDS	10914281	10914411	.	+	0	Parent=Os11t0296800-01
Chr11	irgsp1_rep	CDS	10914763	10914852	.	+	1	Parent=Os11t0296800-01
Chr11	irgsp1_rep	CDS	10915216	10915321	.	+	1	Parent=Os11t0296800-01
Chr11	irgsp1_rep	three_prime_UTR	10915322	10915851	.	+	.	Parent=Os11t0296800-01
Chr11	irgsp1_rep	mRNA	10918543	10919959	.	-	.	ID=Os11t0296900-00;Name=Os11t0296900-00;Locus_id=Os11g0296900;CGSNL Gene Symbol=SMT1-3;CGSNL Gene Name=STEROL METHYLTRANSFERASE 1-3;Oryzabase Gene Symbol Synonym(s)=OsSMT1-3;Oryzabase Gene Name Synonym(s)=sterol methyltransferase 1-3%2C sterol-C24-methyltransferase 1-3;Note=Similar to Cyclopropane-fatty-acyl-phospholipid synthase family protein%2C expressed.;Transcript_evidence=AK248796 (DDBJ);ORF_evidence=Q10BR3 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Methyltransferase type 11 (IPR013216);Oryzabase=22459;TENOR=Os11t0296900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	10919759	10919959	.	-	0	Parent=Os11t0296900-00
Chr11	irgsp1_rep	CDS	10919594	10919649	.	-	0	Parent=Os11t0296900-00
Chr11	irgsp1_rep	CDS	10919449	10919503	.	-	1	Parent=Os11t0296900-00
Chr11	irgsp1_rep	CDS	10919261	10919308	.	-	0	Parent=Os11t0296900-00
Chr11	irgsp1_rep	CDS	10919100	10919183	.	-	0	Parent=Os11t0296900-00
Chr11	irgsp1_rep	CDS	10918859	10918987	.	-	0	Parent=Os11t0296900-00
Chr11	irgsp1_rep	three_prime_UTR	10918787	10918858	.	-	.	Parent=Os11t0296900-00
Chr11	irgsp1_rep	three_prime_UTR	10918543	10918637	.	-	.	Parent=Os11t0296900-00
Chr11	irgsp1_rep	mRNA	10925275	10926515	.	+	.	ID=Os11t0297000-01;Name=Os11t0297000-01;Locus_id=Os11g0297000;Note=Conserved hypothetical protein.;Transcript_evidence=AK061209 (DDBJ%2C Best hit);ORF_evidence=B9GAE2 (UniProt);NIAS_FLcDNA=006-210-C05;TENOR=Os11t0297000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	10925275	10925985	.	+	.	Parent=Os11t0297000-01
Chr11	irgsp1_rep	five_prime_UTR	10926105	10926156	.	+	.	Parent=Os11t0297000-01
Chr11	irgsp1_rep	CDS	10926157	10926417	.	+	0	Parent=Os11t0297000-01
Chr11	irgsp1_rep	three_prime_UTR	10926418	10926515	.	+	.	Parent=Os11t0297000-01
Chr11	irgsp1_rep	mRNA	10935559	10939478	.	+	.	ID=Os11t0297300-01;Name=Os11t0297300-01;Locus_id=Os11g0297300;Note=Similar to Beta-D-xylosidase.;Transcript_evidence=AK070171 (DDBJ%2C Best hit);ORF_evidence=Q53MP2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 3%2C N-terminal (IPR001764),Glycoside hydrolase%2C family 3%2C C-terminal (IPR002772),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J023041O20;Expression=AK070171;TENOR=Os11t0297300-01;KEGG=Os11t0297300-01
Chr11	irgsp1_rep	five_prime_UTR	10935559	10935603	.	+	.	Parent=Os11t0297300-01
Chr11	irgsp1_rep	CDS	10935604	10936029	.	+	0	Parent=Os11t0297300-01
Chr11	irgsp1_rep	CDS	10936947	10937228	.	+	0	Parent=Os11t0297300-01
Chr11	irgsp1_rep	CDS	10937369	10937538	.	+	0	Parent=Os11t0297300-01
Chr11	irgsp1_rep	CDS	10937647	10937744	.	+	1	Parent=Os11t0297300-01
Chr11	irgsp1_rep	CDS	10937986	10939349	.	+	2	Parent=Os11t0297300-01
Chr11	irgsp1_rep	three_prime_UTR	10939350	10939478	.	+	.	Parent=Os11t0297300-01
Chr11	irgsp1_rep	mRNA	10935633	10939283	.	-	.	ID=Os11t0297400-00;Name=Os11t0297400-00;Locus_id=Os11g0297400;Note=Hypothetical protein.;Transcript_evidence=tplb0024e11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0297400-00
Chr11	irgsp1_rep	five_prime_UTR	10937985	10939283	.	-	.	Parent=Os11t0297400-00
Chr11	irgsp1_rep	five_prime_UTR	10937669	10937743	.	-	.	Parent=Os11t0297400-00
Chr11	irgsp1_rep	five_prime_UTR	10937376	10937561	.	-	.	Parent=Os11t0297400-00
Chr11	irgsp1_rep	five_prime_UTR	10937171	10937239	.	-	.	Parent=Os11t0297400-00
Chr11	irgsp1_rep	CDS	10936977	10937170	.	-	0	Parent=Os11t0297400-00
Chr11	irgsp1_rep	CDS	10935633	10936066	.	-	1	Parent=Os11t0297400-00
Chr11	irgsp1_rep	mRNA	10972643	10973314	.	-	.	ID=Os11t0297650-00;Name=Os11t0297650-00;Locus_id=Os11g0297650;Note=Conserved hypothetical protein.;Transcript_evidence=EU947114 (DDBJ);ORF_evidence=NP_001146754.1 (RefSeq);TENOR=Os11t0297650-00
Chr11	irgsp1_rep	CDS	10972643	10973314	.	-	0	Parent=Os11t0297650-00
Chr11	irgsp1_rep	mRNA	10972674	10978662	.	+	.	ID=Os11t0297800-01;Name=Os11t0297800-01;Locus_id=Os11g0297800;Note=Similar to Beta-D-xylosidase.;Transcript_evidence=AK109882 (DDBJ%2C Best hit);ORF_evidence=Q53MP2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 3%2C N-terminal (IPR001764),Glycoside hydrolase%2C family 3%2C C-terminal (IPR002772),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=002-149-D05;Expression=AK109882;TENOR=Os11t0297800-01;KEGG=Os11t0297800-01
Chr11	irgsp1_rep	five_prime_UTR	10972674	10972727	.	+	.	Parent=Os11t0297800-01
Chr11	irgsp1_rep	CDS	10972728	10973165	.	+	0	Parent=Os11t0297800-01
Chr11	irgsp1_rep	CDS	10975630	10975911	.	+	0	Parent=Os11t0297800-01
Chr11	irgsp1_rep	CDS	10975998	10976167	.	+	0	Parent=Os11t0297800-01
Chr11	irgsp1_rep	CDS	10976284	10976381	.	+	1	Parent=Os11t0297800-01
Chr11	irgsp1_rep	CDS	10976991	10978351	.	+	2	Parent=Os11t0297800-01
Chr11	irgsp1_rep	three_prime_UTR	10978352	10978662	.	+	.	Parent=Os11t0297800-01
Chr11	irgsp1_rep	mRNA	10978610	10982185	.	-	.	ID=Os11t0297900-01;Name=Os11t0297900-01;Locus_id=Os11g0297900;Oryzabase Gene Symbol Synonym(s)=TXNL4B%2C Dim2%2C DLP;Oryzabase Gene Name Synonym(s)=thioredoxin-like protein 4B;Note=Similar to Txnl4b protein.;Transcript_evidence=AK067692 (DDBJ%2C Best hit);ORF_evidence=B6TUU2 (UniProt);GO=Biological Process: mitosis (GO:0007067),Cellular Component: spliceosomal complex (GO:0005681);InterPro=mRNA splicing factor%2C thioredoxin-like U5 snRNP (IPR004123),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=J013118F01;Oryzabase=16723;Expression=AK067692;TENOR=Os11t0297900-01;KEGG=Os11t0297900-01
Chr11	irgsp1_rep	five_prime_UTR	10982089	10982185	.	-	.	Parent=Os11t0297900-01
Chr11	irgsp1_rep	CDS	10981954	10982088	.	-	0	Parent=Os11t0297900-01
Chr11	irgsp1_rep	CDS	10981209	10981366	.	-	0	Parent=Os11t0297900-01
Chr11	irgsp1_rep	CDS	10980190	10980256	.	-	1	Parent=Os11t0297900-01
Chr11	irgsp1_rep	CDS	10979064	10979162	.	-	0	Parent=Os11t0297900-01
Chr11	irgsp1_rep	three_prime_UTR	10979013	10979063	.	-	.	Parent=Os11t0297900-01
Chr11	irgsp1_rep	three_prime_UTR	10978610	10978918	.	-	.	Parent=Os11t0297900-01
Chr11	irgsp1_rep	mRNA	10998985	11000677	.	+	.	ID=Os11t0298000-00;Name=Os11t0298000-00;Locus_id=Os11g0298000;Oryzabase Gene Symbol Synonym(s)=OsATL8;Oryzabase Gene Name Synonym(s)=amino acid transporter-like 8;Note=Similar to amino acid transporter.;Transcript_evidence=ab initio prediction;ORF_evidence=XP_002321090.1 (RefSeq);InterPro=Amino acid transporter%2C transmembrane (IPR013057);Oryzabase=18525;TENOR=Os11t0298000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	10998985	10999282	.	+	0	Parent=Os11t0298000-00
Chr11	irgsp1_rep	CDS	10999524	11000677	.	+	2	Parent=Os11t0298000-00
Chr11	irgsp1_rep	mRNA	11002814	11003973	.	+	.	ID=Os11t0298200-00;Name=Os11t0298200-00;Locus_id=Os11g0298200;Note=Hypothetical gene.;Transcript_evidence=CT835691 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os11t0298200-00;KEGG=Os11t0298200-00
Chr11	irgsp1_rep	five_prime_UTR	11002814	11002854	.	+	.	Parent=Os11t0298200-00
Chr11	irgsp1_rep	CDS	11002855	11003009	.	+	0	Parent=Os11t0298200-00
Chr11	irgsp1_rep	CDS	11003263	11003344	.	+	1	Parent=Os11t0298200-00
Chr11	irgsp1_rep	three_prime_UTR	11003345	11003733	.	+	.	Parent=Os11t0298200-00
Chr11	irgsp1_rep	three_prime_UTR	11003905	11003973	.	+	.	Parent=Os11t0298200-00
Chr11	irgsp1_rep	mRNA	11013025	11023269	.	+	.	ID=Os11t0298400-01;Name=Os11t0298400-01;Locus_id=Os11g0298400;Note=Protein of unknown function DUF663 domain containing protein.;Transcript_evidence=AK068577 (DDBJ%2C Best hit);ORF_evidence=Q9SHN6 (UniProt);GO=Biological Process: ribosome biogenesis (GO:0042254),Cellular Component: nucleus (GO:0005634);InterPro=Ribosome biogenesis protein BMS1/TSR1%2C C-terminal (IPR007034),AARP2CN (IPR012948);NIAS_FLcDNA=J013157I04;Expression=AK068577;TENOR=Os11t0298400-01;KEGG=Os11t0298400-01
Chr11	irgsp1_rep	five_prime_UTR	11013025	11013212	.	+	.	Parent=Os11t0298400-01
Chr11	irgsp1_rep	CDS	11013213	11013294	.	+	0	Parent=Os11t0298400-01
Chr11	irgsp1_rep	CDS	11013419	11013504	.	+	2	Parent=Os11t0298400-01
Chr11	irgsp1_rep	CDS	11014996	11015073	.	+	0	Parent=Os11t0298400-01
Chr11	irgsp1_rep	CDS	11015183	11015314	.	+	0	Parent=Os11t0298400-01
Chr11	irgsp1_rep	CDS	11015601	11015651	.	+	0	Parent=Os11t0298400-01
Chr11	irgsp1_rep	CDS	11015745	11015885	.	+	0	Parent=Os11t0298400-01
Chr11	irgsp1_rep	CDS	11015970	11016092	.	+	0	Parent=Os11t0298400-01
Chr11	irgsp1_rep	CDS	11016205	11016282	.	+	0	Parent=Os11t0298400-01
Chr11	irgsp1_rep	CDS	11016664	11016753	.	+	0	Parent=Os11t0298400-01
Chr11	irgsp1_rep	CDS	11016836	11016955	.	+	0	Parent=Os11t0298400-01
Chr11	irgsp1_rep	CDS	11017152	11017235	.	+	0	Parent=Os11t0298400-01
Chr11	irgsp1_rep	CDS	11017865	11017960	.	+	0	Parent=Os11t0298400-01
Chr11	irgsp1_rep	CDS	11018051	11018239	.	+	0	Parent=Os11t0298400-01
Chr11	irgsp1_rep	CDS	11018921	11018996	.	+	0	Parent=Os11t0298400-01
Chr11	irgsp1_rep	CDS	11019723	11019826	.	+	2	Parent=Os11t0298400-01
Chr11	irgsp1_rep	CDS	11019924	11020183	.	+	0	Parent=Os11t0298400-01
Chr11	irgsp1_rep	CDS	11021216	11021302	.	+	1	Parent=Os11t0298400-01
Chr11	irgsp1_rep	CDS	11021400	11021627	.	+	1	Parent=Os11t0298400-01
Chr11	irgsp1_rep	CDS	11022480	11022556	.	+	1	Parent=Os11t0298400-01
Chr11	irgsp1_rep	CDS	11022628	11022693	.	+	2	Parent=Os11t0298400-01
Chr11	irgsp1_rep	CDS	11022768	11022877	.	+	2	Parent=Os11t0298400-01
Chr11	irgsp1_rep	three_prime_UTR	11022878	11023269	.	+	.	Parent=Os11t0298400-01
Chr11	irgsp1_rep	mRNA	11024459	11024863	.	+	.	ID=Os11t0298500-00;Name=Os11t0298500-00;Locus_id=Os11g0298500;Note=Similar to 60S ribosomal protein L7-like protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001062390.1 (RefSeq);TENOR=Os11t0298500-00;KEGG=Os11t0298500-00
Chr11	irgsp1_rep	CDS	11024459	11024863	.	+	0	Parent=Os11t0298500-00
Chr11	irgsp1_rep	mRNA	11051009	11051897	.	+	.	ID=Os11t0298833-00;Name=Os11t0298833-00;Locus_id=Os11g0298833;Note=Hypothetical protein.;Transcript_evidence=EU969884 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0298833-00
Chr11	irgsp1_rep	five_prime_UTR	11051009	11051010	.	+	.	Parent=Os11t0298833-00
Chr11	irgsp1_rep	CDS	11051011	11051897	.	+	0	Parent=Os11t0298833-00
Chr11	irgsp1_rep	mRNA	11058795	11061528	.	-	.	ID=Os11t0298866-00;Name=Os11t0298866-00;Locus_id=Os11g0298866;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0014n19 (Wheat FLcDNA);ORF_evidence=NP_001057661.2 (RefSeq);TENOR=Os11t0298866-00
Chr11	irgsp1_rep	five_prime_UTR	11061183	11061528	.	-	.	Parent=Os11t0298866-00
Chr11	irgsp1_rep	CDS	11060823	11061182	.	-	0	Parent=Os11t0298866-00
Chr11	irgsp1_rep	three_prime_UTR	11058795	11060822	.	-	.	Parent=Os11t0298866-00
Chr11	irgsp1_rep	mRNA	11110526	11112183	.	-	.	ID=Os11t0299300-01;Name=Os11t0299300-01;Locus_id=Os11g0299300;Note=Lipase%2C class 3 family protein.;Transcript_evidence=AK119915 (DDBJ%2C Best hit);ORF_evidence=A2Q4Y5 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921);NIAS_FLcDNA=002-183-F07;Expression=AK119915;TENOR=Os11t0299300-01;KEGG=Os11t0299300-01
Chr11	irgsp1_rep	five_prime_UTR	11112112	11112183	.	-	.	Parent=Os11t0299300-01
Chr11	irgsp1_rep	CDS	11110729	11112111	.	-	0	Parent=Os11t0299300-01
Chr11	irgsp1_rep	three_prime_UTR	11110526	11110728	.	-	.	Parent=Os11t0299300-01
Chr11	irgsp1_rep	mRNA	11206464	11206714	.	+	.	ID=Os11t0300400-01;Name=Os11t0300400-01;Locus_id=Os11g0300400;Note=Similar to Catalytic/ hydrolase.;Transcript_evidence=AK060426 (DDBJ%2C Best hit);ORF_evidence=B6TLB5 (UniProt);NIAS_FLcDNA=001-010-H10;Expression=AK060426;TENOR=Os11t0300400-01;KEGG=Os11t0300400-01
Chr11	irgsp1_rep	five_prime_UTR	11206464	11206464	.	+	.	Parent=Os11t0300400-01
Chr11	irgsp1_rep	CDS	11206465	11206605	.	+	0	Parent=Os11t0300400-01
Chr11	irgsp1_rep	three_prime_UTR	11206606	11206714	.	+	.	Parent=Os11t0300400-01
Chr11	irgsp1_rep	mRNA	11207157	11207371	.	+	.	ID=Os11t0300501-01;Name=Os11t0300501-01;Locus_id=Os11g0300501;Note=Non-protein coding transcript.;Transcript_evidence=AK242366 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080033A13;TENOR=Os11t0300501-01
Chr11	irgsp1_rep	exon	11207157	11207371	.	+	.	Parent=Os11t0300501-01
Chr11	irgsp1_rep	mRNA	11212708	11214426	.	+	.	ID=Os11t0300600-01;Name=Os11t0300600-01;Locus_id=Os11g0300600;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=AK060497 (DDBJ%2C Best hit);ORF_evidence=Q2QVC3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=001-016-G05;Expression=AK060497;TENOR=Os11t0300600-01;KEGG=Os11t0300600-01
Chr11	irgsp1_rep	five_prime_UTR	11212708	11212749	.	+	.	Parent=Os11t0300600-01
Chr11	irgsp1_rep	CDS	11212750	11214423	.	+	0	Parent=Os11t0300600-01
Chr11	irgsp1_rep	three_prime_UTR	11214424	11214426	.	+	.	Parent=Os11t0300600-01
Chr11	irgsp1_rep	mRNA	11218701	11220583	.	-	.	ID=Os11t0300650-00;Name=Os11t0300650-00;Locus_id=Os11g0300650;Note=Similar to predicted protein.;Transcript_evidence=AK066894 (DDBJ%2C Secondary hit);ORF_evidence=NP_974313.1 (RefSeq);Expression=AK066894;TENOR=Os11t0300650-00;KEGG=Os11t0300650-00
Chr11	irgsp1_rep	CDS	11220281	11220583	.	-	0	Parent=Os11t0300650-00
Chr11	irgsp1_rep	three_prime_UTR	11219787	11220280	.	-	.	Parent=Os11t0300650-00
Chr11	irgsp1_rep	three_prime_UTR	11218701	11219595	.	-	.	Parent=Os11t0300650-00
Chr11	irgsp1_rep	mRNA	11223123	11224019	.	+	.	ID=Os11t0300700-01;Name=Os11t0300700-01;Locus_id=Os11g0300700;CGSNL Gene Symbol=RLCK325;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 325;Oryzabase Gene Symbol Synonym(s)=OsRLCK325;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 325;Note=Similar to Protein kinase domain.;Transcript_evidence=AK108339 (DDBJ%2C Best hit);ORF_evidence=Q53P28 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-142-A10;Oryzabase=18996;TENOR=Os11t0300700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	11223123	11223284	.	+	.	Parent=Os11t0300700-01
Chr11	irgsp1_rep	CDS	11223285	11223779	.	+	0	Parent=Os11t0300700-01
Chr11	irgsp1_rep	three_prime_UTR	11223780	11224019	.	+	.	Parent=Os11t0300700-01
Chr11	irgsp1_rep	mRNA	11229929	11230423	.	-	.	ID=Os11t0300800-00;Name=Os11t0300800-00;Locus_id=Os11g0300800;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001176488.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING-type%2C conserved site (IPR017907);TENOR=Os11t0300800-00;KEGG=Os11t0300800-00
Chr11	irgsp1_rep	CDS	11229929	11230423	.	-	0	Parent=Os11t0300800-00
Chr11	irgsp1_rep	mRNA	11342349	11348424	.	+	.	ID=Os11t0302500-01;Name=Os11t0302500-01;Locus_id=Os11g0302500;Note=Similar to cycloeucalenol cycloisomerase.;Transcript_evidence=AK120763 (DDBJ%2C Best hit);ORF_evidence=NP_001150005.1 (RefSeq);InterPro=Cycloeucalenol cycloisomerase (IPR020532);NIAS_FLcDNA=J023007G17;TENOR=Os11t0302500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	11342349	11342366	.	+	.	Parent=Os11t0302500-01
Chr11	irgsp1_rep	CDS	11342367	11342373	.	+	0	Parent=Os11t0302500-01
Chr11	irgsp1_rep	CDS	11342469	11342641	.	+	2	Parent=Os11t0302500-01
Chr11	irgsp1_rep	CDS	11342835	11342918	.	+	0	Parent=Os11t0302500-01
Chr11	irgsp1_rep	CDS	11344111	11344278	.	+	0	Parent=Os11t0302500-01
Chr11	irgsp1_rep	three_prime_UTR	11344279	11347475	.	+	.	Parent=Os11t0302500-01
Chr11	irgsp1_rep	three_prime_UTR	11347886	11348424	.	+	.	Parent=Os11t0302500-01
Chr11	irgsp1_rep	mRNA	11361745	11368591	.	-	.	ID=Os11t0302700-01;Name=Os11t0302700-01;Locus_id=Os11g0302700;Oryzabase Gene Symbol Synonym(s)=RecA;Note=RecA bacterial DNA recombination family protein.;Transcript_evidence=AK073931 (DDBJ%2C Best hit);ORF_evidence=NP_179539.2 (RefSeq);GO=Biological Process: DNA metabolic process (GO:0006259),Biological Process: DNA repair (GO:0006281),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: DNA binding (GO:0003677),Molecular Function: single-stranded DNA binding (GO:0003697),Molecular Function: ATP binding (GO:0005524),Molecular Function: DNA-dependent ATPase activity (GO:0008094),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),DNA recombination and repair protein RecA (IPR013765),DNA recombination/repair protein RecA%2C conserved site (IPR020584),DNA recombination/repair protein RecA%2C monomer-monomer interface (IPR020587),DNA recombination/repair protein RecA/RadB%2C ATP-binding domain (IPR020588),DNA recombination and repair protein RecA%2C C-terminal (IPR023400);NIAS_FLcDNA=J033071A21;Oryzabase=21307;Expression=AK073931;TENOR=Os11t0302700-01;KEGG=Os11t0302700-01
Chr11	irgsp1_rep	five_prime_UTR	11368436	11368591	.	-	.	Parent=Os11t0302700-01
Chr11	irgsp1_rep	CDS	11368349	11368435	.	-	0	Parent=Os11t0302700-01
Chr11	irgsp1_rep	CDS	11367583	11367640	.	-	0	Parent=Os11t0302700-01
Chr11	irgsp1_rep	CDS	11366803	11367020	.	-	2	Parent=Os11t0302700-01
Chr11	irgsp1_rep	CDS	11365877	11365964	.	-	0	Parent=Os11t0302700-01
Chr11	irgsp1_rep	CDS	11364970	11365142	.	-	2	Parent=Os11t0302700-01
Chr11	irgsp1_rep	CDS	11364187	11364333	.	-	0	Parent=Os11t0302700-01
Chr11	irgsp1_rep	CDS	11362675	11362809	.	-	0	Parent=Os11t0302700-01
Chr11	irgsp1_rep	CDS	11362116	11362502	.	-	0	Parent=Os11t0302700-01
Chr11	irgsp1_rep	three_prime_UTR	11361745	11362115	.	-	.	Parent=Os11t0302700-01
Chr11	irgsp1_rep	mRNA	11371068	11376379	.	-	.	ID=Os11t0302750-00;Name=Os11t0302750-00;Locus_id=Os11g0302750;Note=Hypothetical protein.;Transcript_evidence=tplb0040b08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0302750-00
Chr11	irgsp1_rep	five_prime_UTR	11375741	11376379	.	-	.	Parent=Os11t0302750-00
Chr11	irgsp1_rep	five_prime_UTR	11374692	11374896	.	-	.	Parent=Os11t0302750-00
Chr11	irgsp1_rep	five_prime_UTR	11373865	11374484	.	-	.	Parent=Os11t0302750-00
Chr11	irgsp1_rep	five_prime_UTR	11372936	11373405	.	-	.	Parent=Os11t0302750-00
Chr11	irgsp1_rep	CDS	11372920	11372935	.	-	0	Parent=Os11t0302750-00
Chr11	irgsp1_rep	CDS	11371068	11371544	.	-	2	Parent=Os11t0302750-00
Chr11	irgsp1_rep	mRNA	11373318	11376619	.	+	.	ID=Os11t0302800-01;Name=Os11t0302800-01;Locus_id=Os11g0302800;Note=Protein of unknown function DUF724 family protein.;Transcript_evidence=AK064557 (DDBJ%2C Best hit);ORF_evidence=B9GAF2 (UniProt);InterPro=Protein of unknown function DUF724 (IPR007930);NIAS_FLcDNA=002-112-C06;Expression=AK064557;TENOR=Os11t0302800-01;KEGG=Os11t0302800-01
Chr11	irgsp1_rep	five_prime_UTR	11373318	11373318	.	+	.	Parent=Os11t0302800-01
Chr11	irgsp1_rep	CDS	11373319	11373396	.	+	0	Parent=Os11t0302800-01
Chr11	irgsp1_rep	CDS	11373879	11374469	.	+	0	Parent=Os11t0302800-01
Chr11	irgsp1_rep	CDS	11374593	11374659	.	+	0	Parent=Os11t0302800-01
Chr11	irgsp1_rep	CDS	11374726	11374836	.	+	2	Parent=Os11t0302800-01
Chr11	irgsp1_rep	CDS	11374912	11376422	.	+	2	Parent=Os11t0302800-01
Chr11	irgsp1_rep	three_prime_UTR	11376423	11376619	.	+	.	Parent=Os11t0302800-01
Chr11	irgsp1_rep	mRNA	11386194	11391300	.	-	.	ID=Os11t0302900-01;Name=Os11t0302900-01;Locus_id=Os11g0302900;Note=Similar to OSIGBa0136O08-OSIGBa0153H12.6 protein.;Transcript_evidence=AK065382 (DDBJ%2C Best hit);ORF_evidence=Q01HB8 (UniProt);NIAS_FLcDNA=J013013B03;Expression=AK065382;TENOR=Os11t0302900-01;KEGG=Os11t0302900-01
Chr11	irgsp1_rep	five_prime_UTR	11390929	11391300	.	-	.	Parent=Os11t0302900-01
Chr11	irgsp1_rep	five_prime_UTR	11390783	11390845	.	-	.	Parent=Os11t0302900-01
Chr11	irgsp1_rep	five_prime_UTR	11390589	11390676	.	-	.	Parent=Os11t0302900-01
Chr11	irgsp1_rep	five_prime_UTR	11389933	11390113	.	-	.	Parent=Os11t0302900-01
Chr11	irgsp1_rep	five_prime_UTR	11388912	11388956	.	-	.	Parent=Os11t0302900-01
Chr11	irgsp1_rep	five_prime_UTR	11386932	11387228	.	-	.	Parent=Os11t0302900-01
Chr11	irgsp1_rep	CDS	11386677	11386931	.	-	0	Parent=Os11t0302900-01
Chr11	irgsp1_rep	three_prime_UTR	11386194	11386676	.	-	.	Parent=Os11t0302900-01
Chr11	irgsp1_rep	mRNA	11392086	11392598	.	+	.	ID=Os11t0303050-00;Name=Os11t0303050-00;Locus_id=Os11g0303050;Note=Similar to Argininosuccinate synthase.;Transcript_evidence=BT087810 (DDBJ);ORF_evidence=B4FZ29 (UniProt);GO=Biological Process: arginine biosynthetic process (GO:0006526),Molecular Function: argininosuccinate synthase activity (GO:0004055),Molecular Function: ATP binding (GO:0005524);InterPro=Argininosuccinate synthase (IPR001518),Argininosuccinate synthetase%2C catalytic/multimerisation domain body (IPR024074);TENOR=Os11t0303050-00;KEGG=Os11t0303050-00 (EC:6.3.4.5)
Chr11	irgsp1_rep	CDS	11392086	11392598	.	+	0	Parent=Os11t0303050-00
Chr11	irgsp1_rep	mRNA	11396678	11402422	.	+	.	ID=Os11t0303200-01;Name=Os11t0303200-01;Locus_id=Os11g0303200;Note=Hypothetical protein.;Transcript_evidence=AK072858 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023135L01;Expression=AK072858;TENOR=Os11t0303200-01;KEGG=Os11t0303200-01
Chr11	irgsp1_rep	five_prime_UTR	11396678	11397442	.	+	.	Parent=Os11t0303200-01
Chr11	irgsp1_rep	five_prime_UTR	11397510	11397648	.	+	.	Parent=Os11t0303200-01
Chr11	irgsp1_rep	five_prime_UTR	11397791	11398118	.	+	.	Parent=Os11t0303200-01
Chr11	irgsp1_rep	five_prime_UTR	11398551	11400038	.	+	.	Parent=Os11t0303200-01
Chr11	irgsp1_rep	CDS	11400039	11400230	.	+	0	Parent=Os11t0303200-01
Chr11	irgsp1_rep	CDS	11400671	11400806	.	+	0	Parent=Os11t0303200-01
Chr11	irgsp1_rep	CDS	11402162	11402229	.	+	2	Parent=Os11t0303200-01
Chr11	irgsp1_rep	three_prime_UTR	11402230	11402422	.	+	.	Parent=Os11t0303200-01
Chr11	irgsp1_rep	mRNA	11396900	11402436	.	+	.	ID=Os11t0303200-02;Name=Os11t0303200-02;Locus_id=Os11g0303200;Note=Hypothetical protein.;Transcript_evidence=AK109375 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=006-209-B10;Expression=AK109375;TENOR=Os11t0303200-02;KEGG=Os11t0303200-02
Chr11	irgsp1_rep	five_prime_UTR	11396900	11397648	.	+	.	Parent=Os11t0303200-02
Chr11	irgsp1_rep	five_prime_UTR	11398551	11398641	.	+	.	Parent=Os11t0303200-02
Chr11	irgsp1_rep	five_prime_UTR	11400037	11400038	.	+	.	Parent=Os11t0303200-02
Chr11	irgsp1_rep	CDS	11400039	11400230	.	+	0	Parent=Os11t0303200-02
Chr11	irgsp1_rep	CDS	11400671	11400806	.	+	0	Parent=Os11t0303200-02
Chr11	irgsp1_rep	CDS	11402162	11402229	.	+	2	Parent=Os11t0303200-02
Chr11	irgsp1_rep	three_prime_UTR	11402230	11402436	.	+	.	Parent=Os11t0303200-02
Chr11	irgsp1_rep	mRNA	11395747	11404432	.	-	.	ID=Os11t0303300-00;Name=Os11t0303300-00;Locus_id=Os11g0303300;Note=Similar to O-methyltransferase.;Transcript_evidence=EU967787 (DDBJ);ORF_evidence=Q53QK5 (UniProt);TENOR=Os11t0303300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	11403520	11404432	.	-	0	Parent=Os11t0303300-00
Chr11	irgsp1_rep	CDS	11396003	11396034	.	-	2	Parent=Os11t0303300-00
Chr11	irgsp1_rep	three_prime_UTR	11395747	11396002	.	-	.	Parent=Os11t0303300-00
Chr11	irgsp1_rep	mRNA	11407302	11408305	.	+	.	ID=Os11t0303400-01;Name=Os11t0303400-01;Locus_id=Os11g0303400;Note=Hypothetical conserved gene.;Transcript_evidence=AK060084 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=006-306-F01;Expression=AK060084;TENOR=Os11t0303400-01;KEGG=Os11t0303400-01
Chr11	irgsp1_rep	five_prime_UTR	11407302	11407676	.	+	.	Parent=Os11t0303400-01
Chr11	irgsp1_rep	CDS	11407677	11407925	.	+	0	Parent=Os11t0303400-01
Chr11	irgsp1_rep	three_prime_UTR	11407926	11408305	.	+	.	Parent=Os11t0303400-01
Chr11	irgsp1_rep	mRNA	11407343	11411295	.	+	.	ID=Os11t0303400-02;Name=Os11t0303400-02;Locus_id=Os11g0303400;Note=Similar to Small GTP-binding protein OsRac2.;Transcript_evidence=AK099876 (DDBJ%2C Best hit);ORF_evidence=Q68Y52 (UniProt);GO=Biological Process: small GTPase mediated signal transduction (GO:0007264),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806);NIAS_FLcDNA=J013111H14;Expression=AK099876;TENOR=Os11t0303400-02;KEGG=Os11t0303400-02
Chr11	irgsp1_rep	five_prime_UTR	11407343	11407676	.	+	.	Parent=Os11t0303400-02
Chr11	irgsp1_rep	CDS	11407677	11407720	.	+	0	Parent=Os11t0303400-02
Chr11	irgsp1_rep	CDS	11408529	11408584	.	+	1	Parent=Os11t0303400-02
Chr11	irgsp1_rep	CDS	11408701	11408810	.	+	2	Parent=Os11t0303400-02
Chr11	irgsp1_rep	CDS	11408890	11409027	.	+	0	Parent=Os11t0303400-02
Chr11	irgsp1_rep	three_prime_UTR	11409028	11409072	.	+	.	Parent=Os11t0303400-02
Chr11	irgsp1_rep	three_prime_UTR	11409175	11409254	.	+	.	Parent=Os11t0303400-02
Chr11	irgsp1_rep	three_prime_UTR	11410075	11410294	.	+	.	Parent=Os11t0303400-02
Chr11	irgsp1_rep	three_prime_UTR	11410378	11410430	.	+	.	Parent=Os11t0303400-02
Chr11	irgsp1_rep	three_prime_UTR	11410701	11410810	.	+	.	Parent=Os11t0303400-02
Chr11	irgsp1_rep	three_prime_UTR	11410919	11411295	.	+	.	Parent=Os11t0303400-02
Chr11	irgsp1_rep	mRNA	11411524	11414063	.	-	.	ID=Os11t0303500-01;Name=Os11t0303500-01;Locus_id=Os11g0303500;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK068734 (DDBJ%2C Best hit);ORF_evidence=Q53QK3 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013159G04;Expression=AK068734;TENOR=Os11t0303500-01;KEGG=Os11t0303500-01
Chr11	irgsp1_rep	five_prime_UTR	11414062	11414063	.	-	.	Parent=Os11t0303500-01
Chr11	irgsp1_rep	CDS	11411887	11414061	.	-	0	Parent=Os11t0303500-01
Chr11	irgsp1_rep	three_prime_UTR	11411845	11411886	.	-	.	Parent=Os11t0303500-01
Chr11	irgsp1_rep	three_prime_UTR	11411524	11411733	.	-	.	Parent=Os11t0303500-01
Chr11	irgsp1_rep	mRNA	11430729	11432962	.	-	.	ID=Os11t0303600-01;Name=Os11t0303600-01;Locus_id=Os11g0303600;Oryzabase Gene Symbol Synonym(s)=OMT;Oryzabase Gene Name Synonym(s)=O-methyltransferase;Note=Similar to Herbicide safener binding protein.;Transcript_evidence=AK061247 (DDBJ%2C Best hit);ORF_evidence=Q53QK5 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: O-methyltransferase activity (GO:0008171),Molecular Function: protein dimerization activity (GO:0046983);InterPro=O-methyltransferase%2C family 2 (IPR001077),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Plant methyltransferase dimerisation (IPR012967),O-methyltransferase%2C COMT%2C eukaryota (IPR016461);NIAS_FLcDNA=006-211-E05;Oryzabase=16788;Expression=AK061247;TENOR=Os11t0303600-01;KEGG=Os11t0303600-01
Chr11	irgsp1_rep	five_prime_UTR	11432917	11432962	.	-	.	Parent=Os11t0303600-01
Chr11	irgsp1_rep	CDS	11432089	11432916	.	-	0	Parent=Os11t0303600-01
Chr11	irgsp1_rep	CDS	11430810	11431106	.	-	0	Parent=Os11t0303600-01
Chr11	irgsp1_rep	three_prime_UTR	11430729	11430809	.	-	.	Parent=Os11t0303600-01
Chr11	irgsp1_rep	mRNA	11435969	11436649	.	-	.	ID=Os11t0303701-00;Name=Os11t0303701-00;Locus_id=Os11g0303701;Note=Non-protein coding transcript.;Transcript_evidence=CT835647 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os11t0303701-00
Chr11	irgsp1_rep	exon	11435969	11436649	.	-	.	Parent=Os11t0303701-00
Chr11	irgsp1_rep	mRNA	11436951	11446262	.	-	.	ID=Os11t0303800-01;Name=Os11t0303800-01;Locus_id=Os11g0303800;Note=Hypothetical protein.;Transcript_evidence=AK068654 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J013161A10;TENOR=Os11t0303800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	11445808	11446262	.	-	.	Parent=Os11t0303800-01
Chr11	irgsp1_rep	five_prime_UTR	11442363	11442653	.	-	.	Parent=Os11t0303800-01
Chr11	irgsp1_rep	five_prime_UTR	11441400	11442099	.	-	.	Parent=Os11t0303800-01
Chr11	irgsp1_rep	CDS	11441059	11441399	.	-	0	Parent=Os11t0303800-01
Chr11	irgsp1_rep	CDS	11439229	11440192	.	-	1	Parent=Os11t0303800-01
Chr11	irgsp1_rep	three_prime_UTR	11439228	11439228	.	-	.	Parent=Os11t0303800-01
Chr11	irgsp1_rep	three_prime_UTR	11437303	11437371	.	-	.	Parent=Os11t0303800-01
Chr11	irgsp1_rep	three_prime_UTR	11436951	11437140	.	-	.	Parent=Os11t0303800-01
Chr11	irgsp1_rep	mRNA	11454885	11456583	.	-	.	ID=Os11t0304050-00;Name=Os11t0304050-00;Locus_id=Os11g0304050;Note=Winged helix repressor DNA-binding domain containing protein.;Transcript_evidence=AK333214 (DDBJ);ORF_evidence=Q53QK5 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: O-methyltransferase activity (GO:0008171),Molecular Function: protein dimerization activity (GO:0046983);InterPro=O-methyltransferase%2C family 2 (IPR001077),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Plant methyltransferase dimerisation (IPR012967),O-methyltransferase%2C COMT%2C eukaryota (IPR016461);TENOR=Os11t0304050-00;KEGG=Os11t0304050-00
Chr11	irgsp1_rep	five_prime_UTR	11456565	11456583	.	-	.	Parent=Os11t0304050-00
Chr11	irgsp1_rep	CDS	11455731	11456564	.	-	0	Parent=Os11t0304050-00
Chr11	irgsp1_rep	CDS	11455101	11455397	.	-	0	Parent=Os11t0304050-00
Chr11	irgsp1_rep	three_prime_UTR	11454885	11455100	.	-	.	Parent=Os11t0304050-00
Chr11	irgsp1_rep	mRNA	11520821	11522168	.	-	.	ID=Os11t0305300-01;Name=Os11t0305300-01;Locus_id=Os11g0305300;Note=Hypothetical gene.;Transcript_evidence=AK073863 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033071F17;Expression=AK073863;TENOR=Os11t0305300-01;KEGG=Os11t0305300-01
Chr11	irgsp1_rep	five_prime_UTR	11521896	11522168	.	-	.	Parent=Os11t0305300-01
Chr11	irgsp1_rep	five_prime_UTR	11521754	11521808	.	-	.	Parent=Os11t0305300-01
Chr11	irgsp1_rep	five_prime_UTR	11521279	11521514	.	-	.	Parent=Os11t0305300-01
Chr11	irgsp1_rep	CDS	11521063	11521278	.	-	0	Parent=Os11t0305300-01
Chr11	irgsp1_rep	three_prime_UTR	11520821	11521062	.	-	.	Parent=Os11t0305300-01
Chr11	irgsp1_rep	mRNA	11538313	11540897	.	-	.	ID=Os11t0305400-00;Name=Os11t0305400-00;Locus_id=Os11g0305400;Note=Similar to O-methyltransferase family protein.;Transcript_evidence=CT836570 (DDBJ%2C Best hit);ORF_evidence=Q53QK5 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: O-methyltransferase activity (GO:0008171),Molecular Function: protein dimerization activity (GO:0046983);InterPro=O-methyltransferase%2C family 2 (IPR001077),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Plant methyltransferase dimerisation (IPR012967),O-methyltransferase%2C COMT%2C eukaryota (IPR016461);TENOR=Os11t0305400-00;KEGG=Os11t0305400-00
Chr11	irgsp1_rep	five_prime_UTR	11540860	11540897	.	-	.	Parent=Os11t0305400-00
Chr11	irgsp1_rep	CDS	11540050	11540859	.	-	0	Parent=Os11t0305400-00
Chr11	irgsp1_rep	CDS	11538453	11538749	.	-	0	Parent=Os11t0305400-00
Chr11	irgsp1_rep	three_prime_UTR	11538313	11538452	.	-	.	Parent=Os11t0305400-00
Chr11	irgsp1_rep	mRNA	11572614	11574414	.	+	.	ID=Os11t0306100-01;Name=Os11t0306100-01;Locus_id=Os11g0306100;Note=Conserved hypothetical protein.;Transcript_evidence=AK288665 (DDBJ%2C Best hit);ORF_evidence=Q5Z4A8 (UniProt);NIAS_FLcDNA=J090058G11;TENOR=Os11t0306100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	11572614	11573409	.	+	.	Parent=Os11t0306100-01
Chr11	irgsp1_rep	CDS	11573410	11573523	.	+	0	Parent=Os11t0306100-01
Chr11	irgsp1_rep	three_prime_UTR	11573524	11574414	.	+	.	Parent=Os11t0306100-01
Chr11	irgsp1_rep	mRNA	11583390	11586836	.	+	.	ID=Os11t0306300-01;Name=Os11t0306300-01;Locus_id=Os11g0306300;Note=Similar to Herbicide safener binding protein.;Transcript_evidence=AK109384 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: O-methyltransferase activity (GO:0008171),Molecular Function: protein dimerization activity (GO:0046983);InterPro=O-methyltransferase%2C family 2 (IPR001077),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Plant methyltransferase dimerisation (IPR012967),O-methyltransferase%2C COMT%2C eukaryota (IPR016461);NIAS_FLcDNA=006-211-A06;Expression=AK109384;TENOR=Os11t0306300-01;KEGG=Os11t0306300-01
Chr11	irgsp1_rep	five_prime_UTR	11583390	11583443	.	+	.	Parent=Os11t0306300-01
Chr11	irgsp1_rep	CDS	11583444	11584283	.	+	0	Parent=Os11t0306300-01
Chr11	irgsp1_rep	CDS	11586431	11586631	.	+	0	Parent=Os11t0306300-01
Chr11	irgsp1_rep	three_prime_UTR	11586632	11586836	.	+	.	Parent=Os11t0306300-01
Chr11	irgsp1_rep	mRNA	11591738	11596168	.	-	.	ID=Os11t0306400-01;Name=Os11t0306400-01;Locus_id=Os11g0306400;Note=Similar to Herbicide safener binding protein.;Transcript_evidence=AK059770 (DDBJ%2C Best hit),AK106179 (DDBJ%2C Best hit);ORF_evidence=Q53LW7 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: O-methyltransferase activity (GO:0008171),Molecular Function: protein dimerization activity (GO:0046983);InterPro=O-methyltransferase%2C family 2 (IPR001077),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Plant methyltransferase dimerisation (IPR012967),O-methyltransferase%2C COMT%2C eukaryota (IPR016461);NIAS_FLcDNA=006-203-H05,001-208-C11;Expression=AK059770;TENOR=Os11t0306400-01;KEGG=Os11t0306400-01
Chr11	irgsp1_rep	five_prime_UTR	11596114	11596168	.	-	.	Parent=Os11t0306400-01
Chr11	irgsp1_rep	CDS	11595307	11596113	.	-	0	Parent=Os11t0306400-01
Chr11	irgsp1_rep	CDS	11591840	11592139	.	-	0	Parent=Os11t0306400-01
Chr11	irgsp1_rep	three_prime_UTR	11591738	11591839	.	-	.	Parent=Os11t0306400-01
Chr11	irgsp1_rep	mRNA	11650220	11651887	.	-	.	ID=Os11t0307300-01;Name=Os11t0307300-01;Locus_id=Os11g0307300;Note=Herbicide safener binding protein.;Transcript_evidence=AK240736 (DDBJ%2C Best hit);ORF_evidence=Q53LW7 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: O-methyltransferase activity (GO:0008171),Molecular Function: protein dimerization activity (GO:0046983);InterPro=O-methyltransferase%2C family 2 (IPR001077),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Plant methyltransferase dimerisation (IPR012967),O-methyltransferase%2C COMT%2C eukaryota (IPR016461);NIAS_FLcDNA=J043034A04;TENOR=Os11t0307300-01;KEGG=Os11t0307300-01
Chr11	irgsp1_rep	five_prime_UTR	11651810	11651887	.	-	.	Parent=Os11t0307300-01
Chr11	irgsp1_rep	CDS	11651003	11651809	.	-	0	Parent=Os11t0307300-01
Chr11	irgsp1_rep	CDS	11650526	11650825	.	-	0	Parent=Os11t0307300-01
Chr11	irgsp1_rep	three_prime_UTR	11650220	11650525	.	-	.	Parent=Os11t0307300-01
Chr11	irgsp1_rep	mRNA	11654672	11655319	.	-	.	ID=Os11t0307400-00;Name=Os11t0307400-00;Locus_id=Os11g0307400;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);TENOR=Os11t0307400-00
Chr11	irgsp1_rep	five_prime_UTR	11655316	11655319	.	-	.	Parent=Os11t0307400-00
Chr11	irgsp1_rep	CDS	11654977	11655315	.	-	0	Parent=Os11t0307400-00
Chr11	irgsp1_rep	three_prime_UTR	11654672	11654976	.	-	.	Parent=Os11t0307400-00
Chr11	irgsp1_rep	mRNA	11661330	11662253	.	+	.	ID=Os11t0307500-01;Name=Os11t0307500-01;Locus_id=Os11g0307500;Note=Conserved hypothetical protein.;Transcript_evidence=AK069871 (DDBJ%2C Best hit);ORF_evidence=Q53LW1 (UniProt);NIAS_FLcDNA=J023039P22;Expression=AK069871;TENOR=Os11t0307500-01;KEGG=Os11t0307500-01
Chr11	irgsp1_rep	five_prime_UTR	11661330	11661493	.	+	.	Parent=Os11t0307500-01
Chr11	irgsp1_rep	CDS	11661494	11661765	.	+	0	Parent=Os11t0307500-01
Chr11	irgsp1_rep	CDS	11661855	11662224	.	+	1	Parent=Os11t0307500-01
Chr11	irgsp1_rep	three_prime_UTR	11662225	11662253	.	+	.	Parent=Os11t0307500-01
Chr11	irgsp1_rep	mRNA	11666345	11667519	.	+	.	ID=Os11t0307550-00;Name=Os11t0307550-00;Locus_id=Os11g0307550;Note=Conserved hypothetical protein.;Transcript_evidence=CT833654 (DDBJ%2C Best hit);ORF_evidence=NP_001054866.1 (RefSeq);TENOR=Os11t0307550-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	11666345	11666346	.	+	.	Parent=Os11t0307550-00
Chr11	irgsp1_rep	CDS	11666347	11666673	.	+	0	Parent=Os11t0307550-00
Chr11	irgsp1_rep	three_prime_UTR	11666674	11666860	.	+	.	Parent=Os11t0307550-00
Chr11	irgsp1_rep	three_prime_UTR	11666930	11667519	.	+	.	Parent=Os11t0307550-00
Chr11	irgsp1_rep	mRNA	11704780	11705792	.	-	.	ID=Os11t0307600-01;Name=Os11t0307600-01;Locus_id=Os11g0307600;Note=Conserved hypothetical protein.;Transcript_evidence=AK121926 (DDBJ%2C Best hit);ORF_evidence=Q53LV4 (UniProt);NIAS_FLcDNA=J033106G15;TENOR=Os11t0307600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	11705347	11705792	.	-	.	Parent=Os11t0307600-01
Chr11	irgsp1_rep	CDS	11704963	11705346	.	-	0	Parent=Os11t0307600-01
Chr11	irgsp1_rep	three_prime_UTR	11704780	11704962	.	-	.	Parent=Os11t0307600-01
Chr11	irgsp1_rep	mRNA	11685421	11705780	.	-	.	ID=Os11t0307600-02;Name=Os11t0307600-02;Locus_id=Os11g0307600;Note=Similar to Hydroxyproline-rich glycoprotein DZ-HRGP precursor.;Transcript_evidence=AK070683 (DDBJ%2C Best hit);ORF_evidence=Q01KX6 (UniProt);NIAS_FLcDNA=J023062D08;Expression=AK070683;TENOR=Os11t0307600-02;KEGG=Os11t0307600-02
Chr11	irgsp1_rep	five_prime_UTR	11704873	11705780	.	-	.	Parent=Os11t0307600-02
Chr11	irgsp1_rep	five_prime_UTR	11688446	11688583	.	-	.	Parent=Os11t0307600-02
Chr11	irgsp1_rep	CDS	11688293	11688445	.	-	0	Parent=Os11t0307600-02
Chr11	irgsp1_rep	CDS	11688188	11688223	.	-	0	Parent=Os11t0307600-02
Chr11	irgsp1_rep	CDS	11687194	11687255	.	-	0	Parent=Os11t0307600-02
Chr11	irgsp1_rep	CDS	11686491	11687127	.	-	1	Parent=Os11t0307600-02
Chr11	irgsp1_rep	CDS	11686251	11686415	.	-	0	Parent=Os11t0307600-02
Chr11	irgsp1_rep	CDS	11686001	11686171	.	-	0	Parent=Os11t0307600-02
Chr11	irgsp1_rep	CDS	11685545	11685886	.	-	0	Parent=Os11t0307600-02
Chr11	irgsp1_rep	three_prime_UTR	11685421	11685544	.	-	.	Parent=Os11t0307600-02
Chr11	irgsp1_rep	mRNA	11712800	11716306	.	-	.	ID=Os11t0307950-01;Name=Os11t0307950-01;Locus_id=Os11g0307950;Note=Conserved hypothetical protein.;Transcript_evidence=AK241234 (DDBJ%2C Best hit);ORF_evidence=XP_002458835.1 (RefSeq);NIAS_FLcDNA=J065128D07;TENOR=Os11t0307950-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	11715721	11716306	.	-	.	Parent=Os11t0307950-01
Chr11	irgsp1_rep	five_prime_UTR	11715359	11715508	.	-	.	Parent=Os11t0307950-01
Chr11	irgsp1_rep	five_prime_UTR	11714978	11715082	.	-	.	Parent=Os11t0307950-01
Chr11	irgsp1_rep	CDS	11714796	11714977	.	-	0	Parent=Os11t0307950-01
Chr11	irgsp1_rep	CDS	11713983	11714065	.	-	1	Parent=Os11t0307950-01
Chr11	irgsp1_rep	CDS	11713826	11713827	.	-	2	Parent=Os11t0307950-01
Chr11	irgsp1_rep	three_prime_UTR	11713677	11713825	.	-	.	Parent=Os11t0307950-01
Chr11	irgsp1_rep	three_prime_UTR	11712800	11713270	.	-	.	Parent=Os11t0307950-01
Chr11	irgsp1_rep	mRNA	11736082	11739401	.	-	.	ID=Os11t0308100-01;Name=Os11t0308100-01;Locus_id=Os11g0308100;Note=Similar to Transposase of Tn10 [Oryza sativa (japonica cultivar-group)].;Transcript_evidence=AK099990 (DDBJ%2C Best hit);ORF_evidence=Q7GC12 (UniProt);NIAS_FLcDNA=J013131A13;Expression=AK099990;TENOR=Os11t0308100-01;KEGG=Os11t0308100-01
Chr11	irgsp1_rep	five_prime_UTR	11737569	11739401	.	-	.	Parent=Os11t0308100-01
Chr11	irgsp1_rep	five_prime_UTR	11737027	11737378	.	-	.	Parent=Os11t0308100-01
Chr11	irgsp1_rep	CDS	11736916	11737026	.	-	0	Parent=Os11t0308100-01
Chr11	irgsp1_rep	CDS	11736731	11736823	.	-	0	Parent=Os11t0308100-01
Chr11	irgsp1_rep	CDS	11736560	11736608	.	-	0	Parent=Os11t0308100-01
Chr11	irgsp1_rep	CDS	11736453	11736463	.	-	2	Parent=Os11t0308100-01
Chr11	irgsp1_rep	three_prime_UTR	11736082	11736452	.	-	.	Parent=Os11t0308100-01
Chr11	irgsp1_rep	mRNA	11749412	11751804	.	+	.	ID=Os11t0308266-00;Name=Os11t0308266-00;Locus_id=Os11g0308266;Note=Non-protein coding transcript.;Transcript_evidence=CT835635 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os11t0308266-00
Chr11	irgsp1_rep	exon	11749412	11749520	.	+	.	Parent=Os11t0308266-00
Chr11	irgsp1_rep	exon	11751403	11751804	.	+	.	Parent=Os11t0308266-00
Chr11	irgsp1_rep	mRNA	11755320	11757928	.	-	.	ID=Os11t0308432-01;Name=Os11t0308432-01;Locus_id=Os11g0308432;Note=Hypothetical conserved gene.;Transcript_evidence=AK107577 (DDBJ%2C Best hit);ORF_evidence=B9GAG4 (UniProt);NIAS_FLcDNA=002-130-D11;Expression=AK107577;TENOR=Os11t0308432-01;KEGG=Os11t0308432-01
Chr11	irgsp1_rep	five_prime_UTR	11756954	11757928	.	-	.	Parent=Os11t0308432-01
Chr11	irgsp1_rep	CDS	11756777	11756953	.	-	0	Parent=Os11t0308432-01
Chr11	irgsp1_rep	three_prime_UTR	11755320	11756776	.	-	.	Parent=Os11t0308432-01
Chr11	irgsp1_rep	mRNA	11760348	11760956	.	-	.	ID=Os11t0308600-01;Name=Os11t0308600-01;Locus_id=Os11g0308600;Note=Conserved hypothetical protein.;Transcript_evidence=AK105177 (DDBJ%2C Best hit);ORF_evidence=B8BK75 (UniProt);NIAS_FLcDNA=001-105-A12;TENOR=Os11t0308600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	11760956	11760956	.	-	.	Parent=Os11t0308600-01
Chr11	irgsp1_rep	CDS	11760625	11760955	.	-	0	Parent=Os11t0308600-01
Chr11	irgsp1_rep	CDS	11760516	11760541	.	-	2	Parent=Os11t0308600-01
Chr11	irgsp1_rep	three_prime_UTR	11760348	11760515	.	-	.	Parent=Os11t0308600-01
Chr11	irgsp1_rep	mRNA	11775138	11780422	.	+	.	ID=Os11t0308800-01;Name=Os11t0308800-01;Locus_id=Os11g0308800;Note=Hypothetical conserved gene.;Transcript_evidence=AK065367 (DDBJ%2C Best hit);ORF_evidence=B9GAG5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J013021L08;TENOR=Os11t0308800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	11775138	11775420	.	+	.	Parent=Os11t0308800-01
Chr11	irgsp1_rep	five_prime_UTR	11776221	11776419	.	+	.	Parent=Os11t0308800-01
Chr11	irgsp1_rep	CDS	11776420	11777758	.	+	0	Parent=Os11t0308800-01
Chr11	irgsp1_rep	CDS	11778045	11778178	.	+	2	Parent=Os11t0308800-01
Chr11	irgsp1_rep	CDS	11778387	11778650	.	+	0	Parent=Os11t0308800-01
Chr11	irgsp1_rep	three_prime_UTR	11778651	11778935	.	+	.	Parent=Os11t0308800-01
Chr11	irgsp1_rep	three_prime_UTR	11779053	11779099	.	+	.	Parent=Os11t0308800-01
Chr11	irgsp1_rep	three_prime_UTR	11779204	11780422	.	+	.	Parent=Os11t0308800-01
Chr11	irgsp1_rep	mRNA	11775181	11778664	.	+	.	ID=Os11t0308800-02;Name=Os11t0308800-02;Locus_id=Os11g0308800;Note=Hypothetical conserved gene.;Transcript_evidence=AK068828 (DDBJ%2C Best hit);ORF_evidence=B9GAG5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J013158B15;Expression=AK068828;TENOR=Os11t0308800-02;KEGG=Os11t0308800-02
Chr11	irgsp1_rep	five_prime_UTR	11775181	11775420	.	+	.	Parent=Os11t0308800-02
Chr11	irgsp1_rep	five_prime_UTR	11776221	11776419	.	+	.	Parent=Os11t0308800-02
Chr11	irgsp1_rep	CDS	11776420	11777758	.	+	0	Parent=Os11t0308800-02
Chr11	irgsp1_rep	CDS	11778045	11778178	.	+	2	Parent=Os11t0308800-02
Chr11	irgsp1_rep	CDS	11778387	11778650	.	+	0	Parent=Os11t0308800-02
Chr11	irgsp1_rep	three_prime_UTR	11778651	11778664	.	+	.	Parent=Os11t0308800-02
Chr11	irgsp1_rep	mRNA	11786205	11801782	.	-	.	ID=Os11t0309000-01;Name=Os11t0309000-01;Locus_id=Os11g0309000;Note=Synaptojanin%2C N-terminal domain containing protein.;Transcript_evidence=AK100215 (DDBJ%2C Best hit);ORF_evidence=D3Y5N9 (UniProt);GO=Molecular Function: phosphoric ester hydrolase activity (GO:0042578);InterPro=Synaptojanin%2C N-terminal (IPR002013);NIAS_FLcDNA=J023044O16;Expression=AK100215;TENOR=Os11t0309000-01;KEGG=Os11t0309000-01
Chr11	irgsp1_rep	five_prime_UTR	11801636	11801782	.	-	.	Parent=Os11t0309000-01
Chr11	irgsp1_rep	five_prime_UTR	11800715	11800725	.	-	.	Parent=Os11t0309000-01
Chr11	irgsp1_rep	CDS	11800349	11800714	.	-	0	Parent=Os11t0309000-01
Chr11	irgsp1_rep	CDS	11800177	11800268	.	-	0	Parent=Os11t0309000-01
Chr11	irgsp1_rep	CDS	11799964	11800021	.	-	1	Parent=Os11t0309000-01
Chr11	irgsp1_rep	CDS	11796568	11796624	.	-	0	Parent=Os11t0309000-01
Chr11	irgsp1_rep	CDS	11796452	11796485	.	-	0	Parent=Os11t0309000-01
Chr11	irgsp1_rep	CDS	11796237	11796317	.	-	2	Parent=Os11t0309000-01
Chr11	irgsp1_rep	CDS	11795967	11796073	.	-	2	Parent=Os11t0309000-01
Chr11	irgsp1_rep	CDS	11795501	11795587	.	-	0	Parent=Os11t0309000-01
Chr11	irgsp1_rep	CDS	11795233	11795310	.	-	0	Parent=Os11t0309000-01
Chr11	irgsp1_rep	CDS	11792735	11792805	.	-	0	Parent=Os11t0309000-01
Chr11	irgsp1_rep	CDS	11792561	11792659	.	-	1	Parent=Os11t0309000-01
Chr11	irgsp1_rep	CDS	11791554	11791653	.	-	1	Parent=Os11t0309000-01
Chr11	irgsp1_rep	CDS	11788988	11789096	.	-	0	Parent=Os11t0309000-01
Chr11	irgsp1_rep	CDS	11788812	11788884	.	-	2	Parent=Os11t0309000-01
Chr11	irgsp1_rep	CDS	11788088	11788181	.	-	1	Parent=Os11t0309000-01
Chr11	irgsp1_rep	CDS	11787824	11787913	.	-	0	Parent=Os11t0309000-01
Chr11	irgsp1_rep	CDS	11786773	11786839	.	-	0	Parent=Os11t0309000-01
Chr11	irgsp1_rep	CDS	11786427	11786557	.	-	2	Parent=Os11t0309000-01
Chr11	irgsp1_rep	three_prime_UTR	11786205	11786426	.	-	.	Parent=Os11t0309000-01
Chr11	irgsp1_rep	mRNA	11791554	11801722	.	-	.	ID=Os11t0309000-02;Name=Os11t0309000-02;Locus_id=Os11g0309000;Note=Similar to predicted protein.;Transcript_evidence=AK111831 (DDBJ%2C Best hit);ORF_evidence=D3Y5N9 (UniProt);GO=Molecular Function: phosphoric ester hydrolase activity (GO:0042578);InterPro=Synaptojanin%2C N-terminal (IPR002013);NIAS_FLcDNA=J023128H24;Expression=AK111831;TENOR=Os11t0309000-02;KEGG=Os11t0309000-02
Chr11	irgsp1_rep	five_prime_UTR	11801636	11801722	.	-	.	Parent=Os11t0309000-02
Chr11	irgsp1_rep	five_prime_UTR	11800715	11800725	.	-	.	Parent=Os11t0309000-02
Chr11	irgsp1_rep	CDS	11800349	11800714	.	-	0	Parent=Os11t0309000-02
Chr11	irgsp1_rep	CDS	11800177	11800268	.	-	0	Parent=Os11t0309000-02
Chr11	irgsp1_rep	CDS	11799964	11800021	.	-	1	Parent=Os11t0309000-02
Chr11	irgsp1_rep	CDS	11796568	11796624	.	-	0	Parent=Os11t0309000-02
Chr11	irgsp1_rep	CDS	11796452	11796485	.	-	0	Parent=Os11t0309000-02
Chr11	irgsp1_rep	CDS	11796237	11796317	.	-	2	Parent=Os11t0309000-02
Chr11	irgsp1_rep	CDS	11795967	11796073	.	-	2	Parent=Os11t0309000-02
Chr11	irgsp1_rep	CDS	11795501	11795587	.	-	0	Parent=Os11t0309000-02
Chr11	irgsp1_rep	CDS	11795233	11795310	.	-	0	Parent=Os11t0309000-02
Chr11	irgsp1_rep	CDS	11792735	11792805	.	-	0	Parent=Os11t0309000-02
Chr11	irgsp1_rep	CDS	11792561	11792659	.	-	1	Parent=Os11t0309000-02
Chr11	irgsp1_rep	CDS	11791554	11791653	.	-	1	Parent=Os11t0309000-02
Chr11	irgsp1_rep	mRNA	11786136	11801722	.	-	.	ID=Os11t0309000-03;Name=Os11t0309000-03;Locus_id=Os11g0309000;Note=Synaptojanin%2C N-terminal domain containing protein.;Transcript_evidence=AK100761 (DDBJ%2C Best hit);ORF_evidence=D3Y5N9 (UniProt);GO=Molecular Function: phosphoric ester hydrolase activity (GO:0042578);InterPro=Synaptojanin%2C N-terminal (IPR002013);NIAS_FLcDNA=J023119H14;Expression=AK100761;TENOR=Os11t0309000-03;KEGG=Os11t0309000-03
Chr11	irgsp1_rep	five_prime_UTR	11801636	11801722	.	-	.	Parent=Os11t0309000-03
Chr11	irgsp1_rep	five_prime_UTR	11800715	11800725	.	-	.	Parent=Os11t0309000-03
Chr11	irgsp1_rep	CDS	11800349	11800714	.	-	0	Parent=Os11t0309000-03
Chr11	irgsp1_rep	CDS	11800177	11800268	.	-	0	Parent=Os11t0309000-03
Chr11	irgsp1_rep	CDS	11799964	11800021	.	-	1	Parent=Os11t0309000-03
Chr11	irgsp1_rep	CDS	11796568	11796624	.	-	0	Parent=Os11t0309000-03
Chr11	irgsp1_rep	CDS	11796452	11796485	.	-	0	Parent=Os11t0309000-03
Chr11	irgsp1_rep	CDS	11796237	11796317	.	-	2	Parent=Os11t0309000-03
Chr11	irgsp1_rep	CDS	11795967	11796073	.	-	2	Parent=Os11t0309000-03
Chr11	irgsp1_rep	CDS	11795501	11795587	.	-	0	Parent=Os11t0309000-03
Chr11	irgsp1_rep	CDS	11795233	11795310	.	-	0	Parent=Os11t0309000-03
Chr11	irgsp1_rep	CDS	11792735	11792805	.	-	0	Parent=Os11t0309000-03
Chr11	irgsp1_rep	CDS	11792561	11792659	.	-	1	Parent=Os11t0309000-03
Chr11	irgsp1_rep	CDS	11791554	11791653	.	-	1	Parent=Os11t0309000-03
Chr11	irgsp1_rep	CDS	11788988	11789096	.	-	0	Parent=Os11t0309000-03
Chr11	irgsp1_rep	CDS	11788812	11788884	.	-	2	Parent=Os11t0309000-03
Chr11	irgsp1_rep	CDS	11788088	11788181	.	-	1	Parent=Os11t0309000-03
Chr11	irgsp1_rep	CDS	11787824	11787913	.	-	0	Parent=Os11t0309000-03
Chr11	irgsp1_rep	CDS	11786773	11786839	.	-	0	Parent=Os11t0309000-03
Chr11	irgsp1_rep	CDS	11786427	11786557	.	-	2	Parent=Os11t0309000-03
Chr11	irgsp1_rep	three_prime_UTR	11786136	11786426	.	-	.	Parent=Os11t0309000-03
Chr11	irgsp1_rep	mRNA	11871386	11879058	.	-	.	ID=Os11t0310100-01;Name=Os11t0310100-01;Locus_id=Os11g0310100;Note=Hypothetical conserved gene.;Transcript_evidence=AK289052 (DDBJ%2C Best hit);ORF_evidence=B8BK79 (UniProt);NIAS_FLcDNA=J090092O22;TENOR=Os11t0310100-01;KEGG=Os11t0310100-01
Chr11	irgsp1_rep	five_prime_UTR	11878595	11879058	.	-	.	Parent=Os11t0310100-01
Chr11	irgsp1_rep	five_prime_UTR	11876141	11876431	.	-	.	Parent=Os11t0310100-01
Chr11	irgsp1_rep	five_prime_UTR	11873502	11876045	.	-	.	Parent=Os11t0310100-01
Chr11	irgsp1_rep	CDS	11873295	11873501	.	-	0	Parent=Os11t0310100-01
Chr11	irgsp1_rep	three_prime_UTR	11871386	11873294	.	-	.	Parent=Os11t0310100-01
Chr11	irgsp1_rep	mRNA	11908797	11924762	.	+	.	ID=Os11t0310800-01;Name=Os11t0310800-01;Locus_id=Os11g0310800;Note=DEAD-like helicase%2C N-terminal domain containing protein.;Transcript_evidence=AK101122 (DDBJ%2C Best hit);ORF_evidence=B8BK78 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C ATP-dependent%2C DEAH-box type%2C conserved site (IPR002464),Helicase-associated domain (IPR007502),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),Domain of unknown function DUF1605 (IPR011709),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J033025J07;Expression=AK101122;TENOR=Os11t0310800-01;KEGG=Os11t0310800-01
Chr11	irgsp1_rep	five_prime_UTR	11908797	11908849	.	+	.	Parent=Os11t0310800-01
Chr11	irgsp1_rep	CDS	11908850	11909082	.	+	0	Parent=Os11t0310800-01
Chr11	irgsp1_rep	CDS	11909654	11909746	.	+	1	Parent=Os11t0310800-01
Chr11	irgsp1_rep	CDS	11909826	11909930	.	+	1	Parent=Os11t0310800-01
Chr11	irgsp1_rep	CDS	11910757	11910974	.	+	1	Parent=Os11t0310800-01
Chr11	irgsp1_rep	CDS	11912561	11912613	.	+	2	Parent=Os11t0310800-01
Chr11	irgsp1_rep	CDS	11913192	11913308	.	+	0	Parent=Os11t0310800-01
Chr11	irgsp1_rep	CDS	11914598	11914689	.	+	0	Parent=Os11t0310800-01
Chr11	irgsp1_rep	CDS	11915453	11915539	.	+	1	Parent=Os11t0310800-01
Chr11	irgsp1_rep	CDS	11915670	11915884	.	+	1	Parent=Os11t0310800-01
Chr11	irgsp1_rep	CDS	11917239	11917331	.	+	2	Parent=Os11t0310800-01
Chr11	irgsp1_rep	CDS	11921295	11921418	.	+	2	Parent=Os11t0310800-01
Chr11	irgsp1_rep	CDS	11921497	11921638	.	+	1	Parent=Os11t0310800-01
Chr11	irgsp1_rep	CDS	11922995	11923064	.	+	0	Parent=Os11t0310800-01
Chr11	irgsp1_rep	CDS	11923482	11923639	.	+	2	Parent=Os11t0310800-01
Chr11	irgsp1_rep	CDS	11924082	11924257	.	+	0	Parent=Os11t0310800-01
Chr11	irgsp1_rep	CDS	11924342	11924492	.	+	1	Parent=Os11t0310800-01
Chr11	irgsp1_rep	three_prime_UTR	11924493	11924762	.	+	.	Parent=Os11t0310800-01
Chr11	irgsp1_rep	mRNA	11956178	11958426	.	-	.	ID=Os11t0311100-01;Name=Os11t0311100-01;Locus_id=Os11g0311100;Note=Similar to Pantothenate kinase family protein.;Transcript_evidence=AK106180 (DDBJ%2C Best hit);ORF_evidence=B6SPI3 (UniProt);NIAS_FLcDNA=001-208-D02;Expression=AK106180;TENOR=Os11t0311100-01;KEGG=Os11t0311100-01
Chr11	irgsp1_rep	CDS	11957632	11958426	.	-	0	Parent=Os11t0311100-01
Chr11	irgsp1_rep	three_prime_UTR	11957595	11957631	.	-	.	Parent=Os11t0311100-01
Chr11	irgsp1_rep	three_prime_UTR	11957395	11957499	.	-	.	Parent=Os11t0311100-01
Chr11	irgsp1_rep	three_prime_UTR	11956488	11956549	.	-	.	Parent=Os11t0311100-01
Chr11	irgsp1_rep	three_prime_UTR	11956178	11956393	.	-	.	Parent=Os11t0311100-01
Chr11	irgsp1_rep	mRNA	11980471	11988051	.	+	.	ID=Os11t0311300-01;Name=Os11t0311300-01;Locus_id=Os11g0311300;Note=Exoribonuclease domain containing protein.;Transcript_evidence=AK105427 (DDBJ%2C Best hit);ORF_evidence=B4FDY3 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Molecular Function: RNA binding (GO:0003723);InterPro=Exoribonuclease%2C phosphorolytic domain 1 (IPR001247),Exoribonuclease%2C phosphorolytic domain 2 (IPR015847),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=001-124-D01;Expression=AK105427;TENOR=Os11t0311300-01;KEGG=Os11t0311300-01
Chr11	irgsp1_rep	five_prime_UTR	11980471	11980472	.	+	.	Parent=Os11t0311300-01
Chr11	irgsp1_rep	CDS	11980473	11980522	.	+	0	Parent=Os11t0311300-01
Chr11	irgsp1_rep	CDS	11980606	11980756	.	+	1	Parent=Os11t0311300-01
Chr11	irgsp1_rep	CDS	11980872	11980941	.	+	0	Parent=Os11t0311300-01
Chr11	irgsp1_rep	CDS	11981044	11981149	.	+	2	Parent=Os11t0311300-01
Chr11	irgsp1_rep	CDS	11981695	11981761	.	+	1	Parent=Os11t0311300-01
Chr11	irgsp1_rep	CDS	11985213	11985288	.	+	0	Parent=Os11t0311300-01
Chr11	irgsp1_rep	CDS	11986787	11987076	.	+	2	Parent=Os11t0311300-01
Chr11	irgsp1_rep	CDS	11987629	11987721	.	+	0	Parent=Os11t0311300-01
Chr11	irgsp1_rep	three_prime_UTR	11987722	11988051	.	+	.	Parent=Os11t0311300-01
Chr11	irgsp1_rep	mRNA	11980473	11987864	.	+	.	ID=Os11t0311300-02;Name=Os11t0311300-02;Locus_id=Os11g0311300;Note=Similar to Exosome complex exonuclease RRP43.;Transcript_evidence=AK102900 (DDBJ%2C Best hit);ORF_evidence=B4FDY3 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Molecular Function: RNA binding (GO:0003723);InterPro=Exoribonuclease%2C phosphorolytic domain 1 (IPR001247),Exoribonuclease%2C phosphorolytic domain 2 (IPR015847),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=J033113A20;Expression=AK102900;TENOR=Os11t0311300-02;KEGG=Os11t0311300-02
Chr11	irgsp1_rep	five_prime_UTR	11980473	11980537	.	+	.	Parent=Os11t0311300-02
Chr11	irgsp1_rep	CDS	11980538	11980756	.	+	0	Parent=Os11t0311300-02
Chr11	irgsp1_rep	CDS	11980872	11980941	.	+	0	Parent=Os11t0311300-02
Chr11	irgsp1_rep	CDS	11981044	11981149	.	+	2	Parent=Os11t0311300-02
Chr11	irgsp1_rep	CDS	11981695	11981761	.	+	1	Parent=Os11t0311300-02
Chr11	irgsp1_rep	CDS	11985213	11985288	.	+	0	Parent=Os11t0311300-02
Chr11	irgsp1_rep	CDS	11986787	11987076	.	+	2	Parent=Os11t0311300-02
Chr11	irgsp1_rep	CDS	11987629	11987721	.	+	0	Parent=Os11t0311300-02
Chr11	irgsp1_rep	three_prime_UTR	11987722	11987864	.	+	.	Parent=Os11t0311300-02
Chr11	irgsp1_rep	mRNA	11980506	11988019	.	+	.	ID=Os11t0311300-03;Name=Os11t0311300-03;Locus_id=Os11g0311300;Note=Similar to Exosome complex exonuclease RRP43.;Transcript_evidence=AK073252 (DDBJ%2C Best hit);ORF_evidence=B4FDY3 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Molecular Function: RNA binding (GO:0003723);InterPro=Exoribonuclease%2C phosphorolytic domain 1 (IPR001247),Exoribonuclease%2C phosphorolytic domain 2 (IPR015847),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=J033023A06;Expression=AK073252;TENOR=Os11t0311300-03;KEGG=Os11t0311300-03
Chr11	irgsp1_rep	five_prime_UTR	11980506	11980537	.	+	.	Parent=Os11t0311300-03
Chr11	irgsp1_rep	CDS	11980538	11980756	.	+	0	Parent=Os11t0311300-03
Chr11	irgsp1_rep	CDS	11980872	11980941	.	+	0	Parent=Os11t0311300-03
Chr11	irgsp1_rep	CDS	11981044	11981149	.	+	2	Parent=Os11t0311300-03
Chr11	irgsp1_rep	CDS	11981695	11981761	.	+	1	Parent=Os11t0311300-03
Chr11	irgsp1_rep	CDS	11985213	11985288	.	+	0	Parent=Os11t0311300-03
Chr11	irgsp1_rep	CDS	11986787	11987076	.	+	2	Parent=Os11t0311300-03
Chr11	irgsp1_rep	CDS	11987629	11987721	.	+	0	Parent=Os11t0311300-03
Chr11	irgsp1_rep	three_prime_UTR	11987722	11988019	.	+	.	Parent=Os11t0311300-03
Chr11	irgsp1_rep	mRNA	11980511	11982212	.	+	.	ID=Os11t0311300-04;Name=Os11t0311300-04;Locus_id=Os11g0311300;Note=Similar to Exosome complex exonuclease RRP43.;Transcript_evidence=AK122064 (DDBJ%2C Best hit);ORF_evidence=NP_001148711.1 (RefSeq);InterPro=Exoribonuclease%2C phosphorolytic domain 1 (IPR001247),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=J033115L08;Expression=AK122064;TENOR=Os11t0311300-04;KEGG=Os11t0311300-04
Chr11	irgsp1_rep	five_prime_UTR	11980511	11980537	.	+	.	Parent=Os11t0311300-04
Chr11	irgsp1_rep	CDS	11980538	11980756	.	+	0	Parent=Os11t0311300-04
Chr11	irgsp1_rep	CDS	11980872	11980941	.	+	0	Parent=Os11t0311300-04
Chr11	irgsp1_rep	CDS	11981044	11981252	.	+	2	Parent=Os11t0311300-04
Chr11	irgsp1_rep	three_prime_UTR	11981253	11982212	.	+	.	Parent=Os11t0311300-04
Chr11	irgsp1_rep	mRNA	11982954	11983330	.	+	.	ID=Os11t0311350-00;Name=Os11t0311350-00;Locus_id=Os11g0311350;Note=Non-protein coding transcript.;Transcript_evidence=CU861804 (DDBJ%2C Secondary hit);ORF_evidence=NONE;TENOR=Os11t0311350-00
Chr11	irgsp1_rep	exon	11982954	11983330	.	+	.	Parent=Os11t0311350-00
Chr11	irgsp1_rep	mRNA	11990129	11990596	.	-	.	ID=Os11t0311550-00;Name=Os11t0311550-00;Locus_id=Os11g0311550;Note=Similar to dolichol phosphate-mannose biosynthesis regulatory protein-related.;Transcript_evidence=FP100446 (DDBJ);ORF_evidence=NP_177574.1 (RefSeq);GO=Biological Process: macromolecule biosynthetic process (GO:0009059),Cellular Component: integral to endoplasmic reticulum membrane (GO:0030176);InterPro=Dolichol phosphate-mannose biosynthesis regulatory (IPR009914);TENOR=Os11t0311550-00
Chr11	irgsp1_rep	five_prime_UTR	11990542	11990596	.	-	.	Parent=Os11t0311550-00
Chr11	irgsp1_rep	CDS	11990452	11990541	.	-	0	Parent=Os11t0311550-00
Chr11	irgsp1_rep	CDS	11990203	11990361	.	-	0	Parent=Os11t0311550-00
Chr11	irgsp1_rep	three_prime_UTR	11990129	11990202	.	-	.	Parent=Os11t0311550-00
Chr11	irgsp1_rep	mRNA	12011789	12013457	.	+	.	ID=Os11t0312000-01;Name=Os11t0312000-01;Locus_id=Os11g0312000;Note=Non-protein coding transcript.;Transcript_evidence=AK064538 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-111-H12;TENOR=Os11t0312000-01
Chr11	irgsp1_rep	exon	12011789	12013457	.	+	.	Parent=Os11t0312000-01
Chr11	irgsp1_rep	mRNA	12034676	12039464	.	+	.	ID=Os11t0312220-00;Name=Os11t0312220-00;Locus_id=Os11g0312220;Note=Adenylate kinase B (EC 2.7.4.3) (ATP-AMP transphosphorylase).;Transcript_evidence=CU405827 (DDBJ%2C Best hit);ORF_evidence=Q08480 (UniProt);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Biological Process: nucleotide phosphorylation (GO:0046939),Molecular Function: adenylate kinase activity (GO:0004017),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphotransferase activity%2C phosphate group as acceptor (GO:0016776),Molecular Function: nucleotide kinase activity (GO:0019201),Molecular Function: nucleobase-containing compound kinase activity (GO:0019205);InterPro=Adenylate kinase (IPR000850),Adenylate kinase%2C subfamily (IPR006259),Adenylate kinase%2C active site lid domain (IPR007862);TENOR=Os11t0312220-00;KEGG=Os11t0312220-00 (EC:2.7.4.3)
Chr11	irgsp1_rep	five_prime_UTR	12034676	12034734	.	+	.	Parent=Os11t0312220-00
Chr11	irgsp1_rep	CDS	12034735	12034843	.	+	0	Parent=Os11t0312220-00
Chr11	irgsp1_rep	CDS	12037411	12037556	.	+	2	Parent=Os11t0312220-00
Chr11	irgsp1_rep	CDS	12037697	12037816	.	+	0	Parent=Os11t0312220-00
Chr11	irgsp1_rep	CDS	12037936	12038103	.	+	0	Parent=Os11t0312220-00
Chr11	irgsp1_rep	CDS	12038739	12038828	.	+	0	Parent=Os11t0312220-00
Chr11	irgsp1_rep	CDS	12039125	12039223	.	+	0	Parent=Os11t0312220-00
Chr11	irgsp1_rep	three_prime_UTR	12039224	12039464	.	+	.	Parent=Os11t0312220-00
Chr11	irgsp1_rep	mRNA	12078190	12078652	.	+	.	ID=Os11t0312340-00;Name=Os11t0312340-00;Locus_id=Os11g0312340;Note=Similar to predicted protein.;Transcript_evidence=EU947243 (DDBJ);ORF_evidence=NP_172840.1 (RefSeq);InterPro=Chromatin associated protein KTI12 (IPR013641);TENOR=Os11t0312340-00;KEGG=Os11t0312340-00
Chr11	irgsp1_rep	five_prime_UTR	12078190	12078206	.	+	.	Parent=Os11t0312340-00
Chr11	irgsp1_rep	CDS	12078207	12078360	.	+	0	Parent=Os11t0312340-00
Chr11	irgsp1_rep	CDS	12078486	12078652	.	+	2	Parent=Os11t0312340-00
Chr11	irgsp1_rep	mRNA	12136987	12141801	.	+	.	ID=Os11t0312400-01;Name=Os11t0312400-01;Locus_id=Os11g0312400;CGSNL Gene Symbol=ADKB;CGSNL Gene Name=ADENYLATE KINASE B;Oryzabase Gene Symbol Synonym(s)=Adk-b;Oryzabase Gene Name Synonym(s)=adenylate kinase b;Note=Adenylate kinase B (EC 2.7.4.3) (ATP-AMP transphosphorylase).;Transcript_evidence=AK073605 (DDBJ%2C Best hit);ORF_evidence=Q08480 (UniProt);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Biological Process: nucleotide phosphorylation (GO:0046939),Molecular Function: adenylate kinase activity (GO:0004017),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphotransferase activity%2C phosphate group as acceptor (GO:0016776),Molecular Function: nucleotide kinase activity (GO:0019201),Molecular Function: nucleobase-containing compound kinase activity (GO:0019205);InterPro=Adenylate kinase (IPR000850),Adenylate kinase%2C subfamily (IPR006259),Adenylate kinase%2C active site lid domain (IPR007862);NIAS_FLcDNA=J033048N16;Oryzabase=13713;Expression=AK073605;TENOR=Os11t0312400-01;KEGG=Os11t0312400-01 (EC:2.7.4.3)
Chr11	irgsp1_rep	five_prime_UTR	12136987	12137045	.	+	.	Parent=Os11t0312400-01
Chr11	irgsp1_rep	CDS	12137046	12137154	.	+	0	Parent=Os11t0312400-01
Chr11	irgsp1_rep	CDS	12139722	12139867	.	+	2	Parent=Os11t0312400-01
Chr11	irgsp1_rep	CDS	12140008	12140127	.	+	0	Parent=Os11t0312400-01
Chr11	irgsp1_rep	CDS	12140247	12140414	.	+	0	Parent=Os11t0312400-01
Chr11	irgsp1_rep	CDS	12141050	12141139	.	+	0	Parent=Os11t0312400-01
Chr11	irgsp1_rep	CDS	12141436	12141534	.	+	0	Parent=Os11t0312400-01
Chr11	irgsp1_rep	three_prime_UTR	12141535	12141801	.	+	.	Parent=Os11t0312400-01
Chr11	irgsp1_rep	mRNA	12226617	12227793	.	-	.	ID=Os11t0323860-01;Name=Os11t0323860-01;Locus_id=Os11g0323860;Note=Hypothetical conserved gene.;Transcript_evidence=AK243521 (DDBJ%2C Best hit);ORF_evidence=B9GCL3 (UniProt);NIAS_FLcDNA=J100075J18;TENOR=Os11t0323860-01;KEGG=Os11t0323860-01
Chr11	irgsp1_rep	five_prime_UTR	12227693	12227793	.	-	.	Parent=Os11t0323860-01
Chr11	irgsp1_rep	CDS	12227611	12227692	.	-	0	Parent=Os11t0323860-01
Chr11	irgsp1_rep	CDS	12227226	12227263	.	-	2	Parent=Os11t0323860-01
Chr11	irgsp1_rep	CDS	12226887	12227033	.	-	0	Parent=Os11t0323860-01
Chr11	irgsp1_rep	three_prime_UTR	12226617	12226886	.	-	.	Parent=Os11t0323860-01
Chr11	irgsp1_rep	mRNA	12293860	12295589	.	+	.	ID=Os11t0329399-01;Name=Os11t0329399-01;Locus_id=Os11g0329399;Note=Hypothetical gene.;Transcript_evidence=AK069198 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023008N24;TENOR=Os11t0329399-01;KEGG=Os11t0329399-01
Chr11	irgsp1_rep	five_prime_UTR	12293860	12294766	.	+	.	Parent=Os11t0329399-01
Chr11	irgsp1_rep	CDS	12294767	12295084	.	+	0	Parent=Os11t0329399-01
Chr11	irgsp1_rep	three_prime_UTR	12295085	12295589	.	+	.	Parent=Os11t0329399-01
Chr11	irgsp1_rep	mRNA	12354795	12355939	.	+	.	ID=Os11t0334938-00;Name=Os11t0334938-00;Locus_id=Os11g0334938;Note=Similar to Class III peroxidase 111.;Transcript_evidence=BT085722 (DDBJ);ORF_evidence=B6TU39 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidase%2C active site (IPR019794);TENOR=Os11t0334938-00;KEGG=Os11t0334938-00 (EC:1.11.1.7)
Chr11	irgsp1_rep	CDS	12354795	12355345	.	+	0	Parent=Os11t0334938-00
Chr11	irgsp1_rep	CDS	12355753	12355939	.	+	1	Parent=Os11t0334938-00
Chr11	irgsp1_rep	mRNA	12362861	12363665	.	+	.	ID=Os11t0340477-01;Name=Os11t0340477-01;Locus_id=Os11g0340477;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK108997 (DDBJ%2C Best hit);ORF_evidence=A2XIC5 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=002-153-G07;Expression=AK108997;TENOR=Os11t0340477-01;KEGG=Os11t0340477-01
Chr11	irgsp1_rep	five_prime_UTR	12362861	12362977	.	+	.	Parent=Os11t0340477-01
Chr11	irgsp1_rep	CDS	12362978	12363580	.	+	0	Parent=Os11t0340477-01
Chr11	irgsp1_rep	three_prime_UTR	12363581	12363665	.	+	.	Parent=Os11t0340477-01
Chr11	irgsp1_rep	mRNA	12370861	12372045	.	+	.	ID=Os11t0346016-00;Name=Os11t0346016-00;Locus_id=Os11g0346016;Note=Similar to calmodulin binding protein.;Transcript_evidence=AK372659 (DDBJ);ORF_evidence=NP_001151502.1 (RefSeq);InterPro=Calmodulin binding protein-like (IPR012416);TENOR=Os11t0346016-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	12370861	12370909	.	+	.	Parent=Os11t0346016-00
Chr11	irgsp1_rep	CDS	12370910	12371131	.	+	0	Parent=Os11t0346016-00
Chr11	irgsp1_rep	CDS	12371246	12371833	.	+	0	Parent=Os11t0346016-00
Chr11	irgsp1_rep	three_prime_UTR	12371834	12372045	.	+	.	Parent=Os11t0346016-00
Chr11	irgsp1_rep	mRNA	12375780	12377341	.	-	.	ID=Os11t0351555-01;Name=Os11t0351555-01;Locus_id=Os11g0351555;Note=Similar to A.thaliana gene induced upon wounding stress.;Transcript_evidence=AK106105 (DDBJ%2C Best hit);ORF_evidence=D6NIX1 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-207-C11;TENOR=Os11t0351555-01
Chr11	irgsp1_rep	five_prime_UTR	12377152	12377341	.	-	.	Parent=Os11t0351555-01
Chr11	irgsp1_rep	CDS	12375961	12377151	.	-	0	Parent=Os11t0351555-01
Chr11	irgsp1_rep	three_prime_UTR	12375780	12375960	.	-	.	Parent=Os11t0351555-01
Chr11	irgsp1_rep	mRNA	12375894	12377302	.	-	.	ID=Os11t0351555-02;Name=Os11t0351555-02;Locus_id=Os11g0351555;Note=Similar to A.thaliana gene induced upon wounding stress.;Transcript_evidence=AK065159 (DDBJ%2C Best hit);ORF_evidence=D6NIX1 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013002B24;Expression=AK065159;TENOR=Os11t0351555-02;KEGG=Os11t0351555-02
Chr11	irgsp1_rep	five_prime_UTR	12377152	12377302	.	-	.	Parent=Os11t0351555-02
Chr11	irgsp1_rep	CDS	12375961	12377151	.	-	0	Parent=Os11t0351555-02
Chr11	irgsp1_rep	three_prime_UTR	12375894	12375960	.	-	.	Parent=Os11t0351555-02
Chr11	irgsp1_rep	mRNA	12375780	12377240	.	-	.	ID=Os11t0351555-03;Name=Os11t0351555-03;Locus_id=Os11g0351555;Note=Similar to A.thaliana gene induced upon wounding stress.;Transcript_evidence=AK060848 (DDBJ%2C Best hit);ORF_evidence=D6NIX1 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-034-E05;TENOR=Os11t0351555-03
Chr11	irgsp1_rep	five_prime_UTR	12377152	12377240	.	-	.	Parent=Os11t0351555-03
Chr11	irgsp1_rep	CDS	12375961	12377151	.	-	0	Parent=Os11t0351555-03
Chr11	irgsp1_rep	three_prime_UTR	12375780	12375960	.	-	.	Parent=Os11t0351555-03
Chr11	irgsp1_rep	mRNA	12389202	12391157	.	+	.	ID=Os11t0357094-00;Name=Os11t0357094-00;Locus_id=Os11g0357094;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2XIB7 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os11t0357094-00
Chr11	irgsp1_rep	CDS	12389202	12391157	.	+	0	Parent=Os11t0357094-00
Chr11	irgsp1_rep	mRNA	12403900	12404346	.	-	.	ID=Os11t0362633-00;Name=Os11t0362633-00;Locus_id=Os11g0362633;Note=Hypothetical conserved gene.;Transcript_evidence=FP093303 (DDBJ);ORF_evidence=A9NKD9 (UniProt);InterPro=Protein of unknown function DUF3743 (IPR022214);TENOR=Os11t0362633-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	12404296	12404346	.	-	.	Parent=Os11t0362633-00
Chr11	irgsp1_rep	CDS	12403900	12404295	.	-	0	Parent=Os11t0362633-00
Chr11	irgsp1_rep	mRNA	12406159	12408062	.	-	.	ID=Os11t0368172-01;Name=Os11t0368172-01;Locus_id=Os11g0368172;Note=Peptidase S8 and S53%2C subtilisin%2C kexin%2C sedolisin domain containing protein.;Transcript_evidence=AK107787 (DDBJ%2C Best hit);ORF_evidence=A9NKD9 (UniProt);InterPro=Protein of unknown function DUF3743 (IPR022214);NIAS_FLcDNA=002-133-D01;Expression=AK107787;TENOR=Os11t0368172-01;KEGG=Os11t0368172-01
Chr11	irgsp1_rep	five_prime_UTR	12407957	12408062	.	-	.	Parent=Os11t0368172-01
Chr11	irgsp1_rep	CDS	12407657	12407956	.	-	0	Parent=Os11t0368172-01
Chr11	irgsp1_rep	three_prime_UTR	12407656	12407656	.	-	.	Parent=Os11t0368172-01
Chr11	irgsp1_rep	three_prime_UTR	12406159	12406422	.	-	.	Parent=Os11t0368172-01
Chr11	irgsp1_rep	mRNA	12409936	12410557	.	-	.	ID=Os11t0373711-01;Name=Os11t0373711-01;Locus_id=Os11g0373711;Note=Hypothetical gene.;Transcript_evidence=AK101901 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033071C01;Expression=AK101901;TENOR=Os11t0373711-01;KEGG=Os11t0373711-01
Chr11	irgsp1_rep	CDS	12410147	12410557	.	-	0	Parent=Os11t0373711-01
Chr11	irgsp1_rep	three_prime_UTR	12409936	12410146	.	-	.	Parent=Os11t0373711-01
Chr11	irgsp1_rep	mRNA	12412769	12414896	.	+	.	ID=Os11t0379251-00;Name=Os11t0379251-00;Locus_id=Os11g0379251;Note=Similar to calmodulin binding protein.;Transcript_evidence=AK372659 (DDBJ);ORF_evidence=NP_001151502.1 (RefSeq);InterPro=Calmodulin binding protein-like (IPR012416);TENOR=Os11t0379251-00
Chr11	irgsp1_rep	CDS	12412769	12413088	.	+	0	Parent=Os11t0379251-00
Chr11	irgsp1_rep	CDS	12413198	12413273	.	+	1	Parent=Os11t0379251-00
Chr11	irgsp1_rep	CDS	12413773	12413825	.	+	0	Parent=Os11t0379251-00
Chr11	irgsp1_rep	CDS	12413947	12414437	.	+	1	Parent=Os11t0379251-00
Chr11	irgsp1_rep	CDS	12414715	12414896	.	+	2	Parent=Os11t0379251-00
Chr11	irgsp1_rep	mRNA	12423935	12440714	.	+	.	ID=Os11t0384789-01;Name=Os11t0384789-01;Locus_id=Os11g0384789;Note=Similar to Hydrolase.;Transcript_evidence=AK104400 (DDBJ%2C Best hit),AK073355 (DDBJ%2C Best hit),AK104138 (DDBJ%2C Best hit);ORF_evidence=NP_001151350.1 (RefSeq);NIAS_FLcDNA=006-202-E03,J033030A08,006-204-H10;Expression=AK104400;TENOR=Os11t0384789-01;KEGG=Os11t0384789-01
Chr11	irgsp1_rep	five_prime_UTR	12423935	12424082	.	+	.	Parent=Os11t0384789-01
Chr11	irgsp1_rep	CDS	12424083	12424453	.	+	0	Parent=Os11t0384789-01
Chr11	irgsp1_rep	CDS	12440059	12440503	.	+	1	Parent=Os11t0384789-01
Chr11	irgsp1_rep	three_prime_UTR	12440504	12440714	.	+	.	Parent=Os11t0384789-01
Chr11	irgsp1_rep	mRNA	12424035	12440709	.	+	.	ID=Os11t0384789-02;Name=Os11t0384789-02;Locus_id=Os11g0384789;Note=Similar to Hydrolase.;Transcript_evidence=AK061303 (DDBJ%2C Best hit);ORF_evidence=NP_001151350.1 (RefSeq);NIAS_FLcDNA=006-301-G08;Expression=AK061303;TENOR=Os11t0384789-02;KEGG=Os11t0384789-02
Chr11	irgsp1_rep	five_prime_UTR	12424035	12424082	.	+	.	Parent=Os11t0384789-02
Chr11	irgsp1_rep	CDS	12424083	12424453	.	+	0	Parent=Os11t0384789-02
Chr11	irgsp1_rep	CDS	12440059	12440503	.	+	1	Parent=Os11t0384789-02
Chr11	irgsp1_rep	three_prime_UTR	12440504	12440709	.	+	.	Parent=Os11t0384789-02
Chr11	irgsp1_rep	mRNA	12442099	12442602	.	-	.	ID=Os11t0390328-01;Name=Os11t0390328-01;Locus_id=Os11g0390328;Note=Conserved hypothetical protein.;Transcript_evidence=AK111380 (DDBJ%2C Best hit);ORF_evidence=Q6ERG3 (UniProt);NIAS_FLcDNA=002-182-B06;TENOR=Os11t0390328-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	12442488	12442602	.	-	.	Parent=Os11t0390328-01
Chr11	irgsp1_rep	CDS	12442296	12442487	.	-	0	Parent=Os11t0390328-01
Chr11	irgsp1_rep	three_prime_UTR	12442099	12442295	.	-	.	Parent=Os11t0390328-01
Chr11	irgsp1_rep	mRNA	12458114	12458249	.	-	.	ID=Os11t0393097-00;Name=Os11t0393097-00;Locus_id=Os11g0393097;Note=Similar to chlorophyll a-b binding protein M9%2C chloroplastic precursor.;Transcript_evidence=AJ234427 (DDBJ);ORF_evidence=NP_001105545.1 (RefSeq);TENOR=Os11t0393097-00
Chr11	irgsp1_rep	CDS	12458160	12458249	.	-	0	Parent=Os11t0393097-00
Chr11	irgsp1_rep	three_prime_UTR	12458114	12458159	.	-	.	Parent=Os11t0393097-00
Chr11	irgsp1_rep	mRNA	12474878	12476342	.	-	.	ID=Os11t0406945-00;Name=Os11t0406945-00;Locus_id=Os11g0406945;Note=Similar to Phenazine biosynthesis-like protein%2C expressed.;Transcript_evidence=AK333982 (DDBJ);ORF_evidence=Q10J41 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824);InterPro=Phenazine biosynthesis PhzC/PhzF protein (IPR003719);TENOR=Os11t0406945-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	12476007	12476342	.	-	0	Parent=Os11t0406945-00
Chr11	irgsp1_rep	CDS	12475562	12475723	.	-	0	Parent=Os11t0406945-00
Chr11	irgsp1_rep	CDS	12475126	12475209	.	-	0	Parent=Os11t0406945-00
Chr11	irgsp1_rep	CDS	12474903	12475010	.	-	0	Parent=Os11t0406945-00
Chr11	irgsp1_rep	three_prime_UTR	12474878	12474902	.	-	.	Parent=Os11t0406945-00
Chr11	irgsp1_rep	mRNA	12510081	12511257	.	-	.	ID=Os11t0412484-01;Name=Os11t0412484-01;Locus_id=Os11g0412484;Note=Hypothetical conserved gene.;Transcript_evidence=AK243521 (DDBJ%2C Best hit);ORF_evidence=B9GCL3 (UniProt);NIAS_FLcDNA=J100075J18;TENOR=Os11t0412484-01;KEGG=Os11t0412484-01
Chr11	irgsp1_rep	five_prime_UTR	12511157	12511257	.	-	.	Parent=Os11t0412484-01
Chr11	irgsp1_rep	CDS	12511075	12511156	.	-	0	Parent=Os11t0412484-01
Chr11	irgsp1_rep	CDS	12510690	12510727	.	-	2	Parent=Os11t0412484-01
Chr11	irgsp1_rep	CDS	12510351	12510497	.	-	0	Parent=Os11t0412484-01
Chr11	irgsp1_rep	three_prime_UTR	12510081	12510350	.	-	.	Parent=Os11t0412484-01
Chr11	irgsp1_rep	mRNA	12595106	12596860	.	-	.	ID=Os11t0413800-00;Name=Os11t0413800-00;Locus_id=Os11g0413800;Note=Non-protein coding transcript.;Transcript_evidence=CT837809 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os11t0413800-00
Chr11	irgsp1_rep	exon	12596741	12596860	.	-	.	Parent=Os11t0413800-00
Chr11	irgsp1_rep	exon	12596167	12596256	.	-	.	Parent=Os11t0413800-00
Chr11	irgsp1_rep	exon	12595434	12595466	.	-	.	Parent=Os11t0413800-00
Chr11	irgsp1_rep	exon	12595106	12595327	.	-	.	Parent=Os11t0413800-00
Chr11	irgsp1_rep	mRNA	12633341	12640831	.	-	.	ID=Os11t0414000-01;Name=Os11t0414000-01;Locus_id=Os11g0414000;Note=eIF4-gamma/eIF5/eIF2-epsilon domain containing protein.;Transcript_evidence=AK071277 (DDBJ%2C Best hit);ORF_evidence=B3TM17 (UniProt);GO=Biological Process: RNA metabolic process (GO:0016070),Molecular Function: binding (GO:0005488);InterPro=eIF4-gamma/eIF5/eIF2-epsilon (IPR003307),MIF4-like%2C type 1/2/3 (IPR016021),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023082M08;Expression=AK071277;TENOR=Os11t0414000-01;KEGG=Os11t0414000-01
Chr11	irgsp1_rep	five_prime_UTR	12640695	12640831	.	-	.	Parent=Os11t0414000-01
Chr11	irgsp1_rep	CDS	12640690	12640694	.	-	0	Parent=Os11t0414000-01
Chr11	irgsp1_rep	CDS	12639373	12639396	.	-	1	Parent=Os11t0414000-01
Chr11	irgsp1_rep	CDS	12638359	12638464	.	-	1	Parent=Os11t0414000-01
Chr11	irgsp1_rep	CDS	12637752	12637820	.	-	0	Parent=Os11t0414000-01
Chr11	irgsp1_rep	CDS	12636648	12637144	.	-	0	Parent=Os11t0414000-01
Chr11	irgsp1_rep	CDS	12636303	12636564	.	-	1	Parent=Os11t0414000-01
Chr11	irgsp1_rep	CDS	12634009	12634217	.	-	0	Parent=Os11t0414000-01
Chr11	irgsp1_rep	CDS	12633573	12633639	.	-	1	Parent=Os11t0414000-01
Chr11	irgsp1_rep	three_prime_UTR	12633341	12633572	.	-	.	Parent=Os11t0414000-01
Chr11	irgsp1_rep	mRNA	12633390	12636456	.	-	.	ID=Os11t0414000-02;Name=Os11t0414000-02;Locus_id=Os11g0414000;Note=Similar to predicted protein.;Transcript_evidence=AK059141 (DDBJ%2C Best hit);ORF_evidence=B3TM17 (UniProt);GO=Biological Process: RNA metabolic process (GO:0016070),Molecular Function: binding (GO:0005488);InterPro=eIF4-gamma/eIF5/eIF2-epsilon (IPR003307),MIF4-like%2C type 1/2/3 (IPR016021),Armadillo-type fold (IPR016024);NIAS_FLcDNA=001-023-A05;Expression=AK059141;TENOR=Os11t0414000-02;KEGG=Os11t0414000-02
Chr11	irgsp1_rep	five_prime_UTR	12636456	12636456	.	-	.	Parent=Os11t0414000-02
Chr11	irgsp1_rep	CDS	12636303	12636455	.	-	0	Parent=Os11t0414000-02
Chr11	irgsp1_rep	CDS	12634009	12634217	.	-	0	Parent=Os11t0414000-02
Chr11	irgsp1_rep	CDS	12633573	12633639	.	-	1	Parent=Os11t0414000-02
Chr11	irgsp1_rep	three_prime_UTR	12633390	12633572	.	-	.	Parent=Os11t0414000-02
Chr11	irgsp1_rep	mRNA	12637750	12638465	.	+	.	ID=Os11t0414250-00;Name=Os11t0414250-00;Locus_id=Os11g0414250;Note=Non-protein coding transcript.;Transcript_evidence=BT084969 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0414250-00
Chr11	irgsp1_rep	exon	12637750	12637822	.	+	.	Parent=Os11t0414250-00
Chr11	irgsp1_rep	exon	12638362	12638465	.	+	.	Parent=Os11t0414250-00
Chr11	irgsp1_rep	mRNA	12730441	12732336	.	-	.	ID=Os11t0415450-00;Name=Os11t0415450-00;Locus_id=Os11g0415450;Note=Hypothetical conserved gene.;Transcript_evidence=AK064491 (DDBJ%2C Secondary hit);ORF_evidence=B9G0H4 (UniProt);Expression=AK064491;TENOR=Os11t0415450-00;KEGG=Os11t0415450-00
Chr11	irgsp1_rep	five_prime_UTR	12731798	12732336	.	-	.	Parent=Os11t0415450-00
Chr11	irgsp1_rep	five_prime_UTR	12731654	12731727	.	-	.	Parent=Os11t0415450-00
Chr11	irgsp1_rep	CDS	12731495	12731653	.	-	0	Parent=Os11t0415450-00
Chr11	irgsp1_rep	three_prime_UTR	12731190	12731494	.	-	.	Parent=Os11t0415450-00
Chr11	irgsp1_rep	three_prime_UTR	12730718	12731167	.	-	.	Parent=Os11t0415450-00
Chr11	irgsp1_rep	three_prime_UTR	12730441	12730623	.	-	.	Parent=Os11t0415450-00
Chr11	irgsp1_rep	mRNA	12811965	12818201	.	-	.	ID=Os11t0416900-01;Name=Os11t0416900-01;Locus_id=Os11g0416900;CGSNL Gene Symbol=ABCG28;CGSNL Gene Name=ABC TRANSPORTER G FAMILY MEMBER 28;Oryzabase Gene Symbol Synonym(s)=OsABCG28%2C OsSTA255;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 28;Note=ABC transporter-like domain containing protein.;Transcript_evidence=AK069444 (DDBJ%2C Best hit);ORF_evidence=XP_002303777.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=J023025A20;Oryzabase=12005;Expression=AK069444;TENOR=Os11t0416900-01;KEGG=Os11t0416900-01
Chr11	irgsp1_rep	five_prime_UTR	12818156	12818201	.	-	.	Parent=Os11t0416900-01
Chr11	irgsp1_rep	CDS	12817875	12818155	.	-	0	Parent=Os11t0416900-01
Chr11	irgsp1_rep	CDS	12817700	12817776	.	-	1	Parent=Os11t0416900-01
Chr11	irgsp1_rep	CDS	12817282	12817563	.	-	2	Parent=Os11t0416900-01
Chr11	irgsp1_rep	CDS	12816854	12816917	.	-	2	Parent=Os11t0416900-01
Chr11	irgsp1_rep	CDS	12816620	12816766	.	-	1	Parent=Os11t0416900-01
Chr11	irgsp1_rep	CDS	12816446	12816480	.	-	1	Parent=Os11t0416900-01
Chr11	irgsp1_rep	CDS	12816247	12816320	.	-	2	Parent=Os11t0416900-01
Chr11	irgsp1_rep	CDS	12815297	12816159	.	-	0	Parent=Os11t0416900-01
Chr11	irgsp1_rep	CDS	12814390	12814686	.	-	1	Parent=Os11t0416900-01
Chr11	irgsp1_rep	CDS	12813838	12814305	.	-	1	Parent=Os11t0416900-01
Chr11	irgsp1_rep	CDS	12813567	12813715	.	-	1	Parent=Os11t0416900-01
Chr11	irgsp1_rep	CDS	12812702	12812991	.	-	2	Parent=Os11t0416900-01
Chr11	irgsp1_rep	CDS	12812461	12812582	.	-	0	Parent=Os11t0416900-01
Chr11	irgsp1_rep	CDS	12812197	12812353	.	-	1	Parent=Os11t0416900-01
Chr11	irgsp1_rep	three_prime_UTR	12811965	12812196	.	-	.	Parent=Os11t0416900-01
Chr11	irgsp1_rep	mRNA	12829916	12832197	.	-	.	ID=Os11t0417132-01;Name=Os11t0417132-01;Locus_id=Os11g0417132;Note=Conserved hypothetical protein.;Transcript_evidence=AK241954 (DDBJ%2C Best hit);ORF_evidence=Q5Z546 (UniProt);NIAS_FLcDNA=J075092C12;TENOR=Os11t0417132-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	12832035	12832197	.	-	.	Parent=Os11t0417132-01
Chr11	irgsp1_rep	five_prime_UTR	12831854	12831900	.	-	.	Parent=Os11t0417132-01
Chr11	irgsp1_rep	CDS	12831551	12831853	.	-	0	Parent=Os11t0417132-01
Chr11	irgsp1_rep	three_prime_UTR	12829916	12831550	.	-	.	Parent=Os11t0417132-01
Chr11	irgsp1_rep	mRNA	12841426	12844401	.	-	.	ID=Os11t0417266-01;Name=Os11t0417266-01;Locus_id=Os11g0417266;Note=Conserved hypothetical protein.;Transcript_evidence=AK240663 (DDBJ%2C Best hit);ORF_evidence=Q5VNY8 (UniProt);NIAS_FLcDNA=J033035E01;TENOR=Os11t0417266-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	12843989	12844401	.	-	.	Parent=Os11t0417266-01
Chr11	irgsp1_rep	CDS	12843967	12843988	.	-	0	Parent=Os11t0417266-01
Chr11	irgsp1_rep	CDS	12842908	12842974	.	-	2	Parent=Os11t0417266-01
Chr11	irgsp1_rep	CDS	12841614	12841686	.	-	1	Parent=Os11t0417266-01
Chr11	irgsp1_rep	three_prime_UTR	12841426	12841613	.	-	.	Parent=Os11t0417266-01
Chr11	irgsp1_rep	mRNA	12849214	12853420	.	+	.	ID=Os11t0417300-01;Name=Os11t0417300-01;Locus_id=Os11g0417300;Oryzabase Gene Symbol Synonym(s)=OsSTA256;Note=Hypothetical gene.;Transcript_evidence=AK109537 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-119-D03;Oryzabase=19521;Expression=AK109537;TENOR=Os11t0417300-01;KEGG=Os11t0417300-01
Chr11	irgsp1_rep	five_prime_UTR	12849214	12849215	.	+	.	Parent=Os11t0417300-01
Chr11	irgsp1_rep	CDS	12849216	12849634	.	+	0	Parent=Os11t0417300-01
Chr11	irgsp1_rep	CDS	12849727	12849775	.	+	1	Parent=Os11t0417300-01
Chr11	irgsp1_rep	three_prime_UTR	12849776	12849932	.	+	.	Parent=Os11t0417300-01
Chr11	irgsp1_rep	three_prime_UTR	12850445	12850514	.	+	.	Parent=Os11t0417300-01
Chr11	irgsp1_rep	three_prime_UTR	12852169	12852814	.	+	.	Parent=Os11t0417300-01
Chr11	irgsp1_rep	three_prime_UTR	12852973	12853420	.	+	.	Parent=Os11t0417300-01
Chr11	irgsp1_rep	mRNA	12849253	12852640	.	+	.	ID=Os11t0417300-02;Name=Os11t0417300-02;Locus_id=Os11g0417300;Oryzabase Gene Symbol Synonym(s)=OsSTA256;Note=Conserved hypothetical protein.;Transcript_evidence=AK108485 (DDBJ%2C Best hit);ORF_evidence=NP_001140303.1 (RefSeq);NIAS_FLcDNA=002-143-F08;Oryzabase=19521;TENOR=Os11t0417300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	12849253	12849634	.	+	.	Parent=Os11t0417300-02
Chr11	irgsp1_rep	five_prime_UTR	12849727	12849740	.	+	.	Parent=Os11t0417300-02
Chr11	irgsp1_rep	CDS	12849741	12849857	.	+	0	Parent=Os11t0417300-02
Chr11	irgsp1_rep	three_prime_UTR	12849858	12849932	.	+	.	Parent=Os11t0417300-02
Chr11	irgsp1_rep	three_prime_UTR	12850445	12850514	.	+	.	Parent=Os11t0417300-02
Chr11	irgsp1_rep	three_prime_UTR	12852169	12852640	.	+	.	Parent=Os11t0417300-02
Chr11	irgsp1_rep	mRNA	12855016	12861914	.	+	.	ID=Os11t0417400-01;Name=Os11t0417400-01;Locus_id=Os11g0417400;Oryzabase Gene Symbol Synonym(s)=OsPP2C75%2C PP2C75%2C OsPP121;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C75%2C protein phosphatase 2C 75%2C protein phosphatase 121;Note=Protein phosphatase 2C domain containing protein.;Transcript_evidence=AK070536 (DDBJ%2C Best hit);ORF_evidence=Q2R637 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J023060C16;Oryzabase=17946;Expression=AK070536;TENOR=Os11t0417400-01;KEGG=Os11t0417400-01
Chr11	irgsp1_rep	five_prime_UTR	12855016	12855332	.	+	.	Parent=Os11t0417400-01
Chr11	irgsp1_rep	CDS	12855333	12855527	.	+	0	Parent=Os11t0417400-01
Chr11	irgsp1_rep	CDS	12856287	12856655	.	+	0	Parent=Os11t0417400-01
Chr11	irgsp1_rep	CDS	12856751	12856868	.	+	0	Parent=Os11t0417400-01
Chr11	irgsp1_rep	CDS	12860600	12860823	.	+	2	Parent=Os11t0417400-01
Chr11	irgsp1_rep	CDS	12860979	12861371	.	+	0	Parent=Os11t0417400-01
Chr11	irgsp1_rep	three_prime_UTR	12861372	12861914	.	+	.	Parent=Os11t0417400-01
Chr11	irgsp1_rep	mRNA	12900824	12905493	.	+	.	ID=Os11t0417800-01;Name=Os11t0417800-01;Locus_id=Os11g0417800;Note=Non-protein coding transcript.;Transcript_evidence=AK241951 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J075091G08;TENOR=Os11t0417800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	exon	12900824	12901466	.	+	.	Parent=Os11t0417800-01
Chr11	irgsp1_rep	exon	12905325	12905493	.	+	.	Parent=Os11t0417800-01
Chr11	irgsp1_rep	mRNA	13088669	13097254	.	+	.	ID=Os11t0420200-00;Name=Os11t0420200-00;Locus_id=Os11g0420200;Oryzabase Gene Symbol Synonym(s)=OsSTA257;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;Oryzabase=19522;TENOR=Os11t0420200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	13088669	13088892	.	+	0	Parent=Os11t0420200-00
Chr11	irgsp1_rep	CDS	13097128	13097254	.	+	1	Parent=Os11t0420200-00
Chr11	irgsp1_rep	mRNA	13200164	13202462	.	-	.	ID=Os11t0421800-01;Name=Os11t0421800-01;Locus_id=Os11g0421800;Note=Conserved hypothetical protein.;Transcript_evidence=AK106317 (DDBJ%2C Best hit);ORF_evidence=B9FUK7 (UniProt);NIAS_FLcDNA=002-101-E02;Expression=AK106317;TENOR=Os11t0421800-01;KEGG=Os11t0421800-01
Chr11	irgsp1_rep	five_prime_UTR	13202390	13202462	.	-	.	Parent=Os11t0421800-01
Chr11	irgsp1_rep	CDS	13202384	13202389	.	-	0	Parent=Os11t0421800-01
Chr11	irgsp1_rep	CDS	13202041	13202238	.	-	0	Parent=Os11t0421800-01
Chr11	irgsp1_rep	CDS	13201474	13201740	.	-	0	Parent=Os11t0421800-01
Chr11	irgsp1_rep	CDS	13200717	13200773	.	-	0	Parent=Os11t0421800-01
Chr11	irgsp1_rep	three_prime_UTR	13200164	13200716	.	-	.	Parent=Os11t0421800-01
Chr11	irgsp1_rep	mRNA	13207199	13207707	.	-	.	ID=Os11t0422000-01;Name=Os11t0422000-01;Locus_id=Os11g0422000;Note=Conserved hypothetical protein.;Transcript_evidence=AK062670 (DDBJ%2C Best hit);ORF_evidence=NP_001172634.1 (RefSeq);NIAS_FLcDNA=001-105-G03;Expression=AK062670;TENOR=Os11t0422000-01;KEGG=Os11t0422000-01
Chr11	irgsp1_rep	five_prime_UTR	13207704	13207707	.	-	.	Parent=Os11t0422000-01
Chr11	irgsp1_rep	CDS	13207500	13207703	.	-	0	Parent=Os11t0422000-01
Chr11	irgsp1_rep	three_prime_UTR	13207199	13207499	.	-	.	Parent=Os11t0422000-01
Chr11	irgsp1_rep	mRNA	13215413	13217278	.	+	.	ID=Os11t0422100-01;Name=Os11t0422100-01;Locus_id=Os11g0422100;Note=Hypothetical protein.;Transcript_evidence=AK110875 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-172-G02;TENOR=Os11t0422100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	13215413	13215413	.	+	.	Parent=Os11t0422100-01
Chr11	irgsp1_rep	CDS	13215414	13215893	.	+	0	Parent=Os11t0422100-01
Chr11	irgsp1_rep	three_prime_UTR	13215894	13216677	.	+	.	Parent=Os11t0422100-01
Chr11	irgsp1_rep	three_prime_UTR	13216830	13216922	.	+	.	Parent=Os11t0422100-01
Chr11	irgsp1_rep	three_prime_UTR	13217140	13217278	.	+	.	Parent=Os11t0422100-01
Chr11	irgsp1_rep	mRNA	13278988	13279927	.	-	.	ID=Os11t0423200-01;Name=Os11t0423200-01;Locus_id=Os11g0423200;Note=Similar to HAT family dimerisation domain containing protein.;Transcript_evidence=AK111297 (DDBJ%2C Best hit);ORF_evidence=Q2QYJ5 (UniProt);NIAS_FLcDNA=002-181-A11;Expression=AK111297;TENOR=Os11t0423200-01;KEGG=Os11t0423200-01
Chr11	irgsp1_rep	five_prime_UTR	13279368	13279927	.	-	.	Parent=Os11t0423200-01
Chr11	irgsp1_rep	CDS	13279065	13279367	.	-	0	Parent=Os11t0423200-01
Chr11	irgsp1_rep	three_prime_UTR	13278988	13279064	.	-	.	Parent=Os11t0423200-01
Chr11	irgsp1_rep	mRNA	13333478	13342107	.	+	.	ID=Os11t0423800-01;Name=Os11t0423800-01;Locus_id=Os11g0423800;Note=Similar to Mitochondrial carrier protein%2C expressed.;Transcript_evidence=AK064691 (DDBJ%2C Best hit),AK065787 (DDBJ%2C Best hit);ORF_evidence=Q2R5V9 (UniProt);InterPro=Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=002-116-E10,J013038G23;TENOR=Os11t0423800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	13333478	13333859	.	+	.	Parent=Os11t0423800-01
Chr11	irgsp1_rep	CDS	13333860	13333955	.	+	0	Parent=Os11t0423800-01
Chr11	irgsp1_rep	CDS	13334791	13334880	.	+	0	Parent=Os11t0423800-01
Chr11	irgsp1_rep	CDS	13338841	13338942	.	+	0	Parent=Os11t0423800-01
Chr11	irgsp1_rep	CDS	13340304	13340408	.	+	0	Parent=Os11t0423800-01
Chr11	irgsp1_rep	CDS	13340507	13340545	.	+	0	Parent=Os11t0423800-01
Chr11	irgsp1_rep	three_prime_UTR	13340546	13340594	.	+	.	Parent=Os11t0423800-01
Chr11	irgsp1_rep	three_prime_UTR	13340676	13340876	.	+	.	Parent=Os11t0423800-01
Chr11	irgsp1_rep	three_prime_UTR	13340953	13341051	.	+	.	Parent=Os11t0423800-01
Chr11	irgsp1_rep	three_prime_UTR	13341159	13341299	.	+	.	Parent=Os11t0423800-01
Chr11	irgsp1_rep	three_prime_UTR	13341428	13342107	.	+	.	Parent=Os11t0423800-01
Chr11	irgsp1_rep	mRNA	13377937	13379488	.	-	.	ID=Os11t0424400-01;Name=Os11t0424400-01;Locus_id=Os11g0424400;Note=Conserved hypothetical protein.;Transcript_evidence=AK071783 (DDBJ%2C Best hit);ORF_evidence=A2X683 (UniProt);NIAS_FLcDNA=J023110G02;Expression=AK071783;TENOR=Os11t0424400-01;KEGG=Os11t0424400-01
Chr11	irgsp1_rep	five_prime_UTR	13379241	13379488	.	-	.	Parent=Os11t0424400-01
Chr11	irgsp1_rep	CDS	13379022	13379240	.	-	0	Parent=Os11t0424400-01
Chr11	irgsp1_rep	CDS	13378728	13378946	.	-	0	Parent=Os11t0424400-01
Chr11	irgsp1_rep	CDS	13378051	13378590	.	-	0	Parent=Os11t0424400-01
Chr11	irgsp1_rep	three_prime_UTR	13377937	13378050	.	-	.	Parent=Os11t0424400-01
Chr11	irgsp1_rep	mRNA	13442842	13444953	.	+	.	ID=Os11t0425100-01;Name=Os11t0425100-01;Locus_id=Os11g0425100;Note=Peptidase C1A%2C papain family protein.;Transcript_evidence=AK064748 (DDBJ%2C Best hit);ORF_evidence=Q53K53 (UniProt);GO=Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase C1A%2C papain (IPR013128),Proteinase inhibitor I29%2C cathepsin propeptide (IPR013201);NIAS_FLcDNA=002-120-E11;Expression=AK064748;TENOR=Os11t0425100-01;KEGG=Os11t0425100-01
Chr11	irgsp1_rep	five_prime_UTR	13442842	13442901	.	+	.	Parent=Os11t0425100-01
Chr11	irgsp1_rep	CDS	13442902	13443400	.	+	0	Parent=Os11t0425100-01
Chr11	irgsp1_rep	CDS	13443499	13443598	.	+	2	Parent=Os11t0425100-01
Chr11	irgsp1_rep	CDS	13444322	13444355	.	+	1	Parent=Os11t0425100-01
Chr11	irgsp1_rep	three_prime_UTR	13444356	13444373	.	+	.	Parent=Os11t0425100-01
Chr11	irgsp1_rep	three_prime_UTR	13444491	13444953	.	+	.	Parent=Os11t0425100-01
Chr11	irgsp1_rep	mRNA	13442846	13446692	.	+	.	ID=Os11t0425100-02;Name=Os11t0425100-02;Locus_id=Os11g0425100;Note=Similar to Papain-like cysteine proteinase (Fragment).;Transcript_evidence=AK240650 (DDBJ%2C Best hit);ORF_evidence=B4ESG0 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase C1A%2C papain C-terminal (IPR000668),Peptidase C1A%2C papain (IPR013128);NIAS_FLcDNA=J023084F10;TENOR=Os11t0425100-02;KEGG=Os11t0425100-02 (EC:3.4.22.15)
Chr11	irgsp1_rep	five_prime_UTR	13442846	13445952	.	+	.	Parent=Os11t0425100-02
Chr11	irgsp1_rep	CDS	13445953	13446426	.	+	0	Parent=Os11t0425100-02
Chr11	irgsp1_rep	three_prime_UTR	13446427	13446692	.	+	.	Parent=Os11t0425100-02
Chr11	irgsp1_rep	mRNA	13460801	13466777	.	-	.	ID=Os11t0425300-01;Name=Os11t0425300-01;Locus_id=Os11g0425300;Note=Similar to predicted protein.;Transcript_evidence=AK067248 (DDBJ%2C Best hit);ORF_evidence=Q53K50 (UniProt);NIAS_FLcDNA=J013099D01;Expression=AK067248;TENOR=Os11t0425300-01;KEGG=Os11t0425300-01
Chr11	irgsp1_rep	five_prime_UTR	13466598	13466777	.	-	.	Parent=Os11t0425300-01
Chr11	irgsp1_rep	CDS	13466322	13466597	.	-	0	Parent=Os11t0425300-01
Chr11	irgsp1_rep	CDS	13463823	13463978	.	-	0	Parent=Os11t0425300-01
Chr11	irgsp1_rep	CDS	13463189	13463257	.	-	0	Parent=Os11t0425300-01
Chr11	irgsp1_rep	CDS	13462899	13463069	.	-	0	Parent=Os11t0425300-01
Chr11	irgsp1_rep	CDS	13462047	13462190	.	-	0	Parent=Os11t0425300-01
Chr11	irgsp1_rep	CDS	13461571	13461732	.	-	0	Parent=Os11t0425300-01
Chr11	irgsp1_rep	CDS	13461405	13461470	.	-	0	Parent=Os11t0425300-01
Chr11	irgsp1_rep	CDS	13461252	13461311	.	-	0	Parent=Os11t0425300-01
Chr11	irgsp1_rep	CDS	13461117	13461161	.	-	0	Parent=Os11t0425300-01
Chr11	irgsp1_rep	three_prime_UTR	13460801	13461116	.	-	.	Parent=Os11t0425300-01
Chr11	irgsp1_rep	mRNA	13460527	13466777	.	-	.	ID=Os11t0425300-02;Name=Os11t0425300-02;Locus_id=Os11g0425300;Note=Conserved hypothetical protein.;Transcript_evidence=AK065810 (DDBJ%2C Best hit);ORF_evidence=Q53K52 (UniProt);NIAS_FLcDNA=J013039B05;Expression=AK065810;TENOR=Os11t0425300-02;KEGG=Os11t0425300-02
Chr11	irgsp1_rep	five_prime_UTR	13466598	13466777	.	-	.	Parent=Os11t0425300-02
Chr11	irgsp1_rep	CDS	13466322	13466597	.	-	0	Parent=Os11t0425300-02
Chr11	irgsp1_rep	CDS	13463823	13463978	.	-	0	Parent=Os11t0425300-02
Chr11	irgsp1_rep	CDS	13463189	13463257	.	-	0	Parent=Os11t0425300-02
Chr11	irgsp1_rep	CDS	13462899	13463069	.	-	0	Parent=Os11t0425300-02
Chr11	irgsp1_rep	CDS	13462047	13462190	.	-	0	Parent=Os11t0425300-02
Chr11	irgsp1_rep	CDS	13461571	13461732	.	-	0	Parent=Os11t0425300-02
Chr11	irgsp1_rep	CDS	13461405	13461470	.	-	0	Parent=Os11t0425300-02
Chr11	irgsp1_rep	CDS	13461257	13461304	.	-	0	Parent=Os11t0425300-02
Chr11	irgsp1_rep	three_prime_UTR	13461252	13461256	.	-	.	Parent=Os11t0425300-02
Chr11	irgsp1_rep	three_prime_UTR	13460527	13461161	.	-	.	Parent=Os11t0425300-02
Chr11	irgsp1_rep	mRNA	13465232	13465673	.	+	.	ID=Os11t0425450-00;Name=Os11t0425450-00;Locus_id=Os11g0425450;Note=Conserved hypothetical protein.;Transcript_evidence=EU959644 (DDBJ);ORF_evidence=A2WNG1 (UniProt);TENOR=Os11t0425450-00
Chr11	irgsp1_rep	five_prime_UTR	13465232	13465312	.	+	.	Parent=Os11t0425450-00
Chr11	irgsp1_rep	CDS	13465313	13465555	.	+	0	Parent=Os11t0425450-00
Chr11	irgsp1_rep	three_prime_UTR	13465556	13465673	.	+	.	Parent=Os11t0425450-00
Chr11	irgsp1_rep	mRNA	13506337	13507154	.	-	.	ID=Os11t0425600-01;Name=Os11t0425600-01;Locus_id=Os11g0425600;Note=Four F5 protein family protein.;Transcript_evidence=AK121882 (DDBJ%2C Best hit),AK071167 (DDBJ%2C Best hit);ORF_evidence=B6TMS6 (UniProt);NIAS_FLcDNA=J033104O03,J023081N14;TENOR=Os11t0425600-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	13507034	13507154	.	-	.	Parent=Os11t0425600-01
Chr11	irgsp1_rep	CDS	13507027	13507033	.	-	0	Parent=Os11t0425600-01
Chr11	irgsp1_rep	CDS	13506794	13506893	.	-	2	Parent=Os11t0425600-01
Chr11	irgsp1_rep	CDS	13506579	13506684	.	-	1	Parent=Os11t0425600-01
Chr11	irgsp1_rep	three_prime_UTR	13506337	13506578	.	-	.	Parent=Os11t0425600-01
Chr11	irgsp1_rep	mRNA	13521343	13526257	.	+	.	ID=Os11t0425800-01;Name=Os11t0425800-01;Locus_id=Os11g0425800;Note=Similar to 60S ribosomal protein L13a.;Transcript_evidence=AK066603 (DDBJ%2C Best hit);ORF_evidence=Q5I7L1 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L13 (IPR005822),Ribosomal protein L13 domain (IPR023564);NIAS_FLcDNA=J013071H21;Expression=AK066603;TENOR=Os11t0425800-01;KEGG=Os11t0425800-01
Chr11	irgsp1_rep	five_prime_UTR	13521343	13521725	.	+	.	Parent=Os11t0425800-01
Chr11	irgsp1_rep	CDS	13521726	13521844	.	+	0	Parent=Os11t0425800-01
Chr11	irgsp1_rep	CDS	13521946	13522039	.	+	1	Parent=Os11t0425800-01
Chr11	irgsp1_rep	three_prime_UTR	13522040	13522248	.	+	.	Parent=Os11t0425800-01
Chr11	irgsp1_rep	three_prime_UTR	13523724	13523829	.	+	.	Parent=Os11t0425800-01
Chr11	irgsp1_rep	three_prime_UTR	13524848	13525783	.	+	.	Parent=Os11t0425800-01
Chr11	irgsp1_rep	three_prime_UTR	13525895	13526257	.	+	.	Parent=Os11t0425800-01
Chr11	irgsp1_rep	mRNA	13560125	13560663	.	+	.	ID=Os11t0426400-00;Name=Os11t0426400-00;Locus_id=Os11g0426400;CGSNL Gene Symbol=UCL34;CGSNL Gene Name=UCLACYANIN-LIKE PROTEIN 34;Oryzabase Gene Symbol Synonym(s)=OsUCL34;Oryzabase Gene Name Synonym(s)=uclacyanin-like protein 34;Note=Cupredoxin domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01M47 (UniProt);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Blue (type 1) copper domain (IPR000923),Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);Oryzabase=9783;TENOR=Os11t0426400-00;KEGG=Os11t0426400-00
Chr11	irgsp1_rep	CDS	13560125	13560214	.	+	0	Parent=Os11t0426400-00
Chr11	irgsp1_rep	CDS	13560472	13560663	.	+	0	Parent=Os11t0426400-00
Chr11	irgsp1_rep	mRNA	13592733	13596309	.	+	.	ID=Os11t0426850-01;Name=Os11t0426850-01;Locus_id=Os11g0426850;Note=Similar to Zinc knuckle family protein.;Transcript_evidence=AK288431 (DDBJ%2C Best hit);ORF_evidence=Q2QWS1 (UniProt);NIAS_FLcDNA=J090033G11;TENOR=Os11t0426850-01
Chr11	irgsp1_rep	five_prime_UTR	13592733	13592790	.	+	.	Parent=Os11t0426850-01
Chr11	irgsp1_rep	CDS	13592791	13593063	.	+	0	Parent=Os11t0426850-01
Chr11	irgsp1_rep	three_prime_UTR	13593064	13596309	.	+	.	Parent=Os11t0426850-01
Chr11	irgsp1_rep	mRNA	13626272	13631483	.	+	.	ID=Os11t0427401-01;Name=Os11t0427401-01;Locus_id=Os11g0427401;Note=Conserved hypothetical protein.;Transcript_evidence=AK288624 (DDBJ%2C Best hit);ORF_evidence=Q8S6B5 (UniProt);NIAS_FLcDNA=J090054H14;TENOR=Os11t0427401-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	13626272	13626632	.	+	.	Parent=Os11t0427401-01
Chr11	irgsp1_rep	CDS	13626633	13626839	.	+	0	Parent=Os11t0427401-01
Chr11	irgsp1_rep	three_prime_UTR	13626840	13631483	.	+	.	Parent=Os11t0427401-01
Chr11	irgsp1_rep	mRNA	13632455	13637346	.	-	.	ID=Os11t0427500-01;Name=Os11t0427500-01;Locus_id=Os11g0427500;Note=Hypothetical conserved gene.;Transcript_evidence=AK067349 (DDBJ%2C Best hit);ORF_evidence=B9GAH3 (UniProt);InterPro=Myb/SANT-like domain (IPR024752);NIAS_FLcDNA=J013099E13;Expression=AK067349;TENOR=Os11t0427500-01;KEGG=Os11t0427500-01
Chr11	irgsp1_rep	CDS	13637221	13637346	.	-	0	Parent=Os11t0427500-01
Chr11	irgsp1_rep	CDS	13636079	13636151	.	-	0	Parent=Os11t0427500-01
Chr11	irgsp1_rep	CDS	13634570	13634716	.	-	2	Parent=Os11t0427500-01
Chr11	irgsp1_rep	CDS	13634123	13634475	.	-	2	Parent=Os11t0427500-01
Chr11	irgsp1_rep	three_prime_UTR	13633988	13634122	.	-	.	Parent=Os11t0427500-01
Chr11	irgsp1_rep	three_prime_UTR	13633251	13633830	.	-	.	Parent=Os11t0427500-01
Chr11	irgsp1_rep	three_prime_UTR	13632455	13632715	.	-	.	Parent=Os11t0427500-01
Chr11	irgsp1_rep	mRNA	13632428	13637209	.	-	.	ID=Os11t0427500-02;Name=Os11t0427500-02;Locus_id=Os11g0427500;Note=Hypothetical conserved gene.;Transcript_evidence=AK066064 (DDBJ%2C Best hit);ORF_evidence=B9GAH3 (UniProt);InterPro=Myb/SANT-like domain (IPR024752);NIAS_FLcDNA=J013057A08;Expression=AK066064;TENOR=Os11t0427500-02;KEGG=Os11t0427500-02
Chr11	irgsp1_rep	five_prime_UTR	13637185	13637209	.	-	.	Parent=Os11t0427500-02
Chr11	irgsp1_rep	CDS	13637017	13637184	.	-	0	Parent=Os11t0427500-02
Chr11	irgsp1_rep	CDS	13636079	13636151	.	-	0	Parent=Os11t0427500-02
Chr11	irgsp1_rep	CDS	13634570	13634716	.	-	2	Parent=Os11t0427500-02
Chr11	irgsp1_rep	CDS	13634123	13634475	.	-	2	Parent=Os11t0427500-02
Chr11	irgsp1_rep	three_prime_UTR	13633988	13634122	.	-	.	Parent=Os11t0427500-02
Chr11	irgsp1_rep	three_prime_UTR	13633251	13633830	.	-	.	Parent=Os11t0427500-02
Chr11	irgsp1_rep	three_prime_UTR	13632428	13632715	.	-	.	Parent=Os11t0427500-02
Chr11	irgsp1_rep	mRNA	13634688	13635379	.	-	.	ID=Os11t0427500-03;Name=Os11t0427500-03;Locus_id=Os11g0427500;Note=Similar to H0418A01.5 protein.;Transcript_evidence=AK062510 (DDBJ%2C Best hit);ORF_evidence=Q01J63 (UniProt);GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Putative harbinger transposase-derived nuclease (IPR006912);NIAS_FLcDNA=001-104-B12;TENOR=Os11t0427500-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	13635135	13635379	.	-	.	Parent=Os11t0427500-03
Chr11	irgsp1_rep	CDS	13634889	13635134	.	-	0	Parent=Os11t0427500-03
Chr11	irgsp1_rep	three_prime_UTR	13634688	13634888	.	-	.	Parent=Os11t0427500-03
Chr11	irgsp1_rep	mRNA	13650294	13653339	.	+	.	ID=Os11t0427601-01;Name=Os11t0427601-01;Locus_id=Os11g0427601;Note=Hypothetical conserved gene.;Transcript_evidence=AK288462 (DDBJ%2C Best hit);ORF_evidence=Q7F0T8 (UniProt);NIAS_FLcDNA=J090036C06;TENOR=Os11t0427601-01;KEGG=Os11t0427601-01
Chr11	irgsp1_rep	five_prime_UTR	13650294	13650852	.	+	.	Parent=Os11t0427601-01
Chr11	irgsp1_rep	CDS	13650853	13650972	.	+	0	Parent=Os11t0427601-01
Chr11	irgsp1_rep	three_prime_UTR	13650973	13653339	.	+	.	Parent=Os11t0427601-01
Chr11	irgsp1_rep	mRNA	13661556	13663478	.	+	.	ID=Os11t0427700-01;Name=Os11t0427700-01;Locus_id=Os11g0427700;Note=Xanthine/uracil/vitamin C permease family protein.;Transcript_evidence=AK071806 (DDBJ%2C Best hit);ORF_evidence=XP_002322223.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Xanthine/uracil/vitamin C permease (IPR006043);NIAS_FLcDNA=J023111J10;Expression=AK071806;TENOR=Os11t0427700-01;KEGG=Os11t0427700-01
Chr11	irgsp1_rep	five_prime_UTR	13661556	13661607	.	+	.	Parent=Os11t0427700-01
Chr11	irgsp1_rep	CDS	13661608	13663248	.	+	0	Parent=Os11t0427700-01
Chr11	irgsp1_rep	three_prime_UTR	13663249	13663478	.	+	.	Parent=Os11t0427700-01
Chr11	irgsp1_rep	mRNA	13668526	13669487	.	+	.	ID=Os11t0427800-01;Name=Os11t0427800-01;Locus_id=Os11g0427800;Oryzabase Gene Symbol Synonym(s)=OsLTP1.14%2C OsLtpI.14;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein 1.14%2C lipid transfer protein 1.14%2C type 1 non-specific lipid transfer protein 14%2C Non-specific lipid-transfer protein 1;Note=Similar to Lipid transfer protein LPT III.;Transcript_evidence=AK061288 (DDBJ%2C Best hit),AK071260 (DDBJ%2C Best hit);ORF_evidence=A2ZDR8 (UniProt);GO=Biological Process: lipid transport (GO:0006869),Molecular Function: lipid binding (GO:0008289);InterPro=Plant lipid transfer protein/Par allergen (IPR000528),Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=006-212-H12,J023086A05;Oryzabase=13523;TENOR=Os11t0427800-01
Chr11	irgsp1_rep	five_prime_UTR	13668526	13668640	.	+	.	Parent=Os11t0427800-01
Chr11	irgsp1_rep	CDS	13668641	13668984	.	+	0	Parent=Os11t0427800-01
Chr11	irgsp1_rep	CDS	13669101	13669110	.	+	1	Parent=Os11t0427800-01
Chr11	irgsp1_rep	three_prime_UTR	13669111	13669487	.	+	.	Parent=Os11t0427800-01
Chr11	irgsp1_rep	mRNA	13668641	13668985	.	-	.	ID=Os11t0428150-00;Name=Os11t0428150-00;Locus_id=Os11g0428150;Note=Hypothetical protein.;Transcript_evidence=EU975148 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0428150-00
Chr11	irgsp1_rep	CDS	13668737	13668985	.	-	0	Parent=Os11t0428150-00
Chr11	irgsp1_rep	three_prime_UTR	13668641	13668736	.	-	.	Parent=Os11t0428150-00
Chr11	irgsp1_rep	mRNA	13707271	13709975	.	-	.	ID=Os11t0428500-01;Name=Os11t0428500-01;Locus_id=Os11g0428500;Note=Conserved hypothetical protein.;Transcript_evidence=AK119284 (DDBJ%2C Best hit);ORF_evidence=B8BK90 (UniProt);NIAS_FLcDNA=001-130-C09;Oryzabase=20463;TENOR=Os11t0428500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	13709362	13709975	.	-	.	Parent=Os11t0428500-01
Chr11	irgsp1_rep	CDS	13709140	13709361	.	-	0	Parent=Os11t0428500-01
Chr11	irgsp1_rep	three_prime_UTR	13707271	13709139	.	-	.	Parent=Os11t0428500-01
Chr11	irgsp1_rep	mRNA	13719439	13720479	.	+	.	ID=Os11t0428700-00;Name=Os11t0428700-00;Locus_id=Os11g0428700;Note=Similar to predicted protein.;Transcript_evidence=EU966496 (DDBJ);ORF_evidence=NP_180360.4 (RefSeq);InterPro=Protein of unknown function DUF597 (IPR006734);TENOR=Os11t0428700-00;KEGG=Os11t0428700-00
Chr11	irgsp1_rep	five_prime_UTR	13719439	13719626	.	+	.	Parent=Os11t0428700-00
Chr11	irgsp1_rep	CDS	13719627	13719839	.	+	0	Parent=Os11t0428700-00
Chr11	irgsp1_rep	CDS	13719928	13720110	.	+	0	Parent=Os11t0428700-00
Chr11	irgsp1_rep	three_prime_UTR	13720111	13720164	.	+	.	Parent=Os11t0428700-00
Chr11	irgsp1_rep	three_prime_UTR	13720390	13720479	.	+	.	Parent=Os11t0428700-00
Chr11	irgsp1_rep	mRNA	13723177	13724624	.	+	.	ID=Os11t0428800-01;Name=Os11t0428800-01;Locus_id=Os11g0428800;CGSNL Gene Symbol=UCL35;CGSNL Gene Name=UCLACYANIN-LIKE PROTEIN 35;Oryzabase Gene Symbol Synonym(s)=OsUCL35;Oryzabase Gene Name Synonym(s)=uclacyanin-like protein 35;Note=Cupredoxin domain containing protein.;Transcript_evidence=AK243634 (DDBJ%2C Best hit);ORF_evidence=NP_001067784.1 (RefSeq);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Blue (type 1) copper domain (IPR000923),Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);NIAS_FLcDNA=J100087F13;Oryzabase=9784;TENOR=Os11t0428800-01;KEGG=Os11t0428800-01
Chr11	irgsp1_rep	five_prime_UTR	13723177	13723258	.	+	.	Parent=Os11t0428800-01
Chr11	irgsp1_rep	CDS	13723259	13723427	.	+	0	Parent=Os11t0428800-01
Chr11	irgsp1_rep	CDS	13724114	13724319	.	+	2	Parent=Os11t0428800-01
Chr11	irgsp1_rep	three_prime_UTR	13724320	13724624	.	+	.	Parent=Os11t0428800-01
Chr11	irgsp1_rep	mRNA	13709042	13710243	.	+	.	ID=Os11t0429000-01;Name=Os11t0429000-01;Locus_id=Os11g0429000;Note=Conserved hypothetical protein.;Transcript_evidence=AK067370 (DDBJ%2C Best hit);ORF_evidence=NP_001176507.1 (RefSeq);NIAS_FLcDNA=J013105M23;Expression=AK067370;TENOR=Os11t0429000-01;KEGG=Os11t0429000-01
Chr11	irgsp1_rep	five_prime_UTR	13709042	13709054	.	+	.	Parent=Os11t0429000-01
Chr11	irgsp1_rep	CDS	13709055	13709585	.	+	0	Parent=Os11t0429000-01
Chr11	irgsp1_rep	three_prime_UTR	13709586	13710243	.	+	.	Parent=Os11t0429000-01
Chr11	irgsp1_rep	mRNA	13744266	13749580	.	-	.	ID=Os11t0429100-00;Name=Os11t0429100-00;Locus_id=Os11g0429100;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001067785.1 (RefSeq);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os11t0429100-00;KEGG=Os11t0429100-00
Chr11	irgsp1_rep	CDS	13745681	13749580	.	-	0	Parent=Os11t0429100-00
Chr11	irgsp1_rep	CDS	13745324	13745590	.	-	0	Parent=Os11t0429100-00
Chr11	irgsp1_rep	CDS	13744266	13744397	.	-	0	Parent=Os11t0429100-00
Chr11	irgsp1_rep	mRNA	13752524	13753800	.	+	.	ID=Os11t0429200-01;Name=Os11t0429200-01;Locus_id=Os11g0429200;Note=Hypothetical gene.;Transcript_evidence=AK065356 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013010K21;Expression=AK065356;TENOR=Os11t0429200-01;KEGG=Os11t0429200-01
Chr11	irgsp1_rep	CDS	13752524	13752745	.	+	0	Parent=Os11t0429200-01
Chr11	irgsp1_rep	three_prime_UTR	13752746	13753800	.	+	.	Parent=Os11t0429200-01
Chr11	irgsp1_rep	mRNA	13752562	13757460	.	+	.	ID=Os11t0429200-02;Name=Os11t0429200-02;Locus_id=Os11g0429200;Note=Hypothetical gene.;Transcript_evidence=AK073173 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033023N06;Expression=AK073173;TENOR=Os11t0429200-02;KEGG=Os11t0429200-02
Chr11	irgsp1_rep	five_prime_UTR	13752562	13752563	.	+	.	Parent=Os11t0429200-02
Chr11	irgsp1_rep	CDS	13752564	13752845	.	+	0	Parent=Os11t0429200-02
Chr11	irgsp1_rep	CDS	13753417	13753425	.	+	0	Parent=Os11t0429200-02
Chr11	irgsp1_rep	three_prime_UTR	13753426	13753569	.	+	.	Parent=Os11t0429200-02
Chr11	irgsp1_rep	three_prime_UTR	13754255	13754392	.	+	.	Parent=Os11t0429200-02
Chr11	irgsp1_rep	three_prime_UTR	13756914	13757017	.	+	.	Parent=Os11t0429200-02
Chr11	irgsp1_rep	three_prime_UTR	13757128	13757460	.	+	.	Parent=Os11t0429200-02
Chr11	irgsp1_rep	mRNA	13763875	13764561	.	-	.	ID=Os11t0429433-00;Name=Os11t0429433-00;Locus_id=Os11g0429433;Note=Hypothetical gene.;Transcript_evidence=CT835704 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os11t0429433-00;KEGG=Os11t0429433-00
Chr11	irgsp1_rep	five_prime_UTR	13764290	13764561	.	-	.	Parent=Os11t0429433-00
Chr11	irgsp1_rep	CDS	13764068	13764289	.	-	0	Parent=Os11t0429433-00
Chr11	irgsp1_rep	three_prime_UTR	13763875	13764067	.	-	.	Parent=Os11t0429433-00
Chr11	irgsp1_rep	mRNA	13781942	13782849	.	+	.	ID=Os11t0429900-00;Name=Os11t0429900-00;Locus_id=Os11g0429900;Note=Non-protein coding transcript.;Transcript_evidence=CT835650 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os11t0429900-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	exon	13781942	13782098	.	+	.	Parent=Os11t0429900-00
Chr11	irgsp1_rep	exon	13782521	13782849	.	+	.	Parent=Os11t0429900-00
Chr11	irgsp1_rep	mRNA	13770580	13785516	.	-	.	ID=Os11t0430000-00;Name=Os11t0430000-00;Locus_id=Os11g0430000;CGSNL Gene Symbol=SCP49;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 49;Oryzabase Gene Symbol Synonym(s)=OsSCP49%2C OsSCP50%2C SCP50;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 49%2C Serine carboxypeptidase 50;Note=Similar to serine carboxypeptidase 1.;Transcript_evidence=AK367892 (DDBJ);ORF_evidence=NP_001149249.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);Oryzabase=19227;TENOR=Os11t0430000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	13785221	13785516	.	-	0	Parent=Os11t0430000-00
Chr11	irgsp1_rep	CDS	13784942	13785087	.	-	1	Parent=Os11t0430000-00
Chr11	irgsp1_rep	CDS	13784657	13784859	.	-	2	Parent=Os11t0430000-00
Chr11	irgsp1_rep	CDS	13784438	13784540	.	-	0	Parent=Os11t0430000-00
Chr11	irgsp1_rep	CDS	13784252	13784289	.	-	2	Parent=Os11t0430000-00
Chr11	irgsp1_rep	CDS	13783973	13784074	.	-	0	Parent=Os11t0430000-00
Chr11	irgsp1_rep	CDS	13783644	13783727	.	-	0	Parent=Os11t0430000-00
Chr11	irgsp1_rep	CDS	13773733	13773882	.	-	0	Parent=Os11t0430000-00
Chr11	irgsp1_rep	CDS	13772839	13772910	.	-	0	Parent=Os11t0430000-00
Chr11	irgsp1_rep	CDS	13772619	13772740	.	-	0	Parent=Os11t0430000-00
Chr11	irgsp1_rep	CDS	13771859	13771972	.	-	1	Parent=Os11t0430000-00
Chr11	irgsp1_rep	CDS	13771675	13771720	.	-	1	Parent=Os11t0430000-00
Chr11	irgsp1_rep	CDS	13770602	13770685	.	-	0	Parent=Os11t0430000-00
Chr11	irgsp1_rep	three_prime_UTR	13770580	13770601	.	-	.	Parent=Os11t0430000-00
Chr11	irgsp1_rep	mRNA	13787003	13787620	.	+	.	ID=Os11t0430100-00;Name=Os11t0430100-00;Locus_id=Os11g0430100;Note=Hypothetical conserved gene.;Transcript_evidence=CT835644 (DDBJ%2C Best hit);ORF_evidence=B8BK94 (UniProt);TENOR=Os11t0430100-00;KEGG=Os11t0430100-00
Chr11	irgsp1_rep	five_prime_UTR	13787003	13787073	.	+	.	Parent=Os11t0430100-00
Chr11	irgsp1_rep	CDS	13787074	13787470	.	+	0	Parent=Os11t0430100-00
Chr11	irgsp1_rep	CDS	13787478	13787602	.	+	2	Parent=Os11t0430100-00
Chr11	irgsp1_rep	three_prime_UTR	13787603	13787620	.	+	.	Parent=Os11t0430100-00
Chr11	irgsp1_rep	mRNA	13802497	13812048	.	-	.	ID=Os11t0430600-00;Name=Os11t0430600-00;Locus_id=Os11g0430600;Note=Conserved hypothetical protein.;Transcript_evidence=FP100378 (DDBJ);ORF_evidence=Q53PJ6 (UniProt);TENOR=Os11t0430600-00
Chr11	irgsp1_rep	CDS	13811860	13812048	.	-	0	Parent=Os11t0430600-00
Chr11	irgsp1_rep	CDS	13810885	13810956	.	-	0	Parent=Os11t0430600-00
Chr11	irgsp1_rep	CDS	13810683	13810775	.	-	0	Parent=Os11t0430600-00
Chr11	irgsp1_rep	three_prime_UTR	13810658	13810682	.	-	.	Parent=Os11t0430600-00
Chr11	irgsp1_rep	three_prime_UTR	13807217	13807330	.	-	.	Parent=Os11t0430600-00
Chr11	irgsp1_rep	three_prime_UTR	13802497	13802647	.	-	.	Parent=Os11t0430600-00
Chr11	irgsp1_rep	mRNA	13837263	13841215	.	-	.	ID=Os11t0431100-00;Name=Os11t0431100-00;Locus_id=Os11g0431100;CGSNL Gene Symbol=SCP51;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 51;Oryzabase Gene Symbol Synonym(s)=OsSCP51;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 51;Note=Similar to Serine carboxypeptidase family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q53PK4 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563);Oryzabase=19228;TENOR=Os11t0431100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	13841073	13841215	.	-	0	Parent=Os11t0431100-00
Chr11	irgsp1_rep	CDS	13840832	13840977	.	-	1	Parent=Os11t0431100-00
Chr11	irgsp1_rep	CDS	13840561	13840742	.	-	2	Parent=Os11t0431100-00
Chr11	irgsp1_rep	CDS	13840348	13840450	.	-	0	Parent=Os11t0431100-00
Chr11	irgsp1_rep	CDS	13840192	13840229	.	-	2	Parent=Os11t0431100-00
Chr11	irgsp1_rep	CDS	13837801	13837884	.	-	0	Parent=Os11t0431100-00
Chr11	irgsp1_rep	CDS	13837263	13837328	.	-	0	Parent=Os11t0431100-00
Chr11	irgsp1_rep	mRNA	13864245	13869067	.	-	.	ID=Os11t0431400-00;Name=Os11t0431400-00;Locus_id=Os11g0431400;CGSNL Gene Symbol=SCP53;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 53;Oryzabase Gene Symbol Synonym(s)=OsSCP53;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 53;Note=Similar to Serine carboxypeptidase.;Transcript_evidence=CT837582 (DDBJ%2C Best hit);ORF_evidence=Q53PB8 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563);Oryzabase=19230;TENOR=Os11t0431400-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	13868899	13869067	.	-	.	Parent=Os11t0431400-00
Chr11	irgsp1_rep	CDS	13868727	13868898	.	-	0	Parent=Os11t0431400-00
Chr11	irgsp1_rep	CDS	13868435	13868634	.	-	2	Parent=Os11t0431400-00
Chr11	irgsp1_rep	CDS	13868175	13868345	.	-	0	Parent=Os11t0431400-00
Chr11	irgsp1_rep	three_prime_UTR	13868144	13868174	.	-	.	Parent=Os11t0431400-00
Chr11	irgsp1_rep	three_prime_UTR	13867574	13867675	.	-	.	Parent=Os11t0431400-00
Chr11	irgsp1_rep	three_prime_UTR	13867386	13867474	.	-	.	Parent=Os11t0431400-00
Chr11	irgsp1_rep	three_prime_UTR	13864973	13865125	.	-	.	Parent=Os11t0431400-00
Chr11	irgsp1_rep	three_prime_UTR	13864674	13864745	.	-	.	Parent=Os11t0431400-00
Chr11	irgsp1_rep	three_prime_UTR	13864245	13864564	.	-	.	Parent=Os11t0431400-00
Chr11	irgsp1_rep	mRNA	13890814	13915531	.	-	.	ID=Os11t0431700-01;Name=Os11t0431700-01;Locus_id=Os11g0431700;CGSNL Gene Symbol=SCP54;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 54;Oryzabase Gene Symbol Synonym(s)=OsSCP54%2C OsSCP55%2C SCP55;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 54%2C Serine carboxypeptidase 55;Note=Similar to Serine carboxypeptidase.;Transcript_evidence=AK111439 (DDBJ%2C Best hit);ORF_evidence=Q53PB8 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563);NIAS_FLcDNA=002-183-A05;Oryzabase=19231;Expression=AK111439;TENOR=Os11t0431700-01;KEGG=Os11t0431700-01 (EC:3.4.16.5)
Chr11	irgsp1_rep	five_prime_UTR	13915478	13915531	.	-	.	Parent=Os11t0431700-01
Chr11	irgsp1_rep	CDS	13915344	13915477	.	-	0	Parent=Os11t0431700-01
Chr11	irgsp1_rep	CDS	13915099	13915244	.	-	1	Parent=Os11t0431700-01
Chr11	irgsp1_rep	CDS	13914820	13915019	.	-	2	Parent=Os11t0431700-01
Chr11	irgsp1_rep	CDS	13914612	13914714	.	-	0	Parent=Os11t0431700-01
Chr11	irgsp1_rep	CDS	13913733	13913770	.	-	2	Parent=Os11t0431700-01
Chr11	irgsp1_rep	CDS	13913133	13913234	.	-	0	Parent=Os11t0431700-01
Chr11	irgsp1_rep	CDS	13912942	13913025	.	-	0	Parent=Os11t0431700-01
Chr11	irgsp1_rep	CDS	13895276	13895428	.	-	0	Parent=Os11t0431700-01
Chr11	irgsp1_rep	CDS	13895115	13895186	.	-	0	Parent=Os11t0431700-01
Chr11	irgsp1_rep	CDS	13894921	13895020	.	-	0	Parent=Os11t0431700-01
Chr11	irgsp1_rep	CDS	13893776	13893825	.	-	2	Parent=Os11t0431700-01
Chr11	irgsp1_rep	three_prime_UTR	13893712	13893775	.	-	.	Parent=Os11t0431700-01
Chr11	irgsp1_rep	three_prime_UTR	13893502	13893547	.	-	.	Parent=Os11t0431700-01
Chr11	irgsp1_rep	three_prime_UTR	13890814	13890990	.	-	.	Parent=Os11t0431700-01
Chr11	irgsp1_rep	mRNA	13944209	13945067	.	-	.	ID=Os11t0432301-00;Name=Os11t0432301-00;Locus_id=Os11g0432301;Note=Hypothetical gene.;Transcript_evidence=BT016874 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0432301-00;KEGG=Os11t0432301-00
Chr11	irgsp1_rep	five_prime_UTR	13945012	13945067	.	-	.	Parent=Os11t0432301-00
Chr11	irgsp1_rep	CDS	13944748	13945011	.	-	0	Parent=Os11t0432301-00
Chr11	irgsp1_rep	three_prime_UTR	13944707	13944747	.	-	.	Parent=Os11t0432301-00
Chr11	irgsp1_rep	three_prime_UTR	13944209	13944490	.	-	.	Parent=Os11t0432301-00
Chr11	irgsp1_rep	mRNA	13941561	13945484	.	+	.	ID=Os11t0432400-01;Name=Os11t0432400-01;Locus_id=Os11g0432400;Note=Similar to 2-oxoglutarate/malate translocator.;Transcript_evidence=AK068090 (DDBJ%2C Best hit);ORF_evidence=Q40918 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial inner membrane (GO:0005743),Molecular Function: binding (GO:0005488);InterPro=Mitochondrial carrier protein (IPR002067),Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J013132N13;Expression=AK068090;TENOR=Os11t0432400-01;KEGG=Os11t0432400-01
Chr11	irgsp1_rep	five_prime_UTR	13941561	13941712	.	+	.	Parent=Os11t0432400-01
Chr11	irgsp1_rep	CDS	13941713	13941862	.	+	0	Parent=Os11t0432400-01
Chr11	irgsp1_rep	CDS	13942812	13942895	.	+	0	Parent=Os11t0432400-01
Chr11	irgsp1_rep	CDS	13943158	13943219	.	+	0	Parent=Os11t0432400-01
Chr11	irgsp1_rep	CDS	13944071	13944432	.	+	1	Parent=Os11t0432400-01
Chr11	irgsp1_rep	CDS	13944853	13945067	.	+	2	Parent=Os11t0432400-01
Chr11	irgsp1_rep	CDS	13945161	13945217	.	+	0	Parent=Os11t0432400-01
Chr11	irgsp1_rep	three_prime_UTR	13945218	13945484	.	+	.	Parent=Os11t0432400-01
Chr11	irgsp1_rep	mRNA	13941673	13945493	.	+	.	ID=Os11t0432400-02;Name=Os11t0432400-02;Locus_id=Os11g0432400;Note=Similar to 2-oxoglutarate/malate translocator.;Transcript_evidence=AK058511 (DDBJ%2C Best hit);ORF_evidence=Q40918 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial inner membrane (GO:0005743),Molecular Function: binding (GO:0005488);InterPro=Mitochondrial carrier protein (IPR002067),Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=001-016-G08;Expression=AK058511;TENOR=Os11t0432400-02;KEGG=Os11t0432400-02
Chr11	irgsp1_rep	five_prime_UTR	13941673	13941712	.	+	.	Parent=Os11t0432400-02
Chr11	irgsp1_rep	CDS	13941713	13941862	.	+	0	Parent=Os11t0432400-02
Chr11	irgsp1_rep	CDS	13942812	13942895	.	+	0	Parent=Os11t0432400-02
Chr11	irgsp1_rep	CDS	13943158	13943219	.	+	0	Parent=Os11t0432400-02
Chr11	irgsp1_rep	CDS	13944071	13944432	.	+	1	Parent=Os11t0432400-02
Chr11	irgsp1_rep	CDS	13944853	13945067	.	+	2	Parent=Os11t0432400-02
Chr11	irgsp1_rep	CDS	13945161	13945217	.	+	0	Parent=Os11t0432400-02
Chr11	irgsp1_rep	three_prime_UTR	13945218	13945493	.	+	.	Parent=Os11t0432400-02
Chr11	irgsp1_rep	mRNA	13956435	13964425	.	+	.	ID=Os11t0432600-01;Name=Os11t0432600-01;Locus_id=Os11g0432600;Note=Similar to Beta-keto acyl reductase (Fragment).;Transcript_evidence=AK059916 (DDBJ%2C Best hit);ORF_evidence=O24479 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);NIAS_FLcDNA=006-209-E12;Expression=AK059916;TENOR=Os11t0432600-01;KEGG=Os11t0432600-01 (EC:1.1.1.-)
Chr11	irgsp1_rep	five_prime_UTR	13956435	13956472	.	+	.	Parent=Os11t0432600-01
Chr11	irgsp1_rep	CDS	13956473	13957158	.	+	0	Parent=Os11t0432600-01
Chr11	irgsp1_rep	CDS	13962262	13962331	.	+	1	Parent=Os11t0432600-01
Chr11	irgsp1_rep	CDS	13963887	13964150	.	+	0	Parent=Os11t0432600-01
Chr11	irgsp1_rep	three_prime_UTR	13964151	13964425	.	+	.	Parent=Os11t0432600-01
Chr11	irgsp1_rep	mRNA	13956850	13964059	.	-	.	ID=Os11t0432650-00;Name=Os11t0432650-00;Locus_id=Os11g0432650;Note=Non-protein coding transcript.;Transcript_evidence=BT019228 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0432650-00
Chr11	irgsp1_rep	exon	13963831	13964059	.	-	.	Parent=Os11t0432650-00
Chr11	irgsp1_rep	exon	13956850	13957173	.	-	.	Parent=Os11t0432650-00
Chr11	irgsp1_rep	mRNA	13969460	13971406	.	-	.	ID=Os11t0432800-01;Name=Os11t0432800-01;Locus_id=Os11g0432800;Note=Similar to OSIGBa0153E02-OSIGBa0093I20.13 protein.;Transcript_evidence=AK107478 (DDBJ%2C Best hit);ORF_evidence=Q01HR2 (UniProt);NIAS_FLcDNA=002-129-B11;TENOR=Os11t0432800-01;KEGG=Os11t0432800-01
Chr11	irgsp1_rep	five_prime_UTR	13971244	13971406	.	-	.	Parent=Os11t0432800-01
Chr11	irgsp1_rep	CDS	13970644	13971243	.	-	0	Parent=Os11t0432800-01
Chr11	irgsp1_rep	CDS	13970499	13970555	.	-	0	Parent=Os11t0432800-01
Chr11	irgsp1_rep	three_prime_UTR	13970457	13970498	.	-	.	Parent=Os11t0432800-01
Chr11	irgsp1_rep	three_prime_UTR	13970294	13970371	.	-	.	Parent=Os11t0432800-01
Chr11	irgsp1_rep	three_prime_UTR	13969460	13970042	.	-	.	Parent=Os11t0432800-01
Chr11	irgsp1_rep	mRNA	13971704	13979647	.	-	.	ID=Os11t0432900-01;Name=Os11t0432900-01;Locus_id=Os11g0432900;CGSNL Gene Symbol=SCP56;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 56;Oryzabase Gene Symbol Synonym(s)=OsSCP56;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 56;Note=Peptidase S10%2C serine carboxypeptidase family protein.;Transcript_evidence=AK069378 (DDBJ%2C Best hit);ORF_evidence=Q53PA1 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=J023012E22;Oryzabase=19232;Expression=AK069378;TENOR=Os11t0432900-01;KEGG=Os11t0432900-01 (EC:3.4.16.5)
Chr11	irgsp1_rep	five_prime_UTR	13979597	13979647	.	-	.	Parent=Os11t0432900-01
Chr11	irgsp1_rep	CDS	13979418	13979596	.	-	0	Parent=Os11t0432900-01
Chr11	irgsp1_rep	CDS	13979169	13979314	.	-	1	Parent=Os11t0432900-01
Chr11	irgsp1_rep	CDS	13978903	13979102	.	-	2	Parent=Os11t0432900-01
Chr11	irgsp1_rep	CDS	13978687	13978789	.	-	0	Parent=Os11t0432900-01
Chr11	irgsp1_rep	CDS	13978559	13978596	.	-	2	Parent=Os11t0432900-01
Chr11	irgsp1_rep	CDS	13978384	13978485	.	-	0	Parent=Os11t0432900-01
Chr11	irgsp1_rep	CDS	13978183	13978266	.	-	0	Parent=Os11t0432900-01
Chr11	irgsp1_rep	CDS	13974588	13974737	.	-	0	Parent=Os11t0432900-01
Chr11	irgsp1_rep	CDS	13973285	13973356	.	-	0	Parent=Os11t0432900-01
Chr11	irgsp1_rep	CDS	13973060	13973181	.	-	0	Parent=Os11t0432900-01
Chr11	irgsp1_rep	CDS	13972631	13972744	.	-	1	Parent=Os11t0432900-01
Chr11	irgsp1_rep	CDS	13972459	13972504	.	-	1	Parent=Os11t0432900-01
Chr11	irgsp1_rep	CDS	13971947	13972030	.	-	0	Parent=Os11t0432900-01
Chr11	irgsp1_rep	three_prime_UTR	13971704	13971946	.	-	.	Parent=Os11t0432900-01
Chr11	irgsp1_rep	mRNA	13971700	13974697	.	-	.	ID=Os11t0432900-02;Name=Os11t0432900-02;Locus_id=Os11g0432900;CGSNL Gene Symbol=SCP56;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 56;Oryzabase Gene Symbol Synonym(s)=OsSCP56;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 56;Note=Similar to Serine carboxypeptidase.;Transcript_evidence=AK059355 (DDBJ%2C Best hit);ORF_evidence=Q53PA1 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=001-026-D05;Oryzabase=19232;Expression=AK059355;TENOR=Os11t0432900-02;KEGG=Os11t0432900-02
Chr11	irgsp1_rep	five_prime_UTR	13974696	13974697	.	-	.	Parent=Os11t0432900-02
Chr11	irgsp1_rep	CDS	13974588	13974695	.	-	0	Parent=Os11t0432900-02
Chr11	irgsp1_rep	CDS	13973285	13973356	.	-	0	Parent=Os11t0432900-02
Chr11	irgsp1_rep	CDS	13973060	13973181	.	-	0	Parent=Os11t0432900-02
Chr11	irgsp1_rep	CDS	13972631	13972744	.	-	1	Parent=Os11t0432900-02
Chr11	irgsp1_rep	CDS	13972459	13972504	.	-	1	Parent=Os11t0432900-02
Chr11	irgsp1_rep	CDS	13971947	13972030	.	-	0	Parent=Os11t0432900-02
Chr11	irgsp1_rep	three_prime_UTR	13971700	13971946	.	-	.	Parent=Os11t0432900-02
Chr11	irgsp1_rep	mRNA	13986611	13988517	.	+	.	ID=Os11t0433101-00;Name=Os11t0433101-00;Locus_id=Os11g0433101;Oryzabase Gene Symbol Synonym(s)=PPR;Oryzabase Gene Name Synonym(s)=Pentatricopeptide repeat (PPR) protein;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK362024 (DDBJ);ORF_evidence=NP_001176512.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);Oryzabase=22513;TENOR=Os11t0433101-00
Chr11	irgsp1_rep	CDS	13986611	13988479	.	+	0	Parent=Os11t0433101-00
Chr11	irgsp1_rep	three_prime_UTR	13988480	13988517	.	+	.	Parent=Os11t0433101-00
Chr11	irgsp1_rep	mRNA	13996555	14007088	.	+	.	ID=Os11t0433200-01;Name=Os11t0433200-01;Locus_id=Os11g0433200;Note=Protease-associated domain%2C PA domain containing protein.;Transcript_evidence=AK067867 (DDBJ%2C Best hit);ORF_evidence=Q53P98 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Protease-associated domain%2C PA (IPR003137),Peptidase A22B%2C signal peptide peptidase (IPR007369);NIAS_FLcDNA=J013124C21;TENOR=Os11t0433200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	13996555	13996628	.	+	.	Parent=Os11t0433200-01
Chr11	irgsp1_rep	CDS	13996629	13996778	.	+	0	Parent=Os11t0433200-01
Chr11	irgsp1_rep	CDS	13999003	13999161	.	+	0	Parent=Os11t0433200-01
Chr11	irgsp1_rep	CDS	13999259	13999370	.	+	0	Parent=Os11t0433200-01
Chr11	irgsp1_rep	CDS	13999455	13999574	.	+	2	Parent=Os11t0433200-01
Chr11	irgsp1_rep	CDS	14000702	14000709	.	+	2	Parent=Os11t0433200-01
Chr11	irgsp1_rep	three_prime_UTR	14000710	14001331	.	+	.	Parent=Os11t0433200-01
Chr11	irgsp1_rep	three_prime_UTR	14001966	14002142	.	+	.	Parent=Os11t0433200-01
Chr11	irgsp1_rep	three_prime_UTR	14002309	14002343	.	+	.	Parent=Os11t0433200-01
Chr11	irgsp1_rep	three_prime_UTR	14002437	14002593	.	+	.	Parent=Os11t0433200-01
Chr11	irgsp1_rep	three_prime_UTR	14003399	14003452	.	+	.	Parent=Os11t0433200-01
Chr11	irgsp1_rep	three_prime_UTR	14003546	14003638	.	+	.	Parent=Os11t0433200-01
Chr11	irgsp1_rep	three_prime_UTR	14004013	14004152	.	+	.	Parent=Os11t0433200-01
Chr11	irgsp1_rep	three_prime_UTR	14005256	14005326	.	+	.	Parent=Os11t0433200-01
Chr11	irgsp1_rep	three_prime_UTR	14006479	14006562	.	+	.	Parent=Os11t0433200-01
Chr11	irgsp1_rep	three_prime_UTR	14006677	14007088	.	+	.	Parent=Os11t0433200-01
Chr11	irgsp1_rep	mRNA	13999089	14007417	.	+	.	ID=Os11t0433200-02;Name=Os11t0433200-02;Locus_id=Os11g0433200;Note=Similar to predicted protein.;Transcript_evidence=AK100614 (DDBJ%2C Best hit);ORF_evidence=XP_002881886.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Protease-associated domain%2C PA (IPR003137),Peptidase A22%2C presenilin signal peptide (IPR006639),Peptidase A22B%2C signal peptide peptidase (IPR007369);NIAS_FLcDNA=J023108A15;Expression=AK100614;TENOR=Os11t0433200-02;KEGG=Os11t0433200-02
Chr11	irgsp1_rep	five_prime_UTR	13999089	13999089	.	+	.	Parent=Os11t0433200-02
Chr11	irgsp1_rep	CDS	13999090	13999161	.	+	0	Parent=Os11t0433200-02
Chr11	irgsp1_rep	CDS	13999259	13999370	.	+	0	Parent=Os11t0433200-02
Chr11	irgsp1_rep	CDS	13999455	13999574	.	+	2	Parent=Os11t0433200-02
Chr11	irgsp1_rep	CDS	14001174	14001331	.	+	2	Parent=Os11t0433200-02
Chr11	irgsp1_rep	CDS	14001966	14002142	.	+	0	Parent=Os11t0433200-02
Chr11	irgsp1_rep	CDS	14002309	14002343	.	+	0	Parent=Os11t0433200-02
Chr11	irgsp1_rep	CDS	14002437	14002593	.	+	1	Parent=Os11t0433200-02
Chr11	irgsp1_rep	CDS	14003399	14003452	.	+	0	Parent=Os11t0433200-02
Chr11	irgsp1_rep	CDS	14003546	14003638	.	+	0	Parent=Os11t0433200-02
Chr11	irgsp1_rep	CDS	14004013	14004152	.	+	0	Parent=Os11t0433200-02
Chr11	irgsp1_rep	CDS	14005256	14005326	.	+	1	Parent=Os11t0433200-02
Chr11	irgsp1_rep	CDS	14006479	14006562	.	+	2	Parent=Os11t0433200-02
Chr11	irgsp1_rep	CDS	14006677	14006771	.	+	2	Parent=Os11t0433200-02
Chr11	irgsp1_rep	three_prime_UTR	14006772	14006834	.	+	.	Parent=Os11t0433200-02
Chr11	irgsp1_rep	three_prime_UTR	14007034	14007417	.	+	.	Parent=Os11t0433200-02
Chr11	irgsp1_rep	mRNA	14018013	14022442	.	+	.	ID=Os11t0433500-01;Name=Os11t0433500-01;Locus_id=Os11g0433500;Oryzabase Gene Symbol Synonym(s)=Sec23c;Oryzabase Gene Name Synonym(s)=SEC23 protein;Note=Similar to Protein transport protein Sec23A (SEC23-related protein A).;Transcript_evidence=AK067849 (DDBJ%2C Best hit);ORF_evidence=O23275 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888),Cellular Component: COPII vesicle coat (GO:0030127);InterPro=Sec23/Sec24%2C helical domain (IPR006900),Gelsolin domain (IPR007123),Sec23/Sec24 beta-sandwich (IPR012990);NIAS_FLcDNA=J013122G04;Oryzabase=17727;Expression=AK067849;TENOR=Os11t0433500-01;KEGG=Os11t0433500-01
Chr11	irgsp1_rep	five_prime_UTR	14018013	14018014	.	+	.	Parent=Os11t0433500-01
Chr11	irgsp1_rep	CDS	14018015	14018059	.	+	0	Parent=Os11t0433500-01
Chr11	irgsp1_rep	CDS	14018156	14018328	.	+	0	Parent=Os11t0433500-01
Chr11	irgsp1_rep	CDS	14018407	14018488	.	+	1	Parent=Os11t0433500-01
Chr11	irgsp1_rep	CDS	14018874	14018951	.	+	0	Parent=Os11t0433500-01
Chr11	irgsp1_rep	CDS	14019951	14020112	.	+	0	Parent=Os11t0433500-01
Chr11	irgsp1_rep	CDS	14020192	14020455	.	+	0	Parent=Os11t0433500-01
Chr11	irgsp1_rep	CDS	14021190	14021294	.	+	0	Parent=Os11t0433500-01
Chr11	irgsp1_rep	CDS	14022022	14022168	.	+	0	Parent=Os11t0433500-01
Chr11	irgsp1_rep	three_prime_UTR	14022169	14022442	.	+	.	Parent=Os11t0433500-01
Chr11	irgsp1_rep	mRNA	14028186	14029896	.	+	.	ID=Os11t0433600-01;Name=Os11t0433600-01;Locus_id=Os11g0433600;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK064185 (DDBJ%2C Best hit);ORF_evidence=Q53NS3 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-104-B11;Expression=AK064185;TENOR=Os11t0433600-01;KEGG=Os11t0433600-01
Chr11	irgsp1_rep	five_prime_UTR	14028186	14028186	.	+	.	Parent=Os11t0433600-01
Chr11	irgsp1_rep	CDS	14028187	14029650	.	+	0	Parent=Os11t0433600-01
Chr11	irgsp1_rep	three_prime_UTR	14029651	14029896	.	+	.	Parent=Os11t0433600-01
Chr11	irgsp1_rep	mRNA	14038904	14042499	.	+	.	ID=Os11t0433800-01;Name=Os11t0433800-01;Locus_id=Os11g0433800;Note=Protein of unknown function DUF635 family protein.;Transcript_evidence=AK103436 (DDBJ%2C Best hit);ORF_evidence=Q8GVY1 (UniProt);GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Putative harbinger transposase-derived nuclease (IPR006912);NIAS_FLcDNA=J033129C03;Expression=AK103436;TENOR=Os11t0433800-01;KEGG=Os11t0433800-01
Chr11	irgsp1_rep	five_prime_UTR	14038904	14039348	.	+	.	Parent=Os11t0433800-01
Chr11	irgsp1_rep	five_prime_UTR	14040234	14040235	.	+	.	Parent=Os11t0433800-01
Chr11	irgsp1_rep	CDS	14040236	14041600	.	+	0	Parent=Os11t0433800-01
Chr11	irgsp1_rep	three_prime_UTR	14041601	14041621	.	+	.	Parent=Os11t0433800-01
Chr11	irgsp1_rep	three_prime_UTR	14042221	14042499	.	+	.	Parent=Os11t0433800-01
Chr11	irgsp1_rep	mRNA	14044209	14045644	.	+	.	ID=Os11t0433900-01;Name=Os11t0433900-01;Locus_id=Os11g0433900;CGSNL Gene Symbol=RPL38;CGSNL Gene Name=RIBOSOMAL PROTEIN L38;Oryzabase Gene Symbol Synonym(s)=OsRPL38;Oryzabase Gene Name Synonym(s)=ribosomal protein  L38%2C ribosomal protein large subunit 38;Note=Similar to 60S ribosomal protein L38.;Transcript_evidence=AK059679 (DDBJ%2C Best hit);ORF_evidence=B6SIV4 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L38e (IPR002675);NIAS_FLcDNA=001-031-H04;Oryzabase=22207;TENOR=Os11t0433900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	14044209	14044293	.	+	.	Parent=Os11t0433900-01
Chr11	irgsp1_rep	CDS	14044294	14044296	.	+	0	Parent=Os11t0433900-01
Chr11	irgsp1_rep	CDS	14044389	14044572	.	+	0	Parent=Os11t0433900-01
Chr11	irgsp1_rep	CDS	14045431	14045453	.	+	2	Parent=Os11t0433900-01
Chr11	irgsp1_rep	three_prime_UTR	14045454	14045644	.	+	.	Parent=Os11t0433900-01
Chr11	irgsp1_rep	mRNA	14048550	14052484	.	-	.	ID=Os11t0434000-01;Name=Os11t0434000-01;Locus_id=Os11g0434000;Note=HAD-superfamily phosphatase%2C subfamily IIIC domain containing protein.;Transcript_evidence=AK111457 (DDBJ%2C Best hit);ORF_evidence=B6TR45 (UniProt);GO=Molecular Function: phosphatase activity (GO:0016791);InterPro=HAD-superfamily phosphatase%2C subfamily IIIC (IPR010033),Magnesium-dependent phosphatase-1%2C eukaryotic/arcaheal type (IPR010036),HAD-like domain (IPR023214),Magnesium-dependent phosphatase-1%2C eukaryotic type (IPR024734);NIAS_FLcDNA=002-183-C07;TENOR=Os11t0434000-01
Chr11	irgsp1_rep	five_prime_UTR	14052383	14052484	.	-	.	Parent=Os11t0434000-01
Chr11	irgsp1_rep	CDS	14052177	14052382	.	-	0	Parent=Os11t0434000-01
Chr11	irgsp1_rep	CDS	14049453	14049627	.	-	1	Parent=Os11t0434000-01
Chr11	irgsp1_rep	CDS	14049088	14049204	.	-	0	Parent=Os11t0434000-01
Chr11	irgsp1_rep	CDS	14048656	14048823	.	-	0	Parent=Os11t0434000-01
Chr11	irgsp1_rep	three_prime_UTR	14048550	14048655	.	-	.	Parent=Os11t0434000-01
Chr11	irgsp1_rep	mRNA	14048564	14052450	.	-	.	ID=Os11t0434000-02;Name=Os11t0434000-02;Locus_id=Os11g0434000;Note=HAD-superfamily phosphatase%2C subfamily IIIC domain containing protein.;Transcript_evidence=AK073814 (DDBJ%2C Best hit);ORF_evidence=B6TR45 (UniProt);GO=Molecular Function: phosphatase activity (GO:0016791);InterPro=HAD-superfamily phosphatase%2C subfamily IIIC (IPR010033),Magnesium-dependent phosphatase-1%2C eukaryotic/arcaheal type (IPR010036),HAD-like domain (IPR023214),Magnesium-dependent phosphatase-1%2C eukaryotic type (IPR024734);NIAS_FLcDNA=J033068D13;TENOR=Os11t0434000-02
Chr11	irgsp1_rep	five_prime_UTR	14052383	14052450	.	-	.	Parent=Os11t0434000-02
Chr11	irgsp1_rep	CDS	14052177	14052382	.	-	0	Parent=Os11t0434000-02
Chr11	irgsp1_rep	CDS	14049453	14049627	.	-	1	Parent=Os11t0434000-02
Chr11	irgsp1_rep	CDS	14049088	14049204	.	-	0	Parent=Os11t0434000-02
Chr11	irgsp1_rep	CDS	14048656	14048823	.	-	0	Parent=Os11t0434000-02
Chr11	irgsp1_rep	three_prime_UTR	14048564	14048655	.	-	.	Parent=Os11t0434000-02
Chr11	irgsp1_rep	mRNA	14069950	14071252	.	-	.	ID=Os11t0434400-00;Name=Os11t0434400-00;Locus_id=Os11g0434400;Note=Ankyrin repeat domain containing protein.;Transcript_evidence=AK363479 (DDBJ);ORF_evidence=A3CAY2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);TENOR=Os11t0434400-00
Chr11	irgsp1_rep	five_prime_UTR	14071249	14071252	.	-	.	Parent=Os11t0434400-00
Chr11	irgsp1_rep	CDS	14070724	14071248	.	-	0	Parent=Os11t0434400-00
Chr11	irgsp1_rep	CDS	14069950	14070645	.	-	0	Parent=Os11t0434400-00
Chr11	irgsp1_rep	mRNA	14080896	14081399	.	-	.	ID=Os11t0434800-01;Name=Os11t0434800-01;Locus_id=Os11g0434800;Note=Conserved hypothetical protein.;Transcript_evidence=AK062908 (DDBJ%2C Best hit);ORF_evidence=NP_001055306.1 (RefSeq);NIAS_FLcDNA=001-108-F12;TENOR=Os11t0434800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	14081399	14081399	.	-	.	Parent=Os11t0434800-01
Chr11	irgsp1_rep	CDS	14081254	14081398	.	-	0	Parent=Os11t0434800-01
Chr11	irgsp1_rep	CDS	14080896	14081192	.	-	2	Parent=Os11t0434800-01
Chr11	irgsp1_rep	mRNA	14085190	14086514	.	-	.	ID=Os11t0434850-00;Name=Os11t0434850-00;Locus_id=Os11g0434850;Note=Ankyrin repeat domain containing protein.;Transcript_evidence=AK363479 (DDBJ);ORF_evidence=A2ZDW5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);TENOR=Os11t0434850-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	14086511	14086514	.	-	.	Parent=Os11t0434850-00
Chr11	irgsp1_rep	CDS	14085986	14086510	.	-	0	Parent=Os11t0434850-00
Chr11	irgsp1_rep	CDS	14085190	14085879	.	-	0	Parent=Os11t0434850-00
Chr11	irgsp1_rep	mRNA	14097484	14098783	.	-	.	ID=Os11t0435100-00;Name=Os11t0435100-00;Locus_id=Os11g0435100;Note=Ankyrin repeat domain containing protein.;Transcript_evidence=AK363479 (DDBJ);ORF_evidence=A2ZDW5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);TENOR=Os11t0435100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	14098780	14098783	.	-	.	Parent=Os11t0435100-00
Chr11	irgsp1_rep	CDS	14098255	14098779	.	-	0	Parent=Os11t0435100-00
Chr11	irgsp1_rep	CDS	14098129	14098161	.	-	0	Parent=Os11t0435100-00
Chr11	irgsp1_rep	three_prime_UTR	14097484	14098128	.	-	.	Parent=Os11t0435100-00
Chr11	irgsp1_rep	mRNA	14117984	14121700	.	-	.	ID=Os11t0435300-00;Name=Os11t0435300-00;Locus_id=Os11g0435300;Note=Ankyrin repeat domain containing protein.;Transcript_evidence=AK363479 (DDBJ);ORF_evidence=Q53LM6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);TENOR=Os11t0435300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	14121597	14121700	.	-	.	Parent=Os11t0435300-00
Chr11	irgsp1_rep	CDS	14121554	14121596	.	-	0	Parent=Os11t0435300-00
Chr11	irgsp1_rep	CDS	14120850	14121362	.	-	2	Parent=Os11t0435300-00
Chr11	irgsp1_rep	CDS	14118777	14119308	.	-	2	Parent=Os11t0435300-00
Chr11	irgsp1_rep	CDS	14117984	14118671	.	-	1	Parent=Os11t0435300-00
Chr11	irgsp1_rep	mRNA	14127344	14127769	.	-	.	ID=Os11t0435301-00;Name=Os11t0435301-00;Locus_id=Os11g0435301;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os11t0435301-00;KEGG=Os11t0435301-00
Chr11	irgsp1_rep	CDS	14127344	14127769	.	-	0	Parent=Os11t0435301-00
Chr11	irgsp1_rep	mRNA	14130436	14132249	.	+	.	ID=Os11t0435400-01;Name=Os11t0435400-01;Locus_id=Os11g0435400;Note=Conserved hypothetical protein.;Transcript_evidence=AK109799 (DDBJ%2C Best hit);ORF_evidence=Q7XSL7 (UniProt);NIAS_FLcDNA=002-147-F02;Expression=AK109799;TENOR=Os11t0435400-01;KEGG=Os11t0435400-01
Chr11	irgsp1_rep	five_prime_UTR	14130436	14130565	.	+	.	Parent=Os11t0435400-01
Chr11	irgsp1_rep	five_prime_UTR	14130720	14131304	.	+	.	Parent=Os11t0435400-01
Chr11	irgsp1_rep	CDS	14131305	14131691	.	+	0	Parent=Os11t0435400-01
Chr11	irgsp1_rep	three_prime_UTR	14131692	14132249	.	+	.	Parent=Os11t0435400-01
Chr11	irgsp1_rep	mRNA	14134259	14136888	.	-	.	ID=Os11t0435500-01;Name=Os11t0435500-01;Locus_id=Os11g0435500;Note=Similar to alkaline alpha galactosidase 3.;Transcript_evidence=AK069963 (DDBJ%2C Best hit);ORF_evidence=NP_001105775.1 (RefSeq);NIAS_FLcDNA=J023037J05;TENOR=Os11t0435500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	14136656	14136888	.	-	.	Parent=Os11t0435500-01
Chr11	irgsp1_rep	CDS	14136386	14136655	.	-	0	Parent=Os11t0435500-01
Chr11	irgsp1_rep	three_prime_UTR	14135668	14136385	.	-	.	Parent=Os11t0435500-01
Chr11	irgsp1_rep	three_prime_UTR	14134259	14135548	.	-	.	Parent=Os11t0435500-01
Chr11	irgsp1_rep	mRNA	14164218	14169892	.	-	.	ID=Os11t0435800-00;Name=Os11t0435800-00;Locus_id=Os11g0435800;Oryzabase Gene Symbol Synonym(s)=OsSTA258;Oryzabase Gene Name Synonym(s)=Ankyrin%2C Ankyrin repeat domain containing protein;Note=Ankyrin repeat domain containing protein.;Transcript_evidence=AK363479 (DDBJ);ORF_evidence=Q53LM6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);Oryzabase=19289;TENOR=Os11t0435800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	14169808	14169892	.	-	.	Parent=Os11t0435800-00
Chr11	irgsp1_rep	CDS	14169788	14169807	.	-	0	Parent=Os11t0435800-00
Chr11	irgsp1_rep	CDS	14169091	14169629	.	-	1	Parent=Os11t0435800-00
Chr11	irgsp1_rep	CDS	14165020	14165546	.	-	2	Parent=Os11t0435800-00
Chr11	irgsp1_rep	CDS	14164218	14164913	.	-	0	Parent=Os11t0435800-00
Chr11	irgsp1_rep	mRNA	14161909	14162140	.	+	.	ID=Os11t0435900-01;Name=Os11t0435900-01;Locus_id=Os11g0435900;Note=Non-protein coding transcript.;Transcript_evidence=AK060626 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-026-G09;TENOR=Os11t0435900-01
Chr11	irgsp1_rep	exon	14161909	14162140	.	+	.	Parent=Os11t0435900-01
Chr11	irgsp1_rep	mRNA	14189093	14201379	.	+	.	ID=Os11t0436450-00;Name=Os11t0436450-00;Locus_id=Os11g0436450;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0004o19 (Wheat FLcDNA);ORF_evidence=Q53LN4 (UniProt);TENOR=Os11t0436450-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	14189093	14189677	.	+	0	Parent=Os11t0436450-00
Chr11	irgsp1_rep	CDS	14200988	14201215	.	+	0	Parent=Os11t0436450-00
Chr11	irgsp1_rep	three_prime_UTR	14201216	14201379	.	+	.	Parent=Os11t0436450-00
Chr11	irgsp1_rep	mRNA	14203011	14204045	.	+	.	ID=Os11t0436500-00;Name=Os11t0436500-00;Locus_id=Os11g0436500;Note=Protein of unknown function DUF295 domain containing protein.;Transcript_evidence=tplb0004o19 (Wheat FLcDNA);ORF_evidence=Q53LN4 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174);TENOR=Os11t0436500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	14203011	14204045	.	+	0	Parent=Os11t0436500-00
Chr11	irgsp1_rep	mRNA	14267738	14268964	.	+	.	ID=Os11t0437600-01;Name=Os11t0437600-01;Locus_id=Os11g0437600;Note=Protein of unknown function DUF506%2C plant family protein.;Transcript_evidence=AK241582 (DDBJ%2C Best hit);ORF_evidence=NP_001176518.1 (RefSeq);InterPro=Protein of unknown function DUF506%2C plant (IPR006502);NIAS_FLcDNA=J065181M02;TENOR=Os11t0437600-01;KEGG=Os11t0437600-01
Chr11	irgsp1_rep	five_prime_UTR	14267738	14267769	.	+	.	Parent=Os11t0437600-01
Chr11	irgsp1_rep	CDS	14267770	14268690	.	+	0	Parent=Os11t0437600-01
Chr11	irgsp1_rep	three_prime_UTR	14268691	14268964	.	+	.	Parent=Os11t0437600-01
Chr11	irgsp1_rep	mRNA	14286671	14287154	.	+	.	ID=Os11t0437800-01;Name=Os11t0437800-01;Locus_id=Os11g0437800;Note=2OG-Fe(II) oxygenase domain containing protein.;Transcript_evidence=AK240896 (DDBJ%2C Best hit);ORF_evidence=Q53JP2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=J065032I18;TENOR=Os11t0437800-01;KEGG=Os11t0437800-01
Chr11	irgsp1_rep	five_prime_UTR	14286671	14286671	.	+	.	Parent=Os11t0437800-01
Chr11	irgsp1_rep	CDS	14286672	14286977	.	+	0	Parent=Os11t0437800-01
Chr11	irgsp1_rep	three_prime_UTR	14286978	14287154	.	+	.	Parent=Os11t0437800-01
Chr11	irgsp1_rep	mRNA	14299804	14303077	.	+	.	ID=Os11t0438000-01;Name=Os11t0438000-01;Locus_id=Os11g0438000;Note=Hypothetical conserved gene.;Transcript_evidence=AK071696 (DDBJ%2C Best hit);ORF_evidence=B9G861 (UniProt);NIAS_FLcDNA=J023109P16;Expression=AK071696;TENOR=Os11t0438000-01;KEGG=Os11t0438000-01
Chr11	irgsp1_rep	five_prime_UTR	14299804	14299806	.	+	.	Parent=Os11t0438000-01
Chr11	irgsp1_rep	CDS	14299807	14300187	.	+	0	Parent=Os11t0438000-01
Chr11	irgsp1_rep	three_prime_UTR	14300188	14301448	.	+	.	Parent=Os11t0438000-01
Chr11	irgsp1_rep	three_prime_UTR	14301539	14301637	.	+	.	Parent=Os11t0438000-01
Chr11	irgsp1_rep	three_prime_UTR	14301763	14302151	.	+	.	Parent=Os11t0438000-01
Chr11	irgsp1_rep	three_prime_UTR	14302268	14302492	.	+	.	Parent=Os11t0438000-01
Chr11	irgsp1_rep	three_prime_UTR	14302738	14303077	.	+	.	Parent=Os11t0438000-01
Chr11	irgsp1_rep	mRNA	14299846	14303669	.	+	.	ID=Os11t0438000-02;Name=Os11t0438000-02;Locus_id=Os11g0438000;Note=Similar to Short chain alcohol dehydrogenase-like.;Transcript_evidence=AK073048 (DDBJ%2C Best hit);ORF_evidence=Q01LV1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033007C03;Expression=AK073048;TENOR=Os11t0438000-02;KEGG=Os11t0438000-02
Chr11	irgsp1_rep	five_prime_UTR	14299846	14301448	.	+	.	Parent=Os11t0438000-02
Chr11	irgsp1_rep	five_prime_UTR	14301539	14301637	.	+	.	Parent=Os11t0438000-02
Chr11	irgsp1_rep	five_prime_UTR	14301763	14301869	.	+	.	Parent=Os11t0438000-02
Chr11	irgsp1_rep	five_prime_UTR	14302083	14302151	.	+	.	Parent=Os11t0438000-02
Chr11	irgsp1_rep	five_prime_UTR	14302268	14303073	.	+	.	Parent=Os11t0438000-02
Chr11	irgsp1_rep	CDS	14303074	14303183	.	+	0	Parent=Os11t0438000-02
Chr11	irgsp1_rep	CDS	14303307	14303604	.	+	1	Parent=Os11t0438000-02
Chr11	irgsp1_rep	three_prime_UTR	14303605	14303669	.	+	.	Parent=Os11t0438000-02
Chr11	irgsp1_rep	mRNA	14312204	14314641	.	-	.	ID=Os11t0438400-01;Name=Os11t0438400-01;Locus_id=Os11g0438400;Note=Hypothetical conserved gene.;Transcript_evidence=AK241634 (DDBJ%2C Best hit);ORF_evidence=Q2RB42 (UniProt);NIAS_FLcDNA=J065188E03;TENOR=Os11t0438400-01;KEGG=Os11t0438400-01
Chr11	irgsp1_rep	five_prime_UTR	14314301	14314641	.	-	.	Parent=Os11t0438400-01
Chr11	irgsp1_rep	five_prime_UTR	14313809	14313848	.	-	.	Parent=Os11t0438400-01
Chr11	irgsp1_rep	CDS	14313762	14313808	.	-	0	Parent=Os11t0438400-01
Chr11	irgsp1_rep	CDS	14312840	14313668	.	-	1	Parent=Os11t0438400-01
Chr11	irgsp1_rep	three_prime_UTR	14312732	14312839	.	-	.	Parent=Os11t0438400-01
Chr11	irgsp1_rep	three_prime_UTR	14312204	14312643	.	-	.	Parent=Os11t0438400-01
Chr11	irgsp1_rep	mRNA	14321368	14325263	.	+	.	ID=Os11t0438500-01;Name=Os11t0438500-01;Locus_id=Os11g0438500;Note=Non-protein coding transcript.;Transcript_evidence=AK241803 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065208O15;TENOR=Os11t0438500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	exon	14321368	14321531	.	+	.	Parent=Os11t0438500-01
Chr11	irgsp1_rep	exon	14321904	14321967	.	+	.	Parent=Os11t0438500-01
Chr11	irgsp1_rep	exon	14322821	14322960	.	+	.	Parent=Os11t0438500-01
Chr11	irgsp1_rep	exon	14323040	14325263	.	+	.	Parent=Os11t0438500-01
Chr11	irgsp1_rep	mRNA	14329456	14329806	.	+	.	ID=Os11t0438600-00;Name=Os11t0438600-00;Locus_id=Os11g0438600;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q53JN0 (UniProt);TENOR=Os11t0438600-00;KEGG=Os11t0438600-00
Chr11	irgsp1_rep	CDS	14329456	14329806	.	+	0	Parent=Os11t0438600-00
Chr11	irgsp1_rep	mRNA	14330653	14335278	.	+	.	ID=Os11t0438700-01;Name=Os11t0438700-01;Locus_id=Os11g0438700;Note=Similar to Tropinone reductase-I (EC 1.1.1.206) (TR-I) (Tropine dehydrogenase).;Transcript_evidence=AK073524 (DDBJ%2C Best hit);ORF_evidence=NP_001148247.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);NIAS_FLcDNA=J033046I10;Expression=AK073524;TENOR=Os11t0438700-01;KEGG=Os11t0438700-01 (EC:1.1.1.206)
Chr11	irgsp1_rep	five_prime_UTR	14330653	14330706	.	+	.	Parent=Os11t0438700-01
Chr11	irgsp1_rep	CDS	14330707	14330795	.	+	0	Parent=Os11t0438700-01
Chr11	irgsp1_rep	CDS	14330908	14331115	.	+	1	Parent=Os11t0438700-01
Chr11	irgsp1_rep	CDS	14331224	14331289	.	+	0	Parent=Os11t0438700-01
Chr11	irgsp1_rep	CDS	14331597	14331753	.	+	0	Parent=Os11t0438700-01
Chr11	irgsp1_rep	CDS	14334341	14334447	.	+	2	Parent=Os11t0438700-01
Chr11	irgsp1_rep	CDS	14334818	14334985	.	+	0	Parent=Os11t0438700-01
Chr11	irgsp1_rep	three_prime_UTR	14334986	14335278	.	+	.	Parent=Os11t0438700-01
Chr11	irgsp1_rep	mRNA	14330653	14336130	.	+	.	ID=Os11t0438700-02;Name=Os11t0438700-02;Locus_id=Os11g0438700;Note=Similar to Tropinone reductase-I (EC 1.1.1.206) (TR-I) (Tropine dehydrogenase).;Transcript_evidence=AK063434 (DDBJ%2C Best hit);ORF_evidence=NP_001148247.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);NIAS_FLcDNA=001-115-E03;Expression=AK063434;TENOR=Os11t0438700-02;KEGG=Os11t0438700-02 (EC:1.1.1.206)
Chr11	irgsp1_rep	five_prime_UTR	14330653	14330706	.	+	.	Parent=Os11t0438700-02
Chr11	irgsp1_rep	CDS	14330707	14330795	.	+	0	Parent=Os11t0438700-02
Chr11	irgsp1_rep	CDS	14330908	14331115	.	+	1	Parent=Os11t0438700-02
Chr11	irgsp1_rep	CDS	14331224	14331289	.	+	0	Parent=Os11t0438700-02
Chr11	irgsp1_rep	CDS	14331597	14331753	.	+	0	Parent=Os11t0438700-02
Chr11	irgsp1_rep	CDS	14334341	14334447	.	+	2	Parent=Os11t0438700-02
Chr11	irgsp1_rep	CDS	14334818	14334985	.	+	0	Parent=Os11t0438700-02
Chr11	irgsp1_rep	three_prime_UTR	14334986	14335393	.	+	.	Parent=Os11t0438700-02
Chr11	irgsp1_rep	three_prime_UTR	14335472	14336130	.	+	.	Parent=Os11t0438700-02
Chr11	irgsp1_rep	mRNA	14331119	14335284	.	+	.	ID=Os11t0438700-03;Name=Os11t0438700-03;Locus_id=Os11g0438700;Note=Hypothetical conserved gene.;Transcript_evidence=AK072298 (DDBJ%2C Best hit);ORF_evidence=Q53JM9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023016M03;Expression=AK072298;TENOR=Os11t0438700-03;KEGG=Os11t0438700-03
Chr11	irgsp1_rep	five_prime_UTR	14331119	14331217	.	+	.	Parent=Os11t0438700-03
Chr11	irgsp1_rep	CDS	14331218	14331289	.	+	0	Parent=Os11t0438700-03
Chr11	irgsp1_rep	CDS	14331597	14331920	.	+	0	Parent=Os11t0438700-03
Chr11	irgsp1_rep	three_prime_UTR	14331921	14334447	.	+	.	Parent=Os11t0438700-03
Chr11	irgsp1_rep	three_prime_UTR	14334818	14335284	.	+	.	Parent=Os11t0438700-03
Chr11	irgsp1_rep	mRNA	14366793	14366846	.	+	.	ID=Os11t0438900-00;Name=Os11t0438900-00;Locus_id=Os11g0438900;Note=Non-protein coding transcript.;Transcript_evidence=EU942867 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0438900-00
Chr11	irgsp1_rep	exon	14366793	14366846	.	+	.	Parent=Os11t0438900-00
Chr11	irgsp1_rep	mRNA	14368273	14369253	.	+	.	ID=Os11t0439100-00;Name=Os11t0439100-00;Locus_id=Os11g0439100;Note=Similar to OSIGBa0135A16.7 protein.;Transcript_evidence=CT837956 (DDBJ%2C Best hit);ORF_evidence=Q53KL8 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),NAD(P)-binding domain (IPR016040);TENOR=Os11t0439100-00;KEGG=Os11t0439100-00
Chr11	irgsp1_rep	five_prime_UTR	14368273	14368338	.	+	.	Parent=Os11t0439100-00
Chr11	irgsp1_rep	CDS	14368339	14368421	.	+	0	Parent=Os11t0439100-00
Chr11	irgsp1_rep	CDS	14368528	14368723	.	+	1	Parent=Os11t0439100-00
Chr11	irgsp1_rep	three_prime_UTR	14368724	14369253	.	+	.	Parent=Os11t0439100-00
Chr11	irgsp1_rep	mRNA	14379808	14383367	.	+	.	ID=Os11t0439300-01;Name=Os11t0439300-01;Locus_id=Os11g0439300;Note=Hypothetical protein.;Transcript_evidence=AK288620 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090054E12;TENOR=Os11t0439300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	14379808	14381308	.	+	.	Parent=Os11t0439300-01
Chr11	irgsp1_rep	CDS	14381309	14381644	.	+	0	Parent=Os11t0439300-01
Chr11	irgsp1_rep	three_prime_UTR	14381645	14383367	.	+	.	Parent=Os11t0439300-01
Chr11	irgsp1_rep	mRNA	14379819	14382254	.	+	.	ID=Os11t0439300-02;Name=Os11t0439300-02;Locus_id=Os11g0439300;Note=Hypothetical protein.;Transcript_evidence=AK068470 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013156K06;Expression=AK068470;TENOR=Os11t0439300-02;KEGG=Os11t0439300-02
Chr11	irgsp1_rep	five_prime_UTR	14379819	14380935	.	+	.	Parent=Os11t0439300-02
Chr11	irgsp1_rep	CDS	14380936	14381032	.	+	0	Parent=Os11t0439300-02
Chr11	irgsp1_rep	CDS	14381442	14381644	.	+	2	Parent=Os11t0439300-02
Chr11	irgsp1_rep	three_prime_UTR	14381645	14381682	.	+	.	Parent=Os11t0439300-02
Chr11	irgsp1_rep	three_prime_UTR	14381993	14382254	.	+	.	Parent=Os11t0439300-02
Chr11	irgsp1_rep	mRNA	14390405	14398122	.	-	.	ID=Os11t0439600-01;Name=Os11t0439600-01;Locus_id=Os11g0439600;Note=Similar to Nod factor binding lectin-nucleotide phosphohydrolase.;Transcript_evidence=AK069955 (DDBJ%2C Best hit),AK104082 (DDBJ%2C Best hit),AK104429 (DDBJ%2C Best hit),AK119786 (DDBJ%2C Best hit);ORF_evidence=Q53KM8 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Nucleoside phosphatase GDA1/CD39 (IPR000407);NIAS_FLcDNA=J023036G10,001-029-C02,006-206-C10,002-173-F08;Expression=AK069955;TENOR=Os11t0439600-01;KEGG=Os11t0439600-01 (EC:3.6.1.6)
Chr11	irgsp1_rep	five_prime_UTR	14398015	14398122	.	-	.	Parent=Os11t0439600-01
Chr11	irgsp1_rep	CDS	14397694	14398014	.	-	0	Parent=Os11t0439600-01
Chr11	irgsp1_rep	CDS	14393918	14394046	.	-	0	Parent=Os11t0439600-01
Chr11	irgsp1_rep	CDS	14393769	14393825	.	-	0	Parent=Os11t0439600-01
Chr11	irgsp1_rep	CDS	14393549	14393641	.	-	0	Parent=Os11t0439600-01
Chr11	irgsp1_rep	CDS	14393231	14393436	.	-	0	Parent=Os11t0439600-01
Chr11	irgsp1_rep	CDS	14392880	14392971	.	-	1	Parent=Os11t0439600-01
Chr11	irgsp1_rep	CDS	14392157	14392555	.	-	2	Parent=Os11t0439600-01
Chr11	irgsp1_rep	CDS	14390559	14390689	.	-	2	Parent=Os11t0439600-01
Chr11	irgsp1_rep	three_prime_UTR	14390405	14390558	.	-	.	Parent=Os11t0439600-01
Chr11	irgsp1_rep	mRNA	14428631	14430579	.	-	.	ID=Os11t0440200-00;Name=Os11t0440200-00;Locus_id=Os11g0440200;Note=Similar to GDA1/CD39 family protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q53KM8 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Nucleoside phosphatase GDA1/CD39 (IPR000407);TENOR=Os11t0440200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	14430568	14430579	.	-	0	Parent=Os11t0440200-00
Chr11	irgsp1_rep	CDS	14430400	14430528	.	-	0	Parent=Os11t0440200-00
Chr11	irgsp1_rep	CDS	14430251	14430307	.	-	0	Parent=Os11t0440200-00
Chr11	irgsp1_rep	CDS	14430031	14430123	.	-	0	Parent=Os11t0440200-00
Chr11	irgsp1_rep	CDS	14429713	14429918	.	-	0	Parent=Os11t0440200-00
Chr11	irgsp1_rep	CDS	14429362	14429453	.	-	1	Parent=Os11t0440200-00
Chr11	irgsp1_rep	CDS	14428631	14429037	.	-	2	Parent=Os11t0440200-00
Chr11	irgsp1_rep	mRNA	14501180	14502016	.	-	.	ID=Os11t0440422-00;Name=Os11t0440422-00;Locus_id=Os11g0440422;Note=Calmodulin-binding protein%2C plant domain containing protein.;Transcript_evidence=AK373949 (DDBJ);ORF_evidence=Q53KG5 (UniProt);InterPro=Calmodulin-binding protein%2C plant (IPR012417);TENOR=Os11t0440422-00
Chr11	irgsp1_rep	five_prime_UTR	14501747	14502016	.	-	.	Parent=Os11t0440422-00
Chr11	irgsp1_rep	CDS	14501180	14501746	.	-	0	Parent=Os11t0440422-00
Chr11	irgsp1_rep	mRNA	14507370	14508059	.	-	.	ID=Os11t0440866-00;Name=Os11t0440866-00;Locus_id=Os11g0440866;Note=Non-protein coding transcript.;Transcript_evidence=CU861842 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os11t0440866-00
Chr11	irgsp1_rep	exon	14507370	14508059	.	-	.	Parent=Os11t0440866-00
Chr11	irgsp1_rep	mRNA	14509845	14516320	.	-	.	ID=Os11t0441500-01;Name=Os11t0441500-01;Locus_id=Os11g0441500;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK069996 (DDBJ%2C Best hit);ORF_evidence=D5MTD9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J023040B08;Expression=AK069996;TENOR=Os11t0441500-01;KEGG=Os11t0441500-01
Chr11	irgsp1_rep	five_prime_UTR	14516310	14516320	.	-	.	Parent=Os11t0441500-01
Chr11	irgsp1_rep	CDS	14515802	14516309	.	-	0	Parent=Os11t0441500-01
Chr11	irgsp1_rep	CDS	14509927	14510825	.	-	2	Parent=Os11t0441500-01
Chr11	irgsp1_rep	three_prime_UTR	14509845	14509926	.	-	.	Parent=Os11t0441500-01
Chr11	irgsp1_rep	mRNA	14516903	14517532	.	+	.	ID=Os11t0441550-00;Name=Os11t0441550-00;Locus_id=Os11g0441550;Note=Non-protein coding transcript.;Transcript_evidence=CT835679 (DDBJ%2C Secondary hit);ORF_evidence=NONE;TENOR=Os11t0441550-00
Chr11	irgsp1_rep	exon	14516903	14517532	.	+	.	Parent=Os11t0441550-00
Chr11	irgsp1_rep	mRNA	14525685	14527208	.	+	.	ID=Os11t0441900-01;Name=Os11t0441900-01;Locus_id=Os11g0441900;CGSNL Gene Symbol=RLCK326;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 326;Oryzabase Gene Symbol Synonym(s)=OsRLCK326;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 326;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK109632 (DDBJ%2C Best hit);ORF_evidence=Q01KL3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=002-138-D05;Oryzabase=18997;Expression=AK109632;TENOR=Os11t0441900-01;KEGG=Os11t0441900-01
Chr11	irgsp1_rep	five_prime_UTR	14525685	14525945	.	+	.	Parent=Os11t0441900-01
Chr11	irgsp1_rep	CDS	14525946	14527085	.	+	0	Parent=Os11t0441900-01
Chr11	irgsp1_rep	three_prime_UTR	14527086	14527208	.	+	.	Parent=Os11t0441900-01
Chr11	irgsp1_rep	mRNA	14568688	14571605	.	+	.	ID=Os11t0442380-01;Name=Os11t0442380-01;Locus_id=Os11g0442380;Note=Hypothetical gene.;Transcript_evidence=AK288970 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090085B10;TENOR=Os11t0442380-01;KEGG=Os11t0442380-01
Chr11	irgsp1_rep	five_prime_UTR	14568688	14570175	.	+	.	Parent=Os11t0442380-01
Chr11	irgsp1_rep	CDS	14570176	14570598	.	+	0	Parent=Os11t0442380-01
Chr11	irgsp1_rep	three_prime_UTR	14570599	14571605	.	+	.	Parent=Os11t0442380-01
Chr11	irgsp1_rep	mRNA	14569673	14571090	.	-	.	ID=Os11t0442500-00;Name=Os11t0442500-00;Locus_id=Os11g0442500;Note=Similar to BHLH transcription factor.;Transcript_evidence=BT064492 (DDBJ);ORF_evidence=NP_001152266.1 (RefSeq);InterPro=Helix-loop-helix DNA-binding (IPR011598);TENOR=Os11t0442500-00;KEGG=Os11t0442500-00
Chr11	irgsp1_rep	CDS	14570209	14571090	.	-	0	Parent=Os11t0442500-00
Chr11	irgsp1_rep	CDS	14570047	14570112	.	-	0	Parent=Os11t0442500-00
Chr11	irgsp1_rep	CDS	14569883	14569951	.	-	0	Parent=Os11t0442500-00
Chr11	irgsp1_rep	CDS	14569673	14569783	.	-	0	Parent=Os11t0442500-00
Chr11	irgsp1_rep	mRNA	14605584	14607289	.	+	.	ID=Os11t0442900-01;Name=Os11t0442900-01;Locus_id=Os11g0442900;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK110914 (DDBJ%2C Best hit);ORF_evidence=B8BNW0 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=002-173-C05;Expression=AK110914;TENOR=Os11t0442900-01;KEGG=Os11t0442900-01
Chr11	irgsp1_rep	five_prime_UTR	14605584	14605714	.	+	.	Parent=Os11t0442900-01
Chr11	irgsp1_rep	CDS	14605715	14607070	.	+	0	Parent=Os11t0442900-01
Chr11	irgsp1_rep	three_prime_UTR	14607071	14607289	.	+	.	Parent=Os11t0442900-01
Chr11	irgsp1_rep	mRNA	14660801	14663959	.	+	.	ID=Os11t0443700-01;Name=Os11t0443700-01;Locus_id=Os11g0443700;Note=Similar to Short chain alcohol dehydrogenase-like.;Transcript_evidence=AK108232 (DDBJ%2C Best hit);ORF_evidence=A7DY56 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);NIAS_FLcDNA=002-140-G04;Expression=AK108232;TENOR=Os11t0443700-01;KEGG=Os11t0443700-01
Chr11	irgsp1_rep	five_prime_UTR	14660801	14660852	.	+	.	Parent=Os11t0443700-01
Chr11	irgsp1_rep	CDS	14660853	14660935	.	+	0	Parent=Os11t0443700-01
Chr11	irgsp1_rep	CDS	14661049	14661256	.	+	1	Parent=Os11t0443700-01
Chr11	irgsp1_rep	CDS	14661372	14661588	.	+	0	Parent=Os11t0443700-01
Chr11	irgsp1_rep	CDS	14662159	14662265	.	+	2	Parent=Os11t0443700-01
Chr11	irgsp1_rep	CDS	14663510	14663677	.	+	0	Parent=Os11t0443700-01
Chr11	irgsp1_rep	three_prime_UTR	14663678	14663959	.	+	.	Parent=Os11t0443700-01
Chr11	irgsp1_rep	mRNA	14672877	14675385	.	-	.	ID=Os11t0444000-01;Name=Os11t0444000-01;Locus_id=Os11g0444000;Note=Similar to UDP-glucosyltransferase BX8.;Transcript_evidence=AK099588 (DDBJ%2C Best hit),AK105931 (DDBJ%2C Best hit);ORF_evidence=D5MTF7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J013043F17,001-205-B02;TENOR=Os11t0444000-01
Chr11	irgsp1_rep	five_prime_UTR	14675369	14675385	.	-	.	Parent=Os11t0444000-01
Chr11	irgsp1_rep	CDS	14674903	14675368	.	-	0	Parent=Os11t0444000-01
Chr11	irgsp1_rep	CDS	14673028	14673926	.	-	2	Parent=Os11t0444000-01
Chr11	irgsp1_rep	three_prime_UTR	14672877	14673027	.	-	.	Parent=Os11t0444000-01
Chr11	irgsp1_rep	mRNA	14687711	14688398	.	+	.	ID=Os11t0444400-01;Name=Os11t0444400-01;Locus_id=Os11g0444400;Note=Conserved hypothetical protein.;Transcript_evidence=AK062448 (DDBJ%2C Best hit);ORF_evidence=B8AZC4 (UniProt);NIAS_FLcDNA=001-103-B11;Expression=AK062448;TENOR=Os11t0444400-01;KEGG=Os11t0444400-01
Chr11	irgsp1_rep	five_prime_UTR	14687711	14687915	.	+	.	Parent=Os11t0444400-01
Chr11	irgsp1_rep	CDS	14687916	14688248	.	+	0	Parent=Os11t0444400-01
Chr11	irgsp1_rep	three_prime_UTR	14688249	14688398	.	+	.	Parent=Os11t0444400-01
Chr11	irgsp1_rep	mRNA	14705242	14706300	.	+	.	ID=Os11t0444700-01;Name=Os11t0444700-01;Locus_id=Os11g0444700;Oryzabase Gene Symbol Synonym(s)=OsPB1%2C PB1;Oryzabase Gene Name Synonym(s)=PB1 domain-containing protein;Note=Octicosapeptide/Phox/Bem1p domain containing protein.;Transcript_evidence=AK066452 (DDBJ%2C Best hit),AK104816 (DDBJ%2C Best hit);ORF_evidence=Q53KV1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Phox/Bem1p (IPR000270);NIAS_FLcDNA=J013061N18,001-040-H08;Oryzabase=20376;TENOR=Os11t0444700-01
Chr11	irgsp1_rep	five_prime_UTR	14705242	14705370	.	+	.	Parent=Os11t0444700-01
Chr11	irgsp1_rep	CDS	14705371	14705605	.	+	0	Parent=Os11t0444700-01
Chr11	irgsp1_rep	CDS	14705698	14706137	.	+	2	Parent=Os11t0444700-01
Chr11	irgsp1_rep	three_prime_UTR	14706138	14706300	.	+	.	Parent=Os11t0444700-01
Chr11	irgsp1_rep	mRNA	14713141	14714215	.	-	.	ID=Os11t0444800-01;Name=Os11t0444800-01;Locus_id=Os11g0444800;Note=Conserved hypothetical protein.;Transcript_evidence=AK061328 (DDBJ%2C Best hit);ORF_evidence=B8AUZ0 (UniProt);NIAS_FLcDNA=006-303-A02;Expression=AK061328;TENOR=Os11t0444800-01;KEGG=Os11t0444800-01
Chr11	irgsp1_rep	five_prime_UTR	14714060	14714215	.	-	.	Parent=Os11t0444800-01
Chr11	irgsp1_rep	CDS	14713568	14714059	.	-	0	Parent=Os11t0444800-01
Chr11	irgsp1_rep	three_prime_UTR	14713141	14713567	.	-	.	Parent=Os11t0444800-01
Chr11	irgsp1_rep	mRNA	14713272	14714398	.	+	.	ID=Os11t0444900-01;Name=Os11t0444900-01;Locus_id=Os11g0444900;Note=Octicosapeptide/Phox/Bem1p domain containing protein.;Transcript_evidence=AK243679 (DDBJ%2C Best hit);ORF_evidence=Q8S336 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Phox/Bem1p (IPR000270);NIAS_FLcDNA=J100090H07;TENOR=Os11t0444900-01;KEGG=Os11t0444900-01
Chr11	irgsp1_rep	five_prime_UTR	14713272	14713382	.	+	.	Parent=Os11t0444900-01
Chr11	irgsp1_rep	CDS	14713383	14713623	.	+	0	Parent=Os11t0444900-01
Chr11	irgsp1_rep	CDS	14713716	14714125	.	+	2	Parent=Os11t0444900-01
Chr11	irgsp1_rep	three_prime_UTR	14714126	14714398	.	+	.	Parent=Os11t0444900-01
Chr11	irgsp1_rep	mRNA	14737667	14740509	.	+	.	ID=Os11t0445300-01;Name=Os11t0445300-01;Locus_id=Os11g0445300;CGSNL Gene Symbol=RLCK327;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 327;Oryzabase Gene Symbol Synonym(s)=OsRLCK327;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 327;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK073557 (DDBJ%2C Best hit);ORF_evidence=A2XQ61 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033046C19;Oryzabase=18998;Expression=AK073557;TENOR=Os11t0445300-01;KEGG=Os11t0445300-01
Chr11	irgsp1_rep	five_prime_UTR	14737667	14737812	.	+	.	Parent=Os11t0445300-01
Chr11	irgsp1_rep	CDS	14737813	14740410	.	+	0	Parent=Os11t0445300-01
Chr11	irgsp1_rep	three_prime_UTR	14740411	14740509	.	+	.	Parent=Os11t0445300-01
Chr11	irgsp1_rep	mRNA	14744466	14744944	.	+	.	ID=Os11t0445475-00;Name=Os11t0445475-00;Locus_id=Os11g0445475;Note=Similar to harpin-induced protein.;Transcript_evidence=AK373458 (DDBJ);ORF_evidence=NP_001150798.1 (RefSeq);TENOR=Os11t0445475-00
Chr11	irgsp1_rep	CDS	14744466	14744867	.	+	0	Parent=Os11t0445475-00
Chr11	irgsp1_rep	three_prime_UTR	14744868	14744944	.	+	.	Parent=Os11t0445475-00
Chr11	irgsp1_rep	mRNA	14787843	14789975	.	+	.	ID=Os11t0446000-01;Name=Os11t0446000-01;Locus_id=Os11g0446000;CGSNL Gene Symbol=RSS3;CGSNL Gene Name=RICE SALT SENSITIVE 3;Oryzabase Gene Name Synonym(s)=RICE SALT SENSITIVE3;Note=Conserved hypothetical protein.;Transcript_evidence=AK241315 (DDBJ%2C Best hit);ORF_evidence=NP_001067826.2 (RefSeq);NIAS_FLcDNA=J065142A02;Oryzabase=10272;TENOR=Os11t0446000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	14787843	14788925	.	+	.	Parent=Os11t0446000-01
Chr11	irgsp1_rep	CDS	14788926	14789720	.	+	0	Parent=Os11t0446000-01
Chr11	irgsp1_rep	three_prime_UTR	14789721	14789975	.	+	.	Parent=Os11t0446000-01
Chr11	irgsp1_rep	mRNA	14785191	14789976	.	+	.	ID=Os11t0446000-02;Name=Os11t0446000-02;Locus_id=Os11g0446000;RAP-DB Gene Symbol Synonym(s)=RSS3;RAP-DB Gene Name Synonym(s)=RICE SALT SENSITIVE 3%2C RICE SALT SENSITIVE3;CGSNL Gene Symbol=RSS3;CGSNL Gene Name=RICE SALT SENSITIVE 3;Oryzabase Gene Name Synonym(s)=RICE SALT SENSITIVE3;Note=Nuclear protein homologous to the regulatory domain of the R/B-like bHLH transcription factors%2C Regulation of jasmonate-induced gene expression and root cell elongation;Transcript_evidence=AB753860;ORF_evidence=K4PW38;InterPro=Transcription factor MYC/MYB N-terminal (IPR025610);Manual Curation=March 31%2C 2014;Literature_PMID=23715469;Oryzabase=10272
Chr11	irgsp1_rep	five_prime_UTR	14785191	14785455	.	+	.	Parent=Os11t0446000-02
Chr11	irgsp1_rep	CDS	14785456	14785623	.	+	0	Parent=Os11t0446000-02
Chr11	irgsp1_rep	CDS	14785718	14785768	.	+	0	Parent=Os11t0446000-02
Chr11	irgsp1_rep	CDS	14785868	14785996	.	+	0	Parent=Os11t0446000-02
Chr11	irgsp1_rep	CDS	14787336	14787440	.	+	0	Parent=Os11t0446000-02
Chr11	irgsp1_rep	CDS	14787896	14787937	.	+	0	Parent=Os11t0446000-02
Chr11	irgsp1_rep	CDS	14788035	14788091	.	+	0	Parent=Os11t0446000-02
Chr11	irgsp1_rep	CDS	14788896	14789720	.	+	0	Parent=Os11t0446000-02
Chr11	irgsp1_rep	three_prime_UTR	14789721	14789976	.	+	.	Parent=Os11t0446000-02
Chr11	irgsp1_rep	mRNA	14825455	14844235	.	+	.	ID=Os11t0446500-00;Name=Os11t0446500-00;Locus_id=Os11g0446500;Note=Similar to Phospholipid-translocating P-type ATPase%2C flippase family protein%2C expressed.;Transcript_evidence=AK331478 (DDBJ);ORF_evidence=Q2R575 (UniProt);GO=Biological Process: cation transport (GO:0006812),Biological Process: phospholipid transport (GO:0015914),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: phospholipid-translocating ATPase activity (GO:0004012),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C catalyzing transmembrane movement of substances (GO:0016820),Molecular Function: metal ion binding (GO:0046872);InterPro=ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),ATPase%2C P-type%2C phospholipid-translocating%2C flippase (IPR006539),ATPase%2C P-type%2C ATPase-associated domain (IPR008250),ATPase%2C P-type phosphorylation site (IPR018303),HAD-like domain (IPR023214),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C  P-type%2C cytoplasmic transduction domain A (IPR023300),ATPase%2C cation-transporting%2C domain N (IPR023306);TENOR=Os11t0446500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	14825455	14825455	.	+	.	Parent=Os11t0446500-00
Chr11	irgsp1_rep	CDS	14825456	14825577	.	+	0	Parent=Os11t0446500-00
Chr11	irgsp1_rep	CDS	14825703	14825916	.	+	1	Parent=Os11t0446500-00
Chr11	irgsp1_rep	CDS	14828092	14828208	.	+	0	Parent=Os11t0446500-00
Chr11	irgsp1_rep	CDS	14829571	14829663	.	+	0	Parent=Os11t0446500-00
Chr11	irgsp1_rep	CDS	14829741	14829915	.	+	0	Parent=Os11t0446500-00
Chr11	irgsp1_rep	CDS	14832308	14832474	.	+	2	Parent=Os11t0446500-00
Chr11	irgsp1_rep	CDS	14833761	14833865	.	+	0	Parent=Os11t0446500-00
Chr11	irgsp1_rep	CDS	14834288	14834385	.	+	0	Parent=Os11t0446500-00
Chr11	irgsp1_rep	CDS	14834467	14834609	.	+	1	Parent=Os11t0446500-00
Chr11	irgsp1_rep	CDS	14835190	14835283	.	+	2	Parent=Os11t0446500-00
Chr11	irgsp1_rep	CDS	14835371	14835480	.	+	1	Parent=Os11t0446500-00
Chr11	irgsp1_rep	CDS	14835578	14835742	.	+	2	Parent=Os11t0446500-00
Chr11	irgsp1_rep	CDS	14836011	14836165	.	+	2	Parent=Os11t0446500-00
Chr11	irgsp1_rep	CDS	14836245	14836325	.	+	0	Parent=Os11t0446500-00
Chr11	irgsp1_rep	CDS	14836408	14836528	.	+	0	Parent=Os11t0446500-00
Chr11	irgsp1_rep	CDS	14837351	14837457	.	+	2	Parent=Os11t0446500-00
Chr11	irgsp1_rep	CDS	14837530	14837661	.	+	0	Parent=Os11t0446500-00
Chr11	irgsp1_rep	CDS	14839098	14839251	.	+	0	Parent=Os11t0446500-00
Chr11	irgsp1_rep	CDS	14842087	14842204	.	+	2	Parent=Os11t0446500-00
Chr11	irgsp1_rep	CDS	14842337	14842510	.	+	1	Parent=Os11t0446500-00
Chr11	irgsp1_rep	CDS	14842824	14842875	.	+	1	Parent=Os11t0446500-00
Chr11	irgsp1_rep	CDS	14843443	14843570	.	+	0	Parent=Os11t0446500-00
Chr11	irgsp1_rep	CDS	14843663	14843813	.	+	1	Parent=Os11t0446500-00
Chr11	irgsp1_rep	CDS	14843897	14844235	.	+	0	Parent=Os11t0446500-00
Chr11	irgsp1_rep	mRNA	14883702	14890574	.	+	.	ID=Os11t0447300-01;Name=Os11t0447300-01;Locus_id=Os11g0447300;CGSNL Gene Symbol=RALF1;CGSNL Gene Name=RAPID ALKALIZATION FACTOR 1;Oryzabase Gene Symbol Synonym(s)=OsRALF-1%2C OsRALF1%2C RALF-1;Oryzabase Gene Name Synonym(s)=Rapid alkalization factor 1;Note=GTP-binding protein%2C HSR1-related domain containing protein.;Transcript_evidence=AK108044 (DDBJ%2C Best hit);ORF_evidence=NP_001151234.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=GTP-binding domain%2C HSR1-related (IPR002917),GTP-binding protein%2C orthogonal bundle domain (IPR023179);NIAS_FLcDNA=002-137-E01;Oryzabase=21105;Expression=AK108044;TENOR=Os11t0447300-01;KEGG=Os11t0447300-01
Chr11	irgsp1_rep	five_prime_UTR	14883702	14883838	.	+	.	Parent=Os11t0447300-01
Chr11	irgsp1_rep	CDS	14883839	14884000	.	+	0	Parent=Os11t0447300-01
Chr11	irgsp1_rep	CDS	14884531	14884635	.	+	0	Parent=Os11t0447300-01
Chr11	irgsp1_rep	CDS	14884785	14884862	.	+	0	Parent=Os11t0447300-01
Chr11	irgsp1_rep	CDS	14886166	14886307	.	+	0	Parent=Os11t0447300-01
Chr11	irgsp1_rep	CDS	14886387	14886457	.	+	2	Parent=Os11t0447300-01
Chr11	irgsp1_rep	CDS	14887203	14887299	.	+	0	Parent=Os11t0447300-01
Chr11	irgsp1_rep	CDS	14887510	14887721	.	+	2	Parent=Os11t0447300-01
Chr11	irgsp1_rep	CDS	14890015	14890260	.	+	0	Parent=Os11t0447300-01
Chr11	irgsp1_rep	three_prime_UTR	14890261	14890574	.	+	.	Parent=Os11t0447300-01
Chr11	irgsp1_rep	mRNA	14960642	14967864	.	+	.	ID=Os11t0448000-00;Name=Os11t0448000-00;Locus_id=Os11g0448000;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=tplb0015d21 (Wheat FLcDNA);ORF_evidence=NP_001067829.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os11t0448000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	14960642	14963237	.	+	0	Parent=Os11t0448000-00
Chr11	irgsp1_rep	CDS	14967366	14967835	.	+	2	Parent=Os11t0448000-00
Chr11	irgsp1_rep	three_prime_UTR	14967836	14967864	.	+	.	Parent=Os11t0448000-00
Chr11	irgsp1_rep	mRNA	14963264	14966510	.	+	.	ID=Os11t0448100-01;Name=Os11t0448100-01;Locus_id=Os11g0448100;Note=Non-protein coding transcript.;Transcript_evidence=AK106283 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-101-A05;TENOR=Os11t0448100-01
Chr11	irgsp1_rep	exon	14963264	14966510	.	+	.	Parent=Os11t0448100-01
Chr11	irgsp1_rep	mRNA	14969237	14972247	.	+	.	ID=Os11t0448200-01;Name=Os11t0448200-01;Locus_id=Os11g0448200;RAP-DB Gene Symbol Synonym(s)=ARK1;RAP-DB Gene Name Synonym(s)=Arbuscular Receptor-like Kinase 1;CGSNL Gene Symbol=AM14;CGSNL Gene Name=ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 14;Oryzabase Gene Symbol Synonym(s)=AM14;Note=Arbuscular receptor-like kinase%2C Regulation of arbuscular mycorrhizal symbiosis;Transcript_evidence=Inferred from literature;ORF_evidence=Q53JE9;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),Protein kinase domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271);Manual Curation=November 15%2C 2018;Literature_PMID=30410018;Oryzabase=8185;Subcellular location=periarbuscular membrane (GO:0085042)
Chr11	irgsp1_rep	CDS	14969237	14969318	.	+	0	Parent=Os11t0448200-01
Chr11	irgsp1_rep	CDS	14970125	14970148	.	+	2	Parent=Os11t0448200-01
Chr11	irgsp1_rep	CDS	14970249	14970374	.	+	2	Parent=Os11t0448200-01
Chr11	irgsp1_rep	CDS	14970484	14970825	.	+	2	Parent=Os11t0448200-01
Chr11	irgsp1_rep	CDS	14970948	14971063	.	+	2	Parent=Os11t0448200-01
Chr11	irgsp1_rep	CDS	14971159	14971419	.	+	0	Parent=Os11t0448200-01
Chr11	irgsp1_rep	CDS	14971868	14972065	.	+	0	Parent=Os11t0448200-01
Chr11	irgsp1_rep	CDS	14972170	14972247	.	+	0	Parent=Os11t0448200-01
Chr11	irgsp1_rep	mRNA	14975236	14979808	.	+	.	ID=Os11t0448400-01;Name=Os11t0448400-01;Locus_id=Os11g0448400;CGSNL Gene Symbol=SIG2A;CGSNL Gene Name=SIGMA FACTOR 2A;Oryzabase Gene Symbol Synonym(s)=OsSIG2A%2C OsSig2A;Oryzabase Gene Name Synonym(s)=Sigma factor SIG2A%2C Sigma factor 2A;Note=RNA polymerase sigma factor%2C region 2 domain containing protein.;Transcript_evidence=AK066099 (DDBJ%2C Best hit);ORF_evidence=Q7XXT0 (UniProt);GO=Biological Process: transcription initiation%2C DNA-dependent (GO:0006352),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sigma factor activity (GO:0016987);InterPro=RNA polymerase sigma factor%2C region 2 (IPR013325);NIAS_FLcDNA=J013054G24;Oryzabase=9721;Expression=AK066099;TENOR=Os11t0448400-01;KEGG=Os11t0448400-01
Chr11	irgsp1_rep	five_prime_UTR	14975236	14975372	.	+	.	Parent=Os11t0448400-01
Chr11	irgsp1_rep	CDS	14975373	14975645	.	+	0	Parent=Os11t0448400-01
Chr11	irgsp1_rep	CDS	14976310	14976867	.	+	0	Parent=Os11t0448400-01
Chr11	irgsp1_rep	CDS	14977586	14977816	.	+	0	Parent=Os11t0448400-01
Chr11	irgsp1_rep	CDS	14977904	14977948	.	+	0	Parent=Os11t0448400-01
Chr11	irgsp1_rep	three_prime_UTR	14977949	14978057	.	+	.	Parent=Os11t0448400-01
Chr11	irgsp1_rep	three_prime_UTR	14979044	14979241	.	+	.	Parent=Os11t0448400-01
Chr11	irgsp1_rep	three_prime_UTR	14979312	14979808	.	+	.	Parent=Os11t0448400-01
Chr11	irgsp1_rep	mRNA	14976460	14979767	.	+	.	ID=Os11t0448400-02;Name=Os11t0448400-02;Locus_id=Os11g0448400;CGSNL Gene Symbol=SIG2A;CGSNL Gene Name=SIGMA FACTOR 2A;Oryzabase Gene Symbol Synonym(s)=OsSIG2A%2C OsSig2A;Oryzabase Gene Name Synonym(s)=Sigma factor SIG2A%2C Sigma factor 2A;Note=Similar to Sigma-70 region 3 family protein%2C expressed.;Transcript_evidence=AK058650 (DDBJ%2C Best hit);ORF_evidence=Q7XXT0 (UniProt);GO=Biological Process: transcription initiation%2C DNA-dependent (GO:0006352),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sigma factor activity (GO:0016987);InterPro=RNA polymerase sigma-70 factor (IPR000943),RNA polymerase sigma-70 region 3 (IPR007624),RNA polymerase sigma-70 region 2 (IPR007627),RNA polymerase sigma-70 region 4 (IPR007630),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),RNA polymerase sigma factor%2C region 3/4 (IPR013324),RNA polymerase sigma factor%2C region 2 (IPR013325),RNA polymerase sigma-70 (IPR014284);NIAS_FLcDNA=001-018-F01;Oryzabase=9721;Expression=AK058650;TENOR=Os11t0448400-02;KEGG=Os11t0448400-02
Chr11	irgsp1_rep	CDS	14976460	14976867	.	+	0	Parent=Os11t0448400-02
Chr11	irgsp1_rep	CDS	14977586	14977816	.	+	0	Parent=Os11t0448400-02
Chr11	irgsp1_rep	CDS	14977917	14978057	.	+	0	Parent=Os11t0448400-02
Chr11	irgsp1_rep	CDS	14979044	14979241	.	+	0	Parent=Os11t0448400-02
Chr11	irgsp1_rep	CDS	14979312	14979605	.	+	0	Parent=Os11t0448400-02
Chr11	irgsp1_rep	three_prime_UTR	14979606	14979767	.	+	.	Parent=Os11t0448400-02
Chr11	irgsp1_rep	mRNA	14997460	14998182	.	+	.	ID=Os11t0448700-01;Name=Os11t0448700-01;Locus_id=Os11g0448700;CGSNL Gene Symbol=RALF31;CGSNL Gene Name=RAPID ALKALIZATION FACTOR 31;Oryzabase Gene Symbol Synonym(s)=OsRALF-31%2C OsRALF31%2C RALF-31;Oryzabase Gene Name Synonym(s)=Rapid alkalization factor 31;Note=Conserved hypothetical protein.;Transcript_evidence=AK068659 (DDBJ%2C Best hit);ORF_evidence=A2XQ68 (UniProt);NIAS_FLcDNA=J013161J11;Oryzabase=21132;Expression=AK068659;TENOR=Os11t0448700-01;KEGG=Os11t0448700-01
Chr11	irgsp1_rep	five_prime_UTR	14997460	14997515	.	+	.	Parent=Os11t0448700-01
Chr11	irgsp1_rep	CDS	14997516	14997836	.	+	0	Parent=Os11t0448700-01
Chr11	irgsp1_rep	three_prime_UTR	14997837	14998182	.	+	.	Parent=Os11t0448700-01
Chr11	irgsp1_rep	mRNA	15075242	15075772	.	+	.	ID=Os11t0449600-01;Name=Os11t0449600-01;Locus_id=Os11g0449600;CGSNL Gene Symbol=RALF32;CGSNL Gene Name=RAPID ALKALIZATION FACTOR 32;Oryzabase Gene Symbol Synonym(s)=OsRALF-32%2C OsRALF32%2C RALF-32;Oryzabase Gene Name Synonym(s)=Rapid alkalization factor 32;Note=Conserved hypothetical protein.;Transcript_evidence=AK099523 (DDBJ%2C Best hit);ORF_evidence=B8BMY5 (UniProt);NIAS_FLcDNA=J013030G07;Oryzabase=21133;Expression=AK099523;TENOR=Os11t0449600-01;KEGG=Os11t0449600-01
Chr11	irgsp1_rep	five_prime_UTR	15075242	15075270	.	+	.	Parent=Os11t0449600-01
Chr11	irgsp1_rep	CDS	15075271	15075585	.	+	0	Parent=Os11t0449600-01
Chr11	irgsp1_rep	three_prime_UTR	15075586	15075772	.	+	.	Parent=Os11t0449600-01
Chr11	irgsp1_rep	mRNA	15078647	15081746	.	+	.	ID=Os11t0450050-00;Name=Os11t0450050-00;Locus_id=Os11g0450050;Note=Conserved hypothetical protein.;Transcript_evidence=AK072376 (DDBJ%2C Secondary hit);ORF_evidence=NP_001067835.1 (RefSeq);TENOR=Os11t0450050-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	15078647	15078822	.	+	.	Parent=Os11t0450050-00
Chr11	irgsp1_rep	CDS	15078823	15079284	.	+	0	Parent=Os11t0450050-00
Chr11	irgsp1_rep	three_prime_UTR	15079285	15079940	.	+	.	Parent=Os11t0450050-00
Chr11	irgsp1_rep	three_prime_UTR	15080069	15080419	.	+	.	Parent=Os11t0450050-00
Chr11	irgsp1_rep	three_prime_UTR	15080520	15080726	.	+	.	Parent=Os11t0450050-00
Chr11	irgsp1_rep	three_prime_UTR	15080860	15080930	.	+	.	Parent=Os11t0450050-00
Chr11	irgsp1_rep	three_prime_UTR	15081523	15081746	.	+	.	Parent=Os11t0450050-00
Chr11	irgsp1_rep	mRNA	15114204	15115306	.	-	.	ID=Os11t0450400-01;Name=Os11t0450400-01;Locus_id=Os11g0450400;Note=Similar to Sulfotransferase domain containing protein%2C expressed.;Transcript_evidence=AK059900 (DDBJ%2C Best hit);ORF_evidence=Q2R534 (UniProt);GO=Molecular Function: sulfotransferase activity (GO:0008146);InterPro=Sulfotransferase domain (IPR000863);NIAS_FLcDNA=006-208-G02;TENOR=Os11t0450400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	15115282	15115306	.	-	.	Parent=Os11t0450400-01
Chr11	irgsp1_rep	CDS	15114298	15115281	.	-	0	Parent=Os11t0450400-01
Chr11	irgsp1_rep	three_prime_UTR	15114204	15114297	.	-	.	Parent=Os11t0450400-01
Chr11	irgsp1_rep	mRNA	15148659	15162790	.	+	.	ID=Os11t0451051-00;Name=Os11t0451051-00;Locus_id=Os11g0451051;Note=Conserved hypothetical protein.;Transcript_evidence=EU961985 (DDBJ);ORF_evidence=C0P7Z5 (UniProt);TENOR=Os11t0451051-00
Chr11	irgsp1_rep	five_prime_UTR	15148659	15148692	.	+	.	Parent=Os11t0451051-00
Chr11	irgsp1_rep	CDS	15148693	15148812	.	+	0	Parent=Os11t0451051-00
Chr11	irgsp1_rep	CDS	15149277	15149351	.	+	0	Parent=Os11t0451051-00
Chr11	irgsp1_rep	three_prime_UTR	15149352	15149488	.	+	.	Parent=Os11t0451051-00
Chr11	irgsp1_rep	three_prime_UTR	15150055	15150147	.	+	.	Parent=Os11t0451051-00
Chr11	irgsp1_rep	three_prime_UTR	15150562	15150678	.	+	.	Parent=Os11t0451051-00
Chr11	irgsp1_rep	three_prime_UTR	15150768	15150827	.	+	.	Parent=Os11t0451051-00
Chr11	irgsp1_rep	three_prime_UTR	15162475	15162790	.	+	.	Parent=Os11t0451051-00
Chr11	irgsp1_rep	mRNA	15223376	15224746	.	-	.	ID=Os11t0451700-00;Name=Os11t0451700-00;Locus_id=Os11g0451700;CGSNL Gene Symbol=DHN6;CGSNL Gene Name=DEHYDRIN 6;Oryzabase Gene Symbol Synonym(s)=OsLEA25%2C LEA25%2C OsEnS-143%2C OsRAB21%2C RAB21%2C Rab17%2C OsRab17;Oryzabase Gene Name Synonym(s)=late embryogenesis abundant protein 25%2C endosperm-specific gene 143;Note=Similar to Dehydrin DHN1 (M3) (RAB-17 protein).;Transcript_evidence=CT828256 (DDBJ%2C Best hit);ORF_evidence=NP_001067838.1 (RefSeq);GO=Biological Process: response to stress (GO:0006950),Biological Process: response to water (GO:0009415);InterPro=Dehydrin (IPR000167);Oryzabase=9035;TENOR=Os11t0451700-00;KEGG=Os11t0451700-00
Chr11	irgsp1_rep	five_prime_UTR	15224695	15224746	.	-	.	Parent=Os11t0451700-00
Chr11	irgsp1_rep	CDS	15223990	15224694	.	-	0	Parent=Os11t0451700-00
Chr11	irgsp1_rep	CDS	15223623	15223898	.	-	0	Parent=Os11t0451700-00
Chr11	irgsp1_rep	three_prime_UTR	15223376	15223622	.	-	.	Parent=Os11t0451700-00
Chr11	irgsp1_rep	mRNA	15236666	15239186	.	+	.	ID=Os11t0452400-01;Name=Os11t0452400-01;Locus_id=Os11g0452400;Note=Conserved hypothetical protein.;Transcript_evidence=AK066853 (DDBJ%2C Best hit);ORF_evidence=B9FZW9 (UniProt);NIAS_FLcDNA=J013077F22;TENOR=Os11t0452400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	15236666	15238842	.	+	.	Parent=Os11t0452400-01
Chr11	irgsp1_rep	CDS	15238843	15239103	.	+	0	Parent=Os11t0452400-01
Chr11	irgsp1_rep	three_prime_UTR	15239104	15239186	.	+	.	Parent=Os11t0452400-01
Chr11	irgsp1_rep	mRNA	15236669	15239277	.	+	.	ID=Os11t0452400-02;Name=Os11t0452400-02;Locus_id=Os11g0452400;Note=Conserved hypothetical protein.;Transcript_evidence=AK073190 (DDBJ%2C Best hit);ORF_evidence=B9FZW9 (UniProt);NIAS_FLcDNA=J033011P14;TENOR=Os11t0452400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	15236669	15237700	.	+	.	Parent=Os11t0452400-02
Chr11	irgsp1_rep	CDS	15237701	15237772	.	+	0	Parent=Os11t0452400-02
Chr11	irgsp1_rep	CDS	15238903	15239103	.	+	0	Parent=Os11t0452400-02
Chr11	irgsp1_rep	three_prime_UTR	15239104	15239277	.	+	.	Parent=Os11t0452400-02
Chr11	irgsp1_rep	mRNA	15294873	15295411	.	-	.	ID=Os11t0453550-01;Name=Os11t0453550-01;Locus_id=Os11g0453550;Note=Conserved hypothetical protein.;Transcript_evidence=AK242196 (DDBJ%2C Best hit);ORF_evidence=NP_001176523.1 (RefSeq);NIAS_FLcDNA=J075165I06;TENOR=Os11t0453550-01;KEGG=Os11t0453550-01
Chr11	irgsp1_rep	five_prime_UTR	15295343	15295411	.	-	.	Parent=Os11t0453550-01
Chr11	irgsp1_rep	CDS	15295252	15295342	.	-	0	Parent=Os11t0453550-01
Chr11	irgsp1_rep	CDS	15294951	15295159	.	-	2	Parent=Os11t0453550-01
Chr11	irgsp1_rep	three_prime_UTR	15294873	15294950	.	-	.	Parent=Os11t0453550-01
Chr11	irgsp1_rep	mRNA	15300034	15304498	.	-	.	ID=Os11t0453600-00;Name=Os11t0453600-00;Locus_id=Os11g0453600;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q53JQ1 (UniProt);TENOR=Os11t0453600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	15304475	15304498	.	-	0	Parent=Os11t0453600-00
Chr11	irgsp1_rep	CDS	15304227	15304325	.	-	0	Parent=Os11t0453600-00
Chr11	irgsp1_rep	CDS	15303643	15303786	.	-	0	Parent=Os11t0453600-00
Chr11	irgsp1_rep	CDS	15300034	15300213	.	-	0	Parent=Os11t0453600-00
Chr11	irgsp1_rep	mRNA	15320288	15321526	.	-	.	ID=Os11t0453900-01;Name=Os11t0453900-01;Locus_id=Os11g0453900;CGSNL Gene Symbol=RAB16D;CGSNL Gene Name=RESPONSIVE TO ABA GENE 16D;Oryzabase Gene Symbol Synonym(s)=rab21%2C OsLEA26%2C Rab16D%2C OsRab16;Oryzabase Gene Name Synonym(s)=RAB(RESPONSIVE TO ABA) GENE 16D%2C Dehydrin Rab16D%2C late embryogenesis abundant protein 26;Note=Dehydrin RAB 16D.;Transcript_evidence=AK109096 (DDBJ%2C Best hit);ORF_evidence=Q2R4Z8 (UniProt);GO=Biological Process: response to stress (GO:0006950),Biological Process: response to water (GO:0009415);InterPro=Dehydrin (IPR000167);NIAS_FLcDNA=002-155-A09;Oryzabase=8414;Expression=AK109096;TENOR=Os11t0453900-01;KEGG=Os11t0453900-01
Chr11	irgsp1_rep	five_prime_UTR	15321422	15321526	.	-	.	Parent=Os11t0453900-01
Chr11	irgsp1_rep	CDS	15321236	15321421	.	-	0	Parent=Os11t0453900-01
Chr11	irgsp1_rep	CDS	15320579	15320848	.	-	0	Parent=Os11t0453900-01
Chr11	irgsp1_rep	three_prime_UTR	15320288	15320578	.	-	.	Parent=Os11t0453900-01
Chr11	irgsp1_rep	mRNA	15327769	15328657	.	-	.	ID=Os11t0454000-01;Name=Os11t0454000-01;Locus_id=Os11g0454000;CGSNL Gene Symbol=RAB16C;CGSNL Gene Name=RESPONSIVE TO ABA GENE 16C;Oryzabase Gene Symbol Synonym(s)=rab21%2C OsLEA27%2C rab16C%2C OsRAB16C;Oryzabase Gene Name Synonym(s)=RAB(RESPONSIVE TO ABA) GENE 16C%2C Dehydrin Rab16C%2C late embryogenesis abundant protein 27;Note=Dehydrin RAB 16C.;Transcript_evidence=AK071366 (DDBJ%2C Best hit);ORF_evidence=Q2R4Z7 (UniProt);GO=Biological Process: response to stress (GO:0006950),Biological Process: response to water (GO:0009415);InterPro=Dehydrin (IPR000167);NIAS_FLcDNA=J023096D05;Oryzabase=8413;Expression=AK071366;TENOR=Os11t0454000-01;KEGG=Os11t0454000-01
Chr11	irgsp1_rep	five_prime_UTR	15328581	15328657	.	-	.	Parent=Os11t0454000-01
Chr11	irgsp1_rep	CDS	15328353	15328580	.	-	0	Parent=Os11t0454000-01
Chr11	irgsp1_rep	CDS	15327991	15328257	.	-	0	Parent=Os11t0454000-01
Chr11	irgsp1_rep	three_prime_UTR	15327769	15327990	.	-	.	Parent=Os11t0454000-01
Chr11	irgsp1_rep	mRNA	15336192	15337158	.	-	.	ID=Os11t0454200-01;Name=Os11t0454200-01;Locus_id=Os11g0454200;RAP-DB Gene Symbol Synonym(s)=RAB16B;RAP-DB Gene Name Synonym(s)=Dehydrin Rab16B;CGSNL Gene Symbol=RAB16B;CGSNL Gene Name=RESPONSIVE TO ABA GENE 16B;Oryzabase Gene Symbol Synonym(s)=rab21%2C OsLEA28%2C OsRAB16D%2C OsRAB16b%2C XERO1%2C OsXERO1;Oryzabase Gene Name Synonym(s)=Dehydrin Rab16B%2C RAB(RESPONSIVE TO ABA) GENE 16B%2C late embryogenesis abundant protein 28;Note=Dehydrin;Transcript_evidence=AK063517;ORF_evidence=Q2R4Z5;GO=Biological Process: response to stress (GO:0006950),Biological Process: response to water (GO:0009415);InterPro=Dehydrin (IPR000167),Dehydrin%2C conserved site (IPR030513);NIAS_FLcDNA=001-116-H03;Manual Curation=January 19%2C 2018;Literature_PMID=29045473;Oryzabase=8412;Expression=AK063517;TENOR=Os11t0454200-01;KEGG=Os11t0454200-01
Chr11	irgsp1_rep	five_prime_UTR	15337024	15337158	.	-	.	Parent=Os11t0454200-01
Chr11	irgsp1_rep	CDS	15336790	15337023	.	-	0	Parent=Os11t0454200-01
Chr11	irgsp1_rep	CDS	15336434	15336694	.	-	0	Parent=Os11t0454200-01
Chr11	irgsp1_rep	three_prime_UTR	15336192	15336433	.	-	.	Parent=Os11t0454200-01
Chr11	irgsp1_rep	mRNA	15339773	15340063	.	+	.	ID=Os11t0454250-00;Name=Os11t0454250-00;Locus_id=Os11g0454250;Note=Similar to Calmodulin.;Transcript_evidence=AK249909 (DDBJ);ORF_evidence=Q9LDQ9 (UniProt);TENOR=Os11t0454250-00
Chr11	irgsp1_rep	five_prime_UTR	15339773	15339913	.	+	.	Parent=Os11t0454250-00
Chr11	irgsp1_rep	CDS	15339914	15340063	.	+	0	Parent=Os11t0454250-00
Chr11	irgsp1_rep	mRNA	15342877	15343671	.	-	.	ID=Os11t0454300-01;Name=Os11t0454300-01;Locus_id=Os11g0454300;CGSNL Gene Symbol=RAB16A;CGSNL Gene Name=RESPONSIVE TO ABA GENE 16A;Oryzabase Gene Symbol Synonym(s)=Rab16A%2C rab21%2C RAB21%2C OsRab21%2C OsRAB21%2C OsRab16A%2C OsLEA29%2C rab16A%2C OsRAB16A;Oryzabase Gene Name Synonym(s)=RAB(responsive to ABA) gene 16A%2C RAB gene 16A%2C late embryogenesis abundant protein 29%2C responsive to ABA protein 21;Note=Similar to Water-stress inducible protein RAB21.;Transcript_evidence=AK121952 (DDBJ%2C Best hit);ORF_evidence=Q2R4Z4 (UniProt);GO=Biological Process: response to stress (GO:0006950),Biological Process: response to water (GO:0009415);InterPro=Dehydrin (IPR000167);NIAS_FLcDNA=J033107K14;Oryzabase=6385;Expression=AK121952;TENOR=Os11t0454300-01;KEGG=Os11t0454300-01
Chr11	irgsp1_rep	five_prime_UTR	15343581	15343671	.	-	.	Parent=Os11t0454300-01
Chr11	irgsp1_rep	CDS	15343314	15343580	.	-	0	Parent=Os11t0454300-01
Chr11	irgsp1_rep	CDS	15342975	15343226	.	-	0	Parent=Os11t0454300-01
Chr11	irgsp1_rep	three_prime_UTR	15342877	15342974	.	-	.	Parent=Os11t0454300-01
Chr11	irgsp1_rep	mRNA	15349255	15349907	.	-	.	ID=Os11t0454650-01;Name=Os11t0454650-01;Locus_id=Os11g0454650;Note=Non-protein coding transcript.;Transcript_evidence=AK240863 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065023F12;TENOR=Os11t0454650-01
Chr11	irgsp1_rep	exon	15349255	15349907	.	-	.	Parent=Os11t0454650-01
Chr11	irgsp1_rep	mRNA	15367651	15370082	.	+	.	ID=Os11t0454701-01;Name=Os11t0454701-01;Locus_id=Os11g0454701;Note=Conserved hypothetical protein.;Transcript_evidence=AK288191 (DDBJ%2C Best hit);ORF_evidence=NP_001176535.1 (RefSeq);NIAS_FLcDNA=J090007A11;TENOR=Os11t0454701-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	15367651	15367675	.	+	.	Parent=Os11t0454701-01
Chr11	irgsp1_rep	CDS	15367676	15367885	.	+	0	Parent=Os11t0454701-01
Chr11	irgsp1_rep	three_prime_UTR	15367886	15370082	.	+	.	Parent=Os11t0454701-01
Chr11	irgsp1_rep	mRNA	15403907	15411736	.	-	.	ID=Os11t0454800-01;Name=Os11t0454800-01;Locus_id=Os11g0454800;CGSNL Gene Symbol=MORC6B;CGSNL Gene Name=MICRORCHIDIA PROTEIN 6B;Oryzabase Gene Symbol Synonym(s)=OsMORC6b;Oryzabase Gene Name Synonym(s)=Microrchidia protein 6b;Note=Similar to ATPase%2C histidine kinase%2C DNA gyrase B-%2C and HSP90-like domain containing protein.;Transcript_evidence=AK242562 (DDBJ%2C Best hit);ORF_evidence=Q2R4Z0 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=ATPase-like%2C ATP-binding domain (IPR003594);NIAS_FLcDNA=J090004G24;Oryzabase=22641;TENOR=Os11t0454800-01;KEGG=Os11t0454800-01
Chr11	irgsp1_rep	five_prime_UTR	15411247	15411736	.	-	.	Parent=Os11t0454800-01
Chr11	irgsp1_rep	five_prime_UTR	15411116	15411149	.	-	.	Parent=Os11t0454800-01
Chr11	irgsp1_rep	five_prime_UTR	15409280	15409318	.	-	.	Parent=Os11t0454800-01
Chr11	irgsp1_rep	CDS	15408898	15409279	.	-	0	Parent=Os11t0454800-01
Chr11	irgsp1_rep	CDS	15408733	15408807	.	-	2	Parent=Os11t0454800-01
Chr11	irgsp1_rep	CDS	15408310	15408344	.	-	2	Parent=Os11t0454800-01
Chr11	irgsp1_rep	CDS	15408153	15408228	.	-	0	Parent=Os11t0454800-01
Chr11	irgsp1_rep	CDS	15407711	15407800	.	-	2	Parent=Os11t0454800-01
Chr11	irgsp1_rep	CDS	15407541	15407616	.	-	2	Parent=Os11t0454800-01
Chr11	irgsp1_rep	CDS	15407358	15407436	.	-	1	Parent=Os11t0454800-01
Chr11	irgsp1_rep	CDS	15407099	15407233	.	-	0	Parent=Os11t0454800-01
Chr11	irgsp1_rep	CDS	15406822	15406920	.	-	0	Parent=Os11t0454800-01
Chr11	irgsp1_rep	CDS	15406495	15406596	.	-	0	Parent=Os11t0454800-01
Chr11	irgsp1_rep	CDS	15406207	15406419	.	-	0	Parent=Os11t0454800-01
Chr11	irgsp1_rep	three_prime_UTR	15405974	15406206	.	-	.	Parent=Os11t0454800-01
Chr11	irgsp1_rep	three_prime_UTR	15405644	15405807	.	-	.	Parent=Os11t0454800-01
Chr11	irgsp1_rep	three_prime_UTR	15405163	15405541	.	-	.	Parent=Os11t0454800-01
Chr11	irgsp1_rep	three_prime_UTR	15404806	15404882	.	-	.	Parent=Os11t0454800-01
Chr11	irgsp1_rep	three_prime_UTR	15404658	15404700	.	-	.	Parent=Os11t0454800-01
Chr11	irgsp1_rep	three_prime_UTR	15403907	15404541	.	-	.	Parent=Os11t0454800-01
Chr11	irgsp1_rep	mRNA	15420145	15422972	.	-	.	ID=Os11t0455500-01;Name=Os11t0455500-01;Locus_id=Os11g0455500;Oryzabase Gene Symbol Synonym(s)=OsSAHH%2C SAHH;Oryzabase Gene Name Synonym(s)=AdoHcy hydrolase%2C Adenosylhomocysteinase%2C S-adenosyl-L-cystein hydrolase%2C S-adenosyl homocysteine hydrolase;Note=Similar to Adenosylhomocysteinase.;Transcript_evidence=AK059712 (DDBJ%2C Best hit),AK098924 (DDBJ%2C Best hit),AK119539 (DDBJ%2C Best hit),AK122115 (DDBJ%2C Best hit);ORF_evidence=Q84VE1 (UniProt);GO=Biological Process: one-carbon metabolic process (GO:0006730),Molecular Function: adenosylhomocysteinase activity (GO:0004013);InterPro=Adenosylhomocysteinase (IPR000043),S-adenosyl-L-homocysteine hydrolase%2C NAD binding (IPR015878),S-adenosyl-L-homocysteine hydrolase%2C conserved site (IPR020082);NIAS_FLcDNA=001-032-F05,J013002P17,001-204-C04,J033128A13;Oryzabase=14198;TENOR=Os11t0455500-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	15422971	15422972	.	-	.	Parent=Os11t0455500-01
Chr11	irgsp1_rep	CDS	15422170	15422970	.	-	0	Parent=Os11t0455500-01
Chr11	irgsp1_rep	CDS	15420772	15421308	.	-	0	Parent=Os11t0455500-01
Chr11	irgsp1_rep	CDS	15420470	15420679	.	-	0	Parent=Os11t0455500-01
Chr11	irgsp1_rep	three_prime_UTR	15420145	15420469	.	-	.	Parent=Os11t0455500-01
Chr11	irgsp1_rep	mRNA	15420139	15422193	.	-	.	ID=Os11t0455500-02;Name=Os11t0455500-02;Locus_id=Os11g0455500;Oryzabase Gene Symbol Synonym(s)=OsSAHH%2C SAHH;Oryzabase Gene Name Synonym(s)=AdoHcy hydrolase%2C Adenosylhomocysteinase%2C S-adenosyl-L-cystein hydrolase%2C S-adenosyl homocysteine hydrolase;Note=Similar to Adenosylhomocysteinase.;Transcript_evidence=AK060299 (DDBJ%2C Best hit);ORF_evidence=Q84VE1 (UniProt);GO=Biological Process: one-carbon metabolic process (GO:0006730),Molecular Function: adenosylhomocysteinase activity (GO:0004013);InterPro=Adenosylhomocysteinase (IPR000043),S-adenosyl-L-homocysteine hydrolase%2C NAD binding (IPR015878),S-adenosyl-L-homocysteine hydrolase%2C conserved site (IPR020082);NIAS_FLcDNA=001-006-G09;Oryzabase=14198;TENOR=Os11t0455500-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	15422170	15422193	.	-	0	Parent=Os11t0455500-02
Chr11	irgsp1_rep	CDS	15420772	15421308	.	-	0	Parent=Os11t0455500-02
Chr11	irgsp1_rep	CDS	15420470	15420679	.	-	0	Parent=Os11t0455500-02
Chr11	irgsp1_rep	three_prime_UTR	15420139	15420469	.	-	.	Parent=Os11t0455500-02
Chr11	irgsp1_rep	mRNA	15436736	15440042	.	+	.	ID=Os11t0455800-01;Name=Os11t0455800-01;Locus_id=Os11g0455800;Oryzabase Gene Symbol Synonym(s)=OsSHM2%2C SHM2%2C OsSHMT2%2C SHMT2%2C OsSHTM4%2C SHTM4;Oryzabase Gene Name Synonym(s)=serine hydroxymethyltransferase 2%2C serine hydroxymethyltransferase-4;Note=Similar to Serine hydroxymethyltransferase.;Transcript_evidence=AK101450 (DDBJ%2C Best hit),AK071541 (DDBJ%2C Best hit),AK105624 (DDBJ%2C Best hit);ORF_evidence=B4FBF4 (UniProt);GO=Biological Process: glycine metabolic process (GO:0006544),Biological Process: L-serine metabolic process (GO:0006563),Molecular Function: catalytic activity (GO:0003824),Molecular Function: glycine hydroxymethyltransferase activity (GO:0004372),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Serine hydroxymethyltransferase (IPR001085),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424),Serine hydroxymethyltransferase%2C pyridoxal phosphate binding site (IPR019798);NIAS_FLcDNA=J033039N02,J023100I04,001-200-C10;Oryzabase=19251;TENOR=Os11t0455800-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	15436736	15436815	.	+	.	Parent=Os11t0455800-01
Chr11	irgsp1_rep	CDS	15436816	15437493	.	+	0	Parent=Os11t0455800-01
Chr11	irgsp1_rep	CDS	15438544	15438934	.	+	0	Parent=Os11t0455800-01
Chr11	irgsp1_rep	CDS	15439028	15439129	.	+	2	Parent=Os11t0455800-01
Chr11	irgsp1_rep	CDS	15439397	15439641	.	+	2	Parent=Os11t0455800-01
Chr11	irgsp1_rep	three_prime_UTR	15439642	15440042	.	+	.	Parent=Os11t0455800-01
Chr11	irgsp1_rep	mRNA	15437370	15439932	.	+	.	ID=Os11t0455800-02;Name=Os11t0455800-02;Locus_id=Os11g0455800;Oryzabase Gene Symbol Synonym(s)=OsSHM2%2C SHM2%2C OsSHMT2%2C SHMT2%2C OsSHTM4%2C SHTM4;Oryzabase Gene Name Synonym(s)=serine hydroxymethyltransferase 2%2C serine hydroxymethyltransferase-4;Note=Similar to Serine hydroxymethyltransferase.;Transcript_evidence=AK105983 (DDBJ%2C Best hit);ORF_evidence=A3CB05 (UniProt);GO=Biological Process: glycine metabolic process (GO:0006544),Biological Process: L-serine metabolic process (GO:0006563),Molecular Function: catalytic activity (GO:0003824),Molecular Function: glycine hydroxymethyltransferase activity (GO:0004372),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Serine hydroxymethyltransferase (IPR001085),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424),Serine hydroxymethyltransferase%2C pyridoxal phosphate binding site (IPR019798);NIAS_FLcDNA=001-205-G03;Oryzabase=19251;TENOR=Os11t0455800-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	15437370	15437370	.	+	.	Parent=Os11t0455800-02
Chr11	irgsp1_rep	CDS	15437371	15437493	.	+	0	Parent=Os11t0455800-02
Chr11	irgsp1_rep	CDS	15438544	15438934	.	+	0	Parent=Os11t0455800-02
Chr11	irgsp1_rep	CDS	15439028	15439129	.	+	2	Parent=Os11t0455800-02
Chr11	irgsp1_rep	CDS	15439397	15439641	.	+	2	Parent=Os11t0455800-02
Chr11	irgsp1_rep	three_prime_UTR	15439642	15439932	.	+	.	Parent=Os11t0455800-02
Chr11	irgsp1_rep	mRNA	15445157	15445843	.	-	.	ID=Os11t0456000-01;Name=Os11t0456000-01;Locus_id=Os11g0456000;CGSNL Gene Symbol=RALF33;CGSNL Gene Name=RAPID ALKALIZATION FACTOR 33;Oryzabase Gene Symbol Synonym(s)=OsRALF-33%2C OsRALF33%2C RALF-33;Oryzabase Gene Name Synonym(s)=Rapid alkalization factor 33;Note=Similar to RALF.;Transcript_evidence=AK121173 (DDBJ%2C Best hit);ORF_evidence=NP_001150677.1 (RefSeq);InterPro=Rapid ALkalinization Factor (IPR008801);NIAS_FLcDNA=J023081K07;Oryzabase=21134;Expression=AK121173;TENOR=Os11t0456000-01;KEGG=Os11t0456000-01
Chr11	irgsp1_rep	five_prime_UTR	15445736	15445843	.	-	.	Parent=Os11t0456000-01
Chr11	irgsp1_rep	CDS	15445421	15445735	.	-	0	Parent=Os11t0456000-01
Chr11	irgsp1_rep	three_prime_UTR	15445157	15445420	.	-	.	Parent=Os11t0456000-01
Chr11	irgsp1_rep	mRNA	15445401	15446056	.	+	.	ID=Os11t0456050-00;Name=Os11t0456050-00;Locus_id=Os11g0456050;Note=Hypothetical gene.;Transcript_evidence=EU950607 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0456050-00;KEGG=Os11t0456050-00
Chr11	irgsp1_rep	five_prime_UTR	15445401	15445722	.	+	.	Parent=Os11t0456050-00
Chr11	irgsp1_rep	CDS	15445723	15445935	.	+	0	Parent=Os11t0456050-00
Chr11	irgsp1_rep	three_prime_UTR	15445936	15446056	.	+	.	Parent=Os11t0456050-00
Chr11	irgsp1_rep	mRNA	15447285	15450034	.	-	.	ID=Os11t0456100-01;Name=Os11t0456100-01;Locus_id=Os11g0456100;Note=Protein of unknown function DUF760 domain containing protein.;Transcript_evidence=AK099562 (DDBJ%2C Best hit);ORF_evidence=Q2R4Y3 (UniProt);InterPro=Protein of unknown function DUF760 (IPR008479);NIAS_FLcDNA=J013034L13;TENOR=Os11t0456100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	15450034	15450034	.	-	.	Parent=Os11t0456100-01
Chr11	irgsp1_rep	CDS	15449935	15450033	.	-	0	Parent=Os11t0456100-01
Chr11	irgsp1_rep	CDS	15448892	15449166	.	-	0	Parent=Os11t0456100-01
Chr11	irgsp1_rep	CDS	15447372	15448158	.	-	1	Parent=Os11t0456100-01
Chr11	irgsp1_rep	three_prime_UTR	15447285	15447371	.	-	.	Parent=Os11t0456100-01
Chr11	irgsp1_rep	mRNA	15452990	15455099	.	-	.	ID=Os11t0456200-01;Name=Os11t0456200-01;Locus_id=Os11g0456200;Note=Conserved hypothetical protein.;Transcript_evidence=AK060974 (DDBJ%2C Best hit);ORF_evidence=A2ZDY9 (UniProt);NIAS_FLcDNA=006-202-E04;Expression=AK060974;TENOR=Os11t0456200-01;KEGG=Os11t0456200-01
Chr11	irgsp1_rep	five_prime_UTR	15454878	15455099	.	-	.	Parent=Os11t0456200-01
Chr11	irgsp1_rep	CDS	15454692	15454877	.	-	0	Parent=Os11t0456200-01
Chr11	irgsp1_rep	CDS	15453146	15453532	.	-	0	Parent=Os11t0456200-01
Chr11	irgsp1_rep	three_prime_UTR	15452990	15453145	.	-	.	Parent=Os11t0456200-01
Chr11	irgsp1_rep	mRNA	15459465	15462337	.	+	.	ID=Os11t0456300-01;Name=Os11t0456300-01;Locus_id=Os11g0456300;Oryzabase Gene Symbol Synonym(s)=OSK1%2C SKP1%2C OsSKP1;Oryzabase Gene Name Synonym(s)=S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN%2C Oryza sativa SKP1-like gene 1%2C rice SKP1-like Protein1;Note=Similar to SKP1-like protein 1A.;Transcript_evidence=AK111678 (DDBJ%2C Best hit);ORF_evidence=B6T1N1 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);InterPro=SKP1 component (IPR001232),BTB/POZ fold (IPR011333),SKP1 component%2C dimerisation (IPR016072),SKP1 component%2C POZ (IPR016073),E3 ubiquitin ligase%2C SCF complex%2C Skp subunit (IPR016897);NIAS_FLcDNA=J013158P16;Oryzabase=15029;TENOR=Os11t0456300-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	15459465	15459581	.	+	.	Parent=Os11t0456300-01
Chr11	irgsp1_rep	CDS	15459582	15459929	.	+	0	Parent=Os11t0456300-01
Chr11	irgsp1_rep	CDS	15461938	15462111	.	+	0	Parent=Os11t0456300-01
Chr11	irgsp1_rep	three_prime_UTR	15462112	15462337	.	+	.	Parent=Os11t0456300-01
Chr11	irgsp1_rep	mRNA	15460947	15462351	.	+	.	ID=Os11t0456300-02;Name=Os11t0456300-02;Locus_id=Os11g0456300;Oryzabase Gene Symbol Synonym(s)=OSK1%2C SKP1%2C OsSKP1;Oryzabase Gene Name Synonym(s)=S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN%2C Oryza sativa SKP1-like gene 1%2C rice SKP1-like Protein1;Note=Similar to SKP1-like protein 1A.;Transcript_evidence=AK111945 (DDBJ%2C Best hit);ORF_evidence=NP_568603.1 (RefSeq);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);InterPro=SKP1 component (IPR001232),BTB/POZ fold (IPR011333),SKP1 component%2C dimerisation (IPR016072);NIAS_FLcDNA=001-023-D07;Oryzabase=15029;TENOR=Os11t0456300-02;KEGG=Os11t0456300-02
Chr11	irgsp1_rep	five_prime_UTR	15460947	15461892	.	+	.	Parent=Os11t0456300-02
Chr11	irgsp1_rep	CDS	15461893	15462111	.	+	0	Parent=Os11t0456300-02
Chr11	irgsp1_rep	three_prime_UTR	15462112	15462351	.	+	.	Parent=Os11t0456300-02
Chr11	irgsp1_rep	mRNA	15475373	15476302	.	-	.	ID=Os11t0457000-00;Name=Os11t0457000-00;Locus_id=Os11g0457000;Note=UDP-glucuronosyl/UDP-glucosyltransferase domain containing protein.;Transcript_evidence=AK353957 (DDBJ);ORF_evidence=NP_001067851.2 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);TENOR=Os11t0457000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	15475373	15476302	.	-	0	Parent=Os11t0457000-00
Chr11	irgsp1_rep	mRNA	15496821	15498561	.	-	.	ID=Os11t0457300-01;Name=Os11t0457300-01;Locus_id=Os11g0457300;Oryzabase Gene Symbol Synonym(s)=UGT;Oryzabase Gene Name Synonym(s)=UDP-glucosyltransferase;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK121144 (DDBJ%2C Best hit);ORF_evidence=A2ZDZ3 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J023078A01;Oryzabase=18255;Expression=AK121144;TENOR=Os11t0457300-01;KEGG=Os11t0457300-01
Chr11	irgsp1_rep	five_prime_UTR	15498503	15498561	.	-	.	Parent=Os11t0457300-01
Chr11	irgsp1_rep	CDS	15497063	15498502	.	-	0	Parent=Os11t0457300-01
Chr11	irgsp1_rep	three_prime_UTR	15496821	15497062	.	-	.	Parent=Os11t0457300-01
Chr11	irgsp1_rep	mRNA	15511373	15513464	.	-	.	ID=Os11t0457500-01;Name=Os11t0457500-01;Locus_id=Os11g0457500;Note=Hypothetical gene.;Transcript_evidence=AK288875 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090078N07;TENOR=Os11t0457500-01;KEGG=Os11t0457500-01
Chr11	irgsp1_rep	five_prime_UTR	15513218	15513464	.	-	.	Parent=Os11t0457500-01
Chr11	irgsp1_rep	CDS	15512942	15513217	.	-	0	Parent=Os11t0457500-01
Chr11	irgsp1_rep	three_prime_UTR	15511373	15512941	.	-	.	Parent=Os11t0457500-01
Chr11	irgsp1_rep	mRNA	15512128	15515505	.	+	.	ID=Os11t0457700-01;Name=Os11t0457700-01;Locus_id=Os11g0457700;Note=Hypothetical conserved gene.;Transcript_evidence=AK100899 (DDBJ%2C Best hit);ORF_evidence=B9GAK4 (UniProt);NIAS_FLcDNA=J023131G20;Expression=AK100899;TENOR=Os11t0457700-01;KEGG=Os11t0457700-01
Chr11	irgsp1_rep	five_prime_UTR	15512128	15512692	.	+	.	Parent=Os11t0457700-01
Chr11	irgsp1_rep	five_prime_UTR	15513473	15513818	.	+	.	Parent=Os11t0457700-01
Chr11	irgsp1_rep	five_prime_UTR	15513916	15514795	.	+	.	Parent=Os11t0457700-01
Chr11	irgsp1_rep	CDS	15514796	15514984	.	+	0	Parent=Os11t0457700-01
Chr11	irgsp1_rep	three_prime_UTR	15514985	15515505	.	+	.	Parent=Os11t0457700-01
Chr11	irgsp1_rep	mRNA	15531495	15532837	.	-	.	ID=Os11t0458100-01;Name=Os11t0458100-01;Locus_id=Os11g0458100;Note=Conserved hypothetical protein.;Transcript_evidence=AK064092 (DDBJ%2C Best hit);ORF_evidence=Q2R4X3 (UniProt);NIAS_FLcDNA=002-100-E08;TENOR=Os11t0458100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	15532836	15532837	.	-	.	Parent=Os11t0458100-01
Chr11	irgsp1_rep	CDS	15531786	15532835	.	-	0	Parent=Os11t0458100-01
Chr11	irgsp1_rep	three_prime_UTR	15531495	15531785	.	-	.	Parent=Os11t0458100-01
Chr11	irgsp1_rep	mRNA	15540629	15541031	.	-	.	ID=Os11t0458333-00;Name=Os11t0458333-00;Locus_id=Os11g0458333;Note=Non-protein coding transcript.;Transcript_evidence=FP091347 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0458333-00
Chr11	irgsp1_rep	exon	15540911	15541031	.	-	.	Parent=Os11t0458333-00
Chr11	irgsp1_rep	exon	15540629	15540779	.	-	.	Parent=Os11t0458333-00
Chr11	irgsp1_rep	mRNA	15560842	15563274	.	+	.	ID=Os11t0458500-00;Name=Os11t0458500-00;Locus_id=Os11g0458500;Note=Hypothetical conserved gene.;Transcript_evidence=CT835646 (DDBJ%2C Best hit);ORF_evidence=Q2R4X0 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Domain of unknown function DUF629 (IPR006865),Tetratricopeptide-like helical (IPR011990);TENOR=Os11t0458500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	15560842	15560870	.	+	.	Parent=Os11t0458500-00
Chr11	irgsp1_rep	CDS	15560871	15562397	.	+	0	Parent=Os11t0458500-00
Chr11	irgsp1_rep	CDS	15562501	15562608	.	+	0	Parent=Os11t0458500-00
Chr11	irgsp1_rep	CDS	15562703	15562864	.	+	0	Parent=Os11t0458500-00
Chr11	irgsp1_rep	CDS	15563009	15563014	.	+	0	Parent=Os11t0458500-00
Chr11	irgsp1_rep	three_prime_UTR	15563015	15563274	.	+	.	Parent=Os11t0458500-00
Chr11	irgsp1_rep	mRNA	15564389	15565050	.	+	.	ID=Os11t0458600-00;Name=Os11t0458600-00;Locus_id=Os11g0458600;Oryzabase Gene Symbol Synonym(s)=OsM9%2C M9%2C OsM9a;Oryzabase Gene Name Synonym(s)=single domain MDC protein 9%2C single MATH domain containing protein 9;Note=Similar to MATH domain containing protein.;Transcript_evidence=EU966606 (DDBJ);ORF_evidence=Q2R4W9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=MATH (IPR002083),TRAF-like (IPR008974),TRAF-type (IPR013322);Oryzabase=21190;TENOR=Os11t0458600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	15564389	15564489	.	+	.	Parent=Os11t0458600-00
Chr11	irgsp1_rep	CDS	15564490	15565050	.	+	0	Parent=Os11t0458600-00
Chr11	irgsp1_rep	mRNA	15598634	15600299	.	-	.	ID=Os11t0459200-01;Name=Os11t0459200-01;Locus_id=Os11g0459200;Note=Hypothetical protein.;Transcript_evidence=AK070697 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023058P13;Expression=AK070697;TENOR=Os11t0459200-01;KEGG=Os11t0459200-01
Chr11	irgsp1_rep	five_prime_UTR	15600246	15600299	.	-	.	Parent=Os11t0459200-01
Chr11	irgsp1_rep	CDS	15599499	15600245	.	-	0	Parent=Os11t0459200-01
Chr11	irgsp1_rep	three_prime_UTR	15598634	15599498	.	-	.	Parent=Os11t0459200-01
Chr11	irgsp1_rep	mRNA	15598884	15600236	.	+	.	ID=Os11t0459300-00;Name=Os11t0459300-00;Locus_id=Os11g0459300;Note=Protein of unknown function DUF1719%2C Oryza sativa domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001176526.1 (RefSeq);InterPro=Protein of unknown function DUF1719%2C Oryza sativa (IPR013181);TENOR=Os11t0459300-00;KEGG=Os11t0459300-00
Chr11	irgsp1_rep	CDS	15598884	15600236	.	+	0	Parent=Os11t0459300-00
Chr11	irgsp1_rep	mRNA	15600678	15601310	.	-	.	ID=Os11t0459400-01;Name=Os11t0459400-01;Locus_id=Os11g0459400;Note=Hypothetical protein.;Transcript_evidence=AK121073 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023061N20;TENOR=Os11t0459400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	15601310	15601310	.	-	.	Parent=Os11t0459400-01
Chr11	irgsp1_rep	CDS	15601001	15601309	.	-	0	Parent=Os11t0459400-01
Chr11	irgsp1_rep	three_prime_UTR	15600678	15601000	.	-	.	Parent=Os11t0459400-01
Chr11	irgsp1_rep	mRNA	15609503	15637145	.	+	.	ID=Os11t0459600-01;Name=Os11t0459600-01;Locus_id=Os11g0459600;Note=Conserved hypothetical protein.;Transcript_evidence=AK109246 (DDBJ%2C Best hit);ORF_evidence=A2ZE12 (UniProt);NIAS_FLcDNA=002-156-G12;TENOR=Os11t0459600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	15609503	15609723	.	+	.	Parent=Os11t0459600-01
Chr11	irgsp1_rep	five_prime_UTR	15636791	15637063	.	+	.	Parent=Os11t0459600-01
Chr11	irgsp1_rep	CDS	15637064	15637145	.	+	0	Parent=Os11t0459600-01
Chr11	irgsp1_rep	mRNA	15667656	15670725	.	+	.	ID=Os11t0460500-01;Name=Os11t0460500-01;Locus_id=Os11g0460500;Note=Conserved hypothetical protein.;Transcript_evidence=AK106953 (DDBJ%2C Best hit);ORF_evidence=Q8LJJ8 (UniProt);NIAS_FLcDNA=002-119-E06;Expression=AK106953;TENOR=Os11t0460500-01;KEGG=Os11t0460500-01
Chr11	irgsp1_rep	five_prime_UTR	15667656	15667855	.	+	.	Parent=Os11t0460500-01
Chr11	irgsp1_rep	five_prime_UTR	15669608	15669812	.	+	.	Parent=Os11t0460500-01
Chr11	irgsp1_rep	CDS	15669813	15670058	.	+	0	Parent=Os11t0460500-01
Chr11	irgsp1_rep	three_prime_UTR	15670059	15670725	.	+	.	Parent=Os11t0460500-01
Chr11	irgsp1_rep	mRNA	15671519	15676421	.	+	.	ID=Os11t0460700-01;Name=Os11t0460700-01;Locus_id=Os11g0460700;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK119432 (DDBJ%2C Best hit);ORF_evidence=A2WXL6 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=001-133-A06;TENOR=Os11t0460700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	15671519	15672268	.	+	.	Parent=Os11t0460700-01
Chr11	irgsp1_rep	CDS	15672269	15672652	.	+	0	Parent=Os11t0460700-01
Chr11	irgsp1_rep	three_prime_UTR	15672653	15673187	.	+	.	Parent=Os11t0460700-01
Chr11	irgsp1_rep	three_prime_UTR	15673490	15673607	.	+	.	Parent=Os11t0460700-01
Chr11	irgsp1_rep	three_prime_UTR	15673977	15674316	.	+	.	Parent=Os11t0460700-01
Chr11	irgsp1_rep	three_prime_UTR	15674541	15674613	.	+	.	Parent=Os11t0460700-01
Chr11	irgsp1_rep	three_prime_UTR	15675213	15675363	.	+	.	Parent=Os11t0460700-01
Chr11	irgsp1_rep	three_prime_UTR	15676059	15676421	.	+	.	Parent=Os11t0460700-01
Chr11	irgsp1_rep	mRNA	15683051	15694779	.	+	.	ID=Os11t0460800-01;Name=Os11t0460800-01;Locus_id=Os11g0460800;CGSNL Gene Symbol=SCP59;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 59;Oryzabase Gene Symbol Synonym(s)=OsSCP59%2C OsSCP60%2C SCP60;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 59%2C Serine carboxypeptidase 60;Note=Peptidase S10%2C serine carboxypeptidase family protein.;Transcript_evidence=AK066902 (DDBJ%2C Best hit);ORF_evidence=B6TG69 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563);NIAS_FLcDNA=J013092B20;Oryzabase=19234;Expression=AK066902;TENOR=Os11t0460800-01;KEGG=Os11t0460800-01
Chr11	irgsp1_rep	five_prime_UTR	15683051	15683248	.	+	.	Parent=Os11t0460800-01
Chr11	irgsp1_rep	five_prime_UTR	15683442	15683472	.	+	.	Parent=Os11t0460800-01
Chr11	irgsp1_rep	CDS	15683473	15683663	.	+	0	Parent=Os11t0460800-01
Chr11	irgsp1_rep	CDS	15684516	15684661	.	+	1	Parent=Os11t0460800-01
Chr11	irgsp1_rep	CDS	15685111	15685190	.	+	2	Parent=Os11t0460800-01
Chr11	irgsp1_rep	CDS	15685340	15685462	.	+	0	Parent=Os11t0460800-01
Chr11	irgsp1_rep	CDS	15690088	15690190	.	+	0	Parent=Os11t0460800-01
Chr11	irgsp1_rep	CDS	15690539	15690576	.	+	2	Parent=Os11t0460800-01
Chr11	irgsp1_rep	CDS	15690744	15690845	.	+	0	Parent=Os11t0460800-01
Chr11	irgsp1_rep	CDS	15692053	15692133	.	+	0	Parent=Os11t0460800-01
Chr11	irgsp1_rep	CDS	15692292	15692441	.	+	0	Parent=Os11t0460800-01
Chr11	irgsp1_rep	CDS	15692561	15692632	.	+	0	Parent=Os11t0460800-01
Chr11	irgsp1_rep	CDS	15692762	15692880	.	+	0	Parent=Os11t0460800-01
Chr11	irgsp1_rep	CDS	15693168	15693281	.	+	1	Parent=Os11t0460800-01
Chr11	irgsp1_rep	CDS	15694341	15694389	.	+	1	Parent=Os11t0460800-01
Chr11	irgsp1_rep	CDS	15694545	15694628	.	+	0	Parent=Os11t0460800-01
Chr11	irgsp1_rep	three_prime_UTR	15694629	15694779	.	+	.	Parent=Os11t0460800-01
Chr11	irgsp1_rep	mRNA	15683494	15690844	.	-	.	ID=Os11t0460851-00;Name=Os11t0460851-00;Locus_id=Os11g0460851;Note=Non-protein coding transcript.;Transcript_evidence=tplb0037b22 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os11t0460851-00
Chr11	irgsp1_rep	exon	15690740	15690844	.	-	.	Parent=Os11t0460851-00
Chr11	irgsp1_rep	exon	15690086	15690222	.	-	.	Parent=Os11t0460851-00
Chr11	irgsp1_rep	exon	15685343	15685466	.	-	.	Parent=Os11t0460851-00
Chr11	irgsp1_rep	exon	15685135	15685193	.	-	.	Parent=Os11t0460851-00
Chr11	irgsp1_rep	exon	15684532	15684680	.	-	.	Parent=Os11t0460851-00
Chr11	irgsp1_rep	exon	15683494	15683676	.	-	.	Parent=Os11t0460851-00
Chr11	irgsp1_rep	mRNA	15700955	15701662	.	+	.	ID=Os11t0460900-00;Name=Os11t0460900-00;Locus_id=Os11g0460900;Note=Protein of unknown function DUF1118 domain containing protein.;Transcript_evidence=AK360451 (DDBJ);ORF_evidence=NP_001067105.1 (RefSeq);InterPro=Protein of unknown function DUF1118 (IPR009500);TENOR=Os11t0460900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	15700955	15701031	.	+	.	Parent=Os11t0460900-00
Chr11	irgsp1_rep	CDS	15701032	15701098	.	+	0	Parent=Os11t0460900-00
Chr11	irgsp1_rep	CDS	15701196	15701662	.	+	2	Parent=Os11t0460900-00
Chr11	irgsp1_rep	mRNA	15706845	15738054	.	+	.	ID=Os11t0461000-01;Name=Os11t0461000-01;Locus_id=Os11g0461000;CGSNL Gene Symbol=SCP61;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 61;Oryzabase Gene Symbol Synonym(s)=OsSCP61%2C OsSCP62%2C SCP62;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 61%2C Serine carboxypeptidase 62;Note=Peptidase S10%2C serine carboxypeptidase family protein.;Transcript_evidence=AK106123 (DDBJ%2C Best hit),AK121476 (DDBJ%2C Best hit);ORF_evidence=B6TG69 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=001-207-F01,J023149B05;Oryzabase=19235;Expression=AK106123;TENOR=Os11t0461000-01;KEGG=Os11t0461000-01
Chr11	irgsp1_rep	five_prime_UTR	15706845	15706873	.	+	.	Parent=Os11t0461000-01
Chr11	irgsp1_rep	CDS	15706874	15707079	.	+	0	Parent=Os11t0461000-01
Chr11	irgsp1_rep	CDS	15713070	15713215	.	+	1	Parent=Os11t0461000-01
Chr11	irgsp1_rep	CDS	15713366	15713445	.	+	2	Parent=Os11t0461000-01
Chr11	irgsp1_rep	CDS	15713568	15713690	.	+	0	Parent=Os11t0461000-01
Chr11	irgsp1_rep	CDS	15721114	15721216	.	+	0	Parent=Os11t0461000-01
Chr11	irgsp1_rep	CDS	15722052	15722089	.	+	2	Parent=Os11t0461000-01
Chr11	irgsp1_rep	CDS	15722254	15722355	.	+	0	Parent=Os11t0461000-01
Chr11	irgsp1_rep	CDS	15734705	15734785	.	+	0	Parent=Os11t0461000-01
Chr11	irgsp1_rep	CDS	15735349	15735507	.	+	0	Parent=Os11t0461000-01
Chr11	irgsp1_rep	CDS	15735629	15735700	.	+	0	Parent=Os11t0461000-01
Chr11	irgsp1_rep	CDS	15736012	15736130	.	+	0	Parent=Os11t0461000-01
Chr11	irgsp1_rep	CDS	15736451	15736564	.	+	1	Parent=Os11t0461000-01
Chr11	irgsp1_rep	CDS	15737585	15737633	.	+	1	Parent=Os11t0461000-01
Chr11	irgsp1_rep	CDS	15737825	15737908	.	+	0	Parent=Os11t0461000-01
Chr11	irgsp1_rep	three_prime_UTR	15737909	15738054	.	+	.	Parent=Os11t0461000-01
Chr11	irgsp1_rep	mRNA	15706847	15707470	.	+	.	ID=Os11t0461000-02;Name=Os11t0461000-02;Locus_id=Os11g0461000;CGSNL Gene Symbol=SCP61;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 61;Oryzabase Gene Symbol Synonym(s)=OsSCP61%2C OsSCP62%2C SCP62;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 61%2C Serine carboxypeptidase 62;Note=Hypothetical conserved gene.;Transcript_evidence=AK062672 (DDBJ%2C Best hit);ORF_evidence=B9GAL3 (UniProt);NIAS_FLcDNA=001-105-G05;Oryzabase=19235;Expression=AK062672;TENOR=Os11t0461000-02;KEGG=Os11t0461000-02
Chr11	irgsp1_rep	five_prime_UTR	15706847	15706873	.	+	.	Parent=Os11t0461000-02
Chr11	irgsp1_rep	CDS	15706874	15707079	.	+	0	Parent=Os11t0461000-02
Chr11	irgsp1_rep	CDS	15707169	15707364	.	+	1	Parent=Os11t0461000-02
Chr11	irgsp1_rep	three_prime_UTR	15707365	15707470	.	+	.	Parent=Os11t0461000-02
Chr11	irgsp1_rep	mRNA	15706865	15715542	.	+	.	ID=Os11t0461000-03;Name=Os11t0461000-03;Locus_id=Os11g0461000;CGSNL Gene Symbol=SCP61;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 61;Oryzabase Gene Symbol Synonym(s)=OsSCP61%2C OsSCP62%2C SCP62;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 61%2C Serine carboxypeptidase 62;Note=Peptidase S10%2C serine carboxypeptidase family protein.;Transcript_evidence=AK072925 (DDBJ%2C Best hit);ORF_evidence=B6TG69 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563);NIAS_FLcDNA=J023148C06;Oryzabase=19235;Expression=AK072925;TENOR=Os11t0461000-03;KEGG=Os11t0461000-03
Chr11	irgsp1_rep	five_prime_UTR	15706865	15706873	.	+	.	Parent=Os11t0461000-03
Chr11	irgsp1_rep	CDS	15706874	15707079	.	+	0	Parent=Os11t0461000-03
Chr11	irgsp1_rep	CDS	15713070	15713215	.	+	1	Parent=Os11t0461000-03
Chr11	irgsp1_rep	CDS	15713366	15713445	.	+	2	Parent=Os11t0461000-03
Chr11	irgsp1_rep	CDS	15713568	15713705	.	+	0	Parent=Os11t0461000-03
Chr11	irgsp1_rep	three_prime_UTR	15713706	15715542	.	+	.	Parent=Os11t0461000-03
Chr11	irgsp1_rep	mRNA	15747042	15748173	.	+	.	ID=Os11t0461200-01;Name=Os11t0461200-01;Locus_id=Os11g0461200;Note=UDP-glucuronosyl/UDP-glucosyltransferase domain containing protein.;Transcript_evidence=AK061200 (DDBJ%2C Best hit);ORF_evidence=Q2R4T5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=006-210-A08;TENOR=Os11t0461200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	15747042	15747042	.	+	.	Parent=Os11t0461200-01
Chr11	irgsp1_rep	CDS	15747043	15748005	.	+	0	Parent=Os11t0461200-01
Chr11	irgsp1_rep	three_prime_UTR	15748006	15748173	.	+	.	Parent=Os11t0461200-01
Chr11	irgsp1_rep	mRNA	15764680	15766318	.	+	.	ID=Os11t0462100-01;Name=Os11t0462100-01;Locus_id=Os11g0462100;Note=Glycoside hydrolase%2C family 18 protein.;Transcript_evidence=AK102820 (DDBJ%2C Best hit);ORF_evidence=A2ZE15 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: chitin catabolic process (GO:0006032),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: chitinase activity (GO:0004568),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 18%2C catalytic domain (IPR001223),Chitinase II (IPR011583),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J033108N22;Expression=AK102820;TENOR=Os11t0462100-01;KEGG=Os11t0462100-01
Chr11	irgsp1_rep	five_prime_UTR	15764680	15764806	.	+	.	Parent=Os11t0462100-01
Chr11	irgsp1_rep	CDS	15764807	15765983	.	+	0	Parent=Os11t0462100-01
Chr11	irgsp1_rep	CDS	15766058	15766236	.	+	2	Parent=Os11t0462100-01
Chr11	irgsp1_rep	three_prime_UTR	15766237	15766318	.	+	.	Parent=Os11t0462100-01
Chr11	irgsp1_rep	mRNA	15764727	15766259	.	+	.	ID=Os11t0462100-02;Name=Os11t0462100-02;Locus_id=Os11g0462100;Note=Glycoside hydrolase%2C family 18 protein.;Transcript_evidence=AK060376 (DDBJ%2C Best hit);ORF_evidence=A2ZE15 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: chitin catabolic process (GO:0006032),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: chitinase activity (GO:0004568),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 18%2C catalytic domain (IPR001223),Chitinase II (IPR011583),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-009-C12;Expression=AK060376;TENOR=Os11t0462100-02;KEGG=Os11t0462100-02
Chr11	irgsp1_rep	five_prime_UTR	15764727	15764806	.	+	.	Parent=Os11t0462100-02
Chr11	irgsp1_rep	CDS	15764807	15765983	.	+	0	Parent=Os11t0462100-02
Chr11	irgsp1_rep	CDS	15766058	15766236	.	+	2	Parent=Os11t0462100-02
Chr11	irgsp1_rep	three_prime_UTR	15766237	15766259	.	+	.	Parent=Os11t0462100-02
Chr11	irgsp1_rep	mRNA	15786746	15791276	.	-	.	ID=Os11t0462500-00;Name=Os11t0462500-00;Locus_id=Os11g0462500;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=AK331045 (DDBJ);ORF_evidence=Q2R4S9 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os11t0462500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	15791271	15791276	.	-	.	Parent=Os11t0462500-00
Chr11	irgsp1_rep	CDS	15790486	15791270	.	-	0	Parent=Os11t0462500-00
Chr11	irgsp1_rep	CDS	15786746	15788930	.	-	1	Parent=Os11t0462500-00
Chr11	irgsp1_rep	mRNA	15787257	15788978	.	+	.	ID=Os11t0462600-01;Name=Os11t0462600-01;Locus_id=Os11g0462600;Note=Non-protein coding transcript.;Transcript_evidence=AK064471 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-110-H05;TENOR=Os11t0462600-01
Chr11	irgsp1_rep	exon	15787257	15788700	.	+	.	Parent=Os11t0462600-01
Chr11	irgsp1_rep	exon	15788794	15788978	.	+	.	Parent=Os11t0462600-01
Chr11	irgsp1_rep	mRNA	15797776	15799960	.	-	.	ID=Os11t0462800-01;Name=Os11t0462800-01;Locus_id=Os11g0462800;Note=Non-protein coding transcript.;Transcript_evidence=AK121688 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J033071A03;TENOR=Os11t0462800-01
Chr11	irgsp1_rep	exon	15797776	15799960	.	-	.	Parent=Os11t0462800-01
Chr11	irgsp1_rep	mRNA	15796950	15801914	.	-	.	ID=Os11t0462850-00;Name=Os11t0462850-00;Locus_id=Os11g0462850;Note=Hypothetical protein.;Transcript_evidence=tplb0061j05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0462850-00
Chr11	irgsp1_rep	five_prime_UTR	15800161	15801914	.	-	.	Parent=Os11t0462850-00
Chr11	irgsp1_rep	five_prime_UTR	15797747	15797758	.	-	.	Parent=Os11t0462850-00
Chr11	irgsp1_rep	CDS	15797459	15797746	.	-	0	Parent=Os11t0462850-00
Chr11	irgsp1_rep	three_prime_UTR	15796950	15797458	.	-	.	Parent=Os11t0462850-00
Chr11	irgsp1_rep	mRNA	15796775	15803937	.	+	.	ID=Os11t0462900-00;Name=Os11t0462900-00;Locus_id=Os11g0462900;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=AK371208 (DDBJ);ORF_evidence=Q109S2 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182),Leucine-rich repeat%2C cysteine-containing subtype (IPR006553);TENOR=Os11t0462900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	15796775	15797760	.	+	0	Parent=Os11t0462900-00
Chr11	irgsp1_rep	CDS	15800163	15803937	.	+	1	Parent=Os11t0462900-00
Chr11	irgsp1_rep	mRNA	15802095	15803938	.	-	.	ID=Os11t0462950-00;Name=Os11t0462950-00;Locus_id=Os11g0462950;Note=Hypothetical protein.;Transcript_evidence=tplb0032b19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0462950-00
Chr11	irgsp1_rep	five_prime_UTR	15803769	15803938	.	-	.	Parent=Os11t0462950-00
Chr11	irgsp1_rep	CDS	15803436	15803768	.	-	0	Parent=Os11t0462950-00
Chr11	irgsp1_rep	three_prime_UTR	15802095	15803435	.	-	.	Parent=Os11t0462950-00
Chr11	irgsp1_rep	mRNA	15840376	15844396	.	+	.	ID=Os11t0463600-01;Name=Os11t0463600-01;Locus_id=Os11g0463600;Note=Similar to FHA domain containing protein%2C expressed.;Transcript_evidence=AK064625 (DDBJ%2C Best hit);ORF_evidence=Q2R4R9 (UniProt);NIAS_FLcDNA=002-113-E12;TENOR=Os11t0463600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	15840376	15840376	.	+	.	Parent=Os11t0463600-01
Chr11	irgsp1_rep	CDS	15840377	15840602	.	+	0	Parent=Os11t0463600-01
Chr11	irgsp1_rep	CDS	15842133	15842290	.	+	2	Parent=Os11t0463600-01
Chr11	irgsp1_rep	CDS	15843977	15844186	.	+	0	Parent=Os11t0463600-01
Chr11	irgsp1_rep	three_prime_UTR	15844187	15844396	.	+	.	Parent=Os11t0463600-01
Chr11	irgsp1_rep	mRNA	15851159	15852070	.	-	.	ID=Os11t0463700-01;Name=Os11t0463700-01;Locus_id=Os11g0463700;Note=Penicillin-binding protein%2C transpeptidase fold domain containing protein.;Transcript_evidence=AK065785 (DDBJ%2C Best hit);ORF_evidence=D7NXT9 (UniProt);NIAS_FLcDNA=J013042B18;Expression=AK065785;TENOR=Os11t0463700-01;KEGG=Os11t0463700-01
Chr11	irgsp1_rep	five_prime_UTR	15851977	15852070	.	-	.	Parent=Os11t0463700-01
Chr11	irgsp1_rep	CDS	15851872	15851976	.	-	0	Parent=Os11t0463700-01
Chr11	irgsp1_rep	CDS	15851515	15851784	.	-	0	Parent=Os11t0463700-01
Chr11	irgsp1_rep	three_prime_UTR	15851159	15851514	.	-	.	Parent=Os11t0463700-01
Chr11	irgsp1_rep	mRNA	15904809	15905270	.	+	.	ID=Os11t0464600-00;Name=Os11t0464600-00;Locus_id=Os11g0464600;Note=Similar to dirigent-like protein pDIR9.;Transcript_evidence=AK370420 (DDBJ);ORF_evidence=NP_001150515.1 (RefSeq);InterPro=Plant disease resistance response protein (IPR004265);TENOR=Os11t0464600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	15904809	15904940	.	+	.	Parent=Os11t0464600-00
Chr11	irgsp1_rep	CDS	15904941	15905270	.	+	0	Parent=Os11t0464600-00
Chr11	irgsp1_rep	mRNA	15908453	15912480	.	-	.	ID=Os11t0464700-01;Name=Os11t0464700-01;Locus_id=Os11g0464700;Note=Conserved hypothetical protein.;Transcript_evidence=AK071456 (DDBJ%2C Best hit);ORF_evidence=Q7XHU7 (UniProt);NIAS_FLcDNA=J023093A06;TENOR=Os11t0464700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	15912196	15912480	.	-	.	Parent=Os11t0464700-01
Chr11	irgsp1_rep	five_prime_UTR	15909551	15909614	.	-	.	Parent=Os11t0464700-01
Chr11	irgsp1_rep	CDS	15909332	15909550	.	-	0	Parent=Os11t0464700-01
Chr11	irgsp1_rep	three_prime_UTR	15908453	15909331	.	-	.	Parent=Os11t0464700-01
Chr11	irgsp1_rep	mRNA	15956675	15960376	.	-	.	ID=Os11t0465200-01;Name=Os11t0465200-01;Locus_id=Os11g0465200;Note=Similar to Bx2-like protein.;Transcript_evidence=AK066010 (DDBJ%2C Best hit);ORF_evidence=Q2R4P8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J013043F18;TENOR=Os11t0465200-01
Chr11	irgsp1_rep	five_prime_UTR	15960334	15960376	.	-	.	Parent=Os11t0465200-01
Chr11	irgsp1_rep	CDS	15959854	15960333	.	-	0	Parent=Os11t0465200-01
Chr11	irgsp1_rep	CDS	15957986	15958420	.	-	0	Parent=Os11t0465200-01
Chr11	irgsp1_rep	CDS	15956868	15957494	.	-	0	Parent=Os11t0465200-01
Chr11	irgsp1_rep	three_prime_UTR	15956675	15956867	.	-	.	Parent=Os11t0465200-01
Chr11	irgsp1_rep	mRNA	15956696	15960222	.	-	.	ID=Os11t0465200-02;Name=Os11t0465200-02;Locus_id=Os11g0465200;Note=Similar to CytoChrome P450 family protein%2C expressed.;Transcript_evidence=AK060739 (DDBJ%2C Best hit);ORF_evidence=Q2R4P8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=001-032-C11;TENOR=Os11t0465200-02
Chr11	irgsp1_rep	CDS	15959854	15960222	.	-	0	Parent=Os11t0465200-02
Chr11	irgsp1_rep	CDS	15957986	15958420	.	-	0	Parent=Os11t0465200-02
Chr11	irgsp1_rep	CDS	15956868	15957494	.	-	0	Parent=Os11t0465200-02
Chr11	irgsp1_rep	three_prime_UTR	15956696	15956867	.	-	.	Parent=Os11t0465200-02
Chr11	irgsp1_rep	mRNA	15956883	15960293	.	+	.	ID=Os11t0465750-00;Name=Os11t0465750-00;Locus_id=Os11g0465750;Note=Hypothetical protein.;Transcript_evidence=tplb0042b08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0465750-00
Chr11	irgsp1_rep	five_prime_UTR	15956883	15957500	.	+	.	Parent=Os11t0465750-00
Chr11	irgsp1_rep	five_prime_UTR	15957992	15958046	.	+	.	Parent=Os11t0465750-00
Chr11	irgsp1_rep	CDS	15958047	15958407	.	+	0	Parent=Os11t0465750-00
Chr11	irgsp1_rep	CDS	15959841	15959980	.	+	2	Parent=Os11t0465750-00
Chr11	irgsp1_rep	three_prime_UTR	15959981	15960293	.	+	.	Parent=Os11t0465750-00
Chr11	irgsp1_rep	mRNA	16001552	16005285	.	-	.	ID=Os11t0466300-00;Name=Os11t0466300-00;Locus_id=Os11g0466300;Note=Conserved hypothetical protein.;Transcript_evidence=AK375349 (DDBJ);ORF_evidence=Q2R4P1 (UniProt);TENOR=Os11t0466300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	16005280	16005285	.	-	.	Parent=Os11t0466300-00
Chr11	irgsp1_rep	CDS	16005136	16005279	.	-	0	Parent=Os11t0466300-00
Chr11	irgsp1_rep	CDS	16003254	16003330	.	-	0	Parent=Os11t0466300-00
Chr11	irgsp1_rep	CDS	16002897	16003125	.	-	1	Parent=Os11t0466300-00
Chr11	irgsp1_rep	CDS	16002597	16002751	.	-	0	Parent=Os11t0466300-00
Chr11	irgsp1_rep	CDS	16002429	16002474	.	-	1	Parent=Os11t0466300-00
Chr11	irgsp1_rep	CDS	16002243	16002334	.	-	0	Parent=Os11t0466300-00
Chr11	irgsp1_rep	CDS	16002046	16002142	.	-	1	Parent=Os11t0466300-00
Chr11	irgsp1_rep	CDS	16001863	16001919	.	-	0	Parent=Os11t0466300-00
Chr11	irgsp1_rep	CDS	16001665	16001769	.	-	0	Parent=Os11t0466300-00
Chr11	irgsp1_rep	three_prime_UTR	16001552	16001664	.	-	.	Parent=Os11t0466300-00
Chr11	irgsp1_rep	mRNA	16004379	16007344	.	+	.	ID=Os11t0466966-01;Name=Os11t0466966-01;Locus_id=Os11g0466966;Note=Similar to OSIGBa0102N07.4 protein.;Transcript_evidence=AK070768 (DDBJ%2C Best hit);ORF_evidence=Q01MS7 (UniProt);NIAS_FLcDNA=J023073F09;TENOR=Os11t0466966-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	16004379	16006753	.	+	.	Parent=Os11t0466966-01
Chr11	irgsp1_rep	CDS	16006754	16006933	.	+	0	Parent=Os11t0466966-01
Chr11	irgsp1_rep	three_prime_UTR	16006934	16007344	.	+	.	Parent=Os11t0466966-01
Chr11	irgsp1_rep	mRNA	16004453	16004926	.	+	.	ID=Os11t0466966-02;Name=Os11t0466966-02;Locus_id=Os11g0466966;Note=Hypothetical gene.;Transcript_evidence=AK062962 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-109-D07;TENOR=Os11t0466966-02;KEGG=Os11t0466966-02
Chr11	irgsp1_rep	five_prime_UTR	16004453	16004453	.	+	.	Parent=Os11t0466966-02
Chr11	irgsp1_rep	CDS	16004454	16004765	.	+	0	Parent=Os11t0466966-02
Chr11	irgsp1_rep	three_prime_UTR	16004766	16004926	.	+	.	Parent=Os11t0466966-02
Chr11	irgsp1_rep	mRNA	16041188	16046328	.	+	.	ID=Os11t0467632-01;Name=Os11t0467632-01;Locus_id=Os11g0467632;Note=Similar to Aminotransferase-like.;Transcript_evidence=AK288741 (DDBJ%2C Best hit);ORF_evidence=C8TFJ5 (UniProt);InterPro=Aminotransferase-like%2C plant mobile domain (IPR019557);NIAS_FLcDNA=J090064C14;TENOR=Os11t0467632-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	16041188	16041344	.	+	.	Parent=Os11t0467632-01
Chr11	irgsp1_rep	CDS	16041345	16041887	.	+	0	Parent=Os11t0467632-01
Chr11	irgsp1_rep	three_prime_UTR	16041888	16046328	.	+	.	Parent=Os11t0467632-01
Chr11	irgsp1_rep	mRNA	16087020	16087847	.	-	.	ID=Os11t0467966-00;Name=Os11t0467966-00;Locus_id=Os11g0467966;Note=Hypothetical protein.;Transcript_evidence=tplb0060j07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0467966-00
Chr11	irgsp1_rep	five_prime_UTR	16087531	16087847	.	-	.	Parent=Os11t0467966-00
Chr11	irgsp1_rep	CDS	16087291	16087530	.	-	0	Parent=Os11t0467966-00
Chr11	irgsp1_rep	three_prime_UTR	16087020	16087290	.	-	.	Parent=Os11t0467966-00
Chr11	irgsp1_rep	mRNA	16129241	16132519	.	-	.	ID=Os11t0469900-00;Name=Os11t0469900-00;Locus_id=Os11g0469900;Note=Similar to Bx2-like protein.;Transcript_evidence=FP097078 (DDBJ);ORF_evidence=Q5QIS9 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);TENOR=Os11t0469900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	16131974	16132519	.	-	0	Parent=Os11t0469900-00
Chr11	irgsp1_rep	CDS	16130681	16130818	.	-	0	Parent=Os11t0469900-00
Chr11	irgsp1_rep	three_prime_UTR	16130381	16130680	.	-	.	Parent=Os11t0469900-00
Chr11	irgsp1_rep	three_prime_UTR	16129241	16130027	.	-	.	Parent=Os11t0469900-00
Chr11	irgsp1_rep	mRNA	16144914	16161474	.	-	.	ID=Os11t0470500-00;Name=Os11t0470500-00;Locus_id=Os11g0470500;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=AK369446 (DDBJ);ORF_evidence=Q2R4L1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Gnk2-homologous domain (IPR002902),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os11t0470500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	16161393	16161474	.	-	.	Parent=Os11t0470500-00
Chr11	irgsp1_rep	CDS	16160621	16161392	.	-	0	Parent=Os11t0470500-00
Chr11	irgsp1_rep	CDS	16148108	16148230	.	-	2	Parent=Os11t0470500-00
Chr11	irgsp1_rep	CDS	16147001	16147128	.	-	2	Parent=Os11t0470500-00
Chr11	irgsp1_rep	CDS	16146639	16146852	.	-	0	Parent=Os11t0470500-00
Chr11	irgsp1_rep	CDS	16145934	16146165	.	-	2	Parent=Os11t0470500-00
Chr11	irgsp1_rep	CDS	16145714	16145864	.	-	1	Parent=Os11t0470500-00
Chr11	irgsp1_rep	CDS	16145011	16145322	.	-	0	Parent=Os11t0470500-00
Chr11	irgsp1_rep	three_prime_UTR	16144914	16145010	.	-	.	Parent=Os11t0470500-00
Chr11	irgsp1_rep	mRNA	16145711	16146196	.	+	.	ID=Os11t0470550-00;Name=Os11t0470550-00;Locus_id=Os11g0470550;Note=Non-protein coding transcript.;Transcript_evidence=EU949024 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0470550-00
Chr11	irgsp1_rep	exon	16145711	16146196	.	+	.	Parent=Os11t0470550-00
Chr11	irgsp1_rep	mRNA	16163244	16164242	.	+	.	ID=Os11t0470600-01;Name=Os11t0470600-01;Locus_id=Os11g0470600;Note=Conserved hypothetical protein.;Transcript_evidence=AK062819 (DDBJ%2C Best hit);ORF_evidence=Q6Z5T3 (UniProt);NIAS_FLcDNA=001-107-E12;TENOR=Os11t0470600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	16163244	16163728	.	+	.	Parent=Os11t0470600-01
Chr11	irgsp1_rep	CDS	16163729	16164199	.	+	0	Parent=Os11t0470600-01
Chr11	irgsp1_rep	three_prime_UTR	16164200	16164242	.	+	.	Parent=Os11t0470600-01
Chr11	irgsp1_rep	mRNA	16195482	16198355	.	+	.	ID=Os11t0470966-01;Name=Os11t0470966-01;Locus_id=Os11g0470966;Note=Hypothetical conserved gene.;Transcript_evidence=AK242012 (DDBJ%2C Best hit);ORF_evidence=B8BKF1 (UniProt);NIAS_FLcDNA=J075106H22;TENOR=Os11t0470966-01;KEGG=Os11t0470966-01
Chr11	irgsp1_rep	five_prime_UTR	16195482	16196213	.	+	.	Parent=Os11t0470966-01
Chr11	irgsp1_rep	five_prime_UTR	16196258	16196628	.	+	.	Parent=Os11t0470966-01
Chr11	irgsp1_rep	CDS	16196629	16196829	.	+	0	Parent=Os11t0470966-01
Chr11	irgsp1_rep	three_prime_UTR	16196830	16198355	.	+	.	Parent=Os11t0470966-01
Chr11	irgsp1_rep	mRNA	16200965	16201669	.	-	.	ID=Os11t0471100-01;Name=Os11t0471100-01;Locus_id=Os11g0471100;Note=Hypothetical gene.;Transcript_evidence=AK106751 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-115-C10;Expression=AK106751;TENOR=Os11t0471100-01;KEGG=Os11t0471100-01
Chr11	irgsp1_rep	five_prime_UTR	16201669	16201669	.	-	.	Parent=Os11t0471100-01
Chr11	irgsp1_rep	CDS	16201450	16201668	.	-	0	Parent=Os11t0471100-01
Chr11	irgsp1_rep	three_prime_UTR	16200965	16201449	.	-	.	Parent=Os11t0471100-01
Chr11	irgsp1_rep	mRNA	16205716	16216386	.	-	.	ID=Os11t0471200-01;Name=Os11t0471200-01;Locus_id=Os11g0471200;Note=Conserved hypothetical protein.;Transcript_evidence=AK066957 (DDBJ%2C Best hit);ORF_evidence=B9GAM3 (UniProt);NIAS_FLcDNA=J013094B07;Expression=AK066957;TENOR=Os11t0471200-01;KEGG=Os11t0471200-01
Chr11	irgsp1_rep	CDS	16216337	16216386	.	-	0	Parent=Os11t0471200-01
Chr11	irgsp1_rep	CDS	16210282	16210522	.	-	1	Parent=Os11t0471200-01
Chr11	irgsp1_rep	CDS	16207925	16208041	.	-	0	Parent=Os11t0471200-01
Chr11	irgsp1_rep	CDS	16206514	16206584	.	-	0	Parent=Os11t0471200-01
Chr11	irgsp1_rep	CDS	16205841	16205991	.	-	1	Parent=Os11t0471200-01
Chr11	irgsp1_rep	three_prime_UTR	16205716	16205840	.	-	.	Parent=Os11t0471200-01
Chr11	irgsp1_rep	mRNA	16205860	16214048	.	+	.	ID=Os11t0471300-01;Name=Os11t0471300-01;Locus_id=Os11g0471300;Note=Similar to OSIGBa0145N07.3 protein.;Transcript_evidence=AK065835 (DDBJ%2C Best hit);ORF_evidence=Q01LC4 (UniProt);NIAS_FLcDNA=J013038N23;TENOR=Os11t0471300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	16205860	16207813	.	+	.	Parent=Os11t0471300-01
Chr11	irgsp1_rep	CDS	16207814	16208057	.	+	0	Parent=Os11t0471300-01
Chr11	irgsp1_rep	CDS	16208576	16208814	.	+	2	Parent=Os11t0471300-01
Chr11	irgsp1_rep	three_prime_UTR	16208815	16209360	.	+	.	Parent=Os11t0471300-01
Chr11	irgsp1_rep	three_prime_UTR	16209470	16209702	.	+	.	Parent=Os11t0471300-01
Chr11	irgsp1_rep	three_prime_UTR	16209896	16210027	.	+	.	Parent=Os11t0471300-01
Chr11	irgsp1_rep	three_prime_UTR	16213730	16214048	.	+	.	Parent=Os11t0471300-01
Chr11	irgsp1_rep	mRNA	16249461	16258885	.	-	.	ID=Os11t0472000-01;Name=Os11t0472000-01;Locus_id=Os11g0472000;CGSNL Gene Symbol=C3H63;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 63;Oryzabase Gene Symbol Synonym(s)=OsC3H63;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 63;Note=Zinc finger%2C CCCH-type domain containing protein.;Transcript_evidence=AK110345 (DDBJ%2C Best hit);ORF_evidence=Q2R4J4 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=002-164-G05;Oryzabase=8629;Expression=AK110345;TENOR=Os11t0472000-01;KEGG=Os11t0472000-01
Chr11	irgsp1_rep	five_prime_UTR	16258642	16258885	.	-	.	Parent=Os11t0472000-01
Chr11	irgsp1_rep	five_prime_UTR	16258115	16258160	.	-	.	Parent=Os11t0472000-01
Chr11	irgsp1_rep	CDS	16258096	16258114	.	-	0	Parent=Os11t0472000-01
Chr11	irgsp1_rep	CDS	16255010	16255161	.	-	2	Parent=Os11t0472000-01
Chr11	irgsp1_rep	CDS	16254436	16254498	.	-	0	Parent=Os11t0472000-01
Chr11	irgsp1_rep	CDS	16253464	16253583	.	-	0	Parent=Os11t0472000-01
Chr11	irgsp1_rep	CDS	16253052	16253348	.	-	0	Parent=Os11t0472000-01
Chr11	irgsp1_rep	CDS	16251974	16252300	.	-	0	Parent=Os11t0472000-01
Chr11	irgsp1_rep	CDS	16250800	16251066	.	-	0	Parent=Os11t0472000-01
Chr11	irgsp1_rep	three_prime_UTR	16249461	16250799	.	-	.	Parent=Os11t0472000-01
Chr11	irgsp1_rep	mRNA	16250249	16252198	.	-	.	ID=Os11t0472000-02;Name=Os11t0472000-02;Locus_id=Os11g0472000;CGSNL Gene Symbol=C3H63;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 63;Oryzabase Gene Symbol Synonym(s)=OsC3H63;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 63;Note=Hypothetical conserved gene.;Transcript_evidence=AK112047 (DDBJ%2C Best hit);ORF_evidence=B9GAM4 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=001-047-F12;Oryzabase=8629;Expression=AK112047;TENOR=Os11t0472000-02;KEGG=Os11t0472000-02
Chr11	irgsp1_rep	CDS	16251974	16252198	.	-	0	Parent=Os11t0472000-02
Chr11	irgsp1_rep	CDS	16250800	16251066	.	-	0	Parent=Os11t0472000-02
Chr11	irgsp1_rep	three_prime_UTR	16250249	16250799	.	-	.	Parent=Os11t0472000-02
Chr11	irgsp1_rep	mRNA	16275347	16279652	.	+	.	ID=Os11t0472500-01;Name=Os11t0472500-01;Locus_id=Os11g0472500;Note=Uncharacterised protein family UPF0016 domain containing protein.;Transcript_evidence=AK073686 (DDBJ%2C Best hit);ORF_evidence=A2ZE50 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Uncharacterised protein family UPF0016 (IPR001727);NIAS_FLcDNA=J033057B17;Expression=AK073686;TENOR=Os11t0472500-01;KEGG=Os11t0472500-01
Chr11	irgsp1_rep	five_prime_UTR	16275347	16275527	.	+	.	Parent=Os11t0472500-01
Chr11	irgsp1_rep	CDS	16275528	16275587	.	+	0	Parent=Os11t0472500-01
Chr11	irgsp1_rep	CDS	16275689	16275751	.	+	0	Parent=Os11t0472500-01
Chr11	irgsp1_rep	CDS	16275865	16275990	.	+	0	Parent=Os11t0472500-01
Chr11	irgsp1_rep	CDS	16276134	16276232	.	+	0	Parent=Os11t0472500-01
Chr11	irgsp1_rep	CDS	16276567	16276639	.	+	0	Parent=Os11t0472500-01
Chr11	irgsp1_rep	CDS	16277253	16277338	.	+	2	Parent=Os11t0472500-01
Chr11	irgsp1_rep	CDS	16278612	16278695	.	+	0	Parent=Os11t0472500-01
Chr11	irgsp1_rep	CDS	16278931	16278990	.	+	0	Parent=Os11t0472500-01
Chr11	irgsp1_rep	CDS	16279189	16279377	.	+	0	Parent=Os11t0472500-01
Chr11	irgsp1_rep	three_prime_UTR	16279378	16279652	.	+	.	Parent=Os11t0472500-01
Chr11	irgsp1_rep	mRNA	16275479	16279579	.	+	.	ID=Os11t0472500-02;Name=Os11t0472500-02;Locus_id=Os11g0472500;Note=Uncharacterised protein family UPF0016 domain containing protein.;Transcript_evidence=AK104618 (DDBJ%2C Best hit),AK061749 (DDBJ%2C Best hit);ORF_evidence=A2ZE50 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Uncharacterised protein family UPF0016 (IPR001727);NIAS_FLcDNA=006-309-F10,001-038-G06;Expression=AK104618;TENOR=Os11t0472500-02;KEGG=Os11t0472500-02
Chr11	irgsp1_rep	five_prime_UTR	16275479	16275527	.	+	.	Parent=Os11t0472500-02
Chr11	irgsp1_rep	CDS	16275528	16275587	.	+	0	Parent=Os11t0472500-02
Chr11	irgsp1_rep	CDS	16275689	16275751	.	+	0	Parent=Os11t0472500-02
Chr11	irgsp1_rep	CDS	16275865	16275990	.	+	0	Parent=Os11t0472500-02
Chr11	irgsp1_rep	CDS	16276134	16276232	.	+	0	Parent=Os11t0472500-02
Chr11	irgsp1_rep	CDS	16276567	16276639	.	+	0	Parent=Os11t0472500-02
Chr11	irgsp1_rep	CDS	16277253	16277338	.	+	2	Parent=Os11t0472500-02
Chr11	irgsp1_rep	CDS	16278612	16278695	.	+	0	Parent=Os11t0472500-02
Chr11	irgsp1_rep	CDS	16278931	16278990	.	+	0	Parent=Os11t0472500-02
Chr11	irgsp1_rep	CDS	16279189	16279377	.	+	0	Parent=Os11t0472500-02
Chr11	irgsp1_rep	three_prime_UTR	16279378	16279579	.	+	.	Parent=Os11t0472500-02
Chr11	irgsp1_rep	mRNA	16281677	16282722	.	+	.	ID=Os11t0472600-00;Name=Os11t0472600-00;Locus_id=Os11g0472600;Note=Similar to P21-Rho-binding domain containing protein.;Transcript_evidence=CT835642 (DDBJ%2C Best hit);ORF_evidence=Q2R4J0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=PAK-box/P21-Rho-binding (IPR000095);TENOR=Os11t0472600-00;KEGG=Os11t0472600-00
Chr11	irgsp1_rep	five_prime_UTR	16281677	16281778	.	+	.	Parent=Os11t0472600-00
Chr11	irgsp1_rep	CDS	16281779	16281832	.	+	0	Parent=Os11t0472600-00
Chr11	irgsp1_rep	CDS	16281842	16281890	.	+	0	Parent=Os11t0472600-00
Chr11	irgsp1_rep	CDS	16282146	16282546	.	+	2	Parent=Os11t0472600-00
Chr11	irgsp1_rep	three_prime_UTR	16282547	16282722	.	+	.	Parent=Os11t0472600-00
Chr11	irgsp1_rep	mRNA	16305713	16309451	.	+	.	ID=Os11t0473000-01;Name=Os11t0473000-01;Locus_id=Os11g0473000;Note=Similar to ER lumen protein retaining receptor (HDEL receptor) (PGP169-12).;Transcript_evidence=AK104759 (DDBJ%2C Best hit),AK060156 (DDBJ%2C Best hit);ORF_evidence=A3CB63 (UniProt);GO=Biological Process: protein retention in ER lumen (GO:0006621),Cellular Component: integral to membrane (GO:0016021),Molecular Function: ER retention sequence binding (GO:0046923);InterPro=ER lumen protein retaining receptor (IPR000133);NIAS_FLcDNA=001-038-G11,006-310-F12;Expression=AK104759;TENOR=Os11t0473000-01;KEGG=Os11t0473000-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	16305713	16305801	.	+	.	Parent=Os11t0473000-01
Chr11	irgsp1_rep	CDS	16305802	16305892	.	+	0	Parent=Os11t0473000-01
Chr11	irgsp1_rep	CDS	16307672	16307937	.	+	2	Parent=Os11t0473000-01
Chr11	irgsp1_rep	CDS	16308390	16308505	.	+	0	Parent=Os11t0473000-01
Chr11	irgsp1_rep	CDS	16308790	16308863	.	+	1	Parent=Os11t0473000-01
Chr11	irgsp1_rep	CDS	16308947	16309010	.	+	2	Parent=Os11t0473000-01
Chr11	irgsp1_rep	CDS	16309090	16309126	.	+	1	Parent=Os11t0473000-01
Chr11	irgsp1_rep	three_prime_UTR	16309127	16309451	.	+	.	Parent=Os11t0473000-01
Chr11	irgsp1_rep	mRNA	16305737	16309493	.	+	.	ID=Os11t0473000-02;Name=Os11t0473000-02;Locus_id=Os11g0473000;Note=Similar to ER lumen protein retaining receptor (HDEL receptor) (PGP169-12).;Transcript_evidence=AK065994 (DDBJ%2C Best hit);ORF_evidence=A3CB63 (UniProt);GO=Biological Process: protein retention in ER lumen (GO:0006621),Cellular Component: integral to membrane (GO:0016021),Molecular Function: ER retention sequence binding (GO:0046923);InterPro=ER lumen protein retaining receptor (IPR000133);NIAS_FLcDNA=J013049N15;Expression=AK065994;TENOR=Os11t0473000-02;KEGG=Os11t0473000-02;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	16305737	16305801	.	+	.	Parent=Os11t0473000-02
Chr11	irgsp1_rep	CDS	16305802	16305892	.	+	0	Parent=Os11t0473000-02
Chr11	irgsp1_rep	CDS	16307672	16307937	.	+	2	Parent=Os11t0473000-02
Chr11	irgsp1_rep	CDS	16308390	16308505	.	+	0	Parent=Os11t0473000-02
Chr11	irgsp1_rep	CDS	16308790	16308863	.	+	1	Parent=Os11t0473000-02
Chr11	irgsp1_rep	CDS	16308947	16309010	.	+	2	Parent=Os11t0473000-02
Chr11	irgsp1_rep	CDS	16309090	16309126	.	+	1	Parent=Os11t0473000-02
Chr11	irgsp1_rep	three_prime_UTR	16309127	16309493	.	+	.	Parent=Os11t0473000-02
Chr11	irgsp1_rep	mRNA	16309611	16312110	.	-	.	ID=Os11t0473100-01;Name=Os11t0473100-01;Locus_id=Os11g0473100;Oryzabase Gene Symbol Synonym(s)=MAT1;Oryzabase Gene Name Synonym(s)=MENAGE A TROIS 1%2C MAT1 assembly factor;Note=Cdk-activating kinase assembly factor (MAT1) family protein.;Transcript_evidence=AK065754 (DDBJ%2C Best hit);ORF_evidence=NP_001150873.1 (RefSeq);GO=Biological Process: cell cycle (GO:0007049),Cellular Component: nucleus (GO:0005634);InterPro=Cdk-activating kinase assembly factor (MAT1) (IPR004575),Cdk-activating kinase assembly factor MAT1%2C centre (IPR015877);NIAS_FLcDNA=J013038D14;Oryzabase=21064;Expression=AK065754;TENOR=Os11t0473100-01;KEGG=Os11t0473100-01
Chr11	irgsp1_rep	five_prime_UTR	16311898	16312110	.	-	.	Parent=Os11t0473100-01
Chr11	irgsp1_rep	CDS	16311815	16311897	.	-	0	Parent=Os11t0473100-01
Chr11	irgsp1_rep	CDS	16311614	16311687	.	-	1	Parent=Os11t0473100-01
Chr11	irgsp1_rep	CDS	16311393	16311496	.	-	2	Parent=Os11t0473100-01
Chr11	irgsp1_rep	CDS	16311189	16311257	.	-	0	Parent=Os11t0473100-01
Chr11	irgsp1_rep	CDS	16309943	16310200	.	-	0	Parent=Os11t0473100-01
Chr11	irgsp1_rep	three_prime_UTR	16309611	16309942	.	-	.	Parent=Os11t0473100-01
Chr11	irgsp1_rep	mRNA	16316873	16321329	.	+	.	ID=Os11t0473200-01;Name=Os11t0473200-01;Locus_id=Os11g0473200;RAP-DB Gene Symbol Synonym(s)=FLA%2C OsUBP5;RAP-DB Gene Name Synonym(s)=flower and leaf color aberrant;CGSNL Gene Symbol=FLA;CGSNL Gene Name=FLOWER AND LEAF COLOR ABERRANT;Oryzabase Gene Symbol Synonym(s)=UBP4-5%2C OsUBP4-5%2C OsUBP5%2C UBP5%2C OsFLA;Oryzabase Gene Name Synonym(s)=ubiquitin-specific processing protease 4-5%2C flower and leaf color aberrant%2C Ubiquitin-specific protease 5;Note=Homolog of ubiquitin-specific protease%2C Development of floral organs and chloroplast;Transcript_evidence=AK106730;ORF_evidence=Q2R4I5;GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Biological Process: protein deubiquitination (GO:0016579),Molecular Function: thiol-dependent ubiquitin-specific protease activity (GO:0004843),Molecular Function: thiol-dependent ubiquitinyl hydrolase activity (GO:0036459);InterPro=DUSP-like superfamily (IPR035927),Papain-like cysteine peptidase superfamily (IPR038765),Peptidase C19%2C ubiquitin-specific peptidase%2C DUSP domain (IPR006615),Ubiquitin specific protease domain (IPR028889),Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase (IPR001394),Ubiquitin specific protease%2C conserved site (IPR018200);NIAS_FLcDNA=002-114-H09;Manual Curation=October 22%2C 2020;Literature_PMID=30603810;Oryzabase=22880;Expression=AK106730;TENOR=Os11t0473200-01;KEGG=Os11t0473200-01 (EC:3.1.2.15);Subcellular location=cell membrane (GO:0005886)
Chr11	irgsp1_rep	five_prime_UTR	16316873	16317120	.	+	.	Parent=Os11t0473200-01
Chr11	irgsp1_rep	CDS	16317121	16317263	.	+	0	Parent=Os11t0473200-01
Chr11	irgsp1_rep	CDS	16318451	16318693	.	+	1	Parent=Os11t0473200-01
Chr11	irgsp1_rep	CDS	16319484	16319628	.	+	1	Parent=Os11t0473200-01
Chr11	irgsp1_rep	CDS	16319850	16319909	.	+	0	Parent=Os11t0473200-01
Chr11	irgsp1_rep	CDS	16319992	16320087	.	+	0	Parent=Os11t0473200-01
Chr11	irgsp1_rep	CDS	16320267	16320728	.	+	0	Parent=Os11t0473200-01
Chr11	irgsp1_rep	three_prime_UTR	16320729	16321329	.	+	.	Parent=Os11t0473200-01
Chr11	irgsp1_rep	mRNA	16320525	16324032	.	-	.	ID=Os11t0473275-00;Name=Os11t0473275-00;Locus_id=Os11g0473275;Note=Hypothetical protein.;Transcript_evidence=tplb0053f14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0473275-00
Chr11	irgsp1_rep	five_prime_UTR	16323767	16324032	.	-	.	Parent=Os11t0473275-00
Chr11	irgsp1_rep	five_prime_UTR	16322890	16323182	.	-	.	Parent=Os11t0473275-00
Chr11	irgsp1_rep	CDS	16322620	16322889	.	-	0	Parent=Os11t0473275-00
Chr11	irgsp1_rep	three_prime_UTR	16322619	16322619	.	-	.	Parent=Os11t0473275-00
Chr11	irgsp1_rep	three_prime_UTR	16322027	16322522	.	-	.	Parent=Os11t0473275-00
Chr11	irgsp1_rep	three_prime_UTR	16321656	16321844	.	-	.	Parent=Os11t0473275-00
Chr11	irgsp1_rep	three_prime_UTR	16321447	16321577	.	-	.	Parent=Os11t0473275-00
Chr11	irgsp1_rep	three_prime_UTR	16320525	16320690	.	-	.	Parent=Os11t0473275-00
Chr11	irgsp1_rep	mRNA	16324255	16325115	.	+	.	ID=Os11t0473350-00;Name=Os11t0473350-00;Locus_id=Os11g0473350;CGSNL Gene Symbol=UBP4-6;CGSNL Gene Name=UBIQUITIN-SPECIFIC PROCESSING PROTEASE 4-6;Oryzabase Gene Symbol Synonym(s)=OsUBP4-6%2C OsUBP11%2C UBP11;Oryzabase Gene Name Synonym(s)=ubiquitin-specific processing protease 4-6%2C Ubiquitin-specific protease 11;Note=Similar to Ubiquitin carboxyl-terminal hydrolase.;Transcript_evidence=CT835620 (DDBJ%2C Best hit);ORF_evidence=B9GAM6 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Molecular Function: ubiquitin thiolesterase activity (GO:0004221);InterPro=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (IPR001394);Oryzabase=22881;TENOR=Os11t0473350-00;KEGG=Os11t0473350-00 (EC:3.1.2.15)
Chr11	irgsp1_rep	five_prime_UTR	16324255	16324255	.	+	.	Parent=Os11t0473350-00
Chr11	irgsp1_rep	CDS	16324256	16324423	.	+	0	Parent=Os11t0473350-00
Chr11	irgsp1_rep	three_prime_UTR	16324424	16325115	.	+	.	Parent=Os11t0473350-00
Chr11	irgsp1_rep	mRNA	16354461	16356407	.	+	.	ID=Os11t0473832-00;Name=Os11t0473832-00;Locus_id=Os11g0473832;Note=Similar to Serine decarboxylase.;Transcript_evidence=EU947814 (DDBJ);ORF_evidence=Q9SXL2 (UniProt);GO=Biological Process: carboxylic acid metabolic process (GO:0019752),Molecular Function: catalytic activity (GO:0003824),Molecular Function: carboxy-lyase activity (GO:0016831),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent decarboxylase (IPR002129),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);TENOR=Os11t0473832-00
Chr11	irgsp1_rep	CDS	16354461	16354762	.	+	0	Parent=Os11t0473832-00
Chr11	irgsp1_rep	CDS	16355166	16355359	.	+	1	Parent=Os11t0473832-00
Chr11	irgsp1_rep	CDS	16355474	16355607	.	+	2	Parent=Os11t0473832-00
Chr11	irgsp1_rep	CDS	16355820	16356407	.	+	0	Parent=Os11t0473832-00
Chr11	irgsp1_rep	mRNA	16358139	16359958	.	+	.	ID=Os11t0474000-01;Name=Os11t0474000-01;Locus_id=Os11g0474000;Note=Similar to OSIGBa0140O07.1 protein.;Transcript_evidence=AK067445 (DDBJ%2C Best hit);ORF_evidence=Q01J42 (UniProt);NIAS_FLcDNA=J013103N11;Expression=AK067445;TENOR=Os11t0474000-01;KEGG=Os11t0474000-01
Chr11	irgsp1_rep	five_prime_UTR	16358139	16358360	.	+	.	Parent=Os11t0474000-01
Chr11	irgsp1_rep	CDS	16358361	16358603	.	+	0	Parent=Os11t0474000-01
Chr11	irgsp1_rep	three_prime_UTR	16358604	16359958	.	+	.	Parent=Os11t0474000-01
Chr11	irgsp1_rep	mRNA	16366474	16367249	.	-	.	ID=Os11t0474100-01;Name=Os11t0474100-01;Locus_id=Os11g0474100;Note=Conserved hypothetical protein.;Transcript_evidence=AK065906 (DDBJ%2C Best hit);ORF_evidence=B9GAM7 (UniProt);NIAS_FLcDNA=J013050M06;TENOR=Os11t0474100-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	16367060	16367249	.	-	.	Parent=Os11t0474100-01
Chr11	irgsp1_rep	CDS	16366595	16367059	.	-	0	Parent=Os11t0474100-01
Chr11	irgsp1_rep	three_prime_UTR	16366474	16366594	.	-	.	Parent=Os11t0474100-01
Chr11	irgsp1_rep	mRNA	16370016	16372484	.	+	.	ID=Os11t0474400-01;Name=Os11t0474400-01;Locus_id=Os11g0474400;Note=Conserved hypothetical protein.;Transcript_evidence=AK067929 (DDBJ%2C Best hit);ORF_evidence=Q2R4H8 (UniProt);NIAS_FLcDNA=J013126E13;Expression=AK067929;TENOR=Os11t0474400-01;KEGG=Os11t0474400-01
Chr11	irgsp1_rep	five_prime_UTR	16370016	16370137	.	+	.	Parent=Os11t0474400-01
Chr11	irgsp1_rep	CDS	16370138	16370304	.	+	0	Parent=Os11t0474400-01
Chr11	irgsp1_rep	CDS	16370585	16370641	.	+	1	Parent=Os11t0474400-01
Chr11	irgsp1_rep	CDS	16370786	16370816	.	+	1	Parent=Os11t0474400-01
Chr11	irgsp1_rep	three_prime_UTR	16370817	16370870	.	+	.	Parent=Os11t0474400-01
Chr11	irgsp1_rep	three_prime_UTR	16371023	16371077	.	+	.	Parent=Os11t0474400-01
Chr11	irgsp1_rep	three_prime_UTR	16371750	16372484	.	+	.	Parent=Os11t0474400-01
Chr11	irgsp1_rep	mRNA	16385469	16388513	.	+	.	ID=Os11t0474450-01;Name=Os11t0474450-01;Locus_id=Os11g0474450;Note=Hypothetical gene.;Transcript_evidence=AK288843 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090074J10;TENOR=Os11t0474450-01;KEGG=Os11t0474450-01
Chr11	irgsp1_rep	five_prime_UTR	16385469	16386072	.	+	.	Parent=Os11t0474450-01
Chr11	irgsp1_rep	CDS	16386073	16386342	.	+	0	Parent=Os11t0474450-01
Chr11	irgsp1_rep	three_prime_UTR	16386343	16388513	.	+	.	Parent=Os11t0474450-01
Chr11	irgsp1_rep	mRNA	16385625	16387121	.	-	.	ID=Os11t0474500-00;Name=Os11t0474500-00;Locus_id=Os11g0474500;Note=NB-ARC domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001176536.1 (RefSeq);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os11t0474500-00;KEGG=Os11t0474500-00
Chr11	irgsp1_rep	CDS	16385625	16387121	.	-	0	Parent=Os11t0474500-00
Chr11	irgsp1_rep	mRNA	16394809	16395386	.	-	.	ID=Os11t0474566-01;Name=Os11t0474566-01;Locus_id=Os11g0474566;Note=Hypothetical conserved gene.;Transcript_evidence=AK240889 (DDBJ%2C Best hit);ORF_evidence=Q2R4H3 (UniProt);NIAS_FLcDNA=J065029I24;TENOR=Os11t0474566-01;KEGG=Os11t0474566-01
Chr11	irgsp1_rep	five_prime_UTR	16395196	16395386	.	-	.	Parent=Os11t0474566-01
Chr11	irgsp1_rep	CDS	16394872	16395195	.	-	0	Parent=Os11t0474566-01
Chr11	irgsp1_rep	three_prime_UTR	16394809	16394871	.	-	.	Parent=Os11t0474566-01
Chr11	irgsp1_rep	mRNA	16435035	16440299	.	-	.	ID=Os11t0474800-01;Name=Os11t0474800-01;Locus_id=Os11g0474800;CGSNL Gene Symbol=KS8;CGSNL Gene Name=ENT-KAURENE SYNTHASE 8;Oryzabase Gene Symbol Synonym(s)=OsKS8%2C KS8%2C KSL8%2C OsKSL8%2C DTC2%2C OsDTC2%2C OsDTC2/OsKS8%2C OsTPS32;Oryzabase Gene Name Synonym(s)=rice ent-kaurene synthase8%2C Ent-kaurene synthase 8%2C Stemar-13-ene synthase%2C Stemarene synthase%2C syn-Stemarene synthase%2C Ent-kaurene synthase-like 8%2C Diterpene cyclase 2%2C terpene synthase 32;Note=Similar to Isoform 2 of Stemar-13-ene synthase.;Transcript_evidence=AK108710 (DDBJ%2C Best hit);ORF_evidence=Q6BDZ9-2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: lyase activity (GO:0016829);InterPro=Terpene synthase-like (IPR001906),Terpene synthase%2C metal-binding domain (IPR005630),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930),Terpenoid synthase (IPR008949);NIAS_FLcDNA=002-150-A11;Oryzabase=3138;Expression=AK108710;TENOR=Os11t0474800-01;KEGG=Os11t0474800-01
Chr11	irgsp1_rep	five_prime_UTR	16440299	16440299	.	-	.	Parent=Os11t0474800-01
Chr11	irgsp1_rep	CDS	16440131	16440298	.	-	0	Parent=Os11t0474800-01
Chr11	irgsp1_rep	CDS	16438762	16438874	.	-	0	Parent=Os11t0474800-01
Chr11	irgsp1_rep	CDS	16438572	16438667	.	-	1	Parent=Os11t0474800-01
Chr11	irgsp1_rep	CDS	16438281	16438496	.	-	1	Parent=Os11t0474800-01
Chr11	irgsp1_rep	CDS	16437610	16437751	.	-	1	Parent=Os11t0474800-01
Chr11	irgsp1_rep	CDS	16435262	16435867	.	-	0	Parent=Os11t0474800-01
Chr11	irgsp1_rep	three_prime_UTR	16435035	16435261	.	-	.	Parent=Os11t0474800-01
Chr11	irgsp1_rep	mRNA	16441481	16442206	.	-	.	ID=Os11t0474900-00;Name=Os11t0474900-00;Locus_id=Os11g0474900;Note=Similar to Stemar-13-ene synthase.;Transcript_evidence=ab initio prediction;ORF_evidence=Q6BDZ9 (UniProt);InterPro=Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930);TENOR=Os11t0474900-00
Chr11	irgsp1_rep	CDS	16442095	16442206	.	-	0	Parent=Os11t0474900-00
Chr11	irgsp1_rep	CDS	16441918	16441982	.	-	2	Parent=Os11t0474900-00
Chr11	irgsp1_rep	CDS	16441481	16441822	.	-	0	Parent=Os11t0474900-00
Chr11	irgsp1_rep	mRNA	16445073	16449180	.	-	.	ID=Os11t0475000-01;Name=Os11t0475000-01;Locus_id=Os11g0475000;Note=Hypothetical protein.;Transcript_evidence=AK120736 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023003H05;Expression=AK120736;TENOR=Os11t0475000-01;KEGG=Os11t0475000-01
Chr11	irgsp1_rep	five_prime_UTR	16446937	16449180	.	-	.	Parent=Os11t0475000-01
Chr11	irgsp1_rep	CDS	16446637	16446936	.	-	0	Parent=Os11t0475000-01
Chr11	irgsp1_rep	three_prime_UTR	16445073	16446636	.	-	.	Parent=Os11t0475000-01
Chr11	irgsp1_rep	mRNA	16457145	16462189	.	-	.	ID=Os11t0475200-00;Name=Os11t0475200-00;Locus_id=Os11g0475200;Note=Non-protein coding transcript.;Transcript_evidence=CT835688 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os11t0475200-00
Chr11	irgsp1_rep	exon	16462112	16462189	.	-	.	Parent=Os11t0475200-00
Chr11	irgsp1_rep	exon	16461986	16462104	.	-	.	Parent=Os11t0475200-00
Chr11	irgsp1_rep	exon	16457145	16457472	.	-	.	Parent=Os11t0475200-00
Chr11	irgsp1_rep	mRNA	16506997	16507900	.	-	.	ID=Os11t0475500-01;Name=Os11t0475500-01;Locus_id=Os11g0475500;Note=Conserved hypothetical protein.;Transcript_evidence=AK102516 (DDBJ%2C Best hit);ORF_evidence=Q2R4G1 (UniProt);NIAS_FLcDNA=J033095L01;TENOR=Os11t0475500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	16507725	16507900	.	-	.	Parent=Os11t0475500-01
Chr11	irgsp1_rep	CDS	16507347	16507724	.	-	0	Parent=Os11t0475500-01
Chr11	irgsp1_rep	three_prime_UTR	16506997	16507346	.	-	.	Parent=Os11t0475500-01
Chr11	irgsp1_rep	mRNA	16510126	16512578	.	+	.	ID=Os11t0475600-01;Name=Os11t0475600-01;Locus_id=Os11g0475600;RAP-DB Gene Symbol Synonym(s)=HWH2%2C hwh2;RAP-DB Gene Name Synonym(s)=HYBRID WEAKNESS H2%2C hybrid weakness h2;CGSNL Gene Symbol=HWH2;CGSNL Gene Name=HYBRID WEAKNESS H2;Oryzabase Gene Symbol Synonym(s)=hwh2;Oryzabase Gene Name Synonym(s)=hybrid weakness h2;Note=Hexose transporter%2C Hybrid breakdown (HB);Transcript_evidence=AK240645 (Genbank);ORF_evidence=Q2R4G0 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J023003B03;Manual Curation=July 10%2C 2009;Literature_PMID=18335199;Oryzabase=8203;TENOR=Os11t0475600-01;KEGG=Os11t0475600-01
Chr11	irgsp1_rep	five_prime_UTR	16510126	16510175	.	+	.	Parent=Os11t0475600-01
Chr11	irgsp1_rep	CDS	16510176	16512449	.	+	0	Parent=Os11t0475600-01
Chr11	irgsp1_rep	three_prime_UTR	16512450	16512578	.	+	.	Parent=Os11t0475600-01
Chr11	irgsp1_rep	mRNA	16627019	16631252	.	-	.	ID=Os11t0476333-01;Name=Os11t0476333-01;Locus_id=Os11g0476333;Note=Hypothetical gene.;Transcript_evidence=AK288190 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090006H24;TENOR=Os11t0476333-01;KEGG=Os11t0476333-01
Chr11	irgsp1_rep	CDS	16631019	16631252	.	-	0	Parent=Os11t0476333-01
Chr11	irgsp1_rep	three_prime_UTR	16627536	16631018	.	-	.	Parent=Os11t0476333-01
Chr11	irgsp1_rep	three_prime_UTR	16627019	16627448	.	-	.	Parent=Os11t0476333-01
Chr11	irgsp1_rep	mRNA	16638643	16639079	.	-	.	ID=Os11t0476667-00;Name=Os11t0476667-00;Locus_id=Os11g0476667;Note=Hypothetical protein.;Transcript_evidence=AK372466 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0476667-00
Chr11	irgsp1_rep	CDS	16638643	16639079	.	-	0	Parent=Os11t0476667-00
Chr11	irgsp1_rep	mRNA	16708780	16730706	.	+	.	ID=Os11t0477400-01;Name=Os11t0477400-01;Locus_id=Os11g0477400;Note=Hypothetical conserved gene.;Transcript_evidence=AK068160 (DDBJ%2C Best hit);ORF_evidence=Q25A75 (UniProt);NIAS_FLcDNA=J013134D23;Oryzabase=22571;Expression=AK068160;TENOR=Os11t0477400-01;KEGG=Os11t0477400-01
Chr11	irgsp1_rep	five_prime_UTR	16708780	16709122	.	+	.	Parent=Os11t0477400-01
Chr11	irgsp1_rep	five_prime_UTR	16709516	16709611	.	+	.	Parent=Os11t0477400-01
Chr11	irgsp1_rep	five_prime_UTR	16709704	16709755	.	+	.	Parent=Os11t0477400-01
Chr11	irgsp1_rep	CDS	16730203	16730385	.	+	0	Parent=Os11t0477400-01
Chr11	irgsp1_rep	three_prime_UTR	16730386	16730706	.	+	.	Parent=Os11t0477400-01
Chr11	irgsp1_rep	mRNA	16708783	16734836	.	+	.	ID=Os11t0477400-02;Name=Os11t0477400-02;Locus_id=Os11g0477400;Note=Conserved hypothetical protein.;Transcript_evidence=AK070896 (DDBJ%2C Best hit);ORF_evidence=Q2R4D0 (UniProt);NIAS_FLcDNA=J023071A02;Oryzabase=22571;TENOR=Os11t0477400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	16708783	16709122	.	+	.	Parent=Os11t0477400-02
Chr11	irgsp1_rep	five_prime_UTR	16709529	16709611	.	+	.	Parent=Os11t0477400-02
Chr11	irgsp1_rep	five_prime_UTR	16709704	16709755	.	+	.	Parent=Os11t0477400-02
Chr11	irgsp1_rep	five_prime_UTR	16730203	16730336	.	+	.	Parent=Os11t0477400-02
Chr11	irgsp1_rep	CDS	16730337	16730341	.	+	0	Parent=Os11t0477400-02
Chr11	irgsp1_rep	CDS	16733383	16733737	.	+	1	Parent=Os11t0477400-02
Chr11	irgsp1_rep	CDS	16733855	16734049	.	+	0	Parent=Os11t0477400-02
Chr11	irgsp1_rep	three_prime_UTR	16734050	16734106	.	+	.	Parent=Os11t0477400-02
Chr11	irgsp1_rep	three_prime_UTR	16734192	16734836	.	+	.	Parent=Os11t0477400-02
Chr11	irgsp1_rep	mRNA	16708841	16732840	.	+	.	ID=Os11t0477400-03;Name=Os11t0477400-03;Locus_id=Os11g0477400;Note=Hypothetical conserved gene.;Transcript_evidence=AK070253 (DDBJ%2C Best hit);ORF_evidence=Q2R4D0 (UniProt);NIAS_FLcDNA=J023042A07;Oryzabase=22571;Expression=AK070253;TENOR=Os11t0477400-03;KEGG=Os11t0477400-03
Chr11	irgsp1_rep	five_prime_UTR	16708841	16709122	.	+	.	Parent=Os11t0477400-03
Chr11	irgsp1_rep	five_prime_UTR	16709529	16709611	.	+	.	Parent=Os11t0477400-03
Chr11	irgsp1_rep	five_prime_UTR	16709704	16709755	.	+	.	Parent=Os11t0477400-03
Chr11	irgsp1_rep	CDS	16731886	16732587	.	+	0	Parent=Os11t0477400-03
Chr11	irgsp1_rep	three_prime_UTR	16732588	16732840	.	+	.	Parent=Os11t0477400-03
Chr11	irgsp1_rep	mRNA	16743419	16744480	.	+	.	ID=Os11t0479000-01;Name=Os11t0479000-01;Locus_id=Os11g0479000;Note=Conserved hypothetical protein.;Transcript_evidence=AK107976 (DDBJ%2C Best hit);ORF_evidence=A2ZE76 (UniProt);NIAS_FLcDNA=002-135-E01;Expression=AK107976;TENOR=Os11t0479000-01;KEGG=Os11t0479000-01
Chr11	irgsp1_rep	five_prime_UTR	16743419	16743422	.	+	.	Parent=Os11t0479000-01
Chr11	irgsp1_rep	CDS	16743423	16743480	.	+	0	Parent=Os11t0479000-01
Chr11	irgsp1_rep	CDS	16743874	16744211	.	+	2	Parent=Os11t0479000-01
Chr11	irgsp1_rep	three_prime_UTR	16744212	16744480	.	+	.	Parent=Os11t0479000-01
Chr11	irgsp1_rep	mRNA	16751786	16758978	.	-	.	ID=Os11t0479100-00;Name=Os11t0479100-00;Locus_id=Os11g0479100;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=AK334711 (DDBJ);ORF_evidence=Q2R4C6 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182),Leucine-rich repeat%2C typical subtype (IPR003591);TENOR=Os11t0479100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	16758977	16758978	.	-	.	Parent=Os11t0479100-00
Chr11	irgsp1_rep	CDS	16757951	16758976	.	-	0	Parent=Os11t0479100-00
Chr11	irgsp1_rep	CDS	16751786	16753999	.	-	0	Parent=Os11t0479100-00
Chr11	irgsp1_rep	mRNA	16768640	16772209	.	+	.	ID=Os11t0479232-01;Name=Os11t0479232-01;Locus_id=Os11g0479232;Note=Similar to Gpi16 subunit%2C GPI transamidase component family protein%2C expressed.;Transcript_evidence=AK241257 (DDBJ%2C Best hit);ORF_evidence=Q2R4C3 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021),Cellular Component: GPI-anchor transamidase complex (GO:0042765);InterPro=Gpi16 subunit%2C GPI transamidase component (IPR007245);NIAS_FLcDNA=J065130O16;TENOR=Os11t0479232-01;KEGG=Os11t0479232-01
Chr11	irgsp1_rep	five_prime_UTR	16768640	16768640	.	+	.	Parent=Os11t0479232-01
Chr11	irgsp1_rep	CDS	16768641	16768973	.	+	0	Parent=Os11t0479232-01
Chr11	irgsp1_rep	CDS	16769082	16769231	.	+	0	Parent=Os11t0479232-01
Chr11	irgsp1_rep	CDS	16769345	16769525	.	+	0	Parent=Os11t0479232-01
Chr11	irgsp1_rep	CDS	16771790	16771959	.	+	2	Parent=Os11t0479232-01
Chr11	irgsp1_rep	three_prime_UTR	16771960	16772209	.	+	.	Parent=Os11t0479232-01
Chr11	irgsp1_rep	mRNA	16774878	16780258	.	+	.	ID=Os11t0479300-01;Name=Os11t0479300-01;Locus_id=Os11g0479300;Note=Similar to OSIGBa0135C09.4 protein.;Transcript_evidence=AK099761 (DDBJ%2C Best hit);ORF_evidence=A0B9X8 (UniProt);NIAS_FLcDNA=J013093N23;TENOR=Os11t0479300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	16774878	16775038	.	+	.	Parent=Os11t0479300-01
Chr11	irgsp1_rep	CDS	16775039	16775347	.	+	0	Parent=Os11t0479300-01
Chr11	irgsp1_rep	CDS	16775481	16775576	.	+	0	Parent=Os11t0479300-01
Chr11	irgsp1_rep	CDS	16776253	16776285	.	+	0	Parent=Os11t0479300-01
Chr11	irgsp1_rep	three_prime_UTR	16776286	16776364	.	+	.	Parent=Os11t0479300-01
Chr11	irgsp1_rep	three_prime_UTR	16776572	16776724	.	+	.	Parent=Os11t0479300-01
Chr11	irgsp1_rep	three_prime_UTR	16778029	16778112	.	+	.	Parent=Os11t0479300-01
Chr11	irgsp1_rep	three_prime_UTR	16778200	16778328	.	+	.	Parent=Os11t0479300-01
Chr11	irgsp1_rep	three_prime_UTR	16778620	16778799	.	+	.	Parent=Os11t0479300-01
Chr11	irgsp1_rep	three_prime_UTR	16779312	16779428	.	+	.	Parent=Os11t0479300-01
Chr11	irgsp1_rep	three_prime_UTR	16779523	16780258	.	+	.	Parent=Os11t0479300-01
Chr11	irgsp1_rep	mRNA	16781662	16782881	.	-	.	ID=Os11t0479400-01;Name=Os11t0479400-01;Locus_id=Os11g0479400;Note=Similar to Leucine Rich Repeat family protein.;Transcript_evidence=AK242099 (DDBJ%2C Best hit);ORF_evidence=Q2R4C1 (UniProt);NIAS_FLcDNA=J075143L06;TENOR=Os11t0479400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	16782880	16782881	.	-	.	Parent=Os11t0479400-01
Chr11	irgsp1_rep	CDS	16782294	16782879	.	-	0	Parent=Os11t0479400-01
Chr11	irgsp1_rep	CDS	16782053	16782066	.	-	2	Parent=Os11t0479400-01
Chr11	irgsp1_rep	three_prime_UTR	16781662	16782052	.	-	.	Parent=Os11t0479400-01
Chr11	irgsp1_rep	mRNA	16807647	16826653	.	+	.	ID=Os11t0480000-01;Name=Os11t0480000-01;Locus_id=Os11g0480000;Note=NB-ARC domain containing protein.;Transcript_evidence=AK064142 (DDBJ%2C Best hit);ORF_evidence=Q2R4B6 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=002-103-B04;Expression=AK064142;TENOR=Os11t0480000-01;KEGG=Os11t0480000-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	16807647	16807960	.	+	.	Parent=Os11t0480000-01
Chr11	irgsp1_rep	five_prime_UTR	16808151	16808173	.	+	.	Parent=Os11t0480000-01
Chr11	irgsp1_rep	CDS	16808174	16808853	.	+	0	Parent=Os11t0480000-01
Chr11	irgsp1_rep	CDS	16824303	16824519	.	+	1	Parent=Os11t0480000-01
Chr11	irgsp1_rep	CDS	16825099	16826334	.	+	0	Parent=Os11t0480000-01
Chr11	irgsp1_rep	three_prime_UTR	16826335	16826653	.	+	.	Parent=Os11t0480000-01
Chr11	irgsp1_rep	mRNA	16860235	16864216	.	+	.	ID=Os11t0481150-00;Name=Os11t0481150-00;Locus_id=Os11g0481150;Note=NB-ARC domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R4B0 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os11t0481150-00;KEGG=Os11t0481150-00
Chr11	irgsp1_rep	CDS	16860235	16863568	.	+	0	Parent=Os11t0481150-00
Chr11	irgsp1_rep	CDS	16863717	16864216	.	+	2	Parent=Os11t0481150-00
Chr11	irgsp1_rep	mRNA	16866331	16872004	.	-	.	ID=Os11t0481200-01;Name=Os11t0481200-01;Locus_id=Os11g0481200;Note=Protein of unknown function DUF246%2C plant family protein.;Transcript_evidence=AK068263 (DDBJ%2C Best hit);ORF_evidence=Q2R4A9 (UniProt);InterPro=GDP-fucose protein O-fucosyltransferase (IPR019378),O-fucosyltransferase%2C plant (IPR024709);NIAS_FLcDNA=J013149N04;Expression=AK068263;TENOR=Os11t0481200-01;KEGG=Os11t0481200-01
Chr11	irgsp1_rep	five_prime_UTR	16871968	16872004	.	-	.	Parent=Os11t0481200-01
Chr11	irgsp1_rep	CDS	16871800	16871967	.	-	0	Parent=Os11t0481200-01
Chr11	irgsp1_rep	CDS	16870218	16870299	.	-	0	Parent=Os11t0481200-01
Chr11	irgsp1_rep	CDS	16870058	16870122	.	-	2	Parent=Os11t0481200-01
Chr11	irgsp1_rep	CDS	16869870	16869958	.	-	0	Parent=Os11t0481200-01
Chr11	irgsp1_rep	CDS	16868736	16868859	.	-	1	Parent=Os11t0481200-01
Chr11	irgsp1_rep	CDS	16868362	16868645	.	-	0	Parent=Os11t0481200-01
Chr11	irgsp1_rep	CDS	16867813	16867942	.	-	1	Parent=Os11t0481200-01
Chr11	irgsp1_rep	CDS	16866720	16867355	.	-	0	Parent=Os11t0481200-01
Chr11	irgsp1_rep	three_prime_UTR	16866331	16866719	.	-	.	Parent=Os11t0481200-01
Chr11	irgsp1_rep	mRNA	16885485	16886054	.	+	.	ID=Os11t0481301-01;Name=Os11t0481301-01;Locus_id=Os11g0481301;Note=Hypothetical gene.;Transcript_evidence=AK112110 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-113-F03;Expression=AK112110;TENOR=Os11t0481301-01;KEGG=Os11t0481301-01
Chr11	irgsp1_rep	five_prime_UTR	16885485	16885486	.	+	.	Parent=Os11t0481301-01
Chr11	irgsp1_rep	CDS	16885487	16885735	.	+	0	Parent=Os11t0481301-01
Chr11	irgsp1_rep	three_prime_UTR	16885736	16886054	.	+	.	Parent=Os11t0481301-01
Chr11	irgsp1_rep	mRNA	16889182	16889933	.	+	.	ID=Os11t0481500-01;Name=Os11t0481500-01;Locus_id=Os11g0481500;Note=Conserved hypothetical protein.;Transcript_evidence=AK069452 (DDBJ%2C Best hit);ORF_evidence=NP_001174264.1 (RefSeq);NIAS_FLcDNA=J023019F19;TENOR=Os11t0481500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	16889182	16889182	.	+	.	Parent=Os11t0481500-01
Chr11	irgsp1_rep	CDS	16889183	16889605	.	+	0	Parent=Os11t0481500-01
Chr11	irgsp1_rep	three_prime_UTR	16889606	16889933	.	+	.	Parent=Os11t0481500-01
Chr11	irgsp1_rep	mRNA	16897472	16899275	.	+	.	ID=Os11t0481600-01;Name=Os11t0481600-01;Locus_id=Os11g0481600;Note=Conserved hypothetical protein.;Transcript_evidence=AK109900 (DDBJ%2C Best hit);ORF_evidence=B9GAP3 (UniProt);NIAS_FLcDNA=002-149-F07;Expression=AK109900;TENOR=Os11t0481600-01;KEGG=Os11t0481600-01
Chr11	irgsp1_rep	five_prime_UTR	16897472	16897473	.	+	.	Parent=Os11t0481600-01
Chr11	irgsp1_rep	CDS	16897474	16898313	.	+	0	Parent=Os11t0481600-01
Chr11	irgsp1_rep	three_prime_UTR	16898314	16899275	.	+	.	Parent=Os11t0481600-01
Chr11	irgsp1_rep	mRNA	16917810	16919756	.	-	.	ID=Os11t0482000-01;Name=Os11t0482000-01;Locus_id=Os11g0482000;CGSNL Gene Symbol=RPS5;CGSNL Gene Name=RIBOSOMAL PROTEIN S5;Oryzabase Gene Symbol Synonym(s)=RPS5A;Oryzabase Gene Name Synonym(s)=Ribosomal protein S5%2C Ribosomal protein S5A%2C ribosomal protein small subunit 5%2C ribosomal protein small subunit 5a;Note=Similar to 40S ribosomal protein S5.;Transcript_evidence=AK103918 (DDBJ%2C Best hit),AK059558 (DDBJ%2C Best hit);ORF_evidence=B3TLN7 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: small ribosomal subunit (GO:0015935),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S7 (IPR000235),Ribosomal protein S7%2C eukaryotic/archaeal (IPR005716),Ribosomal protein S7%2C conserved site (IPR020606),Ribosomal protein S7 domain (IPR023798);NIAS_FLcDNA=001-013-A08,001-029-G10;Oryzabase=17699;TENOR=Os11t0482000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	16919648	16919756	.	-	.	Parent=Os11t0482000-01
Chr11	irgsp1_rep	CDS	16919579	16919647	.	-	0	Parent=Os11t0482000-01
Chr11	irgsp1_rep	CDS	16919221	16919492	.	-	0	Parent=Os11t0482000-01
Chr11	irgsp1_rep	CDS	16918125	16918328	.	-	1	Parent=Os11t0482000-01
Chr11	irgsp1_rep	CDS	16917985	16918039	.	-	1	Parent=Os11t0482000-01
Chr11	irgsp1_rep	three_prime_UTR	16917810	16917984	.	-	.	Parent=Os11t0482000-01
Chr11	irgsp1_rep	mRNA	16929500	16937094	.	+	.	ID=Os11t0482100-01;Name=Os11t0482100-01;Locus_id=Os11g0482100;Note=Similar to Protein transport protein Sec24-like CEF.;Transcript_evidence=AK058672 (DDBJ%2C Best hit);ORF_evidence=NP_566869.1 (RefSeq);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888),Cellular Component: COPII vesicle coat (GO:0030127);InterPro=Sec23/Sec24%2C trunk domain (IPR006896),Sec23/Sec24%2C helical domain (IPR006900),Gelsolin domain (IPR007123),Sec23/Sec24 beta-sandwich (IPR012990);NIAS_FLcDNA=001-018-H04;Expression=AK058672;TENOR=Os11t0482100-01;KEGG=Os11t0482100-01
Chr11	irgsp1_rep	five_prime_UTR	16929500	16929500	.	+	.	Parent=Os11t0482100-01
Chr11	irgsp1_rep	CDS	16929501	16929569	.	+	0	Parent=Os11t0482100-01
Chr11	irgsp1_rep	CDS	16930395	16930475	.	+	0	Parent=Os11t0482100-01
Chr11	irgsp1_rep	CDS	16930888	16930965	.	+	0	Parent=Os11t0482100-01
Chr11	irgsp1_rep	CDS	16931044	16931136	.	+	0	Parent=Os11t0482100-01
Chr11	irgsp1_rep	CDS	16931308	16931362	.	+	0	Parent=Os11t0482100-01
Chr11	irgsp1_rep	CDS	16932223	16932299	.	+	2	Parent=Os11t0482100-01
Chr11	irgsp1_rep	CDS	16932436	16932507	.	+	0	Parent=Os11t0482100-01
Chr11	irgsp1_rep	CDS	16932587	16932670	.	+	0	Parent=Os11t0482100-01
Chr11	irgsp1_rep	CDS	16933048	16933167	.	+	0	Parent=Os11t0482100-01
Chr11	irgsp1_rep	CDS	16933252	16933320	.	+	0	Parent=Os11t0482100-01
Chr11	irgsp1_rep	CDS	16934149	16934226	.	+	0	Parent=Os11t0482100-01
Chr11	irgsp1_rep	CDS	16935112	16935250	.	+	0	Parent=Os11t0482100-01
Chr11	irgsp1_rep	CDS	16935418	16935582	.	+	2	Parent=Os11t0482100-01
Chr11	irgsp1_rep	CDS	16935667	16935812	.	+	2	Parent=Os11t0482100-01
Chr11	irgsp1_rep	CDS	16935929	16936108	.	+	0	Parent=Os11t0482100-01
Chr11	irgsp1_rep	CDS	16936262	16936350	.	+	0	Parent=Os11t0482100-01
Chr11	irgsp1_rep	CDS	16936425	16936456	.	+	1	Parent=Os11t0482100-01
Chr11	irgsp1_rep	CDS	16936548	16936654	.	+	2	Parent=Os11t0482100-01
Chr11	irgsp1_rep	three_prime_UTR	16936655	16937094	.	+	.	Parent=Os11t0482100-01
Chr11	irgsp1_rep	mRNA	16935675	16937028	.	-	.	ID=Os11t0482150-00;Name=Os11t0482150-00;Locus_id=Os11g0482150;Note=Non-protein coding transcript.;Transcript_evidence=BT016902 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0482150-00
Chr11	irgsp1_rep	exon	16936522	16937028	.	-	.	Parent=Os11t0482150-00
Chr11	irgsp1_rep	exon	16936283	16936355	.	-	.	Parent=Os11t0482150-00
Chr11	irgsp1_rep	exon	16935920	16936127	.	-	.	Parent=Os11t0482150-00
Chr11	irgsp1_rep	exon	16935675	16935800	.	-	.	Parent=Os11t0482150-00
Chr11	irgsp1_rep	mRNA	16937493	16938495	.	-	.	ID=Os11t0482200-01;Name=Os11t0482200-01;Locus_id=Os11g0482200;Note=Pathogenic type III effector avirulence factor Avr cleavage site domain containing protein.;Transcript_evidence=AK062443 (DDBJ%2C Best hit);ORF_evidence=Q2R499 (UniProt);InterPro=Pathogenic type III effector avirulence factor Avr cleavage site (IPR008700);NIAS_FLcDNA=001-103-B02;TENOR=Os11t0482200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	16938495	16938495	.	-	.	Parent=Os11t0482200-01
Chr11	irgsp1_rep	CDS	16938389	16938494	.	-	0	Parent=Os11t0482200-01
Chr11	irgsp1_rep	CDS	16938246	16938331	.	-	2	Parent=Os11t0482200-01
Chr11	irgsp1_rep	CDS	16937810	16938019	.	-	0	Parent=Os11t0482200-01
Chr11	irgsp1_rep	CDS	16937650	16937682	.	-	0	Parent=Os11t0482200-01
Chr11	irgsp1_rep	three_prime_UTR	16937493	16937649	.	-	.	Parent=Os11t0482200-01
Chr11	irgsp1_rep	mRNA	16943497	16946613	.	+	.	ID=Os11t0482400-01;Name=Os11t0482400-01;Locus_id=Os11g0482400;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK066023 (DDBJ%2C Best hit);ORF_evidence=A2ZE98 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013045K04;Expression=AK066023;TENOR=Os11t0482400-01;KEGG=Os11t0482400-01
Chr11	irgsp1_rep	five_prime_UTR	16943497	16943549	.	+	.	Parent=Os11t0482400-01
Chr11	irgsp1_rep	CDS	16943550	16943654	.	+	0	Parent=Os11t0482400-01
Chr11	irgsp1_rep	CDS	16944080	16946287	.	+	0	Parent=Os11t0482400-01
Chr11	irgsp1_rep	three_prime_UTR	16946288	16946613	.	+	.	Parent=Os11t0482400-01
Chr11	irgsp1_rep	mRNA	16945282	16946600	.	+	.	ID=Os11t0482400-02;Name=Os11t0482400-02;Locus_id=Os11g0482400;Note=Hypothetical conserved gene.;Transcript_evidence=AK062180 (DDBJ%2C Best hit);ORF_evidence=A3CBA4 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-046-D08;Expression=AK062180;TENOR=Os11t0482400-02;KEGG=Os11t0482400-02
Chr11	irgsp1_rep	five_prime_UTR	16945282	16945282	.	+	.	Parent=Os11t0482400-02
Chr11	irgsp1_rep	CDS	16945283	16946287	.	+	0	Parent=Os11t0482400-02
Chr11	irgsp1_rep	three_prime_UTR	16946288	16946600	.	+	.	Parent=Os11t0482400-02
Chr11	irgsp1_rep	mRNA	16948517	16953836	.	-	.	ID=Os11t0482500-01;Name=Os11t0482500-01;Locus_id=Os11g0482500;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK288512 (DDBJ%2C Best hit);ORF_evidence=A2ZE99 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-type%2C conserved site (IPR019786);NIAS_FLcDNA=J090042F13;TENOR=Os11t0482500-01;KEGG=Os11t0482500-01
Chr11	irgsp1_rep	five_prime_UTR	16953625	16953836	.	-	.	Parent=Os11t0482500-01
Chr11	irgsp1_rep	CDS	16953516	16953624	.	-	0	Parent=Os11t0482500-01
Chr11	irgsp1_rep	CDS	16953173	16953390	.	-	2	Parent=Os11t0482500-01
Chr11	irgsp1_rep	CDS	16952178	16952288	.	-	0	Parent=Os11t0482500-01
Chr11	irgsp1_rep	CDS	16949876	16952100	.	-	0	Parent=Os11t0482500-01
Chr11	irgsp1_rep	CDS	16949102	16949174	.	-	1	Parent=Os11t0482500-01
Chr11	irgsp1_rep	CDS	16948818	16948967	.	-	0	Parent=Os11t0482500-01
Chr11	irgsp1_rep	three_prime_UTR	16948517	16948817	.	-	.	Parent=Os11t0482500-01
Chr11	irgsp1_rep	mRNA	16950295	16953804	.	-	.	ID=Os11t0482500-02;Name=Os11t0482500-02;Locus_id=Os11g0482500;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK101075 (DDBJ%2C Best hit);ORF_evidence=A3CBA5 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-type%2C conserved site (IPR019786);NIAS_FLcDNA=J033024B08;Expression=AK101075;TENOR=Os11t0482500-02;KEGG=Os11t0482500-02
Chr11	irgsp1_rep	five_prime_UTR	16953625	16953804	.	-	.	Parent=Os11t0482500-02
Chr11	irgsp1_rep	CDS	16953516	16953624	.	-	0	Parent=Os11t0482500-02
Chr11	irgsp1_rep	CDS	16953173	16953390	.	-	2	Parent=Os11t0482500-02
Chr11	irgsp1_rep	CDS	16952178	16952288	.	-	0	Parent=Os11t0482500-02
Chr11	irgsp1_rep	CDS	16950295	16952100	.	-	0	Parent=Os11t0482500-02
Chr11	irgsp1_rep	mRNA	16985402	16987473	.	-	.	ID=Os11t0482901-01;Name=Os11t0482901-01;Locus_id=Os11g0482901;Note=Hypothetical gene.;Transcript_evidence=AK243326 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100057I07;TENOR=Os11t0482901-01;KEGG=Os11t0482901-01
Chr11	irgsp1_rep	five_prime_UTR	16986787	16987473	.	-	.	Parent=Os11t0482901-01
Chr11	irgsp1_rep	CDS	16985668	16986786	.	-	0	Parent=Os11t0482901-01
Chr11	irgsp1_rep	three_prime_UTR	16985402	16985667	.	-	.	Parent=Os11t0482901-01
Chr11	irgsp1_rep	mRNA	16985426	16987260	.	+	.	ID=Os11t0483000-01;Name=Os11t0483000-01;Locus_id=Os11g0483000;RAP-DB Gene Symbol Synonym(s)=HAN1;RAP-DB Gene Name Synonym(s)=Chilling Tolerance 1;CGSNL Gene Symbol=HAN1;CGSNL Gene Name=CYTOCHROME P450 94B4;Oryzabase Gene Symbol Synonym(s)=OsHAN1%2C OsCYP94B4%2C CYP94B4;Oryzabase Gene Name Synonym(s)=CytoChrome P450 94B4;Note=CytoChrome P450%2C Oxidase%2C JA-mediated chilling tolerance;Transcript_evidence=CT835686 (truncated),Inferred from literature;ORF_evidence=Q2R491;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 superfamily (IPR036396),CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);Manual Curation=March 5%2C 2019;Literature_PMID=30808744;Oryzabase=23036;TENOR=Os11t0483000-00;Subcellular location=endoplasmic reticulum (GO:0005783)
Chr11	irgsp1_rep	five_prime_UTR	16985426	16985577	.	+	.	Parent=Os11t0483000-01
Chr11	irgsp1_rep	CDS	16985578	16987260	.	+	0	Parent=Os11t0483000-01
Chr11	irgsp1_rep	mRNA	17010749	17016159	.	+	.	ID=Os11t0483600-01;Name=Os11t0483600-01;Locus_id=Os11g0483600;Note=DNA-binding SAP domain containing protein.;Transcript_evidence=AK103748 (DDBJ%2C Best hit);ORF_evidence=NP_001148486.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=DNA-binding SAP (IPR003034),Ubiquitin ligase%2C Det1/DDB1-complexing (IPR018276);NIAS_FLcDNA=J033142D19;Expression=AK103748;TENOR=Os11t0483600-01;KEGG=Os11t0483600-01
Chr11	irgsp1_rep	five_prime_UTR	17010749	17010781	.	+	.	Parent=Os11t0483600-01
Chr11	irgsp1_rep	CDS	17010782	17010928	.	+	0	Parent=Os11t0483600-01
Chr11	irgsp1_rep	CDS	17011073	17011118	.	+	0	Parent=Os11t0483600-01
Chr11	irgsp1_rep	CDS	17012016	17012157	.	+	2	Parent=Os11t0483600-01
Chr11	irgsp1_rep	CDS	17014155	17014234	.	+	1	Parent=Os11t0483600-01
Chr11	irgsp1_rep	CDS	17014942	17015043	.	+	2	Parent=Os11t0483600-01
Chr11	irgsp1_rep	CDS	17015787	17015827	.	+	2	Parent=Os11t0483600-01
Chr11	irgsp1_rep	three_prime_UTR	17015828	17016159	.	+	.	Parent=Os11t0483600-01
Chr11	irgsp1_rep	mRNA	17030040	17032586	.	+	.	ID=Os11t0483900-01;Name=Os11t0483900-01;Locus_id=Os11g0483900;Note=Engulfment and cell motility%2C ELM domain containing protein.;Transcript_evidence=AK070344 (DDBJ%2C Best hit);ORF_evidence=B4G0D5 (UniProt);GO=Biological Process: phagocytosis (GO:0006909),Cellular Component: cytoskeleton (GO:0005856);InterPro=Engulfment/cell motility%2C ELMO (IPR006816);NIAS_FLcDNA=J023051L23;Expression=AK070344;TENOR=Os11t0483900-01;KEGG=Os11t0483900-01
Chr11	irgsp1_rep	five_prime_UTR	17030040	17030108	.	+	.	Parent=Os11t0483900-01
Chr11	irgsp1_rep	CDS	17030109	17030148	.	+	0	Parent=Os11t0483900-01
Chr11	irgsp1_rep	CDS	17030408	17030517	.	+	2	Parent=Os11t0483900-01
Chr11	irgsp1_rep	CDS	17030901	17030969	.	+	0	Parent=Os11t0483900-01
Chr11	irgsp1_rep	CDS	17031295	17031410	.	+	0	Parent=Os11t0483900-01
Chr11	irgsp1_rep	CDS	17031504	17031558	.	+	1	Parent=Os11t0483900-01
Chr11	irgsp1_rep	CDS	17031661	17031781	.	+	0	Parent=Os11t0483900-01
Chr11	irgsp1_rep	CDS	17031862	17031909	.	+	2	Parent=Os11t0483900-01
Chr11	irgsp1_rep	CDS	17031996	17032090	.	+	2	Parent=Os11t0483900-01
Chr11	irgsp1_rep	CDS	17032183	17032281	.	+	0	Parent=Os11t0483900-01
Chr11	irgsp1_rep	three_prime_UTR	17032282	17032586	.	+	.	Parent=Os11t0483900-01
Chr11	irgsp1_rep	mRNA	17031951	17034202	.	-	.	ID=Os11t0483950-00;Name=Os11t0483950-00;Locus_id=Os11g0483950;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=EU956865 (DDBJ);ORF_evidence=B6SVV0 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os11t0483950-00;KEGG=Os11t0483950-00
Chr11	irgsp1_rep	five_prime_UTR	17034190	17034202	.	-	.	Parent=Os11t0483950-00
Chr11	irgsp1_rep	CDS	17032753	17034189	.	-	0	Parent=Os11t0483950-00
Chr11	irgsp1_rep	three_prime_UTR	17032608	17032752	.	-	.	Parent=Os11t0483950-00
Chr11	irgsp1_rep	three_prime_UTR	17031951	17032504	.	-	.	Parent=Os11t0483950-00
Chr11	irgsp1_rep	mRNA	17033486	17034124	.	+	.	ID=Os11t0483975-00;Name=Os11t0483975-00;Locus_id=Os11g0483975;Note=Hypothetical protein.;Transcript_evidence=AK357511 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0483975-00
Chr11	irgsp1_rep	five_prime_UTR	17033486	17033487	.	+	.	Parent=Os11t0483975-00
Chr11	irgsp1_rep	CDS	17033488	17033814	.	+	0	Parent=Os11t0483975-00
Chr11	irgsp1_rep	CDS	17033974	17034124	.	+	0	Parent=Os11t0483975-00
Chr11	irgsp1_rep	mRNA	17036933	17044163	.	-	.	ID=Os11t0484000-01;Name=Os11t0484000-01;Locus_id=Os11g0484000;CGSNL Gene Symbol=DEP;CGSNL Gene Name=DEHYDRATASE-ENOLASE-PHOSPHATASE;Oryzabase Gene Symbol Synonym(s)=OsDEP;Oryzabase Gene Name Synonym(s)=Dehydratase-enolase-phosphatase%2C Methylthioribulose-1-phosphate dehydratase-enolase-phosphatase;Note=Class II aldolase/adducin%2C N-terminal family protein.;Transcript_evidence=AK065321 (DDBJ%2C Best hit);ORF_evidence=NP_974931.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Biological Process: L-methionine salvage from methylthioadenosine (GO:0019509),Biological Process: L-methionine salvage (GO:0071267),Cellular Component: cytoplasm (GO:0005737),Molecular Function: phosphoglycolate phosphatase activity (GO:0008967),Molecular Function: ion binding (GO:0043167),Molecular Function: acireductone synthase activity (GO:0043874),Molecular Function: metal ion binding (GO:0046872);InterPro=Class II aldolase/adducin%2C N-terminal (IPR001303),HAD-superfamily hydrolase%2C subfamily IA%2C variant 1 (IPR006439),2%2C3-diketo-5-methylthio-1-phosphopentane phosphatase (IPR010041),Methylthioribulose-1-phosphate dehydratase (IPR017714),HAD-like domain (IPR023214);NIAS_FLcDNA=J013002P15;Oryzabase=11134;Expression=AK065321;TENOR=Os11t0484000-01;KEGG=Os11t0484000-01 (EC:3.1.3.77)
Chr11	irgsp1_rep	five_prime_UTR	17044078	17044163	.	-	.	Parent=Os11t0484000-01
Chr11	irgsp1_rep	CDS	17043855	17044077	.	-	0	Parent=Os11t0484000-01
Chr11	irgsp1_rep	CDS	17041957	17042093	.	-	2	Parent=Os11t0484000-01
Chr11	irgsp1_rep	CDS	17041778	17041873	.	-	0	Parent=Os11t0484000-01
Chr11	irgsp1_rep	CDS	17040607	17040726	.	-	0	Parent=Os11t0484000-01
Chr11	irgsp1_rep	CDS	17040004	17040093	.	-	0	Parent=Os11t0484000-01
Chr11	irgsp1_rep	CDS	17039007	17039168	.	-	0	Parent=Os11t0484000-01
Chr11	irgsp1_rep	CDS	17038650	17038805	.	-	0	Parent=Os11t0484000-01
Chr11	irgsp1_rep	CDS	17038160	17038309	.	-	0	Parent=Os11t0484000-01
Chr11	irgsp1_rep	CDS	17037973	17038074	.	-	0	Parent=Os11t0484000-01
Chr11	irgsp1_rep	CDS	17037627	17037736	.	-	0	Parent=Os11t0484000-01
Chr11	irgsp1_rep	CDS	17037423	17037541	.	-	1	Parent=Os11t0484000-01
Chr11	irgsp1_rep	CDS	17037140	17037231	.	-	2	Parent=Os11t0484000-01
Chr11	irgsp1_rep	three_prime_UTR	17036933	17037139	.	-	.	Parent=Os11t0484000-01
Chr11	irgsp1_rep	mRNA	17046950	17052914	.	+	.	ID=Os11t0484300-01;Name=Os11t0484300-01;Locus_id=Os11g0484300;CGSNL Gene Symbol=MCM2;CGSNL Gene Name=MINI-CHROMOSOME MAINTENANCE PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsMCM2;Note=Similar to Mcm2-prov protein.;Transcript_evidence=AK121422 (DDBJ%2C Best hit);ORF_evidence=Q6QNH2 (UniProt);GO=Biological Process: DNA replication (GO:0006260),Biological Process: DNA-dependent DNA replication initiation (GO:0006270),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP binding (GO:0005524);InterPro=Mini-Chromosome maintenance%2C DNA-dependent ATPase (IPR001208),Mini-Chromosome maintenance complex protein 2 (IPR008045),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),Mini-Chromosome maintenance%2C conserved site (IPR018525);NIAS_FLcDNA=J023133N01;Oryzabase=9202;Expression=AK121422;TENOR=Os11t0484300-01;KEGG=Os11t0484300-01
Chr11	irgsp1_rep	five_prime_UTR	17046950	17047031	.	+	.	Parent=Os11t0484300-01
Chr11	irgsp1_rep	CDS	17047032	17047034	.	+	0	Parent=Os11t0484300-01
Chr11	irgsp1_rep	CDS	17047119	17047366	.	+	0	Parent=Os11t0484300-01
Chr11	irgsp1_rep	CDS	17048080	17048267	.	+	1	Parent=Os11t0484300-01
Chr11	irgsp1_rep	CDS	17048748	17048944	.	+	2	Parent=Os11t0484300-01
Chr11	irgsp1_rep	CDS	17049034	17049223	.	+	0	Parent=Os11t0484300-01
Chr11	irgsp1_rep	CDS	17049320	17049539	.	+	2	Parent=Os11t0484300-01
Chr11	irgsp1_rep	CDS	17049624	17049831	.	+	1	Parent=Os11t0484300-01
Chr11	irgsp1_rep	CDS	17049963	17050097	.	+	0	Parent=Os11t0484300-01
Chr11	irgsp1_rep	CDS	17050180	17050371	.	+	0	Parent=Os11t0484300-01
Chr11	irgsp1_rep	CDS	17050454	17050626	.	+	0	Parent=Os11t0484300-01
Chr11	irgsp1_rep	CDS	17050721	17050909	.	+	1	Parent=Os11t0484300-01
Chr11	irgsp1_rep	CDS	17050994	17051110	.	+	1	Parent=Os11t0484300-01
Chr11	irgsp1_rep	CDS	17051189	17051273	.	+	1	Parent=Os11t0484300-01
Chr11	irgsp1_rep	CDS	17051355	17051507	.	+	0	Parent=Os11t0484300-01
Chr11	irgsp1_rep	CDS	17051590	17051715	.	+	0	Parent=Os11t0484300-01
Chr11	irgsp1_rep	CDS	17051846	17052028	.	+	0	Parent=Os11t0484300-01
Chr11	irgsp1_rep	CDS	17052278	17052439	.	+	0	Parent=Os11t0484300-01
Chr11	irgsp1_rep	CDS	17052553	17052669	.	+	0	Parent=Os11t0484300-01
Chr11	irgsp1_rep	three_prime_UTR	17052670	17052914	.	+	.	Parent=Os11t0484300-01
Chr11	irgsp1_rep	mRNA	17054072	17061369	.	+	.	ID=Os11t0484400-01;Name=Os11t0484400-01;Locus_id=Os11g0484400;Note=Similar to bifunctional dihydrofolate reductase-thymidylate synthase.;Transcript_evidence=AK242642 (DDBJ%2C Best hit);ORF_evidence=Q2R481 (UniProt);GO=Biological Process: dTMP biosynthetic process (GO:0006231),Biological Process: glycine biosynthetic process (GO:0006545),Biological Process: one-carbon metabolic process (GO:0006730),Biological Process: nucleotide biosynthetic process (GO:0009165),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: dihydrofolate reductase activity (GO:0004146),Molecular Function: thymidylate synthase activity (GO:0004799),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Thymidylate synthase (IPR000398),Dihydrofolate reductase domain (IPR001796),Bifunctional dihydrofolate reductase/thymidylate synthase (IPR012262),Dihydrofolate reductase conserved site (IPR017925),Thymidylate synthase%2C active site (IPR020940),Thymidylate synthase/dCMP hydroxymethylase domain (IPR023451),Dihydrofolate reductase-like domain (IPR024072);NIAS_FLcDNA=J090024J21;TENOR=Os11t0484400-01;KEGG=Os11t0484400-01 (EC:2.1.1.45)
Chr11	irgsp1_rep	five_prime_UTR	17054072	17054290	.	+	.	Parent=Os11t0484400-01
Chr11	irgsp1_rep	five_prime_UTR	17055698	17055814	.	+	.	Parent=Os11t0484400-01
Chr11	irgsp1_rep	CDS	17055815	17056224	.	+	0	Parent=Os11t0484400-01
Chr11	irgsp1_rep	CDS	17056328	17056727	.	+	1	Parent=Os11t0484400-01
Chr11	irgsp1_rep	CDS	17056834	17056878	.	+	0	Parent=Os11t0484400-01
Chr11	irgsp1_rep	CDS	17057656	17057721	.	+	0	Parent=Os11t0484400-01
Chr11	irgsp1_rep	CDS	17058344	17058405	.	+	0	Parent=Os11t0484400-01
Chr11	irgsp1_rep	CDS	17058504	17058578	.	+	1	Parent=Os11t0484400-01
Chr11	irgsp1_rep	CDS	17058673	17058838	.	+	1	Parent=Os11t0484400-01
Chr11	irgsp1_rep	CDS	17059066	17059189	.	+	0	Parent=Os11t0484400-01
Chr11	irgsp1_rep	CDS	17060192	17060298	.	+	2	Parent=Os11t0484400-01
Chr11	irgsp1_rep	CDS	17060447	17060557	.	+	0	Parent=Os11t0484400-01
Chr11	irgsp1_rep	three_prime_UTR	17060558	17060561	.	+	.	Parent=Os11t0484400-01
Chr11	irgsp1_rep	three_prime_UTR	17060860	17061369	.	+	.	Parent=Os11t0484400-01
Chr11	irgsp1_rep	mRNA	17064367	17066198	.	-	.	ID=Os11t0484450-00;Name=Os11t0484450-00;Locus_id=Os11g0484450;Note=Hypothetical protein.;Transcript_evidence=tplb0055g22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0484450-00
Chr11	irgsp1_rep	five_prime_UTR	17065466	17066198	.	-	.	Parent=Os11t0484450-00
Chr11	irgsp1_rep	CDS	17065241	17065465	.	-	0	Parent=Os11t0484450-00
Chr11	irgsp1_rep	three_prime_UTR	17064367	17065240	.	-	.	Parent=Os11t0484450-00
Chr11	irgsp1_rep	mRNA	17064395	17066284	.	+	.	ID=Os11t0484500-01;Name=Os11t0484500-01;Locus_id=Os11g0484500;Oryzabase Gene Symbol Synonym(s)=Os6PGDH2;Oryzabase Gene Name Synonym(s)=6-phosphogluconate dehydrogenase 2%2C plastidic 6PGDH;Note=Similar to 6-phosphogluconate dehydrogenase.;Transcript_evidence=AK071592 (DDBJ%2C Best hit);ORF_evidence=B9GAQ3 (UniProt);GO=Biological Process: pentose-phosphate shunt (GO:0006098),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity (GO:0004616),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: NADP binding (GO:0050661),Molecular Function: coenzyme binding (GO:0050662);InterPro=6-phosphogluconate dehydrogenase%2C decarboxylating (IPR006113),6-phosphogluconate dehydrogenase%2C C-terminal (IPR006114),6-phosphogluconate dehydrogenase%2C NADP-binding (IPR006115),6-phosphogluconate dehydrogenase%2C C-terminal-like (IPR008927),Fibritin/6-phosphogluconate dehydrogenase%2C C-terminal extension (IPR012284),Dehydrogenase%2C multihelical (IPR013328),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023104G24;Oryzabase=15130;Expression=AK071592;TENOR=Os11t0484500-01;KEGG=Os11t0484500-01 (EC:1.1.1.44)
Chr11	irgsp1_rep	five_prime_UTR	17064395	17064465	.	+	.	Parent=Os11t0484500-01
Chr11	irgsp1_rep	CDS	17064466	17065992	.	+	0	Parent=Os11t0484500-01
Chr11	irgsp1_rep	three_prime_UTR	17065993	17066284	.	+	.	Parent=Os11t0484500-01
Chr11	irgsp1_rep	mRNA	17065085	17066141	.	+	.	ID=Os11t0484500-02;Name=Os11t0484500-02;Locus_id=Os11g0484500;Oryzabase Gene Symbol Synonym(s)=Os6PGDH2;Oryzabase Gene Name Synonym(s)=6-phosphogluconate dehydrogenase 2%2C plastidic 6PGDH;Note=Similar to 6-phosphogluconate dehydrogenase%2C decarboxylating.;Transcript_evidence=AK059546 (DDBJ%2C Best hit);ORF_evidence=B9GAQ3 (UniProt);GO=Biological Process: pentose-phosphate shunt (GO:0006098),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity (GO:0004616),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: NADP binding (GO:0050661),Molecular Function: coenzyme binding (GO:0050662);InterPro=6-phosphogluconate dehydrogenase%2C C-terminal (IPR006114),6-phosphogluconate dehydrogenase%2C C-terminal-like (IPR008927),Fibritin/6-phosphogluconate dehydrogenase%2C C-terminal extension (IPR012284),Dehydrogenase%2C multihelical (IPR013328);NIAS_FLcDNA=001-029-F05;Oryzabase=15130;Expression=AK059546;TENOR=Os11t0484500-02;KEGG=Os11t0484500-02 (EC:1.1.1.44)
Chr11	irgsp1_rep	five_prime_UTR	17065085	17065086	.	+	.	Parent=Os11t0484500-02
Chr11	irgsp1_rep	CDS	17065087	17065992	.	+	0	Parent=Os11t0484500-02
Chr11	irgsp1_rep	three_prime_UTR	17065993	17066141	.	+	.	Parent=Os11t0484500-02
Chr11	irgsp1_rep	mRNA	17081029	17081391	.	-	.	ID=Os11t0484700-00;Name=Os11t0484700-00;Locus_id=Os11g0484700;Oryzabase Gene Symbol Synonym(s)=OsLTPd12%2C OsLtpVI.4;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein d12%2C lipid transfer protein d12%2C type D non-specific lipid transfer protein 12;Note=Bifunctional inhibitor/plant lipid transfer protein/seed storage domain containing protein.;Transcript_evidence=EU966095 (DDBJ);ORF_evidence=Q2R478 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);Oryzabase=13553;TENOR=Os11t0484700-00;KEGG=Os11t0484700-00
Chr11	irgsp1_rep	CDS	17081029	17081391	.	-	0	Parent=Os11t0484700-00
Chr11	irgsp1_rep	mRNA	17097920	17100193	.	-	.	ID=Os11t0485000-00;Name=Os11t0485000-00;Locus_id=Os11g0485000;Note=Transposase%2C Ptta/En/Spm%2C plant domain containing protein.;Transcript_evidence=AF442490 (DDBJ%2C Secondary hit);ORF_evidence=B9GAQ4 (UniProt);InterPro=Transposase%2C Ptta/En/Spm%2C plant (IPR004252);Expression=AF442490;TENOR=Os11t0485000-00;KEGG=Os11t0485000-00
Chr11	irgsp1_rep	five_prime_UTR	17100123	17100193	.	-	.	Parent=Os11t0485000-00
Chr11	irgsp1_rep	five_prime_UTR	17100052	17100107	.	-	.	Parent=Os11t0485000-00
Chr11	irgsp1_rep	five_prime_UTR	17099486	17099496	.	-	.	Parent=Os11t0485000-00
Chr11	irgsp1_rep	CDS	17099445	17099485	.	-	0	Parent=Os11t0485000-00
Chr11	irgsp1_rep	CDS	17099154	17099346	.	-	1	Parent=Os11t0485000-00
Chr11	irgsp1_rep	CDS	17098707	17099081	.	-	0	Parent=Os11t0485000-00
Chr11	irgsp1_rep	CDS	17098516	17098626	.	-	0	Parent=Os11t0485000-00
Chr11	irgsp1_rep	CDS	17098116	17098208	.	-	0	Parent=Os11t0485000-00
Chr11	irgsp1_rep	three_prime_UTR	17097920	17098115	.	-	.	Parent=Os11t0485000-00
Chr11	irgsp1_rep	mRNA	17108744	17114089	.	+	.	ID=Os11t0485200-01;Name=Os11t0485200-01;Locus_id=Os11g0485200;Oryzabase Gene Name Synonym(s)=Cd transporter;Note=ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter family protein.;Transcript_evidence=AK068468 (DDBJ%2C Best hit);ORF_evidence=Q2R444 (UniProt);GO=Biological Process: ATP catabolic process (GO:0006200),Biological Process: ATP biosynthetic process (GO:0006754),Biological Process: cation transport (GO:0006812),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662),Molecular Function: ATPase activity (GO:0016887),Molecular Function: metal ion binding (GO:0046872);InterPro=ATPase%2C P-type%2C H+ transporting proton pump (IPR000695),ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),ATPase%2C P-type cation-transporter%2C N-terminal (IPR004014),ATPase%2C P-type%2C plasma-membrane proton-efflux (IPR006534),ATPase%2C P-type%2C ATPase-associated domain (IPR008250),HAD-like domain (IPR023214),ATPase%2C P-type%2C  transmembrane domain (IPR023298),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C  P-type%2C cytoplasmic transduction domain A (IPR023300);NIAS_FLcDNA=J013156J19;Oryzabase=23474;Expression=AK068468;TENOR=Os11t0485200-01;KEGG=Os11t0485200-01
Chr11	irgsp1_rep	five_prime_UTR	17108744	17108827	.	+	.	Parent=Os11t0485200-01
Chr11	irgsp1_rep	five_prime_UTR	17108905	17108954	.	+	.	Parent=Os11t0485200-01
Chr11	irgsp1_rep	CDS	17108955	17109101	.	+	0	Parent=Os11t0485200-01
Chr11	irgsp1_rep	CDS	17109629	17110741	.	+	0	Parent=Os11t0485200-01
Chr11	irgsp1_rep	CDS	17110818	17110946	.	+	0	Parent=Os11t0485200-01
Chr11	irgsp1_rep	CDS	17111208	17111430	.	+	0	Parent=Os11t0485200-01
Chr11	irgsp1_rep	CDS	17111528	17111674	.	+	2	Parent=Os11t0485200-01
Chr11	irgsp1_rep	CDS	17111775	17112016	.	+	2	Parent=Os11t0485200-01
Chr11	irgsp1_rep	CDS	17112104	17112133	.	+	0	Parent=Os11t0485200-01
Chr11	irgsp1_rep	CDS	17112229	17112310	.	+	0	Parent=Os11t0485200-01
Chr11	irgsp1_rep	CDS	17112416	17112576	.	+	2	Parent=Os11t0485200-01
Chr11	irgsp1_rep	CDS	17112646	17112810	.	+	0	Parent=Os11t0485200-01
Chr11	irgsp1_rep	CDS	17113188	17113311	.	+	0	Parent=Os11t0485200-01
Chr11	irgsp1_rep	CDS	17113558	17113766	.	+	2	Parent=Os11t0485200-01
Chr11	irgsp1_rep	three_prime_UTR	17113767	17114089	.	+	.	Parent=Os11t0485200-01
Chr11	irgsp1_rep	mRNA	17116033	17116704	.	-	.	ID=Os11t0485500-01;Name=Os11t0485500-01;Locus_id=Os11g0485500;Note=Hypothetical protein.;Transcript_evidence=AK072876 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023144C20;Expression=AK072876;TENOR=Os11t0485500-01;KEGG=Os11t0485500-01
Chr11	irgsp1_rep	five_prime_UTR	17116378	17116704	.	-	.	Parent=Os11t0485500-01
Chr11	irgsp1_rep	CDS	17116075	17116377	.	-	0	Parent=Os11t0485500-01
Chr11	irgsp1_rep	three_prime_UTR	17116033	17116074	.	-	.	Parent=Os11t0485500-01
Chr11	irgsp1_rep	mRNA	17126515	17131998	.	-	.	ID=Os11t0485900-01;Name=Os11t0485900-01;Locus_id=Os11g0485900;Oryzabase Gene Symbol Synonym(s)=rNBS10;Oryzabase Gene Name Synonym(s)=NBS-LRR protein rNBS10;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=AK106341 (DDBJ%2C Best hit);ORF_evidence=Q2R468 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=002-101-G09;Oryzabase=15945;TENOR=Os11t0485900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	17131998	17131998	.	-	.	Parent=Os11t0485900-01
Chr11	irgsp1_rep	CDS	17131916	17131997	.	-	0	Parent=Os11t0485900-01
Chr11	irgsp1_rep	CDS	17130410	17131686	.	-	2	Parent=Os11t0485900-01
Chr11	irgsp1_rep	three_prime_UTR	17130028	17130409	.	-	.	Parent=Os11t0485900-01
Chr11	irgsp1_rep	three_prime_UTR	17126515	17127125	.	-	.	Parent=Os11t0485900-01
Chr11	irgsp1_rep	mRNA	17127130	17129422	.	-	.	ID=Os11t0486000-01;Name=Os11t0486000-01;Locus_id=Os11g0486000;Note=Similar to H0714H04.10 protein.;Transcript_evidence=AK106715 (DDBJ%2C Best hit);ORF_evidence=Q01JU2 (UniProt);NIAS_FLcDNA=002-114-F11;TENOR=Os11t0486000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	17129378	17129422	.	-	.	Parent=Os11t0486000-01
Chr11	irgsp1_rep	CDS	17129091	17129377	.	-	0	Parent=Os11t0486000-01
Chr11	irgsp1_rep	CDS	17128132	17128999	.	-	1	Parent=Os11t0486000-01
Chr11	irgsp1_rep	three_prime_UTR	17127130	17128131	.	-	.	Parent=Os11t0486000-01
Chr11	irgsp1_rep	mRNA	17180535	17182468	.	-	.	ID=Os11t0487100-01;Name=Os11t0487100-01;Locus_id=Os11g0487100;Note=Conserved hypothetical protein.;Transcript_evidence=AK243450 (DDBJ%2C Best hit);ORF_evidence=NP_001176544.1 (RefSeq);NIAS_FLcDNA=J100070A07;TENOR=Os11t0487100-01;KEGG=Os11t0487100-01
Chr11	irgsp1_rep	five_prime_UTR	17182271	17182468	.	-	.	Parent=Os11t0487100-01
Chr11	irgsp1_rep	CDS	17182223	17182270	.	-	0	Parent=Os11t0487100-01
Chr11	irgsp1_rep	CDS	17182018	17182113	.	-	0	Parent=Os11t0487100-01
Chr11	irgsp1_rep	CDS	17180670	17181632	.	-	0	Parent=Os11t0487100-01
Chr11	irgsp1_rep	three_prime_UTR	17180535	17180669	.	-	.	Parent=Os11t0487100-01
Chr11	irgsp1_rep	mRNA	17200652	17201107	.	-	.	ID=Os11t0487700-00;Name=Os11t0487700-00;Locus_id=Os11g0487700;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001176545.1 (RefSeq);TENOR=Os11t0487700-00
Chr11	irgsp1_rep	CDS	17200652	17201107	.	-	0	Parent=Os11t0487700-00
Chr11	irgsp1_rep	mRNA	17203499	17204626	.	+	.	ID=Os11t0488400-00;Name=Os11t0488400-00;Locus_id=Os11g0488400;Note=Conserved hypothetical protein.;Transcript_evidence=BT034552 (DDBJ);ORF_evidence=B8BKJ3 (UniProt);TENOR=Os11t0488400-00;KEGG=Os11t0488400-00
Chr11	irgsp1_rep	five_prime_UTR	17203499	17203588	.	+	.	Parent=Os11t0488400-00
Chr11	irgsp1_rep	CDS	17203589	17204626	.	+	0	Parent=Os11t0488400-00
Chr11	irgsp1_rep	mRNA	17206889	17210071	.	+	.	ID=Os11t0488500-01;Name=Os11t0488500-01;Locus_id=Os11g0488500;Note=2OG-Fe(II) oxygenase domain containing protein.;Transcript_evidence=AK103909 (DDBJ%2C Best hit);ORF_evidence=XP_002892656.1 (RefSeq);NIAS_FLcDNA=J033150O13;Expression=AK103909;TENOR=Os11t0488500-01;KEGG=Os11t0488500-01
Chr11	irgsp1_rep	five_prime_UTR	17206889	17206889	.	+	.	Parent=Os11t0488500-01
Chr11	irgsp1_rep	CDS	17206890	17207002	.	+	0	Parent=Os11t0488500-01
Chr11	irgsp1_rep	CDS	17207101	17207270	.	+	1	Parent=Os11t0488500-01
Chr11	irgsp1_rep	CDS	17207899	17208248	.	+	2	Parent=Os11t0488500-01
Chr11	irgsp1_rep	CDS	17209095	17209233	.	+	0	Parent=Os11t0488500-01
Chr11	irgsp1_rep	CDS	17209331	17209397	.	+	2	Parent=Os11t0488500-01
Chr11	irgsp1_rep	CDS	17209479	17209617	.	+	1	Parent=Os11t0488500-01
Chr11	irgsp1_rep	three_prime_UTR	17209618	17210071	.	+	.	Parent=Os11t0488500-01
Chr11	irgsp1_rep	mRNA	17209095	17210071	.	+	.	ID=Os11t0488500-02;Name=Os11t0488500-02;Locus_id=Os11g0488500;Note=Similar to oxidoreductase%2C 2OG-Fe(II) oxygenase family protein.;Transcript_evidence=AK062459 (DDBJ%2C Best hit);ORF_evidence=NP_172643.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=001-103-D02;Expression=AK062459;TENOR=Os11t0488500-02;KEGG=Os11t0488500-02
Chr11	irgsp1_rep	CDS	17209095	17209233	.	+	0	Parent=Os11t0488500-02
Chr11	irgsp1_rep	CDS	17209331	17209397	.	+	2	Parent=Os11t0488500-02
Chr11	irgsp1_rep	CDS	17209479	17209600	.	+	1	Parent=Os11t0488500-02
Chr11	irgsp1_rep	CDS	17209704	17209843	.	+	2	Parent=Os11t0488500-02
Chr11	irgsp1_rep	three_prime_UTR	17209844	17210071	.	+	.	Parent=Os11t0488500-02
Chr11	irgsp1_rep	mRNA	17210727	17212826	.	-	.	ID=Os11t0488600-01;Name=Os11t0488600-01;Locus_id=Os11g0488600;Note=Conserved hypothetical protein.;Transcript_evidence=AK111309 (DDBJ%2C Best hit);ORF_evidence=Q2R450 (UniProt);NIAS_FLcDNA=002-181-C01;Expression=AK111309;TENOR=Os11t0488600-01;KEGG=Os11t0488600-01
Chr11	irgsp1_rep	five_prime_UTR	17212777	17212826	.	-	.	Parent=Os11t0488600-01
Chr11	irgsp1_rep	CDS	17212677	17212776	.	-	0	Parent=Os11t0488600-01
Chr11	irgsp1_rep	CDS	17212525	17212565	.	-	2	Parent=Os11t0488600-01
Chr11	irgsp1_rep	CDS	17212345	17212389	.	-	0	Parent=Os11t0488600-01
Chr11	irgsp1_rep	CDS	17212175	17212232	.	-	0	Parent=Os11t0488600-01
Chr11	irgsp1_rep	CDS	17211709	17211802	.	-	2	Parent=Os11t0488600-01
Chr11	irgsp1_rep	CDS	17211245	17211329	.	-	1	Parent=Os11t0488600-01
Chr11	irgsp1_rep	CDS	17211084	17211149	.	-	0	Parent=Os11t0488600-01
Chr11	irgsp1_rep	CDS	17210860	17210946	.	-	0	Parent=Os11t0488600-01
Chr11	irgsp1_rep	three_prime_UTR	17210727	17210859	.	-	.	Parent=Os11t0488600-01
Chr11	irgsp1_rep	mRNA	17229938	17231333	.	+	.	ID=Os11t0488900-00;Name=Os11t0488900-00;Locus_id=Os11g0488900;Oryzabase Gene Symbol Synonym(s)=OsFbox600%2C Os_F0472;Oryzabase Gene Name Synonym(s)=F-box protein 600;Note=Similar to MYND finger family protein%2C expressed.;Transcript_evidence=AK354612 (DDBJ);ORF_evidence=Q2R448 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C MYND-type (IPR002893),Tetratricopeptide-like helical (IPR011990),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17363;TENOR=Os11t0488900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	17229938	17230034	.	+	.	Parent=Os11t0488900-00
Chr11	irgsp1_rep	CDS	17230035	17230285	.	+	0	Parent=Os11t0488900-00
Chr11	irgsp1_rep	CDS	17230394	17230556	.	+	1	Parent=Os11t0488900-00
Chr11	irgsp1_rep	CDS	17230643	17231305	.	+	0	Parent=Os11t0488900-00
Chr11	irgsp1_rep	three_prime_UTR	17231306	17231333	.	+	.	Parent=Os11t0488900-00
Chr11	irgsp1_rep	mRNA	17234743	17237925	.	-	.	ID=Os11t0489250-00;Name=Os11t0489250-00;Locus_id=Os11g0489250;Note=Similar to CytoChrome P450 family protein%2C expressed.;Transcript_evidence=AK373926 (DDBJ);ORF_evidence=Q2R447 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os11t0489250-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	17236912	17237925	.	-	0	Parent=Os11t0489250-00
Chr11	irgsp1_rep	CDS	17234743	17235345	.	-	0	Parent=Os11t0489250-00
Chr11	irgsp1_rep	mRNA	17284028	17285405	.	+	.	ID=Os11t0490100-01;Name=Os11t0490100-01;Locus_id=Os11g0490100;Note=Protein of unknown function DUF579%2C plant family protein.;Transcript_evidence=AK108872 (DDBJ%2C Best hit);ORF_evidence=NP_001151168.1 (RefSeq);InterPro=Conserved hypothetical protein CHP01627 (IPR006514),Protein of unknown function DUF579 (IPR021148);NIAS_FLcDNA=002-152-C10;Expression=AK108872;TENOR=Os11t0490100-01;KEGG=Os11t0490100-01
Chr11	irgsp1_rep	five_prime_UTR	17284028	17284122	.	+	.	Parent=Os11t0490100-01
Chr11	irgsp1_rep	CDS	17284123	17285031	.	+	0	Parent=Os11t0490100-01
Chr11	irgsp1_rep	three_prime_UTR	17285032	17285405	.	+	.	Parent=Os11t0490100-01
Chr11	irgsp1_rep	mRNA	17290977	17294288	.	+	.	ID=Os11t0490200-00;Name=Os11t0490200-00;Locus_id=Os11g0490200;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK374629 (DDBJ);ORF_evidence=NP_001067924.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os11t0490200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	17290977	17293785	.	+	0	Parent=Os11t0490200-00
Chr11	irgsp1_rep	CDS	17293864	17294288	.	+	2	Parent=Os11t0490200-00
Chr11	irgsp1_rep	mRNA	17291121	17294239	.	-	.	ID=Os11t0490251-00;Name=Os11t0490251-00;Locus_id=Os11g0490251;Note=Hypothetical protein.;Transcript_evidence=tplb0061a11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0490251-00
Chr11	irgsp1_rep	five_prime_UTR	17293860	17294239	.	-	.	Parent=Os11t0490251-00
Chr11	irgsp1_rep	five_prime_UTR	17293562	17293779	.	-	.	Parent=Os11t0490251-00
Chr11	irgsp1_rep	CDS	17293325	17293561	.	-	0	Parent=Os11t0490251-00
Chr11	irgsp1_rep	three_prime_UTR	17291121	17293324	.	-	.	Parent=Os11t0490251-00
Chr11	irgsp1_rep	mRNA	17298741	17299603	.	+	.	ID=Os11t0490300-00;Name=Os11t0490300-00;Locus_id=Os11g0490300;Note=Hypothetical conserved gene.;Transcript_evidence=EU964357 (DDBJ);ORF_evidence=O48694 (UniProt);TENOR=Os11t0490300-00;KEGG=Os11t0490300-00
Chr11	irgsp1_rep	five_prime_UTR	17298741	17298809	.	+	.	Parent=Os11t0490300-00
Chr11	irgsp1_rep	CDS	17298810	17299535	.	+	0	Parent=Os11t0490300-00
Chr11	irgsp1_rep	three_prime_UTR	17299536	17299603	.	+	.	Parent=Os11t0490300-00
Chr11	irgsp1_rep	mRNA	17318918	17324441	.	+	.	ID=Os11t0490600-01;Name=Os11t0490600-01;Locus_id=Os11g0490600;RAP-DB Gene Symbol Synonym(s)=LA1%2C LAZY1%2C OsLAZY1%2C OsLazy1;RAP-DB Gene Name Synonym(s)=LAZY 1%2C LAZY1;CGSNL Gene Symbol=LAZY1;CGSNL Gene Name=LAZY 1;Oryzabase Gene Symbol Synonym(s)=lazy1%2C LA1%2C OsLazy1;Note=Regulation of shoot gravitropism and tiller angle%2C Regulation of polar auxin transport;Transcript_evidence=AK067664;ORF_evidence=Q2R435;NIAS_FLcDNA=J013117H24;Manual Curation=May 30%2C 2017;Literature_PMID=17468779;Oryzabase=7270;Expression=AK067664;TENOR=Os11t0490600-01;KEGG=Os11t0490600-01;Subcellular location=nucleus (GO:0005634), plasma membrane (GO:0005886)
Chr11	irgsp1_rep	five_prime_UTR	17318918	17318945	.	+	.	Parent=Os11t0490600-01
Chr11	irgsp1_rep	CDS	17318946	17318951	.	+	0	Parent=Os11t0490600-01
Chr11	irgsp1_rep	CDS	17319318	17319387	.	+	0	Parent=Os11t0490600-01
Chr11	irgsp1_rep	CDS	17321354	17322222	.	+	2	Parent=Os11t0490600-01
Chr11	irgsp1_rep	CDS	17323600	17323885	.	+	0	Parent=Os11t0490600-01
Chr11	irgsp1_rep	CDS	17324102	17324121	.	+	2	Parent=Os11t0490600-01
Chr11	irgsp1_rep	three_prime_UTR	17324122	17324441	.	+	.	Parent=Os11t0490600-01
Chr11	irgsp1_rep	mRNA	17319360	17324407	.	+	.	ID=Os11t0490600-02;Name=Os11t0490600-02;Locus_id=Os11g0490600;CGSNL Gene Symbol=LAZY1;CGSNL Gene Name=LAZY 1;Oryzabase Gene Symbol Synonym(s)=lazy1%2C LA1%2C OsLazy1;Note=Hypothetical conserved gene.;Transcript_evidence=AK104957 (DDBJ%2C Best hit);ORF_evidence=A2ZED5 (UniProt);NIAS_FLcDNA=001-114-B05;Oryzabase=7270;Expression=AK104957;TENOR=Os11t0490600-02;KEGG=Os11t0490600-02
Chr11	irgsp1_rep	CDS	17319360	17319387	.	+	0	Parent=Os11t0490600-02
Chr11	irgsp1_rep	CDS	17321354	17322222	.	+	2	Parent=Os11t0490600-02
Chr11	irgsp1_rep	CDS	17323600	17323885	.	+	0	Parent=Os11t0490600-02
Chr11	irgsp1_rep	CDS	17324102	17324121	.	+	2	Parent=Os11t0490600-02
Chr11	irgsp1_rep	three_prime_UTR	17324122	17324407	.	+	.	Parent=Os11t0490600-02
Chr11	irgsp1_rep	mRNA	17329608	17332873	.	+	.	ID=Os11t0490800-01;Name=Os11t0490800-01;Locus_id=Os11g0490800;CGSNL Gene Symbol=CNL1;CGSNL Gene Name=CHLOROTIC AND NECROTIC LEAF 1;Oryzabase Gene Symbol Synonym(s)=ABCI7%2C OsABCI7%2C OsABCI7_1%2C OsABCI7_2%2C OsABCI8%2C ABCI8%2C OsABCI8.1%2C OsABCI8.2%2C OsCNL1;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCI subgroup member 7%2C chlorotic and necrotic leaf1;Note=Similar to ABC transporter family protein%2C expressed.;Transcript_evidence=AK106821 (DDBJ%2C Best hit);ORF_evidence=Q2R434 (UniProt);NIAS_FLcDNA=002-116-E03;Oryzabase=12031;TENOR=Os11t0490800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	17329608	17329794	.	+	.	Parent=Os11t0490800-01
Chr11	irgsp1_rep	CDS	17329795	17329944	.	+	0	Parent=Os11t0490800-01
Chr11	irgsp1_rep	CDS	17330384	17330463	.	+	0	Parent=Os11t0490800-01
Chr11	irgsp1_rep	CDS	17330540	17330591	.	+	1	Parent=Os11t0490800-01
Chr11	irgsp1_rep	CDS	17330676	17330873	.	+	0	Parent=Os11t0490800-01
Chr11	irgsp1_rep	three_prime_UTR	17330874	17331040	.	+	.	Parent=Os11t0490800-01
Chr11	irgsp1_rep	three_prime_UTR	17331194	17331280	.	+	.	Parent=Os11t0490800-01
Chr11	irgsp1_rep	three_prime_UTR	17331384	17331432	.	+	.	Parent=Os11t0490800-01
Chr11	irgsp1_rep	three_prime_UTR	17331880	17331964	.	+	.	Parent=Os11t0490800-01
Chr11	irgsp1_rep	three_prime_UTR	17332170	17332309	.	+	.	Parent=Os11t0490800-01
Chr11	irgsp1_rep	three_prime_UTR	17332448	17332873	.	+	.	Parent=Os11t0490800-01
Chr11	irgsp1_rep	mRNA	17329608	17332992	.	+	.	ID=Os11t0490800-02;Name=Os11t0490800-02;Locus_id=Os11g0490800;RAP-DB Gene Symbol Synonym(s)=ABCI7%2C OsABCI7_1%2C OsABCI8%2C OsABCI8.1;RAP-DB Gene Name Synonym(s)=ABC TRANSPORTER I FAMILY MEMBER 7;CGSNL Gene Symbol=ABCI7;CGSNL Gene Name=ABC TRANSPORTER I FAMILY MEMBER 7;Oryzabase Gene Symbol Synonym(s)=OsABCI7%2C OsABCI7_1%2C OsABCI7_2%2C OsABCI8%2C ABCI8%2C OsABCI8.1%2C OsABCI8.2;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCI subgroup member 7;Note=A member of the ABCI (ABC transporter group I) family%2C Chloroplast development and chlorophyll biosynthesis under suboptimal light conditions%2C Transition metals transportation and/or homeostasis;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),ABC transporter-like (IPR003439),AAA+ ATPase domain (IPR003593);Manual Curation=June 22%2C 2017;Literature_PMID=28285416,18299247;Oryzabase=12031;Subcellular location=chloroplast (GO:0009507)
Chr11	irgsp1_rep	five_prime_UTR	17329608	17329794	.	+	.	Parent=Os11t0490800-02
Chr11	irgsp1_rep	CDS	17329795	17329944	.	+	0	Parent=Os11t0490800-02
Chr11	irgsp1_rep	CDS	17330384	17330463	.	+	0	Parent=Os11t0490800-02
Chr11	irgsp1_rep	CDS	17330540	17330591	.	+	1	Parent=Os11t0490800-02
Chr11	irgsp1_rep	CDS	17330676	17330809	.	+	0	Parent=Os11t0490800-02
Chr11	irgsp1_rep	CDS	17330926	17331040	.	+	1	Parent=Os11t0490800-02
Chr11	irgsp1_rep	CDS	17331194	17331280	.	+	0	Parent=Os11t0490800-02
Chr11	irgsp1_rep	CDS	17331384	17331432	.	+	0	Parent=Os11t0490800-02
Chr11	irgsp1_rep	CDS	17331880	17331964	.	+	2	Parent=Os11t0490800-02
Chr11	irgsp1_rep	CDS	17332170	17332244	.	+	1	Parent=Os11t0490800-02
Chr11	irgsp1_rep	CDS	17332448	17332490	.	+	1	Parent=Os11t0490800-02
Chr11	irgsp1_rep	three_prime_UTR	17332491	17332992	.	+	.	Parent=Os11t0490800-02
Chr11	irgsp1_rep	mRNA	17329608	17332992	.	+	.	ID=Os11t0490800-03;Name=Os11t0490800-03;Locus_id=Os11g0490800;RAP-DB Gene Symbol Synonym(s)=ABCI7%2C OsABCI7_2%2C OsABCI8%2C OsABCI8.2;RAP-DB Gene Name Synonym(s)=ABC TRANSPORTER I FAMILY MEMBER 7;CGSNL Gene Symbol=ABCI7;CGSNL Gene Name=ABC TRANSPORTER I FAMILY MEMBER 7;Oryzabase Gene Symbol Synonym(s)=OsABCI7%2C OsABCI7_1%2C OsABCI7_2%2C OsABCI8%2C ABCI8%2C OsABCI8.1%2C OsABCI8.2;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCI subgroup member 7;Note=A member of the ABCI (ABC transporter group I) family%2C Chloroplast development and chlorophyll biosynthesis under suboptimal light conditions%2C Transition metals transportation and/or homeostasis;Transcript_evidence=Inferred from literature;ORF_evidence=Q2R434;GO=Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),ABC transporter-like (IPR003439),AAA+ ATPase domain (IPR003593);Manual Curation=June 22%2C 2017;Literature_PMID=28285416,18299247;Oryzabase=12031;Subcellular location=chloroplast (GO:0009507)
Chr11	irgsp1_rep	five_prime_UTR	17329608	17329794	.	+	.	Parent=Os11t0490800-03
Chr11	irgsp1_rep	CDS	17329795	17329944	.	+	0	Parent=Os11t0490800-03
Chr11	irgsp1_rep	CDS	17330384	17330463	.	+	0	Parent=Os11t0490800-03
Chr11	irgsp1_rep	CDS	17330540	17330591	.	+	1	Parent=Os11t0490800-03
Chr11	irgsp1_rep	CDS	17330676	17330809	.	+	0	Parent=Os11t0490800-03
Chr11	irgsp1_rep	CDS	17330926	17331040	.	+	1	Parent=Os11t0490800-03
Chr11	irgsp1_rep	CDS	17331194	17331280	.	+	0	Parent=Os11t0490800-03
Chr11	irgsp1_rep	CDS	17331384	17331432	.	+	0	Parent=Os11t0490800-03
Chr11	irgsp1_rep	CDS	17331880	17331964	.	+	2	Parent=Os11t0490800-03
Chr11	irgsp1_rep	CDS	17332170	17332248	.	+	1	Parent=Os11t0490800-03
Chr11	irgsp1_rep	three_prime_UTR	17332249	17332992	.	+	.	Parent=Os11t0490800-03
Chr11	irgsp1_rep	mRNA	17346594	17352434	.	-	.	ID=Os11t0490850-01;Name=Os11t0490850-01;Locus_id=Os11g0490850;Note=Non-protein coding transcript.;Transcript_evidence=AK288628 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090054O04;TENOR=Os11t0490850-01
Chr11	irgsp1_rep	exon	17346594	17352434	.	-	.	Parent=Os11t0490850-01
Chr11	irgsp1_rep	mRNA	17352249	17355819	.	+	.	ID=Os11t0490900-01;Name=Os11t0490900-01;Locus_id=Os11g0490900;CGSNL Gene Symbol=WRKY72;CGSNL Gene Name=WRKY GENE 72;Oryzabase Gene Symbol Synonym(s)=OsWRKY72%2C WRKY-72;Oryzabase Gene Name Synonym(s)=Rice WRKY gene72;Note=Similar to WRKY transcription factor 72.;Transcript_evidence=AK108860 (DDBJ%2C Best hit);ORF_evidence=B2KJ55 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);NIAS_FLcDNA=002-152-B08;Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6587;Expression=AK108860;TENOR=Os11t0490900-01;KEGG=Os11t0490900-01
Chr11	irgsp1_rep	five_prime_UTR	17352249	17352334	.	+	.	Parent=Os11t0490900-01
Chr11	irgsp1_rep	CDS	17352335	17352804	.	+	0	Parent=Os11t0490900-01
Chr11	irgsp1_rep	CDS	17355202	17355460	.	+	1	Parent=Os11t0490900-01
Chr11	irgsp1_rep	three_prime_UTR	17355461	17355819	.	+	.	Parent=Os11t0490900-01
Chr11	irgsp1_rep	mRNA	17379764	17382897	.	+	.	ID=Os11t0491400-01;Name=Os11t0491400-01;Locus_id=Os11g0491400;Note=Conserved hypothetical protein.;Transcript_evidence=AK068341 (DDBJ%2C Best hit);ORF_evidence=A2ZEE1 (UniProt);NIAS_FLcDNA=J013149K10;Expression=AK068341;TENOR=Os11t0491400-01;KEGG=Os11t0491400-01
Chr11	irgsp1_rep	five_prime_UTR	17379764	17380077	.	+	.	Parent=Os11t0491400-01
Chr11	irgsp1_rep	five_prime_UTR	17380596	17380598	.	+	.	Parent=Os11t0491400-01
Chr11	irgsp1_rep	CDS	17380599	17380782	.	+	0	Parent=Os11t0491400-01
Chr11	irgsp1_rep	CDS	17381158	17381527	.	+	2	Parent=Os11t0491400-01
Chr11	irgsp1_rep	CDS	17381638	17382367	.	+	1	Parent=Os11t0491400-01
Chr11	irgsp1_rep	three_prime_UTR	17382368	17382897	.	+	.	Parent=Os11t0491400-01
Chr11	irgsp1_rep	mRNA	17383893	17384607	.	+	.	ID=Os11t0491500-00;Name=Os11t0491500-00;Locus_id=Os11g0491500;CGSNL Gene Symbol=ENODL22;CGSNL Gene Name=EARLY NODULIN LIKE PROTEIN 22;Oryzabase Gene Symbol Synonym(s)=OsENODL22;Oryzabase Gene Name Synonym(s)=early nodulin-like protein 22;Note=Similar to Plastocyanin-like domain containing protein.;Transcript_evidence=FP092976 (DDBJ);ORF_evidence=Q2R428 (UniProt);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);Oryzabase=9747;TENOR=Os11t0491500-00;KEGG=Os11t0491500-00
Chr11	irgsp1_rep	CDS	17383893	17384160	.	+	0	Parent=Os11t0491500-00
Chr11	irgsp1_rep	CDS	17384237	17384607	.	+	2	Parent=Os11t0491500-00
Chr11	irgsp1_rep	mRNA	17384234	17384565	.	-	.	ID=Os11t0491550-00;Name=Os11t0491550-00;Locus_id=Os11g0491550;Note=Hypothetical gene.;Transcript_evidence=EU947690 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0491550-00;KEGG=Os11t0491550-00
Chr11	irgsp1_rep	five_prime_UTR	17384564	17384565	.	-	.	Parent=Os11t0491550-00
Chr11	irgsp1_rep	CDS	17384240	17384563	.	-	0	Parent=Os11t0491550-00
Chr11	irgsp1_rep	three_prime_UTR	17384234	17384239	.	-	.	Parent=Os11t0491550-00
Chr11	irgsp1_rep	mRNA	17384670	17387292	.	-	.	ID=Os11t0491600-00;Name=Os11t0491600-00;Locus_id=Os11g0491600;Note=Hypothetical conserved gene.;Transcript_evidence=CT837969 (DDBJ%2C Best hit);ORF_evidence=Q2R427 (UniProt);TENOR=Os11t0491600-00;KEGG=Os11t0491600-00
Chr11	irgsp1_rep	five_prime_UTR	17387102	17387292	.	-	.	Parent=Os11t0491600-00
Chr11	irgsp1_rep	CDS	17386019	17387101	.	-	0	Parent=Os11t0491600-00
Chr11	irgsp1_rep	three_prime_UTR	17384670	17386018	.	-	.	Parent=Os11t0491600-00
Chr11	irgsp1_rep	mRNA	17414419	17414921	.	-	.	ID=Os11t0491850-00;Name=Os11t0491850-00;Locus_id=Os11g0491850;Note=Non-protein coding transcript.;Transcript_evidence=EU685836 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0491850-00
Chr11	irgsp1_rep	exon	17414419	17414921	.	-	.	Parent=Os11t0491850-00
Chr11	irgsp1_rep	mRNA	17416016	17417528	.	-	.	ID=Os11t0492100-01;Name=Os11t0492100-01;Locus_id=Os11g0492100;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=AK241548 (DDBJ%2C Best hit);ORF_evidence=Q2R422 (UniProt);NIAS_FLcDNA=J065176K24;TENOR=Os11t0492100-01;KEGG=Os11t0492100-01
Chr11	irgsp1_rep	five_prime_UTR	17417482	17417528	.	-	.	Parent=Os11t0492100-01
Chr11	irgsp1_rep	CDS	17417038	17417481	.	-	0	Parent=Os11t0492100-01
Chr11	irgsp1_rep	three_prime_UTR	17416016	17417037	.	-	.	Parent=Os11t0492100-01
Chr11	irgsp1_rep	mRNA	17426180	17428252	.	-	.	ID=Os11t0492200-00;Name=Os11t0492200-00;Locus_id=Os11g0492200;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=EU685835 (DDBJ);ORF_evidence=Q2R421 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os11t0492200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	17426180	17428252	.	-	0	Parent=Os11t0492200-00
Chr11	irgsp1_rep	mRNA	17434258	17436861	.	-	.	ID=Os11t0492300-00;Name=Os11t0492300-00;Locus_id=Os11g0492300;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=EU685835 (DDBJ);ORF_evidence=Q2R420 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os11t0492300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	17434258	17436861	.	-	0	Parent=Os11t0492300-00
Chr11	irgsp1_rep	mRNA	17454145	17455221	.	-	.	ID=Os11t0492500-00;Name=Os11t0492500-00;Locus_id=Os11g0492500;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=EU685835 (DDBJ);ORF_evidence=Q2R418 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os11t0492500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	17454145	17455221	.	-	0	Parent=Os11t0492500-00
Chr11	irgsp1_rep	mRNA	17470606	17473268	.	+	.	ID=Os11t0492800-00;Name=Os11t0492800-00;Locus_id=Os11g0492800;Note=Similar to Esterase PIR7A.;Transcript_evidence=EU972429 (DDBJ);ORF_evidence=B6U5B4 (UniProt);TENOR=Os11t0492800-00;KEGG=Os11t0492800-00 (EC:3.1.1.78)
Chr11	irgsp1_rep	CDS	17470606	17471022	.	+	0	Parent=Os11t0492800-00
Chr11	irgsp1_rep	CDS	17471105	17471202	.	+	0	Parent=Os11t0492800-00
Chr11	irgsp1_rep	CDS	17472596	17472635	.	+	1	Parent=Os11t0492800-00
Chr11	irgsp1_rep	CDS	17472950	17473234	.	+	0	Parent=Os11t0492800-00
Chr11	irgsp1_rep	three_prime_UTR	17473235	17473268	.	+	.	Parent=Os11t0492800-00
Chr11	irgsp1_rep	mRNA	17481271	17481813	.	-	.	ID=Os11t0492900-00;Name=Os11t0492900-00;Locus_id=Os11g0492900;Note=Similar to NBS-LRR type resistance protein (Fragment).;Transcript_evidence=EU685836 (DDBJ);ORF_evidence=O48992 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os11t0492900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	17481286	17481813	.	-	0	Parent=Os11t0492900-00
Chr11	irgsp1_rep	three_prime_UTR	17481271	17481285	.	-	.	Parent=Os11t0492900-00
Chr11	irgsp1_rep	mRNA	17487115	17487613	.	+	.	ID=Os11t0493000-00;Name=Os11t0493000-00;Locus_id=Os11g0493000;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=EU685835 (DDBJ);ORF_evidence=Q2R413 (UniProt);TENOR=Os11t0493000-00
Chr11	irgsp1_rep	five_prime_UTR	17487115	17487357	.	+	.	Parent=Os11t0493000-00
Chr11	irgsp1_rep	CDS	17487358	17487570	.	+	0	Parent=Os11t0493000-00
Chr11	irgsp1_rep	three_prime_UTR	17487571	17487613	.	+	.	Parent=Os11t0493000-00
Chr11	irgsp1_rep	mRNA	17509307	17509867	.	+	.	ID=Os11t0493100-00;Name=Os11t0493100-00;Locus_id=Os11g0493100;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=EU685835 (DDBJ);ORF_evidence=Q2R408 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os11t0493100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	17509307	17509867	.	+	0	Parent=Os11t0493100-00
Chr11	irgsp1_rep	mRNA	17388238	17390587	.	-	.	ID=Os11t0493700-00;Name=Os11t0493700-00;Locus_id=Os11g0493700;Note=Similar to NBS-LRR type resistance protein (Fragment).;Transcript_evidence=EU685835 (DDBJ);ORF_evidence=O48991 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os11t0493700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	17390578	17390587	.	-	.	Parent=Os11t0493700-00
Chr11	irgsp1_rep	CDS	17388238	17390577	.	-	0	Parent=Os11t0493700-00
Chr11	irgsp1_rep	mRNA	17562956	17563942	.	-	.	ID=Os11t0494100-00;Name=Os11t0494100-00;Locus_id=Os11g0494100;Note=Similar to NBS-LRR type resistance protein (Fragment).;Transcript_evidence=EU685836 (DDBJ);ORF_evidence=D3JNI7 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os11t0494100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	17562956	17563942	.	-	0	Parent=Os11t0494100-00
Chr11	irgsp1_rep	mRNA	17596500	17596895	.	-	.	ID=Os11t0495400-00;Name=Os11t0495400-00;Locus_id=Os11g0495400;Note=Similar to PHF5-like protein.;Transcript_evidence=BT054678 (DDBJ);ORF_evidence=Q2R3Z0 (UniProt);InterPro=PHF5-like (IPR005345);TENOR=Os11t0495400-00
Chr11	irgsp1_rep	CDS	17596500	17596895	.	-	0	Parent=Os11t0495400-00
Chr11	irgsp1_rep	mRNA	17599930	17601552	.	-	.	ID=Os11t0495950-00;Name=Os11t0495950-00;Locus_id=Os11g0495950;Note=FAD-linked oxidase%2C FAD-binding%2C subdomain 2 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001176553.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: catalytic activity (GO:0003824),Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=FAD linked oxidase%2C N-terminal (IPR006094),Berberine/berberine-like (IPR012951),FAD-binding%2C type 2 (IPR016166),FAD-binding%2C type 2%2C subdomain 1 (IPR016167),FAD-linked oxidase%2C FAD-binding%2C subdomain 2 (IPR016168);TENOR=Os11t0495950-00;KEGG=Os11t0495950-00
Chr11	irgsp1_rep	CDS	17599930	17601552	.	-	0	Parent=Os11t0495950-00
Chr11	irgsp1_rep	mRNA	17600053	17601345	.	+	.	ID=Os11t0496013-00;Name=Os11t0496013-00;Locus_id=Os11g0496013;Note=Hypothetical gene.;Transcript_evidence=EU957461 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0496013-00;KEGG=Os11t0496013-00
Chr11	irgsp1_rep	five_prime_UTR	17600053	17600467	.	+	.	Parent=Os11t0496013-00
Chr11	irgsp1_rep	CDS	17600468	17600541	.	+	0	Parent=Os11t0496013-00
Chr11	irgsp1_rep	CDS	17600701	17600995	.	+	1	Parent=Os11t0496013-00
Chr11	irgsp1_rep	three_prime_UTR	17600996	17601345	.	+	.	Parent=Os11t0496013-00
Chr11	irgsp1_rep	mRNA	17616598	17618036	.	-	.	ID=Os11t0496400-01;Name=Os11t0496400-01;Locus_id=Os11g0496400;Oryzabase Gene Symbol Synonym(s)=OsSTA259;Note=Octicosapeptide/Phox/Bem1p domain containing protein.;Transcript_evidence=AK107085 (DDBJ%2C Best hit);ORF_evidence=XP_002865817.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Phox/Bem1p (IPR000270);NIAS_FLcDNA=002-121-G03;Oryzabase=19523;Expression=AK107085;TENOR=Os11t0496400-01;KEGG=Os11t0496400-01
Chr11	irgsp1_rep	five_prime_UTR	17618035	17618036	.	-	.	Parent=Os11t0496400-01
Chr11	irgsp1_rep	CDS	17617999	17618034	.	-	0	Parent=Os11t0496400-01
Chr11	irgsp1_rep	CDS	17617776	17617900	.	-	0	Parent=Os11t0496400-01
Chr11	irgsp1_rep	CDS	17617577	17617677	.	-	1	Parent=Os11t0496400-01
Chr11	irgsp1_rep	CDS	17617371	17617456	.	-	2	Parent=Os11t0496400-01
Chr11	irgsp1_rep	CDS	17617166	17617256	.	-	0	Parent=Os11t0496400-01
Chr11	irgsp1_rep	CDS	17616826	17617055	.	-	2	Parent=Os11t0496400-01
Chr11	irgsp1_rep	three_prime_UTR	17616598	17616825	.	-	.	Parent=Os11t0496400-01
Chr11	irgsp1_rep	mRNA	17625788	17626349	.	+	.	ID=Os11t0496500-01;Name=Os11t0496500-01;Locus_id=Os11g0496500;Note=Similar to AT.I.24-5 protein (Fragment).;Transcript_evidence=AK062973 (DDBJ%2C Best hit);ORF_evidence=Q01LF6 (UniProt);InterPro=Protein of unknown function DUF3339 (IPR021775);NIAS_FLcDNA=001-109-E07;Expression=AK062973;TENOR=Os11t0496500-01;KEGG=Os11t0496500-01
Chr11	irgsp1_rep	five_prime_UTR	17625788	17625889	.	+	.	Parent=Os11t0496500-01
Chr11	irgsp1_rep	CDS	17625890	17626099	.	+	0	Parent=Os11t0496500-01
Chr11	irgsp1_rep	three_prime_UTR	17626100	17626349	.	+	.	Parent=Os11t0496500-01
Chr11	irgsp1_rep	mRNA	17631574	17640991	.	-	.	ID=Os11t0496600-00;Name=Os11t0496600-00;Locus_id=Os11g0496600;CGSNL Gene Symbol=SPL19;CGSNL Gene Name=RICE SQUAMOSA PROMOTER-BINDING-LIKE 19;Oryzabase Gene Symbol Synonym(s)=OsSPL19;Oryzabase Gene Name Synonym(s)=Squamosa promoter-binding-like protein 19;Note=Hypothetical conserved gene.;Transcript_evidence=EU975549 (DDBJ);ORF_evidence=C0P8S5 (UniProt);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Transcription factor%2C SBP-box (IPR004333);Oryzabase=11243;TENOR=Os11t0496600-00;KEGG=Os11t0496600-00
Chr11	irgsp1_rep	CDS	17640576	17640991	.	-	0	Parent=Os11t0496600-00
Chr11	irgsp1_rep	CDS	17632653	17632783	.	-	1	Parent=Os11t0496600-00
Chr11	irgsp1_rep	CDS	17631609	17632120	.	-	2	Parent=Os11t0496600-00
Chr11	irgsp1_rep	three_prime_UTR	17631574	17631608	.	-	.	Parent=Os11t0496600-00
Chr11	irgsp1_rep	mRNA	17670502	17676701	.	+	.	ID=Os11t0497000-01;Name=Os11t0497000-01;Locus_id=Os11g0497000;CGSNL Gene Symbol=SAE1;CGSNL Gene Name=SUMO-ACTIVATING ENZYME 1;Oryzabase Gene Symbol Synonym(s)=OsSAE1%2C OsSAE1.1%2C OsSAE1.2%2C OsSAE1.3;Oryzabase Gene Name Synonym(s)=SUMO-activating enzyme 1%2C E1 SUMO-activating enzyme 1;Note=Similar to Ubiquitin activating enzyme-like protein (SUMO activating enzyme 1a).;Transcript_evidence=AK111924 (DDBJ%2C Best hit);ORF_evidence=B6TS17 (UniProt);GO=Biological Process: protein modification process (GO:0006464),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: small protein activating enzyme activity (GO:0008641);InterPro=Ubiquitin/SUMO-activating enzyme E1 (IPR000011),UBA/THIF-type NAD/FAD binding fold (IPR000594),Molybdenum cofactor biosynthesis%2C MoeB (IPR009036),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-013-C03;Oryzabase=22914;Expression=AK111924;TENOR=Os11t0497000-01;KEGG=Os11t0497000-01 (EC:6.3.2.19)
Chr11	irgsp1_rep	five_prime_UTR	17670502	17670615	.	+	.	Parent=Os11t0497000-01
Chr11	irgsp1_rep	CDS	17670616	17670713	.	+	0	Parent=Os11t0497000-01
Chr11	irgsp1_rep	CDS	17671221	17671272	.	+	1	Parent=Os11t0497000-01
Chr11	irgsp1_rep	CDS	17672131	17672326	.	+	0	Parent=Os11t0497000-01
Chr11	irgsp1_rep	CDS	17672701	17672780	.	+	2	Parent=Os11t0497000-01
Chr11	irgsp1_rep	CDS	17672924	17673040	.	+	0	Parent=Os11t0497000-01
Chr11	irgsp1_rep	CDS	17673751	17673801	.	+	0	Parent=Os11t0497000-01
Chr11	irgsp1_rep	CDS	17674870	17674936	.	+	0	Parent=Os11t0497000-01
Chr11	irgsp1_rep	CDS	17675080	17675183	.	+	2	Parent=Os11t0497000-01
Chr11	irgsp1_rep	CDS	17675261	17675368	.	+	0	Parent=Os11t0497000-01
Chr11	irgsp1_rep	CDS	17676333	17676446	.	+	0	Parent=Os11t0497000-01
Chr11	irgsp1_rep	three_prime_UTR	17676447	17676701	.	+	.	Parent=Os11t0497000-01
Chr11	irgsp1_rep	mRNA	17694769	17696076	.	+	.	ID=Os11t0497350-01;Name=Os11t0497350-01;Locus_id=Os11g0497350;RAP-DB Gene Symbol Synonym(s)=RBG1;RAP-DB Gene Name Synonym(s)=Rice Big Grain 1;CGSNL Gene Symbol=RBG1;CGSNL Gene Name=RICE BIG GRAIN 1;Oryzabase Gene Symbol Synonym(s)=OsRBG1;Oryzabase Gene Name Synonym(s)=Rice Big Grain 1;Note=Promotion of cell division%2C Regulation of grain and organ development%2C Abiotic stress tolerance;Transcript_evidence=EU968683 (maize);ORF_evidence=Q2R3X6;Manual Curation=February 10%2C 2020;Literature_PMID=32034845;Oryzabase=23454;TENOR=Os11t0497350-00;KEGG=Os11t0497350-00;Subcellular location=microtubule (GO:0005874)
Chr11	irgsp1_rep	five_prime_UTR	17694769	17694889	.	+	.	Parent=Os11t0497350-01
Chr11	irgsp1_rep	CDS	17694890	17695837	.	+	0	Parent=Os11t0497350-01
Chr11	irgsp1_rep	three_prime_UTR	17695838	17696076	.	+	.	Parent=Os11t0497350-01
Chr11	irgsp1_rep	mRNA	17722080	17725438	.	+	.	ID=Os11t0498400-01;Name=Os11t0498400-01;Locus_id=Os11g0498400;Note=Zinc finger%2C C2H2-like domain containing protein.;Transcript_evidence=AK060702 (DDBJ%2C Best hit);ORF_evidence=B8BKM4 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=001-030-G02;Expression=AK060702;TENOR=Os11t0498400-01;KEGG=Os11t0498400-01
Chr11	irgsp1_rep	five_prime_UTR	17722080	17722245	.	+	.	Parent=Os11t0498400-01
Chr11	irgsp1_rep	CDS	17722246	17722413	.	+	0	Parent=Os11t0498400-01
Chr11	irgsp1_rep	CDS	17722850	17722914	.	+	0	Parent=Os11t0498400-01
Chr11	irgsp1_rep	CDS	17724173	17724371	.	+	1	Parent=Os11t0498400-01
Chr11	irgsp1_rep	CDS	17724693	17725181	.	+	0	Parent=Os11t0498400-01
Chr11	irgsp1_rep	three_prime_UTR	17725182	17725438	.	+	.	Parent=Os11t0498400-01
Chr11	irgsp1_rep	mRNA	17729083	17730337	.	+	.	ID=Os11t0498600-01;Name=Os11t0498600-01;Locus_id=Os11g0498600;Note=Similar to HVA22 protein.;Transcript_evidence=AK071051 (DDBJ%2C Best hit);ORF_evidence=B6SRB1 (UniProt);InterPro=TB2/DP1/HVA22-related protein (IPR004345);NIAS_FLcDNA=J023076B14;Expression=AK071051;TENOR=Os11t0498600-01;KEGG=Os11t0498600-01
Chr11	irgsp1_rep	five_prime_UTR	17729083	17729175	.	+	.	Parent=Os11t0498600-01
Chr11	irgsp1_rep	CDS	17729176	17729222	.	+	0	Parent=Os11t0498600-01
Chr11	irgsp1_rep	CDS	17729349	17729375	.	+	1	Parent=Os11t0498600-01
Chr11	irgsp1_rep	CDS	17729476	17729598	.	+	1	Parent=Os11t0498600-01
Chr11	irgsp1_rep	CDS	17729702	17729945	.	+	1	Parent=Os11t0498600-01
Chr11	irgsp1_rep	CDS	17730045	17730062	.	+	0	Parent=Os11t0498600-01
Chr11	irgsp1_rep	three_prime_UTR	17730063	17730337	.	+	.	Parent=Os11t0498600-01
Chr11	irgsp1_rep	mRNA	17785138	17792386	.	+	.	ID=Os11t0499600-01;Name=Os11t0499600-01;Locus_id=Os11g0499600;RAP-DB Gene Symbol Synonym(s)=OsHSD1%2C LGF1;RAP-DB Gene Name Synonym(s)=Leaf Gas Film 1;CGSNL Gene Symbol=DRP7;CGSNL Gene Name=DRIPPING-WET LEAF 7;Oryzabase Gene Symbol Synonym(s)=drp7%2C OsHSD1%2C LGF1%2C HSD1;Oryzabase Gene Name Synonym(s)=dripping-wet leaf7%2C dripping-wet leaf 7%2C dripping-wet leaf-7%2C hydroxysteroid dehydrogenase 1%2C Leaf Gas Film 1%2C dripping wet leaf 7;Note=Hydroxysteroid dehydrogenase%2C Cuticle formation%2C Lipid homeostasis%2C Submergence tolerance;Transcript_evidence=AK069875;ORF_evidence=Q2R3W3;GO=Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002347),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);NIAS_FLcDNA=J023036D07;Manual Curation=March 12%2C 2018;Literature_PMID=29498045,27297988;Oryzabase=933;Expression=AK069875;TENOR=Os11t0499600-01;KEGG=Os11t0499600-01
Chr11	irgsp1_rep	five_prime_UTR	17785138	17785374	.	+	.	Parent=Os11t0499600-01
Chr11	irgsp1_rep	CDS	17785375	17785572	.	+	0	Parent=Os11t0499600-01
Chr11	irgsp1_rep	CDS	17788872	17789064	.	+	0	Parent=Os11t0499600-01
Chr11	irgsp1_rep	CDS	17790043	17790128	.	+	2	Parent=Os11t0499600-01
Chr11	irgsp1_rep	CDS	17790653	17790784	.	+	0	Parent=Os11t0499600-01
Chr11	irgsp1_rep	CDS	17791460	17791624	.	+	0	Parent=Os11t0499600-01
Chr11	irgsp1_rep	CDS	17791927	17792217	.	+	0	Parent=Os11t0499600-01
Chr11	irgsp1_rep	three_prime_UTR	17792218	17792386	.	+	.	Parent=Os11t0499600-01
Chr11	irgsp1_rep	mRNA	17785388	17792540	.	+	.	ID=Os11t0499600-02;Name=Os11t0499600-02;Locus_id=Os11g0499600;CGSNL Gene Symbol=DRP7;CGSNL Gene Name=DRIPPING-WET LEAF 7;Oryzabase Gene Symbol Synonym(s)=drp7%2C OsHSD1%2C LGF1%2C HSD1;Oryzabase Gene Name Synonym(s)=dripping-wet leaf7%2C dripping-wet leaf 7%2C dripping-wet leaf-7%2C hydroxysteroid dehydrogenase 1%2C Leaf Gas Film 1%2C dripping wet leaf 7;Note=Similar to cis-2%2C3-dihydrobiphenyl-2%2C3-diol dehydrogenase.;Transcript_evidence=AK106189 (DDBJ%2C Best hit);ORF_evidence=Q2R3W2;GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);NIAS_FLcDNA=001-208-D12;Manual Curation=March 12%2C 2018;Oryzabase=933;Expression=AK106189;TENOR=Os11t0499600-02;KEGG=Os11t0499600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	17785388	17785416	.	+	.	Parent=Os11t0499600-02
Chr11	irgsp1_rep	CDS	17785417	17785572	.	+	0	Parent=Os11t0499600-02
Chr11	irgsp1_rep	CDS	17788872	17789064	.	+	0	Parent=Os11t0499600-02
Chr11	irgsp1_rep	CDS	17790043	17790128	.	+	2	Parent=Os11t0499600-02
Chr11	irgsp1_rep	CDS	17790653	17790784	.	+	0	Parent=Os11t0499600-02
Chr11	irgsp1_rep	CDS	17791460	17791624	.	+	0	Parent=Os11t0499600-02
Chr11	irgsp1_rep	CDS	17791927	17792217	.	+	0	Parent=Os11t0499600-02
Chr11	irgsp1_rep	three_prime_UTR	17792218	17792540	.	+	.	Parent=Os11t0499600-02
Chr11	irgsp1_rep	mRNA	17807490	17807907	.	-	.	ID=Os11t0500050-00;Name=Os11t0500050-00;Locus_id=Os11g0500050;Note=Similar to GRAS family transcription factor containing protein.;Transcript_evidence=EU950610 (DDBJ);ORF_evidence=NP_001147776.1 (RefSeq);InterPro=Transcription factor GRAS (IPR005202);TENOR=Os11t0500050-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	17807715	17807907	.	-	.	Parent=Os11t0500050-00
Chr11	irgsp1_rep	CDS	17807490	17807714	.	-	0	Parent=Os11t0500050-00
Chr11	irgsp1_rep	mRNA	17808526	17811943	.	+	.	ID=Os11t0500100-00;Name=Os11t0500100-00;Locus_id=Os11g0500100;Note=Similar to HAT family dimerisation domain containing protein.;Transcript_evidence=AK122139 (DDBJ%2C Secondary hit);ORF_evidence=Q2QPA8 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677);InterPro=Zinc finger%2C BED-type predicted (IPR003656),Domain of unknown function DUF659 (IPR007021),Ribonuclease H-like (IPR012337);Expression=AK122139;TENOR=Os11t0500100-00;KEGG=Os11t0500100-00
Chr11	irgsp1_rep	five_prime_UTR	17808526	17808814	.	+	.	Parent=Os11t0500100-00
Chr11	irgsp1_rep	CDS	17808815	17808830	.	+	0	Parent=Os11t0500100-00
Chr11	irgsp1_rep	CDS	17809111	17810963	.	+	2	Parent=Os11t0500100-00
Chr11	irgsp1_rep	three_prime_UTR	17810964	17811138	.	+	.	Parent=Os11t0500100-00
Chr11	irgsp1_rep	three_prime_UTR	17811256	17811469	.	+	.	Parent=Os11t0500100-00
Chr11	irgsp1_rep	three_prime_UTR	17811497	17811943	.	+	.	Parent=Os11t0500100-00
Chr11	irgsp1_rep	mRNA	17829546	17831391	.	-	.	ID=Os11t0501000-01;Name=Os11t0501000-01;Locus_id=Os11g0501000;Note=Conserved hypothetical protein.;Transcript_evidence=AK109615 (DDBJ%2C Best hit);ORF_evidence=A2ZEI2 (UniProt);NIAS_FLcDNA=002-137-G12;Expression=AK109615;TENOR=Os11t0501000-01;KEGG=Os11t0501000-01
Chr11	irgsp1_rep	five_prime_UTR	17831275	17831391	.	-	.	Parent=Os11t0501000-01
Chr11	irgsp1_rep	CDS	17831260	17831274	.	-	0	Parent=Os11t0501000-01
Chr11	irgsp1_rep	CDS	17829882	17831165	.	-	0	Parent=Os11t0501000-01
Chr11	irgsp1_rep	three_prime_UTR	17829546	17829881	.	-	.	Parent=Os11t0501000-01
Chr11	irgsp1_rep	mRNA	17856680	17858107	.	-	.	ID=Os11t0501500-01;Name=Os11t0501500-01;Locus_id=Os11g0501500;Note=Conserved hypothetical protein.;Transcript_evidence=AK109874 (DDBJ%2C Best hit);ORF_evidence=Q2R3V0 (UniProt);NIAS_FLcDNA=002-149-B09;TENOR=Os11t0501500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	17856839	17858107	.	-	0	Parent=Os11t0501500-01
Chr11	irgsp1_rep	three_prime_UTR	17856680	17856838	.	-	.	Parent=Os11t0501500-01
Chr11	irgsp1_rep	mRNA	17911046	17912013	.	+	.	ID=Os11t0502700-01;Name=Os11t0502700-01;Locus_id=Os11g0502700;Note=Glycosyl transferase%2C family 31 domain containing protein.;Transcript_evidence=AK065205 (DDBJ%2C Best hit);ORF_evidence=A2ZEI8 (UniProt);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Glycosyl transferase%2C family 31 (IPR002659);NIAS_FLcDNA=J013002F11;TENOR=Os11t0502700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	17911046	17911256	.	+	.	Parent=Os11t0502700-01
Chr11	irgsp1_rep	CDS	17911257	17911613	.	+	0	Parent=Os11t0502700-01
Chr11	irgsp1_rep	three_prime_UTR	17911614	17912013	.	+	.	Parent=Os11t0502700-01
Chr11	irgsp1_rep	mRNA	17933534	17941002	.	+	.	ID=Os11t0503400-01;Name=Os11t0503400-01;Locus_id=Os11g0503400;Note=Conserved hypothetical protein.;Transcript_evidence=AK066621 (DDBJ%2C Best hit);ORF_evidence=B8BKN2 (UniProt);NIAS_FLcDNA=J013069F04;TENOR=Os11t0503400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	17933534	17933742	.	+	.	Parent=Os11t0503400-01
Chr11	irgsp1_rep	five_prime_UTR	17933808	17933875	.	+	.	Parent=Os11t0503400-01
Chr11	irgsp1_rep	CDS	17933876	17933979	.	+	0	Parent=Os11t0503400-01
Chr11	irgsp1_rep	CDS	17934559	17935219	.	+	1	Parent=Os11t0503400-01
Chr11	irgsp1_rep	three_prime_UTR	17935220	17936105	.	+	.	Parent=Os11t0503400-01
Chr11	irgsp1_rep	three_prime_UTR	17939890	17941002	.	+	.	Parent=Os11t0503400-01
Chr11	irgsp1_rep	mRNA	17943546	17945362	.	+	.	ID=Os11t0503900-01;Name=Os11t0503900-01;Locus_id=Os11g0503900;Note=Sulfotransferase family protein.;Transcript_evidence=AK061183 (DDBJ%2C Best hit);ORF_evidence=Q2R3S7 (UniProt);GO=Molecular Function: sulfotransferase activity (GO:0008146);InterPro=Sulfotransferase domain (IPR000863);NIAS_FLcDNA=006-209-D11;Expression=AK061183;TENOR=Os11t0503900-01;KEGG=Os11t0503900-01
Chr11	irgsp1_rep	five_prime_UTR	17943546	17943592	.	+	.	Parent=Os11t0503900-01
Chr11	irgsp1_rep	CDS	17943593	17944080	.	+	0	Parent=Os11t0503900-01
Chr11	irgsp1_rep	CDS	17944673	17945171	.	+	1	Parent=Os11t0503900-01
Chr11	irgsp1_rep	three_prime_UTR	17945172	17945362	.	+	.	Parent=Os11t0503900-01
Chr11	irgsp1_rep	mRNA	17946102	17948391	.	-	.	ID=Os11t0504000-00;Name=Os11t0504000-00;Locus_id=Os11g0504000;Note=Transposase%2C Ptta/En/Spm%2C plant domain containing protein.;Transcript_evidence=AF442490 (DDBJ%2C Best hit);ORF_evidence=B9GAQ4 (UniProt);InterPro=Transposase%2C Ptta/En/Spm%2C plant (IPR004252);Expression=AF442490;TENOR=Os11t0504000-00;KEGG=Os11t0504000-00
Chr11	irgsp1_rep	five_prime_UTR	17948265	17948391	.	-	.	Parent=Os11t0504000-00
Chr11	irgsp1_rep	five_prime_UTR	17947691	17947701	.	-	.	Parent=Os11t0504000-00
Chr11	irgsp1_rep	CDS	17947650	17947690	.	-	0	Parent=Os11t0504000-00
Chr11	irgsp1_rep	CDS	17947324	17947516	.	-	1	Parent=Os11t0504000-00
Chr11	irgsp1_rep	CDS	17946892	17947251	.	-	0	Parent=Os11t0504000-00
Chr11	irgsp1_rep	CDS	17946700	17946810	.	-	0	Parent=Os11t0504000-00
Chr11	irgsp1_rep	CDS	17946264	17946389	.	-	0	Parent=Os11t0504000-00
Chr11	irgsp1_rep	three_prime_UTR	17946102	17946263	.	-	.	Parent=Os11t0504000-00
Chr11	irgsp1_rep	mRNA	17952832	17973439	.	+	.	ID=Os11t0504900-00;Name=Os11t0504900-00;Locus_id=Os11g0504900;Note=Similar to Sulfotransferase domain containing protein%2C expressed.;Transcript_evidence=AK367750 (DDBJ);ORF_evidence=Q2R3S7 (UniProt);GO=Molecular Function: sulfotransferase activity (GO:0008146);InterPro=Sulfotransferase domain (IPR000863);TENOR=Os11t0504900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	17952832	17952848	.	+	.	Parent=Os11t0504900-00
Chr11	irgsp1_rep	CDS	17952849	17953258	.	+	0	Parent=Os11t0504900-00
Chr11	irgsp1_rep	CDS	17972781	17972952	.	+	1	Parent=Os11t0504900-00
Chr11	irgsp1_rep	three_prime_UTR	17972953	17973439	.	+	.	Parent=Os11t0504900-00
Chr11	irgsp1_rep	mRNA	17985037	17986258	.	+	.	ID=Os11t0505300-01;Name=Os11t0505300-01;Locus_id=Os11g0505300;RAP-DB Gene Symbol Synonym(s)=STV11%2C OsSOT1;RAP-DB Gene Name Synonym(s)=sulfotransferase 1%2C RSV (Rice stripe virus) resistance quantitative trait locus on Chromosome 11;Oryzabase Gene Symbol Synonym(s)=STV11%2C OsSOT1;Oryzabase Gene Name Synonym(s)=sulfotransferase 1%2C RSV (Rice stripe virus) resistance quantitative trait locus on Chromosome 11;Note=Sulfotransferase%2C Resistance to rice stripe virus;Transcript_evidence=AK061003;ORF_evidence=C7J8Z7;GO=Molecular Function: sulfotransferase activity (GO:0008146);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),Sulfotransferase domain (IPR000863);NIAS_FLcDNA=006-203-H02;Manual Curation=July 7%2C 2015;Literature_PMID=25203424;Oryzabase=18484;TENOR=Os11t0505300-01
Chr11	irgsp1_rep	five_prime_UTR	17985037	17985067	.	+	.	Parent=Os11t0505300-01
Chr11	irgsp1_rep	CDS	17985068	17986198	.	+	0	Parent=Os11t0505300-01
Chr11	irgsp1_rep	three_prime_UTR	17986199	17986258	.	+	.	Parent=Os11t0505300-01
Chr11	irgsp1_rep	mRNA	18001754	18002609	.	-	.	ID=Os11t0506150-00;Name=Os11t0506150-00;Locus_id=Os11g0506150;Note=Conserved hypothetical protein.;Transcript_evidence=U59313 (DDBJ);ORF_evidence=Q2R3S3 (UniProt);TENOR=Os11t0506150-00
Chr11	irgsp1_rep	CDS	18002055	18002609	.	-	0	Parent=Os11t0506150-00
Chr11	irgsp1_rep	three_prime_UTR	18001754	18001951	.	-	.	Parent=Os11t0506150-00
Chr11	irgsp1_rep	mRNA	18036285	18046195	.	-	.	ID=Os11t0506300-00;Name=Os11t0506300-00;Locus_id=Os11g0506300;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R3R6 (UniProt);TENOR=Os11t0506300-00;KEGG=Os11t0506300-00
Chr11	irgsp1_rep	CDS	18045837	18046195	.	-	0	Parent=Os11t0506300-00
Chr11	irgsp1_rep	CDS	18045293	18045356	.	-	1	Parent=Os11t0506300-00
Chr11	irgsp1_rep	CDS	18045051	18045203	.	-	0	Parent=Os11t0506300-00
Chr11	irgsp1_rep	CDS	18044418	18044690	.	-	0	Parent=Os11t0506300-00
Chr11	irgsp1_rep	CDS	18043971	18044045	.	-	0	Parent=Os11t0506300-00
Chr11	irgsp1_rep	CDS	18036285	18036593	.	-	0	Parent=Os11t0506300-00
Chr11	irgsp1_rep	mRNA	18051921	18052243	.	-	.	ID=Os11t0506400-00;Name=Os11t0506400-00;Locus_id=Os11g0506400;Note=Similar to Calmodulin.;Transcript_evidence=AK249909 (DDBJ);ORF_evidence=Q9LDQ9 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand-like domain (IPR011992);TENOR=Os11t0506400-00
Chr11	irgsp1_rep	five_prime_UTR	18052113	18052243	.	-	.	Parent=Os11t0506400-00
Chr11	irgsp1_rep	CDS	18051921	18052112	.	-	0	Parent=Os11t0506400-00
Chr11	irgsp1_rep	mRNA	18069286	18071596	.	+	.	ID=Os11t0506700-00;Name=Os11t0506700-00;Locus_id=Os11g0506700;Note=Similar to ATPase%2C coupled to transmembrane movement of substances.;Transcript_evidence=AK363210 (DDBJ);ORF_evidence=NP_001147989.1 (RefSeq);TENOR=Os11t0506700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	18069286	18069654	.	+	0	Parent=Os11t0506700-00
Chr11	irgsp1_rep	three_prime_UTR	18069655	18069660	.	+	.	Parent=Os11t0506700-00
Chr11	irgsp1_rep	three_prime_UTR	18070627	18071596	.	+	.	Parent=Os11t0506700-00
Chr11	irgsp1_rep	mRNA	18070313	18071749	.	-	.	ID=Os11t0506800-00;Name=Os11t0506800-00;Locus_id=Os11g0506800;CGSNL Gene Symbol=BAG5;CGSNL Gene Name=BCL-2-ASSOCIATED ATHANOGENE 5;Oryzabase Gene Symbol Synonym(s)=OsBAG5;Oryzabase Gene Name Synonym(s)=Bcl-2-associated athanogene 5;Note=Similar to BAG domain containing protein.;Transcript_evidence=FP100206 (DDBJ);ORF_evidence=B6UF50 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: chaperone binding (GO:0051087);InterPro=IQ motif%2C EF-hand binding site (IPR000048),BAG domain (IPR003103);Oryzabase=11553;TENOR=Os11t0506800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	18070382	18071749	.	-	0	Parent=Os11t0506800-00
Chr11	irgsp1_rep	three_prime_UTR	18070313	18070381	.	-	.	Parent=Os11t0506800-00
Chr11	irgsp1_rep	mRNA	18093188	18095604	.	+	.	ID=Os11t0507200-00;Name=Os11t0507200-00;Locus_id=Os11g0507200;Note=Similar to transferase.;Transcript_evidence=FP093790 (DDBJ);ORF_evidence=NP_001150426.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os11t0507200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	18093188	18093188	.	+	.	Parent=Os11t0507200-00
Chr11	irgsp1_rep	CDS	18093189	18093683	.	+	0	Parent=Os11t0507200-00
Chr11	irgsp1_rep	CDS	18094476	18095366	.	+	0	Parent=Os11t0507200-00
Chr11	irgsp1_rep	three_prime_UTR	18095367	18095604	.	+	.	Parent=Os11t0507200-00
Chr11	irgsp1_rep	mRNA	18096823	18102924	.	-	.	ID=Os11t0507300-00;Name=Os11t0507300-00;Locus_id=Os11g0507300;Oryzabase Gene Symbol Synonym(s)=OsRAM1%2C RAM1;Note=Similar to GRAS family transcription factor containing protein.;Transcript_evidence=AK365059 (DDBJ);ORF_evidence=Q2R3Q8 (UniProt);Oryzabase=21690;TENOR=Os11t0507300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	18101862	18102924	.	-	0	Parent=Os11t0507300-00
Chr11	irgsp1_rep	CDS	18097479	18098233	.	-	2	Parent=Os11t0507300-00
Chr11	irgsp1_rep	CDS	18096823	18097194	.	-	0	Parent=Os11t0507300-00
Chr11	irgsp1_rep	mRNA	18097773	18098256	.	+	.	ID=Os11t0507350-00;Name=Os11t0507350-00;Locus_id=Os11g0507350;Note=Hypothetical protein.;Transcript_evidence=BT085249 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0507350-00
Chr11	irgsp1_rep	five_prime_UTR	18097773	18097774	.	+	.	Parent=Os11t0507350-00
Chr11	irgsp1_rep	CDS	18097775	18098256	.	+	0	Parent=Os11t0507350-00
Chr11	irgsp1_rep	mRNA	18106978	18113191	.	-	.	ID=Os11t0507400-01;Name=Os11t0507400-01;Locus_id=Os11g0507400;Note=Conserved hypothetical protein.;Transcript_evidence=AK120224 (DDBJ%2C Best hit);ORF_evidence=B9GAV3 (UniProt);NIAS_FLcDNA=J013041O14;Expression=AK120224;TENOR=Os11t0507400-01;KEGG=Os11t0507400-01
Chr11	irgsp1_rep	five_prime_UTR	18113152	18113191	.	-	.	Parent=Os11t0507400-01
Chr11	irgsp1_rep	CDS	18112794	18113151	.	-	0	Parent=Os11t0507400-01
Chr11	irgsp1_rep	CDS	18111982	18112145	.	-	2	Parent=Os11t0507400-01
Chr11	irgsp1_rep	CDS	18111488	18111687	.	-	0	Parent=Os11t0507400-01
Chr11	irgsp1_rep	CDS	18109924	18110166	.	-	1	Parent=Os11t0507400-01
Chr11	irgsp1_rep	CDS	18109123	18109270	.	-	1	Parent=Os11t0507400-01
Chr11	irgsp1_rep	CDS	18108911	18108976	.	-	0	Parent=Os11t0507400-01
Chr11	irgsp1_rep	CDS	18107809	18107977	.	-	0	Parent=Os11t0507400-01
Chr11	irgsp1_rep	CDS	18107351	18107712	.	-	2	Parent=Os11t0507400-01
Chr11	irgsp1_rep	three_prime_UTR	18106978	18107350	.	-	.	Parent=Os11t0507400-01
Chr11	irgsp1_rep	mRNA	18107339	18110072	.	+	.	ID=Os11t0507501-01;Name=Os11t0507501-01;Locus_id=Os11g0507501;Note=Non-protein coding transcript.;Transcript_evidence=AK288514 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090042H17;TENOR=Os11t0507501-01
Chr11	irgsp1_rep	exon	18107339	18110072	.	+	.	Parent=Os11t0507501-01
Chr11	irgsp1_rep	mRNA	18121689	18121833	.	-	.	ID=Os11t0507833-00;Name=Os11t0507833-00;Locus_id=Os11g0507833;Note=Non-protein coding transcript.;Transcript_evidence=EU944490 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0507833-00
Chr11	irgsp1_rep	exon	18121689	18121833	.	-	.	Parent=Os11t0507833-00
Chr11	irgsp1_rep	mRNA	18156237	18157526	.	-	.	ID=Os11t0508301-01;Name=Os11t0508301-01;Locus_id=Os11g0508301;Note=Hypothetical gene.;Transcript_evidence=AK241250 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065129L02;TENOR=Os11t0508301-01;KEGG=Os11t0508301-01
Chr11	irgsp1_rep	five_prime_UTR	18157526	18157526	.	-	.	Parent=Os11t0508301-01
Chr11	irgsp1_rep	CDS	18157263	18157525	.	-	0	Parent=Os11t0508301-01
Chr11	irgsp1_rep	CDS	18156742	18156748	.	-	1	Parent=Os11t0508301-01
Chr11	irgsp1_rep	three_prime_UTR	18156237	18156741	.	-	.	Parent=Os11t0508301-01
Chr11	irgsp1_rep	mRNA	18171707	18174478	.	-	.	ID=Os11t0508600-01;Name=Os11t0508600-01;Locus_id=Os11g0508600;RAP-DB Gene Symbol Synonym(s)=11N3%2C OsSWEET14%2C Os11N3%2C Os-11N3%2C Xa41(t);RAP-DB Gene Name Synonym(s)=11N3%2C Xanthomonas oryzae pv. oryzae resistance 41;CGSNL Gene Symbol=11N3;CGSNL Gene Name=11N3;Oryzabase Gene Symbol Synonym(s)=OsSWEET14%2C SWEET14%2C Os11N3%2C Os-11N3%2C Xa41(t)%2C xa41%2C Os11N3/SWEET14;Oryzabase Gene Name Synonym(s)=Xanthomonas oryzae pv. oryzae resistance 41;Note=Sugar transporter%2C TAL effector-mediated susceptibility to bacterial pathogen;Transcript_evidence=AK101913;ORF_evidence=Q2R3P9;GO=Cellular Component: integral component of membrane (GO:0016021);InterPro=SWEET sugar transporter%2C plants (IPR018179);NIAS_FLcDNA=J033071H09;Manual Curation=September 19%2C 2014;Literature_PMID=21098734,23879865;Oryzabase=9105;TENOR=Os11t0508600-01;KEGG=Os11t0508600-01
Chr11	irgsp1_rep	five_prime_UTR	18174251	18174478	.	-	.	Parent=Os11t0508600-01
Chr11	irgsp1_rep	CDS	18174199	18174250	.	-	0	Parent=Os11t0508600-01
Chr11	irgsp1_rep	CDS	18173429	18173465	.	-	2	Parent=Os11t0508600-01
Chr11	irgsp1_rep	CDS	18172760	18173132	.	-	1	Parent=Os11t0508600-01
Chr11	irgsp1_rep	CDS	18172541	18172660	.	-	0	Parent=Os11t0508600-01
Chr11	irgsp1_rep	CDS	18172059	18172388	.	-	0	Parent=Os11t0508600-01
Chr11	irgsp1_rep	three_prime_UTR	18171707	18172058	.	-	.	Parent=Os11t0508600-01
Chr11	irgsp1_rep	mRNA	18288358	18290720	.	+	.	ID=Os11t0512000-01;Name=Os11t0512000-01;Locus_id=Os11g0512000;RAP-DB Gene Symbol Synonym(s)=ONAC025%2C SS1%2C SS1/ ONAC025;RAP-DB Gene Name Synonym(s)=SUPER STARCHY1;CGSNL Gene Symbol=NAC25;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 25;Oryzabase Gene Symbol Synonym(s)=ONAC025%2C ONAC25%2C OsEnS-144;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 025%2C NAC domain-containing protein 25%2C endosperm-specific gene 144;Note=NAC transcription factor%2C Promotion of grain filling%2C Seed development;Transcript_evidence=AK107369;ORF_evidence=Q2R3N5;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=NAC domain superfamily (IPR036093),NAC domain (IPR003441);NIAS_FLcDNA=002-127-B02;Manual Curation=October 2%2C 2020;Literature_PMID=32995698;Oryzabase=11471;Expression=AK107369;TENOR=Os11t0512000-01;KEGG=Os11t0512000-01;Subcellular location=endoplasmic reticulum (GO:0005783) [mainly],nucleus (GO:0005634)
Chr11	irgsp1_rep	five_prime_UTR	18288358	18288459	.	+	.	Parent=Os11t0512000-01
Chr11	irgsp1_rep	CDS	18288460	18288655	.	+	0	Parent=Os11t0512000-01
Chr11	irgsp1_rep	CDS	18288824	18289167	.	+	2	Parent=Os11t0512000-01
Chr11	irgsp1_rep	CDS	18290003	18290365	.	+	0	Parent=Os11t0512000-01
Chr11	irgsp1_rep	three_prime_UTR	18290366	18290720	.	+	.	Parent=Os11t0512000-01
Chr11	irgsp1_rep	mRNA	18294409	18296934	.	+	.	ID=Os11t0512100-01;Name=Os11t0512100-01;Locus_id=Os11g0512100;CGSNL Gene Symbol=NAC127;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 127;Oryzabase Gene Symbol Synonym(s)=ONAC127%2C OsEnS-145;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 127%2C endosperm-specific gene 145;Note=Similar to No apical meristem protein%2C expressed.;Transcript_evidence=AK242010 (DDBJ%2C Best hit);ORF_evidence=Q2R3N2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=J075106F03;Oryzabase=15887;TENOR=Os11t0512100-01;KEGG=Os11t0512100-01
Chr11	irgsp1_rep	five_prime_UTR	18294409	18294490	.	+	.	Parent=Os11t0512100-01
Chr11	irgsp1_rep	CDS	18294491	18294665	.	+	0	Parent=Os11t0512100-01
Chr11	irgsp1_rep	CDS	18294835	18295178	.	+	2	Parent=Os11t0512100-01
Chr11	irgsp1_rep	CDS	18296263	18296577	.	+	0	Parent=Os11t0512100-01
Chr11	irgsp1_rep	three_prime_UTR	18296578	18296934	.	+	.	Parent=Os11t0512100-01
Chr11	irgsp1_rep	mRNA	18301326	18301992	.	+	.	ID=Os11t0512200-00;Name=Os11t0512200-00;Locus_id=Os11g0512200;CGSNL Gene Symbol=NAC128;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 128;Oryzabase Gene Symbol Synonym(s)=ONAC128;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 128;Note=Similar to No apical meristem protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R3N2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);Oryzabase=15888;TENOR=Os11t0512200-00;KEGG=Os11t0512200-00
Chr11	irgsp1_rep	CDS	18301326	18301521	.	+	0	Parent=Os11t0512200-00
Chr11	irgsp1_rep	CDS	18301703	18301992	.	+	2	Parent=Os11t0512200-00
Chr11	irgsp1_rep	mRNA	18311673	18314023	.	+	.	ID=Os11t0512600-00;Name=Os11t0512600-00;Locus_id=Os11g0512600;CGSNL Gene Symbol=NAC129;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 129;Oryzabase Gene Symbol Synonym(s)=ONAC129;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 129;Note=Similar to No apical meristem protein.;Transcript_evidence=FJ940196 (DDBJ%2C Best hit);ORF_evidence=Q2R3N0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);Oryzabase=15889;TENOR=Os11t0512600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	18311673	18311954	.	+	.	Parent=Os11t0512600-00
Chr11	irgsp1_rep	five_prime_UTR	18312149	18312162	.	+	.	Parent=Os11t0512600-00
Chr11	irgsp1_rep	CDS	18312163	18312498	.	+	0	Parent=Os11t0512600-00
Chr11	irgsp1_rep	CDS	18313368	18313703	.	+	0	Parent=Os11t0512600-00
Chr11	irgsp1_rep	three_prime_UTR	18313704	18314023	.	+	.	Parent=Os11t0512600-00
Chr11	irgsp1_rep	mRNA	18321542	18322437	.	+	.	ID=Os11t0512800-01;Name=Os11t0512800-01;Locus_id=Os11g0512800;Note=Conserved hypothetical protein.;Transcript_evidence=AK064740 (DDBJ%2C Best hit);ORF_evidence=A2ZEN0 (UniProt);NIAS_FLcDNA=002-120-D06;Expression=AK064740;TENOR=Os11t0512800-01;KEGG=Os11t0512800-01
Chr11	irgsp1_rep	five_prime_UTR	18321542	18321603	.	+	.	Parent=Os11t0512800-01
Chr11	irgsp1_rep	CDS	18321604	18321939	.	+	0	Parent=Os11t0512800-01
Chr11	irgsp1_rep	three_prime_UTR	18321940	18321972	.	+	.	Parent=Os11t0512800-01
Chr11	irgsp1_rep	three_prime_UTR	18322118	18322437	.	+	.	Parent=Os11t0512800-01
Chr11	irgsp1_rep	mRNA	18337730	18342838	.	-	.	ID=Os11t0513000-01;Name=Os11t0513000-01;Locus_id=Os11g0513000;Note=Hypothetical conserved gene.;Transcript_evidence=AK243369 (DDBJ%2C Best hit);ORF_evidence=A3CBN5 (UniProt);NIAS_FLcDNA=J100062D04;TENOR=Os11t0513000-01;KEGG=Os11t0513000-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	18342392	18342838	.	-	.	Parent=Os11t0513000-01
Chr11	irgsp1_rep	five_prime_UTR	18340930	18340937	.	-	.	Parent=Os11t0513000-01
Chr11	irgsp1_rep	CDS	18340868	18340929	.	-	0	Parent=Os11t0513000-01
Chr11	irgsp1_rep	CDS	18340748	18340778	.	-	1	Parent=Os11t0513000-01
Chr11	irgsp1_rep	CDS	18340296	18340657	.	-	0	Parent=Os11t0513000-01
Chr11	irgsp1_rep	CDS	18339583	18339794	.	-	1	Parent=Os11t0513000-01
Chr11	irgsp1_rep	CDS	18339106	18339238	.	-	2	Parent=Os11t0513000-01
Chr11	irgsp1_rep	CDS	18338738	18339023	.	-	1	Parent=Os11t0513000-01
Chr11	irgsp1_rep	CDS	18338206	18338337	.	-	0	Parent=Os11t0513000-01
Chr11	irgsp1_rep	three_prime_UTR	18338058	18338205	.	-	.	Parent=Os11t0513000-01
Chr11	irgsp1_rep	three_prime_UTR	18337730	18337963	.	-	.	Parent=Os11t0513000-01
Chr11	irgsp1_rep	mRNA	18358013	18360301	.	+	.	ID=Os11t0513500-00;Name=Os11t0513500-00;Locus_id=Os11g0513500;Note=Conserved hypothetical protein.;Transcript_evidence=AY224562 (DDBJ%2C Best hit);ORF_evidence=Q2R3M5 (UniProt);Expression=AY224562;TENOR=Os11t0513500-00;KEGG=Os11t0513500-00
Chr11	irgsp1_rep	CDS	18358013	18358084	.	+	0	Parent=Os11t0513500-00
Chr11	irgsp1_rep	CDS	18359068	18359169	.	+	0	Parent=Os11t0513500-00
Chr11	irgsp1_rep	CDS	18359262	18359351	.	+	0	Parent=Os11t0513500-00
Chr11	irgsp1_rep	CDS	18359445	18359525	.	+	0	Parent=Os11t0513500-00
Chr11	irgsp1_rep	CDS	18359754	18359834	.	+	0	Parent=Os11t0513500-00
Chr11	irgsp1_rep	CDS	18359943	18360038	.	+	0	Parent=Os11t0513500-00
Chr11	irgsp1_rep	CDS	18360119	18360175	.	+	0	Parent=Os11t0513500-00
Chr11	irgsp1_rep	CDS	18360257	18360301	.	+	0	Parent=Os11t0513500-00
Chr11	irgsp1_rep	mRNA	18372832	18378851	.	-	.	ID=Os11t0513700-01;Name=Os11t0513700-01;Locus_id=Os11g0513700;Note=Protein kinase-like domain containing protein.;Transcript_evidence=AK070622 (DDBJ%2C Best hit);ORF_evidence=A2ZEN3 (UniProt);NIAS_FLcDNA=J023059G14;Expression=AK070622;TENOR=Os11t0513700-01;KEGG=Os11t0513700-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	18378522	18378851	.	-	.	Parent=Os11t0513700-01
Chr11	irgsp1_rep	five_prime_UTR	18376708	18376715	.	-	.	Parent=Os11t0513700-01
Chr11	irgsp1_rep	CDS	18376646	18376707	.	-	0	Parent=Os11t0513700-01
Chr11	irgsp1_rep	CDS	18376509	18376539	.	-	1	Parent=Os11t0513700-01
Chr11	irgsp1_rep	CDS	18376052	18376413	.	-	0	Parent=Os11t0513700-01
Chr11	irgsp1_rep	CDS	18374626	18374837	.	-	1	Parent=Os11t0513700-01
Chr11	irgsp1_rep	CDS	18374159	18374294	.	-	2	Parent=Os11t0513700-01
Chr11	irgsp1_rep	CDS	18373793	18374078	.	-	1	Parent=Os11t0513700-01
Chr11	irgsp1_rep	CDS	18373483	18373605	.	-	0	Parent=Os11t0513700-01
Chr11	irgsp1_rep	CDS	18373389	18373406	.	-	0	Parent=Os11t0513700-01
Chr11	irgsp1_rep	three_prime_UTR	18373354	18373388	.	-	.	Parent=Os11t0513700-01
Chr11	irgsp1_rep	three_prime_UTR	18372832	18373228	.	-	.	Parent=Os11t0513700-01
Chr11	irgsp1_rep	mRNA	18382053	18390444	.	+	.	ID=Os11t0513900-01;Name=Os11t0513900-01;Locus_id=Os11g0513900;Note=Conserved hypothetical protein.;Transcript_evidence=AK101049 (DDBJ%2C Best hit);ORF_evidence=Q2R3M1 (UniProt);NIAS_FLcDNA=J033009I14;Expression=AK101049;TENOR=Os11t0513900-01;KEGG=Os11t0513900-01
Chr11	irgsp1_rep	five_prime_UTR	18382053	18382370	.	+	.	Parent=Os11t0513900-01
Chr11	irgsp1_rep	CDS	18382371	18382613	.	+	0	Parent=Os11t0513900-01
Chr11	irgsp1_rep	CDS	18382845	18382952	.	+	0	Parent=Os11t0513900-01
Chr11	irgsp1_rep	CDS	18383224	18383309	.	+	0	Parent=Os11t0513900-01
Chr11	irgsp1_rep	CDS	18383384	18383645	.	+	1	Parent=Os11t0513900-01
Chr11	irgsp1_rep	CDS	18383759	18383958	.	+	0	Parent=Os11t0513900-01
Chr11	irgsp1_rep	CDS	18384356	18384850	.	+	1	Parent=Os11t0513900-01
Chr11	irgsp1_rep	CDS	18384956	18385232	.	+	1	Parent=Os11t0513900-01
Chr11	irgsp1_rep	CDS	18385463	18385597	.	+	0	Parent=Os11t0513900-01
Chr11	irgsp1_rep	CDS	18385718	18385798	.	+	0	Parent=Os11t0513900-01
Chr11	irgsp1_rep	CDS	18386149	18386244	.	+	0	Parent=Os11t0513900-01
Chr11	irgsp1_rep	CDS	18386318	18386407	.	+	0	Parent=Os11t0513900-01
Chr11	irgsp1_rep	CDS	18386499	18386594	.	+	0	Parent=Os11t0513900-01
Chr11	irgsp1_rep	CDS	18386672	18386728	.	+	0	Parent=Os11t0513900-01
Chr11	irgsp1_rep	CDS	18386805	18386873	.	+	0	Parent=Os11t0513900-01
Chr11	irgsp1_rep	CDS	18386992	18387078	.	+	0	Parent=Os11t0513900-01
Chr11	irgsp1_rep	CDS	18387372	18387473	.	+	0	Parent=Os11t0513900-01
Chr11	irgsp1_rep	CDS	18387568	18387657	.	+	0	Parent=Os11t0513900-01
Chr11	irgsp1_rep	CDS	18387738	18387818	.	+	0	Parent=Os11t0513900-01
Chr11	irgsp1_rep	CDS	18388411	18388491	.	+	0	Parent=Os11t0513900-01
Chr11	irgsp1_rep	CDS	18388599	18388694	.	+	0	Parent=Os11t0513900-01
Chr11	irgsp1_rep	CDS	18388775	18388831	.	+	0	Parent=Os11t0513900-01
Chr11	irgsp1_rep	CDS	18388931	18388975	.	+	0	Parent=Os11t0513900-01
Chr11	irgsp1_rep	CDS	18389056	18389121	.	+	0	Parent=Os11t0513900-01
Chr11	irgsp1_rep	CDS	18389817	18389869	.	+	0	Parent=Os11t0513900-01
Chr11	irgsp1_rep	CDS	18390104	18390146	.	+	1	Parent=Os11t0513900-01
Chr11	irgsp1_rep	three_prime_UTR	18390147	18390444	.	+	.	Parent=Os11t0513900-01
Chr11	irgsp1_rep	mRNA	18391479	18399504	.	-	.	ID=Os11t0514000-01;Name=Os11t0514000-01;Locus_id=Os11g0514000;RAP-DB Gene Symbol Synonym(s)=stvb-j%2C Stvb-i%2C ST07i;CGSNL Gene Symbol=STVB;CGSNL Gene Name=STRIPE DISEASE RESISTANCE B;Oryzabase Gene Symbol Synonym(s)=Stvb(St2)%2C St2%2C Stvb%2C Stv2;Oryzabase Gene Name Synonym(s)=Stripe disease resistance%2C Stripe disease resistance-b%2C Stripe disease resistance-2%2C STRIPE DISEASE RESISTANCE;Note=Resistance to Rice stripe virus (RSV)%2C Protection of plant growth from heat stress%2C (Nipponbare: RSV-susceptible);Transcript_evidence=Inferred from literature;ORF_evidence=Q2R3L9;InterPro=Histidine kinase/HSP90-like ATPase superfamily (IPR036890);Manual Curation=May 11%2C 2020;Literature_PMID=32457773;Oryzabase=913;TENOR=Os11t0514000-00
Chr11	irgsp1_rep	CDS	18399316	18399504	.	-	0	Parent=Os11t0514000-01
Chr11	irgsp1_rep	CDS	18398252	18398462	.	-	0	Parent=Os11t0514000-01
Chr11	irgsp1_rep	CDS	18392048	18396751	.	-	2	Parent=Os11t0514000-01
Chr11	irgsp1_rep	CDS	18391933	18391952	.	-	2	Parent=Os11t0514000-01
Chr11	irgsp1_rep	three_prime_UTR	18391885	18391932	.	-	.	Parent=Os11t0514000-01
Chr11	irgsp1_rep	three_prime_UTR	18391479	18391727	.	-	.	Parent=Os11t0514000-01
Chr11	irgsp1_rep	mRNA	18409735	18416541	.	-	.	ID=Os11t0514100-01;Name=Os11t0514100-01;Locus_id=Os11g0514100;RAP-DB Gene Symbol Synonym(s)=ST01;Note=Stvb-i paralog;Transcript_evidence=Inferred from literature;ORF_evidence=Q0ISI8;InterPro=Histidine kinase/HSP90-like ATPase superfamily (IPR036890);Manual Curation=May 11%2C 2020;Literature_PMID=32457773;TENOR=Os11t0514100-00;KEGG=Os11t0514100-00
Chr11	irgsp1_rep	CDS	18416380	18416541	.	-	0	Parent=Os11t0514100-01
Chr11	irgsp1_rep	CDS	18415164	18415374	.	-	0	Parent=Os11t0514100-01
Chr11	irgsp1_rep	CDS	18410036	18414447	.	-	2	Parent=Os11t0514100-01
Chr11	irgsp1_rep	CDS	18409735	18409974	.	-	0	Parent=Os11t0514100-01
Chr11	irgsp1_rep	mRNA	18426136	18428231	.	-	.	ID=Os11t0514400-01;Name=Os11t0514400-01;Locus_id=Os11g0514400;RAP-DB Gene Symbol Synonym(s)=OsBDG1;RAP-DB Gene Name Synonym(s)=OsBUL1 DOWNSTREAM GENE1;Oryzabase Gene Symbol Synonym(s)=OsBDG1%2C BDG1;Oryzabase Gene Name Synonym(s)=OsBUL1 DOWNSTREAM GENE1%2C OsBUL1 DOWNSTREAM GENE 1%2C BUL1 DOWNSTREAM GENE1%2C BUL1 DOWNSTREAM GENE 1;Note=Small leucine rich repeat (LRR) protein%2C Cell elongation activity%2C Regulation of lamina inclination and grain size;Transcript_evidence=EU956026 (maize);ORF_evidence=A0A0P0Y2U8;GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat domain superfamily (IPR032675),Leucine-rich repeat-containing N-terminal%2C plant-type (IPR013210),Leucine-rich repeat (IPR001611);Manual Curation=July 13%2C 2020;Literature_PMID=28769958;Oryzabase=21145;TENOR=Os11t0514400-00;Subcellular location=cytoplasm (GO:0005737), nucleus (GO:0005634)
Chr11	irgsp1_rep	five_prime_UTR	18428194	18428231	.	-	.	Parent=Os11t0514400-01
Chr11	irgsp1_rep	CDS	18428115	18428193	.	-	0	Parent=Os11t0514400-01
Chr11	irgsp1_rep	CDS	18427881	18428013	.	-	2	Parent=Os11t0514400-01
Chr11	irgsp1_rep	CDS	18427226	18427297	.	-	1	Parent=Os11t0514400-01
Chr11	irgsp1_rep	CDS	18426945	18427088	.	-	1	Parent=Os11t0514400-01
Chr11	irgsp1_rep	CDS	18426559	18426639	.	-	1	Parent=Os11t0514400-01
Chr11	irgsp1_rep	CDS	18426400	18426452	.	-	1	Parent=Os11t0514400-01
Chr11	irgsp1_rep	CDS	18426219	18426259	.	-	2	Parent=Os11t0514400-01
Chr11	irgsp1_rep	three_prime_UTR	18426136	18426218	.	-	.	Parent=Os11t0514400-01
Chr11	irgsp1_rep	mRNA	18430464	18432555	.	-	.	ID=Os11t0514500-01;Name=Os11t0514500-01;Locus_id=Os11g0514500;Note=Sorghum bicolor leucine-rich repeat-containing extracellular glycoprotein precursor.;Transcript_evidence=AK243599 (DDBJ%2C Best hit);ORF_evidence=NP_001147358.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J100084L14;TENOR=Os11t0514500-01;KEGG=Os11t0514500-01
Chr11	irgsp1_rep	five_prime_UTR	18432519	18432555	.	-	.	Parent=Os11t0514500-01
Chr11	irgsp1_rep	CDS	18432434	18432518	.	-	0	Parent=Os11t0514500-01
Chr11	irgsp1_rep	CDS	18432187	18432319	.	-	2	Parent=Os11t0514500-01
Chr11	irgsp1_rep	CDS	18431821	18431892	.	-	1	Parent=Os11t0514500-01
Chr11	irgsp1_rep	CDS	18431605	18431748	.	-	1	Parent=Os11t0514500-01
Chr11	irgsp1_rep	CDS	18431362	18431505	.	-	1	Parent=Os11t0514500-01
Chr11	irgsp1_rep	CDS	18430959	18431039	.	-	1	Parent=Os11t0514500-01
Chr11	irgsp1_rep	CDS	18430797	18430849	.	-	1	Parent=Os11t0514500-01
Chr11	irgsp1_rep	CDS	18430667	18430707	.	-	2	Parent=Os11t0514500-01
Chr11	irgsp1_rep	three_prime_UTR	18430464	18430666	.	-	.	Parent=Os11t0514500-01
Chr11	irgsp1_rep	mRNA	18443855	18445713	.	-	.	ID=Os11t0514700-00;Name=Os11t0514700-00;Locus_id=Os11g0514700;Note=Similar to BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1.;Transcript_evidence=U62279 (DDBJ);ORF_evidence=NP_001147358.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);TENOR=Os11t0514700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	18445560	18445713	.	-	0	Parent=Os11t0514700-00
Chr11	irgsp1_rep	CDS	18445332	18445464	.	-	2	Parent=Os11t0514700-00
Chr11	irgsp1_rep	CDS	18444759	18444830	.	-	1	Parent=Os11t0514700-00
Chr11	irgsp1_rep	CDS	18444523	18444666	.	-	1	Parent=Os11t0514700-00
Chr11	irgsp1_rep	CDS	18444274	18444417	.	-	1	Parent=Os11t0514700-00
Chr11	irgsp1_rep	CDS	18443876	18443957	.	-	1	Parent=Os11t0514700-00
Chr11	irgsp1_rep	three_prime_UTR	18443855	18443875	.	-	.	Parent=Os11t0514700-00
Chr11	irgsp1_rep	mRNA	18448294	18451677	.	-	.	ID=Os11t0514800-01;Name=Os11t0514800-01;Locus_id=Os11g0514800;Note=BRO1 domain domain containing protein.;Transcript_evidence=AK064017 (DDBJ%2C Best hit),AK099379 (DDBJ%2C Best hit);ORF_evidence=B8BKQ8 (UniProt);InterPro=BRO1 domain (IPR004328);NIAS_FLcDNA=001-124-H08,J033070C22;Expression=AK064017;TENOR=Os11t0514800-01;KEGG=Os11t0514800-01
Chr11	irgsp1_rep	five_prime_UTR	18451562	18451677	.	-	.	Parent=Os11t0514800-01
Chr11	irgsp1_rep	five_prime_UTR	18450965	18451002	.	-	.	Parent=Os11t0514800-01
Chr11	irgsp1_rep	CDS	18450748	18450964	.	-	0	Parent=Os11t0514800-01
Chr11	irgsp1_rep	CDS	18450557	18450640	.	-	2	Parent=Os11t0514800-01
Chr11	irgsp1_rep	CDS	18450418	18450473	.	-	2	Parent=Os11t0514800-01
Chr11	irgsp1_rep	CDS	18450196	18450331	.	-	0	Parent=Os11t0514800-01
Chr11	irgsp1_rep	CDS	18449867	18449963	.	-	2	Parent=Os11t0514800-01
Chr11	irgsp1_rep	CDS	18449701	18449767	.	-	1	Parent=Os11t0514800-01
Chr11	irgsp1_rep	CDS	18449489	18449587	.	-	0	Parent=Os11t0514800-01
Chr11	irgsp1_rep	CDS	18449310	18449399	.	-	0	Parent=Os11t0514800-01
Chr11	irgsp1_rep	CDS	18449062	18449216	.	-	0	Parent=Os11t0514800-01
Chr11	irgsp1_rep	CDS	18448863	18448970	.	-	1	Parent=Os11t0514800-01
Chr11	irgsp1_rep	CDS	18448515	18448680	.	-	1	Parent=Os11t0514800-01
Chr11	irgsp1_rep	three_prime_UTR	18448294	18448514	.	-	.	Parent=Os11t0514800-01
Chr11	irgsp1_rep	mRNA	18463748	18464053	.	-	.	ID=Os11t0514900-01;Name=Os11t0514900-01;Locus_id=Os11g0514900;Note=Hypothetical conserved gene.;Transcript_evidence=AK058818 (DDBJ%2C Best hit);ORF_evidence=Q2R3K9 (UniProt);NIAS_FLcDNA=001-003-G03;Expression=AK058818;TENOR=Os11t0514900-01;KEGG=Os11t0514900-01
Chr11	irgsp1_rep	five_prime_UTR	18463916	18464053	.	-	.	Parent=Os11t0514900-01
Chr11	irgsp1_rep	CDS	18463787	18463915	.	-	0	Parent=Os11t0514900-01
Chr11	irgsp1_rep	three_prime_UTR	18463748	18463786	.	-	.	Parent=Os11t0514900-01
Chr11	irgsp1_rep	mRNA	18464220	18465647	.	-	.	ID=Os11t0515000-00;Name=Os11t0515000-00;Locus_id=Os11g0515000;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001067970.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);TENOR=Os11t0515000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	18464220	18465647	.	-	0	Parent=Os11t0515000-00
Chr11	irgsp1_rep	mRNA	18485308	18490843	.	-	.	ID=Os11t0515500-01;Name=Os11t0515500-01;Locus_id=Os11g0515500;RAP-DB Gene Symbol Synonym(s)=FBL55%2C OsAFB3;RAP-DB Gene Name Synonym(s)=F-Box domain and LRR-containing protein 55%2C Auxin-signaling F-Box 3;Oryzabase Gene Symbol Synonym(s)=Os_F0720%2C FBL55%2C OsFBL55;Oryzabase Gene Name Synonym(s)=F-Box domain and LRR-containing protein 55;Note=Transport inhibitor response 1 (TIR1)-like protein%2C Target of siR109944 (small interfering RNA);Transcript_evidence=AK072358,AK105629;ORF_evidence=Q2R3K5;InterPro=Leucine-rich repeat domain superfamily (IPR032675),COI1%2C F-box (IPR041567),Transport inhibitor response 1 domain (IPR041101),Leucine-rich repeat%2C cysteine-containing subtype (IPR006553);NIAS_FLcDNA=J023056H23,001-200-D04;Manual Curation=November 4%2C 2020;Literature_PMID=33135782,31923320;Oryzabase=17463;TENOR=Os11t0515500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=cytoplasm (GO:0005737)
Chr11	irgsp1_rep	five_prime_UTR	18490689	18490843	.	-	.	Parent=Os11t0515500-01
Chr11	irgsp1_rep	five_prime_UTR	18490413	18490509	.	-	.	Parent=Os11t0515500-01
Chr11	irgsp1_rep	CDS	18489976	18490412	.	-	0	Parent=Os11t0515500-01
Chr11	irgsp1_rep	CDS	18488170	18488665	.	-	1	Parent=Os11t0515500-01
Chr11	irgsp1_rep	CDS	18486337	18487110	.	-	0	Parent=Os11t0515500-01
Chr11	irgsp1_rep	three_prime_UTR	18485308	18486336	.	-	.	Parent=Os11t0515500-01
Chr11	irgsp1_rep	mRNA	18493370	18494393	.	-	.	ID=Os11t0515700-00;Name=Os11t0515700-00;Locus_id=Os11g0515700;Note=Non-protein coding transcript.;Transcript_evidence=CT828173 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os11t0515700-00
Chr11	irgsp1_rep	exon	18493370	18494393	.	-	.	Parent=Os11t0515700-00
Chr11	irgsp1_rep	mRNA	18503539	18507701	.	+	.	ID=Os11t0516000-01;Name=Os11t0516000-01;Locus_id=Os11g0516000;CGSNL Gene Symbol=LCB2A3;Oryzabase Gene Symbol Synonym(s)=OsLCB2a3%2C LCB2a3;Oryzabase Gene Name Synonym(s)=serine palmitoyltransferase subunit LCBa3%2C serine palmitoyltransferase LCBa3 subunit;Note=Similar to Serine palmitoyltransferase (Fragment).;Transcript_evidence=AK069007 (DDBJ%2C Best hit);ORF_evidence=B6U7H4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity (GO:0016740),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferase%2C class-II%2C pyridoxal-phosphate binding site (IPR001917),Aminotransferase%2C class I/classII (IPR004839),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J023001A14;Oryzabase=21529;Expression=AK069007;TENOR=Os11t0516000-01;KEGG=Os11t0516000-01 (EC:2.3.1.50)
Chr11	irgsp1_rep	five_prime_UTR	18503539	18503853	.	+	.	Parent=Os11t0516000-01
Chr11	irgsp1_rep	CDS	18503854	18503979	.	+	0	Parent=Os11t0516000-01
Chr11	irgsp1_rep	CDS	18504082	18504147	.	+	0	Parent=Os11t0516000-01
Chr11	irgsp1_rep	CDS	18504961	18505049	.	+	0	Parent=Os11t0516000-01
Chr11	irgsp1_rep	CDS	18505446	18505591	.	+	1	Parent=Os11t0516000-01
Chr11	irgsp1_rep	CDS	18505676	18505800	.	+	2	Parent=Os11t0516000-01
Chr11	irgsp1_rep	CDS	18505897	18505990	.	+	0	Parent=Os11t0516000-01
Chr11	irgsp1_rep	CDS	18506077	18506240	.	+	2	Parent=Os11t0516000-01
Chr11	irgsp1_rep	CDS	18506382	18506543	.	+	0	Parent=Os11t0516000-01
Chr11	irgsp1_rep	CDS	18506616	18506742	.	+	0	Parent=Os11t0516000-01
Chr11	irgsp1_rep	CDS	18506845	18507011	.	+	2	Parent=Os11t0516000-01
Chr11	irgsp1_rep	CDS	18507133	18507240	.	+	0	Parent=Os11t0516000-01
Chr11	irgsp1_rep	CDS	18507331	18507423	.	+	0	Parent=Os11t0516000-01
Chr11	irgsp1_rep	three_prime_UTR	18507424	18507701	.	+	.	Parent=Os11t0516000-01
Chr11	irgsp1_rep	mRNA	18506918	18507468	.	-	.	ID=Os11t0516050-00;Name=Os11t0516050-00;Locus_id=Os11g0516050;Note=Non-protein coding transcript.;Transcript_evidence=EU973618 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0516050-00
Chr11	irgsp1_rep	exon	18507303	18507468	.	-	.	Parent=Os11t0516050-00
Chr11	irgsp1_rep	exon	18506918	18507234	.	-	.	Parent=Os11t0516050-00
Chr11	irgsp1_rep	mRNA	18509086	18512628	.	+	.	ID=Os11t0516100-01;Name=Os11t0516100-01;Locus_id=Os11g0516100;Note=Ribosomal protein L31 domain containing protein.;Transcript_evidence=AK072109 (DDBJ%2C Best hit),AK065391 (DDBJ%2C Best hit);ORF_evidence=Q2R3K2 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L31 (IPR002150);NIAS_FLcDNA=J013117J09,J013021P22;TENOR=Os11t0516100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	18509086	18512052	.	+	.	Parent=Os11t0516100-01
Chr11	irgsp1_rep	CDS	18512053	18512268	.	+	0	Parent=Os11t0516100-01
Chr11	irgsp1_rep	three_prime_UTR	18512269	18512628	.	+	.	Parent=Os11t0516100-01
Chr11	irgsp1_rep	mRNA	18520372	18521065	.	+	.	ID=Os11t0516400-01;Name=Os11t0516400-01;Locus_id=Os11g0516400;Note=Hypothetical conserved gene.;Transcript_evidence=AK062966 (DDBJ%2C Best hit);ORF_evidence=Q2R3K1 (UniProt);NIAS_FLcDNA=001-109-D11;Expression=AK062966;TENOR=Os11t0516400-01;KEGG=Os11t0516400-01
Chr11	irgsp1_rep	CDS	18520372	18520431	.	+	0	Parent=Os11t0516400-01
Chr11	irgsp1_rep	CDS	18520544	18520670	.	+	0	Parent=Os11t0516400-01
Chr11	irgsp1_rep	CDS	18520814	18520869	.	+	2	Parent=Os11t0516400-01
Chr11	irgsp1_rep	three_prime_UTR	18520870	18521065	.	+	.	Parent=Os11t0516400-01
Chr11	irgsp1_rep	mRNA	18531653	18541501	.	-	.	ID=Os11t0516800-01;Name=Os11t0516800-01;Locus_id=Os11g0516800;Note=Hypothetical protein.;Transcript_evidence=AK069747 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J023027A12;TENOR=Os11t0516800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	18541144	18541501	.	-	.	Parent=Os11t0516800-01
Chr11	irgsp1_rep	five_prime_UTR	18539728	18539927	.	-	.	Parent=Os11t0516800-01
Chr11	irgsp1_rep	five_prime_UTR	18539299	18539507	.	-	.	Parent=Os11t0516800-01
Chr11	irgsp1_rep	CDS	18539072	18539298	.	-	0	Parent=Os11t0516800-01
Chr11	irgsp1_rep	CDS	18538649	18538962	.	-	1	Parent=Os11t0516800-01
Chr11	irgsp1_rep	CDS	18538541	18538548	.	-	2	Parent=Os11t0516800-01
Chr11	irgsp1_rep	three_prime_UTR	18538411	18538540	.	-	.	Parent=Os11t0516800-01
Chr11	irgsp1_rep	three_prime_UTR	18538212	18538292	.	-	.	Parent=Os11t0516800-01
Chr11	irgsp1_rep	three_prime_UTR	18537932	18538048	.	-	.	Parent=Os11t0516800-01
Chr11	irgsp1_rep	three_prime_UTR	18537738	18537827	.	-	.	Parent=Os11t0516800-01
Chr11	irgsp1_rep	three_prime_UTR	18537573	18537668	.	-	.	Parent=Os11t0516800-01
Chr11	irgsp1_rep	three_prime_UTR	18537437	18537496	.	-	.	Parent=Os11t0516800-01
Chr11	irgsp1_rep	three_prime_UTR	18537282	18537350	.	-	.	Parent=Os11t0516800-01
Chr11	irgsp1_rep	three_prime_UTR	18537095	18537182	.	-	.	Parent=Os11t0516800-01
Chr11	irgsp1_rep	three_prime_UTR	18536717	18536818	.	-	.	Parent=Os11t0516800-01
Chr11	irgsp1_rep	three_prime_UTR	18536548	18536637	.	-	.	Parent=Os11t0516800-01
Chr11	irgsp1_rep	three_prime_UTR	18536388	18536468	.	-	.	Parent=Os11t0516800-01
Chr11	irgsp1_rep	three_prime_UTR	18533271	18533351	.	-	.	Parent=Os11t0516800-01
Chr11	irgsp1_rep	three_prime_UTR	18533105	18533200	.	-	.	Parent=Os11t0516800-01
Chr11	irgsp1_rep	three_prime_UTR	18532967	18533023	.	-	.	Parent=Os11t0516800-01
Chr11	irgsp1_rep	three_prime_UTR	18532834	18532878	.	-	.	Parent=Os11t0516800-01
Chr11	irgsp1_rep	three_prime_UTR	18532153	18532201	.	-	.	Parent=Os11t0516800-01
Chr11	irgsp1_rep	three_prime_UTR	18531653	18532010	.	-	.	Parent=Os11t0516800-01
Chr11	irgsp1_rep	mRNA	18544614	18548898	.	-	.	ID=Os11t0517200-00;Name=Os11t0517200-00;Locus_id=Os11g0517200;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R3J8 (UniProt);TENOR=Os11t0517200-00;KEGG=Os11t0517200-00
Chr11	irgsp1_rep	CDS	18548817	18548898	.	-	0	Parent=Os11t0517200-00
Chr11	irgsp1_rep	CDS	18548510	18548562	.	-	2	Parent=Os11t0517200-00
Chr11	irgsp1_rep	CDS	18547653	18548026	.	-	0	Parent=Os11t0517200-00
Chr11	irgsp1_rep	CDS	18547439	18547569	.	-	1	Parent=Os11t0517200-00
Chr11	irgsp1_rep	CDS	18546695	18546830	.	-	2	Parent=Os11t0517200-00
Chr11	irgsp1_rep	CDS	18545358	18545667	.	-	1	Parent=Os11t0517200-00
Chr11	irgsp1_rep	CDS	18544614	18544676	.	-	0	Parent=Os11t0517200-00
Chr11	irgsp1_rep	mRNA	18550900	18551191	.	-	.	ID=Os11t0517350-00;Name=Os11t0517350-00;Locus_id=Os11g0517350;Note=Similar to Maturase K (Fragment).;Transcript_evidence=AF348493 (DDBJ);ORF_evidence=Q9MV41 (UniProt);TENOR=Os11t0517350-00;KEGG=Os11t0517350-00
Chr11	irgsp1_rep	five_prime_UTR	18551134	18551191	.	-	.	Parent=Os11t0517350-00
Chr11	irgsp1_rep	CDS	18550900	18551133	.	-	0	Parent=Os11t0517350-00
Chr11	irgsp1_rep	mRNA	18552567	18556300	.	-	.	ID=Os11t0517400-01;Name=Os11t0517400-01;Locus_id=Os11g0517400;Note=Conserved hypothetical protein.;Transcript_evidence=AK100272 (DDBJ%2C Best hit);ORF_evidence=B9GAX4 (UniProt);NIAS_FLcDNA=J023072A06;TENOR=Os11t0517400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	18555544	18556300	.	-	.	Parent=Os11t0517400-01
Chr11	irgsp1_rep	CDS	18555413	18555543	.	-	0	Parent=Os11t0517400-01
Chr11	irgsp1_rep	CDS	18555173	18555305	.	-	1	Parent=Os11t0517400-01
Chr11	irgsp1_rep	three_prime_UTR	18555080	18555172	.	-	.	Parent=Os11t0517400-01
Chr11	irgsp1_rep	three_prime_UTR	18554754	18554905	.	-	.	Parent=Os11t0517400-01
Chr11	irgsp1_rep	three_prime_UTR	18554565	18554622	.	-	.	Parent=Os11t0517400-01
Chr11	irgsp1_rep	three_prime_UTR	18554379	18554458	.	-	.	Parent=Os11t0517400-01
Chr11	irgsp1_rep	three_prime_UTR	18552567	18552834	.	-	.	Parent=Os11t0517400-01
Chr11	irgsp1_rep	mRNA	18560178	18575490	.	-	.	ID=Os11t0517800-00;Name=Os11t0517800-00;Locus_id=Os11g0517800;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9GAX4 (UniProt);TENOR=Os11t0517800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	18575437	18575490	.	-	0	Parent=Os11t0517800-00
Chr11	irgsp1_rep	CDS	18569633	18569737	.	-	0	Parent=Os11t0517800-00
Chr11	irgsp1_rep	CDS	18568928	18569068	.	-	0	Parent=Os11t0517800-00
Chr11	irgsp1_rep	CDS	18568739	18568819	.	-	0	Parent=Os11t0517800-00
Chr11	irgsp1_rep	CDS	18568170	18568333	.	-	0	Parent=Os11t0517800-00
Chr11	irgsp1_rep	CDS	18567493	18567787	.	-	1	Parent=Os11t0517800-00
Chr11	irgsp1_rep	CDS	18566952	18567059	.	-	0	Parent=Os11t0517800-00
Chr11	irgsp1_rep	CDS	18566652	18566761	.	-	0	Parent=Os11t0517800-00
Chr11	irgsp1_rep	CDS	18566306	18566408	.	-	1	Parent=Os11t0517800-00
Chr11	irgsp1_rep	CDS	18565979	18566130	.	-	0	Parent=Os11t0517800-00
Chr11	irgsp1_rep	CDS	18563739	18563850	.	-	1	Parent=Os11t0517800-00
Chr11	irgsp1_rep	CDS	18562973	18563122	.	-	0	Parent=Os11t0517800-00
Chr11	irgsp1_rep	CDS	18561015	18561131	.	-	0	Parent=Os11t0517800-00
Chr11	irgsp1_rep	CDS	18560677	18560775	.	-	0	Parent=Os11t0517800-00
Chr11	irgsp1_rep	CDS	18560537	18560593	.	-	0	Parent=Os11t0517800-00
Chr11	irgsp1_rep	CDS	18560394	18560462	.	-	0	Parent=Os11t0517800-00
Chr11	irgsp1_rep	CDS	18560241	18560327	.	-	0	Parent=Os11t0517800-00
Chr11	irgsp1_rep	CDS	18560178	18560207	.	-	0	Parent=Os11t0517800-00
Chr11	irgsp1_rep	mRNA	18581847	18585958	.	-	.	ID=Os11t0518300-01;Name=Os11t0518300-01;Locus_id=Os11g0518300;Note=Hypothetical protein.;Transcript_evidence=AK064313 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-107-C07;Expression=AK064313;TENOR=Os11t0518300-01;KEGG=Os11t0518300-01
Chr11	irgsp1_rep	five_prime_UTR	18585311	18585958	.	-	.	Parent=Os11t0518300-01
Chr11	irgsp1_rep	five_prime_UTR	18585079	18585223	.	-	.	Parent=Os11t0518300-01
Chr11	irgsp1_rep	five_prime_UTR	18583681	18583754	.	-	.	Parent=Os11t0518300-01
Chr11	irgsp1_rep	CDS	18583674	18583680	.	-	0	Parent=Os11t0518300-01
Chr11	irgsp1_rep	CDS	18583461	18583495	.	-	2	Parent=Os11t0518300-01
Chr11	irgsp1_rep	CDS	18582079	18582312	.	-	0	Parent=Os11t0518300-01
Chr11	irgsp1_rep	three_prime_UTR	18581847	18582078	.	-	.	Parent=Os11t0518300-01
Chr11	irgsp1_rep	mRNA	18608152	18611496	.	+	.	ID=Os11t0518600-01;Name=Os11t0518600-01;Locus_id=Os11g0518600;Note=Conserved hypothetical protein.;Transcript_evidence=AK106461 (DDBJ%2C Best hit);ORF_evidence=B8BKR8 (UniProt);NIAS_FLcDNA=002-103-G06;Expression=AK106461;TENOR=Os11t0518600-01;KEGG=Os11t0518600-01
Chr11	irgsp1_rep	five_prime_UTR	18608152	18608255	.	+	.	Parent=Os11t0518600-01
Chr11	irgsp1_rep	five_prime_UTR	18608640	18608922	.	+	.	Parent=Os11t0518600-01
Chr11	irgsp1_rep	five_prime_UTR	18609100	18609180	.	+	.	Parent=Os11t0518600-01
Chr11	irgsp1_rep	five_prime_UTR	18610165	18610185	.	+	.	Parent=Os11t0518600-01
Chr11	irgsp1_rep	CDS	18610186	18610230	.	+	0	Parent=Os11t0518600-01
Chr11	irgsp1_rep	CDS	18610384	18610742	.	+	0	Parent=Os11t0518600-01
Chr11	irgsp1_rep	CDS	18610819	18610958	.	+	1	Parent=Os11t0518600-01
Chr11	irgsp1_rep	CDS	18611191	18611345	.	+	2	Parent=Os11t0518600-01
Chr11	irgsp1_rep	three_prime_UTR	18611346	18611496	.	+	.	Parent=Os11t0518600-01
Chr11	irgsp1_rep	mRNA	18622623	18622684	.	+	.	ID=Os11t0518801-00;Name=Os11t0518801-00;Locus_id=Os11g0518801;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0518801-00
Chr11	irgsp1_rep	exon	18622623	18622684	.	+	.	Parent=Os11t0518801-00
Chr11	irgsp1_rep	mRNA	18636476	18650782	.	+	.	ID=Os11t0518900-01;Name=Os11t0518900-01;Locus_id=Os11g0518900;Note=Conserved hypothetical protein.;Transcript_evidence=AK063772 (DDBJ%2C Best hit),AK121776 (DDBJ%2C Best hit);ORF_evidence=B9GAX7 (UniProt);NIAS_FLcDNA=001-121-C02,J033093D19;TENOR=Os11t0518900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	18636476	18636575	.	+	0	Parent=Os11t0518900-01
Chr11	irgsp1_rep	CDS	18637073	18637164	.	+	2	Parent=Os11t0518900-01
Chr11	irgsp1_rep	CDS	18637273	18637389	.	+	0	Parent=Os11t0518900-01
Chr11	irgsp1_rep	CDS	18638165	18638250	.	+	0	Parent=Os11t0518900-01
Chr11	irgsp1_rep	CDS	18638322	18638580	.	+	1	Parent=Os11t0518900-01
Chr11	irgsp1_rep	CDS	18638698	18638894	.	+	0	Parent=Os11t0518900-01
Chr11	irgsp1_rep	CDS	18640308	18640799	.	+	1	Parent=Os11t0518900-01
Chr11	irgsp1_rep	CDS	18640909	18641236	.	+	1	Parent=Os11t0518900-01
Chr11	irgsp1_rep	CDS	18642415	18642555	.	+	0	Parent=Os11t0518900-01
Chr11	irgsp1_rep	CDS	18642663	18642740	.	+	0	Parent=Os11t0518900-01
Chr11	irgsp1_rep	CDS	18643812	18643928	.	+	0	Parent=Os11t0518900-01
Chr11	irgsp1_rep	CDS	18644014	18644103	.	+	0	Parent=Os11t0518900-01
Chr11	irgsp1_rep	CDS	18644197	18644289	.	+	0	Parent=Os11t0518900-01
Chr11	irgsp1_rep	CDS	18644367	18644426	.	+	0	Parent=Os11t0518900-01
Chr11	irgsp1_rep	CDS	18644504	18644572	.	+	0	Parent=Os11t0518900-01
Chr11	irgsp1_rep	CDS	18644674	18644760	.	+	0	Parent=Os11t0518900-01
Chr11	irgsp1_rep	CDS	18647283	18647384	.	+	0	Parent=Os11t0518900-01
Chr11	irgsp1_rep	CDS	18647846	18647935	.	+	0	Parent=Os11t0518900-01
Chr11	irgsp1_rep	CDS	18648012	18648092	.	+	0	Parent=Os11t0518900-01
Chr11	irgsp1_rep	CDS	18649148	18649228	.	+	0	Parent=Os11t0518900-01
Chr11	irgsp1_rep	CDS	18649306	18649401	.	+	0	Parent=Os11t0518900-01
Chr11	irgsp1_rep	CDS	18649480	18649536	.	+	0	Parent=Os11t0518900-01
Chr11	irgsp1_rep	CDS	18649630	18649674	.	+	0	Parent=Os11t0518900-01
Chr11	irgsp1_rep	CDS	18649744	18649809	.	+	0	Parent=Os11t0518900-01
Chr11	irgsp1_rep	CDS	18650547	18650582	.	+	0	Parent=Os11t0518900-01
Chr11	irgsp1_rep	three_prime_UTR	18650583	18650782	.	+	.	Parent=Os11t0518900-01
Chr11	irgsp1_rep	mRNA	18636501	18644868	.	+	.	ID=Os11t0518900-02;Name=Os11t0518900-02;Locus_id=Os11g0518900;Note=Hypothetical conserved gene.;Transcript_evidence=AK102677 (DDBJ%2C Best hit);ORF_evidence=B9GAX7 (UniProt);NIAS_FLcDNA=J033102H09;Expression=AK102677;TENOR=Os11t0518900-02;KEGG=Os11t0518900-02
Chr11	irgsp1_rep	five_prime_UTR	18636501	18636502	.	+	.	Parent=Os11t0518900-02
Chr11	irgsp1_rep	CDS	18636503	18636575	.	+	0	Parent=Os11t0518900-02
Chr11	irgsp1_rep	CDS	18637073	18637164	.	+	2	Parent=Os11t0518900-02
Chr11	irgsp1_rep	CDS	18637273	18637389	.	+	0	Parent=Os11t0518900-02
Chr11	irgsp1_rep	CDS	18638165	18638250	.	+	0	Parent=Os11t0518900-02
Chr11	irgsp1_rep	CDS	18638322	18638580	.	+	1	Parent=Os11t0518900-02
Chr11	irgsp1_rep	CDS	18638698	18638894	.	+	0	Parent=Os11t0518900-02
Chr11	irgsp1_rep	CDS	18640308	18640799	.	+	1	Parent=Os11t0518900-02
Chr11	irgsp1_rep	CDS	18640909	18641236	.	+	1	Parent=Os11t0518900-02
Chr11	irgsp1_rep	CDS	18642415	18642555	.	+	0	Parent=Os11t0518900-02
Chr11	irgsp1_rep	CDS	18642663	18642740	.	+	0	Parent=Os11t0518900-02
Chr11	irgsp1_rep	CDS	18643812	18643928	.	+	0	Parent=Os11t0518900-02
Chr11	irgsp1_rep	CDS	18644014	18644103	.	+	0	Parent=Os11t0518900-02
Chr11	irgsp1_rep	CDS	18644197	18644289	.	+	0	Parent=Os11t0518900-02
Chr11	irgsp1_rep	CDS	18644367	18644426	.	+	0	Parent=Os11t0518900-02
Chr11	irgsp1_rep	CDS	18644504	18644572	.	+	0	Parent=Os11t0518900-02
Chr11	irgsp1_rep	CDS	18644674	18644775	.	+	0	Parent=Os11t0518900-02
Chr11	irgsp1_rep	three_prime_UTR	18644776	18644868	.	+	.	Parent=Os11t0518900-02
Chr11	irgsp1_rep	mRNA	18655353	18658368	.	+	.	ID=Os11t0519100-00;Name=Os11t0519100-00;Locus_id=Os11g0519100;Note=Similar to OSIGBa0132O24.2 protein.;Transcript_evidence=BT061319 (DDBJ);ORF_evidence=Q01MB5 (UniProt);InterPro=Transposase%2C Ptta/En/Spm%2C plant (IPR004252);TENOR=Os11t0519100-00;KEGG=Os11t0519100-00
Chr11	irgsp1_rep	five_prime_UTR	18655353	18655431	.	+	.	Parent=Os11t0519100-00
Chr11	irgsp1_rep	five_prime_UTR	18655545	18655755	.	+	.	Parent=Os11t0519100-00
Chr11	irgsp1_rep	CDS	18655756	18655786	.	+	0	Parent=Os11t0519100-00
Chr11	irgsp1_rep	CDS	18656098	18656194	.	+	2	Parent=Os11t0519100-00
Chr11	irgsp1_rep	CDS	18656310	18656598	.	+	1	Parent=Os11t0519100-00
Chr11	irgsp1_rep	CDS	18656720	18656932	.	+	0	Parent=Os11t0519100-00
Chr11	irgsp1_rep	CDS	18657018	18657110	.	+	0	Parent=Os11t0519100-00
Chr11	irgsp1_rep	CDS	18657554	18657658	.	+	0	Parent=Os11t0519100-00
Chr11	irgsp1_rep	CDS	18657743	18658087	.	+	0	Parent=Os11t0519100-00
Chr11	irgsp1_rep	three_prime_UTR	18658088	18658368	.	+	.	Parent=Os11t0519100-00
Chr11	irgsp1_rep	mRNA	18690522	18702124	.	-	.	ID=Os11t0519500-00;Name=Os11t0519500-00;Locus_id=Os11g0519500;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9GAX9 (UniProt);TENOR=Os11t0519500-00
Chr11	irgsp1_rep	CDS	18702020	18702124	.	-	0	Parent=Os11t0519500-00
Chr11	irgsp1_rep	CDS	18701692	18701802	.	-	0	Parent=Os11t0519500-00
Chr11	irgsp1_rep	CDS	18701443	18701568	.	-	0	Parent=Os11t0519500-00
Chr11	irgsp1_rep	CDS	18700163	18700340	.	-	0	Parent=Os11t0519500-00
Chr11	irgsp1_rep	CDS	18699960	18700033	.	-	2	Parent=Os11t0519500-00
Chr11	irgsp1_rep	CDS	18699537	18699682	.	-	0	Parent=Os11t0519500-00
Chr11	irgsp1_rep	CDS	18698660	18698755	.	-	1	Parent=Os11t0519500-00
Chr11	irgsp1_rep	CDS	18698062	18698503	.	-	1	Parent=Os11t0519500-00
Chr11	irgsp1_rep	CDS	18697796	18697933	.	-	0	Parent=Os11t0519500-00
Chr11	irgsp1_rep	CDS	18697633	18697713	.	-	0	Parent=Os11t0519500-00
Chr11	irgsp1_rep	CDS	18696976	18697092	.	-	0	Parent=Os11t0519500-00
Chr11	irgsp1_rep	CDS	18696636	18696729	.	-	0	Parent=Os11t0519500-00
Chr11	irgsp1_rep	CDS	18696462	18696523	.	-	2	Parent=Os11t0519500-00
Chr11	irgsp1_rep	CDS	18696244	18696312	.	-	0	Parent=Os11t0519500-00
Chr11	irgsp1_rep	CDS	18696085	18696171	.	-	0	Parent=Os11t0519500-00
Chr11	irgsp1_rep	CDS	18693899	18693997	.	-	0	Parent=Os11t0519500-00
Chr11	irgsp1_rep	CDS	18693721	18693807	.	-	0	Parent=Os11t0519500-00
Chr11	irgsp1_rep	CDS	18693557	18693637	.	-	0	Parent=Os11t0519500-00
Chr11	irgsp1_rep	CDS	18692084	18692164	.	-	0	Parent=Os11t0519500-00
Chr11	irgsp1_rep	CDS	18691910	18692005	.	-	0	Parent=Os11t0519500-00
Chr11	irgsp1_rep	CDS	18691619	18691663	.	-	0	Parent=Os11t0519500-00
Chr11	irgsp1_rep	CDS	18691451	18691516	.	-	0	Parent=Os11t0519500-00
Chr11	irgsp1_rep	CDS	18690522	18690734	.	-	0	Parent=Os11t0519500-00
Chr11	irgsp1_rep	mRNA	18780521	18788731	.	+	.	ID=Os11t0520500-00;Name=Os11t0520500-00;Locus_id=Os11g0520500;Note=Conserved hypothetical protein.;Transcript_evidence=AK363975 (DDBJ);ORF_evidence=Q2R3H0 (UniProt);TENOR=Os11t0520500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	18780521	18780790	.	+	0	Parent=Os11t0520500-00
Chr11	irgsp1_rep	CDS	18781073	18781694	.	+	0	Parent=Os11t0520500-00
Chr11	irgsp1_rep	CDS	18782384	18782519	.	+	2	Parent=Os11t0520500-00
Chr11	irgsp1_rep	CDS	18783674	18783752	.	+	1	Parent=Os11t0520500-00
Chr11	irgsp1_rep	CDS	18783882	18783923	.	+	0	Parent=Os11t0520500-00
Chr11	irgsp1_rep	CDS	18784011	18784073	.	+	0	Parent=Os11t0520500-00
Chr11	irgsp1_rep	CDS	18784573	18784622	.	+	0	Parent=Os11t0520500-00
Chr11	irgsp1_rep	CDS	18784702	18784729	.	+	1	Parent=Os11t0520500-00
Chr11	irgsp1_rep	CDS	18784943	18785017	.	+	0	Parent=Os11t0520500-00
Chr11	irgsp1_rep	CDS	18785090	18785200	.	+	0	Parent=Os11t0520500-00
Chr11	irgsp1_rep	CDS	18785292	18785352	.	+	0	Parent=Os11t0520500-00
Chr11	irgsp1_rep	CDS	18785557	18785667	.	+	2	Parent=Os11t0520500-00
Chr11	irgsp1_rep	CDS	18785755	18785873	.	+	2	Parent=Os11t0520500-00
Chr11	irgsp1_rep	CDS	18786015	18786084	.	+	0	Parent=Os11t0520500-00
Chr11	irgsp1_rep	CDS	18786275	18786316	.	+	2	Parent=Os11t0520500-00
Chr11	irgsp1_rep	CDS	18786490	18786530	.	+	2	Parent=Os11t0520500-00
Chr11	irgsp1_rep	CDS	18787419	18787549	.	+	0	Parent=Os11t0520500-00
Chr11	irgsp1_rep	CDS	18788357	18788384	.	+	1	Parent=Os11t0520500-00
Chr11	irgsp1_rep	three_prime_UTR	18788385	18788731	.	+	.	Parent=Os11t0520500-00
Chr11	irgsp1_rep	mRNA	18774888	18788728	.	-	.	ID=Os11t0520950-01;Name=Os11t0520950-01;Locus_id=Os11g0520950;Note=Non-protein coding transcript.;Transcript_evidence=AK287697 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065130B13;TENOR=Os11t0520950-01
Chr11	irgsp1_rep	exon	18788286	18788728	.	-	.	Parent=Os11t0520950-01
Chr11	irgsp1_rep	exon	18787419	18787545	.	-	.	Parent=Os11t0520950-01
Chr11	irgsp1_rep	exon	18786490	18786530	.	-	.	Parent=Os11t0520950-01
Chr11	irgsp1_rep	exon	18786275	18786316	.	-	.	Parent=Os11t0520950-01
Chr11	irgsp1_rep	exon	18786015	18786084	.	-	.	Parent=Os11t0520950-01
Chr11	irgsp1_rep	exon	18785755	18785873	.	-	.	Parent=Os11t0520950-01
Chr11	irgsp1_rep	exon	18785557	18785673	.	-	.	Parent=Os11t0520950-01
Chr11	irgsp1_rep	exon	18785292	18785352	.	-	.	Parent=Os11t0520950-01
Chr11	irgsp1_rep	exon	18785090	18785200	.	-	.	Parent=Os11t0520950-01
Chr11	irgsp1_rep	exon	18784943	18785017	.	-	.	Parent=Os11t0520950-01
Chr11	irgsp1_rep	exon	18784702	18784729	.	-	.	Parent=Os11t0520950-01
Chr11	irgsp1_rep	exon	18784573	18784622	.	-	.	Parent=Os11t0520950-01
Chr11	irgsp1_rep	exon	18784011	18784073	.	-	.	Parent=Os11t0520950-01
Chr11	irgsp1_rep	exon	18783882	18783923	.	-	.	Parent=Os11t0520950-01
Chr11	irgsp1_rep	exon	18783674	18783752	.	-	.	Parent=Os11t0520950-01
Chr11	irgsp1_rep	exon	18782380	18782519	.	-	.	Parent=Os11t0520950-01
Chr11	irgsp1_rep	exon	18774888	18775388	.	-	.	Parent=Os11t0520950-01
Chr11	irgsp1_rep	mRNA	18770070	18772676	.	+	.	ID=Os11t0521000-01;Name=Os11t0521000-01;Locus_id=Os11g0521000;CGSNL Gene Symbol=GELP111;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 111;Oryzabase Gene Symbol Synonym(s)=OsGELP111;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 111;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK108542 (DDBJ%2C Best hit);ORF_evidence=NP_001152155.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087),Esterase%2C SGNH hydrolase-type%2C subgroup (IPR013831);NIAS_FLcDNA=002-144-D07;Oryzabase=11061;Expression=AK108542;TENOR=Os11t0521000-01;KEGG=Os11t0521000-01
Chr11	irgsp1_rep	five_prime_UTR	18770070	18770170	.	+	.	Parent=Os11t0521000-01
Chr11	irgsp1_rep	CDS	18770171	18770420	.	+	0	Parent=Os11t0521000-01
Chr11	irgsp1_rep	CDS	18770525	18770737	.	+	2	Parent=Os11t0521000-01
Chr11	irgsp1_rep	CDS	18771592	18771738	.	+	2	Parent=Os11t0521000-01
Chr11	irgsp1_rep	CDS	18771960	18772235	.	+	2	Parent=Os11t0521000-01
Chr11	irgsp1_rep	CDS	18772353	18772588	.	+	2	Parent=Os11t0521000-01
Chr11	irgsp1_rep	three_prime_UTR	18772589	18772676	.	+	.	Parent=Os11t0521000-01
Chr11	irgsp1_rep	mRNA	18751189	18753276	.	-	.	ID=Os11t0521500-01;Name=Os11t0521500-01;Locus_id=Os11g0521500;Note=Similar to Acyl carrier protein%2C chloroplast precursor (ACP) (ACP05) (Clone 29C08).;Transcript_evidence=AK120212 (DDBJ%2C Best hit);ORF_evidence=A2ZES1 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Molecular Function: acyl carrier activity (GO:0000036),Molecular Function: phosphopantetheine binding (GO:0031177),Molecular Function: cofactor binding (GO:0048037);InterPro=Acyl carrier protein (ACP) (IPR003231),Phosphopantetheine attachment site (IPR006162),Phosphopantetheine-binding (IPR006163),Acyl carrier protein-like (IPR009081);NIAS_FLcDNA=J013039D22;Expression=AK120212;TENOR=Os11t0521500-01;KEGG=Os11t0521500-01
Chr11	irgsp1_rep	five_prime_UTR	18753207	18753276	.	-	.	Parent=Os11t0521500-01
Chr11	irgsp1_rep	CDS	18753132	18753206	.	-	0	Parent=Os11t0521500-01
Chr11	irgsp1_rep	CDS	18752164	18752265	.	-	0	Parent=Os11t0521500-01
Chr11	irgsp1_rep	CDS	18751537	18751806	.	-	0	Parent=Os11t0521500-01
Chr11	irgsp1_rep	three_prime_UTR	18751189	18751536	.	-	.	Parent=Os11t0521500-01
Chr11	irgsp1_rep	mRNA	18743614	18747164	.	-	.	ID=Os11t0521900-01;Name=Os11t0521900-01;Locus_id=Os11g0521900;Note=Similar to NLI interacting factor-like phosphatase family protein%2C expressed.;Transcript_evidence=AK101343 (DDBJ%2C Best hit);ORF_evidence=Q2R3H8 (UniProt);NIAS_FLcDNA=J033034K06;TENOR=Os11t0521900-01
Chr11	irgsp1_rep	five_prime_UTR	18746888	18747164	.	-	.	Parent=Os11t0521900-01
Chr11	irgsp1_rep	CDS	18746220	18746887	.	-	0	Parent=Os11t0521900-01
Chr11	irgsp1_rep	CDS	18745982	18746120	.	-	1	Parent=Os11t0521900-01
Chr11	irgsp1_rep	CDS	18745858	18745913	.	-	0	Parent=Os11t0521900-01
Chr11	irgsp1_rep	CDS	18745702	18745762	.	-	1	Parent=Os11t0521900-01
Chr11	irgsp1_rep	CDS	18744218	18745606	.	-	0	Parent=Os11t0521900-01
Chr11	irgsp1_rep	CDS	18743614	18743689	.	-	0	Parent=Os11t0521900-01
Chr11	irgsp1_rep	mRNA	18741147	18746751	.	-	.	ID=Os11t0521900-02;Name=Os11t0521900-02;Locus_id=Os11g0521900;Note=Similar to NLI interacting factor-like phosphatase family protein%2C expressed.;Transcript_evidence=AK066746 (DDBJ%2C Best hit);ORF_evidence=Q2R3H8 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Cellular Component: nucleus (GO:0005634),Molecular Function: phosphoprotein phosphatase activity (GO:0004721),Molecular Function: protein binding (GO:0005515);InterPro=BRCT (IPR001357),NLI interacting factor (IPR004274),FCP1-like phosphatase%2C phosphatase domain (IPR011947),HAD-like domain (IPR023214);NIAS_FLcDNA=J013083G19;TENOR=Os11t0521900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	18746750	18746751	.	-	.	Parent=Os11t0521900-02
Chr11	irgsp1_rep	CDS	18746220	18746749	.	-	0	Parent=Os11t0521900-02
Chr11	irgsp1_rep	CDS	18745982	18746120	.	-	1	Parent=Os11t0521900-02
Chr11	irgsp1_rep	CDS	18745858	18745913	.	-	0	Parent=Os11t0521900-02
Chr11	irgsp1_rep	CDS	18745702	18745762	.	-	1	Parent=Os11t0521900-02
Chr11	irgsp1_rep	CDS	18744218	18745606	.	-	0	Parent=Os11t0521900-02
Chr11	irgsp1_rep	CDS	18743078	18743689	.	-	0	Parent=Os11t0521900-02
Chr11	irgsp1_rep	CDS	18742861	18743007	.	-	0	Parent=Os11t0521900-02
Chr11	irgsp1_rep	CDS	18742504	18742772	.	-	0	Parent=Os11t0521900-02
Chr11	irgsp1_rep	CDS	18742301	18742412	.	-	1	Parent=Os11t0521900-02
Chr11	irgsp1_rep	CDS	18741909	18742213	.	-	0	Parent=Os11t0521900-02
Chr11	irgsp1_rep	CDS	18741767	18741827	.	-	1	Parent=Os11t0521900-02
Chr11	irgsp1_rep	three_prime_UTR	18741147	18741766	.	-	.	Parent=Os11t0521900-02
Chr11	irgsp1_rep	mRNA	18740790	18744753	.	-	.	ID=Os11t0521900-03;Name=Os11t0521900-03;Locus_id=Os11g0521900;Note=Similar to NLI interacting factor-like phosphatase family protein%2C expressed.;Transcript_evidence=AK100943 (DDBJ%2C Best hit);ORF_evidence=Q2R3H8 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Cellular Component: nucleus (GO:0005634),Molecular Function: phosphoprotein phosphatase activity (GO:0004721),Molecular Function: protein binding (GO:0005515);InterPro=BRCT (IPR001357),NLI interacting factor (IPR004274),FCP1-like phosphatase%2C phosphatase domain (IPR011947),HAD-like domain (IPR023214);NIAS_FLcDNA=J023138E17;TENOR=Os11t0521900-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	18744752	18744753	.	-	.	Parent=Os11t0521900-03
Chr11	irgsp1_rep	CDS	18744218	18744751	.	-	0	Parent=Os11t0521900-03
Chr11	irgsp1_rep	CDS	18743078	18743689	.	-	0	Parent=Os11t0521900-03
Chr11	irgsp1_rep	CDS	18742861	18743007	.	-	0	Parent=Os11t0521900-03
Chr11	irgsp1_rep	CDS	18742504	18742772	.	-	0	Parent=Os11t0521900-03
Chr11	irgsp1_rep	CDS	18742301	18742412	.	-	1	Parent=Os11t0521900-03
Chr11	irgsp1_rep	CDS	18741909	18742213	.	-	0	Parent=Os11t0521900-03
Chr11	irgsp1_rep	CDS	18741767	18741827	.	-	1	Parent=Os11t0521900-03
Chr11	irgsp1_rep	three_prime_UTR	18740790	18741766	.	-	.	Parent=Os11t0521900-03
Chr11	irgsp1_rep	mRNA	18728970	18733435	.	+	.	ID=Os11t0522000-01;Name=Os11t0522000-01;Locus_id=Os11g0522000;Note=XY4 protein (Fragment).;Transcript_evidence=AK243217 (DDBJ%2C Best hit);ORF_evidence=NP_001148232.1 (RefSeq);InterPro=Histidine phosphatase superfamily%2C clade-1 (IPR013078),Uncharacterised conserved protein UCP036920%2C phosphoglycerate mutase%2C plant X4/Y4 (IPR017070);NIAS_FLcDNA=J100043H06;TENOR=Os11t0522000-01;KEGG=Os11t0522000-01
Chr11	irgsp1_rep	five_prime_UTR	18728970	18729051	.	+	.	Parent=Os11t0522000-01
Chr11	irgsp1_rep	CDS	18729052	18729615	.	+	0	Parent=Os11t0522000-01
Chr11	irgsp1_rep	CDS	18732464	18733138	.	+	0	Parent=Os11t0522000-01
Chr11	irgsp1_rep	three_prime_UTR	18733139	18733435	.	+	.	Parent=Os11t0522000-01
Chr11	irgsp1_rep	mRNA	18831750	18835479	.	+	.	ID=Os11t0522900-01;Name=Os11t0522900-01;Locus_id=Os11g0522900;CGSNL Gene Symbol=SCP63;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 63;Oryzabase Gene Symbol Synonym(s)=OsSCP63;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 63;Note=Peptidase S10%2C serine carboxypeptidase family protein.;Transcript_evidence=AK059293 (DDBJ%2C Best hit);ORF_evidence=B6U0V5 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=001-025-E07;Oryzabase=19236;TENOR=Os11t0522900-01;KEGG=Os11t0522900-01 (EC:3.4.16.5)
Chr11	irgsp1_rep	five_prime_UTR	18831750	18831989	.	+	.	Parent=Os11t0522900-01
Chr11	irgsp1_rep	CDS	18831990	18832263	.	+	0	Parent=Os11t0522900-01
Chr11	irgsp1_rep	CDS	18832635	18832736	.	+	2	Parent=Os11t0522900-01
Chr11	irgsp1_rep	CDS	18832879	18832974	.	+	2	Parent=Os11t0522900-01
Chr11	irgsp1_rep	CDS	18833276	18833365	.	+	2	Parent=Os11t0522900-01
Chr11	irgsp1_rep	CDS	18833484	18833566	.	+	2	Parent=Os11t0522900-01
Chr11	irgsp1_rep	CDS	18833656	18833937	.	+	0	Parent=Os11t0522900-01
Chr11	irgsp1_rep	CDS	18834041	18834168	.	+	0	Parent=Os11t0522900-01
Chr11	irgsp1_rep	CDS	18834272	18834364	.	+	1	Parent=Os11t0522900-01
Chr11	irgsp1_rep	CDS	18834854	18834971	.	+	1	Parent=Os11t0522900-01
Chr11	irgsp1_rep	CDS	18835060	18835212	.	+	0	Parent=Os11t0522900-01
Chr11	irgsp1_rep	three_prime_UTR	18835213	18835479	.	+	.	Parent=Os11t0522900-01
Chr11	irgsp1_rep	mRNA	18874063	18876987	.	+	.	ID=Os11t0523110-01;Name=Os11t0523110-01;Locus_id=Os11g0523110;Note=Similar to Alcohol dehydrogenase-like protein.;Transcript_evidence=AK110972 (DDBJ%2C Best hit);ORF_evidence=XP_002875338.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=002-174-B12;TENOR=Os11t0523110-01;KEGG=Os11t0523110-01 (EC:1.1.1.178%2C EC:1.1.1.35)
Chr11	irgsp1_rep	five_prime_UTR	18874063	18874225	.	+	.	Parent=Os11t0523110-01
Chr11	irgsp1_rep	CDS	18874226	18874260	.	+	0	Parent=Os11t0523110-01
Chr11	irgsp1_rep	CDS	18874554	18874628	.	+	1	Parent=Os11t0523110-01
Chr11	irgsp1_rep	CDS	18875980	18876784	.	+	1	Parent=Os11t0523110-01
Chr11	irgsp1_rep	three_prime_UTR	18876785	18876987	.	+	.	Parent=Os11t0523110-01
Chr11	irgsp1_rep	mRNA	18903778	18904547	.	-	.	ID=Os11t0523500-00;Name=Os11t0523500-00;Locus_id=Os11g0523500;Note=Terpenoid cylases/protein prenyltransferase alpha-alpha toroid domain containing protein.;Transcript_evidence=AK368818 (DDBJ);ORF_evidence=Q2R3F7 (UniProt);InterPro=Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930);TENOR=Os11t0523500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	18904356	18904547	.	-	0	Parent=Os11t0523500-00
Chr11	irgsp1_rep	CDS	18904116	18904265	.	-	0	Parent=Os11t0523500-00
Chr11	irgsp1_rep	CDS	18903855	18903992	.	-	0	Parent=Os11t0523500-00
Chr11	irgsp1_rep	three_prime_UTR	18903778	18903854	.	-	.	Parent=Os11t0523500-00
Chr11	irgsp1_rep	mRNA	18922046	18925254	.	+	.	ID=Os11t0523700-01;Name=Os11t0523700-01;Locus_id=Os11g0523700;RAP-DB Gene Symbol Synonym(s)=OsbHLH002%2C OsICE1%2C OsbHLH002/OsICE1;RAP-DB Gene Name Synonym(s)=basic helix-loop-helix protein 002%2C Inducer of CBF expression 1;Oryzabase Gene Symbol Synonym(s)=OsbHLH002%2C bHLH002%2C OsbHLH2%2C bHLH2%2C OsICE1%2C ICE1%2C OsbHLH002/OsICE1;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 002%2C Inducer of CBF expression 1;Note=bHLH transcription factor%2C Positive regulation of chilling tolerance%2C Control of stomatal initiation%2C Regulation of mature stoma differentiation;Transcript_evidence=AK109915;ORF_evidence=Q2R3F6;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Helix-loop-helix DNA-binding domain superfamily (IPR036638),Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);NIAS_FLcDNA=002-150-C06;Manual Curation=March 5%2C 2020;Literature_PMID=30825332,29257952,DOI:10.5511/plantbiotechnology.11.0421a;Oryzabase=10930;Expression=AK109915;TENOR=Os11t0523700-01;KEGG=Os11t0523700-01;Subcellular location=nucleus (GO:0005634)
Chr11	irgsp1_rep	five_prime_UTR	18922046	18922102	.	+	.	Parent=Os11t0523700-01
Chr11	irgsp1_rep	CDS	18922103	18923194	.	+	0	Parent=Os11t0523700-01
Chr11	irgsp1_rep	CDS	18924089	18924316	.	+	0	Parent=Os11t0523700-01
Chr11	irgsp1_rep	CDS	18924552	18924722	.	+	0	Parent=Os11t0523700-01
Chr11	irgsp1_rep	CDS	18924842	18924925	.	+	0	Parent=Os11t0523700-01
Chr11	irgsp1_rep	three_prime_UTR	18924926	18925254	.	+	.	Parent=Os11t0523700-01
Chr11	irgsp1_rep	mRNA	18935399	18941686	.	-	.	ID=Os11t0523800-01;Name=Os11t0523800-01;Locus_id=Os11g0523800;CGSNL Gene Symbol=ARF1;CGSNL Gene Name=AUXIN RESPONSE FACTOR 1;Oryzabase Gene Symbol Synonym(s)=OsARF1%2C arf1%2C OsARF23%2C ARF23;Oryzabase Gene Name Synonym(s)=auxin response factor-1%2C auxin response factor 1%2C auxin response factor-23%2C auxin response factor 23;Note=Similar to Isoform 3 of Auxin response factor 23.;Transcript_evidence=AK065936 (DDBJ%2C Best hit);ORF_evidence=Q2R3F5-3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: response to hormone stimulus (GO:0009725),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),Auxin response factor (IPR010525),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=J013045A03;Oryzabase=6089;Expression=AK065936;TENOR=Os11t0523800-01;KEGG=Os11t0523800-01
Chr11	irgsp1_rep	five_prime_UTR	18941454	18941686	.	-	.	Parent=Os11t0523800-01
Chr11	irgsp1_rep	CDS	18941387	18941453	.	-	0	Parent=Os11t0523800-01
Chr11	irgsp1_rep	CDS	18941146	18941285	.	-	2	Parent=Os11t0523800-01
Chr11	irgsp1_rep	CDS	18940213	18940308	.	-	0	Parent=Os11t0523800-01
Chr11	irgsp1_rep	CDS	18940074	18940130	.	-	0	Parent=Os11t0523800-01
Chr11	irgsp1_rep	CDS	18939796	18939966	.	-	0	Parent=Os11t0523800-01
Chr11	irgsp1_rep	CDS	18939596	18939680	.	-	0	Parent=Os11t0523800-01
Chr11	irgsp1_rep	CDS	18938971	18939061	.	-	2	Parent=Os11t0523800-01
Chr11	irgsp1_rep	CDS	18938718	18938882	.	-	1	Parent=Os11t0523800-01
Chr11	irgsp1_rep	CDS	18938421	18938540	.	-	1	Parent=Os11t0523800-01
Chr11	irgsp1_rep	CDS	18938222	18938330	.	-	1	Parent=Os11t0523800-01
Chr11	irgsp1_rep	three_prime_UTR	18938006	18938221	.	-	.	Parent=Os11t0523800-01
Chr11	irgsp1_rep	three_prime_UTR	18936984	18937927	.	-	.	Parent=Os11t0523800-01
Chr11	irgsp1_rep	three_prime_UTR	18936242	18936432	.	-	.	Parent=Os11t0523800-01
Chr11	irgsp1_rep	three_prime_UTR	18935953	18936150	.	-	.	Parent=Os11t0523800-01
Chr11	irgsp1_rep	three_prime_UTR	18935399	18935852	.	-	.	Parent=Os11t0523800-01
Chr11	irgsp1_rep	mRNA	18981927	18987762	.	-	.	ID=Os11t0524051-00;Name=Os11t0524051-00;Locus_id=Os11g0524051;Note=Hypothetical gene.;Transcript_evidence=BT019300 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0524051-00
Chr11	irgsp1_rep	five_prime_UTR	18987617	18987762	.	-	.	Parent=Os11t0524051-00
Chr11	irgsp1_rep	five_prime_UTR	18987429	18987519	.	-	.	Parent=Os11t0524051-00
Chr11	irgsp1_rep	five_prime_UTR	18987197	18987294	.	-	.	Parent=Os11t0524051-00
Chr11	irgsp1_rep	five_prime_UTR	18985409	18985529	.	-	.	Parent=Os11t0524051-00
Chr11	irgsp1_rep	five_prime_UTR	18983744	18983868	.	-	.	Parent=Os11t0524051-00
Chr11	irgsp1_rep	CDS	18983709	18983743	.	-	0	Parent=Os11t0524051-00
Chr11	irgsp1_rep	CDS	18981927	18982187	.	-	1	Parent=Os11t0524051-00
Chr11	irgsp1_rep	mRNA	18981895	18987914	.	+	.	ID=Os11t0524300-01;Name=Os11t0524300-01;Locus_id=Os11g0524300;Note=Protein of unknown function DUF1001 family protein.;Transcript_evidence=AK106093 (DDBJ%2C Best hit);ORF_evidence=E6NU06 (UniProt);InterPro=Protein of unknown function DUF1001 (IPR010404);NIAS_FLcDNA=001-207-B10;Expression=AK106093;TENOR=Os11t0524300-01;KEGG=Os11t0524300-01
Chr11	irgsp1_rep	five_prime_UTR	18981895	18981986	.	+	.	Parent=Os11t0524300-01
Chr11	irgsp1_rep	CDS	18981987	18982181	.	+	0	Parent=Os11t0524300-01
Chr11	irgsp1_rep	CDS	18982381	18982430	.	+	0	Parent=Os11t0524300-01
Chr11	irgsp1_rep	CDS	18983749	18983809	.	+	1	Parent=Os11t0524300-01
Chr11	irgsp1_rep	CDS	18983895	18983930	.	+	0	Parent=Os11t0524300-01
Chr11	irgsp1_rep	CDS	18984775	18984825	.	+	0	Parent=Os11t0524300-01
Chr11	irgsp1_rep	CDS	18985430	18985522	.	+	0	Parent=Os11t0524300-01
Chr11	irgsp1_rep	CDS	18987194	18987298	.	+	0	Parent=Os11t0524300-01
Chr11	irgsp1_rep	CDS	18987431	18987523	.	+	0	Parent=Os11t0524300-01
Chr11	irgsp1_rep	CDS	18987621	18987764	.	+	0	Parent=Os11t0524300-01
Chr11	irgsp1_rep	three_prime_UTR	18987765	18987914	.	+	.	Parent=Os11t0524300-01
Chr11	irgsp1_rep	mRNA	18994678	19000728	.	-	.	ID=Os11t0524601-00;Name=Os11t0524601-00;Locus_id=Os11g0524601;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R3E9 (UniProt);InterPro=Mannose-binding lectin (IPR001229);TENOR=Os11t0524601-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	19000535	19000728	.	-	0	Parent=Os11t0524601-00
Chr11	irgsp1_rep	CDS	18998440	18998496	.	-	1	Parent=Os11t0524601-00
Chr11	irgsp1_rep	CDS	18995364	18995982	.	-	1	Parent=Os11t0524601-00
Chr11	irgsp1_rep	CDS	18995079	18995282	.	-	0	Parent=Os11t0524601-00
Chr11	irgsp1_rep	CDS	18994678	18994956	.	-	0	Parent=Os11t0524601-00
Chr11	irgsp1_rep	mRNA	19022642	19026620	.	-	.	ID=Os11t0524900-00;Name=Os11t0524900-00;Locus_id=Os11g0524900;Oryzabase Gene Symbol Synonym(s)=OsSTA260;Note=Similar to Jacalin-like lectin domain containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R3E5 (UniProt);InterPro=Mannose-binding lectin (IPR001229);Oryzabase=19524;TENOR=Os11t0524900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	19025730	19026620	.	-	0	Parent=Os11t0524900-00
Chr11	irgsp1_rep	CDS	19025447	19025647	.	-	0	Parent=Os11t0524900-00
Chr11	irgsp1_rep	CDS	19025074	19025340	.	-	0	Parent=Os11t0524900-00
Chr11	irgsp1_rep	CDS	19024793	19024990	.	-	0	Parent=Os11t0524900-00
Chr11	irgsp1_rep	CDS	19023703	19023969	.	-	0	Parent=Os11t0524900-00
Chr11	irgsp1_rep	CDS	19023536	19023595	.	-	0	Parent=Os11t0524900-00
Chr11	irgsp1_rep	CDS	19022801	19023003	.	-	0	Parent=Os11t0524900-00
Chr11	irgsp1_rep	CDS	19022642	19022675	.	-	1	Parent=Os11t0524900-00
Chr11	irgsp1_rep	mRNA	19048566	19052876	.	+	.	ID=Os11t0525200-01;Name=Os11t0525200-01;Locus_id=Os11g0525200;RAP-DB Gene Symbol Synonym(s)=OsCYP51G1;RAP-DB Gene Name Synonym(s)=cytoChrome P450 subfamily 51 G1;CGSNL Gene Symbol=CYP51G1;CGSNL Gene Name=P-450 51G1;Oryzabase Gene Symbol Synonym(s)=OsCYP51G1;Oryzabase Gene Name Synonym(s)=CytoChrome P450 51G1;Note=Obtusifoliol 14&alpha%3B-demethylase%2C Phytosterol biosynthesis%2C Regulation of heading date and seed production;Transcript_evidence=AK121491;ORF_evidence=Q2R3E2;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: monooxygenase activity (GO:0004497),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 superfamily (IPR036396),CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group IV (IPR002403),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J023150P16;Manual Curation=June 23%2C 2020;Literature_PMID=32560825,21501172;Oryzabase=17987;Expression=AK121491;TENOR=Os11t0525200-01;KEGG=Os11t0525200-01 (EC:1.14.13.70);Subcellular location=endoplasmic reticulum (GO:0005783)
Chr11	irgsp1_rep	five_prime_UTR	19048566	19048750	.	+	.	Parent=Os11t0525200-01
Chr11	irgsp1_rep	five_prime_UTR	19049143	19049154	.	+	.	Parent=Os11t0525200-01
Chr11	irgsp1_rep	CDS	19049155	19049625	.	+	0	Parent=Os11t0525200-01
Chr11	irgsp1_rep	CDS	19051493	19052494	.	+	0	Parent=Os11t0525200-01
Chr11	irgsp1_rep	three_prime_UTR	19052495	19052876	.	+	.	Parent=Os11t0525200-01
Chr11	irgsp1_rep	mRNA	19048701	19052754	.	+	.	ID=Os11t0525200-02;Name=Os11t0525200-02;Locus_id=Os11g0525200;CGSNL Gene Symbol=CYP51G1;CGSNL Gene Name=P-450 51G1;Oryzabase Gene Symbol Synonym(s)=OsCYP51G1;Oryzabase Gene Name Synonym(s)=CytoChrome P450 51G1;Note=Similar to CytoChrome P450 51 (EC 1.14.13.70) (CYPLI) (P450-LIA1) (Obtusifoliol 14-alpha demethylase) (Fragment).;Transcript_evidence=AK060487 (DDBJ%2C Best hit);ORF_evidence=Q84YE6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: monooxygenase activity (GO:0004497),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group IV (IPR002403),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=001-014-C05;Oryzabase=17987;Expression=AK060487;TENOR=Os11t0525200-02;KEGG=Os11t0525200-02 (EC:1.14.13.70)
Chr11	irgsp1_rep	five_prime_UTR	19048701	19048750	.	+	.	Parent=Os11t0525200-02
Chr11	irgsp1_rep	five_prime_UTR	19049143	19049154	.	+	.	Parent=Os11t0525200-02
Chr11	irgsp1_rep	CDS	19049155	19049625	.	+	0	Parent=Os11t0525200-02
Chr11	irgsp1_rep	CDS	19051493	19052494	.	+	0	Parent=Os11t0525200-02
Chr11	irgsp1_rep	three_prime_UTR	19052495	19052754	.	+	.	Parent=Os11t0525200-02
Chr11	irgsp1_rep	mRNA	19056106	19056868	.	-	.	ID=Os11t0525500-01;Name=Os11t0525500-01;Locus_id=Os11g0525500;Note=Sugar transporter%2C conserved site domain containing protein.;Transcript_evidence=AK108278 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-141-C10;Expression=AK108278;TENOR=Os11t0525500-01;KEGG=Os11t0525500-01
Chr11	irgsp1_rep	five_prime_UTR	19056756	19056868	.	-	.	Parent=Os11t0525500-01
Chr11	irgsp1_rep	CDS	19056192	19056755	.	-	0	Parent=Os11t0525500-01
Chr11	irgsp1_rep	three_prime_UTR	19056106	19056191	.	-	.	Parent=Os11t0525500-01
Chr11	irgsp1_rep	mRNA	19058420	19067600	.	+	.	ID=Os11t0525600-01;Name=Os11t0525600-01;Locus_id=Os11g0525600;Oryzabase Gene Name Synonym(s)=glycosyl hydrolases family 38 protein;Note=Similar to Alpha-mannosidase.;Transcript_evidence=AK068415 (DDBJ%2C Best hit);ORF_evidence=E7BYE5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: mannose metabolic process (GO:0006013),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: alpha-mannosidase activity (GO:0004559),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: mannosidase activity (GO:0015923),Molecular Function: carbohydrate binding (GO:0030246),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 38%2C core (IPR000602),Glycoside hydrolase-type carbohydrate-binding (IPR011013),Glycoside hydrolase/deacetylase%2C beta/alpha-barrel (IPR011330),Glycosyl hydrolases 38%2C C-terminal (IPR011682),Glycosyl hydrolase%2C family 13%2C all-beta (IPR013780),Glycoside hydrolase%2C family 38%2C central domain (IPR015341);NIAS_FLcDNA=J013151H23;Oryzabase=19090;Expression=AK068415;TENOR=Os11t0525600-01;KEGG=Os11t0525600-01 (EC:3.2.1.24)
Chr11	irgsp1_rep	five_prime_UTR	19058420	19058544	.	+	.	Parent=Os11t0525600-01
Chr11	irgsp1_rep	CDS	19058545	19058757	.	+	0	Parent=Os11t0525600-01
Chr11	irgsp1_rep	CDS	19058987	19059070	.	+	0	Parent=Os11t0525600-01
Chr11	irgsp1_rep	CDS	19059632	19059720	.	+	0	Parent=Os11t0525600-01
Chr11	irgsp1_rep	CDS	19059812	19059986	.	+	1	Parent=Os11t0525600-01
Chr11	irgsp1_rep	CDS	19060293	19060412	.	+	0	Parent=Os11t0525600-01
Chr11	irgsp1_rep	CDS	19060514	19060600	.	+	0	Parent=Os11t0525600-01
Chr11	irgsp1_rep	CDS	19060678	19060749	.	+	0	Parent=Os11t0525600-01
Chr11	irgsp1_rep	CDS	19061089	19061202	.	+	0	Parent=Os11t0525600-01
Chr11	irgsp1_rep	CDS	19061310	19061410	.	+	0	Parent=Os11t0525600-01
Chr11	irgsp1_rep	CDS	19061499	19061592	.	+	1	Parent=Os11t0525600-01
Chr11	irgsp1_rep	CDS	19061717	19061884	.	+	0	Parent=Os11t0525600-01
Chr11	irgsp1_rep	CDS	19061969	19062058	.	+	0	Parent=Os11t0525600-01
Chr11	irgsp1_rep	CDS	19062210	19062275	.	+	0	Parent=Os11t0525600-01
Chr11	irgsp1_rep	CDS	19062398	19062454	.	+	0	Parent=Os11t0525600-01
Chr11	irgsp1_rep	CDS	19062631	19062850	.	+	0	Parent=Os11t0525600-01
Chr11	irgsp1_rep	CDS	19062938	19063074	.	+	2	Parent=Os11t0525600-01
Chr11	irgsp1_rep	CDS	19063496	19063564	.	+	0	Parent=Os11t0525600-01
Chr11	irgsp1_rep	CDS	19063645	19063704	.	+	0	Parent=Os11t0525600-01
Chr11	irgsp1_rep	CDS	19063850	19063921	.	+	0	Parent=Os11t0525600-01
Chr11	irgsp1_rep	CDS	19064094	19064141	.	+	0	Parent=Os11t0525600-01
Chr11	irgsp1_rep	CDS	19064299	19064418	.	+	0	Parent=Os11t0525600-01
Chr11	irgsp1_rep	CDS	19064666	19064731	.	+	0	Parent=Os11t0525600-01
Chr11	irgsp1_rep	CDS	19065264	19065376	.	+	0	Parent=Os11t0525600-01
Chr11	irgsp1_rep	CDS	19065744	19065828	.	+	1	Parent=Os11t0525600-01
Chr11	irgsp1_rep	CDS	19066169	19066279	.	+	0	Parent=Os11t0525600-01
Chr11	irgsp1_rep	CDS	19066359	19066454	.	+	0	Parent=Os11t0525600-01
Chr11	irgsp1_rep	CDS	19066863	19066910	.	+	0	Parent=Os11t0525600-01
Chr11	irgsp1_rep	CDS	19066998	19067066	.	+	0	Parent=Os11t0525600-01
Chr11	irgsp1_rep	CDS	19067158	19067376	.	+	0	Parent=Os11t0525600-01
Chr11	irgsp1_rep	three_prime_UTR	19067377	19067600	.	+	.	Parent=Os11t0525600-01
Chr11	irgsp1_rep	mRNA	19058466	19067600	.	+	.	ID=Os11t0525600-02;Name=Os11t0525600-02;Locus_id=Os11g0525600;Oryzabase Gene Name Synonym(s)=glycosyl hydrolases family 38 protein;Note=Similar to Alpha-mannosidase.;Transcript_evidence=AK098929 (DDBJ%2C Best hit);ORF_evidence=E7BYE5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: mannose metabolic process (GO:0006013),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: alpha-mannosidase activity (GO:0004559),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: mannosidase activity (GO:0015923),Molecular Function: carbohydrate binding (GO:0030246),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 38%2C core (IPR000602),Glycoside hydrolase-type carbohydrate-binding (IPR011013),Glycoside hydrolase/deacetylase%2C beta/alpha-barrel (IPR011330),Glycosyl hydrolases 38%2C C-terminal (IPR011682),Glycosyl hydrolase%2C family 13%2C all-beta (IPR013780),Glycoside hydrolase%2C family 38%2C central domain (IPR015341);NIAS_FLcDNA=J013020C01;Oryzabase=19090;Expression=AK098929;TENOR=Os11t0525600-02;KEGG=Os11t0525600-02 (EC:3.2.1.24)
Chr11	irgsp1_rep	five_prime_UTR	19058466	19058544	.	+	.	Parent=Os11t0525600-02
Chr11	irgsp1_rep	CDS	19058545	19058757	.	+	0	Parent=Os11t0525600-02
Chr11	irgsp1_rep	CDS	19058987	19059070	.	+	0	Parent=Os11t0525600-02
Chr11	irgsp1_rep	CDS	19059632	19059720	.	+	0	Parent=Os11t0525600-02
Chr11	irgsp1_rep	CDS	19059812	19059986	.	+	1	Parent=Os11t0525600-02
Chr11	irgsp1_rep	CDS	19060293	19060412	.	+	0	Parent=Os11t0525600-02
Chr11	irgsp1_rep	CDS	19060514	19060600	.	+	0	Parent=Os11t0525600-02
Chr11	irgsp1_rep	CDS	19060678	19060749	.	+	0	Parent=Os11t0525600-02
Chr11	irgsp1_rep	CDS	19061089	19061202	.	+	0	Parent=Os11t0525600-02
Chr11	irgsp1_rep	CDS	19061310	19061410	.	+	0	Parent=Os11t0525600-02
Chr11	irgsp1_rep	CDS	19061499	19061592	.	+	1	Parent=Os11t0525600-02
Chr11	irgsp1_rep	CDS	19061717	19061884	.	+	0	Parent=Os11t0525600-02
Chr11	irgsp1_rep	CDS	19061969	19062058	.	+	0	Parent=Os11t0525600-02
Chr11	irgsp1_rep	CDS	19062210	19062275	.	+	0	Parent=Os11t0525600-02
Chr11	irgsp1_rep	CDS	19062398	19062454	.	+	0	Parent=Os11t0525600-02
Chr11	irgsp1_rep	CDS	19062631	19062850	.	+	0	Parent=Os11t0525600-02
Chr11	irgsp1_rep	CDS	19062938	19063074	.	+	2	Parent=Os11t0525600-02
Chr11	irgsp1_rep	CDS	19063496	19063564	.	+	0	Parent=Os11t0525600-02
Chr11	irgsp1_rep	CDS	19063645	19063704	.	+	0	Parent=Os11t0525600-02
Chr11	irgsp1_rep	CDS	19063850	19063921	.	+	0	Parent=Os11t0525600-02
Chr11	irgsp1_rep	CDS	19064094	19064141	.	+	0	Parent=Os11t0525600-02
Chr11	irgsp1_rep	CDS	19064299	19064418	.	+	0	Parent=Os11t0525600-02
Chr11	irgsp1_rep	CDS	19064666	19064731	.	+	0	Parent=Os11t0525600-02
Chr11	irgsp1_rep	CDS	19065264	19065376	.	+	0	Parent=Os11t0525600-02
Chr11	irgsp1_rep	CDS	19065744	19065828	.	+	1	Parent=Os11t0525600-02
Chr11	irgsp1_rep	CDS	19066169	19066279	.	+	0	Parent=Os11t0525600-02
Chr11	irgsp1_rep	CDS	19066359	19066454	.	+	0	Parent=Os11t0525600-02
Chr11	irgsp1_rep	CDS	19066863	19066910	.	+	0	Parent=Os11t0525600-02
Chr11	irgsp1_rep	CDS	19066998	19067066	.	+	0	Parent=Os11t0525600-02
Chr11	irgsp1_rep	CDS	19067158	19067376	.	+	0	Parent=Os11t0525600-02
Chr11	irgsp1_rep	three_prime_UTR	19067377	19067600	.	+	.	Parent=Os11t0525600-02
Chr11	irgsp1_rep	mRNA	19059681	19067585	.	+	.	ID=Os11t0525600-03;Name=Os11t0525600-03;Locus_id=Os11g0525600;Oryzabase Gene Name Synonym(s)=glycosyl hydrolases family 38 protein;Note=Similar to predicted protein.;Transcript_evidence=AK120149 (DDBJ%2C Best hit);ORF_evidence=E7BYE5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: mannose metabolic process (GO:0006013),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: alpha-mannosidase activity (GO:0004559),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: mannosidase activity (GO:0015923),Molecular Function: carbohydrate binding (GO:0030246),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 38%2C core (IPR000602),Glycoside hydrolase-type carbohydrate-binding (IPR011013),Glycoside hydrolase/deacetylase%2C beta/alpha-barrel (IPR011330),Glycosyl hydrolases 38%2C C-terminal (IPR011682),Glycosyl hydrolase%2C family 13%2C all-beta (IPR013780),Glycoside hydrolase%2C family 38%2C central domain (IPR015341);NIAS_FLcDNA=J013029J19;Oryzabase=19090;Expression=AK120149;TENOR=Os11t0525600-03;KEGG=Os11t0525600-03 (EC:3.2.1.24)
Chr11	irgsp1_rep	five_prime_UTR	19059681	19059682	.	+	.	Parent=Os11t0525600-03
Chr11	irgsp1_rep	CDS	19059683	19059720	.	+	0	Parent=Os11t0525600-03
Chr11	irgsp1_rep	CDS	19059812	19059986	.	+	1	Parent=Os11t0525600-03
Chr11	irgsp1_rep	CDS	19060293	19060412	.	+	0	Parent=Os11t0525600-03
Chr11	irgsp1_rep	CDS	19060514	19060600	.	+	0	Parent=Os11t0525600-03
Chr11	irgsp1_rep	CDS	19060678	19060749	.	+	0	Parent=Os11t0525600-03
Chr11	irgsp1_rep	CDS	19061089	19061202	.	+	0	Parent=Os11t0525600-03
Chr11	irgsp1_rep	CDS	19061310	19061410	.	+	0	Parent=Os11t0525600-03
Chr11	irgsp1_rep	CDS	19061499	19061592	.	+	1	Parent=Os11t0525600-03
Chr11	irgsp1_rep	CDS	19061717	19061884	.	+	0	Parent=Os11t0525600-03
Chr11	irgsp1_rep	CDS	19061969	19062058	.	+	0	Parent=Os11t0525600-03
Chr11	irgsp1_rep	CDS	19062210	19062275	.	+	0	Parent=Os11t0525600-03
Chr11	irgsp1_rep	CDS	19062398	19062454	.	+	0	Parent=Os11t0525600-03
Chr11	irgsp1_rep	CDS	19062631	19062850	.	+	0	Parent=Os11t0525600-03
Chr11	irgsp1_rep	CDS	19062938	19063074	.	+	2	Parent=Os11t0525600-03
Chr11	irgsp1_rep	CDS	19063496	19063564	.	+	0	Parent=Os11t0525600-03
Chr11	irgsp1_rep	CDS	19063645	19063704	.	+	0	Parent=Os11t0525600-03
Chr11	irgsp1_rep	CDS	19063850	19063921	.	+	0	Parent=Os11t0525600-03
Chr11	irgsp1_rep	CDS	19064094	19064141	.	+	0	Parent=Os11t0525600-03
Chr11	irgsp1_rep	CDS	19064299	19064418	.	+	0	Parent=Os11t0525600-03
Chr11	irgsp1_rep	CDS	19064666	19064731	.	+	0	Parent=Os11t0525600-03
Chr11	irgsp1_rep	CDS	19065264	19065376	.	+	0	Parent=Os11t0525600-03
Chr11	irgsp1_rep	CDS	19065744	19065828	.	+	1	Parent=Os11t0525600-03
Chr11	irgsp1_rep	CDS	19066169	19066279	.	+	0	Parent=Os11t0525600-03
Chr11	irgsp1_rep	CDS	19066359	19066454	.	+	0	Parent=Os11t0525600-03
Chr11	irgsp1_rep	CDS	19066863	19066910	.	+	0	Parent=Os11t0525600-03
Chr11	irgsp1_rep	CDS	19066998	19067066	.	+	0	Parent=Os11t0525600-03
Chr11	irgsp1_rep	CDS	19067158	19067376	.	+	0	Parent=Os11t0525600-03
Chr11	irgsp1_rep	three_prime_UTR	19067377	19067585	.	+	.	Parent=Os11t0525600-03
Chr11	irgsp1_rep	mRNA	19061732	19067600	.	+	.	ID=Os11t0525600-04;Name=Os11t0525600-04;Locus_id=Os11g0525600;Oryzabase Gene Name Synonym(s)=glycosyl hydrolases family 38 protein;Note=Similar to predicted protein.;Transcript_evidence=AK102653 (DDBJ%2C Best hit);ORF_evidence=E7BYE5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: mannose metabolic process (GO:0006013),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: mannosidase activity (GO:0015923),Molecular Function: carbohydrate binding (GO:0030246),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase-type carbohydrate-binding (IPR011013),Glycosyl hydrolases 38%2C C-terminal (IPR011682),Glycosyl hydrolase%2C family 13%2C all-beta (IPR013780),Glycoside hydrolase%2C family 38%2C central domain (IPR015341);NIAS_FLcDNA=J033101E19;Oryzabase=19090;Expression=AK102653;TENOR=Os11t0525600-04;KEGG=Os11t0525600-04 (EC:3.2.1.24)
Chr11	irgsp1_rep	CDS	19061732	19061884	.	+	0	Parent=Os11t0525600-04
Chr11	irgsp1_rep	CDS	19061969	19062058	.	+	0	Parent=Os11t0525600-04
Chr11	irgsp1_rep	CDS	19062210	19062275	.	+	0	Parent=Os11t0525600-04
Chr11	irgsp1_rep	CDS	19062398	19062454	.	+	0	Parent=Os11t0525600-04
Chr11	irgsp1_rep	CDS	19062631	19062850	.	+	0	Parent=Os11t0525600-04
Chr11	irgsp1_rep	CDS	19062938	19063074	.	+	2	Parent=Os11t0525600-04
Chr11	irgsp1_rep	CDS	19063496	19063564	.	+	0	Parent=Os11t0525600-04
Chr11	irgsp1_rep	CDS	19063645	19063704	.	+	0	Parent=Os11t0525600-04
Chr11	irgsp1_rep	CDS	19063850	19063921	.	+	0	Parent=Os11t0525600-04
Chr11	irgsp1_rep	CDS	19064094	19064141	.	+	0	Parent=Os11t0525600-04
Chr11	irgsp1_rep	CDS	19064299	19064418	.	+	0	Parent=Os11t0525600-04
Chr11	irgsp1_rep	CDS	19064666	19064731	.	+	0	Parent=Os11t0525600-04
Chr11	irgsp1_rep	CDS	19065264	19065376	.	+	0	Parent=Os11t0525600-04
Chr11	irgsp1_rep	CDS	19065744	19065828	.	+	1	Parent=Os11t0525600-04
Chr11	irgsp1_rep	CDS	19066169	19066279	.	+	0	Parent=Os11t0525600-04
Chr11	irgsp1_rep	CDS	19066359	19066454	.	+	0	Parent=Os11t0525600-04
Chr11	irgsp1_rep	CDS	19066863	19066910	.	+	0	Parent=Os11t0525600-04
Chr11	irgsp1_rep	CDS	19066998	19067066	.	+	0	Parent=Os11t0525600-04
Chr11	irgsp1_rep	CDS	19067158	19067376	.	+	0	Parent=Os11t0525600-04
Chr11	irgsp1_rep	three_prime_UTR	19067377	19067600	.	+	.	Parent=Os11t0525600-04
Chr11	irgsp1_rep	mRNA	19062630	19067599	.	+	.	ID=Os11t0525600-05;Name=Os11t0525600-05;Locus_id=Os11g0525600;Oryzabase Gene Name Synonym(s)=glycosyl hydrolases family 38 protein;Note=Similar to predicted protein.;Transcript_evidence=AK061950 (DDBJ%2C Best hit);ORF_evidence=E7BYE5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: mannose metabolic process (GO:0006013),Molecular Function: catalytic activity (GO:0003824),Molecular Function: mannosidase activity (GO:0015923),Molecular Function: carbohydrate binding (GO:0030246),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase-type carbohydrate-binding (IPR011013),Glycosyl hydrolases 38%2C C-terminal (IPR011682),Glycosyl hydrolase%2C family 13%2C all-beta (IPR013780);NIAS_FLcDNA=001-042-E10;Oryzabase=19090;Expression=AK061950;TENOR=Os11t0525600-05;KEGG=Os11t0525600-05 (EC:3.2.1.24)
Chr11	irgsp1_rep	five_prime_UTR	19062630	19062630	.	+	.	Parent=Os11t0525600-05
Chr11	irgsp1_rep	CDS	19062631	19062850	.	+	0	Parent=Os11t0525600-05
Chr11	irgsp1_rep	CDS	19062938	19063074	.	+	2	Parent=Os11t0525600-05
Chr11	irgsp1_rep	CDS	19063496	19063564	.	+	0	Parent=Os11t0525600-05
Chr11	irgsp1_rep	CDS	19063645	19063704	.	+	0	Parent=Os11t0525600-05
Chr11	irgsp1_rep	CDS	19063850	19063921	.	+	0	Parent=Os11t0525600-05
Chr11	irgsp1_rep	CDS	19064094	19064141	.	+	0	Parent=Os11t0525600-05
Chr11	irgsp1_rep	CDS	19064299	19064418	.	+	0	Parent=Os11t0525600-05
Chr11	irgsp1_rep	CDS	19064666	19064731	.	+	0	Parent=Os11t0525600-05
Chr11	irgsp1_rep	CDS	19065264	19065376	.	+	0	Parent=Os11t0525600-05
Chr11	irgsp1_rep	CDS	19065744	19065828	.	+	1	Parent=Os11t0525600-05
Chr11	irgsp1_rep	CDS	19066169	19066279	.	+	0	Parent=Os11t0525600-05
Chr11	irgsp1_rep	CDS	19066359	19066454	.	+	0	Parent=Os11t0525600-05
Chr11	irgsp1_rep	CDS	19066863	19066910	.	+	0	Parent=Os11t0525600-05
Chr11	irgsp1_rep	CDS	19066998	19067066	.	+	0	Parent=Os11t0525600-05
Chr11	irgsp1_rep	CDS	19067158	19067376	.	+	0	Parent=Os11t0525600-05
Chr11	irgsp1_rep	three_prime_UTR	19067377	19067599	.	+	.	Parent=Os11t0525600-05
Chr11	irgsp1_rep	mRNA	19069221	19075959	.	+	.	ID=Os11t0525700-01;Name=Os11t0525700-01;Locus_id=Os11g0525700;Note=Development and cell death domain domain containing protein.;Transcript_evidence=AK073354 (DDBJ%2C Best hit);ORF_evidence=Q2R3D9 (UniProt);InterPro=Development/cell death domain (IPR013989);NIAS_FLcDNA=J033028A21;Expression=AK073354;TENOR=Os11t0525700-01;KEGG=Os11t0525700-01
Chr11	irgsp1_rep	five_prime_UTR	19069221	19069289	.	+	.	Parent=Os11t0525700-01
Chr11	irgsp1_rep	CDS	19069290	19069652	.	+	0	Parent=Os11t0525700-01
Chr11	irgsp1_rep	CDS	19071044	19071157	.	+	0	Parent=Os11t0525700-01
Chr11	irgsp1_rep	CDS	19072032	19072124	.	+	0	Parent=Os11t0525700-01
Chr11	irgsp1_rep	CDS	19072258	19072590	.	+	0	Parent=Os11t0525700-01
Chr11	irgsp1_rep	CDS	19073729	19073842	.	+	0	Parent=Os11t0525700-01
Chr11	irgsp1_rep	CDS	19074429	19074922	.	+	0	Parent=Os11t0525700-01
Chr11	irgsp1_rep	CDS	19075216	19075639	.	+	1	Parent=Os11t0525700-01
Chr11	irgsp1_rep	three_prime_UTR	19075640	19075959	.	+	.	Parent=Os11t0525700-01
Chr11	irgsp1_rep	mRNA	19076672	19079302	.	-	.	ID=Os11t0525800-01;Name=Os11t0525800-01;Locus_id=Os11g0525800;Note=Similar to retrotransposon protein.;Transcript_evidence=AK120142 (DDBJ%2C Best hit);ORF_evidence=NP_001150590.1 (RefSeq);NIAS_FLcDNA=J013028E05;Expression=AK120142;TENOR=Os11t0525800-01;KEGG=Os11t0525800-01
Chr11	irgsp1_rep	five_prime_UTR	19079231	19079302	.	-	.	Parent=Os11t0525800-01
Chr11	irgsp1_rep	CDS	19078976	19079230	.	-	0	Parent=Os11t0525800-01
Chr11	irgsp1_rep	three_prime_UTR	19076672	19078975	.	-	.	Parent=Os11t0525800-01
Chr11	irgsp1_rep	mRNA	19076618	19079301	.	-	.	ID=Os11t0525800-02;Name=Os11t0525800-02;Locus_id=Os11g0525800;Note=Similar to ADL308Cp.;Transcript_evidence=AK059719 (DDBJ%2C Best hit);ORF_evidence=NP_001150590.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: N-acetyltransferase activity (GO:0008080);InterPro=GCN5-related N-acetyltransferase (GNAT) domain (IPR000182),Acyl-CoA N-acyltransferase (IPR016181);NIAS_FLcDNA=001-032-G09;Expression=AK059719;TENOR=Os11t0525800-02;KEGG=Os11t0525800-02
Chr11	irgsp1_rep	five_prime_UTR	19079231	19079301	.	-	.	Parent=Os11t0525800-02
Chr11	irgsp1_rep	CDS	19079036	19079230	.	-	0	Parent=Os11t0525800-02
Chr11	irgsp1_rep	CDS	19078806	19078932	.	-	0	Parent=Os11t0525800-02
Chr11	irgsp1_rep	CDS	19077249	19077304	.	-	2	Parent=Os11t0525800-02
Chr11	irgsp1_rep	CDS	19076812	19077027	.	-	0	Parent=Os11t0525800-02
Chr11	irgsp1_rep	three_prime_UTR	19076618	19076811	.	-	.	Parent=Os11t0525800-02
Chr11	irgsp1_rep	mRNA	19082900	19083859	.	-	.	ID=Os11t0525900-00;Name=Os11t0525900-00;Locus_id=Os11g0525900;Note=Zinc finger%2C GRF-type domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2ZEU6 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C GRF-type (IPR010666),Ribonuclease H-like (IPR012337),Exonuclease%2C RNase T/DNA polymerase III (IPR013520);TENOR=Os11t0525900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	19083368	19083859	.	-	0	Parent=Os11t0525900-00
Chr11	irgsp1_rep	CDS	19082900	19083058	.	-	0	Parent=Os11t0525900-00
Chr11	irgsp1_rep	mRNA	19087538	19088040	.	+	.	ID=Os11t0526000-01;Name=Os11t0526000-01;Locus_id=Os11g0526000;Note=Hypothetical gene.;Transcript_evidence=AK063606 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-118-C10;Expression=AK063606;TENOR=Os11t0526000-01;KEGG=Os11t0526000-01
Chr11	irgsp1_rep	five_prime_UTR	19087538	19087539	.	+	.	Parent=Os11t0526000-01
Chr11	irgsp1_rep	CDS	19087540	19087938	.	+	0	Parent=Os11t0526000-01
Chr11	irgsp1_rep	three_prime_UTR	19087939	19088040	.	+	.	Parent=Os11t0526000-01
Chr11	irgsp1_rep	mRNA	19092888	19095132	.	+	.	ID=Os11t0526200-01;Name=Os11t0526200-01;Locus_id=Os11g0526200;Note=Similar to predicted protein.;Transcript_evidence=AK243337 (DDBJ%2C Best hit);ORF_evidence=NP_566797.1 (RefSeq);InterPro=Protein of unknown function DUF3529 (IPR021919);NIAS_FLcDNA=J100059E19;TENOR=Os11t0526200-01;KEGG=Os11t0526200-01
Chr11	irgsp1_rep	five_prime_UTR	19092888	19092888	.	+	.	Parent=Os11t0526200-01
Chr11	irgsp1_rep	CDS	19092889	19093215	.	+	0	Parent=Os11t0526200-01
Chr11	irgsp1_rep	CDS	19093962	19094086	.	+	0	Parent=Os11t0526200-01
Chr11	irgsp1_rep	CDS	19094645	19094797	.	+	1	Parent=Os11t0526200-01
Chr11	irgsp1_rep	CDS	19094882	19095068	.	+	1	Parent=Os11t0526200-01
Chr11	irgsp1_rep	three_prime_UTR	19095069	19095132	.	+	.	Parent=Os11t0526200-01
Chr11	irgsp1_rep	mRNA	19112659	19116593	.	-	.	ID=Os11t0526800-01;Name=Os11t0526800-01;Locus_id=Os11g0526800;Oryzabase Gene Symbol Synonym(s)=Os_F0758;Note=Conserved hypothetical protein.;Transcript_evidence=AK068214 (DDBJ%2C Best hit);ORF_evidence=B9GAZ5 (UniProt);NIAS_FLcDNA=J013149B15;Oryzabase=17560;Expression=AK068214;TENOR=Os11t0526800-01;KEGG=Os11t0526800-01
Chr11	irgsp1_rep	five_prime_UTR	19116405	19116593	.	-	.	Parent=Os11t0526800-01
Chr11	irgsp1_rep	CDS	19116362	19116404	.	-	0	Parent=Os11t0526800-01
Chr11	irgsp1_rep	CDS	19115611	19115717	.	-	2	Parent=Os11t0526800-01
Chr11	irgsp1_rep	CDS	19114602	19115447	.	-	0	Parent=Os11t0526800-01
Chr11	irgsp1_rep	CDS	19113998	19114231	.	-	0	Parent=Os11t0526800-01
Chr11	irgsp1_rep	three_prime_UTR	19112659	19113997	.	-	.	Parent=Os11t0526800-01
Chr11	irgsp1_rep	mRNA	19118532	19126773	.	-	.	ID=Os11t0526900-01;Name=Os11t0526900-01;Locus_id=Os11g0526900;Note=Non-protein coding transcript.;Transcript_evidence=AK102583 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J033098D23;TENOR=Os11t0526900-01
Chr11	irgsp1_rep	exon	19126520	19126773	.	-	.	Parent=Os11t0526900-01
Chr11	irgsp1_rep	exon	19125551	19125641	.	-	.	Parent=Os11t0526900-01
Chr11	irgsp1_rep	exon	19124922	19125039	.	-	.	Parent=Os11t0526900-01
Chr11	irgsp1_rep	exon	19123312	19124262	.	-	.	Parent=Os11t0526900-01
Chr11	irgsp1_rep	exon	19123065	19123157	.	-	.	Parent=Os11t0526900-01
Chr11	irgsp1_rep	exon	19122191	19122622	.	-	.	Parent=Os11t0526900-01
Chr11	irgsp1_rep	exon	19121986	19122057	.	-	.	Parent=Os11t0526900-01
Chr11	irgsp1_rep	exon	19121718	19121818	.	-	.	Parent=Os11t0526900-01
Chr11	irgsp1_rep	exon	19120781	19121021	.	-	.	Parent=Os11t0526900-01
Chr11	irgsp1_rep	exon	19118532	19118925	.	-	.	Parent=Os11t0526900-01
Chr11	irgsp1_rep	mRNA	19126918	19128138	.	+	.	ID=Os11t0527000-01;Name=Os11t0527000-01;Locus_id=Os11g0527000;Note=Conserved hypothetical protein.;Transcript_evidence=AK241290 (DDBJ%2C Best hit);ORF_evidence=NP_001176568.1 (RefSeq);NIAS_FLcDNA=J065137N17;TENOR=Os11t0527000-01;KEGG=Os11t0527000-01
Chr11	irgsp1_rep	five_prime_UTR	19126918	19127210	.	+	.	Parent=Os11t0527000-01
Chr11	irgsp1_rep	CDS	19127211	19127891	.	+	0	Parent=Os11t0527000-01
Chr11	irgsp1_rep	three_prime_UTR	19127892	19128138	.	+	.	Parent=Os11t0527000-01
Chr11	irgsp1_rep	mRNA	19128154	19130382	.	-	.	ID=Os11t0527100-01;Name=Os11t0527100-01;Locus_id=Os11g0527100;Note=Conserved hypothetical protein.;Transcript_evidence=AK101702 (DDBJ%2C Best hit);ORF_evidence=B8BKU3 (UniProt);NIAS_FLcDNA=J033060F02;Expression=AK101702;TENOR=Os11t0527100-01;KEGG=Os11t0527100-01
Chr11	irgsp1_rep	five_prime_UTR	19129718	19130382	.	-	.	Parent=Os11t0527100-01
Chr11	irgsp1_rep	CDS	19129565	19129717	.	-	0	Parent=Os11t0527100-01
Chr11	irgsp1_rep	CDS	19128672	19128764	.	-	0	Parent=Os11t0527100-01
Chr11	irgsp1_rep	three_prime_UTR	19128627	19128671	.	-	.	Parent=Os11t0527100-01
Chr11	irgsp1_rep	three_prime_UTR	19128154	19128391	.	-	.	Parent=Os11t0527100-01
Chr11	irgsp1_rep	mRNA	19128430	19130356	.	+	.	ID=Os11t0527150-01;Name=Os11t0527150-01;Locus_id=Os11g0527150;Note=Hypothetical gene.;Transcript_evidence=AK288653 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090056O08;TENOR=Os11t0527150-01
Chr11	irgsp1_rep	five_prime_UTR	19128430	19130120	.	+	.	Parent=Os11t0527150-01
Chr11	irgsp1_rep	CDS	19130121	19130356	.	+	0	Parent=Os11t0527150-01
Chr11	irgsp1_rep	mRNA	19133073	19133593	.	+	.	ID=Os11t0527250-00;Name=Os11t0527250-00;Locus_id=Os11g0527250;Note=Non-protein coding transcript.;Transcript_evidence=CT835626 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os11t0527250-00
Chr11	irgsp1_rep	exon	19133073	19133593	.	+	.	Parent=Os11t0527250-00
Chr11	irgsp1_rep	mRNA	19134087	19137450	.	-	.	ID=Os11t0527300-01;Name=Os11t0527300-01;Locus_id=Os11g0527300;Note=FBD domain containing protein.;Transcript_evidence=AK070941 (DDBJ%2C Best hit);ORF_evidence=B9GAZ7 (UniProt);InterPro=FBD (IPR013596);NIAS_FLcDNA=J023067E11;Expression=AK070941;TENOR=Os11t0527300-01;KEGG=Os11t0527300-01
Chr11	irgsp1_rep	five_prime_UTR	19137361	19137450	.	-	.	Parent=Os11t0527300-01
Chr11	irgsp1_rep	CDS	19137312	19137360	.	-	0	Parent=Os11t0527300-01
Chr11	irgsp1_rep	CDS	19136706	19136830	.	-	2	Parent=Os11t0527300-01
Chr11	irgsp1_rep	CDS	19134993	19135151	.	-	0	Parent=Os11t0527300-01
Chr11	irgsp1_rep	CDS	19134330	19134782	.	-	0	Parent=Os11t0527300-01
Chr11	irgsp1_rep	three_prime_UTR	19134087	19134329	.	-	.	Parent=Os11t0527300-01
Chr11	irgsp1_rep	mRNA	19147400	19147560	.	+	.	ID=Os11t0527400-00;Name=Os11t0527400-00;Locus_id=Os11g0527400;Note=Non-protein coding transcript.;Transcript_evidence=EU945583 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0527400-00
Chr11	irgsp1_rep	exon	19147400	19147560	.	+	.	Parent=Os11t0527400-00
Chr11	irgsp1_rep	mRNA	19147963	19148639	.	+	.	ID=Os11t0527500-00;Name=Os11t0527500-00;Locus_id=Os11g0527500;Note=Hypothetical protein.;Transcript_evidence=EU950593 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0527500-00
Chr11	irgsp1_rep	five_prime_UTR	19147963	19147990	.	+	.	Parent=Os11t0527500-00
Chr11	irgsp1_rep	CDS	19147991	19148293	.	+	0	Parent=Os11t0527500-00
Chr11	irgsp1_rep	three_prime_UTR	19148294	19148639	.	+	.	Parent=Os11t0527500-00
Chr11	irgsp1_rep	mRNA	19156323	19157126	.	+	.	ID=Os11t0527700-00;Name=Os11t0527700-00;Locus_id=Os11g0527700;Note=Hypothetical conserved gene.;Transcript_evidence=AK335607 (DDBJ);ORF_evidence=Q25A32 (UniProt);TENOR=Os11t0527700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	19156323	19156979	.	+	0	Parent=Os11t0527700-00
Chr11	irgsp1_rep	three_prime_UTR	19156980	19157126	.	+	.	Parent=Os11t0527700-00
Chr11	irgsp1_rep	mRNA	19170791	19172631	.	+	.	ID=Os11t0528200-01;Name=Os11t0528200-01;Locus_id=Os11g0528200;CGSNL Gene Symbol=NEF1;CGSNL Gene Name=NO EXINE FORMATION 1;Oryzabase Gene Symbol Synonym(s)=Os NEF1%2C OsNEF1;Oryzabase Gene Name Synonym(s)=NO EXINE FORMATION1%2C no exine formation 1;Note=Similar to NEF1 (NO EXINE FORMATION 1).;Transcript_evidence=AK071810 (DDBJ%2C Best hit);ORF_evidence=NP_196843.1 (RefSeq);NIAS_FLcDNA=J023114H02;Oryzabase=18164;TENOR=Os11t0528200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	19170791	19170792	.	+	.	Parent=Os11t0528200-01
Chr11	irgsp1_rep	CDS	19170793	19171824	.	+	0	Parent=Os11t0528200-01
Chr11	irgsp1_rep	three_prime_UTR	19171825	19172631	.	+	.	Parent=Os11t0528200-01
Chr11	irgsp1_rep	mRNA	19172896	19174910	.	+	.	ID=Os11t0528300-01;Name=Os11t0528300-01;Locus_id=Os11g0528300;Note=Protein of unknown function DUF339 family protein.;Transcript_evidence=AK072911 (DDBJ%2C Best hit);ORF_evidence=B6SLM1 (UniProt);InterPro=Protein of unknown function DUF339 (IPR005631);NIAS_FLcDNA=J023150D09;Expression=AK072911;TENOR=Os11t0528300-01;KEGG=Os11t0528300-01
Chr11	irgsp1_rep	five_prime_UTR	19172896	19172945	.	+	.	Parent=Os11t0528300-01
Chr11	irgsp1_rep	CDS	19172946	19173166	.	+	0	Parent=Os11t0528300-01
Chr11	irgsp1_rep	CDS	19173270	19173396	.	+	1	Parent=Os11t0528300-01
Chr11	irgsp1_rep	CDS	19174386	19174454	.	+	0	Parent=Os11t0528300-01
Chr11	irgsp1_rep	CDS	19174543	19174686	.	+	0	Parent=Os11t0528300-01
Chr11	irgsp1_rep	three_prime_UTR	19174687	19174910	.	+	.	Parent=Os11t0528300-01
Chr11	irgsp1_rep	mRNA	19175188	19179728	.	-	.	ID=Os11t0528400-01;Name=Os11t0528400-01;Locus_id=Os11g0528400;Note=Similar to aminopeptidase.;Transcript_evidence=AK069554 (DDBJ%2C Best hit);ORF_evidence=NP_196898.5 (RefSeq);InterPro=Protein of unknown function DUF3754 (IPR022227);NIAS_FLcDNA=J023022D15;Expression=AK069554;TENOR=Os11t0528400-01;KEGG=Os11t0528400-01
Chr11	irgsp1_rep	five_prime_UTR	19179610	19179728	.	-	.	Parent=Os11t0528400-01
Chr11	irgsp1_rep	CDS	19179462	19179609	.	-	0	Parent=Os11t0528400-01
Chr11	irgsp1_rep	CDS	19178510	19178604	.	-	2	Parent=Os11t0528400-01
Chr11	irgsp1_rep	CDS	19178294	19178407	.	-	0	Parent=Os11t0528400-01
Chr11	irgsp1_rep	CDS	19178077	19178181	.	-	0	Parent=Os11t0528400-01
Chr11	irgsp1_rep	CDS	19177903	19177974	.	-	0	Parent=Os11t0528400-01
Chr11	irgsp1_rep	CDS	19177578	19177690	.	-	0	Parent=Os11t0528400-01
Chr11	irgsp1_rep	CDS	19177346	19177480	.	-	1	Parent=Os11t0528400-01
Chr11	irgsp1_rep	CDS	19177191	19177259	.	-	1	Parent=Os11t0528400-01
Chr11	irgsp1_rep	CDS	19176992	19177079	.	-	1	Parent=Os11t0528400-01
Chr11	irgsp1_rep	CDS	19176814	19176885	.	-	0	Parent=Os11t0528400-01
Chr11	irgsp1_rep	CDS	19176634	19176734	.	-	0	Parent=Os11t0528400-01
Chr11	irgsp1_rep	CDS	19176382	19176499	.	-	1	Parent=Os11t0528400-01
Chr11	irgsp1_rep	CDS	19176241	19176300	.	-	0	Parent=Os11t0528400-01
Chr11	irgsp1_rep	CDS	19175763	19175873	.	-	0	Parent=Os11t0528400-01
Chr11	irgsp1_rep	CDS	19175428	19175538	.	-	0	Parent=Os11t0528400-01
Chr11	irgsp1_rep	three_prime_UTR	19175188	19175427	.	-	.	Parent=Os11t0528400-01
Chr11	irgsp1_rep	mRNA	19180636	19182258	.	-	.	ID=Os11t0528500-01;Name=Os11t0528500-01;Locus_id=Os11g0528500;Note=Similar to Rubredoxin 1 (Rd-1).;Transcript_evidence=AK058434 (DDBJ%2C Best hit);ORF_evidence=E6NU05 (UniProt);GO=Molecular Function: electron carrier activity (GO:0009055),Molecular Function: metal ion binding (GO:0046872);InterPro=Rubredoxin-type Fe(Cys)4 protein (IPR004039);NIAS_FLcDNA=001-015-F04;Expression=AK058434;TENOR=Os11t0528500-01;KEGG=Os11t0528500-01
Chr11	irgsp1_rep	five_prime_UTR	19182129	19182258	.	-	.	Parent=Os11t0528500-01
Chr11	irgsp1_rep	CDS	19181929	19182128	.	-	0	Parent=Os11t0528500-01
Chr11	irgsp1_rep	CDS	19181743	19181801	.	-	1	Parent=Os11t0528500-01
Chr11	irgsp1_rep	CDS	19181191	19181308	.	-	2	Parent=Os11t0528500-01
Chr11	irgsp1_rep	CDS	19180887	19180965	.	-	1	Parent=Os11t0528500-01
Chr11	irgsp1_rep	three_prime_UTR	19180636	19180886	.	-	.	Parent=Os11t0528500-01
Chr11	irgsp1_rep	mRNA	19184337	19190125	.	-	.	ID=Os11t0528700-01;Name=Os11t0528700-01;Locus_id=Os11g0528700;RAP-DB Gene Symbol Synonym(s)=GH3-13%2C OsGH3-13%2C TLD1/OsGH3.13%2C TLD1%2C OsGH3.13%2C TLD2;RAP-DB Gene Name Synonym(s)=GH3-13%2C increased number of tillers%2C enlarged leaf angles%2C and dwarfism 1;CGSNL Gene Symbol=TLD1;CGSNL Gene Name=INCREASED NUMBER OF TILLERS%2C ENLARGED LEAF ANGLES AND DWARFISM 1;Oryzabase Gene Symbol Synonym(s)=OsGH3-13%2C GH3-13%2C TLD1/OsGH3.13%2C TLD1%2C OsGH3.13%2C TLD2;Oryzabase Gene Name Synonym(s)=increased number of tillers%2C enlarged leaf angles%2C and dwarfism 1;Note=Indole-3-acetic acid (IAA)-amido synthetase%2C Plant architecture establishment%2C Drought tolerance;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;InterPro=GH3 auxin-responsive promoter (IPR004993);Manual Curation=January 21%2C 2010;Literature_PMID=19776160;Oryzabase=11630;TENOR=Os11t0528700-00
Chr11	irgsp1_rep	CDS	19189710	19190125	.	-	0	Parent=Os11t0528700-01
Chr11	irgsp1_rep	CDS	19189516	19189617	.	-	1	Parent=Os11t0528700-01
Chr11	irgsp1_rep	CDS	19188651	19189456	.	-	1	Parent=Os11t0528700-01
Chr11	irgsp1_rep	CDS	19184337	19185001	.	-	2	Parent=Os11t0528700-01
Chr11	irgsp1_rep	mRNA	19188565	19190125	.	-	.	ID=Os11t0528700-02;Name=Os11t0528700-02;Locus_id=Os11g0528700;RAP-DB Gene Symbol Synonym(s)=TLD2;RAP-DB Gene Name Synonym(s)=Increased number of tillers%2C enlarged leaf angles%2C and dwarfism;CGSNL Gene Symbol=TLD1;CGSNL Gene Name=INCREASED NUMBER OF TILLERS%2C ENLARGED LEAF ANGLES AND DWARFISM 1;Oryzabase Gene Symbol Synonym(s)=OsGH3-13%2C GH3-13%2C TLD1/OsGH3.13%2C TLD1%2C OsGH3.13%2C TLD2;Oryzabase Gene Name Synonym(s)=increased number of tillers%2C enlarged leaf angles%2C and dwarfism 1;Note=Indole-3-acetic acid (IAA)-amido synthetase;Transcript_evidence=Inferred from literature;ORF_evidence=Q2R3B4 (UniProt);InterPro=GH3 auxin-responsive promoter (IPR004993);Manual Curation=January 21%2C 2010;Literature_PMID=19776160;Oryzabase=11630
Chr11	irgsp1_rep	CDS	19189710	19190125	.	-	0	Parent=Os11t0528700-02
Chr11	irgsp1_rep	CDS	19189516	19189617	.	-	1	Parent=Os11t0528700-02
Chr11	irgsp1_rep	CDS	19188565	19189456	.	-	1	Parent=Os11t0528700-02
Chr11	irgsp1_rep	mRNA	19184373	19190065	.	+	.	ID=Os11t0528812-00;Name=Os11t0528812-00;Locus_id=Os11g0528812;Note=Hypothetical protein.;Transcript_evidence=tplb0045h20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0528812-00
Chr11	irgsp1_rep	five_prime_UTR	19184373	19184711	.	+	.	Parent=Os11t0528812-00
Chr11	irgsp1_rep	CDS	19184712	19185006	.	+	0	Parent=Os11t0528812-00
Chr11	irgsp1_rep	CDS	19188656	19189452	.	+	2	Parent=Os11t0528812-00
Chr11	irgsp1_rep	CDS	19189510	19189545	.	+	0	Parent=Os11t0528812-00
Chr11	irgsp1_rep	three_prime_UTR	19189546	19189608	.	+	.	Parent=Os11t0528812-00
Chr11	irgsp1_rep	three_prime_UTR	19189699	19190065	.	+	.	Parent=Os11t0528812-00
Chr11	irgsp1_rep	mRNA	19195013	19195778	.	-	.	ID=Os11t0528924-00;Name=Os11t0528924-00;Locus_id=Os11g0528924;Note=Non-protein coding transcript.;Transcript_evidence=BT070086 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0528924-00
Chr11	irgsp1_rep	exon	19195013	19195778	.	-	.	Parent=Os11t0528924-00
Chr11	irgsp1_rep	mRNA	19207697	19208029	.	-	.	ID=Os11t0529036-00;Name=Os11t0529036-00;Locus_id=Os11g0529036;CGSNL Gene Symbol=PKS22;CGSNL Gene Name=POLYKETIDE SYNTHASE 22;Oryzabase Gene Symbol Synonym(s)=OsPKS22%2C OsCHS28%2C CHS28;Oryzabase Gene Name Synonym(s)=polyketide synthase 22%2C Chalcone synthase 28;Note=Similar to Chalcone and stilbene synthases%2C N-terminal domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R3B2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Chalcone/stilbene synthase%2C C-terminal (IPR012328),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);Oryzabase=21569;TENOR=Os11t0529036-00
Chr11	irgsp1_rep	CDS	19207697	19208029	.	-	0	Parent=Os11t0529036-00
Chr11	irgsp1_rep	mRNA	19208418	19211842	.	-	.	ID=Os11t0529100-00;Name=Os11t0529100-00;Locus_id=Os11g0529100;Note=Similar to Chalcone and stilbene synthases%2C N-terminal domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q7G630 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Chalcone/stilbene synthase%2C N-terminal (IPR001099),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);TENOR=Os11t0529100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	19211719	19211842	.	-	0	Parent=Os11t0529100-00
Chr11	irgsp1_rep	CDS	19208418	19208647	.	-	2	Parent=Os11t0529100-00
Chr11	irgsp1_rep	mRNA	19208135	19208365	.	-	.	ID=Os11t0529125-00;Name=Os11t0529125-00;Locus_id=Os11g0529125;CGSNL Gene Symbol=PKS22;CGSNL Gene Name=POLYKETIDE SYNTHASE 22;Oryzabase Gene Symbol Synonym(s)=OsPKS22%2C OsCHS28%2C CHS28;Oryzabase Gene Name Synonym(s)=polyketide synthase 22%2C Chalcone synthase 28;Note=Similar to Chalcone and stilbene synthases%2C N-terminal domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R3B2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Chalcone/stilbene synthase%2C N-terminal (IPR001099),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);Oryzabase=21569;TENOR=Os11t0529125-00
Chr11	irgsp1_rep	CDS	19208135	19208365	.	-	0	Parent=Os11t0529125-00
Chr11	irgsp1_rep	mRNA	19207714	19208650	.	+	.	ID=Os11t0529150-00;Name=Os11t0529150-00;Locus_id=Os11g0529150;Note=Hypothetical gene.;Transcript_evidence=EU966441 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0529150-00;KEGG=Os11t0529150-00
Chr11	irgsp1_rep	five_prime_UTR	19207714	19207858	.	+	.	Parent=Os11t0529150-00
Chr11	irgsp1_rep	CDS	19207859	19208383	.	+	0	Parent=Os11t0529150-00
Chr11	irgsp1_rep	three_prime_UTR	19208384	19208650	.	+	.	Parent=Os11t0529150-00
Chr11	irgsp1_rep	mRNA	19226962	19228479	.	-	.	ID=Os11t0529500-00;Name=Os11t0529500-00;Locus_id=Os11g0529500;CGSNL Gene Symbol=PKS23;CGSNL Gene Name=POLYKETIDE SYNTHASE 23;Oryzabase Gene Symbol Synonym(s)=OsPKS23%2C OsCHS29%2C CHS29;Oryzabase Gene Name Synonym(s)=polyketide synthase 23%2C Chalcone synthase 29;Note=Polyketide synthase%2C type III domain containing protein.;Transcript_evidence=tplb0040n05 (Wheat FLcDNA);ORF_evidence=NP_001068006.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Chalcone/stilbene synthase%2C N-terminal (IPR001099),Polyketide synthase%2C type III (IPR011141),Chalcone/stilbene synthase%2C C-terminal (IPR012328),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);Oryzabase=21570;TENOR=Os11t0529500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	19228427	19228479	.	-	.	Parent=Os11t0529500-00
Chr11	irgsp1_rep	CDS	19228261	19228426	.	-	0	Parent=Os11t0529500-00
Chr11	irgsp1_rep	CDS	19226962	19228037	.	-	2	Parent=Os11t0529500-00
Chr11	irgsp1_rep	mRNA	19227132	19228103	.	+	.	ID=Os11t0529550-00;Name=Os11t0529550-00;Locus_id=Os11g0529550;Note=Hypothetical gene.;Transcript_evidence=EU966441 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0529550-00;KEGG=Os11t0529550-00
Chr11	irgsp1_rep	five_prime_UTR	19227132	19227460	.	+	.	Parent=Os11t0529550-00
Chr11	irgsp1_rep	CDS	19227461	19227739	.	+	0	Parent=Os11t0529550-00
Chr11	irgsp1_rep	three_prime_UTR	19227740	19228103	.	+	.	Parent=Os11t0529550-00
Chr11	irgsp1_rep	mRNA	19236424	19238358	.	+	.	ID=Os11t0529800-00;Name=Os11t0529800-00;Locus_id=Os11g0529800;CGSNL Gene Symbol=PKS24;CGSNL Gene Name=POLYKETIDE SYNTHASE 24;Oryzabase Gene Symbol Synonym(s)=OsPKS24%2C OsCHS30%2C CHS30;Oryzabase Gene Name Synonym(s)=polyketide synthase 24%2C Chalcone synthase 30;Note=Similar to Chalcone synthase.;Transcript_evidence=ab initio prediction;ORF_evidence=E3VQ33 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Chalcone/stilbene synthase%2C N-terminal (IPR001099),Polyketide synthase%2C type III (IPR011141),Chalcone/stilbene synthase%2C C-terminal (IPR012328),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);Oryzabase=21571;TENOR=Os11t0529800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	19236424	19236577	.	+	0	Parent=Os11t0529800-00
Chr11	irgsp1_rep	CDS	19237307	19238358	.	+	2	Parent=Os11t0529800-00
Chr11	irgsp1_rep	mRNA	19237300	19238194	.	-	.	ID=Os11t0529833-00;Name=Os11t0529833-00;Locus_id=Os11g0529833;Note=Non-protein coding transcript.;Transcript_evidence=BT063109 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0529833-00
Chr11	irgsp1_rep	exon	19237300	19238194	.	-	.	Parent=Os11t0529833-00
Chr11	irgsp1_rep	mRNA	19243245	19244840	.	-	.	ID=Os11t0529900-00;Name=Os11t0529900-00;Locus_id=Os11g0529900;CGSNL Gene Symbol=PKS25;CGSNL Gene Name=POLYKETIDE SYNTHASE 25;Oryzabase Gene Symbol Synonym(s)=OsPKS25%2C OsCHS23%2C CHS23;Oryzabase Gene Name Synonym(s)=polyketide synthase 25%2C Chalcone synthase 23;Note=Chalcone/stilbene synthase%2C N-terminal domain containing protein.;Transcript_evidence=AK363645 (DDBJ);ORF_evidence=NP_001068008.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Chalcone/stilbene synthase%2C N-terminal (IPR001099),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);Oryzabase=21572;TENOR=Os11t0529900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	19244623	19244840	.	-	0	Parent=Os11t0529900-00
Chr11	irgsp1_rep	CDS	19243245	19244364	.	-	1	Parent=Os11t0529900-00
Chr11	irgsp1_rep	mRNA	19277597	19281006	.	-	.	ID=Os11t0530600-01;Name=Os11t0530600-01;Locus_id=Os11g0530600;RAP-DB Gene Symbol Synonym(s)=OsCHS1%2C OsCHS24;RAP-DB Gene Name Synonym(s)=chalcone synthase 1%2C chalcone synthase 24;CGSNL Gene Symbol=CHS;CGSNL Gene Name=CHALCONE SYNTHASE;Oryzabase Gene Symbol Synonym(s)=CHS*%2C Oschs%2C chs%2C chas%2C OsCHS%2C OsCHS1%2C CHS1%2C OsPKS26%2C PKS26%2C OsCHS24%2C CHS24;Oryzabase Gene Name Synonym(s)=Chalcone synthase%2C Naregenin-chalcone synthase%2C chalcone synthase%2C chalcone synthase 1%2C polyketide synthase 26%2C Chalcone synthase 24;Note=Chalcone synthase%2C Sakuranetin biosynthesis under UV stress conditions;Transcript_evidence=AK067810;ORF_evidence=Q2R3A1;GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Thiolase-like (IPR016039),Polyketide synthase%2C type III (IPR011141),Chalcone/stilbene synthase%2C N-terminal (IPR001099),Chalcone/stilbene synthase%2C C-terminal (IPR012328),Chalcone/stilbene synthase%2C active site (IPR018088);NIAS_FLcDNA=J013119K06;Manual Curation=June 1%2C 2020;Literature_PMID=32471084,18726614;Oryzabase=889;Expression=AK067810;TENOR=Os11t0530600-01;KEGG=Os11t0530600-01 (EC:2.3.1.74)
Chr11	irgsp1_rep	five_prime_UTR	19280838	19281006	.	-	.	Parent=Os11t0530600-01
Chr11	irgsp1_rep	CDS	19280651	19280837	.	-	0	Parent=Os11t0530600-01
Chr11	irgsp1_rep	CDS	19277986	19278995	.	-	2	Parent=Os11t0530600-01
Chr11	irgsp1_rep	three_prime_UTR	19277597	19277985	.	-	.	Parent=Os11t0530600-01
Chr11	irgsp1_rep	mRNA	19278125	19278998	.	+	.	ID=Os11t0530650-00;Name=Os11t0530650-00;Locus_id=Os11g0530650;Note=Hypothetical protein.;Transcript_evidence=BT063109 (DDBJ);ORF_evidence=longestORF;Oryzabase=23285;TENOR=Os11t0530650-00
Chr11	irgsp1_rep	five_prime_UTR	19278125	19278126	.	+	.	Parent=Os11t0530650-00
Chr11	irgsp1_rep	CDS	19278127	19278998	.	+	0	Parent=Os11t0530650-00
Chr11	irgsp1_rep	mRNA	19279230	19279733	.	-	.	ID=Os11t0530700-01;Name=Os11t0530700-01;Locus_id=Os11g0530700;Note=Non-protein coding transcript.;Transcript_evidence=AK105202 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-108-C07;TENOR=Os11t0530700-01
Chr11	irgsp1_rep	exon	19279230	19279733	.	-	.	Parent=Os11t0530700-01
Chr11	irgsp1_rep	mRNA	19331072	19335359	.	+	.	ID=Os11t0531300-01;Name=Os11t0531300-01;Locus_id=Os11g0531300;Note=Similar to Universal minicircle sequence binding protein.;Transcript_evidence=AK105999 (DDBJ%2C Best hit),AK105736 (DDBJ%2C Best hit);ORF_evidence=B8BKV6 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Zinc finger%2C CCHC retroviral-type (IPR013084);NIAS_FLcDNA=001-205-H10,001-201-H12;TENOR=Os11t0531300-01
Chr11	irgsp1_rep	five_prime_UTR	19331072	19331173	.	+	.	Parent=Os11t0531300-01
Chr11	irgsp1_rep	CDS	19331174	19331536	.	+	0	Parent=Os11t0531300-01
Chr11	irgsp1_rep	CDS	19333203	19333667	.	+	0	Parent=Os11t0531300-01
Chr11	irgsp1_rep	CDS	19334471	19334980	.	+	0	Parent=Os11t0531300-01
Chr11	irgsp1_rep	three_prime_UTR	19334981	19335359	.	+	.	Parent=Os11t0531300-01
Chr11	irgsp1_rep	mRNA	19353108	19355768	.	+	.	ID=Os11t0531700-01;Name=Os11t0531700-01;Locus_id=Os11g0531700;Note=NUDIX hydrolase domain containing protein.;Transcript_evidence=AK059751 (DDBJ%2C Best hit);ORF_evidence=B7ENP9 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=NUDIX hydrolase domain (IPR000086),NUDIX hydrolase domain-like (IPR015797),NUDIX hydrolase%2C conserved site (IPR020084);NIAS_FLcDNA=006-203-B03;Expression=AK059751;TENOR=Os11t0531700-01;KEGG=Os11t0531700-01
Chr11	irgsp1_rep	five_prime_UTR	19353108	19353127	.	+	.	Parent=Os11t0531700-01
Chr11	irgsp1_rep	CDS	19353128	19353169	.	+	0	Parent=Os11t0531700-01
Chr11	irgsp1_rep	CDS	19353308	19353447	.	+	0	Parent=Os11t0531700-01
Chr11	irgsp1_rep	CDS	19353727	19353859	.	+	1	Parent=Os11t0531700-01
Chr11	irgsp1_rep	CDS	19354076	19354159	.	+	0	Parent=Os11t0531700-01
Chr11	irgsp1_rep	CDS	19354968	19355117	.	+	0	Parent=Os11t0531700-01
Chr11	irgsp1_rep	CDS	19355242	19355433	.	+	0	Parent=Os11t0531700-01
Chr11	irgsp1_rep	three_prime_UTR	19355434	19355768	.	+	.	Parent=Os11t0531700-01
Chr11	irgsp1_rep	mRNA	19353344	19355709	.	+	.	ID=Os11t0531700-02;Name=Os11t0531700-02;Locus_id=Os11g0531700;Note=Similar to nudix hydrolase 13.;Transcript_evidence=AK099204 (DDBJ%2C Best hit);ORF_evidence=NP_001151121.1 (RefSeq);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=NUDIX hydrolase domain (IPR000086),NUDIX hydrolase domain-like (IPR015797),NUDIX hydrolase%2C conserved site (IPR020084);NIAS_FLcDNA=J023124F03;Expression=AK099204;TENOR=Os11t0531700-02;KEGG=Os11t0531700-02
Chr11	irgsp1_rep	five_prime_UTR	19353344	19353352	.	+	.	Parent=Os11t0531700-02
Chr11	irgsp1_rep	CDS	19353353	19353447	.	+	0	Parent=Os11t0531700-02
Chr11	irgsp1_rep	CDS	19353727	19353859	.	+	1	Parent=Os11t0531700-02
Chr11	irgsp1_rep	CDS	19354076	19354159	.	+	0	Parent=Os11t0531700-02
Chr11	irgsp1_rep	CDS	19354968	19355117	.	+	0	Parent=Os11t0531700-02
Chr11	irgsp1_rep	CDS	19355242	19355433	.	+	0	Parent=Os11t0531700-02
Chr11	irgsp1_rep	three_prime_UTR	19355434	19355709	.	+	.	Parent=Os11t0531700-02
Chr11	irgsp1_rep	mRNA	19354777	19356799	.	-	.	ID=Os11t0531800-01;Name=Os11t0531800-01;Locus_id=Os11g0531800;Note=Hypothetical protein.;Transcript_evidence=AK058678 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-018-H10;Expression=AK058678;TENOR=Os11t0531800-01;KEGG=Os11t0531800-01
Chr11	irgsp1_rep	five_prime_UTR	19355589	19356799	.	-	.	Parent=Os11t0531800-01
Chr11	irgsp1_rep	CDS	19355238	19355588	.	-	0	Parent=Os11t0531800-01
Chr11	irgsp1_rep	three_prime_UTR	19354777	19355237	.	-	.	Parent=Os11t0531800-01
Chr11	irgsp1_rep	mRNA	19356980	19358116	.	-	.	ID=Os11t0532000-01;Name=Os11t0532000-01;Locus_id=Os11g0532000;Note=Conserved hypothetical protein.;Transcript_evidence=AK064658 (DDBJ%2C Best hit);ORF_evidence=A2ZEY5 (UniProt);NIAS_FLcDNA=002-114-G06;Expression=AK064658;TENOR=Os11t0532000-01;KEGG=Os11t0532000-01
Chr11	irgsp1_rep	five_prime_UTR	19358008	19358116	.	-	.	Parent=Os11t0532000-01
Chr11	irgsp1_rep	CDS	19357309	19358007	.	-	0	Parent=Os11t0532000-01
Chr11	irgsp1_rep	three_prime_UTR	19356980	19357308	.	-	.	Parent=Os11t0532000-01
Chr11	irgsp1_rep	mRNA	19362542	19366130	.	+	.	ID=Os11t0532200-01;Name=Os11t0532200-01;Locus_id=Os11g0532200;Note=Hypothetical protein.;Transcript_evidence=AK121834 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J033100C02;TENOR=Os11t0532200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	19362542	19362685	.	+	0	Parent=Os11t0532200-01
Chr11	irgsp1_rep	CDS	19363844	19363957	.	+	0	Parent=Os11t0532200-01
Chr11	irgsp1_rep	CDS	19365276	19365311	.	+	0	Parent=Os11t0532200-01
Chr11	irgsp1_rep	three_prime_UTR	19365312	19366130	.	+	.	Parent=Os11t0532200-01
Chr11	irgsp1_rep	mRNA	19385813	19388767	.	+	.	ID=Os11t0532600-01;Name=Os11t0532600-01;Locus_id=Os11g0532600;Oryzabase Gene Symbol Synonym(s)=OsFbox601%2C Os_F0719;Oryzabase Gene Name Synonym(s)=F-box protein 601;Note=Conserved hypothetical protein.;Transcript_evidence=AK060253 (DDBJ%2C Best hit);ORF_evidence=A3CBX6 (UniProt);NIAS_FLcDNA=001-004-D08;Oryzabase=17364;TENOR=Os11t0532600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	19385813	19385813	.	+	.	Parent=Os11t0532600-01
Chr11	irgsp1_rep	CDS	19385814	19385852	.	+	0	Parent=Os11t0532600-01
Chr11	irgsp1_rep	CDS	19385955	19386812	.	+	0	Parent=Os11t0532600-01
Chr11	irgsp1_rep	CDS	19386892	19387041	.	+	0	Parent=Os11t0532600-01
Chr11	irgsp1_rep	CDS	19388171	19388491	.	+	0	Parent=Os11t0532600-01
Chr11	irgsp1_rep	three_prime_UTR	19388492	19388767	.	+	.	Parent=Os11t0532600-01
Chr11	irgsp1_rep	mRNA	19390085	19390976	.	-	.	ID=Os11t0532751-00;Name=Os11t0532751-00;Locus_id=Os11g0532751;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R384 (UniProt);TENOR=Os11t0532751-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	19390681	19390976	.	-	0	Parent=Os11t0532751-00
Chr11	irgsp1_rep	CDS	19390085	19390322	.	-	1	Parent=Os11t0532751-00
Chr11	irgsp1_rep	mRNA	19412334	19413470	.	+	.	ID=Os11t0532900-01;Name=Os11t0532900-01;Locus_id=Os11g0532900;Note=Conserved hypothetical protein.;Transcript_evidence=AK064658 (DDBJ%2C Best hit);ORF_evidence=A2ZEY5 (UniProt);NIAS_FLcDNA=002-114-G06;Expression=AK064658;TENOR=Os11t0532900-01;KEGG=Os11t0532900-01
Chr11	irgsp1_rep	five_prime_UTR	19412334	19412442	.	+	.	Parent=Os11t0532900-01
Chr11	irgsp1_rep	CDS	19412443	19413141	.	+	0	Parent=Os11t0532900-01
Chr11	irgsp1_rep	three_prime_UTR	19413142	19413470	.	+	.	Parent=Os11t0532900-01
Chr11	irgsp1_rep	mRNA	19414910	19420228	.	+	.	ID=Os11t0533000-00;Name=Os11t0533000-00;Locus_id=Os11g0533000;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os11t0533000-00
Chr11	irgsp1_rep	CDS	19414910	19415122	.	+	0	Parent=Os11t0533000-00
Chr11	irgsp1_rep	CDS	19419809	19419882	.	+	0	Parent=Os11t0533000-00
Chr11	irgsp1_rep	CDS	19420135	19420228	.	+	1	Parent=Os11t0533000-00
Chr11	irgsp1_rep	mRNA	19421487	19429665	.	-	.	ID=Os11t0533100-01;Name=Os11t0533100-01;Locus_id=Os11g0533100;Note=Similar to CarD-like transcriptional regulator family protein%2C expressed.;Transcript_evidence=AK120240 (DDBJ%2C Best hit);ORF_evidence=Q2R377 (UniProt);NIAS_FLcDNA=J013044D20;TENOR=Os11t0533100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	19429591	19429665	.	-	.	Parent=Os11t0533100-01
Chr11	irgsp1_rep	CDS	19428962	19429590	.	-	0	Parent=Os11t0533100-01
Chr11	irgsp1_rep	CDS	19428647	19428695	.	-	1	Parent=Os11t0533100-01
Chr11	irgsp1_rep	three_prime_UTR	19428453	19428646	.	-	.	Parent=Os11t0533100-01
Chr11	irgsp1_rep	three_prime_UTR	19427992	19428237	.	-	.	Parent=Os11t0533100-01
Chr11	irgsp1_rep	three_prime_UTR	19427252	19427386	.	-	.	Parent=Os11t0533100-01
Chr11	irgsp1_rep	three_prime_UTR	19426751	19426875	.	-	.	Parent=Os11t0533100-01
Chr11	irgsp1_rep	three_prime_UTR	19426219	19426358	.	-	.	Parent=Os11t0533100-01
Chr11	irgsp1_rep	three_prime_UTR	19425868	19425938	.	-	.	Parent=Os11t0533100-01
Chr11	irgsp1_rep	three_prime_UTR	19425272	19425433	.	-	.	Parent=Os11t0533100-01
Chr11	irgsp1_rep	three_prime_UTR	19424724	19424810	.	-	.	Parent=Os11t0533100-01
Chr11	irgsp1_rep	three_prime_UTR	19424010	19424183	.	-	.	Parent=Os11t0533100-01
Chr11	irgsp1_rep	three_prime_UTR	19423262	19423306	.	-	.	Parent=Os11t0533100-01
Chr11	irgsp1_rep	three_prime_UTR	19422976	19423146	.	-	.	Parent=Os11t0533100-01
Chr11	irgsp1_rep	three_prime_UTR	19422692	19422877	.	-	.	Parent=Os11t0533100-01
Chr11	irgsp1_rep	three_prime_UTR	19422029	19422313	.	-	.	Parent=Os11t0533100-01
Chr11	irgsp1_rep	three_prime_UTR	19421487	19421934	.	-	.	Parent=Os11t0533100-01
Chr11	irgsp1_rep	mRNA	19430389	19431158	.	-	.	ID=Os11t0533400-01;Name=Os11t0533400-01;Locus_id=Os11g0533400;Note=Conserved hypothetical protein.;Transcript_evidence=AK063652 (DDBJ%2C Best hit);ORF_evidence=B8BKV9 (UniProt);NIAS_FLcDNA=001-119-B03;Oryzabase=23576;Expression=AK063652;TENOR=Os11t0533400-01;KEGG=Os11t0533400-01
Chr11	irgsp1_rep	five_prime_UTR	19431079	19431158	.	-	.	Parent=Os11t0533400-01
Chr11	irgsp1_rep	CDS	19430575	19431078	.	-	0	Parent=Os11t0533400-01
Chr11	irgsp1_rep	three_prime_UTR	19430389	19430574	.	-	.	Parent=Os11t0533400-01
Chr11	irgsp1_rep	mRNA	19433456	19439870	.	+	.	ID=Os11t0533500-01;Name=Os11t0533500-01;Locus_id=Os11g0533500;RAP-DB Gene Symbol Synonym(s)=OsRBR2;RAP-DB Gene Name Synonym(s)=RETINOBLASTOMA-RELATED 2;Oryzabase Gene Symbol Synonym(s)=Orysa%3BRb1%2C RBR1%2C OsRBR2;Oryzabase Gene Name Synonym(s)=retinoblastoma protein homolog 1%2C etinoblastoma-related 1%2C retinoblastoma-related protein-2;Note=Retinoblastoma-related protein%2C Control of pollen development;Transcript_evidence=AK121431;ORF_evidence=Q2R374;GO=Biological Process: regulation of cell cycle (GO:0051726),Cellular Component: nucleus (GO:0005634);InterPro=Cyclin-like superfamily (IPR036915),Retinoblastoma-associated protein%2C N-terminal (IPR024599),Retinoblastoma-associated protein%2C A-box (IPR002720),Retinoblastoma-associated protein%2C B-box (IPR002719),Retinoblastoma-associated protein%2C C-terminal (IPR015030);NIAS_FLcDNA=J023138G19;Manual Curation=September 24%2C 2019;Literature_PMID=31548267,17389586;Oryzabase=13319;Expression=AK121431;TENOR=Os11t0533500-01;KEGG=Os11t0533500-01;Subcellular location=nucleus (GO:0005634)
Chr11	irgsp1_rep	five_prime_UTR	19433456	19433624	.	+	.	Parent=Os11t0533500-01
Chr11	irgsp1_rep	CDS	19433625	19433678	.	+	0	Parent=Os11t0533500-01
Chr11	irgsp1_rep	CDS	19433765	19433863	.	+	0	Parent=Os11t0533500-01
Chr11	irgsp1_rep	CDS	19433941	19434062	.	+	0	Parent=Os11t0533500-01
Chr11	irgsp1_rep	CDS	19434172	19434268	.	+	1	Parent=Os11t0533500-01
Chr11	irgsp1_rep	CDS	19434373	19434419	.	+	0	Parent=Os11t0533500-01
Chr11	irgsp1_rep	CDS	19434615	19434798	.	+	1	Parent=Os11t0533500-01
Chr11	irgsp1_rep	CDS	19434944	19435010	.	+	0	Parent=Os11t0533500-01
Chr11	irgsp1_rep	CDS	19435110	19435287	.	+	2	Parent=Os11t0533500-01
Chr11	irgsp1_rep	CDS	19435388	19435580	.	+	1	Parent=Os11t0533500-01
Chr11	irgsp1_rep	CDS	19435667	19436534	.	+	0	Parent=Os11t0533500-01
Chr11	irgsp1_rep	CDS	19437461	19437617	.	+	2	Parent=Os11t0533500-01
Chr11	irgsp1_rep	CDS	19437729	19437801	.	+	1	Parent=Os11t0533500-01
Chr11	irgsp1_rep	CDS	19437887	19438060	.	+	0	Parent=Os11t0533500-01
Chr11	irgsp1_rep	CDS	19438475	19438588	.	+	0	Parent=Os11t0533500-01
Chr11	irgsp1_rep	CDS	19438705	19438831	.	+	0	Parent=Os11t0533500-01
Chr11	irgsp1_rep	CDS	19438926	19439038	.	+	2	Parent=Os11t0533500-01
Chr11	irgsp1_rep	CDS	19439209	19439324	.	+	0	Parent=Os11t0533500-01
Chr11	irgsp1_rep	CDS	19439442	19439595	.	+	1	Parent=Os11t0533500-01
Chr11	irgsp1_rep	three_prime_UTR	19439596	19439870	.	+	.	Parent=Os11t0533500-01
Chr11	irgsp1_rep	mRNA	19433495	19439851	.	+	.	ID=Os11t0533500-02;Name=Os11t0533500-02;Locus_id=Os11g0533500;Oryzabase Gene Symbol Synonym(s)=Orysa%3BRb1%2C RBR1%2C OsRBR2;Oryzabase Gene Name Synonym(s)=retinoblastoma protein homolog 1%2C etinoblastoma-related 1%2C retinoblastoma-related protein-2;Note=Similar to Retinoblastoma-related protein 2b (Fragment).;Transcript_evidence=AK064987 (DDBJ%2C Best hit);ORF_evidence=Q2R374 (UniProt);GO=Biological Process: regulation of cell cycle (GO:0051726),Cellular Component: nucleus (GO:0005634);InterPro=Retinoblastoma-associated protein%2C B-box (IPR002719),Retinoblastoma-associated protein%2C A-box (IPR002720),Cyclin-like (IPR013763),Domain of unknown function DUF3452%2C retinoblastoma-associated (IPR024599);NIAS_FLcDNA=J013001D03;Oryzabase=13319;Expression=AK064987;TENOR=Os11t0533500-02;KEGG=Os11t0533500-02
Chr11	irgsp1_rep	five_prime_UTR	19433495	19433624	.	+	.	Parent=Os11t0533500-02
Chr11	irgsp1_rep	CDS	19433625	19433678	.	+	0	Parent=Os11t0533500-02
Chr11	irgsp1_rep	CDS	19433765	19433863	.	+	0	Parent=Os11t0533500-02
Chr11	irgsp1_rep	CDS	19433941	19434062	.	+	0	Parent=Os11t0533500-02
Chr11	irgsp1_rep	CDS	19434172	19434268	.	+	1	Parent=Os11t0533500-02
Chr11	irgsp1_rep	CDS	19434373	19434419	.	+	0	Parent=Os11t0533500-02
Chr11	irgsp1_rep	CDS	19434615	19434798	.	+	1	Parent=Os11t0533500-02
Chr11	irgsp1_rep	CDS	19434944	19435010	.	+	0	Parent=Os11t0533500-02
Chr11	irgsp1_rep	CDS	19435110	19435287	.	+	2	Parent=Os11t0533500-02
Chr11	irgsp1_rep	CDS	19435388	19435580	.	+	1	Parent=Os11t0533500-02
Chr11	irgsp1_rep	CDS	19435667	19436534	.	+	0	Parent=Os11t0533500-02
Chr11	irgsp1_rep	CDS	19437461	19437617	.	+	2	Parent=Os11t0533500-02
Chr11	irgsp1_rep	CDS	19437729	19437801	.	+	1	Parent=Os11t0533500-02
Chr11	irgsp1_rep	CDS	19437887	19438060	.	+	0	Parent=Os11t0533500-02
Chr11	irgsp1_rep	CDS	19438475	19438588	.	+	0	Parent=Os11t0533500-02
Chr11	irgsp1_rep	CDS	19438705	19438831	.	+	0	Parent=Os11t0533500-02
Chr11	irgsp1_rep	CDS	19438926	19439038	.	+	2	Parent=Os11t0533500-02
Chr11	irgsp1_rep	CDS	19439209	19439324	.	+	0	Parent=Os11t0533500-02
Chr11	irgsp1_rep	CDS	19439442	19439595	.	+	1	Parent=Os11t0533500-02
Chr11	irgsp1_rep	three_prime_UTR	19439596	19439851	.	+	.	Parent=Os11t0533500-02
Chr11	irgsp1_rep	mRNA	19438155	19438407	.	-	.	ID=Os11t0533550-00;Name=Os11t0533550-00;Locus_id=Os11g0533550;Note=Similar to ribosomal protein S18.;Transcript_evidence=X82510 (DDBJ);ORF_evidence=YP_874674.1 (RefSeq);TENOR=Os11t0533550-00;KEGG=Os11t0533550-00
Chr11	irgsp1_rep	five_prime_UTR	19438345	19438407	.	-	.	Parent=Os11t0533550-00
Chr11	irgsp1_rep	CDS	19438285	19438344	.	-	0	Parent=Os11t0533550-00
Chr11	irgsp1_rep	three_prime_UTR	19438155	19438284	.	-	.	Parent=Os11t0533550-00
Chr11	irgsp1_rep	mRNA	19440078	19442770	.	-	.	ID=Os11t0533600-01;Name=Os11t0533600-01;Locus_id=Os11g0533600;Note=Conserved hypothetical protein.;Transcript_evidence=AK109738 (DDBJ%2C Best hit);ORF_evidence=A3CBY5 (UniProt);NIAS_FLcDNA=002-146-C12;TENOR=Os11t0533600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	19442643	19442770	.	-	.	Parent=Os11t0533600-01
Chr11	irgsp1_rep	five_prime_UTR	19441436	19441448	.	-	.	Parent=Os11t0533600-01
Chr11	irgsp1_rep	CDS	19441097	19441435	.	-	0	Parent=Os11t0533600-01
Chr11	irgsp1_rep	three_prime_UTR	19440078	19441096	.	-	.	Parent=Os11t0533600-01
Chr11	irgsp1_rep	mRNA	19449011	19453827	.	-	.	ID=Os11t0533800-01;Name=Os11t0533800-01;Locus_id=Os11g0533800;Oryzabase Gene Symbol Synonym(s)=OsFbox602%2C Os_F0512;Oryzabase Gene Name Synonym(s)=F-box protein 602;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK069909 (DDBJ%2C Best hit);ORF_evidence=Q2R370 (UniProt);InterPro=FBD (IPR013596);NIAS_FLcDNA=J023037G05;Oryzabase=17365;Expression=AK069909;TENOR=Os11t0533800-01;KEGG=Os11t0533800-01
Chr11	irgsp1_rep	five_prime_UTR	19453675	19453827	.	-	.	Parent=Os11t0533800-01
Chr11	irgsp1_rep	five_prime_UTR	19453301	19453577	.	-	.	Parent=Os11t0533800-01
Chr11	irgsp1_rep	five_prime_UTR	19453102	19453202	.	-	.	Parent=Os11t0533800-01
Chr11	irgsp1_rep	five_prime_UTR	19452556	19452585	.	-	.	Parent=Os11t0533800-01
Chr11	irgsp1_rep	CDS	19452472	19452555	.	-	0	Parent=Os11t0533800-01
Chr11	irgsp1_rep	CDS	19451448	19452311	.	-	0	Parent=Os11t0533800-01
Chr11	irgsp1_rep	CDS	19451229	19451378	.	-	0	Parent=Os11t0533800-01
Chr11	irgsp1_rep	CDS	19449253	19449579	.	-	0	Parent=Os11t0533800-01
Chr11	irgsp1_rep	three_prime_UTR	19449011	19449252	.	-	.	Parent=Os11t0533800-01
Chr11	irgsp1_rep	mRNA	19475574	19476709	.	+	.	ID=Os11t0534100-00;Name=Os11t0534100-00;Locus_id=Os11g0534100;Note=Hypothetical conserved gene.;Transcript_evidence=BT066546 (DDBJ);ORF_evidence=Q2R368 (UniProt);InterPro=Protein of unknown function DUF716%2C TMEM45 (IPR006904);TENOR=Os11t0534100-00;KEGG=Os11t0534100-00
Chr11	irgsp1_rep	five_prime_UTR	19475574	19475736	.	+	.	Parent=Os11t0534100-00
Chr11	irgsp1_rep	CDS	19475737	19476618	.	+	0	Parent=Os11t0534100-00
Chr11	irgsp1_rep	three_prime_UTR	19476619	19476709	.	+	.	Parent=Os11t0534100-00
Chr11	irgsp1_rep	mRNA	19481652	19484228	.	-	.	ID=Os11t0534300-01;Name=Os11t0534300-01;Locus_id=Os11g0534300;Oryzabase Gene Symbol Synonym(s)=OsSTA261;Note=Zinc finger%2C DHHC-type domain containing protein.;Transcript_evidence=AK069995 (DDBJ%2C Best hit);ORF_evidence=NP_001151207.1 (RefSeq);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C DHHC-type%2C palmitoyltransferase (IPR001594);NIAS_FLcDNA=J023037B09;Oryzabase=19525;Expression=AK069995;TENOR=Os11t0534300-01;KEGG=Os11t0534300-01
Chr11	irgsp1_rep	five_prime_UTR	19484085	19484228	.	-	.	Parent=Os11t0534300-01
Chr11	irgsp1_rep	CDS	19483938	19484084	.	-	0	Parent=Os11t0534300-01
Chr11	irgsp1_rep	CDS	19483667	19483849	.	-	0	Parent=Os11t0534300-01
Chr11	irgsp1_rep	CDS	19483295	19483582	.	-	0	Parent=Os11t0534300-01
Chr11	irgsp1_rep	CDS	19482960	19483219	.	-	0	Parent=Os11t0534300-01
Chr11	irgsp1_rep	CDS	19482007	19482544	.	-	1	Parent=Os11t0534300-01
Chr11	irgsp1_rep	three_prime_UTR	19481652	19482006	.	-	.	Parent=Os11t0534300-01
Chr11	irgsp1_rep	mRNA	19488697	19490550	.	-	.	ID=Os11t0534500-00;Name=Os11t0534500-00;Locus_id=Os11g0534500;Note=Aminotransferase-like%2C plant mobile domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R365 (UniProt);InterPro=Aminotransferase-like%2C plant mobile domain (IPR019557);TENOR=Os11t0534500-00
Chr11	irgsp1_rep	CDS	19489998	19490550	.	-	0	Parent=Os11t0534500-00
Chr11	irgsp1_rep	CDS	19489364	19489896	.	-	2	Parent=Os11t0534500-00
Chr11	irgsp1_rep	CDS	19488913	19489287	.	-	0	Parent=Os11t0534500-00
Chr11	irgsp1_rep	CDS	19488697	19488831	.	-	0	Parent=Os11t0534500-00
Chr11	irgsp1_rep	mRNA	19509313	19509897	.	+	.	ID=Os11t0535525-01;Name=Os11t0535525-01;Locus_id=Os11g0535525;Oryzabase Gene Symbol Synonym(s)=Prol-23%2C pro10.4%2C SSA5;Oryzabase Gene Name Synonym(s)=2S albumin seed storage family protein;Note=Similar to 10 kDa prolamin.;Transcript_evidence=AK242313 (DDBJ%2C Best hit);ORF_evidence=A2XMB2 (UniProt);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Bifunctional trypsin/alpha-amylase inhibitor (IPR013771),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=J075195B22;Oryzabase=15153;TENOR=Os11t0535525-01;KEGG=Os11t0535525-01
Chr11	irgsp1_rep	five_prime_UTR	19509313	19509384	.	+	.	Parent=Os11t0535525-01
Chr11	irgsp1_rep	CDS	19509385	19509792	.	+	0	Parent=Os11t0535525-01
Chr11	irgsp1_rep	three_prime_UTR	19509793	19509897	.	+	.	Parent=Os11t0535525-01
Chr11	irgsp1_rep	mRNA	19523782	19525249	.	+	.	ID=Os11t0535600-01;Name=Os11t0535600-01;Locus_id=Os11g0535600;Note=Conserved hypothetical protein.;Transcript_evidence=AK100890 (DDBJ%2C Best hit);ORF_evidence=A3CBZ4 (UniProt);NIAS_FLcDNA=J023130A16;TENOR=Os11t0535600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	19523782	19523944	.	+	.	Parent=Os11t0535600-01
Chr11	irgsp1_rep	CDS	19523945	19525090	.	+	0	Parent=Os11t0535600-01
Chr11	irgsp1_rep	three_prime_UTR	19525091	19525249	.	+	.	Parent=Os11t0535600-01
Chr11	irgsp1_rep	mRNA	19533684	19533998	.	-	.	ID=Os11t0536000-01;Name=Os11t0536000-01;Locus_id=Os11g0536000;Note=Non-protein coding transcript.;Transcript_evidence=AK241446 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065163B05;TENOR=Os11t0536000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	exon	19533684	19533998	.	-	.	Parent=Os11t0536000-01
Chr11	irgsp1_rep	mRNA	19534498	19534662	.	+	.	ID=Os11t0536400-00;Name=Os11t0536400-00;Locus_id=Os11g0536400;Note=Non-protein coding transcript.;Transcript_evidence=BT087004 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0536400-00
Chr11	irgsp1_rep	exon	19534498	19534662	.	+	.	Parent=Os11t0536400-00
Chr11	irgsp1_rep	mRNA	19572490	19576497	.	-	.	ID=Os11t0536800-01;Name=Os11t0536800-01;Locus_id=Os11g0536800;Note=Amidase family protein.;Transcript_evidence=AK102704 (DDBJ%2C Best hit);ORF_evidence=NP_196353.2 (RefSeq);GO=Molecular Function: carbon-nitrogen ligase activity%2C with glutamine as amido-N-donor (GO:0016884);InterPro=Amidase (IPR000120),Amidase signature domain (IPR023631);NIAS_FLcDNA=J033103O13;Expression=AK102704;TENOR=Os11t0536800-01;KEGG=Os11t0536800-01
Chr11	irgsp1_rep	five_prime_UTR	19576490	19576497	.	-	.	Parent=Os11t0536800-01
Chr11	irgsp1_rep	CDS	19576244	19576489	.	-	0	Parent=Os11t0536800-01
Chr11	irgsp1_rep	CDS	19575647	19575740	.	-	0	Parent=Os11t0536800-01
Chr11	irgsp1_rep	CDS	19575450	19575565	.	-	2	Parent=Os11t0536800-01
Chr11	irgsp1_rep	CDS	19575139	19575363	.	-	0	Parent=Os11t0536800-01
Chr11	irgsp1_rep	CDS	19574971	19575053	.	-	0	Parent=Os11t0536800-01
Chr11	irgsp1_rep	CDS	19574763	19574863	.	-	1	Parent=Os11t0536800-01
Chr11	irgsp1_rep	CDS	19574206	19574329	.	-	2	Parent=Os11t0536800-01
Chr11	irgsp1_rep	CDS	19573971	19574125	.	-	1	Parent=Os11t0536800-01
Chr11	irgsp1_rep	CDS	19573750	19573886	.	-	2	Parent=Os11t0536800-01
Chr11	irgsp1_rep	CDS	19573495	19573665	.	-	0	Parent=Os11t0536800-01
Chr11	irgsp1_rep	CDS	19573185	19573409	.	-	0	Parent=Os11t0536800-01
Chr11	irgsp1_rep	CDS	19572860	19573093	.	-	0	Parent=Os11t0536800-01
Chr11	irgsp1_rep	CDS	19572656	19572754	.	-	0	Parent=Os11t0536800-01
Chr11	irgsp1_rep	three_prime_UTR	19572490	19572655	.	-	.	Parent=Os11t0536800-01
Chr11	irgsp1_rep	mRNA	19572542	19574828	.	-	.	ID=Os11t0536800-02;Name=Os11t0536800-02;Locus_id=Os11g0536800;Note=Similar to predicted protein.;Transcript_evidence=AK059236 (DDBJ%2C Best hit);ORF_evidence=NP_196353.2 (RefSeq);GO=Molecular Function: carbon-nitrogen ligase activity%2C with glutamine as amido-N-donor (GO:0016884);InterPro=Amidase (IPR000120),Amidase signature domain (IPR023631);NIAS_FLcDNA=001-024-F01;Expression=AK059236;TENOR=Os11t0536800-02;KEGG=Os11t0536800-02
Chr11	irgsp1_rep	five_prime_UTR	19574827	19574828	.	-	.	Parent=Os11t0536800-02
Chr11	irgsp1_rep	CDS	19574763	19574826	.	-	0	Parent=Os11t0536800-02
Chr11	irgsp1_rep	CDS	19574206	19574329	.	-	2	Parent=Os11t0536800-02
Chr11	irgsp1_rep	CDS	19573971	19574125	.	-	1	Parent=Os11t0536800-02
Chr11	irgsp1_rep	CDS	19573750	19573886	.	-	2	Parent=Os11t0536800-02
Chr11	irgsp1_rep	CDS	19573495	19573665	.	-	0	Parent=Os11t0536800-02
Chr11	irgsp1_rep	CDS	19573185	19573409	.	-	0	Parent=Os11t0536800-02
Chr11	irgsp1_rep	CDS	19572860	19573093	.	-	0	Parent=Os11t0536800-02
Chr11	irgsp1_rep	CDS	19572656	19572754	.	-	0	Parent=Os11t0536800-02
Chr11	irgsp1_rep	three_prime_UTR	19572542	19572655	.	-	.	Parent=Os11t0536800-02
Chr11	irgsp1_rep	mRNA	19580306	19585480	.	+	.	ID=Os11t0537300-01;Name=Os11t0537300-01;Locus_id=Os11g0537300;Note=Similar to DedA.;Transcript_evidence=AK243486 (DDBJ%2C Best hit);ORF_evidence=B4FGZ1 (UniProt);InterPro=SNARE associated Golgi protein (IPR015414);NIAS_FLcDNA=J100073G12;TENOR=Os11t0537300-01;KEGG=Os11t0537300-01
Chr11	irgsp1_rep	five_prime_UTR	19580306	19580362	.	+	.	Parent=Os11t0537300-01
Chr11	irgsp1_rep	CDS	19580363	19580682	.	+	0	Parent=Os11t0537300-01
Chr11	irgsp1_rep	CDS	19584590	19585076	.	+	1	Parent=Os11t0537300-01
Chr11	irgsp1_rep	three_prime_UTR	19585077	19585480	.	+	.	Parent=Os11t0537300-01
Chr11	irgsp1_rep	mRNA	19585671	19586377	.	+	.	ID=Os11t0537350-00;Name=Os11t0537350-00;Locus_id=Os11g0537350;CGSNL Gene Symbol=GLP11-1;CGSNL Gene Name=GERMIN-LIKE PROTEIN 11-1;Oryzabase Gene Symbol Synonym(s)=OsGLP11-1;Oryzabase Gene Name Synonym(s)=Germin-like protein 11-1;Note=Similar to predicted protein.;Transcript_evidence=EU960475 (DDBJ);ORF_evidence=NP_200983.1 (RefSeq);GO=Cellular Component: apoplast (GO:0048046),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),Germin%2C manganese binding site (IPR019780);Oryzabase=21433;TENOR=Os11t0537350-00;KEGG=Os11t0537350-00
Chr11	irgsp1_rep	five_prime_UTR	19585671	19585684	.	+	.	Parent=Os11t0537350-00
Chr11	irgsp1_rep	CDS	19585685	19586353	.	+	0	Parent=Os11t0537350-00
Chr11	irgsp1_rep	three_prime_UTR	19586354	19586377	.	+	.	Parent=Os11t0537350-00
Chr11	irgsp1_rep	mRNA	19589693	19596109	.	+	.	ID=Os11t0537375-00;Name=Os11t0537375-00;Locus_id=Os11g0537375;Note=Hypothetical protein.;Transcript_evidence=tplb0025i04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0537375-00
Chr11	irgsp1_rep	five_prime_UTR	19589693	19589808	.	+	.	Parent=Os11t0537375-00
Chr11	irgsp1_rep	five_prime_UTR	19590908	19591435	.	+	.	Parent=Os11t0537375-00
Chr11	irgsp1_rep	five_prime_UTR	19592956	19593137	.	+	.	Parent=Os11t0537375-00
Chr11	irgsp1_rep	five_prime_UTR	19593443	19593586	.	+	.	Parent=Os11t0537375-00
Chr11	irgsp1_rep	five_prime_UTR	19593683	19594582	.	+	.	Parent=Os11t0537375-00
Chr11	irgsp1_rep	CDS	19594583	19594585	.	+	0	Parent=Os11t0537375-00
Chr11	irgsp1_rep	CDS	19594705	19594788	.	+	0	Parent=Os11t0537375-00
Chr11	irgsp1_rep	CDS	19595279	19595330	.	+	0	Parent=Os11t0537375-00
Chr11	irgsp1_rep	CDS	19595468	19595614	.	+	2	Parent=Os11t0537375-00
Chr11	irgsp1_rep	CDS	19595697	19595848	.	+	2	Parent=Os11t0537375-00
Chr11	irgsp1_rep	CDS	19595987	19596109	.	+	0	Parent=Os11t0537375-00
Chr11	irgsp1_rep	mRNA	19592605	19593300	.	-	.	ID=Os11t0537400-01;Name=Os11t0537400-01;Locus_id=Os11g0537400;CGSNL Gene Symbol=RBOHI;CGSNL Gene Name=RESPIRATORY BURST OXIDASE HOMOLOG I;Oryzabase Gene Symbol Synonym(s)=OsrbohI%2C Os rbohI%2C rbohI%2C OsRbohI%2C OsRbohF;Oryzabase Gene Name Synonym(s)=respiratory burst oxidase homolog I;Note=Similar to respiratory burst oxidase-like protein D.;Transcript_evidence=AK063113 (DDBJ%2C Best hit);ORF_evidence=C6F010 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FAD-binding 8 (IPR013112);NIAS_FLcDNA=001-111-D10;Oryzabase=10482;Expression=AK063113;TENOR=Os11t0537400-01;KEGG=Os11t0537400-01
Chr11	irgsp1_rep	five_prime_UTR	19593147	19593300	.	-	.	Parent=Os11t0537400-01
Chr11	irgsp1_rep	CDS	19593012	19593146	.	-	0	Parent=Os11t0537400-01
Chr11	irgsp1_rep	three_prime_UTR	19592605	19593011	.	-	.	Parent=Os11t0537400-01
Chr11	irgsp1_rep	mRNA	19615010	19615672	.	-	.	ID=Os11t0537900-01;Name=Os11t0537900-01;Locus_id=Os11g0537900;Note=Conserved hypothetical protein.;Transcript_evidence=AK107113 (DDBJ%2C Best hit);ORF_evidence=Q69XI9 (UniProt);NIAS_FLcDNA=002-123-A08;Expression=AK107113;TENOR=Os11t0537900-01;KEGG=Os11t0537900-01
Chr11	irgsp1_rep	five_prime_UTR	19615612	19615672	.	-	.	Parent=Os11t0537900-01
Chr11	irgsp1_rep	CDS	19615258	19615611	.	-	0	Parent=Os11t0537900-01
Chr11	irgsp1_rep	three_prime_UTR	19615010	19615257	.	-	.	Parent=Os11t0537900-01
Chr11	irgsp1_rep	mRNA	19635307	19638047	.	+	.	ID=Os11t0538400-01;Name=Os11t0538400-01;Locus_id=Os11g0538400;Oryzabase Gene Symbol Synonym(s)=OsFbox604%2C Os_F0232;Oryzabase Gene Name Synonym(s)=F-box protein 604;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK109924 (DDBJ%2C Best hit);ORF_evidence=Q2R341 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-151-D12;Oryzabase=17367;Expression=AK109924;TENOR=Os11t0538400-01;KEGG=Os11t0538400-01
Chr11	irgsp1_rep	five_prime_UTR	19635307	19635605	.	+	.	Parent=Os11t0538400-01
Chr11	irgsp1_rep	five_prime_UTR	19635739	19635911	.	+	.	Parent=Os11t0538400-01
Chr11	irgsp1_rep	CDS	19635912	19637873	.	+	0	Parent=Os11t0538400-01
Chr11	irgsp1_rep	three_prime_UTR	19637874	19638047	.	+	.	Parent=Os11t0538400-01
Chr11	irgsp1_rep	mRNA	19649312	19655845	.	+	.	ID=Os11t0538900-01;Name=Os11t0538900-01;Locus_id=Os11g0538900;Note=Similar to Citrate synthase.;Transcript_evidence=AK072950 (DDBJ%2C Best hit);ORF_evidence=A2ZF17 (UniProt);GO=Biological Process: tricarboxylic acid cycle (GO:0006099),Biological Process: cellular carbohydrate metabolic process (GO:0044262),Molecular Function: citrate (Si)-synthase activity (GO:0004108),Molecular Function: transferase activity%2C transferring acyl groups%2C acyl groups converted into alkyl on transfer (GO:0046912);InterPro=Citrate synthase-like (IPR002020),Citrate synthase%2C eukaryotic (IPR010109),Citrate synthase-like%2C core (IPR016141),Citrate synthase-like%2C large alpha subdomain (IPR016142),Citrate synthase active site (IPR019810);NIAS_FLcDNA=J023146L07;TENOR=Os11t0538900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	19649312	19649558	.	+	.	Parent=Os11t0538900-01
Chr11	irgsp1_rep	CDS	19649559	19649604	.	+	0	Parent=Os11t0538900-01
Chr11	irgsp1_rep	CDS	19649722	19649792	.	+	2	Parent=Os11t0538900-01
Chr11	irgsp1_rep	CDS	19649888	19649950	.	+	0	Parent=Os11t0538900-01
Chr11	irgsp1_rep	CDS	19650128	19650169	.	+	0	Parent=Os11t0538900-01
Chr11	irgsp1_rep	CDS	19650731	19650796	.	+	0	Parent=Os11t0538900-01
Chr11	irgsp1_rep	CDS	19650899	19650964	.	+	0	Parent=Os11t0538900-01
Chr11	irgsp1_rep	CDS	19651448	19651561	.	+	0	Parent=Os11t0538900-01
Chr11	irgsp1_rep	CDS	19651763	19651826	.	+	0	Parent=Os11t0538900-01
Chr11	irgsp1_rep	CDS	19652570	19652652	.	+	2	Parent=Os11t0538900-01
Chr11	irgsp1_rep	CDS	19652874	19652923	.	+	0	Parent=Os11t0538900-01
Chr11	irgsp1_rep	CDS	19653015	19653092	.	+	1	Parent=Os11t0538900-01
Chr11	irgsp1_rep	CDS	19653191	19653319	.	+	1	Parent=Os11t0538900-01
Chr11	irgsp1_rep	CDS	19653415	19653457	.	+	1	Parent=Os11t0538900-01
Chr11	irgsp1_rep	CDS	19654158	19654244	.	+	0	Parent=Os11t0538900-01
Chr11	irgsp1_rep	CDS	19654388	19654489	.	+	0	Parent=Os11t0538900-01
Chr11	irgsp1_rep	CDS	19654727	19654834	.	+	0	Parent=Os11t0538900-01
Chr11	irgsp1_rep	CDS	19654921	19654971	.	+	0	Parent=Os11t0538900-01
Chr11	irgsp1_rep	CDS	19655057	19655130	.	+	0	Parent=Os11t0538900-01
Chr11	irgsp1_rep	CDS	19655250	19655301	.	+	1	Parent=Os11t0538900-01
Chr11	irgsp1_rep	CDS	19655387	19655482	.	+	0	Parent=Os11t0538900-01
Chr11	irgsp1_rep	three_prime_UTR	19655483	19655845	.	+	.	Parent=Os11t0538900-01
Chr11	irgsp1_rep	mRNA	19656814	19658769	.	+	.	ID=Os11t0539000-01;Name=Os11t0539000-01;Locus_id=Os11g0539000;Oryzabase Gene Symbol Synonym(s)=OsSTA262;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=AK071015 (DDBJ%2C Best hit);ORF_evidence=A2ZF18 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023081E02;Oryzabase=19526;TENOR=Os11t0539000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	19656814	19656831	.	+	.	Parent=Os11t0539000-01
Chr11	irgsp1_rep	CDS	19656832	19658685	.	+	0	Parent=Os11t0539000-01
Chr11	irgsp1_rep	three_prime_UTR	19658686	19658769	.	+	.	Parent=Os11t0539000-01
Chr11	irgsp1_rep	mRNA	19675012	19677815	.	+	.	ID=Os11t0539200-01;Name=Os11t0539200-01;Locus_id=Os11g0539200;CGSNL Gene Symbol=XTH2;CGSNL Gene Name=XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 2;Oryzabase Gene Symbol Synonym(s)=OsXTH2%2C XTR1%2C OsXTR1;Oryzabase Gene Name Synonym(s)=xyloglucan endotransglucosylase/hydrolase%2C xyloglucan endotransglucosylase 2%2C XET-related gene 1;Note=Similar to Xyloglucan endotransglycosylase XET2 (Fragment).;Transcript_evidence=AK071574 (DDBJ%2C Best hit),AK061093 (DDBJ%2C Best hit);ORF_evidence=E6Y2S0 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: cellular glucan metabolic process (GO:0006073),Cellular Component: cell wall (GO:0005618),Cellular Component: apoplast (GO:0048046),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762);InterPro=Glycoside hydrolase%2C family 16 (IPR000757),Glycoside hydrolase%2C family 16%2C active site (IPR008263),Concanavalin A-like lectin/glucanase (IPR008985),Xyloglucan endo-transglycosylase%2C C-terminal (IPR010713),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Xyloglucan endotransglucosylase/hydrolase (IPR016455);NIAS_FLcDNA=J023105D14,006-207-A02;Oryzabase=6500;Expression=AK071574;TENOR=Os11t0539200-01;KEGG=Os11t0539200-01 (EC:2.4.1.207)
Chr11	irgsp1_rep	five_prime_UTR	19675012	19675036	.	+	.	Parent=Os11t0539200-01
Chr11	irgsp1_rep	CDS	19675037	19675330	.	+	0	Parent=Os11t0539200-01
Chr11	irgsp1_rep	CDS	19675426	19675619	.	+	0	Parent=Os11t0539200-01
Chr11	irgsp1_rep	CDS	19677354	19677753	.	+	1	Parent=Os11t0539200-01
Chr11	irgsp1_rep	three_prime_UTR	19677754	19677815	.	+	.	Parent=Os11t0539200-01
Chr11	irgsp1_rep	mRNA	19694790	19696368	.	-	.	ID=Os11t0539500-00;Name=Os11t0539500-00;Locus_id=Os11g0539500;Note=Winged helix repressor DNA-binding domain containing protein.;Transcript_evidence=tplb0052o04 (Wheat FLcDNA);ORF_evidence=NP_001068034.1 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: O-methyltransferase activity (GO:0008171),Molecular Function: protein dimerization activity (GO:0046983);InterPro=O-methyltransferase%2C family 2 (IPR001077),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Plant methyltransferase dimerisation (IPR012967),O-methyltransferase%2C COMT%2C eukaryota (IPR016461);TENOR=Os11t0539500-00;KEGG=Os11t0539500-00
Chr11	irgsp1_rep	CDS	19695547	19696368	.	-	0	Parent=Os11t0539500-00
Chr11	irgsp1_rep	CDS	19694803	19695108	.	-	0	Parent=Os11t0539500-00
Chr11	irgsp1_rep	three_prime_UTR	19694790	19694802	.	-	.	Parent=Os11t0539500-00
Chr11	irgsp1_rep	mRNA	19701215	19702758	.	-	.	ID=Os11t0539600-00;Name=Os11t0539600-00;Locus_id=Os11g0539600;Oryzabase Gene Symbol Synonym(s)=OsFbox607%2C Os_F0045;Oryzabase Gene Name Synonym(s)=F-box protein 607;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2ZF22 (UniProt);Oryzabase=17370;TENOR=Os11t0539600-00
Chr11	irgsp1_rep	CDS	19701943	19702758	.	-	0	Parent=Os11t0539600-00
Chr11	irgsp1_rep	CDS	19701673	19701828	.	-	0	Parent=Os11t0539600-00
Chr11	irgsp1_rep	CDS	19701215	19701529	.	-	0	Parent=Os11t0539600-00
Chr11	irgsp1_rep	mRNA	19707522	19708469	.	+	.	ID=Os11t0539700-00;Name=Os11t0539700-00;Locus_id=Os11g0539700;Oryzabase Gene Symbol Synonym(s)=OsFbox608%2C Os_F0043;Oryzabase Gene Name Synonym(s)=F-box protein 608;Note=F-box domain%2C cyclin-like domain containing protein.;Transcript_evidence=EU961725 (DDBJ);ORF_evidence=NP_001176582.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810);Oryzabase=17371;TENOR=Os11t0539700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	19707522	19708469	.	+	0	Parent=Os11t0539700-00
Chr11	irgsp1_rep	mRNA	19709715	19716079	.	-	.	ID=Os11t0539800-01;Name=Os11t0539800-01;Locus_id=Os11g0539800;Note=Similar to Xaa-Pro aminopeptidase 1.;Transcript_evidence=AK105673 (DDBJ%2C Best hit);ORF_evidence=Q2R330 (UniProt);GO=Biological Process: cellular process (GO:0009987);InterPro=Peptidase M24%2C structural domain (IPR000994),Peptidase M24B%2C X-Pro dipeptidase/aminopeptidase P%2C conserved site (IPR001131);NIAS_FLcDNA=001-201-A09;Expression=AK105673;TENOR=Os11t0539800-01;KEGG=Os11t0539800-01 (EC:3.4.11.9)
Chr11	irgsp1_rep	five_prime_UTR	19716079	19716079	.	-	.	Parent=Os11t0539800-01
Chr11	irgsp1_rep	CDS	19716037	19716078	.	-	0	Parent=Os11t0539800-01
Chr11	irgsp1_rep	CDS	19715787	19715909	.	-	0	Parent=Os11t0539800-01
Chr11	irgsp1_rep	CDS	19715418	19715672	.	-	0	Parent=Os11t0539800-01
Chr11	irgsp1_rep	CDS	19714253	19714339	.	-	0	Parent=Os11t0539800-01
Chr11	irgsp1_rep	CDS	19714015	19714082	.	-	0	Parent=Os11t0539800-01
Chr11	irgsp1_rep	CDS	19713450	19713513	.	-	1	Parent=Os11t0539800-01
Chr11	irgsp1_rep	CDS	19712670	19712804	.	-	0	Parent=Os11t0539800-01
Chr11	irgsp1_rep	CDS	19712505	19712585	.	-	0	Parent=Os11t0539800-01
Chr11	irgsp1_rep	CDS	19711680	19711734	.	-	0	Parent=Os11t0539800-01
Chr11	irgsp1_rep	CDS	19711118	19711222	.	-	2	Parent=Os11t0539800-01
Chr11	irgsp1_rep	CDS	19710944	19711015	.	-	2	Parent=Os11t0539800-01
Chr11	irgsp1_rep	CDS	19710700	19710824	.	-	2	Parent=Os11t0539800-01
Chr11	irgsp1_rep	CDS	19710052	19710222	.	-	0	Parent=Os11t0539800-01
Chr11	irgsp1_rep	three_prime_UTR	19709715	19710051	.	-	.	Parent=Os11t0539800-01
Chr11	irgsp1_rep	mRNA	19720667	19721174	.	+	.	ID=Os11t0539901-01;Name=Os11t0539901-01;Locus_id=Os11g0539901;Note=Hypothetical conserved gene.;Transcript_evidence=AK058394 (DDBJ%2C Best hit);ORF_evidence=B8BCY4 (UniProt);NIAS_FLcDNA=001-015-A10;Expression=AK058394;TENOR=Os11t0539901-01;KEGG=Os11t0539901-01
Chr11	irgsp1_rep	five_prime_UTR	19720667	19720693	.	+	.	Parent=Os11t0539901-01
Chr11	irgsp1_rep	CDS	19720694	19720879	.	+	0	Parent=Os11t0539901-01
Chr11	irgsp1_rep	three_prime_UTR	19720880	19721174	.	+	.	Parent=Os11t0539901-01
Chr11	irgsp1_rep	mRNA	19720707	19721063	.	-	.	ID=Os11t0540000-00;Name=Os11t0540000-00;Locus_id=Os11g0540000;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os11t0540000-00;KEGG=Os11t0540000-00
Chr11	irgsp1_rep	CDS	19720707	19721063	.	-	0	Parent=Os11t0540000-00
Chr11	irgsp1_rep	mRNA	19723041	19734418	.	-	.	ID=Os11t0540100-01;Name=Os11t0540100-01;Locus_id=Os11g0540100;Note=Similar to Xaa-Pro aminopeptidase 2 (EC 3.4.11.9).;Transcript_evidence=AK102913 (DDBJ%2C Best hit);ORF_evidence=Q2R329 (UniProt);GO=Biological Process: cellular process (GO:0009987),Molecular Function: hydrolase activity (GO:0016787);InterPro=Creatinase (IPR000587),Peptidase M24%2C structural domain (IPR000994);NIAS_FLcDNA=J033113M01;Expression=AK102913;TENOR=Os11t0540100-01;KEGG=Os11t0540100-01 (EC:3.4.11.9)
Chr11	irgsp1_rep	five_prime_UTR	19734343	19734418	.	-	.	Parent=Os11t0540100-01
Chr11	irgsp1_rep	CDS	19734232	19734342	.	-	0	Parent=Os11t0540100-01
Chr11	irgsp1_rep	CDS	19733973	19734045	.	-	0	Parent=Os11t0540100-01
Chr11	irgsp1_rep	CDS	19733107	19733246	.	-	2	Parent=Os11t0540100-01
Chr11	irgsp1_rep	CDS	19731909	19732190	.	-	0	Parent=Os11t0540100-01
Chr11	irgsp1_rep	CDS	19731656	19731778	.	-	0	Parent=Os11t0540100-01
Chr11	irgsp1_rep	CDS	19731292	19731537	.	-	0	Parent=Os11t0540100-01
Chr11	irgsp1_rep	CDS	19730118	19730204	.	-	0	Parent=Os11t0540100-01
Chr11	irgsp1_rep	CDS	19729886	19729953	.	-	0	Parent=Os11t0540100-01
Chr11	irgsp1_rep	CDS	19727977	19728040	.	-	1	Parent=Os11t0540100-01
Chr11	irgsp1_rep	CDS	19726912	19727046	.	-	0	Parent=Os11t0540100-01
Chr11	irgsp1_rep	CDS	19726747	19726827	.	-	0	Parent=Os11t0540100-01
Chr11	irgsp1_rep	CDS	19725862	19725916	.	-	0	Parent=Os11t0540100-01
Chr11	irgsp1_rep	CDS	19725251	19725355	.	-	2	Parent=Os11t0540100-01
Chr11	irgsp1_rep	CDS	19725083	19725154	.	-	2	Parent=Os11t0540100-01
Chr11	irgsp1_rep	CDS	19724810	19724934	.	-	2	Parent=Os11t0540100-01
Chr11	irgsp1_rep	CDS	19723550	19723717	.	-	0	Parent=Os11t0540100-01
Chr11	irgsp1_rep	three_prime_UTR	19723041	19723549	.	-	.	Parent=Os11t0540100-01
Chr11	irgsp1_rep	mRNA	19753978	19754196	.	+	.	ID=Os11t0540500-00;Name=Os11t0540500-00;Locus_id=Os11g0540500;Note=Similar to Leucine Rich Repeat family protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R325 (UniProt);TENOR=Os11t0540500-00;KEGG=Os11t0540500-00
Chr11	irgsp1_rep	CDS	19753978	19754196	.	+	0	Parent=Os11t0540500-00
Chr11	irgsp1_rep	mRNA	19756568	19762592	.	+	.	ID=Os11t0540600-01;Name=Os11t0540600-01;Locus_id=Os11g0540600;Note=Protein of unknown function DUF247%2C plant family protein.;Transcript_evidence=AK065177 (DDBJ%2C Best hit);ORF_evidence=B8BKX2 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);NIAS_FLcDNA=J013002D11;Expression=AK065177;TENOR=Os11t0540600-01;KEGG=Os11t0540600-01
Chr11	irgsp1_rep	five_prime_UTR	19756568	19756617	.	+	.	Parent=Os11t0540600-01
Chr11	irgsp1_rep	CDS	19756618	19757262	.	+	0	Parent=Os11t0540600-01
Chr11	irgsp1_rep	CDS	19761705	19762424	.	+	0	Parent=Os11t0540600-01
Chr11	irgsp1_rep	three_prime_UTR	19762425	19762592	.	+	.	Parent=Os11t0540600-01
Chr11	irgsp1_rep	mRNA	19756780	19757271	.	-	.	ID=Os11t0540700-00;Name=Os11t0540700-00;Locus_id=Os11g0540700;Note=Non-protein coding transcript.;Transcript_evidence=FP099414 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0540700-00
Chr11	irgsp1_rep	exon	19756780	19757271	.	-	.	Parent=Os11t0540700-00
Chr11	irgsp1_rep	mRNA	19803005	19808418	.	-	.	ID=Os11t0540800-00;Name=Os11t0540800-00;Locus_id=Os11g0540800;Note=Protein of unknown function DUF247%2C plant domain containing protein.;Transcript_evidence=BT041766 (DDBJ);ORF_evidence=Q2R318 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);TENOR=Os11t0540800-00
Chr11	irgsp1_rep	five_prime_UTR	19808101	19808418	.	-	.	Parent=Os11t0540800-00
Chr11	irgsp1_rep	CDS	19808096	19808100	.	-	0	Parent=Os11t0540800-00
Chr11	irgsp1_rep	CDS	19807283	19807722	.	-	1	Parent=Os11t0540800-00
Chr11	irgsp1_rep	CDS	19803005	19803459	.	-	2	Parent=Os11t0540800-00
Chr11	irgsp1_rep	mRNA	19812507	19815131	.	-	.	ID=Os11t0540900-00;Name=Os11t0540900-00;Locus_id=Os11g0540900;Note=Protein of unknown function DUF247%2C plant domain containing protein.;Transcript_evidence=AK359512 (DDBJ);ORF_evidence=NP_001176583.1 (RefSeq);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);TENOR=Os11t0540900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	19814484	19815131	.	-	0	Parent=Os11t0540900-00
Chr11	irgsp1_rep	CDS	19812871	19813236	.	-	0	Parent=Os11t0540900-00
Chr11	irgsp1_rep	three_prime_UTR	19812507	19812870	.	-	.	Parent=Os11t0540900-00
Chr11	irgsp1_rep	mRNA	19839144	19839752	.	-	.	ID=Os11t0541200-00;Name=Os11t0541200-00;Locus_id=Os11g0541200;Note=Protein of unknown function DUF247%2C plant domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3A6E7 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);TENOR=Os11t0541200-00
Chr11	irgsp1_rep	CDS	19839144	19839752	.	-	0	Parent=Os11t0541200-00
Chr11	irgsp1_rep	mRNA	19839197	19839779	.	+	.	ID=Os11t0541400-00;Name=Os11t0541400-00;Locus_id=Os11g0541400;Note=Non-protein coding transcript.;Transcript_evidence=FP099414 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0541400-00
Chr11	irgsp1_rep	exon	19839197	19839779	.	+	.	Parent=Os11t0541400-00
Chr11	irgsp1_rep	mRNA	19858668	19870853	.	+	.	ID=Os11t0541600-00;Name=Os11t0541600-00;Locus_id=Os11g0541600;Note=Protein of unknown function DUF247%2C plant domain containing protein.;Transcript_evidence=AK359501 (DDBJ);ORF_evidence=B9GB27 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);TENOR=Os11t0541600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	19858668	19859351	.	+	0	Parent=Os11t0541600-00
Chr11	irgsp1_rep	CDS	19870041	19870772	.	+	0	Parent=Os11t0541600-00
Chr11	irgsp1_rep	three_prime_UTR	19870773	19870853	.	+	.	Parent=Os11t0541600-00
Chr11	irgsp1_rep	mRNA	19874927	19876378	.	-	.	ID=Os11t0542100-01;Name=Os11t0542100-01;Locus_id=Os11g0542100;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=AK241433 (DDBJ%2C Best hit);ORF_evidence=B8Q8A9 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J065162B12;TENOR=Os11t0542100-01;KEGG=Os11t0542100-01
Chr11	irgsp1_rep	five_prime_UTR	19876285	19876378	.	-	.	Parent=Os11t0542100-01
Chr11	irgsp1_rep	CDS	19875301	19876284	.	-	0	Parent=Os11t0542100-01
Chr11	irgsp1_rep	three_prime_UTR	19874927	19875300	.	-	.	Parent=Os11t0542100-01
Chr11	irgsp1_rep	mRNA	19926363	19927472	.	+	.	ID=Os11t0542800-01;Name=Os11t0542800-01;Locus_id=Os11g0542800;Note=Conserved hypothetical protein.;Transcript_evidence=AK241205 (DDBJ%2C Best hit);ORF_evidence=Q2R305 (UniProt);NIAS_FLcDNA=J065122G05;TENOR=Os11t0542800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	19926363	19926388	.	+	.	Parent=Os11t0542800-01
Chr11	irgsp1_rep	CDS	19926389	19926673	.	+	0	Parent=Os11t0542800-01
Chr11	irgsp1_rep	three_prime_UTR	19926674	19927472	.	+	.	Parent=Os11t0542800-01
Chr11	irgsp1_rep	mRNA	19939545	19940949	.	+	.	ID=Os11t0543100-01;Name=Os11t0543100-01;Locus_id=Os11g0543100;Note=Conserved hypothetical protein.;Transcript_evidence=AK108274 (DDBJ%2C Best hit);ORF_evidence=B9GB28 (UniProt);NIAS_FLcDNA=002-141-C06;Expression=AK108274;TENOR=Os11t0543100-01;KEGG=Os11t0543100-01
Chr11	irgsp1_rep	five_prime_UTR	19939545	19939597	.	+	.	Parent=Os11t0543100-01
Chr11	irgsp1_rep	CDS	19939598	19940067	.	+	0	Parent=Os11t0543100-01
Chr11	irgsp1_rep	CDS	19940552	19940681	.	+	1	Parent=Os11t0543100-01
Chr11	irgsp1_rep	three_prime_UTR	19940682	19940949	.	+	.	Parent=Os11t0543100-01
Chr11	irgsp1_rep	mRNA	19949921	19953420	.	+	.	ID=Os11t0543300-00;Name=Os11t0543300-00;Locus_id=Os11g0543300;Note=Protein of unknown function DUF247%2C plant domain containing protein.;Transcript_evidence=BT041766 (DDBJ);ORF_evidence=NP_001068043.1 (RefSeq);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);TENOR=Os11t0543300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	19949921	19950619	.	+	0	Parent=Os11t0543300-00
Chr11	irgsp1_rep	CDS	19952540	19952670	.	+	0	Parent=Os11t0543300-00
Chr11	irgsp1_rep	CDS	19952727	19953420	.	+	1	Parent=Os11t0543300-00
Chr11	irgsp1_rep	mRNA	19956772	19963299	.	-	.	ID=Os11t0543500-01;Name=Os11t0543500-01;Locus_id=Os11g0543500;Note=Similar to H0502B11.6 protein.;Transcript_evidence=AK072076 (DDBJ%2C Best hit);ORF_evidence=Q01L45 (UniProt);InterPro=Protein of unknown function DUF1624 (IPR012429);NIAS_FLcDNA=J013119B18;Expression=AK072076;TENOR=Os11t0543500-01;KEGG=Os11t0543500-01
Chr11	irgsp1_rep	five_prime_UTR	19963189	19963299	.	-	.	Parent=Os11t0543500-01
Chr11	irgsp1_rep	CDS	19962985	19963188	.	-	0	Parent=Os11t0543500-01
Chr11	irgsp1_rep	CDS	19960256	19960393	.	-	0	Parent=Os11t0543500-01
Chr11	irgsp1_rep	CDS	19960091	19960172	.	-	0	Parent=Os11t0543500-01
Chr11	irgsp1_rep	CDS	19959859	19959935	.	-	2	Parent=Os11t0543500-01
Chr11	irgsp1_rep	CDS	19959658	19959773	.	-	0	Parent=Os11t0543500-01
Chr11	irgsp1_rep	CDS	19959433	19959544	.	-	1	Parent=Os11t0543500-01
Chr11	irgsp1_rep	CDS	19959165	19959281	.	-	0	Parent=Os11t0543500-01
Chr11	irgsp1_rep	CDS	19958342	19958433	.	-	0	Parent=Os11t0543500-01
Chr11	irgsp1_rep	CDS	19958144	19958210	.	-	1	Parent=Os11t0543500-01
Chr11	irgsp1_rep	CDS	19957936	19958014	.	-	0	Parent=Os11t0543500-01
Chr11	irgsp1_rep	CDS	19957751	19957842	.	-	2	Parent=Os11t0543500-01
Chr11	irgsp1_rep	CDS	19957126	19957269	.	-	0	Parent=Os11t0543500-01
Chr11	irgsp1_rep	CDS	19956958	19956984	.	-	0	Parent=Os11t0543500-01
Chr11	irgsp1_rep	three_prime_UTR	19956772	19956957	.	-	.	Parent=Os11t0543500-01
Chr11	irgsp1_rep	mRNA	19965096	19965763	.	+	.	ID=Os11t0543600-01;Name=Os11t0543600-01;Locus_id=Os11g0543600;Note=Conserved hypothetical protein.;Transcript_evidence=AK109206 (DDBJ%2C Best hit);ORF_evidence=B9EU53 (UniProt);NIAS_FLcDNA=002-156-C09;TENOR=Os11t0543600-01
Chr11	irgsp1_rep	five_prime_UTR	19965096	19965096	.	+	.	Parent=Os11t0543600-01
Chr11	irgsp1_rep	CDS	19965097	19965360	.	+	0	Parent=Os11t0543600-01
Chr11	irgsp1_rep	three_prime_UTR	19965361	19965763	.	+	.	Parent=Os11t0543600-01
Chr11	irgsp1_rep	mRNA	19960766	19961777	.	-	.	ID=Os11t0543650-00;Name=Os11t0543650-00;Locus_id=Os11g0543650;Note=Non-protein coding transcript.;Transcript_evidence=CT835689 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os11t0543650-00
Chr11	irgsp1_rep	exon	19960766	19961777	.	-	.	Parent=Os11t0543650-00
Chr11	irgsp1_rep	mRNA	19971044	19972011	.	-	.	ID=Os11t0543800-01;Name=Os11t0543800-01;Locus_id=Os11g0543800;Note=Similar to importin-related.;Transcript_evidence=AK058944 (DDBJ%2C Best hit);ORF_evidence=NP_563920.1 (RefSeq);NIAS_FLcDNA=001-009-H09;Expression=AK058944;TENOR=Os11t0543800-01;KEGG=Os11t0543800-01
Chr11	irgsp1_rep	five_prime_UTR	19972011	19972011	.	-	.	Parent=Os11t0543800-01
Chr11	irgsp1_rep	CDS	19971780	19972010	.	-	0	Parent=Os11t0543800-01
Chr11	irgsp1_rep	three_prime_UTR	19971044	19971779	.	-	.	Parent=Os11t0543800-01
Chr11	irgsp1_rep	mRNA	19985515	19987297	.	-	.	ID=Os11t0543900-01;Name=Os11t0543900-01;Locus_id=Os11g0543900;Note=Hypothetical protein.;Transcript_evidence=AK107059 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-121-D11;Expression=AK107059;TENOR=Os11t0543900-01;KEGG=Os11t0543900-01
Chr11	irgsp1_rep	five_prime_UTR	19986019	19987297	.	-	.	Parent=Os11t0543900-01
Chr11	irgsp1_rep	CDS	19985671	19986018	.	-	0	Parent=Os11t0543900-01
Chr11	irgsp1_rep	three_prime_UTR	19985515	19985670	.	-	.	Parent=Os11t0543900-01
Chr11	irgsp1_rep	mRNA	19985660	19988488	.	+	.	ID=Os11t0544000-01;Name=Os11t0544000-01;Locus_id=Os11g0544000;Note=Hypothetical conserved gene.;Transcript_evidence=AK071393 (DDBJ%2C Best hit);ORF_evidence=Q2R2Z9 (UniProt);InterPro=FMN-binding split barrel-related (IPR009002);NIAS_FLcDNA=J023096A11;Expression=AK071393;TENOR=Os11t0544000-01;KEGG=Os11t0544000-01
Chr11	irgsp1_rep	five_prime_UTR	19985660	19985767	.	+	.	Parent=Os11t0544000-01
Chr11	irgsp1_rep	CDS	19985768	19985961	.	+	0	Parent=Os11t0544000-01
Chr11	irgsp1_rep	CDS	19986063	19986222	.	+	1	Parent=Os11t0544000-01
Chr11	irgsp1_rep	CDS	19986427	19986544	.	+	0	Parent=Os11t0544000-01
Chr11	irgsp1_rep	CDS	19986693	19986760	.	+	2	Parent=Os11t0544000-01
Chr11	irgsp1_rep	CDS	19986866	19987021	.	+	0	Parent=Os11t0544000-01
Chr11	irgsp1_rep	CDS	19987129	19987257	.	+	0	Parent=Os11t0544000-01
Chr11	irgsp1_rep	CDS	19987340	19987457	.	+	0	Parent=Os11t0544000-01
Chr11	irgsp1_rep	CDS	19987547	19987641	.	+	2	Parent=Os11t0544000-01
Chr11	irgsp1_rep	CDS	19987758	19987910	.	+	0	Parent=Os11t0544000-01
Chr11	irgsp1_rep	CDS	19988001	19988096	.	+	0	Parent=Os11t0544000-01
Chr11	irgsp1_rep	CDS	19988274	19988375	.	+	0	Parent=Os11t0544000-01
Chr11	irgsp1_rep	three_prime_UTR	19988376	19988488	.	+	.	Parent=Os11t0544000-01
Chr11	irgsp1_rep	mRNA	19985665	19989024	.	+	.	ID=Os11t0544000-02;Name=Os11t0544000-02;Locus_id=Os11g0544000;Note=Conserved hypothetical protein.;Transcript_evidence=AK066017 (DDBJ%2C Best hit);ORF_evidence=B8BKX9 (UniProt);NIAS_FLcDNA=J013050C10;Expression=AK066017;TENOR=Os11t0544000-02;KEGG=Os11t0544000-02
Chr11	irgsp1_rep	five_prime_UTR	19985665	19985767	.	+	.	Parent=Os11t0544000-02
Chr11	irgsp1_rep	CDS	19985768	19985961	.	+	0	Parent=Os11t0544000-02
Chr11	irgsp1_rep	CDS	19986063	19986222	.	+	1	Parent=Os11t0544000-02
Chr11	irgsp1_rep	CDS	19986442	19986544	.	+	0	Parent=Os11t0544000-02
Chr11	irgsp1_rep	CDS	19986693	19986760	.	+	2	Parent=Os11t0544000-02
Chr11	irgsp1_rep	CDS	19986866	19987060	.	+	0	Parent=Os11t0544000-02
Chr11	irgsp1_rep	three_prime_UTR	19987061	19987257	.	+	.	Parent=Os11t0544000-02
Chr11	irgsp1_rep	three_prime_UTR	19987340	19987457	.	+	.	Parent=Os11t0544000-02
Chr11	irgsp1_rep	three_prime_UTR	19987547	19987641	.	+	.	Parent=Os11t0544000-02
Chr11	irgsp1_rep	three_prime_UTR	19987758	19987910	.	+	.	Parent=Os11t0544000-02
Chr11	irgsp1_rep	three_prime_UTR	19988001	19988096	.	+	.	Parent=Os11t0544000-02
Chr11	irgsp1_rep	three_prime_UTR	19988274	19989024	.	+	.	Parent=Os11t0544000-02
Chr11	irgsp1_rep	mRNA	19988741	19991058	.	-	.	ID=Os11t0544100-00;Name=Os11t0544100-00;Locus_id=Os11g0544100;Note=Conserved hypothetical protein.;Transcript_evidence=AK376735 (DDBJ);ORF_evidence=NP_001068050.1 (RefSeq);TENOR=Os11t0544100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	19989706	19991058	.	-	0	Parent=Os11t0544100-00
Chr11	irgsp1_rep	CDS	19988989	19989105	.	-	0	Parent=Os11t0544100-00
Chr11	irgsp1_rep	three_prime_UTR	19988741	19988988	.	-	.	Parent=Os11t0544100-00
Chr11	irgsp1_rep	mRNA	19990418	19990726	.	+	.	ID=Os11t0544150-00;Name=Os11t0544150-00;Locus_id=Os11g0544150;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os11t0544150-00
Chr11	irgsp1_rep	CDS	19990418	19990726	.	+	0	Parent=Os11t0544150-00
Chr11	irgsp1_rep	mRNA	19994711	19996973	.	-	.	ID=Os11t0544200-01;Name=Os11t0544200-01;Locus_id=Os11g0544200;Note=Similar to virulent strain associated lipoprotein.;Transcript_evidence=AK108139 (DDBJ%2C Best hit);ORF_evidence=Q2R2Z7 (UniProt);NIAS_FLcDNA=002-139-E06;TENOR=Os11t0544200-01
Chr11	irgsp1_rep	five_prime_UTR	19996753	19996973	.	-	.	Parent=Os11t0544200-01
Chr11	irgsp1_rep	CDS	19996604	19996752	.	-	0	Parent=Os11t0544200-01
Chr11	irgsp1_rep	CDS	19994711	19994914	.	-	1	Parent=Os11t0544200-01
Chr11	irgsp1_rep	mRNA	19992104	19996931	.	-	.	ID=Os11t0544200-02;Name=Os11t0544200-02;Locus_id=Os11g0544200;Note=Similar to Ribosomal protein S7.;Transcript_evidence=AK120528 (DDBJ%2C Best hit);ORF_evidence=A2Q3T8 (UniProt);NIAS_FLcDNA=J013127F10;Expression=AK120528;TENOR=Os11t0544200-02;KEGG=Os11t0544200-02
Chr11	irgsp1_rep	five_prime_UTR	19996604	19996931	.	-	.	Parent=Os11t0544200-02
Chr11	irgsp1_rep	five_prime_UTR	19995020	19995096	.	-	.	Parent=Os11t0544200-02
Chr11	irgsp1_rep	five_prime_UTR	19993195	19994914	.	-	.	Parent=Os11t0544200-02
Chr11	irgsp1_rep	CDS	19992949	19993194	.	-	0	Parent=Os11t0544200-02
Chr11	irgsp1_rep	CDS	19992350	19992616	.	-	0	Parent=Os11t0544200-02
Chr11	irgsp1_rep	three_prime_UTR	19992104	19992349	.	-	.	Parent=Os11t0544200-02
Chr11	irgsp1_rep	mRNA	19992105	19992321	.	-	.	ID=Os11t0544200-03;Name=Os11t0544200-03;Locus_id=Os11g0544200;Note=Non-protein coding transcript.;Transcript_evidence=AK060692 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-030-C03;TENOR=Os11t0544200-03
Chr11	irgsp1_rep	exon	19992105	19992321	.	-	.	Parent=Os11t0544200-03
Chr11	irgsp1_rep	mRNA	20002692	20005365	.	-	.	ID=Os11t0544300-01;Name=Os11t0544300-01;Locus_id=Os11g0544300;Note=Peptidase C12%2C ubiquitin carboxyl-terminal hydrolase 1 domain containing protein.;Transcript_evidence=AK242747 (DDBJ%2C Best hit);ORF_evidence=NP_680185.1 (RefSeq);InterPro=Plant organelle RNA recognition domain (IPR021099);NIAS_FLcDNA=J090050G05;TENOR=Os11t0544300-01;KEGG=Os11t0544300-01
Chr11	irgsp1_rep	five_prime_UTR	20005168	20005365	.	-	.	Parent=Os11t0544300-01
Chr11	irgsp1_rep	five_prime_UTR	20004145	20004310	.	-	.	Parent=Os11t0544300-01
Chr11	irgsp1_rep	CDS	20002741	20004144	.	-	0	Parent=Os11t0544300-01
Chr11	irgsp1_rep	three_prime_UTR	20002692	20002740	.	-	.	Parent=Os11t0544300-01
Chr11	irgsp1_rep	mRNA	20008560	20013355	.	-	.	ID=Os11t0544500-01;Name=Os11t0544500-01;Locus_id=Os11g0544500;Note=Uncharacterised protein family UPF0016 domain containing protein.;Transcript_evidence=AK071982 (DDBJ%2C Best hit);ORF_evidence=Q2R2Z4 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Uncharacterised protein family UPF0016 (IPR001727);NIAS_FLcDNA=J013089B22;TENOR=Os11t0544500-01
Chr11	irgsp1_rep	five_prime_UTR	20013107	20013355	.	-	.	Parent=Os11t0544500-01
Chr11	irgsp1_rep	CDS	20012995	20013106	.	-	0	Parent=Os11t0544500-01
Chr11	irgsp1_rep	CDS	20011626	20011779	.	-	2	Parent=Os11t0544500-01
Chr11	irgsp1_rep	CDS	20011352	20011535	.	-	1	Parent=Os11t0544500-01
Chr11	irgsp1_rep	CDS	20010695	20010742	.	-	0	Parent=Os11t0544500-01
Chr11	irgsp1_rep	CDS	20010229	20010325	.	-	0	Parent=Os11t0544500-01
Chr11	irgsp1_rep	CDS	20009901	20010061	.	-	2	Parent=Os11t0544500-01
Chr11	irgsp1_rep	CDS	20009556	20009621	.	-	0	Parent=Os11t0544500-01
Chr11	irgsp1_rep	CDS	20009242	20009292	.	-	0	Parent=Os11t0544500-01
Chr11	irgsp1_rep	CDS	20009048	20009152	.	-	0	Parent=Os11t0544500-01
Chr11	irgsp1_rep	CDS	20008863	20008928	.	-	0	Parent=Os11t0544500-01
Chr11	irgsp1_rep	three_prime_UTR	20008560	20008862	.	-	.	Parent=Os11t0544500-01
Chr11	irgsp1_rep	mRNA	20008561	20013324	.	-	.	ID=Os11t0544500-02;Name=Os11t0544500-02;Locus_id=Os11g0544500;Note=Uncharacterised protein family UPF0016 domain containing protein.;Transcript_evidence=AK099080 (DDBJ%2C Best hit);ORF_evidence=Q2R2Z4 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Uncharacterised protein family UPF0016 (IPR001727);NIAS_FLcDNA=J013170L15;TENOR=Os11t0544500-02
Chr11	irgsp1_rep	five_prime_UTR	20013107	20013324	.	-	.	Parent=Os11t0544500-02
Chr11	irgsp1_rep	CDS	20012995	20013106	.	-	0	Parent=Os11t0544500-02
Chr11	irgsp1_rep	CDS	20011626	20011779	.	-	2	Parent=Os11t0544500-02
Chr11	irgsp1_rep	CDS	20011352	20011535	.	-	1	Parent=Os11t0544500-02
Chr11	irgsp1_rep	CDS	20010695	20010742	.	-	0	Parent=Os11t0544500-02
Chr11	irgsp1_rep	CDS	20010229	20010325	.	-	0	Parent=Os11t0544500-02
Chr11	irgsp1_rep	CDS	20009901	20010061	.	-	2	Parent=Os11t0544500-02
Chr11	irgsp1_rep	CDS	20009556	20009621	.	-	0	Parent=Os11t0544500-02
Chr11	irgsp1_rep	CDS	20009242	20009292	.	-	0	Parent=Os11t0544500-02
Chr11	irgsp1_rep	CDS	20009048	20009152	.	-	0	Parent=Os11t0544500-02
Chr11	irgsp1_rep	CDS	20008863	20008928	.	-	0	Parent=Os11t0544500-02
Chr11	irgsp1_rep	three_prime_UTR	20008561	20008862	.	-	.	Parent=Os11t0544500-02
Chr11	irgsp1_rep	mRNA	20018260	20024765	.	+	.	ID=Os11t0544600-01;Name=Os11t0544600-01;Locus_id=Os11g0544600;Note=Histone chaperone domain CHZ domain containing protein.;Transcript_evidence=AK064128 (DDBJ%2C Best hit);ORF_evidence=A2ZF51 (UniProt);InterPro=Histone chaperone domain CHZ (IPR019098);NIAS_FLcDNA=002-102-E08;Expression=AK064128;TENOR=Os11t0544600-01;KEGG=Os11t0544600-01
Chr11	irgsp1_rep	five_prime_UTR	20018260	20018389	.	+	.	Parent=Os11t0544600-01
Chr11	irgsp1_rep	CDS	20018390	20018490	.	+	0	Parent=Os11t0544600-01
Chr11	irgsp1_rep	CDS	20019381	20019486	.	+	1	Parent=Os11t0544600-01
Chr11	irgsp1_rep	CDS	20021314	20021591	.	+	0	Parent=Os11t0544600-01
Chr11	irgsp1_rep	CDS	20022766	20022871	.	+	1	Parent=Os11t0544600-01
Chr11	irgsp1_rep	CDS	20022991	20023338	.	+	0	Parent=Os11t0544600-01
Chr11	irgsp1_rep	CDS	20023416	20023492	.	+	0	Parent=Os11t0544600-01
Chr11	irgsp1_rep	CDS	20023571	20023695	.	+	1	Parent=Os11t0544600-01
Chr11	irgsp1_rep	CDS	20024063	20024314	.	+	2	Parent=Os11t0544600-01
Chr11	irgsp1_rep	CDS	20024493	20024515	.	+	2	Parent=Os11t0544600-01
Chr11	irgsp1_rep	three_prime_UTR	20024516	20024765	.	+	.	Parent=Os11t0544600-01
Chr11	irgsp1_rep	mRNA	20018265	20023695	.	+	.	ID=Os11t0544600-02;Name=Os11t0544600-02;Locus_id=Os11g0544600;Note=Hypothetical conserved gene.;Transcript_evidence=AK108583 (DDBJ%2C Best hit);ORF_evidence=A2ZF51 (UniProt);NIAS_FLcDNA=002-146-A06;TENOR=Os11t0544600-02
Chr11	irgsp1_rep	five_prime_UTR	20018265	20018389	.	+	.	Parent=Os11t0544600-02
Chr11	irgsp1_rep	CDS	20018390	20018490	.	+	0	Parent=Os11t0544600-02
Chr11	irgsp1_rep	CDS	20019381	20019486	.	+	1	Parent=Os11t0544600-02
Chr11	irgsp1_rep	CDS	20021314	20021591	.	+	0	Parent=Os11t0544600-02
Chr11	irgsp1_rep	CDS	20022766	20022871	.	+	1	Parent=Os11t0544600-02
Chr11	irgsp1_rep	CDS	20022991	20023338	.	+	0	Parent=Os11t0544600-02
Chr11	irgsp1_rep	CDS	20023416	20023492	.	+	0	Parent=Os11t0544600-02
Chr11	irgsp1_rep	CDS	20023571	20023695	.	+	1	Parent=Os11t0544600-02
Chr11	irgsp1_rep	mRNA	20026021	20029518	.	+	.	ID=Os11t0544700-01;Name=Os11t0544700-01;Locus_id=Os11g0544700;CGSNL Gene Symbol=DRAP1;CGSNL Gene Name=DR1 ASSOCIATED PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsDrAp1%2C DrAp1;Oryzabase Gene Name Synonym(s)=Dr1-associated protein1%2C eukaryotic general repressor DrAp1;Note=Repressor protein.;Transcript_evidence=AK072844 (DDBJ%2C Best hit);ORF_evidence=Q8W0W7 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Transcription factor CBF/NF-Y/archaeal histone (IPR003958),Histone-fold (IPR009072);NIAS_FLcDNA=J023143I16;Oryzabase=8498;Expression=AK072844;TENOR=Os11t0544700-01;KEGG=Os11t0544700-01
Chr11	irgsp1_rep	five_prime_UTR	20026021	20026064	.	+	.	Parent=Os11t0544700-01
Chr11	irgsp1_rep	CDS	20026065	20026097	.	+	0	Parent=Os11t0544700-01
Chr11	irgsp1_rep	CDS	20027238	20027310	.	+	0	Parent=Os11t0544700-01
Chr11	irgsp1_rep	CDS	20027766	20027859	.	+	2	Parent=Os11t0544700-01
Chr11	irgsp1_rep	CDS	20028562	20028678	.	+	1	Parent=Os11t0544700-01
Chr11	irgsp1_rep	CDS	20028763	20028820	.	+	1	Parent=Os11t0544700-01
Chr11	irgsp1_rep	CDS	20028892	20029293	.	+	0	Parent=Os11t0544700-01
Chr11	irgsp1_rep	three_prime_UTR	20029294	20029518	.	+	.	Parent=Os11t0544700-01
Chr11	irgsp1_rep	mRNA	20030056	20034630	.	-	.	ID=Os11t0544800-01;Name=Os11t0544800-01;Locus_id=Os11g0544800;RAP-DB Gene Symbol Synonym(s)=GATB%2C OsGatB%2C GatB;RAP-DB Gene Name Synonym(s)=GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE B SUBUNIT%2C glutamyl-tRNA (Gln) amidotransferase B subunit%2C glutamyl-tRNA(Gln) amidotransferase B subunit family protein;CGSNL Gene Symbol=GATB;CGSNL Gene Name=GLUTAMYL-TRNA(GLN)  AMIDOTRANSFERASE B SUBUNIT;Oryzabase Gene Symbol Synonym(s)=OsGatB%2C GatB;Oryzabase Gene Name Synonym(s)=glutamyl-tRNA(Gln) amidotransferase B subunit family protein%2C glutamyl-tRNA(Gln) amidotransferase B subunit;Note=Glutamyl-tRNA(Gln) amidotransferase subunit B%2C Primary root development;Transcript_evidence=AK064895;ORF_evidence=Q2R2Z0;GO=Molecular Function: ligase activity (GO:0016874),Molecular Function: carbon-nitrogen ligase activity%2C with glutamine as amido-N-donor (GO:0016884);InterPro=Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase%2C subunit B /E (IPR017959),Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase%2C B subunit (IPR004413),Aspartyl/Glutamyl-tRNA(Gln) amidotransferase%2C subunit B/E%2C catalytic (IPR006075),Aspartyl/glutamyl-tRNA amidotransferase subunit B-related (IPR003789),Asn/Gln amidotransferase (IPR018027),Glutamyl-tRNA(Gln) amidotransferase%2C subunit B%2C conserved site (IPR017958);NIAS_FLcDNA=J013000L07;Manual Curation=May 24%2C 2016;Literature_PMID=27200067;Oryzabase=21032;TENOR=Os11t0544800-01
Chr11	irgsp1_rep	five_prime_UTR	20034418	20034630	.	-	.	Parent=Os11t0544800-01
Chr11	irgsp1_rep	five_prime_UTR	20034124	20034148	.	-	.	Parent=Os11t0544800-01
Chr11	irgsp1_rep	CDS	20033509	20034123	.	-	0	Parent=Os11t0544800-01
Chr11	irgsp1_rep	CDS	20032595	20032804	.	-	0	Parent=Os11t0544800-01
Chr11	irgsp1_rep	CDS	20031867	20032007	.	-	0	Parent=Os11t0544800-01
Chr11	irgsp1_rep	CDS	20031567	20031770	.	-	0	Parent=Os11t0544800-01
Chr11	irgsp1_rep	CDS	20031101	20031298	.	-	0	Parent=Os11t0544800-01
Chr11	irgsp1_rep	CDS	20030814	20030882	.	-	0	Parent=Os11t0544800-01
Chr11	irgsp1_rep	CDS	20030311	20030427	.	-	0	Parent=Os11t0544800-01
Chr11	irgsp1_rep	CDS	20030145	20030225	.	-	0	Parent=Os11t0544800-01
Chr11	irgsp1_rep	three_prime_UTR	20030056	20030144	.	-	.	Parent=Os11t0544800-01
Chr11	irgsp1_rep	mRNA	20035464	20040371	.	+	.	ID=Os11t0544866-01;Name=Os11t0544866-01;Locus_id=Os11g0544866;Note=Hypothetical gene.;Transcript_evidence=AK288575 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090049A09;TENOR=Os11t0544866-01;KEGG=Os11t0544866-01
Chr11	irgsp1_rep	five_prime_UTR	20035464	20039640	.	+	.	Parent=Os11t0544866-01
Chr11	irgsp1_rep	CDS	20039641	20040012	.	+	0	Parent=Os11t0544866-01
Chr11	irgsp1_rep	three_prime_UTR	20040013	20040371	.	+	.	Parent=Os11t0544866-01
Chr11	irgsp1_rep	mRNA	20035538	20036090	.	-	.	ID=Os11t0544900-00;Name=Os11t0544900-00;Locus_id=Os11g0544900;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2ZF55 (UniProt);TENOR=Os11t0544900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	20036088	20036090	.	-	0	Parent=Os11t0544900-00
Chr11	irgsp1_rep	CDS	20035750	20035947	.	-	0	Parent=Os11t0544900-00
Chr11	irgsp1_rep	CDS	20035538	20035663	.	-	0	Parent=Os11t0544900-00
Chr11	irgsp1_rep	mRNA	20045078	20048974	.	-	.	ID=Os11t0545000-01;Name=Os11t0545000-01;Locus_id=Os11g0545000;Note=NOP5%2C N-terminal domain containing protein.;Transcript_evidence=AK100607 (DDBJ%2C Best hit);ORF_evidence=A2ZF55 (UniProt);InterPro=NOP5%2C N-terminal (IPR012974);NIAS_FLcDNA=J023107H24;Expression=AK100607;TENOR=Os11t0545000-01;KEGG=Os11t0545000-01
Chr11	irgsp1_rep	five_prime_UTR	20048912	20048974	.	-	.	Parent=Os11t0545000-01
Chr11	irgsp1_rep	CDS	20048800	20048911	.	-	0	Parent=Os11t0545000-01
Chr11	irgsp1_rep	CDS	20047851	20047966	.	-	2	Parent=Os11t0545000-01
Chr11	irgsp1_rep	CDS	20047712	20047753	.	-	0	Parent=Os11t0545000-01
Chr11	irgsp1_rep	CDS	20046684	20046851	.	-	0	Parent=Os11t0545000-01
Chr11	irgsp1_rep	CDS	20046091	20046267	.	-	0	Parent=Os11t0545000-01
Chr11	irgsp1_rep	CDS	20045605	20045799	.	-	0	Parent=Os11t0545000-01
Chr11	irgsp1_rep	CDS	20045306	20045518	.	-	0	Parent=Os11t0545000-01
Chr11	irgsp1_rep	three_prime_UTR	20045078	20045305	.	-	.	Parent=Os11t0545000-01
Chr11	irgsp1_rep	mRNA	20047113	20048955	.	-	.	ID=Os11t0545000-02;Name=Os11t0545000-02;Locus_id=Os11g0545000;Note=Conserved hypothetical protein.;Transcript_evidence=AK063297 (DDBJ%2C Best hit);ORF_evidence=A2ZF55 (UniProt);NIAS_FLcDNA=001-113-E11;TENOR=Os11t0545000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	20048013	20048955	.	-	.	Parent=Os11t0545000-02
Chr11	irgsp1_rep	CDS	20047713	20048012	.	-	0	Parent=Os11t0545000-02
Chr11	irgsp1_rep	three_prime_UTR	20047113	20047712	.	-	.	Parent=Os11t0545000-02
Chr11	irgsp1_rep	mRNA	20045013	20048940	.	-	.	ID=Os11t0545000-03;Name=Os11t0545000-03;Locus_id=Os11g0545000;Note=NOP5%2C N-terminal domain containing protein.;Transcript_evidence=AK058871 (DDBJ%2C Best hit);ORF_evidence=A2ZF55 (UniProt);InterPro=NOP5%2C N-terminal (IPR012974);NIAS_FLcDNA=001-006-E09;Expression=AK058871;TENOR=Os11t0545000-03;KEGG=Os11t0545000-03
Chr11	irgsp1_rep	five_prime_UTR	20048912	20048940	.	-	.	Parent=Os11t0545000-03
Chr11	irgsp1_rep	CDS	20048800	20048911	.	-	0	Parent=Os11t0545000-03
Chr11	irgsp1_rep	CDS	20047851	20047966	.	-	2	Parent=Os11t0545000-03
Chr11	irgsp1_rep	CDS	20047712	20047753	.	-	0	Parent=Os11t0545000-03
Chr11	irgsp1_rep	CDS	20046684	20046851	.	-	0	Parent=Os11t0545000-03
Chr11	irgsp1_rep	CDS	20046091	20046267	.	-	0	Parent=Os11t0545000-03
Chr11	irgsp1_rep	CDS	20045605	20045799	.	-	0	Parent=Os11t0545000-03
Chr11	irgsp1_rep	CDS	20045306	20045518	.	-	0	Parent=Os11t0545000-03
Chr11	irgsp1_rep	three_prime_UTR	20045013	20045305	.	-	.	Parent=Os11t0545000-03
Chr11	irgsp1_rep	mRNA	20063595	20074615	.	+	.	ID=Os11t0545300-01;Name=Os11t0545300-01;Locus_id=Os11g0545300;CGSNL Gene Symbol=SPO11-5;CGSNL Gene Name=TOPOISOMERASE 6 SUBUNIT A-LIKE PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsSPO11-5%2C OsSPO11-5C%2C SPO11-1A%2C SPO11-1B%2C SPO11-1C%2C SPO11-1D%2C OsUBP13%2C UBP13%2C OsUBP35%2C UBP35;Oryzabase Gene Name Synonym(s)=ubiquitin-specific processing protease 13%2C Ubiquitin-specific protease 35;Note=Similar to Topoisomerase 6 subunit A-like protein.;Transcript_evidence=AK065551 (DDBJ%2C Best hit);ORF_evidence=D1MIY4 (UniProt);NIAS_FLcDNA=J013026E19;Oryzabase=9114;TENOR=Os11t0545300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	20063595	20063881	.	+	.	Parent=Os11t0545300-01
Chr11	irgsp1_rep	five_prime_UTR	20063977	20064297	.	+	.	Parent=Os11t0545300-01
Chr11	irgsp1_rep	five_prime_UTR	20067783	20067877	.	+	.	Parent=Os11t0545300-01
Chr11	irgsp1_rep	five_prime_UTR	20067941	20068141	.	+	.	Parent=Os11t0545300-01
Chr11	irgsp1_rep	five_prime_UTR	20070138	20070340	.	+	.	Parent=Os11t0545300-01
Chr11	irgsp1_rep	five_prime_UTR	20070419	20070429	.	+	.	Parent=Os11t0545300-01
Chr11	irgsp1_rep	CDS	20070430	20070455	.	+	0	Parent=Os11t0545300-01
Chr11	irgsp1_rep	CDS	20070538	20070826	.	+	1	Parent=Os11t0545300-01
Chr11	irgsp1_rep	three_prime_UTR	20070827	20071557	.	+	.	Parent=Os11t0545300-01
Chr11	irgsp1_rep	three_prime_UTR	20071634	20071794	.	+	.	Parent=Os11t0545300-01
Chr11	irgsp1_rep	three_prime_UTR	20071901	20071997	.	+	.	Parent=Os11t0545300-01
Chr11	irgsp1_rep	three_prime_UTR	20072073	20072264	.	+	.	Parent=Os11t0545300-01
Chr11	irgsp1_rep	three_prime_UTR	20072351	20072412	.	+	.	Parent=Os11t0545300-01
Chr11	irgsp1_rep	three_prime_UTR	20072481	20072627	.	+	.	Parent=Os11t0545300-01
Chr11	irgsp1_rep	three_prime_UTR	20072955	20074615	.	+	.	Parent=Os11t0545300-01
Chr11	irgsp1_rep	mRNA	20063777	20068281	.	+	.	ID=Os11t0545300-02;Name=Os11t0545300-02;Locus_id=Os11g0545300;CGSNL Gene Symbol=SPO11-5;CGSNL Gene Name=TOPOISOMERASE 6 SUBUNIT A-LIKE PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsSPO11-5%2C OsSPO11-5C%2C SPO11-1A%2C SPO11-1B%2C SPO11-1C%2C SPO11-1D%2C OsUBP13%2C UBP13%2C OsUBP35%2C UBP35;Oryzabase Gene Name Synonym(s)=ubiquitin-specific processing protease 13%2C Ubiquitin-specific protease 35;Note=Hypothetical gene.;Transcript_evidence=AK099478 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013025A13;Oryzabase=9114;Expression=AK099478;TENOR=Os11t0545300-02;KEGG=Os11t0545300-02
Chr11	irgsp1_rep	five_prime_UTR	20063777	20063881	.	+	.	Parent=Os11t0545300-02
Chr11	irgsp1_rep	five_prime_UTR	20063977	20064277	.	+	.	Parent=Os11t0545300-02
Chr11	irgsp1_rep	CDS	20064278	20064297	.	+	0	Parent=Os11t0545300-02
Chr11	irgsp1_rep	CDS	20067783	20067877	.	+	1	Parent=Os11t0545300-02
Chr11	irgsp1_rep	CDS	20067947	20068059	.	+	2	Parent=Os11t0545300-02
Chr11	irgsp1_rep	three_prime_UTR	20068060	20068281	.	+	.	Parent=Os11t0545300-02
Chr11	irgsp1_rep	mRNA	20070116	20074330	.	+	.	ID=Os11t0545300-03;Name=Os11t0545300-03;Locus_id=Os11g0545300;RAP-DB Gene Symbol Synonym(s)=OsSpo11-5;CGSNL Gene Symbol=SPO11-5;CGSNL Gene Name=TOPOISOMERASE 6 SUBUNIT A-LIKE PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsSPO11-5%2C OsSPO11-5C%2C SPO11-1A%2C SPO11-1B%2C SPO11-1C%2C SPO11-1D%2C OsUBP13%2C UBP13%2C OsUBP35%2C UBP35;Oryzabase Gene Name Synonym(s)=ubiquitin-specific processing protease 13%2C Ubiquitin-specific protease 35;Note=Homologue of the archaeal topoisomerase VIA;Transcript_evidence=GU170364;ORF_evidence=D1MIY4;GO=Biological Process: DNA catabolic process%2C endonucleolytic (GO:0000737),Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Biological Process: protein deubiquitination (GO:0016579),Molecular Function: DNA binding (GO:0003677),Molecular Function: endodeoxyribonuclease activity%2C producing 3'-phosphomonoesters (GO:0016889),Molecular Function: thiol-dependent ubiquitinyl hydrolase activity (GO:0036459),Cellular Component: Chromosome (GO:0005694);InterPro=Papain-like cysteine peptidase superfamily (IPR038765),Spo11/DNA topoisomerase VI subunit A superfamily (IPR036078),Spo11/DNA topoisomerase VI subunit A (IPR002815),Ubiquitin specific protease domain (IPR028889),Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase (IPR001394),Ubiquitin specific protease%2C conserved site (IPR018200);Manual Curation=August 27%2C 2020;Literature_PMID=21637817;Oryzabase=9114
Chr11	irgsp1_rep	five_prime_UTR	20070116	20070340	.	+	.	Parent=Os11t0545300-03
Chr11	irgsp1_rep	five_prime_UTR	20070419	20070429	.	+	.	Parent=Os11t0545300-03
Chr11	irgsp1_rep	CDS	20070430	20070455	.	+	0	Parent=Os11t0545300-03
Chr11	irgsp1_rep	CDS	20070538	20070781	.	+	1	Parent=Os11t0545300-03
Chr11	irgsp1_rep	CDS	20070928	20071001	.	+	0	Parent=Os11t0545300-03
Chr11	irgsp1_rep	CDS	20071080	20071165	.	+	1	Parent=Os11t0545300-03
Chr11	irgsp1_rep	CDS	20071235	20071397	.	+	2	Parent=Os11t0545300-03
Chr11	irgsp1_rep	CDS	20071479	20071557	.	+	1	Parent=Os11t0545300-03
Chr11	irgsp1_rep	CDS	20071634	20071794	.	+	0	Parent=Os11t0545300-03
Chr11	irgsp1_rep	CDS	20071901	20071997	.	+	1	Parent=Os11t0545300-03
Chr11	irgsp1_rep	CDS	20072073	20072264	.	+	0	Parent=Os11t0545300-03
Chr11	irgsp1_rep	CDS	20072351	20072412	.	+	0	Parent=Os11t0545300-03
Chr11	irgsp1_rep	CDS	20072481	20072627	.	+	1	Parent=Os11t0545300-03
Chr11	irgsp1_rep	CDS	20072955	20073768	.	+	1	Parent=Os11t0545300-03
Chr11	irgsp1_rep	three_prime_UTR	20073769	20074330	.	+	.	Parent=Os11t0545300-03
Chr11	irgsp1_rep	mRNA	20098067	20106820	.	-	.	ID=Os11t0545600-01;Name=Os11t0545600-01;Locus_id=Os11g0545600;RAP-DB Gene Symbol Synonym(s)=MRG702;RAP-DB Gene Name Synonym(s)=MORF-RELATED GENE702;Oryzabase Gene Symbol Synonym(s)=MRG702%2C OsMRG702;Oryzabase Gene Name Synonym(s)=MORF-RELATED GENE702%2C MORF-RELATED GENE 702;Note=Reader protein of trimethylated histone H3 lysine 4 (H3K4me3) and histone H3 lysine 36 (H3K36me3)%2C Brassinosteroid-regulated growth%2C Flowering time control;Transcript_evidence=AK105069;ORF_evidence=Q2R2X7;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Biological Process: Chromatin modification (GO:0016568),Cellular Component: nucleus (GO:0005634);InterPro=MRG (IPR008676),Chromo domain-like (IPR016197),Chromo/Chromo shadow domain (IPR000953),RNA binding activity-knot of a Chromodomain (IPR025995),MRG domain (IPR026541);NIAS_FLcDNA=001-045-C01;Manual Curation=September 2%2C 2015;Literature_PMID=25855537;Oryzabase=22350;Expression=AK105069;TENOR=Os11t0545600-01;KEGG=Os11t0545600-01
Chr11	irgsp1_rep	five_prime_UTR	20106708	20106820	.	-	.	Parent=Os11t0545600-01
Chr11	irgsp1_rep	five_prime_UTR	20106530	20106622	.	-	.	Parent=Os11t0545600-01
Chr11	irgsp1_rep	CDS	20106428	20106529	.	-	0	Parent=Os11t0545600-01
Chr11	irgsp1_rep	CDS	20105941	20105994	.	-	0	Parent=Os11t0545600-01
Chr11	irgsp1_rep	CDS	20105804	20105817	.	-	0	Parent=Os11t0545600-01
Chr11	irgsp1_rep	CDS	20104652	20104797	.	-	1	Parent=Os11t0545600-01
Chr11	irgsp1_rep	CDS	20103579	20103614	.	-	2	Parent=Os11t0545600-01
Chr11	irgsp1_rep	CDS	20103447	20103487	.	-	2	Parent=Os11t0545600-01
Chr11	irgsp1_rep	CDS	20102467	20102571	.	-	0	Parent=Os11t0545600-01
Chr11	irgsp1_rep	CDS	20101713	20101792	.	-	0	Parent=Os11t0545600-01
Chr11	irgsp1_rep	CDS	20099484	20099653	.	-	1	Parent=Os11t0545600-01
Chr11	irgsp1_rep	CDS	20098616	20098700	.	-	2	Parent=Os11t0545600-01
Chr11	irgsp1_rep	CDS	20098211	20098295	.	-	1	Parent=Os11t0545600-01
Chr11	irgsp1_rep	three_prime_UTR	20098067	20098210	.	-	.	Parent=Os11t0545600-01
Chr11	irgsp1_rep	mRNA	20098138	20106787	.	-	.	ID=Os11t0545600-02;Name=Os11t0545600-02;Locus_id=Os11g0545600;Oryzabase Gene Symbol Synonym(s)=MRG702%2C OsMRG702;Oryzabase Gene Name Synonym(s)=MORF-RELATED GENE702%2C MORF-RELATED GENE 702;Note=Similar to H0102C09.3 protein.;Transcript_evidence=AK099810 (DDBJ%2C Best hit);ORF_evidence=Q25AL3 (UniProt);GO=Cellular Component: nucleus (GO:0005634);InterPro=MRG (IPR008676),Chromo domain-like (IPR016197);NIAS_FLcDNA=J013099D07;Oryzabase=22350;TENOR=Os11t0545600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	20106708	20106787	.	-	.	Parent=Os11t0545600-02
Chr11	irgsp1_rep	five_prime_UTR	20106428	20106622	.	-	.	Parent=Os11t0545600-02
Chr11	irgsp1_rep	five_prime_UTR	20105941	20105994	.	-	.	Parent=Os11t0545600-02
Chr11	irgsp1_rep	five_prime_UTR	20105803	20105817	.	-	.	Parent=Os11t0545600-02
Chr11	irgsp1_rep	five_prime_UTR	20105037	20105229	.	-	.	Parent=Os11t0545600-02
Chr11	irgsp1_rep	CDS	20104652	20105036	.	-	0	Parent=Os11t0545600-02
Chr11	irgsp1_rep	CDS	20103579	20103614	.	-	2	Parent=Os11t0545600-02
Chr11	irgsp1_rep	CDS	20103447	20103487	.	-	2	Parent=Os11t0545600-02
Chr11	irgsp1_rep	CDS	20102467	20102571	.	-	0	Parent=Os11t0545600-02
Chr11	irgsp1_rep	CDS	20101713	20101792	.	-	0	Parent=Os11t0545600-02
Chr11	irgsp1_rep	CDS	20099484	20099653	.	-	1	Parent=Os11t0545600-02
Chr11	irgsp1_rep	CDS	20098616	20098700	.	-	2	Parent=Os11t0545600-02
Chr11	irgsp1_rep	CDS	20098211	20098295	.	-	1	Parent=Os11t0545600-02
Chr11	irgsp1_rep	three_prime_UTR	20098138	20098210	.	-	.	Parent=Os11t0545600-02
Chr11	irgsp1_rep	mRNA	20098066	20103633	.	-	.	ID=Os11t0545600-03;Name=Os11t0545600-03;Locus_id=Os11g0545600;Oryzabase Gene Symbol Synonym(s)=MRG702%2C OsMRG702;Oryzabase Gene Name Synonym(s)=MORF-RELATED GENE702%2C MORF-RELATED GENE 702;Note=MRG family protein.;Transcript_evidence=AK068797 (DDBJ%2C Best hit);ORF_evidence=Q25AL3 (UniProt);GO=Cellular Component: nucleus (GO:0005634);InterPro=MRG (IPR008676);NIAS_FLcDNA=J013162H22;Oryzabase=22350;Expression=AK068797;TENOR=Os11t0545600-03;KEGG=Os11t0545600-03
Chr11	irgsp1_rep	five_prime_UTR	20103615	20103633	.	-	.	Parent=Os11t0545600-03
Chr11	irgsp1_rep	CDS	20103447	20103614	.	-	0	Parent=Os11t0545600-03
Chr11	irgsp1_rep	CDS	20102467	20102571	.	-	0	Parent=Os11t0545600-03
Chr11	irgsp1_rep	CDS	20101713	20101792	.	-	0	Parent=Os11t0545600-03
Chr11	irgsp1_rep	CDS	20099484	20099653	.	-	1	Parent=Os11t0545600-03
Chr11	irgsp1_rep	CDS	20098616	20098700	.	-	2	Parent=Os11t0545600-03
Chr11	irgsp1_rep	CDS	20098211	20098295	.	-	1	Parent=Os11t0545600-03
Chr11	irgsp1_rep	three_prime_UTR	20098066	20098210	.	-	.	Parent=Os11t0545600-03
Chr11	irgsp1_rep	mRNA	20107052	20107816	.	-	.	ID=Os11t0545650-00;Name=Os11t0545650-00;Locus_id=Os11g0545650;Note=Conserved hypothetical protein.;Transcript_evidence=AK359029 (DDBJ);ORF_evidence=Q5ZBN4 (UniProt);TENOR=Os11t0545650-00
Chr11	irgsp1_rep	CDS	20107052	20107816	.	-	0	Parent=Os11t0545650-00
Chr11	irgsp1_rep	mRNA	20109599	20113395	.	-	.	ID=Os11t0545700-01;Name=Os11t0545700-01;Locus_id=Os11g0545700;Note=Similar to Centromere/kinetochore protein zw10 homolog.;Transcript_evidence=AK058845 (DDBJ%2C Best hit);ORF_evidence=XP_002879422.1 (RefSeq);GO=Biological Process: mitosis (GO:0007067),Cellular Component: Chromosome%2C centromeric region (GO:0000775),Cellular Component: nucleus (GO:0005634);InterPro=RZZ complex%2C subunit Zw10 (IPR009361);NIAS_FLcDNA=001-004-G04;Expression=AK058845;TENOR=Os11t0545700-01;KEGG=Os11t0545700-01
Chr11	irgsp1_rep	five_prime_UTR	20113387	20113395	.	-	.	Parent=Os11t0545700-01
Chr11	irgsp1_rep	CDS	20113344	20113386	.	-	0	Parent=Os11t0545700-01
Chr11	irgsp1_rep	CDS	20113075	20113172	.	-	2	Parent=Os11t0545700-01
Chr11	irgsp1_rep	CDS	20111647	20111742	.	-	0	Parent=Os11t0545700-01
Chr11	irgsp1_rep	CDS	20111033	20111161	.	-	0	Parent=Os11t0545700-01
Chr11	irgsp1_rep	CDS	20110828	20110905	.	-	0	Parent=Os11t0545700-01
Chr11	irgsp1_rep	CDS	20110369	20110527	.	-	0	Parent=Os11t0545700-01
Chr11	irgsp1_rep	CDS	20110156	20110297	.	-	0	Parent=Os11t0545700-01
Chr11	irgsp1_rep	CDS	20109978	20110060	.	-	2	Parent=Os11t0545700-01
Chr11	irgsp1_rep	CDS	20109734	20109817	.	-	0	Parent=Os11t0545700-01
Chr11	irgsp1_rep	three_prime_UTR	20109599	20109733	.	-	.	Parent=Os11t0545700-01
Chr11	irgsp1_rep	mRNA	20119120	20125235	.	-	.	ID=Os11t0545800-01;Name=Os11t0545800-01;Locus_id=Os11g0545800;Note=Similar to regulator of Chromosome condensation (RCC1) family protein / UVB-resistance protein-related.;Transcript_evidence=AK073687 (DDBJ%2C Best hit);ORF_evidence=NP_680156.2 (RefSeq);InterPro=Regulator of Chromosome condensation%2C RCC1 (IPR000408),Regulator of Chromosome condensation/beta-lactamase-inhibitor protein II (IPR009091);NIAS_FLcDNA=J033055O21;TENOR=Os11t0545800-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	20125145	20125235	.	-	.	Parent=Os11t0545800-01
Chr11	irgsp1_rep	CDS	20124877	20125144	.	-	0	Parent=Os11t0545800-01
Chr11	irgsp1_rep	CDS	20124687	20124763	.	-	2	Parent=Os11t0545800-01
Chr11	irgsp1_rep	CDS	20124115	20124193	.	-	0	Parent=Os11t0545800-01
Chr11	irgsp1_rep	CDS	20123107	20123166	.	-	2	Parent=Os11t0545800-01
Chr11	irgsp1_rep	CDS	20122682	20122783	.	-	2	Parent=Os11t0545800-01
Chr11	irgsp1_rep	CDS	20122508	20122601	.	-	2	Parent=Os11t0545800-01
Chr11	irgsp1_rep	CDS	20121760	20121802	.	-	1	Parent=Os11t0545800-01
Chr11	irgsp1_rep	CDS	20121640	20121685	.	-	0	Parent=Os11t0545800-01
Chr11	irgsp1_rep	CDS	20121517	20121557	.	-	2	Parent=Os11t0545800-01
Chr11	irgsp1_rep	CDS	20121319	20121421	.	-	0	Parent=Os11t0545800-01
Chr11	irgsp1_rep	CDS	20120695	20120749	.	-	2	Parent=Os11t0545800-01
Chr11	irgsp1_rep	CDS	20120517	20120583	.	-	1	Parent=Os11t0545800-01
Chr11	irgsp1_rep	CDS	20120375	20120411	.	-	0	Parent=Os11t0545800-01
Chr11	irgsp1_rep	CDS	20119828	20119907	.	-	2	Parent=Os11t0545800-01
Chr11	irgsp1_rep	CDS	20119442	20119567	.	-	0	Parent=Os11t0545800-01
Chr11	irgsp1_rep	three_prime_UTR	20119120	20119441	.	-	.	Parent=Os11t0545800-01
Chr11	irgsp1_rep	mRNA	20129027	20134231	.	+	.	ID=Os11t0546000-01;Name=Os11t0546000-01;Locus_id=Os11g0546000;CGSNL Gene Symbol=ABCE2;CGSNL Gene Name=ABC TRANSPORTER E FAMILY MEMBER 2;Oryzabase Gene Symbol Synonym(s)=OsABCE2%2C RLI;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCE subgroup member 2%2C RNase L inhibitor;Note=Similar to RNase L inhibitor-like protein.;Transcript_evidence=AK103366 (DDBJ%2C Best hit);ORF_evidence=Q8L8I4 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=4Fe-4S binding domain (IPR001450),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),RNase L inhibitor RLI%2C possible metal-binding domain (IPR007209),ABC transporter%2C ABCE (IPR013283),ABC transporter%2C conserved site (IPR017871),4Fe-4S ferredoxin%2C iron-sulpur binding domain (IPR017896),4Fe-4S ferredoxin%2C iron-sulphur binding%2C conserved site (IPR017900);NIAS_FLcDNA=J033126O11;Oryzabase=11974;TENOR=Os11t0546000-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	20129027	20129190	.	+	.	Parent=Os11t0546000-01
Chr11	irgsp1_rep	CDS	20129191	20129293	.	+	0	Parent=Os11t0546000-01
Chr11	irgsp1_rep	CDS	20129732	20129817	.	+	2	Parent=Os11t0546000-01
Chr11	irgsp1_rep	CDS	20129912	20130009	.	+	0	Parent=Os11t0546000-01
Chr11	irgsp1_rep	CDS	20130130	20130247	.	+	1	Parent=Os11t0546000-01
Chr11	irgsp1_rep	CDS	20130380	20130469	.	+	0	Parent=Os11t0546000-01
Chr11	irgsp1_rep	CDS	20130950	20131254	.	+	0	Parent=Os11t0546000-01
Chr11	irgsp1_rep	CDS	20131342	20131537	.	+	1	Parent=Os11t0546000-01
Chr11	irgsp1_rep	CDS	20131615	20131797	.	+	0	Parent=Os11t0546000-01
Chr11	irgsp1_rep	CDS	20131893	20132162	.	+	0	Parent=Os11t0546000-01
Chr11	irgsp1_rep	CDS	20133086	20133331	.	+	0	Parent=Os11t0546000-01
Chr11	irgsp1_rep	CDS	20133576	20133695	.	+	0	Parent=Os11t0546000-01
Chr11	irgsp1_rep	three_prime_UTR	20133696	20133710	.	+	.	Parent=Os11t0546000-01
Chr11	irgsp1_rep	three_prime_UTR	20133813	20134231	.	+	.	Parent=Os11t0546000-01
Chr11	irgsp1_rep	mRNA	20129081	20134222	.	+	.	ID=Os11t0546000-02;Name=Os11t0546000-02;Locus_id=Os11g0546000;CGSNL Gene Symbol=ABCE2;CGSNL Gene Name=ABC TRANSPORTER E FAMILY MEMBER 2;Oryzabase Gene Symbol Synonym(s)=OsABCE2%2C RLI;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCE subgroup member 2%2C RNase L inhibitor;Note=Similar to RNase L inhibitor-like protein.;Transcript_evidence=AK102362 (DDBJ%2C Best hit);ORF_evidence=Q8L8I4 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=4Fe-4S binding domain (IPR001450),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),RNase L inhibitor RLI%2C possible metal-binding domain (IPR007209),ABC transporter%2C ABCE (IPR013283),ABC transporter%2C conserved site (IPR017871),4Fe-4S ferredoxin%2C iron-sulpur binding domain (IPR017896),4Fe-4S ferredoxin%2C iron-sulphur binding%2C conserved site (IPR017900);NIAS_FLcDNA=J033091J01;Oryzabase=11974;TENOR=Os11t0546000-02;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	20129081	20129190	.	+	.	Parent=Os11t0546000-02
Chr11	irgsp1_rep	CDS	20129191	20129293	.	+	0	Parent=Os11t0546000-02
Chr11	irgsp1_rep	CDS	20129732	20129817	.	+	2	Parent=Os11t0546000-02
Chr11	irgsp1_rep	CDS	20129912	20130009	.	+	0	Parent=Os11t0546000-02
Chr11	irgsp1_rep	CDS	20130130	20130247	.	+	1	Parent=Os11t0546000-02
Chr11	irgsp1_rep	CDS	20130380	20130469	.	+	0	Parent=Os11t0546000-02
Chr11	irgsp1_rep	CDS	20130950	20131254	.	+	0	Parent=Os11t0546000-02
Chr11	irgsp1_rep	CDS	20131342	20131537	.	+	1	Parent=Os11t0546000-02
Chr11	irgsp1_rep	CDS	20131615	20131797	.	+	0	Parent=Os11t0546000-02
Chr11	irgsp1_rep	CDS	20131893	20132162	.	+	0	Parent=Os11t0546000-02
Chr11	irgsp1_rep	CDS	20133086	20133331	.	+	0	Parent=Os11t0546000-02
Chr11	irgsp1_rep	CDS	20133576	20133695	.	+	0	Parent=Os11t0546000-02
Chr11	irgsp1_rep	three_prime_UTR	20133696	20133710	.	+	.	Parent=Os11t0546000-02
Chr11	irgsp1_rep	three_prime_UTR	20133813	20134222	.	+	.	Parent=Os11t0546000-02
Chr11	irgsp1_rep	mRNA	20136228	20140598	.	+	.	ID=Os11t0546100-01;Name=Os11t0546100-01;Locus_id=Os11g0546100;Oryzabase Gene Symbol Synonym(s)=OsGPCR;Note=Transmembrane receptor%2C eukaryota domain containing protein.;Transcript_evidence=AK068611 (DDBJ%2C Best hit);ORF_evidence=A2Q492 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Transmembrane receptor%2C eukaryota (IPR009637);NIAS_FLcDNA=J013157H23;Oryzabase=9469;Expression=AK068611;TENOR=Os11t0546100-01;KEGG=Os11t0546100-01
Chr11	irgsp1_rep	five_prime_UTR	20136228	20136484	.	+	.	Parent=Os11t0546100-01
Chr11	irgsp1_rep	CDS	20136485	20136690	.	+	0	Parent=Os11t0546100-01
Chr11	irgsp1_rep	CDS	20137570	20138506	.	+	1	Parent=Os11t0546100-01
Chr11	irgsp1_rep	CDS	20139060	20139155	.	+	0	Parent=Os11t0546100-01
Chr11	irgsp1_rep	CDS	20139698	20139834	.	+	0	Parent=Os11t0546100-01
Chr11	irgsp1_rep	CDS	20140068	20140236	.	+	1	Parent=Os11t0546100-01
Chr11	irgsp1_rep	three_prime_UTR	20140237	20140598	.	+	.	Parent=Os11t0546100-01
Chr11	irgsp1_rep	mRNA	20136388	20140232	.	-	.	ID=Os11t0546150-00;Name=Os11t0546150-00;Locus_id=Os11g0546150;Note=Hypothetical protein.;Transcript_evidence=tplb0043d02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0546150-00
Chr11	irgsp1_rep	five_prime_UTR	20140059	20140232	.	-	.	Parent=Os11t0546150-00
Chr11	irgsp1_rep	five_prime_UTR	20139680	20139825	.	-	.	Parent=Os11t0546150-00
Chr11	irgsp1_rep	five_prime_UTR	20139057	20139139	.	-	.	Parent=Os11t0546150-00
Chr11	irgsp1_rep	CDS	20139040	20139056	.	-	0	Parent=Os11t0546150-00
Chr11	irgsp1_rep	CDS	20138062	20138491	.	-	1	Parent=Os11t0546150-00
Chr11	irgsp1_rep	three_prime_UTR	20137564	20138061	.	-	.	Parent=Os11t0546150-00
Chr11	irgsp1_rep	three_prime_UTR	20136388	20136681	.	-	.	Parent=Os11t0546150-00
Chr11	irgsp1_rep	mRNA	20141197	20143526	.	-	.	ID=Os11t0546200-01;Name=Os11t0546200-01;Locus_id=Os11g0546200;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK241788 (DDBJ%2C Best hit);ORF_evidence=NP_198545.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J065207I24;TENOR=Os11t0546200-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	20143236	20143526	.	-	.	Parent=Os11t0546200-01
Chr11	irgsp1_rep	CDS	20143164	20143235	.	-	0	Parent=Os11t0546200-01
Chr11	irgsp1_rep	CDS	20143005	20143041	.	-	0	Parent=Os11t0546200-01
Chr11	irgsp1_rep	CDS	20142658	20142731	.	-	2	Parent=Os11t0546200-01
Chr11	irgsp1_rep	CDS	20142446	20142539	.	-	0	Parent=Os11t0546200-01
Chr11	irgsp1_rep	CDS	20142243	20142325	.	-	2	Parent=Os11t0546200-01
Chr11	irgsp1_rep	CDS	20141926	20142096	.	-	0	Parent=Os11t0546200-01
Chr11	irgsp1_rep	three_prime_UTR	20141896	20141925	.	-	.	Parent=Os11t0546200-01
Chr11	irgsp1_rep	three_prime_UTR	20141197	20141790	.	-	.	Parent=Os11t0546200-01
Chr11	irgsp1_rep	mRNA	20144609	20147897	.	-	.	ID=Os11t0546300-01;Name=Os11t0546300-01;Locus_id=Os11g0546300;Oryzabase Gene Symbol Synonym(s)=OspPLAV%2C pPLAV;Oryzabase Gene Name Synonym(s)=Patatin-related phospholipase A V;Note=Patatin family protein.;Transcript_evidence=AK121962 (DDBJ%2C Best hit);ORF_evidence=A2Q497 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: metabolic process (GO:0008152);InterPro=Patatin/Phospholipase A2-related (IPR002641),Acyl transferase/acyl hydrolase/lysophospholipase (IPR016035);NIAS_FLcDNA=J033108B06;Oryzabase=19879;Expression=AK121962;TENOR=Os11t0546300-01;KEGG=Os11t0546300-01
Chr11	irgsp1_rep	five_prime_UTR	20147862	20147897	.	-	.	Parent=Os11t0546300-01
Chr11	irgsp1_rep	CDS	20147421	20147861	.	-	0	Parent=Os11t0546300-01
Chr11	irgsp1_rep	CDS	20146717	20146860	.	-	0	Parent=Os11t0546300-01
Chr11	irgsp1_rep	CDS	20146316	20146388	.	-	0	Parent=Os11t0546300-01
Chr11	irgsp1_rep	CDS	20146090	20146195	.	-	2	Parent=Os11t0546300-01
Chr11	irgsp1_rep	CDS	20145899	20145995	.	-	1	Parent=Os11t0546300-01
Chr11	irgsp1_rep	CDS	20145107	20145202	.	-	0	Parent=Os11t0546300-01
Chr11	irgsp1_rep	CDS	20144878	20145024	.	-	0	Parent=Os11t0546300-01
Chr11	irgsp1_rep	three_prime_UTR	20144609	20144877	.	-	.	Parent=Os11t0546300-01
Chr11	irgsp1_rep	mRNA	20147243	20148183	.	+	.	ID=Os11t0546401-00;Name=Os11t0546401-00;Locus_id=Os11g0546401;Note=Hypothetical gene.;Transcript_evidence=CT841800 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os11t0546401-00;KEGG=Os11t0546401-00
Chr11	irgsp1_rep	five_prime_UTR	20147243	20147745	.	+	.	Parent=Os11t0546401-00
Chr11	irgsp1_rep	CDS	20147746	20147973	.	+	0	Parent=Os11t0546401-00
Chr11	irgsp1_rep	three_prime_UTR	20147974	20148183	.	+	.	Parent=Os11t0546401-00
Chr11	irgsp1_rep	mRNA	20152474	20153947	.	-	.	ID=Os11t0546500-00;Name=Os11t0546500-00;Locus_id=Os11g0546500;Oryzabase Gene Symbol Synonym(s)=OsGT6;Oryzabase Gene Name Synonym(s)=glycosyltransferase 6;Note=Galactosyl transferase family protein.;Transcript_evidence=AK374683 (DDBJ);ORF_evidence=NP_001105164.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=Galactosyl transferase (IPR008630);Oryzabase=15275;TENOR=Os11t0546500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	20152496	20153947	.	-	0	Parent=Os11t0546500-00
Chr11	irgsp1_rep	three_prime_UTR	20152474	20152495	.	-	.	Parent=Os11t0546500-00
Chr11	irgsp1_rep	mRNA	20174656	20176341	.	-	.	ID=Os11t0546600-00;Name=Os11t0546600-00;Locus_id=Os11g0546600;Note=Similar to phospholipase A2.;Transcript_evidence=CT835705 (DDBJ%2C Best hit);ORF_evidence=NP_001150728.1 (RefSeq);GO=Biological Process: phospholipid metabolic process (GO:0006644),Biological Process: lipid catabolic process (GO:0016042),Molecular Function: phospholipase A2 activity (GO:0004623);InterPro=Phospholipase A2%2C active site (IPR013090),Phospholipase A2 (IPR016090);TENOR=Os11t0546600-00;KEGG=Os11t0546600-00 (EC:3.1.1.4)
Chr11	irgsp1_rep	five_prime_UTR	20176300	20176341	.	-	.	Parent=Os11t0546600-00
Chr11	irgsp1_rep	CDS	20176162	20176299	.	-	0	Parent=Os11t0546600-00
Chr11	irgsp1_rep	CDS	20175989	20176037	.	-	0	Parent=Os11t0546600-00
Chr11	irgsp1_rep	CDS	20175737	20175862	.	-	2	Parent=Os11t0546600-00
Chr11	irgsp1_rep	CDS	20174792	20174973	.	-	2	Parent=Os11t0546600-00
Chr11	irgsp1_rep	three_prime_UTR	20174656	20174791	.	-	.	Parent=Os11t0546600-00
Chr11	irgsp1_rep	mRNA	20178235	20178996	.	-	.	ID=Os11t0546750-00;Name=Os11t0546750-00;Locus_id=Os11g0546750;Note=Hypothetical gene.;Transcript_evidence=EU975106 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0546750-00;KEGG=Os11t0546750-00
Chr11	irgsp1_rep	five_prime_UTR	20178995	20178996	.	-	.	Parent=Os11t0546750-00
Chr11	irgsp1_rep	CDS	20178569	20178994	.	-	0	Parent=Os11t0546750-00
Chr11	irgsp1_rep	three_prime_UTR	20178235	20178568	.	-	.	Parent=Os11t0546750-00
Chr11	irgsp1_rep	mRNA	20178469	20181426	.	+	.	ID=Os11t0546900-01;Name=Os11t0546900-01;Locus_id=Os11g0546900;CGSNL Gene Symbol=GF14D;CGSNL Gene Name=G-BOX FACTOR 14-3-3D PROTEIN;Oryzabase Gene Symbol Synonym(s)=GF14d%2C OsGF14d%2C Os14-3-3%2C 14-3-3d;Oryzabase Gene Name Synonym(s)=G-box factor 14-3-3d protein;Note=Similar to TaWIN1.;Transcript_evidence=AK101580 (DDBJ%2C Best hit),AK070548 (DDBJ%2C Best hit);ORF_evidence=Q2R2W2 (UniProt);GO=Molecular Function: protein domain specific binding (GO:0019904);InterPro=14-3-3 protein (IPR000308),14-3-3 protein%2C conserved site (IPR023409),14-3-3 domain (IPR023410);NIAS_FLcDNA=J033050N17,J023055G11;Oryzabase=11411;Expression=AK101580;TENOR=Os11t0546900-01;KEGG=Os11t0546900-01
Chr11	irgsp1_rep	five_prime_UTR	20178469	20178574	.	+	.	Parent=Os11t0546900-01
Chr11	irgsp1_rep	CDS	20178575	20178993	.	+	0	Parent=Os11t0546900-01
Chr11	irgsp1_rep	CDS	20179501	20179579	.	+	1	Parent=Os11t0546900-01
Chr11	irgsp1_rep	CDS	20179685	20179807	.	+	0	Parent=Os11t0546900-01
Chr11	irgsp1_rep	CDS	20180775	20180891	.	+	0	Parent=Os11t0546900-01
Chr11	irgsp1_rep	CDS	20180974	20181033	.	+	0	Parent=Os11t0546900-01
Chr11	irgsp1_rep	three_prime_UTR	20181034	20181426	.	+	.	Parent=Os11t0546900-01
Chr11	irgsp1_rep	mRNA	20182486	20187327	.	-	.	ID=Os11t0547000-01;Name=Os11t0547000-01;Locus_id=Os11g0547000;RAP-DB Gene Symbol Synonym(s)=FKF1%2C OsFKF1%2C OsFbox609%2C Os_F0370;RAP-DB Gene Name Synonym(s)=FLAVIN-BINDING%2C KELCH REPEAT%2C F BOX 1%2C F-box protein 609%2C "FLAVIN-BINDING%2C KELCH REPEAT%2C F-BOX 1";CGSNL Gene Symbol=FKF1;CGSNL Gene Name=FLAVIN-BINDING%2C KELCH REPEAT%2C F BOX 1;Oryzabase Gene Symbol Synonym(s)=OsFbox609%2C Os_F0370%2C OsFKF1;Oryzabase Gene Name Synonym(s)=F-box protein 609%2C "FLAVIN-BINDING%2C KELCH REPEAT%2C F-BOX 1";Note=Autonomous floral activator%2C Promotion of flowering;Transcript_evidence=AK100677;ORF_evidence=Q2R2W1;GO=Biological Process: regulation of circadian rhythm (GO:0042752),Molecular Function: protein binding (GO:0005515);InterPro=ZEITLUPE family (IPR031118),PAS domain (IPR000014),F-box domain (IPR001810),Kelch-type beta propeller (IPR015915),Galactose oxidase/kelch%2C beta-propeller (IPR011043),Kelch repeat type 2 (IPR011498);NIAS_FLcDNA=J023113D18;Manual Curation=June 5%2C 2015;Literature_PMID=25850808;Oryzabase=8825;Expression=AK100677;TENOR=Os11t0547000-01;KEGG=Os11t0547000-01
Chr11	irgsp1_rep	five_prime_UTR	20187235	20187327	.	-	.	Parent=Os11t0547000-01
Chr11	irgsp1_rep	CDS	20186930	20187234	.	-	0	Parent=Os11t0547000-01
Chr11	irgsp1_rep	CDS	20182690	20184277	.	-	1	Parent=Os11t0547000-01
Chr11	irgsp1_rep	three_prime_UTR	20182486	20182689	.	-	.	Parent=Os11t0547000-01
Chr11	irgsp1_rep	mRNA	20182477	20186313	.	-	.	ID=Os11t0547000-02;Name=Os11t0547000-02;Locus_id=Os11g0547000;CGSNL Gene Symbol=FKF1;CGSNL Gene Name=FLAVIN-BINDING%2C KELCH REPEAT%2C F BOX 1;Oryzabase Gene Symbol Synonym(s)=OsFbox609%2C Os_F0370%2C OsFKF1;Oryzabase Gene Name Synonym(s)=F-box protein 609%2C "FLAVIN-BINDING%2C KELCH REPEAT%2C F-BOX 1";Note=Hypothetical conserved gene.;Transcript_evidence=AK065369 (DDBJ%2C Best hit);ORF_evidence=A7YJG9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Kelch repeat type 1 (IPR006652),Galactose oxidase/kelch%2C beta-propeller (IPR011043),Kelch repeat type 2 (IPR011498),Kelch-type beta propeller (IPR015915),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013023A04;Oryzabase=8825;Expression=AK065369;TENOR=Os11t0547000-02;KEGG=Os11t0547000-02
Chr11	irgsp1_rep	five_prime_UTR	20184337	20186313	.	-	.	Parent=Os11t0547000-02
Chr11	irgsp1_rep	CDS	20182690	20184336	.	-	0	Parent=Os11t0547000-02
Chr11	irgsp1_rep	three_prime_UTR	20182477	20182689	.	-	.	Parent=Os11t0547000-02
Chr11	irgsp1_rep	mRNA	20190771	20193218	.	+	.	ID=Os11t0547800-00;Name=Os11t0547800-00;Locus_id=Os11g0547800;Note=Conserved hypothetical protein.;Transcript_evidence=AK377163 (DDBJ);ORF_evidence=B9GB48 (UniProt);TENOR=Os11t0547800-00
Chr11	irgsp1_rep	CDS	20190771	20191370	.	+	0	Parent=Os11t0547800-00
Chr11	irgsp1_rep	CDS	20192886	20193218	.	+	0	Parent=Os11t0547800-00
Chr11	irgsp1_rep	mRNA	20239369	20240115	.	+	.	ID=Os11t0548600-00;Name=Os11t0548600-00;Locus_id=Os11g0548600;Oryzabase Gene Symbol Synonym(s)=LYP2%2C Os-LYP2;Oryzabase Gene Name Synonym(s)=lysin motif-containing protein 2;Note=Similar to LysM domain containing protein.;Transcript_evidence=AK360874 (DDBJ);ORF_evidence=Q2R2V0 (UniProt);GO=Biological Process: cell wall macromolecule catabolic process (GO:0016998);InterPro=Peptidoglycan-binding Lysin subgroup (IPR002482),Peptidoglycan-binding lysin domain (IPR018392);Oryzabase=11160;TENOR=Os11t0548600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	20239369	20240115	.	+	0	Parent=Os11t0548600-00
Chr11	irgsp1_rep	mRNA	20270483	20275892	.	+	.	ID=Os11t0549300-00;Name=Os11t0549300-00;Locus_id=Os11g0549300;CGSNL Gene Symbol=RLCK330;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 330;Oryzabase Gene Symbol Synonym(s)=OsLysM-RLK8%2C OsRLCK330;Oryzabase Gene Name Synonym(s)=LysM receptor-like kinase 8;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=FP096992 (DDBJ);ORF_evidence=Q2R2U0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=10927;TENOR=Os11t0549300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	20270483	20270671	.	+	0	Parent=Os11t0549300-00
Chr11	irgsp1_rep	CDS	20271519	20271729	.	+	0	Parent=Os11t0549300-00
Chr11	irgsp1_rep	CDS	20271820	20272057	.	+	2	Parent=Os11t0549300-00
Chr11	irgsp1_rep	CDS	20272222	20272375	.	+	1	Parent=Os11t0549300-00
Chr11	irgsp1_rep	CDS	20275537	20275890	.	+	0	Parent=Os11t0549300-00
Chr11	irgsp1_rep	three_prime_UTR	20275891	20275892	.	+	.	Parent=Os11t0549300-00
Chr11	irgsp1_rep	mRNA	20280913	20281173	.	-	.	ID=Os11t0549401-00;Name=Os11t0549401-00;Locus_id=Os11g0549401;Note=Hypothetical gene.;Transcript_evidence=DQ434846 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os11t0549401-00;KEGG=Os11t0549401-00
Chr11	irgsp1_rep	CDS	20280913	20281173	.	-	0	Parent=Os11t0549401-00
Chr11	irgsp1_rep	mRNA	20312783	20313633	.	-	.	ID=Os11t0549469-00;Name=Os11t0549469-00;Locus_id=Os11g0549469;Note=Non-protein coding transcript.;Transcript_evidence=FP096127 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0549469-00
Chr11	irgsp1_rep	exon	20313285	20313633	.	-	.	Parent=Os11t0549469-00
Chr11	irgsp1_rep	exon	20312783	20313021	.	-	.	Parent=Os11t0549469-00
Chr11	irgsp1_rep	mRNA	20315329	20316947	.	-	.	ID=Os11t0549537-00;Name=Os11t0549537-00;Locus_id=Os11g0549537;Note=Similar to RNA recognition motif containing protein.;Transcript_evidence=EU970725 (DDBJ);ORF_evidence=NP_001149104.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Aldo/keto reductase (IPR001395),Nucleotide-binding%2C alpha-beta plait (IPR012677);TENOR=Os11t0549537-00
Chr11	irgsp1_rep	CDS	20316795	20316947	.	-	0	Parent=Os11t0549537-00
Chr11	irgsp1_rep	CDS	20316411	20316514	.	-	0	Parent=Os11t0549537-00
Chr11	irgsp1_rep	CDS	20316253	20316328	.	-	1	Parent=Os11t0549537-00
Chr11	irgsp1_rep	CDS	20316016	20316099	.	-	0	Parent=Os11t0549537-00
Chr11	irgsp1_rep	CDS	20315329	20315640	.	-	0	Parent=Os11t0549537-00
Chr11	irgsp1_rep	mRNA	20321331	20326035	.	+	.	ID=Os11t0549605-00;Name=Os11t0549605-00;Locus_id=Os11g0549605;CGSNL Gene Symbol=UBP14-3;CGSNL Gene Name=UBIQUITIN-SPECIFIC PROCESSING PROTEASE 14-3;Oryzabase Gene Symbol Synonym(s)=OsUBP14-3;Oryzabase Gene Name Synonym(s)=ubiquitin-specific processing protease 14-3;Note=Domain of unknown function DUF629 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R2T8 (UniProt);InterPro=Domain of unknown function DUF629 (IPR006865);Oryzabase=22899;TENOR=Os11t0549605-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	20321331	20322773	.	+	0	Parent=Os11t0549605-00
Chr11	irgsp1_rep	CDS	20322877	20323005	.	+	0	Parent=Os11t0549605-00
Chr11	irgsp1_rep	CDS	20323091	20323162	.	+	0	Parent=Os11t0549605-00
Chr11	irgsp1_rep	CDS	20323938	20324213	.	+	0	Parent=Os11t0549605-00
Chr11	irgsp1_rep	CDS	20324305	20324413	.	+	0	Parent=Os11t0549605-00
Chr11	irgsp1_rep	CDS	20325000	20325133	.	+	2	Parent=Os11t0549605-00
Chr11	irgsp1_rep	CDS	20325729	20325815	.	+	0	Parent=Os11t0549605-00
Chr11	irgsp1_rep	CDS	20325910	20326035	.	+	0	Parent=Os11t0549605-00
Chr11	irgsp1_rep	mRNA	20327872	20332134	.	+	.	ID=Os11t0549610-00;Name=Os11t0549610-00;Locus_id=Os11g0549610;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B8BKZ8 (UniProt);InterPro=Domain of unknown function DUF629 (IPR006865);TENOR=Os11t0549610-00;KEGG=Os11t0549610-00
Chr11	irgsp1_rep	CDS	20327872	20328768	.	+	0	Parent=Os11t0549610-00
Chr11	irgsp1_rep	CDS	20328871	20328999	.	+	0	Parent=Os11t0549610-00
Chr11	irgsp1_rep	CDS	20329088	20329180	.	+	0	Parent=Os11t0549610-00
Chr11	irgsp1_rep	CDS	20329268	20329468	.	+	0	Parent=Os11t0549610-00
Chr11	irgsp1_rep	CDS	20330258	20330366	.	+	0	Parent=Os11t0549610-00
Chr11	irgsp1_rep	CDS	20330987	20331120	.	+	2	Parent=Os11t0549610-00
Chr11	irgsp1_rep	CDS	20332048	20332134	.	+	0	Parent=Os11t0549610-00
Chr11	irgsp1_rep	mRNA	20336764	20340697	.	-	.	ID=Os11t0549615-01;Name=Os11t0549615-01;Locus_id=Os11g0549615;CGSNL Gene Symbol=PAP3A;CGSNL Gene Name=PURPLE ACID PHOSPHATASE 3A;Oryzabase Gene Symbol Synonym(s)=OsPAP3a;Oryzabase Gene Name Synonym(s)=purple acid phosphatase 3a;Note=Metallophosphoesterase domain containing protein.;Transcript_evidence=AK069660 (DDBJ%2C Best hit);ORF_evidence=B6TE04 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Metallophosphoesterase domain (IPR004843);NIAS_FLcDNA=J023031L04;Oryzabase=11376;TENOR=Os11t0549615-01;KEGG=Os11t0549615-01 (EC:3.1.3.2)
Chr11	irgsp1_rep	five_prime_UTR	20340607	20340697	.	-	.	Parent=Os11t0549615-01
Chr11	irgsp1_rep	CDS	20340430	20340606	.	-	0	Parent=Os11t0549615-01
Chr11	irgsp1_rep	CDS	20338757	20338913	.	-	0	Parent=Os11t0549615-01
Chr11	irgsp1_rep	CDS	20338310	20338417	.	-	2	Parent=Os11t0549615-01
Chr11	irgsp1_rep	CDS	20337989	20338116	.	-	2	Parent=Os11t0549615-01
Chr11	irgsp1_rep	CDS	20337741	20337869	.	-	0	Parent=Os11t0549615-01
Chr11	irgsp1_rep	CDS	20337325	20337392	.	-	0	Parent=Os11t0549615-01
Chr11	irgsp1_rep	CDS	20337100	20337217	.	-	1	Parent=Os11t0549615-01
Chr11	irgsp1_rep	three_prime_UTR	20336764	20337099	.	-	.	Parent=Os11t0549615-01
Chr11	irgsp1_rep	mRNA	20343336	20349189	.	-	.	ID=Os11t0549620-01;Name=Os11t0549620-01;Locus_id=Os11g0549620;CGSNL Gene Symbol=PAP7;CGSNL Gene Name=PURPLE ACID PHOSPHATASE 7;Oryzabase Gene Symbol Synonym(s)=OsPAP7;Oryzabase Gene Name Synonym(s)=purple acid phosphatase 7;Note=Similar to Purple acid phosphatase.;Transcript_evidence=AK061321 (DDBJ%2C Best hit),AK106004 (DDBJ%2C Best hit);ORF_evidence=NP_001149277.1 (RefSeq);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Metallophosphoesterase domain (IPR004843);NIAS_FLcDNA=006-302-F02,001-206-A04;Oryzabase=11379;TENOR=Os11t0549620-01
Chr11	irgsp1_rep	five_prime_UTR	20349095	20349189	.	-	.	Parent=Os11t0549620-01
Chr11	irgsp1_rep	CDS	20348897	20349094	.	-	0	Parent=Os11t0549620-01
Chr11	irgsp1_rep	CDS	20345207	20345366	.	-	0	Parent=Os11t0549620-01
Chr11	irgsp1_rep	CDS	20344795	20344905	.	-	2	Parent=Os11t0549620-01
Chr11	irgsp1_rep	CDS	20344539	20344657	.	-	2	Parent=Os11t0549620-01
Chr11	irgsp1_rep	CDS	20344251	20344379	.	-	0	Parent=Os11t0549620-01
Chr11	irgsp1_rep	CDS	20344047	20344114	.	-	0	Parent=Os11t0549620-01
Chr11	irgsp1_rep	CDS	20343569	20343776	.	-	1	Parent=Os11t0549620-01
Chr11	irgsp1_rep	three_prime_UTR	20343336	20343568	.	-	.	Parent=Os11t0549620-01
Chr11	irgsp1_rep	mRNA	20359909	20368828	.	+	.	ID=Os11t0549635-00;Name=Os11t0549635-00;Locus_id=Os11g0549635;Note=Similar to ABC1 family protein.;Transcript_evidence=BT064100 (DDBJ);ORF_evidence=Q2R2T2 (UniProt);GO=Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=ABC-1 (IPR004147),Twin-arginine translocation pathway%2C signal sequence (IPR006311),Protein kinase-like domain (IPR011009);TENOR=Os11t0549635-00;KEGG=Os11t0549635-00
Chr11	irgsp1_rep	five_prime_UTR	20359909	20359915	.	+	.	Parent=Os11t0549635-00
Chr11	irgsp1_rep	CDS	20359916	20360068	.	+	0	Parent=Os11t0549635-00
Chr11	irgsp1_rep	CDS	20360185	20360268	.	+	0	Parent=Os11t0549635-00
Chr11	irgsp1_rep	CDS	20360991	20361131	.	+	0	Parent=Os11t0549635-00
Chr11	irgsp1_rep	CDS	20361220	20361290	.	+	0	Parent=Os11t0549635-00
Chr11	irgsp1_rep	CDS	20362639	20362732	.	+	1	Parent=Os11t0549635-00
Chr11	irgsp1_rep	CDS	20363615	20363692	.	+	0	Parent=Os11t0549635-00
Chr11	irgsp1_rep	CDS	20364432	20364498	.	+	0	Parent=Os11t0549635-00
Chr11	irgsp1_rep	CDS	20365086	20365171	.	+	2	Parent=Os11t0549635-00
Chr11	irgsp1_rep	CDS	20365871	20365921	.	+	0	Parent=Os11t0549635-00
Chr11	irgsp1_rep	CDS	20366183	20366230	.	+	0	Parent=Os11t0549635-00
Chr11	irgsp1_rep	CDS	20366906	20367026	.	+	0	Parent=Os11t0549635-00
Chr11	irgsp1_rep	CDS	20367454	20367634	.	+	2	Parent=Os11t0549635-00
Chr11	irgsp1_rep	CDS	20368143	20368280	.	+	1	Parent=Os11t0549635-00
Chr11	irgsp1_rep	CDS	20368371	20368483	.	+	1	Parent=Os11t0549635-00
Chr11	irgsp1_rep	CDS	20368596	20368828	.	+	2	Parent=Os11t0549635-00
Chr11	irgsp1_rep	mRNA	20369301	20372451	.	-	.	ID=Os11t0549650-00;Name=Os11t0549650-00;Locus_id=Os11g0549650;Note=Mitochondrial matrix Mmp37 domain containing protein.;Transcript_evidence=AK365583 (DDBJ);ORF_evidence=B8BL00 (UniProt);InterPro=Mitochondrial matrix Mmp37 (IPR015222);TENOR=Os11t0549650-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	20371891	20372451	.	-	0	Parent=Os11t0549650-00
Chr11	irgsp1_rep	CDS	20371687	20371746	.	-	0	Parent=Os11t0549650-00
Chr11	irgsp1_rep	CDS	20371504	20371572	.	-	0	Parent=Os11t0549650-00
Chr11	irgsp1_rep	CDS	20371287	20371379	.	-	0	Parent=Os11t0549650-00
Chr11	irgsp1_rep	CDS	20370981	20371085	.	-	0	Parent=Os11t0549650-00
Chr11	irgsp1_rep	CDS	20370814	20370891	.	-	0	Parent=Os11t0549650-00
Chr11	irgsp1_rep	CDS	20370056	20370185	.	-	0	Parent=Os11t0549650-00
Chr11	irgsp1_rep	CDS	20369782	20369783	.	-	2	Parent=Os11t0549650-00
Chr11	irgsp1_rep	three_prime_UTR	20369690	20369781	.	-	.	Parent=Os11t0549650-00
Chr11	irgsp1_rep	three_prime_UTR	20369301	20369620	.	-	.	Parent=Os11t0549650-00
Chr11	irgsp1_rep	mRNA	20372778	20376120	.	-	.	ID=Os11t0549655-01;Name=Os11t0549655-01;Locus_id=Os11g0549655;Note=Similar to maf-like protein CV_0124.;Transcript_evidence=AK241350 (DDBJ%2C Best hit);ORF_evidence=NP_001152030.1 (RefSeq);GO=Cellular Component: cytoplasm (GO:0005737);InterPro=Maf-like protein (IPR003697);NIAS_FLcDNA=J065148G18;TENOR=Os11t0549655-01;KEGG=Os11t0549655-01
Chr11	irgsp1_rep	five_prime_UTR	20376083	20376120	.	-	.	Parent=Os11t0549655-01
Chr11	irgsp1_rep	CDS	20376041	20376082	.	-	0	Parent=Os11t0549655-01
Chr11	irgsp1_rep	CDS	20375862	20375933	.	-	0	Parent=Os11t0549655-01
Chr11	irgsp1_rep	CDS	20375659	20375733	.	-	0	Parent=Os11t0549655-01
Chr11	irgsp1_rep	CDS	20375123	20375206	.	-	0	Parent=Os11t0549655-01
Chr11	irgsp1_rep	CDS	20374297	20374366	.	-	0	Parent=Os11t0549655-01
Chr11	irgsp1_rep	CDS	20374112	20374203	.	-	2	Parent=Os11t0549655-01
Chr11	irgsp1_rep	CDS	20373508	20373549	.	-	0	Parent=Os11t0549655-01
Chr11	irgsp1_rep	CDS	20373248	20373328	.	-	0	Parent=Os11t0549655-01
Chr11	irgsp1_rep	CDS	20373088	20373159	.	-	0	Parent=Os11t0549655-01
Chr11	irgsp1_rep	three_prime_UTR	20372778	20373087	.	-	.	Parent=Os11t0549655-01
Chr11	irgsp1_rep	mRNA	20381885	20383247	.	+	.	ID=Os11t0549665-01;Name=Os11t0549665-01;Locus_id=Os11g0549665;Note=Hypothetical conserved gene.;Transcript_evidence=AK072644 (DDBJ%2C Best hit);ORF_evidence=B9GB53 (UniProt);NIAS_FLcDNA=J023129J01;Oryzabase=19998;TENOR=Os11t0549665-01
Chr11	irgsp1_rep	five_prime_UTR	20381885	20382017	.	+	.	Parent=Os11t0549665-01
Chr11	irgsp1_rep	five_prime_UTR	20382157	20382171	.	+	.	Parent=Os11t0549665-01
Chr11	irgsp1_rep	CDS	20382172	20383247	.	+	0	Parent=Os11t0549665-01
Chr11	irgsp1_rep	mRNA	20381885	20385388	.	+	.	ID=Os11t0549665-02;Name=Os11t0549665-02;Locus_id=Os11g0549665;Note=Conserved hypothetical protein.;Transcript_evidence=AK106162 (DDBJ%2C Best hit),AK101587 (DDBJ%2C Best hit);ORF_evidence=B9GB53 (UniProt);NIAS_FLcDNA=001-208-B03,J033051A04;Oryzabase=19998;TENOR=Os11t0549665-02;KEGG=Os11t0549665-02
Chr11	irgsp1_rep	five_prime_UTR	20381885	20382017	.	+	.	Parent=Os11t0549665-02
Chr11	irgsp1_rep	five_prime_UTR	20382157	20382171	.	+	.	Parent=Os11t0549665-02
Chr11	irgsp1_rep	CDS	20382172	20383436	.	+	0	Parent=Os11t0549665-02
Chr11	irgsp1_rep	CDS	20383526	20383595	.	+	1	Parent=Os11t0549665-02
Chr11	irgsp1_rep	CDS	20385057	20385062	.	+	0	Parent=Os11t0549665-02
Chr11	irgsp1_rep	three_prime_UTR	20385063	20385388	.	+	.	Parent=Os11t0549665-02
Chr11	irgsp1_rep	mRNA	20382911	20385384	.	+	.	ID=Os11t0549665-03;Name=Os11t0549665-03;Locus_id=Os11g0549665;Note=Hypothetical conserved gene.;Transcript_evidence=AK061644 (DDBJ%2C Best hit);ORF_evidence=XP_002452678.1 (RefSeq);InterPro=Protein of unknown function DUF295 (IPR005174);NIAS_FLcDNA=001-036-B06;Oryzabase=19998;TENOR=Os11t0549665-03;KEGG=Os11t0549665-03
Chr11	irgsp1_rep	five_prime_UTR	20382911	20382912	.	+	.	Parent=Os11t0549665-03
Chr11	irgsp1_rep	CDS	20382913	20383436	.	+	0	Parent=Os11t0549665-03
Chr11	irgsp1_rep	CDS	20383526	20383595	.	+	1	Parent=Os11t0549665-03
Chr11	irgsp1_rep	CDS	20385057	20385062	.	+	0	Parent=Os11t0549665-03
Chr11	irgsp1_rep	three_prime_UTR	20385063	20385384	.	+	.	Parent=Os11t0549665-03
Chr11	irgsp1_rep	mRNA	20385810	20385869	.	-	.	ID=Os11t0549667-00;Name=Os11t0549667-00;Locus_id=Os11g0549667;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0549667-00
Chr11	irgsp1_rep	exon	20385810	20385869	.	-	.	Parent=Os11t0549667-00
Chr11	irgsp1_rep	mRNA	20386256	20388954	.	-	.	ID=Os11t0549670-01;Name=Os11t0549670-01;Locus_id=Os11g0549670;Note=Similar to Aspartate-semialdehyde dehydrogenase.;Transcript_evidence=AK120993 (DDBJ%2C Best hit);ORF_evidence=B6TWW1 (UniProt);NIAS_FLcDNA=J023043O03;TENOR=Os11t0549670-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	20388807	20388954	.	-	.	Parent=Os11t0549670-01
Chr11	irgsp1_rep	CDS	20387785	20388806	.	-	0	Parent=Os11t0549670-01
Chr11	irgsp1_rep	CDS	20387299	20387299	.	-	1	Parent=Os11t0549670-01
Chr11	irgsp1_rep	three_prime_UTR	20386712	20387298	.	-	.	Parent=Os11t0549670-01
Chr11	irgsp1_rep	three_prime_UTR	20386256	20386633	.	-	.	Parent=Os11t0549670-01
Chr11	irgsp1_rep	mRNA	20390259	20392225	.	-	.	ID=Os11t0549675-01;Name=Os11t0549675-01;Locus_id=Os11g0549675;Note=Similar to cDNA clone:001-208-B08%2C full insert sequence.;Transcript_evidence=AK121457 (DDBJ%2C Best hit);ORF_evidence=B7EZ16 (UniProt);NIAS_FLcDNA=J023143I23;TENOR=Os11t0549675-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	20391157	20392225	.	-	.	Parent=Os11t0549675-01
Chr11	irgsp1_rep	CDS	20390929	20391156	.	-	0	Parent=Os11t0549675-01
Chr11	irgsp1_rep	CDS	20390259	20390550	.	-	0	Parent=Os11t0549675-01
Chr11	irgsp1_rep	mRNA	20396869	20401822	.	+	.	ID=Os11t0549680-01;Name=Os11t0549680-01;Locus_id=Os11g0549680;Note=Similar to Zinc knuckle family protein%2C expressed.;Transcript_evidence=AK121354 (DDBJ%2C Best hit),AK067699 (DDBJ%2C Best hit);ORF_evidence=Q2R2S5 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Zinc finger%2C CCHC retroviral-type (IPR013084);NIAS_FLcDNA=J023122F17,J013116E21;TENOR=Os11t0549680-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	20396869	20397262	.	+	.	Parent=Os11t0549680-01
Chr11	irgsp1_rep	five_prime_UTR	20397658	20397679	.	+	.	Parent=Os11t0549680-01
Chr11	irgsp1_rep	CDS	20397680	20397729	.	+	0	Parent=Os11t0549680-01
Chr11	irgsp1_rep	CDS	20397808	20397949	.	+	1	Parent=Os11t0549680-01
Chr11	irgsp1_rep	CDS	20398199	20398240	.	+	0	Parent=Os11t0549680-01
Chr11	irgsp1_rep	three_prime_UTR	20398241	20399627	.	+	.	Parent=Os11t0549680-01
Chr11	irgsp1_rep	three_prime_UTR	20401284	20401822	.	+	.	Parent=Os11t0549680-01
Chr11	irgsp1_rep	mRNA	20408253	20415265	.	+	.	ID=Os11t0549686-00;Name=Os11t0549686-00;Locus_id=Os11g0549686;Note=Similar to ABC1 family protein.;Transcript_evidence=BT064100 (DDBJ);ORF_evidence=Q2R2T2 (UniProt);GO=Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=ABC-1 (IPR004147),Protein kinase-like domain (IPR011009);TENOR=Os11t0549686-00;KEGG=Os11t0549686-00
Chr11	irgsp1_rep	CDS	20408253	20408324	.	+	0	Parent=Os11t0549686-00
Chr11	irgsp1_rep	CDS	20408413	20408483	.	+	0	Parent=Os11t0549686-00
Chr11	irgsp1_rep	CDS	20409779	20409872	.	+	1	Parent=Os11t0549686-00
Chr11	irgsp1_rep	CDS	20410766	20410843	.	+	0	Parent=Os11t0549686-00
Chr11	irgsp1_rep	CDS	20411590	20411656	.	+	0	Parent=Os11t0549686-00
Chr11	irgsp1_rep	CDS	20412243	20412328	.	+	2	Parent=Os11t0549686-00
Chr11	irgsp1_rep	CDS	20413031	20413081	.	+	0	Parent=Os11t0549686-00
Chr11	irgsp1_rep	CDS	20413336	20413383	.	+	0	Parent=Os11t0549686-00
Chr11	irgsp1_rep	CDS	20414044	20414164	.	+	0	Parent=Os11t0549686-00
Chr11	irgsp1_rep	CDS	20414595	20415265	.	+	2	Parent=Os11t0549686-00
Chr11	irgsp1_rep	mRNA	20415224	20419205	.	-	.	ID=Os11t0549690-01;Name=Os11t0549690-01;Locus_id=Os11g0549690;Note=Hypothetical conserved gene.;Transcript_evidence=AK242764 (DDBJ%2C Best hit);ORF_evidence=Q2R2S3 (UniProt);InterPro=Mitochondrial matrix Mmp37 (IPR015222);NIAS_FLcDNA=J090052L05;TENOR=Os11t0549690-01;KEGG=Os11t0549690-01
Chr11	irgsp1_rep	five_prime_UTR	20419069	20419205	.	-	.	Parent=Os11t0549690-01
Chr11	irgsp1_rep	CDS	20418889	20419068	.	-	0	Parent=Os11t0549690-01
Chr11	irgsp1_rep	CDS	20418684	20418743	.	-	0	Parent=Os11t0549690-01
Chr11	irgsp1_rep	CDS	20418501	20418569	.	-	0	Parent=Os11t0549690-01
Chr11	irgsp1_rep	CDS	20418284	20418376	.	-	0	Parent=Os11t0549690-01
Chr11	irgsp1_rep	CDS	20418012	20418122	.	-	0	Parent=Os11t0549690-01
Chr11	irgsp1_rep	three_prime_UTR	20417851	20418011	.	-	.	Parent=Os11t0549690-01
Chr11	irgsp1_rep	three_prime_UTR	20417178	20417303	.	-	.	Parent=Os11t0549690-01
Chr11	irgsp1_rep	three_prime_UTR	20416808	20416901	.	-	.	Parent=Os11t0549690-01
Chr11	irgsp1_rep	three_prime_UTR	20415224	20416733	.	-	.	Parent=Os11t0549690-01
Chr11	irgsp1_rep	mRNA	20420039	20423566	.	-	.	ID=Os11t0549695-01;Name=Os11t0549695-01;Locus_id=Os11g0549695;Note=Maf-like protein family protein.;Transcript_evidence=AK060533 (DDBJ%2C Best hit);ORF_evidence=Q2R2T0 (UniProt);GO=Cellular Component: cytoplasm (GO:0005737);InterPro=Maf-like protein (IPR003697);NIAS_FLcDNA=001-021-A05;Expression=AK060533;TENOR=Os11t0549695-01;KEGG=Os11t0549695-01
Chr11	irgsp1_rep	five_prime_UTR	20423448	20423566	.	-	.	Parent=Os11t0549695-01
Chr11	irgsp1_rep	CDS	20423406	20423447	.	-	0	Parent=Os11t0549695-01
Chr11	irgsp1_rep	CDS	20423202	20423273	.	-	0	Parent=Os11t0549695-01
Chr11	irgsp1_rep	CDS	20423020	20423094	.	-	0	Parent=Os11t0549695-01
Chr11	irgsp1_rep	CDS	20422464	20422547	.	-	0	Parent=Os11t0549695-01
Chr11	irgsp1_rep	CDS	20421567	20421636	.	-	0	Parent=Os11t0549695-01
Chr11	irgsp1_rep	CDS	20421382	20421473	.	-	2	Parent=Os11t0549695-01
Chr11	irgsp1_rep	CDS	20420784	20420825	.	-	0	Parent=Os11t0549695-01
Chr11	irgsp1_rep	CDS	20420522	20420602	.	-	0	Parent=Os11t0549695-01
Chr11	irgsp1_rep	CDS	20420356	20420433	.	-	0	Parent=Os11t0549695-01
Chr11	irgsp1_rep	three_prime_UTR	20420039	20420355	.	-	.	Parent=Os11t0549695-01
Chr11	irgsp1_rep	mRNA	20426260	20432203	.	+	.	ID=Os11t0549700-01;Name=Os11t0549700-01;Locus_id=Os11g0549700;CGSNL Gene Symbol=DLN249;CGSNL Gene Name=DLN REPRESSOR 249;Oryzabase Gene Symbol Synonym(s)=OsDLN249;Oryzabase Gene Name Synonym(s)=DLN repressor 249%2C DLN motif protein 249;Note=Ankyrin domain containing protein.;Transcript_evidence=AK072007 (DDBJ%2C Best hit);ORF_evidence=Q2R2S1 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C DHHC-type%2C palmitoyltransferase (IPR001594),Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J013098F24;Oryzabase=23237;Expression=AK072007;TENOR=Os11t0549700-01;KEGG=Os11t0549700-01
Chr11	irgsp1_rep	five_prime_UTR	20426260	20426261	.	+	.	Parent=Os11t0549700-01
Chr11	irgsp1_rep	CDS	20426262	20426327	.	+	0	Parent=Os11t0549700-01
Chr11	irgsp1_rep	CDS	20426426	20426566	.	+	0	Parent=Os11t0549700-01
Chr11	irgsp1_rep	CDS	20427337	20427449	.	+	0	Parent=Os11t0549700-01
Chr11	irgsp1_rep	CDS	20428112	20428191	.	+	1	Parent=Os11t0549700-01
Chr11	irgsp1_rep	CDS	20428699	20428862	.	+	2	Parent=Os11t0549700-01
Chr11	irgsp1_rep	CDS	20429073	20429202	.	+	0	Parent=Os11t0549700-01
Chr11	irgsp1_rep	CDS	20429297	20429396	.	+	2	Parent=Os11t0549700-01
Chr11	irgsp1_rep	CDS	20429594	20429642	.	+	1	Parent=Os11t0549700-01
Chr11	irgsp1_rep	CDS	20429917	20429991	.	+	0	Parent=Os11t0549700-01
Chr11	irgsp1_rep	CDS	20430168	20430266	.	+	0	Parent=Os11t0549700-01
Chr11	irgsp1_rep	CDS	20430887	20430965	.	+	0	Parent=Os11t0549700-01
Chr11	irgsp1_rep	CDS	20431039	20431187	.	+	2	Parent=Os11t0549700-01
Chr11	irgsp1_rep	CDS	20431632	20431826	.	+	0	Parent=Os11t0549700-01
Chr11	irgsp1_rep	three_prime_UTR	20431827	20432203	.	+	.	Parent=Os11t0549700-01
Chr11	irgsp1_rep	mRNA	20433314	20437020	.	+	.	ID=Os11t0549900-01;Name=Os11t0549900-01;Locus_id=Os11g0549900;Note=Similar to tubulin alpha-6 chain.;Transcript_evidence=AK242473 (DDBJ%2C Best hit);ORF_evidence=B6SQW3 (UniProt);NIAS_FLcDNA=J080303C17;TENOR=Os11t0549900-01;KEGG=Os11t0549900-01
Chr11	irgsp1_rep	five_prime_UTR	20433314	20433358	.	+	.	Parent=Os11t0549900-01
Chr11	irgsp1_rep	CDS	20433359	20433742	.	+	0	Parent=Os11t0549900-01
Chr11	irgsp1_rep	CDS	20434484	20434591	.	+	0	Parent=Os11t0549900-01
Chr11	irgsp1_rep	CDS	20436740	20436862	.	+	0	Parent=Os11t0549900-01
Chr11	irgsp1_rep	three_prime_UTR	20436863	20437020	.	+	.	Parent=Os11t0549900-01
Chr11	irgsp1_rep	mRNA	20445822	20450284	.	-	.	ID=Os11t0550100-01;Name=Os11t0550100-01;Locus_id=Os11g0550100;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=AK103015 (DDBJ%2C Best hit);ORF_evidence=Q2R2R8 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J033116M08;TENOR=Os11t0550100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	20450168	20450284	.	-	.	Parent=Os11t0550100-01
Chr11	irgsp1_rep	five_prime_UTR	20449432	20450065	.	-	.	Parent=Os11t0550100-01
Chr11	irgsp1_rep	CDS	20449109	20449431	.	-	0	Parent=Os11t0550100-01
Chr11	irgsp1_rep	CDS	20445822	20446564	.	-	1	Parent=Os11t0550100-01
Chr11	irgsp1_rep	mRNA	20455340	20460320	.	-	.	ID=Os11t0550300-01;Name=Os11t0550300-01;Locus_id=Os11g0550300;Note=Hypothetical protein.;Transcript_evidence=AK103228 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033123C21;TENOR=Os11t0550300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	20460289	20460320	.	-	.	Parent=Os11t0550300-01
Chr11	irgsp1_rep	CDS	20459960	20460288	.	-	0	Parent=Os11t0550300-01
Chr11	irgsp1_rep	CDS	20459347	20459386	.	-	1	Parent=Os11t0550300-01
Chr11	irgsp1_rep	three_prime_UTR	20455340	20459346	.	-	.	Parent=Os11t0550300-01
Chr11	irgsp1_rep	mRNA	20461110	20464673	.	+	.	ID=Os11t0550500-01;Name=Os11t0550500-01;Locus_id=Os11g0550500;Note=Similar to LZ-NBS-LRR class RGA.;Transcript_evidence=AK067546 (DDBJ%2C Best hit);ORF_evidence=Q2R2Q9 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013109H16;Expression=AK067546;TENOR=Os11t0550500-01;KEGG=Os11t0550500-01
Chr11	irgsp1_rep	five_prime_UTR	20461110	20461349	.	+	.	Parent=Os11t0550500-01
Chr11	irgsp1_rep	five_prime_UTR	20461459	20461556	.	+	.	Parent=Os11t0550500-01
Chr11	irgsp1_rep	five_prime_UTR	20461626	20461651	.	+	.	Parent=Os11t0550500-01
Chr11	irgsp1_rep	CDS	20461652	20462475	.	+	0	Parent=Os11t0550500-01
Chr11	irgsp1_rep	CDS	20462591	20464511	.	+	1	Parent=Os11t0550500-01
Chr11	irgsp1_rep	three_prime_UTR	20464512	20464673	.	+	.	Parent=Os11t0550500-01
Chr11	irgsp1_rep	mRNA	20478291	20478867	.	-	.	ID=Os11t0550800-01;Name=Os11t0550800-01;Locus_id=Os11g0550800;Note=Similar to plastid-specific ribosomal protein 6.;Transcript_evidence=AK066323 (DDBJ%2C Best hit),AK104926 (DDBJ%2C Best hit);ORF_evidence=NP_001158969.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Cellular Component: chloroplast (GO:0009507),Molecular Function: structural constituent of ribosome (GO:0003735),Molecular Function: rRNA binding (GO:0019843);InterPro=Ribosomal protein L6%2C chloroplast (IPR020526);NIAS_FLcDNA=J013062D04,001-104-C08;Expression=AK066323;TENOR=Os11t0550800-01;KEGG=Os11t0550800-01
Chr11	irgsp1_rep	five_prime_UTR	20478816	20478867	.	-	.	Parent=Os11t0550800-01
Chr11	irgsp1_rep	CDS	20478432	20478815	.	-	0	Parent=Os11t0550800-01
Chr11	irgsp1_rep	three_prime_UTR	20478291	20478431	.	-	.	Parent=Os11t0550800-01
Chr11	irgsp1_rep	mRNA	20482685	20488052	.	-	.	ID=Os11t0550900-01;Name=Os11t0550900-01;Locus_id=Os11g0550900;Note=Conserved hypothetical protein.;Transcript_evidence=AK106291 (DDBJ%2C Best hit);ORF_evidence=Q2R2R1 (UniProt);NIAS_FLcDNA=002-101-B03;Expression=AK106291;TENOR=Os11t0550900-01;KEGG=Os11t0550900-01
Chr11	irgsp1_rep	five_prime_UTR	20488045	20488052	.	-	.	Parent=Os11t0550900-01
Chr11	irgsp1_rep	CDS	20487668	20488044	.	-	0	Parent=Os11t0550900-01
Chr11	irgsp1_rep	CDS	20487324	20487438	.	-	1	Parent=Os11t0550900-01
Chr11	irgsp1_rep	CDS	20485206	20485314	.	-	0	Parent=Os11t0550900-01
Chr11	irgsp1_rep	CDS	20485039	20485094	.	-	2	Parent=Os11t0550900-01
Chr11	irgsp1_rep	CDS	20484360	20484480	.	-	0	Parent=Os11t0550900-01
Chr11	irgsp1_rep	CDS	20484146	20484204	.	-	2	Parent=Os11t0550900-01
Chr11	irgsp1_rep	CDS	20483893	20484073	.	-	0	Parent=Os11t0550900-01
Chr11	irgsp1_rep	CDS	20483081	20483190	.	-	2	Parent=Os11t0550900-01
Chr11	irgsp1_rep	three_prime_UTR	20482685	20483080	.	-	.	Parent=Os11t0550900-01
Chr11	irgsp1_rep	mRNA	20501771	20503074	.	-	.	ID=Os11t0551350-01;Name=Os11t0551350-01;Locus_id=Os11g0551350;Note=Hypothetical conserved gene.;Transcript_evidence=AK243665 (DDBJ%2C Best hit);ORF_evidence=B7EZ71 (UniProt);NIAS_FLcDNA=J100089I22;TENOR=Os11t0551350-01;KEGG=Os11t0551350-01
Chr11	irgsp1_rep	five_prime_UTR	20502790	20503074	.	-	.	Parent=Os11t0551350-01
Chr11	irgsp1_rep	CDS	20502729	20502789	.	-	0	Parent=Os11t0551350-01
Chr11	irgsp1_rep	CDS	20502410	20502531	.	-	2	Parent=Os11t0551350-01
Chr11	irgsp1_rep	CDS	20502166	20502189	.	-	0	Parent=Os11t0551350-01
Chr11	irgsp1_rep	three_prime_UTR	20501771	20502165	.	-	.	Parent=Os11t0551350-01
Chr11	irgsp1_rep	mRNA	20518354	20520099	.	-	.	ID=Os11t0551800-02;Name=Os11t0551800-02;Locus_id=Os11g0551800;Note=Similar to Yippee-like protein 1 (DGL-1) (Mdgl-1).;Transcript_evidence=AK061812 (DDBJ%2C Best hit),AK066863 (DDBJ%2C Best hit);ORF_evidence=B6TSY7 (UniProt);NIAS_FLcDNA=001-040-B02,J013088A06;Expression=AK061812;TENOR=Os11t0551800-02;KEGG=Os11t0551800-02
Chr11	irgsp1_rep	five_prime_UTR	20519815	20520099	.	-	.	Parent=Os11t0551800-02
Chr11	irgsp1_rep	five_prime_UTR	20519640	20519655	.	-	.	Parent=Os11t0551800-02
Chr11	irgsp1_rep	CDS	20519547	20519639	.	-	0	Parent=Os11t0551800-02
Chr11	irgsp1_rep	CDS	20518707	20518934	.	-	0	Parent=Os11t0551800-02
Chr11	irgsp1_rep	three_prime_UTR	20518354	20518706	.	-	.	Parent=Os11t0551800-02
Chr11	irgsp1_rep	mRNA	20522000	20525236	.	+	.	ID=Os11t0551900-01;Name=Os11t0551900-01;Locus_id=Os11g0551900;CGSNL Gene Symbol=GRF8;CGSNL Gene Name=GROWTH-REGULATING FACTOR 8;Oryzabase Gene Symbol Synonym(s)=OsGRF8;Oryzabase Gene Name Synonym(s)=growth-regulating factor8;Note=Hypothetical conserved gene.;Transcript_evidence=AK103055 (DDBJ%2C Best hit);ORF_evidence=A3CCA3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides (GO:0016818);InterPro=Glutamine-Leucine-Glutamine%2C QLQ (IPR014978);NIAS_FLcDNA=J033117J15;Oryzabase=10282;Expression=AK103055;TENOR=Os11t0551900-01;KEGG=Os11t0551900-01
Chr11	irgsp1_rep	five_prime_UTR	20522000	20522051	.	+	.	Parent=Os11t0551900-01
Chr11	irgsp1_rep	CDS	20522052	20522313	.	+	0	Parent=Os11t0551900-01
Chr11	irgsp1_rep	CDS	20522886	20523094	.	+	2	Parent=Os11t0551900-01
Chr11	irgsp1_rep	three_prime_UTR	20523095	20524059	.	+	.	Parent=Os11t0551900-01
Chr11	irgsp1_rep	three_prime_UTR	20524565	20525236	.	+	.	Parent=Os11t0551900-01
Chr11	irgsp1_rep	mRNA	20525553	20530015	.	-	.	ID=Os11t0552000-01;Name=Os11t0552000-01;Locus_id=Os11g0552000;CGSNL Gene Symbol=NAAT5;CGSNL Gene Name=NICOTINAMINE AMINOTRANSFERASE 5;Oryzabase Gene Symbol Synonym(s)=OsNAAT5;Oryzabase Gene Name Synonym(s)=sativa nicotianamine aminotransferase 5;Note=Similar to Tyrosine/nicotianamine aminotransferases family protein.;Transcript_evidence=AK287462 (DDBJ%2C Best hit);ORF_evidence=A2ZFA2 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: biosynthetic process (GO:0009058),Biological Process: 1-aminocyclopropane-1-carboxylate biosynthetic process (GO:0042218),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transaminase activity (GO:0008483),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: 1-aminocyclopropane-1-carboxylate synthase activity (GO:0016847),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=1-aminocyclopropane-1-carboxylate synthase (IPR001176),Aminotransferases%2C class-I%2C pyridoxal-phosphate-binding site (IPR004838),Aminotransferase%2C class I/classII (IPR004839),Tyrosine/nicotianamine aminotransferase (IPR005958),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J043020M17;Oryzabase=8326;TENOR=Os11t0552000-01;KEGG=Os11t0552000-01 (EC:2.6.1.5)
Chr11	irgsp1_rep	five_prime_UTR	20529234	20530015	.	-	.	Parent=Os11t0552000-01
Chr11	irgsp1_rep	CDS	20528914	20529233	.	-	0	Parent=Os11t0552000-01
Chr11	irgsp1_rep	CDS	20527182	20527522	.	-	1	Parent=Os11t0552000-01
Chr11	irgsp1_rep	CDS	20526861	20527087	.	-	2	Parent=Os11t0552000-01
Chr11	irgsp1_rep	three_prime_UTR	20526595	20526860	.	-	.	Parent=Os11t0552000-01
Chr11	irgsp1_rep	three_prime_UTR	20526127	20526459	.	-	.	Parent=Os11t0552000-01
Chr11	irgsp1_rep	three_prime_UTR	20525553	20525963	.	-	.	Parent=Os11t0552000-01
Chr11	irgsp1_rep	mRNA	20533192	20538142	.	-	.	ID=Os11t0552100-01;Name=Os11t0552100-01;Locus_id=Os11g0552100;Note=Protein of unknown function DUF724 family protein.;Transcript_evidence=AK103468 (DDBJ%2C Best hit),AK240673 (DDBJ%2C Best hit);ORF_evidence=Q2R2Q0 (UniProt);InterPro=Protein of unknown function DUF724 (IPR007930);NIAS_FLcDNA=J033129P09;Expression=AK103468;TENOR=Os11t0552100-01;KEGG=Os11t0552100-01
Chr11	irgsp1_rep	five_prime_UTR	20538006	20538142	.	-	.	Parent=Os11t0552100-01
Chr11	irgsp1_rep	CDS	20537676	20538005	.	-	0	Parent=Os11t0552100-01
Chr11	irgsp1_rep	CDS	20535204	20535899	.	-	0	Parent=Os11t0552100-01
Chr11	irgsp1_rep	CDS	20534994	20535110	.	-	0	Parent=Os11t0552100-01
Chr11	irgsp1_rep	CDS	20534848	20534902	.	-	0	Parent=Os11t0552100-01
Chr11	irgsp1_rep	CDS	20534652	20534773	.	-	2	Parent=Os11t0552100-01
Chr11	irgsp1_rep	CDS	20534446	20534584	.	-	0	Parent=Os11t0552100-01
Chr11	irgsp1_rep	CDS	20533379	20534355	.	-	2	Parent=Os11t0552100-01
Chr11	irgsp1_rep	three_prime_UTR	20533192	20533378	.	-	.	Parent=Os11t0552100-01
Chr11	irgsp1_rep	mRNA	20533132	20535516	.	-	.	ID=Os11t0552100-02;Name=Os11t0552100-02;Locus_id=Os11g0552100;Note=Similar to Agenet domain containing protein.;Transcript_evidence=AK064026 (DDBJ%2C Best hit);ORF_evidence=Q2R2Q0 (UniProt);InterPro=Protein of unknown function DUF724 (IPR007930);NIAS_FLcDNA=001-125-B01;Expression=AK064026;TENOR=Os11t0552100-02;KEGG=Os11t0552100-02
Chr11	irgsp1_rep	five_prime_UTR	20535489	20535516	.	-	.	Parent=Os11t0552100-02
Chr11	irgsp1_rep	CDS	20535204	20535488	.	-	0	Parent=Os11t0552100-02
Chr11	irgsp1_rep	CDS	20534994	20535110	.	-	0	Parent=Os11t0552100-02
Chr11	irgsp1_rep	CDS	20534848	20534902	.	-	0	Parent=Os11t0552100-02
Chr11	irgsp1_rep	CDS	20534652	20534773	.	-	2	Parent=Os11t0552100-02
Chr11	irgsp1_rep	CDS	20534446	20534584	.	-	0	Parent=Os11t0552100-02
Chr11	irgsp1_rep	CDS	20533379	20534355	.	-	2	Parent=Os11t0552100-02
Chr11	irgsp1_rep	three_prime_UTR	20533132	20533378	.	-	.	Parent=Os11t0552100-02
Chr11	irgsp1_rep	mRNA	20566514	20567788	.	-	.	ID=Os11t0552500-00;Name=Os11t0552500-00;Locus_id=Os11g0552500;Note=Conserved hypothetical protein.;Transcript_evidence=FP092942 (DDBJ);ORF_evidence=NP_001176603.1 (RefSeq);TENOR=Os11t0552500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	20566751	20567788	.	-	0	Parent=Os11t0552500-00
Chr11	irgsp1_rep	three_prime_UTR	20566514	20566750	.	-	.	Parent=Os11t0552500-00
Chr11	irgsp1_rep	mRNA	20572147	20575907	.	-	.	ID=Os11t0552600-01;Name=Os11t0552600-01;Locus_id=Os11g0552600;CGSNL Gene Symbol=KIN7L;CGSNL Gene Name=KINESIN MOTOR DOMAIN CONTAINING PROTEIN 7L;Oryzabase Gene Symbol Synonym(s)=OsKIN7L;Oryzabase Gene Name Synonym(s)=kinesin motor domain containing protein 7L;Note=Similar to Kinesin-like protein.;Transcript_evidence=AK106372 (DDBJ%2C Best hit);ORF_evidence=Q2R2P7 (UniProt);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752);NIAS_FLcDNA=002-102-C11;Oryzabase=23708;Expression=AK106372;TENOR=Os11t0552600-01;KEGG=Os11t0552600-01
Chr11	irgsp1_rep	five_prime_UTR	20575907	20575907	.	-	.	Parent=Os11t0552600-01
Chr11	irgsp1_rep	CDS	20575878	20575906	.	-	0	Parent=Os11t0552600-01
Chr11	irgsp1_rep	CDS	20575304	20575406	.	-	1	Parent=Os11t0552600-01
Chr11	irgsp1_rep	CDS	20575125	20575205	.	-	0	Parent=Os11t0552600-01
Chr11	irgsp1_rep	CDS	20574292	20574360	.	-	0	Parent=Os11t0552600-01
Chr11	irgsp1_rep	CDS	20574153	20574212	.	-	0	Parent=Os11t0552600-01
Chr11	irgsp1_rep	CDS	20573864	20574016	.	-	0	Parent=Os11t0552600-01
Chr11	irgsp1_rep	CDS	20573487	20573717	.	-	0	Parent=Os11t0552600-01
Chr11	irgsp1_rep	CDS	20572369	20572749	.	-	0	Parent=Os11t0552600-01
Chr11	irgsp1_rep	three_prime_UTR	20572147	20572368	.	-	.	Parent=Os11t0552600-01
Chr11	irgsp1_rep	mRNA	20589041	20591080	.	-	.	ID=Os11t0553500-00;Name=Os11t0553500-00;Locus_id=Os11g0553500;CGSNL Gene Symbol=RLCK332;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 332;Oryzabase Gene Symbol Synonym(s)=OsRLCK332;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 332;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001068085.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);Oryzabase=19002;TENOR=Os11t0553500-00
Chr11	irgsp1_rep	CDS	20589041	20591080	.	-	0	Parent=Os11t0553500-00
Chr11	irgsp1_rep	mRNA	20589110	20591094	.	+	.	ID=Os11t0553666-00;Name=Os11t0553666-00;Locus_id=Os11g0553666;Note=Hypothetical protein.;Transcript_evidence=tplb0032f19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0553666-00
Chr11	irgsp1_rep	five_prime_UTR	20589110	20589247	.	+	.	Parent=Os11t0553666-00
Chr11	irgsp1_rep	CDS	20589248	20589493	.	+	0	Parent=Os11t0553666-00
Chr11	irgsp1_rep	three_prime_UTR	20589494	20590040	.	+	.	Parent=Os11t0553666-00
Chr11	irgsp1_rep	three_prime_UTR	20590121	20591094	.	+	.	Parent=Os11t0553666-00
Chr11	irgsp1_rep	mRNA	20598878	20599291	.	+	.	ID=Os11t0553832-00;Name=Os11t0553832-00;Locus_id=Os11g0553832;Note=Hypothetical protein.;Transcript_evidence=AK372466 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0553832-00
Chr11	irgsp1_rep	CDS	20598878	20599291	.	+	0	Parent=Os11t0553832-00
Chr11	irgsp1_rep	mRNA	20614732	20616722	.	-	.	ID=Os11t0554000-01;Name=Os11t0554000-01;Locus_id=Os11g0554000;Note=Non-protein coding transcript.;Transcript_evidence=AK241906 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J075049G22;TENOR=Os11t0554000-01
Chr11	irgsp1_rep	exon	20614732	20616722	.	-	.	Parent=Os11t0554000-01
Chr11	irgsp1_rep	mRNA	20617095	20618386	.	-	.	ID=Os11t0554200-01;Name=Os11t0554200-01;Locus_id=Os11g0554200;Note=Conserved hypothetical protein.;Transcript_evidence=AK106479 (DDBJ%2C Best hit);ORF_evidence=B8BL11 (UniProt);NIAS_FLcDNA=002-104-E02;TENOR=Os11t0554200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	20617591	20618386	.	-	.	Parent=Os11t0554200-01
Chr11	irgsp1_rep	CDS	20617204	20617590	.	-	0	Parent=Os11t0554200-01
Chr11	irgsp1_rep	three_prime_UTR	20617095	20617203	.	-	.	Parent=Os11t0554200-01
Chr11	irgsp1_rep	mRNA	20643384	20647412	.	+	.	ID=Os11t0555300-00;Name=Os11t0555300-00;Locus_id=Os11g0555300;Note=Similar to Rp1-like protein.;Transcript_evidence=ab initio prediction;ORF_evidence=E0Y9T5 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os11t0555300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	20643384	20644706	.	+	0	Parent=Os11t0555300-00
Chr11	irgsp1_rep	CDS	20644747	20647004	.	+	0	Parent=Os11t0555300-00
Chr11	irgsp1_rep	CDS	20647158	20647267	.	+	1	Parent=Os11t0555300-00
Chr11	irgsp1_rep	CDS	20647384	20647412	.	+	2	Parent=Os11t0555300-00
Chr11	irgsp1_rep	mRNA	20651030	20654076	.	-	.	ID=Os11t0555600-01;Name=Os11t0555600-01;Locus_id=Os11g0555600;CGSNL Gene Symbol=WAK117;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 117;Oryzabase Gene Symbol Synonym(s)=OsWAK117;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK102853 (DDBJ%2C Best hit);ORF_evidence=A2ZFB3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J033110K06;Oryzabase=8034;Expression=AK102853;TENOR=Os11t0555600-01;KEGG=Os11t0555600-01
Chr11	irgsp1_rep	five_prime_UTR	20653883	20654076	.	-	.	Parent=Os11t0555600-01
Chr11	irgsp1_rep	five_prime_UTR	20653311	20653383	.	-	.	Parent=Os11t0555600-01
Chr11	irgsp1_rep	CDS	20652299	20653310	.	-	0	Parent=Os11t0555600-01
Chr11	irgsp1_rep	CDS	20651885	20652006	.	-	2	Parent=Os11t0555600-01
Chr11	irgsp1_rep	three_prime_UTR	20651030	20651884	.	-	.	Parent=Os11t0555600-01
Chr11	irgsp1_rep	mRNA	20651321	20653358	.	+	.	ID=Os11t0555866-00;Name=Os11t0555866-00;Locus_id=Os11g0555866;Note=Hypothetical protein.;Transcript_evidence=tplb0032f19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0555866-00
Chr11	irgsp1_rep	five_prime_UTR	20651321	20652314	.	+	.	Parent=Os11t0555866-00
Chr11	irgsp1_rep	CDS	20652315	20652614	.	+	0	Parent=Os11t0555866-00
Chr11	irgsp1_rep	three_prime_UTR	20652615	20653358	.	+	.	Parent=Os11t0555866-00
Chr11	irgsp1_rep	mRNA	20660249	20668186	.	+	.	ID=Os11t0556132-00;Name=Os11t0556132-00;Locus_id=Os11g0556132;Note=Hypothetical protein.;Transcript_evidence=tplb0032f19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0556132-00
Chr11	irgsp1_rep	five_prime_UTR	20660249	20660342	.	+	.	Parent=Os11t0556132-00
Chr11	irgsp1_rep	CDS	20660343	20660669	.	+	0	Parent=Os11t0556132-00
Chr11	irgsp1_rep	three_prime_UTR	20660670	20661086	.	+	.	Parent=Os11t0556132-00
Chr11	irgsp1_rep	three_prime_UTR	20667054	20667208	.	+	.	Parent=Os11t0556132-00
Chr11	irgsp1_rep	three_prime_UTR	20667275	20668186	.	+	.	Parent=Os11t0556132-00
Chr11	irgsp1_rep	mRNA	20672585	20674513	.	-	.	ID=Os11t0556400-00;Name=Os11t0556400-00;Locus_id=Os11g0556400;CGSNL Gene Symbol=RLCK334;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 334;Oryzabase Gene Symbol Synonym(s)=OsRLCK334;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 334;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001068089.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);Oryzabase=19004;TENOR=Os11t0556400-00;KEGG=Os11t0556400-00
Chr11	irgsp1_rep	CDS	20672585	20674513	.	-	0	Parent=Os11t0556400-00
Chr11	irgsp1_rep	mRNA	20672683	20674534	.	+	.	ID=Os11t0556433-00;Name=Os11t0556433-00;Locus_id=Os11g0556433;Note=Hypothetical protein.;Transcript_evidence=tplb0032f19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0556433-00
Chr11	irgsp1_rep	five_prime_UTR	20672683	20673101	.	+	.	Parent=Os11t0556433-00
Chr11	irgsp1_rep	CDS	20673102	20673443	.	+	0	Parent=Os11t0556433-00
Chr11	irgsp1_rep	three_prime_UTR	20673444	20674534	.	+	.	Parent=Os11t0556433-00
Chr11	irgsp1_rep	mRNA	20680490	20680971	.	+	.	ID=Os11t0556466-00;Name=Os11t0556466-00;Locus_id=Os11g0556466;Note=Hypothetical conserved gene.;Transcript_evidence=CT835696 (DDBJ%2C Best hit);ORF_evidence=Q7F108 (UniProt);TENOR=Os11t0556466-00;KEGG=Os11t0556466-00
Chr11	irgsp1_rep	five_prime_UTR	20680490	20680495	.	+	.	Parent=Os11t0556466-00
Chr11	irgsp1_rep	CDS	20680496	20680879	.	+	0	Parent=Os11t0556466-00
Chr11	irgsp1_rep	three_prime_UTR	20680880	20680971	.	+	.	Parent=Os11t0556466-00
Chr11	irgsp1_rep	mRNA	20683795	20685811	.	+	.	ID=Os11t0556733-00;Name=Os11t0556733-00;Locus_id=Os11g0556733;Note=Hypothetical protein.;Transcript_evidence=tplb0032f19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0556733-00
Chr11	irgsp1_rep	five_prime_UTR	20683795	20684631	.	+	.	Parent=Os11t0556733-00
Chr11	irgsp1_rep	CDS	20684632	20684783	.	+	0	Parent=Os11t0556733-00
Chr11	irgsp1_rep	CDS	20684843	20685035	.	+	1	Parent=Os11t0556733-00
Chr11	irgsp1_rep	three_prime_UTR	20685036	20685811	.	+	.	Parent=Os11t0556733-00
Chr11	irgsp1_rep	mRNA	20702530	20703433	.	+	.	ID=Os11t0557000-01;Name=Os11t0557000-01;Locus_id=Os11g0557000;Note=Phytosulfokine family protein.;Transcript_evidence=AK062316 (DDBJ%2C Best hit);ORF_evidence=NP_001147408.1 (RefSeq);GO=Biological Process: cell proliferation (GO:0008283),Cellular Component: extracellular region (GO:0005576),Molecular Function: growth factor activity (GO:0008083);InterPro=Phytosulfokine (IPR009438);NIAS_FLcDNA=001-101-C04;Expression=AK062316;TENOR=Os11t0557000-01;KEGG=Os11t0557000-01
Chr11	irgsp1_rep	five_prime_UTR	20702530	20702709	.	+	.	Parent=Os11t0557000-01
Chr11	irgsp1_rep	CDS	20702710	20702850	.	+	0	Parent=Os11t0557000-01
Chr11	irgsp1_rep	CDS	20703017	20703160	.	+	0	Parent=Os11t0557000-01
Chr11	irgsp1_rep	three_prime_UTR	20703161	20703433	.	+	.	Parent=Os11t0557000-01
Chr11	irgsp1_rep	mRNA	20709538	20714159	.	-	.	ID=Os11t0557300-01;Name=Os11t0557300-01;Locus_id=Os11g0557300;Note=BSD domain containing protein.;Transcript_evidence=AK120782 (DDBJ%2C Best hit);ORF_evidence=B6TT91 (UniProt);InterPro=BSD (IPR005607);NIAS_FLcDNA=J023010D01;Expression=AK120782;TENOR=Os11t0557300-01;KEGG=Os11t0557300-01
Chr11	irgsp1_rep	five_prime_UTR	20714108	20714159	.	-	.	Parent=Os11t0557300-01
Chr11	irgsp1_rep	CDS	20713642	20714107	.	-	0	Parent=Os11t0557300-01
Chr11	irgsp1_rep	CDS	20713374	20713561	.	-	2	Parent=Os11t0557300-01
Chr11	irgsp1_rep	CDS	20709927	20710565	.	-	0	Parent=Os11t0557300-01
Chr11	irgsp1_rep	three_prime_UTR	20709538	20709926	.	-	.	Parent=Os11t0557300-01
Chr11	irgsp1_rep	mRNA	20711039	20712696	.	-	.	ID=Os11t0557400-01;Name=Os11t0557400-01;Locus_id=Os11g0557400;Note=Domain of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK107221 (DDBJ%2C Best hit);ORF_evidence=A3CCC0 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=002-125-D03;TENOR=Os11t0557400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	20711848	20712696	.	-	0	Parent=Os11t0557400-01
Chr11	irgsp1_rep	three_prime_UTR	20711039	20711847	.	-	.	Parent=Os11t0557400-01
Chr11	irgsp1_rep	mRNA	20716456	20718510	.	+	.	ID=Os11t0557500-00;Name=Os11t0557500-00;Locus_id=Os11g0557500;Oryzabase Gene Symbol Synonym(s)=OsLysM-RLK7%2C OsLYK6;Oryzabase Gene Name Synonym(s)=LysM receptor-like kinase 7%2C LysM-type receptor-like kinase6;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001176606.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: cell wall macromolecule catabolic process (GO:0016998),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Peptidoglycan-binding lysin domain (IPR018392);Oryzabase=10926;TENOR=Os11t0557500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	20716456	20718510	.	+	0	Parent=Os11t0557500-00
Chr11	irgsp1_rep	mRNA	20720048	20720121	.	+	.	ID=Os11t0557600-00;Name=Os11t0557600-00;Locus_id=Os11g0557600;Note=Non-protein coding transcript.;Transcript_evidence=X06284 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0557600-00
Chr11	irgsp1_rep	exon	20720048	20720121	.	+	.	Parent=Os11t0557600-00
Chr11	irgsp1_rep	mRNA	20720724	20723098	.	+	.	ID=Os11t0557700-01;Name=Os11t0557700-01;Locus_id=Os11g0557700;Note=Similar to S-adenosylmethionine-dependent methyltransferase/ catalytic.;Transcript_evidence=AK071694 (DDBJ%2C Best hit);ORF_evidence=NP_001151887.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Methyltransferase type 11 (IPR013216);NIAS_FLcDNA=J023108E23;TENOR=Os11t0557700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	20720724	20720725	.	+	.	Parent=Os11t0557700-01
Chr11	irgsp1_rep	CDS	20720726	20720853	.	+	0	Parent=Os11t0557700-01
Chr11	irgsp1_rep	CDS	20720963	20721059	.	+	1	Parent=Os11t0557700-01
Chr11	irgsp1_rep	CDS	20721198	20721339	.	+	0	Parent=Os11t0557700-01
Chr11	irgsp1_rep	CDS	20721467	20721549	.	+	2	Parent=Os11t0557700-01
Chr11	irgsp1_rep	CDS	20721970	20722104	.	+	0	Parent=Os11t0557700-01
Chr11	irgsp1_rep	CDS	20722373	20722477	.	+	0	Parent=Os11t0557700-01
Chr11	irgsp1_rep	CDS	20722657	20722782	.	+	0	Parent=Os11t0557700-01
Chr11	irgsp1_rep	three_prime_UTR	20722783	20723098	.	+	.	Parent=Os11t0557700-01
Chr11	irgsp1_rep	mRNA	20720771	20723628	.	+	.	ID=Os11t0557700-02;Name=Os11t0557700-02;Locus_id=Os11g0557700;Note=Similar to S-adenosylmethionine-dependent methyltransferase/ catalytic.;Transcript_evidence=AK107593 (DDBJ%2C Best hit);ORF_evidence=NP_001151887.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Methyltransferase type 11 (IPR013216);NIAS_FLcDNA=002-131-A08;TENOR=Os11t0557700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	20720771	20720853	.	+	0	Parent=Os11t0557700-02
Chr11	irgsp1_rep	CDS	20720963	20721059	.	+	1	Parent=Os11t0557700-02
Chr11	irgsp1_rep	CDS	20721198	20721339	.	+	0	Parent=Os11t0557700-02
Chr11	irgsp1_rep	CDS	20721467	20721549	.	+	2	Parent=Os11t0557700-02
Chr11	irgsp1_rep	CDS	20721970	20722104	.	+	0	Parent=Os11t0557700-02
Chr11	irgsp1_rep	CDS	20722373	20722477	.	+	0	Parent=Os11t0557700-02
Chr11	irgsp1_rep	CDS	20722657	20722782	.	+	0	Parent=Os11t0557700-02
Chr11	irgsp1_rep	three_prime_UTR	20722783	20723628	.	+	.	Parent=Os11t0557700-02
Chr11	irgsp1_rep	mRNA	20723964	20724619	.	-	.	ID=Os11t0557800-01;Name=Os11t0557800-01;Locus_id=Os11g0557800;Note=Conserved hypothetical protein.;Transcript_evidence=AK111347 (DDBJ%2C Best hit);ORF_evidence=A2ZFC3 (UniProt);NIAS_FLcDNA=002-181-G03;Expression=AK111347;TENOR=Os11t0557800-01;KEGG=Os11t0557800-01
Chr11	irgsp1_rep	five_prime_UTR	20724582	20724619	.	-	.	Parent=Os11t0557800-01
Chr11	irgsp1_rep	CDS	20724243	20724581	.	-	0	Parent=Os11t0557800-01
Chr11	irgsp1_rep	three_prime_UTR	20723964	20724242	.	-	.	Parent=Os11t0557800-01
Chr11	irgsp1_rep	mRNA	20729532	20731534	.	+	.	ID=Os11t0557900-01;Name=Os11t0557900-01;Locus_id=Os11g0557900;Note=ARP2/3 complex 16 kDa subunit (p16-Arc) family protein.;Transcript_evidence=AK063232 (DDBJ%2C Best hit);ORF_evidence=B8BL17 (UniProt);GO=Biological Process: regulation of actin filament polymerization (GO:0030833),Cellular Component: cytoskeleton (GO:0005856);InterPro=ARP2/3 complex 16kDa subunit (p16-Arc) (IPR006789);NIAS_FLcDNA=001-112-F06;Expression=AK063232;TENOR=Os11t0557900-01;KEGG=Os11t0557900-01
Chr11	irgsp1_rep	five_prime_UTR	20729532	20729585	.	+	.	Parent=Os11t0557900-01
Chr11	irgsp1_rep	CDS	20729586	20729689	.	+	0	Parent=Os11t0557900-01
Chr11	irgsp1_rep	CDS	20729801	20729873	.	+	1	Parent=Os11t0557900-01
Chr11	irgsp1_rep	CDS	20729957	20730057	.	+	0	Parent=Os11t0557900-01
Chr11	irgsp1_rep	CDS	20731116	20731251	.	+	1	Parent=Os11t0557900-01
Chr11	irgsp1_rep	three_prime_UTR	20731252	20731534	.	+	.	Parent=Os11t0557900-01
Chr11	irgsp1_rep	mRNA	20733795	20733991	.	-	.	ID=Os11t0558100-00;Name=Os11t0558100-00;Locus_id=Os11g0558100;Note=Similar to Transposase.;Transcript_evidence=EU975848 (DDBJ);ORF_evidence=E5FNA3 (UniProt);TENOR=Os11t0558100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	20733987	20733991	.	-	.	Parent=Os11t0558100-00
Chr11	irgsp1_rep	CDS	20733795	20733986	.	-	0	Parent=Os11t0558100-00
Chr11	irgsp1_rep	mRNA	20735117	20737678	.	-	.	ID=Os11t0558200-01;Name=Os11t0558200-01;Locus_id=Os11g0558200;RAP-DB Gene Name Synonym(s)=R2R3-MYB%2C OsMYB4P;Oryzabase Gene Symbol Synonym(s)=R2R3-MYB%2C OsMYB4P;Note=R2R3-type MYB transcriptional activator%2C Tolerance to Pi deficiency;Transcript_evidence=AK110844;ORF_evidence=Q2R2L6;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeodomain-like (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930);NIAS_FLcDNA=002-172-B09;Manual Curation=May 28%2C 2015;Literature_PMID=24813725;Oryzabase=16305;Expression=AK110844;TENOR=Os11t0558200-01;KEGG=Os11t0558200-01
Chr11	irgsp1_rep	five_prime_UTR	20737489	20737678	.	-	.	Parent=Os11t0558200-01
Chr11	irgsp1_rep	CDS	20737353	20737488	.	-	0	Parent=Os11t0558200-01
Chr11	irgsp1_rep	CDS	20737042	20737171	.	-	2	Parent=Os11t0558200-01
Chr11	irgsp1_rep	CDS	20735398	20736124	.	-	1	Parent=Os11t0558200-01
Chr11	irgsp1_rep	three_prime_UTR	20735117	20735397	.	-	.	Parent=Os11t0558200-01
Chr11	irgsp1_rep	mRNA	20743741	20748358	.	+	.	ID=Os11t0558300-01;Name=Os11t0558300-01;Locus_id=Os11g0558300;Oryzabase Gene Symbol Synonym(s)=OsLACS2%2C LACS2;Oryzabase Gene Name Synonym(s)=long-chain acyl-CoA synthetase 2;Note=Similar to Acyl CoA synthetase (EC 6.2.1.3).;Transcript_evidence=AK109777 (DDBJ%2C Best hit);ORF_evidence=B6SYY5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873),AMP-binding%2C conserved site (IPR020845);NIAS_FLcDNA=002-147-B09;Oryzabase=23600;Expression=AK109777;TENOR=Os11t0558300-01;KEGG=Os11t0558300-01 (EC:6.2.1.3)
Chr11	irgsp1_rep	five_prime_UTR	20743741	20743847	.	+	.	Parent=Os11t0558300-01
Chr11	irgsp1_rep	CDS	20743848	20743996	.	+	0	Parent=Os11t0558300-01
Chr11	irgsp1_rep	CDS	20744204	20744267	.	+	1	Parent=Os11t0558300-01
Chr11	irgsp1_rep	CDS	20744407	20744496	.	+	0	Parent=Os11t0558300-01
Chr11	irgsp1_rep	CDS	20744614	20744670	.	+	0	Parent=Os11t0558300-01
Chr11	irgsp1_rep	CDS	20744761	20744809	.	+	0	Parent=Os11t0558300-01
Chr11	irgsp1_rep	CDS	20745007	20745083	.	+	2	Parent=Os11t0558300-01
Chr11	irgsp1_rep	CDS	20745300	20745339	.	+	0	Parent=Os11t0558300-01
Chr11	irgsp1_rep	CDS	20745427	20745521	.	+	2	Parent=Os11t0558300-01
Chr11	irgsp1_rep	CDS	20745621	20745785	.	+	0	Parent=Os11t0558300-01
Chr11	irgsp1_rep	CDS	20745931	20746041	.	+	0	Parent=Os11t0558300-01
Chr11	irgsp1_rep	CDS	20746129	20746216	.	+	0	Parent=Os11t0558300-01
Chr11	irgsp1_rep	CDS	20746305	20746371	.	+	2	Parent=Os11t0558300-01
Chr11	irgsp1_rep	CDS	20746478	20746553	.	+	1	Parent=Os11t0558300-01
Chr11	irgsp1_rep	CDS	20746636	20746753	.	+	0	Parent=Os11t0558300-01
Chr11	irgsp1_rep	CDS	20747012	20747257	.	+	2	Parent=Os11t0558300-01
Chr11	irgsp1_rep	CDS	20747350	20747489	.	+	2	Parent=Os11t0558300-01
Chr11	irgsp1_rep	CDS	20747575	20747757	.	+	0	Parent=Os11t0558300-01
Chr11	irgsp1_rep	CDS	20747851	20747970	.	+	0	Parent=Os11t0558300-01
Chr11	irgsp1_rep	CDS	20748129	20748179	.	+	0	Parent=Os11t0558300-01
Chr11	irgsp1_rep	three_prime_UTR	20748180	20748358	.	+	.	Parent=Os11t0558300-01
Chr11	irgsp1_rep	mRNA	20746336	20747882	.	-	.	ID=Os11t0558350-01;Name=Os11t0558350-01;Locus_id=Os11g0558350;Note=Similar to Acyl-CoA synthetase (EC 6.2.1.3).;Transcript_evidence=AK241414 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065160E06;TENOR=Os11t0558350-01;KEGG=Os11t0558350-01 (EC:6.2.1.3)
Chr11	irgsp1_rep	five_prime_UTR	20747777	20747882	.	-	.	Parent=Os11t0558350-01
Chr11	irgsp1_rep	CDS	20747516	20747776	.	-	0	Parent=Os11t0558350-01
Chr11	irgsp1_rep	three_prime_UTR	20746336	20747515	.	-	.	Parent=Os11t0558350-01
Chr11	irgsp1_rep	mRNA	20748838	20751918	.	-	.	ID=Os11t0558400-00;Name=Os11t0558400-00;Locus_id=Os11g0558400;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001068098.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);TENOR=Os11t0558400-00;KEGG=Os11t0558400-00
Chr11	irgsp1_rep	CDS	20748838	20751918	.	-	0	Parent=Os11t0558400-00
Chr11	irgsp1_rep	mRNA	20754834	20759343	.	+	.	ID=Os11t0558500-01;Name=Os11t0558500-01;Locus_id=Os11g0558500;Note=Ribosome-inactivating protein domain containing protein.;Transcript_evidence=AK287471 (DDBJ%2C Best hit);ORF_evidence=B9GB74 (UniProt);GO=Biological Process: negative regulation of translation (GO:0017148),Molecular Function: rRNA N-glycosylase activity (GO:0030598);InterPro=Ribosome-inactivating protein (IPR001574);NIAS_FLcDNA=J043022F22;TENOR=Os11t0558500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	20754834	20755207	.	+	.	Parent=Os11t0558500-01
Chr11	irgsp1_rep	five_prime_UTR	20755295	20757936	.	+	.	Parent=Os11t0558500-01
Chr11	irgsp1_rep	CDS	20757937	20758260	.	+	0	Parent=Os11t0558500-01
Chr11	irgsp1_rep	three_prime_UTR	20758261	20758300	.	+	.	Parent=Os11t0558500-01
Chr11	irgsp1_rep	three_prime_UTR	20758427	20758591	.	+	.	Parent=Os11t0558500-01
Chr11	irgsp1_rep	three_prime_UTR	20758685	20759343	.	+	.	Parent=Os11t0558500-01
Chr11	irgsp1_rep	mRNA	20754871	20757463	.	+	.	ID=Os11t0558500-02;Name=Os11t0558500-02;Locus_id=Os11g0558500;Note=Hypothetical protein.;Transcript_evidence=AK073090 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033022L24;Expression=AK073090;TENOR=Os11t0558500-02;KEGG=Os11t0558500-02
Chr11	irgsp1_rep	five_prime_UTR	20754871	20755400	.	+	.	Parent=Os11t0558500-02
Chr11	irgsp1_rep	CDS	20755401	20755742	.	+	0	Parent=Os11t0558500-02
Chr11	irgsp1_rep	three_prime_UTR	20755743	20757463	.	+	.	Parent=Os11t0558500-02
Chr11	irgsp1_rep	mRNA	20759465	20760108	.	-	.	ID=Os11t0558566-00;Name=Os11t0558566-00;Locus_id=Os11g0558566;Note=Hypothetical conserved gene.;Transcript_evidence=AK062794 (DDBJ%2C Secondary hit);ORF_evidence=Q658D9 (UniProt);Expression=AK062794;TENOR=Os11t0558566-00;KEGG=Os11t0558566-00
Chr11	irgsp1_rep	five_prime_UTR	20760047	20760108	.	-	.	Parent=Os11t0558566-00
Chr11	irgsp1_rep	CDS	20759729	20760046	.	-	0	Parent=Os11t0558566-00
Chr11	irgsp1_rep	three_prime_UTR	20759465	20759728	.	-	.	Parent=Os11t0558566-00
Chr11	irgsp1_rep	mRNA	20770062	20773259	.	+	.	ID=Os11t0558900-01;Name=Os11t0558900-01;Locus_id=Os11g0558900;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=AK119422 (DDBJ%2C Best hit);ORF_evidence=Q2R2I9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=001-132-H02;Expression=AK119422;TENOR=Os11t0558900-01;KEGG=Os11t0558900-01
Chr11	irgsp1_rep	five_prime_UTR	20770062	20770118	.	+	.	Parent=Os11t0558900-01
Chr11	irgsp1_rep	CDS	20770119	20773079	.	+	0	Parent=Os11t0558900-01
Chr11	irgsp1_rep	three_prime_UTR	20773080	20773259	.	+	.	Parent=Os11t0558900-01
Chr11	irgsp1_rep	mRNA	20802978	20806262	.	+	.	ID=Os11t0559200-00;Name=Os11t0559200-00;Locus_id=Os11g0559200;CGSNL Gene Symbol=XA21;CGSNL Gene Name=XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 21;Oryzabase Gene Symbol Synonym(s)=Xa21*%2C Xa21%2C OsXA21;Oryzabase Gene Name Synonym(s)=Xanthomonas oryzae pv. oryzae resistance 21%2C Xanthomonas campestris pv. oryzae resistance-21%2C Xanthomonas oryzae pv. oryzae resistance-21%2C Xanthomonas resistance 21;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=O24436 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);Oryzabase=935;TENOR=Os11t0559200-00;KEGG=Os11t0559200-00
Chr11	irgsp1_rep	CDS	20802978	20805597	.	+	0	Parent=Os11t0559200-00
Chr11	irgsp1_rep	CDS	20805886	20806262	.	+	2	Parent=Os11t0559200-00
Chr11	irgsp1_rep	mRNA	20804934	20805222	.	-	.	ID=Os11t0559366-00;Name=Os11t0559366-00;Locus_id=Os11g0559366;Note=Non-protein coding transcript.;Transcript_evidence=BT009298 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0559366-00
Chr11	irgsp1_rep	exon	20804934	20805222	.	-	.	Parent=Os11t0559366-00
Chr11	irgsp1_rep	mRNA	20814240	20815223	.	-	.	ID=Os11t0559533-01;Name=Os11t0559533-01;Locus_id=Os11g0559533;Note=Hypothetical gene.;Transcript_evidence=AK241137 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065099F08;TENOR=Os11t0559533-01;KEGG=Os11t0559533-01
Chr11	irgsp1_rep	CDS	20815002	20815223	.	-	0	Parent=Os11t0559533-01
Chr11	irgsp1_rep	three_prime_UTR	20814867	20815001	.	-	.	Parent=Os11t0559533-01
Chr11	irgsp1_rep	three_prime_UTR	20814240	20814589	.	-	.	Parent=Os11t0559533-01
Chr11	irgsp1_rep	mRNA	20832524	20835844	.	-	.	ID=Os11t0559600-01;Name=Os11t0559600-01;Locus_id=Os11g0559600;Note=Conserved hypothetical protein.;Transcript_evidence=AK064906 (DDBJ%2C Best hit);ORF_evidence=B9GB76 (UniProt);NIAS_FLcDNA=J013000L21;TENOR=Os11t0559600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	20835467	20835844	.	-	.	Parent=Os11t0559600-01
Chr11	irgsp1_rep	five_prime_UTR	20834225	20834576	.	-	.	Parent=Os11t0559600-01
Chr11	irgsp1_rep	CDS	20833946	20834224	.	-	0	Parent=Os11t0559600-01
Chr11	irgsp1_rep	three_prime_UTR	20832524	20833945	.	-	.	Parent=Os11t0559600-01
Chr11	irgsp1_rep	mRNA	20838846	20839321	.	+	.	ID=Os11t0560033-00;Name=Os11t0560033-00;Locus_id=Os11g0560033;Note=Non-protein coding transcript.;Transcript_evidence=BT062527 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0560033-00
Chr11	irgsp1_rep	exon	20838846	20839321	.	+	.	Parent=Os11t0560033-00
Chr11	irgsp1_rep	mRNA	20873272	20874309	.	+	.	ID=Os11t0560366-00;Name=Os11t0560366-00;Locus_id=Os11g0560366;Note=Hypothetical protein.;Transcript_evidence=FP095358 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0560366-00
Chr11	irgsp1_rep	CDS	20873272	20873376	.	+	0	Parent=Os11t0560366-00
Chr11	irgsp1_rep	CDS	20874116	20874309	.	+	0	Parent=Os11t0560366-00
Chr11	irgsp1_rep	mRNA	20895137	20895683	.	+	.	ID=Os11t0560900-00;Name=Os11t0560900-00;Locus_id=Os11g0560900;Note=Similar to Leucine Rich Repeat family protein.;Transcript_evidence=X79130 (DDBJ);ORF_evidence=Q2R2J1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);TENOR=Os11t0560900-00
Chr11	irgsp1_rep	five_prime_UTR	20895137	20895161	.	+	.	Parent=Os11t0560900-00
Chr11	irgsp1_rep	CDS	20895162	20895683	.	+	0	Parent=Os11t0560900-00
Chr11	irgsp1_rep	mRNA	20902326	20905361	.	+	.	ID=Os11t0561100-00;Name=Os11t0561100-00;Locus_id=Os11g0561100;Note=Similar to Leucine Rich Repeat family protein.;Transcript_evidence=AK119422 (DDBJ%2C Secondary hit);ORF_evidence=Q2R2I9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);Expression=AK119422;TENOR=Os11t0561100-00;KEGG=Os11t0561100-00
Chr11	irgsp1_rep	CDS	20902326	20905178	.	+	0	Parent=Os11t0561100-00
Chr11	irgsp1_rep	three_prime_UTR	20905179	20905361	.	+	.	Parent=Os11t0561100-00
Chr11	irgsp1_rep	mRNA	20942418	20959700	.	+	.	ID=Os11t0562100-01;Name=Os11t0562100-01;Locus_id=Os11g0562100;Oryzabase Gene Symbol Synonym(s)=OsIAS%2C OsOSC11%2C IAS%2C OSC11;Oryzabase Gene Name Synonym(s)=isoarborinol synthase%2C oxidosqualene cyclase 11;Note=Squalene cyclase domain containing protein.;Transcript_evidence=AK067451 (DDBJ%2C Best hit);ORF_evidence=NP_001152006.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: intramolecular transferase activity (GO:0016866);InterPro=Prenyltransferase/squalene oxidase (IPR001330),Terpene synthase%2C conserved site (IPR002365),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930),Squalene cyclase (IPR018333);NIAS_FLcDNA=J013107E04;Oryzabase=10200;Expression=AK067451;TENOR=Os11t0562100-01;KEGG=Os11t0562100-01
Chr11	irgsp1_rep	five_prime_UTR	20942418	20942478	.	+	.	Parent=Os11t0562100-01
Chr11	irgsp1_rep	CDS	20942479	20942676	.	+	0	Parent=Os11t0562100-01
Chr11	irgsp1_rep	CDS	20943062	20943262	.	+	0	Parent=Os11t0562100-01
Chr11	irgsp1_rep	CDS	20943354	20943443	.	+	0	Parent=Os11t0562100-01
Chr11	irgsp1_rep	CDS	20944017	20944205	.	+	0	Parent=Os11t0562100-01
Chr11	irgsp1_rep	CDS	20944894	20944975	.	+	0	Parent=Os11t0562100-01
Chr11	irgsp1_rep	CDS	20945569	20945738	.	+	2	Parent=Os11t0562100-01
Chr11	irgsp1_rep	CDS	20947082	20947270	.	+	0	Parent=Os11t0562100-01
Chr11	irgsp1_rep	CDS	20948687	20948800	.	+	0	Parent=Os11t0562100-01
Chr11	irgsp1_rep	CDS	20951953	20952075	.	+	0	Parent=Os11t0562100-01
Chr11	irgsp1_rep	CDS	20952164	20952286	.	+	0	Parent=Os11t0562100-01
Chr11	irgsp1_rep	CDS	20952764	20952862	.	+	0	Parent=Os11t0562100-01
Chr11	irgsp1_rep	CDS	20954371	20954427	.	+	0	Parent=Os11t0562100-01
Chr11	irgsp1_rep	CDS	20954721	20954767	.	+	0	Parent=Os11t0562100-01
Chr11	irgsp1_rep	CDS	20954881	20955024	.	+	1	Parent=Os11t0562100-01
Chr11	irgsp1_rep	CDS	20955125	20955302	.	+	1	Parent=Os11t0562100-01
Chr11	irgsp1_rep	CDS	20955903	20955983	.	+	0	Parent=Os11t0562100-01
Chr11	irgsp1_rep	CDS	20956065	20956148	.	+	0	Parent=Os11t0562100-01
Chr11	irgsp1_rep	CDS	20959331	20959450	.	+	0	Parent=Os11t0562100-01
Chr11	irgsp1_rep	three_prime_UTR	20959451	20959700	.	+	.	Parent=Os11t0562100-01
Chr11	irgsp1_rep	mRNA	20946409	20959689	.	+	.	ID=Os11t0562100-02;Name=Os11t0562100-02;Locus_id=Os11g0562100;Oryzabase Gene Symbol Synonym(s)=OsIAS%2C OsOSC11%2C IAS%2C OSC11;Oryzabase Gene Name Synonym(s)=isoarborinol synthase%2C oxidosqualene cyclase 11;Note=Similar to cycloartenol synthase.;Transcript_evidence=AK099950 (DDBJ%2C Best hit);ORF_evidence=NP_001152006.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: intramolecular transferase activity (GO:0016866);InterPro=Prenyltransferase/squalene oxidase (IPR001330),Terpene synthase%2C conserved site (IPR002365),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930),Squalene cyclase (IPR018333);NIAS_FLcDNA=J013123F24;Oryzabase=10200;Expression=AK099950;TENOR=Os11t0562100-02;KEGG=Os11t0562100-02
Chr11	irgsp1_rep	five_prime_UTR	20946409	20947075	.	+	.	Parent=Os11t0562100-02
Chr11	irgsp1_rep	CDS	20947076	20947270	.	+	0	Parent=Os11t0562100-02
Chr11	irgsp1_rep	CDS	20948687	20948800	.	+	0	Parent=Os11t0562100-02
Chr11	irgsp1_rep	CDS	20951953	20952075	.	+	0	Parent=Os11t0562100-02
Chr11	irgsp1_rep	CDS	20952164	20952286	.	+	0	Parent=Os11t0562100-02
Chr11	irgsp1_rep	CDS	20952764	20952862	.	+	0	Parent=Os11t0562100-02
Chr11	irgsp1_rep	CDS	20954371	20954427	.	+	0	Parent=Os11t0562100-02
Chr11	irgsp1_rep	CDS	20954721	20954767	.	+	0	Parent=Os11t0562100-02
Chr11	irgsp1_rep	CDS	20954881	20955024	.	+	1	Parent=Os11t0562100-02
Chr11	irgsp1_rep	CDS	20955125	20955302	.	+	1	Parent=Os11t0562100-02
Chr11	irgsp1_rep	CDS	20955903	20955983	.	+	0	Parent=Os11t0562100-02
Chr11	irgsp1_rep	CDS	20956065	20956148	.	+	0	Parent=Os11t0562100-02
Chr11	irgsp1_rep	CDS	20959331	20959450	.	+	0	Parent=Os11t0562100-02
Chr11	irgsp1_rep	three_prime_UTR	20959451	20959689	.	+	.	Parent=Os11t0562100-02
Chr11	irgsp1_rep	mRNA	20947646	20948320	.	-	.	ID=Os11t0562266-00;Name=Os11t0562266-00;Locus_id=Os11g0562266;Note=Conserved hypothetical protein.;Transcript_evidence=BT086332 (DDBJ);ORF_evidence=A2Y774 (UniProt);TENOR=Os11t0562266-00
Chr11	irgsp1_rep	CDS	20947646	20948320	.	-	0	Parent=Os11t0562266-00
Chr11	irgsp1_rep	mRNA	20962368	20962467	.	+	.	ID=Os11t0562432-00;Name=Os11t0562432-00;Locus_id=Os11g0562432;Note=Non-protein coding transcript.;Transcript_evidence=EU941715 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0562432-00
Chr11	irgsp1_rep	exon	20962368	20962467	.	+	.	Parent=Os11t0562432-00
Chr11	irgsp1_rep	mRNA	20964403	20966323	.	-	.	ID=Os11t0562600-00;Name=Os11t0562600-00;Locus_id=Os11g0562600;Note=Conserved hypothetical protein.;Transcript_evidence=AK062668 (DDBJ%2C Secondary hit);ORF_evidence=Q84PQ2 (UniProt);TENOR=Os11t0562600-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	20966323	20966323	.	-	.	Parent=Os11t0562600-00
Chr11	irgsp1_rep	CDS	20966073	20966322	.	-	0	Parent=Os11t0562600-00
Chr11	irgsp1_rep	CDS	20966003	20966066	.	-	2	Parent=Os11t0562600-00
Chr11	irgsp1_rep	CDS	20965723	20965726	.	-	1	Parent=Os11t0562600-00
Chr11	irgsp1_rep	three_prime_UTR	20965673	20965722	.	-	.	Parent=Os11t0562600-00
Chr11	irgsp1_rep	three_prime_UTR	20965554	20965664	.	-	.	Parent=Os11t0562600-00
Chr11	irgsp1_rep	three_prime_UTR	20964777	20964882	.	-	.	Parent=Os11t0562600-00
Chr11	irgsp1_rep	three_prime_UTR	20964403	20964657	.	-	.	Parent=Os11t0562600-00
Chr11	irgsp1_rep	mRNA	21031038	21037729	.	-	.	ID=Os11t0564800-01;Name=Os11t0564800-01;Locus_id=Os11g0564800;Note=Hypothetical protein.;Transcript_evidence=AK120272 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013047P10;Expression=AK120272;TENOR=Os11t0564800-01;KEGG=Os11t0564800-01
Chr11	irgsp1_rep	five_prime_UTR	21037466	21037729	.	-	.	Parent=Os11t0564800-01
Chr11	irgsp1_rep	five_prime_UTR	21032505	21037329	.	-	.	Parent=Os11t0564800-01
Chr11	irgsp1_rep	CDS	21032112	21032504	.	-	0	Parent=Os11t0564800-01
Chr11	irgsp1_rep	three_prime_UTR	21031038	21032111	.	-	.	Parent=Os11t0564800-01
Chr11	irgsp1_rep	mRNA	21031351	21034395	.	+	.	ID=Os11t0564900-00;Name=Os11t0564900-00;Locus_id=Os11g0564900;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9GB87 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);TENOR=Os11t0564900-00
Chr11	irgsp1_rep	CDS	21031351	21034395	.	+	0	Parent=Os11t0564900-00
Chr11	irgsp1_rep	mRNA	21040870	21043941	.	+	.	ID=Os11t0565000-01;Name=Os11t0565000-01;Locus_id=Os11g0565000;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=AK241152 (DDBJ%2C Best hit);ORF_evidence=Q2R2I9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J065113J02;TENOR=Os11t0565000-01;KEGG=Os11t0565000-01
Chr11	irgsp1_rep	five_prime_UTR	21040870	21040941	.	+	.	Parent=Os11t0565000-01
Chr11	irgsp1_rep	CDS	21040942	21043791	.	+	0	Parent=Os11t0565000-01
Chr11	irgsp1_rep	three_prime_UTR	21043792	21043941	.	+	.	Parent=Os11t0565000-01
Chr11	irgsp1_rep	mRNA	21047440	21049536	.	-	.	ID=Os11t0565300-00;Name=Os11t0565300-00;Locus_id=Os11g0565300;CGSNL Gene Symbol=WAK120;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 120;Oryzabase Gene Symbol Synonym(s)=OsWAK120;Note=Similar to Protein kinase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R2G9 (UniProt);Oryzabase=8037;TENOR=Os11t0565300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	21049515	21049536	.	-	0	Parent=Os11t0565300-00
Chr11	irgsp1_rep	CDS	21047893	21048613	.	-	2	Parent=Os11t0565300-00
Chr11	irgsp1_rep	CDS	21047687	21047789	.	-	1	Parent=Os11t0565300-00
Chr11	irgsp1_rep	CDS	21047440	21047577	.	-	0	Parent=Os11t0565300-00
Chr11	irgsp1_rep	mRNA	21050994	21056185	.	-	.	ID=Os11t0565400-01;Name=Os11t0565400-01;Locus_id=Os11g0565400;Note=Similar to RING finger family protein.;Transcript_evidence=AK065292 (DDBJ%2C Best hit);ORF_evidence=Q2R2G6 (UniProt);InterPro=Ubiquitin-conjugating enzyme/RWD-like (IPR016135);NIAS_FLcDNA=J013002N04;Expression=AK065292;TENOR=Os11t0565400-01;KEGG=Os11t0565400-01
Chr11	irgsp1_rep	five_prime_UTR	21056134	21056185	.	-	.	Parent=Os11t0565400-01
Chr11	irgsp1_rep	CDS	21055720	21056133	.	-	0	Parent=Os11t0565400-01
Chr11	irgsp1_rep	three_prime_UTR	21054635	21055719	.	-	.	Parent=Os11t0565400-01
Chr11	irgsp1_rep	three_prime_UTR	21053668	21053805	.	-	.	Parent=Os11t0565400-01
Chr11	irgsp1_rep	three_prime_UTR	21053044	21053180	.	-	.	Parent=Os11t0565400-01
Chr11	irgsp1_rep	three_prime_UTR	21052883	21052965	.	-	.	Parent=Os11t0565400-01
Chr11	irgsp1_rep	three_prime_UTR	21052015	21052169	.	-	.	Parent=Os11t0565400-01
Chr11	irgsp1_rep	three_prime_UTR	21050994	21051753	.	-	.	Parent=Os11t0565400-01
Chr11	irgsp1_rep	mRNA	21079173	21082347	.	+	.	ID=Os11t0565920-00;Name=Os11t0565920-00;Locus_id=Os11g0565920;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=AK357898 (DDBJ);ORF_evidence=NP_001176609.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);TENOR=Os11t0565920-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	21079173	21082340	.	+	0	Parent=Os11t0565920-00
Chr11	irgsp1_rep	three_prime_UTR	21082341	21082347	.	+	.	Parent=Os11t0565920-00
Chr11	irgsp1_rep	mRNA	21102794	21104582	.	+	.	ID=Os11t0566800-01;Name=Os11t0566800-01;Locus_id=Os11g0566800;CGSNL Gene Symbol=PKS27;CGSNL Gene Name=POLYKETIDE SYNTHASE 27;Oryzabase Gene Symbol Synonym(s)=OsPKS27%2C OsCHS25%2C CHS25;Oryzabase Gene Name Synonym(s)=polyketide synthase 27%2C Chalcone synthase 25;Note=Similar to Bibenzyl synthase (EC 2.3.1.-).;Transcript_evidence=AK061132 (DDBJ%2C Best hit);ORF_evidence=Q01ME3 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Chalcone/stilbene synthase%2C N-terminal (IPR001099),Polyketide synthase%2C type III (IPR011141),Chalcone/stilbene synthase%2C C-terminal (IPR012328),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);NIAS_FLcDNA=006-208-A07;Oryzabase=21573;Expression=AK061132;TENOR=Os11t0566800-01;KEGG=Os11t0566800-01
Chr11	irgsp1_rep	five_prime_UTR	21102794	21102864	.	+	.	Parent=Os11t0566800-01
Chr11	irgsp1_rep	CDS	21102865	21103060	.	+	0	Parent=Os11t0566800-01
Chr11	irgsp1_rep	CDS	21103427	21104430	.	+	2	Parent=Os11t0566800-01
Chr11	irgsp1_rep	three_prime_UTR	21104431	21104582	.	+	.	Parent=Os11t0566800-01
Chr11	irgsp1_rep	mRNA	21103422	21104298	.	-	.	ID=Os11t0567200-00;Name=Os11t0567200-00;Locus_id=Os11g0567200;Note=Hypothetical protein.;Transcript_evidence=EU966441 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0567200-00
Chr11	irgsp1_rep	CDS	21103423	21104298	.	-	0	Parent=Os11t0567200-00
Chr11	irgsp1_rep	three_prime_UTR	21103422	21103422	.	-	.	Parent=Os11t0567200-00
Chr11	irgsp1_rep	mRNA	21145760	21148865	.	+	.	ID=Os11t0567600-01;Name=Os11t0567600-01;Locus_id=Os11g0567600;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=AK065598 (DDBJ%2C Best hit);ORF_evidence=B9GB87 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=J013027L03;TENOR=Os11t0567600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	21145760	21147437	.	+	.	Parent=Os11t0567600-01
Chr11	irgsp1_rep	CDS	21147438	21148697	.	+	0	Parent=Os11t0567600-01
Chr11	irgsp1_rep	three_prime_UTR	21148698	21148865	.	+	.	Parent=Os11t0567600-01
Chr11	irgsp1_rep	mRNA	21156776	21159062	.	+	.	ID=Os11t0567800-01;Name=Os11t0567800-01;Locus_id=Os11g0567800;Note=Leucine-rich repeat-containing N-terminal%2C type 2 domain containing protein.;Transcript_evidence=AK065753 (DDBJ%2C Best hit);ORF_evidence=A3CCF8 (UniProt);InterPro=Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J013036G07;TENOR=Os11t0567800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	21156776	21156827	.	+	.	Parent=Os11t0567800-01
Chr11	irgsp1_rep	CDS	21156828	21157045	.	+	0	Parent=Os11t0567800-01
Chr11	irgsp1_rep	CDS	21157120	21157126	.	+	1	Parent=Os11t0567800-01
Chr11	irgsp1_rep	three_prime_UTR	21157127	21159062	.	+	.	Parent=Os11t0567800-01
Chr11	irgsp1_rep	mRNA	21161254	21162387	.	+	.	ID=Os11t0567900-01;Name=Os11t0567900-01;Locus_id=Os11g0567900;Note=Hypothetical protein.;Transcript_evidence=AK242731 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090047L20;TENOR=Os11t0567900-01
Chr11	irgsp1_rep	five_prime_UTR	21161254	21161749	.	+	.	Parent=Os11t0567900-01
Chr11	irgsp1_rep	CDS	21161750	21162070	.	+	0	Parent=Os11t0567900-01
Chr11	irgsp1_rep	three_prime_UTR	21162071	21162387	.	+	.	Parent=Os11t0567900-01
Chr11	irgsp1_rep	mRNA	21178535	21182284	.	-	.	ID=Os11t0568300-01;Name=Os11t0568300-01;Locus_id=Os11g0568300;Note=Cell division cycle-associated protein domain containing protein.;Transcript_evidence=AK103282 (DDBJ%2C Best hit),AK064398 (DDBJ%2C Best hit);ORF_evidence=NP_001149767.1 (RefSeq);GO=Molecular Function: DNA binding (GO:0003677);InterPro=AT hook%2C DNA-binding motif (IPR017956),Zinc-finger domain of monoamine-oxidase A repressor R1 (IPR018866);NIAS_FLcDNA=J033124M10,002-108-G10;Expression=AK103282;TENOR=Os11t0568300-01;KEGG=Os11t0568300-01
Chr11	irgsp1_rep	five_prime_UTR	21182145	21182284	.	-	.	Parent=Os11t0568300-01
Chr11	irgsp1_rep	CDS	21181792	21182144	.	-	0	Parent=Os11t0568300-01
Chr11	irgsp1_rep	CDS	21180615	21180854	.	-	1	Parent=Os11t0568300-01
Chr11	irgsp1_rep	CDS	21180203	21180286	.	-	1	Parent=Os11t0568300-01
Chr11	irgsp1_rep	CDS	21179447	21179576	.	-	1	Parent=Os11t0568300-01
Chr11	irgsp1_rep	CDS	21178825	21179235	.	-	0	Parent=Os11t0568300-01
Chr11	irgsp1_rep	three_prime_UTR	21178535	21178824	.	-	.	Parent=Os11t0568300-01
Chr11	irgsp1_rep	mRNA	21178797	21179549	.	+	.	ID=Os11t0568401-00;Name=Os11t0568401-00;Locus_id=Os11g0568401;Note=Non-protein coding transcript.;Transcript_evidence=BT018920 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0568401-00
Chr11	irgsp1_rep	exon	21178797	21179217	.	+	.	Parent=Os11t0568401-00
Chr11	irgsp1_rep	exon	21179434	21179549	.	+	.	Parent=Os11t0568401-00
Chr11	irgsp1_rep	mRNA	21185518	21187738	.	+	.	ID=Os11t0568500-01;Name=Os11t0568500-01;Locus_id=Os11g0568500;Note=Prefoldin domain containing protein.;Transcript_evidence=AK059656 (DDBJ%2C Best hit);ORF_evidence=B6TMM5 (UniProt);GO=Biological Process: protein folding (GO:0006457),Cellular Component: prefoldin complex (GO:0016272),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Prefoldin beta-like (IPR002777),Prefoldin (IPR009053);NIAS_FLcDNA=001-031-D04;Expression=AK059656;TENOR=Os11t0568500-01;KEGG=Os11t0568500-01
Chr11	irgsp1_rep	five_prime_UTR	21185518	21185720	.	+	.	Parent=Os11t0568500-01
Chr11	irgsp1_rep	five_prime_UTR	21187021	21187055	.	+	.	Parent=Os11t0568500-01
Chr11	irgsp1_rep	CDS	21187056	21187499	.	+	0	Parent=Os11t0568500-01
Chr11	irgsp1_rep	three_prime_UTR	21187500	21187738	.	+	.	Parent=Os11t0568500-01
Chr11	irgsp1_rep	mRNA	21188307	21197806	.	+	.	ID=Os11t0568600-01;Name=Os11t0568600-01;Locus_id=Os11g0568600;Note=THUMP domain containing protein.;Transcript_evidence=AK121732 (DDBJ%2C Best hit);ORF_evidence=B7F5C0 (UniProt);InterPro=THUMP (IPR004114);NIAS_FLcDNA=J033082H18;Expression=AK121732;TENOR=Os11t0568600-01;KEGG=Os11t0568600-01
Chr11	irgsp1_rep	five_prime_UTR	21188307	21188380	.	+	.	Parent=Os11t0568600-01
Chr11	irgsp1_rep	CDS	21188381	21188584	.	+	0	Parent=Os11t0568600-01
Chr11	irgsp1_rep	CDS	21189090	21189521	.	+	0	Parent=Os11t0568600-01
Chr11	irgsp1_rep	CDS	21190083	21190222	.	+	0	Parent=Os11t0568600-01
Chr11	irgsp1_rep	CDS	21190312	21190432	.	+	1	Parent=Os11t0568600-01
Chr11	irgsp1_rep	CDS	21191141	21191281	.	+	0	Parent=Os11t0568600-01
Chr11	irgsp1_rep	CDS	21197477	21197563	.	+	0	Parent=Os11t0568600-01
Chr11	irgsp1_rep	three_prime_UTR	21197564	21197806	.	+	.	Parent=Os11t0568600-01
Chr11	irgsp1_rep	mRNA	21188376	21194581	.	+	.	ID=Os11t0568600-02;Name=Os11t0568600-02;Locus_id=Os11g0568600;Note=Similar to THUMP domain containing protein.;Transcript_evidence=AK119932 (DDBJ%2C Best hit);ORF_evidence=B6T443 (UniProt);InterPro=THUMP (IPR004114);NIAS_FLcDNA=002-184-A08;Expression=AK119932;TENOR=Os11t0568600-02;KEGG=Os11t0568600-02
Chr11	irgsp1_rep	five_prime_UTR	21188376	21188380	.	+	.	Parent=Os11t0568600-02
Chr11	irgsp1_rep	CDS	21188381	21188584	.	+	0	Parent=Os11t0568600-02
Chr11	irgsp1_rep	CDS	21189090	21189521	.	+	0	Parent=Os11t0568600-02
Chr11	irgsp1_rep	CDS	21190083	21190222	.	+	0	Parent=Os11t0568600-02
Chr11	irgsp1_rep	CDS	21190312	21190432	.	+	1	Parent=Os11t0568600-02
Chr11	irgsp1_rep	CDS	21191141	21191281	.	+	0	Parent=Os11t0568600-02
Chr11	irgsp1_rep	CDS	21194294	21194353	.	+	0	Parent=Os11t0568600-02
Chr11	irgsp1_rep	three_prime_UTR	21194354	21194581	.	+	.	Parent=Os11t0568600-02
Chr11	irgsp1_rep	mRNA	21195134	21195969	.	-	.	ID=Os11t0568633-00;Name=Os11t0568633-00;Locus_id=Os11g0568633;Note=Conserved hypothetical protein.;Transcript_evidence=AK363235 (DDBJ);ORF_evidence=NP_001067053.1 (RefSeq);TENOR=Os11t0568633-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	21195944	21195969	.	-	.	Parent=Os11t0568633-00
Chr11	irgsp1_rep	CDS	21195920	21195943	.	-	0	Parent=Os11t0568633-00
Chr11	irgsp1_rep	CDS	21195311	21195415	.	-	0	Parent=Os11t0568633-00
Chr11	irgsp1_rep	three_prime_UTR	21195134	21195310	.	-	.	Parent=Os11t0568633-00
Chr11	irgsp1_rep	mRNA	21193026	21194597	.	-	.	ID=Os11t0568666-01;Name=Os11t0568666-01;Locus_id=Os11g0568666;Note=Similar to OSIGBa0130K07.4 protein.;Transcript_evidence=AK288955 (DDBJ%2C Best hit);ORF_evidence=Q01LK3 (UniProt);NIAS_FLcDNA=J090083O10;TENOR=Os11t0568666-01;KEGG=Os11t0568666-01
Chr11	irgsp1_rep	five_prime_UTR	21193524	21194597	.	-	.	Parent=Os11t0568666-01
Chr11	irgsp1_rep	CDS	21193359	21193523	.	-	0	Parent=Os11t0568666-01
Chr11	irgsp1_rep	three_prime_UTR	21193026	21193358	.	-	.	Parent=Os11t0568666-01
Chr11	irgsp1_rep	mRNA	21201721	21203627	.	+	.	ID=Os11t0568700-01;Name=Os11t0568700-01;Locus_id=Os11g0568700;Note=Conserved hypothetical protein.;Transcript_evidence=AK121332 (DDBJ%2C Best hit);ORF_evidence=A3CCG4 (UniProt);NIAS_FLcDNA=J023119C16;Expression=AK121332;TENOR=Os11t0568700-01;KEGG=Os11t0568700-01
Chr11	irgsp1_rep	five_prime_UTR	21201721	21201809	.	+	.	Parent=Os11t0568700-01
Chr11	irgsp1_rep	five_prime_UTR	21202252	21202284	.	+	.	Parent=Os11t0568700-01
Chr11	irgsp1_rep	CDS	21202285	21202441	.	+	0	Parent=Os11t0568700-01
Chr11	irgsp1_rep	CDS	21202781	21202902	.	+	2	Parent=Os11t0568700-01
Chr11	irgsp1_rep	CDS	21203238	21203346	.	+	0	Parent=Os11t0568700-01
Chr11	irgsp1_rep	CDS	21203429	21203472	.	+	2	Parent=Os11t0568700-01
Chr11	irgsp1_rep	three_prime_UTR	21203473	21203627	.	+	.	Parent=Os11t0568700-01
Chr11	irgsp1_rep	mRNA	21201731	21207327	.	+	.	ID=Os11t0568700-02;Name=Os11t0568700-02;Locus_id=Os11g0568700;Note=START-like domain domain containing protein.;Transcript_evidence=AK099671 (DDBJ%2C Best hit);ORF_evidence=A3CCG4 (UniProt);InterPro=START-like domain (IPR023393);NIAS_FLcDNA=J013068G16;Expression=AK099671;TENOR=Os11t0568700-02;KEGG=Os11t0568700-02
Chr11	irgsp1_rep	five_prime_UTR	21201731	21201809	.	+	.	Parent=Os11t0568700-02
Chr11	irgsp1_rep	five_prime_UTR	21202252	21202284	.	+	.	Parent=Os11t0568700-02
Chr11	irgsp1_rep	CDS	21202285	21202441	.	+	0	Parent=Os11t0568700-02
Chr11	irgsp1_rep	CDS	21202781	21202902	.	+	2	Parent=Os11t0568700-02
Chr11	irgsp1_rep	CDS	21203238	21203346	.	+	0	Parent=Os11t0568700-02
Chr11	irgsp1_rep	CDS	21203429	21203468	.	+	2	Parent=Os11t0568700-02
Chr11	irgsp1_rep	CDS	21204273	21204362	.	+	1	Parent=Os11t0568700-02
Chr11	irgsp1_rep	CDS	21204476	21204575	.	+	1	Parent=Os11t0568700-02
Chr11	irgsp1_rep	CDS	21204684	21204823	.	+	0	Parent=Os11t0568700-02
Chr11	irgsp1_rep	CDS	21205418	21205520	.	+	1	Parent=Os11t0568700-02
Chr11	irgsp1_rep	CDS	21205695	21206206	.	+	0	Parent=Os11t0568700-02
Chr11	irgsp1_rep	CDS	21206295	21206571	.	+	1	Parent=Os11t0568700-02
Chr11	irgsp1_rep	three_prime_UTR	21206572	21207327	.	+	.	Parent=Os11t0568700-02
Chr11	irgsp1_rep	mRNA	21213554	21216313	.	-	.	ID=Os11t0568800-00;Name=Os11t0568800-00;Locus_id=Os11g0568800;Note=Leucine-rich repeat%2C typical subtype domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R2D9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os11t0568800-00;KEGG=Os11t0568800-00
Chr11	irgsp1_rep	CDS	21213554	21216313	.	-	0	Parent=Os11t0568800-00
Chr11	irgsp1_rep	mRNA	21213944	21214216	.	+	.	ID=Os11t0568950-00;Name=Os11t0568950-00;Locus_id=Os11g0568950;Note=Non-protein coding transcript.;Transcript_evidence=BT009298 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0568950-00
Chr11	irgsp1_rep	exon	21213944	21214216	.	+	.	Parent=Os11t0568950-00
Chr11	irgsp1_rep	mRNA	21243403	21246824	.	-	.	ID=Os11t0569300-00;Name=Os11t0569300-00;Locus_id=Os11g0569300;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R2D9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os11t0569300-00;KEGG=Os11t0569300-00
Chr11	irgsp1_rep	CDS	21244016	21246824	.	-	0	Parent=Os11t0569300-00
Chr11	irgsp1_rep	CDS	21243403	21243809	.	-	2	Parent=Os11t0569300-00
Chr11	irgsp1_rep	mRNA	21244402	21244676	.	+	.	ID=Os11t0569400-00;Name=Os11t0569400-00;Locus_id=Os11g0569400;Note=Non-protein coding transcript.;Transcript_evidence=BT009298 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0569400-00
Chr11	irgsp1_rep	exon	21244402	21244676	.	+	.	Parent=Os11t0569400-00
Chr11	irgsp1_rep	mRNA	21250919	21254683	.	-	.	ID=Os11t0569500-01;Name=Os11t0569500-01;Locus_id=Os11g0569500;Note=Similar to Receptor kinase-like protein.;Transcript_evidence=AK102251 (DDBJ%2C Best hit);ORF_evidence=Q2R2D9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033088G21;Expression=AK102251;TENOR=Os11t0569500-01;KEGG=Os11t0569500-01
Chr11	irgsp1_rep	five_prime_UTR	21254526	21254683	.	-	.	Parent=Os11t0569500-01
Chr11	irgsp1_rep	CDS	21251777	21254525	.	-	0	Parent=Os11t0569500-01
Chr11	irgsp1_rep	CDS	21251207	21251565	.	-	2	Parent=Os11t0569500-01
Chr11	irgsp1_rep	three_prime_UTR	21250919	21251206	.	-	.	Parent=Os11t0569500-01
Chr11	irgsp1_rep	mRNA	21261123	21265839	.	-	.	ID=Os11t0569600-01;Name=Os11t0569600-01;Locus_id=Os11g0569600;Note=Similar to Receptor kinase-like protein.;Transcript_evidence=AK111589 (DDBJ%2C Best hit);ORF_evidence=NP_001176608.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J013092C01;Oryzabase=21902;Expression=AK111589;TENOR=Os11t0569600-01;KEGG=Os11t0569600-01
Chr11	irgsp1_rep	five_prime_UTR	21265800	21265839	.	-	.	Parent=Os11t0569600-01
Chr11	irgsp1_rep	CDS	21262868	21265799	.	-	0	Parent=Os11t0569600-01
Chr11	irgsp1_rep	CDS	21261353	21261729	.	-	2	Parent=Os11t0569600-01
Chr11	irgsp1_rep	three_prime_UTR	21261123	21261352	.	-	.	Parent=Os11t0569600-01
Chr11	irgsp1_rep	mRNA	21273533	21277443	.	-	.	ID=Os11t0569733-01;Name=Os11t0569733-01;Locus_id=Os11g0569733;RAP-DB Gene Symbol Synonym(s)=XA21%2C Xa21;RAP-DB Gene Name Synonym(s)=XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 21;Note=Receptor kinase-like protein%2C Bacterial leaf blight resistance%2C Disease resistance;Transcript_evidence=Inferred from literature;ORF_evidence=Q2R2D5;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=Leucine-rich repeat domain superfamily (IPR032675),Protein kinase-like domain superfamily (IPR011009),Leucine-rich repeat-containing N-terminal%2C plant-type (IPR013210),Protein kinase domain (IPR000719),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat (IPR001611),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);Manual Curation=January 18%2C 2019;Literature_PMID=22735448,9286106,8525370;TENOR=Os11t0569733-00;Subcellular location=plasma membrane (GO:0005886), cortical endoplasmic reticulum (GO:0032541), perinuclear endoplasmic reticulum (GO:0097038), nucleus (GO:0005634) [treatment with Xoo]
Chr11	irgsp1_rep	CDS	21274731	21277443	.	-	0	Parent=Os11t0569733-01
Chr11	irgsp1_rep	CDS	21273533	21273933	.	-	2	Parent=Os11t0569733-01
Chr11	irgsp1_rep	mRNA	21284892	21289519	.	-	.	ID=Os11t0569800-01;Name=Os11t0569800-01;Locus_id=Os11g0569800;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK103869 (DDBJ%2C Best hit);ORF_evidence=Q2R2D4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033149H15;TENOR=Os11t0569800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	21289284	21289519	.	-	.	Parent=Os11t0569800-01
Chr11	irgsp1_rep	five_prime_UTR	21288554	21288865	.	-	.	Parent=Os11t0569800-01
Chr11	irgsp1_rep	five_prime_UTR	21287787	21288431	.	-	.	Parent=Os11t0569800-01
Chr11	irgsp1_rep	CDS	21285767	21287786	.	-	0	Parent=Os11t0569800-01
Chr11	irgsp1_rep	CDS	21285150	21285505	.	-	2	Parent=Os11t0569800-01
Chr11	irgsp1_rep	three_prime_UTR	21284892	21285149	.	-	.	Parent=Os11t0569800-01
Chr11	irgsp1_rep	mRNA	21297839	21301397	.	+	.	ID=Os11t0570000-01;Name=Os11t0570000-01;Locus_id=Os11g0570000;Note=Similar to Receptor kinase-like protein.;Transcript_evidence=AK111751 (DDBJ%2C Best hit);ORF_evidence=Q2R2D9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J023050J11;Expression=AK111751;TENOR=Os11t0570000-01;KEGG=Os11t0570000-01
Chr11	irgsp1_rep	five_prime_UTR	21297839	21297844	.	+	.	Parent=Os11t0570000-01
Chr11	irgsp1_rep	CDS	21297845	21299434	.	+	0	Parent=Os11t0570000-01
Chr11	irgsp1_rep	three_prime_UTR	21299435	21301397	.	+	.	Parent=Os11t0570000-01
Chr11	irgsp1_rep	mRNA	21324041	21324977	.	-	.	ID=Os11t0570400-01;Name=Os11t0570400-01;Locus_id=Os11g0570400;Note=Conserved hypothetical protein.;Transcript_evidence=AK070108 (DDBJ%2C Best hit);ORF_evidence=A2ZFH9 (UniProt);NIAS_FLcDNA=J023045F18;Expression=AK070108;TENOR=Os11t0570400-01;KEGG=Os11t0570400-01
Chr11	irgsp1_rep	five_prime_UTR	21324936	21324977	.	-	.	Parent=Os11t0570400-01
Chr11	irgsp1_rep	CDS	21324276	21324935	.	-	0	Parent=Os11t0570400-01
Chr11	irgsp1_rep	three_prime_UTR	21324041	21324275	.	-	.	Parent=Os11t0570400-01
Chr11	irgsp1_rep	mRNA	21337280	21337942	.	-	.	ID=Os11t0570825-00;Name=Os11t0570825-00;Locus_id=Os11g0570825;Note=Hypothetical protein.;Transcript_evidence=EU943103 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0570825-00
Chr11	irgsp1_rep	five_prime_UTR	21337925	21337942	.	-	.	Parent=Os11t0570825-00
Chr11	irgsp1_rep	CDS	21337418	21337924	.	-	0	Parent=Os11t0570825-00
Chr11	irgsp1_rep	three_prime_UTR	21337280	21337417	.	-	.	Parent=Os11t0570825-00
Chr11	irgsp1_rep	mRNA	21413596	21417634	.	+	.	ID=Os11t0571900-01;Name=Os11t0571900-01;Locus_id=Os11g0571900;Note=Targeting for Xklp2 family protein.;Transcript_evidence=AK073940 (DDBJ%2C Best hit);ORF_evidence=B6TK06 (UniProt);InterPro=Xklp2 targeting protein (IPR009675);NIAS_FLcDNA=J033076E07;Expression=AK073940;TENOR=Os11t0571900-01;KEGG=Os11t0571900-01
Chr11	irgsp1_rep	five_prime_UTR	21413596	21413856	.	+	.	Parent=Os11t0571900-01
Chr11	irgsp1_rep	CDS	21413857	21414015	.	+	0	Parent=Os11t0571900-01
Chr11	irgsp1_rep	CDS	21414103	21414310	.	+	0	Parent=Os11t0571900-01
Chr11	irgsp1_rep	CDS	21414404	21414462	.	+	2	Parent=Os11t0571900-01
Chr11	irgsp1_rep	CDS	21414561	21414619	.	+	0	Parent=Os11t0571900-01
Chr11	irgsp1_rep	CDS	21414838	21414915	.	+	1	Parent=Os11t0571900-01
Chr11	irgsp1_rep	CDS	21415003	21415102	.	+	1	Parent=Os11t0571900-01
Chr11	irgsp1_rep	CDS	21415203	21415274	.	+	0	Parent=Os11t0571900-01
Chr11	irgsp1_rep	CDS	21415356	21415463	.	+	0	Parent=Os11t0571900-01
Chr11	irgsp1_rep	CDS	21416876	21417325	.	+	0	Parent=Os11t0571900-01
Chr11	irgsp1_rep	three_prime_UTR	21417326	21417634	.	+	.	Parent=Os11t0571900-01
Chr11	irgsp1_rep	mRNA	21443052	21452902	.	+	.	ID=Os11t0572100-01;Name=Os11t0572100-01;Locus_id=Os11g0572100;CGSNL Gene Symbol=RFC1;CGSNL Gene Name=REPLICATION FACTOR C SUBUNIT 1;Oryzabase Gene Symbol Synonym(s)=OsRFC1;Oryzabase Gene Name Synonym(s)=replication factor C subunit 1%2C replication factor C1;Note=Similar to DNA ligase (EC 6.5.1.2).;Transcript_evidence=AK070564 (DDBJ%2C Best hit);ORF_evidence=Q84N08 (UniProt);GO=Biological Process: DNA replication (GO:0006260),Cellular Component: intracellular (GO:0005622),Cellular Component: DNA replication factor C complex (GO:0005663),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA clamp loader activity (GO:0003689),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=BRCT (IPR001357),ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),DNA polymerase III%2C clamp loader complex%2C gamma/delta/delta subunit%2C C-terminal (IPR008921),DNA replication factor C%2C large subunit (IPR012178),DNA replication factor RFC1%2C C-terminal (IPR013725);NIAS_FLcDNA=J023055J17;Oryzabase=21293;Expression=AK070564;TENOR=Os11t0572100-01;KEGG=Os11t0572100-01 (EC:6.5.1.2)
Chr11	irgsp1_rep	five_prime_UTR	21443052	21443453	.	+	.	Parent=Os11t0572100-01
Chr11	irgsp1_rep	CDS	21443454	21443456	.	+	0	Parent=Os11t0572100-01
Chr11	irgsp1_rep	CDS	21443579	21443713	.	+	0	Parent=Os11t0572100-01
Chr11	irgsp1_rep	CDS	21444285	21444902	.	+	0	Parent=Os11t0572100-01
Chr11	irgsp1_rep	CDS	21444972	21445039	.	+	0	Parent=Os11t0572100-01
Chr11	irgsp1_rep	CDS	21445188	21445263	.	+	1	Parent=Os11t0572100-01
Chr11	irgsp1_rep	CDS	21445340	21445401	.	+	0	Parent=Os11t0572100-01
Chr11	irgsp1_rep	CDS	21445481	21445632	.	+	1	Parent=Os11t0572100-01
Chr11	irgsp1_rep	CDS	21445918	21446081	.	+	2	Parent=Os11t0572100-01
Chr11	irgsp1_rep	CDS	21446158	21446346	.	+	0	Parent=Os11t0572100-01
Chr11	irgsp1_rep	CDS	21446446	21446567	.	+	0	Parent=Os11t0572100-01
Chr11	irgsp1_rep	CDS	21446649	21446856	.	+	1	Parent=Os11t0572100-01
Chr11	irgsp1_rep	CDS	21447267	21447320	.	+	0	Parent=Os11t0572100-01
Chr11	irgsp1_rep	CDS	21447486	21447655	.	+	0	Parent=Os11t0572100-01
Chr11	irgsp1_rep	CDS	21448294	21448384	.	+	1	Parent=Os11t0572100-01
Chr11	irgsp1_rep	CDS	21449039	21449220	.	+	0	Parent=Os11t0572100-01
Chr11	irgsp1_rep	CDS	21449305	21449344	.	+	1	Parent=Os11t0572100-01
Chr11	irgsp1_rep	CDS	21449434	21449558	.	+	0	Parent=Os11t0572100-01
Chr11	irgsp1_rep	CDS	21450401	21450473	.	+	1	Parent=Os11t0572100-01
Chr11	irgsp1_rep	CDS	21450851	21450943	.	+	0	Parent=Os11t0572100-01
Chr11	irgsp1_rep	CDS	21451511	21451757	.	+	0	Parent=Os11t0572100-01
Chr11	irgsp1_rep	CDS	21452334	21452393	.	+	2	Parent=Os11t0572100-01
Chr11	irgsp1_rep	CDS	21452490	21452623	.	+	2	Parent=Os11t0572100-01
Chr11	irgsp1_rep	three_prime_UTR	21452624	21452902	.	+	.	Parent=Os11t0572100-01
Chr11	irgsp1_rep	mRNA	21443125	21452903	.	+	.	ID=Os11t0572100-02;Name=Os11t0572100-02;Locus_id=Os11g0572100;CGSNL Gene Symbol=RFC1;CGSNL Gene Name=REPLICATION FACTOR C SUBUNIT 1;Oryzabase Gene Symbol Synonym(s)=OsRFC1;Oryzabase Gene Name Synonym(s)=replication factor C subunit 1%2C replication factor C1;Note=Similar to DNA ligase (EC 6.5.1.2).;Transcript_evidence=AK101875 (DDBJ%2C Best hit);ORF_evidence=Q84N08 (UniProt);GO=Biological Process: DNA replication (GO:0006260),Cellular Component: intracellular (GO:0005622),Cellular Component: DNA replication factor C complex (GO:0005663),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA clamp loader activity (GO:0003689),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=BRCT (IPR001357),ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),DNA polymerase III%2C clamp loader complex%2C gamma/delta/delta subunit%2C C-terminal (IPR008921),DNA replication factor C%2C large subunit (IPR012178),DNA replication factor RFC1%2C C-terminal (IPR013725);NIAS_FLcDNA=J033070H03;Oryzabase=21293;Expression=AK101875;TENOR=Os11t0572100-02;KEGG=Os11t0572100-02 (EC:6.5.1.2)
Chr11	irgsp1_rep	five_prime_UTR	21443125	21443453	.	+	.	Parent=Os11t0572100-02
Chr11	irgsp1_rep	CDS	21443454	21443456	.	+	0	Parent=Os11t0572100-02
Chr11	irgsp1_rep	CDS	21443579	21443713	.	+	0	Parent=Os11t0572100-02
Chr11	irgsp1_rep	CDS	21444285	21444902	.	+	0	Parent=Os11t0572100-02
Chr11	irgsp1_rep	CDS	21444972	21445039	.	+	0	Parent=Os11t0572100-02
Chr11	irgsp1_rep	CDS	21445188	21445263	.	+	1	Parent=Os11t0572100-02
Chr11	irgsp1_rep	CDS	21445340	21445401	.	+	0	Parent=Os11t0572100-02
Chr11	irgsp1_rep	CDS	21445481	21445632	.	+	1	Parent=Os11t0572100-02
Chr11	irgsp1_rep	CDS	21445918	21446081	.	+	2	Parent=Os11t0572100-02
Chr11	irgsp1_rep	CDS	21446158	21446346	.	+	0	Parent=Os11t0572100-02
Chr11	irgsp1_rep	CDS	21446446	21446567	.	+	0	Parent=Os11t0572100-02
Chr11	irgsp1_rep	CDS	21446649	21446856	.	+	1	Parent=Os11t0572100-02
Chr11	irgsp1_rep	CDS	21447267	21447320	.	+	0	Parent=Os11t0572100-02
Chr11	irgsp1_rep	CDS	21447486	21447655	.	+	0	Parent=Os11t0572100-02
Chr11	irgsp1_rep	CDS	21448294	21448384	.	+	1	Parent=Os11t0572100-02
Chr11	irgsp1_rep	CDS	21449039	21449220	.	+	0	Parent=Os11t0572100-02
Chr11	irgsp1_rep	CDS	21449305	21449344	.	+	1	Parent=Os11t0572100-02
Chr11	irgsp1_rep	CDS	21449434	21449558	.	+	0	Parent=Os11t0572100-02
Chr11	irgsp1_rep	CDS	21450401	21450473	.	+	1	Parent=Os11t0572100-02
Chr11	irgsp1_rep	CDS	21450851	21450943	.	+	0	Parent=Os11t0572100-02
Chr11	irgsp1_rep	CDS	21451511	21451757	.	+	0	Parent=Os11t0572100-02
Chr11	irgsp1_rep	CDS	21452334	21452393	.	+	2	Parent=Os11t0572100-02
Chr11	irgsp1_rep	CDS	21452490	21452623	.	+	2	Parent=Os11t0572100-02
Chr11	irgsp1_rep	three_prime_UTR	21452624	21452903	.	+	.	Parent=Os11t0572100-02
Chr11	irgsp1_rep	mRNA	21444970	21452900	.	+	.	ID=Os11t0572100-03;Name=Os11t0572100-03;Locus_id=Os11g0572100;CGSNL Gene Symbol=RFC1;CGSNL Gene Name=REPLICATION FACTOR C SUBUNIT 1;Oryzabase Gene Symbol Synonym(s)=OsRFC1;Oryzabase Gene Name Synonym(s)=replication factor C subunit 1%2C replication factor C1;Note=Similar to Replication factor C 110 kDa subunit.;Transcript_evidence=AK102991 (DDBJ%2C Best hit);ORF_evidence=Q84N08 (UniProt);GO=Biological Process: DNA replication (GO:0006260),Cellular Component: intracellular (GO:0005622),Cellular Component: DNA replication factor C complex (GO:0005663),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA clamp loader activity (GO:0003689),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=BRCT (IPR001357),ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),DNA polymerase III%2C clamp loader complex%2C gamma/delta/delta subunit%2C C-terminal (IPR008921),DNA replication factor C%2C large subunit (IPR012178),DNA replication factor RFC1%2C C-terminal (IPR013725);NIAS_FLcDNA=J033116D16;Oryzabase=21293;Expression=AK102991;TENOR=Os11t0572100-03;KEGG=Os11t0572100-03
Chr11	irgsp1_rep	five_prime_UTR	21444970	21444971	.	+	.	Parent=Os11t0572100-03
Chr11	irgsp1_rep	CDS	21444972	21445039	.	+	0	Parent=Os11t0572100-03
Chr11	irgsp1_rep	CDS	21445188	21445263	.	+	1	Parent=Os11t0572100-03
Chr11	irgsp1_rep	CDS	21445340	21445401	.	+	0	Parent=Os11t0572100-03
Chr11	irgsp1_rep	CDS	21445481	21445632	.	+	1	Parent=Os11t0572100-03
Chr11	irgsp1_rep	CDS	21445918	21446081	.	+	2	Parent=Os11t0572100-03
Chr11	irgsp1_rep	CDS	21446158	21446346	.	+	0	Parent=Os11t0572100-03
Chr11	irgsp1_rep	CDS	21446446	21446567	.	+	0	Parent=Os11t0572100-03
Chr11	irgsp1_rep	CDS	21446649	21446856	.	+	1	Parent=Os11t0572100-03
Chr11	irgsp1_rep	CDS	21447267	21447320	.	+	0	Parent=Os11t0572100-03
Chr11	irgsp1_rep	CDS	21447486	21447655	.	+	0	Parent=Os11t0572100-03
Chr11	irgsp1_rep	CDS	21448294	21448384	.	+	1	Parent=Os11t0572100-03
Chr11	irgsp1_rep	CDS	21449039	21449220	.	+	0	Parent=Os11t0572100-03
Chr11	irgsp1_rep	CDS	21449305	21449344	.	+	1	Parent=Os11t0572100-03
Chr11	irgsp1_rep	CDS	21449434	21449558	.	+	0	Parent=Os11t0572100-03
Chr11	irgsp1_rep	CDS	21450401	21450473	.	+	1	Parent=Os11t0572100-03
Chr11	irgsp1_rep	CDS	21450851	21450943	.	+	0	Parent=Os11t0572100-03
Chr11	irgsp1_rep	CDS	21451511	21451757	.	+	0	Parent=Os11t0572100-03
Chr11	irgsp1_rep	CDS	21452334	21452393	.	+	2	Parent=Os11t0572100-03
Chr11	irgsp1_rep	CDS	21452490	21452623	.	+	2	Parent=Os11t0572100-03
Chr11	irgsp1_rep	three_prime_UTR	21452624	21452900	.	+	.	Parent=Os11t0572100-03
Chr11	irgsp1_rep	mRNA	21449159	21452910	.	+	.	ID=Os11t0572100-04;Name=Os11t0572100-04;Locus_id=Os11g0572100;CGSNL Gene Symbol=RFC1;CGSNL Gene Name=REPLICATION FACTOR C SUBUNIT 1;Oryzabase Gene Symbol Synonym(s)=OsRFC1;Oryzabase Gene Name Synonym(s)=replication factor C subunit 1%2C replication factor C1;Note=Similar to Replication factor C 110 kDa subunit.;Transcript_evidence=AK060194 (DDBJ%2C Best hit);ORF_evidence=Q84N08 (UniProt);GO=Biological Process: DNA replication (GO:0006260),Cellular Component: DNA replication factor C complex (GO:0005663),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA clamp loader activity (GO:0003689),Molecular Function: ATP binding (GO:0005524);InterPro=DNA polymerase III%2C clamp loader complex%2C gamma/delta/delta subunit%2C C-terminal (IPR008921),DNA replication factor RFC1%2C C-terminal (IPR013725);NIAS_FLcDNA=001-001-E12;Oryzabase=21293;Expression=AK060194;TENOR=Os11t0572100-04;KEGG=Os11t0572100-04
Chr11	irgsp1_rep	CDS	21449159	21449220	.	+	0	Parent=Os11t0572100-04
Chr11	irgsp1_rep	CDS	21449305	21449344	.	+	1	Parent=Os11t0572100-04
Chr11	irgsp1_rep	CDS	21449434	21449558	.	+	0	Parent=Os11t0572100-04
Chr11	irgsp1_rep	CDS	21450401	21450473	.	+	1	Parent=Os11t0572100-04
Chr11	irgsp1_rep	CDS	21450851	21450943	.	+	0	Parent=Os11t0572100-04
Chr11	irgsp1_rep	CDS	21451511	21451757	.	+	0	Parent=Os11t0572100-04
Chr11	irgsp1_rep	CDS	21452334	21452393	.	+	2	Parent=Os11t0572100-04
Chr11	irgsp1_rep	CDS	21452490	21452623	.	+	2	Parent=Os11t0572100-04
Chr11	irgsp1_rep	three_prime_UTR	21452624	21452910	.	+	.	Parent=Os11t0572100-04
Chr11	irgsp1_rep	mRNA	21462382	21464486	.	-	.	ID=Os11t0572200-01;Name=Os11t0572200-01;Locus_id=Os11g0572200;CGSNL Gene Symbol=EXO70FX8;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX8;Oryzabase Gene Symbol Synonym(s)=OsEXO70FX8%2C OsExo70FX8%2C OrysaFX8_Exo70;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein FX8;Note=Exo70 exocyst complex subunit family protein.;Transcript_evidence=AK109785 (DDBJ%2C Best hit);ORF_evidence=A3CCH7 (UniProt);GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exo70 exocyst complex subunit (IPR004140),Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=002-147-C11;Oryzabase=20350;Expression=AK109785;TENOR=Os11t0572200-01;KEGG=Os11t0572200-01
Chr11	irgsp1_rep	five_prime_UTR	21464307	21464486	.	-	.	Parent=Os11t0572200-01
Chr11	irgsp1_rep	CDS	21463108	21464306	.	-	0	Parent=Os11t0572200-01
Chr11	irgsp1_rep	CDS	21462941	21463043	.	-	1	Parent=Os11t0572200-01
Chr11	irgsp1_rep	three_prime_UTR	21462382	21462940	.	-	.	Parent=Os11t0572200-01
Chr11	irgsp1_rep	mRNA	21468751	21472160	.	-	.	ID=Os11t0572301-01;Name=Os11t0572301-01;Locus_id=Os11g0572301;Note=NB-ARC domain containing protein.;Transcript_evidence=AK243461 (DDBJ%2C Best hit);ORF_evidence=A2ZFJ1 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: protein binding (GO:0005515),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),Leucine-rich repeat (IPR001611),NB-ARC (IPR002182),Leucine-rich repeat%2C typical subtype (IPR003591);NIAS_FLcDNA=J100071A18;TENOR=Os11t0572301-01;KEGG=Os11t0572301-01
Chr11	irgsp1_rep	five_prime_UTR	21472106	21472160	.	-	.	Parent=Os11t0572301-01
Chr11	irgsp1_rep	CDS	21471473	21472105	.	-	0	Parent=Os11t0572301-01
Chr11	irgsp1_rep	CDS	21469073	21471196	.	-	0	Parent=Os11t0572301-01
Chr11	irgsp1_rep	three_prime_UTR	21468751	21469072	.	-	.	Parent=Os11t0572301-01
Chr11	irgsp1_rep	mRNA	21475708	21479641	.	+	.	ID=Os11t0572400-01;Name=Os11t0572400-01;Locus_id=Os11g0572400;Note=Similar to ST3GAL-I sialyltransferase (Fragment).;Transcript_evidence=AK101277 (DDBJ%2C Best hit);ORF_evidence=Q2WBH4 (UniProt);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: integral to Golgi membrane (GO:0030173),Molecular Function: sialyltransferase activity (GO:0008373);InterPro=Glycosyl transferase%2C family 29 (IPR001675);NIAS_FLcDNA=J033033C01;Expression=AK101277;TENOR=Os11t0572400-01;KEGG=Os11t0572400-01 (EC:2.4.99.-)
Chr11	irgsp1_rep	five_prime_UTR	21475708	21475758	.	+	.	Parent=Os11t0572400-01
Chr11	irgsp1_rep	CDS	21475759	21475894	.	+	0	Parent=Os11t0572400-01
Chr11	irgsp1_rep	CDS	21475976	21476055	.	+	2	Parent=Os11t0572400-01
Chr11	irgsp1_rep	CDS	21476629	21476715	.	+	0	Parent=Os11t0572400-01
Chr11	irgsp1_rep	CDS	21476818	21476895	.	+	0	Parent=Os11t0572400-01
Chr11	irgsp1_rep	CDS	21476976	21477067	.	+	0	Parent=Os11t0572400-01
Chr11	irgsp1_rep	CDS	21477161	21477362	.	+	1	Parent=Os11t0572400-01
Chr11	irgsp1_rep	CDS	21477673	21477763	.	+	0	Parent=Os11t0572400-01
Chr11	irgsp1_rep	CDS	21478192	21478250	.	+	2	Parent=Os11t0572400-01
Chr11	irgsp1_rep	CDS	21478442	21478590	.	+	0	Parent=Os11t0572400-01
Chr11	irgsp1_rep	CDS	21478691	21478772	.	+	1	Parent=Os11t0572400-01
Chr11	irgsp1_rep	CDS	21478857	21479243	.	+	0	Parent=Os11t0572400-01
Chr11	irgsp1_rep	three_prime_UTR	21479244	21479641	.	+	.	Parent=Os11t0572400-01
Chr11	irgsp1_rep	mRNA	21480217	21485122	.	-	.	ID=Os11t0572500-01;Name=Os11t0572500-01;Locus_id=Os11g0572500;Oryzabase Gene Symbol Synonym(s)=OsRFP%2C RFP%2C OsAIR2%2C AIR2;Oryzabase Gene Name Synonym(s)=RING finger protein%2C arsenic-induced RING finger E3 ligase 2%2C As-Induced RING E3 ligase 2;Note=Similar to Zinc finger%2C RING-type.;Transcript_evidence=AK068493 (DDBJ%2C Best hit);ORF_evidence=B4FRI2 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=J013157D07;Oryzabase=21159;TENOR=Os11t0572500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	21484953	21485122	.	-	.	Parent=Os11t0572500-01
Chr11	irgsp1_rep	five_prime_UTR	21483676	21483700	.	-	.	Parent=Os11t0572500-01
Chr11	irgsp1_rep	CDS	21483535	21483675	.	-	0	Parent=Os11t0572500-01
Chr11	irgsp1_rep	CDS	21483404	21483450	.	-	0	Parent=Os11t0572500-01
Chr11	irgsp1_rep	CDS	21482184	21482250	.	-	1	Parent=Os11t0572500-01
Chr11	irgsp1_rep	CDS	21482046	21482081	.	-	0	Parent=Os11t0572500-01
Chr11	irgsp1_rep	three_prime_UTR	21481978	21482045	.	-	.	Parent=Os11t0572500-01
Chr11	irgsp1_rep	three_prime_UTR	21481490	21481875	.	-	.	Parent=Os11t0572500-01
Chr11	irgsp1_rep	three_prime_UTR	21481296	21481406	.	-	.	Parent=Os11t0572500-01
Chr11	irgsp1_rep	three_prime_UTR	21480829	21481210	.	-	.	Parent=Os11t0572500-01
Chr11	irgsp1_rep	three_prime_UTR	21480217	21480470	.	-	.	Parent=Os11t0572500-01
Chr11	irgsp1_rep	mRNA	21480230	21481409	.	-	.	ID=Os11t0572500-02;Name=Os11t0572500-02;Locus_id=Os11g0572500;Oryzabase Gene Symbol Synonym(s)=OsRFP%2C RFP%2C OsAIR2%2C AIR2;Oryzabase Gene Name Synonym(s)=RING finger protein%2C arsenic-induced RING finger E3 ligase 2%2C As-Induced RING E3 ligase 2;Note=Similar to predicted protein.;Transcript_evidence=AK104853 (DDBJ%2C Best hit);ORF_evidence=B4FRI2 (UniProt);NIAS_FLcDNA=001-043-B04;Oryzabase=21159;Expression=AK104853;TENOR=Os11t0572500-02;KEGG=Os11t0572500-02
Chr11	irgsp1_rep	five_prime_UTR	21481409	21481409	.	-	.	Parent=Os11t0572500-02
Chr11	irgsp1_rep	CDS	21481296	21481408	.	-	0	Parent=Os11t0572500-02
Chr11	irgsp1_rep	CDS	21480883	21481210	.	-	1	Parent=Os11t0572500-02
Chr11	irgsp1_rep	three_prime_UTR	21480829	21480882	.	-	.	Parent=Os11t0572500-02
Chr11	irgsp1_rep	three_prime_UTR	21480230	21480470	.	-	.	Parent=Os11t0572500-02
Chr11	irgsp1_rep	mRNA	21485902	21490094	.	+	.	ID=Os11t0572700-01;Name=Os11t0572700-01;Locus_id=Os11g0572700;RAP-DB Gene Symbol Synonym(s)=OsCRTISO%2C MHZ5%2C MHZ5/CRTISO%2C CRTISO;RAP-DB Gene Name Synonym(s)=carotenoid isomerase;Oryzabase Gene Symbol Synonym(s)=OsCRTISO%2C MHZ5%2C MHZ5/CRTISO%2C CRTISO;Oryzabase Gene Name Synonym(s)=carotenoid isomerase;Note=Carotenoid isomerase%2C Carotenoid biosynthesis%2C Root and coleoptile growth;Transcript_evidence=Inferred from literature;ORF_evidence=Q2R2A6;GO=Biological Process: carotenoid biosynthetic process (GO:0016117),Molecular Function: isomerase activity (GO:0016853);InterPro=Carotene isomerase (IPR014101);Manual Curation=May 27%2C 2015;Literature_PMID=25841037;Oryzabase=11631;TENOR=Os11t0572700-00
Chr11	irgsp1_rep	five_prime_UTR	21485902	21485977	.	+	.	Parent=Os11t0572700-01
Chr11	irgsp1_rep	CDS	21485978	21486367	.	+	0	Parent=Os11t0572700-01
Chr11	irgsp1_rep	CDS	21486867	21487073	.	+	0	Parent=Os11t0572700-01
Chr11	irgsp1_rep	CDS	21487197	21487296	.	+	0	Parent=Os11t0572700-01
Chr11	irgsp1_rep	CDS	21487507	21487589	.	+	2	Parent=Os11t0572700-01
Chr11	irgsp1_rep	CDS	21487685	21487741	.	+	0	Parent=Os11t0572700-01
Chr11	irgsp1_rep	CDS	21487819	21487971	.	+	0	Parent=Os11t0572700-01
Chr11	irgsp1_rep	CDS	21488045	21488123	.	+	0	Parent=Os11t0572700-01
Chr11	irgsp1_rep	CDS	21488308	21488456	.	+	2	Parent=Os11t0572700-01
Chr11	irgsp1_rep	CDS	21488570	21488704	.	+	0	Parent=Os11t0572700-01
Chr11	irgsp1_rep	CDS	21488812	21488925	.	+	0	Parent=Os11t0572700-01
Chr11	irgsp1_rep	CDS	21489094	21489204	.	+	0	Parent=Os11t0572700-01
Chr11	irgsp1_rep	CDS	21489294	21489402	.	+	0	Parent=Os11t0572700-01
Chr11	irgsp1_rep	CDS	21489579	21489652	.	+	2	Parent=Os11t0572700-01
Chr11	irgsp1_rep	three_prime_UTR	21489653	21490094	.	+	.	Parent=Os11t0572700-01
Chr11	irgsp1_rep	mRNA	21490564	21493265	.	-	.	ID=Os11t0572800-01;Name=Os11t0572800-01;Locus_id=Os11g0572800;Oryzabase Gene Symbol Synonym(s)=JMJ710%2C OsFbox611%2C Os_F0574;Oryzabase Gene Name Synonym(s)=Jumonji 710%2C F-box protein 611;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK068220 (DDBJ%2C Best hit);ORF_evidence=NP_001147915.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Transcription factor jumonji/aspartyl beta-hydroxylase (IPR003347),Transcription factor jumonji (IPR013129),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013145N15;Oryzabase=15218;Expression=AK068220;TENOR=Os11t0572800-01;KEGG=Os11t0572800-01
Chr11	irgsp1_rep	five_prime_UTR	21493210	21493265	.	-	.	Parent=Os11t0572800-01
Chr11	irgsp1_rep	CDS	21491888	21493209	.	-	0	Parent=Os11t0572800-01
Chr11	irgsp1_rep	CDS	21490830	21491073	.	-	1	Parent=Os11t0572800-01
Chr11	irgsp1_rep	three_prime_UTR	21490564	21490829	.	-	.	Parent=Os11t0572800-01
Chr11	irgsp1_rep	mRNA	21495107	21495861	.	-	.	ID=Os11t0572900-00;Name=Os11t0572900-00;Locus_id=Os11g0572900;Note=Similar to SMC5 protein.;Transcript_evidence=EU943061 (DDBJ);ORF_evidence=Q8GU53 (UniProt);TENOR=Os11t0572900-00;KEGG=Os11t0572900-00
Chr11	irgsp1_rep	five_prime_UTR	21495860	21495861	.	-	.	Parent=Os11t0572900-00
Chr11	irgsp1_rep	CDS	21495596	21495859	.	-	0	Parent=Os11t0572900-00
Chr11	irgsp1_rep	CDS	21495328	21495480	.	-	0	Parent=Os11t0572900-00
Chr11	irgsp1_rep	CDS	21495112	21495180	.	-	0	Parent=Os11t0572900-00
Chr11	irgsp1_rep	three_prime_UTR	21495107	21495111	.	-	.	Parent=Os11t0572900-00
Chr11	irgsp1_rep	mRNA	21500549	21514325	.	-	.	ID=Os11t0573000-01;Name=Os11t0573000-01;Locus_id=Os11g0573000;CGSNL Gene Symbol=UBP5-3;CGSNL Gene Name=UBIQUITIN-SPECIFIC PROCESSING PROTEASE 5-3;Oryzabase Gene Symbol Synonym(s)=OsUBP5-3%2C OsUBP21%2C UBP21;Oryzabase Gene Name Synonym(s)=ubiquitin-specific processing protease 5-3%2C Ubiquitin-specific protease 21;Note=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 family protein.;Transcript_evidence=AK067123 (DDBJ%2C Best hit);ORF_evidence=Q2R2A3 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Molecular Function: ubiquitin thiolesterase activity (GO:0004221);InterPro=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (IPR001394),Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2%2C conserved site (IPR018200);NIAS_FLcDNA=J013096M22;Oryzabase=22884;Expression=AK067123;TENOR=Os11t0573000-01;KEGG=Os11t0573000-01 (EC:3.1.2.15)
Chr11	irgsp1_rep	five_prime_UTR	21514325	21514325	.	-	.	Parent=Os11t0573000-01
Chr11	irgsp1_rep	CDS	21514181	21514324	.	-	0	Parent=Os11t0573000-01
Chr11	irgsp1_rep	CDS	21513880	21514098	.	-	0	Parent=Os11t0573000-01
Chr11	irgsp1_rep	CDS	21513702	21513810	.	-	0	Parent=Os11t0573000-01
Chr11	irgsp1_rep	CDS	21513496	21513611	.	-	2	Parent=Os11t0573000-01
Chr11	irgsp1_rep	CDS	21513167	21513265	.	-	0	Parent=Os11t0573000-01
Chr11	irgsp1_rep	CDS	21511143	21511252	.	-	0	Parent=Os11t0573000-01
Chr11	irgsp1_rep	CDS	21510492	21510566	.	-	1	Parent=Os11t0573000-01
Chr11	irgsp1_rep	CDS	21510413	21510413	.	-	1	Parent=Os11t0573000-01
Chr11	irgsp1_rep	three_prime_UTR	21509891	21510412	.	-	.	Parent=Os11t0573000-01
Chr11	irgsp1_rep	three_prime_UTR	21509562	21509640	.	-	.	Parent=Os11t0573000-01
Chr11	irgsp1_rep	three_prime_UTR	21509314	21509460	.	-	.	Parent=Os11t0573000-01
Chr11	irgsp1_rep	three_prime_UTR	21509004	21509084	.	-	.	Parent=Os11t0573000-01
Chr11	irgsp1_rep	three_prime_UTR	21508784	21508903	.	-	.	Parent=Os11t0573000-01
Chr11	irgsp1_rep	three_prime_UTR	21508538	21508660	.	-	.	Parent=Os11t0573000-01
Chr11	irgsp1_rep	three_prime_UTR	21508099	21508176	.	-	.	Parent=Os11t0573000-01
Chr11	irgsp1_rep	three_prime_UTR	21507855	21507943	.	-	.	Parent=Os11t0573000-01
Chr11	irgsp1_rep	three_prime_UTR	21507661	21507770	.	-	.	Parent=Os11t0573000-01
Chr11	irgsp1_rep	three_prime_UTR	21507383	21507450	.	-	.	Parent=Os11t0573000-01
Chr11	irgsp1_rep	three_prime_UTR	21507188	21507298	.	-	.	Parent=Os11t0573000-01
Chr11	irgsp1_rep	three_prime_UTR	21504729	21504784	.	-	.	Parent=Os11t0573000-01
Chr11	irgsp1_rep	three_prime_UTR	21504457	21504634	.	-	.	Parent=Os11t0573000-01
Chr11	irgsp1_rep	three_prime_UTR	21504260	21504361	.	-	.	Parent=Os11t0573000-01
Chr11	irgsp1_rep	three_prime_UTR	21504108	21504179	.	-	.	Parent=Os11t0573000-01
Chr11	irgsp1_rep	three_prime_UTR	21503381	21503446	.	-	.	Parent=Os11t0573000-01
Chr11	irgsp1_rep	three_prime_UTR	21503181	21503246	.	-	.	Parent=Os11t0573000-01
Chr11	irgsp1_rep	three_prime_UTR	21502961	21503044	.	-	.	Parent=Os11t0573000-01
Chr11	irgsp1_rep	three_prime_UTR	21502734	21502850	.	-	.	Parent=Os11t0573000-01
Chr11	irgsp1_rep	three_prime_UTR	21502202	21502276	.	-	.	Parent=Os11t0573000-01
Chr11	irgsp1_rep	three_prime_UTR	21502019	21502105	.	-	.	Parent=Os11t0573000-01
Chr11	irgsp1_rep	three_prime_UTR	21500549	21501217	.	-	.	Parent=Os11t0573000-01
Chr11	irgsp1_rep	mRNA	21500589	21503420	.	-	.	ID=Os11t0573000-02;Name=Os11t0573000-02;Locus_id=Os11g0573000;CGSNL Gene Symbol=UBP5-3;CGSNL Gene Name=UBIQUITIN-SPECIFIC PROCESSING PROTEASE 5-3;Oryzabase Gene Symbol Synonym(s)=OsUBP5-3%2C OsUBP21%2C UBP21;Oryzabase Gene Name Synonym(s)=ubiquitin-specific processing protease 5-3%2C Ubiquitin-specific protease 21;Note=Similar to Ubiquitin carboxyl-terminal hydrolase family protein%2C expressed.;Transcript_evidence=AK059481 (DDBJ%2C Best hit);ORF_evidence=Q2R2A3 (UniProt);NIAS_FLcDNA=001-028-F05;Oryzabase=22884;Expression=AK059481;TENOR=Os11t0573000-02;KEGG=Os11t0573000-02 (EC:3.1.2.15)
Chr11	irgsp1_rep	five_prime_UTR	21503420	21503420	.	-	.	Parent=Os11t0573000-02
Chr11	irgsp1_rep	CDS	21503381	21503419	.	-	0	Parent=Os11t0573000-02
Chr11	irgsp1_rep	CDS	21503181	21503246	.	-	0	Parent=Os11t0573000-02
Chr11	irgsp1_rep	CDS	21502961	21503044	.	-	0	Parent=Os11t0573000-02
Chr11	irgsp1_rep	CDS	21502734	21502850	.	-	0	Parent=Os11t0573000-02
Chr11	irgsp1_rep	CDS	21502202	21502276	.	-	0	Parent=Os11t0573000-02
Chr11	irgsp1_rep	CDS	21502019	21502105	.	-	0	Parent=Os11t0573000-02
Chr11	irgsp1_rep	CDS	21501176	21501217	.	-	0	Parent=Os11t0573000-02
Chr11	irgsp1_rep	three_prime_UTR	21500589	21501175	.	-	.	Parent=Os11t0573000-02
Chr11	irgsp1_rep	mRNA	21517623	21517943	.	+	.	ID=Os11t0573100-00;Name=Os11t0573100-00;Locus_id=Os11g0573100;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001068130.1 (RefSeq);TENOR=Os11t0573100-00;KEGG=Os11t0573100-00
Chr11	irgsp1_rep	CDS	21517623	21517943	.	+	0	Parent=Os11t0573100-00
Chr11	irgsp1_rep	mRNA	21524812	21527119	.	+	.	ID=Os11t0573200-01;Name=Os11t0573200-01;Locus_id=Os11g0573200;Note=Similar to Zinc knuckle family protein%2C expressed.;Transcript_evidence=AK059001 (DDBJ%2C Best hit);ORF_evidence=Q2R2A2 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Zinc finger%2C CCHC retroviral-type (IPR013084);NIAS_FLcDNA=001-020-G10;TENOR=Os11t0573200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	21524812	21525026	.	+	.	Parent=Os11t0573200-01
Chr11	irgsp1_rep	five_prime_UTR	21525108	21525309	.	+	.	Parent=Os11t0573200-01
Chr11	irgsp1_rep	five_prime_UTR	21525543	21525662	.	+	.	Parent=Os11t0573200-01
Chr11	irgsp1_rep	CDS	21525663	21525704	.	+	0	Parent=Os11t0573200-01
Chr11	irgsp1_rep	CDS	21526147	21526263	.	+	0	Parent=Os11t0573200-01
Chr11	irgsp1_rep	CDS	21526395	21526502	.	+	0	Parent=Os11t0573200-01
Chr11	irgsp1_rep	CDS	21526589	21527020	.	+	0	Parent=Os11t0573200-01
Chr11	irgsp1_rep	three_prime_UTR	21527021	21527119	.	+	.	Parent=Os11t0573200-01
Chr11	irgsp1_rep	mRNA	21530692	21531951	.	+	.	ID=Os11t0573350-00;Name=Os11t0573350-00;Locus_id=Os11g0573350;Note=Similar to photoperiod responsive protein.;Transcript_evidence=BT040991 (DDBJ);ORF_evidence=NP_001150615.1 (RefSeq);TENOR=Os11t0573350-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	21530692	21531138	.	+	.	Parent=Os11t0573350-00
Chr11	irgsp1_rep	CDS	21531139	21531951	.	+	0	Parent=Os11t0573350-00
Chr11	irgsp1_rep	mRNA	21544075	21555553	.	-	.	ID=Os11t0573800-00;Name=Os11t0573800-00;Locus_id=Os11g0573800;Oryzabase Gene Symbol Synonym(s)=OsDjC75;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C75;Note=Hypothetical conserved gene.;Transcript_evidence=AK121330 (DDBJ%2C Secondary hit);ORF_evidence=A2ZFM6 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Heat shock protein DnaJ%2C conserved site (IPR018253),Domain of unknown function DUF3444 (IPR024593);Oryzabase=12232;Expression=AK121330;TENOR=Os11t0573800-00;KEGG=Os11t0573800-00
Chr11	irgsp1_rep	five_prime_UTR	21555432	21555553	.	-	.	Parent=Os11t0573800-00
Chr11	irgsp1_rep	five_prime_UTR	21554774	21554846	.	-	.	Parent=Os11t0573800-00
Chr11	irgsp1_rep	CDS	21554264	21554773	.	-	0	Parent=Os11t0573800-00
Chr11	irgsp1_rep	CDS	21550363	21550563	.	-	0	Parent=Os11t0573800-00
Chr11	irgsp1_rep	CDS	21549283	21550350	.	-	0	Parent=Os11t0573800-00
Chr11	irgsp1_rep	CDS	21548448	21548805	.	-	0	Parent=Os11t0573800-00
Chr11	irgsp1_rep	CDS	21548400	21548439	.	-	2	Parent=Os11t0573800-00
Chr11	irgsp1_rep	CDS	21547828	21548311	.	-	1	Parent=Os11t0573800-00
Chr11	irgsp1_rep	CDS	21544863	21544958	.	-	0	Parent=Os11t0573800-00
Chr11	irgsp1_rep	three_prime_UTR	21544075	21544862	.	-	.	Parent=Os11t0573800-00
Chr11	irgsp1_rep	mRNA	21549243	21550702	.	+	.	ID=Os11t0573900-01;Name=Os11t0573900-01;Locus_id=Os11g0573900;Note=Hypothetical protein.;Transcript_evidence=AK064591 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-112-G05;Expression=AK064591;TENOR=Os11t0573900-01;KEGG=Os11t0573900-01
Chr11	irgsp1_rep	five_prime_UTR	21549243	21549327	.	+	.	Parent=Os11t0573900-01
Chr11	irgsp1_rep	CDS	21549328	21549576	.	+	0	Parent=Os11t0573900-01
Chr11	irgsp1_rep	three_prime_UTR	21549577	21550702	.	+	.	Parent=Os11t0573900-01
Chr11	irgsp1_rep	mRNA	21566303	21567613	.	-	.	ID=Os11t0574200-00;Name=Os11t0574200-00;Locus_id=Os11g0574200;Note=Domain of unknown function DUF3444 domain containing protein.;Transcript_evidence=EU949499 (DDBJ);ORF_evidence=NP_001068141.2 (RefSeq);InterPro=Domain of unknown function DUF3444 (IPR024593);TENOR=Os11t0574200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	21566630	21567613	.	-	0	Parent=Os11t0574200-00
Chr11	irgsp1_rep	three_prime_UTR	21566303	21566629	.	-	.	Parent=Os11t0574200-00
Chr11	irgsp1_rep	mRNA	21568672	21569308	.	-	.	ID=Os11t0574233-00;Name=Os11t0574233-00;Locus_id=Os11g0574233;Note=Domain of unknown function DUF3444 domain containing protein.;Transcript_evidence=EU951497 (DDBJ);ORF_evidence=NP_001068141.2 (RefSeq);InterPro=Domain of unknown function DUF3444 (IPR024593);TENOR=Os11t0574233-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	21568919	21569308	.	-	0	Parent=Os11t0574233-00
Chr11	irgsp1_rep	three_prime_UTR	21568672	21568918	.	-	.	Parent=Os11t0574233-00
Chr11	irgsp1_rep	mRNA	21588171	21589170	.	-	.	ID=Os11t0574333-01;Name=Os11t0574333-01;Locus_id=Os11g0574333;Note=Non-protein coding transcript.;Transcript_evidence=AK240905 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065035P06;TENOR=Os11t0574333-01
Chr11	irgsp1_rep	exon	21589129	21589170	.	-	.	Parent=Os11t0574333-01
Chr11	irgsp1_rep	exon	21588171	21588531	.	-	.	Parent=Os11t0574333-01
Chr11	irgsp1_rep	mRNA	21602546	21602980	.	+	.	ID=Os11t0574400-00;Name=Os11t0574400-00;Locus_id=Os11g0574400;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=A3C1W2 (UniProt);TENOR=Os11t0574400-00;KEGG=Os11t0574400-00
Chr11	irgsp1_rep	CDS	21602546	21602980	.	+	0	Parent=Os11t0574400-00
Chr11	irgsp1_rep	mRNA	21608163	21609062	.	-	.	ID=Os11t0574500-00;Name=Os11t0574500-00;Locus_id=Os11g0574500;Oryzabase Gene Symbol Synonym(s)=OsFbox612%2C Os_F0268;Oryzabase Gene Name Synonym(s)=F-box protein 612;Note=Similar to F-box domain containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R289 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174);Oryzabase=17373;TENOR=Os11t0574500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	21608163	21609062	.	-	0	Parent=Os11t0574500-00
Chr11	irgsp1_rep	mRNA	21609252	21609671	.	-	.	ID=Os11t0574725-00;Name=Os11t0574725-00;Locus_id=Os11g0574725;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R289 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);TENOR=Os11t0574725-00
Chr11	irgsp1_rep	CDS	21609252	21609671	.	-	0	Parent=Os11t0574725-00
Chr11	irgsp1_rep	mRNA	21654096	21657770	.	+	.	ID=Os11t0575200-00;Name=Os11t0575200-00;Locus_id=Os11g0575200;Note=Zinc finger%2C CCHC-type domain containing protein.;Transcript_evidence=AK364284 (DDBJ);ORF_evidence=NP_001142114.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Zinc finger%2C CCHC retroviral-type (IPR013084);TENOR=Os11t0575200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	21654096	21654238	.	+	0	Parent=Os11t0575200-00
Chr11	irgsp1_rep	CDS	21654572	21654720	.	+	1	Parent=Os11t0575200-00
Chr11	irgsp1_rep	CDS	21655333	21655490	.	+	2	Parent=Os11t0575200-00
Chr11	irgsp1_rep	CDS	21656299	21656325	.	+	0	Parent=Os11t0575200-00
Chr11	irgsp1_rep	three_prime_UTR	21656326	21656415	.	+	.	Parent=Os11t0575200-00
Chr11	irgsp1_rep	three_prime_UTR	21656503	21656614	.	+	.	Parent=Os11t0575200-00
Chr11	irgsp1_rep	three_prime_UTR	21656943	21657266	.	+	.	Parent=Os11t0575200-00
Chr11	irgsp1_rep	three_prime_UTR	21657466	21657770	.	+	.	Parent=Os11t0575200-00
Chr11	irgsp1_rep	mRNA	21672085	21673113	.	+	.	ID=Os11t0575500-00;Name=Os11t0575500-00;Locus_id=Os11g0575500;Note=Similar to Glycosyltransferase.;Transcript_evidence=EU962891 (DDBJ);ORF_evidence=Q5QPZ5 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyltransferase AER61%2C uncharacterised (IPR007657);TENOR=Os11t0575500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	21672085	21672972	.	+	0	Parent=Os11t0575500-00
Chr11	irgsp1_rep	three_prime_UTR	21672973	21673113	.	+	.	Parent=Os11t0575500-00
Chr11	irgsp1_rep	mRNA	21675029	21684772	.	+	.	ID=Os11t0575600-01;Name=Os11t0575600-01;Locus_id=Os11g0575600;CGSNL Gene Symbol=LOX10;CGSNL Gene Name=LIPOXYGENASE 10;Oryzabase Gene Symbol Synonym(s)=OsLOX10%2C OsLOX3%2C LOX3;Oryzabase Gene Name Synonym(s)=lipoxygenase 10%2C lipoxygenase 3;Note=Similar to Lipoxygenase (Fragment).;Transcript_evidence=AK073570 (DDBJ%2C Best hit);ORF_evidence=A7XPL9 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: protein binding (GO:0005515),Molecular Function: lipoxygenase activity (GO:0016165),Molecular Function: oxidoreductase activity%2C acting on single donors with incorporation of molecular oxygen%2C incorporation of two atoms of oxygen (GO:0016702),Molecular Function: metal ion binding (GO:0046872);InterPro=Lipoxygenase (IPR000907),Lipoxygenase%2C LH2 (IPR001024),Lipoxygenase%2C plant (IPR001246),Lipase/lipooxygenase%2C PLAT/LH2 (IPR008976),Lipoxygenase%2C C-terminal (IPR013819),Lipoxygenase%2C iron binding site (IPR020833),Lipoxygenase%2C conserved site (IPR020834);NIAS_FLcDNA=J033046P13;Oryzabase=10393;Expression=AK073570;TENOR=Os11t0575600-01;KEGG=Os11t0575600-01 (EC:1.13.11.12)
Chr11	irgsp1_rep	five_prime_UTR	21675029	21675113	.	+	.	Parent=Os11t0575600-01
Chr11	irgsp1_rep	CDS	21675114	21675279	.	+	0	Parent=Os11t0575600-01
Chr11	irgsp1_rep	CDS	21681152	21681444	.	+	2	Parent=Os11t0575600-01
Chr11	irgsp1_rep	CDS	21682308	21684455	.	+	0	Parent=Os11t0575600-01
Chr11	irgsp1_rep	three_prime_UTR	21684456	21684772	.	+	.	Parent=Os11t0575600-01
Chr11	irgsp1_rep	mRNA	21688497	21690938	.	+	.	ID=Os11t0575900-01;Name=Os11t0575900-01;Locus_id=Os11g0575900;Oryzabase Gene Symbol Synonym(s)=OsSTA263;Note=Conserved hypothetical protein.;Transcript_evidence=AK243391 (DDBJ%2C Best hit);ORF_evidence=B9GBB9 (UniProt);NIAS_FLcDNA=J100064A02;Oryzabase=19527;TENOR=Os11t0575900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	21688497	21688498	.	+	.	Parent=Os11t0575900-01
Chr11	irgsp1_rep	CDS	21688499	21688714	.	+	0	Parent=Os11t0575900-01
Chr11	irgsp1_rep	CDS	21690311	21690357	.	+	0	Parent=Os11t0575900-01
Chr11	irgsp1_rep	CDS	21690448	21690544	.	+	1	Parent=Os11t0575900-01
Chr11	irgsp1_rep	three_prime_UTR	21690545	21690938	.	+	.	Parent=Os11t0575900-01
Chr11	irgsp1_rep	mRNA	21705480	21708029	.	+	.	ID=Os11t0576100-00;Name=Os11t0576100-00;Locus_id=Os11g0576100;Note=Toll/interleukin-1 receptor homology (TIR) domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R274 (UniProt);GO=Biological Process: signal transduction (GO:0007165),Cellular Component: intracellular (GO:0005622),Molecular Function: protein binding (GO:0005515);InterPro=Toll/interleukin-1 receptor homology (TIR) domain (IPR000157);TENOR=Os11t0576100-00
Chr11	irgsp1_rep	CDS	21705480	21708029	.	+	0	Parent=Os11t0576100-00
Chr11	irgsp1_rep	mRNA	21722905	21727433	.	+	.	ID=Os11t0576400-00;Name=Os11t0576400-00;Locus_id=Os11g0576400;Oryzabase Gene Symbol Synonym(s)=Os_F0247;Note=Similar to HAT family dimerisation domain containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R271 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174);Oryzabase=17464;TENOR=Os11t0576400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	21722905	21724059	.	+	0	Parent=Os11t0576400-00
Chr11	irgsp1_rep	CDS	21727122	21727433	.	+	0	Parent=Os11t0576400-00
Chr11	irgsp1_rep	mRNA	21730871	21732981	.	-	.	ID=Os11t0576900-01;Name=Os11t0576900-01;Locus_id=Os11g0576900;Note=Similar to HAT family dimerisation domain containing protein%2C expressed.;Transcript_evidence=AK072935 (DDBJ%2C Best hit);ORF_evidence=Q2R271 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810);NIAS_FLcDNA=J023148D10;TENOR=Os11t0576900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	21732906	21732981	.	-	.	Parent=Os11t0576900-01
Chr11	irgsp1_rep	five_prime_UTR	21732762	21732782	.	-	.	Parent=Os11t0576900-01
Chr11	irgsp1_rep	CDS	21732189	21732761	.	-	0	Parent=Os11t0576900-01
Chr11	irgsp1_rep	three_prime_UTR	21730871	21732188	.	-	.	Parent=Os11t0576900-01
Chr11	irgsp1_rep	mRNA	21734116	21734684	.	+	.	ID=Os11t0576975-00;Name=Os11t0576975-00;Locus_id=Os11g0576975;Note=Hypothetical conserved gene.;Transcript_evidence=CU861710 (DDBJ%2C Best hit);ORF_evidence=A2YKP2 (UniProt);TENOR=Os11t0576975-00;KEGG=Os11t0576975-00
Chr11	irgsp1_rep	CDS	21734116	21734571	.	+	0	Parent=Os11t0576975-00
Chr11	irgsp1_rep	three_prime_UTR	21734572	21734684	.	+	.	Parent=Os11t0576975-00
Chr11	irgsp1_rep	mRNA	21760344	21762936	.	-	.	ID=Os11t0577300-00;Name=Os11t0577300-00;Locus_id=Os11g0577300;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3CCK8 (UniProt);TENOR=Os11t0577300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	21762777	21762936	.	-	0	Parent=Os11t0577300-00
Chr11	irgsp1_rep	CDS	21762322	21762443	.	-	2	Parent=Os11t0577300-00
Chr11	irgsp1_rep	CDS	21761904	21762053	.	-	0	Parent=Os11t0577300-00
Chr11	irgsp1_rep	CDS	21760344	21760382	.	-	0	Parent=Os11t0577300-00
Chr11	irgsp1_rep	mRNA	21763024	21763278	.	-	.	ID=Os11t0577350-00;Name=Os11t0577350-00;Locus_id=Os11g0577350;Note=Similar to SMC5 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q8GU53 (UniProt);TENOR=Os11t0577350-00
Chr11	irgsp1_rep	CDS	21763024	21763278	.	-	0	Parent=Os11t0577350-00
Chr11	irgsp1_rep	mRNA	21778799	21780621	.	+	.	ID=Os11t0577650-00;Name=Os11t0577650-00;Locus_id=Os11g0577650;Note=Hypothetical conserved gene.;Transcript_evidence=BT018588 (DDBJ);ORF_evidence=A2ZTW0 (UniProt);TENOR=Os11t0577650-00;KEGG=Os11t0577650-00
Chr11	irgsp1_rep	CDS	21778799	21779314	.	+	0	Parent=Os11t0577650-00
Chr11	irgsp1_rep	CDS	21779418	21779647	.	+	0	Parent=Os11t0577650-00
Chr11	irgsp1_rep	CDS	21779730	21779829	.	+	1	Parent=Os11t0577650-00
Chr11	irgsp1_rep	three_prime_UTR	21779830	21780206	.	+	.	Parent=Os11t0577650-00
Chr11	irgsp1_rep	three_prime_UTR	21780314	21780621	.	+	.	Parent=Os11t0577650-00
Chr11	irgsp1_rep	mRNA	21779546	21780621	.	-	.	ID=Os11t0577675-00;Name=Os11t0577675-00;Locus_id=Os11g0577675;Note=Hypothetical protein.;Transcript_evidence=BT019283 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0577675-00
Chr11	irgsp1_rep	five_prime_UTR	21780537	21780621	.	-	.	Parent=Os11t0577675-00
Chr11	irgsp1_rep	CDS	21780278	21780536	.	-	0	Parent=Os11t0577675-00
Chr11	irgsp1_rep	CDS	21780116	21780183	.	-	2	Parent=Os11t0577675-00
Chr11	irgsp1_rep	three_prime_UTR	21780084	21780115	.	-	.	Parent=Os11t0577675-00
Chr11	irgsp1_rep	three_prime_UTR	21779727	21779987	.	-	.	Parent=Os11t0577675-00
Chr11	irgsp1_rep	three_prime_UTR	21779546	21779640	.	-	.	Parent=Os11t0577675-00
Chr11	irgsp1_rep	mRNA	21783275	21789027	.	+	.	ID=Os11t0577700-01;Name=Os11t0577700-01;Locus_id=Os11g0577700;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK242830 (DDBJ%2C Best hit);ORF_evidence=B8BL72 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J090067K11;TENOR=Os11t0577700-01;KEGG=Os11t0577700-01
Chr11	irgsp1_rep	five_prime_UTR	21783275	21783921	.	+	.	Parent=Os11t0577700-01
Chr11	irgsp1_rep	CDS	21783922	21784506	.	+	0	Parent=Os11t0577700-01
Chr11	irgsp1_rep	three_prime_UTR	21784507	21785176	.	+	.	Parent=Os11t0577700-01
Chr11	irgsp1_rep	three_prime_UTR	21785274	21787229	.	+	.	Parent=Os11t0577700-01
Chr11	irgsp1_rep	three_prime_UTR	21788099	21788211	.	+	.	Parent=Os11t0577700-01
Chr11	irgsp1_rep	three_prime_UTR	21788307	21788420	.	+	.	Parent=Os11t0577700-01
Chr11	irgsp1_rep	three_prime_UTR	21788505	21788657	.	+	.	Parent=Os11t0577700-01
Chr11	irgsp1_rep	three_prime_UTR	21788739	21789027	.	+	.	Parent=Os11t0577700-01
Chr11	irgsp1_rep	mRNA	21789932	21791579	.	+	.	ID=Os11t0577800-00;Name=Os11t0577800-00;Locus_id=Os11g0577800;Note=Similar to Glucan endo-1%2C3-beta-glucosidase 5.;Transcript_evidence=BT039698 (DDBJ);ORF_evidence=B6TX61 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);TENOR=Os11t0577800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	21789932	21790536	.	+	0	Parent=Os11t0577800-00
Chr11	irgsp1_rep	CDS	21790646	21791579	.	+	1	Parent=Os11t0577800-00
Chr11	irgsp1_rep	mRNA	21789933	21791582	.	-	.	ID=Os11t0577866-00;Name=Os11t0577866-00;Locus_id=Os11g0577866;Note=Conserved hypothetical protein.;Transcript_evidence=BT019195 (DDBJ);ORF_evidence=C0P5S7 (UniProt);TENOR=Os11t0577866-00
Chr11	irgsp1_rep	CDS	21789933	21791582	.	-	0	Parent=Os11t0577866-00
Chr11	irgsp1_rep	mRNA	21799212	21800283	.	+	.	ID=Os11t0578000-00;Name=Os11t0578000-00;Locus_id=Os11g0578000;Note=Similar to TCP-1/cpn60 chaperonin.;Transcript_evidence=EU947707 (DDBJ);ORF_evidence=C6F1N7 (UniProt);TENOR=Os11t0578000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	21799212	21799496	.	+	0	Parent=Os11t0578000-00
Chr11	irgsp1_rep	CDS	21800093	21800134	.	+	0	Parent=Os11t0578000-00
Chr11	irgsp1_rep	three_prime_UTR	21800135	21800283	.	+	.	Parent=Os11t0578000-00
Chr11	irgsp1_rep	mRNA	21801943	21804760	.	+	.	ID=Os11t0578033-01;Name=Os11t0578033-01;Locus_id=Os11g0578033;Note=Conserved hypothetical protein.;Transcript_evidence=AK289143 (DDBJ%2C Best hit);ORF_evidence=Q6ZB86 (UniProt);NIAS_FLcDNA=J090099I02;TENOR=Os11t0578033-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	21801943	21803525	.	+	.	Parent=Os11t0578033-01
Chr11	irgsp1_rep	CDS	21803526	21803873	.	+	0	Parent=Os11t0578033-01
Chr11	irgsp1_rep	three_prime_UTR	21803874	21804760	.	+	.	Parent=Os11t0578033-01
Chr11	irgsp1_rep	mRNA	21804767	21808381	.	-	.	ID=Os11t0578066-01;Name=Os11t0578066-01;Locus_id=Os11g0578066;Note=Hypothetical gene.;Transcript_evidence=AK288990 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090087F08;TENOR=Os11t0578066-01;KEGG=Os11t0578066-01
Chr11	irgsp1_rep	CDS	21808136	21808381	.	-	0	Parent=Os11t0578066-01
Chr11	irgsp1_rep	three_prime_UTR	21804767	21808135	.	-	.	Parent=Os11t0578066-01
Chr11	irgsp1_rep	mRNA	21806096	21809288	.	+	.	ID=Os11t0578100-00;Name=Os11t0578100-00;Locus_id=Os11g0578100;Oryzabase Gene Symbol Synonym(s)=OsDjC76;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C76;Note=Heat shock protein DnaJ%2C N-terminal domain containing protein.;Transcript_evidence=AK363628 (DDBJ);ORF_evidence=NP_001068141.2 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Heat shock protein DnaJ%2C conserved site (IPR018253),Domain of unknown function DUF3444 (IPR024593);Oryzabase=12233;TENOR=Os11t0578100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	21806096	21809257	.	+	0	Parent=Os11t0578100-00
Chr11	irgsp1_rep	three_prime_UTR	21809258	21809288	.	+	.	Parent=Os11t0578100-00
Chr11	irgsp1_rep	mRNA	21817647	21818201	.	+	.	ID=Os11t0578225-00;Name=Os11t0578225-00;Locus_id=Os11g0578225;Note=Similar to Zinc finger%2C C3HC4 type family protein.;Transcript_evidence=EU951497 (DDBJ);ORF_evidence=Q2R253 (UniProt);InterPro=Domain of unknown function DUF3444 (IPR024593);TENOR=Os11t0578225-00
Chr11	irgsp1_rep	CDS	21817647	21818063	.	+	0	Parent=Os11t0578225-00
Chr11	irgsp1_rep	three_prime_UTR	21818064	21818201	.	+	.	Parent=Os11t0578225-00
Chr11	irgsp1_rep	mRNA	21820326	21821162	.	+	.	ID=Os11t0578250-00;Name=Os11t0578250-00;Locus_id=Os11g0578250;Note=Domain of unknown function DUF3444 domain containing protein.;Transcript_evidence=EU951497 (DDBJ);ORF_evidence=NP_001068141.2 (RefSeq);InterPro=Domain of unknown function DUF3444 (IPR024593);TENOR=Os11t0578250-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	21820326	21820376	.	+	.	Parent=Os11t0578250-00
Chr11	irgsp1_rep	CDS	21820377	21821162	.	+	0	Parent=Os11t0578250-00
Chr11	irgsp1_rep	mRNA	21824021	21824561	.	+	.	ID=Os11t0578375-00;Name=Os11t0578375-00;Locus_id=Os11g0578375;Note=Non-protein coding transcript.;Transcript_evidence=EU951497 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0578375-00
Chr11	irgsp1_rep	exon	21824021	21824561	.	+	.	Parent=Os11t0578375-00
Chr11	irgsp1_rep	mRNA	21839186	21843540	.	+	.	ID=Os11t0578500-01;Name=Os11t0578500-01;Locus_id=Os11g0578500;Oryzabase Gene Symbol Synonym(s)=OsDjC77;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C77;Note=Heat shock protein DnaJ family protein.;Transcript_evidence=AK121330 (DDBJ%2C Best hit);ORF_evidence=A3CCL4 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=J023118F05;Oryzabase=12234;Expression=AK121330;TENOR=Os11t0578500-01;KEGG=Os11t0578500-01
Chr11	irgsp1_rep	five_prime_UTR	21839186	21839316	.	+	.	Parent=Os11t0578500-01
Chr11	irgsp1_rep	five_prime_UTR	21839916	21839988	.	+	.	Parent=Os11t0578500-01
Chr11	irgsp1_rep	CDS	21839989	21841863	.	+	0	Parent=Os11t0578500-01
Chr11	irgsp1_rep	three_prime_UTR	21841864	21843540	.	+	.	Parent=Os11t0578500-01
Chr11	irgsp1_rep	mRNA	21850235	21852086	.	+	.	ID=Os11t0578700-01;Name=Os11t0578700-01;Locus_id=Os11g0578700;Note=Similar to F-box domain containing protein%2C expressed.;Transcript_evidence=AK102056 (DDBJ%2C Best hit);ORF_evidence=Q2R244 (UniProt);NIAS_FLcDNA=J033082D02;Expression=AK102056;TENOR=Os11t0578700-01;KEGG=Os11t0578700-01
Chr11	irgsp1_rep	five_prime_UTR	21850235	21851090	.	+	.	Parent=Os11t0578700-01
Chr11	irgsp1_rep	CDS	21851091	21851954	.	+	0	Parent=Os11t0578700-01
Chr11	irgsp1_rep	three_prime_UTR	21851955	21852086	.	+	.	Parent=Os11t0578700-01
Chr11	irgsp1_rep	mRNA	21859265	21862242	.	+	.	ID=Os11t0579000-01;Name=Os11t0579000-01;Locus_id=Os11g0579000;Note=Non-protein coding transcript.;Transcript_evidence=AK110896 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-173-A06;TENOR=Os11t0579000-01
Chr11	irgsp1_rep	exon	21859265	21859475	.	+	.	Parent=Os11t0579000-01
Chr11	irgsp1_rep	exon	21860766	21862242	.	+	.	Parent=Os11t0579000-01
Chr11	irgsp1_rep	mRNA	21860467	21863246	.	-	.	ID=Os11t0579100-01;Name=Os11t0579100-01;Locus_id=Os11g0579100;Note=NB-ARC domain containing protein.;Transcript_evidence=AK100243 (DDBJ%2C Best hit);ORF_evidence=Q2R246 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);NIAS_FLcDNA=J023056B15;Expression=AK100243;TENOR=Os11t0579100-01;KEGG=Os11t0579100-01
Chr11	irgsp1_rep	CDS	21860688	21863246	.	-	0	Parent=Os11t0579100-01
Chr11	irgsp1_rep	three_prime_UTR	21860467	21860687	.	-	.	Parent=Os11t0579100-01
Chr11	irgsp1_rep	mRNA	21872063	21873054	.	+	.	ID=Os11t0579200-01;Name=Os11t0579200-01;Locus_id=Os11g0579200;Note=Similar to Leucine Rich Repeat family protein%2C expressed.;Transcript_evidence=AK108054 (DDBJ%2C Best hit);ORF_evidence=Q2R245 (UniProt);NIAS_FLcDNA=002-137-H08;Expression=AK108054;TENOR=Os11t0579200-01;KEGG=Os11t0579200-01
Chr11	irgsp1_rep	five_prime_UTR	21872063	21872079	.	+	.	Parent=Os11t0579200-01
Chr11	irgsp1_rep	CDS	21872080	21873054	.	+	0	Parent=Os11t0579200-01
Chr11	irgsp1_rep	mRNA	21874419	21877715	.	-	.	ID=Os11t0579300-01;Name=Os11t0579300-01;Locus_id=Os11g0579300;Note=Hypothetical protein.;Transcript_evidence=AK073869 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033073L03;Expression=AK073869;TENOR=Os11t0579300-01;KEGG=Os11t0579300-01
Chr11	irgsp1_rep	five_prime_UTR	21877418	21877715	.	-	.	Parent=Os11t0579300-01
Chr11	irgsp1_rep	five_prime_UTR	21875856	21876238	.	-	.	Parent=Os11t0579300-01
Chr11	irgsp1_rep	CDS	21875388	21875855	.	-	0	Parent=Os11t0579300-01
Chr11	irgsp1_rep	three_prime_UTR	21874419	21875387	.	-	.	Parent=Os11t0579300-01
Chr11	irgsp1_rep	mRNA	21874468	21876475	.	+	.	ID=Os11t0579400-01;Name=Os11t0579400-01;Locus_id=Os11g0579400;Note=Similar to Leucine Rich Repeat family protein%2C expressed.;Transcript_evidence=AK064468 (DDBJ%2C Best hit);ORF_evidence=Q2R245 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);NIAS_FLcDNA=002-110-G12;TENOR=Os11t0579400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	21874468	21876342	.	+	0	Parent=Os11t0579400-01
Chr11	irgsp1_rep	three_prime_UTR	21876343	21876475	.	+	.	Parent=Os11t0579400-01
Chr11	irgsp1_rep	mRNA	21875075	21877085	.	+	.	ID=Os11t0579400-02;Name=Os11t0579400-02;Locus_id=Os11g0579400;Note=Similar to Leucine Rich Repeat family protein%2C expressed.;Transcript_evidence=AK064585 (DDBJ%2C Best hit);ORF_evidence=Q2R245 (UniProt);NIAS_FLcDNA=002-112-F08;TENOR=Os11t0579400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	21875075	21875076	.	+	.	Parent=Os11t0579400-02
Chr11	irgsp1_rep	CDS	21875077	21876342	.	+	0	Parent=Os11t0579400-02
Chr11	irgsp1_rep	three_prime_UTR	21876343	21877085	.	+	.	Parent=Os11t0579400-02
Chr11	irgsp1_rep	mRNA	21881646	21882938	.	+	.	ID=Os11t0579600-01;Name=Os11t0579600-01;Locus_id=Os11g0579600;Oryzabase Gene Symbol Synonym(s)=OsFbox613%2C Os_F0243;Oryzabase Gene Name Synonym(s)=F-box protein 613;Note=Protein of unknown function DUF295 family protein.;Transcript_evidence=AK106009 (DDBJ%2C Best hit);ORF_evidence=Q2R244 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174);NIAS_FLcDNA=001-206-A10;Oryzabase=17374;Expression=AK106009;TENOR=Os11t0579600-01;KEGG=Os11t0579600-01
Chr11	irgsp1_rep	CDS	21881646	21882860	.	+	0	Parent=Os11t0579600-01
Chr11	irgsp1_rep	three_prime_UTR	21882861	21882938	.	+	.	Parent=Os11t0579600-01
Chr11	irgsp1_rep	mRNA	21883428	21888730	.	-	.	ID=Os11t0579700-01;Name=Os11t0579700-01;Locus_id=Os11g0579700;Note=Conserved hypothetical protein.;Transcript_evidence=AK107579 (DDBJ%2C Best hit);ORF_evidence=Q2R243 (UniProt);NIAS_FLcDNA=002-130-E01;TENOR=Os11t0579700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	21888685	21888730	.	-	.	Parent=Os11t0579700-01
Chr11	irgsp1_rep	CDS	21887858	21888684	.	-	0	Parent=Os11t0579700-01
Chr11	irgsp1_rep	CDS	21883814	21883892	.	-	1	Parent=Os11t0579700-01
Chr11	irgsp1_rep	three_prime_UTR	21883428	21883813	.	-	.	Parent=Os11t0579700-01
Chr11	irgsp1_rep	mRNA	21890420	21892390	.	+	.	ID=Os11t0579800-01;Name=Os11t0579800-01;Locus_id=Os11g0579800;Note=Gar1 protein RNA-binding region family protein.;Transcript_evidence=AK121986 (DDBJ%2C Best hit);ORF_evidence=B6TYV7 (UniProt);GO=Biological Process: snRNA pseudouridine synthesis (GO:0031120),Biological Process: ribosome biogenesis (GO:0042254),Cellular Component: box H/ACA snoRNP complex (GO:0031429),Molecular Function: pseudouridine synthase activity (GO:0009982),Molecular Function: snoRNA binding (GO:0030515);InterPro=H/ACA ribonucleoprotein complex%2C subunit Gar1/Naf1 (IPR007504),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),H/ACA ribonucleoprotein complex%2C subunit Gar1%2C eukaryote (IPR021154);NIAS_FLcDNA=J033108P09;Expression=AK121986;TENOR=Os11t0579800-01;KEGG=Os11t0579800-01
Chr11	irgsp1_rep	five_prime_UTR	21890420	21890499	.	+	.	Parent=Os11t0579800-01
Chr11	irgsp1_rep	CDS	21890500	21890662	.	+	0	Parent=Os11t0579800-01
Chr11	irgsp1_rep	CDS	21890770	21890918	.	+	2	Parent=Os11t0579800-01
Chr11	irgsp1_rep	CDS	21891404	21891519	.	+	0	Parent=Os11t0579800-01
Chr11	irgsp1_rep	CDS	21891974	21892136	.	+	1	Parent=Os11t0579800-01
Chr11	irgsp1_rep	three_prime_UTR	21892137	21892390	.	+	.	Parent=Os11t0579800-01
Chr11	irgsp1_rep	mRNA	21892875	21897222	.	-	.	ID=Os11t0579900-01;Name=Os11t0579900-01;Locus_id=Os11g0579900;Oryzabase Gene Name Synonym(s)=Armadillo-like helical domain-containing protein;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK102366 (DDBJ%2C Best hit);ORF_evidence=B8BL76 (UniProt);GO=Molecular Function: RNA binding (GO:0003723),Molecular Function: binding (GO:0005488);InterPro=Pumilio RNA-binding repeat (IPR001313),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033091K07;Oryzabase=22036;Expression=AK102366;TENOR=Os11t0579900-01;KEGG=Os11t0579900-01
Chr11	irgsp1_rep	five_prime_UTR	21897067	21897222	.	-	.	Parent=Os11t0579900-01
Chr11	irgsp1_rep	five_prime_UTR	21896173	21896242	.	-	.	Parent=Os11t0579900-01
Chr11	irgsp1_rep	CDS	21894650	21896172	.	-	0	Parent=Os11t0579900-01
Chr11	irgsp1_rep	CDS	21894406	21894568	.	-	1	Parent=Os11t0579900-01
Chr11	irgsp1_rep	CDS	21893876	21894039	.	-	0	Parent=Os11t0579900-01
Chr11	irgsp1_rep	CDS	21893515	21893773	.	-	1	Parent=Os11t0579900-01
Chr11	irgsp1_rep	CDS	21893252	21893383	.	-	0	Parent=Os11t0579900-01
Chr11	irgsp1_rep	three_prime_UTR	21892875	21893251	.	-	.	Parent=Os11t0579900-01
Chr11	irgsp1_rep	mRNA	21906342	21908484	.	+	.	ID=Os11t0580000-01;Name=Os11t0580000-01;Locus_id=Os11g0580000;CGSNL Gene Symbol=SINE1;CGSNL Gene Name=SUN DOMAIN-BINDING AND NE LOCALIZATION PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsSINE1;Oryzabase Gene Name Synonym(s)=SUN domain-binding and NE localization protein1%2C SUN domain-binding and NE localization protein 1;Note=Similar to predicted protein.;Transcript_evidence=AK121905 (DDBJ%2C Best hit),AK119421 (DDBJ%2C Best hit);ORF_evidence=NP_683432.1 (RefSeq);GO=Biological Process: spliceosome assembly (GO:0000245),Biological Process: nuclear mRNA splicing%2C via spliceosome (GO:0000398),Molecular Function: binding (GO:0005488);InterPro=Survival motor neuron interacting protein 1 (IPR007022),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033105I06,001-132-G12;Oryzabase=23723;TENOR=Os11t0580000-01
Chr11	irgsp1_rep	five_prime_UTR	21906342	21906515	.	+	.	Parent=Os11t0580000-01
Chr11	irgsp1_rep	five_prime_UTR	21906902	21906964	.	+	.	Parent=Os11t0580000-01
Chr11	irgsp1_rep	CDS	21906965	21908311	.	+	0	Parent=Os11t0580000-01
Chr11	irgsp1_rep	CDS	21908431	21908484	.	+	0	Parent=Os11t0580000-01
Chr11	irgsp1_rep	mRNA	21912912	21915983	.	-	.	ID=Os11t0580500-00;Name=Os11t0580500-00;Locus_id=Os11g0580500;Note=NOP5%2C N-terminal domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8BL78 (UniProt);InterPro=NOP5%2C N-terminal (IPR012974);TENOR=Os11t0580500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	21915869	21915983	.	-	0	Parent=Os11t0580500-00
Chr11	irgsp1_rep	CDS	21915280	21915395	.	-	2	Parent=Os11t0580500-00
Chr11	irgsp1_rep	CDS	21914353	21914520	.	-	0	Parent=Os11t0580500-00
Chr11	irgsp1_rep	CDS	21914103	21914279	.	-	0	Parent=Os11t0580500-00
Chr11	irgsp1_rep	CDS	21913472	21913669	.	-	0	Parent=Os11t0580500-00
Chr11	irgsp1_rep	CDS	21912912	21913121	.	-	0	Parent=Os11t0580500-00
Chr11	irgsp1_rep	mRNA	21920308	21923341	.	-	.	ID=Os11t0580800-01;Name=Os11t0580800-01;Locus_id=Os11g0580800;Note=Twin-arginine translocation protein TatB family protein.;Transcript_evidence=AK059555 (DDBJ%2C Best hit);ORF_evidence=NP_001105878.1 (RefSeq);GO=Biological Process: protein secretion (GO:0009306),Biological Process: protein transport (GO:0015031),Cellular Component: plasma membrane (GO:0005886),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: protein transporter activity (GO:0008565);InterPro=Bacterial sec-independent translocation protein MttA/Hcf106 (IPR003369),Twin-arginine translocation protein TatB-like (IPR003998),Twin-arginine translocation protein TatA/E (IPR006312);NIAS_FLcDNA=001-029-G07;Expression=AK059555;TENOR=Os11t0580800-01;KEGG=Os11t0580800-01
Chr11	irgsp1_rep	five_prime_UTR	21923105	21923341	.	-	.	Parent=Os11t0580800-01
Chr11	irgsp1_rep	CDS	21922912	21923104	.	-	0	Parent=Os11t0580800-01
Chr11	irgsp1_rep	CDS	21922180	21922301	.	-	2	Parent=Os11t0580800-01
Chr11	irgsp1_rep	CDS	21921761	21921820	.	-	0	Parent=Os11t0580800-01
Chr11	irgsp1_rep	CDS	21921571	21921691	.	-	0	Parent=Os11t0580800-01
Chr11	irgsp1_rep	CDS	21921077	21921205	.	-	2	Parent=Os11t0580800-01
Chr11	irgsp1_rep	CDS	21920544	21920662	.	-	2	Parent=Os11t0580800-01
Chr11	irgsp1_rep	three_prime_UTR	21920308	21920543	.	-	.	Parent=Os11t0580800-01
Chr11	irgsp1_rep	mRNA	21966465	21969644	.	+	.	ID=Os11t0581700-01;Name=Os11t0581700-01;Locus_id=Os11g0581700;Note=Similar to EPIDERMAL PATTERNING FACTOR-like protein 4.;Transcript_evidence=AK242600 (DDBJ%2C Best hit);ORF_evidence=Q2V3I3 (UniProt);NIAS_FLcDNA=J090014D22;TENOR=Os11t0581700-01;KEGG=Os11t0581700-01
Chr11	irgsp1_rep	five_prime_UTR	21966465	21968867	.	+	.	Parent=Os11t0581700-01
Chr11	irgsp1_rep	CDS	21968868	21969203	.	+	0	Parent=Os11t0581700-01
Chr11	irgsp1_rep	three_prime_UTR	21969204	21969644	.	+	.	Parent=Os11t0581700-01
Chr11	irgsp1_rep	mRNA	21982349	21986403	.	+	.	ID=Os11t0581900-01;Name=Os11t0581900-01;Locus_id=Os11g0581900;Note=Uncharacterised protein family UPF0005 domain containing protein.;Transcript_evidence=AK069449 (DDBJ%2C Best hit);ORF_evidence=NP_192178.1 (RefSeq);InterPro=Inhibitor of apoptosis-promoting Bax1-related (IPR006214);NIAS_FLcDNA=J023020E21;Expression=AK069449;TENOR=Os11t0581900-01;KEGG=Os11t0581900-01
Chr11	irgsp1_rep	five_prime_UTR	21982349	21982428	.	+	.	Parent=Os11t0581900-01
Chr11	irgsp1_rep	CDS	21982429	21982738	.	+	0	Parent=Os11t0581900-01
Chr11	irgsp1_rep	CDS	21982846	21982959	.	+	2	Parent=Os11t0581900-01
Chr11	irgsp1_rep	CDS	21985648	21985805	.	+	2	Parent=Os11t0581900-01
Chr11	irgsp1_rep	CDS	21985898	21986092	.	+	0	Parent=Os11t0581900-01
Chr11	irgsp1_rep	three_prime_UTR	21986093	21986403	.	+	.	Parent=Os11t0581900-01
Chr11	irgsp1_rep	mRNA	21986828	21990286	.	-	.	ID=Os11t0582000-00;Name=Os11t0582000-00;Locus_id=Os11g0582000;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G877 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Epidermal growth factor-like%2C type 3 (IPR000742);TENOR=Os11t0582000-00;KEGG=Os11t0582000-00
Chr11	irgsp1_rep	CDS	21990199	21990286	.	-	0	Parent=Os11t0582000-00
Chr11	irgsp1_rep	CDS	21989904	21990065	.	-	2	Parent=Os11t0582000-00
Chr11	irgsp1_rep	CDS	21987683	21987796	.	-	2	Parent=Os11t0582000-00
Chr11	irgsp1_rep	CDS	21987411	21987539	.	-	2	Parent=Os11t0582000-00
Chr11	irgsp1_rep	CDS	21986828	21987021	.	-	2	Parent=Os11t0582000-00
Chr11	irgsp1_rep	mRNA	21991920	21994207	.	-	.	ID=Os11t0582100-01;Name=Os11t0582100-01;Locus_id=Os11g0582100;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK068669 (DDBJ%2C Best hit);ORF_evidence=NP_001151286.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J013159H10;Expression=AK068669;TENOR=Os11t0582100-01;KEGG=Os11t0582100-01
Chr11	irgsp1_rep	five_prime_UTR	21994088	21994207	.	-	.	Parent=Os11t0582100-01
Chr11	irgsp1_rep	CDS	21993831	21994087	.	-	0	Parent=Os11t0582100-01
Chr11	irgsp1_rep	CDS	21992064	21992424	.	-	1	Parent=Os11t0582100-01
Chr11	irgsp1_rep	three_prime_UTR	21991920	21992063	.	-	.	Parent=Os11t0582100-01
Chr11	irgsp1_rep	mRNA	22003368	22010499	.	+	.	ID=Os11t0582300-01;Name=Os11t0582300-01;Locus_id=Os11g0582300;CGSNL Gene Symbol=RHD3;Oryzabase Gene Symbol Synonym(s)=OsRHD3;Note=Similar to root hair defective 3 GTP-binding (RHD3) family protein.;Transcript_evidence=AK065661 (DDBJ%2C Best hit);ORF_evidence=XP_002865275.1 (RefSeq);GO=Molecular Function: hydrolase activity%2C acting on acid anhydrides (GO:0016817);InterPro=Root hair defective 3 GTP-binding (IPR008803);NIAS_FLcDNA=J013039D02;Oryzabase=23610;Expression=AK065661;TENOR=Os11t0582300-01;KEGG=Os11t0582300-01
Chr11	irgsp1_rep	five_prime_UTR	22003368	22003487	.	+	.	Parent=Os11t0582300-01
Chr11	irgsp1_rep	CDS	22003488	22003665	.	+	0	Parent=Os11t0582300-01
Chr11	irgsp1_rep	CDS	22003965	22004031	.	+	2	Parent=Os11t0582300-01
Chr11	irgsp1_rep	CDS	22004177	22004279	.	+	1	Parent=Os11t0582300-01
Chr11	irgsp1_rep	CDS	22004936	22005006	.	+	0	Parent=Os11t0582300-01
Chr11	irgsp1_rep	CDS	22005126	22005189	.	+	1	Parent=Os11t0582300-01
Chr11	irgsp1_rep	CDS	22005274	22005339	.	+	0	Parent=Os11t0582300-01
Chr11	irgsp1_rep	CDS	22005451	22005498	.	+	0	Parent=Os11t0582300-01
Chr11	irgsp1_rep	CDS	22005579	22005641	.	+	0	Parent=Os11t0582300-01
Chr11	irgsp1_rep	CDS	22005715	22005771	.	+	0	Parent=Os11t0582300-01
Chr11	irgsp1_rep	CDS	22005919	22005985	.	+	0	Parent=Os11t0582300-01
Chr11	irgsp1_rep	CDS	22006211	22006236	.	+	2	Parent=Os11t0582300-01
Chr11	irgsp1_rep	three_prime_UTR	22006237	22006279	.	+	.	Parent=Os11t0582300-01
Chr11	irgsp1_rep	three_prime_UTR	22006358	22006449	.	+	.	Parent=Os11t0582300-01
Chr11	irgsp1_rep	three_prime_UTR	22006817	22006895	.	+	.	Parent=Os11t0582300-01
Chr11	irgsp1_rep	three_prime_UTR	22007268	22007433	.	+	.	Parent=Os11t0582300-01
Chr11	irgsp1_rep	three_prime_UTR	22007861	22007985	.	+	.	Parent=Os11t0582300-01
Chr11	irgsp1_rep	three_prime_UTR	22008124	22008386	.	+	.	Parent=Os11t0582300-01
Chr11	irgsp1_rep	three_prime_UTR	22008508	22008604	.	+	.	Parent=Os11t0582300-01
Chr11	irgsp1_rep	three_prime_UTR	22008694	22008855	.	+	.	Parent=Os11t0582300-01
Chr11	irgsp1_rep	three_prime_UTR	22008939	22009043	.	+	.	Parent=Os11t0582300-01
Chr11	irgsp1_rep	three_prime_UTR	22009364	22009458	.	+	.	Parent=Os11t0582300-01
Chr11	irgsp1_rep	three_prime_UTR	22009584	22009680	.	+	.	Parent=Os11t0582300-01
Chr11	irgsp1_rep	three_prime_UTR	22009970	22010499	.	+	.	Parent=Os11t0582300-01
Chr11	irgsp1_rep	mRNA	22003368	22010271	.	+	.	ID=Os11t0582300-02;Name=Os11t0582300-02;Locus_id=Os11g0582300;CGSNL Gene Symbol=RHD3;Oryzabase Gene Symbol Synonym(s)=OsRHD3;Note=Similar to GTP-binding protein-like%3B root hair defective 3 protein-like.;Transcript_evidence=AK100485 (DDBJ%2C Best hit);ORF_evidence=NP_199329.1 (RefSeq);GO=Molecular Function: hydrolase activity%2C acting on acid anhydrides (GO:0016817);InterPro=Root hair defective 3 GTP-binding (IPR008803);NIAS_FLcDNA=J023097D22;Oryzabase=23610;Expression=AK100485;TENOR=Os11t0582300-02;KEGG=Os11t0582300-02
Chr11	irgsp1_rep	five_prime_UTR	22003368	22003487	.	+	.	Parent=Os11t0582300-02
Chr11	irgsp1_rep	CDS	22003488	22003665	.	+	0	Parent=Os11t0582300-02
Chr11	irgsp1_rep	CDS	22003965	22004031	.	+	2	Parent=Os11t0582300-02
Chr11	irgsp1_rep	CDS	22004177	22004279	.	+	1	Parent=Os11t0582300-02
Chr11	irgsp1_rep	CDS	22004936	22005006	.	+	0	Parent=Os11t0582300-02
Chr11	irgsp1_rep	CDS	22005126	22005189	.	+	1	Parent=Os11t0582300-02
Chr11	irgsp1_rep	CDS	22005274	22005339	.	+	0	Parent=Os11t0582300-02
Chr11	irgsp1_rep	CDS	22005451	22005498	.	+	0	Parent=Os11t0582300-02
Chr11	irgsp1_rep	CDS	22005579	22005641	.	+	0	Parent=Os11t0582300-02
Chr11	irgsp1_rep	CDS	22005715	22005771	.	+	0	Parent=Os11t0582300-02
Chr11	irgsp1_rep	CDS	22005919	22006077	.	+	0	Parent=Os11t0582300-02
Chr11	irgsp1_rep	CDS	22006211	22006279	.	+	0	Parent=Os11t0582300-02
Chr11	irgsp1_rep	CDS	22006358	22006449	.	+	0	Parent=Os11t0582300-02
Chr11	irgsp1_rep	CDS	22006817	22006895	.	+	1	Parent=Os11t0582300-02
Chr11	irgsp1_rep	CDS	22007268	22007433	.	+	0	Parent=Os11t0582300-02
Chr11	irgsp1_rep	CDS	22007861	22007985	.	+	2	Parent=Os11t0582300-02
Chr11	irgsp1_rep	CDS	22008124	22008386	.	+	0	Parent=Os11t0582300-02
Chr11	irgsp1_rep	CDS	22008508	22008604	.	+	1	Parent=Os11t0582300-02
Chr11	irgsp1_rep	CDS	22008694	22008855	.	+	0	Parent=Os11t0582300-02
Chr11	irgsp1_rep	CDS	22008939	22009043	.	+	0	Parent=Os11t0582300-02
Chr11	irgsp1_rep	CDS	22009364	22009458	.	+	0	Parent=Os11t0582300-02
Chr11	irgsp1_rep	CDS	22009584	22009680	.	+	1	Parent=Os11t0582300-02
Chr11	irgsp1_rep	CDS	22009970	22010215	.	+	0	Parent=Os11t0582300-02
Chr11	irgsp1_rep	three_prime_UTR	22010216	22010271	.	+	.	Parent=Os11t0582300-02
Chr11	irgsp1_rep	mRNA	22012024	22013643	.	-	.	ID=Os11t0582400-01;Name=Os11t0582400-01;Locus_id=Os11g0582400;Oryzabase Gene Symbol Synonym(s)=OsEnS-146%2C EnS-146%2C OsEnS146%2C EnS146;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 146;Note=Similar to Embryo-specific protein.;Transcript_evidence=AK073083 (DDBJ%2C Best hit),AK108352 (DDBJ%2C Best hit);ORF_evidence=Q7X9Q6 (UniProt);NIAS_FLcDNA=J033021I15,002-142-C01;Oryzabase=18429;Expression=AK073083;TENOR=Os11t0582400-01;KEGG=Os11t0582400-01
Chr11	irgsp1_rep	five_prime_UTR	22013564	22013643	.	-	.	Parent=Os11t0582400-01
Chr11	irgsp1_rep	CDS	22012385	22013563	.	-	0	Parent=Os11t0582400-01
Chr11	irgsp1_rep	three_prime_UTR	22012024	22012384	.	-	.	Parent=Os11t0582400-01
Chr11	irgsp1_rep	mRNA	22016848	22018431	.	+	.	ID=Os11t0582500-01;Name=Os11t0582500-01;Locus_id=Os11g0582500;RAP-DB Gene Symbol Synonym(s)=OSC6%2C Osc6%2C Osg6B%2C OsG6B%2C OsLTPG25%2C OsLTPg25%2C OsLtpVII.1%2C Os C6%2C C6;RAP-DB Gene Name Synonym(s)=ANTHER SPECIFIC PROTEIN 6%2C GPI-anchored non-specific lipid transfer protein 25%2C type G nsLTP 25%2C type G non-specific lipid transfer protein 25;CGSNL Gene Symbol=OSC6;CGSNL Gene Name=ANTHER SPECIFIC PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=Osc6%2C Osg6B%2C OsG6B%2C OsLTPG25%2C OsLTPg25%2C OsLtpVII.1%2C Os C6%2C C6;Oryzabase Gene Name Synonym(s)=GPI-anchored non-specific lipid transfer protein 25%2C type G nsLTP 25%2C type G non-specific lipid transfer protein 25;Note=Protease inhibitor%2C lipid transfer protein (LTP)%2C Postmeiotic anther development;Transcript_evidence=AK064672 (Genbank),D10983 (Genbank);ORF_evidence=Q2R222 (UniProt);InterPro=Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain (IPR016140);NIAS_FLcDNA=002-115-E05;Manual Curation=October 12%2C 2010;Literature_PMID=20610705,1463854;Oryzabase=8403;Expression=AK064672;TENOR=Os11t0582500-01;KEGG=Os11t0582500-01
Chr11	irgsp1_rep	five_prime_UTR	22016848	22016920	.	+	.	Parent=Os11t0582500-01
Chr11	irgsp1_rep	CDS	22016921	22017275	.	+	0	Parent=Os11t0582500-01
Chr11	irgsp1_rep	CDS	22017871	22017914	.	+	2	Parent=Os11t0582500-01
Chr11	irgsp1_rep	three_prime_UTR	22017915	22017915	.	+	.	Parent=Os11t0582500-01
Chr11	irgsp1_rep	three_prime_UTR	22018072	22018431	.	+	.	Parent=Os11t0582500-01
Chr11	irgsp1_rep	mRNA	22025760	22029748	.	+	.	ID=Os11t0582700-01;Name=Os11t0582700-01;Locus_id=Os11g0582700;Oryzabase Gene Symbol Synonym(s)=OsFbox614%2C Os_F0381;Oryzabase Gene Name Synonym(s)=F-box protein 614;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK103872 (DDBJ%2C Best hit);ORF_evidence=Q10BX1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Protein of unknown function DUF295 (IPR005174),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033149K12;Oryzabase=17375;Expression=AK103872;TENOR=Os11t0582700-01;KEGG=Os11t0582700-01
Chr11	irgsp1_rep	five_prime_UTR	22025760	22026238	.	+	.	Parent=Os11t0582700-01
Chr11	irgsp1_rep	CDS	22026239	22027717	.	+	0	Parent=Os11t0582700-01
Chr11	irgsp1_rep	three_prime_UTR	22027718	22028163	.	+	.	Parent=Os11t0582700-01
Chr11	irgsp1_rep	three_prime_UTR	22028265	22028378	.	+	.	Parent=Os11t0582700-01
Chr11	irgsp1_rep	three_prime_UTR	22028918	22029748	.	+	.	Parent=Os11t0582700-01
Chr11	irgsp1_rep	mRNA	22030012	22031935	.	-	.	ID=Os11t0582801-00;Name=Os11t0582801-00;Locus_id=Os11g0582801;Note=Hypothetical gene.;Transcript_evidence=CT835632 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os11t0582801-00;KEGG=Os11t0582801-00
Chr11	irgsp1_rep	five_prime_UTR	22031934	22031935	.	-	.	Parent=Os11t0582801-00
Chr11	irgsp1_rep	CDS	22031674	22031933	.	-	0	Parent=Os11t0582801-00
Chr11	irgsp1_rep	CDS	22030529	22030529	.	-	1	Parent=Os11t0582801-00
Chr11	irgsp1_rep	three_prime_UTR	22030384	22030528	.	-	.	Parent=Os11t0582801-00
Chr11	irgsp1_rep	three_prime_UTR	22030012	22030300	.	-	.	Parent=Os11t0582801-00
Chr11	irgsp1_rep	mRNA	22040372	22044971	.	+	.	ID=Os11t0583200-01;Name=Os11t0583200-01;Locus_id=Os11g0583200;Note=Hypothetical conserved gene.;Transcript_evidence=AK288831 (DDBJ%2C Best hit);ORF_evidence=Q2R217 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J090073O12;TENOR=Os11t0583200-01;KEGG=Os11t0583200-01
Chr11	irgsp1_rep	five_prime_UTR	22040372	22040402	.	+	.	Parent=Os11t0583200-01
Chr11	irgsp1_rep	CDS	22040403	22042021	.	+	0	Parent=Os11t0583200-01
Chr11	irgsp1_rep	CDS	22043057	22043522	.	+	1	Parent=Os11t0583200-01
Chr11	irgsp1_rep	three_prime_UTR	22043523	22043600	.	+	.	Parent=Os11t0583200-01
Chr11	irgsp1_rep	three_prime_UTR	22044148	22044491	.	+	.	Parent=Os11t0583200-01
Chr11	irgsp1_rep	three_prime_UTR	22044592	22044971	.	+	.	Parent=Os11t0583200-01
Chr11	irgsp1_rep	mRNA	22042695	22044861	.	-	.	ID=Os11t0583250-01;Name=Os11t0583250-01;Locus_id=Os11g0583250;Note=Non-protein coding transcript.;Transcript_evidence=AK289035 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090091I16;TENOR=Os11t0583250-01
Chr11	irgsp1_rep	exon	22042695	22044861	.	-	.	Parent=Os11t0583250-01
Chr11	irgsp1_rep	mRNA	22046396	22046842	.	+	.	ID=Os11t0583300-00;Name=Os11t0583300-00;Locus_id=Os11g0583300;Oryzabase Gene Symbol Synonym(s)=OsFbox615%2C Os_F0099;Oryzabase Gene Name Synonym(s)=F-box protein 615;Note=Similar to F-box domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R216 (UniProt);Oryzabase=17376;TENOR=Os11t0583300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	22046396	22046842	.	+	0	Parent=Os11t0583300-00
Chr11	irgsp1_rep	mRNA	22068104	22070310	.	+	.	ID=Os11t0584100-01;Name=Os11t0584100-01;Locus_id=Os11g0584100;Oryzabase Gene Symbol Synonym(s)=OsFbox616%2C Os_F0314;Oryzabase Gene Name Synonym(s)=F-box protein 616;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK106960 (DDBJ%2C Best hit);ORF_evidence=Q2R244 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Protein of unknown function DUF295 (IPR005174),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-119-F02;Oryzabase=17377;Expression=AK106960;TENOR=Os11t0584100-01;KEGG=Os11t0584100-01
Chr11	irgsp1_rep	five_prime_UTR	22068104	22068435	.	+	.	Parent=Os11t0584100-01
Chr11	irgsp1_rep	five_prime_UTR	22068546	22068665	.	+	.	Parent=Os11t0584100-01
Chr11	irgsp1_rep	CDS	22068666	22070156	.	+	0	Parent=Os11t0584100-01
Chr11	irgsp1_rep	three_prime_UTR	22070157	22070310	.	+	.	Parent=Os11t0584100-01
Chr11	irgsp1_rep	mRNA	22068243	22069613	.	+	.	ID=Os11t0584100-02;Name=Os11t0584100-02;Locus_id=Os11g0584100;Oryzabase Gene Symbol Synonym(s)=OsFbox616%2C Os_F0314;Oryzabase Gene Name Synonym(s)=F-box protein 616;Note=Similar to F-box domain containing protein%2C expressed.;Transcript_evidence=AK069971 (DDBJ%2C Best hit);ORF_evidence=Q2R244 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023035C17;Oryzabase=17377;Expression=AK069971;TENOR=Os11t0584100-02;KEGG=Os11t0584100-02
Chr11	irgsp1_rep	five_prime_UTR	22068243	22068435	.	+	.	Parent=Os11t0584100-02
Chr11	irgsp1_rep	five_prime_UTR	22068546	22068665	.	+	.	Parent=Os11t0584100-02
Chr11	irgsp1_rep	CDS	22068666	22069613	.	+	0	Parent=Os11t0584100-02
Chr11	irgsp1_rep	mRNA	22078729	22079226	.	+	.	ID=Os11t0584200-00;Name=Os11t0584200-00;Locus_id=Os11g0584200;Note=Conserved hypothetical protein.;Transcript_evidence=CT835637 (DDBJ%2C Best hit);ORF_evidence=Q5ZC78 (UniProt);TENOR=Os11t0584200-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	22078729	22078730	.	+	.	Parent=Os11t0584200-00
Chr11	irgsp1_rep	CDS	22078731	22078886	.	+	0	Parent=Os11t0584200-00
Chr11	irgsp1_rep	three_prime_UTR	22078887	22079226	.	+	.	Parent=Os11t0584200-00
Chr11	irgsp1_rep	mRNA	22130847	22131940	.	+	.	ID=Os11t0585100-01;Name=Os11t0585100-01;Locus_id=Os11g0585100;Note=Conserved hypothetical protein.;Transcript_evidence=AK107496 (DDBJ%2C Best hit);ORF_evidence=NP_001173017.1 (RefSeq);NIAS_FLcDNA=002-129-D08;TENOR=Os11t0585100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	22130847	22131274	.	+	.	Parent=Os11t0585100-01
Chr11	irgsp1_rep	five_prime_UTR	22131413	22131460	.	+	.	Parent=Os11t0585100-01
Chr11	irgsp1_rep	CDS	22131461	22131462	.	+	0	Parent=Os11t0585100-01
Chr11	irgsp1_rep	CDS	22131586	22131802	.	+	1	Parent=Os11t0585100-01
Chr11	irgsp1_rep	three_prime_UTR	22131803	22131940	.	+	.	Parent=Os11t0585100-01
Chr11	irgsp1_rep	mRNA	22134435	22135199	.	-	.	ID=Os11t0585200-01;Name=Os11t0585200-01;Locus_id=Os11g0585200;Note=Hypothetical protein.;Transcript_evidence=AK109198 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-156-B11;TENOR=Os11t0585200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	22135198	22135199	.	-	.	Parent=Os11t0585200-01
Chr11	irgsp1_rep	CDS	22134625	22135197	.	-	0	Parent=Os11t0585200-01
Chr11	irgsp1_rep	three_prime_UTR	22134435	22134624	.	-	.	Parent=Os11t0585200-01
Chr11	irgsp1_rep	mRNA	22139918	22143513	.	+	.	ID=Os11t0585700-01;Name=Os11t0585700-01;Locus_id=Os11g0585700;Note=Similar to 50S ribosomal protein L4.;Transcript_evidence=AK069751 (DDBJ%2C Best hit);ORF_evidence=B6SPY9 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L4/L1e (IPR002136),Ribosomal protein L4/L1e%2C bacterial-type (IPR013005),Ribosomal protein L4 domain (IPR023574);NIAS_FLcDNA=J023030I10;Expression=AK069751;TENOR=Os11t0585700-01;KEGG=Os11t0585700-01
Chr11	irgsp1_rep	five_prime_UTR	22139918	22140008	.	+	.	Parent=Os11t0585700-01
Chr11	irgsp1_rep	CDS	22140009	22140098	.	+	0	Parent=Os11t0585700-01
Chr11	irgsp1_rep	CDS	22141064	22141181	.	+	0	Parent=Os11t0585700-01
Chr11	irgsp1_rep	CDS	22141497	22141645	.	+	2	Parent=Os11t0585700-01
Chr11	irgsp1_rep	CDS	22141757	22141864	.	+	0	Parent=Os11t0585700-01
Chr11	irgsp1_rep	CDS	22141978	22142097	.	+	0	Parent=Os11t0585700-01
Chr11	irgsp1_rep	CDS	22142873	22143046	.	+	0	Parent=Os11t0585700-01
Chr11	irgsp1_rep	CDS	22143146	22143247	.	+	0	Parent=Os11t0585700-01
Chr11	irgsp1_rep	three_prime_UTR	22143248	22143513	.	+	.	Parent=Os11t0585700-01
Chr11	irgsp1_rep	mRNA	22150902	22155445	.	+	.	ID=Os11t0585900-01;Name=Os11t0585900-01;Locus_id=Os11g0585900;Oryzabase Gene Symbol Synonym(s)=OsETOL3;Oryzabase Gene Name Synonym(s)=ETHYLENE OVERPRODUCER 1-like gene 3;Note=Similar to ETO1-like protein 1 (Ethylene overproducer 1-like protein 1).;Transcript_evidence=AK070793 (DDBJ%2C Best hit);ORF_evidence=Q2R1Z8 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),Tetratricopeptide TPR-1 (IPR001440),BTB/POZ fold (IPR011333),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),BTB/POZ (IPR013069),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J023063K20;Oryzabase=15665;Expression=AK070793;TENOR=Os11t0585900-01;KEGG=Os11t0585900-01
Chr11	irgsp1_rep	five_prime_UTR	22150902	22150903	.	+	.	Parent=Os11t0585900-01
Chr11	irgsp1_rep	CDS	22150904	22150944	.	+	0	Parent=Os11t0585900-01
Chr11	irgsp1_rep	CDS	22151170	22152879	.	+	1	Parent=Os11t0585900-01
Chr11	irgsp1_rep	CDS	22153162	22153453	.	+	1	Parent=Os11t0585900-01
Chr11	irgsp1_rep	CDS	22154245	22154554	.	+	0	Parent=Os11t0585900-01
Chr11	irgsp1_rep	CDS	22154925	22155145	.	+	2	Parent=Os11t0585900-01
Chr11	irgsp1_rep	three_prime_UTR	22155146	22155445	.	+	.	Parent=Os11t0585900-01
Chr11	irgsp1_rep	mRNA	22159570	22164658	.	+	.	ID=Os11t0586001-00;Name=Os11t0586001-00;Locus_id=Os11g0586001;Note=Putative protein phosphatase 2C 76.;Transcript_evidence=A3CCP9 (UniProt);ORF_evidence=A3CCP9 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);TENOR=Os11t0586001-00
Chr11	irgsp1_rep	CDS	22159570	22159943	.	+	0	Parent=Os11t0586001-00
Chr11	irgsp1_rep	CDS	22160557	22160796	.	+	1	Parent=Os11t0586001-00
Chr11	irgsp1_rep	CDS	22161578	22161687	.	+	1	Parent=Os11t0586001-00
Chr11	irgsp1_rep	CDS	22161767	22161887	.	+	2	Parent=Os11t0586001-00
Chr11	irgsp1_rep	CDS	22162839	22163102	.	+	1	Parent=Os11t0586001-00
Chr11	irgsp1_rep	CDS	22164268	22164658	.	+	1	Parent=Os11t0586001-00
Chr11	irgsp1_rep	mRNA	22167971	22173473	.	+	.	ID=Os11t0586100-01;Name=Os11t0586100-01;Locus_id=Os11g0586100;Oryzabase Gene Symbol Synonym(s)=OsPP2C76%2C PP2C76%2C OsPP122;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C76%2C protein phosphatase 2C 76%2C protein phosphatase 122;Note=Similar to protein kinase family protein.;Transcript_evidence=AK108746 (DDBJ%2C Best hit);ORF_evidence=NP_191892.2 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein phosphatase 2C (IPR015655),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-150-E12;Oryzabase=17947;TENOR=Os11t0586100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	22167971	22167972	.	+	.	Parent=Os11t0586100-01
Chr11	irgsp1_rep	CDS	22167973	22168170	.	+	0	Parent=Os11t0586100-01
Chr11	irgsp1_rep	CDS	22168434	22168491	.	+	0	Parent=Os11t0586100-01
Chr11	irgsp1_rep	CDS	22168622	22168709	.	+	2	Parent=Os11t0586100-01
Chr11	irgsp1_rep	CDS	22169385	22169456	.	+	1	Parent=Os11t0586100-01
Chr11	irgsp1_rep	CDS	22170462	22170545	.	+	1	Parent=Os11t0586100-01
Chr11	irgsp1_rep	CDS	22170629	22170772	.	+	1	Parent=Os11t0586100-01
Chr11	irgsp1_rep	CDS	22171414	22171492	.	+	1	Parent=Os11t0586100-01
Chr11	irgsp1_rep	CDS	22172058	22172140	.	+	0	Parent=Os11t0586100-01
Chr11	irgsp1_rep	CDS	22172233	22172287	.	+	1	Parent=Os11t0586100-01
Chr11	irgsp1_rep	CDS	22172801	22172860	.	+	0	Parent=Os11t0586100-01
Chr11	irgsp1_rep	three_prime_UTR	22172861	22173473	.	+	.	Parent=Os11t0586100-01
Chr11	irgsp1_rep	mRNA	22173768	22174764	.	-	.	ID=Os11t0586200-00;Name=Os11t0586200-00;Locus_id=Os11g0586200;CGSNL Gene Symbol=CML6;CGSNL Gene Name=CALMODULIN-LIKE PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsCML6;Oryzabase Gene Name Synonym(s)=calmodulin-like protein 6;Note=Similar to Calmodulin.;Transcript_evidence=FP097313 (DDBJ);ORF_evidence=Q39890 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);Oryzabase=10518;TENOR=Os11t0586200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	22174757	22174764	.	-	.	Parent=Os11t0586200-00
Chr11	irgsp1_rep	CDS	22174681	22174756	.	-	0	Parent=Os11t0586200-00
Chr11	irgsp1_rep	CDS	22174176	22174333	.	-	2	Parent=Os11t0586200-00
Chr11	irgsp1_rep	CDS	22173974	22174065	.	-	0	Parent=Os11t0586200-00
Chr11	irgsp1_rep	CDS	22173768	22173897	.	-	1	Parent=Os11t0586200-00
Chr11	irgsp1_rep	mRNA	22175524	22178916	.	-	.	ID=Os11t0586300-01;Name=Os11t0586300-01;Locus_id=Os11g0586300;Note=Conserved hypothetical protein.;Transcript_evidence=AK072257 (DDBJ%2C Best hit);ORF_evidence=Q2R1Z4 (UniProt);NIAS_FLcDNA=J023008H18;Expression=AK072257;TENOR=Os11t0586300-01;KEGG=Os11t0586300-01
Chr11	irgsp1_rep	five_prime_UTR	22178915	22178916	.	-	.	Parent=Os11t0586300-01
Chr11	irgsp1_rep	CDS	22178695	22178914	.	-	0	Parent=Os11t0586300-01
Chr11	irgsp1_rep	CDS	22178271	22178420	.	-	2	Parent=Os11t0586300-01
Chr11	irgsp1_rep	CDS	22176853	22177505	.	-	2	Parent=Os11t0586300-01
Chr11	irgsp1_rep	CDS	22176346	22176542	.	-	0	Parent=Os11t0586300-01
Chr11	irgsp1_rep	CDS	22175711	22176104	.	-	1	Parent=Os11t0586300-01
Chr11	irgsp1_rep	three_prime_UTR	22175524	22175710	.	-	.	Parent=Os11t0586300-01
Chr11	irgsp1_rep	mRNA	22175497	22176491	.	-	.	ID=Os11t0586300-02;Name=Os11t0586300-02;Locus_id=Os11g0586300;Note=Hypothetical conserved gene.;Transcript_evidence=AK104054 (DDBJ%2C Best hit);ORF_evidence=Q2R1Z4 (UniProt);NIAS_FLcDNA=001-024-A02;Expression=AK104054;TENOR=Os11t0586300-02;KEGG=Os11t0586300-02
Chr11	irgsp1_rep	CDS	22176346	22176491	.	-	0	Parent=Os11t0586300-02
Chr11	irgsp1_rep	CDS	22175711	22176104	.	-	1	Parent=Os11t0586300-02
Chr11	irgsp1_rep	three_prime_UTR	22175497	22175710	.	-	.	Parent=Os11t0586300-02
Chr11	irgsp1_rep	mRNA	22181041	22181568	.	-	.	ID=Os11t0586400-01;Name=Os11t0586400-01;Locus_id=Os11g0586400;RAP-DB Gene Symbol Synonym(s)=Xa10-Ni;RAP-DB Gene Name Synonym(s)=Xa10-like gene;Oryzabase Gene Symbol Synonym(s)=Xa10-Ni;Oryzabase Gene Name Synonym(s)=Xa10-like gene;Note=Functional executor R protein%2C Disease resistance to rice bacterial blight  (Nipponbare: susceptible%2C Susceptible xa10 allele has an identical open reading frame of Xa10 but differs in promoter region);Transcript_evidence=KY471354;ORF_evidence=Q2R1Z3;Manual Curation=June 4%2C 2020;Literature_PMID=28304228;Oryzabase=21725;TENOR=Os11t0586400-00;Subcellular location=endoplasmic reticulum membrane (GO:0005789)
Chr11	irgsp1_rep	five_prime_UTR	22181557	22181568	.	-	.	Parent=Os11t0586400-01
Chr11	irgsp1_rep	CDS	22181152	22181556	.	-	0	Parent=Os11t0586400-01
Chr11	irgsp1_rep	three_prime_UTR	22181041	22181151	.	-	.	Parent=Os11t0586400-01
Chr11	irgsp1_rep	mRNA	22203516	22204312	.	-	.	ID=Os11t0586701-01;Name=Os11t0586701-01;Locus_id=Os11g0586701;RAP-DB Gene Symbol Synonym(s)=Xa23-Ni%2C Xa23;CGSNL Gene Symbol=XA23;CGSNL Gene Name=XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 23;Oryzabase Gene Symbol Synonym(s)=Xa23(t)*%2C Xa23(t)%2C Xa23%2C Xa23-Ni;Oryzabase Gene Name Synonym(s)=Xanthomonas oryzae pv. oryzae resistance 23%2C Xanthomonas campestris pv. oryzae resistance-23%2C Xanthomonas oryzae pv. oryzae resistance-23;Note=Functional executor R protein%2C Disease resistance to rice bacterial blight (Nipponbare: susceptible%2C Susceptible xa23 allele has an identical open reading frame of Xa23 but differs in promoter region);Transcript_evidence=KY471355;ORF_evidence=A0A1V0EFJ0;Manual Curation=June 4%2C 2020;Literature_PMID=28304228,25385701;Oryzabase=2109;TENOR=Os11t0586701-00;Subcellular location=endoplasmic reticulum membrane (GO:0005789)
Chr11	irgsp1_rep	five_prime_UTR	22204076	22204312	.	-	.	Parent=Os11t0586701-01
Chr11	irgsp1_rep	CDS	22203734	22204075	.	-	0	Parent=Os11t0586701-01
Chr11	irgsp1_rep	three_prime_UTR	22203516	22203733	.	-	.	Parent=Os11t0586701-01
Chr11	irgsp1_rep	mRNA	22210206	22211724	.	-	.	ID=Os11t0586825-00;Name=Os11t0586825-00;Locus_id=Os11g0586825;Oryzabase Gene Symbol Synonym(s)=OsTBL63%2C TBL63;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 63;Note=Hypothetical conserved gene.;Transcript_evidence=BT043456 (DDBJ);ORF_evidence=Q5VQ37 (UniProt);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);Oryzabase=21516;TENOR=Os11t0586825-00;KEGG=Os11t0586825-00
Chr11	irgsp1_rep	CDS	22211242	22211724	.	-	0	Parent=Os11t0586825-00
Chr11	irgsp1_rep	CDS	22210581	22211111	.	-	0	Parent=Os11t0586825-00
Chr11	irgsp1_rep	CDS	22210233	22210499	.	-	0	Parent=Os11t0586825-00
Chr11	irgsp1_rep	three_prime_UTR	22210206	22210232	.	-	.	Parent=Os11t0586825-00
Chr11	irgsp1_rep	mRNA	22215791	22219014	.	+	.	ID=Os11t0586900-01;Name=Os11t0586900-01;Locus_id=Os11g0586900;CGSNL Gene Symbol=ARFC1;CGSNL Gene Name=ADP-RIBOSYLATION FACTOR C1;Oryzabase Gene Symbol Synonym(s)=OsARFC1%2C ARFC1;Oryzabase Gene Name Synonym(s)=ADP-ribosylation factor C1;Note=Similar to ADP-ribosylation factor-like protein 5.;Transcript_evidence=AK058229 (DDBJ%2C Best hit);ORF_evidence=B4FA33 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C SAR1-type (IPR006687),Small GTPase superfamily%2C ARF/SAR type (IPR006689),Small GTPase superfamily%2C ARF type (IPR024156);NIAS_FLcDNA=001-011-A04;Oryzabase=21012;Expression=AK058229;TENOR=Os11t0586900-01;KEGG=Os11t0586900-01
Chr11	irgsp1_rep	five_prime_UTR	22215791	22216009	.	+	.	Parent=Os11t0586900-01
Chr11	irgsp1_rep	CDS	22216010	22216201	.	+	0	Parent=Os11t0586900-01
Chr11	irgsp1_rep	CDS	22218486	22218848	.	+	0	Parent=Os11t0586900-01
Chr11	irgsp1_rep	three_prime_UTR	22218849	22219014	.	+	.	Parent=Os11t0586900-01
Chr11	irgsp1_rep	mRNA	22215879	22219119	.	+	.	ID=Os11t0586900-02;Name=Os11t0586900-02;Locus_id=Os11g0586900;CGSNL Gene Symbol=ARFC1;CGSNL Gene Name=ADP-RIBOSYLATION FACTOR C1;Oryzabase Gene Symbol Synonym(s)=OsARFC1%2C ARFC1;Oryzabase Gene Name Synonym(s)=ADP-ribosylation factor C1;Note=Similar to ADP-ribosylation factor-like protein 5.;Transcript_evidence=AK071632 (DDBJ%2C Best hit);ORF_evidence=B4FA33 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C SAR1-type (IPR006687),Small GTPase superfamily%2C ARF/SAR type (IPR006689),Small GTPase superfamily%2C ARF type (IPR024156);NIAS_FLcDNA=J023104M08;Oryzabase=21012;Expression=AK071632;TENOR=Os11t0586900-02;KEGG=Os11t0586900-02
Chr11	irgsp1_rep	five_prime_UTR	22215879	22216009	.	+	.	Parent=Os11t0586900-02
Chr11	irgsp1_rep	CDS	22216010	22216201	.	+	0	Parent=Os11t0586900-02
Chr11	irgsp1_rep	CDS	22218486	22218848	.	+	0	Parent=Os11t0586900-02
Chr11	irgsp1_rep	three_prime_UTR	22218849	22219119	.	+	.	Parent=Os11t0586900-02
Chr11	irgsp1_rep	mRNA	22221628	22226596	.	+	.	ID=Os11t0587000-01;Name=Os11t0587000-01;Locus_id=Os11g0587000;RAP-DB Gene Symbol Synonym(s)=D27;RAP-DB Gene Name Synonym(s)=Dwarf27%2C DWARF27;CGSNL Gene Symbol=D27;CGSNL Gene Name=DWARF BUNKETSUTO TILLERING;Oryzabase Gene Symbol Synonym(s)=d27(d t)%2C dt%2C dwf23%2C d27%2C OsD27;Oryzabase Gene Name Synonym(s)=bunketsuto tillering dwarf%2C dwarf-27%2C DWARF27%2C DWARF 27%2C iron-binding protein D27%2C OsDWARF27;Note=&beta%3B-carotene isomerase%2C Strigolactones biosynthesis;Transcript_evidence=FJ641055;ORF_evidence=C7AU21;InterPro=Domain of unknown function DUF4033 (IPR025114);Manual Curation=August 23%2C 2017;Literature_PMID=22422982,19470589;Oryzabase=936;TENOR=Os11t0587000-01
Chr11	irgsp1_rep	CDS	22221628	22221931	.	+	0	Parent=Os11t0587000-01
Chr11	irgsp1_rep	CDS	22223488	22223627	.	+	2	Parent=Os11t0587000-01
Chr11	irgsp1_rep	CDS	22223844	22223936	.	+	0	Parent=Os11t0587000-01
Chr11	irgsp1_rep	CDS	22224297	22224358	.	+	0	Parent=Os11t0587000-01
Chr11	irgsp1_rep	CDS	22224920	22225026	.	+	1	Parent=Os11t0587000-01
Chr11	irgsp1_rep	CDS	22226383	22226472	.	+	2	Parent=Os11t0587000-01
Chr11	irgsp1_rep	CDS	22226556	22226596	.	+	2	Parent=Os11t0587000-01
Chr11	irgsp1_rep	mRNA	22223651	22231042	.	+	.	ID=Os11t0587000-02;Name=Os11t0587000-02;Locus_id=Os11g0587000;CGSNL Gene Symbol=D27;CGSNL Gene Name=DWARF BUNKETSUTO TILLERING;Oryzabase Gene Symbol Synonym(s)=d27(d t)%2C dt%2C dwf23%2C d27%2C OsD27;Oryzabase Gene Name Synonym(s)=bunketsuto tillering dwarf%2C dwarf-27%2C DWARF27%2C DWARF 27%2C iron-binding protein D27%2C OsDWARF27;Note=Hypothetical protein.;Transcript_evidence=AK240965 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065046D15;Oryzabase=936;TENOR=Os11t0587000-02
Chr11	irgsp1_rep	five_prime_UTR	22223651	22224060	.	+	.	Parent=Os11t0587000-02
Chr11	irgsp1_rep	five_prime_UTR	22224960	22225060	.	+	.	Parent=Os11t0587000-02
Chr11	irgsp1_rep	five_prime_UTR	22226359	22226597	.	+	.	Parent=Os11t0587000-02
Chr11	irgsp1_rep	five_prime_UTR	22228815	22230284	.	+	.	Parent=Os11t0587000-02
Chr11	irgsp1_rep	CDS	22230285	22230842	.	+	0	Parent=Os11t0587000-02
Chr11	irgsp1_rep	three_prime_UTR	22230843	22231042	.	+	.	Parent=Os11t0587000-02
Chr11	irgsp1_rep	mRNA	22228797	22230884	.	-	.	ID=Os11t0587100-00;Name=Os11t0587100-00;Locus_id=Os11g0587100;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=BT062003 (DDBJ);ORF_evidence=NP_001068171.2 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os11t0587100-00;KEGG=Os11t0587100-00
Chr11	irgsp1_rep	CDS	22228851	22230884	.	-	0	Parent=Os11t0587100-00
Chr11	irgsp1_rep	three_prime_UTR	22228797	22228850	.	-	.	Parent=Os11t0587100-00
Chr11	irgsp1_rep	mRNA	22241918	22244524	.	-	.	ID=Os11t0587300-00;Name=Os11t0587300-00;Locus_id=Os11g0587300;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0007h15 (Wheat FLcDNA);ORF_evidence=B9G8D3 (UniProt);TENOR=Os11t0587300-00;KEGG=Os11t0587300-00
Chr11	irgsp1_rep	CDS	22244078	22244524	.	-	0	Parent=Os11t0587300-00
Chr11	irgsp1_rep	CDS	22241918	22243987	.	-	0	Parent=Os11t0587300-00
Chr11	irgsp1_rep	mRNA	22267505	22271370	.	-	.	ID=Os11t0587500-01;Name=Os11t0587500-01;Locus_id=Os11g0587500;Note=RabGAP/TBC domain containing protein.;Transcript_evidence=AK065976 (DDBJ%2C Best hit);ORF_evidence=NP_001148632.1 (RefSeq);GO=Biological Process: regulation of Rab GTPase activity (GO:0032313),Cellular Component: intracellular (GO:0005622),Molecular Function: Rab GTPase activator activity (GO:0005097);InterPro=Rab-GAP/TBC domain (IPR000195);NIAS_FLcDNA=J013047L05;Expression=AK065976;TENOR=Os11t0587500-01;KEGG=Os11t0587500-01
Chr11	irgsp1_rep	five_prime_UTR	22271195	22271370	.	-	.	Parent=Os11t0587500-01
Chr11	irgsp1_rep	CDS	22271096	22271194	.	-	0	Parent=Os11t0587500-01
Chr11	irgsp1_rep	CDS	22270778	22270873	.	-	0	Parent=Os11t0587500-01
Chr11	irgsp1_rep	CDS	22270104	22270207	.	-	0	Parent=Os11t0587500-01
Chr11	irgsp1_rep	CDS	22269312	22269571	.	-	1	Parent=Os11t0587500-01
Chr11	irgsp1_rep	CDS	22269083	22269205	.	-	2	Parent=Os11t0587500-01
Chr11	irgsp1_rep	CDS	22268907	22268995	.	-	2	Parent=Os11t0587500-01
Chr11	irgsp1_rep	CDS	22268749	22268817	.	-	0	Parent=Os11t0587500-01
Chr11	irgsp1_rep	three_prime_UTR	22268726	22268748	.	-	.	Parent=Os11t0587500-01
Chr11	irgsp1_rep	three_prime_UTR	22268530	22268627	.	-	.	Parent=Os11t0587500-01
Chr11	irgsp1_rep	three_prime_UTR	22268077	22268340	.	-	.	Parent=Os11t0587500-01
Chr11	irgsp1_rep	three_prime_UTR	22267848	22267931	.	-	.	Parent=Os11t0587500-01
Chr11	irgsp1_rep	three_prime_UTR	22267505	22267731	.	-	.	Parent=Os11t0587500-01
Chr11	irgsp1_rep	mRNA	22267848	22271250	.	+	.	ID=Os11t0587550-00;Name=Os11t0587550-00;Locus_id=Os11g0587550;Note=Hypothetical protein.;Transcript_evidence=tplb0038o07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0587550-00
Chr11	irgsp1_rep	five_prime_UTR	22267848	22267928	.	+	.	Parent=Os11t0587550-00
Chr11	irgsp1_rep	five_prime_UTR	22268074	22268340	.	+	.	Parent=Os11t0587550-00
Chr11	irgsp1_rep	five_prime_UTR	22268530	22268621	.	+	.	Parent=Os11t0587550-00
Chr11	irgsp1_rep	five_prime_UTR	22268712	22268831	.	+	.	Parent=Os11t0587550-00
Chr11	irgsp1_rep	five_prime_UTR	22268907	22268994	.	+	.	Parent=Os11t0587550-00
Chr11	irgsp1_rep	five_prime_UTR	22269082	22269220	.	+	.	Parent=Os11t0587550-00
Chr11	irgsp1_rep	five_prime_UTR	22269325	22269556	.	+	.	Parent=Os11t0587550-00
Chr11	irgsp1_rep	CDS	22269557	22269566	.	+	0	Parent=Os11t0587550-00
Chr11	irgsp1_rep	CDS	22270096	22270193	.	+	2	Parent=Os11t0587550-00
Chr11	irgsp1_rep	CDS	22270763	22270862	.	+	0	Parent=Os11t0587550-00
Chr11	irgsp1_rep	CDS	22271089	22271153	.	+	2	Parent=Os11t0587550-00
Chr11	irgsp1_rep	three_prime_UTR	22271154	22271250	.	+	.	Parent=Os11t0587550-00
Chr11	irgsp1_rep	mRNA	22272841	22282403	.	-	.	ID=Os11t0587600-01;Name=Os11t0587600-01;Locus_id=Os11g0587600;CGSNL Gene Symbol=PDR3;CGSNL Gene Name=PLEIOTROPIC DRUG RESISTANCE 3;Oryzabase Gene Symbol Synonym(s)=OsABCG48%2C OsPDR3;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 48%2C pleiotropic drug resistance 3;Note=Similar to PDR-like ABC transporter.;Transcript_evidence=AK121517 (DDBJ%2C Best hit);ORF_evidence=Q8GU84 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC-2 type transporter (IPR013525);NIAS_FLcDNA=J033027B16;Oryzabase=12021;TENOR=Os11t0587600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	22282326	22282403	.	-	.	Parent=Os11t0587600-01
Chr11	irgsp1_rep	CDS	22281904	22282325	.	-	0	Parent=Os11t0587600-01
Chr11	irgsp1_rep	CDS	22281688	22281808	.	-	1	Parent=Os11t0587600-01
Chr11	irgsp1_rep	CDS	22279700	22279782	.	-	0	Parent=Os11t0587600-01
Chr11	irgsp1_rep	CDS	22279526	22279610	.	-	1	Parent=Os11t0587600-01
Chr11	irgsp1_rep	CDS	22278872	22279162	.	-	0	Parent=Os11t0587600-01
Chr11	irgsp1_rep	CDS	22278677	22278767	.	-	0	Parent=Os11t0587600-01
Chr11	irgsp1_rep	CDS	22277626	22278530	.	-	2	Parent=Os11t0587600-01
Chr11	irgsp1_rep	three_prime_UTR	22277162	22277625	.	-	.	Parent=Os11t0587600-01
Chr11	irgsp1_rep	three_prime_UTR	22276858	22277023	.	-	.	Parent=Os11t0587600-01
Chr11	irgsp1_rep	three_prime_UTR	22276378	22276768	.	-	.	Parent=Os11t0587600-01
Chr11	irgsp1_rep	three_prime_UTR	22275906	22276238	.	-	.	Parent=Os11t0587600-01
Chr11	irgsp1_rep	three_prime_UTR	22275505	22275795	.	-	.	Parent=Os11t0587600-01
Chr11	irgsp1_rep	three_prime_UTR	22275344	22275427	.	-	.	Parent=Os11t0587600-01
Chr11	irgsp1_rep	three_prime_UTR	22274950	22275084	.	-	.	Parent=Os11t0587600-01
Chr11	irgsp1_rep	three_prime_UTR	22274565	22274797	.	-	.	Parent=Os11t0587600-01
Chr11	irgsp1_rep	three_prime_UTR	22274278	22274449	.	-	.	Parent=Os11t0587600-01
Chr11	irgsp1_rep	three_prime_UTR	22273528	22273782	.	-	.	Parent=Os11t0587600-01
Chr11	irgsp1_rep	three_prime_UTR	22272841	22273432	.	-	.	Parent=Os11t0587600-01
Chr11	irgsp1_rep	mRNA	22301763	22303659	.	+	.	ID=Os11t0588100-00;Name=Os11t0588100-00;Locus_id=Os11g0588100;Oryzabase Gene Symbol Synonym(s)=OsSTA264%2C STA264%2C Duf6%2C qSCT11;Oryzabase Gene Name Synonym(s)=QTL for seedling cold tolerance on Chromosome 11;Note=Similar to Integral membrane protein DUF6 containing protein%2C expressed.;Transcript_evidence=BT038560 (DDBJ);ORF_evidence=Q2R1X7 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);Oryzabase=19528;TENOR=Os11t0588100-00;KEGG=Os11t0588100-00
Chr11	irgsp1_rep	CDS	22301763	22302979	.	+	0	Parent=Os11t0588100-00
Chr11	irgsp1_rep	CDS	22303500	22303659	.	+	1	Parent=Os11t0588100-00
Chr11	irgsp1_rep	mRNA	22305918	22310081	.	+	.	ID=Os11t0588300-01;Name=Os11t0588300-01;Locus_id=Os11g0588300;CGSNL Gene Symbol=GSTT1;CGSNL Gene Name=THETA GLUTATHIONE S-TRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=OsGSTT1;Note=Similar to Glutathione transferase AtGST 10 (EC 2.5.1.18).;Transcript_evidence=AK060166 (DDBJ%2C Best hit);ORF_evidence=NP_001152125.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=006-311-D09;Oryzabase=9520;Expression=AK060166;TENOR=Os11t0588300-01;KEGG=Os11t0588300-01 (EC:2.5.1.18)
Chr11	irgsp1_rep	five_prime_UTR	22305918	22306000	.	+	.	Parent=Os11t0588300-01
Chr11	irgsp1_rep	CDS	22306001	22306071	.	+	0	Parent=Os11t0588300-01
Chr11	irgsp1_rep	CDS	22306162	22306235	.	+	1	Parent=Os11t0588300-01
Chr11	irgsp1_rep	CDS	22306377	22306437	.	+	2	Parent=Os11t0588300-01
Chr11	irgsp1_rep	CDS	22307114	22307167	.	+	1	Parent=Os11t0588300-01
Chr11	irgsp1_rep	CDS	22308819	22308898	.	+	1	Parent=Os11t0588300-01
Chr11	irgsp1_rep	CDS	22309167	22309372	.	+	2	Parent=Os11t0588300-01
Chr11	irgsp1_rep	CDS	22309604	22309798	.	+	0	Parent=Os11t0588300-01
Chr11	irgsp1_rep	three_prime_UTR	22309799	22310081	.	+	.	Parent=Os11t0588300-01
Chr11	irgsp1_rep	mRNA	22305951	22310081	.	+	.	ID=Os11t0588300-02;Name=Os11t0588300-02;Locus_id=Os11g0588300;CGSNL Gene Symbol=GSTT1;CGSNL Gene Name=THETA GLUTATHIONE S-TRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=OsGSTT1;Note=Similar to Glutathione transferase AtGST 10 (EC 2.5.1.18).;Transcript_evidence=AK104738 (DDBJ%2C Best hit);ORF_evidence=NP_001152125.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=001-038-D05;Oryzabase=9520;Expression=AK104738;TENOR=Os11t0588300-02;KEGG=Os11t0588300-02 (EC:2.5.1.18)
Chr11	irgsp1_rep	five_prime_UTR	22305951	22306000	.	+	.	Parent=Os11t0588300-02
Chr11	irgsp1_rep	CDS	22306001	22306071	.	+	0	Parent=Os11t0588300-02
Chr11	irgsp1_rep	CDS	22306162	22306235	.	+	1	Parent=Os11t0588300-02
Chr11	irgsp1_rep	CDS	22306377	22306437	.	+	2	Parent=Os11t0588300-02
Chr11	irgsp1_rep	CDS	22307114	22307167	.	+	1	Parent=Os11t0588300-02
Chr11	irgsp1_rep	CDS	22308819	22308898	.	+	1	Parent=Os11t0588300-02
Chr11	irgsp1_rep	CDS	22309167	22309372	.	+	2	Parent=Os11t0588300-02
Chr11	irgsp1_rep	CDS	22309604	22309798	.	+	0	Parent=Os11t0588300-02
Chr11	irgsp1_rep	three_prime_UTR	22309799	22310081	.	+	.	Parent=Os11t0588300-02
Chr11	irgsp1_rep	mRNA	22310966	22319156	.	+	.	ID=Os11t0588400-01;Name=Os11t0588400-01;Locus_id=Os11g0588400;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=AK066872 (DDBJ%2C Best hit);ORF_evidence=Q2R1X5 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013084C07;TENOR=Os11t0588400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	22310966	22311145	.	+	.	Parent=Os11t0588400-01
Chr11	irgsp1_rep	five_prime_UTR	22314642	22314733	.	+	.	Parent=Os11t0588400-01
Chr11	irgsp1_rep	five_prime_UTR	22315252	22315256	.	+	.	Parent=Os11t0588400-01
Chr11	irgsp1_rep	CDS	22315257	22316053	.	+	0	Parent=Os11t0588400-01
Chr11	irgsp1_rep	CDS	22316543	22318474	.	+	1	Parent=Os11t0588400-01
Chr11	irgsp1_rep	CDS	22318833	22318839	.	+	1	Parent=Os11t0588400-01
Chr11	irgsp1_rep	three_prime_UTR	22318840	22319156	.	+	.	Parent=Os11t0588400-01
Chr11	irgsp1_rep	mRNA	22318116	22319137	.	+	.	ID=Os11t0588400-02;Name=Os11t0588400-02;Locus_id=Os11g0588400;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=AK070352 (DDBJ%2C Best hit);ORF_evidence=Q2R1X5 (UniProt);NIAS_FLcDNA=J023051F10;Expression=AK070352;TENOR=Os11t0588400-02;KEGG=Os11t0588400-02
Chr11	irgsp1_rep	CDS	22318116	22318493	.	+	0	Parent=Os11t0588400-02
Chr11	irgsp1_rep	three_prime_UTR	22318494	22319137	.	+	.	Parent=Os11t0588400-02
Chr11	irgsp1_rep	mRNA	22328967	22333982	.	+	.	ID=Os11t0588600-01;Name=Os11t0588600-01;Locus_id=Os11g0588600;CGSNL Gene Symbol=XA39;CGSNL Gene Name=XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 39;Oryzabase Gene Symbol Synonym(s)=Xa39;Oryzabase Gene Name Synonym(s)=Xanthomonas oryzae pv. oryzae resistance 39;Note=NB-ARC domain containing protein.;Transcript_evidence=AK066312 (DDBJ%2C Best hit);ORF_evidence=Q2R1X5 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);NIAS_FLcDNA=J013067O06;Oryzabase=19121;Expression=AK066312;TENOR=Os11t0588600-01;KEGG=Os11t0588600-01
Chr11	irgsp1_rep	five_prime_UTR	22328967	22329110	.	+	.	Parent=Os11t0588600-01
Chr11	irgsp1_rep	five_prime_UTR	22329873	22329988	.	+	.	Parent=Os11t0588600-01
Chr11	irgsp1_rep	CDS	22329989	22330810	.	+	0	Parent=Os11t0588600-01
Chr11	irgsp1_rep	three_prime_UTR	22330811	22333179	.	+	.	Parent=Os11t0588600-01
Chr11	irgsp1_rep	three_prime_UTR	22333357	22333656	.	+	.	Parent=Os11t0588600-01
Chr11	irgsp1_rep	three_prime_UTR	22333757	22333982	.	+	.	Parent=Os11t0588600-01
Chr11	irgsp1_rep	mRNA	22335263	22335689	.	-	.	ID=Os11t0588766-00;Name=Os11t0588766-00;Locus_id=Os11g0588766;Note=Similar to Calmodulin-like protein.;Transcript_evidence=FP092107 (DDBJ);ORF_evidence=D9J2J8 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand-like domain (IPR011992);TENOR=Os11t0588766-00
Chr11	irgsp1_rep	CDS	22335549	22335689	.	-	0	Parent=Os11t0588766-00
Chr11	irgsp1_rep	three_prime_UTR	22335263	22335548	.	-	.	Parent=Os11t0588766-00
Chr11	irgsp1_rep	mRNA	22373609	22374749	.	-	.	ID=Os11t0589600-00;Name=Os11t0589600-00;Locus_id=Os11g0589600;Note=Conserved hypothetical protein.;Transcript_evidence=AK335623 (DDBJ);ORF_evidence=B8BMC8 (UniProt);TENOR=Os11t0589600-00
Chr11	irgsp1_rep	five_prime_UTR	22374339	22374749	.	-	.	Parent=Os11t0589600-00
Chr11	irgsp1_rep	CDS	22374144	22374338	.	-	0	Parent=Os11t0589600-00
Chr11	irgsp1_rep	CDS	22373770	22373802	.	-	0	Parent=Os11t0589600-00
Chr11	irgsp1_rep	three_prime_UTR	22373609	22373769	.	-	.	Parent=Os11t0589600-00
Chr11	irgsp1_rep	mRNA	22382356	22384989	.	+	.	ID=Os11t0589800-00;Name=Os11t0589800-00;Locus_id=Os11g0589800;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=AK334739 (DDBJ);ORF_evidence=Q2R1W1 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os11t0589800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	22382356	22383051	.	+	0	Parent=Os11t0589800-00
Chr11	irgsp1_rep	three_prime_UTR	22383052	22383185	.	+	.	Parent=Os11t0589800-00
Chr11	irgsp1_rep	three_prime_UTR	22383327	22383903	.	+	.	Parent=Os11t0589800-00
Chr11	irgsp1_rep	three_prime_UTR	22384155	22384989	.	+	.	Parent=Os11t0589800-00
Chr11	irgsp1_rep	mRNA	22419268	22423063	.	+	.	ID=Os11t0590400-00;Name=Os11t0590400-00;Locus_id=Os11g0590400;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R1W1 (UniProt);TENOR=Os11t0590400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	22419268	22419784	.	+	0	Parent=Os11t0590400-00
Chr11	irgsp1_rep	CDS	22419998	22420088	.	+	2	Parent=Os11t0590400-00
Chr11	irgsp1_rep	CDS	22421766	22422075	.	+	1	Parent=Os11t0590400-00
Chr11	irgsp1_rep	CDS	22422110	22422793	.	+	0	Parent=Os11t0590400-00
Chr11	irgsp1_rep	CDS	22422962	22423063	.	+	0	Parent=Os11t0590400-00
Chr11	irgsp1_rep	mRNA	22427774	22435407	.	+	.	ID=Os11t0590700-01;Name=Os11t0590700-01;Locus_id=Os11g0590700;Oryzabase Gene Name Synonym(s)=RPP13-like protein 3;Note=NB-ARC domain containing protein.;Transcript_evidence=AK066717 (DDBJ%2C Best hit);ORF_evidence=Q2R1W1 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013082K15;Oryzabase=22550;Expression=AK066717;TENOR=Os11t0590700-01;KEGG=Os11t0590700-01
Chr11	irgsp1_rep	five_prime_UTR	22427774	22427971	.	+	.	Parent=Os11t0590700-01
Chr11	irgsp1_rep	five_prime_UTR	22428307	22428414	.	+	.	Parent=Os11t0590700-01
Chr11	irgsp1_rep	CDS	22428415	22429232	.	+	0	Parent=Os11t0590700-01
Chr11	irgsp1_rep	CDS	22432355	22434101	.	+	1	Parent=Os11t0590700-01
Chr11	irgsp1_rep	three_prime_UTR	22434102	22434239	.	+	.	Parent=Os11t0590700-01
Chr11	irgsp1_rep	three_prime_UTR	22434667	22434822	.	+	.	Parent=Os11t0590700-01
Chr11	irgsp1_rep	three_prime_UTR	22434926	22435012	.	+	.	Parent=Os11t0590700-01
Chr11	irgsp1_rep	three_prime_UTR	22435094	22435407	.	+	.	Parent=Os11t0590700-01
Chr11	irgsp1_rep	mRNA	22444128	22445393	.	+	.	ID=Os11t0590900-00;Name=Os11t0590900-00;Locus_id=Os11g0590900;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R1W1 (UniProt);TENOR=Os11t0590900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	22444128	22445393	.	+	0	Parent=Os11t0590900-00
Chr11	irgsp1_rep	mRNA	22454589	22458547	.	+	.	ID=Os11t0591000-01;Name=Os11t0591000-01;Locus_id=Os11g0591000;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=AK240970 (DDBJ%2C Best hit);ORF_evidence=Q2R1W1 (UniProt);NIAS_FLcDNA=J065047F12;TENOR=Os11t0591000-01;KEGG=Os11t0591000-01
Chr11	irgsp1_rep	five_prime_UTR	22454589	22454590	.	+	.	Parent=Os11t0591000-01
Chr11	irgsp1_rep	CDS	22454591	22455187	.	+	0	Parent=Os11t0591000-01
Chr11	irgsp1_rep	CDS	22455396	22455506	.	+	0	Parent=Os11t0591000-01
Chr11	irgsp1_rep	CDS	22458132	22458188	.	+	0	Parent=Os11t0591000-01
Chr11	irgsp1_rep	three_prime_UTR	22458189	22458547	.	+	.	Parent=Os11t0591000-01
Chr11	irgsp1_rep	mRNA	22459933	22464679	.	-	.	ID=Os11t0591100-01;Name=Os11t0591100-01;Locus_id=Os11g0591100;Oryzabase Gene Symbol Synonym(s)=OsGME2%2C GME2;Oryzabase Gene Name Synonym(s)=GDP-D-mannose epimerase 2;Note=NAD(P)-binding domain containing protein.;Transcript_evidence=AK102348 (DDBJ%2C Best hit);ORF_evidence=Q2R1V8 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD-dependent epimerase/dehydratase (IPR001509),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033091C16;Oryzabase=19912;Expression=AK102348;TENOR=Os11t0591100-01;KEGG=Os11t0591100-01
Chr11	irgsp1_rep	five_prime_UTR	22464608	22464679	.	-	.	Parent=Os11t0591100-01
Chr11	irgsp1_rep	five_prime_UTR	22463688	22463688	.	-	.	Parent=Os11t0591100-01
Chr11	irgsp1_rep	CDS	22463293	22463687	.	-	0	Parent=Os11t0591100-01
Chr11	irgsp1_rep	CDS	22462034	22462127	.	-	1	Parent=Os11t0591100-01
Chr11	irgsp1_rep	CDS	22461810	22461939	.	-	0	Parent=Os11t0591100-01
Chr11	irgsp1_rep	CDS	22461600	22461732	.	-	2	Parent=Os11t0591100-01
Chr11	irgsp1_rep	CDS	22460534	22460741	.	-	1	Parent=Os11t0591100-01
Chr11	irgsp1_rep	CDS	22460275	22460430	.	-	0	Parent=Os11t0591100-01
Chr11	irgsp1_rep	three_prime_UTR	22459933	22460274	.	-	.	Parent=Os11t0591100-01
Chr11	irgsp1_rep	mRNA	22468348	22471203	.	-	.	ID=Os11t0591200-01;Name=Os11t0591200-01;Locus_id=Os11g0591200;Note=Similar to 3-ketoacyl-CoA synthase.;Transcript_evidence=AK120567 (DDBJ%2C Best hit);ORF_evidence=Q2R1V7 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: metabolic process (GO:0008152),Biological Process: lipid biosynthetic process (GO:0008610),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Very-long-chain 3-ketoacyl-CoA synthase (IPR012392),FAE1/Type III polyketide synthase-like protein (IPR013601),3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (IPR013747),Thiolase-like%2C subgroup (IPR016038),Thiolase-like (IPR016039);NIAS_FLcDNA=J013134A09;TENOR=Os11t0591200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	22471202	22471203	.	-	.	Parent=Os11t0591200-01
Chr11	irgsp1_rep	CDS	22470716	22471201	.	-	0	Parent=Os11t0591200-01
Chr11	irgsp1_rep	CDS	22468570	22469382	.	-	0	Parent=Os11t0591200-01
Chr11	irgsp1_rep	three_prime_UTR	22468348	22468569	.	-	.	Parent=Os11t0591200-01
Chr11	irgsp1_rep	mRNA	22468593	22471382	.	+	.	ID=Os11t0591300-00;Name=Os11t0591300-00;Locus_id=Os11g0591300;Note=Hypothetical protein.;Transcript_evidence=tplb0030b11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0591300-00
Chr11	irgsp1_rep	five_prime_UTR	22468593	22468593	.	+	.	Parent=Os11t0591300-00
Chr11	irgsp1_rep	CDS	22468594	22469370	.	+	0	Parent=Os11t0591300-00
Chr11	irgsp1_rep	CDS	22470703	22470705	.	+	0	Parent=Os11t0591300-00
Chr11	irgsp1_rep	three_prime_UTR	22470706	22471382	.	+	.	Parent=Os11t0591300-00
Chr11	irgsp1_rep	mRNA	22485140	22490224	.	-	.	ID=Os11t0591400-01;Name=Os11t0591400-01;Locus_id=Os11g0591400;Note=Conserved hypothetical protein.;Transcript_evidence=AK062944 (DDBJ%2C Best hit);ORF_evidence=A2Y2H1 (UniProt);NIAS_FLcDNA=001-109-C01;TENOR=Os11t0591400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	22490128	22490224	.	-	.	Parent=Os11t0591400-01
Chr11	irgsp1_rep	CDS	22489919	22490127	.	-	0	Parent=Os11t0591400-01
Chr11	irgsp1_rep	CDS	22485270	22485297	.	-	1	Parent=Os11t0591400-01
Chr11	irgsp1_rep	three_prime_UTR	22485140	22485269	.	-	.	Parent=Os11t0591400-01
Chr11	irgsp1_rep	mRNA	22491486	22492163	.	+	.	ID=Os11t0591550-00;Name=Os11t0591550-00;Locus_id=Os11g0591550;Oryzabase Gene Symbol Synonym(s)=OsDJ-1F%2C DJ-1F;Oryzabase Gene Name Synonym(s)=DJ-1/PfpI domain containing protein F%2C DJ-1 protein F;Note=ThiJ/PfpI domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001068186.1 (RefSeq);InterPro=ThiJ/PfpI (IPR002818);Oryzabase=20917;TENOR=Os11t0591550-00
Chr11	irgsp1_rep	CDS	22491486	22492163	.	+	0	Parent=Os11t0591550-00
Chr11	irgsp1_rep	mRNA	22494198	22495600	.	+	.	ID=Os11t0591700-01;Name=Os11t0591700-01;Locus_id=Os11g0591700;RAP-DB Gene Symbol Synonym(s)=OsPR4e;RAP-DB Gene Name Synonym(s)=pathogenesis-related protein 4e;CGSNL Gene Symbol=PR4E;CGSNL Gene Name=PATHOGENESIS-RELATED GENE 4E;Oryzabase Gene Symbol Synonym(s)=OsPR4e;Oryzabase Gene Name Synonym(s)=pathogenesis-related protein 4e%2C PR protein 4e;Note=Pathogenesis-related (PR) protein;Transcript_evidence=Inferred from literature;ORF_evidence=Q2R1V4;GO=Biological Process: defense response to bacterium (GO:0042742),Biological Process: defense response to fungus (GO:0050832);InterPro=RlpA-like domain superfamily (IPR036908),Barwin domain (IPR001153),Barwin%2C conserved site (IPR018226);Manual Curation=August 31%2C 2020;Literature_PMID=21955397;Oryzabase=11432;TENOR=Os11t0591700-00
Chr11	irgsp1_rep	CDS	22494198	22494207	.	+	0	Parent=Os11t0591700-01
Chr11	irgsp1_rep	CDS	22495097	22495224	.	+	2	Parent=Os11t0591700-01
Chr11	irgsp1_rep	CDS	22495430	22495600	.	+	0	Parent=Os11t0591700-01
Chr11	irgsp1_rep	mRNA	22498563	22500355	.	+	.	ID=Os11t0591800-01;Name=Os11t0591800-01;Locus_id=Os11g0591800;RAP-DB Gene Symbol Synonym(s)=OsPR4d;RAP-DB Gene Name Synonym(s)=pathogenesis-related protein 4d;CGSNL Gene Symbol=PR4D;CGSNL Gene Name=PATHOGENESIS-RELATED GENE 4D;Oryzabase Gene Symbol Synonym(s)=OsPR4d;Oryzabase Gene Name Synonym(s)=pathogenesis-related protein 4d%2C PR protein 4d;Note=Pathogenesis-related (PR) protein%2C Abiotic stress response%2C Disease resistance;Transcript_evidence=AK243507;ORF_evidence=Q2R1V3;GO=Biological Process: defense response to bacterium (GO:0042742),Biological Process: defense response to fungus (GO:0050832);InterPro=RlpA-like domain superfamily (IPR036908),Barwin domain (IPR001153),Barwin%2C conserved site (IPR018226);NIAS_FLcDNA=J100074P06;Manual Curation=August 27%2C 2020;Literature_PMID=21955397;Oryzabase=11431;TENOR=Os11t0591800-01;KEGG=Os11t0591800-01
Chr11	irgsp1_rep	five_prime_UTR	22498563	22498602	.	+	.	Parent=Os11t0591800-01
Chr11	irgsp1_rep	five_prime_UTR	22499165	22499192	.	+	.	Parent=Os11t0591800-01
Chr11	irgsp1_rep	CDS	22499193	22499468	.	+	0	Parent=Os11t0591800-01
Chr11	irgsp1_rep	CDS	22499943	22500143	.	+	0	Parent=Os11t0591800-01
Chr11	irgsp1_rep	three_prime_UTR	22500144	22500355	.	+	.	Parent=Os11t0591800-01
Chr11	irgsp1_rep	mRNA	22502008	22502923	.	+	.	ID=Os11t0592000-01;Name=Os11t0592000-01;Locus_id=Os11g0592000;RAP-DB Gene Symbol Synonym(s)=OsPR4c;RAP-DB Gene Name Synonym(s)=pathogenesis-related protein 4c;CGSNL Gene Symbol=PR4C;CGSNL Gene Name=PATHOGENESIS-RELATED GENE 4C;Oryzabase Gene Symbol Synonym(s)=OsPR4c;Oryzabase Gene Name Synonym(s)=pathogenesis-related protein 4c%2C PR protein 4c;Note=Pathogenesis-related (PR) protein%2C Abiotic stress response%2C Disease resistance;Transcript_evidence=AK121059;ORF_evidence=Q2R1V2;GO=Biological Process: defense response to bacterium (GO:0042742),Biological Process: defense response to fungus (GO:0050832);InterPro=RlpA-like domain superfamily (IPR036908),Barwin domain (IPR001153),Barwin%2C conserved site (IPR018226);NIAS_FLcDNA=J023056K07;Manual Curation=August 27%2C 2020;Literature_PMID=21955397;Oryzabase=11430;Expression=AK121059;TENOR=Os11t0592000-01;KEGG=Os11t0592000-01
Chr11	irgsp1_rep	five_prime_UTR	22502008	22502077	.	+	.	Parent=Os11t0592000-01
Chr11	irgsp1_rep	CDS	22502078	22502353	.	+	0	Parent=Os11t0592000-01
Chr11	irgsp1_rep	CDS	22502527	22502703	.	+	0	Parent=Os11t0592000-01
Chr11	irgsp1_rep	three_prime_UTR	22502704	22502923	.	+	.	Parent=Os11t0592000-01
Chr11	irgsp1_rep	mRNA	22505993	22507412	.	+	.	ID=Os11t0592100-01;Name=Os11t0592100-01;Locus_id=Os11g0592100;RAP-DB Gene Symbol Synonym(s)=OsPR4b%2C OsPR-4b;RAP-DB Gene Name Synonym(s)=pathogenesis-related protein 4b;CGSNL Gene Symbol=PR4B;CGSNL Gene Name=PATHOGENESIS-RELATED GENE 4B;Oryzabase Gene Symbol Synonym(s)=OsPR4b%2C OsPR-4b;Oryzabase Gene Name Synonym(s)=pathogenesis-related protein 4b%2C PR protein 4b;Note=Pathogenesis-related (PR) protein%2C Abiotic stress response%2C Disease resistance;Transcript_evidence=AK063234;ORF_evidence=Q2R1V1;GO=Biological Process: defense response to bacterium (GO:0042742),Biological Process: defense response to fungus (GO:0050832);InterPro=RlpA-like domain superfamily (IPR036908),Barwin domain (IPR001153),Barwin%2C conserved site (IPR018226);NIAS_FLcDNA=001-112-F08;Manual Curation=August 27%2C 2020;Literature_PMID=21955397;Oryzabase=11429;Expression=AK063234;TENOR=Os11t0592100-01;KEGG=Os11t0592100-01
Chr11	irgsp1_rep	five_prime_UTR	22505993	22506055	.	+	.	Parent=Os11t0592100-01
Chr11	irgsp1_rep	CDS	22506056	22506337	.	+	0	Parent=Os11t0592100-01
Chr11	irgsp1_rep	CDS	22507028	22507204	.	+	0	Parent=Os11t0592100-01
Chr11	irgsp1_rep	three_prime_UTR	22507205	22507412	.	+	.	Parent=Os11t0592100-01
Chr11	irgsp1_rep	mRNA	22511506	22512374	.	+	.	ID=Os11t0592200-01;Name=Os11t0592200-01;Locus_id=Os11g0592200;RAP-DB Gene Symbol Synonym(s)=OsPR4a%2C OsPR4;RAP-DB Gene Name Synonym(s)=pathogenesis-related protein 4a;CGSNL Gene Symbol=PR4;CGSNL Gene Name=PATHOGENESIS-RELATED GENE 4;Oryzabase Gene Symbol Synonym(s)=OsPR4%2C OsPR4a%2C PR4a%2C OsPR-4;Oryzabase Gene Name Synonym(s)=pathogenesis-related gene 4%2C pathogenesis-related type 4%2C pathogenesis-related protein 4a%2C PR protein 4a;Note=Pathogenesis-related (PR) protein%2C Drought tolerance%2C Abiotic stress response%2C Disease resistance;Transcript_evidence=AK121127;ORF_evidence=Q941F5;GO=Biological Process: defense response to bacterium (GO:0042742),Biological Process: defense response to fungus (GO:0050832);InterPro=RlpA-like domain superfamily (IPR036908),Barwin domain (IPR001153);NIAS_FLcDNA=J023075A19;Manual Curation=August 27%2C 2020;Literature_PMID=21955397;Oryzabase=6280;Expression=AK121127;TENOR=Os11t0592200-01;KEGG=Os11t0592200-01
Chr11	irgsp1_rep	five_prime_UTR	22511506	22511584	.	+	.	Parent=Os11t0592200-01
Chr11	irgsp1_rep	five_prime_UTR	22511714	22511725	.	+	.	Parent=Os11t0592200-01
Chr11	irgsp1_rep	CDS	22511726	22511998	.	+	0	Parent=Os11t0592200-01
Chr11	irgsp1_rep	CDS	22512084	22512251	.	+	0	Parent=Os11t0592200-01
Chr11	irgsp1_rep	three_prime_UTR	22512252	22512374	.	+	.	Parent=Os11t0592200-01
Chr11	irgsp1_rep	mRNA	22514191	22516597	.	-	.	ID=Os11t0592300-01;Name=Os11t0592300-01;Locus_id=Os11g0592300;CGSNL Gene Symbol=GAUT14;CGSNL Gene Name=GALACTURONOSYLTRANSFERASE 14;Oryzabase Gene Symbol Synonym(s)=OsGAUT14;Oryzabase Gene Name Synonym(s)=galacturonosyltransferase 14;Note=Glycosyl transferase%2C family 8 protein.;Transcript_evidence=AK110778 (DDBJ%2C Best hit);ORF_evidence=Q2R1U9 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 8 (IPR002495);NIAS_FLcDNA=002-171-B09;Oryzabase=23255;Expression=AK110778;TENOR=Os11t0592300-01;KEGG=Os11t0592300-01
Chr11	irgsp1_rep	five_prime_UTR	22516596	22516597	.	-	.	Parent=Os11t0592300-01
Chr11	irgsp1_rep	CDS	22516534	22516595	.	-	0	Parent=Os11t0592300-01
Chr11	irgsp1_rep	CDS	22516038	22516395	.	-	1	Parent=Os11t0592300-01
Chr11	irgsp1_rep	CDS	22515106	22515624	.	-	0	Parent=Os11t0592300-01
Chr11	irgsp1_rep	CDS	22514384	22514659	.	-	0	Parent=Os11t0592300-01
Chr11	irgsp1_rep	three_prime_UTR	22514191	22514383	.	-	.	Parent=Os11t0592300-01
Chr11	irgsp1_rep	mRNA	22518901	22519086	.	-	.	ID=Os11t0592350-00;Name=Os11t0592350-00;Locus_id=Os11g0592350;Note=Photosystem II reaction center protein K.;Transcript_evidence=P0C408 (UniProt);ORF_evidence=P0C408 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: photosystem II reaction center (GO:0009539);InterPro=Photosystem II PsbK (IPR003687);TENOR=Os11t0592350-00
Chr11	irgsp1_rep	CDS	22518901	22519086	.	-	0	Parent=Os11t0592350-00
Chr11	irgsp1_rep	mRNA	22523647	22529580	.	+	.	ID=Os11t0592375-00;Name=Os11t0592375-00;Locus_id=Os11g0592375;Note=Hypothetical protein.;Transcript_evidence=tplb0045k10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0592375-00
Chr11	irgsp1_rep	five_prime_UTR	22523647	22524046	.	+	.	Parent=Os11t0592375-00
Chr11	irgsp1_rep	five_prime_UTR	22524144	22524296	.	+	.	Parent=Os11t0592375-00
Chr11	irgsp1_rep	five_prime_UTR	22524596	22524900	.	+	.	Parent=Os11t0592375-00
Chr11	irgsp1_rep	five_prime_UTR	22525134	22525276	.	+	.	Parent=Os11t0592375-00
Chr11	irgsp1_rep	five_prime_UTR	22525661	22525997	.	+	.	Parent=Os11t0592375-00
Chr11	irgsp1_rep	five_prime_UTR	22527212	22527352	.	+	.	Parent=Os11t0592375-00
Chr11	irgsp1_rep	five_prime_UTR	22527452	22527783	.	+	.	Parent=Os11t0592375-00
Chr11	irgsp1_rep	CDS	22527784	22527936	.	+	0	Parent=Os11t0592375-00
Chr11	irgsp1_rep	CDS	22528874	22529580	.	+	0	Parent=Os11t0592375-00
Chr11	irgsp1_rep	mRNA	22523670	22529610	.	-	.	ID=Os11t0592400-00;Name=Os11t0592400-00;Locus_id=Os11g0592400;CGSNL Gene Symbol=CFM3;Oryzabase Gene Symbol Synonym(s)=OsCFM3;Note=Similar to CRS1/YhbY domain containing protein%2C expressed.;Transcript_evidence=AK358981 (DDBJ);ORF_evidence=Q2R1U8 (UniProt);GO=Molecular Function: RNA binding (GO:0003723);InterPro=RNA-binding%2C CRM domain (IPR001890);Oryzabase=23498;TENOR=Os11t0592400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	22529594	22529610	.	-	.	Parent=Os11t0592400-00
Chr11	irgsp1_rep	CDS	22528874	22529593	.	-	0	Parent=Os11t0592400-00
Chr11	irgsp1_rep	CDS	22527453	22527936	.	-	0	Parent=Os11t0592400-00
Chr11	irgsp1_rep	CDS	22527223	22527353	.	-	2	Parent=Os11t0592400-00
Chr11	irgsp1_rep	CDS	22525658	22526005	.	-	0	Parent=Os11t0592400-00
Chr11	irgsp1_rep	CDS	22525124	22525280	.	-	0	Parent=Os11t0592400-00
Chr11	irgsp1_rep	CDS	22524599	22524891	.	-	2	Parent=Os11t0592400-00
Chr11	irgsp1_rep	CDS	22524315	22524374	.	-	0	Parent=Os11t0592400-00
Chr11	irgsp1_rep	CDS	22524145	22524234	.	-	0	Parent=Os11t0592400-00
Chr11	irgsp1_rep	CDS	22523670	22524047	.	-	0	Parent=Os11t0592400-00
Chr11	irgsp1_rep	mRNA	22533907	22537548	.	+	.	ID=Os11t0592500-01;Name=Os11t0592500-01;Locus_id=Os11g0592500;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=AK067078 (DDBJ%2C Best hit);ORF_evidence=Q2R1U7 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013093L16;Expression=AK067078;TENOR=Os11t0592500-01;KEGG=Os11t0592500-01
Chr11	irgsp1_rep	five_prime_UTR	22533907	22534019	.	+	.	Parent=Os11t0592500-01
Chr11	irgsp1_rep	five_prime_UTR	22534095	22534168	.	+	.	Parent=Os11t0592500-01
Chr11	irgsp1_rep	five_prime_UTR	22534262	22534496	.	+	.	Parent=Os11t0592500-01
Chr11	irgsp1_rep	CDS	22534497	22535176	.	+	0	Parent=Os11t0592500-01
Chr11	irgsp1_rep	CDS	22535432	22535783	.	+	1	Parent=Os11t0592500-01
Chr11	irgsp1_rep	three_prime_UTR	22535784	22537548	.	+	.	Parent=Os11t0592500-01
Chr11	irgsp1_rep	mRNA	22533911	22540070	.	+	.	ID=Os11t0592500-02;Name=Os11t0592500-02;Locus_id=Os11g0592500;Note=Conserved hypothetical protein.;Transcript_evidence=AK068168 (DDBJ%2C Best hit);ORF_evidence=B8AVP1 (UniProt);NIAS_FLcDNA=J013129H24;TENOR=Os11t0592500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	22533911	22534019	.	+	.	Parent=Os11t0592500-02
Chr11	irgsp1_rep	five_prime_UTR	22534095	22534168	.	+	.	Parent=Os11t0592500-02
Chr11	irgsp1_rep	five_prime_UTR	22534262	22534271	.	+	.	Parent=Os11t0592500-02
Chr11	irgsp1_rep	CDS	22534272	22534484	.	+	0	Parent=Os11t0592500-02
Chr11	irgsp1_rep	three_prime_UTR	22534485	22535176	.	+	.	Parent=Os11t0592500-02
Chr11	irgsp1_rep	three_prime_UTR	22535432	22538101	.	+	.	Parent=Os11t0592500-02
Chr11	irgsp1_rep	three_prime_UTR	22538197	22538491	.	+	.	Parent=Os11t0592500-02
Chr11	irgsp1_rep	three_prime_UTR	22538574	22538780	.	+	.	Parent=Os11t0592500-02
Chr11	irgsp1_rep	three_prime_UTR	22539603	22540070	.	+	.	Parent=Os11t0592500-02
Chr11	irgsp1_rep	mRNA	22534270	22537142	.	-	.	ID=Os11t0592550-00;Name=Os11t0592550-00;Locus_id=Os11g0592550;Note=Hypothetical protein.;Transcript_evidence=tplb0061j05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0592550-00
Chr11	irgsp1_rep	five_prime_UTR	22536927	22537142	.	-	.	Parent=Os11t0592550-00
Chr11	irgsp1_rep	CDS	22536651	22536926	.	-	0	Parent=Os11t0592550-00
Chr11	irgsp1_rep	three_prime_UTR	22536573	22536650	.	-	.	Parent=Os11t0592550-00
Chr11	irgsp1_rep	three_prime_UTR	22535423	22536516	.	-	.	Parent=Os11t0592550-00
Chr11	irgsp1_rep	three_prime_UTR	22534884	22535162	.	-	.	Parent=Os11t0592550-00
Chr11	irgsp1_rep	three_prime_UTR	22534270	22534827	.	-	.	Parent=Os11t0592550-00
Chr11	irgsp1_rep	mRNA	22550323	22554889	.	+	.	ID=Os11t0592600-01;Name=Os11t0592600-01;Locus_id=Os11g0592600;Note=Targeting for Xklp2 family protein.;Transcript_evidence=AK068548 (DDBJ%2C Best hit);ORF_evidence=D8LAL7 (UniProt);InterPro=Xklp2 targeting protein (IPR009675);NIAS_FLcDNA=J013155D03;Expression=AK068548;TENOR=Os11t0592600-01;KEGG=Os11t0592600-01
Chr11	irgsp1_rep	five_prime_UTR	22550323	22550385	.	+	.	Parent=Os11t0592600-01
Chr11	irgsp1_rep	five_prime_UTR	22552154	22552201	.	+	.	Parent=Os11t0592600-01
Chr11	irgsp1_rep	CDS	22552202	22552801	.	+	0	Parent=Os11t0592600-01
Chr11	irgsp1_rep	CDS	22553046	22553125	.	+	0	Parent=Os11t0592600-01
Chr11	irgsp1_rep	CDS	22553217	22553298	.	+	1	Parent=Os11t0592600-01
Chr11	irgsp1_rep	CDS	22553392	22553463	.	+	0	Parent=Os11t0592600-01
Chr11	irgsp1_rep	CDS	22553954	22554062	.	+	0	Parent=Os11t0592600-01
Chr11	irgsp1_rep	CDS	22554161	22554441	.	+	2	Parent=Os11t0592600-01
Chr11	irgsp1_rep	three_prime_UTR	22554442	22554889	.	+	.	Parent=Os11t0592600-01
Chr11	irgsp1_rep	mRNA	22555534	22560933	.	+	.	ID=Os11t0592700-00;Name=Os11t0592700-00;Locus_id=Os11g0592700;Note=GTP1/OBG domain containing protein.;Transcript_evidence=FP093820 (DDBJ);ORF_evidence=Q2R1U5 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=GTP-binding domain%2C HSR1-related (IPR002917),Small GTP-binding protein domain (IPR005225),GTP1/OBG (IPR006073),GTP-binding protein%2C HflX (IPR016496);TENOR=Os11t0592700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	22555534	22555558	.	+	.	Parent=Os11t0592700-00
Chr11	irgsp1_rep	CDS	22555559	22555945	.	+	0	Parent=Os11t0592700-00
Chr11	irgsp1_rep	CDS	22556139	22556281	.	+	0	Parent=Os11t0592700-00
Chr11	irgsp1_rep	CDS	22557095	22557211	.	+	1	Parent=Os11t0592700-00
Chr11	irgsp1_rep	CDS	22557323	22557437	.	+	1	Parent=Os11t0592700-00
Chr11	irgsp1_rep	CDS	22558191	22558328	.	+	0	Parent=Os11t0592700-00
Chr11	irgsp1_rep	CDS	22558824	22558919	.	+	0	Parent=Os11t0592700-00
Chr11	irgsp1_rep	CDS	22559006	22559119	.	+	0	Parent=Os11t0592700-00
Chr11	irgsp1_rep	CDS	22559399	22559467	.	+	0	Parent=Os11t0592700-00
Chr11	irgsp1_rep	CDS	22559648	22559718	.	+	0	Parent=Os11t0592700-00
Chr11	irgsp1_rep	CDS	22559820	22559913	.	+	1	Parent=Os11t0592700-00
Chr11	irgsp1_rep	CDS	22560237	22560362	.	+	0	Parent=Os11t0592700-00
Chr11	irgsp1_rep	CDS	22560460	22560549	.	+	0	Parent=Os11t0592700-00
Chr11	irgsp1_rep	CDS	22560686	22560784	.	+	0	Parent=Os11t0592700-00
Chr11	irgsp1_rep	three_prime_UTR	22560785	22560933	.	+	.	Parent=Os11t0592700-00
Chr11	irgsp1_rep	mRNA	22561645	22565343	.	-	.	ID=Os11t0592800-01;Name=Os11t0592800-01;Locus_id=Os11g0592800;Oryzabase Gene Name Synonym(s)=CDK5RAP1-like protein;Note=Similar to CDK5RAP1-like protein.;Transcript_evidence=AK066319 (DDBJ%2C Best hit);ORF_evidence=XP_002867018.1 (RefSeq);GO=Biological Process: tRNA modification (GO:0006400),Biological Process: RNA modification (GO:0009451),Biological Process: macromolecule modification (GO:0043412),Cellular Component: cellular_component (GO:0005575),Cellular Component: cytoplasm (GO:0005737),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transferase activity (GO:0016740),Molecular Function: iron-sulfur cluster binding (GO:0051536),Molecular Function: 4 iron%2C 4 sulfur cluster binding (GO:0051539);InterPro=Deoxyribonuclease/rho motif-related TRAM (IPR002792),Methylthiotransferase (IPR005839),tRNA-i(6)A37 modification enzyme MiaB (IPR006463),Elongator protein 3/MiaB/NifB (IPR006638),Radical SAM (IPR007197),Methylthiotransferase%2C N-terminal (IPR013848),Methylthiotransferase%2C conserved site (IPR020612),Radical SAM%2C alpha/beta horseshoe (IPR023404),Methylthiotransferase/B12-binding/radical SAM-type (IPR023970);NIAS_FLcDNA=J013067A17;Oryzabase=21962;Expression=AK066319;TENOR=Os11t0592800-01;KEGG=Os11t0592800-01
Chr11	irgsp1_rep	five_prime_UTR	22565335	22565343	.	-	.	Parent=Os11t0592800-01
Chr11	irgsp1_rep	CDS	22565090	22565334	.	-	0	Parent=Os11t0592800-01
Chr11	irgsp1_rep	CDS	22563265	22564319	.	-	1	Parent=Os11t0592800-01
Chr11	irgsp1_rep	CDS	22561988	22562490	.	-	2	Parent=Os11t0592800-01
Chr11	irgsp1_rep	three_prime_UTR	22561645	22561987	.	-	.	Parent=Os11t0592800-01
Chr11	irgsp1_rep	mRNA	22565069	22565449	.	+	.	ID=Os11t0592850-00;Name=Os11t0592850-00;Locus_id=Os11g0592850;Note=Non-protein coding transcript.;Transcript_evidence=EU950243 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0592850-00
Chr11	irgsp1_rep	exon	22565069	22565449	.	+	.	Parent=Os11t0592850-00
Chr11	irgsp1_rep	mRNA	22566058	22568588	.	-	.	ID=Os11t0592900-01;Name=Os11t0592900-01;Locus_id=Os11g0592900;Note=Thioredoxin domain 2 containing protein.;Transcript_evidence=AK241682 (DDBJ%2C Best hit);ORF_evidence=NP_001068197.2 (RefSeq);GO=Biological Process: cell redox homeostasis (GO:0045454);InterPro=Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766);NIAS_FLcDNA=J065193O08;TENOR=Os11t0592900-01;KEGG=Os11t0592900-01
Chr11	irgsp1_rep	five_prime_UTR	22568509	22568588	.	-	.	Parent=Os11t0592900-01
Chr11	irgsp1_rep	CDS	22568041	22568508	.	-	0	Parent=Os11t0592900-01
Chr11	irgsp1_rep	CDS	22566178	22566351	.	-	0	Parent=Os11t0592900-01
Chr11	irgsp1_rep	three_prime_UTR	22566058	22566177	.	-	.	Parent=Os11t0592900-01
Chr11	irgsp1_rep	mRNA	22569981	22576763	.	-	.	ID=Os11t0593000-01;Name=Os11t0593000-01;Locus_id=Os11g0593000;CGSNL Gene Symbol=NPC3;CGSNL Gene Name=NON-SPECIFIC PHOSPHOLIPASE C3;Oryzabase Gene Symbol Synonym(s)=OsNPC4%2C OsNPC3%2C NPC4;Oryzabase Gene Name Synonym(s)=Non-specific phospholipase C3;Note=Phosphoesterase family protein.;Transcript_evidence=AK243286 (DDBJ%2C Best hit);ORF_evidence=NP_566206.1 (RefSeq);GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Phosphoesterase (IPR007312);NIAS_FLcDNA=J100052F22;Oryzabase=21051;TENOR=Os11t0593000-01;KEGG=Os11t0593000-01
Chr11	irgsp1_rep	five_prime_UTR	22576683	22576763	.	-	.	Parent=Os11t0593000-01
Chr11	irgsp1_rep	CDS	22576060	22576682	.	-	0	Parent=Os11t0593000-01
Chr11	irgsp1_rep	CDS	22570199	22571183	.	-	1	Parent=Os11t0593000-01
Chr11	irgsp1_rep	three_prime_UTR	22569981	22570198	.	-	.	Parent=Os11t0593000-01
Chr11	irgsp1_rep	mRNA	22577889	22579413	.	+	.	ID=Os11t0593100-01;Name=Os11t0593100-01;Locus_id=Os11g0593100;Oryzabase Gene Symbol Synonym(s)=Os_F0718;Note=Protein of unknown function DUF295 family protein.;Transcript_evidence=AK070035 (DDBJ%2C Best hit);ORF_evidence=A2Z307 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174);NIAS_FLcDNA=J023038E14;Oryzabase=17561;Expression=AK070035;TENOR=Os11t0593100-01;KEGG=Os11t0593100-01
Chr11	irgsp1_rep	five_prime_UTR	22577889	22577947	.	+	.	Parent=Os11t0593100-01
Chr11	irgsp1_rep	CDS	22577948	22579339	.	+	0	Parent=Os11t0593100-01
Chr11	irgsp1_rep	three_prime_UTR	22579340	22579413	.	+	.	Parent=Os11t0593100-01
Chr11	irgsp1_rep	mRNA	22604874	22606587	.	+	.	ID=Os11t0593500-01;Name=Os11t0593500-01;Locus_id=Os11g0593500;Oryzabase Gene Symbol Synonym(s)=OsFbox618%2C Os_F0583;Oryzabase Gene Name Synonym(s)=F-box protein 618;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK107550 (DDBJ%2C Best hit);ORF_evidence=Q2R1T7 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-130-A08;Oryzabase=17379;Expression=AK107550;TENOR=Os11t0593500-01;KEGG=Os11t0593500-01
Chr11	irgsp1_rep	five_prime_UTR	22604874	22604956	.	+	.	Parent=Os11t0593500-01
Chr11	irgsp1_rep	CDS	22604957	22606420	.	+	0	Parent=Os11t0593500-01
Chr11	irgsp1_rep	three_prime_UTR	22606421	22606587	.	+	.	Parent=Os11t0593500-01
Chr11	irgsp1_rep	mRNA	22610993	22612520	.	-	.	ID=Os11t0593600-01;Name=Os11t0593600-01;Locus_id=Os11g0593600;Oryzabase Gene Symbol Synonym(s)=OsFbox619%2C Os_F0190%2C OsSTA265;Oryzabase Gene Name Synonym(s)=F-box protein 619;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK071707 (DDBJ%2C Best hit);ORF_evidence=A2XQL9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Protein of unknown function DUF295 (IPR005174),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023113K16;Oryzabase=17380;Expression=AK071707;TENOR=Os11t0593600-01;KEGG=Os11t0593600-01
Chr11	irgsp1_rep	five_prime_UTR	22612503	22612520	.	-	.	Parent=Os11t0593600-01
Chr11	irgsp1_rep	CDS	22611225	22612502	.	-	0	Parent=Os11t0593600-01
Chr11	irgsp1_rep	three_prime_UTR	22610993	22611224	.	-	.	Parent=Os11t0593600-01
Chr11	irgsp1_rep	mRNA	22614877	22616875	.	-	.	ID=Os11t0593700-01;Name=Os11t0593700-01;Locus_id=Os11g0593700;Oryzabase Gene Symbol Synonym(s)=OsFbox620%2C Os_F0358;Oryzabase Gene Name Synonym(s)=F-box protein 620;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK106617 (DDBJ%2C Best hit);ORF_evidence=A2XQL5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Protein of unknown function DUF295 (IPR005174),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-113-A04;Oryzabase=17381;Expression=AK106617;TENOR=Os11t0593700-01;KEGG=Os11t0593700-01
Chr11	irgsp1_rep	five_prime_UTR	22616452	22616875	.	-	.	Parent=Os11t0593700-01
Chr11	irgsp1_rep	CDS	22615180	22616451	.	-	0	Parent=Os11t0593700-01
Chr11	irgsp1_rep	three_prime_UTR	22614877	22615179	.	-	.	Parent=Os11t0593700-01
Chr11	irgsp1_rep	mRNA	22618819	22624351	.	-	.	ID=Os11t0593900-01;Name=Os11t0593900-01;Locus_id=Os11g0593900;Note=Hypothetical conserved gene.;Transcript_evidence=AK241766 (DDBJ%2C Best hit);ORF_evidence=Q2R1T2 (UniProt);NIAS_FLcDNA=J065205E24;TENOR=Os11t0593900-01;KEGG=Os11t0593900-01
Chr11	irgsp1_rep	five_prime_UTR	22624108	22624351	.	-	.	Parent=Os11t0593900-01
Chr11	irgsp1_rep	CDS	22623481	22624107	.	-	0	Parent=Os11t0593900-01
Chr11	irgsp1_rep	three_prime_UTR	22623438	22623480	.	-	.	Parent=Os11t0593900-01
Chr11	irgsp1_rep	three_prime_UTR	22622107	22622199	.	-	.	Parent=Os11t0593900-01
Chr11	irgsp1_rep	three_prime_UTR	22621736	22621996	.	-	.	Parent=Os11t0593900-01
Chr11	irgsp1_rep	three_prime_UTR	22621507	22621635	.	-	.	Parent=Os11t0593900-01
Chr11	irgsp1_rep	three_prime_UTR	22621365	22621412	.	-	.	Parent=Os11t0593900-01
Chr11	irgsp1_rep	three_prime_UTR	22619863	22620132	.	-	.	Parent=Os11t0593900-01
Chr11	irgsp1_rep	three_prime_UTR	22619343	22619408	.	-	.	Parent=Os11t0593900-01
Chr11	irgsp1_rep	three_prime_UTR	22618819	22619249	.	-	.	Parent=Os11t0593900-01
Chr11	irgsp1_rep	mRNA	22625530	22627473	.	+	.	ID=Os11t0594000-01;Name=Os11t0594000-01;Locus_id=Os11g0594000;Note=Sugar/inositol transporter domain containing protein.;Transcript_evidence=AK243302 (DDBJ%2C Best hit);ORF_evidence=Q2R1T1 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J100054J17;TENOR=Os11t0594000-01;KEGG=Os11t0594000-01
Chr11	irgsp1_rep	five_prime_UTR	22625530	22625611	.	+	.	Parent=Os11t0594000-01
Chr11	irgsp1_rep	CDS	22625612	22626094	.	+	0	Parent=Os11t0594000-01
Chr11	irgsp1_rep	CDS	22626202	22627287	.	+	0	Parent=Os11t0594000-01
Chr11	irgsp1_rep	three_prime_UTR	22627288	22627473	.	+	.	Parent=Os11t0594000-01
Chr11	irgsp1_rep	mRNA	22630975	22637777	.	+	.	ID=Os11t0594200-01;Name=Os11t0594200-01;Locus_id=Os11g0594200;Oryzabase Gene Symbol Synonym(s)=OsWD40-189;Note=Similar to Notchless gene homolog.;Transcript_evidence=AK112063 (DDBJ%2C Best hit);ORF_evidence=B6T999 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=G-protein%2C beta subunit (IPR001632),WD40 repeat (IPR001680),Quinonprotein alcohol dehydrogenase-like (IPR011047),NLE (IPR012972),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=001-115-B05;Oryzabase=10870;Expression=AK112063;TENOR=Os11t0594200-01;KEGG=Os11t0594200-01
Chr11	irgsp1_rep	five_prime_UTR	22630975	22631069	.	+	.	Parent=Os11t0594200-01
Chr11	irgsp1_rep	five_prime_UTR	22631204	22631212	.	+	.	Parent=Os11t0594200-01
Chr11	irgsp1_rep	CDS	22631213	22631377	.	+	0	Parent=Os11t0594200-01
Chr11	irgsp1_rep	CDS	22631777	22631858	.	+	0	Parent=Os11t0594200-01
Chr11	irgsp1_rep	CDS	22631974	22632063	.	+	2	Parent=Os11t0594200-01
Chr11	irgsp1_rep	CDS	22632482	22632607	.	+	2	Parent=Os11t0594200-01
Chr11	irgsp1_rep	CDS	22633083	22633210	.	+	2	Parent=Os11t0594200-01
Chr11	irgsp1_rep	CDS	22633521	22633720	.	+	0	Parent=Os11t0594200-01
Chr11	irgsp1_rep	CDS	22634635	22634698	.	+	1	Parent=Os11t0594200-01
Chr11	irgsp1_rep	CDS	22635629	22635739	.	+	0	Parent=Os11t0594200-01
Chr11	irgsp1_rep	CDS	22635839	22635976	.	+	0	Parent=Os11t0594200-01
Chr11	irgsp1_rep	CDS	22636341	22636483	.	+	0	Parent=Os11t0594200-01
Chr11	irgsp1_rep	CDS	22636556	22636610	.	+	1	Parent=Os11t0594200-01
Chr11	irgsp1_rep	CDS	22636956	22637012	.	+	0	Parent=Os11t0594200-01
Chr11	irgsp1_rep	CDS	22637128	22637211	.	+	0	Parent=Os11t0594200-01
Chr11	irgsp1_rep	three_prime_UTR	22637212	22637777	.	+	.	Parent=Os11t0594200-01
Chr11	irgsp1_rep	mRNA	22639343	22641012	.	-	.	ID=Os11t0594400-01;Name=Os11t0594400-01;Locus_id=Os11g0594400;Oryzabase Gene Symbol Synonym(s)=OsFbox621%2C Os_F0621;Oryzabase Gene Name Synonym(s)=F-box protein 621;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK110886 (DDBJ%2C Best hit);ORF_evidence=B8AVE1 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-172-H02;Oryzabase=17382;Expression=AK110886;TENOR=Os11t0594400-01;KEGG=Os11t0594400-01
Chr11	irgsp1_rep	five_prime_UTR	22640964	22641012	.	-	.	Parent=Os11t0594400-01
Chr11	irgsp1_rep	CDS	22639485	22640963	.	-	0	Parent=Os11t0594400-01
Chr11	irgsp1_rep	three_prime_UTR	22639343	22639484	.	-	.	Parent=Os11t0594400-01
Chr11	irgsp1_rep	mRNA	22642566	22643982	.	-	.	ID=Os11t0594500-00;Name=Os11t0594500-00;Locus_id=Os11g0594500;Note=Protein of unknown function DUF295 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R1S8 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174);TENOR=Os11t0594500-00
Chr11	irgsp1_rep	CDS	22643949	22643982	.	-	0	Parent=Os11t0594500-00
Chr11	irgsp1_rep	CDS	22642566	22643833	.	-	2	Parent=Os11t0594500-00
Chr11	irgsp1_rep	mRNA	22645772	22647144	.	-	.	ID=Os11t0594600-00;Name=Os11t0594600-00;Locus_id=Os11g0594600;Oryzabase Gene Symbol Synonym(s)=OsFbox622%2C Os_F0499;Oryzabase Gene Name Synonym(s)=F-box protein 622;Note=Similar to F-box domain containing protein.;Transcript_evidence=EU965506 (DDBJ);ORF_evidence=NP_001176630.1 (RefSeq);InterPro=Protein of unknown function DUF295 (IPR005174);Oryzabase=17383;TENOR=Os11t0594600-00;KEGG=Os11t0594600-00
Chr11	irgsp1_rep	five_prime_UTR	22647025	22647144	.	-	.	Parent=Os11t0594600-00
Chr11	irgsp1_rep	CDS	22645792	22647024	.	-	0	Parent=Os11t0594600-00
Chr11	irgsp1_rep	three_prime_UTR	22645772	22645791	.	-	.	Parent=Os11t0594600-00
Chr11	irgsp1_rep	mRNA	22649728	22650225	.	+	.	ID=Os11t0594700-00;Name=Os11t0594700-00;Locus_id=Os11g0594700;Note=Protein of unknown function DUF538 family protein.;Transcript_evidence=AK372509 (DDBJ);ORF_evidence=NP_001068206.1 (RefSeq);InterPro=Protein of unknown function DUF538 (IPR007493);TENOR=Os11t0594700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	22649728	22649796	.	+	.	Parent=Os11t0594700-00
Chr11	irgsp1_rep	CDS	22649797	22650225	.	+	0	Parent=Os11t0594700-00
Chr11	irgsp1_rep	mRNA	22651496	22652160	.	+	.	ID=Os11t0594800-01;Name=Os11t0594800-01;Locus_id=Os11g0594800;Note=Protein of unknown function DUF538 family protein.;Transcript_evidence=AK240702 (DDBJ%2C Best hit);ORF_evidence=NP_001068207.1 (RefSeq);InterPro=Protein of unknown function DUF538 (IPR007493);NIAS_FLcDNA=J043016C12;TENOR=Os11t0594800-01;KEGG=Os11t0594800-01
Chr11	irgsp1_rep	five_prime_UTR	22651496	22651572	.	+	.	Parent=Os11t0594800-01
Chr11	irgsp1_rep	CDS	22651573	22652001	.	+	0	Parent=Os11t0594800-01
Chr11	irgsp1_rep	three_prime_UTR	22652002	22652160	.	+	.	Parent=Os11t0594800-01
Chr11	irgsp1_rep	mRNA	22653738	22654189	.	-	.	ID=Os11t0594900-00;Name=Os11t0594900-00;Locus_id=Os11g0594900;Oryzabase Gene Symbol Synonym(s)=OsFbox623%2C Os_F0502;Oryzabase Gene Name Synonym(s)=F-box protein 623;Note=Similar to F-box domain containing protein.;Transcript_evidence=CT835634 (DDBJ%2C Best hit);ORF_evidence=Q2R1S4 (UniProt);Oryzabase=17384;TENOR=Os11t0594900-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	22654139	22654189	.	-	0	Parent=Os11t0594900-00
Chr11	irgsp1_rep	three_prime_UTR	22653738	22654138	.	-	.	Parent=Os11t0594900-00
Chr11	irgsp1_rep	mRNA	22657102	22657726	.	+	.	ID=Os11t0595000-00;Name=Os11t0595000-00;Locus_id=Os11g0595000;Note=Protein of unknown function DUF538 family protein.;Transcript_evidence=AK357140 (DDBJ);ORF_evidence=A2XQK7 (UniProt);InterPro=Protein of unknown function DUF538 (IPR007493);TENOR=Os11t0595000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	22657102	22657707	.	+	0	Parent=Os11t0595000-00
Chr11	irgsp1_rep	three_prime_UTR	22657708	22657726	.	+	.	Parent=Os11t0595000-00
Chr11	irgsp1_rep	mRNA	22658454	22660151	.	-	.	ID=Os11t0595100-01;Name=Os11t0595100-01;Locus_id=Os11g0595100;Note=Protein of unknown function DUF295 family protein.;Transcript_evidence=AK101215 (DDBJ%2C Best hit),AK107103 (DDBJ%2C Best hit);ORF_evidence=Q2R1S4 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033031B16,002-122-A06;Expression=AK101215;TENOR=Os11t0595100-01;KEGG=Os11t0595100-01
Chr11	irgsp1_rep	five_prime_UTR	22660051	22660151	.	-	.	Parent=Os11t0595100-01
Chr11	irgsp1_rep	CDS	22660032	22660050	.	-	0	Parent=Os11t0595100-01
Chr11	irgsp1_rep	CDS	22658664	22659871	.	-	2	Parent=Os11t0595100-01
Chr11	irgsp1_rep	three_prime_UTR	22658454	22658663	.	-	.	Parent=Os11t0595100-01
Chr11	irgsp1_rep	mRNA	22660534	22662341	.	+	.	ID=Os11t0595200-01;Name=Os11t0595200-01;Locus_id=Os11g0595200;Note=PAP fibrillin family protein.;Transcript_evidence=AK106159 (DDBJ%2C Best hit),AK071115 (DDBJ%2C Best hit);ORF_evidence=Q5QJA9 (UniProt);GO=Cellular Component: chloroplast (GO:0009507),Molecular Function: structural molecule activity (GO:0005198);InterPro=Plastid lipid-associated protein/fibrillin conserved domain (IPR006843);NIAS_FLcDNA=001-208-A08,J023080K06;TENOR=Os11t0595200-01
Chr11	irgsp1_rep	five_prime_UTR	22660534	22660715	.	+	.	Parent=Os11t0595200-01
Chr11	irgsp1_rep	CDS	22660716	22660943	.	+	0	Parent=Os11t0595200-01
Chr11	irgsp1_rep	CDS	22661026	22661268	.	+	0	Parent=Os11t0595200-01
Chr11	irgsp1_rep	CDS	22661353	22661479	.	+	0	Parent=Os11t0595200-01
Chr11	irgsp1_rep	CDS	22661857	22662071	.	+	2	Parent=Os11t0595200-01
Chr11	irgsp1_rep	three_prime_UTR	22662072	22662341	.	+	.	Parent=Os11t0595200-01
Chr11	irgsp1_rep	mRNA	22664260	22665010	.	-	.	ID=Os11t0595400-01;Name=Os11t0595400-01;Locus_id=Os11g0595400;RAP-DB Gene Symbol Synonym(s)=FON2%2C FON2/FON4%2C FON4;RAP-DB Gene Name Synonym(s)=FLORAL ORGAN NUMBER 2%2C floral organ number 2%2C floral organ number 4;CGSNL Gene Symbol=FON2;CGSNL Gene Name=FLORAL ORGAN NUMBER 2;Oryzabase Gene Symbol Synonym(s)=fon2%2C FON4%2C OsFON4%2C FON2/FON4%2C TG1;Oryzabase Gene Name Synonym(s)=floral organ number2%2C floral organ number 2%2C floral organ number-2%2C floral organ number4%2C floral organ number 4%2C twin-grain1%2C twin-grain 1;Note=Small secreted protein containing CLE domain%2C Regulation of meristem maintenance;Transcript_evidence=AB245090,DQ836359;ORF_evidence=A0MH06;Manual Curation=April 14%2C 2017;Literature_PMID=17056620,17012407;Oryzabase=113;TENOR=Os11t0595400-00;KEGG=Os11t0595400-00
Chr11	irgsp1_rep	five_prime_UTR	22664996	22665010	.	-	.	Parent=Os11t0595400-01
Chr11	irgsp1_rep	CDS	22664914	22664995	.	-	0	Parent=Os11t0595400-01
Chr11	irgsp1_rep	CDS	22664708	22664775	.	-	2	Parent=Os11t0595400-01
Chr11	irgsp1_rep	CDS	22664352	22664570	.	-	0	Parent=Os11t0595400-01
Chr11	irgsp1_rep	three_prime_UTR	22664260	22664351	.	-	.	Parent=Os11t0595400-01
Chr11	irgsp1_rep	mRNA	22676137	22682472	.	-	.	ID=Os11t0596000-00;Name=Os11t0596000-00;Locus_id=Os11g0596000;Note=Hypothetical conserved gene.;Transcript_evidence=AK288199 (DDBJ%2C Secondary hit);ORF_evidence=Q2R1R7 (UniProt);TENOR=Os11t0596000-00;KEGG=Os11t0596000-00
Chr11	irgsp1_rep	five_prime_UTR	22677528	22682472	.	-	.	Parent=Os11t0596000-00
Chr11	irgsp1_rep	CDS	22677282	22677527	.	-	0	Parent=Os11t0596000-00
Chr11	irgsp1_rep	three_prime_UTR	22676137	22677281	.	-	.	Parent=Os11t0596000-00
Chr11	irgsp1_rep	mRNA	22698542	22699330	.	+	.	ID=Os11t0596200-00;Name=Os11t0596200-00;Locus_id=Os11g0596200;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R1R4 (UniProt);TENOR=Os11t0596200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	22698542	22699330	.	+	0	Parent=Os11t0596200-00
Chr11	irgsp1_rep	mRNA	22699434	22700917	.	+	.	ID=Os11t0596250-01;Name=Os11t0596250-01;Locus_id=Os11g0596250;Note=Conserved hypothetical protein.;Transcript_evidence=AK243140 (DDBJ%2C Best hit);ORF_evidence=NP_001176631.1 (RefSeq);NIAS_FLcDNA=J100031I02;TENOR=Os11t0596250-01;KEGG=Os11t0596250-01
Chr11	irgsp1_rep	five_prime_UTR	22699434	22700501	.	+	.	Parent=Os11t0596250-01
Chr11	irgsp1_rep	CDS	22700502	22700789	.	+	0	Parent=Os11t0596250-01
Chr11	irgsp1_rep	three_prime_UTR	22700790	22700917	.	+	.	Parent=Os11t0596250-01
Chr11	irgsp1_rep	mRNA	22763793	22767680	.	+	.	ID=Os11t0597400-00;Name=Os11t0597400-00;Locus_id=Os11g0597400;Note=Similar to Leucine Rich Repeat family protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R245 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os11t0597400-00;KEGG=Os11t0597400-00
Chr11	irgsp1_rep	CDS	22763793	22767680	.	+	0	Parent=Os11t0597400-00
Chr11	irgsp1_rep	mRNA	22768985	22771759	.	-	.	ID=Os11t0597500-00;Name=Os11t0597500-00;Locus_id=Os11g0597500;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001176633.1 (RefSeq);TENOR=Os11t0597500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	22771450	22771759	.	-	0	Parent=Os11t0597500-00
Chr11	irgsp1_rep	CDS	22771219	22771394	.	-	2	Parent=Os11t0597500-00
Chr11	irgsp1_rep	CDS	22769199	22769447	.	-	0	Parent=Os11t0597500-00
Chr11	irgsp1_rep	CDS	22768985	22769113	.	-	0	Parent=Os11t0597500-00
Chr11	irgsp1_rep	mRNA	22799288	22808829	.	-	.	ID=Os11t0597601-01;Name=Os11t0597601-01;Locus_id=Os11g0597601;Note=Hypothetical conserved gene.;Transcript_evidence=AK242882 (DDBJ%2C Best hit);ORF_evidence=NP_001176633.1 (RefSeq);NIAS_FLcDNA=J090078N22;TENOR=Os11t0597601-01;KEGG=Os11t0597601-01
Chr11	irgsp1_rep	CDS	22808341	22808829	.	-	0	Parent=Os11t0597601-01
Chr11	irgsp1_rep	CDS	22802894	22803018	.	-	0	Parent=Os11t0597601-01
Chr11	irgsp1_rep	CDS	22799764	22799926	.	-	1	Parent=Os11t0597601-01
Chr11	irgsp1_rep	three_prime_UTR	22799288	22799763	.	-	.	Parent=Os11t0597601-01
Chr11	irgsp1_rep	mRNA	22799341	22802116	.	+	.	ID=Os11t0597700-01;Name=Os11t0597700-01;Locus_id=Os11g0597700;Note=Similar to Resistant protein.;Transcript_evidence=AK067694 (DDBJ%2C Best hit);ORF_evidence=E3WF09 (UniProt);NIAS_FLcDNA=J013119B07;TENOR=Os11t0597700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	22799341	22799733	.	+	.	Parent=Os11t0597700-01
Chr11	irgsp1_rep	CDS	22799734	22800360	.	+	0	Parent=Os11t0597700-01
Chr11	irgsp1_rep	three_prime_UTR	22800361	22802116	.	+	.	Parent=Os11t0597700-01
Chr11	irgsp1_rep	mRNA	22816503	22817793	.	-	.	ID=Os11t0598000-00;Name=Os11t0598000-00;Locus_id=Os11g0598000;Oryzabase Gene Symbol Synonym(s)=OsFbox624%2C Os_F0226;Oryzabase Gene Name Synonym(s)=F-box protein 624;Note=Similar to F-box domain containing protein%2C expressed.;Transcript_evidence=AK106009 (DDBJ%2C Secondary hit);ORF_evidence=Q2R244 (UniProt);Oryzabase=17385;Expression=AK106009;TENOR=Os11t0598000-00;KEGG=Os11t0598000-00
Chr11	irgsp1_rep	CDS	22817341	22817793	.	-	0	Parent=Os11t0598000-00
Chr11	irgsp1_rep	three_prime_UTR	22816503	22817340	.	-	.	Parent=Os11t0598000-00
Chr11	irgsp1_rep	mRNA	22821907	22825232	.	+	.	ID=Os11t0598200-01;Name=Os11t0598200-01;Locus_id=Os11g0598200;Note=Hypothetical protein.;Transcript_evidence=AK240717 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J043024B01;TENOR=Os11t0598200-01;KEGG=Os11t0598200-01
Chr11	irgsp1_rep	five_prime_UTR	22821907	22823769	.	+	.	Parent=Os11t0598200-01
Chr11	irgsp1_rep	CDS	22823770	22824237	.	+	0	Parent=Os11t0598200-01
Chr11	irgsp1_rep	three_prime_UTR	22824238	22825232	.	+	.	Parent=Os11t0598200-01
Chr11	irgsp1_rep	mRNA	22822490	22827551	.	-	.	ID=Os11t0598300-00;Name=Os11t0598300-00;Locus_id=Os11g0598300;Note=NB-ARC domain containing protein.;Transcript_evidence=tplb0004n13 (Wheat FLcDNA);ORF_evidence=Q2R245 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os11t0598300-00;KEGG=Os11t0598300-00
Chr11	irgsp1_rep	CDS	22823283	22827551	.	-	0	Parent=Os11t0598300-00
Chr11	irgsp1_rep	three_prime_UTR	22823085	22823282	.	-	.	Parent=Os11t0598300-00
Chr11	irgsp1_rep	three_prime_UTR	22822490	22822633	.	-	.	Parent=Os11t0598300-00
Chr11	irgsp1_rep	mRNA	22862447	22866319	.	+	.	ID=Os11t0598500-00;Name=Os11t0598500-00;Locus_id=Os11g0598500;Note=NB-ARC domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R1N9 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os11t0598500-00;KEGG=Os11t0598500-00
Chr11	irgsp1_rep	CDS	22862447	22866319	.	+	0	Parent=Os11t0598500-00
Chr11	irgsp1_rep	mRNA	22872253	22873006	.	+	.	ID=Os11t0598700-00;Name=Os11t0598700-00;Locus_id=Os11g0598700;Note=Similar to predicted protein.;Transcript_evidence=AK241726 (DDBJ%2C Secondary hit);ORF_evidence=NP_191274.1 (RefSeq);GO=Biological Process: pseudouridine synthesis (GO:0001522),Biological Process: RNA processing (GO:0006396),Biological Process: RNA modification (GO:0009451),Molecular Function: RNA binding (GO:0003723),Molecular Function: pseudouridine synthase activity (GO:0009982);InterPro=Pseudouridine synthase II (IPR002501),Pseudouridine synthase-related (IPR004802),Pseudouridine synthase%2C catalytic domain (IPR020103);TENOR=Os11t0598700-00;KEGG=Os11t0598700-00 (EC:5.4.99.-)
Chr11	irgsp1_rep	CDS	22872253	22872508	.	+	0	Parent=Os11t0598700-00
Chr11	irgsp1_rep	CDS	22872520	22872872	.	+	2	Parent=Os11t0598700-00
Chr11	irgsp1_rep	three_prime_UTR	22872873	22873006	.	+	.	Parent=Os11t0598700-00
Chr11	irgsp1_rep	mRNA	22876403	22884442	.	+	.	ID=Os11t0598800-01;Name=Os11t0598800-01;Locus_id=Os11g0598800;CGSNL Gene Symbol=UCH;CGSNL Gene Name=UBIQUITIN C-TERMINAL HYDROLASE;Oryzabase Gene Symbol Synonym(s)=OsUCH;Oryzabase Gene Name Synonym(s)=ubiquitin C-terminal hydrolase;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK101994 (DDBJ%2C Best hit);ORF_evidence=Q2R1N4 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Domain of unknown function DUF629 (IPR006865),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026);NIAS_FLcDNA=J033079I07;Oryzabase=22900;Expression=AK101994;TENOR=Os11t0598800-01;KEGG=Os11t0598800-01
Chr11	irgsp1_rep	five_prime_UTR	22876403	22876664	.	+	.	Parent=Os11t0598800-01
Chr11	irgsp1_rep	CDS	22876665	22878041	.	+	0	Parent=Os11t0598800-01
Chr11	irgsp1_rep	CDS	22878144	22878269	.	+	0	Parent=Os11t0598800-01
Chr11	irgsp1_rep	CDS	22878354	22878458	.	+	0	Parent=Os11t0598800-01
Chr11	irgsp1_rep	CDS	22878560	22878694	.	+	0	Parent=Os11t0598800-01
Chr11	irgsp1_rep	CDS	22878833	22878882	.	+	0	Parent=Os11t0598800-01
Chr11	irgsp1_rep	CDS	22880522	22880580	.	+	1	Parent=Os11t0598800-01
Chr11	irgsp1_rep	CDS	22880854	22880963	.	+	2	Parent=Os11t0598800-01
Chr11	irgsp1_rep	CDS	22881046	22881267	.	+	0	Parent=Os11t0598800-01
Chr11	irgsp1_rep	CDS	22881976	22882209	.	+	0	Parent=Os11t0598800-01
Chr11	irgsp1_rep	CDS	22882313	22882412	.	+	0	Parent=Os11t0598800-01
Chr11	irgsp1_rep	CDS	22882734	22882864	.	+	2	Parent=Os11t0598800-01
Chr11	irgsp1_rep	CDS	22883869	22883953	.	+	0	Parent=Os11t0598800-01
Chr11	irgsp1_rep	CDS	22884039	22884163	.	+	2	Parent=Os11t0598800-01
Chr11	irgsp1_rep	three_prime_UTR	22884164	22884442	.	+	.	Parent=Os11t0598800-01
Chr11	irgsp1_rep	mRNA	22886676	22886759	.	-	.	ID=Os11t0598850-00;Name=Os11t0598850-00;Locus_id=Os11g0598850;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0598850-00
Chr11	irgsp1_rep	exon	22886676	22886759	.	-	.	Parent=Os11t0598850-00
Chr11	irgsp1_rep	mRNA	22887317	22889471	.	+	.	ID=Os11t0598900-00;Name=Os11t0598900-00;Locus_id=Os11g0598900;Note=Domain of unknown function DUF629 domain containing protein.;Transcript_evidence=EU974990 (DDBJ);ORF_evidence=NP_001068218.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Domain of unknown function DUF629 (IPR006865),Tetratricopeptide-like helical (IPR011990);TENOR=Os11t0598900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	22887317	22887401	.	+	.	Parent=Os11t0598900-00
Chr11	irgsp1_rep	CDS	22887402	22887917	.	+	0	Parent=Os11t0598900-00
Chr11	irgsp1_rep	CDS	22887978	22888982	.	+	0	Parent=Os11t0598900-00
Chr11	irgsp1_rep	CDS	22889065	22889172	.	+	0	Parent=Os11t0598900-00
Chr11	irgsp1_rep	CDS	22889265	22889471	.	+	0	Parent=Os11t0598900-00
Chr11	irgsp1_rep	mRNA	22900684	22908302	.	+	.	ID=Os11t0599000-00;Name=Os11t0599000-00;Locus_id=Os11g0599000;Note=Domain of unknown function DUF629 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2ZFY2 (UniProt);InterPro=Domain of unknown function DUF629 (IPR006865);TENOR=Os11t0599000-00
Chr11	irgsp1_rep	CDS	22900684	22902237	.	+	0	Parent=Os11t0599000-00
Chr11	irgsp1_rep	CDS	22902366	22902455	.	+	0	Parent=Os11t0599000-00
Chr11	irgsp1_rep	CDS	22902559	22902738	.	+	0	Parent=Os11t0599000-00
Chr11	irgsp1_rep	CDS	22902846	22902895	.	+	0	Parent=Os11t0599000-00
Chr11	irgsp1_rep	CDS	22903478	22903599	.	+	1	Parent=Os11t0599000-00
Chr11	irgsp1_rep	CDS	22905042	22905154	.	+	2	Parent=Os11t0599000-00
Chr11	irgsp1_rep	CDS	22906187	22906300	.	+	0	Parent=Os11t0599000-00
Chr11	irgsp1_rep	CDS	22906564	22906693	.	+	0	Parent=Os11t0599000-00
Chr11	irgsp1_rep	CDS	22907045	22907178	.	+	2	Parent=Os11t0599000-00
Chr11	irgsp1_rep	CDS	22908032	22908112	.	+	0	Parent=Os11t0599000-00
Chr11	irgsp1_rep	CDS	22908216	22908302	.	+	0	Parent=Os11t0599000-00
Chr11	irgsp1_rep	mRNA	22916768	22922200	.	-	.	ID=Os11t0599100-01;Name=Os11t0599100-01;Locus_id=Os11g0599100;Note=Conserved hypothetical protein.;Transcript_evidence=AK288952 (DDBJ%2C Best hit);ORF_evidence=B8BLB8 (UniProt);NIAS_FLcDNA=J090083K12;TENOR=Os11t0599100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	22917003	22922200	.	-	.	Parent=Os11t0599100-01
Chr11	irgsp1_rep	CDS	22916768	22917002	.	-	0	Parent=Os11t0599100-01
Chr11	irgsp1_rep	mRNA	22910686	22917067	.	+	.	ID=Os11t0599101-01;Name=Os11t0599101-01;Locus_id=Os11g0599101;Note=Domain of unknown function DUF629 domain containing protein.;Transcript_evidence=AK287852 (DDBJ%2C Best hit);ORF_evidence=Q2R1N1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Domain of unknown function DUF629 (IPR006865),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J065196A15;TENOR=Os11t0599101-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	22910686	22910783	.	+	.	Parent=Os11t0599101-01
Chr11	irgsp1_rep	CDS	22910784	22912247	.	+	0	Parent=Os11t0599101-01
Chr11	irgsp1_rep	CDS	22912351	22912458	.	+	0	Parent=Os11t0599101-01
Chr11	irgsp1_rep	CDS	22912548	22912713	.	+	0	Parent=Os11t0599101-01
Chr11	irgsp1_rep	CDS	22913417	22913514	.	+	2	Parent=Os11t0599101-01
Chr11	irgsp1_rep	CDS	22913591	22913800	.	+	0	Parent=Os11t0599101-01
Chr11	irgsp1_rep	CDS	22914510	22914773	.	+	0	Parent=Os11t0599101-01
Chr11	irgsp1_rep	CDS	22914854	22914983	.	+	0	Parent=Os11t0599101-01
Chr11	irgsp1_rep	CDS	22915200	22915333	.	+	2	Parent=Os11t0599101-01
Chr11	irgsp1_rep	CDS	22916314	22916394	.	+	0	Parent=Os11t0599101-01
Chr11	irgsp1_rep	CDS	22916833	22916919	.	+	0	Parent=Os11t0599101-01
Chr11	irgsp1_rep	three_prime_UTR	22916920	22917067	.	+	.	Parent=Os11t0599101-01
Chr11	irgsp1_rep	mRNA	22926178	22928035	.	-	.	ID=Os11t0599200-01;Name=Os11t0599200-01;Locus_id=Os11g0599200;Oryzabase Gene Name Synonym(s)=UDP-glycosyltransferase 72B3;Note=UDP-glucuronosyl/UDP-glucosyltransferase family protein.;Transcript_evidence=AK100744 (DDBJ%2C Best hit);ORF_evidence=B6SSE4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=J023118G04;Oryzabase=23277;Expression=AK100744;TENOR=Os11t0599200-01;KEGG=Os11t0599200-01 (EC:2.4.1.218)
Chr11	irgsp1_rep	five_prime_UTR	22927899	22928035	.	-	.	Parent=Os11t0599200-01
Chr11	irgsp1_rep	CDS	22926426	22927898	.	-	0	Parent=Os11t0599200-01
Chr11	irgsp1_rep	three_prime_UTR	22926178	22926425	.	-	.	Parent=Os11t0599200-01
Chr11	irgsp1_rep	mRNA	22943173	22944537	.	-	.	ID=Os11t0599400-00;Name=Os11t0599400-00;Locus_id=Os11g0599400;CGSNL Gene Symbol=MSL39;CGSNL Gene Name=MYB/SANT-LIKE 39;Oryzabase Gene Symbol Synonym(s)=OsMSL39;Oryzabase Gene Name Synonym(s)=Myb/SANT-LIKE 39;Note=Hypothetical conserved gene.;Transcript_evidence=EU969963 (DDBJ);ORF_evidence=Q2R1M9 (UniProt);InterPro=Myb/SANT-like domain (IPR024752);Oryzabase=22943;TENOR=Os11t0599400-00;KEGG=Os11t0599400-00
Chr11	irgsp1_rep	five_prime_UTR	22944218	22944537	.	-	.	Parent=Os11t0599400-00
Chr11	irgsp1_rep	five_prime_UTR	22944105	22944105	.	-	.	Parent=Os11t0599400-00
Chr11	irgsp1_rep	CDS	22943796	22944104	.	-	0	Parent=Os11t0599400-00
Chr11	irgsp1_rep	CDS	22943409	22943711	.	-	0	Parent=Os11t0599400-00
Chr11	irgsp1_rep	three_prime_UTR	22943173	22943408	.	-	.	Parent=Os11t0599400-00
Chr11	irgsp1_rep	mRNA	22948353	22954688	.	-	.	ID=Os11t0599466-01;Name=Os11t0599466-01;Locus_id=Os11g0599466;Note=Hypothetical gene.;Transcript_evidence=AK288345 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090023L06;TENOR=Os11t0599466-01;KEGG=Os11t0599466-01
Chr11	irgsp1_rep	five_prime_UTR	22950255	22954688	.	-	.	Parent=Os11t0599466-01
Chr11	irgsp1_rep	CDS	22949535	22950254	.	-	0	Parent=Os11t0599466-01
Chr11	irgsp1_rep	three_prime_UTR	22948353	22949534	.	-	.	Parent=Os11t0599466-01
Chr11	irgsp1_rep	mRNA	22949431	22954549	.	+	.	ID=Os11t0599500-00;Name=Os11t0599500-00;Locus_id=Os11g0599500;Oryzabase Gene Symbol Synonym(s)=OsRH52C;Oryzabase Gene Name Synonym(s)=RNA helicase 52C;Note=Similar to RNA helicase (Fragment).;Transcript_evidence=BT062251 (DDBJ);ORF_evidence=Q75HJ0 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);Oryzabase=19160;TENOR=Os11t0599500-00;KEGG=Os11t0599500-00 (EC:3.6.4.13)
Chr11	irgsp1_rep	CDS	22949431	22950180	.	+	0	Parent=Os11t0599500-00
Chr11	irgsp1_rep	CDS	22950296	22950379	.	+	0	Parent=Os11t0599500-00
Chr11	irgsp1_rep	CDS	22951097	22951339	.	+	0	Parent=Os11t0599500-00
Chr11	irgsp1_rep	CDS	22952570	22952737	.	+	0	Parent=Os11t0599500-00
Chr11	irgsp1_rep	CDS	22952930	22953043	.	+	0	Parent=Os11t0599500-00
Chr11	irgsp1_rep	CDS	22953413	22953925	.	+	0	Parent=Os11t0599500-00
Chr11	irgsp1_rep	three_prime_UTR	22953926	22954549	.	+	.	Parent=Os11t0599500-00
Chr11	irgsp1_rep	mRNA	23053079	23053500	.	-	.	ID=Os11t0600301-01;Name=Os11t0600301-01;Locus_id=Os11g0600301;Note=Hypothetical gene.;Transcript_evidence=AK241896 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J075013J12;TENOR=Os11t0600301-01;KEGG=Os11t0600301-01
Chr11	irgsp1_rep	five_prime_UTR	23053435	23053500	.	-	.	Parent=Os11t0600301-01
Chr11	irgsp1_rep	CDS	23053201	23053434	.	-	0	Parent=Os11t0600301-01
Chr11	irgsp1_rep	three_prime_UTR	23053079	23053200	.	-	.	Parent=Os11t0600301-01
Chr11	irgsp1_rep	mRNA	23060525	23061100	.	-	.	ID=Os11t0600500-00;Name=Os11t0600500-00;Locus_id=Os11g0600500;Note=Calcium-binding EF-hand domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001068223.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249);TENOR=Os11t0600500-00
Chr11	irgsp1_rep	CDS	23060525	23061100	.	-	0	Parent=Os11t0600500-00
Chr11	irgsp1_rep	mRNA	23063476	23064575	.	+	.	ID=Os11t0600600-01;Name=Os11t0600600-01;Locus_id=Os11g0600600;Note=Hypothetical conserved gene.;Transcript_evidence=AK110531 (DDBJ%2C Best hit);ORF_evidence=A2ZFW0 (UniProt);NIAS_FLcDNA=002-168-A04;Expression=AK110531;TENOR=Os11t0600600-01;KEGG=Os11t0600600-01
Chr11	irgsp1_rep	five_prime_UTR	23063476	23064085	.	+	.	Parent=Os11t0600600-01
Chr11	irgsp1_rep	CDS	23064086	23064322	.	+	0	Parent=Os11t0600600-01
Chr11	irgsp1_rep	three_prime_UTR	23064323	23064575	.	+	.	Parent=Os11t0600600-01
Chr11	irgsp1_rep	mRNA	23065978	23072515	.	+	.	ID=Os11t0600700-01;Name=Os11t0600700-01;Locus_id=Os11g0600700;Note=Similar to RING domain protein.;Transcript_evidence=AK071098 (DDBJ%2C Best hit);ORF_evidence=B6TQI1 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-CH-type (IPR011016),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Protein of unknown function DUF3675 (IPR022143);NIAS_FLcDNA=J023081C09;Expression=AK071098;TENOR=Os11t0600700-01;KEGG=Os11t0600700-01
Chr11	irgsp1_rep	five_prime_UTR	23065978	23066217	.	+	.	Parent=Os11t0600700-01
Chr11	irgsp1_rep	five_prime_UTR	23066681	23066730	.	+	.	Parent=Os11t0600700-01
Chr11	irgsp1_rep	CDS	23066731	23066976	.	+	0	Parent=Os11t0600700-01
Chr11	irgsp1_rep	CDS	23068901	23068972	.	+	0	Parent=Os11t0600700-01
Chr11	irgsp1_rep	CDS	23069764	23069828	.	+	0	Parent=Os11t0600700-01
Chr11	irgsp1_rep	CDS	23069953	23070085	.	+	1	Parent=Os11t0600700-01
Chr11	irgsp1_rep	CDS	23070432	23070512	.	+	0	Parent=Os11t0600700-01
Chr11	irgsp1_rep	CDS	23070634	23070723	.	+	0	Parent=Os11t0600700-01
Chr11	irgsp1_rep	CDS	23071989	23072138	.	+	0	Parent=Os11t0600700-01
Chr11	irgsp1_rep	three_prime_UTR	23072139	23072515	.	+	.	Parent=Os11t0600700-01
Chr11	irgsp1_rep	mRNA	23066080	23072503	.	+	.	ID=Os11t0600700-02;Name=Os11t0600700-02;Locus_id=Os11g0600700;Note=Similar to RING domain protein.;Transcript_evidence=AK061258 (DDBJ%2C Best hit);ORF_evidence=B6TQI1 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-CH-type (IPR011016),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Protein of unknown function DUF3675 (IPR022143);NIAS_FLcDNA=006-212-B06;Expression=AK061258;TENOR=Os11t0600700-02;KEGG=Os11t0600700-02
Chr11	irgsp1_rep	five_prime_UTR	23066080	23066217	.	+	.	Parent=Os11t0600700-02
Chr11	irgsp1_rep	five_prime_UTR	23066681	23066730	.	+	.	Parent=Os11t0600700-02
Chr11	irgsp1_rep	CDS	23066731	23066976	.	+	0	Parent=Os11t0600700-02
Chr11	irgsp1_rep	CDS	23068901	23068972	.	+	0	Parent=Os11t0600700-02
Chr11	irgsp1_rep	CDS	23069764	23069828	.	+	0	Parent=Os11t0600700-02
Chr11	irgsp1_rep	CDS	23069953	23070085	.	+	1	Parent=Os11t0600700-02
Chr11	irgsp1_rep	CDS	23070432	23070512	.	+	0	Parent=Os11t0600700-02
Chr11	irgsp1_rep	CDS	23070634	23070723	.	+	0	Parent=Os11t0600700-02
Chr11	irgsp1_rep	CDS	23071989	23072138	.	+	0	Parent=Os11t0600700-02
Chr11	irgsp1_rep	three_prime_UTR	23072139	23072503	.	+	.	Parent=Os11t0600700-02
Chr11	irgsp1_rep	mRNA	23079578	23081682	.	+	.	ID=Os11t0600900-01;Name=Os11t0600900-01;Locus_id=Os11g0600900;Note=Similar to Mannose-6-phosphate isomerase (ManA).;Transcript_evidence=AK110698 (DDBJ%2C Best hit);ORF_evidence=Q2R1L4 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: mannose-6-phosphate isomerase activity (GO:0004476),Molecular Function: zinc ion binding (GO:0008270);InterPro=Mannose-6-phosphate isomerase%2C type I (IPR001250),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),Mannose-6-phosphate isomerase (IPR016305),Phosphomannose isomerase%2C type I%2C conserved site (IPR018050);NIAS_FLcDNA=002-170-B05;Expression=AK110698;TENOR=Os11t0600900-01;KEGG=Os11t0600900-01 (EC:5.3.1.8)
Chr11	irgsp1_rep	CDS	23079578	23079673	.	+	0	Parent=Os11t0600900-01
Chr11	irgsp1_rep	CDS	23080345	23080611	.	+	0	Parent=Os11t0600900-01
Chr11	irgsp1_rep	CDS	23081037	23081357	.	+	0	Parent=Os11t0600900-01
Chr11	irgsp1_rep	three_prime_UTR	23081358	23081682	.	+	.	Parent=Os11t0600900-01
Chr11	irgsp1_rep	mRNA	23119925	23123136	.	-	.	ID=Os11t0601300-00;Name=Os11t0601300-00;Locus_id=Os11g0601300;Note=Hypothetical protein.;Transcript_evidence=tplb0023l14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0601300-00
Chr11	irgsp1_rep	five_prime_UTR	23122885	23123136	.	-	.	Parent=Os11t0601300-00
Chr11	irgsp1_rep	five_prime_UTR	23122605	23122793	.	-	.	Parent=Os11t0601300-00
Chr11	irgsp1_rep	five_prime_UTR	23122314	23122500	.	-	.	Parent=Os11t0601300-00
Chr11	irgsp1_rep	five_prime_UTR	23121821	23122220	.	-	.	Parent=Os11t0601300-00
Chr11	irgsp1_rep	five_prime_UTR	23120571	23120920	.	-	.	Parent=Os11t0601300-00
Chr11	irgsp1_rep	five_prime_UTR	23120474	23120515	.	-	.	Parent=Os11t0601300-00
Chr11	irgsp1_rep	CDS	23120063	23120473	.	-	0	Parent=Os11t0601300-00
Chr11	irgsp1_rep	three_prime_UTR	23119925	23120062	.	-	.	Parent=Os11t0601300-00
Chr11	irgsp1_rep	mRNA	23119941	23123201	.	+	.	ID=Os11t0601500-00;Name=Os11t0601500-00;Locus_id=Os11g0601500;Oryzabase Gene Symbol Synonym(s)=OsEnS-147;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 147;Note=Similar to Protein kinase domain containing protein.;Transcript_evidence=AK363159 (DDBJ);ORF_evidence=Q2R1L0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Gnk2-homologous domain (IPR002902),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=18430;TENOR=Os11t0601500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	23119941	23120964	.	+	0	Parent=Os11t0601500-00
Chr11	irgsp1_rep	CDS	23121486	23121664	.	+	2	Parent=Os11t0601500-00
Chr11	irgsp1_rep	CDS	23122001	23122214	.	+	0	Parent=Os11t0601500-00
Chr11	irgsp1_rep	CDS	23122308	23122545	.	+	2	Parent=Os11t0601500-00
Chr11	irgsp1_rep	CDS	23122652	23122802	.	+	1	Parent=Os11t0601500-00
Chr11	irgsp1_rep	CDS	23122891	23122914	.	+	0	Parent=Os11t0601500-00
Chr11	irgsp1_rep	three_prime_UTR	23122915	23123201	.	+	.	Parent=Os11t0601500-00
Chr11	irgsp1_rep	mRNA	23128535	23132781	.	+	.	ID=Os11t0601600-01;Name=Os11t0601600-01;Locus_id=Os11g0601600;Oryzabase Gene Name Synonym(s)=Protein of unknown function DUF248%2C methyltransferase putative family protein;Note=Protein of unknown function DUF248%2C methyltransferase putative family protein.;Transcript_evidence=AK121243 (DDBJ%2C Best hit);ORF_evidence=NP_001152056.1 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Protein of unknown function DUF248%2C methyltransferase putative (IPR004159);NIAS_FLcDNA=J023099B06;Oryzabase=22021;Expression=AK121243;TENOR=Os11t0601600-01;KEGG=Os11t0601600-01
Chr11	irgsp1_rep	five_prime_UTR	23128535	23128693	.	+	.	Parent=Os11t0601600-01
Chr11	irgsp1_rep	five_prime_UTR	23128782	23128796	.	+	.	Parent=Os11t0601600-01
Chr11	irgsp1_rep	CDS	23128797	23129447	.	+	0	Parent=Os11t0601600-01
Chr11	irgsp1_rep	CDS	23129550	23129760	.	+	0	Parent=Os11t0601600-01
Chr11	irgsp1_rep	CDS	23130748	23131423	.	+	2	Parent=Os11t0601600-01
Chr11	irgsp1_rep	CDS	23131774	23131851	.	+	1	Parent=Os11t0601600-01
Chr11	irgsp1_rep	CDS	23132266	23132608	.	+	1	Parent=Os11t0601600-01
Chr11	irgsp1_rep	three_prime_UTR	23132609	23132781	.	+	.	Parent=Os11t0601600-01
Chr11	irgsp1_rep	mRNA	23128793	23132484	.	-	.	ID=Os11t0601650-00;Name=Os11t0601650-00;Locus_id=Os11g0601650;Note=Hypothetical protein.;Transcript_evidence=tplb0038j22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0601650-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	23132266	23132484	.	-	.	Parent=Os11t0601650-00
Chr11	irgsp1_rep	five_prime_UTR	23131759	23131851	.	-	.	Parent=Os11t0601650-00
Chr11	irgsp1_rep	five_prime_UTR	23130761	23131411	.	-	.	Parent=Os11t0601650-00
Chr11	irgsp1_rep	CDS	23130759	23130760	.	-	0	Parent=Os11t0601650-00
Chr11	irgsp1_rep	CDS	23129550	23129772	.	-	1	Parent=Os11t0601650-00
Chr11	irgsp1_rep	CDS	23128793	23129447	.	-	0	Parent=Os11t0601650-00
Chr11	irgsp1_rep	mRNA	23132812	23137537	.	-	.	ID=Os11t0601700-01;Name=Os11t0601700-01;Locus_id=Os11g0601700;CGSNL Gene Symbol=BHLH61;CGSNL Gene Name=BASIC HELIX-LOOP-HELIX PROTEIN 61;Oryzabase Gene Symbol Synonym(s)=OsbHLH061%2C OsbHLH61%2C bHLH061%2C bHLH61;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 061;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=AK068017 (DDBJ%2C Best hit);ORF_evidence=B8BLB2 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J013132D22;Oryzabase=15351;Expression=AK068017;TENOR=Os11t0601700-01;KEGG=Os11t0601700-01
Chr11	irgsp1_rep	five_prime_UTR	23137318	23137537	.	-	.	Parent=Os11t0601700-01
Chr11	irgsp1_rep	CDS	23137304	23137317	.	-	0	Parent=Os11t0601700-01
Chr11	irgsp1_rep	CDS	23136834	23136923	.	-	1	Parent=Os11t0601700-01
Chr11	irgsp1_rep	CDS	23135275	23135390	.	-	1	Parent=Os11t0601700-01
Chr11	irgsp1_rep	CDS	23134011	23134138	.	-	2	Parent=Os11t0601700-01
Chr11	irgsp1_rep	CDS	23133237	23133725	.	-	0	Parent=Os11t0601700-01
Chr11	irgsp1_rep	three_prime_UTR	23132812	23133236	.	-	.	Parent=Os11t0601700-01
Chr11	irgsp1_rep	mRNA	23142168	23145064	.	+	.	ID=Os11t0601950-01;Name=Os11t0601950-01;Locus_id=Os11g0601950;Note=Similar to cDNA clone:002-114-B06%2C full insert sequence.;Transcript_evidence=AK240731 (DDBJ%2C Best hit);ORF_evidence=B7EZJ6 (UniProt);NIAS_FLcDNA=J043031D14;TENOR=Os11t0601950-01
Chr11	irgsp1_rep	five_prime_UTR	23142168	23142339	.	+	.	Parent=Os11t0601950-01
Chr11	irgsp1_rep	CDS	23142340	23142614	.	+	0	Parent=Os11t0601950-01
Chr11	irgsp1_rep	CDS	23143777	23143828	.	+	1	Parent=Os11t0601950-01
Chr11	irgsp1_rep	three_prime_UTR	23143829	23145064	.	+	.	Parent=Os11t0601950-01
Chr11	irgsp1_rep	mRNA	23158472	23164209	.	+	.	ID=Os11t0602200-01;Name=Os11t0602200-01;Locus_id=Os11g0602200;Oryzabase Gene Symbol Synonym(s)=OsSET41%2C SDG704%2C OsSUVH1;Oryzabase Gene Name Synonym(s)=SET protein 41%2C SUVH Histone Methyltransferase 1;Note=Similar to SET domain protein SDG111.;Transcript_evidence=AK102379 (DDBJ%2C Best hit);ORF_evidence=Q9AT64 (UniProt);GO=Biological Process: histone lysine methylation (GO:0034968),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: histone-lysine N-methyltransferase activity (GO:0018024),Molecular Function: histone binding (GO:0042393);InterPro=SET domain (IPR001214),SRA-YDG (IPR003105),Post-SET domain (IPR003616),Pre-SET domain (IPR007728),AT hook%2C DNA-binding motif (IPR017956),AT hook-like (IPR020478);NIAS_FLcDNA=J033092A08;Oryzabase=13404;Expression=AK102379;TENOR=Os11t0602200-01;KEGG=Os11t0602200-01
Chr11	irgsp1_rep	five_prime_UTR	23158472	23158699	.	+	.	Parent=Os11t0602200-01
Chr11	irgsp1_rep	five_prime_UTR	23160267	23160332	.	+	.	Parent=Os11t0602200-01
Chr11	irgsp1_rep	five_prime_UTR	23160435	23160531	.	+	.	Parent=Os11t0602200-01
Chr11	irgsp1_rep	CDS	23160532	23162973	.	+	0	Parent=Os11t0602200-01
Chr11	irgsp1_rep	three_prime_UTR	23162974	23163022	.	+	.	Parent=Os11t0602200-01
Chr11	irgsp1_rep	three_prime_UTR	23163823	23164209	.	+	.	Parent=Os11t0602200-01
Chr11	irgsp1_rep	mRNA	23161432	23164227	.	+	.	ID=Os11t0602200-02;Name=Os11t0602200-02;Locus_id=Os11g0602200;Oryzabase Gene Symbol Synonym(s)=OsSET41%2C SDG704%2C OsSUVH1;Oryzabase Gene Name Synonym(s)=SET protein 41%2C SUVH Histone Methyltransferase 1;Note=Similar to SET1.;Transcript_evidence=AK059336 (DDBJ%2C Best hit);ORF_evidence=Q9AT64 (UniProt);GO=Biological Process: histone lysine methylation (GO:0034968),Cellular Component: nucleus (GO:0005634),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: histone-lysine N-methyltransferase activity (GO:0018024),Molecular Function: histone binding (GO:0042393);InterPro=SET domain (IPR001214),SRA-YDG (IPR003105),Pre-SET zinc-binding sub-group (IPR003606),Pre-SET domain (IPR007728);NIAS_FLcDNA=001-026-A12;Oryzabase=13404;Expression=AK059336;TENOR=Os11t0602200-02;KEGG=Os11t0602200-02 (EC:2.1.1.43)
Chr11	irgsp1_rep	CDS	23161432	23162904	.	+	0	Parent=Os11t0602200-02
Chr11	irgsp1_rep	CDS	23163843	23163986	.	+	0	Parent=Os11t0602200-02
Chr11	irgsp1_rep	three_prime_UTR	23163987	23164227	.	+	.	Parent=Os11t0602200-02
Chr11	irgsp1_rep	mRNA	23171943	23176340	.	+	.	ID=Os11t0602300-01;Name=Os11t0602300-01;Locus_id=Os11g0602300;Oryzabase Gene Symbol Synonym(s)=BIP124;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 124%2C BRI1-interacting protein 124%2C brassinosteroid receptor kinase-interacting protein 124;Note=Similar to HVA22-like protein a (AtHVA22a).;Transcript_evidence=AK103473 (DDBJ%2C Best hit);ORF_evidence=B6UCA0 (UniProt);InterPro=TB2/DP1/HVA22-related protein (IPR004345);NIAS_FLcDNA=J033130B07;Oryzabase=13679;Expression=AK103473;TENOR=Os11t0602300-01;KEGG=Os11t0602300-01
Chr11	irgsp1_rep	five_prime_UTR	23171943	23172189	.	+	.	Parent=Os11t0602300-01
Chr11	irgsp1_rep	CDS	23172190	23172245	.	+	0	Parent=Os11t0602300-01
Chr11	irgsp1_rep	CDS	23173778	23173804	.	+	1	Parent=Os11t0602300-01
Chr11	irgsp1_rep	CDS	23173903	23174025	.	+	1	Parent=Os11t0602300-01
Chr11	irgsp1_rep	CDS	23174902	23175145	.	+	1	Parent=Os11t0602300-01
Chr11	irgsp1_rep	CDS	23175522	23176016	.	+	0	Parent=Os11t0602300-01
Chr11	irgsp1_rep	three_prime_UTR	23176017	23176030	.	+	.	Parent=Os11t0602300-01
Chr11	irgsp1_rep	three_prime_UTR	23176118	23176340	.	+	.	Parent=Os11t0602300-01
Chr11	irgsp1_rep	mRNA	23176608	23178790	.	+	.	ID=Os11t0602400-01;Name=Os11t0602400-01;Locus_id=Os11g0602400;Note=tRNA intron endonuclease%2C catalytic domain-like domain containing protein.;Transcript_evidence=AK061077 (DDBJ%2C Best hit);ORF_evidence=NP_001148986.1 (RefSeq);GO=Biological Process: tRNA splicing%2C via endonucleolytic cleavage and ligation (GO:0006388),Molecular Function: tRNA-intron endonuclease activity (GO:0000213),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: nuclease activity (GO:0004518);InterPro=tRNA intron endonuclease%2C catalytic domain-like (IPR006677),tRNA intron endonuclease%2C N-terminal (IPR006678),Endonuclease TnsA%2C N-terminal/resolvase Hjc/tRNA endonuclease%2C C-terminal (IPR011856);NIAS_FLcDNA=006-206-E08;Expression=AK061077;TENOR=Os11t0602400-01;KEGG=Os11t0602400-01 (EC:3.1.27.9)
Chr11	irgsp1_rep	five_prime_UTR	23176608	23176679	.	+	.	Parent=Os11t0602400-01
Chr11	irgsp1_rep	five_prime_UTR	23177798	23177848	.	+	.	Parent=Os11t0602400-01
Chr11	irgsp1_rep	CDS	23177849	23178727	.	+	0	Parent=Os11t0602400-01
Chr11	irgsp1_rep	three_prime_UTR	23178728	23178790	.	+	.	Parent=Os11t0602400-01
Chr11	irgsp1_rep	mRNA	23181023	23182739	.	+	.	ID=Os11t0602500-00;Name=Os11t0602500-00;Locus_id=Os11g0602500;Note=Similar to 40S ribosomal protein S9.;Transcript_evidence=EU964342 (DDBJ);ORF_evidence=A2ZFU3 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: small ribosomal subunit (GO:0015935),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735),Molecular Function: rRNA binding (GO:0019843);InterPro=Ribosomal protein S4/S9%2C N-terminal (IPR001912),RNA-binding S4 (IPR002942),Ribosomal protein S4/S9%2C eukaryotic/archaeal (IPR005710),Ribosomal protein S4%2C conserved site (IPR018079),Ribosomal protein S4/S9 (IPR022801);TENOR=Os11t0602500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	23181023	23181474	.	+	0	Parent=Os11t0602500-00
Chr11	irgsp1_rep	CDS	23182369	23182546	.	+	1	Parent=Os11t0602500-00
Chr11	irgsp1_rep	three_prime_UTR	23182547	23182739	.	+	.	Parent=Os11t0602500-00
Chr11	irgsp1_rep	mRNA	23181093	23182560	.	-	.	ID=Os11t0602550-00;Name=Os11t0602550-00;Locus_id=Os11g0602550;Note=Conserved hypothetical protein.;Transcript_evidence=BT016876 (DDBJ);ORF_evidence=XP_003081247.1 (RefSeq);TENOR=Os11t0602550-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	23182366	23182560	.	-	0	Parent=Os11t0602550-00
Chr11	irgsp1_rep	CDS	23181397	23181471	.	-	0	Parent=Os11t0602550-00
Chr11	irgsp1_rep	three_prime_UTR	23181093	23181396	.	-	.	Parent=Os11t0602550-00
Chr11	irgsp1_rep	mRNA	23184448	23187520	.	+	.	ID=Os11t0602600-01;Name=Os11t0602600-01;Locus_id=Os11g0602600;Oryzabase Gene Name Synonym(s)=Ribosomal protein 1024;Note=Similar to 40S ribosomal protein S9.;Transcript_evidence=AK104660 (DDBJ%2C Best hit),AK072671 (DDBJ%2C Best hit);ORF_evidence=A2ZFU3 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: small ribosomal subunit (GO:0015935),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735),Molecular Function: rRNA binding (GO:0019843);InterPro=Ribosomal protein S4/S9%2C N-terminal (IPR001912),RNA-binding S4 (IPR002942),Ribosomal protein S4/S9%2C eukaryotic/archaeal (IPR005710),Ribosomal protein S4%2C conserved site (IPR018079),Ribosomal protein S4/S9 (IPR022801);NIAS_FLcDNA=006-311-D11,J023134P20;Oryzabase=17655;Expression=AK104660;TENOR=Os11t0602600-01;KEGG=Os11t0602600-01
Chr11	irgsp1_rep	five_prime_UTR	23184448	23184511	.	+	.	Parent=Os11t0602600-01
Chr11	irgsp1_rep	CDS	23184512	23184539	.	+	0	Parent=Os11t0602600-01
Chr11	irgsp1_rep	CDS	23185852	23186233	.	+	2	Parent=Os11t0602600-01
Chr11	irgsp1_rep	CDS	23187050	23187227	.	+	1	Parent=Os11t0602600-01
Chr11	irgsp1_rep	three_prime_UTR	23187228	23187520	.	+	.	Parent=Os11t0602600-01
Chr11	irgsp1_rep	mRNA	23185852	23187221	.	-	.	ID=Os11t0602701-00;Name=Os11t0602701-00;Locus_id=Os11g0602701;Note=Hypothetical gene.;Transcript_evidence=BT016876 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0602701-00
Chr11	irgsp1_rep	five_prime_UTR	23187047	23187221	.	-	.	Parent=Os11t0602701-00
Chr11	irgsp1_rep	five_prime_UTR	23186202	23186230	.	-	.	Parent=Os11t0602701-00
Chr11	irgsp1_rep	CDS	23185917	23186201	.	-	0	Parent=Os11t0602701-00
Chr11	irgsp1_rep	three_prime_UTR	23185852	23185916	.	-	.	Parent=Os11t0602701-00
Chr11	irgsp1_rep	mRNA	23187999	23193264	.	-	.	ID=Os11t0602750-01;Name=Os11t0602750-01;Locus_id=Os11g0602750;Note=Conserved hypothetical protein.;Transcript_evidence=AK242657 (DDBJ%2C Best hit);ORF_evidence=NP_001176642.1 (RefSeq);NIAS_FLcDNA=J090027G14;TENOR=Os11t0602750-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	23190299	23193264	.	-	.	Parent=Os11t0602750-01
Chr11	irgsp1_rep	five_prime_UTR	23190121	23190215	.	-	.	Parent=Os11t0602750-01
Chr11	irgsp1_rep	CDS	23190119	23190120	.	-	0	Parent=Os11t0602750-01
Chr11	irgsp1_rep	CDS	23189799	23190029	.	-	1	Parent=Os11t0602750-01
Chr11	irgsp1_rep	CDS	23188356	23188392	.	-	1	Parent=Os11t0602750-01
Chr11	irgsp1_rep	three_prime_UTR	23187999	23188355	.	-	.	Parent=Os11t0602750-01
Chr11	irgsp1_rep	mRNA	23194895	23197316	.	-	.	ID=Os11t0602800-01;Name=Os11t0602800-01;Locus_id=Os11g0602800;Note=Galactose oxidase/kelch%2C beta-propeller domain containing protein.;Transcript_evidence=AK070903 (DDBJ%2C Best hit);ORF_evidence=XP_002330094.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Kelch repeat type 1 (IPR006652),Kelch-type beta propeller (IPR015915);NIAS_FLcDNA=J023074L02;Expression=AK070903;TENOR=Os11t0602800-01;KEGG=Os11t0602800-01
Chr11	irgsp1_rep	five_prime_UTR	23197041	23197316	.	-	.	Parent=Os11t0602800-01
Chr11	irgsp1_rep	five_prime_UTR	23196601	23196749	.	-	.	Parent=Os11t0602800-01
Chr11	irgsp1_rep	CDS	23195302	23196600	.	-	0	Parent=Os11t0602800-01
Chr11	irgsp1_rep	three_prime_UTR	23194895	23195301	.	-	.	Parent=Os11t0602800-01
Chr11	irgsp1_rep	mRNA	23212475	23217461	.	+	.	ID=Os11t0602900-01;Name=Os11t0602900-01;Locus_id=Os11g0602900;CGSNL Gene Symbol=CYP23;CGSNL Gene Name=CYCLOPHILIN 23;Oryzabase Gene Symbol Synonym(s)=OsCYP23%2C OsCYP-28%2C OsCYP23a%2C OsCYP23b%2C OsCYP23c;Oryzabase Gene Name Synonym(s)=cyclophilin 23%2C cyclophilin 28;Note=Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type domain containing protein.;Transcript_evidence=AK068821 (DDBJ%2C Best hit),AK104231 (DDBJ%2C Best hit);ORF_evidence=NP_001150697.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);InterPro=Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type (IPR002130),Cyclophilin-like (IPR015891);NIAS_FLcDNA=J013168A08,006-307-E09;Oryzabase=10065;TENOR=Os11t0602900-01
Chr11	irgsp1_rep	five_prime_UTR	23212475	23212539	.	+	.	Parent=Os11t0602900-01
Chr11	irgsp1_rep	CDS	23212540	23212677	.	+	0	Parent=Os11t0602900-01
Chr11	irgsp1_rep	CDS	23213479	23213592	.	+	0	Parent=Os11t0602900-01
Chr11	irgsp1_rep	CDS	23213678	23213826	.	+	0	Parent=Os11t0602900-01
Chr11	irgsp1_rep	CDS	23214190	23214262	.	+	1	Parent=Os11t0602900-01
Chr11	irgsp1_rep	CDS	23214343	23214432	.	+	0	Parent=Os11t0602900-01
Chr11	irgsp1_rep	CDS	23214787	23214826	.	+	0	Parent=Os11t0602900-01
Chr11	irgsp1_rep	CDS	23215614	23215696	.	+	2	Parent=Os11t0602900-01
Chr11	irgsp1_rep	CDS	23215814	23215834	.	+	0	Parent=Os11t0602900-01
Chr11	irgsp1_rep	three_prime_UTR	23215835	23215851	.	+	.	Parent=Os11t0602900-01
Chr11	irgsp1_rep	three_prime_UTR	23217164	23217461	.	+	.	Parent=Os11t0602900-01
Chr11	irgsp1_rep	mRNA	23212506	23217465	.	+	.	ID=Os11t0602900-02;Name=Os11t0602900-02;Locus_id=Os11g0602900;CGSNL Gene Symbol=CYP23;CGSNL Gene Name=CYCLOPHILIN 23;Oryzabase Gene Symbol Synonym(s)=OsCYP23%2C OsCYP-28%2C OsCYP23a%2C OsCYP23b%2C OsCYP23c;Oryzabase Gene Name Synonym(s)=cyclophilin 23%2C cyclophilin 28;Note=Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type domain containing protein.;Transcript_evidence=AK059904 (DDBJ%2C Best hit);ORF_evidence=NP_001150697.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);InterPro=Peptidyl-prolyl cis-trans isomerase%2C cyclophilin-type (IPR002130),Cyclophilin-like (IPR015891);NIAS_FLcDNA=006-208-G11;Oryzabase=10065;Expression=AK059904;TENOR=Os11t0602900-02;KEGG=Os11t0602900-02
Chr11	irgsp1_rep	five_prime_UTR	23212506	23212539	.	+	.	Parent=Os11t0602900-02
Chr11	irgsp1_rep	CDS	23212540	23212677	.	+	0	Parent=Os11t0602900-02
Chr11	irgsp1_rep	CDS	23213479	23213592	.	+	0	Parent=Os11t0602900-02
Chr11	irgsp1_rep	CDS	23213678	23213826	.	+	0	Parent=Os11t0602900-02
Chr11	irgsp1_rep	CDS	23214190	23214262	.	+	1	Parent=Os11t0602900-02
Chr11	irgsp1_rep	CDS	23214343	23214432	.	+	0	Parent=Os11t0602900-02
Chr11	irgsp1_rep	CDS	23214787	23214826	.	+	0	Parent=Os11t0602900-02
Chr11	irgsp1_rep	CDS	23215614	23215696	.	+	2	Parent=Os11t0602900-02
Chr11	irgsp1_rep	CDS	23215814	23215834	.	+	0	Parent=Os11t0602900-02
Chr11	irgsp1_rep	three_prime_UTR	23215835	23215851	.	+	.	Parent=Os11t0602900-02
Chr11	irgsp1_rep	three_prime_UTR	23217167	23217465	.	+	.	Parent=Os11t0602900-02
Chr11	irgsp1_rep	mRNA	23222907	23224222	.	+	.	ID=Os11t0603000-01;Name=Os11t0603000-01;Locus_id=Os11g0603000;CGSNL Gene Symbol=ILI2;CGSNL Gene Name=INCREASED LEAF INCLINATION 2;Oryzabase Gene Symbol Synonym(s)=ILI2%2C OsbHLH186%2C bHLH186;Oryzabase Gene Name Synonym(s)=Increased Leaf Inclination 2%2C basic helix-loop-helix protein 186;Note=Basic helix-loop-helix dimerisation region bHLH domain containing protein.;Transcript_evidence=AK111303 (DDBJ%2C Best hit);ORF_evidence=Q9FSQ9 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=002-181-B06;Oryzabase=10946;Expression=AK111303;TENOR=Os11t0603000-01;KEGG=Os11t0603000-01
Chr11	irgsp1_rep	five_prime_UTR	23222907	23222993	.	+	.	Parent=Os11t0603000-01
Chr11	irgsp1_rep	CDS	23222994	23223128	.	+	0	Parent=Os11t0603000-01
Chr11	irgsp1_rep	CDS	23223865	23224035	.	+	0	Parent=Os11t0603000-01
Chr11	irgsp1_rep	three_prime_UTR	23224036	23224222	.	+	.	Parent=Os11t0603000-01
Chr11	irgsp1_rep	mRNA	23226173	23226629	.	-	.	ID=Os11t0603100-00;Name=Os11t0603100-00;Locus_id=Os11g0603100;Note=Similar to predicted protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001176643.1 (RefSeq);TENOR=Os11t0603100-00
Chr11	irgsp1_rep	CDS	23226612	23226629	.	-	0	Parent=Os11t0603100-00
Chr11	irgsp1_rep	CDS	23226173	23226523	.	-	0	Parent=Os11t0603100-00
Chr11	irgsp1_rep	mRNA	23230112	23233926	.	+	.	ID=Os11t0603200-01;Name=Os11t0603200-01;Locus_id=Os11g0603200;CGSNL Gene Symbol=ABCF6;CGSNL Gene Name=ABC TRANSPORTER F FAMILY MEMBER 6;Oryzabase Gene Symbol Synonym(s)=OsABCF6;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCF subgroup member 6;Note=Similar to ABCF-type protein.;Transcript_evidence=AK120191 (DDBJ%2C Best hit);ORF_evidence=XP_002449815.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=J013035E03;Oryzabase=11980;Expression=AK120191;TENOR=Os11t0603200-01;KEGG=Os11t0603200-01
Chr11	irgsp1_rep	five_prime_UTR	23230112	23230214	.	+	.	Parent=Os11t0603200-01
Chr11	irgsp1_rep	CDS	23230215	23231036	.	+	0	Parent=Os11t0603200-01
Chr11	irgsp1_rep	CDS	23231219	23231560	.	+	0	Parent=Os11t0603200-01
Chr11	irgsp1_rep	CDS	23231673	23231813	.	+	0	Parent=Os11t0603200-01
Chr11	irgsp1_rep	CDS	23231923	23232102	.	+	0	Parent=Os11t0603200-01
Chr11	irgsp1_rep	CDS	23232327	23232482	.	+	0	Parent=Os11t0603200-01
Chr11	irgsp1_rep	CDS	23232571	23232672	.	+	0	Parent=Os11t0603200-01
Chr11	irgsp1_rep	CDS	23232803	23232931	.	+	0	Parent=Os11t0603200-01
Chr11	irgsp1_rep	CDS	23233353	23233457	.	+	0	Parent=Os11t0603200-01
Chr11	irgsp1_rep	CDS	23233563	23233658	.	+	0	Parent=Os11t0603200-01
Chr11	irgsp1_rep	three_prime_UTR	23233659	23233926	.	+	.	Parent=Os11t0603200-01
Chr11	irgsp1_rep	mRNA	23232875	23234075	.	+	.	ID=Os11t0603200-02;Name=Os11t0603200-02;Locus_id=Os11g0603200;CGSNL Gene Symbol=ABCF6;CGSNL Gene Name=ABC TRANSPORTER F FAMILY MEMBER 6;Oryzabase Gene Symbol Synonym(s)=OsABCF6;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCF subgroup member 6;Note=Similar to ABCF-type protein.;Transcript_evidence=AK059060 (DDBJ%2C Best hit);ORF_evidence=NP_001105535.1 (RefSeq);NIAS_FLcDNA=001-021-G01;Oryzabase=11980;Expression=AK059060;TENOR=Os11t0603200-02;KEGG=Os11t0603200-02
Chr11	irgsp1_rep	CDS	23232875	23232931	.	+	0	Parent=Os11t0603200-02
Chr11	irgsp1_rep	CDS	23233353	23233457	.	+	0	Parent=Os11t0603200-02
Chr11	irgsp1_rep	CDS	23233563	23233658	.	+	0	Parent=Os11t0603200-02
Chr11	irgsp1_rep	three_prime_UTR	23233659	23234075	.	+	.	Parent=Os11t0603200-02
Chr11	irgsp1_rep	mRNA	23269156	23270184	.	-	.	ID=Os11t0604100-00;Name=Os11t0604100-00;Locus_id=Os11g0604100;Note=Conserved hypothetical protein.;Transcript_evidence=EU970921 (DDBJ);ORF_evidence=Q94GH1 (UniProt);TENOR=Os11t0604100-00
Chr11	irgsp1_rep	five_prime_UTR	23270077	23270184	.	-	.	Parent=Os11t0604100-00
Chr11	irgsp1_rep	CDS	23269989	23270076	.	-	0	Parent=Os11t0604100-00
Chr11	irgsp1_rep	CDS	23269218	23269222	.	-	2	Parent=Os11t0604100-00
Chr11	irgsp1_rep	three_prime_UTR	23269156	23269217	.	-	.	Parent=Os11t0604100-00
Chr11	irgsp1_rep	mRNA	23283945	23284798	.	-	.	ID=Os11t0604500-01;Name=Os11t0604500-01;Locus_id=Os11g0604500;Note=Conserved hypothetical protein.;Transcript_evidence=AK109280 (DDBJ%2C Best hit);ORF_evidence=A2ZFS4 (UniProt);NIAS_FLcDNA=002-188-B05;Expression=AK109280;TENOR=Os11t0604500-01;KEGG=Os11t0604500-01
Chr11	irgsp1_rep	five_prime_UTR	23284744	23284798	.	-	.	Parent=Os11t0604500-01
Chr11	irgsp1_rep	CDS	23284216	23284743	.	-	0	Parent=Os11t0604500-01
Chr11	irgsp1_rep	three_prime_UTR	23283945	23284215	.	-	.	Parent=Os11t0604500-01
Chr11	irgsp1_rep	mRNA	23291054	23294464	.	+	.	ID=Os11t0604600-01;Name=Os11t0604600-01;Locus_id=Os11g0604600;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK102376 (DDBJ%2C Best hit);ORF_evidence=B6TBG5 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-CH-type (IPR011016),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J033091P05;Expression=AK102376;TENOR=Os11t0604600-01;KEGG=Os11t0604600-01
Chr11	irgsp1_rep	five_prime_UTR	23291054	23291222	.	+	.	Parent=Os11t0604600-01
Chr11	irgsp1_rep	CDS	23291223	23291358	.	+	0	Parent=Os11t0604600-01
Chr11	irgsp1_rep	CDS	23291466	23291551	.	+	2	Parent=Os11t0604600-01
Chr11	irgsp1_rep	CDS	23291963	23292109	.	+	0	Parent=Os11t0604600-01
Chr11	irgsp1_rep	CDS	23292202	23292310	.	+	0	Parent=Os11t0604600-01
Chr11	irgsp1_rep	CDS	23293546	23293669	.	+	2	Parent=Os11t0604600-01
Chr11	irgsp1_rep	CDS	23293763	23294036	.	+	1	Parent=Os11t0604600-01
Chr11	irgsp1_rep	CDS	23294120	23294221	.	+	0	Parent=Os11t0604600-01
Chr11	irgsp1_rep	three_prime_UTR	23294222	23294464	.	+	.	Parent=Os11t0604600-01
Chr11	irgsp1_rep	mRNA	23291111	23294409	.	+	.	ID=Os11t0604600-02;Name=Os11t0604600-02;Locus_id=Os11g0604600;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK061397 (DDBJ%2C Best hit);ORF_evidence=B6TBG5 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-CH-type (IPR011016),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=006-305-E09;Expression=AK061397;TENOR=Os11t0604600-02;KEGG=Os11t0604600-02
Chr11	irgsp1_rep	five_prime_UTR	23291111	23291222	.	+	.	Parent=Os11t0604600-02
Chr11	irgsp1_rep	CDS	23291223	23291358	.	+	0	Parent=Os11t0604600-02
Chr11	irgsp1_rep	CDS	23291466	23291551	.	+	2	Parent=Os11t0604600-02
Chr11	irgsp1_rep	CDS	23291963	23292109	.	+	0	Parent=Os11t0604600-02
Chr11	irgsp1_rep	CDS	23292202	23292310	.	+	0	Parent=Os11t0604600-02
Chr11	irgsp1_rep	CDS	23293546	23293669	.	+	2	Parent=Os11t0604600-02
Chr11	irgsp1_rep	CDS	23293763	23294036	.	+	1	Parent=Os11t0604600-02
Chr11	irgsp1_rep	CDS	23294120	23294221	.	+	0	Parent=Os11t0604600-02
Chr11	irgsp1_rep	three_prime_UTR	23294222	23294409	.	+	.	Parent=Os11t0604600-02
Chr11	irgsp1_rep	mRNA	23295169	23298744	.	+	.	ID=Os11t0604700-00;Name=Os11t0604700-00;Locus_id=Os11g0604700;Note=Thioredoxin domain 2 containing protein.;Transcript_evidence=CT837501 (DDBJ%2C Best hit);ORF_evidence=NP_190665.2 (RefSeq);GO=Biological Process: cell redox homeostasis (GO:0045454);InterPro=Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766);TENOR=Os11t0604700-00;KEGG=Os11t0604700-00
Chr11	irgsp1_rep	five_prime_UTR	23295169	23295275	.	+	.	Parent=Os11t0604700-00
Chr11	irgsp1_rep	CDS	23295276	23295359	.	+	0	Parent=Os11t0604700-00
Chr11	irgsp1_rep	CDS	23297288	23297362	.	+	0	Parent=Os11t0604700-00
Chr11	irgsp1_rep	CDS	23297467	23297514	.	+	0	Parent=Os11t0604700-00
Chr11	irgsp1_rep	CDS	23297601	23297743	.	+	0	Parent=Os11t0604700-00
Chr11	irgsp1_rep	CDS	23297851	23297923	.	+	1	Parent=Os11t0604700-00
Chr11	irgsp1_rep	CDS	23298007	23298068	.	+	0	Parent=Os11t0604700-00
Chr11	irgsp1_rep	CDS	23298223	23298320	.	+	1	Parent=Os11t0604700-00
Chr11	irgsp1_rep	CDS	23298397	23298506	.	+	2	Parent=Os11t0604700-00
Chr11	irgsp1_rep	three_prime_UTR	23298507	23298744	.	+	.	Parent=Os11t0604700-00
Chr11	irgsp1_rep	mRNA	23308317	23313424	.	-	.	ID=Os11t0604900-00;Name=Os11t0604900-00;Locus_id=Os11g0604900;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R1H5 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os11t0604900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	23312556	23313424	.	-	0	Parent=Os11t0604900-00
Chr11	irgsp1_rep	CDS	23308317	23310435	.	-	1	Parent=Os11t0604900-00
Chr11	irgsp1_rep	mRNA	23333715	23337436	.	+	.	ID=Os11t0605100-01;Name=Os11t0605100-01;Locus_id=Os11g0605100;Note=NB-ARC domain containing protein.;Transcript_evidence=AK065824 (DDBJ%2C Best hit);ORF_evidence=Q2R1F7 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013041A20;Expression=AK065824;TENOR=Os11t0605100-01;KEGG=Os11t0605100-01
Chr11	irgsp1_rep	five_prime_UTR	23333715	23333824	.	+	.	Parent=Os11t0605100-01
Chr11	irgsp1_rep	CDS	23333825	23334468	.	+	0	Parent=Os11t0605100-01
Chr11	irgsp1_rep	CDS	23334538	23334687	.	+	1	Parent=Os11t0605100-01
Chr11	irgsp1_rep	CDS	23334800	23336990	.	+	1	Parent=Os11t0605100-01
Chr11	irgsp1_rep	three_prime_UTR	23336991	23337004	.	+	.	Parent=Os11t0605100-01
Chr11	irgsp1_rep	three_prime_UTR	23337103	23337436	.	+	.	Parent=Os11t0605100-01
Chr11	irgsp1_rep	mRNA	23344407	23344691	.	+	.	ID=Os11t0605200-00;Name=Os11t0605200-00;Locus_id=Os11g0605200;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FI82 (UniProt);TENOR=Os11t0605200-00;KEGG=Os11t0605200-00
Chr11	irgsp1_rep	CDS	23344407	23344691	.	+	0	Parent=Os11t0605200-00
Chr11	irgsp1_rep	mRNA	23346655	23348579	.	+	.	ID=Os11t0605300-01;Name=Os11t0605300-01;Locus_id=Os11g0605300;Note=Conserved hypothetical protein.;Transcript_evidence=AK069391 (DDBJ%2C Best hit);ORF_evidence=Q8S5S0 (UniProt);NIAS_FLcDNA=J023012L02;TENOR=Os11t0605300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	23346655	23346655	.	+	.	Parent=Os11t0605300-01
Chr11	irgsp1_rep	CDS	23346656	23347087	.	+	0	Parent=Os11t0605300-01
Chr11	irgsp1_rep	three_prime_UTR	23347088	23348579	.	+	.	Parent=Os11t0605300-01
Chr11	irgsp1_rep	mRNA	23354197	23358318	.	-	.	ID=Os11t0605500-01;Name=Os11t0605500-01;Locus_id=Os11g0605500;Oryzabase Gene Symbol Synonym(s)=ACX2%2C OsACX2;Oryzabase Gene Name Synonym(s)=acyl-CoA oxidase 2;Note=Acyl-CoA oxidase.;Transcript_evidence=AK243510 (DDBJ%2C Best hit);ORF_evidence=Q6LC98 (UniProt);GO=Biological Process: fatty acid metabolic process (GO:0006631),Biological Process: fatty acid beta-oxidation (GO:0006635),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: peroxisome (GO:0005777),Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995),Molecular Function: acyl-CoA oxidase activity (GO:0003997),Molecular Function: oxidoreductase activity%2C acting on the CH-CH group of donors (GO:0016627),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=Acyl-CoA oxidase%2C C-terminal (IPR002655),Acyl-CoA oxidase/dehydrogenase%2C type 1 (IPR006090),Acyl-CoA oxidase/dehydrogenase%2C central domain (IPR006091),Acyl-CoA dehydrogenase/oxidase C-terminal (IPR009075),Acyl-CoA dehydrogenase/oxidase (IPR009100),Acyl-CoA oxidase (IPR012258),Acyl-CoA dehydrogenase/oxidase%2C N-terminal (IPR013786);NIAS_FLcDNA=J100075B22;Oryzabase=16027;TENOR=Os11t0605500-01;KEGG=Os11t0605500-01 (EC:1.3.3.6)
Chr11	irgsp1_rep	five_prime_UTR	23358254	23358318	.	-	.	Parent=Os11t0605500-01
Chr11	irgsp1_rep	CDS	23357781	23358253	.	-	0	Parent=Os11t0605500-01
Chr11	irgsp1_rep	CDS	23356764	23356879	.	-	1	Parent=Os11t0605500-01
Chr11	irgsp1_rep	CDS	23355580	23356463	.	-	2	Parent=Os11t0605500-01
Chr11	irgsp1_rep	CDS	23355193	23355372	.	-	0	Parent=Os11t0605500-01
Chr11	irgsp1_rep	CDS	23354950	23355116	.	-	0	Parent=Os11t0605500-01
Chr11	irgsp1_rep	CDS	23354696	23354819	.	-	1	Parent=Os11t0605500-01
Chr11	irgsp1_rep	CDS	23354447	23354602	.	-	0	Parent=Os11t0605500-01
Chr11	irgsp1_rep	three_prime_UTR	23354197	23354446	.	-	.	Parent=Os11t0605500-01
Chr11	irgsp1_rep	mRNA	23361134	23361916	.	-	.	ID=Os11t0605600-00;Name=Os11t0605600-00;Locus_id=Os11g0605600;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R1F8 (UniProt);TENOR=Os11t0605600-00
Chr11	irgsp1_rep	CDS	23361134	23361916	.	-	0	Parent=Os11t0605600-00
Chr11	irgsp1_rep	mRNA	23375169	23376295	.	+	.	ID=Os11t0605800-01;Name=Os11t0605800-01;Locus_id=Os11g0605800;Note=Non-protein coding transcript.;Transcript_evidence=AK106619 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-113-A10;TENOR=Os11t0605800-01
Chr11	irgsp1_rep	exon	23375169	23375502	.	+	.	Parent=Os11t0605800-01
Chr11	irgsp1_rep	exon	23375874	23376295	.	+	.	Parent=Os11t0605800-01
Chr11	irgsp1_rep	mRNA	23375538	23378661	.	-	.	ID=Os11t0605900-01;Name=Os11t0605900-01;Locus_id=Os11g0605900;Note=Conserved hypothetical protein.;Transcript_evidence=AK119331 (DDBJ%2C Best hit);ORF_evidence=A2Y110 (UniProt);NIAS_FLcDNA=001-131-B07;Expression=AK119331;TENOR=Os11t0605900-01;KEGG=Os11t0605900-01
Chr11	irgsp1_rep	five_prime_UTR	23378553	23378661	.	-	.	Parent=Os11t0605900-01
Chr11	irgsp1_rep	CDS	23377770	23378552	.	-	0	Parent=Os11t0605900-01
Chr11	irgsp1_rep	three_prime_UTR	23375538	23377769	.	-	.	Parent=Os11t0605900-01
Chr11	irgsp1_rep	mRNA	23378597	23379194	.	+	.	ID=Os11t0606001-00;Name=Os11t0606001-00;Locus_id=Os11g0606001;Note=Conserved hypothetical protein.;Transcript_evidence=CT837831 (DDBJ%2C Best hit);ORF_evidence=B9F9S4 (UniProt);TENOR=Os11t0606001-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	23378597	23378799	.	+	.	Parent=Os11t0606001-00
Chr11	irgsp1_rep	CDS	23378800	23378904	.	+	0	Parent=Os11t0606001-00
Chr11	irgsp1_rep	three_prime_UTR	23378905	23379194	.	+	.	Parent=Os11t0606001-00
Chr11	irgsp1_rep	mRNA	23389911	23391708	.	+	.	ID=Os11t0606100-01;Name=Os11t0606100-01;Locus_id=Os11g0606100;Note=NB-ARC domain containing protein.;Transcript_evidence=AK109636 (DDBJ%2C Best hit);ORF_evidence=NP_001068247.1 (RefSeq);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);NIAS_FLcDNA=002-138-D11;TENOR=Os11t0606100-01;KEGG=Os11t0606100-01
Chr11	irgsp1_rep	five_prime_UTR	23389911	23389949	.	+	.	Parent=Os11t0606100-01
Chr11	irgsp1_rep	CDS	23389950	23390720	.	+	0	Parent=Os11t0606100-01
Chr11	irgsp1_rep	three_prime_UTR	23390721	23391708	.	+	.	Parent=Os11t0606100-01
Chr11	irgsp1_rep	mRNA	23395375	23397731	.	+	.	ID=Os11t0606200-01;Name=Os11t0606200-01;Locus_id=Os11g0606200;Note=Similar to Leucine Rich Repeat family protein%2C expressed.;Transcript_evidence=AK106459 (DDBJ%2C Best hit);ORF_evidence=Q2R1G1 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: ADP binding (GO:0043531);InterPro=Leucine-rich repeat (IPR001611),NB-ARC (IPR002182),Leucine-rich repeat%2C typical subtype (IPR003591);NIAS_FLcDNA=002-103-G04;TENOR=Os11t0606200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	23395375	23395376	.	+	.	Parent=Os11t0606200-01
Chr11	irgsp1_rep	CDS	23395377	23397581	.	+	0	Parent=Os11t0606200-01
Chr11	irgsp1_rep	three_prime_UTR	23397582	23397731	.	+	.	Parent=Os11t0606200-01
Chr11	irgsp1_rep	mRNA	23398772	23401453	.	+	.	ID=Os11t0606300-01;Name=Os11t0606300-01;Locus_id=Os11g0606300;Note=Similar to eukaryotic translation initiation factor 3 subunit 2.;Transcript_evidence=AK241909 (DDBJ%2C Best hit);ORF_evidence=NP_001147501.1 (RefSeq);NIAS_FLcDNA=J075053G16;TENOR=Os11t0606300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	23398772	23398957	.	+	.	Parent=Os11t0606300-01
Chr11	irgsp1_rep	five_prime_UTR	23399051	23399142	.	+	.	Parent=Os11t0606300-01
Chr11	irgsp1_rep	five_prime_UTR	23399690	23399770	.	+	.	Parent=Os11t0606300-01
Chr11	irgsp1_rep	CDS	23399771	23399809	.	+	0	Parent=Os11t0606300-01
Chr11	irgsp1_rep	CDS	23400640	23400726	.	+	0	Parent=Os11t0606300-01
Chr11	irgsp1_rep	CDS	23400845	23400925	.	+	0	Parent=Os11t0606300-01
Chr11	irgsp1_rep	three_prime_UTR	23400926	23401453	.	+	.	Parent=Os11t0606300-01
Chr11	irgsp1_rep	mRNA	23403454	23407183	.	-	.	ID=Os11t0606400-02;Name=Os11t0606400-02;Locus_id=Os11g0606400;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=AK066515 (DDBJ%2C Best hit),AK120451 (DDBJ%2C Best hit);ORF_evidence=Q2R1F9 (UniProt);NIAS_FLcDNA=J013069D10,J013102N23;TENOR=Os11t0606400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	23406961	23407183	.	-	.	Parent=Os11t0606400-02
Chr11	irgsp1_rep	CDS	23406341	23406960	.	-	0	Parent=Os11t0606400-02
Chr11	irgsp1_rep	CDS	23404012	23406211	.	-	1	Parent=Os11t0606400-02
Chr11	irgsp1_rep	three_prime_UTR	23403841	23404011	.	-	.	Parent=Os11t0606400-02
Chr11	irgsp1_rep	three_prime_UTR	23403454	23403757	.	-	.	Parent=Os11t0606400-02
Chr11	irgsp1_rep	mRNA	23409062	23413029	.	+	.	ID=Os11t0606500-01;Name=Os11t0606500-01;Locus_id=Os11g0606500;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=AK065351 (DDBJ%2C Best hit);ORF_evidence=Q2R1F8 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013020O22;TENOR=Os11t0606500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	23409062	23409062	.	+	.	Parent=Os11t0606500-01
Chr11	irgsp1_rep	CDS	23409063	23409979	.	+	0	Parent=Os11t0606500-01
Chr11	irgsp1_rep	CDS	23410674	23412819	.	+	1	Parent=Os11t0606500-01
Chr11	irgsp1_rep	three_prime_UTR	23412820	23413029	.	+	.	Parent=Os11t0606500-01
Chr11	irgsp1_rep	mRNA	23410533	23414136	.	-	.	ID=Os11t0606600-01;Name=Os11t0606600-01;Locus_id=Os11g0606600;Note=Hypothetical protein.;Transcript_evidence=AK105448 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-125-B08;Expression=AK105448;TENOR=Os11t0606600-01;KEGG=Os11t0606600-01
Chr11	irgsp1_rep	five_prime_UTR	23413881	23414136	.	-	.	Parent=Os11t0606600-01
Chr11	irgsp1_rep	five_prime_UTR	23411470	23412697	.	-	.	Parent=Os11t0606600-01
Chr11	irgsp1_rep	CDS	23411079	23411469	.	-	0	Parent=Os11t0606600-01
Chr11	irgsp1_rep	CDS	23410985	23410992	.	-	2	Parent=Os11t0606600-01
Chr11	irgsp1_rep	three_prime_UTR	23410533	23410984	.	-	.	Parent=Os11t0606600-01
Chr11	irgsp1_rep	mRNA	23415625	23418653	.	-	.	ID=Os11t0606800-00;Name=Os11t0606800-00;Locus_id=Os11g0606800;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=AK369048 (DDBJ);ORF_evidence=Q2R1F7 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os11t0606800-00
Chr11	irgsp1_rep	CDS	23417824	23418653	.	-	0	Parent=Os11t0606800-00
Chr11	irgsp1_rep	CDS	23415625	23417692	.	-	1	Parent=Os11t0606800-00
Chr11	irgsp1_rep	mRNA	23422633	23423958	.	+	.	ID=Os11t0606900-00;Name=Os11t0606900-00;Locus_id=Os11g0606900;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R1F8 (UniProt);TENOR=Os11t0606900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	23422633	23423958	.	+	0	Parent=Os11t0606900-00
Chr11	irgsp1_rep	mRNA	23421851	23426690	.	-	.	ID=Os11t0607000-01;Name=Os11t0607000-01;Locus_id=Os11g0607000;Note=Hypothetical protein.;Transcript_evidence=AK073861 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033071G16;Expression=AK073861;TENOR=Os11t0607000-01;KEGG=Os11t0607000-01
Chr11	irgsp1_rep	five_prime_UTR	23426523	23426690	.	-	.	Parent=Os11t0607000-01
Chr11	irgsp1_rep	five_prime_UTR	23426269	23426401	.	-	.	Parent=Os11t0607000-01
Chr11	irgsp1_rep	five_prime_UTR	23425933	23426080	.	-	.	Parent=Os11t0607000-01
Chr11	irgsp1_rep	five_prime_UTR	23422774	23423799	.	-	.	Parent=Os11t0607000-01
Chr11	irgsp1_rep	CDS	23422186	23422773	.	-	0	Parent=Os11t0607000-01
Chr11	irgsp1_rep	three_prime_UTR	23421851	23422185	.	-	.	Parent=Os11t0607000-01
Chr11	irgsp1_rep	mRNA	23427261	23429925	.	+	.	ID=Os11t0607100-01;Name=Os11t0607100-01;Locus_id=Os11g0607100;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK067872 (DDBJ%2C Best hit);ORF_evidence=A2ZRT4 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013123O18;Expression=AK067872;TENOR=Os11t0607100-01;KEGG=Os11t0607100-01
Chr11	irgsp1_rep	five_prime_UTR	23427261	23427282	.	+	.	Parent=Os11t0607100-01
Chr11	irgsp1_rep	CDS	23427283	23429298	.	+	0	Parent=Os11t0607100-01
Chr11	irgsp1_rep	three_prime_UTR	23429299	23429370	.	+	.	Parent=Os11t0607100-01
Chr11	irgsp1_rep	three_prime_UTR	23429536	23429666	.	+	.	Parent=Os11t0607100-01
Chr11	irgsp1_rep	three_prime_UTR	23429750	23429925	.	+	.	Parent=Os11t0607100-01
Chr11	irgsp1_rep	mRNA	23431233	23436723	.	-	.	ID=Os11t0607200-01;Name=Os11t0607200-01;Locus_id=Os11g0607200;Oryzabase Gene Symbol Synonym(s)=OsSERL1%2C OsBAK1-8;Oryzabase Gene Name Synonym(s)=SERK-like gene 1%2C bri1-associated receptor kinase 1 (BAK1) homologue 8;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK111536 (DDBJ%2C Best hit);ORF_evidence=NP_001146903.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013031I11;Oryzabase=13024;Expression=AK111536;TENOR=Os11t0607200-01;KEGG=Os11t0607200-01
Chr11	irgsp1_rep	five_prime_UTR	23436634	23436723	.	-	.	Parent=Os11t0607200-01
Chr11	irgsp1_rep	five_prime_UTR	23435554	23435676	.	-	.	Parent=Os11t0607200-01
Chr11	irgsp1_rep	CDS	23435484	23435553	.	-	0	Parent=Os11t0607200-01
Chr11	irgsp1_rep	CDS	23434830	23434962	.	-	2	Parent=Os11t0607200-01
Chr11	irgsp1_rep	CDS	23434428	23434499	.	-	1	Parent=Os11t0607200-01
Chr11	irgsp1_rep	CDS	23434179	23434322	.	-	1	Parent=Os11t0607200-01
Chr11	irgsp1_rep	CDS	23434006	23434077	.	-	1	Parent=Os11t0607200-01
Chr11	irgsp1_rep	CDS	23433840	23433905	.	-	1	Parent=Os11t0607200-01
Chr11	irgsp1_rep	CDS	23433700	23433767	.	-	1	Parent=Os11t0607200-01
Chr11	irgsp1_rep	CDS	23433485	23433619	.	-	2	Parent=Os11t0607200-01
Chr11	irgsp1_rep	CDS	23432997	23433344	.	-	2	Parent=Os11t0607200-01
Chr11	irgsp1_rep	CDS	23432318	23432712	.	-	2	Parent=Os11t0607200-01
Chr11	irgsp1_rep	CDS	23431702	23432025	.	-	0	Parent=Os11t0607200-01
Chr11	irgsp1_rep	three_prime_UTR	23431233	23431701	.	-	.	Parent=Os11t0607200-01
Chr11	irgsp1_rep	mRNA	23431333	23434055	.	-	.	ID=Os11t0607200-02;Name=Os11t0607200-02;Locus_id=Os11g0607200;Oryzabase Gene Symbol Synonym(s)=OsSERL1%2C OsBAK1-8;Oryzabase Gene Name Synonym(s)=SERK-like gene 1%2C bri1-associated receptor kinase 1 (BAK1) homologue 8;Note=Similar to Brassinosteroid insensitive1-associated receptor kinase 1.;Transcript_evidence=AK111998 (DDBJ%2C Best hit);ORF_evidence=NP_001146903.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-034-E01;Oryzabase=13024;Expression=AK111998;TENOR=Os11t0607200-02;KEGG=Os11t0607200-02
Chr11	irgsp1_rep	CDS	23434006	23434055	.	-	0	Parent=Os11t0607200-02
Chr11	irgsp1_rep	CDS	23433840	23433905	.	-	1	Parent=Os11t0607200-02
Chr11	irgsp1_rep	CDS	23433700	23433767	.	-	1	Parent=Os11t0607200-02
Chr11	irgsp1_rep	CDS	23433485	23433619	.	-	2	Parent=Os11t0607200-02
Chr11	irgsp1_rep	CDS	23432997	23433344	.	-	2	Parent=Os11t0607200-02
Chr11	irgsp1_rep	CDS	23432318	23432712	.	-	2	Parent=Os11t0607200-02
Chr11	irgsp1_rep	CDS	23431702	23432025	.	-	0	Parent=Os11t0607200-02
Chr11	irgsp1_rep	three_prime_UTR	23431333	23431701	.	-	.	Parent=Os11t0607200-02
Chr11	irgsp1_rep	mRNA	23459658	23475516	.	-	.	ID=Os11t0607900-01;Name=Os11t0607900-01;Locus_id=Os11g0607900;CGSNL Gene Symbol=RLCK336;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 336;Oryzabase Gene Symbol Synonym(s)=OsRLCK336;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 336;Note=Hypothetical conserved gene.;Transcript_evidence=AK241609 (DDBJ%2C Best hit);ORF_evidence=Q2R1E7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Mannose-binding lectin (IPR001229),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J065185L18;Oryzabase=19006;TENOR=Os11t0607900-01;KEGG=Os11t0607900-01 (EC:2.7.11.1)
Chr11	irgsp1_rep	five_prime_UTR	23475472	23475516	.	-	.	Parent=Os11t0607900-01
Chr11	irgsp1_rep	five_prime_UTR	23466088	23466109	.	-	.	Parent=Os11t0607900-01
Chr11	irgsp1_rep	CDS	23465986	23466087	.	-	0	Parent=Os11t0607900-01
Chr11	irgsp1_rep	CDS	23465145	23465403	.	-	0	Parent=Os11t0607900-01
Chr11	irgsp1_rep	CDS	23464757	23464985	.	-	2	Parent=Os11t0607900-01
Chr11	irgsp1_rep	CDS	23464491	23464641	.	-	1	Parent=Os11t0607900-01
Chr11	irgsp1_rep	CDS	23464040	23464243	.	-	0	Parent=Os11t0607900-01
Chr11	irgsp1_rep	CDS	23463013	23463219	.	-	0	Parent=Os11t0607900-01
Chr11	irgsp1_rep	CDS	23462262	23462534	.	-	0	Parent=Os11t0607900-01
Chr11	irgsp1_rep	three_prime_UTR	23461981	23462261	.	-	.	Parent=Os11t0607900-01
Chr11	irgsp1_rep	three_prime_UTR	23461263	23461526	.	-	.	Parent=Os11t0607900-01
Chr11	irgsp1_rep	three_prime_UTR	23460275	23460478	.	-	.	Parent=Os11t0607900-01
Chr11	irgsp1_rep	three_prime_UTR	23459658	23460181	.	-	.	Parent=Os11t0607900-01
Chr11	irgsp1_rep	mRNA	23467539	23471956	.	+	.	ID=Os11t0608000-01;Name=Os11t0608000-01;Locus_id=Os11g0608000;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK068694 (DDBJ%2C Best hit);ORF_evidence=Q654I1 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013162M01;TENOR=Os11t0608000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	23467539	23467711	.	+	.	Parent=Os11t0608000-01
Chr11	irgsp1_rep	five_prime_UTR	23469088	23469693	.	+	.	Parent=Os11t0608000-01
Chr11	irgsp1_rep	CDS	23469694	23470077	.	+	0	Parent=Os11t0608000-01
Chr11	irgsp1_rep	three_prime_UTR	23470078	23471956	.	+	.	Parent=Os11t0608000-01
Chr11	irgsp1_rep	mRNA	23488663	23496012	.	+	.	ID=Os11t0608300-01;Name=Os11t0608300-01;Locus_id=Os11g0608300;CGSNL Gene Symbol=RLCK337;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 337;Oryzabase Gene Symbol Synonym(s)=OsRLCK337;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 337;Note=Barley stem rust resistance protein.;Transcript_evidence=AK243235 (DDBJ%2C Best hit);ORF_evidence=Q2R1E4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: structural molecule activity (GO:0005198),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Major sperm protein (IPR000535),Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),PapD-like (IPR008962),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J100045H04;Oryzabase=19007;TENOR=Os11t0608300-01;KEGG=Os11t0608300-01
Chr11	irgsp1_rep	five_prime_UTR	23488663	23488791	.	+	.	Parent=Os11t0608300-01
Chr11	irgsp1_rep	five_prime_UTR	23490396	23490445	.	+	.	Parent=Os11t0608300-01
Chr11	irgsp1_rep	CDS	23490446	23490562	.	+	0	Parent=Os11t0608300-01
Chr11	irgsp1_rep	CDS	23492059	23492317	.	+	0	Parent=Os11t0608300-01
Chr11	irgsp1_rep	CDS	23492401	23492629	.	+	2	Parent=Os11t0608300-01
Chr11	irgsp1_rep	CDS	23494075	23494225	.	+	1	Parent=Os11t0608300-01
Chr11	irgsp1_rep	CDS	23494343	23494543	.	+	0	Parent=Os11t0608300-01
Chr11	irgsp1_rep	CDS	23495358	23495771	.	+	0	Parent=Os11t0608300-01
Chr11	irgsp1_rep	three_prime_UTR	23495772	23496012	.	+	.	Parent=Os11t0608300-01
Chr11	irgsp1_rep	mRNA	23492074	23495767	.	-	.	ID=Os11t0608500-00;Name=Os11t0608500-00;Locus_id=Os11g0608500;Note=Non-protein coding transcript.;Transcript_evidence=tplb0060i13 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os11t0608500-00
Chr11	irgsp1_rep	exon	23495326	23495767	.	-	.	Parent=Os11t0608500-00
Chr11	irgsp1_rep	exon	23494314	23494534	.	-	.	Parent=Os11t0608500-00
Chr11	irgsp1_rep	exon	23494068	23494202	.	-	.	Parent=Os11t0608500-00
Chr11	irgsp1_rep	exon	23492421	23492627	.	-	.	Parent=Os11t0608500-00
Chr11	irgsp1_rep	exon	23492074	23492337	.	-	.	Parent=Os11t0608500-00
Chr11	irgsp1_rep	mRNA	23511523	23513127	.	-	.	ID=Os11t0608700-00;Name=Os11t0608700-00;Locus_id=Os11g0608700;CGSNL Gene Symbol=RLCK338;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 338;Oryzabase Gene Symbol Synonym(s)=OsRLCK338;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 338;Note=Similar to Jacalin-like lectin domain containing protein.;Transcript_evidence=tplb0046e02 (Wheat FLcDNA);ORF_evidence=Q2R1E0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=19008;TENOR=Os11t0608700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	23512996	23513127	.	-	0	Parent=Os11t0608700-00
Chr11	irgsp1_rep	CDS	23512667	23512922	.	-	0	Parent=Os11t0608700-00
Chr11	irgsp1_rep	CDS	23512305	23512536	.	-	2	Parent=Os11t0608700-00
Chr11	irgsp1_rep	CDS	23511886	23512036	.	-	1	Parent=Os11t0608700-00
Chr11	irgsp1_rep	CDS	23511523	23511783	.	-	0	Parent=Os11t0608700-00
Chr11	irgsp1_rep	mRNA	23540796	23548581	.	-	.	ID=Os11t0609500-01;Name=Os11t0609500-01;Locus_id=Os11g0609500;CGSNL Gene Symbol=RLCK339;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 339;Oryzabase Gene Symbol Synonym(s)=OsRLCK339;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 339;Note=Similar to Jacalin-like lectin domain containing protein.;Transcript_evidence=AK243516 (DDBJ%2C Best hit);ORF_evidence=Q2R1E0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J100075F12;Oryzabase=19009;TENOR=Os11t0609500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	23548530	23548581	.	-	.	Parent=Os11t0609500-01
Chr11	irgsp1_rep	five_prime_UTR	23545425	23545535	.	-	.	Parent=Os11t0609500-01
Chr11	irgsp1_rep	CDS	23545392	23545424	.	-	0	Parent=Os11t0609500-01
Chr11	irgsp1_rep	CDS	23544212	23544470	.	-	0	Parent=Os11t0609500-01
Chr11	irgsp1_rep	CDS	23543620	23543735	.	-	2	Parent=Os11t0609500-01
Chr11	irgsp1_rep	three_prime_UTR	23543502	23543619	.	-	.	Parent=Os11t0609500-01
Chr11	irgsp1_rep	three_prime_UTR	23543214	23543364	.	-	.	Parent=Os11t0609500-01
Chr11	irgsp1_rep	three_prime_UTR	23542889	23543143	.	-	.	Parent=Os11t0609500-01
Chr11	irgsp1_rep	three_prime_UTR	23540796	23540857	.	-	.	Parent=Os11t0609500-01
Chr11	irgsp1_rep	mRNA	23553177	23558494	.	-	.	ID=Os11t0609600-01;Name=Os11t0609600-01;Locus_id=Os11g0609600;CGSNL Gene Symbol=GF14H;CGSNL Gene Name=G-BOX FACTOR 14-3-3H PROTEIN;Oryzabase Gene Symbol Synonym(s)=GF14h%2C OsGF14h%2C 14-3-3h;Oryzabase Gene Name Synonym(s)=G-box factor 14-3-3h protein;Note=Similar to 14-3-3-like protein.;Transcript_evidence=AK072443 (DDBJ%2C Best hit);ORF_evidence=NP_001149445.1 (RefSeq);GO=Molecular Function: protein domain specific binding (GO:0019904);InterPro=14-3-3 protein (IPR000308),14-3-3 domain (IPR023410);NIAS_FLcDNA=J023109G22;Oryzabase=11414;TENOR=Os11t0609600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	23558465	23558494	.	-	.	Parent=Os11t0609600-01
Chr11	irgsp1_rep	CDS	23558401	23558464	.	-	0	Parent=Os11t0609600-01
Chr11	irgsp1_rep	CDS	23556535	23557073	.	-	2	Parent=Os11t0609600-01
Chr11	irgsp1_rep	three_prime_UTR	23555403	23556534	.	-	.	Parent=Os11t0609600-01
Chr11	irgsp1_rep	three_prime_UTR	23555201	23555306	.	-	.	Parent=Os11t0609600-01
Chr11	irgsp1_rep	three_prime_UTR	23554686	23554828	.	-	.	Parent=Os11t0609600-01
Chr11	irgsp1_rep	three_prime_UTR	23553901	23553935	.	-	.	Parent=Os11t0609600-01
Chr11	irgsp1_rep	three_prime_UTR	23553177	23553565	.	-	.	Parent=Os11t0609600-01
Chr11	irgsp1_rep	mRNA	23564664	23564726	.	-	.	ID=Os11t0609650-00;Name=Os11t0609650-00;Locus_id=Os11g0609650;Note=Non-protein coding transcript.;Transcript_evidence=EU943375 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0609650-00
Chr11	irgsp1_rep	exon	23564664	23564726	.	-	.	Parent=Os11t0609650-00
Chr11	irgsp1_rep	mRNA	23565332	23575502	.	-	.	ID=Os11t0609700-00;Name=Os11t0609700-00;Locus_id=Os11g0609700;Note=Disease resistance protein domain containing protein.;Transcript_evidence=AK361342 (DDBJ);ORF_evidence=F2DNR6 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os11t0609700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	23574624	23575502	.	-	.	Parent=Os11t0609700-00
Chr11	irgsp1_rep	CDS	23574458	23574623	.	-	0	Parent=Os11t0609700-00
Chr11	irgsp1_rep	CDS	23569241	23569809	.	-	2	Parent=Os11t0609700-00
Chr11	irgsp1_rep	CDS	23566256	23566651	.	-	0	Parent=Os11t0609700-00
Chr11	irgsp1_rep	three_prime_UTR	23565701	23566255	.	-	.	Parent=Os11t0609700-00
Chr11	irgsp1_rep	three_prime_UTR	23565332	23565629	.	-	.	Parent=Os11t0609700-00
Chr11	irgsp1_rep	mRNA	23574713	23575575	.	+	.	ID=Os11t0609760-00;Name=Os11t0609760-00;Locus_id=Os11g0609760;Note=Non-protein coding transcript.;Transcript_evidence=FP099851 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0609760-00
Chr11	irgsp1_rep	exon	23574713	23575575	.	+	.	Parent=Os11t0609760-00
Chr11	irgsp1_rep	mRNA	23585674	23595238	.	-	.	ID=Os11t0610000-00;Name=Os11t0610000-00;Locus_id=Os11g0610000;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=AK371254 (DDBJ);ORF_evidence=Q2R1D4 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os11t0610000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	23595041	23595238	.	-	.	Parent=Os11t0610000-00
Chr11	irgsp1_rep	CDS	23594098	23595040	.	-	0	Parent=Os11t0610000-00
Chr11	irgsp1_rep	CDS	23589505	23589521	.	-	2	Parent=Os11t0610000-00
Chr11	irgsp1_rep	three_prime_UTR	23589024	23589504	.	-	.	Parent=Os11t0610000-00
Chr11	irgsp1_rep	three_prime_UTR	23585674	23586434	.	-	.	Parent=Os11t0610000-00
Chr11	irgsp1_rep	mRNA	23594495	23595357	.	+	.	ID=Os11t0610120-00;Name=Os11t0610120-00;Locus_id=Os11g0610120;Note=Non-protein coding transcript.;Transcript_evidence=FP099851 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0610120-00
Chr11	irgsp1_rep	exon	23594495	23595357	.	+	.	Parent=Os11t0610120-00
Chr11	irgsp1_rep	mRNA	23610705	23612241	.	+	.	ID=Os11t0610600-00;Name=Os11t0610600-00;Locus_id=Os11g0610600;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=BT055245 (DDBJ);ORF_evidence=NP_001068263.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os11t0610600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	23610705	23611304	.	+	0	Parent=Os11t0610600-00
Chr11	irgsp1_rep	CDS	23611432	23612241	.	+	0	Parent=Os11t0610600-00
Chr11	irgsp1_rep	mRNA	23610985	23611907	.	-	.	ID=Os11t0610650-00;Name=Os11t0610650-00;Locus_id=Os11g0610650;Note=Hypothetical protein.;Transcript_evidence=BT064098 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0610650-00
Chr11	irgsp1_rep	five_prime_UTR	23611773	23611907	.	-	.	Parent=Os11t0610650-00
Chr11	irgsp1_rep	CDS	23611635	23611772	.	-	0	Parent=Os11t0610650-00
Chr11	irgsp1_rep	CDS	23610985	23611338	.	-	0	Parent=Os11t0610650-00
Chr11	irgsp1_rep	mRNA	23615076	23619274	.	-	.	ID=Os11t0610700-01;Name=Os11t0610700-01;Locus_id=Os11g0610700;Oryzabase Gene Symbol Synonym(s)=OsWD40-190;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK099760 (DDBJ%2C Best hit);ORF_evidence=B6TCV1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781);NIAS_FLcDNA=J013093M02;Oryzabase=10871;Expression=AK099760;TENOR=Os11t0610700-01;KEGG=Os11t0610700-01
Chr11	irgsp1_rep	five_prime_UTR	23619230	23619274	.	-	.	Parent=Os11t0610700-01
Chr11	irgsp1_rep	CDS	23618936	23619229	.	-	0	Parent=Os11t0610700-01
Chr11	irgsp1_rep	CDS	23618734	23618828	.	-	0	Parent=Os11t0610700-01
Chr11	irgsp1_rep	CDS	23617550	23617700	.	-	1	Parent=Os11t0610700-01
Chr11	irgsp1_rep	CDS	23616560	23616651	.	-	0	Parent=Os11t0610700-01
Chr11	irgsp1_rep	CDS	23616372	23616471	.	-	1	Parent=Os11t0610700-01
Chr11	irgsp1_rep	CDS	23616208	23616283	.	-	0	Parent=Os11t0610700-01
Chr11	irgsp1_rep	CDS	23616000	23616120	.	-	2	Parent=Os11t0610700-01
Chr11	irgsp1_rep	CDS	23615778	23615894	.	-	1	Parent=Os11t0610700-01
Chr11	irgsp1_rep	CDS	23615618	23615685	.	-	1	Parent=Os11t0610700-01
Chr11	irgsp1_rep	CDS	23615433	23615533	.	-	2	Parent=Os11t0610700-01
Chr11	irgsp1_rep	three_prime_UTR	23615076	23615432	.	-	.	Parent=Os11t0610700-01
Chr11	irgsp1_rep	mRNA	23628184	23632584	.	+	.	ID=Os11t0610900-01;Name=Os11t0610900-01;Locus_id=Os11g0610900;RAP-DB Gene Symbol Synonym(s)=TSCD11;RAP-DB Gene Name Synonym(s)=temperature-sensitive chlorophyll-deficient 11;Note=Seryl-tRNA synthetase%2C Early chloroplast development at high temperature;Transcript_evidence=AK106831;ORF_evidence=Q2R1C1;GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: seryl-tRNA aminoacylation (GO:0006434),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: serine-tRNA ligase activity (GO:0004828),Molecular Function: ATP binding (GO:0005524);InterPro=Serine-tRNA synthetase%2C type1%2C N-terminal domain superfamily (IPR042103),Class I and II aminoacyl-tRNA synthetase%2C tRNA-binding arm (IPR010978),Serine-tRNA ligase%2C type1 (IPR002317),Serine-tRNA synthetase%2C type1%2C N-terminal (IPR015866),Aminoacyl-tRNA synthetase%2C class II (IPR006195),Aminoacyl-tRNA synthetase%2C class II (G/ P/ S/T) (IPR002314),Serine-tRNA ligase catalytic core domain (IPR033729);NIAS_FLcDNA=002-116-F09;Manual Curation=July 20%2C 2020;Literature_PMID=32681435;Expression=AK106831;TENOR=Os11t0610900-01;KEGG=Os11t0610900-01 (EC:6.1.1.11);Subcellular location=chloroplast (GO:0009507)
Chr11	irgsp1_rep	five_prime_UTR	23628184	23628280	.	+	.	Parent=Os11t0610900-01
Chr11	irgsp1_rep	CDS	23628281	23628449	.	+	0	Parent=Os11t0610900-01
Chr11	irgsp1_rep	CDS	23628540	23628706	.	+	2	Parent=Os11t0610900-01
Chr11	irgsp1_rep	CDS	23629574	23629667	.	+	0	Parent=Os11t0610900-01
Chr11	irgsp1_rep	CDS	23629759	23629907	.	+	2	Parent=Os11t0610900-01
Chr11	irgsp1_rep	CDS	23629986	23630078	.	+	0	Parent=Os11t0610900-01
Chr11	irgsp1_rep	CDS	23630272	23630451	.	+	0	Parent=Os11t0610900-01
Chr11	irgsp1_rep	CDS	23630775	23630941	.	+	0	Parent=Os11t0610900-01
Chr11	irgsp1_rep	CDS	23631216	23631350	.	+	1	Parent=Os11t0610900-01
Chr11	irgsp1_rep	CDS	23631422	23631515	.	+	1	Parent=Os11t0610900-01
Chr11	irgsp1_rep	CDS	23631603	23631884	.	+	0	Parent=Os11t0610900-01
Chr11	irgsp1_rep	three_prime_UTR	23631885	23632584	.	+	.	Parent=Os11t0610900-01
Chr11	irgsp1_rep	mRNA	23628195	23632070	.	+	.	ID=Os11t0610900-02;Name=Os11t0610900-02;Locus_id=Os11g0610900;CGSNL Gene Symbol=TSCD11;CGSNL Gene Name=TEMPERATURE-SENSITIVE CHLOROPHYLL-DEFICIENT 11;Oryzabase Gene Symbol Synonym(s)=OsTSCD11;Oryzabase Gene Name Synonym(s)=temperature-sensitive chlorophyll-deficient 11;Note=Hypothetical conserved gene.;Transcript_evidence=AK100567 (DDBJ%2C Best hit);ORF_evidence=Q2R1C2 (UniProt);GO=Biological Process: seryl-tRNA aminoacylation (GO:0006434),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: serine-tRNA ligase activity (GO:0004828),Molecular Function: ATP binding (GO:0005524);InterPro=Seryl-tRNA synthetase%2C class IIa (IPR002317),tRNA-binding arm (IPR010978),Seryl-tRNA synthetase%2C class IIa%2C N-terminal (IPR015866);NIAS_FLcDNA=J023104M20;Oryzabase=23744;Expression=AK100567;TENOR=Os11t0610900-02;KEGG=Os11t0610900-02 (EC:6.1.1.11)
Chr11	irgsp1_rep	five_prime_UTR	23628195	23628280	.	+	.	Parent=Os11t0610900-02
Chr11	irgsp1_rep	CDS	23628281	23628449	.	+	0	Parent=Os11t0610900-02
Chr11	irgsp1_rep	CDS	23628540	23628706	.	+	2	Parent=Os11t0610900-02
Chr11	irgsp1_rep	CDS	23629574	23629667	.	+	0	Parent=Os11t0610900-02
Chr11	irgsp1_rep	CDS	23629759	23629907	.	+	2	Parent=Os11t0610900-02
Chr11	irgsp1_rep	CDS	23629986	23630078	.	+	0	Parent=Os11t0610900-02
Chr11	irgsp1_rep	CDS	23630272	23630460	.	+	0	Parent=Os11t0610900-02
Chr11	irgsp1_rep	three_prime_UTR	23630461	23630941	.	+	.	Parent=Os11t0610900-02
Chr11	irgsp1_rep	three_prime_UTR	23631216	23631350	.	+	.	Parent=Os11t0610900-02
Chr11	irgsp1_rep	three_prime_UTR	23631422	23631515	.	+	.	Parent=Os11t0610900-02
Chr11	irgsp1_rep	three_prime_UTR	23631603	23632070	.	+	.	Parent=Os11t0610900-02
Chr11	irgsp1_rep	mRNA	23635337	23636133	.	+	.	ID=Os11t0611100-00;Name=Os11t0611100-00;Locus_id=Os11g0611100;Note=Hypothetical conserved gene.;Transcript_evidence=CT835690 (DDBJ%2C Best hit);ORF_evidence=Q2R1C0 (UniProt);TENOR=Os11t0611100-00;KEGG=Os11t0611100-00
Chr11	irgsp1_rep	five_prime_UTR	23635337	23635473	.	+	.	Parent=Os11t0611100-00
Chr11	irgsp1_rep	CDS	23635474	23636013	.	+	0	Parent=Os11t0611100-00
Chr11	irgsp1_rep	three_prime_UTR	23636014	23636133	.	+	.	Parent=Os11t0611100-00
Chr11	irgsp1_rep	mRNA	23661546	23664304	.	+	.	ID=Os11t0611600-01;Name=Os11t0611600-01;Locus_id=Os11g0611600;Note=Hypothetical protein.;Transcript_evidence=CT834275 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os11t0611600-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	23661546	23661751	.	+	0	Parent=Os11t0611600-01
Chr11	irgsp1_rep	CDS	23661854	23661921	.	+	1	Parent=Os11t0611600-01
Chr11	irgsp1_rep	CDS	23663522	23663556	.	+	2	Parent=Os11t0611600-01
Chr11	irgsp1_rep	three_prime_UTR	23663557	23663677	.	+	.	Parent=Os11t0611600-01
Chr11	irgsp1_rep	three_prime_UTR	23663942	23664304	.	+	.	Parent=Os11t0611600-01
Chr11	irgsp1_rep	mRNA	23735475	23736432	.	-	.	ID=Os11t0612950-00;Name=Os11t0612950-00;Locus_id=Os11g0612950;Note=Similar to AtPPa1 (Arabidopsis thaliana pyrophosphorylase 1)%3B inorganic diphosphatase.;Transcript_evidence=AK249194 (DDBJ);ORF_evidence=NP_171613.1 (RefSeq);GO=Biological Process: phosphate-containing compound metabolic process (GO:0006796),Cellular Component: cytoplasm (GO:0005737),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: inorganic diphosphatase activity (GO:0004427);InterPro=Inorganic pyrophosphatase (IPR008162);TENOR=Os11t0612950-00
Chr11	irgsp1_rep	CDS	23736276	23736432	.	-	0	Parent=Os11t0612950-00
Chr11	irgsp1_rep	CDS	23735685	23735770	.	-	2	Parent=Os11t0612950-00
Chr11	irgsp1_rep	three_prime_UTR	23735475	23735684	.	-	.	Parent=Os11t0612950-00
Chr11	irgsp1_rep	mRNA	23802873	23803362	.	-	.	ID=Os11t0613950-00;Name=Os11t0613950-00;Locus_id=Os11g0613950;Note=Non-protein coding transcript.;Transcript_evidence=DQ246094 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0613950-00
Chr11	irgsp1_rep	exon	23802873	23803362	.	-	.	Parent=Os11t0613950-00
Chr11	irgsp1_rep	mRNA	23844616	23848520	.	+	.	ID=Os11t0614400-01;Name=Os11t0614400-01;Locus_id=Os11g0614400;Oryzabase Gene Symbol Synonym(s)=OspPLAIItheta%2C pPLAIItheta;Oryzabase Gene Name Synonym(s)=Patatin-related phospholipase A II theta;Note=Similar to Patatin-like protein 1.;Transcript_evidence=AK058531 (DDBJ%2C Best hit);ORF_evidence=NP_001151996.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: metabolic process (GO:0008152);InterPro=Patatin/Phospholipase A2-related (IPR002641),Acyl transferase/acyl hydrolase/lysophospholipase (IPR016035);NIAS_FLcDNA=001-017-A08;Oryzabase=19867;Expression=AK058531;TENOR=Os11t0614400-01;KEGG=Os11t0614400-01
Chr11	irgsp1_rep	five_prime_UTR	23844616	23844808	.	+	.	Parent=Os11t0614400-01
Chr11	irgsp1_rep	CDS	23844809	23844985	.	+	0	Parent=Os11t0614400-01
Chr11	irgsp1_rep	CDS	23845351	23845532	.	+	0	Parent=Os11t0614400-01
Chr11	irgsp1_rep	CDS	23846569	23846923	.	+	1	Parent=Os11t0614400-01
Chr11	irgsp1_rep	CDS	23847160	23847462	.	+	0	Parent=Os11t0614400-01
Chr11	irgsp1_rep	CDS	23848113	23848349	.	+	0	Parent=Os11t0614400-01
Chr11	irgsp1_rep	three_prime_UTR	23848350	23848520	.	+	.	Parent=Os11t0614400-01
Chr11	irgsp1_rep	mRNA	23852063	23853995	.	+	.	ID=Os11t0614500-01;Name=Os11t0614500-01;Locus_id=Os11g0614500;Oryzabase Gene Symbol Synonym(s)=OspPLAIIiota%2C pPLAIIiota;Oryzabase Gene Name Synonym(s)=Patatin-related phospholipase A II iota;Note=Similar to Patatin-like protein.;Transcript_evidence=AK109768 (DDBJ%2C Best hit);ORF_evidence=Q9XE79 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: metabolic process (GO:0008152);InterPro=Patatin/Phospholipase A2-related (IPR002641),Acyl transferase/acyl hydrolase/lysophospholipase (IPR016035);NIAS_FLcDNA=002-147-A03;Oryzabase=19868;TENOR=Os11t0614500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	23852063	23853668	.	+	.	Parent=Os11t0614500-01
Chr11	irgsp1_rep	CDS	23853669	23853893	.	+	0	Parent=Os11t0614500-01
Chr11	irgsp1_rep	three_prime_UTR	23853894	23853995	.	+	.	Parent=Os11t0614500-01
Chr11	irgsp1_rep	mRNA	23852139	23860876	.	+	.	ID=Os11t0614500-02;Name=Os11t0614500-02;Locus_id=Os11g0614500;Oryzabase Gene Symbol Synonym(s)=OspPLAIIiota%2C pPLAIIiota;Oryzabase Gene Name Synonym(s)=Patatin-related phospholipase A II iota;Note=Similar to Patatin-like protein.;Transcript_evidence=AK067827 (DDBJ%2C Best hit);ORF_evidence=Q9XE75 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: metabolic process (GO:0008152);InterPro=Patatin/Phospholipase A2-related (IPR002641),Acyl transferase/acyl hydrolase/lysophospholipase (IPR016035);NIAS_FLcDNA=J013120O20;Oryzabase=19868;TENOR=Os11t0614500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	23852139	23852188	.	+	.	Parent=Os11t0614500-02
Chr11	irgsp1_rep	CDS	23852189	23852365	.	+	0	Parent=Os11t0614500-02
Chr11	irgsp1_rep	CDS	23853678	23853859	.	+	0	Parent=Os11t0614500-02
Chr11	irgsp1_rep	CDS	23858853	23859231	.	+	1	Parent=Os11t0614500-02
Chr11	irgsp1_rep	three_prime_UTR	23859232	23860876	.	+	.	Parent=Os11t0614500-02
Chr11	irgsp1_rep	mRNA	23866154	23867484	.	+	.	ID=Os11t0614800-01;Name=Os11t0614800-01;Locus_id=Os11g0614800;RAP-DB Gene Symbol Synonym(s)=Orysa%3BKRP3;RAP-DB Gene Name Synonym(s)=Kip-related protein 3;CGSNL Gene Symbol=KRP3;CGSNL Gene Name=KIP-RELATED PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsiICK3%2C Orysa%3BKRP3%2C OrysaICK3%2C Orysa%3BICK3;Oryzabase Gene Name Synonym(s)=Cyclin-dependent kinase inhibitor 3%2C KIP-related protein 3%2C inhibitor of cyclin-dependent kinase 3;Note=Cyclin-dependent kinase inhibitor%2C Cell cycle control of syncytial endosperm;Transcript_evidence=AB591742;ORF_evidence=E1CPV3;GO=Biological Process: cell cycle arrest (GO:0007050),Molecular Function: cyclin-dependent protein serine/threonine kinase inhibitor activity (GO:0004861),Cellular Component: nucleus (GO:0005634);InterPro=Cyclin-dependent kinase inhibitor (IPR003175);Manual Curation=November 4%2C 2020;Literature_PMID=19933315;Oryzabase=12356;TENOR=Os11t0614800-00;KEGG=Os11t0614800-00
Chr11	irgsp1_rep	five_prime_UTR	23866154	23866174	.	+	.	Parent=Os11t0614800-01
Chr11	irgsp1_rep	CDS	23866175	23866566	.	+	0	Parent=Os11t0614800-01
Chr11	irgsp1_rep	CDS	23866809	23866991	.	+	1	Parent=Os11t0614800-01
Chr11	irgsp1_rep	CDS	23867130	23867199	.	+	1	Parent=Os11t0614800-01
Chr11	irgsp1_rep	three_prime_UTR	23867200	23867484	.	+	.	Parent=Os11t0614800-01
Chr11	irgsp1_rep	mRNA	23866175	23867908	.	+	.	ID=Os11t0614800-02;Name=Os11t0614800-02;Locus_id=Os11g0614800;RAP-DB Gene Symbol Synonym(s)=Orysa%3BKRP3;RAP-DB Gene Name Synonym(s)=Kip-related protein 3;CGSNL Gene Symbol=KRP3;CGSNL Gene Name=KIP-RELATED PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsiICK3%2C Orysa%3BKRP3%2C OrysaICK3%2C Orysa%3BICK3;Oryzabase Gene Name Synonym(s)=Cyclin-dependent kinase inhibitor 3%2C KIP-related protein 3%2C inhibitor of cyclin-dependent kinase 3;Note=Cyclin-dependent kinase inhibitor;Transcript_evidence=DQ229364;ORF_evidence=Q2R185;GO=Biological Process: cell cycle arrest (GO:0007050),Molecular Function: cyclin-dependent protein serine/threonine kinase inhibitor activity (GO:0004861),Cellular Component: nucleus (GO:0005634);InterPro=Cyclin-dependent kinase inhibitor (IPR003175);Manual Curation=November 4%2C 2020;Literature_PMID=17012406;Oryzabase=12356;TENOR=Os11t0614800-00;KEGG=Os11t0614800-00
Chr11	irgsp1_rep	CDS	23866175	23866566	.	+	0	Parent=Os11t0614800-02
Chr11	irgsp1_rep	CDS	23866809	23866991	.	+	1	Parent=Os11t0614800-02
Chr11	irgsp1_rep	CDS	23867130	23867187	.	+	1	Parent=Os11t0614800-02
Chr11	irgsp1_rep	CDS	23867864	23867908	.	+	0	Parent=Os11t0614800-02
Chr11	irgsp1_rep	mRNA	23892404	23896095	.	+	.	ID=Os11t0614900-01;Name=Os11t0614900-01;Locus_id=Os11g0614900;Note=Protein of unknown function DUF829%2C TMEM53 domain containing protein.;Transcript_evidence=AK072924 (DDBJ%2C Best hit);ORF_evidence=Q2R179 (UniProt);InterPro=Protein of unknown function DUF829%2C TMEM53 (IPR008547);NIAS_FLcDNA=J023143D19;TENOR=Os11t0614900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	23892404	23892525	.	+	.	Parent=Os11t0614900-01
Chr11	irgsp1_rep	CDS	23892526	23892698	.	+	0	Parent=Os11t0614900-01
Chr11	irgsp1_rep	CDS	23893282	23893339	.	+	1	Parent=Os11t0614900-01
Chr11	irgsp1_rep	CDS	23893507	23893587	.	+	0	Parent=Os11t0614900-01
Chr11	irgsp1_rep	CDS	23893676	23893711	.	+	0	Parent=Os11t0614900-01
Chr11	irgsp1_rep	CDS	23893857	23894222	.	+	0	Parent=Os11t0614900-01
Chr11	irgsp1_rep	three_prime_UTR	23894223	23894329	.	+	.	Parent=Os11t0614900-01
Chr11	irgsp1_rep	three_prime_UTR	23895453	23896095	.	+	.	Parent=Os11t0614900-01
Chr11	irgsp1_rep	mRNA	23906483	23909177	.	+	.	ID=Os11t0615000-01;Name=Os11t0615000-01;Locus_id=Os11g0615000;Note=LNS2%2C Lipin/Ned1/Smp2 domain containing protein.;Transcript_evidence=AK062893 (DDBJ%2C Best hit);ORF_evidence=Q2R178 (UniProt);InterPro=LNS2%2C Lipin/Ned1/Smp2 (IPR013209),HAD-like domain (IPR023214);NIAS_FLcDNA=001-108-E06;Expression=AK062893;TENOR=Os11t0615000-01;KEGG=Os11t0615000-01
Chr11	irgsp1_rep	CDS	23906483	23906553	.	+	0	Parent=Os11t0615000-01
Chr11	irgsp1_rep	CDS	23907042	23907126	.	+	1	Parent=Os11t0615000-01
Chr11	irgsp1_rep	CDS	23907317	23907403	.	+	0	Parent=Os11t0615000-01
Chr11	irgsp1_rep	CDS	23907621	23907693	.	+	0	Parent=Os11t0615000-01
Chr11	irgsp1_rep	CDS	23907918	23907961	.	+	2	Parent=Os11t0615000-01
Chr11	irgsp1_rep	CDS	23908077	23908205	.	+	0	Parent=Os11t0615000-01
Chr11	irgsp1_rep	CDS	23908337	23908438	.	+	0	Parent=Os11t0615000-01
Chr11	irgsp1_rep	CDS	23908565	23908621	.	+	0	Parent=Os11t0615000-01
Chr11	irgsp1_rep	three_prime_UTR	23908622	23908716	.	+	.	Parent=Os11t0615000-01
Chr11	irgsp1_rep	three_prime_UTR	23908813	23909177	.	+	.	Parent=Os11t0615000-01
Chr11	irgsp1_rep	mRNA	23909878	23913296	.	+	.	ID=Os11t0615100-01;Name=Os11t0615100-01;Locus_id=Os11g0615100;Oryzabase Gene Symbol Synonym(s)=OsRPA49;Oryzabase Gene Name Synonym(s)=Pol I subunit RPA49%2C RNA polymerase II subunit RPA49;Note=RNA polymerase I associated factor%2C A49-like domain containing protein.;Transcript_evidence=AK069228 (DDBJ%2C Best hit);ORF_evidence=B6TU28 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899);InterPro=RNA polymerase I associated factor%2C A49-like (IPR009668);NIAS_FLcDNA=J023014N04;Oryzabase=18691;Expression=AK069228;TENOR=Os11t0615100-01;KEGG=Os11t0615100-01
Chr11	irgsp1_rep	five_prime_UTR	23909878	23909931	.	+	.	Parent=Os11t0615100-01
Chr11	irgsp1_rep	CDS	23909932	23910522	.	+	0	Parent=Os11t0615100-01
Chr11	irgsp1_rep	CDS	23911026	23911145	.	+	0	Parent=Os11t0615100-01
Chr11	irgsp1_rep	CDS	23911688	23911993	.	+	0	Parent=Os11t0615100-01
Chr11	irgsp1_rep	CDS	23912594	23913031	.	+	0	Parent=Os11t0615100-01
Chr11	irgsp1_rep	three_prime_UTR	23913032	23913296	.	+	.	Parent=Os11t0615100-01
Chr11	irgsp1_rep	mRNA	23913819	23917177	.	-	.	ID=Os11t0615200-01;Name=Os11t0615200-01;Locus_id=Os11g0615200;CGSNL Gene Symbol=GIF1;CGSNL Gene Name=GRF-INTERACTING FACTOR 1;Oryzabase Gene Symbol Synonym(s)=OsGIF1;Oryzabase Gene Name Synonym(s)=GRF-interacting factor 1;Note=SSXT family protein.;Transcript_evidence=AK241971 (DDBJ%2C Best hit);ORF_evidence=A5HEH5 (UniProt);InterPro=SSXT (IPR007726);NIAS_FLcDNA=J075095O13;Oryzabase=15527;TENOR=Os11t0615200-01;KEGG=Os11t0615200-01
Chr11	irgsp1_rep	five_prime_UTR	23917094	23917177	.	-	.	Parent=Os11t0615200-01
Chr11	irgsp1_rep	CDS	23917007	23917093	.	-	0	Parent=Os11t0615200-01
Chr11	irgsp1_rep	CDS	23915803	23915879	.	-	0	Parent=Os11t0615200-01
Chr11	irgsp1_rep	CDS	23914522	23914609	.	-	1	Parent=Os11t0615200-01
Chr11	irgsp1_rep	CDS	23914070	23914435	.	-	0	Parent=Os11t0615200-01
Chr11	irgsp1_rep	three_prime_UTR	23913819	23914069	.	-	.	Parent=Os11t0615200-01
Chr11	irgsp1_rep	mRNA	23922536	23923746	.	+	.	ID=Os11t0615250-00;Name=Os11t0615250-00;Locus_id=Os11g0615250;Note=Similar to Bifunctional dihydrofolate reductase-thymidylate synthase.;Transcript_evidence=FP098848 (DDBJ);ORF_evidence=B9GCZ3 (UniProt);GO=Biological Process: dTMP biosynthetic process (GO:0006231),Molecular Function: thymidylate synthase activity (GO:0004799);InterPro=Thymidylate synthase (IPR000398),Thymidylate synthase/dCMP hydroxymethylase domain (IPR023451);TENOR=Os11t0615250-00
Chr11	irgsp1_rep	five_prime_UTR	23922536	23922612	.	+	.	Parent=Os11t0615250-00
Chr11	irgsp1_rep	CDS	23922704	23922870	.	+	0	Parent=Os11t0615250-00
Chr11	irgsp1_rep	CDS	23923324	23923387	.	+	1	Parent=Os11t0615250-00
Chr11	irgsp1_rep	CDS	23923642	23923746	.	+	0	Parent=Os11t0615250-00
Chr11	irgsp1_rep	mRNA	23925810	23927860	.	-	.	ID=Os11t0615300-00;Name=Os11t0615300-00;Locus_id=Os11g0615300;Note=Conserved hypothetical protein.;Transcript_evidence=CT835636 (DDBJ%2C Best hit);ORF_evidence=Q2R175 (UniProt);TENOR=Os11t0615300-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	23927557	23927860	.	-	.	Parent=Os11t0615300-00
Chr11	irgsp1_rep	CDS	23927551	23927556	.	-	0	Parent=Os11t0615300-00
Chr11	irgsp1_rep	CDS	23926033	23926314	.	-	0	Parent=Os11t0615300-00
Chr11	irgsp1_rep	three_prime_UTR	23925810	23926032	.	-	.	Parent=Os11t0615300-00
Chr11	irgsp1_rep	mRNA	23928114	23928503	.	+	.	ID=Os11t0615350-00;Name=Os11t0615350-00;Locus_id=Os11g0615350;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001176651.1 (RefSeq);TENOR=Os11t0615350-00;KEGG=Os11t0615350-00
Chr11	irgsp1_rep	CDS	23928114	23928503	.	+	0	Parent=Os11t0615350-00
Chr11	irgsp1_rep	mRNA	23933751	23933807	.	+	.	ID=Os11t0615550-00;Name=Os11t0615550-00;Locus_id=Os11g0615550;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0615550-00
Chr11	irgsp1_rep	exon	23933751	23933807	.	+	.	Parent=Os11t0615550-00
Chr11	irgsp1_rep	mRNA	23934121	23935127	.	+	.	ID=Os11t0615600-01;Name=Os11t0615600-01;Locus_id=Os11g0615600;Note=Conserved hypothetical protein.;Transcript_evidence=AK107101 (DDBJ%2C Best hit);ORF_evidence=A2ZGA8 (UniProt);NIAS_FLcDNA=002-122-A04;Expression=AK107101;TENOR=Os11t0615600-01;KEGG=Os11t0615600-01
Chr11	irgsp1_rep	five_prime_UTR	23934121	23934255	.	+	.	Parent=Os11t0615600-01
Chr11	irgsp1_rep	CDS	23934256	23934840	.	+	0	Parent=Os11t0615600-01
Chr11	irgsp1_rep	three_prime_UTR	23934841	23935127	.	+	.	Parent=Os11t0615600-01
Chr11	irgsp1_rep	mRNA	23938240	23942543	.	-	.	ID=Os11t0615700-01;Name=Os11t0615700-01;Locus_id=Os11g0615700;Oryzabase Gene Symbol Synonym(s)=OsPAE1%2C PAE1;Oryzabase Gene Name Synonym(s)=20S proteasome alpha5 subunit%2C 20S PROTEASOME ALPHA SUBUNIT E1;Note=Proteasome subunit alpha type 5 (EC 3.4.25.1) (20S proteasome alpha subunit E) (20S proteasome subunit alpha-5).;Transcript_evidence=AK103487 (DDBJ%2C Best hit);ORF_evidence=B8BLI9 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603),Cellular Component: proteasome core complex (GO:0005839),Cellular Component: proteasome core complex%2C alpha-subunit complex (GO:0019773),Molecular Function: endopeptidase activity (GO:0004175),Molecular Function: threonine-type endopeptidase activity (GO:0004298);InterPro=Proteasome%2C alpha-subunit%2C conserved site (IPR000426),Proteasome%2C subunit alpha/beta (IPR001353),Proteasome A-type subunit (IPR023332);NIAS_FLcDNA=J033130M12;Oryzabase=14498;Expression=AK103487;TENOR=Os11t0615700-01;KEGG=Os11t0615700-01 (EC:3.4.25.1)
Chr11	irgsp1_rep	five_prime_UTR	23942352	23942543	.	-	.	Parent=Os11t0615700-01
Chr11	irgsp1_rep	CDS	23942338	23942351	.	-	0	Parent=Os11t0615700-01
Chr11	irgsp1_rep	CDS	23942109	23942190	.	-	1	Parent=Os11t0615700-01
Chr11	irgsp1_rep	CDS	23941702	23941782	.	-	0	Parent=Os11t0615700-01
Chr11	irgsp1_rep	CDS	23940637	23940750	.	-	0	Parent=Os11t0615700-01
Chr11	irgsp1_rep	CDS	23940454	23940555	.	-	0	Parent=Os11t0615700-01
Chr11	irgsp1_rep	CDS	23939931	23939989	.	-	0	Parent=Os11t0615700-01
Chr11	irgsp1_rep	CDS	23939170	23939272	.	-	1	Parent=Os11t0615700-01
Chr11	irgsp1_rep	CDS	23938713	23938778	.	-	0	Parent=Os11t0615700-01
Chr11	irgsp1_rep	CDS	23938521	23938613	.	-	0	Parent=Os11t0615700-01
Chr11	irgsp1_rep	three_prime_UTR	23938240	23938520	.	-	.	Parent=Os11t0615700-01
Chr11	irgsp1_rep	mRNA	23938267	23942439	.	-	.	ID=Os11t0615700-02;Name=Os11t0615700-02;Locus_id=Os11g0615700;Oryzabase Gene Symbol Synonym(s)=OsPAE1%2C PAE1;Oryzabase Gene Name Synonym(s)=20S proteasome alpha5 subunit%2C 20S PROTEASOME ALPHA SUBUNIT E1;Note=Proteasome subunit alpha type 5 (EC 3.4.25.1) (20S proteasome alpha subunit E) (20S proteasome subunit alpha-5).;Transcript_evidence=AK059521 (DDBJ%2C Best hit);ORF_evidence=B8BLI9 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603),Cellular Component: proteasome core complex (GO:0005839),Cellular Component: proteasome core complex%2C alpha-subunit complex (GO:0019773),Molecular Function: endopeptidase activity (GO:0004175),Molecular Function: threonine-type endopeptidase activity (GO:0004298);InterPro=Proteasome%2C alpha-subunit%2C conserved site (IPR000426),Proteasome%2C subunit alpha/beta (IPR001353),Proteasome A-type subunit (IPR023332);NIAS_FLcDNA=001-029-C07;Oryzabase=14498;Expression=AK059521;TENOR=Os11t0615700-02;KEGG=Os11t0615700-02 (EC:3.4.25.1)
Chr11	irgsp1_rep	five_prime_UTR	23942352	23942439	.	-	.	Parent=Os11t0615700-02
Chr11	irgsp1_rep	CDS	23942338	23942351	.	-	0	Parent=Os11t0615700-02
Chr11	irgsp1_rep	CDS	23942109	23942190	.	-	1	Parent=Os11t0615700-02
Chr11	irgsp1_rep	CDS	23941702	23941782	.	-	0	Parent=Os11t0615700-02
Chr11	irgsp1_rep	CDS	23940637	23940750	.	-	0	Parent=Os11t0615700-02
Chr11	irgsp1_rep	CDS	23940454	23940555	.	-	0	Parent=Os11t0615700-02
Chr11	irgsp1_rep	CDS	23939931	23939989	.	-	0	Parent=Os11t0615700-02
Chr11	irgsp1_rep	CDS	23939170	23939272	.	-	1	Parent=Os11t0615700-02
Chr11	irgsp1_rep	CDS	23938713	23938778	.	-	0	Parent=Os11t0615700-02
Chr11	irgsp1_rep	CDS	23938521	23938613	.	-	0	Parent=Os11t0615700-02
Chr11	irgsp1_rep	three_prime_UTR	23938267	23938520	.	-	.	Parent=Os11t0615700-02
Chr11	irgsp1_rep	mRNA	23938499	23942192	.	+	.	ID=Os11t0615750-00;Name=Os11t0615750-00;Locus_id=Os11g0615750;Note=Hypothetical gene.;Transcript_evidence=BT019190 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0615750-00;KEGG=Os11t0615750-00
Chr11	irgsp1_rep	five_prime_UTR	23938499	23938508	.	+	.	Parent=Os11t0615750-00
Chr11	irgsp1_rep	CDS	23938509	23938601	.	+	0	Parent=Os11t0615750-00
Chr11	irgsp1_rep	CDS	23938695	23938770	.	+	0	Parent=Os11t0615750-00
Chr11	irgsp1_rep	CDS	23939167	23939263	.	+	2	Parent=Os11t0615750-00
Chr11	irgsp1_rep	CDS	23939917	23939985	.	+	1	Parent=Os11t0615750-00
Chr11	irgsp1_rep	CDS	23940448	23940553	.	+	1	Parent=Os11t0615750-00
Chr11	irgsp1_rep	three_prime_UTR	23940554	23940559	.	+	.	Parent=Os11t0615750-00
Chr11	irgsp1_rep	three_prime_UTR	23940641	23940746	.	+	.	Parent=Os11t0615750-00
Chr11	irgsp1_rep	three_prime_UTR	23941692	23941771	.	+	.	Parent=Os11t0615750-00
Chr11	irgsp1_rep	three_prime_UTR	23942100	23942192	.	+	.	Parent=Os11t0615750-00
Chr11	irgsp1_rep	mRNA	23942684	23946580	.	+	.	ID=Os11t0615800-01;Name=Os11t0615800-01;Locus_id=Os11g0615800;RAP-DB Gene Symbol Synonym(s)=RAD51A1%2C OsRAD51A1;RAP-DB Gene Name Synonym(s)=DNA REPAIR PROTEIN RAD51A%2C DNA repair protein RAD51A1;CGSNL Gene Symbol=RAD51A1;CGSNL Gene Name=DNA REPAIR PROTEIN RAD51A;Oryzabase Gene Symbol Synonym(s)=OsRAD51A1;Oryzabase Gene Name Synonym(s)=DNA repair protein RAD51A1;Note=DNA repair protein RAD51%2C Homologous pairing;Transcript_evidence=AB080262;ORF_evidence=Q8SBB9;GO=Biological Process: double-strand break repair via homologous recombination (GO:0000724),Biological Process: DNA metabolic process (GO:0006259),Biological Process: DNA repair (GO:0006281),Biological Process: mitotic recombination-dependent replication fork processing (GO:1990426),Molecular Function: recombinase activity (GO:0000150),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: DNA binding (GO:0003677),Molecular Function: double-stranded DNA binding (GO:0003690),Molecular Function: single-stranded DNA binding (GO:0003697),Molecular Function: ATP binding (GO:0005524),Molecular Function: DNA-dependent ATPase activity (GO:0008094);InterPro=DNA recombination and repair protein%2C RecA-like (IPR016467),DNA recombination/repair protein Rad51 (IPR011941),DNA repair Rad51/transcription factor NusA%2C alpha-helical (IPR010995),DNA recombination and repair protein Rad51-like%2C C-terminal (IPR013632),P-loop containing nucleoside triphosphate hydrolase (IPR027417),DNA recombination and repair protein RecA-like%2C ATP-binding domain (IPR020588),Rad51/DMC1/RadA (IPR033925),AAA+ ATPase domain (IPR003593),DNA recombination and repair protein RecA%2C monomer-monomer interface (IPR020587);Manual Curation=December 14%2C 2016;Literature_PMID=24124491;Oryzabase=6789;Expression=AB080262;TENOR=Os11t0615800-00;KEGG=Os11t0615800-00
Chr11	irgsp1_rep	five_prime_UTR	23942684	23942772	.	+	.	Parent=Os11t0615800-01
Chr11	irgsp1_rep	CDS	23942773	23942859	.	+	0	Parent=Os11t0615800-01
Chr11	irgsp1_rep	CDS	23944234	23944375	.	+	0	Parent=Os11t0615800-01
Chr11	irgsp1_rep	CDS	23944449	23944562	.	+	2	Parent=Os11t0615800-01
Chr11	irgsp1_rep	CDS	23944653	23944744	.	+	2	Parent=Os11t0615800-01
Chr11	irgsp1_rep	CDS	23944831	23944925	.	+	0	Parent=Os11t0615800-01
Chr11	irgsp1_rep	CDS	23945003	23945116	.	+	1	Parent=Os11t0615800-01
Chr11	irgsp1_rep	CDS	23945710	23945839	.	+	1	Parent=Os11t0615800-01
Chr11	irgsp1_rep	CDS	23945967	23946088	.	+	0	Parent=Os11t0615800-01
Chr11	irgsp1_rep	CDS	23946182	23946305	.	+	1	Parent=Os11t0615800-01
Chr11	irgsp1_rep	three_prime_UTR	23946306	23946580	.	+	.	Parent=Os11t0615800-01
Chr11	irgsp1_rep	mRNA	23947040	23949310	.	+	.	ID=Os11t0615900-01;Name=Os11t0615900-01;Locus_id=Os11g0615900;Note=Conserved hypothetical protein.;Transcript_evidence=AK063272 (DDBJ%2C Best hit);ORF_evidence=B8BLJ3 (UniProt);NIAS_FLcDNA=001-113-B12;Expression=AK063272;TENOR=Os11t0615900-01;KEGG=Os11t0615900-01
Chr11	irgsp1_rep	five_prime_UTR	23947040	23948068	.	+	.	Parent=Os11t0615900-01
Chr11	irgsp1_rep	CDS	23948069	23948344	.	+	0	Parent=Os11t0615900-01
Chr11	irgsp1_rep	three_prime_UTR	23948345	23949310	.	+	.	Parent=Os11t0615900-01
Chr11	irgsp1_rep	mRNA	23968014	23975742	.	+	.	ID=Os11t0616100-00;Name=Os11t0616100-00;Locus_id=Os11g0616100;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R142 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Cellular Component: intracellular (GO:0005622),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Zinc finger%2C C2H2 (IPR007087),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os11t0616100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	23968014	23968040	.	+	0	Parent=Os11t0616100-00
Chr11	irgsp1_rep	CDS	23968156	23968446	.	+	0	Parent=Os11t0616100-00
Chr11	irgsp1_rep	CDS	23975074	23975742	.	+	0	Parent=Os11t0616100-00
Chr11	irgsp1_rep	mRNA	23976789	23979855	.	+	.	ID=Os11t0616200-01;Name=Os11t0616200-01;Locus_id=Os11g0616200;Note=Conserved hypothetical protein.;Transcript_evidence=AK069189 (DDBJ%2C Best hit);ORF_evidence=A2ZGB7 (UniProt);NIAS_FLcDNA=J023004N19;Expression=AK069189;TENOR=Os11t0616200-01;KEGG=Os11t0616200-01
Chr11	irgsp1_rep	five_prime_UTR	23976789	23976863	.	+	.	Parent=Os11t0616200-01
Chr11	irgsp1_rep	CDS	23976864	23977079	.	+	0	Parent=Os11t0616200-01
Chr11	irgsp1_rep	CDS	23978805	23979209	.	+	0	Parent=Os11t0616200-01
Chr11	irgsp1_rep	three_prime_UTR	23979210	23979855	.	+	.	Parent=Os11t0616200-01
Chr11	irgsp1_rep	mRNA	23979343	23979855	.	+	.	ID=Os11t0616200-02;Name=Os11t0616200-02;Locus_id=Os11g0616200;Note=Hypothetical gene.;Transcript_evidence=AK058716 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-019-E01;Expression=AK058716;TENOR=Os11t0616200-02;KEGG=Os11t0616200-02
Chr11	irgsp1_rep	CDS	23979343	23979681	.	+	0	Parent=Os11t0616200-02
Chr11	irgsp1_rep	three_prime_UTR	23979682	23979855	.	+	.	Parent=Os11t0616200-02
Chr11	irgsp1_rep	mRNA	23983327	23987001	.	-	.	ID=Os11t0616300-01;Name=Os11t0616300-01;Locus_id=Os11g0616300;CGSNL Gene Symbol=REM6.4;CGSNL Gene Name=REMORIN 6.4;Oryzabase Gene Symbol Synonym(s)=OsREM6.4;Oryzabase Gene Name Synonym(s)=Remorin 6.4%2C remorin group 6 member 4;Note=Remorin%2C C-terminal region domain containing protein.;Transcript_evidence=AK103590 (DDBJ%2C Best hit);ORF_evidence=A2ZGB8 (UniProt);InterPro=Remorin%2C C-terminal (IPR005516);NIAS_FLcDNA=J033133C18;Oryzabase=20281;Expression=AK103590;TENOR=Os11t0616300-01;KEGG=Os11t0616300-01
Chr11	irgsp1_rep	five_prime_UTR	23986930	23987001	.	-	.	Parent=Os11t0616300-01
Chr11	irgsp1_rep	CDS	23986861	23986929	.	-	0	Parent=Os11t0616300-01
Chr11	irgsp1_rep	CDS	23986171	23986735	.	-	0	Parent=Os11t0616300-01
Chr11	irgsp1_rep	CDS	23985252	23985747	.	-	2	Parent=Os11t0616300-01
Chr11	irgsp1_rep	CDS	23985076	23985157	.	-	1	Parent=Os11t0616300-01
Chr11	irgsp1_rep	CDS	23983512	23983781	.	-	0	Parent=Os11t0616300-01
Chr11	irgsp1_rep	three_prime_UTR	23983327	23983511	.	-	.	Parent=Os11t0616300-01
Chr11	irgsp1_rep	mRNA	23998632	23999516	.	-	.	ID=Os11t0616700-00;Name=Os11t0616700-00;Locus_id=Os11g0616700;Note=Hypothetical conserved gene.;Transcript_evidence=CU406277 (DDBJ%2C Best hit);ORF_evidence=XP_002298645.1 (RefSeq);TENOR=Os11t0616700-00;KEGG=Os11t0616700-00
Chr11	irgsp1_rep	five_prime_UTR	23999358	23999516	.	-	.	Parent=Os11t0616700-00
Chr11	irgsp1_rep	CDS	23998875	23999357	.	-	0	Parent=Os11t0616700-00
Chr11	irgsp1_rep	three_prime_UTR	23998632	23998874	.	-	.	Parent=Os11t0616700-00
Chr11	irgsp1_rep	mRNA	24001624	24010471	.	+	.	ID=Os11t0616900-01;Name=Os11t0616900-01;Locus_id=Os11g0616900;Note=Hypothetical gene.;Transcript_evidence=AK066199 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013052B17;Expression=AK066199;TENOR=Os11t0616900-01;KEGG=Os11t0616900-01
Chr11	irgsp1_rep	five_prime_UTR	24001624	24001941	.	+	.	Parent=Os11t0616900-01
Chr11	irgsp1_rep	five_prime_UTR	24004217	24004788	.	+	.	Parent=Os11t0616900-01
Chr11	irgsp1_rep	five_prime_UTR	24004884	24005071	.	+	.	Parent=Os11t0616900-01
Chr11	irgsp1_rep	five_prime_UTR	24006407	24006440	.	+	.	Parent=Os11t0616900-01
Chr11	irgsp1_rep	CDS	24006441	24006663	.	+	0	Parent=Os11t0616900-01
Chr11	irgsp1_rep	CDS	24007267	24007499	.	+	2	Parent=Os11t0616900-01
Chr11	irgsp1_rep	three_prime_UTR	24007500	24010471	.	+	.	Parent=Os11t0616900-01
Chr11	irgsp1_rep	mRNA	24001668	24008963	.	+	.	ID=Os11t0616900-02;Name=Os11t0616900-02;Locus_id=Os11g0616900;Note=Hypothetical protein.;Transcript_evidence=AK102824 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033108P16;Expression=AK102824;TENOR=Os11t0616900-02;KEGG=Os11t0616900-02
Chr11	irgsp1_rep	five_prime_UTR	24001668	24001941	.	+	.	Parent=Os11t0616900-02
Chr11	irgsp1_rep	five_prime_UTR	24004217	24004788	.	+	.	Parent=Os11t0616900-02
Chr11	irgsp1_rep	five_prime_UTR	24004884	24005071	.	+	.	Parent=Os11t0616900-02
Chr11	irgsp1_rep	five_prime_UTR	24006407	24006440	.	+	.	Parent=Os11t0616900-02
Chr11	irgsp1_rep	CDS	24006441	24006663	.	+	0	Parent=Os11t0616900-02
Chr11	irgsp1_rep	CDS	24007267	24007369	.	+	2	Parent=Os11t0616900-02
Chr11	irgsp1_rep	CDS	24007480	24008269	.	+	1	Parent=Os11t0616900-02
Chr11	irgsp1_rep	three_prime_UTR	24008270	24008505	.	+	.	Parent=Os11t0616900-02
Chr11	irgsp1_rep	three_prime_UTR	24008632	24008963	.	+	.	Parent=Os11t0616900-02
Chr11	irgsp1_rep	mRNA	24031853	24034690	.	-	.	ID=Os11t0617532-01;Name=Os11t0617532-01;Locus_id=Os11g0617532;Note=Similar to H0613A10.3 protein.;Transcript_evidence=AK288671 (DDBJ%2C Best hit);ORF_evidence=Q25A58 (UniProt);NIAS_FLcDNA=J090058O14;TENOR=Os11t0617532-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	24032535	24034690	.	-	.	Parent=Os11t0617532-01
Chr11	irgsp1_rep	CDS	24032358	24032534	.	-	0	Parent=Os11t0617532-01
Chr11	irgsp1_rep	three_prime_UTR	24031853	24032357	.	-	.	Parent=Os11t0617532-01
Chr11	irgsp1_rep	mRNA	24037402	24039594	.	+	.	ID=Os11t0617700-00;Name=Os11t0617700-00;Locus_id=Os11g0617700;Note=Protein of unknown function DUF594 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R153 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);TENOR=Os11t0617700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	24037402	24039594	.	+	0	Parent=Os11t0617700-00
Chr11	irgsp1_rep	mRNA	24041013	24045398	.	+	.	ID=Os11t0617800-01;Name=Os11t0617800-01;Locus_id=Os11g0617800;Note=Similar to OSIGBa0140A01.4 protein.;Transcript_evidence=AK062778 (DDBJ%2C Best hit);ORF_evidence=Q01KT5 (UniProt);NIAS_FLcDNA=001-107-A11;TENOR=Os11t0617800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	24041013	24041464	.	+	.	Parent=Os11t0617800-01
Chr11	irgsp1_rep	five_prime_UTR	24043743	24043797	.	+	.	Parent=Os11t0617800-01
Chr11	irgsp1_rep	five_prime_UTR	24045125	24045248	.	+	.	Parent=Os11t0617800-01
Chr11	irgsp1_rep	CDS	24045249	24045374	.	+	0	Parent=Os11t0617800-01
Chr11	irgsp1_rep	three_prime_UTR	24045375	24045398	.	+	.	Parent=Os11t0617800-01
Chr11	irgsp1_rep	mRNA	24067050	24070308	.	-	.	ID=Os11t0618300-01;Name=Os11t0618300-01;Locus_id=Os11g0618300;Note=Hypothetical conserved gene.;Transcript_evidence=AK242189 (DDBJ%2C Best hit);ORF_evidence=A2ZGD1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J075163A05;TENOR=Os11t0618300-01;KEGG=Os11t0618300-01 (EC:2.7.11.1)
Chr11	irgsp1_rep	five_prime_UTR	24069633	24070308	.	-	.	Parent=Os11t0618300-01
Chr11	irgsp1_rep	five_prime_UTR	24068912	24068942	.	-	.	Parent=Os11t0618300-01
Chr11	irgsp1_rep	CDS	24068859	24068911	.	-	0	Parent=Os11t0618300-01
Chr11	irgsp1_rep	CDS	24068528	24068717	.	-	1	Parent=Os11t0618300-01
Chr11	irgsp1_rep	CDS	24068153	24068386	.	-	0	Parent=Os11t0618300-01
Chr11	irgsp1_rep	CDS	24067292	24067933	.	-	0	Parent=Os11t0618300-01
Chr11	irgsp1_rep	three_prime_UTR	24067050	24067291	.	-	.	Parent=Os11t0618300-01
Chr11	irgsp1_rep	mRNA	24077719	24082156	.	-	.	ID=Os11t0618500-01;Name=Os11t0618500-01;Locus_id=Os11g0618500;Note=Conserved hypothetical protein.;Transcript_evidence=AK099744 (DDBJ%2C Best hit);ORF_evidence=B8BLK4 (UniProt);NIAS_FLcDNA=J013091I08;TENOR=Os11t0618500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	24081216	24082156	.	-	.	Parent=Os11t0618500-01
Chr11	irgsp1_rep	five_prime_UTR	24080214	24080987	.	-	.	Parent=Os11t0618500-01
Chr11	irgsp1_rep	CDS	24079137	24080213	.	-	0	Parent=Os11t0618500-01
Chr11	irgsp1_rep	three_prime_UTR	24077719	24079136	.	-	.	Parent=Os11t0618500-01
Chr11	irgsp1_rep	mRNA	24077702	24079319	.	-	.	ID=Os11t0618500-02;Name=Os11t0618500-02;Locus_id=Os11g0618500;Note=Protein of unknown function DUF594 family protein.;Transcript_evidence=AK068193 (DDBJ%2C Best hit);ORF_evidence=B9G8L2 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);NIAS_FLcDNA=J013146L08;Expression=AK068193;TENOR=Os11t0618500-02;KEGG=Os11t0618500-02
Chr11	irgsp1_rep	five_prime_UTR	24079196	24079319	.	-	.	Parent=Os11t0618500-02
Chr11	irgsp1_rep	CDS	24077888	24079195	.	-	0	Parent=Os11t0618500-02
Chr11	irgsp1_rep	three_prime_UTR	24077702	24077887	.	-	.	Parent=Os11t0618500-02
Chr11	irgsp1_rep	mRNA	24084616	24086424	.	-	.	ID=Os11t0618600-00;Name=Os11t0618600-00;Locus_id=Os11g0618600;Note=Tyrosine protein kinase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R142 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);TENOR=Os11t0618600-00;KEGG=Os11t0618600-00 (EC:2.7.11.1)
Chr11	irgsp1_rep	CDS	24086329	24086424	.	-	0	Parent=Os11t0618600-00
Chr11	irgsp1_rep	CDS	24086178	24086231	.	-	0	Parent=Os11t0618600-00
Chr11	irgsp1_rep	CDS	24085443	24085898	.	-	0	Parent=Os11t0618600-00
Chr11	irgsp1_rep	CDS	24084616	24084831	.	-	0	Parent=Os11t0618600-00
Chr11	irgsp1_rep	mRNA	24089403	24092787	.	-	.	ID=Os11t0618700-01;Name=Os11t0618700-01;Locus_id=Os11g0618700;Note=Protein of unknown function DUF594 domain containing protein.;Transcript_evidence=AK240898 (DDBJ%2C Best hit);ORF_evidence=NP_001176657.1 (RefSeq);InterPro=Protein of unknown function DUF594 (IPR007658);NIAS_FLcDNA=J065032M10;TENOR=Os11t0618700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	24092419	24092787	.	-	.	Parent=Os11t0618700-01
Chr11	irgsp1_rep	CDS	24092395	24092418	.	-	0	Parent=Os11t0618700-01
Chr11	irgsp1_rep	CDS	24089706	24091922	.	-	0	Parent=Os11t0618700-01
Chr11	irgsp1_rep	three_prime_UTR	24089403	24089705	.	-	.	Parent=Os11t0618700-01
Chr11	irgsp1_rep	mRNA	24096264	24097002	.	-	.	ID=Os11t0618800-00;Name=Os11t0618800-00;Locus_id=Os11g0618800;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R143 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);TENOR=Os11t0618800-00;KEGG=Os11t0618800-00
Chr11	irgsp1_rep	CDS	24096768	24097002	.	-	0	Parent=Os11t0618800-00
Chr11	irgsp1_rep	CDS	24096264	24096553	.	-	2	Parent=Os11t0618800-00
Chr11	irgsp1_rep	mRNA	24097325	24100566	.	-	.	ID=Os11t0618850-00;Name=Os11t0618850-00;Locus_id=Os11g0618850;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R143 (UniProt);TENOR=Os11t0618850-00;KEGG=Os11t0618850-00
Chr11	irgsp1_rep	CDS	24100387	24100566	.	-	0	Parent=Os11t0618850-00
Chr11	irgsp1_rep	CDS	24099742	24099899	.	-	0	Parent=Os11t0618850-00
Chr11	irgsp1_rep	CDS	24099380	24099431	.	-	1	Parent=Os11t0618850-00
Chr11	irgsp1_rep	CDS	24097325	24098533	.	-	0	Parent=Os11t0618850-00
Chr11	irgsp1_rep	mRNA	24113478	24116252	.	+	.	ID=Os11t0619000-01;Name=Os11t0619000-01;Locus_id=Os11g0619000;Note=Hypothetical protein.;Transcript_evidence=AK071396 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023092A09;Expression=AK071396;TENOR=Os11t0619000-01;KEGG=Os11t0619000-01
Chr11	irgsp1_rep	five_prime_UTR	24113478	24114692	.	+	.	Parent=Os11t0619000-01
Chr11	irgsp1_rep	CDS	24114693	24115001	.	+	0	Parent=Os11t0619000-01
Chr11	irgsp1_rep	three_prime_UTR	24115002	24116252	.	+	.	Parent=Os11t0619000-01
Chr11	irgsp1_rep	mRNA	24120143	24122947	.	-	.	ID=Os11t0619500-00;Name=Os11t0619500-00;Locus_id=Os11g0619500;CGSNL Gene Symbol=UBP1-10;CGSNL Gene Name=UBIQUITIN-SPECIFIC PROCESSING PROTEASE 1-10;Oryzabase Gene Symbol Synonym(s)=OsUBP1-10;Oryzabase Gene Name Synonym(s)=ubiquitin-specific processing protease 1-10;Note=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A2ZGE5 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Molecular Function: ubiquitin thiolesterase activity (GO:0004221);InterPro=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (IPR001394),Protein of unknown function DUF594 (IPR007658),Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2%2C conserved site (IPR018200);Oryzabase=22871;TENOR=Os11t0619500-00
Chr11	irgsp1_rep	CDS	24120600	24122947	.	-	0	Parent=Os11t0619500-00
Chr11	irgsp1_rep	CDS	24120143	24120443	.	-	1	Parent=Os11t0619500-00
Chr11	irgsp1_rep	mRNA	24160577	24161934	.	+	.	ID=Os11t0619800-01;Name=Os11t0619800-01;Locus_id=Os11g0619800;Note=Kelch related domain containing protein.;Transcript_evidence=AK107437 (DDBJ%2C Best hit);ORF_evidence=A3CDG3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069);NIAS_FLcDNA=002-128-B01;Expression=AK107437;TENOR=Os11t0619800-01;KEGG=Os11t0619800-01
Chr11	irgsp1_rep	five_prime_UTR	24160577	24160577	.	+	.	Parent=Os11t0619800-01
Chr11	irgsp1_rep	CDS	24160578	24161720	.	+	0	Parent=Os11t0619800-01
Chr11	irgsp1_rep	three_prime_UTR	24161721	24161934	.	+	.	Parent=Os11t0619800-01
Chr11	irgsp1_rep	mRNA	24166430	24169621	.	-	.	ID=Os11t0620000-01;Name=Os11t0620000-01;Locus_id=Os11g0620000;Oryzabase Gene Symbol Synonym(s)=OsSigP7%2C SIGP7;Oryzabase Gene Name Synonym(s)=Type I Signal Peptidase 7%2C TYPE I SIGNAL PEPTIDASE 7;Note=Peptidase S26A%2C signal peptidase I family protein.;Transcript_evidence=AK106677 (DDBJ%2C Best hit);ORF_evidence=Q2R135 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Cellular Component: membrane (GO:0016020),Molecular Function: serine-type peptidase activity (GO:0008236);InterPro=Peptidase S26A%2C signal peptidase I (IPR000223),Peptidase S24/S26A/S26B/S26C%2C beta-ribbon domain (IPR011056),Peptidase S24/S26A/S26B/S26C (IPR015927),Peptidase S24/S26A/S26B (IPR019759);NIAS_FLcDNA=002-114-A11;Oryzabase=20048;Expression=AK106677;TENOR=Os11t0620000-01;KEGG=Os11t0620000-01 (EC:3.4.99.-)
Chr11	irgsp1_rep	five_prime_UTR	24169574	24169621	.	-	.	Parent=Os11t0620000-01
Chr11	irgsp1_rep	CDS	24169436	24169573	.	-	0	Parent=Os11t0620000-01
Chr11	irgsp1_rep	CDS	24169109	24169333	.	-	0	Parent=Os11t0620000-01
Chr11	irgsp1_rep	CDS	24168172	24168282	.	-	0	Parent=Os11t0620000-01
Chr11	irgsp1_rep	CDS	24166911	24166961	.	-	0	Parent=Os11t0620000-01
Chr11	irgsp1_rep	three_prime_UTR	24166430	24166910	.	-	.	Parent=Os11t0620000-01
Chr11	irgsp1_rep	mRNA	24170773	24175615	.	-	.	ID=Os11t0620100-01;Name=Os11t0620100-01;Locus_id=Os11g0620100;Note=Oligouridylate binding protein.;Transcript_evidence=AK120437 (DDBJ%2C Best hit),AK099639 (DDBJ%2C Best hit);ORF_evidence=B8BLL8 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),RNA recognition motif domain%2C eukaryote (IPR003954),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013098D14,J013059N16;TENOR=Os11t0620100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	24175332	24175615	.	-	.	Parent=Os11t0620100-01
Chr11	irgsp1_rep	CDS	24175152	24175331	.	-	0	Parent=Os11t0620100-01
Chr11	irgsp1_rep	CDS	24174273	24174334	.	-	0	Parent=Os11t0620100-01
Chr11	irgsp1_rep	CDS	24173926	24174028	.	-	1	Parent=Os11t0620100-01
Chr11	irgsp1_rep	CDS	24173077	24173153	.	-	0	Parent=Os11t0620100-01
Chr11	irgsp1_rep	CDS	24172913	24172974	.	-	1	Parent=Os11t0620100-01
Chr11	irgsp1_rep	CDS	24172708	24172795	.	-	2	Parent=Os11t0620100-01
Chr11	irgsp1_rep	CDS	24172493	24172568	.	-	1	Parent=Os11t0620100-01
Chr11	irgsp1_rep	CDS	24172374	24172404	.	-	0	Parent=Os11t0620100-01
Chr11	irgsp1_rep	CDS	24172161	24172280	.	-	2	Parent=Os11t0620100-01
Chr11	irgsp1_rep	CDS	24171922	24172007	.	-	2	Parent=Os11t0620100-01
Chr11	irgsp1_rep	CDS	24171650	24171823	.	-	0	Parent=Os11t0620100-01
Chr11	irgsp1_rep	CDS	24171113	24171379	.	-	0	Parent=Os11t0620100-01
Chr11	irgsp1_rep	three_prime_UTR	24170773	24171112	.	-	.	Parent=Os11t0620100-01
Chr11	irgsp1_rep	mRNA	24170746	24172973	.	-	.	ID=Os11t0620100-03;Name=Os11t0620100-03;Locus_id=Os11g0620100;Note=Hypothetical conserved gene.;Transcript_evidence=AK060913 (DDBJ%2C Best hit);ORF_evidence=B8BLL8 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),RNA recognition motif domain%2C eukaryote (IPR003954),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-035-G02;Expression=AK060913;TENOR=Os11t0620100-03;KEGG=Os11t0620100-03
Chr11	irgsp1_rep	CDS	24172913	24172973	.	-	0	Parent=Os11t0620100-03
Chr11	irgsp1_rep	CDS	24172708	24172795	.	-	2	Parent=Os11t0620100-03
Chr11	irgsp1_rep	CDS	24172493	24172568	.	-	1	Parent=Os11t0620100-03
Chr11	irgsp1_rep	CDS	24172374	24172404	.	-	0	Parent=Os11t0620100-03
Chr11	irgsp1_rep	CDS	24172161	24172280	.	-	2	Parent=Os11t0620100-03
Chr11	irgsp1_rep	CDS	24171922	24172007	.	-	2	Parent=Os11t0620100-03
Chr11	irgsp1_rep	CDS	24171650	24171823	.	-	0	Parent=Os11t0620100-03
Chr11	irgsp1_rep	CDS	24171113	24171379	.	-	0	Parent=Os11t0620100-03
Chr11	irgsp1_rep	three_prime_UTR	24170746	24171112	.	-	.	Parent=Os11t0620100-03
Chr11	irgsp1_rep	mRNA	24171141	24175544	.	+	.	ID=Os11t0620150-01;Name=Os11t0620150-01;Locus_id=Os11g0620150;Note=Hypothetical gene.;Transcript_evidence=AK107324 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-126-E09;TENOR=Os11t0620150-01
Chr11	irgsp1_rep	five_prime_UTR	24171141	24171379	.	+	.	Parent=Os11t0620150-01
Chr11	irgsp1_rep	five_prime_UTR	24171650	24171823	.	+	.	Parent=Os11t0620150-01
Chr11	irgsp1_rep	five_prime_UTR	24171922	24172007	.	+	.	Parent=Os11t0620150-01
Chr11	irgsp1_rep	five_prime_UTR	24172161	24172280	.	+	.	Parent=Os11t0620150-01
Chr11	irgsp1_rep	five_prime_UTR	24172374	24172404	.	+	.	Parent=Os11t0620150-01
Chr11	irgsp1_rep	five_prime_UTR	24172493	24172568	.	+	.	Parent=Os11t0620150-01
Chr11	irgsp1_rep	five_prime_UTR	24172708	24172795	.	+	.	Parent=Os11t0620150-01
Chr11	irgsp1_rep	five_prime_UTR	24172913	24172974	.	+	.	Parent=Os11t0620150-01
Chr11	irgsp1_rep	five_prime_UTR	24173077	24173153	.	+	.	Parent=Os11t0620150-01
Chr11	irgsp1_rep	five_prime_UTR	24173926	24174028	.	+	.	Parent=Os11t0620150-01
Chr11	irgsp1_rep	five_prime_UTR	24174273	24174334	.	+	.	Parent=Os11t0620150-01
Chr11	irgsp1_rep	five_prime_UTR	24175152	24175329	.	+	.	Parent=Os11t0620150-01
Chr11	irgsp1_rep	CDS	24175330	24175544	.	+	0	Parent=Os11t0620150-01
Chr11	irgsp1_rep	mRNA	24180911	24181379	.	+	.	ID=Os11t0620300-01;Name=Os11t0620300-01;Locus_id=Os11g0620300;Oryzabase Gene Symbol Synonym(s)=OsLTP2.13%2C OsLtpII.13;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein 2.13%2C lipid transfer protein 2.13%2C type 2 non-specific lipid transfer protein 13;Note=Similar to Nonspecific lipid-transfer protein 2 (LTP 2).;Transcript_evidence=AK107901 (DDBJ%2C Best hit);ORF_evidence=Q6ZX07 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=002-134-F08;Oryzabase=13541;Expression=AK107901;TENOR=Os11t0620300-01;KEGG=Os11t0620300-01
Chr11	irgsp1_rep	five_prime_UTR	24180911	24180934	.	+	.	Parent=Os11t0620300-01
Chr11	irgsp1_rep	CDS	24180935	24181267	.	+	0	Parent=Os11t0620300-01
Chr11	irgsp1_rep	three_prime_UTR	24181268	24181379	.	+	.	Parent=Os11t0620300-01
Chr11	irgsp1_rep	mRNA	24184610	24191172	.	+	.	ID=Os11t0620400-01;Name=Os11t0620400-01;Locus_id=Os11g0620400;Note=Sugar/inositol transporter domain containing protein.;Transcript_evidence=AK068224 (DDBJ%2C Best hit);ORF_evidence=Q2R131 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J013136L19;TENOR=Os11t0620400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	24184610	24184783	.	+	.	Parent=Os11t0620400-01
Chr11	irgsp1_rep	five_prime_UTR	24186197	24186301	.	+	.	Parent=Os11t0620400-01
Chr11	irgsp1_rep	five_prime_UTR	24187433	24187472	.	+	.	Parent=Os11t0620400-01
Chr11	irgsp1_rep	CDS	24187473	24187554	.	+	0	Parent=Os11t0620400-01
Chr11	irgsp1_rep	CDS	24187711	24188277	.	+	2	Parent=Os11t0620400-01
Chr11	irgsp1_rep	CDS	24189104	24189813	.	+	2	Parent=Os11t0620400-01
Chr11	irgsp1_rep	CDS	24189951	24190138	.	+	0	Parent=Os11t0620400-01
Chr11	irgsp1_rep	CDS	24190525	24190954	.	+	1	Parent=Os11t0620400-01
Chr11	irgsp1_rep	three_prime_UTR	24190955	24191172	.	+	.	Parent=Os11t0620400-01
Chr11	irgsp1_rep	mRNA	24184610	24191330	.	+	.	ID=Os11t0620400-02;Name=Os11t0620400-02;Locus_id=Os11g0620400;Note=Sugar/inositol transporter domain containing protein.;Transcript_evidence=AK120270 (DDBJ%2C Best hit);ORF_evidence=Q2R130 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J013047K03;TENOR=Os11t0620400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	24184610	24184783	.	+	.	Parent=Os11t0620400-02
Chr11	irgsp1_rep	five_prime_UTR	24186197	24186301	.	+	.	Parent=Os11t0620400-02
Chr11	irgsp1_rep	five_prime_UTR	24187433	24187472	.	+	.	Parent=Os11t0620400-02
Chr11	irgsp1_rep	CDS	24187473	24187554	.	+	0	Parent=Os11t0620400-02
Chr11	irgsp1_rep	CDS	24187711	24188277	.	+	2	Parent=Os11t0620400-02
Chr11	irgsp1_rep	CDS	24189116	24189813	.	+	2	Parent=Os11t0620400-02
Chr11	irgsp1_rep	CDS	24189951	24190138	.	+	0	Parent=Os11t0620400-02
Chr11	irgsp1_rep	CDS	24190525	24190954	.	+	1	Parent=Os11t0620400-02
Chr11	irgsp1_rep	three_prime_UTR	24190955	24191330	.	+	.	Parent=Os11t0620400-02
Chr11	irgsp1_rep	mRNA	24187723	24190926	.	-	.	ID=Os11t0620450-00;Name=Os11t0620450-00;Locus_id=Os11g0620450;Note=Hypothetical protein.;Transcript_evidence=tplb0045g05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0620450-00
Chr11	irgsp1_rep	five_prime_UTR	24190666	24190926	.	-	.	Parent=Os11t0620450-00
Chr11	irgsp1_rep	CDS	24190515	24190665	.	-	0	Parent=Os11t0620450-00
Chr11	irgsp1_rep	CDS	24190047	24190126	.	-	2	Parent=Os11t0620450-00
Chr11	irgsp1_rep	three_prime_UTR	24189162	24190046	.	-	.	Parent=Os11t0620450-00
Chr11	irgsp1_rep	three_prime_UTR	24187723	24188425	.	-	.	Parent=Os11t0620450-00
Chr11	irgsp1_rep	mRNA	24192139	24195237	.	+	.	ID=Os11t0620500-01;Name=Os11t0620500-01;Locus_id=Os11g0620500;Note=Tyrosine protein kinase domain containing protein.;Transcript_evidence=AK120965 (DDBJ%2C Best hit);ORF_evidence=Q9XEV0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023040E06;Expression=AK120965;TENOR=Os11t0620500-01;KEGG=Os11t0620500-01
Chr11	irgsp1_rep	five_prime_UTR	24192139	24192160	.	+	.	Parent=Os11t0620500-01
Chr11	irgsp1_rep	CDS	24192161	24193586	.	+	0	Parent=Os11t0620500-01
Chr11	irgsp1_rep	CDS	24194201	24194868	.	+	2	Parent=Os11t0620500-01
Chr11	irgsp1_rep	three_prime_UTR	24194869	24195237	.	+	.	Parent=Os11t0620500-01
Chr11	irgsp1_rep	mRNA	24203624	24204382	.	+	.	ID=Os11t0620800-00;Name=Os11t0620800-00;Locus_id=Os11g0620800;Oryzabase Gene Name Synonym(s)=Hypothetical conserved gene;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R128 (UniProt);Oryzabase=22025;TENOR=Os11t0620800-00;KEGG=Os11t0620800-00
Chr11	irgsp1_rep	CDS	24203624	24204120	.	+	0	Parent=Os11t0620800-00
Chr11	irgsp1_rep	CDS	24204169	24204382	.	+	1	Parent=Os11t0620800-00
Chr11	irgsp1_rep	mRNA	24210824	24214593	.	-	.	ID=Os11t0621000-01;Name=Os11t0621000-01;Locus_id=Os11g0621000;Note=Protein of unknown function DUF716 family protein.;Transcript_evidence=AK106377 (DDBJ%2C Best hit);ORF_evidence=Q2R127 (UniProt);InterPro=Protein of unknown function DUF716%2C TMEM45 (IPR006904);NIAS_FLcDNA=002-102-D05;Expression=AK106377;TENOR=Os11t0621000-01;KEGG=Os11t0621000-01
Chr11	irgsp1_rep	five_prime_UTR	24214216	24214593	.	-	.	Parent=Os11t0621000-01
Chr11	irgsp1_rep	five_prime_UTR	24213968	24213990	.	-	.	Parent=Os11t0621000-01
Chr11	irgsp1_rep	CDS	24213606	24213967	.	-	0	Parent=Os11t0621000-01
Chr11	irgsp1_rep	CDS	24211048	24211615	.	-	1	Parent=Os11t0621000-01
Chr11	irgsp1_rep	three_prime_UTR	24210824	24211047	.	-	.	Parent=Os11t0621000-01
Chr11	irgsp1_rep	mRNA	24210656	24214122	.	-	.	ID=Os11t0621000-02;Name=Os11t0621000-02;Locus_id=Os11g0621000;Note=Protein of unknown function DUF716 family protein.;Transcript_evidence=AK099685 (DDBJ%2C Best hit);ORF_evidence=Q2R127 (UniProt);InterPro=Protein of unknown function DUF716%2C TMEM45 (IPR006904);NIAS_FLcDNA=J013072D03;Expression=AK099685;TENOR=Os11t0621000-02;KEGG=Os11t0621000-02
Chr11	irgsp1_rep	five_prime_UTR	24213968	24214122	.	-	.	Parent=Os11t0621000-02
Chr11	irgsp1_rep	CDS	24213606	24213967	.	-	0	Parent=Os11t0621000-02
Chr11	irgsp1_rep	CDS	24211048	24211615	.	-	1	Parent=Os11t0621000-02
Chr11	irgsp1_rep	three_prime_UTR	24210656	24211047	.	-	.	Parent=Os11t0621000-02
Chr11	irgsp1_rep	mRNA	24218226	24218772	.	+	.	ID=Os11t0621200-00;Name=Os11t0621200-00;Locus_id=Os11g0621200;Note=Similar to OSIGBa0117N13.1 protein.;Transcript_evidence=AK062753 (DDBJ%2C Secondary hit);ORF_evidence=Q00RL6 (UniProt);Expression=AK062753;TENOR=Os11t0621200-00;KEGG=Os11t0621200-00
Chr11	irgsp1_rep	five_prime_UTR	24218226	24218226	.	+	.	Parent=Os11t0621200-00
Chr11	irgsp1_rep	CDS	24218227	24218556	.	+	0	Parent=Os11t0621200-00
Chr11	irgsp1_rep	three_prime_UTR	24218557	24218574	.	+	.	Parent=Os11t0621200-00
Chr11	irgsp1_rep	three_prime_UTR	24218581	24218772	.	+	.	Parent=Os11t0621200-00
Chr11	irgsp1_rep	mRNA	24218780	24224440	.	-	.	ID=Os11t0621300-01;Name=Os11t0621300-01;Locus_id=Os11g0621300;RAP-DB Gene Symbol Synonym(s)=OsGRDP1;RAP-DB Gene Name Synonym(s)=glycine-rich domain protein 1;Note=Glycine-rich domain (GRD)-containing protein%2C Regulation of cell death and disease resistance;Transcript_evidence=Inferred from literature;ORF_evidence=Q2R124;InterPro=Glycine-rich domain-containing protein-like (IPR009836);Manual Curation=October 2%2C 2020;Literature_PMID=32995857;TENOR=Os11t0621300-00;KEGG=Os11t0621300-00;Subcellular location=cytosol (GO:0005829),membrane (GO:0016020)
Chr11	irgsp1_rep	five_prime_UTR	24224381	24224440	.	-	.	Parent=Os11t0621300-01
Chr11	irgsp1_rep	five_prime_UTR	24224030	24224048	.	-	.	Parent=Os11t0621300-01
Chr11	irgsp1_rep	CDS	24223872	24224029	.	-	0	Parent=Os11t0621300-01
Chr11	irgsp1_rep	CDS	24222926	24223043	.	-	1	Parent=Os11t0621300-01
Chr11	irgsp1_rep	CDS	24222543	24222794	.	-	0	Parent=Os11t0621300-01
Chr11	irgsp1_rep	CDS	24221853	24222308	.	-	0	Parent=Os11t0621300-01
Chr11	irgsp1_rep	CDS	24221031	24221563	.	-	0	Parent=Os11t0621300-01
Chr11	irgsp1_rep	CDS	24220481	24220676	.	-	1	Parent=Os11t0621300-01
Chr11	irgsp1_rep	CDS	24220218	24220376	.	-	0	Parent=Os11t0621300-01
Chr11	irgsp1_rep	CDS	24219144	24220064	.	-	0	Parent=Os11t0621300-01
Chr11	irgsp1_rep	three_prime_UTR	24218780	24219143	.	-	.	Parent=Os11t0621300-01
Chr11	irgsp1_rep	mRNA	24226400	24227678	.	-	.	ID=Os11t0621400-01;Name=Os11t0621400-01;Locus_id=Os11g0621400;Note=Conserved hypothetical protein.;Transcript_evidence=AK062468 (DDBJ%2C Best hit);ORF_evidence=A2ZGG1 (UniProt);NIAS_FLcDNA=001-103-E04;TENOR=Os11t0621400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	24227637	24227678	.	-	.	Parent=Os11t0621400-01
Chr11	irgsp1_rep	CDS	24227552	24227636	.	-	0	Parent=Os11t0621400-01
Chr11	irgsp1_rep	CDS	24226745	24226950	.	-	2	Parent=Os11t0621400-01
Chr11	irgsp1_rep	CDS	24226556	24226660	.	-	0	Parent=Os11t0621400-01
Chr11	irgsp1_rep	three_prime_UTR	24226400	24226555	.	-	.	Parent=Os11t0621400-01
Chr11	irgsp1_rep	mRNA	24230431	24233404	.	+	.	ID=Os11t0621500-01;Name=Os11t0621500-01;Locus_id=Os11g0621500;Oryzabase Gene Symbol Synonym(s)=ELF4_Chr.11;Note=Similar to EARLY FLOWERING 4 (Fragment).;Transcript_evidence=AK068037 (DDBJ%2C Best hit);ORF_evidence=C6ZKI6 (UniProt);InterPro=Protein of unknown function DUF1313 (IPR009741);NIAS_FLcDNA=J013132K16;Oryzabase=19303;Expression=AK068037;TENOR=Os11t0621500-01;KEGG=Os11t0621500-01
Chr11	irgsp1_rep	five_prime_UTR	24230431	24230522	.	+	.	Parent=Os11t0621500-01
Chr11	irgsp1_rep	five_prime_UTR	24232468	24232562	.	+	.	Parent=Os11t0621500-01
Chr11	irgsp1_rep	CDS	24232563	24232916	.	+	0	Parent=Os11t0621500-01
Chr11	irgsp1_rep	three_prime_UTR	24232917	24233404	.	+	.	Parent=Os11t0621500-01
Chr11	irgsp1_rep	mRNA	24233058	24233443	.	+	.	ID=Os11t0621500-02;Name=Os11t0621500-02;Locus_id=Os11g0621500;Oryzabase Gene Symbol Synonym(s)=ELF4_Chr.11;Note=Non-protein coding transcript.;Transcript_evidence=AK059265 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-025-A12;Oryzabase=19303;TENOR=Os11t0621500-02
Chr11	irgsp1_rep	exon	24233058	24233443	.	+	.	Parent=Os11t0621500-02
Chr11	irgsp1_rep	mRNA	24267570	24268145	.	-	.	ID=Os11t0621825-00;Name=Os11t0621825-00;Locus_id=Os11g0621825;Note=Similar to Universal stress protein 1561.;Transcript_evidence=ab initio prediction;ORF_evidence=D2XV77 (UniProt);GO=Biological Process: response to stress (GO:0006950);InterPro=UspA (IPR006016),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);TENOR=Os11t0621825-00
Chr11	irgsp1_rep	CDS	24268114	24268145	.	-	0	Parent=Os11t0621825-00
Chr11	irgsp1_rep	CDS	24267949	24268014	.	-	1	Parent=Os11t0621825-00
Chr11	irgsp1_rep	CDS	24267570	24267762	.	-	1	Parent=Os11t0621825-00
Chr11	irgsp1_rep	mRNA	24270938	24271428	.	-	.	ID=Os11t0622150-00;Name=Os11t0622150-00;Locus_id=Os11g0622150;Note=Hypothetical conserved gene.;Transcript_evidence=EU972340 (DDBJ);ORF_evidence=Q7XXM9 (UniProt);TENOR=Os11t0622150-00;KEGG=Os11t0622150-00
Chr11	irgsp1_rep	CDS	24271075	24271428	.	-	0	Parent=Os11t0622150-00
Chr11	irgsp1_rep	three_prime_UTR	24270938	24271074	.	-	.	Parent=Os11t0622150-00
Chr11	irgsp1_rep	mRNA	24273616	24274255	.	+	.	ID=Os11t0622200-01;Name=Os11t0622200-01;Locus_id=Os11g0622200;Note=Hypothetical protein.;Transcript_evidence=AK111148 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-176-E12;Expression=AK111148;TENOR=Os11t0622200-01;KEGG=Os11t0622200-01
Chr11	irgsp1_rep	five_prime_UTR	24273616	24273618	.	+	.	Parent=Os11t0622200-01
Chr11	irgsp1_rep	CDS	24273619	24273912	.	+	0	Parent=Os11t0622200-01
Chr11	irgsp1_rep	three_prime_UTR	24273913	24274255	.	+	.	Parent=Os11t0622200-01
Chr11	irgsp1_rep	mRNA	24279005	24280117	.	-	.	ID=Os11t0622600-00;Name=Os11t0622600-00;Locus_id=Os11g0622600;Oryzabase Gene Symbol Synonym(s)=OsMB52%2C MB52;Oryzabase Gene Name Synonym(s)=MATH-BTB protein 52%2C MDC protein with a BTB domain 52%2C MDC protein having BTB domain 52;Note=TRAF-type domain containing protein.;Transcript_evidence=AK374230 (DDBJ);ORF_evidence=Q2R136 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);Oryzabase=21246;TENOR=Os11t0622600-00;KEGG=Os11t0622600-00
Chr11	irgsp1_rep	CDS	24279005	24280117	.	-	0	Parent=Os11t0622600-00
Chr11	irgsp1_rep	mRNA	24302517	24307849	.	-	.	ID=Os11t0622700-00;Name=Os11t0622700-00;Locus_id=Os11g0622700;Note=Non-protein coding transcript.;Transcript_evidence=tplb0028g09 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os11t0622700-00
Chr11	irgsp1_rep	exon	24307635	24307849	.	-	.	Parent=Os11t0622700-00
Chr11	irgsp1_rep	exon	24307321	24307446	.	-	.	Parent=Os11t0622700-00
Chr11	irgsp1_rep	exon	24306826	24307130	.	-	.	Parent=Os11t0622700-00
Chr11	irgsp1_rep	exon	24303535	24303782	.	-	.	Parent=Os11t0622700-00
Chr11	irgsp1_rep	exon	24303020	24303123	.	-	.	Parent=Os11t0622700-00
Chr11	irgsp1_rep	exon	24302517	24302603	.	-	.	Parent=Os11t0622700-00
Chr11	irgsp1_rep	mRNA	24302518	24307835	.	+	.	ID=Os11t0622800-00;Name=Os11t0622800-00;Locus_id=Os11g0622800;CGSNL Gene Symbol=CAD4;CGSNL Gene Name=CINNAMYL ALCOHOL DEHYDROGENASE 4;Oryzabase Gene Symbol Synonym(s)=OsCAD4;Oryzabase Gene Name Synonym(s)=Cinnamyl alcohol dehydrogenase 4;Note=Putative cinnamyl alcohol dehydrogenase 4.;Transcript_evidence=Q2R114 (UniProt);ORF_evidence=Q2R114 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747),Molecular Function: cofactor binding (GO:0048037);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),Alcohol dehydrogenase%2C zinc-type%2C conserved site (IPR002328),D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding (IPR006140),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),Alcohol dehydrogenase GroES-like (IPR013154),NAD(P)-binding domain (IPR016040),Polyketide synthase%2C enoylreductase (IPR020843);Oryzabase=10433;TENOR=Os11t0622800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	24302518	24302606	.	+	0	Parent=Os11t0622800-00
Chr11	irgsp1_rep	CDS	24303023	24303136	.	+	1	Parent=Os11t0622800-00
Chr11	irgsp1_rep	CDS	24303550	24303777	.	+	1	Parent=Os11t0622800-00
Chr11	irgsp1_rep	CDS	24306822	24307107	.	+	1	Parent=Os11t0622800-00
Chr11	irgsp1_rep	CDS	24307300	24307450	.	+	0	Parent=Os11t0622800-00
Chr11	irgsp1_rep	CDS	24307639	24307835	.	+	2	Parent=Os11t0622800-00
Chr11	irgsp1_rep	mRNA	24366983	24367591	.	-	.	ID=Os11t0623200-00;Name=Os11t0623200-00;Locus_id=Os11g0623200;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R109 (UniProt);TENOR=Os11t0623200-00
Chr11	irgsp1_rep	CDS	24366983	24367591	.	-	0	Parent=Os11t0623200-00
Chr11	irgsp1_rep	mRNA	24375028	24377233	.	-	.	ID=Os11t0623601-00;Name=Os11t0623601-00;Locus_id=Os11g0623601;Note=Citrate synthase-like domain containing protein.;Transcript_evidence=BT016982 (DDBJ);ORF_evidence=longestORF;GO=Biological Process: cellular carbohydrate metabolic process (GO:0044262),Molecular Function: transferase activity%2C transferring acyl groups%2C acyl groups converted into alkyl on transfer (GO:0046912);InterPro=Citrate synthase-like (IPR002020),Citrate synthase-like%2C core (IPR016141),Citrate synthase-like%2C large alpha subdomain (IPR016142);TENOR=Os11t0623601-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	24377229	24377233	.	-	.	Parent=Os11t0623601-00
Chr11	irgsp1_rep	CDS	24377193	24377228	.	-	0	Parent=Os11t0623601-00
Chr11	irgsp1_rep	CDS	24376351	24376437	.	-	0	Parent=Os11t0623601-00
Chr11	irgsp1_rep	CDS	24376092	24376191	.	-	0	Parent=Os11t0623601-00
Chr11	irgsp1_rep	CDS	24375755	24375789	.	-	2	Parent=Os11t0623601-00
Chr11	irgsp1_rep	three_prime_UTR	24375669	24375754	.	-	.	Parent=Os11t0623601-00
Chr11	irgsp1_rep	three_prime_UTR	24375356	24375494	.	-	.	Parent=Os11t0623601-00
Chr11	irgsp1_rep	three_prime_UTR	24375028	24375158	.	-	.	Parent=Os11t0623601-00
Chr11	irgsp1_rep	mRNA	24378519	24378666	.	+	.	ID=Os11t0623650-00;Name=Os11t0623650-00;Locus_id=Os11g0623650;Note=Non-protein coding transcript.;Transcript_evidence=BT065526 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0623650-00
Chr11	irgsp1_rep	exon	24378519	24378666	.	+	.	Parent=Os11t0623650-00
Chr11	irgsp1_rep	mRNA	24382955	24384066	.	+	.	ID=Os11t0623700-01;Name=Os11t0623700-01;Locus_id=Os11g0623700;Note=Conserved hypothetical protein.;Transcript_evidence=AK063799 (DDBJ%2C Best hit);ORF_evidence=NP_001053282.1 (RefSeq);NIAS_FLcDNA=001-121-F06;TENOR=Os11t0623700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	24382955	24383108	.	+	.	Parent=Os11t0623700-01
Chr11	irgsp1_rep	CDS	24383109	24383516	.	+	0	Parent=Os11t0623700-01
Chr11	irgsp1_rep	three_prime_UTR	24383517	24384066	.	+	.	Parent=Os11t0623700-01
Chr11	irgsp1_rep	mRNA	24387280	24390444	.	-	.	ID=Os11t0623800-00;Name=Os11t0623800-00;Locus_id=Os11g0623800;Oryzabase Gene Symbol Synonym(s)=Osh359-3%2C Osh359-5;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=EU685838 (DDBJ);ORF_evidence=P94056 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182),ATPase%2C AAA+ type%2C core (IPR003593);Oryzabase=14407;TENOR=Os11t0623800-00;KEGG=Os11t0623800-00
Chr11	irgsp1_rep	CDS	24387280	24390444	.	-	0	Parent=Os11t0623800-00
Chr11	irgsp1_rep	mRNA	24414689	24415797	.	+	.	ID=Os11t0624400-01;Name=Os11t0624400-01;Locus_id=Os11g0624400;Oryzabase Gene Symbol Synonym(s)=OsSTA267;Note=Protein of unknown function DUF295 domain containing protein.;Transcript_evidence=AK070535 (DDBJ%2C Best hit);ORF_evidence=Q2R103 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174);NIAS_FLcDNA=J023062H10;Oryzabase=19530;TENOR=Os11t0624400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	24414689	24414689	.	+	.	Parent=Os11t0624400-01
Chr11	irgsp1_rep	CDS	24414690	24415712	.	+	0	Parent=Os11t0624400-01
Chr11	irgsp1_rep	three_prime_UTR	24415713	24415797	.	+	.	Parent=Os11t0624400-01
Chr11	irgsp1_rep	mRNA	24485473	24486679	.	-	.	ID=Os11t0625400-00;Name=Os11t0625400-00;Locus_id=Os11g0625400;Note=Putative B3 domain-containing protein Os11g0625400.;Transcript_evidence=Q2R0Z3 (UniProt);ORF_evidence=Q2R0Z3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);TENOR=Os11t0625400-00
Chr11	irgsp1_rep	CDS	24486388	24486679	.	-	0	Parent=Os11t0625400-00
Chr11	irgsp1_rep	CDS	24486222	24486284	.	-	2	Parent=Os11t0625400-00
Chr11	irgsp1_rep	CDS	24485802	24485914	.	-	2	Parent=Os11t0625400-00
Chr11	irgsp1_rep	CDS	24485473	24485652	.	-	0	Parent=Os11t0625400-00
Chr11	irgsp1_rep	mRNA	24504245	24504966	.	-	.	ID=Os11t0625700-01;Name=Os11t0625700-01;Locus_id=Os11g0625700;Note=Hypothetical protein.;Transcript_evidence=AK063012 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-110-A06;Expression=AK063012;TENOR=Os11t0625700-01;KEGG=Os11t0625700-01
Chr11	irgsp1_rep	five_prime_UTR	24504912	24504966	.	-	.	Parent=Os11t0625700-01
Chr11	irgsp1_rep	five_prime_UTR	24504642	24504807	.	-	.	Parent=Os11t0625700-01
Chr11	irgsp1_rep	CDS	24504264	24504641	.	-	0	Parent=Os11t0625700-01
Chr11	irgsp1_rep	three_prime_UTR	24504245	24504263	.	-	.	Parent=Os11t0625700-01
Chr11	irgsp1_rep	mRNA	24504531	24507458	.	+	.	ID=Os11t0625801-01;Name=Os11t0625801-01;Locus_id=Os11g0625801;Note=Non-protein coding transcript.;Transcript_evidence=AK242125 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J075148C03;TENOR=Os11t0625801-01
Chr11	irgsp1_rep	exon	24504531	24507458	.	+	.	Parent=Os11t0625801-01
Chr11	irgsp1_rep	mRNA	24531519	24534761	.	+	.	ID=Os11t0625802-01;Name=Os11t0625802-01;Locus_id=Os11g0625802;Note=Non-protein coding transcript.;Transcript_evidence=AK288996 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090088B05;TENOR=Os11t0625802-01
Chr11	irgsp1_rep	exon	24531519	24534761	.	+	.	Parent=Os11t0625802-01
Chr11	irgsp1_rep	mRNA	24533715	24537481	.	-	.	ID=Os11t0625900-01;Name=Os11t0625900-01;Locus_id=Os11g0625900;Oryzabase Gene Name Synonym(s)=Leucine-rich repeat receptor-like kinase;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK065195 (DDBJ%2C Best hit);ORF_evidence=A3BNR8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013002E14;Oryzabase=19082;Expression=AK065195;TENOR=Os11t0625900-01;KEGG=Os11t0625900-01
Chr11	irgsp1_rep	five_prime_UTR	24537452	24537481	.	-	.	Parent=Os11t0625900-01
Chr11	irgsp1_rep	CDS	24534431	24537451	.	-	0	Parent=Os11t0625900-01
Chr11	irgsp1_rep	three_prime_UTR	24533715	24534430	.	-	.	Parent=Os11t0625900-01
Chr11	irgsp1_rep	mRNA	24561650	24570319	.	+	.	ID=Os11t0626700-01;Name=Os11t0626700-01;Locus_id=Os11g0626700;Note=Hypothetical conserved gene.;Transcript_evidence=AK072169 (DDBJ%2C Best hit);ORF_evidence=B8BLH0 (UniProt);NIAS_FLcDNA=J013132E11;TENOR=Os11t0626700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	24561650	24561684	.	+	.	Parent=Os11t0626700-01
Chr11	irgsp1_rep	CDS	24561685	24561805	.	+	0	Parent=Os11t0626700-01
Chr11	irgsp1_rep	CDS	24562428	24562558	.	+	2	Parent=Os11t0626700-01
Chr11	irgsp1_rep	three_prime_UTR	24562559	24564667	.	+	.	Parent=Os11t0626700-01
Chr11	irgsp1_rep	three_prime_UTR	24568154	24568288	.	+	.	Parent=Os11t0626700-01
Chr11	irgsp1_rep	three_prime_UTR	24568403	24568702	.	+	.	Parent=Os11t0626700-01
Chr11	irgsp1_rep	three_prime_UTR	24569844	24570319	.	+	.	Parent=Os11t0626700-01
Chr11	irgsp1_rep	mRNA	24561651	24562752	.	+	.	ID=Os11t0626700-02;Name=Os11t0626700-02;Locus_id=Os11g0626700;Note=Hypothetical conserved gene.;Transcript_evidence=AK120168 (DDBJ%2C Best hit);ORF_evidence=B8BLH0 (UniProt);NIAS_FLcDNA=J013031N10;Expression=AK120168;TENOR=Os11t0626700-02;KEGG=Os11t0626700-02
Chr11	irgsp1_rep	five_prime_UTR	24561651	24561684	.	+	.	Parent=Os11t0626700-02
Chr11	irgsp1_rep	CDS	24561685	24561805	.	+	0	Parent=Os11t0626700-02
Chr11	irgsp1_rep	CDS	24562428	24562558	.	+	2	Parent=Os11t0626700-02
Chr11	irgsp1_rep	three_prime_UTR	24562559	24562752	.	+	.	Parent=Os11t0626700-02
Chr11	irgsp1_rep	mRNA	24616115	24619613	.	+	.	ID=Os11t0628000-00;Name=Os11t0628000-00;Locus_id=Os11g0628000;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK369273 (DDBJ);ORF_evidence=NP_001176666.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os11t0628000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	24616115	24619067	.	+	0	Parent=Os11t0628000-00
Chr11	irgsp1_rep	CDS	24619216	24619580	.	+	2	Parent=Os11t0628000-00
Chr11	irgsp1_rep	three_prime_UTR	24619581	24619613	.	+	.	Parent=Os11t0628000-00
Chr11	irgsp1_rep	mRNA	24628996	24629376	.	-	.	ID=Os11t0628101-00;Name=Os11t0628101-00;Locus_id=Os11g0628101;Note=Non-protein coding transcript.;Transcript_evidence=EU945475 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0628101-00
Chr11	irgsp1_rep	exon	24628996	24629376	.	-	.	Parent=Os11t0628101-00
Chr11	irgsp1_rep	mRNA	24638208	24639893	.	+	.	ID=Os11t0629100-00;Name=Os11t0629100-00;Locus_id=Os11g0629100;Note=Conserved hypothetical protein.;Transcript_evidence=AK357472 (DDBJ);ORF_evidence=B8BLF6 (UniProt);TENOR=Os11t0629100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	24638208	24638493	.	+	0	Parent=Os11t0629100-00
Chr11	irgsp1_rep	CDS	24639046	24639872	.	+	2	Parent=Os11t0629100-00
Chr11	irgsp1_rep	three_prime_UTR	24639873	24639893	.	+	.	Parent=Os11t0629100-00
Chr11	irgsp1_rep	mRNA	24638369	24639376	.	-	.	ID=Os11t0629150-00;Name=Os11t0629150-00;Locus_id=Os11g0629150;Note=Non-protein coding transcript.;Transcript_evidence=AK361068 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0629150-00
Chr11	irgsp1_rep	exon	24638970	24639376	.	-	.	Parent=Os11t0629150-00
Chr11	irgsp1_rep	exon	24638369	24638529	.	-	.	Parent=Os11t0629150-00
Chr11	irgsp1_rep	mRNA	24642531	24646800	.	+	.	ID=Os11t0629200-01;Name=Os11t0629200-01;Locus_id=Os11g0629200;Note=Similar to Vacuolar sorting protein-like%3B embryogenesis protein H beta 58-like protein.;Transcript_evidence=AK065196 (DDBJ%2C Best hit);ORF_evidence=B6UEZ8 (UniProt);GO=Biological Process: vacuolar transport (GO:0007034),Cellular Component: retromer complex (GO:0030904);InterPro=Vacuolar protein sorting-associated protein 26 (IPR005377);NIAS_FLcDNA=J013002E16;Expression=AK065196;TENOR=Os11t0629200-01;KEGG=Os11t0629200-01
Chr11	irgsp1_rep	five_prime_UTR	24642531	24642695	.	+	.	Parent=Os11t0629200-01
Chr11	irgsp1_rep	CDS	24642696	24642698	.	+	0	Parent=Os11t0629200-01
Chr11	irgsp1_rep	CDS	24642774	24642848	.	+	0	Parent=Os11t0629200-01
Chr11	irgsp1_rep	CDS	24642954	24643028	.	+	0	Parent=Os11t0629200-01
Chr11	irgsp1_rep	CDS	24643246	24643318	.	+	0	Parent=Os11t0629200-01
Chr11	irgsp1_rep	CDS	24643677	24643721	.	+	2	Parent=Os11t0629200-01
Chr11	irgsp1_rep	CDS	24644110	24644221	.	+	2	Parent=Os11t0629200-01
Chr11	irgsp1_rep	CDS	24644352	24644418	.	+	1	Parent=Os11t0629200-01
Chr11	irgsp1_rep	CDS	24644722	24644766	.	+	0	Parent=Os11t0629200-01
Chr11	irgsp1_rep	CDS	24645850	24645905	.	+	0	Parent=Os11t0629200-01
Chr11	irgsp1_rep	CDS	24645992	24646167	.	+	1	Parent=Os11t0629200-01
Chr11	irgsp1_rep	CDS	24646296	24646483	.	+	2	Parent=Os11t0629200-01
Chr11	irgsp1_rep	three_prime_UTR	24646484	24646800	.	+	.	Parent=Os11t0629200-01
Chr11	irgsp1_rep	mRNA	24648048	24651676	.	+	.	ID=Os11t0629300-01;Name=Os11t0629300-01;Locus_id=Os11g0629300;RAP-DB Gene Symbol Synonym(s)=OsGIRP1%2C OsRFPH2-16;RAP-DB Gene Name Synonym(s)=gamma rays-induced RING finger protein1;Oryzabase Gene Symbol Synonym(s)=OsRFPH2-16%2C OsGIRP1;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPH2-16%2C RING-H2 protein 16%2C gamma rays-induced RING finger protein1%2C gamma rays-induced RING finger protein 1;Note=RING finger E3 ligase%2C Negative regulation of gamma-ray response;Transcript_evidence=AK120485;ORF_evidence=Q2R0W9;InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type (IPR001841);NIAS_FLcDNA=J013113A03;Manual Curation=June 25%2C 2020;Literature_PMID=25600999;Oryzabase=11777;Expression=AK120485;TENOR=Os11t0629300-01;KEGG=Os11t0629300-01;Subcellular location=cytosol (GO:0005829)
Chr11	irgsp1_rep	five_prime_UTR	24648048	24648245	.	+	.	Parent=Os11t0629300-01
Chr11	irgsp1_rep	five_prime_UTR	24648645	24648779	.	+	.	Parent=Os11t0629300-01
Chr11	irgsp1_rep	CDS	24648780	24648899	.	+	0	Parent=Os11t0629300-01
Chr11	irgsp1_rep	CDS	24649432	24649837	.	+	0	Parent=Os11t0629300-01
Chr11	irgsp1_rep	CDS	24650186	24650295	.	+	2	Parent=Os11t0629300-01
Chr11	irgsp1_rep	CDS	24651190	24651216	.	+	0	Parent=Os11t0629300-01
Chr11	irgsp1_rep	three_prime_UTR	24651217	24651676	.	+	.	Parent=Os11t0629300-01
Chr11	irgsp1_rep	mRNA	24651999	24653182	.	-	.	ID=Os11t0629400-01;Name=Os11t0629400-01;Locus_id=Os11g0629400;Note=Similar to Nitrilase associated protein-like.;Transcript_evidence=AK099444 (DDBJ%2C Best hit);ORF_evidence=B6SRE4 (UniProt);NIAS_FLcDNA=J013021F16;Expression=AK099444;TENOR=Os11t0629400-01;KEGG=Os11t0629400-01
Chr11	irgsp1_rep	five_prime_UTR	24653096	24653182	.	-	.	Parent=Os11t0629400-01
Chr11	irgsp1_rep	CDS	24652823	24653095	.	-	0	Parent=Os11t0629400-01
Chr11	irgsp1_rep	CDS	24652290	24652364	.	-	0	Parent=Os11t0629400-01
Chr11	irgsp1_rep	three_prime_UTR	24651999	24652289	.	-	.	Parent=Os11t0629400-01
Chr11	irgsp1_rep	mRNA	24655912	24659328	.	-	.	ID=Os11t0629500-01;Name=Os11t0629500-01;Locus_id=Os11g0629500;Note=Similar to Phosphoserine phosphatase%2C chloroplast precursor (EC 3.1.3.3) (PSP) (O-phosphoserine phosphohydrolase) (PSPase).;Transcript_evidence=AK072665 (DDBJ%2C Best hit);ORF_evidence=B6SU38 (UniProt);GO=Biological Process: L-serine biosynthetic process (GO:0006564),Biological Process: metabolic process (GO:0008152),Molecular Function: phosphoserine phosphatase activity (GO:0004647),Molecular Function: phosphatase activity (GO:0016791);InterPro=Phosphoserine phosphatase SerB (IPR004469),HAD-superfamily hydrolase%2C subfamily IB%2C PSPase-like (IPR006383),Phosphoserine phosphatase%2C domain 2 (IPR023190),HAD-like domain (IPR023214);NIAS_FLcDNA=J023133N19;Expression=AK072665;TENOR=Os11t0629500-01;KEGG=Os11t0629500-01 (EC:3.1.3.3)
Chr11	irgsp1_rep	five_prime_UTR	24659200	24659328	.	-	.	Parent=Os11t0629500-01
Chr11	irgsp1_rep	five_prime_UTR	24658841	24658851	.	-	.	Parent=Os11t0629500-01
Chr11	irgsp1_rep	CDS	24658615	24658840	.	-	0	Parent=Os11t0629500-01
Chr11	irgsp1_rep	CDS	24658373	24658505	.	-	2	Parent=Os11t0629500-01
Chr11	irgsp1_rep	CDS	24658172	24658279	.	-	1	Parent=Os11t0629500-01
Chr11	irgsp1_rep	CDS	24657631	24657724	.	-	1	Parent=Os11t0629500-01
Chr11	irgsp1_rep	CDS	24657102	24657251	.	-	0	Parent=Os11t0629500-01
Chr11	irgsp1_rep	CDS	24656971	24657024	.	-	0	Parent=Os11t0629500-01
Chr11	irgsp1_rep	CDS	24656163	24656288	.	-	0	Parent=Os11t0629500-01
Chr11	irgsp1_rep	three_prime_UTR	24655912	24656162	.	-	.	Parent=Os11t0629500-01
Chr11	irgsp1_rep	mRNA	24663927	24666765	.	+	.	ID=Os11t0629550-00;Name=Os11t0629550-00;Locus_id=Os11g0629550;Note=Similar to Disease resistance protein RPM1 homolog.;Transcript_evidence=CT835674 (DDBJ%2C Best hit);ORF_evidence=Q9XEQ9 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os11t0629550-00
Chr11	irgsp1_rep	five_prime_UTR	24663927	24664390	.	+	.	Parent=Os11t0629550-00
Chr11	irgsp1_rep	CDS	24664391	24664404	.	+	0	Parent=Os11t0629550-00
Chr11	irgsp1_rep	CDS	24664512	24665396	.	+	1	Parent=Os11t0629550-00
Chr11	irgsp1_rep	CDS	24665723	24666765	.	+	1	Parent=Os11t0629550-00
Chr11	irgsp1_rep	mRNA	24664582	24667693	.	-	.	ID=Os11t0629566-00;Name=Os11t0629566-00;Locus_id=Os11g0629566;Note=Hypothetical protein.;Transcript_evidence=tplb0040n12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0629566-00
Chr11	irgsp1_rep	five_prime_UTR	24665727	24667693	.	-	.	Parent=Os11t0629566-00
Chr11	irgsp1_rep	five_prime_UTR	24664936	24665399	.	-	.	Parent=Os11t0629566-00
Chr11	irgsp1_rep	CDS	24664582	24664935	.	-	0	Parent=Os11t0629566-00
Chr11	irgsp1_rep	mRNA	24667206	24667700	.	+	.	ID=Os11t0629582-00;Name=Os11t0629582-00;Locus_id=Os11g0629582;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G8E5 (UniProt);TENOR=Os11t0629582-00
Chr11	irgsp1_rep	CDS	24667206	24667700	.	+	0	Parent=Os11t0629582-00
Chr11	irgsp1_rep	mRNA	24670967	24674337	.	+	.	ID=Os11t0629600-01;Name=Os11t0629600-01;Locus_id=Os11g0629600;Note=NB-ARC domain containing protein.;Transcript_evidence=AK119302 (DDBJ%2C Best hit);ORF_evidence=B9G8E5 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);NIAS_FLcDNA=001-130-F02;TENOR=Os11t0629600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	24670967	24670968	.	+	.	Parent=Os11t0629600-01
Chr11	irgsp1_rep	CDS	24670969	24672705	.	+	0	Parent=Os11t0629600-01
Chr11	irgsp1_rep	three_prime_UTR	24672706	24674337	.	+	.	Parent=Os11t0629600-01
Chr11	irgsp1_rep	mRNA	24671541	24672856	.	+	.	ID=Os11t0629600-02;Name=Os11t0629600-02;Locus_id=Os11g0629600;Note=Similar to Leucine Rich Repeat family protein%2C expressed.;Transcript_evidence=AK105472 (DDBJ%2C Best hit);ORF_evidence=Q2R0W6 (UniProt);NIAS_FLcDNA=001-127-A02;TENOR=Os11t0629600-02;KEGG=Os11t0629600-02
Chr11	irgsp1_rep	five_prime_UTR	24671541	24671541	.	+	.	Parent=Os11t0629600-02
Chr11	irgsp1_rep	CDS	24671542	24672705	.	+	0	Parent=Os11t0629600-02
Chr11	irgsp1_rep	three_prime_UTR	24672706	24672856	.	+	.	Parent=Os11t0629600-02
Chr11	irgsp1_rep	mRNA	24688036	24694370	.	+	.	ID=Os11t0629900-00;Name=Os11t0629900-00;Locus_id=Os11g0629900;Note=Conserved hypothetical protein.;Transcript_evidence=AK288199 (DDBJ%2C Secondary hit);ORF_evidence=Q2R0W5 (UniProt);TENOR=Os11t0629900-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	24688036	24688240	.	+	.	Parent=Os11t0629900-00
Chr11	irgsp1_rep	CDS	24688241	24688462	.	+	0	Parent=Os11t0629900-00
Chr11	irgsp1_rep	three_prime_UTR	24688463	24694370	.	+	.	Parent=Os11t0629900-00
Chr11	irgsp1_rep	mRNA	24716906	24719902	.	+	.	ID=Os11t0630300-01;Name=Os11t0630300-01;Locus_id=Os11g0630300;Note=Conserved hypothetical protein.;Transcript_evidence=AK066681 (DDBJ%2C Best hit);ORF_evidence=B9G8E6 (UniProt);NIAS_FLcDNA=J013068H12;TENOR=Os11t0630300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	24716906	24718719	.	+	.	Parent=Os11t0630300-01
Chr11	irgsp1_rep	CDS	24718720	24718980	.	+	0	Parent=Os11t0630300-01
Chr11	irgsp1_rep	three_prime_UTR	24718981	24719902	.	+	.	Parent=Os11t0630300-01
Chr11	irgsp1_rep	mRNA	24733779	24734420	.	+	.	ID=Os11t0630501-00;Name=Os11t0630501-00;Locus_id=Os11g0630501;Note=Similar to BTB/POZ domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R0V7 (UniProt);TENOR=Os11t0630501-00
Chr11	irgsp1_rep	CDS	24733779	24734420	.	+	0	Parent=Os11t0630501-00
Chr11	irgsp1_rep	mRNA	24735670	24737370	.	+	.	ID=Os11t0630700-00;Name=Os11t0630700-00;Locus_id=Os11g0630700;Oryzabase Gene Symbol Synonym(s)=Os2M2B1%2C 2M2B1;Oryzabase Gene Name Synonym(s)=two MATH along with two BTB domains containing MDC protein 1%2C MDC protein having two MATH domains along with two BTB domains 1;Note=Similar to BTB/POZ domain containing protein.;Transcript_evidence=EU961926 (DDBJ);ORF_evidence=Q2R0V7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);Oryzabase=21250;TENOR=Os11t0630700-00;KEGG=Os11t0630700-00
Chr11	irgsp1_rep	CDS	24735670	24737370	.	+	0	Parent=Os11t0630700-00
Chr11	irgsp1_rep	mRNA	24750529	24751629	.	+	.	ID=Os11t0630900-01;Name=Os11t0630900-01;Locus_id=Os11g0630900;Note=Similar to BTB/POZ domain containing protein.;Transcript_evidence=AK107482 (DDBJ%2C Best hit);ORF_evidence=Q2R0V2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=MATH (IPR002083),TRAF-like (IPR008974),TRAF-type (IPR013322);NIAS_FLcDNA=002-129-C05;TENOR=Os11t0630900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	24750529	24750556	.	+	.	Parent=Os11t0630900-01
Chr11	irgsp1_rep	CDS	24750557	24751282	.	+	0	Parent=Os11t0630900-01
Chr11	irgsp1_rep	three_prime_UTR	24751283	24751629	.	+	.	Parent=Os11t0630900-01
Chr11	irgsp1_rep	mRNA	24756166	24757242	.	+	.	ID=Os11t0631100-00;Name=Os11t0631100-00;Locus_id=Os11g0631100;Note=Similar to BTB/POZ domain containing protein.;Transcript_evidence=EU961926 (DDBJ);ORF_evidence=Q2R0V3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),MATH (IPR002083),TRAF-like (IPR008974),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069),TRAF-type (IPR013322);TENOR=Os11t0631100-00;KEGG=Os11t0631100-00
Chr11	irgsp1_rep	CDS	24756166	24757242	.	+	0	Parent=Os11t0631100-00
Chr11	irgsp1_rep	mRNA	24797306	24797659	.	+	.	ID=Os11t0631400-00;Name=Os11t0631400-00;Locus_id=Os11g0631400;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B8A6M1 (UniProt);TENOR=Os11t0631400-00;KEGG=Os11t0631400-00
Chr11	irgsp1_rep	CDS	24797306	24797659	.	+	0	Parent=Os11t0631400-00
Chr11	irgsp1_rep	mRNA	24808421	24811355	.	+	.	ID=Os11t0631450-01;Name=Os11t0631450-01;Locus_id=Os11g0631450;Note=Hypothetical gene.;Transcript_evidence=AK288488 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090040I02;TENOR=Os11t0631450-01;KEGG=Os11t0631450-01
Chr11	irgsp1_rep	five_prime_UTR	24808421	24809699	.	+	.	Parent=Os11t0631450-01
Chr11	irgsp1_rep	CDS	24809700	24810740	.	+	0	Parent=Os11t0631450-01
Chr11	irgsp1_rep	three_prime_UTR	24810741	24811355	.	+	.	Parent=Os11t0631450-01
Chr11	irgsp1_rep	mRNA	24812937	24813608	.	+	.	ID=Os11t0631600-00;Name=Os11t0631600-00;Locus_id=Os11g0631600;Oryzabase Gene Symbol Synonym(s)=OsM8%2C M8%2C OsM8a;Oryzabase Gene Name Synonym(s)=single domain MDC protein 8%2C single MATH domain containing protein 8;Note=MATH domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001176670.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=MATH (IPR002083),TRAF-like (IPR008974),TRAF-type (IPR013322);Oryzabase=21189;TENOR=Os11t0631600-00;KEGG=Os11t0631600-00
Chr11	irgsp1_rep	CDS	24812937	24813608	.	+	0	Parent=Os11t0631600-00
Chr11	irgsp1_rep	mRNA	24824252	24825165	.	+	.	ID=Os11t0631800-01;Name=Os11t0631800-01;Locus_id=Os11g0631800;Note=Non-protein coding transcript.;Transcript_evidence=AK108129 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-139-D08;TENOR=Os11t0631800-01
Chr11	irgsp1_rep	exon	24824252	24824820	.	+	.	Parent=Os11t0631800-01
Chr11	irgsp1_rep	exon	24824927	24825165	.	+	.	Parent=Os11t0631800-01
Chr11	irgsp1_rep	mRNA	24825414	24829193	.	-	.	ID=Os11t0631825-01;Name=Os11t0631825-01;Locus_id=Os11g0631825;Note=Conserved hypothetical protein.;Transcript_evidence=AK288468 (DDBJ%2C Best hit);ORF_evidence=Q7XQU5 (UniProt);NIAS_FLcDNA=J090036P20;TENOR=Os11t0631825-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	24828017	24829193	.	-	.	Parent=Os11t0631825-01
Chr11	irgsp1_rep	CDS	24827789	24828016	.	-	0	Parent=Os11t0631825-01
Chr11	irgsp1_rep	three_prime_UTR	24825414	24827788	.	-	.	Parent=Os11t0631825-01
Chr11	irgsp1_rep	mRNA	24828010	24832958	.	+	.	ID=Os11t0631900-01;Name=Os11t0631900-01;Locus_id=Os11g0631900;Note=Domain of unknown function DUF591 domain containing protein.;Transcript_evidence=AK107071 (DDBJ%2C Best hit);ORF_evidence=Q2R0U6 (UniProt);InterPro=Domain of unknown function DUF591 (IPR007649);NIAS_FLcDNA=002-121-E11;TENOR=Os11t0631900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	24828010	24828095	.	+	.	Parent=Os11t0631900-01
Chr11	irgsp1_rep	CDS	24828096	24828102	.	+	0	Parent=Os11t0631900-01
Chr11	irgsp1_rep	CDS	24830322	24830635	.	+	2	Parent=Os11t0631900-01
Chr11	irgsp1_rep	three_prime_UTR	24830636	24832958	.	+	.	Parent=Os11t0631900-01
Chr11	irgsp1_rep	mRNA	24847426	24853969	.	-	.	ID=Os11t0632200-01;Name=Os11t0632200-01;Locus_id=Os11g0632200;Note=Myb/SANT-like domain domain containing protein.;Transcript_evidence=AK102163 (DDBJ%2C Best hit);ORF_evidence=B9G2B3 (UniProt);InterPro=Myb/SANT-like domain (IPR024752);NIAS_FLcDNA=J033086H01;TENOR=Os11t0632200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	24853851	24853969	.	-	.	Parent=Os11t0632200-01
Chr11	irgsp1_rep	five_prime_UTR	24853667	24853762	.	-	.	Parent=Os11t0632200-01
Chr11	irgsp1_rep	CDS	24853624	24853666	.	-	0	Parent=Os11t0632200-01
Chr11	irgsp1_rep	CDS	24848350	24848705	.	-	2	Parent=Os11t0632200-01
Chr11	irgsp1_rep	three_prime_UTR	24848329	24848349	.	-	.	Parent=Os11t0632200-01
Chr11	irgsp1_rep	three_prime_UTR	24847426	24848254	.	-	.	Parent=Os11t0632200-01
Chr11	irgsp1_rep	mRNA	24911501	24917044	.	+	.	ID=Os11t0633500-01;Name=Os11t0633500-01;Locus_id=Os11g0633500;Note=Similar to NBS-LRR disease resistance protein homologue (Fragment).;Transcript_evidence=AK066215 (DDBJ%2C Best hit);ORF_evidence=B7UBD5 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013055N19;Expression=AK066215;TENOR=Os11t0633500-01;KEGG=Os11t0633500-01
Chr11	irgsp1_rep	five_prime_UTR	24911501	24911615	.	+	.	Parent=Os11t0633500-01
Chr11	irgsp1_rep	five_prime_UTR	24911928	24913388	.	+	.	Parent=Os11t0633500-01
Chr11	irgsp1_rep	CDS	24913389	24914965	.	+	0	Parent=Os11t0633500-01
Chr11	irgsp1_rep	CDS	24915268	24915277	.	+	1	Parent=Os11t0633500-01
Chr11	irgsp1_rep	three_prime_UTR	24915278	24916290	.	+	.	Parent=Os11t0633500-01
Chr11	irgsp1_rep	three_prime_UTR	24916707	24917044	.	+	.	Parent=Os11t0633500-01
Chr11	irgsp1_rep	mRNA	24927519	24928093	.	+	.	ID=Os11t0633600-01;Name=Os11t0633600-01;Locus_id=Os11g0633600;Note=Hypothetical gene.;Transcript_evidence=AK111279 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=002-180-G12;Expression=AK111279;TENOR=Os11t0633600-01;KEGG=Os11t0633600-01
Chr11	irgsp1_rep	five_prime_UTR	24927519	24927613	.	+	.	Parent=Os11t0633600-01
Chr11	irgsp1_rep	CDS	24927614	24927832	.	+	0	Parent=Os11t0633600-01
Chr11	irgsp1_rep	three_prime_UTR	24927833	24928093	.	+	.	Parent=Os11t0633600-01
Chr11	irgsp1_rep	mRNA	24932541	24935140	.	+	.	ID=Os11t0633800-01;Name=Os11t0633800-01;Locus_id=Os11g0633800;Oryzabase Gene Symbol Synonym(s)=OsFbox627%2C Os_F0089;Oryzabase Gene Name Synonym(s)=F-box protein 627;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK099786 (DDBJ%2C Best hit);ORF_evidence=Q2R0S6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013096K20;Oryzabase=17388;Expression=AK099786;TENOR=Os11t0633800-01;KEGG=Os11t0633800-01
Chr11	irgsp1_rep	five_prime_UTR	24932541	24932571	.	+	.	Parent=Os11t0633800-01
Chr11	irgsp1_rep	CDS	24932572	24933521	.	+	0	Parent=Os11t0633800-01
Chr11	irgsp1_rep	CDS	24934412	24935033	.	+	1	Parent=Os11t0633800-01
Chr11	irgsp1_rep	three_prime_UTR	24935034	24935140	.	+	.	Parent=Os11t0633800-01
Chr11	irgsp1_rep	mRNA	24950810	24952652	.	-	.	ID=Os11t0634200-01;Name=Os11t0634200-01;Locus_id=Os11g0634200;Note=Conserved hypothetical protein.;Transcript_evidence=AK066700 (DDBJ%2C Best hit);ORF_evidence=A2YDE6 (UniProt);NIAS_FLcDNA=J013073J21;Expression=AK066700;TENOR=Os11t0634200-01;KEGG=Os11t0634200-01
Chr11	irgsp1_rep	five_prime_UTR	24952497	24952652	.	-	.	Parent=Os11t0634200-01
Chr11	irgsp1_rep	five_prime_UTR	24951706	24951786	.	-	.	Parent=Os11t0634200-01
Chr11	irgsp1_rep	CDS	24951646	24951705	.	-	0	Parent=Os11t0634200-01
Chr11	irgsp1_rep	CDS	24950970	24951539	.	-	0	Parent=Os11t0634200-01
Chr11	irgsp1_rep	three_prime_UTR	24950810	24950969	.	-	.	Parent=Os11t0634200-01
Chr11	irgsp1_rep	mRNA	24958875	24960194	.	-	.	ID=Os11t0634350-01;Name=Os11t0634350-01;Locus_id=Os11g0634350;Note=Non-protein coding transcript.;Transcript_evidence=AK241817 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065211J08;TENOR=Os11t0634350-01
Chr11	irgsp1_rep	exon	24958875	24960194	.	-	.	Parent=Os11t0634350-01
Chr11	irgsp1_rep	mRNA	24973683	24975298	.	+	.	ID=Os11t0634500-00;Name=Os11t0634500-00;Locus_id=Os11g0634500;Note=40S ribosomal protein S29.;Transcript_evidence=CU406827 (DDBJ%2C Best hit);ORF_evidence=B6T147 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S14 (IPR001209);TENOR=Os11t0634500-00;KEGG=Os11t0634500-00
Chr11	irgsp1_rep	five_prime_UTR	24973683	24973758	.	+	.	Parent=Os11t0634500-00
Chr11	irgsp1_rep	CDS	24973759	24973820	.	+	0	Parent=Os11t0634500-00
Chr11	irgsp1_rep	CDS	24974664	24974763	.	+	1	Parent=Os11t0634500-00
Chr11	irgsp1_rep	CDS	24975042	24975050	.	+	0	Parent=Os11t0634500-00
Chr11	irgsp1_rep	three_prime_UTR	24975051	24975298	.	+	.	Parent=Os11t0634500-00
Chr11	irgsp1_rep	mRNA	24980227	24984249	.	+	.	ID=Os11t0634700-00;Name=Os11t0634700-00;Locus_id=Os11g0634700;Oryzabase Gene Symbol Synonym(s)=OsbHLH132%2C bHLH132%2C OsRSL7%2C RSL7;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 132%2C ROOT HAIR DEFECTIVE-SIX LIKE 7;Note=Similar to Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R0R9 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);Oryzabase=15410;TENOR=Os11t0634700-00
Chr11	irgsp1_rep	CDS	24980227	24980441	.	+	0	Parent=Os11t0634700-00
Chr11	irgsp1_rep	CDS	24982830	24983277	.	+	1	Parent=Os11t0634700-00
Chr11	irgsp1_rep	CDS	24983351	24983539	.	+	0	Parent=Os11t0634700-00
Chr11	irgsp1_rep	CDS	24983624	24983689	.	+	0	Parent=Os11t0634700-00
Chr11	irgsp1_rep	CDS	24983805	24983870	.	+	0	Parent=Os11t0634700-00
Chr11	irgsp1_rep	CDS	24984154	24984249	.	+	0	Parent=Os11t0634700-00
Chr11	irgsp1_rep	mRNA	24989004	24993250	.	+	.	ID=Os11t0634800-00;Name=Os11t0634800-00;Locus_id=Os11g0634800;Note=Similar to Adenylyl-sulfate kinase.;Transcript_evidence=FP100205 (DDBJ);ORF_evidence=Q2R0R8 (UniProt);GO=Biological Process: sulfate assimilation (GO:0000103),Molecular Function: ATP binding (GO:0005524),Molecular Function: kinase activity (GO:0016301),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Adenylylsulphate kinase%2C C-terminal (IPR002891);TENOR=Os11t0634800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	24989004	24989023	.	+	.	Parent=Os11t0634800-00
Chr11	irgsp1_rep	CDS	24989024	24989287	.	+	0	Parent=Os11t0634800-00
Chr11	irgsp1_rep	CDS	24992075	24992204	.	+	0	Parent=Os11t0634800-00
Chr11	irgsp1_rep	CDS	24992305	24992454	.	+	2	Parent=Os11t0634800-00
Chr11	irgsp1_rep	CDS	24992549	24992667	.	+	2	Parent=Os11t0634800-00
Chr11	irgsp1_rep	CDS	24992774	24992858	.	+	0	Parent=Os11t0634800-00
Chr11	irgsp1_rep	CDS	24992930	24992976	.	+	2	Parent=Os11t0634800-00
Chr11	irgsp1_rep	CDS	24993134	24993232	.	+	0	Parent=Os11t0634800-00
Chr11	irgsp1_rep	three_prime_UTR	24993233	24993250	.	+	.	Parent=Os11t0634800-00
Chr11	irgsp1_rep	mRNA	24989149	24993465	.	-	.	ID=Os11t0634902-01;Name=Os11t0634902-01;Locus_id=Os11g0634902;Note=Non-protein coding transcript.;Transcript_evidence=AK241117 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065093M12;TENOR=Os11t0634902-01
Chr11	irgsp1_rep	exon	24993134	24993465	.	-	.	Parent=Os11t0634902-01
Chr11	irgsp1_rep	exon	24992930	24992976	.	-	.	Parent=Os11t0634902-01
Chr11	irgsp1_rep	exon	24992774	24992858	.	-	.	Parent=Os11t0634902-01
Chr11	irgsp1_rep	exon	24992305	24992667	.	-	.	Parent=Os11t0634902-01
Chr11	irgsp1_rep	exon	24992064	24992204	.	-	.	Parent=Os11t0634902-01
Chr11	irgsp1_rep	exon	24989149	24989297	.	-	.	Parent=Os11t0634902-01
Chr11	irgsp1_rep	mRNA	25004867	25009215	.	-	.	ID=Os11t0635000-01;Name=Os11t0635000-01;Locus_id=Os11g0635000;Note=Conserved hypothetical protein.;Transcript_evidence=AK071927 (DDBJ%2C Best hit);ORF_evidence=A2ZC24 (UniProt);NIAS_FLcDNA=J013069M04;Expression=AK071927;TENOR=Os11t0635000-01;KEGG=Os11t0635000-01
Chr11	irgsp1_rep	five_prime_UTR	25009000	25009215	.	-	.	Parent=Os11t0635000-01
Chr11	irgsp1_rep	CDS	25008674	25008999	.	-	0	Parent=Os11t0635000-01
Chr11	irgsp1_rep	CDS	25008167	25008190	.	-	1	Parent=Os11t0635000-01
Chr11	irgsp1_rep	CDS	25006910	25007147	.	-	1	Parent=Os11t0635000-01
Chr11	irgsp1_rep	three_prime_UTR	25004867	25006909	.	-	.	Parent=Os11t0635000-01
Chr11	irgsp1_rep	mRNA	25021621	25023695	.	+	.	ID=Os11t0635300-00;Name=Os11t0635300-00;Locus_id=Os11g0635300;Note=Similar to CytoChrome P450 family protein.;Transcript_evidence=CT828216 (DDBJ%2C Best hit);ORF_evidence=Q2R0R5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os11t0635300-00;KEGG=Os11t0635300-00
Chr11	irgsp1_rep	five_prime_UTR	25021621	25021621	.	+	.	Parent=Os11t0635300-00
Chr11	irgsp1_rep	CDS	25021622	25022074	.	+	0	Parent=Os11t0635300-00
Chr11	irgsp1_rep	CDS	25022195	25022731	.	+	0	Parent=Os11t0635300-00
Chr11	irgsp1_rep	CDS	25022826	25023452	.	+	0	Parent=Os11t0635300-00
Chr11	irgsp1_rep	three_prime_UTR	25023453	25023695	.	+	.	Parent=Os11t0635300-00
Chr11	irgsp1_rep	mRNA	25021742	25023371	.	-	.	ID=Os11t0635400-00;Name=Os11t0635400-00;Locus_id=Os11g0635400;Note=Hypothetical protein.;Transcript_evidence=tplb0024g24 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0635400-00
Chr11	irgsp1_rep	five_prime_UTR	25022952	25023371	.	-	.	Parent=Os11t0635400-00
Chr11	irgsp1_rep	CDS	25022824	25022951	.	-	0	Parent=Os11t0635400-00
Chr11	irgsp1_rep	CDS	25022506	25022740	.	-	1	Parent=Os11t0635400-00
Chr11	irgsp1_rep	three_prime_UTR	25022189	25022505	.	-	.	Parent=Os11t0635400-00
Chr11	irgsp1_rep	three_prime_UTR	25021742	25022067	.	-	.	Parent=Os11t0635400-00
Chr11	irgsp1_rep	mRNA	25040876	25042999	.	+	.	ID=Os11t0635500-01;Name=Os11t0635500-01;Locus_id=Os11g0635500;Note=CytoChrome P450 family protein.;Transcript_evidence=AK067543 (DDBJ%2C Best hit);ORF_evidence=Q2R0R5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J013112D07;Expression=AK067543;TENOR=Os11t0635500-01;KEGG=Os11t0635500-01
Chr11	irgsp1_rep	five_prime_UTR	25040876	25040959	.	+	.	Parent=Os11t0635500-01
Chr11	irgsp1_rep	CDS	25040960	25041334	.	+	0	Parent=Os11t0635500-01
Chr11	irgsp1_rep	CDS	25041453	25041989	.	+	0	Parent=Os11t0635500-01
Chr11	irgsp1_rep	CDS	25042083	25042709	.	+	0	Parent=Os11t0635500-01
Chr11	irgsp1_rep	three_prime_UTR	25042710	25042999	.	+	.	Parent=Os11t0635500-01
Chr11	irgsp1_rep	mRNA	25100477	25103289	.	-	.	ID=Os11t0636050-00;Name=Os11t0636050-00;Locus_id=Os11g0636050;Note=Hypothetical protein.;Transcript_evidence=AK241146 (DDBJ%2C Secondary hit);ORF_evidence=GeneMark;TENOR=Os11t0636050-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	25103159	25103289	.	-	0	Parent=Os11t0636050-00
Chr11	irgsp1_rep	CDS	25102693	25102894	.	-	1	Parent=Os11t0636050-00
Chr11	irgsp1_rep	CDS	25102519	25102590	.	-	0	Parent=Os11t0636050-00
Chr11	irgsp1_rep	CDS	25102225	25102497	.	-	0	Parent=Os11t0636050-00
Chr11	irgsp1_rep	CDS	25102020	25102148	.	-	0	Parent=Os11t0636050-00
Chr11	irgsp1_rep	CDS	25101657	25101947	.	-	0	Parent=Os11t0636050-00
Chr11	irgsp1_rep	three_prime_UTR	25101632	25101656	.	-	.	Parent=Os11t0636050-00
Chr11	irgsp1_rep	three_prime_UTR	25101494	25101618	.	-	.	Parent=Os11t0636050-00
Chr11	irgsp1_rep	three_prime_UTR	25101241	25101339	.	-	.	Parent=Os11t0636050-00
Chr11	irgsp1_rep	three_prime_UTR	25100477	25100996	.	-	.	Parent=Os11t0636050-00
Chr11	irgsp1_rep	mRNA	25134253	25135830	.	+	.	ID=Os11t0636600-01;Name=Os11t0636600-01;Locus_id=Os11g0636600;Note=Conserved hypothetical protein.;Transcript_evidence=AK107824 (DDBJ%2C Best hit);ORF_evidence=Q8S7N2 (UniProt);NIAS_FLcDNA=002-133-G05;TENOR=Os11t0636600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	25134253	25134254	.	+	.	Parent=Os11t0636600-01
Chr11	irgsp1_rep	CDS	25134255	25134410	.	+	0	Parent=Os11t0636600-01
Chr11	irgsp1_rep	three_prime_UTR	25134411	25134550	.	+	.	Parent=Os11t0636600-01
Chr11	irgsp1_rep	three_prime_UTR	25134800	25134961	.	+	.	Parent=Os11t0636600-01
Chr11	irgsp1_rep	three_prime_UTR	25135346	25135830	.	+	.	Parent=Os11t0636600-01
Chr11	irgsp1_rep	mRNA	25134254	25137270	.	+	.	ID=Os11t0636600-02;Name=Os11t0636600-02;Locus_id=Os11g0636600;Note=Conserved hypothetical protein.;Transcript_evidence=AK062375 (DDBJ%2C Best hit);ORF_evidence=Q8S7N2 (UniProt);NIAS_FLcDNA=001-102-A12;TENOR=Os11t0636600-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	25134254	25134254	.	+	.	Parent=Os11t0636600-02
Chr11	irgsp1_rep	CDS	25134255	25134410	.	+	0	Parent=Os11t0636600-02
Chr11	irgsp1_rep	three_prime_UTR	25134411	25134550	.	+	.	Parent=Os11t0636600-02
Chr11	irgsp1_rep	three_prime_UTR	25134800	25134961	.	+	.	Parent=Os11t0636600-02
Chr11	irgsp1_rep	three_prime_UTR	25137091	25137270	.	+	.	Parent=Os11t0636600-02
Chr11	irgsp1_rep	mRNA	25148742	25153451	.	-	.	ID=Os11t0636900-01;Name=Os11t0636900-01;Locus_id=Os11g0636900;Note=Similar to Splicing factor U2af large subunit A.;Transcript_evidence=AK059255 (DDBJ%2C Best hit);ORF_evidence=Q2R0Q1 (UniProt);GO=Biological Process: mRNA processing (GO:0006397),Cellular Component: nucleus (GO:0005634),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723);InterPro=RNA recognition motif domain (IPR000504),U2 snRNP auxilliary factor%2C large subunit%2C splicing factor (IPR006529),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-024-H08;Expression=AK059255;TENOR=Os11t0636900-01;KEGG=Os11t0636900-01
Chr11	irgsp1_rep	five_prime_UTR	25153370	25153451	.	-	.	Parent=Os11t0636900-01
Chr11	irgsp1_rep	CDS	25153205	25153369	.	-	0	Parent=Os11t0636900-01
Chr11	irgsp1_rep	CDS	25152498	25152736	.	-	0	Parent=Os11t0636900-01
Chr11	irgsp1_rep	CDS	25152280	25152387	.	-	1	Parent=Os11t0636900-01
Chr11	irgsp1_rep	CDS	25151818	25151888	.	-	1	Parent=Os11t0636900-01
Chr11	irgsp1_rep	CDS	25150714	25150784	.	-	2	Parent=Os11t0636900-01
Chr11	irgsp1_rep	CDS	25150503	25150604	.	-	0	Parent=Os11t0636900-01
Chr11	irgsp1_rep	CDS	25149791	25150411	.	-	0	Parent=Os11t0636900-01
Chr11	irgsp1_rep	CDS	25149557	25149698	.	-	0	Parent=Os11t0636900-01
Chr11	irgsp1_rep	CDS	25149282	25149415	.	-	2	Parent=Os11t0636900-01
Chr11	irgsp1_rep	three_prime_UTR	25149166	25149281	.	-	.	Parent=Os11t0636900-01
Chr11	irgsp1_rep	three_prime_UTR	25148742	25149067	.	-	.	Parent=Os11t0636900-01
Chr11	irgsp1_rep	mRNA	25148722	25153451	.	-	.	ID=Os11t0636900-02;Name=Os11t0636900-02;Locus_id=Os11g0636900;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK073768 (DDBJ%2C Best hit);ORF_evidence=Q2R0Q1 (UniProt);GO=Biological Process: mRNA processing (GO:0006397),Cellular Component: nucleus (GO:0005634),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723);InterPro=RNA recognition motif domain (IPR000504),RNA recognition motif domain%2C eukaryote (IPR003954),U2 snRNP auxilliary factor%2C large subunit%2C splicing factor (IPR006529),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033068H24;Expression=AK073768;TENOR=Os11t0636900-02;KEGG=Os11t0636900-02
Chr11	irgsp1_rep	five_prime_UTR	25153370	25153451	.	-	.	Parent=Os11t0636900-02
Chr11	irgsp1_rep	CDS	25153205	25153369	.	-	0	Parent=Os11t0636900-02
Chr11	irgsp1_rep	CDS	25152498	25152736	.	-	0	Parent=Os11t0636900-02
Chr11	irgsp1_rep	CDS	25152280	25152387	.	-	1	Parent=Os11t0636900-02
Chr11	irgsp1_rep	CDS	25151818	25151888	.	-	1	Parent=Os11t0636900-02
Chr11	irgsp1_rep	CDS	25150714	25150784	.	-	2	Parent=Os11t0636900-02
Chr11	irgsp1_rep	CDS	25150503	25150604	.	-	0	Parent=Os11t0636900-02
Chr11	irgsp1_rep	CDS	25149791	25150411	.	-	0	Parent=Os11t0636900-02
Chr11	irgsp1_rep	CDS	25149557	25149698	.	-	0	Parent=Os11t0636900-02
Chr11	irgsp1_rep	CDS	25149166	25149233	.	-	2	Parent=Os11t0636900-02
Chr11	irgsp1_rep	CDS	25148930	25149067	.	-	0	Parent=Os11t0636900-02
Chr11	irgsp1_rep	three_prime_UTR	25148722	25148929	.	-	.	Parent=Os11t0636900-02
Chr11	irgsp1_rep	mRNA	25153799	25155522	.	-	.	ID=Os11t0637000-01;Name=Os11t0637000-01;Locus_id=Os11g0637000;Note=Similar to Sugar transporter family protein.;Transcript_evidence=AK119762 (DDBJ%2C Best hit);ORF_evidence=Q2R0P9 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857);InterPro=General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=002-171-G08;TENOR=Os11t0637000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	25155460	25155522	.	-	.	Parent=Os11t0637000-01
Chr11	irgsp1_rep	CDS	25155318	25155459	.	-	0	Parent=Os11t0637000-01
Chr11	irgsp1_rep	CDS	25154300	25155231	.	-	2	Parent=Os11t0637000-01
Chr11	irgsp1_rep	three_prime_UTR	25153799	25154299	.	-	.	Parent=Os11t0637000-01
Chr11	irgsp1_rep	mRNA	25153911	25155463	.	+	.	ID=Os11t0637050-00;Name=Os11t0637050-00;Locus_id=Os11g0637050;Note=Hypothetical protein.;Transcript_evidence=tplb0043f10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0637050-00
Chr11	irgsp1_rep	five_prime_UTR	25153911	25154052	.	+	.	Parent=Os11t0637050-00
Chr11	irgsp1_rep	CDS	25154053	25154478	.	+	0	Parent=Os11t0637050-00
Chr11	irgsp1_rep	three_prime_UTR	25154479	25155226	.	+	.	Parent=Os11t0637050-00
Chr11	irgsp1_rep	three_prime_UTR	25155311	25155463	.	+	.	Parent=Os11t0637050-00
Chr11	irgsp1_rep	mRNA	25160019	25161761	.	-	.	ID=Os11t0637100-00;Name=Os11t0637100-00;Locus_id=Os11g0637100;Note=Similar to Sugar transporter family protein.;Transcript_evidence=AK376038 (DDBJ);ORF_evidence=Q2R0P9 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);TENOR=Os11t0637100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	25161087	25161761	.	-	0	Parent=Os11t0637100-00
Chr11	irgsp1_rep	CDS	25160025	25160975	.	-	0	Parent=Os11t0637100-00
Chr11	irgsp1_rep	three_prime_UTR	25160019	25160024	.	-	.	Parent=Os11t0637100-00
Chr11	irgsp1_rep	mRNA	25162871	25164608	.	+	.	ID=Os11t0637166-01;Name=Os11t0637166-01;Locus_id=Os11g0637166;Note=Hypothetical gene.;Transcript_evidence=AK288732 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090063G12;TENOR=Os11t0637166-01;KEGG=Os11t0637166-01
Chr11	irgsp1_rep	five_prime_UTR	25162871	25163911	.	+	.	Parent=Os11t0637166-01
Chr11	irgsp1_rep	CDS	25163912	25164127	.	+	0	Parent=Os11t0637166-01
Chr11	irgsp1_rep	three_prime_UTR	25164128	25164608	.	+	.	Parent=Os11t0637166-01
Chr11	irgsp1_rep	mRNA	25165988	25167744	.	-	.	ID=Os11t0637200-01;Name=Os11t0637200-01;Locus_id=Os11g0637200;Note=Similar to Sorbitol transporter.;Transcript_evidence=AK106745 (DDBJ%2C Best hit);ORF_evidence=Q2R0P9 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=002-115-B11;Expression=AK106745;TENOR=Os11t0637200-01;KEGG=Os11t0637200-01
Chr11	irgsp1_rep	five_prime_UTR	25167702	25167744	.	-	.	Parent=Os11t0637200-01
Chr11	irgsp1_rep	CDS	25167569	25167701	.	-	0	Parent=Os11t0637200-01
Chr11	irgsp1_rep	CDS	25167149	25167495	.	-	2	Parent=Os11t0637200-01
Chr11	irgsp1_rep	CDS	25166124	25167074	.	-	0	Parent=Os11t0637200-01
Chr11	irgsp1_rep	three_prime_UTR	25165988	25166123	.	-	.	Parent=Os11t0637200-01
Chr11	irgsp1_rep	mRNA	25171719	25172081	.	+	.	ID=Os11t0637300-00;Name=Os11t0637300-00;Locus_id=Os11g0637300;Oryzabase Gene Symbol Synonym(s)=OsFbox629%2C Os_F0564;Oryzabase Gene Name Synonym(s)=F-box protein 629;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001068333.1 (RefSeq);InterPro=F-box domain%2C Skp2-like (IPR022364);Oryzabase=17390;TENOR=Os11t0637300-00;KEGG=Os11t0637300-00
Chr11	irgsp1_rep	CDS	25171719	25172081	.	+	0	Parent=Os11t0637300-00
Chr11	irgsp1_rep	mRNA	25177818	25180272	.	-	.	ID=Os11t0637501-00;Name=Os11t0637501-00;Locus_id=Os11g0637501;Note=Similar to membrane protein.;Transcript_evidence=CU861741 (DDBJ%2C Best hit);ORF_evidence=B6TJI4 (UniProt);InterPro=Endoplasmic reticulum%2C stress-associated Ramp4 (IPR010580);TENOR=Os11t0637501-00;KEGG=Os11t0637501-00
Chr11	irgsp1_rep	five_prime_UTR	25180182	25180272	.	-	.	Parent=Os11t0637501-00
Chr11	irgsp1_rep	CDS	25180179	25180181	.	-	0	Parent=Os11t0637501-00
Chr11	irgsp1_rep	CDS	25178618	25178774	.	-	0	Parent=Os11t0637501-00
Chr11	irgsp1_rep	CDS	25178010	25178056	.	-	2	Parent=Os11t0637501-00
Chr11	irgsp1_rep	three_prime_UTR	25177818	25178009	.	-	.	Parent=Os11t0637501-00
Chr11	irgsp1_rep	mRNA	25182326	25183324	.	-	.	ID=Os11t0637600-00;Name=Os11t0637600-00;Locus_id=Os11g0637600;Note=Similar to potyvirus VPg interacting protein.;Transcript_evidence=tplb0010f15 (Wheat FLcDNA);ORF_evidence=NP_001147896.1 (RefSeq);InterPro=Protein of unknown function DUF1423%2C plant (IPR004082);TENOR=Os11t0637600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	25183259	25183324	.	-	.	Parent=Os11t0637600-00
Chr11	irgsp1_rep	CDS	25182326	25183258	.	-	0	Parent=Os11t0637600-00
Chr11	irgsp1_rep	mRNA	25193013	25197268	.	+	.	ID=Os11t0637700-01;Name=Os11t0637700-01;Locus_id=Os11g0637700;RAP-DB Gene Symbol Synonym(s)=LGG%2C RBP-A;RAP-DB Gene Name Synonym(s)=LARGE GRAIN%2C RNA binding protein A;Oryzabase Gene Symbol Synonym(s)=RBPA%2C RBP-A;Oryzabase Gene Name Synonym(s)=RNA binding protein A;Note=RNA-binding protein%2C Heterogeneous nuclear ribonucleoprotein 1 (hnRNP1)%2C Regulation of spikelet hull length;Transcript_evidence=AK105751;ORF_evidence=Q2R0P4;GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723);InterPro=Nucleotide-binding alpha-beta plait domain superfamily (IPR012677),RNA-binding domain superfamily (IPR035979),RNA recognition motif domain (IPR000504),DAZ-associated protein 1%2C RNA recognition motif 2 (IPR034131);NIAS_FLcDNA=001-202-B11;Manual Curation=January 30%2C 2019;Literature_PMID=30690508,20217123;Oryzabase=20897;Expression=AK105751;TENOR=Os11t0637700-01;KEGG=Os11t0637700-01;Subcellular location=nucleus (GO:0005634)
Chr11	irgsp1_rep	five_prime_UTR	25193013	25193286	.	+	.	Parent=Os11t0637700-01
Chr11	irgsp1_rep	five_prime_UTR	25193461	25193483	.	+	.	Parent=Os11t0637700-01
Chr11	irgsp1_rep	CDS	25193484	25193705	.	+	0	Parent=Os11t0637700-01
Chr11	irgsp1_rep	CDS	25193888	25195069	.	+	0	Parent=Os11t0637700-01
Chr11	irgsp1_rep	three_prime_UTR	25195070	25195078	.	+	.	Parent=Os11t0637700-01
Chr11	irgsp1_rep	three_prime_UTR	25196666	25197268	.	+	.	Parent=Os11t0637700-01
Chr11	irgsp1_rep	mRNA	25193022	25197347	.	+	.	ID=Os11t0637700-02;Name=Os11t0637700-02;Locus_id=Os11g0637700;Oryzabase Gene Symbol Synonym(s)=RBPA%2C RBP-A;Oryzabase Gene Name Synonym(s)=RNA binding protein A;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK070544 (DDBJ%2C Best hit);ORF_evidence=A3CD54 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023056G11;Oryzabase=20897;Expression=AK070544;TENOR=Os11t0637700-02;KEGG=Os11t0637700-02
Chr11	irgsp1_rep	five_prime_UTR	25193022	25193189	.	+	.	Parent=Os11t0637700-02
Chr11	irgsp1_rep	five_prime_UTR	25193261	25193286	.	+	.	Parent=Os11t0637700-02
Chr11	irgsp1_rep	five_prime_UTR	25193461	25193483	.	+	.	Parent=Os11t0637700-02
Chr11	irgsp1_rep	CDS	25193484	25193705	.	+	0	Parent=Os11t0637700-02
Chr11	irgsp1_rep	CDS	25193888	25195069	.	+	0	Parent=Os11t0637700-02
Chr11	irgsp1_rep	three_prime_UTR	25195070	25195078	.	+	.	Parent=Os11t0637700-02
Chr11	irgsp1_rep	three_prime_UTR	25196666	25197347	.	+	.	Parent=Os11t0637700-02
Chr11	irgsp1_rep	mRNA	25193108	25194468	.	+	.	ID=Os11t0637700-03;Name=Os11t0637700-03;Locus_id=Os11g0637700;Oryzabase Gene Symbol Synonym(s)=RBPA%2C RBP-A;Oryzabase Gene Name Synonym(s)=RNA binding protein A;Note=Similar to predicted protein.;Transcript_evidence=AK071789 (DDBJ%2C Best hit);ORF_evidence=B6TAS3 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023110H14;Oryzabase=20897;TENOR=Os11t0637700-03
Chr11	irgsp1_rep	five_prime_UTR	25193108	25193286	.	+	.	Parent=Os11t0637700-03
Chr11	irgsp1_rep	five_prime_UTR	25193461	25193483	.	+	.	Parent=Os11t0637700-03
Chr11	irgsp1_rep	CDS	25193484	25193705	.	+	0	Parent=Os11t0637700-03
Chr11	irgsp1_rep	CDS	25193888	25194468	.	+	0	Parent=Os11t0637700-03
Chr11	irgsp1_rep	mRNA	25199882	25206038	.	-	.	ID=Os11t0637800-01;Name=Os11t0637800-01;Locus_id=Os11g0637800;Note=Similar to 1-acyl-sn-glycerol-3-phosphate acyltransferase PLS1.;Transcript_evidence=AK242785 (DDBJ%2C Best hit);ORF_evidence=NP_001105919.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Phospholipid/glycerol acyltransferase (IPR002123);NIAS_FLcDNA=J090056F15;TENOR=Os11t0637800-01;KEGG=Os11t0637800-01 (EC:2.3.1.51)
Chr11	irgsp1_rep	five_prime_UTR	25205754	25206038	.	-	.	Parent=Os11t0637800-01
Chr11	irgsp1_rep	CDS	25205673	25205753	.	-	0	Parent=Os11t0637800-01
Chr11	irgsp1_rep	CDS	25205145	25205267	.	-	0	Parent=Os11t0637800-01
Chr11	irgsp1_rep	CDS	25204378	25204417	.	-	0	Parent=Os11t0637800-01
Chr11	irgsp1_rep	CDS	25204211	25204284	.	-	2	Parent=Os11t0637800-01
Chr11	irgsp1_rep	CDS	25204028	25204087	.	-	0	Parent=Os11t0637800-01
Chr11	irgsp1_rep	CDS	25203110	25203187	.	-	0	Parent=Os11t0637800-01
Chr11	irgsp1_rep	CDS	25202869	25203027	.	-	0	Parent=Os11t0637800-01
Chr11	irgsp1_rep	CDS	25201507	25201632	.	-	0	Parent=Os11t0637800-01
Chr11	irgsp1_rep	CDS	25201235	25201327	.	-	0	Parent=Os11t0637800-01
Chr11	irgsp1_rep	CDS	25201036	25201119	.	-	0	Parent=Os11t0637800-01
Chr11	irgsp1_rep	CDS	25200166	25200372	.	-	0	Parent=Os11t0637800-01
Chr11	irgsp1_rep	three_prime_UTR	25199882	25200165	.	-	.	Parent=Os11t0637800-01
Chr11	irgsp1_rep	mRNA	25205090	25206092	.	+	.	ID=Os11t0637900-00;Name=Os11t0637900-00;Locus_id=Os11g0637900;Note=Hypothetical gene.;Transcript_evidence=EU941530 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0637900-00;KEGG=Os11t0637900-00
Chr11	irgsp1_rep	five_prime_UTR	25205090	25205676	.	+	.	Parent=Os11t0637900-00
Chr11	irgsp1_rep	CDS	25205677	25206063	.	+	0	Parent=Os11t0637900-00
Chr11	irgsp1_rep	three_prime_UTR	25206064	25206092	.	+	.	Parent=Os11t0637900-00
Chr11	irgsp1_rep	mRNA	25213451	25216758	.	+	.	ID=Os11t0638000-01;Name=Os11t0638000-01;Locus_id=Os11g0638000;Note=Similar to GTP-binding protein engA.;Transcript_evidence=AK069539 (DDBJ%2C Best hit);ORF_evidence=Q2R0P2 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=GTP-binding domain%2C HSR1-related (IPR002917),Small GTP-binding protein domain (IPR005225),GTP1/OBG (IPR006073),K homology domain-like%2C alpha/beta (IPR015946),GTP-binding%2C EngA (IPR016484);NIAS_FLcDNA=J023022I10;Expression=AK069539;TENOR=Os11t0638000-01;KEGG=Os11t0638000-01
Chr11	irgsp1_rep	five_prime_UTR	25213451	25213452	.	+	.	Parent=Os11t0638000-01
Chr11	irgsp1_rep	CDS	25213453	25213485	.	+	0	Parent=Os11t0638000-01
Chr11	irgsp1_rep	CDS	25213921	25214103	.	+	0	Parent=Os11t0638000-01
Chr11	irgsp1_rep	CDS	25214293	25214454	.	+	0	Parent=Os11t0638000-01
Chr11	irgsp1_rep	CDS	25214556	25214749	.	+	0	Parent=Os11t0638000-01
Chr11	irgsp1_rep	CDS	25215066	25215216	.	+	1	Parent=Os11t0638000-01
Chr11	irgsp1_rep	CDS	25215667	25215829	.	+	0	Parent=Os11t0638000-01
Chr11	irgsp1_rep	CDS	25216372	25216436	.	+	2	Parent=Os11t0638000-01
Chr11	irgsp1_rep	three_prime_UTR	25216437	25216758	.	+	.	Parent=Os11t0638000-01
Chr11	irgsp1_rep	mRNA	25216370	25216725	.	+	.	ID=Os11t0638000-02;Name=Os11t0638000-02;Locus_id=Os11g0638000;Note=Similar to Small GTP-binding protein domain containing protein%2C expressed.;Transcript_evidence=AK058866 (DDBJ%2C Best hit);ORF_evidence=Q2R0P2 (UniProt);NIAS_FLcDNA=001-006-A08;TENOR=Os11t0638000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	25216370	25216370	.	+	.	Parent=Os11t0638000-02
Chr11	irgsp1_rep	CDS	25216371	25216436	.	+	0	Parent=Os11t0638000-02
Chr11	irgsp1_rep	three_prime_UTR	25216437	25216725	.	+	.	Parent=Os11t0638000-02
Chr11	irgsp1_rep	mRNA	25218327	25222357	.	+	.	ID=Os11t0638200-00;Name=Os11t0638200-00;Locus_id=Os11g0638200;Note=Conserved hypothetical protein.;Transcript_evidence=AY224587 (DDBJ%2C Best hit);ORF_evidence=Q2R0P1 (UniProt);TENOR=Os11t0638200-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	25218327	25218338	.	+	.	Parent=Os11t0638200-00
Chr11	irgsp1_rep	CDS	25218339	25218540	.	+	0	Parent=Os11t0638200-00
Chr11	irgsp1_rep	CDS	25218758	25219416	.	+	2	Parent=Os11t0638200-00
Chr11	irgsp1_rep	CDS	25220670	25221012	.	+	0	Parent=Os11t0638200-00
Chr11	irgsp1_rep	CDS	25221939	25222357	.	+	2	Parent=Os11t0638200-00
Chr11	irgsp1_rep	mRNA	25237345	25239585	.	-	.	ID=Os11t0638700-00;Name=Os11t0638700-00;Locus_id=Os11g0638700;Note=Protein of unknown function DUF594 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001176673.1 (RefSeq);InterPro=Protein of unknown function DUF594 (IPR007658);TENOR=Os11t0638700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	25237345	25239585	.	-	0	Parent=Os11t0638700-00
Chr11	irgsp1_rep	mRNA	25238381	25239594	.	+	.	ID=Os11t0638802-00;Name=Os11t0638802-00;Locus_id=Os11g0638802;Note=Non-protein coding transcript.;Transcript_evidence=EU972810 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0638802-00
Chr11	irgsp1_rep	exon	25238381	25239594	.	+	.	Parent=Os11t0638802-00
Chr11	irgsp1_rep	mRNA	25245804	25247638	.	-	.	ID=Os11t0638900-01;Name=Os11t0638900-01;Locus_id=Os11g0638900;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=AK062181 (DDBJ%2C Best hit);ORF_evidence=Q2R0N3 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=001-046-D09;Expression=AK062181;TENOR=Os11t0638900-01;KEGG=Os11t0638900-01
Chr11	irgsp1_rep	CDS	25247599	25247638	.	-	0	Parent=Os11t0638900-01
Chr11	irgsp1_rep	CDS	25247363	25247523	.	-	2	Parent=Os11t0638900-01
Chr11	irgsp1_rep	CDS	25246919	25247200	.	-	0	Parent=Os11t0638900-01
Chr11	irgsp1_rep	CDS	25246341	25246400	.	-	0	Parent=Os11t0638900-01
Chr11	irgsp1_rep	three_prime_UTR	25245804	25246340	.	-	.	Parent=Os11t0638900-01
Chr11	irgsp1_rep	mRNA	25257923	25262271	.	+	.	ID=Os11t0639000-00;Name=Os11t0639000-00;Locus_id=Os11g0639000;Note=Similar to Phyb1.;Transcript_evidence=AK331594 (DDBJ);ORF_evidence=O81652 (UniProt);InterPro=Folate-sensitive fragile site protein Fra10Ac1 (IPR019129);TENOR=Os11t0639000-00;KEGG=Os11t0639000-00
Chr11	irgsp1_rep	five_prime_UTR	25257923	25257950	.	+	.	Parent=Os11t0639000-00
Chr11	irgsp1_rep	CDS	25257951	25258009	.	+	0	Parent=Os11t0639000-00
Chr11	irgsp1_rep	CDS	25258398	25258465	.	+	1	Parent=Os11t0639000-00
Chr11	irgsp1_rep	CDS	25259416	25259497	.	+	2	Parent=Os11t0639000-00
Chr11	irgsp1_rep	CDS	25259606	25259689	.	+	1	Parent=Os11t0639000-00
Chr11	irgsp1_rep	CDS	25260462	25260501	.	+	1	Parent=Os11t0639000-00
Chr11	irgsp1_rep	CDS	25261080	25261125	.	+	0	Parent=Os11t0639000-00
Chr11	irgsp1_rep	CDS	25261280	25261338	.	+	2	Parent=Os11t0639000-00
Chr11	irgsp1_rep	CDS	25261448	25261515	.	+	0	Parent=Os11t0639000-00
Chr11	irgsp1_rep	CDS	25261729	25261744	.	+	1	Parent=Os11t0639000-00
Chr11	irgsp1_rep	three_prime_UTR	25261745	25261831	.	+	.	Parent=Os11t0639000-00
Chr11	irgsp1_rep	three_prime_UTR	25261948	25262024	.	+	.	Parent=Os11t0639000-00
Chr11	irgsp1_rep	three_prime_UTR	25262190	25262271	.	+	.	Parent=Os11t0639000-00
Chr11	irgsp1_rep	mRNA	25263336	25264276	.	-	.	ID=Os11t0639100-01;Name=Os11t0639100-01;Locus_id=Os11g0639100;RAP-DB Gene Symbol Synonym(s)=Pi54%2C Pi-kh%2C Pi-k<sup>h</sup>;CGSNL Gene Symbol=PIKH;CGSNL Gene Name=PYRICULARIA ORYZAE RESISTANCE KH;Oryzabase Gene Symbol Synonym(s)=Pi-kh%2C Pi k-h%2C Pi54%2C Pi54rh%2C Pi-k(h)%2C Pik-h%2C Pikh;Oryzabase Gene Name Synonym(s)=Pyricularia oryzae resistance%2C Magnaporthe grisea resistance kh%2C Blast resistance kh;Note=NBS-LRR protein%2C Blast resistance%2C Broad-spectrum resistance against Magnaporthe oryzae (Nipponbare: susceptible);Transcript_evidence=EF532592 (Peiai64);ORF_evidence=A0A0P0Y4P4;InterPro=Leucine-rich repeat domain superfamily (IPR032675);Manual Curation=January 11%2C 2019;Literature_PMID=30519841,DOI:10.1007/s13562-010-0026-1;Oryzabase=6334;TENOR=Os11t0639100-00;KEGG=Os11t0639100-00
Chr11	irgsp1_rep	CDS	25263938	25264276	.	-	0	Parent=Os11t0639100-01
Chr11	irgsp1_rep	three_prime_UTR	25263336	25263937	.	-	.	Parent=Os11t0639100-01
Chr11	irgsp1_rep	mRNA	25276091	25278366	.	+	.	ID=Os11t0639300-01;Name=Os11t0639300-01;Locus_id=Os11g0639300;Note=Protein of unknown function DUF594 family protein.;Transcript_evidence=AK102044 (DDBJ%2C Best hit);ORF_evidence=A2ZGA3 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);NIAS_FLcDNA=J033081M11;Expression=AK102044;TENOR=Os11t0639300-01;KEGG=Os11t0639300-01
Chr11	irgsp1_rep	five_prime_UTR	25276091	25276113	.	+	.	Parent=Os11t0639300-01
Chr11	irgsp1_rep	CDS	25276114	25278294	.	+	0	Parent=Os11t0639300-01
Chr11	irgsp1_rep	three_prime_UTR	25278295	25278366	.	+	.	Parent=Os11t0639300-01
Chr11	irgsp1_rep	mRNA	25279810	25280531	.	-	.	ID=Os11t0639400-01;Name=Os11t0639400-01;Locus_id=Os11g0639400;Note=Hypothetical conserved gene.;Transcript_evidence=AK107778 (DDBJ%2C Best hit);ORF_evidence=B9G8G7 (UniProt);NIAS_FLcDNA=002-133-C03;Expression=AK107778;TENOR=Os11t0639400-01;KEGG=Os11t0639400-01
Chr11	irgsp1_rep	five_prime_UTR	25280531	25280531	.	-	.	Parent=Os11t0639400-01
Chr11	irgsp1_rep	CDS	25280207	25280530	.	-	0	Parent=Os11t0639400-01
Chr11	irgsp1_rep	three_prime_UTR	25279810	25280206	.	-	.	Parent=Os11t0639400-01
Chr11	irgsp1_rep	mRNA	25289129	25293951	.	-	.	ID=Os11t0639600-01;Name=Os11t0639600-01;Locus_id=Os11g0639600;Note=NB-ARC domain containing protein.;Transcript_evidence=AK100303 (DDBJ%2C Best hit);ORF_evidence=A2ZGA4 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J023078B22;Expression=AK100303;TENOR=Os11t0639600-01;KEGG=Os11t0639600-01
Chr11	irgsp1_rep	five_prime_UTR	25293475	25293951	.	-	.	Parent=Os11t0639600-01
Chr11	irgsp1_rep	five_prime_UTR	25292527	25292644	.	-	.	Parent=Os11t0639600-01
Chr11	irgsp1_rep	CDS	25289719	25292526	.	-	0	Parent=Os11t0639600-01
Chr11	irgsp1_rep	three_prime_UTR	25289653	25289718	.	-	.	Parent=Os11t0639600-01
Chr11	irgsp1_rep	three_prime_UTR	25289129	25289527	.	-	.	Parent=Os11t0639600-01
Chr11	irgsp1_rep	mRNA	25289291	25293844	.	-	.	ID=Os11t0639600-02;Name=Os11t0639600-02;Locus_id=Os11g0639600;Note=NB-ARC domain containing protein.;Transcript_evidence=AK066498 (DDBJ%2C Best hit);ORF_evidence=A2ZGA4 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013073O10;Expression=AK066498;TENOR=Os11t0639600-02;KEGG=Os11t0639600-02
Chr11	irgsp1_rep	five_prime_UTR	25293475	25293844	.	-	.	Parent=Os11t0639600-02
Chr11	irgsp1_rep	five_prime_UTR	25292527	25292644	.	-	.	Parent=Os11t0639600-02
Chr11	irgsp1_rep	CDS	25289719	25292526	.	-	0	Parent=Os11t0639600-02
Chr11	irgsp1_rep	three_prime_UTR	25289653	25289718	.	-	.	Parent=Os11t0639600-02
Chr11	irgsp1_rep	three_prime_UTR	25289291	25289527	.	-	.	Parent=Os11t0639600-02
Chr11	irgsp1_rep	mRNA	25304174	25304459	.	+	.	ID=Os11t0639850-00;Name=Os11t0639850-00;Locus_id=Os11g0639850;Note=Non-protein coding transcript.;Transcript_evidence=EU975382 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0639850-00
Chr11	irgsp1_rep	exon	25304174	25304459	.	+	.	Parent=Os11t0639850-00
Chr11	irgsp1_rep	mRNA	25316103	25318049	.	-	.	ID=Os11t0640000-00;Name=Os11t0640000-00;Locus_id=Os11g0640000;Note=NB-ARC domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001068346.2 (RefSeq);TENOR=Os11t0640000-00;KEGG=Os11t0640000-00
Chr11	irgsp1_rep	CDS	25316103	25318049	.	-	0	Parent=Os11t0640000-00
Chr11	irgsp1_rep	mRNA	25321323	25325479	.	+	.	ID=Os11t0640300-01;Name=Os11t0640300-01;Locus_id=Os11g0640300;Note=NB-ARC domain containing protein.;Transcript_evidence=AK121159 (DDBJ%2C Best hit);ORF_evidence=A2YI52 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: protein binding (GO:0005515),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),Leucine-rich repeat (IPR001611),NB-ARC (IPR002182);NIAS_FLcDNA=J023079N03;Expression=AK121159;TENOR=Os11t0640300-01;KEGG=Os11t0640300-01
Chr11	irgsp1_rep	five_prime_UTR	25321323	25321672	.	+	.	Parent=Os11t0640300-01
Chr11	irgsp1_rep	five_prime_UTR	25321780	25321842	.	+	.	Parent=Os11t0640300-01
Chr11	irgsp1_rep	CDS	25321843	25325199	.	+	0	Parent=Os11t0640300-01
Chr11	irgsp1_rep	three_prime_UTR	25325200	25325479	.	+	.	Parent=Os11t0640300-01
Chr11	irgsp1_rep	mRNA	25321648	25324801	.	+	.	ID=Os11t0640300-02;Name=Os11t0640300-02;Locus_id=Os11g0640300;Note=Hypothetical conserved gene.;Transcript_evidence=AK101623 (DDBJ%2C Best hit);ORF_evidence=A2YI52 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: protein binding (GO:0005515),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),Leucine-rich repeat (IPR001611),NB-ARC (IPR002182);NIAS_FLcDNA=J033052L15;TENOR=Os11t0640300-02
Chr11	irgsp1_rep	five_prime_UTR	25321648	25321842	.	+	.	Parent=Os11t0640300-02
Chr11	irgsp1_rep	CDS	25321843	25324801	.	+	0	Parent=Os11t0640300-02
Chr11	irgsp1_rep	mRNA	25333432	25335627	.	-	.	ID=Os11t0640500-00;Name=Os11t0640500-00;Locus_id=Os11g0640500;Note=Protein of unknown function DUF594 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R0M4 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);TENOR=Os11t0640500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	25333432	25335627	.	-	0	Parent=Os11t0640500-00
Chr11	irgsp1_rep	mRNA	25338884	25345347	.	-	.	ID=Os11t0640600-00;Name=Os11t0640600-00;Locus_id=Os11g0640600;Note=NB-ARC domain containing protein.;Transcript_evidence=AB017914 (DDBJ%2C Best hit);ORF_evidence=longestORF;GO=Biological Process: defense response (GO:0006952),Molecular Function: protein binding (GO:0005515),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),Leucine-rich repeat (IPR001611),NB-ARC (IPR002182);Expression=AB017914;TENOR=Os11t0640600-00;KEGG=Os11t0640600-00
Chr11	irgsp1_rep	five_prime_UTR	25345293	25345347	.	-	.	Parent=Os11t0640600-00
Chr11	irgsp1_rep	CDS	25342163	25345292	.	-	0	Parent=Os11t0640600-00
Chr11	irgsp1_rep	CDS	25338994	25339169	.	-	2	Parent=Os11t0640600-00
Chr11	irgsp1_rep	three_prime_UTR	25338884	25338993	.	-	.	Parent=Os11t0640600-00
Chr11	irgsp1_rep	mRNA	25358292	25362133	.	+	.	ID=Os11t0640800-01;Name=Os11t0640800-01;Locus_id=Os11g0640800;Note=Conserved hypothetical protein.;Transcript_evidence=AK288758 (DDBJ%2C Best hit);ORF_evidence=NP_001068350.1 (RefSeq);NIAS_FLcDNA=J090066K19;TENOR=Os11t0640800-01;KEGG=Os11t0640800-01
Chr11	irgsp1_rep	five_prime_UTR	25358292	25358356	.	+	.	Parent=Os11t0640800-01
Chr11	irgsp1_rep	CDS	25358357	25360219	.	+	0	Parent=Os11t0640800-01
Chr11	irgsp1_rep	three_prime_UTR	25360220	25362133	.	+	.	Parent=Os11t0640800-01
Chr11	irgsp1_rep	mRNA	25394050	25399410	.	+	.	ID=Os11t0641200-01;Name=Os11t0641200-01;Locus_id=Os11g0641200;Oryzabase Gene Symbol Synonym(s)=Os_F0723;Note=Hypothetical conserved gene.;Transcript_evidence=AK241553 (DDBJ%2C Best hit);ORF_evidence=Q2R0L6 (UniProt);InterPro=Leucine-rich repeat%2C cysteine-containing subtype (IPR006553),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J065177D10;Oryzabase=17546;TENOR=Os11t0641200-01;KEGG=Os11t0641200-01
Chr11	irgsp1_rep	five_prime_UTR	25394050	25394170	.	+	.	Parent=Os11t0641200-01
Chr11	irgsp1_rep	CDS	25394171	25394485	.	+	0	Parent=Os11t0641200-01
Chr11	irgsp1_rep	CDS	25395050	25395316	.	+	0	Parent=Os11t0641200-01
Chr11	irgsp1_rep	CDS	25395632	25396038	.	+	0	Parent=Os11t0641200-01
Chr11	irgsp1_rep	CDS	25396124	25396211	.	+	1	Parent=Os11t0641200-01
Chr11	irgsp1_rep	three_prime_UTR	25396212	25396268	.	+	.	Parent=Os11t0641200-01
Chr11	irgsp1_rep	three_prime_UTR	25396391	25396900	.	+	.	Parent=Os11t0641200-01
Chr11	irgsp1_rep	three_prime_UTR	25397263	25397455	.	+	.	Parent=Os11t0641200-01
Chr11	irgsp1_rep	three_prime_UTR	25397658	25397734	.	+	.	Parent=Os11t0641200-01
Chr11	irgsp1_rep	three_prime_UTR	25398113	25398263	.	+	.	Parent=Os11t0641200-01
Chr11	irgsp1_rep	three_prime_UTR	25398942	25399410	.	+	.	Parent=Os11t0641200-01
Chr11	irgsp1_rep	mRNA	25399957	25400721	.	+	.	ID=Os11t0641300-00;Name=Os11t0641300-00;Locus_id=Os11g0641300;Note=Conserved hypothetical protein.;Transcript_evidence=EU964963 (DDBJ);ORF_evidence=Q2R0L5 (UniProt);TENOR=Os11t0641300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	25399957	25399966	.	+	.	Parent=Os11t0641300-00
Chr11	irgsp1_rep	CDS	25399967	25400677	.	+	0	Parent=Os11t0641300-00
Chr11	irgsp1_rep	three_prime_UTR	25400678	25400721	.	+	.	Parent=Os11t0641300-00
Chr11	irgsp1_rep	mRNA	25423701	25426045	.	+	.	ID=Os11t0641500-01;Name=Os11t0641500-01;Locus_id=Os11g0641500;CGSNL Gene Symbol=LAC23;CGSNL Gene Name=LACCASE 23;Oryzabase Gene Symbol Synonym(s)=OsLAC23%2C OsLAC19%2C LAC19;Oryzabase Gene Name Synonym(s)=laccase 23;Note=Cupredoxin domain containing protein.;Transcript_evidence=AK103094 (DDBJ%2C Best hit);ORF_evidence=Q2R0L2 (UniProt);GO=Biological Process: lignin catabolic process (GO:0046274),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: apoplast (GO:0048046),Molecular Function: copper ion binding (GO:0005507),Molecular Function: laccase activity (GO:0008471),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Multicopper oxidase%2C type 1 (IPR001117),Multicopper oxidase%2C copper-binding site (IPR002355),Cupredoxin (IPR008972),Multicopper oxidase%2C type 2 (IPR011706),Multicopper oxidase%2C type 3 (IPR011707),Laccase (IPR017761);NIAS_FLcDNA=J033118K21;Oryzabase=21620;Expression=AK103094;TENOR=Os11t0641500-01;KEGG=Os11t0641500-01
Chr11	irgsp1_rep	five_prime_UTR	25423701	25423782	.	+	.	Parent=Os11t0641500-01
Chr11	irgsp1_rep	CDS	25423783	25424284	.	+	0	Parent=Os11t0641500-01
Chr11	irgsp1_rep	CDS	25424423	25425538	.	+	2	Parent=Os11t0641500-01
Chr11	irgsp1_rep	CDS	25425681	25425835	.	+	2	Parent=Os11t0641500-01
Chr11	irgsp1_rep	three_prime_UTR	25425836	25426045	.	+	.	Parent=Os11t0641500-01
Chr11	irgsp1_rep	mRNA	25432425	25434791	.	+	.	ID=Os11t0641800-01;Name=Os11t0641800-01;Locus_id=Os11g0641800;CGSNL Gene Symbol=LAC24;CGSNL Gene Name=LACCASE 24;Oryzabase Gene Symbol Synonym(s)=OsLAC24;Oryzabase Gene Name Synonym(s)=laccase 24;Note=Similar to Laccase-20.;Transcript_evidence=AK066963 (DDBJ%2C Best hit);ORF_evidence=Q2R0L0 (UniProt);GO=Biological Process: lignin catabolic process (GO:0046274),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: apoplast (GO:0048046),Molecular Function: copper ion binding (GO:0005507),Molecular Function: laccase activity (GO:0008471),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Multicopper oxidase%2C type 1 (IPR001117),Multicopper oxidase%2C copper-binding site (IPR002355),Cupredoxin (IPR008972),Multicopper oxidase%2C type 2 (IPR011706),Multicopper oxidase%2C type 3 (IPR011707),Laccase (IPR017761);NIAS_FLcDNA=J013093P21;Oryzabase=21621;TENOR=Os11t0641800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	25432425	25432494	.	+	.	Parent=Os11t0641800-01
Chr11	irgsp1_rep	CDS	25432495	25432981	.	+	0	Parent=Os11t0641800-01
Chr11	irgsp1_rep	CDS	25433115	25434230	.	+	2	Parent=Os11t0641800-01
Chr11	irgsp1_rep	CDS	25434371	25434510	.	+	2	Parent=Os11t0641800-01
Chr11	irgsp1_rep	three_prime_UTR	25434511	25434791	.	+	.	Parent=Os11t0641800-01
Chr11	irgsp1_rep	mRNA	25461246	25462998	.	-	.	ID=Os11t0642100-01;Name=Os11t0642100-01;Locus_id=Os11g0642100;Oryzabase Gene Symbol Synonym(s)=OsFbox632%2C Os_F0391;Oryzabase Gene Name Synonym(s)=F-box protein 632;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK107010 (DDBJ%2C Best hit);ORF_evidence=Q2R0K2 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-120-F02;Oryzabase=17393;Expression=AK107010;TENOR=Os11t0642100-01;KEGG=Os11t0642100-01
Chr11	irgsp1_rep	five_prime_UTR	25462965	25462998	.	-	.	Parent=Os11t0642100-01
Chr11	irgsp1_rep	CDS	25461762	25462964	.	-	0	Parent=Os11t0642100-01
Chr11	irgsp1_rep	three_prime_UTR	25461246	25461761	.	-	.	Parent=Os11t0642100-01
Chr11	irgsp1_rep	mRNA	25466557	25468131	.	-	.	ID=Os11t0642400-01;Name=Os11t0642400-01;Locus_id=Os11g0642400;CGSNL Gene Symbol=TBT1;CGSNL Gene Name=TRYPTAMINE BENZOYL TRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=Os-TBT1%2C OsTBT1;Oryzabase Gene Name Synonym(s)=tryptamine benzoyl transferase 1;Note=Transferase family protein.;Transcript_evidence=AK241399 (DDBJ%2C Best hit);ORF_evidence=NP_001176675.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J065158K06;Oryzabase=21364;TENOR=Os11t0642400-01;KEGG=Os11t0642400-01
Chr11	irgsp1_rep	five_prime_UTR	25468089	25468131	.	-	.	Parent=Os11t0642400-01
Chr11	irgsp1_rep	CDS	25466751	25468088	.	-	0	Parent=Os11t0642400-01
Chr11	irgsp1_rep	three_prime_UTR	25466557	25466750	.	-	.	Parent=Os11t0642400-01
Chr11	irgsp1_rep	mRNA	25492192	25496841	.	+	.	ID=Os11t0642800-01;Name=Os11t0642800-01;Locus_id=Os11g0642800;RAP-DB Gene Symbol Synonym(s)=OsGS1;RAP-DB Gene Name Synonym(s)=glutathione synthetase 1;CGSNL Gene Symbol=GS1;CGSNL Gene Name=GLUTATHIONE SYNTHETASE 1;Oryzabase Gene Symbol Synonym(s)=OsGS1;Oryzabase Gene Name Synonym(s)=glutathione synthetase 1;Note=Glutathione synthetase;Transcript_evidence=AK068792;ORF_evidence=Q0IRE6;GO=Biological Process: glutathione biosynthetic process (GO:0006750),Molecular Function: glutathione synthase activity (GO:0004363),Molecular Function: ATP binding (GO:0005524),Molecular Function: ligase activity (GO:0016874);InterPro=Glutathione synthase%2C N-terminal%2C eukaryotic (IPR014049),Glutathione synthase%2C alpha-helical (IPR014042),Glutathione synthase%2C substrate-binding domain superfamily (IPR037013),Pre-ATP-grasp domain superfamily (IPR016185),Glutathione synthase%2C C-terminal%2C eukaryotic (IPR014709),Glutathione synthase (IPR005615),Glutathione synthase%2C substrate-binding domain (IPR004887);NIAS_FLcDNA=J013163E23;Manual Curation=August 8%2C 2019;Literature_PMID=31245762;Oryzabase=22997;Expression=AK068792;TENOR=Os11t0642800-01;KEGG=Os11t0642800-01 (EC:6.3.2.3)
Chr11	irgsp1_rep	five_prime_UTR	25492192	25492260	.	+	.	Parent=Os11t0642800-01
Chr11	irgsp1_rep	CDS	25492261	25492563	.	+	0	Parent=Os11t0642800-01
Chr11	irgsp1_rep	CDS	25493387	25493556	.	+	0	Parent=Os11t0642800-01
Chr11	irgsp1_rep	CDS	25493828	25493903	.	+	1	Parent=Os11t0642800-01
Chr11	irgsp1_rep	CDS	25494043	25494173	.	+	0	Parent=Os11t0642800-01
Chr11	irgsp1_rep	CDS	25494257	25494379	.	+	1	Parent=Os11t0642800-01
Chr11	irgsp1_rep	CDS	25494476	25494555	.	+	1	Parent=Os11t0642800-01
Chr11	irgsp1_rep	CDS	25494835	25494916	.	+	2	Parent=Os11t0642800-01
Chr11	irgsp1_rep	CDS	25494996	25495065	.	+	1	Parent=Os11t0642800-01
Chr11	irgsp1_rep	CDS	25495292	25495413	.	+	0	Parent=Os11t0642800-01
Chr11	irgsp1_rep	CDS	25495639	25495778	.	+	1	Parent=Os11t0642800-01
Chr11	irgsp1_rep	CDS	25495862	25496054	.	+	2	Parent=Os11t0642800-01
Chr11	irgsp1_rep	CDS	25496158	25496284	.	+	1	Parent=Os11t0642800-01
Chr11	irgsp1_rep	CDS	25496376	25496381	.	+	0	Parent=Os11t0642800-01
Chr11	irgsp1_rep	three_prime_UTR	25496382	25496841	.	+	.	Parent=Os11t0642800-01
Chr11	irgsp1_rep	mRNA	25496956	25498124	.	-	.	ID=Os11t0642900-01;Name=Os11t0642900-01;Locus_id=Os11g0642900;Note=Hypothetical protein.;Transcript_evidence=AK108810 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-151-D10;Expression=AK108810;TENOR=Os11t0642900-01;KEGG=Os11t0642900-01
Chr11	irgsp1_rep	five_prime_UTR	25497792	25498124	.	-	.	Parent=Os11t0642900-01
Chr11	irgsp1_rep	CDS	25497390	25497791	.	-	0	Parent=Os11t0642900-01
Chr11	irgsp1_rep	three_prime_UTR	25496956	25497389	.	-	.	Parent=Os11t0642900-01
Chr11	irgsp1_rep	mRNA	25501586	25503169	.	+	.	ID=Os11t0643100-01;Name=Os11t0643100-01;Locus_id=Os11g0643100;CGSNL Gene Symbol=TBT2;CGSNL Gene Name=TRYPTAMINE BENZOYL TRANSFERASE 2;Oryzabase Gene Symbol Synonym(s)=Os-TBT2%2C OsTBT2;Oryzabase Gene Name Synonym(s)=tryptamine benzoyl transferase 2;Note=Transferase family protein.;Transcript_evidence=AK061327 (DDBJ%2C Best hit);ORF_evidence=B9G8H4 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=006-302-H12;Oryzabase=18256;Expression=AK061327;TENOR=Os11t0643100-01;KEGG=Os11t0643100-01
Chr11	irgsp1_rep	five_prime_UTR	25501586	25501624	.	+	.	Parent=Os11t0643100-01
Chr11	irgsp1_rep	CDS	25501625	25502971	.	+	0	Parent=Os11t0643100-01
Chr11	irgsp1_rep	three_prime_UTR	25502972	25503169	.	+	.	Parent=Os11t0643100-01
Chr11	irgsp1_rep	mRNA	25509587	25515285	.	+	.	ID=Os11t0643400-00;Name=Os11t0643400-00;Locus_id=Os11g0643400;CGSNL Gene Symbol=SCP64;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 64;Oryzabase Gene Symbol Synonym(s)=OsSCP64;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 64;Note=Similar to Serine carboxypeptidase family protein.;Transcript_evidence=BT068717 (DDBJ);ORF_evidence=Q2R0J2 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);Oryzabase=19237;TENOR=Os11t0643400-00;KEGG=Os11t0643400-00 (EC:3.4.16.5)
Chr11	irgsp1_rep	CDS	25509587	25510179	.	+	0	Parent=Os11t0643400-00
Chr11	irgsp1_rep	CDS	25510690	25510822	.	+	1	Parent=Os11t0643400-00
Chr11	irgsp1_rep	CDS	25513453	25513554	.	+	0	Parent=Os11t0643400-00
Chr11	irgsp1_rep	CDS	25513645	25513726	.	+	0	Parent=Os11t0643400-00
Chr11	irgsp1_rep	CDS	25513940	25514106	.	+	2	Parent=Os11t0643400-00
Chr11	irgsp1_rep	CDS	25514235	25514306	.	+	0	Parent=Os11t0643400-00
Chr11	irgsp1_rep	CDS	25514445	25514677	.	+	0	Parent=Os11t0643400-00
Chr11	irgsp1_rep	CDS	25514790	25514835	.	+	1	Parent=Os11t0643400-00
Chr11	irgsp1_rep	CDS	25515202	25515285	.	+	0	Parent=Os11t0643400-00
Chr11	irgsp1_rep	mRNA	25522647	25523204	.	-	.	ID=Os11t0643600-00;Name=Os11t0643600-00;Locus_id=Os11g0643600;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R0J0 (UniProt);InterPro=Protein of unknown function DUF3049 (IPR021410);TENOR=Os11t0643600-00;KEGG=Os11t0643600-00
Chr11	irgsp1_rep	CDS	25522647	25523204	.	-	0	Parent=Os11t0643600-00
Chr11	irgsp1_rep	mRNA	25533715	25536881	.	+	.	ID=Os11t0643700-01;Name=Os11t0643700-01;Locus_id=Os11g0643700;Note=Similar to predicted protein.;Transcript_evidence=AK242977 (DDBJ%2C Best hit);ORF_evidence=Q2R0I9 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: nuclear pore (GO:0005643);InterPro=Nuclear pore protein 84/107 (IPR007252);NIAS_FLcDNA=J090093A18;TENOR=Os11t0643700-01;KEGG=Os11t0643700-01
Chr11	irgsp1_rep	five_prime_UTR	25533715	25533716	.	+	.	Parent=Os11t0643700-01
Chr11	irgsp1_rep	CDS	25533717	25533835	.	+	0	Parent=Os11t0643700-01
Chr11	irgsp1_rep	CDS	25534281	25534379	.	+	1	Parent=Os11t0643700-01
Chr11	irgsp1_rep	CDS	25534487	25534678	.	+	1	Parent=Os11t0643700-01
Chr11	irgsp1_rep	CDS	25534840	25535011	.	+	1	Parent=Os11t0643700-01
Chr11	irgsp1_rep	CDS	25535129	25535285	.	+	0	Parent=Os11t0643700-01
Chr11	irgsp1_rep	CDS	25535417	25535619	.	+	2	Parent=Os11t0643700-01
Chr11	irgsp1_rep	CDS	25535818	25535959	.	+	0	Parent=Os11t0643700-01
Chr11	irgsp1_rep	CDS	25536037	25536197	.	+	2	Parent=Os11t0643700-01
Chr11	irgsp1_rep	CDS	25536298	25536414	.	+	0	Parent=Os11t0643700-01
Chr11	irgsp1_rep	CDS	25536501	25536587	.	+	0	Parent=Os11t0643700-01
Chr11	irgsp1_rep	three_prime_UTR	25536588	25536881	.	+	.	Parent=Os11t0643700-01
Chr11	irgsp1_rep	mRNA	25537073	25540452	.	-	.	ID=Os11t0643800-01;Name=Os11t0643800-01;Locus_id=Os11g0643800;Note=Similar to Sugar transporter family protein%2C expressed.;Transcript_evidence=AK241728 (DDBJ%2C Best hit);ORF_evidence=Q2R0I8 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J065199H08;TENOR=Os11t0643800-01;KEGG=Os11t0643800-01
Chr11	irgsp1_rep	five_prime_UTR	25540384	25540452	.	-	.	Parent=Os11t0643800-01
Chr11	irgsp1_rep	CDS	25540261	25540383	.	-	0	Parent=Os11t0643800-01
Chr11	irgsp1_rep	CDS	25540072	25540134	.	-	0	Parent=Os11t0643800-01
Chr11	irgsp1_rep	CDS	25539827	25539916	.	-	0	Parent=Os11t0643800-01
Chr11	irgsp1_rep	CDS	25539668	25539727	.	-	0	Parent=Os11t0643800-01
Chr11	irgsp1_rep	CDS	25539526	25539591	.	-	0	Parent=Os11t0643800-01
Chr11	irgsp1_rep	CDS	25539357	25539422	.	-	0	Parent=Os11t0643800-01
Chr11	irgsp1_rep	CDS	25539175	25539250	.	-	0	Parent=Os11t0643800-01
Chr11	irgsp1_rep	CDS	25539019	25539083	.	-	2	Parent=Os11t0643800-01
Chr11	irgsp1_rep	CDS	25538849	25538941	.	-	0	Parent=Os11t0643800-01
Chr11	irgsp1_rep	CDS	25538597	25538762	.	-	0	Parent=Os11t0643800-01
Chr11	irgsp1_rep	CDS	25538465	25538511	.	-	2	Parent=Os11t0643800-01
Chr11	irgsp1_rep	CDS	25538319	25538381	.	-	0	Parent=Os11t0643800-01
Chr11	irgsp1_rep	CDS	25538167	25538226	.	-	0	Parent=Os11t0643800-01
Chr11	irgsp1_rep	CDS	25537994	25538047	.	-	0	Parent=Os11t0643800-01
Chr11	irgsp1_rep	CDS	25537847	25537906	.	-	0	Parent=Os11t0643800-01
Chr11	irgsp1_rep	CDS	25537624	25537738	.	-	0	Parent=Os11t0643800-01
Chr11	irgsp1_rep	CDS	25537343	25537464	.	-	2	Parent=Os11t0643800-01
Chr11	irgsp1_rep	three_prime_UTR	25537073	25537342	.	-	.	Parent=Os11t0643800-01
Chr11	irgsp1_rep	mRNA	25542846	25546129	.	+	.	ID=Os11t0644000-00;Name=Os11t0644000-00;Locus_id=Os11g0644000;CGSNL Gene Symbol=RLCK342;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 342;Oryzabase Gene Symbol Synonym(s)=OsRLCK342%2C OsSTA269;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 342;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=AK376779 (DDBJ);ORF_evidence=Q2R0I7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=19012;TENOR=Os11t0644000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	25542846	25543323	.	+	0	Parent=Os11t0644000-00
Chr11	irgsp1_rep	CDS	25543422	25543837	.	+	2	Parent=Os11t0644000-00
Chr11	irgsp1_rep	CDS	25544494	25544573	.	+	0	Parent=Os11t0644000-00
Chr11	irgsp1_rep	CDS	25545446	25545581	.	+	1	Parent=Os11t0644000-00
Chr11	irgsp1_rep	CDS	25545860	25546129	.	+	0	Parent=Os11t0644000-00
Chr11	irgsp1_rep	mRNA	25552080	25553309	.	+	.	ID=Os11t0644100-00;Name=Os11t0644100-00;Locus_id=Os11g0644100;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=AK331851 (DDBJ);ORF_evidence=NP_001068361.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);TENOR=Os11t0644100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	25552080	25552105	.	+	.	Parent=Os11t0644100-00
Chr11	irgsp1_rep	CDS	25552106	25553305	.	+	0	Parent=Os11t0644100-00
Chr11	irgsp1_rep	three_prime_UTR	25553306	25553309	.	+	.	Parent=Os11t0644100-00
Chr11	irgsp1_rep	mRNA	25583803	25585451	.	-	.	ID=Os11t0644500-01;Name=Os11t0644500-01;Locus_id=Os11g0644500;Oryzabase Gene Name Synonym(s)=Transferase;Note=Similar to Transferase family protein%2C expressed.;Transcript_evidence=AK241673 (DDBJ%2C Best hit);ORF_evidence=Q2R0I3 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J065192H11;Oryzabase=18257;TENOR=Os11t0644500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	25585371	25585451	.	-	.	Parent=Os11t0644500-01
Chr11	irgsp1_rep	CDS	25584822	25585370	.	-	0	Parent=Os11t0644500-01
Chr11	irgsp1_rep	three_prime_UTR	25583803	25584821	.	-	.	Parent=Os11t0644500-01
Chr11	irgsp1_rep	mRNA	25589890	25591645	.	+	.	ID=Os11t0644600-00;Name=Os11t0644600-00;Locus_id=Os11g0644600;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0008h18 (Wheat FLcDNA);ORF_evidence=Q2R0I2 (UniProt);TENOR=Os11t0644600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	25589890	25591500	.	+	0	Parent=Os11t0644600-00
Chr11	irgsp1_rep	three_prime_UTR	25591501	25591645	.	+	.	Parent=Os11t0644600-00
Chr11	irgsp1_rep	mRNA	25593755	25594593	.	-	.	ID=Os11t0644650-01;Name=Os11t0644650-01;Locus_id=Os11g0644650;Note=Hypothetical protein.;Transcript_evidence=AK119964 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-184-D07;TENOR=Os11t0644650-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	25594593	25594593	.	-	.	Parent=Os11t0644650-01
Chr11	irgsp1_rep	CDS	25594125	25594592	.	-	0	Parent=Os11t0644650-01
Chr11	irgsp1_rep	three_prime_UTR	25593755	25594124	.	-	.	Parent=Os11t0644650-01
Chr11	irgsp1_rep	mRNA	25594109	25594874	.	+	.	ID=Os11t0644700-01;Name=Os11t0644700-01;Locus_id=Os11g0644700;Oryzabase Gene Name Synonym(s)=dirigent;Note=Plant disease resistance response protein family protein.;Transcript_evidence=AK062734 (DDBJ%2C Best hit);ORF_evidence=NP_001148724.1 (RefSeq);InterPro=Plant disease resistance response protein (IPR004265);NIAS_FLcDNA=001-106-E08;Oryzabase=22314;Expression=AK062734;TENOR=Os11t0644700-01;KEGG=Os11t0644700-01
Chr11	irgsp1_rep	five_prime_UTR	25594109	25594139	.	+	.	Parent=Os11t0644700-01
Chr11	irgsp1_rep	CDS	25594140	25594622	.	+	0	Parent=Os11t0644700-01
Chr11	irgsp1_rep	three_prime_UTR	25594623	25594874	.	+	.	Parent=Os11t0644700-01
Chr11	irgsp1_rep	mRNA	25596663	25608463	.	-	.	ID=Os11t0644800-00;Name=Os11t0644800-00;Locus_id=Os11g0644800;Note=Similar to Tyrosine/nicotianamine aminotransferases family protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R0I0 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: biosynthetic process (GO:0009058),Biological Process: 1-aminocyclopropane-1-carboxylate biosynthetic process (GO:0042218),Molecular Function: catalytic activity (GO:0003824),Molecular Function: transaminase activity (GO:0008483),Molecular Function: transferase activity%2C transferring nitrogenous groups (GO:0016769),Molecular Function: 1-aminocyclopropane-1-carboxylate synthase activity (GO:0016847),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=1-aminocyclopropane-1-carboxylate synthase (IPR001176),Aminotransferase%2C class I/classII (IPR004839),Tyrosine/nicotianamine aminotransferase (IPR005958),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424),Tyrosine transaminase (IPR021178);TENOR=Os11t0644800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	25608398	25608463	.	-	0	Parent=Os11t0644800-00
Chr11	irgsp1_rep	CDS	25601842	25602176	.	-	0	Parent=Os11t0644800-00
Chr11	irgsp1_rep	CDS	25598436	25598778	.	-	1	Parent=Os11t0644800-00
Chr11	irgsp1_rep	CDS	25597643	25597855	.	-	0	Parent=Os11t0644800-00
Chr11	irgsp1_rep	CDS	25597495	25597554	.	-	0	Parent=Os11t0644800-00
Chr11	irgsp1_rep	CDS	25597248	25597403	.	-	0	Parent=Os11t0644800-00
Chr11	irgsp1_rep	CDS	25597071	25597164	.	-	0	Parent=Os11t0644800-00
Chr11	irgsp1_rep	CDS	25596663	25596802	.	-	2	Parent=Os11t0644800-00
Chr11	irgsp1_rep	mRNA	25608333	25608933	.	+	.	ID=Os11t0644900-01;Name=Os11t0644900-01;Locus_id=Os11g0644900;Note=Hypothetical conserved gene.;Transcript_evidence=AK242623 (DDBJ%2C Best hit);ORF_evidence=B8B2M6 (UniProt);NIAS_FLcDNA=J090019N13;TENOR=Os11t0644900-01;KEGG=Os11t0644900-01
Chr11	irgsp1_rep	five_prime_UTR	25608333	25608407	.	+	.	Parent=Os11t0644900-01
Chr11	irgsp1_rep	CDS	25608408	25608486	.	+	0	Parent=Os11t0644900-01
Chr11	irgsp1_rep	CDS	25608663	25608796	.	+	2	Parent=Os11t0644900-01
Chr11	irgsp1_rep	three_prime_UTR	25608797	25608933	.	+	.	Parent=Os11t0644900-01
Chr11	irgsp1_rep	mRNA	25614690	25617362	.	+	.	ID=Os11t0645200-01;Name=Os11t0645200-01;Locus_id=Os11g0645200;Note=Similar to Oxidoreductase%2C aldo/keto reductase family protein%2C expressed.;Transcript_evidence=AK241876 (DDBJ%2C Best hit);ORF_evidence=Q2R0H4 (UniProt);InterPro=Aldo/keto reductase (IPR001395),NADP-dependent oxidoreductase domain (IPR023210);NIAS_FLcDNA=J065218G08;TENOR=Os11t0645200-01;KEGG=Os11t0645200-01
Chr11	irgsp1_rep	five_prime_UTR	25614690	25614742	.	+	.	Parent=Os11t0645200-01
Chr11	irgsp1_rep	CDS	25614743	25614800	.	+	0	Parent=Os11t0645200-01
Chr11	irgsp1_rep	CDS	25614879	25614978	.	+	2	Parent=Os11t0645200-01
Chr11	irgsp1_rep	CDS	25615093	25615201	.	+	1	Parent=Os11t0645200-01
Chr11	irgsp1_rep	CDS	25615317	25615405	.	+	0	Parent=Os11t0645200-01
Chr11	irgsp1_rep	CDS	25615892	25616000	.	+	1	Parent=Os11t0645200-01
Chr11	irgsp1_rep	CDS	25616083	25616184	.	+	0	Parent=Os11t0645200-01
Chr11	irgsp1_rep	CDS	25616277	25616341	.	+	0	Parent=Os11t0645200-01
Chr11	irgsp1_rep	CDS	25616543	25616649	.	+	1	Parent=Os11t0645200-01
Chr11	irgsp1_rep	CDS	25616736	25616800	.	+	2	Parent=Os11t0645200-01
Chr11	irgsp1_rep	CDS	25616876	25616930	.	+	0	Parent=Os11t0645200-01
Chr11	irgsp1_rep	CDS	25617018	25617178	.	+	2	Parent=Os11t0645200-01
Chr11	irgsp1_rep	three_prime_UTR	25617179	25617362	.	+	.	Parent=Os11t0645200-01
Chr11	irgsp1_rep	mRNA	25614757	25615008	.	-	.	ID=Os11t0645301-00;Name=Os11t0645301-00;Locus_id=Os11g0645301;Note=Hypothetical gene.;Transcript_evidence=EU948701 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0645301-00
Chr11	irgsp1_rep	five_prime_UTR	25615007	25615008	.	-	.	Parent=Os11t0645301-00
Chr11	irgsp1_rep	CDS	25614757	25615006	.	-	0	Parent=Os11t0645301-00
Chr11	irgsp1_rep	mRNA	25617774	25618559	.	+	.	ID=Os11t0645400-01;Name=Os11t0645400-01;Locus_id=Os11g0645400;Note=Plant disease resistance response protein family protein.;Transcript_evidence=AK062126 (DDBJ%2C Best hit),AK120284 (DDBJ%2C Best hit);ORF_evidence=NP_001148724.1 (RefSeq);InterPro=Plant disease resistance response protein (IPR004265);NIAS_FLcDNA=001-045-D09,J013049N05;Expression=AK062126;TENOR=Os11t0645400-01;KEGG=Os11t0645400-01
Chr11	irgsp1_rep	five_prime_UTR	25617774	25617800	.	+	.	Parent=Os11t0645400-01
Chr11	irgsp1_rep	CDS	25617801	25618313	.	+	0	Parent=Os11t0645400-01
Chr11	irgsp1_rep	three_prime_UTR	25618314	25618559	.	+	.	Parent=Os11t0645400-01
Chr11	irgsp1_rep	mRNA	25621222	25623934	.	-	.	ID=Os11t0645600-01;Name=Os11t0645600-01;Locus_id=Os11g0645600;Note=Hypothetical conserved gene.;Transcript_evidence=AK062865 (DDBJ%2C Best hit),AK101982 (DDBJ%2C Best hit);ORF_evidence=B9G8I2 (UniProt);NIAS_FLcDNA=001-108-B08,J033078B17;Expression=AK062865;TENOR=Os11t0645600-01;KEGG=Os11t0645600-01
Chr11	irgsp1_rep	five_prime_UTR	25623768	25623934	.	-	.	Parent=Os11t0645600-01
Chr11	irgsp1_rep	CDS	25623698	25623767	.	-	0	Parent=Os11t0645600-01
Chr11	irgsp1_rep	CDS	25621374	25621537	.	-	2	Parent=Os11t0645600-01
Chr11	irgsp1_rep	three_prime_UTR	25621222	25621373	.	-	.	Parent=Os11t0645600-01
Chr11	irgsp1_rep	mRNA	25627185	25631192	.	+	.	ID=Os11t0645800-00;Name=Os11t0645800-00;Locus_id=Os11g0645800;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R0H0 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os11t0645800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	25627185	25631192	.	+	0	Parent=Os11t0645800-00
Chr11	irgsp1_rep	mRNA	25635165	25637763	.	+	.	ID=Os11t0645886-00;Name=Os11t0645886-00;Locus_id=Os11g0645886;Note=NB-ARC domain containing protein.;Transcript_evidence=tplb0004n13 (Wheat FLcDNA);ORF_evidence=Q2R0F6 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os11t0645886-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	25635165	25636145	.	+	0	Parent=Os11t0645886-00
Chr11	irgsp1_rep	three_prime_UTR	25636146	25637353	.	+	.	Parent=Os11t0645886-00
Chr11	irgsp1_rep	three_prime_UTR	25637450	25637763	.	+	.	Parent=Os11t0645886-00
Chr11	irgsp1_rep	mRNA	25635571	25637635	.	-	.	ID=Os11t0645972-00;Name=Os11t0645972-00;Locus_id=Os11g0645972;Note=Non-protein coding transcript.;Transcript_evidence=BT085076 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0645972-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	exon	25637434	25637635	.	-	.	Parent=Os11t0645972-00
Chr11	irgsp1_rep	exon	25637179	25637338	.	-	.	Parent=Os11t0645972-00
Chr11	irgsp1_rep	exon	25635571	25636981	.	-	.	Parent=Os11t0645972-00
Chr11	irgsp1_rep	mRNA	25695249	25699181	.	+	.	ID=Os11t0646300-00;Name=Os11t0646300-00;Locus_id=Os11g0646300;Note=NB-ARC domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FNG0 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os11t0646300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	25695249	25699181	.	+	0	Parent=Os11t0646300-00
Chr11	irgsp1_rep	mRNA	25697412	25699904	.	-	.	ID=Os11t0646450-00;Name=Os11t0646450-00;Locus_id=Os11g0646450;Note=Hypothetical protein.;Transcript_evidence=BT085076 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0646450-00
Chr11	irgsp1_rep	five_prime_UTR	25699497	25699904	.	-	.	Parent=Os11t0646450-00
Chr11	irgsp1_rep	five_prime_UTR	25698266	25698444	.	-	.	Parent=Os11t0646450-00
Chr11	irgsp1_rep	CDS	25697918	25698265	.	-	0	Parent=Os11t0646450-00
Chr11	irgsp1_rep	CDS	25697447	25697689	.	-	0	Parent=Os11t0646450-00
Chr11	irgsp1_rep	three_prime_UTR	25697412	25697446	.	-	.	Parent=Os11t0646450-00
Chr11	irgsp1_rep	mRNA	25726524	25736838	.	-	.	ID=Os11t0646801-00;Name=Os11t0646801-00;Locus_id=Os11g0646801;Note=Non-protein coding transcript.;Transcript_evidence=BT085076 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0646801-00
Chr11	irgsp1_rep	exon	25736486	25736838	.	-	.	Parent=Os11t0646801-00
Chr11	irgsp1_rep	exon	25735681	25736259	.	-	.	Parent=Os11t0646801-00
Chr11	irgsp1_rep	exon	25734769	25735489	.	-	.	Parent=Os11t0646801-00
Chr11	irgsp1_rep	exon	25726524	25726762	.	-	.	Parent=Os11t0646801-00
Chr11	irgsp1_rep	mRNA	25760411	25763215	.	+	.	ID=Os11t0647866-00;Name=Os11t0647866-00;Locus_id=Os11g0647866;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R0F1 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os11t0647866-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	25760411	25763215	.	+	0	Parent=Os11t0647866-00
Chr11	irgsp1_rep	mRNA	25768487	25772558	.	-	.	ID=Os11t0648000-01;Name=Os11t0648000-01;Locus_id=Os11g0648000;RAP-DB Gene Symbol Synonym(s)=OsNHX2;RAP-DB Gene Name Synonym(s)=Na<sup>+</sup>/H<sup>+</sup> antiporter 2;CGSNL Gene Symbol=NHX2;CGSNL Gene Name=NA+/H+ ANTIPORTER 2;Oryzabase Gene Symbol Synonym(s)=OsNHX2;Oryzabase Gene Name Synonym(s)=Na+/H+ antiporter 2%2C NHX-type antiporter 2;Note=Na<sup>+</sup>/H<sup>+</sup> antiporter%2C Salt stress response;Transcript_evidence=AK066444,AB531435;ORF_evidence=Q2R0E9;GO=Biological Process: cation transport (GO:0006812),Biological Process: sodium ion transport (GO:0006814),Biological Process: regulation of pH (GO:0006885),Biological Process: transmembrane transport (GO:0055085),Molecular Function: solute:proton antiporter activity (GO:0015299),Molecular Function: sodium:proton antiporter activity (GO:0015385),Cellular Component: integral component of membrane (GO:0016021);InterPro=Sodium/solute  symporter  superfamily (IPR038770),Na+/H+ exchanger (IPR004709),Cation/H+ exchanger (IPR006153);NIAS_FLcDNA=J013066C13;Manual Curation=July 9%2C 2019;Literature_PMID=20963607;Oryzabase=11249;TENOR=Os11t0648000-01
Chr11	irgsp1_rep	five_prime_UTR	25772154	25772558	.	-	.	Parent=Os11t0648000-01
Chr11	irgsp1_rep	CDS	25771986	25772153	.	-	0	Parent=Os11t0648000-01
Chr11	irgsp1_rep	CDS	25771749	25771867	.	-	0	Parent=Os11t0648000-01
Chr11	irgsp1_rep	CDS	25771148	25771245	.	-	1	Parent=Os11t0648000-01
Chr11	irgsp1_rep	CDS	25771010	25771069	.	-	2	Parent=Os11t0648000-01
Chr11	irgsp1_rep	CDS	25770676	25770917	.	-	2	Parent=Os11t0648000-01
Chr11	irgsp1_rep	CDS	25770554	25770600	.	-	0	Parent=Os11t0648000-01
Chr11	irgsp1_rep	CDS	25770387	25770453	.	-	1	Parent=Os11t0648000-01
Chr11	irgsp1_rep	CDS	25770176	25770276	.	-	0	Parent=Os11t0648000-01
Chr11	irgsp1_rep	CDS	25769938	25770045	.	-	1	Parent=Os11t0648000-01
Chr11	irgsp1_rep	CDS	25769696	25769834	.	-	1	Parent=Os11t0648000-01
Chr11	irgsp1_rep	CDS	25769547	25769609	.	-	0	Parent=Os11t0648000-01
Chr11	irgsp1_rep	CDS	25769248	25769331	.	-	0	Parent=Os11t0648000-01
Chr11	irgsp1_rep	CDS	25768773	25769114	.	-	0	Parent=Os11t0648000-01
Chr11	irgsp1_rep	three_prime_UTR	25768487	25768772	.	-	.	Parent=Os11t0648000-01
Chr11	irgsp1_rep	mRNA	25768491	25772120	.	-	.	ID=Os11t0648000-02;Name=Os11t0648000-02;Locus_id=Os11g0648000;CGSNL Gene Symbol=NHX2;CGSNL Gene Name=NA+/H+ ANTIPORTER 2;Oryzabase Gene Symbol Synonym(s)=OsNHX2;Oryzabase Gene Name Synonym(s)=Na+/H+ antiporter 2%2C NHX-type antiporter 2;Note=Similar to Sodium/hydrogen exchanger.;Transcript_evidence=AK072026 (DDBJ%2C Best hit);ORF_evidence=Q2R0E9 (UniProt);GO=Biological Process: cation transport (GO:0006812),Biological Process: sodium ion transport (GO:0006814),Biological Process: regulation of pH (GO:0006885),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: solute:hydrogen antiporter activity (GO:0015299),Molecular Function: sodium:hydrogen antiporter activity (GO:0015385);InterPro=Na+/H+ exchanger (IPR004709),Cation/H+ exchanger (IPR006153),Cation/H+ exchanger%2C CPA1 family (IPR018422);NIAS_FLcDNA=J013105A12;Oryzabase=11249;TENOR=Os11t0648000-02
Chr11	irgsp1_rep	CDS	25771986	25772120	.	-	0	Parent=Os11t0648000-02
Chr11	irgsp1_rep	CDS	25771749	25771867	.	-	0	Parent=Os11t0648000-02
Chr11	irgsp1_rep	CDS	25771148	25771245	.	-	1	Parent=Os11t0648000-02
Chr11	irgsp1_rep	CDS	25771010	25771069	.	-	2	Parent=Os11t0648000-02
Chr11	irgsp1_rep	CDS	25770676	25770917	.	-	2	Parent=Os11t0648000-02
Chr11	irgsp1_rep	CDS	25770554	25770600	.	-	0	Parent=Os11t0648000-02
Chr11	irgsp1_rep	CDS	25770387	25770453	.	-	1	Parent=Os11t0648000-02
Chr11	irgsp1_rep	CDS	25770176	25770276	.	-	0	Parent=Os11t0648000-02
Chr11	irgsp1_rep	CDS	25769938	25770045	.	-	1	Parent=Os11t0648000-02
Chr11	irgsp1_rep	CDS	25769696	25769834	.	-	1	Parent=Os11t0648000-02
Chr11	irgsp1_rep	CDS	25769547	25769609	.	-	0	Parent=Os11t0648000-02
Chr11	irgsp1_rep	CDS	25769248	25769331	.	-	0	Parent=Os11t0648000-02
Chr11	irgsp1_rep	CDS	25768773	25769114	.	-	0	Parent=Os11t0648000-02
Chr11	irgsp1_rep	three_prime_UTR	25768491	25768772	.	-	.	Parent=Os11t0648000-02
Chr11	irgsp1_rep	mRNA	25775838	25778520	.	-	.	ID=Os11t0648100-01;Name=Os11t0648100-01;Locus_id=Os11g0648100;Note=Kinesin%2C motor domain domain containing protein.;Transcript_evidence=AK071093 (DDBJ%2C Best hit);ORF_evidence=A2YSV6 (UniProt);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752);NIAS_FLcDNA=J023080D22;TENOR=Os11t0648100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	25778517	25778520	.	-	.	Parent=Os11t0648100-01
Chr11	irgsp1_rep	CDS	25778327	25778516	.	-	0	Parent=Os11t0648100-01
Chr11	irgsp1_rep	CDS	25778109	25778215	.	-	2	Parent=Os11t0648100-01
Chr11	irgsp1_rep	CDS	25777802	25777989	.	-	0	Parent=Os11t0648100-01
Chr11	irgsp1_rep	CDS	25777547	25777711	.	-	1	Parent=Os11t0648100-01
Chr11	irgsp1_rep	CDS	25777448	25777463	.	-	1	Parent=Os11t0648100-01
Chr11	irgsp1_rep	three_prime_UTR	25777235	25777447	.	-	.	Parent=Os11t0648100-01
Chr11	irgsp1_rep	three_prime_UTR	25777085	25777122	.	-	.	Parent=Os11t0648100-01
Chr11	irgsp1_rep	three_prime_UTR	25776862	25776989	.	-	.	Parent=Os11t0648100-01
Chr11	irgsp1_rep	three_prime_UTR	25775838	25776770	.	-	.	Parent=Os11t0648100-01
Chr11	irgsp1_rep	mRNA	25806201	25810387	.	-	.	ID=Os11t0648400-01;Name=Os11t0648400-01;Locus_id=Os11g0648400;Note=Protein of unknown function DUF3615 domain containing protein.;Transcript_evidence=AK073033 (DDBJ%2C Best hit);ORF_evidence=Q2R0E3 (UniProt);InterPro=Protein of unknown function DUF3615 (IPR022059);NIAS_FLcDNA=J023145H07;Expression=AK073033;TENOR=Os11t0648400-01;KEGG=Os11t0648400-01
Chr11	irgsp1_rep	five_prime_UTR	25810339	25810387	.	-	.	Parent=Os11t0648400-01
Chr11	irgsp1_rep	CDS	25810199	25810338	.	-	0	Parent=Os11t0648400-01
Chr11	irgsp1_rep	CDS	25809605	25809694	.	-	1	Parent=Os11t0648400-01
Chr11	irgsp1_rep	CDS	25808875	25808991	.	-	1	Parent=Os11t0648400-01
Chr11	irgsp1_rep	CDS	25807741	25807806	.	-	1	Parent=Os11t0648400-01
Chr11	irgsp1_rep	CDS	25807322	25807467	.	-	1	Parent=Os11t0648400-01
Chr11	irgsp1_rep	CDS	25807089	25807240	.	-	2	Parent=Os11t0648400-01
Chr11	irgsp1_rep	CDS	25806773	25807009	.	-	0	Parent=Os11t0648400-01
Chr11	irgsp1_rep	three_prime_UTR	25806201	25806772	.	-	.	Parent=Os11t0648400-01
Chr11	irgsp1_rep	mRNA	25827938	25833625	.	+	.	ID=Os11t0648700-01;Name=Os11t0648700-01;Locus_id=Os11g0648700;Note=Protein of unknown function DUF3615 domain containing protein.;Transcript_evidence=AK106845 (DDBJ%2C Best hit);ORF_evidence=Q2R0E0 (UniProt);InterPro=Protein of unknown function DUF3615 (IPR022059);NIAS_FLcDNA=002-118-A01;TENOR=Os11t0648700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	25827938	25828313	.	+	.	Parent=Os11t0648700-01
Chr11	irgsp1_rep	five_prime_UTR	25829103	25829223	.	+	.	Parent=Os11t0648700-01
Chr11	irgsp1_rep	CDS	25829224	25829251	.	+	0	Parent=Os11t0648700-01
Chr11	irgsp1_rep	CDS	25829348	25829444	.	+	2	Parent=Os11t0648700-01
Chr11	irgsp1_rep	CDS	25829544	25829663	.	+	1	Parent=Os11t0648700-01
Chr11	irgsp1_rep	CDS	25829754	25829870	.	+	1	Parent=Os11t0648700-01
Chr11	irgsp1_rep	CDS	25830378	25830473	.	+	1	Parent=Os11t0648700-01
Chr11	irgsp1_rep	CDS	25830950	25831243	.	+	1	Parent=Os11t0648700-01
Chr11	irgsp1_rep	CDS	25832786	25832891	.	+	1	Parent=Os11t0648700-01
Chr11	irgsp1_rep	CDS	25832998	25833199	.	+	0	Parent=Os11t0648700-01
Chr11	irgsp1_rep	CDS	25833304	25833425	.	+	2	Parent=Os11t0648700-01
Chr11	irgsp1_rep	three_prime_UTR	25833426	25833625	.	+	.	Parent=Os11t0648700-01
Chr11	irgsp1_rep	mRNA	25834203	25836698	.	-	.	ID=Os11t0648800-01;Name=Os11t0648800-01;Locus_id=Os11g0648800;Note=Hypothetical conserved gene.;Transcript_evidence=AK242934 (DDBJ%2C Best hit);ORF_evidence=A2X4E4 (UniProt);InterPro=Protein of unknown function DUF3615 (IPR022059);NIAS_FLcDNA=J090086L04;TENOR=Os11t0648800-01;KEGG=Os11t0648800-01
Chr11	irgsp1_rep	five_prime_UTR	25836595	25836698	.	-	.	Parent=Os11t0648800-01
Chr11	irgsp1_rep	CDS	25836422	25836594	.	-	0	Parent=Os11t0648800-01
Chr11	irgsp1_rep	CDS	25835920	25836039	.	-	1	Parent=Os11t0648800-01
Chr11	irgsp1_rep	CDS	25835657	25835749	.	-	1	Parent=Os11t0648800-01
Chr11	irgsp1_rep	CDS	25835054	25835381	.	-	1	Parent=Os11t0648800-01
Chr11	irgsp1_rep	CDS	25834739	25834943	.	-	0	Parent=Os11t0648800-01
Chr11	irgsp1_rep	CDS	25834527	25834663	.	-	2	Parent=Os11t0648800-01
Chr11	irgsp1_rep	three_prime_UTR	25834203	25834526	.	-	.	Parent=Os11t0648800-01
Chr11	irgsp1_rep	mRNA	25840593	25846990	.	-	.	ID=Os11t0649000-00;Name=Os11t0649000-00;Locus_id=Os11g0649000;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8ACY9 (UniProt);TENOR=Os11t0649000-00
Chr11	irgsp1_rep	CDS	25846535	25846990	.	-	0	Parent=Os11t0649000-00
Chr11	irgsp1_rep	CDS	25846260	25846457	.	-	0	Parent=Os11t0649000-00
Chr11	irgsp1_rep	CDS	25845510	25846004	.	-	0	Parent=Os11t0649000-00
Chr11	irgsp1_rep	CDS	25844320	25845423	.	-	0	Parent=Os11t0649000-00
Chr11	irgsp1_rep	CDS	25843795	25844107	.	-	0	Parent=Os11t0649000-00
Chr11	irgsp1_rep	CDS	25843366	25843609	.	-	2	Parent=Os11t0649000-00
Chr11	irgsp1_rep	CDS	25843097	25843286	.	-	1	Parent=Os11t0649000-00
Chr11	irgsp1_rep	CDS	25842245	25842415	.	-	0	Parent=Os11t0649000-00
Chr11	irgsp1_rep	CDS	25841539	25841610	.	-	0	Parent=Os11t0649000-00
Chr11	irgsp1_rep	CDS	25840916	25840987	.	-	0	Parent=Os11t0649000-00
Chr11	irgsp1_rep	CDS	25840593	25840838	.	-	0	Parent=Os11t0649000-00
Chr11	irgsp1_rep	mRNA	25877770	25882187	.	-	.	ID=Os11t0649300-01;Name=Os11t0649300-01;Locus_id=Os11g0649300;Note=Hypothetical conserved gene.;Transcript_evidence=AK242598 (DDBJ%2C Best hit);ORF_evidence=Q2R0D5 (UniProt);InterPro=Protein of unknown function DUF3615 (IPR022059);NIAS_FLcDNA=J090013N22;TENOR=Os11t0649300-01;KEGG=Os11t0649300-01
Chr11	irgsp1_rep	five_prime_UTR	25882124	25882187	.	-	.	Parent=Os11t0649300-01
Chr11	irgsp1_rep	CDS	25881915	25882123	.	-	0	Parent=Os11t0649300-01
Chr11	irgsp1_rep	CDS	25880843	25880989	.	-	1	Parent=Os11t0649300-01
Chr11	irgsp1_rep	CDS	25880634	25880753	.	-	1	Parent=Os11t0649300-01
Chr11	irgsp1_rep	CDS	25879337	25879426	.	-	1	Parent=Os11t0649300-01
Chr11	irgsp1_rep	CDS	25878974	25879198	.	-	1	Parent=Os11t0649300-01
Chr11	irgsp1_rep	CDS	25878569	25878674	.	-	1	Parent=Os11t0649300-01
Chr11	irgsp1_rep	CDS	25878287	25878491	.	-	0	Parent=Os11t0649300-01
Chr11	irgsp1_rep	CDS	25877986	25878179	.	-	2	Parent=Os11t0649300-01
Chr11	irgsp1_rep	three_prime_UTR	25877770	25877985	.	-	.	Parent=Os11t0649300-01
Chr11	irgsp1_rep	mRNA	25886463	25887391	.	-	.	ID=Os11t0649400-01;Name=Os11t0649400-01;Locus_id=Os11g0649400;Note=Similar to Plant integral membrane protein TIGR01569 containing protein%2C expressed.;Transcript_evidence=AK287600 (DDBJ%2C Best hit);ORF_evidence=C5Y7C6 (UniProt);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup (IPR006459),Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);NIAS_FLcDNA=J065051N23;TENOR=Os11t0649400-01;KEGG=Os11t0649400-01
Chr11	irgsp1_rep	five_prime_UTR	25887335	25887391	.	-	.	Parent=Os11t0649400-01
Chr11	irgsp1_rep	CDS	25887174	25887334	.	-	0	Parent=Os11t0649400-01
Chr11	irgsp1_rep	CDS	25886722	25887076	.	-	1	Parent=Os11t0649400-01
Chr11	irgsp1_rep	three_prime_UTR	25886463	25886721	.	-	.	Parent=Os11t0649400-01
Chr11	irgsp1_rep	mRNA	25890574	25891134	.	-	.	ID=Os11t0649500-00;Name=Os11t0649500-00;Locus_id=Os11g0649500;Note=Uncharacterised protein family UPF0497%2C trans-membrane plant domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001068376.1 (RefSeq);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);TENOR=Os11t0649500-00;KEGG=Os11t0649500-00
Chr11	irgsp1_rep	CDS	25890574	25891134	.	-	0	Parent=Os11t0649500-00
Chr11	irgsp1_rep	mRNA	25893929	25895032	.	-	.	ID=Os11t0649600-01;Name=Os11t0649600-01;Locus_id=Os11g0649600;Note=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup domain containing protein.;Transcript_evidence=AK060103 (DDBJ%2C Best hit);ORF_evidence=C5Y7C7 (UniProt);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup (IPR006459),Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);NIAS_FLcDNA=006-308-A09;Expression=AK060103;TENOR=Os11t0649600-01;KEGG=Os11t0649600-01
Chr11	irgsp1_rep	five_prime_UTR	25894886	25895032	.	-	.	Parent=Os11t0649600-01
Chr11	irgsp1_rep	CDS	25894692	25894885	.	-	0	Parent=Os11t0649600-01
Chr11	irgsp1_rep	CDS	25894170	25894590	.	-	1	Parent=Os11t0649600-01
Chr11	irgsp1_rep	three_prime_UTR	25893929	25894169	.	-	.	Parent=Os11t0649600-01
Chr11	irgsp1_rep	mRNA	25895922	25897219	.	-	.	ID=Os11t0649700-01;Name=Os11t0649700-01;Locus_id=Os11g0649700;Note=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup domain containing protein.;Transcript_evidence=AK059842 (DDBJ%2C Best hit);ORF_evidence=C5Y376 (UniProt);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup (IPR006459),Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);NIAS_FLcDNA=006-206-D11;Expression=AK059842;TENOR=Os11t0649700-01;KEGG=Os11t0649700-01
Chr11	irgsp1_rep	five_prime_UTR	25897167	25897219	.	-	.	Parent=Os11t0649700-01
Chr11	irgsp1_rep	five_prime_UTR	25896692	25896734	.	-	.	Parent=Os11t0649700-01
Chr11	irgsp1_rep	CDS	25896137	25896691	.	-	0	Parent=Os11t0649700-01
Chr11	irgsp1_rep	three_prime_UTR	25895922	25896136	.	-	.	Parent=Os11t0649700-01
Chr11	irgsp1_rep	mRNA	25911494	25916463	.	-	.	ID=Os11t0649801-00;Name=Os11t0649801-00;Locus_id=Os11g0649801;Note=Similar to E3 ubiquitin-protein ligase EL5.;Transcript_evidence=FP092295 (DDBJ);ORF_evidence=Q9LRB7 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);TENOR=Os11t0649801-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	25916428	25916463	.	-	.	Parent=Os11t0649801-00
Chr11	irgsp1_rep	CDS	25916272	25916427	.	-	0	Parent=Os11t0649801-00
Chr11	irgsp1_rep	CDS	25911494	25913191	.	-	0	Parent=Os11t0649801-00
Chr11	irgsp1_rep	mRNA	25911497	25913236	.	+	.	ID=Os11t0649900-00;Name=Os11t0649900-00;Locus_id=Os11g0649900;CGSNL Gene Symbol=EXO70H1;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H1;Oryzabase Gene Symbol Synonym(s)=OsEXO70H1a%2C EXO70H1a%2C OsExo70H1a%2C OsEXO70H1b%2C EXO70H1b%2C OrysaH1_Exo70;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein H1a%2C exocyst subunit EXO70 family protein H1b;Note=Exo70 exocyst complex subunit family protein.;Transcript_evidence=AK362164 (DDBJ);ORF_evidence=NP_001176684.1 (RefSeq);GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exo70 exocyst complex subunit (IPR004140),Cullin repeat-like-containing domain (IPR016159);Oryzabase=20338;TENOR=Os11t0649900-00;KEGG=Os11t0649900-00
Chr11	irgsp1_rep	CDS	25911497	25913236	.	+	0	Parent=Os11t0649900-00
Chr11	irgsp1_rep	mRNA	25944119	25948346	.	+	.	ID=Os11t0650500-00;Name=Os11t0650500-00;Locus_id=Os11g0650500;Note=Hypothetical conserved gene.;Transcript_evidence=CT835645 (DDBJ%2C Best hit);ORF_evidence=B8A860 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=von Willebrand factor%2C type A (IPR002035);TENOR=Os11t0650500-00;KEGG=Os11t0650500-00
Chr11	irgsp1_rep	five_prime_UTR	25944119	25944195	.	+	.	Parent=Os11t0650500-00
Chr11	irgsp1_rep	CDS	25944196	25944204	.	+	0	Parent=Os11t0650500-00
Chr11	irgsp1_rep	CDS	25944947	25945375	.	+	0	Parent=Os11t0650500-00
Chr11	irgsp1_rep	CDS	25945756	25947021	.	+	0	Parent=Os11t0650500-00
Chr11	irgsp1_rep	CDS	25948012	25948083	.	+	0	Parent=Os11t0650500-00
Chr11	irgsp1_rep	three_prime_UTR	25948084	25948346	.	+	.	Parent=Os11t0650500-00
Chr11	irgsp1_rep	mRNA	25950530	25952239	.	+	.	ID=Os11t0650600-00;Name=Os11t0650600-00;Locus_id=Os11g0650600;Note=Similar to von Willebrand factor type A domain containing protein%2C expressed.;Transcript_evidence=FP091693 (DDBJ);ORF_evidence=Q2R0C5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=von Willebrand factor%2C type A (IPR002035);TENOR=Os11t0650600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	25950530	25952239	.	+	0	Parent=Os11t0650600-00
Chr11	irgsp1_rep	mRNA	25958798	25960537	.	+	.	ID=Os11t0650700-00;Name=Os11t0650700-00;Locus_id=Os11g0650700;Note=Exo70 exocyst complex subunit family protein.;Transcript_evidence=AK354709 (DDBJ);ORF_evidence=NP_001176684.1 (RefSeq);GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exo70 exocyst complex subunit (IPR004140),Cullin repeat-like-containing domain (IPR016159);TENOR=Os11t0650700-00;KEGG=Os11t0650700-00
Chr11	irgsp1_rep	CDS	25958798	25960537	.	+	0	Parent=Os11t0650700-00
Chr11	irgsp1_rep	mRNA	26002982	26003373	.	-	.	ID=Os11t0651166-00;Name=Os11t0651166-00;Locus_id=Os11g0651166;Note=Hypothetical protein.;Transcript_evidence=AK368807 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0651166-00
Chr11	irgsp1_rep	CDS	26002982	26003373	.	-	0	Parent=Os11t0651166-00
Chr11	irgsp1_rep	mRNA	26027842	26032480	.	-	.	ID=Os11t0652100-01;Name=Os11t0652100-01;Locus_id=Os11g0652100;Note=NB-ARC domain containing protein.;Transcript_evidence=AK103061 (DDBJ%2C Best hit);ORF_evidence=A2ZTA0 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);NIAS_FLcDNA=J033117L21;Expression=AK103061;TENOR=Os11t0652100-01;KEGG=Os11t0652100-01
Chr11	irgsp1_rep	five_prime_UTR	26032292	26032480	.	-	.	Parent=Os11t0652100-01
Chr11	irgsp1_rep	CDS	26028260	26032291	.	-	0	Parent=Os11t0652100-01
Chr11	irgsp1_rep	three_prime_UTR	26027842	26028259	.	-	.	Parent=Os11t0652100-01
Chr11	irgsp1_rep	mRNA	26049506	26053657	.	-	.	ID=Os11t0652600-01;Name=Os11t0652600-01;Locus_id=Os11g0652600;Note=Protein of unknown function DUF594 domain containing protein.;Transcript_evidence=AK241306 (DDBJ%2C Best hit);ORF_evidence=NP_001176685.1 (RefSeq);InterPro=Protein of unknown function DUF594 (IPR007658);NIAS_FLcDNA=J065140N17;TENOR=Os11t0652600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	26053521	26053657	.	-	.	Parent=Os11t0652600-01
Chr11	irgsp1_rep	CDS	26053512	26053520	.	-	0	Parent=Os11t0652600-01
Chr11	irgsp1_rep	CDS	26053191	26053231	.	-	0	Parent=Os11t0652600-01
Chr11	irgsp1_rep	CDS	26052084	26053133	.	-	1	Parent=Os11t0652600-01
Chr11	irgsp1_rep	CDS	26049595	26050495	.	-	1	Parent=Os11t0652600-01
Chr11	irgsp1_rep	three_prime_UTR	26049506	26049594	.	-	.	Parent=Os11t0652600-01
Chr11	irgsp1_rep	mRNA	26058375	26059083	.	-	.	ID=Os11t0652900-00;Name=Os11t0652900-00;Locus_id=Os11g0652900;Note=Similar to tropinone reductase 2.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001151188.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);TENOR=Os11t0652900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	26058995	26059083	.	-	0	Parent=Os11t0652900-00
Chr11	irgsp1_rep	CDS	26058375	26058921	.	-	1	Parent=Os11t0652900-00
Chr11	irgsp1_rep	mRNA	26088071	26091283	.	-	.	ID=Os11t0653300-01;Name=Os11t0653300-01;Locus_id=Os11g0653300;Note=Conserved hypothetical protein.;Transcript_evidence=AK119392 (DDBJ%2C Best hit);ORF_evidence=A2ZGH3 (UniProt);NIAS_FLcDNA=001-132-C12;Expression=AK119392;TENOR=Os11t0653300-01;KEGG=Os11t0653300-01
Chr11	irgsp1_rep	five_prime_UTR	26091124	26091283	.	-	.	Parent=Os11t0653300-01
Chr11	irgsp1_rep	CDS	26088577	26091123	.	-	0	Parent=Os11t0653300-01
Chr11	irgsp1_rep	three_prime_UTR	26088071	26088576	.	-	.	Parent=Os11t0653300-01
Chr11	irgsp1_rep	mRNA	26140051	26144230	.	-	.	ID=Os11t0654000-01;Name=Os11t0654000-01;Locus_id=Os11g0654000;Note=Hypothetical protein.;Transcript_evidence=AK103545 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033132E09;Expression=AK103545;TENOR=Os11t0654000-01;KEGG=Os11t0654000-01
Chr11	irgsp1_rep	five_prime_UTR	26144078	26144230	.	-	.	Parent=Os11t0654000-01
Chr11	irgsp1_rep	five_prime_UTR	26143911	26143948	.	-	.	Parent=Os11t0654000-01
Chr11	irgsp1_rep	five_prime_UTR	26142336	26143546	.	-	.	Parent=Os11t0654000-01
Chr11	irgsp1_rep	CDS	26141817	26142335	.	-	0	Parent=Os11t0654000-01
Chr11	irgsp1_rep	three_prime_UTR	26140907	26141816	.	-	.	Parent=Os11t0654000-01
Chr11	irgsp1_rep	three_prime_UTR	26140051	26140846	.	-	.	Parent=Os11t0654000-01
Chr11	irgsp1_rep	mRNA	26140052	26141846	.	-	.	ID=Os11t0654000-02;Name=Os11t0654000-02;Locus_id=Os11g0654000;Note=Hypothetical gene.;Transcript_evidence=AK064403 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-108-H06;Expression=AK064403;TENOR=Os11t0654000-02;KEGG=Os11t0654000-02
Chr11	irgsp1_rep	five_prime_UTR	26141374	26141846	.	-	.	Parent=Os11t0654000-02
Chr11	irgsp1_rep	CDS	26141050	26141373	.	-	0	Parent=Os11t0654000-02
Chr11	irgsp1_rep	three_prime_UTR	26140052	26141049	.	-	.	Parent=Os11t0654000-02
Chr11	irgsp1_rep	mRNA	26140215	26143460	.	+	.	ID=Os11t0654100-01;Name=Os11t0654100-01;Locus_id=Os11g0654100;Note=NB-ARC domain containing protein.;Transcript_evidence=AK241540 (DDBJ%2C Best hit);ORF_evidence=Q2R087 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);NIAS_FLcDNA=J065175H19;TENOR=Os11t0654100-01;KEGG=Os11t0654100-01
Chr11	irgsp1_rep	five_prime_UTR	26140215	26140272	.	+	.	Parent=Os11t0654100-01
Chr11	irgsp1_rep	CDS	26140273	26143056	.	+	0	Parent=Os11t0654100-01
Chr11	irgsp1_rep	three_prime_UTR	26143057	26143460	.	+	.	Parent=Os11t0654100-01
Chr11	irgsp1_rep	mRNA	26168962	26170310	.	-	.	ID=Os11t0654400-00;Name=Os11t0654400-00;Locus_id=Os11g0654400;Note=Similar to tropinone reductase 2.;Transcript_evidence=AK363933 (DDBJ);ORF_evidence=NP_001151188.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);TENOR=Os11t0654400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	26170261	26170310	.	-	.	Parent=Os11t0654400-00
Chr11	irgsp1_rep	CDS	26170172	26170260	.	-	0	Parent=Os11t0654400-00
Chr11	irgsp1_rep	CDS	26169543	26170092	.	-	1	Parent=Os11t0654400-00
Chr11	irgsp1_rep	CDS	26168969	26169133	.	-	0	Parent=Os11t0654400-00
Chr11	irgsp1_rep	three_prime_UTR	26168962	26168968	.	-	.	Parent=Os11t0654400-00
Chr11	irgsp1_rep	mRNA	26195130	26198011	.	-	.	ID=Os11t0654800-01;Name=Os11t0654800-01;Locus_id=Os11g0654800;Note=Conserved hypothetical protein.;Transcript_evidence=AK119407 (DDBJ%2C Best hit);ORF_evidence=A2ZGH4 (UniProt);NIAS_FLcDNA=001-132-F02;Expression=AK119407;TENOR=Os11t0654800-01;KEGG=Os11t0654800-01
Chr11	irgsp1_rep	five_prime_UTR	26197948	26198011	.	-	.	Parent=Os11t0654800-01
Chr11	irgsp1_rep	five_prime_UTR	26197785	26197860	.	-	.	Parent=Os11t0654800-01
Chr11	irgsp1_rep	CDS	26195346	26197784	.	-	0	Parent=Os11t0654800-01
Chr11	irgsp1_rep	three_prime_UTR	26195130	26195345	.	-	.	Parent=Os11t0654800-01
Chr11	irgsp1_rep	mRNA	26203554	26205990	.	+	.	ID=Os11t0655000-01;Name=Os11t0655000-01;Locus_id=Os11g0655000;Note=Conserved hypothetical protein.;Transcript_evidence=AK103150 (DDBJ%2C Best hit);ORF_evidence=B8BLM7 (UniProt);NIAS_FLcDNA=J033120N24;TENOR=Os11t0655000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	26203554	26203706	.	+	.	Parent=Os11t0655000-01
Chr11	irgsp1_rep	CDS	26203707	26203847	.	+	0	Parent=Os11t0655000-01
Chr11	irgsp1_rep	CDS	26203939	26204172	.	+	0	Parent=Os11t0655000-01
Chr11	irgsp1_rep	three_prime_UTR	26204173	26205990	.	+	.	Parent=Os11t0655000-01
Chr11	irgsp1_rep	mRNA	26212332	26214258	.	-	.	ID=Os11t0655100-01;Name=Os11t0655100-01;Locus_id=Os11g0655100;Note=Hypothetical protein.;Transcript_evidence=AK063746 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-120-G04;Expression=AK063746;TENOR=Os11t0655100-01;KEGG=Os11t0655100-01
Chr11	irgsp1_rep	five_prime_UTR	26213783	26214258	.	-	.	Parent=Os11t0655100-01
Chr11	irgsp1_rep	CDS	26213661	26213782	.	-	0	Parent=Os11t0655100-01
Chr11	irgsp1_rep	CDS	26212970	26213600	.	-	1	Parent=Os11t0655100-01
Chr11	irgsp1_rep	three_prime_UTR	26212770	26212969	.	-	.	Parent=Os11t0655100-01
Chr11	irgsp1_rep	three_prime_UTR	26212332	26212654	.	-	.	Parent=Os11t0655100-01
Chr11	irgsp1_rep	mRNA	26212918	26216126	.	+	.	ID=Os11t0655200-01;Name=Os11t0655200-01;Locus_id=Os11g0655200;Note=NB-ARC domain containing protein.;Transcript_evidence=AK242963 (DDBJ%2C Best hit);ORF_evidence=Q2R087 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);NIAS_FLcDNA=J090090L03;TENOR=Os11t0655200-01;KEGG=Os11t0655200-01
Chr11	irgsp1_rep	five_prime_UTR	26212918	26213035	.	+	.	Parent=Os11t0655200-01
Chr11	irgsp1_rep	CDS	26213036	26214523	.	+	0	Parent=Os11t0655200-01
Chr11	irgsp1_rep	three_prime_UTR	26214524	26216126	.	+	.	Parent=Os11t0655200-01
Chr11	irgsp1_rep	mRNA	26217692	26220753	.	+	.	ID=Os11t0655300-01;Name=Os11t0655300-01;Locus_id=Os11g0655300;Note=NB-ARC domain containing protein.;Transcript_evidence=AK074002 (DDBJ%2C Best hit);ORF_evidence=A2ZGH7 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J033076B20;Expression=AK074002;TENOR=Os11t0655300-01;KEGG=Os11t0655300-01
Chr11	irgsp1_rep	five_prime_UTR	26217692	26217829	.	+	.	Parent=Os11t0655300-01
Chr11	irgsp1_rep	CDS	26217830	26220748	.	+	0	Parent=Os11t0655300-01
Chr11	irgsp1_rep	three_prime_UTR	26220749	26220753	.	+	.	Parent=Os11t0655300-01
Chr11	irgsp1_rep	mRNA	26259796	26261416	.	-	.	ID=Os11t0655700-00;Name=Os11t0655700-00;Locus_id=Os11g0655700;Note=Similar to Leucine Rich Repeat family protein.;Transcript_evidence=AK362659 (DDBJ);ORF_evidence=Q2R078 (UniProt);TENOR=Os11t0655700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	26260142	26261416	.	-	0	Parent=Os11t0655700-00
Chr11	irgsp1_rep	three_prime_UTR	26260141	26260141	.	-	.	Parent=Os11t0655700-00
Chr11	irgsp1_rep	three_prime_UTR	26259796	26259991	.	-	.	Parent=Os11t0655700-00
Chr11	irgsp1_rep	mRNA	26263729	26267141	.	+	.	ID=Os11t0655800-01;Name=Os11t0655800-01;Locus_id=Os11g0655800;Note=Lipase%2C class 3 family protein.;Transcript_evidence=AK099612 (DDBJ%2C Best hit);ORF_evidence=NP_001150612.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921),Twin-arginine translocation pathway%2C signal sequence (IPR006311);NIAS_FLcDNA=J013049P13;Expression=AK099612;TENOR=Os11t0655800-01;KEGG=Os11t0655800-01
Chr11	irgsp1_rep	five_prime_UTR	26263729	26263794	.	+	.	Parent=Os11t0655800-01
Chr11	irgsp1_rep	CDS	26263795	26263924	.	+	0	Parent=Os11t0655800-01
Chr11	irgsp1_rep	CDS	26264684	26264763	.	+	2	Parent=Os11t0655800-01
Chr11	irgsp1_rep	CDS	26265120	26265185	.	+	0	Parent=Os11t0655800-01
Chr11	irgsp1_rep	CDS	26265295	26265342	.	+	0	Parent=Os11t0655800-01
Chr11	irgsp1_rep	CDS	26265445	26265512	.	+	0	Parent=Os11t0655800-01
Chr11	irgsp1_rep	CDS	26265623	26265695	.	+	1	Parent=Os11t0655800-01
Chr11	irgsp1_rep	CDS	26265792	26265953	.	+	0	Parent=Os11t0655800-01
Chr11	irgsp1_rep	CDS	26266261	26266455	.	+	0	Parent=Os11t0655800-01
Chr11	irgsp1_rep	CDS	26266544	26266632	.	+	0	Parent=Os11t0655800-01
Chr11	irgsp1_rep	CDS	26266706	26266895	.	+	1	Parent=Os11t0655800-01
Chr11	irgsp1_rep	three_prime_UTR	26266896	26267141	.	+	.	Parent=Os11t0655800-01
Chr11	irgsp1_rep	mRNA	26269974	26270560	.	+	.	ID=Os11t0655900-01;Name=Os11t0655900-01;Locus_id=Os11g0655900;CGSNL Gene Symbol=GRX23;CGSNL Gene Name=GLUTAREDOXIN 23;Oryzabase Gene Symbol Synonym(s)=OsGRX23;Oryzabase Gene Name Synonym(s)=glutaredoxin 23;Note=Thioredoxin fold domain containing protein.;Transcript_evidence=AK108017 (DDBJ%2C Best hit);ORF_evidence=Q2R076 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin (IPR002109),Glutaredoxin-like%2C plant II (IPR011905),Thioredoxin-like fold (IPR012336),Glutaredoxin subgroup (IPR014025);NIAS_FLcDNA=002-135-H11;Oryzabase=13574;Expression=AK108017;TENOR=Os11t0655900-01;KEGG=Os11t0655900-01
Chr11	irgsp1_rep	five_prime_UTR	26269974	26270067	.	+	.	Parent=Os11t0655900-01
Chr11	irgsp1_rep	CDS	26270068	26270394	.	+	0	Parent=Os11t0655900-01
Chr11	irgsp1_rep	three_prime_UTR	26270395	26270560	.	+	.	Parent=Os11t0655900-01
Chr11	irgsp1_rep	mRNA	26275728	26276206	.	+	.	ID=Os11t0656000-00;Name=Os11t0656000-00;Locus_id=Os11g0656000;CGSNL Gene Symbol=GRX24;CGSNL Gene Name=GLUTAREDOXIN 24;Oryzabase Gene Symbol Synonym(s)=OsGRX24;Oryzabase Gene Name Synonym(s)=glutaredoxin 24;Note=Similar to Glutaredoxin-C13.;Transcript_evidence=AK249683 (DDBJ);ORF_evidence=Q0IRB0 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin (IPR002109),Glutaredoxin-like%2C plant II (IPR011905),Thioredoxin-like fold (IPR012336),Glutaredoxin subgroup (IPR014025);Oryzabase=13575;TENOR=Os11t0656000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	26275728	26275809	.	+	.	Parent=Os11t0656000-00
Chr11	irgsp1_rep	CDS	26275810	26276139	.	+	0	Parent=Os11t0656000-00
Chr11	irgsp1_rep	three_prime_UTR	26276140	26276206	.	+	.	Parent=Os11t0656000-00
Chr11	irgsp1_rep	mRNA	26276743	26279626	.	-	.	ID=Os11t0656100-00;Name=Os11t0656100-00;Locus_id=Os11g0656100;Note=Hypothetical gene.;Transcript_evidence=AK063020 (DDBJ%2C Secondary hit);ORF_evidence=B9FBV5 (UniProt);Expression=AK063020;TENOR=Os11t0656100-00;KEGG=Os11t0656100-00
Chr11	irgsp1_rep	five_prime_UTR	26279626	26279626	.	-	.	Parent=Os11t0656100-00
Chr11	irgsp1_rep	CDS	26279206	26279625	.	-	0	Parent=Os11t0656100-00
Chr11	irgsp1_rep	three_prime_UTR	26279188	26279205	.	-	.	Parent=Os11t0656100-00
Chr11	irgsp1_rep	three_prime_UTR	26278704	26278797	.	-	.	Parent=Os11t0656100-00
Chr11	irgsp1_rep	three_prime_UTR	26278555	26278615	.	-	.	Parent=Os11t0656100-00
Chr11	irgsp1_rep	three_prime_UTR	26277837	26277883	.	-	.	Parent=Os11t0656100-00
Chr11	irgsp1_rep	three_prime_UTR	26277572	26277674	.	-	.	Parent=Os11t0656100-00
Chr11	irgsp1_rep	three_prime_UTR	26277014	26277057	.	-	.	Parent=Os11t0656100-00
Chr11	irgsp1_rep	three_prime_UTR	26276743	26276885	.	-	.	Parent=Os11t0656100-00
Chr11	irgsp1_rep	mRNA	26284758	26285439	.	-	.	ID=Os11t0656201-00;Name=Os11t0656201-00;Locus_id=Os11g0656201;Note=Hypothetical gene.;Transcript_evidence=AK062878 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;Expression=AK062878;TENOR=Os11t0656201-00;KEGG=Os11t0656201-00
Chr11	irgsp1_rep	five_prime_UTR	26285438	26285439	.	-	.	Parent=Os11t0656201-00
Chr11	irgsp1_rep	CDS	26285138	26285437	.	-	0	Parent=Os11t0656201-00
Chr11	irgsp1_rep	three_prime_UTR	26285133	26285137	.	-	.	Parent=Os11t0656201-00
Chr11	irgsp1_rep	three_prime_UTR	26284758	26285124	.	-	.	Parent=Os11t0656201-00
Chr11	irgsp1_rep	mRNA	26285141	26285470	.	+	.	ID=Os11t0656400-00;Name=Os11t0656400-00;Locus_id=Os11g0656400;CGSNL Gene Symbol=GRX25;CGSNL Gene Name=GLUTAREDOXIN 25;Oryzabase Gene Symbol Synonym(s)=OsGRX25;Oryzabase Gene Name Synonym(s)=glutaredoxin 25;Note=Similar to Glutaredoxin-C13.;Transcript_evidence=Q2R073 (UniProt);ORF_evidence=Q2R073 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin (IPR002109),Glutaredoxin-like%2C plant II (IPR011905),Thioredoxin-like fold (IPR012336),Glutaredoxin subgroup (IPR014025);Oryzabase=13576;TENOR=Os11t0656400-00
Chr11	irgsp1_rep	CDS	26285141	26285470	.	+	0	Parent=Os11t0656400-00
Chr11	irgsp1_rep	mRNA	26286551	26291279	.	-	.	ID=Os11t0656500-01;Name=Os11t0656500-01;Locus_id=Os11g0656500;Note=Integrase%2C catalytic core domain containing protein.;Transcript_evidence=AK072370 (DDBJ%2C Best hit);ORF_evidence=Q01M13 (UniProt);GO=Biological Process: DNA integration (GO:0015074),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Integrase%2C catalytic core (IPR001584),Zinc finger%2C CCHC-type (IPR001878),Ribonuclease H-like (IPR012337),Zinc finger%2C CCHC retroviral-type (IPR013084),Reverse transcriptase%2C RNA-dependent DNA polymerase (IPR013103);NIAS_FLcDNA=J023073J02;Expression=AK072370;TENOR=Os11t0656500-01;KEGG=Os11t0656500-01
Chr11	irgsp1_rep	five_prime_UTR	26291095	26291279	.	-	.	Parent=Os11t0656500-01
Chr11	irgsp1_rep	CDS	26289807	26291094	.	-	0	Parent=Os11t0656500-01
Chr11	irgsp1_rep	CDS	26286790	26289704	.	-	2	Parent=Os11t0656500-01
Chr11	irgsp1_rep	three_prime_UTR	26286551	26286789	.	-	.	Parent=Os11t0656500-01
Chr11	irgsp1_rep	mRNA	26293807	26294481	.	-	.	ID=Os11t0656601-01;Name=Os11t0656601-01;Locus_id=Os11g0656601;Note=Similar to AT.I.24-1 protein (Fragment).;Transcript_evidence=AK062878 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-108-D02;Expression=AK062878;TENOR=Os11t0656601-01;KEGG=Os11t0656601-01
Chr11	irgsp1_rep	five_prime_UTR	26294459	26294481	.	-	.	Parent=Os11t0656601-01
Chr11	irgsp1_rep	CDS	26294147	26294458	.	-	0	Parent=Os11t0656601-01
Chr11	irgsp1_rep	three_prime_UTR	26293807	26294146	.	-	.	Parent=Os11t0656601-01
Chr11	irgsp1_rep	mRNA	26294183	26294512	.	+	.	ID=Os11t0656700-00;Name=Os11t0656700-00;Locus_id=Os11g0656700;CGSNL Gene Symbol=GRX26;CGSNL Gene Name=GLUTAREDOXIN 26;Oryzabase Gene Symbol Synonym(s)=OsGRX26;Oryzabase Gene Name Synonym(s)=glutaredoxin 26;Note=Glutaredoxin-C13.;Transcript_evidence=Q0IRB0 (UniProt);ORF_evidence=Q0IRB0 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin (IPR002109),Glutaredoxin-like%2C plant II (IPR011905),Thioredoxin-like fold (IPR012336),Glutaredoxin subgroup (IPR014025);Oryzabase=13577;TENOR=Os11t0656700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	26294183	26294512	.	+	0	Parent=Os11t0656700-00
Chr11	irgsp1_rep	mRNA	26299857	26305695	.	+	.	ID=Os11t0657000-01;Name=Os11t0657000-01;Locus_id=Os11g0657000;Note=Kelch repeat type 2 domain containing protein.;Transcript_evidence=AK103782 (DDBJ%2C Best hit);ORF_evidence=B9G8N4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Kelch repeat type 2 (IPR011498),Kelch-type beta propeller (IPR015915);NIAS_FLcDNA=J033145H12;TENOR=Os11t0657000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	26299857	26300689	.	+	.	Parent=Os11t0657000-01
Chr11	irgsp1_rep	CDS	26300690	26300736	.	+	0	Parent=Os11t0657000-01
Chr11	irgsp1_rep	CDS	26301317	26301392	.	+	1	Parent=Os11t0657000-01
Chr11	irgsp1_rep	CDS	26301491	26301667	.	+	0	Parent=Os11t0657000-01
Chr11	irgsp1_rep	CDS	26301795	26301872	.	+	0	Parent=Os11t0657000-01
Chr11	irgsp1_rep	CDS	26301968	26302078	.	+	0	Parent=Os11t0657000-01
Chr11	irgsp1_rep	three_prime_UTR	26302079	26302327	.	+	.	Parent=Os11t0657000-01
Chr11	irgsp1_rep	three_prime_UTR	26302438	26302499	.	+	.	Parent=Os11t0657000-01
Chr11	irgsp1_rep	three_prime_UTR	26302590	26302729	.	+	.	Parent=Os11t0657000-01
Chr11	irgsp1_rep	three_prime_UTR	26302936	26303062	.	+	.	Parent=Os11t0657000-01
Chr11	irgsp1_rep	three_prime_UTR	26303136	26303250	.	+	.	Parent=Os11t0657000-01
Chr11	irgsp1_rep	three_prime_UTR	26303439	26303527	.	+	.	Parent=Os11t0657000-01
Chr11	irgsp1_rep	three_prime_UTR	26303918	26304001	.	+	.	Parent=Os11t0657000-01
Chr11	irgsp1_rep	three_prime_UTR	26304180	26304945	.	+	.	Parent=Os11t0657000-01
Chr11	irgsp1_rep	three_prime_UTR	26305019	26305080	.	+	.	Parent=Os11t0657000-01
Chr11	irgsp1_rep	three_prime_UTR	26305415	26305695	.	+	.	Parent=Os11t0657000-01
Chr11	irgsp1_rep	mRNA	26300612	26305584	.	-	.	ID=Os11t0657050-00;Name=Os11t0657050-00;Locus_id=Os11g0657050;Note=Hypothetical protein.;Transcript_evidence=tplb0031a05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0657050-00
Chr11	irgsp1_rep	five_prime_UTR	26305393	26305584	.	-	.	Parent=Os11t0657050-00
Chr11	irgsp1_rep	five_prime_UTR	26305035	26305058	.	-	.	Parent=Os11t0657050-00
Chr11	irgsp1_rep	five_prime_UTR	26304932	26304961	.	-	.	Parent=Os11t0657050-00
Chr11	irgsp1_rep	CDS	26304641	26304931	.	-	0	Parent=Os11t0657050-00
Chr11	irgsp1_rep	three_prime_UTR	26304172	26304640	.	-	.	Parent=Os11t0657050-00
Chr11	irgsp1_rep	three_prime_UTR	26303918	26303993	.	-	.	Parent=Os11t0657050-00
Chr11	irgsp1_rep	three_prime_UTR	26303439	26303527	.	-	.	Parent=Os11t0657050-00
Chr11	irgsp1_rep	three_prime_UTR	26303121	26303250	.	-	.	Parent=Os11t0657050-00
Chr11	irgsp1_rep	three_prime_UTR	26302947	26303047	.	-	.	Parent=Os11t0657050-00
Chr11	irgsp1_rep	three_prime_UTR	26302534	26302739	.	-	.	Parent=Os11t0657050-00
Chr11	irgsp1_rep	three_prime_UTR	26302260	26302338	.	-	.	Parent=Os11t0657050-00
Chr11	irgsp1_rep	three_prime_UTR	26301966	26302071	.	-	.	Parent=Os11t0657050-00
Chr11	irgsp1_rep	three_prime_UTR	26301795	26301870	.	-	.	Parent=Os11t0657050-00
Chr11	irgsp1_rep	three_prime_UTR	26301518	26301667	.	-	.	Parent=Os11t0657050-00
Chr11	irgsp1_rep	three_prime_UTR	26301315	26301397	.	-	.	Parent=Os11t0657050-00
Chr11	irgsp1_rep	three_prime_UTR	26300612	26300728	.	-	.	Parent=Os11t0657050-00
Chr11	irgsp1_rep	mRNA	26306075	26310408	.	+	.	ID=Os11t0657100-01;Name=Os11t0657100-01;Locus_id=Os11g0657100;Note=Peptide chain release factor 1 family protein.;Transcript_evidence=AK066354 (DDBJ%2C Best hit),AK061105 (DDBJ%2C Best hit);ORF_evidence=NP_191850.2 (RefSeq);GO=Biological Process: translational termination (GO:0006415),Cellular Component: cytoplasm (GO:0005737),Molecular Function: translation release factor activity (GO:0003747),Molecular Function: translation release factor activity%2C codon specific (GO:0016149);InterPro=Peptide chain release factor class I/class II (IPR000352),Peptide chain release factor 1 (IPR004373),Peptide chain release factor (IPR005139);NIAS_FLcDNA=J013065L12,006-207-B09;Expression=AK066354;TENOR=Os11t0657100-01;KEGG=Os11t0657100-01
Chr11	irgsp1_rep	five_prime_UTR	26306075	26306115	.	+	.	Parent=Os11t0657100-01
Chr11	irgsp1_rep	CDS	26306116	26306265	.	+	0	Parent=Os11t0657100-01
Chr11	irgsp1_rep	CDS	26306399	26306455	.	+	0	Parent=Os11t0657100-01
Chr11	irgsp1_rep	CDS	26306741	26306821	.	+	0	Parent=Os11t0657100-01
Chr11	irgsp1_rep	CDS	26306939	26306996	.	+	0	Parent=Os11t0657100-01
Chr11	irgsp1_rep	CDS	26307107	26307210	.	+	2	Parent=Os11t0657100-01
Chr11	irgsp1_rep	CDS	26307283	26307334	.	+	0	Parent=Os11t0657100-01
Chr11	irgsp1_rep	CDS	26307451	26307500	.	+	2	Parent=Os11t0657100-01
Chr11	irgsp1_rep	CDS	26308353	26308418	.	+	0	Parent=Os11t0657100-01
Chr11	irgsp1_rep	CDS	26308498	26308662	.	+	0	Parent=Os11t0657100-01
Chr11	irgsp1_rep	CDS	26308750	26308822	.	+	0	Parent=Os11t0657100-01
Chr11	irgsp1_rep	CDS	26308933	26309065	.	+	2	Parent=Os11t0657100-01
Chr11	irgsp1_rep	CDS	26309365	26309422	.	+	1	Parent=Os11t0657100-01
Chr11	irgsp1_rep	CDS	26309630	26309677	.	+	0	Parent=Os11t0657100-01
Chr11	irgsp1_rep	CDS	26309812	26309895	.	+	0	Parent=Os11t0657100-01
Chr11	irgsp1_rep	CDS	26310022	26310093	.	+	0	Parent=Os11t0657100-01
Chr11	irgsp1_rep	three_prime_UTR	26310094	26310408	.	+	.	Parent=Os11t0657100-01
Chr11	irgsp1_rep	mRNA	26310875	26312789	.	-	.	ID=Os11t0657200-01;Name=Os11t0657200-01;Locus_id=Os11g0657200;Note=2OG-Fe(II) oxygenase domain containing protein.;Transcript_evidence=AK059959 (DDBJ%2C Best hit);ORF_evidence=NP_567239.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen%2C 2-oxoglutarate as one donor%2C and incorporation of one atom each of oxygen into both donors (GO:0016706);InterPro=Oxoglutarate/iron-dependent oxygenase (IPR005123);NIAS_FLcDNA=006-211-E11;Expression=AK059959;TENOR=Os11t0657200-01;KEGG=Os11t0657200-01
Chr11	irgsp1_rep	five_prime_UTR	26312777	26312789	.	-	.	Parent=Os11t0657200-01
Chr11	irgsp1_rep	CDS	26312554	26312776	.	-	0	Parent=Os11t0657200-01
Chr11	irgsp1_rep	CDS	26312050	26312078	.	-	2	Parent=Os11t0657200-01
Chr11	irgsp1_rep	CDS	26311639	26311842	.	-	0	Parent=Os11t0657200-01
Chr11	irgsp1_rep	CDS	26311102	26311425	.	-	0	Parent=Os11t0657200-01
Chr11	irgsp1_rep	three_prime_UTR	26310875	26311101	.	-	.	Parent=Os11t0657200-01
Chr11	irgsp1_rep	mRNA	26313077	26315150	.	+	.	ID=Os11t0657300-01;Name=Os11t0657300-01;Locus_id=Os11g0657300;Oryzabase Gene Name Synonym(s)=Sm gene%2C Sm family protein;Note=Similar to Small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F) (SmF).;Transcript_evidence=AK062752 (DDBJ%2C Best hit);ORF_evidence=NP_001150516.1 (RefSeq);GO=Biological Process: RNA processing (GO:0006396),Cellular Component: nucleus (GO:0005634);InterPro=Like-Sm ribonucleoprotein (LSM) domain (IPR001163),Like-Sm ribonucleoprotein (LSM) domain%2C eukaryotic/archaea-type (IPR006649),Like-Sm ribonucleoprotein (LSM)-related domain (IPR010920),Small nuclear ribonucleoprotein SmF (IPR016487);NIAS_FLcDNA=001-106-G04;Oryzabase=15657;Expression=AK062752;TENOR=Os11t0657300-01;KEGG=Os11t0657300-01
Chr11	irgsp1_rep	five_prime_UTR	26313077	26313159	.	+	.	Parent=Os11t0657300-01
Chr11	irgsp1_rep	CDS	26313160	26313165	.	+	0	Parent=Os11t0657300-01
Chr11	irgsp1_rep	CDS	26313897	26313984	.	+	0	Parent=Os11t0657300-01
Chr11	irgsp1_rep	CDS	26314288	26314325	.	+	2	Parent=Os11t0657300-01
Chr11	irgsp1_rep	CDS	26314438	26314502	.	+	0	Parent=Os11t0657300-01
Chr11	irgsp1_rep	CDS	26314841	26314904	.	+	1	Parent=Os11t0657300-01
Chr11	irgsp1_rep	three_prime_UTR	26314905	26315150	.	+	.	Parent=Os11t0657300-01
Chr11	irgsp1_rep	mRNA	26317273	26321503	.	-	.	ID=Os11t0657400-01;Name=Os11t0657400-01;Locus_id=Os11g0657400;RAP-DB Gene Symbol Synonym(s)=OsPEX1;CGSNL Gene Symbol=PEX1;CGSNL Gene Name=POLLEN EXTENSIN 1;Oryzabase Gene Symbol Synonym(s)=OsPEX1;Oryzabase Gene Name Synonym(s)=Extensin family protein%2C pollen extensin 1;Note=Leucine-rich repeat extensin-like protein%2C Lignin biosyntheis and deposition%2C Lodging resistance;Transcript_evidence=tplb0004p13 (Wheat FLcDNA);ORF_evidence=A0A0P0Y5A4;InterPro=Leucine-rich repeat domain superfamily (IPR032675),Leucine-rich repeat-containing N-terminal%2C plant-type (IPR013210);Manual Curation=June 5%2C 2020;Literature_PMID=30840202;Oryzabase=21948;TENOR=Os11t0657400-00
Chr11	irgsp1_rep	CDS	26317304	26321503	.	-	0	Parent=Os11t0657400-01
Chr11	irgsp1_rep	three_prime_UTR	26317273	26317303	.	-	.	Parent=Os11t0657400-01
Chr11	irgsp1_rep	mRNA	26342635	26342970	.	+	.	ID=Os11t0657700-00;Name=Os11t0657700-00;Locus_id=Os11g0657700;Note=EF-hand-like domain domain containing protein.;Transcript_evidence=AK252273 (DDBJ);ORF_evidence=Q33AZ2 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand-like domain (IPR011992);TENOR=Os11t0657700-00
Chr11	irgsp1_rep	five_prime_UTR	26342635	26342799	.	+	.	Parent=Os11t0657700-00
Chr11	irgsp1_rep	CDS	26342800	26342970	.	+	0	Parent=Os11t0657700-00
Chr11	irgsp1_rep	mRNA	26376803	26380866	.	+	.	ID=Os11t0657850-01;Name=Os11t0657850-01;Locus_id=Os11g0657850;Note=Hypothetical gene.;Transcript_evidence=AK318543 (DDBJ%2C Best hit),AK318554 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J075110A03,J075152C10;TENOR=Os11t0657850-01;KEGG=Os11t0657850-01
Chr11	irgsp1_rep	five_prime_UTR	26376803	26377337	.	+	.	Parent=Os11t0657850-01
Chr11	irgsp1_rep	five_prime_UTR	26377475	26379912	.	+	.	Parent=Os11t0657850-01
Chr11	irgsp1_rep	CDS	26379913	26380470	.	+	0	Parent=Os11t0657850-01
Chr11	irgsp1_rep	three_prime_UTR	26380471	26380866	.	+	.	Parent=Os11t0657850-01
Chr11	irgsp1_rep	mRNA	26377427	26380875	.	-	.	ID=Os11t0657900-00;Name=Os11t0657900-00;Locus_id=Os11g0657900;CGSNL Gene Symbol=RYMV3;CGSNL Gene Name=RESISTANCE TO YELLOW MOTTLE VIRUS-3;Oryzabase Gene Symbol Synonym(s)=OsRYMV3;Oryzabase Gene Name Synonym(s)=Rice yellow mottle virus resistant 3%2C Resistance to yellow mottle virus-3;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=AK371810 (DDBJ);ORF_evidence=Q2R057 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);Oryzabase=23697;TENOR=Os11t0657900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	26379851	26380875	.	-	0	Parent=Os11t0657900-00
Chr11	irgsp1_rep	CDS	26377427	26379494	.	-	1	Parent=Os11t0657900-00
Chr11	irgsp1_rep	mRNA	26414394	26418426	.	+	.	ID=Os11t0658700-01;Name=Os11t0658700-01;Locus_id=Os11g0658700;RAP-DB Gene Symbol Synonym(s)=MADS68%2C OsMADS68;RAP-DB Gene Name Synonym(s)=MADS BOX GENE 68%2C MADS box gene68%2C MADS box gene 68%2C MADS-box transcription factor 68;CGSNL Gene Symbol=MADS68;CGSNL Gene Name=MADS BOX GENE 68;Oryzabase Gene Symbol Synonym(s)=OsMADS68;Oryzabase Gene Name Synonym(s)=MADS box gene68%2C MADS box gene 68%2C MADS-box transcription factor 68;Note=MADS box transcription factor%2C Pollen maturation;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box (IPR002100);Manual Curation=April 22%2C 2014;Literature_PMID=23613199,17640358;Oryzabase=12304;TENOR=Os11t0658700-00
Chr11	irgsp1_rep	CDS	26414394	26414578	.	+	0	Parent=Os11t0658700-01
Chr11	irgsp1_rep	CDS	26414997	26415056	.	+	1	Parent=Os11t0658700-01
Chr11	irgsp1_rep	CDS	26415158	26415177	.	+	1	Parent=Os11t0658700-01
Chr11	irgsp1_rep	CDS	26415278	26415342	.	+	2	Parent=Os11t0658700-01
Chr11	irgsp1_rep	CDS	26415453	26415467	.	+	0	Parent=Os11t0658700-01
Chr11	irgsp1_rep	CDS	26415547	26415635	.	+	0	Parent=Os11t0658700-01
Chr11	irgsp1_rep	CDS	26415907	26416003	.	+	1	Parent=Os11t0658700-01
Chr11	irgsp1_rep	CDS	26416167	26416217	.	+	0	Parent=Os11t0658700-01
Chr11	irgsp1_rep	CDS	26416316	26416449	.	+	0	Parent=Os11t0658700-01
Chr11	irgsp1_rep	CDS	26416777	26417167	.	+	1	Parent=Os11t0658700-01
Chr11	irgsp1_rep	CDS	26418088	26418159	.	+	0	Parent=Os11t0658700-01
Chr11	irgsp1_rep	three_prime_UTR	26418160	26418426	.	+	.	Parent=Os11t0658700-01
Chr11	irgsp1_rep	mRNA	26414362	26418378	.	+	.	ID=Os11t0658700-02;Name=Os11t0658700-02;Locus_id=Os11g0658700;RAP-DB Gene Symbol Synonym(s)=MADS68%2C OsMADS68;RAP-DB Gene Name Synonym(s)=MADS BOX GENE 68%2C MADS box gene68%2C MADS box gene 68%2C MADS-box transcription factor 68;CGSNL Gene Symbol=MADS68;CGSNL Gene Name=MADS BOX GENE 68;Oryzabase Gene Symbol Synonym(s)=OsMADS68;Oryzabase Gene Name Synonym(s)=MADS box gene68%2C MADS box gene 68%2C MADS-box transcription factor 68;Note=MADS domain transcription factor%2C pollen maturation;Transcript_evidence=FM956505;ORF_evidence=G0KY82;GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box (IPR002100);Manual Curation=May 1%2C 2014;Literature_PMID=21813465;Oryzabase=12304
Chr11	irgsp1_rep	five_prime_UTR	26414362	26414393	.	+	.	Parent=Os11t0658700-02
Chr11	irgsp1_rep	CDS	26414394	26414578	.	+	0	Parent=Os11t0658700-02
Chr11	irgsp1_rep	CDS	26414997	26415056	.	+	1	Parent=Os11t0658700-02
Chr11	irgsp1_rep	CDS	26415158	26415177	.	+	1	Parent=Os11t0658700-02
Chr11	irgsp1_rep	CDS	26415278	26415342	.	+	2	Parent=Os11t0658700-02
Chr11	irgsp1_rep	CDS	26415453	26415467	.	+	0	Parent=Os11t0658700-02
Chr11	irgsp1_rep	CDS	26415574	26415635	.	+	0	Parent=Os11t0658700-02
Chr11	irgsp1_rep	CDS	26415907	26416003	.	+	1	Parent=Os11t0658700-02
Chr11	irgsp1_rep	CDS	26416167	26416217	.	+	0	Parent=Os11t0658700-02
Chr11	irgsp1_rep	CDS	26416316	26416449	.	+	0	Parent=Os11t0658700-02
Chr11	irgsp1_rep	CDS	26416777	26417167	.	+	1	Parent=Os11t0658700-02
Chr11	irgsp1_rep	CDS	26418088	26418159	.	+	0	Parent=Os11t0658700-02
Chr11	irgsp1_rep	three_prime_UTR	26418160	26418378	.	+	.	Parent=Os11t0658700-02
Chr11	irgsp1_rep	mRNA	26420114	26423933	.	-	.	ID=Os11t0658800-01;Name=Os11t0658800-01;Locus_id=Os11g0658800;Oryzabase Gene Symbol Synonym(s)=OsPGL34%2C PGL34;Oryzabase Gene Name Synonym(s)=Polygalacturonases-Like 34%2C PG-like 34;Note=Pectin lyase fold/virulence factor domain containing protein.;Transcript_evidence=AK065526 (DDBJ%2C Best hit);ORF_evidence=NP_001148987.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=J013031H05;Oryzabase=22311;Expression=AK065526;TENOR=Os11t0658800-01;KEGG=Os11t0658800-01
Chr11	irgsp1_rep	five_prime_UTR	26423717	26423933	.	-	.	Parent=Os11t0658800-01
Chr11	irgsp1_rep	CDS	26423702	26423716	.	-	0	Parent=Os11t0658800-01
Chr11	irgsp1_rep	CDS	26423053	26423349	.	-	0	Parent=Os11t0658800-01
Chr11	irgsp1_rep	CDS	26422026	26422146	.	-	0	Parent=Os11t0658800-01
Chr11	irgsp1_rep	CDS	26421772	26421946	.	-	2	Parent=Os11t0658800-01
Chr11	irgsp1_rep	CDS	26421603	26421673	.	-	1	Parent=Os11t0658800-01
Chr11	irgsp1_rep	CDS	26420527	26421197	.	-	2	Parent=Os11t0658800-01
Chr11	irgsp1_rep	three_prime_UTR	26420114	26420526	.	-	.	Parent=Os11t0658800-01
Chr11	irgsp1_rep	mRNA	26434011	26438037	.	+	.	ID=Os11t0658900-01;Name=Os11t0658900-01;Locus_id=Os11g0658900;Oryzabase Gene Name Synonym(s)=class III lipase;Note=Similar to Lipase family protein.;Transcript_evidence=AK242974 (DDBJ%2C Best hit);ORF_evidence=Q2R051 (UniProt);GO=Biological Process: lipid catabolic process (GO:0016042),Molecular Function: carboxylesterase activity (GO:0004091);InterPro=Mono-/di-acylglycerol lipase%2C N-terminal (IPR005592);NIAS_FLcDNA=J090092E19;Oryzabase=23067;TENOR=Os11t0658900-01;KEGG=Os11t0658900-01
Chr11	irgsp1_rep	CDS	26434011	26434283	.	+	0	Parent=Os11t0658900-01
Chr11	irgsp1_rep	CDS	26435074	26435265	.	+	0	Parent=Os11t0658900-01
Chr11	irgsp1_rep	CDS	26435526	26435635	.	+	0	Parent=Os11t0658900-01
Chr11	irgsp1_rep	CDS	26435855	26435897	.	+	1	Parent=Os11t0658900-01
Chr11	irgsp1_rep	three_prime_UTR	26435898	26435957	.	+	.	Parent=Os11t0658900-01
Chr11	irgsp1_rep	three_prime_UTR	26436492	26436610	.	+	.	Parent=Os11t0658900-01
Chr11	irgsp1_rep	three_prime_UTR	26436834	26437001	.	+	.	Parent=Os11t0658900-01
Chr11	irgsp1_rep	three_prime_UTR	26437127	26438037	.	+	.	Parent=Os11t0658900-01
Chr11	irgsp1_rep	mRNA	26435072	26435641	.	-	.	ID=Os11t0658950-00;Name=Os11t0658950-00;Locus_id=Os11g0658950;Note=Non-protein coding transcript.;Transcript_evidence=BT084199 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0658950-00
Chr11	irgsp1_rep	exon	26435346	26435641	.	-	.	Parent=Os11t0658950-00
Chr11	irgsp1_rep	exon	26435072	26435241	.	-	.	Parent=Os11t0658950-00
Chr11	irgsp1_rep	mRNA	26453228	26453757	.	+	.	ID=Os11t0659200-00;Name=Os11t0659200-00;Locus_id=Os11g0659200;Note=Protein of unknown function DUF581 family protein.;Transcript_evidence=FP098799 (DDBJ);ORF_evidence=NP_001176694.1 (RefSeq);InterPro=Protein of unknown function DUF581 (IPR007650);TENOR=Os11t0659200-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	26453228	26453233	.	+	.	Parent=Os11t0659200-00
Chr11	irgsp1_rep	CDS	26453234	26453502	.	+	0	Parent=Os11t0659200-00
Chr11	irgsp1_rep	CDS	26453574	26453757	.	+	1	Parent=Os11t0659200-00
Chr11	irgsp1_rep	mRNA	26458433	26468058	.	+	.	ID=Os11t0659400-00;Name=Os11t0659400-00;Locus_id=Os11g0659400;Note=Hypothetical conserved gene.;Transcript_evidence=AK067055 (DDBJ%2C Secondary hit);ORF_evidence=B8AG06 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);Expression=AK067055;TENOR=Os11t0659400-00;KEGG=Os11t0659400-00;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	26458433	26458490	.	+	.	Parent=Os11t0659400-00
Chr11	irgsp1_rep	CDS	26458491	26460071	.	+	0	Parent=Os11t0659400-00
Chr11	irgsp1_rep	three_prime_UTR	26460072	26460134	.	+	.	Parent=Os11t0659400-00
Chr11	irgsp1_rep	three_prime_UTR	26460332	26460482	.	+	.	Parent=Os11t0659400-00
Chr11	irgsp1_rep	three_prime_UTR	26465639	26465756	.	+	.	Parent=Os11t0659400-00
Chr11	irgsp1_rep	three_prime_UTR	26466115	26466165	.	+	.	Parent=Os11t0659400-00
Chr11	irgsp1_rep	three_prime_UTR	26466173	26466194	.	+	.	Parent=Os11t0659400-00
Chr11	irgsp1_rep	three_prime_UTR	26466298	26466370	.	+	.	Parent=Os11t0659400-00
Chr11	irgsp1_rep	three_prime_UTR	26466463	26466596	.	+	.	Parent=Os11t0659400-00
Chr11	irgsp1_rep	three_prime_UTR	26467443	26468058	.	+	.	Parent=Os11t0659400-00
Chr11	irgsp1_rep	mRNA	26466870	26467284	.	+	.	ID=Os11t0659450-00;Name=Os11t0659450-00;Locus_id=Os11g0659450;Note=Non-protein coding transcript.;Transcript_evidence=CU406921 (DDBJ%2C Secondary hit);ORF_evidence=NONE;TENOR=Os11t0659450-00
Chr11	irgsp1_rep	exon	26466870	26467284	.	+	.	Parent=Os11t0659450-00
Chr11	irgsp1_rep	mRNA	26468486	26473248	.	-	.	ID=Os11t0659500-01;Name=Os11t0659500-01;Locus_id=Os11g0659500;Note=Similar to Acyl-ACP thioesterase (Fragment).;Transcript_evidence=AK068543 (DDBJ%2C Best hit);ORF_evidence=A1YKG2 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Molecular Function: thiolester hydrolase activity (GO:0016790);InterPro=Acyl-ACP thioesterase (IPR002864),Acyl-ACP-thioesterase%2C N-terminal (IPR021113);NIAS_FLcDNA=J013157H03;Expression=AK068543;TENOR=Os11t0659500-01;KEGG=Os11t0659500-01
Chr11	irgsp1_rep	five_prime_UTR	26473112	26473248	.	-	.	Parent=Os11t0659500-01
Chr11	irgsp1_rep	five_prime_UTR	26472555	26472618	.	-	.	Parent=Os11t0659500-01
Chr11	irgsp1_rep	CDS	26472036	26472554	.	-	0	Parent=Os11t0659500-01
Chr11	irgsp1_rep	CDS	26471799	26471932	.	-	0	Parent=Os11t0659500-01
Chr11	irgsp1_rep	CDS	26469793	26469906	.	-	1	Parent=Os11t0659500-01
Chr11	irgsp1_rep	CDS	26469469	26469655	.	-	1	Parent=Os11t0659500-01
Chr11	irgsp1_rep	CDS	26469259	26469327	.	-	0	Parent=Os11t0659500-01
Chr11	irgsp1_rep	CDS	26468781	26469035	.	-	0	Parent=Os11t0659500-01
Chr11	irgsp1_rep	three_prime_UTR	26468486	26468780	.	-	.	Parent=Os11t0659500-01
Chr11	irgsp1_rep	mRNA	26475503	26478045	.	-	.	ID=Os11t0659600-01;Name=Os11t0659600-01;Locus_id=Os11g0659600;CGSNL Gene Symbol=PME32;CGSNL Gene Name=PECTIN METHYLESTERASE 32;Oryzabase Gene Symbol Synonym(s)=OsPME32%2C OsSTA270;Oryzabase Gene Name Synonym(s)=pectin methylesterase 32;Note=Pectinesterase%2C catalytic domain containing protein.;Transcript_evidence=AK107017 (DDBJ%2C Best hit);ORF_evidence=A3CDM1 (UniProt);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=002-120-H02;Oryzabase=13196;Expression=AK107017;TENOR=Os11t0659600-01;KEGG=Os11t0659600-01
Chr11	irgsp1_rep	five_prime_UTR	26477973	26478045	.	-	.	Parent=Os11t0659600-01
Chr11	irgsp1_rep	CDS	26477457	26477972	.	-	0	Parent=Os11t0659600-01
Chr11	irgsp1_rep	CDS	26476327	26476731	.	-	0	Parent=Os11t0659600-01
Chr11	irgsp1_rep	three_prime_UTR	26476258	26476326	.	-	.	Parent=Os11t0659600-01
Chr11	irgsp1_rep	three_prime_UTR	26475503	26475787	.	-	.	Parent=Os11t0659600-01
Chr11	irgsp1_rep	mRNA	26479839	26482885	.	-	.	ID=Os11t0659700-00;Name=Os11t0659700-00;Locus_id=Os11g0659700;Note=Similar to Pectinesterase family protein.;Transcript_evidence=BT037782 (DDBJ);ORF_evidence=Q2R042 (UniProt);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);TENOR=Os11t0659700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	26482358	26482885	.	-	0	Parent=Os11t0659700-00
Chr11	irgsp1_rep	CDS	26481749	26481940	.	-	0	Parent=Os11t0659700-00
Chr11	irgsp1_rep	CDS	26481432	26481690	.	-	0	Parent=Os11t0659700-00
Chr11	irgsp1_rep	CDS	26479839	26480047	.	-	2	Parent=Os11t0659700-00
Chr11	irgsp1_rep	mRNA	26488399	26492363	.	-	.	ID=Os11t0660000-01;Name=Os11t0660000-01;Locus_id=Os11g0660000;Oryzabase Gene Symbol Synonym(s)=OsMHX%2C OsMHX2%2C MHX2%2C OsNCX14%2C OsNCX14.1%2C OsNCX14.2%2C NCX14%2C OsMHX1%2C MHX1;Oryzabase Gene Name Synonym(s)=Mg2+/H+ exchanger%2C magnesium/hydrogen exchanger%2C Na+/Ca2+ Exchanger 14%2C Sodium/calcium exchanger 14;Note=Sodium/calcium exchanger membrane region domain containing protein.;Transcript_evidence=AK066709 (DDBJ%2C Best hit);ORF_evidence=XP_002321003.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Sodium/calcium exchanger membrane region (IPR004837);NIAS_FLcDNA=J013074O18;Oryzabase=11560;Expression=AK066709;TENOR=Os11t0660000-01;KEGG=Os11t0660000-01
Chr11	irgsp1_rep	five_prime_UTR	26492254	26492363	.	-	.	Parent=Os11t0660000-01
Chr11	irgsp1_rep	five_prime_UTR	26491419	26491476	.	-	.	Parent=Os11t0660000-01
Chr11	irgsp1_rep	CDS	26491058	26491418	.	-	0	Parent=Os11t0660000-01
Chr11	irgsp1_rep	CDS	26490802	26490977	.	-	2	Parent=Os11t0660000-01
Chr11	irgsp1_rep	CDS	26490598	26490716	.	-	0	Parent=Os11t0660000-01
Chr11	irgsp1_rep	CDS	26490337	26490485	.	-	1	Parent=Os11t0660000-01
Chr11	irgsp1_rep	CDS	26490112	26490233	.	-	2	Parent=Os11t0660000-01
Chr11	irgsp1_rep	CDS	26489252	26489468	.	-	0	Parent=Os11t0660000-01
Chr11	irgsp1_rep	CDS	26489032	26489161	.	-	2	Parent=Os11t0660000-01
Chr11	irgsp1_rep	CDS	26488627	26488924	.	-	1	Parent=Os11t0660000-01
Chr11	irgsp1_rep	three_prime_UTR	26488399	26488626	.	-	.	Parent=Os11t0660000-01
Chr11	irgsp1_rep	mRNA	26501646	26504211	.	+	.	ID=Os11t0660300-01;Name=Os11t0660300-01;Locus_id=Os11g0660300;CGSNL Gene Symbol=RBP10;CGSNL Gene Name=RNA-BINDING PROTEIN 10;Oryzabase Gene Symbol Synonym(s)=OsRBP10%2C RBP-10%2C OsRBP-10;Oryzabase Gene Name Synonym(s)=RNA-Binding Protein 10;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK109657 (DDBJ%2C Best hit);ORF_evidence=A4GZL2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);NIAS_FLcDNA=002-140-F06;Oryzabase=22719;Expression=AK109657;TENOR=Os11t0660300-01;KEGG=Os11t0660300-01
Chr11	irgsp1_rep	five_prime_UTR	26501646	26501754	.	+	.	Parent=Os11t0660300-01
Chr11	irgsp1_rep	CDS	26501755	26502102	.	+	0	Parent=Os11t0660300-01
Chr11	irgsp1_rep	CDS	26503464	26504087	.	+	0	Parent=Os11t0660300-01
Chr11	irgsp1_rep	three_prime_UTR	26504088	26504211	.	+	.	Parent=Os11t0660300-01
Chr11	irgsp1_rep	mRNA	26503050	26507799	.	-	.	ID=Os11t0660400-01;Name=Os11t0660400-01;Locus_id=Os11g0660400;Oryzabase Gene Symbol Synonym(s)=OsWD40-191;Note=Hypothetical protein.;Transcript_evidence=AK101516 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033046G03;Oryzabase=10872;TENOR=Os11t0660400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	26507410	26507799	.	-	0	Parent=Os11t0660400-01
Chr11	irgsp1_rep	three_prime_UTR	26506171	26507409	.	-	.	Parent=Os11t0660400-01
Chr11	irgsp1_rep	three_prime_UTR	26505861	26505921	.	-	.	Parent=Os11t0660400-01
Chr11	irgsp1_rep	three_prime_UTR	26505429	26505700	.	-	.	Parent=Os11t0660400-01
Chr11	irgsp1_rep	three_prime_UTR	26503050	26505297	.	-	.	Parent=Os11t0660400-01
Chr11	irgsp1_rep	mRNA	26505492	26507791	.	-	.	ID=Os11t0660400-02;Name=Os11t0660400-02;Locus_id=Os11g0660400;Oryzabase Gene Symbol Synonym(s)=OsWD40-191;Note=Similar to Plasma membrane H+-ATPase.;Transcript_evidence=AK068481 (DDBJ%2C Best hit);ORF_evidence=Q8RW26 (UniProt);NIAS_FLcDNA=J013152M13;Oryzabase=10872;TENOR=Os11t0660400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	26507509	26507791	.	-	.	Parent=Os11t0660400-02
Chr11	irgsp1_rep	five_prime_UTR	26506452	26507415	.	-	.	Parent=Os11t0660400-02
Chr11	irgsp1_rep	CDS	26506171	26506451	.	-	0	Parent=Os11t0660400-02
Chr11	irgsp1_rep	CDS	26505861	26505921	.	-	1	Parent=Os11t0660400-02
Chr11	irgsp1_rep	CDS	26505492	26505700	.	-	0	Parent=Os11t0660400-02
Chr11	irgsp1_rep	mRNA	26510873	26513127	.	-	.	ID=Os11t0660500-01;Name=Os11t0660500-01;Locus_id=Os11g0660500;RAP-DB Gene Symbol Synonym(s)=TCTP%2C OsTCTP%2C OsTCTPa;RAP-DB Gene Name Synonym(s)=21 kDa polypeptide%2C translationally controlled tumor protein%2C TCTP homolog;Oryzabase Gene Symbol Synonym(s)=OsTCTP%2C TCTP%2C OsTCTPa%2C OsTCTPb%2C TPH;Oryzabase Gene Name Synonym(s)=21 kDa polypeptide%2C translationally controlled tumor protein%2C TCTP homolog%2C Tumor protein homolog;Note=Translationally controlled tumor protein%2C Mercury tolerance;Transcript_evidence=D12626 (Yamahousi),AK105453;ORF_evidence=P35681;InterPro=Translationally controlled tumour protein (IPR018105),Mss4-like (IPR011057),Mss4/translationally controlled tumour-associated TCTP (IPR011323),Translationally controlled tumour protein%2C conserved site (IPR018103);NIAS_FLcDNA=001-125-C05;Manual Curation=May 29%2C 2015;Literature_PMID=25990386;Oryzabase=15738;Expression=AK105453;TENOR=Os11t0660500-01;KEGG=Os11t0660500-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	26513016	26513127	.	-	.	Parent=Os11t0660500-01
Chr11	irgsp1_rep	CDS	26512988	26513015	.	-	0	Parent=Os11t0660500-01
Chr11	irgsp1_rep	CDS	26512596	26512669	.	-	2	Parent=Os11t0660500-01
Chr11	irgsp1_rep	CDS	26511777	26511905	.	-	0	Parent=Os11t0660500-01
Chr11	irgsp1_rep	CDS	26511532	26511689	.	-	0	Parent=Os11t0660500-01
Chr11	irgsp1_rep	CDS	26511224	26511341	.	-	1	Parent=Os11t0660500-01
Chr11	irgsp1_rep	three_prime_UTR	26510873	26511223	.	-	.	Parent=Os11t0660500-01
Chr11	irgsp1_rep	mRNA	26510873	26513127	.	-	.	ID=Os11t0660500-02;Name=Os11t0660500-02;Locus_id=Os11g0660500;RAP-DB Gene Symbol Synonym(s)=OsTCTP%2C OsTCTPb%2C TCTP;RAP-DB Gene Name Synonym(s)=translationally controlled tumor protein;Oryzabase Gene Symbol Synonym(s)=OsTCTP%2C TCTP%2C OsTCTPa%2C OsTCTPb%2C TPH;Oryzabase Gene Name Synonym(s)=21 kDa polypeptide%2C translationally controlled tumor protein%2C TCTP homolog%2C Tumor protein homolog;Note=Splicing variant of OsTCTPa;Transcript_evidence=Inferred from literature;ORF_evidence=NONE;Manual Curation=June 10%2C 2015;Literature_PMID=25990386;Oryzabase=15738;Comment=No protein was detected by experiments
Chr11	irgsp1_rep	exon	26512988	26513127	.	-	.	Parent=Os11t0660500-02
Chr11	irgsp1_rep	exon	26512596	26512669	.	-	.	Parent=Os11t0660500-02
Chr11	irgsp1_rep	exon	26511777	26511905	.	-	.	Parent=Os11t0660500-02
Chr11	irgsp1_rep	exon	26510873	26511689	.	-	.	Parent=Os11t0660500-02
Chr11	irgsp1_rep	mRNA	26517361	26518059	.	-	.	ID=Os11t0660700-01;Name=Os11t0660700-01;Locus_id=Os11g0660700;Note=Conserved hypothetical protein.;Transcript_evidence=AK063723 (DDBJ%2C Best hit);ORF_evidence=B8BLP5 (UniProt);NIAS_FLcDNA=001-120-D06;TENOR=Os11t0660700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	26518059	26518059	.	-	.	Parent=Os11t0660700-01
Chr11	irgsp1_rep	CDS	26517519	26518058	.	-	0	Parent=Os11t0660700-01
Chr11	irgsp1_rep	three_prime_UTR	26517361	26517518	.	-	.	Parent=Os11t0660700-01
Chr11	irgsp1_rep	mRNA	26527937	26531006	.	-	.	ID=Os11t0661000-01;Name=Os11t0661000-01;Locus_id=Os11g0661000;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK071786 (DDBJ%2C Best hit);ORF_evidence=B8BLP6 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J023107P22;Expression=AK071786;TENOR=Os11t0661000-01;KEGG=Os11t0661000-01
Chr11	irgsp1_rep	five_prime_UTR	26531005	26531006	.	-	.	Parent=Os11t0661000-01
Chr11	irgsp1_rep	CDS	26530845	26531004	.	-	0	Parent=Os11t0661000-01
Chr11	irgsp1_rep	CDS	26528006	26529924	.	-	2	Parent=Os11t0661000-01
Chr11	irgsp1_rep	three_prime_UTR	26527937	26528005	.	-	.	Parent=Os11t0661000-01
Chr11	irgsp1_rep	mRNA	26524929	26530974	.	-	.	ID=Os11t0661000-02;Name=Os11t0661000-02;Locus_id=Os11g0661000;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK066047 (DDBJ%2C Best hit);ORF_evidence=B8BLP6 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013049C10;Expression=AK066047;TENOR=Os11t0661000-02;KEGG=Os11t0661000-02
Chr11	irgsp1_rep	five_prime_UTR	26530721	26530974	.	-	.	Parent=Os11t0661000-02
Chr11	irgsp1_rep	five_prime_UTR	26529839	26529924	.	-	.	Parent=Os11t0661000-02
Chr11	irgsp1_rep	CDS	26528006	26529838	.	-	0	Parent=Os11t0661000-02
Chr11	irgsp1_rep	three_prime_UTR	26527959	26528005	.	-	.	Parent=Os11t0661000-02
Chr11	irgsp1_rep	three_prime_UTR	26527295	26527419	.	-	.	Parent=Os11t0661000-02
Chr11	irgsp1_rep	three_prime_UTR	26527174	26527224	.	-	.	Parent=Os11t0661000-02
Chr11	irgsp1_rep	three_prime_UTR	26524929	26526875	.	-	.	Parent=Os11t0661000-02
Chr11	irgsp1_rep	mRNA	26524975	26525430	.	-	.	ID=Os11t0661000-03;Name=Os11t0661000-03;Locus_id=Os11g0661000;Note=Non-protein coding transcript.;Transcript_evidence=AK063050 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-110-E04;TENOR=Os11t0661000-03
Chr11	irgsp1_rep	exon	26524975	26525430	.	-	.	Parent=Os11t0661000-03
Chr11	irgsp1_rep	mRNA	26533899	26537138	.	-	.	ID=Os11t0661101-01;Name=Os11t0661101-01;Locus_id=Os11g0661101;Note=Conserved hypothetical protein.;Transcript_evidence=AK287691 (DDBJ%2C Best hit);ORF_evidence=Q68UR4 (UniProt);NIAS_FLcDNA=J065128F02;TENOR=Os11t0661101-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	26536919	26537138	.	-	.	Parent=Os11t0661101-01
Chr11	irgsp1_rep	CDS	26536778	26536918	.	-	0	Parent=Os11t0661101-01
Chr11	irgsp1_rep	three_prime_UTR	26535554	26536777	.	-	.	Parent=Os11t0661101-01
Chr11	irgsp1_rep	three_prime_UTR	26535330	26535413	.	-	.	Parent=Os11t0661101-01
Chr11	irgsp1_rep	three_prime_UTR	26533899	26534766	.	-	.	Parent=Os11t0661101-01
Chr11	irgsp1_rep	mRNA	26542837	26549299	.	+	.	ID=Os11t0661200-01;Name=Os11t0661200-01;Locus_id=Os11g0661200;Oryzabase Gene Symbol Synonym(s)=OsDjC78;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C78;Note=Heat shock protein DnaJ%2C N-terminal domain containing protein.;Transcript_evidence=AK069534 (DDBJ%2C Best hit);ORF_evidence=Q2R031 (UniProt);GO=Molecular Function: heat shock protein binding (GO:0031072);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623);NIAS_FLcDNA=J023021N21;Oryzabase=12235;TENOR=Os11t0661200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	26542837	26543023	.	+	.	Parent=Os11t0661200-01
Chr11	irgsp1_rep	CDS	26543024	26543694	.	+	0	Parent=Os11t0661200-01
Chr11	irgsp1_rep	CDS	26544689	26546078	.	+	1	Parent=Os11t0661200-01
Chr11	irgsp1_rep	CDS	26546165	26546300	.	+	0	Parent=Os11t0661200-01
Chr11	irgsp1_rep	CDS	26546402	26546499	.	+	2	Parent=Os11t0661200-01
Chr11	irgsp1_rep	CDS	26546687	26546752	.	+	0	Parent=Os11t0661200-01
Chr11	irgsp1_rep	CDS	26546955	26547044	.	+	0	Parent=Os11t0661200-01
Chr11	irgsp1_rep	CDS	26547787	26547963	.	+	0	Parent=Os11t0661200-01
Chr11	irgsp1_rep	CDS	26548793	26548831	.	+	0	Parent=Os11t0661200-01
Chr11	irgsp1_rep	three_prime_UTR	26548832	26549299	.	+	.	Parent=Os11t0661200-01
Chr11	irgsp1_rep	mRNA	26549883	26552469	.	+	.	ID=Os11t0661300-01;Name=Os11t0661300-01;Locus_id=Os11g0661300;RAP-DB Gene Symbol Synonym(s)=ER-ANT1;RAP-DB Gene Name Synonym(s)=endoplasmic reticulum-localized adenine nucleotide transporter1;CGSNL Gene Symbol=ERANT1;CGSNL Gene Name=ENDOPLASMIC RETICULUM-LOCALIZED ADENINE NUCLEOTIDE TRANSPORTER 1;Oryzabase Gene Symbol Synonym(s)=ER-ANT1;Oryzabase Gene Name Synonym(s)=endoplasmic reticulum-localized adenine nucleotide transporter1%2C endoplasmic reticulum-localized adenine nucleotide transporter 1;Note=ER-localized adenine nucleotide transporter%2C Convergence of energy and stress signals;Transcript_evidence=AK064725;ORF_evidence=Q2R030;GO=Biological Process: transmembrane transport (GO:0055085),Molecular Function: transmembrane transporter activity (GO:0022857),Cellular Component: mitochondrial inner membrane (GO:0005743);InterPro=Mitochondrial carrier domain superfamily (IPR023395),Mitochondrial carrier protein (IPR002067),Adenine nucleotide translocator 1 (IPR002113),Mitochondrial substrate/solute carrier (IPR018108);NIAS_FLcDNA=002-118-G12;Manual Curation=May 1%2C 2020;Literature_PMID=27614468;Oryzabase=21918;Expression=AK064725;TENOR=Os11t0661300-01;KEGG=Os11t0661300-01;Subcellular location=endoplasmic reticulum (GO:0005783)
Chr11	irgsp1_rep	five_prime_UTR	26549883	26549972	.	+	.	Parent=Os11t0661300-01
Chr11	irgsp1_rep	CDS	26549973	26550278	.	+	0	Parent=Os11t0661300-01
Chr11	irgsp1_rep	CDS	26551178	26551546	.	+	0	Parent=Os11t0661300-01
Chr11	irgsp1_rep	CDS	26551636	26551950	.	+	0	Parent=Os11t0661300-01
Chr11	irgsp1_rep	three_prime_UTR	26551951	26552469	.	+	.	Parent=Os11t0661300-01
Chr11	irgsp1_rep	mRNA	26551319	26551547	.	-	.	ID=Os11t0661350-00;Name=Os11t0661350-00;Locus_id=Os11g0661350;Note=Non-protein coding transcript.;Transcript_evidence=BT086700 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0661350-00
Chr11	irgsp1_rep	exon	26551319	26551547	.	-	.	Parent=Os11t0661350-00
Chr11	irgsp1_rep	mRNA	26552934	26554756	.	-	.	ID=Os11t0661400-01;Name=Os11t0661400-01;Locus_id=Os11g0661400;Note=ATPase%2C AAA-type%2C core domain containing protein.;Transcript_evidence=AK063910 (DDBJ%2C Best hit);ORF_evidence=XP_002872834.1 (RefSeq);GO=Molecular Function: ATP binding (GO:0005524);InterPro=ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);NIAS_FLcDNA=001-123-A05;Expression=AK063910;TENOR=Os11t0661400-01;KEGG=Os11t0661400-01
Chr11	irgsp1_rep	five_prime_UTR	26554755	26554756	.	-	.	Parent=Os11t0661400-01
Chr11	irgsp1_rep	CDS	26554716	26554754	.	-	0	Parent=Os11t0661400-01
Chr11	irgsp1_rep	CDS	26554545	26554628	.	-	0	Parent=Os11t0661400-01
Chr11	irgsp1_rep	CDS	26554273	26554457	.	-	0	Parent=Os11t0661400-01
Chr11	irgsp1_rep	CDS	26554044	26554182	.	-	1	Parent=Os11t0661400-01
Chr11	irgsp1_rep	CDS	26553898	26553957	.	-	0	Parent=Os11t0661400-01
Chr11	irgsp1_rep	CDS	26553624	26553728	.	-	0	Parent=Os11t0661400-01
Chr11	irgsp1_rep	CDS	26553433	26553546	.	-	0	Parent=Os11t0661400-01
Chr11	irgsp1_rep	three_prime_UTR	26552934	26553432	.	-	.	Parent=Os11t0661400-01
Chr11	irgsp1_rep	mRNA	26572255	26574116	.	+	.	ID=Os11t0661600-01;Name=Os11t0661600-01;Locus_id=Os11g0661600;Oryzabase Gene Symbol Synonym(s)=prx134;Oryzabase Gene Name Synonym(s)=class III peroxidase 134;Note=Similar to Peroxidase (EC 1.11.1.7).;Transcript_evidence=AK108713 (DDBJ%2C Best hit);ORF_evidence=Q5U1J6 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=002-150-B05;Oryzabase=14649;Expression=AK108713;TENOR=Os11t0661600-01;KEGG=Os11t0661600-01 (EC:1.11.1.7)
Chr11	irgsp1_rep	five_prime_UTR	26572255	26572349	.	+	.	Parent=Os11t0661600-01
Chr11	irgsp1_rep	CDS	26572350	26572577	.	+	0	Parent=Os11t0661600-01
Chr11	irgsp1_rep	CDS	26573094	26573873	.	+	0	Parent=Os11t0661600-01
Chr11	irgsp1_rep	three_prime_UTR	26573874	26574116	.	+	.	Parent=Os11t0661600-01
Chr11	irgsp1_rep	mRNA	26572401	26573275	.	-	.	ID=Os11t0661700-00;Name=Os11t0661700-00;Locus_id=Os11g0661700;Note=Hypothetical protein.;Transcript_evidence=BT085962 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0661700-00
Chr11	irgsp1_rep	five_prime_UTR	26573261	26573275	.	-	.	Parent=Os11t0661700-00
Chr11	irgsp1_rep	CDS	26573072	26573260	.	-	0	Parent=Os11t0661700-00
Chr11	irgsp1_rep	CDS	26572401	26572661	.	-	0	Parent=Os11t0661700-00
Chr11	irgsp1_rep	mRNA	26577121	26582071	.	-	.	ID=Os11t0661800-01;Name=Os11t0661800-01;Locus_id=Os11g0661800;Note=Concanavalin A-like lectin/glucanase domain containing protein.;Transcript_evidence=AK107024 (DDBJ%2C Best hit);ORF_evidence=B9G8R0 (UniProt);NIAS_FLcDNA=002-121-A04;Expression=AK107024;TENOR=Os11t0661800-01;KEGG=Os11t0661800-01
Chr11	irgsp1_rep	CDS	26581622	26582071	.	-	0	Parent=Os11t0661800-01
Chr11	irgsp1_rep	CDS	26580905	26581513	.	-	0	Parent=Os11t0661800-01
Chr11	irgsp1_rep	CDS	26577602	26577829	.	-	0	Parent=Os11t0661800-01
Chr11	irgsp1_rep	three_prime_UTR	26577121	26577601	.	-	.	Parent=Os11t0661800-01
Chr11	irgsp1_rep	mRNA	26579230	26580721	.	+	.	ID=Os11t0661900-01;Name=Os11t0661900-01;Locus_id=Os11g0661900;Note=Conserved hypothetical protein.;Transcript_evidence=AK064062 (DDBJ%2C Best hit);ORF_evidence=Q6ETF2 (UniProt);NIAS_FLcDNA=001-125-F12;Expression=AK064062;TENOR=Os11t0661900-01;KEGG=Os11t0661900-01
Chr11	irgsp1_rep	five_prime_UTR	26579230	26579395	.	+	.	Parent=Os11t0661900-01
Chr11	irgsp1_rep	CDS	26579396	26579887	.	+	0	Parent=Os11t0661900-01
Chr11	irgsp1_rep	three_prime_UTR	26579888	26580721	.	+	.	Parent=Os11t0661900-01
Chr11	irgsp1_rep	mRNA	26587247	26588684	.	-	.	ID=Os11t0662100-00;Name=Os11t0662100-00;Locus_id=Os11g0662100;Note=Hypothetical conserved gene.;Transcript_evidence=CT836139 (DDBJ%2C Secondary hit);ORF_evidence=B8B532 (UniProt);TENOR=Os11t0662100-00;KEGG=Os11t0662100-00
Chr11	irgsp1_rep	five_prime_UTR	26588683	26588684	.	-	.	Parent=Os11t0662100-00
Chr11	irgsp1_rep	CDS	26588615	26588682	.	-	0	Parent=Os11t0662100-00
Chr11	irgsp1_rep	CDS	26588406	26588537	.	-	1	Parent=Os11t0662100-00
Chr11	irgsp1_rep	CDS	26588191	26588275	.	-	1	Parent=Os11t0662100-00
Chr11	irgsp1_rep	CDS	26587543	26587551	.	-	0	Parent=Os11t0662100-00
Chr11	irgsp1_rep	three_prime_UTR	26587247	26587542	.	-	.	Parent=Os11t0662100-00
Chr11	irgsp1_rep	mRNA	26661960	26662184	.	+	.	ID=Os11t0662950-00;Name=Os11t0662950-00;Locus_id=Os11g0662950;Note=Hypothetical gene.;Transcript_evidence=BT087019 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0662950-00;KEGG=Os11t0662950-00
Chr11	irgsp1_rep	CDS	26661960	26662184	.	+	0	Parent=Os11t0662950-00
Chr11	irgsp1_rep	mRNA	26682547	26684867	.	-	.	ID=Os11t0663100-00;Name=Os11t0663100-00;Locus_id=Os11g0663100;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R009 (UniProt);InterPro=Calmodulin binding protein-like (IPR012416);TENOR=Os11t0663100-00;KEGG=Os11t0663100-00
Chr11	irgsp1_rep	CDS	26684381	26684867	.	-	0	Parent=Os11t0663100-00
Chr11	irgsp1_rep	CDS	26683869	26684029	.	-	2	Parent=Os11t0663100-00
Chr11	irgsp1_rep	CDS	26683587	26683776	.	-	0	Parent=Os11t0663100-00
Chr11	irgsp1_rep	CDS	26683331	26683459	.	-	2	Parent=Os11t0663100-00
Chr11	irgsp1_rep	CDS	26683098	26683250	.	-	2	Parent=Os11t0663100-00
Chr11	irgsp1_rep	CDS	26682547	26683004	.	-	2	Parent=Os11t0663100-00
Chr11	irgsp1_rep	mRNA	26738642	26739778	.	+	.	ID=Os11t0663900-00;Name=Os11t0663900-00;Locus_id=Os11g0663900;Note=Similar to Protein kinase domain containing protein.;Transcript_evidence=EU955852 (DDBJ);ORF_evidence=Q2R001 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os11t0663900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	26738642	26738860	.	+	.	Parent=Os11t0663900-00
Chr11	irgsp1_rep	five_prime_UTR	26738916	26738944	.	+	.	Parent=Os11t0663900-00
Chr11	irgsp1_rep	CDS	26738945	26739358	.	+	0	Parent=Os11t0663900-00
Chr11	irgsp1_rep	CDS	26739533	26739778	.	+	0	Parent=Os11t0663900-00
Chr11	irgsp1_rep	mRNA	26741921	26743907	.	+	.	ID=Os11t0664000-01;Name=Os11t0664000-01;Locus_id=Os11g0664000;CGSNL Gene Symbol=RLCK343;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 343;Oryzabase Gene Symbol Synonym(s)=OsRLCK343;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 343;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK242558 (DDBJ%2C Best hit);ORF_evidence=Q2R001 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J090001F19;Oryzabase=19013;TENOR=Os11t0664000-01;KEGG=Os11t0664000-01 (EC:2.7.11.1)
Chr11	irgsp1_rep	five_prime_UTR	26741921	26742023	.	+	.	Parent=Os11t0664000-01
Chr11	irgsp1_rep	CDS	26742024	26742524	.	+	0	Parent=Os11t0664000-01
Chr11	irgsp1_rep	CDS	26742663	26743793	.	+	0	Parent=Os11t0664000-01
Chr11	irgsp1_rep	three_prime_UTR	26743794	26743907	.	+	.	Parent=Os11t0664000-01
Chr11	irgsp1_rep	mRNA	26751240	26752365	.	+	.	ID=Os11t0664100-00;Name=Os11t0664100-00;Locus_id=Os11g0664100;CGSNL Gene Symbol=RLCK344;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 344;Oryzabase Gene Symbol Synonym(s)=OsRLCK344;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 344;Note=Similar to Protein kinase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R000 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=19014;TENOR=Os11t0664100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	26751240	26751420	.	+	0	Parent=Os11t0664100-00
Chr11	irgsp1_rep	CDS	26751599	26752365	.	+	2	Parent=Os11t0664100-00
Chr11	irgsp1_rep	mRNA	26750585	26751099	.	+	.	ID=Os11t0664133-00;Name=Os11t0664133-00;Locus_id=Os11g0664133;CGSNL Gene Symbol=RLCK344;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 344;Oryzabase Gene Symbol Synonym(s)=OsRLCK344;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 344;Note=Similar to Protein kinase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R001 (UniProt);Oryzabase=19014;TENOR=Os11t0664133-00
Chr11	irgsp1_rep	CDS	26750585	26750883	.	+	0	Parent=Os11t0664133-00
Chr11	irgsp1_rep	CDS	26750895	26751099	.	+	1	Parent=Os11t0664133-00
Chr11	irgsp1_rep	mRNA	26774246	26775075	.	-	.	ID=Os11t0664400-00;Name=Os11t0664400-00;Locus_id=Os11g0664400;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QZZ6 (UniProt);TENOR=Os11t0664400-00;KEGG=Os11t0664400-00
Chr11	irgsp1_rep	CDS	26774590	26775075	.	-	0	Parent=Os11t0664400-00
Chr11	irgsp1_rep	CDS	26774246	26774482	.	-	0	Parent=Os11t0664400-00
Chr11	irgsp1_rep	mRNA	26777816	26783973	.	+	.	ID=Os11t0664500-01;Name=Os11t0664500-01;Locus_id=Os11g0664500;Note=Hypothetical conserved gene.;Transcript_evidence=AK242920 (DDBJ%2C Best hit);ORF_evidence=B9G8R4 (UniProt);InterPro=Calmodulin binding protein-like (IPR012416);NIAS_FLcDNA=J090084M12;TENOR=Os11t0664500-01;KEGG=Os11t0664500-01
Chr11	irgsp1_rep	five_prime_UTR	26777816	26778256	.	+	.	Parent=Os11t0664500-01
Chr11	irgsp1_rep	five_prime_UTR	26779403	26779406	.	+	.	Parent=Os11t0664500-01
Chr11	irgsp1_rep	CDS	26779407	26779517	.	+	0	Parent=Os11t0664500-01
Chr11	irgsp1_rep	CDS	26779893	26779939	.	+	0	Parent=Os11t0664500-01
Chr11	irgsp1_rep	CDS	26781122	26781600	.	+	1	Parent=Os11t0664500-01
Chr11	irgsp1_rep	CDS	26782334	26782494	.	+	2	Parent=Os11t0664500-01
Chr11	irgsp1_rep	CDS	26782569	26782764	.	+	0	Parent=Os11t0664500-01
Chr11	irgsp1_rep	CDS	26782915	26783052	.	+	2	Parent=Os11t0664500-01
Chr11	irgsp1_rep	CDS	26783143	26783292	.	+	2	Parent=Os11t0664500-01
Chr11	irgsp1_rep	CDS	26783393	26783739	.	+	2	Parent=Os11t0664500-01
Chr11	irgsp1_rep	three_prime_UTR	26783740	26783973	.	+	.	Parent=Os11t0664500-01
Chr11	irgsp1_rep	mRNA	26794437	26799952	.	+	.	ID=Os11t0664800-00;Name=Os11t0664800-00;Locus_id=Os11g0664800;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G8R6 (UniProt);InterPro=Calmodulin binding protein-like (IPR012416);TENOR=Os11t0664800-00;KEGG=Os11t0664800-00
Chr11	irgsp1_rep	CDS	26794437	26794534	.	+	0	Parent=Os11t0664800-00
Chr11	irgsp1_rep	CDS	26795775	26795904	.	+	1	Parent=Os11t0664800-00
Chr11	irgsp1_rep	CDS	26796493	26796539	.	+	0	Parent=Os11t0664800-00
Chr11	irgsp1_rep	CDS	26797700	26797998	.	+	1	Parent=Os11t0664800-00
Chr11	irgsp1_rep	CDS	26798324	26798484	.	+	2	Parent=Os11t0664800-00
Chr11	irgsp1_rep	CDS	26798617	26798812	.	+	0	Parent=Os11t0664800-00
Chr11	irgsp1_rep	CDS	26799163	26799315	.	+	2	Parent=Os11t0664800-00
Chr11	irgsp1_rep	CDS	26799405	26799952	.	+	2	Parent=Os11t0664800-00
Chr11	irgsp1_rep	mRNA	26831964	26832713	.	-	.	ID=Os11t0665600-00;Name=Os11t0665600-00;Locus_id=Os11g0665600;Note=Helix-turn-helix%2C Fis-type domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QZY8 (UniProt);TENOR=Os11t0665600-00;KEGG=Os11t0665600-00
Chr11	irgsp1_rep	CDS	26832261	26832713	.	-	0	Parent=Os11t0665600-00
Chr11	irgsp1_rep	CDS	26831964	26832176	.	-	0	Parent=Os11t0665600-00
Chr11	irgsp1_rep	mRNA	26873372	26873913	.	-	.	ID=Os11t0665950-01;Name=Os11t0665950-01;Locus_id=Os11g0665950;Note=Similar to Protein kinase domain containing protein.;Transcript_evidence=AK241814 (DDBJ%2C Best hit);ORF_evidence=Q2R001 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J065210P21;TENOR=Os11t0665950-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	26873455	26873913	.	-	0	Parent=Os11t0665950-01
Chr11	irgsp1_rep	three_prime_UTR	26873372	26873454	.	-	.	Parent=Os11t0665950-01
Chr11	irgsp1_rep	mRNA	26874673	26875103	.	+	.	ID=Os11t0666000-01;Name=Os11t0666000-01;Locus_id=Os11g0666000;Note=Hypothetical gene.;Transcript_evidence=AK105379 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=001-120-G05;Expression=AK105379;TENOR=Os11t0666000-01;KEGG=Os11t0666000-01
Chr11	irgsp1_rep	five_prime_UTR	26874673	26874780	.	+	.	Parent=Os11t0666000-01
Chr11	irgsp1_rep	CDS	26874781	26875083	.	+	0	Parent=Os11t0666000-01
Chr11	irgsp1_rep	three_prime_UTR	26875084	26875103	.	+	.	Parent=Os11t0666000-01
Chr11	irgsp1_rep	mRNA	26875368	26876085	.	-	.	ID=Os11t0666100-01;Name=Os11t0666100-01;Locus_id=Os11g0666100;Note=Similar to Receptor kinase-like protein.;Transcript_evidence=AK109326 (DDBJ%2C Best hit);ORF_evidence=Q2R001 (UniProt);NIAS_FLcDNA=002-188-H08;Expression=AK109326;TENOR=Os11t0666100-01;KEGG=Os11t0666100-01
Chr11	irgsp1_rep	CDS	26875426	26876085	.	-	0	Parent=Os11t0666100-01
Chr11	irgsp1_rep	three_prime_UTR	26875368	26875425	.	-	.	Parent=Os11t0666100-01
Chr11	irgsp1_rep	mRNA	26878083	26880047	.	-	.	ID=Os11t0666200-00;Name=Os11t0666200-00;Locus_id=Os11g0666200;CGSNL Gene Symbol=RLCK345;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 345;Oryzabase Gene Symbol Synonym(s)=OsRLCK345;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 345;Note=Similar to Protein kinase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2R001 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);Oryzabase=19015;TENOR=Os11t0666200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	26879547	26880047	.	-	0	Parent=Os11t0666200-00
Chr11	irgsp1_rep	CDS	26878083	26879195	.	-	0	Parent=Os11t0666200-00
Chr11	irgsp1_rep	mRNA	26881252	26882862	.	+	.	ID=Os11t0666300-00;Name=Os11t0666300-00;Locus_id=Os11g0666300;Note=Similar to Receptor kinase-like protein.;Transcript_evidence=AK365494 (DDBJ);ORF_evidence=Q84PD4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os11t0666300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	26881252	26881836	.	+	.	Parent=Os11t0666300-00
Chr11	irgsp1_rep	CDS	26881837	26882862	.	+	0	Parent=Os11t0666300-00
Chr11	irgsp1_rep	mRNA	26916494	26918387	.	+	.	ID=Os11t0667000-00;Name=Os11t0667000-00;Locus_id=Os11g0667000;CGSNL Gene Symbol=RLCK346;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 346;Oryzabase Gene Symbol Synonym(s)=OsRLCK346;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 346;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=AK335447 (DDBJ);ORF_evidence=Q2QZX6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);Oryzabase=19016;TENOR=Os11t0667000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	26916494	26917009	.	+	0	Parent=Os11t0667000-00
Chr11	irgsp1_rep	CDS	26917161	26918387	.	+	0	Parent=Os11t0667000-00
Chr11	irgsp1_rep	mRNA	26932459	26933110	.	+	.	ID=Os11t0667400-00;Name=Os11t0667400-00;Locus_id=Os11g0667400;CGSNL Gene Symbol=UBP4-7;CGSNL Gene Name=UBIQUITIN-SPECIFIC PROCESSING PROTEASE 4-7;Oryzabase Gene Symbol Synonym(s)=OsUBP4-7;Oryzabase Gene Name Synonym(s)=ubiquitin-specific processing protease 4-7;Note=Similar to Ubiquitin carboxyl-terminal hydrolase.;Transcript_evidence=ab initio prediction;ORF_evidence=B8B7E9 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Molecular Function: ubiquitin thiolesterase activity (GO:0004221);InterPro=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (IPR001394);Oryzabase=22882;TENOR=Os11t0667400-00;KEGG=Os11t0667400-00 (EC:3.1.2.15)
Chr11	irgsp1_rep	CDS	26932459	26932587	.	+	0	Parent=Os11t0667400-00
Chr11	irgsp1_rep	CDS	26932822	26932911	.	+	0	Parent=Os11t0667400-00
Chr11	irgsp1_rep	CDS	26933000	26933110	.	+	0	Parent=Os11t0667400-00
Chr11	irgsp1_rep	mRNA	26946159	26946885	.	+	.	ID=Os11t0667700-01;Name=Os11t0667700-01;Locus_id=Os11g0667700;CGSNL Gene Symbol=RLCK348;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 348;Oryzabase Gene Symbol Synonym(s)=OsRLCK348;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 348;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=AK105217 (DDBJ%2C Best hit);ORF_evidence=Q2QZX0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=001-110-C10;Oryzabase=19018;TENOR=Os11t0667700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	26946159	26946159	.	+	.	Parent=Os11t0667700-01
Chr11	irgsp1_rep	CDS	26946160	26946546	.	+	0	Parent=Os11t0667700-01
Chr11	irgsp1_rep	three_prime_UTR	26946547	26946885	.	+	.	Parent=Os11t0667700-01
Chr11	irgsp1_rep	mRNA	26953151	26960443	.	-	.	ID=Os11t0668100-00;Name=Os11t0668100-00;Locus_id=Os11g0668100;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=AK360543 (DDBJ);ORF_evidence=Q2QZW8 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182),ATPase%2C AAA+ type%2C core (IPR003593);TENOR=Os11t0668100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	26960101	26960443	.	-	.	Parent=Os11t0668100-00
Chr11	irgsp1_rep	CDS	26960026	26960100	.	-	0	Parent=Os11t0668100-00
Chr11	irgsp1_rep	CDS	26953151	26955580	.	-	0	Parent=Os11t0668100-00
Chr11	irgsp1_rep	mRNA	26967537	26977525	.	+	.	ID=Os11t0668300-00;Name=Os11t0668300-00;Locus_id=Os11g0668300;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QZW5 (UniProt);InterPro=Calmodulin binding protein-like (IPR012416);TENOR=Os11t0668300-00;KEGG=Os11t0668300-00
Chr11	irgsp1_rep	CDS	26967537	26967736	.	+	0	Parent=Os11t0668300-00
Chr11	irgsp1_rep	CDS	26967834	26967867	.	+	1	Parent=Os11t0668300-00
Chr11	irgsp1_rep	CDS	26973802	26973887	.	+	0	Parent=Os11t0668300-00
Chr11	irgsp1_rep	CDS	26973980	26974028	.	+	1	Parent=Os11t0668300-00
Chr11	irgsp1_rep	CDS	26974214	26974263	.	+	0	Parent=Os11t0668300-00
Chr11	irgsp1_rep	CDS	26974937	26975430	.	+	1	Parent=Os11t0668300-00
Chr11	irgsp1_rep	CDS	26975624	26975784	.	+	2	Parent=Os11t0668300-00
Chr11	irgsp1_rep	CDS	26976053	26976262	.	+	0	Parent=Os11t0668300-00
Chr11	irgsp1_rep	CDS	26976345	26976537	.	+	0	Parent=Os11t0668300-00
Chr11	irgsp1_rep	CDS	26976576	26976704	.	+	2	Parent=Os11t0668300-00
Chr11	irgsp1_rep	CDS	26976800	26976894	.	+	2	Parent=Os11t0668300-00
Chr11	irgsp1_rep	CDS	26977403	26977525	.	+	0	Parent=Os11t0668300-00
Chr11	irgsp1_rep	mRNA	26984222	26986477	.	-	.	ID=Os11t0668650-01;Name=Os11t0668650-01;Locus_id=Os11g0668650;Note=Calmodulin binding protein-like family protein.;Transcript_evidence=AK243171 (DDBJ%2C Best hit);ORF_evidence=NP_001068426.2 (RefSeq);InterPro=Calmodulin binding protein-like (IPR012416);NIAS_FLcDNA=J100035K11;TENOR=Os11t0668650-01;KEGG=Os11t0668650-01
Chr11	irgsp1_rep	five_prime_UTR	26986421	26986477	.	-	.	Parent=Os11t0668650-01
Chr11	irgsp1_rep	five_prime_UTR	26986260	26986319	.	-	.	Parent=Os11t0668650-01
Chr11	irgsp1_rep	five_prime_UTR	26985705	26985708	.	-	.	Parent=Os11t0668650-01
Chr11	irgsp1_rep	CDS	26985231	26985704	.	-	0	Parent=Os11t0668650-01
Chr11	irgsp1_rep	three_prime_UTR	26984222	26985230	.	-	.	Parent=Os11t0668650-01
Chr11	irgsp1_rep	mRNA	26999773	27005186	.	+	.	ID=Os11t0668700-01;Name=Os11t0668700-01;Locus_id=Os11g0668700;Note=Similar to OSIGBa0140A01.4 protein.;Transcript_evidence=AK289061 (DDBJ%2C Best hit);ORF_evidence=Q01KT5 (UniProt);NIAS_FLcDNA=J090093K14;TENOR=Os11t0668700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	26999773	26999866	.	+	.	Parent=Os11t0668700-01
Chr11	irgsp1_rep	CDS	26999867	27000061	.	+	0	Parent=Os11t0668700-01
Chr11	irgsp1_rep	three_prime_UTR	27000062	27005186	.	+	.	Parent=Os11t0668700-01
Chr11	irgsp1_rep	mRNA	27015358	27021340	.	+	.	ID=Os11t0669100-01;Name=Os11t0669100-01;Locus_id=Os11g0669100;Note=Calmodulin binding protein-like family protein.;Transcript_evidence=AK068628 (DDBJ%2C Best hit);ORF_evidence=A2WJW8 (UniProt);InterPro=Calmodulin binding protein-like (IPR012416);NIAS_FLcDNA=J013153G06;Expression=AK068628;TENOR=Os11t0669100-01;KEGG=Os11t0669100-01
Chr11	irgsp1_rep	five_prime_UTR	27015358	27015560	.	+	.	Parent=Os11t0669100-01
Chr11	irgsp1_rep	CDS	27015561	27015736	.	+	0	Parent=Os11t0669100-01
Chr11	irgsp1_rep	CDS	27016038	27016077	.	+	1	Parent=Os11t0669100-01
Chr11	irgsp1_rep	CDS	27016226	27016335	.	+	0	Parent=Os11t0669100-01
Chr11	irgsp1_rep	CDS	27017255	27017303	.	+	1	Parent=Os11t0669100-01
Chr11	irgsp1_rep	CDS	27017526	27017575	.	+	0	Parent=Os11t0669100-01
Chr11	irgsp1_rep	CDS	27017975	27018519	.	+	1	Parent=Os11t0669100-01
Chr11	irgsp1_rep	CDS	27018952	27019112	.	+	2	Parent=Os11t0669100-01
Chr11	irgsp1_rep	CDS	27019600	27019809	.	+	0	Parent=Os11t0669100-01
Chr11	irgsp1_rep	CDS	27019894	27020059	.	+	0	Parent=Os11t0669100-01
Chr11	irgsp1_rep	CDS	27020134	27020238	.	+	2	Parent=Os11t0669100-01
Chr11	irgsp1_rep	CDS	27020321	27020400	.	+	2	Parent=Os11t0669100-01
Chr11	irgsp1_rep	CDS	27020965	27021129	.	+	0	Parent=Os11t0669100-01
Chr11	irgsp1_rep	three_prime_UTR	27021130	27021340	.	+	.	Parent=Os11t0669100-01
Chr11	irgsp1_rep	mRNA	27024430	27027589	.	+	.	ID=Os11t0669200-00;Name=Os11t0669200-00;Locus_id=Os11g0669200;CGSNL Gene Symbol=RLCK350;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 350;Oryzabase Gene Symbol Synonym(s)=OsRLCK350;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 350;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QZV7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=19020;TENOR=Os11t0669200-00
Chr11	irgsp1_rep	CDS	27024430	27024771	.	+	0	Parent=Os11t0669200-00
Chr11	irgsp1_rep	CDS	27025143	27025201	.	+	0	Parent=Os11t0669200-00
Chr11	irgsp1_rep	CDS	27025351	27025427	.	+	1	Parent=Os11t0669200-00
Chr11	irgsp1_rep	CDS	27025753	27025878	.	+	2	Parent=Os11t0669200-00
Chr11	irgsp1_rep	CDS	27026012	27026109	.	+	2	Parent=Os11t0669200-00
Chr11	irgsp1_rep	CDS	27026268	27026478	.	+	0	Parent=Os11t0669200-00
Chr11	irgsp1_rep	CDS	27026602	27026842	.	+	2	Parent=Os11t0669200-00
Chr11	irgsp1_rep	CDS	27027094	27027259	.	+	1	Parent=Os11t0669200-00
Chr11	irgsp1_rep	CDS	27027371	27027589	.	+	0	Parent=Os11t0669200-00
Chr11	irgsp1_rep	mRNA	27077916	27080652	.	+	.	ID=Os11t0670100-00;Name=Os11t0670100-00;Locus_id=Os11g0670100;Note=Serine-threonine/tyrosine-protein kinase domain containing protein.;Transcript_evidence=EU955374 (DDBJ);ORF_evidence=B8B2S3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009);TENOR=Os11t0670100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	27077916	27078443	.	+	0	Parent=Os11t0670100-00
Chr11	irgsp1_rep	CDS	27080135	27080422	.	+	0	Parent=Os11t0670100-00
Chr11	irgsp1_rep	three_prime_UTR	27080423	27080652	.	+	.	Parent=Os11t0670100-00
Chr11	irgsp1_rep	mRNA	27090664	27107667	.	+	.	ID=Os11t0670700-00;Name=Os11t0670700-00;Locus_id=Os11g0670700;Note=Similar to EAP30 family protein.;Transcript_evidence=CT835662 (DDBJ%2C Best hit);ORF_evidence=A6MD19 (UniProt);InterPro=EAP30 (IPR007286),ESCRT-2 complex%2C Snf8 (IPR016689);TENOR=Os11t0670700-00;KEGG=Os11t0670700-00
Chr11	irgsp1_rep	five_prime_UTR	27090664	27090993	.	+	.	Parent=Os11t0670700-00
Chr11	irgsp1_rep	five_prime_UTR	27091140	27091158	.	+	.	Parent=Os11t0670700-00
Chr11	irgsp1_rep	CDS	27091159	27091209	.	+	0	Parent=Os11t0670700-00
Chr11	irgsp1_rep	CDS	27091299	27091409	.	+	0	Parent=Os11t0670700-00
Chr11	irgsp1_rep	CDS	27105860	27105995	.	+	0	Parent=Os11t0670700-00
Chr11	irgsp1_rep	CDS	27106103	27106255	.	+	2	Parent=Os11t0670700-00
Chr11	irgsp1_rep	CDS	27106402	27106511	.	+	2	Parent=Os11t0670700-00
Chr11	irgsp1_rep	CDS	27106817	27106906	.	+	0	Parent=Os11t0670700-00
Chr11	irgsp1_rep	CDS	27107178	27107285	.	+	0	Parent=Os11t0670700-00
Chr11	irgsp1_rep	three_prime_UTR	27107286	27107667	.	+	.	Parent=Os11t0670700-00
Chr11	irgsp1_rep	mRNA	27107884	27109125	.	+	.	ID=Os11t0670800-00;Name=Os11t0670800-00;Locus_id=Os11g0670800;Note=Similar to EAP30 family protein.;Transcript_evidence=BT034584 (DDBJ);ORF_evidence=Q2QZU7 (UniProt);TENOR=Os11t0670800-00;KEGG=Os11t0670800-00
Chr11	irgsp1_rep	five_prime_UTR	27107884	27107997	.	+	.	Parent=Os11t0670800-00
Chr11	irgsp1_rep	CDS	27107998	27108549	.	+	0	Parent=Os11t0670800-00
Chr11	irgsp1_rep	three_prime_UTR	27108550	27109125	.	+	.	Parent=Os11t0670800-00
Chr11	irgsp1_rep	mRNA	27111943	27112811	.	+	.	ID=Os11t0670900-01;Name=Os11t0670900-01;Locus_id=Os11g0670900;Note=Conserved hypothetical protein.;Transcript_evidence=AK108290 (DDBJ%2C Best hit);ORF_evidence=B8B9G8 (UniProt);NIAS_FLcDNA=002-141-D12;Expression=AK108290;TENOR=Os11t0670900-01;KEGG=Os11t0670900-01
Chr11	irgsp1_rep	five_prime_UTR	27111943	27112106	.	+	.	Parent=Os11t0670900-01
Chr11	irgsp1_rep	CDS	27112107	27112664	.	+	0	Parent=Os11t0670900-01
Chr11	irgsp1_rep	three_prime_UTR	27112665	27112811	.	+	.	Parent=Os11t0670900-01
Chr11	irgsp1_rep	mRNA	27116506	27118000	.	-	.	ID=Os11t0671000-01;Name=Os11t0671000-01;Locus_id=Os11g0671000;Oryzabase Gene Symbol Synonym(s)=ARP1;Oryzabase Gene Name Synonym(s)=auxin repressed protein 1;Note=Similar to Dormancy-associated protein.;Transcript_evidence=AK060981 (DDBJ%2C Best hit),AK119708 (DDBJ%2C Best hit);ORF_evidence=B6TQX4 (UniProt);NIAS_FLcDNA=006-202-H08,002-157-E08;Oryzabase=21531;TENOR=Os11t0671000-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	27117923	27118000	.	-	.	Parent=Os11t0671000-01
Chr11	irgsp1_rep	CDS	27117817	27117922	.	-	0	Parent=Os11t0671000-01
Chr11	irgsp1_rep	CDS	27117149	27117383	.	-	2	Parent=Os11t0671000-01
Chr11	irgsp1_rep	CDS	27116851	27116887	.	-	1	Parent=Os11t0671000-01
Chr11	irgsp1_rep	three_prime_UTR	27116506	27116850	.	-	.	Parent=Os11t0671000-01
Chr11	irgsp1_rep	mRNA	27116781	27117678	.	+	.	ID=Os11t0671100-01;Name=Os11t0671100-01;Locus_id=Os11g0671100;Note=Hypothetical protein.;Transcript_evidence=AK111295 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-181-A09;Expression=AK111295;TENOR=Os11t0671100-01;KEGG=Os11t0671100-01
Chr11	irgsp1_rep	five_prime_UTR	27116781	27117140	.	+	.	Parent=Os11t0671100-01
Chr11	irgsp1_rep	CDS	27117141	27117264	.	+	0	Parent=Os11t0671100-01
Chr11	irgsp1_rep	CDS	27117304	27117473	.	+	2	Parent=Os11t0671100-01
Chr11	irgsp1_rep	three_prime_UTR	27117474	27117678	.	+	.	Parent=Os11t0671100-01
Chr11	irgsp1_rep	mRNA	27132380	27138716	.	-	.	ID=Os11t0671600-00;Name=Os11t0671600-00;Locus_id=Os11g0671600;Note=Conserved hypothetical protein.;Transcript_evidence=AK288199 (DDBJ%2C Secondary hit);ORF_evidence=Q2QZU2 (UniProt);TENOR=Os11t0671600-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	27133294	27138716	.	-	.	Parent=Os11t0671600-00
Chr11	irgsp1_rep	CDS	27132380	27133293	.	-	0	Parent=Os11t0671600-00
Chr11	irgsp1_rep	mRNA	27142195	27145889	.	-	.	ID=Os11t0671650-01;Name=Os11t0671650-01;Locus_id=Os11g0671650;Note=Hypothetical gene.;Transcript_evidence=AK289109 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090096M17;TENOR=Os11t0671650-01;KEGG=Os11t0671650-01
Chr11	irgsp1_rep	five_prime_UTR	27145462	27145889	.	-	.	Parent=Os11t0671650-01
Chr11	irgsp1_rep	CDS	27145147	27145461	.	-	0	Parent=Os11t0671650-01
Chr11	irgsp1_rep	three_prime_UTR	27142195	27145146	.	-	.	Parent=Os11t0671650-01
Chr11	irgsp1_rep	mRNA	27149392	27150408	.	+	.	ID=Os11t0671950-00;Name=Os11t0671950-00;Locus_id=Os11g0671950;CGSNL Gene Symbol=RLCK351;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 351;Oryzabase Gene Symbol Synonym(s)=OsRLCK351;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 351;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QZT9 (UniProt);Oryzabase=19021;TENOR=Os11t0671950-00
Chr11	irgsp1_rep	CDS	27149392	27149859	.	+	0	Parent=Os11t0671950-00
Chr11	irgsp1_rep	CDS	27150145	27150200	.	+	0	Parent=Os11t0671950-00
Chr11	irgsp1_rep	CDS	27150306	27150408	.	+	1	Parent=Os11t0671950-00
Chr11	irgsp1_rep	mRNA	27152574	27153181	.	+	.	ID=Os11t0672200-01;Name=Os11t0672200-01;Locus_id=Os11g0672200;CGSNL Gene Symbol=RLCK351;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 351;Oryzabase Gene Symbol Synonym(s)=OsRLCK351;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 351;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=AK107783 (DDBJ%2C Best hit);ORF_evidence=Q2QZT9 (UniProt);NIAS_FLcDNA=002-133-C09;Oryzabase=19021;Expression=AK107783;TENOR=Os11t0672200-01;KEGG=Os11t0672200-01
Chr11	irgsp1_rep	five_prime_UTR	27152574	27152597	.	+	.	Parent=Os11t0672200-01
Chr11	irgsp1_rep	CDS	27152598	27152945	.	+	0	Parent=Os11t0672200-01
Chr11	irgsp1_rep	three_prime_UTR	27152946	27153181	.	+	.	Parent=Os11t0672200-01
Chr11	irgsp1_rep	mRNA	27155346	27157693	.	+	.	ID=Os11t0672300-01;Name=Os11t0672300-01;Locus_id=Os11g0672300;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=AK066296 (DDBJ%2C Best hit);ORF_evidence=Q2QZT9 (UniProt);NIAS_FLcDNA=J013059O19;Expression=AK066296;TENOR=Os11t0672300-01;KEGG=Os11t0672300-01
Chr11	irgsp1_rep	five_prime_UTR	27155346	27155397	.	+	.	Parent=Os11t0672300-01
Chr11	irgsp1_rep	CDS	27155398	27155835	.	+	0	Parent=Os11t0672300-01
Chr11	irgsp1_rep	CDS	27156109	27156315	.	+	0	Parent=Os11t0672300-01
Chr11	irgsp1_rep	three_prime_UTR	27156316	27156786	.	+	.	Parent=Os11t0672300-01
Chr11	irgsp1_rep	three_prime_UTR	27157033	27157693	.	+	.	Parent=Os11t0672300-01
Chr11	irgsp1_rep	mRNA	27159075	27165177	.	-	.	ID=Os11t0672400-00;Name=Os11t0672400-00;Locus_id=Os11g0672400;Note=Calponin homology domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G8P1 (UniProt);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=Calponin homology domain (IPR001715),Kinesin%2C motor domain (IPR001752);TENOR=Os11t0672400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	27165021	27165177	.	-	0	Parent=Os11t0672400-00
Chr11	irgsp1_rep	CDS	27163600	27163766	.	-	2	Parent=Os11t0672400-00
Chr11	irgsp1_rep	CDS	27163385	27163519	.	-	0	Parent=Os11t0672400-00
Chr11	irgsp1_rep	CDS	27162919	27163176	.	-	0	Parent=Os11t0672400-00
Chr11	irgsp1_rep	CDS	27162767	27162838	.	-	0	Parent=Os11t0672400-00
Chr11	irgsp1_rep	CDS	27162617	27162685	.	-	0	Parent=Os11t0672400-00
Chr11	irgsp1_rep	CDS	27162415	27162510	.	-	0	Parent=Os11t0672400-00
Chr11	irgsp1_rep	CDS	27162140	27162280	.	-	0	Parent=Os11t0672400-00
Chr11	irgsp1_rep	CDS	27161976	27162057	.	-	0	Parent=Os11t0672400-00
Chr11	irgsp1_rep	CDS	27161785	27161880	.	-	2	Parent=Os11t0672400-00
Chr11	irgsp1_rep	CDS	27161629	27161675	.	-	2	Parent=Os11t0672400-00
Chr11	irgsp1_rep	CDS	27161084	27161224	.	-	0	Parent=Os11t0672400-00
Chr11	irgsp1_rep	CDS	27160756	27160892	.	-	0	Parent=Os11t0672400-00
Chr11	irgsp1_rep	CDS	27160391	27160644	.	-	1	Parent=Os11t0672400-00
Chr11	irgsp1_rep	CDS	27160142	27160269	.	-	2	Parent=Os11t0672400-00
Chr11	irgsp1_rep	CDS	27159920	27160069	.	-	0	Parent=Os11t0672400-00
Chr11	irgsp1_rep	CDS	27159314	27159717	.	-	0	Parent=Os11t0672400-00
Chr11	irgsp1_rep	CDS	27159075	27159222	.	-	1	Parent=Os11t0672400-00
Chr11	irgsp1_rep	mRNA	27175081	27177923	.	+	.	ID=Os11t0672600-01;Name=Os11t0672600-01;Locus_id=Os11g0672600;Note=Reverse transcriptase domain containing protein.;Transcript_evidence=AK119365 (DDBJ%2C Best hit);ORF_evidence=Q2QZT5 (UniProt);GO=Biological Process: RNA-dependent DNA replication (GO:0006278),Molecular Function: RNA binding (GO:0003723),Molecular Function: RNA-directed DNA polymerase activity (GO:0003964);InterPro=Reverse transcriptase (IPR000477);NIAS_FLcDNA=001-131-H01;TENOR=Os11t0672600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	27175081	27175469	.	+	.	Parent=Os11t0672600-01
Chr11	irgsp1_rep	CDS	27175470	27177128	.	+	0	Parent=Os11t0672600-01
Chr11	irgsp1_rep	three_prime_UTR	27177129	27177923	.	+	.	Parent=Os11t0672600-01
Chr11	irgsp1_rep	mRNA	27179323	27184026	.	-	.	ID=Os11t0672700-01;Name=Os11t0672700-01;Locus_id=Os11g0672700;RAP-DB Gene Symbol Synonym(s)=OsRecQ1;RAP-DB Gene Name Synonym(s)=QDE-3 homologue in rice%2C RecQ DNA helicase%2C RecQ-like helicase 1;CGSNL Gene Symbol=-;CGSNL Gene Name=-;Oryzabase Gene Symbol Synonym(s)=OsRecQ1;Oryzabase Gene Name Synonym(s)=QDE-3 homologue in rice%2C RecQ DNA helicase%2C RecQ-like helicase 1;Note=RecQ DNA helicase%2C RNA silencing;Transcript_evidence=AK101124 (Genbank);ORF_evidence=Q2QZT4 (UniProt);GO=Biological Process: DNA recombination (GO:0006310),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C ATP-dependent%2C DEAH-box type%2C conserved site (IPR002464),DNA helicase%2C ATP-dependent%2C RecQ type (IPR004589),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J033025L13;Manual Curation=September 17%2C 2009;Literature_PMID=18564381,16371241;Oryzabase=10296;Expression=AK101124;TENOR=Os11t0672700-01;KEGG=Os11t0672700-01 (EC:3.6.1.-)
Chr11	irgsp1_rep	five_prime_UTR	27183945	27184026	.	-	.	Parent=Os11t0672700-01
Chr11	irgsp1_rep	CDS	27183836	27183944	.	-	0	Parent=Os11t0672700-01
Chr11	irgsp1_rep	CDS	27181711	27182030	.	-	2	Parent=Os11t0672700-01
Chr11	irgsp1_rep	CDS	27181307	27181534	.	-	0	Parent=Os11t0672700-01
Chr11	irgsp1_rep	CDS	27181051	27181214	.	-	0	Parent=Os11t0672700-01
Chr11	irgsp1_rep	CDS	27180834	27180930	.	-	1	Parent=Os11t0672700-01
Chr11	irgsp1_rep	CDS	27180690	27180733	.	-	0	Parent=Os11t0672700-01
Chr11	irgsp1_rep	CDS	27180489	27180603	.	-	1	Parent=Os11t0672700-01
Chr11	irgsp1_rep	CDS	27180057	27180410	.	-	0	Parent=Os11t0672700-01
Chr11	irgsp1_rep	CDS	27179747	27179971	.	-	0	Parent=Os11t0672700-01
Chr11	irgsp1_rep	CDS	27179546	27179656	.	-	0	Parent=Os11t0672700-01
Chr11	irgsp1_rep	three_prime_UTR	27179323	27179545	.	-	.	Parent=Os11t0672700-01
Chr11	irgsp1_rep	mRNA	27191023	27195490	.	-	.	ID=Os11t0672800-01;Name=Os11t0672800-01;Locus_id=Os11g0672800;Note=Hypothetical protein.;Transcript_evidence=AK106728 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-114-H07;Expression=AK106728;TENOR=Os11t0672800-01;KEGG=Os11t0672800-01
Chr11	irgsp1_rep	five_prime_UTR	27195418	27195490	.	-	.	Parent=Os11t0672800-01
Chr11	irgsp1_rep	five_prime_UTR	27194848	27195335	.	-	.	Parent=Os11t0672800-01
Chr11	irgsp1_rep	five_prime_UTR	27194611	27194726	.	-	.	Parent=Os11t0672800-01
Chr11	irgsp1_rep	five_prime_UTR	27193999	27194092	.	-	.	Parent=Os11t0672800-01
Chr11	irgsp1_rep	five_prime_UTR	27193786	27193893	.	-	.	Parent=Os11t0672800-01
Chr11	irgsp1_rep	five_prime_UTR	27193467	27193572	.	-	.	Parent=Os11t0672800-01
Chr11	irgsp1_rep	five_prime_UTR	27192233	27192423	.	-	.	Parent=Os11t0672800-01
Chr11	irgsp1_rep	CDS	27191636	27192232	.	-	0	Parent=Os11t0672800-01
Chr11	irgsp1_rep	three_prime_UTR	27191023	27191635	.	-	.	Parent=Os11t0672800-01
Chr11	irgsp1_rep	mRNA	27191253	27192552	.	+	.	ID=Os11t0672900-01;Name=Os11t0672900-01;Locus_id=Os11g0672900;Note=Protein of unknown function DUF1645 family protein.;Transcript_evidence=AK105350 (DDBJ%2C Best hit);ORF_evidence=A2ZNK4 (UniProt);InterPro=Protein of unknown function DUF1645 (IPR012442);NIAS_FLcDNA=001-119-A05;Expression=AK105350;TENOR=Os11t0672900-01;KEGG=Os11t0672900-01
Chr11	irgsp1_rep	five_prime_UTR	27191253	27191294	.	+	.	Parent=Os11t0672900-01
Chr11	irgsp1_rep	CDS	27191295	27192317	.	+	0	Parent=Os11t0672900-01
Chr11	irgsp1_rep	three_prime_UTR	27192318	27192552	.	+	.	Parent=Os11t0672900-01
Chr11	irgsp1_rep	mRNA	27198361	27199970	.	-	.	ID=Os11t0673000-00;Name=Os11t0673000-00;Locus_id=Os11g0673000;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK364496 (DDBJ);ORF_evidence=NP_001068439.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os11t0673000-00
Chr11	irgsp1_rep	five_prime_UTR	27199930	27199970	.	-	.	Parent=Os11t0673000-00
Chr11	irgsp1_rep	CDS	27198382	27199929	.	-	0	Parent=Os11t0673000-00
Chr11	irgsp1_rep	three_prime_UTR	27198361	27198381	.	-	.	Parent=Os11t0673000-00
Chr11	irgsp1_rep	mRNA	27200382	27202904	.	-	.	ID=Os11t0673100-01;Name=Os11t0673100-01;Locus_id=Os11g0673100;RAP-DB Gene Symbol Synonym(s)=OsPM27%2C PM27;CGSNL Gene Symbol=PM27;Oryzabase Gene Symbol Synonym(s)=OsPM27;Oryzabase Gene Name Synonym(s)=seed maturation protein PM27;Note=Seed maturation protein%2C osa-miR164c target gene%2C Regulation of seed vigor;Transcript_evidence=AK068515,AK104131,AK106183;ORF_evidence=Q2QZT1;InterPro=Domain of unknown function DUF4149 (IPR025423);NIAS_FLcDNA=J013153K10,006-204-D03,001-208-D05;Manual Curation=September 20%2C 2019;Literature_PMID=30791202;Oryzabase=23077;TENOR=Os11t0673100-01
Chr11	irgsp1_rep	five_prime_UTR	27202785	27202904	.	-	.	Parent=Os11t0673100-01
Chr11	irgsp1_rep	CDS	27202585	27202784	.	-	0	Parent=Os11t0673100-01
Chr11	irgsp1_rep	CDS	27201539	27201758	.	-	1	Parent=Os11t0673100-01
Chr11	irgsp1_rep	CDS	27200550	27200765	.	-	0	Parent=Os11t0673100-01
Chr11	irgsp1_rep	three_prime_UTR	27200382	27200549	.	-	.	Parent=Os11t0673100-01
Chr11	irgsp1_rep	mRNA	27200507	27202785	.	+	.	ID=Os11t0673150-00;Name=Os11t0673150-00;Locus_id=Os11g0673150;Note=Hypothetical gene.;Transcript_evidence=BT018978 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0673150-00;KEGG=Os11t0673150-00
Chr11	irgsp1_rep	five_prime_UTR	27200507	27200522	.	+	.	Parent=Os11t0673150-00
Chr11	irgsp1_rep	CDS	27200523	27200767	.	+	0	Parent=Os11t0673150-00
Chr11	irgsp1_rep	CDS	27201544	27201652	.	+	1	Parent=Os11t0673150-00
Chr11	irgsp1_rep	three_prime_UTR	27201653	27201742	.	+	.	Parent=Os11t0673150-00
Chr11	irgsp1_rep	three_prime_UTR	27202566	27202785	.	+	.	Parent=Os11t0673150-00
Chr11	irgsp1_rep	mRNA	27203693	27210574	.	-	.	ID=Os11t0673200-01;Name=Os11t0673200-01;Locus_id=Os11g0673200;Note=Similar to Auxin-induced beta-glucosidase.;Transcript_evidence=AK288359 (DDBJ%2C Best hit);ORF_evidence=B6SWK9 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 3%2C N-terminal (IPR001764),Glycoside hydrolase%2C family 3%2C C-terminal (IPR002772),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J090024N02;TENOR=Os11t0673200-01;KEGG=Os11t0673200-01
Chr11	irgsp1_rep	five_prime_UTR	27210135	27210574	.	-	.	Parent=Os11t0673200-01
Chr11	irgsp1_rep	five_prime_UTR	27206686	27206707	.	-	.	Parent=Os11t0673200-01
Chr11	irgsp1_rep	CDS	27205335	27206685	.	-	0	Parent=Os11t0673200-01
Chr11	irgsp1_rep	CDS	27203969	27204612	.	-	2	Parent=Os11t0673200-01
Chr11	irgsp1_rep	three_prime_UTR	27203693	27203968	.	-	.	Parent=Os11t0673200-01
Chr11	irgsp1_rep	mRNA	27210022	27210615	.	+	.	ID=Os11t0673400-00;Name=Os11t0673400-00;Locus_id=Os11g0673400;Note=Hypothetical gene.;Transcript_evidence=EU947114 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0673400-00;KEGG=Os11t0673400-00
Chr11	irgsp1_rep	five_prime_UTR	27210022	27210141	.	+	.	Parent=Os11t0673400-00
Chr11	irgsp1_rep	CDS	27210142	27210615	.	+	0	Parent=Os11t0673400-00
Chr11	irgsp1_rep	mRNA	27223472	27224956	.	+	.	ID=Os11t0673600-00;Name=Os11t0673600-00;Locus_id=Os11g0673600;Oryzabase Gene Symbol Synonym(s)=YR2%2C YR6%2C YR9%2C YR10%2C YR21%2C YR23;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QZS9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);Oryzabase=15176;TENOR=Os11t0673600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	27223472	27224956	.	+	0	Parent=Os11t0673600-00
Chr11	irgsp1_rep	mRNA	27234759	27237260	.	+	.	ID=Os11t0673900-00;Name=Os11t0673900-00;Locus_id=Os11g0673900;CGSNL Gene Symbol=DRP-RP13;CGSNL Gene Name=DISEASE RESISTANCE PROTEIN RPP13;Oryzabase Gene Symbol Synonym(s)=OsDRP-RP13;Oryzabase Gene Name Synonym(s)=disease resistance protein RPP13;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=EU685838 (DDBJ);ORF_evidence=Q2QZS8 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: protein binding (GO:0005515),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),Leucine-rich repeat (IPR001611),NB-ARC (IPR002182);Oryzabase=23318;TENOR=Os11t0673900-00
Chr11	irgsp1_rep	CDS	27234759	27237260	.	+	0	Parent=Os11t0673900-00
Chr11	irgsp1_rep	mRNA	27261093	27264194	.	+	.	ID=Os11t0674400-00;Name=Os11t0674400-00;Locus_id=Os11g0674400;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QZS0 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os11t0674400-00;KEGG=Os11t0674400-00
Chr11	irgsp1_rep	CDS	27261093	27264194	.	+	0	Parent=Os11t0674400-00
Chr11	irgsp1_rep	mRNA	27279901	27280797	.	+	.	ID=Os11t0674932-00;Name=Os11t0674932-00;Locus_id=Os11g0674932;Note=Conserved hypothetical protein.;Transcript_evidence=FP101581 (DDBJ);ORF_evidence=NP_001067017.1 (RefSeq);TENOR=Os11t0674932-00
Chr11	irgsp1_rep	five_prime_UTR	27279901	27279963	.	+	.	Parent=Os11t0674932-00
Chr11	irgsp1_rep	CDS	27279964	27280042	.	+	0	Parent=Os11t0674932-00
Chr11	irgsp1_rep	CDS	27280508	27280686	.	+	2	Parent=Os11t0674932-00
Chr11	irgsp1_rep	three_prime_UTR	27280687	27280797	.	+	.	Parent=Os11t0674932-00
Chr11	irgsp1_rep	mRNA	27284263	27285315	.	+	.	ID=Os11t0675200-00;Name=Os11t0675200-00;Locus_id=Os11g0675200;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QZS9 (UniProt);TENOR=Os11t0675200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	27284263	27285040	.	+	0	Parent=Os11t0675200-00
Chr11	irgsp1_rep	CDS	27285092	27285315	.	+	2	Parent=Os11t0675200-00
Chr11	irgsp1_rep	mRNA	27272132	27272680	.	+	.	ID=Os11t0676050-00;Name=Os11t0676050-00;Locus_id=Os11g0676050;Oryzabase Gene Symbol Synonym(s)=Osh359-2;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QZR9 (UniProt);Oryzabase=14406;TENOR=Os11t0676050-00
Chr11	irgsp1_rep	CDS	27272132	27272680	.	+	0	Parent=Os11t0676050-00
Chr11	irgsp1_rep	mRNA	27242070	27243344	.	+	.	ID=Os11t0676100-00;Name=Os11t0676100-00;Locus_id=Os11g0676100;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QZS6 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os11t0676100-00;KEGG=Os11t0676100-00
Chr11	irgsp1_rep	CDS	27242070	27243344	.	+	0	Parent=Os11t0676100-00
Chr11	irgsp1_rep	mRNA	27243444	27245161	.	+	.	ID=Os11t0676200-00;Name=Os11t0676200-00;Locus_id=Os11g0676200;Note=Similar to NBS-LRR-like protein NBA2 (Fragment).;Transcript_evidence=EU685838 (DDBJ);ORF_evidence=Q9FVL9 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: protein binding (GO:0005515),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),Leucine-rich repeat (IPR001611),NB-ARC (IPR002182),Leucine-rich repeat%2C typical subtype (IPR003591);TENOR=Os11t0676200-00
Chr11	irgsp1_rep	five_prime_UTR	27243444	27243448	.	+	.	Parent=Os11t0676200-00
Chr11	irgsp1_rep	CDS	27243449	27245161	.	+	0	Parent=Os11t0676200-00
Chr11	irgsp1_rep	mRNA	27321474	27322040	.	+	.	ID=Os11t0676500-00;Name=Os11t0676500-00;Locus_id=Os11g0676500;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001068447.1 (RefSeq);TENOR=Os11t0676500-00;KEGG=Os11t0676500-00
Chr11	irgsp1_rep	CDS	27321474	27322040	.	+	0	Parent=Os11t0676500-00
Chr11	irgsp1_rep	mRNA	27331081	27339928	.	+	.	ID=Os11t0676650-00;Name=Os11t0676650-00;Locus_id=Os11g0676650;Note=Similar to DNA-directed RNA polymerase subunit.;Transcript_evidence=FP095690 (DDBJ);ORF_evidence=Q2QNM4 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C TFIIS-type (IPR001222);TENOR=Os11t0676650-00
Chr11	irgsp1_rep	CDS	27331081	27331272	.	+	0	Parent=Os11t0676650-00
Chr11	irgsp1_rep	CDS	27339663	27339713	.	+	0	Parent=Os11t0676650-00
Chr11	irgsp1_rep	three_prime_UTR	27339714	27339928	.	+	.	Parent=Os11t0676650-00
Chr11	irgsp1_rep	mRNA	27335214	27337380	.	+	.	ID=Os11t0676800-00;Name=Os11t0676800-00;Locus_id=Os11g0676800;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QZQ9 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os11t0676800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	27335214	27337068	.	+	0	Parent=Os11t0676800-00
Chr11	irgsp1_rep	CDS	27337313	27337380	.	+	2	Parent=Os11t0676800-00
Chr11	irgsp1_rep	mRNA	27343795	27345123	.	+	.	ID=Os11t0677000-00;Name=Os11t0677000-00;Locus_id=Os11g0677000;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QZS9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591);TENOR=Os11t0677000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	27343795	27345123	.	+	0	Parent=Os11t0677000-00
Chr11	irgsp1_rep	mRNA	27343675	27345005	.	-	.	ID=Os11t0677050-01;Name=Os11t0677050-01;Locus_id=Os11g0677050;Note=Non-protein coding transcript.;Transcript_evidence=AK064454 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-110-F09;TENOR=Os11t0677050-01
Chr11	irgsp1_rep	exon	27343675	27345005	.	-	.	Parent=Os11t0677050-01
Chr11	irgsp1_rep	mRNA	27352010	27353218	.	+	.	ID=Os11t0677101-00;Name=Os11t0677101-00;Locus_id=Os11g0677101;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QZR9 (UniProt);TENOR=Os11t0677101-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	27352010	27353218	.	+	0	Parent=Os11t0677101-00
Chr11	irgsp1_rep	mRNA	27366801	27368303	.	-	.	ID=Os11t0677400-01;Name=Os11t0677400-01;Locus_id=Os11g0677400;Note=Pectinesterase inhibitor domain containing protein.;Transcript_evidence=AK069580 (DDBJ%2C Best hit);ORF_evidence=A2ZGT6 (UniProt);GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);NIAS_FLcDNA=J023020A19;Expression=AK069580;TENOR=Os11t0677400-01;KEGG=Os11t0677400-01
Chr11	irgsp1_rep	five_prime_UTR	27368275	27368303	.	-	.	Parent=Os11t0677400-01
Chr11	irgsp1_rep	CDS	27366907	27368274	.	-	0	Parent=Os11t0677400-01
Chr11	irgsp1_rep	three_prime_UTR	27366801	27366906	.	-	.	Parent=Os11t0677400-01
Chr11	irgsp1_rep	mRNA	27368754	27381376	.	-	.	ID=Os11t0677425-00;Name=Os11t0677425-00;Locus_id=Os11g0677425;Note=Similar to Ribonucleases P/MRP protein subunit POP1 containing protein%2C expressed.;Transcript_evidence=EU943208 (DDBJ);ORF_evidence=Q2QZQ0 (UniProt);TENOR=Os11t0677425-00
Chr11	irgsp1_rep	CDS	27380832	27381376	.	-	0	Parent=Os11t0677425-00
Chr11	irgsp1_rep	CDS	27380440	27380527	.	-	1	Parent=Os11t0677425-00
Chr11	irgsp1_rep	three_prime_UTR	27380342	27380439	.	-	.	Parent=Os11t0677425-00
Chr11	irgsp1_rep	three_prime_UTR	27368754	27368944	.	-	.	Parent=Os11t0677425-00
Chr11	irgsp1_rep	mRNA	27383694	27386883	.	-	.	ID=Os11t0677500-00;Name=Os11t0677500-00;Locus_id=Os11g0677500;Note=Similar to Ribonucleases P/MRP protein subunit POP1 containing protein%2C expressed.;Transcript_evidence=EU943208 (DDBJ);ORF_evidence=Q2QZQ0 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Molecular Function: ribonuclease P activity (GO:0004526);InterPro=POPLD (IPR012590);TENOR=Os11t0677500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	27386707	27386883	.	-	0	Parent=Os11t0677500-00
Chr11	irgsp1_rep	CDS	27386459	27386577	.	-	0	Parent=Os11t0677500-00
Chr11	irgsp1_rep	CDS	27385816	27386358	.	-	1	Parent=Os11t0677500-00
Chr11	irgsp1_rep	CDS	27385303	27385411	.	-	1	Parent=Os11t0677500-00
Chr11	irgsp1_rep	CDS	27384443	27385011	.	-	0	Parent=Os11t0677500-00
Chr11	irgsp1_rep	CDS	27384086	27384173	.	-	1	Parent=Os11t0677500-00
Chr11	irgsp1_rep	three_prime_UTR	27383993	27384085	.	-	.	Parent=Os11t0677500-00
Chr11	irgsp1_rep	three_prime_UTR	27383694	27383898	.	-	.	Parent=Os11t0677500-00
Chr11	irgsp1_rep	mRNA	27399450	27406535	.	+	.	ID=Os11t0678000-01;Name=Os11t0678000-01;Locus_id=Os11g0678000;Note=Similar to PAS domain containing protein%2C expressed.;Transcript_evidence=AK318586 (DDBJ%2C Best hit);ORF_evidence=Q2QZP6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: signal transduction (GO:0007165),Molecular Function: signal transducer activity (GO:0004871);InterPro=PAS (IPR000014),PAS fold (IPR013767);NIAS_FLcDNA=J100024I12;TENOR=Os11t0678000-01;KEGG=Os11t0678000-01
Chr11	irgsp1_rep	five_prime_UTR	27399450	27399797	.	+	.	Parent=Os11t0678000-01
Chr11	irgsp1_rep	CDS	27399798	27400090	.	+	0	Parent=Os11t0678000-01
Chr11	irgsp1_rep	CDS	27400822	27401248	.	+	1	Parent=Os11t0678000-01
Chr11	irgsp1_rep	CDS	27401372	27401383	.	+	0	Parent=Os11t0678000-01
Chr11	irgsp1_rep	three_prime_UTR	27401384	27401985	.	+	.	Parent=Os11t0678000-01
Chr11	irgsp1_rep	three_prime_UTR	27402873	27402913	.	+	.	Parent=Os11t0678000-01
Chr11	irgsp1_rep	three_prime_UTR	27402995	27403063	.	+	.	Parent=Os11t0678000-01
Chr11	irgsp1_rep	three_prime_UTR	27403379	27403479	.	+	.	Parent=Os11t0678000-01
Chr11	irgsp1_rep	three_prime_UTR	27404114	27404192	.	+	.	Parent=Os11t0678000-01
Chr11	irgsp1_rep	three_prime_UTR	27404769	27404867	.	+	.	Parent=Os11t0678000-01
Chr11	irgsp1_rep	three_prime_UTR	27404943	27405189	.	+	.	Parent=Os11t0678000-01
Chr11	irgsp1_rep	three_prime_UTR	27405281	27405362	.	+	.	Parent=Os11t0678000-01
Chr11	irgsp1_rep	three_prime_UTR	27405845	27405939	.	+	.	Parent=Os11t0678000-01
Chr11	irgsp1_rep	three_prime_UTR	27406069	27406535	.	+	.	Parent=Os11t0678000-01
Chr11	irgsp1_rep	mRNA	27399794	27406158	.	-	.	ID=Os11t0678100-00;Name=Os11t0678100-00;Locus_id=Os11g0678100;Note=Hypothetical protein.;Transcript_evidence=tplb0053f17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0678100-00
Chr11	irgsp1_rep	five_prime_UTR	27406073	27406158	.	-	.	Parent=Os11t0678100-00
Chr11	irgsp1_rep	five_prime_UTR	27405823	27405948	.	-	.	Parent=Os11t0678100-00
Chr11	irgsp1_rep	five_prime_UTR	27405281	27405347	.	-	.	Parent=Os11t0678100-00
Chr11	irgsp1_rep	five_prime_UTR	27405140	27405189	.	-	.	Parent=Os11t0678100-00
Chr11	irgsp1_rep	five_prime_UTR	27404753	27405011	.	-	.	Parent=Os11t0678100-00
Chr11	irgsp1_rep	five_prime_UTR	27404105	27404181	.	-	.	Parent=Os11t0678100-00
Chr11	irgsp1_rep	five_prime_UTR	27403377	27403471	.	-	.	Parent=Os11t0678100-00
Chr11	irgsp1_rep	five_prime_UTR	27402986	27403061	.	-	.	Parent=Os11t0678100-00
Chr11	irgsp1_rep	five_prime_UTR	27401523	27402012	.	-	.	Parent=Os11t0678100-00
Chr11	irgsp1_rep	CDS	27401378	27401522	.	-	0	Parent=Os11t0678100-00
Chr11	irgsp1_rep	CDS	27401180	27401259	.	-	2	Parent=Os11t0678100-00
Chr11	irgsp1_rep	three_prime_UTR	27400818	27401179	.	-	.	Parent=Os11t0678100-00
Chr11	irgsp1_rep	three_prime_UTR	27399794	27400036	.	-	.	Parent=Os11t0678100-00
Chr11	irgsp1_rep	mRNA	27408007	27409934	.	+	.	ID=Os11t0678200-01;Name=Os11t0678200-01;Locus_id=Os11g0678200;Note=Conserved hypothetical protein.;Transcript_evidence=AK108189 (DDBJ%2C Best hit);ORF_evidence=Q2QZP3 (UniProt);NIAS_FLcDNA=002-140-B12;Expression=AK108189;TENOR=Os11t0678200-01;KEGG=Os11t0678200-01
Chr11	irgsp1_rep	five_prime_UTR	27408007	27408103	.	+	.	Parent=Os11t0678200-01
Chr11	irgsp1_rep	CDS	27408104	27408138	.	+	0	Parent=Os11t0678200-01
Chr11	irgsp1_rep	CDS	27409283	27409670	.	+	1	Parent=Os11t0678200-01
Chr11	irgsp1_rep	three_prime_UTR	27409671	27409934	.	+	.	Parent=Os11t0678200-01
Chr11	irgsp1_rep	mRNA	27413483	27415869	.	+	.	ID=Os11t0678301-00;Name=Os11t0678301-00;Locus_id=Os11g0678301;Note=Hypothetical conserved gene.;Transcript_evidence=CT836567 (DDBJ%2C Best hit);ORF_evidence=A2Y215 (UniProt);TENOR=Os11t0678301-00;KEGG=Os11t0678301-00
Chr11	irgsp1_rep	five_prime_UTR	27413483	27413484	.	+	.	Parent=Os11t0678301-00
Chr11	irgsp1_rep	CDS	27413485	27413606	.	+	0	Parent=Os11t0678301-00
Chr11	irgsp1_rep	CDS	27415256	27415634	.	+	1	Parent=Os11t0678301-00
Chr11	irgsp1_rep	three_prime_UTR	27415635	27415869	.	+	.	Parent=Os11t0678301-00
Chr11	irgsp1_rep	mRNA	27428398	27430560	.	+	.	ID=Os11t0678400-00;Name=Os11t0678400-00;Locus_id=Os11g0678400;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=EF155648 (DDBJ);ORF_evidence=Q2QZP0 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);Oryzabase=14963;TENOR=Os11t0678400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	27428398	27430560	.	+	0	Parent=Os11t0678400-00
Chr11	irgsp1_rep	mRNA	27451209	27452951	.	-	.	ID=Os11t0679000-00;Name=Os11t0679000-00;Locus_id=Os11g0679000;Note=von Willebrand factor%2C type A domain containing protein.;Transcript_evidence=FP091693 (DDBJ);ORF_evidence=B8BII0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=von Willebrand factor%2C type A (IPR002035);TENOR=Os11t0679000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	27451209	27452951	.	-	0	Parent=Os11t0679000-00
Chr11	irgsp1_rep	mRNA	27486903	27490269	.	+	.	ID=Os11t0679700-01;Name=Os11t0679700-01;Locus_id=Os11g0679700;RAP-DB Gene Symbol Synonym(s)=OsGPAT3;RAP-DB Gene Name Synonym(s)=Glycerol-3-Phosphate Acyltransferase 3;CGSNL Gene Symbol=GPAT3;CGSNL Gene Name=GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 3;Oryzabase Gene Symbol Synonym(s)=OsGPAT3;Oryzabase Gene Name Synonym(s)=Glycerol-3-Phosphate Acyltransferase 3;Note=Glycerol-3-phosphate acyltransferase%2C Anther development%2C Pollen formation;Transcript_evidence=AK120619;ORF_evidence=Q2QZN3;GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Phospholipid/glycerol acyltransferase (IPR002123);NIAS_FLcDNA=J013152C07;Manual Curation=June 5%2C 2017;Literature_PMID=28082511;Oryzabase=21917;TENOR=Os11t0679700-01;Subcellular location=endoplasmic reticulum (GO:0005783)
Chr11	irgsp1_rep	five_prime_UTR	27486903	27486965	.	+	.	Parent=Os11t0679700-01
Chr11	irgsp1_rep	CDS	27486966	27487670	.	+	0	Parent=Os11t0679700-01
Chr11	irgsp1_rep	CDS	27489086	27490012	.	+	0	Parent=Os11t0679700-01
Chr11	irgsp1_rep	three_prime_UTR	27490013	27490269	.	+	.	Parent=Os11t0679700-01
Chr11	irgsp1_rep	mRNA	27492119	27495458	.	-	.	ID=Os11t0679900-01;Name=Os11t0679900-01;Locus_id=Os11g0679900;Note=Conserved hypothetical protein.;Transcript_evidence=AK064550 (DDBJ%2C Best hit);ORF_evidence=Q2QZN2 (UniProt);NIAS_FLcDNA=002-112-B10;TENOR=Os11t0679900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	27494540	27495458	.	-	.	Parent=Os11t0679900-01
Chr11	irgsp1_rep	five_prime_UTR	27494214	27494434	.	-	.	Parent=Os11t0679900-01
Chr11	irgsp1_rep	CDS	27494189	27494213	.	-	0	Parent=Os11t0679900-01
Chr11	irgsp1_rep	CDS	27492928	27493145	.	-	2	Parent=Os11t0679900-01
Chr11	irgsp1_rep	three_prime_UTR	27492874	27492927	.	-	.	Parent=Os11t0679900-01
Chr11	irgsp1_rep	three_prime_UTR	27492622	27492738	.	-	.	Parent=Os11t0679900-01
Chr11	irgsp1_rep	three_prime_UTR	27492119	27492470	.	-	.	Parent=Os11t0679900-01
Chr11	irgsp1_rep	mRNA	27495679	27498080	.	-	.	ID=Os11t0680200-00;Name=Os11t0680200-00;Locus_id=Os11g0680200;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G8U1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os11t0680200-00
Chr11	irgsp1_rep	CDS	27495745	27498080	.	-	0	Parent=Os11t0680200-00
Chr11	irgsp1_rep	CDS	27495679	27495700	.	-	1	Parent=Os11t0680200-00
Chr11	irgsp1_rep	mRNA	27497725	27497876	.	+	.	ID=Os11t0680500-00;Name=Os11t0680500-00;Locus_id=Os11g0680500;Note=Non-protein coding transcript.;Transcript_evidence=BT087207 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0680500-00
Chr11	irgsp1_rep	exon	27497725	27497876	.	+	.	Parent=Os11t0680500-00
Chr11	irgsp1_rep	mRNA	27548563	27548895	.	-	.	ID=Os11t0680800-00;Name=Os11t0680800-00;Locus_id=Os11g0680800;Note=Conserved hypothetical protein.;Transcript_evidence=AK252273 (DDBJ);ORF_evidence=B9F8L6 (UniProt);TENOR=Os11t0680800-00
Chr11	irgsp1_rep	five_prime_UTR	27548698	27548895	.	-	.	Parent=Os11t0680800-00
Chr11	irgsp1_rep	CDS	27548563	27548697	.	-	0	Parent=Os11t0680800-00
Chr11	irgsp1_rep	mRNA	27565072	27567357	.	-	.	ID=Os11t0681300-00;Name=Os11t0681300-00;Locus_id=Os11g0681300;Note=Similar to Cyclin-like F-box%3B FAR1%3B Zinc finger%2C SWIM-type.;Transcript_evidence=AK375756 (DDBJ);ORF_evidence=Q2HSZ7 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=FAR1 DNA binding domain (IPR004330),Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);TENOR=Os11t0681300-00
Chr11	irgsp1_rep	CDS	27565072	27567357	.	-	0	Parent=Os11t0681300-00
Chr11	irgsp1_rep	mRNA	27571044	27574081	.	-	.	ID=Os11t0681400-00;Name=Os11t0681400-00;Locus_id=Os11g0681400;CGSNL Gene Symbol=RLCK352;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 352;Oryzabase Gene Symbol Synonym(s)=OsRLCK352;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 352;Note=Similar to protein kinase.;Transcript_evidence=AK362681 (DDBJ);ORF_evidence=NP_001147825.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Gnk2-homologous domain (IPR002902),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Tyrosine-protein kinase%2C catalytic domain (IPR020635),S-locus receptor kinase%2C C-terminal (IPR021820);Oryzabase=19022;TENOR=Os11t0681400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	27573654	27574081	.	-	.	Parent=Os11t0681400-00
Chr11	irgsp1_rep	CDS	27573647	27573653	.	-	0	Parent=Os11t0681400-00
Chr11	irgsp1_rep	CDS	27573256	27573554	.	-	2	Parent=Os11t0681400-00
Chr11	irgsp1_rep	CDS	27572541	27572693	.	-	0	Parent=Os11t0681400-00
Chr11	irgsp1_rep	CDS	27572139	27572349	.	-	0	Parent=Os11t0681400-00
Chr11	irgsp1_rep	CDS	27571797	27572034	.	-	2	Parent=Os11t0681400-00
Chr11	irgsp1_rep	CDS	27571557	27571707	.	-	1	Parent=Os11t0681400-00
Chr11	irgsp1_rep	CDS	27571083	27571385	.	-	0	Parent=Os11t0681400-00
Chr11	irgsp1_rep	three_prime_UTR	27571044	27571082	.	-	.	Parent=Os11t0681400-00
Chr11	irgsp1_rep	mRNA	27583624	27589186	.	-	.	ID=Os11t0682000-01;Name=Os11t0682000-01;Locus_id=Os11g0682000;Note=Hypothetical conserved gene.;Transcript_evidence=AK241956 (DDBJ%2C Best hit);ORF_evidence=Q2QZL5 (UniProt);NIAS_FLcDNA=J075092I01;TENOR=Os11t0682000-01;KEGG=Os11t0682000-01
Chr11	irgsp1_rep	five_prime_UTR	27588552	27589186	.	-	.	Parent=Os11t0682000-01
Chr11	irgsp1_rep	CDS	27588142	27588551	.	-	0	Parent=Os11t0682000-01
Chr11	irgsp1_rep	CDS	27584012	27585476	.	-	1	Parent=Os11t0682000-01
Chr11	irgsp1_rep	three_prime_UTR	27583624	27584011	.	-	.	Parent=Os11t0682000-01
Chr11	irgsp1_rep	mRNA	27590980	27596159	.	+	.	ID=Os11t0682300-01;Name=Os11t0682300-01;Locus_id=Os11g0682300;Note=Similar to Splicing factor U2af large subunit B.;Transcript_evidence=AK066311 (DDBJ%2C Best hit);ORF_evidence=Q2QZL4 (UniProt);NIAS_FLcDNA=J013068A09;TENOR=Os11t0682300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	27590980	27591031	.	+	.	Parent=Os11t0682300-01
Chr11	irgsp1_rep	CDS	27591032	27591085	.	+	0	Parent=Os11t0682300-01
Chr11	irgsp1_rep	CDS	27592126	27592406	.	+	0	Parent=Os11t0682300-01
Chr11	irgsp1_rep	CDS	27592594	27592698	.	+	1	Parent=Os11t0682300-01
Chr11	irgsp1_rep	CDS	27593079	27593235	.	+	1	Parent=Os11t0682300-01
Chr11	irgsp1_rep	three_prime_UTR	27593236	27594251	.	+	.	Parent=Os11t0682300-01
Chr11	irgsp1_rep	three_prime_UTR	27594361	27594402	.	+	.	Parent=Os11t0682300-01
Chr11	irgsp1_rep	three_prime_UTR	27594485	27594544	.	+	.	Parent=Os11t0682300-01
Chr11	irgsp1_rep	three_prime_UTR	27594683	27595303	.	+	.	Parent=Os11t0682300-01
Chr11	irgsp1_rep	three_prime_UTR	27595415	27595550	.	+	.	Parent=Os11t0682300-01
Chr11	irgsp1_rep	three_prime_UTR	27595767	27595834	.	+	.	Parent=Os11t0682300-01
Chr11	irgsp1_rep	three_prime_UTR	27595911	27596159	.	+	.	Parent=Os11t0682300-01
Chr11	irgsp1_rep	mRNA	27603341	27604492	.	-	.	ID=Os11t0682501-00;Name=Os11t0682501-00;Locus_id=Os11g0682501;Note=Disease resistance protein domain containing protein.;Transcript_evidence=AB325481 (DDBJ);ORF_evidence=Q2QZL1 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182),ATPase%2C AAA+ type%2C core (IPR003593);TENOR=Os11t0682501-00
Chr11	irgsp1_rep	CDS	27603341	27604492	.	-	0	Parent=Os11t0682501-00
Chr11	irgsp1_rep	mRNA	27605099	27609143	.	-	.	ID=Os11t0682600-01;Name=Os11t0682600-01;Locus_id=Os11g0682600;Note=Conserved hypothetical protein.;Transcript_evidence=AK242652 (DDBJ%2C Best hit);ORF_evidence=Q2QZL1 (UniProt);NIAS_FLcDNA=J090026G08;TENOR=Os11t0682600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	27605788	27609143	.	-	.	Parent=Os11t0682600-01
Chr11	irgsp1_rep	CDS	27605099	27605787	.	-	0	Parent=Os11t0682600-01
Chr11	irgsp1_rep	mRNA	27650600	27655229	.	-	.	ID=Os11t0683500-01;Name=Os11t0683500-01;Locus_id=Os11g0683500;CGSNL Gene Symbol=BGLU36;CGSNL Gene Name=BETA-GLUCOSIDASE 36;Oryzabase Gene Symbol Synonym(s)=Os11bglu36%2C Os11Bglu36%2C SFR2%2C sfr2;Oryzabase Gene Name Synonym(s)=beta-glucosidase 36%2C SENSITIVE TO FREEZING2;Note=Hypothetical conserved gene.;Transcript_evidence=AK067619 (DDBJ%2C Best hit);ORF_evidence=Q8L6H7 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J013110O12;Oryzabase=12109;Expression=AK067619;TENOR=Os11t0683500-01;KEGG=Os11t0683500-01
Chr11	irgsp1_rep	five_prime_UTR	27655156	27655229	.	-	.	Parent=Os11t0683500-01
Chr11	irgsp1_rep	CDS	27654960	27655155	.	-	0	Parent=Os11t0683500-01
Chr11	irgsp1_rep	CDS	27654127	27654478	.	-	2	Parent=Os11t0683500-01
Chr11	irgsp1_rep	CDS	27653665	27653803	.	-	1	Parent=Os11t0683500-01
Chr11	irgsp1_rep	CDS	27653389	27653555	.	-	0	Parent=Os11t0683500-01
Chr11	irgsp1_rep	CDS	27653263	27653305	.	-	1	Parent=Os11t0683500-01
Chr11	irgsp1_rep	three_prime_UTR	27653070	27653262	.	-	.	Parent=Os11t0683500-01
Chr11	irgsp1_rep	three_prime_UTR	27652775	27652946	.	-	.	Parent=Os11t0683500-01
Chr11	irgsp1_rep	three_prime_UTR	27651793	27652703	.	-	.	Parent=Os11t0683500-01
Chr11	irgsp1_rep	three_prime_UTR	27651185	27651437	.	-	.	Parent=Os11t0683500-01
Chr11	irgsp1_rep	three_prime_UTR	27651032	27651098	.	-	.	Parent=Os11t0683500-01
Chr11	irgsp1_rep	three_prime_UTR	27650600	27650851	.	-	.	Parent=Os11t0683500-01
Chr11	irgsp1_rep	mRNA	27648703	27655229	.	-	.	ID=Os11t0683500-02;Name=Os11t0683500-02;Locus_id=Os11g0683500;CGSNL Gene Symbol=BGLU36;CGSNL Gene Name=BETA-GLUCOSIDASE 36;Oryzabase Gene Symbol Synonym(s)=Os11bglu36%2C Os11Bglu36%2C SFR2%2C sfr2;Oryzabase Gene Name Synonym(s)=beta-glucosidase 36%2C SENSITIVE TO FREEZING2;Note=Glycoside hydrolase%2C family 1 protein.;Transcript_evidence=AK119461 (DDBJ%2C Best hit);ORF_evidence=Q8L6H7 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 1%2C active site (IPR018120);NIAS_FLcDNA=001-133-E10;Oryzabase=12109;Expression=AK119461;TENOR=Os11t0683500-02;KEGG=Os11t0683500-02
Chr11	irgsp1_rep	five_prime_UTR	27655156	27655229	.	-	.	Parent=Os11t0683500-02
Chr11	irgsp1_rep	CDS	27654960	27655155	.	-	0	Parent=Os11t0683500-02
Chr11	irgsp1_rep	CDS	27654127	27654478	.	-	2	Parent=Os11t0683500-02
Chr11	irgsp1_rep	CDS	27653665	27653803	.	-	1	Parent=Os11t0683500-02
Chr11	irgsp1_rep	CDS	27653389	27653555	.	-	0	Parent=Os11t0683500-02
Chr11	irgsp1_rep	CDS	27653070	27653291	.	-	1	Parent=Os11t0683500-02
Chr11	irgsp1_rep	CDS	27652775	27652946	.	-	1	Parent=Os11t0683500-02
Chr11	irgsp1_rep	CDS	27652470	27652703	.	-	0	Parent=Os11t0683500-02
Chr11	irgsp1_rep	CDS	27652232	27652381	.	-	0	Parent=Os11t0683500-02
Chr11	irgsp1_rep	CDS	27651793	27651922	.	-	0	Parent=Os11t0683500-02
Chr11	irgsp1_rep	CDS	27651256	27651437	.	-	2	Parent=Os11t0683500-02
Chr11	irgsp1_rep	three_prime_UTR	27651185	27651255	.	-	.	Parent=Os11t0683500-02
Chr11	irgsp1_rep	three_prime_UTR	27651032	27651098	.	-	.	Parent=Os11t0683500-02
Chr11	irgsp1_rep	three_prime_UTR	27649520	27649630	.	-	.	Parent=Os11t0683500-02
Chr11	irgsp1_rep	three_prime_UTR	27648703	27649441	.	-	.	Parent=Os11t0683500-02
Chr11	irgsp1_rep	mRNA	27649056	27649811	.	+	.	ID=Os11t0683600-00;Name=Os11t0683600-00;Locus_id=Os11g0683600;Note=Similar to predicted protein.;Transcript_evidence=EU962953 (DDBJ);ORF_evidence=A3CDU4 (UniProt);InterPro=Protein of unknown function DUF538 (IPR007493);TENOR=Os11t0683600-00;KEGG=Os11t0683600-00
Chr11	irgsp1_rep	five_prime_UTR	27649056	27649076	.	+	.	Parent=Os11t0683600-00
Chr11	irgsp1_rep	CDS	27649077	27649583	.	+	0	Parent=Os11t0683600-00
Chr11	irgsp1_rep	three_prime_UTR	27649584	27649811	.	+	.	Parent=Os11t0683600-00
Chr11	irgsp1_rep	mRNA	27656251	27658409	.	-	.	ID=Os11t0683700-01;Name=Os11t0683700-01;Locus_id=Os11g0683700;CGSNL Gene Symbol=PME33;CGSNL Gene Name=PECTIN METHYLESTERASE 33;Oryzabase Gene Symbol Synonym(s)=OsPME33;Oryzabase Gene Name Synonym(s)=pectin methylesterase 33;Note=Pectin lyase fold domain containing protein.;Transcript_evidence=AK072863 (DDBJ%2C Best hit),AK100113 (DDBJ%2C Best hit);ORF_evidence=A2ZGQ8 (UniProt);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),Pectinesterase%2C active site (IPR018040);NIAS_FLcDNA=J023143K08,J023006A20;Oryzabase=13197;TENOR=Os11t0683700-01;KEGG=Os11t0683700-01
Chr11	irgsp1_rep	five_prime_UTR	27658369	27658409	.	-	.	Parent=Os11t0683700-01
Chr11	irgsp1_rep	CDS	27657173	27658368	.	-	0	Parent=Os11t0683700-01
Chr11	irgsp1_rep	CDS	27656590	27656851	.	-	1	Parent=Os11t0683700-01
Chr11	irgsp1_rep	three_prime_UTR	27656251	27656589	.	-	.	Parent=Os11t0683700-01
Chr11	irgsp1_rep	mRNA	27660470	27662654	.	-	.	ID=Os11t0683800-01;Name=Os11t0683800-01;Locus_id=Os11g0683800;CGSNL Gene Symbol=PME34;CGSNL Gene Name=PECTIN METHYLESTERASE 34;Oryzabase Gene Symbol Synonym(s)=OsPME34;Oryzabase Gene Name Synonym(s)=pectin methylesterase 34;Note=Pectin lyase fold/virulence factor domain containing protein.;Transcript_evidence=AK100871 (DDBJ%2C Best hit);ORF_evidence=Q2QZK0 (UniProt);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),Pectinesterase%2C active site (IPR018040);NIAS_FLcDNA=J023125E05;Oryzabase=13198;Expression=AK100871;TENOR=Os11t0683800-01;KEGG=Os11t0683800-01
Chr11	irgsp1_rep	five_prime_UTR	27662431	27662654	.	-	.	Parent=Os11t0683800-01
Chr11	irgsp1_rep	five_prime_UTR	27662360	27662360	.	-	.	Parent=Os11t0683800-01
Chr11	irgsp1_rep	CDS	27661320	27662359	.	-	0	Parent=Os11t0683800-01
Chr11	irgsp1_rep	CDS	27660722	27660953	.	-	1	Parent=Os11t0683800-01
Chr11	irgsp1_rep	three_prime_UTR	27660470	27660721	.	-	.	Parent=Os11t0683800-01
Chr11	irgsp1_rep	mRNA	27660471	27662609	.	-	.	ID=Os11t0683800-02;Name=Os11t0683800-02;Locus_id=Os11g0683800;CGSNL Gene Symbol=PME34;CGSNL Gene Name=PECTIN METHYLESTERASE 34;Oryzabase Gene Symbol Synonym(s)=OsPME34;Oryzabase Gene Name Synonym(s)=pectin methylesterase 34;Note=Pectin lyase fold/virulence factor domain containing protein.;Transcript_evidence=AK070275 (DDBJ%2C Best hit);ORF_evidence=Q2QZK0 (UniProt);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),Pectinesterase%2C active site (IPR018040);NIAS_FLcDNA=J023049I04;Oryzabase=13198;Expression=AK070275;TENOR=Os11t0683800-02;KEGG=Os11t0683800-02
Chr11	irgsp1_rep	five_prime_UTR	27662600	27662609	.	-	.	Parent=Os11t0683800-02
Chr11	irgsp1_rep	CDS	27661320	27662599	.	-	0	Parent=Os11t0683800-02
Chr11	irgsp1_rep	CDS	27660722	27660953	.	-	1	Parent=Os11t0683800-02
Chr11	irgsp1_rep	three_prime_UTR	27660471	27660721	.	-	.	Parent=Os11t0683800-02
Chr11	irgsp1_rep	mRNA	27670321	27673334	.	-	.	ID=Os11t0684000-01;Name=Os11t0684000-01;Locus_id=Os11g0684000;CGSNL Gene Symbol=JAMYB;CGSNL Gene Name=JA-REGULATED MYB TRANSCRIPTION FACTOR;Oryzabase Gene Symbol Synonym(s)=OsJAmyb%2C JAmyb%2C OsJAMyb%2C OsMYB21%2C MYB21;Oryzabase Gene Name Synonym(s)=JA-regulated myb transcription factor;Note=Similar to Transcription factor MYB21 (Myb-related protein 21) (AtMYB21) (Myb homolog 3) (AtMyb3).;Transcript_evidence=AK069082 (DDBJ%2C Best hit);ORF_evidence=Q9ARI8 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J023005A19;Oryzabase=10231;Expression=AK069082;TENOR=Os11t0684000-01;KEGG=Os11t0684000-01
Chr11	irgsp1_rep	five_prime_UTR	27673192	27673334	.	-	.	Parent=Os11t0684000-01
Chr11	irgsp1_rep	CDS	27673008	27673191	.	-	0	Parent=Os11t0684000-01
Chr11	irgsp1_rep	CDS	27672259	27672388	.	-	2	Parent=Os11t0684000-01
Chr11	irgsp1_rep	CDS	27670722	27671265	.	-	1	Parent=Os11t0684000-01
Chr11	irgsp1_rep	three_prime_UTR	27670321	27670721	.	-	.	Parent=Os11t0684000-01
Chr11	irgsp1_rep	mRNA	27683780	27695070	.	-	.	ID=Os11t0684100-01;Name=Os11t0684100-01;Locus_id=Os11g0684100;CGSNL Gene Symbol=WRKY125;CGSNL Gene Name=WRKY GENE 125;Oryzabase Gene Symbol Synonym(s)=OsWRKY125;Note=NB-ARC domain containing protein.;Transcript_evidence=AK121102 (DDBJ%2C Best hit);ORF_evidence=Q6IEP0 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J023069N11;Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=9227;Expression=AK121102;TENOR=Os11t0684100-01;KEGG=Os11t0684100-01
Chr11	irgsp1_rep	five_prime_UTR	27694806	27695070	.	-	.	Parent=Os11t0684100-01
Chr11	irgsp1_rep	five_prime_UTR	27690182	27690494	.	-	.	Parent=Os11t0684100-01
Chr11	irgsp1_rep	five_prime_UTR	27690036	27690046	.	-	.	Parent=Os11t0684100-01
Chr11	irgsp1_rep	CDS	27688927	27690035	.	-	0	Parent=Os11t0684100-01
Chr11	irgsp1_rep	CDS	27686156	27688291	.	-	1	Parent=Os11t0684100-01
Chr11	irgsp1_rep	CDS	27684382	27684739	.	-	1	Parent=Os11t0684100-01
Chr11	irgsp1_rep	three_prime_UTR	27683780	27684381	.	-	.	Parent=Os11t0684100-01
Chr11	irgsp1_rep	mRNA	27683640	27690288	.	-	.	ID=Os11t0684100-02;Name=Os11t0684100-02;Locus_id=Os11g0684100;CGSNL Gene Symbol=WRKY125;CGSNL Gene Name=WRKY GENE 125;Oryzabase Gene Symbol Synonym(s)=OsWRKY125;Note=NB-ARC domain containing protein.;Transcript_evidence=AK066053 (DDBJ%2C Best hit);ORF_evidence=Q6IEP0 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013052I15;Oryzabase=9227;Expression=AK066053;TENOR=Os11t0684100-02;KEGG=Os11t0684100-02
Chr11	irgsp1_rep	five_prime_UTR	27690182	27690288	.	-	.	Parent=Os11t0684100-02
Chr11	irgsp1_rep	five_prime_UTR	27690036	27690046	.	-	.	Parent=Os11t0684100-02
Chr11	irgsp1_rep	CDS	27688927	27690035	.	-	0	Parent=Os11t0684100-02
Chr11	irgsp1_rep	CDS	27686156	27688291	.	-	1	Parent=Os11t0684100-02
Chr11	irgsp1_rep	CDS	27684382	27684739	.	-	1	Parent=Os11t0684100-02
Chr11	irgsp1_rep	three_prime_UTR	27684116	27684381	.	-	.	Parent=Os11t0684100-02
Chr11	irgsp1_rep	three_prime_UTR	27683640	27683911	.	-	.	Parent=Os11t0684100-02
Chr11	irgsp1_rep	mRNA	27686517	27689972	.	+	.	ID=Os11t0684400-00;Name=Os11t0684400-00;Locus_id=Os11g0684400;Note=Hypothetical protein.;Transcript_evidence=tplb0061j05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0684400-00
Chr11	irgsp1_rep	five_prime_UTR	27686517	27687100	.	+	.	Parent=Os11t0684400-00
Chr11	irgsp1_rep	five_prime_UTR	27687157	27687184	.	+	.	Parent=Os11t0684400-00
Chr11	irgsp1_rep	CDS	27687185	27687622	.	+	0	Parent=Os11t0684400-00
Chr11	irgsp1_rep	three_prime_UTR	27687623	27688258	.	+	.	Parent=Os11t0684400-00
Chr11	irgsp1_rep	three_prime_UTR	27688895	27689292	.	+	.	Parent=Os11t0684400-00
Chr11	irgsp1_rep	three_prime_UTR	27689573	27689972	.	+	.	Parent=Os11t0684400-00
Chr11	irgsp1_rep	mRNA	27703769	27707310	.	-	.	ID=Os11t0684700-01;Name=Os11t0684700-01;Locus_id=Os11g0684700;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=AK287819 (DDBJ%2C Best hit);ORF_evidence=Q2QZJ6 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J065182E18;TENOR=Os11t0684700-01;KEGG=Os11t0684700-01
Chr11	irgsp1_rep	five_prime_UTR	27707214	27707310	.	-	.	Parent=Os11t0684700-01
Chr11	irgsp1_rep	CDS	27706375	27707213	.	-	0	Parent=Os11t0684700-01
Chr11	irgsp1_rep	CDS	27703916	27706073	.	-	1	Parent=Os11t0684700-01
Chr11	irgsp1_rep	three_prime_UTR	27703769	27703915	.	-	.	Parent=Os11t0684700-01
Chr11	irgsp1_rep	mRNA	27711995	27715773	.	-	.	ID=Os11t0685100-00;Name=Os11t0685100-00;Locus_id=Os11g0685100;Note=Hypothetical gene.;Transcript_evidence=AK103056 (DDBJ%2C Secondary hit);ORF_evidence=B8ANA7 (UniProt);Expression=AK103056;TENOR=Os11t0685100-00;KEGG=Os11t0685100-00
Chr11	irgsp1_rep	five_prime_UTR	27715602	27715773	.	-	.	Parent=Os11t0685100-00
Chr11	irgsp1_rep	CDS	27715317	27715601	.	-	0	Parent=Os11t0685100-00
Chr11	irgsp1_rep	CDS	27715143	27715205	.	-	0	Parent=Os11t0685100-00
Chr11	irgsp1_rep	three_prime_UTR	27715134	27715142	.	-	.	Parent=Os11t0685100-00
Chr11	irgsp1_rep	three_prime_UTR	27711995	27715044	.	-	.	Parent=Os11t0685100-00
Chr11	irgsp1_rep	mRNA	27717464	27721075	.	+	.	ID=Os11t0685200-01;Name=Os11t0685200-01;Locus_id=Os11g0685200;Note=Hypothetical protein.;Transcript_evidence=AK119268 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-130-A08;Expression=AK119268;TENOR=Os11t0685200-01;KEGG=Os11t0685200-01
Chr11	irgsp1_rep	five_prime_UTR	27717464	27717526	.	+	.	Parent=Os11t0685200-01
Chr11	irgsp1_rep	CDS	27717527	27717802	.	+	0	Parent=Os11t0685200-01
Chr11	irgsp1_rep	three_prime_UTR	27717803	27717929	.	+	.	Parent=Os11t0685200-01
Chr11	irgsp1_rep	three_prime_UTR	27718154	27720131	.	+	.	Parent=Os11t0685200-01
Chr11	irgsp1_rep	three_prime_UTR	27720810	27721075	.	+	.	Parent=Os11t0685200-01
Chr11	irgsp1_rep	mRNA	27723836	27726007	.	-	.	ID=Os11t0685300-01;Name=Os11t0685300-01;Locus_id=Os11g0685300;Note=Hypothetical conserved gene.;Transcript_evidence=AK108918 (DDBJ%2C Best hit);ORF_evidence=NP_001068472.1 (RefSeq);NIAS_FLcDNA=002-152-H05;Expression=AK108918;TENOR=Os11t0685300-01;KEGG=Os11t0685300-01
Chr11	irgsp1_rep	five_prime_UTR	27725987	27726007	.	-	.	Parent=Os11t0685300-01
Chr11	irgsp1_rep	CDS	27725651	27725986	.	-	0	Parent=Os11t0685300-01
Chr11	irgsp1_rep	CDS	27724286	27724441	.	-	0	Parent=Os11t0685300-01
Chr11	irgsp1_rep	three_prime_UTR	27723836	27724285	.	-	.	Parent=Os11t0685300-01
Chr11	irgsp1_rep	mRNA	27723969	27726283	.	+	.	ID=Os11t0685400-01;Name=Os11t0685400-01;Locus_id=Os11g0685400;Note=Hypothetical conserved gene.;Transcript_evidence=AK066260 (DDBJ%2C Best hit);ORF_evidence=Q2QZH5 (UniProt);NIAS_FLcDNA=J013059H13;Expression=AK066260;TENOR=Os11t0685400-01;KEGG=Os11t0685400-01
Chr11	irgsp1_rep	five_prime_UTR	27723969	27724243	.	+	.	Parent=Os11t0685400-01
Chr11	irgsp1_rep	CDS	27724244	27724354	.	+	0	Parent=Os11t0685400-01
Chr11	irgsp1_rep	CDS	27725221	27725238	.	+	0	Parent=Os11t0685400-01
Chr11	irgsp1_rep	three_prime_UTR	27725239	27726283	.	+	.	Parent=Os11t0685400-01
Chr11	irgsp1_rep	mRNA	27734410	27736198	.	-	.	ID=Os11t0685500-00;Name=Os11t0685500-00;Locus_id=Os11g0685500;Note=Hypothetical protein.;Transcript_evidence=tplb0061j05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0685500-00
Chr11	irgsp1_rep	five_prime_UTR	27735608	27736198	.	-	.	Parent=Os11t0685500-00
Chr11	irgsp1_rep	five_prime_UTR	27735522	27735556	.	-	.	Parent=Os11t0685500-00
Chr11	irgsp1_rep	CDS	27735309	27735521	.	-	0	Parent=Os11t0685500-00
Chr11	irgsp1_rep	three_prime_UTR	27734410	27735308	.	-	.	Parent=Os11t0685500-00
Chr11	irgsp1_rep	mRNA	27735451	27737645	.	+	.	ID=Os11t0685600-00;Name=Os11t0685600-00;Locus_id=Os11g0685600;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QZI8 (UniProt);TENOR=Os11t0685600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	27735451	27736559	.	+	0	Parent=Os11t0685600-00
Chr11	irgsp1_rep	CDS	27737585	27737645	.	+	1	Parent=Os11t0685600-00
Chr11	irgsp1_rep	mRNA	27740507	27741184	.	+	.	ID=Os11t0685700-00;Name=Os11t0685700-00;Locus_id=Os11g0685700;CGSNL Gene Symbol=WRKY61;CGSNL Gene Name=WRKY GENE 61;Oryzabase Gene Symbol Synonym(s)=OsWRKY61%2C OsWRKY103%2C WRKY103;Oryzabase Gene Name Synonym(s)=Rice WRKY gene61;Note=Similar to WRKY transcription factor 61.;Transcript_evidence=DQ863106 (DDBJ);ORF_evidence=Q6IEM0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6597;TENOR=Os11t0685700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	27740507	27740772	.	+	0	Parent=Os11t0685700-00
Chr11	irgsp1_rep	CDS	27740872	27741184	.	+	1	Parent=Os11t0685700-00
Chr11	irgsp1_rep	mRNA	27759888	27761632	.	-	.	ID=Os11t0686100-01;Name=Os11t0686100-01;Locus_id=Os11g0686100;Note=Conserved hypothetical protein.;Transcript_evidence=AK105797 (DDBJ%2C Best hit),AK101125 (DDBJ%2C Best hit);ORF_evidence=B8BNN3 (UniProt);NIAS_FLcDNA=001-203-A07,J033025M22;TENOR=Os11t0686100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	27761627	27761632	.	-	.	Parent=Os11t0686100-01
Chr11	irgsp1_rep	CDS	27760622	27761626	.	-	0	Parent=Os11t0686100-01
Chr11	irgsp1_rep	three_prime_UTR	27759888	27760621	.	-	.	Parent=Os11t0686100-01
Chr11	irgsp1_rep	mRNA	27758164	27761609	.	-	.	ID=Os11t0686100-02;Name=Os11t0686100-02;Locus_id=Os11g0686100;Note=Conserved hypothetical protein.;Transcript_evidence=AK110864 (DDBJ%2C Best hit);ORF_evidence=B8BNN3 (UniProt);NIAS_FLcDNA=002-172-D11;TENOR=Os11t0686100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	27761609	27761609	.	-	.	Parent=Os11t0686100-02
Chr11	irgsp1_rep	CDS	27760622	27761608	.	-	0	Parent=Os11t0686100-02
Chr11	irgsp1_rep	three_prime_UTR	27760516	27760621	.	-	.	Parent=Os11t0686100-02
Chr11	irgsp1_rep	three_prime_UTR	27758164	27759041	.	-	.	Parent=Os11t0686100-02
Chr11	irgsp1_rep	mRNA	27784700	27785295	.	-	.	ID=Os11t0686250-00;Name=Os11t0686250-00;Locus_id=Os11g0686250;CGSNL Gene Symbol=WRKY63;CGSNL Gene Name=WRKY GENE 63;Oryzabase Gene Symbol Synonym(s)=OsWRKY63;Note=DNA-binding WRKY domain containing protein.;Transcript_evidence=FP101349 (DDBJ);ORF_evidence=B9G8T2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);Oryzabase=6578;TENOR=Os11t0686250-00
Chr11	irgsp1_rep	five_prime_UTR	27785102	27785295	.	-	.	Parent=Os11t0686250-00
Chr11	irgsp1_rep	CDS	27784700	27785101	.	-	0	Parent=Os11t0686250-00
Chr11	irgsp1_rep	mRNA	27788716	27792722	.	-	.	ID=Os11t0686400-00;Name=Os11t0686400-00;Locus_id=Os11g0686400;CGSNL Gene Symbol=WRKY41;CGSNL Gene Name=WRKY GENE 41;Oryzabase Gene Symbol Synonym(s)=OsWRKY41;Oryzabase Gene Name Synonym(s)=Rice WRKY gene41;Note=Similar to WRKY transcription factor 41.;Transcript_evidence=AK369350 (DDBJ);ORF_evidence=Q6IEP0 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6555;TENOR=Os11t0686400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	27792255	27792722	.	-	0	Parent=Os11t0686400-00
Chr11	irgsp1_rep	CDS	27791624	27791949	.	-	0	Parent=Os11t0686400-00
Chr11	irgsp1_rep	CDS	27788716	27790870	.	-	1	Parent=Os11t0686400-00
Chr11	irgsp1_rep	mRNA	27789087	27791913	.	+	.	ID=Os11t0686450-00;Name=Os11t0686450-00;Locus_id=Os11g0686450;Note=Hypothetical protein.;Transcript_evidence=tplb0061j05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0686450-00
Chr11	irgsp1_rep	five_prime_UTR	27789087	27789679	.	+	.	Parent=Os11t0686450-00
Chr11	irgsp1_rep	five_prime_UTR	27789736	27789763	.	+	.	Parent=Os11t0686450-00
Chr11	irgsp1_rep	CDS	27789764	27790084	.	+	0	Parent=Os11t0686450-00
Chr11	irgsp1_rep	three_prime_UTR	27790085	27790831	.	+	.	Parent=Os11t0686450-00
Chr11	irgsp1_rep	three_prime_UTR	27791585	27791913	.	+	.	Parent=Os11t0686450-00
Chr11	irgsp1_rep	mRNA	27793778	27797821	.	+	.	ID=Os11t0686500-01;Name=Os11t0686500-01;Locus_id=Os11g0686500;Note=NB-ARC domain containing protein.;Transcript_evidence=AK066559 (DDBJ%2C Best hit);ORF_evidence=Q2QZJ6 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013074H11;Expression=AK066559;TENOR=Os11t0686500-01;KEGG=Os11t0686500-01
Chr11	irgsp1_rep	five_prime_UTR	27793778	27793836	.	+	.	Parent=Os11t0686500-01
Chr11	irgsp1_rep	CDS	27793837	27794675	.	+	0	Parent=Os11t0686500-01
Chr11	irgsp1_rep	CDS	27794923	27797377	.	+	1	Parent=Os11t0686500-01
Chr11	irgsp1_rep	three_prime_UTR	27797378	27797821	.	+	.	Parent=Os11t0686500-01
Chr11	irgsp1_rep	mRNA	27809097	27818431	.	-	.	ID=Os11t0686900-00;Name=Os11t0686900-00;Locus_id=Os11g0686900;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QZH5 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os11t0686900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	27817541	27818431	.	-	0	Parent=Os11t0686900-00
Chr11	irgsp1_rep	CDS	27812255	27813642	.	-	0	Parent=Os11t0686900-00
Chr11	irgsp1_rep	CDS	27809097	27809265	.	-	1	Parent=Os11t0686900-00
Chr11	irgsp1_rep	mRNA	27812454	27818224	.	+	.	ID=Os11t0687001-00;Name=Os11t0687001-00;Locus_id=Os11g0687001;Note=Hypothetical protein.;Transcript_evidence=tplb0021d08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0687001-00
Chr11	irgsp1_rep	five_prime_UTR	27812454	27814380	.	+	.	Parent=Os11t0687001-00
Chr11	irgsp1_rep	five_prime_UTR	27817487	27817768	.	+	.	Parent=Os11t0687001-00
Chr11	irgsp1_rep	five_prime_UTR	27817906	27817919	.	+	.	Parent=Os11t0687001-00
Chr11	irgsp1_rep	CDS	27817920	27818153	.	+	0	Parent=Os11t0687001-00
Chr11	irgsp1_rep	three_prime_UTR	27818154	27818224	.	+	.	Parent=Os11t0687001-00
Chr11	irgsp1_rep	mRNA	27828727	27835243	.	+	.	ID=Os11t0687100-01;Name=Os11t0687100-01;Locus_id=Os11g0687100;Note=von Willebrand factor%2C type A domain containing protein.;Transcript_evidence=AK065631 (DDBJ%2C Best hit);ORF_evidence=B6SVT8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=von Willebrand factor%2C type A (IPR002035);NIAS_FLcDNA=J013029M23;Expression=AK065631;TENOR=Os11t0687100-01;KEGG=Os11t0687100-01
Chr11	irgsp1_rep	five_prime_UTR	27828727	27828799	.	+	.	Parent=Os11t0687100-01
Chr11	irgsp1_rep	CDS	27828800	27828868	.	+	0	Parent=Os11t0687100-01
Chr11	irgsp1_rep	CDS	27829364	27829810	.	+	0	Parent=Os11t0687100-01
Chr11	irgsp1_rep	CDS	27830613	27831962	.	+	0	Parent=Os11t0687100-01
Chr11	irgsp1_rep	CDS	27834835	27834870	.	+	0	Parent=Os11t0687100-01
Chr11	irgsp1_rep	three_prime_UTR	27834871	27835243	.	+	.	Parent=Os11t0687100-01
Chr11	irgsp1_rep	mRNA	27841513	27843117	.	+	.	ID=Os11t0687200-01;Name=Os11t0687200-01;Locus_id=Os11g0687200;Note=Hypothetical conserved gene.;Transcript_evidence=AK107174 (DDBJ%2C Best hit);ORF_evidence=B8BIG1 (UniProt);NIAS_FLcDNA=002-124-G07;Expression=AK107174;TENOR=Os11t0687200-01;KEGG=Os11t0687200-01
Chr11	irgsp1_rep	five_prime_UTR	27841513	27842067	.	+	.	Parent=Os11t0687200-01
Chr11	irgsp1_rep	CDS	27842068	27842535	.	+	0	Parent=Os11t0687200-01
Chr11	irgsp1_rep	three_prime_UTR	27842536	27843117	.	+	.	Parent=Os11t0687200-01
Chr11	irgsp1_rep	mRNA	27841517	27845125	.	+	.	ID=Os11t0687200-02;Name=Os11t0687200-02;Locus_id=Os11g0687200;Note=von Willebrand factor%2C type A domain containing protein.;Transcript_evidence=AK070289 (DDBJ%2C Best hit);ORF_evidence=B8BIG1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=von Willebrand factor%2C type A (IPR002035);NIAS_FLcDNA=J023050F01;Expression=AK070289;TENOR=Os11t0687200-02;KEGG=Os11t0687200-02
Chr11	irgsp1_rep	five_prime_UTR	27841517	27841586	.	+	.	Parent=Os11t0687200-02
Chr11	irgsp1_rep	CDS	27841587	27841652	.	+	0	Parent=Os11t0687200-02
Chr11	irgsp1_rep	CDS	27842074	27842478	.	+	0	Parent=Os11t0687200-02
Chr11	irgsp1_rep	CDS	27843162	27844418	.	+	0	Parent=Os11t0687200-02
Chr11	irgsp1_rep	CDS	27844743	27844811	.	+	0	Parent=Os11t0687200-02
Chr11	irgsp1_rep	three_prime_UTR	27844812	27845125	.	+	.	Parent=Os11t0687200-02
Chr11	irgsp1_rep	mRNA	27842044	27846793	.	+	.	ID=Os11t0687200-03;Name=Os11t0687200-03;Locus_id=Os11g0687200;Note=Hypothetical conserved gene.;Transcript_evidence=AK289154 (DDBJ%2C Best hit);ORF_evidence=NP_001068482.1 (RefSeq);NIAS_FLcDNA=J090099O14;TENOR=Os11t0687200-03;KEGG=Os11t0687200-03
Chr11	irgsp1_rep	five_prime_UTR	27842044	27842067	.	+	.	Parent=Os11t0687200-03
Chr11	irgsp1_rep	CDS	27842068	27842478	.	+	0	Parent=Os11t0687200-03
Chr11	irgsp1_rep	CDS	27843162	27844418	.	+	0	Parent=Os11t0687200-03
Chr11	irgsp1_rep	CDS	27844743	27844811	.	+	0	Parent=Os11t0687200-03
Chr11	irgsp1_rep	three_prime_UTR	27844812	27846793	.	+	.	Parent=Os11t0687200-03
Chr11	irgsp1_rep	mRNA	27884593	27890936	.	+	.	ID=Os11t0687800-01;Name=Os11t0687800-01;Locus_id=Os11g0687800;Note=NB-ARC domain containing protein.;Transcript_evidence=AK103221 (DDBJ%2C Best hit);ORF_evidence=B9GB83 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J033122P06;Expression=AK103221;TENOR=Os11t0687800-01;KEGG=Os11t0687800-01
Chr11	irgsp1_rep	five_prime_UTR	27884593	27884704	.	+	.	Parent=Os11t0687800-01
Chr11	irgsp1_rep	five_prime_UTR	27885340	27885375	.	+	.	Parent=Os11t0687800-01
Chr11	irgsp1_rep	CDS	27885376	27886175	.	+	0	Parent=Os11t0687800-01
Chr11	irgsp1_rep	CDS	27888287	27888932	.	+	1	Parent=Os11t0687800-01
Chr11	irgsp1_rep	three_prime_UTR	27888933	27890463	.	+	.	Parent=Os11t0687800-01
Chr11	irgsp1_rep	three_prime_UTR	27890557	27890936	.	+	.	Parent=Os11t0687800-01
Chr11	irgsp1_rep	mRNA	27884617	27890894	.	+	.	ID=Os11t0687800-02;Name=Os11t0687800-02;Locus_id=Os11g0687800;Note=NB-ARC domain containing protein.;Transcript_evidence=AK068269 (DDBJ%2C Best hit);ORF_evidence=B9GB83 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013148H06;Expression=AK068269;TENOR=Os11t0687800-02;KEGG=Os11t0687800-02
Chr11	irgsp1_rep	five_prime_UTR	27884617	27884696	.	+	.	Parent=Os11t0687800-02
Chr11	irgsp1_rep	five_prime_UTR	27885335	27885375	.	+	.	Parent=Os11t0687800-02
Chr11	irgsp1_rep	CDS	27885376	27886175	.	+	0	Parent=Os11t0687800-02
Chr11	irgsp1_rep	CDS	27888287	27888932	.	+	1	Parent=Os11t0687800-02
Chr11	irgsp1_rep	three_prime_UTR	27888933	27890463	.	+	.	Parent=Os11t0687800-02
Chr11	irgsp1_rep	three_prime_UTR	27890557	27890894	.	+	.	Parent=Os11t0687800-02
Chr11	irgsp1_rep	mRNA	27894235	27901084	.	+	.	ID=Os11t0687900-01;Name=Os11t0687900-01;Locus_id=Os11g0687900;Note=Similar to MLA10.;Transcript_evidence=AK103659 (DDBJ%2C Best hit);ORF_evidence=B9G596 (UniProt);NIAS_FLcDNA=J033135H03;Expression=AK103659;TENOR=Os11t0687900-01;KEGG=Os11t0687900-01
Chr11	irgsp1_rep	five_prime_UTR	27894235	27894559	.	+	.	Parent=Os11t0687900-01
Chr11	irgsp1_rep	CDS	27894560	27895117	.	+	0	Parent=Os11t0687900-01
Chr11	irgsp1_rep	three_prime_UTR	27895118	27895838	.	+	.	Parent=Os11t0687900-01
Chr11	irgsp1_rep	three_prime_UTR	27900364	27901084	.	+	.	Parent=Os11t0687900-01
Chr11	irgsp1_rep	mRNA	27908607	27909044	.	+	.	ID=Os11t0688000-00;Name=Os11t0688000-00;Locus_id=Os11g0688000;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001068485.1 (RefSeq);TENOR=Os11t0688000-00
Chr11	irgsp1_rep	CDS	27908607	27909044	.	+	0	Parent=Os11t0688000-00
Chr11	irgsp1_rep	mRNA	27911525	27914393	.	-	.	ID=Os11t0688200-01;Name=Os11t0688200-01;Locus_id=Os11g0688200;Note=Conserved hypothetical protein.;Transcript_evidence=AK119394 (DDBJ%2C Best hit);ORF_evidence=Q2QZG0 (UniProt);NIAS_FLcDNA=001-132-D05;TENOR=Os11t0688200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	27912656	27914393	.	-	.	Parent=Os11t0688200-01
Chr11	irgsp1_rep	CDS	27912344	27912655	.	-	0	Parent=Os11t0688200-01
Chr11	irgsp1_rep	three_prime_UTR	27911525	27912343	.	-	.	Parent=Os11t0688200-01
Chr11	irgsp1_rep	mRNA	27978644	27979861	.	-	.	ID=Os11t0688832-00;Name=Os11t0688832-00;Locus_id=Os11g0688832;Note=Similar to Leucine Rich Repeat family protein.;Transcript_evidence=AB510262 (DDBJ%2C Best hit);ORF_evidence=Q2QZF2 (UniProt);TENOR=Os11t0688832-00
Chr11	irgsp1_rep	CDS	27978644	27979861	.	-	0	Parent=Os11t0688832-00
Chr11	irgsp1_rep	mRNA	27981132	27991195	.	-	.	ID=Os11t0689000-01;Name=Os11t0689000-01;Locus_id=Os11g0689000;CGSNL Gene Symbol=PIK%2C PIKM;CGSNL Gene Name=PYRICULARIA ORYZAE RESISTANCE K%2C PYRICULARIA ORYZAE RESISTANCE KM;Oryzabase Gene Symbol Synonym(s)=Pik%2C RMg8%2C Pi-k%2C Pik-2%2C Pik-1%2C Pik1%2C Pik2%2C Pik-H4%2C Pik-m%2C Pi-m%2C Pi-km%2C Pikm%2C Pi m%2C Pikm1-TS%2C Pikm2-TS%2C Pi-km1%2C Pi-km2;Oryzabase Gene Name Synonym(s)=Pyricularia oryzae resistance-k%2C Magnaporthe grisea resistance-k%2C Blast resistance k%2C Pyricularia oryzae resistance KM%2C Magnaporthe grisea resistance km%2C Blast resistance km;Note=Similar to Leucine Rich Repeat family protein.;Transcript_evidence=AK067598 (DDBJ%2C Best hit);ORF_evidence=Q2QZF2 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);NIAS_FLcDNA=J013107D23;Oryzabase=6390,937;TENOR=Os11t0689000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	27990683	27991195	.	-	.	Parent=Os11t0689000-01
Chr11	irgsp1_rep	five_prime_UTR	27990516	27990585	.	-	.	Parent=Os11t0689000-01
Chr11	irgsp1_rep	CDS	27990432	27990515	.	-	0	Parent=Os11t0689000-01
Chr11	irgsp1_rep	CDS	27981132	27981659	.	-	0	Parent=Os11t0689000-01
Chr11	irgsp1_rep	mRNA	27984697	27989128	.	+	.	ID=Os11t0689100-01;Name=Os11t0689100-01;Locus_id=Os11g0689100;CGSNL Gene Symbol=PIK%2C PIKM;CGSNL Gene Name=PYRICULARIA ORYZAE RESISTANCE K%2C PYRICULARIA ORYZAE RESISTANCE KM;Oryzabase Gene Symbol Synonym(s)=Pik%2C RMg8%2C Pi-k%2C Pik-2%2C Pik-1%2C Pik1%2C Pik2%2C Pik-H4%2C Pik-m%2C Pi-m%2C Pi-km%2C Pikm%2C Pi m%2C Pikm1-TS%2C Pikm2-TS%2C Pi-km1%2C Pi-km2;Oryzabase Gene Name Synonym(s)=Pyricularia oryzae resistance-k%2C Magnaporthe grisea resistance-k%2C Blast resistance k%2C Pyricularia oryzae resistance KM%2C Magnaporthe grisea resistance km%2C Blast resistance km;Note=NB-ARC domain containing protein.;Transcript_evidence=AK073759 (DDBJ%2C Best hit);ORF_evidence=D5L9H8 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182),ATPase%2C AAA+ type%2C core (IPR003593);NIAS_FLcDNA=J033065D18;Oryzabase=6390,937;Expression=AK073759;TENOR=Os11t0689100-01;KEGG=Os11t0689100-01
Chr11	irgsp1_rep	five_prime_UTR	27984697	27984951	.	+	.	Parent=Os11t0689100-01
Chr11	irgsp1_rep	five_prime_UTR	27985450	27985582	.	+	.	Parent=Os11t0689100-01
Chr11	irgsp1_rep	CDS	27985583	27986622	.	+	0	Parent=Os11t0689100-01
Chr11	irgsp1_rep	CDS	27986780	27988874	.	+	1	Parent=Os11t0689100-01
Chr11	irgsp1_rep	three_prime_UTR	27988875	27989128	.	+	.	Parent=Os11t0689100-01
Chr11	irgsp1_rep	mRNA	27985563	27987984	.	+	.	ID=Os11t0689100-02;Name=Os11t0689100-02;Locus_id=Os11g0689100;CGSNL Gene Symbol=PIK%2C PIKM;CGSNL Gene Name=PYRICULARIA ORYZAE RESISTANCE K%2C PYRICULARIA ORYZAE RESISTANCE KM;Oryzabase Gene Symbol Synonym(s)=Pik%2C RMg8%2C Pi-k%2C Pik-2%2C Pik-1%2C Pik1%2C Pik2%2C Pik-H4%2C Pik-m%2C Pi-m%2C Pi-km%2C Pikm%2C Pi m%2C Pikm1-TS%2C Pikm2-TS%2C Pi-km1%2C Pi-km2;Oryzabase Gene Name Synonym(s)=Pyricularia oryzae resistance-k%2C Magnaporthe grisea resistance-k%2C Blast resistance k%2C Pyricularia oryzae resistance KM%2C Magnaporthe grisea resistance km%2C Blast resistance km;Note=Similar to NBS-LRR class disease resistance protein.;Transcript_evidence=AK108692 (DDBJ%2C Best hit);ORF_evidence=D5L9H8 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=002-149-D06;Oryzabase=6390,937;TENOR=Os11t0689100-02
Chr11	irgsp1_rep	five_prime_UTR	27985563	27985582	.	+	.	Parent=Os11t0689100-02
Chr11	irgsp1_rep	CDS	27985583	27986622	.	+	0	Parent=Os11t0689100-02
Chr11	irgsp1_rep	CDS	27986780	27987984	.	+	1	Parent=Os11t0689100-02
Chr11	irgsp1_rep	mRNA	27992589	27997003	.	-	.	ID=Os11t0689300-01;Name=Os11t0689300-01;Locus_id=Os11g0689300;Oryzabase Gene Symbol Synonym(s)=OsPCBP;Oryzabase Gene Name Synonym(s)=pollen-specific calmodulin-binding protein;Note=Similar to Calmodulin-binding protein.;Transcript_evidence=AK069979 (DDBJ%2C Best hit);ORF_evidence=Q7XJB9 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J023035D09;Oryzabase=12531;TENOR=Os11t0689300-01
Chr11	irgsp1_rep	five_prime_UTR	27996962	27997003	.	-	.	Parent=Os11t0689300-01
Chr11	irgsp1_rep	CDS	27996785	27996961	.	-	0	Parent=Os11t0689300-01
Chr11	irgsp1_rep	CDS	27994114	27994357	.	-	0	Parent=Os11t0689300-01
Chr11	irgsp1_rep	CDS	27992817	27994021	.	-	2	Parent=Os11t0689300-01
Chr11	irgsp1_rep	CDS	27992589	27992629	.	-	0	Parent=Os11t0689300-01
Chr11	irgsp1_rep	mRNA	27991732	27997001	.	-	.	ID=Os11t0689300-02;Name=Os11t0689300-02;Locus_id=Os11g0689300;Oryzabase Gene Symbol Synonym(s)=OsPCBP;Oryzabase Gene Name Synonym(s)=pollen-specific calmodulin-binding protein;Note=Similar to Calmodulin-binding protein MPCBP.;Transcript_evidence=AK071439 (DDBJ%2C Best hit);ORF_evidence=Q7XJB9 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J023093A04;Oryzabase=12531;Expression=AK071439;TENOR=Os11t0689300-02;KEGG=Os11t0689300-02
Chr11	irgsp1_rep	five_prime_UTR	27996962	27997001	.	-	.	Parent=Os11t0689300-02
Chr11	irgsp1_rep	CDS	27996785	27996961	.	-	0	Parent=Os11t0689300-02
Chr11	irgsp1_rep	CDS	27994114	27994357	.	-	0	Parent=Os11t0689300-02
Chr11	irgsp1_rep	CDS	27992817	27994021	.	-	2	Parent=Os11t0689300-02
Chr11	irgsp1_rep	CDS	27992482	27992629	.	-	0	Parent=Os11t0689300-02
Chr11	irgsp1_rep	CDS	27992045	27992364	.	-	2	Parent=Os11t0689300-02
Chr11	irgsp1_rep	three_prime_UTR	27991732	27992044	.	-	.	Parent=Os11t0689300-02
Chr11	irgsp1_rep	mRNA	28001412	28002413	.	+	.	ID=Os11t0689400-00;Name=Os11t0689400-00;Locus_id=Os11g0689400;Oryzabase Gene Symbol Synonym(s)=OsRH40%2C DRH1;Oryzabase Gene Name Synonym(s)=RNA helicase 40;Note=Similar to predicted protein.;Transcript_evidence=CT835640 (DDBJ%2C Best hit);ORF_evidence=NP_974206.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);Oryzabase=19150;TENOR=Os11t0689400-00;KEGG=Os11t0689400-00 (EC:3.6.4.13)
Chr11	irgsp1_rep	five_prime_UTR	28001412	28001437	.	+	.	Parent=Os11t0689400-00
Chr11	irgsp1_rep	CDS	28001438	28001515	.	+	0	Parent=Os11t0689400-00
Chr11	irgsp1_rep	CDS	28001991	28002282	.	+	0	Parent=Os11t0689400-00
Chr11	irgsp1_rep	CDS	28002289	28002308	.	+	2	Parent=Os11t0689400-00
Chr11	irgsp1_rep	three_prime_UTR	28002309	28002413	.	+	.	Parent=Os11t0689400-00
Chr11	irgsp1_rep	mRNA	28005496	28008609	.	+	.	ID=Os11t0689500-01;Name=Os11t0689500-01;Locus_id=Os11g0689500;Note=Conserved hypothetical protein.;Transcript_evidence=AK242805 (DDBJ%2C Best hit);ORF_evidence=NP_001176723.1 (RefSeq);NIAS_FLcDNA=J090060D04;TENOR=Os11t0689500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	28005496	28005824	.	+	.	Parent=Os11t0689500-01
Chr11	irgsp1_rep	five_prime_UTR	28006327	28006354	.	+	.	Parent=Os11t0689500-01
Chr11	irgsp1_rep	CDS	28006355	28006693	.	+	0	Parent=Os11t0689500-01
Chr11	irgsp1_rep	CDS	28006769	28006859	.	+	0	Parent=Os11t0689500-01
Chr11	irgsp1_rep	CDS	28007119	28007170	.	+	2	Parent=Os11t0689500-01
Chr11	irgsp1_rep	CDS	28007573	28008464	.	+	1	Parent=Os11t0689500-01
Chr11	irgsp1_rep	three_prime_UTR	28008465	28008609	.	+	.	Parent=Os11t0689500-01
Chr11	irgsp1_rep	mRNA	28009048	28011861	.	+	.	ID=Os11t0689650-00;Name=Os11t0689650-00;Locus_id=Os11g0689650;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0033p11 (Wheat FLcDNA);ORF_evidence=B8AE59 (UniProt);TENOR=Os11t0689650-00
Chr11	irgsp1_rep	CDS	28009048	28010604	.	+	0	Parent=Os11t0689650-00
Chr11	irgsp1_rep	CDS	28011337	28011861	.	+	0	Parent=Os11t0689650-00
Chr11	irgsp1_rep	mRNA	28031068	28032957	.	+	.	ID=Os11t0689800-01;Name=Os11t0689800-01;Locus_id=Os11g0689800;Note=Non-protein coding transcript.;Transcript_evidence=AK119600 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-117-E04;TENOR=Os11t0689800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	exon	28031068	28032957	.	+	.	Parent=Os11t0689800-01
Chr11	irgsp1_rep	mRNA	28058331	28063814	.	+	.	ID=Os11t0690066-00;Name=Os11t0690066-00;Locus_id=Os11g0690066;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AF327447 (DDBJ%2C Best hit);ORF_evidence=B9FZ86 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=EGF-type aspartate/asparagine hydroxylation site (IPR000152),Protein kinase%2C catalytic domain (IPR000719),Epidermal growth factor-like%2C type 3 (IPR000742),EGF-like calcium-binding (IPR001881),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os11t0690066-00;KEGG=Os11t0690066-00
Chr11	irgsp1_rep	five_prime_UTR	28058331	28058335	.	+	.	Parent=Os11t0690066-00
Chr11	irgsp1_rep	CDS	28058336	28059027	.	+	0	Parent=Os11t0690066-00
Chr11	irgsp1_rep	CDS	28061667	28061929	.	+	1	Parent=Os11t0690066-00
Chr11	irgsp1_rep	CDS	28062302	28062493	.	+	2	Parent=Os11t0690066-00
Chr11	irgsp1_rep	CDS	28062607	28063664	.	+	2	Parent=Os11t0690066-00
Chr11	irgsp1_rep	three_prime_UTR	28063665	28063814	.	+	.	Parent=Os11t0690066-00
Chr11	irgsp1_rep	mRNA	28058495	28063599	.	-	.	ID=Os11t0690154-00;Name=Os11t0690154-00;Locus_id=Os11g0690154;Note=Hypothetical protein.;Transcript_evidence=tplb0049o19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0690154-00
Chr11	irgsp1_rep	five_prime_UTR	28063142	28063599	.	-	.	Parent=Os11t0690154-00
Chr11	irgsp1_rep	CDS	28062776	28063141	.	-	0	Parent=Os11t0690154-00
Chr11	irgsp1_rep	three_prime_UTR	28062613	28062775	.	-	.	Parent=Os11t0690154-00
Chr11	irgsp1_rep	three_prime_UTR	28062235	28062508	.	-	.	Parent=Os11t0690154-00
Chr11	irgsp1_rep	three_prime_UTR	28061721	28062127	.	-	.	Parent=Os11t0690154-00
Chr11	irgsp1_rep	three_prime_UTR	28058495	28059070	.	-	.	Parent=Os11t0690154-00
Chr11	irgsp1_rep	mRNA	28075457	28076938	.	+	.	ID=Os11t0690332-00;Name=Os11t0690332-00;Locus_id=Os11g0690332;Note=Similar to Protein kinase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q53J35 (UniProt);TENOR=Os11t0690332-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	28075457	28076118	.	+	0	Parent=Os11t0690332-00
Chr11	irgsp1_rep	CDS	28076662	28076938	.	+	1	Parent=Os11t0690332-00
Chr11	irgsp1_rep	mRNA	28075487	28079800	.	-	.	ID=Os11t0690466-00;Name=Os11t0690466-00;Locus_id=Os11g0690466;Note=Hypothetical protein.;Transcript_evidence=tplb0049o19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0690466-00
Chr11	irgsp1_rep	five_prime_UTR	28079241	28079800	.	-	.	Parent=Os11t0690466-00
Chr11	irgsp1_rep	CDS	28078815	28079240	.	-	0	Parent=Os11t0690466-00
Chr11	irgsp1_rep	three_prime_UTR	28078802	28078814	.	-	.	Parent=Os11t0690466-00
Chr11	irgsp1_rep	three_prime_UTR	28078238	28078645	.	-	.	Parent=Os11t0690466-00
Chr11	irgsp1_rep	three_prime_UTR	28076751	28076928	.	-	.	Parent=Os11t0690466-00
Chr11	irgsp1_rep	three_prime_UTR	28075487	28076188	.	-	.	Parent=Os11t0690466-00
Chr11	irgsp1_rep	mRNA	28096484	28098045	.	-	.	ID=Os11t0690866-01;Name=Os11t0690866-01;Locus_id=Os11g0690866;Note=Non-protein coding transcript.;Transcript_evidence=AK288762 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090067F13;TENOR=Os11t0690866-01
Chr11	irgsp1_rep	exon	28096484	28098045	.	-	.	Parent=Os11t0690866-01
Chr11	irgsp1_rep	mRNA	28116306	28121906	.	-	.	ID=Os11t0691050-00;Name=Os11t0691050-00;Locus_id=Os11g0691050;Note=Hypothetical protein.;Transcript_evidence=tplb0049o19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0691050-00
Chr11	irgsp1_rep	five_prime_UTR	28121313	28121906	.	-	.	Parent=Os11t0691050-00
Chr11	irgsp1_rep	CDS	28121123	28121312	.	-	0	Parent=Os11t0691050-00
Chr11	irgsp1_rep	CDS	28120982	28121064	.	-	2	Parent=Os11t0691050-00
Chr11	irgsp1_rep	three_prime_UTR	28120909	28120981	.	-	.	Parent=Os11t0691050-00
Chr11	irgsp1_rep	three_prime_UTR	28120478	28120705	.	-	.	Parent=Os11t0691050-00
Chr11	irgsp1_rep	three_prime_UTR	28119221	28119750	.	-	.	Parent=Os11t0691050-00
Chr11	irgsp1_rep	three_prime_UTR	28116306	28117001	.	-	.	Parent=Os11t0691050-00
Chr11	irgsp1_rep	mRNA	28120864	28121925	.	+	.	ID=Os11t0691100-00;Name=Os11t0691100-00;Locus_id=Os11g0691100;Oryzabase Gene Symbol Synonym(s)=OsiWAK1%2C WAK1;Oryzabase Gene Name Synonym(s)=Oryza sativa indica WAK1%2C Oryza sativa indica Wall-Associated kinase 1;Note=Similar to Protein kinase.;Transcript_evidence=ab initio prediction;ORF_evidence=Q53J39 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=9448;TENOR=Os11t0691100-00;KEGG=Os11t0691100-00
Chr11	irgsp1_rep	CDS	28120864	28121925	.	+	0	Parent=Os11t0691100-00
Chr11	irgsp1_rep	mRNA	28138678	28139024	.	-	.	ID=Os11t0691190-00;Name=Os11t0691190-00;Locus_id=Os11g0691190;Note=EF-hand-like domain domain containing protein.;Transcript_evidence=AK249909 (DDBJ);ORF_evidence=Q33AZ2 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand-like domain (IPR011992);TENOR=Os11t0691190-00
Chr11	irgsp1_rep	five_prime_UTR	28138849	28139024	.	-	.	Parent=Os11t0691190-00
Chr11	irgsp1_rep	CDS	28138678	28138848	.	-	0	Parent=Os11t0691190-00
Chr11	irgsp1_rep	mRNA	28142192	28148337	.	+	.	ID=Os11t0691280-00;Name=Os11t0691280-00;Locus_id=Os11g0691280;CGSNL Gene Symbol=RLCK353;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 353;Oryzabase Gene Symbol Synonym(s)=OsRLCK353;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 353;Note=EGF-type aspartate/asparagine hydroxylation site domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9FZ86 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=EGF-type aspartate/asparagine hydroxylation site (IPR000152),Protein kinase%2C catalytic domain (IPR000719),Epidermal growth factor-like%2C type 3 (IPR000742),EGF-like calcium-binding (IPR001881),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EGF-like calcium-binding%2C conserved site (IPR018097),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=19023;TENOR=Os11t0691280-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	28142192	28142826	.	+	0	Parent=Os11t0691280-00
Chr11	irgsp1_rep	CDS	28142955	28143205	.	+	1	Parent=Os11t0691280-00
Chr11	irgsp1_rep	CDS	28144245	28144424	.	+	2	Parent=Os11t0691280-00
Chr11	irgsp1_rep	CDS	28147307	28148337	.	+	2	Parent=Os11t0691280-00
Chr11	irgsp1_rep	mRNA	28163572	28165364	.	+	.	ID=Os11t0691300-00;Name=Os11t0691300-00;Locus_id=Os11g0691300;Note=Similar to Protein kinase.;Transcript_evidence=BT060988 (DDBJ);ORF_evidence=Q53J34 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=EGF-type aspartate/asparagine hydroxylation site (IPR000152),Protein kinase%2C catalytic domain (IPR000719),Epidermal growth factor-like%2C type 3 (IPR000742),EGF-like calcium-binding (IPR001881),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EGF-like calcium-binding%2C conserved site (IPR018097),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os11t0691300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	28163572	28163758	.	+	0	Parent=Os11t0691300-00
Chr11	irgsp1_rep	CDS	28163905	28164063	.	+	2	Parent=Os11t0691300-00
Chr11	irgsp1_rep	CDS	28164193	28165301	.	+	2	Parent=Os11t0691300-00
Chr11	irgsp1_rep	three_prime_UTR	28165302	28165364	.	+	.	Parent=Os11t0691300-00
Chr11	irgsp1_rep	mRNA	28174981	28175691	.	+	.	ID=Os11t0691400-00;Name=Os11t0691400-00;Locus_id=Os11g0691400;Note=Similar to Protein kinase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q53J35 (UniProt);TENOR=Os11t0691400-00
Chr11	irgsp1_rep	CDS	28174981	28175691	.	+	0	Parent=Os11t0691400-00
Chr11	irgsp1_rep	mRNA	28179078	28179995	.	+	.	ID=Os11t0691500-00;Name=Os11t0691500-00;Locus_id=Os11g0691500;Note=Similar to Protein kinase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q53J35 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os11t0691500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	28179078	28179995	.	+	0	Parent=Os11t0691500-00
Chr11	irgsp1_rep	mRNA	28215210	28219238	.	+	.	ID=Os11t0691600-01;Name=Os11t0691600-01;Locus_id=Os11g0691600;Note=Similar to Protein kinase.;Transcript_evidence=AK243129 (DDBJ%2C Best hit);ORF_evidence=Q53J44 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Epidermal growth factor-like (IPR006210);NIAS_FLcDNA=J100029L08;TENOR=Os11t0691600-01;KEGG=Os11t0691600-01
Chr11	irgsp1_rep	five_prime_UTR	28215210	28215261	.	+	.	Parent=Os11t0691600-01
Chr11	irgsp1_rep	CDS	28215262	28215962	.	+	0	Parent=Os11t0691600-01
Chr11	irgsp1_rep	CDS	28218886	28219165	.	+	1	Parent=Os11t0691600-01
Chr11	irgsp1_rep	three_prime_UTR	28219166	28219238	.	+	.	Parent=Os11t0691600-01
Chr11	irgsp1_rep	mRNA	28222036	28222992	.	+	.	ID=Os11t0691650-00;Name=Os11t0691650-00;Locus_id=Os11g0691650;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q53J44 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os11t0691650-00;KEGG=Os11t0691650-00
Chr11	irgsp1_rep	CDS	28222036	28222992	.	+	0	Parent=Os11t0691650-00
Chr11	irgsp1_rep	mRNA	28224356	28226162	.	-	.	ID=Os11t0691700-01;Name=Os11t0691700-01;Locus_id=Os11g0691700;Note=Hypothetical protein.;Transcript_evidence=AK059600 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-030-E05;Expression=AK059600;TENOR=Os11t0691700-01;KEGG=Os11t0691700-01
Chr11	irgsp1_rep	five_prime_UTR	28225249	28226162	.	-	.	Parent=Os11t0691700-01
Chr11	irgsp1_rep	CDS	28224994	28225248	.	-	0	Parent=Os11t0691700-01
Chr11	irgsp1_rep	three_prime_UTR	28224356	28224993	.	-	.	Parent=Os11t0691700-01
Chr11	irgsp1_rep	mRNA	28224646	28228362	.	+	.	ID=Os11t0691800-01;Name=Os11t0691800-01;Locus_id=Os11g0691800;CGSNL Gene Symbol=RLCK354;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 354;Oryzabase Gene Symbol Synonym(s)=OsRLCK354;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 354;Note=Similar to Leucine Rich Repeat family protein%2C expressed.;Transcript_evidence=AK241618 (DDBJ%2C Best hit);ORF_evidence=Q53K07 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J065186F09;Oryzabase=19024;TENOR=Os11t0691800-01;KEGG=Os11t0691800-01 (EC:4.6.1.1)
Chr11	irgsp1_rep	five_prime_UTR	28224646	28224688	.	+	.	Parent=Os11t0691800-01
Chr11	irgsp1_rep	CDS	28224689	28226404	.	+	0	Parent=Os11t0691800-01
Chr11	irgsp1_rep	three_prime_UTR	28226405	28227614	.	+	.	Parent=Os11t0691800-01
Chr11	irgsp1_rep	three_prime_UTR	28227716	28228362	.	+	.	Parent=Os11t0691800-01
Chr11	irgsp1_rep	mRNA	28235261	28240360	.	-	.	ID=Os11t0692000-01;Name=Os11t0692000-01;Locus_id=Os11g0692000;Note=Hypothetical protein.;Transcript_evidence=AK068182 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013134H15;Expression=AK068182;TENOR=Os11t0692000-01;KEGG=Os11t0692000-01
Chr11	irgsp1_rep	five_prime_UTR	28240202	28240360	.	-	.	Parent=Os11t0692000-01
Chr11	irgsp1_rep	CDS	28240061	28240201	.	-	0	Parent=Os11t0692000-01
Chr11	irgsp1_rep	CDS	28239155	28239463	.	-	0	Parent=Os11t0692000-01
Chr11	irgsp1_rep	three_prime_UTR	28235261	28239154	.	-	.	Parent=Os11t0692000-01
Chr11	irgsp1_rep	mRNA	28267192	28267822	.	-	.	ID=Os11t0692400-01;Name=Os11t0692400-01;Locus_id=Os11g0692400;Note=Conserved hypothetical protein.;Transcript_evidence=AK241972 (DDBJ%2C Best hit);ORF_evidence=NP_001176727.1 (RefSeq);NIAS_FLcDNA=J075095P21;TENOR=Os11t0692400-01;KEGG=Os11t0692400-01
Chr11	irgsp1_rep	five_prime_UTR	28267683	28267822	.	-	.	Parent=Os11t0692400-01
Chr11	irgsp1_rep	CDS	28267311	28267682	.	-	0	Parent=Os11t0692400-01
Chr11	irgsp1_rep	three_prime_UTR	28267192	28267310	.	-	.	Parent=Os11t0692400-01
Chr11	irgsp1_rep	mRNA	28255616	28257424	.	-	.	ID=Os11t0692500-00;Name=Os11t0692500-00;Locus_id=Os11g0692500;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK242422 (DDBJ%2C Secondary hit);ORF_evidence=NP_001068499.2 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os11t0692500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	28257423	28257424	.	-	.	Parent=Os11t0692500-00
Chr11	irgsp1_rep	CDS	28256294	28257422	.	-	0	Parent=Os11t0692500-00
Chr11	irgsp1_rep	CDS	28255779	28256182	.	-	2	Parent=Os11t0692500-00
Chr11	irgsp1_rep	three_prime_UTR	28255616	28255778	.	-	.	Parent=Os11t0692500-00
Chr11	irgsp1_rep	mRNA	28321779	28327027	.	-	.	ID=Os11t0693750-00;Name=Os11t0693750-00;Locus_id=Os11g0693750;Note=Hypothetical protein.;Transcript_evidence=tplb0049o19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0693750-00
Chr11	irgsp1_rep	five_prime_UTR	28326420	28327027	.	-	.	Parent=Os11t0693750-00
Chr11	irgsp1_rep	CDS	28325991	28326419	.	-	0	Parent=Os11t0693750-00
Chr11	irgsp1_rep	three_prime_UTR	28325982	28325990	.	-	.	Parent=Os11t0693750-00
Chr11	irgsp1_rep	three_prime_UTR	28325316	28325741	.	-	.	Parent=Os11t0693750-00
Chr11	irgsp1_rep	three_prime_UTR	28324955	28325192	.	-	.	Parent=Os11t0693750-00
Chr11	irgsp1_rep	three_prime_UTR	28321779	28322469	.	-	.	Parent=Os11t0693750-00
Chr11	irgsp1_rep	mRNA	28335198	28338717	.	-	.	ID=Os11t0693800-01;Name=Os11t0693800-01;Locus_id=Os11g0693800;CGSNL Gene Symbol=ACLA3;CGSNL Gene Name=ATP-CITRATE LYASE A3;Oryzabase Gene Symbol Synonym(s)=OsACL-A3%2C ACL-A3;Oryzabase Gene Name Synonym(s)=ATP-citrate lyase A3;Note=Similar to ATP-citrate synthase.;Transcript_evidence=AK061978 (DDBJ%2C Best hit);ORF_evidence=B6TD54 (UniProt);GO=Molecular Function: ATP binding (GO:0005524),Molecular Function: ligase activity (GO:0016874);InterPro=ATP-grasp fold%2C succinyl-CoA synthetase-type (IPR013650),ATP-grasp fold%2C subdomain 2 (IPR013816);NIAS_FLcDNA=001-043-A05;Oryzabase=22934;TENOR=Os11t0693800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	28338579	28338717	.	-	.	Parent=Os11t0693800-01
Chr11	irgsp1_rep	CDS	28338480	28338578	.	-	0	Parent=Os11t0693800-01
Chr11	irgsp1_rep	CDS	28337462	28337638	.	-	0	Parent=Os11t0693800-01
Chr11	irgsp1_rep	CDS	28337129	28337371	.	-	0	Parent=Os11t0693800-01
Chr11	irgsp1_rep	CDS	28336963	28337014	.	-	0	Parent=Os11t0693800-01
Chr11	irgsp1_rep	CDS	28336734	28336847	.	-	2	Parent=Os11t0693800-01
Chr11	irgsp1_rep	CDS	28336578	28336659	.	-	2	Parent=Os11t0693800-01
Chr11	irgsp1_rep	CDS	28336370	28336385	.	-	1	Parent=Os11t0693800-01
Chr11	irgsp1_rep	three_prime_UTR	28336290	28336369	.	-	.	Parent=Os11t0693800-01
Chr11	irgsp1_rep	three_prime_UTR	28336096	28336190	.	-	.	Parent=Os11t0693800-01
Chr11	irgsp1_rep	three_prime_UTR	28335896	28336012	.	-	.	Parent=Os11t0693800-01
Chr11	irgsp1_rep	three_prime_UTR	28335662	28335778	.	-	.	Parent=Os11t0693800-01
Chr11	irgsp1_rep	three_prime_UTR	28335198	28335477	.	-	.	Parent=Os11t0693800-01
Chr11	irgsp1_rep	mRNA	28346622	28347618	.	+	.	ID=Os11t0693900-01;Name=Os11t0693900-01;Locus_id=Os11g0693900;Note=Hypothetical conserved gene.;Transcript_evidence=AK242861 (DDBJ%2C Best hit);ORF_evidence=Q53QC6 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-type fold (IPR016024);NIAS_FLcDNA=J090074G08;TENOR=Os11t0693900-01;KEGG=Os11t0693900-01
Chr11	irgsp1_rep	CDS	28346622	28346691	.	+	0	Parent=Os11t0693900-01
Chr11	irgsp1_rep	CDS	28346794	28346993	.	+	2	Parent=Os11t0693900-01
Chr11	irgsp1_rep	CDS	28347077	28347215	.	+	0	Parent=Os11t0693900-01
Chr11	irgsp1_rep	CDS	28347310	28347485	.	+	2	Parent=Os11t0693900-01
Chr11	irgsp1_rep	three_prime_UTR	28347486	28347618	.	+	.	Parent=Os11t0693900-01
Chr11	irgsp1_rep	mRNA	28356988	28362710	.	+	.	ID=Os11t0694100-01;Name=Os11t0694100-01;Locus_id=Os11g0694100;CGSNL Gene Symbol=WAK123;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 123;Oryzabase Gene Symbol Synonym(s)=OsWAK123;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=AK243536 (DDBJ%2C Best hit);ORF_evidence=Q53QC7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=EGF-type aspartate/asparagine hydroxylation site (IPR000152),Protein kinase%2C catalytic domain (IPR000719),Epidermal growth factor-like%2C type 3 (IPR000742),Serine-threonine/tyrosine-protein kinase (IPR001245),EGF-like calcium-binding (IPR001881),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J100077N09;Oryzabase=6986;TENOR=Os11t0694100-01;KEGG=Os11t0694100-01
Chr11	irgsp1_rep	five_prime_UTR	28356988	28357054	.	+	.	Parent=Os11t0694100-01
Chr11	irgsp1_rep	CDS	28357055	28357743	.	+	0	Parent=Os11t0694100-01
Chr11	irgsp1_rep	CDS	28359530	28359789	.	+	1	Parent=Os11t0694100-01
Chr11	irgsp1_rep	CDS	28360021	28360212	.	+	2	Parent=Os11t0694100-01
Chr11	irgsp1_rep	CDS	28361503	28362494	.	+	2	Parent=Os11t0694100-01
Chr11	irgsp1_rep	three_prime_UTR	28362495	28362710	.	+	.	Parent=Os11t0694100-01
Chr11	irgsp1_rep	mRNA	28357138	28362248	.	-	.	ID=Os11t0694125-00;Name=Os11t0694125-00;Locus_id=Os11g0694125;Note=Hypothetical protein.;Transcript_evidence=tplb0044f04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0694125-00
Chr11	irgsp1_rep	five_prime_UTR	28362027	28362248	.	-	.	Parent=Os11t0694125-00
Chr11	irgsp1_rep	CDS	28361598	28362026	.	-	0	Parent=Os11t0694125-00
Chr11	irgsp1_rep	three_prime_UTR	28361391	28361597	.	-	.	Parent=Os11t0694125-00
Chr11	irgsp1_rep	three_prime_UTR	28359690	28359822	.	-	.	Parent=Os11t0694125-00
Chr11	irgsp1_rep	three_prime_UTR	28358136	28358321	.	-	.	Parent=Os11t0694125-00
Chr11	irgsp1_rep	three_prime_UTR	28357138	28357722	.	-	.	Parent=Os11t0694125-00
Chr11	irgsp1_rep	mRNA	28364680	28368250	.	-	.	ID=Os11t0694150-01;Name=Os11t0694150-01;Locus_id=Os11g0694150;Note=Hypothetical gene.;Transcript_evidence=AK288987 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090086J09;TENOR=Os11t0694150-01;KEGG=Os11t0694150-01
Chr11	irgsp1_rep	five_prime_UTR	28368079	28368250	.	-	.	Parent=Os11t0694150-01
Chr11	irgsp1_rep	CDS	28367848	28368078	.	-	0	Parent=Os11t0694150-01
Chr11	irgsp1_rep	three_prime_UTR	28364680	28367847	.	-	.	Parent=Os11t0694150-01
Chr11	irgsp1_rep	mRNA	28375368	28377696	.	-	.	ID=Os11t0694500-01;Name=Os11t0694500-01;Locus_id=Os11g0694500;Note=Hypothetical protein.;Transcript_evidence=AK109810 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-147-G09;Expression=AK109810;TENOR=Os11t0694500-01;KEGG=Os11t0694500-01
Chr11	irgsp1_rep	five_prime_UTR	28376374	28377696	.	-	.	Parent=Os11t0694500-01
Chr11	irgsp1_rep	CDS	28376098	28376373	.	-	0	Parent=Os11t0694500-01
Chr11	irgsp1_rep	three_prime_UTR	28375368	28376097	.	-	.	Parent=Os11t0694500-01
Chr11	irgsp1_rep	mRNA	28407554	28409356	.	-	.	ID=Os11t0695000-01;Name=Os11t0695000-01;Locus_id=Os11g0695000;Note=Similar to Leucine Rich Repeat family protein.;Transcript_evidence=AK242422 (DDBJ%2C Best hit);ORF_evidence=Q53QB7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J080084B12;TENOR=Os11t0695000-01;KEGG=Os11t0695000-01
Chr11	irgsp1_rep	five_prime_UTR	28409355	28409356	.	-	.	Parent=Os11t0695000-01
Chr11	irgsp1_rep	CDS	28408226	28409354	.	-	0	Parent=Os11t0695000-01
Chr11	irgsp1_rep	CDS	28407715	28408118	.	-	2	Parent=Os11t0695000-01
Chr11	irgsp1_rep	three_prime_UTR	28407554	28407714	.	-	.	Parent=Os11t0695000-01
Chr11	irgsp1_rep	mRNA	28423279	28427709	.	-	.	ID=Os11t0695400-01;Name=Os11t0695400-01;Locus_id=Os11g0695400;Note=Hypothetical protein.;Transcript_evidence=AK288485 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090040E08;TENOR=Os11t0695400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	28427081	28427709	.	-	.	Parent=Os11t0695400-01
Chr11	irgsp1_rep	CDS	28426670	28427080	.	-	0	Parent=Os11t0695400-01
Chr11	irgsp1_rep	three_prime_UTR	28423279	28426669	.	-	.	Parent=Os11t0695400-01
Chr11	irgsp1_rep	mRNA	28451238	28454914	.	-	.	ID=Os11t0695800-01;Name=Os11t0695800-01;Locus_id=Os11g0695800;CGSNL Gene Symbol=MRKc;CGSNL Gene Name=MINGHUI RECEPTOR KINASE C;Oryzabase Gene Symbol Synonym(s)=MRKc%2C RKc%2C TRKc;Oryzabase Gene Name Synonym(s)=LRR receptor kinase-like protein c%2C RK protein c%2C receptor-kinase gene c in Minghui 63%2C receptor-kinase gene a in Teqing;Note=Similar to Receptor kinase MRKc.;Transcript_evidence=AK111652 (DDBJ%2C Best hit);ORF_evidence=Q2EZ13 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J013134B12;Oryzabase=7227;TENOR=Os11t0695800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	28454817	28454914	.	-	.	Parent=Os11t0695800-01
Chr11	irgsp1_rep	CDS	28453263	28454816	.	-	0	Parent=Os11t0695800-01
Chr11	irgsp1_rep	three_prime_UTR	28451919	28453262	.	-	.	Parent=Os11t0695800-01
Chr11	irgsp1_rep	three_prime_UTR	28451238	28451806	.	-	.	Parent=Os11t0695800-01
Chr11	irgsp1_rep	mRNA	28462112	28469811	.	-	.	ID=Os11t0695900-01;Name=Os11t0695900-01;Locus_id=Os11g0695900;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK101888 (DDBJ%2C Best hit);ORF_evidence=Q2QZ88 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033070M12;Expression=AK101888;TENOR=Os11t0695900-01;KEGG=Os11t0695900-01
Chr11	irgsp1_rep	five_prime_UTR	28469737	28469811	.	-	.	Parent=Os11t0695900-01
Chr11	irgsp1_rep	CDS	28469556	28469736	.	-	0	Parent=Os11t0695900-01
Chr11	irgsp1_rep	CDS	28468834	28469006	.	-	2	Parent=Os11t0695900-01
Chr11	irgsp1_rep	CDS	28468565	28468735	.	-	0	Parent=Os11t0695900-01
Chr11	irgsp1_rep	CDS	28468063	28468173	.	-	0	Parent=Os11t0695900-01
Chr11	irgsp1_rep	CDS	28467897	28467974	.	-	0	Parent=Os11t0695900-01
Chr11	irgsp1_rep	CDS	28467162	28467352	.	-	0	Parent=Os11t0695900-01
Chr11	irgsp1_rep	CDS	28467036	28467096	.	-	1	Parent=Os11t0695900-01
Chr11	irgsp1_rep	CDS	28466788	28466862	.	-	0	Parent=Os11t0695900-01
Chr11	irgsp1_rep	CDS	28466616	28466693	.	-	0	Parent=Os11t0695900-01
Chr11	irgsp1_rep	CDS	28466467	28466529	.	-	0	Parent=Os11t0695900-01
Chr11	irgsp1_rep	CDS	28466314	28466397	.	-	0	Parent=Os11t0695900-01
Chr11	irgsp1_rep	CDS	28465777	28465937	.	-	0	Parent=Os11t0695900-01
Chr11	irgsp1_rep	CDS	28465570	28465609	.	-	1	Parent=Os11t0695900-01
Chr11	irgsp1_rep	CDS	28465348	28465488	.	-	0	Parent=Os11t0695900-01
Chr11	irgsp1_rep	CDS	28465089	28465208	.	-	0	Parent=Os11t0695900-01
Chr11	irgsp1_rep	CDS	28464771	28464989	.	-	0	Parent=Os11t0695900-01
Chr11	irgsp1_rep	CDS	28463882	28464055	.	-	0	Parent=Os11t0695900-01
Chr11	irgsp1_rep	CDS	28463099	28463780	.	-	0	Parent=Os11t0695900-01
Chr11	irgsp1_rep	CDS	28462795	28463000	.	-	2	Parent=Os11t0695900-01
Chr11	irgsp1_rep	CDS	28462558	28462705	.	-	0	Parent=Os11t0695900-01
Chr11	irgsp1_rep	CDS	28462303	28462463	.	-	2	Parent=Os11t0695900-01
Chr11	irgsp1_rep	three_prime_UTR	28462112	28462302	.	-	.	Parent=Os11t0695900-01
Chr11	irgsp1_rep	mRNA	28470506	28471598	.	-	.	ID=Os11t0695975-01;Name=Os11t0695975-01;Locus_id=Os11g0695975;Note=Conserved hypothetical protein.;Transcript_evidence=AK066501 (DDBJ%2C Best hit);ORF_evidence=Q8GRL1 (UniProt);NIAS_FLcDNA=J013074D11;TENOR=Os11t0695975-01
Chr11	irgsp1_rep	five_prime_UTR	28471018	28471598	.	-	.	Parent=Os11t0695975-01
Chr11	irgsp1_rep	CDS	28470730	28471017	.	-	0	Parent=Os11t0695975-01
Chr11	irgsp1_rep	three_prime_UTR	28470506	28470729	.	-	.	Parent=Os11t0695975-01
Chr11	irgsp1_rep	mRNA	28474498	28478023	.	+	.	ID=Os11t0696200-01;Name=Os11t0696200-01;Locus_id=Os11g0696200;RAP-DB Gene Symbol Synonym(s)=EDT1;RAP-DB Gene Name Synonym(s)=Earlier Degraded Tapetum1;CGSNL Gene Symbol=EDT1;CGSNL Gene Name=EARLIER DEGRADED TAPETUM 1;Oryzabase Gene Symbol Synonym(s)=OsACL-A1%2C ACL-A1%2C ACLA1%2C OsEDT1%2C ACLA-2%2C OsACLA-2;Oryzabase Gene Name Synonym(s)=ATP-citrate lyase A1%2C Earlier Degraded Tapetum1;Note=Subunit of ATP-citrate lyase (ACL)%2C Pollen development%2C Regulation of tapetum programmed cell death (PCD);Transcript_evidence=AK069911;ORF_evidence=Q2QZ86;GO=Molecular Function: ATP binding (GO:0005524);InterPro=ATP-grasp fold%2C subdomain 1 (IPR013815),Succinyl-CoA synthetase-like (IPR016102),ATP-grasp fold%2C succinyl-CoA synthetase-type (IPR013650),ATP-citrate synthase%2C citrate-binding domain (IPR032263);NIAS_FLcDNA=J023038A05;Manual Curation=September 20%2C 2019;Literature_PMID=31515447;Oryzabase=22933;TENOR=Os11t0696200-01;KEGG=Os11t0696200-01 (EC:2.3.3.8);Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737)
Chr11	irgsp1_rep	five_prime_UTR	28474498	28474629	.	+	.	Parent=Os11t0696200-01
Chr11	irgsp1_rep	CDS	28474630	28474728	.	+	0	Parent=Os11t0696200-01
Chr11	irgsp1_rep	CDS	28475581	28475757	.	+	0	Parent=Os11t0696200-01
Chr11	irgsp1_rep	CDS	28475848	28476090	.	+	0	Parent=Os11t0696200-01
Chr11	irgsp1_rep	CDS	28476205	28476256	.	+	0	Parent=Os11t0696200-01
Chr11	irgsp1_rep	CDS	28476368	28476482	.	+	2	Parent=Os11t0696200-01
Chr11	irgsp1_rep	CDS	28476557	28476638	.	+	1	Parent=Os11t0696200-01
Chr11	irgsp1_rep	CDS	28476831	28476926	.	+	0	Parent=Os11t0696200-01
Chr11	irgsp1_rep	CDS	28477020	28477121	.	+	0	Parent=Os11t0696200-01
Chr11	irgsp1_rep	CDS	28477205	28477321	.	+	0	Parent=Os11t0696200-01
Chr11	irgsp1_rep	CDS	28477439	28477555	.	+	0	Parent=Os11t0696200-01
Chr11	irgsp1_rep	CDS	28477741	28477812	.	+	0	Parent=Os11t0696200-01
Chr11	irgsp1_rep	three_prime_UTR	28477813	28478023	.	+	.	Parent=Os11t0696200-01
Chr11	irgsp1_rep	mRNA	28483633	28486502	.	+	.	ID=Os11t0696400-00;Name=Os11t0696400-00;Locus_id=Os11g0696400;Note=Glycoside hydrolase%2C family 3%2C N-terminal domain containing protein.;Transcript_evidence=BT086157 (DDBJ);ORF_evidence=NP_001068511.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 3%2C N-terminal (IPR001764),Glycoside hydrolase%2C family 3%2C C-terminal (IPR002772),Glycoside hydrolase%2C superfamily (IPR017853);TENOR=Os11t0696400-00;KEGG=Os11t0696400-00
Chr11	irgsp1_rep	five_prime_UTR	28483633	28483675	.	+	.	Parent=Os11t0696400-00
Chr11	irgsp1_rep	CDS	28483676	28484191	.	+	0	Parent=Os11t0696400-00
Chr11	irgsp1_rep	CDS	28484280	28485249	.	+	0	Parent=Os11t0696400-00
Chr11	irgsp1_rep	CDS	28485456	28485800	.	+	2	Parent=Os11t0696400-00
Chr11	irgsp1_rep	CDS	28485883	28486502	.	+	2	Parent=Os11t0696400-00
Chr11	irgsp1_rep	mRNA	28483678	28486409	.	-	.	ID=Os11t0696501-00;Name=Os11t0696501-00;Locus_id=Os11g0696501;Note=Hypothetical protein.;Transcript_evidence=tplb0030f15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os11t0696501-00
Chr11	irgsp1_rep	five_prime_UTR	28485880	28486409	.	-	.	Parent=Os11t0696501-00
Chr11	irgsp1_rep	five_prime_UTR	28485473	28485798	.	-	.	Parent=Os11t0696501-00
Chr11	irgsp1_rep	five_prime_UTR	28485210	28485340	.	-	.	Parent=Os11t0696501-00
Chr11	irgsp1_rep	CDS	28484291	28485209	.	-	0	Parent=Os11t0696501-00
Chr11	irgsp1_rep	CDS	28483748	28484172	.	-	2	Parent=Os11t0696501-00
Chr11	irgsp1_rep	three_prime_UTR	28483678	28483747	.	-	.	Parent=Os11t0696501-00
Chr11	irgsp1_rep	mRNA	28496703	28499952	.	+	.	ID=Os11t0696600-01;Name=Os11t0696600-01;Locus_id=Os11g0696600;Note=Heat shock protein Hsp70 domain containing protein.;Transcript_evidence=AK073119 (DDBJ%2C Best hit);ORF_evidence=Q2QZ82 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Heat shock protein Hsp70 (IPR001023);NIAS_FLcDNA=J033001C17;TENOR=Os11t0696600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	28496703	28497588	.	+	.	Parent=Os11t0696600-01
Chr11	irgsp1_rep	five_prime_UTR	28497684	28497731	.	+	.	Parent=Os11t0696600-01
Chr11	irgsp1_rep	five_prime_UTR	28497994	28498007	.	+	.	Parent=Os11t0696600-01
Chr11	irgsp1_rep	five_prime_UTR	28498098	28498161	.	+	.	Parent=Os11t0696600-01
Chr11	irgsp1_rep	CDS	28498162	28498192	.	+	0	Parent=Os11t0696600-01
Chr11	irgsp1_rep	CDS	28498280	28498365	.	+	2	Parent=Os11t0696600-01
Chr11	irgsp1_rep	CDS	28498848	28498976	.	+	0	Parent=Os11t0696600-01
Chr11	irgsp1_rep	CDS	28499366	28499497	.	+	0	Parent=Os11t0696600-01
Chr11	irgsp1_rep	CDS	28499606	28499614	.	+	0	Parent=Os11t0696600-01
Chr11	irgsp1_rep	three_prime_UTR	28499615	28499952	.	+	.	Parent=Os11t0696600-01
Chr11	irgsp1_rep	mRNA	28502696	28502811	.	-	.	ID=Os11t0696750-00;Name=Os11t0696750-00;Locus_id=Os11g0696750;Note=Non-protein coding transcript.;Transcript_evidence=EU947769 (DDBJ);ORF_evidence=NONE;TENOR=Os11t0696750-00
Chr11	irgsp1_rep	exon	28502696	28502811	.	-	.	Parent=Os11t0696750-00
Chr11	irgsp1_rep	mRNA	28508444	28511163	.	-	.	ID=Os11t0696900-01;Name=Os11t0696900-01;Locus_id=Os11g0696900;CGSNL Gene Symbol=LAC25;CGSNL Gene Name=LACCASE 25;Oryzabase Gene Symbol Synonym(s)=OsLAC25;Oryzabase Gene Name Synonym(s)=laccase 25;Note=Laccase (EC 1.10.3.2).;Transcript_evidence=AK241130 (DDBJ%2C Best hit);ORF_evidence=Q2QZ80 (UniProt);GO=Biological Process: lignin catabolic process (GO:0046274),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: apoplast (GO:0048046),Molecular Function: copper ion binding (GO:0005507),Molecular Function: laccase activity (GO:0008471),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Multicopper oxidase%2C type 1 (IPR001117),Multicopper oxidase%2C copper-binding site (IPR002355),Cupredoxin (IPR008972),Multicopper oxidase%2C type 2 (IPR011706),Multicopper oxidase%2C type 3 (IPR011707),Laccase (IPR017761);NIAS_FLcDNA=J065097H05;Oryzabase=18575;TENOR=Os11t0696900-01;KEGG=Os11t0696900-01 (EC:1.10.3.2)
Chr11	irgsp1_rep	five_prime_UTR	28511003	28511163	.	-	.	Parent=Os11t0696900-01
Chr11	irgsp1_rep	CDS	28510886	28511002	.	-	0	Parent=Os11t0696900-01
Chr11	irgsp1_rep	CDS	28510619	28510770	.	-	0	Parent=Os11t0696900-01
Chr11	irgsp1_rep	CDS	28510246	28510490	.	-	1	Parent=Os11t0696900-01
Chr11	irgsp1_rep	CDS	28509020	28510126	.	-	2	Parent=Os11t0696900-01
Chr11	irgsp1_rep	CDS	28508756	28508886	.	-	2	Parent=Os11t0696900-01
Chr11	irgsp1_rep	three_prime_UTR	28508444	28508755	.	-	.	Parent=Os11t0696900-01
Chr11	irgsp1_rep	mRNA	28509005	28514468	.	+	.	ID=Os11t0697001-01;Name=Os11t0697001-01;Locus_id=Os11g0697001;Note=Hypothetical gene.;Transcript_evidence=AK288861 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090077F02;TENOR=Os11t0697001-01;KEGG=Os11t0697001-01
Chr11	irgsp1_rep	five_prime_UTR	28509005	28509879	.	+	.	Parent=Os11t0697001-01
Chr11	irgsp1_rep	CDS	28509880	28510206	.	+	0	Parent=Os11t0697001-01
Chr11	irgsp1_rep	three_prime_UTR	28510207	28514468	.	+	.	Parent=Os11t0697001-01
Chr11	irgsp1_rep	mRNA	28516425	28520347	.	-	.	ID=Os11t0697100-01;Name=Os11t0697100-01;Locus_id=Os11g0697100;Note=Non-protein coding transcript.;Transcript_evidence=AK067885 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013123F22;TENOR=Os11t0697100-01
Chr11	irgsp1_rep	exon	28519006	28520347	.	-	.	Parent=Os11t0697100-01
Chr11	irgsp1_rep	exon	28518872	28518911	.	-	.	Parent=Os11t0697100-01
Chr11	irgsp1_rep	exon	28518601	28518691	.	-	.	Parent=Os11t0697100-01
Chr11	irgsp1_rep	exon	28516425	28517367	.	-	.	Parent=Os11t0697100-01
Chr11	irgsp1_rep	mRNA	28535546	28539827	.	-	.	ID=Os11t0697350-00;Name=Os11t0697350-00;Locus_id=Os11g0697350;Note=Conserved hypothetical protein.;Transcript_evidence=AK241561 (DDBJ%2C Secondary hit);ORF_evidence=NP_001176733.1 (RefSeq);TENOR=Os11t0697350-00
Chr11	irgsp1_rep	five_prime_UTR	28539685	28539827	.	-	.	Parent=Os11t0697350-00
Chr11	irgsp1_rep	CDS	28539325	28539684	.	-	0	Parent=Os11t0697350-00
Chr11	irgsp1_rep	three_prime_UTR	28539206	28539324	.	-	.	Parent=Os11t0697350-00
Chr11	irgsp1_rep	three_prime_UTR	28537343	28537399	.	-	.	Parent=Os11t0697350-00
Chr11	irgsp1_rep	three_prime_UTR	28535778	28535881	.	-	.	Parent=Os11t0697350-00
Chr11	irgsp1_rep	three_prime_UTR	28535546	28535755	.	-	.	Parent=Os11t0697350-00
Chr11	irgsp1_rep	mRNA	28560432	28561333	.	+	.	ID=Os11t0697600-00;Name=Os11t0697600-00;Locus_id=Os11g0697600;Note=Hypothetical gene.;Transcript_evidence=CT841618 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;TENOR=Os11t0697600-00;KEGG=Os11t0697600-00
Chr11	irgsp1_rep	five_prime_UTR	28560432	28560537	.	+	.	Parent=Os11t0697600-00
Chr11	irgsp1_rep	five_prime_UTR	28560624	28560875	.	+	.	Parent=Os11t0697600-00
Chr11	irgsp1_rep	CDS	28560876	28561124	.	+	0	Parent=Os11t0697600-00
Chr11	irgsp1_rep	three_prime_UTR	28561125	28561333	.	+	.	Parent=Os11t0697600-00
Chr11	irgsp1_rep	mRNA	28579789	28584012	.	-	.	ID=Os11t0698567-01;Name=Os11t0698567-01;Locus_id=Os11g0698567;Note=Conserved hypothetical protein.;Transcript_evidence=AK241561 (DDBJ%2C Best hit);ORF_evidence=NP_001176733.1 (RefSeq);NIAS_FLcDNA=J065178O09;TENOR=Os11t0698567-01
Chr11	irgsp1_rep	five_prime_UTR	28583870	28584012	.	-	.	Parent=Os11t0698567-01
Chr11	irgsp1_rep	CDS	28583510	28583869	.	-	0	Parent=Os11t0698567-01
Chr11	irgsp1_rep	three_prime_UTR	28583391	28583509	.	-	.	Parent=Os11t0698567-01
Chr11	irgsp1_rep	three_prime_UTR	28581530	28581586	.	-	.	Parent=Os11t0698567-01
Chr11	irgsp1_rep	three_prime_UTR	28579789	28580103	.	-	.	Parent=Os11t0698567-01
Chr11	irgsp1_rep	mRNA	28604659	28605559	.	+	.	ID=Os11t0699532-00;Name=Os11t0699532-00;Locus_id=Os11g0699532;Note=Hypothetical gene.;Transcript_evidence=CT841618 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os11t0699532-00;KEGG=Os11t0699532-00
Chr11	irgsp1_rep	five_prime_UTR	28604659	28604676	.	+	.	Parent=Os11t0699532-00
Chr11	irgsp1_rep	CDS	28604677	28604764	.	+	0	Parent=Os11t0699532-00
Chr11	irgsp1_rep	CDS	28604851	28604987	.	+	2	Parent=Os11t0699532-00
Chr11	irgsp1_rep	three_prime_UTR	28604988	28605559	.	+	.	Parent=Os11t0699532-00
Chr11	irgsp1_rep	mRNA	28653511	28655917	.	+	.	ID=Os11t0700100-01;Name=Os11t0700100-01;Locus_id=Os11g0700100;Note=Similar to LZ-NBS-LRR class RGA.;Transcript_evidence=AK108571 (DDBJ%2C Best hit);ORF_evidence=B8BIJ9 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);NIAS_FLcDNA=002-145-E08;TENOR=Os11t0700100-01;KEGG=Os11t0700100-01
Chr11	irgsp1_rep	five_prime_UTR	28653511	28653515	.	+	.	Parent=Os11t0700100-01
Chr11	irgsp1_rep	CDS	28653516	28653568	.	+	0	Parent=Os11t0700100-01
Chr11	irgsp1_rep	CDS	28653735	28654131	.	+	1	Parent=Os11t0700100-01
Chr11	irgsp1_rep	three_prime_UTR	28654132	28655624	.	+	.	Parent=Os11t0700100-01
Chr11	irgsp1_rep	three_prime_UTR	28655730	28655917	.	+	.	Parent=Os11t0700100-01
Chr11	irgsp1_rep	mRNA	28703901	28705306	.	-	.	ID=Os11t0700500-01;Name=Os11t0700500-01;Locus_id=Os11g0700500;Note=Similar to Snapdragon myb protein 305 homolog.;Transcript_evidence=AK111626 (DDBJ%2C Best hit);ORF_evidence=Q53NK6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J013113N19;Expression=AK111626;TENOR=Os11t0700500-01;KEGG=Os11t0700500-01
Chr11	irgsp1_rep	five_prime_UTR	28705125	28705306	.	-	.	Parent=Os11t0700500-01
Chr11	irgsp1_rep	CDS	28705004	28705124	.	-	0	Parent=Os11t0700500-01
Chr11	irgsp1_rep	CDS	28704749	28704878	.	-	2	Parent=Os11t0700500-01
Chr11	irgsp1_rep	CDS	28704204	28704666	.	-	1	Parent=Os11t0700500-01
Chr11	irgsp1_rep	three_prime_UTR	28703901	28704203	.	-	.	Parent=Os11t0700500-01
Chr11	irgsp1_rep	mRNA	28722579	28724062	.	-	.	ID=Os11t0700900-01;Name=Os11t0700900-01;Locus_id=Os11g0700900;Oryzabase Gene Symbol Synonym(s)=C10923;Note=Glycoside hydrolase%2C subgroup%2C catalytic core domain containing protein.;Transcript_evidence=AK067962 (DDBJ%2C Best hit);ORF_evidence=Q7GCM2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J013123G23;Oryzabase=13800;Expression=AK067962;TENOR=Os11t0700900-01;KEGG=Os11t0700900-01
Chr11	irgsp1_rep	five_prime_UTR	28724028	28724062	.	-	.	Parent=Os11t0700900-01
Chr11	irgsp1_rep	CDS	28723775	28724027	.	-	0	Parent=Os11t0700900-01
Chr11	irgsp1_rep	CDS	28723113	28723597	.	-	2	Parent=Os11t0700900-01
Chr11	irgsp1_rep	three_prime_UTR	28722579	28723112	.	-	.	Parent=Os11t0700900-01
Chr11	irgsp1_rep	mRNA	28722783	28724062	.	-	.	ID=Os11t0700900-02;Name=Os11t0700900-02;Locus_id=Os11g0700900;Oryzabase Gene Symbol Synonym(s)=C10923;Note=Class III chitinase homologue (OsChib3H-b).;Transcript_evidence=AK073757 (DDBJ%2C Best hit);ORF_evidence=Q7GCM2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 18%2C catalytic domain (IPR001223),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J033068O15;Oryzabase=13800;Expression=AK073757;TENOR=Os11t0700900-02;KEGG=Os11t0700900-02
Chr11	irgsp1_rep	five_prime_UTR	28724028	28724062	.	-	.	Parent=Os11t0700900-02
Chr11	irgsp1_rep	CDS	28723113	28724027	.	-	0	Parent=Os11t0700900-02
Chr11	irgsp1_rep	three_prime_UTR	28722783	28723112	.	-	.	Parent=Os11t0700900-02
Chr11	irgsp1_rep	mRNA	28727508	28728821	.	-	.	ID=Os11t0701000-01;Name=Os11t0701000-01;Locus_id=Os11g0701000;Note=Class III chitinase homologue (OsChib3H-c).;Transcript_evidence=AK103295 (DDBJ%2C Best hit);ORF_evidence=Q9SXY3 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 18%2C catalytic domain (IPR001223),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J033125A18;Expression=AK103295;TENOR=Os11t0701000-01;KEGG=Os11t0701000-01
Chr11	irgsp1_rep	five_prime_UTR	28728754	28728821	.	-	.	Parent=Os11t0701000-01
Chr11	irgsp1_rep	CDS	28727815	28728753	.	-	0	Parent=Os11t0701000-01
Chr11	irgsp1_rep	three_prime_UTR	28727508	28727814	.	-	.	Parent=Os11t0701000-01
Chr11	irgsp1_rep	mRNA	28730171	28731320	.	+	.	ID=Os11t0701100-01;Name=Os11t0701100-01;Locus_id=Os11g0701100;Oryzabase Gene Symbol Synonym(s)=riceXIP;Oryzabase Gene Name Synonym(s)=xylanase inhibitor protein;Note=Similar to Class III chitinase homologue (OsChib3H-h) (Fragment).;Transcript_evidence=AK064356 (DDBJ%2C Best hit);ORF_evidence=Q53NL5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 18%2C catalytic domain (IPR001223),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=002-108-B03;Oryzabase=11729;Expression=AK064356;TENOR=Os11t0701100-01;KEGG=Os11t0701100-01
Chr11	irgsp1_rep	five_prime_UTR	28730171	28730201	.	+	.	Parent=Os11t0701100-01
Chr11	irgsp1_rep	CDS	28730202	28731074	.	+	0	Parent=Os11t0701100-01
Chr11	irgsp1_rep	three_prime_UTR	28731075	28731320	.	+	.	Parent=Os11t0701100-01
Chr11	irgsp1_rep	mRNA	28730219	28731225	.	+	.	ID=Os11t0701100-02;Name=Os11t0701100-02;Locus_id=Os11g0701100;Oryzabase Gene Symbol Synonym(s)=riceXIP;Oryzabase Gene Name Synonym(s)=xylanase inhibitor protein;Note=Similar to Xylanase inhibitor protein 2.;Transcript_evidence=AK102731 (DDBJ%2C Best hit);ORF_evidence=Q53NL5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 18%2C catalytic domain (IPR001223),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J033105P15;Oryzabase=11729;Expression=AK102731;TENOR=Os11t0701100-02;KEGG=Os11t0701100-02
Chr11	irgsp1_rep	five_prime_UTR	28730219	28730219	.	+	.	Parent=Os11t0701100-02
Chr11	irgsp1_rep	CDS	28730220	28731074	.	+	0	Parent=Os11t0701100-02
Chr11	irgsp1_rep	three_prime_UTR	28731075	28731225	.	+	.	Parent=Os11t0701100-02
Chr11	irgsp1_rep	mRNA	28733145	28734249	.	+	.	ID=Os11t0701200-01;Name=Os11t0701200-01;Locus_id=Os11g0701200;Oryzabase Gene Symbol Synonym(s)=C00481;Note=Glycoside hydrolase%2C family 18 protein.;Transcript_evidence=AK073800 (DDBJ%2C Best hit);ORF_evidence=Q53NL5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 18%2C catalytic domain (IPR001223),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J033067D20;Oryzabase=13795;Expression=AK073800;TENOR=Os11t0701200-01;KEGG=Os11t0701200-01
Chr11	irgsp1_rep	five_prime_UTR	28733145	28733230	.	+	.	Parent=Os11t0701200-01
Chr11	irgsp1_rep	CDS	28733231	28734109	.	+	0	Parent=Os11t0701200-01
Chr11	irgsp1_rep	three_prime_UTR	28734110	28734249	.	+	.	Parent=Os11t0701200-01
Chr11	irgsp1_rep	mRNA	28735986	28737061	.	+	.	ID=Os11t0701400-01;Name=Os11t0701400-01;Locus_id=Os11g0701400;Oryzabase Gene Symbol Synonym(s)=C10150;Note=Chitinase (EC 3.2.1.14) III C10150-rice (EC 3.2.1.14).;Transcript_evidence=AK106319 (DDBJ%2C Best hit);ORF_evidence=Q53NL5 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 18%2C catalytic domain (IPR001223),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=002-101-E05;Oryzabase=13797;Expression=AK106319;TENOR=Os11t0701400-01;KEGG=Os11t0701400-01 (EC:3.2.1.14)
Chr11	irgsp1_rep	five_prime_UTR	28735986	28736064	.	+	.	Parent=Os11t0701400-01
Chr11	irgsp1_rep	CDS	28736065	28736934	.	+	0	Parent=Os11t0701400-01
Chr11	irgsp1_rep	three_prime_UTR	28736935	28737061	.	+	.	Parent=Os11t0701400-01
Chr11	irgsp1_rep	mRNA	28739616	28740634	.	+	.	ID=Os11t0701500-01;Name=Os11t0701500-01;Locus_id=Os11g0701500;Note=Similar to Class III chitinase homologue (OsChib3H-g) (Fragment).;Transcript_evidence=AK058882 (DDBJ%2C Best hit);ORF_evidence=Q53NM2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 18%2C catalytic domain (IPR001223),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-007-B10;Expression=AK058882;TENOR=Os11t0701500-01;KEGG=Os11t0701500-01
Chr11	irgsp1_rep	five_prime_UTR	28739616	28739654	.	+	.	Parent=Os11t0701500-01
Chr11	irgsp1_rep	CDS	28739655	28740509	.	+	0	Parent=Os11t0701500-01
Chr11	irgsp1_rep	three_prime_UTR	28740510	28740634	.	+	.	Parent=Os11t0701500-01
Chr11	irgsp1_rep	mRNA	28748102	28748484	.	+	.	ID=Os11t0701600-00;Name=Os11t0701600-00;Locus_id=Os11g0701600;Note=Glycoside hydrolase%2C family 18%2C catalytic domain domain containing protein.;Transcript_evidence=AB027426 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 18%2C catalytic domain (IPR001223),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);TENOR=Os11t0701600-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	28748102	28748484	.	+	0	Parent=Os11t0701600-00
Chr11	irgsp1_rep	mRNA	28749399	28750179	.	+	.	ID=Os11t0701700-01;Name=Os11t0701700-01;Locus_id=Os11g0701700;Note=Hypothetical gene.;Transcript_evidence=AK101544 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033048K18;Expression=AK101544;TENOR=Os11t0701700-01;KEGG=Os11t0701700-01
Chr11	irgsp1_rep	five_prime_UTR	28749399	28749400	.	+	.	Parent=Os11t0701700-01
Chr11	irgsp1_rep	CDS	28749401	28749685	.	+	0	Parent=Os11t0701700-01
Chr11	irgsp1_rep	three_prime_UTR	28749686	28750179	.	+	.	Parent=Os11t0701700-01
Chr11	irgsp1_rep	mRNA	28749433	28750242	.	+	.	ID=Os11t0701700-02;Name=Os11t0701700-02;Locus_id=Os11g0701700;Note=Hypothetical gene.;Transcript_evidence=AK120581 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013135O13;Expression=AK120581;TENOR=Os11t0701700-02;KEGG=Os11t0701700-02
Chr11	irgsp1_rep	five_prime_UTR	28749433	28749433	.	+	.	Parent=Os11t0701700-02
Chr11	irgsp1_rep	CDS	28749434	28749685	.	+	0	Parent=Os11t0701700-02
Chr11	irgsp1_rep	three_prime_UTR	28749686	28750242	.	+	.	Parent=Os11t0701700-02
Chr11	irgsp1_rep	mRNA	28753859	28755033	.	+	.	ID=Os11t0701800-01;Name=Os11t0701800-01;Locus_id=Os11g0701800;CGSNL Gene Symbol=RIXI;Oryzabase Gene Symbol Synonym(s)=C10701;Oryzabase Gene Name Synonym(s)=xylanase inhibitor protein%2C rice xylanase inhibitor;Note=Chitinase (EC 3.2.1.14) III C10701-rice (EC 3.2.1.14) (Class III chitinase homologue (OsChib3H-a)H-).;Transcript_evidence=AK102862 (DDBJ%2C Best hit),AK063939 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 18%2C catalytic domain (IPR001223),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J033111J19,001-123-E01;Oryzabase=11730;Expression=AK102862;TENOR=Os11t0701800-01;KEGG=Os11t0701800-01 (EC:3.2.1.14)
Chr11	irgsp1_rep	five_prime_UTR	28753859	28753963	.	+	.	Parent=Os11t0701800-01
Chr11	irgsp1_rep	CDS	28753964	28754878	.	+	0	Parent=Os11t0701800-01
Chr11	irgsp1_rep	three_prime_UTR	28754879	28755033	.	+	.	Parent=Os11t0701800-01
Chr11	irgsp1_rep	mRNA	28755994	28757153	.	-	.	ID=Os11t0701900-01;Name=Os11t0701900-01;Locus_id=Os11g0701900;Note=Glycoside hydrolase%2C family 18 protein.;Transcript_evidence=AK064281 (DDBJ%2C Best hit);ORF_evidence=Q7GCM7 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 18%2C catalytic domain (IPR001223),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=002-105-G04;Oryzabase=14257;Expression=AK064281;TENOR=Os11t0701900-01;KEGG=Os11t0701900-01
Chr11	irgsp1_rep	five_prime_UTR	28757077	28757153	.	-	.	Parent=Os11t0701900-01
Chr11	irgsp1_rep	CDS	28756174	28757076	.	-	0	Parent=Os11t0701900-01
Chr11	irgsp1_rep	three_prime_UTR	28755994	28756173	.	-	.	Parent=Os11t0701900-01
Chr11	irgsp1_rep	mRNA	28756219	28757156	.	+	.	ID=Os11t0702000-01;Name=Os11t0702000-01;Locus_id=Os11g0702000;Note=Hypothetical protein.;Transcript_evidence=AK106678 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-114-A12;TENOR=Os11t0702000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	28756219	28756662	.	+	.	Parent=Os11t0702000-01
Chr11	irgsp1_rep	CDS	28756663	28757037	.	+	0	Parent=Os11t0702000-01
Chr11	irgsp1_rep	three_prime_UTR	28757038	28757156	.	+	.	Parent=Os11t0702000-01
Chr11	irgsp1_rep	mRNA	28758837	28760003	.	-	.	ID=Os11t0702100-01;Name=Os11t0702100-01;Locus_id=Os11g0702100;Note=Similar to Class III chitinase homologue (OsChib3H-h) (Fragment).;Transcript_evidence=AK102505 (DDBJ%2C Best hit);ORF_evidence=B9G8V6 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 18%2C catalytic domain (IPR001223),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J033095E15;Oryzabase=14254;Expression=AK102505;TENOR=Os11t0702100-01;KEGG=Os11t0702100-01
Chr11	irgsp1_rep	five_prime_UTR	28759968	28760003	.	-	.	Parent=Os11t0702100-01
Chr11	irgsp1_rep	CDS	28759062	28759967	.	-	0	Parent=Os11t0702100-01
Chr11	irgsp1_rep	three_prime_UTR	28758837	28759061	.	-	.	Parent=Os11t0702100-01
Chr11	irgsp1_rep	mRNA	28760411	28761600	.	-	.	ID=Os11t0702200-01;Name=Os11t0702200-01;Locus_id=Os11g0702200;Note=Glycoside hydrolase%2C family 18 protein.;Transcript_evidence=AK101155 (DDBJ%2C Best hit),AK073595 (DDBJ%2C Best hit),AK102649 (DDBJ%2C Best hit);ORF_evidence=Q7GCM7 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 18%2C catalytic domain (IPR001223),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J033027E14,J033048M21,J033101A20;Oryzabase=14255;Expression=AK101155;TENOR=Os11t0702200-01;KEGG=Os11t0702200-01
Chr11	irgsp1_rep	five_prime_UTR	28761543	28761600	.	-	.	Parent=Os11t0702200-01
Chr11	irgsp1_rep	CDS	28760634	28761542	.	-	0	Parent=Os11t0702200-01
Chr11	irgsp1_rep	three_prime_UTR	28760411	28760633	.	-	.	Parent=Os11t0702200-01
Chr11	irgsp1_rep	mRNA	28762441	28763225	.	+	.	ID=Os11t0702250-01;Name=Os11t0702250-01;Locus_id=Os11g0702250;Note=Non-protein coding transcript.;Transcript_evidence=AK243307 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J100055D19;TENOR=Os11t0702250-01
Chr11	irgsp1_rep	exon	28762441	28763225	.	+	.	Parent=Os11t0702250-01
Chr11	irgsp1_rep	mRNA	28762628	28763119	.	-	.	ID=Os11t0702300-00;Name=Os11t0702300-00;Locus_id=Os11g0702300;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001176736.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);TENOR=Os11t0702300-00;KEGG=Os11t0702300-00
Chr11	irgsp1_rep	CDS	28762628	28763119	.	-	0	Parent=Os11t0702300-00
Chr11	irgsp1_rep	mRNA	28766270	28766937	.	-	.	ID=Os11t0702400-01;Name=Os11t0702400-01;Locus_id=Os11g0702400;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK062491 (DDBJ%2C Best hit),AK105226 (DDBJ%2C Best hit);ORF_evidence=Q7X9N7 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=001-103-H07,001-111-B01;Expression=AK062491;TENOR=Os11t0702400-01;KEGG=Os11t0702400-01
Chr11	irgsp1_rep	five_prime_UTR	28766836	28766937	.	-	.	Parent=Os11t0702400-01
Chr11	irgsp1_rep	CDS	28766323	28766835	.	-	0	Parent=Os11t0702400-01
Chr11	irgsp1_rep	three_prime_UTR	28766270	28766322	.	-	.	Parent=Os11t0702400-01
Chr11	irgsp1_rep	mRNA	28770418	28771740	.	-	.	ID=Os11t0702501-00;Name=Os11t0702501-00;Locus_id=Os11g0702501;Note=Hypothetical conserved gene.;Transcript_evidence=AK100220 (DDBJ%2C Secondary hit);ORF_evidence=Q6YVF6 (UniProt);Expression=AK100220;TENOR=Os11t0702501-00;KEGG=Os11t0702501-00
Chr11	irgsp1_rep	five_prime_UTR	28771488	28771740	.	-	.	Parent=Os11t0702501-00
Chr11	irgsp1_rep	CDS	28771224	28771487	.	-	0	Parent=Os11t0702501-00
Chr11	irgsp1_rep	CDS	28770843	28771217	.	-	0	Parent=Os11t0702501-00
Chr11	irgsp1_rep	three_prime_UTR	28770418	28770842	.	-	.	Parent=Os11t0702501-00
Chr11	irgsp1_rep	mRNA	28770668	28771997	.	+	.	ID=Os11t0702600-00;Name=Os11t0702600-00;Locus_id=Os11g0702600;Note=Hypothetical conserved gene.;Transcript_evidence=AK068568 (DDBJ%2C Secondary hit);ORF_evidence=Q53NM7 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: polynucleotide adenylyltransferase activity (GO:0004652);InterPro=Poly(A) polymerase%2C central domain (IPR007012);Expression=AK068568;TENOR=Os11t0702600-00;KEGG=Os11t0702600-00
Chr11	irgsp1_rep	five_prime_UTR	28770668	28770759	.	+	.	Parent=Os11t0702600-00
Chr11	irgsp1_rep	CDS	28770760	28771217	.	+	0	Parent=Os11t0702600-00
Chr11	irgsp1_rep	CDS	28771224	28771797	.	+	1	Parent=Os11t0702600-00
Chr11	irgsp1_rep	three_prime_UTR	28771798	28771997	.	+	.	Parent=Os11t0702600-00
Chr11	irgsp1_rep	mRNA	28774435	28777987	.	+	.	ID=Os11t0702700-01;Name=Os11t0702700-01;Locus_id=Os11g0702700;Note=Homeodomain-like containing protein.;Transcript_evidence=AK064388 (DDBJ%2C Best hit);ORF_evidence=A2Q269 (UniProt);GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Putative harbinger transposase-derived nuclease (IPR006912);NIAS_FLcDNA=002-108-F06;Expression=AK064388;TENOR=Os11t0702700-01;KEGG=Os11t0702700-01
Chr11	irgsp1_rep	five_prime_UTR	28774435	28774818	.	+	.	Parent=Os11t0702700-01
Chr11	irgsp1_rep	CDS	28774819	28774960	.	+	0	Parent=Os11t0702700-01
Chr11	irgsp1_rep	CDS	28776603	28777636	.	+	2	Parent=Os11t0702700-01
Chr11	irgsp1_rep	three_prime_UTR	28777637	28777987	.	+	.	Parent=Os11t0702700-01
Chr11	irgsp1_rep	mRNA	28774464	28777972	.	+	.	ID=Os11t0702700-02;Name=Os11t0702700-02;Locus_id=Os11g0702700;Note=Homeodomain-like containing protein.;Transcript_evidence=AK099346 (DDBJ%2C Best hit);ORF_evidence=A2Q269 (UniProt);GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Putative harbinger transposase-derived nuclease (IPR006912);NIAS_FLcDNA=J033025L03;Expression=AK099346;TENOR=Os11t0702700-02;KEGG=Os11t0702700-02
Chr11	irgsp1_rep	five_prime_UTR	28774464	28774818	.	+	.	Parent=Os11t0702700-02
Chr11	irgsp1_rep	CDS	28774819	28774960	.	+	0	Parent=Os11t0702700-02
Chr11	irgsp1_rep	CDS	28776603	28777636	.	+	2	Parent=Os11t0702700-02
Chr11	irgsp1_rep	three_prime_UTR	28777637	28777972	.	+	.	Parent=Os11t0702700-02
Chr11	irgsp1_rep	mRNA	28781160	28782126	.	-	.	ID=Os11t0702900-01;Name=Os11t0702900-01;Locus_id=Os11g0702900;Note=Hypothetical protein.;Transcript_evidence=AK109008 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-153-H07;Expression=AK109008;TENOR=Os11t0702900-01;KEGG=Os11t0702900-01
Chr11	irgsp1_rep	five_prime_UTR	28781992	28782126	.	-	.	Parent=Os11t0702900-01
Chr11	irgsp1_rep	CDS	28781314	28781991	.	-	0	Parent=Os11t0702900-01
Chr11	irgsp1_rep	three_prime_UTR	28781160	28781313	.	-	.	Parent=Os11t0702900-01
Chr11	irgsp1_rep	mRNA	28781311	28782194	.	+	.	ID=Os11t0703000-01;Name=Os11t0703000-01;Locus_id=Os11g0703000;Oryzabase Gene Name Synonym(s)=Osmotin protein homologue;Note=Thaumatin%2C pathogenesis-related family protein.;Transcript_evidence=AK108011 (DDBJ%2C Best hit);ORF_evidence=Q53NM3 (UniProt);InterPro=Thaumatin%2C pathogenesis-related (IPR001938);NIAS_FLcDNA=002-135-H05;Oryzabase=14097;Expression=AK108011;TENOR=Os11t0703000-01;KEGG=Os11t0703000-01
Chr11	irgsp1_rep	five_prime_UTR	28781311	28781343	.	+	.	Parent=Os11t0703000-01
Chr11	irgsp1_rep	CDS	28781344	28781982	.	+	0	Parent=Os11t0703000-01
Chr11	irgsp1_rep	three_prime_UTR	28781983	28782194	.	+	.	Parent=Os11t0703000-01
Chr11	irgsp1_rep	mRNA	28783185	28783983	.	+	.	ID=Os11t0703100-01;Name=Os11t0703100-01;Locus_id=Os11g0703100;Note=Thaumatin%2C pathogenesis-related family protein.;Transcript_evidence=AK243460 (DDBJ%2C Best hit);ORF_evidence=Q53NM3 (UniProt);InterPro=Thaumatin%2C pathogenesis-related (IPR001938);NIAS_FLcDNA=J100071A15;TENOR=Os11t0703100-01;KEGG=Os11t0703100-01
Chr11	irgsp1_rep	five_prime_UTR	28783185	28783203	.	+	.	Parent=Os11t0703100-01
Chr11	irgsp1_rep	CDS	28783204	28783824	.	+	0	Parent=Os11t0703100-01
Chr11	irgsp1_rep	three_prime_UTR	28783825	28783983	.	+	.	Parent=Os11t0703100-01
Chr11	irgsp1_rep	mRNA	28786112	28788237	.	-	.	ID=Os11t0703400-01;Name=Os11t0703400-01;Locus_id=Os11g0703400;Oryzabase Gene Symbol Synonym(s)=BIP109;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 109%2C BRI1-interacting protein 109%2C brassinosteroid receptor kinase-interacting protein 109;Note=Similar to BRI1-KD interacting protein 109.;Transcript_evidence=AK073930 (DDBJ%2C Best hit);ORF_evidence=Q762A5 (UniProt);GO=Biological Process: protein transport (GO:0015031);InterPro=Snf7 (IPR005024);NIAS_FLcDNA=J033072F23;Oryzabase=13695;TENOR=Os11t0703400-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	28788049	28788237	.	-	.	Parent=Os11t0703400-01
Chr11	irgsp1_rep	CDS	28788012	28788048	.	-	0	Parent=Os11t0703400-01
Chr11	irgsp1_rep	CDS	28787670	28787800	.	-	2	Parent=Os11t0703400-01
Chr11	irgsp1_rep	CDS	28786965	28787069	.	-	0	Parent=Os11t0703400-01
Chr11	irgsp1_rep	CDS	28786529	28786789	.	-	0	Parent=Os11t0703400-01
Chr11	irgsp1_rep	CDS	28786263	28786403	.	-	0	Parent=Os11t0703400-01
Chr11	irgsp1_rep	three_prime_UTR	28786112	28786262	.	-	.	Parent=Os11t0703400-01
Chr11	irgsp1_rep	mRNA	28786133	28788214	.	-	.	ID=Os11t0703400-02;Name=Os11t0703400-02;Locus_id=Os11g0703400;Oryzabase Gene Symbol Synonym(s)=BIP109;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 109%2C BRI1-interacting protein 109%2C brassinosteroid receptor kinase-interacting protein 109;Note=Similar to BRI1-KD interacting protein 109.;Transcript_evidence=AK061167 (DDBJ%2C Best hit);ORF_evidence=Q762A5 (UniProt);GO=Biological Process: protein transport (GO:0015031);InterPro=Snf7 (IPR005024);NIAS_FLcDNA=006-209-A10;Oryzabase=13695;TENOR=Os11t0703400-02
Chr11	irgsp1_rep	five_prime_UTR	28788049	28788214	.	-	.	Parent=Os11t0703400-02
Chr11	irgsp1_rep	CDS	28788012	28788048	.	-	0	Parent=Os11t0703400-02
Chr11	irgsp1_rep	CDS	28787670	28787800	.	-	2	Parent=Os11t0703400-02
Chr11	irgsp1_rep	CDS	28786965	28787069	.	-	0	Parent=Os11t0703400-02
Chr11	irgsp1_rep	CDS	28786529	28786789	.	-	0	Parent=Os11t0703400-02
Chr11	irgsp1_rep	CDS	28786263	28786403	.	-	0	Parent=Os11t0703400-02
Chr11	irgsp1_rep	three_prime_UTR	28786133	28786262	.	-	.	Parent=Os11t0703400-02
Chr11	irgsp1_rep	mRNA	28790162	28791737	.	+	.	ID=Os11t0703500-01;Name=Os11t0703500-01;Locus_id=Os11g0703500;Note=Conserved hypothetical protein.;Transcript_evidence=AK062888 (DDBJ%2C Best hit);ORF_evidence=B8BIK9 (UniProt);NIAS_FLcDNA=001-108-D12;Expression=AK062888;TENOR=Os11t0703500-01;KEGG=Os11t0703500-01
Chr11	irgsp1_rep	five_prime_UTR	28790162	28790220	.	+	.	Parent=Os11t0703500-01
Chr11	irgsp1_rep	CDS	28790221	28790274	.	+	0	Parent=Os11t0703500-01
Chr11	irgsp1_rep	CDS	28790989	28791115	.	+	0	Parent=Os11t0703500-01
Chr11	irgsp1_rep	CDS	28791187	28791245	.	+	2	Parent=Os11t0703500-01
Chr11	irgsp1_rep	three_prime_UTR	28791246	28791369	.	+	.	Parent=Os11t0703500-01
Chr11	irgsp1_rep	three_prime_UTR	28791476	28791737	.	+	.	Parent=Os11t0703500-01
Chr11	irgsp1_rep	mRNA	28793142	28794679	.	+	.	ID=Os11t0703600-01;Name=Os11t0703600-01;Locus_id=Os11g0703600;Note=Conserved hypothetical protein.;Transcript_evidence=AK060355 (DDBJ%2C Best hit);ORF_evidence=B8BIK8 (UniProt);NIAS_FLcDNA=001-008-G09;Expression=AK060355;TENOR=Os11t0703600-01;KEGG=Os11t0703600-01
Chr11	irgsp1_rep	five_prime_UTR	28793142	28793323	.	+	.	Parent=Os11t0703600-01
Chr11	irgsp1_rep	five_prime_UTR	28793442	28793718	.	+	.	Parent=Os11t0703600-01
Chr11	irgsp1_rep	CDS	28793719	28794462	.	+	0	Parent=Os11t0703600-01
Chr11	irgsp1_rep	three_prime_UTR	28794463	28794679	.	+	.	Parent=Os11t0703600-01
Chr11	irgsp1_rep	mRNA	28793188	28794834	.	+	.	ID=Os11t0703600-02;Name=Os11t0703600-02;Locus_id=Os11g0703600;Note=Conserved hypothetical protein.;Transcript_evidence=AK060197 (DDBJ%2C Best hit);ORF_evidence=B8BIK8 (UniProt);NIAS_FLcDNA=001-001-F05;Expression=AK060197;TENOR=Os11t0703600-02;KEGG=Os11t0703600-02
Chr11	irgsp1_rep	five_prime_UTR	28793188	28793718	.	+	.	Parent=Os11t0703600-02
Chr11	irgsp1_rep	CDS	28793719	28794462	.	+	0	Parent=Os11t0703600-02
Chr11	irgsp1_rep	three_prime_UTR	28794463	28794834	.	+	.	Parent=Os11t0703600-02
Chr11	irgsp1_rep	mRNA	28793239	28794678	.	+	.	ID=Os11t0703600-03;Name=Os11t0703600-03;Locus_id=Os11g0703600;Note=Hypothetical conserved gene.;Transcript_evidence=AK073953 (DDBJ%2C Best hit);ORF_evidence=B8BIK8 (UniProt);NIAS_FLcDNA=J033076G17;Expression=AK073953;TENOR=Os11t0703600-03;KEGG=Os11t0703600-03
Chr11	irgsp1_rep	five_prime_UTR	28793239	28793722	.	+	.	Parent=Os11t0703600-03
Chr11	irgsp1_rep	CDS	28793791	28794462	.	+	0	Parent=Os11t0703600-03
Chr11	irgsp1_rep	three_prime_UTR	28794463	28794678	.	+	.	Parent=Os11t0703600-03
Chr11	irgsp1_rep	mRNA	28804256	28808548	.	+	.	ID=Os11t0703900-01;Name=Os11t0703900-01;Locus_id=Os11g0703900;Oryzabase Gene Symbol Synonym(s)=HSP70%2C hsp70%2C OsHSP70%2C OsMed37_8%2C Med37_8;Oryzabase Gene Name Synonym(s)=heat shock protein 70%2C heat-shock protein 70%2C HEAT SHOCK PROTEIN 70KD%2C heat-shock protein cognate 70%2C Mediator 37_8;Note=Heat shock protein 70.;Transcript_evidence=AK065431 (DDBJ%2C Best hit),AK119255 (DDBJ%2C Best hit);ORF_evidence=Q40693 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Heat shock protein Hsp70 (IPR001023),Heat shock protein 70 (IPR013126),Heat shock protein 70%2C conserved site (IPR018181);NIAS_FLcDNA=J013021C17,001-123-H02;Oryzabase=15713;TENOR=Os11t0703900-01
Chr11	irgsp1_rep	five_prime_UTR	28804256	28804326	.	+	.	Parent=Os11t0703900-01
Chr11	irgsp1_rep	CDS	28804327	28804540	.	+	0	Parent=Os11t0703900-01
Chr11	irgsp1_rep	CDS	28806455	28808190	.	+	2	Parent=Os11t0703900-01
Chr11	irgsp1_rep	three_prime_UTR	28808191	28808548	.	+	.	Parent=Os11t0703900-01
Chr11	irgsp1_rep	mRNA	28807877	28808405	.	+	.	ID=Os11t0703900-02;Name=Os11t0703900-02;Locus_id=Os11g0703900;Oryzabase Gene Symbol Synonym(s)=HSP70%2C hsp70%2C OsHSP70%2C OsMed37_8%2C Med37_8;Oryzabase Gene Name Synonym(s)=heat shock protein 70%2C heat-shock protein 70%2C HEAT SHOCK PROTEIN 70KD%2C heat-shock protein cognate 70%2C Mediator 37_8;Note=Similar to Heat shock protein 70.;Transcript_evidence=AK119710 (DDBJ%2C Best hit);ORF_evidence=Q40693 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Heat shock protein Hsp70 (IPR001023),Heat shock protein 70 (IPR013126);NIAS_FLcDNA=002-157-E11;Oryzabase=15713;Expression=AK119710;TENOR=Os11t0703900-02;KEGG=Os11t0703900-02
Chr11	irgsp1_rep	five_prime_UTR	28807877	28807878	.	+	.	Parent=Os11t0703900-02
Chr11	irgsp1_rep	CDS	28807879	28808190	.	+	0	Parent=Os11t0703900-02
Chr11	irgsp1_rep	three_prime_UTR	28808191	28808405	.	+	.	Parent=Os11t0703900-02
Chr11	irgsp1_rep	mRNA	28809410	28811547	.	+	.	ID=Os11t0704000-00;Name=Os11t0704000-00;Locus_id=Os11g0704000;Note=SelT/selW/selH selenoprotein family protein.;Transcript_evidence=CT835631 (DDBJ%2C Best hit);ORF_evidence=B6TCP6 (UniProt);TENOR=Os11t0704000-00;KEGG=Os11t0704000-00
Chr11	irgsp1_rep	five_prime_UTR	28809410	28809468	.	+	.	Parent=Os11t0704000-00
Chr11	irgsp1_rep	CDS	28809469	28809725	.	+	0	Parent=Os11t0704000-00
Chr11	irgsp1_rep	CDS	28810619	28810715	.	+	1	Parent=Os11t0704000-00
Chr11	irgsp1_rep	CDS	28810835	28810894	.	+	0	Parent=Os11t0704000-00
Chr11	irgsp1_rep	CDS	28811186	28811266	.	+	0	Parent=Os11t0704000-00
Chr11	irgsp1_rep	three_prime_UTR	28811267	28811547	.	+	.	Parent=Os11t0704000-00
Chr11	irgsp1_rep	mRNA	28812033	28815723	.	-	.	ID=Os11t0704100-00;Name=Os11t0704100-00;Locus_id=Os11g0704100;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=AK335771 (DDBJ);ORF_evidence=Q53NN7 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182),Leucine-rich repeat%2C typical subtype (IPR003591);Oryzabase=20244;TENOR=Os11t0704100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	28814668	28815723	.	-	0	Parent=Os11t0704100-00
Chr11	irgsp1_rep	CDS	28812033	28814384	.	-	0	Parent=Os11t0704100-00
Chr11	irgsp1_rep	mRNA	28820765	28824042	.	+	.	ID=Os11t0704300-01;Name=Os11t0704300-01;Locus_id=Os11g0704300;CGSNL Gene Symbol=OBGM;CGSNL Gene Name=OBG PROTEIN M;Oryzabase Gene Symbol Synonym(s)=OsObgM%2C ObgM;Oryzabase Gene Name Synonym(s)=Spo0B-associated GTP-binding protein M%2C Obg protein M;Note=GTP1/OBG subdomain containing protein.;Transcript_evidence=AK101431 (DDBJ%2C Best hit);ORF_evidence=A2ZH19 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=GTP-binding domain%2C HSR1-related (IPR002917),GTP1/OBG (IPR006073),GTP1/OBG subdomain (IPR006169),GTP-binding protein Obg/CgtA (IPR014100);NIAS_FLcDNA=J033038K20;Oryzabase=22163;Expression=AK101431;TENOR=Os11t0704300-01;KEGG=Os11t0704300-01
Chr11	irgsp1_rep	five_prime_UTR	28820765	28820869	.	+	.	Parent=Os11t0704300-01
Chr11	irgsp1_rep	CDS	28820870	28820995	.	+	0	Parent=Os11t0704300-01
Chr11	irgsp1_rep	CDS	28821533	28821641	.	+	0	Parent=Os11t0704300-01
Chr11	irgsp1_rep	CDS	28821964	28822046	.	+	2	Parent=Os11t0704300-01
Chr11	irgsp1_rep	CDS	28822588	28822650	.	+	0	Parent=Os11t0704300-01
Chr11	irgsp1_rep	CDS	28822746	28823951	.	+	0	Parent=Os11t0704300-01
Chr11	irgsp1_rep	three_prime_UTR	28823952	28824042	.	+	.	Parent=Os11t0704300-01
Chr11	irgsp1_rep	mRNA	28820814	28824145	.	+	.	ID=Os11t0704300-02;Name=Os11t0704300-02;Locus_id=Os11g0704300;CGSNL Gene Symbol=OBGM;CGSNL Gene Name=OBG PROTEIN M;Oryzabase Gene Symbol Synonym(s)=OsObgM%2C ObgM;Oryzabase Gene Name Synonym(s)=Spo0B-associated GTP-binding protein M%2C Obg protein M;Note=GTP1/OBG subdomain containing protein.;Transcript_evidence=AK105431 (DDBJ%2C Best hit);ORF_evidence=A2ZH19 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=GTP-binding domain%2C HSR1-related (IPR002917),GTP1/OBG (IPR006073),GTP1/OBG subdomain (IPR006169),GTP-binding protein Obg/CgtA (IPR014100);NIAS_FLcDNA=001-124-F02;Oryzabase=22163;Expression=AK105431;TENOR=Os11t0704300-02;KEGG=Os11t0704300-02
Chr11	irgsp1_rep	five_prime_UTR	28820814	28820869	.	+	.	Parent=Os11t0704300-02
Chr11	irgsp1_rep	CDS	28820870	28820995	.	+	0	Parent=Os11t0704300-02
Chr11	irgsp1_rep	CDS	28821533	28821641	.	+	0	Parent=Os11t0704300-02
Chr11	irgsp1_rep	CDS	28821964	28822046	.	+	2	Parent=Os11t0704300-02
Chr11	irgsp1_rep	CDS	28822588	28822650	.	+	0	Parent=Os11t0704300-02
Chr11	irgsp1_rep	CDS	28822746	28823951	.	+	0	Parent=Os11t0704300-02
Chr11	irgsp1_rep	three_prime_UTR	28823952	28824145	.	+	.	Parent=Os11t0704300-02
Chr11	irgsp1_rep	mRNA	28827746	28828439	.	+	.	ID=Os11t0704500-01;Name=Os11t0704500-01;Locus_id=Os11g0704500;CGSNL Gene Symbol=MTI1A;CGSNL Gene Name=METALLOTHIONEIN I-1A;Oryzabase Gene Symbol Synonym(s)=MT1a%2C OsMT1a%2C OsMT1e%2C OsMT-I-1a%2C OsMT1e-P%2C MTa%2C rgMT%2C OsMT-1%2C rgMT-1;Oryzabase Gene Name Synonym(s)=Metallothionein 1e%2C type 1 metallothionein e%2C rice genomic metallothionein-like gene%2C metallothionein-like gene-1%2C rice genomic metallothionein-like gene-1%2C Metallothionein-like protein 1;Note=Metallothionein-like protein type 1.;Transcript_evidence=AK119726 (DDBJ%2C Best hit),AK062653 (DDBJ%2C Best hit),AK120630 (DDBJ%2C Best hit);ORF_evidence=B2ZSV7 (UniProt);GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Metallothionein%2C family 15%2C plant (IPR000347);NIAS_FLcDNA=002-157-H05,001-105-E09,J013153E02;Oryzabase=11117;TENOR=Os11t0704500-01
Chr11	irgsp1_rep	five_prime_UTR	28827746	28827833	.	+	.	Parent=Os11t0704500-01
Chr11	irgsp1_rep	CDS	28827834	28827886	.	+	0	Parent=Os11t0704500-01
Chr11	irgsp1_rep	CDS	28828028	28828199	.	+	1	Parent=Os11t0704500-01
Chr11	irgsp1_rep	three_prime_UTR	28828200	28828439	.	+	.	Parent=Os11t0704500-01
Chr11	irgsp1_rep	mRNA	28827956	28828266	.	-	.	ID=Os11t0704525-00;Name=Os11t0704525-00;Locus_id=Os11g0704525;Note=Conserved hypothetical protein.;Transcript_evidence=EF558903 (DDBJ);ORF_evidence=C4J3L9 (UniProt);TENOR=Os11t0704525-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	28828196	28828266	.	-	.	Parent=Os11t0704525-00
Chr11	irgsp1_rep	CDS	28827956	28828195	.	-	0	Parent=Os11t0704525-00
Chr11	irgsp1_rep	mRNA	28828627	28835655	.	+	.	ID=Os11t0704550-01;Name=Os11t0704550-01;Locus_id=Os11g0704550;Note=Conserved hypothetical protein.;Transcript_evidence=AK243169 (DDBJ%2C Best hit);ORF_evidence=NP_001176737.1 (RefSeq);NIAS_FLcDNA=J100035H13;TENOR=Os11t0704550-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	28828627	28829034	.	+	.	Parent=Os11t0704550-01
Chr11	irgsp1_rep	five_prime_UTR	28829450	28829577	.	+	.	Parent=Os11t0704550-01
Chr11	irgsp1_rep	five_prime_UTR	28830230	28830308	.	+	.	Parent=Os11t0704550-01
Chr11	irgsp1_rep	five_prime_UTR	28831706	28831761	.	+	.	Parent=Os11t0704550-01
Chr11	irgsp1_rep	CDS	28831762	28831797	.	+	0	Parent=Os11t0704550-01
Chr11	irgsp1_rep	CDS	28832692	28832757	.	+	0	Parent=Os11t0704550-01
Chr11	irgsp1_rep	three_prime_UTR	28832758	28832970	.	+	.	Parent=Os11t0704550-01
Chr11	irgsp1_rep	three_prime_UTR	28833081	28833155	.	+	.	Parent=Os11t0704550-01
Chr11	irgsp1_rep	three_prime_UTR	28833628	28833726	.	+	.	Parent=Os11t0704550-01
Chr11	irgsp1_rep	three_prime_UTR	28833824	28833927	.	+	.	Parent=Os11t0704550-01
Chr11	irgsp1_rep	three_prime_UTR	28835374	28835655	.	+	.	Parent=Os11t0704550-01
Chr11	irgsp1_rep	mRNA	28838890	28842804	.	-	.	ID=Os11t0704600-01;Name=Os11t0704600-01;Locus_id=Os11g0704600;Oryzabase Gene Name Synonym(s)=Similar to Beta-glucanase precursor;Note=Similar to Beta-1%2C3 glucanase precursor (EC 3.2.1.39).;Transcript_evidence=AK102883 (DDBJ%2C Best hit);ORF_evidence=Q53NP0 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J033112J01;Oryzabase=23377;Expression=AK102883;TENOR=Os11t0704600-01;KEGG=Os11t0704600-01 (EC:3.2.1.39)
Chr11	irgsp1_rep	five_prime_UTR	28842657	28842804	.	-	.	Parent=Os11t0704600-01
Chr11	irgsp1_rep	CDS	28841571	28842656	.	-	0	Parent=Os11t0704600-01
Chr11	irgsp1_rep	CDS	28839388	28839691	.	-	0	Parent=Os11t0704600-01
Chr11	irgsp1_rep	CDS	28839198	28839226	.	-	2	Parent=Os11t0704600-01
Chr11	irgsp1_rep	three_prime_UTR	28838890	28839197	.	-	.	Parent=Os11t0704600-01
Chr11	irgsp1_rep	mRNA	28838945	28842688	.	-	.	ID=Os11t0704600-02;Name=Os11t0704600-02;Locus_id=Os11g0704600;Oryzabase Gene Name Synonym(s)=Similar to Beta-glucanase precursor;Note=Similar to Beta-1%2C3 glucanase precursor (EC 3.2.1.39).;Transcript_evidence=AK059271 (DDBJ%2C Best hit);ORF_evidence=Q53NP0 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-025-B11;Oryzabase=23377;Expression=AK059271;TENOR=Os11t0704600-02;KEGG=Os11t0704600-02 (EC:3.2.1.39)
Chr11	irgsp1_rep	five_prime_UTR	28842657	28842688	.	-	.	Parent=Os11t0704600-02
Chr11	irgsp1_rep	CDS	28841571	28842656	.	-	0	Parent=Os11t0704600-02
Chr11	irgsp1_rep	CDS	28839388	28839691	.	-	0	Parent=Os11t0704600-02
Chr11	irgsp1_rep	CDS	28839198	28839226	.	-	2	Parent=Os11t0704600-02
Chr11	irgsp1_rep	three_prime_UTR	28838945	28839197	.	-	.	Parent=Os11t0704600-02
Chr11	irgsp1_rep	mRNA	28838859	28842681	.	-	.	ID=Os11t0704600-03;Name=Os11t0704600-03;Locus_id=Os11g0704600;Oryzabase Gene Name Synonym(s)=Similar to Beta-glucanase precursor;Note=Glycoside hydrolase%2C family 17 protein.;Transcript_evidence=AK100931 (DDBJ%2C Best hit);ORF_evidence=Q53NP0 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 17 (IPR000490),X8 (IPR012946),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J023135K21;Oryzabase=23377;Expression=AK100931;TENOR=Os11t0704600-03;KEGG=Os11t0704600-03
Chr11	irgsp1_rep	five_prime_UTR	28842657	28842681	.	-	.	Parent=Os11t0704600-03
Chr11	irgsp1_rep	CDS	28842021	28842656	.	-	0	Parent=Os11t0704600-03
Chr11	irgsp1_rep	CDS	28841571	28841897	.	-	0	Parent=Os11t0704600-03
Chr11	irgsp1_rep	CDS	28839388	28839691	.	-	0	Parent=Os11t0704600-03
Chr11	irgsp1_rep	CDS	28839198	28839226	.	-	2	Parent=Os11t0704600-03
Chr11	irgsp1_rep	three_prime_UTR	28838859	28839197	.	-	.	Parent=Os11t0704600-03
Chr11	irgsp1_rep	mRNA	28846127	28852901	.	-	.	ID=Os11t0704700-01;Name=Os11t0704700-01;Locus_id=Os11g0704700;CGSNL Gene Symbol=SCL57;CGSNL Gene Name=SC35-LIKE PROTEIN 57;Oryzabase Gene Symbol Synonym(s)=Os-SCL57%2C OsSCL57;Oryzabase Gene Name Synonym(s)=SC35-like protein 57%2C SCL subfamily protein 57;Note=RNA recognition motif domain domain containing protein.;Transcript_evidence=AK102518 (DDBJ%2C Best hit);ORF_evidence=B9G8W4 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J033095N01;Oryzabase=22745;TENOR=Os11t0704700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	28852830	28852901	.	-	.	Parent=Os11t0704700-01
Chr11	irgsp1_rep	CDS	28852816	28852829	.	-	0	Parent=Os11t0704700-01
Chr11	irgsp1_rep	CDS	28852468	28852620	.	-	1	Parent=Os11t0704700-01
Chr11	irgsp1_rep	CDS	28852315	28852392	.	-	1	Parent=Os11t0704700-01
Chr11	irgsp1_rep	CDS	28851277	28851441	.	-	1	Parent=Os11t0704700-01
Chr11	irgsp1_rep	CDS	28850943	28851080	.	-	1	Parent=Os11t0704700-01
Chr11	irgsp1_rep	CDS	28849717	28849784	.	-	1	Parent=Os11t0704700-01
Chr11	irgsp1_rep	CDS	28849578	28849644	.	-	2	Parent=Os11t0704700-01
Chr11	irgsp1_rep	CDS	28849344	28849508	.	-	1	Parent=Os11t0704700-01
Chr11	irgsp1_rep	CDS	28848597	28848664	.	-	1	Parent=Os11t0704700-01
Chr11	irgsp1_rep	CDS	28848458	28848524	.	-	2	Parent=Os11t0704700-01
Chr11	irgsp1_rep	CDS	28848219	28848386	.	-	1	Parent=Os11t0704700-01
Chr11	irgsp1_rep	CDS	28847678	28847745	.	-	1	Parent=Os11t0704700-01
Chr11	irgsp1_rep	CDS	28847541	28847607	.	-	2	Parent=Os11t0704700-01
Chr11	irgsp1_rep	CDS	28847299	28847469	.	-	1	Parent=Os11t0704700-01
Chr11	irgsp1_rep	CDS	28846285	28846363	.	-	1	Parent=Os11t0704700-01
Chr11	irgsp1_rep	three_prime_UTR	28846127	28846284	.	-	.	Parent=Os11t0704700-01
Chr11	irgsp1_rep	mRNA	28853530	28857356	.	-	.	ID=Os11t0704800-01;Name=Os11t0704800-01;Locus_id=Os11g0704800;Oryzabase Gene Symbol Synonym(s)=OsRhmbd18%2C RHMBD18;Oryzabase Gene Name Synonym(s)=Rhomboid 18%2C RHOMBOID 18;Note=Similar to Membrane protein.;Transcript_evidence=AK109134 (DDBJ%2C Best hit);ORF_evidence=NP_180469.3 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Cellular Component: integral to membrane (GO:0016021),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S54%2C rhomboid (IPR002610),Peptidase S54%2C rhomboid domain (IPR022764);NIAS_FLcDNA=002-155-E01;Oryzabase=20074;Expression=AK109134;TENOR=Os11t0704800-01;KEGG=Os11t0704800-01
Chr11	irgsp1_rep	five_prime_UTR	28857247	28857356	.	-	.	Parent=Os11t0704800-01
Chr11	irgsp1_rep	CDS	28856960	28857246	.	-	0	Parent=Os11t0704800-01
Chr11	irgsp1_rep	CDS	28855375	28855538	.	-	1	Parent=Os11t0704800-01
Chr11	irgsp1_rep	CDS	28854767	28854930	.	-	2	Parent=Os11t0704800-01
Chr11	irgsp1_rep	CDS	28854394	28854653	.	-	0	Parent=Os11t0704800-01
Chr11	irgsp1_rep	CDS	28854165	28854291	.	-	1	Parent=Os11t0704800-01
Chr11	irgsp1_rep	CDS	28853718	28853840	.	-	0	Parent=Os11t0704800-01
Chr11	irgsp1_rep	three_prime_UTR	28853530	28853717	.	-	.	Parent=Os11t0704800-01
Chr11	irgsp1_rep	mRNA	28870115	28872329	.	+	.	ID=Os11t0705200-01;Name=Os11t0705200-01;Locus_id=Os11g0705200;CGSNL Gene Symbol=GRAS46;CGSNL Gene Name=GRAS PROTEIN 46;Oryzabase Gene Symbol Synonym(s)=OsGRAS44%2C OsGRAS-44%2C GRAS-44%2C GRAS44%2C OsGRAS-46%2C OsGRAS46%2C GRAS-46;Oryzabase Gene Name Synonym(s)=GRAS family transcription factor domain-containing protein 44%2C GRAS protein 46;Note=Similar to Scarecrow-like 9 (Fragment).;Transcript_evidence=AK102199 (DDBJ%2C Best hit);ORF_evidence=Q53MB5 (UniProt);InterPro=Transcription factor GRAS (IPR005202);NIAS_FLcDNA=J033087D22;Oryzabase=22778;Expression=AK102199;TENOR=Os11t0705200-01;KEGG=Os11t0705200-01
Chr11	irgsp1_rep	five_prime_UTR	28870115	28870163	.	+	.	Parent=Os11t0705200-01
Chr11	irgsp1_rep	CDS	28870164	28872242	.	+	0	Parent=Os11t0705200-01
Chr11	irgsp1_rep	three_prime_UTR	28872243	28872329	.	+	.	Parent=Os11t0705200-01
Chr11	irgsp1_rep	mRNA	28891375	28893521	.	+	.	ID=Os11t0705900-01;Name=Os11t0705900-01;Locus_id=Os11g0705900;CGSNL Gene Symbol=GRAS48;CGSNL Gene Name=GRAS PROTEIN 48;Oryzabase Gene Symbol Synonym(s)=OsGRAS-48%2C OsGRAS48%2C GRAS-48;Oryzabase Gene Name Synonym(s)=GRAS protein 48;Note=GRAS transcription factor domain containing protein.;Transcript_evidence=AK063519 (DDBJ%2C Best hit);ORF_evidence=Q53MB5 (UniProt);InterPro=Transcription factor GRAS (IPR005202);NIAS_FLcDNA=001-116-H06;Oryzabase=22801;Expression=AK063519;TENOR=Os11t0705900-01;KEGG=Os11t0705900-01
Chr11	irgsp1_rep	five_prime_UTR	28891375	28891435	.	+	.	Parent=Os11t0705900-01
Chr11	irgsp1_rep	CDS	28891436	28893364	.	+	0	Parent=Os11t0705900-01
Chr11	irgsp1_rep	three_prime_UTR	28893365	28893521	.	+	.	Parent=Os11t0705900-01
Chr11	irgsp1_rep	mRNA	28901684	28904658	.	-	.	ID=Os11t0706100-01;Name=Os11t0706100-01;Locus_id=Os11g0706100;Note=Protein of unknown function DUF37 domain containing protein.;Transcript_evidence=AK070611 (DDBJ%2C Best hit);ORF_evidence=Q53MC0 (UniProt);InterPro=Protein of unknown function DUF37 (IPR002696);NIAS_FLcDNA=J023062P12;TENOR=Os11t0706100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	28904522	28904658	.	-	.	Parent=Os11t0706100-01
Chr11	irgsp1_rep	five_prime_UTR	28902891	28903697	.	-	.	Parent=Os11t0706100-01
Chr11	irgsp1_rep	CDS	28902746	28902890	.	-	0	Parent=Os11t0706100-01
Chr11	irgsp1_rep	CDS	28902583	28902641	.	-	2	Parent=Os11t0706100-01
Chr11	irgsp1_rep	three_prime_UTR	28902576	28902582	.	-	.	Parent=Os11t0706100-01
Chr11	irgsp1_rep	three_prime_UTR	28901684	28902171	.	-	.	Parent=Os11t0706100-01
Chr11	irgsp1_rep	mRNA	28898420	28904653	.	-	.	ID=Os11t0706100-02;Name=Os11t0706100-02;Locus_id=Os11g0706100;Note=Protein of unknown function DUF37 family protein.;Transcript_evidence=AK102439 (DDBJ%2C Best hit);ORF_evidence=longestORF;InterPro=Protein of unknown function DUF37 (IPR002696);NIAS_FLcDNA=J033093K10;Expression=AK102439;TENOR=Os11t0706100-02;KEGG=Os11t0706100-02
Chr11	irgsp1_rep	five_prime_UTR	28904574	28904653	.	-	.	Parent=Os11t0706100-02
Chr11	irgsp1_rep	CDS	28904522	28904573	.	-	0	Parent=Os11t0706100-02
Chr11	irgsp1_rep	CDS	28903626	28903697	.	-	2	Parent=Os11t0706100-02
Chr11	irgsp1_rep	CDS	28903003	28903062	.	-	2	Parent=Os11t0706100-02
Chr11	irgsp1_rep	CDS	28902746	28902886	.	-	2	Parent=Os11t0706100-02
Chr11	irgsp1_rep	CDS	28902583	28902641	.	-	2	Parent=Os11t0706100-02
Chr11	irgsp1_rep	three_prime_UTR	28902576	28902582	.	-	.	Parent=Os11t0706100-02
Chr11	irgsp1_rep	three_prime_UTR	28901343	28902171	.	-	.	Parent=Os11t0706100-02
Chr11	irgsp1_rep	three_prime_UTR	28901002	28901250	.	-	.	Parent=Os11t0706100-02
Chr11	irgsp1_rep	three_prime_UTR	28899655	28900825	.	-	.	Parent=Os11t0706100-02
Chr11	irgsp1_rep	three_prime_UTR	28898844	28899530	.	-	.	Parent=Os11t0706100-02
Chr11	irgsp1_rep	three_prime_UTR	28898420	28898664	.	-	.	Parent=Os11t0706100-02
Chr11	irgsp1_rep	mRNA	28897174	28904610	.	-	.	ID=Os11t0706100-03;Name=Os11t0706100-03;Locus_id=Os11g0706100;Note=Protein of unknown function DUF37 family protein.;Transcript_evidence=AK120985 (DDBJ%2C Best hit);ORF_evidence=longestORF;InterPro=Protein of unknown function DUF37 (IPR002696);NIAS_FLcDNA=J023042E02;Expression=AK120985;TENOR=Os11t0706100-03;KEGG=Os11t0706100-03
Chr11	irgsp1_rep	five_prime_UTR	28904574	28904610	.	-	.	Parent=Os11t0706100-03
Chr11	irgsp1_rep	CDS	28904522	28904573	.	-	0	Parent=Os11t0706100-03
Chr11	irgsp1_rep	CDS	28903626	28903697	.	-	2	Parent=Os11t0706100-03
Chr11	irgsp1_rep	CDS	28903003	28903062	.	-	2	Parent=Os11t0706100-03
Chr11	irgsp1_rep	CDS	28902746	28902886	.	-	2	Parent=Os11t0706100-03
Chr11	irgsp1_rep	CDS	28902583	28902641	.	-	2	Parent=Os11t0706100-03
Chr11	irgsp1_rep	three_prime_UTR	28902576	28902582	.	-	.	Parent=Os11t0706100-03
Chr11	irgsp1_rep	three_prime_UTR	28901343	28902171	.	-	.	Parent=Os11t0706100-03
Chr11	irgsp1_rep	three_prime_UTR	28901002	28901250	.	-	.	Parent=Os11t0706100-03
Chr11	irgsp1_rep	three_prime_UTR	28899655	28900825	.	-	.	Parent=Os11t0706100-03
Chr11	irgsp1_rep	three_prime_UTR	28898844	28899569	.	-	.	Parent=Os11t0706100-03
Chr11	irgsp1_rep	three_prime_UTR	28898148	28898664	.	-	.	Parent=Os11t0706100-03
Chr11	irgsp1_rep	three_prime_UTR	28897514	28897660	.	-	.	Parent=Os11t0706100-03
Chr11	irgsp1_rep	three_prime_UTR	28897174	28897421	.	-	.	Parent=Os11t0706100-03
Chr11	irgsp1_rep	mRNA	28899015	28900796	.	+	.	ID=Os11t0706200-01;Name=Os11t0706200-01;Locus_id=Os11g0706200;RAP-DB Gene Symbol Synonym(s)=DHD1;RAP-DB Gene Name Synonym(s)=Delayed Heading Date1;CGSNL Gene Symbol=GRAS50;CGSNL Gene Name=GRAS PROTEIN 50;Oryzabase Gene Symbol Synonym(s)=OsGRAS-50%2C OsGRAS50%2C GRAS-50;Oryzabase Gene Name Synonym(s)=GRAS protein 50;Note=GRAS protein%2C Regulation of heading date and yield;Transcript_evidence=Inferred from literature;ORF_evidence=Q53MB2;InterPro=Transcription factor GRAS (IPR005202);Manual Curation=January 24%2C 2019;Literature_PMID=30107076;Oryzabase=22803;TENOR=Os11t0706200-00;KEGG=Os11t0706200-00;Subcellular location=nucleus (GO:0005634)
Chr11	irgsp1_rep	CDS	28899015	28900796	.	+	0	Parent=Os11t0706200-01
Chr11	irgsp1_rep	mRNA	28918916	28919760	.	-	.	ID=Os11t0706600-00;Name=Os11t0706600-00;Locus_id=Os11g0706600;Note=Thaumatin-like protein.;Transcript_evidence=Q53MB8 (UniProt);ORF_evidence=Q53MB8 (UniProt);InterPro=Thaumatin%2C pathogenesis-related (IPR001938),Thaumatin%2C conserved site (IPR017949);TENOR=Os11t0706600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	28919703	28919760	.	-	0	Parent=Os11t0706600-00
Chr11	irgsp1_rep	CDS	28918916	28919619	.	-	2	Parent=Os11t0706600-00
Chr11	irgsp1_rep	mRNA	28918932	28919582	.	+	.	ID=Os11t0706700-00;Name=Os11t0706700-00;Locus_id=Os11g0706700;Note=Hypothetical protein.;Transcript_evidence=EU967040 (DDBJ);ORF_evidence=longestORF;TENOR=Os11t0706700-00
Chr11	irgsp1_rep	five_prime_UTR	28918932	28918933	.	+	.	Parent=Os11t0706700-00
Chr11	irgsp1_rep	CDS	28918934	28919581	.	+	0	Parent=Os11t0706700-00
Chr11	irgsp1_rep	three_prime_UTR	28919582	28919582	.	+	.	Parent=Os11t0706700-00
Chr11	irgsp1_rep	mRNA	28921418	28923592	.	-	.	ID=Os11t0706801-00;Name=Os11t0706801-00;Locus_id=Os11g0706801;CGSNL Gene Symbol=CYCD7%3B1;CGSNL Gene Name=CYCLIN-D7-1;Oryzabase Gene Symbol Synonym(s)=CycD7%3B1%2C CycD7%3Bos%3B1%2C Orysa%3BCycD7%3B1%2C OsCYCD3%2C CYCD3;Oryzabase Gene Name Synonym(s)=D-type cyclin 7%3B1;Note=Putative cyclin-D7-1.;Transcript_evidence=Q53MB7 (UniProt);ORF_evidence=Q53MB7 (UniProt);GO=Cellular Component: nucleus (GO:0005634);InterPro=Cyclin%2C C-terminal (IPR004367),Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763);Oryzabase=13273;TENOR=Os11t0706801-00
Chr11	irgsp1_rep	CDS	28923311	28923592	.	-	0	Parent=Os11t0706801-00
Chr11	irgsp1_rep	CDS	28922986	28923072	.	-	0	Parent=Os11t0706801-00
Chr11	irgsp1_rep	CDS	28922787	28922885	.	-	0	Parent=Os11t0706801-00
Chr11	irgsp1_rep	CDS	28922350	28922643	.	-	0	Parent=Os11t0706801-00
Chr11	irgsp1_rep	CDS	28921418	28921618	.	-	0	Parent=Os11t0706801-00
Chr11	irgsp1_rep	mRNA	28932977	28936031	.	-	.	ID=Os11t0707000-01;Name=Os11t0707000-01;Locus_id=Os11g0707000;Oryzabase Gene Symbol Synonym(s)=OsRcaII%2C rca%2C RCAII%2C rcaII%2C OsRcaI%2C RCAI%2C ME137%2C OsRCA1%2C RCA%2C RCAalpha;Oryzabase Gene Name Synonym(s)=Rubisco activase%2C the small isoform of rice Rubisco activase%2C Rubisco activase small isoform%2C "ribulose-1%2C 5-bisphosphate carboxylase/oxygenase activase"%2C Rubisco activase II%2C Rubisco activase large isoform%2C Rubisco activase I%2C Rubisco-A%2C RuBisCO activase A1;Note=Similar to Ribulose bisphosphate carboxylase/oxygenase activase%2C chloroplastic.;Transcript_evidence=AK104332 (DDBJ%2C Best hit);ORF_evidence=P93431 (UniProt);NIAS_FLcDNA=001-032-F04;Oryzabase=9611;TENOR=Os11t0707000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	28935970	28936031	.	-	.	Parent=Os11t0707000-01
Chr11	irgsp1_rep	CDS	28935934	28935969	.	-	0	Parent=Os11t0707000-01
Chr11	irgsp1_rep	CDS	28935597	28935834	.	-	0	Parent=Os11t0707000-01
Chr11	irgsp1_rep	CDS	28935536	28935558	.	-	2	Parent=Os11t0707000-01
Chr11	irgsp1_rep	CDS	28935258	28935422	.	-	0	Parent=Os11t0707000-01
Chr11	irgsp1_rep	three_prime_UTR	28935231	28935257	.	-	.	Parent=Os11t0707000-01
Chr11	irgsp1_rep	three_prime_UTR	28934673	28935145	.	-	.	Parent=Os11t0707000-01
Chr11	irgsp1_rep	three_prime_UTR	28934299	28934580	.	-	.	Parent=Os11t0707000-01
Chr11	irgsp1_rep	three_prime_UTR	28933869	28933953	.	-	.	Parent=Os11t0707000-01
Chr11	irgsp1_rep	three_prime_UTR	28932977	28933266	.	-	.	Parent=Os11t0707000-01
Chr11	irgsp1_rep	mRNA	28932985	28936031	.	-	.	ID=Os11t0707000-02;Name=Os11t0707000-02;Locus_id=Os11g0707000;Oryzabase Gene Symbol Synonym(s)=OsRcaII%2C rca%2C RCAII%2C rcaII%2C OsRcaI%2C RCAI%2C ME137%2C OsRCA1%2C RCA%2C RCAalpha;Oryzabase Gene Name Synonym(s)=Rubisco activase%2C the small isoform of rice Rubisco activase%2C Rubisco activase small isoform%2C "ribulose-1%2C 5-bisphosphate carboxylase/oxygenase activase"%2C Rubisco activase II%2C Rubisco activase large isoform%2C Rubisco activase I%2C Rubisco-A%2C RuBisCO activase A1;Note=Ribulose-bisphosphate carboxylase activase (EC 6.3.4.-) (Fragments).;Transcript_evidence=AK119513 (DDBJ%2C Best hit),AK060847 (DDBJ%2C Best hit),AK064986 (DDBJ%2C Best hit);ORF_evidence=P93431 (UniProt);NIAS_FLcDNA=001-200-F01,001-034-E04,J013001C24;Oryzabase=9611;TENOR=Os11t0707000-02;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	28935970	28936031	.	-	.	Parent=Os11t0707000-02
Chr11	irgsp1_rep	CDS	28935934	28935969	.	-	0	Parent=Os11t0707000-02
Chr11	irgsp1_rep	CDS	28935536	28935834	.	-	0	Parent=Os11t0707000-02
Chr11	irgsp1_rep	CDS	28935231	28935422	.	-	1	Parent=Os11t0707000-02
Chr11	irgsp1_rep	CDS	28934673	28935145	.	-	1	Parent=Os11t0707000-02
Chr11	irgsp1_rep	CDS	28934299	28934580	.	-	2	Parent=Os11t0707000-02
Chr11	irgsp1_rep	CDS	28933934	28933953	.	-	2	Parent=Os11t0707000-02
Chr11	irgsp1_rep	three_prime_UTR	28933869	28933933	.	-	.	Parent=Os11t0707000-02
Chr11	irgsp1_rep	three_prime_UTR	28932985	28933266	.	-	.	Parent=Os11t0707000-02
Chr11	irgsp1_rep	mRNA	28933010	28935716	.	-	.	ID=Os11t0707000-03;Name=Os11t0707000-03;Locus_id=Os11g0707000;Oryzabase Gene Symbol Synonym(s)=OsRcaII%2C rca%2C RCAII%2C rcaII%2C OsRcaI%2C RCAI%2C ME137%2C OsRCA1%2C RCA%2C RCAalpha;Oryzabase Gene Name Synonym(s)=Rubisco activase%2C the small isoform of rice Rubisco activase%2C Rubisco activase small isoform%2C "ribulose-1%2C 5-bisphosphate carboxylase/oxygenase activase"%2C Rubisco activase II%2C Rubisco activase large isoform%2C Rubisco activase I%2C Rubisco-A%2C RuBisCO activase A1;Note=Similar to Ribulose bisphosphate carboxylase/oxygenase activase%2C chloroplastic.;Transcript_evidence=AK060841 (DDBJ%2C Best hit);ORF_evidence=P93431 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=ATPase%2C AAA-type%2C core (IPR003959);NIAS_FLcDNA=001-034-D05;Oryzabase=9611;Expression=AK060841;TENOR=Os11t0707000-03;KEGG=Os11t0707000-03
Chr11	irgsp1_rep	five_prime_UTR	28935715	28935716	.	-	.	Parent=Os11t0707000-03
Chr11	irgsp1_rep	CDS	28935536	28935714	.	-	0	Parent=Os11t0707000-03
Chr11	irgsp1_rep	CDS	28935231	28935422	.	-	1	Parent=Os11t0707000-03
Chr11	irgsp1_rep	CDS	28934673	28935145	.	-	1	Parent=Os11t0707000-03
Chr11	irgsp1_rep	CDS	28934299	28934580	.	-	2	Parent=Os11t0707000-03
Chr11	irgsp1_rep	CDS	28933934	28933953	.	-	2	Parent=Os11t0707000-03
Chr11	irgsp1_rep	three_prime_UTR	28933869	28933933	.	-	.	Parent=Os11t0707000-03
Chr11	irgsp1_rep	three_prime_UTR	28933010	28933266	.	-	.	Parent=Os11t0707000-03
Chr11	irgsp1_rep	mRNA	28932977	28933160	.	-	.	ID=Os11t0707000-04;Name=Os11t0707000-04;Locus_id=Os11g0707000;Oryzabase Gene Symbol Synonym(s)=OsRcaII%2C rca%2C RCAII%2C rcaII%2C OsRcaI%2C RCAI%2C ME137%2C OsRCA1%2C RCA%2C RCAalpha;Oryzabase Gene Name Synonym(s)=Rubisco activase%2C the small isoform of rice Rubisco activase%2C Rubisco activase small isoform%2C "ribulose-1%2C 5-bisphosphate carboxylase/oxygenase activase"%2C Rubisco activase II%2C Rubisco activase large isoform%2C Rubisco activase I%2C Rubisco-A%2C RuBisCO activase A1;Note=Non-protein coding transcript.;Transcript_evidence=AK058310 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-013-H09;Oryzabase=9611;TENOR=Os11t0707000-04
Chr11	irgsp1_rep	exon	28932977	28933160	.	-	.	Parent=Os11t0707000-04
Chr11	irgsp1_rep	mRNA	28938028	28938246	.	-	.	ID=Os11t0707050-00;Name=Os11t0707050-00;Locus_id=Os11g0707050;Note=Similar to Chloroplast ribulose-1%2C5-bisphosphate carboxylase/oxygenase activase large protein isoform.;Transcript_evidence=ab initio prediction;ORF_evidence=Q06B48 (UniProt);TENOR=Os11t0707050-00
Chr11	irgsp1_rep	CDS	28938028	28938246	.	-	0	Parent=Os11t0707050-00
Chr11	irgsp1_rep	mRNA	28938253	28939239	.	-	.	ID=Os11t0707100-00;Name=Os11t0707100-00;Locus_id=Os11g0707100;Note=Hypothetical conserved gene.;Transcript_evidence=DQ984669 (DDBJ);ORF_evidence=Q42450 (UniProt);TENOR=Os11t0707100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	28938883	28939239	.	-	.	Parent=Os11t0707100-00
Chr11	irgsp1_rep	CDS	28938280	28938882	.	-	0	Parent=Os11t0707100-00
Chr11	irgsp1_rep	three_prime_UTR	28938253	28938279	.	-	.	Parent=Os11t0707100-00
Chr11	irgsp1_rep	mRNA	28947700	28948437	.	-	.	ID=Os11t0707300-00;Name=Os11t0707300-00;Locus_id=Os11g0707300;Oryzabase Gene Name Synonym(s)=EPF zinc-finger%2C plant-specific EPF subclass Cys2-His2 zinc-finger protein;Note=Similar to Transcriptional regulator SUPERMAN.;Transcript_evidence=AJ577365 (DDBJ);ORF_evidence=F1DJV4 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);Oryzabase=20538;TENOR=Os11t0707300-00;KEGG=Os11t0707300-00
Chr11	irgsp1_rep	CDS	28947700	28948437	.	-	0	Parent=Os11t0707300-00
Chr11	irgsp1_rep	mRNA	28952804	28953271	.	-	.	ID=Os11t0707450-00;Name=Os11t0707450-00;Locus_id=Os11g0707450;Note=Conserved hypothetical protein.;Transcript_evidence=FP095164 (DDBJ);ORF_evidence=NP_001048839.1 (RefSeq);TENOR=Os11t0707450-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	CDS	28952978	28953271	.	-	0	Parent=Os11t0707450-00
Chr11	irgsp1_rep	three_prime_UTR	28952804	28952977	.	-	.	Parent=Os11t0707450-00
Chr11	irgsp1_rep	mRNA	28954016	28957187	.	-	.	ID=Os11t0707600-01;Name=Os11t0707600-01;Locus_id=Os11g0707600;Oryzabase Gene Symbol Synonym(s)=OsGL1-11;Oryzabase Gene Name Synonym(s)=Glossy1-homologous gene 11;Note=Similar to Sterol 4-alpha-methyl-oxidase (Fragment).;Transcript_evidence=AK060049 (DDBJ%2C Best hit);ORF_evidence=Q53NV4 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Fatty acid hydroxylase (IPR006694);NIAS_FLcDNA=006-304-H12;Oryzabase=15285;Expression=AK060049;TENOR=Os11t0707600-01;KEGG=Os11t0707600-01 (EC:1.14.13.72)
Chr11	irgsp1_rep	five_prime_UTR	28957073	28957187	.	-	.	Parent=Os11t0707600-01
Chr11	irgsp1_rep	CDS	28957040	28957072	.	-	0	Parent=Os11t0707600-01
Chr11	irgsp1_rep	CDS	28956759	28956896	.	-	0	Parent=Os11t0707600-01
Chr11	irgsp1_rep	CDS	28955084	28955229	.	-	0	Parent=Os11t0707600-01
Chr11	irgsp1_rep	CDS	28954886	28955005	.	-	1	Parent=Os11t0707600-01
Chr11	irgsp1_rep	CDS	28954592	28954804	.	-	1	Parent=Os11t0707600-01
Chr11	irgsp1_rep	CDS	28954425	28954505	.	-	1	Parent=Os11t0707600-01
Chr11	irgsp1_rep	CDS	28954273	28954342	.	-	1	Parent=Os11t0707600-01
Chr11	irgsp1_rep	three_prime_UTR	28954016	28954272	.	-	.	Parent=Os11t0707600-01
Chr11	irgsp1_rep	mRNA	28953922	28957142	.	-	.	ID=Os11t0707600-02;Name=Os11t0707600-02;Locus_id=Os11g0707600;Oryzabase Gene Symbol Synonym(s)=OsGL1-11;Oryzabase Gene Name Synonym(s)=Glossy1-homologous gene 11;Note=Similar to Sterol 4-alpha-methyl-oxidase (Fragment).;Transcript_evidence=AK102938 (DDBJ%2C Best hit);ORF_evidence=Q53NV4 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Fatty acid hydroxylase (IPR006694);NIAS_FLcDNA=J033114J20;Oryzabase=15285;Expression=AK102938;TENOR=Os11t0707600-02;KEGG=Os11t0707600-02 (EC:1.14.13.72)
Chr11	irgsp1_rep	five_prime_UTR	28957073	28957142	.	-	.	Parent=Os11t0707600-02
Chr11	irgsp1_rep	CDS	28957040	28957072	.	-	0	Parent=Os11t0707600-02
Chr11	irgsp1_rep	CDS	28956759	28956896	.	-	0	Parent=Os11t0707600-02
Chr11	irgsp1_rep	CDS	28955084	28955229	.	-	0	Parent=Os11t0707600-02
Chr11	irgsp1_rep	CDS	28954886	28955005	.	-	1	Parent=Os11t0707600-02
Chr11	irgsp1_rep	CDS	28954592	28954804	.	-	1	Parent=Os11t0707600-02
Chr11	irgsp1_rep	CDS	28954425	28954505	.	-	1	Parent=Os11t0707600-02
Chr11	irgsp1_rep	CDS	28954273	28954342	.	-	1	Parent=Os11t0707600-02
Chr11	irgsp1_rep	three_prime_UTR	28953922	28954272	.	-	.	Parent=Os11t0707600-02
Chr11	irgsp1_rep	mRNA	28957910	28960502	.	-	.	ID=Os11t0707700-01;Name=Os11t0707700-01;Locus_id=Os11g0707700;Note=Similar to Elongin C (Fragment).;Transcript_evidence=AK064106 (DDBJ%2C Best hit);ORF_evidence=B6TM10 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);InterPro=SKP1 component (IPR001232),BTB/POZ fold (IPR011333),SKP1 component%2C POZ (IPR016073);NIAS_FLcDNA=002-101-E06;Expression=AK064106;TENOR=Os11t0707700-01;KEGG=Os11t0707700-01
Chr11	irgsp1_rep	five_prime_UTR	28960410	28960502	.	-	.	Parent=Os11t0707700-01
Chr11	irgsp1_rep	CDS	28960223	28960409	.	-	0	Parent=Os11t0707700-01
Chr11	irgsp1_rep	CDS	28960023	28960128	.	-	2	Parent=Os11t0707700-01
Chr11	irgsp1_rep	CDS	28958156	28958237	.	-	1	Parent=Os11t0707700-01
Chr11	irgsp1_rep	three_prime_UTR	28957910	28958155	.	-	.	Parent=Os11t0707700-01
Chr11	irgsp1_rep	mRNA	28961344	28965025	.	+	.	ID=Os11t0707800-01;Name=Os11t0707800-01;Locus_id=Os11g0707800;Oryzabase Gene Symbol Synonym(s)=OsUCP2;Oryzabase Gene Name Synonym(s)=uncoupling protein 2;Note=Uncoupling protein.;Transcript_evidence=AK061318 (DDBJ%2C Best hit),AK104090 (DDBJ%2C Best hit);ORF_evidence=Q9AVG1 (UniProt);GO=Biological Process: mitochondrial transport (GO:0006839),Cellular Component: mitochondrion (GO:0005739),Cellular Component: membrane (GO:0016020),Molecular Function: binding (GO:0005488);InterPro=Mitochondrial brown fat uncoupling protein (IPR002030),Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=006-302-D12,001-031-B06;Oryzabase=14513;TENOR=Os11t0707800-01
Chr11	irgsp1_rep	five_prime_UTR	28961344	28961412	.	+	.	Parent=Os11t0707800-01
Chr11	irgsp1_rep	CDS	28961413	28961493	.	+	0	Parent=Os11t0707800-01
Chr11	irgsp1_rep	CDS	28961616	28961825	.	+	0	Parent=Os11t0707800-01
Chr11	irgsp1_rep	CDS	28961914	28961992	.	+	0	Parent=Os11t0707800-01
Chr11	irgsp1_rep	CDS	28962070	28962203	.	+	2	Parent=Os11t0707800-01
Chr11	irgsp1_rep	CDS	28962295	28962393	.	+	0	Parent=Os11t0707800-01
Chr11	irgsp1_rep	CDS	28962486	28962590	.	+	0	Parent=Os11t0707800-01
Chr11	irgsp1_rep	CDS	28963225	28963299	.	+	0	Parent=Os11t0707800-01
Chr11	irgsp1_rep	CDS	28964519	28964605	.	+	0	Parent=Os11t0707800-01
Chr11	irgsp1_rep	CDS	28964702	28964737	.	+	0	Parent=Os11t0707800-01
Chr11	irgsp1_rep	three_prime_UTR	28964738	28965025	.	+	.	Parent=Os11t0707800-01
Chr11	irgsp1_rep	mRNA	28965325	28967139	.	-	.	ID=Os11t0707900-01;Name=Os11t0707900-01;Locus_id=Os11g0707900;Note=Protein of unknown function DUF740 family protein.;Transcript_evidence=AK105585 (DDBJ%2C Best hit);ORF_evidence=Q53NW3 (UniProt);InterPro=Uncharacterised protein family UPF0503 (IPR008004);NIAS_FLcDNA=001-129-A01;Expression=AK105585;TENOR=Os11t0707900-01;KEGG=Os11t0707900-01
Chr11	irgsp1_rep	five_prime_UTR	28967072	28967139	.	-	.	Parent=Os11t0707900-01
Chr11	irgsp1_rep	CDS	28965713	28967071	.	-	0	Parent=Os11t0707900-01
Chr11	irgsp1_rep	three_prime_UTR	28965325	28965712	.	-	.	Parent=Os11t0707900-01
Chr11	irgsp1_rep	mRNA	28965420	28967046	.	-	.	ID=Os11t0707900-02;Name=Os11t0707900-02;Locus_id=Os11g0707900;Note=Uncharacterised protein family UPF0503 domain containing protein.;Transcript_evidence=AK072181 (DDBJ%2C Best hit);ORF_evidence=Q53NW3 (UniProt);InterPro=Uncharacterised protein family UPF0503 (IPR008004);NIAS_FLcDNA=J013140E05;TENOR=Os11t0707900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	28967045	28967046	.	-	.	Parent=Os11t0707900-02
Chr11	irgsp1_rep	CDS	28965713	28967044	.	-	0	Parent=Os11t0707900-02
Chr11	irgsp1_rep	three_prime_UTR	28965420	28965712	.	-	.	Parent=Os11t0707900-02
Chr11	irgsp1_rep	mRNA	28973142	28977761	.	-	.	ID=Os11t0708000-01;Name=Os11t0708000-01;Locus_id=Os11g0708000;Note=Hypothetical protein.;Transcript_evidence=AK120102 (DDBJ%2C Best hit),AK072065 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013022N13,J013108P03;TENOR=Os11t0708000-01;KEGG=Os11t0708000-01
Chr11	irgsp1_rep	five_prime_UTR	28977494	28977761	.	-	.	Parent=Os11t0708000-01
Chr11	irgsp1_rep	CDS	28977167	28977493	.	-	0	Parent=Os11t0708000-01
Chr11	irgsp1_rep	three_prime_UTR	28977046	28977166	.	-	.	Parent=Os11t0708000-01
Chr11	irgsp1_rep	three_prime_UTR	28976782	28976848	.	-	.	Parent=Os11t0708000-01
Chr11	irgsp1_rep	three_prime_UTR	28973829	28974121	.	-	.	Parent=Os11t0708000-01
Chr11	irgsp1_rep	three_prime_UTR	28973142	28973758	.	-	.	Parent=Os11t0708000-01
Chr11	irgsp1_rep	mRNA	28973283	28977329	.	-	.	ID=Os11t0708000-03;Name=Os11t0708000-03;Locus_id=Os11g0708000;Note=Hypothetical gene.;Transcript_evidence=AK061560 (DDBJ%2C Best hit),AK061756 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=006-311-D05,001-039-A05;Expression=AK061560;TENOR=Os11t0708000-03;KEGG=Os11t0708000-03
Chr11	irgsp1_rep	five_prime_UTR	28977267	28977329	.	-	.	Parent=Os11t0708000-03
Chr11	irgsp1_rep	CDS	28977046	28977266	.	-	0	Parent=Os11t0708000-03
Chr11	irgsp1_rep	CDS	28976836	28976848	.	-	1	Parent=Os11t0708000-03
Chr11	irgsp1_rep	three_prime_UTR	28976782	28976835	.	-	.	Parent=Os11t0708000-03
Chr11	irgsp1_rep	three_prime_UTR	28973829	28974121	.	-	.	Parent=Os11t0708000-03
Chr11	irgsp1_rep	three_prime_UTR	28973283	28973758	.	-	.	Parent=Os11t0708000-03
Chr11	irgsp1_rep	mRNA	28975000	28976334	.	+	.	ID=Os11t0708100-01;Name=Os11t0708100-01;Locus_id=Os11g0708100;CGSNL Gene Symbol=LAC26;CGSNL Gene Name=LACCASE 26;Oryzabase Gene Symbol Synonym(s)=OsLAC26;Oryzabase Gene Name Synonym(s)=laccase 26;Note=Similar to Laccase-22.;Transcript_evidence=AK060544 (DDBJ%2C Best hit);ORF_evidence=Q0IQU1 (UniProt);GO=Biological Process: lignin catabolic process (GO:0046274),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: apoplast (GO:0048046),Molecular Function: copper ion binding (GO:0005507),Molecular Function: laccase activity (GO:0008471),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Multicopper oxidase%2C type 1 (IPR001117),Cupredoxin (IPR008972),Multicopper oxidase%2C type 2 (IPR011706),Laccase (IPR017761);NIAS_FLcDNA=001-021-F03;Oryzabase=18569;TENOR=Os11t0708100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr11	irgsp1_rep	five_prime_UTR	28975000	28975001	.	+	.	Parent=Os11t0708100-01
Chr11	irgsp1_rep	CDS	28975002	28975856	.	+	0	Parent=Os11t0708100-01
Chr11	irgsp1_rep	three_prime_UTR	28975857	28976334	.	+	.	Parent=Os11t0708100-01
Chr11	irgsp1_rep	mRNA	28983109	28985703	.	+	.	ID=Os11t0708400-01;Name=Os11t0708400-01;Locus_id=Os11g0708400;CGSNL Gene Symbol=GELP112;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 112;Oryzabase Gene Symbol Synonym(s)=OsGELP112%2C WDL1;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 112%2C wilted dwarf and lethal 1;Note=Similar to CPRD49.;Transcript_evidence=AK067429 (DDBJ%2C Best hit),AK109413 (DDBJ%2C Best hit);ORF_evidence=E7DDW2 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087),Esterase%2C SGNH hydrolase-type (IPR013830),Esterase%2C SGNH hydrolase-type%2C subgroup (IPR013831);NIAS_FLcDNA=J013107K09,006-303-H10;Oryzabase=11062;TENOR=Os11t0708400-01
Chr11	irgsp1_rep	five_prime_UTR	28983109	28983249	.	+	.	Parent=Os11t0708400-01
Chr11	irgsp1_rep	CDS	28983250	28983372	.	+	0	Parent=Os11t0708400-01
Chr11	irgsp1_rep	CDS	28984026	28984103	.	+	0	Parent=Os11t0708400-01
Chr11	irgsp1_rep	CDS	28984569	28984709	.	+	0	Parent=Os11t0708400-01
Chr11	irgsp1_rep	CDS	28984772	28984848	.	+	0	Parent=Os11t0708400-01
Chr11	irgsp1_rep	CDS	28984953	28985102	.	+	1	Parent=Os11t0708400-01
Chr11	irgsp1_rep	CDS	28985199	28985412	.	+	1	Parent=Os11t0708400-01
Chr11	irgsp1_rep	three_prime_UTR	28985413	28985703	.	+	.	Parent=Os11t0708400-01
Chr11	irgsp1_rep	mRNA	28983230	28985679	.	+	.	ID=Os11t0708400-02;Name=Os11t0708400-02;Locus_id=Os11g0708400;CGSNL Gene Symbol=GELP112;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 112;Oryzabase Gene Symbol Synonym(s)=OsGELP112%2C WDL1;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 112%2C wilted dwarf and lethal 1;Note=Similar to CPRD49.;Transcript_evidence=AK062013 (DDBJ%2C Best hit);ORF_evidence=E7DDW2 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087),Esterase%2C SGNH hydrolase-type (IPR013830),Esterase%2C SGNH hydrolase-type%2C subgroup (IPR013831);NIAS_FLcDNA=001-043-E11;Oryzabase=11062;Expression=AK062013;TENOR=Os11t0708400-02;KEGG=Os11t0708400-02
Chr11	irgsp1_rep	five_prime_UTR	28983230	28983249	.	+	.	Parent=Os11t0708400-02
Chr11	irgsp1_rep	CDS	28983250	28983372	.	+	0	Parent=Os11t0708400-02
Chr11	irgsp1_rep	CDS	28984026	28984103	.	+	0	Parent=Os11t0708400-02
Chr11	irgsp1_rep	CDS	28984569	28984709	.	+	0	Parent=Os11t0708400-02
Chr11	irgsp1_rep	CDS	28984772	28984848	.	+	0	Parent=Os11t0708400-02
Chr11	irgsp1_rep	CDS	28984953	28985102	.	+	1	Parent=Os11t0708400-02
Chr11	irgsp1_rep	CDS	28985199	28985412	.	+	1	Parent=Os11t0708400-02
Chr11	irgsp1_rep	three_prime_UTR	28985413	28985679	.	+	.	Parent=Os11t0708400-02
Chr11	irgsp1_rep	mRNA	28987446	28988704	.	+	.	ID=Os11t0708500-01;Name=Os11t0708500-01;Locus_id=Os11g0708500;CGSNL Gene Symbol=PDX1.3C;CGSNL Gene Name=PYRIDOXINE BIOSYNTHESIS PROTEIN 1.3C;Oryzabase Gene Symbol Synonym(s)=OsPDX1.3c%2C OsPDX1.3%2C PDX1.3;Oryzabase Gene Name Synonym(s)=PYRIDOXINE BIOSYNTHESIS PROTEIN1.3c%2C Pyridoxal phosphate synthase protein 1.3;Note=Vitamin B6 biosynthesis protein family protein.;Transcript_evidence=AK063409 (DDBJ%2C Best hit);ORF_evidence=Q3S861 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: pyridoxal phosphate biosynthetic process (GO:0042823),Molecular Function: catalytic activity (GO:0003824);InterPro=Vitamin B6 biosynthesis protein (IPR001852),Ribulose-phosphate binding barrel (IPR011060),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=001-115-A12;Oryzabase=21741;Expression=AK063409;TENOR=Os11t0708500-01;KEGG=Os11t0708500-01 (EC:4.-.-.-)
Chr11	irgsp1_rep	five_prime_UTR	28987446	28987505	.	+	.	Parent=Os11t0708500-01
Chr11	irgsp1_rep	CDS	28987506	28988597	.	+	0	Parent=Os11t0708500-01
Chr11	irgsp1_rep	three_prime_UTR	28988598	28988704	.	+	.	Parent=Os11t0708500-01
Chr11	irgsp1_rep	mRNA	28989486	29000897	.	-	.	ID=Os11t0708600-01;Name=Os11t0708600-01;Locus_id=Os11g0708600;Oryzabase Gene Symbol Synonym(s)=OsMed34_2%2C Med34_2;Oryzabase Gene Name Synonym(s)=Mediator 34_2;Note=Similar to RECQL1 protein.;Transcript_evidence=AK072117 (DDBJ%2C Best hit);ORF_evidence=Q1ERC6 (UniProt);NIAS_FLcDNA=J013123C14;Oryzabase=20988;Expression=AK072117;TENOR=Os11t0708600-01;KEGG=Os11t0708600-01
Chr11	irgsp1_rep	five_prime_UTR	29000619	29000897	.	-	.	Parent=Os11t0708600-01
Chr11	irgsp1_rep	five_prime_UTR	29000204	29000212	.	-	.	Parent=Os11t0708600-01
Chr11	irgsp1_rep	CDS	29000137	29000203	.	-	0	Parent=Os11t0708600-01
Chr11	irgsp1_rep	CDS	28999234	28999459	.	-	2	Parent=Os11t0708600-01
Chr11	irgsp1_rep	CDS	28998840	28998843	.	-	1	Parent=Os11t0708600-01
Chr11	irgsp1_rep	three_prime_UTR	28998697	28998839	.	-	.	Parent=Os11t0708600-01
Chr11	irgsp1_rep	three_prime_UTR	28997656	28997871	.	-	.	Parent=Os11t0708600-01
Chr11	irgsp1_rep	three_prime_UTR	28997113	28997217	.	-	.	Parent=Os11t0708600-01
Chr11	irgsp1_rep	three_prime_UTR	28996924	28997028	.	-	.	Parent=Os11t0708600-01
Chr11	irgsp1_rep	three_prime_UTR	28996420	28996542	.	-	.	Parent=Os11t0708600-01
Chr11	irgsp1_rep	three_prime_UTR	28995360	28995448	.	-	.	Parent=Os11t0708600-01
Chr11	irgsp1_rep	three_prime_UTR	28994408	28994444	.	-	.	Parent=Os11t0708600-01
Chr11	irgsp1_rep	three_prime_UTR	28994274	28994307	.	-	.	Parent=Os11t0708600-01
Chr11	irgsp1_rep	three_prime_UTR	28992930	28992982	.	-	.	Parent=Os11t0708600-01
Chr11	irgsp1_rep	three_prime_UTR	28992774	28992851	.	-	.	Parent=Os11t0708600-01
Chr11	irgsp1_rep	three_prime_UTR	28992626	28992691	.	-	.	Parent=Os11t0708600-01
Chr11	irgsp1_rep	three_prime_UTR	28991963	28992029	.	-	.	Parent=Os11t0708600-01
Chr11	irgsp1_rep	three_prime_UTR	28991550	28991888	.	-	.	Parent=Os11t0708600-01
Chr11	irgsp1_rep	three_prime_UTR	28991334	28991413	.	-	.	Parent=Os11t0708600-01
Chr11	irgsp1_rep	three_prime_UTR	28990366	28990444	.	-	.	Parent=Os11t0708600-01
Chr11	irgsp1_rep	three_prime_UTR	28989891	28990108	.	-	.	Parent=Os11t0708600-01
Chr11	irgsp1_rep	three_prime_UTR	28989486	28989788	.	-	.	Parent=Os11t0708600-01
Chr11	irgsp1_rep	mRNA	28991727	29000858	.	-	.	ID=Os11t0708600-02;Name=Os11t0708600-02;Locus_id=Os11g0708600;Oryzabase Gene Symbol Synonym(s)=OsMed34_2%2C Med34_2;Oryzabase Gene Name Synonym(s)=Mediator 34_2;Note=Similar to ATP-dependent DNA helicase%2C RecQ family protein%2C expressed.;Transcript_evidence=AK066096 (DDBJ%2C Best hit);ORF_evidence=Q2QZ05 (UniProt);GO=Biological Process: DNA recombination (GO:0006310),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=Helicase%2C C-terminal (IPR001650),DNA helicase%2C ATP-dependent%2C RecQ type (IPR004589),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001);NIAS_FLcDNA=J013056N22;Oryzabase=20988;TENOR=Os11t0708600-02
Chr11	irgsp1_rep	five_prime_UTR	29000619	29000858	.	-	.	Parent=Os11t0708600-02
Chr11	irgsp1_rep	five_prime_UTR	29000204	29000212	.	-	.	Parent=Os11t0708600-02
Chr11	irgsp1_rep	CDS	29000137	29000203	.	-	0	Parent=Os11t0708600-02
Chr11	irgsp1_rep	CDS	28999239	28999459	.	-	2	Parent=Os11t0708600-02
Chr11	irgsp1_rep	CDS	28998697	28998843	.	-	0	Parent=Os11t0708600-02
Chr11	irgsp1_rep	CDS	28997656	28997871	.	-	0	Parent=Os11t0708600-02
Chr11	irgsp1_rep	CDS	28997113	28997217	.	-	0	Parent=Os11t0708600-02
Chr11	irgsp1_rep	CDS	28996924	28997028	.	-	0	Parent=Os11t0708600-02
Chr11	irgsp1_rep	CDS	28996420	28996542	.	-	0	Parent=Os11t0708600-02
Chr11	irgsp1_rep	CDS	28995360	28995448	.	-	0	Parent=Os11t0708600-02
Chr11	irgsp1_rep	CDS	28994408	28994444	.	-	1	Parent=Os11t0708600-02
Chr11	irgsp1_rep	CDS	28994274	28994307	.	-	0	Parent=Os11t0708600-02
Chr11	irgsp1_rep	CDS	28992930	28992982	.	-	2	Parent=Os11t0708600-02
Chr11	irgsp1_rep	CDS	28992774	28992851	.	-	0	Parent=Os11t0708600-02
Chr11	irgsp1_rep	CDS	28992626	28992691	.	-	0	Parent=Os11t0708600-02
Chr11	irgsp1_rep	CDS	28991963	28992029	.	-	0	Parent=Os11t0708600-02
Chr11	irgsp1_rep	CDS	28991727	28991888	.	-	2	Parent=Os11t0708600-02
Chr11	irgsp1_rep	mRNA	29012490	29014744	.	+	.	ID=Os11t0708900-01;Name=Os11t0708900-01;Locus_id=Os11g0708900;RAP-DB Gene Symbol Synonym(s)=OsPAL8;RAP-DB Gene Name Synonym(s)=Phenylalanine ammonia-lyase 8;Oryzabase Gene Symbol Synonym(s)=PAL03%2C OsPAL8;Oryzabase Gene Name Synonym(s)=Phenylalanine ammonia-lyase;Note=Phenylalanine ammonia-lyase%2C Resistance to brown planthopper (BPH);Transcript_evidence=Inferred from literature;ORF_evidence=Q53NW6;GO=Biological Process: L-phenylalanine catabolic process (GO:0006559),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ammonia-lyase activity (GO:0016841),Cellular Component: cytoplasm (GO:0005737);InterPro=Fumarase/histidase%2C N-terminal (IPR024083),L-Aspartase-like (IPR008948),Phenylalanine ammonia-lyase%2C shielding domain superfamily (IPR023144),Aromatic amino acid lyase (IPR001106),Phenylalanine ammonia-lyase (IPR005922),Phenylalanine/histidine ammonia-lyases%2C active site (IPR022313);Manual Curation=December 20%2C 2019;Literature_PMID=31848246;Oryzabase=16695;TENOR=Os11t0708900-00
Chr11	irgsp1_rep	CDS	29012490	29012863	.	+	0	Parent=Os11t0708900-01
Chr11	irgsp1_rep	CDS	29013016	29014744	.	+	1	Parent=Os11t0708900-01
Chr11	irgsp1_rep	mRNA	29016746	29019854	.	-	.	ID=Os11t0709000-00;Name=Os11t0709000-00;Locus_id=Os11g0709000;Note=Similar to H0124E07.4 protein.;Transcript_evidence=AK241872 (DDBJ%2C Secondary hit);ORF_evidence=NP_001175717.1 (RefSeq);TENOR=Os11t0709000-00;KEGG=Os11t0709000-00
Chr11	irgsp1_rep	five_prime_UTR	29019086	29019854	.	-	.	Parent=Os11t0709000-00
Chr11	irgsp1_rep	five_prime_UTR	29018298	29018365	.	-	.	Parent=Os11t0709000-00
Chr11	irgsp1_rep	five_prime_UTR	29016996	29017012	.	-	.	Parent=Os11t0709000-00
Chr11	irgsp1_rep	CDS	29016813	29016995	.	-	0	Parent=Os11t0709000-00
Chr11	irgsp1_rep	three_prime_UTR	29016746	29016812	.	-	.	Parent=Os11t0709000-00
Chr12	irgsp1_rep	mRNA	2682	5419	.	+	.	ID=Os12t0100100-01;Name=Os12t0100100-01;Locus_id=Os12g0100100;RAP-DB Gene Symbol Synonym(s)=OsRBD1;RAP-DB Gene Name Synonym(s)=RNA binding domain 1-containing protein;Oryzabase Gene Symbol Synonym(s)=OsRBD1%2C RBD1;Oryzabase Gene Name Synonym(s)=RNA Binding Domain-Containing Protein 1%2C RNA binding domain 1-containing protein;Note=RNA binding domain (RBD) containing protein%2C Abiotic stress tolerance;Transcript_evidence=AK241396;ORF_evidence=Q2QZ01;GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Nucleotide-binding alpha-beta plait domain superfamily (IPR012677),RNA-binding domain superfamily (IPR035979),RNA recognition motif domain (IPR000504),Chromatin target of PRMT1 protein%2C C-terminal (IPR025715);NIAS_FLcDNA=J065158B05;Manual Curation=August 30%2C 2018;Literature_PMID=26870074;Oryzabase=20945;TENOR=Os12t0100100-01;KEGG=Os12t0100100-01;Subcellular location=nucleus (GO:0005634)
Chr12	irgsp1_rep	five_prime_UTR	2682	2776	.	+	.	Parent=Os12t0100100-01
Chr12	irgsp1_rep	CDS	2777	2935	.	+	0	Parent=Os12t0100100-01
Chr12	irgsp1_rep	CDS	3002	3109	.	+	0	Parent=Os12t0100100-01
Chr12	irgsp1_rep	CDS	3492	3560	.	+	0	Parent=Os12t0100100-01
Chr12	irgsp1_rep	CDS	3652	3836	.	+	0	Parent=Os12t0100100-01
Chr12	irgsp1_rep	CDS	4923	5088	.	+	1	Parent=Os12t0100100-01
Chr12	irgsp1_rep	three_prime_UTR	5089	5419	.	+	.	Parent=Os12t0100100-01
Chr12	irgsp1_rep	mRNA	2727	5428	.	+	.	ID=Os12t0100100-02;Name=Os12t0100100-02;Locus_id=Os12g0100100;Oryzabase Gene Symbol Synonym(s)=OsRBD1%2C RBD1;Oryzabase Gene Name Synonym(s)=RNA Binding Domain-Containing Protein 1%2C RNA binding domain 1-containing protein;Note=Similar to ALY protein.;Transcript_evidence=AK068452 (DDBJ%2C Best hit);ORF_evidence=Q68VB5 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013153E18;Oryzabase=20945;Expression=AK068452;TENOR=Os12t0100100-02;KEGG=Os12t0100100-02
Chr12	irgsp1_rep	five_prime_UTR	2727	3001	.	+	.	Parent=Os12t0100100-02
Chr12	irgsp1_rep	CDS	3002	3109	.	+	0	Parent=Os12t0100100-02
Chr12	irgsp1_rep	CDS	3492	3560	.	+	0	Parent=Os12t0100100-02
Chr12	irgsp1_rep	CDS	3652	3836	.	+	0	Parent=Os12t0100100-02
Chr12	irgsp1_rep	CDS	4923	5088	.	+	1	Parent=Os12t0100100-02
Chr12	irgsp1_rep	three_prime_UTR	5089	5428	.	+	.	Parent=Os12t0100100-02
Chr12	irgsp1_rep	mRNA	2760	5428	.	+	.	ID=Os12t0100100-03;Name=Os12t0100100-03;Locus_id=Os12g0100100;Oryzabase Gene Symbol Synonym(s)=OsRBD1%2C RBD1;Oryzabase Gene Name Synonym(s)=RNA Binding Domain-Containing Protein 1%2C RNA binding domain 1-containing protein;Note=Similar to ALY protein.;Transcript_evidence=AK061492 (DDBJ%2C Best hit);ORF_evidence=Q68VB5 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=006-309-B07;Oryzabase=20945;Expression=AK061492;TENOR=Os12t0100100-03;KEGG=Os12t0100100-03
Chr12	irgsp1_rep	five_prime_UTR	2760	2776	.	+	.	Parent=Os12t0100100-03
Chr12	irgsp1_rep	CDS	2777	2935	.	+	0	Parent=Os12t0100100-03
Chr12	irgsp1_rep	CDS	3002	3109	.	+	0	Parent=Os12t0100100-03
Chr12	irgsp1_rep	CDS	3492	3560	.	+	0	Parent=Os12t0100100-03
Chr12	irgsp1_rep	CDS	3652	3836	.	+	0	Parent=Os12t0100100-03
Chr12	irgsp1_rep	CDS	4923	5088	.	+	1	Parent=Os12t0100100-03
Chr12	irgsp1_rep	three_prime_UTR	5089	5428	.	+	.	Parent=Os12t0100100-03
Chr12	irgsp1_rep	mRNA	5419	8440	.	-	.	ID=Os12t0100200-00;Name=Os12t0100200-00;Locus_id=Os12g0100200;Note=Conserved hypothetical protein.;Transcript_evidence=AK369990 (DDBJ);ORF_evidence=NP_001176293.1 (RefSeq);TENOR=Os12t0100200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	7571	8440	.	-	0	Parent=Os12t0100200-00
Chr12	irgsp1_rep	CDS	5477	7144	.	-	0	Parent=Os12t0100200-00
Chr12	irgsp1_rep	three_prime_UTR	5419	5476	.	-	.	Parent=Os12t0100200-00
Chr12	irgsp1_rep	mRNA	12686	14181	.	-	.	ID=Os12t0100500-01;Name=Os12t0100500-01;Locus_id=Os12g0100500;Note=Alpha/beta hydrolase family protein.;Transcript_evidence=AK060331 (DDBJ%2C Best hit);ORF_evidence=B4FK75 (UniProt);InterPro=Alpha/beta hydrolase fold-1 (IPR000073),Alpha/beta hydrolase%2C N-terminal (IPR022742);NIAS_FLcDNA=001-008-B05;Expression=AK060331;TENOR=Os12t0100500-01;KEGG=Os12t0100500-01
Chr12	irgsp1_rep	five_prime_UTR	14100	14181	.	-	.	Parent=Os12t0100500-01
Chr12	irgsp1_rep	CDS	13659	14099	.	-	0	Parent=Os12t0100500-01
Chr12	irgsp1_rep	CDS	12806	13363	.	-	0	Parent=Os12t0100500-01
Chr12	irgsp1_rep	three_prime_UTR	12686	12805	.	-	.	Parent=Os12t0100500-01
Chr12	irgsp1_rep	mRNA	25429	27035	.	-	.	ID=Os12t0100700-00;Name=Os12t0100700-00;Locus_id=Os12g0100700;CGSNL Gene Symbol=EXO70H3A;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H3A;Oryzabase Gene Symbol Synonym(s)=OsEXO70H3a%2C EXO70H3a%2C OrysaH3a_Exo70;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein H3a;Note=Similar to Exo70 exocyst complex subunit family protein.;Transcript_evidence=AK287644 (DDBJ%2C Secondary hit);ORF_evidence=Q2RBS0 (UniProt);GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exo70 exocyst complex subunit (IPR004140),Cullin repeat-like-containing domain (IPR016159);Oryzabase=20340;TENOR=Os12t0100700-00;KEGG=Os12t0100700-00
Chr12	irgsp1_rep	five_prime_UTR	27032	27035	.	-	.	Parent=Os12t0100700-00
Chr12	irgsp1_rep	CDS	25538	27031	.	-	0	Parent=Os12t0100700-00
Chr12	irgsp1_rep	three_prime_UTR	25429	25537	.	-	.	Parent=Os12t0100700-00
Chr12	irgsp1_rep	mRNA	37034	43021	.	+	.	ID=Os12t0101000-01;Name=Os12t0101000-01;Locus_id=Os12g0101000;Oryzabase Gene Symbol Synonym(s)=OsCCT39%2C OsCMF13;Oryzabase Gene Name Synonym(s)=CCT domain-containing gene 39%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 39%2C CCT domain protein 39%2C CCT MOTIF FAMILY (CMF) gene 13;Note=Similar to RNase P subunit p30 family protein%2C expressed.;Transcript_evidence=AK064386 (DDBJ%2C Best hit);ORF_evidence=Q2RBR7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=CCT domain (IPR010402);NIAS_FLcDNA=002-108-E09;Oryzabase=19178;TENOR=Os12t0101000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	37034	38192	.	+	0	Parent=Os12t0101000-01
Chr12	irgsp1_rep	CDS	38532	38626	.	+	2	Parent=Os12t0101000-01
Chr12	irgsp1_rep	CDS	42351	42494	.	+	0	Parent=Os12t0101000-01
Chr12	irgsp1_rep	CDS	42587	42868	.	+	0	Parent=Os12t0101000-01
Chr12	irgsp1_rep	three_prime_UTR	42869	43021	.	+	.	Parent=Os12t0101000-01
Chr12	irgsp1_rep	mRNA	37403	38820	.	+	.	ID=Os12t0101000-02;Name=Os12t0101000-02;Locus_id=Os12g0101000;Oryzabase Gene Symbol Synonym(s)=OsCCT39%2C OsCMF13;Oryzabase Gene Name Synonym(s)=CCT domain-containing gene 39%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 39%2C CCT domain protein 39%2C CCT MOTIF FAMILY (CMF) gene 13;Note=Similar to RNase P subunit p30 family protein%2C expressed.;Transcript_evidence=AK058862 (DDBJ%2C Best hit);ORF_evidence=Q2RBR8 (UniProt);NIAS_FLcDNA=001-005-G05;Oryzabase=19178;TENOR=Os12t0101000-02
Chr12	irgsp1_rep	CDS	37403	38192	.	+	0	Parent=Os12t0101000-02
Chr12	irgsp1_rep	CDS	38532	38626	.	+	2	Parent=Os12t0101000-02
Chr12	irgsp1_rep	CDS	38723	38820	.	+	0	Parent=Os12t0101000-02
Chr12	irgsp1_rep	mRNA	39628	42963	.	+	.	ID=Os12t0101000-03;Name=Os12t0101000-03;Locus_id=Os12g0101000;Oryzabase Gene Symbol Synonym(s)=OsCCT39%2C OsCMF13;Oryzabase Gene Name Synonym(s)=CCT domain-containing gene 39%2C CCT (CO%2C CO-LIKE and TOC1) domain protein 39%2C CCT domain protein 39%2C CCT MOTIF FAMILY (CMF) gene 13;Note=Similar to CCT motif family protein.;Transcript_evidence=AK100957 (DDBJ%2C Best hit);ORF_evidence=Q2QYZ4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=CCT domain (IPR010402);NIAS_FLcDNA=J023140H04;Oryzabase=19178;Expression=AK100957;TENOR=Os12t0101000-03;KEGG=Os12t0101000-03
Chr12	irgsp1_rep	five_prime_UTR	39628	42335	.	+	.	Parent=Os12t0101000-03
Chr12	irgsp1_rep	CDS	42336	42494	.	+	0	Parent=Os12t0101000-03
Chr12	irgsp1_rep	CDS	42587	42868	.	+	0	Parent=Os12t0101000-03
Chr12	irgsp1_rep	three_prime_UTR	42869	42963	.	+	.	Parent=Os12t0101000-03
Chr12	irgsp1_rep	mRNA	64393	67038	.	+	.	ID=Os12t0101600-01;Name=Os12t0101600-01;Locus_id=Os12g0101600;RAP-DB Gene Symbol Synonym(s)=NAL3%2C nal3(nal2)%2C nal2%2C nal3%2C cul3%2C OsWOX3A%2C WOX3%2C OsWOX3%2C OsNS%2C OsNS1/OsNS2%2C OsPRS;RAP-DB Gene Name Synonym(s)=NARROW LEAF 3%2C narrow leaf3%2C narrow leaf 3%2C narrow leaf-3%2C curl leaf-3%2C WUSCHEL related homeobox 3A%2C WUSCHEL-related homeobox 3%2C WUSCHEL-related homeobox 3A;CGSNL Gene Symbol=NAL3;CGSNL Gene Name=NARROW LEAF 3;Oryzabase Gene Symbol Synonym(s)=nal3(nal2)%2C nal2%2C nal3%2C cul3%2C OsWOX3A%2C WOX3%2C OsWOX3%2C OsNS%2C OsNS1/OsNS2%2C OsPRS;Oryzabase Gene Name Synonym(s)=narrow leaf3%2C narrow leaf 3%2C narrow leaf-3%2C curl leaf-3%2C WUSCHEL related homeobox 3A%2C WUSCHEL-related homeobox 3%2C WUSCHEL-related homeobox 3A;Note=WUS-type homenodomain protein%2C Leaf development;Transcript_evidence=AM490243 (Genbank);ORF_evidence=A8Y7W4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeodomain (IPR001356),Homeodomain-like (IPR009057);Manual Curation=August 2%2C 2009;Literature_PMID=17768306;Oryzabase=963;TENOR=Os12t0101600-00
Chr12	irgsp1_rep	CDS	64393	64973	.	+	0	Parent=Os12t0101600-01
Chr12	irgsp1_rep	CDS	66915	67038	.	+	1	Parent=Os12t0101600-01
Chr12	irgsp1_rep	mRNA	64393	65004	.	+	.	ID=Os12t0101600-02;Name=Os12t0101600-02;Locus_id=Os12g0101600;RAP-DB Gene Symbol Synonym(s)=WOX3%2C OsWOX3%2C OsNS%2C OsPRS;RAP-DB Gene Name Synonym(s)=WUSCHEL-LIKE HOMEOBOX 3%2C Rice Wuschel (WUS)-like homeobox 3;CGSNL Gene Symbol=NAL3;CGSNL Gene Name=NARROW LEAF 3;Oryzabase Gene Symbol Synonym(s)=nal3(nal2)%2C nal2%2C nal3%2C cul3%2C OsWOX3A%2C WOX3%2C OsWOX3%2C OsNS%2C OsNS1/OsNS2%2C OsPRS;Oryzabase Gene Name Synonym(s)=narrow leaf3%2C narrow leaf 3%2C narrow leaf-3%2C curl leaf-3%2C WUSCHEL related homeobox 3A%2C WUSCHEL-related homeobox 3%2C WUSCHEL-related homeobox 3A;Note=WUS-type homenodomain protein%2C Leaf development;Transcript_evidence=AB218893 (Genbank);ORF_evidence=Q33DK1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeodomain (IPR001356),Homeodomain-like (IPR009057);Manual Curation=August 2%2C 2009;Literature_PMID=16284419,17351053;Oryzabase=963
Chr12	irgsp1_rep	CDS	64393	65004	.	+	0	Parent=Os12t0101600-02
Chr12	irgsp1_rep	mRNA	75290	89955	.	+	.	ID=Os12t0101800-01;Name=Os12t0101800-01;Locus_id=Os12g0101800;CGSNL Gene Symbol=NPH1A;CGSNL Gene Name=NONPHOTOTROPHIC HYPOCOTYL 1A;Oryzabase Gene Symbol Synonym(s)=OsNPH1a;Oryzabase Gene Name Synonym(s)=nonphototrophic hypocotyl 1a;Note=Similar to Nonphototrophic hypocotyl 1a.;Transcript_evidence=AK065596 (DDBJ%2C Best hit);ORF_evidence=Q2QYY8 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: signal transduction (GO:0007165),Molecular Function: two-component sensor activity (GO:0000155),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: protein binding (GO:0005515);InterPro=PAS (IPR000014),PAS-associated%2C C-terminal (IPR000700),PAC motif (IPR001610),PAS fold-3 (IPR013655),PAS fold (IPR013767);NIAS_FLcDNA=J013026O13;Oryzabase=23608;Expression=AK065596;TENOR=Os12t0101800-01;KEGG=Os12t0101800-01
Chr12	irgsp1_rep	five_prime_UTR	75290	75516	.	+	.	Parent=Os12t0101800-01
Chr12	irgsp1_rep	CDS	75517	75529	.	+	0	Parent=Os12t0101800-01
Chr12	irgsp1_rep	CDS	81420	81924	.	+	2	Parent=Os12t0101800-01
Chr12	irgsp1_rep	CDS	81999	82181	.	+	1	Parent=Os12t0101800-01
Chr12	irgsp1_rep	CDS	82282	82373	.	+	1	Parent=Os12t0101800-01
Chr12	irgsp1_rep	CDS	82491	82764	.	+	2	Parent=Os12t0101800-01
Chr12	irgsp1_rep	CDS	82840	83053	.	+	1	Parent=Os12t0101800-01
Chr12	irgsp1_rep	CDS	83158	83228	.	+	0	Parent=Os12t0101800-01
Chr12	irgsp1_rep	CDS	83403	83509	.	+	1	Parent=Os12t0101800-01
Chr12	irgsp1_rep	CDS	83967	84016	.	+	2	Parent=Os12t0101800-01
Chr12	irgsp1_rep	CDS	84125	84208	.	+	0	Parent=Os12t0101800-01
Chr12	irgsp1_rep	CDS	85060	85119	.	+	0	Parent=Os12t0101800-01
Chr12	irgsp1_rep	CDS	85196	85285	.	+	0	Parent=Os12t0101800-01
Chr12	irgsp1_rep	CDS	85824	85904	.	+	0	Parent=Os12t0101800-01
Chr12	irgsp1_rep	three_prime_UTR	85905	86106	.	+	.	Parent=Os12t0101800-01
Chr12	irgsp1_rep	three_prime_UTR	86224	86304	.	+	.	Parent=Os12t0101800-01
Chr12	irgsp1_rep	three_prime_UTR	86492	86595	.	+	.	Parent=Os12t0101800-01
Chr12	irgsp1_rep	three_prime_UTR	86793	86842	.	+	.	Parent=Os12t0101800-01
Chr12	irgsp1_rep	three_prime_UTR	87625	87731	.	+	.	Parent=Os12t0101800-01
Chr12	irgsp1_rep	three_prime_UTR	88603	88725	.	+	.	Parent=Os12t0101800-01
Chr12	irgsp1_rep	three_prime_UTR	88838	88889	.	+	.	Parent=Os12t0101800-01
Chr12	irgsp1_rep	three_prime_UTR	89090	89202	.	+	.	Parent=Os12t0101800-01
Chr12	irgsp1_rep	three_prime_UTR	89265	89405	.	+	.	Parent=Os12t0101800-01
Chr12	irgsp1_rep	three_prime_UTR	89513	89955	.	+	.	Parent=Os12t0101800-01
Chr12	irgsp1_rep	mRNA	82408	89955	.	+	.	ID=Os12t0101800-02;Name=Os12t0101800-02;Locus_id=Os12g0101800;CGSNL Gene Symbol=NPH1A;CGSNL Gene Name=NONPHOTOTROPHIC HYPOCOTYL 1A;Oryzabase Gene Symbol Synonym(s)=OsNPH1a;Oryzabase Gene Name Synonym(s)=nonphototrophic hypocotyl 1a;Note=Similar to Nonphototrophic hypocotyl 1a.;Transcript_evidence=AK066816 (DDBJ%2C Best hit);ORF_evidence=Q2QYY8 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: two-component sensor activity (GO:0000155),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=PAS (IPR000014),PAS-associated%2C C-terminal (IPR000700),Protein kinase%2C catalytic domain (IPR000719),PAC motif (IPR001610),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),PAS fold (IPR013767),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013081N02;Manual Curation=April 24%2C 2020;Oryzabase=23608;Expression=AK066816;TENOR=Os12t0101800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	82408	82612	.	+	.	Parent=Os12t0101800-02
Chr12	irgsp1_rep	CDS	82613	82764	.	+	0	Parent=Os12t0101800-02
Chr12	irgsp1_rep	CDS	82840	83053	.	+	1	Parent=Os12t0101800-02
Chr12	irgsp1_rep	CDS	83158	83228	.	+	0	Parent=Os12t0101800-02
Chr12	irgsp1_rep	CDS	83403	83509	.	+	1	Parent=Os12t0101800-02
Chr12	irgsp1_rep	CDS	83967	84016	.	+	2	Parent=Os12t0101800-02
Chr12	irgsp1_rep	CDS	84125	84208	.	+	0	Parent=Os12t0101800-02
Chr12	irgsp1_rep	CDS	85060	85119	.	+	0	Parent=Os12t0101800-02
Chr12	irgsp1_rep	CDS	85196	85285	.	+	0	Parent=Os12t0101800-02
Chr12	irgsp1_rep	CDS	85824	85900	.	+	0	Parent=Os12t0101800-02
Chr12	irgsp1_rep	CDS	86022	86106	.	+	1	Parent=Os12t0101800-02
Chr12	irgsp1_rep	CDS	86224	86304	.	+	0	Parent=Os12t0101800-02
Chr12	irgsp1_rep	CDS	86492	86595	.	+	0	Parent=Os12t0101800-02
Chr12	irgsp1_rep	CDS	86793	86842	.	+	1	Parent=Os12t0101800-02
Chr12	irgsp1_rep	CDS	87625	87731	.	+	2	Parent=Os12t0101800-02
Chr12	irgsp1_rep	CDS	88603	88725	.	+	0	Parent=Os12t0101800-02
Chr12	irgsp1_rep	CDS	88838	88889	.	+	0	Parent=Os12t0101800-02
Chr12	irgsp1_rep	CDS	89090	89202	.	+	2	Parent=Os12t0101800-02
Chr12	irgsp1_rep	CDS	89265	89405	.	+	0	Parent=Os12t0101800-02
Chr12	irgsp1_rep	CDS	89513	89602	.	+	0	Parent=Os12t0101800-02
Chr12	irgsp1_rep	three_prime_UTR	89603	89955	.	+	.	Parent=Os12t0101800-02
Chr12	irgsp1_rep	mRNA	75285	89961	.	+	.	ID=Os12t0101800-03;Name=Os12t0101800-03;Locus_id=Os12g0101800;RAP-DB Gene Symbol Synonym(s)=OsNPH1a;RAP-DB Gene Name Synonym(s)=nonphototrophic hypocotyl 1a;CGSNL Gene Symbol=NPH1A;CGSNL Gene Name=NONPHOTOTROPHIC HYPOCOTYL 1A;Oryzabase Gene Symbol Synonym(s)=OsNPH1a;Oryzabase Gene Name Synonym(s)=nonphototrophic hypocotyl 1a;Note=Rice nonphototropic hypocotyl 1 (NPH1) homologue%2C Phototropin;Transcript_evidence=AB018444 (Norin 8);ORF_evidence=Q2QYY8;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=PAS domain superfamily (IPR035965),Protein kinase-like domain superfamily (IPR011009),PAS domain (IPR000014),PAS-associated%2C C-terminal (IPR000700),Protein kinase domain (IPR000719),PAC motif (IPR001610),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);Manual Curation=April 24%2C 2020;Literature_PMID=12068117,10845454;Oryzabase=23608
Chr12	irgsp1_rep	five_prime_UTR	75285	75516	.	+	.	Parent=Os12t0101800-03
Chr12	irgsp1_rep	CDS	75517	75529	.	+	0	Parent=Os12t0101800-03
Chr12	irgsp1_rep	CDS	81420	81924	.	+	2	Parent=Os12t0101800-03
Chr12	irgsp1_rep	CDS	81999	82181	.	+	1	Parent=Os12t0101800-03
Chr12	irgsp1_rep	CDS	82282	82373	.	+	1	Parent=Os12t0101800-03
Chr12	irgsp1_rep	CDS	82491	82764	.	+	2	Parent=Os12t0101800-03
Chr12	irgsp1_rep	CDS	82840	83053	.	+	1	Parent=Os12t0101800-03
Chr12	irgsp1_rep	CDS	83158	83228	.	+	0	Parent=Os12t0101800-03
Chr12	irgsp1_rep	CDS	83403	83509	.	+	1	Parent=Os12t0101800-03
Chr12	irgsp1_rep	CDS	83967	84016	.	+	2	Parent=Os12t0101800-03
Chr12	irgsp1_rep	CDS	84125	84208	.	+	0	Parent=Os12t0101800-03
Chr12	irgsp1_rep	CDS	85060	85119	.	+	0	Parent=Os12t0101800-03
Chr12	irgsp1_rep	CDS	85196	85285	.	+	0	Parent=Os12t0101800-03
Chr12	irgsp1_rep	CDS	85824	85900	.	+	0	Parent=Os12t0101800-03
Chr12	irgsp1_rep	CDS	86022	86106	.	+	1	Parent=Os12t0101800-03
Chr12	irgsp1_rep	CDS	86224	86304	.	+	0	Parent=Os12t0101800-03
Chr12	irgsp1_rep	CDS	86492	86595	.	+	0	Parent=Os12t0101800-03
Chr12	irgsp1_rep	CDS	86793	86842	.	+	1	Parent=Os12t0101800-03
Chr12	irgsp1_rep	CDS	87625	87731	.	+	2	Parent=Os12t0101800-03
Chr12	irgsp1_rep	CDS	88603	88725	.	+	0	Parent=Os12t0101800-03
Chr12	irgsp1_rep	CDS	88838	88889	.	+	0	Parent=Os12t0101800-03
Chr12	irgsp1_rep	CDS	89090	89202	.	+	2	Parent=Os12t0101800-03
Chr12	irgsp1_rep	CDS	89265	89405	.	+	0	Parent=Os12t0101800-03
Chr12	irgsp1_rep	CDS	89513	89602	.	+	0	Parent=Os12t0101800-03
Chr12	irgsp1_rep	three_prime_UTR	89603	89961	.	+	.	Parent=Os12t0101800-03
Chr12	irgsp1_rep	mRNA	81517	81926	.	-	.	ID=Os12t0101901-00;Name=Os12t0101901-00;Locus_id=Os12g0101901;Note=Hypothetical gene.;Transcript_evidence=EU949907 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0101901-00;KEGG=Os12t0101901-00
Chr12	irgsp1_rep	five_prime_UTR	81886	81926	.	-	.	Parent=Os12t0101901-00
Chr12	irgsp1_rep	CDS	81517	81885	.	-	0	Parent=Os12t0101901-00
Chr12	irgsp1_rep	mRNA	93043	95765	.	+	.	ID=Os12t0102100-01;Name=Os12t0102100-01;Locus_id=Os12g0102100;Oryzabase Gene Name Synonym(s)=Trans-2-enoyl-CoA reductase;Note=Alcohol dehydrogenase superfamily%2C zinc-containing protein.;Transcript_evidence=AK068187 (DDBJ%2C Best hit);ORF_evidence=C5MRG3 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),GroES-like (IPR011032),Alcohol dehydrogenase GroES-like (IPR013154);NIAS_FLcDNA=J013134H02;Oryzabase=20153;Expression=AK068187;TENOR=Os12t0102100-01;KEGG=Os12t0102100-01 (EC:1.3.1.38)
Chr12	irgsp1_rep	five_prime_UTR	93043	93090	.	+	.	Parent=Os12t0102100-01
Chr12	irgsp1_rep	CDS	93091	93666	.	+	0	Parent=Os12t0102100-01
Chr12	irgsp1_rep	three_prime_UTR	93667	93803	.	+	.	Parent=Os12t0102100-01
Chr12	irgsp1_rep	three_prime_UTR	93899	93998	.	+	.	Parent=Os12t0102100-01
Chr12	irgsp1_rep	three_prime_UTR	94453	94529	.	+	.	Parent=Os12t0102100-01
Chr12	irgsp1_rep	three_prime_UTR	94608	94686	.	+	.	Parent=Os12t0102100-01
Chr12	irgsp1_rep	three_prime_UTR	95108	95226	.	+	.	Parent=Os12t0102100-01
Chr12	irgsp1_rep	three_prime_UTR	95330	95765	.	+	.	Parent=Os12t0102100-01
Chr12	irgsp1_rep	mRNA	95330	95747	.	+	.	ID=Os12t0102100-02;Name=Os12t0102100-02;Locus_id=Os12g0102100;Oryzabase Gene Name Synonym(s)=Trans-2-enoyl-CoA reductase;Note=Similar to predicted protein.;Transcript_evidence=AK059330 (DDBJ%2C Best hit);ORF_evidence=C5MRG3 (UniProt);NIAS_FLcDNA=001-026-A06;Oryzabase=20153;Expression=AK059330;TENOR=Os12t0102100-02;KEGG=Os12t0102100-02 (EC:1.3.1.38)
Chr12	irgsp1_rep	five_prime_UTR	95330	95330	.	+	.	Parent=Os12t0102100-02
Chr12	irgsp1_rep	CDS	95331	95423	.	+	0	Parent=Os12t0102100-02
Chr12	irgsp1_rep	three_prime_UTR	95424	95747	.	+	.	Parent=Os12t0102100-02
Chr12	irgsp1_rep	mRNA	96736	99805	.	+	.	ID=Os12t0102200-01;Name=Os12t0102200-01;Locus_id=Os12g0102200;Note=LisH dimerisation motif domain containing protein.;Transcript_evidence=AK103950 (DDBJ%2C Best hit);ORF_evidence=Q9FQ22 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=LisH dimerisation motif (IPR006594);NIAS_FLcDNA=001-014-D01;Expression=AK103950;TENOR=Os12t0102200-01;KEGG=Os12t0102200-01
Chr12	irgsp1_rep	five_prime_UTR	96736	96822	.	+	.	Parent=Os12t0102200-01
Chr12	irgsp1_rep	CDS	96823	96909	.	+	0	Parent=Os12t0102200-01
Chr12	irgsp1_rep	CDS	97449	97581	.	+	0	Parent=Os12t0102200-01
Chr12	irgsp1_rep	CDS	97899	97987	.	+	2	Parent=Os12t0102200-01
Chr12	irgsp1_rep	CDS	98088	98210	.	+	0	Parent=Os12t0102200-01
Chr12	irgsp1_rep	CDS	98980	99119	.	+	0	Parent=Os12t0102200-01
Chr12	irgsp1_rep	CDS	99207	99232	.	+	1	Parent=Os12t0102200-01
Chr12	irgsp1_rep	CDS	99310	99466	.	+	2	Parent=Os12t0102200-01
Chr12	irgsp1_rep	CDS	99548	99572	.	+	1	Parent=Os12t0102200-01
Chr12	irgsp1_rep	three_prime_UTR	99573	99805	.	+	.	Parent=Os12t0102200-01
Chr12	irgsp1_rep	mRNA	99964	102394	.	-	.	ID=Os12t0102300-01;Name=Os12t0102300-01;Locus_id=Os12g0102300;CGSNL Gene Symbol=WRKY57;CGSNL Gene Name=WRKY GENE 57;Oryzabase Gene Symbol Synonym(s)=OsWRKY57;Oryzabase Gene Name Synonym(s)=Rice WRKY gene57;Note=Similar to WRKY transcription factor 57.;Transcript_evidence=AK242855 (DDBJ%2C Best hit);ORF_evidence=Q6IEM4 (UniProt);NIAS_FLcDNA=J090073J20;Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6571;TENOR=Os12t0102300-01;KEGG=Os12t0102300-01
Chr12	irgsp1_rep	five_prime_UTR	102008	102394	.	-	.	Parent=Os12t0102300-01
Chr12	irgsp1_rep	CDS	101654	102007	.	-	0	Parent=Os12t0102300-01
Chr12	irgsp1_rep	three_prime_UTR	101085	101653	.	-	.	Parent=Os12t0102300-01
Chr12	irgsp1_rep	three_prime_UTR	99964	100299	.	-	.	Parent=Os12t0102300-01
Chr12	irgsp1_rep	mRNA	103029	103978	.	-	.	ID=Os12t0102350-01;Name=Os12t0102350-01;Locus_id=Os12g0102350;Note=Similar to WRKY transcription factor 57.;Transcript_evidence=AK061799 (DDBJ%2C Best hit);ORF_evidence=Q6IEM4 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase C48%2C SUMO/Sentrin/Ubl1 (IPR003653);NIAS_FLcDNA=001-039-H08;Expression=AK061799;TENOR=Os12t0102350-01;KEGG=Os12t0102350-01 (EC:3.4.22.-)
Chr12	irgsp1_rep	five_prime_UTR	103957	103978	.	-	.	Parent=Os12t0102350-01
Chr12	irgsp1_rep	CDS	103237	103956	.	-	0	Parent=Os12t0102350-01
Chr12	irgsp1_rep	three_prime_UTR	103029	103236	.	-	.	Parent=Os12t0102350-01
Chr12	irgsp1_rep	mRNA	105922	112629	.	+	.	ID=Os12t0102400-01;Name=Os12t0102400-01;Locus_id=Os12g0102400;RAP-DB Gene Symbol Synonym(s)=OsRINGC2-2;RAP-DB Gene Name Synonym(s)=Oryza sativa RING finger protein C2 type-2;Oryzabase Gene Symbol Synonym(s)=OsRINGC2-2;Oryzabase Gene Name Synonym(s)=RING-C2 type protein 2;Note=RING-C2 type protein%2C E3 ligase;Transcript_evidence=AK103750;ORF_evidence=Q2QYY3;GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083),RNA-binding domain superfamily (IPR035979),Nucleotide-binding alpha-beta plait domain superfamily (IPR012677),Zinc finger%2C RING-type (IPR001841),RNA recognition motif domain (IPR000504),CNOT4%2C RNA recognition motif (IPR034261),RNA recognition motif domain%2C eukaryote (IPR003954);NIAS_FLcDNA=J033142N16;Manual Curation=September 6%2C 2018;Literature_PMID=22705026;Oryzabase=11526;Expression=AK103750;TENOR=Os12t0102400-01;KEGG=Os12t0102400-01 (EC:2.3.2.27);Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737)
Chr12	irgsp1_rep	five_prime_UTR	105922	106118	.	+	.	Parent=Os12t0102400-01
Chr12	irgsp1_rep	CDS	106119	106120	.	+	0	Parent=Os12t0102400-01
Chr12	irgsp1_rep	CDS	106421	106520	.	+	1	Parent=Os12t0102400-01
Chr12	irgsp1_rep	CDS	106598	106725	.	+	0	Parent=Os12t0102400-01
Chr12	irgsp1_rep	CDS	106939	107101	.	+	1	Parent=Os12t0102400-01
Chr12	irgsp1_rep	CDS	107198	107310	.	+	0	Parent=Os12t0102400-01
Chr12	irgsp1_rep	CDS	108026	108109	.	+	1	Parent=Os12t0102400-01
Chr12	irgsp1_rep	CDS	108193	108241	.	+	1	Parent=Os12t0102400-01
Chr12	irgsp1_rep	CDS	108331	108422	.	+	0	Parent=Os12t0102400-01
Chr12	irgsp1_rep	CDS	108680	108809	.	+	1	Parent=Os12t0102400-01
Chr12	irgsp1_rep	CDS	108906	108982	.	+	0	Parent=Os12t0102400-01
Chr12	irgsp1_rep	CDS	109058	110676	.	+	1	Parent=Os12t0102400-01
Chr12	irgsp1_rep	CDS	111024	111221	.	+	2	Parent=Os12t0102400-01
Chr12	irgsp1_rep	CDS	111287	111825	.	+	2	Parent=Os12t0102400-01
Chr12	irgsp1_rep	three_prime_UTR	111826	112022	.	+	.	Parent=Os12t0102400-01
Chr12	irgsp1_rep	three_prime_UTR	112239	112629	.	+	.	Parent=Os12t0102400-01
Chr12	irgsp1_rep	mRNA	112744	120226	.	-	.	ID=Os12t0102500-01;Name=Os12t0102500-01;Locus_id=Os12g0102500;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK101189 (DDBJ%2C Best hit);ORF_evidence=NP_001031499.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Malectin-like carbohydrate-binding domain (IPR024788);NIAS_FLcDNA=J033030E21;Expression=AK101189;TENOR=Os12t0102500-01;KEGG=Os12t0102500-01
Chr12	irgsp1_rep	five_prime_UTR	120070	120226	.	-	.	Parent=Os12t0102500-01
Chr12	irgsp1_rep	five_prime_UTR	119820	119914	.	-	.	Parent=Os12t0102500-01
Chr12	irgsp1_rep	CDS	119753	119819	.	-	0	Parent=Os12t0102500-01
Chr12	irgsp1_rep	CDS	119033	119567	.	-	2	Parent=Os12t0102500-01
Chr12	irgsp1_rep	CDS	118439	118944	.	-	1	Parent=Os12t0102500-01
Chr12	irgsp1_rep	CDS	118217	118349	.	-	2	Parent=Os12t0102500-01
Chr12	irgsp1_rep	CDS	118058	118129	.	-	1	Parent=Os12t0102500-01
Chr12	irgsp1_rep	CDS	117908	117976	.	-	1	Parent=Os12t0102500-01
Chr12	irgsp1_rep	CDS	117751	117822	.	-	1	Parent=Os12t0102500-01
Chr12	irgsp1_rep	CDS	117480	117548	.	-	1	Parent=Os12t0102500-01
Chr12	irgsp1_rep	CDS	117125	117279	.	-	1	Parent=Os12t0102500-01
Chr12	irgsp1_rep	CDS	116810	117051	.	-	2	Parent=Os12t0102500-01
Chr12	irgsp1_rep	CDS	114703	114829	.	-	0	Parent=Os12t0102500-01
Chr12	irgsp1_rep	CDS	114067	114135	.	-	2	Parent=Os12t0102500-01
Chr12	irgsp1_rep	CDS	113772	113955	.	-	2	Parent=Os12t0102500-01
Chr12	irgsp1_rep	CDS	113500	113635	.	-	1	Parent=Os12t0102500-01
Chr12	irgsp1_rep	CDS	113039	113368	.	-	0	Parent=Os12t0102500-01
Chr12	irgsp1_rep	three_prime_UTR	112744	113038	.	-	.	Parent=Os12t0102500-01
Chr12	irgsp1_rep	mRNA	112857	117507	.	-	.	ID=Os12t0102500-02;Name=Os12t0102500-02;Locus_id=Os12g0102500;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK120291 (DDBJ%2C Best hit);ORF_evidence=NP_001031499.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013050I12;Expression=AK120291;TENOR=Os12t0102500-02;KEGG=Os12t0102500-02
Chr12	irgsp1_rep	five_prime_UTR	117506	117507	.	-	.	Parent=Os12t0102500-02
Chr12	irgsp1_rep	CDS	117480	117505	.	-	0	Parent=Os12t0102500-02
Chr12	irgsp1_rep	CDS	117125	117279	.	-	1	Parent=Os12t0102500-02
Chr12	irgsp1_rep	CDS	116810	117051	.	-	2	Parent=Os12t0102500-02
Chr12	irgsp1_rep	CDS	114703	114829	.	-	0	Parent=Os12t0102500-02
Chr12	irgsp1_rep	CDS	114067	114135	.	-	2	Parent=Os12t0102500-02
Chr12	irgsp1_rep	CDS	113772	113955	.	-	2	Parent=Os12t0102500-02
Chr12	irgsp1_rep	CDS	113500	113635	.	-	1	Parent=Os12t0102500-02
Chr12	irgsp1_rep	CDS	113039	113368	.	-	0	Parent=Os12t0102500-02
Chr12	irgsp1_rep	three_prime_UTR	112857	113038	.	-	.	Parent=Os12t0102500-02
Chr12	irgsp1_rep	mRNA	125923	128272	.	+	.	ID=Os12t0102600-01;Name=Os12t0102600-01;Locus_id=Os12g0102600;Note=Similar to HCF152.;Transcript_evidence=AK072365 (DDBJ%2C Best hit);ORF_evidence=XP_002882632.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J023061I03;TENOR=Os12t0102600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	125923	126051	.	+	.	Parent=Os12t0102600-01
Chr12	irgsp1_rep	CDS	126052	128145	.	+	0	Parent=Os12t0102600-01
Chr12	irgsp1_rep	three_prime_UTR	128146	128272	.	+	.	Parent=Os12t0102600-01
Chr12	irgsp1_rep	mRNA	128352	133489	.	-	.	ID=Os12t0102700-01;Name=Os12t0102700-01;Locus_id=Os12g0102700;Note=Conserved hypothetical protein.;Transcript_evidence=AK119290 (DDBJ%2C Best hit);ORF_evidence=B9GBD6 (UniProt);NIAS_FLcDNA=001-130-D06;Expression=AK119290;TENOR=Os12t0102700-01;KEGG=Os12t0102700-01
Chr12	irgsp1_rep	five_prime_UTR	133256	133489	.	-	.	Parent=Os12t0102700-01
Chr12	irgsp1_rep	five_prime_UTR	132890	132962	.	-	.	Parent=Os12t0102700-01
Chr12	irgsp1_rep	CDS	132850	132889	.	-	0	Parent=Os12t0102700-01
Chr12	irgsp1_rep	CDS	132561	132728	.	-	2	Parent=Os12t0102700-01
Chr12	irgsp1_rep	CDS	132238	132494	.	-	2	Parent=Os12t0102700-01
Chr12	irgsp1_rep	CDS	132080	132148	.	-	0	Parent=Os12t0102700-01
Chr12	irgsp1_rep	CDS	131790	131934	.	-	0	Parent=Os12t0102700-01
Chr12	irgsp1_rep	CDS	131566	131669	.	-	2	Parent=Os12t0102700-01
Chr12	irgsp1_rep	CDS	131136	131309	.	-	0	Parent=Os12t0102700-01
Chr12	irgsp1_rep	CDS	129486	130705	.	-	0	Parent=Os12t0102700-01
Chr12	irgsp1_rep	CDS	129284	129395	.	-	1	Parent=Os12t0102700-01
Chr12	irgsp1_rep	CDS	128920	129000	.	-	0	Parent=Os12t0102700-01
Chr12	irgsp1_rep	CDS	128617	128691	.	-	0	Parent=Os12t0102700-01
Chr12	irgsp1_rep	three_prime_UTR	128352	128616	.	-	.	Parent=Os12t0102700-01
Chr12	irgsp1_rep	mRNA	128620	133483	.	+	.	ID=Os12t0102800-00;Name=Os12t0102800-00;Locus_id=Os12g0102800;Note=Hypothetical protein.;Transcript_evidence=tplb0025h13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0102800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	128620	128684	.	+	.	Parent=Os12t0102800-00
Chr12	irgsp1_rep	five_prime_UTR	128914	129334	.	+	.	Parent=Os12t0102800-00
Chr12	irgsp1_rep	five_prime_UTR	129480	130686	.	+	.	Parent=Os12t0102800-00
Chr12	irgsp1_rep	five_prime_UTR	131005	131305	.	+	.	Parent=Os12t0102800-00
Chr12	irgsp1_rep	five_prime_UTR	131565	131665	.	+	.	Parent=Os12t0102800-00
Chr12	irgsp1_rep	five_prime_UTR	131785	131933	.	+	.	Parent=Os12t0102800-00
Chr12	irgsp1_rep	five_prime_UTR	132076	132156	.	+	.	Parent=Os12t0102800-00
Chr12	irgsp1_rep	five_prime_UTR	132244	132478	.	+	.	Parent=Os12t0102800-00
Chr12	irgsp1_rep	five_prime_UTR	132541	132592	.	+	.	Parent=Os12t0102800-00
Chr12	irgsp1_rep	CDS	132593	132730	.	+	0	Parent=Os12t0102800-00
Chr12	irgsp1_rep	CDS	133330	133461	.	+	0	Parent=Os12t0102800-00
Chr12	irgsp1_rep	three_prime_UTR	133462	133483	.	+	.	Parent=Os12t0102800-00
Chr12	irgsp1_rep	mRNA	133647	136179	.	+	.	ID=Os12t0102900-00;Name=Os12t0102900-00;Locus_id=Os12g0102900;Note=Similar to IBR domain containing protein.;Transcript_evidence=CT835558 (DDBJ%2C Best hit);ORF_evidence=B4FA87 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Ribonuclease H-like (IPR012337),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907);TENOR=Os12t0102900-00;KEGG=Os12t0102900-00
Chr12	irgsp1_rep	five_prime_UTR	133647	133653	.	+	.	Parent=Os12t0102900-00
Chr12	irgsp1_rep	CDS	133654	134304	.	+	0	Parent=Os12t0102900-00
Chr12	irgsp1_rep	CDS	134726	135280	.	+	0	Parent=Os12t0102900-00
Chr12	irgsp1_rep	three_prime_UTR	135281	135508	.	+	.	Parent=Os12t0102900-00
Chr12	irgsp1_rep	three_prime_UTR	135673	136179	.	+	.	Parent=Os12t0102900-00
Chr12	irgsp1_rep	mRNA	136532	141056	.	-	.	ID=Os12t0103000-01;Name=Os12t0103000-01;Locus_id=Os12g0103000;Note=EF-Hand type domain containing protein.;Transcript_evidence=AK068622 (DDBJ%2C Best hit);ORF_evidence=NP_850252.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: mitochondrial inner membrane (GO:0005743),Molecular Function: binding (GO:0005488),Molecular Function: calcium ion binding (GO:0005509);InterPro=Mitochondrial carrier protein (IPR002067),EF-hand-like domain (IPR011992),Mitochondrial substrate/solute carrier (IPR018108),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J013154A11;Oryzabase=22707;Expression=AK068622;TENOR=Os12t0103000-01;KEGG=Os12t0103000-01
Chr12	irgsp1_rep	five_prime_UTR	140967	141056	.	-	.	Parent=Os12t0103000-01
Chr12	irgsp1_rep	CDS	140315	140966	.	-	0	Parent=Os12t0103000-01
Chr12	irgsp1_rep	CDS	139177	139594	.	-	2	Parent=Os12t0103000-01
Chr12	irgsp1_rep	CDS	138847	138991	.	-	1	Parent=Os12t0103000-01
Chr12	irgsp1_rep	CDS	138268	138383	.	-	0	Parent=Os12t0103000-01
Chr12	irgsp1_rep	CDS	138118	138196	.	-	1	Parent=Os12t0103000-01
Chr12	irgsp1_rep	CDS	137564	137797	.	-	0	Parent=Os12t0103000-01
Chr12	irgsp1_rep	CDS	136627	136983	.	-	0	Parent=Os12t0103000-01
Chr12	irgsp1_rep	three_prime_UTR	136532	136626	.	-	.	Parent=Os12t0103000-01
Chr12	irgsp1_rep	mRNA	150863	152571	.	+	.	ID=Os12t0103150-00;Name=Os12t0103150-00;Locus_id=Os12g0103150;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0005f14 (Wheat FLcDNA);ORF_evidence=A3C7T1 (UniProt);TENOR=Os12t0103150-00
Chr12	irgsp1_rep	CDS	150863	151126	.	+	0	Parent=Os12t0103150-00
Chr12	irgsp1_rep	CDS	152177	152362	.	+	0	Parent=Os12t0103150-00
Chr12	irgsp1_rep	three_prime_UTR	152363	152571	.	+	.	Parent=Os12t0103150-00
Chr12	irgsp1_rep	mRNA	156368	157069	.	-	.	ID=Os12t0103300-01;Name=Os12t0103300-01;Locus_id=Os12g0103300;Note=Preprotein translocase Sec%2C Sec61-beta subunit domain containing protein.;Transcript_evidence=AK241781 (DDBJ%2C Best hit);ORF_evidence=Q2QYX6 (UniProt);InterPro=Preprotein translocase Sec%2C Sec61-beta subunit (IPR005609),Preprotein translocase Sec%2C Sec61-beta subunit%2C eukarya (IPR016482);NIAS_FLcDNA=J065206G13;TENOR=Os12t0103300-01;KEGG=Os12t0103300-01
Chr12	irgsp1_rep	CDS	156961	157069	.	-	0	Parent=Os12t0103300-01
Chr12	irgsp1_rep	CDS	156700	156899	.	-	2	Parent=Os12t0103300-01
Chr12	irgsp1_rep	three_prime_UTR	156368	156699	.	-	.	Parent=Os12t0103300-01
Chr12	irgsp1_rep	mRNA	166493	168419	.	+	.	ID=Os12t0103500-00;Name=Os12t0103500-00;Locus_id=Os12g0103500;Note=Ribosome-inactivating protein domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001176746.1 (RefSeq);GO=Biological Process: negative regulation of translation (GO:0017148),Molecular Function: rRNA N-glycosylase activity (GO:0030598);InterPro=Ribosome-inactivating protein (IPR001574);TENOR=Os12t0103500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	166493	166624	.	+	0	Parent=Os12t0103500-00
Chr12	irgsp1_rep	CDS	167248	167459	.	+	0	Parent=Os12t0103500-00
Chr12	irgsp1_rep	CDS	167528	167602	.	+	1	Parent=Os12t0103500-00
Chr12	irgsp1_rep	CDS	167819	168419	.	+	1	Parent=Os12t0103500-00
Chr12	irgsp1_rep	mRNA	166743	168159	.	-	.	ID=Os12t0103540-01;Name=Os12t0103540-01;Locus_id=Os12g0103540;Note=Non-protein coding transcript.;Transcript_evidence=AK120008 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-186-A07;TENOR=Os12t0103540-01
Chr12	irgsp1_rep	exon	166743	168159	.	-	.	Parent=Os12t0103540-01
Chr12	irgsp1_rep	mRNA	168472	169377	.	+	.	ID=Os12t0103580-00;Name=Os12t0103580-00;Locus_id=Os12g0103580;Note=Peptidase C48%2C SUMO/Sentrin/Ubl1 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3CE39 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase C48%2C SUMO/Sentrin/Ubl1 (IPR003653);TENOR=Os12t0103580-00;KEGG=Os12t0103580-00 (EC:3.4.22.-)
Chr12	irgsp1_rep	CDS	168472	169377	.	+	0	Parent=Os12t0103580-00
Chr12	irgsp1_rep	mRNA	205970	207000	.	+	.	ID=Os12t0104200-00;Name=Os12t0104200-00;Locus_id=Os12g0104200;Note=Conserved hypothetical protein.;Transcript_evidence=AK374938 (DDBJ);ORF_evidence=NP_001065924.2 (RefSeq);TENOR=Os12t0104200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	205970	206233	.	+	0	Parent=Os12t0104200-00
Chr12	irgsp1_rep	CDS	206317	207000	.	+	0	Parent=Os12t0104200-00
Chr12	irgsp1_rep	mRNA	210190	213372	.	-	.	ID=Os12t0104250-01;Name=Os12t0104250-01;Locus_id=Os12g0104250;Note=Hypothetical gene.;Transcript_evidence=AK288661 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090057O08;TENOR=Os12t0104250-01;KEGG=Os12t0104250-01
Chr12	irgsp1_rep	five_prime_UTR	212278	213372	.	-	.	Parent=Os12t0104250-01
Chr12	irgsp1_rep	CDS	211750	212277	.	-	0	Parent=Os12t0104250-01
Chr12	irgsp1_rep	three_prime_UTR	210190	211749	.	-	.	Parent=Os12t0104250-01
Chr12	irgsp1_rep	mRNA	220457	225793	.	+	.	ID=Os12t0104300-01;Name=Os12t0104300-01;Locus_id=Os12g0104300;Oryzabase Gene Symbol Synonym(s)=D53-like;Note=Clp%2C N-terminal domain containing protein.;Transcript_evidence=AK065998 (DDBJ%2C Best hit);ORF_evidence=B8BNS4 (UniProt);GO=Biological Process: protein metabolic process (GO:0019538);InterPro=Clp%2C N-terminal (IPR004176),Double Clp-N motif (IPR023150);NIAS_FLcDNA=J013049L21;Oryzabase=15198;Expression=AK065998;TENOR=Os12t0104300-01;KEGG=Os12t0104300-01
Chr12	irgsp1_rep	five_prime_UTR	220457	220662	.	+	.	Parent=Os12t0104300-01
Chr12	irgsp1_rep	CDS	220663	221843	.	+	0	Parent=Os12t0104300-01
Chr12	irgsp1_rep	CDS	223201	223447	.	+	1	Parent=Os12t0104300-01
Chr12	irgsp1_rep	CDS	223574	225535	.	+	0	Parent=Os12t0104300-01
Chr12	irgsp1_rep	three_prime_UTR	225536	225793	.	+	.	Parent=Os12t0104300-01
Chr12	irgsp1_rep	mRNA	220525	222856	.	+	.	ID=Os12t0104300-02;Name=Os12t0104300-02;Locus_id=Os12g0104300;Oryzabase Gene Symbol Synonym(s)=D53-like;Note=Hypothetical conserved gene.;Transcript_evidence=AK107459 (DDBJ%2C Best hit);ORF_evidence=NP_001065527.2 (RefSeq);GO=Biological Process: protein metabolic process (GO:0019538);InterPro=Clp%2C N-terminal (IPR004176),Double Clp-N motif (IPR023150);NIAS_FLcDNA=002-129-A02;Oryzabase=15198;Expression=AK107459;TENOR=Os12t0104300-02;KEGG=Os12t0104300-02
Chr12	irgsp1_rep	five_prime_UTR	220525	220662	.	+	.	Parent=Os12t0104300-02
Chr12	irgsp1_rep	CDS	220663	221928	.	+	0	Parent=Os12t0104300-02
Chr12	irgsp1_rep	three_prime_UTR	221929	222856	.	+	.	Parent=Os12t0104300-02
Chr12	irgsp1_rep	mRNA	226239	230184	.	-	.	ID=Os12t0104400-01;Name=Os12t0104400-01;Locus_id=Os12g0104400;Note=Fatty acid desaturase%2C type 1 domain containing protein.;Transcript_evidence=AK071185 (DDBJ%2C Best hit);ORF_evidence=P94013 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water (GO:0016717);InterPro=Fatty acid desaturase%2C type 1 (IPR005804),Protein of unknown function DUF3474 (IPR021863);NIAS_FLcDNA=J023083P12;Oryzabase=22708;Expression=AK071185;TENOR=Os12t0104400-01;KEGG=Os12t0104400-01 (EC:1.14.19.-)
Chr12	irgsp1_rep	five_prime_UTR	229965	230184	.	-	.	Parent=Os12t0104400-01
Chr12	irgsp1_rep	CDS	229660	229964	.	-	0	Parent=Os12t0104400-01
Chr12	irgsp1_rep	CDS	229458	229547	.	-	1	Parent=Os12t0104400-01
Chr12	irgsp1_rep	CDS	228797	228863	.	-	1	Parent=Os12t0104400-01
Chr12	irgsp1_rep	CDS	227853	227945	.	-	0	Parent=Os12t0104400-01
Chr12	irgsp1_rep	CDS	227523	227708	.	-	0	Parent=Os12t0104400-01
Chr12	irgsp1_rep	CDS	227315	227392	.	-	0	Parent=Os12t0104400-01
Chr12	irgsp1_rep	CDS	226989	227126	.	-	0	Parent=Os12t0104400-01
Chr12	irgsp1_rep	CDS	226670	226870	.	-	0	Parent=Os12t0104400-01
Chr12	irgsp1_rep	three_prime_UTR	226239	226669	.	-	.	Parent=Os12t0104400-01
Chr12	irgsp1_rep	mRNA	242968	247298	.	+	.	ID=Os12t0104700-01;Name=Os12t0104700-01;Locus_id=Os12g0104700;CGSNL Gene Symbol=XOAT3;CGSNL Gene Name=XYLAN O-ACETYLTRANSFERASE 3;Oryzabase Gene Symbol Synonym(s)=OsTBL9%2C TBL9%2C OsXOAT3;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 9%2C xylan O-acetyltransferase 3;Note=Protein of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=AK067342 (DDBJ%2C Best hit);ORF_evidence=NP_191158.1 (RefSeq);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=J013106M21;Oryzabase=21464;Expression=AK067342;TENOR=Os12t0104700-01;KEGG=Os12t0104700-01
Chr12	irgsp1_rep	five_prime_UTR	242968	243015	.	+	.	Parent=Os12t0104700-01
Chr12	irgsp1_rep	CDS	243016	243467	.	+	0	Parent=Os12t0104700-01
Chr12	irgsp1_rep	CDS	243547	243918	.	+	1	Parent=Os12t0104700-01
Chr12	irgsp1_rep	CDS	244027	244182	.	+	1	Parent=Os12t0104700-01
Chr12	irgsp1_rep	CDS	246704	247091	.	+	1	Parent=Os12t0104700-01
Chr12	irgsp1_rep	three_prime_UTR	247092	247298	.	+	.	Parent=Os12t0104700-01
Chr12	irgsp1_rep	mRNA	249576	253965	.	-	.	ID=Os12t0104733-00;Name=Os12t0104733-00;Locus_id=Os12g0104733;Note=Hypothetical protein.;Transcript_evidence=tplb0050e20 (Wheat FLcDNA);ORF_evidence=longestORF;Oryzabase=22709;TENOR=Os12t0104733-00
Chr12	irgsp1_rep	five_prime_UTR	253835	253965	.	-	.	Parent=Os12t0104733-00
Chr12	irgsp1_rep	five_prime_UTR	253533	253726	.	-	.	Parent=Os12t0104733-00
Chr12	irgsp1_rep	five_prime_UTR	252969	253081	.	-	.	Parent=Os12t0104733-00
Chr12	irgsp1_rep	five_prime_UTR	252752	252832	.	-	.	Parent=Os12t0104733-00
Chr12	irgsp1_rep	five_prime_UTR	252461	252674	.	-	.	Parent=Os12t0104733-00
Chr12	irgsp1_rep	five_prime_UTR	252307	252377	.	-	.	Parent=Os12t0104733-00
Chr12	irgsp1_rep	five_prime_UTR	251971	252067	.	-	.	Parent=Os12t0104733-00
Chr12	irgsp1_rep	five_prime_UTR	251757	251875	.	-	.	Parent=Os12t0104733-00
Chr12	irgsp1_rep	five_prime_UTR	251441	251548	.	-	.	Parent=Os12t0104733-00
Chr12	irgsp1_rep	five_prime_UTR	251229	251323	.	-	.	Parent=Os12t0104733-00
Chr12	irgsp1_rep	five_prime_UTR	251049	251120	.	-	.	Parent=Os12t0104733-00
Chr12	irgsp1_rep	five_prime_UTR	250061	250082	.	-	.	Parent=Os12t0104733-00
Chr12	irgsp1_rep	CDS	249875	250060	.	-	0	Parent=Os12t0104733-00
Chr12	irgsp1_rep	CDS	249703	249774	.	-	0	Parent=Os12t0104733-00
Chr12	irgsp1_rep	three_prime_UTR	249576	249702	.	-	.	Parent=Os12t0104733-00
Chr12	irgsp1_rep	mRNA	249725	254663	.	+	.	ID=Os12t0104766-00;Name=Os12t0104766-00;Locus_id=Os12g0104766;Oryzabase Gene Name Synonym(s)=Clathrin heavy chain binding;Note=Similar to Clathrin heavy chain.;Transcript_evidence=ab initio prediction;ORF_evidence=Q39834 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: clathrin coat of trans-Golgi network vesicle (GO:0030130),Cellular Component: clathrin coat of coated pit (GO:0030132),Molecular Function: structural molecule activity (GO:0005198),Molecular Function: binding (GO:0005488);InterPro=Clathrin%2C heavy chain%2C propeller%2C N-terminal (IPR001473),Clathrin%2C heavy chain%2C linker%2C core motif (IPR015348),Armadillo-type fold (IPR016024),Clathrin%2C heavy chain%2C linker/propeller domain (IPR016025),Clathrin%2C heavy chain%2C propeller repeat (IPR022365);Oryzabase=20155;TENOR=Os12t0104766-00
Chr12	irgsp1_rep	CDS	249725	249769	.	+	0	Parent=Os12t0104766-00
Chr12	irgsp1_rep	CDS	249870	250074	.	+	0	Parent=Os12t0104766-00
Chr12	irgsp1_rep	CDS	251040	251128	.	+	2	Parent=Os12t0104766-00
Chr12	irgsp1_rep	CDS	251237	251315	.	+	0	Parent=Os12t0104766-00
Chr12	irgsp1_rep	CDS	251429	251556	.	+	2	Parent=Os12t0104766-00
Chr12	irgsp1_rep	CDS	251764	251862	.	+	0	Parent=Os12t0104766-00
Chr12	irgsp1_rep	CDS	251953	252061	.	+	0	Parent=Os12t0104766-00
Chr12	irgsp1_rep	CDS	252301	252380	.	+	2	Parent=Os12t0104766-00
Chr12	irgsp1_rep	CDS	252464	252691	.	+	0	Parent=Os12t0104766-00
Chr12	irgsp1_rep	CDS	252768	252833	.	+	0	Parent=Os12t0104766-00
Chr12	irgsp1_rep	CDS	252970	253086	.	+	0	Parent=Os12t0104766-00
Chr12	irgsp1_rep	CDS	253538	253735	.	+	0	Parent=Os12t0104766-00
Chr12	irgsp1_rep	CDS	254056	254115	.	+	0	Parent=Os12t0104766-00
Chr12	irgsp1_rep	CDS	254228	254314	.	+	0	Parent=Os12t0104766-00
Chr12	irgsp1_rep	CDS	254419	254502	.	+	0	Parent=Os12t0104766-00
Chr12	irgsp1_rep	CDS	254601	254663	.	+	0	Parent=Os12t0104766-00
Chr12	irgsp1_rep	mRNA	258856	259873	.	+	.	ID=Os12t0104800-01;Name=Os12t0104800-01;Locus_id=Os12g0104800;Oryzabase Gene Name Synonym(s)=Clathrin heavy chain binding;Note=Similar to Clathrin heavy chain.;Transcript_evidence=AK058226 (DDBJ%2C Best hit);ORF_evidence=Q39834 (UniProt);NIAS_FLcDNA=001-010-H07;Oryzabase=20155;Expression=AK058226;TENOR=Os12t0104800-01;KEGG=Os12t0104800-01
Chr12	irgsp1_rep	CDS	258856	258942	.	+	0	Parent=Os12t0104800-01
Chr12	irgsp1_rep	CDS	259024	259134	.	+	0	Parent=Os12t0104800-01
Chr12	irgsp1_rep	CDS	259225	259395	.	+	0	Parent=Os12t0104800-01
Chr12	irgsp1_rep	three_prime_UTR	259396	259873	.	+	.	Parent=Os12t0104800-01
Chr12	irgsp1_rep	mRNA	259474	259794	.	+	.	ID=Os12t0104800-02;Name=Os12t0104800-02;Locus_id=Os12g0104800;Oryzabase Gene Name Synonym(s)=Clathrin heavy chain binding;Note=Non-protein coding transcript.;Transcript_evidence=AK058259 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-012-E12;Oryzabase=20155;TENOR=Os12t0104800-02
Chr12	irgsp1_rep	exon	259474	259794	.	+	.	Parent=Os12t0104800-02
Chr12	irgsp1_rep	mRNA	260563	261472	.	+	.	ID=Os12t0104850-01;Name=Os12t0104850-01;Locus_id=Os12g0104850;Note=Hypothetical gene.;Transcript_evidence=AK241127 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065096B12;TENOR=Os12t0104850-01;KEGG=Os12t0104850-01
Chr12	irgsp1_rep	five_prime_UTR	260563	260842	.	+	.	Parent=Os12t0104850-01
Chr12	irgsp1_rep	CDS	260843	261064	.	+	0	Parent=Os12t0104850-01
Chr12	irgsp1_rep	three_prime_UTR	261065	261472	.	+	.	Parent=Os12t0104850-01
Chr12	irgsp1_rep	mRNA	260424	261044	.	-	.	ID=Os12t0104900-00;Name=Os12t0104900-00;Locus_id=Os12g0104900;CGSNL Gene Symbol=CML26;CGSNL Gene Name=CALMODULIN-LIKE PROTEIN 26;Oryzabase Gene Symbol Synonym(s)=OsCML26;Oryzabase Gene Name Synonym(s)=calmodulin-like protein 26;Note=EF-HAND 2 domain containing protein.;Transcript_evidence=AK367395 (DDBJ);ORF_evidence=B7E7Q9 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);Oryzabase=9333;TENOR=Os12t0104900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	261031	261044	.	-	.	Parent=Os12t0104900-00
Chr12	irgsp1_rep	CDS	260581	261030	.	-	0	Parent=Os12t0104900-00
Chr12	irgsp1_rep	three_prime_UTR	260424	260580	.	-	.	Parent=Os12t0104900-00
Chr12	irgsp1_rep	mRNA	266076	266968	.	+	.	ID=Os12t0105150-00;Name=Os12t0105150-00;Locus_id=Os12g0105150;Note=Hypothetical protein.;Transcript_evidence=BT054429 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0105150-00
Chr12	irgsp1_rep	five_prime_UTR	266076	266077	.	+	.	Parent=Os12t0105150-00
Chr12	irgsp1_rep	CDS	266078	266968	.	+	0	Parent=Os12t0105150-00
Chr12	irgsp1_rep	mRNA	267897	269698	.	-	.	ID=Os12t0105200-00;Name=Os12t0105200-00;Locus_id=Os12g0105200;Oryzabase Gene Name Synonym(s)=mRNA turnover protein 4;Note=Similar to mRNA turnover protein 4.;Transcript_evidence=EU960278 (DDBJ);ORF_evidence=Q2QYV8 (UniProt);GO=Biological Process: ribosome biogenesis (GO:0042254),Cellular Component: intracellular (GO:0005622);InterPro=Ribosomal protein L10/acidic P0 (IPR001790);Oryzabase=20157;TENOR=Os12t0105200-00;KEGG=Os12t0105200-00
Chr12	irgsp1_rep	CDS	269481	269698	.	-	0	Parent=Os12t0105200-00
Chr12	irgsp1_rep	CDS	269176	269266	.	-	1	Parent=Os12t0105200-00
Chr12	irgsp1_rep	CDS	269021	269079	.	-	0	Parent=Os12t0105200-00
Chr12	irgsp1_rep	CDS	268864	268924	.	-	1	Parent=Os12t0105200-00
Chr12	irgsp1_rep	CDS	268450	268540	.	-	0	Parent=Os12t0105200-00
Chr12	irgsp1_rep	CDS	268290	268366	.	-	2	Parent=Os12t0105200-00
Chr12	irgsp1_rep	CDS	267954	268079	.	-	0	Parent=Os12t0105200-00
Chr12	irgsp1_rep	three_prime_UTR	267897	267953	.	-	.	Parent=Os12t0105200-00
Chr12	irgsp1_rep	mRNA	273660	282070	.	-	.	ID=Os12t0105300-01;Name=Os12t0105300-01;Locus_id=Os12g0105300;Note=Actin-binding FH2 domain containing protein.;Transcript_evidence=AK072914 (DDBJ%2C Best hit);ORF_evidence=NP_189197.2 (RefSeq);InterPro=Actin-binding FH2 (IPR015425);NIAS_FLcDNA=J023150I16;TENOR=Os12t0105300-01
Chr12	irgsp1_rep	five_prime_UTR	281866	282070	.	-	.	Parent=Os12t0105300-01
Chr12	irgsp1_rep	CDS	281787	281865	.	-	0	Parent=Os12t0105300-01
Chr12	irgsp1_rep	CDS	281649	281695	.	-	2	Parent=Os12t0105300-01
Chr12	irgsp1_rep	CDS	280841	281545	.	-	0	Parent=Os12t0105300-01
Chr12	irgsp1_rep	CDS	276038	277330	.	-	0	Parent=Os12t0105300-01
Chr12	irgsp1_rep	CDS	275781	275912	.	-	0	Parent=Os12t0105300-01
Chr12	irgsp1_rep	CDS	275521	275702	.	-	0	Parent=Os12t0105300-01
Chr12	irgsp1_rep	CDS	275264	275375	.	-	1	Parent=Os12t0105300-01
Chr12	irgsp1_rep	CDS	275026	275169	.	-	0	Parent=Os12t0105300-01
Chr12	irgsp1_rep	CDS	273848	273943	.	-	0	Parent=Os12t0105300-01
Chr12	irgsp1_rep	three_prime_UTR	273660	273847	.	-	.	Parent=Os12t0105300-01
Chr12	irgsp1_rep	mRNA	273664	276665	.	-	.	ID=Os12t0105300-02;Name=Os12t0105300-02;Locus_id=Os12g0105300;Note=Actin-binding FH2 domain containing protein.;Transcript_evidence=AK062121 (DDBJ%2C Best hit);ORF_evidence=NP_189197.2 (RefSeq);InterPro=Actin-binding FH2 (IPR015425);NIAS_FLcDNA=001-045-D01;Expression=AK062121;TENOR=Os12t0105300-02;KEGG=Os12t0105300-02
Chr12	irgsp1_rep	five_prime_UTR	276665	276665	.	-	.	Parent=Os12t0105300-02
Chr12	irgsp1_rep	CDS	276038	276664	.	-	0	Parent=Os12t0105300-02
Chr12	irgsp1_rep	CDS	275781	275912	.	-	0	Parent=Os12t0105300-02
Chr12	irgsp1_rep	CDS	275521	275702	.	-	0	Parent=Os12t0105300-02
Chr12	irgsp1_rep	CDS	275264	275375	.	-	1	Parent=Os12t0105300-02
Chr12	irgsp1_rep	CDS	275026	275169	.	-	0	Parent=Os12t0105300-02
Chr12	irgsp1_rep	CDS	273848	273943	.	-	0	Parent=Os12t0105300-02
Chr12	irgsp1_rep	three_prime_UTR	273664	273847	.	-	.	Parent=Os12t0105300-02
Chr12	irgsp1_rep	mRNA	273664	281955	.	-	.	ID=Os12t0105300-03;Name=Os12t0105300-03;Locus_id=Os12g0105300;Note=Actin-binding FH2 domain containing protein.;Transcript_evidence=AK099132 (DDBJ%2C Best hit);ORF_evidence=NP_189197.2 (RefSeq);InterPro=Actin-binding FH2 (IPR015425);NIAS_FLcDNA=J023051M04;TENOR=Os12t0105300-03
Chr12	irgsp1_rep	five_prime_UTR	281866	281955	.	-	.	Parent=Os12t0105300-03
Chr12	irgsp1_rep	CDS	281787	281865	.	-	0	Parent=Os12t0105300-03
Chr12	irgsp1_rep	CDS	281649	281695	.	-	2	Parent=Os12t0105300-03
Chr12	irgsp1_rep	CDS	280841	281545	.	-	0	Parent=Os12t0105300-03
Chr12	irgsp1_rep	CDS	276038	277330	.	-	0	Parent=Os12t0105300-03
Chr12	irgsp1_rep	CDS	275781	275912	.	-	0	Parent=Os12t0105300-03
Chr12	irgsp1_rep	CDS	275521	275702	.	-	0	Parent=Os12t0105300-03
Chr12	irgsp1_rep	CDS	275264	275375	.	-	1	Parent=Os12t0105300-03
Chr12	irgsp1_rep	CDS	275026	275169	.	-	0	Parent=Os12t0105300-03
Chr12	irgsp1_rep	CDS	273848	273943	.	-	0	Parent=Os12t0105300-03
Chr12	irgsp1_rep	three_prime_UTR	273664	273847	.	-	.	Parent=Os12t0105300-03
Chr12	irgsp1_rep	mRNA	276001	281941	.	+	.	ID=Os12t0105401-00;Name=Os12t0105401-00;Locus_id=Os12g0105401;Note=Hypothetical gene.;Transcript_evidence=BT085320 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0105401-00;KEGG=Os12t0105401-00
Chr12	irgsp1_rep	five_prime_UTR	276001	276722	.	+	.	Parent=Os12t0105401-00
Chr12	irgsp1_rep	CDS	276723	277166	.	+	0	Parent=Os12t0105401-00
Chr12	irgsp1_rep	three_prime_UTR	277167	277207	.	+	.	Parent=Os12t0105401-00
Chr12	irgsp1_rep	three_prime_UTR	281705	281941	.	+	.	Parent=Os12t0105401-00
Chr12	irgsp1_rep	mRNA	289717	291513	.	-	.	ID=Os12t0105500-01;Name=Os12t0105500-01;Locus_id=Os12g0105500;Note=Similar to Phosphatidate cytidylyltransferase family protein%2C expressed.;Transcript_evidence=AK109049 (DDBJ%2C Best hit);ORF_evidence=Q2QYV3 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Phosphatidate cytidylyltransferase (IPR000374);NIAS_FLcDNA=002-154-E02;TENOR=Os12t0105500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	291485	291513	.	-	.	Parent=Os12t0105500-01
Chr12	irgsp1_rep	CDS	291374	291484	.	-	0	Parent=Os12t0105500-01
Chr12	irgsp1_rep	CDS	291062	291129	.	-	0	Parent=Os12t0105500-01
Chr12	irgsp1_rep	CDS	290805	290939	.	-	1	Parent=Os12t0105500-01
Chr12	irgsp1_rep	CDS	290524	290639	.	-	1	Parent=Os12t0105500-01
Chr12	irgsp1_rep	CDS	290284	290398	.	-	2	Parent=Os12t0105500-01
Chr12	irgsp1_rep	CDS	289931	290201	.	-	1	Parent=Os12t0105500-01
Chr12	irgsp1_rep	three_prime_UTR	289717	289930	.	-	.	Parent=Os12t0105500-01
Chr12	irgsp1_rep	mRNA	296660	298784	.	-	.	ID=Os12t0105600-01;Name=Os12t0105600-01;Locus_id=Os12g0105600;Note=Similar to Phosphate starvation regulator protein (Regulatory protein of P- starvation acclimation response Psr1).;Transcript_evidence=AK107297 (DDBJ%2C Best hit);ORF_evidence=Q2RBM7 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=002-126-C05;Expression=AK107297;TENOR=Os12t0105600-01;KEGG=Os12t0105600-01
Chr12	irgsp1_rep	five_prime_UTR	298632	298784	.	-	.	Parent=Os12t0105600-01
Chr12	irgsp1_rep	CDS	298391	298631	.	-	0	Parent=Os12t0105600-01
Chr12	irgsp1_rep	CDS	298097	298173	.	-	2	Parent=Os12t0105600-01
Chr12	irgsp1_rep	CDS	297929	297965	.	-	0	Parent=Os12t0105600-01
Chr12	irgsp1_rep	CDS	297645	297813	.	-	2	Parent=Os12t0105600-01
Chr12	irgsp1_rep	CDS	296988	297408	.	-	1	Parent=Os12t0105600-01
Chr12	irgsp1_rep	three_prime_UTR	296660	296987	.	-	.	Parent=Os12t0105600-01
Chr12	irgsp1_rep	mRNA	302239	305271	.	-	.	ID=Os12t0105700-01;Name=Os12t0105700-01;Locus_id=Os12g0105700;Note=Bacterial surface antigen (D15) family protein.;Transcript_evidence=AK067668 (DDBJ%2C Best hit);ORF_evidence=B7ECH1 (UniProt);GO=Cellular Component: outer membrane (GO:0019867);InterPro=Bacterial surface antigen (D15) (IPR000184);NIAS_FLcDNA=J013119K16;Expression=AK067668;TENOR=Os12t0105700-01;KEGG=Os12t0105700-01
Chr12	irgsp1_rep	five_prime_UTR	305164	305271	.	-	.	Parent=Os12t0105700-01
Chr12	irgsp1_rep	CDS	304672	305163	.	-	0	Parent=Os12t0105700-01
Chr12	irgsp1_rep	CDS	303552	304034	.	-	0	Parent=Os12t0105700-01
Chr12	irgsp1_rep	CDS	302636	303145	.	-	0	Parent=Os12t0105700-01
Chr12	irgsp1_rep	CDS	302473	302553	.	-	0	Parent=Os12t0105700-01
Chr12	irgsp1_rep	three_prime_UTR	302239	302472	.	-	.	Parent=Os12t0105700-01
Chr12	irgsp1_rep	mRNA	306553	310206	.	-	.	ID=Os12t0105800-01;Name=Os12t0105800-01;Locus_id=Os12g0105800;Note=Tyrosine protein kinase domain containing protein.;Transcript_evidence=AK070979 (DDBJ%2C Best hit);ORF_evidence=Q2QYV0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J023073D05;Expression=AK070979;TENOR=Os12t0105800-01;KEGG=Os12t0105800-01
Chr12	irgsp1_rep	five_prime_UTR	310014	310206	.	-	.	Parent=Os12t0105800-01
Chr12	irgsp1_rep	five_prime_UTR	309545	309834	.	-	.	Parent=Os12t0105800-01
Chr12	irgsp1_rep	CDS	309451	309544	.	-	0	Parent=Os12t0105800-01
Chr12	irgsp1_rep	CDS	309240	309339	.	-	2	Parent=Os12t0105800-01
Chr12	irgsp1_rep	CDS	308668	308790	.	-	1	Parent=Os12t0105800-01
Chr12	irgsp1_rep	CDS	308228	308508	.	-	1	Parent=Os12t0105800-01
Chr12	irgsp1_rep	CDS	307830	308020	.	-	2	Parent=Os12t0105800-01
Chr12	irgsp1_rep	CDS	307580	307759	.	-	0	Parent=Os12t0105800-01
Chr12	irgsp1_rep	three_prime_UTR	306553	307579	.	-	.	Parent=Os12t0105800-01
Chr12	irgsp1_rep	mRNA	306918	308652	.	+	.	ID=Os12t0105850-01;Name=Os12t0105850-01;Locus_id=Os12g0105850;Note=Hypothetical protein.;Transcript_evidence=AK241172 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065118E11;TENOR=Os12t0105850-01;KEGG=Os12t0105850-01
Chr12	irgsp1_rep	five_prime_UTR	306918	307474	.	+	.	Parent=Os12t0105850-01
Chr12	irgsp1_rep	CDS	307475	307768	.	+	0	Parent=Os12t0105850-01
Chr12	irgsp1_rep	three_prime_UTR	307769	308652	.	+	.	Parent=Os12t0105850-01
Chr12	irgsp1_rep	mRNA	312979	314901	.	-	.	ID=Os12t0105950-01;Name=Os12t0105950-01;Locus_id=Os12g0105950;Note=Similar to Ubiquitin-activating enzyme E1.;Transcript_evidence=AK111741 (DDBJ%2C Best hit);ORF_evidence=Q2QYU8 (UniProt);GO=Biological Process: protein modification process (GO:0006464),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: small protein activating enzyme activity (GO:0008641);InterPro=Ubiquitin-activating enzyme repeat (IPR000127),Molybdenum cofactor biosynthesis%2C MoeB (IPR009036),NAD(P)-binding domain (IPR016040),Ubiquitin-activating enzyme%2C E1%2C active site (IPR018074),Ubiquitin-activating enzyme e1%2C C-terminal (IPR018965),Ubiquitin-activating enzyme (IPR019572),Ubiquitin-like 1 activating enzyme%2C catalytic cysteine domain (IPR023280);NIAS_FLcDNA=J023049I12;Expression=AK111741;TENOR=Os12t0105950-01;KEGG=Os12t0105950-01 (EC:6.3.2.19)
Chr12	irgsp1_rep	five_prime_UTR	314901	314901	.	-	.	Parent=Os12t0105950-01
Chr12	irgsp1_rep	CDS	314572	314900	.	-	0	Parent=Os12t0105950-01
Chr12	irgsp1_rep	CDS	313930	314362	.	-	1	Parent=Os12t0105950-01
Chr12	irgsp1_rep	CDS	313152	313748	.	-	0	Parent=Os12t0105950-01
Chr12	irgsp1_rep	three_prime_UTR	312979	313151	.	-	.	Parent=Os12t0105950-01
Chr12	irgsp1_rep	mRNA	312893	314792	.	-	.	ID=Os12t0105950-02;Name=Os12t0105950-02;Locus_id=Os12g0105950;Note=Similar to Ubiquitin-activating enzyme E1.;Transcript_evidence=AK104898 (DDBJ%2C Best hit);ORF_evidence=Q2QYU8 (UniProt);GO=Biological Process: protein modification process (GO:0006464),Molecular Function: ATP binding (GO:0005524),Molecular Function: small protein activating enzyme activity (GO:0008641);InterPro=Ubiquitin-activating enzyme repeat (IPR000127),Molybdenum cofactor biosynthesis%2C MoeB (IPR009036),Ubiquitin-activating enzyme e1%2C C-terminal (IPR018965),Ubiquitin-like 1 activating enzyme%2C catalytic cysteine domain (IPR023280);NIAS_FLcDNA=001-046-C03;Expression=AK104898;TENOR=Os12t0105950-02;KEGG=Os12t0105950-02 (EC:6.3.2.19)
Chr12	irgsp1_rep	CDS	314572	314792	.	-	0	Parent=Os12t0105950-02
Chr12	irgsp1_rep	CDS	313930	314362	.	-	1	Parent=Os12t0105950-02
Chr12	irgsp1_rep	CDS	313152	313748	.	-	0	Parent=Os12t0105950-02
Chr12	irgsp1_rep	three_prime_UTR	312893	313151	.	-	.	Parent=Os12t0105950-02
Chr12	irgsp1_rep	mRNA	313130	318137	.	+	.	ID=Os12t0105962-00;Name=Os12t0105962-00;Locus_id=Os12g0105962;Note=Hypothetical protein.;Transcript_evidence=tplb0053b11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0105962-00
Chr12	irgsp1_rep	five_prime_UTR	313130	313727	.	+	.	Parent=Os12t0105962-00
Chr12	irgsp1_rep	CDS	313728	313730	.	+	0	Parent=Os12t0105962-00
Chr12	irgsp1_rep	CDS	313910	314340	.	+	0	Parent=Os12t0105962-00
Chr12	irgsp1_rep	CDS	314547	314652	.	+	1	Parent=Os12t0105962-00
Chr12	irgsp1_rep	three_prime_UTR	314653	316198	.	+	.	Parent=Os12t0105962-00
Chr12	irgsp1_rep	three_prime_UTR	317111	317309	.	+	.	Parent=Os12t0105962-00
Chr12	irgsp1_rep	three_prime_UTR	318014	318137	.	+	.	Parent=Os12t0105962-00
Chr12	irgsp1_rep	mRNA	315427	318257	.	-	.	ID=Os12t0105975-00;Name=Os12t0105975-00;Locus_id=Os12g0105975;Note=Similar to Ubiquitin-activating enzyme E1.;Transcript_evidence=P20973 (UniProt);ORF_evidence=B9GBE8 (UniProt);GO=Biological Process: protein modification process (GO:0006464),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: small protein activating enzyme activity (GO:0008641);InterPro=Ubiquitin/SUMO-activating enzyme E1 (IPR000011),UBA/THIF-type NAD/FAD binding fold (IPR000594),Molybdenum cofactor biosynthesis%2C MoeB (IPR009036),NAD(P)-binding domain (IPR016040);TENOR=Os12t0105975-00
Chr12	irgsp1_rep	CDS	318020	318257	.	-	0	Parent=Os12t0105975-00
Chr12	irgsp1_rep	CDS	317100	317317	.	-	2	Parent=Os12t0105975-00
Chr12	irgsp1_rep	CDS	315535	316192	.	-	0	Parent=Os12t0105975-00
Chr12	irgsp1_rep	CDS	315427	315440	.	-	2	Parent=Os12t0105975-00
Chr12	irgsp1_rep	mRNA	320568	323716	.	-	.	ID=Os12t0106000-01;Name=Os12t0106000-01;Locus_id=Os12g0106000;RAP-DB Gene Symbol Synonym(s)=FER2%2C OsFER2%2C OsFer2;RAP-DB Gene Name Synonym(s)=FERRITIN 2;CGSNL Gene Symbol=FER2;CGSNL Gene Name=FERRITIN 2;Oryzabase Gene Symbol Synonym(s)=OsFER2%2C OsFer2;Note=Ferritin%2C Iron storage protein%2C Iron homeostasis;Transcript_evidence=AK102242,AF519571;ORF_evidence=Q8L5K0;GO=Biological Process: iron ion transport (GO:0006826),Biological Process: cellular iron ion homeostasis (GO:0006879),Molecular Function: ferric iron binding (GO:0008199);InterPro=Ferritin (IPR001519),Ferritin-like superfamily (IPR009078),Ferritin-related (IPR012347),Ferritin-like diiron domain (IPR009040),Ferritin/DPS protein domain (IPR008331),Ferritin%2C conserved site (IPR014034);NIAS_FLcDNA=J033088E01;Manual Curation=February 22%2C 2017;Literature_PMID=22992483,DOI: 10.1590/S1415-47572003000400012;Oryzabase=8317;Expression=AK102242;TENOR=Os12t0106000-01;KEGG=Os12t0106000-01 (EC:1.16.3.1)
Chr12	irgsp1_rep	five_prime_UTR	323631	323716	.	-	.	Parent=Os12t0106000-01
Chr12	irgsp1_rep	CDS	323332	323630	.	-	0	Parent=Os12t0106000-01
Chr12	irgsp1_rep	CDS	322542	322625	.	-	1	Parent=Os12t0106000-01
Chr12	irgsp1_rep	CDS	322401	322461	.	-	1	Parent=Os12t0106000-01
Chr12	irgsp1_rep	CDS	322211	322298	.	-	0	Parent=Os12t0106000-01
Chr12	irgsp1_rep	CDS	321397	321458	.	-	2	Parent=Os12t0106000-01
Chr12	irgsp1_rep	CDS	321198	321263	.	-	0	Parent=Os12t0106000-01
Chr12	irgsp1_rep	CDS	321021	321084	.	-	0	Parent=Os12t0106000-01
Chr12	irgsp1_rep	CDS	320871	320914	.	-	2	Parent=Os12t0106000-01
Chr12	irgsp1_rep	three_prime_UTR	320568	320870	.	-	.	Parent=Os12t0106000-01
Chr12	irgsp1_rep	mRNA	324750	328087	.	+	.	ID=Os12t0106100-00;Name=Os12t0106100-00;Locus_id=Os12g0106100;Note=Hypothetical conserved gene.;Transcript_evidence=EU965912 (DDBJ);ORF_evidence=NP_001065937.1 (RefSeq);TENOR=Os12t0106100-00;KEGG=Os12t0106100-00
Chr12	irgsp1_rep	CDS	324750	325097	.	+	0	Parent=Os12t0106100-00
Chr12	irgsp1_rep	CDS	325415	325558	.	+	0	Parent=Os12t0106100-00
Chr12	irgsp1_rep	CDS	326070	326211	.	+	0	Parent=Os12t0106100-00
Chr12	irgsp1_rep	CDS	326797	326963	.	+	2	Parent=Os12t0106100-00
Chr12	irgsp1_rep	three_prime_UTR	326964	327011	.	+	.	Parent=Os12t0106100-00
Chr12	irgsp1_rep	three_prime_UTR	327891	328087	.	+	.	Parent=Os12t0106100-00
Chr12	irgsp1_rep	mRNA	331023	331715	.	+	.	ID=Os12t0106200-01;Name=Os12t0106200-01;Locus_id=Os12g0106200;RAP-DB Gene Symbol Synonym(s)=LBD12-1;Oryzabase Gene Symbol Synonym(s)=LBD12-1;Oryzabase Gene Name Synonym(s)=LBD family transcription factor 12-1%2C lateral organ boundaries domain protein 12-1;Note=Lateral organ boundaries domain (LBD) family transcription factor%2C Shoot apical meristem (SAM) size determination;Transcript_evidence=AK109211;ORF_evidence=Q2QYU3;InterPro=Lateral organ boundaries%2C LOB (IPR004883);NIAS_FLcDNA=002-156-D02;Manual Curation=January 10%2C 2017;Literature_PMID=27895202;Oryzabase=21577;Expression=AK109211;TENOR=Os12t0106200-01;KEGG=Os12t0106200-01
Chr12	irgsp1_rep	five_prime_UTR	331023	331097	.	+	.	Parent=Os12t0106200-01
Chr12	irgsp1_rep	CDS	331098	331568	.	+	0	Parent=Os12t0106200-01
Chr12	irgsp1_rep	three_prime_UTR	331569	331715	.	+	.	Parent=Os12t0106200-01
Chr12	irgsp1_rep	mRNA	337846	341464	.	+	.	ID=Os12t0106300-01;Name=Os12t0106300-01;Locus_id=Os12g0106300;RAP-DB Gene Symbol Synonym(s)=OsTBL1%2C TBL1;RAP-DB Gene Name Synonym(s)=trichome birefringence-like 1;CGSNL Gene Symbol=XOAT13;CGSNL Gene Name=XYLAN O-ACETYLTRANSFERASE 13;Oryzabase Gene Symbol Synonym(s)=OsTBL1%2C TBL1%2C OsXOAT13;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 1%2C xylan O-acetyltransferase 13;Note=Xylan acetyltransferase%2C Resistance to bacterial leaf blight disease;Transcript_evidence=AK060755;ORF_evidence=Q2QYU2;InterPro=PC-Esterase (IPR026057),Trichome birefringence-like family (IPR029962),PMR5 N-terminal domain (IPR025846);NIAS_FLcDNA=001-032-H01;Manual Curation=January 4%2C 2017;Literature_PMID=27864442;Oryzabase=21456;Expression=AK060755;TENOR=Os12t0106300-01;KEGG=Os12t0106300-01
Chr12	irgsp1_rep	five_prime_UTR	337846	337992	.	+	.	Parent=Os12t0106300-01
Chr12	irgsp1_rep	CDS	337993	338612	.	+	0	Parent=Os12t0106300-01
Chr12	irgsp1_rep	CDS	339727	339898	.	+	1	Parent=Os12t0106300-01
Chr12	irgsp1_rep	CDS	339996	340204	.	+	0	Parent=Os12t0106300-01
Chr12	irgsp1_rep	CDS	340414	340572	.	+	1	Parent=Os12t0106300-01
Chr12	irgsp1_rep	CDS	340914	341262	.	+	1	Parent=Os12t0106300-01
Chr12	irgsp1_rep	three_prime_UTR	341263	341464	.	+	.	Parent=Os12t0106300-01
Chr12	irgsp1_rep	mRNA	345000	349385	.	+	.	ID=Os12t0106500-00;Name=Os12t0106500-00;Locus_id=Os12g0106500;CGSNL Gene Symbol=MFS7;CGSNL Gene Name=MAJOR FACILITATOR SUPERFAMILY 7;Oryzabase Gene Symbol Synonym(s)=OsMFS7;Oryzabase Gene Name Synonym(s)=major facilitator superfamily 7;Note=Similar to predicted protein.;Transcript_evidence=AK065945 (DDBJ%2C Secondary hit);ORF_evidence=Q2QYU1 (UniProt);InterPro=PUCC protein (IPR004896),Nodulin-like (IPR010658),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);Oryzabase=21390;Expression=AK065945;TENOR=Os12t0106500-00;KEGG=Os12t0106500-00
Chr12	irgsp1_rep	five_prime_UTR	345000	345083	.	+	.	Parent=Os12t0106500-00
Chr12	irgsp1_rep	CDS	345084	345452	.	+	0	Parent=Os12t0106500-00
Chr12	irgsp1_rep	CDS	347672	348546	.	+	0	Parent=Os12t0106500-00
Chr12	irgsp1_rep	CDS	348635	349145	.	+	1	Parent=Os12t0106500-00
Chr12	irgsp1_rep	three_prime_UTR	349146	349385	.	+	.	Parent=Os12t0106500-00
Chr12	irgsp1_rep	mRNA	345069	349286	.	-	.	ID=Os12t0106525-00;Name=Os12t0106525-00;Locus_id=Os12g0106525;Note=Hypothetical protein.;Transcript_evidence=tplb0040d22 (Wheat FLcDNA);ORF_evidence=GeneMark;TENOR=Os12t0106525-00
Chr12	irgsp1_rep	five_prime_UTR	348860	349286	.	-	.	Parent=Os12t0106525-00
Chr12	irgsp1_rep	CDS	348632	348859	.	-	0	Parent=Os12t0106525-00
Chr12	irgsp1_rep	CDS	348541	348543	.	-	0	Parent=Os12t0106525-00
Chr12	irgsp1_rep	three_prime_UTR	347665	348540	.	-	.	Parent=Os12t0106525-00
Chr12	irgsp1_rep	three_prime_UTR	345069	345449	.	-	.	Parent=Os12t0106525-00
Chr12	irgsp1_rep	mRNA	346323	350615	.	-	.	ID=Os12t0106550-01;Name=Os12t0106550-01;Locus_id=Os12g0106550;Note=Conserved hypothetical protein.;Transcript_evidence=AK242251 (DDBJ%2C Best hit);ORF_evidence=NP_001176751.1 (RefSeq);NIAS_FLcDNA=J075182C22;TENOR=Os12t0106550-01;KEGG=Os12t0106550-01
Chr12	irgsp1_rep	five_prime_UTR	350545	350615	.	-	.	Parent=Os12t0106550-01
Chr12	irgsp1_rep	five_prime_UTR	350370	350457	.	-	.	Parent=Os12t0106550-01
Chr12	irgsp1_rep	CDS	350279	350369	.	-	0	Parent=Os12t0106550-01
Chr12	irgsp1_rep	CDS	350058	350176	.	-	2	Parent=Os12t0106550-01
Chr12	irgsp1_rep	three_prime_UTR	350015	350057	.	-	.	Parent=Os12t0106550-01
Chr12	irgsp1_rep	three_prime_UTR	347176	347315	.	-	.	Parent=Os12t0106550-01
Chr12	irgsp1_rep	three_prime_UTR	346323	347069	.	-	.	Parent=Os12t0106550-01
Chr12	irgsp1_rep	mRNA	350772	355072	.	+	.	ID=Os12t0106600-01;Name=Os12t0106600-01;Locus_id=Os12g0106600;Note=Similar to MATE efflux family protein%2C expressed.;Transcript_evidence=AK064975 (DDBJ%2C Best hit);ORF_evidence=Q2QYU0 (UniProt);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);NIAS_FLcDNA=J013001B22;TENOR=Os12t0106600-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	350772	350797	.	+	.	Parent=Os12t0106600-01
Chr12	irgsp1_rep	CDS	350798	351173	.	+	0	Parent=Os12t0106600-01
Chr12	irgsp1_rep	CDS	351512	351659	.	+	2	Parent=Os12t0106600-01
Chr12	irgsp1_rep	CDS	351734	351905	.	+	1	Parent=Os12t0106600-01
Chr12	irgsp1_rep	CDS	352527	352662	.	+	0	Parent=Os12t0106600-01
Chr12	irgsp1_rep	CDS	353110	353206	.	+	2	Parent=Os12t0106600-01
Chr12	irgsp1_rep	CDS	353344	353444	.	+	1	Parent=Os12t0106600-01
Chr12	irgsp1_rep	CDS	353658	353821	.	+	2	Parent=Os12t0106600-01
Chr12	irgsp1_rep	CDS	353903	353972	.	+	0	Parent=Os12t0106600-01
Chr12	irgsp1_rep	CDS	354070	354188	.	+	2	Parent=Os12t0106600-01
Chr12	irgsp1_rep	CDS	354274	354369	.	+	0	Parent=Os12t0106600-01
Chr12	irgsp1_rep	CDS	354461	354582	.	+	0	Parent=Os12t0106600-01
Chr12	irgsp1_rep	CDS	354667	354718	.	+	1	Parent=Os12t0106600-01
Chr12	irgsp1_rep	three_prime_UTR	354719	355072	.	+	.	Parent=Os12t0106600-01
Chr12	irgsp1_rep	mRNA	355612	358919	.	-	.	ID=Os12t0106700-01;Name=Os12t0106700-01;Locus_id=Os12g0106700;Note=Conserved hypothetical protein.;Transcript_evidence=AK106509 (DDBJ%2C Best hit);ORF_evidence=A3CE78 (UniProt);NIAS_FLcDNA=002-105-G12;TENOR=Os12t0106700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	358569	358919	.	-	.	Parent=Os12t0106700-01
Chr12	irgsp1_rep	CDS	358266	358568	.	-	0	Parent=Os12t0106700-01
Chr12	irgsp1_rep	CDS	356847	356927	.	-	0	Parent=Os12t0106700-01
Chr12	irgsp1_rep	CDS	356602	356776	.	-	0	Parent=Os12t0106700-01
Chr12	irgsp1_rep	CDS	355825	356504	.	-	2	Parent=Os12t0106700-01
Chr12	irgsp1_rep	three_prime_UTR	355612	355824	.	-	.	Parent=Os12t0106700-01
Chr12	irgsp1_rep	mRNA	358957	359214	.	-	.	ID=Os12t0106801-00;Name=Os12t0106801-00;Locus_id=Os12g0106801;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os12t0106801-00;KEGG=Os12t0106801-00
Chr12	irgsp1_rep	CDS	358957	359214	.	-	0	Parent=Os12t0106801-00
Chr12	irgsp1_rep	mRNA	374664	379320	.	-	.	ID=Os12t0106900-01;Name=Os12t0106900-01;Locus_id=Os12g0106900;Note=Hemopexin domain containing protein.;Transcript_evidence=AK102466 (DDBJ%2C Best hit),AK059925 (DDBJ%2C Best hit),AK099240 (DDBJ%2C Best hit);ORF_evidence=A3CE79 (UniProt);InterPro=Protein of unknown function DUF3615 (IPR022059);NIAS_FLcDNA=J033094E18,006-209-H11,J013115L04;TENOR=Os12t0106900-01
Chr12	irgsp1_rep	five_prime_UTR	379047	379320	.	-	.	Parent=Os12t0106900-01
Chr12	irgsp1_rep	five_prime_UTR	376893	376929	.	-	.	Parent=Os12t0106900-01
Chr12	irgsp1_rep	CDS	376705	376892	.	-	0	Parent=Os12t0106900-01
Chr12	irgsp1_rep	CDS	375698	375764	.	-	1	Parent=Os12t0106900-01
Chr12	irgsp1_rep	CDS	375298	375580	.	-	0	Parent=Os12t0106900-01
Chr12	irgsp1_rep	CDS	374974	375188	.	-	2	Parent=Os12t0106900-01
Chr12	irgsp1_rep	three_prime_UTR	374664	374973	.	-	.	Parent=Os12t0106900-01
Chr12	irgsp1_rep	mRNA	374666	376851	.	-	.	ID=Os12t0106900-02;Name=Os12t0106900-02;Locus_id=Os12g0106900;Note=Hypothetical conserved gene.;Transcript_evidence=AK099547 (DDBJ%2C Best hit);ORF_evidence=A3CE79 (UniProt);InterPro=Protein of unknown function DUF3615 (IPR022059);NIAS_FLcDNA=J013033C16;Expression=AK099547;TENOR=Os12t0106900-02;KEGG=Os12t0106900-02
Chr12	irgsp1_rep	five_prime_UTR	376851	376851	.	-	.	Parent=Os12t0106900-02
Chr12	irgsp1_rep	CDS	376705	376850	.	-	0	Parent=Os12t0106900-02
Chr12	irgsp1_rep	CDS	375698	375764	.	-	1	Parent=Os12t0106900-02
Chr12	irgsp1_rep	CDS	375298	375580	.	-	0	Parent=Os12t0106900-02
Chr12	irgsp1_rep	CDS	374974	375188	.	-	2	Parent=Os12t0106900-02
Chr12	irgsp1_rep	three_prime_UTR	374666	374973	.	-	.	Parent=Os12t0106900-02
Chr12	irgsp1_rep	mRNA	405050	407165	.	+	.	ID=Os12t0107300-01;Name=Os12t0107300-01;Locus_id=Os12g0107300;Note=Conserved hypothetical protein.;Transcript_evidence=AK073771 (DDBJ%2C Best hit);ORF_evidence=NP_001061479.2 (RefSeq);NIAS_FLcDNA=J033066K15;TENOR=Os12t0107300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	405050	405058	.	+	.	Parent=Os12t0107300-01
Chr12	irgsp1_rep	CDS	405059	405256	.	+	0	Parent=Os12t0107300-01
Chr12	irgsp1_rep	three_prime_UTR	405257	407165	.	+	.	Parent=Os12t0107300-01
Chr12	irgsp1_rep	mRNA	411252	413224	.	+	.	ID=Os12t0107500-01;Name=Os12t0107500-01;Locus_id=Os12g0107500;Note=Similar to Macrophage migration inhibitory factor.;Transcript_evidence=AK240887 (DDBJ%2C Best hit);ORF_evidence=B4FX16 (UniProt);InterPro=Macrophage migration inhibitory factor (IPR001398),Tautomerase (IPR014347);NIAS_FLcDNA=J065029G04;TENOR=Os12t0107500-01;KEGG=Os12t0107500-01 (EC:5.3.2.1)
Chr12	irgsp1_rep	five_prime_UTR	411252	411348	.	+	.	Parent=Os12t0107500-01
Chr12	irgsp1_rep	CDS	411349	411459	.	+	0	Parent=Os12t0107500-01
Chr12	irgsp1_rep	CDS	412289	412489	.	+	0	Parent=Os12t0107500-01
Chr12	irgsp1_rep	CDS	412787	412822	.	+	0	Parent=Os12t0107500-01
Chr12	irgsp1_rep	three_prime_UTR	412823	413224	.	+	.	Parent=Os12t0107500-01
Chr12	irgsp1_rep	mRNA	414959	415621	.	+	.	ID=Os12t0107600-00;Name=Os12t0107600-00;Locus_id=Os12g0107600;Note=Prenylated rab acceptor PRA1 family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2RBL4 (UniProt);InterPro=Prenylated rab acceptor PRA1 (IPR004895);TENOR=Os12t0107600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	414959	415621	.	+	0	Parent=Os12t0107600-00
Chr12	irgsp1_rep	mRNA	418594	421581	.	+	.	ID=Os12t0107700-00;Name=Os12t0107700-00;Locus_id=Os12g0107700;Note=Similar to Leucine Rich Repeat family protein%2C expressed.;Transcript_evidence=AK073061 (DDBJ%2C Secondary hit);ORF_evidence=Q2QYS6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os12t0107700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	418594	418594	.	+	.	Parent=Os12t0107700-00
Chr12	irgsp1_rep	CDS	418595	420068	.	+	0	Parent=Os12t0107700-00
Chr12	irgsp1_rep	CDS	420667	421307	.	+	2	Parent=Os12t0107700-00
Chr12	irgsp1_rep	three_prime_UTR	421308	421581	.	+	.	Parent=Os12t0107700-00
Chr12	irgsp1_rep	mRNA	420658	421298	.	-	.	ID=Os12t0107733-00;Name=Os12t0107733-00;Locus_id=Os12g0107733;Note=Hypothetical gene.;Transcript_evidence=EU948331 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0107733-00
Chr12	irgsp1_rep	five_prime_UTR	421278	421298	.	-	.	Parent=Os12t0107733-00
Chr12	irgsp1_rep	CDS	420658	421277	.	-	0	Parent=Os12t0107733-00
Chr12	irgsp1_rep	mRNA	434076	438615	.	+	.	ID=Os12t0108000-01;Name=Os12t0108000-01;Locus_id=Os12g0108000;CGSNL Gene Symbol=LAC27;CGSNL Gene Name=LACCASE 27;Oryzabase Gene Symbol Synonym(s)=OsLAC27;Oryzabase Gene Name Synonym(s)=laccase 27;Note=Similar to Laccase (Diphenol oxidase).;Transcript_evidence=AK109523 (DDBJ%2C Best hit);ORF_evidence=Q2QYS3 (UniProt);GO=Biological Process: lignin catabolic process (GO:0046274),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: apoplast (GO:0048046),Molecular Function: copper ion binding (GO:0005507),Molecular Function: laccase activity (GO:0008471),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Multicopper oxidase%2C type 1 (IPR001117),Multicopper oxidase%2C copper-binding site (IPR002355),Cupredoxin (IPR008972),Multicopper oxidase%2C type 2 (IPR011706),Multicopper oxidase%2C type 3 (IPR011707),Laccase (IPR017761);NIAS_FLcDNA=002-115-F06;Oryzabase=18562;Expression=AK109523;TENOR=Os12t0108000-01;KEGG=Os12t0108000-01
Chr12	irgsp1_rep	five_prime_UTR	434076	434202	.	+	.	Parent=Os12t0108000-01
Chr12	irgsp1_rep	CDS	434203	434292	.	+	0	Parent=Os12t0108000-01
Chr12	irgsp1_rep	CDS	434409	434811	.	+	0	Parent=Os12t0108000-01
Chr12	irgsp1_rep	CDS	437263	438473	.	+	2	Parent=Os12t0108000-01
Chr12	irgsp1_rep	three_prime_UTR	438474	438615	.	+	.	Parent=Os12t0108000-01
Chr12	irgsp1_rep	mRNA	439128	443649	.	-	.	ID=Os12t0108100-01;Name=Os12t0108100-01;Locus_id=Os12g0108100;Note=Similar to Ser Thr specific protein kinase-like protein.;Transcript_evidence=AK073774 (DDBJ%2C Best hit);ORF_evidence=Q2RBK1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033068C19;Expression=AK073774;TENOR=Os12t0108100-01;KEGG=Os12t0108100-01
Chr12	irgsp1_rep	five_prime_UTR	443372	443649	.	-	.	Parent=Os12t0108100-01
Chr12	irgsp1_rep	five_prime_UTR	443178	443245	.	-	.	Parent=Os12t0108100-01
Chr12	irgsp1_rep	five_prime_UTR	442970	443087	.	-	.	Parent=Os12t0108100-01
Chr12	irgsp1_rep	five_prime_UTR	442315	442332	.	-	.	Parent=Os12t0108100-01
Chr12	irgsp1_rep	CDS	441656	442314	.	-	0	Parent=Os12t0108100-01
Chr12	irgsp1_rep	CDS	441439	441543	.	-	1	Parent=Os12t0108100-01
Chr12	irgsp1_rep	CDS	441233	441355	.	-	1	Parent=Os12t0108100-01
Chr12	irgsp1_rep	CDS	440672	440842	.	-	1	Parent=Os12t0108100-01
Chr12	irgsp1_rep	CDS	440401	440530	.	-	1	Parent=Os12t0108100-01
Chr12	irgsp1_rep	CDS	440038	440247	.	-	0	Parent=Os12t0108100-01
Chr12	irgsp1_rep	CDS	439527	439670	.	-	0	Parent=Os12t0108100-01
Chr12	irgsp1_rep	three_prime_UTR	439128	439526	.	-	.	Parent=Os12t0108100-01
Chr12	irgsp1_rep	mRNA	449500	452360	.	+	.	ID=Os12t0108200-01;Name=Os12t0108200-01;Locus_id=Os12g0108200;Note=Hypothetical conserved gene.;Transcript_evidence=AK289195 (DDBJ%2C Best hit);ORF_evidence=NP_001176752.1 (RefSeq);NIAS_FLcDNA=J100045M07;TENOR=Os12t0108200-01;KEGG=Os12t0108200-01
Chr12	irgsp1_rep	five_prime_UTR	449500	449659	.	+	.	Parent=Os12t0108200-01
Chr12	irgsp1_rep	CDS	449660	449935	.	+	0	Parent=Os12t0108200-01
Chr12	irgsp1_rep	three_prime_UTR	449936	450112	.	+	.	Parent=Os12t0108200-01
Chr12	irgsp1_rep	three_prime_UTR	450204	450267	.	+	.	Parent=Os12t0108200-01
Chr12	irgsp1_rep	three_prime_UTR	450335	450423	.	+	.	Parent=Os12t0108200-01
Chr12	irgsp1_rep	three_prime_UTR	450688	450786	.	+	.	Parent=Os12t0108200-01
Chr12	irgsp1_rep	three_prime_UTR	451176	451382	.	+	.	Parent=Os12t0108200-01
Chr12	irgsp1_rep	three_prime_UTR	451788	451899	.	+	.	Parent=Os12t0108200-01
Chr12	irgsp1_rep	three_prime_UTR	451980	452360	.	+	.	Parent=Os12t0108200-01
Chr12	irgsp1_rep	mRNA	456609	460374	.	+	.	ID=Os12t0108350-00;Name=Os12t0108350-00;Locus_id=Os12g0108350;Note=Similar to Zinc finger%2C C3HC4 type family protein.;Transcript_evidence=AK334648 (DDBJ);ORF_evidence=Q2QYS1 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os12t0108350-00
Chr12	irgsp1_rep	CDS	456609	456895	.	+	0	Parent=Os12t0108350-00
Chr12	irgsp1_rep	CDS	457247	457552	.	+	1	Parent=Os12t0108350-00
Chr12	irgsp1_rep	CDS	459444	460374	.	+	1	Parent=Os12t0108350-00
Chr12	irgsp1_rep	mRNA	464682	468347	.	+	.	ID=Os12t0108500-01;Name=Os12t0108500-01;Locus_id=Os12g0108500;Oryzabase Gene Symbol Synonym(s)=OsFbox636%2C Fbox636%2C Os_F0774;Oryzabase Gene Name Synonym(s)=F-box protein 636;Note=Similar to Leucine Rich Repeat family protein%2C expressed.;Transcript_evidence=AK122171 (DDBJ%2C Best hit);ORF_evidence=Q2RBJ7 (UniProt);InterPro=Leucine-rich repeat%2C cysteine-containing subtype (IPR006553);NIAS_FLcDNA=J033148F16;Oryzabase=17397;TENOR=Os12t0108500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	464682	464682	.	+	.	Parent=Os12t0108500-01
Chr12	irgsp1_rep	CDS	464683	465414	.	+	0	Parent=Os12t0108500-01
Chr12	irgsp1_rep	CDS	465896	466024	.	+	0	Parent=Os12t0108500-01
Chr12	irgsp1_rep	CDS	466336	466440	.	+	0	Parent=Os12t0108500-01
Chr12	irgsp1_rep	CDS	466524	467047	.	+	0	Parent=Os12t0108500-01
Chr12	irgsp1_rep	CDS	467128	467422	.	+	1	Parent=Os12t0108500-01
Chr12	irgsp1_rep	CDS	467505	467753	.	+	0	Parent=Os12t0108500-01
Chr12	irgsp1_rep	CDS	467920	467979	.	+	0	Parent=Os12t0108500-01
Chr12	irgsp1_rep	three_prime_UTR	467980	468347	.	+	.	Parent=Os12t0108500-01
Chr12	irgsp1_rep	mRNA	464739	467755	.	-	.	ID=Os12t0108550-00;Name=Os12t0108550-00;Locus_id=Os12g0108550;Note=Hypothetical protein.;Transcript_evidence=tplb0046f21 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0108550-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	467500	467755	.	-	.	Parent=Os12t0108550-00
Chr12	irgsp1_rep	five_prime_UTR	467125	467413	.	-	.	Parent=Os12t0108550-00
Chr12	irgsp1_rep	five_prime_UTR	466510	467044	.	-	.	Parent=Os12t0108550-00
Chr12	irgsp1_rep	five_prime_UTR	466328	466430	.	-	.	Parent=Os12t0108550-00
Chr12	irgsp1_rep	five_prime_UTR	465895	466018	.	-	.	Parent=Os12t0108550-00
Chr12	irgsp1_rep	five_prime_UTR	465349	465413	.	-	.	Parent=Os12t0108550-00
Chr12	irgsp1_rep	CDS	464739	465348	.	-	0	Parent=Os12t0108550-00
Chr12	irgsp1_rep	mRNA	469350	472294	.	+	.	ID=Os12t0108600-00;Name=Os12t0108600-00;Locus_id=Os12g0108600;Oryzabase Gene Symbol Synonym(s)=OsPP123;Oryzabase Gene Name Synonym(s)=Protein phosphatase 123;Note=Protein phosphatase 2C-like domain containing protein.;Transcript_evidence=AK063260 (DDBJ%2C Secondary hit);ORF_evidence=NP_001065952.2 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);Oryzabase=18660;TENOR=Os12t0108600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	469350	469401	.	+	.	Parent=Os12t0108600-00
Chr12	irgsp1_rep	five_prime_UTR	469409	469429	.	+	.	Parent=Os12t0108600-00
Chr12	irgsp1_rep	CDS	469430	469506	.	+	0	Parent=Os12t0108600-00
Chr12	irgsp1_rep	CDS	469521	469707	.	+	1	Parent=Os12t0108600-00
Chr12	irgsp1_rep	CDS	470445	470786	.	+	0	Parent=Os12t0108600-00
Chr12	irgsp1_rep	CDS	471023	471140	.	+	0	Parent=Os12t0108600-00
Chr12	irgsp1_rep	CDS	471221	471444	.	+	2	Parent=Os12t0108600-00
Chr12	irgsp1_rep	CDS	471703	472122	.	+	0	Parent=Os12t0108600-00
Chr12	irgsp1_rep	three_prime_UTR	472123	472294	.	+	.	Parent=Os12t0108600-00
Chr12	irgsp1_rep	mRNA	483967	487137	.	+	.	ID=Os12t0108900-00;Name=Os12t0108900-00;Locus_id=Os12g0108900;CGSNL Gene Symbol=DRM1B;CGSNL Gene Name=DOMAINS REARRANGED METHYLTRANSFERASE 1B;Oryzabase Gene Symbol Synonym(s)=OsDRM1b;Oryzabase Gene Name Synonym(s)=domains rearranged methyltransferase 1b%2C domains rearranged methylase 1b;Note=Similar to DRM-type DNA-methyltransferase.;Transcript_evidence=AK365109 (DDBJ);ORF_evidence=B4XTT0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=UBA-like (IPR009060),Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal%2C eukaryote (IPR015940);Oryzabase=10398;TENOR=Os12t0108900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	483967	484086	.	+	.	Parent=Os12t0108900-00
Chr12	irgsp1_rep	five_prime_UTR	484153	484304	.	+	.	Parent=Os12t0108900-00
Chr12	irgsp1_rep	five_prime_UTR	484446	484502	.	+	.	Parent=Os12t0108900-00
Chr12	irgsp1_rep	CDS	484503	484604	.	+	0	Parent=Os12t0108900-00
Chr12	irgsp1_rep	CDS	485601	485700	.	+	0	Parent=Os12t0108900-00
Chr12	irgsp1_rep	CDS	485775	485866	.	+	2	Parent=Os12t0108900-00
Chr12	irgsp1_rep	CDS	485962	486738	.	+	0	Parent=Os12t0108900-00
Chr12	irgsp1_rep	three_prime_UTR	486739	487137	.	+	.	Parent=Os12t0108900-00
Chr12	irgsp1_rep	mRNA	483967	487137	.	-	.	ID=Os12t0108933-00;Name=Os12t0108933-00;Locus_id=Os12g0108933;Note=Hypothetical protein.;Transcript_evidence=tplb0027a09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0108933-00
Chr12	irgsp1_rep	five_prime_UTR	486911	487137	.	-	.	Parent=Os12t0108933-00
Chr12	irgsp1_rep	CDS	486662	486910	.	-	0	Parent=Os12t0108933-00
Chr12	irgsp1_rep	three_prime_UTR	485967	486661	.	-	.	Parent=Os12t0108933-00
Chr12	irgsp1_rep	three_prime_UTR	485773	485876	.	-	.	Parent=Os12t0108933-00
Chr12	irgsp1_rep	three_prime_UTR	485611	485698	.	-	.	Parent=Os12t0108933-00
Chr12	irgsp1_rep	three_prime_UTR	484436	484616	.	-	.	Parent=Os12t0108933-00
Chr12	irgsp1_rep	three_prime_UTR	484148	484282	.	-	.	Parent=Os12t0108933-00
Chr12	irgsp1_rep	three_prime_UTR	483967	484090	.	-	.	Parent=Os12t0108933-00
Chr12	irgsp1_rep	mRNA	487661	488227	.	+	.	ID=Os12t0108966-00;Name=Os12t0108966-00;Locus_id=Os12g0108966;Note=Conserved hypothetical protein.;Transcript_evidence=FP093915 (DDBJ);ORF_evidence=A3C7U9 (UniProt);TENOR=Os12t0108966-00
Chr12	irgsp1_rep	five_prime_UTR	487661	487806	.	+	.	Parent=Os12t0108966-00
Chr12	irgsp1_rep	CDS	487807	487890	.	+	0	Parent=Os12t0108966-00
Chr12	irgsp1_rep	three_prime_UTR	487891	488227	.	+	.	Parent=Os12t0108966-00
Chr12	irgsp1_rep	mRNA	489117	489606	.	-	.	ID=Os12t0109000-00;Name=Os12t0109000-00;Locus_id=Os12g0109000;Note=Similar to Mannose-1-phosphate guanyltransferase.;Transcript_evidence=ab initio prediction;ORF_evidence=B6TBA0 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=Nucleotidyl transferase (IPR005835);TENOR=Os12t0109000-00;KEGG=Os12t0109000-00 (EC:2.7.7.13)
Chr12	irgsp1_rep	CDS	489549	489606	.	-	0	Parent=Os12t0109000-00
Chr12	irgsp1_rep	CDS	489324	489421	.	-	2	Parent=Os12t0109000-00
Chr12	irgsp1_rep	CDS	489117	489233	.	-	0	Parent=Os12t0109000-00
Chr12	irgsp1_rep	mRNA	492047	493207	.	+	.	ID=Os12t0109150-00;Name=Os12t0109150-00;Locus_id=Os12g0109150;CGSNL Gene Symbol=CHX6;CGSNL Gene Name=CATION/H+ EXCHANGER  6;Oryzabase Gene Symbol Synonym(s)=OsCHX06%2C CHX06%2C OsCHX6;Oryzabase Gene Name Synonym(s)=cation/H+ exchanger  6;Note=Similar to Sodium/hydrogen exchanger family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QYR3 (UniProt);Oryzabase=22366;TENOR=Os12t0109150-00;KEGG=Os12t0109150-00
Chr12	irgsp1_rep	CDS	492047	493207	.	+	0	Parent=Os12t0109150-00
Chr12	irgsp1_rep	mRNA	494933	499308	.	+	.	ID=Os12t0109200-01;Name=Os12t0109200-01;Locus_id=Os12g0109200;Note=Similar to Ca(2+)-dependent nuclease.;Transcript_evidence=AK103380 (DDBJ%2C Best hit);ORF_evidence=B8BNU8 (UniProt);NIAS_FLcDNA=J033127E15;Expression=AK103380;TENOR=Os12t0109200-01;KEGG=Os12t0109200-01
Chr12	irgsp1_rep	five_prime_UTR	494933	494955	.	+	.	Parent=Os12t0109200-01
Chr12	irgsp1_rep	CDS	494956	495186	.	+	0	Parent=Os12t0109200-01
Chr12	irgsp1_rep	CDS	495869	495924	.	+	0	Parent=Os12t0109200-01
Chr12	irgsp1_rep	CDS	497101	497200	.	+	1	Parent=Os12t0109200-01
Chr12	irgsp1_rep	three_prime_UTR	497201	497211	.	+	.	Parent=Os12t0109200-01
Chr12	irgsp1_rep	three_prime_UTR	497344	497531	.	+	.	Parent=Os12t0109200-01
Chr12	irgsp1_rep	three_prime_UTR	497971	498027	.	+	.	Parent=Os12t0109200-01
Chr12	irgsp1_rep	three_prime_UTR	498123	498282	.	+	.	Parent=Os12t0109200-01
Chr12	irgsp1_rep	three_prime_UTR	498389	498457	.	+	.	Parent=Os12t0109200-01
Chr12	irgsp1_rep	three_prime_UTR	498972	499308	.	+	.	Parent=Os12t0109200-01
Chr12	irgsp1_rep	mRNA	499852	502261	.	-	.	ID=Os12t0109300-01;Name=Os12t0109300-01;Locus_id=Os12g0109300;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK103426 (DDBJ%2C Best hit);ORF_evidence=Q2QYR0 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033128L01;TENOR=Os12t0109300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	500291	502261	.	-	0	Parent=Os12t0109300-01
Chr12	irgsp1_rep	three_prime_UTR	499852	500290	.	-	.	Parent=Os12t0109300-01
Chr12	irgsp1_rep	mRNA	500283	502222	.	+	.	ID=Os12t0109375-00;Name=Os12t0109375-00;Locus_id=Os12g0109375;Note=Hypothetical protein.;Transcript_evidence=tplb0021n11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0109375-00
Chr12	irgsp1_rep	five_prime_UTR	500283	500659	.	+	.	Parent=Os12t0109375-00
Chr12	irgsp1_rep	CDS	500660	501022	.	+	0	Parent=Os12t0109375-00
Chr12	irgsp1_rep	three_prime_UTR	501023	501659	.	+	.	Parent=Os12t0109375-00
Chr12	irgsp1_rep	three_prime_UTR	501781	502222	.	+	.	Parent=Os12t0109375-00
Chr12	irgsp1_rep	mRNA	515426	517055	.	+	.	ID=Os12t0109600-01;Name=Os12t0109600-01;Locus_id=Os12g0109600;Note=Protein of unknown function DUF1677%2C Oryza sativa family protein.;Transcript_evidence=AK107606 (DDBJ%2C Best hit);ORF_evidence=B9GBG9 (UniProt);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);NIAS_FLcDNA=002-131-B11;Expression=AK107606;TENOR=Os12t0109600-01;KEGG=Os12t0109600-01
Chr12	irgsp1_rep	five_prime_UTR	515426	515797	.	+	.	Parent=Os12t0109600-01
Chr12	irgsp1_rep	CDS	515798	516967	.	+	0	Parent=Os12t0109600-01
Chr12	irgsp1_rep	three_prime_UTR	516968	517055	.	+	.	Parent=Os12t0109600-01
Chr12	irgsp1_rep	mRNA	521291	522682	.	-	.	ID=Os12t0109633-00;Name=Os12t0109633-00;Locus_id=Os12g0109633;Note=Hypothetical conserved gene.;Transcript_evidence=EU955714 (DDBJ);ORF_evidence=A3CE98 (UniProt);InterPro=Protein of unknown function DUF2985 (IPR021369);TENOR=Os12t0109633-00;KEGG=Os12t0109633-00
Chr12	irgsp1_rep	CDS	521291	522682	.	-	0	Parent=Os12t0109633-00
Chr12	irgsp1_rep	mRNA	524065	526185	.	-	.	ID=Os12t0109700-01;Name=Os12t0109700-01;Locus_id=Os12g0109700;Note=Protein of unknown function DUF2985 domain containing protein.;Transcript_evidence=AK058609 (DDBJ%2C Best hit);ORF_evidence=Q2QYQ5 (UniProt);InterPro=Protein of unknown function DUF2985 (IPR021369);NIAS_FLcDNA=001-018-A07;TENOR=Os12t0109700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	526091	526185	.	-	.	Parent=Os12t0109700-01
Chr12	irgsp1_rep	CDS	525506	526090	.	-	0	Parent=Os12t0109700-01
Chr12	irgsp1_rep	CDS	524700	524927	.	-	0	Parent=Os12t0109700-01
Chr12	irgsp1_rep	three_prime_UTR	524065	524699	.	-	.	Parent=Os12t0109700-01
Chr12	irgsp1_rep	mRNA	524533	525909	.	+	.	ID=Os12t0109750-00;Name=Os12t0109750-00;Locus_id=Os12g0109750;Note=Hypothetical gene.;Transcript_evidence=AK361165 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0109750-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	524533	524939	.	+	.	Parent=Os12t0109750-00
Chr12	irgsp1_rep	CDS	524940	525470	.	+	0	Parent=Os12t0109750-00
Chr12	irgsp1_rep	three_prime_UTR	525471	525909	.	+	.	Parent=Os12t0109750-00
Chr12	irgsp1_rep	mRNA	531057	533421	.	+	.	ID=Os12t0109800-00;Name=Os12t0109800-00;Locus_id=Os12g0109800;CGSNL Gene Symbol=RLCK358;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 358;Oryzabase Gene Symbol Synonym(s)=OsRLCK358;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 358;Note=Hypothetical conserved gene.;Transcript_evidence=BT066437 (DDBJ);ORF_evidence=B8BNV5 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);Oryzabase=19028;TENOR=Os12t0109800-00;KEGG=Os12t0109800-00
Chr12	irgsp1_rep	CDS	531057	533420	.	+	0	Parent=Os12t0109800-00
Chr12	irgsp1_rep	three_prime_UTR	533421	533421	.	+	.	Parent=Os12t0109800-00
Chr12	irgsp1_rep	mRNA	533882	535127	.	+	.	ID=Os12t0109850-00;Name=Os12t0109850-00;Locus_id=Os12g0109850;CGSNL Gene Symbol=RLCK358;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 358;Oryzabase Gene Symbol Synonym(s)=OsRLCK358;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 358;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2RBK1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009);Oryzabase=19028;TENOR=Os12t0109850-00;KEGG=Os12t0109850-00
Chr12	irgsp1_rep	CDS	533882	533964	.	+	0	Parent=Os12t0109850-00
Chr12	irgsp1_rep	CDS	534123	534213	.	+	1	Parent=Os12t0109850-00
Chr12	irgsp1_rep	CDS	534398	534607	.	+	0	Parent=Os12t0109850-00
Chr12	irgsp1_rep	CDS	534984	535127	.	+	0	Parent=Os12t0109850-00
Chr12	irgsp1_rep	mRNA	535944	540335	.	-	.	ID=Os12t0109900-01;Name=Os12t0109900-01;Locus_id=Os12g0109900;Oryzabase Gene Symbol Synonym(s)=OsRBP%2C OsDRB1b%2C DRB1b;Oryzabase Gene Name Synonym(s)=dsRNA binding protein RBP%2C RNA binding protein%2C dsRNA-binding protein 1b;Note=Double-stranded RNA-binding-like domain containing protein.;Transcript_evidence=AK103543 (DDBJ%2C Best hit);ORF_evidence=Q0IV63 (UniProt);GO=Biological Process: rRNA catabolic process (GO:0016075),Cellular Component: intracellular (GO:0005622),Molecular Function: RNA binding (GO:0003723),Molecular Function: double-stranded RNA binding (GO:0003725),Molecular Function: ribonuclease III activity (GO:0004525);InterPro=Double-stranded RNA-binding (IPR001159),Ribonuclease III%2C bacterial (IPR011907),Double-stranded RNA-binding-like (IPR014720);NIAS_FLcDNA=J033132D17;Oryzabase=15778;Expression=AK103543;TENOR=Os12t0109900-01;KEGG=Os12t0109900-01
Chr12	irgsp1_rep	five_prime_UTR	540280	540335	.	-	.	Parent=Os12t0109900-01
Chr12	irgsp1_rep	CDS	540201	540279	.	-	0	Parent=Os12t0109900-01
Chr12	irgsp1_rep	CDS	539601	539860	.	-	2	Parent=Os12t0109900-01
Chr12	irgsp1_rep	CDS	537226	537439	.	-	0	Parent=Os12t0109900-01
Chr12	irgsp1_rep	CDS	536364	537085	.	-	2	Parent=Os12t0109900-01
Chr12	irgsp1_rep	three_prime_UTR	535944	536363	.	-	.	Parent=Os12t0109900-01
Chr12	irgsp1_rep	mRNA	537602	540332	.	-	.	ID=Os12t0109900-02;Name=Os12t0109900-02;Locus_id=Os12g0109900;Oryzabase Gene Symbol Synonym(s)=OsRBP%2C OsDRB1b%2C DRB1b;Oryzabase Gene Name Synonym(s)=dsRNA binding protein RBP%2C RNA binding protein%2C dsRNA-binding protein 1b;Note=Similar to DsRNA-binding protein ODB1.;Transcript_evidence=AK063972 (DDBJ%2C Best hit);ORF_evidence=Q0IQN6 (UniProt);GO=Biological Process: rRNA catabolic process (GO:0016075),Cellular Component: intracellular (GO:0005622),Molecular Function: RNA binding (GO:0003723),Molecular Function: double-stranded RNA binding (GO:0003725),Molecular Function: ribonuclease III activity (GO:0004525);InterPro=Double-stranded RNA-binding (IPR001159),Pentatricopeptide repeat (IPR002885),Ribonuclease III%2C bacterial (IPR011907),Double-stranded RNA-binding-like (IPR014720);NIAS_FLcDNA=001-124-B06;Oryzabase=15778;Expression=AK063972;TENOR=Os12t0109900-02;KEGG=Os12t0109900-02
Chr12	irgsp1_rep	five_prime_UTR	540280	540332	.	-	.	Parent=Os12t0109900-02
Chr12	irgsp1_rep	CDS	540201	540279	.	-	0	Parent=Os12t0109900-02
Chr12	irgsp1_rep	CDS	539601	539860	.	-	2	Parent=Os12t0109900-02
Chr12	irgsp1_rep	CDS	538924	538981	.	-	0	Parent=Os12t0109900-02
Chr12	irgsp1_rep	CDS	537914	538905	.	-	2	Parent=Os12t0109900-02
Chr12	irgsp1_rep	three_prime_UTR	537602	537913	.	-	.	Parent=Os12t0109900-02
Chr12	irgsp1_rep	mRNA	540597	550863	.	-	.	ID=Os12t0110000-01;Name=Os12t0110000-01;Locus_id=Os12g0110000;RAP-DB Gene Name Synonym(s)=OsRaptor 2%2C Raptor 2;CGSNL Gene Symbol=RAPTOR2;CGSNL Gene Name=REGULATORY ASSOCIATED PROTEIN OF TOR 2;Oryzabase Gene Symbol Synonym(s)=OsRaptor 2%2C Raptor 2;Oryzabase Gene Name Synonym(s)=Regulatory associated protein of TOR 2;Note=Component of TORC1(Target of rapamycin complex 1);Transcript_evidence=XM_015764591;ORF_evidence=Q0IQN5;GO=Biological Process: TOR signaling (GO:0031929),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515),Cellular Component: TORC1 complex (GO:0031931);InterPro=Regulatory associated protein of TOR (IPR004083),Raptor%2C N-terminal CASPase-like domain (IPR029347),Armadillo-type fold (IPR016024),Armadillo-like helical (IPR011989),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat (IPR001680);Manual Curation=July 28%2C 2016;Literature_PMID=25956502,27102613;Oryzabase=19883;TENOR=Os12t0110000-00
Chr12	irgsp1_rep	five_prime_UTR	550496	550863	.	-	.	Parent=Os12t0110000-01
Chr12	irgsp1_rep	CDS	550184	550495	.	-	0	Parent=Os12t0110000-01
Chr12	irgsp1_rep	CDS	548525	548627	.	-	0	Parent=Os12t0110000-01
Chr12	irgsp1_rep	CDS	547857	547939	.	-	2	Parent=Os12t0110000-01
Chr12	irgsp1_rep	CDS	547622	547780	.	-	0	Parent=Os12t0110000-01
Chr12	irgsp1_rep	CDS	547412	547528	.	-	0	Parent=Os12t0110000-01
Chr12	irgsp1_rep	CDS	547122	547279	.	-	0	Parent=Os12t0110000-01
Chr12	irgsp1_rep	CDS	546871	547025	.	-	1	Parent=Os12t0110000-01
Chr12	irgsp1_rep	CDS	546629	546773	.	-	2	Parent=Os12t0110000-01
Chr12	irgsp1_rep	CDS	546468	546546	.	-	1	Parent=Os12t0110000-01
Chr12	irgsp1_rep	CDS	546234	546335	.	-	0	Parent=Os12t0110000-01
Chr12	irgsp1_rep	CDS	545811	545894	.	-	0	Parent=Os12t0110000-01
Chr12	irgsp1_rep	CDS	545597	545707	.	-	0	Parent=Os12t0110000-01
Chr12	irgsp1_rep	CDS	545147	545500	.	-	0	Parent=Os12t0110000-01
Chr12	irgsp1_rep	CDS	544887	545067	.	-	0	Parent=Os12t0110000-01
Chr12	irgsp1_rep	CDS	544163	544774	.	-	2	Parent=Os12t0110000-01
Chr12	irgsp1_rep	CDS	543717	544043	.	-	2	Parent=Os12t0110000-01
Chr12	irgsp1_rep	CDS	543484	543604	.	-	2	Parent=Os12t0110000-01
Chr12	irgsp1_rep	CDS	543262	543386	.	-	1	Parent=Os12t0110000-01
Chr12	irgsp1_rep	CDS	543041	543180	.	-	2	Parent=Os12t0110000-01
Chr12	irgsp1_rep	CDS	542843	542941	.	-	0	Parent=Os12t0110000-01
Chr12	irgsp1_rep	CDS	542683	542768	.	-	0	Parent=Os12t0110000-01
Chr12	irgsp1_rep	CDS	542447	542531	.	-	1	Parent=Os12t0110000-01
Chr12	irgsp1_rep	CDS	541969	542310	.	-	0	Parent=Os12t0110000-01
Chr12	irgsp1_rep	three_prime_UTR	540597	541968	.	-	.	Parent=Os12t0110000-01
Chr12	irgsp1_rep	mRNA	555086	558636	.	-	.	ID=Os12t0110100-01;Name=Os12t0110100-01;Locus_id=Os12g0110100;Note=Esterase/lipase/thioesterase domain containing protein.;Transcript_evidence=AK067362 (DDBJ%2C Best hit);ORF_evidence=NP_850428.1 (RefSeq);NIAS_FLcDNA=J013102P17;Expression=AK067362;TENOR=Os12t0110100-01;KEGG=Os12t0110100-01
Chr12	irgsp1_rep	five_prime_UTR	558364	558636	.	-	.	Parent=Os12t0110100-01
Chr12	irgsp1_rep	five_prime_UTR	558060	558070	.	-	.	Parent=Os12t0110100-01
Chr12	irgsp1_rep	CDS	557991	558059	.	-	0	Parent=Os12t0110100-01
Chr12	irgsp1_rep	CDS	557738	557876	.	-	0	Parent=Os12t0110100-01
Chr12	irgsp1_rep	CDS	557428	557626	.	-	2	Parent=Os12t0110100-01
Chr12	irgsp1_rep	CDS	556892	557020	.	-	1	Parent=Os12t0110100-01
Chr12	irgsp1_rep	CDS	556589	556639	.	-	1	Parent=Os12t0110100-01
Chr12	irgsp1_rep	CDS	556412	556508	.	-	1	Parent=Os12t0110100-01
Chr12	irgsp1_rep	CDS	556046	556333	.	-	0	Parent=Os12t0110100-01
Chr12	irgsp1_rep	CDS	555476	555958	.	-	0	Parent=Os12t0110100-01
Chr12	irgsp1_rep	three_prime_UTR	555086	555475	.	-	.	Parent=Os12t0110100-01
Chr12	irgsp1_rep	mRNA	555355	556338	.	+	.	ID=Os12t0110150-00;Name=Os12t0110150-00;Locus_id=Os12g0110150;Note=Hypothetical gene.;Transcript_evidence=EU949682 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0110150-00;KEGG=Os12t0110150-00
Chr12	irgsp1_rep	five_prime_UTR	555355	555814	.	+	.	Parent=Os12t0110150-00
Chr12	irgsp1_rep	CDS	555815	556060	.	+	0	Parent=Os12t0110150-00
Chr12	irgsp1_rep	three_prime_UTR	556061	556338	.	+	.	Parent=Os12t0110150-00
Chr12	irgsp1_rep	mRNA	558251	559929	.	+	.	ID=Os12t0110200-01;Name=Os12t0110200-01;Locus_id=Os12g0110200;Note=Hypothetical protein.;Transcript_evidence=AK105537 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-127-H05;Expression=AK105537;TENOR=Os12t0110200-01;KEGG=Os12t0110200-01
Chr12	irgsp1_rep	five_prime_UTR	558251	558390	.	+	.	Parent=Os12t0110200-01
Chr12	irgsp1_rep	CDS	558391	558819	.	+	0	Parent=Os12t0110200-01
Chr12	irgsp1_rep	three_prime_UTR	558820	559929	.	+	.	Parent=Os12t0110200-01
Chr12	irgsp1_rep	mRNA	559283	562829	.	-	.	ID=Os12t0110300-01;Name=Os12t0110300-01;Locus_id=Os12g0110300;Note=Similar to cDNA%2C clone: J065191E12%2C full insert sequence.;Transcript_evidence=AK058945 (DDBJ%2C Best hit);ORF_evidence=B7F8Y2 (UniProt);NIAS_FLcDNA=001-009-H10;Expression=AK058945;TENOR=Os12t0110300-01;KEGG=Os12t0110300-01
Chr12	irgsp1_rep	five_prime_UTR	562748	562829	.	-	.	Parent=Os12t0110300-01
Chr12	irgsp1_rep	CDS	562633	562747	.	-	0	Parent=Os12t0110300-01
Chr12	irgsp1_rep	CDS	562446	562535	.	-	2	Parent=Os12t0110300-01
Chr12	irgsp1_rep	CDS	561788	561882	.	-	2	Parent=Os12t0110300-01
Chr12	irgsp1_rep	CDS	561413	561484	.	-	0	Parent=Os12t0110300-01
Chr12	irgsp1_rep	CDS	561116	561157	.	-	0	Parent=Os12t0110300-01
Chr12	irgsp1_rep	CDS	560570	560718	.	-	0	Parent=Os12t0110300-01
Chr12	irgsp1_rep	CDS	560366	560484	.	-	1	Parent=Os12t0110300-01
Chr12	irgsp1_rep	CDS	559914	559998	.	-	2	Parent=Os12t0110300-01
Chr12	irgsp1_rep	CDS	559765	559835	.	-	1	Parent=Os12t0110300-01
Chr12	irgsp1_rep	CDS	559521	559675	.	-	2	Parent=Os12t0110300-01
Chr12	irgsp1_rep	three_prime_UTR	559283	559520	.	-	.	Parent=Os12t0110300-01
Chr12	irgsp1_rep	mRNA	562988	565691	.	+	.	ID=Os12t0110400-01;Name=Os12t0110400-01;Locus_id=Os12g0110400;Note=Similar to PTAC6 (PLASTID TRANSCRIPTIONALLY ACTIVE6).;Transcript_evidence=AK102323 (DDBJ%2C Best hit);ORF_evidence=NP_564144.1 (RefSeq);NIAS_FLcDNA=J033090J12;Expression=AK102323;TENOR=Os12t0110400-01;KEGG=Os12t0110400-01
Chr12	irgsp1_rep	five_prime_UTR	562988	563117	.	+	.	Parent=Os12t0110400-01
Chr12	irgsp1_rep	CDS	563118	563459	.	+	0	Parent=Os12t0110400-01
Chr12	irgsp1_rep	CDS	563656	563724	.	+	0	Parent=Os12t0110400-01
Chr12	irgsp1_rep	CDS	563819	563923	.	+	0	Parent=Os12t0110400-01
Chr12	irgsp1_rep	CDS	564624	564743	.	+	0	Parent=Os12t0110400-01
Chr12	irgsp1_rep	CDS	565085	565174	.	+	0	Parent=Os12t0110400-01
Chr12	irgsp1_rep	CDS	565259	565375	.	+	0	Parent=Os12t0110400-01
Chr12	irgsp1_rep	three_prime_UTR	565376	565691	.	+	.	Parent=Os12t0110400-01
Chr12	irgsp1_rep	mRNA	566351	567783	.	-	.	ID=Os12t0110475-01;Name=Os12t0110475-01;Locus_id=Os12g0110475;Note=Conserved hypothetical protein.;Transcript_evidence=AK240800 (DDBJ%2C Best hit);ORF_evidence=NP_001176757.1 (RefSeq);NIAS_FLcDNA=J065002J06;TENOR=Os12t0110475-01;KEGG=Os12t0110475-01
Chr12	irgsp1_rep	five_prime_UTR	566952	567783	.	-	.	Parent=Os12t0110475-01
Chr12	irgsp1_rep	CDS	566523	566951	.	-	0	Parent=Os12t0110475-01
Chr12	irgsp1_rep	three_prime_UTR	566351	566522	.	-	.	Parent=Os12t0110475-01
Chr12	irgsp1_rep	mRNA	577960	579230	.	-	.	ID=Os12t0110700-00;Name=Os12t0110700-00;Locus_id=Os12g0110700;Note=Conserved hypothetical protein.;Transcript_evidence=BT067382 (DDBJ);ORF_evidence=NP_001046339.1 (RefSeq);TENOR=Os12t0110700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	579095	579230	.	-	.	Parent=Os12t0110700-00
Chr12	irgsp1_rep	CDS	578983	579094	.	-	0	Parent=Os12t0110700-00
Chr12	irgsp1_rep	CDS	577960	578789	.	-	2	Parent=Os12t0110700-00
Chr12	irgsp1_rep	mRNA	582853	583396	.	+	.	ID=Os12t0110951-01;Name=Os12t0110951-01;Locus_id=Os12g0110951;Note=Hypothetical gene.;Transcript_evidence=AK288366 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090025K01;TENOR=Os12t0110951-01;KEGG=Os12t0110951-01
Chr12	irgsp1_rep	five_prime_UTR	582853	582900	.	+	.	Parent=Os12t0110951-01
Chr12	irgsp1_rep	CDS	582901	583152	.	+	0	Parent=Os12t0110951-01
Chr12	irgsp1_rep	three_prime_UTR	583153	583396	.	+	.	Parent=Os12t0110951-01
Chr12	irgsp1_rep	mRNA	583887	585609	.	+	.	ID=Os12t0111000-01;Name=Os12t0111000-01;Locus_id=Os12g0111000;Note=Conserved hypothetical protein.;Transcript_evidence=AK064603 (DDBJ%2C Best hit);ORF_evidence=Q2QYP4 (UniProt);NIAS_FLcDNA=002-112-H12;TENOR=Os12t0111000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	583887	584438	.	+	.	Parent=Os12t0111000-01
Chr12	irgsp1_rep	CDS	584439	585404	.	+	0	Parent=Os12t0111000-01
Chr12	irgsp1_rep	three_prime_UTR	585405	585609	.	+	.	Parent=Os12t0111000-01
Chr12	irgsp1_rep	mRNA	599639	602697	.	+	.	ID=Os12t0111400-01;Name=Os12t0111400-01;Locus_id=Os12g0111400;Oryzabase Gene Symbol Synonym(s)=OsbHLH161;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 161;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=AK062951 (DDBJ%2C Best hit);ORF_evidence=A3CEA5 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=001-109-C08;Oryzabase=15432;Expression=AK062951;TENOR=Os12t0111400-01;KEGG=Os12t0111400-01
Chr12	irgsp1_rep	five_prime_UTR	599639	599703	.	+	.	Parent=Os12t0111400-01
Chr12	irgsp1_rep	CDS	599704	599784	.	+	0	Parent=Os12t0111400-01
Chr12	irgsp1_rep	CDS	600161	600277	.	+	0	Parent=Os12t0111400-01
Chr12	irgsp1_rep	CDS	602376	602468	.	+	0	Parent=Os12t0111400-01
Chr12	irgsp1_rep	three_prime_UTR	602469	602697	.	+	.	Parent=Os12t0111400-01
Chr12	irgsp1_rep	mRNA	602666	604502	.	-	.	ID=Os12t0111500-02;Name=Os12t0111500-02;Locus_id=Os12g0111500;Note=BTB domain containing protein.;Transcript_evidence=AK061388 (DDBJ%2C Best hit),AK104550 (DDBJ%2C Best hit);ORF_evidence=B8Q8A5 (UniProt);NIAS_FLcDNA=006-305-B10,006-305-E01;Expression=AK061388;TENOR=Os12t0111500-02;KEGG=Os12t0111500-02
Chr12	irgsp1_rep	five_prime_UTR	604399	604502	.	-	.	Parent=Os12t0111500-02
Chr12	irgsp1_rep	CDS	604210	604398	.	-	0	Parent=Os12t0111500-02
Chr12	irgsp1_rep	CDS	603353	603529	.	-	0	Parent=Os12t0111500-02
Chr12	irgsp1_rep	CDS	602796	603257	.	-	0	Parent=Os12t0111500-02
Chr12	irgsp1_rep	three_prime_UTR	602666	602795	.	-	.	Parent=Os12t0111500-02
Chr12	irgsp1_rep	mRNA	607455	608215	.	-	.	ID=Os12t0111600-01;Name=Os12t0111600-01;Locus_id=Os12g0111600;Oryzabase Gene Symbol Synonym(s)=OsHIGD5%2C HIGD5;Oryzabase Gene Name Synonym(s)=Hypoxia-Induced Gene Domain 5%2C Hypoxia-Induced Gene Domain Protein 5;Note=Hypoxia induced protein conserved region family protein.;Transcript_evidence=AK119685 (DDBJ%2C Best hit),AK120264 (DDBJ%2C Best hit);ORF_evidence=Q2RBG7 (UniProt);InterPro=Hypoxia induced protein%2C domain (IPR007667);NIAS_FLcDNA=002-157-A04,J013047D01;Oryzabase=21341;Expression=AK119685;TENOR=Os12t0111600-01;KEGG=Os12t0111600-01
Chr12	irgsp1_rep	five_prime_UTR	608134	608215	.	-	.	Parent=Os12t0111600-01
Chr12	irgsp1_rep	CDS	608073	608133	.	-	0	Parent=Os12t0111600-01
Chr12	irgsp1_rep	CDS	607723	607979	.	-	2	Parent=Os12t0111600-01
Chr12	irgsp1_rep	three_prime_UTR	607455	607722	.	-	.	Parent=Os12t0111600-01
Chr12	irgsp1_rep	mRNA	610219	612177	.	+	.	ID=Os12t0111700-00;Name=Os12t0111700-00;Locus_id=Os12g0111700;Note=Conserved hypothetical protein.;Transcript_evidence=AK363915 (DDBJ);ORF_evidence=B9GBH8 (UniProt);Oryzabase=20464;TENOR=Os12t0111700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	610219	610253	.	+	.	Parent=Os12t0111700-00
Chr12	irgsp1_rep	CDS	610254	610500	.	+	0	Parent=Os12t0111700-00
Chr12	irgsp1_rep	CDS	610579	610732	.	+	2	Parent=Os12t0111700-00
Chr12	irgsp1_rep	CDS	611374	611421	.	+	1	Parent=Os12t0111700-00
Chr12	irgsp1_rep	CDS	611939	612161	.	+	1	Parent=Os12t0111700-00
Chr12	irgsp1_rep	three_prime_UTR	612162	612177	.	+	.	Parent=Os12t0111700-00
Chr12	irgsp1_rep	mRNA	614019	614803	.	-	.	ID=Os12t0111750-00;Name=Os12t0111750-00;Locus_id=Os12g0111750;Note=Hypothetical protein.;Transcript_evidence=FP097913 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0111750-00
Chr12	irgsp1_rep	five_prime_UTR	614769	614803	.	-	.	Parent=Os12t0111750-00
Chr12	irgsp1_rep	CDS	614581	614768	.	-	0	Parent=Os12t0111750-00
Chr12	irgsp1_rep	CDS	614032	614155	.	-	1	Parent=Os12t0111750-00
Chr12	irgsp1_rep	three_prime_UTR	614019	614031	.	-	.	Parent=Os12t0111750-00
Chr12	irgsp1_rep	mRNA	614314	616031	.	+	.	ID=Os12t0111800-00;Name=Os12t0111800-00;Locus_id=Os12g0111800;Note=Similar to Class III peroxidase 136.;Transcript_evidence=CT831381 (DDBJ%2C Secondary hit);ORF_evidence=Q5U1F7 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);TENOR=Os12t0111800-00;KEGG=Os12t0111800-00
Chr12	irgsp1_rep	five_prime_UTR	614314	614315	.	+	.	Parent=Os12t0111800-00
Chr12	irgsp1_rep	CDS	614316	614525	.	+	0	Parent=Os12t0111800-00
Chr12	irgsp1_rep	CDS	614611	614802	.	+	0	Parent=Os12t0111800-00
Chr12	irgsp1_rep	CDS	615067	615232	.	+	0	Parent=Os12t0111800-00
Chr12	irgsp1_rep	CDS	615460	615845	.	+	2	Parent=Os12t0111800-00
Chr12	irgsp1_rep	three_prime_UTR	615846	616031	.	+	.	Parent=Os12t0111800-00
Chr12	irgsp1_rep	mRNA	617081	617614	.	-	.	ID=Os12t0111900-00;Name=Os12t0111900-00;Locus_id=Os12g0111900;Note=GCN5-like 1 domain containing protein.;Transcript_evidence=AK333592 (DDBJ);ORF_evidence=NP_001176758.1 (RefSeq);InterPro=GCN5-like 1 (IPR009395);TENOR=Os12t0111900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	617524	617614	.	-	0	Parent=Os12t0111900-00
Chr12	irgsp1_rep	CDS	617081	617391	.	-	2	Parent=Os12t0111900-00
Chr12	irgsp1_rep	mRNA	623582	626113	.	+	.	ID=Os12t0112000-01;Name=Os12t0112000-01;Locus_id=Os12g0112000;CGSNL Gene Symbol=POX;CGSNL Gene Name=PEROXIDASE;Oryzabase Gene Symbol Synonym(s)=Pox%2C prx135%2C OsPRX1;Oryzabase Gene Name Synonym(s)=Peroxidase%2C class III peroxidase 135;Note=Similar to Peroxidase precursor (EC 1.11.1.7) (Fragment).;Transcript_evidence=AK069456 (DDBJ%2C Best hit);ORF_evidence=Q5U1G3 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793),Peroxidase%2C active site (IPR019794);NIAS_FLcDNA=J023019E08;Oryzabase=12543;Expression=AK069456;TENOR=Os12t0112000-01;KEGG=Os12t0112000-01 (EC:1.11.1.7)
Chr12	irgsp1_rep	five_prime_UTR	623582	623703	.	+	.	Parent=Os12t0112000-01
Chr12	irgsp1_rep	CDS	623704	623937	.	+	0	Parent=Os12t0112000-01
Chr12	irgsp1_rep	CDS	624022	624213	.	+	0	Parent=Os12t0112000-01
Chr12	irgsp1_rep	CDS	624285	624450	.	+	0	Parent=Os12t0112000-01
Chr12	irgsp1_rep	CDS	625510	625901	.	+	2	Parent=Os12t0112000-01
Chr12	irgsp1_rep	three_prime_UTR	625902	626113	.	+	.	Parent=Os12t0112000-01
Chr12	irgsp1_rep	mRNA	628418	630963	.	+	.	ID=Os12t0112200-01;Name=Os12t0112200-01;Locus_id=Os12g0112200;Note=Saposin-like domain containing protein.;Transcript_evidence=AK242541 (DDBJ%2C Best hit);ORF_evidence=NP_001148899.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629);InterPro=Saposin-like type B%2C 1 (IPR007856),Saposin-like type B%2C 2 (IPR008138),Saposin B (IPR008139),Saposin-like (IPR011001);NIAS_FLcDNA=J080318C07;TENOR=Os12t0112200-01;KEGG=Os12t0112200-01
Chr12	irgsp1_rep	five_prime_UTR	628418	628523	.	+	.	Parent=Os12t0112200-01
Chr12	irgsp1_rep	five_prime_UTR	628772	628795	.	+	.	Parent=Os12t0112200-01
Chr12	irgsp1_rep	CDS	628796	628877	.	+	0	Parent=Os12t0112200-01
Chr12	irgsp1_rep	CDS	629706	629944	.	+	2	Parent=Os12t0112200-01
Chr12	irgsp1_rep	CDS	630129	630326	.	+	0	Parent=Os12t0112200-01
Chr12	irgsp1_rep	CDS	630415	630474	.	+	0	Parent=Os12t0112200-01
Chr12	irgsp1_rep	CDS	630596	630754	.	+	0	Parent=Os12t0112200-01
Chr12	irgsp1_rep	three_prime_UTR	630755	630963	.	+	.	Parent=Os12t0112200-01
Chr12	irgsp1_rep	mRNA	632446	632866	.	-	.	ID=Os12t0112251-00;Name=Os12t0112251-00;Locus_id=Os12g0112251;Note=Hypothetical gene.;Transcript_evidence=EU968274 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0112251-00;KEGG=Os12t0112251-00
Chr12	irgsp1_rep	five_prime_UTR	632852	632866	.	-	.	Parent=Os12t0112251-00
Chr12	irgsp1_rep	CDS	632715	632851	.	-	0	Parent=Os12t0112251-00
Chr12	irgsp1_rep	CDS	632540	632654	.	-	1	Parent=Os12t0112251-00
Chr12	irgsp1_rep	three_prime_UTR	632446	632539	.	-	.	Parent=Os12t0112251-00
Chr12	irgsp1_rep	mRNA	632454	638030	.	+	.	ID=Os12t0112300-01;Name=Os12t0112300-01;Locus_id=Os12g0112300;Note=ADP/ATP carrier protein domain containing protein.;Transcript_evidence=AK068723 (DDBJ%2C Best hit);ORF_evidence=B8BIP9 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: integral to membrane (GO:0016021),Molecular Function: ATP:ADP antiporter activity (GO:0005471),Molecular Function: ATP binding (GO:0005524);InterPro=ADP/ATP carrier protein (IPR004667),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J013158K12;Expression=AK068723;TENOR=Os12t0112300-01;KEGG=Os12t0112300-01
Chr12	irgsp1_rep	five_prime_UTR	632454	632488	.	+	.	Parent=Os12t0112300-01
Chr12	irgsp1_rep	CDS	632489	632605	.	+	0	Parent=Os12t0112300-01
Chr12	irgsp1_rep	CDS	632700	632864	.	+	0	Parent=Os12t0112300-01
Chr12	irgsp1_rep	CDS	633636	633734	.	+	0	Parent=Os12t0112300-01
Chr12	irgsp1_rep	CDS	633941	634027	.	+	0	Parent=Os12t0112300-01
Chr12	irgsp1_rep	CDS	634114	634182	.	+	0	Parent=Os12t0112300-01
Chr12	irgsp1_rep	CDS	634274	634370	.	+	0	Parent=Os12t0112300-01
Chr12	irgsp1_rep	CDS	634456	634558	.	+	2	Parent=Os12t0112300-01
Chr12	irgsp1_rep	CDS	634869	635085	.	+	1	Parent=Os12t0112300-01
Chr12	irgsp1_rep	CDS	635215	635328	.	+	0	Parent=Os12t0112300-01
Chr12	irgsp1_rep	CDS	636021	636152	.	+	0	Parent=Os12t0112300-01
Chr12	irgsp1_rep	CDS	636446	636526	.	+	0	Parent=Os12t0112300-01
Chr12	irgsp1_rep	CDS	637284	637400	.	+	0	Parent=Os12t0112300-01
Chr12	irgsp1_rep	CDS	637497	637598	.	+	0	Parent=Os12t0112300-01
Chr12	irgsp1_rep	three_prime_UTR	637599	638030	.	+	.	Parent=Os12t0112300-01
Chr12	irgsp1_rep	mRNA	635178	635902	.	-	.	ID=Os12t0112350-01;Name=Os12t0112350-01;Locus_id=Os12g0112350;Note=Non-protein coding transcript.;Transcript_evidence=AK288387 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090027D05;TENOR=Os12t0112350-01
Chr12	irgsp1_rep	exon	635178	635902	.	-	.	Parent=Os12t0112350-01
Chr12	irgsp1_rep	mRNA	638380	639712	.	+	.	ID=Os12t0112401-00;Name=Os12t0112401-00;Locus_id=Os12g0112401;CGSNL Gene Symbol=HYPRP44;CGSNL Gene Name=HYBRID PROLINE-RICH PROTEIN 44;Oryzabase Gene Symbol Synonym(s)=OsHyPRP44%2C HyPRP44;Oryzabase Gene Name Synonym(s)=Hybrid Proline-Rich Protein 44;Note=Similar to RNA-binding protein 12.;Transcript_evidence=CT835544 (DDBJ%2C Best hit);ORF_evidence=NP_001149579.1 (RefSeq);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);Oryzabase=23420;TENOR=Os12t0112401-00;KEGG=Os12t0112401-00
Chr12	irgsp1_rep	five_prime_UTR	638380	638485	.	+	.	Parent=Os12t0112401-00
Chr12	irgsp1_rep	CDS	638486	639161	.	+	0	Parent=Os12t0112401-00
Chr12	irgsp1_rep	CDS	639276	639338	.	+	2	Parent=Os12t0112401-00
Chr12	irgsp1_rep	CDS	639446	639459	.	+	2	Parent=Os12t0112401-00
Chr12	irgsp1_rep	three_prime_UTR	639460	639712	.	+	.	Parent=Os12t0112401-00
Chr12	irgsp1_rep	mRNA	639913	646681	.	-	.	ID=Os12t0112500-01;Name=Os12t0112500-01;Locus_id=Os12g0112500;Oryzabase Gene Symbol Synonym(s)=OsPP124;Oryzabase Gene Name Synonym(s)=Protein phosphatase 124;Note=Protein-tyrosine phosphatase%2C dual specificity domain containing protein.;Transcript_evidence=AK242672 (DDBJ%2C Best hit);ORF_evidence=Q2QYN1 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Biological Process: dephosphorylation (GO:0016311),Molecular Function: protein tyrosine/serine/threonine phosphatase activity (GO:0008138),Molecular Function: phosphatase activity (GO:0016791);InterPro=Dual specificity phosphatase%2C catalytic domain (IPR000340),Protein-tyrosine/Dual-specificity phosphatase (IPR000387),Dual specificity phosphatase%2C subgroup%2C catalytic domain (IPR020422);NIAS_FLcDNA=J090030M10;Oryzabase=18661;TENOR=Os12t0112500-01;KEGG=Os12t0112500-01
Chr12	irgsp1_rep	five_prime_UTR	646556	646681	.	-	.	Parent=Os12t0112500-01
Chr12	irgsp1_rep	five_prime_UTR	644839	644909	.	-	.	Parent=Os12t0112500-01
Chr12	irgsp1_rep	five_prime_UTR	643339	643506	.	-	.	Parent=Os12t0112500-01
Chr12	irgsp1_rep	CDS	643104	643338	.	-	0	Parent=Os12t0112500-01
Chr12	irgsp1_rep	CDS	641392	641597	.	-	2	Parent=Os12t0112500-01
Chr12	irgsp1_rep	CDS	640706	640876	.	-	0	Parent=Os12t0112500-01
Chr12	irgsp1_rep	CDS	640421	640624	.	-	0	Parent=Os12t0112500-01
Chr12	irgsp1_rep	three_prime_UTR	639913	640420	.	-	.	Parent=Os12t0112500-01
Chr12	irgsp1_rep	mRNA	645370	651356	.	+	.	ID=Os12t0112600-01;Name=Os12t0112600-01;Locus_id=Os12g0112600;Note=ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C nucleotide-binding domain containing protein.;Transcript_evidence=AK068644 (DDBJ%2C Best hit);ORF_evidence=B8BP09 (UniProt);NIAS_FLcDNA=J013158J09;Expression=AK068644;TENOR=Os12t0112600-01;KEGG=Os12t0112600-01
Chr12	irgsp1_rep	five_prime_UTR	645370	645705	.	+	.	Parent=Os12t0112600-01
Chr12	irgsp1_rep	CDS	645706	647061	.	+	0	Parent=Os12t0112600-01
Chr12	irgsp1_rep	CDS	647193	648118	.	+	0	Parent=Os12t0112600-01
Chr12	irgsp1_rep	CDS	650790	650928	.	+	1	Parent=Os12t0112600-01
Chr12	irgsp1_rep	three_prime_UTR	650929	651356	.	+	.	Parent=Os12t0112600-01
Chr12	irgsp1_rep	mRNA	656498	659155	.	+	.	ID=Os12t0112800-00;Name=Os12t0112800-00;Locus_id=Os12g0112800;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001065976.2 (RefSeq);TENOR=Os12t0112800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	656498	656659	.	+	0	Parent=Os12t0112800-00
Chr12	irgsp1_rep	CDS	658039	658146	.	+	0	Parent=Os12t0112800-00
Chr12	irgsp1_rep	CDS	658552	658621	.	+	0	Parent=Os12t0112800-00
Chr12	irgsp1_rep	CDS	659097	659155	.	+	2	Parent=Os12t0112800-00
Chr12	irgsp1_rep	mRNA	660557	661163	.	-	.	ID=Os12t0113001-00;Name=Os12t0113001-00;Locus_id=Os12g0113001;Note=Conserved hypothetical protein.;Transcript_evidence=CT835540 (DDBJ%2C Best hit);ORF_evidence=NP_001063374.1 (RefSeq);TENOR=Os12t0113001-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	660870	661163	.	-	.	Parent=Os12t0113001-00
Chr12	irgsp1_rep	five_prime_UTR	660747	660862	.	-	.	Parent=Os12t0113001-00
Chr12	irgsp1_rep	CDS	660684	660746	.	-	0	Parent=Os12t0113001-00
Chr12	irgsp1_rep	three_prime_UTR	660557	660683	.	-	.	Parent=Os12t0113001-00
Chr12	irgsp1_rep	mRNA	679079	682143	.	-	.	ID=Os12t0113500-01;Name=Os12t0113500-01;Locus_id=Os12g0113500;CGSNL Gene Symbol=CIPK14;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 14;Oryzabase Gene Symbol Synonym(s)=OsCIPK14;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 14;Note=Similar to CBL-interacting protein kinase 14.;Transcript_evidence=AK242733 (DDBJ%2C Best hit),AK243050 (DDBJ%2C Best hit);ORF_evidence=Q2QYM3 (UniProt);NIAS_FLcDNA=J090047O22,J100011E04;Oryzabase=7401;TENOR=Os12t0113500-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	681986	682143	.	-	.	Parent=Os12t0113500-01
Chr12	irgsp1_rep	five_prime_UTR	680644	680948	.	-	.	Parent=Os12t0113500-01
Chr12	irgsp1_rep	CDS	679324	680643	.	-	0	Parent=Os12t0113500-01
Chr12	irgsp1_rep	three_prime_UTR	679079	679323	.	-	.	Parent=Os12t0113500-01
Chr12	irgsp1_rep	mRNA	679079	680950	.	-	.	ID=Os12t0113500-02;Name=Os12t0113500-02;Locus_id=Os12g0113500;RAP-DB Gene Symbol Synonym(s)=CIPK14%2C OsCIPK14;RAP-DB Gene Name Synonym(s)=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 14%2C Oryza sativa calcineurin B-like (CBL) protein-interacting protein kinase 14%2C CBL-interacting protein kinase 14;CGSNL Gene Symbol=CIPK14;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 14;Oryzabase Gene Symbol Synonym(s)=OsCIPK14;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 14;Note=Serine/threonine protein kinase%2C Microbe-assosiated molecular pattern (MAMP)-induced defense signaling pathway;Transcript_evidence=AB264036 (DDBJ);ORF_evidence=Q2QYM3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Kinase-associated KA1 (IPR001772),Serine/threonine- / dual-specificity protein kinase%2C catalytic  domain (IPR002290),NAF domain (IPR004041),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),NAF/FISL domain (IPR018451);Manual Curation=July 12%2C 2010;Literature_PMID=17535819,20357140;Oryzabase=7401;TENOR=Os12t0113500-02;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	680644	680950	.	-	.	Parent=Os12t0113500-02
Chr12	irgsp1_rep	CDS	679324	680643	.	-	0	Parent=Os12t0113500-02
Chr12	irgsp1_rep	three_prime_UTR	679079	679323	.	-	.	Parent=Os12t0113500-02
Chr12	irgsp1_rep	mRNA	688955	689479	.	+	.	ID=Os12t0113550-01;Name=Os12t0113550-01;Locus_id=Os12g0113550;Note=Non-protein coding transcript.;Transcript_evidence=AK241692 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065195J09;TENOR=Os12t0113550-01
Chr12	irgsp1_rep	exon	688955	689479	.	+	.	Parent=Os12t0113550-01
Chr12	irgsp1_rep	mRNA	690006	691172	.	+	.	ID=Os12t0113600-01;Name=Os12t0113600-01;Locus_id=Os12g0113600;Note=Hypothetical protein.;Transcript_evidence=AK107809 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-133-E11;Expression=AK107809;TENOR=Os12t0113600-01;KEGG=Os12t0113600-01
Chr12	irgsp1_rep	five_prime_UTR	690006	690381	.	+	.	Parent=Os12t0113600-01
Chr12	irgsp1_rep	five_prime_UTR	690696	690708	.	+	.	Parent=Os12t0113600-01
Chr12	irgsp1_rep	CDS	690709	691026	.	+	0	Parent=Os12t0113600-01
Chr12	irgsp1_rep	three_prime_UTR	691027	691172	.	+	.	Parent=Os12t0113600-01
Chr12	irgsp1_rep	mRNA	690489	695233	.	-	.	ID=Os12t0113700-00;Name=Os12t0113700-00;Locus_id=Os12g0113700;Note=Similar to Zinc finger%2C C3HC4 type family protein%2C expressed.;Transcript_evidence=EU955940 (DDBJ);ORF_evidence=Q2QYM2 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os12t0113700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	694986	695233	.	-	.	Parent=Os12t0113700-00
Chr12	irgsp1_rep	CDS	694960	694985	.	-	0	Parent=Os12t0113700-00
Chr12	irgsp1_rep	CDS	690489	690861	.	-	1	Parent=Os12t0113700-00
Chr12	irgsp1_rep	mRNA	691573	695267	.	+	.	ID=Os12t0113800-00;Name=Os12t0113800-00;Locus_id=Os12g0113800;Note=Similar to Zinc finger%2C C3HC4 type family protein.;Transcript_evidence=AK355027 (DDBJ);ORF_evidence=Q2QYM1 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os12t0113800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	691573	691936	.	+	0	Parent=Os12t0113800-00
Chr12	irgsp1_rep	CDS	695062	695267	.	+	2	Parent=Os12t0113800-00
Chr12	irgsp1_rep	mRNA	692719	694583	.	+	.	ID=Os12t0113900-01;Name=Os12t0113900-01;Locus_id=Os12g0113900;Note=Inorganic pyrophosphatase domain containing protein.;Transcript_evidence=AK121827 (DDBJ%2C Best hit);ORF_evidence=A2ZHE4 (UniProt);InterPro=Domain of unknown function DUF641%2C plant (IPR006943);NIAS_FLcDNA=J033099G18;Expression=AK121827;TENOR=Os12t0113900-01;KEGG=Os12t0113900-01
Chr12	irgsp1_rep	five_prime_UTR	692719	692874	.	+	.	Parent=Os12t0113900-01
Chr12	irgsp1_rep	five_prime_UTR	693175	693179	.	+	.	Parent=Os12t0113900-01
Chr12	irgsp1_rep	CDS	693180	694451	.	+	0	Parent=Os12t0113900-01
Chr12	irgsp1_rep	three_prime_UTR	694452	694583	.	+	.	Parent=Os12t0113900-01
Chr12	irgsp1_rep	mRNA	696645	697460	.	+	.	ID=Os12t0114000-01;Name=Os12t0114000-01;Locus_id=Os12g0114000;Note=Conserved hypothetical protein.;Transcript_evidence=AK063119 (DDBJ%2C Best hit);ORF_evidence=B9G915 (UniProt);NIAS_FLcDNA=001-111-E05;TENOR=Os12t0114000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	696645	696878	.	+	.	Parent=Os12t0114000-01
Chr12	irgsp1_rep	CDS	696879	697244	.	+	0	Parent=Os12t0114000-01
Chr12	irgsp1_rep	three_prime_UTR	697245	697460	.	+	.	Parent=Os12t0114000-01
Chr12	irgsp1_rep	mRNA	699019	705122	.	-	.	ID=Os12t0114100-01;Name=Os12t0114100-01;Locus_id=Os12g0114100;CGSNL Gene Symbol=WNK8;CGSNL Gene Name=WITH NO LYSINE KINASE 8;Oryzabase Gene Symbol Synonym(s)=OsWNK8;Oryzabase Gene Name Synonym(s)=With No Lysine kinase 8%2C WNK protein kinase 8%2C WNK kinase 8;Note=Similar to MAP kinase-like protein.;Transcript_evidence=AK067447 (DDBJ%2C Best hit);ORF_evidence=Q84XZ4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013107M03;Oryzabase=20443;Expression=AK067447;TENOR=Os12t0114100-01;KEGG=Os12t0114100-01 (EC:2.7.11.1)
Chr12	irgsp1_rep	five_prime_UTR	704149	705122	.	-	.	Parent=Os12t0114100-01
Chr12	irgsp1_rep	CDS	704041	704148	.	-	0	Parent=Os12t0114100-01
Chr12	irgsp1_rep	CDS	700514	701819	.	-	0	Parent=Os12t0114100-01
Chr12	irgsp1_rep	CDS	699169	699614	.	-	2	Parent=Os12t0114100-01
Chr12	irgsp1_rep	three_prime_UTR	699019	699168	.	-	.	Parent=Os12t0114100-01
Chr12	irgsp1_rep	mRNA	698969	704359	.	-	.	ID=Os12t0114100-02;Name=Os12t0114100-02;Locus_id=Os12g0114100;CGSNL Gene Symbol=WNK8;CGSNL Gene Name=WITH NO LYSINE KINASE 8;Oryzabase Gene Symbol Synonym(s)=OsWNK8;Oryzabase Gene Name Synonym(s)=With No Lysine kinase 8%2C WNK protein kinase 8%2C WNK kinase 8;Note=Similar to MAP kinase-like protein.;Transcript_evidence=AK072172 (DDBJ%2C Best hit);ORF_evidence=B7EDH7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013129I24;Oryzabase=20443;Expression=AK072172;TENOR=Os12t0114100-02;KEGG=Os12t0114100-02 (EC:2.7.11.1)
Chr12	irgsp1_rep	five_prime_UTR	704149	704359	.	-	.	Parent=Os12t0114100-02
Chr12	irgsp1_rep	CDS	704041	704148	.	-	0	Parent=Os12t0114100-02
Chr12	irgsp1_rep	CDS	700514	701819	.	-	0	Parent=Os12t0114100-02
Chr12	irgsp1_rep	CDS	699169	699614	.	-	2	Parent=Os12t0114100-02
Chr12	irgsp1_rep	three_prime_UTR	698969	699168	.	-	.	Parent=Os12t0114100-02
Chr12	irgsp1_rep	mRNA	707630	712835	.	-	.	ID=Os12t0114200-01;Name=Os12t0114200-01;Locus_id=Os12g0114200;CGSNL Gene Symbol=NTP12;CGSNL Gene Name=NUCLEOTIDYL TRANSFERASE PROTEIN 12;Oryzabase Gene Symbol Synonym(s)=OsNTP12;Oryzabase Gene Name Synonym(s)=nucleotidyl transferase protein 12;Note=Hypothetical conserved gene.;Transcript_evidence=AK242978 (DDBJ%2C Best hit);ORF_evidence=B9GBI3 (UniProt);InterPro=PAP/25A-associated (IPR002058);NIAS_FLcDNA=J090093C10;Oryzabase=21894;TENOR=Os12t0114200-01;KEGG=Os12t0114200-01
Chr12	irgsp1_rep	CDS	712650	712835	.	-	0	Parent=Os12t0114200-01
Chr12	irgsp1_rep	CDS	712072	712164	.	-	0	Parent=Os12t0114200-01
Chr12	irgsp1_rep	CDS	711701	711883	.	-	0	Parent=Os12t0114200-01
Chr12	irgsp1_rep	CDS	711502	711604	.	-	0	Parent=Os12t0114200-01
Chr12	irgsp1_rep	CDS	711223	711408	.	-	2	Parent=Os12t0114200-01
Chr12	irgsp1_rep	CDS	709663	710621	.	-	2	Parent=Os12t0114200-01
Chr12	irgsp1_rep	CDS	708626	709050	.	-	0	Parent=Os12t0114200-01
Chr12	irgsp1_rep	CDS	708260	708317	.	-	1	Parent=Os12t0114200-01
Chr12	irgsp1_rep	three_prime_UTR	707630	708259	.	-	.	Parent=Os12t0114200-01
Chr12	irgsp1_rep	mRNA	718564	722185	.	+	.	ID=Os12t0114400-01;Name=Os12t0114400-01;Locus_id=Os12g0114400;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK070552 (DDBJ%2C Best hit);ORF_evidence=Q2QYL5 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J023062N08;Expression=AK070552;TENOR=Os12t0114400-01;KEGG=Os12t0114400-01
Chr12	irgsp1_rep	five_prime_UTR	718564	718565	.	+	.	Parent=Os12t0114400-01
Chr12	irgsp1_rep	CDS	718566	720080	.	+	0	Parent=Os12t0114400-01
Chr12	irgsp1_rep	three_prime_UTR	720081	720686	.	+	.	Parent=Os12t0114400-01
Chr12	irgsp1_rep	three_prime_UTR	720781	721533	.	+	.	Parent=Os12t0114400-01
Chr12	irgsp1_rep	three_prime_UTR	721650	722185	.	+	.	Parent=Os12t0114400-01
Chr12	irgsp1_rep	mRNA	723297	724220	.	+	.	ID=Os12t0114500-01;Name=Os12t0114500-01;Locus_id=Os12g0114500;Oryzabase Gene Symbol Synonym(s)=OsLTP1.15%2C OsLtpI.15;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein 1.15%2C lipid transfer protein 1.15%2C type 1 non-specific lipid transfer protein 15;Note=Similar to Nonspecific lipid-transfer protein (LTP) (Fragment).;Transcript_evidence=AK073466 (DDBJ%2C Best hit),AK104981 (DDBJ%2C Best hit);ORF_evidence=A2ZHE8 (UniProt);GO=Biological Process: lipid transport (GO:0006869),Molecular Function: lipid binding (GO:0008289);InterPro=Plant lipid transfer protein/Par allergen (IPR000528),Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=J033044B21,001-125-E10;Oryzabase=13524;Expression=AK073466;TENOR=Os12t0114500-01;KEGG=Os12t0114500-01
Chr12	irgsp1_rep	five_prime_UTR	723297	723380	.	+	.	Parent=Os12t0114500-01
Chr12	irgsp1_rep	CDS	723381	723730	.	+	0	Parent=Os12t0114500-01
Chr12	irgsp1_rep	CDS	723864	723873	.	+	1	Parent=Os12t0114500-01
Chr12	irgsp1_rep	three_prime_UTR	723874	724220	.	+	.	Parent=Os12t0114500-01
Chr12	irgsp1_rep	mRNA	727802	728559	.	+	.	ID=Os12t0114800-01;Name=Os12t0114800-01;Locus_id=Os12g0114800;Oryzabase Gene Symbol Synonym(s)=OsLTP1.16%2C OsLtpI.16;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein 1.16%2C lipid transfer protein 1.16%2C type 1 non-specific lipid transfer protein 16;Note=Similar to Lipid transfer protein.;Transcript_evidence=AK104005 (DDBJ%2C Best hit),AK060340 (DDBJ%2C Best hit),AK072917 (DDBJ%2C Best hit),AK119681 (DDBJ%2C Best hit);ORF_evidence=Q2QYL3 (UniProt);GO=Biological Process: lipid transport (GO:0006869),Molecular Function: lipid binding (GO:0008289);InterPro=Plant lipid transfer protein/Par allergen (IPR000528),Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=001-002-F05,001-008-D02,J023148L05,002-156-H12;Oryzabase=13525;TENOR=Os12t0114800-01
Chr12	irgsp1_rep	five_prime_UTR	727802	727891	.	+	.	Parent=Os12t0114800-01
Chr12	irgsp1_rep	CDS	727892	728247	.	+	0	Parent=Os12t0114800-01
Chr12	irgsp1_rep	CDS	728338	728347	.	+	1	Parent=Os12t0114800-01
Chr12	irgsp1_rep	three_prime_UTR	728348	728559	.	+	.	Parent=Os12t0114800-01
Chr12	irgsp1_rep	mRNA	732978	733800	.	-	.	ID=Os12t0114900-01;Name=Os12t0114900-01;Locus_id=Os12g0114900;Note=Non-protein coding transcript.;Transcript_evidence=AK107447 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-128-C01;TENOR=Os12t0114900-01
Chr12	irgsp1_rep	exon	733716	733800	.	-	.	Parent=Os12t0114900-01
Chr12	irgsp1_rep	exon	732978	733610	.	-	.	Parent=Os12t0114900-01
Chr12	irgsp1_rep	mRNA	733276	733623	.	+	.	ID=Os12t0115000-00;Name=Os12t0115000-00;Locus_id=Os12g0115000;Oryzabase Gene Symbol Synonym(s)=OsLTP1.17%2C b1%2C LTP2%2C OsLtpI.17;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein 1.17%2C lipid transfer protein 1.17%2C type 1 non-specific lipid transfer protein 17%2C lipid transfer protein b1%2C nonspecific lipid-transfer protein 2;Note=Similar to Non-specific lipid-transfer protein 2B.;Transcript_evidence=A2ZAT0 (UniProt);ORF_evidence=A2ZAT0 (UniProt);GO=Biological Process: lipid transport (GO:0006869),Molecular Function: lipid binding (GO:0008289);InterPro=Plant lipid transfer protein/Par allergen (IPR000528),Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);Oryzabase=13526;TENOR=Os12t0115000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	733276	733623	.	+	0	Parent=Os12t0115000-00
Chr12	irgsp1_rep	mRNA	733811	734096	.	+	.	ID=Os12t0115050-01;Name=Os12t0115050-01;Locus_id=Os12g0115050;Note=Non-protein coding transcript.;Transcript_evidence=AK058921 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-009-B10;TENOR=Os12t0115050-01
Chr12	irgsp1_rep	exon	733811	734096	.	+	.	Parent=Os12t0115050-01
Chr12	irgsp1_rep	mRNA	737314	738254	.	+	.	ID=Os12t0115100-00;Name=Os12t0115100-00;Locus_id=Os12g0115100;Oryzabase Gene Symbol Synonym(s)=OsLTP1.18%2C OsLTP1%2C nsLTP1%2C a15%2C OsLtpI.18;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein 1.18%2C lipid transfer protein 1.18%2C type 1 non-specific lipid transfer protein 18%2C nonspecific lipid transfer protein-1%2C lipid transfer protein a15;Note=Nonspecific lipid-transfer protein 1 precursor (LTP 1) (PAPI).;Transcript_evidence=CU406598 (DDBJ%2C Best hit);ORF_evidence=Q2RBD2 (UniProt);GO=Biological Process: lipid transport (GO:0006869),Molecular Function: lipid binding (GO:0008289);InterPro=Plant lipid transfer protein/Par allergen (IPR000528),Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);Oryzabase=13527;TENOR=Os12t0115100-00;KEGG=Os12t0115100-00
Chr12	irgsp1_rep	five_prime_UTR	737314	737405	.	+	.	Parent=Os12t0115100-00
Chr12	irgsp1_rep	CDS	737406	737746	.	+	0	Parent=Os12t0115100-00
Chr12	irgsp1_rep	CDS	737885	737894	.	+	1	Parent=Os12t0115100-00
Chr12	irgsp1_rep	three_prime_UTR	737895	738254	.	+	.	Parent=Os12t0115100-00
Chr12	irgsp1_rep	mRNA	737399	737747	.	-	.	ID=Os12t0115150-00;Name=Os12t0115150-00;Locus_id=Os12g0115150;Note=Hypothetical gene.;Transcript_evidence=EU975148 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0115150-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	737400	737747	.	-	0	Parent=Os12t0115150-00
Chr12	irgsp1_rep	three_prime_UTR	737399	737399	.	-	.	Parent=Os12t0115150-00
Chr12	irgsp1_rep	mRNA	746162	747120	.	+	.	ID=Os12t0115300-01;Name=Os12t0115300-01;Locus_id=Os12g0115300;Oryzabase Gene Symbol Synonym(s)=OsLTP1.19%2C OsLtpI.19;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein 1.19%2C lipid transfer protein 1.19%2C type 1 non-specific lipid transfer protein 19;Note=Plant lipid transfer protein and hydrophobic protein%2C helical domain containing protein.;Transcript_evidence=AK059737 (DDBJ%2C Best hit),AK062690 (DDBJ%2C Best hit);ORF_evidence=A2ZHF2 (UniProt);GO=Biological Process: lipid transport (GO:0006869),Molecular Function: lipid binding (GO:0008289);InterPro=Plant lipid transfer protein/Par allergen (IPR000528),Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=006-202-D08,001-106-A02;Oryzabase=13528;TENOR=Os12t0115300-01
Chr12	irgsp1_rep	five_prime_UTR	746162	746243	.	+	.	Parent=Os12t0115300-01
Chr12	irgsp1_rep	CDS	746244	746590	.	+	0	Parent=Os12t0115300-01
Chr12	irgsp1_rep	CDS	746697	746706	.	+	1	Parent=Os12t0115300-01
Chr12	irgsp1_rep	three_prime_UTR	746707	747120	.	+	.	Parent=Os12t0115300-01
Chr12	irgsp1_rep	mRNA	760947	762381	.	+	.	ID=Os12t0115500-01;Name=Os12t0115500-01;Locus_id=Os12g0115500;Oryzabase Gene Symbol Synonym(s)=OsLTP1.20%2C OsLtpI.20%2C LTP1.20%2C OsLTPL14%2C LTPL14;Oryzabase Gene Name Synonym(s)=non-specific lipid transfer protein 1.20%2C lipid transfer protein 1.20%2C type 1 non-specific lipid transfer protein 20;Note=Similar to nonspecific lipid-transfer protein 3.;Transcript_evidence=AK241677 (DDBJ%2C Best hit);ORF_evidence=Q2QYK8 (UniProt);GO=Biological Process: lipid transport (GO:0006869),Molecular Function: lipid binding (GO:0008289);InterPro=Plant lipid transfer protein/Par allergen (IPR000528),Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=J065193A09;Oryzabase=13529;TENOR=Os12t0115500-01;KEGG=Os12t0115500-01
Chr12	irgsp1_rep	five_prime_UTR	760947	761035	.	+	.	Parent=Os12t0115500-01
Chr12	irgsp1_rep	CDS	761036	761382	.	+	0	Parent=Os12t0115500-01
Chr12	irgsp1_rep	CDS	762096	762105	.	+	1	Parent=Os12t0115500-01
Chr12	irgsp1_rep	three_prime_UTR	762106	762381	.	+	.	Parent=Os12t0115500-01
Chr12	irgsp1_rep	mRNA	766441	768578	.	-	.	ID=Os12t0115700-01;Name=Os12t0115700-01;Locus_id=Os12g0115700;Oryzabase Gene Symbol Synonym(s)=CHI%2C OsCHI;Oryzabase Gene Name Synonym(s)=chalcone isomerase%2C Chalcone-flavonone isomerase;Note=Chalcone isomerase domain containing protein.;Transcript_evidence=AK099443 (DDBJ%2C Best hit);ORF_evidence=NP_001150388.1 (RefSeq);GO=Biological Process: flavonoid biosynthetic process (GO:0009813),Biological Process: cellular modified amino acid biosynthetic process (GO:0042398),Molecular Function: intramolecular lyase activity (GO:0016872),Molecular Function: chalcone isomerase activity (GO:0045430);InterPro=Chalcone isomerase%2C subgroup (IPR003466),Chalcone isomerase (IPR016087),Chalcone isomerase%2C 3-layer sandwich (IPR016088);NIAS_FLcDNA=J013021E03;Oryzabase=16781;Expression=AK099443;TENOR=Os12t0115700-01;KEGG=Os12t0115700-01
Chr12	irgsp1_rep	five_prime_UTR	768447	768578	.	-	.	Parent=Os12t0115700-01
Chr12	irgsp1_rep	CDS	768446	768446	.	-	0	Parent=Os12t0115700-01
Chr12	irgsp1_rep	CDS	767985	768074	.	-	2	Parent=Os12t0115700-01
Chr12	irgsp1_rep	CDS	767722	767880	.	-	2	Parent=Os12t0115700-01
Chr12	irgsp1_rep	CDS	767220	767446	.	-	2	Parent=Os12t0115700-01
Chr12	irgsp1_rep	CDS	766949	767110	.	-	0	Parent=Os12t0115700-01
Chr12	irgsp1_rep	three_prime_UTR	766441	766948	.	-	.	Parent=Os12t0115700-01
Chr12	irgsp1_rep	mRNA	766799	767974	.	+	.	ID=Os12t0115801-00;Name=Os12t0115801-00;Locus_id=Os12g0115801;Note=Non-protein coding transcript.;Transcript_evidence=CT828512 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os12t0115801-00
Chr12	irgsp1_rep	exon	766799	767026	.	+	.	Parent=Os12t0115801-00
Chr12	irgsp1_rep	exon	767560	767974	.	+	.	Parent=Os12t0115801-00
Chr12	irgsp1_rep	mRNA	776617	779641	.	+	.	ID=Os12t0115900-01;Name=Os12t0115900-01;Locus_id=Os12g0115900;Note=Translation elongation factor P domain containing protein.;Transcript_evidence=AK058318 (DDBJ%2C Best hit);ORF_evidence=B6UC94 (UniProt);GO=Biological Process: translational elongation (GO:0006414),Biological Process: peptide biosynthetic process (GO:0043043),Cellular Component: cytoplasm (GO:0005737),Molecular Function: translation elongation factor activity (GO:0003746);InterPro=Translation elongation factor P/YeiP%2C central (IPR001059),Translation protein SH3-like (IPR008991),Translation elongation factor P (IPR011768),Nucleic acid-binding%2C OB-fold (IPR012340),Translation elongation factor%2C KOW-like (IPR013185),Translation elongation factor P/YeiP%2C conserved site (IPR013852),Translation protein SH3-like%2C subgroup (IPR014722),Elongation factor P%2C C-terminal (IPR015365),Nucleic acid-binding%2C OB-fold-like (IPR016027),Translation elongation factor P/YeiP (IPR020599);NIAS_FLcDNA=001-014-A09;Expression=AK058318;TENOR=Os12t0115900-01;KEGG=Os12t0115900-01
Chr12	irgsp1_rep	five_prime_UTR	776617	776654	.	+	.	Parent=Os12t0115900-01
Chr12	irgsp1_rep	CDS	776655	776781	.	+	0	Parent=Os12t0115900-01
Chr12	irgsp1_rep	CDS	776871	776948	.	+	2	Parent=Os12t0115900-01
Chr12	irgsp1_rep	CDS	777870	777976	.	+	2	Parent=Os12t0115900-01
Chr12	irgsp1_rep	CDS	778406	778483	.	+	0	Parent=Os12t0115900-01
Chr12	irgsp1_rep	CDS	778879	778980	.	+	0	Parent=Os12t0115900-01
Chr12	irgsp1_rep	CDS	779155	779233	.	+	0	Parent=Os12t0115900-01
Chr12	irgsp1_rep	CDS	779331	779449	.	+	2	Parent=Os12t0115900-01
Chr12	irgsp1_rep	three_prime_UTR	779450	779641	.	+	.	Parent=Os12t0115900-01
Chr12	irgsp1_rep	mRNA	780039	783466	.	-	.	ID=Os12t0115950-00;Name=Os12t0115950-00;Locus_id=Os12g0115950;Note=Conserved hypothetical protein.;Transcript_evidence=AK070010 (DDBJ%2C Secondary hit);ORF_evidence=B9GBI6 (UniProt);TENOR=Os12t0115950-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	783453	783466	.	-	.	Parent=Os12t0115950-00
Chr12	irgsp1_rep	CDS	783061	783452	.	-	0	Parent=Os12t0115950-00
Chr12	irgsp1_rep	CDS	782556	782846	.	-	1	Parent=Os12t0115950-00
Chr12	irgsp1_rep	CDS	782108	782156	.	-	1	Parent=Os12t0115950-00
Chr12	irgsp1_rep	three_prime_UTR	781935	782107	.	-	.	Parent=Os12t0115950-00
Chr12	irgsp1_rep	three_prime_UTR	781681	781788	.	-	.	Parent=Os12t0115950-00
Chr12	irgsp1_rep	three_prime_UTR	781377	781571	.	-	.	Parent=Os12t0115950-00
Chr12	irgsp1_rep	three_prime_UTR	781033	781281	.	-	.	Parent=Os12t0115950-00
Chr12	irgsp1_rep	three_prime_UTR	780459	780711	.	-	.	Parent=Os12t0115950-00
Chr12	irgsp1_rep	three_prime_UTR	780039	780298	.	-	.	Parent=Os12t0115950-00
Chr12	irgsp1_rep	mRNA	783597	788103	.	-	.	ID=Os12t0116000-01;Name=Os12t0116000-01;Locus_id=Os12g0116000;Note=Similar to PV72.;Transcript_evidence=AK066617 (DDBJ%2C Best hit);ORF_evidence=Q2PYW3 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Protease-associated domain%2C PA (IPR003137),EGF-like calcium-binding%2C conserved site (IPR018097);NIAS_FLcDNA=J013073B02;Expression=AK066617;TENOR=Os12t0116000-01;KEGG=Os12t0116000-01
Chr12	irgsp1_rep	CDS	787485	788103	.	-	0	Parent=Os12t0116000-01
Chr12	irgsp1_rep	CDS	786319	787008	.	-	2	Parent=Os12t0116000-01
Chr12	irgsp1_rep	CDS	786146	786234	.	-	2	Parent=Os12t0116000-01
Chr12	irgsp1_rep	CDS	785999	786068	.	-	0	Parent=Os12t0116000-01
Chr12	irgsp1_rep	CDS	785827	785910	.	-	2	Parent=Os12t0116000-01
Chr12	irgsp1_rep	CDS	785617	785693	.	-	2	Parent=Os12t0116000-01
Chr12	irgsp1_rep	CDS	785458	785539	.	-	0	Parent=Os12t0116000-01
Chr12	irgsp1_rep	CDS	784902	784984	.	-	2	Parent=Os12t0116000-01
Chr12	irgsp1_rep	CDS	784763	784820	.	-	0	Parent=Os12t0116000-01
Chr12	irgsp1_rep	CDS	784491	784619	.	-	2	Parent=Os12t0116000-01
Chr12	irgsp1_rep	CDS	784161	784267	.	-	2	Parent=Os12t0116000-01
Chr12	irgsp1_rep	CDS	783962	784060	.	-	0	Parent=Os12t0116000-01
Chr12	irgsp1_rep	three_prime_UTR	783597	783961	.	-	.	Parent=Os12t0116000-01
Chr12	irgsp1_rep	mRNA	783540	788042	.	-	.	ID=Os12t0116000-02;Name=Os12t0116000-02;Locus_id=Os12g0116000;Note=Similar to predicted protein.;Transcript_evidence=AK102691 (DDBJ%2C Best hit);ORF_evidence=Q2PYW3 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EGF-like calcium-binding (IPR001881),Protease-associated domain%2C PA (IPR003137),EGF-like calcium-binding%2C conserved site (IPR018097);NIAS_FLcDNA=J033103D10;Expression=AK102691;TENOR=Os12t0116000-02;KEGG=Os12t0116000-02
Chr12	irgsp1_rep	five_prime_UTR	787798	788042	.	-	.	Parent=Os12t0116000-02
Chr12	irgsp1_rep	CDS	787485	787797	.	-	0	Parent=Os12t0116000-02
Chr12	irgsp1_rep	CDS	786319	787008	.	-	2	Parent=Os12t0116000-02
Chr12	irgsp1_rep	CDS	786146	786234	.	-	2	Parent=Os12t0116000-02
Chr12	irgsp1_rep	CDS	785999	786068	.	-	0	Parent=Os12t0116000-02
Chr12	irgsp1_rep	CDS	785827	785910	.	-	2	Parent=Os12t0116000-02
Chr12	irgsp1_rep	CDS	785617	785693	.	-	2	Parent=Os12t0116000-02
Chr12	irgsp1_rep	CDS	785458	785539	.	-	0	Parent=Os12t0116000-02
Chr12	irgsp1_rep	CDS	784902	784984	.	-	2	Parent=Os12t0116000-02
Chr12	irgsp1_rep	CDS	784763	784820	.	-	0	Parent=Os12t0116000-02
Chr12	irgsp1_rep	CDS	784491	784619	.	-	2	Parent=Os12t0116000-02
Chr12	irgsp1_rep	CDS	784161	784267	.	-	2	Parent=Os12t0116000-02
Chr12	irgsp1_rep	CDS	783962	784060	.	-	0	Parent=Os12t0116000-02
Chr12	irgsp1_rep	three_prime_UTR	783540	783961	.	-	.	Parent=Os12t0116000-02
Chr12	irgsp1_rep	mRNA	789403	790687	.	-	.	ID=Os12t0116100-01;Name=Os12t0116100-01;Locus_id=Os12g0116100;RAP-DB Gene Symbol Synonym(s)=OsWRKY114;CGSNL Gene Symbol=WRKY114;CGSNL Gene Name=WRKY GENE 114;Oryzabase Gene Symbol Synonym(s)=OsWRKY114;Note=WRKY transcription factor%2C Disease resistance against Xoo;Transcript_evidence=Inferred from literature;ORF_evidence=Q2QYK2;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA-binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=WRKY domain superfamily (IPR036576),WRKY domain (IPR003657);Manual Curation=October 21%2C 2020;Literature_PMID=33051057,Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=9228;Subcellular location=nucleus (GO:0005634)
Chr12	irgsp1_rep	CDS	790323	790687	.	-	0	Parent=Os12t0116100-01
Chr12	irgsp1_rep	CDS	790051	790164	.	-	1	Parent=Os12t0116100-01
Chr12	irgsp1_rep	CDS	789403	789937	.	-	1	Parent=Os12t0116100-01
Chr12	irgsp1_rep	mRNA	795606	797635	.	-	.	ID=Os12t0116200-01;Name=Os12t0116200-01;Locus_id=Os12g0116200;Note=Hypothetical conserved gene.;Transcript_evidence=AK066221 (DDBJ%2C Best hit);ORF_evidence=B9GBI8 (UniProt);NIAS_FLcDNA=J013055O08;Expression=AK066221;TENOR=Os12t0116200-01;KEGG=Os12t0116200-01
Chr12	irgsp1_rep	CDS	797467	797635	.	-	0	Parent=Os12t0116200-01
Chr12	irgsp1_rep	CDS	796954	797139	.	-	2	Parent=Os12t0116200-01
Chr12	irgsp1_rep	CDS	796365	796420	.	-	2	Parent=Os12t0116200-01
Chr12	irgsp1_rep	three_prime_UTR	795606	796364	.	-	.	Parent=Os12t0116200-01
Chr12	irgsp1_rep	mRNA	795561	795960	.	-	.	ID=Os12t0116200-02;Name=Os12t0116200-02;Locus_id=Os12g0116200;Note=Non-protein coding transcript.;Transcript_evidence=AK060432 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-011-B03;TENOR=Os12t0116200-02
Chr12	irgsp1_rep	exon	795561	795960	.	-	.	Parent=Os12t0116200-02
Chr12	irgsp1_rep	mRNA	802534	806073	.	-	.	ID=Os12t0116400-00;Name=Os12t0116400-00;Locus_id=Os12g0116400;CGSNL Gene Symbol=WRKY97;CGSNL Gene Name=WRKY GENE 97;Oryzabase Gene Symbol Synonym(s)=OsWRKY97;Note=Similar to WRKY DNA binding domain containing protein%2C expressed.;Transcript_evidence=CT832018 (DDBJ%2C Secondary hit);ORF_evidence=Q2QYK0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=9229;TENOR=Os12t0116400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	805998	806073	.	-	.	Parent=Os12t0116400-00
Chr12	irgsp1_rep	CDS	805918	805997	.	-	0	Parent=Os12t0116400-00
Chr12	irgsp1_rep	CDS	805653	805757	.	-	1	Parent=Os12t0116400-00
Chr12	irgsp1_rep	CDS	802800	803283	.	-	1	Parent=Os12t0116400-00
Chr12	irgsp1_rep	three_prime_UTR	802534	802799	.	-	.	Parent=Os12t0116400-00
Chr12	irgsp1_rep	mRNA	817004	820412	.	-	.	ID=Os12t0116600-01;Name=Os12t0116600-01;Locus_id=Os12g0116600;CGSNL Gene Symbol=WRKY95;CGSNL Gene Name=WRKY GENE 95;Oryzabase Gene Symbol Synonym(s)=OsWRKY95;Note=Similar to Transcription factor (Fragment).;Transcript_evidence=AK102093 (DDBJ%2C Best hit);ORF_evidence=Q2RBB9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);NIAS_FLcDNA=J033083A06;Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=9230;Expression=AK102093;TENOR=Os12t0116600-01;KEGG=Os12t0116600-01
Chr12	irgsp1_rep	five_prime_UTR	818080	820412	.	-	.	Parent=Os12t0116600-01
Chr12	irgsp1_rep	CDS	817910	818079	.	-	0	Parent=Os12t0116600-01
Chr12	irgsp1_rep	CDS	817710	817817	.	-	1	Parent=Os12t0116600-01
Chr12	irgsp1_rep	CDS	817185	817602	.	-	1	Parent=Os12t0116600-01
Chr12	irgsp1_rep	three_prime_UTR	817004	817184	.	-	.	Parent=Os12t0116600-01
Chr12	irgsp1_rep	mRNA	824221	825793	.	-	.	ID=Os12t0116700-01;Name=Os12t0116700-01;Locus_id=Os12g0116700;CGSNL Gene Symbol=WRKY64;CGSNL Gene Name=WRKY GENE 64;Oryzabase Gene Symbol Synonym(s)=OsWRKY64;Oryzabase Gene Name Synonym(s)=Rice WRKY gene64;Note=Similar to WRKY transcription factor 64.;Transcript_evidence=AK241326 (DDBJ%2C Best hit);ORF_evidence=Q20DP7 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);NIAS_FLcDNA=J065143F14;Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6579;TENOR=Os12t0116700-01;KEGG=Os12t0116700-01
Chr12	irgsp1_rep	five_prime_UTR	825659	825793	.	-	.	Parent=Os12t0116700-01
Chr12	irgsp1_rep	five_prime_UTR	825541	825551	.	-	.	Parent=Os12t0116700-01
Chr12	irgsp1_rep	CDS	825149	825540	.	-	0	Parent=Os12t0116700-01
Chr12	irgsp1_rep	CDS	824902	825006	.	-	1	Parent=Os12t0116700-01
Chr12	irgsp1_rep	CDS	824302	824770	.	-	1	Parent=Os12t0116700-01
Chr12	irgsp1_rep	three_prime_UTR	824221	824301	.	-	.	Parent=Os12t0116700-01
Chr12	irgsp1_rep	mRNA	836516	838755	.	-	.	ID=Os12t0116800-01;Name=Os12t0116800-01;Locus_id=Os12g0116800;RAP-DB Gene Symbol Synonym(s)=OsWRKY65;CGSNL Gene Symbol=WRKY65;CGSNL Gene Name=WRKY GENE65;Oryzabase Gene Symbol Synonym(s)=OsWRKY65;Oryzabase Gene Name Synonym(s)=Rice WRKY gene65;Note=WRKY transcription factor%2C Bacterial blight disease resistance%2C Bakanae disease resistance;Transcript_evidence=Inferred from literature;ORF_evidence=Q6IEL6 (indica);GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA-binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=WRKY domain superfamily (IPR036576),WRKY domain (IPR003657);Manual Curation=October 27%2C 2020;Literature_PMID=33097183,Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=6580;TENOR=Os12t0116800-00,Os12t0116750-00;Subcellular location=nucleus (GO:0005634)
Chr12	irgsp1_rep	CDS	838427	838755	.	-	0	Parent=Os12t0116800-01
Chr12	irgsp1_rep	CDS	838117	838230	.	-	1	Parent=Os12t0116800-01
Chr12	irgsp1_rep	CDS	836516	837098	.	-	1	Parent=Os12t0116800-01
Chr12	irgsp1_rep	mRNA	845957	848289	.	-	.	ID=Os12t0116900-01;Name=Os12t0116900-01;Locus_id=Os12g0116900;Note=Hypothetical conserved gene.;Transcript_evidence=AK069763 (DDBJ%2C Best hit);ORF_evidence=B9GBJ0 (UniProt);NIAS_FLcDNA=J023029P11;Expression=AK069763;TENOR=Os12t0116900-01;KEGG=Os12t0116900-01
Chr12	irgsp1_rep	five_prime_UTR	848212	848289	.	-	.	Parent=Os12t0116900-01
Chr12	irgsp1_rep	CDS	848002	848211	.	-	0	Parent=Os12t0116900-01
Chr12	irgsp1_rep	CDS	847667	847687	.	-	0	Parent=Os12t0116900-01
Chr12	irgsp1_rep	three_prime_UTR	847400	847666	.	-	.	Parent=Os12t0116900-01
Chr12	irgsp1_rep	three_prime_UTR	845957	847305	.	-	.	Parent=Os12t0116900-01
Chr12	irgsp1_rep	mRNA	854005	855382	.	+	.	ID=Os12t0117100-01;Name=Os12t0117100-01;Locus_id=Os12g0117100;Note=Alpha/beta hydrolase fold-1 domain containing protein.;Transcript_evidence=AK059932 (DDBJ%2C Best hit);ORF_evidence=Q2RBB4 (UniProt);NIAS_FLcDNA=006-210-B10;Expression=AK059932;TENOR=Os12t0117100-01;KEGG=Os12t0117100-01
Chr12	irgsp1_rep	five_prime_UTR	854005	854042	.	+	.	Parent=Os12t0117100-01
Chr12	irgsp1_rep	CDS	854043	854300	.	+	0	Parent=Os12t0117100-01
Chr12	irgsp1_rep	CDS	854427	854567	.	+	0	Parent=Os12t0117100-01
Chr12	irgsp1_rep	CDS	854653	854787	.	+	0	Parent=Os12t0117100-01
Chr12	irgsp1_rep	CDS	854866	855138	.	+	0	Parent=Os12t0117100-01
Chr12	irgsp1_rep	three_prime_UTR	855139	855382	.	+	.	Parent=Os12t0117100-01
Chr12	irgsp1_rep	mRNA	856163	858045	.	+	.	ID=Os12t0117200-00;Name=Os12t0117200-00;Locus_id=Os12g0117200;Note=Similar to esterase PIR7A.;Transcript_evidence=AK100743 (DDBJ%2C Secondary hit);ORF_evidence=NP_001152091.1 (RefSeq);Expression=AK100743;TENOR=Os12t0117200-00;KEGG=Os12t0117200-00
Chr12	irgsp1_rep	five_prime_UTR	856163	856268	.	+	.	Parent=Os12t0117200-00
Chr12	irgsp1_rep	CDS	856269	856493	.	+	0	Parent=Os12t0117200-00
Chr12	irgsp1_rep	CDS	856970	857110	.	+	0	Parent=Os12t0117200-00
Chr12	irgsp1_rep	CDS	857235	857363	.	+	0	Parent=Os12t0117200-00
Chr12	irgsp1_rep	CDS	857687	857950	.	+	0	Parent=Os12t0117200-00
Chr12	irgsp1_rep	three_prime_UTR	857951	858045	.	+	.	Parent=Os12t0117200-00
Chr12	irgsp1_rep	mRNA	858569	860590	.	-	.	ID=Os12t0117300-00;Name=Os12t0117300-00;Locus_id=Os12g0117300;Note=Similar to Mannan endo-1%2C4-beta-mannosidase 8.;Transcript_evidence=AK370093 (DDBJ);ORF_evidence=Q0IQJ7 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 5 (IPR001547),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 5%2C conserved site (IPR018087);TENOR=Os12t0117300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	860529	860590	.	-	.	Parent=Os12t0117300-00
Chr12	irgsp1_rep	CDS	860259	860528	.	-	0	Parent=Os12t0117300-00
Chr12	irgsp1_rep	CDS	859662	859856	.	-	0	Parent=Os12t0117300-00
Chr12	irgsp1_rep	CDS	859428	859550	.	-	0	Parent=Os12t0117300-00
Chr12	irgsp1_rep	CDS	859123	859334	.	-	0	Parent=Os12t0117300-00
Chr12	irgsp1_rep	CDS	858627	858975	.	-	1	Parent=Os12t0117300-00
Chr12	irgsp1_rep	three_prime_UTR	858569	858626	.	-	.	Parent=Os12t0117300-00
Chr12	irgsp1_rep	mRNA	860277	861099	.	+	.	ID=Os12t0117350-01;Name=Os12t0117350-01;Locus_id=Os12g0117350;Note=Hypothetical gene.;Transcript_evidence=AK070296 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023052L02;Expression=AK070296;TENOR=Os12t0117350-01;KEGG=Os12t0117350-01
Chr12	irgsp1_rep	five_prime_UTR	860277	860704	.	+	.	Parent=Os12t0117350-01
Chr12	irgsp1_rep	CDS	860705	860926	.	+	0	Parent=Os12t0117350-01
Chr12	irgsp1_rep	three_prime_UTR	860927	861099	.	+	.	Parent=Os12t0117350-01
Chr12	irgsp1_rep	mRNA	861211	863519	.	-	.	ID=Os12t0117400-01;Name=Os12t0117400-01;Locus_id=Os12g0117400;Note=Similar to RPT2-like protein.;Transcript_evidence=AK060741 (DDBJ%2C Best hit);ORF_evidence=B6ST41 (UniProt);GO=Biological Process: response to light stimulus (GO:0009416),Molecular Function: signal transducer activity (GO:0004871);InterPro=NPH3 (IPR004249),BTB/POZ fold (IPR011333);NIAS_FLcDNA=001-032-D09;TENOR=Os12t0117400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	863357	863519	.	-	.	Parent=Os12t0117400-01
Chr12	irgsp1_rep	CDS	863337	863356	.	-	0	Parent=Os12t0117400-01
Chr12	irgsp1_rep	CDS	863168	863237	.	-	1	Parent=Os12t0117400-01
Chr12	irgsp1_rep	CDS	861330	862952	.	-	0	Parent=Os12t0117400-01
Chr12	irgsp1_rep	three_prime_UTR	861211	861329	.	-	.	Parent=Os12t0117400-01
Chr12	irgsp1_rep	mRNA	861316	863115	.	+	.	ID=Os12t0117500-01;Name=Os12t0117500-01;Locus_id=Os12g0117500;Note=Hypothetical protein.;Transcript_evidence=AK109861 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-148-H03;TENOR=Os12t0117500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	861316	861849	.	+	.	Parent=Os12t0117500-01
Chr12	irgsp1_rep	CDS	861850	862368	.	+	0	Parent=Os12t0117500-01
Chr12	irgsp1_rep	three_prime_UTR	862369	863115	.	+	.	Parent=Os12t0117500-01
Chr12	irgsp1_rep	mRNA	865229	869553	.	-	.	ID=Os12t0117600-01;Name=Os12t0117600-01;Locus_id=Os12g0117600;Note=BTB domain containing protein.;Transcript_evidence=AK066267 (DDBJ%2C Best hit);ORF_evidence=NP_187469.4 (RefSeq);GO=Biological Process: response to light stimulus (GO:0009416),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),NPH3 (IPR004249),BTB/POZ fold (IPR011333);NIAS_FLcDNA=J013059E13;Expression=AK066267;TENOR=Os12t0117600-01;KEGG=Os12t0117600-01
Chr12	irgsp1_rep	five_prime_UTR	869469	869553	.	-	.	Parent=Os12t0117600-01
Chr12	irgsp1_rep	CDS	869377	869468	.	-	0	Parent=Os12t0117600-01
Chr12	irgsp1_rep	CDS	868128	868194	.	-	1	Parent=Os12t0117600-01
Chr12	irgsp1_rep	CDS	866260	867408	.	-	0	Parent=Os12t0117600-01
Chr12	irgsp1_rep	CDS	865380	866027	.	-	0	Parent=Os12t0117600-01
Chr12	irgsp1_rep	three_prime_UTR	865229	865379	.	-	.	Parent=Os12t0117600-01
Chr12	irgsp1_rep	mRNA	871847	872269	.	+	.	ID=Os12t0117700-01;Name=Os12t0117700-01;Locus_id=Os12g0117700;Note=Similar to RNA binding protein.;Transcript_evidence=AK107752 (DDBJ%2C Best hit);ORF_evidence=B6UFA0 (UniProt);NIAS_FLcDNA=002-132-H10;Expression=AK107752;TENOR=Os12t0117700-01;KEGG=Os12t0117700-01
Chr12	irgsp1_rep	five_prime_UTR	871847	871888	.	+	.	Parent=Os12t0117700-01
Chr12	irgsp1_rep	CDS	871889	872026	.	+	0	Parent=Os12t0117700-01
Chr12	irgsp1_rep	three_prime_UTR	872027	872269	.	+	.	Parent=Os12t0117700-01
Chr12	irgsp1_rep	mRNA	876728	878237	.	-	.	ID=Os12t0117800-01;Name=Os12t0117800-01;Locus_id=Os12g0117800;Note=Similar to predicted protein.;Transcript_evidence=AK108947 (DDBJ%2C Best hit);ORF_evidence=NP_001066004.2 (RefSeq);InterPro=Protein of unknown function DUF1191 (IPR010605);NIAS_FLcDNA=002-153-C01;TENOR=Os12t0117800-01
Chr12	irgsp1_rep	five_prime_UTR	877653	878237	.	-	.	Parent=Os12t0117800-01
Chr12	irgsp1_rep	CDS	876728	877652	.	-	0	Parent=Os12t0117800-01
Chr12	irgsp1_rep	mRNA	876268	877661	.	+	.	ID=Os12t0117850-00;Name=Os12t0117850-00;Locus_id=Os12g0117850;Note=Hypothetical protein.;Transcript_evidence=tplb0059d07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0117850-00
Chr12	irgsp1_rep	five_prime_UTR	876268	876903	.	+	.	Parent=Os12t0117850-00
Chr12	irgsp1_rep	CDS	876904	877257	.	+	0	Parent=Os12t0117850-00
Chr12	irgsp1_rep	three_prime_UTR	877258	877661	.	+	.	Parent=Os12t0117850-00
Chr12	irgsp1_rep	mRNA	873235	873791	.	+	.	ID=Os12t0117900-01;Name=Os12t0117900-01;Locus_id=Os12g0117900;Note=Hypothetical conserved gene.;Transcript_evidence=AK063661 (DDBJ%2C Best hit);ORF_evidence=NP_001064931.1 (RefSeq);NIAS_FLcDNA=001-119-C03;TENOR=Os12t0117900-01
Chr12	irgsp1_rep	five_prime_UTR	873235	873393	.	+	.	Parent=Os12t0117900-01
Chr12	irgsp1_rep	CDS	873394	873791	.	+	0	Parent=Os12t0117900-01
Chr12	irgsp1_rep	mRNA	885080	890794	.	+	.	ID=Os12t0118000-00;Name=Os12t0118000-00;Locus_id=Os12g0118000;Note=Non-protein coding transcript.;Transcript_evidence=tplb0051b16 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os12t0118000-00
Chr12	irgsp1_rep	exon	885080	885785	.	+	.	Parent=Os12t0118000-00
Chr12	irgsp1_rep	exon	888867	889029	.	+	.	Parent=Os12t0118000-00
Chr12	irgsp1_rep	exon	889278	889472	.	+	.	Parent=Os12t0118000-00
Chr12	irgsp1_rep	exon	889660	889789	.	+	.	Parent=Os12t0118000-00
Chr12	irgsp1_rep	exon	889896	890064	.	+	.	Parent=Os12t0118000-00
Chr12	irgsp1_rep	exon	890674	890794	.	+	.	Parent=Os12t0118000-00
Chr12	irgsp1_rep	mRNA	887161	890817	.	-	.	ID=Os12t0118200-01;Name=Os12t0118200-01;Locus_id=Os12g0118200;Note=Conserved hypothetical protein.;Transcript_evidence=AK066991 (DDBJ%2C Best hit);ORF_evidence=B8BNY6 (UniProt);NIAS_FLcDNA=J013090M19;Expression=AK066991;TENOR=Os12t0118200-01;KEGG=Os12t0118200-01
Chr12	irgsp1_rep	five_prime_UTR	890756	890817	.	-	.	Parent=Os12t0118200-01
Chr12	irgsp1_rep	CDS	890683	890755	.	-	0	Parent=Os12t0118200-01
Chr12	irgsp1_rep	CDS	889900	890081	.	-	2	Parent=Os12t0118200-01
Chr12	irgsp1_rep	CDS	889668	889793	.	-	0	Parent=Os12t0118200-01
Chr12	irgsp1_rep	CDS	889285	889479	.	-	0	Parent=Os12t0118200-01
Chr12	irgsp1_rep	CDS	888855	889031	.	-	0	Parent=Os12t0118200-01
Chr12	irgsp1_rep	three_prime_UTR	887161	888854	.	-	.	Parent=Os12t0118200-01
Chr12	irgsp1_rep	mRNA	891782	892530	.	+	.	ID=Os12t0118400-01;Name=Os12t0118400-01;Locus_id=Os12g0118400;Note=Similar to Inwardly rectifying potassium channel subunit.;Transcript_evidence=AK062407 (DDBJ%2C Best hit);ORF_evidence=Q6ZXS4 (UniProt);GO=Biological Process: potassium ion transport (GO:0006813),Cellular Component: membrane (GO:0016020),Molecular Function: voltage-gated potassium channel activity (GO:0005249);InterPro=Potassium channel%2C voltage-dependent%2C EAG/ELK/ERG (IPR003938),Ion transport 2 (IPR013099);NIAS_FLcDNA=001-102-E09;Expression=AK062407;TENOR=Os12t0118400-01;KEGG=Os12t0118400-01
Chr12	irgsp1_rep	five_prime_UTR	891782	892040	.	+	.	Parent=Os12t0118400-01
Chr12	irgsp1_rep	CDS	892041	892319	.	+	0	Parent=Os12t0118400-01
Chr12	irgsp1_rep	three_prime_UTR	892320	892530	.	+	.	Parent=Os12t0118400-01
Chr12	irgsp1_rep	mRNA	891788	898384	.	+	.	ID=Os12t0118400-02;Name=Os12t0118400-02;Locus_id=Os12g0118400;Note=Similar to Catalytic/ hydrolase.;Transcript_evidence=AK111804 (DDBJ%2C Best hit);ORF_evidence=B4FMK4 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Epoxide hydrolase-like (IPR000639),Ion transport 2 (IPR013099);NIAS_FLcDNA=J013078I18;TENOR=Os12t0118400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	891788	892121	.	+	.	Parent=Os12t0118400-02
Chr12	irgsp1_rep	CDS	892122	892298	.	+	0	Parent=Os12t0118400-02
Chr12	irgsp1_rep	CDS	896024	896174	.	+	0	Parent=Os12t0118400-02
Chr12	irgsp1_rep	CDS	896410	896884	.	+	2	Parent=Os12t0118400-02
Chr12	irgsp1_rep	CDS	896974	897316	.	+	1	Parent=Os12t0118400-02
Chr12	irgsp1_rep	CDS	897533	897631	.	+	0	Parent=Os12t0118400-02
Chr12	irgsp1_rep	CDS	897708	897828	.	+	0	Parent=Os12t0118400-02
Chr12	irgsp1_rep	CDS	898032	898255	.	+	2	Parent=Os12t0118400-02
Chr12	irgsp1_rep	three_prime_UTR	898256	898384	.	+	.	Parent=Os12t0118400-02
Chr12	irgsp1_rep	mRNA	906322	908669	.	+	.	ID=Os12t0118700-01;Name=Os12t0118700-01;Locus_id=Os12g0118700;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK073862 (DDBJ%2C Best hit);ORF_evidence=NP_001148976.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J033073H23;Expression=AK073862;TENOR=Os12t0118700-01;KEGG=Os12t0118700-01
Chr12	irgsp1_rep	five_prime_UTR	906322	906734	.	+	.	Parent=Os12t0118700-01
Chr12	irgsp1_rep	five_prime_UTR	906848	906915	.	+	.	Parent=Os12t0118700-01
Chr12	irgsp1_rep	CDS	906916	908415	.	+	0	Parent=Os12t0118700-01
Chr12	irgsp1_rep	three_prime_UTR	908416	908669	.	+	.	Parent=Os12t0118700-01
Chr12	irgsp1_rep	mRNA	906832	927893	.	-	.	ID=Os12t0118800-01;Name=Os12t0118800-01;Locus_id=Os12g0118800;Note=Ankyrin repeat containing protein.;Transcript_evidence=AK063302 (DDBJ%2C Best hit);ORF_evidence=B9GBK2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=001-113-F04;Expression=AK063302;TENOR=Os12t0118800-01;KEGG=Os12t0118800-01
Chr12	irgsp1_rep	five_prime_UTR	927654	927893	.	-	.	Parent=Os12t0118800-01
Chr12	irgsp1_rep	CDS	927471	927653	.	-	0	Parent=Os12t0118800-01
Chr12	irgsp1_rep	CDS	926839	927324	.	-	0	Parent=Os12t0118800-01
Chr12	irgsp1_rep	CDS	926351	926731	.	-	0	Parent=Os12t0118800-01
Chr12	irgsp1_rep	CDS	923009	923106	.	-	0	Parent=Os12t0118800-01
Chr12	irgsp1_rep	CDS	922874	922923	.	-	1	Parent=Os12t0118800-01
Chr12	irgsp1_rep	CDS	922556	922620	.	-	2	Parent=Os12t0118800-01
Chr12	irgsp1_rep	CDS	921988	922296	.	-	0	Parent=Os12t0118800-01
Chr12	irgsp1_rep	three_prime_UTR	921969	921987	.	-	.	Parent=Os12t0118800-01
Chr12	irgsp1_rep	three_prime_UTR	917563	917885	.	-	.	Parent=Os12t0118800-01
Chr12	irgsp1_rep	three_prime_UTR	909014	909072	.	-	.	Parent=Os12t0118800-01
Chr12	irgsp1_rep	three_prime_UTR	906832	907882	.	-	.	Parent=Os12t0118800-01
Chr12	irgsp1_rep	mRNA	909274	912128	.	-	.	ID=Os12t0118850-00;Name=Os12t0118850-00;Locus_id=Os12g0118850;Note=Hypothetical protein.;Transcript_evidence=tplb0053a11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0118850-00
Chr12	irgsp1_rep	five_prime_UTR	911976	912128	.	-	.	Parent=Os12t0118850-00
Chr12	irgsp1_rep	CDS	911672	911975	.	-	0	Parent=Os12t0118850-00
Chr12	irgsp1_rep	CDS	911505	911593	.	-	2	Parent=Os12t0118850-00
Chr12	irgsp1_rep	three_prime_UTR	911361	911504	.	-	.	Parent=Os12t0118850-00
Chr12	irgsp1_rep	three_prime_UTR	910762	911066	.	-	.	Parent=Os12t0118850-00
Chr12	irgsp1_rep	three_prime_UTR	910450	910657	.	-	.	Parent=Os12t0118850-00
Chr12	irgsp1_rep	three_prime_UTR	909274	909533	.	-	.	Parent=Os12t0118850-00
Chr12	irgsp1_rep	mRNA	910825	912395	.	+	.	ID=Os12t0118900-01;Name=Os12t0118900-01;Locus_id=Os12g0118900;CGSNL Gene Symbol=CYP714C1;CGSNL Gene Name=P-450 714C1;Oryzabase Gene Symbol Synonym(s)=CYP714C1;Oryzabase Gene Name Synonym(s)=CytoChrome P450 714C1;Note=CytoChrome P450 family protein.;Transcript_evidence=AK062692 (DDBJ%2C Best hit);ORF_evidence=B9GBJ9 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=001-106-A04;Oryzabase=12265;Expression=AK062692;TENOR=Os12t0118900-01;KEGG=Os12t0118900-01
Chr12	irgsp1_rep	five_prime_UTR	910825	910825	.	+	.	Parent=Os12t0118900-01
Chr12	irgsp1_rep	CDS	910826	910980	.	+	0	Parent=Os12t0118900-01
Chr12	irgsp1_rep	CDS	911275	911611	.	+	1	Parent=Os12t0118900-01
Chr12	irgsp1_rep	CDS	911707	912135	.	+	0	Parent=Os12t0118900-01
Chr12	irgsp1_rep	three_prime_UTR	912136	912395	.	+	.	Parent=Os12t0118900-01
Chr12	irgsp1_rep	mRNA	912504	916364	.	+	.	ID=Os12t0119000-01;Name=Os12t0119000-01;Locus_id=Os12g0119000;CGSNL Gene Symbol=CYP714C2;CGSNL Gene Name=P-450 714C2;Oryzabase Gene Symbol Synonym(s)=CYP714C2;Oryzabase Gene Name Synonym(s)=CytoChrome P450 714C2;Note=CytoChrome P450 family protein.;Transcript_evidence=AK066943 (DDBJ%2C Best hit);ORF_evidence=XP_002319441.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J013089N23;Oryzabase=12266;Expression=AK066943;TENOR=Os12t0119000-01;KEGG=Os12t0119000-01
Chr12	irgsp1_rep	five_prime_UTR	912504	912656	.	+	.	Parent=Os12t0119000-01
Chr12	irgsp1_rep	five_prime_UTR	913118	913311	.	+	.	Parent=Os12t0119000-01
Chr12	irgsp1_rep	CDS	913312	913615	.	+	0	Parent=Os12t0119000-01
Chr12	irgsp1_rep	CDS	914145	914371	.	+	2	Parent=Os12t0119000-01
Chr12	irgsp1_rep	CDS	914507	914754	.	+	0	Parent=Os12t0119000-01
Chr12	irgsp1_rep	CDS	915293	915656	.	+	1	Parent=Os12t0119000-01
Chr12	irgsp1_rep	CDS	915758	916183	.	+	0	Parent=Os12t0119000-01
Chr12	irgsp1_rep	three_prime_UTR	916184	916364	.	+	.	Parent=Os12t0119000-01
Chr12	irgsp1_rep	mRNA	913322	916188	.	-	.	ID=Os12t0119175-00;Name=Os12t0119175-00;Locus_id=Os12g0119175;Note=Hypothetical protein.;Transcript_evidence=tplb0053a11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0119175-00
Chr12	irgsp1_rep	five_prime_UTR	915756	916188	.	-	.	Parent=Os12t0119175-00
Chr12	irgsp1_rep	five_prime_UTR	915305	915654	.	-	.	Parent=Os12t0119175-00
Chr12	irgsp1_rep	five_prime_UTR	914689	914768	.	-	.	Parent=Os12t0119175-00
Chr12	irgsp1_rep	CDS	914505	914688	.	-	0	Parent=Os12t0119175-00
Chr12	irgsp1_rep	CDS	914254	914369	.	-	2	Parent=Os12t0119175-00
Chr12	irgsp1_rep	three_prime_UTR	914129	914253	.	-	.	Parent=Os12t0119175-00
Chr12	irgsp1_rep	three_prime_UTR	913322	913598	.	-	.	Parent=Os12t0119175-00
Chr12	irgsp1_rep	mRNA	919135	921592	.	+	.	ID=Os12t0119350-00;Name=Os12t0119350-00;Locus_id=Os12g0119350;Note=Hypothetical conserved gene.;Transcript_evidence=AK241076 (DDBJ%2C Secondary hit);ORF_evidence=B9GBK1 (UniProt);TENOR=Os12t0119350-00;KEGG=Os12t0119350-00
Chr12	irgsp1_rep	five_prime_UTR	919135	919135	.	+	.	Parent=Os12t0119350-00
Chr12	irgsp1_rep	CDS	919136	919201	.	+	0	Parent=Os12t0119350-00
Chr12	irgsp1_rep	CDS	919418	919527	.	+	0	Parent=Os12t0119350-00
Chr12	irgsp1_rep	CDS	920484	921255	.	+	1	Parent=Os12t0119350-00
Chr12	irgsp1_rep	three_prime_UTR	921256	921592	.	+	.	Parent=Os12t0119350-00
Chr12	irgsp1_rep	mRNA	935256	937422	.	+	.	ID=Os12t0119600-00;Name=Os12t0119600-00;Locus_id=Os12g0119600;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QYH3 (UniProt);TENOR=Os12t0119600-00
Chr12	irgsp1_rep	CDS	935256	935425	.	+	0	Parent=Os12t0119600-00
Chr12	irgsp1_rep	CDS	936900	937155	.	+	1	Parent=Os12t0119600-00
Chr12	irgsp1_rep	CDS	937270	937422	.	+	0	Parent=Os12t0119600-00
Chr12	irgsp1_rep	mRNA	940868	943989	.	+	.	ID=Os12t0119700-01;Name=Os12t0119700-01;Locus_id=Os12g0119700;Note=Conserved hypothetical protein.;Transcript_evidence=AK072581 (DDBJ%2C Best hit);ORF_evidence=A2ZHI5 (UniProt);NIAS_FLcDNA=J023130K21;Expression=AK072581;TENOR=Os12t0119700-01;KEGG=Os12t0119700-01
Chr12	irgsp1_rep	five_prime_UTR	940868	942111	.	+	.	Parent=Os12t0119700-01
Chr12	irgsp1_rep	five_prime_UTR	942874	942922	.	+	.	Parent=Os12t0119700-01
Chr12	irgsp1_rep	CDS	942923	943648	.	+	0	Parent=Os12t0119700-01
Chr12	irgsp1_rep	three_prime_UTR	943649	943989	.	+	.	Parent=Os12t0119700-01
Chr12	irgsp1_rep	mRNA	944441	945546	.	-	.	ID=Os12t0119800-01;Name=Os12t0119800-01;Locus_id=Os12g0119800;Note=Similar to Harpin-induced protein 1 containing protein%2C expressed.;Transcript_evidence=AK059980 (DDBJ%2C Best hit),AK104583 (DDBJ%2C Best hit),AK287877 (DDBJ%2C Best hit);ORF_evidence=Q2RB97 (UniProt);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=006-212-E05,006-307-F04,J065205L11;TENOR=Os12t0119800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	945475	945546	.	-	.	Parent=Os12t0119800-01
Chr12	irgsp1_rep	CDS	944773	945474	.	-	0	Parent=Os12t0119800-01
Chr12	irgsp1_rep	three_prime_UTR	944441	944772	.	-	.	Parent=Os12t0119800-01
Chr12	irgsp1_rep	mRNA	947150	950199	.	-	.	ID=Os12t0120000-01;Name=Os12t0120000-01;Locus_id=Os12g0120000;Note=Protein of unknown function DUF936%2C plant family protein.;Transcript_evidence=AK105399 (DDBJ%2C Best hit);ORF_evidence=B8BNZ5 (UniProt);InterPro=Protein of unknown function DUF936%2C plant (IPR010341);NIAS_FLcDNA=001-123-C07;Expression=AK105399;TENOR=Os12t0120000-01;KEGG=Os12t0120000-01
Chr12	irgsp1_rep	five_prime_UTR	950157	950199	.	-	.	Parent=Os12t0120000-01
Chr12	irgsp1_rep	CDS	949059	950156	.	-	0	Parent=Os12t0120000-01
Chr12	irgsp1_rep	CDS	948462	948680	.	-	0	Parent=Os12t0120000-01
Chr12	irgsp1_rep	CDS	948283	948374	.	-	0	Parent=Os12t0120000-01
Chr12	irgsp1_rep	CDS	947480	948197	.	-	1	Parent=Os12t0120000-01
Chr12	irgsp1_rep	three_prime_UTR	947150	947479	.	-	.	Parent=Os12t0120000-01
Chr12	irgsp1_rep	mRNA	954491	955661	.	-	.	ID=Os12t0120100-01;Name=Os12t0120100-01;Locus_id=Os12g0120100;Note=Protein of unknown function DUF567 family protein.;Transcript_evidence=AK073422 (DDBJ%2C Best hit);ORF_evidence=NP_001149433.1 (RefSeq);GO=Biological Process: cellular metabolic process (GO:0044237);InterPro=Tubby%2C C-terminal (IPR000007),Initiation factor 2B-related (IPR000649),Protein of unknown function DUF567 (IPR007612);NIAS_FLcDNA=J033044A06;Expression=AK073422;TENOR=Os12t0120100-01;KEGG=Os12t0120100-01
Chr12	irgsp1_rep	five_prime_UTR	955555	955661	.	-	.	Parent=Os12t0120100-01
Chr12	irgsp1_rep	CDS	954886	955554	.	-	0	Parent=Os12t0120100-01
Chr12	irgsp1_rep	three_prime_UTR	954491	954885	.	-	.	Parent=Os12t0120100-01
Chr12	irgsp1_rep	mRNA	964545	966927	.	+	.	ID=Os12t0120200-01;Name=Os12t0120200-01;Locus_id=Os12g0120200;Note=Similar to ATPase-like protein.;Transcript_evidence=AK242512 (DDBJ%2C Best hit);ORF_evidence=Q84YD8 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Histidine triad motif (IPR011151);NIAS_FLcDNA=J080311P18;TENOR=Os12t0120200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	964545	964560	.	+	.	Parent=Os12t0120200-01
Chr12	irgsp1_rep	CDS	964561	964828	.	+	0	Parent=Os12t0120200-01
Chr12	irgsp1_rep	CDS	965468	965577	.	+	2	Parent=Os12t0120200-01
Chr12	irgsp1_rep	three_prime_UTR	965578	966193	.	+	.	Parent=Os12t0120200-01
Chr12	irgsp1_rep	three_prime_UTR	966479	966577	.	+	.	Parent=Os12t0120200-01
Chr12	irgsp1_rep	three_prime_UTR	966669	966927	.	+	.	Parent=Os12t0120200-01
Chr12	irgsp1_rep	mRNA	966668	969456	.	+	.	ID=Os12t0120200-02;Name=Os12t0120200-02;Locus_id=Os12g0120200;Note=Similar to HIT domain containing protein.;Transcript_evidence=AK119337 (DDBJ%2C Best hit);ORF_evidence=Q2RB94 (UniProt);NIAS_FLcDNA=001-131-D01;TENOR=Os12t0120200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	966668	968812	.	+	.	Parent=Os12t0120200-02
Chr12	irgsp1_rep	CDS	968813	969094	.	+	0	Parent=Os12t0120200-02
Chr12	irgsp1_rep	three_prime_UTR	969095	969456	.	+	.	Parent=Os12t0120200-02
Chr12	irgsp1_rep	mRNA	971331	975926	.	+	.	ID=Os12t0120400-01;Name=Os12t0120400-01;Locus_id=Os12g0120400;Note=Similar to ATPase-like protein.;Transcript_evidence=AK099904 (DDBJ%2C Best hit);ORF_evidence=B8BNZ7 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Histidine triad (HIT) protein (IPR001310),Histidine triad-like motif (IPR011146),Histidine triad motif (IPR011151),Histidine triad%2C conserved site (IPR019808);NIAS_FLcDNA=J013115I04;Expression=AK099904;TENOR=Os12t0120400-01;KEGG=Os12t0120400-01 (EC:3.6.1.29)
Chr12	irgsp1_rep	five_prime_UTR	971331	971390	.	+	.	Parent=Os12t0120400-01
Chr12	irgsp1_rep	five_prime_UTR	971510	972097	.	+	.	Parent=Os12t0120400-01
Chr12	irgsp1_rep	CDS	972098	972250	.	+	0	Parent=Os12t0120400-01
Chr12	irgsp1_rep	CDS	972481	972579	.	+	0	Parent=Os12t0120400-01
Chr12	irgsp1_rep	CDS	974617	974727	.	+	0	Parent=Os12t0120400-01
Chr12	irgsp1_rep	three_prime_UTR	974728	974798	.	+	.	Parent=Os12t0120400-01
Chr12	irgsp1_rep	three_prime_UTR	975332	975926	.	+	.	Parent=Os12t0120400-01
Chr12	irgsp1_rep	mRNA	975104	977096	.	-	.	ID=Os12t0120500-01;Name=Os12t0120500-01;Locus_id=Os12g0120500;Note=Protein of unknown function DUF567 family protein.;Transcript_evidence=AK103389 (DDBJ%2C Best hit);ORF_evidence=B9G937 (UniProt);InterPro=Tubby%2C C-terminal (IPR000007),Protein of unknown function DUF567 (IPR007612);NIAS_FLcDNA=J033127K18;Expression=AK103389;TENOR=Os12t0120500-01;KEGG=Os12t0120500-01
Chr12	irgsp1_rep	five_prime_UTR	976982	977096	.	-	.	Parent=Os12t0120500-01
Chr12	irgsp1_rep	CDS	976721	976981	.	-	0	Parent=Os12t0120500-01
Chr12	irgsp1_rep	CDS	975295	975720	.	-	0	Parent=Os12t0120500-01
Chr12	irgsp1_rep	three_prime_UTR	975104	975294	.	-	.	Parent=Os12t0120500-01
Chr12	irgsp1_rep	mRNA	988599	989874	.	-	.	ID=Os12t0121000-01;Name=Os12t0121000-01;Locus_id=Os12g0121000;Note=Conserved hypothetical protein.;Transcript_evidence=AK068049 (DDBJ%2C Best hit);ORF_evidence=A2ZHJ5 (UniProt);NIAS_FLcDNA=J013134H19;Expression=AK068049;TENOR=Os12t0121000-01;KEGG=Os12t0121000-01
Chr12	irgsp1_rep	five_prime_UTR	989596	989874	.	-	.	Parent=Os12t0121000-01
Chr12	irgsp1_rep	five_prime_UTR	989290	989308	.	-	.	Parent=Os12t0121000-01
Chr12	irgsp1_rep	CDS	989196	989289	.	-	0	Parent=Os12t0121000-01
Chr12	irgsp1_rep	CDS	988809	989101	.	-	2	Parent=Os12t0121000-01
Chr12	irgsp1_rep	three_prime_UTR	988599	988808	.	-	.	Parent=Os12t0121000-01
Chr12	irgsp1_rep	mRNA	991532	994692	.	-	.	ID=Os12t0121100-01;Name=Os12t0121100-01;Locus_id=Os12g0121100;CGSNL Gene Symbol=RLCK359;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 359;Oryzabase Gene Symbol Synonym(s)=OsRLCK359;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 359;Note=Similar to Serine/threonine-protein kinase NAK.;Transcript_evidence=AK058504 (DDBJ%2C Best hit);ORF_evidence=B4F8X2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-016-F09;Oryzabase=19029;TENOR=Os12t0121100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	994417	994692	.	-	0	Parent=Os12t0121100-01
Chr12	irgsp1_rep	CDS	993628	993763	.	-	0	Parent=Os12t0121100-01
Chr12	irgsp1_rep	CDS	992709	992845	.	-	2	Parent=Os12t0121100-01
Chr12	irgsp1_rep	CDS	992470	992593	.	-	0	Parent=Os12t0121100-01
Chr12	irgsp1_rep	CDS	991833	992287	.	-	2	Parent=Os12t0121100-01
Chr12	irgsp1_rep	three_prime_UTR	991532	991832	.	-	.	Parent=Os12t0121100-01
Chr12	irgsp1_rep	mRNA	1001965	1011068	.	+	.	ID=Os12t0121150-00;Name=Os12t0121150-00;Locus_id=Os12g0121150;Note=Hypothetical gene.;Transcript_evidence=AK240726 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;TENOR=Os12t0121150-00;KEGG=Os12t0121150-00
Chr12	irgsp1_rep	five_prime_UTR	1001965	1002088	.	+	.	Parent=Os12t0121150-00
Chr12	irgsp1_rep	five_prime_UTR	1005667	1006094	.	+	.	Parent=Os12t0121150-00
Chr12	irgsp1_rep	five_prime_UTR	1006478	1006600	.	+	.	Parent=Os12t0121150-00
Chr12	irgsp1_rep	five_prime_UTR	1006682	1006747	.	+	.	Parent=Os12t0121150-00
Chr12	irgsp1_rep	five_prime_UTR	1007235	1007355	.	+	.	Parent=Os12t0121150-00
Chr12	irgsp1_rep	five_prime_UTR	1007542	1007609	.	+	.	Parent=Os12t0121150-00
Chr12	irgsp1_rep	five_prime_UTR	1007798	1007869	.	+	.	Parent=Os12t0121150-00
Chr12	irgsp1_rep	five_prime_UTR	1008402	1009230	.	+	.	Parent=Os12t0121150-00
Chr12	irgsp1_rep	five_prime_UTR	1010592	1010813	.	+	.	Parent=Os12t0121150-00
Chr12	irgsp1_rep	CDS	1010814	1011068	.	+	0	Parent=Os12t0121150-00
Chr12	irgsp1_rep	mRNA	1001968	1004041	.	-	.	ID=Os12t0121200-01;Name=Os12t0121200-01;Locus_id=Os12g0121200;Note=Conserved hypothetical protein.;Transcript_evidence=AK099804 (DDBJ%2C Best hit);ORF_evidence=Q8RUU3 (UniProt);NIAS_FLcDNA=J013098C19;TENOR=Os12t0121200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	1003006	1004041	.	-	.	Parent=Os12t0121200-01
Chr12	irgsp1_rep	CDS	1002897	1003005	.	-	0	Parent=Os12t0121200-01
Chr12	irgsp1_rep	CDS	1002464	1002657	.	-	2	Parent=Os12t0121200-01
Chr12	irgsp1_rep	three_prime_UTR	1001968	1002463	.	-	.	Parent=Os12t0121200-01
Chr12	irgsp1_rep	mRNA	1005449	1011140	.	-	.	ID=Os12t0121300-01;Name=Os12t0121300-01;Locus_id=Os12g0121300;Oryzabase Gene Name Synonym(s)=Ethanolamine-phosphate cytidylyltransferase;Note=Similar to Phosphoethanolamine cytidylyltransferase.;Transcript_evidence=AK068868 (DDBJ%2C Best hit),AK099644 (DDBJ%2C Best hit);ORF_evidence=Q84X92 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: catalytic activity (GO:0003824),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=Cytidylyltransferase (IPR004820),Cytidyltransferase-related (IPR004821),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J023002G17,J013062A17;Oryzabase=20159;Expression=AK068868;TENOR=Os12t0121300-01;KEGG=Os12t0121300-01 (EC:2.7.7.14)
Chr12	irgsp1_rep	five_prime_UTR	1010927	1011140	.	-	.	Parent=Os12t0121300-01
Chr12	irgsp1_rep	CDS	1010592	1010926	.	-	0	Parent=Os12t0121300-01
Chr12	irgsp1_rep	CDS	1008995	1009230	.	-	1	Parent=Os12t0121300-01
Chr12	irgsp1_rep	CDS	1008402	1008583	.	-	2	Parent=Os12t0121300-01
Chr12	irgsp1_rep	CDS	1007798	1007869	.	-	0	Parent=Os12t0121300-01
Chr12	irgsp1_rep	CDS	1007542	1007609	.	-	0	Parent=Os12t0121300-01
Chr12	irgsp1_rep	CDS	1007235	1007355	.	-	1	Parent=Os12t0121300-01
Chr12	irgsp1_rep	CDS	1006682	1006747	.	-	0	Parent=Os12t0121300-01
Chr12	irgsp1_rep	CDS	1006478	1006600	.	-	0	Parent=Os12t0121300-01
Chr12	irgsp1_rep	CDS	1006023	1006094	.	-	0	Parent=Os12t0121300-01
Chr12	irgsp1_rep	three_prime_UTR	1005449	1006022	.	-	.	Parent=Os12t0121300-01
Chr12	irgsp1_rep	mRNA	1012305	1015316	.	-	.	ID=Os12t0121400-00;Name=Os12t0121400-00;Locus_id=Os12g0121400;Note=Snf7 family protein.;Transcript_evidence=CU405869 (DDBJ%2C Best hit);ORF_evidence=NP_001078468.1 (RefSeq);GO=Biological Process: protein transport (GO:0015031);InterPro=Snf7 (IPR005024);TENOR=Os12t0121400-00;KEGG=Os12t0121400-00
Chr12	irgsp1_rep	five_prime_UTR	1015122	1015316	.	-	.	Parent=Os12t0121400-00
Chr12	irgsp1_rep	CDS	1015032	1015121	.	-	0	Parent=Os12t0121400-00
Chr12	irgsp1_rep	CDS	1013989	1014088	.	-	0	Parent=Os12t0121400-00
Chr12	irgsp1_rep	CDS	1013384	1013469	.	-	2	Parent=Os12t0121400-00
Chr12	irgsp1_rep	CDS	1013188	1013279	.	-	0	Parent=Os12t0121400-00
Chr12	irgsp1_rep	CDS	1012792	1012906	.	-	1	Parent=Os12t0121400-00
Chr12	irgsp1_rep	CDS	1012442	1012609	.	-	0	Parent=Os12t0121400-00
Chr12	irgsp1_rep	three_prime_UTR	1012305	1012441	.	-	.	Parent=Os12t0121400-00
Chr12	irgsp1_rep	mRNA	1018201	1021176	.	+	.	ID=Os12t0121600-01;Name=Os12t0121600-01;Locus_id=Os12g0121600;CGSNL Gene Symbol=CHX9;CGSNL Gene Name=CATION/H+ EXCHANGER  9;Oryzabase Gene Symbol Synonym(s)=OsCHX09%2C CHX09%2C OsCHX9;Oryzabase Gene Name Synonym(s)=cation/H+ exchanger  9;Note=Cation/H+ exchanger domain containing protein.;Transcript_evidence=AK072782 (DDBJ%2C Best hit);ORF_evidence=Q2RB63 (UniProt);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: solute:hydrogen antiporter activity (GO:0015299);InterPro=Cation/H+ exchanger (IPR006153);NIAS_FLcDNA=J023142C01;Oryzabase=22369;Expression=AK072782;TENOR=Os12t0121600-01;KEGG=Os12t0121600-01
Chr12	irgsp1_rep	five_prime_UTR	1018201	1018277	.	+	.	Parent=Os12t0121600-01
Chr12	irgsp1_rep	CDS	1018278	1019540	.	+	0	Parent=Os12t0121600-01
Chr12	irgsp1_rep	CDS	1019626	1020882	.	+	0	Parent=Os12t0121600-01
Chr12	irgsp1_rep	three_prime_UTR	1020883	1021176	.	+	.	Parent=Os12t0121600-01
Chr12	irgsp1_rep	mRNA	1043608	1047116	.	+	.	ID=Os12t0122000-01;Name=Os12t0122000-01;Locus_id=Os12g0122000;RAP-DB Gene Symbol Synonym(s)=OsSCR2%2C OsSCR;RAP-DB Gene Name Synonym(s)=SCARECROW;CGSNL Gene Symbol=SCR;CGSNL Gene Name=SCARECROW GENE;Oryzabase Gene Symbol Synonym(s)=OsSCR%2C OsSCR2%2C SCR2%2C OsGRAS-51%2C OsGRAS51%2C GRAS-51%2C GRAS51;Oryzabase Gene Name Synonym(s)=rice SCARECROW gene%2C SCARECROW%2C Protein SCARECROW 2%2C GRAS protein 51;Note=Transcription factor%2C Asymmetric division of the cortex/endodermis progenitor cell in the root%2C Formation of root endodermis and leaf stomata;Transcript_evidence=AK243131;ORF_evidence=Q2QYF3;InterPro=Transcription factor GRAS (IPR005202);NIAS_FLcDNA=J100030A12;Manual Curation=February 20%2C 2018;Literature_PMID=17446396,25352666,12974810;Oryzabase=3119;TENOR=Os12t0122000-01;KEGG=Os12t0122000-01
Chr12	irgsp1_rep	five_prime_UTR	1043608	1043714	.	+	.	Parent=Os12t0122000-01
Chr12	irgsp1_rep	CDS	1043715	1045255	.	+	0	Parent=Os12t0122000-01
Chr12	irgsp1_rep	CDS	1046368	1046809	.	+	1	Parent=Os12t0122000-01
Chr12	irgsp1_rep	three_prime_UTR	1046810	1047116	.	+	.	Parent=Os12t0122000-01
Chr12	irgsp1_rep	mRNA	1052828	1053873	.	+	.	ID=Os12t0122100-01;Name=Os12t0122100-01;Locus_id=Os12g0122100;Note=Protein of unknown function DUF607 family protein.;Transcript_evidence=AK287758 (DDBJ%2C Best hit);ORF_evidence=Q2QYF2 (UniProt);InterPro=Coiled-coil domain containing protein 109%2C C-terminal (IPR006769);NIAS_FLcDNA=J065162E17;TENOR=Os12t0122100-01;KEGG=Os12t0122100-01
Chr12	irgsp1_rep	five_prime_UTR	1052828	1052852	.	+	.	Parent=Os12t0122100-01
Chr12	irgsp1_rep	CDS	1052853	1053245	.	+	0	Parent=Os12t0122100-01
Chr12	irgsp1_rep	CDS	1053352	1053807	.	+	0	Parent=Os12t0122100-01
Chr12	irgsp1_rep	three_prime_UTR	1053808	1053873	.	+	.	Parent=Os12t0122100-01
Chr12	irgsp1_rep	mRNA	1075029	1080393	.	-	.	ID=Os12t0122400-01;Name=Os12t0122400-01;Locus_id=Os12g0122400;CGSNL Gene Symbol=GAUT19;CGSNL Gene Name=GALACTURONOSYLTRANSFERASE 19;Oryzabase Gene Symbol Synonym(s)=OsGAUT19;Oryzabase Gene Name Synonym(s)=galacturonosyltransferase 19;Note=Hypothetical conserved gene.;Transcript_evidence=AK288858 (DDBJ%2C Best hit);ORF_evidence=B9GBL4 (UniProt);NIAS_FLcDNA=J090076F15;Oryzabase=23260;TENOR=Os12t0122400-01;KEGG=Os12t0122400-01
Chr12	irgsp1_rep	five_prime_UTR	1075546	1080393	.	-	.	Parent=Os12t0122400-01
Chr12	irgsp1_rep	CDS	1075291	1075545	.	-	0	Parent=Os12t0122400-01
Chr12	irgsp1_rep	three_prime_UTR	1075029	1075290	.	-	.	Parent=Os12t0122400-01
Chr12	irgsp1_rep	mRNA	1074545	1075294	.	-	.	ID=Os12t0122400-02;Name=Os12t0122400-02;Locus_id=Os12g0122400;CGSNL Gene Symbol=GAUT19;CGSNL Gene Name=GALACTURONOSYLTRANSFERASE 19;Oryzabase Gene Symbol Synonym(s)=OsGAUT19;Oryzabase Gene Name Synonym(s)=galacturonosyltransferase 19;Note=Similar to Glycosyl transferase family 8 protein%2C expressed.;Transcript_evidence=AK111030 (DDBJ%2C Best hit);ORF_evidence=Q2QYE9 (UniProt);NIAS_FLcDNA=002-174-H08;Oryzabase=23260;Expression=AK111030;TENOR=Os12t0122400-02;KEGG=Os12t0122400-02
Chr12	irgsp1_rep	five_prime_UTR	1075096	1075294	.	-	.	Parent=Os12t0122400-02
Chr12	irgsp1_rep	CDS	1074951	1075095	.	-	0	Parent=Os12t0122400-02
Chr12	irgsp1_rep	CDS	1074810	1074850	.	-	2	Parent=Os12t0122400-02
Chr12	irgsp1_rep	CDS	1074588	1074695	.	-	0	Parent=Os12t0122400-02
Chr12	irgsp1_rep	three_prime_UTR	1074545	1074587	.	-	.	Parent=Os12t0122400-02
Chr12	irgsp1_rep	mRNA	1093760	1096549	.	-	.	ID=Os12t0123100-01;Name=Os12t0123100-01;Locus_id=Os12g0123100;Note=Similar to EMB2748.;Transcript_evidence=AK070039 (DDBJ%2C Best hit);ORF_evidence=B6SKC7 (UniProt);NIAS_FLcDNA=J023037B21;Expression=AK070039;TENOR=Os12t0123100-01;KEGG=Os12t0123100-01
Chr12	irgsp1_rep	five_prime_UTR	1096520	1096549	.	-	.	Parent=Os12t0123100-01
Chr12	irgsp1_rep	CDS	1096458	1096519	.	-	0	Parent=Os12t0123100-01
Chr12	irgsp1_rep	CDS	1095936	1095957	.	-	1	Parent=Os12t0123100-01
Chr12	irgsp1_rep	CDS	1095735	1095851	.	-	0	Parent=Os12t0123100-01
Chr12	irgsp1_rep	CDS	1095203	1095313	.	-	0	Parent=Os12t0123100-01
Chr12	irgsp1_rep	CDS	1094820	1094963	.	-	0	Parent=Os12t0123100-01
Chr12	irgsp1_rep	CDS	1094520	1094732	.	-	0	Parent=Os12t0123100-01
Chr12	irgsp1_rep	CDS	1094128	1094337	.	-	0	Parent=Os12t0123100-01
Chr12	irgsp1_rep	three_prime_UTR	1093760	1094127	.	-	.	Parent=Os12t0123100-01
Chr12	irgsp1_rep	mRNA	1097476	1098442	.	+	.	ID=Os12t0123200-01;Name=Os12t0123200-01;Locus_id=Os12g0123200;CGSNL Gene Symbol=GSTU52;CGSNL Gene Name=TAU GLUTATHIONE S-TRANSFERASE 52;Oryzabase Gene Symbol Synonym(s)=OsGSTU52;Oryzabase Gene Name Synonym(s)=glutathione transferase U12;Note=Glutathione S-transferase GST 7 (EC 2.5.1.18).;Transcript_evidence=AK240983 (DDBJ%2C Best hit);ORF_evidence=A3CEH5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal (IPR004046),Glutathione S-transferase%2C C-terminal-like (IPR010987),Thioredoxin-like fold (IPR012336),Glutathione S-transferase/chloride channel%2C C-terminal (IPR017933);NIAS_FLcDNA=J065050H09;Oryzabase=9569;TENOR=Os12t0123200-01;KEGG=Os12t0123200-01 (EC:2.5.1.18)
Chr12	irgsp1_rep	five_prime_UTR	1097476	1097622	.	+	.	Parent=Os12t0123200-01
Chr12	irgsp1_rep	CDS	1097623	1097883	.	+	0	Parent=Os12t0123200-01
Chr12	irgsp1_rep	CDS	1097952	1098302	.	+	0	Parent=Os12t0123200-01
Chr12	irgsp1_rep	three_prime_UTR	1098303	1098442	.	+	.	Parent=Os12t0123200-01
Chr12	irgsp1_rep	mRNA	1098939	1101025	.	-	.	ID=Os12t0123300-00;Name=Os12t0123300-00;Locus_id=Os12g0123300;Note=RNA recognition motif domain domain containing protein.;Transcript_evidence=BT066791 (DDBJ);ORF_evidence=Q2QYE3 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);TENOR=Os12t0123300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	1100670	1101025	.	-	0	Parent=Os12t0123300-00
Chr12	irgsp1_rep	CDS	1100337	1100551	.	-	1	Parent=Os12t0123300-00
Chr12	irgsp1_rep	CDS	1100212	1100231	.	-	2	Parent=Os12t0123300-00
Chr12	irgsp1_rep	three_prime_UTR	1100155	1100211	.	-	.	Parent=Os12t0123300-00
Chr12	irgsp1_rep	three_prime_UTR	1099568	1100074	.	-	.	Parent=Os12t0123300-00
Chr12	irgsp1_rep	three_prime_UTR	1098939	1099128	.	-	.	Parent=Os12t0123300-00
Chr12	irgsp1_rep	mRNA	1107406	1110538	.	+	.	ID=Os12t0123500-01;Name=Os12t0123500-01;Locus_id=Os12g0123500;Note=Similar to Apyrase precursor (EC 3.6.1.5) (ATP-diphosphatase) (Adenosine diphosphatase) (ADPase) (ATP-diphosphohydrolase).;Transcript_evidence=AK072692 (DDBJ%2C Best hit);ORF_evidence=Q2RB47 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Nucleoside phosphatase GDA1/CD39 (IPR000407);NIAS_FLcDNA=J023140I22;Expression=AK072692;TENOR=Os12t0123500-01;KEGG=Os12t0123500-01 (EC:3.6.1.5%2C EC:3.6.1.6)
Chr12	irgsp1_rep	five_prime_UTR	1107406	1107432	.	+	.	Parent=Os12t0123500-01
Chr12	irgsp1_rep	CDS	1107433	1107675	.	+	0	Parent=Os12t0123500-01
Chr12	irgsp1_rep	CDS	1107942	1108070	.	+	0	Parent=Os12t0123500-01
Chr12	irgsp1_rep	CDS	1108313	1108369	.	+	0	Parent=Os12t0123500-01
Chr12	irgsp1_rep	CDS	1108502	1108800	.	+	0	Parent=Os12t0123500-01
Chr12	irgsp1_rep	CDS	1109079	1109170	.	+	1	Parent=Os12t0123500-01
Chr12	irgsp1_rep	CDS	1109315	1109529	.	+	2	Parent=Os12t0123500-01
Chr12	irgsp1_rep	CDS	1109741	1109924	.	+	0	Parent=Os12t0123500-01
Chr12	irgsp1_rep	CDS	1110081	1110217	.	+	2	Parent=Os12t0123500-01
Chr12	irgsp1_rep	three_prime_UTR	1110218	1110538	.	+	.	Parent=Os12t0123500-01
Chr12	irgsp1_rep	mRNA	1111714	1134301	.	+	.	ID=Os12t0123600-01;Name=Os12t0123600-01;Locus_id=Os12g0123600;Note=Similar to GDA1/CD39 family protein.;Transcript_evidence=AK100760 (DDBJ%2C Best hit);ORF_evidence=Q2RB41 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Nucleoside phosphatase GDA1/CD39 (IPR000407);NIAS_FLcDNA=J023119H05;TENOR=Os12t0123600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	1111714	1111776	.	+	.	Parent=Os12t0123600-01
Chr12	irgsp1_rep	CDS	1111777	1111929	.	+	0	Parent=Os12t0123600-01
Chr12	irgsp1_rep	CDS	1131047	1131175	.	+	0	Parent=Os12t0123600-01
Chr12	irgsp1_rep	CDS	1131953	1131997	.	+	0	Parent=Os12t0123600-01
Chr12	irgsp1_rep	three_prime_UTR	1131998	1132009	.	+	.	Parent=Os12t0123600-01
Chr12	irgsp1_rep	three_prime_UTR	1132209	1132388	.	+	.	Parent=Os12t0123600-01
Chr12	irgsp1_rep	three_prime_UTR	1132637	1132728	.	+	.	Parent=Os12t0123600-01
Chr12	irgsp1_rep	three_prime_UTR	1133143	1134301	.	+	.	Parent=Os12t0123600-01
Chr12	irgsp1_rep	mRNA	1139026	1141362	.	+	.	ID=Os12t0123700-01;Name=Os12t0123700-01;Locus_id=Os12g0123700;RAP-DB Gene Symbol Synonym(s)=NAC131%2C ONAC131;RAP-DB Gene Name Synonym(s)=NAC DOMAIN-CONTAINING PROTEIN 131%2C NAC domain-containing protein 131;CGSNL Gene Symbol=NAC131;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 131;Oryzabase Gene Symbol Synonym(s)=ONAC131;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 131;Note=NAC domain containing transcription factor%2C Abiotic and biotic stress response;Transcript_evidence=Inferred from literature;ORF_evidence=Q2QYD5;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=NAC domain (IPR003441);Manual Curation=April 10%2C 2015;Literature_PMID=18813954,20600702;Oryzabase=15891;TENOR=Os12t0123700-00
Chr12	irgsp1_rep	five_prime_UTR	1139026	1139361	.	+	.	Parent=Os12t0123700-01
Chr12	irgsp1_rep	CDS	1139362	1139533	.	+	0	Parent=Os12t0123700-01
Chr12	irgsp1_rep	CDS	1139661	1139968	.	+	2	Parent=Os12t0123700-01
Chr12	irgsp1_rep	CDS	1140234	1140935	.	+	0	Parent=Os12t0123700-01
Chr12	irgsp1_rep	three_prime_UTR	1140936	1141362	.	+	.	Parent=Os12t0123700-01
Chr12	irgsp1_rep	mRNA	1146995	1148742	.	+	.	ID=Os12t0123800-01;Name=Os12t0123800-01;Locus_id=Os12g0123800;CGSNL Gene Symbol=ONAC300;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 300;Oryzabase Gene Symbol Synonym(s)=ONAC077%2C NAC77%2C NAC300%2C ONAC132%2C NAC132%2C DLN250%2C OsDLN250;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 30%2C NAC domain-containing protein 77%2C NAC domain-containing protein 132%2C DLN repressor 250%2C DLN motif protein 250;Note=No apical meristem (NAM) protein domain containing protein.;Transcript_evidence=AK287666 (DDBJ%2C Best hit);ORF_evidence=Q5CD17 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=J065117E22;Oryzabase=6076;TENOR=Os12t0123800-01;KEGG=Os12t0123800-01
Chr12	irgsp1_rep	five_prime_UTR	1146995	1147147	.	+	.	Parent=Os12t0123800-01
Chr12	irgsp1_rep	CDS	1147148	1147343	.	+	0	Parent=Os12t0123800-01
Chr12	irgsp1_rep	CDS	1147460	1148454	.	+	2	Parent=Os12t0123800-01
Chr12	irgsp1_rep	three_prime_UTR	1148455	1148742	.	+	.	Parent=Os12t0123800-01
Chr12	irgsp1_rep	mRNA	1151632	1155729	.	-	.	ID=Os12t0123900-01;Name=Os12t0123900-01;Locus_id=Os12g0123900;Note=Conserved hypothetical protein.;Transcript_evidence=AK061862 (DDBJ%2C Best hit);ORF_evidence=B8BLS9 (UniProt);NIAS_FLcDNA=001-040-G12;Expression=AK061862;TENOR=Os12t0123900-01;KEGG=Os12t0123900-01
Chr12	irgsp1_rep	five_prime_UTR	1155616	1155729	.	-	.	Parent=Os12t0123900-01
Chr12	irgsp1_rep	CDS	1155399	1155508	.	-	0	Parent=Os12t0123900-01
Chr12	irgsp1_rep	CDS	1153559	1153661	.	-	1	Parent=Os12t0123900-01
Chr12	irgsp1_rep	CDS	1153385	1153444	.	-	0	Parent=Os12t0123900-01
Chr12	irgsp1_rep	CDS	1153025	1153087	.	-	0	Parent=Os12t0123900-01
Chr12	irgsp1_rep	CDS	1152712	1152909	.	-	0	Parent=Os12t0123900-01
Chr12	irgsp1_rep	CDS	1152542	1152638	.	-	0	Parent=Os12t0123900-01
Chr12	irgsp1_rep	CDS	1152247	1152461	.	-	2	Parent=Os12t0123900-01
Chr12	irgsp1_rep	CDS	1151950	1152042	.	-	0	Parent=Os12t0123900-01
Chr12	irgsp1_rep	three_prime_UTR	1151632	1151949	.	-	.	Parent=Os12t0123900-01
Chr12	irgsp1_rep	mRNA	1156635	1158213	.	+	.	ID=Os12t0124000-01;Name=Os12t0124000-01;Locus_id=Os12g0124000;Note=Similar to FHA domain containing protein%2C expressed.;Transcript_evidence=AK059861 (DDBJ%2C Best hit);ORF_evidence=Q2QYC9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Forkhead-associated (FHA) domain (IPR000253),SMAD/FHA domain (IPR008984);NIAS_FLcDNA=006-207-C05;Expression=AK059861;TENOR=Os12t0124000-01;KEGG=Os12t0124000-01
Chr12	irgsp1_rep	five_prime_UTR	1156635	1156658	.	+	.	Parent=Os12t0124000-01
Chr12	irgsp1_rep	CDS	1156659	1157088	.	+	0	Parent=Os12t0124000-01
Chr12	irgsp1_rep	CDS	1157320	1157384	.	+	2	Parent=Os12t0124000-01
Chr12	irgsp1_rep	CDS	1157507	1157570	.	+	0	Parent=Os12t0124000-01
Chr12	irgsp1_rep	CDS	1157701	1157829	.	+	2	Parent=Os12t0124000-01
Chr12	irgsp1_rep	CDS	1157989	1158116	.	+	2	Parent=Os12t0124000-01
Chr12	irgsp1_rep	three_prime_UTR	1158117	1158213	.	+	.	Parent=Os12t0124000-01
Chr12	irgsp1_rep	mRNA	1156690	1158309	.	+	.	ID=Os12t0124000-02;Name=Os12t0124000-02;Locus_id=Os12g0124000;Note=Similar to FHA domain containing protein%2C expressed.;Transcript_evidence=AK104144 (DDBJ%2C Best hit);ORF_evidence=Q2QYC9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Forkhead-associated (FHA) domain (IPR000253),SMAD/FHA domain (IPR008984);NIAS_FLcDNA=006-206-A12;TENOR=Os12t0124000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	1156690	1156691	.	+	.	Parent=Os12t0124000-02
Chr12	irgsp1_rep	CDS	1156692	1157088	.	+	0	Parent=Os12t0124000-02
Chr12	irgsp1_rep	CDS	1157320	1157384	.	+	2	Parent=Os12t0124000-02
Chr12	irgsp1_rep	CDS	1157507	1157570	.	+	0	Parent=Os12t0124000-02
Chr12	irgsp1_rep	CDS	1157701	1157847	.	+	2	Parent=Os12t0124000-02
Chr12	irgsp1_rep	CDS	1157989	1158116	.	+	2	Parent=Os12t0124000-02
Chr12	irgsp1_rep	three_prime_UTR	1158117	1158309	.	+	.	Parent=Os12t0124000-02
Chr12	irgsp1_rep	mRNA	1156731	1158378	.	+	.	ID=Os12t0124000-03;Name=Os12t0124000-03;Locus_id=Os12g0124000;Note=Similar to FHA domain containing protein%2C expressed.;Transcript_evidence=AK060098 (DDBJ%2C Best hit);ORF_evidence=Q2QYC9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Forkhead-associated (FHA) domain (IPR000253),SMAD/FHA domain (IPR008984);NIAS_FLcDNA=006-307-G12;TENOR=Os12t0124000-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	1156731	1157088	.	+	0	Parent=Os12t0124000-03
Chr12	irgsp1_rep	CDS	1157320	1157384	.	+	2	Parent=Os12t0124000-03
Chr12	irgsp1_rep	CDS	1157507	1157570	.	+	0	Parent=Os12t0124000-03
Chr12	irgsp1_rep	CDS	1157701	1157847	.	+	2	Parent=Os12t0124000-03
Chr12	irgsp1_rep	CDS	1157989	1158116	.	+	2	Parent=Os12t0124000-03
Chr12	irgsp1_rep	three_prime_UTR	1158117	1158378	.	+	.	Parent=Os12t0124000-03
Chr12	irgsp1_rep	mRNA	1156778	1158369	.	+	.	ID=Os12t0124000-04;Name=Os12t0124000-04;Locus_id=Os12g0124000;Note=Similar to FHA domain containing protein%2C expressed.;Transcript_evidence=AK059321 (DDBJ%2C Best hit);ORF_evidence=Q2QYC9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Forkhead-associated (FHA) domain (IPR000253),SMAD/FHA domain (IPR008984);NIAS_FLcDNA=001-025-H08;TENOR=Os12t0124000-04;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	1156778	1156778	.	+	.	Parent=Os12t0124000-04
Chr12	irgsp1_rep	CDS	1156779	1157088	.	+	0	Parent=Os12t0124000-04
Chr12	irgsp1_rep	CDS	1157320	1157384	.	+	2	Parent=Os12t0124000-04
Chr12	irgsp1_rep	CDS	1157507	1157570	.	+	0	Parent=Os12t0124000-04
Chr12	irgsp1_rep	CDS	1157701	1157847	.	+	2	Parent=Os12t0124000-04
Chr12	irgsp1_rep	CDS	1157989	1158116	.	+	2	Parent=Os12t0124000-04
Chr12	irgsp1_rep	three_prime_UTR	1158117	1158369	.	+	.	Parent=Os12t0124000-04
Chr12	irgsp1_rep	mRNA	1156791	1158438	.	+	.	ID=Os12t0124000-05;Name=Os12t0124000-05;Locus_id=Os12g0124000;Note=Similar to FHA domain containing protein%2C expressed.;Transcript_evidence=AK059747 (DDBJ%2C Best hit);ORF_evidence=Q2QYC9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Forkhead-associated (FHA) domain (IPR000253),SMAD/FHA domain (IPR008984);NIAS_FLcDNA=006-203-A02;Expression=AK059747;TENOR=Os12t0124000-05;KEGG=Os12t0124000-05
Chr12	irgsp1_rep	CDS	1156791	1157088	.	+	0	Parent=Os12t0124000-05
Chr12	irgsp1_rep	CDS	1157320	1157384	.	+	2	Parent=Os12t0124000-05
Chr12	irgsp1_rep	CDS	1157736	1157847	.	+	0	Parent=Os12t0124000-05
Chr12	irgsp1_rep	CDS	1157989	1158116	.	+	2	Parent=Os12t0124000-05
Chr12	irgsp1_rep	three_prime_UTR	1158117	1158438	.	+	.	Parent=Os12t0124000-05
Chr12	irgsp1_rep	mRNA	1159628	1165291	.	-	.	ID=Os12t0124100-01;Name=Os12t0124100-01;Locus_id=Os12g0124100;Note=Conserved hypothetical protein.;Transcript_evidence=AK121549 (DDBJ%2C Best hit);ORF_evidence=B8BLT1 (UniProt);NIAS_FLcDNA=J033032O05;TENOR=Os12t0124100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	1164591	1165291	.	-	.	Parent=Os12t0124100-01
Chr12	irgsp1_rep	five_prime_UTR	1164218	1164462	.	-	.	Parent=Os12t0124100-01
Chr12	irgsp1_rep	CDS	1164130	1164217	.	-	0	Parent=Os12t0124100-01
Chr12	irgsp1_rep	CDS	1163352	1163917	.	-	2	Parent=Os12t0124100-01
Chr12	irgsp1_rep	three_prime_UTR	1159792	1163351	.	-	.	Parent=Os12t0124100-01
Chr12	irgsp1_rep	three_prime_UTR	1159628	1159672	.	-	.	Parent=Os12t0124100-01
Chr12	irgsp1_rep	mRNA	1169749	1170460	.	-	.	ID=Os12t0124200-01;Name=Os12t0124200-01;Locus_id=Os12g0124200;Oryzabase Gene Name Synonym(s)=Ribosomal protein S16;Note=Similar to 40S ribosomal protein S16.;Transcript_evidence=AK121503 (DDBJ%2C Best hit),AK058697 (DDBJ%2C Best hit);ORF_evidence=Q0IQF7 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S9 (IPR000754),Ribosomal protein S5 domain 2-type fold%2C subgroup (IPR014721),Ribosomal protein S5 domain 2-type fold (IPR020568),Ribosomal protein S9%2C conserved site (IPR020574);NIAS_FLcDNA=J033022H12,001-019-B10;Oryzabase=17688;Expression=AK121503;TENOR=Os12t0124200-01;KEGG=Os12t0124200-01
Chr12	irgsp1_rep	five_prime_UTR	1170379	1170460	.	-	.	Parent=Os12t0124200-01
Chr12	irgsp1_rep	CDS	1169929	1170378	.	-	0	Parent=Os12t0124200-01
Chr12	irgsp1_rep	three_prime_UTR	1169749	1169928	.	-	.	Parent=Os12t0124200-01
Chr12	irgsp1_rep	mRNA	1170642	1172382	.	+	.	ID=Os12t0124300-01;Name=Os12t0124300-01;Locus_id=Os12g0124300;Note=Non-protein coding transcript.;Transcript_evidence=AK121957 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J033107M23;TENOR=Os12t0124300-01
Chr12	irgsp1_rep	exon	1170642	1172382	.	+	.	Parent=Os12t0124300-01
Chr12	irgsp1_rep	mRNA	1172749	1175786	.	-	.	ID=Os12t0124400-01;Name=Os12t0124400-01;Locus_id=Os12g0124400;Note=Exostosin-like family protein.;Transcript_evidence=AK071024 (DDBJ%2C Best hit);ORF_evidence=NP_001151894.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);NIAS_FLcDNA=J023077I15;Expression=AK071024;TENOR=Os12t0124400-01;KEGG=Os12t0124400-01
Chr12	irgsp1_rep	five_prime_UTR	1175693	1175786	.	-	.	Parent=Os12t0124400-01
Chr12	irgsp1_rep	CDS	1174778	1175692	.	-	0	Parent=Os12t0124400-01
Chr12	irgsp1_rep	CDS	1173081	1173593	.	-	0	Parent=Os12t0124400-01
Chr12	irgsp1_rep	three_prime_UTR	1172749	1173080	.	-	.	Parent=Os12t0124400-01
Chr12	irgsp1_rep	mRNA	1180372	1181071	.	+	.	ID=Os12t0124500-01;Name=Os12t0124500-01;Locus_id=Os12g0124500;Note=ZF-HD homeobox protein Cys/His-rich dimerisation region domain containing protein.;Transcript_evidence=AK287980 (DDBJ%2C Best hit);ORF_evidence=Q2QYC5 (UniProt);InterPro=ZF-HD homeobox protein%2C Cys/His-rich dimerisation domain (IPR006456);NIAS_FLcDNA=J075083D24;TENOR=Os12t0124500-01;KEGG=Os12t0124500-01
Chr12	irgsp1_rep	five_prime_UTR	1180372	1180461	.	+	.	Parent=Os12t0124500-01
Chr12	irgsp1_rep	CDS	1180462	1180779	.	+	0	Parent=Os12t0124500-01
Chr12	irgsp1_rep	three_prime_UTR	1180780	1181071	.	+	.	Parent=Os12t0124500-01
Chr12	irgsp1_rep	mRNA	1189043	1191508	.	+	.	ID=Os12t0124700-01;Name=Os12t0124700-01;Locus_id=Os12g0124700;CGSNL Gene Symbol=CDC45-1;CGSNL Gene Name=CELL DIVISION  CONTROL 45-1;Oryzabase Gene Symbol Synonym(s)=CDC45%2C OsCDC45%2C CDC45A;Note=CDC45-like protein family protein.;Transcript_evidence=AK073156 (DDBJ%2C Best hit);ORF_evidence=NP_189146.1 (RefSeq);GO=Biological Process: DNA-dependent DNA replication initiation (GO:0006270);InterPro=CDC45 family (IPR003874);NIAS_FLcDNA=J033005P21;Oryzabase=9204;Expression=AK073156;TENOR=Os12t0124700-01;KEGG=Os12t0124700-01
Chr12	irgsp1_rep	five_prime_UTR	1189043	1189143	.	+	.	Parent=Os12t0124700-01
Chr12	irgsp1_rep	CDS	1189144	1190958	.	+	0	Parent=Os12t0124700-01
Chr12	irgsp1_rep	three_prime_UTR	1190959	1191508	.	+	.	Parent=Os12t0124700-01
Chr12	irgsp1_rep	mRNA	1199078	1202198	.	+	.	ID=Os12t0124900-01;Name=Os12t0124900-01;Locus_id=Os12g0124900;RAP-DB Gene Symbol Synonym(s)=TL;RAP-DB Gene Name Synonym(s)=TWISTED LEAF;CGSNL Gene Symbol=TL;CGSNL Gene Name=TWISTED LEAF;Note=Antisense long noncoding RNA%2C Maintainance of leaf blade flattening%2C Suppression of sense gene expression by mediating Chromatin modifications;Transcript_evidence=AK106719;ORF_evidence=NONE;NIAS_FLcDNA=002-114-G05;Manual Curation=February 13%2C 2018;Literature_PMID=29411384;Oryzabase=22323;TENOR=Os12t0124900-01
Chr12	irgsp1_rep	exon	1199078	1199137	.	+	.	Parent=Os12t0124900-01
Chr12	irgsp1_rep	exon	1199205	1199294	.	+	.	Parent=Os12t0124900-01
Chr12	irgsp1_rep	exon	1199530	1199669	.	+	.	Parent=Os12t0124900-01
Chr12	irgsp1_rep	exon	1200814	1202198	.	+	.	Parent=Os12t0124900-01
Chr12	irgsp1_rep	mRNA	1200746	1201965	.	-	.	ID=Os12t0125000-01;Name=Os12t0125000-01;Locus_id=Os12g0125000;RAP-DB Gene Symbol Synonym(s)=OsMYB60;Oryzabase Gene Symbol Synonym(s)=OsMyb11%2C Myb11%2C OsMYB60%2C MYB60;Oryzabase Gene Name Synonym(s)=myb transcription factor 11%2C transcription factor MYB11;Note=R2R3 MYB transcription factor%2C Leaf development;Transcript_evidence=AK061437;ORF_evidence=Q2QYC1;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeobox-like domain superfamily (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930);NIAS_FLcDNA=006-307-B04;Manual Curation=February 13%2C 2018;Literature_PMID=29411384;Oryzabase=10251;Expression=AK061437;TENOR=Os12t0125000-01;KEGG=Os12t0125000-01;Subcellular location=nucleus (GO:0005634)
Chr12	irgsp1_rep	five_prime_UTR	1201858	1201965	.	-	.	Parent=Os12t0125000-01
Chr12	irgsp1_rep	CDS	1201725	1201857	.	-	0	Parent=Os12t0125000-01
Chr12	irgsp1_rep	CDS	1200789	1201591	.	-	2	Parent=Os12t0125000-01
Chr12	irgsp1_rep	three_prime_UTR	1200746	1200788	.	-	.	Parent=Os12t0125000-01
Chr12	irgsp1_rep	mRNA	1211834	1212679	.	+	.	ID=Os12t0125200-01;Name=Os12t0125200-01;Locus_id=Os12g0125200;Note=Conserved hypothetical protein.;Transcript_evidence=AK241053 (DDBJ%2C Best hit);ORF_evidence=NP_001176766.1 (RefSeq);NIAS_FLcDNA=J065062L18;TENOR=Os12t0125200-01;KEGG=Os12t0125200-01
Chr12	irgsp1_rep	five_prime_UTR	1211834	1211888	.	+	.	Parent=Os12t0125200-01
Chr12	irgsp1_rep	CDS	1211889	1212347	.	+	0	Parent=Os12t0125200-01
Chr12	irgsp1_rep	three_prime_UTR	1212348	1212679	.	+	.	Parent=Os12t0125200-01
Chr12	irgsp1_rep	mRNA	1212877	1216296	.	-	.	ID=Os12t0125300-01;Name=Os12t0125300-01;Locus_id=Os12g0125300;Note=Mitotic checkpoint serine/threonine protein kinase%2C Bub1 domain containing protein.;Transcript_evidence=AK102502 (DDBJ%2C Best hit);ORF_evidence=A2ZHN6 (UniProt);InterPro=Mad3/BUB1 homology region 1 (IPR013212),Mitotic checkpoint serine/threonine protein kinase%2C Bub1 (IPR015661);NIAS_FLcDNA=J033095C17;Expression=AK102502;TENOR=Os12t0125300-01;KEGG=Os12t0125300-01
Chr12	irgsp1_rep	five_prime_UTR	1216228	1216296	.	-	.	Parent=Os12t0125300-01
Chr12	irgsp1_rep	CDS	1216103	1216227	.	-	0	Parent=Os12t0125300-01
Chr12	irgsp1_rep	CDS	1215861	1216005	.	-	1	Parent=Os12t0125300-01
Chr12	irgsp1_rep	CDS	1215289	1215446	.	-	0	Parent=Os12t0125300-01
Chr12	irgsp1_rep	CDS	1214829	1214977	.	-	1	Parent=Os12t0125300-01
Chr12	irgsp1_rep	CDS	1213296	1214587	.	-	2	Parent=Os12t0125300-01
Chr12	irgsp1_rep	three_prime_UTR	1212877	1213295	.	-	.	Parent=Os12t0125300-01
Chr12	irgsp1_rep	mRNA	1216713	1220517	.	-	.	ID=Os12t0125400-01;Name=Os12t0125400-01;Locus_id=Os12g0125400;Note=Similar to Homoserine dehydrogenase-like protein.;Transcript_evidence=AK062006 (DDBJ%2C Best hit);ORF_evidence=B8BLT4 (UniProt);GO=Biological Process: cellular amino acid metabolic process (GO:0006520),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: NADP binding (GO:0050661);InterPro=Homoserine dehydrogenase%2C catalytic (IPR001342),Aspartate/homoserine dehydrogenase%2C NAD-binding (IPR005106),NAD(P)-binding domain (IPR016040),Homoserine dehydrogenase%2C conserved site (IPR019811);NIAS_FLcDNA=001-043-D12;Expression=AK062006;TENOR=Os12t0125400-01;KEGG=Os12t0125400-01 (EC:1.1.1.3)
Chr12	irgsp1_rep	five_prime_UTR	1220511	1220517	.	-	.	Parent=Os12t0125400-01
Chr12	irgsp1_rep	CDS	1220400	1220510	.	-	0	Parent=Os12t0125400-01
Chr12	irgsp1_rep	CDS	1220172	1220322	.	-	0	Parent=Os12t0125400-01
Chr12	irgsp1_rep	CDS	1219965	1220042	.	-	2	Parent=Os12t0125400-01
Chr12	irgsp1_rep	CDS	1219657	1219772	.	-	2	Parent=Os12t0125400-01
Chr12	irgsp1_rep	CDS	1219521	1219574	.	-	0	Parent=Os12t0125400-01
Chr12	irgsp1_rep	CDS	1219227	1219314	.	-	0	Parent=Os12t0125400-01
Chr12	irgsp1_rep	CDS	1219045	1219137	.	-	2	Parent=Os12t0125400-01
Chr12	irgsp1_rep	CDS	1218857	1218897	.	-	2	Parent=Os12t0125400-01
Chr12	irgsp1_rep	CDS	1218419	1218472	.	-	0	Parent=Os12t0125400-01
Chr12	irgsp1_rep	CDS	1217624	1217787	.	-	0	Parent=Os12t0125400-01
Chr12	irgsp1_rep	CDS	1217394	1217463	.	-	1	Parent=Os12t0125400-01
Chr12	irgsp1_rep	CDS	1216893	1217027	.	-	0	Parent=Os12t0125400-01
Chr12	irgsp1_rep	three_prime_UTR	1216713	1216892	.	-	.	Parent=Os12t0125400-01
Chr12	irgsp1_rep	mRNA	1220955	1224975	.	-	.	ID=Os12t0125500-01;Name=Os12t0125500-01;Locus_id=Os12g0125500;Note=Similar to MatE family protein%2C expressed.;Transcript_evidence=AK121141 (DDBJ%2C Best hit);ORF_evidence=Q2QYB6 (UniProt);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);NIAS_FLcDNA=J023077H01;TENOR=Os12t0125500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	1224916	1224975	.	-	.	Parent=Os12t0125500-01
Chr12	irgsp1_rep	CDS	1224565	1224915	.	-	0	Parent=Os12t0125500-01
Chr12	irgsp1_rep	three_prime_UTR	1222767	1224564	.	-	.	Parent=Os12t0125500-01
Chr12	irgsp1_rep	three_prime_UTR	1222301	1222604	.	-	.	Parent=Os12t0125500-01
Chr12	irgsp1_rep	three_prime_UTR	1221758	1222200	.	-	.	Parent=Os12t0125500-01
Chr12	irgsp1_rep	three_prime_UTR	1221586	1221672	.	-	.	Parent=Os12t0125500-01
Chr12	irgsp1_rep	three_prime_UTR	1220955	1221429	.	-	.	Parent=Os12t0125500-01
Chr12	irgsp1_rep	mRNA	1221748	1223335	.	+	.	ID=Os12t0125550-00;Name=Os12t0125550-00;Locus_id=Os12g0125550;Note=Hypothetical gene.;Transcript_evidence=BT054648 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0125550-00;KEGG=Os12t0125550-00
Chr12	irgsp1_rep	five_prime_UTR	1221748	1221874	.	+	.	Parent=Os12t0125550-00
Chr12	irgsp1_rep	five_prime_UTR	1221960	1222059	.	+	.	Parent=Os12t0125550-00
Chr12	irgsp1_rep	CDS	1222060	1222214	.	+	0	Parent=Os12t0125550-00
Chr12	irgsp1_rep	CDS	1222311	1222395	.	+	1	Parent=Os12t0125550-00
Chr12	irgsp1_rep	three_prime_UTR	1222396	1222670	.	+	.	Parent=Os12t0125550-00
Chr12	irgsp1_rep	three_prime_UTR	1222759	1223335	.	+	.	Parent=Os12t0125550-00
Chr12	irgsp1_rep	mRNA	1235812	1239153	.	-	.	ID=Os12t0125800-00;Name=Os12t0125800-00;Locus_id=Os12g0125800;Note=Similar to Transparent testa 12 protein.;Transcript_evidence=AK067875 (DDBJ%2C Secondary hit);ORF_evidence=B6SSE0 (UniProt);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);TENOR=Os12t0125800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	1238953	1239153	.	-	0	Parent=Os12t0125800-00
Chr12	irgsp1_rep	CDS	1237512	1237853	.	-	0	Parent=Os12t0125800-00
Chr12	irgsp1_rep	three_prime_UTR	1237312	1237511	.	-	.	Parent=Os12t0125800-00
Chr12	irgsp1_rep	three_prime_UTR	1237058	1237144	.	-	.	Parent=Os12t0125800-00
Chr12	irgsp1_rep	three_prime_UTR	1236844	1236900	.	-	.	Parent=Os12t0125800-00
Chr12	irgsp1_rep	three_prime_UTR	1236505	1236743	.	-	.	Parent=Os12t0125800-00
Chr12	irgsp1_rep	three_prime_UTR	1236300	1236418	.	-	.	Parent=Os12t0125800-00
Chr12	irgsp1_rep	three_prime_UTR	1236130	1236216	.	-	.	Parent=Os12t0125800-00
Chr12	irgsp1_rep	three_prime_UTR	1235812	1235966	.	-	.	Parent=Os12t0125800-00
Chr12	irgsp1_rep	mRNA	1236294	1237913	.	+	.	ID=Os12t0125850-00;Name=Os12t0125850-00;Locus_id=Os12g0125850;Note=Hypothetical gene.;Transcript_evidence=BT054648 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0125850-00;KEGG=Os12t0125850-00
Chr12	irgsp1_rep	five_prime_UTR	1236294	1236416	.	+	.	Parent=Os12t0125850-00
Chr12	irgsp1_rep	five_prime_UTR	1236503	1236536	.	+	.	Parent=Os12t0125850-00
Chr12	irgsp1_rep	CDS	1236537	1236764	.	+	0	Parent=Os12t0125850-00
Chr12	irgsp1_rep	three_prime_UTR	1236765	1236770	.	+	.	Parent=Os12t0125850-00
Chr12	irgsp1_rep	three_prime_UTR	1236940	1237175	.	+	.	Parent=Os12t0125850-00
Chr12	irgsp1_rep	three_prime_UTR	1237272	1237913	.	+	.	Parent=Os12t0125850-00
Chr12	irgsp1_rep	mRNA	1251405	1255942	.	-	.	ID=Os12t0126000-01;Name=Os12t0126000-01;Locus_id=Os12g0126000;Note=Multi antimicrobial extrusion protein MatE family protein.;Transcript_evidence=AK067521 (DDBJ%2C Best hit);ORF_evidence=Q2RB20 (UniProt);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);NIAS_FLcDNA=J013111O08;Expression=AK067521;TENOR=Os12t0126000-01;KEGG=Os12t0126000-01
Chr12	irgsp1_rep	five_prime_UTR	1255930	1255942	.	-	.	Parent=Os12t0126000-01
Chr12	irgsp1_rep	CDS	1255618	1255929	.	-	0	Parent=Os12t0126000-01
Chr12	irgsp1_rep	CDS	1253126	1253667	.	-	0	Parent=Os12t0126000-01
Chr12	irgsp1_rep	CDS	1252897	1252983	.	-	1	Parent=Os12t0126000-01
Chr12	irgsp1_rep	CDS	1252542	1252598	.	-	1	Parent=Os12t0126000-01
Chr12	irgsp1_rep	CDS	1252201	1252439	.	-	1	Parent=Os12t0126000-01
Chr12	irgsp1_rep	CDS	1251993	1252111	.	-	2	Parent=Os12t0126000-01
Chr12	irgsp1_rep	CDS	1251825	1251911	.	-	0	Parent=Os12t0126000-01
Chr12	irgsp1_rep	CDS	1251620	1251700	.	-	0	Parent=Os12t0126000-01
Chr12	irgsp1_rep	three_prime_UTR	1251405	1251619	.	-	.	Parent=Os12t0126000-01
Chr12	irgsp1_rep	mRNA	1251984	1253694	.	+	.	ID=Os12t0126050-00;Name=Os12t0126050-00;Locus_id=Os12g0126050;Note=Hypothetical gene.;Transcript_evidence=BT054648 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0126050-00
Chr12	irgsp1_rep	five_prime_UTR	1251984	1252109	.	+	.	Parent=Os12t0126050-00
Chr12	irgsp1_rep	five_prime_UTR	1252199	1252232	.	+	.	Parent=Os12t0126050-00
Chr12	irgsp1_rep	CDS	1252233	1252459	.	+	0	Parent=Os12t0126050-00
Chr12	irgsp1_rep	CDS	1252782	1252794	.	+	1	Parent=Os12t0126050-00
Chr12	irgsp1_rep	three_prime_UTR	1252795	1253037	.	+	.	Parent=Os12t0126050-00
Chr12	irgsp1_rep	three_prime_UTR	1253115	1253694	.	+	.	Parent=Os12t0126050-00
Chr12	irgsp1_rep	mRNA	1263484	1265642	.	-	.	ID=Os12t0126100-01;Name=Os12t0126100-01;Locus_id=Os12g0126100;RAP-DB Gene Symbol Synonym(s)=OsGELP115;RAP-DB Gene Name Synonym(s)=GDSL esterase/lipase protein 115;CGSNL Gene Symbol=GELP115;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 115;Oryzabase Gene Symbol Synonym(s)=OsGELP115;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 115;Note=GDSL esterase/lipase protein%2C Pollen exine development;Transcript_evidence=Inferred from literature;ORF_evidence=B8BLU1 (indica);GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=SGNH hydrolase superfamily (IPR036514),GDSL lipase/esterase (IPR001087);Manual Curation=February 20%2C 2020;Literature_PMID=32068333;Oryzabase=23470;TENOR=Os12t0126100-00;KEGG=Os12t0126100-00;Subcellular location=peroxisome (GO:0005777)
Chr12	irgsp1_rep	CDS	1265438	1265642	.	-	0	Parent=Os12t0126100-01
Chr12	irgsp1_rep	CDS	1264727	1265350	.	-	2	Parent=Os12t0126100-01
Chr12	irgsp1_rep	CDS	1263484	1263743	.	-	2	Parent=Os12t0126100-01
Chr12	irgsp1_rep	mRNA	1265812	1269154	.	+	.	ID=Os12t0126200-01;Name=Os12t0126200-01;Locus_id=Os12g0126200;Note=Engulfment and cell motility%2C ELM domain containing protein.;Transcript_evidence=AK099983 (DDBJ%2C Best hit);ORF_evidence=NP_566211.1 (RefSeq);GO=Biological Process: phagocytosis (GO:0006909),Cellular Component: cytoskeleton (GO:0005856);InterPro=Engulfment/cell motility%2C ELMO (IPR006816);NIAS_FLcDNA=J013129J01;Expression=AK099983;TENOR=Os12t0126200-01;KEGG=Os12t0126200-01
Chr12	irgsp1_rep	five_prime_UTR	1265812	1265983	.	+	.	Parent=Os12t0126200-01
Chr12	irgsp1_rep	five_prime_UTR	1266607	1266642	.	+	.	Parent=Os12t0126200-01
Chr12	irgsp1_rep	CDS	1266643	1266777	.	+	0	Parent=Os12t0126200-01
Chr12	irgsp1_rep	CDS	1266873	1266981	.	+	0	Parent=Os12t0126200-01
Chr12	irgsp1_rep	CDS	1267117	1267229	.	+	2	Parent=Os12t0126200-01
Chr12	irgsp1_rep	CDS	1267815	1267883	.	+	0	Parent=Os12t0126200-01
Chr12	irgsp1_rep	CDS	1268043	1268158	.	+	0	Parent=Os12t0126200-01
Chr12	irgsp1_rep	CDS	1268276	1268330	.	+	1	Parent=Os12t0126200-01
Chr12	irgsp1_rep	CDS	1268429	1268549	.	+	0	Parent=Os12t0126200-01
Chr12	irgsp1_rep	CDS	1268675	1268817	.	+	2	Parent=Os12t0126200-01
Chr12	irgsp1_rep	CDS	1268903	1269004	.	+	0	Parent=Os12t0126200-01
Chr12	irgsp1_rep	three_prime_UTR	1269005	1269154	.	+	.	Parent=Os12t0126200-01
Chr12	irgsp1_rep	mRNA	1269561	1274766	.	-	.	ID=Os12t0126300-01;Name=Os12t0126300-01;Locus_id=Os12g0126300;RAP-DB Gene Symbol Synonym(s)=OsWRI1-2;RAP-DB Gene Name Synonym(s)=WRINKLED1-2;CGSNL Gene Symbol=WRI1-2;CGSNL Gene Name=WRINKLED1-2;Oryzabase Gene Symbol Synonym(s)=AP2/EREBP155%2C AP2/EREBP#155%2C OsWRI1-2;Oryzabase Gene Name Synonym(s)=APETALA2/ethylene-responsive element binding protein 155%2C WRINKLED 1-2%2C WRI1 like protein 1-2;Note=AP2 domain transcription factor%2C Seed fatty acid synthesis;Transcript_evidence=Inferred from literature;ORF_evidence=Q2QYA7;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-binding transcription factor activity (GO:0003700);InterPro=DNA-binding domain superfamily (IPR016177),AP2/ERF domain superfamily (IPR036955),AP2/ERF domain (IPR001471);Manual Curation=February 25%2C 2020;Literature_PMID=31277505;Oryzabase=10673;TENOR=Os12t0126300-00;KEGG=Os12t0126300-00
Chr12	irgsp1_rep	CDS	1274510	1274766	.	-	0	Parent=Os12t0126300-01
Chr12	irgsp1_rep	CDS	1273852	1273937	.	-	1	Parent=Os12t0126300-01
Chr12	irgsp1_rep	CDS	1273147	1273235	.	-	2	Parent=Os12t0126300-01
Chr12	irgsp1_rep	CDS	1272942	1273066	.	-	0	Parent=Os12t0126300-01
Chr12	irgsp1_rep	CDS	1272492	1272568	.	-	1	Parent=Os12t0126300-01
Chr12	irgsp1_rep	CDS	1269804	1270501	.	-	2	Parent=Os12t0126300-01
Chr12	irgsp1_rep	three_prime_UTR	1269561	1269803	.	-	.	Parent=Os12t0126300-01
Chr12	irgsp1_rep	mRNA	1286504	1288800	.	+	.	ID=Os12t0126600-01;Name=Os12t0126600-01;Locus_id=Os12g0126600;Note=Conserved hypothetical protein.;Transcript_evidence=AK288811 (DDBJ%2C Best hit);ORF_evidence=NP_001174238.1 (RefSeq);NIAS_FLcDNA=J090072B06;TENOR=Os12t0126600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	1286504	1288173	.	+	.	Parent=Os12t0126600-01
Chr12	irgsp1_rep	CDS	1288174	1288308	.	+	0	Parent=Os12t0126600-01
Chr12	irgsp1_rep	three_prime_UTR	1288309	1288800	.	+	.	Parent=Os12t0126600-01
Chr12	irgsp1_rep	mRNA	1292685	1300940	.	-	.	ID=Os12t0126800-01;Name=Os12t0126800-01;Locus_id=Os12g0126800;Note=Protein of unknown function DUF618 domain containing protein.;Transcript_evidence=AK102595 (DDBJ%2C Best hit);ORF_evidence=B8BLU3 (UniProt);InterPro=RNA polymerase II%2C large subunit%2C CTD (IPR006569),Domain of unknown function DUF618 (IPR006903),ENTH/VHS (IPR008942);NIAS_FLcDNA=J033098H20;Expression=AK102595;TENOR=Os12t0126800-01;KEGG=Os12t0126800-01
Chr12	irgsp1_rep	five_prime_UTR	1300785	1300940	.	-	.	Parent=Os12t0126800-01
Chr12	irgsp1_rep	five_prime_UTR	1300592	1300703	.	-	.	Parent=Os12t0126800-01
Chr12	irgsp1_rep	CDS	1300462	1300591	.	-	0	Parent=Os12t0126800-01
Chr12	irgsp1_rep	CDS	1297147	1297394	.	-	2	Parent=Os12t0126800-01
Chr12	irgsp1_rep	CDS	1296863	1297036	.	-	0	Parent=Os12t0126800-01
Chr12	irgsp1_rep	CDS	1296593	1296749	.	-	0	Parent=Os12t0126800-01
Chr12	irgsp1_rep	CDS	1295196	1295335	.	-	2	Parent=Os12t0126800-01
Chr12	irgsp1_rep	CDS	1295064	1295099	.	-	0	Parent=Os12t0126800-01
Chr12	irgsp1_rep	CDS	1293165	1294037	.	-	0	Parent=Os12t0126800-01
Chr12	irgsp1_rep	three_prime_UTR	1292685	1293164	.	-	.	Parent=Os12t0126800-01
Chr12	irgsp1_rep	mRNA	1305134	1307140	.	+	.	ID=Os12t0127100-00;Name=Os12t0127100-00;Locus_id=Os12g0127100;Note=Similar to Nse1 non-SMC component of SMC5-6 complex family protein.;Transcript_evidence=AK101224 (DDBJ%2C Secondary hit);ORF_evidence=Q2QYA0 (UniProt);InterPro=Nse1 non-SMC component of SMC5-6 complex (IPR011513),Zinc finger%2C RING-like (IPR014857);Expression=AK101224;TENOR=Os12t0127100-00;KEGG=Os12t0127100-00
Chr12	irgsp1_rep	five_prime_UTR	1305134	1305138	.	+	.	Parent=Os12t0127100-00
Chr12	irgsp1_rep	CDS	1305139	1305256	.	+	0	Parent=Os12t0127100-00
Chr12	irgsp1_rep	CDS	1305598	1305794	.	+	2	Parent=Os12t0127100-00
Chr12	irgsp1_rep	CDS	1305874	1305954	.	+	0	Parent=Os12t0127100-00
Chr12	irgsp1_rep	CDS	1306081	1306314	.	+	0	Parent=Os12t0127100-00
Chr12	irgsp1_rep	CDS	1306427	1306504	.	+	0	Parent=Os12t0127100-00
Chr12	irgsp1_rep	CDS	1306577	1306879	.	+	0	Parent=Os12t0127100-00
Chr12	irgsp1_rep	three_prime_UTR	1306880	1307140	.	+	.	Parent=Os12t0127100-00
Chr12	irgsp1_rep	mRNA	1309549	1310703	.	-	.	ID=Os12t0127200-01;Name=Os12t0127200-01;Locus_id=Os12g0127200;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK122005 (DDBJ%2C Best hit);ORF_evidence=A2ZHQ7 (UniProt);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=J033110O14;Expression=AK122005;TENOR=Os12t0127200-01;KEGG=Os12t0127200-01
Chr12	irgsp1_rep	five_prime_UTR	1310642	1310703	.	-	.	Parent=Os12t0127200-01
Chr12	irgsp1_rep	CDS	1309814	1310641	.	-	0	Parent=Os12t0127200-01
Chr12	irgsp1_rep	three_prime_UTR	1309549	1309813	.	-	.	Parent=Os12t0127200-01
Chr12	irgsp1_rep	mRNA	1315703	1317344	.	-	.	ID=Os12t0127400-00;Name=Os12t0127400-00;Locus_id=Os12g0127400;Oryzabase Gene Symbol Synonym(s)=OsFbox637%2C Os_F0061;Oryzabase Gene Name Synonym(s)=F-box protein 637;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK241516 (DDBJ%2C Secondary hit);ORF_evidence=NP_001176770.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17398;TENOR=Os12t0127400-00;KEGG=Os12t0127400-00
Chr12	irgsp1_rep	five_prime_UTR	1317249	1317344	.	-	.	Parent=Os12t0127400-00
Chr12	irgsp1_rep	CDS	1317208	1317248	.	-	0	Parent=Os12t0127400-00
Chr12	irgsp1_rep	CDS	1316730	1316886	.	-	1	Parent=Os12t0127400-00
Chr12	irgsp1_rep	CDS	1315753	1316631	.	-	0	Parent=Os12t0127400-00
Chr12	irgsp1_rep	three_prime_UTR	1315703	1315752	.	-	.	Parent=Os12t0127400-00
Chr12	irgsp1_rep	mRNA	1317605	1319863	.	+	.	ID=Os12t0127500-01;Name=Os12t0127500-01;Locus_id=Os12g0127500;Note=Conserved hypothetical protein.;Transcript_evidence=AK064595 (DDBJ%2C Best hit);ORF_evidence=A2ZHQ9 (UniProt);NIAS_FLcDNA=002-112-G10;Expression=AK064595;TENOR=Os12t0127500-01;KEGG=Os12t0127500-01
Chr12	irgsp1_rep	five_prime_UTR	1317605	1317730	.	+	.	Parent=Os12t0127500-01
Chr12	irgsp1_rep	CDS	1317731	1317950	.	+	0	Parent=Os12t0127500-01
Chr12	irgsp1_rep	CDS	1318782	1319656	.	+	2	Parent=Os12t0127500-01
Chr12	irgsp1_rep	three_prime_UTR	1319657	1319863	.	+	.	Parent=Os12t0127500-01
Chr12	irgsp1_rep	mRNA	1320756	1321610	.	-	.	ID=Os12t0127600-00;Name=Os12t0127600-00;Locus_id=Os12g0127600;Note=Similar to Ulp1 protease family%2C C-terminal catalytic domain containing protein%2C expressed.;Transcript_evidence=AK368982 (DDBJ);ORF_evidence=Q2QY95 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase C48%2C SUMO/Sentrin/Ubl1 (IPR003653);TENOR=Os12t0127600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	1320756	1321610	.	-	0	Parent=Os12t0127600-00
Chr12	irgsp1_rep	mRNA	1323547	1326079	.	-	.	ID=Os12t0127650-00;Name=Os12t0127650-00;Locus_id=Os12g0127650;Note=Similar to Ulp1 protease family%2C C-terminal catalytic domain containing protein%2C expressed.;Transcript_evidence=AK242802 (DDBJ%2C Secondary hit);ORF_evidence=Q2QY95 (UniProt);TENOR=Os12t0127650-00;KEGG=Os12t0127650-00
Chr12	irgsp1_rep	five_prime_UTR	1326039	1326079	.	-	.	Parent=Os12t0127650-00
Chr12	irgsp1_rep	CDS	1324546	1326038	.	-	0	Parent=Os12t0127650-00
Chr12	irgsp1_rep	CDS	1324292	1324536	.	-	1	Parent=Os12t0127650-00
Chr12	irgsp1_rep	CDS	1323736	1324208	.	-	2	Parent=Os12t0127650-00
Chr12	irgsp1_rep	three_prime_UTR	1323547	1323735	.	-	.	Parent=Os12t0127650-00
Chr12	irgsp1_rep	mRNA	1332841	1333568	.	+	.	ID=Os12t0127800-01;Name=Os12t0127800-01;Locus_id=Os12g0127800;Oryzabase Gene Symbol Synonym(s)=OsVQ39;Oryzabase Gene Name Synonym(s)=VQ motif-containing protein 39;Note=Similar to VQ motif family protein.;Transcript_evidence=AK242367 (DDBJ%2C Best hit);ORF_evidence=Q2QY94 (UniProt);InterPro=VQ (IPR008889);NIAS_FLcDNA=J080034P09;Oryzabase=13655;TENOR=Os12t0127800-01;KEGG=Os12t0127800-01
Chr12	irgsp1_rep	five_prime_UTR	1332841	1332896	.	+	.	Parent=Os12t0127800-01
Chr12	irgsp1_rep	CDS	1332897	1333472	.	+	0	Parent=Os12t0127800-01
Chr12	irgsp1_rep	three_prime_UTR	1333473	1333568	.	+	.	Parent=Os12t0127800-01
Chr12	irgsp1_rep	mRNA	1337191	1339507	.	-	.	ID=Os12t0127900-00;Name=Os12t0127900-00;Locus_id=Os12g0127900;Note=Similar to Mpv17/PMP22 family protein%2C expressed.;Transcript_evidence=CT835614 (DDBJ%2C Best hit);ORF_evidence=Q2RB03 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Mpv17/PMP22 (IPR007248);TENOR=Os12t0127900-00;KEGG=Os12t0127900-00
Chr12	irgsp1_rep	five_prime_UTR	1339426	1339507	.	-	.	Parent=Os12t0127900-00
Chr12	irgsp1_rep	CDS	1339136	1339425	.	-	0	Parent=Os12t0127900-00
Chr12	irgsp1_rep	CDS	1338918	1339005	.	-	1	Parent=Os12t0127900-00
Chr12	irgsp1_rep	CDS	1338154	1338248	.	-	0	Parent=Os12t0127900-00
Chr12	irgsp1_rep	CDS	1337986	1338058	.	-	1	Parent=Os12t0127900-00
Chr12	irgsp1_rep	CDS	1337768	1337860	.	-	0	Parent=Os12t0127900-00
Chr12	irgsp1_rep	CDS	1337585	1337671	.	-	0	Parent=Os12t0127900-00
Chr12	irgsp1_rep	CDS	1337364	1337444	.	-	0	Parent=Os12t0127900-00
Chr12	irgsp1_rep	three_prime_UTR	1337191	1337363	.	-	.	Parent=Os12t0127900-00
Chr12	irgsp1_rep	mRNA	1342002	1344257	.	+	.	ID=Os12t0128000-01;Name=Os12t0128000-01;Locus_id=Os12g0128000;Oryzabase Gene Symbol Synonym(s)=OsFbox638%2C Os_F0021;Oryzabase Gene Name Synonym(s)=F-box protein 638;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK103867 (DDBJ%2C Best hit);ORF_evidence=Q2RB02 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated domain%2C type 3 (IPR013187),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033149H01;Oryzabase=17399;Expression=AK103867;TENOR=Os12t0128000-01;KEGG=Os12t0128000-01
Chr12	irgsp1_rep	five_prime_UTR	1342002	1342138	.	+	.	Parent=Os12t0128000-01
Chr12	irgsp1_rep	five_prime_UTR	1342575	1342649	.	+	.	Parent=Os12t0128000-01
Chr12	irgsp1_rep	five_prime_UTR	1342753	1342823	.	+	.	Parent=Os12t0128000-01
Chr12	irgsp1_rep	CDS	1342824	1344023	.	+	0	Parent=Os12t0128000-01
Chr12	irgsp1_rep	three_prime_UTR	1344024	1344257	.	+	.	Parent=Os12t0128000-01
Chr12	irgsp1_rep	mRNA	1346233	1348124	.	+	.	ID=Os12t0128200-01;Name=Os12t0128200-01;Locus_id=Os12g0128200;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK109466 (DDBJ%2C Best hit);ORF_evidence=Q2QY91 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-128-A01;Expression=AK109466;TENOR=Os12t0128200-01;KEGG=Os12t0128200-01
Chr12	irgsp1_rep	five_prime_UTR	1346233	1346248	.	+	.	Parent=Os12t0128200-01
Chr12	irgsp1_rep	CDS	1346249	1347009	.	+	0	Parent=Os12t0128200-01
Chr12	irgsp1_rep	CDS	1347064	1348066	.	+	1	Parent=Os12t0128200-01
Chr12	irgsp1_rep	three_prime_UTR	1348067	1348124	.	+	.	Parent=Os12t0128200-01
Chr12	irgsp1_rep	mRNA	1346315	1349174	.	-	.	ID=Os12t0128300-00;Name=Os12t0128300-00;Locus_id=Os12g0128300;Note=Non-protein coding transcript.;Transcript_evidence=EU949302 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0128300-00
Chr12	irgsp1_rep	exon	1348985	1349174	.	-	.	Parent=Os12t0128300-00
Chr12	irgsp1_rep	exon	1346315	1346557	.	-	.	Parent=Os12t0128300-00
Chr12	irgsp1_rep	mRNA	1351874	1353721	.	-	.	ID=Os12t0128450-00;Name=Os12t0128450-00;Locus_id=Os12g0128450;Note=Similar to YDG/SRA domain containing protein.;Transcript_evidence=BT055690 (DDBJ);ORF_evidence=Q2RB00 (UniProt);GO=Biological Process: histone lysine methylation (GO:0034968),Cellular Component: nucleus (GO:0005634),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: histone-lysine N-methyltransferase activity (GO:0018024),Molecular Function: histone binding (GO:0042393);InterPro=SET domain (IPR001214),SRA-YDG (IPR003105),Pre-SET zinc-binding sub-group (IPR003606),Post-SET domain (IPR003616),Pre-SET domain (IPR007728);TENOR=Os12t0128450-00
Chr12	irgsp1_rep	CDS	1351877	1353721	.	-	0	Parent=Os12t0128450-00
Chr12	irgsp1_rep	three_prime_UTR	1351874	1351876	.	-	.	Parent=Os12t0128450-00
Chr12	irgsp1_rep	mRNA	1355062	1357015	.	-	.	ID=Os12t0128600-01;Name=Os12t0128600-01;Locus_id=Os12g0128600;Oryzabase Gene Symbol Synonym(s)=OsSET42%2C SET42%2C SDG734%2C OsSUVH12%2C SUVH12;Oryzabase Gene Name Synonym(s)=SET protein 42%2C SUVH Histone Methyltransferase 12;Note=Zinc finger%2C Tim10/DDP-type family protein.;Transcript_evidence=AK120379 (DDBJ%2C Best hit);ORF_evidence=B6SLJ2 (UniProt);GO=Biological Process: protein targeting to mitochondrion (GO:0006626),Biological Process: protein import into mitochondrial inner membrane (GO:0045039),Cellular Component: mitochondrial intermembrane space protein transporter complex (GO:0042719);InterPro=Mitochondrial inner membrane translocase complex%2C Tim8/9/10/13-zinc finger-like (IPR004217);NIAS_FLcDNA=J013072B16;Oryzabase=13405;Expression=AK120379;TENOR=Os12t0128600-01;KEGG=Os12t0128600-01
Chr12	irgsp1_rep	five_prime_UTR	1356941	1357015	.	-	.	Parent=Os12t0128600-01
Chr12	irgsp1_rep	CDS	1356893	1356940	.	-	0	Parent=Os12t0128600-01
Chr12	irgsp1_rep	CDS	1355241	1355429	.	-	0	Parent=Os12t0128600-01
Chr12	irgsp1_rep	three_prime_UTR	1355062	1355240	.	-	.	Parent=Os12t0128600-01
Chr12	irgsp1_rep	mRNA	1359827	1366366	.	+	.	ID=Os12t0128700-01;Name=Os12t0128700-01;Locus_id=Os12g0128700;Oryzabase Gene Name Synonym(s)=Alpha-L-arabinofuranosidase C-terminus family protein;Note=Similar to Arabinoxylan arabinofuranohydrolase isoenzyme AXAH-II.;Transcript_evidence=AK072576 (DDBJ%2C Best hit);ORF_evidence=B6T9B9 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: L-arabinose metabolic process (GO:0046373),Molecular Function: catalytic activity (GO:0003824),Molecular Function: cation binding (GO:0043169),Molecular Function: alpha-N-arabinofuranosidase activity (GO:0046556);InterPro=Alpha-L-arabinofuranosidase%2C C-terminal (IPR010720),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J023131M13;Oryzabase=19102;Expression=AK072576;TENOR=Os12t0128700-01;KEGG=Os12t0128700-01
Chr12	irgsp1_rep	five_prime_UTR	1359827	1359929	.	+	.	Parent=Os12t0128700-01
Chr12	irgsp1_rep	five_prime_UTR	1360342	1360376	.	+	.	Parent=Os12t0128700-01
Chr12	irgsp1_rep	CDS	1360377	1360565	.	+	0	Parent=Os12t0128700-01
Chr12	irgsp1_rep	CDS	1360721	1360775	.	+	0	Parent=Os12t0128700-01
Chr12	irgsp1_rep	CDS	1361553	1361749	.	+	2	Parent=Os12t0128700-01
Chr12	irgsp1_rep	CDS	1361999	1362120	.	+	0	Parent=Os12t0128700-01
Chr12	irgsp1_rep	CDS	1362206	1362353	.	+	1	Parent=Os12t0128700-01
Chr12	irgsp1_rep	CDS	1362502	1362571	.	+	0	Parent=Os12t0128700-01
Chr12	irgsp1_rep	CDS	1362676	1362821	.	+	2	Parent=Os12t0128700-01
Chr12	irgsp1_rep	CDS	1362937	1362982	.	+	0	Parent=Os12t0128700-01
Chr12	irgsp1_rep	CDS	1363062	1363114	.	+	2	Parent=Os12t0128700-01
Chr12	irgsp1_rep	CDS	1363676	1363820	.	+	0	Parent=Os12t0128700-01
Chr12	irgsp1_rep	CDS	1364524	1364642	.	+	2	Parent=Os12t0128700-01
Chr12	irgsp1_rep	CDS	1364749	1364820	.	+	0	Parent=Os12t0128700-01
Chr12	irgsp1_rep	CDS	1365175	1365278	.	+	0	Parent=Os12t0128700-01
Chr12	irgsp1_rep	CDS	1365418	1365474	.	+	1	Parent=Os12t0128700-01
Chr12	irgsp1_rep	CDS	1365561	1365751	.	+	1	Parent=Os12t0128700-01
Chr12	irgsp1_rep	CDS	1365835	1365980	.	+	2	Parent=Os12t0128700-01
Chr12	irgsp1_rep	CDS	1366093	1366215	.	+	0	Parent=Os12t0128700-01
Chr12	irgsp1_rep	three_prime_UTR	1366216	1366366	.	+	.	Parent=Os12t0128700-01
Chr12	irgsp1_rep	mRNA	1368900	1375574	.	+	.	ID=Os12t0128800-01;Name=Os12t0128800-01;Locus_id=Os12g0128800;Note=Similar to Arabinoxylan arabinofuranohydrolase isoenzyme AXAH-I.;Transcript_evidence=AK103721 (DDBJ%2C Best hit);ORF_evidence=Q9ATV8 (UniProt);GO=Biological Process: L-arabinose metabolic process (GO:0046373),Molecular Function: alpha-N-arabinofuranosidase activity (GO:0046556);InterPro=Alpha-L-arabinofuranosidase%2C C-terminal (IPR010720),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J033138B08;Expression=AK103721;TENOR=Os12t0128800-01;KEGG=Os12t0128800-01
Chr12	irgsp1_rep	five_prime_UTR	1368900	1369455	.	+	.	Parent=Os12t0128800-01
Chr12	irgsp1_rep	CDS	1369456	1369456	.	+	0	Parent=Os12t0128800-01
Chr12	irgsp1_rep	CDS	1369564	1369754	.	+	2	Parent=Os12t0128800-01
Chr12	irgsp1_rep	CDS	1370138	1370259	.	+	0	Parent=Os12t0128800-01
Chr12	irgsp1_rep	CDS	1370359	1370506	.	+	1	Parent=Os12t0128800-01
Chr12	irgsp1_rep	CDS	1370883	1370952	.	+	0	Parent=Os12t0128800-01
Chr12	irgsp1_rep	CDS	1371028	1371173	.	+	2	Parent=Os12t0128800-01
Chr12	irgsp1_rep	CDS	1371259	1371304	.	+	0	Parent=Os12t0128800-01
Chr12	irgsp1_rep	CDS	1371395	1371447	.	+	2	Parent=Os12t0128800-01
Chr12	irgsp1_rep	CDS	1371613	1371763	.	+	0	Parent=Os12t0128800-01
Chr12	irgsp1_rep	CDS	1372229	1372347	.	+	2	Parent=Os12t0128800-01
Chr12	irgsp1_rep	CDS	1372483	1372554	.	+	0	Parent=Os12t0128800-01
Chr12	irgsp1_rep	CDS	1373547	1373650	.	+	0	Parent=Os12t0128800-01
Chr12	irgsp1_rep	CDS	1373945	1374001	.	+	1	Parent=Os12t0128800-01
Chr12	irgsp1_rep	CDS	1374094	1374286	.	+	1	Parent=Os12t0128800-01
Chr12	irgsp1_rep	CDS	1374502	1374645	.	+	0	Parent=Os12t0128800-01
Chr12	irgsp1_rep	CDS	1374968	1375066	.	+	0	Parent=Os12t0128800-01
Chr12	irgsp1_rep	three_prime_UTR	1375067	1375574	.	+	.	Parent=Os12t0128800-01
Chr12	irgsp1_rep	mRNA	1368969	1376236	.	+	.	ID=Os12t0128800-02;Name=Os12t0128800-02;Locus_id=Os12g0128800;Note=Similar to cDNA clone:J033138B08%2C full insert sequence.;Transcript_evidence=AK119404 (DDBJ%2C Best hit);ORF_evidence=Q2QY87 (UniProt);InterPro=Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-132-E09;Expression=AK119404;TENOR=Os12t0128800-02;KEGG=Os12t0128800-02
Chr12	irgsp1_rep	five_prime_UTR	1368969	1369456	.	+	.	Parent=Os12t0128800-02
Chr12	irgsp1_rep	five_prime_UTR	1369564	1369751	.	+	.	Parent=Os12t0128800-02
Chr12	irgsp1_rep	CDS	1369752	1369754	.	+	0	Parent=Os12t0128800-02
Chr12	irgsp1_rep	CDS	1370138	1370259	.	+	0	Parent=Os12t0128800-02
Chr12	irgsp1_rep	CDS	1370359	1370506	.	+	1	Parent=Os12t0128800-02
Chr12	irgsp1_rep	CDS	1370883	1370952	.	+	0	Parent=Os12t0128800-02
Chr12	irgsp1_rep	CDS	1371028	1371173	.	+	2	Parent=Os12t0128800-02
Chr12	irgsp1_rep	CDS	1371259	1371304	.	+	0	Parent=Os12t0128800-02
Chr12	irgsp1_rep	CDS	1371395	1371447	.	+	2	Parent=Os12t0128800-02
Chr12	irgsp1_rep	CDS	1371613	1371763	.	+	0	Parent=Os12t0128800-02
Chr12	irgsp1_rep	CDS	1372483	1372490	.	+	2	Parent=Os12t0128800-02
Chr12	irgsp1_rep	three_prime_UTR	1372491	1372554	.	+	.	Parent=Os12t0128800-02
Chr12	irgsp1_rep	three_prime_UTR	1373547	1373650	.	+	.	Parent=Os12t0128800-02
Chr12	irgsp1_rep	three_prime_UTR	1373945	1374001	.	+	.	Parent=Os12t0128800-02
Chr12	irgsp1_rep	three_prime_UTR	1374094	1374286	.	+	.	Parent=Os12t0128800-02
Chr12	irgsp1_rep	three_prime_UTR	1374502	1374645	.	+	.	Parent=Os12t0128800-02
Chr12	irgsp1_rep	three_prime_UTR	1374968	1376236	.	+	.	Parent=Os12t0128800-02
Chr12	irgsp1_rep	mRNA	1378167	1378700	.	+	.	ID=Os12t0128900-00;Name=Os12t0128900-00;Locus_id=Os12g0128900;Note=Similar to Pectinesterase inhibitor domain containing protein.;Transcript_evidence=EU960562 (DDBJ);ORF_evidence=Q2RAZ5 (UniProt);GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);TENOR=Os12t0128900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	1378167	1378496	.	+	0	Parent=Os12t0128900-00
Chr12	irgsp1_rep	three_prime_UTR	1378497	1378700	.	+	.	Parent=Os12t0128900-00
Chr12	irgsp1_rep	mRNA	1387551	1391270	.	-	.	ID=Os12t0129000-01;Name=Os12t0129000-01;Locus_id=Os12g0129000;Note=Uncharacterised protein family UPF0414 domain containing protein.;Transcript_evidence=AK243479 (DDBJ%2C Best hit);ORF_evidence=NP_001176772.1 (RefSeq);InterPro=Protein of unknown function DUF872%2C transmembrane (IPR008590);NIAS_FLcDNA=J100072M24;TENOR=Os12t0129000-01;KEGG=Os12t0129000-01
Chr12	irgsp1_rep	five_prime_UTR	1391265	1391270	.	-	.	Parent=Os12t0129000-01
Chr12	irgsp1_rep	CDS	1390996	1391264	.	-	0	Parent=Os12t0129000-01
Chr12	irgsp1_rep	CDS	1388533	1388816	.	-	1	Parent=Os12t0129000-01
Chr12	irgsp1_rep	CDS	1388059	1388138	.	-	2	Parent=Os12t0129000-01
Chr12	irgsp1_rep	three_prime_UTR	1387551	1388058	.	-	.	Parent=Os12t0129000-01
Chr12	irgsp1_rep	mRNA	1393078	1393653	.	-	.	ID=Os12t0129100-00;Name=Os12t0129100-00;Locus_id=Os12g0129100;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QY84 (UniProt);GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);TENOR=Os12t0129100-00;KEGG=Os12t0129100-00
Chr12	irgsp1_rep	CDS	1393078	1393653	.	-	0	Parent=Os12t0129100-00
Chr12	irgsp1_rep	mRNA	1397309	1399004	.	+	.	ID=Os12t0129300-01;Name=Os12t0129300-01;Locus_id=Os12g0129300;Note=Similar to Arabinoxylan arabinofuranohydrolase isoenzyme AXAH-II.;Transcript_evidence=AK062739 (DDBJ%2C Best hit);ORF_evidence=Q9ATV7 (UniProt);NIAS_FLcDNA=001-106-F01;Expression=AK062739;TENOR=Os12t0129300-01;KEGG=Os12t0129300-01
Chr12	irgsp1_rep	five_prime_UTR	1397309	1397497	.	+	.	Parent=Os12t0129300-01
Chr12	irgsp1_rep	five_prime_UTR	1398055	1398068	.	+	.	Parent=Os12t0129300-01
Chr12	irgsp1_rep	CDS	1398069	1398242	.	+	0	Parent=Os12t0129300-01
Chr12	irgsp1_rep	CDS	1398714	1398809	.	+	0	Parent=Os12t0129300-01
Chr12	irgsp1_rep	three_prime_UTR	1398810	1399004	.	+	.	Parent=Os12t0129300-01
Chr12	irgsp1_rep	mRNA	1400240	1404684	.	+	.	ID=Os12t0129350-00;Name=Os12t0129350-00;Locus_id=Os12g0129350;Note=Similar to Arabinoxylan arabinofuranohydrolase isoenzyme AXAH-I.;Transcript_evidence=BT041827 (DDBJ);ORF_evidence=Q9ATV8 (UniProt);GO=Biological Process: L-arabinose metabolic process (GO:0046373),Molecular Function: alpha-N-arabinofuranosidase activity (GO:0046556);InterPro=Alpha-L-arabinofuranosidase%2C C-terminal (IPR010720),Glycoside hydrolase%2C superfamily (IPR017853);TENOR=Os12t0129350-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	1400240	1400290	.	+	.	Parent=Os12t0129350-00
Chr12	irgsp1_rep	five_prime_UTR	1400597	1400666	.	+	.	Parent=Os12t0129350-00
Chr12	irgsp1_rep	five_prime_UTR	1401082	1401183	.	+	.	Parent=Os12t0129350-00
Chr12	irgsp1_rep	CDS	1401184	1401228	.	+	0	Parent=Os12t0129350-00
Chr12	irgsp1_rep	CDS	1401321	1401366	.	+	0	Parent=Os12t0129350-00
Chr12	irgsp1_rep	CDS	1401466	1401518	.	+	2	Parent=Os12t0129350-00
Chr12	irgsp1_rep	CDS	1401679	1401823	.	+	0	Parent=Os12t0129350-00
Chr12	irgsp1_rep	CDS	1402309	1402427	.	+	2	Parent=Os12t0129350-00
Chr12	irgsp1_rep	CDS	1402529	1402600	.	+	0	Parent=Os12t0129350-00
Chr12	irgsp1_rep	CDS	1403026	1403132	.	+	0	Parent=Os12t0129350-00
Chr12	irgsp1_rep	CDS	1403438	1403494	.	+	1	Parent=Os12t0129350-00
Chr12	irgsp1_rep	CDS	1403586	1403778	.	+	1	Parent=Os12t0129350-00
Chr12	irgsp1_rep	CDS	1403960	1404117	.	+	0	Parent=Os12t0129350-00
Chr12	irgsp1_rep	CDS	1404566	1404674	.	+	1	Parent=Os12t0129350-00
Chr12	irgsp1_rep	three_prime_UTR	1404675	1404684	.	+	.	Parent=Os12t0129350-00
Chr12	irgsp1_rep	mRNA	1405136	1409433	.	-	.	ID=Os12t0129400-01;Name=Os12t0129400-01;Locus_id=Os12g0129400;Oryzabase Gene Symbol Synonym(s)=OsWD40-192;Note=Similar to predicted protein.;Transcript_evidence=AK241371 (DDBJ%2C Best hit);ORF_evidence=NP_191249.2 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J065154E06;Oryzabase=10873;TENOR=Os12t0129400-01;KEGG=Os12t0129400-01
Chr12	irgsp1_rep	five_prime_UTR	1409258	1409433	.	-	.	Parent=Os12t0129400-01
Chr12	irgsp1_rep	CDS	1409200	1409257	.	-	0	Parent=Os12t0129400-01
Chr12	irgsp1_rep	CDS	1409051	1409106	.	-	2	Parent=Os12t0129400-01
Chr12	irgsp1_rep	CDS	1408787	1408951	.	-	0	Parent=Os12t0129400-01
Chr12	irgsp1_rep	CDS	1408472	1408586	.	-	0	Parent=Os12t0129400-01
Chr12	irgsp1_rep	CDS	1408213	1408312	.	-	2	Parent=Os12t0129400-01
Chr12	irgsp1_rep	CDS	1407904	1408089	.	-	1	Parent=Os12t0129400-01
Chr12	irgsp1_rep	CDS	1407684	1407739	.	-	1	Parent=Os12t0129400-01
Chr12	irgsp1_rep	CDS	1407509	1407596	.	-	2	Parent=Os12t0129400-01
Chr12	irgsp1_rep	CDS	1407358	1407433	.	-	1	Parent=Os12t0129400-01
Chr12	irgsp1_rep	CDS	1406571	1406670	.	-	0	Parent=Os12t0129400-01
Chr12	irgsp1_rep	CDS	1406415	1406466	.	-	2	Parent=Os12t0129400-01
Chr12	irgsp1_rep	CDS	1405831	1405968	.	-	1	Parent=Os12t0129400-01
Chr12	irgsp1_rep	CDS	1405642	1405729	.	-	1	Parent=Os12t0129400-01
Chr12	irgsp1_rep	CDS	1405506	1405559	.	-	0	Parent=Os12t0129400-01
Chr12	irgsp1_rep	three_prime_UTR	1405492	1405505	.	-	.	Parent=Os12t0129400-01
Chr12	irgsp1_rep	three_prime_UTR	1405136	1405403	.	-	.	Parent=Os12t0129400-01
Chr12	irgsp1_rep	mRNA	1412001	1421875	.	+	.	ID=Os12t0129550-00;Name=Os12t0129550-00;Locus_id=Os12g0129550;CGSNL Gene Symbol=DLN251;CGSNL Gene Name=DLN REPRESSOR 251;Oryzabase Gene Symbol Synonym(s)=OsDLN251;Oryzabase Gene Name Synonym(s)=DLN repressor 251%2C DLN motif protein 251;Note=Putative zinc finger CCCH domain-containing protein 64.;Transcript_evidence=A3CEM4 (UniProt);ORF_evidence=A3CEM4 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);Oryzabase=23238;TENOR=Os12t0129550-00
Chr12	irgsp1_rep	CDS	1412001	1412114	.	+	0	Parent=Os12t0129550-00
Chr12	irgsp1_rep	CDS	1412415	1412544	.	+	0	Parent=Os12t0129550-00
Chr12	irgsp1_rep	CDS	1412697	1412747	.	+	2	Parent=Os12t0129550-00
Chr12	irgsp1_rep	CDS	1414518	1414633	.	+	2	Parent=Os12t0129550-00
Chr12	irgsp1_rep	CDS	1417820	1417999	.	+	0	Parent=Os12t0129550-00
Chr12	irgsp1_rep	CDS	1418748	1418939	.	+	0	Parent=Os12t0129550-00
Chr12	irgsp1_rep	CDS	1419534	1419674	.	+	0	Parent=Os12t0129550-00
Chr12	irgsp1_rep	CDS	1419786	1419913	.	+	0	Parent=Os12t0129550-00
Chr12	irgsp1_rep	CDS	1420089	1420263	.	+	1	Parent=Os12t0129550-00
Chr12	irgsp1_rep	CDS	1420665	1420853	.	+	0	Parent=Os12t0129550-00
Chr12	irgsp1_rep	CDS	1421629	1421750	.	+	0	Parent=Os12t0129550-00
Chr12	irgsp1_rep	CDS	1421830	1421875	.	+	1	Parent=Os12t0129550-00
Chr12	irgsp1_rep	mRNA	1434242	1446378	.	-	.	ID=Os12t0129650-01;Name=Os12t0129650-01;Locus_id=Os12g0129650;Note=Similar to cDNA%2C clone: J065154E06%2C full insert sequence.;Transcript_evidence=AK242179 (DDBJ%2C Best hit);ORF_evidence=B7F8R8 (UniProt);NIAS_FLcDNA=J075160G03;TENOR=Os12t0129650-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	1446290	1446378	.	-	.	Parent=Os12t0129650-01
Chr12	irgsp1_rep	five_prime_UTR	1446209	1446217	.	-	.	Parent=Os12t0129650-01
Chr12	irgsp1_rep	CDS	1446162	1446208	.	-	0	Parent=Os12t0129650-01
Chr12	irgsp1_rep	CDS	1445873	1446038	.	-	1	Parent=Os12t0129650-01
Chr12	irgsp1_rep	CDS	1434510	1434527	.	-	0	Parent=Os12t0129650-01
Chr12	irgsp1_rep	three_prime_UTR	1434242	1434509	.	-	.	Parent=Os12t0129650-01
Chr12	irgsp1_rep	mRNA	1437032	1445090	.	+	.	ID=Os12t0129700-01;Name=Os12t0129700-01;Locus_id=Os12g0129700;Oryzabase Gene Symbol Synonym(s)=OsFbox639%2C Os_F0382;Oryzabase Gene Name Synonym(s)=F-box protein 639;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK068675 (DDBJ%2C Best hit);ORF_evidence=Q2QY61 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013158N08;Oryzabase=17400;Expression=AK068675;TENOR=Os12t0129700-01;KEGG=Os12t0129700-01
Chr12	irgsp1_rep	five_prime_UTR	1437032	1438281	.	+	.	Parent=Os12t0129700-01
Chr12	irgsp1_rep	CDS	1438282	1438500	.	+	0	Parent=Os12t0129700-01
Chr12	irgsp1_rep	CDS	1442413	1442727	.	+	0	Parent=Os12t0129700-01
Chr12	irgsp1_rep	CDS	1443442	1443560	.	+	0	Parent=Os12t0129700-01
Chr12	irgsp1_rep	CDS	1444199	1444667	.	+	1	Parent=Os12t0129700-01
Chr12	irgsp1_rep	three_prime_UTR	1444668	1445090	.	+	.	Parent=Os12t0129700-01
Chr12	irgsp1_rep	mRNA	1453035	1455581	.	+	.	ID=Os12t0130100-01;Name=Os12t0130100-01;Locus_id=Os12g0130100;Note=Similar to D-mannose binding lectin family protein%2C expressed.;Transcript_evidence=AK111431 (DDBJ%2C Best hit);ORF_evidence=Q2RAY8 (UniProt);InterPro=Plant organelle RNA recognition domain (IPR021099);NIAS_FLcDNA=002-182-H08;TENOR=Os12t0130100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	1453035	1453937	.	+	.	Parent=Os12t0130100-01
Chr12	irgsp1_rep	CDS	1453938	1454495	.	+	0	Parent=Os12t0130100-01
Chr12	irgsp1_rep	three_prime_UTR	1454496	1455581	.	+	.	Parent=Os12t0130100-01
Chr12	irgsp1_rep	mRNA	1457706	1459747	.	+	.	ID=Os12t0130200-00;Name=Os12t0130200-00;Locus_id=Os12g0130200;Note=Similar to D-mannose binding lectin family protein%2C expressed.;Transcript_evidence=AK367962 (DDBJ);ORF_evidence=Q2RAY8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Epidermal growth factor-like%2C type 3 (IPR000742),S-locus glycoprotein (IPR000858),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Apple-like (IPR003609),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os12t0130200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	1457706	1457878	.	+	.	Parent=Os12t0130200-00
Chr12	irgsp1_rep	CDS	1457879	1459747	.	+	0	Parent=Os12t0130200-00
Chr12	irgsp1_rep	mRNA	1462306	1464813	.	-	.	ID=Os12t0130300-00;Name=Os12t0130300-00;Locus_id=Os12g0130300;Note=Similar to Resistance protein candidate (Fragment).;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QY68 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Epidermal growth factor-like%2C type 3 (IPR000742),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),PAN-1 domain (IPR003014),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),S-receptor-like serine/threonine-protein kinase (IPR024171);TENOR=Os12t0130300-00;KEGG=Os12t0130300-00
Chr12	irgsp1_rep	CDS	1462306	1464813	.	-	0	Parent=Os12t0130300-00
Chr12	irgsp1_rep	mRNA	1473487	1476097	.	-	.	ID=Os12t0130500-00;Name=Os12t0130500-00;Locus_id=Os12g0130500;Note=Similar to D-mannose binding lectin family protein.;Transcript_evidence=AK121819 (DDBJ%2C Secondary hit);ORF_evidence=Q2QY68 (UniProt);GO=Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein binding (GO:0005515),Molecular Function: sugar binding (GO:0005529);InterPro=Epidermal growth factor-like%2C type 3 (IPR000742),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),PAN-1 domain (IPR003014);TENOR=Os12t0130500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	1476096	1476097	.	-	.	Parent=Os12t0130500-00
Chr12	irgsp1_rep	CDS	1474529	1476095	.	-	0	Parent=Os12t0130500-00
Chr12	irgsp1_rep	CDS	1474453	1474478	.	-	2	Parent=Os12t0130500-00
Chr12	irgsp1_rep	three_prime_UTR	1473487	1474452	.	-	.	Parent=Os12t0130500-00
Chr12	irgsp1_rep	mRNA	1491282	1493848	.	-	.	ID=Os12t0130800-00;Name=Os12t0130800-00;Locus_id=Os12g0130800;CGSNL Gene Symbol=RLCK360;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 360;Oryzabase Gene Symbol Synonym(s)=OsRLCK360;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 360;Note=Protein kinase-like domain containing protein.;Transcript_evidence=AK367962 (DDBJ);ORF_evidence=Q2QY66 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Epidermal growth factor-like%2C type 3 (IPR000742),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Apple-like (IPR003609),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=19030;TENOR=Os12t0130800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	1491359	1493848	.	-	0	Parent=Os12t0130800-00
Chr12	irgsp1_rep	three_prime_UTR	1491282	1491358	.	-	.	Parent=Os12t0130800-00
Chr12	irgsp1_rep	mRNA	1494588	1495560	.	-	.	ID=Os12t0130900-01;Name=Os12t0130900-01;Locus_id=Os12g0130900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK061334 (DDBJ%2C Best hit),AK066915 (DDBJ%2C Best hit);ORF_evidence=B9GBQ2 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=006-303-B06,J013090C23;Expression=AK061334;TENOR=Os12t0130900-01;KEGG=Os12t0130900-01
Chr12	irgsp1_rep	five_prime_UTR	1495414	1495560	.	-	.	Parent=Os12t0130900-01
Chr12	irgsp1_rep	CDS	1494604	1495413	.	-	0	Parent=Os12t0130900-01
Chr12	irgsp1_rep	three_prime_UTR	1494588	1494603	.	-	.	Parent=Os12t0130900-01
Chr12	irgsp1_rep	mRNA	1497364	1499394	.	+	.	ID=Os12t0131000-01;Name=Os12t0131000-01;Locus_id=Os12g0131000;Note=Hypothetical conserved gene.;Transcript_evidence=AK241827 (DDBJ%2C Best hit);ORF_evidence=NP_001066073.2 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J065212K09;TENOR=Os12t0131000-01;KEGG=Os12t0131000-01
Chr12	irgsp1_rep	five_prime_UTR	1497364	1497572	.	+	.	Parent=Os12t0131000-01
Chr12	irgsp1_rep	CDS	1497573	1497678	.	+	0	Parent=Os12t0131000-01
Chr12	irgsp1_rep	CDS	1498386	1499182	.	+	2	Parent=Os12t0131000-01
Chr12	irgsp1_rep	three_prime_UTR	1499183	1499394	.	+	.	Parent=Os12t0131000-01
Chr12	irgsp1_rep	mRNA	1500415	1502112	.	-	.	ID=Os12t0131100-01;Name=Os12t0131100-01;Locus_id=Os12g0131100;Note=Similar to Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6- phosphate amidotransferase) (GFAT).;Transcript_evidence=AK105856 (DDBJ%2C Best hit);ORF_evidence=Q2QY63 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: sugar binding (GO:0005529);InterPro=Sugar isomerase (SIS) (IPR001347);NIAS_FLcDNA=001-203-H06;Expression=AK105856;TENOR=Os12t0131100-01;KEGG=Os12t0131100-01 (EC:2.6.1.16)
Chr12	irgsp1_rep	CDS	1502025	1502112	.	-	0	Parent=Os12t0131100-01
Chr12	irgsp1_rep	CDS	1501651	1501901	.	-	2	Parent=Os12t0131100-01
Chr12	irgsp1_rep	CDS	1501460	1501574	.	-	0	Parent=Os12t0131100-01
Chr12	irgsp1_rep	CDS	1501111	1501366	.	-	2	Parent=Os12t0131100-01
Chr12	irgsp1_rep	CDS	1500857	1501025	.	-	1	Parent=Os12t0131100-01
Chr12	irgsp1_rep	CDS	1500660	1500743	.	-	0	Parent=Os12t0131100-01
Chr12	irgsp1_rep	three_prime_UTR	1500415	1500659	.	-	.	Parent=Os12t0131100-01
Chr12	irgsp1_rep	mRNA	1502226	1502777	.	-	.	ID=Os12t0131150-00;Name=Os12t0131150-00;Locus_id=Os12g0131150;Note=Similar to Glucosamine-fructose-6-phosphate aminotransferase%2C isomerizing family protein%2C expressed.;Transcript_evidence=AK058784 (DDBJ%2C Secondary hit);ORF_evidence=Q2RAY0 (UniProt);TENOR=Os12t0131150-00
Chr12	irgsp1_rep	five_prime_UTR	1502777	1502777	.	-	.	Parent=Os12t0131150-00
Chr12	irgsp1_rep	CDS	1502657	1502776	.	-	0	Parent=Os12t0131150-00
Chr12	irgsp1_rep	CDS	1502226	1502352	.	-	0	Parent=Os12t0131150-00
Chr12	irgsp1_rep	mRNA	1507683	1510601	.	+	.	ID=Os12t0131200-00;Name=Os12t0131200-00;Locus_id=Os12g0131200;Note=Similar to zinc finger (DHHC type) family protein.;Transcript_evidence=AK358270 (DDBJ);ORF_evidence=NP_191252.1 (RefSeq);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C DHHC-type%2C palmitoyltransferase (IPR001594);TENOR=Os12t0131200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	1507683	1507763	.	+	.	Parent=Os12t0131200-00
Chr12	irgsp1_rep	CDS	1507764	1507859	.	+	0	Parent=Os12t0131200-00
Chr12	irgsp1_rep	CDS	1507964	1508143	.	+	0	Parent=Os12t0131200-00
Chr12	irgsp1_rep	CDS	1508381	1508692	.	+	0	Parent=Os12t0131200-00
Chr12	irgsp1_rep	CDS	1509494	1509727	.	+	0	Parent=Os12t0131200-00
Chr12	irgsp1_rep	CDS	1509930	1510535	.	+	0	Parent=Os12t0131200-00
Chr12	irgsp1_rep	three_prime_UTR	1510536	1510601	.	+	.	Parent=Os12t0131200-00
Chr12	irgsp1_rep	mRNA	1509904	1510438	.	-	.	ID=Os12t0131233-00;Name=Os12t0131233-00;Locus_id=Os12g0131233;Note=Hypothetical gene.;Transcript_evidence=EU946073 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0131233-00;KEGG=Os12t0131233-00
Chr12	irgsp1_rep	five_prime_UTR	1510315	1510438	.	-	.	Parent=Os12t0131233-00
Chr12	irgsp1_rep	CDS	1510015	1510314	.	-	0	Parent=Os12t0131233-00
Chr12	irgsp1_rep	three_prime_UTR	1509904	1510014	.	-	.	Parent=Os12t0131233-00
Chr12	irgsp1_rep	mRNA	1510926	1511973	.	-	.	ID=Os12t0131266-01;Name=Os12t0131266-01;Locus_id=Os12g0131266;Note=ATP synthase assembly factor FMC1%2C mitochondrial domain containing protein.;Transcript_evidence=AK241833 (DDBJ%2C Best hit);ORF_evidence=NP_001176773.1 (RefSeq);NIAS_FLcDNA=J065213D17;TENOR=Os12t0131266-01;KEGG=Os12t0131266-01
Chr12	irgsp1_rep	five_prime_UTR	1511936	1511973	.	-	.	Parent=Os12t0131266-01
Chr12	irgsp1_rep	CDS	1511540	1511935	.	-	0	Parent=Os12t0131266-01
Chr12	irgsp1_rep	CDS	1511092	1511205	.	-	0	Parent=Os12t0131266-01
Chr12	irgsp1_rep	three_prime_UTR	1510926	1511091	.	-	.	Parent=Os12t0131266-01
Chr12	irgsp1_rep	mRNA	1513212	1515415	.	+	.	ID=Os12t0131300-01;Name=Os12t0131300-01;Locus_id=Os12g0131300;Note=Similar to cDNA%2C clone: J065154E06%2C full insert sequence.;Transcript_evidence=AK242929 (DDBJ%2C Best hit);ORF_evidence=B7F8R8 (UniProt);NIAS_FLcDNA=J090086B06;TENOR=Os12t0131300-01;KEGG=Os12t0131300-01
Chr12	irgsp1_rep	five_prime_UTR	1513212	1513235	.	+	.	Parent=Os12t0131300-01
Chr12	irgsp1_rep	CDS	1513236	1513293	.	+	0	Parent=Os12t0131300-01
Chr12	irgsp1_rep	CDS	1513388	1513443	.	+	2	Parent=Os12t0131300-01
Chr12	irgsp1_rep	CDS	1513568	1513723	.	+	0	Parent=Os12t0131300-01
Chr12	irgsp1_rep	CDS	1514829	1514858	.	+	0	Parent=Os12t0131300-01
Chr12	irgsp1_rep	three_prime_UTR	1514859	1515415	.	+	.	Parent=Os12t0131300-01
Chr12	irgsp1_rep	mRNA	1514456	1519357	.	-	.	ID=Os12t0131400-01;Name=Os12t0131400-01;Locus_id=Os12g0131400;Oryzabase Gene Symbol Synonym(s)=OsFbox640%2C Os_F0395;Oryzabase Gene Name Synonym(s)=F-box protein 640;Note=Hypothetical conserved gene.;Transcript_evidence=AK243367 (DDBJ%2C Best hit);ORF_evidence=B8BLW2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J100062A04;Oryzabase=17401;TENOR=Os12t0131400-01;KEGG=Os12t0131400-01
Chr12	irgsp1_rep	five_prime_UTR	1519354	1519357	.	-	.	Parent=Os12t0131400-01
Chr12	irgsp1_rep	CDS	1519012	1519353	.	-	0	Parent=Os12t0131400-01
Chr12	irgsp1_rep	CDS	1515507	1515625	.	-	0	Parent=Os12t0131400-01
Chr12	irgsp1_rep	CDS	1514836	1515283	.	-	1	Parent=Os12t0131400-01
Chr12	irgsp1_rep	three_prime_UTR	1514456	1514835	.	-	.	Parent=Os12t0131400-01
Chr12	irgsp1_rep	mRNA	1523778	1526548	.	+	.	ID=Os12t0131701-00;Name=Os12t0131701-00;Locus_id=Os12g0131701;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QY60 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: protein binding (GO:0005515),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),Leucine-rich repeat (IPR001611),NB-ARC (IPR002182);Oryzabase=20239;TENOR=Os12t0131701-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	1523778	1523996	.	+	0	Parent=Os12t0131701-00
Chr12	irgsp1_rep	CDS	1524039	1524348	.	+	0	Parent=Os12t0131701-00
Chr12	irgsp1_rep	CDS	1524523	1524690	.	+	2	Parent=Os12t0131701-00
Chr12	irgsp1_rep	CDS	1525053	1525318	.	+	2	Parent=Os12t0131701-00
Chr12	irgsp1_rep	CDS	1525502	1526548	.	+	0	Parent=Os12t0131701-00
Chr12	irgsp1_rep	mRNA	1541850	1544386	.	-	.	ID=Os12t0131900-00;Name=Os12t0131900-00;Locus_id=Os12g0131900;Note=Similar to LG27/30-like.;Transcript_evidence=AK373223 (DDBJ);ORF_evidence=Q2QY56 (UniProt);GO=Molecular Function: carbohydrate binding (GO:0030246);InterPro=Galactose-binding domain-like (IPR008979),Rhamnogalacturonate lyase (IPR010325),Carbohydrate-binding-like fold (IPR013784);TENOR=Os12t0131900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	1544274	1544386	.	-	0	Parent=Os12t0131900-00
Chr12	irgsp1_rep	CDS	1544033	1544174	.	-	1	Parent=Os12t0131900-00
Chr12	irgsp1_rep	CDS	1543740	1543916	.	-	0	Parent=Os12t0131900-00
Chr12	irgsp1_rep	CDS	1543340	1543602	.	-	0	Parent=Os12t0131900-00
Chr12	irgsp1_rep	CDS	1542965	1543197	.	-	1	Parent=Os12t0131900-00
Chr12	irgsp1_rep	CDS	1542362	1542632	.	-	2	Parent=Os12t0131900-00
Chr12	irgsp1_rep	CDS	1541850	1542246	.	-	1	Parent=Os12t0131900-00
Chr12	irgsp1_rep	mRNA	1550319	1551245	.	-	.	ID=Os12t0132000-01;Name=Os12t0132000-01;Locus_id=Os12g0132000;Note=Hypothetical protein.;Transcript_evidence=AK066886 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013088C17;Expression=AK066886;TENOR=Os12t0132000-01;KEGG=Os12t0132000-01
Chr12	irgsp1_rep	five_prime_UTR	1551220	1551245	.	-	.	Parent=Os12t0132000-01
Chr12	irgsp1_rep	CDS	1550698	1551219	.	-	0	Parent=Os12t0132000-01
Chr12	irgsp1_rep	three_prime_UTR	1550319	1550697	.	-	.	Parent=Os12t0132000-01
Chr12	irgsp1_rep	mRNA	1554892	1560296	.	+	.	ID=Os12t0132200-01;Name=Os12t0132200-01;Locus_id=Os12g0132200;CGSNL Gene Symbol=CIPK32;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 32;Oryzabase Gene Symbol Synonym(s)=OsCIPK32;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 32;Note=Similar to CBL-interacting protein kinase 32.;Transcript_evidence=AK111675 (DDBJ%2C Best hit);ORF_evidence=Q2QY53 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013155F11;Oryzabase=18176;Expression=AK111675;TENOR=Os12t0132200-01;KEGG=Os12t0132200-01 (EC:2.7.11.11)
Chr12	irgsp1_rep	five_prime_UTR	1554892	1555116	.	+	.	Parent=Os12t0132200-01
Chr12	irgsp1_rep	five_prime_UTR	1556209	1556278	.	+	.	Parent=Os12t0132200-01
Chr12	irgsp1_rep	CDS	1556279	1556449	.	+	0	Parent=Os12t0132200-01
Chr12	irgsp1_rep	CDS	1556711	1556773	.	+	0	Parent=Os12t0132200-01
Chr12	irgsp1_rep	CDS	1557237	1557308	.	+	0	Parent=Os12t0132200-01
Chr12	irgsp1_rep	CDS	1557431	1557538	.	+	0	Parent=Os12t0132200-01
Chr12	irgsp1_rep	CDS	1557645	1557725	.	+	0	Parent=Os12t0132200-01
Chr12	irgsp1_rep	CDS	1557862	1557915	.	+	0	Parent=Os12t0132200-01
Chr12	irgsp1_rep	CDS	1558021	1558146	.	+	0	Parent=Os12t0132200-01
Chr12	irgsp1_rep	CDS	1558229	1558327	.	+	0	Parent=Os12t0132200-01
Chr12	irgsp1_rep	three_prime_UTR	1558328	1558726	.	+	.	Parent=Os12t0132200-01
Chr12	irgsp1_rep	three_prime_UTR	1558832	1558939	.	+	.	Parent=Os12t0132200-01
Chr12	irgsp1_rep	three_prime_UTR	1559288	1559401	.	+	.	Parent=Os12t0132200-01
Chr12	irgsp1_rep	three_prime_UTR	1559531	1559587	.	+	.	Parent=Os12t0132200-01
Chr12	irgsp1_rep	three_prime_UTR	1559668	1559742	.	+	.	Parent=Os12t0132200-01
Chr12	irgsp1_rep	three_prime_UTR	1559916	1560296	.	+	.	Parent=Os12t0132200-01
Chr12	irgsp1_rep	mRNA	1554892	1556568	.	+	.	ID=Os12t0132200-02;Name=Os12t0132200-02;Locus_id=Os12g0132200;CGSNL Gene Symbol=CIPK32;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 32;Oryzabase Gene Symbol Synonym(s)=OsCIPK32;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 32;Note=Similar to CBL-interacting protein kinase 33.;Transcript_evidence=AK111953 (DDBJ%2C Best hit);ORF_evidence=Q2RAX3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-027-G04;Oryzabase=18176;Expression=AK111953;TENOR=Os12t0132200-02;KEGG=Os12t0132200-02
Chr12	irgsp1_rep	five_prime_UTR	1554892	1555116	.	+	.	Parent=Os12t0132200-02
Chr12	irgsp1_rep	five_prime_UTR	1556209	1556278	.	+	.	Parent=Os12t0132200-02
Chr12	irgsp1_rep	CDS	1556279	1556485	.	+	0	Parent=Os12t0132200-02
Chr12	irgsp1_rep	three_prime_UTR	1556486	1556568	.	+	.	Parent=Os12t0132200-02
Chr12	irgsp1_rep	mRNA	1559859	1561568	.	-	.	ID=Os12t0132300-02;Name=Os12t0132300-02;Locus_id=Os12g0132300;CGSNL Gene Symbol=CML3;CGSNL Gene Name=CALMODULIN-LIKE PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsCML3%2C OsSTA271%2C OsCML3m%2C OsCML3s;Oryzabase Gene Name Synonym(s)=calmodulin-like protein 3%2C CaM-Like 3;Note=Similar to Calmodulin (CaM).;Transcript_evidence=AK111834 (DDBJ%2C Best hit),AK119956 (DDBJ%2C Best hit);ORF_evidence=Q0IQB6 (UniProt);NIAS_FLcDNA=J023133G18,002-184-C10;Oryzabase=10513;Expression=AK111834;TENOR=Os12t0132300-02;KEGG=Os12t0132300-02
Chr12	irgsp1_rep	five_prime_UTR	1561318	1561568	.	-	.	Parent=Os12t0132300-02
Chr12	irgsp1_rep	CDS	1561245	1561317	.	-	0	Parent=Os12t0132300-02
Chr12	irgsp1_rep	CDS	1560793	1561162	.	-	2	Parent=Os12t0132300-02
Chr12	irgsp1_rep	CDS	1560437	1560545	.	-	1	Parent=Os12t0132300-02
Chr12	irgsp1_rep	three_prime_UTR	1559859	1560436	.	-	.	Parent=Os12t0132300-02
Chr12	irgsp1_rep	mRNA	1562209	1563743	.	-	.	ID=Os12t0132400-01;Name=Os12t0132400-01;Locus_id=Os12g0132400;Oryzabase Gene Symbol Synonym(s)=OsWD40-193%2C RIP1;Oryzabase Gene Name Synonym(s)=RICE IMMATURE POLLEN 1;Note=Similar to Grwd-pending-prov protein.;Transcript_evidence=AK111507 (DDBJ%2C Best hit);ORF_evidence=Q1HFN6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J013001E23;Oryzabase=10874;Expression=AK111507;TENOR=Os12t0132400-01;KEGG=Os12t0132400-01
Chr12	irgsp1_rep	five_prime_UTR	1563686	1563743	.	-	.	Parent=Os12t0132400-01
Chr12	irgsp1_rep	CDS	1563587	1563685	.	-	0	Parent=Os12t0132400-01
Chr12	irgsp1_rep	CDS	1562982	1563094	.	-	0	Parent=Os12t0132400-01
Chr12	irgsp1_rep	CDS	1562742	1562859	.	-	1	Parent=Os12t0132400-01
Chr12	irgsp1_rep	CDS	1562438	1562569	.	-	0	Parent=Os12t0132400-01
Chr12	irgsp1_rep	three_prime_UTR	1562209	1562437	.	-	.	Parent=Os12t0132400-01
Chr12	irgsp1_rep	mRNA	1567509	1572559	.	-	.	ID=Os12t0132500-00;Name=Os12t0132500-00;Locus_id=Os12g0132500;CGSNL Gene Symbol=ZIFL9;CGSNL Gene Name=ZINC-INDUCED FACILITATOR-LIKE 9;Oryzabase Gene Symbol Synonym(s)=OsZIFL9;Oryzabase Gene Name Synonym(s)=zinc-induced facilitator-like 9;Note=Similar to Major facilitator superfamily antiporter.;Transcript_evidence=CT833630 (DDBJ%2C Best hit);ORF_evidence=Q8H6D5 (UniProt);Oryzabase=9478;TENOR=Os12t0132500-00;KEGG=Os12t0132500-00
Chr12	irgsp1_rep	five_prime_UTR	1572509	1572559	.	-	.	Parent=Os12t0132500-00
Chr12	irgsp1_rep	five_prime_UTR	1572397	1572421	.	-	.	Parent=Os12t0132500-00
Chr12	irgsp1_rep	CDS	1572246	1572396	.	-	0	Parent=Os12t0132500-00
Chr12	irgsp1_rep	CDS	1572035	1572075	.	-	2	Parent=Os12t0132500-00
Chr12	irgsp1_rep	CDS	1571850	1571910	.	-	0	Parent=Os12t0132500-00
Chr12	irgsp1_rep	CDS	1571668	1571717	.	-	2	Parent=Os12t0132500-00
Chr12	irgsp1_rep	three_prime_UTR	1571616	1571667	.	-	.	Parent=Os12t0132500-00
Chr12	irgsp1_rep	three_prime_UTR	1571434	1571536	.	-	.	Parent=Os12t0132500-00
Chr12	irgsp1_rep	three_prime_UTR	1571286	1571339	.	-	.	Parent=Os12t0132500-00
Chr12	irgsp1_rep	three_prime_UTR	1571141	1571203	.	-	.	Parent=Os12t0132500-00
Chr12	irgsp1_rep	three_prime_UTR	1571004	1571053	.	-	.	Parent=Os12t0132500-00
Chr12	irgsp1_rep	three_prime_UTR	1570845	1570920	.	-	.	Parent=Os12t0132500-00
Chr12	irgsp1_rep	three_prime_UTR	1570172	1570345	.	-	.	Parent=Os12t0132500-00
Chr12	irgsp1_rep	three_prime_UTR	1569970	1570057	.	-	.	Parent=Os12t0132500-00
Chr12	irgsp1_rep	three_prime_UTR	1569417	1569502	.	-	.	Parent=Os12t0132500-00
Chr12	irgsp1_rep	three_prime_UTR	1569220	1569327	.	-	.	Parent=Os12t0132500-00
Chr12	irgsp1_rep	three_prime_UTR	1568655	1568699	.	-	.	Parent=Os12t0132500-00
Chr12	irgsp1_rep	three_prime_UTR	1568193	1568236	.	-	.	Parent=Os12t0132500-00
Chr12	irgsp1_rep	three_prime_UTR	1567509	1568065	.	-	.	Parent=Os12t0132500-00
Chr12	irgsp1_rep	mRNA	1568489	1572355	.	+	.	ID=Os12t0132650-00;Name=Os12t0132650-00;Locus_id=Os12g0132650;Note=Non-protein coding transcript.;Transcript_evidence=tplb0023l07 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os12t0132650-00
Chr12	irgsp1_rep	exon	1568489	1568598	.	+	.	Parent=Os12t0132650-00
Chr12	irgsp1_rep	exon	1569204	1569349	.	+	.	Parent=Os12t0132650-00
Chr12	irgsp1_rep	exon	1569899	1570057	.	+	.	Parent=Os12t0132650-00
Chr12	irgsp1_rep	exon	1570172	1570348	.	+	.	Parent=Os12t0132650-00
Chr12	irgsp1_rep	exon	1571026	1571523	.	+	.	Parent=Os12t0132650-00
Chr12	irgsp1_rep	exon	1571601	1571795	.	+	.	Parent=Os12t0132650-00
Chr12	irgsp1_rep	exon	1572235	1572355	.	+	.	Parent=Os12t0132650-00
Chr12	irgsp1_rep	mRNA	1584176	1589083	.	-	.	ID=Os12t0132800-01;Name=Os12t0132800-01;Locus_id=Os12g0132800;CGSNL Gene Symbol=ZIFL10;CGSNL Gene Name=ZINC-INDUCED FACILITATOR-LIKE 10;Oryzabase Gene Symbol Synonym(s)=OsZIFL10%2C Os-mfs2%2C mfs2;Oryzabase Gene Name Synonym(s)=zinc-induced facilitator-like 10%2C major facilitator superfamily antiporter 2;Note=Major facilitator superfamily antiporter.;Transcript_evidence=AK241552 (DDBJ%2C Best hit);ORF_evidence=Q8H6D5 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J065177A21;Oryzabase=9479;TENOR=Os12t0132800-01;KEGG=Os12t0132800-01
Chr12	irgsp1_rep	five_prime_UTR	1588935	1589083	.	-	.	Parent=Os12t0132800-01
Chr12	irgsp1_rep	CDS	1588802	1588934	.	-	0	Parent=Os12t0132800-01
Chr12	irgsp1_rep	CDS	1588630	1588670	.	-	2	Parent=Os12t0132800-01
Chr12	irgsp1_rep	CDS	1588480	1588540	.	-	0	Parent=Os12t0132800-01
Chr12	irgsp1_rep	CDS	1588266	1588368	.	-	2	Parent=Os12t0132800-01
Chr12	irgsp1_rep	CDS	1588039	1588141	.	-	1	Parent=Os12t0132800-01
Chr12	irgsp1_rep	CDS	1587840	1587893	.	-	0	Parent=Os12t0132800-01
Chr12	irgsp1_rep	CDS	1587693	1587755	.	-	0	Parent=Os12t0132800-01
Chr12	irgsp1_rep	CDS	1587535	1587584	.	-	0	Parent=Os12t0132800-01
Chr12	irgsp1_rep	CDS	1587380	1587455	.	-	1	Parent=Os12t0132800-01
Chr12	irgsp1_rep	CDS	1586971	1587141	.	-	0	Parent=Os12t0132800-01
Chr12	irgsp1_rep	CDS	1586386	1586473	.	-	0	Parent=Os12t0132800-01
Chr12	irgsp1_rep	CDS	1586159	1586244	.	-	2	Parent=Os12t0132800-01
Chr12	irgsp1_rep	CDS	1585912	1586019	.	-	0	Parent=Os12t0132800-01
Chr12	irgsp1_rep	CDS	1585493	1585537	.	-	0	Parent=Os12t0132800-01
Chr12	irgsp1_rep	CDS	1585286	1585374	.	-	0	Parent=Os12t0132800-01
Chr12	irgsp1_rep	CDS	1584880	1584923	.	-	1	Parent=Os12t0132800-01
Chr12	irgsp1_rep	CDS	1584402	1584499	.	-	2	Parent=Os12t0132800-01
Chr12	irgsp1_rep	three_prime_UTR	1584176	1584401	.	-	.	Parent=Os12t0132800-01
Chr12	irgsp1_rep	mRNA	1584365	1588945	.	+	.	ID=Os12t0132850-00;Name=Os12t0132850-00;Locus_id=Os12g0132850;Note=Hypothetical protein.;Transcript_evidence=tplb0023l07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0132850-00
Chr12	irgsp1_rep	five_prime_UTR	1584365	1584508	.	+	.	Parent=Os12t0132850-00
Chr12	irgsp1_rep	five_prime_UTR	1585257	1585370	.	+	.	Parent=Os12t0132850-00
Chr12	irgsp1_rep	five_prime_UTR	1585490	1585532	.	+	.	Parent=Os12t0132850-00
Chr12	irgsp1_rep	five_prime_UTR	1585905	1586033	.	+	.	Parent=Os12t0132850-00
Chr12	irgsp1_rep	five_prime_UTR	1586292	1586456	.	+	.	Parent=Os12t0132850-00
Chr12	irgsp1_rep	five_prime_UTR	1586954	1587131	.	+	.	Parent=Os12t0132850-00
Chr12	irgsp1_rep	five_prime_UTR	1587369	1587453	.	+	.	Parent=Os12t0132850-00
Chr12	irgsp1_rep	five_prime_UTR	1587533	1587590	.	+	.	Parent=Os12t0132850-00
Chr12	irgsp1_rep	five_prime_UTR	1587702	1588165	.	+	.	Parent=Os12t0132850-00
Chr12	irgsp1_rep	five_prime_UTR	1588294	1588335	.	+	.	Parent=Os12t0132850-00
Chr12	irgsp1_rep	CDS	1588336	1588366	.	+	0	Parent=Os12t0132850-00
Chr12	irgsp1_rep	CDS	1588478	1588531	.	+	2	Parent=Os12t0132850-00
Chr12	irgsp1_rep	CDS	1588744	1588945	.	+	2	Parent=Os12t0132850-00
Chr12	irgsp1_rep	mRNA	1594471	1595697	.	+	.	ID=Os12t0132900-01;Name=Os12t0132900-01;Locus_id=Os12g0132900;Note=Hypothetical gene.;Transcript_evidence=AK068041 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J013130P06;Expression=AK068041;TENOR=Os12t0132900-01;KEGG=Os12t0132900-01
Chr12	irgsp1_rep	five_prime_UTR	1594471	1594736	.	+	.	Parent=Os12t0132900-01
Chr12	irgsp1_rep	CDS	1594737	1594905	.	+	0	Parent=Os12t0132900-01
Chr12	irgsp1_rep	CDS	1595369	1595445	.	+	2	Parent=Os12t0132900-01
Chr12	irgsp1_rep	three_prime_UTR	1595446	1595697	.	+	.	Parent=Os12t0132900-01
Chr12	irgsp1_rep	mRNA	1595326	1600969	.	-	.	ID=Os12t0133000-00;Name=Os12t0133000-00;Locus_id=Os12g0133000;CGSNL Gene Symbol=ZIFL11;CGSNL Gene Name=ZINC-INDUCED FACILITATOR-LIKE 11;Oryzabase Gene Symbol Synonym(s)=OsZIFL11;Oryzabase Gene Name Synonym(s)=zinc-induced facilitator-like 11;Note=Similar to Major facilitator superfamily antiporter.;Transcript_evidence=EU970439 (DDBJ);ORF_evidence=B6TZM4 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);Oryzabase=9480;TENOR=Os12t0133000-00;KEGG=Os12t0133000-00
Chr12	irgsp1_rep	five_prime_UTR	1600963	1600969	.	-	.	Parent=Os12t0133000-00
Chr12	irgsp1_rep	CDS	1600791	1600962	.	-	0	Parent=Os12t0133000-00
Chr12	irgsp1_rep	CDS	1599120	1599160	.	-	2	Parent=Os12t0133000-00
Chr12	irgsp1_rep	CDS	1598560	1598620	.	-	0	Parent=Os12t0133000-00
Chr12	irgsp1_rep	CDS	1598338	1598440	.	-	2	Parent=Os12t0133000-00
Chr12	irgsp1_rep	CDS	1598153	1598255	.	-	1	Parent=Os12t0133000-00
Chr12	irgsp1_rep	CDS	1597994	1598047	.	-	0	Parent=Os12t0133000-00
Chr12	irgsp1_rep	CDS	1597835	1597897	.	-	0	Parent=Os12t0133000-00
Chr12	irgsp1_rep	CDS	1597710	1597759	.	-	0	Parent=Os12t0133000-00
Chr12	irgsp1_rep	CDS	1597532	1597607	.	-	1	Parent=Os12t0133000-00
Chr12	irgsp1_rep	CDS	1597160	1597336	.	-	0	Parent=Os12t0133000-00
Chr12	irgsp1_rep	CDS	1596873	1596960	.	-	0	Parent=Os12t0133000-00
Chr12	irgsp1_rep	CDS	1596648	1596733	.	-	2	Parent=Os12t0133000-00
Chr12	irgsp1_rep	CDS	1596458	1596565	.	-	0	Parent=Os12t0133000-00
Chr12	irgsp1_rep	CDS	1596077	1596121	.	-	0	Parent=Os12t0133000-00
Chr12	irgsp1_rep	CDS	1595896	1595984	.	-	0	Parent=Os12t0133000-00
Chr12	irgsp1_rep	CDS	1595731	1595774	.	-	1	Parent=Os12t0133000-00
Chr12	irgsp1_rep	CDS	1595343	1595449	.	-	2	Parent=Os12t0133000-00
Chr12	irgsp1_rep	three_prime_UTR	1595326	1595342	.	-	.	Parent=Os12t0133000-00
Chr12	irgsp1_rep	mRNA	1595896	1600969	.	+	.	ID=Os12t0133025-00;Name=Os12t0133025-00;Locus_id=Os12g0133025;Note=Non-protein coding transcript.;Transcript_evidence=tplb0023l07 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os12t0133025-00
Chr12	irgsp1_rep	exon	1595896	1596002	.	+	.	Parent=Os12t0133025-00
Chr12	irgsp1_rep	exon	1596436	1596576	.	+	.	Parent=Os12t0133025-00
Chr12	irgsp1_rep	exon	1596784	1596960	.	+	.	Parent=Os12t0133025-00
Chr12	irgsp1_rep	exon	1597160	1597251	.	+	.	Parent=Os12t0133025-00
Chr12	irgsp1_rep	exon	1597453	1597616	.	+	.	Parent=Os12t0133025-00
Chr12	irgsp1_rep	exon	1597800	1598260	.	+	.	Parent=Os12t0133025-00
Chr12	irgsp1_rep	exon	1598342	1598466	.	+	.	Parent=Os12t0133025-00
Chr12	irgsp1_rep	exon	1600720	1600969	.	+	.	Parent=Os12t0133025-00
Chr12	irgsp1_rep	mRNA	1601937	1604342	.	-	.	ID=Os12t0133050-00;Name=Os12t0133050-00;Locus_id=Os12g0133050;Oryzabase Gene Name Synonym(s)=60S acidic ribosomal protein P0;Note=Similar to 60S acidic ribosomal protein P0.;Transcript_evidence=AK361198 (DDBJ);ORF_evidence=NP_001105482.1 (RefSeq);GO=Biological Process: translational elongation (GO:0006414),Biological Process: ribosome biogenesis (GO:0042254),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L10/acidic P0 (IPR001790),Ribosomal protein 60S (IPR001813);Oryzabase=16007;TENOR=Os12t0133050-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	1604330	1604342	.	-	.	Parent=Os12t0133050-00
Chr12	irgsp1_rep	CDS	1604072	1604329	.	-	0	Parent=Os12t0133050-00
Chr12	irgsp1_rep	CDS	1603921	1603989	.	-	0	Parent=Os12t0133050-00
Chr12	irgsp1_rep	CDS	1603143	1603241	.	-	0	Parent=Os12t0133050-00
Chr12	irgsp1_rep	CDS	1602671	1603063	.	-	0	Parent=Os12t0133050-00
Chr12	irgsp1_rep	CDS	1602130	1602273	.	-	0	Parent=Os12t0133050-00
Chr12	irgsp1_rep	three_prime_UTR	1601937	1602129	.	-	.	Parent=Os12t0133050-00
Chr12	irgsp1_rep	mRNA	1606119	1620843	.	-	.	ID=Os12t0133100-01;Name=Os12t0133100-01;Locus_id=Os12g0133100;CGSNL Gene Symbol=ZIFL12;CGSNL Gene Name=ZINC-INDUCED FACILITATOR-LIKE 12;Oryzabase Gene Symbol Synonym(s)=OsZIFL12%2C OsVMT%2C VMT%2C OsVMT/OsZIFL12;Oryzabase Gene Name Synonym(s)=zinc-induced facilitator-like 12%2C VACUOLAR MUGINEIC ACID TRANSPORTER;Note=Major facilitator superfamily protein.;Transcript_evidence=AK100888 (DDBJ%2C Best hit);ORF_evidence=B4FA49 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J023128K07;Oryzabase=9481;Expression=AK100888;TENOR=Os12t0133100-01;KEGG=Os12t0133100-01
Chr12	irgsp1_rep	five_prime_UTR	1620255	1620843	.	-	.	Parent=Os12t0133100-01
Chr12	irgsp1_rep	five_prime_UTR	1619876	1620017	.	-	.	Parent=Os12t0133100-01
Chr12	irgsp1_rep	CDS	1619779	1619875	.	-	0	Parent=Os12t0133100-01
Chr12	irgsp1_rep	CDS	1611011	1611051	.	-	2	Parent=Os12t0133100-01
Chr12	irgsp1_rep	CDS	1610818	1610878	.	-	0	Parent=Os12t0133100-01
Chr12	irgsp1_rep	CDS	1610630	1610732	.	-	2	Parent=Os12t0133100-01
Chr12	irgsp1_rep	CDS	1610396	1610498	.	-	1	Parent=Os12t0133100-01
Chr12	irgsp1_rep	CDS	1610226	1610279	.	-	0	Parent=Os12t0133100-01
Chr12	irgsp1_rep	CDS	1610083	1610145	.	-	0	Parent=Os12t0133100-01
Chr12	irgsp1_rep	CDS	1609952	1610001	.	-	0	Parent=Os12t0133100-01
Chr12	irgsp1_rep	CDS	1609791	1609866	.	-	1	Parent=Os12t0133100-01
Chr12	irgsp1_rep	CDS	1609186	1609386	.	-	0	Parent=Os12t0133100-01
Chr12	irgsp1_rep	CDS	1608554	1608641	.	-	0	Parent=Os12t0133100-01
Chr12	irgsp1_rep	CDS	1608066	1608151	.	-	2	Parent=Os12t0133100-01
Chr12	irgsp1_rep	CDS	1607875	1607982	.	-	0	Parent=Os12t0133100-01
Chr12	irgsp1_rep	CDS	1607478	1607522	.	-	0	Parent=Os12t0133100-01
Chr12	irgsp1_rep	CDS	1607307	1607395	.	-	0	Parent=Os12t0133100-01
Chr12	irgsp1_rep	CDS	1606800	1606843	.	-	1	Parent=Os12t0133100-01
Chr12	irgsp1_rep	CDS	1606545	1606648	.	-	2	Parent=Os12t0133100-01
Chr12	irgsp1_rep	three_prime_UTR	1606536	1606544	.	-	.	Parent=Os12t0133100-01
Chr12	irgsp1_rep	three_prime_UTR	1606119	1606425	.	-	.	Parent=Os12t0133100-01
Chr12	irgsp1_rep	mRNA	1606119	1616744	.	-	.	ID=Os12t0133100-02;Name=Os12t0133100-02;Locus_id=Os12g0133100;RAP-DB Gene Symbol Synonym(s)=OsVMT%2C OsZIFL12%2C OsVMT/OsZIFL12;RAP-DB Gene Name Synonym(s)=VACUOLAR MUGINEIC ACID TRANSPORTER%2C ZINC-INDUCED FACILITATOR-LIKE 12;CGSNL Gene Symbol=ZIFL12;CGSNL Gene Name=ZINC-INDUCED FACILITATOR-LIKE 12;Oryzabase Gene Symbol Synonym(s)=OsZIFL12%2C OsVMT%2C VMT%2C OsVMT/OsZIFL12;Oryzabase Gene Name Synonym(s)=zinc-induced facilitator-like 12%2C VACUOLAR MUGINEIC ACID TRANSPORTER;Note=Vacuolar phytosiderophore transporter%2C Sequestration of phytosiderophore (DMA) into the vacuoles;Transcript_evidence=AK102718;ORF_evidence=H2KWZ0;GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral component of membrane (GO:0016021);InterPro=MFS transporter superfamily (IPR036259),Major facilitator superfamily (IPR011701),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J033105E18;Manual Curation=July 24%2C 2019;Literature_PMID=31331995;Oryzabase=9481;Expression=AK102718;TENOR=Os12t0133100-02;Subcellular location=tonoplast (GO:0009705)
Chr12	irgsp1_rep	five_prime_UTR	1616523	1616744	.	-	.	Parent=Os12t0133100-02
Chr12	irgsp1_rep	CDS	1616330	1616522	.	-	0	Parent=Os12t0133100-02
Chr12	irgsp1_rep	CDS	1611011	1611051	.	-	2	Parent=Os12t0133100-02
Chr12	irgsp1_rep	CDS	1610818	1610878	.	-	0	Parent=Os12t0133100-02
Chr12	irgsp1_rep	CDS	1610630	1610732	.	-	2	Parent=Os12t0133100-02
Chr12	irgsp1_rep	CDS	1610396	1610498	.	-	1	Parent=Os12t0133100-02
Chr12	irgsp1_rep	CDS	1610226	1610279	.	-	0	Parent=Os12t0133100-02
Chr12	irgsp1_rep	CDS	1610083	1610145	.	-	0	Parent=Os12t0133100-02
Chr12	irgsp1_rep	CDS	1609952	1610001	.	-	0	Parent=Os12t0133100-02
Chr12	irgsp1_rep	CDS	1609791	1609866	.	-	1	Parent=Os12t0133100-02
Chr12	irgsp1_rep	CDS	1609186	1609386	.	-	0	Parent=Os12t0133100-02
Chr12	irgsp1_rep	CDS	1608554	1608641	.	-	0	Parent=Os12t0133100-02
Chr12	irgsp1_rep	CDS	1608066	1608151	.	-	2	Parent=Os12t0133100-02
Chr12	irgsp1_rep	CDS	1607875	1607982	.	-	0	Parent=Os12t0133100-02
Chr12	irgsp1_rep	CDS	1607478	1607522	.	-	0	Parent=Os12t0133100-02
Chr12	irgsp1_rep	CDS	1607307	1607395	.	-	0	Parent=Os12t0133100-02
Chr12	irgsp1_rep	CDS	1606800	1606843	.	-	1	Parent=Os12t0133100-02
Chr12	irgsp1_rep	CDS	1606545	1606648	.	-	2	Parent=Os12t0133100-02
Chr12	irgsp1_rep	three_prime_UTR	1606119	1606544	.	-	.	Parent=Os12t0133100-02
Chr12	irgsp1_rep	mRNA	1606550	1613217	.	+	.	ID=Os12t0133201-00;Name=Os12t0133201-00;Locus_id=Os12g0133201;Note=Hypothetical protein.;Transcript_evidence=tplb0023l07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0133201-00
Chr12	irgsp1_rep	five_prime_UTR	1606550	1606650	.	+	.	Parent=Os12t0133201-00
Chr12	irgsp1_rep	five_prime_UTR	1607258	1607404	.	+	.	Parent=Os12t0133201-00
Chr12	irgsp1_rep	five_prime_UTR	1607843	1608003	.	+	.	Parent=Os12t0133201-00
Chr12	irgsp1_rep	five_prime_UTR	1608484	1608586	.	+	.	Parent=Os12t0133201-00
Chr12	irgsp1_rep	CDS	1608587	1608646	.	+	0	Parent=Os12t0133201-00
Chr12	irgsp1_rep	CDS	1609197	1609376	.	+	0	Parent=Os12t0133201-00
Chr12	irgsp1_rep	CDS	1609967	1610077	.	+	0	Parent=Os12t0133201-00
Chr12	irgsp1_rep	three_prime_UTR	1610078	1610462	.	+	.	Parent=Os12t0133201-00
Chr12	irgsp1_rep	three_prime_UTR	1610586	1610739	.	+	.	Parent=Os12t0133201-00
Chr12	irgsp1_rep	three_prime_UTR	1610826	1610926	.	+	.	Parent=Os12t0133201-00
Chr12	irgsp1_rep	three_prime_UTR	1613097	1613217	.	+	.	Parent=Os12t0133201-00
Chr12	irgsp1_rep	mRNA	1634877	1645862	.	-	.	ID=Os12t0133300-00;Name=Os12t0133300-00;Locus_id=Os12g0133300;CGSNL Gene Symbol=ZIFL13;CGSNL Gene Name=ZINC-INDUCED FACILITATOR-LIKE 13;Oryzabase Gene Symbol Synonym(s)=OsZIFL13;Oryzabase Gene Name Synonym(s)=zinc-induced facilitator-like 13;Note=Similar to Carbohydrate transporter/ sugar porter/ transporter.;Transcript_evidence=AK368328 (DDBJ);ORF_evidence=B6SKE4 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);Oryzabase=9482;TENOR=Os12t0133300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	1645857	1645862	.	-	.	Parent=Os12t0133300-00
Chr12	irgsp1_rep	CDS	1645703	1645856	.	-	0	Parent=Os12t0133300-00
Chr12	irgsp1_rep	CDS	1640997	1641037	.	-	2	Parent=Os12t0133300-00
Chr12	irgsp1_rep	CDS	1640513	1640573	.	-	0	Parent=Os12t0133300-00
Chr12	irgsp1_rep	CDS	1640288	1640394	.	-	2	Parent=Os12t0133300-00
Chr12	irgsp1_rep	three_prime_UTR	1640085	1640187	.	-	.	Parent=Os12t0133300-00
Chr12	irgsp1_rep	three_prime_UTR	1639943	1639996	.	-	.	Parent=Os12t0133300-00
Chr12	irgsp1_rep	three_prime_UTR	1639801	1639863	.	-	.	Parent=Os12t0133300-00
Chr12	irgsp1_rep	three_prime_UTR	1639661	1639710	.	-	.	Parent=Os12t0133300-00
Chr12	irgsp1_rep	three_prime_UTR	1639506	1639581	.	-	.	Parent=Os12t0133300-00
Chr12	irgsp1_rep	three_prime_UTR	1639116	1639315	.	-	.	Parent=Os12t0133300-00
Chr12	irgsp1_rep	three_prime_UTR	1637760	1637847	.	-	.	Parent=Os12t0133300-00
Chr12	irgsp1_rep	three_prime_UTR	1636956	1637041	.	-	.	Parent=Os12t0133300-00
Chr12	irgsp1_rep	three_prime_UTR	1636743	1636872	.	-	.	Parent=Os12t0133300-00
Chr12	irgsp1_rep	three_prime_UTR	1635448	1635593	.	-	.	Parent=Os12t0133300-00
Chr12	irgsp1_rep	three_prime_UTR	1634877	1635125	.	-	.	Parent=Os12t0133300-00
Chr12	irgsp1_rep	mRNA	1637739	1640416	.	+	.	ID=Os12t0133350-00;Name=Os12t0133350-00;Locus_id=Os12g0133350;Note=Non-protein coding transcript.;Transcript_evidence=tplb0023l07 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os12t0133350-00
Chr12	irgsp1_rep	exon	1637739	1637876	.	+	.	Parent=Os12t0133350-00
Chr12	irgsp1_rep	exon	1639141	1639252	.	+	.	Parent=Os12t0133350-00
Chr12	irgsp1_rep	exon	1639479	1639617	.	+	.	Parent=Os12t0133350-00
Chr12	irgsp1_rep	exon	1639793	1640210	.	+	.	Parent=Os12t0133350-00
Chr12	irgsp1_rep	exon	1640320	1640416	.	+	.	Parent=Os12t0133350-00
Chr12	irgsp1_rep	mRNA	1646425	1647986	.	+	.	ID=Os12t0133400-01;Name=Os12t0133400-01;Locus_id=Os12g0133400;Note=4'-phosphopantetheinyl transferase domain containing protein.;Transcript_evidence=AK071502 (DDBJ%2C Best hit);ORF_evidence=Q2RAV1 (UniProt);GO=Biological Process: macromolecule biosynthetic process (GO:0009059),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: holo-[acyl-carrier-protein] synthase activity (GO:0008897);InterPro=4&apos%3B-phosphopantetheinyl transferase (IPR008278);NIAS_FLcDNA=J023089C15;Expression=AK071502;TENOR=Os12t0133400-01;KEGG=Os12t0133400-01
Chr12	irgsp1_rep	five_prime_UTR	1646425	1646430	.	+	.	Parent=Os12t0133400-01
Chr12	irgsp1_rep	CDS	1646431	1646576	.	+	0	Parent=Os12t0133400-01
Chr12	irgsp1_rep	CDS	1646686	1646818	.	+	1	Parent=Os12t0133400-01
Chr12	irgsp1_rep	CDS	1646950	1647185	.	+	0	Parent=Os12t0133400-01
Chr12	irgsp1_rep	CDS	1647292	1647463	.	+	1	Parent=Os12t0133400-01
Chr12	irgsp1_rep	CDS	1647573	1647734	.	+	0	Parent=Os12t0133400-01
Chr12	irgsp1_rep	three_prime_UTR	1647735	1647986	.	+	.	Parent=Os12t0133400-01
Chr12	irgsp1_rep	mRNA	1648260	1650685	.	+	.	ID=Os12t0133500-00;Name=Os12t0133500-00;Locus_id=Os12g0133500;CGSNL Gene Symbol=CDPK26;CGSNL Gene Name=CALCIUM-DEPENDENT PROTEIN KINASE 26;Oryzabase Gene Symbol Synonym(s)=OsCDPK26%2C OsCPK26;Oryzabase Gene Name Synonym(s)=calcium-dependent protein kinase;Note=Similar to Calcium-dependent protein kinase (Fragment).;Transcript_evidence=AF319480 (DDBJ%2C Secondary hit);ORF_evidence=Q41793 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Calcium-binding EF-hand (IPR002048),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),EF-hand-like domain (IPR011992),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);Oryzabase=8077;TENOR=Os12t0133500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	1648260	1648299	.	+	.	Parent=Os12t0133500-00
Chr12	irgsp1_rep	CDS	1648300	1649308	.	+	0	Parent=Os12t0133500-00
Chr12	irgsp1_rep	CDS	1649443	1649558	.	+	2	Parent=Os12t0133500-00
Chr12	irgsp1_rep	CDS	1649631	1649798	.	+	0	Parent=Os12t0133500-00
Chr12	irgsp1_rep	CDS	1649892	1650019	.	+	0	Parent=Os12t0133500-00
Chr12	irgsp1_rep	CDS	1650102	1650201	.	+	1	Parent=Os12t0133500-00
Chr12	irgsp1_rep	CDS	1650310	1650414	.	+	0	Parent=Os12t0133500-00
Chr12	irgsp1_rep	three_prime_UTR	1650415	1650685	.	+	.	Parent=Os12t0133500-00
Chr12	irgsp1_rep	mRNA	1650866	1652223	.	-	.	ID=Os12t0133600-01;Name=Os12t0133600-01;Locus_id=Os12g0133600;Note=Conserved hypothetical protein.;Transcript_evidence=AK103096 (DDBJ%2C Best hit);ORF_evidence=A2ZB69 (UniProt);NIAS_FLcDNA=J033118M03;Expression=AK103096;TENOR=Os12t0133600-01;KEGG=Os12t0133600-01
Chr12	irgsp1_rep	five_prime_UTR	1652038	1652223	.	-	.	Parent=Os12t0133600-01
Chr12	irgsp1_rep	CDS	1651915	1652037	.	-	0	Parent=Os12t0133600-01
Chr12	irgsp1_rep	CDS	1651422	1651487	.	-	0	Parent=Os12t0133600-01
Chr12	irgsp1_rep	three_prime_UTR	1651410	1651421	.	-	.	Parent=Os12t0133600-01
Chr12	irgsp1_rep	three_prime_UTR	1650866	1651165	.	-	.	Parent=Os12t0133600-01
Chr12	irgsp1_rep	mRNA	1652592	1655199	.	-	.	ID=Os12t0133700-00;Name=Os12t0133700-00;Locus_id=Os12g0133700;Oryzabase Gene Symbol Synonym(s)=OsPP125;Oryzabase Gene Name Synonym(s)=Protein phosphatase 125;Note=Similar to Dual specificity protein phosphatase 19 (EC 3.1.3.48) (EC 3.1.3.16) (Stress-activated protein kinase pathway-regulating phosphatase 1) (Protein phosphatase SKRP1). Splice isoform 2.;Transcript_evidence=CU405769 (DDBJ%2C Best hit);ORF_evidence=Q2HSZ6 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Biological Process: dephosphorylation (GO:0016311),Molecular Function: protein tyrosine phosphatase activity (GO:0004725),Molecular Function: protein tyrosine/serine/threonine phosphatase activity (GO:0008138),Molecular Function: phosphatase activity (GO:0016791);InterPro=Dual specificity phosphatase%2C catalytic domain (IPR000340),Protein-tyrosine/Dual-specificity phosphatase (IPR000387),Protein-tyrosine phosphatase%2C active site (IPR016130),Tyrosine protein phosphatase%2C dual specificity%2C 12 (IPR016278),Dual specificity phosphatase%2C subgroup%2C catalytic domain (IPR020422);Oryzabase=18662;TENOR=Os12t0133700-00;KEGG=Os12t0133700-00 (EC:3.1.3.48)
Chr12	irgsp1_rep	five_prime_UTR	1655066	1655199	.	-	.	Parent=Os12t0133700-00
Chr12	irgsp1_rep	CDS	1654647	1655065	.	-	0	Parent=Os12t0133700-00
Chr12	irgsp1_rep	CDS	1654217	1654269	.	-	1	Parent=Os12t0133700-00
Chr12	irgsp1_rep	CDS	1654028	1654092	.	-	2	Parent=Os12t0133700-00
Chr12	irgsp1_rep	CDS	1653870	1653948	.	-	0	Parent=Os12t0133700-00
Chr12	irgsp1_rep	CDS	1653153	1653452	.	-	2	Parent=Os12t0133700-00
Chr12	irgsp1_rep	CDS	1652814	1652968	.	-	2	Parent=Os12t0133700-00
Chr12	irgsp1_rep	three_prime_UTR	1652592	1652813	.	-	.	Parent=Os12t0133700-00
Chr12	irgsp1_rep	mRNA	1654902	1655183	.	+	.	ID=Os12t0133750-00;Name=Os12t0133750-00;Locus_id=Os12g0133750;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os12t0133750-00
Chr12	irgsp1_rep	CDS	1654902	1655183	.	+	0	Parent=Os12t0133750-00
Chr12	irgsp1_rep	mRNA	1658535	1661213	.	-	.	ID=Os12t0133800-01;Name=Os12t0133800-01;Locus_id=Os12g0133800;RAP-DB Gene Symbol Synonym(s)=OsPIN1d;RAP-DB Gene Name Synonym(s)=PIN-FORMED1d;CGSNL Gene Symbol=PIN1D;CGSNL Gene Name=PIN PROTEIN 1D;Oryzabase Gene Symbol Synonym(s)=OsPIN1D%2C OsPIN1d;Note=PIN protein%2C Auxin efflux carrier%2C Auxin transport and signaling%2C Panicle formation;Transcript_evidence=AK059577 (truncated),Q0IQA5 (UniProt);ORF_evidence=Q0IQA5;GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral component of membrane (GO:0016021);InterPro=Membrane transport protein (IPR004776),Auxin efflux carrier%2C plant type (IPR014024);NIAS_FLcDNA=001-030-A11 (truncated);Manual Curation=August 16%2C 2019;Literature_PMID=31410483;Oryzabase=6765;TENOR=Os12t0133800-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	1660175	1661213	.	-	0	Parent=Os12t0133800-01
Chr12	irgsp1_rep	CDS	1659540	1659789	.	-	2	Parent=Os12t0133800-01
Chr12	irgsp1_rep	CDS	1659343	1659428	.	-	1	Parent=Os12t0133800-01
Chr12	irgsp1_rep	CDS	1659091	1659248	.	-	2	Parent=Os12t0133800-01
Chr12	irgsp1_rep	CDS	1658924	1659000	.	-	0	Parent=Os12t0133800-01
Chr12	irgsp1_rep	CDS	1658535	1658601	.	-	1	Parent=Os12t0133800-01
Chr12	irgsp1_rep	mRNA	1658923	1661216	.	+	.	ID=Os12t0133850-00;Name=Os12t0133850-00;Locus_id=Os12g0133850;Note=Hypothetical protein.;Transcript_evidence=tplb0036f07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0133850-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	1658923	1659025	.	+	.	Parent=Os12t0133850-00
Chr12	irgsp1_rep	five_prime_UTR	1659112	1659270	.	+	.	Parent=Os12t0133850-00
Chr12	irgsp1_rep	five_prime_UTR	1659455	1659791	.	+	.	Parent=Os12t0133850-00
Chr12	irgsp1_rep	five_prime_UTR	1659983	1660494	.	+	.	Parent=Os12t0133850-00
Chr12	irgsp1_rep	CDS	1660495	1661216	.	+	0	Parent=Os12t0133850-00
Chr12	irgsp1_rep	mRNA	1663836	1668952	.	-	.	ID=Os12t0133900-01;Name=Os12t0133900-01;Locus_id=Os12g0133900;Oryzabase Gene Name Synonym(s)=M-phase phosphoprotein 10;Note=Similar to Epa4p.;Transcript_evidence=AK102656 (DDBJ%2C Best hit);ORF_evidence=Q2RAU6 (UniProt);GO=Biological Process: rRNA processing (GO:0006364),Cellular Component: nucleus (GO:0005634),Cellular Component: ribonucleoprotein complex (GO:0030529);InterPro=Mpp10 protein (IPR007151),U3 small nucleolar ribonucleoprotein complex%2C subunit Mpp10p (IPR012173);NIAS_FLcDNA=J033101H09;Oryzabase=20161;Expression=AK102656;TENOR=Os12t0133900-01;KEGG=Os12t0133900-01
Chr12	irgsp1_rep	five_prime_UTR	1668883	1668952	.	-	.	Parent=Os12t0133900-01
Chr12	irgsp1_rep	CDS	1668172	1668882	.	-	0	Parent=Os12t0133900-01
Chr12	irgsp1_rep	CDS	1667815	1667870	.	-	0	Parent=Os12t0133900-01
Chr12	irgsp1_rep	CDS	1666694	1666817	.	-	1	Parent=Os12t0133900-01
Chr12	irgsp1_rep	CDS	1666499	1666609	.	-	0	Parent=Os12t0133900-01
Chr12	irgsp1_rep	CDS	1666238	1666375	.	-	0	Parent=Os12t0133900-01
Chr12	irgsp1_rep	CDS	1666005	1666073	.	-	0	Parent=Os12t0133900-01
Chr12	irgsp1_rep	CDS	1665866	1665907	.	-	0	Parent=Os12t0133900-01
Chr12	irgsp1_rep	CDS	1665691	1665759	.	-	0	Parent=Os12t0133900-01
Chr12	irgsp1_rep	CDS	1664895	1664966	.	-	0	Parent=Os12t0133900-01
Chr12	irgsp1_rep	CDS	1664756	1664809	.	-	0	Parent=Os12t0133900-01
Chr12	irgsp1_rep	CDS	1664536	1664677	.	-	0	Parent=Os12t0133900-01
Chr12	irgsp1_rep	CDS	1664261	1664301	.	-	2	Parent=Os12t0133900-01
Chr12	irgsp1_rep	three_prime_UTR	1663836	1664260	.	-	.	Parent=Os12t0133900-01
Chr12	irgsp1_rep	mRNA	1664536	1668291	.	+	.	ID=Os12t0133950-00;Name=Os12t0133950-00;Locus_id=Os12g0133950;Note=Non-protein coding transcript.;Transcript_evidence=BT016200 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0133950-00
Chr12	irgsp1_rep	exon	1664536	1664670	.	+	.	Parent=Os12t0133950-00
Chr12	irgsp1_rep	exon	1664744	1664807	.	+	.	Parent=Os12t0133950-00
Chr12	irgsp1_rep	exon	1664893	1664958	.	+	.	Parent=Os12t0133950-00
Chr12	irgsp1_rep	exon	1665678	1665756	.	+	.	Parent=Os12t0133950-00
Chr12	irgsp1_rep	exon	1665859	1665904	.	+	.	Parent=Os12t0133950-00
Chr12	irgsp1_rep	exon	1666000	1666061	.	+	.	Parent=Os12t0133950-00
Chr12	irgsp1_rep	exon	1666222	1666373	.	+	.	Parent=Os12t0133950-00
Chr12	irgsp1_rep	exon	1666497	1666602	.	+	.	Parent=Os12t0133950-00
Chr12	irgsp1_rep	exon	1666682	1666838	.	+	.	Parent=Os12t0133950-00
Chr12	irgsp1_rep	exon	1668179	1668291	.	+	.	Parent=Os12t0133950-00
Chr12	irgsp1_rep	mRNA	1671493	1675147	.	+	.	ID=Os12t0134000-01;Name=Os12t0134000-01;Locus_id=Os12g0134000;Note=Similar to Hydroxymethylglutaryl-CoA lyase.;Transcript_evidence=AK066940 (DDBJ%2C Best hit);ORF_evidence=B6TKJ5 (UniProt);NIAS_FLcDNA=J013090D23;TENOR=Os12t0134000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	1671493	1671627	.	+	.	Parent=Os12t0134000-01
Chr12	irgsp1_rep	five_prime_UTR	1672211	1672211	.	+	.	Parent=Os12t0134000-01
Chr12	irgsp1_rep	CDS	1672212	1672330	.	+	0	Parent=Os12t0134000-01
Chr12	irgsp1_rep	CDS	1672594	1672726	.	+	1	Parent=Os12t0134000-01
Chr12	irgsp1_rep	CDS	1672799	1672822	.	+	0	Parent=Os12t0134000-01
Chr12	irgsp1_rep	three_prime_UTR	1672823	1672868	.	+	.	Parent=Os12t0134000-01
Chr12	irgsp1_rep	three_prime_UTR	1672992	1673171	.	+	.	Parent=Os12t0134000-01
Chr12	irgsp1_rep	three_prime_UTR	1673613	1673693	.	+	.	Parent=Os12t0134000-01
Chr12	irgsp1_rep	three_prime_UTR	1673831	1673994	.	+	.	Parent=Os12t0134000-01
Chr12	irgsp1_rep	three_prime_UTR	1674090	1674226	.	+	.	Parent=Os12t0134000-01
Chr12	irgsp1_rep	three_prime_UTR	1674473	1674588	.	+	.	Parent=Os12t0134000-01
Chr12	irgsp1_rep	three_prime_UTR	1674706	1675147	.	+	.	Parent=Os12t0134000-01
Chr12	irgsp1_rep	mRNA	1673082	1675149	.	+	.	ID=Os12t0134000-02;Name=Os12t0134000-02;Locus_id=Os12g0134000;Note=Similar to hydroxymethylglutaryl-CoA lyase.;Transcript_evidence=AK061875 (DDBJ%2C Best hit);ORF_evidence=B6TKJ5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Pyruvate carboxyltransferase (IPR000891),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=001-041-A08;Expression=AK061875;TENOR=Os12t0134000-02;KEGG=Os12t0134000-02 (EC:4.1.3.4)
Chr12	irgsp1_rep	CDS	1673082	1673171	.	+	0	Parent=Os12t0134000-02
Chr12	irgsp1_rep	CDS	1673613	1673693	.	+	0	Parent=Os12t0134000-02
Chr12	irgsp1_rep	CDS	1673831	1673994	.	+	0	Parent=Os12t0134000-02
Chr12	irgsp1_rep	CDS	1674090	1674226	.	+	1	Parent=Os12t0134000-02
Chr12	irgsp1_rep	CDS	1674473	1674588	.	+	2	Parent=Os12t0134000-02
Chr12	irgsp1_rep	CDS	1674706	1674939	.	+	0	Parent=Os12t0134000-02
Chr12	irgsp1_rep	three_prime_UTR	1674940	1675149	.	+	.	Parent=Os12t0134000-02
Chr12	irgsp1_rep	mRNA	1675882	1682675	.	-	.	ID=Os12t0134200-01;Name=Os12t0134200-01;Locus_id=Os12g0134200;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=AK105296 (DDBJ%2C Best hit);ORF_evidence=Q2RAU4 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=001-116-G12;Expression=AK105296;TENOR=Os12t0134200-01;KEGG=Os12t0134200-01
Chr12	irgsp1_rep	five_prime_UTR	1682675	1682675	.	-	.	Parent=Os12t0134200-01
Chr12	irgsp1_rep	CDS	1682555	1682674	.	-	0	Parent=Os12t0134200-01
Chr12	irgsp1_rep	CDS	1681734	1681901	.	-	0	Parent=Os12t0134200-01
Chr12	irgsp1_rep	CDS	1681332	1681625	.	-	0	Parent=Os12t0134200-01
Chr12	irgsp1_rep	CDS	1680757	1680933	.	-	0	Parent=Os12t0134200-01
Chr12	irgsp1_rep	CDS	1680357	1680620	.	-	0	Parent=Os12t0134200-01
Chr12	irgsp1_rep	CDS	1680122	1680220	.	-	0	Parent=Os12t0134200-01
Chr12	irgsp1_rep	CDS	1679835	1680019	.	-	0	Parent=Os12t0134200-01
Chr12	irgsp1_rep	CDS	1679390	1679725	.	-	1	Parent=Os12t0134200-01
Chr12	irgsp1_rep	CDS	1679071	1679224	.	-	1	Parent=Os12t0134200-01
Chr12	irgsp1_rep	CDS	1678871	1678981	.	-	0	Parent=Os12t0134200-01
Chr12	irgsp1_rep	CDS	1678550	1678717	.	-	0	Parent=Os12t0134200-01
Chr12	irgsp1_rep	CDS	1677749	1677875	.	-	0	Parent=Os12t0134200-01
Chr12	irgsp1_rep	CDS	1677302	1677460	.	-	2	Parent=Os12t0134200-01
Chr12	irgsp1_rep	CDS	1677084	1677187	.	-	2	Parent=Os12t0134200-01
Chr12	irgsp1_rep	CDS	1676924	1676983	.	-	0	Parent=Os12t0134200-01
Chr12	irgsp1_rep	CDS	1676058	1676270	.	-	0	Parent=Os12t0134200-01
Chr12	irgsp1_rep	three_prime_UTR	1675882	1676057	.	-	.	Parent=Os12t0134200-01
Chr12	irgsp1_rep	mRNA	1692017	1710199	.	+	.	ID=Os12t0134300-00;Name=Os12t0134300-00;Locus_id=Os12g0134300;Note=Conserved hypothetical protein.;Transcript_evidence=BT036567 (DDBJ);ORF_evidence=Q2QY28 (UniProt);TENOR=Os12t0134300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	1692017	1692134	.	+	.	Parent=Os12t0134300-00
Chr12	irgsp1_rep	five_prime_UTR	1693286	1693389	.	+	.	Parent=Os12t0134300-00
Chr12	irgsp1_rep	CDS	1693390	1693395	.	+	0	Parent=Os12t0134300-00
Chr12	irgsp1_rep	CDS	1694627	1694752	.	+	0	Parent=Os12t0134300-00
Chr12	irgsp1_rep	CDS	1709308	1709493	.	+	0	Parent=Os12t0134300-00
Chr12	irgsp1_rep	CDS	1709771	1709942	.	+	0	Parent=Os12t0134300-00
Chr12	irgsp1_rep	CDS	1710057	1710097	.	+	2	Parent=Os12t0134300-00
Chr12	irgsp1_rep	three_prime_UTR	1710098	1710199	.	+	.	Parent=Os12t0134300-00
Chr12	irgsp1_rep	mRNA	1712500	1712991	.	-	.	ID=Os12t0134500-00;Name=Os12t0134500-00;Locus_id=Os12g0134500;Note=Similar to Zinc finger%2C C3HC4 type family protein.;Transcript_evidence=AK358384 (DDBJ);ORF_evidence=Q2RAT8 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);TENOR=Os12t0134500-00
Chr12	irgsp1_rep	CDS	1712500	1712991	.	-	0	Parent=Os12t0134500-00
Chr12	irgsp1_rep	mRNA	1713136	1714665	.	-	.	ID=Os12t0134700-01;Name=Os12t0134700-01;Locus_id=Os12g0134700;Note=Transferase family protein.;Transcript_evidence=AK109609 (DDBJ%2C Best hit);ORF_evidence=A2ZHV5 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=002-137-F12;Expression=AK109609;TENOR=Os12t0134700-01;KEGG=Os12t0134700-01
Chr12	irgsp1_rep	five_prime_UTR	1714623	1714665	.	-	.	Parent=Os12t0134700-01
Chr12	irgsp1_rep	CDS	1713282	1714622	.	-	0	Parent=Os12t0134700-01
Chr12	irgsp1_rep	three_prime_UTR	1713136	1713281	.	-	.	Parent=Os12t0134700-01
Chr12	irgsp1_rep	mRNA	1716158	1718032	.	+	.	ID=Os12t0134900-01;Name=Os12t0134900-01;Locus_id=Os12g0134900;CGSNL Gene Symbol=CYP94D5B;CGSNL Gene Name=CYTOCHROME P450 94D5B;Oryzabase Gene Symbol Synonym(s)=OsCYP94D5b;Oryzabase Gene Name Synonym(s)=CytoChrome P450 94D5b;Note=CytoChrome P450 family protein.;Transcript_evidence=AK289233 (DDBJ%2C Best hit);ORF_evidence=Q2RAT5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J100071N06;Oryzabase=23106;TENOR=Os12t0134900-01;KEGG=Os12t0134900-01
Chr12	irgsp1_rep	five_prime_UTR	1716158	1716185	.	+	.	Parent=Os12t0134900-01
Chr12	irgsp1_rep	CDS	1716186	1717742	.	+	0	Parent=Os12t0134900-01
Chr12	irgsp1_rep	three_prime_UTR	1717743	1718032	.	+	.	Parent=Os12t0134900-01
Chr12	irgsp1_rep	mRNA	1718307	1719716	.	-	.	ID=Os12t0135000-01;Name=Os12t0135000-01;Locus_id=Os12g0135000;Note=Hypothetical conserved gene.;Transcript_evidence=AK110747 (DDBJ%2C Best hit);ORF_evidence=B8BLY1 (UniProt);NIAS_FLcDNA=002-170-G02;Expression=AK110747;TENOR=Os12t0135000-01;KEGG=Os12t0135000-01
Chr12	irgsp1_rep	five_prime_UTR	1719622	1719716	.	-	.	Parent=Os12t0135000-01
Chr12	irgsp1_rep	CDS	1719449	1719621	.	-	0	Parent=Os12t0135000-01
Chr12	irgsp1_rep	CDS	1718833	1718836	.	-	1	Parent=Os12t0135000-01
Chr12	irgsp1_rep	three_prime_UTR	1718307	1718832	.	-	.	Parent=Os12t0135000-01
Chr12	irgsp1_rep	mRNA	1722709	1724168	.	-	.	ID=Os12t0135051-00;Name=Os12t0135051-00;Locus_id=Os12g0135051;Note=Similar to Phosphoglycerate mutase family protein%2C expressed.;Transcript_evidence=EU956199 (DDBJ);ORF_evidence=Q2RAT6 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Phosphoglycerate/bisphosphoglycerate mutase%2C active site (IPR001345),Histidine phosphatase superfamily%2C clade-1 (IPR013078);TENOR=Os12t0135051-00
Chr12	irgsp1_rep	CDS	1723929	1724168	.	-	0	Parent=Os12t0135051-00
Chr12	irgsp1_rep	CDS	1723772	1723822	.	-	0	Parent=Os12t0135051-00
Chr12	irgsp1_rep	CDS	1723533	1723643	.	-	0	Parent=Os12t0135051-00
Chr12	irgsp1_rep	CDS	1723445	1723450	.	-	0	Parent=Os12t0135051-00
Chr12	irgsp1_rep	three_prime_UTR	1723308	1723444	.	-	.	Parent=Os12t0135051-00
Chr12	irgsp1_rep	three_prime_UTR	1723071	1723146	.	-	.	Parent=Os12t0135051-00
Chr12	irgsp1_rep	three_prime_UTR	1722709	1722938	.	-	.	Parent=Os12t0135051-00
Chr12	irgsp1_rep	mRNA	1727794	1729205	.	-	.	ID=Os12t0135100-00;Name=Os12t0135100-00;Locus_id=Os12g0135100;Note=Similar to Phosphoglycerate mutase family protein.;Transcript_evidence=BT062522 (DDBJ);ORF_evidence=Q2QY22 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Phosphoglycerate/bisphosphoglycerate mutase%2C active site (IPR001345),Histidine phosphatase superfamily%2C clade-1 (IPR013078);TENOR=Os12t0135100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	1729095	1729205	.	-	0	Parent=Os12t0135100-00
Chr12	irgsp1_rep	CDS	1728873	1728923	.	-	0	Parent=Os12t0135100-00
Chr12	irgsp1_rep	CDS	1728646	1728756	.	-	0	Parent=Os12t0135100-00
Chr12	irgsp1_rep	CDS	1728435	1728566	.	-	0	Parent=Os12t0135100-00
Chr12	irgsp1_rep	CDS	1728219	1728336	.	-	0	Parent=Os12t0135100-00
Chr12	irgsp1_rep	CDS	1727837	1728063	.	-	2	Parent=Os12t0135100-00
Chr12	irgsp1_rep	three_prime_UTR	1727794	1727836	.	-	.	Parent=Os12t0135100-00
Chr12	irgsp1_rep	mRNA	1732197	1733659	.	+	.	ID=Os12t0135200-01;Name=Os12t0135200-01;Locus_id=Os12g0135200;Oryzabase Gene Symbol Synonym(s)=OsFbox641%2C Os_F0319;Oryzabase Gene Name Synonym(s)=F-box protein 641;Note=Kelch-type beta propeller domain containing protein.;Transcript_evidence=AK242557 (DDBJ%2C Best hit);ORF_evidence=Q2QY21 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Kelch repeat type 1 (IPR006652),Kelch-type beta propeller (IPR015915),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J090001E19;Oryzabase=17402;TENOR=Os12t0135200-01;KEGG=Os12t0135200-01
Chr12	irgsp1_rep	five_prime_UTR	1732197	1732268	.	+	.	Parent=Os12t0135200-01
Chr12	irgsp1_rep	CDS	1732269	1733516	.	+	0	Parent=Os12t0135200-01
Chr12	irgsp1_rep	three_prime_UTR	1733517	1733659	.	+	.	Parent=Os12t0135200-01
Chr12	irgsp1_rep	mRNA	1734155	1738927	.	+	.	ID=Os12t0135300-00;Name=Os12t0135300-00;Locus_id=Os12g0135300;Note=Similar to Kelch motif family protein.;Transcript_evidence=AK354388 (DDBJ);ORF_evidence=Q2QY21 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);TENOR=Os12t0135300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	1734155	1734901	.	+	0	Parent=Os12t0135300-00
Chr12	irgsp1_rep	CDS	1738391	1738927	.	+	0	Parent=Os12t0135300-00
Chr12	irgsp1_rep	mRNA	1739704	1741127	.	+	.	ID=Os12t0135500-00;Name=Os12t0135500-00;Locus_id=Os12g0135500;Note=Similar to cDNA clone:006-207-G09%2C full insert sequence.;Transcript_evidence=AK059449 (DDBJ%2C Secondary hit);ORF_evidence=A2ZB84 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Alpha/beta hydrolase fold-3 (IPR013094);Expression=AK059449;TENOR=Os12t0135500-00;KEGG=Os12t0135500-00
Chr12	irgsp1_rep	five_prime_UTR	1739704	1739761	.	+	.	Parent=Os12t0135500-00
Chr12	irgsp1_rep	CDS	1739762	1740245	.	+	0	Parent=Os12t0135500-00
Chr12	irgsp1_rep	CDS	1740266	1740849	.	+	2	Parent=Os12t0135500-00
Chr12	irgsp1_rep	three_prime_UTR	1740850	1740879	.	+	.	Parent=Os12t0135500-00
Chr12	irgsp1_rep	three_prime_UTR	1740893	1741127	.	+	.	Parent=Os12t0135500-00
Chr12	irgsp1_rep	mRNA	1744928	1746393	.	-	.	ID=Os12t0135700-01;Name=Os12t0135700-01;Locus_id=Os12g0135700;Note=Hypothetical protein.;Transcript_evidence=AK101030 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023150J02;Expression=AK101030;TENOR=Os12t0135700-01;KEGG=Os12t0135700-01
Chr12	irgsp1_rep	five_prime_UTR	1746228	1746393	.	-	.	Parent=Os12t0135700-01
Chr12	irgsp1_rep	CDS	1745655	1746227	.	-	0	Parent=Os12t0135700-01
Chr12	irgsp1_rep	three_prime_UTR	1744928	1745654	.	-	.	Parent=Os12t0135700-01
Chr12	irgsp1_rep	mRNA	1745261	1746538	.	+	.	ID=Os12t0135800-01;Name=Os12t0135800-01;Locus_id=Os12g0135800;Note=Alpha/beta hydrolase fold-3 domain containing protein.;Transcript_evidence=AK061124 (DDBJ%2C Best hit);ORF_evidence=B8BLY4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=006-207-G09;TENOR=Os12t0135800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	1745261	1745304	.	+	.	Parent=Os12t0135800-01
Chr12	irgsp1_rep	CDS	1745305	1746387	.	+	0	Parent=Os12t0135800-01
Chr12	irgsp1_rep	three_prime_UTR	1746388	1746538	.	+	.	Parent=Os12t0135800-01
Chr12	irgsp1_rep	mRNA	1746567	1747175	.	+	.	ID=Os12t0135850-00;Name=Os12t0135850-00;Locus_id=Os12g0135850;Note=Similar to No apical meristem protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QSX2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);TENOR=Os12t0135850-00;KEGG=Os12t0135850-00
Chr12	irgsp1_rep	CDS	1746567	1747175	.	+	0	Parent=Os12t0135850-00
Chr12	irgsp1_rep	mRNA	1747416	1749901	.	-	.	ID=Os12t0135900-00;Name=Os12t0135900-00;Locus_id=Os12g0135900;Note=Similar to 50S ribosomal protein L24.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QY18 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L24 (IPR003256),KOW (IPR005824),Ribosomal protein L24/L26%2C conserved site (IPR005825),Translation protein SH3-like (IPR008991),Ribosomal protein L24%2C SH3-like (IPR014723);TENOR=Os12t0135900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	1749842	1749901	.	-	0	Parent=Os12t0135900-00
Chr12	irgsp1_rep	CDS	1749659	1749754	.	-	0	Parent=Os12t0135900-00
Chr12	irgsp1_rep	CDS	1748313	1748416	.	-	0	Parent=Os12t0135900-00
Chr12	irgsp1_rep	CDS	1748066	1748202	.	-	1	Parent=Os12t0135900-00
Chr12	irgsp1_rep	CDS	1747416	1747498	.	-	2	Parent=Os12t0135900-00
Chr12	irgsp1_rep	mRNA	1751754	1753140	.	+	.	ID=Os12t0136100-00;Name=Os12t0136100-00;Locus_id=Os12g0136100;Note=Similar to Plastidic phosphate translocator-like protein1.;Transcript_evidence=AK363329 (DDBJ);ORF_evidence=NP_001159001.1 (RefSeq);InterPro=Domain of unknown function DUF250 (IPR004853);TENOR=Os12t0136100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	1751754	1753040	.	+	0	Parent=Os12t0136100-00
Chr12	irgsp1_rep	three_prime_UTR	1753041	1753140	.	+	.	Parent=Os12t0136100-00
Chr12	irgsp1_rep	mRNA	1755564	1759645	.	+	.	ID=Os12t0136200-01;Name=Os12t0136200-01;Locus_id=Os12g0136200;Note=Similar to RNA recognition motif family protein%2C expressed.;Transcript_evidence=AK068700 (DDBJ%2C Best hit);ORF_evidence=Q2QY16 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013160I09;Expression=AK068700;TENOR=Os12t0136200-01;KEGG=Os12t0136200-01
Chr12	irgsp1_rep	five_prime_UTR	1755564	1756685	.	+	.	Parent=Os12t0136200-01
Chr12	irgsp1_rep	CDS	1756686	1757102	.	+	0	Parent=Os12t0136200-01
Chr12	irgsp1_rep	CDS	1757185	1757295	.	+	0	Parent=Os12t0136200-01
Chr12	irgsp1_rep	CDS	1757905	1758045	.	+	0	Parent=Os12t0136200-01
Chr12	irgsp1_rep	CDS	1758124	1758294	.	+	0	Parent=Os12t0136200-01
Chr12	irgsp1_rep	CDS	1758394	1758598	.	+	0	Parent=Os12t0136200-01
Chr12	irgsp1_rep	CDS	1758720	1758892	.	+	2	Parent=Os12t0136200-01
Chr12	irgsp1_rep	CDS	1759003	1759085	.	+	0	Parent=Os12t0136200-01
Chr12	irgsp1_rep	CDS	1759232	1759439	.	+	1	Parent=Os12t0136200-01
Chr12	irgsp1_rep	three_prime_UTR	1759440	1759645	.	+	.	Parent=Os12t0136200-01
Chr12	irgsp1_rep	mRNA	1755621	1759670	.	+	.	ID=Os12t0136200-02;Name=Os12t0136200-02;Locus_id=Os12g0136200;Note=Similar to RNA recognition motif family protein%2C expressed.;Transcript_evidence=AK069493 (DDBJ%2C Best hit);ORF_evidence=Q2QY16 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J023024M07;TENOR=Os12t0136200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	1755621	1755673	.	+	.	Parent=Os12t0136200-02
Chr12	irgsp1_rep	five_prime_UTR	1756359	1756459	.	+	.	Parent=Os12t0136200-02
Chr12	irgsp1_rep	five_prime_UTR	1756659	1756685	.	+	.	Parent=Os12t0136200-02
Chr12	irgsp1_rep	CDS	1756686	1757102	.	+	0	Parent=Os12t0136200-02
Chr12	irgsp1_rep	CDS	1757185	1757295	.	+	0	Parent=Os12t0136200-02
Chr12	irgsp1_rep	CDS	1757905	1758045	.	+	0	Parent=Os12t0136200-02
Chr12	irgsp1_rep	CDS	1758124	1758294	.	+	0	Parent=Os12t0136200-02
Chr12	irgsp1_rep	CDS	1758394	1758598	.	+	0	Parent=Os12t0136200-02
Chr12	irgsp1_rep	CDS	1758720	1758892	.	+	2	Parent=Os12t0136200-02
Chr12	irgsp1_rep	CDS	1759003	1759085	.	+	0	Parent=Os12t0136200-02
Chr12	irgsp1_rep	CDS	1759232	1759439	.	+	1	Parent=Os12t0136200-02
Chr12	irgsp1_rep	three_prime_UTR	1759440	1759670	.	+	.	Parent=Os12t0136200-02
Chr12	irgsp1_rep	mRNA	1757970	1759670	.	+	.	ID=Os12t0136200-03;Name=Os12t0136200-03;Locus_id=Os12g0136200;Note=Similar to RNA recognition motif family protein%2C expressed.;Transcript_evidence=AK059978 (DDBJ%2C Best hit);ORF_evidence=Q2QY16 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=006-212-B08;Expression=AK059978;TENOR=Os12t0136200-03;KEGG=Os12t0136200-03
Chr12	irgsp1_rep	five_prime_UTR	1757970	1757970	.	+	.	Parent=Os12t0136200-03
Chr12	irgsp1_rep	CDS	1757971	1758045	.	+	0	Parent=Os12t0136200-03
Chr12	irgsp1_rep	CDS	1758124	1758294	.	+	0	Parent=Os12t0136200-03
Chr12	irgsp1_rep	CDS	1758394	1758598	.	+	0	Parent=Os12t0136200-03
Chr12	irgsp1_rep	CDS	1758720	1758892	.	+	2	Parent=Os12t0136200-03
Chr12	irgsp1_rep	CDS	1759003	1759085	.	+	0	Parent=Os12t0136200-03
Chr12	irgsp1_rep	CDS	1759232	1759439	.	+	1	Parent=Os12t0136200-03
Chr12	irgsp1_rep	three_prime_UTR	1759440	1759670	.	+	.	Parent=Os12t0136200-03
Chr12	irgsp1_rep	mRNA	1765559	1767686	.	-	.	ID=Os12t0136300-01;Name=Os12t0136300-01;Locus_id=Os12g0136300;Note=Hypothetical protein.;Transcript_evidence=AK106901 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-118-H08;Expression=AK106901;TENOR=Os12t0136300-01;KEGG=Os12t0136300-01
Chr12	irgsp1_rep	five_prime_UTR	1767653	1767686	.	-	.	Parent=Os12t0136300-01
Chr12	irgsp1_rep	CDS	1766027	1767652	.	-	0	Parent=Os12t0136300-01
Chr12	irgsp1_rep	three_prime_UTR	1765559	1766026	.	-	.	Parent=Os12t0136300-01
Chr12	irgsp1_rep	mRNA	1772560	1774555	.	-	.	ID=Os12t0136500-01;Name=Os12t0136500-01;Locus_id=Os12g0136500;Note=Non-protein coding transcript.;Transcript_evidence=AK066751 (DDBJ%2C Best hit),AK072775 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013075G12,J023139B04;TENOR=Os12t0136500-01
Chr12	irgsp1_rep	exon	1772560	1774555	.	-	.	Parent=Os12t0136500-01
Chr12	irgsp1_rep	mRNA	1776606	1777703	.	-	.	ID=Os12t0136600-01;Name=Os12t0136600-01;Locus_id=Os12g0136600;Note=Similar to cDNA clone:002-116-A09%2C full insert sequence.;Transcript_evidence=AK064762 (DDBJ%2C Best hit);ORF_evidence=B7E9V8 (UniProt);GO=Cellular Component: mitochondrial matrix (GO:0005759);InterPro=Mitochondrial glycoprotein (IPR003428);NIAS_FLcDNA=002-120-H04;Expression=AK064762;TENOR=Os12t0136600-01;KEGG=Os12t0136600-01
Chr12	irgsp1_rep	five_prime_UTR	1777601	1777703	.	-	.	Parent=Os12t0136600-01
Chr12	irgsp1_rep	CDS	1777163	1777600	.	-	0	Parent=Os12t0136600-01
Chr12	irgsp1_rep	three_prime_UTR	1776606	1777162	.	-	.	Parent=Os12t0136600-01
Chr12	irgsp1_rep	mRNA	1783558	1789565	.	+	.	ID=Os12t0136900-00;Name=Os12t0136900-00;Locus_id=Os12g0136900;CGSNL Gene Symbol=ACA5;CGSNL Gene Name=CA2+-ATPASE 5;Oryzabase Gene Symbol Synonym(s)=osACA5%2C OsACA9%2C OsACA5%2C OsPM12ATP4;Oryzabase Gene Name Synonym(s)=Ca2+ P-Type ATPase 5%2C vacuolar Ca2+-ATPase 5;Note=Similar to Calcium-transporting ATPase 4%2C plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 4).;Transcript_evidence=AK332621 (DDBJ);ORF_evidence=XP_002322655.1 (RefSeq);GO=Biological Process: ATP biosynthetic process (GO:0006754),Biological Process: cation transport (GO:0006812),Biological Process: calcium ion transmembrane transport (GO:0070588),Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: calcium-transporting ATPase activity (GO:0005388),Molecular Function: calmodulin binding (GO:0005516),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C catalyzing transmembrane movement of substances (GO:0016820),Molecular Function: metal ion binding (GO:0046872);InterPro=ATPase%2C P-type%2C H+ transporting proton pump (IPR000695),ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),ATPase%2C P-type cation-transporter%2C N-terminal (IPR004014),ATPase%2C P-type cation-transporter%2C C-terminal (IPR006068),ATPase%2C P-type%2C calcium-transporting%2C PMCA-type (IPR006408),ATPase%2C P-type%2C ATPase-associated domain (IPR008250),ATPase%2C P-type phosphorylation site (IPR018303),HAD-like domain (IPR023214),ATPase%2C P-type%2C  transmembrane domain (IPR023298),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C  P-type%2C cytoplasmic transduction domain A (IPR023300),ATPase%2C cation-transporting%2C domain N (IPR023306),Calcium-transporting ATPase%2C N-terminal autoinhibitory domain (IPR024750);Oryzabase=13237;TENOR=Os12t0136900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	1783558	1783574	.	+	.	Parent=Os12t0136900-00
Chr12	irgsp1_rep	CDS	1783575	1783760	.	+	0	Parent=Os12t0136900-00
Chr12	irgsp1_rep	CDS	1785924	1785978	.	+	0	Parent=Os12t0136900-00
Chr12	irgsp1_rep	CDS	1786068	1788010	.	+	2	Parent=Os12t0136900-00
Chr12	irgsp1_rep	CDS	1788085	1788243	.	+	0	Parent=Os12t0136900-00
Chr12	irgsp1_rep	CDS	1788414	1788585	.	+	0	Parent=Os12t0136900-00
Chr12	irgsp1_rep	CDS	1788687	1788985	.	+	2	Parent=Os12t0136900-00
Chr12	irgsp1_rep	CDS	1789260	1789565	.	+	0	Parent=Os12t0136900-00
Chr12	irgsp1_rep	mRNA	1788432	1788802	.	-	.	ID=Os12t0136950-00;Name=Os12t0136950-00;Locus_id=Os12g0136950;Note=Non-protein coding transcript.;Transcript_evidence=EU971904 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0136950-00
Chr12	irgsp1_rep	exon	1788432	1788802	.	-	.	Parent=Os12t0136950-00
Chr12	irgsp1_rep	mRNA	1790096	1791193	.	-	.	ID=Os12t0137000-00;Name=Os12t0137000-00;Locus_id=Os12g0137000;CGSNL Gene Symbol=NAC133;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 133;Oryzabase Gene Symbol Synonym(s)=ONAC133;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 133;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QY11 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);Oryzabase=15892;TENOR=Os12t0137000-00;KEGG=Os12t0137000-00
Chr12	irgsp1_rep	CDS	1790096	1791193	.	-	0	Parent=Os12t0137000-00
Chr12	irgsp1_rep	mRNA	1794439	1797343	.	-	.	ID=Os12t0137100-01;Name=Os12t0137100-01;Locus_id=Os12g0137100;CGSNL Gene Symbol=CBP;CGSNL Gene Name=CALCIUM-BINDING PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsCBP;Oryzabase Gene Name Synonym(s)=calcium-binding protein;Note=EF-Hand type domain containing protein.;Transcript_evidence=AK059278 (DDBJ%2C Best hit);ORF_evidence=NP_001147282.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=001-025-C08;Oryzabase=10234;Expression=AK059278;TENOR=Os12t0137100-01;KEGG=Os12t0137100-01
Chr12	irgsp1_rep	five_prime_UTR	1797274	1797343	.	-	.	Parent=Os12t0137100-01
Chr12	irgsp1_rep	CDS	1796742	1797273	.	-	0	Parent=Os12t0137100-01
Chr12	irgsp1_rep	CDS	1795683	1795729	.	-	2	Parent=Os12t0137100-01
Chr12	irgsp1_rep	CDS	1795406	1795581	.	-	0	Parent=Os12t0137100-01
Chr12	irgsp1_rep	CDS	1794790	1794808	.	-	1	Parent=Os12t0137100-01
Chr12	irgsp1_rep	CDS	1794594	1794698	.	-	0	Parent=Os12t0137100-01
Chr12	irgsp1_rep	three_prime_UTR	1794439	1794593	.	-	.	Parent=Os12t0137100-01
Chr12	irgsp1_rep	mRNA	1802714	1807513	.	+	.	ID=Os12t0137200-01;Name=Os12t0137200-01;Locus_id=Os12g0137200;Note=Similar to Saccharopine dehydrogenase family protein%2C expressed.;Transcript_evidence=AK241652 (DDBJ%2C Best hit);ORF_evidence=Q2QY08 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Saccharopine dehydrogenase / Homospermidine synthase (IPR005097),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J065191C03;TENOR=Os12t0137200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	1802714	1802778	.	+	.	Parent=Os12t0137200-01
Chr12	irgsp1_rep	CDS	1802779	1802996	.	+	0	Parent=Os12t0137200-01
Chr12	irgsp1_rep	CDS	1803296	1803393	.	+	1	Parent=Os12t0137200-01
Chr12	irgsp1_rep	CDS	1803538	1803620	.	+	2	Parent=Os12t0137200-01
Chr12	irgsp1_rep	CDS	1803712	1803838	.	+	0	Parent=Os12t0137200-01
Chr12	irgsp1_rep	CDS	1804150	1804213	.	+	2	Parent=Os12t0137200-01
Chr12	irgsp1_rep	CDS	1804329	1804426	.	+	1	Parent=Os12t0137200-01
Chr12	irgsp1_rep	CDS	1804508	1804592	.	+	2	Parent=Os12t0137200-01
Chr12	irgsp1_rep	CDS	1804705	1804828	.	+	1	Parent=Os12t0137200-01
Chr12	irgsp1_rep	CDS	1805135	1805236	.	+	0	Parent=Os12t0137200-01
Chr12	irgsp1_rep	CDS	1805851	1805915	.	+	0	Parent=Os12t0137200-01
Chr12	irgsp1_rep	CDS	1806417	1806498	.	+	1	Parent=Os12t0137200-01
Chr12	irgsp1_rep	CDS	1806963	1807042	.	+	0	Parent=Os12t0137200-01
Chr12	irgsp1_rep	CDS	1807140	1807197	.	+	1	Parent=Os12t0137200-01
Chr12	irgsp1_rep	three_prime_UTR	1807198	1807513	.	+	.	Parent=Os12t0137200-01
Chr12	irgsp1_rep	mRNA	1807696	1811160	.	-	.	ID=Os12t0137300-01;Name=Os12t0137300-01;Locus_id=Os12g0137300;Note=Similar to CytoChrome c-type biogenesis ccda-like chloroplastic protein 1.;Transcript_evidence=AK065385 (DDBJ%2C Best hit);ORF_evidence=Q2RAR6 (UniProt);GO=Biological Process: cytoChrome complex assembly (GO:0017004),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: membrane (GO:0016020);InterPro=CytoChrome c assembly protein%2C transmembrane domain (IPR003834);NIAS_FLcDNA=J013023F24;TENOR=Os12t0137300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	1811160	1811160	.	-	.	Parent=Os12t0137300-01
Chr12	irgsp1_rep	CDS	1810853	1811159	.	-	0	Parent=Os12t0137300-01
Chr12	irgsp1_rep	CDS	1810695	1810750	.	-	2	Parent=Os12t0137300-01
Chr12	irgsp1_rep	CDS	1810326	1810453	.	-	0	Parent=Os12t0137300-01
Chr12	irgsp1_rep	CDS	1810118	1810204	.	-	1	Parent=Os12t0137300-01
Chr12	irgsp1_rep	CDS	1809985	1810015	.	-	1	Parent=Os12t0137300-01
Chr12	irgsp1_rep	CDS	1809666	1809827	.	-	0	Parent=Os12t0137300-01
Chr12	irgsp1_rep	CDS	1809211	1809249	.	-	0	Parent=Os12t0137300-01
Chr12	irgsp1_rep	three_prime_UTR	1808782	1809210	.	-	.	Parent=Os12t0137300-01
Chr12	irgsp1_rep	three_prime_UTR	1808561	1808607	.	-	.	Parent=Os12t0137300-01
Chr12	irgsp1_rep	three_prime_UTR	1807696	1808073	.	-	.	Parent=Os12t0137300-01
Chr12	irgsp1_rep	mRNA	1814889	1815861	.	+	.	ID=Os12t0137400-00;Name=Os12t0137400-00;Locus_id=Os12g0137400;Note=Conserved hypothetical protein.;Transcript_evidence=FP092664 (DDBJ);ORF_evidence=Q2QY05 (UniProt);TENOR=Os12t0137400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	1814889	1815812	.	+	0	Parent=Os12t0137400-00
Chr12	irgsp1_rep	three_prime_UTR	1815813	1815861	.	+	.	Parent=Os12t0137400-00
Chr12	irgsp1_rep	mRNA	1817618	1821687	.	+	.	ID=Os12t0137500-01;Name=Os12t0137500-01;Locus_id=Os12g0137500;Note=Similar to Avr9/Cf-9 rapidly elicited protein 271 (Fragment).;Transcript_evidence=AK242643 (DDBJ%2C Best hit);ORF_evidence=Q84PC7 (UniProt);GO=Biological Process: regulation of signal transduction (GO:0009966);InterPro=TAP42-like protein (IPR007304);NIAS_FLcDNA=J090024N03;TENOR=Os12t0137500-01;KEGG=Os12t0137500-01
Chr12	irgsp1_rep	five_prime_UTR	1817618	1817706	.	+	.	Parent=Os12t0137500-01
Chr12	irgsp1_rep	CDS	1817707	1817865	.	+	0	Parent=Os12t0137500-01
Chr12	irgsp1_rep	CDS	1817974	1818096	.	+	0	Parent=Os12t0137500-01
Chr12	irgsp1_rep	CDS	1818209	1818295	.	+	0	Parent=Os12t0137500-01
Chr12	irgsp1_rep	CDS	1818424	1818528	.	+	0	Parent=Os12t0137500-01
Chr12	irgsp1_rep	CDS	1818726	1818887	.	+	0	Parent=Os12t0137500-01
Chr12	irgsp1_rep	CDS	1819455	1819490	.	+	0	Parent=Os12t0137500-01
Chr12	irgsp1_rep	CDS	1819619	1819690	.	+	0	Parent=Os12t0137500-01
Chr12	irgsp1_rep	CDS	1820267	1820544	.	+	0	Parent=Os12t0137500-01
Chr12	irgsp1_rep	CDS	1821257	1821491	.	+	1	Parent=Os12t0137500-01
Chr12	irgsp1_rep	three_prime_UTR	1821492	1821687	.	+	.	Parent=Os12t0137500-01
Chr12	irgsp1_rep	mRNA	1822395	1823234	.	-	.	ID=Os12t0137600-00;Name=Os12t0137600-00;Locus_id=Os12g0137600;Note=Sulfotransferase family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2RAR0 (UniProt);GO=Molecular Function: sulfotransferase activity (GO:0008146);InterPro=Sulfotransferase domain (IPR000863);TENOR=Os12t0137600-00;KEGG=Os12t0137600-00
Chr12	irgsp1_rep	CDS	1822395	1823234	.	-	0	Parent=Os12t0137600-00
Chr12	irgsp1_rep	mRNA	1830784	1832039	.	-	.	ID=Os12t0137700-01;Name=Os12t0137700-01;Locus_id=Os12g0137700;Note=Sulfotransferase family protein.;Transcript_evidence=AK243653 (DDBJ%2C Best hit);ORF_evidence=Q2RAR0 (UniProt);GO=Molecular Function: sulfotransferase activity (GO:0008146);InterPro=Sulfotransferase domain (IPR000863);NIAS_FLcDNA=J100088J11;TENOR=Os12t0137700-01;KEGG=Os12t0137700-01
Chr12	irgsp1_rep	five_prime_UTR	1831978	1832039	.	-	.	Parent=Os12t0137700-01
Chr12	irgsp1_rep	CDS	1830964	1831977	.	-	0	Parent=Os12t0137700-01
Chr12	irgsp1_rep	three_prime_UTR	1830784	1830963	.	-	.	Parent=Os12t0137700-01
Chr12	irgsp1_rep	mRNA	1845295	1849516	.	+	.	ID=Os12t0138000-01;Name=Os12t0138000-01;Locus_id=Os12g0138000;Note=Hypothetical conserved gene.;Transcript_evidence=AK288670 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090058O04;TENOR=Os12t0138000-01;KEGG=Os12t0138000-01
Chr12	irgsp1_rep	five_prime_UTR	1845295	1845945	.	+	.	Parent=Os12t0138000-01
Chr12	irgsp1_rep	CDS	1845946	1846206	.	+	0	Parent=Os12t0138000-01
Chr12	irgsp1_rep	three_prime_UTR	1846207	1849516	.	+	.	Parent=Os12t0138000-01
Chr12	irgsp1_rep	mRNA	1851425	1855059	.	+	.	ID=Os12t0138050-00;Name=Os12t0138050-00;Locus_id=Os12g0138050;Note=Similar to EF hand family protein%2C expressed.;Transcript_evidence=FP093620 (DDBJ);ORF_evidence=Q2QXZ7 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);TENOR=Os12t0138050-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	1851425	1852008	.	+	0	Parent=Os12t0138050-00
Chr12	irgsp1_rep	CDS	1854807	1854939	.	+	1	Parent=Os12t0138050-00
Chr12	irgsp1_rep	three_prime_UTR	1854940	1855059	.	+	.	Parent=Os12t0138050-00
Chr12	irgsp1_rep	mRNA	1853601	1855079	.	-	.	ID=Os12t0138100-00;Name=Os12t0138100-00;Locus_id=Os12g0138100;CGSNL Gene Symbol=GRAS53;CGSNL Gene Name=GRAS PROTEIN 53;Oryzabase Gene Symbol Synonym(s)=OsGRAS-53%2C OsGRAS53%2C GRAS-53;Oryzabase Gene Name Synonym(s)=GRAS protein 53;Note=Similar to GRAS family transcription factor containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QXZ6 (UniProt);InterPro=Transcription factor GRAS (IPR005202);Oryzabase=22804;TENOR=Os12t0138100-00;KEGG=Os12t0138100-00
Chr12	irgsp1_rep	CDS	1853601	1855079	.	-	0	Parent=Os12t0138100-00
Chr12	irgsp1_rep	mRNA	1856119	1857180	.	-	.	ID=Os12t0138166-00;Name=Os12t0138166-00;Locus_id=Os12g0138166;CGSNL Gene Symbol=GRAS53;CGSNL Gene Name=GRAS PROTEIN 53;Oryzabase Gene Symbol Synonym(s)=OsGRAS-53%2C OsGRAS53%2C GRAS-53;Oryzabase Gene Name Synonym(s)=GRAS protein 53;Note=Similar to GRAS family transcription factor containing protein.;Transcript_evidence=AK375919 (DDBJ);ORF_evidence=Q2QXZ6 (UniProt);InterPro=Transcription factor GRAS (IPR005202);Oryzabase=22804;TENOR=Os12t0138166-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	1856119	1857180	.	-	0	Parent=Os12t0138166-00
Chr12	irgsp1_rep	mRNA	1859797	1861329	.	-	.	ID=Os12t0138200-00;Name=Os12t0138200-00;Locus_id=Os12g0138200;CGSNL Gene Symbol=GRAS54;CGSNL Gene Name=GRAS PROTEIN 54;Oryzabase Gene Symbol Synonym(s)=OsGRAS-54%2C OsGRAS54%2C GRAS-54;Oryzabase Gene Name Synonym(s)=GRAS protein 54;Note=Similar to GRAS family transcription factor containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QXZ5 (UniProt);InterPro=Transcription factor GRAS (IPR005202);Oryzabase=22805;TENOR=Os12t0138200-00
Chr12	irgsp1_rep	CDS	1859797	1861329	.	-	0	Parent=Os12t0138200-00
Chr12	irgsp1_rep	mRNA	1870710	1872237	.	+	.	ID=Os12t0138500-01;Name=Os12t0138500-01;Locus_id=Os12g0138500;Oryzabase Gene Symbol Synonym(s)=NH5%2C OsNH5;Oryzabase Gene Name Synonym(s)=NPR1 homologue 5;Note=Similar to Ankyrin-repeat protein.;Transcript_evidence=AK060933 (DDBJ%2C Best hit);ORF_evidence=A2CIR7 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683),Domain of unknown function DUF3420 (IPR024228);NIAS_FLcDNA=006-201-B05;Oryzabase=23599;TENOR=Os12t0138500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	1870710	1870867	.	+	.	Parent=Os12t0138500-01
Chr12	irgsp1_rep	CDS	1870868	1870891	.	+	0	Parent=Os12t0138500-01
Chr12	irgsp1_rep	CDS	1871149	1872102	.	+	0	Parent=Os12t0138500-01
Chr12	irgsp1_rep	three_prime_UTR	1872103	1872237	.	+	.	Parent=Os12t0138500-01
Chr12	irgsp1_rep	mRNA	1869478	1872102	.	+	.	ID=Os12t0138500-02;Name=Os12t0138500-02;Locus_id=Os12g0138500;RAP-DB Gene Symbol Synonym(s)=OsBOP3%2C NH5;RAP-DB Gene Name Synonym(s)=BLADE-ON-PETIOLE3;Oryzabase Gene Symbol Synonym(s)=NH5%2C OsNH5;Oryzabase Gene Name Synonym(s)=NPR1 homologue 5;Note=BTB/POX VIRUS AND ZINC FINGER (POZ) domain and ankyrin repeats containing protein%2C Regulator of proximal-distal patterning of leaves;Transcript_evidence=Inferred from literature;ORF_evidence=Q2QXZ2;GO=Molecular Function: protein binding (GO:0005515);InterPro=SKP1/BTB/POZ domain superfamily (IPR011333),Ankyrin repeat-containing domain superfamily (IPR036770),BTB/POZ domain (IPR000210),Regulatory protein NPR%2C central domain (IPR024228),Ankyrin repeat-containing domain (IPR020683),Ankyrin repeat (IPR002110);Manual Curation=February 12%2C 2019;Literature_PMID=24919709,30728357;Oryzabase=23599
Chr12	irgsp1_rep	five_prime_UTR	1869478	1869651	.	+	.	Parent=Os12t0138500-02
Chr12	irgsp1_rep	CDS	1869652	1870182	.	+	0	Parent=Os12t0138500-02
Chr12	irgsp1_rep	CDS	1871149	1872102	.	+	0	Parent=Os12t0138500-02
Chr12	irgsp1_rep	mRNA	1871013	1872175	.	-	.	ID=Os12t0138600-01;Name=Os12t0138600-01;Locus_id=Os12g0138600;Note=Hypothetical protein.;Transcript_evidence=AK107475 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-129-B08;Expression=AK107475;TENOR=Os12t0138600-01;KEGG=Os12t0138600-01
Chr12	irgsp1_rep	five_prime_UTR	1872078	1872175	.	-	.	Parent=Os12t0138600-01
Chr12	irgsp1_rep	CDS	1871547	1872077	.	-	0	Parent=Os12t0138600-01
Chr12	irgsp1_rep	three_prime_UTR	1871013	1871546	.	-	.	Parent=Os12t0138600-01
Chr12	irgsp1_rep	mRNA	1881743	1882352	.	+	.	ID=Os12t0138700-00;Name=Os12t0138700-00;Locus_id=Os12g0138700;Note=Similar to Dcp1-like decapping family protein.;Transcript_evidence=EU950594 (DDBJ);ORF_evidence=B4FT08 (UniProt);TENOR=Os12t0138700-00;KEGG=Os12t0138700-00
Chr12	irgsp1_rep	CDS	1881743	1882333	.	+	0	Parent=Os12t0138700-00
Chr12	irgsp1_rep	three_prime_UTR	1882334	1882352	.	+	.	Parent=Os12t0138700-00
Chr12	irgsp1_rep	mRNA	1882578	1888258	.	+	.	ID=Os12t0138800-01;Name=Os12t0138800-01;Locus_id=Os12g0138800;Oryzabase Gene Symbol Synonym(s)=OsSTRL21%2C STRL21;Oryzabase Gene Name Synonym(s)=STR-like 21;Note=Six-bladed beta-propeller%2C TolB-like domain containing protein.;Transcript_evidence=AK064775 (DDBJ%2C Best hit);ORF_evidence=Q2QXZ0 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: strictosidine synthase activity (GO:0016844);InterPro=Six-bladed beta-propeller%2C TolB-like (IPR011042),Strictosidine synthase%2C conserved region (IPR018119);NIAS_FLcDNA=J013000A24;Oryzabase=21801;TENOR=Os12t0138800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	1882578	1882835	.	+	.	Parent=Os12t0138800-01
Chr12	irgsp1_rep	five_prime_UTR	1882937	1884516	.	+	.	Parent=Os12t0138800-01
Chr12	irgsp1_rep	CDS	1884517	1884965	.	+	0	Parent=Os12t0138800-01
Chr12	irgsp1_rep	CDS	1887077	1887343	.	+	1	Parent=Os12t0138800-01
Chr12	irgsp1_rep	CDS	1887455	1888031	.	+	1	Parent=Os12t0138800-01
Chr12	irgsp1_rep	three_prime_UTR	1888032	1888258	.	+	.	Parent=Os12t0138800-01
Chr12	irgsp1_rep	mRNA	1888943	1894830	.	+	.	ID=Os12t0138900-01;Name=Os12t0138900-01;Locus_id=Os12g0138900;RAP-DB Gene Symbol Synonym(s)=OsIPMS2;RAP-DB Gene Name Synonym(s)=Isopropylmalate synthase 2;CGSNL Gene Symbol=IPMS2;CGSNL Gene Name=ISOPROPYLMALATE SYNTHASE 2;Oryzabase Gene Symbol Synonym(s)=OsIPMS2;Oryzabase Gene Name Synonym(s)=isopropylmalate synthase 2;Note=Isopropylmalate synthase%2C Regulation of seed vigour;Transcript_evidence=AK066890;ORF_evidence=Q2QXY9;GO=Biological Process: leucine biosynthetic process (GO:0009098),Biological Process: carboxylic acid metabolic process (GO:0019752),Molecular Function: catalytic activity (GO:0003824),Molecular Function: 2-isopropylmalate synthase activity (GO:0003852),Molecular Function: transferase activity%2C transferring acyl groups%2C acyl groups converted into alkyl on transfer (GO:0046912);InterPro=Aldolase-type TIM barrel (IPR013785),2-isopropylmalate synthase LeuA%2C allosteric (dimerisation) domain  superfamily (IPR036230),2-isopropylmalate synthase%2C bacterial-type (IPR005671),Pyruvate carboxyltransferase (IPR000891),2-isopropylmalate synthase LeuA%2C allosteric (dimerisation) domain (IPR013709),Alpha-isopropylmalate/homocitrate synthase%2C conserved site (IPR002034);NIAS_FLcDNA=J013088L20;Manual Curation=July 24%2C 2018;Literature_PMID=29947463;Oryzabase=22457;Expression=AK066890;TENOR=Os12t0138900-01;KEGG=Os12t0138900-01 (EC:2.3.3.13)
Chr12	irgsp1_rep	five_prime_UTR	1888943	1889146	.	+	.	Parent=Os12t0138900-01
Chr12	irgsp1_rep	CDS	1889147	1889868	.	+	0	Parent=Os12t0138900-01
Chr12	irgsp1_rep	CDS	1891201	1891414	.	+	1	Parent=Os12t0138900-01
Chr12	irgsp1_rep	CDS	1891489	1891569	.	+	0	Parent=Os12t0138900-01
Chr12	irgsp1_rep	CDS	1891707	1891796	.	+	0	Parent=Os12t0138900-01
Chr12	irgsp1_rep	CDS	1891904	1891990	.	+	0	Parent=Os12t0138900-01
Chr12	irgsp1_rep	CDS	1892507	1892607	.	+	0	Parent=Os12t0138900-01
Chr12	irgsp1_rep	CDS	1893195	1893228	.	+	1	Parent=Os12t0138900-01
Chr12	irgsp1_rep	CDS	1893320	1893394	.	+	0	Parent=Os12t0138900-01
Chr12	irgsp1_rep	CDS	1893511	1893594	.	+	0	Parent=Os12t0138900-01
Chr12	irgsp1_rep	CDS	1893675	1893809	.	+	0	Parent=Os12t0138900-01
Chr12	irgsp1_rep	CDS	1894170	1894312	.	+	0	Parent=Os12t0138900-01
Chr12	irgsp1_rep	CDS	1894442	1894583	.	+	1	Parent=Os12t0138900-01
Chr12	irgsp1_rep	three_prime_UTR	1894584	1894830	.	+	.	Parent=Os12t0138900-01
Chr12	irgsp1_rep	mRNA	1889124	1894864	.	+	.	ID=Os12t0138900-02;Name=Os12t0138900-02;Locus_id=Os12g0138900;CGSNL Gene Symbol=IPMS2;CGSNL Gene Name=ISOPROPYLMALATE SYNTHASE 2;Oryzabase Gene Symbol Synonym(s)=OsIPMS2;Oryzabase Gene Name Synonym(s)=isopropylmalate synthase 2;Note=Similar to Plastid isopropylmalate synthase (Fragment).;Transcript_evidence=AK243491 (DDBJ%2C Best hit);ORF_evidence=B6SWM0 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: leucine biosynthetic process (GO:0009098),Biological Process: carboxylic acid metabolic process (GO:0019752),Molecular Function: catalytic activity (GO:0003824),Molecular Function: 2-isopropylmalate synthase activity (GO:0003852),Molecular Function: transferase activity%2C transferring acyl groups%2C acyl groups converted into alkyl on transfer (GO:0046912);InterPro=Pyruvate carboxyltransferase (IPR000891),Alpha-isopropylmalate/homocitrate synthase%2C conserved site (IPR002034),2-isopropylmalate synthase%2C bacterial-type (IPR005671),2-isopropylmalate synthase LeuA%2C allosteric (dimerisation) domain (IPR013709),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J100073O14;Oryzabase=22457;TENOR=Os12t0138900-02;KEGG=Os12t0138900-02 (EC:2.3.3.13)
Chr12	irgsp1_rep	five_prime_UTR	1889124	1889146	.	+	.	Parent=Os12t0138900-02
Chr12	irgsp1_rep	CDS	1889147	1889868	.	+	0	Parent=Os12t0138900-02
Chr12	irgsp1_rep	CDS	1891201	1891414	.	+	1	Parent=Os12t0138900-02
Chr12	irgsp1_rep	CDS	1891489	1891569	.	+	0	Parent=Os12t0138900-02
Chr12	irgsp1_rep	CDS	1891707	1891796	.	+	0	Parent=Os12t0138900-02
Chr12	irgsp1_rep	CDS	1891904	1891990	.	+	0	Parent=Os12t0138900-02
Chr12	irgsp1_rep	CDS	1892507	1892607	.	+	0	Parent=Os12t0138900-02
Chr12	irgsp1_rep	CDS	1893195	1893228	.	+	1	Parent=Os12t0138900-02
Chr12	irgsp1_rep	CDS	1893320	1893394	.	+	0	Parent=Os12t0138900-02
Chr12	irgsp1_rep	CDS	1893511	1893594	.	+	0	Parent=Os12t0138900-02
Chr12	irgsp1_rep	CDS	1893675	1893809	.	+	0	Parent=Os12t0138900-02
Chr12	irgsp1_rep	CDS	1894170	1894312	.	+	0	Parent=Os12t0138900-02
Chr12	irgsp1_rep	CDS	1894442	1894583	.	+	1	Parent=Os12t0138900-02
Chr12	irgsp1_rep	three_prime_UTR	1894584	1894864	.	+	.	Parent=Os12t0138900-02
Chr12	irgsp1_rep	mRNA	1899904	1900590	.	+	.	ID=Os12t0139100-00;Name=Os12t0139100-00;Locus_id=Os12g0139100;Note=Similar to Zinc finger%2C C3HC4 type family protein.;Transcript_evidence=AK358384 (DDBJ);ORF_evidence=Q2QXY7 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);TENOR=Os12t0139100-00
Chr12	irgsp1_rep	CDS	1899904	1900590	.	+	0	Parent=Os12t0139100-00
Chr12	irgsp1_rep	mRNA	1906051	1909152	.	-	.	ID=Os12t0139300-01;Name=Os12t0139300-01;Locus_id=Os12g0139300;CGSNL Gene Symbol=CPD2;CGSNL Gene Name=CPD2;Oryzabase Gene Symbol Synonym(s)=OsCPD2%2C CYP90A4%2C CYP90A4/OsCPD2;Oryzabase Gene Name Synonym(s)=CONSTITUTIVE PHOTOMORPHOGENESIS and DWARFISM 2%2C CytoChrome P450 90A4;Note=Similar to CytoChrome P450 90A1 (EC 1.14.-.-).;Transcript_evidence=AK060257 (DDBJ%2C Best hit);ORF_evidence=Q5CCK2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=001-004-E10;Oryzabase=18161;Expression=AK060257;TENOR=Os12t0139300-01;KEGG=Os12t0139300-01
Chr12	irgsp1_rep	five_prime_UTR	1909069	1909152	.	-	.	Parent=Os12t0139300-01
Chr12	irgsp1_rep	CDS	1908355	1909068	.	-	0	Parent=Os12t0139300-01
Chr12	irgsp1_rep	CDS	1907941	1908219	.	-	0	Parent=Os12t0139300-01
Chr12	irgsp1_rep	CDS	1907210	1907296	.	-	0	Parent=Os12t0139300-01
Chr12	irgsp1_rep	CDS	1906966	1907044	.	-	0	Parent=Os12t0139300-01
Chr12	irgsp1_rep	CDS	1906741	1906847	.	-	2	Parent=Os12t0139300-01
Chr12	irgsp1_rep	CDS	1906490	1906626	.	-	0	Parent=Os12t0139300-01
Chr12	irgsp1_rep	CDS	1906245	1906347	.	-	1	Parent=Os12t0139300-01
Chr12	irgsp1_rep	three_prime_UTR	1906051	1906244	.	-	.	Parent=Os12t0139300-01
Chr12	irgsp1_rep	mRNA	1906265	1907299	.	+	.	ID=Os12t0139350-00;Name=Os12t0139350-00;Locus_id=Os12g0139350;Note=Non-protein coding transcript.;Transcript_evidence=BT064114 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0139350-00
Chr12	irgsp1_rep	exon	1906265	1906335	.	+	.	Parent=Os12t0139350-00
Chr12	irgsp1_rep	exon	1906481	1906613	.	+	.	Parent=Os12t0139350-00
Chr12	irgsp1_rep	exon	1906715	1907299	.	+	.	Parent=Os12t0139350-00
Chr12	irgsp1_rep	mRNA	1915773	1917702	.	+	.	ID=Os12t0139400-01;Name=Os12t0139400-01;Locus_id=Os12g0139400;RAP-DB Gene Symbol Synonym(s)=RR10%2C OsRR10%2C Rra2%2C OsRRA2;RAP-DB Gene Name Synonym(s)=A-TYPE RESPONSE REGULATOR 10%2C A-TYPE response regulator 10%2C A-type RR 2;CGSNL Gene Symbol=RR10;CGSNL Gene Name=A-TYPE RESPONSE REGULATOR 10;Oryzabase Gene Symbol Synonym(s)=OsRR10%2C Rra2%2C OsRRA2%2C RR2;Oryzabase Gene Name Synonym(s)=A-TYPE response regulator 10%2C A-type RR 2;Note=A-type response regulator%2C Cytokinin signaling;Transcript_evidence=AB249660 (Genbank),BR000257 (Genbank);ORF_evidence=Q2QXY3 (UniProt);GO=Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: two-component response regulator activity (GO:0000156);InterPro=Signal transduction response regulator%2C receiver domain (IPR001789),CheY-like superfamily (IPR011006);Manual Curation=May 10%2C 2010;Literature_PMID=16919402,16472405,17293362;Oryzabase=8155;TENOR=Os12t0139400-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	1915773	1915992	.	+	.	Parent=Os12t0139400-01
Chr12	irgsp1_rep	CDS	1915993	1916095	.	+	0	Parent=Os12t0139400-01
Chr12	irgsp1_rep	CDS	1916195	1916286	.	+	2	Parent=Os12t0139400-01
Chr12	irgsp1_rep	CDS	1916384	1916461	.	+	0	Parent=Os12t0139400-01
Chr12	irgsp1_rep	CDS	1916577	1916647	.	+	0	Parent=Os12t0139400-01
Chr12	irgsp1_rep	CDS	1917337	1917598	.	+	1	Parent=Os12t0139400-01
Chr12	irgsp1_rep	three_prime_UTR	1917599	1917702	.	+	.	Parent=Os12t0139400-01
Chr12	irgsp1_rep	mRNA	1917885	1920583	.	-	.	ID=Os12t0139500-01;Name=Os12t0139500-01;Locus_id=Os12g0139500;Note=DNA-directed RNA polymerase%2C RPB5 subunit domain containing protein.;Transcript_evidence=AK063339 (DDBJ%2C Best hit);ORF_evidence=Q2QXY2 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899);InterPro=RNA polymerase%2C subunit H/Rpb5 C-terminal (IPR000783),RNA polymerase%2C Rpb5%2C N-terminal (IPR005571),DNA-directed RNA polymerase%2C RPB5 subunit (IPR014381);NIAS_FLcDNA=001-114-A10;Expression=AK063339;TENOR=Os12t0139500-01;KEGG=Os12t0139500-01
Chr12	irgsp1_rep	five_prime_UTR	1920296	1920583	.	-	.	Parent=Os12t0139500-01
Chr12	irgsp1_rep	CDS	1920029	1920295	.	-	0	Parent=Os12t0139500-01
Chr12	irgsp1_rep	CDS	1919109	1919285	.	-	0	Parent=Os12t0139500-01
Chr12	irgsp1_rep	CDS	1918763	1918876	.	-	0	Parent=Os12t0139500-01
Chr12	irgsp1_rep	CDS	1918103	1918228	.	-	0	Parent=Os12t0139500-01
Chr12	irgsp1_rep	three_prime_UTR	1917885	1918102	.	-	.	Parent=Os12t0139500-01
Chr12	irgsp1_rep	mRNA	1922267	1926698	.	-	.	ID=Os12t0139600-01;Name=Os12t0139600-01;Locus_id=Os12g0139600;Oryzabase Gene Name Synonym(s)="L-Galactono%2C 4-lactone dehydrogenase";Note=L-Galactono-1%2C4-lactone dehydrogenase.;Transcript_evidence=AK241565 (DDBJ%2C Best hit);ORF_evidence=Q2QXY1 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: membrane (GO:0016020),Molecular Function: catalytic activity (GO:0003824),Molecular Function: D-arabinono-1%2C4-lactone oxidase activity (GO:0003885),Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on CH-OH group of donors (GO:0016614),Molecular Function: galactonolactone dehydrogenase activity (GO:0016633),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C oxygen as acceptor (GO:0016899),Molecular Function: flavin adenine dinucleotide binding (GO:0050660);InterPro=FAD linked oxidase%2C N-terminal (IPR006094),D-arabinono-1%2C4-lactone oxidase (IPR007173),Galactonolactone dehydrogenase (IPR010029),FAD-binding%2C type 2 (IPR016166),FAD-linked oxidase%2C FAD-binding%2C subdomain 2 (IPR016168),L-gulonolactone/D-arabinono-1%2C4-lactone oxidase (IPR023595);NIAS_FLcDNA=J065179A11;Oryzabase=20163;TENOR=Os12t0139600-01;KEGG=Os12t0139600-01
Chr12	irgsp1_rep	five_prime_UTR	1926629	1926698	.	-	.	Parent=Os12t0139600-01
Chr12	irgsp1_rep	CDS	1926023	1926628	.	-	0	Parent=Os12t0139600-01
Chr12	irgsp1_rep	CDS	1924760	1925010	.	-	0	Parent=Os12t0139600-01
Chr12	irgsp1_rep	CDS	1924464	1924646	.	-	1	Parent=Os12t0139600-01
Chr12	irgsp1_rep	CDS	1923896	1924298	.	-	1	Parent=Os12t0139600-01
Chr12	irgsp1_rep	CDS	1922977	1923117	.	-	0	Parent=Os12t0139600-01
Chr12	irgsp1_rep	CDS	1922579	1922746	.	-	0	Parent=Os12t0139600-01
Chr12	irgsp1_rep	three_prime_UTR	1922267	1922578	.	-	.	Parent=Os12t0139600-01
Chr12	irgsp1_rep	mRNA	1926855	1928071	.	+	.	ID=Os12t0139700-00;Name=Os12t0139700-00;Locus_id=Os12g0139700;Note=Hypothetical conserved gene.;Transcript_evidence=BT035487 (DDBJ);ORF_evidence=A2ZHY1 (UniProt);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);TENOR=Os12t0139700-00;KEGG=Os12t0139700-00
Chr12	irgsp1_rep	five_prime_UTR	1926855	1926877	.	+	.	Parent=Os12t0139700-00
Chr12	irgsp1_rep	CDS	1926878	1927507	.	+	0	Parent=Os12t0139700-00
Chr12	irgsp1_rep	three_prime_UTR	1927508	1928071	.	+	.	Parent=Os12t0139700-00
Chr12	irgsp1_rep	mRNA	1929900	1931399	.	-	.	ID=Os12t0139800-00;Name=Os12t0139800-00;Locus_id=Os12g0139800;Note=Hypothetical conserved gene.;Transcript_evidence=EU968899 (DDBJ);ORF_evidence=A2ZHY2 (UniProt);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);TENOR=Os12t0139800-00;KEGG=Os12t0139800-00
Chr12	irgsp1_rep	five_prime_UTR	1931230	1931399	.	-	.	Parent=Os12t0139800-00
Chr12	irgsp1_rep	CDS	1929976	1931229	.	-	0	Parent=Os12t0139800-00
Chr12	irgsp1_rep	three_prime_UTR	1929900	1929975	.	-	.	Parent=Os12t0139800-00
Chr12	irgsp1_rep	mRNA	1934499	1934870	.	+	.	ID=Os12t0140000-00;Name=Os12t0140000-00;Locus_id=Os12g0140000;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001176783.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);TENOR=Os12t0140000-00;KEGG=Os12t0140000-00
Chr12	irgsp1_rep	CDS	1934499	1934870	.	+	0	Parent=Os12t0140000-00
Chr12	irgsp1_rep	mRNA	1933377	1937604	.	+	.	ID=Os12t0140050-00;Name=Os12t0140050-00;Locus_id=Os12g0140050;Note=Similar to EF hand family protein.;Transcript_evidence=DQ245393 (DDBJ);ORF_evidence=Q2RAN7 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);TENOR=Os12t0140050-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	1933377	1933787	.	+	0	Parent=Os12t0140050-00
Chr12	irgsp1_rep	CDS	1937375	1937419	.	+	0	Parent=Os12t0140050-00
Chr12	irgsp1_rep	three_prime_UTR	1937420	1937604	.	+	.	Parent=Os12t0140050-00
Chr12	irgsp1_rep	mRNA	1940077	1940676	.	-	.	ID=Os12t0140200-00;Name=Os12t0140200-00;Locus_id=Os12g0140200;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001176784.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os12t0140200-00;KEGG=Os12t0140200-00
Chr12	irgsp1_rep	CDS	1940077	1940676	.	-	0	Parent=Os12t0140200-00
Chr12	irgsp1_rep	mRNA	1942469	1947586	.	-	.	ID=Os12t0140266-00;Name=Os12t0140266-00;Locus_id=Os12g0140266;Oryzabase Gene Name Synonym(s)=Transcription initiation factor IIE subunit alpha isoform X1;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9G815 (UniProt);GO=Biological Process: transcription initiation from RNA polymerase II promoter (GO:0006367),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Transcription factor TFIIE%2C alpha subunit (IPR002853),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Transcription factor TFE/TFIIEalpha HTH domain (IPR017919);Oryzabase=22573;TENOR=Os12t0140266-00
Chr12	irgsp1_rep	CDS	1947564	1947586	.	-	0	Parent=Os12t0140266-00
Chr12	irgsp1_rep	CDS	1946603	1946720	.	-	1	Parent=Os12t0140266-00
Chr12	irgsp1_rep	CDS	1945854	1945973	.	-	0	Parent=Os12t0140266-00
Chr12	irgsp1_rep	CDS	1945466	1945575	.	-	0	Parent=Os12t0140266-00
Chr12	irgsp1_rep	CDS	1945238	1945397	.	-	1	Parent=Os12t0140266-00
Chr12	irgsp1_rep	CDS	1944379	1944522	.	-	0	Parent=Os12t0140266-00
Chr12	irgsp1_rep	CDS	1943109	1943276	.	-	0	Parent=Os12t0140266-00
Chr12	irgsp1_rep	CDS	1942822	1943011	.	-	0	Parent=Os12t0140266-00
Chr12	irgsp1_rep	CDS	1942469	1942488	.	-	2	Parent=Os12t0140266-00
Chr12	irgsp1_rep	mRNA	1949577	1952621	.	-	.	ID=Os12t0140300-01;Name=Os12t0140300-01;Locus_id=Os12g0140300;Note=FBD domain containing protein.;Transcript_evidence=AK102092 (DDBJ%2C Best hit);ORF_evidence=B9G816 (UniProt);NIAS_FLcDNA=J033083A02;Expression=AK102092;TENOR=Os12t0140300-01;KEGG=Os12t0140300-01
Chr12	irgsp1_rep	five_prime_UTR	1952517	1952621	.	-	.	Parent=Os12t0140300-01
Chr12	irgsp1_rep	CDS	1951029	1952516	.	-	0	Parent=Os12t0140300-01
Chr12	irgsp1_rep	CDS	1950805	1950930	.	-	0	Parent=Os12t0140300-01
Chr12	irgsp1_rep	CDS	1950435	1950740	.	-	0	Parent=Os12t0140300-01
Chr12	irgsp1_rep	three_prime_UTR	1950426	1950434	.	-	.	Parent=Os12t0140300-01
Chr12	irgsp1_rep	three_prime_UTR	1949577	1949976	.	-	.	Parent=Os12t0140300-01
Chr12	irgsp1_rep	mRNA	1966765	1967415	.	-	.	ID=Os12t0140550-00;Name=Os12t0140550-00;Locus_id=Os12g0140550;Note=Hypothetical gene.;Transcript_evidence=EU945989 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0140550-00;KEGG=Os12t0140550-00
Chr12	irgsp1_rep	five_prime_UTR	1967191	1967415	.	-	.	Parent=Os12t0140550-00
Chr12	irgsp1_rep	CDS	1966921	1967190	.	-	0	Parent=Os12t0140550-00
Chr12	irgsp1_rep	three_prime_UTR	1966765	1966920	.	-	.	Parent=Os12t0140550-00
Chr12	irgsp1_rep	mRNA	1969715	1970798	.	+	.	ID=Os12t0140600-01;Name=Os12t0140600-01;Locus_id=Os12g0140600;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK111120 (DDBJ%2C Best hit);ORF_evidence=XP_002448964.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=002-176-C01;Expression=AK111120;TENOR=Os12t0140600-01;KEGG=Os12t0140600-01
Chr12	irgsp1_rep	five_prime_UTR	1969715	1969984	.	+	.	Parent=Os12t0140600-01
Chr12	irgsp1_rep	five_prime_UTR	1970104	1970152	.	+	.	Parent=Os12t0140600-01
Chr12	irgsp1_rep	CDS	1970153	1970668	.	+	0	Parent=Os12t0140600-01
Chr12	irgsp1_rep	three_prime_UTR	1970669	1970798	.	+	.	Parent=Os12t0140600-01
Chr12	irgsp1_rep	mRNA	1969719	1971362	.	+	.	ID=Os12t0140600-02;Name=Os12t0140600-02;Locus_id=Os12g0140600;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK101391 (DDBJ%2C Best hit);ORF_evidence=XP_002448964.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J033036L15;Expression=AK101391;TENOR=Os12t0140600-02;KEGG=Os12t0140600-02
Chr12	irgsp1_rep	five_prime_UTR	1969719	1970152	.	+	.	Parent=Os12t0140600-02
Chr12	irgsp1_rep	CDS	1970153	1970668	.	+	0	Parent=Os12t0140600-02
Chr12	irgsp1_rep	three_prime_UTR	1970669	1971362	.	+	.	Parent=Os12t0140600-02
Chr12	irgsp1_rep	mRNA	1973806	1974672	.	-	.	ID=Os12t0140700-01;Name=Os12t0140700-01;Locus_id=Os12g0140700;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK108475 (DDBJ%2C Best hit);ORF_evidence=B8BM01 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=002-143-E10;Expression=AK108475;TENOR=Os12t0140700-01;KEGG=Os12t0140700-01
Chr12	irgsp1_rep	five_prime_UTR	1974540	1974672	.	-	.	Parent=Os12t0140700-01
Chr12	irgsp1_rep	CDS	1973946	1974539	.	-	0	Parent=Os12t0140700-01
Chr12	irgsp1_rep	three_prime_UTR	1973806	1973945	.	-	.	Parent=Os12t0140700-01
Chr12	irgsp1_rep	mRNA	1986251	1989200	.	+	.	ID=Os12t0141000-01;Name=Os12t0141000-01;Locus_id=Os12g0141000;Note=Conserved hypothetical protein.;Transcript_evidence=AK240932 (DDBJ%2C Best hit);ORF_evidence=B9GBU2 (UniProt);NIAS_FLcDNA=J065041B13;TENOR=Os12t0141000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	1986251	1986301	.	+	.	Parent=Os12t0141000-01
Chr12	irgsp1_rep	CDS	1986302	1986997	.	+	0	Parent=Os12t0141000-01
Chr12	irgsp1_rep	three_prime_UTR	1986998	1989200	.	+	.	Parent=Os12t0141000-01
Chr12	irgsp1_rep	mRNA	1987392	1988307	.	-	.	ID=Os12t0141050-00;Name=Os12t0141050-00;Locus_id=Os12g0141050;Note=Hypothetical protein.;Transcript_evidence=FP101342 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0141050-00
Chr12	irgsp1_rep	five_prime_UTR	1987916	1988307	.	-	.	Parent=Os12t0141050-00
Chr12	irgsp1_rep	CDS	1987906	1987915	.	-	0	Parent=Os12t0141050-00
Chr12	irgsp1_rep	CDS	1987392	1987815	.	-	2	Parent=Os12t0141050-00
Chr12	irgsp1_rep	mRNA	1989647	1994269	.	-	.	ID=Os12t0141100-01;Name=Os12t0141100-01;Locus_id=Os12g0141100;Note=Phosphatidylinositol-4-phosphate 5-kinase family protein.;Transcript_evidence=AK102875 (DDBJ%2C Best hit);ORF_evidence=NP_187453.1 (RefSeq);GO=Biological Process: phosphatidylinositol metabolic process (GO:0046488),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphatidylinositol phosphate kinase activity (GO:0016307),Molecular Function: 1-phosphatidylinositol-4-phosphate 5-kinase activity (GO:0016308);InterPro=Phosphatidylinositol-4-phosphate 5-kinase%2C core (IPR002498),MORN motif (IPR003409),Phosphatidylinositol-4-phosphate 5-kinase%2C core%2C subgroup (IPR016034),Phosphatidylinositol-4-phosphate 5-kinase%2C plant (IPR017163),Phosphatidylinositol-4-phosphate 5-kinase (IPR023610);NIAS_FLcDNA=J033112C21;Expression=AK102875;TENOR=Os12t0141100-01;KEGG=Os12t0141100-01 (EC:2.7.1.68)
Chr12	irgsp1_rep	five_prime_UTR	1994007	1994269	.	-	.	Parent=Os12t0141100-01
Chr12	irgsp1_rep	CDS	1992688	1994006	.	-	0	Parent=Os12t0141100-01
Chr12	irgsp1_rep	CDS	1992277	1992444	.	-	1	Parent=Os12t0141100-01
Chr12	irgsp1_rep	CDS	1991755	1991920	.	-	1	Parent=Os12t0141100-01
Chr12	irgsp1_rep	CDS	1991555	1991671	.	-	0	Parent=Os12t0141100-01
Chr12	irgsp1_rep	CDS	1991269	1991462	.	-	0	Parent=Os12t0141100-01
Chr12	irgsp1_rep	CDS	1990836	1990931	.	-	1	Parent=Os12t0141100-01
Chr12	irgsp1_rep	CDS	1990684	1990737	.	-	1	Parent=Os12t0141100-01
Chr12	irgsp1_rep	CDS	1990012	1990303	.	-	1	Parent=Os12t0141100-01
Chr12	irgsp1_rep	three_prime_UTR	1989647	1990011	.	-	.	Parent=Os12t0141100-01
Chr12	irgsp1_rep	mRNA	1990691	1994111	.	-	.	ID=Os12t0141100-02;Name=Os12t0141100-02;Locus_id=Os12g0141100;Note=Similar to phosphatidylinositol-4-phosphate 5-kinase family protein.;Transcript_evidence=AK100364 (DDBJ%2C Best hit);ORF_evidence=NP_187453.1 (RefSeq);GO=Biological Process: phosphatidylinositol metabolic process (GO:0046488),Molecular Function: phosphatidylinositol phosphate kinase activity (GO:0016307);InterPro=Phosphatidylinositol-4-phosphate 5-kinase%2C core (IPR002498),MORN motif (IPR003409),Phosphatidylinositol-4-phosphate 5-kinase%2C core%2C subgroup (IPR016034),Phosphatidylinositol-4-phosphate 5-kinase (IPR023610);NIAS_FLcDNA=J023083N15;TENOR=Os12t0141100-02
Chr12	irgsp1_rep	five_prime_UTR	1994007	1994111	.	-	.	Parent=Os12t0141100-02
Chr12	irgsp1_rep	CDS	1992688	1994006	.	-	0	Parent=Os12t0141100-02
Chr12	irgsp1_rep	CDS	1992277	1992444	.	-	1	Parent=Os12t0141100-02
Chr12	irgsp1_rep	CDS	1991755	1991920	.	-	1	Parent=Os12t0141100-02
Chr12	irgsp1_rep	CDS	1991555	1991671	.	-	0	Parent=Os12t0141100-02
Chr12	irgsp1_rep	CDS	1991269	1991462	.	-	0	Parent=Os12t0141100-02
Chr12	irgsp1_rep	CDS	1990836	1990931	.	-	1	Parent=Os12t0141100-02
Chr12	irgsp1_rep	CDS	1990691	1990737	.	-	1	Parent=Os12t0141100-02
Chr12	irgsp1_rep	mRNA	2010246	2011771	.	-	.	ID=Os12t0141400-01;Name=Os12t0141400-01;Locus_id=Os12g0141400;Note=Conserved hypothetical protein.;Transcript_evidence=AK071576 (DDBJ%2C Best hit);ORF_evidence=B9GBU4 (UniProt);NIAS_FLcDNA=J023105A17;TENOR=Os12t0141400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	2011699	2011771	.	-	.	Parent=Os12t0141400-01
Chr12	irgsp1_rep	CDS	2011662	2011698	.	-	0	Parent=Os12t0141400-01
Chr12	irgsp1_rep	CDS	2011033	2011262	.	-	2	Parent=Os12t0141400-01
Chr12	irgsp1_rep	three_prime_UTR	2010246	2011032	.	-	.	Parent=Os12t0141400-01
Chr12	irgsp1_rep	mRNA	2012898	2016330	.	-	.	ID=Os12t0141500-01;Name=Os12t0141500-01;Locus_id=Os12g0141500;Oryzabase Gene Symbol Synonym(s)=OsDegp13%2C DEGP13%2C OsDeg-like 3;Oryzabase Gene Name Synonym(s)=Deg protease 13%2C DEG PROTEASE 13;Note=Peptidase%2C trypsin-like serine and cysteine domain containing protein.;Transcript_evidence=AK059752 (DDBJ%2C Best hit);ORF_evidence=Q2QXV8 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Peptidase cysteine/serine%2C trypsin-like (IPR009003);NIAS_FLcDNA=006-203-B06;Oryzabase=20089;Expression=AK059752;TENOR=Os12t0141500-01;KEGG=Os12t0141500-01
Chr12	irgsp1_rep	five_prime_UTR	2015954	2016330	.	-	.	Parent=Os12t0141500-01
Chr12	irgsp1_rep	five_prime_UTR	2013944	2014095	.	-	.	Parent=Os12t0141500-01
Chr12	irgsp1_rep	CDS	2013932	2013943	.	-	0	Parent=Os12t0141500-01
Chr12	irgsp1_rep	CDS	2013679	2013851	.	-	0	Parent=Os12t0141500-01
Chr12	irgsp1_rep	CDS	2013316	2013520	.	-	1	Parent=Os12t0141500-01
Chr12	irgsp1_rep	CDS	2013159	2013233	.	-	0	Parent=Os12t0141500-01
Chr12	irgsp1_rep	three_prime_UTR	2012898	2013158	.	-	.	Parent=Os12t0141500-01
Chr12	irgsp1_rep	mRNA	2012920	2016330	.	-	.	ID=Os12t0141500-02;Name=Os12t0141500-02;Locus_id=Os12g0141500;Oryzabase Gene Symbol Synonym(s)=OsDegp13%2C DEGP13%2C OsDeg-like 3;Oryzabase Gene Name Synonym(s)=Deg protease 13%2C DEG PROTEASE 13;Note=Hypothetical conserved gene.;Transcript_evidence=AK058539 (DDBJ%2C Best hit);ORF_evidence=B8BM04 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Peptidase cysteine/serine%2C trypsin-like (IPR009003);NIAS_FLcDNA=001-017-B04;Oryzabase=20089;Expression=AK058539;TENOR=Os12t0141500-02;KEGG=Os12t0141500-02
Chr12	irgsp1_rep	five_prime_UTR	2015954	2016330	.	-	.	Parent=Os12t0141500-02
Chr12	irgsp1_rep	five_prime_UTR	2014086	2014095	.	-	.	Parent=Os12t0141500-02
Chr12	irgsp1_rep	CDS	2013679	2014085	.	-	0	Parent=Os12t0141500-02
Chr12	irgsp1_rep	CDS	2013316	2013520	.	-	1	Parent=Os12t0141500-02
Chr12	irgsp1_rep	CDS	2013159	2013233	.	-	0	Parent=Os12t0141500-02
Chr12	irgsp1_rep	three_prime_UTR	2012920	2013158	.	-	.	Parent=Os12t0141500-02
Chr12	irgsp1_rep	mRNA	2012888	2016330	.	-	.	ID=Os12t0141500-03;Name=Os12t0141500-03;Locus_id=Os12g0141500;Oryzabase Gene Symbol Synonym(s)=OsDegp13%2C DEGP13%2C OsDeg-like 3;Oryzabase Gene Name Synonym(s)=Deg protease 13%2C DEG PROTEASE 13;Note=Hypothetical conserved gene.;Transcript_evidence=AK106134 (DDBJ%2C Best hit);ORF_evidence=Q2QXV9 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Peptidase cysteine/serine%2C trypsin-like (IPR009003);NIAS_FLcDNA=001-207-G02;Oryzabase=20089;Expression=AK106134;TENOR=Os12t0141500-03;KEGG=Os12t0141500-03
Chr12	irgsp1_rep	five_prime_UTR	2015954	2016330	.	-	.	Parent=Os12t0141500-03
Chr12	irgsp1_rep	five_prime_UTR	2014086	2014095	.	-	.	Parent=Os12t0141500-03
Chr12	irgsp1_rep	CDS	2013679	2014085	.	-	0	Parent=Os12t0141500-03
Chr12	irgsp1_rep	CDS	2013316	2013517	.	-	1	Parent=Os12t0141500-03
Chr12	irgsp1_rep	CDS	2013159	2013233	.	-	0	Parent=Os12t0141500-03
Chr12	irgsp1_rep	three_prime_UTR	2012888	2013158	.	-	.	Parent=Os12t0141500-03
Chr12	irgsp1_rep	mRNA	2014909	2016330	.	-	.	ID=Os12t0141500-04;Name=Os12t0141500-04;Locus_id=Os12g0141500;Oryzabase Gene Symbol Synonym(s)=OsDegp13%2C DEGP13%2C OsDeg-like 3;Oryzabase Gene Name Synonym(s)=Deg protease 13%2C DEG PROTEASE 13;Note=Hypothetical gene.;Transcript_evidence=AK110926 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-173-D08;Oryzabase=20089;Expression=AK110926;TENOR=Os12t0141500-04;KEGG=Os12t0141500-04
Chr12	irgsp1_rep	five_prime_UTR	2016330	2016330	.	-	.	Parent=Os12t0141500-04
Chr12	irgsp1_rep	CDS	2016105	2016329	.	-	0	Parent=Os12t0141500-04
Chr12	irgsp1_rep	three_prime_UTR	2014909	2016104	.	-	.	Parent=Os12t0141500-04
Chr12	irgsp1_rep	mRNA	2016873	2022027	.	-	.	ID=Os12t0141600-00;Name=Os12t0141600-00;Locus_id=Os12g0141600;Oryzabase Gene Symbol Synonym(s)=OsDegp14%2C DEGP14%2C OsDeg-like 4;Oryzabase Gene Name Synonym(s)=Deg protease 14%2C DEG PROTEASE 14;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9GBU6 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Peptidase cysteine/serine%2C trypsin-like (IPR009003);Oryzabase=20090;TENOR=Os12t0141600-00;KEGG=Os12t0141600-00
Chr12	irgsp1_rep	CDS	2021886	2022027	.	-	0	Parent=Os12t0141600-00
Chr12	irgsp1_rep	CDS	2021703	2021807	.	-	2	Parent=Os12t0141600-00
Chr12	irgsp1_rep	CDS	2021482	2021609	.	-	2	Parent=Os12t0141600-00
Chr12	irgsp1_rep	CDS	2021233	2021382	.	-	0	Parent=Os12t0141600-00
Chr12	irgsp1_rep	CDS	2020757	2020935	.	-	0	Parent=Os12t0141600-00
Chr12	irgsp1_rep	CDS	2020131	2020174	.	-	1	Parent=Os12t0141600-00
Chr12	irgsp1_rep	CDS	2019698	2019775	.	-	2	Parent=Os12t0141600-00
Chr12	irgsp1_rep	CDS	2019469	2019600	.	-	2	Parent=Os12t0141600-00
Chr12	irgsp1_rep	CDS	2019260	2019384	.	-	2	Parent=Os12t0141600-00
Chr12	irgsp1_rep	CDS	2018915	2019184	.	-	0	Parent=Os12t0141600-00
Chr12	irgsp1_rep	CDS	2018655	2018791	.	-	0	Parent=Os12t0141600-00
Chr12	irgsp1_rep	CDS	2018011	2018094	.	-	1	Parent=Os12t0141600-00
Chr12	irgsp1_rep	CDS	2017130	2017252	.	-	1	Parent=Os12t0141600-00
Chr12	irgsp1_rep	CDS	2016873	2017065	.	-	1	Parent=Os12t0141600-00
Chr12	irgsp1_rep	mRNA	2028539	2030789	.	+	.	ID=Os12t0141800-01;Name=Os12t0141800-01;Locus_id=Os12g0141800;Note=Domain of unknown function DUF2828 domain containing protein.;Transcript_evidence=AK100388 (DDBJ%2C Best hit);ORF_evidence=B8BM06 (UniProt);InterPro=Domain of unknown function DUF2828 (IPR024553);NIAS_FLcDNA=J023085N14;TENOR=Os12t0141800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	2028539	2028598	.	+	.	Parent=Os12t0141800-01
Chr12	irgsp1_rep	CDS	2028599	2029150	.	+	0	Parent=Os12t0141800-01
Chr12	irgsp1_rep	three_prime_UTR	2029151	2030789	.	+	.	Parent=Os12t0141800-01
Chr12	irgsp1_rep	mRNA	2031777	2040591	.	-	.	ID=Os12t0141900-01;Name=Os12t0141900-01;Locus_id=Os12g0141900;Note=Similar to Membrane-anchored ubiquitin-fold protein 3.;Transcript_evidence=AK121490 (DDBJ%2C Best hit);ORF_evidence=Q6Z8K4 (UniProt);NIAS_FLcDNA=J023150L13;Expression=AK121490;TENOR=Os12t0141900-01;KEGG=Os12t0141900-01
Chr12	irgsp1_rep	five_prime_UTR	2040510	2040591	.	-	.	Parent=Os12t0141900-01
Chr12	irgsp1_rep	CDS	2040413	2040509	.	-	0	Parent=Os12t0141900-01
Chr12	irgsp1_rep	CDS	2037936	2038100	.	-	2	Parent=Os12t0141900-01
Chr12	irgsp1_rep	CDS	2036861	2036904	.	-	2	Parent=Os12t0141900-01
Chr12	irgsp1_rep	three_prime_UTR	2036253	2036860	.	-	.	Parent=Os12t0141900-01
Chr12	irgsp1_rep	three_prime_UTR	2036043	2036147	.	-	.	Parent=Os12t0141900-01
Chr12	irgsp1_rep	three_prime_UTR	2033983	2035608	.	-	.	Parent=Os12t0141900-01
Chr12	irgsp1_rep	three_prime_UTR	2032399	2033860	.	-	.	Parent=Os12t0141900-01
Chr12	irgsp1_rep	three_prime_UTR	2031777	2032257	.	-	.	Parent=Os12t0141900-01
Chr12	irgsp1_rep	mRNA	2087518	2090631	.	-	.	ID=Os12t0142600-01;Name=Os12t0142600-01;Locus_id=Os12g0142600;Note=DTW domain containing protein.;Transcript_evidence=AK067092 (DDBJ%2C Best hit);ORF_evidence=A2ZHZ9 (UniProt);InterPro=DTW (IPR005636);NIAS_FLcDNA=J013096C01;Expression=AK067092;TENOR=Os12t0142600-01;KEGG=Os12t0142600-01
Chr12	irgsp1_rep	five_prime_UTR	2090036	2090631	.	-	.	Parent=Os12t0142600-01
Chr12	irgsp1_rep	CDS	2089256	2090035	.	-	0	Parent=Os12t0142600-01
Chr12	irgsp1_rep	three_prime_UTR	2087518	2089255	.	-	.	Parent=Os12t0142600-01
Chr12	irgsp1_rep	mRNA	2094887	2097950	.	+	.	ID=Os12t0142900-02;Name=Os12t0142900-02;Locus_id=Os12g0142900;Note=Similar to H0321H01.8 protein.;Transcript_evidence=AK119906 (DDBJ%2C Best hit);ORF_evidence=Q01L72 (UniProt);GO=Biological Process: RNA-dependent DNA replication (GO:0006278),Molecular Function: RNA binding (GO:0003723),Molecular Function: RNA-directed DNA polymerase activity (GO:0003964);InterPro=Reverse transcriptase (IPR000477),Retroviral aspartyl protease (IPR013242),Peptidase aspartic (IPR021109);NIAS_FLcDNA=002-182-E10;Oryzabase=20478;TENOR=Os12t0142900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	2094887	2094887	.	+	.	Parent=Os12t0142900-02
Chr12	irgsp1_rep	CDS	2094888	2097008	.	+	0	Parent=Os12t0142900-02
Chr12	irgsp1_rep	three_prime_UTR	2097009	2097950	.	+	.	Parent=Os12t0142900-02
Chr12	irgsp1_rep	mRNA	2118063	2120604	.	+	.	ID=Os12t0143100-01;Name=Os12t0143100-01;Locus_id=Os12g0143100;Note=Similar to GRF zinc finger family protein.;Transcript_evidence=AK242606 (DDBJ%2C Best hit);ORF_evidence=Q2QXT9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin (IPR000626),Ubiquitin supergroup (IPR019955);NIAS_FLcDNA=J090014O10;TENOR=Os12t0143100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	2118063	2118187	.	+	.	Parent=Os12t0143100-01
Chr12	irgsp1_rep	CDS	2118188	2118463	.	+	0	Parent=Os12t0143100-01
Chr12	irgsp1_rep	three_prime_UTR	2118464	2120604	.	+	.	Parent=Os12t0143100-01
Chr12	irgsp1_rep	mRNA	2121026	2124289	.	+	.	ID=Os12t0143200-01;Name=Os12t0143200-01;Locus_id=Os12g0143200;Note=SPla/RYanodine receptor SPRY domain containing protein.;Transcript_evidence=AK106270 (DDBJ%2C Best hit);ORF_evidence=B6U031 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=B30.2/SPRY domain (IPR001870),SPla/RYanodine receptor SPRY (IPR003877),Concanavalin A-like lectin/glucanase (IPR008985),SPla/RYanodine receptor subgroup (IPR018355);NIAS_FLcDNA=002-100-G08;Expression=AK106270;TENOR=Os12t0143200-01;KEGG=Os12t0143200-01
Chr12	irgsp1_rep	five_prime_UTR	2121026	2121083	.	+	.	Parent=Os12t0143200-01
Chr12	irgsp1_rep	CDS	2121084	2122053	.	+	0	Parent=Os12t0143200-01
Chr12	irgsp1_rep	CDS	2123796	2124070	.	+	2	Parent=Os12t0143200-01
Chr12	irgsp1_rep	three_prime_UTR	2124071	2124289	.	+	.	Parent=Os12t0143200-01
Chr12	irgsp1_rep	mRNA	2124542	2126681	.	-	.	ID=Os12t0143300-01;Name=Os12t0143300-01;Locus_id=Os12g0143300;Note=Excinuclease ABC%2C C subunit%2C N-terminal domain containing protein.;Transcript_evidence=AK241591 (DDBJ%2C Best hit);ORF_evidence=NP_001150522.1 (RefSeq);GO=Biological Process: DNA repair (GO:0006281),Cellular Component: intracellular (GO:0005622),Molecular Function: nuclease activity (GO:0004518);InterPro=Excinuclease ABC%2C C subunit%2C N-terminal (IPR000305);NIAS_FLcDNA=J065182P08;TENOR=Os12t0143300-01;KEGG=Os12t0143300-01
Chr12	irgsp1_rep	five_prime_UTR	2126679	2126681	.	-	.	Parent=Os12t0143300-01
Chr12	irgsp1_rep	CDS	2126455	2126678	.	-	0	Parent=Os12t0143300-01
Chr12	irgsp1_rep	CDS	2125450	2125564	.	-	1	Parent=Os12t0143300-01
Chr12	irgsp1_rep	three_prime_UTR	2125369	2125449	.	-	.	Parent=Os12t0143300-01
Chr12	irgsp1_rep	three_prime_UTR	2124542	2124943	.	-	.	Parent=Os12t0143300-01
Chr12	irgsp1_rep	mRNA	2128576	2135182	.	-	.	ID=Os12t0143400-00;Name=Os12t0143400-00;Locus_id=Os12g0143400;Note=Similar to RED family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_180214.1 (RefSeq);GO=Cellular Component: nucleus (GO:0005634);InterPro=RED-like%2C C-terminal (IPR012492),RED-like%2C N-terminal (IPR012916);TENOR=Os12t0143400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	2135136	2135182	.	-	0	Parent=Os12t0143400-00
Chr12	irgsp1_rep	CDS	2133954	2134091	.	-	1	Parent=Os12t0143400-00
Chr12	irgsp1_rep	CDS	2133808	2133857	.	-	1	Parent=Os12t0143400-00
Chr12	irgsp1_rep	CDS	2133176	2133290	.	-	2	Parent=Os12t0143400-00
Chr12	irgsp1_rep	CDS	2132144	2132192	.	-	1	Parent=Os12t0143400-00
Chr12	irgsp1_rep	CDS	2131082	2131150	.	-	0	Parent=Os12t0143400-00
Chr12	irgsp1_rep	CDS	2130877	2131000	.	-	0	Parent=Os12t0143400-00
Chr12	irgsp1_rep	CDS	2130149	2130504	.	-	2	Parent=Os12t0143400-00
Chr12	irgsp1_rep	CDS	2129565	2129951	.	-	0	Parent=Os12t0143400-00
Chr12	irgsp1_rep	CDS	2128576	2128851	.	-	0	Parent=Os12t0143400-00
Chr12	irgsp1_rep	mRNA	2152838	2153718	.	+	.	ID=Os12t0143750-01;Name=Os12t0143750-01;Locus_id=Os12g0143750;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK240771 (DDBJ%2C Best hit);ORF_evidence=Q2RAT8 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J053064L05;TENOR=Os12t0143750-01;KEGG=Os12t0143750-01 (EC:6.3.2.19)
Chr12	irgsp1_rep	five_prime_UTR	2152838	2153039	.	+	.	Parent=Os12t0143750-01
Chr12	irgsp1_rep	CDS	2153040	2153435	.	+	0	Parent=Os12t0143750-01
Chr12	irgsp1_rep	three_prime_UTR	2153436	2153718	.	+	.	Parent=Os12t0143750-01
Chr12	irgsp1_rep	mRNA	2154058	2158284	.	-	.	ID=Os12t0143800-01;Name=Os12t0143800-01;Locus_id=Os12g0143800;RAP-DB Gene Symbol Synonym(s)=DMC1A%2C OsDMC1A%2C OsDmc1A%2C Dmc1A%2C DMC1%2C OsDMC1%2C RiLIM15A;RAP-DB Gene Name Synonym(s)=MEIOTIC PROTEIN DMC1A%2C MEIOTIC PROTEIN Dmc1A;CGSNL Gene Symbol=DMC1A;CGSNL Gene Name=MEIOTIC PROTEIN DMC1A;Oryzabase Gene Symbol Synonym(s)=OsDMC1A%2C OsDmc1A%2C Dmc1A%2C DMC1%2C OsDMC1%2C RiLIM15A%2C OsRad51;Oryzabase Gene Name Synonym(s)=MEIOTIC PROTEIN Dmc1A%2C DNA repair protein Rad51;Note=Meiosis-specific DNA recombinase%2C Synaptonemal complex (SC) assembly;Transcript_evidence=AB079873,AK110641;ORF_evidence=Q7GBF8;GO=Biological Process: DNA metabolic process (GO:0006259),Biological Process: DNA repair (GO:0006281),Biological Process: reciprocal meiotic recombination (GO:0007131),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP binding (GO:0005524),Molecular Function: DNA-dependent ATPase activity (GO:0008094),Cellular Component: nucleus (GO:0005634);InterPro=DNA recombination and repair protein%2C RecA-like (IPR016467),Meiotic recombinase Dmc1 (IPR011940),DNA repair Rad51/transcription factor NusA%2C alpha-helical (IPR010995),DNA recombination and repair protein Rad51%2C C-terminal (IPR013632),DNA recombination and repair protein RecA-like%2C ATP-binding domain (IPR020588),P-loop containing nucleoside triphosphate hydrolase (IPR027417),DNA recombination and repair protein RecA%2C monomer-monomer interface (IPR020587);NIAS_FLcDNA=002-169-C11;Manual Curation=May 16%2C 2016;Literature_PMID=26960731,18583359;Oryzabase=8507;Expression=AK110641;TENOR=Os12t0143800-01;KEGG=Os12t0143800-01
Chr12	irgsp1_rep	five_prime_UTR	2158205	2158284	.	-	.	Parent=Os12t0143800-01
Chr12	irgsp1_rep	five_prime_UTR	2158090	2158097	.	-	.	Parent=Os12t0143800-01
Chr12	irgsp1_rep	CDS	2157990	2158089	.	-	0	Parent=Os12t0143800-01
Chr12	irgsp1_rep	CDS	2157021	2157112	.	-	2	Parent=Os12t0143800-01
Chr12	irgsp1_rep	CDS	2156803	2156874	.	-	0	Parent=Os12t0143800-01
Chr12	irgsp1_rep	CDS	2156671	2156709	.	-	0	Parent=Os12t0143800-01
Chr12	irgsp1_rep	CDS	2156444	2156501	.	-	0	Parent=Os12t0143800-01
Chr12	irgsp1_rep	CDS	2156313	2156358	.	-	2	Parent=Os12t0143800-01
Chr12	irgsp1_rep	CDS	2155683	2155728	.	-	1	Parent=Os12t0143800-01
Chr12	irgsp1_rep	CDS	2155533	2155594	.	-	0	Parent=Os12t0143800-01
Chr12	irgsp1_rep	CDS	2155365	2155431	.	-	1	Parent=Os12t0143800-01
Chr12	irgsp1_rep	CDS	2155191	2155283	.	-	0	Parent=Os12t0143800-01
Chr12	irgsp1_rep	CDS	2155041	2155109	.	-	0	Parent=Os12t0143800-01
Chr12	irgsp1_rep	CDS	2154871	2154949	.	-	0	Parent=Os12t0143800-01
Chr12	irgsp1_rep	CDS	2154619	2154785	.	-	2	Parent=Os12t0143800-01
Chr12	irgsp1_rep	CDS	2154333	2154377	.	-	0	Parent=Os12t0143800-01
Chr12	irgsp1_rep	three_prime_UTR	2154058	2154332	.	-	.	Parent=Os12t0143800-01
Chr12	irgsp1_rep	mRNA	2161664	2170063	.	-	.	ID=Os12t0143900-01;Name=Os12t0143900-01;Locus_id=Os12g0143900;CGSNL Gene Symbol=LACS7;CGSNL Gene Name=LONG-CHAIN ACYL-COA SYNTHETASE 7;Oryzabase Gene Symbol Synonym(s)=OsLACS7;Oryzabase Gene Name Synonym(s)=long-chain acyl-CoA synthetase 7;Note=Similar to Long chain acyl-CoA synthetase 6 (EC 6.2.1.3).;Transcript_evidence=AK065216 (DDBJ%2C Best hit);ORF_evidence=Q2QXT2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873),AMP-binding%2C conserved site (IPR020845);NIAS_FLcDNA=J013002G08;Oryzabase=15287;Expression=AK065216;TENOR=Os12t0143900-01;KEGG=Os12t0143900-01 (EC:6.2.1.3)
Chr12	irgsp1_rep	five_prime_UTR	2169934	2170063	.	-	.	Parent=Os12t0143900-01
Chr12	irgsp1_rep	CDS	2169780	2169933	.	-	0	Parent=Os12t0143900-01
Chr12	irgsp1_rep	CDS	2169213	2169273	.	-	2	Parent=Os12t0143900-01
Chr12	irgsp1_rep	CDS	2169060	2169137	.	-	1	Parent=Os12t0143900-01
Chr12	irgsp1_rep	CDS	2168507	2168578	.	-	1	Parent=Os12t0143900-01
Chr12	irgsp1_rep	CDS	2168337	2168418	.	-	1	Parent=Os12t0143900-01
Chr12	irgsp1_rep	CDS	2168074	2168179	.	-	0	Parent=Os12t0143900-01
Chr12	irgsp1_rep	CDS	2167920	2167996	.	-	2	Parent=Os12t0143900-01
Chr12	irgsp1_rep	CDS	2167449	2167493	.	-	0	Parent=Os12t0143900-01
Chr12	irgsp1_rep	CDS	2167261	2167347	.	-	0	Parent=Os12t0143900-01
Chr12	irgsp1_rep	CDS	2165906	2165995	.	-	0	Parent=Os12t0143900-01
Chr12	irgsp1_rep	CDS	2165732	2165811	.	-	0	Parent=Os12t0143900-01
Chr12	irgsp1_rep	CDS	2165533	2165626	.	-	1	Parent=Os12t0143900-01
Chr12	irgsp1_rep	CDS	2164758	2164846	.	-	0	Parent=Os12t0143900-01
Chr12	irgsp1_rep	CDS	2164537	2164625	.	-	1	Parent=Os12t0143900-01
Chr12	irgsp1_rep	CDS	2164222	2164351	.	-	2	Parent=Os12t0143900-01
Chr12	irgsp1_rep	CDS	2164012	2164130	.	-	1	Parent=Os12t0143900-01
Chr12	irgsp1_rep	CDS	2163744	2163867	.	-	2	Parent=Os12t0143900-01
Chr12	irgsp1_rep	CDS	2163572	2163658	.	-	1	Parent=Os12t0143900-01
Chr12	irgsp1_rep	CDS	2162759	2162862	.	-	1	Parent=Os12t0143900-01
Chr12	irgsp1_rep	CDS	2162595	2162680	.	-	2	Parent=Os12t0143900-01
Chr12	irgsp1_rep	CDS	2162287	2162373	.	-	0	Parent=Os12t0143900-01
Chr12	irgsp1_rep	CDS	2162104	2162190	.	-	0	Parent=Os12t0143900-01
Chr12	irgsp1_rep	CDS	2161935	2162030	.	-	0	Parent=Os12t0143900-01
Chr12	irgsp1_rep	three_prime_UTR	2161664	2161934	.	-	.	Parent=Os12t0143900-01
Chr12	irgsp1_rep	mRNA	2161889	2169918	.	+	.	ID=Os12t0143950-00;Name=Os12t0143950-00;Locus_id=Os12g0143950;Note=Hypothetical protein.;Transcript_evidence=tplb0021a08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0143950-00
Chr12	irgsp1_rep	five_prime_UTR	2161889	2162038	.	+	.	Parent=Os12t0143950-00
Chr12	irgsp1_rep	five_prime_UTR	2162112	2162193	.	+	.	Parent=Os12t0143950-00
Chr12	irgsp1_rep	five_prime_UTR	2162282	2162370	.	+	.	Parent=Os12t0143950-00
Chr12	irgsp1_rep	five_prime_UTR	2162586	2162666	.	+	.	Parent=Os12t0143950-00
Chr12	irgsp1_rep	five_prime_UTR	2162745	2162852	.	+	.	Parent=Os12t0143950-00
Chr12	irgsp1_rep	five_prime_UTR	2163566	2163642	.	+	.	Parent=Os12t0143950-00
Chr12	irgsp1_rep	five_prime_UTR	2163726	2163858	.	+	.	Parent=Os12t0143950-00
Chr12	irgsp1_rep	five_prime_UTR	2164005	2164110	.	+	.	Parent=Os12t0143950-00
Chr12	irgsp1_rep	five_prime_UTR	2164200	2164325	.	+	.	Parent=Os12t0143950-00
Chr12	irgsp1_rep	five_prime_UTR	2164509	2164619	.	+	.	Parent=Os12t0143950-00
Chr12	irgsp1_rep	five_prime_UTR	2164749	2164845	.	+	.	Parent=Os12t0143950-00
Chr12	irgsp1_rep	five_prime_UTR	2165532	2165609	.	+	.	Parent=Os12t0143950-00
Chr12	irgsp1_rep	five_prime_UTR	2165715	2165810	.	+	.	Parent=Os12t0143950-00
Chr12	irgsp1_rep	five_prime_UTR	2165905	2165999	.	+	.	Parent=Os12t0143950-00
Chr12	irgsp1_rep	five_prime_UTR	2167270	2167343	.	+	.	Parent=Os12t0143950-00
Chr12	irgsp1_rep	five_prime_UTR	2167445	2167489	.	+	.	Parent=Os12t0143950-00
Chr12	irgsp1_rep	five_prime_UTR	2167915	2167998	.	+	.	Parent=Os12t0143950-00
Chr12	irgsp1_rep	five_prime_UTR	2168078	2168182	.	+	.	Parent=Os12t0143950-00
Chr12	irgsp1_rep	five_prime_UTR	2168342	2168403	.	+	.	Parent=Os12t0143950-00
Chr12	irgsp1_rep	five_prime_UTR	2168493	2168563	.	+	.	Parent=Os12t0143950-00
Chr12	irgsp1_rep	five_prime_UTR	2169043	2169083	.	+	.	Parent=Os12t0143950-00
Chr12	irgsp1_rep	CDS	2169084	2169137	.	+	0	Parent=Os12t0143950-00
Chr12	irgsp1_rep	CDS	2169213	2169252	.	+	0	Parent=Os12t0143950-00
Chr12	irgsp1_rep	CDS	2169754	2169918	.	+	2	Parent=Os12t0143950-00
Chr12	irgsp1_rep	mRNA	2171774	2174742	.	+	.	ID=Os12t0144000-00;Name=Os12t0144000-00;Locus_id=Os12g0144000;Note=Similar to predicted protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QXS9 (UniProt);TENOR=Os12t0144000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	2171774	2171834	.	+	0	Parent=Os12t0144000-00
Chr12	irgsp1_rep	CDS	2171951	2172024	.	+	2	Parent=Os12t0144000-00
Chr12	irgsp1_rep	CDS	2172266	2172374	.	+	0	Parent=Os12t0144000-00
Chr12	irgsp1_rep	CDS	2172789	2172871	.	+	2	Parent=Os12t0144000-00
Chr12	irgsp1_rep	CDS	2173023	2173181	.	+	0	Parent=Os12t0144000-00
Chr12	irgsp1_rep	CDS	2174408	2174509	.	+	0	Parent=Os12t0144000-00
Chr12	irgsp1_rep	CDS	2174593	2174742	.	+	0	Parent=Os12t0144000-00
Chr12	irgsp1_rep	mRNA	2176948	2180811	.	+	.	ID=Os12t0144200-00;Name=Os12t0144200-00;Locus_id=Os12g0144200;Note=Similar to Jasmonate-induced protein.;Transcript_evidence=EU959380 (DDBJ);ORF_evidence=A7LM74 (UniProt);InterPro=Plant disease resistance response protein (IPR004265);TENOR=Os12t0144200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	2176948	2177264	.	+	0	Parent=Os12t0144200-00
Chr12	irgsp1_rep	CDS	2179098	2179263	.	+	1	Parent=Os12t0144200-00
Chr12	irgsp1_rep	CDS	2180063	2180089	.	+	0	Parent=Os12t0144200-00
Chr12	irgsp1_rep	three_prime_UTR	2180090	2180276	.	+	.	Parent=Os12t0144200-00
Chr12	irgsp1_rep	three_prime_UTR	2180674	2180811	.	+	.	Parent=Os12t0144200-00
Chr12	irgsp1_rep	mRNA	2176990	2180262	.	-	.	ID=Os12t0144401-00;Name=Os12t0144401-00;Locus_id=Os12g0144401;Note=Hypothetical protein.;Transcript_evidence=BT016217 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0144401-00
Chr12	irgsp1_rep	five_prime_UTR	2180055	2180262	.	-	.	Parent=Os12t0144401-00
Chr12	irgsp1_rep	five_prime_UTR	2179249	2179258	.	-	.	Parent=Os12t0144401-00
Chr12	irgsp1_rep	CDS	2179093	2179248	.	-	0	Parent=Os12t0144401-00
Chr12	irgsp1_rep	CDS	2177208	2177267	.	-	0	Parent=Os12t0144401-00
Chr12	irgsp1_rep	three_prime_UTR	2176990	2177207	.	-	.	Parent=Os12t0144401-00
Chr12	irgsp1_rep	mRNA	2193901	2197129	.	+	.	ID=Os12t0144600-01;Name=Os12t0144600-01;Locus_id=Os12g0144600;CGSNL Gene Symbol=HMP46;CGSNL Gene Name=HEAVY METAL-ASSOCIATED PROTEIN 46;Oryzabase Gene Symbol Synonym(s)=OsHMP46;Oryzabase Gene Name Synonym(s)=Heavy-metal-associated domain-containing protein%2C Heavy metal-associated protein 46;Note=Heavy metal transport/detoxification protein domain containing protein.;Transcript_evidence=AK242916 (DDBJ%2C Best hit);ORF_evidence=Q2QXS5 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);NIAS_FLcDNA=J090083M18;Oryzabase=18465;TENOR=Os12t0144600-01;KEGG=Os12t0144600-01
Chr12	irgsp1_rep	five_prime_UTR	2193901	2194066	.	+	.	Parent=Os12t0144600-01
Chr12	irgsp1_rep	five_prime_UTR	2194196	2194262	.	+	.	Parent=Os12t0144600-01
Chr12	irgsp1_rep	CDS	2194263	2194292	.	+	0	Parent=Os12t0144600-01
Chr12	irgsp1_rep	CDS	2194519	2194594	.	+	0	Parent=Os12t0144600-01
Chr12	irgsp1_rep	CDS	2194698	2196166	.	+	2	Parent=Os12t0144600-01
Chr12	irgsp1_rep	three_prime_UTR	2196167	2197129	.	+	.	Parent=Os12t0144600-01
Chr12	irgsp1_rep	mRNA	2199978	2200731	.	-	.	ID=Os12t0144700-01;Name=Os12t0144700-01;Locus_id=Os12g0144700;Note=Hypothetical gene.;Transcript_evidence=AK109027 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-154-B08;Expression=AK109027;TENOR=Os12t0144700-01;KEGG=Os12t0144700-01
Chr12	irgsp1_rep	five_prime_UTR	2200562	2200731	.	-	.	Parent=Os12t0144700-01
Chr12	irgsp1_rep	CDS	2200337	2200561	.	-	0	Parent=Os12t0144700-01
Chr12	irgsp1_rep	three_prime_UTR	2199978	2200336	.	-	.	Parent=Os12t0144700-01
Chr12	irgsp1_rep	mRNA	2215943	2219491	.	-	.	ID=Os12t0145100-01;Name=Os12t0145100-01;Locus_id=Os12g0145100;Note=Similar to Wali7 protein (Fragment).;Transcript_evidence=AK067141 (DDBJ%2C Best hit),AK104102 (DDBJ%2C Best hit),AK104347 (DDBJ%2C Best hit);ORF_evidence=Q43661 (UniProt);NIAS_FLcDNA=J013095J21,006-202-B06,001-034-F10;TENOR=Os12t0145100-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	2219318	2219491	.	-	.	Parent=Os12t0145100-01
Chr12	irgsp1_rep	CDS	2219115	2219317	.	-	0	Parent=Os12t0145100-01
Chr12	irgsp1_rep	CDS	2216977	2217217	.	-	1	Parent=Os12t0145100-01
Chr12	irgsp1_rep	CDS	2216731	2216851	.	-	0	Parent=Os12t0145100-01
Chr12	irgsp1_rep	CDS	2216477	2216592	.	-	2	Parent=Os12t0145100-01
Chr12	irgsp1_rep	CDS	2216181	2216216	.	-	0	Parent=Os12t0145100-01
Chr12	irgsp1_rep	three_prime_UTR	2215943	2216180	.	-	.	Parent=Os12t0145100-01
Chr12	irgsp1_rep	mRNA	2216475	2219321	.	+	.	ID=Os12t0145150-00;Name=Os12t0145150-00;Locus_id=Os12g0145150;Note=Hypothetical gene.;Transcript_evidence=BT016691 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0145150-00;KEGG=Os12t0145150-00
Chr12	irgsp1_rep	five_prime_UTR	2216475	2216611	.	+	.	Parent=Os12t0145150-00
Chr12	irgsp1_rep	five_prime_UTR	2216750	2216812	.	+	.	Parent=Os12t0145150-00
Chr12	irgsp1_rep	CDS	2216813	2216813	.	+	0	Parent=Os12t0145150-00
Chr12	irgsp1_rep	CDS	2216939	2217195	.	+	2	Parent=Os12t0145150-00
Chr12	irgsp1_rep	CDS	2219095	2219217	.	+	0	Parent=Os12t0145150-00
Chr12	irgsp1_rep	three_prime_UTR	2219218	2219321	.	+	.	Parent=Os12t0145150-00
Chr12	irgsp1_rep	mRNA	2227383	2228896	.	+	.	ID=Os12t0145200-01;Name=Os12t0145200-01;Locus_id=Os12g0145200;Note=Similar to Protein MONOCULM 1.;Transcript_evidence=AK111428 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=002-182-H05;TENOR=Os12t0145200-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	2227383	2227580	.	+	.	Parent=Os12t0145200-01
Chr12	irgsp1_rep	CDS	2227581	2228453	.	+	0	Parent=Os12t0145200-01
Chr12	irgsp1_rep	three_prime_UTR	2228454	2228896	.	+	.	Parent=Os12t0145200-01
Chr12	irgsp1_rep	mRNA	2231444	2234757	.	+	.	ID=Os12t0145400-01;Name=Os12t0145400-01;Locus_id=Os12g0145400;Oryzabase Gene Symbol Synonym(s)=OsTBL23%2C TBL23;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 23;Note=Protein of unknown function DUF231%2C plant domain containing protein.;Transcript_evidence=AK063322 (DDBJ%2C Best hit);ORF_evidence=B9GBV4 (UniProt);InterPro=Domain of unknown function DUF231%2C plant (IPR004253);NIAS_FLcDNA=001-113-H03;Oryzabase=21478;Expression=AK063322;TENOR=Os12t0145400-01;KEGG=Os12t0145400-01
Chr12	irgsp1_rep	five_prime_UTR	2231444	2231446	.	+	.	Parent=Os12t0145400-01
Chr12	irgsp1_rep	CDS	2231447	2231823	.	+	0	Parent=Os12t0145400-01
Chr12	irgsp1_rep	CDS	2233132	2233527	.	+	1	Parent=Os12t0145400-01
Chr12	irgsp1_rep	CDS	2233629	2233787	.	+	1	Parent=Os12t0145400-01
Chr12	irgsp1_rep	CDS	2234080	2234458	.	+	1	Parent=Os12t0145400-01
Chr12	irgsp1_rep	three_prime_UTR	2234459	2234757	.	+	.	Parent=Os12t0145400-01
Chr12	irgsp1_rep	mRNA	2236066	2239402	.	+	.	ID=Os12t0145500-01;Name=Os12t0145500-01;Locus_id=Os12g0145500;Oryzabase Gene Symbol Synonym(s)=OsFKBP42a;Oryzabase Gene Name Synonym(s)=FK506 binding protein 42a;Note=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type domain containing protein.;Transcript_evidence=AK065114 (DDBJ%2C Best hit);ORF_evidence=Q2RAK4 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Peptidyl-prolyl cis-trans isomerase%2C FKBP-type%2C domain (IPR001179),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734),Elongated TPR repeat-containing domain (IPR023114),Peptidyl-prolyl cis-trans isomerase%2C FKBP-type (IPR023566);NIAS_FLcDNA=J013001O06;Oryzabase=10039;Expression=AK065114;TENOR=Os12t0145500-01;KEGG=Os12t0145500-01
Chr12	irgsp1_rep	five_prime_UTR	2236066	2236161	.	+	.	Parent=Os12t0145500-01
Chr12	irgsp1_rep	CDS	2236162	2236216	.	+	0	Parent=Os12t0145500-01
Chr12	irgsp1_rep	CDS	2237135	2237314	.	+	2	Parent=Os12t0145500-01
Chr12	irgsp1_rep	CDS	2237431	2237520	.	+	2	Parent=Os12t0145500-01
Chr12	irgsp1_rep	CDS	2237900	2238084	.	+	2	Parent=Os12t0145500-01
Chr12	irgsp1_rep	CDS	2238189	2238311	.	+	0	Parent=Os12t0145500-01
Chr12	irgsp1_rep	CDS	2238390	2238542	.	+	0	Parent=Os12t0145500-01
Chr12	irgsp1_rep	CDS	2238891	2239217	.	+	0	Parent=Os12t0145500-01
Chr12	irgsp1_rep	three_prime_UTR	2239218	2239402	.	+	.	Parent=Os12t0145500-01
Chr12	irgsp1_rep	mRNA	2240010	2241632	.	-	.	ID=Os12t0145566-01;Name=Os12t0145566-01;Locus_id=Os12g0145566;Note=Similar to cDNA clone:J033057N11%2C full insert sequence.;Transcript_evidence=AK243211 (DDBJ%2C Best hit);ORF_evidence=B7ES31 (UniProt);NIAS_FLcDNA=J100042E12;TENOR=Os12t0145566-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	2240495	2241632	.	-	.	Parent=Os12t0145566-01
Chr12	irgsp1_rep	CDS	2240243	2240494	.	-	0	Parent=Os12t0145566-01
Chr12	irgsp1_rep	three_prime_UTR	2240010	2240242	.	-	.	Parent=Os12t0145566-01
Chr12	irgsp1_rep	mRNA	2242307	2245032	.	+	.	ID=Os12t0145632-00;Name=Os12t0145632-00;Locus_id=Os12g0145632;Note=Conserved hypothetical protein.;Transcript_evidence=AK361906 (DDBJ);ORF_evidence=NP_001065748.1 (RefSeq);TENOR=Os12t0145632-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	2242307	2242717	.	+	0	Parent=Os12t0145632-00
Chr12	irgsp1_rep	CDS	2242800	2242928	.	+	0	Parent=Os12t0145632-00
Chr12	irgsp1_rep	CDS	2243064	2243127	.	+	0	Parent=Os12t0145632-00
Chr12	irgsp1_rep	CDS	2243224	2243234	.	+	2	Parent=Os12t0145632-00
Chr12	irgsp1_rep	three_prime_UTR	2243235	2243370	.	+	.	Parent=Os12t0145632-00
Chr12	irgsp1_rep	three_prime_UTR	2243852	2244061	.	+	.	Parent=Os12t0145632-00
Chr12	irgsp1_rep	three_prime_UTR	2244161	2244499	.	+	.	Parent=Os12t0145632-00
Chr12	irgsp1_rep	three_prime_UTR	2244598	2244821	.	+	.	Parent=Os12t0145632-00
Chr12	irgsp1_rep	three_prime_UTR	2244878	2245032	.	+	.	Parent=Os12t0145632-00
Chr12	irgsp1_rep	mRNA	2245552	2249823	.	-	.	ID=Os12t0145700-01;Name=Os12t0145700-01;Locus_id=Os12g0145700;RAP-DB Gene Symbol Synonym(s)=OsPK4;RAP-DB Gene Name Synonym(s)=pyruvate kinase 4;Note=Pyruvate kinase%2C Regulation of grain filling;Transcript_evidence=AK071391;ORF_evidence=Q2QXR8;GO=Biological Process: glycolytic process (GO:0006096),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyruvate kinase activity (GO:0004743),Molecular Function: potassium ion binding (GO:0030955);InterPro=Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily (IPR015813),Pyruvate kinase%2C C-terminal domain superfamily (IPR036918),Pyruvate kinase-like domain superfamily (IPR040442),Pyruvate kinase-like%2C insert domain superfamily (IPR011037),Pyruvate kinase%2C insert domain superfamily (IPR015806),Pyruvate kinase (IPR001697),Pyruvate kinase%2C barrel (IPR015793),Pyruvate kinase%2C C-terminal (IPR015795);NIAS_FLcDNA=J023098A04;Manual Curation=May 11%2C 2020;Literature_PMID=32376763;Expression=AK071391;TENOR=Os12t0145700-01;KEGG=Os12t0145700-01 (EC:2.7.1.40);Subcellular location=mitochondrion (GO:0005739), cytosol (GO:0005829)
Chr12	irgsp1_rep	five_prime_UTR	2249637	2249823	.	-	.	Parent=Os12t0145700-01
Chr12	irgsp1_rep	CDS	2249568	2249636	.	-	0	Parent=Os12t0145700-01
Chr12	irgsp1_rep	CDS	2249371	2249467	.	-	0	Parent=Os12t0145700-01
Chr12	irgsp1_rep	CDS	2249180	2249277	.	-	2	Parent=Os12t0145700-01
Chr12	irgsp1_rep	CDS	2248883	2249038	.	-	0	Parent=Os12t0145700-01
Chr12	irgsp1_rep	CDS	2248566	2248643	.	-	0	Parent=Os12t0145700-01
Chr12	irgsp1_rep	CDS	2248314	2248445	.	-	0	Parent=Os12t0145700-01
Chr12	irgsp1_rep	CDS	2248005	2248085	.	-	0	Parent=Os12t0145700-01
Chr12	irgsp1_rep	CDS	2247769	2247840	.	-	0	Parent=Os12t0145700-01
Chr12	irgsp1_rep	CDS	2247596	2247685	.	-	0	Parent=Os12t0145700-01
Chr12	irgsp1_rep	CDS	2247273	2247417	.	-	0	Parent=Os12t0145700-01
Chr12	irgsp1_rep	CDS	2247109	2247197	.	-	2	Parent=Os12t0145700-01
Chr12	irgsp1_rep	CDS	2246875	2246970	.	-	0	Parent=Os12t0145700-01
Chr12	irgsp1_rep	CDS	2246665	2246732	.	-	0	Parent=Os12t0145700-01
Chr12	irgsp1_rep	CDS	2246482	2246581	.	-	1	Parent=Os12t0145700-01
Chr12	irgsp1_rep	CDS	2246290	2246349	.	-	0	Parent=Os12t0145700-01
Chr12	irgsp1_rep	CDS	2245746	2245898	.	-	0	Parent=Os12t0145700-01
Chr12	irgsp1_rep	three_prime_UTR	2245552	2245745	.	-	.	Parent=Os12t0145700-01
Chr12	irgsp1_rep	mRNA	2251302	2254010	.	-	.	ID=Os12t0145900-01;Name=Os12t0145900-01;Locus_id=Os12g0145900;Note=Similar to Leucine Rich Repeat family protein%2C expressed.;Transcript_evidence=AK121769 (DDBJ%2C Best hit);ORF_evidence=Q2QXR6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033092C05;TENOR=Os12t0145900-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	2253947	2254010	.	-	.	Parent=Os12t0145900-01
Chr12	irgsp1_rep	CDS	2252284	2253946	.	-	0	Parent=Os12t0145900-01
Chr12	irgsp1_rep	CDS	2251470	2252188	.	-	2	Parent=Os12t0145900-01
Chr12	irgsp1_rep	three_prime_UTR	2251302	2251469	.	-	.	Parent=Os12t0145900-01
Chr12	irgsp1_rep	mRNA	2251815	2253806	.	+	.	ID=Os12t0145916-00;Name=Os12t0145916-00;Locus_id=Os12g0145916;Note=Hypothetical protein.;Transcript_evidence=tplb0052f20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0145916-00
Chr12	irgsp1_rep	five_prime_UTR	2251815	2252183	.	+	.	Parent=Os12t0145916-00
Chr12	irgsp1_rep	five_prime_UTR	2252291	2252296	.	+	.	Parent=Os12t0145916-00
Chr12	irgsp1_rep	CDS	2252297	2252618	.	+	0	Parent=Os12t0145916-00
Chr12	irgsp1_rep	CDS	2253530	2253744	.	+	2	Parent=Os12t0145916-00
Chr12	irgsp1_rep	three_prime_UTR	2253745	2253806	.	+	.	Parent=Os12t0145916-00
Chr12	irgsp1_rep	mRNA	2264761	2265131	.	+	.	ID=Os12t0146000-00;Name=Os12t0146000-00;Locus_id=Os12g0146000;Note=Similar to RING-H2 finger protein ATL1I.;Transcript_evidence=EU943039 (DDBJ);ORF_evidence=NP_001151506.1 (RefSeq);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083);TENOR=Os12t0146000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	2264761	2264978	.	+	.	Parent=Os12t0146000-00
Chr12	irgsp1_rep	CDS	2264979	2265131	.	+	0	Parent=Os12t0146000-00
Chr12	irgsp1_rep	mRNA	2276710	2277389	.	+	.	ID=Os12t0146275-00;Name=Os12t0146275-00;Locus_id=Os12g0146275;Note=Non-protein coding transcript.;Transcript_evidence=CT835606 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os12t0146275-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	exon	2276710	2277068	.	+	.	Parent=Os12t0146275-00
Chr12	irgsp1_rep	exon	2277144	2277389	.	+	.	Parent=Os12t0146275-00
Chr12	irgsp1_rep	mRNA	2284852	2287970	.	-	.	ID=Os12t0146400-01;Name=Os12t0146400-01;Locus_id=Os12g0146400;Note=Conserved hypothetical protein.;Transcript_evidence=AK241442 (DDBJ%2C Best hit);ORF_evidence=NP_001176793.1 (RefSeq);NIAS_FLcDNA=J065162K17;TENOR=Os12t0146400-01;KEGG=Os12t0146400-01
Chr12	irgsp1_rep	five_prime_UTR	2287920	2287970	.	-	.	Parent=Os12t0146400-01
Chr12	irgsp1_rep	CDS	2287743	2287919	.	-	0	Parent=Os12t0146400-01
Chr12	irgsp1_rep	CDS	2287122	2287265	.	-	0	Parent=Os12t0146400-01
Chr12	irgsp1_rep	three_prime_UTR	2284852	2287121	.	-	.	Parent=Os12t0146400-01
Chr12	irgsp1_rep	mRNA	2288582	2289757	.	-	.	ID=Os12t0146500-01;Name=Os12t0146500-01;Locus_id=Os12g0146500;CGSNL Gene Symbol=DUF668-12;CGSNL Gene Name=DUF668 FAMILY MEMBER 12;Oryzabase Gene Symbol Synonym(s)=OsDUF668-12;Oryzabase Gene Name Synonym(s)=DUF668 family member 12;Note=Protein of unknown function DUF668 domain containing protein.;Transcript_evidence=AK107470 (DDBJ%2C Best hit);ORF_evidence=Q2QXR0 (UniProt);InterPro=Protein of unknown function DUF668 (IPR007700);NIAS_FLcDNA=002-129-B03;Oryzabase=23488;TENOR=Os12t0146500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	2289756	2289757	.	-	.	Parent=Os12t0146500-01
Chr12	irgsp1_rep	CDS	2288826	2289755	.	-	0	Parent=Os12t0146500-01
Chr12	irgsp1_rep	three_prime_UTR	2288582	2288825	.	-	.	Parent=Os12t0146500-01
Chr12	irgsp1_rep	mRNA	2288904	2290613	.	+	.	ID=Os12t0146625-00;Name=Os12t0146625-00;Locus_id=Os12g0146625;Note=Hypothetical gene.;Transcript_evidence=EU943640 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0146625-00;KEGG=Os12t0146625-00
Chr12	irgsp1_rep	five_prime_UTR	2288904	2289117	.	+	.	Parent=Os12t0146625-00
Chr12	irgsp1_rep	CDS	2289118	2289342	.	+	0	Parent=Os12t0146625-00
Chr12	irgsp1_rep	three_prime_UTR	2289343	2290613	.	+	.	Parent=Os12t0146625-00
Chr12	irgsp1_rep	mRNA	2305477	2309498	.	+	.	ID=Os12t0147000-00;Name=Os12t0147000-00;Locus_id=Os12g0147000;Note=Similar to DNA binding protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B6TPI7 (UniProt);InterPro=Domain of unknown function DUF296 (IPR005175);TENOR=Os12t0147000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	2305477	2305885	.	+	0	Parent=Os12t0147000-00
Chr12	irgsp1_rep	CDS	2306365	2306432	.	+	2	Parent=Os12t0147000-00
Chr12	irgsp1_rep	CDS	2306536	2306667	.	+	0	Parent=Os12t0147000-00
Chr12	irgsp1_rep	CDS	2308764	2308922	.	+	0	Parent=Os12t0147000-00
Chr12	irgsp1_rep	CDS	2309121	2309498	.	+	0	Parent=Os12t0147000-00
Chr12	irgsp1_rep	mRNA	2312450	2313217	.	+	.	ID=Os12t0147200-01;Name=Os12t0147200-01;Locus_id=Os12g0147200;Note=Conserved hypothetical protein.;Transcript_evidence=AK063680 (DDBJ%2C Best hit);ORF_evidence=A2ZI22 (UniProt);NIAS_FLcDNA=001-119-E05;Expression=AK063680;TENOR=Os12t0147200-01;KEGG=Os12t0147200-01
Chr12	irgsp1_rep	five_prime_UTR	2312450	2312637	.	+	.	Parent=Os12t0147200-01
Chr12	irgsp1_rep	CDS	2312638	2313081	.	+	0	Parent=Os12t0147200-01
Chr12	irgsp1_rep	three_prime_UTR	2313082	2313217	.	+	.	Parent=Os12t0147200-01
Chr12	irgsp1_rep	mRNA	2316974	2318143	.	-	.	ID=Os12t0147300-00;Name=Os12t0147300-00;Locus_id=Os12g0147300;Note=Similar to Formin-like protein 14.;Transcript_evidence=BT065693 (DDBJ);ORF_evidence=Q0DLG0 (UniProt);TENOR=Os12t0147300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	2317346	2318143	.	-	0	Parent=Os12t0147300-00
Chr12	irgsp1_rep	CDS	2317002	2317262	.	-	0	Parent=Os12t0147300-00
Chr12	irgsp1_rep	three_prime_UTR	2316974	2317001	.	-	.	Parent=Os12t0147300-00
Chr12	irgsp1_rep	mRNA	2318854	2321807	.	+	.	ID=Os12t0147500-01;Name=Os12t0147500-01;Locus_id=Os12g0147500;Note=DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal domain containing protein.;Transcript_evidence=AK066803 (DDBJ%2C Best hit);ORF_evidence=NP_001150848.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545);NIAS_FLcDNA=J013075G07;Expression=AK066803;TENOR=Os12t0147500-01;KEGG=Os12t0147500-01
Chr12	irgsp1_rep	five_prime_UTR	2318854	2318960	.	+	.	Parent=Os12t0147500-01
Chr12	irgsp1_rep	CDS	2318961	2319659	.	+	0	Parent=Os12t0147500-01
Chr12	irgsp1_rep	CDS	2319753	2319841	.	+	0	Parent=Os12t0147500-01
Chr12	irgsp1_rep	CDS	2319957	2320056	.	+	1	Parent=Os12t0147500-01
Chr12	irgsp1_rep	CDS	2320300	2320557	.	+	0	Parent=Os12t0147500-01
Chr12	irgsp1_rep	CDS	2320907	2321076	.	+	0	Parent=Os12t0147500-01
Chr12	irgsp1_rep	CDS	2321309	2321579	.	+	1	Parent=Os12t0147500-01
Chr12	irgsp1_rep	three_prime_UTR	2321580	2321807	.	+	.	Parent=Os12t0147500-01
Chr12	irgsp1_rep	mRNA	2338072	2339170	.	+	.	ID=Os12t0147800-01;Name=Os12t0147800-01;Locus_id=Os12g0147800;RAP-DB Gene Symbol Synonym(s)=OsPSK5%2C PSK5;RAP-DB Gene Name Synonym(s)=phytosulfokine 5;CGSNL Gene Symbol=PSK3;CGSNL Gene Name=PHYTOSULFOKINE 3;Oryzabase Gene Symbol Synonym(s)=OsPSK3%2C GREP2%2C OMT9%2C OsPSK5%2C PSK5;Oryzabase Gene Name Synonym(s)=phytosulfokine 3%2C Oryza miR164-targeted gene 9;Note=Phytosulphokine precursor%2C osa-miR164c target gene%2C Regulation of seed vigor;Transcript_evidence=AK059860,AK101186;ORF_evidence=O81277;GO=Biological Process: cell population proliferation (GO:0008283),Molecular Function: growth factor activity (GO:0008083),Cellular Component: extracellular region (GO:0005576);InterPro=Phytosulfokine (IPR009438);NIAS_FLcDNA=006-207-C02,J033030B21;Manual Curation=September 20%2C 2019;Literature_PMID=30791202;Oryzabase=14419;TENOR=Os12t0147800-01
Chr12	irgsp1_rep	five_prime_UTR	2338072	2338231	.	+	.	Parent=Os12t0147800-01
Chr12	irgsp1_rep	CDS	2338232	2338411	.	+	0	Parent=Os12t0147800-01
Chr12	irgsp1_rep	CDS	2338527	2338655	.	+	0	Parent=Os12t0147800-01
Chr12	irgsp1_rep	three_prime_UTR	2338656	2339170	.	+	.	Parent=Os12t0147800-01
Chr12	irgsp1_rep	mRNA	2372976	2382829	.	-	.	ID=Os12t0148400-01;Name=Os12t0148400-01;Locus_id=Os12g0148400;Note=Similar to HEAT repeat family protein%2C expressed.;Transcript_evidence=AK099638 (DDBJ%2C Best hit);ORF_evidence=Q2RAU4 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-type fold (IPR016024),Proteasome stabiliser ECM29 (IPR024372);NIAS_FLcDNA=J013059N04;TENOR=Os12t0148400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	2382792	2382829	.	-	.	Parent=Os12t0148400-01
Chr12	irgsp1_rep	CDS	2382594	2382791	.	-	0	Parent=Os12t0148400-01
Chr12	irgsp1_rep	CDS	2382009	2382170	.	-	0	Parent=Os12t0148400-01
Chr12	irgsp1_rep	CDS	2381827	2381916	.	-	0	Parent=Os12t0148400-01
Chr12	irgsp1_rep	CDS	2381221	2381357	.	-	0	Parent=Os12t0148400-01
Chr12	irgsp1_rep	CDS	2381050	2381140	.	-	1	Parent=Os12t0148400-01
Chr12	irgsp1_rep	CDS	2380798	2380880	.	-	0	Parent=Os12t0148400-01
Chr12	irgsp1_rep	CDS	2380608	2380714	.	-	1	Parent=Os12t0148400-01
Chr12	irgsp1_rep	CDS	2379769	2379921	.	-	2	Parent=Os12t0148400-01
Chr12	irgsp1_rep	CDS	2378818	2378882	.	-	2	Parent=Os12t0148400-01
Chr12	irgsp1_rep	CDS	2378554	2378641	.	-	0	Parent=Os12t0148400-01
Chr12	irgsp1_rep	CDS	2378325	2378403	.	-	2	Parent=Os12t0148400-01
Chr12	irgsp1_rep	CDS	2378125	2378233	.	-	1	Parent=Os12t0148400-01
Chr12	irgsp1_rep	CDS	2376971	2377030	.	-	0	Parent=Os12t0148400-01
Chr12	irgsp1_rep	CDS	2376529	2376647	.	-	0	Parent=Os12t0148400-01
Chr12	irgsp1_rep	CDS	2376030	2376405	.	-	1	Parent=Os12t0148400-01
Chr12	irgsp1_rep	CDS	2375851	2375938	.	-	0	Parent=Os12t0148400-01
Chr12	irgsp1_rep	CDS	2375498	2375766	.	-	2	Parent=Os12t0148400-01
Chr12	irgsp1_rep	CDS	2372976	2373350	.	-	0	Parent=Os12t0148400-01
Chr12	irgsp1_rep	mRNA	2386716	2387272	.	-	.	ID=Os12t0148500-01;Name=Os12t0148500-01;Locus_id=Os12g0148500;Note=Non-protein coding transcript.;Transcript_evidence=AK062437 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-103-A06;TENOR=Os12t0148500-01
Chr12	irgsp1_rep	exon	2386716	2387272	.	-	.	Parent=Os12t0148500-01
Chr12	irgsp1_rep	mRNA	2389854	2395274	.	+	.	ID=Os12t0148600-01;Name=Os12t0148600-01;Locus_id=Os12g0148600;Note=Conserved hypothetical protein.;Transcript_evidence=AK109690 (DDBJ%2C Best hit);ORF_evidence=B9GBW5 (UniProt);NIAS_FLcDNA=002-145-E05;TENOR=Os12t0148600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	2389854	2389988	.	+	.	Parent=Os12t0148600-01
Chr12	irgsp1_rep	CDS	2389989	2390119	.	+	0	Parent=Os12t0148600-01
Chr12	irgsp1_rep	CDS	2390234	2390413	.	+	1	Parent=Os12t0148600-01
Chr12	irgsp1_rep	CDS	2391172	2391282	.	+	1	Parent=Os12t0148600-01
Chr12	irgsp1_rep	CDS	2392231	2392350	.	+	1	Parent=Os12t0148600-01
Chr12	irgsp1_rep	CDS	2392764	2392872	.	+	1	Parent=Os12t0148600-01
Chr12	irgsp1_rep	three_prime_UTR	2392873	2392978	.	+	.	Parent=Os12t0148600-01
Chr12	irgsp1_rep	three_prime_UTR	2393185	2393359	.	+	.	Parent=Os12t0148600-01
Chr12	irgsp1_rep	three_prime_UTR	2393433	2393634	.	+	.	Parent=Os12t0148600-01
Chr12	irgsp1_rep	three_prime_UTR	2394848	2395274	.	+	.	Parent=Os12t0148600-01
Chr12	irgsp1_rep	mRNA	2395992	2397707	.	-	.	ID=Os12t0148700-01;Name=Os12t0148700-01;Locus_id=Os12g0148700;Note=Adipose-regulatory protein%2C Seipin domain containing protein.;Transcript_evidence=AK107332 (DDBJ%2C Best hit);ORF_evidence=B8BM24 (UniProt);InterPro=Adipose-regulatory protein%2C Seipin (IPR009617);NIAS_FLcDNA=002-126-F05;Expression=AK107332;TENOR=Os12t0148700-01;KEGG=Os12t0148700-01
Chr12	irgsp1_rep	five_prime_UTR	2397684	2397707	.	-	.	Parent=Os12t0148700-01
Chr12	irgsp1_rep	CDS	2397102	2397683	.	-	0	Parent=Os12t0148700-01
Chr12	irgsp1_rep	CDS	2396064	2396711	.	-	0	Parent=Os12t0148700-01
Chr12	irgsp1_rep	three_prime_UTR	2395992	2396063	.	-	.	Parent=Os12t0148700-01
Chr12	irgsp1_rep	mRNA	2417956	2419337	.	+	.	ID=Os12t0149000-01;Name=Os12t0149000-01;Locus_id=Os12g0149000;Note=Protein of unknown function DUF868%2C plant domain containing protein.;Transcript_evidence=AK108734 (DDBJ%2C Best hit);ORF_evidence=A2ZI30 (UniProt);InterPro=Protein of unknown function DUF868%2C plant (IPR008586);NIAS_FLcDNA=002-150-D06;TENOR=Os12t0149000-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	2417956	2418097	.	+	.	Parent=Os12t0149000-01
Chr12	irgsp1_rep	CDS	2418098	2419084	.	+	0	Parent=Os12t0149000-01
Chr12	irgsp1_rep	three_prime_UTR	2419085	2419337	.	+	.	Parent=Os12t0149000-01
Chr12	irgsp1_rep	mRNA	2419992	2420532	.	+	.	ID=Os12t0149050-00;Name=Os12t0149050-00;Locus_id=Os12g0149050;Note=Non-protein coding transcript.;Transcript_evidence=CU406022 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os12t0149050-00
Chr12	irgsp1_rep	exon	2419992	2420532	.	+	.	Parent=Os12t0149050-00
Chr12	irgsp1_rep	mRNA	2427464	2427880	.	-	.	ID=Os12t0149100-01;Name=Os12t0149100-01;Locus_id=Os12g0149100;Note=Similar to Zinc finger%2C C3HC4 type family protein%2C expressed.;Transcript_evidence=AK062909 (DDBJ%2C Best hit);ORF_evidence=Q2QXP1 (UniProt);NIAS_FLcDNA=001-108-G02;Expression=AK062909;TENOR=Os12t0149100-01;KEGG=Os12t0149100-01
Chr12	irgsp1_rep	five_prime_UTR	2427879	2427880	.	-	.	Parent=Os12t0149100-01
Chr12	irgsp1_rep	CDS	2427717	2427878	.	-	0	Parent=Os12t0149100-01
Chr12	irgsp1_rep	three_prime_UTR	2427464	2427716	.	-	.	Parent=Os12t0149100-01
Chr12	irgsp1_rep	mRNA	2433326	2434865	.	-	.	ID=Os12t0149300-01;Name=Os12t0149300-01;Locus_id=Os12g0149300;Oryzabase Gene Symbol Synonym(s)=OsGT3;Oryzabase Gene Name Synonym(s)=glycosyltransferase 3;Note=Similar to galactosyl transferase GMA12/MNN10 family protein.;Transcript_evidence=AK110842 (DDBJ%2C Best hit);ORF_evidence=XP_002887538.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=Galactosyl transferase (IPR008630);NIAS_FLcDNA=002-172-B07;Oryzabase=18103;TENOR=Os12t0149300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	2434825	2434865	.	-	.	Parent=Os12t0149300-01
Chr12	irgsp1_rep	CDS	2433424	2434824	.	-	0	Parent=Os12t0149300-01
Chr12	irgsp1_rep	three_prime_UTR	2433326	2433423	.	-	.	Parent=Os12t0149300-01
Chr12	irgsp1_rep	mRNA	2441463	2446063	.	+	.	ID=Os12t0149700-01;Name=Os12t0149700-01;Locus_id=Os12g0149700;Note=Similar to Protein kinase KIPK.;Transcript_evidence=AK122055 (DDBJ%2C Best hit);ORF_evidence=Q5I6E9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033114K20;Expression=AK122055;TENOR=Os12t0149700-01;KEGG=Os12t0149700-01 (EC:2.7.11.13)
Chr12	irgsp1_rep	CDS	2441463	2441611	.	+	0	Parent=Os12t0149700-01
Chr12	irgsp1_rep	CDS	2444669	2445536	.	+	1	Parent=Os12t0149700-01
Chr12	irgsp1_rep	three_prime_UTR	2445537	2446063	.	+	.	Parent=Os12t0149700-01
Chr12	irgsp1_rep	mRNA	2444667	2445542	.	-	.	ID=Os12t0149750-00;Name=Os12t0149750-00;Locus_id=Os12g0149750;Note=Hypothetical protein.;Transcript_evidence=EU943630 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0149750-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	2444970	2445542	.	-	.	Parent=Os12t0149750-00
Chr12	irgsp1_rep	CDS	2444667	2444969	.	-	0	Parent=Os12t0149750-00
Chr12	irgsp1_rep	mRNA	2449184	2451494	.	+	.	ID=Os12t0149800-01;Name=Os12t0149800-01;Locus_id=Os12g0149800;Oryzabase Gene Name Synonym(s)=G10 protein;Note=Similar to G10.;Transcript_evidence=AK103299 (DDBJ%2C Best hit);ORF_evidence=NP_001148940.1 (RefSeq);GO=Cellular Component: nucleus (GO:0005634);InterPro=G10 protein (IPR001748),BUD31/G10-related%2C conserved site (IPR018230);NIAS_FLcDNA=J033125C05;Oryzabase=17620;Expression=AK103299;TENOR=Os12t0149800-01;KEGG=Os12t0149800-01
Chr12	irgsp1_rep	five_prime_UTR	2449184	2449270	.	+	.	Parent=Os12t0149800-01
Chr12	irgsp1_rep	five_prime_UTR	2450235	2450248	.	+	.	Parent=Os12t0149800-01
Chr12	irgsp1_rep	CDS	2450249	2450342	.	+	0	Parent=Os12t0149800-01
Chr12	irgsp1_rep	CDS	2450431	2450618	.	+	2	Parent=Os12t0149800-01
Chr12	irgsp1_rep	CDS	2451154	2451309	.	+	0	Parent=Os12t0149800-01
Chr12	irgsp1_rep	three_prime_UTR	2451310	2451494	.	+	.	Parent=Os12t0149800-01
Chr12	irgsp1_rep	mRNA	2451806	2455614	.	-	.	ID=Os12t0149900-01;Name=Os12t0149900-01;Locus_id=Os12g0149900;Note=IQ calmodulin-binding region domain containing protein.;Transcript_evidence=AK072203 (DDBJ%2C Best hit);ORF_evidence=B6SL12 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);NIAS_FLcDNA=J013162P21;TENOR=Os12t0149900-01
Chr12	irgsp1_rep	five_prime_UTR	2455413	2455614	.	-	.	Parent=Os12t0149900-01
Chr12	irgsp1_rep	CDS	2455219	2455412	.	-	0	Parent=Os12t0149900-01
Chr12	irgsp1_rep	CDS	2454912	2455026	.	-	1	Parent=Os12t0149900-01
Chr12	irgsp1_rep	CDS	2454648	2454713	.	-	0	Parent=Os12t0149900-01
Chr12	irgsp1_rep	CDS	2454288	2454376	.	-	0	Parent=Os12t0149900-01
Chr12	irgsp1_rep	CDS	2454013	2454100	.	-	1	Parent=Os12t0149900-01
Chr12	irgsp1_rep	CDS	2453393	2453539	.	-	0	Parent=Os12t0149900-01
Chr12	irgsp1_rep	CDS	2453187	2453279	.	-	0	Parent=Os12t0149900-01
Chr12	irgsp1_rep	CDS	2452641	2452742	.	-	0	Parent=Os12t0149900-01
Chr12	irgsp1_rep	CDS	2452012	2452551	.	-	0	Parent=Os12t0149900-01
Chr12	irgsp1_rep	three_prime_UTR	2451806	2452011	.	-	.	Parent=Os12t0149900-01
Chr12	irgsp1_rep	mRNA	2451806	2455457	.	-	.	ID=Os12t0149900-02;Name=Os12t0149900-02;Locus_id=Os12g0149900;Note=IQ calmodulin-binding region domain containing protein.;Transcript_evidence=AK102297 (DDBJ%2C Best hit),AK060888 (DDBJ%2C Best hit);ORF_evidence=B6SL12 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);NIAS_FLcDNA=J033089L12,001-035-B10;Expression=AK060888;TENOR=Os12t0149900-02;KEGG=Os12t0149900-02;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	2455413	2455457	.	-	.	Parent=Os12t0149900-02
Chr12	irgsp1_rep	CDS	2455219	2455412	.	-	0	Parent=Os12t0149900-02
Chr12	irgsp1_rep	CDS	2454912	2455026	.	-	1	Parent=Os12t0149900-02
Chr12	irgsp1_rep	CDS	2454648	2454713	.	-	0	Parent=Os12t0149900-02
Chr12	irgsp1_rep	CDS	2454288	2454376	.	-	0	Parent=Os12t0149900-02
Chr12	irgsp1_rep	CDS	2454013	2454100	.	-	1	Parent=Os12t0149900-02
Chr12	irgsp1_rep	CDS	2453393	2453539	.	-	0	Parent=Os12t0149900-02
Chr12	irgsp1_rep	CDS	2453187	2453279	.	-	0	Parent=Os12t0149900-02
Chr12	irgsp1_rep	CDS	2452641	2452742	.	-	0	Parent=Os12t0149900-02
Chr12	irgsp1_rep	CDS	2452012	2452551	.	-	0	Parent=Os12t0149900-02
Chr12	irgsp1_rep	three_prime_UTR	2451806	2452011	.	-	.	Parent=Os12t0149900-02
Chr12	irgsp1_rep	mRNA	2460638	2461309	.	-	.	ID=Os12t0150100-01;Name=Os12t0150100-01;Locus_id=Os12g0150100;Oryzabase Gene Name Synonym(s)=Ribosomal protein L26;Note=Similar to 60S ribosomal protein L26A.;Transcript_evidence=AK105075 (DDBJ%2C Best hit);ORF_evidence=B6TPG2 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: large ribosomal subunit (GO:0015934),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L26/L24P%2C eukaryotic/archaeal (IPR005756),KOW (IPR005824),Ribosomal protein L24/L26%2C conserved site (IPR005825),Translation protein SH3-like (IPR008991),Ribosomal protein L24%2C SH3-like (IPR014723);NIAS_FLcDNA=001-045-F01;Oryzabase=17670;Expression=AK105075;TENOR=Os12t0150100-01;KEGG=Os12t0150100-01
Chr12	irgsp1_rep	five_prime_UTR	2461257	2461309	.	-	.	Parent=Os12t0150100-01
Chr12	irgsp1_rep	CDS	2460804	2461256	.	-	0	Parent=Os12t0150100-01
Chr12	irgsp1_rep	three_prime_UTR	2460638	2460803	.	-	.	Parent=Os12t0150100-01
Chr12	irgsp1_rep	mRNA	2467929	2469700	.	-	.	ID=Os12t0150200-01;Name=Os12t0150200-01;Locus_id=Os12g0150200;RAP-DB Gene Symbol Synonym(s)=OsCYP450%2C CYP94C2b;RAP-DB Gene Name Synonym(s)=CytoChrome P450 family protein;CGSNL Gene Symbol=CYP94C2B;CGSNL Gene Name=CYTOCHROME P450 94C2B;Oryzabase Gene Symbol Synonym(s)=OsCYP94C2b;Oryzabase Gene Name Synonym(s)=CytoChrome P450 94C2b;Note=CytoChrome P450 enzyme%2C Salt tolerance;Transcript_evidence=AK064287;ORF_evidence=Q2QXN4;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);NIAS_FLcDNA=002-105-H01;Manual Curation=September 7%2C 2015;Literature_PMID=25637374;Oryzabase=12487;TENOR=Os12t0150200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	2469584	2469700	.	-	.	Parent=Os12t0150200-01
Chr12	irgsp1_rep	CDS	2468054	2469583	.	-	0	Parent=Os12t0150200-01
Chr12	irgsp1_rep	three_prime_UTR	2467929	2468053	.	-	.	Parent=Os12t0150200-01
Chr12	irgsp1_rep	mRNA	2506938	2507510	.	+	.	ID=Os12t0150500-00;Name=Os12t0150500-00;Locus_id=Os12g0150500;CGSNL Gene Symbol=ENODL23;CGSNL Gene Name=EARLY NODULIN LIKE PROTEIN 23;Oryzabase Gene Symbol Synonym(s)=OsENODL23;Oryzabase Gene Name Synonym(s)=early nodulin-like protein 23;Note=Plastocyanin-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001066167.2 (RefSeq);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);Oryzabase=9748;TENOR=Os12t0150500-00
Chr12	irgsp1_rep	CDS	2506938	2507510	.	+	0	Parent=Os12t0150500-00
Chr12	irgsp1_rep	mRNA	2521699	2523450	.	-	.	ID=Os12t0150700-00;Name=Os12t0150700-00;Locus_id=Os12g0150700;CGSNL Gene Symbol=PAP21C;CGSNL Gene Name=PURPLE ACID PHOSPHATASE 21C;Oryzabase Gene Symbol Synonym(s)=OsPAP21c;Oryzabase Gene Name Synonym(s)=purple acid phosphatase 21c;Note=Similar to Ser/Thr protein phosphatase family protein%2C expressed.;Transcript_evidence=AK249360 (DDBJ);ORF_evidence=Q53Q74 (UniProt);GO=Molecular Function: acid phosphatase activity (GO:0003993),Molecular Function: metal ion binding (GO:0046872);InterPro=Purple acid phosphatase-like%2C N-terminal (IPR008963),Purple acid phosphatase%2C N-terminal (IPR015914),Alkaline phosphatase D-related (IPR018946);Oryzabase=11392;TENOR=Os12t0150700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	2522776	2523450	.	-	0	Parent=Os12t0150700-00
Chr12	irgsp1_rep	CDS	2522359	2522723	.	-	0	Parent=Os12t0150700-00
Chr12	irgsp1_rep	CDS	2521969	2522057	.	-	1	Parent=Os12t0150700-00
Chr12	irgsp1_rep	CDS	2521827	2521876	.	-	2	Parent=Os12t0150700-00
Chr12	irgsp1_rep	three_prime_UTR	2521699	2521826	.	-	.	Parent=Os12t0150700-00
Chr12	irgsp1_rep	mRNA	2532402	2533609	.	+	.	ID=Os12t0150901-00;Name=Os12t0150901-00;Locus_id=Os12g0150901;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0051a13 (Wheat FLcDNA);ORF_evidence=Q2QXM5 (UniProt);TENOR=Os12t0150901-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	2532402	2532872	.	+	.	Parent=Os12t0150901-00
Chr12	irgsp1_rep	CDS	2532873	2533325	.	+	0	Parent=Os12t0150901-00
Chr12	irgsp1_rep	three_prime_UTR	2533326	2533609	.	+	.	Parent=Os12t0150901-00
Chr12	irgsp1_rep	mRNA	2535927	2538830	.	+	.	ID=Os12t0151000-01;Name=Os12t0151000-01;Locus_id=Os12g0151000;CGSNL Gene Symbol=PAP20B;CGSNL Gene Name=PURPLE ACID PHOSPHATASE 20B;Oryzabase Gene Symbol Synonym(s)=OsPAP20b;Oryzabase Gene Name Synonym(s)=purple acid phosphatase 20b;Note=Similar to Purple acid phosphatase.;Transcript_evidence=AK107301 (DDBJ%2C Best hit);ORF_evidence=Q53Q74 (UniProt);GO=Molecular Function: acid phosphatase activity (GO:0003993),Molecular Function: protein binding (GO:0005515),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: metal ion binding (GO:0046872);InterPro=Fibronectin%2C type III (IPR003961),Metallophosphoesterase domain (IPR004843),Purple acid phosphatase-like%2C N-terminal (IPR008963),Purple acid phosphatase%2C N-terminal (IPR015914);NIAS_FLcDNA=002-126-C09;Oryzabase=11389;Expression=AK107301;TENOR=Os12t0151000-01;KEGG=Os12t0151000-01
Chr12	irgsp1_rep	five_prime_UTR	2535927	2535992	.	+	.	Parent=Os12t0151000-01
Chr12	irgsp1_rep	CDS	2535993	2536163	.	+	0	Parent=Os12t0151000-01
Chr12	irgsp1_rep	CDS	2537561	2538727	.	+	0	Parent=Os12t0151000-01
Chr12	irgsp1_rep	three_prime_UTR	2538728	2538830	.	+	.	Parent=Os12t0151000-01
Chr12	irgsp1_rep	mRNA	2546424	2547898	.	+	.	ID=Os12t0151500-01;Name=Os12t0151500-01;Locus_id=Os12g0151500;Note=Similar to Alpha-2%2C8-sialyltransferase 8B (EC 2.4.99.-) (ST8Sia II) (Sialyltransferase X) (STX).;Transcript_evidence=AK105865 (DDBJ%2C Best hit),AK058389 (DDBJ%2C Best hit);ORF_evidence=Q4JEY8 (UniProt);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: integral to Golgi membrane (GO:0030173),Molecular Function: sialyltransferase activity (GO:0008373);InterPro=Glycosyl transferase%2C family 29 (IPR001675),Sialyltransferase (IPR012163);NIAS_FLcDNA=001-204-A06,001-015-A04;Expression=AK105865;TENOR=Os12t0151500-01;KEGG=Os12t0151500-01
Chr12	irgsp1_rep	five_prime_UTR	2546424	2546460	.	+	.	Parent=Os12t0151500-01
Chr12	irgsp1_rep	CDS	2546461	2547651	.	+	0	Parent=Os12t0151500-01
Chr12	irgsp1_rep	three_prime_UTR	2547652	2547898	.	+	.	Parent=Os12t0151500-01
Chr12	irgsp1_rep	mRNA	2551166	2551439	.	+	.	ID=Os12t0151600-00;Name=Os12t0151600-00;Locus_id=Os12g0151600;Note=Hypothetical conserved gene.;Transcript_evidence=BT061672 (DDBJ);ORF_evidence=NP_190845.1 (RefSeq);TENOR=Os12t0151600-00;KEGG=Os12t0151600-00
Chr12	irgsp1_rep	five_prime_UTR	2551166	2551192	.	+	.	Parent=Os12t0151600-00
Chr12	irgsp1_rep	CDS	2551193	2551438	.	+	0	Parent=Os12t0151600-00
Chr12	irgsp1_rep	three_prime_UTR	2551439	2551439	.	+	.	Parent=Os12t0151600-00
Chr12	irgsp1_rep	mRNA	2562787	2563380	.	+	.	ID=Os12t0151750-00;Name=Os12t0151750-00;Locus_id=Os12g0151750;Note=Conserved hypothetical protein.;Transcript_evidence=EU958374 (DDBJ);ORF_evidence=Q2QXM0 (UniProt);TENOR=Os12t0151750-00
Chr12	irgsp1_rep	CDS	2562787	2563380	.	+	0	Parent=Os12t0151750-00
Chr12	irgsp1_rep	mRNA	2564348	2569648	.	+	.	ID=Os12t0151900-01;Name=Os12t0151900-01;Locus_id=Os12g0151900;Note=Hypothetical protein.;Transcript_evidence=AK111756 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023055B06;Expression=AK111756;TENOR=Os12t0151900-01;KEGG=Os12t0151900-01
Chr12	irgsp1_rep	five_prime_UTR	2564348	2564475	.	+	.	Parent=Os12t0151900-01
Chr12	irgsp1_rep	five_prime_UTR	2565120	2565243	.	+	.	Parent=Os12t0151900-01
Chr12	irgsp1_rep	five_prime_UTR	2565356	2565445	.	+	.	Parent=Os12t0151900-01
Chr12	irgsp1_rep	CDS	2565446	2565820	.	+	0	Parent=Os12t0151900-01
Chr12	irgsp1_rep	CDS	2566367	2566477	.	+	0	Parent=Os12t0151900-01
Chr12	irgsp1_rep	CDS	2567715	2567787	.	+	0	Parent=Os12t0151900-01
Chr12	irgsp1_rep	CDS	2568312	2568316	.	+	2	Parent=Os12t0151900-01
Chr12	irgsp1_rep	three_prime_UTR	2568317	2568436	.	+	.	Parent=Os12t0151900-01
Chr12	irgsp1_rep	three_prime_UTR	2568548	2568626	.	+	.	Parent=Os12t0151900-01
Chr12	irgsp1_rep	three_prime_UTR	2569330	2569648	.	+	.	Parent=Os12t0151900-01
Chr12	irgsp1_rep	mRNA	2565213	2566562	.	-	.	ID=Os12t0152000-00;Name=Os12t0152000-00;Locus_id=Os12g0152000;CGSNL Gene Symbol=RCN3;CGSNL Gene Name=RICE TERMINAL FLOWER 1/CENTRORADIALIS HOMOLOG 3;Oryzabase Gene Symbol Synonym(s)=Rcn3%2C OsRCN3%2C RCN3/FDR1%2C FDR1%2C Fdr1%2C OsFDR1;Oryzabase Gene Name Synonym(s)=RICE CENTRORADIALIS 3;Note=Similar to Terminal flower 1-like protein.;Transcript_evidence=AF159883 (DDBJ%2C Best hit);ORF_evidence=Q9XGS5 (UniProt);InterPro=Phosphatidylethanolamine-binding%2C conserved site (IPR001858),Phosphatidylethanolamine-binding protein PEBP (IPR008914);Oryzabase=11879;Expression=AF159883;TENOR=Os12t0152000-00;KEGG=Os12t0152000-00
Chr12	irgsp1_rep	five_prime_UTR	2566456	2566562	.	-	.	Parent=Os12t0152000-00
Chr12	irgsp1_rep	CDS	2566255	2566455	.	-	0	Parent=Os12t0152000-00
Chr12	irgsp1_rep	CDS	2566088	2566149	.	-	0	Parent=Os12t0152000-00
Chr12	irgsp1_rep	CDS	2565797	2565837	.	-	1	Parent=Os12t0152000-00
Chr12	irgsp1_rep	CDS	2565491	2565708	.	-	2	Parent=Os12t0152000-00
Chr12	irgsp1_rep	three_prime_UTR	2565213	2565490	.	-	.	Parent=Os12t0152000-00
Chr12	irgsp1_rep	mRNA	2571700	2573888	.	+	.	ID=Os12t0152100-01;Name=Os12t0152100-01;Locus_id=Os12g0152100;Note=Alpha/beta hydrolase fold-1 domain containing protein.;Transcript_evidence=AK070021 (DDBJ%2C Best hit);ORF_evidence=A6N1T8 (UniProt);NIAS_FLcDNA=J023038B22;Expression=AK070021;TENOR=Os12t0152100-01;KEGG=Os12t0152100-01
Chr12	irgsp1_rep	five_prime_UTR	2571700	2571756	.	+	.	Parent=Os12t0152100-01
Chr12	irgsp1_rep	CDS	2571757	2572011	.	+	0	Parent=Os12t0152100-01
Chr12	irgsp1_rep	CDS	2572136	2572347	.	+	0	Parent=Os12t0152100-01
Chr12	irgsp1_rep	CDS	2572911	2573175	.	+	1	Parent=Os12t0152100-01
Chr12	irgsp1_rep	CDS	2573492	2573791	.	+	0	Parent=Os12t0152100-01
Chr12	irgsp1_rep	three_prime_UTR	2573792	2573888	.	+	.	Parent=Os12t0152100-01
Chr12	irgsp1_rep	mRNA	2574325	2575584	.	-	.	ID=Os12t0152200-00;Name=Os12t0152200-00;Locus_id=Os12g0152200;Oryzabase Gene Symbol Synonym(s)=OsFbox642%2C Os_F0213;Oryzabase Gene Name Synonym(s)=F-box protein 642;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001066174.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Protein of unknown function DUF295 (IPR005174),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17403;TENOR=Os12t0152200-00;KEGG=Os12t0152200-00
Chr12	irgsp1_rep	CDS	2574325	2575584	.	-	0	Parent=Os12t0152200-00
Chr12	irgsp1_rep	mRNA	2588267	2589973	.	+	.	ID=Os12t0152500-00;Name=Os12t0152500-00;Locus_id=Os12g0152500;Note=Hypothetical conserved gene.;Transcript_evidence=BT039089 (DDBJ);ORF_evidence=A2ZI44 (UniProt);TENOR=Os12t0152500-00;KEGG=Os12t0152500-00
Chr12	irgsp1_rep	five_prime_UTR	2588267	2588598	.	+	.	Parent=Os12t0152500-00
Chr12	irgsp1_rep	CDS	2588599	2588655	.	+	0	Parent=Os12t0152500-00
Chr12	irgsp1_rep	CDS	2588794	2589002	.	+	0	Parent=Os12t0152500-00
Chr12	irgsp1_rep	CDS	2589092	2589305	.	+	1	Parent=Os12t0152500-00
Chr12	irgsp1_rep	three_prime_UTR	2589306	2589357	.	+	.	Parent=Os12t0152500-00
Chr12	irgsp1_rep	three_prime_UTR	2589591	2589973	.	+	.	Parent=Os12t0152500-00
Chr12	irgsp1_rep	mRNA	2592552	2594898	.	-	.	ID=Os12t0152600-01;Name=Os12t0152600-01;Locus_id=Os12g0152600;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK288612 (DDBJ%2C Best hit);ORF_evidence=NP_001066176.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J090053J15;TENOR=Os12t0152600-01;KEGG=Os12t0152600-01
Chr12	irgsp1_rep	five_prime_UTR	2594790	2594898	.	-	.	Parent=Os12t0152600-01
Chr12	irgsp1_rep	CDS	2592639	2594789	.	-	0	Parent=Os12t0152600-01
Chr12	irgsp1_rep	three_prime_UTR	2592552	2592638	.	-	.	Parent=Os12t0152600-01
Chr12	irgsp1_rep	mRNA	2595563	2600056	.	-	.	ID=Os12t0152700-01;Name=Os12t0152700-01;Locus_id=Os12g0152700;Note=Amino acid-binding ACT domain containing protein.;Transcript_evidence=AK099473 (DDBJ%2C Best hit);ORF_evidence=NP_001151043.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: amino acid binding (GO:0016597);InterPro=Amino acid-binding ACT (IPR002912);NIAS_FLcDNA=J013024D11;TENOR=Os12t0152700-01
Chr12	irgsp1_rep	five_prime_UTR	2599966	2600056	.	-	.	Parent=Os12t0152700-01
Chr12	irgsp1_rep	CDS	2599820	2599965	.	-	0	Parent=Os12t0152700-01
Chr12	irgsp1_rep	CDS	2598592	2598643	.	-	1	Parent=Os12t0152700-01
Chr12	irgsp1_rep	CDS	2598035	2598148	.	-	0	Parent=Os12t0152700-01
Chr12	irgsp1_rep	CDS	2597820	2597914	.	-	0	Parent=Os12t0152700-01
Chr12	irgsp1_rep	CDS	2597494	2597572	.	-	1	Parent=Os12t0152700-01
Chr12	irgsp1_rep	CDS	2597306	2597365	.	-	0	Parent=Os12t0152700-01
Chr12	irgsp1_rep	CDS	2597049	2597104	.	-	0	Parent=Os12t0152700-01
Chr12	irgsp1_rep	CDS	2596183	2596288	.	-	1	Parent=Os12t0152700-01
Chr12	irgsp1_rep	CDS	2596029	2596097	.	-	0	Parent=Os12t0152700-01
Chr12	irgsp1_rep	CDS	2595873	2595935	.	-	0	Parent=Os12t0152700-01
Chr12	irgsp1_rep	three_prime_UTR	2595563	2595872	.	-	.	Parent=Os12t0152700-01
Chr12	irgsp1_rep	mRNA	2595556	2599950	.	-	.	ID=Os12t0152700-02;Name=Os12t0152700-02;Locus_id=Os12g0152700;Note=Similar to ACT domain containing protein.;Transcript_evidence=AK060070 (DDBJ%2C Best hit);ORF_evidence=NP_001151043.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: amino acid binding (GO:0016597);InterPro=Amino acid-binding ACT (IPR002912);NIAS_FLcDNA=006-306-A05;TENOR=Os12t0152700-02
Chr12	irgsp1_rep	CDS	2599820	2599950	.	-	0	Parent=Os12t0152700-02
Chr12	irgsp1_rep	CDS	2598592	2598643	.	-	1	Parent=Os12t0152700-02
Chr12	irgsp1_rep	CDS	2598035	2598148	.	-	0	Parent=Os12t0152700-02
Chr12	irgsp1_rep	CDS	2597820	2597914	.	-	0	Parent=Os12t0152700-02
Chr12	irgsp1_rep	CDS	2597494	2597572	.	-	1	Parent=Os12t0152700-02
Chr12	irgsp1_rep	CDS	2597306	2597365	.	-	0	Parent=Os12t0152700-02
Chr12	irgsp1_rep	CDS	2597049	2597104	.	-	0	Parent=Os12t0152700-02
Chr12	irgsp1_rep	CDS	2596183	2596288	.	-	1	Parent=Os12t0152700-02
Chr12	irgsp1_rep	CDS	2596029	2596097	.	-	0	Parent=Os12t0152700-02
Chr12	irgsp1_rep	CDS	2595873	2595935	.	-	0	Parent=Os12t0152700-02
Chr12	irgsp1_rep	three_prime_UTR	2595556	2595872	.	-	.	Parent=Os12t0152700-02
Chr12	irgsp1_rep	mRNA	2600996	2602026	.	-	.	ID=Os12t0152750-00;Name=Os12t0152750-00;Locus_id=Os12g0152750;Note=Hypothetical gene.;Transcript_evidence=CU406272 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os12t0152750-00;KEGG=Os12t0152750-00
Chr12	irgsp1_rep	five_prime_UTR	2601944	2602026	.	-	.	Parent=Os12t0152750-00
Chr12	irgsp1_rep	CDS	2601695	2601943	.	-	0	Parent=Os12t0152750-00
Chr12	irgsp1_rep	three_prime_UTR	2600996	2601694	.	-	.	Parent=Os12t0152750-00
Chr12	irgsp1_rep	mRNA	2602352	2607722	.	+	.	ID=Os12t0152800-01;Name=Os12t0152800-01;Locus_id=Os12g0152800;CGSNL Gene Symbol=STR19;CGSNL Gene Name=SULFURTRANSFERASE 19;Oryzabase Gene Symbol Synonym(s)=OsStr19%2C OsPP126;Oryzabase Gene Name Synonym(s)=Sulfurtransferase 19%2C Protein phosphatase 126;Note=Rhodanese-like domain containing protein.;Transcript_evidence=AK073401 (DDBJ%2C Best hit);ORF_evidence=NP_001152230.1 (RefSeq);GO=Biological Process: protein dephosphorylation (GO:0006470),Biological Process: dephosphorylation (GO:0016311),Molecular Function: protein tyrosine phosphatase activity (GO:0004725),Molecular Function: protein tyrosine/serine/threonine phosphatase activity (GO:0008138),Molecular Function: phosphatase activity (GO:0016791);InterPro=Dual specificity phosphatase%2C catalytic domain (IPR000340),Protein-tyrosine/Dual-specificity phosphatase (IPR000387),Rhodanese-like (IPR001763),Protein-tyrosine phosphatase%2C active site (IPR016130);NIAS_FLcDNA=J033044P20;Oryzabase=12069;Expression=AK073401;TENOR=Os12t0152800-01;KEGG=Os12t0152800-01
Chr12	irgsp1_rep	five_prime_UTR	2602352	2602596	.	+	.	Parent=Os12t0152800-01
Chr12	irgsp1_rep	five_prime_UTR	2604251	2604300	.	+	.	Parent=Os12t0152800-01
Chr12	irgsp1_rep	CDS	2604301	2604841	.	+	0	Parent=Os12t0152800-01
Chr12	irgsp1_rep	CDS	2604998	2605176	.	+	2	Parent=Os12t0152800-01
Chr12	irgsp1_rep	three_prime_UTR	2605177	2605178	.	+	.	Parent=Os12t0152800-01
Chr12	irgsp1_rep	three_prime_UTR	2605898	2607722	.	+	.	Parent=Os12t0152800-01
Chr12	irgsp1_rep	mRNA	2602458	2606487	.	+	.	ID=Os12t0152800-02;Name=Os12t0152800-02;Locus_id=Os12g0152800;CGSNL Gene Symbol=STR19;CGSNL Gene Name=SULFURTRANSFERASE 19;Oryzabase Gene Symbol Synonym(s)=OsStr19%2C OsPP126;Oryzabase Gene Name Synonym(s)=Sulfurtransferase 19%2C Protein phosphatase 126;Note=Rhodanese-like domain containing protein.;Transcript_evidence=AK072885 (DDBJ%2C Best hit);ORF_evidence=NP_001152230.1 (RefSeq);GO=Biological Process: protein dephosphorylation (GO:0006470),Biological Process: dephosphorylation (GO:0016311),Molecular Function: protein tyrosine phosphatase activity (GO:0004725),Molecular Function: protein tyrosine/serine/threonine phosphatase activity (GO:0008138),Molecular Function: phosphatase activity (GO:0016791);InterPro=Dual specificity phosphatase%2C catalytic domain (IPR000340),Protein-tyrosine/Dual-specificity phosphatase (IPR000387),Rhodanese-like (IPR001763),Protein-tyrosine phosphatase%2C active site (IPR016130);NIAS_FLcDNA=J023149P08;Oryzabase=12069;Expression=AK072885;TENOR=Os12t0152800-02;KEGG=Os12t0152800-02
Chr12	irgsp1_rep	five_prime_UTR	2602458	2602596	.	+	.	Parent=Os12t0152800-02
Chr12	irgsp1_rep	five_prime_UTR	2604251	2604300	.	+	.	Parent=Os12t0152800-02
Chr12	irgsp1_rep	CDS	2604301	2604841	.	+	0	Parent=Os12t0152800-02
Chr12	irgsp1_rep	CDS	2604998	2605176	.	+	2	Parent=Os12t0152800-02
Chr12	irgsp1_rep	three_prime_UTR	2605177	2605178	.	+	.	Parent=Os12t0152800-02
Chr12	irgsp1_rep	three_prime_UTR	2605898	2606487	.	+	.	Parent=Os12t0152800-02
Chr12	irgsp1_rep	mRNA	2602466	2607141	.	+	.	ID=Os12t0152800-03;Name=Os12t0152800-03;Locus_id=Os12g0152800;CGSNL Gene Symbol=STR19;CGSNL Gene Name=SULFURTRANSFERASE 19;Oryzabase Gene Symbol Synonym(s)=OsStr19%2C OsPP126;Oryzabase Gene Name Synonym(s)=Sulfurtransferase 19%2C Protein phosphatase 126;Note=Rhodanese-like domain containing protein.;Transcript_evidence=AK071572 (DDBJ%2C Best hit);ORF_evidence=NP_001152230.1 (RefSeq);GO=Biological Process: protein dephosphorylation (GO:0006470),Biological Process: dephosphorylation (GO:0016311),Molecular Function: protein tyrosine phosphatase activity (GO:0004725),Molecular Function: protein tyrosine/serine/threonine phosphatase activity (GO:0008138),Molecular Function: phosphatase activity (GO:0016791);InterPro=Dual specificity phosphatase%2C catalytic domain (IPR000340),Protein-tyrosine/Dual-specificity phosphatase (IPR000387),Rhodanese-like (IPR001763),Protein-tyrosine phosphatase%2C active site (IPR016130);NIAS_FLcDNA=J023105E11;Oryzabase=12069;TENOR=Os12t0152800-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	2602466	2602596	.	+	.	Parent=Os12t0152800-03
Chr12	irgsp1_rep	five_prime_UTR	2604251	2604300	.	+	.	Parent=Os12t0152800-03
Chr12	irgsp1_rep	CDS	2604301	2604841	.	+	0	Parent=Os12t0152800-03
Chr12	irgsp1_rep	CDS	2604998	2605176	.	+	2	Parent=Os12t0152800-03
Chr12	irgsp1_rep	three_prime_UTR	2605177	2605178	.	+	.	Parent=Os12t0152800-03
Chr12	irgsp1_rep	three_prime_UTR	2605898	2606080	.	+	.	Parent=Os12t0152800-03
Chr12	irgsp1_rep	three_prime_UTR	2606653	2607141	.	+	.	Parent=Os12t0152800-03
Chr12	irgsp1_rep	mRNA	2605807	2612489	.	-	.	ID=Os12t0152900-01;Name=Os12t0152900-01;Locus_id=Os12g0152900;CGSNL Gene Symbol=BZIP83;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 83;Oryzabase Gene Symbol Synonym(s)=OsbZIP83%2C TGAL11%2C OsTGAL11;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 83%2C TGA-like protein 11;Note=bZIP transcription factor%2C bZIP-1 domain containing protein.;Transcript_evidence=AK101620 (DDBJ%2C Best hit);ORF_evidence=D3U2G1 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);NIAS_FLcDNA=J033052J02;Oryzabase=10162;Expression=AK101620;TENOR=Os12t0152900-01;KEGG=Os12t0152900-01
Chr12	irgsp1_rep	five_prime_UTR	2612115	2612489	.	-	.	Parent=Os12t0152900-01
Chr12	irgsp1_rep	five_prime_UTR	2611915	2611994	.	-	.	Parent=Os12t0152900-01
Chr12	irgsp1_rep	CDS	2611817	2611914	.	-	0	Parent=Os12t0152900-01
Chr12	irgsp1_rep	CDS	2611283	2611422	.	-	1	Parent=Os12t0152900-01
Chr12	irgsp1_rep	CDS	2610605	2610717	.	-	2	Parent=Os12t0152900-01
Chr12	irgsp1_rep	CDS	2610390	2610527	.	-	0	Parent=Os12t0152900-01
Chr12	irgsp1_rep	CDS	2609222	2609281	.	-	0	Parent=Os12t0152900-01
Chr12	irgsp1_rep	CDS	2608976	2609035	.	-	0	Parent=Os12t0152900-01
Chr12	irgsp1_rep	CDS	2608772	2608849	.	-	0	Parent=Os12t0152900-01
Chr12	irgsp1_rep	CDS	2608641	2608683	.	-	0	Parent=Os12t0152900-01
Chr12	irgsp1_rep	CDS	2608210	2608481	.	-	2	Parent=Os12t0152900-01
Chr12	irgsp1_rep	CDS	2607303	2607545	.	-	0	Parent=Os12t0152900-01
Chr12	irgsp1_rep	CDS	2606724	2606866	.	-	0	Parent=Os12t0152900-01
Chr12	irgsp1_rep	CDS	2606105	2606186	.	-	1	Parent=Os12t0152900-01
Chr12	irgsp1_rep	three_prime_UTR	2605807	2606104	.	-	.	Parent=Os12t0152900-01
Chr12	irgsp1_rep	mRNA	2622160	2623105	.	-	.	ID=Os12t0153200-01;Name=Os12t0153200-01;Locus_id=Os12g0153200;Note=Conserved hypothetical protein.;Transcript_evidence=AK108198 (DDBJ%2C Best hit);ORF_evidence=A2ZI60 (UniProt);NIAS_FLcDNA=002-140-C09;Expression=AK108198;TENOR=Os12t0153200-01;KEGG=Os12t0153200-01
Chr12	irgsp1_rep	five_prime_UTR	2622843	2623105	.	-	.	Parent=Os12t0153200-01
Chr12	irgsp1_rep	CDS	2622453	2622842	.	-	0	Parent=Os12t0153200-01
Chr12	irgsp1_rep	three_prime_UTR	2622160	2622452	.	-	.	Parent=Os12t0153200-01
Chr12	irgsp1_rep	mRNA	2635628	2636887	.	+	.	ID=Os12t0153400-00;Name=Os12t0153400-00;Locus_id=Os12g0153400;Oryzabase Gene Symbol Synonym(s)=OsFbox643;Oryzabase Gene Name Synonym(s)=F-box protein 643;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001066174.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Protein of unknown function DUF295 (IPR005174),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17404;TENOR=Os12t0153400-00;KEGG=Os12t0153400-00
Chr12	irgsp1_rep	CDS	2635628	2636887	.	+	0	Parent=Os12t0153400-00
Chr12	irgsp1_rep	mRNA	2637608	2638272	.	+	.	ID=Os12t0153433-00;Name=Os12t0153433-00;Locus_id=Os12g0153433;Note=Hypothetical gene.;Transcript_evidence=CT835608 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os12t0153433-00;KEGG=Os12t0153433-00
Chr12	irgsp1_rep	five_prime_UTR	2637608	2637726	.	+	.	Parent=Os12t0153433-00
Chr12	irgsp1_rep	CDS	2637727	2638143	.	+	0	Parent=Os12t0153433-00
Chr12	irgsp1_rep	three_prime_UTR	2638144	2638272	.	+	.	Parent=Os12t0153433-00
Chr12	irgsp1_rep	mRNA	2643975	2645314	.	+	.	ID=Os12t0153500-01;Name=Os12t0153500-01;Locus_id=Os12g0153500;CGSNL Gene Symbol=ALPHACA11;CGSNL Gene Name=ALPHA-CARBONIC ANHYDRASE 11;Oryzabase Gene Symbol Synonym(s)=OsalphaCA11%2C alphaCA11;Oryzabase Gene Name Synonym(s)=alpha-carbonic anhydrase 11;Note=Carbonic anhydrase%2C CAH1-like domain containing protein.;Transcript_evidence=AK070276 (DDBJ%2C Best hit);ORF_evidence=A2ZI48 (UniProt);GO=Biological Process: one-carbon metabolic process (GO:0006730),Molecular Function: carbonate dehydratase activity (GO:0004089),Molecular Function: zinc ion binding (GO:0008270);InterPro=Carbonic anhydrase%2C alpha-class%2C catalytic domain (IPR001148),Carbonic anhydrase%2C alpha-class%2C conserved site (IPR018338),Carbonic anhydrase%2C alpha-class (IPR023561);NIAS_FLcDNA=J023047P18;Oryzabase=21654;Expression=AK070276;TENOR=Os12t0153500-01;KEGG=Os12t0153500-01 (EC:4.2.1.1)
Chr12	irgsp1_rep	five_prime_UTR	2643975	2644034	.	+	.	Parent=Os12t0153500-01
Chr12	irgsp1_rep	CDS	2644035	2644101	.	+	0	Parent=Os12t0153500-01
Chr12	irgsp1_rep	CDS	2644187	2644965	.	+	2	Parent=Os12t0153500-01
Chr12	irgsp1_rep	three_prime_UTR	2644966	2645314	.	+	.	Parent=Os12t0153500-01
Chr12	irgsp1_rep	mRNA	2647994	2650362	.	+	.	ID=Os12t0153600-00;Name=Os12t0153600-00;Locus_id=Os12g0153600;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QXK4 (UniProt);TENOR=Os12t0153600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	2647994	2648074	.	+	0	Parent=Os12t0153600-00
Chr12	irgsp1_rep	CDS	2648402	2648503	.	+	0	Parent=Os12t0153600-00
Chr12	irgsp1_rep	CDS	2648739	2648861	.	+	0	Parent=Os12t0153600-00
Chr12	irgsp1_rep	CDS	2649028	2649133	.	+	0	Parent=Os12t0153600-00
Chr12	irgsp1_rep	CDS	2649591	2649793	.	+	2	Parent=Os12t0153600-00
Chr12	irgsp1_rep	CDS	2649818	2649878	.	+	0	Parent=Os12t0153600-00
Chr12	irgsp1_rep	CDS	2649972	2650063	.	+	2	Parent=Os12t0153600-00
Chr12	irgsp1_rep	CDS	2650237	2650362	.	+	0	Parent=Os12t0153600-00
Chr12	irgsp1_rep	mRNA	2650651	2651769	.	-	.	ID=Os12t0153700-00;Name=Os12t0153700-00;Locus_id=Os12g0153700;Note=Peptidase aspartic%2C catalytic domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QXK3 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);TENOR=Os12t0153700-00;KEGG=Os12t0153700-00
Chr12	irgsp1_rep	CDS	2650651	2651769	.	-	0	Parent=Os12t0153700-00
Chr12	irgsp1_rep	mRNA	2659495	2660490	.	+	.	ID=Os12t0153900-00;Name=Os12t0153900-00;Locus_id=Os12g0153900;Note=Conserved hypothetical protein.;Transcript_evidence=BT085388 (DDBJ);ORF_evidence=NP_001066184.1 (RefSeq);TENOR=Os12t0153900-00;KEGG=Os12t0153900-00
Chr12	irgsp1_rep	CDS	2659495	2660259	.	+	0	Parent=Os12t0153900-00
Chr12	irgsp1_rep	three_prime_UTR	2660260	2660490	.	+	.	Parent=Os12t0153900-00
Chr12	irgsp1_rep	mRNA	2661957	2666739	.	-	.	ID=Os12t0154000-01;Name=Os12t0154000-01;Locus_id=Os12g0154000;Note=Protein of unknown function DUF250 domain containing protein.;Transcript_evidence=AK105118 (DDBJ%2C Best hit);ORF_evidence=NP_001150661.1 (RefSeq);InterPro=Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=001-101-A05;Expression=AK105118;TENOR=Os12t0154000-01;KEGG=Os12t0154000-01
Chr12	irgsp1_rep	five_prime_UTR	2666414	2666739	.	-	.	Parent=Os12t0154000-01
Chr12	irgsp1_rep	five_prime_UTR	2666191	2666245	.	-	.	Parent=Os12t0154000-01
Chr12	irgsp1_rep	CDS	2666058	2666190	.	-	0	Parent=Os12t0154000-01
Chr12	irgsp1_rep	CDS	2665307	2665491	.	-	2	Parent=Os12t0154000-01
Chr12	irgsp1_rep	CDS	2665022	2665222	.	-	0	Parent=Os12t0154000-01
Chr12	irgsp1_rep	CDS	2664523	2664684	.	-	0	Parent=Os12t0154000-01
Chr12	irgsp1_rep	CDS	2663685	2663893	.	-	0	Parent=Os12t0154000-01
Chr12	irgsp1_rep	CDS	2663574	2663590	.	-	1	Parent=Os12t0154000-01
Chr12	irgsp1_rep	CDS	2662496	2662583	.	-	2	Parent=Os12t0154000-01
Chr12	irgsp1_rep	CDS	2662413	2662422	.	-	1	Parent=Os12t0154000-01
Chr12	irgsp1_rep	three_prime_UTR	2661957	2662412	.	-	.	Parent=Os12t0154000-01
Chr12	irgsp1_rep	mRNA	2663396	2666737	.	-	.	ID=Os12t0154000-02;Name=Os12t0154000-02;Locus_id=Os12g0154000;Note=Similar to integral membrane protein like.;Transcript_evidence=AK101335 (DDBJ%2C Best hit);ORF_evidence=NP_001150661.1 (RefSeq);InterPro=Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=J033034I10;Expression=AK101335;TENOR=Os12t0154000-02;KEGG=Os12t0154000-02
Chr12	irgsp1_rep	five_prime_UTR	2666414	2666737	.	-	.	Parent=Os12t0154000-02
Chr12	irgsp1_rep	five_prime_UTR	2666191	2666245	.	-	.	Parent=Os12t0154000-02
Chr12	irgsp1_rep	CDS	2666058	2666190	.	-	0	Parent=Os12t0154000-02
Chr12	irgsp1_rep	CDS	2665307	2665491	.	-	2	Parent=Os12t0154000-02
Chr12	irgsp1_rep	CDS	2665022	2665222	.	-	0	Parent=Os12t0154000-02
Chr12	irgsp1_rep	CDS	2664523	2664684	.	-	0	Parent=Os12t0154000-02
Chr12	irgsp1_rep	CDS	2663573	2663893	.	-	0	Parent=Os12t0154000-02
Chr12	irgsp1_rep	three_prime_UTR	2663396	2663572	.	-	.	Parent=Os12t0154000-02
Chr12	irgsp1_rep	mRNA	2678088	2681517	.	+	.	ID=Os12t0154400-00;Name=Os12t0154400-00;Locus_id=Os12g0154400;Note=t-snare domain containing protein.;Transcript_evidence=BT035718 (DDBJ);ORF_evidence=B6TDT7 (UniProt);InterPro=SNARE-complex protein Syntaxin-18 N-terminal (IPR019529);TENOR=Os12t0154400-00;KEGG=Os12t0154400-00
Chr12	irgsp1_rep	five_prime_UTR	2678088	2678296	.	+	.	Parent=Os12t0154400-00
Chr12	irgsp1_rep	CDS	2678297	2678374	.	+	0	Parent=Os12t0154400-00
Chr12	irgsp1_rep	CDS	2678498	2678581	.	+	0	Parent=Os12t0154400-00
Chr12	irgsp1_rep	CDS	2678667	2678771	.	+	0	Parent=Os12t0154400-00
Chr12	irgsp1_rep	CDS	2679167	2679313	.	+	0	Parent=Os12t0154400-00
Chr12	irgsp1_rep	CDS	2679937	2680194	.	+	0	Parent=Os12t0154400-00
Chr12	irgsp1_rep	CDS	2680287	2680418	.	+	0	Parent=Os12t0154400-00
Chr12	irgsp1_rep	CDS	2681265	2681411	.	+	0	Parent=Os12t0154400-00
Chr12	irgsp1_rep	three_prime_UTR	2681412	2681517	.	+	.	Parent=Os12t0154400-00
Chr12	irgsp1_rep	mRNA	2684761	2687996	.	+	.	ID=Os12t0154600-01;Name=Os12t0154600-01;Locus_id=Os12g0154600;Note=Protein of unknown function DUF250 domain containing protein.;Transcript_evidence=AK072996 (DDBJ%2C Best hit);ORF_evidence=NP_001150661.1 (RefSeq);InterPro=Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=J023145H12;Expression=AK072996;TENOR=Os12t0154600-01;KEGG=Os12t0154600-01
Chr12	irgsp1_rep	five_prime_UTR	2684761	2684897	.	+	.	Parent=Os12t0154600-01
Chr12	irgsp1_rep	five_prime_UTR	2685081	2685144	.	+	.	Parent=Os12t0154600-01
Chr12	irgsp1_rep	CDS	2685145	2685277	.	+	0	Parent=Os12t0154600-01
Chr12	irgsp1_rep	CDS	2685928	2686112	.	+	2	Parent=Os12t0154600-01
Chr12	irgsp1_rep	CDS	2686203	2686403	.	+	0	Parent=Os12t0154600-01
Chr12	irgsp1_rep	CDS	2686784	2686945	.	+	0	Parent=Os12t0154600-01
Chr12	irgsp1_rep	CDS	2687371	2687691	.	+	0	Parent=Os12t0154600-01
Chr12	irgsp1_rep	three_prime_UTR	2687692	2687996	.	+	.	Parent=Os12t0154600-01
Chr12	irgsp1_rep	mRNA	2684823	2688178	.	+	.	ID=Os12t0154600-02;Name=Os12t0154600-02;Locus_id=Os12g0154600;Note=Protein of unknown function DUF250 domain containing protein.;Transcript_evidence=AK060206 (DDBJ%2C Best hit);ORF_evidence=NP_001150661.1 (RefSeq);InterPro=Domain of unknown function DUF250 (IPR004853);NIAS_FLcDNA=001-002-A10;Expression=AK060206;TENOR=Os12t0154600-02;KEGG=Os12t0154600-02
Chr12	irgsp1_rep	five_prime_UTR	2684823	2684897	.	+	.	Parent=Os12t0154600-02
Chr12	irgsp1_rep	five_prime_UTR	2685081	2685144	.	+	.	Parent=Os12t0154600-02
Chr12	irgsp1_rep	CDS	2685145	2685277	.	+	0	Parent=Os12t0154600-02
Chr12	irgsp1_rep	CDS	2685928	2686112	.	+	2	Parent=Os12t0154600-02
Chr12	irgsp1_rep	CDS	2686203	2686403	.	+	0	Parent=Os12t0154600-02
Chr12	irgsp1_rep	CDS	2686784	2686945	.	+	0	Parent=Os12t0154600-02
Chr12	irgsp1_rep	CDS	2687371	2687691	.	+	0	Parent=Os12t0154600-02
Chr12	irgsp1_rep	three_prime_UTR	2687692	2688178	.	+	.	Parent=Os12t0154600-02
Chr12	irgsp1_rep	mRNA	2688759	2689826	.	-	.	ID=Os12t0154700-01;Name=Os12t0154700-01;Locus_id=Os12g0154700;RAP-DB Gene Symbol Synonym(s)=GLP12-1%2C OsGLP12-1;RAP-DB Gene Name Synonym(s)=GERMIN-LIKE PROTEIN 12-1%2C Germin-like protein 12-1;CGSNL Gene Symbol=GLP12-1;CGSNL Gene Name=GERMIN-LIKE PROTEIN 12-1;Oryzabase Gene Symbol Synonym(s)=OsGLP12-1;Oryzabase Gene Name Synonym(s)=Germin-like protein 12-1;Note=Germin-like protein 12-1%2C Disease resistance;Transcript_evidence=AK063013 (Genbank);ORF_evidence=Q2QXJ4 (UniProt);GO=Cellular Component: apoplast (GO:0048046),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),Germin%2C manganese binding site (IPR019780);NIAS_FLcDNA=001-110-A07;Manual Curation=May 22%2C 2009;Literature_PMID=19011003;Oryzabase=8234;Expression=AK063013;TENOR=Os12t0154700-01;KEGG=Os12t0154700-01 (EC:1.15.1.1)
Chr12	irgsp1_rep	five_prime_UTR	2689759	2689826	.	-	.	Parent=Os12t0154700-01
Chr12	irgsp1_rep	CDS	2689641	2689758	.	-	0	Parent=Os12t0154700-01
Chr12	irgsp1_rep	CDS	2688949	2689520	.	-	2	Parent=Os12t0154700-01
Chr12	irgsp1_rep	three_prime_UTR	2688759	2688948	.	-	.	Parent=Os12t0154700-01
Chr12	irgsp1_rep	mRNA	2692634	2693443	.	-	.	ID=Os12t0154800-01;Name=Os12t0154800-01;Locus_id=Os12g0154800;RAP-DB Gene Symbol Synonym(s)=GLP12-2%2C OsGLP12-2;RAP-DB Gene Name Synonym(s)=GERMIN-LIKE PROTEIN 12-2%2C Germin-like protein 12-2;CGSNL Gene Symbol=GLP12-2;CGSNL Gene Name=GERMIN-LIKE PROTEIN 12-2;Oryzabase Gene Symbol Synonym(s)=OsGLP12-2;Oryzabase Gene Name Synonym(s)=Germin-like protein 12-2;Note=Germin-like protein 12-2%2C Disease resistance;Transcript_evidence=Inferred from literature;ORF_evidence=Q2QXJ2 (UniProt);GO=Cellular Component: apoplast (GO:0048046),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),Germin%2C manganese binding site (IPR019780);Manual Curation=May 25%2C 2009;Literature_PMID=19011003;Oryzabase=8235;TENOR=Os12t0154800-00
Chr12	irgsp1_rep	CDS	2693326	2693443	.	-	0	Parent=Os12t0154800-01
Chr12	irgsp1_rep	CDS	2692634	2693205	.	-	2	Parent=Os12t0154800-01
Chr12	irgsp1_rep	mRNA	2696407	2697214	.	-	.	ID=Os12t0154900-00;Name=Os12t0154900-00;Locus_id=Os12g0154900;RAP-DB Gene Symbol Synonym(s)=GLP12-3%2C GLP12-1%2C OsGLP12-3;RAP-DB Gene Name Synonym(s)=GERMIN-LIKE PROTEIN 12-3;CGSNL Gene Symbol=GLP12-3;CGSNL Gene Name=GERMIN-LIKE PROTEIN 12-3;Oryzabase Gene Symbol Synonym(s)=OsGLP12-3;Note=Germin-like protein 12-3%2C Disease resistance;Transcript_evidence=Inferred from literature;ORF_evidence=Q2QXJ1 (UniProt);GO=Cellular Component: apoplast (GO:0048046),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710),Germin%2C manganese binding site (IPR019780);Manual Curation=May 25%2C 2009;Literature_PMID=19011003;Oryzabase=8236;TENOR=Os12t0154900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	2697097	2697214	.	-	0	Parent=Os12t0154900-00
Chr12	irgsp1_rep	CDS	2696407	2696978	.	-	2	Parent=Os12t0154900-00
Chr12	irgsp1_rep	mRNA	2699175	2700272	.	-	.	ID=Os12t0155000-01;Name=Os12t0155000-01;Locus_id=Os12g0155000;RAP-DB Gene Symbol Synonym(s)=GLP12-4;RAP-DB Gene Name Synonym(s)=GERMIN-LIKE PROTEIN 12-4;CGSNL Gene Symbol=GLP12-4;CGSNL Gene Name=GERMIN-LIKE PROTEIN 12-4;Oryzabase Gene Symbol Synonym(s)=OsGLP12-4;Note=Germin-like protein 12-4%2C Disease resistance;Transcript_evidence=CT837600 (Genbank);ORF_evidence=Q2QXJ0 (UniProt);GO=Cellular Component: apoplast (GO:0048046),Molecular Function: manganese ion binding (GO:0030145),Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Germin (IPR001929),Cupin 1 (IPR006045),Cupin%2C RmlC-type (IPR011051),Germin%2C manganese binding site (IPR019780);Manual Curation=May 29%2C 2009;Literature_PMID=19011003;Oryzabase=10290;TENOR=Os12t0155000-00
Chr12	irgsp1_rep	five_prime_UTR	2699973	2700272	.	-	.	Parent=Os12t0155000-01
Chr12	irgsp1_rep	CDS	2699385	2699972	.	-	0	Parent=Os12t0155000-01
Chr12	irgsp1_rep	three_prime_UTR	2699175	2699384	.	-	.	Parent=Os12t0155000-01
Chr12	irgsp1_rep	mRNA	2705806	2706749	.	-	.	ID=Os12t0155100-01;Name=Os12t0155100-01;Locus_id=Os12g0155100;Note=Protein of unknown function DUF3049 domain containing protein.;Transcript_evidence=AK060647 (DDBJ%2C Best hit);ORF_evidence=A2ZI76 (UniProt);InterPro=Protein of unknown function DUF3049 (IPR021410);NIAS_FLcDNA=001-027-G07;Expression=AK060647;TENOR=Os12t0155100-01;KEGG=Os12t0155100-01
Chr12	irgsp1_rep	five_prime_UTR	2706696	2706749	.	-	.	Parent=Os12t0155100-01
Chr12	irgsp1_rep	CDS	2705859	2706695	.	-	0	Parent=Os12t0155100-01
Chr12	irgsp1_rep	three_prime_UTR	2705806	2705858	.	-	.	Parent=Os12t0155100-01
Chr12	irgsp1_rep	mRNA	2708503	2712854	.	-	.	ID=Os12t0155200-01;Name=Os12t0155200-01;Locus_id=Os12g0155200;Note=Similar to Rac GTPase activating protein.;Transcript_evidence=AK067300 (DDBJ%2C Best hit);ORF_evidence=B6SWP2 (UniProt);GO=Biological Process: signal transduction (GO:0007165),Cellular Component: intracellular (GO:0005622),Molecular Function: protein binding (GO:0005515);InterPro=PAK-box/P21-Rho-binding (IPR000095),Rho GTPase-activating protein domain (IPR000198),Rho GTPase activation protein (IPR008936);NIAS_FLcDNA=J013106C08;Expression=AK067300;TENOR=Os12t0155200-01;KEGG=Os12t0155200-01
Chr12	irgsp1_rep	five_prime_UTR	2712663	2712854	.	-	.	Parent=Os12t0155200-01
Chr12	irgsp1_rep	CDS	2712538	2712662	.	-	0	Parent=Os12t0155200-01
Chr12	irgsp1_rep	CDS	2710231	2710351	.	-	1	Parent=Os12t0155200-01
Chr12	irgsp1_rep	CDS	2709997	2710140	.	-	0	Parent=Os12t0155200-01
Chr12	irgsp1_rep	three_prime_UTR	2709425	2709996	.	-	.	Parent=Os12t0155200-01
Chr12	irgsp1_rep	three_prime_UTR	2708503	2709345	.	-	.	Parent=Os12t0155200-01
Chr12	irgsp1_rep	mRNA	2708518	2713421	.	+	.	ID=Os12t0155250-00;Name=Os12t0155250-00;Locus_id=Os12g0155250;Note=Hypothetical protein.;Transcript_evidence=tplb0049d09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0155250-00
Chr12	irgsp1_rep	five_prime_UTR	2708518	2709356	.	+	.	Parent=Os12t0155250-00
Chr12	irgsp1_rep	five_prime_UTR	2709430	2709449	.	+	.	Parent=Os12t0155250-00
Chr12	irgsp1_rep	CDS	2709450	2709652	.	+	0	Parent=Os12t0155250-00
Chr12	irgsp1_rep	CDS	2710018	2710147	.	+	1	Parent=Os12t0155250-00
Chr12	irgsp1_rep	CDS	2710237	2710332	.	+	0	Parent=Os12t0155250-00
Chr12	irgsp1_rep	three_prime_UTR	2710333	2710354	.	+	.	Parent=Os12t0155250-00
Chr12	irgsp1_rep	three_prime_UTR	2712541	2713421	.	+	.	Parent=Os12t0155250-00
Chr12	irgsp1_rep	mRNA	2724452	2726348	.	+	.	ID=Os12t0155300-01;Name=Os12t0155300-01;Locus_id=Os12g0155300;Note=Conserved hypothetical protein.;Transcript_evidence=AK060480 (DDBJ%2C Best hit);ORF_evidence=Q2QXI6 (UniProt);NIAS_FLcDNA=001-012-G08;TENOR=Os12t0155300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	2724452	2724452	.	+	.	Parent=Os12t0155300-01
Chr12	irgsp1_rep	CDS	2724453	2724576	.	+	0	Parent=Os12t0155300-01
Chr12	irgsp1_rep	CDS	2724649	2725074	.	+	2	Parent=Os12t0155300-01
Chr12	irgsp1_rep	CDS	2725192	2725496	.	+	2	Parent=Os12t0155300-01
Chr12	irgsp1_rep	CDS	2725610	2725773	.	+	0	Parent=Os12t0155300-01
Chr12	irgsp1_rep	CDS	2725849	2725930	.	+	1	Parent=Os12t0155300-01
Chr12	irgsp1_rep	three_prime_UTR	2725931	2725970	.	+	.	Parent=Os12t0155300-01
Chr12	irgsp1_rep	three_prime_UTR	2726055	2726348	.	+	.	Parent=Os12t0155300-01
Chr12	irgsp1_rep	mRNA	2732249	2732695	.	-	.	ID=Os12t0155400-00;Name=Os12t0155400-00;Locus_id=Os12g0155400;Note=Similar to Leucine Rich Repeat family protein%2C expressed.;Transcript_evidence=X79130 (DDBJ);ORF_evidence=Q8S5D5 (UniProt);TENOR=Os12t0155400-00;KEGG=Os12t0155400-00
Chr12	irgsp1_rep	CDS	2732249	2732695	.	-	0	Parent=Os12t0155400-00
Chr12	irgsp1_rep	mRNA	2735598	2735672	.	+	.	ID=Os12t0155600-00;Name=Os12t0155600-00;Locus_id=Os12g0155600;Note=Non-protein coding transcript.;Transcript_evidence=X06283 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0155600-00
Chr12	irgsp1_rep	exon	2735598	2735672	.	+	.	Parent=Os12t0155600-00
Chr12	irgsp1_rep	mRNA	2751805	2752653	.	+	.	ID=Os12t0156000-01;Name=Os12t0156000-01;Locus_id=Os12g0156000;RAP-DB Gene Symbol Synonym(s)=OsS40-11;RAP-DB Gene Name Synonym(s)=S40 protein 11;CGSNL Gene Symbol=S40-11;CGSNL Gene Name=S40 PROTEIN 11;Oryzabase Gene Symbol Synonym(s)=OsS40-11;Oryzabase Gene Name Synonym(s)=S40 protein 11;Note=A member of S40 gene family%2C Leaf senescence%2C Response to pathogen infection;Transcript_evidence=Inferred from literature;ORF_evidence=Q2QXI0;InterPro=Senescence regulator S40 (IPR007608);Manual Curation=November 11%2C 2019;Literature_PMID=31046677;Oryzabase=22081;TENOR=Os12t0156000-00
Chr12	irgsp1_rep	five_prime_UTR	2751805	2751930	.	+	.	Parent=Os12t0156000-01
Chr12	irgsp1_rep	CDS	2751931	2752428	.	+	0	Parent=Os12t0156000-01
Chr12	irgsp1_rep	three_prime_UTR	2752429	2752653	.	+	.	Parent=Os12t0156000-01
Chr12	irgsp1_rep	mRNA	2762322	2763599	.	+	.	ID=Os12t0156100-01;Name=Os12t0156100-01;Locus_id=Os12g0156100;CGSNL Gene Symbol=NAC134;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 134;Oryzabase Gene Symbol Synonym(s)=ONAC134;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 134;Note=Similar to NAC-domain containing protein 90 (ANAC090).;Transcript_evidence=AK109534 (DDBJ%2C Best hit);ORF_evidence=XP_002874067.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=002-119-C08;Oryzabase=15893;Expression=AK109534;TENOR=Os12t0156100-01;KEGG=Os12t0156100-01
Chr12	irgsp1_rep	five_prime_UTR	2762322	2762477	.	+	.	Parent=Os12t0156100-01
Chr12	irgsp1_rep	CDS	2762478	2763401	.	+	0	Parent=Os12t0156100-01
Chr12	irgsp1_rep	three_prime_UTR	2763402	2763599	.	+	.	Parent=Os12t0156100-01
Chr12	irgsp1_rep	mRNA	2768411	2776846	.	+	.	ID=Os12t0156200-00;Name=Os12t0156200-00;Locus_id=Os12g0156200;Note=Similar to DNA-binding factor of bZIP class.;Transcript_evidence=AY333186 (DDBJ%2C Best hit);ORF_evidence=Q01LP5 (UniProt);Expression=AY333186;TENOR=Os12t0156200-00;KEGG=Os12t0156200-00
Chr12	irgsp1_rep	five_prime_UTR	2768411	2768465	.	+	.	Parent=Os12t0156200-00
Chr12	irgsp1_rep	CDS	2768466	2768538	.	+	0	Parent=Os12t0156200-00
Chr12	irgsp1_rep	CDS	2768570	2768650	.	+	2	Parent=Os12t0156200-00
Chr12	irgsp1_rep	CDS	2768791	2770493	.	+	2	Parent=Os12t0156200-00
Chr12	irgsp1_rep	three_prime_UTR	2770494	2770937	.	+	.	Parent=Os12t0156200-00
Chr12	irgsp1_rep	three_prime_UTR	2771065	2774947	.	+	.	Parent=Os12t0156200-00
Chr12	irgsp1_rep	three_prime_UTR	2775340	2775525	.	+	.	Parent=Os12t0156200-00
Chr12	irgsp1_rep	three_prime_UTR	2775784	2776209	.	+	.	Parent=Os12t0156200-00
Chr12	irgsp1_rep	three_prime_UTR	2776338	2776415	.	+	.	Parent=Os12t0156200-00
Chr12	irgsp1_rep	three_prime_UTR	2776526	2776591	.	+	.	Parent=Os12t0156200-00
Chr12	irgsp1_rep	three_prime_UTR	2776640	2776846	.	+	.	Parent=Os12t0156200-00
Chr12	irgsp1_rep	mRNA	2780564	2783626	.	+	.	ID=Os12t0156400-01;Name=Os12t0156400-01;Locus_id=Os12g0156400;Note=Dcp1-like decapping family protein.;Transcript_evidence=AK072086 (DDBJ%2C Best hit),AK099278 (DDBJ%2C Best hit);ORF_evidence=NP_001149166.1 (RefSeq);InterPro=Dcp1-like decapping (IPR010334);NIAS_FLcDNA=J013116L20,J023125D09;Expression=AK072086;TENOR=Os12t0156400-01;KEGG=Os12t0156400-01
Chr12	irgsp1_rep	five_prime_UTR	2780564	2780640	.	+	.	Parent=Os12t0156400-01
Chr12	irgsp1_rep	CDS	2780641	2780832	.	+	0	Parent=Os12t0156400-01
Chr12	irgsp1_rep	CDS	2780957	2780997	.	+	0	Parent=Os12t0156400-01
Chr12	irgsp1_rep	CDS	2781113	2781162	.	+	1	Parent=Os12t0156400-01
Chr12	irgsp1_rep	CDS	2781774	2781918	.	+	2	Parent=Os12t0156400-01
Chr12	irgsp1_rep	CDS	2782248	2782304	.	+	1	Parent=Os12t0156400-01
Chr12	irgsp1_rep	CDS	2782398	2782521	.	+	1	Parent=Os12t0156400-01
Chr12	irgsp1_rep	CDS	2782748	2783209	.	+	0	Parent=Os12t0156400-01
Chr12	irgsp1_rep	CDS	2783291	2783344	.	+	0	Parent=Os12t0156400-01
Chr12	irgsp1_rep	three_prime_UTR	2783345	2783626	.	+	.	Parent=Os12t0156400-01
Chr12	irgsp1_rep	mRNA	2784339	2785620	.	-	.	ID=Os12t0156500-00;Name=Os12t0156500-00;Locus_id=Os12g0156500;Oryzabase Gene Symbol Synonym(s)=OsFbox644%2C Os_F0725;Oryzabase Gene Name Synonym(s)=F-box protein 644;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=EU969867 (DDBJ);ORF_evidence=NP_001151212.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17405;TENOR=Os12t0156500-00;KEGG=Os12t0156500-00
Chr12	irgsp1_rep	CDS	2784457	2785620	.	-	0	Parent=Os12t0156500-00
Chr12	irgsp1_rep	three_prime_UTR	2784339	2784456	.	-	.	Parent=Os12t0156500-00
Chr12	irgsp1_rep	mRNA	2816100	2822955	.	+	.	ID=Os12t0156866-00;Name=Os12t0156866-00;Locus_id=Os12g0156866;Oryzabase Gene Symbol Synonym(s)=OsCAT9;Oryzabase Gene Name Synonym(s)=cationic amino acid transporter 9;Note=Similar to Amino acid permease family protein%2C expressed.;Transcript_evidence=AK332141 (DDBJ);ORF_evidence=Q2QXH2 (UniProt);GO=Biological Process: amino acid transmembrane transport (GO:0003333),Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: amino acid transmembrane transporter activity (GO:0015171);InterPro=Amino acid/polyamine transporter I (IPR002293),Amino acid permease domain (IPR004841),Cationic amino acid transporter (IPR015606);Oryzabase=18543;TENOR=Os12t0156866-00;KEGG=Os12t0156866-00
Chr12	irgsp1_rep	five_prime_UTR	2816100	2816178	.	+	.	Parent=Os12t0156866-00
Chr12	irgsp1_rep	CDS	2816179	2816608	.	+	0	Parent=Os12t0156866-00
Chr12	irgsp1_rep	CDS	2817848	2818070	.	+	2	Parent=Os12t0156866-00
Chr12	irgsp1_rep	CDS	2819279	2819630	.	+	1	Parent=Os12t0156866-00
Chr12	irgsp1_rep	CDS	2820304	2820535	.	+	0	Parent=Os12t0156866-00
Chr12	irgsp1_rep	CDS	2822312	2822877	.	+	2	Parent=Os12t0156866-00
Chr12	irgsp1_rep	three_prime_UTR	2822878	2822955	.	+	.	Parent=Os12t0156866-00
Chr12	irgsp1_rep	mRNA	2817839	2822868	.	-	.	ID=Os12t0156883-00;Name=Os12t0156883-00;Locus_id=Os12g0156883;Note=Hypothetical protein.;Transcript_evidence=tplb0044b08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0156883-00
Chr12	irgsp1_rep	five_prime_UTR	2822322	2822868	.	-	.	Parent=Os12t0156883-00
Chr12	irgsp1_rep	five_prime_UTR	2820312	2820541	.	-	.	Parent=Os12t0156883-00
Chr12	irgsp1_rep	five_prime_UTR	2819465	2819640	.	-	.	Parent=Os12t0156883-00
Chr12	irgsp1_rep	CDS	2819282	2819464	.	-	0	Parent=Os12t0156883-00
Chr12	irgsp1_rep	CDS	2817853	2818041	.	-	0	Parent=Os12t0156883-00
Chr12	irgsp1_rep	three_prime_UTR	2817839	2817852	.	-	.	Parent=Os12t0156883-00
Chr12	irgsp1_rep	mRNA	2830044	2831946	.	+	.	ID=Os12t0156900-00;Name=Os12t0156900-00;Locus_id=Os12g0156900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=BT018623 (DDBJ);ORF_evidence=Q2QXH1 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os12t0156900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	2830044	2831936	.	+	0	Parent=Os12t0156900-00
Chr12	irgsp1_rep	three_prime_UTR	2831937	2831946	.	+	.	Parent=Os12t0156900-00
Chr12	irgsp1_rep	mRNA	2835307	2837128	.	-	.	ID=Os12t0157000-01;Name=Os12t0157000-01;Locus_id=Os12g0157000;Note=DNA-binding pseudobarrel domain domain containing protein.;Transcript_evidence=AK110593 (DDBJ%2C Best hit);ORF_evidence=B8BNA0 (UniProt);InterPro=DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=002-168-F09;Expression=AK110593;TENOR=Os12t0157000-01;KEGG=Os12t0157000-01
Chr12	irgsp1_rep	five_prime_UTR	2837127	2837128	.	-	.	Parent=Os12t0157000-01
Chr12	irgsp1_rep	CDS	2836999	2837126	.	-	0	Parent=Os12t0157000-01
Chr12	irgsp1_rep	CDS	2836377	2836678	.	-	1	Parent=Os12t0157000-01
Chr12	irgsp1_rep	CDS	2836043	2836235	.	-	2	Parent=Os12t0157000-01
Chr12	irgsp1_rep	CDS	2835866	2835875	.	-	1	Parent=Os12t0157000-01
Chr12	irgsp1_rep	three_prime_UTR	2835307	2835865	.	-	.	Parent=Os12t0157000-01
Chr12	irgsp1_rep	mRNA	2835557	2837551	.	+	.	ID=Os12t0157066-00;Name=Os12t0157066-00;Locus_id=Os12g0157066;Note=Hypothetical protein.;Transcript_evidence=AK375277 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0157066-00
Chr12	irgsp1_rep	five_prime_UTR	2835557	2835880	.	+	.	Parent=Os12t0157066-00
Chr12	irgsp1_rep	five_prime_UTR	2835941	2836936	.	+	.	Parent=Os12t0157066-00
Chr12	irgsp1_rep	CDS	2836937	2837155	.	+	0	Parent=Os12t0157066-00
Chr12	irgsp1_rep	three_prime_UTR	2837156	2837551	.	+	.	Parent=Os12t0157066-00
Chr12	irgsp1_rep	mRNA	2851827	2856262	.	-	.	ID=Os12t0157200-01;Name=Os12t0157200-01;Locus_id=Os12g0157200;Note=EF-Hand type domain containing protein.;Transcript_evidence=AK064843 (DDBJ%2C Best hit);ORF_evidence=NP_196244.1 (RefSeq);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=TLDc (IPR006571),EF-hand-like domain (IPR011992);NIAS_FLcDNA=J013000G07;Expression=AK064843;TENOR=Os12t0157200-01;KEGG=Os12t0157200-01
Chr12	irgsp1_rep	five_prime_UTR	2856164	2856262	.	-	.	Parent=Os12t0157200-01
Chr12	irgsp1_rep	CDS	2856102	2856163	.	-	0	Parent=Os12t0157200-01
Chr12	irgsp1_rep	CDS	2855879	2855981	.	-	1	Parent=Os12t0157200-01
Chr12	irgsp1_rep	CDS	2855670	2855777	.	-	0	Parent=Os12t0157200-01
Chr12	irgsp1_rep	CDS	2854812	2854897	.	-	0	Parent=Os12t0157200-01
Chr12	irgsp1_rep	CDS	2854325	2854563	.	-	1	Parent=Os12t0157200-01
Chr12	irgsp1_rep	CDS	2852917	2853106	.	-	2	Parent=Os12t0157200-01
Chr12	irgsp1_rep	CDS	2852532	2852715	.	-	1	Parent=Os12t0157200-01
Chr12	irgsp1_rep	CDS	2852136	2852441	.	-	0	Parent=Os12t0157200-01
Chr12	irgsp1_rep	three_prime_UTR	2851827	2852135	.	-	.	Parent=Os12t0157200-01
Chr12	irgsp1_rep	mRNA	2857507	2857830	.	+	.	ID=Os12t0157400-00;Name=Os12t0157400-00;Locus_id=Os12g0157400;Note=Similar to NADH-ubiquinone oxidoreductase 18 kDa subunit.;Transcript_evidence=ab initio prediction;ORF_evidence=B4FGH7 (UniProt);TENOR=Os12t0157400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	2857507	2857830	.	+	0	Parent=Os12t0157400-00
Chr12	irgsp1_rep	mRNA	2869477	2870846	.	+	.	ID=Os12t0157700-00;Name=Os12t0157700-00;Locus_id=Os12g0157700;Note=Hypothetical conserved gene.;Transcript_evidence=BT061996 (DDBJ);ORF_evidence=NP_001066201.1 (RefSeq);TENOR=Os12t0157700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	2869477	2869866	.	+	0	Parent=Os12t0157700-00
Chr12	irgsp1_rep	three_prime_UTR	2869867	2869910	.	+	.	Parent=Os12t0157700-00
Chr12	irgsp1_rep	three_prime_UTR	2870704	2870846	.	+	.	Parent=Os12t0157700-00
Chr12	irgsp1_rep	mRNA	2898694	2900067	.	+	.	ID=Os12t0158300-01;Name=Os12t0158300-01;Locus_id=Os12g0158300;Oryzabase Gene Symbol Synonym(s)=OsOFP19%2C OsOFP30;Oryzabase Gene Name Synonym(s)=OVATE family protein 19%2C ovate family protein 30%2C OVATE-domain containing protein 30;Note=Protein of unknown function DUF623%2C plant domain containing protein.;Transcript_evidence=AK242493 (DDBJ%2C Best hit);ORF_evidence=NP_001066202.1 (RefSeq);InterPro=Domain of unknown function DUF623 (IPR006458);NIAS_FLcDNA=J080307E12;Oryzabase=18315;TENOR=Os12t0158300-01;KEGG=Os12t0158300-01
Chr12	irgsp1_rep	five_prime_UTR	2898694	2898823	.	+	.	Parent=Os12t0158300-01
Chr12	irgsp1_rep	CDS	2898824	2899861	.	+	0	Parent=Os12t0158300-01
Chr12	irgsp1_rep	three_prime_UTR	2899862	2900067	.	+	.	Parent=Os12t0158300-01
Chr12	irgsp1_rep	mRNA	2911273	2912589	.	-	.	ID=Os12t0158400-00;Name=Os12t0158400-00;Locus_id=Os12g0158400;Oryzabase Gene Symbol Synonym(s)=OsOFP20%2C OsOFP31;Oryzabase Gene Name Synonym(s)=OVATE family protein 20%2C ovate family protein 31%2C OVATE-domain containing protein 31;Note=Protein of unknown function DUF623%2C plant domain containing protein.;Transcript_evidence=CT835528 (DDBJ%2C Best hit);ORF_evidence=NP_001151444.1 (RefSeq);InterPro=Domain of unknown function DUF623 (IPR006458);Oryzabase=18316;TENOR=Os12t0158400-00;KEGG=Os12t0158400-00
Chr12	irgsp1_rep	five_prime_UTR	2912467	2912589	.	-	.	Parent=Os12t0158400-00
Chr12	irgsp1_rep	CDS	2911702	2912466	.	-	0	Parent=Os12t0158400-00
Chr12	irgsp1_rep	three_prime_UTR	2911273	2911701	.	-	.	Parent=Os12t0158400-00
Chr12	irgsp1_rep	mRNA	2925207	2925261	.	-	.	ID=Os12t0158500-00;Name=Os12t0158500-00;Locus_id=Os12g0158500;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0158500-00
Chr12	irgsp1_rep	exon	2925207	2925261	.	-	.	Parent=Os12t0158500-00
Chr12	irgsp1_rep	mRNA	2928082	2934406	.	+	.	ID=Os12t0158600-00;Name=Os12t0158600-00;Locus_id=Os12g0158600;Note=TB2/DP1 and HVA22 related protein family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9GBZ6 (UniProt);InterPro=TB2/DP1/HVA22-related protein (IPR004345);TENOR=Os12t0158600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	2928082	2928113	.	+	0	Parent=Os12t0158600-00
Chr12	irgsp1_rep	CDS	2928309	2928407	.	+	1	Parent=Os12t0158600-00
Chr12	irgsp1_rep	CDS	2931744	2931788	.	+	1	Parent=Os12t0158600-00
Chr12	irgsp1_rep	CDS	2931886	2931949	.	+	1	Parent=Os12t0158600-00
Chr12	irgsp1_rep	CDS	2932077	2932283	.	+	0	Parent=Os12t0158600-00
Chr12	irgsp1_rep	CDS	2934218	2934406	.	+	0	Parent=Os12t0158600-00
Chr12	irgsp1_rep	mRNA	2934769	2935639	.	-	.	ID=Os12t0158700-01;Name=Os12t0158700-01;Locus_id=Os12g0158700;Note=Conserved hypothetical protein.;Transcript_evidence=AK240851 (DDBJ%2C Best hit),AK242907 (DDBJ%2C Best hit),AK289116 (DDBJ%2C Best hit);ORF_evidence=NP_001066205.2 (RefSeq);NIAS_FLcDNA=J065021C04,J090082H20,J090097H15;TENOR=Os12t0158700-01;KEGG=Os12t0158700-01
Chr12	irgsp1_rep	five_prime_UTR	2935587	2935639	.	-	.	Parent=Os12t0158700-01
Chr12	irgsp1_rep	CDS	2935065	2935586	.	-	0	Parent=Os12t0158700-01
Chr12	irgsp1_rep	three_prime_UTR	2934769	2935064	.	-	.	Parent=Os12t0158700-01
Chr12	irgsp1_rep	mRNA	2939741	2945064	.	-	.	ID=Os12t0158800-01;Name=Os12t0158800-01;Locus_id=Os12g0158800;Oryzabase Gene Symbol Synonym(s)=Orysa%3BE2F2%2C OsE2F2%2C E2F2%2C DLN252%2C OsDLN252;Oryzabase Gene Name Synonym(s)=E2F transcription factor 2%2C DLN repressor 252%2C DLN motif protein 252;Note=Similar to E2F homolog (Fragment).;Transcript_evidence=AK059233 (DDBJ%2C Best hit);ORF_evidence=Q9FRZ8 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: transcription factor complex (GO:0005667),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Transcription factor E2F/dimerisation partner (TDP) (IPR003316),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),E2F Family (IPR015633);NIAS_FLcDNA=001-024-E10;Oryzabase=13311;Expression=AK059233;TENOR=Os12t0158800-01;KEGG=Os12t0158800-01
Chr12	irgsp1_rep	five_prime_UTR	2944956	2945064	.	-	.	Parent=Os12t0158800-01
Chr12	irgsp1_rep	CDS	2944797	2944955	.	-	0	Parent=Os12t0158800-01
Chr12	irgsp1_rep	CDS	2943036	2943225	.	-	0	Parent=Os12t0158800-01
Chr12	irgsp1_rep	CDS	2942883	2942939	.	-	2	Parent=Os12t0158800-01
Chr12	irgsp1_rep	CDS	2942692	2942777	.	-	2	Parent=Os12t0158800-01
Chr12	irgsp1_rep	CDS	2942513	2942601	.	-	0	Parent=Os12t0158800-01
Chr12	irgsp1_rep	CDS	2942382	2942436	.	-	1	Parent=Os12t0158800-01
Chr12	irgsp1_rep	CDS	2942212	2942264	.	-	0	Parent=Os12t0158800-01
Chr12	irgsp1_rep	CDS	2942081	2942131	.	-	1	Parent=Os12t0158800-01
Chr12	irgsp1_rep	CDS	2941920	2941968	.	-	1	Parent=Os12t0158800-01
Chr12	irgsp1_rep	CDS	2941763	2941828	.	-	0	Parent=Os12t0158800-01
Chr12	irgsp1_rep	CDS	2941605	2941681	.	-	0	Parent=Os12t0158800-01
Chr12	irgsp1_rep	CDS	2941274	2941493	.	-	1	Parent=Os12t0158800-01
Chr12	irgsp1_rep	CDS	2940579	2940645	.	-	0	Parent=Os12t0158800-01
Chr12	irgsp1_rep	CDS	2940334	2940455	.	-	2	Parent=Os12t0158800-01
Chr12	irgsp1_rep	three_prime_UTR	2939741	2940333	.	-	.	Parent=Os12t0158800-01
Chr12	irgsp1_rep	mRNA	2947866	2948580	.	-	.	ID=Os12t0158900-00;Name=Os12t0158900-00;Locus_id=Os12g0158900;Note=Late embryogenesis abundant protein%2C LEA-14 domain containing protein.;Transcript_evidence=AK360171 (DDBJ);ORF_evidence=NP_001066207.1 (RefSeq);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);TENOR=Os12t0158900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	2948541	2948580	.	-	.	Parent=Os12t0158900-00
Chr12	irgsp1_rep	CDS	2947866	2948540	.	-	0	Parent=Os12t0158900-00
Chr12	irgsp1_rep	mRNA	2950701	2951591	.	-	.	ID=Os12t0159000-01;Name=Os12t0159000-01;Locus_id=Os12g0159000;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK107952 (DDBJ%2C Best hit);ORF_evidence=NP_001151117.1 (RefSeq);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=002-135-B12;Expression=AK107952;TENOR=Os12t0159000-01;KEGG=Os12t0159000-01
Chr12	irgsp1_rep	five_prime_UTR	2951491	2951591	.	-	.	Parent=Os12t0159000-01
Chr12	irgsp1_rep	CDS	2950912	2951490	.	-	0	Parent=Os12t0159000-01
Chr12	irgsp1_rep	three_prime_UTR	2950701	2950911	.	-	.	Parent=Os12t0159000-01
Chr12	irgsp1_rep	mRNA	2954867	2964873	.	+	.	ID=Os12t0159100-01;Name=Os12t0159100-01;Locus_id=Os12g0159100;Note=Hypothetical conserved gene.;Transcript_evidence=AK241783 (DDBJ%2C Best hit);ORF_evidence=Q2QXF4 (UniProt);NIAS_FLcDNA=J065206M04;TENOR=Os12t0159100-01;KEGG=Os12t0159100-01
Chr12	irgsp1_rep	five_prime_UTR	2954867	2954867	.	+	.	Parent=Os12t0159100-01
Chr12	irgsp1_rep	CDS	2954868	2954966	.	+	0	Parent=Os12t0159100-01
Chr12	irgsp1_rep	CDS	2955041	2955215	.	+	0	Parent=Os12t0159100-01
Chr12	irgsp1_rep	CDS	2961797	2961825	.	+	2	Parent=Os12t0159100-01
Chr12	irgsp1_rep	three_prime_UTR	2961826	2961940	.	+	.	Parent=Os12t0159100-01
Chr12	irgsp1_rep	three_prime_UTR	2962019	2962292	.	+	.	Parent=Os12t0159100-01
Chr12	irgsp1_rep	three_prime_UTR	2962387	2962489	.	+	.	Parent=Os12t0159100-01
Chr12	irgsp1_rep	three_prime_UTR	2962710	2962840	.	+	.	Parent=Os12t0159100-01
Chr12	irgsp1_rep	three_prime_UTR	2962924	2963020	.	+	.	Parent=Os12t0159100-01
Chr12	irgsp1_rep	three_prime_UTR	2963107	2963224	.	+	.	Parent=Os12t0159100-01
Chr12	irgsp1_rep	three_prime_UTR	2963313	2963473	.	+	.	Parent=Os12t0159100-01
Chr12	irgsp1_rep	three_prime_UTR	2963558	2964074	.	+	.	Parent=Os12t0159100-01
Chr12	irgsp1_rep	three_prime_UTR	2964155	2964234	.	+	.	Parent=Os12t0159100-01
Chr12	irgsp1_rep	three_prime_UTR	2964312	2964386	.	+	.	Parent=Os12t0159100-01
Chr12	irgsp1_rep	three_prime_UTR	2964463	2964873	.	+	.	Parent=Os12t0159100-01
Chr12	irgsp1_rep	mRNA	2971305	2974150	.	+	.	ID=Os12t0159500-01;Name=Os12t0159500-01;Locus_id=Os12g0159500;Note=Conserved hypothetical protein.;Transcript_evidence=AK102059 (DDBJ%2C Best hit),AK103100 (DDBJ%2C Best hit);ORF_evidence=Q2QXF2 (UniProt);NIAS_FLcDNA=J033082D08,J033118N16;TENOR=Os12t0159500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	2971305	2971658	.	+	0	Parent=Os12t0159500-01
Chr12	irgsp1_rep	three_prime_UTR	2971659	2974150	.	+	.	Parent=Os12t0159500-01
Chr12	irgsp1_rep	mRNA	2972045	2974159	.	+	.	ID=Os12t0159500-03;Name=Os12t0159500-03;Locus_id=Os12g0159500;Note=Hypothetical conserved gene.;Transcript_evidence=AK105655 (DDBJ%2C Best hit);ORF_evidence=B9GBZ8 (UniProt);NIAS_FLcDNA=001-200-G06;TENOR=Os12t0159500-03;KEGG=Os12t0159500-03
Chr12	irgsp1_rep	five_prime_UTR	2972045	2973767	.	+	.	Parent=Os12t0159500-03
Chr12	irgsp1_rep	CDS	2973768	2973971	.	+	0	Parent=Os12t0159500-03
Chr12	irgsp1_rep	three_prime_UTR	2973972	2974159	.	+	.	Parent=Os12t0159500-03
Chr12	irgsp1_rep	mRNA	2979796	2980850	.	-	.	ID=Os12t0159600-01;Name=Os12t0159600-01;Locus_id=Os12g0159600;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK070481 (DDBJ%2C Best hit);ORF_evidence=NP_001149809.1 (RefSeq);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=J023048L05;Expression=AK070481;TENOR=Os12t0159600-01;KEGG=Os12t0159600-01
Chr12	irgsp1_rep	five_prime_UTR	2980658	2980850	.	-	.	Parent=Os12t0159600-01
Chr12	irgsp1_rep	CDS	2980019	2980657	.	-	0	Parent=Os12t0159600-01
Chr12	irgsp1_rep	three_prime_UTR	2979796	2980018	.	-	.	Parent=Os12t0159600-01
Chr12	irgsp1_rep	mRNA	2979707	2980740	.	-	.	ID=Os12t0159600-02;Name=Os12t0159600-02;Locus_id=Os12g0159600;Note=Harpin-induced 1 domain containing protein.;Transcript_evidence=AK061582 (DDBJ%2C Best hit),AK104185 (DDBJ%2C Best hit);ORF_evidence=NP_001149809.1 (RefSeq);InterPro=Late embryogenesis abundant protein%2C LEA-14 (IPR004864);NIAS_FLcDNA=006-311-H12,006-302-D07;TENOR=Os12t0159600-02
Chr12	irgsp1_rep	five_prime_UTR	2980658	2980740	.	-	.	Parent=Os12t0159600-02
Chr12	irgsp1_rep	CDS	2980019	2980657	.	-	0	Parent=Os12t0159600-02
Chr12	irgsp1_rep	three_prime_UTR	2979707	2980018	.	-	.	Parent=Os12t0159600-02
Chr12	irgsp1_rep	mRNA	2986925	2993084	.	-	.	ID=Os12t0159700-00;Name=Os12t0159700-00;Locus_id=Os12g0159700;CGSNL Gene Symbol=EXO70A4;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A4;Oryzabase Gene Symbol Synonym(s)=OsEXO70A4%2C OsExo70A4%2C OrysaA4_Exo70;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein A4;Note=Similar to protein binding protein.;Transcript_evidence=tplb0017m18 (Wheat FLcDNA);ORF_evidence=NP_001147814.1 (RefSeq);GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exo70 exocyst complex subunit (IPR004140),Cullin repeat-like-containing domain (IPR016159);Oryzabase=20323;TENOR=Os12t0159700-00;KEGG=Os12t0159700-00
Chr12	irgsp1_rep	five_prime_UTR	2993072	2993084	.	-	.	Parent=Os12t0159700-00
Chr12	irgsp1_rep	CDS	2992904	2993071	.	-	0	Parent=Os12t0159700-00
Chr12	irgsp1_rep	CDS	2992688	2992783	.	-	0	Parent=Os12t0159700-00
Chr12	irgsp1_rep	CDS	2991076	2991281	.	-	0	Parent=Os12t0159700-00
Chr12	irgsp1_rep	CDS	2990690	2990926	.	-	1	Parent=Os12t0159700-00
Chr12	irgsp1_rep	CDS	2990406	2990544	.	-	1	Parent=Os12t0159700-00
Chr12	irgsp1_rep	CDS	2990122	2990334	.	-	0	Parent=Os12t0159700-00
Chr12	irgsp1_rep	CDS	2989693	2989898	.	-	0	Parent=Os12t0159700-00
Chr12	irgsp1_rep	CDS	2989019	2989219	.	-	1	Parent=Os12t0159700-00
Chr12	irgsp1_rep	CDS	2988354	2988477	.	-	1	Parent=Os12t0159700-00
Chr12	irgsp1_rep	CDS	2987658	2987737	.	-	0	Parent=Os12t0159700-00
Chr12	irgsp1_rep	CDS	2987423	2987569	.	-	1	Parent=Os12t0159700-00
Chr12	irgsp1_rep	CDS	2986930	2987047	.	-	1	Parent=Os12t0159700-00
Chr12	irgsp1_rep	three_prime_UTR	2986925	2986929	.	-	.	Parent=Os12t0159700-00
Chr12	irgsp1_rep	mRNA	2996185	2996805	.	+	.	ID=Os12t0160100-01;Name=Os12t0160100-01;Locus_id=Os12g0160100;Note=Conserved hypothetical protein.;Transcript_evidence=AK064766 (DDBJ%2C Best hit);ORF_evidence=A2ZIA8 (UniProt);NIAS_FLcDNA=J013000A01;Expression=AK064766;TENOR=Os12t0160100-01;KEGG=Os12t0160100-01
Chr12	irgsp1_rep	five_prime_UTR	2996185	2996212	.	+	.	Parent=Os12t0160100-01
Chr12	irgsp1_rep	CDS	2996213	2996623	.	+	0	Parent=Os12t0160100-01
Chr12	irgsp1_rep	three_prime_UTR	2996624	2996805	.	+	.	Parent=Os12t0160100-01
Chr12	irgsp1_rep	mRNA	3007925	3009773	.	-	.	ID=Os12t0160200-00;Name=Os12t0160200-00;Locus_id=Os12g0160200;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001176804.1 (RefSeq);TENOR=Os12t0160200-00;KEGG=Os12t0160200-00
Chr12	irgsp1_rep	CDS	3009534	3009773	.	-	0	Parent=Os12t0160200-00
Chr12	irgsp1_rep	CDS	3009349	3009429	.	-	0	Parent=Os12t0160200-00
Chr12	irgsp1_rep	CDS	3008759	3008936	.	-	0	Parent=Os12t0160200-00
Chr12	irgsp1_rep	CDS	3007925	3008151	.	-	2	Parent=Os12t0160200-00
Chr12	irgsp1_rep	mRNA	3013268	3015766	.	+	.	ID=Os12t0160300-01;Name=Os12t0160300-01;Locus_id=Os12g0160300;Note=Conserved hypothetical protein.;Transcript_evidence=AK103168 (DDBJ%2C Best hit);ORF_evidence=B9GBZ9 (UniProt);NIAS_FLcDNA=J033121F11;TENOR=Os12t0160300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	3013268	3013302	.	+	.	Parent=Os12t0160300-01
Chr12	irgsp1_rep	CDS	3013303	3013794	.	+	0	Parent=Os12t0160300-01
Chr12	irgsp1_rep	three_prime_UTR	3013795	3014012	.	+	.	Parent=Os12t0160300-01
Chr12	irgsp1_rep	three_prime_UTR	3014136	3014213	.	+	.	Parent=Os12t0160300-01
Chr12	irgsp1_rep	three_prime_UTR	3014314	3014574	.	+	.	Parent=Os12t0160300-01
Chr12	irgsp1_rep	three_prime_UTR	3014646	3015235	.	+	.	Parent=Os12t0160300-01
Chr12	irgsp1_rep	three_prime_UTR	3015320	3015766	.	+	.	Parent=Os12t0160300-01
Chr12	irgsp1_rep	mRNA	3024060	3029390	.	+	.	ID=Os12t0160400-01;Name=Os12t0160400-01;Locus_id=Os12g0160400;Oryzabase Gene Symbol Synonym(s)=OsbHLH150;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 150;Note=Basic helix-loop-helix dimerisation region bHLH domain containing protein.;Transcript_evidence=AK074015 (DDBJ%2C Best hit);ORF_evidence=A2ZIB1 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=J033074F23;Oryzabase=15425;Expression=AK074015;TENOR=Os12t0160400-01;KEGG=Os12t0160400-01
Chr12	irgsp1_rep	five_prime_UTR	3024060	3024381	.	+	.	Parent=Os12t0160400-01
Chr12	irgsp1_rep	CDS	3024382	3024473	.	+	0	Parent=Os12t0160400-01
Chr12	irgsp1_rep	CDS	3024902	3025048	.	+	1	Parent=Os12t0160400-01
Chr12	irgsp1_rep	CDS	3025178	3025259	.	+	1	Parent=Os12t0160400-01
Chr12	irgsp1_rep	CDS	3025752	3025793	.	+	0	Parent=Os12t0160400-01
Chr12	irgsp1_rep	CDS	3025881	3025940	.	+	0	Parent=Os12t0160400-01
Chr12	irgsp1_rep	CDS	3026381	3028060	.	+	0	Parent=Os12t0160400-01
Chr12	irgsp1_rep	CDS	3028190	3028291	.	+	0	Parent=Os12t0160400-01
Chr12	irgsp1_rep	CDS	3028412	3028555	.	+	0	Parent=Os12t0160400-01
Chr12	irgsp1_rep	CDS	3028655	3028780	.	+	0	Parent=Os12t0160400-01
Chr12	irgsp1_rep	CDS	3028884	3029051	.	+	0	Parent=Os12t0160400-01
Chr12	irgsp1_rep	three_prime_UTR	3029052	3029390	.	+	.	Parent=Os12t0160400-01
Chr12	irgsp1_rep	mRNA	3029682	3034635	.	-	.	ID=Os12t0160500-01;Name=Os12t0160500-01;Locus_id=Os12g0160500;Oryzabase Gene Symbol Synonym(s)=OsBLH1;Oryzabase Gene Name Synonym(s)=BEL1-like homeodomain gene 1;Note=Similar to Associated with HOX family protein%2C expressed.;Transcript_evidence=AK120844 (DDBJ%2C Best hit);ORF_evidence=Q2QXE2 (UniProt);InterPro=POX (IPR006563);NIAS_FLcDNA=J023022M14;Oryzabase=11754;TENOR=Os12t0160500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	3034435	3034635	.	-	.	Parent=Os12t0160500-01
Chr12	irgsp1_rep	five_prime_UTR	3033784	3033914	.	-	.	Parent=Os12t0160500-01
Chr12	irgsp1_rep	CDS	3033067	3033783	.	-	0	Parent=Os12t0160500-01
Chr12	irgsp1_rep	CDS	3031435	3031854	.	-	0	Parent=Os12t0160500-01
Chr12	irgsp1_rep	CDS	3030710	3030770	.	-	0	Parent=Os12t0160500-01
Chr12	irgsp1_rep	CDS	3030477	3030640	.	-	2	Parent=Os12t0160500-01
Chr12	irgsp1_rep	three_prime_UTR	3029682	3030476	.	-	.	Parent=Os12t0160500-01
Chr12	irgsp1_rep	mRNA	3029600	3034635	.	-	.	ID=Os12t0160500-02;Name=Os12t0160500-02;Locus_id=Os12g0160500;Oryzabase Gene Symbol Synonym(s)=OsBLH1;Oryzabase Gene Name Synonym(s)=BEL1-like homeodomain gene 1;Note=Similar to Associated with HOX family protein%2C expressed.;Transcript_evidence=AK120813 (DDBJ%2C Best hit);ORF_evidence=Q2QXE1 (UniProt);InterPro=POX (IPR006563);NIAS_FLcDNA=J023014M03;Oryzabase=11754;Expression=AK120813;TENOR=Os12t0160500-02;KEGG=Os12t0160500-02
Chr12	irgsp1_rep	five_prime_UTR	3034435	3034635	.	-	.	Parent=Os12t0160500-02
Chr12	irgsp1_rep	five_prime_UTR	3033784	3033914	.	-	.	Parent=Os12t0160500-02
Chr12	irgsp1_rep	CDS	3033067	3033783	.	-	0	Parent=Os12t0160500-02
Chr12	irgsp1_rep	CDS	3031435	3031854	.	-	0	Parent=Os12t0160500-02
Chr12	irgsp1_rep	CDS	3030477	3030770	.	-	0	Parent=Os12t0160500-02
Chr12	irgsp1_rep	three_prime_UTR	3029600	3030476	.	-	.	Parent=Os12t0160500-02
Chr12	irgsp1_rep	mRNA	3029761	3033501	.	+	.	ID=Os12t0160650-00;Name=Os12t0160650-00;Locus_id=Os12g0160650;Note=Hypothetical protein.;Transcript_evidence=tplb0025a22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0160650-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	3029761	3030656	.	+	.	Parent=Os12t0160650-00
Chr12	irgsp1_rep	five_prime_UTR	3030725	3030774	.	+	.	Parent=Os12t0160650-00
Chr12	irgsp1_rep	CDS	3030775	3030779	.	+	0	Parent=Os12t0160650-00
Chr12	irgsp1_rep	CDS	3031443	3031862	.	+	1	Parent=Os12t0160650-00
Chr12	irgsp1_rep	CDS	3033076	3033501	.	+	1	Parent=Os12t0160650-00
Chr12	irgsp1_rep	mRNA	3059460	3063694	.	+	.	ID=Os12t0160900-01;Name=Os12t0160900-01;Locus_id=Os12g0160900;Note=FAR1 domain containing protein.;Transcript_evidence=AK121495 (DDBJ%2C Best hit),AK065838 (DDBJ%2C Best hit);ORF_evidence=B8BNA6 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=FAR1 DNA binding domain (IPR004330),Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);NIAS_FLcDNA=J033001A07,J013039J03;Expression=AK121495;TENOR=Os12t0160900-01;KEGG=Os12t0160900-01
Chr12	irgsp1_rep	five_prime_UTR	3059460	3059861	.	+	.	Parent=Os12t0160900-01
Chr12	irgsp1_rep	five_prime_UTR	3060245	3060246	.	+	.	Parent=Os12t0160900-01
Chr12	irgsp1_rep	CDS	3060247	3062425	.	+	0	Parent=Os12t0160900-01
Chr12	irgsp1_rep	CDS	3062516	3062646	.	+	2	Parent=Os12t0160900-01
Chr12	irgsp1_rep	CDS	3062744	3062824	.	+	0	Parent=Os12t0160900-01
Chr12	irgsp1_rep	CDS	3063403	3063465	.	+	0	Parent=Os12t0160900-01
Chr12	irgsp1_rep	three_prime_UTR	3063466	3063694	.	+	.	Parent=Os12t0160900-01
Chr12	irgsp1_rep	mRNA	3068752	3070072	.	+	.	ID=Os12t0161100-00;Name=Os12t0161100-00;Locus_id=Os12g0161100;Oryzabase Gene Symbol Synonym(s)=OsPUB37;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 37%2C U-box protein 37;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=tplb0005p07 (Wheat FLcDNA);ORF_evidence=NP_001147860.1 (RefSeq);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842);InterPro=U box domain (IPR003613),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);Oryzabase=17829;TENOR=Os12t0161100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	3068752	3068752	.	+	.	Parent=Os12t0161100-00
Chr12	irgsp1_rep	CDS	3068753	3070072	.	+	0	Parent=Os12t0161100-00
Chr12	irgsp1_rep	mRNA	3080999	3081520	.	-	.	ID=Os12t0161350-00;Name=Os12t0161350-00;Locus_id=Os12g0161350;Note=Conserved hypothetical protein.;Transcript_evidence=EU953213 (DDBJ);ORF_evidence=Q2QRE9 (UniProt);TENOR=Os12t0161350-00
Chr12	irgsp1_rep	five_prime_UTR	3081492	3081520	.	-	.	Parent=Os12t0161350-00
Chr12	irgsp1_rep	CDS	3081414	3081491	.	-	0	Parent=Os12t0161350-00
Chr12	irgsp1_rep	CDS	3081212	3081301	.	-	0	Parent=Os12t0161350-00
Chr12	irgsp1_rep	three_prime_UTR	3080999	3081211	.	-	.	Parent=Os12t0161350-00
Chr12	irgsp1_rep	mRNA	3087296	3091456	.	-	.	ID=Os12t0161500-01;Name=Os12t0161500-01;Locus_id=Os12g0161500;Note=Conserved hypothetical protein.;Transcript_evidence=AK064192 (DDBJ%2C Best hit);ORF_evidence=Q2QXD1 (UniProt);NIAS_FLcDNA=002-104-C10;TENOR=Os12t0161500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	3091455	3091456	.	-	.	Parent=Os12t0161500-01
Chr12	irgsp1_rep	CDS	3090676	3091454	.	-	0	Parent=Os12t0161500-01
Chr12	irgsp1_rep	CDS	3090371	3090583	.	-	1	Parent=Os12t0161500-01
Chr12	irgsp1_rep	CDS	3090148	3090272	.	-	1	Parent=Os12t0161500-01
Chr12	irgsp1_rep	CDS	3087752	3088242	.	-	2	Parent=Os12t0161500-01
Chr12	irgsp1_rep	three_prime_UTR	3087296	3087751	.	-	.	Parent=Os12t0161500-01
Chr12	irgsp1_rep	mRNA	3100851	3110416	.	-	.	ID=Os12t0161700-01;Name=Os12t0161700-01;Locus_id=Os12g0161700;Note=Conserved hypothetical protein.;Transcript_evidence=AK106794 (DDBJ%2C Best hit);ORF_evidence=A3CF69 (UniProt);NIAS_FLcDNA=002-116-B02;TENOR=Os12t0161700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	3110206	3110416	.	-	.	Parent=Os12t0161700-01
Chr12	irgsp1_rep	CDS	3110114	3110205	.	-	0	Parent=Os12t0161700-01
Chr12	irgsp1_rep	CDS	3102137	3102349	.	-	1	Parent=Os12t0161700-01
Chr12	irgsp1_rep	CDS	3101923	3102047	.	-	1	Parent=Os12t0161700-01
Chr12	irgsp1_rep	CDS	3101180	3101664	.	-	2	Parent=Os12t0161700-01
Chr12	irgsp1_rep	three_prime_UTR	3100851	3101179	.	-	.	Parent=Os12t0161700-01
Chr12	irgsp1_rep	mRNA	3118079	3124707	.	-	.	ID=Os12t0161900-01;Name=Os12t0161900-01;Locus_id=Os12g0161900;Note=Hypothetical conserved gene.;Transcript_evidence=AK242757 (DDBJ%2C Best hit);ORF_evidence=Q2QXC7 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-type%2C conserved site (IPR019786);NIAS_FLcDNA=J090051E14;TENOR=Os12t0161900-01;KEGG=Os12t0161900-01
Chr12	irgsp1_rep	five_prime_UTR	3124383	3124707	.	-	.	Parent=Os12t0161900-01
Chr12	irgsp1_rep	CDS	3124380	3124382	.	-	0	Parent=Os12t0161900-01
Chr12	irgsp1_rep	CDS	3121487	3121572	.	-	0	Parent=Os12t0161900-01
Chr12	irgsp1_rep	CDS	3119800	3121026	.	-	1	Parent=Os12t0161900-01
Chr12	irgsp1_rep	CDS	3119508	3119720	.	-	1	Parent=Os12t0161900-01
Chr12	irgsp1_rep	CDS	3119304	3119428	.	-	1	Parent=Os12t0161900-01
Chr12	irgsp1_rep	CDS	3118849	3119067	.	-	2	Parent=Os12t0161900-01
Chr12	irgsp1_rep	CDS	3118265	3118767	.	-	2	Parent=Os12t0161900-01
Chr12	irgsp1_rep	three_prime_UTR	3118079	3118264	.	-	.	Parent=Os12t0161900-01
Chr12	irgsp1_rep	mRNA	3130063	3131709	.	-	.	ID=Os12t0162100-01;Name=Os12t0162100-01;Locus_id=Os12g0162100;CGSNL Gene Symbol=WNK9;CGSNL Gene Name=WITH NO LYSINE KINASE 9;Oryzabase Gene Symbol Synonym(s)=OsWNK9;Oryzabase Gene Name Synonym(s)=With No Lysine kinase 9%2C WNK protein kinase 9%2C WNK kinase 9;Note=Similar to cDNA clone:J033067N18%2C full insert sequence.;Transcript_evidence=AK062812 (DDBJ%2C Best hit);ORF_evidence=B7EMN3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-107-E03;Oryzabase=20444;Expression=AK062812;TENOR=Os12t0162100-01;KEGG=Os12t0162100-01 (EC:2.7.11.1)
Chr12	irgsp1_rep	five_prime_UTR	3131642	3131709	.	-	.	Parent=Os12t0162100-01
Chr12	irgsp1_rep	CDS	3131543	3131641	.	-	0	Parent=Os12t0162100-01
Chr12	irgsp1_rep	CDS	3131372	3131409	.	-	0	Parent=Os12t0162100-01
Chr12	irgsp1_rep	CDS	3130632	3130862	.	-	1	Parent=Os12t0162100-01
Chr12	irgsp1_rep	CDS	3130063	3130264	.	-	1	Parent=Os12t0162100-01
Chr12	irgsp1_rep	mRNA	3128685	3131708	.	-	.	ID=Os12t0162100-02;Name=Os12t0162100-02;Locus_id=Os12g0162100;RAP-DB Gene Symbol Synonym(s)=OsWNK9;RAP-DB Gene Name Synonym(s)=With No Lysine kinase 9%2C  WNK kinase 9;CGSNL Gene Symbol=WNK9;CGSNL Gene Name=WITH NO LYSINE KINASE 9;Oryzabase Gene Symbol Synonym(s)=OsWNK9;Oryzabase Gene Name Synonym(s)=With No Lysine kinase 9%2C WNK protein kinase 9%2C WNK kinase 9;Note=WNK (With No Lysine) kinase%2C Ser/thr protein kinase family member%2C Regulation of salt and drought response;Transcript_evidence=AK073772;ORF_evidence=Q2QXC6;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),Protein kinase domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J033067N18;Manual Curation=March 28%2C 2018;Literature_PMID=29576087,26414948;Oryzabase=20444;Expression=AK073772;TENOR=Os12t0162100-02;Subcellular location=nucleus (GO:0005634)
Chr12	irgsp1_rep	five_prime_UTR	3131642	3131708	.	-	.	Parent=Os12t0162100-02
Chr12	irgsp1_rep	CDS	3131543	3131641	.	-	0	Parent=Os12t0162100-02
Chr12	irgsp1_rep	CDS	3131372	3131409	.	-	0	Parent=Os12t0162100-02
Chr12	irgsp1_rep	CDS	3130632	3130862	.	-	1	Parent=Os12t0162100-02
Chr12	irgsp1_rep	CDS	3130047	3130264	.	-	1	Parent=Os12t0162100-02
Chr12	irgsp1_rep	CDS	3129667	3129824	.	-	2	Parent=Os12t0162100-02
Chr12	irgsp1_rep	CDS	3129300	3129582	.	-	0	Parent=Os12t0162100-02
Chr12	irgsp1_rep	CDS	3128997	3129223	.	-	2	Parent=Os12t0162100-02
Chr12	irgsp1_rep	three_prime_UTR	3128685	3128996	.	-	.	Parent=Os12t0162100-02
Chr12	irgsp1_rep	mRNA	3145079	3149502	.	-	.	ID=Os12t0162400-01;Name=Os12t0162400-01;Locus_id=Os12g0162400;CGSNL Gene Symbol=CBL6;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsCBL6;Oryzabase Gene Name Synonym(s)=Calcineurin B-like protein 6;Note=Similar to Calcineurin B-like protein 3 (SOS3-like calcium binding protein 6).;Transcript_evidence=AK111505 (DDBJ%2C Best hit);ORF_evidence=Q3HRP1 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Recoverin (IPR001125),Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J013001C11;Oryzabase=6103;Expression=AK111505;TENOR=Os12t0162400-01;KEGG=Os12t0162400-01
Chr12	irgsp1_rep	five_prime_UTR	3149418	3149502	.	-	.	Parent=Os12t0162400-01
Chr12	irgsp1_rep	five_prime_UTR	3148987	3149036	.	-	.	Parent=Os12t0162400-01
Chr12	irgsp1_rep	CDS	3148863	3148986	.	-	0	Parent=Os12t0162400-01
Chr12	irgsp1_rep	CDS	3148639	3148721	.	-	2	Parent=Os12t0162400-01
Chr12	irgsp1_rep	CDS	3148462	3148521	.	-	0	Parent=Os12t0162400-01
Chr12	irgsp1_rep	CDS	3146992	3147100	.	-	0	Parent=Os12t0162400-01
Chr12	irgsp1_rep	CDS	3146467	3146519	.	-	2	Parent=Os12t0162400-01
Chr12	irgsp1_rep	CDS	3146022	3146102	.	-	0	Parent=Os12t0162400-01
Chr12	irgsp1_rep	CDS	3145813	3145925	.	-	0	Parent=Os12t0162400-01
Chr12	irgsp1_rep	CDS	3145337	3145394	.	-	1	Parent=Os12t0162400-01
Chr12	irgsp1_rep	three_prime_UTR	3145079	3145336	.	-	.	Parent=Os12t0162400-01
Chr12	irgsp1_rep	mRNA	3145809	3148986	.	+	.	ID=Os12t0162450-00;Name=Os12t0162450-00;Locus_id=Os12g0162450;Note=Hypothetical gene.;Transcript_evidence=BT018557 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0162450-00;KEGG=Os12t0162450-00
Chr12	irgsp1_rep	five_prime_UTR	3145809	3145905	.	+	.	Parent=Os12t0162450-00
Chr12	irgsp1_rep	five_prime_UTR	3146008	3146153	.	+	.	Parent=Os12t0162450-00
Chr12	irgsp1_rep	five_prime_UTR	3146979	3147082	.	+	.	Parent=Os12t0162450-00
Chr12	irgsp1_rep	five_prime_UTR	3148441	3148474	.	+	.	Parent=Os12t0162450-00
Chr12	irgsp1_rep	CDS	3148475	3148508	.	+	0	Parent=Os12t0162450-00
Chr12	irgsp1_rep	CDS	3148623	3148716	.	+	2	Parent=Os12t0162450-00
Chr12	irgsp1_rep	CDS	3148854	3148986	.	+	1	Parent=Os12t0162450-00
Chr12	irgsp1_rep	mRNA	3153113	3156795	.	+	.	ID=Os12t0162500-01;Name=Os12t0162500-01;Locus_id=Os12g0162500;CGSNL Gene Symbol=RSG;CGSNL Gene Name=REPRESSION OF SHOOT GROWTH;Oryzabase Gene Symbol Synonym(s)=OsbZIP84%2C BZIP84;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 84%2C repression of shoot growth;Note=Similar to BZIP-like protein.;Transcript_evidence=AK065995 (DDBJ%2C Best hit);ORF_evidence=B6SK78 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);NIAS_FLcDNA=J013048G15;Oryzabase=10163;Expression=AK065995;TENOR=Os12t0162500-01;KEGG=Os12t0162500-01
Chr12	irgsp1_rep	five_prime_UTR	3153113	3153168	.	+	.	Parent=Os12t0162500-01
Chr12	irgsp1_rep	CDS	3153169	3153671	.	+	0	Parent=Os12t0162500-01
Chr12	irgsp1_rep	CDS	3153945	3154077	.	+	1	Parent=Os12t0162500-01
Chr12	irgsp1_rep	CDS	3155963	3156047	.	+	0	Parent=Os12t0162500-01
Chr12	irgsp1_rep	CDS	3156271	3156536	.	+	2	Parent=Os12t0162500-01
Chr12	irgsp1_rep	three_prime_UTR	3156537	3156795	.	+	.	Parent=Os12t0162500-01
Chr12	irgsp1_rep	mRNA	3170547	3172120	.	+	.	ID=Os12t0162700-00;Name=Os12t0162700-00;Locus_id=Os12g0162700;CGSNL Gene Symbol=GRAS55;CGSNL Gene Name=GRAS PROTEIN 55;Oryzabase Gene Symbol Synonym(s)=OsGRAS-55%2C OsGRAS55%2C GRAS-55;Oryzabase Gene Name Synonym(s)=GRAS protein 55;Note=Similar to GRAS family transcription factor containing protein.;Transcript_evidence=BT083778 (DDBJ);ORF_evidence=Q2QXC1 (UniProt);InterPro=Transcription factor GRAS (IPR005202);Oryzabase=22806;TENOR=Os12t0162700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	3170547	3171656	.	+	0	Parent=Os12t0162700-00
Chr12	irgsp1_rep	three_prime_UTR	3171657	3172120	.	+	.	Parent=Os12t0162700-00
Chr12	irgsp1_rep	mRNA	3176197	3177724	.	+	.	ID=Os12t0162800-01;Name=Os12t0162800-01;Locus_id=Os12g0162800;Note=Domain of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK108059 (DDBJ%2C Best hit);ORF_evidence=Q2QXC0 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=002-138-A11;TENOR=Os12t0162800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	3176197	3177724	.	+	0	Parent=Os12t0162800-01
Chr12	irgsp1_rep	mRNA	3179975	3184795	.	-	.	ID=Os12t0162900-01;Name=Os12t0162900-01;Locus_id=Os12g0162900;Note=Hypothetical conserved gene.;Transcript_evidence=AK242858 (DDBJ%2C Best hit);ORF_evidence=Q2QXB9 (UniProt);InterPro=Domain of unknown function DUF88 (IPR021139);NIAS_FLcDNA=J090073L16;TENOR=Os12t0162900-01;KEGG=Os12t0162900-01
Chr12	irgsp1_rep	five_prime_UTR	3184719	3184795	.	-	.	Parent=Os12t0162900-01
Chr12	irgsp1_rep	CDS	3184349	3184718	.	-	0	Parent=Os12t0162900-01
Chr12	irgsp1_rep	CDS	3181857	3183480	.	-	2	Parent=Os12t0162900-01
Chr12	irgsp1_rep	CDS	3180315	3181293	.	-	1	Parent=Os12t0162900-01
Chr12	irgsp1_rep	three_prime_UTR	3179975	3180314	.	-	.	Parent=Os12t0162900-01
Chr12	irgsp1_rep	mRNA	3186847	3187527	.	-	.	ID=Os12t0163000-00;Name=Os12t0163000-00;Locus_id=Os12g0163000;CGSNL Gene Symbol=CNGC16;CGSNL Gene Name=CYCLIC NUCLEOTIDE GATED CHANNEL 16;Oryzabase Gene Symbol Synonym(s)=OsCNGC16%2C OsCNGC8%2C OsSTA273;Oryzabase Gene Name Synonym(s)=Cyclic nucleotide gated channel 16%2C Cyclic nucleotide-gated ion channel 8;Note=Similar to CNGC18 (CYCLIC NUCLEOTIDE-GATED CHANNEL 18)%3B calmodulin binding / cyclic nucleotide binding / ion channel.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_196991.1 (RefSeq);InterPro=Cyclic nucleotide-binding domain (IPR000595),RmlC-like jelly roll fold (IPR014710),Cyclic nucleotide-binding-like (IPR018490);Oryzabase=15489;TENOR=Os12t0163000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	3186847	3187527	.	-	0	Parent=Os12t0163000-00
Chr12	irgsp1_rep	mRNA	3187039	3190106	.	+	.	ID=Os12t0163050-00;Name=Os12t0163050-00;Locus_id=Os12g0163050;Note=Hypothetical protein.;Transcript_evidence=tplb0021e03 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0163050-00
Chr12	irgsp1_rep	CDS	3187039	3187908	.	+	0	Parent=Os12t0163050-00
Chr12	irgsp1_rep	three_prime_UTR	3187909	3188231	.	+	.	Parent=Os12t0163050-00
Chr12	irgsp1_rep	three_prime_UTR	3189021	3189226	.	+	.	Parent=Os12t0163050-00
Chr12	irgsp1_rep	three_prime_UTR	3189734	3190106	.	+	.	Parent=Os12t0163050-00
Chr12	irgsp1_rep	mRNA	3188365	3190071	.	-	.	ID=Os12t0163100-00;Name=Os12t0163100-00;Locus_id=Os12g0163100;CGSNL Gene Symbol=CNGC16;CGSNL Gene Name=CYCLIC NUCLEOTIDE GATED CHANNEL 16;Oryzabase Gene Symbol Synonym(s)=OsCNGC16%2C OsCNGC8%2C OsSTA273;Oryzabase Gene Name Synonym(s)=Cyclic nucleotide gated channel 16%2C Cyclic nucleotide-gated ion channel 8;Note=Similar to CNGC18 (CYCLIC NUCLEOTIDE-GATED CHANNEL 18)%3B calmodulin binding / cyclic nucleotide binding / ion channel.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_196991.1 (RefSeq);GO=Biological Process: ion transport (GO:0006811),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: ion channel activity (GO:0005216);InterPro=Ion transport (IPR005821);Oryzabase=15489;TENOR=Os12t0163100-00
Chr12	irgsp1_rep	CDS	3189784	3190071	.	-	0	Parent=Os12t0163100-00
Chr12	irgsp1_rep	CDS	3189062	3189274	.	-	0	Parent=Os12t0163100-00
Chr12	irgsp1_rep	CDS	3188365	3188685	.	-	0	Parent=Os12t0163100-00
Chr12	irgsp1_rep	mRNA	3201632	3207773	.	+	.	ID=Os12t0163200-01;Name=Os12t0163200-01;Locus_id=Os12g0163200;Note=Uncharacterised protein family UPF0120 domain containing protein.;Transcript_evidence=AK070504 (DDBJ%2C Best hit);ORF_evidence=B9GC09 (UniProt);InterPro=Uncharacterised protein family UPF0120 (IPR005343);NIAS_FLcDNA=J023054G20;Expression=AK070504;TENOR=Os12t0163200-01;KEGG=Os12t0163200-01
Chr12	irgsp1_rep	five_prime_UTR	3201632	3201736	.	+	.	Parent=Os12t0163200-01
Chr12	irgsp1_rep	CDS	3201737	3201848	.	+	0	Parent=Os12t0163200-01
Chr12	irgsp1_rep	CDS	3201966	3202041	.	+	2	Parent=Os12t0163200-01
Chr12	irgsp1_rep	CDS	3202392	3202494	.	+	1	Parent=Os12t0163200-01
Chr12	irgsp1_rep	CDS	3203059	3203110	.	+	0	Parent=Os12t0163200-01
Chr12	irgsp1_rep	CDS	3203189	3203283	.	+	2	Parent=Os12t0163200-01
Chr12	irgsp1_rep	CDS	3203653	3203718	.	+	0	Parent=Os12t0163200-01
Chr12	irgsp1_rep	CDS	3203860	3204369	.	+	0	Parent=Os12t0163200-01
Chr12	irgsp1_rep	CDS	3204972	3205271	.	+	0	Parent=Os12t0163200-01
Chr12	irgsp1_rep	CDS	3205817	3206143	.	+	0	Parent=Os12t0163200-01
Chr12	irgsp1_rep	CDS	3206498	3206704	.	+	0	Parent=Os12t0163200-01
Chr12	irgsp1_rep	CDS	3206928	3207026	.	+	0	Parent=Os12t0163200-01
Chr12	irgsp1_rep	CDS	3207143	3207201	.	+	0	Parent=Os12t0163200-01
Chr12	irgsp1_rep	CDS	3207279	3207282	.	+	1	Parent=Os12t0163200-01
Chr12	irgsp1_rep	three_prime_UTR	3207283	3207773	.	+	.	Parent=Os12t0163200-01
Chr12	irgsp1_rep	mRNA	3203893	3206539	.	-	.	ID=Os12t0163250-01;Name=Os12t0163250-01;Locus_id=Os12g0163250;Note=Non-protein coding transcript.;Transcript_evidence=AK101255 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J033032G09;TENOR=Os12t0163250-01
Chr12	irgsp1_rep	exon	3206498	3206539	.	-	.	Parent=Os12t0163250-01
Chr12	irgsp1_rep	exon	3205817	3206143	.	-	.	Parent=Os12t0163250-01
Chr12	irgsp1_rep	exon	3204972	3205271	.	-	.	Parent=Os12t0163250-01
Chr12	irgsp1_rep	exon	3203893	3204369	.	-	.	Parent=Os12t0163250-01
Chr12	irgsp1_rep	mRNA	3208607	3211741	.	-	.	ID=Os12t0163300-01;Name=Os12t0163300-01;Locus_id=Os12g0163300;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK069765 (DDBJ%2C Best hit);ORF_evidence=B6UH29 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=PBS lyase HEAT-like repeat (IPR004155),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023029O14;Expression=AK069765;TENOR=Os12t0163300-01;KEGG=Os12t0163300-01 (EC:1.14.99.29)
Chr12	irgsp1_rep	five_prime_UTR	3211614	3211741	.	-	.	Parent=Os12t0163300-01
Chr12	irgsp1_rep	five_prime_UTR	3210781	3210813	.	-	.	Parent=Os12t0163300-01
Chr12	irgsp1_rep	CDS	3210609	3210780	.	-	0	Parent=Os12t0163300-01
Chr12	irgsp1_rep	CDS	3210339	3210472	.	-	2	Parent=Os12t0163300-01
Chr12	irgsp1_rep	CDS	3209951	3210177	.	-	0	Parent=Os12t0163300-01
Chr12	irgsp1_rep	CDS	3209726	3209864	.	-	1	Parent=Os12t0163300-01
Chr12	irgsp1_rep	CDS	3209253	3209379	.	-	0	Parent=Os12t0163300-01
Chr12	irgsp1_rep	CDS	3209047	3209165	.	-	2	Parent=Os12t0163300-01
Chr12	irgsp1_rep	CDS	3208927	3208968	.	-	0	Parent=Os12t0163300-01
Chr12	irgsp1_rep	three_prime_UTR	3208607	3208926	.	-	.	Parent=Os12t0163300-01
Chr12	irgsp1_rep	mRNA	3212528	3217692	.	-	.	ID=Os12t0163400-01;Name=Os12t0163400-01;Locus_id=Os12g0163400;Oryzabase Gene Symbol Synonym(s)=OsTLP4%2C OsTLP14%2C OsFbox645%2C Os_F0315;Oryzabase Gene Name Synonym(s)=tubby-like protein 4%2C tubby-like protein 14%2C F-box protein 645;Note=Tubby family protein.;Transcript_evidence=AK102298 (DDBJ%2C Best hit);ORF_evidence=C6F1L9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Tubby%2C C-terminal (IPR000007),F-box domain%2C cyclin-like (IPR001810),Tubby%2C C-terminal%2C conserved site (IPR018066),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033089L13;Oryzabase=14706;Expression=AK102298;TENOR=Os12t0163400-01;KEGG=Os12t0163400-01
Chr12	irgsp1_rep	five_prime_UTR	3217572	3217692	.	-	.	Parent=Os12t0163400-01
Chr12	irgsp1_rep	five_prime_UTR	3217440	3217491	.	-	.	Parent=Os12t0163400-01
Chr12	irgsp1_rep	CDS	3217074	3217439	.	-	0	Parent=Os12t0163400-01
Chr12	irgsp1_rep	CDS	3216790	3216877	.	-	0	Parent=Os12t0163400-01
Chr12	irgsp1_rep	CDS	3213806	3213938	.	-	2	Parent=Os12t0163400-01
Chr12	irgsp1_rep	CDS	3212957	3213707	.	-	1	Parent=Os12t0163400-01
Chr12	irgsp1_rep	three_prime_UTR	3212528	3212956	.	-	.	Parent=Os12t0163400-01
Chr12	irgsp1_rep	mRNA	3219061	3222884	.	-	.	ID=Os12t0163500-01;Name=Os12t0163500-01;Locus_id=Os12g0163500;CGSNL Gene Symbol=MSL40;CGSNL Gene Name=MYB/SANT-LIKE 40;Oryzabase Gene Symbol Synonym(s)=OsMSL40%2C DLN253%2C OsDLN253%2C OsGTgamma-3%2C GTgamma-3;Oryzabase Gene Name Synonym(s)=Myb/SANT-LIKE 40%2C DLN repressor 253%2C DLN motif protein 253%2C GT factor gamma-3;Note=Homeodomain-like containing protein.;Transcript_evidence=AK103122 (DDBJ%2C Best hit);ORF_evidence=A2ZID3 (UniProt);GO=Molecular Function: DNA binding (GO:0003677);InterPro=SANT domain%2C DNA binding (IPR001005);NIAS_FLcDNA=J033119K12;Oryzabase=22971;Expression=AK103122;TENOR=Os12t0163500-01;KEGG=Os12t0163500-01
Chr12	irgsp1_rep	five_prime_UTR	3222767	3222884	.	-	.	Parent=Os12t0163500-01
Chr12	irgsp1_rep	five_prime_UTR	3222229	3222328	.	-	.	Parent=Os12t0163500-01
Chr12	irgsp1_rep	CDS	3220930	3222228	.	-	0	Parent=Os12t0163500-01
Chr12	irgsp1_rep	three_prime_UTR	3220894	3220929	.	-	.	Parent=Os12t0163500-01
Chr12	irgsp1_rep	three_prime_UTR	3219061	3219262	.	-	.	Parent=Os12t0163500-01
Chr12	irgsp1_rep	mRNA	3219107	3221180	.	-	.	ID=Os12t0163500-02;Name=Os12t0163500-02;Locus_id=Os12g0163500;CGSNL Gene Symbol=MSL40;CGSNL Gene Name=MYB/SANT-LIKE 40;Oryzabase Gene Symbol Synonym(s)=OsMSL40%2C DLN253%2C OsDLN253%2C OsGTgamma-3%2C GTgamma-3;Oryzabase Gene Name Synonym(s)=Myb/SANT-LIKE 40%2C DLN repressor 253%2C DLN motif protein 253%2C GT factor gamma-3;Note=Similar to transcription factor.;Transcript_evidence=AK058274 (DDBJ%2C Best hit);ORF_evidence=NP_564136.1 (RefSeq);NIAS_FLcDNA=001-013-C02;Oryzabase=22971;Expression=AK058274;TENOR=Os12t0163500-02;KEGG=Os12t0163500-02
Chr12	irgsp1_rep	five_prime_UTR	3221179	3221180	.	-	.	Parent=Os12t0163500-02
Chr12	irgsp1_rep	CDS	3220930	3221178	.	-	0	Parent=Os12t0163500-02
Chr12	irgsp1_rep	three_prime_UTR	3220894	3220929	.	-	.	Parent=Os12t0163500-02
Chr12	irgsp1_rep	three_prime_UTR	3219107	3219262	.	-	.	Parent=Os12t0163500-02
Chr12	irgsp1_rep	mRNA	3220892	3222221	.	+	.	ID=Os12t0163550-00;Name=Os12t0163550-00;Locus_id=Os12g0163550;Note=Non-protein coding transcript.;Transcript_evidence=tplb0053c24 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os12t0163550-00
Chr12	irgsp1_rep	exon	3220892	3222221	.	+	.	Parent=Os12t0163550-00
Chr12	irgsp1_rep	mRNA	3226519	3229144	.	-	.	ID=Os12t0163600-01;Name=Os12t0163600-01;Locus_id=Os12g0163600;RAP-DB Gene Symbol Synonym(s)=OsPGL1;RAP-DB Gene Name Synonym(s)=Pale Green Leaves 1;CGSNL Gene Symbol=PGL1;CGSNL Gene Name=PALE GREEN LEAVES 1;Oryzabase Gene Symbol Synonym(s)=OsPGL1;Oryzabase Gene Name Synonym(s)=Pale Green Leaves 1;Note=Pentatricopeptide repeat protein%2C Organellar RNA editing;Transcript_evidence=AK067553;ORF_evidence=Q2QXB0;GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Tetratricopeptide-like helical domain superfamily (IPR011990),DYW domain (IPR032867),Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J013108L03;Manual Curation=March 20%2C 2019;Literature_PMID=29562289;Oryzabase=22393;Expression=AK067553;TENOR=Os12t0163600-01;KEGG=Os12t0163600-01;Subcellular location=chloroplast (GO:0009507), mitochondrion (GO:0005739)
Chr12	irgsp1_rep	five_prime_UTR	3228956	3229144	.	-	.	Parent=Os12t0163600-01
Chr12	irgsp1_rep	CDS	3227141	3228955	.	-	0	Parent=Os12t0163600-01
Chr12	irgsp1_rep	three_prime_UTR	3226519	3227140	.	-	.	Parent=Os12t0163600-01
Chr12	irgsp1_rep	mRNA	3231528	3234554	.	-	.	ID=Os12t0163700-01;Name=Os12t0163700-01;Locus_id=Os12g0163700;Note=Similar to Actin 7 (Actin 2).;Transcript_evidence=AK063572 (DDBJ%2C Best hit);ORF_evidence=Q5XPX5 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Actin-like (IPR004000),Actin%2C conserved site (IPR004001);NIAS_FLcDNA=001-117-G08;Expression=AK063572;TENOR=Os12t0163700-01;KEGG=Os12t0163700-01
Chr12	irgsp1_rep	five_prime_UTR	3234481	3234554	.	-	.	Parent=Os12t0163700-01
Chr12	irgsp1_rep	five_prime_UTR	3234010	3234032	.	-	.	Parent=Os12t0163700-01
Chr12	irgsp1_rep	CDS	3233950	3234009	.	-	0	Parent=Os12t0163700-01
Chr12	irgsp1_rep	CDS	3233552	3233797	.	-	0	Parent=Os12t0163700-01
Chr12	irgsp1_rep	CDS	3233404	3233500	.	-	0	Parent=Os12t0163700-01
Chr12	irgsp1_rep	CDS	3232322	3232944	.	-	2	Parent=Os12t0163700-01
Chr12	irgsp1_rep	CDS	3231803	3231868	.	-	0	Parent=Os12t0163700-01
Chr12	irgsp1_rep	three_prime_UTR	3231528	3231802	.	-	.	Parent=Os12t0163700-01
Chr12	irgsp1_rep	mRNA	3233406	3233789	.	+	.	ID=Os12t0163750-00;Name=Os12t0163750-00;Locus_id=Os12g0163750;Note=Hypothetical protein.;Transcript_evidence=GU570135 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0163750-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	3233406	3233407	.	+	.	Parent=Os12t0163750-00
Chr12	irgsp1_rep	CDS	3233408	3233789	.	+	0	Parent=Os12t0163750-00
Chr12	irgsp1_rep	mRNA	3236058	3243704	.	-	.	ID=Os12t0163800-01;Name=Os12t0163800-01;Locus_id=Os12g0163800;CGSNL Gene Symbol=ACTPK6;CGSNL Gene Name=ACT DOMAIN CONTAINING PROTEIN KINASE 6;Oryzabase Gene Symbol Synonym(s)=OsACTPK6;Oryzabase Gene Name Synonym(s)=ACT domain containing protein kinase 6;Note=Similar to ATP binding protein.;Transcript_evidence=AK243345 (DDBJ%2C Best hit);ORF_evidence=NP_001151569.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: metabolic process (GO:0008152),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: amino acid binding (GO:0016597),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Amino acid-binding ACT (IPR002912),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J100060A02;Oryzabase=22319;TENOR=Os12t0163800-01;KEGG=Os12t0163800-01
Chr12	irgsp1_rep	five_prime_UTR	3243462	3243704	.	-	.	Parent=Os12t0163800-01
Chr12	irgsp1_rep	CDS	3243205	3243461	.	-	0	Parent=Os12t0163800-01
Chr12	irgsp1_rep	CDS	3242299	3242413	.	-	1	Parent=Os12t0163800-01
Chr12	irgsp1_rep	CDS	3241272	3241348	.	-	0	Parent=Os12t0163800-01
Chr12	irgsp1_rep	CDS	3240241	3240313	.	-	1	Parent=Os12t0163800-01
Chr12	irgsp1_rep	CDS	3239982	3240092	.	-	0	Parent=Os12t0163800-01
Chr12	irgsp1_rep	CDS	3239346	3239396	.	-	0	Parent=Os12t0163800-01
Chr12	irgsp1_rep	CDS	3239050	3239186	.	-	0	Parent=Os12t0163800-01
Chr12	irgsp1_rep	CDS	3238859	3238966	.	-	1	Parent=Os12t0163800-01
Chr12	irgsp1_rep	CDS	3238580	3238653	.	-	1	Parent=Os12t0163800-01
Chr12	irgsp1_rep	CDS	3238154	3238329	.	-	2	Parent=Os12t0163800-01
Chr12	irgsp1_rep	CDS	3237848	3237943	.	-	0	Parent=Os12t0163800-01
Chr12	irgsp1_rep	CDS	3236995	3237075	.	-	0	Parent=Os12t0163800-01
Chr12	irgsp1_rep	CDS	3236849	3236899	.	-	0	Parent=Os12t0163800-01
Chr12	irgsp1_rep	CDS	3236586	3236726	.	-	0	Parent=Os12t0163800-01
Chr12	irgsp1_rep	CDS	3236346	3236399	.	-	0	Parent=Os12t0163800-01
Chr12	irgsp1_rep	three_prime_UTR	3236058	3236345	.	-	.	Parent=Os12t0163800-01
Chr12	irgsp1_rep	mRNA	3280331	3283203	.	+	.	ID=Os12t0164300-01;Name=Os12t0164300-01;Locus_id=Os12g0164300;Oryzabase Gene Symbol Synonym(s)=OsFbox646%2C Os_F0134;Oryzabase Gene Name Synonym(s)=F-box protein 646;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK120100 (DDBJ%2C Best hit);ORF_evidence=Q2QXA1 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J013022J17;Oryzabase=17406;Expression=AK120100;TENOR=Os12t0164300-01;KEGG=Os12t0164300-01
Chr12	irgsp1_rep	five_prime_UTR	3280331	3280551	.	+	.	Parent=Os12t0164300-01
Chr12	irgsp1_rep	five_prime_UTR	3280961	3280975	.	+	.	Parent=Os12t0164300-01
Chr12	irgsp1_rep	CDS	3280976	3282148	.	+	0	Parent=Os12t0164300-01
Chr12	irgsp1_rep	CDS	3282463	3282534	.	+	0	Parent=Os12t0164300-01
Chr12	irgsp1_rep	three_prime_UTR	3282535	3282535	.	+	.	Parent=Os12t0164300-01
Chr12	irgsp1_rep	three_prime_UTR	3282670	3283203	.	+	.	Parent=Os12t0164300-01
Chr12	irgsp1_rep	mRNA	3293336	3294922	.	-	.	ID=Os12t0164450-01;Name=Os12t0164450-01;Locus_id=Os12g0164450;Note=Hypothetical gene.;Transcript_evidence=AK241669 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065192D23;TENOR=Os12t0164450-01;KEGG=Os12t0164450-01
Chr12	irgsp1_rep	five_prime_UTR	3294687	3294922	.	-	.	Parent=Os12t0164450-01
Chr12	irgsp1_rep	CDS	3293337	3294686	.	-	0	Parent=Os12t0164450-01
Chr12	irgsp1_rep	three_prime_UTR	3293336	3293336	.	-	.	Parent=Os12t0164450-01
Chr12	irgsp1_rep	mRNA	3293379	3294977	.	+	.	ID=Os12t0164600-00;Name=Os12t0164600-00;Locus_id=Os12g0164600;Oryzabase Gene Symbol Synonym(s)=OsSTA274;Note=Protein of unknown function DUF793 family protein.;Transcript_evidence=tplb0046f10 (Wheat FLcDNA);ORF_evidence=NP_001066236.1 (RefSeq);InterPro=Protein BYPASS-related (IPR008511);Oryzabase=19533;TENOR=Os12t0164600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	3293379	3293432	.	+	.	Parent=Os12t0164600-00
Chr12	irgsp1_rep	CDS	3293433	3294677	.	+	0	Parent=Os12t0164600-00
Chr12	irgsp1_rep	three_prime_UTR	3294678	3294977	.	+	.	Parent=Os12t0164600-00
Chr12	irgsp1_rep	mRNA	3296798	3302851	.	-	.	ID=Os12t0164800-01;Name=Os12t0164800-01;Locus_id=Os12g0164800;Note=Hypothetical conserved gene.;Transcript_evidence=AK242705 (DDBJ%2C Best hit);ORF_evidence=Q2QX94 (UniProt);InterPro=Protein of unknown function DUF3657 (IPR022122);NIAS_FLcDNA=J090039M08;TENOR=Os12t0164800-01;KEGG=Os12t0164800-01
Chr12	irgsp1_rep	five_prime_UTR	3302429	3302851	.	-	.	Parent=Os12t0164800-01
Chr12	irgsp1_rep	CDS	3302190	3302428	.	-	0	Parent=Os12t0164800-01
Chr12	irgsp1_rep	CDS	3301600	3301685	.	-	1	Parent=Os12t0164800-01
Chr12	irgsp1_rep	CDS	3300572	3300726	.	-	2	Parent=Os12t0164800-01
Chr12	irgsp1_rep	CDS	3300426	3300490	.	-	0	Parent=Os12t0164800-01
Chr12	irgsp1_rep	CDS	3300108	3300294	.	-	1	Parent=Os12t0164800-01
Chr12	irgsp1_rep	CDS	3299289	3299552	.	-	0	Parent=Os12t0164800-01
Chr12	irgsp1_rep	CDS	3299007	3299195	.	-	0	Parent=Os12t0164800-01
Chr12	irgsp1_rep	three_prime_UTR	3298570	3299006	.	-	.	Parent=Os12t0164800-01
Chr12	irgsp1_rep	three_prime_UTR	3298234	3298483	.	-	.	Parent=Os12t0164800-01
Chr12	irgsp1_rep	three_prime_UTR	3297894	3298151	.	-	.	Parent=Os12t0164800-01
Chr12	irgsp1_rep	three_prime_UTR	3297607	3297812	.	-	.	Parent=Os12t0164800-01
Chr12	irgsp1_rep	three_prime_UTR	3297441	3297491	.	-	.	Parent=Os12t0164800-01
Chr12	irgsp1_rep	three_prime_UTR	3296798	3297306	.	-	.	Parent=Os12t0164800-01
Chr12	irgsp1_rep	mRNA	3305271	3316472	.	-	.	ID=Os12t0165000-01;Name=Os12t0165000-01;Locus_id=Os12g0165000;Oryzabase Gene Symbol Synonym(s)=OsWD40-194;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK111883 (DDBJ%2C Best hit);ORF_evidence=NP_566246.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472),Protein of unknown function DUF3337 (IPR021772);NIAS_FLcDNA=J033060M06;Oryzabase=10875;Expression=AK111883;TENOR=Os12t0165000-01;KEGG=Os12t0165000-01
Chr12	irgsp1_rep	five_prime_UTR	3316349	3316472	.	-	.	Parent=Os12t0165000-01
Chr12	irgsp1_rep	five_prime_UTR	3315606	3315647	.	-	.	Parent=Os12t0165000-01
Chr12	irgsp1_rep	CDS	3315507	3315605	.	-	0	Parent=Os12t0165000-01
Chr12	irgsp1_rep	CDS	3315230	3315388	.	-	0	Parent=Os12t0165000-01
Chr12	irgsp1_rep	CDS	3314792	3314854	.	-	0	Parent=Os12t0165000-01
Chr12	irgsp1_rep	CDS	3314630	3314719	.	-	0	Parent=Os12t0165000-01
Chr12	irgsp1_rep	CDS	3314248	3314541	.	-	0	Parent=Os12t0165000-01
Chr12	irgsp1_rep	CDS	3314012	3314109	.	-	0	Parent=Os12t0165000-01
Chr12	irgsp1_rep	CDS	3311804	3311839	.	-	1	Parent=Os12t0165000-01
Chr12	irgsp1_rep	CDS	3311552	3311672	.	-	1	Parent=Os12t0165000-01
Chr12	irgsp1_rep	CDS	3311241	3311477	.	-	0	Parent=Os12t0165000-01
Chr12	irgsp1_rep	CDS	3310689	3310784	.	-	0	Parent=Os12t0165000-01
Chr12	irgsp1_rep	CDS	3310537	3310602	.	-	0	Parent=Os12t0165000-01
Chr12	irgsp1_rep	CDS	3310304	3310342	.	-	0	Parent=Os12t0165000-01
Chr12	irgsp1_rep	CDS	3310090	3310224	.	-	0	Parent=Os12t0165000-01
Chr12	irgsp1_rep	CDS	3309480	3309832	.	-	0	Parent=Os12t0165000-01
Chr12	irgsp1_rep	CDS	3308204	3308297	.	-	1	Parent=Os12t0165000-01
Chr12	irgsp1_rep	CDS	3306532	3306712	.	-	0	Parent=Os12t0165000-01
Chr12	irgsp1_rep	CDS	3305691	3305788	.	-	2	Parent=Os12t0165000-01
Chr12	irgsp1_rep	three_prime_UTR	3305271	3305690	.	-	.	Parent=Os12t0165000-01
Chr12	irgsp1_rep	mRNA	3305300	3310887	.	-	.	ID=Os12t0165000-02;Name=Os12t0165000-02;Locus_id=Os12g0165000;Oryzabase Gene Symbol Synonym(s)=OsWD40-194;Note=Similar to predicted protein.;Transcript_evidence=AK112045 (DDBJ%2C Best hit);ORF_evidence=E5GBR4 (UniProt);InterPro=Protein of unknown function DUF3337 (IPR021772);NIAS_FLcDNA=001-047-C06;Oryzabase=10875;Expression=AK112045;TENOR=Os12t0165000-02;KEGG=Os12t0165000-02
Chr12	irgsp1_rep	five_prime_UTR	3310785	3310887	.	-	.	Parent=Os12t0165000-02
Chr12	irgsp1_rep	CDS	3310689	3310784	.	-	0	Parent=Os12t0165000-02
Chr12	irgsp1_rep	CDS	3310537	3310602	.	-	0	Parent=Os12t0165000-02
Chr12	irgsp1_rep	CDS	3310304	3310342	.	-	0	Parent=Os12t0165000-02
Chr12	irgsp1_rep	CDS	3310124	3310219	.	-	0	Parent=Os12t0165000-02
Chr12	irgsp1_rep	three_prime_UTR	3310090	3310123	.	-	.	Parent=Os12t0165000-02
Chr12	irgsp1_rep	three_prime_UTR	3309480	3309832	.	-	.	Parent=Os12t0165000-02
Chr12	irgsp1_rep	three_prime_UTR	3308204	3308297	.	-	.	Parent=Os12t0165000-02
Chr12	irgsp1_rep	three_prime_UTR	3306532	3306712	.	-	.	Parent=Os12t0165000-02
Chr12	irgsp1_rep	three_prime_UTR	3305300	3305788	.	-	.	Parent=Os12t0165000-02
Chr12	irgsp1_rep	mRNA	3317597	3319411	.	-	.	ID=Os12t0165200-01;Name=Os12t0165200-01;Locus_id=Os12g0165200;Note=Heat shock protein Hsp20 domain containing protein.;Transcript_evidence=AK110577 (DDBJ%2C Best hit);ORF_evidence=B9GC16 (UniProt);InterPro=Heat shock protein Hsp20 (IPR002068),HSP20-like chaperone (IPR008978);NIAS_FLcDNA=002-168-E05;Expression=AK110577;TENOR=Os12t0165200-01;KEGG=Os12t0165200-01
Chr12	irgsp1_rep	five_prime_UTR	3319311	3319411	.	-	.	Parent=Os12t0165200-01
Chr12	irgsp1_rep	CDS	3319199	3319310	.	-	0	Parent=Os12t0165200-01
Chr12	irgsp1_rep	CDS	3317816	3319122	.	-	2	Parent=Os12t0165200-01
Chr12	irgsp1_rep	three_prime_UTR	3317597	3317815	.	-	.	Parent=Os12t0165200-01
Chr12	irgsp1_rep	mRNA	3317699	3319829	.	+	.	ID=Os12t0165300-01;Name=Os12t0165300-01;Locus_id=Os12g0165300;Note=Hypothetical protein.;Transcript_evidence=AK120817 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023015A03;TENOR=Os12t0165300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	3317699	3317700	.	+	.	Parent=Os12t0165300-01
Chr12	irgsp1_rep	CDS	3317701	3318645	.	+	0	Parent=Os12t0165300-01
Chr12	irgsp1_rep	three_prime_UTR	3318646	3319829	.	+	.	Parent=Os12t0165300-01
Chr12	irgsp1_rep	mRNA	3321132	3322135	.	+	.	ID=Os12t0165400-00;Name=Os12t0165400-00;Locus_id=Os12g0165400;Note=Conserved hypothetical protein.;Transcript_evidence=AK358030 (DDBJ);ORF_evidence=A2ZIE9 (UniProt);TENOR=Os12t0165400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	3321132	3321415	.	+	0	Parent=Os12t0165400-00
Chr12	irgsp1_rep	CDS	3321674	3322112	.	+	1	Parent=Os12t0165400-00
Chr12	irgsp1_rep	three_prime_UTR	3322113	3322135	.	+	.	Parent=Os12t0165400-00
Chr12	irgsp1_rep	mRNA	3322228	3324009	.	-	.	ID=Os12t0165600-01;Name=Os12t0165600-01;Locus_id=Os12g0165600;CGSNL Gene Symbol=EXO70C1;CGSNL Gene Name=EXOCYST SUBUNIT EXO70 FAMILY PROTEIN C1;Oryzabase Gene Symbol Synonym(s)=OsEXO70C1%2C OsExo70C1%2C OrysaC1_Exo70%2C OrysaE1_Exo70;Oryzabase Gene Name Synonym(s)=exocyst subunit EXO70 family protein C1;Note=Exo70 exocyst complex subunit family protein.;Transcript_evidence=AK070371 (DDBJ%2C Best hit);ORF_evidence=Q2QX89 (UniProt);GO=Biological Process: exocytosis (GO:0006887),Cellular Component: exocyst (GO:0000145);InterPro=Exo70 exocyst complex subunit (IPR004140),Cullin repeat-like-containing domain (IPR016159);NIAS_FLcDNA=J023048E13;Oryzabase=20327;Expression=AK070371;TENOR=Os12t0165600-01;KEGG=Os12t0165600-01
Chr12	irgsp1_rep	CDS	3322540	3324009	.	-	0	Parent=Os12t0165600-01
Chr12	irgsp1_rep	three_prime_UTR	3322228	3322539	.	-	.	Parent=Os12t0165600-01
Chr12	irgsp1_rep	mRNA	3325748	3328790	.	-	.	ID=Os12t0165700-01;Name=Os12t0165700-01;Locus_id=Os12g0165700;Oryzabase Gene Symbol Synonym(s)=OsTFIIS-like gene%2C OsMed26_3%2C Med26_3;Oryzabase Gene Name Synonym(s)=Transcription Elongation Factor II-S-like gene%2C Mediator 26_3;Note=Transcription elongation factor%2C TFIIS/CRSP70%2C N-terminal domain containing protein.;Transcript_evidence=AK099823 (DDBJ%2C Best hit);ORF_evidence=A2ZIF1 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Transcription elongation factor%2C TFIIS/CRSP70%2C N-terminal%2C sub-type (IPR003617),Transcription factor IIS%2C N-terminal (IPR017923);NIAS_FLcDNA=J013102D17;Oryzabase=15525;Expression=AK099823;TENOR=Os12t0165700-01;KEGG=Os12t0165700-01
Chr12	irgsp1_rep	five_prime_UTR	3328579	3328790	.	-	.	Parent=Os12t0165700-01
Chr12	irgsp1_rep	CDS	3328231	3328578	.	-	0	Parent=Os12t0165700-01
Chr12	irgsp1_rep	CDS	3328046	3328114	.	-	0	Parent=Os12t0165700-01
Chr12	irgsp1_rep	CDS	3327818	3327900	.	-	0	Parent=Os12t0165700-01
Chr12	irgsp1_rep	CDS	3327637	3327710	.	-	1	Parent=Os12t0165700-01
Chr12	irgsp1_rep	CDS	3327493	3327545	.	-	2	Parent=Os12t0165700-01
Chr12	irgsp1_rep	CDS	3327138	3327177	.	-	0	Parent=Os12t0165700-01
Chr12	irgsp1_rep	CDS	3326895	3327040	.	-	2	Parent=Os12t0165700-01
Chr12	irgsp1_rep	CDS	3326445	3326541	.	-	0	Parent=Os12t0165700-01
Chr12	irgsp1_rep	CDS	3326155	3326267	.	-	2	Parent=Os12t0165700-01
Chr12	irgsp1_rep	three_prime_UTR	3325748	3326154	.	-	.	Parent=Os12t0165700-01
Chr12	irgsp1_rep	mRNA	3326141	3327202	.	+	.	ID=Os12t0165766-00;Name=Os12t0165766-00;Locus_id=Os12g0165766;Note=Non-protein coding transcript.;Transcript_evidence=BT065504 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0165766-00
Chr12	irgsp1_rep	exon	3326141	3326267	.	+	.	Parent=Os12t0165766-00
Chr12	irgsp1_rep	exon	3326445	3326536	.	+	.	Parent=Os12t0165766-00
Chr12	irgsp1_rep	exon	3326889	3327040	.	+	.	Parent=Os12t0165766-00
Chr12	irgsp1_rep	exon	3327138	3327202	.	+	.	Parent=Os12t0165766-00
Chr12	irgsp1_rep	mRNA	3338061	3344342	.	+	.	ID=Os12t0165900-01;Name=Os12t0165900-01;Locus_id=Os12g0165900;Oryzabase Gene Symbol Synonym(s)=OsNucAP2%2C NUCAP2;Oryzabase Gene Name Synonym(s)=Nucleoporin Autopeptidase 2%2C NUCLEOPORIN AUTOPEPTIDASE 2;Note=Hypothetical conserved gene.;Transcript_evidence=AK287438 (DDBJ%2C Best hit);ORF_evidence=B9GC17 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: nuclear pore (GO:0005643);InterPro=Peptidase S59%2C nucleoporin (IPR007230);NIAS_FLcDNA=J043014M18;Oryzabase=20075;TENOR=Os12t0165900-01;KEGG=Os12t0165900-01
Chr12	irgsp1_rep	five_prime_UTR	3338061	3338350	.	+	.	Parent=Os12t0165900-01
Chr12	irgsp1_rep	CDS	3338351	3338369	.	+	0	Parent=Os12t0165900-01
Chr12	irgsp1_rep	CDS	3338727	3339185	.	+	2	Parent=Os12t0165900-01
Chr12	irgsp1_rep	CDS	3340175	3340660	.	+	2	Parent=Os12t0165900-01
Chr12	irgsp1_rep	CDS	3340821	3341036	.	+	2	Parent=Os12t0165900-01
Chr12	irgsp1_rep	CDS	3341354	3341856	.	+	2	Parent=Os12t0165900-01
Chr12	irgsp1_rep	CDS	3342000	3342066	.	+	0	Parent=Os12t0165900-01
Chr12	irgsp1_rep	CDS	3342165	3342222	.	+	2	Parent=Os12t0165900-01
Chr12	irgsp1_rep	CDS	3342511	3342649	.	+	1	Parent=Os12t0165900-01
Chr12	irgsp1_rep	CDS	3342790	3342906	.	+	0	Parent=Os12t0165900-01
Chr12	irgsp1_rep	CDS	3343019	3343196	.	+	0	Parent=Os12t0165900-01
Chr12	irgsp1_rep	CDS	3343409	3344043	.	+	2	Parent=Os12t0165900-01
Chr12	irgsp1_rep	three_prime_UTR	3344044	3344342	.	+	.	Parent=Os12t0165900-01
Chr12	irgsp1_rep	mRNA	3346937	3352763	.	+	.	ID=Os12t0166000-00;Name=Os12t0166000-00;Locus_id=Os12g0166000;Oryzabase Gene Symbol Synonym(s)=OsNucAP3%2C NUCAP3;Oryzabase Gene Name Synonym(s)=Nucleoporin Autopeptidase 3%2C NUCLEOPORIN AUTOPEPTIDASE 3;Note=Conserved hypothetical protein.;Transcript_evidence=AK363275 (DDBJ);ORF_evidence=B8BNC7 (UniProt);Oryzabase=20076;TENOR=Os12t0166000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	3346937	3346986	.	+	.	Parent=Os12t0166000-00
Chr12	irgsp1_rep	CDS	3346987	3347005	.	+	0	Parent=Os12t0166000-00
Chr12	irgsp1_rep	CDS	3347384	3347791	.	+	2	Parent=Os12t0166000-00
Chr12	irgsp1_rep	CDS	3348788	3349234	.	+	2	Parent=Os12t0166000-00
Chr12	irgsp1_rep	CDS	3349494	3349726	.	+	2	Parent=Os12t0166000-00
Chr12	irgsp1_rep	CDS	3350062	3350538	.	+	0	Parent=Os12t0166000-00
Chr12	irgsp1_rep	CDS	3350702	3350765	.	+	0	Parent=Os12t0166000-00
Chr12	irgsp1_rep	CDS	3350865	3350925	.	+	2	Parent=Os12t0166000-00
Chr12	irgsp1_rep	CDS	3351221	3351359	.	+	1	Parent=Os12t0166000-00
Chr12	irgsp1_rep	CDS	3351511	3351627	.	+	0	Parent=Os12t0166000-00
Chr12	irgsp1_rep	CDS	3351744	3351921	.	+	0	Parent=Os12t0166000-00
Chr12	irgsp1_rep	CDS	3352143	3352225	.	+	2	Parent=Os12t0166000-00
Chr12	irgsp1_rep	three_prime_UTR	3352226	3352763	.	+	.	Parent=Os12t0166000-00
Chr12	irgsp1_rep	mRNA	3328239	3329113	.	+	.	ID=Os12t0166100-01;Name=Os12t0166100-01;Locus_id=Os12g0166100;Note=Conserved hypothetical protein.;Transcript_evidence=AK243427 (DDBJ%2C Best hit);ORF_evidence=NP_001176806.1 (RefSeq);NIAS_FLcDNA=J100067J23;TENOR=Os12t0166100-01;KEGG=Os12t0166100-01
Chr12	irgsp1_rep	five_prime_UTR	3328239	3328441	.	+	.	Parent=Os12t0166100-01
Chr12	irgsp1_rep	CDS	3328442	3328852	.	+	0	Parent=Os12t0166100-01
Chr12	irgsp1_rep	three_prime_UTR	3328853	3329113	.	+	.	Parent=Os12t0166100-01
Chr12	irgsp1_rep	mRNA	3357300	3358871	.	-	.	ID=Os12t0166300-00;Name=Os12t0166300-00;Locus_id=Os12g0166300;Note=Similar to 21 kDa extracellular calmodulin-binding protein.;Transcript_evidence=AK374974 (DDBJ);ORF_evidence=Q94CJ4 (UniProt);InterPro=Concanavalin A-like lectin/glucanase (IPR008985),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Alginate lyase 2 (IPR014895);TENOR=Os12t0166300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	3358554	3358871	.	-	0	Parent=Os12t0166300-00
Chr12	irgsp1_rep	CDS	3357300	3357695	.	-	0	Parent=Os12t0166300-00
Chr12	irgsp1_rep	mRNA	3360632	3369211	.	+	.	ID=Os12t0166500-01;Name=Os12t0166500-01;Locus_id=Os12g0166500;Note=Similar to Nrap protein%2C expressed.;Transcript_evidence=AK068475 (DDBJ%2C Best hit);ORF_evidence=Q2QX78 (UniProt);InterPro=Nrap protein (IPR005554);NIAS_FLcDNA=J013152H07;TENOR=Os12t0166500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	3360632	3360715	.	+	.	Parent=Os12t0166500-01
Chr12	irgsp1_rep	CDS	3360716	3361042	.	+	0	Parent=Os12t0166500-01
Chr12	irgsp1_rep	CDS	3361688	3361853	.	+	0	Parent=Os12t0166500-01
Chr12	irgsp1_rep	CDS	3361975	3362094	.	+	2	Parent=Os12t0166500-01
Chr12	irgsp1_rep	CDS	3362253	3362386	.	+	2	Parent=Os12t0166500-01
Chr12	irgsp1_rep	CDS	3362629	3362788	.	+	0	Parent=Os12t0166500-01
Chr12	irgsp1_rep	CDS	3362870	3362937	.	+	2	Parent=Os12t0166500-01
Chr12	irgsp1_rep	CDS	3363446	3363544	.	+	0	Parent=Os12t0166500-01
Chr12	irgsp1_rep	CDS	3363767	3363882	.	+	0	Parent=Os12t0166500-01
Chr12	irgsp1_rep	CDS	3364308	3364482	.	+	1	Parent=Os12t0166500-01
Chr12	irgsp1_rep	CDS	3364562	3364594	.	+	0	Parent=Os12t0166500-01
Chr12	irgsp1_rep	three_prime_UTR	3364595	3364662	.	+	.	Parent=Os12t0166500-01
Chr12	irgsp1_rep	three_prime_UTR	3364757	3364835	.	+	.	Parent=Os12t0166500-01
Chr12	irgsp1_rep	three_prime_UTR	3365022	3365082	.	+	.	Parent=Os12t0166500-01
Chr12	irgsp1_rep	three_prime_UTR	3365156	3365961	.	+	.	Parent=Os12t0166500-01
Chr12	irgsp1_rep	three_prime_UTR	3366041	3366159	.	+	.	Parent=Os12t0166500-01
Chr12	irgsp1_rep	three_prime_UTR	3366250	3366606	.	+	.	Parent=Os12t0166500-01
Chr12	irgsp1_rep	three_prime_UTR	3367187	3367485	.	+	.	Parent=Os12t0166500-01
Chr12	irgsp1_rep	three_prime_UTR	3367732	3367824	.	+	.	Parent=Os12t0166500-01
Chr12	irgsp1_rep	three_prime_UTR	3367898	3368003	.	+	.	Parent=Os12t0166500-01
Chr12	irgsp1_rep	three_prime_UTR	3368345	3368490	.	+	.	Parent=Os12t0166500-01
Chr12	irgsp1_rep	three_prime_UTR	3368567	3368647	.	+	.	Parent=Os12t0166500-01
Chr12	irgsp1_rep	three_prime_UTR	3368788	3369211	.	+	.	Parent=Os12t0166500-01
Chr12	irgsp1_rep	mRNA	3375453	3381285	.	+	.	ID=Os12t0166600-00;Name=Os12t0166600-00;Locus_id=Os12g0166600;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=tplb0042l08 (Wheat FLcDNA);ORF_evidence=Q2QX77 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);TENOR=Os12t0166600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	3375453	3375468	.	+	.	Parent=Os12t0166600-00
Chr12	irgsp1_rep	CDS	3375469	3376377	.	+	0	Parent=Os12t0166600-00
Chr12	irgsp1_rep	CDS	3379254	3379274	.	+	0	Parent=Os12t0166600-00
Chr12	irgsp1_rep	three_prime_UTR	3379275	3381285	.	+	.	Parent=Os12t0166600-00
Chr12	irgsp1_rep	mRNA	3383995	3385735	.	-	.	ID=Os12t0166700-01;Name=Os12t0166700-01;Locus_id=Os12g0166700;Note=Conserved hypothetical protein.;Transcript_evidence=AK071570 (DDBJ%2C Best hit);ORF_evidence=B8ATT0 (UniProt);NIAS_FLcDNA=J023107F12;TENOR=Os12t0166700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	3384443	3385735	.	-	.	Parent=Os12t0166700-01
Chr12	irgsp1_rep	CDS	3384044	3384442	.	-	0	Parent=Os12t0166700-01
Chr12	irgsp1_rep	three_prime_UTR	3383995	3384043	.	-	.	Parent=Os12t0166700-01
Chr12	irgsp1_rep	mRNA	3402727	3404860	.	-	.	ID=Os12t0167700-01;Name=Os12t0167700-01;Locus_id=Os12g0167700;Note=Similar to SAP domain containing protein%2C expressed.;Transcript_evidence=AK059066 (DDBJ%2C Best hit);ORF_evidence=Q2QX71 (UniProt);NIAS_FLcDNA=001-021-G10;TENOR=Os12t0167700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	3404473	3404860	.	-	0	Parent=Os12t0167700-01
Chr12	irgsp1_rep	CDS	3403594	3403980	.	-	2	Parent=Os12t0167700-01
Chr12	irgsp1_rep	CDS	3403200	3403486	.	-	2	Parent=Os12t0167700-01
Chr12	irgsp1_rep	three_prime_UTR	3402727	3403199	.	-	.	Parent=Os12t0167700-01
Chr12	irgsp1_rep	mRNA	3429223	3431766	.	+	.	ID=Os12t0167900-01;Name=Os12t0167900-01;Locus_id=Os12g0167900;RAP-DB Gene Symbol Synonym(s)=RPL3A%2C OsRPL3A%2C ARP1%2C ARP3;RAP-DB Gene Name Synonym(s)=RIBOSOMAL PROTEIN L3A%2C ribosomal protein L3A%2C r-protein L3%2C ribosomal protein L3;CGSNL Gene Symbol=RPL3A;CGSNL Gene Name=RIBOSOMAL PROTEIN L3A;Oryzabase Gene Symbol Synonym(s)=OsRPL3A%2C ARP1%2C ARP3;Oryzabase Gene Name Synonym(s)=ribosomal protein L3A%2C r-protein L3%2C ribosomal protein L3;Note=Ribosomal protein L3A;Transcript_evidence=D12630 (Yamahousi),AK060925,BK001243;ORF_evidence=P35684,Q0IPU6;GO=Biological Process: translation (GO:0006412),Molecular Function: structural constituent of ribosome (GO:0003735),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840);InterPro=Ribosomal protein L3 (IPR000597),Translation protein%2C beta-barrel domain (IPR009000),Ribosomal protein L3%2C conserved site (IPR019926);NIAS_FLcDNA=001-035-H11;Manual Curation=June 1%2C 2016;Literature_PMID=27241493,17216491,8218398;Oryzabase=14678;Expression=AK060925;TENOR=Os12t0167900-01;KEGG=Os12t0167900-01
Chr12	irgsp1_rep	five_prime_UTR	3429223	3429270	.	+	.	Parent=Os12t0167900-01
Chr12	irgsp1_rep	five_prime_UTR	3429487	3429501	.	+	.	Parent=Os12t0167900-01
Chr12	irgsp1_rep	CDS	3429502	3429586	.	+	0	Parent=Os12t0167900-01
Chr12	irgsp1_rep	CDS	3430192	3430302	.	+	2	Parent=Os12t0167900-01
Chr12	irgsp1_rep	CDS	3430384	3430688	.	+	2	Parent=Os12t0167900-01
Chr12	irgsp1_rep	CDS	3430771	3431180	.	+	0	Parent=Os12t0167900-01
Chr12	irgsp1_rep	CDS	3431273	3431531	.	+	1	Parent=Os12t0167900-01
Chr12	irgsp1_rep	three_prime_UTR	3431532	3431766	.	+	.	Parent=Os12t0167900-01
Chr12	irgsp1_rep	mRNA	3431109	3431530	.	-	.	ID=Os12t0167950-00;Name=Os12t0167950-00;Locus_id=Os12g0167950;Note=Non-protein coding transcript.;Transcript_evidence=BT016883 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0167950-00
Chr12	irgsp1_rep	exon	3431258	3431530	.	-	.	Parent=Os12t0167950-00
Chr12	irgsp1_rep	exon	3431109	3431162	.	-	.	Parent=Os12t0167950-00
Chr12	irgsp1_rep	mRNA	3431937	3437222	.	+	.	ID=Os12t0168000-01;Name=Os12t0168000-01;Locus_id=Os12g0168000;Note=5-formyltetrahydrofolate cyclo-ligase family protein.;Transcript_evidence=AK065623 (DDBJ%2C Best hit);ORF_evidence=B6U451 (UniProt);GO=Biological Process: folic acid-containing compound biosynthetic process (GO:0009396),Molecular Function: ATP binding (GO:0005524),Molecular Function: 5-formyltetrahydrofolate cyclo-ligase activity (GO:0030272);InterPro=5-formyltetrahydrofolate cyclo-ligase (IPR002698),5-formyltetrahydrofolate cyclo-ligase-like domain (IPR024185);NIAS_FLcDNA=J013031H02;Expression=AK065623;TENOR=Os12t0168000-01;KEGG=Os12t0168000-01
Chr12	irgsp1_rep	five_prime_UTR	3431937	3431959	.	+	.	Parent=Os12t0168000-01
Chr12	irgsp1_rep	CDS	3431960	3432328	.	+	0	Parent=Os12t0168000-01
Chr12	irgsp1_rep	CDS	3433250	3433340	.	+	0	Parent=Os12t0168000-01
Chr12	irgsp1_rep	CDS	3434242	3434468	.	+	2	Parent=Os12t0168000-01
Chr12	irgsp1_rep	CDS	3434736	3434811	.	+	0	Parent=Os12t0168000-01
Chr12	irgsp1_rep	CDS	3434959	3435084	.	+	2	Parent=Os12t0168000-01
Chr12	irgsp1_rep	CDS	3435171	3435334	.	+	2	Parent=Os12t0168000-01
Chr12	irgsp1_rep	three_prime_UTR	3435335	3435341	.	+	.	Parent=Os12t0168000-01
Chr12	irgsp1_rep	three_prime_UTR	3436773	3437222	.	+	.	Parent=Os12t0168000-01
Chr12	irgsp1_rep	mRNA	3432106	3437195	.	+	.	ID=Os12t0168000-02;Name=Os12t0168000-02;Locus_id=Os12g0168000;Note=Similar to 5-formyltetrahydrofolate cyclo-ligase.;Transcript_evidence=AK072953 (DDBJ%2C Best hit);ORF_evidence=B6U451 (UniProt);GO=Biological Process: folic acid-containing compound biosynthetic process (GO:0009396),Molecular Function: ATP binding (GO:0005524),Molecular Function: 5-formyltetrahydrofolate cyclo-ligase activity (GO:0030272);InterPro=5-formyltetrahydrofolate cyclo-ligase (IPR002698),5-formyltetrahydrofolate cyclo-ligase-like domain (IPR024185);NIAS_FLcDNA=J023146M12;TENOR=Os12t0168000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	3432106	3432154	.	+	.	Parent=Os12t0168000-02
Chr12	irgsp1_rep	CDS	3432155	3432328	.	+	0	Parent=Os12t0168000-02
Chr12	irgsp1_rep	CDS	3433250	3433340	.	+	0	Parent=Os12t0168000-02
Chr12	irgsp1_rep	CDS	3434242	3434468	.	+	2	Parent=Os12t0168000-02
Chr12	irgsp1_rep	CDS	3434736	3434811	.	+	0	Parent=Os12t0168000-02
Chr12	irgsp1_rep	CDS	3434959	3435084	.	+	2	Parent=Os12t0168000-02
Chr12	irgsp1_rep	CDS	3435171	3435334	.	+	2	Parent=Os12t0168000-02
Chr12	irgsp1_rep	three_prime_UTR	3435335	3435341	.	+	.	Parent=Os12t0168000-02
Chr12	irgsp1_rep	three_prime_UTR	3436773	3437195	.	+	.	Parent=Os12t0168000-02
Chr12	irgsp1_rep	mRNA	3437394	3440088	.	-	.	ID=Os12t0168100-01;Name=Os12t0168100-01;Locus_id=Os12g0168100;CGSNL Gene Symbol=ERF124;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 124;Oryzabase Gene Symbol Synonym(s)=DERF8%2C OsDERF8%2C OsERF#124%2C OsERF124%2C AP2/EREBP#158%2C AP2/EREBP158;Oryzabase Gene Name Synonym(s)=drought-responsive ethylene response factor 8%2C drought-responsive ERF 8%2C ethylene response factor 124%2C APETALA2/ethylene-responsive element binding protein 158;Note=Similar to AP2 domain containing protein RAP2.6 (Fragment).;Transcript_evidence=AK107125 (DDBJ%2C Best hit);ORF_evidence=B8BND0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=002-124-B10;Oryzabase=9694;Expression=AK107125;TENOR=Os12t0168100-01;KEGG=Os12t0168100-01
Chr12	irgsp1_rep	five_prime_UTR	3440040	3440088	.	-	.	Parent=Os12t0168100-01
Chr12	irgsp1_rep	CDS	3439688	3440039	.	-	0	Parent=Os12t0168100-01
Chr12	irgsp1_rep	CDS	3437840	3438513	.	-	2	Parent=Os12t0168100-01
Chr12	irgsp1_rep	three_prime_UTR	3437394	3437839	.	-	.	Parent=Os12t0168100-01
Chr12	irgsp1_rep	mRNA	3437905	3438723	.	+	.	ID=Os12t0168150-00;Name=Os12t0168150-00;Locus_id=Os12g0168150;Note=Hypothetical gene.;Transcript_evidence=CU406355 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os12t0168150-00;KEGG=Os12t0168150-00
Chr12	irgsp1_rep	five_prime_UTR	3437905	3437905	.	+	.	Parent=Os12t0168150-00
Chr12	irgsp1_rep	CDS	3437906	3438586	.	+	0	Parent=Os12t0168150-00
Chr12	irgsp1_rep	three_prime_UTR	3438587	3438723	.	+	.	Parent=Os12t0168150-00
Chr12	irgsp1_rep	mRNA	3450080	3454055	.	-	.	ID=Os12t0168200-01;Name=Os12t0168200-01;Locus_id=Os12g0168200;Note=RNA polymerase II subunit A%2C C-terminal domain phosphatase domain containing protein.;Transcript_evidence=AK069543 (DDBJ%2C Best hit);ORF_evidence=B4FVM8 (UniProt);GO=Biological Process: mRNA processing (GO:0006397),Cellular Component: nucleus (GO:0005634),Molecular Function: phosphoprotein phosphatase activity (GO:0004721);InterPro=RNA polymerase II subunit A (IPR006811);NIAS_FLcDNA=J023025N02;Expression=AK069543;TENOR=Os12t0168200-01;KEGG=Os12t0168200-01
Chr12	irgsp1_rep	five_prime_UTR	3453946	3454055	.	-	.	Parent=Os12t0168200-01
Chr12	irgsp1_rep	CDS	3453713	3453945	.	-	0	Parent=Os12t0168200-01
Chr12	irgsp1_rep	CDS	3453230	3453375	.	-	1	Parent=Os12t0168200-01
Chr12	irgsp1_rep	CDS	3452955	3453073	.	-	2	Parent=Os12t0168200-01
Chr12	irgsp1_rep	CDS	3450564	3450668	.	-	0	Parent=Os12t0168200-01
Chr12	irgsp1_rep	three_prime_UTR	3450080	3450563	.	-	.	Parent=Os12t0168200-01
Chr12	irgsp1_rep	mRNA	3455590	3463006	.	+	.	ID=Os12t0168400-01;Name=Os12t0168400-01;Locus_id=Os12g0168400;Oryzabase Gene Symbol Synonym(s)=OsDjA11;Oryzabase Gene Name Synonym(s)=DnaJ domain protein A11;Note=Similar to GFA2.;Transcript_evidence=AK065706 (DDBJ%2C Best hit);ORF_evidence=B6TA99 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: response to heat (GO:0009408),Molecular Function: ATP binding (GO:0005524),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C cysteine-rich domain (IPR001305),Heat shock protein DnaJ%2C N-terminal (IPR001623),Chaperone DnaJ%2C C-terminal (IPR002939),Heat shock protein DnaJ (IPR003095),HSP40/DnaJ peptide-binding (IPR008971),Chaperone DnaJ (IPR012724),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=J013038P03;Oryzabase=12148;Expression=AK065706;TENOR=Os12t0168400-01;KEGG=Os12t0168400-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	3455590	3455662	.	+	.	Parent=Os12t0168400-01
Chr12	irgsp1_rep	CDS	3455663	3455716	.	+	0	Parent=Os12t0168400-01
Chr12	irgsp1_rep	CDS	3455812	3455887	.	+	0	Parent=Os12t0168400-01
Chr12	irgsp1_rep	CDS	3455999	3456049	.	+	2	Parent=Os12t0168400-01
Chr12	irgsp1_rep	CDS	3457102	3457193	.	+	2	Parent=Os12t0168400-01
Chr12	irgsp1_rep	CDS	3458375	3458458	.	+	0	Parent=Os12t0168400-01
Chr12	irgsp1_rep	CDS	3458551	3458589	.	+	0	Parent=Os12t0168400-01
Chr12	irgsp1_rep	CDS	3458905	3458994	.	+	0	Parent=Os12t0168400-01
Chr12	irgsp1_rep	CDS	3459520	3459564	.	+	0	Parent=Os12t0168400-01
Chr12	irgsp1_rep	CDS	3459655	3459742	.	+	0	Parent=Os12t0168400-01
Chr12	irgsp1_rep	CDS	3459855	3459919	.	+	2	Parent=Os12t0168400-01
Chr12	irgsp1_rep	CDS	3460016	3460090	.	+	0	Parent=Os12t0168400-01
Chr12	irgsp1_rep	CDS	3461184	3461256	.	+	0	Parent=Os12t0168400-01
Chr12	irgsp1_rep	CDS	3461661	3461752	.	+	2	Parent=Os12t0168400-01
Chr12	irgsp1_rep	CDS	3461849	3461920	.	+	0	Parent=Os12t0168400-01
Chr12	irgsp1_rep	CDS	3462118	3462174	.	+	0	Parent=Os12t0168400-01
Chr12	irgsp1_rep	CDS	3462269	3462317	.	+	0	Parent=Os12t0168400-01
Chr12	irgsp1_rep	CDS	3462475	3462541	.	+	2	Parent=Os12t0168400-01
Chr12	irgsp1_rep	CDS	3462649	3462739	.	+	1	Parent=Os12t0168400-01
Chr12	irgsp1_rep	three_prime_UTR	3462740	3463006	.	+	.	Parent=Os12t0168400-01
Chr12	irgsp1_rep	mRNA	3483918	3489140	.	+	.	ID=Os12t0168700-01;Name=Os12t0168700-01;Locus_id=Os12g0168700;RAP-DB Gene Symbol Synonym(s)=OsLACS9;RAP-DB Gene Name Synonym(s)=Long-chain acyl-CoA synthetase 9;Oryzabase Gene Symbol Synonym(s)=LACS1%2C OsLACS1;Oryzabase Gene Name Synonym(s)=Long-chain acyl-CoA synthetase 1;Note=Long-chain acyl-CoA synthetase%2C Starch degradation%2C Plant growth;Transcript_evidence=AK065718;ORF_evidence=Q2QX58;GO=Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase-like superfamily (IPR042099),AMP-dependent synthetase/ligase (IPR000873),AMP-binding%2C conserved site (IPR020845);NIAS_FLcDNA=J013042P14;Manual Curation=March 30%2C 2020;Literature_PMID=32210132;Oryzabase=18130;Expression=AK065718;TENOR=Os12t0168700-01;KEGG=Os12t0168700-01 (EC:6.2.1.3);Subcellular location=chloroplast envelope (GO:0009941)
Chr12	irgsp1_rep	five_prime_UTR	3483918	3484877	.	+	.	Parent=Os12t0168700-01
Chr12	irgsp1_rep	CDS	3484878	3485327	.	+	0	Parent=Os12t0168700-01
Chr12	irgsp1_rep	CDS	3486024	3486104	.	+	0	Parent=Os12t0168700-01
Chr12	irgsp1_rep	CDS	3486195	3486467	.	+	0	Parent=Os12t0168700-01
Chr12	irgsp1_rep	CDS	3486648	3486779	.	+	0	Parent=Os12t0168700-01
Chr12	irgsp1_rep	CDS	3486856	3487029	.	+	0	Parent=Os12t0168700-01
Chr12	irgsp1_rep	CDS	3487117	3487346	.	+	0	Parent=Os12t0168700-01
Chr12	irgsp1_rep	CDS	3487515	3487632	.	+	1	Parent=Os12t0168700-01
Chr12	irgsp1_rep	CDS	3487901	3488032	.	+	0	Parent=Os12t0168700-01
Chr12	irgsp1_rep	CDS	3488142	3488276	.	+	0	Parent=Os12t0168700-01
Chr12	irgsp1_rep	CDS	3488346	3488552	.	+	0	Parent=Os12t0168700-01
Chr12	irgsp1_rep	CDS	3488725	3488889	.	+	0	Parent=Os12t0168700-01
Chr12	irgsp1_rep	three_prime_UTR	3488890	3489140	.	+	.	Parent=Os12t0168700-01
Chr12	irgsp1_rep	mRNA	3483922	3489140	.	+	.	ID=Os12t0168700-02;Name=Os12t0168700-02;Locus_id=Os12g0168700;CGSNL Gene Symbol=LACS9;CGSNL Gene Name=LONG-CHAIN ACYL-COA SYNTHETASE 9;Oryzabase Gene Symbol Synonym(s)=OsLACS1%2C LACS1%2C OsLACS9;Oryzabase Gene Name Synonym(s)=Long-chain acyl-CoA synthetase 1;Note=AMP-dependent synthetase and ligase domain containing protein.;Transcript_evidence=AK065708 (DDBJ%2C Best hit);ORF_evidence=NP_177882.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873),AMP-binding%2C conserved site (IPR020845);NIAS_FLcDNA=J013041H23;Oryzabase=18130;Expression=AK065708;TENOR=Os12t0168700-02;KEGG=Os12t0168700-02 (EC:6.2.1.3)
Chr12	irgsp1_rep	five_prime_UTR	3483922	3483990	.	+	.	Parent=Os12t0168700-02
Chr12	irgsp1_rep	five_prime_UTR	3484799	3484877	.	+	.	Parent=Os12t0168700-02
Chr12	irgsp1_rep	CDS	3484878	3485327	.	+	0	Parent=Os12t0168700-02
Chr12	irgsp1_rep	CDS	3486024	3486104	.	+	0	Parent=Os12t0168700-02
Chr12	irgsp1_rep	CDS	3486195	3486467	.	+	0	Parent=Os12t0168700-02
Chr12	irgsp1_rep	CDS	3486648	3486779	.	+	0	Parent=Os12t0168700-02
Chr12	irgsp1_rep	CDS	3486856	3487029	.	+	0	Parent=Os12t0168700-02
Chr12	irgsp1_rep	CDS	3487117	3487346	.	+	0	Parent=Os12t0168700-02
Chr12	irgsp1_rep	CDS	3487515	3487632	.	+	1	Parent=Os12t0168700-02
Chr12	irgsp1_rep	CDS	3487901	3488032	.	+	0	Parent=Os12t0168700-02
Chr12	irgsp1_rep	CDS	3488142	3488276	.	+	0	Parent=Os12t0168700-02
Chr12	irgsp1_rep	CDS	3488346	3488552	.	+	0	Parent=Os12t0168700-02
Chr12	irgsp1_rep	CDS	3488725	3488889	.	+	0	Parent=Os12t0168700-02
Chr12	irgsp1_rep	three_prime_UTR	3488890	3489140	.	+	.	Parent=Os12t0168700-02
Chr12	irgsp1_rep	mRNA	3486437	3489117	.	+	.	ID=Os12t0168700-03;Name=Os12t0168700-03;Locus_id=Os12g0168700;CGSNL Gene Symbol=LACS9;CGSNL Gene Name=LONG-CHAIN ACYL-COA SYNTHETASE 9;Oryzabase Gene Symbol Synonym(s)=OsLACS1%2C LACS1%2C OsLACS9;Oryzabase Gene Name Synonym(s)=Long-chain acyl-CoA synthetase 1;Note=Similar to LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9)%3B long-chain-fatty-acid-CoA ligase.;Transcript_evidence=AK061697 (DDBJ%2C Best hit);ORF_evidence=NP_177882.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=AMP-dependent synthetase/ligase (IPR000873);NIAS_FLcDNA=001-037-D01;Oryzabase=18130;Expression=AK061697;TENOR=Os12t0168700-03;KEGG=Os12t0168700-03 (EC:6.2.1.3)
Chr12	irgsp1_rep	five_prime_UTR	3486437	3486437	.	+	.	Parent=Os12t0168700-03
Chr12	irgsp1_rep	CDS	3486438	3486467	.	+	0	Parent=Os12t0168700-03
Chr12	irgsp1_rep	CDS	3486648	3486779	.	+	0	Parent=Os12t0168700-03
Chr12	irgsp1_rep	CDS	3486856	3487029	.	+	0	Parent=Os12t0168700-03
Chr12	irgsp1_rep	CDS	3487117	3487346	.	+	0	Parent=Os12t0168700-03
Chr12	irgsp1_rep	CDS	3487515	3487632	.	+	1	Parent=Os12t0168700-03
Chr12	irgsp1_rep	CDS	3487901	3488032	.	+	0	Parent=Os12t0168700-03
Chr12	irgsp1_rep	CDS	3488142	3488276	.	+	0	Parent=Os12t0168700-03
Chr12	irgsp1_rep	CDS	3488346	3488552	.	+	0	Parent=Os12t0168700-03
Chr12	irgsp1_rep	CDS	3488725	3488889	.	+	0	Parent=Os12t0168700-03
Chr12	irgsp1_rep	three_prime_UTR	3488890	3489117	.	+	.	Parent=Os12t0168700-03
Chr12	irgsp1_rep	mRNA	3495956	3497682	.	+	.	ID=Os12t0168800-01;Name=Os12t0168800-01;Locus_id=Os12g0168800;CGSNL Gene Symbol=GATA26;CGSNL Gene Name=GATA TRANSCRIPTION FACTOR 26;Oryzabase Gene Symbol Synonym(s)=OsGATA26;Oryzabase Gene Name Synonym(s)=GATA transcription factor 26%2C GATA factor 26;Note=Similar to AG-motif binding protein-2.;Transcript_evidence=AK068306 (DDBJ%2C Best hit);ORF_evidence=Q2QX57 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Zinc finger%2C GATA-type (IPR000679),Zinc finger%2C NHR/GATA-type (IPR013088);NIAS_FLcDNA=J013136H07;Oryzabase=20505;Expression=AK068306;TENOR=Os12t0168800-01;KEGG=Os12t0168800-01
Chr12	irgsp1_rep	five_prime_UTR	3495956	3496073	.	+	.	Parent=Os12t0168800-01
Chr12	irgsp1_rep	CDS	3496074	3496103	.	+	0	Parent=Os12t0168800-01
Chr12	irgsp1_rep	CDS	3496223	3497437	.	+	0	Parent=Os12t0168800-01
Chr12	irgsp1_rep	three_prime_UTR	3497438	3497682	.	+	.	Parent=Os12t0168800-01
Chr12	irgsp1_rep	mRNA	3499498	3502235	.	-	.	ID=Os12t0168900-01;Name=Os12t0168900-01;Locus_id=Os12g0168900;Note=Similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (EC 3.6.3.14) (V- ATPase 16 kDa proteolipid subunit) (Fragment).;Transcript_evidence=AK071641 (DDBJ%2C Best hit);ORF_evidence=Q94G11 (UniProt);GO=Biological Process: ATP hydrolysis coupled proton transport (GO:0015991),Cellular Component: proton-transporting two-sector ATPase complex%2C proton-transporting domain (GO:0033177),Cellular Component: proton-transporting V-type ATPase%2C V0 domain (GO:0033179),Molecular Function: hydrogen ion transmembrane transporter activity (GO:0015078);InterPro=ATPase%2C V0 complex%2C proteolipid subunit C (IPR000245),ATPase%2C F0/V0 complex%2C subunit C (IPR002379),ATPase%2C V0 complex%2C proteolipid subunit C%2C eukaryotic (IPR011555);NIAS_FLcDNA=J023106A11;TENOR=Os12t0168900-01
Chr12	irgsp1_rep	five_prime_UTR	3501960	3502235	.	-	.	Parent=Os12t0168900-01
Chr12	irgsp1_rep	CDS	3501881	3501959	.	-	0	Parent=Os12t0168900-01
Chr12	irgsp1_rep	CDS	3501457	3501742	.	-	2	Parent=Os12t0168900-01
Chr12	irgsp1_rep	CDS	3499801	3499933	.	-	1	Parent=Os12t0168900-01
Chr12	irgsp1_rep	three_prime_UTR	3499498	3499800	.	-	.	Parent=Os12t0168900-01
Chr12	irgsp1_rep	mRNA	3499502	3502201	.	-	.	ID=Os12t0168900-02;Name=Os12t0168900-02;Locus_id=Os12g0168900;Note=Similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (EC 3.6.3.14) (V- ATPase 16 kDa proteolipid subunit) (Fragment).;Transcript_evidence=AK104011 (DDBJ%2C Best hit);ORF_evidence=Q94G11 (UniProt);GO=Biological Process: ATP hydrolysis coupled proton transport (GO:0015991),Cellular Component: proton-transporting two-sector ATPase complex%2C proton-transporting domain (GO:0033177),Cellular Component: proton-transporting V-type ATPase%2C V0 domain (GO:0033179),Molecular Function: hydrogen ion transmembrane transporter activity (GO:0015078);InterPro=ATPase%2C V0 complex%2C proteolipid subunit C (IPR000245),ATPase%2C F0/V0 complex%2C subunit C (IPR002379),ATPase%2C V0 complex%2C proteolipid subunit C%2C eukaryotic (IPR011555);NIAS_FLcDNA=001-007-B07;TENOR=Os12t0168900-02
Chr12	irgsp1_rep	five_prime_UTR	3501960	3502201	.	-	.	Parent=Os12t0168900-02
Chr12	irgsp1_rep	CDS	3501881	3501959	.	-	0	Parent=Os12t0168900-02
Chr12	irgsp1_rep	CDS	3501457	3501742	.	-	2	Parent=Os12t0168900-02
Chr12	irgsp1_rep	CDS	3499801	3499933	.	-	1	Parent=Os12t0168900-02
Chr12	irgsp1_rep	three_prime_UTR	3499502	3499800	.	-	.	Parent=Os12t0168900-02
Chr12	irgsp1_rep	mRNA	3499498	3502158	.	-	.	ID=Os12t0168900-03;Name=Os12t0168900-03;Locus_id=Os12g0168900;Note=Similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (EC 3.6.3.14) (V- ATPase 16 kDa proteolipid subunit) (Fragment).;Transcript_evidence=AK119725 (DDBJ%2C Best hit);ORF_evidence=Q94G11 (UniProt);GO=Biological Process: ATP hydrolysis coupled proton transport (GO:0015991),Cellular Component: proton-transporting two-sector ATPase complex%2C proton-transporting domain (GO:0033177),Cellular Component: proton-transporting V-type ATPase%2C V0 domain (GO:0033179),Molecular Function: hydrogen ion transmembrane transporter activity (GO:0015078);InterPro=ATPase%2C V0 complex%2C proteolipid subunit C (IPR000245),ATPase%2C F0/V0 complex%2C subunit C (IPR002379),ATPase%2C V0 complex%2C proteolipid subunit C%2C eukaryotic (IPR011555);NIAS_FLcDNA=002-157-H04;TENOR=Os12t0168900-03
Chr12	irgsp1_rep	five_prime_UTR	3501960	3502158	.	-	.	Parent=Os12t0168900-03
Chr12	irgsp1_rep	CDS	3501881	3501959	.	-	0	Parent=Os12t0168900-03
Chr12	irgsp1_rep	CDS	3501457	3501742	.	-	2	Parent=Os12t0168900-03
Chr12	irgsp1_rep	CDS	3499801	3499933	.	-	1	Parent=Os12t0168900-03
Chr12	irgsp1_rep	three_prime_UTR	3499498	3499800	.	-	.	Parent=Os12t0168900-03
Chr12	irgsp1_rep	mRNA	3503313	3509337	.	-	.	ID=Os12t0169000-00;Name=Os12t0169000-00;Locus_id=Os12g0169000;Note=Similar to Amidase family protein%2C expressed.;Transcript_evidence=FP093710 (DDBJ);ORF_evidence=Q2QX53 (UniProt);GO=Molecular Function: carbon-nitrogen ligase activity%2C with glutamine as amido-N-donor (GO:0016884);InterPro=Amidase (IPR000120),Amidase signature domain (IPR023631);TENOR=Os12t0169000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	3509193	3509337	.	-	.	Parent=Os12t0169000-00
Chr12	irgsp1_rep	CDS	3509108	3509192	.	-	0	Parent=Os12t0169000-00
Chr12	irgsp1_rep	CDS	3508869	3508978	.	-	2	Parent=Os12t0169000-00
Chr12	irgsp1_rep	CDS	3508481	3508541	.	-	0	Parent=Os12t0169000-00
Chr12	irgsp1_rep	CDS	3508169	3508359	.	-	2	Parent=Os12t0169000-00
Chr12	irgsp1_rep	CDS	3507802	3507931	.	-	0	Parent=Os12t0169000-00
Chr12	irgsp1_rep	CDS	3506741	3506818	.	-	2	Parent=Os12t0169000-00
Chr12	irgsp1_rep	CDS	3505903	3506163	.	-	2	Parent=Os12t0169000-00
Chr12	irgsp1_rep	CDS	3505659	3505806	.	-	2	Parent=Os12t0169000-00
Chr12	irgsp1_rep	CDS	3505208	3505250	.	-	1	Parent=Os12t0169000-00
Chr12	irgsp1_rep	CDS	3505049	3505120	.	-	0	Parent=Os12t0169000-00
Chr12	irgsp1_rep	CDS	3504879	3504959	.	-	0	Parent=Os12t0169000-00
Chr12	irgsp1_rep	CDS	3504620	3504723	.	-	0	Parent=Os12t0169000-00
Chr12	irgsp1_rep	CDS	3504440	3504532	.	-	1	Parent=Os12t0169000-00
Chr12	irgsp1_rep	CDS	3504254	3504322	.	-	1	Parent=Os12t0169000-00
Chr12	irgsp1_rep	CDS	3503940	3504004	.	-	1	Parent=Os12t0169000-00
Chr12	irgsp1_rep	CDS	3503784	3503845	.	-	2	Parent=Os12t0169000-00
Chr12	irgsp1_rep	CDS	3503595	3503694	.	-	0	Parent=Os12t0169000-00
Chr12	irgsp1_rep	CDS	3503444	3503472	.	-	2	Parent=Os12t0169000-00
Chr12	irgsp1_rep	three_prime_UTR	3503313	3503443	.	-	.	Parent=Os12t0169000-00
Chr12	irgsp1_rep	mRNA	3514879	3521716	.	-	.	ID=Os12t0169100-01;Name=Os12t0169100-01;Locus_id=Os12g0169100;Note=Protein of unknown function DUF869%2C plant family protein.;Transcript_evidence=AK067565 (DDBJ%2C Best hit);ORF_evidence=Q2QX52 (UniProt);InterPro=Protein of unknown function DUF869%2C plant (IPR008587);NIAS_FLcDNA=J013112J12;Expression=AK067565;TENOR=Os12t0169100-01;KEGG=Os12t0169100-01
Chr12	irgsp1_rep	five_prime_UTR	3521612	3521716	.	-	.	Parent=Os12t0169100-01
Chr12	irgsp1_rep	five_prime_UTR	3520206	3520305	.	-	.	Parent=Os12t0169100-01
Chr12	irgsp1_rep	CDS	3520089	3520205	.	-	0	Parent=Os12t0169100-01
Chr12	irgsp1_rep	CDS	3518602	3518929	.	-	0	Parent=Os12t0169100-01
Chr12	irgsp1_rep	CDS	3515683	3518063	.	-	2	Parent=Os12t0169100-01
Chr12	irgsp1_rep	CDS	3515222	3515566	.	-	0	Parent=Os12t0169100-01
Chr12	irgsp1_rep	three_prime_UTR	3514879	3515221	.	-	.	Parent=Os12t0169100-01
Chr12	irgsp1_rep	mRNA	3514879	3516711	.	-	.	ID=Os12t0169100-02;Name=Os12t0169100-02;Locus_id=Os12g0169100;Note=Hypothetical conserved gene.;Transcript_evidence=AK060289 (DDBJ%2C Best hit);ORF_evidence=B9GC27 (UniProt);InterPro=Protein of unknown function DUF869%2C plant (IPR008587);NIAS_FLcDNA=001-006-C12;Expression=AK060289;TENOR=Os12t0169100-02;KEGG=Os12t0169100-02
Chr12	irgsp1_rep	CDS	3515683	3516711	.	-	0	Parent=Os12t0169100-02
Chr12	irgsp1_rep	CDS	3515222	3515566	.	-	0	Parent=Os12t0169100-02
Chr12	irgsp1_rep	three_prime_UTR	3514879	3515221	.	-	.	Parent=Os12t0169100-02
Chr12	irgsp1_rep	mRNA	3523303	3523933	.	+	.	ID=Os12t0169200-00;Name=Os12t0169200-00;Locus_id=Os12g0169200;Note=Conserved hypothetical protein.;Transcript_evidence=EU947692 (DDBJ);ORF_evidence=Q2QX51 (UniProt);TENOR=Os12t0169200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	3523303	3523553	.	+	0	Parent=Os12t0169200-00
Chr12	irgsp1_rep	CDS	3523709	3523757	.	+	1	Parent=Os12t0169200-00
Chr12	irgsp1_rep	three_prime_UTR	3523758	3523933	.	+	.	Parent=Os12t0169200-00
Chr12	irgsp1_rep	mRNA	3525499	3526633	.	-	.	ID=Os12t0169300-00;Name=Os12t0169300-00;Locus_id=Os12g0169300;Oryzabase Gene Name Synonym(s)=Disheveled-associated activator of morphogenesis 1;Note=Conserved hypothetical protein.;Transcript_evidence=AK287997 (DDBJ%2C Secondary hit);ORF_evidence=NP_001176998.1 (RefSeq);Oryzabase=22567;TENOR=Os12t0169300-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	3526633	3526633	.	-	.	Parent=Os12t0169300-00
Chr12	irgsp1_rep	CDS	3526297	3526632	.	-	0	Parent=Os12t0169300-00
Chr12	irgsp1_rep	CDS	3525662	3526222	.	-	0	Parent=Os12t0169300-00
Chr12	irgsp1_rep	three_prime_UTR	3525499	3525661	.	-	.	Parent=Os12t0169300-00
Chr12	irgsp1_rep	mRNA	3531395	3536426	.	-	.	ID=Os12t0169400-01;Name=Os12t0169400-01;Locus_id=Os12g0169400;Oryzabase Gene Symbol Synonym(s)=OsCBSCBSPB4%2C CBSCBSPB4;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSCBSPB4%2C CBS domain containing protein OsCBSCBSPB4;Note=Cystathionine beta-synthase%2C core domain containing protein.;Transcript_evidence=AK069406 (DDBJ%2C Best hit);ORF_evidence=NP_001148069.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein binding (GO:0005515);InterPro=Phox/Bem1p (IPR000270),Cystathionine beta-synthase%2C core (IPR000644),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J023014B04;Oryzabase=10354;Expression=AK069406;TENOR=Os12t0169400-01;KEGG=Os12t0169400-01
Chr12	irgsp1_rep	five_prime_UTR	3536284	3536426	.	-	.	Parent=Os12t0169400-01
Chr12	irgsp1_rep	CDS	3536132	3536283	.	-	0	Parent=Os12t0169400-01
Chr12	irgsp1_rep	CDS	3535875	3536034	.	-	1	Parent=Os12t0169400-01
Chr12	irgsp1_rep	CDS	3535176	3535308	.	-	0	Parent=Os12t0169400-01
Chr12	irgsp1_rep	CDS	3533996	3534166	.	-	2	Parent=Os12t0169400-01
Chr12	irgsp1_rep	CDS	3533659	3533737	.	-	2	Parent=Os12t0169400-01
Chr12	irgsp1_rep	CDS	3533448	3533561	.	-	1	Parent=Os12t0169400-01
Chr12	irgsp1_rep	CDS	3533299	3533365	.	-	1	Parent=Os12t0169400-01
Chr12	irgsp1_rep	CDS	3533092	3533197	.	-	0	Parent=Os12t0169400-01
Chr12	irgsp1_rep	CDS	3532935	3532993	.	-	2	Parent=Os12t0169400-01
Chr12	irgsp1_rep	CDS	3532730	3532839	.	-	0	Parent=Os12t0169400-01
Chr12	irgsp1_rep	CDS	3532524	3532651	.	-	1	Parent=Os12t0169400-01
Chr12	irgsp1_rep	CDS	3532349	3532431	.	-	2	Parent=Os12t0169400-01
Chr12	irgsp1_rep	CDS	3532011	3532100	.	-	0	Parent=Os12t0169400-01
Chr12	irgsp1_rep	CDS	3531719	3531895	.	-	0	Parent=Os12t0169400-01
Chr12	irgsp1_rep	three_prime_UTR	3531395	3531718	.	-	.	Parent=Os12t0169400-01
Chr12	irgsp1_rep	mRNA	3542861	3544916	.	+	.	ID=Os12t0169600-01;Name=Os12t0169600-01;Locus_id=Os12g0169600;Note=Similar to Fructose-bisphosphate aldolase.;Transcript_evidence=AK242481 (DDBJ%2C Best hit);ORF_evidence=Q2RA00 (UniProt);GO=Biological Process: glycolysis (GO:0006096),Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: fructose-bisphosphate aldolase activity (GO:0004332);InterPro=Fructose-bisphosphate aldolase%2C class-I (IPR000741),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J080305A05;TENOR=Os12t0169600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	3542861	3542982	.	+	.	Parent=Os12t0169600-01
Chr12	irgsp1_rep	CDS	3542983	3543436	.	+	0	Parent=Os12t0169600-01
Chr12	irgsp1_rep	CDS	3543947	3544761	.	+	2	Parent=Os12t0169600-01
Chr12	irgsp1_rep	three_prime_UTR	3544762	3544916	.	+	.	Parent=Os12t0169600-01
Chr12	irgsp1_rep	mRNA	3549170	3552554	.	+	.	ID=Os12t0169700-01;Name=Os12t0169700-01;Locus_id=Os12g0169700;Note=Similar to Ferripyochelin-binding protein-like.;Transcript_evidence=AK058974 (DDBJ%2C Best hit),AK103904 (DDBJ%2C Best hit);ORF_evidence=NP_175159.1 (RefSeq);GO=Molecular Function: transferase activity (GO:0016740);InterPro=Bacterial transferase hexapeptide repeat (IPR001451),Trimeric LpxA-like (IPR011004);NIAS_FLcDNA=001-020-D04,J033150M03;Expression=AK058974;TENOR=Os12t0169700-01;KEGG=Os12t0169700-01
Chr12	irgsp1_rep	five_prime_UTR	3549170	3549341	.	+	.	Parent=Os12t0169700-01
Chr12	irgsp1_rep	CDS	3549342	3549456	.	+	0	Parent=Os12t0169700-01
Chr12	irgsp1_rep	CDS	3550235	3550378	.	+	2	Parent=Os12t0169700-01
Chr12	irgsp1_rep	CDS	3551040	3551165	.	+	2	Parent=Os12t0169700-01
Chr12	irgsp1_rep	CDS	3551421	3551572	.	+	2	Parent=Os12t0169700-01
Chr12	irgsp1_rep	CDS	3552071	3552355	.	+	0	Parent=Os12t0169700-01
Chr12	irgsp1_rep	three_prime_UTR	3552356	3552554	.	+	.	Parent=Os12t0169700-01
Chr12	irgsp1_rep	mRNA	3553654	3558229	.	-	.	ID=Os12t0169800-00;Name=Os12t0169800-00;Locus_id=Os12g0169800;CGSNL Gene Symbol=CDPK28;CGSNL Gene Name=CALCIUM-DEPENDENT PROTEIN KINASE 28;Oryzabase Gene Symbol Synonym(s)=OsCDPK28%2C OsCPK28;Oryzabase Gene Name Synonym(s)=calcium-dependent protein kinase;Note=Similar to Calcium-dependent protein kinase SK5 (EC 2.7.1.-) (CDPK).;Transcript_evidence=ab initio prediction;ORF_evidence=Q6YIH2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Calcium-binding EF-hand (IPR002048),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),EF-hand-like domain (IPR011992),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);Oryzabase=8079;TENOR=Os12t0169800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	3557620	3558229	.	-	0	Parent=Os12t0169800-00
Chr12	irgsp1_rep	CDS	3555931	3556074	.	-	2	Parent=Os12t0169800-00
Chr12	irgsp1_rep	CDS	3555688	3555840	.	-	2	Parent=Os12t0169800-00
Chr12	irgsp1_rep	CDS	3555467	3555582	.	-	2	Parent=Os12t0169800-00
Chr12	irgsp1_rep	CDS	3554259	3554426	.	-	0	Parent=Os12t0169800-00
Chr12	irgsp1_rep	CDS	3553924	3554148	.	-	0	Parent=Os12t0169800-00
Chr12	irgsp1_rep	CDS	3553654	3553818	.	-	0	Parent=Os12t0169800-00
Chr12	irgsp1_rep	mRNA	3557612	3558959	.	+	.	ID=Os12t0169950-00;Name=Os12t0169950-00;Locus_id=Os12g0169950;Note=Hypothetical gene.;Transcript_evidence=BT084847 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0169950-00;KEGG=Os12t0169950-00
Chr12	irgsp1_rep	CDS	3557612	3558331	.	+	0	Parent=Os12t0169950-00
Chr12	irgsp1_rep	three_prime_UTR	3558332	3558959	.	+	.	Parent=Os12t0169950-00
Chr12	irgsp1_rep	mRNA	3566996	3571971	.	-	.	ID=Os12t0170100-01;Name=Os12t0170100-01;Locus_id=Os12g0170100;Note=Similar to DNA-binding protein.;Transcript_evidence=AK120125 (DDBJ%2C Best hit);ORF_evidence=Q9MQV2 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013026D13;Expression=AK120125;TENOR=Os12t0170100-01;KEGG=Os12t0170100-01
Chr12	irgsp1_rep	five_prime_UTR	3571753	3571971	.	-	.	Parent=Os12t0170100-01
Chr12	irgsp1_rep	five_prime_UTR	3571157	3571219	.	-	.	Parent=Os12t0170100-01
Chr12	irgsp1_rep	CDS	3571122	3571156	.	-	0	Parent=Os12t0170100-01
Chr12	irgsp1_rep	CDS	3569793	3570342	.	-	1	Parent=Os12t0170100-01
Chr12	irgsp1_rep	CDS	3567305	3568555	.	-	0	Parent=Os12t0170100-01
Chr12	irgsp1_rep	three_prime_UTR	3566996	3567304	.	-	.	Parent=Os12t0170100-01
Chr12	irgsp1_rep	mRNA	3573479	3577071	.	-	.	ID=Os12t0170300-01;Name=Os12t0170300-01;Locus_id=Os12g0170300;Note=Similar to Sodium Bile acid symporter family protein%2C expressed.;Transcript_evidence=AK072870 (DDBJ%2C Best hit);ORF_evidence=Q2QX41 (UniProt);GO=Biological Process: sodium ion transport (GO:0006814),Cellular Component: membrane (GO:0016020),Molecular Function: bile acid:sodium symporter activity (GO:0008508);InterPro=Bile acid:sodium symporter (IPR002657);NIAS_FLcDNA=J023142A17;TENOR=Os12t0170300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	3577071	3577071	.	-	.	Parent=Os12t0170300-01
Chr12	irgsp1_rep	CDS	3576864	3577070	.	-	0	Parent=Os12t0170300-01
Chr12	irgsp1_rep	CDS	3576596	3576784	.	-	0	Parent=Os12t0170300-01
Chr12	irgsp1_rep	CDS	3576290	3576430	.	-	0	Parent=Os12t0170300-01
Chr12	irgsp1_rep	CDS	3575031	3575186	.	-	0	Parent=Os12t0170300-01
Chr12	irgsp1_rep	CDS	3574835	3574956	.	-	0	Parent=Os12t0170300-01
Chr12	irgsp1_rep	CDS	3574599	3574736	.	-	1	Parent=Os12t0170300-01
Chr12	irgsp1_rep	CDS	3574323	3574383	.	-	1	Parent=Os12t0170300-01
Chr12	irgsp1_rep	CDS	3573698	3573871	.	-	0	Parent=Os12t0170300-01
Chr12	irgsp1_rep	three_prime_UTR	3573479	3573697	.	-	.	Parent=Os12t0170300-01
Chr12	irgsp1_rep	mRNA	3580411	3582838	.	+	.	ID=Os12t0170400-01;Name=Os12t0170400-01;Locus_id=Os12g0170400;RAP-DB Gene Symbol Synonym(s)=ART1%2C STAR3;RAP-DB Gene Name Synonym(s)=ALUMINIUM RESISTANCE TRANSCRIPTION FACTOR 1%2C AL RESISTANCE TRANSCRIPTION FACTOR1%2C Al resistance transcription factor 1%2C Aluminum rhizotoxicity 1;CGSNL Gene Symbol=ART1;CGSNL Gene Name=ALUMINIUM RESISTANCE TRANSCRIPTION FACTOR 1;Oryzabase Gene Symbol Synonym(s)=ART1%2C STAR3;Oryzabase Gene Name Synonym(s)=AL RESISTANCE TRANSCRIPTION FACTOR1%2C Al resistance transcription factor 1%2C Aluminum rhizotoxicity 1%2C ALUMINUM RESISTANCE TRANSCRIPTION FACTOR1;Note=C2H2 zinc-finger transcription factor %2C Al tolerance;Transcript_evidence=AB379846 (Koshihikari);ORF_evidence=Q2QX40;GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C C2H2-like (IPR015880),Zinc finger%2C C2H2 (IPR007087),Zinc finger C2H2-type/integrase DNA-binding domain (IPR013087);Manual Curation=April 5%2C 2011;Literature_PMID=19880795;Oryzabase=9266;TENOR=Os12t0170400-01
Chr12	irgsp1_rep	five_prime_UTR	3580411	3580461	.	+	.	Parent=Os12t0170400-01
Chr12	irgsp1_rep	five_prime_UTR	3581209	3581269	.	+	.	Parent=Os12t0170400-01
Chr12	irgsp1_rep	CDS	3581270	3582667	.	+	0	Parent=Os12t0170400-01
Chr12	irgsp1_rep	three_prime_UTR	3582668	3582838	.	+	.	Parent=Os12t0170400-01
Chr12	irgsp1_rep	mRNA	3581051	3582646	.	-	.	ID=Os12t0170500-01;Name=Os12t0170500-01;Locus_id=Os12g0170500;Note=Hypothetical protein.;Transcript_evidence=AK110904 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-173-B06;Expression=AK110904;TENOR=Os12t0170500-01;KEGG=Os12t0170500-01
Chr12	irgsp1_rep	five_prime_UTR	3582644	3582646	.	-	.	Parent=Os12t0170500-01
Chr12	irgsp1_rep	CDS	3581243	3582643	.	-	0	Parent=Os12t0170500-01
Chr12	irgsp1_rep	three_prime_UTR	3581051	3581242	.	-	.	Parent=Os12t0170500-01
Chr12	irgsp1_rep	mRNA	3583428	3587353	.	+	.	ID=Os12t0170600-01;Name=Os12t0170600-01;Locus_id=Os12g0170600;Note=Similar to Alpha-1%2C4-fucosyltransferase.;Transcript_evidence=AK067033 (DDBJ%2C Best hit);ORF_evidence=Q2WBL8 (UniProt);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: fucosyltransferase activity (GO:0008417);InterPro=Glycosyl transferase%2C family 10 (IPR001503);NIAS_FLcDNA=J013089J22;Expression=AK067033;TENOR=Os12t0170600-01;KEGG=Os12t0170600-01
Chr12	irgsp1_rep	five_prime_UTR	3583428	3583474	.	+	.	Parent=Os12t0170600-01
Chr12	irgsp1_rep	CDS	3583475	3583945	.	+	0	Parent=Os12t0170600-01
Chr12	irgsp1_rep	CDS	3583992	3584111	.	+	0	Parent=Os12t0170600-01
Chr12	irgsp1_rep	CDS	3585639	3585812	.	+	0	Parent=Os12t0170600-01
Chr12	irgsp1_rep	CDS	3586360	3586929	.	+	0	Parent=Os12t0170600-01
Chr12	irgsp1_rep	three_prime_UTR	3586930	3586943	.	+	.	Parent=Os12t0170600-01
Chr12	irgsp1_rep	three_prime_UTR	3587075	3587353	.	+	.	Parent=Os12t0170600-01
Chr12	irgsp1_rep	mRNA	3592239	3597468	.	+	.	ID=Os12t0170700-01;Name=Os12t0170700-01;Locus_id=Os12g0170700;Note=Conserved hypothetical protein.;Transcript_evidence=AK058272 (DDBJ%2C Best hit);ORF_evidence=Q2QX38 (UniProt);NIAS_FLcDNA=001-013-B09;Expression=AK058272;TENOR=Os12t0170700-01;KEGG=Os12t0170700-01
Chr12	irgsp1_rep	CDS	3592239	3592332	.	+	0	Parent=Os12t0170700-01
Chr12	irgsp1_rep	CDS	3592424	3592476	.	+	2	Parent=Os12t0170700-01
Chr12	irgsp1_rep	CDS	3593820	3593996	.	+	0	Parent=Os12t0170700-01
Chr12	irgsp1_rep	CDS	3594083	3594120	.	+	0	Parent=Os12t0170700-01
Chr12	irgsp1_rep	CDS	3594351	3594438	.	+	1	Parent=Os12t0170700-01
Chr12	irgsp1_rep	CDS	3594783	3594962	.	+	0	Parent=Os12t0170700-01
Chr12	irgsp1_rep	CDS	3595054	3595162	.	+	0	Parent=Os12t0170700-01
Chr12	irgsp1_rep	CDS	3595327	3595396	.	+	2	Parent=Os12t0170700-01
Chr12	irgsp1_rep	CDS	3595473	3595620	.	+	1	Parent=Os12t0170700-01
Chr12	irgsp1_rep	CDS	3596022	3596150	.	+	0	Parent=Os12t0170700-01
Chr12	irgsp1_rep	CDS	3596245	3596370	.	+	0	Parent=Os12t0170700-01
Chr12	irgsp1_rep	CDS	3596549	3596611	.	+	0	Parent=Os12t0170700-01
Chr12	irgsp1_rep	CDS	3596905	3597150	.	+	0	Parent=Os12t0170700-01
Chr12	irgsp1_rep	three_prime_UTR	3597151	3597468	.	+	.	Parent=Os12t0170700-01
Chr12	irgsp1_rep	mRNA	3602558	3605040	.	+	.	ID=Os12t0170800-01;Name=Os12t0170800-01;Locus_id=Os12g0170800;Note=Similar to Citrate binding protein precursor.;Transcript_evidence=AK059809 (DDBJ%2C Best hit),AK104097 (DDBJ%2C Best hit);ORF_evidence=Q8H9C1 (UniProt);InterPro=Concanavalin A-like lectin/glucanase (IPR008985),Alginate lyase 2 (IPR014895);NIAS_FLcDNA=006-205-A05,006-201-D04;TENOR=Os12t0170800-01
Chr12	irgsp1_rep	five_prime_UTR	3602558	3602604	.	+	.	Parent=Os12t0170800-01
Chr12	irgsp1_rep	CDS	3602605	3602856	.	+	0	Parent=Os12t0170800-01
Chr12	irgsp1_rep	CDS	3604352	3604732	.	+	0	Parent=Os12t0170800-01
Chr12	irgsp1_rep	three_prime_UTR	3604733	3605040	.	+	.	Parent=Os12t0170800-01
Chr12	irgsp1_rep	mRNA	3619385	3626426	.	+	.	ID=Os12t0171200-01;Name=Os12t0171200-01;Locus_id=Os12g0171200;Note=Similar to tRNA adenylyltransferase-like protein.;Transcript_evidence=AK107402 (DDBJ%2C Best hit);ORF_evidence=Q94K06 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Molecular Function: RNA binding (GO:0003723),Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=Poly A polymerase%2C head domain (IPR002646);NIAS_FLcDNA=002-127-D11;TENOR=Os12t0171200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	3619385	3619735	.	+	0	Parent=Os12t0171200-01
Chr12	irgsp1_rep	CDS	3620617	3620747	.	+	0	Parent=Os12t0171200-01
Chr12	irgsp1_rep	CDS	3621130	3621247	.	+	1	Parent=Os12t0171200-01
Chr12	irgsp1_rep	CDS	3621555	3621607	.	+	0	Parent=Os12t0171200-01
Chr12	irgsp1_rep	CDS	3621711	3621760	.	+	1	Parent=Os12t0171200-01
Chr12	irgsp1_rep	CDS	3621865	3621963	.	+	2	Parent=Os12t0171200-01
Chr12	irgsp1_rep	CDS	3622464	3622573	.	+	2	Parent=Os12t0171200-01
Chr12	irgsp1_rep	CDS	3622726	3622853	.	+	0	Parent=Os12t0171200-01
Chr12	irgsp1_rep	CDS	3623024	3623114	.	+	1	Parent=Os12t0171200-01
Chr12	irgsp1_rep	CDS	3623563	3623646	.	+	0	Parent=Os12t0171200-01
Chr12	irgsp1_rep	CDS	3625087	3625149	.	+	0	Parent=Os12t0171200-01
Chr12	irgsp1_rep	CDS	3625279	3625423	.	+	0	Parent=Os12t0171200-01
Chr12	irgsp1_rep	CDS	3625563	3625727	.	+	2	Parent=Os12t0171200-01
Chr12	irgsp1_rep	CDS	3625872	3625966	.	+	2	Parent=Os12t0171200-01
Chr12	irgsp1_rep	CDS	3626049	3626150	.	+	0	Parent=Os12t0171200-01
Chr12	irgsp1_rep	three_prime_UTR	3626151	3626426	.	+	.	Parent=Os12t0171200-01
Chr12	irgsp1_rep	mRNA	3627680	3629897	.	-	.	ID=Os12t0171250-01;Name=Os12t0171250-01;Locus_id=Os12g0171250;Note=Non-protein coding transcript.;Transcript_evidence=AK288225 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090012B16;TENOR=Os12t0171250-01
Chr12	irgsp1_rep	exon	3627680	3629897	.	-	.	Parent=Os12t0171250-01
Chr12	irgsp1_rep	mRNA	3634846	3635935	.	-	.	ID=Os12t0171500-01;Name=Os12t0171500-01;Locus_id=Os12g0171500;Note=Conserved hypothetical protein.;Transcript_evidence=AK059976 (DDBJ%2C Best hit);ORF_evidence=Q2QXV2 (UniProt);NIAS_FLcDNA=006-212-A10;TENOR=Os12t0171500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	3635310	3635935	.	-	.	Parent=Os12t0171500-01
Chr12	irgsp1_rep	CDS	3635061	3635309	.	-	0	Parent=Os12t0171500-01
Chr12	irgsp1_rep	three_prime_UTR	3634846	3635060	.	-	.	Parent=Os12t0171500-01
Chr12	irgsp1_rep	mRNA	3636454	3637403	.	+	.	ID=Os12t0171600-01;Name=Os12t0171600-01;Locus_id=Os12g0171600;Note=Conserved hypothetical protein.;Transcript_evidence=AK064600 (DDBJ%2C Best hit);ORF_evidence=A2ZII5 (UniProt);NIAS_FLcDNA=002-112-H05;Expression=AK064600;TENOR=Os12t0171600-01;KEGG=Os12t0171600-01
Chr12	irgsp1_rep	five_prime_UTR	3636454	3636503	.	+	.	Parent=Os12t0171600-01
Chr12	irgsp1_rep	CDS	3636504	3636789	.	+	0	Parent=Os12t0171600-01
Chr12	irgsp1_rep	CDS	3636937	3637199	.	+	2	Parent=Os12t0171600-01
Chr12	irgsp1_rep	three_prime_UTR	3637200	3637403	.	+	.	Parent=Os12t0171600-01
Chr12	irgsp1_rep	mRNA	3639258	3643421	.	+	.	ID=Os12t0171700-01;Name=Os12t0171700-01;Locus_id=Os12g0171700;Note=Conserved hypothetical protein.;Transcript_evidence=AK101827 (DDBJ%2C Best hit);ORF_evidence=B8BNE3 (UniProt);NIAS_FLcDNA=J033068E08;Expression=AK101827;TENOR=Os12t0171700-01;KEGG=Os12t0171700-01
Chr12	irgsp1_rep	five_prime_UTR	3639258	3639399	.	+	.	Parent=Os12t0171700-01
Chr12	irgsp1_rep	five_prime_UTR	3639475	3639592	.	+	.	Parent=Os12t0171700-01
Chr12	irgsp1_rep	five_prime_UTR	3641655	3641770	.	+	.	Parent=Os12t0171700-01
Chr12	irgsp1_rep	five_prime_UTR	3641851	3642179	.	+	.	Parent=Os12t0171700-01
Chr12	irgsp1_rep	CDS	3642180	3642845	.	+	0	Parent=Os12t0171700-01
Chr12	irgsp1_rep	three_prime_UTR	3642846	3642878	.	+	.	Parent=Os12t0171700-01
Chr12	irgsp1_rep	three_prime_UTR	3643146	3643421	.	+	.	Parent=Os12t0171700-01
Chr12	irgsp1_rep	mRNA	3644208	3653650	.	-	.	ID=Os12t0171801-01;Name=Os12t0171801-01;Locus_id=Os12g0171801;Note=Hypothetical gene.;Transcript_evidence=AK287454 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J043018P18;TENOR=Os12t0171801-01;KEGG=Os12t0171801-01
Chr12	irgsp1_rep	five_prime_UTR	3653541	3653650	.	-	.	Parent=Os12t0171801-01
Chr12	irgsp1_rep	five_prime_UTR	3653077	3653211	.	-	.	Parent=Os12t0171801-01
Chr12	irgsp1_rep	five_prime_UTR	3652728	3652850	.	-	.	Parent=Os12t0171801-01
Chr12	irgsp1_rep	five_prime_UTR	3651707	3652106	.	-	.	Parent=Os12t0171801-01
Chr12	irgsp1_rep	five_prime_UTR	3646627	3646683	.	-	.	Parent=Os12t0171801-01
Chr12	irgsp1_rep	five_prime_UTR	3645275	3645342	.	-	.	Parent=Os12t0171801-01
Chr12	irgsp1_rep	five_prime_UTR	3644969	3645180	.	-	.	Parent=Os12t0171801-01
Chr12	irgsp1_rep	CDS	3644905	3644968	.	-	0	Parent=Os12t0171801-01
Chr12	irgsp1_rep	CDS	3644553	3644830	.	-	2	Parent=Os12t0171801-01
Chr12	irgsp1_rep	three_prime_UTR	3644208	3644552	.	-	.	Parent=Os12t0171801-01
Chr12	irgsp1_rep	mRNA	3650086	3650580	.	-	.	ID=Os12t0171900-01;Name=Os12t0171900-01;Locus_id=Os12g0171900;Note=Hypothetical gene.;Transcript_evidence=AK063659 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-119-B12;Expression=AK063659;TENOR=Os12t0171900-01;KEGG=Os12t0171900-01
Chr12	irgsp1_rep	CDS	3650221	3650580	.	-	0	Parent=Os12t0171900-01
Chr12	irgsp1_rep	three_prime_UTR	3650086	3650220	.	-	.	Parent=Os12t0171900-01
Chr12	irgsp1_rep	mRNA	3662338	3662561	.	+	.	ID=Os12t0172150-00;Name=Os12t0172150-00;Locus_id=Os12g0172150;Note=Hypothetical protein.;Transcript_evidence=EU962842 (DDBJ);ORF_evidence=GeneMark;TENOR=Os12t0172150-00
Chr12	irgsp1_rep	CDS	3662338	3662561	.	+	0	Parent=Os12t0172150-00
Chr12	irgsp1_rep	mRNA	3668503	3670289	.	+	.	ID=Os12t0172400-00;Name=Os12t0172400-00;Locus_id=Os12g0172400;Note=Hypothetical conserved gene.;Transcript_evidence=CT835587 (DDBJ%2C Best hit);ORF_evidence=NP_001066280.1 (RefSeq);InterPro=Domain of unknown function DUF1618 (IPR011676);TENOR=Os12t0172400-00;KEGG=Os12t0172400-00
Chr12	irgsp1_rep	five_prime_UTR	3668503	3668519	.	+	.	Parent=Os12t0172400-00
Chr12	irgsp1_rep	CDS	3668520	3668610	.	+	0	Parent=Os12t0172400-00
Chr12	irgsp1_rep	CDS	3668700	3668859	.	+	2	Parent=Os12t0172400-00
Chr12	irgsp1_rep	CDS	3669322	3669919	.	+	1	Parent=Os12t0172400-00
Chr12	irgsp1_rep	CDS	3670193	3670210	.	+	0	Parent=Os12t0172400-00
Chr12	irgsp1_rep	three_prime_UTR	3670211	3670289	.	+	.	Parent=Os12t0172400-00
Chr12	irgsp1_rep	mRNA	3673051	3679299	.	-	.	ID=Os12t0172500-01;Name=Os12t0172500-01;Locus_id=Os12g0172500;Oryzabase Gene Symbol Synonym(s)=OsWD40-195;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK101515 (DDBJ%2C Best hit);ORF_evidence=NP_001147030.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J033046F12;Oryzabase=10876;Expression=AK101515;TENOR=Os12t0172500-01;KEGG=Os12t0172500-01
Chr12	irgsp1_rep	five_prime_UTR	3679022	3679299	.	-	.	Parent=Os12t0172500-01
Chr12	irgsp1_rep	CDS	3678845	3679021	.	-	0	Parent=Os12t0172500-01
Chr12	irgsp1_rep	CDS	3678107	3678421	.	-	0	Parent=Os12t0172500-01
Chr12	irgsp1_rep	CDS	3677916	3678024	.	-	0	Parent=Os12t0172500-01
Chr12	irgsp1_rep	CDS	3677728	3677830	.	-	2	Parent=Os12t0172500-01
Chr12	irgsp1_rep	CDS	3676359	3676446	.	-	1	Parent=Os12t0172500-01
Chr12	irgsp1_rep	CDS	3676177	3676260	.	-	0	Parent=Os12t0172500-01
Chr12	irgsp1_rep	CDS	3675459	3675555	.	-	0	Parent=Os12t0172500-01
Chr12	irgsp1_rep	CDS	3675273	3675360	.	-	2	Parent=Os12t0172500-01
Chr12	irgsp1_rep	CDS	3674325	3674430	.	-	1	Parent=Os12t0172500-01
Chr12	irgsp1_rep	CDS	3674141	3674233	.	-	0	Parent=Os12t0172500-01
Chr12	irgsp1_rep	CDS	3673291	3673722	.	-	0	Parent=Os12t0172500-01
Chr12	irgsp1_rep	three_prime_UTR	3673051	3673290	.	-	.	Parent=Os12t0172500-01
Chr12	irgsp1_rep	mRNA	3709505	3711534	.	-	.	ID=Os12t0173125-01;Name=Os12t0173125-01;Locus_id=Os12g0173125;Note=Hypothetical gene.;Transcript_evidence=AK241066 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065065N20;TENOR=Os12t0173125-01
Chr12	irgsp1_rep	five_prime_UTR	3710774	3711534	.	-	.	Parent=Os12t0173125-01
Chr12	irgsp1_rep	CDS	3710645	3710773	.	-	0	Parent=Os12t0173125-01
Chr12	irgsp1_rep	CDS	3709505	3709884	.	-	0	Parent=Os12t0173125-01
Chr12	irgsp1_rep	mRNA	3709508	3711528	.	+	.	ID=Os12t0173300-00;Name=Os12t0173300-00;Locus_id=Os12g0173300;Oryzabase Gene Symbol Synonym(s)=OsTCP28%2C TCP28;Oryzabase Gene Name Synonym(s)=TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 28;Note=Transcription factor%2C TCP domain containing protein.;Transcript_evidence=AK355813 (DDBJ);ORF_evidence=Q53PH2 (UniProt);InterPro=Transcription factor%2C TCP (IPR005333),Transcription factor TCP subgroup (IPR017887);Oryzabase=12391;TENOR=Os12t0173300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	3709508	3709751	.	+	.	Parent=Os12t0173300-00
Chr12	irgsp1_rep	CDS	3709752	3711008	.	+	0	Parent=Os12t0173300-00
Chr12	irgsp1_rep	three_prime_UTR	3711009	3711528	.	+	.	Parent=Os12t0173300-00
Chr12	irgsp1_rep	mRNA	3718814	3720267	.	+	.	ID=Os12t0173366-01;Name=Os12t0173366-01;Locus_id=Os12g0173366;Note=Preprotein translocase Sec%2C Sec61-beta subunit%2C eukarya domain containing protein.;Transcript_evidence=AK240894 (DDBJ%2C Best hit);ORF_evidence=NP_001151814.1 (RefSeq);InterPro=Preprotein translocase Sec%2C Sec61-beta subunit (IPR005609),Preprotein translocase Sec%2C Sec61-beta subunit%2C eukarya (IPR016482);NIAS_FLcDNA=J065030N08;TENOR=Os12t0173366-01;KEGG=Os12t0173366-01
Chr12	irgsp1_rep	five_prime_UTR	3718814	3718849	.	+	.	Parent=Os12t0173366-01
Chr12	irgsp1_rep	five_prime_UTR	3719814	3719827	.	+	.	Parent=Os12t0173366-01
Chr12	irgsp1_rep	CDS	3719828	3720079	.	+	0	Parent=Os12t0173366-01
Chr12	irgsp1_rep	three_prime_UTR	3720080	3720267	.	+	.	Parent=Os12t0173366-01
Chr12	irgsp1_rep	mRNA	3719783	3720043	.	-	.	ID=Os12t0173388-00;Name=Os12t0173388-00;Locus_id=Os12g0173388;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os12t0173388-00;KEGG=Os12t0173388-00
Chr12	irgsp1_rep	CDS	3719783	3720043	.	-	0	Parent=Os12t0173388-00
Chr12	irgsp1_rep	mRNA	3723692	3726842	.	-	.	ID=Os12t0173400-01;Name=Os12t0173400-01;Locus_id=Os12g0173400;Note=Conserved hypothetical protein.;Transcript_evidence=AK059260 (DDBJ%2C Best hit);ORF_evidence=A2ZIJ7 (UniProt);NIAS_FLcDNA=001-025-A07;Expression=AK059260;TENOR=Os12t0173400-01;KEGG=Os12t0173400-01
Chr12	irgsp1_rep	five_prime_UTR	3726754	3726842	.	-	.	Parent=Os12t0173400-01
Chr12	irgsp1_rep	CDS	3726504	3726753	.	-	0	Parent=Os12t0173400-01
Chr12	irgsp1_rep	CDS	3725027	3725254	.	-	2	Parent=Os12t0173400-01
Chr12	irgsp1_rep	CDS	3723885	3724507	.	-	2	Parent=Os12t0173400-01
Chr12	irgsp1_rep	three_prime_UTR	3723692	3723884	.	-	.	Parent=Os12t0173400-01
Chr12	irgsp1_rep	mRNA	3743734	3749394	.	+	.	ID=Os12t0174000-01;Name=Os12t0174000-01;Locus_id=Os12g0174000;Note=Conserved hypothetical protein.;Transcript_evidence=AK121492 (DDBJ%2C Best hit);ORF_evidence=A2ZIJ8 (UniProt);NIAS_FLcDNA=J033000E11;TENOR=Os12t0174000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	3743734	3744408	.	+	0	Parent=Os12t0174000-01
Chr12	irgsp1_rep	three_prime_UTR	3744409	3748484	.	+	.	Parent=Os12t0174000-01
Chr12	irgsp1_rep	three_prime_UTR	3748868	3749394	.	+	.	Parent=Os12t0174000-01
Chr12	irgsp1_rep	mRNA	3753603	3758484	.	+	.	ID=Os12t0174100-01;Name=Os12t0174100-01;Locus_id=Os12g0174100;Note=Protein of unknown function DUF246%2C plant family protein.;Transcript_evidence=AK110878 (DDBJ%2C Best hit);ORF_evidence=B9GC44 (UniProt);InterPro=GDP-fucose protein O-fucosyltransferase (IPR019378),O-fucosyltransferase%2C plant (IPR024709);NIAS_FLcDNA=002-172-G05;Expression=AK110878;TENOR=Os12t0174100-01;KEGG=Os12t0174100-01
Chr12	irgsp1_rep	five_prime_UTR	3753603	3753811	.	+	.	Parent=Os12t0174100-01
Chr12	irgsp1_rep	CDS	3753812	3753988	.	+	0	Parent=Os12t0174100-01
Chr12	irgsp1_rep	CDS	3754690	3754762	.	+	0	Parent=Os12t0174100-01
Chr12	irgsp1_rep	CDS	3754874	3754941	.	+	2	Parent=Os12t0174100-01
Chr12	irgsp1_rep	CDS	3755559	3755647	.	+	0	Parent=Os12t0174100-01
Chr12	irgsp1_rep	CDS	3756090	3756287	.	+	1	Parent=Os12t0174100-01
Chr12	irgsp1_rep	CDS	3756365	3756569	.	+	1	Parent=Os12t0174100-01
Chr12	irgsp1_rep	CDS	3756655	3756822	.	+	0	Parent=Os12t0174100-01
Chr12	irgsp1_rep	CDS	3757156	3757323	.	+	0	Parent=Os12t0174100-01
Chr12	irgsp1_rep	CDS	3757509	3757699	.	+	0	Parent=Os12t0174100-01
Chr12	irgsp1_rep	CDS	3758110	3758248	.	+	1	Parent=Os12t0174100-01
Chr12	irgsp1_rep	three_prime_UTR	3758249	3758484	.	+	.	Parent=Os12t0174100-01
Chr12	irgsp1_rep	mRNA	3761729	3762417	.	-	.	ID=Os12t0174200-01;Name=Os12t0174200-01;Locus_id=Os12g0174200;Note=Conserved hypothetical protein.;Transcript_evidence=AK063010 (DDBJ%2C Best hit);ORF_evidence=A3CFE8 (UniProt);NIAS_FLcDNA=001-110-A04;Expression=AK063010;TENOR=Os12t0174200-01;KEGG=Os12t0174200-01
Chr12	irgsp1_rep	five_prime_UTR	3762343	3762417	.	-	.	Parent=Os12t0174200-01
Chr12	irgsp1_rep	CDS	3762001	3762342	.	-	0	Parent=Os12t0174200-01
Chr12	irgsp1_rep	three_prime_UTR	3761729	3762000	.	-	.	Parent=Os12t0174200-01
Chr12	irgsp1_rep	mRNA	3777480	3778331	.	+	.	ID=Os12t0174300-00;Name=Os12t0174300-00;Locus_id=Os12g0174300;Note=Conserved hypothetical protein.;Transcript_evidence=EU957227 (DDBJ);ORF_evidence=NP_001066287.1 (RefSeq);TENOR=Os12t0174300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	3777480	3778331	.	+	0	Parent=Os12t0174300-00
Chr12	irgsp1_rep	mRNA	3789999	3790567	.	+	.	ID=Os12t0174700-00;Name=Os12t0174700-00;Locus_id=Os12g0174700;Note=Similar to disease resistance response protein 206.;Transcript_evidence=CT835590 (DDBJ%2C Best hit);ORF_evidence=GeneMark;InterPro=Plant disease resistance response protein (IPR004265);TENOR=Os12t0174700-00;KEGG=Os12t0174700-00
Chr12	irgsp1_rep	CDS	3789999	3790457	.	+	0	Parent=Os12t0174700-00
Chr12	irgsp1_rep	three_prime_UTR	3790458	3790567	.	+	.	Parent=Os12t0174700-00
Chr12	irgsp1_rep	mRNA	3792415	3797468	.	-	.	ID=Os12t0174800-01;Name=Os12t0174800-01;Locus_id=Os12g0174800;RAP-DB Gene Symbol Synonym(s)=OsPTP1;RAP-DB Gene Name Synonym(s)=protein tyrosine phosphatase 1;Oryzabase Gene Symbol Synonym(s)=OsPP127%2C OsPTP1%2C PTP1;Oryzabase Gene Name Synonym(s)=Protein phosphatase 127%2C protein tyrosine phosphatase 1;Note=Protein tyrosine phosphatase%2C Response to abiotic stress%2C Defence response;Transcript_evidence=AK106448;ORF_evidence=Q2QX07;GO=Biological Process: protein dephosphorylation (GO:0006470),Biological Process: dephosphorylation (GO:0016311),Molecular Function: protein tyrosine phosphatase activity (GO:0004725),Molecular Function: phosphatase activity (GO:0016791);InterPro=Protein-tyrosine phosphatase-like (IPR029021),PTP type protein phosphatase (IPR000242),Protein-tyrosine phosphatase%2C catalytic (IPR003595),Tyrosine specific protein phosphatases domain (IPR000387),Protein-tyrosine phosphatase%2C active site (IPR016130);NIAS_FLcDNA=002-103-E09;Manual Curation=October 8%2C 2020;Literature_PMID=26485146;Oryzabase=18663;Expression=AK106448;TENOR=Os12t0174800-01;KEGG=Os12t0174800-01
Chr12	irgsp1_rep	five_prime_UTR	3797327	3797468	.	-	.	Parent=Os12t0174800-01
Chr12	irgsp1_rep	CDS	3797129	3797326	.	-	0	Parent=Os12t0174800-01
Chr12	irgsp1_rep	CDS	3795720	3795807	.	-	0	Parent=Os12t0174800-01
Chr12	irgsp1_rep	CDS	3795522	3795604	.	-	2	Parent=Os12t0174800-01
Chr12	irgsp1_rep	CDS	3795289	3795426	.	-	0	Parent=Os12t0174800-01
Chr12	irgsp1_rep	CDS	3793815	3793940	.	-	0	Parent=Os12t0174800-01
Chr12	irgsp1_rep	CDS	3793184	3793326	.	-	0	Parent=Os12t0174800-01
Chr12	irgsp1_rep	CDS	3792965	3793106	.	-	1	Parent=Os12t0174800-01
Chr12	irgsp1_rep	CDS	3792612	3792680	.	-	0	Parent=Os12t0174800-01
Chr12	irgsp1_rep	three_prime_UTR	3792415	3792611	.	-	.	Parent=Os12t0174800-01
Chr12	irgsp1_rep	mRNA	3792161	3797454	.	-	.	ID=Os12t0174800-02;Name=Os12t0174800-02;Locus_id=Os12g0174800;Oryzabase Gene Symbol Synonym(s)=OsPP127%2C OsPTP1%2C PTP1;Oryzabase Gene Name Synonym(s)=Protein phosphatase 127%2C protein tyrosine phosphatase 1;Note=Protein-tyrosine phosphatase%2C receptor/non-receptor type domain containing protein.;Transcript_evidence=AK064263 (DDBJ%2C Best hit);ORF_evidence=NP_001149088.1 (RefSeq);GO=Biological Process: protein dephosphorylation (GO:0006470),Biological Process: dephosphorylation (GO:0016311),Molecular Function: protein tyrosine phosphatase activity (GO:0004725),Molecular Function: phosphatase activity (GO:0016791);InterPro=Protein-tyrosine phosphatase%2C receptor/non-receptor type (IPR000242),Protein-tyrosine/Dual-specificity phosphatase (IPR000387),Protein-tyrosine phosphatase%2C active site (IPR016130);NIAS_FLcDNA=002-105-D08;Oryzabase=18663;Expression=AK064263;TENOR=Os12t0174800-02;KEGG=Os12t0174800-02
Chr12	irgsp1_rep	five_prime_UTR	3797327	3797454	.	-	.	Parent=Os12t0174800-02
Chr12	irgsp1_rep	CDS	3797129	3797326	.	-	0	Parent=Os12t0174800-02
Chr12	irgsp1_rep	CDS	3795720	3795807	.	-	0	Parent=Os12t0174800-02
Chr12	irgsp1_rep	CDS	3795522	3795604	.	-	2	Parent=Os12t0174800-02
Chr12	irgsp1_rep	CDS	3795289	3795426	.	-	0	Parent=Os12t0174800-02
Chr12	irgsp1_rep	CDS	3793815	3793940	.	-	0	Parent=Os12t0174800-02
Chr12	irgsp1_rep	CDS	3793184	3793326	.	-	0	Parent=Os12t0174800-02
Chr12	irgsp1_rep	CDS	3792965	3793106	.	-	1	Parent=Os12t0174800-02
Chr12	irgsp1_rep	CDS	3792612	3792680	.	-	0	Parent=Os12t0174800-02
Chr12	irgsp1_rep	three_prime_UTR	3792596	3792611	.	-	.	Parent=Os12t0174800-02
Chr12	irgsp1_rep	three_prime_UTR	3792161	3792482	.	-	.	Parent=Os12t0174800-02
Chr12	irgsp1_rep	mRNA	3796603	3797440	.	-	.	ID=Os12t0174800-03;Name=Os12t0174800-03;Locus_id=Os12g0174800;Oryzabase Gene Symbol Synonym(s)=OsPP127%2C OsPTP1%2C PTP1;Oryzabase Gene Name Synonym(s)=Protein phosphatase 127%2C protein tyrosine phosphatase 1;Note=Conserved hypothetical protein.;Transcript_evidence=AK108447 (DDBJ%2C Best hit);ORF_evidence=Q5Z6D7 (UniProt);NIAS_FLcDNA=002-143-C05;Oryzabase=18663;TENOR=Os12t0174800-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	3797439	3797440	.	-	.	Parent=Os12t0174800-03
Chr12	irgsp1_rep	CDS	3797082	3797438	.	-	0	Parent=Os12t0174800-03
Chr12	irgsp1_rep	three_prime_UTR	3796603	3797081	.	-	.	Parent=Os12t0174800-03
Chr12	irgsp1_rep	mRNA	3840945	3842155	.	+	.	ID=Os12t0175400-01;Name=Os12t0175400-01;Locus_id=Os12g0175400;CGSNL Gene Symbol=DLN254;CGSNL Gene Name=DLN REPRESSOR 254;Oryzabase Gene Symbol Synonym(s)=R2R3-MYB%2C OsDLN254;Oryzabase Gene Name Synonym(s)=DLN repressor 254%2C DLN motif protein 254;Note=Similar to OSMYB2.;Transcript_evidence=AK063027 (DDBJ%2C Best hit);ORF_evidence=O23890 (UniProt);NIAS_FLcDNA=001-110-B12;Oryzabase=16310;TENOR=Os12t0175400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	3840945	3840946	.	+	.	Parent=Os12t0175400-01
Chr12	irgsp1_rep	CDS	3840947	3841134	.	+	0	Parent=Os12t0175400-01
Chr12	irgsp1_rep	CDS	3841243	3841372	.	+	1	Parent=Os12t0175400-01
Chr12	irgsp1_rep	CDS	3841449	3842018	.	+	0	Parent=Os12t0175400-01
Chr12	irgsp1_rep	three_prime_UTR	3842019	3842155	.	+	.	Parent=Os12t0175400-01
Chr12	irgsp1_rep	mRNA	3849391	3853357	.	-	.	ID=Os12t0175500-01;Name=Os12t0175500-01;Locus_id=Os12g0175500;CGSNL Gene Symbol=GRX27;CGSNL Gene Name=GLUTAREDOXIN 27;Oryzabase Gene Symbol Synonym(s)=OsGRX27;Oryzabase Gene Name Synonym(s)=glutaredoxin 27;Note=Similar to Glutaredoxin-like protein.;Transcript_evidence=AK060940 (DDBJ%2C Best hit);ORF_evidence=Q2QX01 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin (IPR002109),Monothiol glutaredoxin-related (IPR004480),Thioredoxin-like fold (IPR012336);NIAS_FLcDNA=006-201-C08;Oryzabase=13584;Expression=AK060940;TENOR=Os12t0175500-01;KEGG=Os12t0175500-01
Chr12	irgsp1_rep	five_prime_UTR	3853352	3853357	.	-	.	Parent=Os12t0175500-01
Chr12	irgsp1_rep	CDS	3853001	3853351	.	-	0	Parent=Os12t0175500-01
Chr12	irgsp1_rep	CDS	3849703	3850209	.	-	0	Parent=Os12t0175500-01
Chr12	irgsp1_rep	three_prime_UTR	3849391	3849702	.	-	.	Parent=Os12t0175500-01
Chr12	irgsp1_rep	mRNA	3853810	3854330	.	+	.	ID=Os12t0175600-00;Name=Os12t0175600-00;Locus_id=Os12g0175600;Note=Conserved hypothetical protein.;Transcript_evidence=EU969143 (DDBJ);ORF_evidence=B9FUQ8 (UniProt);TENOR=Os12t0175600-00
Chr12	irgsp1_rep	CDS	3853810	3854250	.	+	0	Parent=Os12t0175600-00
Chr12	irgsp1_rep	three_prime_UTR	3854251	3854330	.	+	.	Parent=Os12t0175600-00
Chr12	irgsp1_rep	mRNA	3855819	3860795	.	+	.	ID=Os12t0175700-01;Name=Os12t0175700-01;Locus_id=Os12g0175700;Note=Nonaspanin (TM9SF) family protein.;Transcript_evidence=AK069143 (DDBJ%2C Best hit);ORF_evidence=B6SY54 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Nonaspanin (TM9SF) (IPR004240);NIAS_FLcDNA=J023004K23;Expression=AK069143;TENOR=Os12t0175700-01;KEGG=Os12t0175700-01
Chr12	irgsp1_rep	five_prime_UTR	3855819	3855870	.	+	.	Parent=Os12t0175700-01
Chr12	irgsp1_rep	CDS	3855871	3855996	.	+	0	Parent=Os12t0175700-01
Chr12	irgsp1_rep	CDS	3856879	3857071	.	+	0	Parent=Os12t0175700-01
Chr12	irgsp1_rep	CDS	3857188	3857292	.	+	2	Parent=Os12t0175700-01
Chr12	irgsp1_rep	CDS	3857410	3857427	.	+	2	Parent=Os12t0175700-01
Chr12	irgsp1_rep	CDS	3857523	3857611	.	+	2	Parent=Os12t0175700-01
Chr12	irgsp1_rep	CDS	3857702	3857854	.	+	0	Parent=Os12t0175700-01
Chr12	irgsp1_rep	CDS	3858029	3858163	.	+	0	Parent=Os12t0175700-01
Chr12	irgsp1_rep	CDS	3858275	3858441	.	+	0	Parent=Os12t0175700-01
Chr12	irgsp1_rep	CDS	3859175	3859269	.	+	1	Parent=Os12t0175700-01
Chr12	irgsp1_rep	CDS	3859477	3859850	.	+	2	Parent=Os12t0175700-01
Chr12	irgsp1_rep	CDS	3860083	3860356	.	+	0	Parent=Os12t0175700-01
Chr12	irgsp1_rep	CDS	3860446	3860513	.	+	2	Parent=Os12t0175700-01
Chr12	irgsp1_rep	three_prime_UTR	3860514	3860795	.	+	.	Parent=Os12t0175700-01
Chr12	irgsp1_rep	mRNA	3857591	3863903	.	-	.	ID=Os12t0175800-01;Name=Os12t0175800-01;Locus_id=Os12g0175800;Note=Hypothetical gene.;Transcript_evidence=AK100895 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023131B19;Expression=AK100895;TENOR=Os12t0175800-01;KEGG=Os12t0175800-01
Chr12	irgsp1_rep	five_prime_UTR	3863902	3863903	.	-	.	Parent=Os12t0175800-01
Chr12	irgsp1_rep	CDS	3863567	3863901	.	-	0	Parent=Os12t0175800-01
Chr12	irgsp1_rep	CDS	3858962	3858992	.	-	1	Parent=Os12t0175800-01
Chr12	irgsp1_rep	three_prime_UTR	3858920	3858961	.	-	.	Parent=Os12t0175800-01
Chr12	irgsp1_rep	three_prime_UTR	3858792	3858804	.	-	.	Parent=Os12t0175800-01
Chr12	irgsp1_rep	three_prime_UTR	3858564	3858650	.	-	.	Parent=Os12t0175800-01
Chr12	irgsp1_rep	three_prime_UTR	3857591	3858465	.	-	.	Parent=Os12t0175800-01
Chr12	irgsp1_rep	mRNA	3861470	3862853	.	-	.	ID=Os12t0175900-00;Name=Os12t0175900-00;Locus_id=Os12g0175900;Note=Similar to RNase P subunit p30 family protein.;Transcript_evidence=AK371588 (DDBJ);ORF_evidence=Q2QYZ6 (UniProt);GO=Biological Process: tRNA processing (GO:0008033),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ribonuclease activity (GO:0004540);InterPro=RNase P subunit p30 (IPR002738),Polymerase/histidinol phosphatase-like (IPR016195);TENOR=Os12t0175900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	3862248	3862853	.	-	0	Parent=Os12t0175900-00
Chr12	irgsp1_rep	CDS	3861946	3862103	.	-	0	Parent=Os12t0175900-00
Chr12	irgsp1_rep	CDS	3861600	3861834	.	-	1	Parent=Os12t0175900-00
Chr12	irgsp1_rep	three_prime_UTR	3861470	3861599	.	-	.	Parent=Os12t0175900-00
Chr12	irgsp1_rep	mRNA	3864215	3864698	.	+	.	ID=Os12t0176100-00;Name=Os12t0176100-00;Locus_id=Os12g0176100;Note=Hypothetical gene.;Transcript_evidence=BT063109 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0176100-00;KEGG=Os12t0176100-00
Chr12	irgsp1_rep	five_prime_UTR	3864215	3864221	.	+	.	Parent=Os12t0176100-00
Chr12	irgsp1_rep	CDS	3864222	3864698	.	+	0	Parent=Os12t0176100-00
Chr12	irgsp1_rep	mRNA	3867731	3869803	.	+	.	ID=Os12t0176200-01;Name=Os12t0176200-01;Locus_id=Os12g0176200;CGSNL Gene Symbol=ISC14;CGSNL Gene Name=IRON-SULFUR CLUSTER PROTEIN 14;Oryzabase Gene Symbol Synonym(s)=OsISC14;Oryzabase Gene Name Synonym(s)=Iron-sulfur cluster protein 14;Note=Similar to Nitrogen fixation like protein.;Transcript_evidence=AK071874 (DDBJ%2C Best hit);ORF_evidence=Q84LK7 (UniProt);GO=Biological Process: iron-sulfur cluster assembly (GO:0016226),Molecular Function: iron ion binding (GO:0005506),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=NIF system FeS cluster assembly%2C NifU%2C C-terminal (IPR001075);NIAS_FLcDNA=J023121E22;Oryzabase=13429;Expression=AK071874;TENOR=Os12t0176200-01;KEGG=Os12t0176200-01
Chr12	irgsp1_rep	five_prime_UTR	3867731	3867812	.	+	.	Parent=Os12t0176200-01
Chr12	irgsp1_rep	CDS	3867813	3867893	.	+	0	Parent=Os12t0176200-01
Chr12	irgsp1_rep	CDS	3868147	3868237	.	+	0	Parent=Os12t0176200-01
Chr12	irgsp1_rep	CDS	3868411	3868727	.	+	2	Parent=Os12t0176200-01
Chr12	irgsp1_rep	CDS	3869379	3869570	.	+	0	Parent=Os12t0176200-01
Chr12	irgsp1_rep	three_prime_UTR	3869571	3869803	.	+	.	Parent=Os12t0176200-01
Chr12	irgsp1_rep	mRNA	3870944	3871559	.	-	.	ID=Os12t0176300-01;Name=Os12t0176300-01;Locus_id=Os12g0176300;Note=Conserved hypothetical protein.;Transcript_evidence=AK105185 (DDBJ%2C Best hit);ORF_evidence=B8BNF6 (UniProt);NIAS_FLcDNA=001-106-D10;TENOR=Os12t0176300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	3871424	3871559	.	-	.	Parent=Os12t0176300-01
Chr12	irgsp1_rep	CDS	3871247	3871423	.	-	0	Parent=Os12t0176300-01
Chr12	irgsp1_rep	three_prime_UTR	3870944	3871246	.	-	.	Parent=Os12t0176300-01
Chr12	irgsp1_rep	mRNA	3873379	3877258	.	+	.	ID=Os12t0176500-01;Name=Os12t0176500-01;Locus_id=Os12g0176500;CGSNL Gene Symbol=RFC2;CGSNL Gene Name=REPLICATION FACTOR C SUBUNIT 2;Oryzabase Gene Symbol Synonym(s)=OsRFC2;Oryzabase Gene Name Synonym(s)=replication factor C subunit 2%2C replication factor C2;Note=Similar to Replication factor C subunit RFC4.;Transcript_evidence=AK103718 (DDBJ%2C Best hit);ORF_evidence=NP_001148581.1 (RefSeq);GO=Biological Process: DNA replication (GO:0006260),Cellular Component: DNA replication factor C complex (GO:0005663),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA clamp loader activity (GO:0003689),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),DNA polymerase III%2C clamp loader complex%2C gamma/delta/delta subunit%2C C-terminal (IPR008921),Replication factor C (IPR013748);NIAS_FLcDNA=J033138A02;Oryzabase=21294;Expression=AK103718;TENOR=Os12t0176500-01;KEGG=Os12t0176500-01
Chr12	irgsp1_rep	five_prime_UTR	3873379	3873476	.	+	.	Parent=Os12t0176500-01
Chr12	irgsp1_rep	CDS	3873477	3873520	.	+	0	Parent=Os12t0176500-01
Chr12	irgsp1_rep	CDS	3873645	3873723	.	+	1	Parent=Os12t0176500-01
Chr12	irgsp1_rep	CDS	3873817	3873896	.	+	0	Parent=Os12t0176500-01
Chr12	irgsp1_rep	CDS	3874870	3874989	.	+	1	Parent=Os12t0176500-01
Chr12	irgsp1_rep	CDS	3875072	3875141	.	+	1	Parent=Os12t0176500-01
Chr12	irgsp1_rep	CDS	3875220	3875293	.	+	0	Parent=Os12t0176500-01
Chr12	irgsp1_rep	CDS	3875375	3875495	.	+	1	Parent=Os12t0176500-01
Chr12	irgsp1_rep	CDS	3875582	3875644	.	+	0	Parent=Os12t0176500-01
Chr12	irgsp1_rep	CDS	3875730	3875789	.	+	0	Parent=Os12t0176500-01
Chr12	irgsp1_rep	CDS	3876138	3876263	.	+	0	Parent=Os12t0176500-01
Chr12	irgsp1_rep	CDS	3876340	3876423	.	+	0	Parent=Os12t0176500-01
Chr12	irgsp1_rep	CDS	3876894	3876992	.	+	0	Parent=Os12t0176500-01
Chr12	irgsp1_rep	three_prime_UTR	3876993	3877258	.	+	.	Parent=Os12t0176500-01
Chr12	irgsp1_rep	mRNA	3879249	3885072	.	+	.	ID=Os12t0176700-00;Name=Os12t0176700-00;Locus_id=Os12g0176700;Oryzabase Gene Symbol Synonym(s)=OsCHB701%2C CHB701;Oryzabase Gene Name Synonym(s)=SWIRM domain-containing protein CHB701;Note=Similar to SWIRM domain containing protein%2C expressed.;Transcript_evidence=BT068964 (DDBJ);ORF_evidence=Q2QWZ2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),SWIRM (IPR007526),Homeodomain-like (IPR009057),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),SANT%2C eukarya (IPR017884);Oryzabase=12516;TENOR=Os12t0176700-00;KEGG=Os12t0176700-00
Chr12	irgsp1_rep	CDS	3879249	3880095	.	+	0	Parent=Os12t0176700-00
Chr12	irgsp1_rep	CDS	3880200	3880759	.	+	2	Parent=Os12t0176700-00
Chr12	irgsp1_rep	CDS	3881642	3881996	.	+	0	Parent=Os12t0176700-00
Chr12	irgsp1_rep	CDS	3882114	3882184	.	+	2	Parent=Os12t0176700-00
Chr12	irgsp1_rep	CDS	3882650	3882738	.	+	0	Parent=Os12t0176700-00
Chr12	irgsp1_rep	CDS	3882921	3882973	.	+	1	Parent=Os12t0176700-00
Chr12	irgsp1_rep	CDS	3883066	3883208	.	+	2	Parent=Os12t0176700-00
Chr12	irgsp1_rep	CDS	3884358	3884615	.	+	0	Parent=Os12t0176700-00
Chr12	irgsp1_rep	CDS	3884757	3884939	.	+	0	Parent=Os12t0176700-00
Chr12	irgsp1_rep	three_prime_UTR	3884940	3885072	.	+	.	Parent=Os12t0176700-00
Chr12	irgsp1_rep	mRNA	3885396	3889693	.	-	.	ID=Os12t0176800-01;Name=Os12t0176800-01;Locus_id=Os12g0176800;Note=Similar to HeteroChromatin protein (Fragment).;Transcript_evidence=AK069023 (DDBJ%2C Best hit);ORF_evidence=B6TNU0 (UniProt);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Protein synthesis factor%2C GTP-binding (IPR000795),Translation elongation factor EFTu/EF1A%2C domain 2 (IPR004161),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Translation elongation factor EF1A/initiation factor IF2gamma%2C C-terminal (IPR009001),Translation initiation factor 2%2C gamma subunit%2C C-terminal (IPR015256);NIAS_FLcDNA=J023003F18;TENOR=Os12t0176800-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	3889548	3889693	.	-	.	Parent=Os12t0176800-01
Chr12	irgsp1_rep	five_prime_UTR	3889003	3889010	.	-	.	Parent=Os12t0176800-01
Chr12	irgsp1_rep	CDS	3888897	3889002	.	-	0	Parent=Os12t0176800-01
Chr12	irgsp1_rep	CDS	3888244	3888305	.	-	2	Parent=Os12t0176800-01
Chr12	irgsp1_rep	CDS	3887685	3887797	.	-	0	Parent=Os12t0176800-01
Chr12	irgsp1_rep	CDS	3887360	3887462	.	-	1	Parent=Os12t0176800-01
Chr12	irgsp1_rep	CDS	3886774	3887001	.	-	0	Parent=Os12t0176800-01
Chr12	irgsp1_rep	CDS	3886475	3886693	.	-	0	Parent=Os12t0176800-01
Chr12	irgsp1_rep	CDS	3886125	3886385	.	-	0	Parent=Os12t0176800-01
Chr12	irgsp1_rep	CDS	3885746	3886048	.	-	0	Parent=Os12t0176800-01
Chr12	irgsp1_rep	three_prime_UTR	3885396	3885745	.	-	.	Parent=Os12t0176800-01
Chr12	irgsp1_rep	mRNA	3910022	3912595	.	+	.	ID=Os12t0177200-01;Name=Os12t0177200-01;Locus_id=Os12g0177200;Note=Conserved hypothetical protein.;Transcript_evidence=AK064278 (DDBJ%2C Best hit);ORF_evidence=B9GCI0 (UniProt);NIAS_FLcDNA=002-105-F10;TENOR=Os12t0177200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	3910022	3910762	.	+	.	Parent=Os12t0177200-01
Chr12	irgsp1_rep	CDS	3910763	3910903	.	+	0	Parent=Os12t0177200-01
Chr12	irgsp1_rep	three_prime_UTR	3910904	3912595	.	+	.	Parent=Os12t0177200-01
Chr12	irgsp1_rep	mRNA	3932583	3935899	.	+	.	ID=Os12t0177500-01;Name=Os12t0177500-01;Locus_id=Os12g0177500;Oryzabase Gene Symbol Synonym(s)=OsAsp3;Oryzabase Gene Name Synonym(s)=aspartic protease 3;Note=Peptidase A1 domain containing protein.;Transcript_evidence=AK064771 (DDBJ%2C Best hit);ORF_evidence=Q2QWY6 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C active site (IPR001969),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J013000A17;Oryzabase=13347;Expression=AK064771;TENOR=Os12t0177500-01;KEGG=Os12t0177500-01
Chr12	irgsp1_rep	five_prime_UTR	3932583	3932645	.	+	.	Parent=Os12t0177500-01
Chr12	irgsp1_rep	CDS	3932646	3932812	.	+	0	Parent=Os12t0177500-01
Chr12	irgsp1_rep	CDS	3933016	3933133	.	+	1	Parent=Os12t0177500-01
Chr12	irgsp1_rep	CDS	3933643	3933878	.	+	0	Parent=Os12t0177500-01
Chr12	irgsp1_rep	CDS	3933974	3934207	.	+	1	Parent=Os12t0177500-01
Chr12	irgsp1_rep	CDS	3934641	3934779	.	+	1	Parent=Os12t0177500-01
Chr12	irgsp1_rep	CDS	3934860	3935048	.	+	0	Parent=Os12t0177500-01
Chr12	irgsp1_rep	CDS	3935130	3935202	.	+	0	Parent=Os12t0177500-01
Chr12	irgsp1_rep	CDS	3935301	3935410	.	+	2	Parent=Os12t0177500-01
Chr12	irgsp1_rep	three_prime_UTR	3935411	3935899	.	+	.	Parent=Os12t0177500-01
Chr12	irgsp1_rep	mRNA	3938882	3943933	.	+	.	ID=Os12t0177800-01;Name=Os12t0177800-01;Locus_id=Os12g0177800;Note=Similar to D-mannose binding lectin family protein%2C expressed.;Transcript_evidence=AK105397 (DDBJ%2C Best hit);ORF_evidence=Q2QWY4 (UniProt);GO=Biological Process: recognition of pollen (GO:0048544),Molecular Function: sugar binding (GO:0005529);InterPro=S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),PAN-2 domain (IPR013227);NIAS_FLcDNA=001-123-C03;TENOR=Os12t0177800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	3938882	3938905	.	+	.	Parent=Os12t0177800-01
Chr12	irgsp1_rep	five_prime_UTR	3940497	3940712	.	+	.	Parent=Os12t0177800-01
Chr12	irgsp1_rep	CDS	3940713	3940740	.	+	0	Parent=Os12t0177800-01
Chr12	irgsp1_rep	CDS	3941441	3942897	.	+	2	Parent=Os12t0177800-01
Chr12	irgsp1_rep	CDS	3943172	3943231	.	+	0	Parent=Os12t0177800-01
Chr12	irgsp1_rep	three_prime_UTR	3943232	3943933	.	+	.	Parent=Os12t0177800-01
Chr12	irgsp1_rep	mRNA	3947161	3947412	.	+	.	ID=Os12t0177900-00;Name=Os12t0177900-00;Locus_id=Os12g0177900;CGSNL Gene Symbol=ALDH3H1;CGSNL Gene Name=ALDEHYDE DEHYDROGENASE 3H1;Oryzabase Gene Symbol Synonym(s)=OsALDH3H1;Oryzabase Gene Name Synonym(s)=Aldehyde dehydrogenase 3H1;Note=Similar to Aldehyde dehydrogenase.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QWY3 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Aldehyde dehydrogenase%2C N-terminal (IPR016162);Oryzabase=22113;TENOR=Os12t0177900-00;KEGG=Os12t0177900-00
Chr12	irgsp1_rep	CDS	3947161	3947412	.	+	0	Parent=Os12t0177900-00
Chr12	irgsp1_rep	mRNA	3952789	3955835	.	+	.	ID=Os12t0178000-01;Name=Os12t0178000-01;Locus_id=Os12g0178000;Note=Similar to Aldehyde dehydrogenase family protein%2C expressed.;Transcript_evidence=AK241698 (DDBJ%2C Best hit);ORF_evidence=Q2QWY3 (UniProt);GO=Biological Process: cellular aldehyde metabolic process (GO:0006081),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: aldehyde dehydrogenase [NAD(P)+] activity (GO:0004030),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C NAD or NADP as acceptor (GO:0016620);InterPro=Aldehyde dehydrogenase NAD(P)-dependent (IPR012394),Aldehyde dehydrogenase domain (IPR015590),Aldehyde/histidinol dehydrogenase (IPR016161),Aldehyde dehydrogenase%2C N-terminal (IPR016162),Aldehyde dehydrogenase%2C C-terminal (IPR016163);NIAS_FLcDNA=J065196B09;TENOR=Os12t0178000-01;KEGG=Os12t0178000-01 (EC:1.2.1.5)
Chr12	irgsp1_rep	five_prime_UTR	3952789	3952789	.	+	.	Parent=Os12t0178000-01
Chr12	irgsp1_rep	CDS	3952790	3953015	.	+	0	Parent=Os12t0178000-01
Chr12	irgsp1_rep	CDS	3953131	3953246	.	+	2	Parent=Os12t0178000-01
Chr12	irgsp1_rep	CDS	3954171	3954275	.	+	0	Parent=Os12t0178000-01
Chr12	irgsp1_rep	CDS	3954362	3954534	.	+	0	Parent=Os12t0178000-01
Chr12	irgsp1_rep	CDS	3954629	3954719	.	+	1	Parent=Os12t0178000-01
Chr12	irgsp1_rep	CDS	3954851	3955000	.	+	0	Parent=Os12t0178000-01
Chr12	irgsp1_rep	CDS	3955464	3955706	.	+	0	Parent=Os12t0178000-01
Chr12	irgsp1_rep	three_prime_UTR	3955707	3955835	.	+	.	Parent=Os12t0178000-01
Chr12	irgsp1_rep	mRNA	3955981	3959805	.	-	.	ID=Os12t0178100-01;Name=Os12t0178100-01;Locus_id=Os12g0178100;CGSNL Gene Symbol=APX6;CGSNL Gene Name=ASCORBATE PEROXIDASE 6;Oryzabase Gene Symbol Synonym(s)=OsAPx6%2C OsAPx06%2C OSAPX6%2C APx6;Oryzabase Gene Name Synonym(s)=ascorbate peroxidase 6;Note=Haem peroxidase family protein.;Transcript_evidence=AK061107 (DDBJ%2C Best hit),AK099201 (DDBJ%2C Best hit);ORF_evidence=Q9XPR6 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Plant ascorbate peroxidase (IPR002207),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793);NIAS_FLcDNA=006-207-B12,J023122P03;Oryzabase=8956;TENOR=Os12t0178100-01
Chr12	irgsp1_rep	five_prime_UTR	3959735	3959805	.	-	.	Parent=Os12t0178100-01
Chr12	irgsp1_rep	CDS	3959669	3959734	.	-	0	Parent=Os12t0178100-01
Chr12	irgsp1_rep	CDS	3959416	3959538	.	-	0	Parent=Os12t0178100-01
Chr12	irgsp1_rep	CDS	3958949	3959069	.	-	0	Parent=Os12t0178100-01
Chr12	irgsp1_rep	CDS	3958776	3958876	.	-	2	Parent=Os12t0178100-01
Chr12	irgsp1_rep	CDS	3958586	3958673	.	-	0	Parent=Os12t0178100-01
Chr12	irgsp1_rep	CDS	3957489	3957556	.	-	2	Parent=Os12t0178100-01
Chr12	irgsp1_rep	CDS	3957321	3957407	.	-	0	Parent=Os12t0178100-01
Chr12	irgsp1_rep	CDS	3956746	3956820	.	-	0	Parent=Os12t0178100-01
Chr12	irgsp1_rep	CDS	3956582	3956659	.	-	0	Parent=Os12t0178100-01
Chr12	irgsp1_rep	CDS	3956381	3956485	.	-	0	Parent=Os12t0178100-01
Chr12	irgsp1_rep	CDS	3956282	3956299	.	-	0	Parent=Os12t0178100-01
Chr12	irgsp1_rep	three_prime_UTR	3955981	3956281	.	-	.	Parent=Os12t0178100-01
Chr12	irgsp1_rep	mRNA	3960528	3964001	.	-	.	ID=Os12t0178200-01;Name=Os12t0178200-01;Locus_id=Os12g0178200;CGSNL Gene Symbol=APX5;CGSNL Gene Name=ASCORBATE PEROXIDASE 5;Oryzabase Gene Symbol Synonym(s)=OsAPx5%2C OsAPx05%2C OSAPX5%2C APx5;Oryzabase Gene Name Synonym(s)=ascorbate peroxidase 5;Note=Similar to Thylakoid-bound ascorbate peroxidase (EC 1.11.1.11) (Fragment).;Transcript_evidence=AK073910 (DDBJ%2C Best hit);ORF_evidence=Q01IY9 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Plant ascorbate peroxidase (IPR002207),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793);NIAS_FLcDNA=J033076I03;Oryzabase=8955;Expression=AK073910;TENOR=Os12t0178200-01;KEGG=Os12t0178200-01 (EC:1.11.1.11)
Chr12	irgsp1_rep	five_prime_UTR	3963952	3964001	.	-	.	Parent=Os12t0178200-01
Chr12	irgsp1_rep	CDS	3963862	3963951	.	-	0	Parent=Os12t0178200-01
Chr12	irgsp1_rep	CDS	3963629	3963760	.	-	0	Parent=Os12t0178200-01
Chr12	irgsp1_rep	CDS	3963205	3963325	.	-	0	Parent=Os12t0178200-01
Chr12	irgsp1_rep	CDS	3963023	3963123	.	-	2	Parent=Os12t0178200-01
Chr12	irgsp1_rep	CDS	3962836	3962923	.	-	0	Parent=Os12t0178200-01
Chr12	irgsp1_rep	CDS	3961746	3961813	.	-	2	Parent=Os12t0178200-01
Chr12	irgsp1_rep	CDS	3961572	3961658	.	-	0	Parent=Os12t0178200-01
Chr12	irgsp1_rep	CDS	3961297	3961371	.	-	0	Parent=Os12t0178200-01
Chr12	irgsp1_rep	CDS	3961140	3961217	.	-	0	Parent=Os12t0178200-01
Chr12	irgsp1_rep	CDS	3960936	3961040	.	-	0	Parent=Os12t0178200-01
Chr12	irgsp1_rep	CDS	3960825	3960842	.	-	0	Parent=Os12t0178200-01
Chr12	irgsp1_rep	three_prime_UTR	3960528	3960824	.	-	.	Parent=Os12t0178200-01
Chr12	irgsp1_rep	mRNA	3969344	3969664	.	+	.	ID=Os12t0178250-00;Name=Os12t0178250-00;Locus_id=Os12g0178250;Note=Similar to dehydration-responsive protein-related.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001031109.1 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Protein of unknown function DUF248%2C methyltransferase putative (IPR004159);TENOR=Os12t0178250-00
Chr12	irgsp1_rep	CDS	3969344	3969664	.	+	0	Parent=Os12t0178250-00
Chr12	irgsp1_rep	mRNA	3969697	3971102	.	+	.	ID=Os12t0178300-00;Name=Os12t0178300-00;Locus_id=Os12g0178300;Note=Similar to ankyrin-like protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001151565.1 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Protein of unknown function DUF248%2C methyltransferase putative (IPR004159);TENOR=Os12t0178300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	3969697	3970070	.	+	0	Parent=Os12t0178300-00
Chr12	irgsp1_rep	CDS	3970507	3970701	.	+	1	Parent=Os12t0178300-00
Chr12	irgsp1_rep	CDS	3970874	3971102	.	+	1	Parent=Os12t0178300-00
Chr12	irgsp1_rep	mRNA	3977180	3977932	.	+	.	ID=Os12t0178500-00;Name=Os12t0178500-00;Locus_id=Os12g0178500;CGSNL Gene Symbol=SWEET7C;CGSNL Gene Name=SWEET7C;Oryzabase Gene Symbol Synonym(s)=OsSWEET7c%2C SWEET7c;Note=Similar to seven-transmembrane-domain protein 1.;Transcript_evidence=FP100089 (DDBJ);ORF_evidence=Q2QWX8 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=RAG1-activating protein-1-related (IPR004316);Oryzabase=9100;TENOR=Os12t0178500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	3977180	3977302	.	+	.	Parent=Os12t0178500-00
Chr12	irgsp1_rep	CDS	3977303	3977932	.	+	0	Parent=Os12t0178500-00
Chr12	irgsp1_rep	mRNA	3980849	3981227	.	+	.	ID=Os12t0178600-00;Name=Os12t0178600-00;Locus_id=Os12g0178600;Note=Similar to dehydration-responsive protein-related.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_190676.1 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168);InterPro=Protein of unknown function DUF248%2C methyltransferase putative (IPR004159);TENOR=Os12t0178600-00
Chr12	irgsp1_rep	CDS	3980849	3981072	.	+	0	Parent=Os12t0178600-00
Chr12	irgsp1_rep	CDS	3981173	3981227	.	+	1	Parent=Os12t0178600-00
Chr12	irgsp1_rep	mRNA	3983199	3986634	.	-	.	ID=Os12t0178633-00;Name=Os12t0178633-00;Locus_id=Os12g0178633;Oryzabase Gene Symbol Synonym(s)=OsWD40-196%2C OsSTA276;Note=WD40 repeat domain containing protein.;Transcript_evidence=AK369075 (DDBJ);ORF_evidence=B8BNG0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);Oryzabase=10877;TENOR=Os12t0178633-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	3985982	3986634	.	-	.	Parent=Os12t0178633-00
Chr12	irgsp1_rep	CDS	3984739	3985981	.	-	0	Parent=Os12t0178633-00
Chr12	irgsp1_rep	CDS	3984480	3984637	.	-	2	Parent=Os12t0178633-00
Chr12	irgsp1_rep	CDS	3984233	3984284	.	-	0	Parent=Os12t0178633-00
Chr12	irgsp1_rep	CDS	3984040	3984122	.	-	2	Parent=Os12t0178633-00
Chr12	irgsp1_rep	CDS	3983841	3983934	.	-	0	Parent=Os12t0178633-00
Chr12	irgsp1_rep	CDS	3983199	3983746	.	-	2	Parent=Os12t0178633-00
Chr12	irgsp1_rep	mRNA	3986839	3994495	.	-	.	ID=Os12t0178700-01;Name=Os12t0178700-01;Locus_id=Os12g0178700;Oryzabase Gene Symbol Synonym(s)=ARC5%2C OsARC5%2C Os ARC5;Oryzabase Gene Name Synonym(s)=ACCUMULATION AND REPLICATION OF CHLOROPLASTS5;Note=Similar to ARC5 (ACCUMULATION AND REPLICATION OF CHLOROPLAST 5)%3B GTP binding / GTPase.;Transcript_evidence=AK072318 (DDBJ%2C Best hit);ORF_evidence=NP_188606.2 (RefSeq);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Dynamin%2C GTPase domain (IPR001401),Dynamin (IPR022812);NIAS_FLcDNA=J023029A13;Oryzabase=9292;TENOR=Os12t0178700-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	3994444	3994495	.	-	.	Parent=Os12t0178700-01
Chr12	irgsp1_rep	CDS	3994057	3994443	.	-	0	Parent=Os12t0178700-01
Chr12	irgsp1_rep	CDS	3993096	3993260	.	-	0	Parent=Os12t0178700-01
Chr12	irgsp1_rep	CDS	3992808	3992930	.	-	0	Parent=Os12t0178700-01
Chr12	irgsp1_rep	CDS	3992357	3992578	.	-	0	Parent=Os12t0178700-01
Chr12	irgsp1_rep	CDS	3991403	3991536	.	-	0	Parent=Os12t0178700-01
Chr12	irgsp1_rep	CDS	3991218	3991310	.	-	1	Parent=Os12t0178700-01
Chr12	irgsp1_rep	CDS	3990115	3990178	.	-	1	Parent=Os12t0178700-01
Chr12	irgsp1_rep	CDS	3989890	3989938	.	-	0	Parent=Os12t0178700-01
Chr12	irgsp1_rep	CDS	3989698	3989780	.	-	2	Parent=Os12t0178700-01
Chr12	irgsp1_rep	CDS	3989213	3989370	.	-	0	Parent=Os12t0178700-01
Chr12	irgsp1_rep	CDS	3989073	3989133	.	-	1	Parent=Os12t0178700-01
Chr12	irgsp1_rep	CDS	3988654	3988716	.	-	0	Parent=Os12t0178700-01
Chr12	irgsp1_rep	CDS	3988495	3988572	.	-	0	Parent=Os12t0178700-01
Chr12	irgsp1_rep	three_prime_UTR	3988468	3988494	.	-	.	Parent=Os12t0178700-01
Chr12	irgsp1_rep	three_prime_UTR	3987825	3987882	.	-	.	Parent=Os12t0178700-01
Chr12	irgsp1_rep	three_prime_UTR	3987413	3987745	.	-	.	Parent=Os12t0178700-01
Chr12	irgsp1_rep	three_prime_UTR	3987165	3987329	.	-	.	Parent=Os12t0178700-01
Chr12	irgsp1_rep	three_prime_UTR	3986839	3987082	.	-	.	Parent=Os12t0178700-01
Chr12	irgsp1_rep	mRNA	3999978	4000795	.	-	.	ID=Os12t0178800-01;Name=Os12t0178800-01;Locus_id=Os12g0178800;Note=Hypothetical protein.;Transcript_evidence=AK063709 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-120-B09;Expression=AK063709;TENOR=Os12t0178800-01;KEGG=Os12t0178800-01
Chr12	irgsp1_rep	five_prime_UTR	4000624	4000795	.	-	.	Parent=Os12t0178800-01
Chr12	irgsp1_rep	CDS	4000135	4000623	.	-	0	Parent=Os12t0178800-01
Chr12	irgsp1_rep	three_prime_UTR	3999978	4000134	.	-	.	Parent=Os12t0178800-01
Chr12	irgsp1_rep	mRNA	4011107	4011818	.	-	.	ID=Os12t0179100-01;Name=Os12t0179100-01;Locus_id=Os12g0179100;Note=Hypothetical gene.;Transcript_evidence=AK106975 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-119-H01;Expression=AK106975;TENOR=Os12t0179100-01;KEGG=Os12t0179100-01
Chr12	irgsp1_rep	five_prime_UTR	4011549	4011818	.	-	.	Parent=Os12t0179100-01
Chr12	irgsp1_rep	CDS	4011321	4011548	.	-	0	Parent=Os12t0179100-01
Chr12	irgsp1_rep	three_prime_UTR	4011107	4011320	.	-	.	Parent=Os12t0179100-01
Chr12	irgsp1_rep	mRNA	4028028	4030670	.	+	.	ID=Os12t0179700-01;Name=Os12t0179700-01;Locus_id=Os12g0179700;Note=Hypothetical conserved gene.;Transcript_evidence=AK068305 (DDBJ%2C Best hit);ORF_evidence=Q2QWX0 (UniProt);NIAS_FLcDNA=J013146K12;Expression=AK068305;TENOR=Os12t0179700-01;KEGG=Os12t0179700-01
Chr12	irgsp1_rep	five_prime_UTR	4028028	4028105	.	+	.	Parent=Os12t0179700-01
Chr12	irgsp1_rep	CDS	4028106	4028559	.	+	0	Parent=Os12t0179700-01
Chr12	irgsp1_rep	CDS	4028651	4028670	.	+	2	Parent=Os12t0179700-01
Chr12	irgsp1_rep	three_prime_UTR	4028671	4029525	.	+	.	Parent=Os12t0179700-01
Chr12	irgsp1_rep	three_prime_UTR	4030195	4030670	.	+	.	Parent=Os12t0179700-01
Chr12	irgsp1_rep	mRNA	4028039	4031568	.	+	.	ID=Os12t0179700-02;Name=Os12t0179700-02;Locus_id=Os12g0179700;Note=Domain of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK073945 (DDBJ%2C Best hit),AK120612 (DDBJ%2C Best hit);ORF_evidence=Q2QWX0 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=J033073N02,J013151J15;TENOR=Os12t0179700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	4028039	4028105	.	+	.	Parent=Os12t0179700-02
Chr12	irgsp1_rep	CDS	4028106	4029515	.	+	0	Parent=Os12t0179700-02
Chr12	irgsp1_rep	three_prime_UTR	4029516	4029525	.	+	.	Parent=Os12t0179700-02
Chr12	irgsp1_rep	three_prime_UTR	4030195	4031568	.	+	.	Parent=Os12t0179700-02
Chr12	irgsp1_rep	mRNA	4032214	4036962	.	-	.	ID=Os12t0179800-01;Name=Os12t0179800-01;Locus_id=Os12g0179800;Oryzabase Gene Symbol Synonym(s)=Sir2%2C OsSIR2b%2C OsSir2b%2C OsSRT2%2C SRT2%2C DLN255%2C OsDLN255;Oryzabase Gene Name Synonym(s)=DLN repressor 255%2C DLN motif protein 255;Note=NAD-dependent histone deacetylase%2C silent information regulator Sir2 domain containing protein.;Transcript_evidence=AK067069 (DDBJ%2C Best hit);ORF_evidence=XP_002306275.1 (RefSeq);GO=Biological Process: protein deacetylation (GO:0006476),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: NAD+ binding (GO:0070403);InterPro=NAD-dependent deacetylase%2C sirtuin family (IPR003000);NIAS_FLcDNA=J013093I24;Oryzabase=11235;Expression=AK067069;TENOR=Os12t0179800-01;KEGG=Os12t0179800-01
Chr12	irgsp1_rep	five_prime_UTR	4036843	4036962	.	-	.	Parent=Os12t0179800-01
Chr12	irgsp1_rep	CDS	4036804	4036842	.	-	0	Parent=Os12t0179800-01
Chr12	irgsp1_rep	CDS	4035908	4035951	.	-	0	Parent=Os12t0179800-01
Chr12	irgsp1_rep	CDS	4035572	4035820	.	-	1	Parent=Os12t0179800-01
Chr12	irgsp1_rep	CDS	4035422	4035487	.	-	1	Parent=Os12t0179800-01
Chr12	irgsp1_rep	CDS	4035299	4035344	.	-	1	Parent=Os12t0179800-01
Chr12	irgsp1_rep	CDS	4034245	4034405	.	-	0	Parent=Os12t0179800-01
Chr12	irgsp1_rep	CDS	4034026	4034155	.	-	1	Parent=Os12t0179800-01
Chr12	irgsp1_rep	CDS	4033541	4033705	.	-	0	Parent=Os12t0179800-01
Chr12	irgsp1_rep	CDS	4033006	4033133	.	-	0	Parent=Os12t0179800-01
Chr12	irgsp1_rep	CDS	4032793	4032892	.	-	1	Parent=Os12t0179800-01
Chr12	irgsp1_rep	CDS	4032649	4032702	.	-	0	Parent=Os12t0179800-01
Chr12	irgsp1_rep	three_prime_UTR	4032214	4032648	.	-	.	Parent=Os12t0179800-01
Chr12	irgsp1_rep	mRNA	4043668	4044183	.	+	.	ID=Os12t0179951-00;Name=Os12t0179951-00;Locus_id=Os12g0179951;Note=Non-protein coding transcript.;Transcript_evidence=CT837817 (DDBJ%2C Secondary hit);ORF_evidence=NONE;TENOR=Os12t0179951-00
Chr12	irgsp1_rep	exon	4043668	4044183	.	+	.	Parent=Os12t0179951-00
Chr12	irgsp1_rep	mRNA	4044478	4047374	.	+	.	ID=Os12t0180100-01;Name=Os12t0180100-01;Locus_id=Os12g0180100;CGSNL Gene Symbol=PT26;CGSNL Gene Name=PHOSPHATE TRANSPORTER 26;Oryzabase Gene Symbol Synonym(s)=OsPT26;Oryzabase Gene Name Synonym(s)=phosphate transporter 26;Note=Major facilitator superfamily protein.;Transcript_evidence=AK071259 (DDBJ%2C Best hit);ORF_evidence=NP_001148973.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J023084F19;Oryzabase=21408;Expression=AK071259;TENOR=Os12t0180100-01;KEGG=Os12t0180100-01
Chr12	irgsp1_rep	five_prime_UTR	4044478	4044660	.	+	.	Parent=Os12t0180100-01
Chr12	irgsp1_rep	five_prime_UTR	4045646	4045779	.	+	.	Parent=Os12t0180100-01
Chr12	irgsp1_rep	CDS	4045780	4047099	.	+	0	Parent=Os12t0180100-01
Chr12	irgsp1_rep	three_prime_UTR	4047100	4047374	.	+	.	Parent=Os12t0180100-01
Chr12	irgsp1_rep	mRNA	4046049	4047369	.	+	.	ID=Os12t0180100-02;Name=Os12t0180100-02;Locus_id=Os12g0180100;CGSNL Gene Symbol=PT26;CGSNL Gene Name=PHOSPHATE TRANSPORTER 26;Oryzabase Gene Symbol Synonym(s)=OsPT26;Oryzabase Gene Name Synonym(s)=phosphate transporter 26;Note=Similar to inorganic phosphate cotransporter.;Transcript_evidence=AK058227 (DDBJ%2C Best hit);ORF_evidence=NP_001148973.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=001-010-H11;Oryzabase=21408;Expression=AK058227;TENOR=Os12t0180100-02;KEGG=Os12t0180100-02
Chr12	irgsp1_rep	five_prime_UTR	4046049	4046049	.	+	.	Parent=Os12t0180100-02
Chr12	irgsp1_rep	CDS	4046050	4047099	.	+	0	Parent=Os12t0180100-02
Chr12	irgsp1_rep	three_prime_UTR	4047100	4047369	.	+	.	Parent=Os12t0180100-02
Chr12	irgsp1_rep	mRNA	4045644	4047270	.	-	.	ID=Os12t0180250-00;Name=Os12t0180250-00;Locus_id=Os12g0180250;Note=Hypothetical protein.;Transcript_evidence=tplb0057d09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0180250-00
Chr12	irgsp1_rep	five_prime_UTR	4046402	4047270	.	-	.	Parent=Os12t0180250-00
Chr12	irgsp1_rep	CDS	4046135	4046401	.	-	0	Parent=Os12t0180250-00
Chr12	irgsp1_rep	three_prime_UTR	4045644	4046134	.	-	.	Parent=Os12t0180250-00
Chr12	irgsp1_rep	mRNA	4051769	4054373	.	+	.	ID=Os12t0180400-01;Name=Os12t0180400-01;Locus_id=Os12g0180400;Note=Similar to DNA-directed RNA polymerase II 8.2 kDa polypeptide.;Transcript_evidence=AK062318 (DDBJ%2C Best hit),AK103639 (DDBJ%2C Best hit);ORF_evidence=NP_001148175.1 (RefSeq);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899),Molecular Function: zinc ion binding (GO:0008270);InterPro=RNA polymerase%2C subunit N/RPB10 (IPR000268),Homeodomain-related (IPR012287),RNA polymerases%2C subunit N%2C zinc binding site (IPR020789),RNA polymerase subunit RPB10 (IPR023580);NIAS_FLcDNA=001-101-C06,J033134F19;TENOR=Os12t0180400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	4051769	4051769	.	+	.	Parent=Os12t0180400-01
Chr12	irgsp1_rep	CDS	4051770	4051898	.	+	0	Parent=Os12t0180400-01
Chr12	irgsp1_rep	CDS	4052299	4052357	.	+	0	Parent=Os12t0180400-01
Chr12	irgsp1_rep	CDS	4053936	4054030	.	+	1	Parent=Os12t0180400-01
Chr12	irgsp1_rep	CDS	4054108	4054136	.	+	2	Parent=Os12t0180400-01
Chr12	irgsp1_rep	three_prime_UTR	4054137	4054373	.	+	.	Parent=Os12t0180400-01
Chr12	irgsp1_rep	mRNA	4056054	4058982	.	-	.	ID=Os12t0180500-00;Name=Os12t0180500-00;Locus_id=Os12g0180500;CGSNL Gene Symbol=RLCK361;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 361;Oryzabase Gene Symbol Synonym(s)=OsRLCK361;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 361;Note=Similar to Protein kinase domain containing protein.;Transcript_evidence=AK366399 (DDBJ);ORF_evidence=Q2QWW5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: response to stress (GO:0006950),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),UspA (IPR006016),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=19031;TENOR=Os12t0180500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	4058662	4058982	.	-	0	Parent=Os12t0180500-00
Chr12	irgsp1_rep	CDS	4058302	4058581	.	-	0	Parent=Os12t0180500-00
Chr12	irgsp1_rep	CDS	4057637	4058146	.	-	2	Parent=Os12t0180500-00
Chr12	irgsp1_rep	CDS	4057257	4057517	.	-	2	Parent=Os12t0180500-00
Chr12	irgsp1_rep	CDS	4056988	4057157	.	-	2	Parent=Os12t0180500-00
Chr12	irgsp1_rep	CDS	4056812	4056891	.	-	0	Parent=Os12t0180500-00
Chr12	irgsp1_rep	CDS	4056417	4056720	.	-	1	Parent=Os12t0180500-00
Chr12	irgsp1_rep	CDS	4056067	4056330	.	-	0	Parent=Os12t0180500-00
Chr12	irgsp1_rep	three_prime_UTR	4056054	4056066	.	-	.	Parent=Os12t0180500-00
Chr12	irgsp1_rep	mRNA	4061071	4069240	.	+	.	ID=Os12t0180600-00;Name=Os12t0180600-00;Locus_id=Os12g0180600;Note=Similar to HAD superfamily hydrolase%2C 5'-Nucleotidase containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=B9GC65 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=HAD-superfamily hydrolase%2C subfamily IG%2C 5'-nucleotidase (IPR008380),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),HAD-like domain (IPR023214);TENOR=Os12t0180600-00;KEGG=Os12t0180600-00 (EC:3.1.3.5)
Chr12	irgsp1_rep	CDS	4061071	4061358	.	+	0	Parent=Os12t0180600-00
Chr12	irgsp1_rep	CDS	4061463	4061717	.	+	0	Parent=Os12t0180600-00
Chr12	irgsp1_rep	CDS	4061794	4061858	.	+	0	Parent=Os12t0180600-00
Chr12	irgsp1_rep	CDS	4061939	4062016	.	+	1	Parent=Os12t0180600-00
Chr12	irgsp1_rep	CDS	4062433	4062568	.	+	1	Parent=Os12t0180600-00
Chr12	irgsp1_rep	CDS	4062654	4062746	.	+	0	Parent=Os12t0180600-00
Chr12	irgsp1_rep	CDS	4062831	4062976	.	+	0	Parent=Os12t0180600-00
Chr12	irgsp1_rep	CDS	4063067	4063167	.	+	1	Parent=Os12t0180600-00
Chr12	irgsp1_rep	CDS	4063252	4063427	.	+	2	Parent=Os12t0180600-00
Chr12	irgsp1_rep	CDS	4064816	4064893	.	+	0	Parent=Os12t0180600-00
Chr12	irgsp1_rep	CDS	4064984	4065192	.	+	0	Parent=Os12t0180600-00
Chr12	irgsp1_rep	CDS	4065881	4065964	.	+	1	Parent=Os12t0180600-00
Chr12	irgsp1_rep	CDS	4066584	4066671	.	+	1	Parent=Os12t0180600-00
Chr12	irgsp1_rep	CDS	4066749	4066802	.	+	0	Parent=Os12t0180600-00
Chr12	irgsp1_rep	CDS	4067963	4068019	.	+	0	Parent=Os12t0180600-00
Chr12	irgsp1_rep	CDS	4069166	4069240	.	+	0	Parent=Os12t0180600-00
Chr12	irgsp1_rep	mRNA	4074810	4080282	.	-	.	ID=Os12t0180800-00;Name=Os12t0180800-00;Locus_id=Os12g0180800;Oryzabase Gene Symbol Synonym(s)=OsbHLH179%2C bHLH179;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 179;Note=Similar to OSIGBa0158F05.9 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01KG1 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);Oryzabase=22850;TENOR=Os12t0180800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	4080110	4080282	.	-	0	Parent=Os12t0180800-00
Chr12	irgsp1_rep	CDS	4079922	4080000	.	-	1	Parent=Os12t0180800-00
Chr12	irgsp1_rep	CDS	4079808	4079858	.	-	0	Parent=Os12t0180800-00
Chr12	irgsp1_rep	CDS	4079581	4079652	.	-	0	Parent=Os12t0180800-00
Chr12	irgsp1_rep	CDS	4079412	4079472	.	-	0	Parent=Os12t0180800-00
Chr12	irgsp1_rep	CDS	4075461	4075553	.	-	2	Parent=Os12t0180800-00
Chr12	irgsp1_rep	CDS	4074810	4074895	.	-	2	Parent=Os12t0180800-00
Chr12	irgsp1_rep	mRNA	4082386	4085396	.	+	.	ID=Os12t0180900-01;Name=Os12t0180900-01;Locus_id=Os12g0180900;Note=Conserved hypothetical protein.;Transcript_evidence=AK110994 (DDBJ%2C Best hit);ORF_evidence=Q2QWW1 (UniProt);NIAS_FLcDNA=002-174-E02;TENOR=Os12t0180900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	4082386	4082386	.	+	.	Parent=Os12t0180900-01
Chr12	irgsp1_rep	CDS	4082387	4082615	.	+	0	Parent=Os12t0180900-01
Chr12	irgsp1_rep	CDS	4082718	4082860	.	+	2	Parent=Os12t0180900-01
Chr12	irgsp1_rep	CDS	4083054	4083356	.	+	0	Parent=Os12t0180900-01
Chr12	irgsp1_rep	three_prime_UTR	4083357	4083511	.	+	.	Parent=Os12t0180900-01
Chr12	irgsp1_rep	three_prime_UTR	4083609	4083855	.	+	.	Parent=Os12t0180900-01
Chr12	irgsp1_rep	three_prime_UTR	4083952	4084092	.	+	.	Parent=Os12t0180900-01
Chr12	irgsp1_rep	three_prime_UTR	4084359	4084433	.	+	.	Parent=Os12t0180900-01
Chr12	irgsp1_rep	three_prime_UTR	4084875	4085396	.	+	.	Parent=Os12t0180900-01
Chr12	irgsp1_rep	mRNA	4091707	4097797	.	-	.	ID=Os12t0181200-00;Name=Os12t0181200-00;Locus_id=Os12g0181200;CGSNL Gene Symbol=RLCK362;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 362;Oryzabase Gene Symbol Synonym(s)=OsRLCK362;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 362;Note=Similar to Protein kinase domain containing protein.;Transcript_evidence=AK366399 (DDBJ);ORF_evidence=Q2QWW5 (UniProt);GO=Biological Process: response to stress (GO:0006950);InterPro=UspA (IPR006016),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);Oryzabase=19032;TENOR=Os12t0181200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	4097640	4097797	.	-	.	Parent=Os12t0181200-00
Chr12	irgsp1_rep	CDS	4097322	4097639	.	-	0	Parent=Os12t0181200-00
Chr12	irgsp1_rep	CDS	4096959	4097229	.	-	0	Parent=Os12t0181200-00
Chr12	irgsp1_rep	CDS	4096281	4096803	.	-	2	Parent=Os12t0181200-00
Chr12	irgsp1_rep	CDS	4093104	4093167	.	-	1	Parent=Os12t0181200-00
Chr12	irgsp1_rep	three_prime_UTR	4092918	4093103	.	-	.	Parent=Os12t0181200-00
Chr12	irgsp1_rep	three_prime_UTR	4092642	4092811	.	-	.	Parent=Os12t0181200-00
Chr12	irgsp1_rep	three_prime_UTR	4092470	4092549	.	-	.	Parent=Os12t0181200-00
Chr12	irgsp1_rep	three_prime_UTR	4092067	4092371	.	-	.	Parent=Os12t0181200-00
Chr12	irgsp1_rep	three_prime_UTR	4091707	4091983	.	-	.	Parent=Os12t0181200-00
Chr12	irgsp1_rep	mRNA	4103244	4104420	.	-	.	ID=Os12t0181300-00;Name=Os12t0181300-00;Locus_id=Os12g0181300;Note=Similar to TRAF-type zinc finger family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QWV7 (UniProt);GO=Biological Process: protein ubiquitination (GO:0016567),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C TRAF-type (IPR001293),TRAF-like (IPR008974),Seven In Absentia Homolog-type (IPR013323);TENOR=Os12t0181300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	4103515	4104420	.	-	0	Parent=Os12t0181300-00
Chr12	irgsp1_rep	CDS	4103244	4103345	.	-	0	Parent=Os12t0181300-00
Chr12	irgsp1_rep	mRNA	4120926	4122836	.	+	.	ID=Os12t0181500-01;Name=Os12t0181500-01;Locus_id=Os12g0181500;RAP-DB Gene Symbol Synonym(s)=OsAAP11A%2C AAP11A%2C OsAAP16%2C AAP16;RAP-DB Gene Name Synonym(s)=amino acid permease 11A%2C amino acid permease 16%2C amino acid/auxin permease 16;CGSNL Gene Symbol=AAP11A;CGSNL Gene Name=AMINO ACID PERMEASE 11A;Oryzabase Gene Symbol Synonym(s)=OsAAP11A%2C OsAAP16%2C AAP16;Oryzabase Gene Name Synonym(s)=amino acid permease 11A%2C amino acid permease 16%2C amino acid/auxin permease 16;Note=Amino acid permease%2C Transport of amino acids;Transcript_evidence=AK061448,AK099164,AK106090;ORF_evidence=Q2QWV5;InterPro=Amino acid transporter%2C transmembrane domain (IPR013057);NIAS_FLcDNA=006-307-E03, J023073O03, 001-207-B07;Manual Curation=September 3%2C 2015;Literature_PMID=25907566,23166615;Oryzabase=18500;Expression=AK099164;TENOR=Os12t0181500-01;KEGG=Os12t0181500-01
Chr12	irgsp1_rep	five_prime_UTR	4120926	4121022	.	+	.	Parent=Os12t0181500-01
Chr12	irgsp1_rep	CDS	4121023	4121671	.	+	0	Parent=Os12t0181500-01
Chr12	irgsp1_rep	CDS	4121776	4121918	.	+	2	Parent=Os12t0181500-01
Chr12	irgsp1_rep	CDS	4122018	4122653	.	+	0	Parent=Os12t0181500-01
Chr12	irgsp1_rep	three_prime_UTR	4122654	4122836	.	+	.	Parent=Os12t0181500-01
Chr12	irgsp1_rep	mRNA	4121027	4123125	.	-	.	ID=Os12t0181533-00;Name=Os12t0181533-00;Locus_id=Os12g0181533;Note=Hypothetical protein.;Transcript_evidence=tplb0036o08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0181533-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	4122868	4123125	.	-	.	Parent=Os12t0181533-00
Chr12	irgsp1_rep	five_prime_UTR	4122018	4122701	.	-	.	Parent=Os12t0181533-00
Chr12	irgsp1_rep	five_prime_UTR	4121774	4121918	.	-	.	Parent=Os12t0181533-00
Chr12	irgsp1_rep	five_prime_UTR	4121497	4121669	.	-	.	Parent=Os12t0181533-00
Chr12	irgsp1_rep	CDS	4121027	4121496	.	-	0	Parent=Os12t0181533-00
Chr12	irgsp1_rep	mRNA	4144620	4146619	.	-	.	ID=Os12t0181600-01;Name=Os12t0181600-01;Locus_id=Os12g0181600;CGSNL Gene Symbol=AAP11B;CGSNL Gene Name=AMINO ACID PERMEASE 11B;Oryzabase Gene Symbol Synonym(s)=OsAAP11B%2C OsAAP15%2C AAP15;Oryzabase Gene Name Synonym(s)=amino acid permease 11B%2C amino acid permease 15%2C amino acid/auxin permease 15;Note=Amino acid transporter%2C transmembrane domain containing protein.;Transcript_evidence=AK061470 (DDBJ%2C Best hit),AK061444 (DDBJ%2C Best hit),AK105784 (DDBJ%2C Best hit);ORF_evidence=NP_001149036.1 (RefSeq);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=006-308-D07,006-307-C11,001-202-G09;Oryzabase=18499;Expression=AK061470;TENOR=Os12t0181600-01;KEGG=Os12t0181600-01
Chr12	irgsp1_rep	five_prime_UTR	4146545	4146619	.	-	.	Parent=Os12t0181600-01
Chr12	irgsp1_rep	CDS	4145896	4146544	.	-	0	Parent=Os12t0181600-01
Chr12	irgsp1_rep	CDS	4145649	4145791	.	-	2	Parent=Os12t0181600-01
Chr12	irgsp1_rep	CDS	4144914	4145549	.	-	0	Parent=Os12t0181600-01
Chr12	irgsp1_rep	three_prime_UTR	4144620	4144913	.	-	.	Parent=Os12t0181600-01
Chr12	irgsp1_rep	mRNA	4144912	4146540	.	+	.	ID=Os12t0181701-00;Name=Os12t0181701-00;Locus_id=Os12g0181701;Note=Hypothetical protein.;Transcript_evidence=tplb0036o08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0181701-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	4144912	4145544	.	+	.	Parent=Os12t0181701-00
Chr12	irgsp1_rep	five_prime_UTR	4145639	4145791	.	+	.	Parent=Os12t0181701-00
Chr12	irgsp1_rep	five_prime_UTR	4145896	4146070	.	+	.	Parent=Os12t0181701-00
Chr12	irgsp1_rep	CDS	4146071	4146540	.	+	0	Parent=Os12t0181701-00
Chr12	irgsp1_rep	mRNA	4163635	4167904	.	+	.	ID=Os12t0181900-01;Name=Os12t0181900-01;Locus_id=Os12g0181900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK120742 (DDBJ%2C Best hit);ORF_evidence=D2STE6 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J023004A10;Expression=AK120742;TENOR=Os12t0181900-01;KEGG=Os12t0181900-01
Chr12	irgsp1_rep	five_prime_UTR	4163635	4163665	.	+	.	Parent=Os12t0181900-01
Chr12	irgsp1_rep	CDS	4163666	4165420	.	+	0	Parent=Os12t0181900-01
Chr12	irgsp1_rep	three_prime_UTR	4165421	4167370	.	+	.	Parent=Os12t0181900-01
Chr12	irgsp1_rep	three_prime_UTR	4167481	4167904	.	+	.	Parent=Os12t0181900-01
Chr12	irgsp1_rep	mRNA	4168860	4169448	.	-	.	ID=Os12t0182000-00;Name=Os12t0182000-00;Locus_id=Os12g0182000;Note=Conserved hypothetical protein.;Transcript_evidence=AK373543 (DDBJ);ORF_evidence=Q2QWU9 (UniProt);TENOR=Os12t0182000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	4169439	4169448	.	-	.	Parent=Os12t0182000-00
Chr12	irgsp1_rep	CDS	4168860	4169438	.	-	0	Parent=Os12t0182000-00
Chr12	irgsp1_rep	mRNA	4170330	4171500	.	-	.	ID=Os12t0182100-00;Name=Os12t0182100-00;Locus_id=Os12g0182100;Note=Hypothetical conserved gene.;Transcript_evidence=AK248601 (DDBJ);ORF_evidence=Q2QWU8 (UniProt);TENOR=Os12t0182100-00;KEGG=Os12t0182100-00
Chr12	irgsp1_rep	CDS	4170640	4171500	.	-	0	Parent=Os12t0182100-00
Chr12	irgsp1_rep	CDS	4170429	4170557	.	-	0	Parent=Os12t0182100-00
Chr12	irgsp1_rep	three_prime_UTR	4170330	4170428	.	-	.	Parent=Os12t0182100-00
Chr12	irgsp1_rep	mRNA	4171993	4176907	.	-	.	ID=Os12t0182200-01;Name=Os12t0182200-01;Locus_id=Os12g0182200;Note=Similar to Dihydrolipoamide S-acetyltransferase.;Transcript_evidence=AK099737 (DDBJ%2C Best hit);ORF_evidence=B4G1C9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Biotin/lipoyl attachment (IPR000089),2-oxoacid dehydrogenase acyltransferase%2C catalytic domain (IPR001078),2-oxo acid dehydrogenase%2C lipoyl-binding site (IPR003016),E3 binding (IPR004167),Single hybrid motif (IPR011053),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J013090I09;TENOR=Os12t0182200-01
Chr12	irgsp1_rep	five_prime_UTR	4176796	4176907	.	-	.	Parent=Os12t0182200-01
Chr12	irgsp1_rep	CDS	4175932	4176795	.	-	0	Parent=Os12t0182200-01
Chr12	irgsp1_rep	CDS	4175652	4175843	.	-	0	Parent=Os12t0182200-01
Chr12	irgsp1_rep	CDS	4175475	4175562	.	-	0	Parent=Os12t0182200-01
Chr12	irgsp1_rep	CDS	4172681	4172751	.	-	2	Parent=Os12t0182200-01
Chr12	irgsp1_rep	CDS	4172507	4172590	.	-	0	Parent=Os12t0182200-01
Chr12	irgsp1_rep	CDS	4172306	4172410	.	-	0	Parent=Os12t0182200-01
Chr12	irgsp1_rep	three_prime_UTR	4171993	4172305	.	-	.	Parent=Os12t0182200-01
Chr12	irgsp1_rep	mRNA	4171997	4175972	.	-	.	ID=Os12t0182200-02;Name=Os12t0182200-02;Locus_id=Os12g0182200;Note=Similar to Dihydrolipoyllysine-residue acetyltransferase component of pyruvatedehydrogenase complex.;Transcript_evidence=AK069414 (DDBJ%2C Best hit);ORF_evidence=B4G1C9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=2-oxoacid dehydrogenase acyltransferase%2C catalytic domain (IPR001078),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J023018G17;TENOR=Os12t0182200-02
Chr12	irgsp1_rep	five_prime_UTR	4175971	4175972	.	-	.	Parent=Os12t0182200-02
Chr12	irgsp1_rep	CDS	4175932	4175970	.	-	0	Parent=Os12t0182200-02
Chr12	irgsp1_rep	CDS	4175652	4175843	.	-	0	Parent=Os12t0182200-02
Chr12	irgsp1_rep	CDS	4175475	4175562	.	-	0	Parent=Os12t0182200-02
Chr12	irgsp1_rep	CDS	4172681	4172751	.	-	2	Parent=Os12t0182200-02
Chr12	irgsp1_rep	CDS	4172507	4172590	.	-	0	Parent=Os12t0182200-02
Chr12	irgsp1_rep	CDS	4172306	4172410	.	-	0	Parent=Os12t0182200-02
Chr12	irgsp1_rep	three_prime_UTR	4171997	4172305	.	-	.	Parent=Os12t0182200-02
Chr12	irgsp1_rep	mRNA	4178415	4182634	.	-	.	ID=Os12t0182300-01;Name=Os12t0182300-01;Locus_id=Os12g0182300;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK067635 (DDBJ%2C Best hit);ORF_evidence=A3CFJ6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J013110A16;Expression=AK067635;TENOR=Os12t0182300-01;KEGG=Os12t0182300-01
Chr12	irgsp1_rep	five_prime_UTR	4182456	4182634	.	-	.	Parent=Os12t0182300-01
Chr12	irgsp1_rep	CDS	4179842	4182455	.	-	0	Parent=Os12t0182300-01
Chr12	irgsp1_rep	CDS	4178921	4179228	.	-	2	Parent=Os12t0182300-01
Chr12	irgsp1_rep	three_prime_UTR	4178415	4178920	.	-	.	Parent=Os12t0182300-01
Chr12	irgsp1_rep	mRNA	4178719	4182461	.	+	.	ID=Os12t0182333-00;Name=Os12t0182333-00;Locus_id=Os12g0182333;Note=Hypothetical protein.;Transcript_evidence=tplb0055l22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0182333-00
Chr12	irgsp1_rep	five_prime_UTR	4178719	4179217	.	+	.	Parent=Os12t0182333-00
Chr12	irgsp1_rep	five_prime_UTR	4179829	4181754	.	+	.	Parent=Os12t0182333-00
Chr12	irgsp1_rep	CDS	4181755	4182291	.	+	0	Parent=Os12t0182333-00
Chr12	irgsp1_rep	three_prime_UTR	4182292	4182461	.	+	.	Parent=Os12t0182333-00
Chr12	irgsp1_rep	mRNA	4184250	4186762	.	-	.	ID=Os12t0182366-00;Name=Os12t0182366-00;Locus_id=Os12g0182366;Note=Hypothetical conserved gene.;Transcript_evidence=CT835535 (DDBJ%2C Best hit);ORF_evidence=Q2QWU5 (UniProt);TENOR=Os12t0182366-00;KEGG=Os12t0182366-00
Chr12	irgsp1_rep	five_prime_UTR	4186600	4186762	.	-	.	Parent=Os12t0182366-00
Chr12	irgsp1_rep	five_prime_UTR	4184762	4184827	.	-	.	Parent=Os12t0182366-00
Chr12	irgsp1_rep	CDS	4184612	4184761	.	-	0	Parent=Os12t0182366-00
Chr12	irgsp1_rep	three_prime_UTR	4184250	4184611	.	-	.	Parent=Os12t0182366-00
Chr12	irgsp1_rep	mRNA	4189086	4189988	.	+	.	ID=Os12t0182500-01;Name=Os12t0182500-01;Locus_id=Os12g0182500;Note=Conserved hypothetical protein.;Transcript_evidence=AK064710 (DDBJ%2C Best hit);ORF_evidence=A2ZIQ3 (UniProt);NIAS_FLcDNA=002-118-B11;Expression=AK064710;TENOR=Os12t0182500-01;KEGG=Os12t0182500-01
Chr12	irgsp1_rep	five_prime_UTR	4189086	4189103	.	+	.	Parent=Os12t0182500-01
Chr12	irgsp1_rep	CDS	4189104	4189670	.	+	0	Parent=Os12t0182500-01
Chr12	irgsp1_rep	three_prime_UTR	4189671	4189988	.	+	.	Parent=Os12t0182500-01
Chr12	irgsp1_rep	mRNA	4191349	4193720	.	-	.	ID=Os12t0182600-01;Name=Os12t0182600-01;Locus_id=Os12g0182600;Note=Hypothetical conserved gene.;Transcript_evidence=AK120295 (DDBJ%2C Best hit);ORF_evidence=B8BNH4 (UniProt);InterPro=MTCP1 (IPR009069);NIAS_FLcDNA=J013051E22;Expression=AK120295;TENOR=Os12t0182600-01;KEGG=Os12t0182600-01
Chr12	irgsp1_rep	five_prime_UTR	4193624	4193720	.	-	.	Parent=Os12t0182600-01
Chr12	irgsp1_rep	CDS	4193538	4193623	.	-	0	Parent=Os12t0182600-01
Chr12	irgsp1_rep	CDS	4192178	4192283	.	-	1	Parent=Os12t0182600-01
Chr12	irgsp1_rep	three_prime_UTR	4192136	4192177	.	-	.	Parent=Os12t0182600-01
Chr12	irgsp1_rep	three_prime_UTR	4191817	4191872	.	-	.	Parent=Os12t0182600-01
Chr12	irgsp1_rep	three_prime_UTR	4191349	4191666	.	-	.	Parent=Os12t0182600-01
Chr12	irgsp1_rep	mRNA	4194063	4198878	.	+	.	ID=Os12t0182700-01;Name=Os12t0182700-01;Locus_id=Os12g0182700;CGSNL Gene Symbol=HDAC10;CGSNL Gene Name=HISTONE DEACETYLASE 10;Oryzabase Gene Symbol Synonym(s)=OsHDAC10;Oryzabase Gene Name Synonym(s)=histone deacetylase 10;Note=Histone deacetylase superfamily protein.;Transcript_evidence=AK072557 (DDBJ%2C Best hit);ORF_evidence=B6THU7 (UniProt);InterPro=Histone deacetylase superfamily (IPR000286),Histone deacetylase domain (IPR023801);NIAS_FLcDNA=J023134F05;Oryzabase=21093;Expression=AK072557;TENOR=Os12t0182700-01;KEGG=Os12t0182700-01
Chr12	irgsp1_rep	five_prime_UTR	4194063	4194129	.	+	.	Parent=Os12t0182700-01
Chr12	irgsp1_rep	CDS	4194130	4194169	.	+	0	Parent=Os12t0182700-01
Chr12	irgsp1_rep	CDS	4195160	4195410	.	+	2	Parent=Os12t0182700-01
Chr12	irgsp1_rep	CDS	4195769	4195843	.	+	0	Parent=Os12t0182700-01
Chr12	irgsp1_rep	CDS	4196129	4196230	.	+	0	Parent=Os12t0182700-01
Chr12	irgsp1_rep	CDS	4196446	4196517	.	+	0	Parent=Os12t0182700-01
Chr12	irgsp1_rep	CDS	4197130	4197186	.	+	0	Parent=Os12t0182700-01
Chr12	irgsp1_rep	CDS	4197307	4197558	.	+	0	Parent=Os12t0182700-01
Chr12	irgsp1_rep	CDS	4197657	4197838	.	+	0	Parent=Os12t0182700-01
Chr12	irgsp1_rep	CDS	4198237	4198537	.	+	1	Parent=Os12t0182700-01
Chr12	irgsp1_rep	three_prime_UTR	4198538	4198878	.	+	.	Parent=Os12t0182700-01
Chr12	irgsp1_rep	mRNA	4199350	4202558	.	+	.	ID=Os12t0182800-01;Name=Os12t0182800-01;Locus_id=Os12g0182800;Note=Similar to predicted protein.;Transcript_evidence=AK241985 (DDBJ%2C Best hit);ORF_evidence=A2ZIQ6 (UniProt);NIAS_FLcDNA=J075097P21;TENOR=Os12t0182800-01;KEGG=Os12t0182800-01
Chr12	irgsp1_rep	five_prime_UTR	4199350	4199584	.	+	.	Parent=Os12t0182800-01
Chr12	irgsp1_rep	five_prime_UTR	4200545	4200559	.	+	.	Parent=Os12t0182800-01
Chr12	irgsp1_rep	CDS	4200560	4200742	.	+	0	Parent=Os12t0182800-01
Chr12	irgsp1_rep	CDS	4201808	4201876	.	+	0	Parent=Os12t0182800-01
Chr12	irgsp1_rep	CDS	4201973	4202048	.	+	0	Parent=Os12t0182800-01
Chr12	irgsp1_rep	CDS	4202130	4202194	.	+	2	Parent=Os12t0182800-01
Chr12	irgsp1_rep	CDS	4202276	4202368	.	+	0	Parent=Os12t0182800-01
Chr12	irgsp1_rep	three_prime_UTR	4202369	4202558	.	+	.	Parent=Os12t0182800-01
Chr12	irgsp1_rep	mRNA	4203248	4207563	.	-	.	ID=Os12t0182900-00;Name=Os12t0182900-00;Locus_id=Os12g0182900;Note=Conserved hypothetical protein.;Transcript_evidence=AK071696 (DDBJ%2C Secondary hit);ORF_evidence=NP_001174911.1 (RefSeq);TENOR=Os12t0182900-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	4206950	4207563	.	-	.	Parent=Os12t0182900-00
Chr12	irgsp1_rep	five_prime_UTR	4205416	4205730	.	-	.	Parent=Os12t0182900-00
Chr12	irgsp1_rep	five_prime_UTR	4205178	4205408	.	-	.	Parent=Os12t0182900-00
Chr12	irgsp1_rep	five_prime_UTR	4205012	4205114	.	-	.	Parent=Os12t0182900-00
Chr12	irgsp1_rep	CDS	4204819	4205011	.	-	0	Parent=Os12t0182900-00
Chr12	irgsp1_rep	CDS	4204620	4204728	.	-	2	Parent=Os12t0182900-00
Chr12	irgsp1_rep	CDS	4204469	4204535	.	-	1	Parent=Os12t0182900-00
Chr12	irgsp1_rep	three_prime_UTR	4204225	4204468	.	-	.	Parent=Os12t0182900-00
Chr12	irgsp1_rep	three_prime_UTR	4204141	4204202	.	-	.	Parent=Os12t0182900-00
Chr12	irgsp1_rep	three_prime_UTR	4203800	4204024	.	-	.	Parent=Os12t0182900-00
Chr12	irgsp1_rep	three_prime_UTR	4203248	4203554	.	-	.	Parent=Os12t0182900-00
Chr12	irgsp1_rep	mRNA	4209290	4213068	.	+	.	ID=Os12t0183100-01;Name=Os12t0183100-01;Locus_id=Os12g0183100;Oryzabase Gene Name Synonym(s)=branched chain alpha-keto acid dehydrogenase E1-alpha subunit%2C senescence-associated dehydrogenase;Note=Similar to Branched chain alpha-keto acid dehydrogenase E1-alpha subunit (Fragment).;Transcript_evidence=AK060732 (DDBJ%2C Best hit);ORF_evidence=D2KZ14 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C disulfide as acceptor (GO:0016624);InterPro=Dehydrogenase%2C E1 component (IPR001017);NIAS_FLcDNA=001-032-A05;Oryzabase=13863;Expression=AK060732;TENOR=Os12t0183100-01;KEGG=Os12t0183100-01 (EC:1.2.4.4)
Chr12	irgsp1_rep	five_prime_UTR	4209290	4209378	.	+	.	Parent=Os12t0183100-01
Chr12	irgsp1_rep	CDS	4209379	4209654	.	+	0	Parent=Os12t0183100-01
Chr12	irgsp1_rep	CDS	4211121	4211258	.	+	0	Parent=Os12t0183100-01
Chr12	irgsp1_rep	CDS	4211371	4211553	.	+	0	Parent=Os12t0183100-01
Chr12	irgsp1_rep	CDS	4211657	4211814	.	+	0	Parent=Os12t0183100-01
Chr12	irgsp1_rep	CDS	4211898	4211997	.	+	1	Parent=Os12t0183100-01
Chr12	irgsp1_rep	CDS	4212078	4212189	.	+	0	Parent=Os12t0183100-01
Chr12	irgsp1_rep	CDS	4212273	4212412	.	+	2	Parent=Os12t0183100-01
Chr12	irgsp1_rep	CDS	4212482	4212667	.	+	0	Parent=Os12t0183100-01
Chr12	irgsp1_rep	CDS	4212755	4212922	.	+	0	Parent=Os12t0183100-01
Chr12	irgsp1_rep	three_prime_UTR	4212923	4213068	.	+	.	Parent=Os12t0183100-01
Chr12	irgsp1_rep	mRNA	4209291	4213014	.	+	.	ID=Os12t0183100-02;Name=Os12t0183100-02;Locus_id=Os12g0183100;Oryzabase Gene Name Synonym(s)=branched chain alpha-keto acid dehydrogenase E1-alpha subunit%2C senescence-associated dehydrogenase;Note=Similar to Branched-chain alpha keto-acid dehydrogenase E1 alpha subunit-like protein.;Transcript_evidence=AK064862 (DDBJ%2C Best hit);ORF_evidence=D2KZ14 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C disulfide as acceptor (GO:0016624);InterPro=Dehydrogenase%2C E1 component (IPR001017);NIAS_FLcDNA=J013000I03;Oryzabase=13863;Expression=AK064862;TENOR=Os12t0183100-02;KEGG=Os12t0183100-02 (EC:1.2.4.4)
Chr12	irgsp1_rep	five_prime_UTR	4209291	4209378	.	+	.	Parent=Os12t0183100-02
Chr12	irgsp1_rep	CDS	4209379	4209654	.	+	0	Parent=Os12t0183100-02
Chr12	irgsp1_rep	CDS	4211121	4211258	.	+	0	Parent=Os12t0183100-02
Chr12	irgsp1_rep	CDS	4211371	4211553	.	+	0	Parent=Os12t0183100-02
Chr12	irgsp1_rep	CDS	4211657	4211818	.	+	0	Parent=Os12t0183100-02
Chr12	irgsp1_rep	three_prime_UTR	4211819	4211997	.	+	.	Parent=Os12t0183100-02
Chr12	irgsp1_rep	three_prime_UTR	4212078	4212189	.	+	.	Parent=Os12t0183100-02
Chr12	irgsp1_rep	three_prime_UTR	4212273	4212412	.	+	.	Parent=Os12t0183100-02
Chr12	irgsp1_rep	three_prime_UTR	4212482	4212667	.	+	.	Parent=Os12t0183100-02
Chr12	irgsp1_rep	three_prime_UTR	4212755	4213014	.	+	.	Parent=Os12t0183100-02
Chr12	irgsp1_rep	mRNA	4211554	4213112	.	+	.	ID=Os12t0183100-03;Name=Os12t0183100-03;Locus_id=Os12g0183100;Oryzabase Gene Name Synonym(s)=branched chain alpha-keto acid dehydrogenase E1-alpha subunit%2C senescence-associated dehydrogenase;Note=Similar to Branched-chain alpha keto-acid dehydrogenase E1 alpha subunit-like protein.;Transcript_evidence=AK068933 (DDBJ%2C Best hit);ORF_evidence=D2KZ14 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: oxidoreductase activity%2C acting on the aldehyde or oxo group of donors%2C disulfide as acceptor (GO:0016624);InterPro=Dehydrogenase%2C E1 component (IPR001017);NIAS_FLcDNA=J023002N22;Oryzabase=13863;Expression=AK068933;TENOR=Os12t0183100-03;KEGG=Os12t0183100-03 (EC:1.2.4.4)
Chr12	irgsp1_rep	five_prime_UTR	4211554	4211650	.	+	.	Parent=Os12t0183100-03
Chr12	irgsp1_rep	CDS	4211651	4211814	.	+	0	Parent=Os12t0183100-03
Chr12	irgsp1_rep	CDS	4211898	4211997	.	+	1	Parent=Os12t0183100-03
Chr12	irgsp1_rep	CDS	4212078	4212189	.	+	0	Parent=Os12t0183100-03
Chr12	irgsp1_rep	CDS	4212273	4212412	.	+	2	Parent=Os12t0183100-03
Chr12	irgsp1_rep	CDS	4212482	4212667	.	+	0	Parent=Os12t0183100-03
Chr12	irgsp1_rep	CDS	4212755	4212922	.	+	0	Parent=Os12t0183100-03
Chr12	irgsp1_rep	three_prime_UTR	4212923	4213112	.	+	.	Parent=Os12t0183100-03
Chr12	irgsp1_rep	mRNA	4213199	4216353	.	-	.	ID=Os12t0183200-00;Name=Os12t0183200-00;Locus_id=Os12g0183200;Note=Similar to 3'(2')%2C5'-bisphosphate nucleotidase.;Transcript_evidence=ab initio prediction;ORF_evidence=P0C5A3 (UniProt);GO=Molecular Function: inositol or phosphatidylinositol phosphatase activity (GO:0004437);InterPro=Inositol monophosphatase (IPR000760),Inositol monophosphatase%2C conserved site (IPR020550),Inositol monophosphatase%2C metal-binding site (IPR020583);TENOR=Os12t0183200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	4216249	4216353	.	-	0	Parent=Os12t0183200-00
Chr12	irgsp1_rep	CDS	4215961	4216036	.	-	0	Parent=Os12t0183200-00
Chr12	irgsp1_rep	CDS	4215721	4215794	.	-	2	Parent=Os12t0183200-00
Chr12	irgsp1_rep	CDS	4215430	4215632	.	-	0	Parent=Os12t0183200-00
Chr12	irgsp1_rep	CDS	4213910	4214117	.	-	1	Parent=Os12t0183200-00
Chr12	irgsp1_rep	CDS	4213469	4213622	.	-	0	Parent=Os12t0183200-00
Chr12	irgsp1_rep	CDS	4213199	4213362	.	-	2	Parent=Os12t0183200-00
Chr12	irgsp1_rep	mRNA	4213469	4215662	.	+	.	ID=Os12t0183250-00;Name=Os12t0183250-00;Locus_id=Os12g0183250;Note=Non-protein coding transcript.;Transcript_evidence=AM939970 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0183250-00
Chr12	irgsp1_rep	exon	4213469	4213652	.	+	.	Parent=Os12t0183250-00
Chr12	irgsp1_rep	exon	4213740	4213816	.	+	.	Parent=Os12t0183250-00
Chr12	irgsp1_rep	exon	4213924	4214115	.	+	.	Parent=Os12t0183250-00
Chr12	irgsp1_rep	exon	4215428	4215662	.	+	.	Parent=Os12t0183250-00
Chr12	irgsp1_rep	mRNA	4216583	4217770	.	-	.	ID=Os12t0183300-01;Name=Os12t0183300-01;Locus_id=Os12g0183300;Oryzabase Gene Symbol Synonym(s)=RHL;Oryzabase Gene Name Synonym(s)=Hal2-like protein%2C HAL2 Homolog;Note=Similar to 3'(2')%2C5'-bisphosphate nucleotidase.;Transcript_evidence=AK058937 (DDBJ%2C Best hit);ORF_evidence=P0C5A3 (UniProt);GO=Molecular Function: inositol or phosphatidylinositol phosphatase activity (GO:0004437);InterPro=Inositol monophosphatase (IPR000760),Inositol monophosphatase%2C conserved site (IPR020550);NIAS_FLcDNA=001-009-F07;Oryzabase=13752;Expression=AK058937;TENOR=Os12t0183300-01;KEGG=Os12t0183300-01 (EC:3.1.3.7)
Chr12	irgsp1_rep	five_prime_UTR	4217769	4217770	.	-	.	Parent=Os12t0183300-01
Chr12	irgsp1_rep	CDS	4217592	4217768	.	-	0	Parent=Os12t0183300-01
Chr12	irgsp1_rep	CDS	4217392	4217490	.	-	0	Parent=Os12t0183300-01
Chr12	irgsp1_rep	CDS	4217161	4217314	.	-	0	Parent=Os12t0183300-01
Chr12	irgsp1_rep	CDS	4216826	4216998	.	-	2	Parent=Os12t0183300-01
Chr12	irgsp1_rep	three_prime_UTR	4216583	4216825	.	-	.	Parent=Os12t0183300-01
Chr12	irgsp1_rep	mRNA	4217161	4218461	.	+	.	ID=Os12t0183375-00;Name=Os12t0183375-00;Locus_id=Os12g0183375;Note=Non-protein coding transcript.;Transcript_evidence=AM939970 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0183375-00
Chr12	irgsp1_rep	exon	4217161	4217310	.	+	.	Parent=Os12t0183375-00
Chr12	irgsp1_rep	exon	4217385	4217490	.	+	.	Parent=Os12t0183375-00
Chr12	irgsp1_rep	exon	4217592	4217786	.	+	.	Parent=Os12t0183375-00
Chr12	irgsp1_rep	exon	4218243	4218461	.	+	.	Parent=Os12t0183375-00
Chr12	irgsp1_rep	mRNA	4220640	4221273	.	-	.	ID=Os12t0183450-00;Name=Os12t0183450-00;Locus_id=Os12g0183450;Note=Similar to OSIGBa0104J13.2 protein.;Transcript_evidence=EU969806 (DDBJ);ORF_evidence=Q01LM3 (UniProt);TENOR=Os12t0183450-00;KEGG=Os12t0183450-00
Chr12	irgsp1_rep	five_prime_UTR	4221116	4221273	.	-	.	Parent=Os12t0183450-00
Chr12	irgsp1_rep	CDS	4220678	4221115	.	-	0	Parent=Os12t0183450-00
Chr12	irgsp1_rep	three_prime_UTR	4220640	4220677	.	-	.	Parent=Os12t0183450-00
Chr12	irgsp1_rep	mRNA	4226314	4226682	.	-	.	ID=Os12t0184033-00;Name=Os12t0184033-00;Locus_id=Os12g0184033;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QWT1 (UniProt);TENOR=Os12t0184033-00
Chr12	irgsp1_rep	CDS	4226314	4226682	.	-	0	Parent=Os12t0184033-00
Chr12	irgsp1_rep	mRNA	4230175	4232642	.	-	.	ID=Os12t0184167-01;Name=Os12t0184167-01;Locus_id=Os12g0184167;Note=Conserved hypothetical protein.;Transcript_evidence=AK242338 (DDBJ%2C Best hit);ORF_evidence=Q6ZKG7 (UniProt);NIAS_FLcDNA=J075199N15;TENOR=Os12t0184167-01
Chr12	irgsp1_rep	five_prime_UTR	4231186	4232642	.	-	.	Parent=Os12t0184167-01
Chr12	irgsp1_rep	CDS	4231009	4231185	.	-	0	Parent=Os12t0184167-01
Chr12	irgsp1_rep	three_prime_UTR	4230175	4231008	.	-	.	Parent=Os12t0184167-01
Chr12	irgsp1_rep	mRNA	4246726	4247512	.	-	.	ID=Os12t0184300-00;Name=Os12t0184300-00;Locus_id=Os12g0184300;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QWS8 (UniProt);TENOR=Os12t0184300-00
Chr12	irgsp1_rep	CDS	4247399	4247512	.	-	0	Parent=Os12t0184300-00
Chr12	irgsp1_rep	CDS	4246726	4247142	.	-	0	Parent=Os12t0184300-00
Chr12	irgsp1_rep	mRNA	4334013	4338337	.	-	.	ID=Os12t0185900-01;Name=Os12t0185900-01;Locus_id=Os12g0185900;Note=Similar to Zinc knuckle family protein.;Transcript_evidence=AK243562 (DDBJ%2C Best hit);ORF_evidence=Q2QUF8 (UniProt);NIAS_FLcDNA=J100080K03;TENOR=Os12t0185900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	4334512	4338337	.	-	.	Parent=Os12t0185900-01
Chr12	irgsp1_rep	CDS	4334383	4334511	.	-	0	Parent=Os12t0185900-01
Chr12	irgsp1_rep	three_prime_UTR	4334013	4334382	.	-	.	Parent=Os12t0185900-01
Chr12	irgsp1_rep	mRNA	4337666	4349059	.	+	.	ID=Os12t0186600-02;Name=Os12t0186600-02;Locus_id=Os12g0186600;Note=Conserved hypothetical protein.;Transcript_evidence=AK067108 (DDBJ%2C Best hit);ORF_evidence=Q94H36 (UniProt);NIAS_FLcDNA=J013095C08;TENOR=Os12t0186600-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	4337666	4337916	.	+	.	Parent=Os12t0186600-02
Chr12	irgsp1_rep	five_prime_UTR	4339921	4340012	.	+	.	Parent=Os12t0186600-02
Chr12	irgsp1_rep	CDS	4340013	4340013	.	+	0	Parent=Os12t0186600-02
Chr12	irgsp1_rep	CDS	4347320	4347447	.	+	2	Parent=Os12t0186600-02
Chr12	irgsp1_rep	CDS	4347516	4347701	.	+	0	Parent=Os12t0186600-02
Chr12	irgsp1_rep	CDS	4347772	4347798	.	+	0	Parent=Os12t0186600-02
Chr12	irgsp1_rep	three_prime_UTR	4347799	4349059	.	+	.	Parent=Os12t0186600-02
Chr12	irgsp1_rep	mRNA	4337662	4348790	.	+	.	ID=Os12t0186600-03;Name=Os12t0186600-03;Locus_id=Os12g0186600;Note=Similar to OSIGBa0136B09.6 protein.;Transcript_evidence=AK104628 (DDBJ%2C Best hit);ORF_evidence=Q01LU5 (UniProt);NIAS_FLcDNA=006-310-B11;TENOR=Os12t0186600-03;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	4337662	4337916	.	+	.	Parent=Os12t0186600-03
Chr12	irgsp1_rep	five_prime_UTR	4339921	4340012	.	+	.	Parent=Os12t0186600-03
Chr12	irgsp1_rep	CDS	4340013	4340013	.	+	0	Parent=Os12t0186600-03
Chr12	irgsp1_rep	CDS	4347320	4347447	.	+	2	Parent=Os12t0186600-03
Chr12	irgsp1_rep	CDS	4347516	4347701	.	+	0	Parent=Os12t0186600-03
Chr12	irgsp1_rep	CDS	4347772	4347798	.	+	0	Parent=Os12t0186600-03
Chr12	irgsp1_rep	three_prime_UTR	4347799	4347830	.	+	.	Parent=Os12t0186600-03
Chr12	irgsp1_rep	three_prime_UTR	4347911	4348790	.	+	.	Parent=Os12t0186600-03
Chr12	irgsp1_rep	mRNA	4398326	4399978	.	+	.	ID=Os12t0187500-00;Name=Os12t0187500-00;Locus_id=Os12g0187500;Note=Similar to C2 domain containing protein.;Transcript_evidence=AK374644 (DDBJ);ORF_evidence=Q2QWP5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium-dependent membrane targeting (IPR000008),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),Phosphoribosyltransferase C-terminal (IPR013583);TENOR=Os12t0187500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	4398326	4399978	.	+	0	Parent=Os12t0187500-00
Chr12	irgsp1_rep	mRNA	4412608	4415933	.	-	.	ID=Os12t0187800-00;Name=Os12t0187800-00;Locus_id=Os12g0187800;Oryzabase Gene Symbol Synonym(s)=OsEnS-148;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 148;Note=Conserved hypothetical protein.;Transcript_evidence=CT835599 (DDBJ%2C Best hit);ORF_evidence=NP_001066329.1 (RefSeq);Oryzabase=18431;TENOR=Os12t0187800-00;KEGG=Os12t0187800-00
Chr12	irgsp1_rep	five_prime_UTR	4415762	4415933	.	-	.	Parent=Os12t0187800-00
Chr12	irgsp1_rep	CDS	4415648	4415761	.	-	0	Parent=Os12t0187800-00
Chr12	irgsp1_rep	CDS	4412919	4413200	.	-	0	Parent=Os12t0187800-00
Chr12	irgsp1_rep	three_prime_UTR	4412888	4412918	.	-	.	Parent=Os12t0187800-00
Chr12	irgsp1_rep	three_prime_UTR	4412688	4412881	.	-	.	Parent=Os12t0187800-00
Chr12	irgsp1_rep	three_prime_UTR	4412608	4412679	.	-	.	Parent=Os12t0187800-00
Chr12	irgsp1_rep	mRNA	4447667	4451150	.	+	.	ID=Os12t0188500-01;Name=Os12t0188500-01;Locus_id=Os12g0188500;Note=Hypothetical conserved gene.;Transcript_evidence=AK288594 (DDBJ%2C Best hit);ORF_evidence=B8BNI1 (UniProt);NIAS_FLcDNA=J090051D15;TENOR=Os12t0188500-01;KEGG=Os12t0188500-01
Chr12	irgsp1_rep	five_prime_UTR	4447667	4447686	.	+	.	Parent=Os12t0188500-01
Chr12	irgsp1_rep	CDS	4447687	4448340	.	+	0	Parent=Os12t0188500-01
Chr12	irgsp1_rep	CDS	4450128	4451048	.	+	0	Parent=Os12t0188500-01
Chr12	irgsp1_rep	three_prime_UTR	4451049	4451150	.	+	.	Parent=Os12t0188500-01
Chr12	irgsp1_rep	mRNA	4455513	4462965	.	+	.	ID=Os12t0188566-01;Name=Os12t0188566-01;Locus_id=Os12g0188566;Note=Similar to Thioredoxin (TRX).;Transcript_evidence=AK241164 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065116B16;TENOR=Os12t0188566-01;KEGG=Os12t0188566-01
Chr12	irgsp1_rep	five_prime_UTR	4455513	4455848	.	+	.	Parent=Os12t0188566-01
Chr12	irgsp1_rep	five_prime_UTR	4461642	4461679	.	+	.	Parent=Os12t0188566-01
Chr12	irgsp1_rep	five_prime_UTR	4462019	4462190	.	+	.	Parent=Os12t0188566-01
Chr12	irgsp1_rep	CDS	4462191	4462520	.	+	0	Parent=Os12t0188566-01
Chr12	irgsp1_rep	three_prime_UTR	4462521	4462965	.	+	.	Parent=Os12t0188566-01
Chr12	irgsp1_rep	mRNA	4461828	4462756	.	-	.	ID=Os12t0188700-01;Name=Os12t0188700-01;Locus_id=Os12g0188700;CGSNL Gene Symbol=TRXM5;CGSNL Gene Name=THIOREDOXIN M-TYPE 5;Oryzabase Gene Symbol Synonym(s)=OsTRX m5%2C Ostrxm5%2C OsTRXM5%2C OsTrxm;Oryzabase Gene Name Synonym(s)=thioredoxin m%2C thioredoxin m-type%2C thioredoxin M5%2C Thioredoxin m-type isoform;Note=Similar to Thioredoxin M5%2C chloroplastic.;Transcript_evidence=AK120500 (DDBJ%2C Best hit);ORF_evidence=Q9ZP20 (UniProt);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Thioredoxin (IPR005746),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766),Thioredoxin%2C conserved site (IPR017937);NIAS_FLcDNA=J013122B18;Oryzabase=9708;TENOR=Os12t0188700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	4462662	4462756	.	-	.	Parent=Os12t0188700-01
Chr12	irgsp1_rep	CDS	4462463	4462661	.	-	0	Parent=Os12t0188700-01
Chr12	irgsp1_rep	CDS	4462228	4462377	.	-	2	Parent=Os12t0188700-01
Chr12	irgsp1_rep	CDS	4462058	4462149	.	-	2	Parent=Os12t0188700-01
Chr12	irgsp1_rep	three_prime_UTR	4461828	4462057	.	-	.	Parent=Os12t0188700-01
Chr12	irgsp1_rep	mRNA	4461716	4462738	.	-	.	ID=Os12t0188700-02;Name=Os12t0188700-02;Locus_id=Os12g0188700;RAP-DB Gene Symbol Synonym(s)=OsTrxm;RAP-DB Gene Name Synonym(s)=Thioredoxin m-type;CGSNL Gene Symbol=TRXM5;CGSNL Gene Name=THIOREDOXIN M-TYPE 5;Oryzabase Gene Symbol Synonym(s)=OsTRX m5%2C Ostrxm5%2C OsTRXM5%2C OsTrxm;Oryzabase Gene Name Synonym(s)=thioredoxin m%2C thioredoxin m-type%2C thioredoxin M5%2C Thioredoxin m-type isoform;Note=Thioredoxin m-type isoform%2C Redox regulation of chloroplast target proteins%2C Antifungal protein;Transcript_evidence=AK061678;ORF_evidence=Q9ZP20;GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Thioredoxin-like superfamily (IPR036249),Thioredoxin (IPR005746),Thioredoxin domain (IPR013766),Thioredoxin%2C conserved site (IPR017937);NIAS_FLcDNA=001-036-H09;Manual Curation=December 6%2C 2019;Literature_PMID=31795318,18723667;Oryzabase=9708;Expression=AK061678;TENOR=Os12t0188700-02;Subcellular location=chloroplast (GO:0009507)
Chr12	irgsp1_rep	five_prime_UTR	4462662	4462738	.	-	.	Parent=Os12t0188700-02
Chr12	irgsp1_rep	CDS	4462463	4462661	.	-	0	Parent=Os12t0188700-02
Chr12	irgsp1_rep	CDS	4462058	4462377	.	-	2	Parent=Os12t0188700-02
Chr12	irgsp1_rep	three_prime_UTR	4461716	4462057	.	-	.	Parent=Os12t0188700-02
Chr12	irgsp1_rep	mRNA	4469907	4475379	.	+	.	ID=Os12t0188900-01;Name=Os12t0188900-01;Locus_id=Os12g0188900;Note=Exonuclease domain containing protein.;Transcript_evidence=AK242871 (DDBJ%2C Best hit);ORF_evidence=C4J3C8 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: exonuclease activity (GO:0004527);InterPro=Exonuclease (IPR006055),Ribonuclease H-like (IPR012337),Exonuclease%2C RNase T/DNA polymerase III (IPR013520);NIAS_FLcDNA=J090076M01;TENOR=Os12t0188900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	4469907	4470067	.	+	.	Parent=Os12t0188900-01
Chr12	irgsp1_rep	five_prime_UTR	4470898	4470920	.	+	.	Parent=Os12t0188900-01
Chr12	irgsp1_rep	CDS	4470921	4470954	.	+	0	Parent=Os12t0188900-01
Chr12	irgsp1_rep	CDS	4471034	4471104	.	+	2	Parent=Os12t0188900-01
Chr12	irgsp1_rep	CDS	4471795	4471928	.	+	0	Parent=Os12t0188900-01
Chr12	irgsp1_rep	CDS	4472060	4472166	.	+	1	Parent=Os12t0188900-01
Chr12	irgsp1_rep	CDS	4472682	4472789	.	+	2	Parent=Os12t0188900-01
Chr12	irgsp1_rep	CDS	4472866	4472936	.	+	2	Parent=Os12t0188900-01
Chr12	irgsp1_rep	CDS	4473113	4473172	.	+	0	Parent=Os12t0188900-01
Chr12	irgsp1_rep	CDS	4473251	4473306	.	+	0	Parent=Os12t0188900-01
Chr12	irgsp1_rep	CDS	4473650	4473710	.	+	1	Parent=Os12t0188900-01
Chr12	irgsp1_rep	CDS	4473796	4474063	.	+	0	Parent=Os12t0188900-01
Chr12	irgsp1_rep	CDS	4474161	4474384	.	+	2	Parent=Os12t0188900-01
Chr12	irgsp1_rep	three_prime_UTR	4474385	4474723	.	+	.	Parent=Os12t0188900-01
Chr12	irgsp1_rep	three_prime_UTR	4474830	4474955	.	+	.	Parent=Os12t0188900-01
Chr12	irgsp1_rep	three_prime_UTR	4475035	4475379	.	+	.	Parent=Os12t0188900-01
Chr12	irgsp1_rep	mRNA	4469983	4474960	.	-	.	ID=Os12t0189100-00;Name=Os12t0189100-00;Locus_id=Os12g0189100;Note=Hypothetical protein.;Transcript_evidence=tplb0039b14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0189100-00
Chr12	irgsp1_rep	five_prime_UTR	4474816	4474960	.	-	.	Parent=Os12t0189100-00
Chr12	irgsp1_rep	five_prime_UTR	4474443	4474710	.	-	.	Parent=Os12t0189100-00
Chr12	irgsp1_rep	five_prime_UTR	4474246	4474349	.	-	.	Parent=Os12t0189100-00
Chr12	irgsp1_rep	CDS	4474159	4474245	.	-	0	Parent=Os12t0189100-00
Chr12	irgsp1_rep	CDS	4473792	4474061	.	-	0	Parent=Os12t0189100-00
Chr12	irgsp1_rep	three_prime_UTR	4473791	4473791	.	-	.	Parent=Os12t0189100-00
Chr12	irgsp1_rep	three_prime_UTR	4473592	4473705	.	-	.	Parent=Os12t0189100-00
Chr12	irgsp1_rep	three_prime_UTR	4473105	4473179	.	-	.	Parent=Os12t0189100-00
Chr12	irgsp1_rep	three_prime_UTR	4472845	4472926	.	-	.	Parent=Os12t0189100-00
Chr12	irgsp1_rep	three_prime_UTR	4472673	4472775	.	-	.	Parent=Os12t0189100-00
Chr12	irgsp1_rep	three_prime_UTR	4472068	4472154	.	-	.	Parent=Os12t0189100-00
Chr12	irgsp1_rep	three_prime_UTR	4471811	4471937	.	-	.	Parent=Os12t0189100-00
Chr12	irgsp1_rep	three_prime_UTR	4470997	4471120	.	-	.	Parent=Os12t0189100-00
Chr12	irgsp1_rep	three_prime_UTR	4469983	4470078	.	-	.	Parent=Os12t0189100-00
Chr12	irgsp1_rep	mRNA	4499739	4503900	.	+	.	ID=Os12t0189300-01;Name=Os12t0189300-01;Locus_id=Os12g0189300;Note=Pyruvate/Phosphoenolpyruvate kinase%2C catalytic core domain containing protein.;Transcript_evidence=AK068710 (DDBJ%2C Best hit);ORF_evidence=NP_565148.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Isocitrate lyase/phosphorylmutase (IPR000918),Pyruvate/Phosphoenolpyruvate kinase (IPR015813),Isocitrate lyase/phosphorylmutase%2C conserved site (IPR018523);NIAS_FLcDNA=J013159K10;Expression=AK068710;TENOR=Os12t0189300-01;KEGG=Os12t0189300-01
Chr12	irgsp1_rep	five_prime_UTR	4499739	4499871	.	+	.	Parent=Os12t0189300-01
Chr12	irgsp1_rep	CDS	4499872	4499941	.	+	0	Parent=Os12t0189300-01
Chr12	irgsp1_rep	CDS	4500026	4500125	.	+	2	Parent=Os12t0189300-01
Chr12	irgsp1_rep	CDS	4500236	4500309	.	+	1	Parent=Os12t0189300-01
Chr12	irgsp1_rep	CDS	4501034	4501116	.	+	2	Parent=Os12t0189300-01
Chr12	irgsp1_rep	CDS	4501285	4501309	.	+	0	Parent=Os12t0189300-01
Chr12	irgsp1_rep	CDS	4501426	4501445	.	+	2	Parent=Os12t0189300-01
Chr12	irgsp1_rep	CDS	4502250	4502396	.	+	0	Parent=Os12t0189300-01
Chr12	irgsp1_rep	CDS	4502981	4503448	.	+	0	Parent=Os12t0189300-01
Chr12	irgsp1_rep	three_prime_UTR	4503449	4503900	.	+	.	Parent=Os12t0189300-01
Chr12	irgsp1_rep	mRNA	4503580	4503902	.	+	.	ID=Os12t0189300-02;Name=Os12t0189300-02;Locus_id=Os12g0189300;Note=Non-protein coding transcript.;Transcript_evidence=AK058936 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-009-F03;TENOR=Os12t0189300-02
Chr12	irgsp1_rep	exon	4503580	4503902	.	+	.	Parent=Os12t0189300-02
Chr12	irgsp1_rep	mRNA	4506779	4507716	.	+	.	ID=Os12t0189400-01;Name=Os12t0189400-01;Locus_id=Os12g0189400;CGSNL Gene Symbol=PSAN;Oryzabase Gene Symbol Synonym(s)=psaN%2C OspsaN%2C PN%2C OsPN;Oryzabase Gene Name Synonym(s)=PSI subunit N%2C Photosystem I reaction center subunit n%2C PSI reaction center subunit n%2C photosystem I subunit PsaN;Note=Similar to Photosystem I reaction centre subunit N%2C chloroplast precursor (PSI- N).;Transcript_evidence=AK059037 (DDBJ%2C Best hit);ORF_evidence=B4FAC2 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem I (GO:0009522),Cellular Component: thylakoid membrane (GO:0042651),Molecular Function: calmodulin binding (GO:0005516);InterPro=Photosystem I PsaN%2C reaction centre subunit N (IPR008796);NIAS_FLcDNA=001-021-C11;Oryzabase=12448;Expression=AK059037;TENOR=Os12t0189400-01;KEGG=Os12t0189400-01
Chr12	irgsp1_rep	five_prime_UTR	4506779	4506826	.	+	.	Parent=Os12t0189400-01
Chr12	irgsp1_rep	CDS	4506827	4507060	.	+	0	Parent=Os12t0189400-01
Chr12	irgsp1_rep	CDS	4507183	4507308	.	+	0	Parent=Os12t0189400-01
Chr12	irgsp1_rep	CDS	4507469	4507558	.	+	0	Parent=Os12t0189400-01
Chr12	irgsp1_rep	three_prime_UTR	4507559	4507716	.	+	.	Parent=Os12t0189400-01
Chr12	irgsp1_rep	mRNA	4515673	4517450	.	-	.	ID=Os12t0189500-00;Name=Os12t0189500-00;Locus_id=Os12g0189500;CGSNL Gene Symbol=YUCCA11;CGSNL Gene Name=YUCCA-LIKE GENE 11;Oryzabase Gene Symbol Synonym(s)=OsYUCCA11%2C OsYUC11;Note=Similar to flavin monooxygenase.;Transcript_evidence=EU972494 (DDBJ);ORF_evidence=NP_001105991.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: flavin-containing monooxygenase activity (GO:0004499),Molecular Function: flavin adenine dinucleotide binding (GO:0050660),Molecular Function: NADP binding (GO:0050661);InterPro=FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR013027),Flavin monooxygenase-like (IPR020946);Oryzabase=9109;TENOR=Os12t0189500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	4516734	4517450	.	-	0	Parent=Os12t0189500-00
Chr12	irgsp1_rep	CDS	4516368	4516604	.	-	0	Parent=Os12t0189500-00
Chr12	irgsp1_rep	CDS	4516155	4516277	.	-	0	Parent=Os12t0189500-00
Chr12	irgsp1_rep	CDS	4515673	4515855	.	-	0	Parent=Os12t0189500-00
Chr12	irgsp1_rep	mRNA	4522509	4523612	.	+	.	ID=Os12t0189700-01;Name=Os12t0189700-01;Locus_id=Os12g0189700;Note=Twin arginine translocation signal%2C Tat domain containing protein.;Transcript_evidence=AK287777 (DDBJ%2C Best hit);ORF_evidence=A9P324 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Twin-arginine translocation pathway%2C signal sequence (IPR006311),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J065171B09;TENOR=Os12t0189700-01;KEGG=Os12t0189700-01
Chr12	irgsp1_rep	five_prime_UTR	4522509	4522602	.	+	.	Parent=Os12t0189700-01
Chr12	irgsp1_rep	CDS	4522603	4523283	.	+	0	Parent=Os12t0189700-01
Chr12	irgsp1_rep	three_prime_UTR	4523284	4523612	.	+	.	Parent=Os12t0189700-01
Chr12	irgsp1_rep	mRNA	4527362	4532699	.	+	.	ID=Os12t0189900-01;Name=Os12t0189900-01;Locus_id=Os12g0189900;Note=Las1-like family protein.;Transcript_evidence=AK066052 (DDBJ%2C Best hit);ORF_evidence=B8BNI5 (UniProt);InterPro=Las1-like (IPR007174);NIAS_FLcDNA=J013050F15;Expression=AK066052;TENOR=Os12t0189900-01;KEGG=Os12t0189900-01
Chr12	irgsp1_rep	five_prime_UTR	4527362	4528755	.	+	.	Parent=Os12t0189900-01
Chr12	irgsp1_rep	CDS	4528756	4528911	.	+	0	Parent=Os12t0189900-01
Chr12	irgsp1_rep	CDS	4529025	4529116	.	+	0	Parent=Os12t0189900-01
Chr12	irgsp1_rep	CDS	4529244	4529316	.	+	1	Parent=Os12t0189900-01
Chr12	irgsp1_rep	CDS	4529784	4529892	.	+	0	Parent=Os12t0189900-01
Chr12	irgsp1_rep	CDS	4529974	4530029	.	+	2	Parent=Os12t0189900-01
Chr12	irgsp1_rep	CDS	4530183	4530333	.	+	0	Parent=Os12t0189900-01
Chr12	irgsp1_rep	CDS	4531210	4531515	.	+	2	Parent=Os12t0189900-01
Chr12	irgsp1_rep	CDS	4531740	4532584	.	+	2	Parent=Os12t0189900-01
Chr12	irgsp1_rep	three_prime_UTR	4532585	4532699	.	+	.	Parent=Os12t0189900-01
Chr12	irgsp1_rep	mRNA	4533049	4537221	.	-	.	ID=Os12t0190000-01;Name=Os12t0190000-01;Locus_id=Os12g0190000;Oryzabase Gene Symbol Synonym(s)=OsGGP%2C GGP;Oryzabase Gene Name Synonym(s)=GDP-L-galactose phosphorylase;Note=Similar to VTC2.;Transcript_evidence=AK071188 (DDBJ%2C Best hit);ORF_evidence=NP_001150222.1 (RefSeq);NIAS_FLcDNA=J023086M14;Oryzabase=19913;Expression=AK071188;TENOR=Os12t0190000-01;KEGG=Os12t0190000-01
Chr12	irgsp1_rep	five_prime_UTR	4536789	4537221	.	-	.	Parent=Os12t0190000-01
Chr12	irgsp1_rep	CDS	4536656	4536788	.	-	0	Parent=Os12t0190000-01
Chr12	irgsp1_rep	CDS	4536019	4536122	.	-	2	Parent=Os12t0190000-01
Chr12	irgsp1_rep	CDS	4534928	4535233	.	-	0	Parent=Os12t0190000-01
Chr12	irgsp1_rep	CDS	4534657	4534842	.	-	0	Parent=Os12t0190000-01
Chr12	irgsp1_rep	CDS	4533962	4534222	.	-	0	Parent=Os12t0190000-01
Chr12	irgsp1_rep	CDS	4533385	4533711	.	-	0	Parent=Os12t0190000-01
Chr12	irgsp1_rep	three_prime_UTR	4533049	4533384	.	-	.	Parent=Os12t0190000-01
Chr12	irgsp1_rep	mRNA	4533084	4535144	.	-	.	ID=Os12t0190000-02;Name=Os12t0190000-02;Locus_id=Os12g0190000;Oryzabase Gene Symbol Synonym(s)=OsGGP%2C GGP;Oryzabase Gene Name Synonym(s)=GDP-L-galactose phosphorylase;Note=Similar to VTC2.;Transcript_evidence=AK059556 (DDBJ%2C Best hit);ORF_evidence=NP_001150222.1 (RefSeq);NIAS_FLcDNA=001-029-G08;Oryzabase=19913;Expression=AK059556;TENOR=Os12t0190000-02;KEGG=Os12t0190000-02
Chr12	irgsp1_rep	five_prime_UTR	4535144	4535144	.	-	.	Parent=Os12t0190000-02
Chr12	irgsp1_rep	CDS	4534928	4535143	.	-	0	Parent=Os12t0190000-02
Chr12	irgsp1_rep	CDS	4534657	4534842	.	-	0	Parent=Os12t0190000-02
Chr12	irgsp1_rep	CDS	4533962	4534222	.	-	0	Parent=Os12t0190000-02
Chr12	irgsp1_rep	CDS	4533385	4533711	.	-	0	Parent=Os12t0190000-02
Chr12	irgsp1_rep	three_prime_UTR	4533084	4533384	.	-	.	Parent=Os12t0190000-02
Chr12	irgsp1_rep	mRNA	4551091	4556193	.	+	.	ID=Os12t0190100-01;Name=Os12t0190100-01;Locus_id=Os12g0190100;Note=Similar to Auxin-independent growth promoter-like protein.;Transcript_evidence=AK109819 (DDBJ%2C Best hit);ORF_evidence=B9GC83 (UniProt);InterPro=GDP-fucose protein O-fucosyltransferase (IPR019378),O-fucosyltransferase%2C plant (IPR024709);NIAS_FLcDNA=002-148-A04;Expression=AK109819;TENOR=Os12t0190100-01;KEGG=Os12t0190100-01
Chr12	irgsp1_rep	five_prime_UTR	4551091	4551105	.	+	.	Parent=Os12t0190100-01
Chr12	irgsp1_rep	CDS	4551106	4551294	.	+	0	Parent=Os12t0190100-01
Chr12	irgsp1_rep	CDS	4551700	4551778	.	+	0	Parent=Os12t0190100-01
Chr12	irgsp1_rep	CDS	4552588	4552655	.	+	2	Parent=Os12t0190100-01
Chr12	irgsp1_rep	CDS	4552938	4553026	.	+	0	Parent=Os12t0190100-01
Chr12	irgsp1_rep	CDS	4553123	4553300	.	+	1	Parent=Os12t0190100-01
Chr12	irgsp1_rep	CDS	4553825	4553951	.	+	0	Parent=Os12t0190100-01
Chr12	irgsp1_rep	CDS	4554081	4554216	.	+	2	Parent=Os12t0190100-01
Chr12	irgsp1_rep	CDS	4554294	4554507	.	+	1	Parent=Os12t0190100-01
Chr12	irgsp1_rep	CDS	4554588	4554772	.	+	0	Parent=Os12t0190100-01
Chr12	irgsp1_rep	CDS	4554917	4555012	.	+	1	Parent=Os12t0190100-01
Chr12	irgsp1_rep	CDS	4555092	4555218	.	+	1	Parent=Os12t0190100-01
Chr12	irgsp1_rep	three_prime_UTR	4555219	4555227	.	+	.	Parent=Os12t0190100-01
Chr12	irgsp1_rep	three_prime_UTR	4555780	4556193	.	+	.	Parent=Os12t0190100-01
Chr12	irgsp1_rep	mRNA	4556144	4558043	.	-	.	ID=Os12t0190200-01;Name=Os12t0190200-01;Locus_id=Os12g0190200;Note=Similar to Thylakoid lumenal 29.8 kDa protein%2C chloroplast precursor.;Transcript_evidence=AK060135 (DDBJ%2C Best hit);ORF_evidence=B6T2T9 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: oxygen evolving complex (GO:0009654),Cellular Component: extrinsic to membrane (GO:0019898),Molecular Function: calcium ion binding (GO:0005509);InterPro=Photosystem II PsbP%2C oxygen evolving complex (IPR002683),Mog1/PsbP%2C alpha/beta/alpha sandwich (IPR016123),Mog1/PsbP/DUF1795%2C alpha/beta/alpha sandwich (IPR016124);NIAS_FLcDNA=006-309-D07;Expression=AK060135;TENOR=Os12t0190200-01;KEGG=Os12t0190200-01
Chr12	irgsp1_rep	five_prime_UTR	4557949	4558043	.	-	.	Parent=Os12t0190200-01
Chr12	irgsp1_rep	CDS	4557630	4557948	.	-	0	Parent=Os12t0190200-01
Chr12	irgsp1_rep	CDS	4556968	4557071	.	-	2	Parent=Os12t0190200-01
Chr12	irgsp1_rep	CDS	4556762	4556870	.	-	0	Parent=Os12t0190200-01
Chr12	irgsp1_rep	CDS	4556436	4556660	.	-	2	Parent=Os12t0190200-01
Chr12	irgsp1_rep	CDS	4556287	4556351	.	-	2	Parent=Os12t0190200-01
Chr12	irgsp1_rep	three_prime_UTR	4556144	4556286	.	-	.	Parent=Os12t0190200-01
Chr12	irgsp1_rep	mRNA	4556191	4558033	.	-	.	ID=Os12t0190200-02;Name=Os12t0190200-02;Locus_id=Os12g0190200;Note=Similar to tat pathway signal sequence family protein.;Transcript_evidence=AK058893 (DDBJ%2C Best hit);ORF_evidence=Q2QWM7 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: oxygen evolving complex (GO:0009654),Cellular Component: extrinsic to membrane (GO:0019898),Molecular Function: calcium ion binding (GO:0005509);InterPro=Photosystem II PsbP%2C oxygen evolving complex (IPR002683),Mog1/PsbP%2C alpha/beta/alpha sandwich (IPR016123),Mog1/PsbP/DUF1795%2C alpha/beta/alpha sandwich (IPR016124);NIAS_FLcDNA=001-007-E10;Expression=AK058893;TENOR=Os12t0190200-02;KEGG=Os12t0190200-02
Chr12	irgsp1_rep	five_prime_UTR	4557639	4558033	.	-	.	Parent=Os12t0190200-02
Chr12	irgsp1_rep	CDS	4557630	4557638	.	-	0	Parent=Os12t0190200-02
Chr12	irgsp1_rep	CDS	4556968	4557075	.	-	0	Parent=Os12t0190200-02
Chr12	irgsp1_rep	CDS	4556762	4556870	.	-	0	Parent=Os12t0190200-02
Chr12	irgsp1_rep	CDS	4556436	4556660	.	-	2	Parent=Os12t0190200-02
Chr12	irgsp1_rep	CDS	4556287	4556351	.	-	2	Parent=Os12t0190200-02
Chr12	irgsp1_rep	three_prime_UTR	4556191	4556286	.	-	.	Parent=Os12t0190200-02
Chr12	irgsp1_rep	mRNA	4569135	4572169	.	-	.	ID=Os12t0190400-00;Name=Os12t0190400-00;Locus_id=Os12g0190400;Note=Similar to NifS-like protein.;Transcript_evidence=AK367175 (DDBJ);ORF_evidence=Q2QWM4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferase%2C class V/Cysteine desulfurase (IPR000192),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);TENOR=Os12t0190400-00
Chr12	irgsp1_rep	CDS	4571387	4572169	.	-	0	Parent=Os12t0190400-00
Chr12	irgsp1_rep	CDS	4569709	4569915	.	-	0	Parent=Os12t0190400-00
Chr12	irgsp1_rep	CDS	4569135	4569611	.	-	0	Parent=Os12t0190400-00
Chr12	irgsp1_rep	mRNA	4597787	4598615	.	+	.	ID=Os12t0190875-00;Name=Os12t0190875-00;Locus_id=Os12g0190875;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);InterPro=Ribonuclease H1%2C N-terminal (IPR011320);TENOR=Os12t0190875-00
Chr12	irgsp1_rep	five_prime_UTR	4597787	4597979	.	+	.	Parent=Os12t0190875-00
Chr12	irgsp1_rep	CDS	4597980	4598615	.	+	0	Parent=Os12t0190875-00
Chr12	irgsp1_rep	mRNA	4635104	4637093	.	-	.	ID=Os12t0191150-01;Name=Os12t0191150-01;Locus_id=Os12g0191150;Note=Similar to soluble inorganic pyrophosphatase.;Transcript_evidence=AK287441 (DDBJ%2C Best hit);ORF_evidence=NP_001104889.1 (RefSeq);GO=Biological Process: phosphate-containing compound metabolic process (GO:0006796),Cellular Component: cytoplasm (GO:0005737),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: inorganic diphosphatase activity (GO:0004427);InterPro=Inorganic pyrophosphatase (IPR008162);NIAS_FLcDNA=J043015F07;TENOR=Os12t0191150-01;KEGG=Os12t0191150-01
Chr12	irgsp1_rep	five_prime_UTR	4636595	4637093	.	-	.	Parent=Os12t0191150-01
Chr12	irgsp1_rep	CDS	4636525	4636594	.	-	0	Parent=Os12t0191150-01
Chr12	irgsp1_rep	CDS	4635367	4635386	.	-	2	Parent=Os12t0191150-01
Chr12	irgsp1_rep	three_prime_UTR	4635104	4635366	.	-	.	Parent=Os12t0191150-01
Chr12	irgsp1_rep	mRNA	4637268	4638407	.	-	.	ID=Os12t0191200-01;Name=Os12t0191200-01;Locus_id=Os12g0191200;Note=Hypothetical conserved gene.;Transcript_evidence=AK105986 (DDBJ%2C Best hit);ORF_evidence=B9GC87 (UniProt);NIAS_FLcDNA=001-205-G08;Expression=AK105986;TENOR=Os12t0191200-01;KEGG=Os12t0191200-01
Chr12	irgsp1_rep	five_prime_UTR	4638053	4638407	.	-	.	Parent=Os12t0191200-01
Chr12	irgsp1_rep	CDS	4637934	4638052	.	-	0	Parent=Os12t0191200-01
Chr12	irgsp1_rep	CDS	4637726	4637840	.	-	1	Parent=Os12t0191200-01
Chr12	irgsp1_rep	three_prime_UTR	4637268	4637725	.	-	.	Parent=Os12t0191200-01
Chr12	irgsp1_rep	mRNA	4642625	4644527	.	+	.	ID=Os12t0191300-00;Name=Os12t0191300-00;Locus_id=Os12g0191300;Note=Similar to Phage head-tail adaptor family protein%2C expressed.;Transcript_evidence=BT067332 (DDBJ);ORF_evidence=Q2QWM4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferase%2C class V/Cysteine desulfurase (IPR000192),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);TENOR=Os12t0191300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	4642625	4643427	.	+	0	Parent=Os12t0191300-00
Chr12	irgsp1_rep	CDS	4643521	4643701	.	+	1	Parent=Os12t0191300-00
Chr12	irgsp1_rep	CDS	4643802	4643816	.	+	0	Parent=Os12t0191300-00
Chr12	irgsp1_rep	three_prime_UTR	4643817	4644272	.	+	.	Parent=Os12t0191300-00
Chr12	irgsp1_rep	three_prime_UTR	4644369	4644527	.	+	.	Parent=Os12t0191300-00
Chr12	irgsp1_rep	mRNA	4653181	4654482	.	+	.	ID=Os12t0191400-00;Name=Os12t0191400-00;Locus_id=Os12g0191400;Note=Conserved hypothetical protein.;Transcript_evidence=BT085962 (DDBJ);ORF_evidence=NP_001183161.1 (RefSeq);TENOR=Os12t0191400-00
Chr12	irgsp1_rep	CDS	4653181	4654329	.	+	0	Parent=Os12t0191400-00
Chr12	irgsp1_rep	three_prime_UTR	4654330	4654482	.	+	.	Parent=Os12t0191400-00
Chr12	irgsp1_rep	mRNA	4653193	4654613	.	-	.	ID=Os12t0191500-01;Name=Os12t0191500-01;Locus_id=Os12g0191500;Oryzabase Gene Symbol Synonym(s)=prx137;Oryzabase Gene Name Synonym(s)=class III peroxidase 137;Note=Similar to Peroxidase 43 precursor (EC 1.11.1.7) (Atperox P43).;Transcript_evidence=AK061040 (DDBJ%2C Best hit);ORF_evidence=B9V0M3 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793);NIAS_FLcDNA=006-205-D01;Oryzabase=14651;Expression=AK061040;TENOR=Os12t0191500-01;KEGG=Os12t0191500-01 (EC:1.11.1.7)
Chr12	irgsp1_rep	five_prime_UTR	4654553	4654613	.	-	.	Parent=Os12t0191500-01
Chr12	irgsp1_rep	CDS	4654340	4654552	.	-	0	Parent=Os12t0191500-01
Chr12	irgsp1_rep	CDS	4654038	4654223	.	-	0	Parent=Os12t0191500-01
Chr12	irgsp1_rep	CDS	4653789	4653951	.	-	0	Parent=Os12t0191500-01
Chr12	irgsp1_rep	CDS	4653280	4653701	.	-	2	Parent=Os12t0191500-01
Chr12	irgsp1_rep	three_prime_UTR	4653193	4653279	.	-	.	Parent=Os12t0191500-01
Chr12	irgsp1_rep	mRNA	4656746	4656982	.	-	.	ID=Os12t0191601-00;Name=Os12t0191601-00;Locus_id=Os12g0191601;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001176829.1 (RefSeq);TENOR=Os12t0191601-00;KEGG=Os12t0191601-00
Chr12	irgsp1_rep	CDS	4656746	4656982	.	-	0	Parent=Os12t0191601-00
Chr12	irgsp1_rep	mRNA	4658298	4658659	.	-	.	ID=Os12t0191901-00;Name=Os12t0191901-00;Locus_id=Os12g0191901;Note=Hypothetical gene.;Transcript_evidence=CU406111 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os12t0191901-00;KEGG=Os12t0191901-00
Chr12	irgsp1_rep	CDS	4658387	4658659	.	-	0	Parent=Os12t0191901-00
Chr12	irgsp1_rep	three_prime_UTR	4658298	4658386	.	-	.	Parent=Os12t0191901-00
Chr12	irgsp1_rep	mRNA	4698412	4699458	.	-	.	ID=Os12t0192300-00;Name=Os12t0192300-00;Locus_id=Os12g0192300;Note=Similar to SNARE domain containing protein%2C expressed.;Transcript_evidence=AK364163 (DDBJ);ORF_evidence=Q2QWL1 (UniProt);GO=Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: membrane (GO:0016020),Molecular Function: protein binding (GO:0005515);InterPro=Target SNARE coiled-coil domain (IPR000727),t-SNARE (IPR010989);TENOR=Os12t0192300-00;KEGG=Os12t0192300-00
Chr12	irgsp1_rep	CDS	4698412	4699458	.	-	0	Parent=Os12t0192300-00
Chr12	irgsp1_rep	mRNA	4706847	4711325	.	+	.	ID=Os12t0192500-01;Name=Os12t0192500-01;Locus_id=Os12g0192500;Note=Similar to Phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase.;Transcript_evidence=AK100920 (DDBJ%2C Best hit);ORF_evidence=B6TMJ4 (UniProt);InterPro=Phosphomethylpyrimidine kinase type-1 (IPR013749);NIAS_FLcDNA=J023133M06;TENOR=Os12t0192500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	4706847	4706901	.	+	.	Parent=Os12t0192500-01
Chr12	irgsp1_rep	CDS	4706902	4707210	.	+	0	Parent=Os12t0192500-01
Chr12	irgsp1_rep	CDS	4707309	4707383	.	+	0	Parent=Os12t0192500-01
Chr12	irgsp1_rep	CDS	4708219	4708294	.	+	0	Parent=Os12t0192500-01
Chr12	irgsp1_rep	CDS	4708388	4708467	.	+	2	Parent=Os12t0192500-01
Chr12	irgsp1_rep	three_prime_UTR	4708568	4708702	.	+	.	Parent=Os12t0192500-01
Chr12	irgsp1_rep	three_prime_UTR	4709121	4709185	.	+	.	Parent=Os12t0192500-01
Chr12	irgsp1_rep	three_prime_UTR	4709282	4709409	.	+	.	Parent=Os12t0192500-01
Chr12	irgsp1_rep	three_prime_UTR	4710098	4710354	.	+	.	Parent=Os12t0192500-01
Chr12	irgsp1_rep	three_prime_UTR	4710447	4711325	.	+	.	Parent=Os12t0192500-01
Chr12	irgsp1_rep	mRNA	4706854	4711156	.	+	.	ID=Os12t0192500-02;Name=Os12t0192500-02;Locus_id=Os12g0192500;Note=Phosphomethylpyrimidine kinase type-1 domain containing protein.;Transcript_evidence=AK066087 (DDBJ%2C Best hit);ORF_evidence=B6TMJ4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: thiamine biosynthetic process (GO:0009228),Molecular Function: catalytic activity (GO:0003824),Molecular Function: thiamine-phosphate diphosphorylase activity (GO:0004789),Molecular Function: phosphomethylpyrimidine kinase activity (GO:0008972);InterPro=Thiamine monophosphate synthase (IPR003733),Phosphomethylpyrimidine kinase type-2 (IPR004399),Phosphomethylpyrimidine kinase type-1 (IPR013749),Aldolase-type TIM barrel (IPR013785),Thiamin phosphate synthase superfamily (IPR022998);NIAS_FLcDNA=J013050D15;Expression=AK066087;TENOR=Os12t0192500-02;KEGG=Os12t0192500-02
Chr12	irgsp1_rep	five_prime_UTR	4706854	4706901	.	+	.	Parent=Os12t0192500-02
Chr12	irgsp1_rep	CDS	4706902	4707210	.	+	0	Parent=Os12t0192500-02
Chr12	irgsp1_rep	CDS	4707309	4707383	.	+	0	Parent=Os12t0192500-02
Chr12	irgsp1_rep	CDS	4708219	4708294	.	+	0	Parent=Os12t0192500-02
Chr12	irgsp1_rep	CDS	4708392	4708467	.	+	2	Parent=Os12t0192500-02
Chr12	irgsp1_rep	CDS	4708568	4708702	.	+	1	Parent=Os12t0192500-02
Chr12	irgsp1_rep	CDS	4709121	4709185	.	+	1	Parent=Os12t0192500-02
Chr12	irgsp1_rep	CDS	4709282	4709409	.	+	2	Parent=Os12t0192500-02
Chr12	irgsp1_rep	CDS	4710098	4710354	.	+	0	Parent=Os12t0192500-02
Chr12	irgsp1_rep	CDS	4710447	4710972	.	+	1	Parent=Os12t0192500-02
Chr12	irgsp1_rep	three_prime_UTR	4710973	4711156	.	+	.	Parent=Os12t0192500-02
Chr12	irgsp1_rep	mRNA	4706928	4711229	.	+	.	ID=Os12t0192500-03;Name=Os12t0192500-03;Locus_id=Os12g0192500;Note=Similar to Phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase.;Transcript_evidence=AK122089 (DDBJ%2C Best hit);ORF_evidence=B6TMJ4 (UniProt);InterPro=Phosphomethylpyrimidine kinase type-1 (IPR013749);NIAS_FLcDNA=J033123K02;TENOR=Os12t0192500-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	4706928	4706928	.	+	.	Parent=Os12t0192500-03
Chr12	irgsp1_rep	CDS	4706929	4707210	.	+	0	Parent=Os12t0192500-03
Chr12	irgsp1_rep	CDS	4707309	4707383	.	+	0	Parent=Os12t0192500-03
Chr12	irgsp1_rep	CDS	4708219	4708294	.	+	0	Parent=Os12t0192500-03
Chr12	irgsp1_rep	CDS	4708388	4708467	.	+	2	Parent=Os12t0192500-03
Chr12	irgsp1_rep	three_prime_UTR	4708568	4708702	.	+	.	Parent=Os12t0192500-03
Chr12	irgsp1_rep	three_prime_UTR	4709121	4709185	.	+	.	Parent=Os12t0192500-03
Chr12	irgsp1_rep	three_prime_UTR	4709282	4709409	.	+	.	Parent=Os12t0192500-03
Chr12	irgsp1_rep	three_prime_UTR	4710098	4710354	.	+	.	Parent=Os12t0192500-03
Chr12	irgsp1_rep	three_prime_UTR	4710447	4711229	.	+	.	Parent=Os12t0192500-03
Chr12	irgsp1_rep	mRNA	4746627	4747579	.	+	.	ID=Os12t0193000-00;Name=Os12t0193000-00;Locus_id=Os12g0193000;CGSNL Gene Symbol=BRXL5.P;CGSNL Gene Name=BREVIS RADIX-LIKE 5 PSEUDOGENE;Oryzabase Gene Symbol Synonym(s)=OsBRXL5.P%2C OsBRXL5;Oryzabase Gene Name Synonym(s)=Brevis radix-like 5 pseudogene%2C BRX-like 5 pseudogene;Note=Hypothetical conserved gene.;Transcript_evidence=AK375134 (DDBJ);ORF_evidence=Q2QWK1 (UniProt);InterPro=Brevis radix-like domain (IPR013591);Oryzabase=8931;TENOR=Os12t0193000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	4746627	4746628	.	+	.	Parent=Os12t0193000-00
Chr12	irgsp1_rep	CDS	4746629	4747579	.	+	0	Parent=Os12t0193000-00
Chr12	irgsp1_rep	mRNA	4755480	4760834	.	-	.	ID=Os12t0193100-01;Name=Os12t0193100-01;Locus_id=Os12g0193100;Note=Similar to cDNA clone:J013157P20%2C full insert sequence.;Transcript_evidence=AK068584 (DDBJ%2C Best hit);ORF_evidence=B6TE01 (UniProt);NIAS_FLcDNA=J013157P20;Expression=AK068584;TENOR=Os12t0193100-01;KEGG=Os12t0193100-01
Chr12	irgsp1_rep	five_prime_UTR	4760583	4760834	.	-	.	Parent=Os12t0193100-01
Chr12	irgsp1_rep	five_prime_UTR	4758710	4758720	.	-	.	Parent=Os12t0193100-01
Chr12	irgsp1_rep	CDS	4758078	4758709	.	-	0	Parent=Os12t0193100-01
Chr12	irgsp1_rep	CDS	4757843	4757988	.	-	1	Parent=Os12t0193100-01
Chr12	irgsp1_rep	CDS	4756118	4756197	.	-	2	Parent=Os12t0193100-01
Chr12	irgsp1_rep	CDS	4755938	4756021	.	-	0	Parent=Os12t0193100-01
Chr12	irgsp1_rep	three_prime_UTR	4755480	4755937	.	-	.	Parent=Os12t0193100-01
Chr12	irgsp1_rep	mRNA	4755625	4760787	.	-	.	ID=Os12t0193100-02;Name=Os12t0193100-02;Locus_id=Os12g0193100;Note=Similar to cDNA clone:J013157P20%2C full insert sequence.;Transcript_evidence=AK072237 (DDBJ%2C Best hit);ORF_evidence=B6TE01 (UniProt);NIAS_FLcDNA=J023002H11;Expression=AK072237;TENOR=Os12t0193100-02;KEGG=Os12t0193100-02
Chr12	irgsp1_rep	five_prime_UTR	4760583	4760787	.	-	.	Parent=Os12t0193100-02
Chr12	irgsp1_rep	five_prime_UTR	4758710	4758720	.	-	.	Parent=Os12t0193100-02
Chr12	irgsp1_rep	CDS	4758078	4758709	.	-	0	Parent=Os12t0193100-02
Chr12	irgsp1_rep	CDS	4757843	4757988	.	-	1	Parent=Os12t0193100-02
Chr12	irgsp1_rep	CDS	4756118	4756197	.	-	2	Parent=Os12t0193100-02
Chr12	irgsp1_rep	CDS	4755938	4756021	.	-	0	Parent=Os12t0193100-02
Chr12	irgsp1_rep	three_prime_UTR	4755625	4755937	.	-	.	Parent=Os12t0193100-02
Chr12	irgsp1_rep	mRNA	4749643	4760787	.	-	.	ID=Os12t0193100-03;Name=Os12t0193100-03;Locus_id=Os12g0193100;Note=Similar to cDNA clone:J013157P20%2C full insert sequence.;Transcript_evidence=AK099037 (DDBJ%2C Best hit);ORF_evidence=B6TE01 (UniProt);NIAS_FLcDNA=J013132N07;Expression=AK099037;TENOR=Os12t0193100-03;KEGG=Os12t0193100-03
Chr12	irgsp1_rep	five_prime_UTR	4760583	4760787	.	-	.	Parent=Os12t0193100-03
Chr12	irgsp1_rep	five_prime_UTR	4758710	4758720	.	-	.	Parent=Os12t0193100-03
Chr12	irgsp1_rep	CDS	4758078	4758709	.	-	0	Parent=Os12t0193100-03
Chr12	irgsp1_rep	CDS	4757843	4757988	.	-	1	Parent=Os12t0193100-03
Chr12	irgsp1_rep	CDS	4756118	4756197	.	-	2	Parent=Os12t0193100-03
Chr12	irgsp1_rep	CDS	4755938	4756021	.	-	0	Parent=Os12t0193100-03
Chr12	irgsp1_rep	three_prime_UTR	4753482	4755937	.	-	.	Parent=Os12t0193100-03
Chr12	irgsp1_rep	three_prime_UTR	4749643	4750416	.	-	.	Parent=Os12t0193100-03
Chr12	irgsp1_rep	mRNA	4748030	4760700	.	-	.	ID=Os12t0193100-04;Name=Os12t0193100-04;Locus_id=Os12g0193100;Note=Similar to cDNA clone:J013157P20%2C full insert sequence.;Transcript_evidence=AK101295 (DDBJ%2C Best hit);ORF_evidence=B6TE01 (UniProt);NIAS_FLcDNA=J033033H14;TENOR=Os12t0193100-04;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	4760583	4760700	.	-	.	Parent=Os12t0193100-04
Chr12	irgsp1_rep	five_prime_UTR	4758710	4758720	.	-	.	Parent=Os12t0193100-04
Chr12	irgsp1_rep	CDS	4758078	4758709	.	-	0	Parent=Os12t0193100-04
Chr12	irgsp1_rep	CDS	4757843	4757988	.	-	1	Parent=Os12t0193100-04
Chr12	irgsp1_rep	CDS	4756118	4756197	.	-	2	Parent=Os12t0193100-04
Chr12	irgsp1_rep	CDS	4755938	4756021	.	-	0	Parent=Os12t0193100-04
Chr12	irgsp1_rep	three_prime_UTR	4755916	4755937	.	-	.	Parent=Os12t0193100-04
Chr12	irgsp1_rep	three_prime_UTR	4748030	4748525	.	-	.	Parent=Os12t0193100-04
Chr12	irgsp1_rep	mRNA	4763206	4775463	.	-	.	ID=Os12t0193200-01;Name=Os12t0193200-01;Locus_id=Os12g0193200;Oryzabase Gene Symbol Synonym(s)=OsPP128;Oryzabase Gene Name Synonym(s)=Protein phosphatase 128;Note=Nucleic acid-binding%2C OB-fold domain containing protein.;Transcript_evidence=AK100343 (DDBJ%2C Best hit);ORF_evidence=Q2QWJ6 (UniProt);GO=Biological Process: mRNA capping (GO:0006370),Biological Process: mRNA processing (GO:0006397),Biological Process: protein dephosphorylation (GO:0006470),Biological Process: dephosphorylation (GO:0016311),Cellular Component: nucleus (GO:0005634),Molecular Function: mRNA guanylyltransferase activity (GO:0004484),Molecular Function: polynucleotide 5'-phosphatase activity (GO:0004651),Molecular Function: protein tyrosine phosphatase activity (GO:0004725),Molecular Function: protein tyrosine/serine/threonine phosphatase activity (GO:0008138),Molecular Function: phosphatase activity (GO:0016791);InterPro=Dual specificity phosphatase%2C catalytic domain (IPR000340),Protein-tyrosine/Dual-specificity phosphatase (IPR000387),mRNA capping enzyme (IPR001339),Nucleic acid-binding%2C OB-fold (IPR012340),mRNA capping enzyme%2C C-terminal (IPR013846),Nucleic acid-binding%2C OB-fold-like (IPR016027),Protein-tyrosine phosphatase%2C active site (IPR016130),mRNA capping enzyme%2C bifunctional (IPR017074),Dual specificity phosphatase%2C subgroup%2C catalytic domain (IPR020422);NIAS_FLcDNA=J023082E18;Oryzabase=18664;Expression=AK100343;TENOR=Os12t0193200-01;KEGG=Os12t0193200-01
Chr12	irgsp1_rep	five_prime_UTR	4775177	4775463	.	-	.	Parent=Os12t0193200-01
Chr12	irgsp1_rep	five_prime_UTR	4773915	4773949	.	-	.	Parent=Os12t0193200-01
Chr12	irgsp1_rep	CDS	4773804	4773914	.	-	0	Parent=Os12t0193200-01
Chr12	irgsp1_rep	CDS	4773209	4773347	.	-	0	Parent=Os12t0193200-01
Chr12	irgsp1_rep	CDS	4772923	4773074	.	-	2	Parent=Os12t0193200-01
Chr12	irgsp1_rep	CDS	4772348	4772431	.	-	0	Parent=Os12t0193200-01
Chr12	irgsp1_rep	CDS	4772202	4772264	.	-	0	Parent=Os12t0193200-01
Chr12	irgsp1_rep	CDS	4770753	4770890	.	-	0	Parent=Os12t0193200-01
Chr12	irgsp1_rep	CDS	4770467	4770673	.	-	0	Parent=Os12t0193200-01
Chr12	irgsp1_rep	CDS	4768816	4768932	.	-	0	Parent=Os12t0193200-01
Chr12	irgsp1_rep	CDS	4768297	4768346	.	-	0	Parent=Os12t0193200-01
Chr12	irgsp1_rep	CDS	4767233	4767395	.	-	1	Parent=Os12t0193200-01
Chr12	irgsp1_rep	CDS	4767022	4767144	.	-	0	Parent=Os12t0193200-01
Chr12	irgsp1_rep	CDS	4766227	4766334	.	-	0	Parent=Os12t0193200-01
Chr12	irgsp1_rep	CDS	4766038	4766136	.	-	0	Parent=Os12t0193200-01
Chr12	irgsp1_rep	CDS	4764976	4765065	.	-	0	Parent=Os12t0193200-01
Chr12	irgsp1_rep	CDS	4764807	4764891	.	-	0	Parent=Os12t0193200-01
Chr12	irgsp1_rep	CDS	4764173	4764304	.	-	2	Parent=Os12t0193200-01
Chr12	irgsp1_rep	CDS	4763466	4763602	.	-	2	Parent=Os12t0193200-01
Chr12	irgsp1_rep	three_prime_UTR	4763206	4763465	.	-	.	Parent=Os12t0193200-01
Chr12	irgsp1_rep	mRNA	4796480	4799955	.	+	.	ID=Os12t0193800-01;Name=Os12t0193800-01;Locus_id=Os12g0193800;Note=Conserved hypothetical protein.;Transcript_evidence=AK111754 (DDBJ%2C Best hit);ORF_evidence=A2ZIU5 (UniProt);NIAS_FLcDNA=J023056F18;TENOR=Os12t0193800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	4796480	4796609	.	+	.	Parent=Os12t0193800-01
Chr12	irgsp1_rep	CDS	4796610	4797089	.	+	0	Parent=Os12t0193800-01
Chr12	irgsp1_rep	three_prime_UTR	4797090	4798466	.	+	.	Parent=Os12t0193800-01
Chr12	irgsp1_rep	three_prime_UTR	4798565	4798817	.	+	.	Parent=Os12t0193800-01
Chr12	irgsp1_rep	three_prime_UTR	4798979	4799102	.	+	.	Parent=Os12t0193800-01
Chr12	irgsp1_rep	three_prime_UTR	4799532	4799955	.	+	.	Parent=Os12t0193800-01
Chr12	irgsp1_rep	mRNA	4814539	4818499	.	-	.	ID=Os12t0194100-01;Name=Os12t0194100-01;Locus_id=Os12g0194100;Note=Conserved hypothetical protein.;Transcript_evidence=AK108603 (DDBJ%2C Best hit);ORF_evidence=B9GC97 (UniProt);NIAS_FLcDNA=002-146-F09;TENOR=Os12t0194100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	4817894	4818499	.	-	.	Parent=Os12t0194100-01
Chr12	irgsp1_rep	five_prime_UTR	4817714	4817804	.	-	.	Parent=Os12t0194100-01
Chr12	irgsp1_rep	CDS	4817692	4817713	.	-	0	Parent=Os12t0194100-01
Chr12	irgsp1_rep	CDS	4816468	4816547	.	-	2	Parent=Os12t0194100-01
Chr12	irgsp1_rep	CDS	4816166	4816366	.	-	0	Parent=Os12t0194100-01
Chr12	irgsp1_rep	CDS	4815775	4815862	.	-	0	Parent=Os12t0194100-01
Chr12	irgsp1_rep	CDS	4814754	4815391	.	-	2	Parent=Os12t0194100-01
Chr12	irgsp1_rep	three_prime_UTR	4814539	4814753	.	-	.	Parent=Os12t0194100-01
Chr12	irgsp1_rep	mRNA	4818369	4822111	.	+	.	ID=Os12t0194266-00;Name=Os12t0194266-00;Locus_id=Os12g0194266;Note=Hypothetical protein.;Transcript_evidence=tplb0034a10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0194266-00
Chr12	irgsp1_rep	five_prime_UTR	4818369	4818563	.	+	.	Parent=Os12t0194266-00
Chr12	irgsp1_rep	CDS	4818564	4818598	.	+	0	Parent=Os12t0194266-00
Chr12	irgsp1_rep	CDS	4818779	4819343	.	+	1	Parent=Os12t0194266-00
Chr12	irgsp1_rep	three_prime_UTR	4819344	4820199	.	+	.	Parent=Os12t0194266-00
Chr12	irgsp1_rep	three_prime_UTR	4821412	4822111	.	+	.	Parent=Os12t0194266-00
Chr12	irgsp1_rep	mRNA	4837942	4841259	.	+	.	ID=Os12t0194432-00;Name=Os12t0194432-00;Locus_id=Os12g0194432;Note=Non-protein coding transcript.;Transcript_evidence=tplb0061j05 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os12t0194432-00
Chr12	irgsp1_rep	exon	4837942	4838868	.	+	.	Parent=Os12t0194432-00
Chr12	irgsp1_rep	exon	4839915	4840110	.	+	.	Parent=Os12t0194432-00
Chr12	irgsp1_rep	exon	4841001	4841259	.	+	.	Parent=Os12t0194432-00
Chr12	irgsp1_rep	mRNA	4848847	4859750	.	+	.	ID=Os12t0194600-01;Name=Os12t0194600-01;Locus_id=Os12g0194600;CGSNL Gene Symbol=BZIP85;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 85;Oryzabase Gene Symbol Synonym(s)=OsbZIP85;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 85;Note=Similar to DNA binding protein.;Transcript_evidence=AK287555 (DDBJ%2C Best hit);ORF_evidence=NP_001147456.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);NIAS_FLcDNA=J065019F14;Oryzabase=10164;TENOR=Os12t0194600-01;KEGG=Os12t0194600-01
Chr12	irgsp1_rep	five_prime_UTR	4848847	4849453	.	+	.	Parent=Os12t0194600-01
Chr12	irgsp1_rep	CDS	4849454	4850154	.	+	0	Parent=Os12t0194600-01
Chr12	irgsp1_rep	CDS	4857969	4858044	.	+	1	Parent=Os12t0194600-01
Chr12	irgsp1_rep	CDS	4858136	4858262	.	+	0	Parent=Os12t0194600-01
Chr12	irgsp1_rep	CDS	4858922	4859127	.	+	2	Parent=Os12t0194600-01
Chr12	irgsp1_rep	three_prime_UTR	4859128	4859750	.	+	.	Parent=Os12t0194600-01
Chr12	irgsp1_rep	mRNA	4849357	4859749	.	+	.	ID=Os12t0194600-02;Name=Os12t0194600-02;Locus_id=Os12g0194600;CGSNL Gene Symbol=BZIP85;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 85;Oryzabase Gene Symbol Synonym(s)=OsbZIP85;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 85;Note=Similar to DNA binding protein.;Transcript_evidence=AK287716 (DDBJ%2C Best hit);ORF_evidence=NP_001147456.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);NIAS_FLcDNA=J065134G21;Oryzabase=10164;TENOR=Os12t0194600-02;KEGG=Os12t0194600-02
Chr12	irgsp1_rep	five_prime_UTR	4849357	4849453	.	+	.	Parent=Os12t0194600-02
Chr12	irgsp1_rep	CDS	4849454	4850154	.	+	0	Parent=Os12t0194600-02
Chr12	irgsp1_rep	CDS	4857969	4858044	.	+	1	Parent=Os12t0194600-02
Chr12	irgsp1_rep	CDS	4858136	4858262	.	+	0	Parent=Os12t0194600-02
Chr12	irgsp1_rep	CDS	4858922	4859127	.	+	2	Parent=Os12t0194600-02
Chr12	irgsp1_rep	three_prime_UTR	4859128	4859749	.	+	.	Parent=Os12t0194600-02
Chr12	irgsp1_rep	mRNA	4860236	4863105	.	-	.	ID=Os12t0194700-01;Name=Os12t0194700-01;Locus_id=Os12g0194700;Note=DNA-directed RNA polymerase%2C RBP11-like domain containing protein.;Transcript_evidence=AK121912 (DDBJ%2C Best hit);ORF_evidence=B2BXR4 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899);InterPro=DNA-directed RNA polymerase Rpb11%2C 13-16kDa subunit%2C conserved site (IPR008193),DNA-directed RNA polymerase%2C RBP11-like (IPR009025);NIAS_FLcDNA=J033106A07;Expression=AK121912;TENOR=Os12t0194700-01;KEGG=Os12t0194700-01 (EC:2.7.7.6)
Chr12	irgsp1_rep	five_prime_UTR	4863062	4863105	.	-	.	Parent=Os12t0194700-01
Chr12	irgsp1_rep	five_prime_UTR	4862917	4862932	.	-	.	Parent=Os12t0194700-01
Chr12	irgsp1_rep	CDS	4862816	4862916	.	-	0	Parent=Os12t0194700-01
Chr12	irgsp1_rep	CDS	4861104	4861180	.	-	1	Parent=Os12t0194700-01
Chr12	irgsp1_rep	CDS	4860483	4860631	.	-	2	Parent=Os12t0194700-01
Chr12	irgsp1_rep	three_prime_UTR	4860236	4860482	.	-	.	Parent=Os12t0194700-01
Chr12	irgsp1_rep	mRNA	4863276	4874888	.	+	.	ID=Os12t0194800-01;Name=Os12t0194800-01;Locus_id=Os12g0194800;Note=tRNA pseudouridine synthase family protein.;Transcript_evidence=AK101810 (DDBJ%2C Best hit);ORF_evidence=B8BNJ9 (UniProt);GO=Biological Process: pseudouridine synthesis (GO:0001522),Biological Process: RNA modification (GO:0009451),Molecular Function: RNA binding (GO:0003723),Molecular Function: pseudouridine synthase activity (GO:0009982);InterPro=Pseudouridine synthase I%2C TruA (IPR001406),Pseudouridine synthase I%2C TruA%2C N-terminal (IPR020094),Pseudouridine synthase I%2C TruA%2C C-terminal (IPR020095),Pseudouridine synthase I%2C TruA%2C alpha/beta domain (IPR020097),Pseudouridine synthase%2C catalytic domain (IPR020103);NIAS_FLcDNA=J033066M17;Expression=AK101810;TENOR=Os12t0194800-01;KEGG=Os12t0194800-01 (EC:5.4.99.12)
Chr12	irgsp1_rep	five_prime_UTR	4863276	4863317	.	+	.	Parent=Os12t0194800-01
Chr12	irgsp1_rep	CDS	4863318	4863620	.	+	0	Parent=Os12t0194800-01
Chr12	irgsp1_rep	CDS	4870086	4870142	.	+	0	Parent=Os12t0194800-01
Chr12	irgsp1_rep	CDS	4870615	4870692	.	+	0	Parent=Os12t0194800-01
Chr12	irgsp1_rep	CDS	4871164	4871214	.	+	0	Parent=Os12t0194800-01
Chr12	irgsp1_rep	CDS	4871455	4871540	.	+	0	Parent=Os12t0194800-01
Chr12	irgsp1_rep	CDS	4871766	4871865	.	+	1	Parent=Os12t0194800-01
Chr12	irgsp1_rep	CDS	4871939	4872001	.	+	0	Parent=Os12t0194800-01
Chr12	irgsp1_rep	CDS	4872375	4872650	.	+	0	Parent=Os12t0194800-01
Chr12	irgsp1_rep	CDS	4873189	4873249	.	+	0	Parent=Os12t0194800-01
Chr12	irgsp1_rep	CDS	4873356	4873456	.	+	2	Parent=Os12t0194800-01
Chr12	irgsp1_rep	three_prime_UTR	4873457	4873507	.	+	.	Parent=Os12t0194800-01
Chr12	irgsp1_rep	three_prime_UTR	4874479	4874888	.	+	.	Parent=Os12t0194800-01
Chr12	irgsp1_rep	mRNA	4863276	4863820	.	+	.	ID=Os12t0194800-02;Name=Os12t0194800-02;Locus_id=Os12g0194800;Note=Similar to Pseudouridylate synthase.;Transcript_evidence=AK107780 (DDBJ%2C Best hit);ORF_evidence=B8BNJ9 (UniProt);GO=Biological Process: pseudouridine synthesis (GO:0001522),Biological Process: RNA modification (GO:0009451),Molecular Function: RNA binding (GO:0003723),Molecular Function: pseudouridine synthase activity (GO:0009982);InterPro=Pseudouridine synthase I%2C TruA%2C N-terminal (IPR020094);NIAS_FLcDNA=002-133-C06;Expression=AK107780;TENOR=Os12t0194800-02;KEGG=Os12t0194800-02 (EC:5.4.99.12)
Chr12	irgsp1_rep	five_prime_UTR	4863276	4863317	.	+	.	Parent=Os12t0194800-02
Chr12	irgsp1_rep	CDS	4863318	4863635	.	+	0	Parent=Os12t0194800-02
Chr12	irgsp1_rep	three_prime_UTR	4863636	4863820	.	+	.	Parent=Os12t0194800-02
Chr12	irgsp1_rep	mRNA	4881038	4884876	.	+	.	ID=Os12t0194900-01;Name=Os12t0194900-01;Locus_id=Os12g0194900;CGSNL Gene Symbol=AAP10B;CGSNL Gene Name=AMINO ACID PERMEASE 10B;Oryzabase Gene Symbol Synonym(s)=OsAAP10B%2C OsAAP4%2C AAP4;Oryzabase Gene Name Synonym(s)=amino acid permease 10B%2C amino acid permease 4%2C amino acid/auxin permease 4;Note=Similar to Amino acid carrier (Fragment).;Transcript_evidence=AK069508 (DDBJ%2C Best hit);ORF_evidence=NP_001147944.1 (RefSeq);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=J023020L23;Oryzabase=18489;Expression=AK069508;TENOR=Os12t0194900-01;KEGG=Os12t0194900-01
Chr12	irgsp1_rep	five_prime_UTR	4881038	4881124	.	+	.	Parent=Os12t0194900-01
Chr12	irgsp1_rep	CDS	4881125	4881182	.	+	0	Parent=Os12t0194900-01
Chr12	irgsp1_rep	CDS	4881752	4881985	.	+	2	Parent=Os12t0194900-01
Chr12	irgsp1_rep	CDS	4882106	4882199	.	+	2	Parent=Os12t0194900-01
Chr12	irgsp1_rep	CDS	4883451	4884033	.	+	1	Parent=Os12t0194900-01
Chr12	irgsp1_rep	CDS	4884116	4884553	.	+	0	Parent=Os12t0194900-01
Chr12	irgsp1_rep	three_prime_UTR	4884554	4884876	.	+	.	Parent=Os12t0194900-01
Chr12	irgsp1_rep	mRNA	4881748	4884539	.	-	.	ID=Os12t0194950-00;Name=Os12t0194950-00;Locus_id=Os12g0194950;Note=Hypothetical protein.;Transcript_evidence=tplb0036o08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0194950-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	4884196	4884539	.	-	.	Parent=Os12t0194950-00
Chr12	irgsp1_rep	five_prime_UTR	4884049	4884091	.	-	.	Parent=Os12t0194950-00
Chr12	irgsp1_rep	CDS	4883434	4884048	.	-	0	Parent=Os12t0194950-00
Chr12	irgsp1_rep	three_prime_UTR	4883346	4883433	.	-	.	Parent=Os12t0194950-00
Chr12	irgsp1_rep	three_prime_UTR	4881748	4881977	.	-	.	Parent=Os12t0194950-00
Chr12	irgsp1_rep	mRNA	4893127	4894709	.	-	.	ID=Os12t0195100-00;Name=Os12t0195100-00;Locus_id=Os12g0195100;CGSNL Gene Symbol=AAP11D;CGSNL Gene Name=AMINO ACID PERMEASE 11D;Oryzabase Gene Symbol Synonym(s)=OsAAP11D%2C OsAAP12%2C AAP12;Oryzabase Gene Name Synonym(s)=amino acid permease 11D%2C amino acid permease 12%2C amino acid/auxin permease 12;Note=Similar to amino acid permease.;Transcript_evidence=EU962989 (DDBJ);ORF_evidence=O82044 (UniProt);InterPro=Amino acid transporter%2C transmembrane (IPR013057);Oryzabase=18496;TENOR=Os12t0195100-00;KEGG=Os12t0195100-00
Chr12	irgsp1_rep	CDS	4894203	4894709	.	-	0	Parent=Os12t0195100-00
Chr12	irgsp1_rep	CDS	4893137	4894120	.	-	0	Parent=Os12t0195100-00
Chr12	irgsp1_rep	three_prime_UTR	4893127	4893136	.	-	.	Parent=Os12t0195100-00
Chr12	irgsp1_rep	mRNA	4893135	4894550	.	+	.	ID=Os12t0195183-00;Name=Os12t0195183-00;Locus_id=Os12g0195183;Note=Hypothetical protein.;Transcript_evidence=tplb0036o08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0195183-00
Chr12	irgsp1_rep	five_prime_UTR	4893135	4893136	.	+	.	Parent=Os12t0195183-00
Chr12	irgsp1_rep	CDS	4893137	4894516	.	+	0	Parent=Os12t0195183-00
Chr12	irgsp1_rep	three_prime_UTR	4894517	4894550	.	+	.	Parent=Os12t0195183-00
Chr12	irgsp1_rep	mRNA	4953150	4954757	.	-	.	ID=Os12t0196300-01;Name=Os12t0196300-01;Locus_id=Os12g0196300;Note=Similar to Class III peroxidase 2.;Transcript_evidence=AK107026 (DDBJ%2C Best hit);ORF_evidence=Q5U1U1 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255);NIAS_FLcDNA=002-121-A07;TENOR=Os12t0196300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	4954526	4954757	.	-	.	Parent=Os12t0196300-01
Chr12	irgsp1_rep	CDS	4954208	4954525	.	-	0	Parent=Os12t0196300-01
Chr12	irgsp1_rep	three_prime_UTR	4953150	4954207	.	-	.	Parent=Os12t0196300-01
Chr12	irgsp1_rep	mRNA	5013789	5018308	.	-	.	ID=Os12t0197100-01;Name=Os12t0197100-01;Locus_id=Os12g0197100;Oryzabase Gene Symbol Synonym(s)=OsPRAGL;Oryzabase Gene Name Synonym(s)=phosphoribosylamine-glycine ligase;Note=Pre-ATP-grasp fold domain containing protein.;Transcript_evidence=AK071816 (DDBJ%2C Best hit);ORF_evidence=NP_001147908.1 (RefSeq);GO=Biological Process: purine base biosynthetic process (GO:0009113),Molecular Function: catalytic activity (GO:0003824),Molecular Function: phosphoribosylamine-glycine ligase activity (GO:0004637),Molecular Function: ATP binding (GO:0005524),Molecular Function: ligase activity (GO:0016874),Molecular Function: metal ion binding (GO:0046872);InterPro=Phosphoribosylglycinamide synthetase (IPR000115),Rudiment single hybrid motif (IPR011054),ATP-grasp fold (IPR011761),ATP-grasp fold%2C subdomain 1 (IPR013815),ATP-grasp fold%2C subdomain 2 (IPR013816),Pre-ATP-grasp fold (IPR013817),PreATP-grasp-like fold (IPR016185),Phosphoribosylglycinamide synthetase%2C conserved site (IPR020559),Phosphoribosylglycinamide synthetase%2C C-domain (IPR020560),Phosphoribosylglycinamide synthetase%2C ATP-grasp (A) domain (IPR020561),Phosphoribosylglycinamide synthetase%2C N-terminal (IPR020562);NIAS_FLcDNA=J023114O15;Oryzabase=12484;Expression=AK071816;TENOR=Os12t0197100-01;KEGG=Os12t0197100-01
Chr12	irgsp1_rep	five_prime_UTR	5018234	5018308	.	-	.	Parent=Os12t0197100-01
Chr12	irgsp1_rep	five_prime_UTR	5017617	5017627	.	-	.	Parent=Os12t0197100-01
Chr12	irgsp1_rep	CDS	5017379	5017616	.	-	0	Parent=Os12t0197100-01
Chr12	irgsp1_rep	CDS	5016622	5016995	.	-	2	Parent=Os12t0197100-01
Chr12	irgsp1_rep	CDS	5015688	5016218	.	-	0	Parent=Os12t0197100-01
Chr12	irgsp1_rep	CDS	5014066	5014479	.	-	0	Parent=Os12t0197100-01
Chr12	irgsp1_rep	three_prime_UTR	5013789	5014065	.	-	.	Parent=Os12t0197100-01
Chr12	irgsp1_rep	mRNA	5014092	5014483	.	+	.	ID=Os12t0197150-00;Name=Os12t0197150-00;Locus_id=Os12g0197150;Note=Non-protein coding transcript.;Transcript_evidence=BT016971 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0197150-00
Chr12	irgsp1_rep	exon	5014092	5014483	.	+	.	Parent=Os12t0197150-00
Chr12	irgsp1_rep	mRNA	5020950	5028366	.	+	.	ID=Os12t0197200-01;Name=Os12t0197200-01;Locus_id=Os12g0197200;Note=Conserved hypothetical protein.;Transcript_evidence=AK121465 (DDBJ%2C Best hit);ORF_evidence=Q6K3M5 (UniProt);NIAS_FLcDNA=J023145L11;Expression=AK121465;TENOR=Os12t0197200-01;KEGG=Os12t0197200-01
Chr12	irgsp1_rep	five_prime_UTR	5020950	5021381	.	+	.	Parent=Os12t0197200-01
Chr12	irgsp1_rep	five_prime_UTR	5023056	5023273	.	+	.	Parent=Os12t0197200-01
Chr12	irgsp1_rep	CDS	5023274	5023510	.	+	0	Parent=Os12t0197200-01
Chr12	irgsp1_rep	three_prime_UTR	5023511	5028010	.	+	.	Parent=Os12t0197200-01
Chr12	irgsp1_rep	three_prime_UTR	5028075	5028366	.	+	.	Parent=Os12t0197200-01
Chr12	irgsp1_rep	mRNA	5021126	5024014	.	+	.	ID=Os12t0197200-02;Name=Os12t0197200-02;Locus_id=Os12g0197200;Note=Conserved hypothetical protein.;Transcript_evidence=AK063668 (DDBJ%2C Best hit);ORF_evidence=Q2QWF2 (UniProt);NIAS_FLcDNA=001-119-D03;TENOR=Os12t0197200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	5021126	5021381	.	+	.	Parent=Os12t0197200-02
Chr12	irgsp1_rep	five_prime_UTR	5023056	5023418	.	+	.	Parent=Os12t0197200-02
Chr12	irgsp1_rep	CDS	5023419	5023736	.	+	0	Parent=Os12t0197200-02
Chr12	irgsp1_rep	three_prime_UTR	5023737	5024014	.	+	.	Parent=Os12t0197200-02
Chr12	irgsp1_rep	mRNA	5030805	5034424	.	+	.	ID=Os12t0197400-01;Name=Os12t0197400-01;Locus_id=Os12g0197400;Note=Similar to chloroplast outer envelope protein 86.;Transcript_evidence=AK241335 (DDBJ%2C Best hit);ORF_evidence=NP_001147969.1 (RefSeq);GO=Molecular Function: GTP binding (GO:0005525);InterPro=AIG1 (IPR006703),Domain of unknown function DUF3406%2C chloroplast translocase (IPR024283);NIAS_FLcDNA=J065144J23;TENOR=Os12t0197400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	5030805	5030948	.	+	.	Parent=Os12t0197400-01
Chr12	irgsp1_rep	five_prime_UTR	5031088	5031110	.	+	.	Parent=Os12t0197400-01
Chr12	irgsp1_rep	CDS	5031111	5031237	.	+	0	Parent=Os12t0197400-01
Chr12	irgsp1_rep	CDS	5031947	5034183	.	+	2	Parent=Os12t0197400-01
Chr12	irgsp1_rep	three_prime_UTR	5034184	5034424	.	+	.	Parent=Os12t0197400-01
Chr12	irgsp1_rep	mRNA	5035198	5040887	.	-	.	ID=Os12t0197500-01;Name=Os12t0197500-01;Locus_id=Os12g0197500;RAP-DB Gene Symbol Synonym(s)=OsSGS3;RAP-DB Gene Name Synonym(s)=suppressor of gene silencing 3;Oryzabase Gene Symbol Synonym(s)=OsSGS3;Oryzabase Gene Name Synonym(s)=suppressor of gene silencing 3;Note=Homolog of Arabidopsis suppressor of gene silencing 3%2C Cofactor of RNA-dependent RNA polymerase%2C Defense response to virus;Transcript_evidence=AK064995;ORF_evidence=Q2QWE9;GO=Biological Process: gene silencing by RNA (GO:0031047);InterPro=Zinc finger-XS domain (IPR005381),XS domain (IPR005380);NIAS_FLcDNA=J013001D20;Manual Curation=June 5%2C 2017;Literature_PMID=21726383;Oryzabase=12550;Expression=AK064995;TENOR=Os12t0197500-01;KEGG=Os12t0197500-01
Chr12	irgsp1_rep	five_prime_UTR	5040814	5040887	.	-	.	Parent=Os12t0197500-01
Chr12	irgsp1_rep	CDS	5040753	5040813	.	-	0	Parent=Os12t0197500-01
Chr12	irgsp1_rep	CDS	5038634	5039472	.	-	2	Parent=Os12t0197500-01
Chr12	irgsp1_rep	CDS	5037676	5037973	.	-	0	Parent=Os12t0197500-01
Chr12	irgsp1_rep	CDS	5036221	5036465	.	-	2	Parent=Os12t0197500-01
Chr12	irgsp1_rep	CDS	5035853	5036010	.	-	0	Parent=Os12t0197500-01
Chr12	irgsp1_rep	CDS	5035471	5035699	.	-	1	Parent=Os12t0197500-01
Chr12	irgsp1_rep	three_prime_UTR	5035198	5035470	.	-	.	Parent=Os12t0197500-01
Chr12	irgsp1_rep	mRNA	5035974	5040878	.	-	.	ID=Os12t0197500-02;Name=Os12t0197500-02;Locus_id=Os12g0197500;Oryzabase Gene Symbol Synonym(s)=OsSGS3;Oryzabase Gene Name Synonym(s)=suppressor of gene silencing 3;Note=Similar to Protein SUPPRESSOR OF GENE SILENCING 3 homolog.;Transcript_evidence=AK064217 (DDBJ%2C Best hit);ORF_evidence=Q2QWE9 (UniProt);InterPro=XS domain (IPR005380),Zinc finger-XS domain (IPR005381);NIAS_FLcDNA=002-104-F07;Oryzabase=12550;TENOR=Os12t0197500-02
Chr12	irgsp1_rep	five_prime_UTR	5040814	5040878	.	-	.	Parent=Os12t0197500-02
Chr12	irgsp1_rep	CDS	5040753	5040813	.	-	0	Parent=Os12t0197500-02
Chr12	irgsp1_rep	CDS	5038634	5039472	.	-	2	Parent=Os12t0197500-02
Chr12	irgsp1_rep	CDS	5037676	5037973	.	-	0	Parent=Os12t0197500-02
Chr12	irgsp1_rep	CDS	5036221	5036465	.	-	2	Parent=Os12t0197500-02
Chr12	irgsp1_rep	CDS	5035974	5036010	.	-	0	Parent=Os12t0197500-02
Chr12	irgsp1_rep	mRNA	5035218	5038664	.	-	.	ID=Os12t0197500-03;Name=Os12t0197500-03;Locus_id=Os12g0197500;Oryzabase Gene Symbol Synonym(s)=OsSGS3;Oryzabase Gene Name Synonym(s)=suppressor of gene silencing 3;Note=Similar to Protein SUPPRESSOR OF GENE SILENCING 3 homolog.;Transcript_evidence=AK061975 (DDBJ%2C Best hit);ORF_evidence=Q2QWE9 (UniProt);InterPro=XS domain (IPR005380);NIAS_FLcDNA=001-043-A02;Oryzabase=12550;Expression=AK061975;TENOR=Os12t0197500-03;KEGG=Os12t0197500-03
Chr12	irgsp1_rep	five_prime_UTR	5038664	5038664	.	-	.	Parent=Os12t0197500-03
Chr12	irgsp1_rep	CDS	5038634	5038663	.	-	0	Parent=Os12t0197500-03
Chr12	irgsp1_rep	CDS	5037676	5037973	.	-	0	Parent=Os12t0197500-03
Chr12	irgsp1_rep	CDS	5036221	5036465	.	-	2	Parent=Os12t0197500-03
Chr12	irgsp1_rep	CDS	5035853	5036010	.	-	0	Parent=Os12t0197500-03
Chr12	irgsp1_rep	CDS	5035471	5035699	.	-	1	Parent=Os12t0197500-03
Chr12	irgsp1_rep	three_prime_UTR	5035218	5035470	.	-	.	Parent=Os12t0197500-03
Chr12	irgsp1_rep	mRNA	5042596	5044626	.	-	.	ID=Os12t0197600-01;Name=Os12t0197600-01;Locus_id=Os12g0197600;Note=Hypothetical gene.;Transcript_evidence=AK070668 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023057B05;Expression=AK070668;TENOR=Os12t0197600-01;KEGG=Os12t0197600-01
Chr12	irgsp1_rep	five_prime_UTR	5044313	5044626	.	-	.	Parent=Os12t0197600-01
Chr12	irgsp1_rep	five_prime_UTR	5044115	5044204	.	-	.	Parent=Os12t0197600-01
Chr12	irgsp1_rep	five_prime_UTR	5043554	5043855	.	-	.	Parent=Os12t0197600-01
Chr12	irgsp1_rep	CDS	5043501	5043553	.	-	0	Parent=Os12t0197600-01
Chr12	irgsp1_rep	CDS	5043195	5043378	.	-	1	Parent=Os12t0197600-01
Chr12	irgsp1_rep	three_prime_UTR	5042596	5043194	.	-	.	Parent=Os12t0197600-01
Chr12	irgsp1_rep	mRNA	5045169	5050440	.	-	.	ID=Os12t0197700-01;Name=Os12t0197700-01;Locus_id=Os12g0197700;Note=Region of unknown function%2C putative Zinc finger%2C XS and XH domain containing protein.;Transcript_evidence=AK100699 (DDBJ%2C Best hit);ORF_evidence=Q2QWE9 (UniProt);InterPro=XS domain (IPR005380),Zinc finger-XS domain (IPR005381);NIAS_FLcDNA=J023114M02;Expression=AK100699;TENOR=Os12t0197700-01;KEGG=Os12t0197700-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	5050379	5050440	.	-	.	Parent=Os12t0197700-01
Chr12	irgsp1_rep	CDS	5050309	5050378	.	-	0	Parent=Os12t0197700-01
Chr12	irgsp1_rep	CDS	5048485	5049551	.	-	2	Parent=Os12t0197700-01
Chr12	irgsp1_rep	CDS	5046996	5047284	.	-	0	Parent=Os12t0197700-01
Chr12	irgsp1_rep	CDS	5046430	5046674	.	-	2	Parent=Os12t0197700-01
Chr12	irgsp1_rep	CDS	5046000	5046157	.	-	0	Parent=Os12t0197700-01
Chr12	irgsp1_rep	CDS	5045629	5045848	.	-	1	Parent=Os12t0197700-01
Chr12	irgsp1_rep	three_prime_UTR	5045169	5045628	.	-	.	Parent=Os12t0197700-01
Chr12	irgsp1_rep	mRNA	5066305	5069189	.	+	.	ID=Os12t0197900-01;Name=Os12t0197900-01;Locus_id=Os12g0197900;Note=Protein of unknown function DUF2363 domain containing protein.;Transcript_evidence=AK059540 (DDBJ%2C Best hit);ORF_evidence=B9GCA9 (UniProt);InterPro=Protein of unknown function DUF2363 (IPR019312);NIAS_FLcDNA=001-029-E08;TENOR=Os12t0197900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	5066305	5066305	.	+	.	Parent=Os12t0197900-01
Chr12	irgsp1_rep	CDS	5066306	5066335	.	+	0	Parent=Os12t0197900-01
Chr12	irgsp1_rep	CDS	5066443	5066516	.	+	0	Parent=Os12t0197900-01
Chr12	irgsp1_rep	CDS	5066604	5066745	.	+	1	Parent=Os12t0197900-01
Chr12	irgsp1_rep	CDS	5067385	5067463	.	+	0	Parent=Os12t0197900-01
Chr12	irgsp1_rep	CDS	5068315	5068412	.	+	2	Parent=Os12t0197900-01
Chr12	irgsp1_rep	three_prime_UTR	5068413	5068423	.	+	.	Parent=Os12t0197900-01
Chr12	irgsp1_rep	three_prime_UTR	5068691	5069189	.	+	.	Parent=Os12t0197900-01
Chr12	irgsp1_rep	mRNA	5070769	5071512	.	-	.	ID=Os12t0198000-01;Name=Os12t0198000-01;Locus_id=Os12g0198000;Note=Protein of unknown function DUF538 family protein.;Transcript_evidence=AK106324 (DDBJ%2C Best hit);ORF_evidence=A2ZIX0 (UniProt);InterPro=Protein of unknown function DUF538 (IPR007493);NIAS_FLcDNA=002-101-E12;Expression=AK106324;TENOR=Os12t0198000-01;KEGG=Os12t0198000-01
Chr12	irgsp1_rep	five_prime_UTR	5071469	5071512	.	-	.	Parent=Os12t0198000-01
Chr12	irgsp1_rep	CDS	5070965	5071468	.	-	0	Parent=Os12t0198000-01
Chr12	irgsp1_rep	three_prime_UTR	5070769	5070964	.	-	.	Parent=Os12t0198000-01
Chr12	irgsp1_rep	mRNA	5076473	5080820	.	-	.	ID=Os12t0198200-00;Name=Os12t0198200-00;Locus_id=Os12g0198200;Oryzabase Gene Symbol Synonym(s)=OsPP2C77%2C PP2C77%2C OsPP129;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C77%2C protein phosphatase 2C 77%2C protein phosphatase 129;Note=Similar to Protein phosphatase 2C.;Transcript_evidence=tplb0019i03 (Wheat FLcDNA);ORF_evidence=Q3V656 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);Oryzabase=17948;TENOR=Os12t0198200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	5080471	5080820	.	-	.	Parent=Os12t0198200-00
Chr12	irgsp1_rep	five_prime_UTR	5077361	5077394	.	-	.	Parent=Os12t0198200-00
Chr12	irgsp1_rep	CDS	5077187	5077360	.	-	0	Parent=Os12t0198200-00
Chr12	irgsp1_rep	CDS	5076473	5076832	.	-	0	Parent=Os12t0198200-00
Chr12	irgsp1_rep	mRNA	5098883	5102465	.	-	.	ID=Os12t0198400-01;Name=Os12t0198400-01;Locus_id=Os12g0198400;Note=Conserved hypothetical protein.;Transcript_evidence=AK242892 (DDBJ%2C Best hit);ORF_evidence=B8BNK7 (UniProt);NIAS_FLcDNA=J090080F02;TENOR=Os12t0198400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	5102270	5102465	.	-	.	Parent=Os12t0198400-01
Chr12	irgsp1_rep	five_prime_UTR	5101239	5102068	.	-	.	Parent=Os12t0198400-01
Chr12	irgsp1_rep	CDS	5100507	5101238	.	-	0	Parent=Os12t0198400-01
Chr12	irgsp1_rep	three_prime_UTR	5098883	5100506	.	-	.	Parent=Os12t0198400-01
Chr12	irgsp1_rep	mRNA	5103731	5104566	.	-	.	ID=Os12t0198500-01;Name=Os12t0198500-01;Locus_id=Os12g0198500;Note=Conserved hypothetical protein.;Transcript_evidence=AK242191 (DDBJ%2C Best hit);ORF_evidence=Q2QWE0 (UniProt);NIAS_FLcDNA=J075163B10;TENOR=Os12t0198500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	5104565	5104566	.	-	.	Parent=Os12t0198500-01
Chr12	irgsp1_rep	CDS	5103959	5104564	.	-	0	Parent=Os12t0198500-01
Chr12	irgsp1_rep	three_prime_UTR	5103731	5103958	.	-	.	Parent=Os12t0198500-01
Chr12	irgsp1_rep	mRNA	5116395	5118098	.	-	.	ID=Os12t0198700-01;Name=Os12t0198700-01;Locus_id=Os12g0198700;Note=Similar to Jasmonate-induced protein.;Transcript_evidence=AK101991 (DDBJ%2C Best hit);ORF_evidence=Q564C9 (UniProt);InterPro=Mannose-binding lectin (IPR001229),Plant disease resistance response protein (IPR004265);NIAS_FLcDNA=J033079F10;Expression=AK101991;TENOR=Os12t0198700-01;KEGG=Os12t0198700-01
Chr12	irgsp1_rep	five_prime_UTR	5118023	5118098	.	-	.	Parent=Os12t0198700-01
Chr12	irgsp1_rep	CDS	5117736	5118022	.	-	0	Parent=Os12t0198700-01
Chr12	irgsp1_rep	CDS	5117322	5117517	.	-	1	Parent=Os12t0198700-01
Chr12	irgsp1_rep	CDS	5117018	5117218	.	-	0	Parent=Os12t0198700-01
Chr12	irgsp1_rep	CDS	5116631	5116870	.	-	0	Parent=Os12t0198700-01
Chr12	irgsp1_rep	three_prime_UTR	5116395	5116630	.	-	.	Parent=Os12t0198700-01
Chr12	irgsp1_rep	mRNA	5116638	5118007	.	+	.	ID=Os12t0198800-00;Name=Os12t0198800-00;Locus_id=Os12g0198800;Note=Hypothetical protein.;Transcript_evidence=BT016217 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0198800-00
Chr12	irgsp1_rep	five_prime_UTR	5116638	5116649	.	+	.	Parent=Os12t0198800-00
Chr12	irgsp1_rep	CDS	5116650	5116889	.	+	0	Parent=Os12t0198800-00
Chr12	irgsp1_rep	three_prime_UTR	5116890	5116894	.	+	.	Parent=Os12t0198800-00
Chr12	irgsp1_rep	three_prime_UTR	5117038	5117230	.	+	.	Parent=Os12t0198800-00
Chr12	irgsp1_rep	three_prime_UTR	5117344	5117515	.	+	.	Parent=Os12t0198800-00
Chr12	irgsp1_rep	three_prime_UTR	5117734	5118007	.	+	.	Parent=Os12t0198800-00
Chr12	irgsp1_rep	mRNA	5125193	5129674	.	+	.	ID=Os12t0198900-00;Name=Os12t0198900-00;Locus_id=Os12g0198900;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=AK335092 (DDBJ);ORF_evidence=Q2QWD6 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os12t0198900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	5125193	5125201	.	+	.	Parent=Os12t0198900-00
Chr12	irgsp1_rep	CDS	5125202	5126281	.	+	0	Parent=Os12t0198900-00
Chr12	irgsp1_rep	CDS	5127809	5129674	.	+	0	Parent=Os12t0198900-00
Chr12	irgsp1_rep	mRNA	5132646	5135246	.	-	.	ID=Os12t0199000-00;Name=Os12t0199000-00;Locus_id=Os12g0199000;Note=Similar to Jasmonate-induced protein.;Transcript_evidence=FP099363 (DDBJ);ORF_evidence=Q564C9 (UniProt);InterPro=Plant disease resistance response protein (IPR004265);TENOR=Os12t0199000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	5134938	5135246	.	-	0	Parent=Os12t0199000-00
Chr12	irgsp1_rep	CDS	5134645	5134737	.	-	0	Parent=Os12t0199000-00
Chr12	irgsp1_rep	three_prime_UTR	5134347	5134644	.	-	.	Parent=Os12t0199000-00
Chr12	irgsp1_rep	three_prime_UTR	5134131	5134241	.	-	.	Parent=Os12t0199000-00
Chr12	irgsp1_rep	three_prime_UTR	5133319	5133404	.	-	.	Parent=Os12t0199000-00
Chr12	irgsp1_rep	three_prime_UTR	5132646	5132942	.	-	.	Parent=Os12t0199000-00
Chr12	irgsp1_rep	mRNA	5134363	5135225	.	+	.	ID=Os12t0199050-00;Name=Os12t0199050-00;Locus_id=Os12g0199050;Note=Hypothetical protein.;Transcript_evidence=BT016217 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0199050-00
Chr12	irgsp1_rep	five_prime_UTR	5134363	5134519	.	+	.	Parent=Os12t0199050-00
Chr12	irgsp1_rep	five_prime_UTR	5134933	5134985	.	+	.	Parent=Os12t0199050-00
Chr12	irgsp1_rep	CDS	5134986	5135201	.	+	0	Parent=Os12t0199050-00
Chr12	irgsp1_rep	three_prime_UTR	5135202	5135225	.	+	.	Parent=Os12t0199050-00
Chr12	irgsp1_rep	mRNA	5137639	5149427	.	-	.	ID=Os12t0199100-01;Name=Os12t0199100-01;Locus_id=Os12g0199100;Note=NB-ARC domain containing protein.;Transcript_evidence=AK065572 (DDBJ%2C Best hit);ORF_evidence=B9GCB3 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013027L21;Oryzabase=14961;Expression=AK065572;TENOR=Os12t0199100-01;KEGG=Os12t0199100-01
Chr12	irgsp1_rep	five_prime_UTR	5149084	5149427	.	-	.	Parent=Os12t0199100-01
Chr12	irgsp1_rep	five_prime_UTR	5147861	5147892	.	-	.	Parent=Os12t0199100-01
Chr12	irgsp1_rep	five_prime_UTR	5147754	5147775	.	-	.	Parent=Os12t0199100-01
Chr12	irgsp1_rep	CDS	5146719	5147753	.	-	0	Parent=Os12t0199100-01
Chr12	irgsp1_rep	CDS	5139362	5141059	.	-	0	Parent=Os12t0199100-01
Chr12	irgsp1_rep	three_prime_UTR	5138912	5139361	.	-	.	Parent=Os12t0199100-01
Chr12	irgsp1_rep	three_prime_UTR	5137639	5138218	.	-	.	Parent=Os12t0199100-01
Chr12	irgsp1_rep	mRNA	5165359	5168612	.	-	.	ID=Os12t0199200-01;Name=Os12t0199200-01;Locus_id=Os12g0199200;Note=Non-protein coding transcript.;Transcript_evidence=AK066878 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013088G14;TENOR=Os12t0199200-01
Chr12	irgsp1_rep	exon	5168366	5168612	.	-	.	Parent=Os12t0199200-01
Chr12	irgsp1_rep	exon	5168082	5168247	.	-	.	Parent=Os12t0199200-01
Chr12	irgsp1_rep	exon	5167926	5167993	.	-	.	Parent=Os12t0199200-01
Chr12	irgsp1_rep	exon	5165359	5167812	.	-	.	Parent=Os12t0199200-01
Chr12	irgsp1_rep	mRNA	5172120	5174438	.	+	.	ID=Os12t0199500-00;Name=Os12t0199500-00;Locus_id=Os12g0199500;CGSNL Gene Symbol=COMTL1;CGSNL Gene Name=CAFFEIC ACID 3-O-METHYLTRANSFERASE LIKE 1;Oryzabase Gene Symbol Synonym(s)=OsCOMTL1;Note=Similar to N-methyltransferase.;Transcript_evidence=U43498 (DDBJ);ORF_evidence=Q2QWD0 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: O-methyltransferase activity (GO:0008171),Molecular Function: protein dimerization activity (GO:0046983);InterPro=O-methyltransferase%2C family 2 (IPR001077),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Plant methyltransferase dimerisation (IPR012967);Oryzabase=10441;TENOR=Os12t0199500-00;KEGG=Os12t0199500-00
Chr12	irgsp1_rep	CDS	5172120	5172505	.	+	0	Parent=Os12t0199500-00
Chr12	irgsp1_rep	CDS	5172858	5173101	.	+	1	Parent=Os12t0199500-00
Chr12	irgsp1_rep	three_prime_UTR	5173102	5173171	.	+	.	Parent=Os12t0199500-00
Chr12	irgsp1_rep	three_prime_UTR	5173522	5173586	.	+	.	Parent=Os12t0199500-00
Chr12	irgsp1_rep	three_prime_UTR	5174104	5174438	.	+	.	Parent=Os12t0199500-00
Chr12	irgsp1_rep	mRNA	5184081	5186323	.	-	.	ID=Os12t0199800-01;Name=Os12t0199800-01;Locus_id=Os12g0199800;CGSNL Gene Symbol=CYP76M13;CGSNL Gene Name=P-450 76M13;Oryzabase Gene Symbol Synonym(s)=CYP76M13;Oryzabase Gene Name Synonym(s)=CytoChrome P450 76M13;Note=Similar to Cyt-P450 monooxygenase.;Transcript_evidence=AK288730 (DDBJ%2C Best hit);ORF_evidence=Q8S3F6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);NIAS_FLcDNA=J090063F11;Oryzabase=12424;TENOR=Os12t0199800-01;KEGG=Os12t0199800-01 (EC:1.14.99.9)
Chr12	irgsp1_rep	five_prime_UTR	5185960	5186323	.	-	.	Parent=Os12t0199800-01
Chr12	irgsp1_rep	CDS	5184493	5185959	.	-	0	Parent=Os12t0199800-01
Chr12	irgsp1_rep	three_prime_UTR	5184081	5184492	.	-	.	Parent=Os12t0199800-01
Chr12	irgsp1_rep	mRNA	5364515	5365774	.	+	.	ID=Os12t0202700-00;Name=Os12t0202700-00;Locus_id=Os12g0202700;Note=Similar to N-methyltransferase.;Transcript_evidence=CU406772 (DDBJ%2C Best hit);ORF_evidence=Q96565 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: O-methyltransferase activity (GO:0008171),Molecular Function: protein dimerization activity (GO:0046983);InterPro=O-methyltransferase%2C family 2 (IPR001077),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Plant methyltransferase dimerisation (IPR012967);TENOR=Os12t0202700-00;KEGG=Os12t0202700-00
Chr12	irgsp1_rep	five_prime_UTR	5364515	5364516	.	+	.	Parent=Os12t0202700-00
Chr12	irgsp1_rep	CDS	5364517	5364845	.	+	0	Parent=Os12t0202700-00
Chr12	irgsp1_rep	CDS	5365038	5365374	.	+	1	Parent=Os12t0202700-00
Chr12	irgsp1_rep	three_prime_UTR	5365375	5365774	.	+	.	Parent=Os12t0202700-00
Chr12	irgsp1_rep	mRNA	5384958	5387006	.	+	.	ID=Os12t0202850-01;Name=Os12t0202850-01;Locus_id=Os12g0202850;RAP-DB Gene Symbol Synonym(s)=PGL12;RAP-DB Gene Name Synonym(s)=PALE-GREEN LEAF12;Note=Pentatricopeptide repeat (PPR) protein%2C Chloroplast development%2C Processing of 16S rRNA;Transcript_evidence=AK249519 (barley);ORF_evidence=Inferred from literature;GO=Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical domain superfamily (IPR011990),Pentatricopeptide repeat (IPR002885);Manual Curation=December 11%2C 2018;Literature_PMID=30508149;Subcellular location=chloroplast (GO:0009507)
Chr12	irgsp1_rep	CDS	5384958	5387006	.	+	0	Parent=Os12t0202850-01
Chr12	irgsp1_rep	mRNA	5385092	5385598	.	-	.	ID=Os12t0202851-00;Name=Os12t0202851-00;Locus_id=Os12g0202851;Note=Hypothetical protein.;Transcript_evidence=AK357511 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0202851-00
Chr12	irgsp1_rep	five_prime_UTR	5385597	5385598	.	-	.	Parent=Os12t0202851-00
Chr12	irgsp1_rep	CDS	5385092	5385596	.	-	0	Parent=Os12t0202851-00
Chr12	irgsp1_rep	mRNA	5387790	5391703	.	+	.	ID=Os12t0203000-01;Name=Os12t0203000-01;Locus_id=Os12g0203000;Oryzabase Gene Symbol Synonym(s)=Orysa%3BCKL8%2C OsSTA277;Oryzabase Gene Name Synonym(s)=CDK-LIKE 8%2C cyclin-dependent kinase-like 8;Note=Similar to Cyclin-dependent protein kinase-like protein.;Transcript_evidence=AK100360 (DDBJ%2C Best hit);ORF_evidence=Q2QW88 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023083L23;Oryzabase=13306;Expression=AK100360;TENOR=Os12t0203000-01;KEGG=Os12t0203000-01 (EC:2.7.11.22)
Chr12	irgsp1_rep	five_prime_UTR	5387790	5388012	.	+	.	Parent=Os12t0203000-01
Chr12	irgsp1_rep	CDS	5388013	5388063	.	+	0	Parent=Os12t0203000-01
Chr12	irgsp1_rep	CDS	5388407	5388838	.	+	0	Parent=Os12t0203000-01
Chr12	irgsp1_rep	CDS	5388932	5389270	.	+	0	Parent=Os12t0203000-01
Chr12	irgsp1_rep	three_prime_UTR	5389271	5389638	.	+	.	Parent=Os12t0203000-01
Chr12	irgsp1_rep	three_prime_UTR	5389753	5389980	.	+	.	Parent=Os12t0203000-01
Chr12	irgsp1_rep	three_prime_UTR	5390261	5390361	.	+	.	Parent=Os12t0203000-01
Chr12	irgsp1_rep	three_prime_UTR	5390444	5390549	.	+	.	Parent=Os12t0203000-01
Chr12	irgsp1_rep	three_prime_UTR	5390779	5391129	.	+	.	Parent=Os12t0203000-01
Chr12	irgsp1_rep	three_prime_UTR	5391259	5391703	.	+	.	Parent=Os12t0203000-01
Chr12	irgsp1_rep	mRNA	5391987	5394918	.	-	.	ID=Os12t0203100-01;Name=Os12t0203100-01;Locus_id=Os12g0203100;Note=Similar to methyltransferase.;Transcript_evidence=AK242060 (DDBJ%2C Best hit);ORF_evidence=NP_173694.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Methyltransferase type 11 (IPR013216);NIAS_FLcDNA=J075126L22;TENOR=Os12t0203100-01;KEGG=Os12t0203100-01
Chr12	irgsp1_rep	five_prime_UTR	5394861	5394918	.	-	.	Parent=Os12t0203100-01
Chr12	irgsp1_rep	CDS	5394527	5394860	.	-	0	Parent=Os12t0203100-01
Chr12	irgsp1_rep	CDS	5394229	5394367	.	-	2	Parent=Os12t0203100-01
Chr12	irgsp1_rep	CDS	5393840	5393909	.	-	1	Parent=Os12t0203100-01
Chr12	irgsp1_rep	CDS	5393728	5393745	.	-	0	Parent=Os12t0203100-01
Chr12	irgsp1_rep	three_prime_UTR	5393686	5393727	.	-	.	Parent=Os12t0203100-01
Chr12	irgsp1_rep	three_prime_UTR	5393508	5393586	.	-	.	Parent=Os12t0203100-01
Chr12	irgsp1_rep	three_prime_UTR	5392834	5393285	.	-	.	Parent=Os12t0203100-01
Chr12	irgsp1_rep	three_prime_UTR	5391987	5392745	.	-	.	Parent=Os12t0203100-01
Chr12	irgsp1_rep	mRNA	5399052	5401325	.	+	.	ID=Os12t0203200-01;Name=Os12t0203200-01;Locus_id=Os12g0203200;Note=Conserved hypothetical protein.;Transcript_evidence=AK063151 (DDBJ%2C Best hit);ORF_evidence=A2XF02 (UniProt);NIAS_FLcDNA=001-111-H07;Expression=AK063151;TENOR=Os12t0203200-01;KEGG=Os12t0203200-01
Chr12	irgsp1_rep	five_prime_UTR	5399052	5399100	.	+	.	Parent=Os12t0203200-01
Chr12	irgsp1_rep	CDS	5399101	5399277	.	+	0	Parent=Os12t0203200-01
Chr12	irgsp1_rep	CDS	5401038	5401163	.	+	0	Parent=Os12t0203200-01
Chr12	irgsp1_rep	three_prime_UTR	5401164	5401325	.	+	.	Parent=Os12t0203200-01
Chr12	irgsp1_rep	mRNA	5411561	5412020	.	-	.	ID=Os12t0203300-00;Name=Os12t0203300-00;Locus_id=Os12g0203300;Note=Similar to amino acid permease 1.;Transcript_evidence=EU949945 (DDBJ);ORF_evidence=NP_001149517.1 (RefSeq);InterPro=Amino acid transporter%2C transmembrane (IPR013057);TENOR=Os12t0203300-00
Chr12	irgsp1_rep	CDS	5411799	5412020	.	-	0	Parent=Os12t0203300-00
Chr12	irgsp1_rep	three_prime_UTR	5411561	5411798	.	-	.	Parent=Os12t0203300-00
Chr12	irgsp1_rep	mRNA	5414266	5414587	.	-	.	ID=Os12t0203400-00;Name=Os12t0203400-00;Locus_id=Os12g0203400;Note=Non-protein coding transcript.;Transcript_evidence=EU944056 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0203400-00
Chr12	irgsp1_rep	exon	5414486	5414587	.	-	.	Parent=Os12t0203400-00
Chr12	irgsp1_rep	exon	5414266	5414375	.	-	.	Parent=Os12t0203400-00
Chr12	irgsp1_rep	mRNA	5415946	5417674	.	+	.	ID=Os12t0203500-00;Name=Os12t0203500-00;Locus_id=Os12g0203500;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=EU956799 (DDBJ);ORF_evidence=Q2QW82 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),von Willebrand factor%2C type A (IPR002035),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);TENOR=Os12t0203500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	5415946	5416818	.	+	0	Parent=Os12t0203500-00
Chr12	irgsp1_rep	CDS	5416901	5417674	.	+	0	Parent=Os12t0203500-00
Chr12	irgsp1_rep	mRNA	5416316	5417571	.	-	.	ID=Os12t0203700-00;Name=Os12t0203700-00;Locus_id=Os12g0203700;Note=Hypothetical protein.;Transcript_evidence=BT064817 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0203700-00
Chr12	irgsp1_rep	five_prime_UTR	5417571	5417571	.	-	.	Parent=Os12t0203700-00
Chr12	irgsp1_rep	CDS	5417019	5417570	.	-	0	Parent=Os12t0203700-00
Chr12	irgsp1_rep	three_prime_UTR	5416757	5417018	.	-	.	Parent=Os12t0203700-00
Chr12	irgsp1_rep	three_prime_UTR	5416316	5416671	.	-	.	Parent=Os12t0203700-00
Chr12	irgsp1_rep	mRNA	5429518	5430465	.	-	.	ID=Os12t0203900-01;Name=Os12t0203900-01;Locus_id=Os12g0203900;Note=Hypothetical gene.;Transcript_evidence=AK072494 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023132P07;Expression=AK072494;TENOR=Os12t0203900-01;KEGG=Os12t0203900-01
Chr12	irgsp1_rep	five_prime_UTR	5430465	5430465	.	-	.	Parent=Os12t0203900-01
Chr12	irgsp1_rep	CDS	5430219	5430464	.	-	0	Parent=Os12t0203900-01
Chr12	irgsp1_rep	three_prime_UTR	5429969	5430218	.	-	.	Parent=Os12t0203900-01
Chr12	irgsp1_rep	three_prime_UTR	5429518	5429886	.	-	.	Parent=Os12t0203900-01
Chr12	irgsp1_rep	mRNA	5432575	5434437	.	+	.	ID=Os12t0204000-00;Name=Os12t0204000-00;Locus_id=Os12g0204000;Note=Similar to HAT family dimerisation domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QW80 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein dimerization activity (GO:0046983);InterPro=HAT dimerisation (IPR008906),Ribonuclease H-like (IPR012337);TENOR=Os12t0204000-00
Chr12	irgsp1_rep	CDS	5432575	5432708	.	+	0	Parent=Os12t0204000-00
Chr12	irgsp1_rep	CDS	5432735	5433573	.	+	1	Parent=Os12t0204000-00
Chr12	irgsp1_rep	CDS	5433773	5434437	.	+	2	Parent=Os12t0204000-00
Chr12	irgsp1_rep	mRNA	5436086	5439545	.	+	.	ID=Os12t0204100-01;Name=Os12t0204100-01;Locus_id=Os12g0204100;CGSNL Gene Symbol=NIP3%3B5;CGSNL Gene Name=NOD26 LIKE INTRINSIC PROTEIN 3%3B5;Oryzabase Gene Symbol Synonym(s)=OsNIP3%3B5%2C NIP3-5;Oryzabase Gene Name Synonym(s)=Aquaporin NIP3-5%2C NOD26-like intrinsic protein 3-5;Note=Similar to Major intrinsic protein%2C expressed.;Transcript_evidence=AK243580 (DDBJ%2C Best hit);ORF_evidence=Q2QW79 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Major intrinsic protein (IPR000425),Major intrinsic protein%2C conserved site (IPR022357),Aquaporin-like (IPR023271);NIAS_FLcDNA=J100082L18;Oryzabase=19070;TENOR=Os12t0204100-01;KEGG=Os12t0204100-01
Chr12	irgsp1_rep	five_prime_UTR	5436086	5436087	.	+	.	Parent=Os12t0204100-01
Chr12	irgsp1_rep	CDS	5436088	5436753	.	+	0	Parent=Os12t0204100-01
Chr12	irgsp1_rep	CDS	5438522	5438583	.	+	0	Parent=Os12t0204100-01
Chr12	irgsp1_rep	CDS	5438888	5439035	.	+	1	Parent=Os12t0204100-01
Chr12	irgsp1_rep	three_prime_UTR	5439036	5439545	.	+	.	Parent=Os12t0204100-01
Chr12	irgsp1_rep	mRNA	5440542	5441805	.	-	.	ID=Os12t0204200-01;Name=Os12t0204200-01;Locus_id=Os12g0204200;Note=Hypothetical conserved gene.;Transcript_evidence=AK287570 (DDBJ%2C Best hit);ORF_evidence=B9EWA9 (UniProt);NIAS_FLcDNA=J065032D23;TENOR=Os12t0204200-01;KEGG=Os12t0204200-01
Chr12	irgsp1_rep	five_prime_UTR	5441616	5441805	.	-	.	Parent=Os12t0204200-01
Chr12	irgsp1_rep	CDS	5441118	5441615	.	-	0	Parent=Os12t0204200-01
Chr12	irgsp1_rep	three_prime_UTR	5440542	5441117	.	-	.	Parent=Os12t0204200-01
Chr12	irgsp1_rep	mRNA	5455305	5456824	.	-	.	ID=Os12t0204500-01;Name=Os12t0204500-01;Locus_id=Os12g0204500;CGSNL Gene Symbol=GXMT1;CGSNL Gene Name=GLUCURONOXYLAN 4-O-METHYLTRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=OsGXMT1;Oryzabase Gene Name Synonym(s)=glucuronoxylan 4-O-methyltransferase 1;Note=Protein of unknown function DUF579%2C plant family protein.;Transcript_evidence=AK069867 (DDBJ%2C Best hit);ORF_evidence=NP_001147380.1 (RefSeq);InterPro=Conserved hypothetical protein CHP01627 (IPR006514),Protein of unknown function DUF579 (IPR021148);NIAS_FLcDNA=J023038F14;Oryzabase=23317;Expression=AK069867;TENOR=Os12t0204500-01;KEGG=Os12t0204500-01
Chr12	irgsp1_rep	five_prime_UTR	5456708	5456824	.	-	.	Parent=Os12t0204500-01
Chr12	irgsp1_rep	CDS	5455820	5456707	.	-	0	Parent=Os12t0204500-01
Chr12	irgsp1_rep	three_prime_UTR	5455305	5455819	.	-	.	Parent=Os12t0204500-01
Chr12	irgsp1_rep	mRNA	5455695	5457079	.	+	.	ID=Os12t0204550-01;Name=Os12t0204550-01;Locus_id=Os12g0204550;Note=Hypothetical gene.;Transcript_evidence=AK241778 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J065205P14;TENOR=Os12t0204550-01;KEGG=Os12t0204550-01
Chr12	irgsp1_rep	CDS	5455695	5455904	.	+	0	Parent=Os12t0204550-01
Chr12	irgsp1_rep	three_prime_UTR	5455905	5457079	.	+	.	Parent=Os12t0204550-01
Chr12	irgsp1_rep	mRNA	5469046	5471369	.	-	.	ID=Os12t0204600-01;Name=Os12t0204600-01;Locus_id=Os12g0204600;Note=NB-ARC domain containing protein.;Transcript_evidence=AK102672 (DDBJ%2C Best hit);ORF_evidence=Q2QW68 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J033102B20;Expression=AK102672;TENOR=Os12t0204600-01;KEGG=Os12t0204600-01
Chr12	irgsp1_rep	five_prime_UTR	5471264	5471369	.	-	.	Parent=Os12t0204600-01
Chr12	irgsp1_rep	CDS	5469341	5471263	.	-	0	Parent=Os12t0204600-01
Chr12	irgsp1_rep	three_prime_UTR	5469046	5469340	.	-	.	Parent=Os12t0204600-01
Chr12	irgsp1_rep	mRNA	5475227	5477351	.	+	.	ID=Os12t0204800-01;Name=Os12t0204800-01;Locus_id=Os12g0204800;Note=Disease resistance protein domain containing protein.;Transcript_evidence=AK102485 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J033094M06;TENOR=Os12t0204800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	5475227	5475227	.	+	.	Parent=Os12t0204800-01
Chr12	irgsp1_rep	CDS	5475228	5477186	.	+	0	Parent=Os12t0204800-01
Chr12	irgsp1_rep	three_prime_UTR	5477187	5477351	.	+	.	Parent=Os12t0204800-01
Chr12	irgsp1_rep	mRNA	5484753	5489765	.	+	.	ID=Os12t0205100-00;Name=Os12t0205100-00;Locus_id=Os12g0205100;Note=Conserved hypothetical protein.;Transcript_evidence=AK376407 (DDBJ);ORF_evidence=Q2QW70 (UniProt);TENOR=Os12t0205100-00
Chr12	irgsp1_rep	five_prime_UTR	5484753	5484822	.	+	.	Parent=Os12t0205100-00
Chr12	irgsp1_rep	CDS	5484823	5484996	.	+	0	Parent=Os12t0205100-00
Chr12	irgsp1_rep	CDS	5489424	5489765	.	+	0	Parent=Os12t0205100-00
Chr12	irgsp1_rep	mRNA	5508787	5514994	.	-	.	ID=Os12t0205500-01;Name=Os12t0205500-01;Locus_id=Os12g0205500;Note=NB-ARC domain containing protein.;Transcript_evidence=AK072670 (DDBJ%2C Best hit);ORF_evidence=B8BNL2 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J023136B13;Expression=AK072670;TENOR=Os12t0205500-01;KEGG=Os12t0205500-01
Chr12	irgsp1_rep	five_prime_UTR	5514948	5514994	.	-	.	Parent=Os12t0205500-01
Chr12	irgsp1_rep	CDS	5513841	5514947	.	-	0	Parent=Os12t0205500-01
Chr12	irgsp1_rep	CDS	5508932	5510644	.	-	0	Parent=Os12t0205500-01
Chr12	irgsp1_rep	three_prime_UTR	5508787	5508931	.	-	.	Parent=Os12t0205500-01
Chr12	irgsp1_rep	mRNA	5535012	5535540	.	+	.	ID=Os12t0205633-00;Name=Os12t0205633-00;Locus_id=Os12g0205633;Note=Conserved hypothetical protein.;Transcript_evidence=EU954383 (DDBJ);ORF_evidence=B8BNL3 (UniProt);TENOR=Os12t0205633-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	5535012	5535225	.	+	.	Parent=Os12t0205633-00
Chr12	irgsp1_rep	CDS	5535226	5535540	.	+	0	Parent=Os12t0205633-00
Chr12	irgsp1_rep	mRNA	5568838	5573431	.	+	.	ID=Os12t0206700-01;Name=Os12t0206700-01;Locus_id=Os12g0206700;Note=Hypothetical protein.;Transcript_evidence=AK071313 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J023084A11;TENOR=Os12t0206700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	5568838	5568839	.	+	.	Parent=Os12t0206700-01
Chr12	irgsp1_rep	CDS	5568840	5569313	.	+	0	Parent=Os12t0206700-01
Chr12	irgsp1_rep	three_prime_UTR	5569314	5569320	.	+	.	Parent=Os12t0206700-01
Chr12	irgsp1_rep	three_prime_UTR	5573045	5573431	.	+	.	Parent=Os12t0206700-01
Chr12	irgsp1_rep	mRNA	5569644	5573023	.	-	.	ID=Os12t0206800-00;Name=Os12t0206800-00;Locus_id=Os12g0206800;CGSNL Gene Symbol=MADS33;CGSNL Gene Name=MADS BOX GENE 33;Oryzabase Gene Symbol Synonym(s)=OsMADS33;Oryzabase Gene Name Synonym(s)=MADS box gene33%2C MADS-box transcription factor 33;Note=Transcription factor%2C MADS-box domain containing protein.;Transcript_evidence=AY177700 (DDBJ%2C Best hit);ORF_evidence=Q2QW55 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box (IPR002100),Transcription factor%2C K-box (IPR002487);Oryzabase=3098;Expression=AY177700;TENOR=Os12t0206800-00;KEGG=Os12t0206800-00
Chr12	irgsp1_rep	CDS	5572842	5573023	.	-	0	Parent=Os12t0206800-00
Chr12	irgsp1_rep	CDS	5572676	5572754	.	-	1	Parent=Os12t0206800-00
Chr12	irgsp1_rep	CDS	5572385	5572449	.	-	0	Parent=Os12t0206800-00
Chr12	irgsp1_rep	CDS	5571553	5571652	.	-	1	Parent=Os12t0206800-00
Chr12	irgsp1_rep	CDS	5571422	5571463	.	-	0	Parent=Os12t0206800-00
Chr12	irgsp1_rep	CDS	5570626	5570667	.	-	0	Parent=Os12t0206800-00
Chr12	irgsp1_rep	CDS	5569658	5569756	.	-	0	Parent=Os12t0206800-00
Chr12	irgsp1_rep	three_prime_UTR	5569644	5569657	.	-	.	Parent=Os12t0206800-00
Chr12	irgsp1_rep	mRNA	5579279	5581544	.	-	.	ID=Os12t0206950-00;Name=Os12t0206950-00;Locus_id=Os12g0206950;Note=Non-protein coding transcript.;Transcript_evidence=CT835567 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os12t0206950-00
Chr12	irgsp1_rep	exon	5581218	5581544	.	-	.	Parent=Os12t0206950-00
Chr12	irgsp1_rep	exon	5579279	5580681	.	-	.	Parent=Os12t0206950-00
Chr12	irgsp1_rep	mRNA	5584743	5590285	.	+	.	ID=Os12t0207000-01;Name=Os12t0207000-01;Locus_id=Os12g0207000;RAP-DB Gene Symbol Synonym(s)=OsMADS13;RAP-DB Gene Name Synonym(s)=MADS-box transcription factor 13;CGSNL Gene Symbol=MADS13;CGSNL Gene Name=MADS BOX GENE 13;Oryzabase Gene Symbol Synonym(s)=OsMADS13%2C MAF1%2C RMADS206;Oryzabase Gene Name Synonym(s)=MADS box gene13%2C MADS-box transcription factor 13;Note=Floral homeotic gene%2C Ortholog of Arabidopsis STK (SEEDSTICK)%2C Specification of flower organ identity and meristem determinacy;Transcript_evidence=AK070425;ORF_evidence=Q2QW53;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Biological Process: positive regulation of transcription by RNA polymerase II (GO:0045944),Molecular Function: RNA polymerase II regulatory region sequence-specific DNA binding (GO:0000977),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-binding transcription factor activity (GO:0003700),Molecular Function: protein dimerization activity (GO:0046983),Cellular Component: nucleus (GO:0005634);InterPro=Transcription factor%2C MADS-box superfamily (IPR036879),Transcription factor%2C MADS-box (IPR002100),MADS MEF2-like (IPR033896),Transcription factor%2C K-box (IPR002487);NIAS_FLcDNA=J023050A03;Manual Curation=September 2%2C 2020;Literature_PMID=21784949,21444646;Oryzabase=3081;Expression=AK070425;TENOR=Os12t0207000-01;KEGG=Os12t0207000-01
Chr12	irgsp1_rep	five_prime_UTR	5584743	5584790	.	+	.	Parent=Os12t0207000-01
Chr12	irgsp1_rep	five_prime_UTR	5586153	5586168	.	+	.	Parent=Os12t0207000-01
Chr12	irgsp1_rep	CDS	5586169	5586353	.	+	0	Parent=Os12t0207000-01
Chr12	irgsp1_rep	CDS	5587939	5588023	.	+	1	Parent=Os12t0207000-01
Chr12	irgsp1_rep	CDS	5588663	5588727	.	+	0	Parent=Os12t0207000-01
Chr12	irgsp1_rep	CDS	5588884	5588983	.	+	1	Parent=Os12t0207000-01
Chr12	irgsp1_rep	CDS	5589206	5589247	.	+	0	Parent=Os12t0207000-01
Chr12	irgsp1_rep	CDS	5589397	5589438	.	+	0	Parent=Os12t0207000-01
Chr12	irgsp1_rep	CDS	5589656	5589949	.	+	0	Parent=Os12t0207000-01
Chr12	irgsp1_rep	three_prime_UTR	5589950	5590285	.	+	.	Parent=Os12t0207000-01
Chr12	irgsp1_rep	mRNA	5596782	5598867	.	+	.	ID=Os12t0207200-01;Name=Os12t0207200-01;Locus_id=Os12g0207200;CGSNL Gene Symbol=MSL41;CGSNL Gene Name=MYB/SANT-LIKE 41;Oryzabase Gene Symbol Synonym(s)=OsMSL41;Oryzabase Gene Name Synonym(s)=Myb/SANT-LIKE 41;Note=Myb/SANT-like domain domain containing protein.;Transcript_evidence=AK065459 (DDBJ%2C Best hit);ORF_evidence=B9GCC4 (UniProt);InterPro=Myb/SANT-like domain (IPR024752);NIAS_FLcDNA=J013025C01;Oryzabase=22944;TENOR=Os12t0207200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	5596782	5596782	.	+	.	Parent=Os12t0207200-01
Chr12	irgsp1_rep	CDS	5596783	5596911	.	+	0	Parent=Os12t0207200-01
Chr12	irgsp1_rep	CDS	5597736	5598044	.	+	0	Parent=Os12t0207200-01
Chr12	irgsp1_rep	CDS	5598122	5598700	.	+	0	Parent=Os12t0207200-01
Chr12	irgsp1_rep	three_prime_UTR	5598701	5598867	.	+	.	Parent=Os12t0207200-01
Chr12	irgsp1_rep	mRNA	5602196	5606141	.	+	.	ID=Os12t0207300-01;Name=Os12t0207300-01;Locus_id=Os12g0207300;Note=Similar to Clathrin coat assembly protein AP17 (Clathrin coat associated protein AP17) (Plasma membrane adaptor AP-2 17 kDa protein) (HA2 17 kDa subunit) (Clathrin assembly protein 2 small chain).;Transcript_evidence=AK069232 (DDBJ%2C Best hit),AK104086 (DDBJ%2C Best hit);ORF_evidence=Q8W4U9 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: protein transport (GO:0015031),Molecular Function: protein transporter activity (GO:0008565);InterPro=Longin-like (IPR011012),Adaptor protein complex%2C sigma subunit (IPR016635),AP complex%2C mu/sigma subunit (IPR022775);NIAS_FLcDNA=J023010A09,001-029-F07;TENOR=Os12t0207300-01
Chr12	irgsp1_rep	five_prime_UTR	5602196	5602328	.	+	.	Parent=Os12t0207300-01
Chr12	irgsp1_rep	CDS	5602329	5602331	.	+	0	Parent=Os12t0207300-01
Chr12	irgsp1_rep	CDS	5602416	5602514	.	+	0	Parent=Os12t0207300-01
Chr12	irgsp1_rep	CDS	5602598	5602648	.	+	0	Parent=Os12t0207300-01
Chr12	irgsp1_rep	CDS	5603819	5603992	.	+	0	Parent=Os12t0207300-01
Chr12	irgsp1_rep	CDS	5604866	5604925	.	+	0	Parent=Os12t0207300-01
Chr12	irgsp1_rep	CDS	5605756	5605797	.	+	0	Parent=Os12t0207300-01
Chr12	irgsp1_rep	three_prime_UTR	5605798	5606141	.	+	.	Parent=Os12t0207300-01
Chr12	irgsp1_rep	mRNA	5612066	5613106	.	-	.	ID=Os12t0207500-00;Name=Os12t0207500-00;Locus_id=Os12g0207500;Note=Similar to ATP synthase subunit beta.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QW50 (UniProt);GO=Biological Process: ATP synthesis coupled proton transport (GO:0015986),Biological Process: ATP hydrolysis coupled proton transport (GO:0015991),Biological Process: proton transport (GO:0015992),Biological Process: ATP metabolic process (GO:0046034),Cellular Component: proton-transporting two-sector ATPase complex (GO:0016469),Cellular Component: proton-transporting two-sector ATPase complex%2C catalytic domain (GO:0033178),Cellular Component: proton-transporting ATP synthase complex%2C catalytic core F(1) (GO:0045261),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrogen-exporting ATPase activity%2C phosphorylative mechanism (GO:0008553),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C catalyzing transmembrane movement of substances (GO:0016820),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: hydrogen ion transporting ATP synthase activity%2C rotational mechanism (GO:0046933),Molecular Function: proton-transporting ATPase activity%2C rotational mechanism (GO:0046961);InterPro=ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C nucleotide-binding domain (IPR000194),ATPase%2C F1/V1/A1 complex%2C alpha/beta subunit%2C C-terminal (IPR000793),ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C F1 complex%2C beta subunit (IPR005722),ATPase%2C F1/A1 complex%2C alpha/beta subunit%2C N-terminal (IPR018118),ATPase%2C alpha/beta subunit%2C nucleotide-binding domain%2C active site (IPR020003),ATPase%2C F1 complex beta subunit/V1 complex%2C C-terminal (IPR024034);TENOR=Os12t0207500-00
Chr12	irgsp1_rep	CDS	5612066	5613106	.	-	0	Parent=Os12t0207500-00
Chr12	irgsp1_rep	mRNA	5614140	5615573	.	+	.	ID=Os12t0207600-00;Name=Os12t0207600-00;Locus_id=Os12g0207600;Note=Similar to ribulose-1%2C5-bisphosphate carboxylase/oxygenase large subunit.;Transcript_evidence=ab initio prediction;ORF_evidence=YP_654221.1 (RefSeq);GO=Biological Process: carbon fixation (GO:0015977),Cellular Component: plastid (GO:0009536),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: ribulose-bisphosphate carboxylase activity (GO:0016984);InterPro=Ribulose bisphosphate carboxylase%2C large subunit%2C C-terminal (IPR000685),Ribulose bisphosphate carboxylase%2C large subunit%2C ferrodoxin-like N-terminal (IPR017443),Ribulose bisphosphate carboxylase%2C large subunit%2C N-terminal (IPR017444),Ribulose bisphosphate carboxylase%2C large chain%2C active site (IPR020878),Ribulose bisphosphate carboxylase%2C large subunit (IPR020888);TENOR=Os12t0207600-00
Chr12	irgsp1_rep	CDS	5614140	5615573	.	+	0	Parent=Os12t0207600-00
Chr12	irgsp1_rep	mRNA	5674410	5676438	.	+	.	ID=Os12t0208900-00;Name=Os12t0208900-00;Locus_id=Os12g0208900;Oryzabase Gene Symbol Synonym(s)=OsZHD3;Oryzabase Gene Name Synonym(s)=zinc finger homeodomain class homeobox transcription factor 3;Note=Similar to ZF-HD protein dimerisation region containing protein%2C expressed.;Transcript_evidence=CT835526 (DDBJ%2C Best hit);ORF_evidence=Q2QW44 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Homeobox domain%2C ZF-HD class (IPR006455),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);Oryzabase=15616;TENOR=Os12t0208900-00;KEGG=Os12t0208900-00
Chr12	irgsp1_rep	five_prime_UTR	5674410	5674609	.	+	.	Parent=Os12t0208900-00
Chr12	irgsp1_rep	five_prime_UTR	5675386	5675434	.	+	.	Parent=Os12t0208900-00
Chr12	irgsp1_rep	CDS	5675435	5675513	.	+	0	Parent=Os12t0208900-00
Chr12	irgsp1_rep	CDS	5675835	5676424	.	+	2	Parent=Os12t0208900-00
Chr12	irgsp1_rep	three_prime_UTR	5676425	5676438	.	+	.	Parent=Os12t0208900-00
Chr12	irgsp1_rep	mRNA	5675631	5676326	.	-	.	ID=Os12t0208950-00;Name=Os12t0208950-00;Locus_id=Os12g0208950;Note=Hypothetical protein.;Transcript_evidence=tplb0061c13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0208950-00
Chr12	irgsp1_rep	five_prime_UTR	5676326	5676326	.	-	.	Parent=Os12t0208950-00
Chr12	irgsp1_rep	CDS	5675631	5676325	.	-	0	Parent=Os12t0208950-00
Chr12	irgsp1_rep	mRNA	5685138	5689991	.	-	.	ID=Os12t0209000-00;Name=Os12t0209000-00;Locus_id=Os12g0209000;Note=Similar to sporulation protein-related.;Transcript_evidence=EU970344 (DDBJ);ORF_evidence=NP_174599.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959);TENOR=Os12t0209000-00;KEGG=Os12t0209000-00
Chr12	irgsp1_rep	five_prime_UTR	5689902	5689991	.	-	.	Parent=Os12t0209000-00
Chr12	irgsp1_rep	CDS	5689701	5689901	.	-	0	Parent=Os12t0209000-00
Chr12	irgsp1_rep	CDS	5688627	5688689	.	-	0	Parent=Os12t0209000-00
Chr12	irgsp1_rep	CDS	5688448	5688525	.	-	0	Parent=Os12t0209000-00
Chr12	irgsp1_rep	CDS	5688124	5688344	.	-	0	Parent=Os12t0209000-00
Chr12	irgsp1_rep	CDS	5687370	5687442	.	-	1	Parent=Os12t0209000-00
Chr12	irgsp1_rep	CDS	5686982	5687266	.	-	0	Parent=Os12t0209000-00
Chr12	irgsp1_rep	CDS	5686363	5686506	.	-	0	Parent=Os12t0209000-00
Chr12	irgsp1_rep	CDS	5685644	5685694	.	-	0	Parent=Os12t0209000-00
Chr12	irgsp1_rep	CDS	5685242	5685313	.	-	0	Parent=Os12t0209000-00
Chr12	irgsp1_rep	three_prime_UTR	5685138	5685241	.	-	.	Parent=Os12t0209000-00
Chr12	irgsp1_rep	mRNA	5692925	5696271	.	+	.	ID=Os12t0209100-01;Name=Os12t0209100-01;Locus_id=Os12g0209100;Note=Similar to predicted protein.;Transcript_evidence=AK242941 (DDBJ%2C Best hit);ORF_evidence=Q2QW42 (UniProt);NIAS_FLcDNA=J090087H23;TENOR=Os12t0209100-01;KEGG=Os12t0209100-01
Chr12	irgsp1_rep	five_prime_UTR	5692925	5693010	.	+	.	Parent=Os12t0209100-01
Chr12	irgsp1_rep	five_prime_UTR	5694015	5694047	.	+	.	Parent=Os12t0209100-01
Chr12	irgsp1_rep	CDS	5694048	5694142	.	+	0	Parent=Os12t0209100-01
Chr12	irgsp1_rep	CDS	5695223	5695345	.	+	1	Parent=Os12t0209100-01
Chr12	irgsp1_rep	CDS	5695529	5695631	.	+	1	Parent=Os12t0209100-01
Chr12	irgsp1_rep	CDS	5695794	5696042	.	+	0	Parent=Os12t0209100-01
Chr12	irgsp1_rep	three_prime_UTR	5696043	5696271	.	+	.	Parent=Os12t0209100-01
Chr12	irgsp1_rep	mRNA	5699790	5702413	.	+	.	ID=Os12t0209200-01;Name=Os12t0209200-01;Locus_id=Os12g0209200;Oryzabase Gene Symbol Synonym(s)=OsBBX30%2C BBX30;Oryzabase Gene Name Synonym(s)=B-box-containing protein 30;Note=Similar to CONSTANS-LIKE a.;Transcript_evidence=AK067820 (DDBJ%2C Best hit);ORF_evidence=B6TH99 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C B-box (IPR000315),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J013117D12;Oryzabase=11660;Expression=AK067820;TENOR=Os12t0209200-01;KEGG=Os12t0209200-01
Chr12	irgsp1_rep	five_prime_UTR	5699790	5699852	.	+	.	Parent=Os12t0209200-01
Chr12	irgsp1_rep	CDS	5699853	5700062	.	+	0	Parent=Os12t0209200-01
Chr12	irgsp1_rep	CDS	5701895	5702317	.	+	0	Parent=Os12t0209200-01
Chr12	irgsp1_rep	three_prime_UTR	5702318	5702413	.	+	.	Parent=Os12t0209200-01
Chr12	irgsp1_rep	mRNA	5703041	5708215	.	-	.	ID=Os12t0209300-00;Name=Os12t0209300-00;Locus_id=Os12g0209300;Note=Similar to ATPase%2C AAA family protein.;Transcript_evidence=AK371216 (DDBJ);ORF_evidence=Q53M12 (UniProt);GO=Biological Process: DNA replication (GO:0006260),Cellular Component: DNA polymerase III complex (GO:0009360),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed DNA polymerase activity (GO:0003887),Molecular Function: ATP binding (GO:0005524);InterPro=ATPase%2C AAA-type%2C core (IPR003959),DNA polymerase III%2C clamp loader complex%2C gamma/delta/delta subunit%2C C-terminal (IPR008921),DNA polymerase III%2C subunit gamma/ tau (IPR012763),DNA polymerase III%2C gamma subunit%2C domain III (IPR022754);TENOR=Os12t0209300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	5708209	5708215	.	-	.	Parent=Os12t0209300-00
Chr12	irgsp1_rep	CDS	5706304	5708208	.	-	0	Parent=Os12t0209300-00
Chr12	irgsp1_rep	CDS	5705655	5705874	.	-	0	Parent=Os12t0209300-00
Chr12	irgsp1_rep	CDS	5704911	5705477	.	-	2	Parent=Os12t0209300-00
Chr12	irgsp1_rep	CDS	5703494	5704217	.	-	2	Parent=Os12t0209300-00
Chr12	irgsp1_rep	CDS	5703041	5703125	.	-	1	Parent=Os12t0209300-00
Chr12	irgsp1_rep	mRNA	5709600	5712948	.	-	.	ID=Os12t0209502-01;Name=Os12t0209502-01;Locus_id=Os12g0209502;Note=Hypothetical gene.;Transcript_evidence=AK289026 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090090K24;TENOR=Os12t0209502-01;KEGG=Os12t0209502-01
Chr12	irgsp1_rep	five_prime_UTR	5712002	5712948	.	-	.	Parent=Os12t0209502-01
Chr12	irgsp1_rep	CDS	5711753	5712001	.	-	0	Parent=Os12t0209502-01
Chr12	irgsp1_rep	three_prime_UTR	5709600	5711752	.	-	.	Parent=Os12t0209502-01
Chr12	irgsp1_rep	mRNA	5736998	5739519	.	+	.	ID=Os12t0209700-01;Name=Os12t0209700-01;Locus_id=Os12g0209700;Oryzabase Gene Symbol Synonym(s)=OsRFP;Oryzabase Gene Name Synonym(s)=RING finger protein;Note=Hypothetical conserved gene.;Transcript_evidence=AK288614 (DDBJ%2C Best hit);ORF_evidence=NP_001066395.2 (RefSeq);NIAS_FLcDNA=J090053M04;Oryzabase=21171;TENOR=Os12t0209700-01;KEGG=Os12t0209700-01
Chr12	irgsp1_rep	five_prime_UTR	5736998	5736999	.	+	.	Parent=Os12t0209700-01
Chr12	irgsp1_rep	CDS	5737000	5737275	.	+	0	Parent=Os12t0209700-01
Chr12	irgsp1_rep	CDS	5737384	5737458	.	+	0	Parent=Os12t0209700-01
Chr12	irgsp1_rep	CDS	5737616	5738105	.	+	0	Parent=Os12t0209700-01
Chr12	irgsp1_rep	CDS	5738376	5739010	.	+	2	Parent=Os12t0209700-01
Chr12	irgsp1_rep	CDS	5739167	5739379	.	+	0	Parent=Os12t0209700-01
Chr12	irgsp1_rep	three_prime_UTR	5739380	5739519	.	+	.	Parent=Os12t0209700-01
Chr12	irgsp1_rep	mRNA	5740543	5747593	.	-	.	ID=Os12t0209800-01;Name=Os12t0209800-01;Locus_id=Os12g0209800;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=AK059152 (DDBJ%2C Best hit);ORF_evidence=Q2QW36 (UniProt);NIAS_FLcDNA=001-023-B11;TENOR=Os12t0209800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	5747593	5747593	.	-	.	Parent=Os12t0209800-01
Chr12	irgsp1_rep	CDS	5747103	5747592	.	-	0	Parent=Os12t0209800-01
Chr12	irgsp1_rep	CDS	5746762	5746835	.	-	2	Parent=Os12t0209800-01
Chr12	irgsp1_rep	three_prime_UTR	5746741	5746761	.	-	.	Parent=Os12t0209800-01
Chr12	irgsp1_rep	three_prime_UTR	5741059	5741204	.	-	.	Parent=Os12t0209800-01
Chr12	irgsp1_rep	three_prime_UTR	5740543	5740879	.	-	.	Parent=Os12t0209800-01
Chr12	irgsp1_rep	mRNA	5749555	5750951	.	-	.	ID=Os12t0209901-01;Name=Os12t0209901-01;Locus_id=Os12g0209901;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=AK060643 (DDBJ%2C Best hit);ORF_evidence=Q2QW36 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=001-027-G01;TENOR=Os12t0209901-01;KEGG=Os12t0209901-01
Chr12	irgsp1_rep	five_prime_UTR	5750950	5750951	.	-	.	Parent=Os12t0209901-01
Chr12	irgsp1_rep	CDS	5749555	5750949	.	-	0	Parent=Os12t0209901-01
Chr12	irgsp1_rep	mRNA	5752504	5754821	.	-	.	ID=Os12t0210000-01;Name=Os12t0210000-01;Locus_id=Os12g0210000;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=AK103318 (DDBJ%2C Best hit);ORF_evidence=Q2QW36 (UniProt);NIAS_FLcDNA=J033125I08;Expression=AK103318;TENOR=Os12t0210000-01;KEGG=Os12t0210000-01
Chr12	irgsp1_rep	five_prime_UTR	5753010	5754821	.	-	.	Parent=Os12t0210000-01
Chr12	irgsp1_rep	CDS	5752779	5753009	.	-	0	Parent=Os12t0210000-01
Chr12	irgsp1_rep	three_prime_UTR	5752504	5752778	.	-	.	Parent=Os12t0210000-01
Chr12	irgsp1_rep	mRNA	5756479	5760022	.	+	.	ID=Os12t0210200-01;Name=Os12t0210200-01;Locus_id=Os12g0210200;RAP-DB Gene Symbol Synonym(s)=OsGSTZ1;CGSNL Gene Symbol=GSTZ1;CGSNL Gene Name=ZETA GLUTATHIONE S-TRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=OsGSTZ1%2C GSTZ-1;Oryzabase Gene Name Synonym(s)=glutathine S-transferase1%2C glutathine S-transferase 1%2C Glutathione S-transferase (GSTZ)-1%2C Glutathione S-transferase-1;Note=Zeta class glutathione transferase;Transcript_evidence=AK069105;ORF_evidence=Q9FUE1;GO=Biological Process: aromatic amino acid family metabolic process (GO:0009072),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein binding (GO:0005515),Cellular Component: cytoplasm (GO:0005737);InterPro=Thioredoxin-like superfamily (IPR036249),Glutathione S-transferase%2C C-terminal domain superfamily (IPR036282),Glutathione Transferase family (IPR040079),Glutathione S-transferases%2C class Zeta (IPR005955),Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferases%2C class Zeta %2C N-terminal (IPR034333),Glutathione S-transferase%2C C-terminal-like (IPR010987),Glutathione S-transferases%2C class Zeta %2C C-terminal (IPR034330),Glutathione S-transferase%2C C-terminal (IPR004046);NIAS_FLcDNA=J023004I03;Manual Curation=September 24%2C 2020;Literature_PMID=21281270;Oryzabase=2871;Expression=AK069105;TENOR=Os12t0210200-01;KEGG=Os12t0210200-01 (EC:2.5.1.18%2C EC:5.2.1.2)
Chr12	irgsp1_rep	five_prime_UTR	5756479	5756523	.	+	.	Parent=Os12t0210200-01
Chr12	irgsp1_rep	CDS	5756524	5756614	.	+	0	Parent=Os12t0210200-01
Chr12	irgsp1_rep	CDS	5757326	5757367	.	+	2	Parent=Os12t0210200-01
Chr12	irgsp1_rep	CDS	5757831	5757916	.	+	2	Parent=Os12t0210200-01
Chr12	irgsp1_rep	CDS	5758009	5758080	.	+	0	Parent=Os12t0210200-01
Chr12	irgsp1_rep	CDS	5758296	5758349	.	+	0	Parent=Os12t0210200-01
Chr12	irgsp1_rep	CDS	5758451	5758526	.	+	0	Parent=Os12t0210200-01
Chr12	irgsp1_rep	CDS	5758766	5758827	.	+	2	Parent=Os12t0210200-01
Chr12	irgsp1_rep	CDS	5759120	5759179	.	+	0	Parent=Os12t0210200-01
Chr12	irgsp1_rep	CDS	5759294	5759395	.	+	0	Parent=Os12t0210200-01
Chr12	irgsp1_rep	three_prime_UTR	5759396	5759430	.	+	.	Parent=Os12t0210200-01
Chr12	irgsp1_rep	three_prime_UTR	5759569	5760022	.	+	.	Parent=Os12t0210200-01
Chr12	irgsp1_rep	mRNA	5760537	5763699	.	+	.	ID=Os12t0210300-01;Name=Os12t0210300-01;Locus_id=Os12g0210300;RAP-DB Gene Symbol Synonym(s)=OsGSTZ2;CGSNL Gene Symbol=GSTZ2;CGSNL Gene Name=ZETA GLUTATHIONE S-TRANSFERASE 2;Oryzabase Gene Symbol Synonym(s)=OsGSTZ2%2C GSTZ-2;Oryzabase Gene Name Synonym(s)=glutathione S-transferase2%2C glutathione S-transferase 2%2C Glutathione S-transferase (GSTZ)-2%2C Glutathione S-transferase-2%2C glutathione transferase Z2;Note=Zeta class glutathione transferase%2C Cold tolerance;Transcript_evidence=AK065921;ORF_evidence=Q945X3;GO=Biological Process: aromatic amino acid family metabolic process (GO:0009072),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein binding (GO:0005515),Cellular Component: cytoplasm (GO:0005737);InterPro=Thioredoxin-like superfamily (IPR036249),Glutathione S-transferase%2C C-terminal domain superfamily (IPR036282),Glutathione Transferase family (IPR040079),Glutathione S-transferases%2C class Zeta (IPR005955),Glutathione S-transferase%2C N-terminal (IPR004045),Glutathione S-transferase%2C C-terminal-like (IPR010987),Glutathione S-transferases%2C class Zeta %2C C-terminal (IPR034330),Glutathione S-transferase%2C C-terminal (IPR004046);NIAS_FLcDNA=J013048G20;Manual Curation=September 24%2C 2020;Literature_PMID=21281270;Oryzabase=2872;Expression=AK065921;TENOR=Os12t0210300-01;KEGG=Os12t0210300-01 (EC:2.5.1.18%2C EC:5.2.1.2)
Chr12	irgsp1_rep	five_prime_UTR	5760537	5760641	.	+	.	Parent=Os12t0210300-01
Chr12	irgsp1_rep	CDS	5760642	5760723	.	+	0	Parent=Os12t0210300-01
Chr12	irgsp1_rep	CDS	5761248	5761292	.	+	2	Parent=Os12t0210300-01
Chr12	irgsp1_rep	CDS	5761691	5761776	.	+	2	Parent=Os12t0210300-01
Chr12	irgsp1_rep	CDS	5761889	5761960	.	+	0	Parent=Os12t0210300-01
Chr12	irgsp1_rep	CDS	5762211	5762264	.	+	0	Parent=Os12t0210300-01
Chr12	irgsp1_rep	CDS	5762386	5762461	.	+	0	Parent=Os12t0210300-01
Chr12	irgsp1_rep	CDS	5762779	5762840	.	+	2	Parent=Os12t0210300-01
Chr12	irgsp1_rep	CDS	5763175	5763234	.	+	0	Parent=Os12t0210300-01
Chr12	irgsp1_rep	CDS	5763332	5763433	.	+	0	Parent=Os12t0210300-01
Chr12	irgsp1_rep	three_prime_UTR	5763434	5763699	.	+	.	Parent=Os12t0210300-01
Chr12	irgsp1_rep	mRNA	5766036	5773224	.	+	.	ID=Os12t0210400-01;Name=Os12t0210400-01;Locus_id=Os12g0210400;CGSNL Gene Symbol=LRR-RLK2;Oryzabase Gene Symbol Synonym(s)=OsLRR-RLK2;Oryzabase Gene Name Synonym(s)=leucine-rich repeat and receptor-like kinase domain protein 2;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK068774 (DDBJ%2C Best hit);ORF_evidence=XP_002864014.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441);NIAS_FLcDNA=J013159D03;Oryzabase=23494;Expression=AK068774;TENOR=Os12t0210400-01;KEGG=Os12t0210400-01
Chr12	irgsp1_rep	five_prime_UTR	5766036	5766154	.	+	.	Parent=Os12t0210400-01
Chr12	irgsp1_rep	CDS	5766155	5766242	.	+	0	Parent=Os12t0210400-01
Chr12	irgsp1_rep	CDS	5766330	5766450	.	+	2	Parent=Os12t0210400-01
Chr12	irgsp1_rep	CDS	5766534	5766605	.	+	1	Parent=Os12t0210400-01
Chr12	irgsp1_rep	CDS	5766729	5766803	.	+	1	Parent=Os12t0210400-01
Chr12	irgsp1_rep	CDS	5766881	5766952	.	+	1	Parent=Os12t0210400-01
Chr12	irgsp1_rep	CDS	5767710	5767871	.	+	1	Parent=Os12t0210400-01
Chr12	irgsp1_rep	CDS	5767964	5768038	.	+	1	Parent=Os12t0210400-01
Chr12	irgsp1_rep	CDS	5768134	5768205	.	+	1	Parent=Os12t0210400-01
Chr12	irgsp1_rep	CDS	5768290	5768364	.	+	1	Parent=Os12t0210400-01
Chr12	irgsp1_rep	CDS	5768462	5768530	.	+	1	Parent=Os12t0210400-01
Chr12	irgsp1_rep	CDS	5768641	5768718	.	+	1	Parent=Os12t0210400-01
Chr12	irgsp1_rep	CDS	5768840	5768911	.	+	1	Parent=Os12t0210400-01
Chr12	irgsp1_rep	CDS	5769031	5769162	.	+	1	Parent=Os12t0210400-01
Chr12	irgsp1_rep	CDS	5769431	5769921	.	+	1	Parent=Os12t0210400-01
Chr12	irgsp1_rep	CDS	5770316	5770477	.	+	2	Parent=Os12t0210400-01
Chr12	irgsp1_rep	CDS	5770571	5770710	.	+	2	Parent=Os12t0210400-01
Chr12	irgsp1_rep	CDS	5770819	5771038	.	+	0	Parent=Os12t0210400-01
Chr12	irgsp1_rep	CDS	5771399	5771634	.	+	2	Parent=Os12t0210400-01
Chr12	irgsp1_rep	CDS	5772561	5773052	.	+	0	Parent=Os12t0210400-01
Chr12	irgsp1_rep	three_prime_UTR	5773053	5773224	.	+	.	Parent=Os12t0210400-01
Chr12	irgsp1_rep	mRNA	5772511	5773053	.	-	.	ID=Os12t0210450-00;Name=Os12t0210450-00;Locus_id=Os12g0210450;Note=Hypothetical gene.;Transcript_evidence=EU947771 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0210450-00
Chr12	irgsp1_rep	five_prime_UTR	5773053	5773053	.	-	.	Parent=Os12t0210450-00
Chr12	irgsp1_rep	CDS	5772511	5773052	.	-	0	Parent=Os12t0210450-00
Chr12	irgsp1_rep	mRNA	5775580	5776811	.	-	.	ID=Os12t0210500-00;Name=Os12t0210500-00;Locus_id=Os12g0210500;Note=Conserved hypothetical protein.;Transcript_evidence=FP099967 (DDBJ);ORF_evidence=B9GCD3 (UniProt);TENOR=Os12t0210500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	5776463	5776811	.	-	.	Parent=Os12t0210500-00
Chr12	irgsp1_rep	CDS	5776457	5776462	.	-	0	Parent=Os12t0210500-00
Chr12	irgsp1_rep	CDS	5775710	5776225	.	-	0	Parent=Os12t0210500-00
Chr12	irgsp1_rep	three_prime_UTR	5775580	5775709	.	-	.	Parent=Os12t0210500-00
Chr12	irgsp1_rep	mRNA	5786606	5786966	.	-	.	ID=Os12t0210601-00;Name=Os12t0210601-00;Locus_id=Os12g0210601;Note=Hypothetical conserved gene.;Transcript_evidence=CT835826 (DDBJ%2C Secondary hit);ORF_evidence=B9G4Z5 (UniProt);Oryzabase=22522;TENOR=Os12t0210601-00;KEGG=Os12t0210601-00
Chr12	irgsp1_rep	five_prime_UTR	5786966	5786966	.	-	.	Parent=Os12t0210601-00
Chr12	irgsp1_rep	CDS	5786744	5786965	.	-	0	Parent=Os12t0210601-00
Chr12	irgsp1_rep	three_prime_UTR	5786606	5786743	.	-	.	Parent=Os12t0210601-00
Chr12	irgsp1_rep	mRNA	5801534	5807232	.	+	.	ID=Os12t0210800-01;Name=Os12t0210800-01;Locus_id=Os12g0210800;Note=Similar to 3-deoxy-D-manno-2-octulosonic acid-8-phosphate (EC 4.1.2.16) (Fragment).;Transcript_evidence=AK072548 (DDBJ%2C Best hit);ORF_evidence=B4F7V1 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Biological Process: biosynthetic process (GO:0009058),Cellular Component: cytoplasm (GO:0005737),Molecular Function: catalytic activity (GO:0003824),Molecular Function: 3-deoxy-8-phosphooctulonate synthase activity (GO:0008676);InterPro=DAHP synthetase I/KDSA (IPR006218),3-deoxy-8-phosphooctulonate synthase (IPR006269),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J023126L03;Expression=AK072548;TENOR=Os12t0210800-01;KEGG=Os12t0210800-01 (EC:2.5.1.55%2C EC:4.1.2.16)
Chr12	irgsp1_rep	five_prime_UTR	5801534	5801740	.	+	.	Parent=Os12t0210800-01
Chr12	irgsp1_rep	CDS	5801741	5801779	.	+	0	Parent=Os12t0210800-01
Chr12	irgsp1_rep	CDS	5802690	5802787	.	+	0	Parent=Os12t0210800-01
Chr12	irgsp1_rep	CDS	5802869	5802965	.	+	1	Parent=Os12t0210800-01
Chr12	irgsp1_rep	CDS	5803452	5803517	.	+	0	Parent=Os12t0210800-01
Chr12	irgsp1_rep	CDS	5804045	5804104	.	+	0	Parent=Os12t0210800-01
Chr12	irgsp1_rep	CDS	5804224	5804298	.	+	0	Parent=Os12t0210800-01
Chr12	irgsp1_rep	CDS	5804914	5804998	.	+	0	Parent=Os12t0210800-01
Chr12	irgsp1_rep	CDS	5805554	5805612	.	+	2	Parent=Os12t0210800-01
Chr12	irgsp1_rep	CDS	5806162	5806206	.	+	0	Parent=Os12t0210800-01
Chr12	irgsp1_rep	CDS	5806491	5806589	.	+	0	Parent=Os12t0210800-01
Chr12	irgsp1_rep	CDS	5806714	5806761	.	+	0	Parent=Os12t0210800-01
Chr12	irgsp1_rep	CDS	5806885	5806932	.	+	0	Parent=Os12t0210800-01
Chr12	irgsp1_rep	CDS	5807009	5807065	.	+	0	Parent=Os12t0210800-01
Chr12	irgsp1_rep	three_prime_UTR	5807066	5807232	.	+	.	Parent=Os12t0210800-01
Chr12	irgsp1_rep	mRNA	5803965	5805865	.	+	.	ID=Os12t0210800-02;Name=Os12t0210800-02;Locus_id=Os12g0210800;Note=Similar to 2-dehydro-3-deoxyphosphooctonate aldolase.;Transcript_evidence=AK064518 (DDBJ%2C Best hit);ORF_evidence=B4F7V1 (UniProt);NIAS_FLcDNA=002-111-F09;Expression=AK064518;TENOR=Os12t0210800-02;KEGG=Os12t0210800-02
Chr12	irgsp1_rep	five_prime_UTR	5803965	5804044	.	+	.	Parent=Os12t0210800-02
Chr12	irgsp1_rep	CDS	5804045	5804236	.	+	0	Parent=Os12t0210800-02
Chr12	irgsp1_rep	three_prime_UTR	5804237	5805865	.	+	.	Parent=Os12t0210800-02
Chr12	irgsp1_rep	mRNA	5817169	5819154	.	+	.	ID=Os12t0211000-01;Name=Os12t0211000-01;Locus_id=Os12g0211000;Note=Conserved hypothetical protein.;Transcript_evidence=AK101792 (DDBJ%2C Best hit);ORF_evidence=B8BNN0 (UniProt);NIAS_FLcDNA=J033065K09;Expression=AK101792;TENOR=Os12t0211000-01;KEGG=Os12t0211000-01
Chr12	irgsp1_rep	five_prime_UTR	5817169	5817194	.	+	.	Parent=Os12t0211000-01
Chr12	irgsp1_rep	CDS	5817195	5817531	.	+	0	Parent=Os12t0211000-01
Chr12	irgsp1_rep	CDS	5818096	5818922	.	+	2	Parent=Os12t0211000-01
Chr12	irgsp1_rep	three_prime_UTR	5818923	5819154	.	+	.	Parent=Os12t0211000-01
Chr12	irgsp1_rep	mRNA	5824939	5827172	.	+	.	ID=Os12t0211100-01;Name=Os12t0211100-01;Locus_id=Os12g0211100;Note=Conserved hypothetical protein.;Transcript_evidence=AK288774 (DDBJ%2C Best hit);ORF_evidence=B9GCD7 (UniProt);NIAS_FLcDNA=J090068E11;TENOR=Os12t0211100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	5824939	5826389	.	+	.	Parent=Os12t0211100-01
Chr12	irgsp1_rep	CDS	5826390	5826848	.	+	0	Parent=Os12t0211100-01
Chr12	irgsp1_rep	three_prime_UTR	5826849	5827172	.	+	.	Parent=Os12t0211100-01
Chr12	irgsp1_rep	mRNA	5838245	5840113	.	+	.	ID=Os12t0211301-00;Name=Os12t0211301-00;Locus_id=Os12g0211301;Note=Hypothetical conserved gene.;Transcript_evidence=tplb0019c01 (Wheat FLcDNA);ORF_evidence=Q2QW23 (UniProt);TENOR=Os12t0211301-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	5838245	5838466	.	+	.	Parent=Os12t0211301-00
Chr12	irgsp1_rep	five_prime_UTR	5839415	5839505	.	+	.	Parent=Os12t0211301-00
Chr12	irgsp1_rep	CDS	5839506	5839910	.	+	0	Parent=Os12t0211301-00
Chr12	irgsp1_rep	three_prime_UTR	5839911	5839933	.	+	.	Parent=Os12t0211301-00
Chr12	irgsp1_rep	three_prime_UTR	5840012	5840113	.	+	.	Parent=Os12t0211301-00
Chr12	irgsp1_rep	mRNA	5849738	5852392	.	+	.	ID=Os12t0211400-00;Name=Os12t0211400-00;Locus_id=Os12g0211400;Note=A/G-specific adenine glycosylase MutY%2C bacterial form domain containing protein.;Transcript_evidence=tplb0019c01 (Wheat FLcDNA);ORF_evidence=NP_001150481.1 (RefSeq);GO=Biological Process: DNA repair (GO:0006281),Biological Process: base-excision repair (GO:0006284),Molecular Function: catalytic activity (GO:0003824),Molecular Function: endonuclease activity (GO:0004519),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: 4 iron%2C 4 sulfur cluster binding (GO:0051539);InterPro=NUDIX hydrolase domain (IPR000086),HhH-GPD domain (IPR003265),Endonuclease III-like%2C iron-sulphur cluster loop motif (IPR003651),Endonuclease III%2C iron-sulphur binding site (IPR004035),DNA glycosylase (IPR011257),NUDIX hydrolase domain-like (IPR015797),Helix-turn-helix%2C base-excision DNA repair%2C C-terminal (IPR023170);TENOR=Os12t0211400-00;KEGG=Os12t0211400-00 (EC:3.2.2.-)
Chr12	irgsp1_rep	five_prime_UTR	5849738	5849758	.	+	.	Parent=Os12t0211400-00
Chr12	irgsp1_rep	CDS	5849759	5850163	.	+	0	Parent=Os12t0211400-00
Chr12	irgsp1_rep	CDS	5850283	5850342	.	+	0	Parent=Os12t0211400-00
Chr12	irgsp1_rep	CDS	5850804	5850920	.	+	0	Parent=Os12t0211400-00
Chr12	irgsp1_rep	CDS	5851014	5851111	.	+	0	Parent=Os12t0211400-00
Chr12	irgsp1_rep	CDS	5851471	5852021	.	+	1	Parent=Os12t0211400-00
Chr12	irgsp1_rep	CDS	5852119	5852222	.	+	2	Parent=Os12t0211400-00
Chr12	irgsp1_rep	CDS	5852299	5852388	.	+	0	Parent=Os12t0211400-00
Chr12	irgsp1_rep	three_prime_UTR	5852389	5852392	.	+	.	Parent=Os12t0211400-00
Chr12	irgsp1_rep	mRNA	5856248	5859276	.	-	.	ID=Os12t0211500-01;Name=Os12t0211500-01;Locus_id=Os12g0211500;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=AK103606 (DDBJ%2C Best hit);ORF_evidence=Q2QW19 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J033133H08;TENOR=Os12t0211500-01
Chr12	irgsp1_rep	five_prime_UTR	5859265	5859276	.	-	.	Parent=Os12t0211500-01
Chr12	irgsp1_rep	CDS	5856248	5859264	.	-	0	Parent=Os12t0211500-01
Chr12	irgsp1_rep	mRNA	5857510	5859621	.	+	.	ID=Os12t0211600-01;Name=Os12t0211600-01;Locus_id=Os12g0211600;Note=Hypothetical protein.;Transcript_evidence=AK106666 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=002-113-H07;Expression=AK106666;TENOR=Os12t0211600-01;KEGG=Os12t0211600-01
Chr12	irgsp1_rep	five_prime_UTR	5857510	5858059	.	+	.	Parent=Os12t0211600-01
Chr12	irgsp1_rep	CDS	5858060	5858359	.	+	0	Parent=Os12t0211600-01
Chr12	irgsp1_rep	three_prime_UTR	5858360	5859621	.	+	.	Parent=Os12t0211600-01
Chr12	irgsp1_rep	mRNA	5866457	5866924	.	-	.	ID=Os12t0211900-01;Name=Os12t0211900-01;Locus_id=Os12g0211900;Note=Hypothetical conserved gene.;Transcript_evidence=AK241752 (DDBJ%2C Best hit);ORF_evidence=Q2QW18 (UniProt);NIAS_FLcDNA=J065203N10;TENOR=Os12t0211900-01;KEGG=Os12t0211900-01
Chr12	irgsp1_rep	five_prime_UTR	5866901	5866924	.	-	.	Parent=Os12t0211900-01
Chr12	irgsp1_rep	CDS	5866709	5866900	.	-	0	Parent=Os12t0211900-01
Chr12	irgsp1_rep	three_prime_UTR	5866457	5866708	.	-	.	Parent=Os12t0211900-01
Chr12	irgsp1_rep	mRNA	5892605	5901801	.	+	.	ID=Os12t0212100-00;Name=Os12t0212100-00;Locus_id=Os12g0212100;Note=Similar to A/G-specific adenine DNA glycosylase.;Transcript_evidence=AK374656 (DDBJ);ORF_evidence=NP_001150481.1 (RefSeq);GO=Biological Process: DNA repair (GO:0006281),Biological Process: base-excision repair (GO:0006284),Cellular Component: intracellular (GO:0005622),Molecular Function: catalytic activity (GO:0003824),Molecular Function: endonuclease activity (GO:0004519),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: DNA N-glycosylase activity (GO:0019104);InterPro=NUDIX hydrolase domain (IPR000086),HhH-GPD domain (IPR003265),Endonuclease III%2C iron-sulphur binding site (IPR004035),A/G-specific adenine glycosylase MutY%2C bacterial form (IPR005760),DNA glycosylase (IPR011257),NUDIX hydrolase domain-like (IPR015797),Helix-turn-helix%2C base-excision DNA repair%2C C-terminal (IPR023170);TENOR=Os12t0212100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	5892605	5892621	.	+	.	Parent=Os12t0212100-00
Chr12	irgsp1_rep	CDS	5892622	5893023	.	+	0	Parent=Os12t0212100-00
Chr12	irgsp1_rep	CDS	5893145	5893204	.	+	0	Parent=Os12t0212100-00
Chr12	irgsp1_rep	CDS	5894598	5894714	.	+	0	Parent=Os12t0212100-00
Chr12	irgsp1_rep	CDS	5894815	5894909	.	+	0	Parent=Os12t0212100-00
Chr12	irgsp1_rep	CDS	5901054	5901801	.	+	1	Parent=Os12t0212100-00
Chr12	irgsp1_rep	mRNA	5905934	5907831	.	+	.	ID=Os12t0212400-01;Name=Os12t0212400-01;Locus_id=Os12g0212400;Note=Hypothetical protein.;Transcript_evidence=AK064245 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-105-B10;Expression=AK064245;TENOR=Os12t0212400-01;KEGG=Os12t0212400-01
Chr12	irgsp1_rep	five_prime_UTR	5905934	5907117	.	+	.	Parent=Os12t0212400-01
Chr12	irgsp1_rep	CDS	5907118	5907420	.	+	0	Parent=Os12t0212400-01
Chr12	irgsp1_rep	three_prime_UTR	5907421	5907831	.	+	.	Parent=Os12t0212400-01
Chr12	irgsp1_rep	mRNA	5959962	5960734	.	-	.	ID=Os12t0214700-01;Name=Os12t0214700-01;Locus_id=Os12g0214700;Note=Conserved hypothetical protein.;Transcript_evidence=AK243165 (DDBJ%2C Best hit);ORF_evidence=Q2QW02 (UniProt);NIAS_FLcDNA=J100034N16;TENOR=Os12t0214700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	5960420	5960734	.	-	0	Parent=Os12t0214700-01
Chr12	irgsp1_rep	three_prime_UTR	5960395	5960419	.	-	.	Parent=Os12t0214700-01
Chr12	irgsp1_rep	three_prime_UTR	5959962	5960304	.	-	.	Parent=Os12t0214700-01
Chr12	irgsp1_rep	mRNA	6059272	6062946	.	+	.	ID=Os12t0215100-00;Name=Os12t0215100-00;Locus_id=Os12g0215100;Note=Hypothetical conserved gene.;Transcript_evidence=AK109751 (DDBJ%2C Secondary hit);ORF_evidence=Q53NH3 (UniProt);Expression=AK109751;TENOR=Os12t0215100-00;KEGG=Os12t0215100-00
Chr12	irgsp1_rep	five_prime_UTR	6059272	6059276	.	+	.	Parent=Os12t0215100-00
Chr12	irgsp1_rep	CDS	6059277	6060170	.	+	0	Parent=Os12t0215100-00
Chr12	irgsp1_rep	three_prime_UTR	6060171	6060465	.	+	.	Parent=Os12t0215100-00
Chr12	irgsp1_rep	three_prime_UTR	6062303	6062946	.	+	.	Parent=Os12t0215100-00
Chr12	irgsp1_rep	mRNA	6130297	6130518	.	-	.	ID=Os12t0215800-00;Name=Os12t0215800-00;Locus_id=Os12g0215800;Note=Hypothetical protein.;Transcript_evidence=AF005089 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0215800-00
Chr12	irgsp1_rep	CDS	6130297	6130518	.	-	0	Parent=Os12t0215800-00
Chr12	irgsp1_rep	mRNA	6138572	6141905	.	-	.	ID=Os12t0215950-01;Name=Os12t0215950-01;Locus_id=Os12g0215950;Note=Similar to Leucine Rich Repeat family protein%2C expressed.;Transcript_evidence=AK241393 (DDBJ%2C Best hit);ORF_evidence=Q2QVW9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J065157M02;TENOR=Os12t0215950-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	6141905	6141905	.	-	.	Parent=Os12t0215950-01
Chr12	irgsp1_rep	CDS	6138866	6141904	.	-	0	Parent=Os12t0215950-01
Chr12	irgsp1_rep	three_prime_UTR	6138572	6138865	.	-	.	Parent=Os12t0215950-01
Chr12	irgsp1_rep	mRNA	6140537	6142124	.	+	.	ID=Os12t0216000-01;Name=Os12t0216000-01;Locus_id=Os12g0216000;Note=Hypothetical protein.;Transcript_evidence=AK105304 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-117-A10;Expression=AK105304;TENOR=Os12t0216000-01;KEGG=Os12t0216000-01
Chr12	irgsp1_rep	five_prime_UTR	6140537	6140702	.	+	.	Parent=Os12t0216000-01
Chr12	irgsp1_rep	CDS	6140703	6141023	.	+	0	Parent=Os12t0216000-01
Chr12	irgsp1_rep	three_prime_UTR	6141024	6142124	.	+	.	Parent=Os12t0216000-01
Chr12	irgsp1_rep	mRNA	6168271	6169490	.	-	.	ID=Os12t0216500-01;Name=Os12t0216500-01;Locus_id=Os12g0216500;Note=Hypothetical gene.;Transcript_evidence=AK061161 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=006-208-H12;Expression=AK061161;TENOR=Os12t0216500-01;KEGG=Os12t0216500-01
Chr12	irgsp1_rep	five_prime_UTR	6169489	6169490	.	-	.	Parent=Os12t0216500-01
Chr12	irgsp1_rep	CDS	6169246	6169488	.	-	0	Parent=Os12t0216500-01
Chr12	irgsp1_rep	three_prime_UTR	6169201	6169245	.	-	.	Parent=Os12t0216500-01
Chr12	irgsp1_rep	three_prime_UTR	6168271	6169051	.	-	.	Parent=Os12t0216500-01
Chr12	irgsp1_rep	mRNA	6224027	6228243	.	-	.	ID=Os12t0217300-01;Name=Os12t0217300-01;Locus_id=Os12g0217300;Note=Hypothetical protein.;Transcript_evidence=AK073101 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033007H20;Expression=AK073101;TENOR=Os12t0217300-01;KEGG=Os12t0217300-01
Chr12	irgsp1_rep	five_prime_UTR	6227903	6228243	.	-	.	Parent=Os12t0217300-01
Chr12	irgsp1_rep	five_prime_UTR	6227704	6227808	.	-	.	Parent=Os12t0217300-01
Chr12	irgsp1_rep	five_prime_UTR	6226376	6227619	.	-	.	Parent=Os12t0217300-01
Chr12	irgsp1_rep	CDS	6226261	6226375	.	-	0	Parent=Os12t0217300-01
Chr12	irgsp1_rep	CDS	6226056	6226128	.	-	2	Parent=Os12t0217300-01
Chr12	irgsp1_rep	CDS	6225726	6225975	.	-	1	Parent=Os12t0217300-01
Chr12	irgsp1_rep	three_prime_UTR	6224027	6225725	.	-	.	Parent=Os12t0217300-01
Chr12	irgsp1_rep	mRNA	6224005	6225304	.	-	.	ID=Os12t0217300-02;Name=Os12t0217300-02;Locus_id=Os12g0217300;Note=Hypothetical gene.;Transcript_evidence=AK064370 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-108-C11;Expression=AK064370;TENOR=Os12t0217300-02;KEGG=Os12t0217300-02
Chr12	irgsp1_rep	five_prime_UTR	6224962	6225304	.	-	.	Parent=Os12t0217300-02
Chr12	irgsp1_rep	CDS	6224680	6224961	.	-	0	Parent=Os12t0217300-02
Chr12	irgsp1_rep	three_prime_UTR	6224005	6224679	.	-	.	Parent=Os12t0217300-02
Chr12	irgsp1_rep	mRNA	6224187	6227225	.	+	.	ID=Os12t0217400-00;Name=Os12t0217400-00;Locus_id=Os12g0217400;Note=Similar to Leucine Rich Repeat family protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QVV6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);TENOR=Os12t0217400-00
Chr12	irgsp1_rep	CDS	6224187	6227225	.	+	0	Parent=Os12t0217400-00
Chr12	irgsp1_rep	mRNA	6259242	6259953	.	-	.	ID=Os12t0217800-01;Name=Os12t0217800-01;Locus_id=Os12g0217800;Note=Hypothetical gene.;Transcript_evidence=AK110664 (DDBJ%2C Best hit);ORF_evidence=NP_001176842.1 (RefSeq);NIAS_FLcDNA=002-169-F06;Expression=AK110664;TENOR=Os12t0217800-01;KEGG=Os12t0217800-01
Chr12	irgsp1_rep	five_prime_UTR	6259824	6259953	.	-	.	Parent=Os12t0217800-01
Chr12	irgsp1_rep	CDS	6259614	6259823	.	-	0	Parent=Os12t0217800-01
Chr12	irgsp1_rep	three_prime_UTR	6259242	6259613	.	-	.	Parent=Os12t0217800-01
Chr12	irgsp1_rep	mRNA	6301536	6302135	.	-	.	ID=Os12t0218100-01;Name=Os12t0218100-01;Locus_id=Os12g0218100;Note=Similar to cDNA%2C clone: J065028F04%2C full insert sequence.;Transcript_evidence=AK063190 (DDBJ%2C Best hit);ORF_evidence=A2ZJ27 (UniProt);NIAS_FLcDNA=001-112-B09;Expression=AK063190;TENOR=Os12t0218100-01;KEGG=Os12t0218100-01
Chr12	irgsp1_rep	five_prime_UTR	6302062	6302135	.	-	.	Parent=Os12t0218100-01
Chr12	irgsp1_rep	CDS	6301852	6302061	.	-	0	Parent=Os12t0218100-01
Chr12	irgsp1_rep	three_prime_UTR	6301536	6301851	.	-	.	Parent=Os12t0218100-01
Chr12	irgsp1_rep	mRNA	6324997	6325660	.	+	.	ID=Os12t0218300-01;Name=Os12t0218300-01;Locus_id=Os12g0218300;CGSNL Gene Symbol=RALF34;CGSNL Gene Name=RAPID ALKALIZATION FACTOR 34;Oryzabase Gene Symbol Synonym(s)=OsRALF-34%2C OsRALF34%2C RALF-34;Oryzabase Gene Name Synonym(s)=Rapid alkalization factor 34;Note=Conserved hypothetical protein.;Transcript_evidence=AK063060 (DDBJ%2C Best hit);ORF_evidence=NP_001066415.1 (RefSeq);NIAS_FLcDNA=001-110-F08;Oryzabase=21135;Expression=AK063060;TENOR=Os12t0218300-01;KEGG=Os12t0218300-01
Chr12	irgsp1_rep	five_prime_UTR	6324997	6325081	.	+	.	Parent=Os12t0218300-01
Chr12	irgsp1_rep	CDS	6325082	6325378	.	+	0	Parent=Os12t0218300-01
Chr12	irgsp1_rep	three_prime_UTR	6325379	6325660	.	+	.	Parent=Os12t0218300-01
Chr12	irgsp1_rep	mRNA	6343046	6344082	.	+	.	ID=Os12t0218500-01;Name=Os12t0218500-01;Locus_id=Os12g0218500;Note=Hypothetical conserved gene.;Transcript_evidence=AK241200 (DDBJ%2C Best hit),AK287912 (DDBJ%2C Best hit);ORF_evidence=NP_001176841.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);NIAS_FLcDNA=J065121L13,J065213D12;TENOR=Os12t0218500-01;KEGG=Os12t0218500-01
Chr12	irgsp1_rep	five_prime_UTR	6343046	6343047	.	+	.	Parent=Os12t0218500-01
Chr12	irgsp1_rep	CDS	6343048	6343956	.	+	0	Parent=Os12t0218500-01
Chr12	irgsp1_rep	three_prime_UTR	6343957	6344082	.	+	.	Parent=Os12t0218500-01
Chr12	irgsp1_rep	mRNA	6346481	6347146	.	-	.	ID=Os12t0218600-01;Name=Os12t0218600-01;Locus_id=Os12g0218600;Note=Hypothetical conserved gene.;Transcript_evidence=AK108959 (DDBJ%2C Best hit);ORF_evidence=Q2QVT7 (UniProt);NIAS_FLcDNA=002-153-D01;Expression=AK108959;TENOR=Os12t0218600-01;KEGG=Os12t0218600-01
Chr12	irgsp1_rep	five_prime_UTR	6347109	6347146	.	-	.	Parent=Os12t0218600-01
Chr12	irgsp1_rep	CDS	6346938	6347108	.	-	0	Parent=Os12t0218600-01
Chr12	irgsp1_rep	three_prime_UTR	6346481	6346937	.	-	.	Parent=Os12t0218600-01
Chr12	irgsp1_rep	mRNA	6344596	6347116	.	-	.	ID=Os12t0218600-02;Name=Os12t0218600-02;Locus_id=Os12g0218600;Note=Hypothetical gene.;Transcript_evidence=AK063658 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-119-B11;Expression=AK063658;TENOR=Os12t0218600-02;KEGG=Os12t0218600-02
Chr12	irgsp1_rep	five_prime_UTR	6347109	6347116	.	-	.	Parent=Os12t0218600-02
Chr12	irgsp1_rep	CDS	6346942	6347108	.	-	0	Parent=Os12t0218600-02
Chr12	irgsp1_rep	CDS	6344861	6344915	.	-	1	Parent=Os12t0218600-02
Chr12	irgsp1_rep	three_prime_UTR	6344596	6344860	.	-	.	Parent=Os12t0218600-02
Chr12	irgsp1_rep	mRNA	6354156	6354747	.	+	.	ID=Os12t0218800-01;Name=Os12t0218800-01;Locus_id=Os12g0218800;Note=Hypothetical protein.;Transcript_evidence=AK107720 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-132-E08;Expression=AK107720;TENOR=Os12t0218800-01;KEGG=Os12t0218800-01
Chr12	irgsp1_rep	five_prime_UTR	6354156	6354228	.	+	.	Parent=Os12t0218800-01
Chr12	irgsp1_rep	CDS	6354229	6354621	.	+	0	Parent=Os12t0218800-01
Chr12	irgsp1_rep	three_prime_UTR	6354622	6354747	.	+	.	Parent=Os12t0218800-01
Chr12	irgsp1_rep	mRNA	6425710	6426420	.	-	.	ID=Os12t0219700-01;Name=Os12t0219700-01;Locus_id=Os12g0219700;Note=Hypothetical protein.;Transcript_evidence=AK062524 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=001-104-D08;TENOR=Os12t0219700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	6426329	6426420	.	-	.	Parent=Os12t0219700-01
Chr12	irgsp1_rep	CDS	6425975	6426328	.	-	0	Parent=Os12t0219700-01
Chr12	irgsp1_rep	three_prime_UTR	6425710	6425974	.	-	.	Parent=Os12t0219700-01
Chr12	irgsp1_rep	mRNA	6437460	6439813	.	-	.	ID=Os12t0220001-01;Name=Os12t0220001-01;Locus_id=Os12g0220001;Note=Conserved hypothetical protein.;Transcript_evidence=AK289059 (DDBJ%2C Best hit);ORF_evidence=C8TFB7 (UniProt);NIAS_FLcDNA=J090093I21;TENOR=Os12t0220001-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	6437632	6439813	.	-	.	Parent=Os12t0220001-01
Chr12	irgsp1_rep	CDS	6437533	6437631	.	-	0	Parent=Os12t0220001-01
Chr12	irgsp1_rep	three_prime_UTR	6437460	6437532	.	-	.	Parent=Os12t0220001-01
Chr12	irgsp1_rep	mRNA	6489531	6490542	.	+	.	ID=Os12t0220800-01;Name=Os12t0220800-01;Locus_id=Os12g0220800;Note=Hypothetical protein.;Transcript_evidence=AK108124 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-139-D03;TENOR=Os12t0220800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	6489531	6490163	.	+	.	Parent=Os12t0220800-01
Chr12	irgsp1_rep	CDS	6490164	6490421	.	+	0	Parent=Os12t0220800-01
Chr12	irgsp1_rep	three_prime_UTR	6490422	6490542	.	+	.	Parent=Os12t0220800-01
Chr12	irgsp1_rep	mRNA	6489582	6490043	.	-	.	ID=Os12t0220833-00;Name=Os12t0220833-00;Locus_id=Os12g0220833;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os12t0220833-00;KEGG=Os12t0220833-00
Chr12	irgsp1_rep	CDS	6489582	6490043	.	-	0	Parent=Os12t0220833-00
Chr12	irgsp1_rep	mRNA	6506700	6510765	.	-	.	ID=Os12t0220866-00;Name=Os12t0220866-00;Locus_id=Os12g0220866;Note=Hypothetical gene.;Transcript_evidence=AK073101 (DDBJ%2C Secondary hit);ORF_evidence=GeneMark;Expression=AK073101;TENOR=Os12t0220866-00;KEGG=Os12t0220866-00
Chr12	irgsp1_rep	five_prime_UTR	6510458	6510765	.	-	.	Parent=Os12t0220866-00
Chr12	irgsp1_rep	five_prime_UTR	6510260	6510363	.	-	.	Parent=Os12t0220866-00
Chr12	irgsp1_rep	five_prime_UTR	6508932	6510175	.	-	.	Parent=Os12t0220866-00
Chr12	irgsp1_rep	CDS	6508817	6508931	.	-	0	Parent=Os12t0220866-00
Chr12	irgsp1_rep	CDS	6508612	6508684	.	-	2	Parent=Os12t0220866-00
Chr12	irgsp1_rep	CDS	6508282	6508531	.	-	1	Parent=Os12t0220866-00
Chr12	irgsp1_rep	three_prime_UTR	6506855	6508281	.	-	.	Parent=Os12t0220866-00
Chr12	irgsp1_rep	three_prime_UTR	6506700	6506843	.	-	.	Parent=Os12t0220866-00
Chr12	irgsp1_rep	mRNA	6563411	6564155	.	-	.	ID=Os12t0221400-01;Name=Os12t0221400-01;Locus_id=Os12g0221400;Note=Similar to cDNA clone:001-112-B09%2C full insert sequence.;Transcript_evidence=AK240884 (DDBJ%2C Best hit);ORF_evidence=Q2QVU5 (UniProt);NIAS_FLcDNA=J065028F04;TENOR=Os12t0221400-01;KEGG=Os12t0221400-01
Chr12	irgsp1_rep	five_prime_UTR	6564093	6564155	.	-	.	Parent=Os12t0221400-01
Chr12	irgsp1_rep	CDS	6563886	6564092	.	-	0	Parent=Os12t0221400-01
Chr12	irgsp1_rep	three_prime_UTR	6563411	6563885	.	-	.	Parent=Os12t0221400-01
Chr12	irgsp1_rep	mRNA	6576304	6576780	.	-	.	ID=Os12t0221501-01;Name=Os12t0221501-01;Locus_id=Os12g0221501;Note=Non-protein coding transcript.;Transcript_evidence=AK243097 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J100024H09;TENOR=Os12t0221501-01
Chr12	irgsp1_rep	exon	6576304	6576780	.	-	.	Parent=Os12t0221501-01
Chr12	irgsp1_rep	mRNA	6576372	6577029	.	+	.	ID=Os12t0221600-01;Name=Os12t0221600-01;Locus_id=Os12g0221600;CGSNL Gene Symbol=RALF35;CGSNL Gene Name=RAPID ALKALIZATION FACTOR 35;Oryzabase Gene Symbol Synonym(s)=OsRALF-35%2C OsRALF35%2C RALF-35;Oryzabase Gene Name Synonym(s)=Rapid alkalization factor 35;Note=Conserved hypothetical protein.;Transcript_evidence=AK062469 (DDBJ%2C Best hit);ORF_evidence=A2ZJ28 (UniProt);NIAS_FLcDNA=001-103-E06;Oryzabase=21136;Expression=AK062469;TENOR=Os12t0221600-01;KEGG=Os12t0221600-01
Chr12	irgsp1_rep	five_prime_UTR	6576372	6576491	.	+	.	Parent=Os12t0221600-01
Chr12	irgsp1_rep	CDS	6576492	6576782	.	+	0	Parent=Os12t0221600-01
Chr12	irgsp1_rep	three_prime_UTR	6576783	6577029	.	+	.	Parent=Os12t0221600-01
Chr12	irgsp1_rep	mRNA	6585435	6586455	.	+	.	ID=Os12t0221700-00;Name=Os12t0221700-00;Locus_id=Os12g0221700;Note=Hypothetical conserved gene.;Transcript_evidence=AK241200 (DDBJ%2C Secondary hit);ORF_evidence=Q2QVQ5 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);TENOR=Os12t0221700-00;KEGG=Os12t0221700-00
Chr12	irgsp1_rep	five_prime_UTR	6585435	6585436	.	+	.	Parent=Os12t0221700-00
Chr12	irgsp1_rep	CDS	6585437	6586345	.	+	0	Parent=Os12t0221700-00
Chr12	irgsp1_rep	three_prime_UTR	6586346	6586455	.	+	.	Parent=Os12t0221700-00
Chr12	irgsp1_rep	mRNA	6625464	6626040	.	+	.	ID=Os12t0222300-01;Name=Os12t0222300-01;Locus_id=Os12g0222300;Note=Conserved hypothetical protein.;Transcript_evidence=AK107929 (DDBJ%2C Best hit);ORF_evidence=B9GCE8 (UniProt);NIAS_FLcDNA=002-134-H12;Expression=AK107929;TENOR=Os12t0222300-01;KEGG=Os12t0222300-01
Chr12	irgsp1_rep	five_prime_UTR	6625464	6625546	.	+	.	Parent=Os12t0222300-01
Chr12	irgsp1_rep	CDS	6625547	6625810	.	+	0	Parent=Os12t0222300-01
Chr12	irgsp1_rep	three_prime_UTR	6625811	6626040	.	+	.	Parent=Os12t0222300-01
Chr12	irgsp1_rep	mRNA	6643580	6644023	.	-	.	ID=Os12t0222650-01;Name=Os12t0222650-01;Locus_id=Os12g0222650;Note=Hypothetical gene.;Transcript_evidence=AK241578 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065181C07;TENOR=Os12t0222650-01;KEGG=Os12t0222650-01
Chr12	irgsp1_rep	five_prime_UTR	6643803	6644023	.	-	.	Parent=Os12t0222650-01
Chr12	irgsp1_rep	CDS	6643581	6643802	.	-	0	Parent=Os12t0222650-01
Chr12	irgsp1_rep	three_prime_UTR	6643580	6643580	.	-	.	Parent=Os12t0222650-01
Chr12	irgsp1_rep	mRNA	6647365	6650382	.	+	.	ID=Os12t0222800-00;Name=Os12t0222800-00;Locus_id=Os12g0222800;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QVP4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);TENOR=Os12t0222800-00;KEGG=Os12t0222800-00
Chr12	irgsp1_rep	CDS	6647365	6650382	.	+	0	Parent=Os12t0222800-00
Chr12	irgsp1_rep	mRNA	6650911	6654226	.	+	.	ID=Os12t0222900-01;Name=Os12t0222900-01;Locus_id=Os12g0222900;Note=Leucine-rich repeat%2C N-terminal domain containing protein.;Transcript_evidence=AK111528 (DDBJ%2C Best hit);ORF_evidence=Q2QVP4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);NIAS_FLcDNA=J013003G20;Expression=AK111528;TENOR=Os12t0222900-01;KEGG=Os12t0222900-01
Chr12	irgsp1_rep	five_prime_UTR	6650911	6650962	.	+	.	Parent=Os12t0222900-01
Chr12	irgsp1_rep	CDS	6650963	6654040	.	+	0	Parent=Os12t0222900-01
Chr12	irgsp1_rep	three_prime_UTR	6654041	6654226	.	+	.	Parent=Os12t0222900-01
Chr12	irgsp1_rep	mRNA	6652881	6655097	.	-	.	ID=Os12t0223000-01;Name=Os12t0223000-01;Locus_id=Os12g0223000;Note=Hypothetical protein.;Transcript_evidence=AK110855 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-172-C12;Expression=AK110855;TENOR=Os12t0223000-01;KEGG=Os12t0223000-01
Chr12	irgsp1_rep	five_prime_UTR	6654181	6655097	.	-	.	Parent=Os12t0223000-01
Chr12	irgsp1_rep	CDS	6653851	6654180	.	-	0	Parent=Os12t0223000-01
Chr12	irgsp1_rep	three_prime_UTR	6652881	6653850	.	-	.	Parent=Os12t0223000-01
Chr12	irgsp1_rep	mRNA	6677664	6679751	.	+	.	ID=Os12t0223300-01;Name=Os12t0223300-01;Locus_id=Os12g0223300;Note=Similar to Outer membrane cytoChrome b(5) (Fragment).;Transcript_evidence=AK060133 (DDBJ%2C Best hit);ORF_evidence=Q70ZZ5 (UniProt);GO=Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome b5 (IPR001199),CytoChrome b5%2C heme-binding site (IPR018506);NIAS_FLcDNA=006-309-C09;Expression=AK060133;TENOR=Os12t0223300-01;KEGG=Os12t0223300-01
Chr12	irgsp1_rep	five_prime_UTR	6677664	6677880	.	+	.	Parent=Os12t0223300-01
Chr12	irgsp1_rep	CDS	6677881	6677982	.	+	0	Parent=Os12t0223300-01
Chr12	irgsp1_rep	CDS	6678135	6678201	.	+	0	Parent=Os12t0223300-01
Chr12	irgsp1_rep	CDS	6679221	6679504	.	+	2	Parent=Os12t0223300-01
Chr12	irgsp1_rep	three_prime_UTR	6679505	6679751	.	+	.	Parent=Os12t0223300-01
Chr12	irgsp1_rep	mRNA	6677692	6679750	.	+	.	ID=Os12t0223300-02;Name=Os12t0223300-02;Locus_id=Os12g0223300;Note=Similar to CytoChrome b5.;Transcript_evidence=AK073017 (DDBJ%2C Best hit);ORF_evidence=Q70ZZ5 (UniProt);GO=Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome b5 (IPR001199);NIAS_FLcDNA=J033000L02;TENOR=Os12t0223300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	6677692	6677982	.	+	.	Parent=Os12t0223300-02
Chr12	irgsp1_rep	five_prime_UTR	6678135	6679207	.	+	.	Parent=Os12t0223300-02
Chr12	irgsp1_rep	CDS	6679208	6679504	.	+	0	Parent=Os12t0223300-02
Chr12	irgsp1_rep	three_prime_UTR	6679505	6679750	.	+	.	Parent=Os12t0223300-02
Chr12	irgsp1_rep	mRNA	6715421	6717177	.	+	.	ID=Os12t0223700-01;Name=Os12t0223700-01;Locus_id=Os12g0223700;Oryzabase Gene Name Synonym(s)=defensin family protein;Note=Conserved hypothetical protein.;Transcript_evidence=AK242305 (DDBJ%2C Best hit);ORF_evidence=NP_001066422.2 (RefSeq);NIAS_FLcDNA=J075193E23;Oryzabase=22728;TENOR=Os12t0223700-01;KEGG=Os12t0223700-01
Chr12	irgsp1_rep	five_prime_UTR	6715421	6715499	.	+	.	Parent=Os12t0223700-01
Chr12	irgsp1_rep	CDS	6715500	6715587	.	+	0	Parent=Os12t0223700-01
Chr12	irgsp1_rep	CDS	6716807	6716994	.	+	2	Parent=Os12t0223700-01
Chr12	irgsp1_rep	three_prime_UTR	6716995	6717177	.	+	.	Parent=Os12t0223700-01
Chr12	irgsp1_rep	mRNA	6729703	6731831	.	-	.	ID=Os12t0224000-01;Name=Os12t0224000-01;Locus_id=Os12g0224000;CGSNL Gene Symbol=DGK8;CGSNL Gene Name=DIACYLGLYCEROL KINASE 8;Oryzabase Gene Symbol Synonym(s)=OsDGK8;Oryzabase Gene Name Synonym(s)=Diacylglycerol kinase 8;Note=Similar to Diacylglycerol kinase 1 (EC 2.7.1.107) (Diglyceride kinase 1) (DGK 1) (DAG kinase 1).;Transcript_evidence=AK060284 (DDBJ%2C Best hit);ORF_evidence=NP_001078791.1 (RefSeq);GO=Biological Process: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway (GO:0007205),Molecular Function: diacylglycerol kinase activity (GO:0004143);InterPro=Diacylglycerol kinase%2C accessory domain (IPR000756);NIAS_FLcDNA=001-006-C01;Oryzabase=23316;Expression=AK060284;TENOR=Os12t0224000-01;KEGG=Os12t0224000-01 (EC:2.7.1.107)
Chr12	irgsp1_rep	five_prime_UTR	6731831	6731831	.	-	.	Parent=Os12t0224000-01
Chr12	irgsp1_rep	CDS	6731713	6731830	.	-	0	Parent=Os12t0224000-01
Chr12	irgsp1_rep	CDS	6731530	6731606	.	-	2	Parent=Os12t0224000-01
Chr12	irgsp1_rep	CDS	6731210	6731329	.	-	0	Parent=Os12t0224000-01
Chr12	irgsp1_rep	CDS	6730953	6731117	.	-	0	Parent=Os12t0224000-01
Chr12	irgsp1_rep	CDS	6730635	6730793	.	-	0	Parent=Os12t0224000-01
Chr12	irgsp1_rep	three_prime_UTR	6729703	6730634	.	-	.	Parent=Os12t0224000-01
Chr12	irgsp1_rep	mRNA	6754961	6756761	.	-	.	ID=Os12t0224400-01;Name=Os12t0224400-01;Locus_id=Os12g0224400;Note=Similar to Exostosin family protein%2C expressed.;Transcript_evidence=AK241334 (DDBJ%2C Best hit);ORF_evidence=Q2QVM7 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);NIAS_FLcDNA=J065144J16;TENOR=Os12t0224400-01;KEGG=Os12t0224400-01
Chr12	irgsp1_rep	CDS	6756310	6756761	.	-	0	Parent=Os12t0224400-01
Chr12	irgsp1_rep	CDS	6755798	6756227	.	-	1	Parent=Os12t0224400-01
Chr12	irgsp1_rep	CDS	6755105	6755725	.	-	0	Parent=Os12t0224400-01
Chr12	irgsp1_rep	three_prime_UTR	6754961	6755104	.	-	.	Parent=Os12t0224400-01
Chr12	irgsp1_rep	mRNA	6760060	6763030	.	-	.	ID=Os12t0224500-01;Name=Os12t0224500-01;Locus_id=Os12g0224500;Note=Zinc finger%2C PHD-type domain containing protein.;Transcript_evidence=AK063569 (DDBJ%2C Best hit),AK103802 (DDBJ%2C Best hit);ORF_evidence=B8BNP5 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=001-117-G03,J033146H17;Expression=AK063569;TENOR=Os12t0224500-01;KEGG=Os12t0224500-01
Chr12	irgsp1_rep	five_prime_UTR	6762846	6763030	.	-	.	Parent=Os12t0224500-01
Chr12	irgsp1_rep	CDS	6762723	6762845	.	-	0	Parent=Os12t0224500-01
Chr12	irgsp1_rep	CDS	6761920	6761966	.	-	0	Parent=Os12t0224500-01
Chr12	irgsp1_rep	CDS	6761674	6761797	.	-	1	Parent=Os12t0224500-01
Chr12	irgsp1_rep	CDS	6761483	6761581	.	-	0	Parent=Os12t0224500-01
Chr12	irgsp1_rep	CDS	6760943	6761190	.	-	0	Parent=Os12t0224500-01
Chr12	irgsp1_rep	CDS	6760749	6760838	.	-	1	Parent=Os12t0224500-01
Chr12	irgsp1_rep	CDS	6760359	6760665	.	-	1	Parent=Os12t0224500-01
Chr12	irgsp1_rep	three_prime_UTR	6760060	6760358	.	-	.	Parent=Os12t0224500-01
Chr12	irgsp1_rep	mRNA	6799622	6802817	.	-	.	ID=Os12t0225100-01;Name=Os12t0225100-01;Locus_id=Os12g0225100;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK059945 (DDBJ%2C Best hit);ORF_evidence=B6T390 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=006-210-G09;Expression=AK059945;TENOR=Os12t0225100-01;KEGG=Os12t0225100-01
Chr12	irgsp1_rep	CDS	6802719	6802817	.	-	0	Parent=Os12t0225100-01
Chr12	irgsp1_rep	CDS	6801386	6801433	.	-	0	Parent=Os12t0225100-01
Chr12	irgsp1_rep	CDS	6801236	6801304	.	-	0	Parent=Os12t0225100-01
Chr12	irgsp1_rep	CDS	6800607	6800747	.	-	0	Parent=Os12t0225100-01
Chr12	irgsp1_rep	CDS	6799917	6800291	.	-	0	Parent=Os12t0225100-01
Chr12	irgsp1_rep	three_prime_UTR	6799622	6799916	.	-	.	Parent=Os12t0225100-01
Chr12	irgsp1_rep	mRNA	6799607	6800188	.	-	.	ID=Os12t0225100-02;Name=Os12t0225100-02;Locus_id=Os12g0225100;Note=Similar to RNA binding protein.;Transcript_evidence=AK060450 (DDBJ%2C Best hit);ORF_evidence=B6T390 (UniProt);NIAS_FLcDNA=001-011-G03;TENOR=Os12t0225100-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	6800187	6800188	.	-	.	Parent=Os12t0225100-02
Chr12	irgsp1_rep	CDS	6799917	6800186	.	-	0	Parent=Os12t0225100-02
Chr12	irgsp1_rep	three_prime_UTR	6799607	6799916	.	-	.	Parent=Os12t0225100-02
Chr12	irgsp1_rep	mRNA	6799840	6807021	.	+	.	ID=Os12t0225150-00;Name=Os12t0225150-00;Locus_id=Os12g0225150;Note=Hypothetical protein.;Transcript_evidence=tplb0022j01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0225150-00
Chr12	irgsp1_rep	five_prime_UTR	6799840	6800093	.	+	.	Parent=Os12t0225150-00
Chr12	irgsp1_rep	CDS	6800094	6800293	.	+	0	Parent=Os12t0225150-00
Chr12	irgsp1_rep	CDS	6800611	6800739	.	+	1	Parent=Os12t0225150-00
Chr12	irgsp1_rep	CDS	6801232	6801253	.	+	1	Parent=Os12t0225150-00
Chr12	irgsp1_rep	three_prime_UTR	6801254	6801355	.	+	.	Parent=Os12t0225150-00
Chr12	irgsp1_rep	three_prime_UTR	6802717	6802830	.	+	.	Parent=Os12t0225150-00
Chr12	irgsp1_rep	three_prime_UTR	6802919	6803014	.	+	.	Parent=Os12t0225150-00
Chr12	irgsp1_rep	three_prime_UTR	6803280	6803408	.	+	.	Parent=Os12t0225150-00
Chr12	irgsp1_rep	three_prime_UTR	6803832	6803904	.	+	.	Parent=Os12t0225150-00
Chr12	irgsp1_rep	three_prime_UTR	6806447	6807021	.	+	.	Parent=Os12t0225150-00
Chr12	irgsp1_rep	mRNA	6811122	6815090	.	+	.	ID=Os12t0225200-01;Name=Os12t0225200-01;Locus_id=Os12g0225200;Note=Conserved hypothetical protein.;Transcript_evidence=AK288169 (DDBJ%2C Best hit);ORF_evidence=NP_001066426.1 (RefSeq);NIAS_FLcDNA=J090002N18;TENOR=Os12t0225200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	6811122	6811217	.	+	.	Parent=Os12t0225200-01
Chr12	irgsp1_rep	CDS	6811218	6811658	.	+	0	Parent=Os12t0225200-01
Chr12	irgsp1_rep	three_prime_UTR	6811659	6813873	.	+	.	Parent=Os12t0225200-01
Chr12	irgsp1_rep	three_prime_UTR	6813994	6814088	.	+	.	Parent=Os12t0225200-01
Chr12	irgsp1_rep	three_prime_UTR	6814517	6814637	.	+	.	Parent=Os12t0225200-01
Chr12	irgsp1_rep	three_prime_UTR	6814863	6815090	.	+	.	Parent=Os12t0225200-01
Chr12	irgsp1_rep	mRNA	6816937	6820419	.	-	.	ID=Os12t0225300-01;Name=Os12t0225300-01;Locus_id=Os12g0225300;Note=Hypothetical conserved gene.;Transcript_evidence=AK121853 (DDBJ%2C Best hit);ORF_evidence=A2ZJ47 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=FAR1 DNA binding domain (IPR004330),Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);NIAS_FLcDNA=J033101P07;Expression=AK121853;TENOR=Os12t0225300-01;KEGG=Os12t0225300-01
Chr12	irgsp1_rep	five_prime_UTR	6820179	6820419	.	-	.	Parent=Os12t0225300-01
Chr12	irgsp1_rep	five_prime_UTR	6820038	6820060	.	-	.	Parent=Os12t0225300-01
Chr12	irgsp1_rep	CDS	6817887	6820037	.	-	0	Parent=Os12t0225300-01
Chr12	irgsp1_rep	three_prime_UTR	6816937	6817886	.	-	.	Parent=Os12t0225300-01
Chr12	irgsp1_rep	mRNA	6815299	6820408	.	-	.	ID=Os12t0225300-02;Name=Os12t0225300-02;Locus_id=Os12g0225300;Note=FAR1 domain containing protein.;Transcript_evidence=AK102652 (DDBJ%2C Best hit);ORF_evidence=Q2QVL7 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=FAR1 DNA binding domain (IPR004330),Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);NIAS_FLcDNA=J033101E02;Expression=AK102652;TENOR=Os12t0225300-02;KEGG=Os12t0225300-02
Chr12	irgsp1_rep	five_prime_UTR	6820179	6820408	.	-	.	Parent=Os12t0225300-02
Chr12	irgsp1_rep	five_prime_UTR	6820038	6820060	.	-	.	Parent=Os12t0225300-02
Chr12	irgsp1_rep	CDS	6817901	6820037	.	-	0	Parent=Os12t0225300-02
Chr12	irgsp1_rep	CDS	6817198	6817205	.	-	2	Parent=Os12t0225300-02
Chr12	irgsp1_rep	three_prime_UTR	6817011	6817197	.	-	.	Parent=Os12t0225300-02
Chr12	irgsp1_rep	three_prime_UTR	6815299	6815865	.	-	.	Parent=Os12t0225300-02
Chr12	irgsp1_rep	mRNA	6816937	6820403	.	-	.	ID=Os12t0225300-03;Name=Os12t0225300-03;Locus_id=Os12g0225300;Note=FAR1 domain containing protein.;Transcript_evidence=AK065655 (DDBJ%2C Best hit);ORF_evidence=Q2QVL7 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=FAR1 DNA binding domain (IPR004330),Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);NIAS_FLcDNA=J013037J06;Expression=AK065655;TENOR=Os12t0225300-03;KEGG=Os12t0225300-03
Chr12	irgsp1_rep	five_prime_UTR	6820179	6820403	.	-	.	Parent=Os12t0225300-03
Chr12	irgsp1_rep	five_prime_UTR	6820038	6820060	.	-	.	Parent=Os12t0225300-03
Chr12	irgsp1_rep	CDS	6817901	6820037	.	-	0	Parent=Os12t0225300-03
Chr12	irgsp1_rep	CDS	6817198	6817205	.	-	2	Parent=Os12t0225300-03
Chr12	irgsp1_rep	three_prime_UTR	6816937	6817197	.	-	.	Parent=Os12t0225300-03
Chr12	irgsp1_rep	mRNA	6865308	6867028	.	+	.	ID=Os12t0225700-01;Name=Os12t0225700-01;Locus_id=Os12g0225700;Note=Conserved hypothetical protein.;Transcript_evidence=AK068338 (DDBJ%2C Best hit);ORF_evidence=B9FR82 (UniProt);NIAS_FLcDNA=J013147B22;TENOR=Os12t0225700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	6865308	6866221	.	+	.	Parent=Os12t0225700-01
Chr12	irgsp1_rep	CDS	6866222	6866341	.	+	0	Parent=Os12t0225700-01
Chr12	irgsp1_rep	three_prime_UTR	6866342	6867028	.	+	.	Parent=Os12t0225700-01
Chr12	irgsp1_rep	mRNA	6869987	6872291	.	+	.	ID=Os12t0225900-01;Name=Os12t0225900-01;Locus_id=Os12g0225900;Note=Allyl alcohol dehydrogenase.;Transcript_evidence=AK243439 (DDBJ%2C Best hit);ORF_evidence=NP_001152093.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J100068F02;TENOR=Os12t0225900-01;KEGG=Os12t0225900-01 (EC:1.3.1.74)
Chr12	irgsp1_rep	five_prime_UTR	6869987	6870078	.	+	.	Parent=Os12t0225900-01
Chr12	irgsp1_rep	CDS	6870079	6870306	.	+	0	Parent=Os12t0225900-01
Chr12	irgsp1_rep	CDS	6870922	6871102	.	+	0	Parent=Os12t0225900-01
Chr12	irgsp1_rep	CDS	6871212	6871378	.	+	2	Parent=Os12t0225900-01
Chr12	irgsp1_rep	CDS	6871502	6871584	.	+	0	Parent=Os12t0225900-01
Chr12	irgsp1_rep	CDS	6871695	6872073	.	+	1	Parent=Os12t0225900-01
Chr12	irgsp1_rep	three_prime_UTR	6872074	6872291	.	+	.	Parent=Os12t0225900-01
Chr12	irgsp1_rep	mRNA	6871211	6872055	.	-	.	ID=Os12t0226066-00;Name=Os12t0226066-00;Locus_id=Os12g0226066;Note=Non-protein coding transcript.;Transcript_evidence=BT061853 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0226066-00
Chr12	irgsp1_rep	exon	6871692	6872055	.	-	.	Parent=Os12t0226066-00
Chr12	irgsp1_rep	exon	6871500	6871581	.	-	.	Parent=Os12t0226066-00
Chr12	irgsp1_rep	exon	6871211	6871376	.	-	.	Parent=Os12t0226066-00
Chr12	irgsp1_rep	mRNA	6889996	6896735	.	+	.	ID=Os12t0226400-00;Name=Os12t0226400-00;Locus_id=Os12g0226400;Note=Similar to 2-alkenal reductase.;Transcript_evidence=EU973635 (DDBJ);ORF_evidence=Q2KM86 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),NAD(P)-binding domain (IPR016040),Polyketide synthase%2C enoylreductase (IPR020843);TENOR=Os12t0226400-00;KEGG=Os12t0226400-00 (EC:1.3.1.74)
Chr12	irgsp1_rep	five_prime_UTR	6889996	6890008	.	+	.	Parent=Os12t0226400-00
Chr12	irgsp1_rep	CDS	6890009	6890254	.	+	0	Parent=Os12t0226400-00
Chr12	irgsp1_rep	CDS	6890658	6890835	.	+	0	Parent=Os12t0226400-00
Chr12	irgsp1_rep	CDS	6895551	6895717	.	+	2	Parent=Os12t0226400-00
Chr12	irgsp1_rep	CDS	6896018	6896100	.	+	0	Parent=Os12t0226400-00
Chr12	irgsp1_rep	CDS	6896257	6896629	.	+	1	Parent=Os12t0226400-00
Chr12	irgsp1_rep	three_prime_UTR	6896630	6896735	.	+	.	Parent=Os12t0226400-00
Chr12	irgsp1_rep	mRNA	6895550	6896617	.	-	.	ID=Os12t0226500-00;Name=Os12t0226500-00;Locus_id=Os12g0226500;Note=Hypothetical protein.;Transcript_evidence=BT061853 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0226500-00
Chr12	irgsp1_rep	CDS	6896369	6896617	.	-	0	Parent=Os12t0226500-00
Chr12	irgsp1_rep	three_prime_UTR	6896252	6896368	.	-	.	Parent=Os12t0226500-00
Chr12	irgsp1_rep	three_prime_UTR	6896014	6896092	.	-	.	Parent=Os12t0226500-00
Chr12	irgsp1_rep	three_prime_UTR	6895550	6895713	.	-	.	Parent=Os12t0226500-00
Chr12	irgsp1_rep	mRNA	6911276	6913929	.	+	.	ID=Os12t0226700-01;Name=Os12t0226700-01;Locus_id=Os12g0226700;Note=Similar to Allyl alcohol dehydrogenase.;Transcript_evidence=AK070393 (DDBJ%2C Best hit);ORF_evidence=NP_001152093.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023050P07;Expression=AK070393;TENOR=Os12t0226700-01;KEGG=Os12t0226700-01 (EC:1.3.1.74)
Chr12	irgsp1_rep	five_prime_UTR	6911276	6911303	.	+	.	Parent=Os12t0226700-01
Chr12	irgsp1_rep	CDS	6911304	6911537	.	+	0	Parent=Os12t0226700-01
Chr12	irgsp1_rep	CDS	6912257	6912434	.	+	0	Parent=Os12t0226700-01
Chr12	irgsp1_rep	CDS	6912928	6913094	.	+	2	Parent=Os12t0226700-01
Chr12	irgsp1_rep	CDS	6913206	6913288	.	+	0	Parent=Os12t0226700-01
Chr12	irgsp1_rep	CDS	6913374	6913752	.	+	1	Parent=Os12t0226700-01
Chr12	irgsp1_rep	three_prime_UTR	6913753	6913929	.	+	.	Parent=Os12t0226700-01
Chr12	irgsp1_rep	mRNA	6912927	6913734	.	-	.	ID=Os12t0226766-00;Name=Os12t0226766-00;Locus_id=Os12g0226766;Note=Non-protein coding transcript.;Transcript_evidence=BT061853 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0226766-00
Chr12	irgsp1_rep	exon	6913346	6913734	.	-	.	Parent=Os12t0226766-00
Chr12	irgsp1_rep	exon	6912927	6913153	.	-	.	Parent=Os12t0226766-00
Chr12	irgsp1_rep	mRNA	6916185	6918431	.	+	.	ID=Os12t0226900-01;Name=Os12t0226900-01;Locus_id=Os12g0226900;CGSNL Gene Symbol=CLPC2;CGSNL Gene Name=CLASS I CLP ATPASE C2;Oryzabase Gene Symbol Synonym(s)=ClpC2;Oryzabase Gene Name Synonym(s)=class I Clp ATPase C2;Note=Similar to Allyl alcohol dehydrogenase.;Transcript_evidence=AK071631 (DDBJ%2C Best hit),AK060453 (DDBJ%2C Best hit),AK104386 (DDBJ%2C Best hit);ORF_evidence=NP_001152093.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023105O06,001-011-G06,006-201-E06;Oryzabase=8947;Expression=AK071631;TENOR=Os12t0226900-01;KEGG=Os12t0226900-01 (EC:1.3.1.74)
Chr12	irgsp1_rep	five_prime_UTR	6916185	6916277	.	+	.	Parent=Os12t0226900-01
Chr12	irgsp1_rep	CDS	6916278	6916511	.	+	0	Parent=Os12t0226900-01
Chr12	irgsp1_rep	CDS	6917022	6917199	.	+	0	Parent=Os12t0226900-01
Chr12	irgsp1_rep	CDS	6917469	6917635	.	+	2	Parent=Os12t0226900-01
Chr12	irgsp1_rep	CDS	6917749	6917831	.	+	0	Parent=Os12t0226900-01
Chr12	irgsp1_rep	CDS	6917919	6918297	.	+	1	Parent=Os12t0226900-01
Chr12	irgsp1_rep	three_prime_UTR	6918298	6918431	.	+	.	Parent=Os12t0226900-01
Chr12	irgsp1_rep	mRNA	6916214	6918279	.	-	.	ID=Os12t0227050-00;Name=Os12t0227050-00;Locus_id=Os12g0227050;Note=Hypothetical protein.;Transcript_evidence=BT061853 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0227050-00
Chr12	irgsp1_rep	five_prime_UTR	6917923	6918279	.	-	.	Parent=Os12t0227050-00
Chr12	irgsp1_rep	five_prime_UTR	6917766	6917835	.	-	.	Parent=Os12t0227050-00
Chr12	irgsp1_rep	five_prime_UTR	6917414	6917651	.	-	.	Parent=Os12t0227050-00
Chr12	irgsp1_rep	five_prime_UTR	6917015	6917163	.	-	.	Parent=Os12t0227050-00
Chr12	irgsp1_rep	five_prime_UTR	6916473	6916518	.	-	.	Parent=Os12t0227050-00
Chr12	irgsp1_rep	CDS	6916248	6916472	.	-	0	Parent=Os12t0227050-00
Chr12	irgsp1_rep	three_prime_UTR	6916214	6916247	.	-	.	Parent=Os12t0227050-00
Chr12	irgsp1_rep	mRNA	6932587	6937071	.	+	.	ID=Os12t0227400-01;Name=Os12t0227400-01;Locus_id=Os12g0227400;Note=Allyl alcohol dehydrogenase.;Transcript_evidence=AK243579 (DDBJ%2C Best hit);ORF_evidence=NP_001152093.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Alcohol dehydrogenase superfamily%2C zinc-type (IPR002085),GroES-like (IPR011032),Alcohol dehydrogenase%2C C-terminal (IPR013149),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J100082K03;TENOR=Os12t0227400-01;KEGG=Os12t0227400-01 (EC:1.3.1.74)
Chr12	irgsp1_rep	five_prime_UTR	6932587	6932656	.	+	.	Parent=Os12t0227400-01
Chr12	irgsp1_rep	CDS	6932657	6932890	.	+	0	Parent=Os12t0227400-01
Chr12	irgsp1_rep	CDS	6935528	6935705	.	+	0	Parent=Os12t0227400-01
Chr12	irgsp1_rep	CDS	6936129	6936295	.	+	2	Parent=Os12t0227400-01
Chr12	irgsp1_rep	CDS	6936387	6936469	.	+	0	Parent=Os12t0227400-01
Chr12	irgsp1_rep	CDS	6936567	6936945	.	+	1	Parent=Os12t0227400-01
Chr12	irgsp1_rep	three_prime_UTR	6936946	6937071	.	+	.	Parent=Os12t0227400-01
Chr12	irgsp1_rep	mRNA	6936128	6936926	.	-	.	ID=Os12t0227450-00;Name=Os12t0227450-00;Locus_id=Os12g0227450;Note=Non-protein coding transcript.;Transcript_evidence=BT061853 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0227450-00
Chr12	irgsp1_rep	exon	6936545	6936926	.	-	.	Parent=Os12t0227450-00
Chr12	irgsp1_rep	exon	6936404	6936443	.	-	.	Parent=Os12t0227450-00
Chr12	irgsp1_rep	exon	6936128	6936315	.	-	.	Parent=Os12t0227450-00
Chr12	irgsp1_rep	mRNA	6945206	6948234	.	+	.	ID=Os12t0227500-00;Name=Os12t0227500-00;Locus_id=Os12g0227500;Note=Similar to Beta-glucosidase aggregating factor.;Transcript_evidence=CT835530 (DDBJ%2C Best hit);ORF_evidence=A6MZN6 (UniProt);InterPro=Plant disease resistance response protein (IPR004265);TENOR=Os12t0227500-00;KEGG=Os12t0227500-00
Chr12	irgsp1_rep	five_prime_UTR	6945206	6945275	.	+	.	Parent=Os12t0227500-00
Chr12	irgsp1_rep	CDS	6945276	6945559	.	+	0	Parent=Os12t0227500-00
Chr12	irgsp1_rep	CDS	6947701	6947881	.	+	1	Parent=Os12t0227500-00
Chr12	irgsp1_rep	three_prime_UTR	6947882	6948234	.	+	.	Parent=Os12t0227500-00
Chr12	irgsp1_rep	mRNA	6945292	6947871	.	-	.	ID=Os12t0227766-00;Name=Os12t0227766-00;Locus_id=Os12g0227766;Note=Hypothetical protein.;Transcript_evidence=BT016217 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0227766-00
Chr12	irgsp1_rep	five_prime_UTR	6947750	6947871	.	-	.	Parent=Os12t0227766-00
Chr12	irgsp1_rep	CDS	6947716	6947749	.	-	0	Parent=Os12t0227766-00
Chr12	irgsp1_rep	CDS	6945292	6945571	.	-	2	Parent=Os12t0227766-00
Chr12	irgsp1_rep	mRNA	6962407	6962745	.	-	.	ID=Os12t0228032-00;Name=Os12t0228032-00;Locus_id=Os12g0228032;Note=Hypothetical protein.;Transcript_evidence=FP091474 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0228032-00
Chr12	irgsp1_rep	CDS	6962440	6962745	.	-	0	Parent=Os12t0228032-00
Chr12	irgsp1_rep	three_prime_UTR	6962407	6962439	.	-	.	Parent=Os12t0228032-00
Chr12	irgsp1_rep	mRNA	6966725	6972247	.	+	.	ID=Os12t0228300-01;Name=Os12t0228300-01;Locus_id=Os12g0228300;Note=Conserved hypothetical protein.;Transcript_evidence=AK288154 (DDBJ%2C Best hit);ORF_evidence=A3B8Q5 (UniProt);NIAS_FLcDNA=J080319E13;TENOR=Os12t0228300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	6966725	6966725	.	+	.	Parent=Os12t0228300-01
Chr12	irgsp1_rep	CDS	6966726	6966950	.	+	0	Parent=Os12t0228300-01
Chr12	irgsp1_rep	three_prime_UTR	6966951	6967290	.	+	.	Parent=Os12t0228300-01
Chr12	irgsp1_rep	three_prime_UTR	6971568	6972247	.	+	.	Parent=Os12t0228300-01
Chr12	irgsp1_rep	mRNA	6973106	6976384	.	-	.	ID=Os12t0228325-00;Name=Os12t0228325-00;Locus_id=Os12g0228325;Note=Hypothetical protein.;Transcript_evidence=tplb0058h13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0228325-00
Chr12	irgsp1_rep	five_prime_UTR	6976232	6976384	.	-	.	Parent=Os12t0228325-00
Chr12	irgsp1_rep	CDS	6975896	6976231	.	-	0	Parent=Os12t0228325-00
Chr12	irgsp1_rep	three_prime_UTR	6975844	6975895	.	-	.	Parent=Os12t0228325-00
Chr12	irgsp1_rep	three_prime_UTR	6975401	6975562	.	-	.	Parent=Os12t0228325-00
Chr12	irgsp1_rep	three_prime_UTR	6974748	6975320	.	-	.	Parent=Os12t0228325-00
Chr12	irgsp1_rep	three_prime_UTR	6973106	6973494	.	-	.	Parent=Os12t0228325-00
Chr12	irgsp1_rep	mRNA	6973270	6976469	.	+	.	ID=Os12t0228350-00;Name=Os12t0228350-00;Locus_id=Os12g0228350;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001066436.2 (RefSeq);TENOR=Os12t0228350-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	6973270	6973422	.	+	0	Parent=Os12t0228350-00
Chr12	irgsp1_rep	CDS	6975969	6976469	.	+	0	Parent=Os12t0228350-00
Chr12	irgsp1_rep	mRNA	6976909	6982100	.	-	.	ID=Os12t0228400-01;Name=Os12t0228400-01;Locus_id=Os12g0228400;Note=Similar to cDNA clone:J033003J10%2C full insert sequence.;Transcript_evidence=AK101042 (DDBJ%2C Best hit);ORF_evidence=Q8H6U4 (UniProt);NIAS_FLcDNA=J033003J10;TENOR=Os12t0228400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	6981770	6982100	.	-	.	Parent=Os12t0228400-01
Chr12	irgsp1_rep	CDS	6981473	6981769	.	-	0	Parent=Os12t0228400-01
Chr12	irgsp1_rep	CDS	6979835	6979937	.	-	0	Parent=Os12t0228400-01
Chr12	irgsp1_rep	CDS	6979757	6979758	.	-	2	Parent=Os12t0228400-01
Chr12	irgsp1_rep	three_prime_UTR	6979678	6979756	.	-	.	Parent=Os12t0228400-01
Chr12	irgsp1_rep	three_prime_UTR	6979487	6979576	.	-	.	Parent=Os12t0228400-01
Chr12	irgsp1_rep	three_prime_UTR	6979357	6979410	.	-	.	Parent=Os12t0228400-01
Chr12	irgsp1_rep	three_prime_UTR	6976909	6977749	.	-	.	Parent=Os12t0228400-01
Chr12	irgsp1_rep	mRNA	6977133	6982099	.	-	.	ID=Os12t0228400-02;Name=Os12t0228400-02;Locus_id=Os12g0228400;Note=Similar to cDNA clone:J033003J10%2C full insert sequence.;Transcript_evidence=AK120234 (DDBJ%2C Best hit);ORF_evidence=Q8H6U4 (UniProt);NIAS_FLcDNA=J013043L17;Expression=AK120234;TENOR=Os12t0228400-02;KEGG=Os12t0228400-02
Chr12	irgsp1_rep	five_prime_UTR	6981770	6982099	.	-	.	Parent=Os12t0228400-02
Chr12	irgsp1_rep	CDS	6981473	6981769	.	-	0	Parent=Os12t0228400-02
Chr12	irgsp1_rep	CDS	6979835	6979937	.	-	0	Parent=Os12t0228400-02
Chr12	irgsp1_rep	CDS	6979757	6979758	.	-	2	Parent=Os12t0228400-02
Chr12	irgsp1_rep	three_prime_UTR	6979678	6979756	.	-	.	Parent=Os12t0228400-02
Chr12	irgsp1_rep	three_prime_UTR	6977133	6979606	.	-	.	Parent=Os12t0228400-02
Chr12	irgsp1_rep	mRNA	6982814	6983444	.	+	.	ID=Os12t0228450-00;Name=Os12t0228450-00;Locus_id=Os12g0228450;Note=Conserved hypothetical protein.;Transcript_evidence=EU947692 (DDBJ);ORF_evidence=Q2QVI6 (UniProt);TENOR=Os12t0228450-00
Chr12	irgsp1_rep	CDS	6982814	6983064	.	+	0	Parent=Os12t0228450-00
Chr12	irgsp1_rep	CDS	6983220	6983268	.	+	1	Parent=Os12t0228450-00
Chr12	irgsp1_rep	three_prime_UTR	6983269	6983444	.	+	.	Parent=Os12t0228450-00
Chr12	irgsp1_rep	mRNA	6985010	6986144	.	-	.	ID=Os12t0228500-01;Name=Os12t0228500-01;Locus_id=Os12g0228500;Note=Hypothetical conserved gene.;Transcript_evidence=AK287997 (DDBJ%2C Best hit);ORF_evidence=NP_001176998.1 (RefSeq);NIAS_FLcDNA=J075104A17;Oryzabase=22568;TENOR=Os12t0228500-01;KEGG=Os12t0228500-01
Chr12	irgsp1_rep	five_prime_UTR	6986144	6986144	.	-	.	Parent=Os12t0228500-01
Chr12	irgsp1_rep	CDS	6985808	6986143	.	-	0	Parent=Os12t0228500-01
Chr12	irgsp1_rep	CDS	6985173	6985733	.	-	0	Parent=Os12t0228500-01
Chr12	irgsp1_rep	three_prime_UTR	6985010	6985172	.	-	.	Parent=Os12t0228500-01
Chr12	irgsp1_rep	mRNA	7011262	7012564	.	-	.	ID=Os12t0228650-00;Name=Os12t0228650-00;Locus_id=Os12g0228650;Note=Hypothetical protein.;Transcript_evidence=BT016217 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0228650-00
Chr12	irgsp1_rep	five_prime_UTR	7012307	7012564	.	-	.	Parent=Os12t0228650-00
Chr12	irgsp1_rep	five_prime_UTR	7012013	7012165	.	-	.	Parent=Os12t0228650-00
Chr12	irgsp1_rep	CDS	7011974	7012012	.	-	0	Parent=Os12t0228650-00
Chr12	irgsp1_rep	CDS	7011680	7011884	.	-	0	Parent=Os12t0228650-00
Chr12	irgsp1_rep	CDS	7011481	7011509	.	-	2	Parent=Os12t0228650-00
Chr12	irgsp1_rep	three_prime_UTR	7011262	7011480	.	-	.	Parent=Os12t0228650-00
Chr12	irgsp1_rep	mRNA	7011412	7012569	.	+	.	ID=Os12t0228700-00;Name=Os12t0228700-00;Locus_id=Os12g0228700;Note=Similar to 32 kDa protein.;Transcript_evidence=FP098427 (DDBJ);ORF_evidence=Q40006 (UniProt);InterPro=Mannose-binding lectin (IPR001229),Plant disease resistance response protein (IPR004265);TENOR=Os12t0228700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	7011412	7011444	.	+	.	Parent=Os12t0228700-00
Chr12	irgsp1_rep	CDS	7011445	7011536	.	+	0	Parent=Os12t0228700-00
Chr12	irgsp1_rep	CDS	7011710	7011899	.	+	1	Parent=Os12t0228700-00
Chr12	irgsp1_rep	CDS	7011988	7012185	.	+	0	Parent=Os12t0228700-00
Chr12	irgsp1_rep	CDS	7012333	7012509	.	+	0	Parent=Os12t0228700-00
Chr12	irgsp1_rep	three_prime_UTR	7012510	7012569	.	+	.	Parent=Os12t0228700-00
Chr12	irgsp1_rep	mRNA	7014180	7014828	.	-	.	ID=Os12t0228800-01;Name=Os12t0228800-01;Locus_id=Os12g0228800;CGSNL Gene Symbol=CML28;CGSNL Gene Name=CALMODULIN-LIKE PROTEIN 28;Oryzabase Gene Symbol Synonym(s)=OsCML28;Oryzabase Gene Name Synonym(s)=calmodulin-like protein 28;Note=Similar to Calmodulin-like protein.;Transcript_evidence=AK064732 (DDBJ%2C Best hit);ORF_evidence=Q2QVI1 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=002-120-C02;Oryzabase=10511;Expression=AK064732;TENOR=Os12t0228800-01;KEGG=Os12t0228800-01
Chr12	irgsp1_rep	CDS	7014322	7014828	.	-	0	Parent=Os12t0228800-01
Chr12	irgsp1_rep	three_prime_UTR	7014180	7014321	.	-	.	Parent=Os12t0228800-01
Chr12	irgsp1_rep	mRNA	7017361	7022664	.	-	.	ID=Os12t0228900-01;Name=Os12t0228900-01;Locus_id=Os12g0228900;Note=Similar to Leucine Rich Repeat family protein%2C expressed.;Transcript_evidence=AK103549 (DDBJ%2C Best hit);ORF_evidence=Q2QVI0 (UniProt);NIAS_FLcDNA=J033132F01;TENOR=Os12t0228900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	7022619	7022664	.	-	.	Parent=Os12t0228900-01
Chr12	irgsp1_rep	CDS	7022332	7022618	.	-	0	Parent=Os12t0228900-01
Chr12	irgsp1_rep	CDS	7021919	7021996	.	-	1	Parent=Os12t0228900-01
Chr12	irgsp1_rep	CDS	7021595	7021723	.	-	1	Parent=Os12t0228900-01
Chr12	irgsp1_rep	CDS	7021407	7021480	.	-	1	Parent=Os12t0228900-01
Chr12	irgsp1_rep	CDS	7020839	7020932	.	-	2	Parent=Os12t0228900-01
Chr12	irgsp1_rep	CDS	7020507	7020549	.	-	1	Parent=Os12t0228900-01
Chr12	irgsp1_rep	CDS	7020182	7020244	.	-	0	Parent=Os12t0228900-01
Chr12	irgsp1_rep	CDS	7019372	7019395	.	-	0	Parent=Os12t0228900-01
Chr12	irgsp1_rep	three_prime_UTR	7019275	7019371	.	-	.	Parent=Os12t0228900-01
Chr12	irgsp1_rep	three_prime_UTR	7019094	7019194	.	-	.	Parent=Os12t0228900-01
Chr12	irgsp1_rep	three_prime_UTR	7018886	7018999	.	-	.	Parent=Os12t0228900-01
Chr12	irgsp1_rep	three_prime_UTR	7018528	7018698	.	-	.	Parent=Os12t0228900-01
Chr12	irgsp1_rep	three_prime_UTR	7018325	7018468	.	-	.	Parent=Os12t0228900-01
Chr12	irgsp1_rep	three_prime_UTR	7018093	7018241	.	-	.	Parent=Os12t0228900-01
Chr12	irgsp1_rep	three_prime_UTR	7017361	7017991	.	-	.	Parent=Os12t0228900-01
Chr12	irgsp1_rep	mRNA	7028694	7030584	.	-	.	ID=Os12t0229100-01;Name=Os12t0229100-01;Locus_id=Os12g0229100;Note=Hypothetical conserved gene.;Transcript_evidence=AK110949 (DDBJ%2C Best hit);ORF_evidence=A2WPW7 (UniProt);NIAS_FLcDNA=002-173-H11;Expression=AK110949;TENOR=Os12t0229100-01;KEGG=Os12t0229100-01
Chr12	irgsp1_rep	five_prime_UTR	7030091	7030584	.	-	.	Parent=Os12t0229100-01
Chr12	irgsp1_rep	five_prime_UTR	7029410	7029528	.	-	.	Parent=Os12t0229100-01
Chr12	irgsp1_rep	five_prime_UTR	7029138	7029246	.	-	.	Parent=Os12t0229100-01
Chr12	irgsp1_rep	CDS	7029134	7029137	.	-	0	Parent=Os12t0229100-01
Chr12	irgsp1_rep	CDS	7028880	7028998	.	-	2	Parent=Os12t0229100-01
Chr12	irgsp1_rep	three_prime_UTR	7028694	7028879	.	-	.	Parent=Os12t0229100-01
Chr12	irgsp1_rep	mRNA	7066143	7069455	.	+	.	ID=Os12t0229600-00;Name=Os12t0229600-00;Locus_id=Os12g0229600;Note=Ankyrin repeat domain containing protein.;Transcript_evidence=AK363479 (DDBJ);ORF_evidence=Q2QVH3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);TENOR=Os12t0229600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	7066143	7066770	.	+	0	Parent=Os12t0229600-00
Chr12	irgsp1_rep	CDS	7068884	7069455	.	+	2	Parent=Os12t0229600-00
Chr12	irgsp1_rep	mRNA	7095860	7101608	.	-	.	ID=Os12t0230100-01;Name=Os12t0230100-01;Locus_id=Os12g0230100;Note=Similar to ATP-dependent Clp protease ATP-binding subunit clpA homolog%2C chloroplast precursor (Fragment).;Transcript_evidence=AK066153 (DDBJ%2C Best hit);ORF_evidence=P31542 (UniProt);GO=Biological Process: nucleotide-excision repair (GO:0006289),Biological Process: protein metabolic process (GO:0019538),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: DNA binding (GO:0003677),Molecular Function: nuclease activity (GO:0004518),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=Chaperonin ClpA/B (IPR001270),UvrB/UvrC protein (IPR001943),ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),Clp%2C N-terminal (IPR004176),ATPase%2C AAA-2 (IPR013093),Chaperonin ClpA/B%2C conserved site (IPR018368),Clp ATPase%2C C-terminal (IPR019489),Double Clp-N motif (IPR023150);NIAS_FLcDNA=J013058A21;Expression=AK066153;TENOR=Os12t0230100-01;KEGG=Os12t0230100-01
Chr12	irgsp1_rep	five_prime_UTR	7101503	7101608	.	-	.	Parent=Os12t0230100-01
Chr12	irgsp1_rep	five_prime_UTR	7100789	7100811	.	-	.	Parent=Os12t0230100-01
Chr12	irgsp1_rep	CDS	7100233	7100788	.	-	0	Parent=Os12t0230100-01
Chr12	irgsp1_rep	CDS	7099378	7099493	.	-	2	Parent=Os12t0230100-01
Chr12	irgsp1_rep	CDS	7099160	7099282	.	-	0	Parent=Os12t0230100-01
Chr12	irgsp1_rep	CDS	7098901	7099086	.	-	0	Parent=Os12t0230100-01
Chr12	irgsp1_rep	CDS	7098481	7098696	.	-	0	Parent=Os12t0230100-01
Chr12	irgsp1_rep	CDS	7098129	7098346	.	-	0	Parent=Os12t0230100-01
Chr12	irgsp1_rep	CDS	7097806	7097881	.	-	1	Parent=Os12t0230100-01
Chr12	irgsp1_rep	CDS	7097615	7097704	.	-	0	Parent=Os12t0230100-01
Chr12	irgsp1_rep	CDS	7096060	7097238	.	-	0	Parent=Os12t0230100-01
Chr12	irgsp1_rep	three_prime_UTR	7095860	7096059	.	-	.	Parent=Os12t0230100-01
Chr12	irgsp1_rep	mRNA	7103232	7106397	.	-	.	ID=Os12t0230133-01;Name=Os12t0230133-01;Locus_id=Os12g0230133;Note=Conserved hypothetical protein.;Transcript_evidence=AK242036 (DDBJ%2C Best hit);ORF_evidence=B9GCG5 (UniProt);NIAS_FLcDNA=J075118C24;TENOR=Os12t0230133-01;KEGG=Os12t0230133-01
Chr12	irgsp1_rep	five_prime_UTR	7106307	7106397	.	-	.	Parent=Os12t0230133-01
Chr12	irgsp1_rep	five_prime_UTR	7104674	7104716	.	-	.	Parent=Os12t0230133-01
Chr12	irgsp1_rep	CDS	7103408	7104673	.	-	0	Parent=Os12t0230133-01
Chr12	irgsp1_rep	three_prime_UTR	7103232	7103407	.	-	.	Parent=Os12t0230133-01
Chr12	irgsp1_rep	mRNA	7111787	7117102	.	+	.	ID=Os12t0230200-01;Name=Os12t0230200-01;Locus_id=Os12g0230200;CGSNL Gene Symbol=CDPK29;CGSNL Gene Name=CALCIUM-DEPENDENT PROTEIN KINASE 29;Oryzabase Gene Symbol Synonym(s)=OsCDPK29%2C OsCPK29;Oryzabase Gene Name Synonym(s)=calcium-dependent protein kinase;Note=Similar to Protein kinase-like protein.;Transcript_evidence=AK241003 (DDBJ%2C Best hit);ORF_evidence=Q336J4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J065053E13;Oryzabase=8080;TENOR=Os12t0230200-01;KEGG=Os12t0230200-01 (EC:2.7.11.1)
Chr12	irgsp1_rep	five_prime_UTR	7111787	7112540	.	+	.	Parent=Os12t0230200-01
Chr12	irgsp1_rep	CDS	7112541	7113188	.	+	0	Parent=Os12t0230200-01
Chr12	irgsp1_rep	CDS	7113361	7113432	.	+	0	Parent=Os12t0230200-01
Chr12	irgsp1_rep	three_prime_UTR	7113433	7113503	.	+	.	Parent=Os12t0230200-01
Chr12	irgsp1_rep	three_prime_UTR	7113946	7114133	.	+	.	Parent=Os12t0230200-01
Chr12	irgsp1_rep	three_prime_UTR	7115292	7117102	.	+	.	Parent=Os12t0230200-01
Chr12	irgsp1_rep	mRNA	7112287	7116163	.	+	.	ID=Os12t0230200-02;Name=Os12t0230200-02;Locus_id=Os12g0230200;CGSNL Gene Symbol=CDPK29;CGSNL Gene Name=CALCIUM-DEPENDENT PROTEIN KINASE 29;Oryzabase Gene Symbol Synonym(s)=OsCDPK29%2C OsCPK29;Oryzabase Gene Name Synonym(s)=calcium-dependent protein kinase;Note=Similar to Calcium-dependent protein kinase.;Transcript_evidence=AK072981 (DDBJ%2C Best hit);ORF_evidence=Q336J4 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Calcium-binding EF-hand (IPR002048),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),EF-hand-like domain (IPR011992),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J023150E22;Oryzabase=8080;Expression=AK072981;TENOR=Os12t0230200-02;KEGG=Os12t0230200-02 (EC:2.7.11.17)
Chr12	irgsp1_rep	five_prime_UTR	7112287	7112540	.	+	.	Parent=Os12t0230200-02
Chr12	irgsp1_rep	CDS	7112541	7113131	.	+	0	Parent=Os12t0230200-02
Chr12	irgsp1_rep	CDS	7114013	7114136	.	+	0	Parent=Os12t0230200-02
Chr12	irgsp1_rep	CDS	7114231	7114374	.	+	2	Parent=Os12t0230200-02
Chr12	irgsp1_rep	CDS	7114464	7114616	.	+	2	Parent=Os12t0230200-02
Chr12	irgsp1_rep	CDS	7114702	7114817	.	+	2	Parent=Os12t0230200-02
Chr12	irgsp1_rep	CDS	7114901	7115068	.	+	0	Parent=Os12t0230200-02
Chr12	irgsp1_rep	CDS	7115232	7115453	.	+	0	Parent=Os12t0230200-02
Chr12	irgsp1_rep	CDS	7115551	7115724	.	+	0	Parent=Os12t0230200-02
Chr12	irgsp1_rep	three_prime_UTR	7115725	7116163	.	+	.	Parent=Os12t0230200-02
Chr12	irgsp1_rep	mRNA	7112683	7115684	.	-	.	ID=Os12t0230233-00;Name=Os12t0230233-00;Locus_id=Os12g0230233;Note=Hypothetical protein.;Transcript_evidence=tplb0027d15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0230233-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	7115618	7115684	.	-	.	Parent=Os12t0230233-00
Chr12	irgsp1_rep	CDS	7115534	7115617	.	-	0	Parent=Os12t0230233-00
Chr12	irgsp1_rep	CDS	7115238	7115432	.	-	0	Parent=Os12t0230233-00
Chr12	irgsp1_rep	CDS	7114887	7115076	.	-	0	Parent=Os12t0230233-00
Chr12	irgsp1_rep	CDS	7114689	7114810	.	-	2	Parent=Os12t0230233-00
Chr12	irgsp1_rep	CDS	7114491	7114601	.	-	0	Parent=Os12t0230233-00
Chr12	irgsp1_rep	three_prime_UTR	7114456	7114490	.	-	.	Parent=Os12t0230233-00
Chr12	irgsp1_rep	three_prime_UTR	7114215	7114366	.	-	.	Parent=Os12t0230233-00
Chr12	irgsp1_rep	three_prime_UTR	7114028	7114125	.	-	.	Parent=Os12t0230233-00
Chr12	irgsp1_rep	three_prime_UTR	7112683	7113145	.	-	.	Parent=Os12t0230233-00
Chr12	irgsp1_rep	mRNA	7115776	7116905	.	-	.	ID=Os12t0230266-00;Name=Os12t0230266-00;Locus_id=Os12g0230266;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os12t0230266-00;KEGG=Os12t0230266-00
Chr12	irgsp1_rep	CDS	7116743	7116905	.	-	0	Parent=Os12t0230266-00
Chr12	irgsp1_rep	CDS	7115776	7115879	.	-	2	Parent=Os12t0230266-00
Chr12	irgsp1_rep	mRNA	7130738	7132096	.	+	.	ID=Os12t0230600-01;Name=Os12t0230600-01;Locus_id=Os12g0230600;Note=Protein of unknown function DUF1685 family protein.;Transcript_evidence=AK072568 (DDBJ%2C Best hit);ORF_evidence=NP_188908.1 (RefSeq);InterPro=Protein of unknown function DUF1685 (IPR012881);NIAS_FLcDNA=J023131I01;Expression=AK072568;TENOR=Os12t0230600-01;KEGG=Os12t0230600-01
Chr12	irgsp1_rep	five_prime_UTR	7130738	7130809	.	+	.	Parent=Os12t0230600-01
Chr12	irgsp1_rep	CDS	7130810	7131377	.	+	0	Parent=Os12t0230600-01
Chr12	irgsp1_rep	CDS	7131564	7131643	.	+	2	Parent=Os12t0230600-01
Chr12	irgsp1_rep	three_prime_UTR	7131644	7132096	.	+	.	Parent=Os12t0230600-01
Chr12	irgsp1_rep	mRNA	7165808	7171019	.	+	.	ID=Os12t0231000-01;Name=Os12t0231000-01;Locus_id=Os12g0231000;Oryzabase Gene Symbol Synonym(s)=OsPTR3%2C PTR3%2C PTR3-A;Oryzabase Gene Name Synonym(s)=Peptide transporter PTR3-A;Note=TGF-beta receptor%2C type I/II extracellular region family protein.;Transcript_evidence=AK120737 (DDBJ%2C Best hit);ORF_evidence=Q2R733 (UniProt);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J023003I19;Oryzabase=18460;Expression=AK120737;TENOR=Os12t0231000-01;KEGG=Os12t0231000-01
Chr12	irgsp1_rep	five_prime_UTR	7165808	7165941	.	+	.	Parent=Os12t0231000-01
Chr12	irgsp1_rep	CDS	7165942	7166035	.	+	0	Parent=Os12t0231000-01
Chr12	irgsp1_rep	CDS	7166673	7166889	.	+	2	Parent=Os12t0231000-01
Chr12	irgsp1_rep	CDS	7168023	7168488	.	+	1	Parent=Os12t0231000-01
Chr12	irgsp1_rep	CDS	7169140	7169255	.	+	0	Parent=Os12t0231000-01
Chr12	irgsp1_rep	CDS	7169767	7170625	.	+	1	Parent=Os12t0231000-01
Chr12	irgsp1_rep	three_prime_UTR	7170626	7171019	.	+	.	Parent=Os12t0231000-01
Chr12	irgsp1_rep	mRNA	7171810	7176574	.	-	.	ID=Os12t0231100-01;Name=Os12t0231100-01;Locus_id=Os12g0231100;Note=Conserved hypothetical protein.;Transcript_evidence=AK241475 (DDBJ%2C Best hit);ORF_evidence=Q2QVF9 (UniProt);NIAS_FLcDNA=J065165I23;TENOR=Os12t0231100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	7176574	7176574	.	-	.	Parent=Os12t0231100-01
Chr12	irgsp1_rep	CDS	7176113	7176573	.	-	0	Parent=Os12t0231100-01
Chr12	irgsp1_rep	CDS	7172203	7172464	.	-	1	Parent=Os12t0231100-01
Chr12	irgsp1_rep	three_prime_UTR	7171810	7172202	.	-	.	Parent=Os12t0231100-01
Chr12	irgsp1_rep	mRNA	7193916	7200248	.	+	.	ID=Os12t0231600-00;Name=Os12t0231600-00;Locus_id=Os12g0231600;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QVF5 (UniProt);TENOR=Os12t0231600-00
Chr12	irgsp1_rep	CDS	7193916	7193973	.	+	0	Parent=Os12t0231600-00
Chr12	irgsp1_rep	CDS	7194053	7194139	.	+	2	Parent=Os12t0231600-00
Chr12	irgsp1_rep	CDS	7194221	7194286	.	+	2	Parent=Os12t0231600-00
Chr12	irgsp1_rep	CDS	7200019	7200248	.	+	2	Parent=Os12t0231600-00
Chr12	irgsp1_rep	mRNA	7197167	7199434	.	+	.	ID=Os12t0231700-00;Name=Os12t0231700-00;Locus_id=Os12g0231700;Note=Transposase%2C Ptta/En/Spm%2C plant domain containing protein.;Transcript_evidence=AK099838 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;InterPro=Transposase%2C Ptta/En/Spm%2C plant (IPR004252);TENOR=Os12t0231700-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	7197167	7197316	.	+	.	Parent=Os12t0231700-00
Chr12	irgsp1_rep	CDS	7197413	7197628	.	+	0	Parent=Os12t0231700-00
Chr12	irgsp1_rep	CDS	7197760	7197852	.	+	0	Parent=Os12t0231700-00
Chr12	irgsp1_rep	CDS	7197931	7198011	.	+	0	Parent=Os12t0231700-00
Chr12	irgsp1_rep	CDS	7198099	7198483	.	+	0	Parent=Os12t0231700-00
Chr12	irgsp1_rep	CDS	7198578	7198615	.	+	2	Parent=Os12t0231700-00
Chr12	irgsp1_rep	three_prime_UTR	7198616	7198638	.	+	.	Parent=Os12t0231700-00
Chr12	irgsp1_rep	three_prime_UTR	7199048	7199434	.	+	.	Parent=Os12t0231700-00
Chr12	irgsp1_rep	mRNA	7235000	7237115	.	+	.	ID=Os12t0232300-00;Name=Os12t0232300-00;Locus_id=Os12g0232300;CGSNL Gene Symbol=FTL7;CGSNL Gene Name=FLOWERING TIME LIKE GENE 7;Oryzabase Gene Symbol Synonym(s)=FT-L 7%2C OsFTL7;Oryzabase Gene Name Synonym(s)=FT-like gene 7;Note=Similar to ZCN20.;Transcript_evidence=EU241935 (DDBJ);ORF_evidence=A9LLZ4 (UniProt);InterPro=Phosphatidylethanolamine-binding%2C conserved site (IPR001858),Phosphatidylethanolamine-binding protein PEBP (IPR008914);Oryzabase=11229;TENOR=Os12t0232300-00;KEGG=Os12t0232300-00
Chr12	irgsp1_rep	CDS	7235000	7235200	.	+	0	Parent=Os12t0232300-00
Chr12	irgsp1_rep	CDS	7235780	7235841	.	+	0	Parent=Os12t0232300-00
Chr12	irgsp1_rep	CDS	7236420	7236460	.	+	1	Parent=Os12t0232300-00
Chr12	irgsp1_rep	CDS	7236690	7236919	.	+	2	Parent=Os12t0232300-00
Chr12	irgsp1_rep	three_prime_UTR	7236920	7237115	.	+	.	Parent=Os12t0232300-00
Chr12	irgsp1_rep	mRNA	7243314	7244392	.	-	.	ID=Os12t0232700-01;Name=Os12t0232700-01;Locus_id=Os12g0232700;Note=Hypothetical protein.;Transcript_evidence=AK067212 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013096H13;Expression=AK067212;TENOR=Os12t0232700-01;KEGG=Os12t0232700-01
Chr12	irgsp1_rep	five_prime_UTR	7243636	7244392	.	-	.	Parent=Os12t0232700-01
Chr12	irgsp1_rep	CDS	7243363	7243635	.	-	0	Parent=Os12t0232700-01
Chr12	irgsp1_rep	three_prime_UTR	7243314	7243362	.	-	.	Parent=Os12t0232700-01
Chr12	irgsp1_rep	mRNA	7286400	7287545	.	+	.	ID=Os12t0233100-01;Name=Os12t0233100-01;Locus_id=Os12g0233100;Note=WW/Rsp5/WWP domain containing protein.;Transcript_evidence=AK108229 (DDBJ%2C Best hit);ORF_evidence=Q2QVE4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WW/Rsp5/WWP (IPR001202);NIAS_FLcDNA=002-140-F12;Expression=AK108229;TENOR=Os12t0233100-01;KEGG=Os12t0233100-01
Chr12	irgsp1_rep	five_prime_UTR	7286400	7286900	.	+	.	Parent=Os12t0233100-01
Chr12	irgsp1_rep	CDS	7286901	7287317	.	+	0	Parent=Os12t0233100-01
Chr12	irgsp1_rep	three_prime_UTR	7287318	7287545	.	+	.	Parent=Os12t0233100-01
Chr12	irgsp1_rep	mRNA	7289748	7291739	.	-	.	ID=Os12t0233200-00;Name=Os12t0233200-00;Locus_id=Os12g0233200;Note=Hypothetical conserved gene.;Transcript_evidence=AK376174 (DDBJ);ORF_evidence=NP_001066448.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os12t0233200-00;KEGG=Os12t0233200-00
Chr12	irgsp1_rep	CDS	7289748	7291739	.	-	0	Parent=Os12t0233200-00
Chr12	irgsp1_rep	mRNA	7293407	7298321	.	+	.	ID=Os12t0233300-01;Name=Os12t0233300-01;Locus_id=Os12g0233300;Note=Histidine triad (HIT) protein family protein.;Transcript_evidence=AK058317 (DDBJ%2C Best hit);ORF_evidence=XP_002863905.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Histidine triad (HIT) protein (IPR001310),Histidine triad-like motif (IPR011146),Histidine triad motif (IPR011151),Histidine triad%2C conserved site (IPR019808);NIAS_FLcDNA=001-014-A08;Expression=AK058317;TENOR=Os12t0233300-01;KEGG=Os12t0233300-01
Chr12	irgsp1_rep	five_prime_UTR	7293407	7293501	.	+	.	Parent=Os12t0233300-01
Chr12	irgsp1_rep	CDS	7293502	7293762	.	+	0	Parent=Os12t0233300-01
Chr12	irgsp1_rep	CDS	7293942	7293997	.	+	0	Parent=Os12t0233300-01
Chr12	irgsp1_rep	CDS	7296253	7296310	.	+	1	Parent=Os12t0233300-01
Chr12	irgsp1_rep	CDS	7296756	7296822	.	+	0	Parent=Os12t0233300-01
Chr12	irgsp1_rep	CDS	7297440	7297495	.	+	2	Parent=Os12t0233300-01
Chr12	irgsp1_rep	CDS	7297617	7297670	.	+	0	Parent=Os12t0233300-01
Chr12	irgsp1_rep	CDS	7297815	7297940	.	+	0	Parent=Os12t0233300-01
Chr12	irgsp1_rep	three_prime_UTR	7297941	7298321	.	+	.	Parent=Os12t0233300-01
Chr12	irgsp1_rep	mRNA	7305651	7305986	.	+	.	ID=Os12t0233366-00;Name=Os12t0233366-00;Locus_id=Os12g0233366;Note=Non-protein coding transcript.;Transcript_evidence=CT835611 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os12t0233366-00
Chr12	irgsp1_rep	exon	7305651	7305986	.	+	.	Parent=Os12t0233366-00
Chr12	irgsp1_rep	mRNA	7306653	7311336	.	+	.	ID=Os12t0233400-01;Name=Os12t0233400-01;Locus_id=Os12g0233400;Note=Zinc finger%2C C2H2-like domain containing protein.;Transcript_evidence=AK069593 (DDBJ%2C Best hit);ORF_evidence=NP_568969.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J023023L10;Expression=AK069593;TENOR=Os12t0233400-01;KEGG=Os12t0233400-01
Chr12	irgsp1_rep	five_prime_UTR	7306653	7306858	.	+	.	Parent=Os12t0233400-01
Chr12	irgsp1_rep	five_prime_UTR	7306927	7306987	.	+	.	Parent=Os12t0233400-01
Chr12	irgsp1_rep	CDS	7306988	7307080	.	+	0	Parent=Os12t0233400-01
Chr12	irgsp1_rep	CDS	7308004	7308029	.	+	0	Parent=Os12t0233400-01
Chr12	irgsp1_rep	CDS	7308297	7308381	.	+	1	Parent=Os12t0233400-01
Chr12	irgsp1_rep	CDS	7308465	7308674	.	+	0	Parent=Os12t0233400-01
Chr12	irgsp1_rep	CDS	7309015	7309137	.	+	0	Parent=Os12t0233400-01
Chr12	irgsp1_rep	CDS	7309794	7309851	.	+	0	Parent=Os12t0233400-01
Chr12	irgsp1_rep	CDS	7309943	7310016	.	+	2	Parent=Os12t0233400-01
Chr12	irgsp1_rep	CDS	7310555	7310643	.	+	0	Parent=Os12t0233400-01
Chr12	irgsp1_rep	CDS	7310719	7310788	.	+	1	Parent=Os12t0233400-01
Chr12	irgsp1_rep	three_prime_UTR	7310789	7310798	.	+	.	Parent=Os12t0233400-01
Chr12	irgsp1_rep	three_prime_UTR	7311006	7311336	.	+	.	Parent=Os12t0233400-01
Chr12	irgsp1_rep	mRNA	7314384	7315651	.	+	.	ID=Os12t0233500-01;Name=Os12t0233500-01;Locus_id=Os12g0233500;Note=Hypothetical conserved gene.;Transcript_evidence=AK241968 (DDBJ%2C Best hit);ORF_evidence=Q2QVE0 (UniProt);NIAS_FLcDNA=J075095M24;TENOR=Os12t0233500-01;KEGG=Os12t0233500-01
Chr12	irgsp1_rep	five_prime_UTR	7314384	7314520	.	+	.	Parent=Os12t0233500-01
Chr12	irgsp1_rep	CDS	7314521	7315015	.	+	0	Parent=Os12t0233500-01
Chr12	irgsp1_rep	three_prime_UTR	7315016	7315651	.	+	.	Parent=Os12t0233500-01
Chr12	irgsp1_rep	mRNA	7326025	7327448	.	+	.	ID=Os12t0233600-01;Name=Os12t0233600-01;Locus_id=Os12g0233600;Note=Conserved hypothetical protein.;Transcript_evidence=AK058390 (DDBJ%2C Best hit);ORF_evidence=Q2QVD9 (UniProt);NIAS_FLcDNA=001-015-A05;TENOR=Os12t0233600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	7326025	7327314	.	+	0	Parent=Os12t0233600-01
Chr12	irgsp1_rep	three_prime_UTR	7327315	7327448	.	+	.	Parent=Os12t0233600-01
Chr12	irgsp1_rep	mRNA	7332072	7338083	.	-	.	ID=Os12t0233800-01;Name=Os12t0233800-01;Locus_id=Os12g0233800;CGSNL Gene Symbol=ZIP1A;CGSNL Gene Name=BASIC/LEUCINE ZIPPER FACTOR 1A;Oryzabase Gene Symbol Synonym(s)=OsbZIP86%2C OsZIP-1a;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 86%2C basic/leucine zipper protein 1a;Note=Similar to DNA-binding factor of bZIP class.;Transcript_evidence=AK121360 (DDBJ%2C Best hit);ORF_evidence=Q40625 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=G-box binding%2C MFMR (IPR012900);NIAS_FLcDNA=J023123F07;Oryzabase=10165;Expression=AK121360;TENOR=Os12t0233800-01;KEGG=Os12t0233800-01
Chr12	irgsp1_rep	five_prime_UTR	7337906	7338083	.	-	.	Parent=Os12t0233800-01
Chr12	irgsp1_rep	five_prime_UTR	7336390	7336462	.	-	.	Parent=Os12t0233800-01
Chr12	irgsp1_rep	CDS	7336333	7336389	.	-	0	Parent=Os12t0233800-01
Chr12	irgsp1_rep	CDS	7336157	7336225	.	-	0	Parent=Os12t0233800-01
Chr12	irgsp1_rep	CDS	7335796	7335882	.	-	0	Parent=Os12t0233800-01
Chr12	irgsp1_rep	CDS	7334665	7334748	.	-	0	Parent=Os12t0233800-01
Chr12	irgsp1_rep	CDS	7334395	7334454	.	-	0	Parent=Os12t0233800-01
Chr12	irgsp1_rep	CDS	7334137	7334324	.	-	0	Parent=Os12t0233800-01
Chr12	irgsp1_rep	CDS	7333995	7334049	.	-	1	Parent=Os12t0233800-01
Chr12	irgsp1_rep	CDS	7333811	7333850	.	-	0	Parent=Os12t0233800-01
Chr12	irgsp1_rep	CDS	7333431	7333726	.	-	2	Parent=Os12t0233800-01
Chr12	irgsp1_rep	three_prime_UTR	7332809	7333430	.	-	.	Parent=Os12t0233800-01
Chr12	irgsp1_rep	three_prime_UTR	7332596	7332721	.	-	.	Parent=Os12t0233800-01
Chr12	irgsp1_rep	three_prime_UTR	7332072	7332518	.	-	.	Parent=Os12t0233800-01
Chr12	irgsp1_rep	mRNA	7330157	7338043	.	-	.	ID=Os12t0233800-02;Name=Os12t0233800-02;Locus_id=Os12g0233800;CGSNL Gene Symbol=ZIP1A;CGSNL Gene Name=BASIC/LEUCINE ZIPPER FACTOR 1A;Oryzabase Gene Symbol Synonym(s)=OsbZIP86%2C OsZIP-1a;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 86%2C basic/leucine zipper protein 1a;Note=Similar to DNA-binding factor of bZIP class.;Transcript_evidence=AK065767 (DDBJ%2C Best hit);ORF_evidence=Q40625 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=G-box binding%2C MFMR (IPR012900);NIAS_FLcDNA=J013039C04;Oryzabase=10165;Expression=AK065767;TENOR=Os12t0233800-02;KEGG=Os12t0233800-02
Chr12	irgsp1_rep	five_prime_UTR	7337906	7338043	.	-	.	Parent=Os12t0233800-02
Chr12	irgsp1_rep	five_prime_UTR	7336390	7336462	.	-	.	Parent=Os12t0233800-02
Chr12	irgsp1_rep	CDS	7336333	7336389	.	-	0	Parent=Os12t0233800-02
Chr12	irgsp1_rep	CDS	7336157	7336225	.	-	0	Parent=Os12t0233800-02
Chr12	irgsp1_rep	CDS	7335796	7335882	.	-	0	Parent=Os12t0233800-02
Chr12	irgsp1_rep	CDS	7334665	7334748	.	-	0	Parent=Os12t0233800-02
Chr12	irgsp1_rep	CDS	7334395	7334454	.	-	0	Parent=Os12t0233800-02
Chr12	irgsp1_rep	CDS	7334137	7334324	.	-	0	Parent=Os12t0233800-02
Chr12	irgsp1_rep	CDS	7333995	7334049	.	-	1	Parent=Os12t0233800-02
Chr12	irgsp1_rep	CDS	7333811	7333850	.	-	0	Parent=Os12t0233800-02
Chr12	irgsp1_rep	CDS	7333431	7333726	.	-	2	Parent=Os12t0233800-02
Chr12	irgsp1_rep	three_prime_UTR	7332809	7333430	.	-	.	Parent=Os12t0233800-02
Chr12	irgsp1_rep	three_prime_UTR	7332596	7332721	.	-	.	Parent=Os12t0233800-02
Chr12	irgsp1_rep	three_prime_UTR	7332360	7332518	.	-	.	Parent=Os12t0233800-02
Chr12	irgsp1_rep	three_prime_UTR	7331649	7331709	.	-	.	Parent=Os12t0233800-02
Chr12	irgsp1_rep	three_prime_UTR	7331466	7331553	.	-	.	Parent=Os12t0233800-02
Chr12	irgsp1_rep	three_prime_UTR	7330157	7331006	.	-	.	Parent=Os12t0233800-02
Chr12	irgsp1_rep	mRNA	7332088	7336457	.	-	.	ID=Os12t0233800-03;Name=Os12t0233800-03;Locus_id=Os12g0233800;CGSNL Gene Symbol=ZIP1A;CGSNL Gene Name=BASIC/LEUCINE ZIPPER FACTOR 1A;Oryzabase Gene Symbol Synonym(s)=OsbZIP86%2C OsZIP-1a;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 86%2C basic/leucine zipper protein 1a;Note=Similar to DNA-binding factor of bZIP class.;Transcript_evidence=AK068766 (DDBJ%2C Best hit);ORF_evidence=Q2QVD6 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=G-box binding%2C MFMR (IPR012900);NIAS_FLcDNA=J013164D05;Oryzabase=10165;Expression=AK068766;TENOR=Os12t0233800-03;KEGG=Os12t0233800-03
Chr12	irgsp1_rep	five_prime_UTR	7336390	7336457	.	-	.	Parent=Os12t0233800-03
Chr12	irgsp1_rep	CDS	7336333	7336389	.	-	0	Parent=Os12t0233800-03
Chr12	irgsp1_rep	CDS	7336157	7336225	.	-	0	Parent=Os12t0233800-03
Chr12	irgsp1_rep	CDS	7335796	7335882	.	-	0	Parent=Os12t0233800-03
Chr12	irgsp1_rep	CDS	7334665	7334748	.	-	0	Parent=Os12t0233800-03
Chr12	irgsp1_rep	CDS	7334395	7334454	.	-	0	Parent=Os12t0233800-03
Chr12	irgsp1_rep	CDS	7334137	7334324	.	-	0	Parent=Os12t0233800-03
Chr12	irgsp1_rep	CDS	7333995	7334049	.	-	1	Parent=Os12t0233800-03
Chr12	irgsp1_rep	CDS	7333811	7333850	.	-	0	Parent=Os12t0233800-03
Chr12	irgsp1_rep	CDS	7333431	7333726	.	-	2	Parent=Os12t0233800-03
Chr12	irgsp1_rep	three_prime_UTR	7332809	7333430	.	-	.	Parent=Os12t0233800-03
Chr12	irgsp1_rep	three_prime_UTR	7332596	7332721	.	-	.	Parent=Os12t0233800-03
Chr12	irgsp1_rep	three_prime_UTR	7332088	7332518	.	-	.	Parent=Os12t0233800-03
Chr12	irgsp1_rep	mRNA	7330373	7331104	.	+	.	ID=Os12t0233900-00;Name=Os12t0233900-00;Locus_id=Os12g0233900;Note=FAS1 domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001066453.1 (RefSeq);InterPro=FAS1 domain (IPR000782);TENOR=Os12t0233900-00
Chr12	irgsp1_rep	CDS	7330373	7331104	.	+	0	Parent=Os12t0233900-00
Chr12	irgsp1_rep	mRNA	7340876	7344800	.	-	.	ID=Os12t0234000-01;Name=Os12t0234000-01;Locus_id=Os12g0234000;Note=Hypothetical protein.;Transcript_evidence=AK070890 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023069D18;Oryzabase=22533;Expression=AK070890;TENOR=Os12t0234000-01;KEGG=Os12t0234000-01
Chr12	irgsp1_rep	five_prime_UTR	7343323	7344800	.	-	.	Parent=Os12t0234000-01
Chr12	irgsp1_rep	CDS	7343053	7343322	.	-	0	Parent=Os12t0234000-01
Chr12	irgsp1_rep	three_prime_UTR	7340876	7343052	.	-	.	Parent=Os12t0234000-01
Chr12	irgsp1_rep	mRNA	7383443	7384747	.	-	.	ID=Os12t0234800-00;Name=Os12t0234800-00;Locus_id=Os12g0234800;Note=Hypothetical conserved gene.;Transcript_evidence=CT835570 (DDBJ%2C Best hit);ORF_evidence=B9GCH9 (UniProt);TENOR=Os12t0234800-00
Chr12	irgsp1_rep	five_prime_UTR	7384659	7384747	.	-	.	Parent=Os12t0234800-00
Chr12	irgsp1_rep	five_prime_UTR	7384009	7384649	.	-	.	Parent=Os12t0234800-00
Chr12	irgsp1_rep	CDS	7383774	7384008	.	-	0	Parent=Os12t0234800-00
Chr12	irgsp1_rep	CDS	7383443	7383665	.	-	2	Parent=Os12t0234800-00
Chr12	irgsp1_rep	mRNA	7389654	7390556	.	+	.	ID=Os12t0235200-01;Name=Os12t0235200-01;Locus_id=Os12g0235200;Note=Conserved hypothetical protein.;Transcript_evidence=AK111288 (DDBJ%2C Best hit);ORF_evidence=NP_001063341.1 (RefSeq);NIAS_FLcDNA=002-180-H11;TENOR=Os12t0235200-01;KEGG=Os12t0235200-01
Chr12	irgsp1_rep	five_prime_UTR	7389654	7389812	.	+	.	Parent=Os12t0235200-01
Chr12	irgsp1_rep	CDS	7389813	7390154	.	+	0	Parent=Os12t0235200-01
Chr12	irgsp1_rep	CDS	7390259	7390282	.	+	0	Parent=Os12t0235200-01
Chr12	irgsp1_rep	three_prime_UTR	7390283	7390556	.	+	.	Parent=Os12t0235200-01
Chr12	irgsp1_rep	mRNA	7391763	7396007	.	+	.	ID=Os12t0235300-01;Name=Os12t0235300-01;Locus_id=Os12g0235300;Note=Conserved hypothetical protein.;Transcript_evidence=AK111358 (DDBJ%2C Best hit);ORF_evidence=A2Z1Y8 (UniProt);NIAS_FLcDNA=002-181-H03;TENOR=Os12t0235300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	7391763	7391794	.	+	.	Parent=Os12t0235300-01
Chr12	irgsp1_rep	five_prime_UTR	7391894	7391955	.	+	.	Parent=Os12t0235300-01
Chr12	irgsp1_rep	five_prime_UTR	7392057	7392062	.	+	.	Parent=Os12t0235300-01
Chr12	irgsp1_rep	CDS	7392063	7392097	.	+	0	Parent=Os12t0235300-01
Chr12	irgsp1_rep	CDS	7392501	7392555	.	+	1	Parent=Os12t0235300-01
Chr12	irgsp1_rep	three_prime_UTR	7392556	7392589	.	+	.	Parent=Os12t0235300-01
Chr12	irgsp1_rep	three_prime_UTR	7392677	7392750	.	+	.	Parent=Os12t0235300-01
Chr12	irgsp1_rep	three_prime_UTR	7393418	7393511	.	+	.	Parent=Os12t0235300-01
Chr12	irgsp1_rep	three_prime_UTR	7394624	7394691	.	+	.	Parent=Os12t0235300-01
Chr12	irgsp1_rep	three_prime_UTR	7395290	7395579	.	+	.	Parent=Os12t0235300-01
Chr12	irgsp1_rep	three_prime_UTR	7395692	7396007	.	+	.	Parent=Os12t0235300-01
Chr12	irgsp1_rep	mRNA	7409322	7411885	.	+	.	ID=Os12t0235600-01;Name=Os12t0235600-01;Locus_id=Os12g0235600;Note=Conserved hypothetical protein.;Transcript_evidence=AK287497 (DDBJ%2C Best hit);ORF_evidence=B8AHV6 (UniProt);NIAS_FLcDNA=J043033H22;TENOR=Os12t0235600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	7409322	7410361	.	+	.	Parent=Os12t0235600-01
Chr12	irgsp1_rep	five_prime_UTR	7410867	7411007	.	+	.	Parent=Os12t0235600-01
Chr12	irgsp1_rep	CDS	7411008	7411110	.	+	0	Parent=Os12t0235600-01
Chr12	irgsp1_rep	CDS	7411215	7411284	.	+	2	Parent=Os12t0235600-01
Chr12	irgsp1_rep	CDS	7411688	7411709	.	+	1	Parent=Os12t0235600-01
Chr12	irgsp1_rep	three_prime_UTR	7411710	7411885	.	+	.	Parent=Os12t0235600-01
Chr12	irgsp1_rep	mRNA	7419688	7427708	.	-	.	ID=Os12t0235650-01;Name=Os12t0235650-01;Locus_id=Os12g0235650;Note=Hypothetical gene.;Transcript_evidence=AK243220 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100043L12;TENOR=Os12t0235650-01;KEGG=Os12t0235650-01
Chr12	irgsp1_rep	five_prime_UTR	7426557	7427708	.	-	.	Parent=Os12t0235650-01
Chr12	irgsp1_rep	five_prime_UTR	7420918	7421438	.	-	.	Parent=Os12t0235650-01
Chr12	irgsp1_rep	CDS	7420255	7420917	.	-	0	Parent=Os12t0235650-01
Chr12	irgsp1_rep	three_prime_UTR	7419688	7420254	.	-	.	Parent=Os12t0235650-01
Chr12	irgsp1_rep	mRNA	7419857	7427467	.	+	.	ID=Os12t0235700-00;Name=Os12t0235700-00;Locus_id=Os12g0235700;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=BT066417 (DDBJ);ORF_evidence=Q2QVC3 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os12t0235700-00;KEGG=Os12t0235700-00
Chr12	irgsp1_rep	CDS	7419857	7421438	.	+	0	Parent=Os12t0235700-00
Chr12	irgsp1_rep	CDS	7426557	7427332	.	+	2	Parent=Os12t0235700-00
Chr12	irgsp1_rep	three_prime_UTR	7427333	7427467	.	+	.	Parent=Os12t0235700-00
Chr12	irgsp1_rep	mRNA	7430623	7434681	.	+	.	ID=Os12t0235800-01;Name=Os12t0235800-01;Locus_id=Os12g0235800;CGSNL Gene Symbol=ARS;CGSNL Gene Name=ARGININOSUCCINATE SYNTHASE;Oryzabase Gene Name Synonym(s)=Argininosuccinate synthase;Note=Similar to Argininosuccinate synthase (Fragment).;Transcript_evidence=AK071066 (DDBJ%2C Best hit);ORF_evidence=A2ZJA1 (UniProt);GO=Biological Process: arginine biosynthetic process (GO:0006526),Molecular Function: argininosuccinate synthase activity (GO:0004055),Molecular Function: ATP binding (GO:0005524);InterPro=Argininosuccinate synthase (IPR001518),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Argininosuccinate synthase%2C conserved site (IPR018223),Argininosuccinate synthetase%2C catalytic/multimerisation domain body (IPR024074);NIAS_FLcDNA=J023081B09;Oryzabase=21701;Expression=AK071066;TENOR=Os12t0235800-01;KEGG=Os12t0235800-01 (EC:6.3.4.5);B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	7430623	7430670	.	+	.	Parent=Os12t0235800-01
Chr12	irgsp1_rep	CDS	7430671	7430713	.	+	0	Parent=Os12t0235800-01
Chr12	irgsp1_rep	CDS	7430835	7430939	.	+	2	Parent=Os12t0235800-01
Chr12	irgsp1_rep	CDS	7431513	7431675	.	+	2	Parent=Os12t0235800-01
Chr12	irgsp1_rep	CDS	7431775	7431823	.	+	1	Parent=Os12t0235800-01
Chr12	irgsp1_rep	CDS	7432182	7432364	.	+	0	Parent=Os12t0235800-01
Chr12	irgsp1_rep	CDS	7432803	7432877	.	+	0	Parent=Os12t0235800-01
Chr12	irgsp1_rep	CDS	7432942	7433127	.	+	0	Parent=Os12t0235800-01
Chr12	irgsp1_rep	CDS	7433341	7433429	.	+	0	Parent=Os12t0235800-01
Chr12	irgsp1_rep	CDS	7433872	7434424	.	+	1	Parent=Os12t0235800-01
Chr12	irgsp1_rep	three_prime_UTR	7434425	7434681	.	+	.	Parent=Os12t0235800-01
Chr12	irgsp1_rep	mRNA	7432214	7434660	.	+	.	ID=Os12t0235800-02;Name=Os12t0235800-02;Locus_id=Os12g0235800;CGSNL Gene Symbol=ARS;CGSNL Gene Name=ARGININOSUCCINATE SYNTHASE;Oryzabase Gene Name Synonym(s)=Argininosuccinate synthase;Note=Similar to Argininosuccinate synthase.;Transcript_evidence=AK058994 (DDBJ%2C Best hit);ORF_evidence=A2ZJA1 (UniProt);GO=Biological Process: arginine biosynthetic process (GO:0006526),Molecular Function: argininosuccinate synthase activity (GO:0004055),Molecular Function: ATP binding (GO:0005524);InterPro=Argininosuccinate synthase (IPR001518),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Argininosuccinate synthase%2C conserved site (IPR018223),Argininosuccinate synthase%2C type 1 subfamily (IPR023434),Argininosuccinate synthetase%2C catalytic/multimerisation domain body (IPR024074);NIAS_FLcDNA=001-020-F12;Oryzabase=21701;Expression=AK058994;TENOR=Os12t0235800-02;KEGG=Os12t0235800-02 (EC:6.3.4.5);B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	7432214	7432214	.	+	.	Parent=Os12t0235800-02
Chr12	irgsp1_rep	CDS	7432215	7432364	.	+	0	Parent=Os12t0235800-02
Chr12	irgsp1_rep	CDS	7432803	7432877	.	+	0	Parent=Os12t0235800-02
Chr12	irgsp1_rep	CDS	7432942	7433127	.	+	0	Parent=Os12t0235800-02
Chr12	irgsp1_rep	CDS	7433341	7433429	.	+	0	Parent=Os12t0235800-02
Chr12	irgsp1_rep	CDS	7433872	7434424	.	+	1	Parent=Os12t0235800-02
Chr12	irgsp1_rep	three_prime_UTR	7434425	7434660	.	+	.	Parent=Os12t0235800-02
Chr12	irgsp1_rep	mRNA	7434309	7434646	.	+	.	ID=Os12t0235800-03;Name=Os12t0235800-03;Locus_id=Os12g0235800;CGSNL Gene Symbol=ARS;CGSNL Gene Name=ARGININOSUCCINATE SYNTHASE;Oryzabase Gene Name Synonym(s)=Argininosuccinate synthase;Note=Similar to Argininosuccinate synthase.;Transcript_evidence=AK058700 (DDBJ%2C Best hit);ORF_evidence=C5YU02 (UniProt);GO=Molecular Function: argininosuccinate synthase activity (GO:0004055);InterPro=Argininosuccinate synthetase%2C catalytic/multimerisation domain body (IPR024074);NIAS_FLcDNA=001-019-C03;Oryzabase=21701;Expression=AK058700;TENOR=Os12t0235800-03;KEGG=Os12t0235800-03 (EC:6.3.4.5)
Chr12	irgsp1_rep	five_prime_UTR	7434309	7434310	.	+	.	Parent=Os12t0235800-03
Chr12	irgsp1_rep	CDS	7434311	7434424	.	+	0	Parent=Os12t0235800-03
Chr12	irgsp1_rep	three_prime_UTR	7434425	7434646	.	+	.	Parent=Os12t0235800-03
Chr12	irgsp1_rep	mRNA	7441389	7446142	.	-	.	ID=Os12t0236100-00;Name=Os12t0236100-00;Locus_id=Os12g0236100;Note=Hypothetical conserved gene.;Transcript_evidence=AK376057 (DDBJ);ORF_evidence=Q2QVB9 (UniProt);TENOR=Os12t0236100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	7446104	7446142	.	-	.	Parent=Os12t0236100-00
Chr12	irgsp1_rep	CDS	7445417	7446103	.	-	0	Parent=Os12t0236100-00
Chr12	irgsp1_rep	CDS	7444151	7444917	.	-	0	Parent=Os12t0236100-00
Chr12	irgsp1_rep	CDS	7443587	7443854	.	-	1	Parent=Os12t0236100-00
Chr12	irgsp1_rep	CDS	7443273	7443494	.	-	0	Parent=Os12t0236100-00
Chr12	irgsp1_rep	CDS	7442805	7442978	.	-	0	Parent=Os12t0236100-00
Chr12	irgsp1_rep	CDS	7442480	7442685	.	-	0	Parent=Os12t0236100-00
Chr12	irgsp1_rep	CDS	7442265	7442361	.	-	1	Parent=Os12t0236100-00
Chr12	irgsp1_rep	CDS	7441393	7441692	.	-	0	Parent=Os12t0236100-00
Chr12	irgsp1_rep	three_prime_UTR	7441389	7441392	.	-	.	Parent=Os12t0236100-00
Chr12	irgsp1_rep	mRNA	7451684	7452701	.	-	.	ID=Os12t0236200-01;Name=Os12t0236200-01;Locus_id=Os12g0236200;Note=Non-protein coding transcript.;Transcript_evidence=AK108399 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-142-G01;TENOR=Os12t0236200-01
Chr12	irgsp1_rep	exon	7451684	7452701	.	-	.	Parent=Os12t0236200-01
Chr12	irgsp1_rep	mRNA	7455334	7457843	.	-	.	ID=Os12t0236225-00;Name=Os12t0236225-00;Locus_id=Os12g0236225;Note=Conserved hypothetical protein.;Transcript_evidence=AK241098 (DDBJ%2C Secondary hit);ORF_evidence=B9G7W2 (UniProt);TENOR=Os12t0236225-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	7457798	7457843	.	-	.	Parent=Os12t0236225-00
Chr12	irgsp1_rep	CDS	7457649	7457797	.	-	0	Parent=Os12t0236225-00
Chr12	irgsp1_rep	CDS	7455555	7455573	.	-	1	Parent=Os12t0236225-00
Chr12	irgsp1_rep	three_prime_UTR	7455334	7455554	.	-	.	Parent=Os12t0236225-00
Chr12	irgsp1_rep	mRNA	7476475	7480266	.	+	.	ID=Os12t0236400-01;Name=Os12t0236400-01;Locus_id=Os12g0236400;CGSNL Gene Symbol=ADKA;CGSNL Gene Name=ADENYLATE KINASE A;Oryzabase Gene Symbol Synonym(s)=Adk-a;Oryzabase Gene Name Synonym(s)=adenylate kinase a;Note=Adenylate kinase A (EC 2.7.4.3) (ATP-AMP transphosphorylase).;Transcript_evidence=AK059754 (DDBJ%2C Best hit),AK069870 (DDBJ%2C Best hit);ORF_evidence=Q08479 (UniProt);GO=Biological Process: nucleobase-containing compound metabolic process (GO:0006139),Biological Process: nucleotide phosphorylation (GO:0046939),Molecular Function: adenylate kinase activity (GO:0004017),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphotransferase activity%2C phosphate group as acceptor (GO:0016776),Molecular Function: nucleotide kinase activity (GO:0019201),Molecular Function: nucleobase-containing compound kinase activity (GO:0019205);InterPro=Adenylate kinase (IPR000850),Adenylate kinase%2C subfamily (IPR006259),Adenylate kinase%2C active site lid domain (IPR007862);NIAS_FLcDNA=006-203-B09,J023039C20;Oryzabase=13712;Expression=AK059754;TENOR=Os12t0236400-01;KEGG=Os12t0236400-01 (EC:2.7.4.3)
Chr12	irgsp1_rep	five_prime_UTR	7476475	7476570	.	+	.	Parent=Os12t0236400-01
Chr12	irgsp1_rep	CDS	7476571	7476673	.	+	0	Parent=Os12t0236400-01
Chr12	irgsp1_rep	CDS	7477952	7478097	.	+	2	Parent=Os12t0236400-01
Chr12	irgsp1_rep	CDS	7478185	7478304	.	+	0	Parent=Os12t0236400-01
Chr12	irgsp1_rep	CDS	7478425	7478592	.	+	0	Parent=Os12t0236400-01
Chr12	irgsp1_rep	CDS	7479232	7479321	.	+	0	Parent=Os12t0236400-01
Chr12	irgsp1_rep	CDS	7479921	7480019	.	+	0	Parent=Os12t0236400-01
Chr12	irgsp1_rep	three_prime_UTR	7480020	7480266	.	+	.	Parent=Os12t0236400-01
Chr12	irgsp1_rep	mRNA	7484435	7489778	.	-	.	ID=Os12t0236500-01;Name=Os12t0236500-01;Locus_id=Os12g0236500;Note=Similar to Aspartyl aminopeptidase-like protein.;Transcript_evidence=AK071207 (DDBJ%2C Best hit);ORF_evidence=Q8LF32 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aminopeptidase activity (GO:0004177),Molecular Function: zinc ion binding (GO:0008270);InterPro=Peptidase M18 (IPR001948),Peptidase M18%2C domain 2 (IPR023358);NIAS_FLcDNA=J023088P07;TENOR=Os12t0236500-01
Chr12	irgsp1_rep	five_prime_UTR	7489627	7489778	.	-	.	Parent=Os12t0236500-01
Chr12	irgsp1_rep	CDS	7489539	7489626	.	-	0	Parent=Os12t0236500-01
Chr12	irgsp1_rep	CDS	7489306	7489444	.	-	2	Parent=Os12t0236500-01
Chr12	irgsp1_rep	CDS	7489026	7489104	.	-	1	Parent=Os12t0236500-01
Chr12	irgsp1_rep	CDS	7488724	7488926	.	-	0	Parent=Os12t0236500-01
Chr12	irgsp1_rep	CDS	7487569	7487641	.	-	1	Parent=Os12t0236500-01
Chr12	irgsp1_rep	CDS	7486761	7486844	.	-	0	Parent=Os12t0236500-01
Chr12	irgsp1_rep	CDS	7486510	7486665	.	-	0	Parent=Os12t0236500-01
Chr12	irgsp1_rep	CDS	7485686	7485862	.	-	0	Parent=Os12t0236500-01
Chr12	irgsp1_rep	CDS	7485350	7485424	.	-	0	Parent=Os12t0236500-01
Chr12	irgsp1_rep	CDS	7485116	7485256	.	-	0	Parent=Os12t0236500-01
Chr12	irgsp1_rep	CDS	7484577	7484798	.	-	0	Parent=Os12t0236500-01
Chr12	irgsp1_rep	three_prime_UTR	7484435	7484576	.	-	.	Parent=Os12t0236500-01
Chr12	irgsp1_rep	mRNA	7484439	7489682	.	-	.	ID=Os12t0236500-02;Name=Os12t0236500-02;Locus_id=Os12g0236500;Note=Similar to Aspartyl aminopeptidase-like protein.;Transcript_evidence=AK103925 (DDBJ%2C Best hit);ORF_evidence=Q8LF32 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aminopeptidase activity (GO:0004177),Molecular Function: zinc ion binding (GO:0008270);InterPro=Peptidase M18 (IPR001948),Peptidase M18%2C domain 2 (IPR023358);NIAS_FLcDNA=001-013-D01;TENOR=Os12t0236500-02
Chr12	irgsp1_rep	five_prime_UTR	7489627	7489682	.	-	.	Parent=Os12t0236500-02
Chr12	irgsp1_rep	CDS	7489539	7489626	.	-	0	Parent=Os12t0236500-02
Chr12	irgsp1_rep	CDS	7489306	7489444	.	-	2	Parent=Os12t0236500-02
Chr12	irgsp1_rep	CDS	7489026	7489104	.	-	1	Parent=Os12t0236500-02
Chr12	irgsp1_rep	CDS	7488724	7488926	.	-	0	Parent=Os12t0236500-02
Chr12	irgsp1_rep	CDS	7487569	7487641	.	-	1	Parent=Os12t0236500-02
Chr12	irgsp1_rep	CDS	7486761	7486844	.	-	0	Parent=Os12t0236500-02
Chr12	irgsp1_rep	CDS	7486510	7486665	.	-	0	Parent=Os12t0236500-02
Chr12	irgsp1_rep	CDS	7485686	7485862	.	-	0	Parent=Os12t0236500-02
Chr12	irgsp1_rep	CDS	7485350	7485424	.	-	0	Parent=Os12t0236500-02
Chr12	irgsp1_rep	CDS	7485116	7485256	.	-	0	Parent=Os12t0236500-02
Chr12	irgsp1_rep	CDS	7484577	7484798	.	-	0	Parent=Os12t0236500-02
Chr12	irgsp1_rep	three_prime_UTR	7484439	7484576	.	-	.	Parent=Os12t0236500-02
Chr12	irgsp1_rep	mRNA	7496585	7498208	.	+	.	ID=Os12t0236600-01;Name=Os12t0236600-01;Locus_id=Os12g0236600;Note=Conserved hypothetical protein.;Transcript_evidence=AK063473 (DDBJ%2C Best hit);ORF_evidence=B9GCI7 (UniProt);NIAS_FLcDNA=001-116-A10;Expression=AK063473;TENOR=Os12t0236600-01;KEGG=Os12t0236600-01
Chr12	irgsp1_rep	five_prime_UTR	7496585	7496819	.	+	.	Parent=Os12t0236600-01
Chr12	irgsp1_rep	CDS	7496820	7497569	.	+	0	Parent=Os12t0236600-01
Chr12	irgsp1_rep	CDS	7497657	7497941	.	+	0	Parent=Os12t0236600-01
Chr12	irgsp1_rep	three_prime_UTR	7497942	7498208	.	+	.	Parent=Os12t0236600-01
Chr12	irgsp1_rep	mRNA	7520744	7535092	.	+	.	ID=Os12t0236700-01;Name=Os12t0236700-01;Locus_id=Os12g0236700;Note=Chaperonin Cpn60/TCP-1 family protein.;Transcript_evidence=AK121544 (DDBJ%2C Best hit);ORF_evidence=B8BNS1 (UniProt);GO=Biological Process: cellular protein metabolic process (GO:0044267),Biological Process: phosphatidylinositol metabolic process (GO:0046488),Molecular Function: ATP binding (GO:0005524),Molecular Function: phosphatidylinositol phosphate kinase activity (GO:0016307);InterPro=Chaperonin Cpn60/TCP-1 (IPR002423),Phosphatidylinositol-4-phosphate 5-kinase%2C core (IPR002498),Phosphatidylinositol-4-phosphate 5-kinase (IPR023610);NIAS_FLcDNA=J033032A16;Oryzabase=23566;Expression=AK121544;TENOR=Os12t0236700-01;KEGG=Os12t0236700-01 (EC:2.7.1.68)
Chr12	irgsp1_rep	five_prime_UTR	7520744	7521009	.	+	.	Parent=Os12t0236700-01
Chr12	irgsp1_rep	five_prime_UTR	7525446	7525486	.	+	.	Parent=Os12t0236700-01
Chr12	irgsp1_rep	CDS	7525487	7525727	.	+	0	Parent=Os12t0236700-01
Chr12	irgsp1_rep	CDS	7525835	7526843	.	+	2	Parent=Os12t0236700-01
Chr12	irgsp1_rep	CDS	7526944	7527088	.	+	1	Parent=Os12t0236700-01
Chr12	irgsp1_rep	CDS	7527186	7527533	.	+	0	Parent=Os12t0236700-01
Chr12	irgsp1_rep	CDS	7528313	7529074	.	+	0	Parent=Os12t0236700-01
Chr12	irgsp1_rep	CDS	7529157	7529476	.	+	0	Parent=Os12t0236700-01
Chr12	irgsp1_rep	CDS	7529561	7529687	.	+	1	Parent=Os12t0236700-01
Chr12	irgsp1_rep	CDS	7529772	7529939	.	+	0	Parent=Os12t0236700-01
Chr12	irgsp1_rep	CDS	7530034	7531446	.	+	0	Parent=Os12t0236700-01
Chr12	irgsp1_rep	CDS	7531543	7531803	.	+	0	Parent=Os12t0236700-01
Chr12	irgsp1_rep	CDS	7531963	7532202	.	+	0	Parent=Os12t0236700-01
Chr12	irgsp1_rep	three_prime_UTR	7532203	7535092	.	+	.	Parent=Os12t0236700-01
Chr12	irgsp1_rep	mRNA	7532431	7534962	.	+	.	ID=Os12t0236700-02;Name=Os12t0236700-02;Locus_id=Os12g0236700;Note=Non-protein coding transcript.;Transcript_evidence=AK106575 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-111-B10;Oryzabase=23566;TENOR=Os12t0236700-02
Chr12	irgsp1_rep	exon	7532431	7533270	.	+	.	Parent=Os12t0236700-02
Chr12	irgsp1_rep	exon	7533581	7533660	.	+	.	Parent=Os12t0236700-02
Chr12	irgsp1_rep	exon	7534463	7534962	.	+	.	Parent=Os12t0236700-02
Chr12	irgsp1_rep	mRNA	7536249	7538021	.	-	.	ID=Os12t0236800-01;Name=Os12t0236800-01;Locus_id=Os12g0236800;Note=Conserved hypothetical protein.;Transcript_evidence=AK241022 (DDBJ%2C Best hit);ORF_evidence=NP_001176863.1 (RefSeq);NIAS_FLcDNA=J065056J10;TENOR=Os12t0236800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	7537915	7538021	.	-	.	Parent=Os12t0236800-01
Chr12	irgsp1_rep	CDS	7537762	7537914	.	-	0	Parent=Os12t0236800-01
Chr12	irgsp1_rep	CDS	7537116	7537254	.	-	0	Parent=Os12t0236800-01
Chr12	irgsp1_rep	CDS	7536960	7537009	.	-	2	Parent=Os12t0236800-01
Chr12	irgsp1_rep	three_prime_UTR	7536855	7536959	.	-	.	Parent=Os12t0236800-01
Chr12	irgsp1_rep	three_prime_UTR	7536249	7536769	.	-	.	Parent=Os12t0236800-01
Chr12	irgsp1_rep	mRNA	7546578	7554128	.	+	.	ID=Os12t0236900-01;Name=Os12t0236900-01;Locus_id=Os12g0236900;Note=SET domain containing protein.;Transcript_evidence=AK068145 (DDBJ%2C Best hit);ORF_evidence=XP_002331687.1 (RefSeq);InterPro=Rubisco LS methyltransferase%2C substrate-binding domain (IPR015353);NIAS_FLcDNA=J013134J07;Expression=AK068145;TENOR=Os12t0236900-01;KEGG=Os12t0236900-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	7546578	7546635	.	+	.	Parent=Os12t0236900-01
Chr12	irgsp1_rep	CDS	7546636	7546986	.	+	0	Parent=Os12t0236900-01
Chr12	irgsp1_rep	CDS	7547067	7547142	.	+	0	Parent=Os12t0236900-01
Chr12	irgsp1_rep	CDS	7548176	7548381	.	+	2	Parent=Os12t0236900-01
Chr12	irgsp1_rep	CDS	7548478	7548564	.	+	0	Parent=Os12t0236900-01
Chr12	irgsp1_rep	CDS	7548653	7548745	.	+	0	Parent=Os12t0236900-01
Chr12	irgsp1_rep	CDS	7549152	7549306	.	+	0	Parent=Os12t0236900-01
Chr12	irgsp1_rep	CDS	7549450	7549534	.	+	1	Parent=Os12t0236900-01
Chr12	irgsp1_rep	CDS	7549612	7549698	.	+	0	Parent=Os12t0236900-01
Chr12	irgsp1_rep	CDS	7549781	7549900	.	+	0	Parent=Os12t0236900-01
Chr12	irgsp1_rep	CDS	7550687	7550788	.	+	0	Parent=Os12t0236900-01
Chr12	irgsp1_rep	CDS	7550883	7551050	.	+	0	Parent=Os12t0236900-01
Chr12	irgsp1_rep	three_prime_UTR	7551051	7551051	.	+	.	Parent=Os12t0236900-01
Chr12	irgsp1_rep	three_prime_UTR	7551165	7551263	.	+	.	Parent=Os12t0236900-01
Chr12	irgsp1_rep	three_prime_UTR	7553932	7554128	.	+	.	Parent=Os12t0236900-01
Chr12	irgsp1_rep	mRNA	7546667	7554263	.	-	.	ID=Os12t0237000-00;Name=Os12t0237000-00;Locus_id=Os12g0237000;Note=Hypothetical protein.;Transcript_evidence=tplb0035i18 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0237000-00
Chr12	irgsp1_rep	five_prime_UTR	7553953	7554263	.	-	.	Parent=Os12t0237000-00
Chr12	irgsp1_rep	five_prime_UTR	7550882	7551135	.	-	.	Parent=Os12t0237000-00
Chr12	irgsp1_rep	five_prime_UTR	7550701	7550787	.	-	.	Parent=Os12t0237000-00
Chr12	irgsp1_rep	five_prime_UTR	7549779	7549909	.	-	.	Parent=Os12t0237000-00
Chr12	irgsp1_rep	five_prime_UTR	7549610	7549696	.	-	.	Parent=Os12t0237000-00
Chr12	irgsp1_rep	five_prime_UTR	7549448	7549532	.	-	.	Parent=Os12t0237000-00
Chr12	irgsp1_rep	five_prime_UTR	7549149	7549303	.	-	.	Parent=Os12t0237000-00
Chr12	irgsp1_rep	five_prime_UTR	7548668	7548742	.	-	.	Parent=Os12t0237000-00
Chr12	irgsp1_rep	five_prime_UTR	7548476	7548579	.	-	.	Parent=Os12t0237000-00
Chr12	irgsp1_rep	five_prime_UTR	7548215	7548379	.	-	.	Parent=Os12t0237000-00
Chr12	irgsp1_rep	CDS	7548189	7548214	.	-	0	Parent=Os12t0237000-00
Chr12	irgsp1_rep	CDS	7547065	7547151	.	-	1	Parent=Os12t0237000-00
Chr12	irgsp1_rep	CDS	7546667	7546984	.	-	1	Parent=Os12t0237000-00
Chr12	irgsp1_rep	mRNA	7602047	7606922	.	+	.	ID=Os12t0237900-01;Name=Os12t0237900-01;Locus_id=Os12g0237900;Note=NB-ARC domain containing protein.;Transcript_evidence=AK070856 (DDBJ%2C Best hit);ORF_evidence=B9GCJ0 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J023064J22;Expression=AK070856;TENOR=Os12t0237900-01;KEGG=Os12t0237900-01
Chr12	irgsp1_rep	five_prime_UTR	7602047	7602135	.	+	.	Parent=Os12t0237900-01
Chr12	irgsp1_rep	five_prime_UTR	7602557	7602641	.	+	.	Parent=Os12t0237900-01
Chr12	irgsp1_rep	five_prime_UTR	7602769	7602782	.	+	.	Parent=Os12t0237900-01
Chr12	irgsp1_rep	CDS	7602783	7603579	.	+	0	Parent=Os12t0237900-01
Chr12	irgsp1_rep	CDS	7604671	7606756	.	+	1	Parent=Os12t0237900-01
Chr12	irgsp1_rep	three_prime_UTR	7606757	7606922	.	+	.	Parent=Os12t0237900-01
Chr12	irgsp1_rep	mRNA	7612479	7620079	.	-	.	ID=Os12t0238000-00;Name=Os12t0238000-00;Locus_id=Os12g0238000;Oryzabase Gene Symbol Synonym(s)=OsMYB3R-1%2C OsMYB3R1%2C MYB3R1;Oryzabase Gene Name Synonym(s)=O. sativa R1R2R3 MYB-1;Note=SANT domain%2C DNA binding domain containing protein.;Transcript_evidence=AJ430051 (DDBJ%2C Best hit);ORF_evidence=A3CG68 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);Oryzabase=9973;TENOR=Os12t0238000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	7619971	7620079	.	-	.	Parent=Os12t0238000-00
Chr12	irgsp1_rep	CDS	7619840	7619970	.	-	0	Parent=Os12t0238000-00
Chr12	irgsp1_rep	CDS	7619705	7619759	.	-	1	Parent=Os12t0238000-00
Chr12	irgsp1_rep	CDS	7619082	7619139	.	-	0	Parent=Os12t0238000-00
Chr12	irgsp1_rep	CDS	7617994	7618088	.	-	2	Parent=Os12t0238000-00
Chr12	irgsp1_rep	CDS	7617805	7617908	.	-	0	Parent=Os12t0238000-00
Chr12	irgsp1_rep	CDS	7617302	7617430	.	-	1	Parent=Os12t0238000-00
Chr12	irgsp1_rep	CDS	7614915	7616703	.	-	1	Parent=Os12t0238000-00
Chr12	irgsp1_rep	CDS	7614176	7614352	.	-	0	Parent=Os12t0238000-00
Chr12	irgsp1_rep	three_prime_UTR	7614151	7614175	.	-	.	Parent=Os12t0238000-00
Chr12	irgsp1_rep	three_prime_UTR	7613486	7613570	.	-	.	Parent=Os12t0238000-00
Chr12	irgsp1_rep	three_prime_UTR	7613042	7613257	.	-	.	Parent=Os12t0238000-00
Chr12	irgsp1_rep	three_prime_UTR	7612479	7612709	.	-	.	Parent=Os12t0238000-00
Chr12	irgsp1_rep	mRNA	7630605	7644294	.	-	.	ID=Os12t0238100-01;Name=Os12t0238100-01;Locus_id=Os12g0238100;Note=Exocyst complex component Sec10 family protein.;Transcript_evidence=AK064983 (DDBJ%2C Best hit);ORF_evidence=Q2QV94 (UniProt);GO=Biological Process: exocytosis (GO:0006887),Biological Process: vesicle docking (GO:0048278),Cellular Component: cytoplasm (GO:0005737);InterPro=Exocyst complex component Sec10 (IPR009976);NIAS_FLcDNA=J013001C13;Expression=AK064983;TENOR=Os12t0238100-01;KEGG=Os12t0238100-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	7644106	7644294	.	-	.	Parent=Os12t0238100-01
Chr12	irgsp1_rep	CDS	7644043	7644105	.	-	0	Parent=Os12t0238100-01
Chr12	irgsp1_rep	CDS	7643750	7643947	.	-	0	Parent=Os12t0238100-01
Chr12	irgsp1_rep	CDS	7643563	7643637	.	-	0	Parent=Os12t0238100-01
Chr12	irgsp1_rep	CDS	7642297	7642398	.	-	0	Parent=Os12t0238100-01
Chr12	irgsp1_rep	CDS	7642115	7642165	.	-	0	Parent=Os12t0238100-01
Chr12	irgsp1_rep	CDS	7641915	7642020	.	-	0	Parent=Os12t0238100-01
Chr12	irgsp1_rep	CDS	7640694	7640807	.	-	2	Parent=Os12t0238100-01
Chr12	irgsp1_rep	CDS	7640533	7640624	.	-	2	Parent=Os12t0238100-01
Chr12	irgsp1_rep	CDS	7635767	7635935	.	-	0	Parent=Os12t0238100-01
Chr12	irgsp1_rep	CDS	7635601	7635677	.	-	2	Parent=Os12t0238100-01
Chr12	irgsp1_rep	CDS	7635416	7635514	.	-	0	Parent=Os12t0238100-01
Chr12	irgsp1_rep	CDS	7635217	7635307	.	-	0	Parent=Os12t0238100-01
Chr12	irgsp1_rep	CDS	7633379	7633464	.	-	2	Parent=Os12t0238100-01
Chr12	irgsp1_rep	CDS	7633116	7633292	.	-	0	Parent=Os12t0238100-01
Chr12	irgsp1_rep	CDS	7632842	7632895	.	-	0	Parent=Os12t0238100-01
Chr12	irgsp1_rep	CDS	7632625	7632753	.	-	0	Parent=Os12t0238100-01
Chr12	irgsp1_rep	CDS	7632416	7632508	.	-	0	Parent=Os12t0238100-01
Chr12	irgsp1_rep	CDS	7632192	7632338	.	-	0	Parent=Os12t0238100-01
Chr12	irgsp1_rep	CDS	7631944	7632041	.	-	0	Parent=Os12t0238100-01
Chr12	irgsp1_rep	CDS	7631787	7631871	.	-	1	Parent=Os12t0238100-01
Chr12	irgsp1_rep	CDS	7631374	7631432	.	-	0	Parent=Os12t0238100-01
Chr12	irgsp1_rep	CDS	7631199	7631297	.	-	1	Parent=Os12t0238100-01
Chr12	irgsp1_rep	CDS	7631035	7631118	.	-	1	Parent=Os12t0238100-01
Chr12	irgsp1_rep	CDS	7630875	7630947	.	-	1	Parent=Os12t0238100-01
Chr12	irgsp1_rep	three_prime_UTR	7630605	7630874	.	-	.	Parent=Os12t0238100-01
Chr12	irgsp1_rep	mRNA	7630598	7635290	.	-	.	ID=Os12t0238100-02;Name=Os12t0238100-02;Locus_id=Os12g0238100;Note=Similar to Exocyst complex component 5.;Transcript_evidence=AK062178 (DDBJ%2C Best hit);ORF_evidence=Q2QV94 (UniProt);GO=Biological Process: exocytosis (GO:0006887),Biological Process: vesicle docking (GO:0048278),Cellular Component: cytoplasm (GO:0005737);InterPro=Exocyst complex component Sec10 (IPR009976);NIAS_FLcDNA=001-046-D06;Expression=AK062178;TENOR=Os12t0238100-02;KEGG=Os12t0238100-02
Chr12	irgsp1_rep	five_prime_UTR	7635290	7635290	.	-	.	Parent=Os12t0238100-02
Chr12	irgsp1_rep	CDS	7635217	7635289	.	-	0	Parent=Os12t0238100-02
Chr12	irgsp1_rep	CDS	7633379	7633464	.	-	2	Parent=Os12t0238100-02
Chr12	irgsp1_rep	CDS	7633116	7633292	.	-	0	Parent=Os12t0238100-02
Chr12	irgsp1_rep	CDS	7632842	7632895	.	-	0	Parent=Os12t0238100-02
Chr12	irgsp1_rep	CDS	7632625	7632753	.	-	0	Parent=Os12t0238100-02
Chr12	irgsp1_rep	CDS	7632416	7632508	.	-	0	Parent=Os12t0238100-02
Chr12	irgsp1_rep	CDS	7632192	7632338	.	-	0	Parent=Os12t0238100-02
Chr12	irgsp1_rep	CDS	7631944	7632041	.	-	0	Parent=Os12t0238100-02
Chr12	irgsp1_rep	CDS	7631787	7631871	.	-	1	Parent=Os12t0238100-02
Chr12	irgsp1_rep	CDS	7631374	7631432	.	-	0	Parent=Os12t0238100-02
Chr12	irgsp1_rep	CDS	7631199	7631297	.	-	1	Parent=Os12t0238100-02
Chr12	irgsp1_rep	CDS	7631035	7631118	.	-	1	Parent=Os12t0238100-02
Chr12	irgsp1_rep	CDS	7630875	7630947	.	-	1	Parent=Os12t0238100-02
Chr12	irgsp1_rep	three_prime_UTR	7630598	7630874	.	-	.	Parent=Os12t0238100-02
Chr12	irgsp1_rep	mRNA	7647796	7648241	.	-	.	ID=Os12t0238400-00;Name=Os12t0238400-00;Locus_id=Os12g0238400;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q654G2 (UniProt);TENOR=Os12t0238400-00
Chr12	irgsp1_rep	CDS	7648128	7648241	.	-	0	Parent=Os12t0238400-00
Chr12	irgsp1_rep	CDS	7647796	7647957	.	-	0	Parent=Os12t0238400-00
Chr12	irgsp1_rep	mRNA	7650139	7650584	.	+	.	ID=Os12t0238550-00;Name=Os12t0238550-00;Locus_id=Os12g0238550;Note=Similar to Chitinase 6.;Transcript_evidence=BT063055 (DDBJ);ORF_evidence=Q6K8R2 (UniProt);GO=Molecular Function: chitin binding (GO:0008061);InterPro=Chitin-binding%2C type 1 (IPR001002);TENOR=Os12t0238550-00
Chr12	irgsp1_rep	five_prime_UTR	7650139	7650277	.	+	.	Parent=Os12t0238550-00
Chr12	irgsp1_rep	CDS	7650278	7650430	.	+	0	Parent=Os12t0238550-00
Chr12	irgsp1_rep	three_prime_UTR	7650431	7650584	.	+	.	Parent=Os12t0238550-00
Chr12	irgsp1_rep	mRNA	7665115	7669540	.	+	.	ID=Os12t0238900-01;Name=Os12t0238900-01;Locus_id=Os12g0238900;Note=Similar to HGA6.;Transcript_evidence=AK109804 (DDBJ%2C Best hit);ORF_evidence=Q2QV89 (UniProt);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyltransferase AER61%2C uncharacterised (IPR007657);NIAS_FLcDNA=002-147-F10;Oryzabase=15276;Expression=AK109804;TENOR=Os12t0238900-01;KEGG=Os12t0238900-01
Chr12	irgsp1_rep	five_prime_UTR	7665115	7665193	.	+	.	Parent=Os12t0238900-01
Chr12	irgsp1_rep	CDS	7665194	7665461	.	+	0	Parent=Os12t0238900-01
Chr12	irgsp1_rep	CDS	7665570	7665662	.	+	2	Parent=Os12t0238900-01
Chr12	irgsp1_rep	CDS	7668104	7668352	.	+	2	Parent=Os12t0238900-01
Chr12	irgsp1_rep	CDS	7668398	7669350	.	+	2	Parent=Os12t0238900-01
Chr12	irgsp1_rep	three_prime_UTR	7669351	7669540	.	+	.	Parent=Os12t0238900-01
Chr12	irgsp1_rep	mRNA	7678711	7686107	.	-	.	ID=Os12t0239000-01;Name=Os12t0239000-01;Locus_id=Os12g0239000;Note=Conserved hypothetical protein.;Transcript_evidence=AK101424 (DDBJ%2C Best hit);ORF_evidence=A3CG73 (UniProt);NIAS_FLcDNA=J033038E12;Expression=AK101424;TENOR=Os12t0239000-01;KEGG=Os12t0239000-01
Chr12	irgsp1_rep	five_prime_UTR	7685646	7686107	.	-	.	Parent=Os12t0239000-01
Chr12	irgsp1_rep	five_prime_UTR	7684994	7685089	.	-	.	Parent=Os12t0239000-01
Chr12	irgsp1_rep	CDS	7684807	7684993	.	-	0	Parent=Os12t0239000-01
Chr12	irgsp1_rep	CDS	7684572	7684677	.	-	2	Parent=Os12t0239000-01
Chr12	irgsp1_rep	CDS	7683683	7683806	.	-	1	Parent=Os12t0239000-01
Chr12	irgsp1_rep	CDS	7682213	7682965	.	-	0	Parent=Os12t0239000-01
Chr12	irgsp1_rep	CDS	7679978	7681925	.	-	0	Parent=Os12t0239000-01
Chr12	irgsp1_rep	CDS	7679020	7679426	.	-	2	Parent=Os12t0239000-01
Chr12	irgsp1_rep	three_prime_UTR	7678711	7679019	.	-	.	Parent=Os12t0239000-01
Chr12	irgsp1_rep	mRNA	7688973	7699212	.	-	.	ID=Os12t0239200-01;Name=Os12t0239200-01;Locus_id=Os12g0239200;Note=Conserved hypothetical protein.;Transcript_evidence=AK068944 (DDBJ%2C Best hit);ORF_evidence=A2ZJC1 (UniProt);NIAS_FLcDNA=J013170G22;Expression=AK068944;TENOR=Os12t0239200-01;KEGG=Os12t0239200-01
Chr12	irgsp1_rep	five_prime_UTR	7698838	7699212	.	-	.	Parent=Os12t0239200-01
Chr12	irgsp1_rep	five_prime_UTR	7697515	7697631	.	-	.	Parent=Os12t0239200-01
Chr12	irgsp1_rep	CDS	7697328	7697514	.	-	0	Parent=Os12t0239200-01
Chr12	irgsp1_rep	CDS	7697066	7697171	.	-	2	Parent=Os12t0239200-01
Chr12	irgsp1_rep	CDS	7695001	7695124	.	-	1	Parent=Os12t0239200-01
Chr12	irgsp1_rep	CDS	7694124	7694897	.	-	0	Parent=Os12t0239200-01
Chr12	irgsp1_rep	CDS	7691660	7693592	.	-	0	Parent=Os12t0239200-01
Chr12	irgsp1_rep	CDS	7689324	7689754	.	-	2	Parent=Os12t0239200-01
Chr12	irgsp1_rep	three_prime_UTR	7688973	7689323	.	-	.	Parent=Os12t0239200-01
Chr12	irgsp1_rep	mRNA	7709120	7710951	.	+	.	ID=Os12t0239300-01;Name=Os12t0239300-01;Locus_id=Os12g0239300;Note=Conserved hypothetical protein.;Transcript_evidence=AK067904 (DDBJ%2C Best hit);ORF_evidence=B8ATT0 (UniProt);NIAS_FLcDNA=J013123H01;TENOR=Os12t0239300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	7709120	7710736	.	+	.	Parent=Os12t0239300-01
Chr12	irgsp1_rep	CDS	7710737	7710951	.	+	0	Parent=Os12t0239300-01
Chr12	irgsp1_rep	mRNA	7709883	7710951	.	+	.	ID=Os12t0239300-02;Name=Os12t0239300-02;Locus_id=Os12g0239300;Note=Similar to Mov34/MPN/PAD-1 family protein.;Transcript_evidence=AK109345 (DDBJ%2C Best hit);ORF_evidence=Q53RR0 (UniProt);NIAS_FLcDNA=006-203-A08;Expression=AK109345;TENOR=Os12t0239300-02;KEGG=Os12t0239300-02
Chr12	irgsp1_rep	five_prime_UTR	7709883	7710047	.	+	.	Parent=Os12t0239300-02
Chr12	irgsp1_rep	CDS	7710048	7710341	.	+	0	Parent=Os12t0239300-02
Chr12	irgsp1_rep	three_prime_UTR	7710342	7710951	.	+	.	Parent=Os12t0239300-02
Chr12	irgsp1_rep	mRNA	7731409	7731961	.	-	.	ID=Os12t0239900-01;Name=Os12t0239900-01;Locus_id=Os12g0239900;CGSNL Gene Symbol=PDR22;CGSNL Gene Name=PLEIOTROPIC DRUG RESISTANCE 22;Oryzabase Gene Symbol Synonym(s)=OsABCG49%2C OsPDR22%2C OsABCG49_1%2C OsABCG49_2;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 49%2C pleiotropic drug resistance 22;Note=Similar to PDR-like ABC transporter.;Transcript_evidence=AK107869 (DDBJ%2C Best hit);ORF_evidence=Q8GU83 (UniProt);NIAS_FLcDNA=002-134-C05;Oryzabase=12022;Expression=AK107869;TENOR=Os12t0239900-01;KEGG=Os12t0239900-01
Chr12	irgsp1_rep	CDS	7731743	7731961	.	-	0	Parent=Os12t0239900-01
Chr12	irgsp1_rep	three_prime_UTR	7731409	7731742	.	-	.	Parent=Os12t0239900-01
Chr12	irgsp1_rep	mRNA	7748252	7749234	.	-	.	ID=Os12t0240000-01;Name=Os12t0240000-01;Locus_id=Os12g0240000;Note=Conserved hypothetical protein.;Transcript_evidence=AK061457 (DDBJ%2C Best hit);ORF_evidence=A2ZJC6 (UniProt);NIAS_FLcDNA=006-307-H05;Expression=AK061457;TENOR=Os12t0240000-01;KEGG=Os12t0240000-01
Chr12	irgsp1_rep	five_prime_UTR	7749201	7749234	.	-	.	Parent=Os12t0240000-01
Chr12	irgsp1_rep	CDS	7748697	7749200	.	-	0	Parent=Os12t0240000-01
Chr12	irgsp1_rep	three_prime_UTR	7748252	7748696	.	-	.	Parent=Os12t0240000-01
Chr12	irgsp1_rep	mRNA	7798181	7798492	.	+	.	ID=Os12t0240850-00;Name=Os12t0240850-00;Locus_id=Os12g0240850;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Similar to POT family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QV74 (UniProt);Oryzabase=23694;TENOR=Os12t0240850-00;KEGG=Os12t0240850-00
Chr12	irgsp1_rep	CDS	7798181	7798492	.	+	0	Parent=Os12t0240850-00
Chr12	irgsp1_rep	mRNA	7798524	7798850	.	+	.	ID=Os12t0240875-00;Name=Os12t0240875-00;Locus_id=Os12g0240875;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=TGF-beta receptor%2C type I/II extracellular region domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QV74 (UniProt);Oryzabase=23694;TENOR=Os12t0240875-00;KEGG=Os12t0240875-00
Chr12	irgsp1_rep	CDS	7798524	7798850	.	+	0	Parent=Os12t0240875-00
Chr12	irgsp1_rep	mRNA	7801961	7807354	.	-	.	ID=Os12t0240900-01;Name=Os12t0240900-01;Locus_id=Os12g0240900;RAP-DB Gene Symbol Synonym(s)=NOMT%2C OsNOMT%2C COMTL3%2C OsCOMTL3;RAP-DB Gene Name Synonym(s)=NARINGENIN 7-O-METHYLTRANSFERASE%2C naringenin 7-O-methyltransferase%2C CAFFEIC ACID 3-O-METHYLTRANSFERASE LIKE 3;CGSNL Gene Symbol=NOMT;CGSNL Gene Name=NARINGENIN 7-O-METHYLTRANSFERASE;Oryzabase Gene Symbol Synonym(s)=OsNOMT%2C COMTL3%2C OsCOMTL3;Oryzabase Gene Name Synonym(s)=naringenin 7-O-methyltransferase%2C CAFFEIC ACID 3-O-METHYLTRANSFERASE LIKE 3;Note=Naringenin 7-O-methyltransferase%2C Biosynthesis of flavonoid phytoalexin sakuranetin;Transcript_evidence=AB692949;ORF_evidence=Q0IP69,I2FFE9;GO=Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: O-methyltransferase activity (GO:0008171),Molecular Function: protein dimerization activity (GO:0046983);InterPro=O-methyltransferase COMT-type (IPR016461),Winged helix-turn-helix DNA-binding domain (IPR011991),Plant methyltransferase dimerisation (IPR012967),S-adenosyl-L-methionine-dependent methyltransferase (IPR029063),O-methyltransferase%2C family 2 (IPR001077);Manual Curation=June 8%2C 2016;Literature_PMID=22493492;Oryzabase=10420;TENOR=Os12t0240900-00
Chr12	irgsp1_rep	CDS	7806918	7807354	.	-	0	Parent=Os12t0240900-01
Chr12	irgsp1_rep	CDS	7803219	7803544	.	-	1	Parent=Os12t0240900-01
Chr12	irgsp1_rep	CDS	7802832	7802896	.	-	2	Parent=Os12t0240900-01
Chr12	irgsp1_rep	CDS	7802137	7802436	.	-	0	Parent=Os12t0240900-01
Chr12	irgsp1_rep	three_prime_UTR	7801961	7802136	.	-	.	Parent=Os12t0240900-01
Chr12	irgsp1_rep	mRNA	7811865	7811977	.	+	.	ID=Os12t0241001-00;Name=Os12t0241001-00;Locus_id=Os12g0241001;Note=Non-protein coding transcript.;Transcript_evidence=EU942813 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0241001-00
Chr12	irgsp1_rep	exon	7811865	7811977	.	+	.	Parent=Os12t0241001-00
Chr12	irgsp1_rep	mRNA	7820306	7825039	.	-	.	ID=Os12t0241100-01;Name=Os12t0241100-01;Locus_id=Os12g0241100;Note=Iojap-related protein family protein.;Transcript_evidence=AK068925 (DDBJ%2C Best hit);ORF_evidence=B8BP17 (UniProt);InterPro=Ribosome-associated%2C Iojap-like (IPR004394);NIAS_FLcDNA=J023001D05;Expression=AK068925;TENOR=Os12t0241100-01;KEGG=Os12t0241100-01
Chr12	irgsp1_rep	five_prime_UTR	7825018	7825039	.	-	.	Parent=Os12t0241100-01
Chr12	irgsp1_rep	CDS	7824721	7825017	.	-	0	Parent=Os12t0241100-01
Chr12	irgsp1_rep	CDS	7822922	7823009	.	-	0	Parent=Os12t0241100-01
Chr12	irgsp1_rep	CDS	7822066	7822163	.	-	2	Parent=Os12t0241100-01
Chr12	irgsp1_rep	CDS	7820543	7820611	.	-	0	Parent=Os12t0241100-01
Chr12	irgsp1_rep	three_prime_UTR	7820306	7820542	.	-	.	Parent=Os12t0241100-01
Chr12	irgsp1_rep	mRNA	7874284	7875247	.	-	.	ID=Os12t0242100-01;Name=Os12t0242100-01;Locus_id=Os12g0242100;Note=Similar to Glycine-rich cell wall structural protein 1 precursor.;Transcript_evidence=AK109396 (DDBJ%2C Best hit);ORF_evidence=Q2QV64 (UniProt);NIAS_FLcDNA=006-212-G04;Expression=AK109396;TENOR=Os12t0242100-01;KEGG=Os12t0242100-01
Chr12	irgsp1_rep	five_prime_UTR	7875208	7875247	.	-	.	Parent=Os12t0242100-01
Chr12	irgsp1_rep	CDS	7874440	7875207	.	-	0	Parent=Os12t0242100-01
Chr12	irgsp1_rep	three_prime_UTR	7874284	7874439	.	-	.	Parent=Os12t0242100-01
Chr12	irgsp1_rep	mRNA	7878268	7878888	.	-	.	ID=Os12t0242200-00;Name=Os12t0242200-00;Locus_id=Os12g0242200;Note=Protein of unknown function DUF1218 domain containing protein.;Transcript_evidence=AK251095 (DDBJ);ORF_evidence=Q2QV62 (UniProt);InterPro=Protein of unknown function DUF1218 (IPR009606);TENOR=Os12t0242200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	7878698	7878888	.	-	.	Parent=Os12t0242200-00
Chr12	irgsp1_rep	CDS	7878672	7878697	.	-	0	Parent=Os12t0242200-00
Chr12	irgsp1_rep	CDS	7878268	7878610	.	-	1	Parent=Os12t0242200-00
Chr12	irgsp1_rep	mRNA	7892375	7893898	.	+	.	ID=Os12t0242500-01;Name=Os12t0242500-01;Locus_id=Os12g0242500;Note=Conserved hypothetical protein.;Transcript_evidence=AK242679 (DDBJ%2C Best hit);ORF_evidence=NP_001176868.1 (RefSeq);NIAS_FLcDNA=J090032G12;TENOR=Os12t0242500-01;KEGG=Os12t0242500-01
Chr12	irgsp1_rep	five_prime_UTR	7892375	7892516	.	+	.	Parent=Os12t0242500-01
Chr12	irgsp1_rep	CDS	7892517	7893506	.	+	0	Parent=Os12t0242500-01
Chr12	irgsp1_rep	three_prime_UTR	7893507	7893898	.	+	.	Parent=Os12t0242500-01
Chr12	irgsp1_rep	mRNA	7915608	7918642	.	+	.	ID=Os12t0242700-01;Name=Os12t0242700-01;Locus_id=Os12g0242700;CGSNL Gene Symbol=KAR;CGSNL Gene Name=BETA KETOACYL REDUCTASE;Oryzabase Gene Name Synonym(s)=Beta-ketoacyl reductase%2C 3-oxoacyl-reductase;Note=Similar to 3-oxoacyl-[acyl-carrier-protein] reductase 1%2C chloroplast precursor (EC 1.1.1.100) (3-ketoacyl-acyl carrier protein reductase 1) (Beta- keto acyl-carrier protein reductase 1).;Transcript_evidence=AK109188 (DDBJ%2C Best hit);ORF_evidence=D8KXZ3 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: metabolic process (GO:0008152),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity (GO:0004316),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: NAD binding (GO:0051287);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),3-oxoacyl-(acyl-carrier-protein) reductase (IPR011284),NAD(P)-binding domain (IPR016040),Short-chain dehydrogenase/reductase%2C conserved site (IPR020904);NIAS_FLcDNA=002-156-A12;Oryzabase=8502;Expression=AK109188;TENOR=Os12t0242700-01;KEGG=Os12t0242700-01 (EC:1.1.1.100)
Chr12	irgsp1_rep	five_prime_UTR	7915608	7915646	.	+	.	Parent=Os12t0242700-01
Chr12	irgsp1_rep	CDS	7915647	7915756	.	+	0	Parent=Os12t0242700-01
Chr12	irgsp1_rep	CDS	7916057	7916207	.	+	1	Parent=Os12t0242700-01
Chr12	irgsp1_rep	CDS	7916706	7916759	.	+	0	Parent=Os12t0242700-01
Chr12	irgsp1_rep	CDS	7916870	7916950	.	+	0	Parent=Os12t0242700-01
Chr12	irgsp1_rep	CDS	7917146	7917191	.	+	0	Parent=Os12t0242700-01
Chr12	irgsp1_rep	CDS	7917293	7917387	.	+	2	Parent=Os12t0242700-01
Chr12	irgsp1_rep	CDS	7917563	7917595	.	+	0	Parent=Os12t0242700-01
Chr12	irgsp1_rep	CDS	7917923	7918057	.	+	0	Parent=Os12t0242700-01
Chr12	irgsp1_rep	CDS	7918175	7918268	.	+	0	Parent=Os12t0242700-01
Chr12	irgsp1_rep	CDS	7918354	7918432	.	+	2	Parent=Os12t0242700-01
Chr12	irgsp1_rep	CDS	7918522	7918558	.	+	1	Parent=Os12t0242700-01
Chr12	irgsp1_rep	three_prime_UTR	7918559	7918642	.	+	.	Parent=Os12t0242700-01
Chr12	irgsp1_rep	mRNA	7919575	7920541	.	+	.	ID=Os12t0242800-01;Name=Os12t0242800-01;Locus_id=Os12g0242800;Note=TRAM%2C LAG1 and CLN8 homology domain containing protein.;Transcript_evidence=AK107948 (DDBJ%2C Best hit);ORF_evidence=NP_001152448.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=TRAM/LAG1/CLN8 homology domain (IPR006634);NIAS_FLcDNA=002-135-B08;Expression=AK107948;TENOR=Os12t0242800-01;KEGG=Os12t0242800-01
Chr12	irgsp1_rep	five_prime_UTR	7919575	7919619	.	+	.	Parent=Os12t0242800-01
Chr12	irgsp1_rep	CDS	7919620	7920405	.	+	0	Parent=Os12t0242800-01
Chr12	irgsp1_rep	three_prime_UTR	7920406	7920541	.	+	.	Parent=Os12t0242800-01
Chr12	irgsp1_rep	mRNA	7921635	7924927	.	-	.	ID=Os12t0242900-01;Name=Os12t0242900-01;Locus_id=Os12g0242900;Note=DNA polymerase alpha%2C subunit B domain containing protein.;Transcript_evidence=AK064505 (DDBJ%2C Best hit);ORF_evidence=XP_002888612.1 (RefSeq);GO=Biological Process: DNA replication (GO:0006260),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed DNA polymerase activity (GO:0003887);InterPro=DNA polymerase alpha/epsilon%2C subunit B (IPR007185),DNA polymerase alpha%2C subunit B (IPR016722);NIAS_FLcDNA=002-111-D09;Expression=AK064505;TENOR=Os12t0242900-01;KEGG=Os12t0242900-01
Chr12	irgsp1_rep	five_prime_UTR	7924927	7924927	.	-	.	Parent=Os12t0242900-01
Chr12	irgsp1_rep	CDS	7924837	7924926	.	-	0	Parent=Os12t0242900-01
Chr12	irgsp1_rep	CDS	7924669	7924748	.	-	0	Parent=Os12t0242900-01
Chr12	irgsp1_rep	CDS	7924501	7924576	.	-	1	Parent=Os12t0242900-01
Chr12	irgsp1_rep	CDS	7924263	7924430	.	-	0	Parent=Os12t0242900-01
Chr12	irgsp1_rep	CDS	7923743	7923847	.	-	0	Parent=Os12t0242900-01
Chr12	irgsp1_rep	CDS	7923572	7923667	.	-	0	Parent=Os12t0242900-01
Chr12	irgsp1_rep	CDS	7923398	7923490	.	-	0	Parent=Os12t0242900-01
Chr12	irgsp1_rep	CDS	7923108	7923149	.	-	0	Parent=Os12t0242900-01
Chr12	irgsp1_rep	CDS	7922974	7923015	.	-	0	Parent=Os12t0242900-01
Chr12	irgsp1_rep	CDS	7922437	7922567	.	-	0	Parent=Os12t0242900-01
Chr12	irgsp1_rep	CDS	7922229	7922355	.	-	1	Parent=Os12t0242900-01
Chr12	irgsp1_rep	CDS	7921942	7922094	.	-	0	Parent=Os12t0242900-01
Chr12	irgsp1_rep	three_prime_UTR	7921635	7921941	.	-	.	Parent=Os12t0242900-01
Chr12	irgsp1_rep	mRNA	7921943	7925615	.	+	.	ID=Os12t0242975-00;Name=Os12t0242975-00;Locus_id=Os12g0242975;Note=Non-protein coding transcript.;Transcript_evidence=tplb0045b18 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os12t0242975-00
Chr12	irgsp1_rep	exon	7921943	7922092	.	+	.	Parent=Os12t0242975-00
Chr12	irgsp1_rep	exon	7922227	7922348	.	+	.	Parent=Os12t0242975-00
Chr12	irgsp1_rep	exon	7922423	7922578	.	+	.	Parent=Os12t0242975-00
Chr12	irgsp1_rep	exon	7923074	7923149	.	+	.	Parent=Os12t0242975-00
Chr12	irgsp1_rep	exon	7923398	7923490	.	+	.	Parent=Os12t0242975-00
Chr12	irgsp1_rep	exon	7923572	7923660	.	+	.	Parent=Os12t0242975-00
Chr12	irgsp1_rep	exon	7923728	7923882	.	+	.	Parent=Os12t0242975-00
Chr12	irgsp1_rep	exon	7924292	7924432	.	+	.	Parent=Os12t0242975-00
Chr12	irgsp1_rep	exon	7924497	7924566	.	+	.	Parent=Os12t0242975-00
Chr12	irgsp1_rep	exon	7924656	7924747	.	+	.	Parent=Os12t0242975-00
Chr12	irgsp1_rep	exon	7924836	7924932	.	+	.	Parent=Os12t0242975-00
Chr12	irgsp1_rep	exon	7925005	7925389	.	+	.	Parent=Os12t0242975-00
Chr12	irgsp1_rep	exon	7925500	7925615	.	+	.	Parent=Os12t0242975-00
Chr12	irgsp1_rep	mRNA	7931702	7935048	.	-	.	ID=Os12t0243050-01;Name=Os12t0243050-01;Locus_id=Os12g0243050;Note=Similar to Leucine Rich Repeat family protein.;Transcript_evidence=AK288298 (DDBJ%2C Best hit);ORF_evidence=Q2QU63 (UniProt);NIAS_FLcDNA=J090019N21;TENOR=Os12t0243050-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	7932300	7935048	.	-	.	Parent=Os12t0243050-01
Chr12	irgsp1_rep	CDS	7932006	7932299	.	-	0	Parent=Os12t0243050-01
Chr12	irgsp1_rep	three_prime_UTR	7931702	7932005	.	-	.	Parent=Os12t0243050-01
Chr12	irgsp1_rep	mRNA	7979247	7983248	.	+	.	ID=Os12t0244000-01;Name=Os12t0244000-01;Locus_id=Os12g0244000;Note=Conserved hypothetical protein.;Transcript_evidence=AK106408 (DDBJ%2C Best hit);ORF_evidence=Q9XHW6 (UniProt);NIAS_FLcDNA=002-102-H05;TENOR=Os12t0244000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	7979247	7980042	.	+	.	Parent=Os12t0244000-01
Chr12	irgsp1_rep	five_prime_UTR	7980141	7980273	.	+	.	Parent=Os12t0244000-01
Chr12	irgsp1_rep	five_prime_UTR	7980886	7980957	.	+	.	Parent=Os12t0244000-01
Chr12	irgsp1_rep	five_prime_UTR	7982061	7982194	.	+	.	Parent=Os12t0244000-01
Chr12	irgsp1_rep	five_prime_UTR	7982315	7983076	.	+	.	Parent=Os12t0244000-01
Chr12	irgsp1_rep	CDS	7983077	7983248	.	+	0	Parent=Os12t0244000-01
Chr12	irgsp1_rep	mRNA	7986193	7991848	.	+	.	ID=Os12t0244100-01;Name=Os12t0244100-01;Locus_id=Os12g0244100;RAP-DB Gene Symbol Synonym(s)=FLO11%2C OsHsp70cp-2%2C OsHsp70CP2;RAP-DB Gene Name Synonym(s)=FLOURY ENDOSPERM11%2C heat shock protein 70 chloroplast protein 2;CGSNL Gene Symbol=HSP70CP2;CGSNL Gene Name=HEAT SHOCK PROTEIN 70KD CHLOROPLAST PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsHsp70CP2;Oryzabase Gene Name Synonym(s)=heat shock protein 70 chloroplast protein 2;Note=Plastid heat shock protein 70%2C Amyloplast development%2C Regulation of protein import into amyloplast;Transcript_evidence=AK121949;ORF_evidence=Q2QV45;GO=Biological Process: protein folding (GO:0006457),Molecular Function: ATP binding (GO:0005524),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein 70kD%2C peptide-binding domain superfamily (IPR029047),Heat shock protein 70kD%2C C-terminal domain superfamily (IPR029048),Heat shock protein 70 family (IPR013126),Chaperone DnaK (IPR012725),Heat shock protein 70%2C conserved site (IPR018181);NIAS_FLcDNA=J033107J07;Manual Curation=December 7%2C 2018;Literature_PMID=30466604,23394789;Oryzabase=13067;Expression=AK121949;TENOR=Os12t0244100-01;KEGG=Os12t0244100-01;Subcellular location=plastid (GO:0009536)
Chr12	irgsp1_rep	five_prime_UTR	7986193	7986240	.	+	.	Parent=Os12t0244100-01
Chr12	irgsp1_rep	CDS	7986241	7986771	.	+	0	Parent=Os12t0244100-01
Chr12	irgsp1_rep	CDS	7987618	7987870	.	+	0	Parent=Os12t0244100-01
Chr12	irgsp1_rep	CDS	7988509	7988588	.	+	2	Parent=Os12t0244100-01
Chr12	irgsp1_rep	CDS	7989407	7989549	.	+	0	Parent=Os12t0244100-01
Chr12	irgsp1_rep	CDS	7989639	7989737	.	+	1	Parent=Os12t0244100-01
Chr12	irgsp1_rep	CDS	7989843	7990032	.	+	1	Parent=Os12t0244100-01
Chr12	irgsp1_rep	CDS	7990278	7990676	.	+	0	Parent=Os12t0244100-01
Chr12	irgsp1_rep	CDS	7991133	7991534	.	+	0	Parent=Os12t0244100-01
Chr12	irgsp1_rep	three_prime_UTR	7991535	7991848	.	+	.	Parent=Os12t0244100-01
Chr12	irgsp1_rep	mRNA	7986445	7991842	.	+	.	ID=Os12t0244100-02;Name=Os12t0244100-02;Locus_id=Os12g0244100;CGSNL Gene Symbol=HSP70CP2;CGSNL Gene Name=HEAT SHOCK PROTEIN 70KD CHLOROPLAST PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsHsp70CP2;Oryzabase Gene Name Synonym(s)=heat shock protein 70 chloroplast protein 2;Note=Similar to stromal 70 kDa heat shock-related protein.;Transcript_evidence=AK072071 (DDBJ%2C Best hit);ORF_evidence=C7ENF7 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: ATP binding (GO:0005524),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein Hsp70 (IPR001023),Chaperone DnaK (IPR012725),Heat shock protein 70 (IPR013126),Heat shock protein 70%2C conserved site (IPR018181);NIAS_FLcDNA=J013111L16;Oryzabase=13067;Expression=AK072071;TENOR=Os12t0244100-02;KEGG=Os12t0244100-02
Chr12	irgsp1_rep	CDS	7986445	7986771	.	+	0	Parent=Os12t0244100-02
Chr12	irgsp1_rep	CDS	7987618	7987870	.	+	0	Parent=Os12t0244100-02
Chr12	irgsp1_rep	CDS	7988509	7988588	.	+	2	Parent=Os12t0244100-02
Chr12	irgsp1_rep	CDS	7989407	7989549	.	+	0	Parent=Os12t0244100-02
Chr12	irgsp1_rep	CDS	7989639	7989737	.	+	1	Parent=Os12t0244100-02
Chr12	irgsp1_rep	CDS	7989843	7990032	.	+	1	Parent=Os12t0244100-02
Chr12	irgsp1_rep	CDS	7990278	7990676	.	+	0	Parent=Os12t0244100-02
Chr12	irgsp1_rep	CDS	7991133	7991534	.	+	0	Parent=Os12t0244100-02
Chr12	irgsp1_rep	three_prime_UTR	7991535	7991842	.	+	.	Parent=Os12t0244100-02
Chr12	irgsp1_rep	mRNA	7987807	7991824	.	+	.	ID=Os12t0244100-03;Name=Os12t0244100-03;Locus_id=Os12g0244100;CGSNL Gene Symbol=HSP70CP2;CGSNL Gene Name=HEAT SHOCK PROTEIN 70KD CHLOROPLAST PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsHsp70CP2;Oryzabase Gene Name Synonym(s)=heat shock protein 70 chloroplast protein 2;Note=Similar to stromal 70 kDa heat shock-related protein.;Transcript_evidence=AK119535 (DDBJ%2C Best hit);ORF_evidence=D3YE92 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Heat shock protein Hsp70 (IPR001023),Heat shock protein 70 (IPR013126),Heat shock protein 70%2C conserved site (IPR018181);NIAS_FLcDNA=001-204-B03;Oryzabase=13067;Expression=AK119535;TENOR=Os12t0244100-03;KEGG=Os12t0244100-03
Chr12	irgsp1_rep	CDS	7987807	7987870	.	+	0	Parent=Os12t0244100-03
Chr12	irgsp1_rep	CDS	7988509	7988588	.	+	2	Parent=Os12t0244100-03
Chr12	irgsp1_rep	CDS	7989407	7989549	.	+	0	Parent=Os12t0244100-03
Chr12	irgsp1_rep	CDS	7989639	7989737	.	+	1	Parent=Os12t0244100-03
Chr12	irgsp1_rep	CDS	7989843	7990032	.	+	1	Parent=Os12t0244100-03
Chr12	irgsp1_rep	CDS	7990278	7990676	.	+	0	Parent=Os12t0244100-03
Chr12	irgsp1_rep	CDS	7991133	7991534	.	+	0	Parent=Os12t0244100-03
Chr12	irgsp1_rep	three_prime_UTR	7991535	7991824	.	+	.	Parent=Os12t0244100-03
Chr12	irgsp1_rep	mRNA	7989855	7991848	.	+	.	ID=Os12t0244100-04;Name=Os12t0244100-04;Locus_id=Os12g0244100;CGSNL Gene Symbol=HSP70CP2;CGSNL Gene Name=HEAT SHOCK PROTEIN 70KD CHLOROPLAST PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsHsp70CP2;Oryzabase Gene Name Synonym(s)=heat shock protein 70 chloroplast protein 2;Note=Similar to stromal 70 kDa heat shock-related protein.;Transcript_evidence=AK069937 (DDBJ%2C Best hit);ORF_evidence=D3YE92 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Heat shock protein Hsp70 (IPR001023),Heat shock protein 70 (IPR013126),Heat shock protein 70%2C conserved site (IPR018181);NIAS_FLcDNA=J023038F19;Oryzabase=13067;Expression=AK069937;TENOR=Os12t0244100-04;KEGG=Os12t0244100-04
Chr12	irgsp1_rep	five_prime_UTR	7989855	7989855	.	+	.	Parent=Os12t0244100-04
Chr12	irgsp1_rep	CDS	7989856	7990032	.	+	0	Parent=Os12t0244100-04
Chr12	irgsp1_rep	CDS	7990278	7990676	.	+	0	Parent=Os12t0244100-04
Chr12	irgsp1_rep	CDS	7991133	7991534	.	+	0	Parent=Os12t0244100-04
Chr12	irgsp1_rep	three_prime_UTR	7991535	7991848	.	+	.	Parent=Os12t0244100-04
Chr12	irgsp1_rep	mRNA	7989853	7990426	.	-	.	ID=Os12t0244150-00;Name=Os12t0244150-00;Locus_id=Os12g0244150;Note=Hypothetical protein.;Transcript_evidence=BT086887 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0244150-00
Chr12	irgsp1_rep	CDS	7990273	7990426	.	-	0	Parent=Os12t0244150-00
Chr12	irgsp1_rep	CDS	7989853	7990024	.	-	2	Parent=Os12t0244150-00
Chr12	irgsp1_rep	mRNA	7992997	7994722	.	-	.	ID=Os12t0244200-01;Name=Os12t0244200-01;Locus_id=Os12g0244200;Note=Ribosomal protein L37%2C mitochondrial domain containing protein.;Transcript_evidence=AK120721 (DDBJ%2C Best hit);ORF_evidence=A2ZJE3 (UniProt);InterPro=Ribosomal protein L37%2C mitochondrial (IPR013870);NIAS_FLcDNA=J023002G14;Expression=AK120721;TENOR=Os12t0244200-01;KEGG=Os12t0244200-01
Chr12	irgsp1_rep	five_prime_UTR	7994629	7994722	.	-	.	Parent=Os12t0244200-01
Chr12	irgsp1_rep	five_prime_UTR	7993533	7993552	.	-	.	Parent=Os12t0244200-01
Chr12	irgsp1_rep	CDS	7993140	7993532	.	-	0	Parent=Os12t0244200-01
Chr12	irgsp1_rep	three_prime_UTR	7992997	7993139	.	-	.	Parent=Os12t0244200-01
Chr12	irgsp1_rep	mRNA	7997383	8000365	.	+	.	ID=Os12t0244400-01;Name=Os12t0244400-01;Locus_id=Os12g0244400;Oryzabase Gene Symbol Synonym(s)=OsLHT2%2C LHT2;Oryzabase Gene Name Synonym(s)=lysine and histidine transporter 2%2C lysine-histidine-like transporter 2;Note=Similar to Lysine and histidine specific transporter.;Transcript_evidence=AK070297 (DDBJ%2C Best hit);ORF_evidence=NP_001149518.1 (RefSeq);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=J023052C04;Oryzabase=18504;Expression=AK070297;TENOR=Os12t0244400-01;KEGG=Os12t0244400-01
Chr12	irgsp1_rep	five_prime_UTR	7997383	7997473	.	+	.	Parent=Os12t0244400-01
Chr12	irgsp1_rep	CDS	7997474	7997649	.	+	0	Parent=Os12t0244400-01
Chr12	irgsp1_rep	CDS	7997733	7998637	.	+	1	Parent=Os12t0244400-01
Chr12	irgsp1_rep	CDS	7999515	7999606	.	+	2	Parent=Os12t0244400-01
Chr12	irgsp1_rep	CDS	7999733	7999801	.	+	0	Parent=Os12t0244400-01
Chr12	irgsp1_rep	CDS	7999931	8000029	.	+	0	Parent=Os12t0244400-01
Chr12	irgsp1_rep	three_prime_UTR	8000030	8000365	.	+	.	Parent=Os12t0244400-01
Chr12	irgsp1_rep	mRNA	8000498	8004474	.	-	.	ID=Os12t0244500-01;Name=Os12t0244500-01;Locus_id=Os12g0244500;Note=Conserved hypothetical protein.;Transcript_evidence=AK102026 (DDBJ%2C Best hit);ORF_evidence=A3CG97 (UniProt);NIAS_FLcDNA=J033080M18;Expression=AK102026;TENOR=Os12t0244500-01;KEGG=Os12t0244500-01
Chr12	irgsp1_rep	five_prime_UTR	8004370	8004474	.	-	.	Parent=Os12t0244500-01
Chr12	irgsp1_rep	five_prime_UTR	8004157	8004179	.	-	.	Parent=Os12t0244500-01
Chr12	irgsp1_rep	CDS	8004054	8004156	.	-	0	Parent=Os12t0244500-01
Chr12	irgsp1_rep	CDS	8003161	8003210	.	-	2	Parent=Os12t0244500-01
Chr12	irgsp1_rep	CDS	8001142	8001278	.	-	0	Parent=Os12t0244500-01
Chr12	irgsp1_rep	CDS	8000844	8001057	.	-	1	Parent=Os12t0244500-01
Chr12	irgsp1_rep	three_prime_UTR	8000498	8000843	.	-	.	Parent=Os12t0244500-01
Chr12	irgsp1_rep	mRNA	8015779	8019944	.	+	.	ID=Os12t0244800-01;Name=Os12t0244800-01;Locus_id=Os12g0244800;Note=Conserved hypothetical protein.;Transcript_evidence=AK101891 (DDBJ%2C Best hit);ORF_evidence=Q8LIA9 (UniProt);NIAS_FLcDNA=J033070O08;Expression=AK101891;TENOR=Os12t0244800-01;KEGG=Os12t0244800-01
Chr12	irgsp1_rep	five_prime_UTR	8015779	8015981	.	+	.	Parent=Os12t0244800-01
Chr12	irgsp1_rep	CDS	8015982	8016353	.	+	0	Parent=Os12t0244800-01
Chr12	irgsp1_rep	three_prime_UTR	8016354	8019944	.	+	.	Parent=Os12t0244800-01
Chr12	irgsp1_rep	mRNA	8023705	8024741	.	-	.	ID=Os12t0244901-01;Name=Os12t0244901-01;Locus_id=Os12g0244901;Note=Conserved hypothetical protein.;Transcript_evidence=AK241406 (DDBJ%2C Best hit);ORF_evidence=NP_001176869.1 (RefSeq);NIAS_FLcDNA=J065159E08;TENOR=Os12t0244901-01;KEGG=Os12t0244901-01
Chr12	irgsp1_rep	five_prime_UTR	8024486	8024741	.	-	.	Parent=Os12t0244901-01
Chr12	irgsp1_rep	CDS	8024192	8024485	.	-	0	Parent=Os12t0244901-01
Chr12	irgsp1_rep	three_prime_UTR	8023705	8024191	.	-	.	Parent=Os12t0244901-01
Chr12	irgsp1_rep	mRNA	8025163	8027395	.	+	.	ID=Os12t0245000-01;Name=Os12t0245000-01;Locus_id=Os12g0245000;Note=Conserved hypothetical protein.;Transcript_evidence=AK099682 (DDBJ%2C Best hit);ORF_evidence=B9GDV3 (UniProt);NIAS_FLcDNA=J013071H20;TENOR=Os12t0245000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	8025163	8026051	.	+	.	Parent=Os12t0245000-01
Chr12	irgsp1_rep	CDS	8026052	8027197	.	+	0	Parent=Os12t0245000-01
Chr12	irgsp1_rep	three_prime_UTR	8027198	8027395	.	+	.	Parent=Os12t0245000-01
Chr12	irgsp1_rep	mRNA	8026505	8027363	.	+	.	ID=Os12t0245000-02;Name=Os12t0245000-02;Locus_id=Os12g0245000;Note=Hypothetical conserved gene.;Transcript_evidence=AK108456 (DDBJ%2C Best hit);ORF_evidence=B9GDV3 (UniProt);NIAS_FLcDNA=002-143-D03;Expression=AK108456;TENOR=Os12t0245000-02;KEGG=Os12t0245000-02
Chr12	irgsp1_rep	CDS	8026505	8027197	.	+	0	Parent=Os12t0245000-02
Chr12	irgsp1_rep	three_prime_UTR	8027198	8027363	.	+	.	Parent=Os12t0245000-02
Chr12	irgsp1_rep	mRNA	8031420	8036687	.	+	.	ID=Os12t0245100-01;Name=Os12t0245100-01;Locus_id=Os12g0245100;Oryzabase Gene Symbol Synonym(s)=OsKIX_11;Oryzabase Gene Name Synonym(s)=KIX domain protein 11;Note=Conserved hypothetical protein.;Transcript_evidence=AK065859 (DDBJ%2C Best hit);ORF_evidence=B8BP26 (UniProt);NIAS_FLcDNA=J013043N06;Oryzabase=13465;Expression=AK065859;TENOR=Os12t0245100-01;KEGG=Os12t0245100-01
Chr12	irgsp1_rep	five_prime_UTR	8031420	8031566	.	+	.	Parent=Os12t0245100-01
Chr12	irgsp1_rep	CDS	8031567	8031640	.	+	0	Parent=Os12t0245100-01
Chr12	irgsp1_rep	CDS	8035048	8036407	.	+	1	Parent=Os12t0245100-01
Chr12	irgsp1_rep	three_prime_UTR	8036408	8036687	.	+	.	Parent=Os12t0245100-01
Chr12	irgsp1_rep	mRNA	8053870	8055730	.	+	.	ID=Os12t0245401-01;Name=Os12t0245401-01;Locus_id=Os12g0245401;Note=Non-protein coding transcript.;Transcript_evidence=AK288447 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090034N03;TENOR=Os12t0245401-01
Chr12	irgsp1_rep	exon	8053870	8055730	.	+	.	Parent=Os12t0245401-01
Chr12	irgsp1_rep	mRNA	8076291	8076808	.	+	.	ID=Os12t0245700-01;Name=Os12t0245700-01;Locus_id=Os12g0245700;Note=Hypothetical conserved gene.;Transcript_evidence=AK107691 (DDBJ%2C Best hit);ORF_evidence=A2ZJF0 (UniProt);NIAS_FLcDNA=002-132-B12;Expression=AK107691;TENOR=Os12t0245700-01;KEGG=Os12t0245700-01
Chr12	irgsp1_rep	five_prime_UTR	8076291	8076369	.	+	.	Parent=Os12t0245700-01
Chr12	irgsp1_rep	CDS	8076370	8076603	.	+	0	Parent=Os12t0245700-01
Chr12	irgsp1_rep	three_prime_UTR	8076604	8076808	.	+	.	Parent=Os12t0245700-01
Chr12	irgsp1_rep	mRNA	8078681	8081249	.	+	.	ID=Os12t0245800-01;Name=Os12t0245800-01;Locus_id=Os12g0245800;Note=Conserved hypothetical protein.;Transcript_evidence=AK241757 (DDBJ%2C Best hit);ORF_evidence=NP_001176870.1 (RefSeq);NIAS_FLcDNA=J065204E20;TENOR=Os12t0245800-01;KEGG=Os12t0245800-01
Chr12	irgsp1_rep	five_prime_UTR	8078681	8078793	.	+	.	Parent=Os12t0245800-01
Chr12	irgsp1_rep	CDS	8078794	8078955	.	+	0	Parent=Os12t0245800-01
Chr12	irgsp1_rep	three_prime_UTR	8078956	8078956	.	+	.	Parent=Os12t0245800-01
Chr12	irgsp1_rep	three_prime_UTR	8079578	8080169	.	+	.	Parent=Os12t0245800-01
Chr12	irgsp1_rep	three_prime_UTR	8080985	8081249	.	+	.	Parent=Os12t0245800-01
Chr12	irgsp1_rep	mRNA	8161472	8165176	.	+	.	ID=Os12t0246700-01;Name=Os12t0246700-01;Locus_id=Os12g0246700;Note=NB-ARC domain containing protein.;Transcript_evidence=AK101980 (DDBJ%2C Best hit),AK101415 (DDBJ%2C Best hit);ORF_evidence=Q01MK5 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J033077I04,J033037L18;Expression=AK101980;TENOR=Os12t0246700-01;KEGG=Os12t0246700-01
Chr12	irgsp1_rep	five_prime_UTR	8161472	8161659	.	+	.	Parent=Os12t0246700-01
Chr12	irgsp1_rep	five_prime_UTR	8162056	8162098	.	+	.	Parent=Os12t0246700-01
Chr12	irgsp1_rep	CDS	8162099	8164895	.	+	0	Parent=Os12t0246700-01
Chr12	irgsp1_rep	CDS	8164982	8165001	.	+	2	Parent=Os12t0246700-01
Chr12	irgsp1_rep	three_prime_UTR	8165002	8165176	.	+	.	Parent=Os12t0246700-01
Chr12	irgsp1_rep	mRNA	8239432	8241147	.	+	.	ID=Os12t0247700-01;Name=Os12t0247700-01;Locus_id=Os12g0247700;RAP-DB Gene Symbol Synonym(s)=OsJAC1;RAP-DB Gene Name Synonym(s)=jacalin-related lectin 1;Oryzabase Gene Symbol Synonym(s)=OsJAC1%2C JAC1;Oryzabase Gene Name Synonym(s)=jacalin-related lectin 1;Note=Mannose-binding jacalin-related lectin%2C Response to DNA damage from ionizing radiation%2C Resistant against fungal pathogens;Transcript_evidence=AK066682;ORF_evidence=Q306J3;GO=Molecular Function: carbohydrate binding (GO:0030246);InterPro=Jacalin-like lectin domain superfamily (IPR036404),Dirigent protein (IPR004265),Jacalin-like lectin domain (IPR001229),Jacalin-like lectin domain%2C plant (IPR033734);NIAS_FLcDNA=J013068M17;Manual Curation=January 20%2C 2020;Literature_PMID=31852472,28737678;Oryzabase=15754;Expression=AK066682;TENOR=Os12t0247700-01;KEGG=Os12t0247700-01
Chr12	irgsp1_rep	five_prime_UTR	8239432	8239503	.	+	.	Parent=Os12t0247700-01
Chr12	irgsp1_rep	CDS	8239504	8239793	.	+	0	Parent=Os12t0247700-01
Chr12	irgsp1_rep	CDS	8240098	8240287	.	+	1	Parent=Os12t0247700-01
Chr12	irgsp1_rep	CDS	8240389	8240589	.	+	0	Parent=Os12t0247700-01
Chr12	irgsp1_rep	CDS	8240698	8240937	.	+	0	Parent=Os12t0247700-01
Chr12	irgsp1_rep	three_prime_UTR	8240938	8241147	.	+	.	Parent=Os12t0247700-01
Chr12	irgsp1_rep	mRNA	8239522	8240926	.	-	.	ID=Os12t0247900-00;Name=Os12t0247900-00;Locus_id=Os12g0247900;Note=Hypothetical protein.;Transcript_evidence=BT016217 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0247900-00
Chr12	irgsp1_rep	five_prime_UTR	8240904	8240926	.	-	.	Parent=Os12t0247900-00
Chr12	irgsp1_rep	CDS	8240673	8240903	.	-	0	Parent=Os12t0247900-00
Chr12	irgsp1_rep	CDS	8240516	8240569	.	-	0	Parent=Os12t0247900-00
Chr12	irgsp1_rep	three_prime_UTR	8240374	8240515	.	-	.	Parent=Os12t0247900-00
Chr12	irgsp1_rep	three_prime_UTR	8240100	8240271	.	-	.	Parent=Os12t0247900-00
Chr12	irgsp1_rep	three_prime_UTR	8239522	8239794	.	-	.	Parent=Os12t0247900-00
Chr12	irgsp1_rep	mRNA	8301415	8301993	.	+	.	ID=Os12t0248600-01;Name=Os12t0248600-01;Locus_id=Os12g0248600;Note=Hypothetical protein.;Transcript_evidence=AK062531 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-104-E04;Expression=AK062531;TENOR=Os12t0248600-01;KEGG=Os12t0248600-01
Chr12	irgsp1_rep	five_prime_UTR	8301415	8301485	.	+	.	Parent=Os12t0248600-01
Chr12	irgsp1_rep	CDS	8301486	8301827	.	+	0	Parent=Os12t0248600-01
Chr12	irgsp1_rep	three_prime_UTR	8301828	8301993	.	+	.	Parent=Os12t0248600-01
Chr12	irgsp1_rep	mRNA	8306939	8307207	.	+	.	ID=Os12t0248800-00;Name=Os12t0248800-00;Locus_id=Os12g0248800;Note=Non-protein coding transcript.;Transcript_evidence=AK362785 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0248800-00
Chr12	irgsp1_rep	exon	8306939	8307207	.	+	.	Parent=Os12t0248800-00
Chr12	irgsp1_rep	mRNA	8327011	8329430	.	+	.	ID=Os12t0249100-00;Name=Os12t0249100-00;Locus_id=Os12g0249100;CGSNL Gene Symbol=TET15;CGSNL Gene Name=TETRASPANIN 15;Oryzabase Gene Symbol Synonym(s)=OsTET15;Oryzabase Gene Name Synonym(s)=tetraspanin 15;Note=Tetraspanin domain containing protein.;Transcript_evidence=AK364784 (DDBJ);ORF_evidence=Q2QUZ4 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Tetraspanin (IPR018499);Oryzabase=20319;TENOR=Os12t0249100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	8327011	8327368	.	+	0	Parent=Os12t0249100-00
Chr12	irgsp1_rep	CDS	8327933	8328374	.	+	2	Parent=Os12t0249100-00
Chr12	irgsp1_rep	CDS	8329189	8329201	.	+	1	Parent=Os12t0249100-00
Chr12	irgsp1_rep	three_prime_UTR	8329202	8329430	.	+	.	Parent=Os12t0249100-00
Chr12	irgsp1_rep	mRNA	8407899	8417651	.	-	.	ID=Os12t0249900-01;Name=Os12t0249900-01;Locus_id=Os12g0249900;CGSNL Gene Symbol=RLCK366;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 366;Oryzabase Gene Symbol Synonym(s)=OsRLCK366;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 366;Note=Protein kinase%2C core domain containing protein.;Transcript_evidence=AK102027 (DDBJ%2C Best hit);ORF_evidence=Q2QUZ1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033080N03;Oryzabase=19036;Expression=AK102027;TENOR=Os12t0249900-01;KEGG=Os12t0249900-01
Chr12	irgsp1_rep	five_prime_UTR	8417445	8417651	.	-	.	Parent=Os12t0249900-01
Chr12	irgsp1_rep	CDS	8416473	8417294	.	-	0	Parent=Os12t0249900-01
Chr12	irgsp1_rep	CDS	8416207	8416256	.	-	0	Parent=Os12t0249900-01
Chr12	irgsp1_rep	CDS	8415283	8415324	.	-	1	Parent=Os12t0249900-01
Chr12	irgsp1_rep	CDS	8414411	8414454	.	-	1	Parent=Os12t0249900-01
Chr12	irgsp1_rep	CDS	8411297	8411412	.	-	2	Parent=Os12t0249900-01
Chr12	irgsp1_rep	CDS	8409776	8410053	.	-	0	Parent=Os12t0249900-01
Chr12	irgsp1_rep	CDS	8409442	8409660	.	-	1	Parent=Os12t0249900-01
Chr12	irgsp1_rep	CDS	8409196	8409340	.	-	1	Parent=Os12t0249900-01
Chr12	irgsp1_rep	CDS	8408165	8408413	.	-	0	Parent=Os12t0249900-01
Chr12	irgsp1_rep	three_prime_UTR	8407899	8408164	.	-	.	Parent=Os12t0249900-01
Chr12	irgsp1_rep	mRNA	8485823	8487087	.	-	.	ID=Os12t0250700-01;Name=Os12t0250700-01;Locus_id=Os12g0250700;Note=Conserved hypothetical protein.;Transcript_evidence=AK069277 (DDBJ%2C Best hit);ORF_evidence=NP_001046731.1 (RefSeq);NIAS_FLcDNA=J023018N13;TENOR=Os12t0250700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	8486568	8487087	.	-	.	Parent=Os12t0250700-01
Chr12	irgsp1_rep	five_prime_UTR	8486311	8486442	.	-	.	Parent=Os12t0250700-01
Chr12	irgsp1_rep	CDS	8486122	8486310	.	-	0	Parent=Os12t0250700-01
Chr12	irgsp1_rep	three_prime_UTR	8485823	8486121	.	-	.	Parent=Os12t0250700-01
Chr12	irgsp1_rep	mRNA	8496419	8497978	.	-	.	ID=Os12t0250900-01;Name=Os12t0250900-01;Locus_id=Os12g0250900;Note=BRCT domain containing protein.;Transcript_evidence=AK119963 (DDBJ%2C Best hit);ORF_evidence=B6U6I5 (UniProt);GO=Cellular Component: intracellular (GO:0005622);InterPro=BRCT (IPR001357);NIAS_FLcDNA=002-184-D06;Expression=AK119963;TENOR=Os12t0250900-01;KEGG=Os12t0250900-01
Chr12	irgsp1_rep	five_prime_UTR	8497834	8497978	.	-	.	Parent=Os12t0250900-01
Chr12	irgsp1_rep	CDS	8497397	8497833	.	-	0	Parent=Os12t0250900-01
Chr12	irgsp1_rep	CDS	8496659	8496899	.	-	1	Parent=Os12t0250900-01
Chr12	irgsp1_rep	three_prime_UTR	8496419	8496658	.	-	.	Parent=Os12t0250900-01
Chr12	irgsp1_rep	mRNA	8658688	8661339	.	+	.	ID=Os12t0254201-01;Name=Os12t0254201-01;Locus_id=Os12g0254201;Note=Hypothetical conserved gene.;Transcript_evidence=AK288357 (DDBJ%2C Best hit);ORF_evidence=A2X4Q3 (UniProt);NIAS_FLcDNA=J090024J17;TENOR=Os12t0254201-01;KEGG=Os12t0254201-01
Chr12	irgsp1_rep	five_prime_UTR	8658688	8660274	.	+	.	Parent=Os12t0254201-01
Chr12	irgsp1_rep	CDS	8660275	8660517	.	+	0	Parent=Os12t0254201-01
Chr12	irgsp1_rep	three_prime_UTR	8660518	8661339	.	+	.	Parent=Os12t0254201-01
Chr12	irgsp1_rep	mRNA	8670057	8679483	.	-	.	ID=Os12t0254400-01;Name=Os12t0254400-01;Locus_id=Os12g0254400;Note=Hypothetical protein.;Transcript_evidence=AK073343 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J033029I04;TENOR=Os12t0254400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	8679483	8679483	.	-	.	Parent=Os12t0254400-01
Chr12	irgsp1_rep	CDS	8679207	8679482	.	-	0	Parent=Os12t0254400-01
Chr12	irgsp1_rep	three_prime_UTR	8679145	8679206	.	-	.	Parent=Os12t0254400-01
Chr12	irgsp1_rep	three_prime_UTR	8672271	8672665	.	-	.	Parent=Os12t0254400-01
Chr12	irgsp1_rep	three_prime_UTR	8671982	8672092	.	-	.	Parent=Os12t0254400-01
Chr12	irgsp1_rep	three_prime_UTR	8671785	8671878	.	-	.	Parent=Os12t0254400-01
Chr12	irgsp1_rep	three_prime_UTR	8671448	8671537	.	-	.	Parent=Os12t0254400-01
Chr12	irgsp1_rep	three_prime_UTR	8670057	8670420	.	-	.	Parent=Os12t0254400-01
Chr12	irgsp1_rep	mRNA	8673218	8674964	.	-	.	ID=Os12t0254601-01;Name=Os12t0254601-01;Locus_id=Os12g0254601;Note=Hypothetical gene.;Transcript_evidence=AK072652 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023127E06;Expression=AK072652;TENOR=Os12t0254601-01;KEGG=Os12t0254601-01
Chr12	irgsp1_rep	five_prime_UTR	8673732	8674964	.	-	.	Parent=Os12t0254601-01
Chr12	irgsp1_rep	CDS	8673513	8673731	.	-	0	Parent=Os12t0254601-01
Chr12	irgsp1_rep	three_prime_UTR	8673218	8673512	.	-	.	Parent=Os12t0254601-01
Chr12	irgsp1_rep	mRNA	8684238	8689117	.	-	.	ID=Os12t0254700-01;Name=Os12t0254700-01;Locus_id=Os12g0254700;Note=Similar to H-ATPase.;Transcript_evidence=AK242873 (DDBJ%2C Best hit);ORF_evidence=Q8L6I3 (UniProt);NIAS_FLcDNA=J090077A14;TENOR=Os12t0254700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	8687980	8689117	.	-	.	Parent=Os12t0254700-01
Chr12	irgsp1_rep	CDS	8687695	8687979	.	-	0	Parent=Os12t0254700-01
Chr12	irgsp1_rep	three_prime_UTR	8684238	8687694	.	-	.	Parent=Os12t0254700-01
Chr12	irgsp1_rep	mRNA	8690833	8699141	.	+	.	ID=Os12t0254825-00;Name=Os12t0254825-00;Locus_id=Os12g0254825;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9GCL7 (UniProt);TENOR=Os12t0254825-00
Chr12	irgsp1_rep	CDS	8690833	8691210	.	+	0	Parent=Os12t0254825-00
Chr12	irgsp1_rep	CDS	8698995	8699141	.	+	0	Parent=Os12t0254825-00
Chr12	irgsp1_rep	mRNA	8710740	8711646	.	+	.	ID=Os12t0255000-01;Name=Os12t0255000-01;Locus_id=Os12g0255000;Note=Hypothetical gene.;Transcript_evidence=AK119990 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-184-G05;TENOR=Os12t0255000-01
Chr12	irgsp1_rep	five_prime_UTR	8710740	8710962	.	+	.	Parent=Os12t0255000-01
Chr12	irgsp1_rep	CDS	8710963	8710996	.	+	0	Parent=Os12t0255000-01
Chr12	irgsp1_rep	CDS	8711353	8711646	.	+	2	Parent=Os12t0255000-01
Chr12	irgsp1_rep	mRNA	8726067	8737949	.	-	.	ID=Os12t0255200-01;Name=Os12t0255200-01;Locus_id=Os12g0255200;Note=Staphylococcal nuclease (SNase-like)%2C OB-fold domain containing protein.;Transcript_evidence=AK068445 (DDBJ%2C Best hit);ORF_evidence=B8BNU8 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Staphylococcal nuclease (SNase-like) (IPR006021),Staphylococcal nuclease (SNase-like)%2C OB-fold (IPR016071);NIAS_FLcDNA=J013152P05;Expression=AK068445;TENOR=Os12t0255200-01;KEGG=Os12t0255200-01
Chr12	irgsp1_rep	five_prime_UTR	8737805	8737949	.	-	.	Parent=Os12t0255200-01
Chr12	irgsp1_rep	CDS	8737409	8737804	.	-	0	Parent=Os12t0255200-01
Chr12	irgsp1_rep	CDS	8734311	8734366	.	-	0	Parent=Os12t0255200-01
Chr12	irgsp1_rep	CDS	8732578	8732743	.	-	1	Parent=Os12t0255200-01
Chr12	irgsp1_rep	CDS	8731648	8731703	.	-	0	Parent=Os12t0255200-01
Chr12	irgsp1_rep	CDS	8730976	8731090	.	-	1	Parent=Os12t0255200-01
Chr12	irgsp1_rep	CDS	8729315	8729425	.	-	0	Parent=Os12t0255200-01
Chr12	irgsp1_rep	CDS	8729063	8729241	.	-	0	Parent=Os12t0255200-01
Chr12	irgsp1_rep	CDS	8727888	8727944	.	-	1	Parent=Os12t0255200-01
Chr12	irgsp1_rep	CDS	8727648	8727807	.	-	1	Parent=Os12t0255200-01
Chr12	irgsp1_rep	CDS	8727474	8727542	.	-	0	Parent=Os12t0255200-01
Chr12	irgsp1_rep	CDS	8726237	8726359	.	-	0	Parent=Os12t0255200-01
Chr12	irgsp1_rep	three_prime_UTR	8726067	8726236	.	-	.	Parent=Os12t0255200-01
Chr12	irgsp1_rep	mRNA	8726013	8730968	.	-	.	ID=Os12t0255200-02;Name=Os12t0255200-02;Locus_id=Os12g0255200;Note=Conserved hypothetical protein.;Transcript_evidence=AK065967 (DDBJ%2C Best hit);ORF_evidence=B9GBG8 (UniProt);NIAS_FLcDNA=J013049E01;TENOR=Os12t0255200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	8729546	8730968	.	-	.	Parent=Os12t0255200-02
Chr12	irgsp1_rep	CDS	8729282	8729545	.	-	0	Parent=Os12t0255200-02
Chr12	irgsp1_rep	three_prime_UTR	8729063	8729281	.	-	.	Parent=Os12t0255200-02
Chr12	irgsp1_rep	three_prime_UTR	8727888	8727944	.	-	.	Parent=Os12t0255200-02
Chr12	irgsp1_rep	three_prime_UTR	8727648	8727807	.	-	.	Parent=Os12t0255200-02
Chr12	irgsp1_rep	three_prime_UTR	8727474	8727542	.	-	.	Parent=Os12t0255200-02
Chr12	irgsp1_rep	three_prime_UTR	8726013	8726359	.	-	.	Parent=Os12t0255200-02
Chr12	irgsp1_rep	mRNA	8767244	8767924	.	+	.	ID=Os12t0255701-00;Name=Os12t0255701-00;Locus_id=Os12g0255701;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001176876.1 (RefSeq);TENOR=Os12t0255701-00;KEGG=Os12t0255701-00
Chr12	irgsp1_rep	CDS	8767244	8767924	.	+	0	Parent=Os12t0255701-00
Chr12	irgsp1_rep	mRNA	8784618	8788698	.	-	.	ID=Os12t0255850-01;Name=Os12t0255850-01;Locus_id=Os12g0255850;Note=Conserved hypothetical protein.;Transcript_evidence=AK242063 (DDBJ%2C Best hit);ORF_evidence=NP_001176877.1 (RefSeq);NIAS_FLcDNA=J075127N18;TENOR=Os12t0255850-01
Chr12	irgsp1_rep	five_prime_UTR	8788527	8788698	.	-	.	Parent=Os12t0255850-01
Chr12	irgsp1_rep	CDS	8788235	8788526	.	-	0	Parent=Os12t0255850-01
Chr12	irgsp1_rep	CDS	8788081	8788145	.	-	2	Parent=Os12t0255850-01
Chr12	irgsp1_rep	three_prime_UTR	8788046	8788080	.	-	.	Parent=Os12t0255850-01
Chr12	irgsp1_rep	three_prime_UTR	8786143	8786199	.	-	.	Parent=Os12t0255850-01
Chr12	irgsp1_rep	three_prime_UTR	8784618	8784802	.	-	.	Parent=Os12t0255850-01
Chr12	irgsp1_rep	mRNA	8792353	8797234	.	+	.	ID=Os12t0256000-01;Name=Os12t0256000-01;Locus_id=Os12g0256000;Note=Alpha/beta hydrolase fold-3 domain containing protein.;Transcript_evidence=AK100022 (DDBJ%2C Best hit);ORF_evidence=NP_568298.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787);InterPro=Alpha/beta hydrolase fold-3 (IPR013094);NIAS_FLcDNA=J013145I21;Expression=AK100022;TENOR=Os12t0256000-01;KEGG=Os12t0256000-01
Chr12	irgsp1_rep	five_prime_UTR	8792353	8792456	.	+	.	Parent=Os12t0256000-01
Chr12	irgsp1_rep	CDS	8792457	8793244	.	+	0	Parent=Os12t0256000-01
Chr12	irgsp1_rep	CDS	8796163	8796700	.	+	1	Parent=Os12t0256000-01
Chr12	irgsp1_rep	three_prime_UTR	8796701	8797234	.	+	.	Parent=Os12t0256000-01
Chr12	irgsp1_rep	mRNA	8801606	8807739	.	+	.	ID=Os12t0256300-01;Name=Os12t0256300-01;Locus_id=Os12g0256300;Note=Similar to Schizosaccharomyces pombe (Fragment).;Transcript_evidence=AK073908 (DDBJ%2C Best hit),AK099579 (DDBJ%2C Best hit);ORF_evidence=Q53Q54 (UniProt);GO=Biological Process: RNA metabolic process (GO:0016070),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=MIF4G-like%2C type 3 (IPR003890),Initiation factor eIF-4 gamma%2C MA3 (IPR003891),MIF4-like%2C type 1/2/3 (IPR016021),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033075C23,J013039D24;TENOR=Os12t0256300-01
Chr12	irgsp1_rep	five_prime_UTR	8801606	8801644	.	+	.	Parent=Os12t0256300-01
Chr12	irgsp1_rep	CDS	8801645	8802673	.	+	0	Parent=Os12t0256300-01
Chr12	irgsp1_rep	CDS	8802916	8803038	.	+	0	Parent=Os12t0256300-01
Chr12	irgsp1_rep	CDS	8803127	8803193	.	+	0	Parent=Os12t0256300-01
Chr12	irgsp1_rep	CDS	8803594	8803697	.	+	2	Parent=Os12t0256300-01
Chr12	irgsp1_rep	CDS	8803781	8803883	.	+	0	Parent=Os12t0256300-01
Chr12	irgsp1_rep	CDS	8804086	8804384	.	+	2	Parent=Os12t0256300-01
Chr12	irgsp1_rep	CDS	8806454	8806759	.	+	0	Parent=Os12t0256300-01
Chr12	irgsp1_rep	CDS	8806849	8807181	.	+	0	Parent=Os12t0256300-01
Chr12	irgsp1_rep	three_prime_UTR	8807182	8807739	.	+	.	Parent=Os12t0256300-01
Chr12	irgsp1_rep	mRNA	8804567	8806151	.	+	.	ID=Os12t0256400-01;Name=Os12t0256400-01;Locus_id=Os12g0256400;Note=Conserved hypothetical protein.;Transcript_evidence=AK109704 (DDBJ%2C Best hit);ORF_evidence=B9GCM0 (UniProt);NIAS_FLcDNA=002-145-G01;TENOR=Os12t0256400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	8804567	8804991	.	+	.	Parent=Os12t0256400-01
Chr12	irgsp1_rep	CDS	8804992	8805828	.	+	0	Parent=Os12t0256400-01
Chr12	irgsp1_rep	three_prime_UTR	8805829	8806151	.	+	.	Parent=Os12t0256400-01
Chr12	irgsp1_rep	mRNA	8809699	8811919	.	-	.	ID=Os12t0256600-01;Name=Os12t0256600-01;Locus_id=Os12g0256600;Note=Conserved hypothetical protein.;Transcript_evidence=AK064516 (DDBJ%2C Best hit);ORF_evidence=Q7XDR1 (UniProt);NIAS_FLcDNA=002-111-F06;TENOR=Os12t0256600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	8811033	8811919	.	-	.	Parent=Os12t0256600-01
Chr12	irgsp1_rep	five_prime_UTR	8810002	8810252	.	-	.	Parent=Os12t0256600-01
Chr12	irgsp1_rep	CDS	8809783	8810001	.	-	0	Parent=Os12t0256600-01
Chr12	irgsp1_rep	three_prime_UTR	8809699	8809782	.	-	.	Parent=Os12t0256600-01
Chr12	irgsp1_rep	mRNA	8820379	8823178	.	+	.	ID=Os12t0256800-00;Name=Os12t0256800-00;Locus_id=Os12g0256800;Note=Aminotransferase-like%2C plant mobile domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QUQ6 (UniProt);InterPro=Aminotransferase-like%2C plant mobile domain (IPR019557);TENOR=Os12t0256800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	8820379	8822335	.	+	0	Parent=Os12t0256800-00
Chr12	irgsp1_rep	CDS	8822448	8822683	.	+	2	Parent=Os12t0256800-00
Chr12	irgsp1_rep	CDS	8823152	8823178	.	+	0	Parent=Os12t0256800-00
Chr12	irgsp1_rep	mRNA	8823315	8825166	.	-	.	ID=Os12t0256900-01;Name=Os12t0256900-01;Locus_id=Os12g0256900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK064488 (DDBJ%2C Best hit);ORF_evidence=Q2QUQ5 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-111-B11;Expression=AK064488;TENOR=Os12t0256900-01;KEGG=Os12t0256900-01
Chr12	irgsp1_rep	five_prime_UTR	8825164	8825166	.	-	.	Parent=Os12t0256900-01
Chr12	irgsp1_rep	CDS	8824765	8825163	.	-	0	Parent=Os12t0256900-01
Chr12	irgsp1_rep	three_prime_UTR	8823315	8824764	.	-	.	Parent=Os12t0256900-01
Chr12	irgsp1_rep	mRNA	8829684	8834559	.	-	.	ID=Os12t0257000-01;Name=Os12t0257000-01;Locus_id=Os12g0257000;CGSNL Gene Symbol=CPD1;CGSNL Gene Name=TYPE I CARBOXYPEPTIDASE;Oryzabase Gene Symbol Synonym(s)=cbp1%2C R-CPD1%2C CBP I%2C CBP1%2C OsSCP65%2C SCP65;Oryzabase Gene Name Synonym(s)=type I carboxypeptidase%2C type I CPD%2C serine carboxypeptidase I%2C Serine carboxypeptidase 65;Note=Serine carboxypeptidase I precursor (EC 3.4.16.5) (Carboxypeptidase C).;Transcript_evidence=AK064874 (DDBJ%2C Best hit);ORF_evidence=P37890 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=J013000J10;Oryzabase=13757;Expression=AK064874;TENOR=Os12t0257000-01;KEGG=Os12t0257000-01 (EC:3.4.16.5)
Chr12	irgsp1_rep	five_prime_UTR	8834517	8834559	.	-	.	Parent=Os12t0257000-01
Chr12	irgsp1_rep	CDS	8834338	8834516	.	-	0	Parent=Os12t0257000-01
Chr12	irgsp1_rep	CDS	8834078	8834223	.	-	1	Parent=Os12t0257000-01
Chr12	irgsp1_rep	CDS	8832901	8832977	.	-	2	Parent=Os12t0257000-01
Chr12	irgsp1_rep	CDS	8832677	8832799	.	-	0	Parent=Os12t0257000-01
Chr12	irgsp1_rep	CDS	8832480	8832582	.	-	0	Parent=Os12t0257000-01
Chr12	irgsp1_rep	CDS	8832356	8832393	.	-	2	Parent=Os12t0257000-01
Chr12	irgsp1_rep	CDS	8832176	8832277	.	-	0	Parent=Os12t0257000-01
Chr12	irgsp1_rep	CDS	8831842	8831922	.	-	0	Parent=Os12t0257000-01
Chr12	irgsp1_rep	CDS	8831503	8831754	.	-	0	Parent=Os12t0257000-01
Chr12	irgsp1_rep	CDS	8830996	8831061	.	-	0	Parent=Os12t0257000-01
Chr12	irgsp1_rep	CDS	8830781	8830902	.	-	0	Parent=Os12t0257000-01
Chr12	irgsp1_rep	CDS	8830433	8830546	.	-	1	Parent=Os12t0257000-01
Chr12	irgsp1_rep	CDS	8830187	8830232	.	-	1	Parent=Os12t0257000-01
Chr12	irgsp1_rep	CDS	8829904	8829987	.	-	0	Parent=Os12t0257000-01
Chr12	irgsp1_rep	three_prime_UTR	8829684	8829903	.	-	.	Parent=Os12t0257000-01
Chr12	irgsp1_rep	mRNA	8829622	8832771	.	-	.	ID=Os12t0257000-02;Name=Os12t0257000-02;Locus_id=Os12g0257000;CGSNL Gene Symbol=CPD1;CGSNL Gene Name=TYPE I CARBOXYPEPTIDASE;Oryzabase Gene Symbol Synonym(s)=cbp1%2C R-CPD1%2C CBP I%2C CBP1%2C OsSCP65%2C SCP65;Oryzabase Gene Name Synonym(s)=type I carboxypeptidase%2C type I CPD%2C serine carboxypeptidase I%2C Serine carboxypeptidase 65;Note=Similar to Serine carboxypeptidase 1.;Transcript_evidence=AK072798 (DDBJ%2C Best hit);ORF_evidence=P37890 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=J023140F24;Oryzabase=13757;Expression=AK072798;TENOR=Os12t0257000-02;KEGG=Os12t0257000-02 (EC:3.4.16.5)
Chr12	irgsp1_rep	five_prime_UTR	8832770	8832771	.	-	.	Parent=Os12t0257000-02
Chr12	irgsp1_rep	CDS	8832677	8832769	.	-	0	Parent=Os12t0257000-02
Chr12	irgsp1_rep	CDS	8832480	8832582	.	-	0	Parent=Os12t0257000-02
Chr12	irgsp1_rep	CDS	8832356	8832393	.	-	2	Parent=Os12t0257000-02
Chr12	irgsp1_rep	CDS	8832176	8832277	.	-	0	Parent=Os12t0257000-02
Chr12	irgsp1_rep	CDS	8831842	8831922	.	-	0	Parent=Os12t0257000-02
Chr12	irgsp1_rep	CDS	8831503	8831754	.	-	0	Parent=Os12t0257000-02
Chr12	irgsp1_rep	CDS	8830996	8831061	.	-	0	Parent=Os12t0257000-02
Chr12	irgsp1_rep	CDS	8830781	8830902	.	-	0	Parent=Os12t0257000-02
Chr12	irgsp1_rep	CDS	8830433	8830546	.	-	1	Parent=Os12t0257000-02
Chr12	irgsp1_rep	CDS	8830187	8830232	.	-	1	Parent=Os12t0257000-02
Chr12	irgsp1_rep	CDS	8829904	8829987	.	-	0	Parent=Os12t0257000-02
Chr12	irgsp1_rep	three_prime_UTR	8829622	8829903	.	-	.	Parent=Os12t0257000-02
Chr12	irgsp1_rep	mRNA	8829575	8830551	.	-	.	ID=Os12t0257000-03;Name=Os12t0257000-03;Locus_id=Os12g0257000;CGSNL Gene Symbol=CPD1;CGSNL Gene Name=TYPE I CARBOXYPEPTIDASE;Oryzabase Gene Symbol Synonym(s)=cbp1%2C R-CPD1%2C CBP I%2C CBP1%2C OsSCP65%2C SCP65;Oryzabase Gene Name Synonym(s)=type I carboxypeptidase%2C type I CPD%2C serine carboxypeptidase I%2C Serine carboxypeptidase 65;Note=Similar to Serine carboxypeptidase 1.;Transcript_evidence=AK062220 (DDBJ%2C Best hit);ORF_evidence=P37890 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563),Peptidase S10%2C serine carboxypeptidase%2C active site (IPR018202);NIAS_FLcDNA=001-047-B07;Oryzabase=13757;Expression=AK062220;TENOR=Os12t0257000-03;KEGG=Os12t0257000-03 (EC:3.4.16.5)
Chr12	irgsp1_rep	CDS	8830433	8830551	.	-	0	Parent=Os12t0257000-03
Chr12	irgsp1_rep	CDS	8830187	8830232	.	-	1	Parent=Os12t0257000-03
Chr12	irgsp1_rep	CDS	8829904	8829987	.	-	0	Parent=Os12t0257000-03
Chr12	irgsp1_rep	three_prime_UTR	8829575	8829903	.	-	.	Parent=Os12t0257000-03
Chr12	irgsp1_rep	mRNA	8845834	8846234	.	+	.	ID=Os12t0257400-00;Name=Os12t0257400-00;Locus_id=Os12g0257400;Note=Similar to Endochitinase A2.;Transcript_evidence=AK249572 (DDBJ);ORF_evidence=B4G1H3 (UniProt);TENOR=Os12t0257400-00;KEGG=Os12t0257400-00
Chr12	irgsp1_rep	CDS	8845834	8846016	.	+	0	Parent=Os12t0257400-00
Chr12	irgsp1_rep	CDS	8846072	8846230	.	+	0	Parent=Os12t0257400-00
Chr12	irgsp1_rep	three_prime_UTR	8846231	8846234	.	+	.	Parent=Os12t0257400-00
Chr12	irgsp1_rep	mRNA	8852645	8853021	.	+	.	ID=Os12t0257450-01;Name=Os12t0257450-01;Locus_id=Os12g0257450;Note=Non-protein coding transcript.;Transcript_evidence=AK242386 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080048B05;TENOR=Os12t0257450-01
Chr12	irgsp1_rep	exon	8852645	8853021	.	+	.	Parent=Os12t0257450-01
Chr12	irgsp1_rep	mRNA	8859355	8860654	.	+	.	ID=Os12t0257500-01;Name=Os12t0257500-01;Locus_id=Os12g0257500;Note=Conserved hypothetical protein.;Transcript_evidence=AK106104 (DDBJ%2C Best hit);ORF_evidence=B9GCM4 (UniProt);NIAS_FLcDNA=001-207-C10;Expression=AK106104;TENOR=Os12t0257500-01;KEGG=Os12t0257500-01
Chr12	irgsp1_rep	five_prime_UTR	8859355	8859424	.	+	.	Parent=Os12t0257500-01
Chr12	irgsp1_rep	CDS	8859425	8860396	.	+	0	Parent=Os12t0257500-01
Chr12	irgsp1_rep	three_prime_UTR	8860397	8860654	.	+	.	Parent=Os12t0257500-01
Chr12	irgsp1_rep	mRNA	8859415	8860654	.	+	.	ID=Os12t0257500-02;Name=Os12t0257500-02;Locus_id=Os12g0257500;Note=Conserved hypothetical protein.;Transcript_evidence=AK106000 (DDBJ%2C Best hit);ORF_evidence=B9GCM4 (UniProt);NIAS_FLcDNA=001-205-H11;Expression=AK106000;TENOR=Os12t0257500-02;KEGG=Os12t0257500-02
Chr12	irgsp1_rep	five_prime_UTR	8859415	8859424	.	+	.	Parent=Os12t0257500-02
Chr12	irgsp1_rep	CDS	8859425	8860396	.	+	0	Parent=Os12t0257500-02
Chr12	irgsp1_rep	three_prime_UTR	8860397	8860654	.	+	.	Parent=Os12t0257500-02
Chr12	irgsp1_rep	mRNA	8869547	8875025	.	+	.	ID=Os12t0257600-00;Name=Os12t0257600-00;Locus_id=Os12g0257600;CGSNL Gene Symbol=LAC28;CGSNL Gene Name=LACCASE 28;Oryzabase Gene Symbol Synonym(s)=OsLAC28;Oryzabase Gene Name Synonym(s)=laccase 28;Note=Similar to Laccase-25.;Transcript_evidence=CT835556 (DDBJ%2C Best hit);ORF_evidence=Q0IP28 (UniProt);GO=Biological Process: lignin catabolic process (GO:0046274),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: apoplast (GO:0048046),Molecular Function: copper ion binding (GO:0005507),Molecular Function: laccase activity (GO:0008471),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Multicopper oxidase%2C type 1 (IPR001117),Multicopper oxidase%2C copper-binding site (IPR002355),Cupredoxin (IPR008972),Multicopper oxidase%2C type 2 (IPR011706),Multicopper oxidase%2C type 3 (IPR011707),Laccase (IPR017761);Oryzabase=21622;TENOR=Os12t0257600-00;KEGG=Os12t0257600-00
Chr12	irgsp1_rep	five_prime_UTR	8869547	8869568	.	+	.	Parent=Os12t0257600-00
Chr12	irgsp1_rep	CDS	8869569	8869646	.	+	0	Parent=Os12t0257600-00
Chr12	irgsp1_rep	CDS	8870756	8870910	.	+	0	Parent=Os12t0257600-00
Chr12	irgsp1_rep	CDS	8871127	8872007	.	+	1	Parent=Os12t0257600-00
Chr12	irgsp1_rep	CDS	8874025	8874495	.	+	2	Parent=Os12t0257600-00
Chr12	irgsp1_rep	CDS	8874585	8874715	.	+	2	Parent=Os12t0257600-00
Chr12	irgsp1_rep	three_prime_UTR	8874716	8875025	.	+	.	Parent=Os12t0257600-00
Chr12	irgsp1_rep	mRNA	8883123	8884572	.	+	.	ID=Os12t0257900-01;Name=Os12t0257900-01;Locus_id=Os12g0257900;Note=Similar to Receptor-like kinase.;Transcript_evidence=AK103894 (DDBJ%2C Best hit);ORF_evidence=Q25A01 (UniProt);GO=Biological Process: recognition of pollen (GO:0048544),Molecular Function: sugar binding (GO:0005529);InterPro=S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),PAN-2 domain (IPR013227);NIAS_FLcDNA=J033150F13;Expression=AK103894;TENOR=Os12t0257900-01;KEGG=Os12t0257900-01
Chr12	irgsp1_rep	five_prime_UTR	8883123	8883165	.	+	.	Parent=Os12t0257900-01
Chr12	irgsp1_rep	CDS	8883166	8884506	.	+	0	Parent=Os12t0257900-01
Chr12	irgsp1_rep	three_prime_UTR	8884507	8884572	.	+	.	Parent=Os12t0257900-01
Chr12	irgsp1_rep	mRNA	8883164	8884514	.	+	.	ID=Os12t0257900-02;Name=Os12t0257900-02;Locus_id=Os12g0257900;Note=Similar to Receptor-like kinase.;Transcript_evidence=AK110951 (DDBJ%2C Best hit);ORF_evidence=Q25A01 (UniProt);GO=Biological Process: recognition of pollen (GO:0048544),Molecular Function: sugar binding (GO:0005529);InterPro=S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),PAN-2 domain (IPR013227);NIAS_FLcDNA=002-174-A01;Expression=AK110951;TENOR=Os12t0257900-02;KEGG=Os12t0257900-02
Chr12	irgsp1_rep	five_prime_UTR	8883164	8883165	.	+	.	Parent=Os12t0257900-02
Chr12	irgsp1_rep	CDS	8883166	8884506	.	+	0	Parent=Os12t0257900-02
Chr12	irgsp1_rep	three_prime_UTR	8884507	8884514	.	+	.	Parent=Os12t0257900-02
Chr12	irgsp1_rep	mRNA	8906428	8914969	.	-	.	ID=Os12t0258200-01;Name=Os12t0258200-01;Locus_id=Os12g0258200;RAP-DB Gene Symbol Synonym(s)=OsERdj7;RAP-DB Gene Name Synonym(s)=ER-resident J-protein 7;Oryzabase Gene Symbol Synonym(s)=OsDjC79%2C OsERdj7;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C79%2C ER-resident J-protein 7;Note=ER-resident J-protein%2C ER quality control in rice endosperm%2C Translocation of secretory proteins and protein degradation of unfolded or misfolded proteins;Transcript_evidence=AK102565;ORF_evidence=Q2QUP1;InterPro=Chaperone J-domain superfamily (IPR036869),DnaJ domain (IPR001623),DnaJ domain%2C conserved site (IPR018253);NIAS_FLcDNA=J033097K17;Manual Curation=January 9%2C 2020;Literature_PMID=31896032,24153418;Oryzabase=12236;Expression=AK102565;TENOR=Os12t0258200-01;KEGG=Os12t0258200-01;Subcellular location=endoplasmic reticulum (GO:0005783)
Chr12	irgsp1_rep	five_prime_UTR	8914781	8914969	.	-	.	Parent=Os12t0258200-01
Chr12	irgsp1_rep	CDS	8914635	8914780	.	-	0	Parent=Os12t0258200-01
Chr12	irgsp1_rep	CDS	8914491	8914553	.	-	1	Parent=Os12t0258200-01
Chr12	irgsp1_rep	CDS	8914335	8914401	.	-	1	Parent=Os12t0258200-01
Chr12	irgsp1_rep	CDS	8913155	8913214	.	-	0	Parent=Os12t0258200-01
Chr12	irgsp1_rep	CDS	8912289	8912339	.	-	0	Parent=Os12t0258200-01
Chr12	irgsp1_rep	CDS	8912120	8912200	.	-	0	Parent=Os12t0258200-01
Chr12	irgsp1_rep	CDS	8910552	8910664	.	-	0	Parent=Os12t0258200-01
Chr12	irgsp1_rep	CDS	8910068	8910185	.	-	1	Parent=Os12t0258200-01
Chr12	irgsp1_rep	CDS	8908233	8908359	.	-	0	Parent=Os12t0258200-01
Chr12	irgsp1_rep	CDS	8906889	8906992	.	-	2	Parent=Os12t0258200-01
Chr12	irgsp1_rep	three_prime_UTR	8906428	8906888	.	-	.	Parent=Os12t0258200-01
Chr12	irgsp1_rep	mRNA	8960777	8964016	.	+	.	ID=Os12t0258700-01;Name=Os12t0258700-01;Locus_id=Os12g0258700;CGSNL Gene Symbol=LAC29;CGSNL Gene Name=LACCASE 29;Oryzabase Gene Symbol Synonym(s)=OsLAC29;Oryzabase Gene Name Synonym(s)=laccase 29;Note=Cupredoxin domain containing protein.;Transcript_evidence=AK243030 (DDBJ%2C Best hit);ORF_evidence=Q2QUN2 (UniProt);GO=Biological Process: lignin catabolic process (GO:0046274),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: apoplast (GO:0048046),Molecular Function: copper ion binding (GO:0005507),Molecular Function: laccase activity (GO:0008471),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Multicopper oxidase%2C type 1 (IPR001117),Multicopper oxidase%2C copper-binding site (IPR002355),Cupredoxin (IPR008972),Multicopper oxidase%2C type 2 (IPR011706),Multicopper oxidase%2C type 3 (IPR011707),Laccase (IPR017761);NIAS_FLcDNA=J100004A16;Oryzabase=21623;TENOR=Os12t0258700-01;KEGG=Os12t0258700-01
Chr12	irgsp1_rep	five_prime_UTR	8960777	8960790	.	+	.	Parent=Os12t0258700-01
Chr12	irgsp1_rep	CDS	8960791	8960940	.	+	0	Parent=Os12t0258700-01
Chr12	irgsp1_rep	CDS	8961411	8961565	.	+	0	Parent=Os12t0258700-01
Chr12	irgsp1_rep	CDS	8961658	8962037	.	+	1	Parent=Os12t0258700-01
Chr12	irgsp1_rep	CDS	8962124	8963104	.	+	2	Parent=Os12t0258700-01
Chr12	irgsp1_rep	CDS	8963681	8963811	.	+	2	Parent=Os12t0258700-01
Chr12	irgsp1_rep	three_prime_UTR	8963812	8964016	.	+	.	Parent=Os12t0258700-01
Chr12	irgsp1_rep	mRNA	9073742	9077143	.	+	.	ID=Os12t0259800-00;Name=Os12t0259800-00;Locus_id=Os12g0259800;CGSNL Gene Symbol=LAC30;CGSNL Gene Name=LACCASE 30;Oryzabase Gene Symbol Synonym(s)=OsLAC30;Oryzabase Gene Name Synonym(s)=laccase 30;Note=Similar to Laccase-25.;Transcript_evidence=AK367576 (DDBJ);ORF_evidence=Q0IP28 (UniProt);GO=Biological Process: lignin catabolic process (GO:0046274),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: apoplast (GO:0048046),Molecular Function: copper ion binding (GO:0005507),Molecular Function: laccase activity (GO:0008471),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Multicopper oxidase%2C type 1 (IPR001117),Multicopper oxidase%2C copper-binding site (IPR002355),Cupredoxin (IPR008972),Multicopper oxidase%2C type 2 (IPR011706),Multicopper oxidase%2C type 3 (IPR011707),Laccase (IPR017761);Oryzabase=21624;TENOR=Os12t0259800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	9073742	9073846	.	+	0	Parent=Os12t0259800-00
Chr12	irgsp1_rep	CDS	9074368	9074522	.	+	0	Parent=Os12t0259800-00
Chr12	irgsp1_rep	CDS	9074817	9075196	.	+	1	Parent=Os12t0259800-00
Chr12	irgsp1_rep	CDS	9075282	9076256	.	+	2	Parent=Os12t0259800-00
Chr12	irgsp1_rep	CDS	9076984	9077117	.	+	2	Parent=Os12t0259800-00
Chr12	irgsp1_rep	three_prime_UTR	9077118	9077143	.	+	.	Parent=Os12t0259800-00
Chr12	irgsp1_rep	mRNA	9124141	9125439	.	-	.	ID=Os12t0260500-01;Name=Os12t0260500-01;Locus_id=Os12g0260500;Note=Similar to Oxidoreductase%2C short chain dehydrogenase/reductase family protein%2C expressed.;Transcript_evidence=AK243680 (DDBJ%2C Best hit);ORF_evidence=Q2QUJ9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040),Polyketide synthase/Fatty acid synthase%2C KR (IPR020842);NIAS_FLcDNA=J100090I20;TENOR=Os12t0260500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	9125414	9125439	.	-	.	Parent=Os12t0260500-01
Chr12	irgsp1_rep	CDS	9125337	9125413	.	-	0	Parent=Os12t0260500-01
Chr12	irgsp1_rep	CDS	9125167	9125256	.	-	1	Parent=Os12t0260500-01
Chr12	irgsp1_rep	CDS	9124270	9125071	.	-	1	Parent=Os12t0260500-01
Chr12	irgsp1_rep	three_prime_UTR	9124141	9124269	.	-	.	Parent=Os12t0260500-01
Chr12	irgsp1_rep	mRNA	9164566	9168540	.	+	.	ID=Os12t0261250-01;Name=Os12t0261250-01;Locus_id=Os12g0261250;Note=Conserved hypothetical protein.;Transcript_evidence=AK288356 (DDBJ%2C Best hit);ORF_evidence=Q7EZP1 (UniProt);NIAS_FLcDNA=J090024J04;TENOR=Os12t0261250-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	9164566	9168269	.	+	.	Parent=Os12t0261250-01
Chr12	irgsp1_rep	CDS	9168270	9168467	.	+	0	Parent=Os12t0261250-01
Chr12	irgsp1_rep	three_prime_UTR	9168468	9168540	.	+	.	Parent=Os12t0261250-01
Chr12	irgsp1_rep	mRNA	9179690	9182665	.	+	.	ID=Os12t0261300-01;Name=Os12t0261300-01;Locus_id=Os12g0261300;Note=Conserved hypothetical protein.;Transcript_evidence=AK101180 (DDBJ%2C Best hit);ORF_evidence=Q2QUJ1 (UniProt);NIAS_FLcDNA=J033029E20;TENOR=Os12t0261300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	9179690	9179690	.	+	.	Parent=Os12t0261300-01
Chr12	irgsp1_rep	CDS	9179691	9181307	.	+	0	Parent=Os12t0261300-01
Chr12	irgsp1_rep	CDS	9181451	9182140	.	+	0	Parent=Os12t0261300-01
Chr12	irgsp1_rep	three_prime_UTR	9182141	9182665	.	+	.	Parent=Os12t0261300-01
Chr12	irgsp1_rep	mRNA	9179771	9182316	.	+	.	ID=Os12t0261300-02;Name=Os12t0261300-02;Locus_id=Os12g0261300;Note=Hypothetical conserved gene.;Transcript_evidence=AK060733 (DDBJ%2C Best hit);ORF_evidence=Q2QUJ1 (UniProt);NIAS_FLcDNA=001-032-A09;Expression=AK060733;TENOR=Os12t0261300-02;KEGG=Os12t0261300-02
Chr12	irgsp1_rep	five_prime_UTR	9179771	9179771	.	+	.	Parent=Os12t0261300-02
Chr12	irgsp1_rep	CDS	9179772	9181307	.	+	0	Parent=Os12t0261300-02
Chr12	irgsp1_rep	CDS	9181451	9182140	.	+	0	Parent=Os12t0261300-02
Chr12	irgsp1_rep	three_prime_UTR	9182141	9182316	.	+	.	Parent=Os12t0261300-02
Chr12	irgsp1_rep	mRNA	9182288	9182918	.	-	.	ID=Os12t0261450-01;Name=Os12t0261450-01;Locus_id=Os12g0261450;Note=Non-protein coding transcript.;Transcript_evidence=AK241080 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065072H18;TENOR=Os12t0261450-01
Chr12	irgsp1_rep	exon	9182288	9182918	.	-	.	Parent=Os12t0261450-01
Chr12	irgsp1_rep	mRNA	9196122	9196525	.	+	.	ID=Os12t0261575-00;Name=Os12t0261575-00;Locus_id=Os12g0261575;Note=Hypothetical protein.;Transcript_evidence=FP097651 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0261575-00
Chr12	irgsp1_rep	CDS	9196122	9196525	.	+	0	Parent=Os12t0261575-00
Chr12	irgsp1_rep	mRNA	9209610	9211645	.	+	.	ID=Os12t0262100-01;Name=Os12t0262100-01;Locus_id=Os12g0262100;Note=HAT dimerisation domain containing protein.;Transcript_evidence=AK106352 (DDBJ%2C Best hit);ORF_evidence=B9FN83 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein dimerization activity (GO:0046983);InterPro=HAT dimerisation (IPR008906),Ribonuclease H-like (IPR012337);NIAS_FLcDNA=002-102-A01;Expression=AK106352;TENOR=Os12t0262100-01;KEGG=Os12t0262100-01
Chr12	irgsp1_rep	five_prime_UTR	9209610	9209618	.	+	.	Parent=Os12t0262100-01
Chr12	irgsp1_rep	CDS	9209619	9211544	.	+	0	Parent=Os12t0262100-01
Chr12	irgsp1_rep	three_prime_UTR	9211545	9211645	.	+	.	Parent=Os12t0262100-01
Chr12	irgsp1_rep	mRNA	9246620	9250382	.	+	.	ID=Os12t0262700-01;Name=Os12t0262700-01;Locus_id=Os12g0262700;Note=Alpha/beta hydrolase family protein.;Transcript_evidence=AK069945 (DDBJ%2C Best hit);ORF_evidence=XP_002879795.1 (RefSeq);InterPro=Alpha/beta hydrolase fold-1 (IPR000073);NIAS_FLcDNA=J023036E17;Expression=AK069945;TENOR=Os12t0262700-01;KEGG=Os12t0262700-01
Chr12	irgsp1_rep	five_prime_UTR	9246620	9246759	.	+	.	Parent=Os12t0262700-01
Chr12	irgsp1_rep	CDS	9246760	9246789	.	+	0	Parent=Os12t0262700-01
Chr12	irgsp1_rep	CDS	9246955	9247048	.	+	0	Parent=Os12t0262700-01
Chr12	irgsp1_rep	CDS	9247171	9247203	.	+	2	Parent=Os12t0262700-01
Chr12	irgsp1_rep	CDS	9247376	9247522	.	+	2	Parent=Os12t0262700-01
Chr12	irgsp1_rep	CDS	9248985	9249115	.	+	2	Parent=Os12t0262700-01
Chr12	irgsp1_rep	CDS	9249272	9249409	.	+	0	Parent=Os12t0262700-01
Chr12	irgsp1_rep	CDS	9249553	9249651	.	+	0	Parent=Os12t0262700-01
Chr12	irgsp1_rep	CDS	9250003	9250221	.	+	0	Parent=Os12t0262700-01
Chr12	irgsp1_rep	three_prime_UTR	9250222	9250382	.	+	.	Parent=Os12t0262700-01
Chr12	irgsp1_rep	mRNA	9263755	9266580	.	-	.	ID=Os12t0263000-01;Name=Os12t0263000-01;Locus_id=Os12g0263000;CGSNL Gene Symbol=GS2;CGSNL Gene Name=GLUTATHIONE SYNTHETASE 2;Oryzabase Gene Symbol Synonym(s)=OsGS2;Oryzabase Gene Name Synonym(s)=glutathione synthetase 2%2C hydroxymethyl-glutathione synthetase;Note=Similar to Glutathione synthase.;Transcript_evidence=AK099555 (DDBJ%2C Best hit);ORF_evidence=B7SDD8 (UniProt);GO=Biological Process: glutathione biosynthetic process (GO:0006750),Molecular Function: catalytic activity (GO:0003824),Molecular Function: glutathione synthase activity (GO:0004363),Molecular Function: ATP binding (GO:0005524),Molecular Function: ligase activity (GO:0016874);InterPro=Glutathione synthase%2C substrate-binding%2C eukaryotic (IPR004887),Glutathione synthase%2C eukaryotic (IPR005615),Glutathione synthase%2C alpha-helical%2C eukaryotic (IPR014042),Glutathione synthase%2C C-terminal%2C eukaryotic (IPR014709),PreATP-grasp-like fold (IPR016185);NIAS_FLcDNA=J013033N23;Oryzabase=22999;Expression=AK099555;TENOR=Os12t0263000-01;KEGG=Os12t0263000-01 (EC:6.3.2.3);B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	9266579	9266580	.	-	.	Parent=Os12t0263000-01
Chr12	irgsp1_rep	CDS	9266531	9266578	.	-	0	Parent=Os12t0263000-01
Chr12	irgsp1_rep	CDS	9266276	9266406	.	-	0	Parent=Os12t0263000-01
Chr12	irgsp1_rep	CDS	9265552	9265674	.	-	1	Parent=Os12t0263000-01
Chr12	irgsp1_rep	CDS	9265400	9265480	.	-	1	Parent=Os12t0263000-01
Chr12	irgsp1_rep	CDS	9265107	9265187	.	-	1	Parent=Os12t0263000-01
Chr12	irgsp1_rep	CDS	9264953	9265022	.	-	1	Parent=Os12t0263000-01
Chr12	irgsp1_rep	CDS	9264743	9264864	.	-	0	Parent=Os12t0263000-01
Chr12	irgsp1_rep	CDS	9264479	9264617	.	-	1	Parent=Os12t0263000-01
Chr12	irgsp1_rep	CDS	9264369	9264398	.	-	0	Parent=Os12t0263000-01
Chr12	irgsp1_rep	three_prime_UTR	9264207	9264368	.	-	.	Parent=Os12t0263000-01
Chr12	irgsp1_rep	three_prime_UTR	9263755	9264129	.	-	.	Parent=Os12t0263000-01
Chr12	irgsp1_rep	mRNA	9263751	9270105	.	-	.	ID=Os12t0263000-02;Name=Os12t0263000-02;Locus_id=Os12g0263000;RAP-DB Gene Symbol Synonym(s)=OsGS2;RAP-DB Gene Name Synonym(s)=glutathione synthetase 2%2C hydroxymethyl-glutathione synthetase;CGSNL Gene Symbol=GS2;CGSNL Gene Name=GLUTATHIONE SYNTHETASE 2;Oryzabase Gene Symbol Synonym(s)=OsGS2;Oryzabase Gene Name Synonym(s)=glutathione synthetase 2%2C hydroxymethyl-glutathione synthetase;Note=Hydroxymethyl-glutathione synthetase;Transcript_evidence=EU267952 (Ilpumbyeo);ORF_evidence=B7SDD8;GO=Biological Process: glutathione biosynthetic process (GO:0006750),Molecular Function: glutathione synthase activity (GO:0004363),Molecular Function: ATP binding (GO:0005524),Molecular Function: ligase activity (GO:0016874);InterPro=Glutathione synthase%2C N-terminal%2C eukaryotic (IPR014049),Glutathione synthase%2C alpha-helical (IPR014042),Glutathione synthase%2C substrate-binding domain superfamily (IPR037013),Pre-ATP-grasp domain superfamily (IPR016185),Glutathione synthase%2C C-terminal%2C eukaryotic (IPR014709),Glutathione synthase (IPR005615),Glutathione synthase%2C substrate-binding domain (IPR004887);Manual Curation=August 8%2C 2019;Literature_PMID=31245762;Oryzabase=22999
Chr12	irgsp1_rep	five_prime_UTR	9270057	9270105	.	-	.	Parent=Os12t0263000-02
Chr12	irgsp1_rep	CDS	9269745	9270056	.	-	0	Parent=Os12t0263000-02
Chr12	irgsp1_rep	CDS	9266840	9267009	.	-	0	Parent=Os12t0263000-02
Chr12	irgsp1_rep	CDS	9266531	9266606	.	-	1	Parent=Os12t0263000-02
Chr12	irgsp1_rep	CDS	9266276	9266406	.	-	0	Parent=Os12t0263000-02
Chr12	irgsp1_rep	CDS	9265552	9265674	.	-	1	Parent=Os12t0263000-02
Chr12	irgsp1_rep	CDS	9265400	9265480	.	-	1	Parent=Os12t0263000-02
Chr12	irgsp1_rep	CDS	9265107	9265187	.	-	1	Parent=Os12t0263000-02
Chr12	irgsp1_rep	CDS	9264953	9265022	.	-	1	Parent=Os12t0263000-02
Chr12	irgsp1_rep	CDS	9264743	9264864	.	-	0	Parent=Os12t0263000-02
Chr12	irgsp1_rep	CDS	9264478	9264617	.	-	1	Parent=Os12t0263000-02
Chr12	irgsp1_rep	CDS	9264207	9264399	.	-	2	Parent=Os12t0263000-02
Chr12	irgsp1_rep	CDS	9264006	9264129	.	-	1	Parent=Os12t0263000-02
Chr12	irgsp1_rep	three_prime_UTR	9263751	9264005	.	-	.	Parent=Os12t0263000-02
Chr12	irgsp1_rep	mRNA	9274181	9276999	.	-	.	ID=Os12t0263100-01;Name=Os12t0263100-01;Locus_id=Os12g0263100;Note=Similar to Zinc finger%2C DHHC domain containing 4.;Transcript_evidence=AK102127 (DDBJ%2C Best hit);ORF_evidence=B8AZF0 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C DHHC-type%2C palmitoyltransferase (IPR001594);NIAS_FLcDNA=J033084P13;Expression=AK102127;TENOR=Os12t0263100-01;KEGG=Os12t0263100-01
Chr12	irgsp1_rep	five_prime_UTR	9276870	9276999	.	-	.	Parent=Os12t0263100-01
Chr12	irgsp1_rep	CDS	9276771	9276869	.	-	0	Parent=Os12t0263100-01
Chr12	irgsp1_rep	CDS	9276572	9276685	.	-	0	Parent=Os12t0263100-01
Chr12	irgsp1_rep	CDS	9276125	9276496	.	-	0	Parent=Os12t0263100-01
Chr12	irgsp1_rep	CDS	9275740	9275808	.	-	0	Parent=Os12t0263100-01
Chr12	irgsp1_rep	CDS	9275572	9275643	.	-	0	Parent=Os12t0263100-01
Chr12	irgsp1_rep	CDS	9275329	9275457	.	-	0	Parent=Os12t0263100-01
Chr12	irgsp1_rep	CDS	9275137	9275217	.	-	0	Parent=Os12t0263100-01
Chr12	irgsp1_rep	CDS	9274880	9275044	.	-	0	Parent=Os12t0263100-01
Chr12	irgsp1_rep	CDS	9274307	9274789	.	-	0	Parent=Os12t0263100-01
Chr12	irgsp1_rep	three_prime_UTR	9274181	9274306	.	-	.	Parent=Os12t0263100-01
Chr12	irgsp1_rep	mRNA	9278224	9283540	.	-	.	ID=Os12t0263200-01;Name=Os12t0263200-01;Locus_id=Os12g0263200;Note=Pinoresinol-lariciresinol reductase TH2.;Transcript_evidence=AK241886 (DDBJ%2C Best hit);ORF_evidence=Q3KN72 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NmrA-like (IPR008030),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J065219F05;TENOR=Os12t0263200-01;KEGG=Os12t0263200-01
Chr12	irgsp1_rep	five_prime_UTR	9283483	9283540	.	-	.	Parent=Os12t0263200-01
Chr12	irgsp1_rep	CDS	9283147	9283482	.	-	0	Parent=Os12t0263200-01
Chr12	irgsp1_rep	CDS	9281724	9281964	.	-	0	Parent=Os12t0263200-01
Chr12	irgsp1_rep	CDS	9278890	9279093	.	-	2	Parent=Os12t0263200-01
Chr12	irgsp1_rep	CDS	9278403	9278566	.	-	2	Parent=Os12t0263200-01
Chr12	irgsp1_rep	three_prime_UTR	9278224	9278402	.	-	.	Parent=Os12t0263200-01
Chr12	irgsp1_rep	mRNA	9286790	9291494	.	-	.	ID=Os12t0263600-01;Name=Os12t0263600-01;Locus_id=Os12g0263600;Note=Similar to Isoflavone reductase-like protein 1.;Transcript_evidence=AK287747 (DDBJ%2C Best hit);ORF_evidence=Q3KN72 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NmrA-like (IPR008030),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J065152G10;TENOR=Os12t0263600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	9291441	9291494	.	-	.	Parent=Os12t0263600-01
Chr12	irgsp1_rep	CDS	9291105	9291440	.	-	0	Parent=Os12t0263600-01
Chr12	irgsp1_rep	CDS	9289152	9289178	.	-	0	Parent=Os12t0263600-01
Chr12	irgsp1_rep	three_prime_UTR	9288969	9289151	.	-	.	Parent=Os12t0263600-01
Chr12	irgsp1_rep	three_prime_UTR	9287325	9287528	.	-	.	Parent=Os12t0263600-01
Chr12	irgsp1_rep	three_prime_UTR	9286790	9287068	.	-	.	Parent=Os12t0263600-01
Chr12	irgsp1_rep	mRNA	9304480	9318122	.	-	.	ID=Os12t0263800-01;Name=Os12t0263800-01;Locus_id=Os12g0263800;Note=Similar to cDNA clone:J013002B21%2C full insert sequence.;Transcript_evidence=AK066839 (DDBJ%2C Best hit);ORF_evidence=B7EAJ3 (UniProt);NIAS_FLcDNA=J013088I10;TENOR=Os12t0263800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	9317730	9318122	.	-	.	Parent=Os12t0263800-01
Chr12	irgsp1_rep	five_prime_UTR	9310484	9310682	.	-	.	Parent=Os12t0263800-01
Chr12	irgsp1_rep	five_prime_UTR	9310315	9310373	.	-	.	Parent=Os12t0263800-01
Chr12	irgsp1_rep	five_prime_UTR	9309747	9309841	.	-	.	Parent=Os12t0263800-01
Chr12	irgsp1_rep	five_prime_UTR	9309541	9309664	.	-	.	Parent=Os12t0263800-01
Chr12	irgsp1_rep	five_prime_UTR	9308904	9308988	.	-	.	Parent=Os12t0263800-01
Chr12	irgsp1_rep	five_prime_UTR	9307763	9308037	.	-	.	Parent=Os12t0263800-01
Chr12	irgsp1_rep	five_prime_UTR	9306044	9306096	.	-	.	Parent=Os12t0263800-01
Chr12	irgsp1_rep	five_prime_UTR	9305830	9305954	.	-	.	Parent=Os12t0263800-01
Chr12	irgsp1_rep	five_prime_UTR	9305670	9305743	.	-	.	Parent=Os12t0263800-01
Chr12	irgsp1_rep	five_prime_UTR	9305061	9305181	.	-	.	Parent=Os12t0263800-01
Chr12	irgsp1_rep	CDS	9305038	9305060	.	-	0	Parent=Os12t0263800-01
Chr12	irgsp1_rep	CDS	9304799	9304876	.	-	1	Parent=Os12t0263800-01
Chr12	irgsp1_rep	CDS	9304532	9304706	.	-	1	Parent=Os12t0263800-01
Chr12	irgsp1_rep	three_prime_UTR	9304480	9304531	.	-	.	Parent=Os12t0263800-01
Chr12	irgsp1_rep	mRNA	9315230	9318103	.	-	.	ID=Os12t0263800-02;Name=Os12t0263800-02;Locus_id=Os12g0263800;Note=Similar to cDNA%2C clone: J065219F05%2C full insert sequence.;Transcript_evidence=AK065951 (DDBJ%2C Best hit);ORF_evidence=Q3KN72 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NmrA-like (IPR008030),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013045C05;Expression=AK065951;TENOR=Os12t0263800-02;KEGG=Os12t0263800-02
Chr12	irgsp1_rep	five_prime_UTR	9318066	9318103	.	-	.	Parent=Os12t0263800-02
Chr12	irgsp1_rep	CDS	9317691	9318065	.	-	0	Parent=Os12t0263800-02
Chr12	irgsp1_rep	three_prime_UTR	9315230	9317690	.	-	.	Parent=Os12t0263800-02
Chr12	irgsp1_rep	mRNA	9299518	9311555	.	-	.	ID=Os12t0263800-03;Name=Os12t0263800-03;Locus_id=Os12g0263800;Note=Similar to Isoflavone reductase-like protein 1.;Transcript_evidence=AK065157 (DDBJ%2C Best hit);ORF_evidence=Q3KN72 (UniProt);NIAS_FLcDNA=J013002B21;TENOR=Os12t0263800-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	9311312	9311555	.	-	.	Parent=Os12t0263800-03
Chr12	irgsp1_rep	five_prime_UTR	9310827	9311238	.	-	.	Parent=Os12t0263800-03
Chr12	irgsp1_rep	five_prime_UTR	9310484	9310682	.	-	.	Parent=Os12t0263800-03
Chr12	irgsp1_rep	five_prime_UTR	9310315	9310373	.	-	.	Parent=Os12t0263800-03
Chr12	irgsp1_rep	five_prime_UTR	9309747	9309841	.	-	.	Parent=Os12t0263800-03
Chr12	irgsp1_rep	five_prime_UTR	9308904	9308988	.	-	.	Parent=Os12t0263800-03
Chr12	irgsp1_rep	five_prime_UTR	9307967	9308037	.	-	.	Parent=Os12t0263800-03
Chr12	irgsp1_rep	five_prime_UTR	9307763	9307854	.	-	.	Parent=Os12t0263800-03
Chr12	irgsp1_rep	five_prime_UTR	9306044	9306096	.	-	.	Parent=Os12t0263800-03
Chr12	irgsp1_rep	five_prime_UTR	9305830	9305954	.	-	.	Parent=Os12t0263800-03
Chr12	irgsp1_rep	five_prime_UTR	9305670	9305743	.	-	.	Parent=Os12t0263800-03
Chr12	irgsp1_rep	five_prime_UTR	9304799	9304876	.	-	.	Parent=Os12t0263800-03
Chr12	irgsp1_rep	five_prime_UTR	9304540	9304706	.	-	.	Parent=Os12t0263800-03
Chr12	irgsp1_rep	five_prime_UTR	9301745	9303302	.	-	.	Parent=Os12t0263800-03
Chr12	irgsp1_rep	five_prime_UTR	9300194	9300306	.	-	.	Parent=Os12t0263800-03
Chr12	irgsp1_rep	CDS	9300103	9300193	.	-	0	Parent=Os12t0263800-03
Chr12	irgsp1_rep	CDS	9299683	9299789	.	-	2	Parent=Os12t0263800-03
Chr12	irgsp1_rep	three_prime_UTR	9299518	9299682	.	-	.	Parent=Os12t0263800-03
Chr12	irgsp1_rep	mRNA	9302009	9302295	.	+	.	ID=Os12t0263900-00;Name=Os12t0263900-00;Locus_id=Os12g0263900;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001066528.1 (RefSeq);TENOR=Os12t0263900-00
Chr12	irgsp1_rep	CDS	9302009	9302023	.	+	0	Parent=Os12t0263900-00
Chr12	irgsp1_rep	CDS	9302098	9302295	.	+	0	Parent=Os12t0263900-00
Chr12	irgsp1_rep	mRNA	9350914	9365572	.	+	.	ID=Os12t0264500-01;Name=Os12t0264500-01;Locus_id=Os12g0264500;Note=Similar to CoA-thioester hydrolase CHY1 (3-hydroxyisobutyryl-coenzyme A hydrolase).;Transcript_evidence=AK100907 (DDBJ%2C Best hit);ORF_evidence=Q2QUG4 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Crotonase%2C core (IPR001753);NIAS_FLcDNA=J023132F01;Expression=AK100907;TENOR=Os12t0264500-01;KEGG=Os12t0264500-01
Chr12	irgsp1_rep	five_prime_UTR	9350914	9351049	.	+	.	Parent=Os12t0264500-01
Chr12	irgsp1_rep	five_prime_UTR	9351219	9351295	.	+	.	Parent=Os12t0264500-01
Chr12	irgsp1_rep	CDS	9351296	9351318	.	+	0	Parent=Os12t0264500-01
Chr12	irgsp1_rep	CDS	9353624	9353718	.	+	1	Parent=Os12t0264500-01
Chr12	irgsp1_rep	CDS	9353886	9354007	.	+	2	Parent=Os12t0264500-01
Chr12	irgsp1_rep	CDS	9354081	9354197	.	+	0	Parent=Os12t0264500-01
Chr12	irgsp1_rep	CDS	9357980	9358060	.	+	0	Parent=Os12t0264500-01
Chr12	irgsp1_rep	CDS	9358187	9358255	.	+	0	Parent=Os12t0264500-01
Chr12	irgsp1_rep	CDS	9358710	9358773	.	+	0	Parent=Os12t0264500-01
Chr12	irgsp1_rep	CDS	9358971	9359050	.	+	2	Parent=Os12t0264500-01
Chr12	irgsp1_rep	CDS	9359147	9359230	.	+	0	Parent=Os12t0264500-01
Chr12	irgsp1_rep	CDS	9359401	9359485	.	+	0	Parent=Os12t0264500-01
Chr12	irgsp1_rep	CDS	9360641	9360726	.	+	2	Parent=Os12t0264500-01
Chr12	irgsp1_rep	CDS	9360907	9361028	.	+	0	Parent=Os12t0264500-01
Chr12	irgsp1_rep	CDS	9361824	9361884	.	+	1	Parent=Os12t0264500-01
Chr12	irgsp1_rep	CDS	9361964	9362062	.	+	0	Parent=Os12t0264500-01
Chr12	irgsp1_rep	CDS	9364605	9364706	.	+	0	Parent=Os12t0264500-01
Chr12	irgsp1_rep	CDS	9364786	9364827	.	+	0	Parent=Os12t0264500-01
Chr12	irgsp1_rep	CDS	9364932	9365069	.	+	0	Parent=Os12t0264500-01
Chr12	irgsp1_rep	three_prime_UTR	9365070	9365572	.	+	.	Parent=Os12t0264500-01
Chr12	irgsp1_rep	mRNA	9353527	9365572	.	+	.	ID=Os12t0264500-02;Name=Os12t0264500-02;Locus_id=Os12g0264500;Note=Similar to CHY1.;Transcript_evidence=AK071318 (DDBJ%2C Best hit);ORF_evidence=NP_001150059.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Crotonase%2C core (IPR001753);NIAS_FLcDNA=J023086L03;TENOR=Os12t0264500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	9353527	9353528	.	+	.	Parent=Os12t0264500-02
Chr12	irgsp1_rep	CDS	9353529	9353718	.	+	0	Parent=Os12t0264500-02
Chr12	irgsp1_rep	CDS	9353886	9354007	.	+	2	Parent=Os12t0264500-02
Chr12	irgsp1_rep	CDS	9354081	9354197	.	+	0	Parent=Os12t0264500-02
Chr12	irgsp1_rep	CDS	9357980	9358060	.	+	0	Parent=Os12t0264500-02
Chr12	irgsp1_rep	CDS	9358187	9358255	.	+	0	Parent=Os12t0264500-02
Chr12	irgsp1_rep	CDS	9358710	9358773	.	+	0	Parent=Os12t0264500-02
Chr12	irgsp1_rep	CDS	9358971	9359050	.	+	2	Parent=Os12t0264500-02
Chr12	irgsp1_rep	CDS	9359147	9359230	.	+	0	Parent=Os12t0264500-02
Chr12	irgsp1_rep	CDS	9359401	9359485	.	+	0	Parent=Os12t0264500-02
Chr12	irgsp1_rep	CDS	9360641	9360726	.	+	2	Parent=Os12t0264500-02
Chr12	irgsp1_rep	CDS	9360907	9361028	.	+	0	Parent=Os12t0264500-02
Chr12	irgsp1_rep	CDS	9361824	9361884	.	+	1	Parent=Os12t0264500-02
Chr12	irgsp1_rep	CDS	9361964	9362062	.	+	0	Parent=Os12t0264500-02
Chr12	irgsp1_rep	CDS	9364605	9364706	.	+	0	Parent=Os12t0264500-02
Chr12	irgsp1_rep	CDS	9364786	9364827	.	+	0	Parent=Os12t0264500-02
Chr12	irgsp1_rep	CDS	9364932	9365069	.	+	0	Parent=Os12t0264500-02
Chr12	irgsp1_rep	three_prime_UTR	9365070	9365572	.	+	.	Parent=Os12t0264500-02
Chr12	irgsp1_rep	mRNA	9356792	9363788	.	+	.	ID=Os12t0264500-03;Name=Os12t0264500-03;Locus_id=Os12g0264500;Note=Conserved hypothetical protein.;Transcript_evidence=AK064773 (DDBJ%2C Best hit);ORF_evidence=B8AZF5 (UniProt);NIAS_FLcDNA=J013000A22;TENOR=Os12t0264500-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	9356792	9357230	.	+	.	Parent=Os12t0264500-03
Chr12	irgsp1_rep	CDS	9357231	9357467	.	+	0	Parent=Os12t0264500-03
Chr12	irgsp1_rep	three_prime_UTR	9357468	9358060	.	+	.	Parent=Os12t0264500-03
Chr12	irgsp1_rep	three_prime_UTR	9358187	9358255	.	+	.	Parent=Os12t0264500-03
Chr12	irgsp1_rep	three_prime_UTR	9358710	9358773	.	+	.	Parent=Os12t0264500-03
Chr12	irgsp1_rep	three_prime_UTR	9358971	9359050	.	+	.	Parent=Os12t0264500-03
Chr12	irgsp1_rep	three_prime_UTR	9359147	9359230	.	+	.	Parent=Os12t0264500-03
Chr12	irgsp1_rep	three_prime_UTR	9359401	9359485	.	+	.	Parent=Os12t0264500-03
Chr12	irgsp1_rep	three_prime_UTR	9360641	9360726	.	+	.	Parent=Os12t0264500-03
Chr12	irgsp1_rep	three_prime_UTR	9360907	9361028	.	+	.	Parent=Os12t0264500-03
Chr12	irgsp1_rep	three_prime_UTR	9361824	9361884	.	+	.	Parent=Os12t0264500-03
Chr12	irgsp1_rep	three_prime_UTR	9361964	9363788	.	+	.	Parent=Os12t0264500-03
Chr12	irgsp1_rep	mRNA	9362063	9363776	.	+	.	ID=Os12t0264500-04;Name=Os12t0264500-04;Locus_id=Os12g0264500;Note=Similar to cDNA clone:J013000A22%2C full insert sequence.;Transcript_evidence=AK100009 (DDBJ%2C Best hit);ORF_evidence=B7EA00 (UniProt);NIAS_FLcDNA=J013138B09;Expression=AK100009;TENOR=Os12t0264500-04;KEGG=Os12t0264500-04
Chr12	irgsp1_rep	CDS	9362063	9362203	.	+	0	Parent=Os12t0264500-04
Chr12	irgsp1_rep	three_prime_UTR	9362204	9363776	.	+	.	Parent=Os12t0264500-04
Chr12	irgsp1_rep	mRNA	9371172	9373186	.	-	.	ID=Os12t0264650-00;Name=Os12t0264650-00;Locus_id=Os12g0264650;Note=Hypothetical conserved gene.;Transcript_evidence=AK242103 (DDBJ%2C Secondary hit);ORF_evidence=NP_001174918.1 (RefSeq);TENOR=Os12t0264650-00;KEGG=Os12t0264650-00
Chr12	irgsp1_rep	five_prime_UTR	9373186	9373186	.	-	.	Parent=Os12t0264650-00
Chr12	irgsp1_rep	CDS	9372877	9373185	.	-	0	Parent=Os12t0264650-00
Chr12	irgsp1_rep	three_prime_UTR	9372865	9372876	.	-	.	Parent=Os12t0264650-00
Chr12	irgsp1_rep	three_prime_UTR	9372559	9372682	.	-	.	Parent=Os12t0264650-00
Chr12	irgsp1_rep	three_prime_UTR	9371733	9372542	.	-	.	Parent=Os12t0264650-00
Chr12	irgsp1_rep	three_prime_UTR	9371384	9371634	.	-	.	Parent=Os12t0264650-00
Chr12	irgsp1_rep	three_prime_UTR	9371172	9371220	.	-	.	Parent=Os12t0264650-00
Chr12	irgsp1_rep	mRNA	9374938	9375975	.	+	.	ID=Os12t0264800-01;Name=Os12t0264800-01;Locus_id=Os12g0264800;Note=Conserved hypothetical protein.;Transcript_evidence=AK061213 (DDBJ%2C Best hit);ORF_evidence=Q10PC1 (UniProt);NIAS_FLcDNA=006-210-D08;TENOR=Os12t0264800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	9374938	9375142	.	+	.	Parent=Os12t0264800-01
Chr12	irgsp1_rep	CDS	9375143	9375409	.	+	0	Parent=Os12t0264800-01
Chr12	irgsp1_rep	three_prime_UTR	9375410	9375975	.	+	.	Parent=Os12t0264800-01
Chr12	irgsp1_rep	mRNA	9397067	9400391	.	-	.	ID=Os12t0265100-01;Name=Os12t0265100-01;Locus_id=Os12g0265100;Note=Similar to Pinoresinol-lariciresinol reductase TH2.;Transcript_evidence=AK065317 (DDBJ%2C Best hit);ORF_evidence=Q3KN72 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NmrA-like (IPR008030),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013002P09;Expression=AK065317;TENOR=Os12t0265100-01;KEGG=Os12t0265100-01
Chr12	irgsp1_rep	five_prime_UTR	9400371	9400391	.	-	.	Parent=Os12t0265100-01
Chr12	irgsp1_rep	CDS	9400035	9400370	.	-	0	Parent=Os12t0265100-01
Chr12	irgsp1_rep	CDS	9398752	9398992	.	-	0	Parent=Os12t0265100-01
Chr12	irgsp1_rep	CDS	9397805	9398008	.	-	2	Parent=Os12t0265100-01
Chr12	irgsp1_rep	CDS	9397303	9397466	.	-	2	Parent=Os12t0265100-01
Chr12	irgsp1_rep	three_prime_UTR	9397067	9397302	.	-	.	Parent=Os12t0265100-01
Chr12	irgsp1_rep	mRNA	9397094	9398863	.	-	.	ID=Os12t0265100-02;Name=Os12t0265100-02;Locus_id=Os12g0265100;Note=Similar to cDNA%2C clone: J065219F05%2C full insert sequence.;Transcript_evidence=AK062049 (DDBJ%2C Best hit);ORF_evidence=P52581 (UniProt);InterPro=NmrA-like (IPR008030);NIAS_FLcDNA=001-044-B02;Expression=AK062049;TENOR=Os12t0265100-02;KEGG=Os12t0265100-02
Chr12	irgsp1_rep	CDS	9398752	9398863	.	-	0	Parent=Os12t0265100-02
Chr12	irgsp1_rep	CDS	9397805	9398008	.	-	2	Parent=Os12t0265100-02
Chr12	irgsp1_rep	CDS	9397303	9397466	.	-	2	Parent=Os12t0265100-02
Chr12	irgsp1_rep	three_prime_UTR	9397094	9397302	.	-	.	Parent=Os12t0265100-02
Chr12	irgsp1_rep	mRNA	9429281	9433003	.	-	.	ID=Os12t0265201-01;Name=Os12t0265201-01;Locus_id=Os12g0265201;Note=Conserved hypothetical protein.;Transcript_evidence=AK288336 (DDBJ%2C Best hit);ORF_evidence=B9FQZ7 (UniProt);NIAS_FLcDNA=J090023A18;TENOR=Os12t0265201-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	9430185	9433003	.	-	.	Parent=Os12t0265201-01
Chr12	irgsp1_rep	CDS	9429951	9430184	.	-	0	Parent=Os12t0265201-01
Chr12	irgsp1_rep	three_prime_UTR	9429281	9429950	.	-	.	Parent=Os12t0265201-01
Chr12	irgsp1_rep	mRNA	9435934	9438197	.	-	.	ID=Os12t0265400-00;Name=Os12t0265400-00;Locus_id=Os12g0265400;Note=Glycosyl transferase%2C family 31 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QUE9 (UniProt);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Glycosyl transferase%2C family 31 (IPR002659);TENOR=Os12t0265400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	9437961	9438197	.	-	0	Parent=Os12t0265400-00
Chr12	irgsp1_rep	CDS	9437476	9437649	.	-	0	Parent=Os12t0265400-00
Chr12	irgsp1_rep	CDS	9436538	9436665	.	-	0	Parent=Os12t0265400-00
Chr12	irgsp1_rep	CDS	9435934	9436114	.	-	1	Parent=Os12t0265400-00
Chr12	irgsp1_rep	mRNA	9441386	9442194	.	-	.	ID=Os12t0265600-01;Name=Os12t0265600-01;Locus_id=Os12g0265600;Note=Conserved hypothetical protein.;Transcript_evidence=AK111044 (DDBJ%2C Best hit);ORF_evidence=B9FN94 (UniProt);NIAS_FLcDNA=002-175-B10;TENOR=Os12t0265600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	9441993	9442194	.	-	.	Parent=Os12t0265600-01
Chr12	irgsp1_rep	CDS	9441717	9441992	.	-	0	Parent=Os12t0265600-01
Chr12	irgsp1_rep	three_prime_UTR	9441386	9441716	.	-	.	Parent=Os12t0265600-01
Chr12	irgsp1_rep	mRNA	9444242	9453006	.	+	.	ID=Os12t0265701-00;Name=Os12t0265701-00;Locus_id=Os12g0265701;Note=Hypothetical conserved gene.;Transcript_evidence=CT835617 (DDBJ%2C Best hit);ORF_evidence=B8AZG3 (UniProt);TENOR=Os12t0265701-00;KEGG=Os12t0265701-00
Chr12	irgsp1_rep	five_prime_UTR	9444242	9444369	.	+	.	Parent=Os12t0265701-00
Chr12	irgsp1_rep	CDS	9444370	9444682	.	+	0	Parent=Os12t0265701-00
Chr12	irgsp1_rep	CDS	9452649	9452746	.	+	2	Parent=Os12t0265701-00
Chr12	irgsp1_rep	three_prime_UTR	9452747	9453006	.	+	.	Parent=Os12t0265701-00
Chr12	irgsp1_rep	mRNA	9453794	9454286	.	+	.	ID=Os12t0265800-01;Name=Os12t0265800-01;Locus_id=Os12g0265800;Note=Hypothetical conserved gene.;Transcript_evidence=AK108847 (DDBJ%2C Best hit);ORF_evidence=B9FN97 (UniProt);NIAS_FLcDNA=002-152-A03;Expression=AK108847;TENOR=Os12t0265800-01;KEGG=Os12t0265800-01
Chr12	irgsp1_rep	five_prime_UTR	9453794	9453853	.	+	.	Parent=Os12t0265800-01
Chr12	irgsp1_rep	CDS	9453854	9454033	.	+	0	Parent=Os12t0265800-01
Chr12	irgsp1_rep	three_prime_UTR	9454034	9454286	.	+	.	Parent=Os12t0265800-01
Chr12	irgsp1_rep	mRNA	9466296	9468227	.	+	.	ID=Os12t0266000-01;Name=Os12t0266000-01;Locus_id=Os12g0266000;Note=Similar to Glutaredoxin-C8.;Transcript_evidence=AK068783 (DDBJ%2C Best hit);ORF_evidence=Q0DAE4 (UniProt);NIAS_FLcDNA=J013158O18;Oryzabase=20479;Expression=AK068783;TENOR=Os12t0266000-01;KEGG=Os12t0266000-01
Chr12	irgsp1_rep	CDS	9466296	9466739	.	+	0	Parent=Os12t0266000-01
Chr12	irgsp1_rep	three_prime_UTR	9466740	9468227	.	+	.	Parent=Os12t0266000-01
Chr12	irgsp1_rep	mRNA	9466728	9467076	.	+	.	ID=Os12t0266000-02;Name=Os12t0266000-02;Locus_id=Os12g0266000;Note=Non-protein coding transcript.;Transcript_evidence=AK058357 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-014-F01;Oryzabase=20479;TENOR=Os12t0266000-02
Chr12	irgsp1_rep	exon	9466728	9467076	.	+	.	Parent=Os12t0266000-02
Chr12	irgsp1_rep	mRNA	9466783	9468196	.	+	.	ID=Os12t0266000-03;Name=Os12t0266000-03;Locus_id=Os12g0266000;Note=Hypothetical gene.;Transcript_evidence=AK102501 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033095C06;Oryzabase=20479;Expression=AK102501;TENOR=Os12t0266000-03;KEGG=Os12t0266000-03
Chr12	irgsp1_rep	CDS	9466783	9467034	.	+	0	Parent=Os12t0266000-03
Chr12	irgsp1_rep	three_prime_UTR	9467035	9468196	.	+	.	Parent=Os12t0266000-03
Chr12	irgsp1_rep	mRNA	9476374	9478760	.	-	.	ID=Os12t0266200-01;Name=Os12t0266200-01;Locus_id=Os12g0266200;CGSNL Gene Symbol=WAK124;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 124;Oryzabase Gene Symbol Synonym(s)=OsWAK124;Note=Similar to Fibrillin-2 precursor.;Transcript_evidence=AK066290 (DDBJ%2C Best hit);ORF_evidence=B9FN96 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515);InterPro=EGF-type aspartate/asparagine hydroxylation site (IPR000152),Epidermal growth factor-like%2C type 3 (IPR000742),EGF-like calcium-binding (IPR001881),Epidermal growth factor-like (IPR006210),EGF-like calcium-binding%2C conserved site (IPR018097);NIAS_FLcDNA=J013066I06;Oryzabase=8039;Expression=AK066290;TENOR=Os12t0266200-01;KEGG=Os12t0266200-01
Chr12	irgsp1_rep	five_prime_UTR	9478701	9478760	.	-	.	Parent=Os12t0266200-01
Chr12	irgsp1_rep	CDS	9477728	9478700	.	-	0	Parent=Os12t0266200-01
Chr12	irgsp1_rep	CDS	9476965	9477099	.	-	2	Parent=Os12t0266200-01
Chr12	irgsp1_rep	CDS	9476452	9476630	.	-	2	Parent=Os12t0266200-01
Chr12	irgsp1_rep	three_prime_UTR	9476374	9476451	.	-	.	Parent=Os12t0266200-01
Chr12	irgsp1_rep	mRNA	9477894	9478896	.	+	.	ID=Os12t0266401-01;Name=Os12t0266401-01;Locus_id=Os12g0266401;Note=Conserved hypothetical protein.;Transcript_evidence=AK241377 (DDBJ%2C Best hit);ORF_evidence=NP_001176887.1 (RefSeq);NIAS_FLcDNA=J065155H01;TENOR=Os12t0266401-01;KEGG=Os12t0266401-01
Chr12	irgsp1_rep	five_prime_UTR	9477894	9478095	.	+	.	Parent=Os12t0266401-01
Chr12	irgsp1_rep	CDS	9478096	9478413	.	+	0	Parent=Os12t0266401-01
Chr12	irgsp1_rep	three_prime_UTR	9478414	9478896	.	+	.	Parent=Os12t0266401-01
Chr12	irgsp1_rep	mRNA	9515224	9517532	.	-	.	ID=Os12t0267064-01;Name=Os12t0267064-01;Locus_id=Os12g0267064;Note=Similar to NADP-dependant malate dehydrogenase (Fragment).;Transcript_evidence=AK242533 (DDBJ%2C Best hit);ORF_evidence=Q8H0N9 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J080316C17;TENOR=Os12t0267064-01;KEGG=Os12t0267064-01
Chr12	irgsp1_rep	five_prime_UTR	9517094	9517532	.	-	.	Parent=Os12t0267064-01
Chr12	irgsp1_rep	five_prime_UTR	9516855	9516981	.	-	.	Parent=Os12t0267064-01
Chr12	irgsp1_rep	five_prime_UTR	9516621	9516736	.	-	.	Parent=Os12t0267064-01
Chr12	irgsp1_rep	five_prime_UTR	9516135	9516535	.	-	.	Parent=Os12t0267064-01
Chr12	irgsp1_rep	five_prime_UTR	9515690	9515728	.	-	.	Parent=Os12t0267064-01
Chr12	irgsp1_rep	CDS	9515524	9515689	.	-	0	Parent=Os12t0267064-01
Chr12	irgsp1_rep	CDS	9515439	9515452	.	-	2	Parent=Os12t0267064-01
Chr12	irgsp1_rep	three_prime_UTR	9515224	9515438	.	-	.	Parent=Os12t0267064-01
Chr12	irgsp1_rep	mRNA	9529034	9529520	.	+	.	ID=Os12t0267100-00;Name=Os12t0267100-00;Locus_id=Os12g0267100;Note=Similar to cyclopropane fatty acid synthase.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001147782.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FAD dependent oxidoreductase (IPR006076);TENOR=Os12t0267100-00
Chr12	irgsp1_rep	CDS	9529034	9529237	.	+	0	Parent=Os12t0267100-00
Chr12	irgsp1_rep	CDS	9529383	9529520	.	+	0	Parent=Os12t0267100-00
Chr12	irgsp1_rep	mRNA	9531874	9540793	.	+	.	ID=Os12t0267200-01;Name=Os12t0267200-01;Locus_id=Os12g0267200;Note=Cyclopropane-fatty-acyl-phospholipid synthase domain containing protein.;Transcript_evidence=AK069115 (DDBJ%2C Best hit);ORF_evidence=NP_001147782.1 (RefSeq);GO=Biological Process: lipid biosynthetic process (GO:0008610);InterPro=Mycolic acid cyclopropane synthase (IPR003333);NIAS_FLcDNA=J023008H02;Expression=AK069115;TENOR=Os12t0267200-01;KEGG=Os12t0267200-01
Chr12	irgsp1_rep	five_prime_UTR	9531874	9532027	.	+	.	Parent=Os12t0267200-01
Chr12	irgsp1_rep	CDS	9532028	9532141	.	+	0	Parent=Os12t0267200-01
Chr12	irgsp1_rep	CDS	9533642	9533865	.	+	0	Parent=Os12t0267200-01
Chr12	irgsp1_rep	CDS	9534023	9534128	.	+	1	Parent=Os12t0267200-01
Chr12	irgsp1_rep	CDS	9534282	9534383	.	+	0	Parent=Os12t0267200-01
Chr12	irgsp1_rep	CDS	9534496	9534555	.	+	0	Parent=Os12t0267200-01
Chr12	irgsp1_rep	CDS	9534700	9534778	.	+	0	Parent=Os12t0267200-01
Chr12	irgsp1_rep	CDS	9534918	9535065	.	+	2	Parent=Os12t0267200-01
Chr12	irgsp1_rep	CDS	9536642	9536765	.	+	1	Parent=Os12t0267200-01
Chr12	irgsp1_rep	CDS	9536891	9537068	.	+	0	Parent=Os12t0267200-01
Chr12	irgsp1_rep	CDS	9537247	9537275	.	+	2	Parent=Os12t0267200-01
Chr12	irgsp1_rep	CDS	9537371	9537519	.	+	0	Parent=Os12t0267200-01
Chr12	irgsp1_rep	CDS	9537635	9537737	.	+	1	Parent=Os12t0267200-01
Chr12	irgsp1_rep	CDS	9537825	9537920	.	+	0	Parent=Os12t0267200-01
Chr12	irgsp1_rep	CDS	9538026	9538081	.	+	0	Parent=Os12t0267200-01
Chr12	irgsp1_rep	CDS	9538192	9538315	.	+	1	Parent=Os12t0267200-01
Chr12	irgsp1_rep	CDS	9538530	9538592	.	+	0	Parent=Os12t0267200-01
Chr12	irgsp1_rep	CDS	9538690	9538749	.	+	0	Parent=Os12t0267200-01
Chr12	irgsp1_rep	CDS	9538925	9539086	.	+	0	Parent=Os12t0267200-01
Chr12	irgsp1_rep	CDS	9539245	9539315	.	+	0	Parent=Os12t0267200-01
Chr12	irgsp1_rep	CDS	9539483	9539576	.	+	1	Parent=Os12t0267200-01
Chr12	irgsp1_rep	CDS	9539658	9539794	.	+	0	Parent=Os12t0267200-01
Chr12	irgsp1_rep	CDS	9539898	9539978	.	+	1	Parent=Os12t0267200-01
Chr12	irgsp1_rep	CDS	9540385	9540487	.	+	1	Parent=Os12t0267200-01
Chr12	irgsp1_rep	CDS	9540565	9540615	.	+	0	Parent=Os12t0267200-01
Chr12	irgsp1_rep	three_prime_UTR	9540616	9540793	.	+	.	Parent=Os12t0267200-01
Chr12	irgsp1_rep	mRNA	9546322	9547871	.	-	.	ID=Os12t0267400-01;Name=Os12t0267400-01;Locus_id=Os12g0267400;Note=Hypothetical protein.;Transcript_evidence=AK071825 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023115H13;Expression=AK071825;TENOR=Os12t0267400-01;KEGG=Os12t0267400-01
Chr12	irgsp1_rep	five_prime_UTR	9547642	9547871	.	-	.	Parent=Os12t0267400-01
Chr12	irgsp1_rep	CDS	9546907	9547641	.	-	0	Parent=Os12t0267400-01
Chr12	irgsp1_rep	three_prime_UTR	9546322	9546906	.	-	.	Parent=Os12t0267400-01
Chr12	irgsp1_rep	mRNA	9546903	9548489	.	+	.	ID=Os12t0267500-01;Name=Os12t0267500-01;Locus_id=Os12g0267500;Note=Conserved hypothetical protein.;Transcript_evidence=AK065740 (DDBJ%2C Best hit);ORF_evidence=B8AZG5 (UniProt);NIAS_FLcDNA=J013042N04;Expression=AK065740;TENOR=Os12t0267500-01;KEGG=Os12t0267500-01
Chr12	irgsp1_rep	five_prime_UTR	9546903	9547246	.	+	.	Parent=Os12t0267500-01
Chr12	irgsp1_rep	CDS	9547247	9547678	.	+	0	Parent=Os12t0267500-01
Chr12	irgsp1_rep	three_prime_UTR	9547679	9548489	.	+	.	Parent=Os12t0267500-01
Chr12	irgsp1_rep	mRNA	9555206	9558162	.	+	.	ID=Os12t0267700-01;Name=Os12t0267700-01;Locus_id=Os12g0267700;Note=Hypothetical conserved gene.;Transcript_evidence=AK242266 (DDBJ%2C Best hit);ORF_evidence=Q2QUC9 (UniProt);NIAS_FLcDNA=J075185P03;TENOR=Os12t0267700-01;KEGG=Os12t0267700-01
Chr12	irgsp1_rep	five_prime_UTR	9555206	9555722	.	+	.	Parent=Os12t0267700-01
Chr12	irgsp1_rep	CDS	9555723	9555799	.	+	0	Parent=Os12t0267700-01
Chr12	irgsp1_rep	CDS	9555931	9555997	.	+	1	Parent=Os12t0267700-01
Chr12	irgsp1_rep	CDS	9556247	9556306	.	+	0	Parent=Os12t0267700-01
Chr12	irgsp1_rep	three_prime_UTR	9556307	9556387	.	+	.	Parent=Os12t0267700-01
Chr12	irgsp1_rep	three_prime_UTR	9556541	9556573	.	+	.	Parent=Os12t0267700-01
Chr12	irgsp1_rep	three_prime_UTR	9556659	9556712	.	+	.	Parent=Os12t0267700-01
Chr12	irgsp1_rep	three_prime_UTR	9556811	9556913	.	+	.	Parent=Os12t0267700-01
Chr12	irgsp1_rep	three_prime_UTR	9557074	9557202	.	+	.	Parent=Os12t0267700-01
Chr12	irgsp1_rep	three_prime_UTR	9557864	9558162	.	+	.	Parent=Os12t0267700-01
Chr12	irgsp1_rep	mRNA	9565766	9567140	.	-	.	ID=Os12t0267800-01;Name=Os12t0267800-01;Locus_id=Os12g0267800;Note=Similar to multidrug/pheromone exporter%2C MDR family%2C ABC transporter family.;Transcript_evidence=AK241614 (DDBJ%2C Best hit);ORF_evidence=XP_002331205.1 (RefSeq);NIAS_FLcDNA=J065186C24;TENOR=Os12t0267800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	9566397	9567140	.	-	.	Parent=Os12t0267800-01
Chr12	irgsp1_rep	CDS	9566184	9566396	.	-	0	Parent=Os12t0267800-01
Chr12	irgsp1_rep	three_prime_UTR	9565766	9566183	.	-	.	Parent=Os12t0267800-01
Chr12	irgsp1_rep	mRNA	9565932	9570984	.	+	.	ID=Os12t0267900-01;Name=Os12t0267900-01;Locus_id=Os12g0267900;Oryzabase Gene Symbol Synonym(s)=OsRFP;Oryzabase Gene Name Synonym(s)=RING finger protein;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK072042 (DDBJ%2C Best hit);ORF_evidence=B4F7X0 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J013104I23;Oryzabase=21172;Expression=AK072042;TENOR=Os12t0267900-01;KEGG=Os12t0267900-01
Chr12	irgsp1_rep	five_prime_UTR	9565932	9567712	.	+	.	Parent=Os12t0267900-01
Chr12	irgsp1_rep	CDS	9567713	9567981	.	+	0	Parent=Os12t0267900-01
Chr12	irgsp1_rep	CDS	9568079	9568170	.	+	1	Parent=Os12t0267900-01
Chr12	irgsp1_rep	CDS	9568277	9568410	.	+	2	Parent=Os12t0267900-01
Chr12	irgsp1_rep	CDS	9568525	9568574	.	+	0	Parent=Os12t0267900-01
Chr12	irgsp1_rep	CDS	9570009	9570083	.	+	1	Parent=Os12t0267900-01
Chr12	irgsp1_rep	CDS	9570162	9570717	.	+	1	Parent=Os12t0267900-01
Chr12	irgsp1_rep	three_prime_UTR	9570718	9570984	.	+	.	Parent=Os12t0267900-01
Chr12	irgsp1_rep	mRNA	9573361	9573420	.	+	.	ID=Os12t0267950-00;Name=Os12t0267950-00;Locus_id=Os12g0267950;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0267950-00
Chr12	irgsp1_rep	exon	9573361	9573420	.	+	.	Parent=Os12t0267950-00
Chr12	irgsp1_rep	mRNA	9579773	9581772	.	-	.	ID=Os12t0268000-01;Name=Os12t0268000-01;Locus_id=Os12g0268000;RAP-DB Gene Symbol Synonym(s)=SL%2C OsSL%2C CYP71P1%2C LLM1%2C CYP71A1%2C T5H;RAP-DB Gene Name Synonym(s)=Sekiguchi lesion%2C CytoChrome P450 71P1%2C large lesion mimic 1%2C tryptamine 5-hydroxylase;CGSNL Gene Symbol=SL;CGSNL Gene Name=SEKIGUCHI LESION;Oryzabase Gene Symbol Synonym(s)=OsSL%2C sl (spl1)%2C sl*%2C sl%2C spl1%2C CYP71P1%2C Os CYP71P1%2C T5H%2C OsT5H%2C CYP71A1%2C OsCYP71A1%2C OsLLM1%2C LLM1%2C LLM1/OsSL;Oryzabase Gene Name Synonym(s)=Sekiguchi lesion%2C CytoChrome P450 71P1%2C tryptamine 5-hydroxylase%2C large lesion mimic 1;Note=CytoChrome P450 monooxygenase%2C Tryptamine 5-hydroxylase%2C Regulation of cell death and disease resistance;Transcript_evidence=AK071599;ORF_evidence=Q2QUC5;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 superfamily (IPR036396),CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J023107I12;Manual Curation=January 24%2C 2019;Literature_PMID=30582769,29735983,20150424;Oryzabase=2096;Expression=AK071599;TENOR=Os12t0268000-01;KEGG=Os12t0268000-01 (EC 1.14.-.-);Subcellular location=endoplasmic reticulum (GO:0005783)
Chr12	irgsp1_rep	five_prime_UTR	9581702	9581772	.	-	.	Parent=Os12t0268000-01
Chr12	irgsp1_rep	CDS	9580787	9581701	.	-	0	Parent=Os12t0268000-01
Chr12	irgsp1_rep	CDS	9580034	9580690	.	-	0	Parent=Os12t0268000-01
Chr12	irgsp1_rep	three_prime_UTR	9579773	9580033	.	-	.	Parent=Os12t0268000-01
Chr12	irgsp1_rep	mRNA	9580088	9582014	.	+	.	ID=Os12t0268100-01;Name=Os12t0268100-01;Locus_id=Os12g0268100;Note=Hypothetical protein.;Transcript_evidence=AK121788 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J033094F11;Expression=AK121788;TENOR=Os12t0268100-01;KEGG=Os12t0268100-01
Chr12	irgsp1_rep	five_prime_UTR	9580088	9580892	.	+	.	Parent=Os12t0268100-01
Chr12	irgsp1_rep	CDS	9580893	9581744	.	+	0	Parent=Os12t0268100-01
Chr12	irgsp1_rep	three_prime_UTR	9581745	9582014	.	+	.	Parent=Os12t0268100-01
Chr12	irgsp1_rep	mRNA	9686915	9687610	.	+	.	ID=Os12t0269100-01;Name=Os12t0269100-01;Locus_id=Os12g0269100;Oryzabase Gene Symbol Synonym(s)=Prol-24%2C pro13a.3;Note=Similar to Prolamin.;Transcript_evidence=AK242177 (DDBJ%2C Best hit);ORF_evidence=A1YQF9 (UniProt);GO=Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Gliadin/LMW glutenin (IPR001954),Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Bifunctional trypsin/alpha-amylase inhibitor (IPR013771),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=J075160B15;Oryzabase=15154;TENOR=Os12t0269100-01;KEGG=Os12t0269100-01
Chr12	irgsp1_rep	five_prime_UTR	9686915	9686971	.	+	.	Parent=Os12t0269100-01
Chr12	irgsp1_rep	CDS	9686972	9687442	.	+	0	Parent=Os12t0269100-01
Chr12	irgsp1_rep	three_prime_UTR	9687443	9687610	.	+	.	Parent=Os12t0269100-01
Chr12	irgsp1_rep	mRNA	9688988	9689683	.	+	.	ID=Os12t0269200-01;Name=Os12t0269200-01;Locus_id=Os12g0269200;Oryzabase Gene Symbol Synonym(s)=Prol-25%2C Prol-28%2C Prol-29%2C Prol-30%2C pro13a.4%2C PROLM28;Oryzabase Gene Name Synonym(s)=Prolamin 28;Note=Similar to Prolamin precursor.;Transcript_evidence=AK242325 (DDBJ%2C Best hit);ORF_evidence=D6BV11 (UniProt);GO=Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Gliadin/LMW glutenin (IPR001954),Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Bifunctional trypsin/alpha-amylase inhibitor (IPR013771),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=J075197J21;Oryzabase=15155;TENOR=Os12t0269200-01;KEGG=Os12t0269200-01
Chr12	irgsp1_rep	five_prime_UTR	9688988	9689044	.	+	.	Parent=Os12t0269200-01
Chr12	irgsp1_rep	CDS	9689045	9689515	.	+	0	Parent=Os12t0269200-01
Chr12	irgsp1_rep	three_prime_UTR	9689516	9689683	.	+	.	Parent=Os12t0269200-01
Chr12	irgsp1_rep	mRNA	9730470	9734234	.	+	.	ID=Os12t0269600-00;Name=Os12t0269600-00;Locus_id=Os12g0269600;Oryzabase Gene Symbol Synonym(s)=pro13a.5;Note=Similar to Prolamin.;Transcript_evidence=EF122452 (DDBJ%2C Best hit);ORF_evidence=A1YQF8 (UniProt);GO=Molecular Function: nutrient reservoir activity (GO:0045735);InterPro=Gliadin/LMW glutenin (IPR001954),Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Bifunctional trypsin/alpha-amylase inhibitor (IPR013771),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);Oryzabase=19805;TENOR=Os12t0269600-00;KEGG=Os12t0269600-00
Chr12	irgsp1_rep	five_prime_UTR	9730470	9730501	.	+	.	Parent=Os12t0269600-00
Chr12	irgsp1_rep	CDS	9730502	9730621	.	+	0	Parent=Os12t0269600-00
Chr12	irgsp1_rep	CDS	9733761	9734123	.	+	0	Parent=Os12t0269600-00
Chr12	irgsp1_rep	three_prime_UTR	9734124	9734234	.	+	.	Parent=Os12t0269600-00
Chr12	irgsp1_rep	mRNA	9740710	9741352	.	+	.	ID=Os12t0269700-01;Name=Os12t0269700-01;Locus_id=Os12g0269700;Oryzabase Gene Symbol Synonym(s)=Prol-26%2C pro13a.6;Note=Similar to 13 kDa prolamin precursor.;Transcript_evidence=AK242151 (DDBJ%2C Best hit);ORF_evidence=A1YQF9 (UniProt);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Bifunctional trypsin/alpha-amylase inhibitor (IPR013771),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);NIAS_FLcDNA=J075153J11;Oryzabase=15156;TENOR=Os12t0269700-01;KEGG=Os12t0269700-01
Chr12	irgsp1_rep	five_prime_UTR	9740710	9741000	.	+	.	Parent=Os12t0269700-01
Chr12	irgsp1_rep	CDS	9741001	9741237	.	+	0	Parent=Os12t0269700-01
Chr12	irgsp1_rep	three_prime_UTR	9741238	9741352	.	+	.	Parent=Os12t0269700-01
Chr12	irgsp1_rep	mRNA	9768625	9772329	.	-	.	ID=Os12t0270100-01;Name=Os12t0270100-01;Locus_id=Os12g0270100;Note=Similar to Oxygen-independent coproporphyrinogen-like protein.;Transcript_evidence=AK068573 (DDBJ%2C Best hit);ORF_evidence=NP_001152192.1 (RefSeq);GO=Biological Process: porphyrin-containing compound biosynthetic process (GO:0006779),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: cytoplasm (GO:0005737),Molecular Function: catalytic activity (GO:0003824),Molecular Function: coproporphyrinogen oxidase activity (GO:0004109),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=Coproporphyrinogen III oxidase%2C oxygen-independent related (IPR004559),Elongator protein 3/MiaB/NifB (IPR006638),Radical SAM (IPR007197),HemN%2C C-terminal (IPR010723),Radical SAM%2C alpha/beta horseshoe (IPR023404);NIAS_FLcDNA=J013155L16;Expression=AK068573;TENOR=Os12t0270100-01;KEGG=Os12t0270100-01 (EC:1.3.99.22)
Chr12	irgsp1_rep	five_prime_UTR	9772308	9772329	.	-	.	Parent=Os12t0270100-01
Chr12	irgsp1_rep	CDS	9771529	9772307	.	-	0	Parent=Os12t0270100-01
Chr12	irgsp1_rep	CDS	9768841	9769465	.	-	1	Parent=Os12t0270100-01
Chr12	irgsp1_rep	three_prime_UTR	9768625	9768840	.	-	.	Parent=Os12t0270100-01
Chr12	irgsp1_rep	mRNA	9766670	9769299	.	-	.	ID=Os12t0270100-02;Name=Os12t0270100-02;Locus_id=Os12g0270100;Note=Similar to oxygen-independent coproporphyrinogen III oxidase-like protein sll1917.;Transcript_evidence=AK066873 (DDBJ%2C Best hit);ORF_evidence=NP_001152192.1 (RefSeq);GO=Biological Process: porphyrin-containing compound biosynthetic process (GO:0006779),Biological Process: oxidation-reduction process (GO:0055114),Cellular Component: cytoplasm (GO:0005737),Molecular Function: coproporphyrinogen oxidase activity (GO:0004109);InterPro=HemN%2C C-terminal (IPR010723);NIAS_FLcDNA=J013079B12;TENOR=Os12t0270100-02;KEGG=Os12t0270100-02 (EC:1.3.99.22)
Chr12	irgsp1_rep	CDS	9768841	9769299	.	-	0	Parent=Os12t0270100-02
Chr12	irgsp1_rep	three_prime_UTR	9766670	9768840	.	-	.	Parent=Os12t0270100-02
Chr12	irgsp1_rep	mRNA	9777776	9782458	.	+	.	ID=Os12t0270200-01;Name=Os12t0270200-01;Locus_id=Os12g0270200;RAP-DB Gene Symbol Synonym(s)=OGR1%2C ogr1;RAP-DB Gene Name Synonym(s)=OPAQUE AND GROWTH RETARDATION 1%2C opaque and growth retardation 1;CGSNL Gene Symbol=OGR1;CGSNL Gene Name=OPAQUE AND GROWTH RETARDATION 1;Oryzabase Gene Symbol Synonym(s)=ogr1;Oryzabase Gene Name Synonym(s)=opaque and growth retardation 1;Note=Pentatricopeptide repeat-DYW protein%2C RNA editing in mitochondria;Transcript_evidence=AK242649 (Genbank);ORF_evidence=B8YEK4 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=J090025M16;Manual Curation=September 1%2C 2009;Literature_PMID=19453459;Oryzabase=8774;TENOR=Os12t0270200-01;KEGG=Os12t0270200-01
Chr12	irgsp1_rep	five_prime_UTR	9777776	9777832	.	+	.	Parent=Os12t0270200-01
Chr12	irgsp1_rep	CDS	9777833	9779596	.	+	0	Parent=Os12t0270200-01
Chr12	irgsp1_rep	three_prime_UTR	9779597	9780213	.	+	.	Parent=Os12t0270200-01
Chr12	irgsp1_rep	three_prime_UTR	9780608	9780745	.	+	.	Parent=Os12t0270200-01
Chr12	irgsp1_rep	three_prime_UTR	9781140	9781569	.	+	.	Parent=Os12t0270200-01
Chr12	irgsp1_rep	three_prime_UTR	9782224	9782458	.	+	.	Parent=Os12t0270200-01
Chr12	irgsp1_rep	mRNA	9782561	9786758	.	-	.	ID=Os12t0270300-01;Name=Os12t0270300-01;Locus_id=Os12g0270300;Note=NB-ARC domain containing protein.;Transcript_evidence=AK070311 (DDBJ%2C Best hit);ORF_evidence=B9FJ98 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J023048O04;Expression=AK070311;TENOR=Os12t0270300-01;KEGG=Os12t0270300-01
Chr12	irgsp1_rep	five_prime_UTR	9786547	9786758	.	-	.	Parent=Os12t0270300-01
Chr12	irgsp1_rep	five_prime_UTR	9786415	9786428	.	-	.	Parent=Os12t0270300-01
Chr12	irgsp1_rep	CDS	9785612	9786414	.	-	0	Parent=Os12t0270300-01
Chr12	irgsp1_rep	CDS	9783200	9785096	.	-	1	Parent=Os12t0270300-01
Chr12	irgsp1_rep	three_prime_UTR	9783018	9783199	.	-	.	Parent=Os12t0270300-01
Chr12	irgsp1_rep	three_prime_UTR	9782561	9782906	.	-	.	Parent=Os12t0270300-01
Chr12	irgsp1_rep	mRNA	9782834	9786187	.	-	.	ID=Os12t0270300-02;Name=Os12t0270300-02;Locus_id=Os12g0270300;Note=Hypothetical conserved gene.;Transcript_evidence=AK103036 (DDBJ%2C Best hit);ORF_evidence=B9FJ98 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J033117D17;Expression=AK103036;TENOR=Os12t0270300-02;KEGG=Os12t0270300-02
Chr12	irgsp1_rep	five_prime_UTR	9786187	9786187	.	-	.	Parent=Os12t0270300-02
Chr12	irgsp1_rep	CDS	9785612	9786186	.	-	0	Parent=Os12t0270300-02
Chr12	irgsp1_rep	CDS	9783200	9785096	.	-	1	Parent=Os12t0270300-02
Chr12	irgsp1_rep	three_prime_UTR	9783018	9783199	.	-	.	Parent=Os12t0270300-02
Chr12	irgsp1_rep	three_prime_UTR	9782834	9782906	.	-	.	Parent=Os12t0270300-02
Chr12	irgsp1_rep	mRNA	9821581	9823929	.	-	.	ID=Os12t0270900-01;Name=Os12t0270900-01;Locus_id=Os12g0270900;Oryzabase Gene Name Synonym(s)=Sulfotransferase family protein;Note=Sulfotransferase family protein.;Transcript_evidence=AK071840 (DDBJ%2C Best hit);ORF_evidence=Q2QU81 (UniProt);GO=Molecular Function: sulfotransferase activity (GO:0008146);InterPro=Sulfotransferase domain (IPR000863);NIAS_FLcDNA=J023121F12;Oryzabase=20465;Expression=AK071840;TENOR=Os12t0270900-01;KEGG=Os12t0270900-01
Chr12	irgsp1_rep	CDS	9823664	9823929	.	-	0	Parent=Os12t0270900-01
Chr12	irgsp1_rep	CDS	9823399	9823590	.	-	1	Parent=Os12t0270900-01
Chr12	irgsp1_rep	CDS	9822463	9822955	.	-	1	Parent=Os12t0270900-01
Chr12	irgsp1_rep	three_prime_UTR	9821581	9822462	.	-	.	Parent=Os12t0270900-01
Chr12	irgsp1_rep	mRNA	9822280	9823929	.	-	.	ID=Os12t0270900-02;Name=Os12t0270900-02;Locus_id=Os12g0270900;Oryzabase Gene Name Synonym(s)=Sulfotransferase family protein;Note=Similar to cDNA clone:J023121F12%2C full insert sequence.;Transcript_evidence=AK070224 (DDBJ%2C Best hit);ORF_evidence=B7EK25 (UniProt);GO=Molecular Function: sulfotransferase activity (GO:0008146);InterPro=Sulfotransferase domain (IPR000863);NIAS_FLcDNA=J023042G18;Oryzabase=20465;Expression=AK070224;TENOR=Os12t0270900-02;KEGG=Os12t0270900-02
Chr12	irgsp1_rep	five_prime_UTR	9823923	9823929	.	-	.	Parent=Os12t0270900-02
Chr12	irgsp1_rep	CDS	9823399	9823922	.	-	0	Parent=Os12t0270900-02
Chr12	irgsp1_rep	CDS	9822463	9822955	.	-	1	Parent=Os12t0270900-02
Chr12	irgsp1_rep	three_prime_UTR	9822280	9822462	.	-	.	Parent=Os12t0270900-02
Chr12	irgsp1_rep	mRNA	9907483	9914893	.	+	.	ID=Os12t0271600-01;Name=Os12t0271600-01;Locus_id=Os12g0271600;Oryzabase Gene Symbol Synonym(s)=BIP134%2C OsBIP134;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 134%2C BRI1-interacting protein 134%2C brassinosteroid receptor kinase-interacting protein 134;Note=Similar to Myosin heavy chain-like.;Transcript_evidence=AK070395 (DDBJ%2C Best hit);ORF_evidence=B8AZL7 (UniProt);InterPro=Protein of unknown function DUF827%2C plant (IPR008545);NIAS_FLcDNA=J023050F09;Oryzabase=13706;Expression=AK070395;TENOR=Os12t0271600-01;KEGG=Os12t0271600-01
Chr12	irgsp1_rep	five_prime_UTR	9907483	9907688	.	+	.	Parent=Os12t0271600-01
Chr12	irgsp1_rep	five_prime_UTR	9908953	9908982	.	+	.	Parent=Os12t0271600-01
Chr12	irgsp1_rep	CDS	9908983	9909153	.	+	0	Parent=Os12t0271600-01
Chr12	irgsp1_rep	CDS	9912947	9914719	.	+	0	Parent=Os12t0271600-01
Chr12	irgsp1_rep	three_prime_UTR	9914720	9914893	.	+	.	Parent=Os12t0271600-01
Chr12	irgsp1_rep	mRNA	9913334	9914965	.	+	.	ID=Os12t0271600-02;Name=Os12t0271600-02;Locus_id=Os12g0271600;Oryzabase Gene Symbol Synonym(s)=BIP134%2C OsBIP134;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 134%2C BRI1-interacting protein 134%2C brassinosteroid receptor kinase-interacting protein 134;Note=Hypothetical conserved gene.;Transcript_evidence=AK102333 (DDBJ%2C Best hit);ORF_evidence=B8AZL7 (UniProt);InterPro=Protein of unknown function DUF827%2C plant (IPR008545);NIAS_FLcDNA=J033090P09;Oryzabase=13706;Expression=AK102333;TENOR=Os12t0271600-02;KEGG=Os12t0271600-02
Chr12	irgsp1_rep	CDS	9913334	9914719	.	+	0	Parent=Os12t0271600-02
Chr12	irgsp1_rep	three_prime_UTR	9914720	9914965	.	+	.	Parent=Os12t0271600-02
Chr12	irgsp1_rep	mRNA	9921771	9922691	.	-	.	ID=Os12t0271700-01;Name=Os12t0271700-01;Locus_id=Os12g0271700;Oryzabase Gene Symbol Synonym(s)=OsSPS3%2C SPS3;Oryzabase Gene Name Synonym(s)=solanesyl diphosphate synthase 3;Note=Similar to prenyl transferase.;Transcript_evidence=AK111310 (DDBJ%2C Best hit);ORF_evidence=NP_001149100.1 (RefSeq);GO=Biological Process: photosynthesis (GO:0015979),Molecular Function: transferase activity%2C transferring alkyl or aryl (other than methyl) groups (GO:0016765);InterPro=Solanesyl diphosphate synthase (IPR014120),Polyprenyl synthetase-related (IPR017446);NIAS_FLcDNA=002-181-C02;Oryzabase=21786;Expression=AK111310;TENOR=Os12t0271700-01;KEGG=Os12t0271700-01 (EC:2.5.1.-)
Chr12	irgsp1_rep	five_prime_UTR	9922511	9922691	.	-	.	Parent=Os12t0271700-01
Chr12	irgsp1_rep	CDS	9922318	9922510	.	-	0	Parent=Os12t0271700-01
Chr12	irgsp1_rep	CDS	9922004	9922221	.	-	2	Parent=Os12t0271700-01
Chr12	irgsp1_rep	three_prime_UTR	9921771	9922003	.	-	.	Parent=Os12t0271700-01
Chr12	irgsp1_rep	mRNA	9915351	9922386	.	-	.	ID=Os12t0271700-02;Name=Os12t0271700-02;Locus_id=Os12g0271700;Oryzabase Gene Symbol Synonym(s)=OsSPS3%2C SPS3;Oryzabase Gene Name Synonym(s)=solanesyl diphosphate synthase 3;Note=Similar to Solanesyl diphosphate synthase 1.;Transcript_evidence=AK110824 (DDBJ%2C Best hit);ORF_evidence=NP_001149100.1 (RefSeq);GO=Biological Process: isoprenoid biosynthetic process (GO:0008299),Biological Process: photosynthesis (GO:0015979),Molecular Function: transferase activity%2C transferring alkyl or aryl (other than methyl) groups (GO:0016765);InterPro=Polyprenyl synthetase (IPR000092),Terpenoid synthase (IPR008949),Solanesyl diphosphate synthase (IPR014120),Polyprenyl synthetase-related (IPR017446);NIAS_FLcDNA=002-171-H05;Oryzabase=21786;Expression=AK110824;TENOR=Os12t0271700-02;KEGG=Os12t0271700-02 (EC:2.5.1.-)
Chr12	irgsp1_rep	five_prime_UTR	9922385	9922386	.	-	.	Parent=Os12t0271700-02
Chr12	irgsp1_rep	CDS	9922318	9922384	.	-	0	Parent=Os12t0271700-02
Chr12	irgsp1_rep	CDS	9922079	9922221	.	-	2	Parent=Os12t0271700-02
Chr12	irgsp1_rep	CDS	9920814	9920941	.	-	0	Parent=Os12t0271700-02
Chr12	irgsp1_rep	CDS	9916929	9917032	.	-	1	Parent=Os12t0271700-02
Chr12	irgsp1_rep	CDS	9916391	9916518	.	-	2	Parent=Os12t0271700-02
Chr12	irgsp1_rep	CDS	9915761	9916309	.	-	0	Parent=Os12t0271700-02
Chr12	irgsp1_rep	three_prime_UTR	9915351	9915760	.	-	.	Parent=Os12t0271700-02
Chr12	irgsp1_rep	mRNA	9915777	9916315	.	+	.	ID=Os12t0271751-00;Name=Os12t0271751-00;Locus_id=Os12g0271751;Note=Hypothetical protein.;Transcript_evidence=EU943742 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0271751-00
Chr12	irgsp1_rep	five_prime_UTR	9915777	9915959	.	+	.	Parent=Os12t0271751-00
Chr12	irgsp1_rep	CDS	9915960	9916217	.	+	0	Parent=Os12t0271751-00
Chr12	irgsp1_rep	three_prime_UTR	9916218	9916315	.	+	.	Parent=Os12t0271751-00
Chr12	irgsp1_rep	mRNA	9965589	9968026	.	-	.	ID=Os12t0272500-01;Name=Os12t0272500-01;Locus_id=Os12g0272500;Note=Non-protein coding transcript.;Transcript_evidence=AK120114 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013025H08;TENOR=Os12t0272500-01
Chr12	irgsp1_rep	exon	9967884	9968026	.	-	.	Parent=Os12t0272500-01
Chr12	irgsp1_rep	exon	9965589	9967781	.	-	.	Parent=Os12t0272500-01
Chr12	irgsp1_rep	mRNA	9980291	9984737	.	-	.	ID=Os12t0272800-01;Name=Os12t0272800-01;Locus_id=Os12g0272800;RAP-DB Gene Symbol Synonym(s)=NRTP1;RAP-DB Gene Name Synonym(s)=Necrotic root tip 1;CGSNL Gene Symbol=NRTP1;CGSNL Gene Name=NECROTIC ROOT TIP 1;Oryzabase Gene Symbol Synonym(s)=OsNRTP1;Oryzabase Gene Name Synonym(s)=Necrotic root tip 1;Note=Typical coiled-coil nucleotide binding leucine rich repeat (CC-NB-LRR) type protein%2C Defense response;Transcript_evidence=AK240667;ORF_evidence=B9FNB1;GO=Molecular Function: ADP binding (GO:0043531);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),Leucine-rich repeat domain superfamily (IPR032675),NB-ARC (IPR002182);NIAS_FLcDNA=J033060O18;Manual Curation=October 5%2C 2018;Literature_PMID=30284062;Oryzabase=22588;TENOR=Os12t0272800-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	9984318	9984737	.	-	.	Parent=Os12t0272800-01
Chr12	irgsp1_rep	CDS	9983845	9984317	.	-	0	Parent=Os12t0272800-01
Chr12	irgsp1_rep	CDS	9980554	9982525	.	-	1	Parent=Os12t0272800-01
Chr12	irgsp1_rep	three_prime_UTR	9980291	9980553	.	-	.	Parent=Os12t0272800-01
Chr12	irgsp1_rep	mRNA	10016692	10021620	.	-	.	ID=Os12t0273300-01;Name=Os12t0273300-01;Locus_id=Os12g0273300;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=AK065346 (DDBJ%2C Best hit);ORF_evidence=Q2QU48 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013005L22;TENOR=Os12t0273300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	10021610	10021620	.	-	.	Parent=Os12t0273300-01
Chr12	irgsp1_rep	CDS	10021504	10021609	.	-	0	Parent=Os12t0273300-01
Chr12	irgsp1_rep	CDS	10020513	10021188	.	-	2	Parent=Os12t0273300-01
Chr12	irgsp1_rep	CDS	10017184	10019161	.	-	1	Parent=Os12t0273300-01
Chr12	irgsp1_rep	three_prime_UTR	10017100	10017183	.	-	.	Parent=Os12t0273300-01
Chr12	irgsp1_rep	three_prime_UTR	10016692	10016939	.	-	.	Parent=Os12t0273300-01
Chr12	irgsp1_rep	mRNA	10049330	10053017	.	+	.	ID=Os12t0273700-01;Name=Os12t0273700-01;Locus_id=Os12g0273700;Note=Conserved hypothetical protein.;Transcript_evidence=AK071152 (DDBJ%2C Best hit);ORF_evidence=B9FNB6 (UniProt);NIAS_FLcDNA=J023077M16;TENOR=Os12t0273700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	10049330	10049797	.	+	0	Parent=Os12t0273700-01
Chr12	irgsp1_rep	CDS	10049911	10050312	.	+	0	Parent=Os12t0273700-01
Chr12	irgsp1_rep	CDS	10050400	10050458	.	+	0	Parent=Os12t0273700-01
Chr12	irgsp1_rep	CDS	10050692	10050782	.	+	1	Parent=Os12t0273700-01
Chr12	irgsp1_rep	CDS	10051224	10051310	.	+	0	Parent=Os12t0273700-01
Chr12	irgsp1_rep	CDS	10052556	10052654	.	+	0	Parent=Os12t0273700-01
Chr12	irgsp1_rep	three_prime_UTR	10052655	10053017	.	+	.	Parent=Os12t0273700-01
Chr12	irgsp1_rep	mRNA	10053411	10056454	.	+	.	ID=Os12t0273800-00;Name=Os12t0273800-00;Locus_id=Os12g0273800;Note=Similar to OSIGBa0147O06.5 protein.;Transcript_evidence=BT042417 (DDBJ);ORF_evidence=Q01LU0 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type endopeptidase activity (GO:0004197),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase%2C cysteine peptidase active site (IPR000169),Peptidase C1A%2C papain C-terminal (IPR000668),Peptidase C1A%2C papain (IPR013128),Proteinase inhibitor I29%2C cathepsin propeptide (IPR013201);Oryzabase=14988;TENOR=Os12t0273800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	10053411	10053876	.	+	0	Parent=Os12t0273800-00
Chr12	irgsp1_rep	CDS	10054614	10055200	.	+	2	Parent=Os12t0273800-00
Chr12	irgsp1_rep	three_prime_UTR	10055201	10055248	.	+	.	Parent=Os12t0273800-00
Chr12	irgsp1_rep	three_prime_UTR	10056289	10056454	.	+	.	Parent=Os12t0273800-00
Chr12	irgsp1_rep	mRNA	10058762	10059232	.	+	.	ID=Os12t0273850-00;Name=Os12t0273850-00;Locus_id=Os12g0273850;Note=Non-protein coding transcript.;Transcript_evidence=AM939974 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0273850-00
Chr12	irgsp1_rep	exon	10058762	10059232	.	+	.	Parent=Os12t0273850-00
Chr12	irgsp1_rep	mRNA	10058775	10061686	.	-	.	ID=Os12t0273900-00;Name=Os12t0273900-00;Locus_id=Os12g0273900;Note=Leucine-rich repeat domain containing protein.;Transcript_evidence=AK248596 (DDBJ);ORF_evidence=B8AZM4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210);TENOR=Os12t0273900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	10059389	10061686	.	-	0	Parent=Os12t0273900-00
Chr12	irgsp1_rep	three_prime_UTR	10058775	10059388	.	-	.	Parent=Os12t0273900-00
Chr12	irgsp1_rep	mRNA	10062718	10066028	.	-	.	ID=Os12t0273980-00;Name=Os12t0273980-00;Locus_id=Os12g0273980;Note=Similar to Leucine Rich Repeat family protein%2C expressed.;Transcript_evidence=EU946390 (DDBJ);ORF_evidence=Q2QU42 (UniProt);InterPro=Initiation factor eIF-4 gamma%2C MA3 (IPR003891);TENOR=Os12t0273980-00;KEGG=Os12t0273980-00
Chr12	irgsp1_rep	CDS	10065834	10066028	.	-	0	Parent=Os12t0273980-00
Chr12	irgsp1_rep	CDS	10062718	10063308	.	-	0	Parent=Os12t0273980-00
Chr12	irgsp1_rep	mRNA	10070074	10072136	.	-	.	ID=Os12t0274200-01;Name=Os12t0274200-01;Locus_id=Os12g0274200;CGSNL Gene Symbol=GELP113;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 113;Oryzabase Gene Symbol Synonym(s)=OsGELP113;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 113;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK063071 (DDBJ%2C Best hit);ORF_evidence=NP_564430.1 (RefSeq);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=001-110-H02;Oryzabase=11063;Expression=AK063071;TENOR=Os12t0274200-01;KEGG=Os12t0274200-01
Chr12	irgsp1_rep	five_prime_UTR	10072082	10072136	.	-	.	Parent=Os12t0274200-01
Chr12	irgsp1_rep	CDS	10071689	10072081	.	-	0	Parent=Os12t0274200-01
Chr12	irgsp1_rep	CDS	10070633	10071038	.	-	0	Parent=Os12t0274200-01
Chr12	irgsp1_rep	CDS	10070160	10070206	.	-	2	Parent=Os12t0274200-01
Chr12	irgsp1_rep	three_prime_UTR	10070074	10070159	.	-	.	Parent=Os12t0274200-01
Chr12	irgsp1_rep	mRNA	10072058	10075165	.	+	.	ID=Os12t0274450-01;Name=Os12t0274450-01;Locus_id=Os12g0274450;Note=Conserved hypothetical protein.;Transcript_evidence=AK288303 (DDBJ%2C Best hit);ORF_evidence=Q94HL1 (UniProt);NIAS_FLcDNA=J090020E14;TENOR=Os12t0274450-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	10072058	10074948	.	+	.	Parent=Os12t0274450-01
Chr12	irgsp1_rep	CDS	10074949	10075086	.	+	0	Parent=Os12t0274450-01
Chr12	irgsp1_rep	three_prime_UTR	10075087	10075165	.	+	.	Parent=Os12t0274450-01
Chr12	irgsp1_rep	mRNA	10080505	10081588	.	-	.	ID=Os12t0274700-01;Name=Os12t0274700-01;Locus_id=Os12g0274700;CGSNL Gene Symbol=RBCS;CGSNL Gene Name=RUBISCO SMALL SUBUNIT;Oryzabase Gene Symbol Synonym(s)=rbcS%2C OsRbcS%2C RBCS-C%2C RbcS2%2C OsRBCS2%2C RbcS1%2C OsRbcS2%2C OsrbcS1;Oryzabase Gene Name Synonym(s)=Small subunits of Rubisco%2C "Ribulose bisphosphate carboxylase small chain%2C chloroplastic"%2C RuBisCO small subunit%2C Ribulose bisphosphate carboxylase small chain C%2C RuBisCO small subunit C%2C RuBisCO small subunit 2%2C ribulose-1%2C 5-bisphosphate carboxylase/oxygenase small subunit%2C Ribulose-1%2C 5-Bisphosphate Carboxylase/Oxygenase Small Subunit 2%2C small subunit of ribulose-1%2C 5-bisphosphate carboxylase;Note=Similar to Petunia ribulose 1%2C5-bisphosphate carboxylase small subunit mRNA (clone pSSU 51)%2C partial cds. (Fragment).;Transcript_evidence=AK121444 (DDBJ%2C Best hit);ORF_evidence=Q0INY7 (UniProt);InterPro=Ribulose bisphosphate carboxylase small chain%2C domain (IPR000894),Ribulose-1%2C5-bisphosphate carboxylase small subunit%2C N-terminal (IPR024680),Ribulose bisphosphate carboxylase%2C small chain (IPR024681);NIAS_FLcDNA=J023141B14;Oryzabase=6394;TENOR=Os12t0274700-01
Chr12	irgsp1_rep	five_prime_UTR	10081382	10081588	.	-	.	Parent=Os12t0274700-01
Chr12	irgsp1_rep	CDS	10081235	10081381	.	-	0	Parent=Os12t0274700-01
Chr12	irgsp1_rep	CDS	10080751	10081131	.	-	0	Parent=Os12t0274700-01
Chr12	irgsp1_rep	three_prime_UTR	10080505	10080750	.	-	.	Parent=Os12t0274700-01
Chr12	irgsp1_rep	mRNA	10080508	10081440	.	-	.	ID=Os12t0274700-02;Name=Os12t0274700-02;Locus_id=Os12g0274700;CGSNL Gene Symbol=RBCS;CGSNL Gene Name=RUBISCO SMALL SUBUNIT;Oryzabase Gene Symbol Synonym(s)=rbcS%2C OsRbcS%2C RBCS-C%2C RbcS2%2C OsRBCS2%2C RbcS1%2C OsRbcS2%2C OsrbcS1;Oryzabase Gene Name Synonym(s)=Small subunits of Rubisco%2C "Ribulose bisphosphate carboxylase small chain%2C chloroplastic"%2C RuBisCO small subunit%2C Ribulose bisphosphate carboxylase small chain C%2C RuBisCO small subunit C%2C RuBisCO small subunit 2%2C ribulose-1%2C 5-bisphosphate carboxylase/oxygenase small subunit%2C Ribulose-1%2C 5-Bisphosphate Carboxylase/Oxygenase Small Subunit 2%2C small subunit of ribulose-1%2C 5-bisphosphate carboxylase;Note=Similar to Petunia ribulose 1%2C5-bisphosphate carboxylase small subunit mRNA (clone pSSU 51)%2C partial cds. (Fragment).;Transcript_evidence=AK061611 (DDBJ%2C Best hit),AK119219 (DDBJ%2C Best hit);ORF_evidence=Q0INY7 (UniProt);InterPro=Ribulose bisphosphate carboxylase small chain%2C domain (IPR000894),Ribulose-1%2C5-bisphosphate carboxylase small subunit%2C N-terminal (IPR024680),Ribulose bisphosphate carboxylase%2C small chain (IPR024681);NIAS_FLcDNA=001-032-F07,001-046-F11;Oryzabase=6394;TENOR=Os12t0274700-02
Chr12	irgsp1_rep	five_prime_UTR	10081382	10081440	.	-	.	Parent=Os12t0274700-02
Chr12	irgsp1_rep	CDS	10081235	10081381	.	-	0	Parent=Os12t0274700-02
Chr12	irgsp1_rep	CDS	10080751	10081131	.	-	0	Parent=Os12t0274700-02
Chr12	irgsp1_rep	three_prime_UTR	10080508	10080750	.	-	.	Parent=Os12t0274700-02
Chr12	irgsp1_rep	mRNA	10080770	10081387	.	+	.	ID=Os12t0274750-00;Name=Os12t0274750-00;Locus_id=Os12g0274750;Note=Hypothetical gene.;Transcript_evidence=BT085253 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0274750-00;KEGG=Os12t0274750-00
Chr12	irgsp1_rep	five_prime_UTR	10080770	10080771	.	+	.	Parent=Os12t0274750-00
Chr12	irgsp1_rep	CDS	10080772	10081146	.	+	0	Parent=Os12t0274750-00
Chr12	irgsp1_rep	three_prime_UTR	10081147	10081387	.	+	.	Parent=Os12t0274750-00
Chr12	irgsp1_rep	mRNA	10136113	10139255	.	-	.	ID=Os12t0275400-01;Name=Os12t0275400-01;Locus_id=Os12g0275400;Note=Hypothetical conserved gene.;Transcript_evidence=AK071232 (DDBJ%2C Best hit);ORF_evidence=B8ATE8 (UniProt);NIAS_FLcDNA=J023088E21;Expression=AK071232;TENOR=Os12t0275400-01;KEGG=Os12t0275400-01
Chr12	irgsp1_rep	CDS	10139106	10139255	.	-	0	Parent=Os12t0275400-01
Chr12	irgsp1_rep	CDS	10138290	10138442	.	-	0	Parent=Os12t0275400-01
Chr12	irgsp1_rep	three_prime_UTR	10138214	10138289	.	-	.	Parent=Os12t0275400-01
Chr12	irgsp1_rep	three_prime_UTR	10137375	10137531	.	-	.	Parent=Os12t0275400-01
Chr12	irgsp1_rep	three_prime_UTR	10136113	10136399	.	-	.	Parent=Os12t0275400-01
Chr12	irgsp1_rep	mRNA	10139814	10140816	.	+	.	ID=Os12t0275500-01;Name=Os12t0275500-01;Locus_id=Os12g0275500;Note=Conserved hypothetical protein.;Transcript_evidence=AK063250 (DDBJ%2C Best hit);ORF_evidence=A2Y208 (UniProt);NIAS_FLcDNA=001-112-H03;TENOR=Os12t0275500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	10139814	10139863	.	+	.	Parent=Os12t0275500-01
Chr12	irgsp1_rep	CDS	10139864	10139988	.	+	0	Parent=Os12t0275500-01
Chr12	irgsp1_rep	CDS	10140139	10140328	.	+	1	Parent=Os12t0275500-01
Chr12	irgsp1_rep	CDS	10140458	10140559	.	+	0	Parent=Os12t0275500-01
Chr12	irgsp1_rep	three_prime_UTR	10140560	10140816	.	+	.	Parent=Os12t0275500-01
Chr12	irgsp1_rep	mRNA	10208672	10211101	.	-	.	ID=Os12t0276100-01;Name=Os12t0276100-01;Locus_id=Os12g0276100;Note=Conserved hypothetical protein.;Transcript_evidence=AK062912 (DDBJ%2C Best hit);ORF_evidence=B8AZN5 (UniProt);NIAS_FLcDNA=001-108-G10;Expression=AK062912;TENOR=Os12t0276100-01;KEGG=Os12t0276100-01
Chr12	irgsp1_rep	CDS	10210909	10211101	.	-	0	Parent=Os12t0276100-01
Chr12	irgsp1_rep	CDS	10209593	10209654	.	-	2	Parent=Os12t0276100-01
Chr12	irgsp1_rep	CDS	10209357	10209461	.	-	0	Parent=Os12t0276100-01
Chr12	irgsp1_rep	CDS	10209015	10209146	.	-	0	Parent=Os12t0276100-01
Chr12	irgsp1_rep	three_prime_UTR	10208672	10209014	.	-	.	Parent=Os12t0276100-01
Chr12	irgsp1_rep	mRNA	10211510	10212437	.	-	.	ID=Os12t0276300-01;Name=Os12t0276300-01;Locus_id=Os12g0276300;Note=Similar to Ubiquitin family protein%2C expressed.;Transcript_evidence=AK109655 (DDBJ%2C Best hit);ORF_evidence=Q2QU13 (UniProt);NIAS_FLcDNA=002-140-F01;TENOR=Os12t0276300-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	10211529	10212437	.	-	0	Parent=Os12t0276300-01
Chr12	irgsp1_rep	three_prime_UTR	10211510	10211528	.	-	.	Parent=Os12t0276300-01
Chr12	irgsp1_rep	mRNA	10227338	10228115	.	+	.	ID=Os12t0276550-00;Name=Os12t0276550-00;Locus_id=Os12g0276550;Note=Hypothetical gene.;Transcript_evidence=CT835578 (DDBJ%2C Best hit);ORF_evidence=Q5N7E4 (UniProt);TENOR=Os12t0276550-00
Chr12	irgsp1_rep	CDS	10227338	10227503	.	+	0	Parent=Os12t0276550-00
Chr12	irgsp1_rep	CDS	10227966	10228042	.	+	2	Parent=Os12t0276550-00
Chr12	irgsp1_rep	three_prime_UTR	10228043	10228115	.	+	.	Parent=Os12t0276550-00
Chr12	irgsp1_rep	mRNA	10254122	10257442	.	-	.	ID=Os12t0277000-01;Name=Os12t0277000-01;Locus_id=Os12g0277000;Oryzabase Gene Symbol Synonym(s)=OsPUB25;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 25%2C U-box protein 25;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK099846 (DDBJ%2C Best hit);ORF_evidence=B8AZN8 (UniProt);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),U box domain (IPR003613),Armadillo-like helical (IPR011989),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013109F13;Oryzabase=17817;Expression=AK099846;TENOR=Os12t0277000-01;KEGG=Os12t0277000-01
Chr12	irgsp1_rep	five_prime_UTR	10257379	10257442	.	-	.	Parent=Os12t0277000-01
Chr12	irgsp1_rep	CDS	10257339	10257378	.	-	0	Parent=Os12t0277000-01
Chr12	irgsp1_rep	CDS	10256687	10257243	.	-	2	Parent=Os12t0277000-01
Chr12	irgsp1_rep	CDS	10256281	10256590	.	-	0	Parent=Os12t0277000-01
Chr12	irgsp1_rep	CDS	10254389	10256013	.	-	2	Parent=Os12t0277000-01
Chr12	irgsp1_rep	three_prime_UTR	10254122	10254388	.	-	.	Parent=Os12t0277000-01
Chr12	irgsp1_rep	mRNA	10254153	10256848	.	-	.	ID=Os12t0277000-02;Name=Os12t0277000-02;Locus_id=Os12g0277000;Oryzabase Gene Symbol Synonym(s)=OsPUB25;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 25%2C U-box protein 25;Note=Hypothetical conserved gene.;Transcript_evidence=AK066847 (DDBJ%2C Best hit);ORF_evidence=B8AZN8 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013075H16;Oryzabase=17817;Expression=AK066847;TENOR=Os12t0277000-02;KEGG=Os12t0277000-02
Chr12	irgsp1_rep	CDS	10256687	10256848	.	-	0	Parent=Os12t0277000-02
Chr12	irgsp1_rep	CDS	10256281	10256590	.	-	0	Parent=Os12t0277000-02
Chr12	irgsp1_rep	CDS	10254389	10256013	.	-	2	Parent=Os12t0277000-02
Chr12	irgsp1_rep	three_prime_UTR	10254153	10254388	.	-	.	Parent=Os12t0277000-02
Chr12	irgsp1_rep	mRNA	10258835	10259284	.	-	.	ID=Os12t0277200-00;Name=Os12t0277200-00;Locus_id=Os12g0277200;Note=Conserved hypothetical protein.;Transcript_evidence=AK359903 (DDBJ);ORF_evidence=Q6ES44 (UniProt);TENOR=Os12t0277200-00
Chr12	irgsp1_rep	CDS	10258835	10259284	.	-	0	Parent=Os12t0277200-00
Chr12	irgsp1_rep	mRNA	10281013	10286711	.	-	.	ID=Os12t0277400-01;Name=Os12t0277400-01;Locus_id=Os12g0277400;Oryzabase Gene Symbol Synonym(s)=OsPUB23;Oryzabase Gene Name Synonym(s)=plant U-box-containing protein 23%2C U-box protein 23;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK102429 (DDBJ%2C Best hit);ORF_evidence=XP_002887635.1 (RefSeq);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),U box domain (IPR003613),Armadillo-like helical (IPR011989),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033093H07;Oryzabase=17815;Expression=AK102429;TENOR=Os12t0277400-01;KEGG=Os12t0277400-01
Chr12	irgsp1_rep	five_prime_UTR	10286216	10286711	.	-	.	Parent=Os12t0277400-01
Chr12	irgsp1_rep	five_prime_UTR	10285260	10285348	.	-	.	Parent=Os12t0277400-01
Chr12	irgsp1_rep	CDS	10284729	10285259	.	-	0	Parent=Os12t0277400-01
Chr12	irgsp1_rep	CDS	10284339	10284648	.	-	0	Parent=Os12t0277400-01
Chr12	irgsp1_rep	CDS	10281404	10282983	.	-	2	Parent=Os12t0277400-01
Chr12	irgsp1_rep	three_prime_UTR	10281013	10281403	.	-	.	Parent=Os12t0277400-01
Chr12	irgsp1_rep	mRNA	10293602	10297901	.	+	.	ID=Os12t0277500-01;Name=Os12t0277500-01;Locus_id=Os12g0277500;RAP-DB Gene Symbol Synonym(s)=OsCPn60alpha1%2C OsCPn60&alpha%3B1;RAP-DB Gene Name Synonym(s)=chaperonin 60 alpha subunit 1;Oryzabase Gene Symbol Synonym(s)=OsCPn60alpha1%2C OsCPn60a1;Oryzabase Gene Name Synonym(s)=chaperonin 60 alpha subunit 1;Note=Plastid chaperonin 60 alpha subunit%2C Folding of Rubisco large subunit (rbcL)%2C Seedling development;Transcript_evidence=AK120503;ORF_evidence=Q2QU06;GO=Biological Process: protein folding (GO:0006457),Biological Process: protein refolding (GO:0042026),Molecular Function: ATP binding (GO:0005524),Cellular Component: cytoplasm (GO:0005737);InterPro=Chaperonin Cpn60/TCP-1 family (IPR002423),Chaperonin Cpn60 (IPR001844),GroEL-like equatorial domain (IPR027413),GroEL-like apical domain (IPR027409),Chaperonin Cpn60%2C conserved site (IPR018370);NIAS_FLcDNA=J013122K17;Manual Curation=January 24%2C 2017;Literature_PMID=23620301;Oryzabase=14348;TENOR=Os12t0277500-01;Subcellular location=chloroplast stroma (GO:0009570)
Chr12	irgsp1_rep	five_prime_UTR	10293602	10293687	.	+	.	Parent=Os12t0277500-01
Chr12	irgsp1_rep	CDS	10293688	10293744	.	+	0	Parent=Os12t0277500-01
Chr12	irgsp1_rep	CDS	10293982	10294135	.	+	0	Parent=Os12t0277500-01
Chr12	irgsp1_rep	CDS	10295041	10295162	.	+	2	Parent=Os12t0277500-01
Chr12	irgsp1_rep	CDS	10295267	10295474	.	+	0	Parent=Os12t0277500-01
Chr12	irgsp1_rep	CDS	10295623	10295768	.	+	2	Parent=Os12t0277500-01
Chr12	irgsp1_rep	CDS	10295899	10296205	.	+	0	Parent=Os12t0277500-01
Chr12	irgsp1_rep	CDS	10296645	10297096	.	+	2	Parent=Os12t0277500-01
Chr12	irgsp1_rep	CDS	10297367	10297657	.	+	0	Parent=Os12t0277500-01
Chr12	irgsp1_rep	three_prime_UTR	10297658	10297901	.	+	.	Parent=Os12t0277500-01
Chr12	irgsp1_rep	mRNA	10295320	10297849	.	+	.	ID=Os12t0277500-02;Name=Os12t0277500-02;Locus_id=Os12g0277500;Oryzabase Gene Symbol Synonym(s)=OsCPn60alpha1%2C OsCPn60a1;Oryzabase Gene Name Synonym(s)=chaperonin 60 alpha subunit 1;Note=Similar to RuBisCO large subunit-binding protein subunit alpha%2C chloroplastic (Fragment).;Transcript_evidence=AK119217 (DDBJ%2C Best hit);ORF_evidence=P08823 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: protein refolding (GO:0042026),Biological Process: cellular protein metabolic process (GO:0044267),Cellular Component: cytoplasm (GO:0005737),Molecular Function: ATP binding (GO:0005524);InterPro=Chaperonin Cpn60 (IPR001844),Chaperonin Cpn60/TCP-1 (IPR002423),Chaperonin Cpn60%2C conserved site (IPR018370);NIAS_FLcDNA=001-046-E10;Oryzabase=14348;Expression=AK119217;TENOR=Os12t0277500-02;KEGG=Os12t0277500-02
Chr12	irgsp1_rep	five_prime_UTR	10295320	10295320	.	+	.	Parent=Os12t0277500-02
Chr12	irgsp1_rep	CDS	10295321	10295474	.	+	0	Parent=Os12t0277500-02
Chr12	irgsp1_rep	CDS	10295623	10295768	.	+	2	Parent=Os12t0277500-02
Chr12	irgsp1_rep	CDS	10295899	10296205	.	+	0	Parent=Os12t0277500-02
Chr12	irgsp1_rep	CDS	10296645	10297096	.	+	2	Parent=Os12t0277500-02
Chr12	irgsp1_rep	CDS	10297367	10297657	.	+	0	Parent=Os12t0277500-02
Chr12	irgsp1_rep	three_prime_UTR	10297658	10297849	.	+	.	Parent=Os12t0277500-02
Chr12	irgsp1_rep	mRNA	10296056	10297883	.	+	.	ID=Os12t0277500-03;Name=Os12t0277500-03;Locus_id=Os12g0277500;Oryzabase Gene Symbol Synonym(s)=OsCPn60alpha1%2C OsCPn60a1;Oryzabase Gene Name Synonym(s)=chaperonin 60 alpha subunit 1;Note=Similar to RuBisCO large subunit-binding protein subunit alpha%2C chloroplastic (Fragment).;Transcript_evidence=AK119223 (DDBJ%2C Best hit);ORF_evidence=P08823 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: protein refolding (GO:0042026),Biological Process: cellular protein metabolic process (GO:0044267),Cellular Component: cytoplasm (GO:0005737),Molecular Function: ATP binding (GO:0005524);InterPro=Chaperonin Cpn60 (IPR001844),Chaperonin Cpn60/TCP-1 (IPR002423),Chaperonin Cpn60%2C conserved site (IPR018370);NIAS_FLcDNA=001-100-D06;Oryzabase=14348;Expression=AK119223;TENOR=Os12t0277500-03;KEGG=Os12t0277500-03
Chr12	irgsp1_rep	five_prime_UTR	10296056	10296057	.	+	.	Parent=Os12t0277500-03
Chr12	irgsp1_rep	CDS	10296058	10296205	.	+	0	Parent=Os12t0277500-03
Chr12	irgsp1_rep	CDS	10296645	10297096	.	+	2	Parent=Os12t0277500-03
Chr12	irgsp1_rep	CDS	10297367	10297657	.	+	0	Parent=Os12t0277500-03
Chr12	irgsp1_rep	three_prime_UTR	10297658	10297883	.	+	.	Parent=Os12t0277500-03
Chr12	irgsp1_rep	mRNA	10296108	10297903	.	+	.	ID=Os12t0277500-04;Name=Os12t0277500-04;Locus_id=Os12g0277500;Oryzabase Gene Symbol Synonym(s)=OsCPn60alpha1%2C OsCPn60a1;Oryzabase Gene Name Synonym(s)=chaperonin 60 alpha subunit 1;Note=Similar to RuBisCO large subunit-binding protein subunit alpha%2C chloroplastic (Fragment).;Transcript_evidence=AK061410 (DDBJ%2C Best hit);ORF_evidence=P08823 (UniProt);GO=Biological Process: protein folding (GO:0006457),Biological Process: protein refolding (GO:0042026),Biological Process: cellular protein metabolic process (GO:0044267),Cellular Component: cytoplasm (GO:0005737),Molecular Function: ATP binding (GO:0005524);InterPro=Chaperonin Cpn60 (IPR001844),Chaperonin Cpn60/TCP-1 (IPR002423),Chaperonin Cpn60%2C conserved site (IPR018370);NIAS_FLcDNA=006-306-B08;Oryzabase=14348;Expression=AK061410;TENOR=Os12t0277500-04;KEGG=Os12t0277500-04
Chr12	irgsp1_rep	five_prime_UTR	10296108	10296108	.	+	.	Parent=Os12t0277500-04
Chr12	irgsp1_rep	CDS	10296109	10296205	.	+	0	Parent=Os12t0277500-04
Chr12	irgsp1_rep	CDS	10296645	10297096	.	+	2	Parent=Os12t0277500-04
Chr12	irgsp1_rep	CDS	10297367	10297657	.	+	0	Parent=Os12t0277500-04
Chr12	irgsp1_rep	three_prime_UTR	10297658	10297903	.	+	.	Parent=Os12t0277500-04
Chr12	irgsp1_rep	mRNA	10294024	10297620	.	-	.	ID=Os12t0277650-00;Name=Os12t0277650-00;Locus_id=Os12g0277650;Note=Hypothetical protein.;Transcript_evidence=tplb0035a17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0277650-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	10297389	10297620	.	-	.	Parent=Os12t0277650-00
Chr12	irgsp1_rep	five_prime_UTR	10296647	10297117	.	-	.	Parent=Os12t0277650-00
Chr12	irgsp1_rep	five_prime_UTR	10295897	10296207	.	-	.	Parent=Os12t0277650-00
Chr12	irgsp1_rep	five_prime_UTR	10295621	10295766	.	-	.	Parent=Os12t0277650-00
Chr12	irgsp1_rep	five_prime_UTR	10295338	10295480	.	-	.	Parent=Os12t0277650-00
Chr12	irgsp1_rep	CDS	10295244	10295337	.	-	0	Parent=Os12t0277650-00
Chr12	irgsp1_rep	CDS	10295049	10295139	.	-	2	Parent=Os12t0277650-00
Chr12	irgsp1_rep	CDS	10294024	10294144	.	-	1	Parent=Os12t0277650-00
Chr12	irgsp1_rep	mRNA	10320410	10321997	.	-	.	ID=Os12t0277900-01;Name=Os12t0277900-01;Locus_id=Os12g0277900;Note=Hypothetical conserved gene.;Transcript_evidence=AK287611 (DDBJ%2C Best hit);ORF_evidence=Q2QU02 (UniProt);NIAS_FLcDNA=J065059A09;TENOR=Os12t0277900-01;KEGG=Os12t0277900-01
Chr12	irgsp1_rep	five_prime_UTR	10321922	10321997	.	-	.	Parent=Os12t0277900-01
Chr12	irgsp1_rep	five_prime_UTR	10321860	10321907	.	-	.	Parent=Os12t0277900-01
Chr12	irgsp1_rep	CDS	10321487	10321859	.	-	0	Parent=Os12t0277900-01
Chr12	irgsp1_rep	CDS	10320837	10321390	.	-	2	Parent=Os12t0277900-01
Chr12	irgsp1_rep	three_prime_UTR	10320410	10320836	.	-	.	Parent=Os12t0277900-01
Chr12	irgsp1_rep	mRNA	10320410	10321941	.	+	.	ID=Os12t0278101-01;Name=Os12t0278101-01;Locus_id=Os12g0278101;Note=Hypothetical gene.;Transcript_evidence=AK241036 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065059A09;TENOR=Os12t0278101-01;KEGG=Os12t0278101-01
Chr12	irgsp1_rep	five_prime_UTR	10320410	10321001	.	+	.	Parent=Os12t0278101-01
Chr12	irgsp1_rep	CDS	10321002	10321358	.	+	0	Parent=Os12t0278101-01
Chr12	irgsp1_rep	three_prime_UTR	10321359	10321390	.	+	.	Parent=Os12t0278101-01
Chr12	irgsp1_rep	three_prime_UTR	10321487	10321941	.	+	.	Parent=Os12t0278101-01
Chr12	irgsp1_rep	mRNA	10398963	10404743	.	-	.	ID=Os12t0278401-00;Name=Os12t0278401-00;Locus_id=Os12g0278401;Note=Conserved hypothetical protein.;Transcript_evidence=AK099838 (DDBJ%2C Secondary hit);ORF_evidence=B8BP36 (UniProt);TENOR=Os12t0278401-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	10404612	10404743	.	-	.	Parent=Os12t0278401-00
Chr12	irgsp1_rep	five_prime_UTR	10401075	10401092	.	-	.	Parent=Os12t0278401-00
Chr12	irgsp1_rep	five_prime_UTR	10400763	10400978	.	-	.	Parent=Os12t0278401-00
Chr12	irgsp1_rep	five_prime_UTR	10400539	10400631	.	-	.	Parent=Os12t0278401-00
Chr12	irgsp1_rep	five_prime_UTR	10400380	10400460	.	-	.	Parent=Os12t0278401-00
Chr12	irgsp1_rep	five_prime_UTR	10399909	10400293	.	-	.	Parent=Os12t0278401-00
Chr12	irgsp1_rep	five_prime_UTR	10399762	10399815	.	-	.	Parent=Os12t0278401-00
Chr12	irgsp1_rep	CDS	10399755	10399761	.	-	0	Parent=Os12t0278401-00
Chr12	irgsp1_rep	CDS	10399132	10399352	.	-	2	Parent=Os12t0278401-00
Chr12	irgsp1_rep	three_prime_UTR	10398963	10399131	.	-	.	Parent=Os12t0278401-00
Chr12	irgsp1_rep	mRNA	10420150	10425828	.	-	.	ID=Os12t0278700-01;Name=Os12t0278700-01;Locus_id=Os12g0278700;Note=Similar to cystinosin.;Transcript_evidence=AK068027 (DDBJ%2C Best hit);ORF_evidence=B4FX59 (UniProt);InterPro=Lysosomal cystine transporter (IPR005282),Cystinosin/ERS1p repeat (IPR006603);NIAS_FLcDNA=J013134P03;Expression=AK068027;TENOR=Os12t0278700-01;KEGG=Os12t0278700-01
Chr12	irgsp1_rep	five_prime_UTR	10425495	10425828	.	-	.	Parent=Os12t0278700-01
Chr12	irgsp1_rep	CDS	10425376	10425494	.	-	0	Parent=Os12t0278700-01
Chr12	irgsp1_rep	CDS	10423860	10423992	.	-	1	Parent=Os12t0278700-01
Chr12	irgsp1_rep	CDS	10421855	10421944	.	-	0	Parent=Os12t0278700-01
Chr12	irgsp1_rep	CDS	10421653	10421777	.	-	0	Parent=Os12t0278700-01
Chr12	irgsp1_rep	CDS	10421477	10421519	.	-	1	Parent=Os12t0278700-01
Chr12	irgsp1_rep	CDS	10420800	10420917	.	-	0	Parent=Os12t0278700-01
Chr12	irgsp1_rep	CDS	10420663	10420712	.	-	2	Parent=Os12t0278700-01
Chr12	irgsp1_rep	CDS	10420362	10420508	.	-	0	Parent=Os12t0278700-01
Chr12	irgsp1_rep	three_prime_UTR	10420150	10420361	.	-	.	Parent=Os12t0278700-01
Chr12	irgsp1_rep	mRNA	10417668	10425588	.	-	.	ID=Os12t0278700-02;Name=Os12t0278700-02;Locus_id=Os12g0278700;Note=Similar to Cystinosin homolog.;Transcript_evidence=AK071421 (DDBJ%2C Best hit);ORF_evidence=Q2QTY6 (UniProt);InterPro=Lysosomal cystine transporter (IPR005282),Cystinosin/ERS1p repeat (IPR006603);NIAS_FLcDNA=J023092B19;Expression=AK071421;TENOR=Os12t0278700-02;KEGG=Os12t0278700-02
Chr12	irgsp1_rep	five_prime_UTR	10425495	10425588	.	-	.	Parent=Os12t0278700-02
Chr12	irgsp1_rep	CDS	10425376	10425494	.	-	0	Parent=Os12t0278700-02
Chr12	irgsp1_rep	CDS	10423860	10423992	.	-	1	Parent=Os12t0278700-02
Chr12	irgsp1_rep	CDS	10421855	10421944	.	-	0	Parent=Os12t0278700-02
Chr12	irgsp1_rep	CDS	10421653	10421777	.	-	0	Parent=Os12t0278700-02
Chr12	irgsp1_rep	CDS	10421477	10421519	.	-	1	Parent=Os12t0278700-02
Chr12	irgsp1_rep	CDS	10420800	10420917	.	-	0	Parent=Os12t0278700-02
Chr12	irgsp1_rep	CDS	10420663	10420712	.	-	2	Parent=Os12t0278700-02
Chr12	irgsp1_rep	CDS	10420436	10420508	.	-	0	Parent=Os12t0278700-02
Chr12	irgsp1_rep	CDS	10417922	10417977	.	-	2	Parent=Os12t0278700-02
Chr12	irgsp1_rep	three_prime_UTR	10417668	10417921	.	-	.	Parent=Os12t0278700-02
Chr12	irgsp1_rep	mRNA	10436107	10444026	.	-	.	ID=Os12t0278800-01;Name=Os12t0278800-01;Locus_id=Os12g0278800;CGSNL Gene Symbol=C3H65;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 65;Oryzabase Gene Symbol Synonym(s)=OsC3H65%2C DLN256%2C OsDLN256;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 65%2C DLN repressor 256%2C DLN motif protein 256;Note=Similar to Zinc finger CCCH type domain containing protein ZFN-like 1. Splice isoform 3.;Transcript_evidence=AK121774 (DDBJ%2C Best hit);ORF_evidence=NP_001151211.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=J033092M18;Oryzabase=8630;Expression=AK121774;TENOR=Os12t0278800-01;KEGG=Os12t0278800-01
Chr12	irgsp1_rep	five_prime_UTR	10443896	10444026	.	-	.	Parent=Os12t0278800-01
Chr12	irgsp1_rep	CDS	10443473	10443895	.	-	0	Parent=Os12t0278800-01
Chr12	irgsp1_rep	CDS	10443165	10443245	.	-	0	Parent=Os12t0278800-01
Chr12	irgsp1_rep	CDS	10442506	10442568	.	-	0	Parent=Os12t0278800-01
Chr12	irgsp1_rep	CDS	10441696	10441755	.	-	0	Parent=Os12t0278800-01
Chr12	irgsp1_rep	CDS	10441422	10441466	.	-	0	Parent=Os12t0278800-01
Chr12	irgsp1_rep	CDS	10440804	10440863	.	-	0	Parent=Os12t0278800-01
Chr12	irgsp1_rep	CDS	10438911	10439036	.	-	0	Parent=Os12t0278800-01
Chr12	irgsp1_rep	CDS	10437799	10438104	.	-	0	Parent=Os12t0278800-01
Chr12	irgsp1_rep	CDS	10436929	10437198	.	-	0	Parent=Os12t0278800-01
Chr12	irgsp1_rep	CDS	10436388	10436543	.	-	0	Parent=Os12t0278800-01
Chr12	irgsp1_rep	three_prime_UTR	10436107	10436387	.	-	.	Parent=Os12t0278800-01
Chr12	irgsp1_rep	mRNA	10436132	10443970	.	-	.	ID=Os12t0278800-02;Name=Os12t0278800-02;Locus_id=Os12g0278800;CGSNL Gene Symbol=C3H65;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 65;Oryzabase Gene Symbol Synonym(s)=OsC3H65%2C DLN256%2C OsDLN256;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 65%2C DLN repressor 256%2C DLN motif protein 256;Note=Similar to zinc finger CCCH type domain-containing protein ZFN-like 6.;Transcript_evidence=AK111498 (DDBJ%2C Best hit);ORF_evidence=NP_001151211.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=J013000H23;Oryzabase=8630;Expression=AK111498;TENOR=Os12t0278800-02;KEGG=Os12t0278800-02
Chr12	irgsp1_rep	five_prime_UTR	10443896	10443970	.	-	.	Parent=Os12t0278800-02
Chr12	irgsp1_rep	CDS	10443473	10443895	.	-	0	Parent=Os12t0278800-02
Chr12	irgsp1_rep	CDS	10443165	10443245	.	-	0	Parent=Os12t0278800-02
Chr12	irgsp1_rep	CDS	10442506	10442565	.	-	0	Parent=Os12t0278800-02
Chr12	irgsp1_rep	CDS	10441696	10441755	.	-	0	Parent=Os12t0278800-02
Chr12	irgsp1_rep	CDS	10441422	10441466	.	-	0	Parent=Os12t0278800-02
Chr12	irgsp1_rep	CDS	10440804	10440863	.	-	0	Parent=Os12t0278800-02
Chr12	irgsp1_rep	CDS	10438911	10439036	.	-	0	Parent=Os12t0278800-02
Chr12	irgsp1_rep	CDS	10437799	10438104	.	-	0	Parent=Os12t0278800-02
Chr12	irgsp1_rep	CDS	10436929	10437198	.	-	0	Parent=Os12t0278800-02
Chr12	irgsp1_rep	CDS	10436388	10436543	.	-	0	Parent=Os12t0278800-02
Chr12	irgsp1_rep	three_prime_UTR	10436132	10436387	.	-	.	Parent=Os12t0278800-02
Chr12	irgsp1_rep	mRNA	10436138	10443948	.	-	.	ID=Os12t0278800-03;Name=Os12t0278800-03;Locus_id=Os12g0278800;CGSNL Gene Symbol=C3H65;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 65;Oryzabase Gene Symbol Synonym(s)=OsC3H65%2C DLN256%2C OsDLN256;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 65%2C DLN repressor 256%2C DLN motif protein 256;Note=Similar to Zinc finger CCCH type domain containing protein ZFN-like 1. Splice isoform 3.;Transcript_evidence=AK111962 (DDBJ%2C Best hit);ORF_evidence=NP_001151211.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=001-032-B06;Oryzabase=8630;Expression=AK111962;TENOR=Os12t0278800-03;KEGG=Os12t0278800-03
Chr12	irgsp1_rep	five_prime_UTR	10443896	10443948	.	-	.	Parent=Os12t0278800-03
Chr12	irgsp1_rep	CDS	10443473	10443895	.	-	0	Parent=Os12t0278800-03
Chr12	irgsp1_rep	CDS	10443165	10443245	.	-	0	Parent=Os12t0278800-03
Chr12	irgsp1_rep	CDS	10442506	10442568	.	-	0	Parent=Os12t0278800-03
Chr12	irgsp1_rep	CDS	10441696	10441755	.	-	0	Parent=Os12t0278800-03
Chr12	irgsp1_rep	CDS	10441422	10441466	.	-	0	Parent=Os12t0278800-03
Chr12	irgsp1_rep	CDS	10440804	10440863	.	-	0	Parent=Os12t0278800-03
Chr12	irgsp1_rep	CDS	10438911	10439036	.	-	0	Parent=Os12t0278800-03
Chr12	irgsp1_rep	CDS	10437799	10438104	.	-	0	Parent=Os12t0278800-03
Chr12	irgsp1_rep	CDS	10436929	10437198	.	-	0	Parent=Os12t0278800-03
Chr12	irgsp1_rep	CDS	10436388	10436543	.	-	0	Parent=Os12t0278800-03
Chr12	irgsp1_rep	three_prime_UTR	10436138	10436387	.	-	.	Parent=Os12t0278800-03
Chr12	irgsp1_rep	mRNA	10454470	10458548	.	-	.	ID=Os12t0278900-01;Name=Os12t0278900-01;Locus_id=Os12g0278900;Note=Peptidase C1A%2C papain family protein.;Transcript_evidence=AK106816 (DDBJ%2C Best hit);ORF_evidence=A2ZJJ8 (UniProt);GO=Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase C1A%2C papain (IPR013128),Proteinase inhibitor I29%2C cathepsin propeptide (IPR013201);NIAS_FLcDNA=002-116-D03;Expression=AK106816;TENOR=Os12t0278900-01;KEGG=Os12t0278900-01
Chr12	irgsp1_rep	five_prime_UTR	10458368	10458548	.	-	.	Parent=Os12t0278900-01
Chr12	irgsp1_rep	five_prime_UTR	10457554	10457647	.	-	.	Parent=Os12t0278900-01
Chr12	irgsp1_rep	CDS	10457245	10457553	.	-	0	Parent=Os12t0278900-01
Chr12	irgsp1_rep	three_prime_UTR	10456550	10457244	.	-	.	Parent=Os12t0278900-01
Chr12	irgsp1_rep	three_prime_UTR	10455363	10455422	.	-	.	Parent=Os12t0278900-01
Chr12	irgsp1_rep	three_prime_UTR	10454470	10454858	.	-	.	Parent=Os12t0278900-01
Chr12	irgsp1_rep	mRNA	10458981	10466190	.	+	.	ID=Os12t0279000-01;Name=Os12t0279000-01;Locus_id=Os12g0279000;Note=Helicase%2C C-terminal domain containing protein.;Transcript_evidence=AK067502 (DDBJ%2C Best hit);ORF_evidence=Q2QTY0 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C in phosphorus-containing anhydrides (GO:0016818);InterPro=Helicase%2C C-terminal (IPR001650),DSH%2C C-terminal (IPR012961);NIAS_FLcDNA=J013108L13;TENOR=Os12t0279000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	10458981	10459376	.	+	.	Parent=Os12t0279000-01
Chr12	irgsp1_rep	five_prime_UTR	10460033	10460233	.	+	.	Parent=Os12t0279000-01
Chr12	irgsp1_rep	five_prime_UTR	10460314	10460500	.	+	.	Parent=Os12t0279000-01
Chr12	irgsp1_rep	CDS	10460501	10460532	.	+	0	Parent=Os12t0279000-01
Chr12	irgsp1_rep	CDS	10460609	10460966	.	+	1	Parent=Os12t0279000-01
Chr12	irgsp1_rep	CDS	10461074	10461178	.	+	0	Parent=Os12t0279000-01
Chr12	irgsp1_rep	CDS	10461676	10461786	.	+	0	Parent=Os12t0279000-01
Chr12	irgsp1_rep	CDS	10462417	10462667	.	+	0	Parent=Os12t0279000-01
Chr12	irgsp1_rep	CDS	10463002	10463125	.	+	1	Parent=Os12t0279000-01
Chr12	irgsp1_rep	CDS	10463419	10463695	.	+	0	Parent=Os12t0279000-01
Chr12	irgsp1_rep	CDS	10464191	10464336	.	+	2	Parent=Os12t0279000-01
Chr12	irgsp1_rep	CDS	10464428	10464577	.	+	0	Parent=Os12t0279000-01
Chr12	irgsp1_rep	CDS	10464657	10464889	.	+	0	Parent=Os12t0279000-01
Chr12	irgsp1_rep	CDS	10465225	10465489	.	+	1	Parent=Os12t0279000-01
Chr12	irgsp1_rep	CDS	10465615	10465893	.	+	0	Parent=Os12t0279000-01
Chr12	irgsp1_rep	three_prime_UTR	10465894	10466190	.	+	.	Parent=Os12t0279000-01
Chr12	irgsp1_rep	mRNA	10468382	10478397	.	-	.	ID=Os12t0279100-01;Name=Os12t0279100-01;Locus_id=Os12g0279100;Oryzabase Gene Symbol Synonym(s)=JMJ702%2C DLN257%2C OsDLN257;Oryzabase Gene Name Synonym(s)=Jumonji 702%2C DLN repressor 257%2C DLN motif protein 257;Note=Transcription factor jumonji domain containing protein.;Transcript_evidence=AK065251 (DDBJ%2C Best hit);ORF_evidence=B8BP43 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Transcription factor jumonji/aspartyl beta-hydroxylase (IPR003347),Transcription factor jumonji%2C JmjN (IPR003349),Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Transcription factor jumonji (IPR013129),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J013002J08;Oryzabase=15206;Expression=AK065251;TENOR=Os12t0279100-01;KEGG=Os12t0279100-01
Chr12	irgsp1_rep	five_prime_UTR	10478235	10478397	.	-	.	Parent=Os12t0279100-01
Chr12	irgsp1_rep	CDS	10477406	10478234	.	-	0	Parent=Os12t0279100-01
Chr12	irgsp1_rep	CDS	10474943	10475021	.	-	2	Parent=Os12t0279100-01
Chr12	irgsp1_rep	CDS	10474776	10474843	.	-	1	Parent=Os12t0279100-01
Chr12	irgsp1_rep	CDS	10472891	10473041	.	-	2	Parent=Os12t0279100-01
Chr12	irgsp1_rep	CDS	10471954	10472645	.	-	1	Parent=Os12t0279100-01
Chr12	irgsp1_rep	CDS	10470686	10471336	.	-	2	Parent=Os12t0279100-01
Chr12	irgsp1_rep	CDS	10468623	10470253	.	-	2	Parent=Os12t0279100-01
Chr12	irgsp1_rep	three_prime_UTR	10468382	10468622	.	-	.	Parent=Os12t0279100-01
Chr12	irgsp1_rep	mRNA	10506833	10515806	.	-	.	ID=Os12t0279600-01;Name=Os12t0279600-01;Locus_id=Os12g0279600;Note=Exodeoxyribonuclease III xth family protein.;Transcript_evidence=AK070295 (DDBJ%2C Best hit);ORF_evidence=NP_566904.2 (RefSeq);GO=Biological Process: DNA repair (GO:0006281),Molecular Function: nuclease activity (GO:0004518);InterPro=Exodeoxyribonuclease III xth (IPR004808),Endonuclease/exonuclease/phosphatase (IPR005135);NIAS_FLcDNA=J023049I11;Expression=AK070295;TENOR=Os12t0279600-01;KEGG=Os12t0279600-01
Chr12	irgsp1_rep	five_prime_UTR	10515716	10515806	.	-	.	Parent=Os12t0279600-01
Chr12	irgsp1_rep	CDS	10515428	10515715	.	-	0	Parent=Os12t0279600-01
Chr12	irgsp1_rep	CDS	10514303	10514395	.	-	0	Parent=Os12t0279600-01
Chr12	irgsp1_rep	CDS	10513795	10513939	.	-	0	Parent=Os12t0279600-01
Chr12	irgsp1_rep	CDS	10512694	10512892	.	-	2	Parent=Os12t0279600-01
Chr12	irgsp1_rep	CDS	10511735	10511813	.	-	1	Parent=Os12t0279600-01
Chr12	irgsp1_rep	CDS	10510772	10510833	.	-	0	Parent=Os12t0279600-01
Chr12	irgsp1_rep	CDS	10509086	10509172	.	-	1	Parent=Os12t0279600-01
Chr12	irgsp1_rep	CDS	10508481	10508584	.	-	1	Parent=Os12t0279600-01
Chr12	irgsp1_rep	CDS	10507123	10507205	.	-	2	Parent=Os12t0279600-01
Chr12	irgsp1_rep	three_prime_UTR	10506833	10507122	.	-	.	Parent=Os12t0279600-01
Chr12	irgsp1_rep	mRNA	10522532	10525270	.	-	.	ID=Os12t0279702-01;Name=Os12t0279702-01;Locus_id=Os12g0279702;Note=Conserved hypothetical protein.;Transcript_evidence=AK288729 (DDBJ%2C Best hit);ORF_evidence=Q8H369 (UniProt);NIAS_FLcDNA=J090063F09;TENOR=Os12t0279702-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	10524571	10525270	.	-	.	Parent=Os12t0279702-01
Chr12	irgsp1_rep	CDS	10524307	10524570	.	-	0	Parent=Os12t0279702-01
Chr12	irgsp1_rep	three_prime_UTR	10522532	10524306	.	-	.	Parent=Os12t0279702-01
Chr12	irgsp1_rep	mRNA	10530403	10530895	.	+	.	ID=Os12t0280050-00;Name=Os12t0280050-00;Locus_id=Os12g0280050;Note=Similar to Thioredoxin family protein.;Transcript_evidence=EU958748 (DDBJ);ORF_evidence=Q2QTX2 (UniProt);GO=Biological Process: glycerol ether metabolic process (GO:0006662),Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Thioredoxin (IPR005746),Thioredoxin-like fold (IPR012336),Thioredoxin domain (IPR013766);TENOR=Os12t0280050-00
Chr12	irgsp1_rep	five_prime_UTR	10530403	10530523	.	+	.	Parent=Os12t0280050-00
Chr12	irgsp1_rep	CDS	10530524	10530895	.	+	0	Parent=Os12t0280050-00
Chr12	irgsp1_rep	mRNA	10585739	10588443	.	+	.	ID=Os12t0280801-01;Name=Os12t0280801-01;Locus_id=Os12g0280801;Note=Similar to ESTs AU075609(C63344).;Transcript_evidence=AK287899 (DDBJ%2C Best hit);ORF_evidence=Q9SNJ2 (UniProt);NIAS_FLcDNA=J065210I20;TENOR=Os12t0280801-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	10585739	10586393	.	+	.	Parent=Os12t0280801-01
Chr12	irgsp1_rep	five_prime_UTR	10586595	10587171	.	+	.	Parent=Os12t0280801-01
Chr12	irgsp1_rep	CDS	10587172	10587432	.	+	0	Parent=Os12t0280801-01
Chr12	irgsp1_rep	three_prime_UTR	10587433	10588443	.	+	.	Parent=Os12t0280801-01
Chr12	irgsp1_rep	mRNA	10606417	10611917	.	-	.	ID=Os12t0281300-01;Name=Os12t0281300-01;Locus_id=Os12g0281300;RAP-DB Gene Symbol Synonym(s)=Pi-ta;RAP-DB Gene Name Synonym(s)=Pyricularia oryzae resistance-ta;CGSNL Gene Symbol=PITA;CGSNL Gene Name=PYRICULARIA ORYZAE RESISTANCE TA;Oryzabase Gene Symbol Synonym(s)=Pita%2C Pita (sl%2C Pi4a%2C Pi-ta)%2C Pita2%2C Pi4a%2C Pita%2C Pi-ta%2C Pita-2%2C Pi-ta2%2C Pi-4(t)%2C Pi-4%2C Pi4%2C Pi-4a(t)%2C OsTRXh6%2C TRXh6%2C OsTrx30;Oryzabase Gene Name Synonym(s)=Pyricularia oryzae resistance-ta%2C Magnaporthe grisea resistance-ta%2C Blast resistance ta%2C Thioredoxin H-type 6%2C H-type Thioredoxin 6%2C Thioredoxin 30;Note=Pi-ta protein belonging to the nucleotide-binding site leucine-rich repeat (NBS-LRR) class%2C Rice blast resistance (Nipponbare: susceptible);Transcript_evidence=AK066558;ORF_evidence=Q2QTV7;GO=Molecular Function: ADP binding (GO:0043531);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),Leucine-rich repeat domain superfamily (IPR032675),NB-ARC (IPR002182);NIAS_FLcDNA=J013072N20;Manual Curation=July 26%2C 2018;Literature_PMID=11090207,DOI:10.1016/j.plantsci.2009.07.012;Oryzabase=947;Expression=AK066558;TENOR=Os12t0281300-01;KEGG=Os12t0281300-01
Chr12	irgsp1_rep	five_prime_UTR	10611771	10611917	.	-	.	Parent=Os12t0281300-01
Chr12	irgsp1_rep	CDS	10610827	10611770	.	-	0	Parent=Os12t0281300-01
Chr12	irgsp1_rep	CDS	10607519	10609361	.	-	1	Parent=Os12t0281300-01
Chr12	irgsp1_rep	three_prime_UTR	10606417	10607518	.	-	.	Parent=Os12t0281300-01
Chr12	irgsp1_rep	mRNA	10606359	10611914	.	-	.	ID=Os12t0281300-02;Name=Os12t0281300-02;Locus_id=Os12g0281300;RAP-DB Gene Symbol Synonym(s)=Pi-ta;RAP-DB Gene Name Synonym(s)=Pyricularia oryzae resistance-ta;CGSNL Gene Symbol=PITA;CGSNL Gene Name=PYRICULARIA ORYZAE RESISTANCE TA;Oryzabase Gene Symbol Synonym(s)=Pita%2C Pita (sl%2C Pi4a%2C Pi-ta)%2C Pita2%2C Pi4a%2C Pita%2C Pi-ta%2C Pita-2%2C Pi-ta2%2C Pi-4(t)%2C Pi-4%2C Pi4%2C Pi-4a(t)%2C OsTRXh6%2C TRXh6%2C OsTrx30;Oryzabase Gene Name Synonym(s)=Pyricularia oryzae resistance-ta%2C Magnaporthe grisea resistance-ta%2C Blast resistance ta%2C Thioredoxin H-type 6%2C H-type Thioredoxin 6%2C Thioredoxin 30;Note=Pi-ta protein belonging to the nucleotide-binding site leucine-rich repeat (NBS-LRR) class%2C Rice blast resistance (Nipponbare: susceptible);Transcript_evidence=AK071926;ORF_evidence=Q2QTV8;GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: ADP binding (GO:0043531);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),Leucine-rich repeat domain superfamily (IPR032675),Thioredoxin-like superfamily (IPR036249),NB-ARC (IPR002182),Thioredoxin domain (IPR013766);NIAS_FLcDNA=J013072F24;Manual Curation=July 26%2C 2018;Literature_PMID=DOI:10.1016/j.plantsci.2009.07.012;Oryzabase=947;TENOR=Os12t0281300-02
Chr12	irgsp1_rep	five_prime_UTR	10611771	10611914	.	-	.	Parent=Os12t0281300-02
Chr12	irgsp1_rep	CDS	10610827	10611770	.	-	0	Parent=Os12t0281300-02
Chr12	irgsp1_rep	CDS	10607643	10609361	.	-	1	Parent=Os12t0281300-02
Chr12	irgsp1_rep	CDS	10607427	10607470	.	-	1	Parent=Os12t0281300-02
Chr12	irgsp1_rep	CDS	10606560	10606954	.	-	2	Parent=Os12t0281300-02
Chr12	irgsp1_rep	three_prime_UTR	10606359	10606559	.	-	.	Parent=Os12t0281300-02
Chr12	irgsp1_rep	mRNA	10606376	10611137	.	-	.	ID=Os12t0281300-03;Name=Os12t0281300-03;Locus_id=Os12g0281300;RAP-DB Gene Symbol Synonym(s)=Pi-ta;RAP-DB Gene Name Synonym(s)=Pyricularia oryzae resistance-ta;CGSNL Gene Symbol=PITA;CGSNL Gene Name=PYRICULARIA ORYZAE RESISTANCE TA;Oryzabase Gene Symbol Synonym(s)=Pita%2C Pita (sl%2C Pi4a%2C Pi-ta)%2C Pita2%2C Pi4a%2C Pita%2C Pi-ta%2C Pita-2%2C Pi-ta2%2C Pi-4(t)%2C Pi-4%2C Pi4%2C Pi-4a(t)%2C OsTRXh6%2C TRXh6%2C OsTrx30;Oryzabase Gene Name Synonym(s)=Pyricularia oryzae resistance-ta%2C Magnaporthe grisea resistance-ta%2C Blast resistance ta%2C Thioredoxin H-type 6%2C H-type Thioredoxin 6%2C Thioredoxin 30;Note=Pi-ta protein belonging to the nucleotide-binding site leucine-rich repeat (NBS-LRR) class%2C Rice blast resistance (Nipponbare: susceptible);Transcript_evidence=AK067534;ORF_evidence=A0A0P0Y947;GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: ADP binding (GO:0043531);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),Leucine-rich repeat domain superfamily (IPR032675),Thioredoxin-like superfamily (IPR036249),NB-ARC (IPR002182),Thioredoxin domain (IPR013766);NIAS_FLcDNA=J013112P19;Manual Curation=July 26%2C 2018;Literature_PMID=DOI:10.1016/j.plantsci.2009.07.012;Oryzabase=947;TENOR=Os12t0281300-03
Chr12	irgsp1_rep	five_prime_UTR	10611129	10611137	.	-	.	Parent=Os12t0281300-03
Chr12	irgsp1_rep	CDS	10610827	10611128	.	-	0	Parent=Os12t0281300-03
Chr12	irgsp1_rep	CDS	10607643	10609361	.	-	1	Parent=Os12t0281300-03
Chr12	irgsp1_rep	CDS	10607427	10607470	.	-	1	Parent=Os12t0281300-03
Chr12	irgsp1_rep	CDS	10606560	10606954	.	-	2	Parent=Os12t0281300-03
Chr12	irgsp1_rep	three_prime_UTR	10606376	10606559	.	-	.	Parent=Os12t0281300-03
Chr12	irgsp1_rep	mRNA	10608218	10611101	.	+	.	ID=Os12t0281375-00;Name=Os12t0281375-00;Locus_id=Os12g0281375;Note=Non-protein coding transcript.;Transcript_evidence=tplb0061j05 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os12t0281375-00
Chr12	irgsp1_rep	exon	10608218	10609382	.	+	.	Parent=Os12t0281375-00
Chr12	irgsp1_rep	exon	10610855	10611101	.	+	.	Parent=Os12t0281375-00
Chr12	irgsp1_rep	mRNA	10612450	10614241	.	-	.	ID=Os12t0281450-00;Name=Os12t0281450-00;Locus_id=Os12g0281450;Note=Hypothetical gene.;Transcript_evidence=CT835593 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os12t0281450-00;KEGG=Os12t0281450-00
Chr12	irgsp1_rep	five_prime_UTR	10613868	10614241	.	-	.	Parent=Os12t0281450-00
Chr12	irgsp1_rep	five_prime_UTR	10612693	10613648	.	-	.	Parent=Os12t0281450-00
Chr12	irgsp1_rep	CDS	10612450	10612692	.	-	0	Parent=Os12t0281450-00
Chr12	irgsp1_rep	mRNA	10624037	10633368	.	+	.	ID=Os12t0281600-01;Name=Os12t0281600-01;Locus_id=Os12g0281600;CGSNL Gene Symbol=PI42;CGSNL Gene Name=PYRICULARIA ORYZAE RESISTANCE 42;Oryzabase Gene Symbol Synonym(s)=Pi42(t)%2C Pi-42(t);Oryzabase Gene Name Synonym(s)=Pyricularia grisea resistance 42%2C Magnaporthe grisea resistance 42%2C Blast resistance 42;Note=NB-ARC domain containing protein.;Transcript_evidence=AK072326 (DDBJ%2C Best hit);ORF_evidence=B8BP46 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J023026M23;Oryzabase=8861;Expression=AK072326;TENOR=Os12t0281600-01;KEGG=Os12t0281600-01
Chr12	irgsp1_rep	five_prime_UTR	10624037	10624067	.	+	.	Parent=Os12t0281600-01
Chr12	irgsp1_rep	CDS	10624068	10624909	.	+	0	Parent=Os12t0281600-01
Chr12	irgsp1_rep	CDS	10630848	10633356	.	+	1	Parent=Os12t0281600-01
Chr12	irgsp1_rep	three_prime_UTR	10633357	10633368	.	+	.	Parent=Os12t0281600-01
Chr12	irgsp1_rep	mRNA	10624040	10635373	.	+	.	ID=Os12t0281600-02;Name=Os12t0281600-02;Locus_id=Os12g0281600;CGSNL Gene Symbol=PI42;CGSNL Gene Name=PYRICULARIA ORYZAE RESISTANCE 42;Oryzabase Gene Symbol Synonym(s)=Pi42(t)%2C Pi-42(t);Oryzabase Gene Name Synonym(s)=Pyricularia grisea resistance 42%2C Magnaporthe grisea resistance 42%2C Blast resistance 42;Note=Hypothetical conserved gene.;Transcript_evidence=AK289025 (DDBJ%2C Best hit);ORF_evidence=NP_001066575.1 (RefSeq);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J090090I18;Oryzabase=8861;TENOR=Os12t0281600-02;KEGG=Os12t0281600-02
Chr12	irgsp1_rep	five_prime_UTR	10624040	10624067	.	+	.	Parent=Os12t0281600-02
Chr12	irgsp1_rep	CDS	10624068	10624909	.	+	0	Parent=Os12t0281600-02
Chr12	irgsp1_rep	CDS	10630848	10633290	.	+	1	Parent=Os12t0281600-02
Chr12	irgsp1_rep	CDS	10634853	10634858	.	+	0	Parent=Os12t0281600-02
Chr12	irgsp1_rep	three_prime_UTR	10634859	10635373	.	+	.	Parent=Os12t0281600-02
Chr12	irgsp1_rep	mRNA	10644798	10645254	.	-	.	ID=Os12t0281966-00;Name=Os12t0281966-00;Locus_id=Os12g0281966;Note=Non-protein coding transcript.;Transcript_evidence=CT835531 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os12t0281966-00
Chr12	irgsp1_rep	exon	10644798	10645254	.	-	.	Parent=Os12t0281966-00
Chr12	irgsp1_rep	mRNA	10651961	10653342	.	+	.	ID=Os12t0282000-01;Name=Os12t0282000-01;Locus_id=Os12g0282000;CGSNL Gene Symbol=MIR;CGSNL Gene Name=MITOCHONDRIAL IRON-REGULATED GENE;Oryzabase Gene Symbol Synonym(s)=OsMIR;Oryzabase Gene Name Synonym(s)=mitochondrial iron-regulated gene;Note=Conserved hypothetical protein.;Transcript_evidence=AK103636 (DDBJ%2C Best hit);ORF_evidence=A6N1R8 (UniProt);NIAS_FLcDNA=J033134F01;Oryzabase=11138;Expression=AK103636;TENOR=Os12t0282000-01;KEGG=Os12t0282000-01
Chr12	irgsp1_rep	five_prime_UTR	10651961	10652055	.	+	.	Parent=Os12t0282000-01
Chr12	irgsp1_rep	five_prime_UTR	10652144	10652248	.	+	.	Parent=Os12t0282000-01
Chr12	irgsp1_rep	five_prime_UTR	10652487	10652507	.	+	.	Parent=Os12t0282000-01
Chr12	irgsp1_rep	CDS	10652508	10653002	.	+	0	Parent=Os12t0282000-01
Chr12	irgsp1_rep	three_prime_UTR	10653003	10653342	.	+	.	Parent=Os12t0282000-01
Chr12	irgsp1_rep	mRNA	10669458	10671966	.	+	.	ID=Os12t0282400-01;Name=Os12t0282400-01;Locus_id=Os12g0282400;Note=Conserved hypothetical protein.;Transcript_evidence=AK112086 (DDBJ%2C Best hit);ORF_evidence=NP_001047078.2 (RefSeq);NIAS_FLcDNA=002-103-D03;TENOR=Os12t0282400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	10669458	10670109	.	+	.	Parent=Os12t0282400-01
Chr12	irgsp1_rep	CDS	10670110	10670427	.	+	0	Parent=Os12t0282400-01
Chr12	irgsp1_rep	three_prime_UTR	10670428	10670625	.	+	.	Parent=Os12t0282400-01
Chr12	irgsp1_rep	three_prime_UTR	10670694	10670786	.	+	.	Parent=Os12t0282400-01
Chr12	irgsp1_rep	three_prime_UTR	10670885	10670989	.	+	.	Parent=Os12t0282400-01
Chr12	irgsp1_rep	three_prime_UTR	10671084	10671542	.	+	.	Parent=Os12t0282400-01
Chr12	irgsp1_rep	three_prime_UTR	10671636	10671966	.	+	.	Parent=Os12t0282400-01
Chr12	irgsp1_rep	mRNA	10703640	10705631	.	+	.	ID=Os12t0282766-00;Name=Os12t0282766-00;Locus_id=Os12g0282766;Note=Conserved hypothetical protein.;Transcript_evidence=EU972739 (DDBJ);ORF_evidence=F2CYX6 (UniProt);TENOR=Os12t0282766-00
Chr12	irgsp1_rep	five_prime_UTR	10703640	10703729	.	+	.	Parent=Os12t0282766-00
Chr12	irgsp1_rep	CDS	10703730	10704033	.	+	0	Parent=Os12t0282766-00
Chr12	irgsp1_rep	CDS	10705495	10705532	.	+	2	Parent=Os12t0282766-00
Chr12	irgsp1_rep	three_prime_UTR	10705533	10705631	.	+	.	Parent=Os12t0282766-00
Chr12	irgsp1_rep	mRNA	10711964	10717815	.	-	.	ID=Os12t0283100-01;Name=Os12t0283100-01;Locus_id=Os12g0283100;CGSNL Gene Symbol=NTP13;CGSNL Gene Name=NUCLEOTIDYL TRANSFERASE PROTEIN 13;Oryzabase Gene Symbol Synonym(s)=OsNTP13;Oryzabase Gene Name Synonym(s)=nucleotidyl transferase protein 13;Note=Nucleotidyltransferase domain containing protein.;Transcript_evidence=AK109925 (DDBJ%2C Best hit);ORF_evidence=B8BP51 (UniProt);GO=Molecular Function: nucleotidyltransferase activity (GO:0016779);InterPro=PAP/25A-associated (IPR002058),Nucleotidyl transferase domain (IPR002934);NIAS_FLcDNA=002-151-E12;Oryzabase=21895;Expression=AK109925;TENOR=Os12t0283100-01;KEGG=Os12t0283100-01
Chr12	irgsp1_rep	five_prime_UTR	10717773	10717815	.	-	.	Parent=Os12t0283100-01
Chr12	irgsp1_rep	CDS	10717509	10717772	.	-	0	Parent=Os12t0283100-01
Chr12	irgsp1_rep	CDS	10716358	10716543	.	-	0	Parent=Os12t0283100-01
Chr12	irgsp1_rep	CDS	10715986	10716078	.	-	0	Parent=Os12t0283100-01
Chr12	irgsp1_rep	CDS	10715673	10715855	.	-	0	Parent=Os12t0283100-01
Chr12	irgsp1_rep	CDS	10715401	10715503	.	-	0	Parent=Os12t0283100-01
Chr12	irgsp1_rep	CDS	10715163	10715315	.	-	2	Parent=Os12t0283100-01
Chr12	irgsp1_rep	CDS	10713864	10714936	.	-	2	Parent=Os12t0283100-01
Chr12	irgsp1_rep	CDS	10713601	10713756	.	-	0	Parent=Os12t0283100-01
Chr12	irgsp1_rep	CDS	10712550	10713241	.	-	0	Parent=Os12t0283100-01
Chr12	irgsp1_rep	CDS	10712341	10712407	.	-	1	Parent=Os12t0283100-01
Chr12	irgsp1_rep	three_prime_UTR	10711964	10712340	.	-	.	Parent=Os12t0283100-01
Chr12	irgsp1_rep	mRNA	10724195	10725087	.	+	.	ID=Os12t0283300-01;Name=Os12t0283300-01;Locus_id=Os12g0283300;Note=Conserved hypothetical protein.;Transcript_evidence=AK240878 (DDBJ%2C Best hit);ORF_evidence=NP_001176904.1 (RefSeq);NIAS_FLcDNA=J065027C10;TENOR=Os12t0283300-01;KEGG=Os12t0283300-01
Chr12	irgsp1_rep	CDS	10724195	10724337	.	+	0	Parent=Os12t0283300-01
Chr12	irgsp1_rep	CDS	10724419	10724719	.	+	1	Parent=Os12t0283300-01
Chr12	irgsp1_rep	CDS	10724810	10725010	.	+	0	Parent=Os12t0283300-01
Chr12	irgsp1_rep	three_prime_UTR	10725011	10725087	.	+	.	Parent=Os12t0283300-01
Chr12	irgsp1_rep	mRNA	10732280	10733415	.	+	.	ID=Os12t0283400-01;Name=Os12t0283400-01;Locus_id=Os12g0283400;Oryzabase Gene Symbol Synonym(s)=PMEI;Oryzabase Gene Name Synonym(s)=PECTIN METHYLESTERASE INHIBITOR PROTEIN;Note=Pectinesterase inhibitor domain containing protein.;Transcript_evidence=AK110798 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);NIAS_FLcDNA=002-171-E01;Oryzabase=22577;Expression=AK110798;TENOR=Os12t0283400-01;KEGG=Os12t0283400-01
Chr12	irgsp1_rep	five_prime_UTR	10732280	10732423	.	+	.	Parent=Os12t0283400-01
Chr12	irgsp1_rep	CDS	10732424	10733110	.	+	0	Parent=Os12t0283400-01
Chr12	irgsp1_rep	three_prime_UTR	10733111	10733415	.	+	.	Parent=Os12t0283400-01
Chr12	irgsp1_rep	mRNA	10756637	10759160	.	-	.	ID=Os12t0283800-01;Name=Os12t0283800-01;Locus_id=Os12g0283800;Note=Protein of unknown function DUF3411 domain containing protein.;Transcript_evidence=AK060975 (DDBJ%2C Best hit);ORF_evidence=Q2QTT0 (UniProt);InterPro=Protein of unknown function DUF3411 (IPR021825);NIAS_FLcDNA=006-202-E05;Expression=AK060975;TENOR=Os12t0283800-01;KEGG=Os12t0283800-01
Chr12	irgsp1_rep	CDS	10758880	10759160	.	-	0	Parent=Os12t0283800-01
Chr12	irgsp1_rep	CDS	10758597	10758761	.	-	1	Parent=Os12t0283800-01
Chr12	irgsp1_rep	CDS	10757041	10757305	.	-	1	Parent=Os12t0283800-01
Chr12	irgsp1_rep	three_prime_UTR	10756637	10757040	.	-	.	Parent=Os12t0283800-01
Chr12	irgsp1_rep	mRNA	10756704	10759063	.	-	.	ID=Os12t0283800-02;Name=Os12t0283800-02;Locus_id=Os12g0283800;Note=Similar to predicted protein.;Transcript_evidence=AK104036 (DDBJ%2C Best hit);ORF_evidence=Q2QTT0 (UniProt);InterPro=Protein of unknown function DUF3411 (IPR021825);NIAS_FLcDNA=001-020-G12;Expression=AK104036;TENOR=Os12t0283800-02;KEGG=Os12t0283800-02
Chr12	irgsp1_rep	five_prime_UTR	10759062	10759063	.	-	.	Parent=Os12t0283800-02
Chr12	irgsp1_rep	CDS	10758880	10759061	.	-	0	Parent=Os12t0283800-02
Chr12	irgsp1_rep	CDS	10758597	10758761	.	-	1	Parent=Os12t0283800-02
Chr12	irgsp1_rep	CDS	10757041	10757305	.	-	1	Parent=Os12t0283800-02
Chr12	irgsp1_rep	three_prime_UTR	10756704	10757040	.	-	.	Parent=Os12t0283800-02
Chr12	irgsp1_rep	mRNA	10766538	10768960	.	+	.	ID=Os12t0283900-01;Name=Os12t0283900-01;Locus_id=Os12g0283900;Note=Heat shock protein DnaJ%2C conserved site domain containing protein.;Transcript_evidence=AK106931 (DDBJ%2C Best hit);ORF_evidence=XP_002873660.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=002-119-C03;Expression=AK106931;TENOR=Os12t0283900-01;KEGG=Os12t0283900-01
Chr12	irgsp1_rep	five_prime_UTR	10766538	10766641	.	+	.	Parent=Os12t0283900-01
Chr12	irgsp1_rep	CDS	10766642	10766791	.	+	0	Parent=Os12t0283900-01
Chr12	irgsp1_rep	CDS	10766886	10768763	.	+	0	Parent=Os12t0283900-01
Chr12	irgsp1_rep	three_prime_UTR	10768764	10768960	.	+	.	Parent=Os12t0283900-01
Chr12	irgsp1_rep	mRNA	10766624	10768939	.	+	.	ID=Os12t0283900-02;Name=Os12t0283900-02;Locus_id=Os12g0283900;Note=Heat shock protein DnaJ%2C conserved site domain containing protein.;Transcript_evidence=AK099847 (DDBJ%2C Best hit);ORF_evidence=XP_002873660.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013109H18;Expression=AK099847;TENOR=Os12t0283900-02;KEGG=Os12t0283900-02
Chr12	irgsp1_rep	five_prime_UTR	10766624	10766641	.	+	.	Parent=Os12t0283900-02
Chr12	irgsp1_rep	CDS	10766642	10766791	.	+	0	Parent=Os12t0283900-02
Chr12	irgsp1_rep	CDS	10766886	10768763	.	+	0	Parent=Os12t0283900-02
Chr12	irgsp1_rep	three_prime_UTR	10768764	10768939	.	+	.	Parent=Os12t0283900-02
Chr12	irgsp1_rep	mRNA	10771046	10775332	.	+	.	ID=Os12t0284000-01;Name=Os12t0284000-01;Locus_id=Os12g0284000;Note=Regulator of Chromosome condensation%2C RCC1 domain containing protein.;Transcript_evidence=AK098904 (DDBJ%2C Best hit),AK065041 (DDBJ%2C Best hit);ORF_evidence=NP_974362.1 (RefSeq);InterPro=Regulator of Chromosome condensation%2C RCC1 (IPR000408),Regulator of Chromosome condensation/beta-lactamase-inhibitor protein II (IPR009091);NIAS_FLcDNA=J013002D05,J013001H18;Expression=AK098904;TENOR=Os12t0284000-01;KEGG=Os12t0284000-01
Chr12	irgsp1_rep	five_prime_UTR	10771046	10771270	.	+	.	Parent=Os12t0284000-01
Chr12	irgsp1_rep	five_prime_UTR	10772247	10772345	.	+	.	Parent=Os12t0284000-01
Chr12	irgsp1_rep	CDS	10772346	10772571	.	+	0	Parent=Os12t0284000-01
Chr12	irgsp1_rep	CDS	10772645	10772996	.	+	2	Parent=Os12t0284000-01
Chr12	irgsp1_rep	CDS	10773086	10773487	.	+	1	Parent=Os12t0284000-01
Chr12	irgsp1_rep	CDS	10773919	10774297	.	+	1	Parent=Os12t0284000-01
Chr12	irgsp1_rep	CDS	10774780	10775025	.	+	0	Parent=Os12t0284000-01
Chr12	irgsp1_rep	three_prime_UTR	10775026	10775332	.	+	.	Parent=Os12t0284000-01
Chr12	irgsp1_rep	mRNA	10771862	10775265	.	+	.	ID=Os12t0284000-02;Name=Os12t0284000-02;Locus_id=Os12g0284000;Note=Similar to predicted protein.;Transcript_evidence=AK065747 (DDBJ%2C Best hit);ORF_evidence=NP_974362.1 (RefSeq);NIAS_FLcDNA=J013038I20;Expression=AK065747;TENOR=Os12t0284000-02;KEGG=Os12t0284000-02
Chr12	irgsp1_rep	five_prime_UTR	10771862	10772345	.	+	.	Parent=Os12t0284000-02
Chr12	irgsp1_rep	CDS	10772346	10772753	.	+	0	Parent=Os12t0284000-02
Chr12	irgsp1_rep	three_prime_UTR	10772754	10772996	.	+	.	Parent=Os12t0284000-02
Chr12	irgsp1_rep	three_prime_UTR	10773086	10773487	.	+	.	Parent=Os12t0284000-02
Chr12	irgsp1_rep	three_prime_UTR	10773919	10774297	.	+	.	Parent=Os12t0284000-02
Chr12	irgsp1_rep	three_prime_UTR	10774780	10775265	.	+	.	Parent=Os12t0284000-02
Chr12	irgsp1_rep	mRNA	10772245	10775430	.	+	.	ID=Os12t0284000-03;Name=Os12t0284000-03;Locus_id=Os12g0284000;Note=Regulator of Chromosome condensation%2C RCC1 domain containing protein.;Transcript_evidence=AK065992 (DDBJ%2C Best hit);ORF_evidence=NP_974362.1 (RefSeq);InterPro=Regulator of Chromosome condensation%2C RCC1 (IPR000408),Regulator of Chromosome condensation/beta-lactamase-inhibitor protein II (IPR009091);NIAS_FLcDNA=J013049P07;Expression=AK065992;TENOR=Os12t0284000-03;KEGG=Os12t0284000-03
Chr12	irgsp1_rep	five_prime_UTR	10772245	10772345	.	+	.	Parent=Os12t0284000-03
Chr12	irgsp1_rep	CDS	10772346	10772571	.	+	0	Parent=Os12t0284000-03
Chr12	irgsp1_rep	CDS	10772645	10772996	.	+	2	Parent=Os12t0284000-03
Chr12	irgsp1_rep	CDS	10773086	10773487	.	+	1	Parent=Os12t0284000-03
Chr12	irgsp1_rep	CDS	10773919	10774297	.	+	1	Parent=Os12t0284000-03
Chr12	irgsp1_rep	CDS	10774780	10775025	.	+	0	Parent=Os12t0284000-03
Chr12	irgsp1_rep	three_prime_UTR	10775026	10775430	.	+	.	Parent=Os12t0284000-03
Chr12	irgsp1_rep	mRNA	10773107	10775332	.	+	.	ID=Os12t0284000-04;Name=Os12t0284000-04;Locus_id=Os12g0284000;Note=Hypothetical conserved gene.;Transcript_evidence=AK062069 (DDBJ%2C Best hit);ORF_evidence=B8BP53 (UniProt);InterPro=Regulator of Chromosome condensation%2C RCC1 (IPR000408),Regulator of Chromosome condensation/beta-lactamase-inhibitor protein II (IPR009091);NIAS_FLcDNA=001-044-E02;Expression=AK062069;TENOR=Os12t0284000-04;KEGG=Os12t0284000-04 (EC:6.3.2.19)
Chr12	irgsp1_rep	five_prime_UTR	10773107	10773107	.	+	.	Parent=Os12t0284000-04
Chr12	irgsp1_rep	CDS	10773108	10773487	.	+	0	Parent=Os12t0284000-04
Chr12	irgsp1_rep	CDS	10773919	10774297	.	+	1	Parent=Os12t0284000-04
Chr12	irgsp1_rep	CDS	10774780	10775025	.	+	0	Parent=Os12t0284000-04
Chr12	irgsp1_rep	three_prime_UTR	10775026	10775332	.	+	.	Parent=Os12t0284000-04
Chr12	irgsp1_rep	mRNA	10776951	10777374	.	-	.	ID=Os12t0284250-00;Name=Os12t0284250-00;Locus_id=Os12g0284250;Note=Hypothetical gene.;Transcript_evidence=AK062879 (DDBJ%2C Secondary hit);ORF_evidence=GeneMark;Expression=AK062879;TENOR=Os12t0284250-00;KEGG=Os12t0284250-00
Chr12	irgsp1_rep	CDS	10777131	10777374	.	-	0	Parent=Os12t0284250-00
Chr12	irgsp1_rep	CDS	10777094	10777119	.	-	2	Parent=Os12t0284250-00
Chr12	irgsp1_rep	three_prime_UTR	10776951	10777093	.	-	.	Parent=Os12t0284250-00
Chr12	irgsp1_rep	mRNA	10790598	10791269	.	-	.	ID=Os12t0284525-00;Name=Os12t0284525-00;Locus_id=Os12g0284525;Note=Conserved hypothetical protein.;Transcript_evidence=BT086332 (DDBJ);ORF_evidence=Q2QTS5 (UniProt);TENOR=Os12t0284525-00
Chr12	irgsp1_rep	five_prime_UTR	10791069	10791269	.	-	.	Parent=Os12t0284525-00
Chr12	irgsp1_rep	CDS	10790598	10791068	.	-	0	Parent=Os12t0284525-00
Chr12	irgsp1_rep	mRNA	10799671	10802198	.	+	.	ID=Os12t0284700-00;Name=Os12t0284700-00;Locus_id=Os12g0284700;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QTS3 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);TENOR=Os12t0284700-00
Chr12	irgsp1_rep	CDS	10799671	10799846	.	+	0	Parent=Os12t0284700-00
Chr12	irgsp1_rep	CDS	10799951	10800148	.	+	1	Parent=Os12t0284700-00
Chr12	irgsp1_rep	CDS	10800596	10801628	.	+	1	Parent=Os12t0284700-00
Chr12	irgsp1_rep	CDS	10801845	10802198	.	+	0	Parent=Os12t0284700-00
Chr12	irgsp1_rep	mRNA	10804334	10805254	.	+	.	ID=Os12t0284800-00;Name=Os12t0284800-00;Locus_id=Os12g0284800;Note=Hypothetical gene.;Transcript_evidence=CT835533 (DDBJ%2C Best hit);ORF_evidence=NP_001066583.1 (RefSeq);TENOR=Os12t0284800-00;KEGG=Os12t0284800-00
Chr12	irgsp1_rep	five_prime_UTR	10804334	10804406	.	+	.	Parent=Os12t0284800-00
Chr12	irgsp1_rep	CDS	10804407	10804616	.	+	0	Parent=Os12t0284800-00
Chr12	irgsp1_rep	three_prime_UTR	10804617	10804742	.	+	.	Parent=Os12t0284800-00
Chr12	irgsp1_rep	three_prime_UTR	10804820	10805254	.	+	.	Parent=Os12t0284800-00
Chr12	irgsp1_rep	mRNA	10807133	10810180	.	+	.	ID=Os12t0284850-01;Name=Os12t0284850-01;Locus_id=Os12g0284850;Note=Hypothetical gene.;Transcript_evidence=AK241308 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065141A05;TENOR=Os12t0284850-01;KEGG=Os12t0284850-01
Chr12	irgsp1_rep	five_prime_UTR	10807133	10807553	.	+	.	Parent=Os12t0284850-01
Chr12	irgsp1_rep	five_prime_UTR	10808487	10808584	.	+	.	Parent=Os12t0284850-01
Chr12	irgsp1_rep	five_prime_UTR	10808667	10808779	.	+	.	Parent=Os12t0284850-01
Chr12	irgsp1_rep	five_prime_UTR	10808914	10808924	.	+	.	Parent=Os12t0284850-01
Chr12	irgsp1_rep	CDS	10808925	10809038	.	+	0	Parent=Os12t0284850-01
Chr12	irgsp1_rep	CDS	10809176	10809442	.	+	0	Parent=Os12t0284850-01
Chr12	irgsp1_rep	three_prime_UTR	10809443	10809541	.	+	.	Parent=Os12t0284850-01
Chr12	irgsp1_rep	three_prime_UTR	10809647	10810180	.	+	.	Parent=Os12t0284850-01
Chr12	irgsp1_rep	mRNA	10822535	10826595	.	+	.	ID=Os12t0285100-01;Name=Os12t0285100-01;Locus_id=Os12g0285100;CGSNL Gene Symbol=PTR;CGSNL Gene Name=PI-TA RESISTANCE;Oryzabase Gene Symbol Synonym(s)=Ptr%2C OsPtr%2C Ptr(t);Oryzabase Gene Name Synonym(s)=Pi-ta resistance;Note=Hypothetical conserved gene.;Transcript_evidence=AK100362 (DDBJ%2C Best hit);ORF_evidence=A2ZJL9 (UniProt);NIAS_FLcDNA=J023083M12;Oryzabase=23458;Expression=AK100362;TENOR=Os12t0285100-01;KEGG=Os12t0285100-01
Chr12	irgsp1_rep	five_prime_UTR	10822535	10822950	.	+	.	Parent=Os12t0285100-01
Chr12	irgsp1_rep	CDS	10822951	10823187	.	+	0	Parent=Os12t0285100-01
Chr12	irgsp1_rep	three_prime_UTR	10823188	10826595	.	+	.	Parent=Os12t0285100-01
Chr12	irgsp1_rep	mRNA	10822540	10833577	.	+	.	ID=Os12t0285100-02;Name=Os12t0285100-02;Locus_id=Os12g0285100;RAP-DB Gene Symbol Synonym(s)=Ptr;Note=Atypical resistance protein with Armadillo repeats;Transcript_evidence=AK103843 (DDBJ%2C Best hit);ORF_evidence=Q0INW2;InterPro=Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033148J12;Manual Curation=February 19%2C 2020;Literature_PMID=29795191;TENOR=Os12t0285100-02;Subcellular location=cellular_component (GO:0005575) [whole cell]
Chr12	irgsp1_rep	five_prime_UTR	10822540	10823043	.	+	.	Parent=Os12t0285100-02
Chr12	irgsp1_rep	five_prime_UTR	10823342	10823586	.	+	.	Parent=Os12t0285100-02
Chr12	irgsp1_rep	five_prime_UTR	10824065	10824086	.	+	.	Parent=Os12t0285100-02
Chr12	irgsp1_rep	CDS	10824087	10824325	.	+	0	Parent=Os12t0285100-02
Chr12	irgsp1_rep	CDS	10830812	10832777	.	+	1	Parent=Os12t0285100-02
Chr12	irgsp1_rep	CDS	10833093	10833494	.	+	0	Parent=Os12t0285100-02
Chr12	irgsp1_rep	three_prime_UTR	10833495	10833577	.	+	.	Parent=Os12t0285100-02
Chr12	irgsp1_rep	mRNA	10822544	10833618	.	+	.	ID=Os12t0285100-03;Name=Os12t0285100-03;Locus_id=Os12g0285100;RAP-DB Gene Symbol Synonym(s)=Ptr;Note=Atypical resistance protein with Armadillo repeats;Transcript_evidence=AK121318 (DDBJ%2C Best hit);ORF_evidence=Q0INW2;InterPro=Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023113P04;Manual Curation=February 19%2C 2020;Literature_PMID=29795191;TENOR=Os12t0285100-03;Subcellular location=cellular_component (GO:0005575) [whole cell]
Chr12	irgsp1_rep	five_prime_UTR	10822544	10823043	.	+	.	Parent=Os12t0285100-03
Chr12	irgsp1_rep	five_prime_UTR	10823451	10823586	.	+	.	Parent=Os12t0285100-03
Chr12	irgsp1_rep	five_prime_UTR	10824065	10824086	.	+	.	Parent=Os12t0285100-03
Chr12	irgsp1_rep	CDS	10824087	10824325	.	+	0	Parent=Os12t0285100-03
Chr12	irgsp1_rep	CDS	10830812	10832777	.	+	1	Parent=Os12t0285100-03
Chr12	irgsp1_rep	CDS	10833093	10833494	.	+	0	Parent=Os12t0285100-03
Chr12	irgsp1_rep	three_prime_UTR	10833495	10833618	.	+	.	Parent=Os12t0285100-03
Chr12	irgsp1_rep	mRNA	10831043	10833579	.	+	.	ID=Os12t0285100-04;Name=Os12t0285100-04;Locus_id=Os12g0285100;CGSNL Gene Symbol=PTR;CGSNL Gene Name=PI-TA RESISTANCE;Oryzabase Gene Symbol Synonym(s)=Ptr%2C OsPtr%2C Ptr(t);Oryzabase Gene Name Synonym(s)=Pi-ta resistance;Note=Hypothetical conserved gene.;Transcript_evidence=AK072022 (DDBJ%2C Best hit);ORF_evidence=A2ZJL9 (UniProt);NIAS_FLcDNA=J013105F11;Oryzabase=23458;Expression=AK072022;TENOR=Os12t0285100-04;KEGG=Os12t0285100-04
Chr12	irgsp1_rep	five_prime_UTR	10831043	10831043	.	+	.	Parent=Os12t0285100-04
Chr12	irgsp1_rep	CDS	10831044	10832777	.	+	0	Parent=Os12t0285100-04
Chr12	irgsp1_rep	CDS	10833093	10833494	.	+	0	Parent=Os12t0285100-04
Chr12	irgsp1_rep	three_prime_UTR	10833495	10833579	.	+	.	Parent=Os12t0285100-04
Chr12	irgsp1_rep	mRNA	10822534	10833768	.	+	.	ID=Os12t0285100-05;Name=Os12t0285100-05;Locus_id=Os12g0285100;RAP-DB Gene Symbol Synonym(s)=Ptr;Note=Atypical resistance protein with Armadillo repeats%2C Broad-spectrum blast resistance;Transcript_evidence=MG385190 (YT16),Inferred from literature;ORF_evidence=A0A2U9K4Z4;InterPro=Armadillo-type fold (IPR016024);Manual Curation=February 19%2C 2020;Literature_PMID=29795191;Subcellular location=cytoplasm (GO:0005737)
Chr12	irgsp1_rep	five_prime_UTR	10822534	10822942	.	+	.	Parent=Os12t0285100-05
Chr12	irgsp1_rep	CDS	10822943	10823043	.	+	0	Parent=Os12t0285100-05
Chr12	irgsp1_rep	CDS	10824065	10824325	.	+	1	Parent=Os12t0285100-05
Chr12	irgsp1_rep	CDS	10830812	10832777	.	+	1	Parent=Os12t0285100-05
Chr12	irgsp1_rep	CDS	10833093	10833494	.	+	0	Parent=Os12t0285100-05
Chr12	irgsp1_rep	three_prime_UTR	10833495	10833768	.	+	.	Parent=Os12t0285100-05
Chr12	irgsp1_rep	mRNA	10848222	10856270	.	+	.	ID=Os12t0285500-01;Name=Os12t0285500-01;Locus_id=Os12g0285500;Note=Hypothetical conserved gene.;Transcript_evidence=AK243515 (DDBJ%2C Best hit);ORF_evidence=Q0INW1 (UniProt);InterPro=Peptidase C78%2C ubiquitin fold modifier-specific peptidase 1/ 2 (IPR012462);NIAS_FLcDNA=J100075D21;TENOR=Os12t0285500-01;KEGG=Os12t0285500-01
Chr12	irgsp1_rep	five_prime_UTR	10848222	10848320	.	+	.	Parent=Os12t0285500-01
Chr12	irgsp1_rep	CDS	10848321	10848522	.	+	0	Parent=Os12t0285500-01
Chr12	irgsp1_rep	CDS	10848606	10848941	.	+	2	Parent=Os12t0285500-01
Chr12	irgsp1_rep	CDS	10849536	10849786	.	+	2	Parent=Os12t0285500-01
Chr12	irgsp1_rep	CDS	10850205	10850292	.	+	0	Parent=Os12t0285500-01
Chr12	irgsp1_rep	CDS	10850527	10850702	.	+	2	Parent=Os12t0285500-01
Chr12	irgsp1_rep	CDS	10851790	10851880	.	+	0	Parent=Os12t0285500-01
Chr12	irgsp1_rep	CDS	10851991	10852110	.	+	2	Parent=Os12t0285500-01
Chr12	irgsp1_rep	CDS	10852398	10852445	.	+	2	Parent=Os12t0285500-01
Chr12	irgsp1_rep	CDS	10852542	10852618	.	+	2	Parent=Os12t0285500-01
Chr12	irgsp1_rep	CDS	10853544	10853632	.	+	0	Parent=Os12t0285500-01
Chr12	irgsp1_rep	CDS	10853929	10854040	.	+	1	Parent=Os12t0285500-01
Chr12	irgsp1_rep	CDS	10854602	10854704	.	+	0	Parent=Os12t0285500-01
Chr12	irgsp1_rep	CDS	10855871	10856100	.	+	2	Parent=Os12t0285500-01
Chr12	irgsp1_rep	three_prime_UTR	10856101	10856270	.	+	.	Parent=Os12t0285500-01
Chr12	irgsp1_rep	mRNA	10862295	10872221	.	-	.	ID=Os12t0285600-01;Name=Os12t0285600-01;Locus_id=Os12g0285600;Note=Pleckstrin homology-type domain containing protein.;Transcript_evidence=AK069104 (DDBJ%2C Best hit);ORF_evidence=XP_002892731.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Oxysterol-binding protein (IPR000648),Pleckstrin homology domain (IPR001849),Pleckstrin homology-type (IPR011993);NIAS_FLcDNA=J023007B17;Expression=AK069104;TENOR=Os12t0285600-01;KEGG=Os12t0285600-01
Chr12	irgsp1_rep	five_prime_UTR	10872056	10872221	.	-	.	Parent=Os12t0285600-01
Chr12	irgsp1_rep	CDS	10871651	10872055	.	-	0	Parent=Os12t0285600-01
Chr12	irgsp1_rep	CDS	10870923	10871279	.	-	0	Parent=Os12t0285600-01
Chr12	irgsp1_rep	CDS	10870254	10870338	.	-	0	Parent=Os12t0285600-01
Chr12	irgsp1_rep	CDS	10866648	10867096	.	-	2	Parent=Os12t0285600-01
Chr12	irgsp1_rep	CDS	10865792	10865947	.	-	0	Parent=Os12t0285600-01
Chr12	irgsp1_rep	CDS	10865353	10865661	.	-	0	Parent=Os12t0285600-01
Chr12	irgsp1_rep	CDS	10863806	10864150	.	-	0	Parent=Os12t0285600-01
Chr12	irgsp1_rep	CDS	10862644	10862808	.	-	0	Parent=Os12t0285600-01
Chr12	irgsp1_rep	three_prime_UTR	10862295	10862643	.	-	.	Parent=Os12t0285600-01
Chr12	irgsp1_rep	mRNA	10862429	10872065	.	+	.	ID=Os12t0285650-00;Name=Os12t0285650-00;Locus_id=Os12g0285650;Note=Hypothetical protein.;Transcript_evidence=tplb0022l14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0285650-00
Chr12	irgsp1_rep	five_prime_UTR	10862429	10862823	.	+	.	Parent=Os12t0285650-00
Chr12	irgsp1_rep	five_prime_UTR	10863818	10864148	.	+	.	Parent=Os12t0285650-00
Chr12	irgsp1_rep	five_prime_UTR	10865351	10865672	.	+	.	Parent=Os12t0285650-00
Chr12	irgsp1_rep	five_prime_UTR	10865802	10865927	.	+	.	Parent=Os12t0285650-00
Chr12	irgsp1_rep	five_prime_UTR	10866666	10867096	.	+	.	Parent=Os12t0285650-00
Chr12	irgsp1_rep	five_prime_UTR	10870254	10870278	.	+	.	Parent=Os12t0285650-00
Chr12	irgsp1_rep	CDS	10870279	10870336	.	+	0	Parent=Os12t0285650-00
Chr12	irgsp1_rep	CDS	10870919	10871277	.	+	2	Parent=Os12t0285650-00
Chr12	irgsp1_rep	CDS	10871649	10871804	.	+	0	Parent=Os12t0285650-00
Chr12	irgsp1_rep	three_prime_UTR	10871805	10872065	.	+	.	Parent=Os12t0285650-00
Chr12	irgsp1_rep	mRNA	10874698	10877400	.	+	.	ID=Os12t0285700-00;Name=Os12t0285700-00;Locus_id=Os12g0285700;Note=Hypothetical conserved gene.;Transcript_evidence=BT042514 (DDBJ);ORF_evidence=Q2QTR3 (UniProt);TENOR=Os12t0285700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	10874698	10875070	.	+	.	Parent=Os12t0285700-00
Chr12	irgsp1_rep	CDS	10875071	10875099	.	+	0	Parent=Os12t0285700-00
Chr12	irgsp1_rep	CDS	10876809	10877400	.	+	1	Parent=Os12t0285700-00
Chr12	irgsp1_rep	mRNA	10893286	10894106	.	-	.	ID=Os12t0286200-01;Name=Os12t0286200-01;Locus_id=Os12g0286200;Note=Conserved hypothetical protein.;Transcript_evidence=AK070088 (DDBJ%2C Best hit);ORF_evidence=A3CGH5 (UniProt);NIAS_FLcDNA=J023040D23;Expression=AK070088;TENOR=Os12t0286200-01;KEGG=Os12t0286200-01
Chr12	irgsp1_rep	five_prime_UTR	10893978	10894106	.	-	.	Parent=Os12t0286200-01
Chr12	irgsp1_rep	CDS	10893495	10893977	.	-	0	Parent=Os12t0286200-01
Chr12	irgsp1_rep	three_prime_UTR	10893286	10893494	.	-	.	Parent=Os12t0286200-01
Chr12	irgsp1_rep	mRNA	10904277	10909395	.	-	.	ID=Os12t0286300-00;Name=Os12t0286300-00;Locus_id=Os12g0286300;Note=CytoChrome P450 domain containing protein.;Transcript_evidence=EU962161 (DDBJ);ORF_evidence=NP_001050816.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128);TENOR=Os12t0286300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	10909154	10909395	.	-	0	Parent=Os12t0286300-00
Chr12	irgsp1_rep	CDS	10906731	10906968	.	-	1	Parent=Os12t0286300-00
Chr12	irgsp1_rep	three_prime_UTR	10906645	10906730	.	-	.	Parent=Os12t0286300-00
Chr12	irgsp1_rep	three_prime_UTR	10905352	10905539	.	-	.	Parent=Os12t0286300-00
Chr12	irgsp1_rep	three_prime_UTR	10904277	10904465	.	-	.	Parent=Os12t0286300-00
Chr12	irgsp1_rep	mRNA	10935594	10942446	.	-	.	ID=Os12t0286600-01;Name=Os12t0286600-01;Locus_id=Os12g0286600;Oryzabase Gene Symbol Synonym(s)=OsPOP23%2C POP23;Oryzabase Gene Name Synonym(s)=Prolyl Oligopeptidase 23%2C PROLYL OLIGOPEPTIDASE 23;Note=Alpha/beta hydrolase fold-1 domain containing protein.;Transcript_evidence=AK071123 (DDBJ%2C Best hit);ORF_evidence=Q2HUX9 (UniProt);NIAS_FLcDNA=J023081N23;Oryzabase=20031;Expression=AK071123;TENOR=Os12t0286600-01;KEGG=Os12t0286600-01
Chr12	irgsp1_rep	five_prime_UTR	10942299	10942446	.	-	.	Parent=Os12t0286600-01
Chr12	irgsp1_rep	CDS	10941997	10942298	.	-	0	Parent=Os12t0286600-01
Chr12	irgsp1_rep	CDS	10939690	10939726	.	-	1	Parent=Os12t0286600-01
Chr12	irgsp1_rep	CDS	10939362	10939598	.	-	0	Parent=Os12t0286600-01
Chr12	irgsp1_rep	CDS	10939203	10939250	.	-	0	Parent=Os12t0286600-01
Chr12	irgsp1_rep	CDS	10935916	10936425	.	-	0	Parent=Os12t0286600-01
Chr12	irgsp1_rep	three_prime_UTR	10935594	10935915	.	-	.	Parent=Os12t0286600-01
Chr12	irgsp1_rep	mRNA	10959539	10962329	.	+	.	ID=Os12t0287200-01;Name=Os12t0287200-01;Locus_id=Os12g0287200;RAP-DB Gene Symbol Synonym(s)=OsMAGO2%2C MAGO2%2C mago;RAP-DB Gene Name Synonym(s)=mago nashi%2C Mago protein%2C Mago nashi protein%2C rice mago nashi homolog%2C MAGO NASHI 2;Oryzabase Gene Symbol Synonym(s)=mago%2C OsMAGO2%2C MAGO2;Oryzabase Gene Name Synonym(s)=mago nashi%2C Mago protein%2C Mago nashi protein%2C rice mago nashi homolog%2C MAGO NASHI 2;Note=Core subunit of exon junction complex (EJC)%2C Multiple organ development and reproduction;Transcript_evidence=AF338343,KF051008 (Zhonghua 10),AK063847;ORF_evidence=P49030,Q0INV7;GO=Cellular Component: nucleus (GO:0005634);InterPro=Mago nashi protein (IPR004023);NIAS_FLcDNA=001-122-C07,J023149H05;Manual Curation=August 4%2C 2014;Literature_PMID=24416299,24820023,11444698;Oryzabase=15714;TENOR=Os12t0287200-01
Chr12	irgsp1_rep	five_prime_UTR	10959539	10959610	.	+	.	Parent=Os12t0287200-01
Chr12	irgsp1_rep	CDS	10959611	10959850	.	+	0	Parent=Os12t0287200-01
Chr12	irgsp1_rep	CDS	10959985	10960161	.	+	0	Parent=Os12t0287200-01
Chr12	irgsp1_rep	CDS	10962014	10962079	.	+	0	Parent=Os12t0287200-01
Chr12	irgsp1_rep	three_prime_UTR	10962080	10962329	.	+	.	Parent=Os12t0287200-01
Chr12	irgsp1_rep	mRNA	10963391	10972286	.	-	.	ID=Os12t0287300-01;Name=Os12t0287300-01;Locus_id=Os12g0287300;CGSNL Gene Symbol=ISC2;CGSNL Gene Name=IRON-SULFUR CLUSTER PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsISC2;Oryzabase Gene Name Synonym(s)=Iron-sulfur cluster protein 2;Note=Similar to SufS.;Transcript_evidence=AK058791 (DDBJ%2C Best hit);ORF_evidence=NP_172325.2 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferase%2C class V/Cysteine desulfurase (IPR000192),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=001-002-F06;Oryzabase=13417;Expression=AK058791;TENOR=Os12t0287300-01;KEGG=Os12t0287300-01 (EC:2.8.1.7%2C EC:4.4.1.16)
Chr12	irgsp1_rep	five_prime_UTR	10972285	10972286	.	-	.	Parent=Os12t0287300-01
Chr12	irgsp1_rep	CDS	10972204	10972284	.	-	0	Parent=Os12t0287300-01
Chr12	irgsp1_rep	CDS	10971685	10971871	.	-	0	Parent=Os12t0287300-01
Chr12	irgsp1_rep	CDS	10969446	10969591	.	-	2	Parent=Os12t0287300-01
Chr12	irgsp1_rep	CDS	10969280	10969352	.	-	0	Parent=Os12t0287300-01
Chr12	irgsp1_rep	CDS	10969048	10969111	.	-	2	Parent=Os12t0287300-01
Chr12	irgsp1_rep	CDS	10968293	10968392	.	-	1	Parent=Os12t0287300-01
Chr12	irgsp1_rep	CDS	10967961	10968119	.	-	0	Parent=Os12t0287300-01
Chr12	irgsp1_rep	CDS	10963706	10963876	.	-	0	Parent=Os12t0287300-01
Chr12	irgsp1_rep	three_prime_UTR	10963391	10963705	.	-	.	Parent=Os12t0287300-01
Chr12	irgsp1_rep	mRNA	10963340	10971767	.	-	.	ID=Os12t0287300-02;Name=Os12t0287300-02;Locus_id=Os12g0287300;CGSNL Gene Symbol=ISC2;CGSNL Gene Name=IRON-SULFUR CLUSTER PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsISC2;Oryzabase Gene Name Synonym(s)=Iron-sulfur cluster protein 2;Note=Similar to predicted protein.;Transcript_evidence=AK070909 (DDBJ%2C Best hit);ORF_evidence=NP_172325.2 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Aminotransferase%2C class V/Cysteine desulfurase (IPR000192),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J023065F24;Oryzabase=13417;Expression=AK070909;TENOR=Os12t0287300-02;KEGG=Os12t0287300-02 (EC:2.8.1.7%2C EC:4.4.1.16)
Chr12	irgsp1_rep	five_prime_UTR	10971767	10971767	.	-	.	Parent=Os12t0287300-02
Chr12	irgsp1_rep	CDS	10971685	10971766	.	-	0	Parent=Os12t0287300-02
Chr12	irgsp1_rep	CDS	10969446	10969591	.	-	2	Parent=Os12t0287300-02
Chr12	irgsp1_rep	CDS	10969280	10969352	.	-	0	Parent=Os12t0287300-02
Chr12	irgsp1_rep	CDS	10969048	10969111	.	-	2	Parent=Os12t0287300-02
Chr12	irgsp1_rep	CDS	10968293	10968392	.	-	1	Parent=Os12t0287300-02
Chr12	irgsp1_rep	CDS	10967961	10968119	.	-	0	Parent=Os12t0287300-02
Chr12	irgsp1_rep	CDS	10963706	10963876	.	-	0	Parent=Os12t0287300-02
Chr12	irgsp1_rep	three_prime_UTR	10963340	10963705	.	-	.	Parent=Os12t0287300-02
Chr12	irgsp1_rep	mRNA	10996108	10996578	.	+	.	ID=Os12t0287800-01;Name=Os12t0287800-01;Locus_id=Os12g0287800;Note=Hypothetical conserved gene.;Transcript_evidence=AK240794 (DDBJ%2C Best hit);ORF_evidence=B9GCQ1 (UniProt);NIAS_FLcDNA=J065001L18;TENOR=Os12t0287800-01;KEGG=Os12t0287800-01
Chr12	irgsp1_rep	five_prime_UTR	10996108	10996320	.	+	.	Parent=Os12t0287800-01
Chr12	irgsp1_rep	CDS	10996321	10996479	.	+	0	Parent=Os12t0287800-01
Chr12	irgsp1_rep	three_prime_UTR	10996480	10996578	.	+	.	Parent=Os12t0287800-01
Chr12	irgsp1_rep	mRNA	11001590	11004664	.	-	.	ID=Os12t0288000-01;Name=Os12t0288000-01;Locus_id=Os12g0288000;Oryzabase Gene Symbol Synonym(s)=OsSTA278;Note=Similar to cDNA clone:J023146F15%2C full insert sequence.;Transcript_evidence=AK288804 (DDBJ%2C Best hit);ORF_evidence=Q2QTP4 (UniProt);NIAS_FLcDNA=J090071D13;Oryzabase=19535;TENOR=Os12t0288000-01;KEGG=Os12t0288000-01
Chr12	irgsp1_rep	five_prime_UTR	11001895	11004664	.	-	.	Parent=Os12t0288000-01
Chr12	irgsp1_rep	CDS	11001655	11001894	.	-	0	Parent=Os12t0288000-01
Chr12	irgsp1_rep	three_prime_UTR	11001590	11001654	.	-	.	Parent=Os12t0288000-01
Chr12	irgsp1_rep	mRNA	10999193	11004246	.	-	.	ID=Os12t0288000-02;Name=Os12t0288000-02;Locus_id=Os12g0288000;Oryzabase Gene Symbol Synonym(s)=OsSTA278;Note=Similar to Integral membrane protein DUF6 containing protein%2C expressed.;Transcript_evidence=AK069283 (DDBJ%2C Best hit);ORF_evidence=Q2QTP4 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=J023012J07;Oryzabase=19535;TENOR=Os12t0288000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	11003787	11004246	.	-	.	Parent=Os12t0288000-02
Chr12	irgsp1_rep	CDS	11003735	11003786	.	-	0	Parent=Os12t0288000-02
Chr12	irgsp1_rep	CDS	11001680	11001884	.	-	2	Parent=Os12t0288000-02
Chr12	irgsp1_rep	CDS	11000892	11000954	.	-	1	Parent=Os12t0288000-02
Chr12	irgsp1_rep	CDS	11000684	11000800	.	-	1	Parent=Os12t0288000-02
Chr12	irgsp1_rep	CDS	11000313	11000574	.	-	1	Parent=Os12t0288000-02
Chr12	irgsp1_rep	CDS	11000030	11000188	.	-	0	Parent=Os12t0288000-02
Chr12	irgsp1_rep	CDS	10999738	10999889	.	-	0	Parent=Os12t0288000-02
Chr12	irgsp1_rep	CDS	10999284	10999452	.	-	1	Parent=Os12t0288000-02
Chr12	irgsp1_rep	three_prime_UTR	10999193	10999283	.	-	.	Parent=Os12t0288000-02
Chr12	irgsp1_rep	mRNA	10999138	11001938	.	-	.	ID=Os12t0288000-03;Name=Os12t0288000-03;Locus_id=Os12g0288000;Oryzabase Gene Symbol Synonym(s)=OsSTA278;Note=Similar to Integral membrane protein DUF6 containing protein%2C expressed.;Transcript_evidence=AK100993 (DDBJ%2C Best hit);ORF_evidence=B8BP65 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Drug/metabolite transporter (IPR000620);NIAS_FLcDNA=J023146F15;Oryzabase=19535;Expression=AK100993;TENOR=Os12t0288000-03;KEGG=Os12t0288000-03
Chr12	irgsp1_rep	five_prime_UTR	11001895	11001938	.	-	.	Parent=Os12t0288000-03
Chr12	irgsp1_rep	CDS	11001680	11001894	.	-	0	Parent=Os12t0288000-03
Chr12	irgsp1_rep	CDS	11000892	11000954	.	-	1	Parent=Os12t0288000-03
Chr12	irgsp1_rep	CDS	11000684	11000800	.	-	1	Parent=Os12t0288000-03
Chr12	irgsp1_rep	CDS	11000313	11000574	.	-	1	Parent=Os12t0288000-03
Chr12	irgsp1_rep	CDS	11000030	11000188	.	-	0	Parent=Os12t0288000-03
Chr12	irgsp1_rep	CDS	10999734	10999889	.	-	0	Parent=Os12t0288000-03
Chr12	irgsp1_rep	three_prime_UTR	10999138	10999733	.	-	.	Parent=Os12t0288000-03
Chr12	irgsp1_rep	mRNA	11017317	11018483	.	-	.	ID=Os12t0288266-01;Name=Os12t0288266-01;Locus_id=Os12g0288266;Note=Conserved hypothetical protein.;Transcript_evidence=AK289056 (DDBJ%2C Best hit);ORF_evidence=Q8LMG3 (UniProt);NIAS_FLcDNA=J090093D17;TENOR=Os12t0288266-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	11018276	11018483	.	-	.	Parent=Os12t0288266-01
Chr12	irgsp1_rep	CDS	11018096	11018275	.	-	0	Parent=Os12t0288266-01
Chr12	irgsp1_rep	three_prime_UTR	11017317	11018095	.	-	.	Parent=Os12t0288266-01
Chr12	irgsp1_rep	mRNA	11045896	11057114	.	-	.	ID=Os12t0288400-01;Name=Os12t0288400-01;Locus_id=Os12g0288400;Note=Similar to Ubiquitin ligase protein mib (EC 6.3.2.-) (Mind bomb protein).;Transcript_evidence=AK071030 (DDBJ%2C Best hit);ORF_evidence=NP_001150002.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),von Willebrand factor%2C type A (IPR002035),Copine (IPR010734),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J023075N19;Expression=AK071030;TENOR=Os12t0288400-01;KEGG=Os12t0288400-01
Chr12	irgsp1_rep	five_prime_UTR	11056920	11057114	.	-	.	Parent=Os12t0288400-01
Chr12	irgsp1_rep	CDS	11056905	11056919	.	-	0	Parent=Os12t0288400-01
Chr12	irgsp1_rep	CDS	11056275	11056805	.	-	0	Parent=Os12t0288400-01
Chr12	irgsp1_rep	CDS	11054912	11054996	.	-	0	Parent=Os12t0288400-01
Chr12	irgsp1_rep	CDS	11054680	11054820	.	-	2	Parent=Os12t0288400-01
Chr12	irgsp1_rep	CDS	11054466	11054579	.	-	2	Parent=Os12t0288400-01
Chr12	irgsp1_rep	CDS	11054283	11054380	.	-	2	Parent=Os12t0288400-01
Chr12	irgsp1_rep	CDS	11054082	11054161	.	-	0	Parent=Os12t0288400-01
Chr12	irgsp1_rep	CDS	11047325	11047430	.	-	1	Parent=Os12t0288400-01
Chr12	irgsp1_rep	CDS	11047109	11047236	.	-	0	Parent=Os12t0288400-01
Chr12	irgsp1_rep	CDS	11046801	11047005	.	-	1	Parent=Os12t0288400-01
Chr12	irgsp1_rep	CDS	11046334	11046390	.	-	0	Parent=Os12t0288400-01
Chr12	irgsp1_rep	CDS	11046172	11046252	.	-	0	Parent=Os12t0288400-01
Chr12	irgsp1_rep	three_prime_UTR	11045896	11046171	.	-	.	Parent=Os12t0288400-01
Chr12	irgsp1_rep	mRNA	11060788	11073485	.	-	.	ID=Os12t0288600-01;Name=Os12t0288600-01;Locus_id=Os12g0288600;Note=Conserved hypothetical protein.;Transcript_evidence=AK064558 (DDBJ%2C Best hit);ORF_evidence=B9GCQ5 (UniProt);NIAS_FLcDNA=002-112-C07;Expression=AK064558;TENOR=Os12t0288600-01;KEGG=Os12t0288600-01
Chr12	irgsp1_rep	CDS	11073316	11073485	.	-	0	Parent=Os12t0288600-01
Chr12	irgsp1_rep	CDS	11072835	11073017	.	-	1	Parent=Os12t0288600-01
Chr12	irgsp1_rep	CDS	11070534	11070603	.	-	1	Parent=Os12t0288600-01
Chr12	irgsp1_rep	CDS	11068450	11068521	.	-	0	Parent=Os12t0288600-01
Chr12	irgsp1_rep	CDS	11067779	11067980	.	-	0	Parent=Os12t0288600-01
Chr12	irgsp1_rep	CDS	11066739	11066776	.	-	2	Parent=Os12t0288600-01
Chr12	irgsp1_rep	CDS	11063753	11064061	.	-	0	Parent=Os12t0288600-01
Chr12	irgsp1_rep	CDS	11061921	11061992	.	-	0	Parent=Os12t0288600-01
Chr12	irgsp1_rep	CDS	11061603	11061755	.	-	0	Parent=Os12t0288600-01
Chr12	irgsp1_rep	CDS	11061326	11061524	.	-	0	Parent=Os12t0288600-01
Chr12	irgsp1_rep	CDS	11061024	11061241	.	-	2	Parent=Os12t0288600-01
Chr12	irgsp1_rep	three_prime_UTR	11060788	11061023	.	-	.	Parent=Os12t0288600-01
Chr12	irgsp1_rep	mRNA	11075709	11076536	.	-	.	ID=Os12t0288801-00;Name=Os12t0288801-00;Locus_id=Os12g0288801;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B8BP67 (UniProt);TENOR=Os12t0288801-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	11076333	11076536	.	-	0	Parent=Os12t0288801-00
Chr12	irgsp1_rep	CDS	11076026	11076090	.	-	0	Parent=Os12t0288801-00
Chr12	irgsp1_rep	CDS	11075709	11075745	.	-	1	Parent=Os12t0288801-00
Chr12	irgsp1_rep	mRNA	11081520	11083634	.	-	.	ID=Os12t0288900-00;Name=Os12t0288900-00;Locus_id=Os12g0288900;Note=Similar to H0525D09.10 protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q01JV5 (UniProt);GO=Molecular Function: metalloendopeptidase activity (GO:0004222);InterPro=Peptidase M76%2C ATP23 (IPR019165);TENOR=Os12t0288900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	11083486	11083634	.	-	0	Parent=Os12t0288900-00
Chr12	irgsp1_rep	CDS	11082962	11083112	.	-	1	Parent=Os12t0288900-00
Chr12	irgsp1_rep	CDS	11082596	11082733	.	-	0	Parent=Os12t0288900-00
Chr12	irgsp1_rep	CDS	11082405	11082488	.	-	0	Parent=Os12t0288900-00
Chr12	irgsp1_rep	CDS	11081520	11081654	.	-	0	Parent=Os12t0288900-00
Chr12	irgsp1_rep	mRNA	11139235	11141557	.	+	.	ID=Os12t0289600-01;Name=Os12t0289600-01;Locus_id=Os12g0289600;Note=Conserved hypothetical protein.;Transcript_evidence=AK058669 (DDBJ%2C Best hit);ORF_evidence=Q2QTM2 (UniProt);NIAS_FLcDNA=001-018-H01;TENOR=Os12t0289600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	11139235	11139236	.	+	.	Parent=Os12t0289600-01
Chr12	irgsp1_rep	CDS	11139237	11139438	.	+	0	Parent=Os12t0289600-01
Chr12	irgsp1_rep	CDS	11139528	11140227	.	+	2	Parent=Os12t0289600-01
Chr12	irgsp1_rep	CDS	11140388	11140454	.	+	1	Parent=Os12t0289600-01
Chr12	irgsp1_rep	three_prime_UTR	11140455	11140462	.	+	.	Parent=Os12t0289600-01
Chr12	irgsp1_rep	three_prime_UTR	11141162	11141557	.	+	.	Parent=Os12t0289600-01
Chr12	irgsp1_rep	mRNA	11140803	11140983	.	-	.	ID=Os12t0289666-00;Name=Os12t0289666-00;Locus_id=Os12g0289666;Note=Non-protein coding transcript.;Transcript_evidence=EU954740 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0289666-00
Chr12	irgsp1_rep	exon	11140803	11140983	.	-	.	Parent=Os12t0289666-00
Chr12	irgsp1_rep	mRNA	11166091	11169301	.	-	.	ID=Os12t0289800-01;Name=Os12t0289800-01;Locus_id=Os12g0289800;RAP-DB Gene Symbol Synonym(s)=PPR756;RAP-DB Gene Name Synonym(s)=pentatricopeptide repeat protein 756;Note=PLS-E subclass pentatricopeptide repeat (PPR) protein%2C RNA editing in mitochondria%2C Pollen development;Transcript_evidence=Inferred from literature;ORF_evidence=Q2QTL4;GO=Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical domain superfamily (IPR011990),Pentatricopeptide repeat (IPR002885);Manual Curation=June 30%2C 2020;Literature_PMID=32595669;TENOR=Os12t0289800-00;Subcellular location=mitochondrion (GO:0005739)
Chr12	irgsp1_rep	CDS	11167257	11169301	.	-	0	Parent=Os12t0289800-01
Chr12	irgsp1_rep	CDS	11166858	11166918	.	-	1	Parent=Os12t0289800-01
Chr12	irgsp1_rep	CDS	11166339	11166440	.	-	0	Parent=Os12t0289800-01
Chr12	irgsp1_rep	CDS	11166091	11166153	.	-	0	Parent=Os12t0289800-01
Chr12	irgsp1_rep	mRNA	11177011	11178724	.	-	.	ID=Os12t0289833-01;Name=Os12t0289833-01;Locus_id=Os12g0289833;Note=Hypothetical gene.;Transcript_evidence=AK241014 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065053P04;TENOR=Os12t0289833-01;KEGG=Os12t0289833-01
Chr12	irgsp1_rep	five_prime_UTR	11178461	11178724	.	-	.	Parent=Os12t0289833-01
Chr12	irgsp1_rep	CDS	11178201	11178460	.	-	0	Parent=Os12t0289833-01
Chr12	irgsp1_rep	CDS	11177967	11178107	.	-	1	Parent=Os12t0289833-01
Chr12	irgsp1_rep	CDS	11177424	11177535	.	-	1	Parent=Os12t0289833-01
Chr12	irgsp1_rep	three_prime_UTR	11177011	11177423	.	-	.	Parent=Os12t0289833-01
Chr12	irgsp1_rep	mRNA	11184671	11191580	.	+	.	ID=Os12t0290100-01;Name=Os12t0290100-01;Locus_id=Os12g0290100;Note=Similar to Protein kinase.;Transcript_evidence=AK240655 (DDBJ%2C Best hit);ORF_evidence=Q2QTL1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023135E11;TENOR=Os12t0290100-01;KEGG=Os12t0290100-01 (EC:2.7.11.1)
Chr12	irgsp1_rep	five_prime_UTR	11184671	11185027	.	+	.	Parent=Os12t0290100-01
Chr12	irgsp1_rep	CDS	11185028	11185251	.	+	0	Parent=Os12t0290100-01
Chr12	irgsp1_rep	CDS	11187159	11187333	.	+	1	Parent=Os12t0290100-01
Chr12	irgsp1_rep	CDS	11187535	11187618	.	+	0	Parent=Os12t0290100-01
Chr12	irgsp1_rep	CDS	11187693	11187934	.	+	0	Parent=Os12t0290100-01
Chr12	irgsp1_rep	CDS	11188010	11188256	.	+	1	Parent=Os12t0290100-01
Chr12	irgsp1_rep	three_prime_UTR	11188257	11189033	.	+	.	Parent=Os12t0290100-01
Chr12	irgsp1_rep	three_prime_UTR	11189129	11189260	.	+	.	Parent=Os12t0290100-01
Chr12	irgsp1_rep	three_prime_UTR	11189339	11189452	.	+	.	Parent=Os12t0290100-01
Chr12	irgsp1_rep	three_prime_UTR	11190531	11190575	.	+	.	Parent=Os12t0290100-01
Chr12	irgsp1_rep	three_prime_UTR	11190821	11190905	.	+	.	Parent=Os12t0290100-01
Chr12	irgsp1_rep	three_prime_UTR	11191024	11191083	.	+	.	Parent=Os12t0290100-01
Chr12	irgsp1_rep	three_prime_UTR	11191159	11191580	.	+	.	Parent=Os12t0290100-01
Chr12	irgsp1_rep	mRNA	11184800	11191580	.	+	.	ID=Os12t0290100-02;Name=Os12t0290100-02;Locus_id=Os12g0290100;Note=Similar to Protein kinase.;Transcript_evidence=AK242638 (DDBJ%2C Best hit);ORF_evidence=Q2QTL1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J090023J02;TENOR=Os12t0290100-02;KEGG=Os12t0290100-02 (EC:2.7.11.1)
Chr12	irgsp1_rep	five_prime_UTR	11184800	11185027	.	+	.	Parent=Os12t0290100-02
Chr12	irgsp1_rep	CDS	11185028	11185251	.	+	0	Parent=Os12t0290100-02
Chr12	irgsp1_rep	CDS	11187159	11187333	.	+	1	Parent=Os12t0290100-02
Chr12	irgsp1_rep	CDS	11187535	11187618	.	+	0	Parent=Os12t0290100-02
Chr12	irgsp1_rep	CDS	11187693	11187938	.	+	0	Parent=Os12t0290100-02
Chr12	irgsp1_rep	three_prime_UTR	11187939	11188247	.	+	.	Parent=Os12t0290100-02
Chr12	irgsp1_rep	three_prime_UTR	11188949	11189033	.	+	.	Parent=Os12t0290100-02
Chr12	irgsp1_rep	three_prime_UTR	11189129	11189260	.	+	.	Parent=Os12t0290100-02
Chr12	irgsp1_rep	three_prime_UTR	11189339	11189452	.	+	.	Parent=Os12t0290100-02
Chr12	irgsp1_rep	three_prime_UTR	11190531	11190575	.	+	.	Parent=Os12t0290100-02
Chr12	irgsp1_rep	three_prime_UTR	11190821	11190905	.	+	.	Parent=Os12t0290100-02
Chr12	irgsp1_rep	three_prime_UTR	11191024	11191083	.	+	.	Parent=Os12t0290100-02
Chr12	irgsp1_rep	three_prime_UTR	11191159	11191580	.	+	.	Parent=Os12t0290100-02
Chr12	irgsp1_rep	mRNA	11194132	11205015	.	-	.	ID=Os12t0290150-00;Name=Os12t0290150-00;Locus_id=Os12g0290150;Note=Similar to QS (QUINOLINATE SYNTHASE)%3B 4 iron%2C 4 sulfur cluster binding / enzyme activator/ protein homodimerization/ quinolinate synthetase A.;Transcript_evidence=AK374962 (DDBJ);ORF_evidence=NP_199832.1 (RefSeq);GO=Biological Process: NAD biosynthetic process (GO:0009435),Molecular Function: quinolinate synthetase A activity (GO:0008987);InterPro=Quinolinate synthetase A (IPR003473),Fe-S metabolism associated domain%2C SufE-like (IPR003808);TENOR=Os12t0290150-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	11205008	11205015	.	-	.	Parent=Os12t0290150-00
Chr12	irgsp1_rep	CDS	11204303	11205007	.	-	0	Parent=Os12t0290150-00
Chr12	irgsp1_rep	CDS	11201496	11201780	.	-	0	Parent=Os12t0290150-00
Chr12	irgsp1_rep	CDS	11199357	11199575	.	-	0	Parent=Os12t0290150-00
Chr12	irgsp1_rep	CDS	11199050	11199229	.	-	0	Parent=Os12t0290150-00
Chr12	irgsp1_rep	CDS	11196790	11197305	.	-	0	Parent=Os12t0290150-00
Chr12	irgsp1_rep	CDS	11195942	11196103	.	-	0	Parent=Os12t0290150-00
Chr12	irgsp1_rep	CDS	11194318	11194386	.	-	0	Parent=Os12t0290150-00
Chr12	irgsp1_rep	three_prime_UTR	11194132	11194317	.	-	.	Parent=Os12t0290150-00
Chr12	irgsp1_rep	mRNA	11201823	11202284	.	-	.	ID=Os12t0290200-01;Name=Os12t0290200-01;Locus_id=Os12g0290200;Note=Hypothetical protein.;Transcript_evidence=AK112053 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-108-B04;Expression=AK112053;TENOR=Os12t0290200-01;KEGG=Os12t0290200-01
Chr12	irgsp1_rep	five_prime_UTR	11202178	11202284	.	-	.	Parent=Os12t0290200-01
Chr12	irgsp1_rep	CDS	11201926	11202177	.	-	0	Parent=Os12t0290200-01
Chr12	irgsp1_rep	three_prime_UTR	11201823	11201925	.	-	.	Parent=Os12t0290200-01
Chr12	irgsp1_rep	mRNA	11218787	11232943	.	-	.	ID=Os12t0290600-01;Name=Os12t0290600-01;Locus_id=Os12g0290600;Note=Similar to Dual specificity protein phosphatase 8 (EC 3.1.3.48) (EC 3.1.3.16) (Neuronal tyrosine threonine phosphatase 1).;Transcript_evidence=AK073696 (DDBJ%2C Best hit);ORF_evidence=B8BP74 (UniProt);InterPro=SGF29 tudor-like domain (IPR010750);NIAS_FLcDNA=J033063H10;Expression=AK073696;TENOR=Os12t0290600-01;KEGG=Os12t0290600-01 (EC:3.1.3.48)
Chr12	irgsp1_rep	five_prime_UTR	11232790	11232943	.	-	.	Parent=Os12t0290600-01
Chr12	irgsp1_rep	CDS	11232618	11232789	.	-	0	Parent=Os12t0290600-01
Chr12	irgsp1_rep	CDS	11229607	11229700	.	-	2	Parent=Os12t0290600-01
Chr12	irgsp1_rep	CDS	11227242	11227318	.	-	1	Parent=Os12t0290600-01
Chr12	irgsp1_rep	CDS	11227042	11227154	.	-	2	Parent=Os12t0290600-01
Chr12	irgsp1_rep	CDS	11225724	11225806	.	-	0	Parent=Os12t0290600-01
Chr12	irgsp1_rep	CDS	11224648	11224698	.	-	1	Parent=Os12t0290600-01
Chr12	irgsp1_rep	CDS	11222409	11222559	.	-	1	Parent=Os12t0290600-01
Chr12	irgsp1_rep	CDS	11219719	11219732	.	-	0	Parent=Os12t0290600-01
Chr12	irgsp1_rep	CDS	11219010	11219112	.	-	1	Parent=Os12t0290600-01
Chr12	irgsp1_rep	three_prime_UTR	11218787	11219009	.	-	.	Parent=Os12t0290600-01
Chr12	irgsp1_rep	mRNA	11231966	11232588	.	-	.	ID=Os12t0290800-01;Name=Os12t0290800-01;Locus_id=Os12g0290800;Note=Non-protein coding transcript.;Transcript_evidence=AK062678 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-105-H02;TENOR=Os12t0290800-01
Chr12	irgsp1_rep	exon	11231966	11232588	.	-	.	Parent=Os12t0290800-01
Chr12	irgsp1_rep	mRNA	11242571	11259839	.	+	.	ID=Os12t0291000-00;Name=Os12t0291000-00;Locus_id=Os12g0291000;Note=Similar to DNA-directed DNA polymerase family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QTK2 (UniProt);GO=Biological Process: DNA replication (GO:0006260),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677),Molecular Function: DNA-directed DNA polymerase activity (GO:0003887),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=DNA-directed DNA polymerase%2C family A%2C palm domain (IPR001098),Helicase%2C C-terminal (IPR001650),DNA polymerase A (IPR002298),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001);TENOR=Os12t0291000-00;KEGG=Os12t0291000-00 (EC:2.7.7.7)
Chr12	irgsp1_rep	CDS	11242571	11242606	.	+	0	Parent=Os12t0291000-00
Chr12	irgsp1_rep	CDS	11242704	11242999	.	+	0	Parent=Os12t0291000-00
Chr12	irgsp1_rep	CDS	11243094	11243244	.	+	1	Parent=Os12t0291000-00
Chr12	irgsp1_rep	CDS	11243362	11243430	.	+	0	Parent=Os12t0291000-00
Chr12	irgsp1_rep	CDS	11243532	11244461	.	+	0	Parent=Os12t0291000-00
Chr12	irgsp1_rep	CDS	11245395	11245459	.	+	0	Parent=Os12t0291000-00
Chr12	irgsp1_rep	CDS	11245644	11245749	.	+	1	Parent=Os12t0291000-00
Chr12	irgsp1_rep	CDS	11245831	11246031	.	+	0	Parent=Os12t0291000-00
Chr12	irgsp1_rep	CDS	11247982	11248182	.	+	0	Parent=Os12t0291000-00
Chr12	irgsp1_rep	CDS	11250406	11250567	.	+	0	Parent=Os12t0291000-00
Chr12	irgsp1_rep	CDS	11250657	11250896	.	+	0	Parent=Os12t0291000-00
Chr12	irgsp1_rep	CDS	11251248	11251460	.	+	0	Parent=Os12t0291000-00
Chr12	irgsp1_rep	CDS	11251599	11251949	.	+	0	Parent=Os12t0291000-00
Chr12	irgsp1_rep	CDS	11252022	11252174	.	+	0	Parent=Os12t0291000-00
Chr12	irgsp1_rep	CDS	11252630	11252839	.	+	0	Parent=Os12t0291000-00
Chr12	irgsp1_rep	CDS	11253030	11253248	.	+	0	Parent=Os12t0291000-00
Chr12	irgsp1_rep	CDS	11253346	11253463	.	+	0	Parent=Os12t0291000-00
Chr12	irgsp1_rep	CDS	11253860	11254809	.	+	2	Parent=Os12t0291000-00
Chr12	irgsp1_rep	CDS	11255004	11255201	.	+	0	Parent=Os12t0291000-00
Chr12	irgsp1_rep	CDS	11255275	11255534	.	+	0	Parent=Os12t0291000-00
Chr12	irgsp1_rep	CDS	11256297	11256486	.	+	1	Parent=Os12t0291000-00
Chr12	irgsp1_rep	CDS	11256601	11256714	.	+	0	Parent=Os12t0291000-00
Chr12	irgsp1_rep	CDS	11256798	11257150	.	+	0	Parent=Os12t0291000-00
Chr12	irgsp1_rep	CDS	11259259	11259367	.	+	1	Parent=Os12t0291000-00
Chr12	irgsp1_rep	CDS	11259447	11259596	.	+	0	Parent=Os12t0291000-00
Chr12	irgsp1_rep	CDS	11259729	11259839	.	+	0	Parent=Os12t0291000-00
Chr12	irgsp1_rep	mRNA	11260276	11260721	.	+	.	ID=Os12t0291033-01;Name=Os12t0291033-01;Locus_id=Os12g0291033;Note=Hypothetical conserved gene.;Transcript_evidence=AK241394 (DDBJ%2C Best hit);ORF_evidence=Q2QTK2 (UniProt);NIAS_FLcDNA=J065157M07;TENOR=Os12t0291033-01;KEGG=Os12t0291033-01 (EC:2.7.7.7)
Chr12	irgsp1_rep	five_prime_UTR	11260276	11260276	.	+	.	Parent=Os12t0291033-01
Chr12	irgsp1_rep	CDS	11260277	11260396	.	+	0	Parent=Os12t0291033-01
Chr12	irgsp1_rep	three_prime_UTR	11260397	11260721	.	+	.	Parent=Os12t0291033-01
Chr12	irgsp1_rep	mRNA	11262347	11263273	.	-	.	ID=Os12t0291066-00;Name=Os12t0291066-00;Locus_id=Os12g0291066;Note=Hypothetical gene.;Transcript_evidence=BT085253 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0291066-00;KEGG=Os12t0291066-00
Chr12	irgsp1_rep	five_prime_UTR	11263272	11263273	.	-	.	Parent=Os12t0291066-00
Chr12	irgsp1_rep	CDS	11262948	11263271	.	-	0	Parent=Os12t0291066-00
Chr12	irgsp1_rep	three_prime_UTR	11262347	11262947	.	-	.	Parent=Os12t0291066-00
Chr12	irgsp1_rep	mRNA	11262587	11263593	.	+	.	ID=Os12t0291100-01;Name=Os12t0291100-01;Locus_id=Os12g0291100;CGSNL Gene Symbol=RBCS3;CGSNL Gene Name=RUBISCO SMALL SUBUNIT 3;Oryzabase Gene Symbol Synonym(s)=RbcS3%2C OsRBCS3%2C OsRbcS3%2C rbcS;Oryzabase Gene Name Synonym(s)=RuBisCO small subunit 3%2C Ribulose-1%2C 5-Bisphosphate Carboxylase/Oxygenase Small Subunit 3;Note=Similar to Petunia ribulose 1%2C5-bisphosphate carboxylase small subunit mRNA (clone pSSU 51)%2C partial cds. (Fragment).;Transcript_evidence=AK068555 (DDBJ%2C Best hit);ORF_evidence=A6N0B6 (UniProt);InterPro=Ribulose bisphosphate carboxylase small chain%2C domain (IPR000894),Ribulose-1%2C5-bisphosphate carboxylase small subunit%2C N-terminal (IPR024680),Ribulose bisphosphate carboxylase%2C small chain (IPR024681);NIAS_FLcDNA=J013156H12;Oryzabase=12043;Expression=AK068555;TENOR=Os12t0291100-01;KEGG=Os12t0291100-01 (EC:4.1.1.39)
Chr12	irgsp1_rep	five_prime_UTR	11262587	11262653	.	+	.	Parent=Os12t0291100-01
Chr12	irgsp1_rep	CDS	11262654	11262800	.	+	0	Parent=Os12t0291100-01
Chr12	irgsp1_rep	CDS	11262912	11263292	.	+	0	Parent=Os12t0291100-01
Chr12	irgsp1_rep	three_prime_UTR	11263293	11263593	.	+	.	Parent=Os12t0291100-01
Chr12	irgsp1_rep	mRNA	11263219	11263636	.	+	.	ID=Os12t0291100-02;Name=Os12t0291100-02;Locus_id=Os12g0291100;CGSNL Gene Symbol=RBCS3;CGSNL Gene Name=RUBISCO SMALL SUBUNIT 3;Oryzabase Gene Symbol Synonym(s)=RbcS3%2C OsRBCS3%2C OsRbcS3%2C rbcS;Oryzabase Gene Name Synonym(s)=RuBisCO small subunit 3%2C Ribulose-1%2C 5-Bisphosphate Carboxylase/Oxygenase Small Subunit 3;Note=Similar to Ribulose bisphosphate carboxylase small chain.;Transcript_evidence=AK058875 (DDBJ%2C Best hit);ORF_evidence=Q36688 (UniProt);NIAS_FLcDNA=001-006-F10;Oryzabase=12043;Expression=AK058875;TENOR=Os12t0291100-02;KEGG=Os12t0291100-02
Chr12	irgsp1_rep	five_prime_UTR	11263219	11263220	.	+	.	Parent=Os12t0291100-02
Chr12	irgsp1_rep	CDS	11263221	11263292	.	+	0	Parent=Os12t0291100-02
Chr12	irgsp1_rep	three_prime_UTR	11263293	11263636	.	+	.	Parent=Os12t0291100-02
Chr12	irgsp1_rep	mRNA	11263303	11263583	.	+	.	ID=Os12t0291100-03;Name=Os12t0291100-03;Locus_id=Os12g0291100;CGSNL Gene Symbol=RBCS3;CGSNL Gene Name=RUBISCO SMALL SUBUNIT 3;Oryzabase Gene Symbol Synonym(s)=RbcS3%2C OsRBCS3%2C OsRbcS3%2C rbcS;Oryzabase Gene Name Synonym(s)=RuBisCO small subunit 3%2C Ribulose-1%2C 5-Bisphosphate Carboxylase/Oxygenase Small Subunit 3;Note=Non-protein coding transcript.;Transcript_evidence=AK060619 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-026-C06;Oryzabase=12043;TENOR=Os12t0291100-03
Chr12	irgsp1_rep	exon	11263303	11263583	.	+	.	Parent=Os12t0291100-03
Chr12	irgsp1_rep	mRNA	11265647	11267889	.	+	.	ID=Os12t0291200-00;Name=Os12t0291200-00;Locus_id=Os12g0291200;Note=Similar to Ribulose bisphosphate carboxylase small chain.;Transcript_evidence=tplb0005h13 (Wheat FLcDNA);ORF_evidence=A6N0B6 (UniProt);InterPro=Ribulose bisphosphate carboxylase small chain%2C domain (IPR000894),Ribulose-1%2C5-bisphosphate carboxylase small subunit%2C N-terminal (IPR024680),Ribulose bisphosphate carboxylase%2C small chain (IPR024681);TENOR=Os12t0291200-00;KEGG=Os12t0291200-00 (EC:4.1.1.39)
Chr12	irgsp1_rep	CDS	11265647	11265838	.	+	0	Parent=Os12t0291200-00
Chr12	irgsp1_rep	CDS	11267523	11267621	.	+	0	Parent=Os12t0291200-00
Chr12	irgsp1_rep	three_prime_UTR	11267622	11267889	.	+	.	Parent=Os12t0291200-00
Chr12	irgsp1_rep	mRNA	11265680	11267875	.	-	.	ID=Os12t0291301-00;Name=Os12t0291301-00;Locus_id=Os12g0291301;Note=Hypothetical gene.;Transcript_evidence=BT085253 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0291301-00;KEGG=Os12t0291301-00
Chr12	irgsp1_rep	five_prime_UTR	11267841	11267875	.	-	.	Parent=Os12t0291301-00
Chr12	irgsp1_rep	CDS	11267595	11267840	.	-	0	Parent=Os12t0291301-00
Chr12	irgsp1_rep	three_prime_UTR	11267444	11267594	.	-	.	Parent=Os12t0291301-00
Chr12	irgsp1_rep	three_prime_UTR	11265680	11265934	.	-	.	Parent=Os12t0291301-00
Chr12	irgsp1_rep	mRNA	11277247	11278306	.	+	.	ID=Os12t0291400-01;Name=Os12t0291400-01;Locus_id=Os12g0291400;CGSNL Gene Symbol=RBCS5;CGSNL Gene Name=RUBISCO SMALL SUBUNIT 5;Oryzabase Gene Symbol Synonym(s)=RbcS5%2C OsRBCS5%2C OsRbcS5;Oryzabase Gene Name Synonym(s)=RuBisCO small subunit 5%2C Ribulose-1%2C 5-Bisphosphate Carboxylase/Oxygenase Small Subunit 5;Note=Similar to Petunia ribulose 1%2C5-bisphosphate carboxylase small subunit mRNA (clone pSSU 51)%2C partial cds. (Fragment).;Transcript_evidence=AK099574 (DDBJ%2C Best hit);ORF_evidence=A6N0B6 (UniProt);InterPro=Ribulose bisphosphate carboxylase small chain%2C domain (IPR000894),Ribulose-1%2C5-bisphosphate carboxylase small subunit%2C N-terminal (IPR024680),Ribulose bisphosphate carboxylase%2C small chain (IPR024681);NIAS_FLcDNA=J013036G21;Oryzabase=12044;Expression=AK099574;TENOR=Os12t0291400-01;KEGG=Os12t0291400-01 (EC:4.1.1.39)
Chr12	irgsp1_rep	five_prime_UTR	11277247	11277310	.	+	.	Parent=Os12t0291400-01
Chr12	irgsp1_rep	CDS	11277311	11277457	.	+	0	Parent=Os12t0291400-01
Chr12	irgsp1_rep	CDS	11277575	11277955	.	+	0	Parent=Os12t0291400-01
Chr12	irgsp1_rep	three_prime_UTR	11277956	11278306	.	+	.	Parent=Os12t0291400-01
Chr12	irgsp1_rep	mRNA	11277307	11278105	.	-	.	ID=Os12t0291733-00;Name=Os12t0291733-00;Locus_id=Os12g0291733;Note=Hypothetical gene.;Transcript_evidence=BT085253 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0291733-00;KEGG=Os12t0291733-00
Chr12	irgsp1_rep	CDS	11277491	11278105	.	-	0	Parent=Os12t0291733-00
Chr12	irgsp1_rep	three_prime_UTR	11277307	11277490	.	-	.	Parent=Os12t0291733-00
Chr12	irgsp1_rep	mRNA	11301357	11306869	.	+	.	ID=Os12t0292200-01;Name=Os12t0292200-01;Locus_id=Os12g0292200;Note=Hypothetical gene.;Transcript_evidence=AK288617 (DDBJ%2C Best hit);ORF_evidence=Q01M79 (UniProt);NIAS_FLcDNA=J090054B15;TENOR=Os12t0292200-01;KEGG=Os12t0292200-01
Chr12	irgsp1_rep	five_prime_UTR	11301357	11301607	.	+	.	Parent=Os12t0292200-01
Chr12	irgsp1_rep	CDS	11301608	11302183	.	+	0	Parent=Os12t0292200-01
Chr12	irgsp1_rep	three_prime_UTR	11302184	11306869	.	+	.	Parent=Os12t0292200-01
Chr12	irgsp1_rep	mRNA	11320348	11321083	.	-	.	ID=Os12t0292301-00;Name=Os12t0292301-00;Locus_id=Os12g0292301;Note=Hypothetical gene.;Transcript_evidence=BT085253 (DDBJ);ORF_evidence=longestORF;GO=Molecular Function: protein binding (GO:0005515);InterPro=Immunoglobulin-like (IPR007110);TENOR=Os12t0292301-00;KEGG=Os12t0292301-00
Chr12	irgsp1_rep	five_prime_UTR	11320615	11321083	.	-	.	Parent=Os12t0292301-00
Chr12	irgsp1_rep	CDS	11320348	11320614	.	-	0	Parent=Os12t0292301-00
Chr12	irgsp1_rep	mRNA	11320409	11322505	.	+	.	ID=Os12t0292400-01;Name=Os12t0292400-01;Locus_id=Os12g0292400;CGSNL Gene Symbol=RBCS4;CGSNL Gene Name=RUBISCO SMALL SUBUNIT 4;Oryzabase Gene Symbol Synonym(s)=RbcS%2C RbcS4%2C OsRBCS4%2C OsRbcS4;Oryzabase Gene Name Synonym(s)=nuclear encoded small subunit of ribulose-1%2C 5-bisphosphate carboxylase/oxygenase%2C RuBisCO small subunit 4%2C Ribulose-1%2C 5-Bisphosphate Carboxylase/Oxygenase Small Subunit 4;Note=Similar to Petunia ribulose 1%2C5-bisphosphate carboxylase small subunit mRNA (clone pSSU 51)%2C partial cds. (Fragment).;Transcript_evidence=AK068266 (DDBJ%2C Best hit),AK070257 (DDBJ%2C Best hit);ORF_evidence=A6MZQ8 (UniProt);InterPro=Ribulose bisphosphate carboxylase small chain%2C domain (IPR000894),Ribulose-1%2C5-bisphosphate carboxylase small subunit%2C N-terminal (IPR024680),Ribulose bisphosphate carboxylase%2C small chain (IPR024681);NIAS_FLcDNA=J013149A10,J023042N11;Oryzabase=9713;TENOR=Os12t0292400-01
Chr12	irgsp1_rep	five_prime_UTR	11320409	11320471	.	+	.	Parent=Os12t0292400-01
Chr12	irgsp1_rep	CDS	11320472	11320618	.	+	0	Parent=Os12t0292400-01
Chr12	irgsp1_rep	CDS	11320722	11321102	.	+	0	Parent=Os12t0292400-01
Chr12	irgsp1_rep	three_prime_UTR	11321103	11322505	.	+	.	Parent=Os12t0292400-01
Chr12	irgsp1_rep	mRNA	11349870	11357208	.	+	.	ID=Os12t0292900-01;Name=Os12t0292900-01;Locus_id=Os12g0292900;Note=Conserved hypothetical protein.;Transcript_evidence=AK067612 (DDBJ%2C Best hit);ORF_evidence=B8BP79 (UniProt);NIAS_FLcDNA=J013112A21;TENOR=Os12t0292900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	11349870	11350014	.	+	.	Parent=Os12t0292900-01
Chr12	irgsp1_rep	CDS	11350015	11350419	.	+	0	Parent=Os12t0292900-01
Chr12	irgsp1_rep	CDS	11351562	11351567	.	+	0	Parent=Os12t0292900-01
Chr12	irgsp1_rep	CDS	11351659	11351661	.	+	0	Parent=Os12t0292900-01
Chr12	irgsp1_rep	three_prime_UTR	11351662	11351729	.	+	.	Parent=Os12t0292900-01
Chr12	irgsp1_rep	three_prime_UTR	11352170	11352269	.	+	.	Parent=Os12t0292900-01
Chr12	irgsp1_rep	three_prime_UTR	11352839	11352901	.	+	.	Parent=Os12t0292900-01
Chr12	irgsp1_rep	three_prime_UTR	11352973	11353044	.	+	.	Parent=Os12t0292900-01
Chr12	irgsp1_rep	three_prime_UTR	11353158	11353250	.	+	.	Parent=Os12t0292900-01
Chr12	irgsp1_rep	three_prime_UTR	11353623	11353825	.	+	.	Parent=Os12t0292900-01
Chr12	irgsp1_rep	three_prime_UTR	11355760	11356037	.	+	.	Parent=Os12t0292900-01
Chr12	irgsp1_rep	three_prime_UTR	11356542	11356825	.	+	.	Parent=Os12t0292900-01
Chr12	irgsp1_rep	three_prime_UTR	11356918	11357208	.	+	.	Parent=Os12t0292900-01
Chr12	irgsp1_rep	mRNA	11349870	11357236	.	+	.	ID=Os12t0292900-02;Name=Os12t0292900-02;Locus_id=Os12g0292900;Note=Similar to ATP binding protein.;Transcript_evidence=AK064818 (DDBJ%2C Best hit);ORF_evidence=B6SY20 (UniProt);NIAS_FLcDNA=J013000E17;TENOR=Os12t0292900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	11349870	11349870	.	+	.	Parent=Os12t0292900-02
Chr12	irgsp1_rep	CDS	11349871	11350419	.	+	0	Parent=Os12t0292900-02
Chr12	irgsp1_rep	CDS	11351562	11351729	.	+	0	Parent=Os12t0292900-02
Chr12	irgsp1_rep	CDS	11352170	11352481	.	+	0	Parent=Os12t0292900-02
Chr12	irgsp1_rep	CDS	11352839	11352901	.	+	0	Parent=Os12t0292900-02
Chr12	irgsp1_rep	CDS	11352973	11353044	.	+	0	Parent=Os12t0292900-02
Chr12	irgsp1_rep	CDS	11353158	11353250	.	+	0	Parent=Os12t0292900-02
Chr12	irgsp1_rep	CDS	11353623	11353825	.	+	0	Parent=Os12t0292900-02
Chr12	irgsp1_rep	CDS	11355760	11355772	.	+	1	Parent=Os12t0292900-02
Chr12	irgsp1_rep	three_prime_UTR	11355773	11356037	.	+	.	Parent=Os12t0292900-02
Chr12	irgsp1_rep	three_prime_UTR	11356627	11356825	.	+	.	Parent=Os12t0292900-02
Chr12	irgsp1_rep	three_prime_UTR	11356915	11357236	.	+	.	Parent=Os12t0292900-02
Chr12	irgsp1_rep	mRNA	11350009	11357200	.	+	.	ID=Os12t0292900-03;Name=Os12t0292900-03;Locus_id=Os12g0292900;Note=Similar to ATP binding protein.;Transcript_evidence=AK066177 (DDBJ%2C Best hit);ORF_evidence=B6SY20 (UniProt);NIAS_FLcDNA=J013054L24;TENOR=Os12t0292900-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	11350009	11350014	.	+	.	Parent=Os12t0292900-03
Chr12	irgsp1_rep	CDS	11350015	11350419	.	+	0	Parent=Os12t0292900-03
Chr12	irgsp1_rep	CDS	11351562	11351729	.	+	0	Parent=Os12t0292900-03
Chr12	irgsp1_rep	CDS	11352170	11352496	.	+	0	Parent=Os12t0292900-03
Chr12	irgsp1_rep	three_prime_UTR	11352497	11352901	.	+	.	Parent=Os12t0292900-03
Chr12	irgsp1_rep	three_prime_UTR	11352973	11353044	.	+	.	Parent=Os12t0292900-03
Chr12	irgsp1_rep	three_prime_UTR	11353158	11353250	.	+	.	Parent=Os12t0292900-03
Chr12	irgsp1_rep	three_prime_UTR	11353623	11353825	.	+	.	Parent=Os12t0292900-03
Chr12	irgsp1_rep	three_prime_UTR	11355760	11356037	.	+	.	Parent=Os12t0292900-03
Chr12	irgsp1_rep	three_prime_UTR	11356542	11356825	.	+	.	Parent=Os12t0292900-03
Chr12	irgsp1_rep	three_prime_UTR	11356918	11357200	.	+	.	Parent=Os12t0292900-03
Chr12	irgsp1_rep	mRNA	11357939	11360914	.	+	.	ID=Os12t0293000-01;Name=Os12t0293000-01;Locus_id=Os12g0293000;Note=Hypothetical conserved gene.;Transcript_evidence=AK069712 (DDBJ%2C Best hit);ORF_evidence=NP_001066609.1 (RefSeq);NIAS_FLcDNA=J023031I08;TENOR=Os12t0293000-01;KEGG=Os12t0293000-01
Chr12	irgsp1_rep	five_prime_UTR	11357939	11359588	.	+	.	Parent=Os12t0293000-01
Chr12	irgsp1_rep	CDS	11359589	11359595	.	+	0	Parent=Os12t0293000-01
Chr12	irgsp1_rep	CDS	11359684	11359772	.	+	2	Parent=Os12t0293000-01
Chr12	irgsp1_rep	three_prime_UTR	11359773	11359810	.	+	.	Parent=Os12t0293000-01
Chr12	irgsp1_rep	three_prime_UTR	11359893	11360914	.	+	.	Parent=Os12t0293000-01
Chr12	irgsp1_rep	mRNA	11357939	11360175	.	+	.	ID=Os12t0293000-02;Name=Os12t0293000-02;Locus_id=Os12g0293000;Note=Conserved hypothetical protein.;Transcript_evidence=AK100747 (DDBJ%2C Best hit);ORF_evidence=NP_001066609.1 (RefSeq);NIAS_FLcDNA=J023118I12;TENOR=Os12t0293000-02;KEGG=Os12t0293000-02
Chr12	irgsp1_rep	five_prime_UTR	11357939	11359523	.	+	.	Parent=Os12t0293000-02
Chr12	irgsp1_rep	CDS	11359524	11359772	.	+	0	Parent=Os12t0293000-02
Chr12	irgsp1_rep	three_prime_UTR	11359773	11359810	.	+	.	Parent=Os12t0293000-02
Chr12	irgsp1_rep	three_prime_UTR	11359893	11360175	.	+	.	Parent=Os12t0293000-02
Chr12	irgsp1_rep	mRNA	11366103	11378831	.	-	.	ID=Os12t0293100-01;Name=Os12t0293100-01;Locus_id=Os12g0293100;CGSNL Gene Symbol=TERT;CGSNL Gene Name=TELOMERASE REVERSE TRANSCRIPTASE;Oryzabase Gene Symbol Synonym(s)=OsTERT;Oryzabase Gene Name Synonym(s)=rice telomerase reverse transcriptase%2C Telomerase reverse transcriptase;Note=Similar to Telomerase reverse transcriptase.;Transcript_evidence=AK120344 (DDBJ%2C Best hit);ORF_evidence=Q8LKW0 (UniProt);NIAS_FLcDNA=J013063G13;Oryzabase=3036;Expression=AK120344;TENOR=Os12t0293100-01;KEGG=Os12t0293100-01 (EC:2.7.7.49)
Chr12	irgsp1_rep	five_prime_UTR	11378541	11378831	.	-	.	Parent=Os12t0293100-01
Chr12	irgsp1_rep	five_prime_UTR	11377325	11377501	.	-	.	Parent=Os12t0293100-01
Chr12	irgsp1_rep	CDS	11376986	11377324	.	-	0	Parent=Os12t0293100-01
Chr12	irgsp1_rep	CDS	11376774	11376854	.	-	0	Parent=Os12t0293100-01
Chr12	irgsp1_rep	CDS	11375581	11375646	.	-	0	Parent=Os12t0293100-01
Chr12	irgsp1_rep	CDS	11375318	11375497	.	-	0	Parent=Os12t0293100-01
Chr12	irgsp1_rep	CDS	11372035	11372664	.	-	0	Parent=Os12t0293100-01
Chr12	irgsp1_rep	CDS	11368705	11368731	.	-	0	Parent=Os12t0293100-01
Chr12	irgsp1_rep	three_prime_UTR	11368632	11368704	.	-	.	Parent=Os12t0293100-01
Chr12	irgsp1_rep	three_prime_UTR	11366103	11366413	.	-	.	Parent=Os12t0293100-01
Chr12	irgsp1_rep	mRNA	11394171	11398539	.	+	.	ID=Os12t0293601-00;Name=Os12t0293601-00;Locus_id=Os12g0293601;Note=Non-protein coding transcript.;Transcript_evidence=BT086883 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0293601-00
Chr12	irgsp1_rep	exon	11394171	11394261	.	+	.	Parent=Os12t0293601-00
Chr12	irgsp1_rep	exon	11398463	11398539	.	+	.	Parent=Os12t0293601-00
Chr12	irgsp1_rep	mRNA	11419984	11429093	.	+	.	ID=Os12t0294100-01;Name=Os12t0294100-01;Locus_id=Os12g0294100;Oryzabase Gene Symbol Synonym(s)=OsWD40-197;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK111535 (DDBJ%2C Best hit);ORF_evidence=XP_002882132.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J013030D09;Oryzabase=10878;Expression=AK111535;TENOR=Os12t0294100-01;KEGG=Os12t0294100-01
Chr12	irgsp1_rep	five_prime_UTR	11419984	11420188	.	+	.	Parent=Os12t0294100-01
Chr12	irgsp1_rep	CDS	11420189	11420400	.	+	0	Parent=Os12t0294100-01
Chr12	irgsp1_rep	CDS	11421212	11421419	.	+	1	Parent=Os12t0294100-01
Chr12	irgsp1_rep	CDS	11422830	11422919	.	+	0	Parent=Os12t0294100-01
Chr12	irgsp1_rep	CDS	11423537	11423611	.	+	0	Parent=Os12t0294100-01
Chr12	irgsp1_rep	CDS	11426281	11426487	.	+	0	Parent=Os12t0294100-01
Chr12	irgsp1_rep	three_prime_UTR	11426488	11427007	.	+	.	Parent=Os12t0294100-01
Chr12	irgsp1_rep	three_prime_UTR	11427132	11427216	.	+	.	Parent=Os12t0294100-01
Chr12	irgsp1_rep	three_prime_UTR	11428590	11429093	.	+	.	Parent=Os12t0294100-01
Chr12	irgsp1_rep	mRNA	11563795	11576773	.	-	.	ID=Os12t0295600-00;Name=Os12t0295600-00;Locus_id=Os12g0295600;Note=Similar to predicted protein.;Transcript_evidence=CT835616 (DDBJ%2C Best hit);ORF_evidence=NP_001176909.1 (RefSeq);TENOR=Os12t0295600-00;KEGG=Os12t0295600-00
Chr12	irgsp1_rep	five_prime_UTR	11576700	11576773	.	-	.	Parent=Os12t0295600-00
Chr12	irgsp1_rep	CDS	11576094	11576699	.	-	0	Parent=Os12t0295600-00
Chr12	irgsp1_rep	three_prime_UTR	11575973	11576093	.	-	.	Parent=Os12t0295600-00
Chr12	irgsp1_rep	three_prime_UTR	11563795	11564219	.	-	.	Parent=Os12t0295600-00
Chr12	irgsp1_rep	mRNA	11716268	11724611	.	+	.	ID=Os12t0297400-01;Name=Os12t0297400-01;Locus_id=Os12g0297400;Note=Hypothetical protein.;Transcript_evidence=AK061658 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-036-D10;Expression=AK061658;TENOR=Os12t0297400-01;KEGG=Os12t0297400-01
Chr12	irgsp1_rep	five_prime_UTR	11716268	11716394	.	+	.	Parent=Os12t0297400-01
Chr12	irgsp1_rep	CDS	11716395	11716649	.	+	0	Parent=Os12t0297400-01
Chr12	irgsp1_rep	three_prime_UTR	11716650	11716718	.	+	.	Parent=Os12t0297400-01
Chr12	irgsp1_rep	three_prime_UTR	11716849	11717018	.	+	.	Parent=Os12t0297400-01
Chr12	irgsp1_rep	three_prime_UTR	11717361	11717525	.	+	.	Parent=Os12t0297400-01
Chr12	irgsp1_rep	three_prime_UTR	11718464	11718563	.	+	.	Parent=Os12t0297400-01
Chr12	irgsp1_rep	three_prime_UTR	11718944	11718997	.	+	.	Parent=Os12t0297400-01
Chr12	irgsp1_rep	three_prime_UTR	11719132	11719192	.	+	.	Parent=Os12t0297400-01
Chr12	irgsp1_rep	three_prime_UTR	11721021	11721065	.	+	.	Parent=Os12t0297400-01
Chr12	irgsp1_rep	three_prime_UTR	11721171	11721235	.	+	.	Parent=Os12t0297400-01
Chr12	irgsp1_rep	three_prime_UTR	11721654	11721744	.	+	.	Parent=Os12t0297400-01
Chr12	irgsp1_rep	three_prime_UTR	11722554	11722681	.	+	.	Parent=Os12t0297400-01
Chr12	irgsp1_rep	three_prime_UTR	11722890	11722996	.	+	.	Parent=Os12t0297400-01
Chr12	irgsp1_rep	three_prime_UTR	11724152	11724611	.	+	.	Parent=Os12t0297400-01
Chr12	irgsp1_rep	mRNA	11727437	11744407	.	-	.	ID=Os12t0297500-01;Name=Os12t0297500-01;Locus_id=Os12g0297500;Note=Pyruvate phosphate dikinase%2C PEP/pyruvate-binding domain containing protein.;Transcript_evidence=AK072331 (DDBJ%2C Best hit);ORF_evidence=Q2QTC2 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: phosphorylation (GO:0016310),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524),Molecular Function: kinase activity (GO:0016301),Molecular Function: ligase activity (GO:0016874),Molecular Function: carbohydrate binding (GO:0030246);InterPro=Glycoside hydrolase%2C carbohydrate-binding (IPR002044),Pyruvate phosphate dikinase%2C PEP/pyruvate-binding (IPR002192),Immunoglobulin-like fold (IPR013783),Carbohydrate-binding-like fold (IPR013784),ATP-grasp fold%2C subdomain 1 (IPR013815),ATP-grasp fold%2C subdomain 2 (IPR013816);NIAS_FLcDNA=J023039L19;Expression=AK072331;TENOR=Os12t0297500-01;KEGG=Os12t0297500-01
Chr12	irgsp1_rep	five_prime_UTR	11744325	11744407	.	-	.	Parent=Os12t0297500-01
Chr12	irgsp1_rep	CDS	11744146	11744324	.	-	0	Parent=Os12t0297500-01
Chr12	irgsp1_rep	CDS	11742772	11743423	.	-	1	Parent=Os12t0297500-01
Chr12	irgsp1_rep	CDS	11740190	11740276	.	-	0	Parent=Os12t0297500-01
Chr12	irgsp1_rep	CDS	11739920	11740051	.	-	0	Parent=Os12t0297500-01
Chr12	irgsp1_rep	CDS	11739083	11739208	.	-	0	Parent=Os12t0297500-01
Chr12	irgsp1_rep	CDS	11738826	11739004	.	-	0	Parent=Os12t0297500-01
Chr12	irgsp1_rep	CDS	11737488	11737572	.	-	1	Parent=Os12t0297500-01
Chr12	irgsp1_rep	CDS	11736967	11737134	.	-	0	Parent=Os12t0297500-01
Chr12	irgsp1_rep	CDS	11736835	11736887	.	-	0	Parent=Os12t0297500-01
Chr12	irgsp1_rep	CDS	11734843	11735048	.	-	1	Parent=Os12t0297500-01
Chr12	irgsp1_rep	CDS	11734617	11734735	.	-	2	Parent=Os12t0297500-01
Chr12	irgsp1_rep	CDS	11733079	11733149	.	-	0	Parent=Os12t0297500-01
Chr12	irgsp1_rep	CDS	11732868	11732985	.	-	1	Parent=Os12t0297500-01
Chr12	irgsp1_rep	CDS	11731711	11731797	.	-	0	Parent=Os12t0297500-01
Chr12	irgsp1_rep	CDS	11731540	11731626	.	-	0	Parent=Os12t0297500-01
Chr12	irgsp1_rep	CDS	11731388	11731464	.	-	0	Parent=Os12t0297500-01
Chr12	irgsp1_rep	CDS	11729443	11729605	.	-	1	Parent=Os12t0297500-01
Chr12	irgsp1_rep	CDS	11729206	11729335	.	-	0	Parent=Os12t0297500-01
Chr12	irgsp1_rep	CDS	11727799	11728700	.	-	2	Parent=Os12t0297500-01
Chr12	irgsp1_rep	three_prime_UTR	11727437	11727798	.	-	.	Parent=Os12t0297500-01
Chr12	irgsp1_rep	mRNA	11727604	11733120	.	-	.	ID=Os12t0297500-02;Name=Os12t0297500-02;Locus_id=Os12g0297500;Note=Similar to Phosphoglucan%2C water dikinase%2C chloroplastic.;Transcript_evidence=AK119246 (DDBJ%2C Best hit);ORF_evidence=Q2QTC2 (UniProt);GO=Biological Process: phosphorylation (GO:0016310),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524),Molecular Function: kinase activity (GO:0016301),Molecular Function: ligase activity (GO:0016874);InterPro=Pyruvate phosphate dikinase%2C PEP/pyruvate-binding (IPR002192),ATP-grasp fold%2C subdomain 1 (IPR013815),ATP-grasp fold%2C subdomain 2 (IPR013816);NIAS_FLcDNA=001-121-C04;Expression=AK119246;TENOR=Os12t0297500-02;KEGG=Os12t0297500-02
Chr12	irgsp1_rep	five_prime_UTR	11733079	11733120	.	-	.	Parent=Os12t0297500-02
Chr12	irgsp1_rep	five_prime_UTR	11732868	11732985	.	-	.	Parent=Os12t0297500-02
Chr12	irgsp1_rep	five_prime_UTR	11732725	11732745	.	-	.	Parent=Os12t0297500-02
Chr12	irgsp1_rep	CDS	11732716	11732724	.	-	0	Parent=Os12t0297500-02
Chr12	irgsp1_rep	CDS	11731711	11731797	.	-	0	Parent=Os12t0297500-02
Chr12	irgsp1_rep	CDS	11731540	11731626	.	-	0	Parent=Os12t0297500-02
Chr12	irgsp1_rep	CDS	11731388	11731464	.	-	0	Parent=Os12t0297500-02
Chr12	irgsp1_rep	CDS	11729443	11729605	.	-	1	Parent=Os12t0297500-02
Chr12	irgsp1_rep	CDS	11729206	11729335	.	-	0	Parent=Os12t0297500-02
Chr12	irgsp1_rep	CDS	11727799	11728700	.	-	2	Parent=Os12t0297500-02
Chr12	irgsp1_rep	three_prime_UTR	11727604	11727798	.	-	.	Parent=Os12t0297500-02
Chr12	irgsp1_rep	mRNA	11862663	11865799	.	+	.	ID=Os12t0298600-00;Name=Os12t0298600-00;Locus_id=Os12g0298600;Note=Histone H4 acetyltransferase%2C NuA4 complex%2C Eaf6 domain containing protein.;Transcript_evidence=CT830710 (DDBJ%2C Best hit);ORF_evidence=NP_001042511.2 (RefSeq);InterPro=Histone H4 acetyltransferase%2C NuA4 complex%2C Eaf6 (IPR015418);TENOR=Os12t0298600-00
Chr12	irgsp1_rep	five_prime_UTR	11862663	11862853	.	+	.	Parent=Os12t0298600-00
Chr12	irgsp1_rep	CDS	11862854	11863006	.	+	0	Parent=Os12t0298600-00
Chr12	irgsp1_rep	CDS	11863979	11864079	.	+	0	Parent=Os12t0298600-00
Chr12	irgsp1_rep	CDS	11864704	11864773	.	+	1	Parent=Os12t0298600-00
Chr12	irgsp1_rep	CDS	11864928	11864955	.	+	0	Parent=Os12t0298600-00
Chr12	irgsp1_rep	CDS	11865038	11865095	.	+	2	Parent=Os12t0298600-00
Chr12	irgsp1_rep	CDS	11865421	11865517	.	+	1	Parent=Os12t0298600-00
Chr12	irgsp1_rep	three_prime_UTR	11865518	11865799	.	+	.	Parent=Os12t0298600-00
Chr12	irgsp1_rep	mRNA	11867131	11871436	.	-	.	ID=Os12t0298950-00;Name=Os12t0298950-00;Locus_id=Os12g0298950;CGSNL Gene Symbol=CYCA1%3B3;CGSNL Gene Name=CYCLIN-A1-3;Oryzabase Gene Symbol Synonym(s)=cycA1%3B3%2C CycA1%3B3%2C CYCA1-3;Oryzabase Gene Name Synonym(s)=Cyclin-A1-3%2C G2/mitotic-specific cyclin-A1-3;Note=Similar to Cyclin-A1-3.;Transcript_evidence=tplb0028l11 (Wheat FLcDNA);ORF_evidence=Q0INT0 (UniProt);GO=Biological Process: regulation of cyclin-dependent protein kinase activity (GO:0000079),Biological Process: regulation of cell cycle (GO:0051726),Cellular Component: nucleus (GO:0005634),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin%2C C-terminal (IPR004367),Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763),Cyclin A/B/D/E (IPR014400);Oryzabase=6026;TENOR=Os12t0298950-00
Chr12	irgsp1_rep	five_prime_UTR	11871268	11871436	.	-	.	Parent=Os12t0298950-00
Chr12	irgsp1_rep	five_prime_UTR	11870453	11870458	.	-	.	Parent=Os12t0298950-00
Chr12	irgsp1_rep	CDS	11870164	11870452	.	-	0	Parent=Os12t0298950-00
Chr12	irgsp1_rep	CDS	11869677	11869826	.	-	2	Parent=Os12t0298950-00
Chr12	irgsp1_rep	CDS	11869437	11869570	.	-	2	Parent=Os12t0298950-00
Chr12	irgsp1_rep	CDS	11868636	11868728	.	-	0	Parent=Os12t0298950-00
Chr12	irgsp1_rep	CDS	11868407	11868540	.	-	0	Parent=Os12t0298950-00
Chr12	irgsp1_rep	CDS	11868244	11868319	.	-	1	Parent=Os12t0298950-00
Chr12	irgsp1_rep	CDS	11868103	11868179	.	-	0	Parent=Os12t0298950-00
Chr12	irgsp1_rep	CDS	11867988	11868021	.	-	1	Parent=Os12t0298950-00
Chr12	irgsp1_rep	CDS	11867753	11867902	.	-	0	Parent=Os12t0298950-00
Chr12	irgsp1_rep	CDS	11867509	11867643	.	-	0	Parent=Os12t0298950-00
Chr12	irgsp1_rep	CDS	11867357	11867428	.	-	0	Parent=Os12t0298950-00
Chr12	irgsp1_rep	three_prime_UTR	11867131	11867356	.	-	.	Parent=Os12t0298950-00
Chr12	irgsp1_rep	mRNA	11897803	11901061	.	-	.	ID=Os12t0299150-01;Name=Os12t0299150-01;Locus_id=Os12g0299150;Note=Conserved hypothetical protein.;Transcript_evidence=AK288577 (DDBJ%2C Best hit);ORF_evidence=NP_001176911.1 (RefSeq);NIAS_FLcDNA=J090049C11;TENOR=Os12t0299150-01;KEGG=Os12t0299150-01
Chr12	irgsp1_rep	five_prime_UTR	11899747	11901061	.	-	.	Parent=Os12t0299150-01
Chr12	irgsp1_rep	CDS	11899543	11899746	.	-	0	Parent=Os12t0299150-01
Chr12	irgsp1_rep	three_prime_UTR	11897803	11899542	.	-	.	Parent=Os12t0299150-01
Chr12	irgsp1_rep	mRNA	11904703	11907272	.	-	.	ID=Os12t0299300-01;Name=Os12t0299300-01;Locus_id=Os12g0299300;Note=Conserved hypothetical protein.;Transcript_evidence=AK103895 (DDBJ%2C Best hit);ORF_evidence=NP_001052884.1 (RefSeq);NIAS_FLcDNA=J033150G10;TENOR=Os12t0299300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	11906671	11907272	.	-	.	Parent=Os12t0299300-01
Chr12	irgsp1_rep	CDS	11906518	11906670	.	-	0	Parent=Os12t0299300-01
Chr12	irgsp1_rep	three_prime_UTR	11906338	11906517	.	-	.	Parent=Os12t0299300-01
Chr12	irgsp1_rep	three_prime_UTR	11904703	11905482	.	-	.	Parent=Os12t0299300-01
Chr12	irgsp1_rep	mRNA	11904810	11907178	.	-	.	ID=Os12t0299300-02;Name=Os12t0299300-02;Locus_id=Os12g0299300;Note=Conserved hypothetical protein.;Transcript_evidence=AK105662 (DDBJ%2C Best hit);ORF_evidence=NP_001052884.1 (RefSeq);NIAS_FLcDNA=001-200-H04;TENOR=Os12t0299300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	11906671	11907178	.	-	.	Parent=Os12t0299300-02
Chr12	irgsp1_rep	CDS	11906518	11906670	.	-	0	Parent=Os12t0299300-02
Chr12	irgsp1_rep	three_prime_UTR	11906338	11906517	.	-	.	Parent=Os12t0299300-02
Chr12	irgsp1_rep	three_prime_UTR	11904810	11905482	.	-	.	Parent=Os12t0299300-02
Chr12	irgsp1_rep	mRNA	11912016	11915164	.	-	.	ID=Os12t0299600-00;Name=Os12t0299600-00;Locus_id=Os12g0299600;Note=Hypothetical conserved gene.;Transcript_evidence=AK111398 (DDBJ%2C Secondary hit);ORF_evidence=NP_001176912.1 (RefSeq);GO=Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Putative harbinger transposase-derived nuclease (IPR006912);Expression=AK111398;TENOR=Os12t0299600-00;KEGG=Os12t0299600-00
Chr12	irgsp1_rep	five_prime_UTR	11914951	11915164	.	-	.	Parent=Os12t0299600-00
Chr12	irgsp1_rep	five_prime_UTR	11914796	11914923	.	-	.	Parent=Os12t0299600-00
Chr12	irgsp1_rep	five_prime_UTR	11913887	11913946	.	-	.	Parent=Os12t0299600-00
Chr12	irgsp1_rep	five_prime_UTR	11913385	11913403	.	-	.	Parent=Os12t0299600-00
Chr12	irgsp1_rep	CDS	11912893	11913384	.	-	0	Parent=Os12t0299600-00
Chr12	irgsp1_rep	CDS	11912102	11912797	.	-	0	Parent=Os12t0299600-00
Chr12	irgsp1_rep	three_prime_UTR	11912016	11912101	.	-	.	Parent=Os12t0299600-00
Chr12	irgsp1_rep	mRNA	11910147	11911770	.	-	.	ID=Os12t0299650-00;Name=Os12t0299650-00;Locus_id=Os12g0299650;Note=Myb/SANT-like domain domain containing protein.;Transcript_evidence=BT063151 (DDBJ);ORF_evidence=NP_001176912.1 (RefSeq);InterPro=Myb/SANT-like domain (IPR024752);TENOR=Os12t0299650-00
Chr12	irgsp1_rep	CDS	11911447	11911770	.	-	0	Parent=Os12t0299650-00
Chr12	irgsp1_rep	CDS	11911279	11911354	.	-	0	Parent=Os12t0299650-00
Chr12	irgsp1_rep	CDS	11910233	11910831	.	-	2	Parent=Os12t0299650-00
Chr12	irgsp1_rep	three_prime_UTR	11910147	11910232	.	-	.	Parent=Os12t0299650-00
Chr12	irgsp1_rep	mRNA	11915468	11918594	.	+	.	ID=Os12t0299700-01;Name=Os12t0299700-01;Locus_id=Os12g0299700;Note=NOP5%2C N-terminal domain containing protein.;Transcript_evidence=AK071145 (DDBJ%2C Best hit);ORF_evidence=Q2QT95 (UniProt);InterPro=NOP5%2C N-terminal (IPR012974);NIAS_FLcDNA=J023082N05;Expression=AK071145;TENOR=Os12t0299700-01;KEGG=Os12t0299700-01
Chr12	irgsp1_rep	five_prime_UTR	11915468	11915539	.	+	.	Parent=Os12t0299700-01
Chr12	irgsp1_rep	CDS	11915540	11915645	.	+	0	Parent=Os12t0299700-01
Chr12	irgsp1_rep	CDS	11916031	11916140	.	+	2	Parent=Os12t0299700-01
Chr12	irgsp1_rep	CDS	11916236	11916277	.	+	0	Parent=Os12t0299700-01
Chr12	irgsp1_rep	CDS	11917245	11917412	.	+	0	Parent=Os12t0299700-01
Chr12	irgsp1_rep	CDS	11917488	11917664	.	+	0	Parent=Os12t0299700-01
Chr12	irgsp1_rep	CDS	11917830	11918033	.	+	0	Parent=Os12t0299700-01
Chr12	irgsp1_rep	CDS	11918107	11918301	.	+	0	Parent=Os12t0299700-01
Chr12	irgsp1_rep	three_prime_UTR	11918302	11918594	.	+	.	Parent=Os12t0299700-01
Chr12	irgsp1_rep	mRNA	12075140	12083362	.	+	.	ID=Os12t0403800-01;Name=Os12t0403800-01;Locus_id=Os12g0403800;Note=Similar to Exosome complex exonuclease RRP42.;Transcript_evidence=AK059940 (DDBJ%2C Best hit);ORF_evidence=B6TKK3 (UniProt);InterPro=Exoribonuclease%2C phosphorolytic domain 1 (IPR001247),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=006-210-F07;Expression=AK059940;TENOR=Os12t0403800-01;KEGG=Os12t0403800-01
Chr12	irgsp1_rep	five_prime_UTR	12075140	12075472	.	+	.	Parent=Os12t0403800-01
Chr12	irgsp1_rep	CDS	12075473	12075637	.	+	0	Parent=Os12t0403800-01
Chr12	irgsp1_rep	CDS	12075718	12075774	.	+	0	Parent=Os12t0403800-01
Chr12	irgsp1_rep	CDS	12077264	12077356	.	+	0	Parent=Os12t0403800-01
Chr12	irgsp1_rep	CDS	12080530	12080608	.	+	0	Parent=Os12t0403800-01
Chr12	irgsp1_rep	CDS	12083045	12083067	.	+	2	Parent=Os12t0403800-01
Chr12	irgsp1_rep	three_prime_UTR	12083068	12083362	.	+	.	Parent=Os12t0403800-01
Chr12	irgsp1_rep	mRNA	12075143	12087665	.	+	.	ID=Os12t0403800-02;Name=Os12t0403800-02;Locus_id=Os12g0403800;Note=Exoribonuclease domain containing protein.;Transcript_evidence=AK064189 (DDBJ%2C Best hit);ORF_evidence=B6TKK3 (UniProt);GO=Biological Process: RNA processing (GO:0006396),Molecular Function: RNA binding (GO:0003723);InterPro=Exoribonuclease%2C phosphorolytic domain 1 (IPR001247),Exoribonuclease%2C phosphorolytic domain 2 (IPR015847),Ribosomal protein S5 domain 2-type fold (IPR020568);NIAS_FLcDNA=002-104-C05;Expression=AK064189;TENOR=Os12t0403800-02;KEGG=Os12t0403800-02
Chr12	irgsp1_rep	five_prime_UTR	12075143	12075406	.	+	.	Parent=Os12t0403800-02
Chr12	irgsp1_rep	five_prime_UTR	12075487	12075511	.	+	.	Parent=Os12t0403800-02
Chr12	irgsp1_rep	CDS	12075512	12075637	.	+	0	Parent=Os12t0403800-02
Chr12	irgsp1_rep	CDS	12075718	12075774	.	+	0	Parent=Os12t0403800-02
Chr12	irgsp1_rep	CDS	12077264	12077356	.	+	0	Parent=Os12t0403800-02
Chr12	irgsp1_rep	CDS	12080530	12080608	.	+	0	Parent=Os12t0403800-02
Chr12	irgsp1_rep	CDS	12083001	12083125	.	+	2	Parent=Os12t0403800-02
Chr12	irgsp1_rep	CDS	12086152	12086295	.	+	0	Parent=Os12t0403800-02
Chr12	irgsp1_rep	CDS	12087190	12087420	.	+	0	Parent=Os12t0403800-02
Chr12	irgsp1_rep	three_prime_UTR	12087421	12087665	.	+	.	Parent=Os12t0403800-02
Chr12	irgsp1_rep	mRNA	12122123	12133440	.	-	.	ID=Os12t0404400-01;Name=Os12t0404400-01;Locus_id=Os12g0404400;Note=Non-protein coding transcript.;Transcript_evidence=AK101768 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J033064G18;TENOR=Os12t0404400-01
Chr12	irgsp1_rep	exon	12132840	12133440	.	-	.	Parent=Os12t0404400-01
Chr12	irgsp1_rep	exon	12132281	12132361	.	-	.	Parent=Os12t0404400-01
Chr12	irgsp1_rep	exon	12131037	12131153	.	-	.	Parent=Os12t0404400-01
Chr12	irgsp1_rep	exon	12124558	12124704	.	-	.	Parent=Os12t0404400-01
Chr12	irgsp1_rep	exon	12124076	12124139	.	-	.	Parent=Os12t0404400-01
Chr12	irgsp1_rep	exon	12123001	12123055	.	-	.	Parent=Os12t0404400-01
Chr12	irgsp1_rep	exon	12122123	12122456	.	-	.	Parent=Os12t0404400-01
Chr12	irgsp1_rep	mRNA	12195260	12202939	.	+	.	ID=Os12t0405100-01;Name=Os12t0405100-01;Locus_id=Os12g0405100;CGSNL Gene Symbol=C3H66;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66;Oryzabase Gene Symbol Synonym(s)=OsC3H66;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 66;Note=Similar to Floral homeotic protein HUA1.;Transcript_evidence=AK111511 (DDBJ%2C Best hit);ORF_evidence=Q9SWF9 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571);NIAS_FLcDNA=J013001J05;Oryzabase=8631;Expression=AK111511;TENOR=Os12t0405100-01;KEGG=Os12t0405100-01
Chr12	irgsp1_rep	five_prime_UTR	12195260	12195436	.	+	.	Parent=Os12t0405100-01
Chr12	irgsp1_rep	CDS	12195437	12195569	.	+	0	Parent=Os12t0405100-01
Chr12	irgsp1_rep	CDS	12196956	12197113	.	+	2	Parent=Os12t0405100-01
Chr12	irgsp1_rep	CDS	12198078	12198140	.	+	0	Parent=Os12t0405100-01
Chr12	irgsp1_rep	CDS	12198827	12198946	.	+	0	Parent=Os12t0405100-01
Chr12	irgsp1_rep	CDS	12199066	12199362	.	+	0	Parent=Os12t0405100-01
Chr12	irgsp1_rep	CDS	12200690	12201013	.	+	0	Parent=Os12t0405100-01
Chr12	irgsp1_rep	CDS	12202089	12202358	.	+	0	Parent=Os12t0405100-01
Chr12	irgsp1_rep	three_prime_UTR	12202359	12202939	.	+	.	Parent=Os12t0405100-01
Chr12	irgsp1_rep	mRNA	12204465	12207672	.	+	.	ID=Os12t0405200-01;Name=Os12t0405200-01;Locus_id=Os12g0405200;RAP-DB Gene Symbol Synonym(s)=T20%2C HTD12;RAP-DB Gene Name Synonym(s)=tillering20%2C HIGH-TILLERING AND DWARF 12;Note=Chloroplast &zeta%3B-carotene isomerase (Z-ISO)%2C Carotenoid biosynthesis%2C Biosynthesis of strigolactone and abscisic acid%2C Regulation of tillering%2C Abiotic stress tolerance%2C Regulation of photosynthesis and chloroplast development;Transcript_evidence=AK066126;ORF_evidence=Q2QT64;InterPro=NnrU domain (IPR009915);NIAS_FLcDNA=J013058N03;Manual Curation=October 26%2C 2020;Literature_PMID=33097962,33038484;Expression=AK066126;TENOR=Os12t0405200-01;KEGG=Os12t0405200-01;Subcellular location=chloroplast (GO:0009507)
Chr12	irgsp1_rep	five_prime_UTR	12204465	12204528	.	+	.	Parent=Os12t0405200-01
Chr12	irgsp1_rep	CDS	12204529	12204939	.	+	0	Parent=Os12t0405200-01
Chr12	irgsp1_rep	CDS	12206539	12206685	.	+	0	Parent=Os12t0405200-01
Chr12	irgsp1_rep	CDS	12206773	12206982	.	+	0	Parent=Os12t0405200-01
Chr12	irgsp1_rep	CDS	12207130	12207465	.	+	0	Parent=Os12t0405200-01
Chr12	irgsp1_rep	three_prime_UTR	12207466	12207672	.	+	.	Parent=Os12t0405200-01
Chr12	irgsp1_rep	mRNA	12221399	12223748	.	-	.	ID=Os12t0405300-01;Name=Os12t0405300-01;Locus_id=Os12g0405300;Note=Conserved hypothetical protein.;Transcript_evidence=AK070969 (DDBJ%2C Best hit);ORF_evidence=B9FY80 (UniProt);NIAS_FLcDNA=J023070P10;TENOR=Os12t0405300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	12222621	12223748	.	-	.	Parent=Os12t0405300-01
Chr12	irgsp1_rep	five_prime_UTR	12222331	12222493	.	-	.	Parent=Os12t0405300-01
Chr12	irgsp1_rep	CDS	12222154	12222330	.	-	0	Parent=Os12t0405300-01
Chr12	irgsp1_rep	three_prime_UTR	12221399	12222153	.	-	.	Parent=Os12t0405300-01
Chr12	irgsp1_rep	mRNA	12224008	12228027	.	+	.	ID=Os12t0405400-01;Name=Os12t0405400-01;Locus_id=Os12g0405400;Note=Conserved hypothetical protein.;Transcript_evidence=AK099960 (DDBJ%2C Best hit);ORF_evidence=B9EWT4 (UniProt);NIAS_FLcDNA=J013126F11;TENOR=Os12t0405400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	12224008	12224381	.	+	.	Parent=Os12t0405400-01
Chr12	irgsp1_rep	five_prime_UTR	12226045	12226820	.	+	.	Parent=Os12t0405400-01
Chr12	irgsp1_rep	CDS	12226821	12227006	.	+	0	Parent=Os12t0405400-01
Chr12	irgsp1_rep	three_prime_UTR	12227007	12228027	.	+	.	Parent=Os12t0405400-01
Chr12	irgsp1_rep	mRNA	12224011	12228537	.	+	.	ID=Os12t0405400-02;Name=Os12t0405400-02;Locus_id=Os12g0405400;Note=Conserved hypothetical protein.;Transcript_evidence=AK066879 (DDBJ%2C Best hit);ORF_evidence=B9EWT4 (UniProt);NIAS_FLcDNA=J013087E21;TENOR=Os12t0405400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	12224011	12224381	.	+	.	Parent=Os12t0405400-02
Chr12	irgsp1_rep	five_prime_UTR	12226045	12226209	.	+	.	Parent=Os12t0405400-02
Chr12	irgsp1_rep	five_prime_UTR	12226431	12226489	.	+	.	Parent=Os12t0405400-02
Chr12	irgsp1_rep	five_prime_UTR	12226677	12226820	.	+	.	Parent=Os12t0405400-02
Chr12	irgsp1_rep	CDS	12226821	12227006	.	+	0	Parent=Os12t0405400-02
Chr12	irgsp1_rep	three_prime_UTR	12227007	12228312	.	+	.	Parent=Os12t0405400-02
Chr12	irgsp1_rep	three_prime_UTR	12228409	12228537	.	+	.	Parent=Os12t0405400-02
Chr12	irgsp1_rep	mRNA	12240426	12242537	.	+	.	ID=Os12t0405700-01;Name=Os12t0405700-01;Locus_id=Os12g0405700;Note=Similar to Wound-induced basic protein.;Transcript_evidence=AK061920 (DDBJ%2C Best hit);ORF_evidence=Q09020 (UniProt);InterPro=Wound-inducible basic (IPR012643);NIAS_FLcDNA=001-042-B08;Expression=AK061920;TENOR=Os12t0405700-01;KEGG=Os12t0405700-01
Chr12	irgsp1_rep	five_prime_UTR	12240426	12240517	.	+	.	Parent=Os12t0405700-01
Chr12	irgsp1_rep	CDS	12240518	12240591	.	+	0	Parent=Os12t0405700-01
Chr12	irgsp1_rep	CDS	12242308	12242380	.	+	1	Parent=Os12t0405700-01
Chr12	irgsp1_rep	three_prime_UTR	12242381	12242537	.	+	.	Parent=Os12t0405700-01
Chr12	irgsp1_rep	mRNA	12240457	12242535	.	+	.	ID=Os12t0405700-02;Name=Os12t0405700-02;Locus_id=Os12g0405700;Note=Similar to Wound-induced basic protein.;Transcript_evidence=AK120436 (DDBJ%2C Best hit);ORF_evidence=Q09020 (UniProt);InterPro=Wound-inducible basic (IPR012643);NIAS_FLcDNA=J013098D06;Expression=AK120436;TENOR=Os12t0405700-02;KEGG=Os12t0405700-02
Chr12	irgsp1_rep	five_prime_UTR	12240457	12240517	.	+	.	Parent=Os12t0405700-02
Chr12	irgsp1_rep	CDS	12240518	12240591	.	+	0	Parent=Os12t0405700-02
Chr12	irgsp1_rep	CDS	12242308	12242380	.	+	1	Parent=Os12t0405700-02
Chr12	irgsp1_rep	three_prime_UTR	12242381	12242535	.	+	.	Parent=Os12t0405700-02
Chr12	irgsp1_rep	mRNA	12258469	12262067	.	-	.	ID=Os12t0406000-01;Name=Os12t0406000-01;Locus_id=Os12g0406000;Note=Conserved hypothetical protein.;Transcript_evidence=AK065509 (DDBJ%2C Best hit);ORF_evidence=NP_001064386.1 (RefSeq);NIAS_FLcDNA=J013027N08;Oryzabase=23126;TENOR=Os12t0406000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	12262062	12262067	.	-	.	Parent=Os12t0406000-01
Chr12	irgsp1_rep	CDS	12261774	12262061	.	-	0	Parent=Os12t0406000-01
Chr12	irgsp1_rep	three_prime_UTR	12259391	12261773	.	-	.	Parent=Os12t0406000-01
Chr12	irgsp1_rep	three_prime_UTR	12258469	12258834	.	-	.	Parent=Os12t0406000-01
Chr12	irgsp1_rep	mRNA	12258486	12258834	.	-	.	ID=Os12t0406000-02;Name=Os12t0406000-02;Locus_id=Os12g0406000;Note=Hypothetical conserved gene.;Transcript_evidence=AK059706 (DDBJ%2C Best hit);ORF_evidence=Q7XQX0 (UniProt);NIAS_FLcDNA=001-032-E02;Oryzabase=23126;Expression=AK059706;TENOR=Os12t0406000-02;KEGG=Os12t0406000-02
Chr12	irgsp1_rep	five_prime_UTR	12258715	12258834	.	-	.	Parent=Os12t0406000-02
Chr12	irgsp1_rep	CDS	12258580	12258714	.	-	0	Parent=Os12t0406000-02
Chr12	irgsp1_rep	three_prime_UTR	12258486	12258579	.	-	.	Parent=Os12t0406000-02
Chr12	irgsp1_rep	mRNA	12264732	12267518	.	-	.	ID=Os12t0406100-01;Name=Os12t0406100-01;Locus_id=Os12g0406100;Note=Glycoside hydrolase%2C family 43 protein.;Transcript_evidence=AK070373 (DDBJ%2C Best hit);ORF_evidence=NP_001151925.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553);InterPro=Glycoside hydrolase%2C family 43 (IPR006710),Glycosyl hydrolase family 43%2C five-bladed beta-propellor domain (IPR023296);NIAS_FLcDNA=J023054E09;Expression=AK070373;TENOR=Os12t0406100-01;KEGG=Os12t0406100-01
Chr12	irgsp1_rep	five_prime_UTR	12267317	12267518	.	-	.	Parent=Os12t0406100-01
Chr12	irgsp1_rep	CDS	12266765	12267316	.	-	0	Parent=Os12t0406100-01
Chr12	irgsp1_rep	CDS	12265010	12265858	.	-	0	Parent=Os12t0406100-01
Chr12	irgsp1_rep	three_prime_UTR	12264732	12265009	.	-	.	Parent=Os12t0406100-01
Chr12	irgsp1_rep	mRNA	12270569	12274367	.	-	.	ID=Os12t0406200-01;Name=Os12t0406200-01;Locus_id=Os12g0406200;Note=Similar to 40S ribosomal protein S3a (CYC07 protein).;Transcript_evidence=AK071037 (DDBJ%2C Best hit);ORF_evidence=GeneMark;GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S3Ae (IPR001593),Ribosomal protein S3Ae%2C conserved site (IPR018281);NIAS_FLcDNA=J023079A13;Expression=AK071037;TENOR=Os12t0406200-01;KEGG=Os12t0406200-01
Chr12	irgsp1_rep	five_prime_UTR	12274266	12274367	.	-	.	Parent=Os12t0406200-01
Chr12	irgsp1_rep	CDS	12274207	12274265	.	-	0	Parent=Os12t0406200-01
Chr12	irgsp1_rep	CDS	12273989	12274094	.	-	1	Parent=Os12t0406200-01
Chr12	irgsp1_rep	CDS	12271548	12271685	.	-	0	Parent=Os12t0406200-01
Chr12	irgsp1_rep	CDS	12271290	12271475	.	-	0	Parent=Os12t0406200-01
Chr12	irgsp1_rep	CDS	12270978	12271178	.	-	0	Parent=Os12t0406200-01
Chr12	irgsp1_rep	CDS	12270802	12270894	.	-	0	Parent=Os12t0406200-01
Chr12	irgsp1_rep	three_prime_UTR	12270569	12270801	.	-	.	Parent=Os12t0406200-01
Chr12	irgsp1_rep	mRNA	12276607	12282863	.	-	.	ID=Os12t0406333-00;Name=Os12t0406333-00;Locus_id=Os12g0406333;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QT54 (UniProt);TENOR=Os12t0406333-00
Chr12	irgsp1_rep	CDS	12282798	12282863	.	-	0	Parent=Os12t0406333-00
Chr12	irgsp1_rep	CDS	12282127	12282249	.	-	0	Parent=Os12t0406333-00
Chr12	irgsp1_rep	CDS	12276607	12276795	.	-	0	Parent=Os12t0406333-00
Chr12	irgsp1_rep	mRNA	12298858	12302210	.	+	.	ID=Os12t0406732-00;Name=Os12t0406732-00;Locus_id=Os12g0406732;Note=Hypothetical conserved gene.;Transcript_evidence=AK106716 (DDBJ%2C Secondary hit);ORF_evidence=B9FDU8 (UniProt);Expression=AK106716;TENOR=Os12t0406732-00;KEGG=Os12t0406732-00
Chr12	irgsp1_rep	five_prime_UTR	12298858	12298859	.	+	.	Parent=Os12t0406732-00
Chr12	irgsp1_rep	CDS	12298860	12299180	.	+	0	Parent=Os12t0406732-00
Chr12	irgsp1_rep	three_prime_UTR	12299181	12299349	.	+	.	Parent=Os12t0406732-00
Chr12	irgsp1_rep	three_prime_UTR	12299365	12299416	.	+	.	Parent=Os12t0406732-00
Chr12	irgsp1_rep	three_prime_UTR	12299745	12299817	.	+	.	Parent=Os12t0406732-00
Chr12	irgsp1_rep	three_prime_UTR	12300883	12300998	.	+	.	Parent=Os12t0406732-00
Chr12	irgsp1_rep	three_prime_UTR	12301006	12301059	.	+	.	Parent=Os12t0406732-00
Chr12	irgsp1_rep	three_prime_UTR	12301698	12302001	.	+	.	Parent=Os12t0406732-00
Chr12	irgsp1_rep	three_prime_UTR	12302014	12302210	.	+	.	Parent=Os12t0406732-00
Chr12	irgsp1_rep	mRNA	12303450	12304062	.	-	.	ID=Os12t0407000-00;Name=Os12t0407000-00;Locus_id=Os12g0407000;CGSNL Gene Symbol=MADS73;CGSNL Gene Name=MADS BOX GENE 73;Oryzabase Gene Symbol Synonym(s)=OsMADS73;Oryzabase Gene Name Synonym(s)=MADS box gene73%2C MADS box gene 73%2C MADS-box transcription factor 73;Note=Similar to SRF-type transcription factor family protein%2C expressed.;Transcript_evidence=EU969208 (DDBJ);ORF_evidence=Q2QT50 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box (IPR002100);Oryzabase=12309;TENOR=Os12t0407000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	12303478	12304062	.	-	0	Parent=Os12t0407000-00
Chr12	irgsp1_rep	three_prime_UTR	12303450	12303477	.	-	.	Parent=Os12t0407000-00
Chr12	irgsp1_rep	mRNA	12305767	12309040	.	+	.	ID=Os12t0407100-01;Name=Os12t0407100-01;Locus_id=Os12g0407100;Note=Conserved hypothetical protein.;Transcript_evidence=AK243210 (DDBJ%2C Best hit);ORF_evidence=B9GCS5 (UniProt);NIAS_FLcDNA=J100042D22;TENOR=Os12t0407100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	12305767	12306215	.	+	.	Parent=Os12t0407100-01
Chr12	irgsp1_rep	five_prime_UTR	12306297	12307632	.	+	.	Parent=Os12t0407100-01
Chr12	irgsp1_rep	CDS	12307633	12307725	.	+	0	Parent=Os12t0407100-01
Chr12	irgsp1_rep	CDS	12307979	12308059	.	+	0	Parent=Os12t0407100-01
Chr12	irgsp1_rep	CDS	12308303	12308377	.	+	0	Parent=Os12t0407100-01
Chr12	irgsp1_rep	three_prime_UTR	12308378	12309040	.	+	.	Parent=Os12t0407100-01
Chr12	irgsp1_rep	mRNA	12312393	12314511	.	-	.	ID=Os12t0407200-01;Name=Os12t0407200-01;Locus_id=Os12g0407200;Note=Tensin phosphatase%2C C2 domain domain containing protein.;Transcript_evidence=AK064410 (DDBJ%2C Best hit);ORF_evidence=NP_188573.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Tensin phosphatase%2C C2 domain (IPR014020);NIAS_FLcDNA=002-110-A04;Expression=AK064410;TENOR=Os12t0407200-01;KEGG=Os12t0407200-01
Chr12	irgsp1_rep	five_prime_UTR	12313567	12314511	.	-	.	Parent=Os12t0407200-01
Chr12	irgsp1_rep	CDS	12313400	12313566	.	-	0	Parent=Os12t0407200-01
Chr12	irgsp1_rep	CDS	12313010	12313181	.	-	1	Parent=Os12t0407200-01
Chr12	irgsp1_rep	three_prime_UTR	12312393	12313009	.	-	.	Parent=Os12t0407200-01
Chr12	irgsp1_rep	mRNA	12314031	12315826	.	+	.	ID=Os12t0407250-01;Name=Os12t0407250-01;Locus_id=Os12g0407250;Note=Non-protein coding transcript.;Transcript_evidence=AK064452 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-110-F07;TENOR=Os12t0407250-01
Chr12	irgsp1_rep	exon	12314031	12315547	.	+	.	Parent=Os12t0407250-01
Chr12	irgsp1_rep	exon	12315611	12315826	.	+	.	Parent=Os12t0407250-01
Chr12	irgsp1_rep	mRNA	12315850	12318391	.	-	.	ID=Os12t0407300-01;Name=Os12t0407300-01;Locus_id=Os12g0407300;Note=Similar to intron maturase%2C type II family protein.;Transcript_evidence=AK119778 (DDBJ%2C Best hit);ORF_evidence=NP_174294.1 (RefSeq);GO=Biological Process: RNA-dependent DNA replication (GO:0006278),Biological Process: mRNA processing (GO:0006397),Cellular Component: chloroplast (GO:0009507),Molecular Function: RNA binding (GO:0003723),Molecular Function: RNA-directed DNA polymerase activity (GO:0003964);InterPro=Reverse transcriptase (IPR000477),Maturase%2C MatK (IPR002866);NIAS_FLcDNA=002-172-H12;TENOR=Os12t0407300-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	12318343	12318391	.	-	.	Parent=Os12t0407300-01
Chr12	irgsp1_rep	CDS	12316216	12318342	.	-	0	Parent=Os12t0407300-01
Chr12	irgsp1_rep	three_prime_UTR	12315850	12316215	.	-	.	Parent=Os12t0407300-01
Chr12	irgsp1_rep	mRNA	12319463	12319735	.	-	.	ID=Os12t0407350-00;Name=Os12t0407350-00;Locus_id=Os12g0407350;Note=Non-protein coding transcript.;Transcript_evidence=CT835581 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os12t0407350-00
Chr12	irgsp1_rep	exon	12319463	12319735	.	-	.	Parent=Os12t0407350-00
Chr12	irgsp1_rep	mRNA	12321685	12330180	.	-	.	ID=Os12t0407500-01;Name=Os12t0407500-01;Locus_id=Os12g0407500;Oryzabase Gene Symbol Synonym(s)=OsPP130;Oryzabase Gene Name Synonym(s)=Protein phosphatase 130;Note=Tensin phosphatase%2C C2 domain domain containing protein.;Transcript_evidence=AK100320 (DDBJ%2C Best hit);ORF_evidence=NP_188573.1 (RefSeq);GO=Biological Process: dephosphorylation (GO:0016311),Molecular Function: protein tyrosine phosphatase activity (GO:0004725),Molecular Function: protein binding (GO:0005515),Molecular Function: phosphatase activity (GO:0016791);InterPro=C2 calcium/lipid-binding domain%2C CaLB (IPR008973),Phosphatase tensin type (IPR014019),Tensin phosphatase%2C C2 domain (IPR014020),Protein-tyrosine phosphatase%2C active site (IPR016130);NIAS_FLcDNA=J023079D17;Oryzabase=18665;Expression=AK100320;TENOR=Os12t0407500-01;KEGG=Os12t0407500-01 (EC:3.1.3.67)
Chr12	irgsp1_rep	five_prime_UTR	12330023	12330180	.	-	.	Parent=Os12t0407500-01
Chr12	irgsp1_rep	five_prime_UTR	12329232	12329282	.	-	.	Parent=Os12t0407500-01
Chr12	irgsp1_rep	CDS	12328695	12329231	.	-	0	Parent=Os12t0407500-01
Chr12	irgsp1_rep	CDS	12327426	12327527	.	-	0	Parent=Os12t0407500-01
Chr12	irgsp1_rep	CDS	12327285	12327341	.	-	0	Parent=Os12t0407500-01
Chr12	irgsp1_rep	CDS	12326649	12326714	.	-	0	Parent=Os12t0407500-01
Chr12	irgsp1_rep	CDS	12325977	12326153	.	-	0	Parent=Os12t0407500-01
Chr12	irgsp1_rep	CDS	12325782	12325868	.	-	0	Parent=Os12t0407500-01
Chr12	irgsp1_rep	CDS	12325640	12325704	.	-	0	Parent=Os12t0407500-01
Chr12	irgsp1_rep	CDS	12325480	12325556	.	-	1	Parent=Os12t0407500-01
Chr12	irgsp1_rep	CDS	12325304	12325350	.	-	2	Parent=Os12t0407500-01
Chr12	irgsp1_rep	CDS	12324259	12324389	.	-	0	Parent=Os12t0407500-01
Chr12	irgsp1_rep	CDS	12323971	12324040	.	-	1	Parent=Os12t0407500-01
Chr12	irgsp1_rep	CDS	12321936	12322496	.	-	0	Parent=Os12t0407500-01
Chr12	irgsp1_rep	three_prime_UTR	12321685	12321935	.	-	.	Parent=Os12t0407500-01
Chr12	irgsp1_rep	mRNA	12321682	12326040	.	-	.	ID=Os12t0407500-02;Name=Os12t0407500-02;Locus_id=Os12g0407500;Oryzabase Gene Symbol Synonym(s)=OsPP130;Oryzabase Gene Name Synonym(s)=Protein phosphatase 130;Note=Similar to PTEN-like protein.;Transcript_evidence=AK062213 (DDBJ%2C Best hit);ORF_evidence=NP_188573.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=C2 calcium/lipid-binding domain%2C CaLB (IPR008973),Phosphatase tensin type (IPR014019),Tensin phosphatase%2C C2 domain (IPR014020);NIAS_FLcDNA=001-047-A07;Oryzabase=18665;Expression=AK062213;TENOR=Os12t0407500-02;KEGG=Os12t0407500-02 (EC:3.1.3.67)
Chr12	irgsp1_rep	five_prime_UTR	12326040	12326040	.	-	.	Parent=Os12t0407500-02
Chr12	irgsp1_rep	CDS	12325977	12326039	.	-	0	Parent=Os12t0407500-02
Chr12	irgsp1_rep	CDS	12325782	12325868	.	-	0	Parent=Os12t0407500-02
Chr12	irgsp1_rep	CDS	12325640	12325704	.	-	0	Parent=Os12t0407500-02
Chr12	irgsp1_rep	CDS	12325480	12325556	.	-	1	Parent=Os12t0407500-02
Chr12	irgsp1_rep	CDS	12325304	12325350	.	-	2	Parent=Os12t0407500-02
Chr12	irgsp1_rep	CDS	12324259	12324389	.	-	0	Parent=Os12t0407500-02
Chr12	irgsp1_rep	CDS	12323971	12324040	.	-	1	Parent=Os12t0407500-02
Chr12	irgsp1_rep	CDS	12321936	12322496	.	-	0	Parent=Os12t0407500-02
Chr12	irgsp1_rep	three_prime_UTR	12321682	12321935	.	-	.	Parent=Os12t0407500-02
Chr12	irgsp1_rep	mRNA	12339348	12339798	.	+	.	ID=Os12t0407750-00;Name=Os12t0407750-00;Locus_id=Os12g0407750;Note=Hypothetical protein.;Transcript_evidence=EU976224 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0407750-00
Chr12	irgsp1_rep	five_prime_UTR	12339348	12339401	.	+	.	Parent=Os12t0407750-00
Chr12	irgsp1_rep	CDS	12339402	12339798	.	+	0	Parent=Os12t0407750-00
Chr12	irgsp1_rep	mRNA	12349459	12350966	.	+	.	ID=Os12t0407900-01;Name=Os12t0407900-01;Locus_id=Os12g0407900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK106427 (DDBJ%2C Best hit);ORF_evidence=A2ZJS4 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);NIAS_FLcDNA=002-103-B10;Expression=AK106427;TENOR=Os12t0407900-01;KEGG=Os12t0407900-01
Chr12	irgsp1_rep	five_prime_UTR	12349459	12349504	.	+	.	Parent=Os12t0407900-01
Chr12	irgsp1_rep	CDS	12349505	12350884	.	+	0	Parent=Os12t0407900-01
Chr12	irgsp1_rep	three_prime_UTR	12350885	12350966	.	+	.	Parent=Os12t0407900-01
Chr12	irgsp1_rep	mRNA	12354378	12356834	.	-	.	ID=Os12t0408000-01;Name=Os12t0408000-01;Locus_id=Os12g0408000;Note=Protein of unknown function DUF594 domain containing protein.;Transcript_evidence=AK109709 (DDBJ%2C Best hit);ORF_evidence=Q2QT41 (UniProt);InterPro=Protein of unknown function DUF594 (IPR007658);NIAS_FLcDNA=002-145-G11;TENOR=Os12t0408000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	12356833	12356834	.	-	.	Parent=Os12t0408000-01
Chr12	irgsp1_rep	CDS	12356796	12356832	.	-	0	Parent=Os12t0408000-01
Chr12	irgsp1_rep	CDS	12354615	12356692	.	-	2	Parent=Os12t0408000-01
Chr12	irgsp1_rep	three_prime_UTR	12354378	12354614	.	-	.	Parent=Os12t0408000-01
Chr12	irgsp1_rep	mRNA	12354567	12356767	.	+	.	ID=Os12t0408100-01;Name=Os12t0408100-01;Locus_id=Os12g0408100;Note=Hypothetical protein.;Transcript_evidence=AK106584 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-111-E07;Expression=AK106584;TENOR=Os12t0408100-01;KEGG=Os12t0408100-01
Chr12	irgsp1_rep	five_prime_UTR	12354567	12356351	.	+	.	Parent=Os12t0408100-01
Chr12	irgsp1_rep	CDS	12356352	12356696	.	+	0	Parent=Os12t0408100-01
Chr12	irgsp1_rep	three_prime_UTR	12356697	12356767	.	+	.	Parent=Os12t0408100-01
Chr12	irgsp1_rep	mRNA	12377948	12383372	.	-	.	ID=Os12t0408800-01;Name=Os12t0408800-01;Locus_id=Os12g0408800;Note=Conserved hypothetical protein.;Transcript_evidence=AK073688 (DDBJ%2C Best hit);ORF_evidence=Q2QT34 (UniProt);NIAS_FLcDNA=J033055G20;TENOR=Os12t0408800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	12382836	12383372	.	-	.	Parent=Os12t0408800-01
Chr12	irgsp1_rep	five_prime_UTR	12382043	12382175	.	-	.	Parent=Os12t0408800-01
Chr12	irgsp1_rep	five_prime_UTR	12381391	12381471	.	-	.	Parent=Os12t0408800-01
Chr12	irgsp1_rep	five_prime_UTR	12380642	12380685	.	-	.	Parent=Os12t0408800-01
Chr12	irgsp1_rep	five_prime_UTR	12380265	12380340	.	-	.	Parent=Os12t0408800-01
Chr12	irgsp1_rep	five_prime_UTR	12379868	12379979	.	-	.	Parent=Os12t0408800-01
Chr12	irgsp1_rep	five_prime_UTR	12379673	12379762	.	-	.	Parent=Os12t0408800-01
Chr12	irgsp1_rep	five_prime_UTR	12379190	12379552	.	-	.	Parent=Os12t0408800-01
Chr12	irgsp1_rep	five_prime_UTR	12378955	12379085	.	-	.	Parent=Os12t0408800-01
Chr12	irgsp1_rep	CDS	12378952	12378954	.	-	0	Parent=Os12t0408800-01
Chr12	irgsp1_rep	CDS	12377948	12378198	.	-	0	Parent=Os12t0408800-01
Chr12	irgsp1_rep	mRNA	12379507	12383289	.	-	.	ID=Os12t0408800-02;Name=Os12t0408800-02;Locus_id=Os12g0408800;Note=Hypothetical conserved gene.;Transcript_evidence=AK059660 (DDBJ%2C Best hit);ORF_evidence=Q2QT34 (UniProt);NIAS_FLcDNA=001-031-E01;Expression=AK059660;TENOR=Os12t0408800-02;KEGG=Os12t0408800-02
Chr12	irgsp1_rep	five_prime_UTR	12382836	12383289	.	-	.	Parent=Os12t0408800-02
Chr12	irgsp1_rep	five_prime_UTR	12382084	12382171	.	-	.	Parent=Os12t0408800-02
Chr12	irgsp1_rep	CDS	12382043	12382083	.	-	0	Parent=Os12t0408800-02
Chr12	irgsp1_rep	CDS	12381391	12381471	.	-	1	Parent=Os12t0408800-02
Chr12	irgsp1_rep	CDS	12380658	12380685	.	-	1	Parent=Os12t0408800-02
Chr12	irgsp1_rep	three_prime_UTR	12380642	12380657	.	-	.	Parent=Os12t0408800-02
Chr12	irgsp1_rep	three_prime_UTR	12380265	12380340	.	-	.	Parent=Os12t0408800-02
Chr12	irgsp1_rep	three_prime_UTR	12379507	12379979	.	-	.	Parent=Os12t0408800-02
Chr12	irgsp1_rep	mRNA	12378739	12383273	.	-	.	ID=Os12t0408800-03;Name=Os12t0408800-03;Locus_id=Os12g0408800;Note=Hypothetical conserved gene.;Transcript_evidence=AK068032 (DDBJ%2C Best hit);ORF_evidence=Q2QT34 (UniProt);NIAS_FLcDNA=J013131D11;Expression=AK068032;TENOR=Os12t0408800-03;KEGG=Os12t0408800-03
Chr12	irgsp1_rep	five_prime_UTR	12381391	12383273	.	-	.	Parent=Os12t0408800-03
Chr12	irgsp1_rep	five_prime_UTR	12380642	12380685	.	-	.	Parent=Os12t0408800-03
Chr12	irgsp1_rep	five_prime_UTR	12379673	12380340	.	-	.	Parent=Os12t0408800-03
Chr12	irgsp1_rep	five_prime_UTR	12379112	12379552	.	-	.	Parent=Os12t0408800-03
Chr12	irgsp1_rep	CDS	12378929	12379111	.	-	0	Parent=Os12t0408800-03
Chr12	irgsp1_rep	three_prime_UTR	12378739	12378928	.	-	.	Parent=Os12t0408800-03
Chr12	irgsp1_rep	mRNA	12392759	12396626	.	-	.	ID=Os12t0409000-01;Name=Os12t0409000-01;Locus_id=Os12g0409000;Oryzabase Gene Symbol Synonym(s)=OsSHM3%2C SHM3%2C OsSHMT3%2C SHMT3%2C OsSHTM5%2C SHTM5;Oryzabase Gene Name Synonym(s)=serine hydroxymethyltransferase 3%2C serine hydroxymethyltransferase-5;Note=Similar to Serine hydroxymethyltransferase.;Transcript_evidence=AK101088 (DDBJ%2C Best hit);ORF_evidence=A2YCP9 (UniProt);GO=Biological Process: glycine metabolic process (GO:0006544),Biological Process: L-serine metabolic process (GO:0006563),Molecular Function: catalytic activity (GO:0003824),Molecular Function: glycine hydroxymethyltransferase activity (GO:0004372),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Serine hydroxymethyltransferase (IPR001085),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424),Serine hydroxymethyltransferase%2C pyridoxal phosphate binding site (IPR019798);NIAS_FLcDNA=J033024L02;Oryzabase=19252;TENOR=Os12t0409000-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	12396531	12396626	.	-	.	Parent=Os12t0409000-01
Chr12	irgsp1_rep	CDS	12395673	12396530	.	-	0	Parent=Os12t0409000-01
Chr12	irgsp1_rep	CDS	12394296	12394686	.	-	0	Parent=Os12t0409000-01
Chr12	irgsp1_rep	CDS	12394113	12394214	.	-	2	Parent=Os12t0409000-01
Chr12	irgsp1_rep	CDS	12393009	12393253	.	-	2	Parent=Os12t0409000-01
Chr12	irgsp1_rep	three_prime_UTR	12392759	12393008	.	-	.	Parent=Os12t0409000-01
Chr12	irgsp1_rep	mRNA	12428805	12432766	.	+	.	ID=Os12t0409600-01;Name=Os12t0409600-01;Locus_id=Os12g0409600;Note=Conserved hypothetical protein.;Transcript_evidence=AK105494 (DDBJ%2C Best hit);ORF_evidence=Q2QT26 (UniProt);NIAS_FLcDNA=001-127-C05;TENOR=Os12t0409600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	12428805	12428805	.	+	.	Parent=Os12t0409600-01
Chr12	irgsp1_rep	CDS	12428806	12429249	.	+	0	Parent=Os12t0409600-01
Chr12	irgsp1_rep	three_prime_UTR	12429250	12429280	.	+	.	Parent=Os12t0409600-01
Chr12	irgsp1_rep	three_prime_UTR	12429379	12429458	.	+	.	Parent=Os12t0409600-01
Chr12	irgsp1_rep	three_prime_UTR	12431244	12431382	.	+	.	Parent=Os12t0409600-01
Chr12	irgsp1_rep	three_prime_UTR	12431472	12432766	.	+	.	Parent=Os12t0409600-01
Chr12	irgsp1_rep	mRNA	12433463	12439186	.	-	.	ID=Os12t0409700-00;Name=Os12t0409700-00;Locus_id=Os12g0409700;CGSNL Gene Symbol=ABCG29;CGSNL Gene Name=ABC TRANSPORTER G FAMILY MEMBER 29;Oryzabase Gene Symbol Synonym(s)=OsABCG29;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 29;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QT24 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887);InterPro=ABC transporter-like (IPR003439),ABC-2 type transporter (IPR013525);Oryzabase=12006;TENOR=Os12t0409700-00;KEGG=Os12t0409700-00
Chr12	irgsp1_rep	CDS	12438752	12439186	.	-	0	Parent=Os12t0409700-00
Chr12	irgsp1_rep	CDS	12436516	12436602	.	-	0	Parent=Os12t0409700-00
Chr12	irgsp1_rep	CDS	12436314	12436442	.	-	0	Parent=Os12t0409700-00
Chr12	irgsp1_rep	CDS	12433463	12434089	.	-	0	Parent=Os12t0409700-00
Chr12	irgsp1_rep	mRNA	12439519	12442244	.	+	.	ID=Os12t0409800-01;Name=Os12t0409800-01;Locus_id=Os12g0409800;Note=Conserved hypothetical protein.;Transcript_evidence=AK067209 (DDBJ%2C Best hit);ORF_evidence=Q5QMZ7 (UniProt);NIAS_FLcDNA=J013096K10;TENOR=Os12t0409800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	12439519	12440632	.	+	.	Parent=Os12t0409800-01
Chr12	irgsp1_rep	CDS	12440633	12440866	.	+	0	Parent=Os12t0409800-01
Chr12	irgsp1_rep	three_prime_UTR	12440867	12442244	.	+	.	Parent=Os12t0409800-01
Chr12	irgsp1_rep	mRNA	12441885	12443554	.	-	.	ID=Os12t0409900-01;Name=Os12t0409900-01;Locus_id=Os12g0409900;Note=Hypothetical conserved gene.;Transcript_evidence=AK241106 (DDBJ%2C Best hit);ORF_evidence=XP_002300189.1 (RefSeq);NIAS_FLcDNA=J065079K01;TENOR=Os12t0409900-01;KEGG=Os12t0409900-01
Chr12	irgsp1_rep	five_prime_UTR	12443536	12443554	.	-	.	Parent=Os12t0409900-01
Chr12	irgsp1_rep	CDS	12443175	12443535	.	-	0	Parent=Os12t0409900-01
Chr12	irgsp1_rep	CDS	12441964	12442067	.	-	2	Parent=Os12t0409900-01
Chr12	irgsp1_rep	three_prime_UTR	12441885	12441963	.	-	.	Parent=Os12t0409900-01
Chr12	irgsp1_rep	mRNA	12446119	12446734	.	-	.	ID=Os12t0410000-00;Name=Os12t0410000-00;Locus_id=Os12g0410000;Note=Conserved hypothetical protein.;Transcript_evidence=CT835588 (DDBJ%2C Best hit);ORF_evidence=Q69Y33 (UniProt);TENOR=Os12t0410000-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	12446734	12446734	.	-	.	Parent=Os12t0410000-00
Chr12	irgsp1_rep	CDS	12446404	12446733	.	-	0	Parent=Os12t0410000-00
Chr12	irgsp1_rep	three_prime_UTR	12446119	12446403	.	-	.	Parent=Os12t0410000-00
Chr12	irgsp1_rep	mRNA	12449549	12450779	.	-	.	ID=Os12t0410050-01;Name=Os12t0410050-01;Locus_id=Os12g0410050;Note=Hypothetical conserved gene.;Transcript_evidence=AK242018 (DDBJ%2C Best hit);ORF_evidence=B9GCU0 (UniProt);NIAS_FLcDNA=J075111J09;TENOR=Os12t0410050-01;KEGG=Os12t0410050-01
Chr12	irgsp1_rep	five_prime_UTR	12450668	12450779	.	-	.	Parent=Os12t0410050-01
Chr12	irgsp1_rep	CDS	12450464	12450667	.	-	0	Parent=Os12t0410050-01
Chr12	irgsp1_rep	CDS	12449931	12449954	.	-	0	Parent=Os12t0410050-01
Chr12	irgsp1_rep	three_prime_UTR	12449549	12449930	.	-	.	Parent=Os12t0410050-01
Chr12	irgsp1_rep	mRNA	12460809	12465044	.	-	.	ID=Os12t0410150-01;Name=Os12t0410150-01;Locus_id=Os12g0410150;Note=Hypothetical gene.;Transcript_evidence=AK241183 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065119L07;TENOR=Os12t0410150-01;KEGG=Os12t0410150-01
Chr12	irgsp1_rep	five_prime_UTR	12465043	12465044	.	-	.	Parent=Os12t0410150-01
Chr12	irgsp1_rep	CDS	12464803	12465042	.	-	0	Parent=Os12t0410150-01
Chr12	irgsp1_rep	three_prime_UTR	12464647	12464802	.	-	.	Parent=Os12t0410150-01
Chr12	irgsp1_rep	three_prime_UTR	12462686	12462829	.	-	.	Parent=Os12t0410150-01
Chr12	irgsp1_rep	three_prime_UTR	12461354	12461439	.	-	.	Parent=Os12t0410150-01
Chr12	irgsp1_rep	three_prime_UTR	12461202	12461250	.	-	.	Parent=Os12t0410150-01
Chr12	irgsp1_rep	three_prime_UTR	12460809	12461119	.	-	.	Parent=Os12t0410150-01
Chr12	irgsp1_rep	mRNA	12472015	12472828	.	-	.	ID=Os12t0410200-01;Name=Os12t0410200-01;Locus_id=Os12g0410200;Note=Conserved hypothetical protein.;Transcript_evidence=AK068287 (DDBJ%2C Best hit);ORF_evidence=NP_001175746.1 (RefSeq);NIAS_FLcDNA=J013149F18;TENOR=Os12t0410200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	12472683	12472828	.	-	.	Parent=Os12t0410200-01
Chr12	irgsp1_rep	CDS	12472212	12472682	.	-	0	Parent=Os12t0410200-01
Chr12	irgsp1_rep	three_prime_UTR	12472015	12472211	.	-	.	Parent=Os12t0410200-01
Chr12	irgsp1_rep	mRNA	12568930	12587004	.	-	.	ID=Os12t0411700-01;Name=Os12t0411700-01;Locus_id=Os12g0411700;CGSNL Gene Symbol=ABCG30;CGSNL Gene Name=ABC TRANSPORTER G FAMILY MEMBER 30;Oryzabase Gene Symbol Synonym(s)=OsABCG30;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 30;Note=ABC transporter-like domain containing protein.;Transcript_evidence=AK067639 (DDBJ%2C Best hit);ORF_evidence=Q2QT24 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC-2 type transporter (IPR013525),ABC transporter%2C conserved site (IPR017871);NIAS_FLcDNA=J013108J11;Oryzabase=12007;Expression=AK067639;TENOR=Os12t0411700-01;KEGG=Os12t0411700-01
Chr12	irgsp1_rep	five_prime_UTR	12586937	12587004	.	-	.	Parent=Os12t0411700-01
Chr12	irgsp1_rep	CDS	12586465	12586936	.	-	0	Parent=Os12t0411700-01
Chr12	irgsp1_rep	CDS	12574544	12574623	.	-	2	Parent=Os12t0411700-01
Chr12	irgsp1_rep	CDS	12573670	12574134	.	-	0	Parent=Os12t0411700-01
Chr12	irgsp1_rep	CDS	12573155	12573241	.	-	0	Parent=Os12t0411700-01
Chr12	irgsp1_rep	CDS	12572922	12573047	.	-	0	Parent=Os12t0411700-01
Chr12	irgsp1_rep	CDS	12570661	12570852	.	-	0	Parent=Os12t0411700-01
Chr12	irgsp1_rep	CDS	12570468	12570554	.	-	0	Parent=Os12t0411700-01
Chr12	irgsp1_rep	CDS	12569362	12569994	.	-	0	Parent=Os12t0411700-01
Chr12	irgsp1_rep	three_prime_UTR	12568930	12569361	.	-	.	Parent=Os12t0411700-01
Chr12	irgsp1_rep	mRNA	12569161	12572993	.	-	.	ID=Os12t0411700-02;Name=Os12t0411700-02;Locus_id=Os12g0411700;CGSNL Gene Symbol=ABCG30;CGSNL Gene Name=ABC TRANSPORTER G FAMILY MEMBER 30;Oryzabase Gene Symbol Synonym(s)=OsABCG30;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 30;Note=Similar to white-brown-complex ABC transporter family.;Transcript_evidence=AK104709 (DDBJ%2C Best hit);ORF_evidence=Q2QT24 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=ABC-2 type transporter (IPR013525);NIAS_FLcDNA=001-037-E10;Oryzabase=12007;Expression=AK104709;TENOR=Os12t0411700-02;KEGG=Os12t0411700-02
Chr12	irgsp1_rep	CDS	12572922	12572993	.	-	0	Parent=Os12t0411700-02
Chr12	irgsp1_rep	CDS	12570661	12570852	.	-	0	Parent=Os12t0411700-02
Chr12	irgsp1_rep	CDS	12570468	12570554	.	-	0	Parent=Os12t0411700-02
Chr12	irgsp1_rep	CDS	12569362	12569994	.	-	0	Parent=Os12t0411700-02
Chr12	irgsp1_rep	three_prime_UTR	12569161	12569361	.	-	.	Parent=Os12t0411700-02
Chr12	irgsp1_rep	mRNA	12569408	12574135	.	+	.	ID=Os12t0412050-00;Name=Os12t0412050-00;Locus_id=Os12g0412050;Note=Hypothetical protein.;Transcript_evidence=tplb0024i20 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0412050-00
Chr12	irgsp1_rep	five_prime_UTR	12569408	12569961	.	+	.	Parent=Os12t0412050-00
Chr12	irgsp1_rep	five_prime_UTR	12570435	12570513	.	+	.	Parent=Os12t0412050-00
Chr12	irgsp1_rep	five_prime_UTR	12570618	12570955	.	+	.	Parent=Os12t0412050-00
Chr12	irgsp1_rep	five_prime_UTR	12573092	12573233	.	+	.	Parent=Os12t0412050-00
Chr12	irgsp1_rep	five_prime_UTR	12573656	12573732	.	+	.	Parent=Os12t0412050-00
Chr12	irgsp1_rep	CDS	12573733	12574035	.	+	0	Parent=Os12t0412050-00
Chr12	irgsp1_rep	three_prime_UTR	12574036	12574135	.	+	.	Parent=Os12t0412050-00
Chr12	irgsp1_rep	mRNA	12581812	12582469	.	+	.	ID=Os12t0412400-01;Name=Os12t0412400-01;Locus_id=Os12g0412400;Note=Hypothetical gene.;Transcript_evidence=AK240964 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065046B17;TENOR=Os12t0412400-01;KEGG=Os12t0412400-01
Chr12	irgsp1_rep	five_prime_UTR	12581812	12581813	.	+	.	Parent=Os12t0412400-01
Chr12	irgsp1_rep	CDS	12581814	12582170	.	+	0	Parent=Os12t0412400-01
Chr12	irgsp1_rep	three_prime_UTR	12582171	12582469	.	+	.	Parent=Os12t0412400-01
Chr12	irgsp1_rep	mRNA	12584464	12585978	.	+	.	ID=Os12t0412800-01;Name=Os12t0412800-01;Locus_id=Os12g0412800;Note=Non-protein coding transcript.;Transcript_evidence=AK240688 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J043005B11;TENOR=Os12t0412800-01
Chr12	irgsp1_rep	exon	12584464	12585978	.	+	.	Parent=Os12t0412800-01
Chr12	irgsp1_rep	mRNA	12762896	12765776	.	-	.	ID=Os12t0414500-01;Name=Os12t0414500-01;Locus_id=Os12g0414500;Note=Aminoacyl-tRNA synthetase%2C class II (D%2C K and N)-like domain containing protein.;Transcript_evidence=AK110880 (DDBJ%2C Best hit);ORF_evidence=A2ZJT7 (UniProt);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: asparaginyl-tRNA aminoacylation (GO:0006421),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: asparagine-tRNA ligase activity (GO:0004816),Molecular Function: ATP binding (GO:0005524);InterPro=Aminoacyl-tRNA synthetase%2C class II (D/K/N) (IPR004364),Asparaginyl-tRNA synthetase%2C class IIb (IPR004522),Aminoacyl-tRNA synthetase%2C class II (D/K/N)-like (IPR018150);NIAS_FLcDNA=002-172-G08;Expression=AK110880;TENOR=Os12t0414500-01;KEGG=Os12t0414500-01 (EC:6.1.1.22)
Chr12	irgsp1_rep	five_prime_UTR	12765709	12765776	.	-	.	Parent=Os12t0414500-01
Chr12	irgsp1_rep	CDS	12765274	12765708	.	-	0	Parent=Os12t0414500-01
Chr12	irgsp1_rep	CDS	12764934	12765173	.	-	0	Parent=Os12t0414500-01
Chr12	irgsp1_rep	CDS	12764250	12764795	.	-	0	Parent=Os12t0414500-01
Chr12	irgsp1_rep	CDS	12763994	12764182	.	-	0	Parent=Os12t0414500-01
Chr12	irgsp1_rep	CDS	12763836	12763900	.	-	0	Parent=Os12t0414500-01
Chr12	irgsp1_rep	CDS	12763619	12763748	.	-	1	Parent=Os12t0414500-01
Chr12	irgsp1_rep	CDS	12763458	12763516	.	-	0	Parent=Os12t0414500-01
Chr12	irgsp1_rep	CDS	12763048	12763231	.	-	1	Parent=Os12t0414500-01
Chr12	irgsp1_rep	three_prime_UTR	12762896	12763047	.	-	.	Parent=Os12t0414500-01
Chr12	irgsp1_rep	mRNA	12780442	12784156	.	+	.	ID=Os12t0414900-00;Name=Os12t0414900-00;Locus_id=Os12g0414900;Note=Similar to Endonuclease/Exonuclease/phosphatase family protein%2C expressed.;Transcript_evidence=BT087562 (DDBJ);ORF_evidence=Q2QSX3 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RanBP2-type (IPR001876),Endonuclease/exonuclease/phosphatase (IPR005135);TENOR=Os12t0414900-00;KEGG=Os12t0414900-00
Chr12	irgsp1_rep	CDS	12780442	12781093	.	+	0	Parent=Os12t0414900-00
Chr12	irgsp1_rep	CDS	12782284	12782429	.	+	2	Parent=Os12t0414900-00
Chr12	irgsp1_rep	CDS	12782501	12782611	.	+	0	Parent=Os12t0414900-00
Chr12	irgsp1_rep	CDS	12783530	12784117	.	+	0	Parent=Os12t0414900-00
Chr12	irgsp1_rep	three_prime_UTR	12784118	12784156	.	+	.	Parent=Os12t0414900-00
Chr12	irgsp1_rep	mRNA	12792438	12793289	.	-	.	ID=Os12t0415400-00;Name=Os12t0415400-00;Locus_id=Os12g0415400;Note=Similar to Histone H3.;Transcript_evidence=AK373585 (DDBJ);ORF_evidence=B9FRM3 (UniProt);TENOR=Os12t0415400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	12792627	12793289	.	-	0	Parent=Os12t0415400-00
Chr12	irgsp1_rep	three_prime_UTR	12792438	12792626	.	-	.	Parent=Os12t0415400-00
Chr12	irgsp1_rep	mRNA	12807810	12808492	.	-	.	ID=Os12t0415800-00;Name=Os12t0415800-00;Locus_id=Os12g0415800;Note=Similar to Histone H3.;Transcript_evidence=FP099735 (DDBJ);ORF_evidence=A2ZJV2 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H3 (IPR000164),Histone core (IPR007125),Histone-fold (IPR009072);TENOR=Os12t0415800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	12808422	12808492	.	-	.	Parent=Os12t0415800-00
Chr12	irgsp1_rep	CDS	12808011	12808421	.	-	0	Parent=Os12t0415800-00
Chr12	irgsp1_rep	three_prime_UTR	12807810	12808010	.	-	.	Parent=Os12t0415800-00
Chr12	irgsp1_rep	mRNA	12808015	12808450	.	+	.	ID=Os12t0416050-00;Name=Os12t0416050-00;Locus_id=Os12g0416050;Note=Non-protein coding transcript.;Transcript_evidence=BT016934 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0416050-00
Chr12	irgsp1_rep	exon	12808015	12808450	.	+	.	Parent=Os12t0416050-00
Chr12	irgsp1_rep	mRNA	12833827	12839245	.	+	.	ID=Os12t0416300-01;Name=Os12t0416300-01;Locus_id=Os12g0416300;Note=Conserved hypothetical protein.;Transcript_evidence=AK120084 (DDBJ%2C Best hit);ORF_evidence=Q5JJV5 (UniProt);NIAS_FLcDNA=J013020D10;TENOR=Os12t0416300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	12833827	12834560	.	+	.	Parent=Os12t0416300-01
Chr12	irgsp1_rep	five_prime_UTR	12834636	12834924	.	+	.	Parent=Os12t0416300-01
Chr12	irgsp1_rep	five_prime_UTR	12835007	12838713	.	+	.	Parent=Os12t0416300-01
Chr12	irgsp1_rep	CDS	12838714	12838833	.	+	0	Parent=Os12t0416300-01
Chr12	irgsp1_rep	three_prime_UTR	12838834	12839245	.	+	.	Parent=Os12t0416300-01
Chr12	irgsp1_rep	mRNA	12833846	12835464	.	+	.	ID=Os12t0416300-02;Name=Os12t0416300-02;Locus_id=Os12g0416300;Note=Hypothetical gene.;Transcript_evidence=AK106345 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-101-H03;Expression=AK106345;TENOR=Os12t0416300-02;KEGG=Os12t0416300-02
Chr12	irgsp1_rep	five_prime_UTR	12833846	12833847	.	+	.	Parent=Os12t0416300-02
Chr12	irgsp1_rep	CDS	12833848	12834150	.	+	0	Parent=Os12t0416300-02
Chr12	irgsp1_rep	three_prime_UTR	12834151	12834566	.	+	.	Parent=Os12t0416300-02
Chr12	irgsp1_rep	three_prime_UTR	12834636	12834924	.	+	.	Parent=Os12t0416300-02
Chr12	irgsp1_rep	three_prime_UTR	12835007	12835464	.	+	.	Parent=Os12t0416300-02
Chr12	irgsp1_rep	mRNA	12833847	12838735	.	+	.	ID=Os12t0416300-03;Name=Os12t0416300-03;Locus_id=Os12g0416300;Note=Hypothetical gene.;Transcript_evidence=AK066214 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013056C13;Expression=AK066214;TENOR=Os12t0416300-03;KEGG=Os12t0416300-03
Chr12	irgsp1_rep	five_prime_UTR	12833847	12833847	.	+	.	Parent=Os12t0416300-03
Chr12	irgsp1_rep	CDS	12833848	12834150	.	+	0	Parent=Os12t0416300-03
Chr12	irgsp1_rep	three_prime_UTR	12834151	12834566	.	+	.	Parent=Os12t0416300-03
Chr12	irgsp1_rep	three_prime_UTR	12834636	12834924	.	+	.	Parent=Os12t0416300-03
Chr12	irgsp1_rep	three_prime_UTR	12835007	12836881	.	+	.	Parent=Os12t0416300-03
Chr12	irgsp1_rep	three_prime_UTR	12837239	12837529	.	+	.	Parent=Os12t0416300-03
Chr12	irgsp1_rep	three_prime_UTR	12838453	12838735	.	+	.	Parent=Os12t0416300-03
Chr12	irgsp1_rep	mRNA	12845194	12851745	.	+	.	ID=Os12t0416500-01;Name=Os12t0416500-01;Locus_id=Os12g0416500;Note=GCN5-like 1 family protein.;Transcript_evidence=AK067455 (DDBJ%2C Best hit);ORF_evidence=NP_180592.1 (RefSeq);InterPro=GCN5-like 1 (IPR009395);NIAS_FLcDNA=J013105I07;Expression=AK067455;TENOR=Os12t0416500-01;KEGG=Os12t0416500-01
Chr12	irgsp1_rep	five_prime_UTR	12845194	12845235	.	+	.	Parent=Os12t0416500-01
Chr12	irgsp1_rep	five_prime_UTR	12845361	12845424	.	+	.	Parent=Os12t0416500-01
Chr12	irgsp1_rep	five_prime_UTR	12845977	12846065	.	+	.	Parent=Os12t0416500-01
Chr12	irgsp1_rep	CDS	12846066	12846075	.	+	0	Parent=Os12t0416500-01
Chr12	irgsp1_rep	CDS	12846161	12846238	.	+	2	Parent=Os12t0416500-01
Chr12	irgsp1_rep	CDS	12846349	12846552	.	+	2	Parent=Os12t0416500-01
Chr12	irgsp1_rep	CDS	12846836	12846852	.	+	2	Parent=Os12t0416500-01
Chr12	irgsp1_rep	three_prime_UTR	12846853	12847678	.	+	.	Parent=Os12t0416500-01
Chr12	irgsp1_rep	three_prime_UTR	12847809	12847970	.	+	.	Parent=Os12t0416500-01
Chr12	irgsp1_rep	three_prime_UTR	12848035	12848507	.	+	.	Parent=Os12t0416500-01
Chr12	irgsp1_rep	three_prime_UTR	12849732	12849804	.	+	.	Parent=Os12t0416500-01
Chr12	irgsp1_rep	three_prime_UTR	12851358	12851745	.	+	.	Parent=Os12t0416500-01
Chr12	irgsp1_rep	mRNA	12864424	12866177	.	+	.	ID=Os12t0416800-01;Name=Os12t0416800-01;Locus_id=Os12g0416800;Note=Conserved hypothetical protein.;Transcript_evidence=AK101226 (DDBJ%2C Best hit);ORF_evidence=B8BPB2 (UniProt);NIAS_FLcDNA=J033031F08;Expression=AK101226;TENOR=Os12t0416800-01;KEGG=Os12t0416800-01
Chr12	irgsp1_rep	five_prime_UTR	12864424	12864534	.	+	.	Parent=Os12t0416800-01
Chr12	irgsp1_rep	CDS	12864535	12864540	.	+	0	Parent=Os12t0416800-01
Chr12	irgsp1_rep	CDS	12864725	12864919	.	+	0	Parent=Os12t0416800-01
Chr12	irgsp1_rep	CDS	12865270	12865446	.	+	0	Parent=Os12t0416800-01
Chr12	irgsp1_rep	CDS	12865623	12865679	.	+	0	Parent=Os12t0416800-01
Chr12	irgsp1_rep	three_prime_UTR	12865680	12866177	.	+	.	Parent=Os12t0416800-01
Chr12	irgsp1_rep	mRNA	12868201	12870306	.	+	.	ID=Os12t0416900-01;Name=Os12t0416900-01;Locus_id=Os12g0416900;Note=Conserved hypothetical protein.;Transcript_evidence=AK067230 (DDBJ%2C Best hit);ORF_evidence=Q2QSV4 (UniProt);NIAS_FLcDNA=J013096B09;TENOR=Os12t0416900-01
Chr12	irgsp1_rep	five_prime_UTR	12868201	12868562	.	+	.	Parent=Os12t0416900-01
Chr12	irgsp1_rep	five_prime_UTR	12869203	12869280	.	+	.	Parent=Os12t0416900-01
Chr12	irgsp1_rep	five_prime_UTR	12869395	12869499	.	+	.	Parent=Os12t0416900-01
Chr12	irgsp1_rep	five_prime_UTR	12869792	12869800	.	+	.	Parent=Os12t0416900-01
Chr12	irgsp1_rep	CDS	12869801	12869829	.	+	0	Parent=Os12t0416900-01
Chr12	irgsp1_rep	CDS	12869920	12870306	.	+	1	Parent=Os12t0416900-01
Chr12	irgsp1_rep	mRNA	12873432	12876080	.	+	.	ID=Os12t0417000-01;Name=Os12t0417000-01;Locus_id=Os12g0417000;Note=Transposase%2C Ptta/En/Spm%2C plant domain containing protein.;Transcript_evidence=AK064576 (DDBJ%2C Best hit);ORF_evidence=Q8H801 (UniProt);InterPro=Transposase%2C Ptta/En/Spm%2C plant (IPR004252),Transposase%2C Tnp1/En/Spm-like (IPR004264);NIAS_FLcDNA=002-112-E07;Expression=AK064576;TENOR=Os12t0417000-01;KEGG=Os12t0417000-01
Chr12	irgsp1_rep	five_prime_UTR	12873432	12873445	.	+	.	Parent=Os12t0417000-01
Chr12	irgsp1_rep	CDS	12873446	12873470	.	+	0	Parent=Os12t0417000-01
Chr12	irgsp1_rep	CDS	12873617	12873825	.	+	2	Parent=Os12t0417000-01
Chr12	irgsp1_rep	CDS	12873904	12874048	.	+	0	Parent=Os12t0417000-01
Chr12	irgsp1_rep	CDS	12874136	12874404	.	+	2	Parent=Os12t0417000-01
Chr12	irgsp1_rep	CDS	12874481	12874684	.	+	0	Parent=Os12t0417000-01
Chr12	irgsp1_rep	CDS	12874759	12874851	.	+	0	Parent=Os12t0417000-01
Chr12	irgsp1_rep	CDS	12874928	12875026	.	+	0	Parent=Os12t0417000-01
Chr12	irgsp1_rep	CDS	12875100	12875456	.	+	0	Parent=Os12t0417000-01
Chr12	irgsp1_rep	CDS	12875568	12875786	.	+	0	Parent=Os12t0417000-01
Chr12	irgsp1_rep	CDS	12875886	12876080	.	+	0	Parent=Os12t0417000-01
Chr12	irgsp1_rep	mRNA	12892992	12893423	.	+	.	ID=Os12t0417100-01;Name=Os12t0417100-01;Locus_id=Os12g0417100;Note=Hypothetical conserved gene.;Transcript_evidence=AK110761 (DDBJ%2C Best hit);ORF_evidence=B9GCU6 (UniProt);NIAS_FLcDNA=002-170-H07;Expression=AK110761;TENOR=Os12t0417100-01;KEGG=Os12t0417100-01
Chr12	irgsp1_rep	five_prime_UTR	12892992	12892996	.	+	.	Parent=Os12t0417100-01
Chr12	irgsp1_rep	CDS	12892997	12893149	.	+	0	Parent=Os12t0417100-01
Chr12	irgsp1_rep	three_prime_UTR	12893150	12893423	.	+	.	Parent=Os12t0417100-01
Chr12	irgsp1_rep	mRNA	12911508	12912287	.	+	.	ID=Os12t0417300-00;Name=Os12t0417300-00;Locus_id=Os12g0417300;Note=Conserved hypothetical protein.;Transcript_evidence=BT060787 (DDBJ);ORF_evidence=Q2QSU7 (UniProt);TENOR=Os12t0417300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	12911508	12911699	.	+	0	Parent=Os12t0417300-00
Chr12	irgsp1_rep	CDS	12911754	12912128	.	+	0	Parent=Os12t0417300-00
Chr12	irgsp1_rep	three_prime_UTR	12912129	12912287	.	+	.	Parent=Os12t0417300-00
Chr12	irgsp1_rep	mRNA	12916099	12916683	.	+	.	ID=Os12t0417450-00;Name=Os12t0417450-00;Locus_id=Os12g0417450;Note=Conserved hypothetical protein.;Transcript_evidence=EU971665 (DDBJ);ORF_evidence=Q6ZH79 (UniProt);TENOR=Os12t0417450-00
Chr12	irgsp1_rep	CDS	12916099	12916683	.	+	0	Parent=Os12t0417450-00
Chr12	irgsp1_rep	mRNA	12940764	12942258	.	+	.	ID=Os12t0417600-01;Name=Os12t0417600-01;Locus_id=Os12g0417600;Note=Non-protein coding transcript.;Transcript_evidence=AK121467 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023146M09;TENOR=Os12t0417600-01
Chr12	irgsp1_rep	exon	12940764	12940996	.	+	.	Parent=Os12t0417600-01
Chr12	irgsp1_rep	exon	12942017	12942258	.	+	.	Parent=Os12t0417600-01
Chr12	irgsp1_rep	mRNA	12962679	12963317	.	+	.	ID=Os12t0418200-00;Name=Os12t0418200-00;Locus_id=Os12g0418200;Note=Conserved hypothetical protein.;Transcript_evidence=BT060787 (DDBJ);ORF_evidence=Q2QSU2 (UniProt);TENOR=Os12t0418200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	12962679	12963218	.	+	0	Parent=Os12t0418200-00
Chr12	irgsp1_rep	three_prime_UTR	12963219	12963317	.	+	.	Parent=Os12t0418200-00
Chr12	irgsp1_rep	mRNA	12986905	12989740	.	+	.	ID=Os12t0418600-01;Name=Os12t0418600-01;Locus_id=Os12g0418600;Note=Hypothetical conserved gene.;Transcript_evidence=AK287894 (DDBJ%2C Best hit);ORF_evidence=Q2QST8 (UniProt);NIAS_FLcDNA=J065209M12;TENOR=Os12t0418600-01;KEGG=Os12t0418600-01
Chr12	irgsp1_rep	five_prime_UTR	12986905	12987188	.	+	.	Parent=Os12t0418600-01
Chr12	irgsp1_rep	CDS	12987189	12987333	.	+	0	Parent=Os12t0418600-01
Chr12	irgsp1_rep	CDS	12988478	12988566	.	+	2	Parent=Os12t0418600-01
Chr12	irgsp1_rep	CDS	12989475	12989579	.	+	0	Parent=Os12t0418600-01
Chr12	irgsp1_rep	three_prime_UTR	12989580	12989740	.	+	.	Parent=Os12t0418600-01
Chr12	irgsp1_rep	mRNA	13021779	13025304	.	-	.	ID=Os12t0418900-01;Name=Os12t0418900-01;Locus_id=Os12g0418900;Note=Hypothetical conserved gene.;Transcript_evidence=AK064683 (DDBJ%2C Best hit);ORF_evidence=B9GCU9 (UniProt);NIAS_FLcDNA=002-116-A12;Expression=AK064683;TENOR=Os12t0418900-01;KEGG=Os12t0418900-01
Chr12	irgsp1_rep	five_prime_UTR	13024915	13025304	.	-	.	Parent=Os12t0418900-01
Chr12	irgsp1_rep	five_prime_UTR	13024630	13024771	.	-	.	Parent=Os12t0418900-01
Chr12	irgsp1_rep	CDS	13024619	13024629	.	-	0	Parent=Os12t0418900-01
Chr12	irgsp1_rep	CDS	13023702	13023754	.	-	1	Parent=Os12t0418900-01
Chr12	irgsp1_rep	CDS	13023496	13023616	.	-	2	Parent=Os12t0418900-01
Chr12	irgsp1_rep	CDS	13021985	13022039	.	-	1	Parent=Os12t0418900-01
Chr12	irgsp1_rep	three_prime_UTR	13021779	13021984	.	-	.	Parent=Os12t0418900-01
Chr12	irgsp1_rep	mRNA	13025972	13028599	.	+	.	ID=Os12t0419000-00;Name=Os12t0419000-00;Locus_id=Os12g0419000;Note=Conserved hypothetical protein.;Transcript_evidence=EU956004 (DDBJ);ORF_evidence=Q2QST1 (UniProt);TENOR=Os12t0419000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	13025972	13026222	.	+	0	Parent=Os12t0419000-00
Chr12	irgsp1_rep	CDS	13028274	13028283	.	+	1	Parent=Os12t0419000-00
Chr12	irgsp1_rep	three_prime_UTR	13028284	13028599	.	+	.	Parent=Os12t0419000-00
Chr12	irgsp1_rep	mRNA	13055949	13060893	.	-	.	ID=Os12t0419700-01;Name=Os12t0419700-01;Locus_id=Os12g0419700;Note=Hypothetical gene.;Transcript_evidence=AK071980 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013087B13;Expression=AK071980;TENOR=Os12t0419700-01;KEGG=Os12t0419700-01
Chr12	irgsp1_rep	five_prime_UTR	13060893	13060893	.	-	.	Parent=Os12t0419700-01
Chr12	irgsp1_rep	CDS	13060653	13060892	.	-	0	Parent=Os12t0419700-01
Chr12	irgsp1_rep	three_prime_UTR	13060584	13060652	.	-	.	Parent=Os12t0419700-01
Chr12	irgsp1_rep	three_prime_UTR	13060386	13060488	.	-	.	Parent=Os12t0419700-01
Chr12	irgsp1_rep	three_prime_UTR	13059159	13059334	.	-	.	Parent=Os12t0419700-01
Chr12	irgsp1_rep	three_prime_UTR	13058483	13058670	.	-	.	Parent=Os12t0419700-01
Chr12	irgsp1_rep	three_prime_UTR	13058295	13058348	.	-	.	Parent=Os12t0419700-01
Chr12	irgsp1_rep	three_prime_UTR	13057168	13058002	.	-	.	Parent=Os12t0419700-01
Chr12	irgsp1_rep	three_prime_UTR	13055949	13056264	.	-	.	Parent=Os12t0419700-01
Chr12	irgsp1_rep	mRNA	13095637	13096720	.	-	.	ID=Os12t0420000-00;Name=Os12t0420000-00;Locus_id=Os12g0420000;Oryzabase Gene Symbol Synonym(s)=OsSTA280;Note=Similar to OSIGBa0130B08.3 protein.;Transcript_evidence=AK251270 (DDBJ);ORF_evidence=Q01IU7 (UniProt);InterPro=HAD-like domain (IPR023214);Oryzabase=19536;TENOR=Os12t0420000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	13096659	13096720	.	-	.	Parent=Os12t0420000-00
Chr12	irgsp1_rep	CDS	13096487	13096658	.	-	0	Parent=Os12t0420000-00
Chr12	irgsp1_rep	CDS	13096333	13096399	.	-	2	Parent=Os12t0420000-00
Chr12	irgsp1_rep	CDS	13096215	13096236	.	-	1	Parent=Os12t0420000-00
Chr12	irgsp1_rep	three_prime_UTR	13096144	13096214	.	-	.	Parent=Os12t0420000-00
Chr12	irgsp1_rep	three_prime_UTR	13095994	13096065	.	-	.	Parent=Os12t0420000-00
Chr12	irgsp1_rep	three_prime_UTR	13095778	13095849	.	-	.	Parent=Os12t0420000-00
Chr12	irgsp1_rep	three_prime_UTR	13095637	13095698	.	-	.	Parent=Os12t0420000-00
Chr12	irgsp1_rep	mRNA	13099651	13102786	.	+	.	ID=Os12t0420100-01;Name=Os12t0420100-01;Locus_id=Os12g0420100;CGSNL Gene Symbol=BGLU38;CGSNL Gene Name=BETA-GLUCOSIDASE 38;Oryzabase Gene Symbol Synonym(s)=Os12bglu38%2C Os12Bglu38;Oryzabase Gene Name Synonym(s)=beta-glucosidase 38;Note=Similar to Beta-glucosidase.;Transcript_evidence=AK071058 (DDBJ%2C Best hit);ORF_evidence=Q2QSR8 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: cation binding (GO:0043169);InterPro=Glycoside hydrolase%2C family 1 (IPR001360),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=J023077M13;Oryzabase=12111;Expression=AK071058;TENOR=Os12t0420100-01;KEGG=Os12t0420100-01
Chr12	irgsp1_rep	five_prime_UTR	13099651	13099679	.	+	.	Parent=Os12t0420100-01
Chr12	irgsp1_rep	CDS	13099680	13099881	.	+	0	Parent=Os12t0420100-01
Chr12	irgsp1_rep	CDS	13100149	13100207	.	+	2	Parent=Os12t0420100-01
Chr12	irgsp1_rep	CDS	13100316	13100391	.	+	0	Parent=Os12t0420100-01
Chr12	irgsp1_rep	CDS	13100480	13100551	.	+	2	Parent=Os12t0420100-01
Chr12	irgsp1_rep	CDS	13100647	13100734	.	+	2	Parent=Os12t0420100-01
Chr12	irgsp1_rep	CDS	13101043	13101283	.	+	1	Parent=Os12t0420100-01
Chr12	irgsp1_rep	CDS	13101380	13101498	.	+	0	Parent=Os12t0420100-01
Chr12	irgsp1_rep	CDS	13101589	13101800	.	+	1	Parent=Os12t0420100-01
Chr12	irgsp1_rep	CDS	13101898	13101929	.	+	2	Parent=Os12t0420100-01
Chr12	irgsp1_rep	CDS	13102008	13102110	.	+	0	Parent=Os12t0420100-01
Chr12	irgsp1_rep	CDS	13102225	13102499	.	+	2	Parent=Os12t0420100-01
Chr12	irgsp1_rep	three_prime_UTR	13102500	13102786	.	+	.	Parent=Os12t0420100-01
Chr12	irgsp1_rep	mRNA	13103675	13106278	.	+	.	ID=Os12t0420200-01;Name=Os12t0420200-01;Locus_id=Os12g0420200;RAP-DB Gene Symbol Synonym(s)=CSP41b%2C LGL1;RAP-DB Gene Name Synonym(s)=chloroplast stem-loop-binding protein of 41kDa b%2C light-green leaf 1%2C NAD-dependent epimerase/dehydratase;CGSNL Gene Symbol=YGL6;CGSNL Gene Name=YELLOW-GREEN LEAF 6;Oryzabase Gene Symbol Synonym(s)=CSP41b%2C LGL1;Oryzabase Gene Name Synonym(s)=NAD-dependent epimerase/dehydratase%2C chloroplast stem-loop-binding protein of 41 kDa b%2C light-green leaves 1%2C yellow-green leaf 6;Note=Chloroplast stem-loop-binding protein of 41 kDa b%2C Chlorophyll biosynthesis and photosynthesis;Transcript_evidence=AK111521;ORF_evidence=Q2QSR7;GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: coenzyme binding (GO:0050662);InterPro=NAD(P)-binding domain (IPR016040),NAD-dependent epimerase/dehydratase (IPR001509);NIAS_FLcDNA=J013002M10;Manual Curation=February 20%2C 2017;Literature_PMID=28167036;Oryzabase=12462;Expression=AK111521;TENOR=Os12t0420200-01;KEGG=Os12t0420200-01;Subcellular location=chloroplast (GO:0009507)
Chr12	irgsp1_rep	five_prime_UTR	13103675	13103763	.	+	.	Parent=Os12t0420200-01
Chr12	irgsp1_rep	CDS	13103764	13103853	.	+	0	Parent=Os12t0420200-01
Chr12	irgsp1_rep	CDS	13103950	13104090	.	+	0	Parent=Os12t0420200-01
Chr12	irgsp1_rep	CDS	13104187	13104273	.	+	0	Parent=Os12t0420200-01
Chr12	irgsp1_rep	CDS	13104519	13104609	.	+	0	Parent=Os12t0420200-01
Chr12	irgsp1_rep	CDS	13104816	13104870	.	+	2	Parent=Os12t0420200-01
Chr12	irgsp1_rep	CDS	13104970	13105030	.	+	1	Parent=Os12t0420200-01
Chr12	irgsp1_rep	CDS	13105120	13105341	.	+	0	Parent=Os12t0420200-01
Chr12	irgsp1_rep	CDS	13105434	13105550	.	+	0	Parent=Os12t0420200-01
Chr12	irgsp1_rep	CDS	13105650	13105739	.	+	0	Parent=Os12t0420200-01
Chr12	irgsp1_rep	CDS	13105846	13106022	.	+	0	Parent=Os12t0420200-01
Chr12	irgsp1_rep	three_prime_UTR	13106023	13106278	.	+	.	Parent=Os12t0420200-01
Chr12	irgsp1_rep	mRNA	13110904	13114351	.	+	.	ID=Os12t0420300-01;Name=Os12t0420300-01;Locus_id=Os12g0420300;Oryzabase Gene Symbol Synonym(s)=OsPFA-DSP4%2C OsSTA281;Oryzabase Gene Name Synonym(s)=plant and fungi atypical dual-specificity phosphatase 4;Note=Similar to tyrosine specific protein phosphatase family protein.;Transcript_evidence=AK071692 (DDBJ%2C Best hit);ORF_evidence=XP_002889531.1 (RefSeq);GO=Molecular Function: protein tyrosine phosphatase activity (GO:0004725);InterPro=Protein-tyrosine phosphatase%2C SIW14-like (IPR004861),Protein-tyrosine phosphatase%2C dual specificity phosphatase%2C eukaryotic (IPR020428);NIAS_FLcDNA=J023108B13;Oryzabase=10262;TENOR=Os12t0420300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	13110904	13111079	.	+	.	Parent=Os12t0420300-01
Chr12	irgsp1_rep	CDS	13111080	13111246	.	+	0	Parent=Os12t0420300-01
Chr12	irgsp1_rep	CDS	13111352	13111445	.	+	1	Parent=Os12t0420300-01
Chr12	irgsp1_rep	CDS	13113801	13113806	.	+	0	Parent=Os12t0420300-01
Chr12	irgsp1_rep	three_prime_UTR	13113807	13113844	.	+	.	Parent=Os12t0420300-01
Chr12	irgsp1_rep	three_prime_UTR	13113932	13114351	.	+	.	Parent=Os12t0420300-01
Chr12	irgsp1_rep	mRNA	13115340	13117235	.	+	.	ID=Os12t0420400-01;Name=Os12t0420400-01;Locus_id=Os12g0420400;CGSNL Gene Symbol=PSAL;CGSNL Gene Name=PHOTOSYSTEM I SUBUNIT;Oryzabase Gene Symbol Synonym(s)=PsaL%2C OsPSAL;Oryzabase Gene Name Synonym(s)=PSI subunit PsaL%2C photosystem I subunit PsaL;Note=Similar to Photosystem I reaction center subunit XI%2C chloroplast precursor (PSI- L) (PSI subunit V).;Transcript_evidence=AK119162 (DDBJ%2C Best hit),AK058207 (DDBJ%2C Best hit);ORF_evidence=P23993 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem I (GO:0009522),Cellular Component: photosystem I reaction center (GO:0009538);InterPro=Photosystem I PsaL%2C reaction centre subunit XI (IPR003757);NIAS_FLcDNA=001-036-D08,001-010-A09;Oryzabase=9592;Expression=AK119162;TENOR=Os12t0420400-01;KEGG=Os12t0420400-01
Chr12	irgsp1_rep	five_prime_UTR	13115340	13115459	.	+	.	Parent=Os12t0420400-01
Chr12	irgsp1_rep	CDS	13115460	13115594	.	+	0	Parent=Os12t0420400-01
Chr12	irgsp1_rep	CDS	13116568	13117059	.	+	0	Parent=Os12t0420400-01
Chr12	irgsp1_rep	three_prime_UTR	13117060	13117235	.	+	.	Parent=Os12t0420400-01
Chr12	irgsp1_rep	mRNA	13115368	13117325	.	+	.	ID=Os12t0420400-02;Name=Os12t0420400-02;Locus_id=Os12g0420400;CGSNL Gene Symbol=PSAL;CGSNL Gene Name=PHOTOSYSTEM I SUBUNIT;Oryzabase Gene Symbol Synonym(s)=PsaL%2C OsPSAL;Oryzabase Gene Name Synonym(s)=PSI subunit PsaL%2C photosystem I subunit PsaL;Note=Similar to Photosystem I reaction center subunit XI%2C chloroplast precursor (PSI- L) (PSI subunit V).;Transcript_evidence=AK059750 (DDBJ%2C Best hit),AK099109 (DDBJ%2C Best hit),AK105154 (DDBJ%2C Best hit);ORF_evidence=P23993 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem I (GO:0009522),Cellular Component: photosystem I reaction center (GO:0009538);InterPro=Photosystem I PsaL%2C reaction centre subunit XI (IPR003757);NIAS_FLcDNA=006-203-B01,J023030F01,001-103-F07;Oryzabase=9592;TENOR=Os12t0420400-02
Chr12	irgsp1_rep	five_prime_UTR	13115368	13115459	.	+	.	Parent=Os12t0420400-02
Chr12	irgsp1_rep	CDS	13115460	13115594	.	+	0	Parent=Os12t0420400-02
Chr12	irgsp1_rep	CDS	13116568	13117059	.	+	0	Parent=Os12t0420400-02
Chr12	irgsp1_rep	three_prime_UTR	13117060	13117325	.	+	.	Parent=Os12t0420400-02
Chr12	irgsp1_rep	mRNA	13115368	13115837	.	+	.	ID=Os12t0420400-03;Name=Os12t0420400-03;Locus_id=Os12g0420400;CGSNL Gene Symbol=PSAL;CGSNL Gene Name=PHOTOSYSTEM I SUBUNIT;Oryzabase Gene Symbol Synonym(s)=PsaL%2C OsPSAL;Oryzabase Gene Name Synonym(s)=PSI subunit PsaL%2C photosystem I subunit PsaL;Note=Similar to Photosystem I reaction center subunit XI%2C chloroplastic.;Transcript_evidence=AK063111 (DDBJ%2C Best hit);ORF_evidence=P23993 (UniProt);NIAS_FLcDNA=001-111-D07;Oryzabase=9592;Expression=AK063111;TENOR=Os12t0420400-03;KEGG=Os12t0420400-03
Chr12	irgsp1_rep	five_prime_UTR	13115368	13115459	.	+	.	Parent=Os12t0420400-03
Chr12	irgsp1_rep	CDS	13115460	13115612	.	+	0	Parent=Os12t0420400-03
Chr12	irgsp1_rep	three_prime_UTR	13115613	13115837	.	+	.	Parent=Os12t0420400-03
Chr12	irgsp1_rep	mRNA	13160334	13163269	.	+	.	ID=Os12t0420866-01;Name=Os12t0420866-01;Locus_id=Os12g0420866;Note=Hypothetical gene.;Transcript_evidence=AK288440 (DDBJ%2C Best hit);ORF_evidence=A3CGS5 (UniProt);NIAS_FLcDNA=J090034G20;TENOR=Os12t0420866-01;KEGG=Os12t0420866-01
Chr12	irgsp1_rep	five_prime_UTR	13160334	13162296	.	+	.	Parent=Os12t0420866-01
Chr12	irgsp1_rep	CDS	13162297	13162575	.	+	0	Parent=Os12t0420866-01
Chr12	irgsp1_rep	three_prime_UTR	13162576	13163269	.	+	.	Parent=Os12t0420866-01
Chr12	irgsp1_rep	mRNA	13177329	13178929	.	+	.	ID=Os12t0421000-01;Name=Os12t0421000-01;Locus_id=Os12g0421000;Note=Similar to Barley stem rust resistance protein.;Transcript_evidence=AK071491 (DDBJ%2C Best hit);ORF_evidence=Q2QSQ6 (UniProt);GO=Biological Process: metal ion transport (GO:0030001),Molecular Function: metal ion binding (GO:0046872);InterPro=Heavy metal-associated domain%2C HMA (IPR006121);NIAS_FLcDNA=J023098J19;Expression=AK071491;TENOR=Os12t0421000-01;KEGG=Os12t0421000-01
Chr12	irgsp1_rep	five_prime_UTR	13177329	13177588	.	+	.	Parent=Os12t0421000-01
Chr12	irgsp1_rep	CDS	13177589	13177597	.	+	0	Parent=Os12t0421000-01
Chr12	irgsp1_rep	CDS	13177786	13177861	.	+	0	Parent=Os12t0421000-01
Chr12	irgsp1_rep	CDS	13177988	13178622	.	+	2	Parent=Os12t0421000-01
Chr12	irgsp1_rep	three_prime_UTR	13178623	13178929	.	+	.	Parent=Os12t0421000-01
Chr12	irgsp1_rep	mRNA	13199826	13200396	.	+	.	ID=Os12t0421300-00;Name=Os12t0421300-00;Locus_id=Os12g0421300;Note=Protein of unknown function DUF679 domain containing protein.;Transcript_evidence=AK374449 (DDBJ);ORF_evidence=B8ARJ4 (UniProt);InterPro=Protein of unknown function DUF679 (IPR007770);TENOR=Os12t0421300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	13199826	13199854	.	+	.	Parent=Os12t0421300-00
Chr12	irgsp1_rep	CDS	13199855	13200187	.	+	0	Parent=Os12t0421300-00
Chr12	irgsp1_rep	three_prime_UTR	13200188	13200396	.	+	.	Parent=Os12t0421300-00
Chr12	irgsp1_rep	mRNA	13328428	13329690	.	-	.	ID=Os12t0422800-01;Name=Os12t0422800-01;Locus_id=Os12g0422800;Note=Conserved hypothetical protein.;Transcript_evidence=AK241881 (DDBJ%2C Best hit);ORF_evidence=Q2QSM9 (UniProt);NIAS_FLcDNA=J065218P03;TENOR=Os12t0422800-01;KEGG=Os12t0422800-01
Chr12	irgsp1_rep	five_prime_UTR	13329543	13329690	.	-	.	Parent=Os12t0422800-01
Chr12	irgsp1_rep	CDS	13328676	13329542	.	-	0	Parent=Os12t0422800-01
Chr12	irgsp1_rep	three_prime_UTR	13328428	13328675	.	-	.	Parent=Os12t0422800-01
Chr12	irgsp1_rep	mRNA	13355799	13356143	.	+	.	ID=Os12t0422971-00;Name=Os12t0422971-00;Locus_id=Os12g0422971;Note=Similar to NADH dehydrogenase subunit 9.;Transcript_evidence=AJ865075 (DDBJ);ORF_evidence=YP_588298.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: NADH dehydrogenase (ubiquinone) activity (GO:0008137);InterPro=NADH:ubiquinone oxidoreductase%2C 30kDa subunit (IPR001268);TENOR=Os12t0422971-00;KEGG=Os12t0422971-00 (EC:1.6.5.3%2C EC:1.6.99.3)
Chr12	irgsp1_rep	CDS	13355799	13356143	.	+	0	Parent=Os12t0422971-00
Chr12	irgsp1_rep	mRNA	13375575	13375991	.	-	.	ID=Os12t0423142-00;Name=Os12t0423142-00;Locus_id=Os12g0423142;Note=Similar to NADH dehydrogenase subunit 3.;Transcript_evidence=Z49772 (DDBJ);ORF_evidence=YP_514649.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: NADH dehydrogenase (ubiquinone) activity (GO:0008137);InterPro=NADH:ubiquinone/plastoquinone oxidoreductase%2C chain 3 (IPR000440);TENOR=Os12t0423142-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	13375662	13375991	.	-	0	Parent=Os12t0423142-00
Chr12	irgsp1_rep	three_prime_UTR	13375575	13375661	.	-	.	Parent=Os12t0423142-00
Chr12	irgsp1_rep	mRNA	13386281	13386559	.	+	.	ID=Os12t0423313-00;Name=Os12t0423313-00;Locus_id=Os12g0423313;Note=Similar to NADH dehydrogenase subunit K.;Transcript_evidence=EU942290 (DDBJ);ORF_evidence=YP_003097580.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on NADH or NADPH (GO:0016651),Molecular Function: 4 iron%2C 4 sulfur cluster binding (GO:0051539);InterPro=[NiFe]-hydrogenase-3-type complex%2C small subunit/NADH:quinone oxidoreductase%2C subunit NuoB (IPR014406);TENOR=Os12t0423313-00;KEGG=Os12t0423313-00 (EC:1.6.5.3)
Chr12	irgsp1_rep	CDS	13386281	13386559	.	+	0	Parent=Os12t0423313-00
Chr12	irgsp1_rep	mRNA	13388164	13388454	.	+	.	ID=Os12t0423484-00;Name=Os12t0423484-00;Locus_id=Os12g0423484;Note=Similar to NADH dehydrogenase subunit K.;Transcript_evidence=EU942242 (DDBJ);ORF_evidence=YP_003097580.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: NADH dehydrogenase (ubiquinone) activity (GO:0008137),Molecular Function: oxidoreductase activity%2C acting on NADH or NADPH (GO:0016651),Molecular Function: quinone binding (GO:0048038),Molecular Function: 4 iron%2C 4 sulfur cluster binding (GO:0051539);InterPro=NADH:ubiquinone oxidoreductase-like%2C 20kDa subunit (IPR006137),[NiFe]-hydrogenase-3-type complex%2C small subunit/NADH:quinone oxidoreductase%2C subunit NuoB (IPR014406);TENOR=Os12t0423484-00;KEGG=Os12t0423484-00 (EC:1.6.5.3)
Chr12	irgsp1_rep	CDS	13388164	13388409	.	+	0	Parent=Os12t0423484-00
Chr12	irgsp1_rep	three_prime_UTR	13388410	13388454	.	+	.	Parent=Os12t0423484-00
Chr12	irgsp1_rep	mRNA	13398325	13398474	.	-	.	ID=Os12t0423944-00;Name=Os12t0423944-00;Locus_id=Os12g0423944;Note=Non-protein coding transcript.;Transcript_evidence=BT038177 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0423944-00
Chr12	irgsp1_rep	exon	13398325	13398474	.	-	.	Parent=Os12t0423944-00
Chr12	irgsp1_rep	mRNA	13400105	13400378	.	-	.	ID=Os12t0424062-00;Name=Os12t0424062-00;Locus_id=Os12g0424062;Note=Non-protein coding transcript.;Transcript_evidence=AK370817 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0424062-00
Chr12	irgsp1_rep	exon	13400105	13400378	.	-	.	Parent=Os12t0424062-00
Chr12	irgsp1_rep	mRNA	13404036	13404562	.	-	.	ID=Os12t0424180-00;Name=Os12t0424180-00;Locus_id=Os12g0424180;Note=Similar to ATP synthase F0 subunit 6.;Transcript_evidence=GU075810 (DDBJ);ORF_evidence=YP_514657.1 (RefSeq);GO=Biological Process: ATP synthesis coupled proton transport (GO:0015986),Cellular Component: proton-transporting ATP synthase complex%2C coupling factor F(o) (GO:0045263),Molecular Function: hydrogen ion transmembrane transporter activity (GO:0015078);InterPro=ATPase%2C F0 complex%2C subunit A (IPR000568);TENOR=Os12t0424180-00
Chr12	irgsp1_rep	CDS	13404068	13404562	.	-	0	Parent=Os12t0424180-00
Chr12	irgsp1_rep	three_prime_UTR	13404036	13404067	.	-	.	Parent=Os12t0424180-00
Chr12	irgsp1_rep	mRNA	13409857	13410534	.	-	.	ID=Os12t0424300-00;Name=Os12t0424300-00;Locus_id=Os12g0424300;Note=Similar to rp13.;Transcript_evidence=ab initio prediction;ORF_evidence=YP_398395.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: RNA binding (GO:0003723),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S13 (IPR001892),Ribosomal protein S13-like%2C H2TH (IPR010979);TENOR=Os12t0424300-00;KEGG=Os12t0424300-00
Chr12	irgsp1_rep	CDS	13410280	13410534	.	-	0	Parent=Os12t0424300-00
Chr12	irgsp1_rep	CDS	13409857	13410051	.	-	0	Parent=Os12t0424300-00
Chr12	irgsp1_rep	mRNA	13444520	13445604	.	+	.	ID=Os12t0424700-00;Name=Os12t0424700-00;Locus_id=Os12g0424700;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=AK375508 (DDBJ);ORF_evidence=NP_001066663.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os12t0424700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	13444520	13444610	.	+	.	Parent=Os12t0424700-00
Chr12	irgsp1_rep	CDS	13444611	13445594	.	+	0	Parent=Os12t0424700-00
Chr12	irgsp1_rep	three_prime_UTR	13445595	13445604	.	+	.	Parent=Os12t0424700-00
Chr12	irgsp1_rep	mRNA	13487313	13490733	.	+	.	ID=Os12t0425500-01;Name=Os12t0425500-01;Locus_id=Os12g0425500;Note=Hypothetical conserved gene.;Transcript_evidence=AK065441 (DDBJ%2C Best hit);ORF_evidence=B9GCW4 (UniProt);NIAS_FLcDNA=J013020E24;Expression=AK065441;TENOR=Os12t0425500-01;KEGG=Os12t0425500-01
Chr12	irgsp1_rep	five_prime_UTR	13487313	13487441	.	+	.	Parent=Os12t0425500-01
Chr12	irgsp1_rep	CDS	13487442	13487651	.	+	0	Parent=Os12t0425500-01
Chr12	irgsp1_rep	CDS	13487751	13487762	.	+	0	Parent=Os12t0425500-01
Chr12	irgsp1_rep	three_prime_UTR	13487763	13487925	.	+	.	Parent=Os12t0425500-01
Chr12	irgsp1_rep	three_prime_UTR	13488094	13488255	.	+	.	Parent=Os12t0425500-01
Chr12	irgsp1_rep	three_prime_UTR	13488364	13488516	.	+	.	Parent=Os12t0425500-01
Chr12	irgsp1_rep	three_prime_UTR	13488601	13488932	.	+	.	Parent=Os12t0425500-01
Chr12	irgsp1_rep	three_prime_UTR	13489966	13490733	.	+	.	Parent=Os12t0425500-01
Chr12	irgsp1_rep	mRNA	13492035	13499266	.	+	.	ID=Os12t0425600-01;Name=Os12t0425600-01;Locus_id=Os12g0425600;Note=Protein of unknown function DUF246%2C plant family protein.;Transcript_evidence=AK105475 (DDBJ%2C Best hit);ORF_evidence=Q2R4A9 (UniProt);InterPro=GDP-fucose protein O-fucosyltransferase (IPR019378),O-fucosyltransferase%2C plant (IPR024709);NIAS_FLcDNA=001-127-A05;Expression=AK105475;TENOR=Os12t0425600-01;KEGG=Os12t0425600-01
Chr12	irgsp1_rep	five_prime_UTR	13492035	13492035	.	+	.	Parent=Os12t0425600-01
Chr12	irgsp1_rep	CDS	13492036	13492170	.	+	0	Parent=Os12t0425600-01
Chr12	irgsp1_rep	CDS	13492303	13492461	.	+	0	Parent=Os12t0425600-01
Chr12	irgsp1_rep	CDS	13495480	13495561	.	+	0	Parent=Os12t0425600-01
Chr12	irgsp1_rep	CDS	13495658	13495728	.	+	2	Parent=Os12t0425600-01
Chr12	irgsp1_rep	CDS	13495857	13495945	.	+	0	Parent=Os12t0425600-01
Chr12	irgsp1_rep	CDS	13496575	13496698	.	+	1	Parent=Os12t0425600-01
Chr12	irgsp1_rep	CDS	13496790	13497073	.	+	0	Parent=Os12t0425600-01
Chr12	irgsp1_rep	CDS	13497510	13497639	.	+	1	Parent=Os12t0425600-01
Chr12	irgsp1_rep	CDS	13498161	13498790	.	+	0	Parent=Os12t0425600-01
Chr12	irgsp1_rep	three_prime_UTR	13498791	13499266	.	+	.	Parent=Os12t0425600-01
Chr12	irgsp1_rep	mRNA	13512112	13513425	.	-	.	ID=Os12t0425800-01;Name=Os12t0425800-01;Locus_id=Os12g0425800;Note=Hypothetical protein.;Transcript_evidence=AK071086 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J023078P11;Expression=AK071086;TENOR=Os12t0425800-01;KEGG=Os12t0425800-01
Chr12	irgsp1_rep	five_prime_UTR	13513093	13513425	.	-	.	Parent=Os12t0425800-01
Chr12	irgsp1_rep	CDS	13513089	13513092	.	-	0	Parent=Os12t0425800-01
Chr12	irgsp1_rep	CDS	13512892	13513013	.	-	2	Parent=Os12t0425800-01
Chr12	irgsp1_rep	CDS	13512351	13512572	.	-	0	Parent=Os12t0425800-01
Chr12	irgsp1_rep	three_prime_UTR	13512112	13512350	.	-	.	Parent=Os12t0425800-01
Chr12	irgsp1_rep	mRNA	13583045	13586163	.	-	.	ID=Os12t0426750-01;Name=Os12t0426750-01;Locus_id=Os12g0426750;Note=Conserved hypothetical protein.;Transcript_evidence=AK288227 (DDBJ%2C Best hit);ORF_evidence=Q84JA1 (UniProt);NIAS_FLcDNA=J090012F16;TENOR=Os12t0426750-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	13584996	13586163	.	-	.	Parent=Os12t0426750-01
Chr12	irgsp1_rep	CDS	13584798	13584995	.	-	0	Parent=Os12t0426750-01
Chr12	irgsp1_rep	three_prime_UTR	13583045	13584797	.	-	.	Parent=Os12t0426750-01
Chr12	irgsp1_rep	mRNA	13599841	13601184	.	-	.	ID=Os12t0427000-00;Name=Os12t0427000-00;Locus_id=Os12g0427000;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=EU968511 (DDBJ);ORF_evidence=NP_001176927.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os12t0427000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	13600474	13601184	.	-	0	Parent=Os12t0427000-00
Chr12	irgsp1_rep	CDS	13599841	13600410	.	-	0	Parent=Os12t0427000-00
Chr12	irgsp1_rep	mRNA	13602957	13604220	.	+	.	ID=Os12t0427100-00;Name=Os12t0427100-00;Locus_id=Os12g0427100;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=AK375508 (DDBJ);ORF_evidence=Q2QSJ0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os12t0427100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	13602957	13603965	.	+	0	Parent=Os12t0427100-00
Chr12	irgsp1_rep	CDS	13604082	13604155	.	+	2	Parent=Os12t0427100-00
Chr12	irgsp1_rep	three_prime_UTR	13604156	13604220	.	+	.	Parent=Os12t0427100-00
Chr12	irgsp1_rep	mRNA	13610317	13611468	.	+	.	ID=Os12t0427450-00;Name=Os12t0427450-00;Locus_id=Os12g0427450;Note=Similar to Protein kinase domain containing protein.;Transcript_evidence=AK375508 (DDBJ);ORF_evidence=Q2QSI9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os12t0427450-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	13610317	13611468	.	+	0	Parent=Os12t0427450-00
Chr12	irgsp1_rep	mRNA	13625375	13627550	.	-	.	ID=Os12t0427600-01;Name=Os12t0427600-01;Locus_id=Os12g0427600;Oryzabase Gene Symbol Synonym(s)=OsSub63%2C SUB63;Oryzabase Gene Name Synonym(s)=Subtilisin 63%2C SUBTILISIN 63;Note=Similar to Subtilase.;Transcript_evidence=AK242654 (DDBJ%2C Best hit);ORF_evidence=A9QY38 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type endopeptidase activity (GO:0004252);InterPro=Peptidase S8/S53%2C subtilisin/kexin/sedolisin (IPR000209),Peptidase S8%2C subtilisin-related (IPR015500),Peptidase S8%2C subtilisin%2C  Asp-active site (IPR023827);NIAS_FLcDNA=J090026J20;Oryzabase=20147;TENOR=Os12t0427600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	13627512	13627550	.	-	.	Parent=Os12t0427600-01
Chr12	irgsp1_rep	CDS	13625460	13627511	.	-	0	Parent=Os12t0427600-01
Chr12	irgsp1_rep	three_prime_UTR	13625375	13625459	.	-	.	Parent=Os12t0427600-01
Chr12	irgsp1_rep	mRNA	13657101	13658736	.	+	.	ID=Os12t0428000-01;Name=Os12t0428000-01;Locus_id=Os12g0428000;CGSNL Gene Symbol=STR7;CGSNL Gene Name=SULFURTRANSFERASE 7;Oryzabase Gene Symbol Synonym(s)=OsStr7;Oryzabase Gene Name Synonym(s)=Sulfurtransferase 7%2C Rhodanese like domain containing protein;Note=Similar to senescence-associated protein DIN1.;Transcript_evidence=AK063419 (DDBJ%2C Best hit),AK100244 (DDBJ%2C Best hit);ORF_evidence=NP_001151916.1 (RefSeq);InterPro=Rhodanese-like (IPR001763);NIAS_FLcDNA=001-115-C02,J023056E18;Oryzabase=12057;TENOR=Os12t0428000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	13657101	13657166	.	+	.	Parent=Os12t0428000-01
Chr12	irgsp1_rep	CDS	13657167	13657466	.	+	0	Parent=Os12t0428000-01
Chr12	irgsp1_rep	CDS	13657607	13657660	.	+	0	Parent=Os12t0428000-01
Chr12	irgsp1_rep	CDS	13657744	13657812	.	+	0	Parent=Os12t0428000-01
Chr12	irgsp1_rep	three_prime_UTR	13657813	13658736	.	+	.	Parent=Os12t0428000-01
Chr12	irgsp1_rep	mRNA	13664455	13675555	.	+	.	ID=Os12t0428200-00;Name=Os12t0428200-00;Locus_id=Os12g0428200;Note=Autophagy-related protein 1010 domain containing protein.;Transcript_evidence=AK251707 (DDBJ);ORF_evidence=A2ZJZ6 (UniProt);InterPro=Autophagy-related protein 1010 (IPR012445);TENOR=Os12t0428200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	13664455	13664625	.	+	0	Parent=Os12t0428200-00
Chr12	irgsp1_rep	CDS	13664753	13664789	.	+	0	Parent=Os12t0428200-00
Chr12	irgsp1_rep	CDS	13665623	13665708	.	+	2	Parent=Os12t0428200-00
Chr12	irgsp1_rep	CDS	13674754	13674849	.	+	0	Parent=Os12t0428200-00
Chr12	irgsp1_rep	CDS	13674951	13675110	.	+	0	Parent=Os12t0428200-00
Chr12	irgsp1_rep	CDS	13675201	13675354	.	+	2	Parent=Os12t0428200-00
Chr12	irgsp1_rep	CDS	13675469	13675547	.	+	1	Parent=Os12t0428200-00
Chr12	irgsp1_rep	three_prime_UTR	13675548	13675555	.	+	.	Parent=Os12t0428200-00
Chr12	irgsp1_rep	mRNA	13697949	13702502	.	+	.	ID=Os12t0428600-01;Name=Os12t0428600-01;Locus_id=Os12g0428600;Note=Similar to E3 ubiquitin protein ligase UPL2 (EC 6.3.2.-) (Ubiquitin-protein ligase 2).;Transcript_evidence=AK073264 (DDBJ%2C Best hit);ORF_evidence=XP_002980952.1 (RefSeq);GO=Biological Process: protein modification process (GO:0006464),Cellular Component: intracellular (GO:0005622),Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=HECT (IPR000569);NIAS_FLcDNA=J033025K01;Expression=AK073264;TENOR=Os12t0428600-01;KEGG=Os12t0428600-01
Chr12	irgsp1_rep	CDS	13697949	13698191	.	+	0	Parent=Os12t0428600-01
Chr12	irgsp1_rep	CDS	13698284	13698558	.	+	0	Parent=Os12t0428600-01
Chr12	irgsp1_rep	CDS	13698964	13700071	.	+	1	Parent=Os12t0428600-01
Chr12	irgsp1_rep	CDS	13700147	13700293	.	+	0	Parent=Os12t0428600-01
Chr12	irgsp1_rep	CDS	13700405	13700485	.	+	0	Parent=Os12t0428600-01
Chr12	irgsp1_rep	CDS	13700569	13700794	.	+	0	Parent=Os12t0428600-01
Chr12	irgsp1_rep	CDS	13700883	13701022	.	+	2	Parent=Os12t0428600-01
Chr12	irgsp1_rep	CDS	13701651	13701757	.	+	0	Parent=Os12t0428600-01
Chr12	irgsp1_rep	CDS	13701927	13702029	.	+	1	Parent=Os12t0428600-01
Chr12	irgsp1_rep	three_prime_UTR	13702030	13702502	.	+	.	Parent=Os12t0428600-01
Chr12	irgsp1_rep	mRNA	13700446	13702555	.	+	.	ID=Os12t0428600-02;Name=Os12t0428600-02;Locus_id=Os12g0428600;Note=Similar to predicted protein.;Transcript_evidence=AK071849 (DDBJ%2C Best hit);ORF_evidence=XP_002980952.1 (RefSeq);GO=Biological Process: protein modification process (GO:0006464),Cellular Component: intracellular (GO:0005622),Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=HECT (IPR000569);NIAS_FLcDNA=J023120O04;Expression=AK071849;TENOR=Os12t0428600-02;KEGG=Os12t0428600-02 (EC:6.3.2.19)
Chr12	irgsp1_rep	five_prime_UTR	13700446	13700446	.	+	.	Parent=Os12t0428600-02
Chr12	irgsp1_rep	CDS	13700447	13700485	.	+	0	Parent=Os12t0428600-02
Chr12	irgsp1_rep	CDS	13700569	13700794	.	+	0	Parent=Os12t0428600-02
Chr12	irgsp1_rep	CDS	13700883	13701022	.	+	2	Parent=Os12t0428600-02
Chr12	irgsp1_rep	CDS	13701651	13701757	.	+	0	Parent=Os12t0428600-02
Chr12	irgsp1_rep	CDS	13701927	13702029	.	+	1	Parent=Os12t0428600-02
Chr12	irgsp1_rep	three_prime_UTR	13702030	13702555	.	+	.	Parent=Os12t0428600-02
Chr12	irgsp1_rep	mRNA	13703310	13703839	.	+	.	ID=Os12t0428700-01;Name=Os12t0428700-01;Locus_id=Os12g0428700;Oryzabase Gene Symbol Synonym(s)=OsEnS-149;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 149;Note=Hypothetical protein.;Transcript_evidence=AK111293 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-181-A07;Oryzabase=18432;TENOR=Os12t0428700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	13703310	13703660	.	+	0	Parent=Os12t0428700-01
Chr12	irgsp1_rep	three_prime_UTR	13703661	13703839	.	+	.	Parent=Os12t0428700-01
Chr12	irgsp1_rep	mRNA	13739834	13739969	.	-	.	ID=Os12t0429050-00;Name=Os12t0429050-00;Locus_id=Os12g0429050;Note=Non-protein coding transcript.;Transcript_evidence=BT087033 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0429050-00
Chr12	irgsp1_rep	exon	13739834	13739969	.	-	.	Parent=Os12t0429050-00
Chr12	irgsp1_rep	mRNA	13761554	13782378	.	-	.	ID=Os12t0429200-01;Name=Os12t0429200-01;Locus_id=Os12g0429200;CGSNL Gene Symbol=BGAL13;CGSNL Gene Name=BETA-GALACTOSIDASE 13;Oryzabase Gene Symbol Synonym(s)=OsBgal13%2C OsBGal13;Oryzabase Gene Name Synonym(s)=Beta-galactosidase 15%2C Lactase 15;Note=Similar to Relative to SR12 protein (Fragment).;Transcript_evidence=AK065546 (DDBJ%2C Best hit);ORF_evidence=C5YSN7 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: hydrolase activity%2C hydrolyzing O-glycosyl compounds (GO:0004553),Molecular Function: sugar binding (GO:0005529),Molecular Function: cation binding (GO:0043169);InterPro=D-galactoside/L-rhamnose binding SUEL lectin domain (IPR000922),Glycoside hydrolase%2C family 35 (IPR001944),Galactose-binding domain-like (IPR008979),Glycoside hydrolase%2C subgroup%2C catalytic domain (IPR013781),Glycoside hydrolase%2C superfamily (IPR017853),Glycoside hydrolase%2C family 35%2C conserved site (IPR019801);NIAS_FLcDNA=J013031G01;Oryzabase=8287;Expression=AK065546;TENOR=Os12t0429200-01;KEGG=Os12t0429200-01
Chr12	irgsp1_rep	five_prime_UTR	13782286	13782378	.	-	.	Parent=Os12t0429200-01
Chr12	irgsp1_rep	CDS	13782007	13782285	.	-	0	Parent=Os12t0429200-01
Chr12	irgsp1_rep	CDS	13781156	13781251	.	-	0	Parent=Os12t0429200-01
Chr12	irgsp1_rep	CDS	13781031	13781072	.	-	0	Parent=Os12t0429200-01
Chr12	irgsp1_rep	CDS	13780936	13781006	.	-	0	Parent=Os12t0429200-01
Chr12	irgsp1_rep	CDS	13780127	13780193	.	-	1	Parent=Os12t0429200-01
Chr12	irgsp1_rep	CDS	13779859	13779951	.	-	0	Parent=Os12t0429200-01
Chr12	irgsp1_rep	CDS	13779112	13779255	.	-	0	Parent=Os12t0429200-01
Chr12	irgsp1_rep	CDS	13778928	13779016	.	-	0	Parent=Os12t0429200-01
Chr12	irgsp1_rep	CDS	13777912	13778017	.	-	1	Parent=Os12t0429200-01
Chr12	irgsp1_rep	CDS	13776385	13776472	.	-	0	Parent=Os12t0429200-01
Chr12	irgsp1_rep	CDS	13776133	13776257	.	-	2	Parent=Os12t0429200-01
Chr12	irgsp1_rep	CDS	13771700	13771897	.	-	0	Parent=Os12t0429200-01
Chr12	irgsp1_rep	CDS	13769886	13770118	.	-	0	Parent=Os12t0429200-01
Chr12	irgsp1_rep	CDS	13769133	13769248	.	-	1	Parent=Os12t0429200-01
Chr12	irgsp1_rep	CDS	13767576	13767673	.	-	2	Parent=Os12t0429200-01
Chr12	irgsp1_rep	CDS	13766689	13766799	.	-	0	Parent=Os12t0429200-01
Chr12	irgsp1_rep	CDS	13765215	13765322	.	-	0	Parent=Os12t0429200-01
Chr12	irgsp1_rep	CDS	13763060	13763268	.	-	0	Parent=Os12t0429200-01
Chr12	irgsp1_rep	CDS	13762318	13762660	.	-	1	Parent=Os12t0429200-01
Chr12	irgsp1_rep	CDS	13761736	13761879	.	-	0	Parent=Os12t0429200-01
Chr12	irgsp1_rep	three_prime_UTR	13761554	13761735	.	-	.	Parent=Os12t0429200-01
Chr12	irgsp1_rep	mRNA	13773976	13775263	.	-	.	ID=Os12t0429300-01;Name=Os12t0429300-01;Locus_id=Os12g0429300;Note=Non-protein coding transcript.;Transcript_evidence=AK058910 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-008-G06;TENOR=Os12t0429300-01
Chr12	irgsp1_rep	exon	13773976	13775263	.	-	.	Parent=Os12t0429300-01
Chr12	irgsp1_rep	mRNA	13811586	13812175	.	+	.	ID=Os12t0429900-00;Name=Os12t0429900-00;Locus_id=Os12g0429900;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001176930.1 (RefSeq);TENOR=Os12t0429900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	13811586	13811963	.	+	0	Parent=Os12t0429900-00
Chr12	irgsp1_rep	CDS	13812071	13812175	.	+	0	Parent=Os12t0429900-00
Chr12	irgsp1_rep	mRNA	13815857	13816506	.	+	.	ID=Os12t0429950-00;Name=Os12t0429950-00;Locus_id=Os12g0429950;Note=Hypothetical gene.;Transcript_evidence=BT016818 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0429950-00;KEGG=Os12t0429950-00
Chr12	irgsp1_rep	five_prime_UTR	13815857	13815893	.	+	.	Parent=Os12t0429950-00
Chr12	irgsp1_rep	CDS	13815894	13816133	.	+	0	Parent=Os12t0429950-00
Chr12	irgsp1_rep	three_prime_UTR	13816134	13816217	.	+	.	Parent=Os12t0429950-00
Chr12	irgsp1_rep	three_prime_UTR	13816386	13816506	.	+	.	Parent=Os12t0429950-00
Chr12	irgsp1_rep	mRNA	13816011	13829807	.	-	.	ID=Os12t0430000-00;Name=Os12t0430000-00;Locus_id=Os12g0430000;Note=Hypothetical conserved gene.;Transcript_evidence=tplb0008m15 (Wheat FLcDNA);ORF_evidence=E4MY44 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888),Cellular Component: COPII vesicle coat (GO:0030127),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C Sec23/Sec24-type (IPR006895),Sec23/Sec24%2C trunk domain (IPR006896),Sec23/Sec24%2C helical domain (IPR006900),Sec23/Sec24 beta-sandwich (IPR012990);TENOR=Os12t0430000-00;KEGG=Os12t0430000-00
Chr12	irgsp1_rep	CDS	13829175	13829807	.	-	0	Parent=Os12t0430000-00
Chr12	irgsp1_rep	CDS	13828856	13829113	.	-	0	Parent=Os12t0430000-00
Chr12	irgsp1_rep	CDS	13827784	13827981	.	-	0	Parent=Os12t0430000-00
Chr12	irgsp1_rep	CDS	13827603	13827677	.	-	0	Parent=Os12t0430000-00
Chr12	irgsp1_rep	CDS	13827404	13827502	.	-	0	Parent=Os12t0430000-00
Chr12	irgsp1_rep	CDS	13826844	13826955	.	-	0	Parent=Os12t0430000-00
Chr12	irgsp1_rep	CDS	13826353	13826480	.	-	2	Parent=Os12t0430000-00
Chr12	irgsp1_rep	CDS	13826006	13826125	.	-	0	Parent=Os12t0430000-00
Chr12	irgsp1_rep	CDS	13823963	13824043	.	-	0	Parent=Os12t0430000-00
Chr12	irgsp1_rep	CDS	13823245	13823322	.	-	0	Parent=Os12t0430000-00
Chr12	irgsp1_rep	CDS	13823004	13823096	.	-	0	Parent=Os12t0430000-00
Chr12	irgsp1_rep	CDS	13822763	13822817	.	-	0	Parent=Os12t0430000-00
Chr12	irgsp1_rep	CDS	13820889	13820965	.	-	2	Parent=Os12t0430000-00
Chr12	irgsp1_rep	CDS	13820646	13820717	.	-	0	Parent=Os12t0430000-00
Chr12	irgsp1_rep	CDS	13820477	13820560	.	-	0	Parent=Os12t0430000-00
Chr12	irgsp1_rep	CDS	13819491	13819610	.	-	0	Parent=Os12t0430000-00
Chr12	irgsp1_rep	CDS	13819339	13819407	.	-	0	Parent=Os12t0430000-00
Chr12	irgsp1_rep	CDS	13818761	13818838	.	-	0	Parent=Os12t0430000-00
Chr12	irgsp1_rep	CDS	13817870	13818008	.	-	0	Parent=Os12t0430000-00
Chr12	irgsp1_rep	CDS	13817151	13817315	.	-	2	Parent=Os12t0430000-00
Chr12	irgsp1_rep	CDS	13816915	13817060	.	-	2	Parent=Os12t0430000-00
Chr12	irgsp1_rep	CDS	13816654	13816833	.	-	0	Parent=Os12t0430000-00
Chr12	irgsp1_rep	CDS	13816407	13816495	.	-	0	Parent=Os12t0430000-00
Chr12	irgsp1_rep	CDS	13816297	13816328	.	-	1	Parent=Os12t0430000-00
Chr12	irgsp1_rep	CDS	13816103	13816209	.	-	2	Parent=Os12t0430000-00
Chr12	irgsp1_rep	three_prime_UTR	13816011	13816102	.	-	.	Parent=Os12t0430000-00
Chr12	irgsp1_rep	mRNA	13865371	13867714	.	-	.	ID=Os12t0430750-01;Name=Os12t0430750-01;Locus_id=Os12g0430750;Note=Hypothetical conserved gene.;Transcript_evidence=AK288621 (DDBJ%2C Best hit);ORF_evidence=B8AK44 (UniProt);NIAS_FLcDNA=J090054F11;TENOR=Os12t0430750-01;KEGG=Os12t0430750-01
Chr12	irgsp1_rep	five_prime_UTR	13867262	13867714	.	-	.	Parent=Os12t0430750-01
Chr12	irgsp1_rep	CDS	13866968	13867261	.	-	0	Parent=Os12t0430750-01
Chr12	irgsp1_rep	three_prime_UTR	13865371	13866967	.	-	.	Parent=Os12t0430750-01
Chr12	irgsp1_rep	mRNA	13814444	13815312	.	+	.	ID=Os12t0430900-00;Name=Os12t0430900-00;Locus_id=Os12g0430900;Note=Similar to T27G7.21.;Transcript_evidence=ab initio prediction;ORF_evidence=Q9SJE0 (UniProt);TENOR=Os12t0430900-00
Chr12	irgsp1_rep	CDS	13814444	13814574	.	+	0	Parent=Os12t0430900-00
Chr12	irgsp1_rep	CDS	13814950	13815050	.	+	1	Parent=Os12t0430900-00
Chr12	irgsp1_rep	CDS	13815185	13815312	.	+	2	Parent=Os12t0430900-00
Chr12	irgsp1_rep	mRNA	13879364	13881474	.	+	.	ID=Os12t0431100-01;Name=Os12t0431100-01;Locus_id=Os12g0431100;CGSNL Gene Name=AAA-ATPASE 4;Oryzabase Gene Name Synonym(s)=OsAAA-ATPase4%2C OsAAA-ATPase 4%2C AAA-ATPase4;Note=ATPase%2C AAA-type%2C core domain containing protein.;Transcript_evidence=AK063710 (DDBJ%2C Best hit);ORF_evidence=Q5BHT3 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);NIAS_FLcDNA=001-120-B10;Oryzabase=23149;Expression=AK063710;TENOR=Os12t0431100-01;KEGG=Os12t0431100-01
Chr12	irgsp1_rep	five_prime_UTR	13879364	13879365	.	+	.	Parent=Os12t0431100-01
Chr12	irgsp1_rep	CDS	13879366	13880766	.	+	0	Parent=Os12t0431100-01
Chr12	irgsp1_rep	three_prime_UTR	13880767	13880780	.	+	.	Parent=Os12t0431100-01
Chr12	irgsp1_rep	three_prime_UTR	13881272	13881474	.	+	.	Parent=Os12t0431100-01
Chr12	irgsp1_rep	mRNA	13885480	13888224	.	-	.	ID=Os12t0431300-01;Name=Os12t0431300-01;Locus_id=Os12g0431300;Note=Six-bladed beta-propeller%2C TolB-like domain containing protein.;Transcript_evidence=AK110931 (DDBJ%2C Best hit);ORF_evidence=A2ZK03 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40/YVTN repeat-like-containing domain (IPR015943);NIAS_FLcDNA=002-173-F10;Expression=AK110931;TENOR=Os12t0431300-01;KEGG=Os12t0431300-01
Chr12	irgsp1_rep	five_prime_UTR	13888157	13888224	.	-	.	Parent=Os12t0431300-01
Chr12	irgsp1_rep	CDS	13885823	13888156	.	-	0	Parent=Os12t0431300-01
Chr12	irgsp1_rep	three_prime_UTR	13885480	13885822	.	-	.	Parent=Os12t0431300-01
Chr12	irgsp1_rep	mRNA	13913818	13915949	.	+	.	ID=Os12t0431700-00;Name=Os12t0431700-00;Locus_id=Os12g0431700;Note=Hypothetical conserved gene.;Transcript_evidence=CT835566 (DDBJ%2C Best hit);ORF_evidence=NP_001066680.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=von Willebrand factor%2C type A (IPR002035);TENOR=Os12t0431700-00;KEGG=Os12t0431700-00
Chr12	irgsp1_rep	five_prime_UTR	13913818	13913931	.	+	.	Parent=Os12t0431700-00
Chr12	irgsp1_rep	CDS	13913932	13913983	.	+	0	Parent=Os12t0431700-00
Chr12	irgsp1_rep	CDS	13914107	13914678	.	+	2	Parent=Os12t0431700-00
Chr12	irgsp1_rep	three_prime_UTR	13914679	13915949	.	+	.	Parent=Os12t0431700-00
Chr12	irgsp1_rep	mRNA	13914183	13915714	.	-	.	ID=Os12t0431850-00;Name=Os12t0431850-00;Locus_id=Os12g0431850;Note=Hypothetical protein.;Transcript_evidence=BT064817 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0431850-00
Chr12	irgsp1_rep	five_prime_UTR	13914773	13915714	.	-	.	Parent=Os12t0431850-00
Chr12	irgsp1_rep	five_prime_UTR	13914643	13914674	.	-	.	Parent=Os12t0431850-00
Chr12	irgsp1_rep	CDS	13914183	13914642	.	-	0	Parent=Os12t0431850-00
Chr12	irgsp1_rep	mRNA	13937184	13938386	.	-	.	ID=Os12t0432000-00;Name=Os12t0432000-00;Locus_id=Os12g0432000;CGSNL Gene Symbol=CDKG1;CGSNL Gene Name=CYCLIN-DEPENDENT KINASG1;Oryzabase Gene Symbol Synonym(s)=OsCDKG1;Oryzabase Gene Name Synonym(s)=cyclin-dependent kinase G-1;Note=Similar to Protein kinase domain containing protein.;Transcript_evidence=AK374420 (DDBJ);ORF_evidence=Q2QSH0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=22692;TENOR=Os12t0432000-00
Chr12	irgsp1_rep	CDS	13937184	13938386	.	-	0	Parent=Os12t0432000-00
Chr12	irgsp1_rep	mRNA	13964313	13968145	.	-	.	ID=Os12t0432301-01;Name=Os12t0432301-01;Locus_id=Os12g0432301;Note=Conserved hypothetical protein.;Transcript_evidence=AK288189 (DDBJ%2C Best hit);ORF_evidence=Q69JN9 (UniProt);NIAS_FLcDNA=J090006H10;TENOR=Os12t0432301-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	13964806	13968145	.	-	.	Parent=Os12t0432301-01
Chr12	irgsp1_rep	CDS	13964641	13964805	.	-	0	Parent=Os12t0432301-01
Chr12	irgsp1_rep	three_prime_UTR	13964313	13964640	.	-	.	Parent=Os12t0432301-01
Chr12	irgsp1_rep	mRNA	13982073	13982902	.	+	.	ID=Os12t0432600-01;Name=Os12t0432600-01;Locus_id=Os12g0432600;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK108851 (DDBJ%2C Best hit);ORF_evidence=NP_001146951.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);NIAS_FLcDNA=002-152-A08;Expression=AK108851;TENOR=Os12t0432600-01;KEGG=Os12t0432600-01
Chr12	irgsp1_rep	five_prime_UTR	13982073	13982144	.	+	.	Parent=Os12t0432600-01
Chr12	irgsp1_rep	CDS	13982145	13982702	.	+	0	Parent=Os12t0432600-01
Chr12	irgsp1_rep	three_prime_UTR	13982703	13982902	.	+	.	Parent=Os12t0432600-01
Chr12	irgsp1_rep	mRNA	13990533	13990808	.	+	.	ID=Os12t0432750-00;Name=Os12t0432750-00;Locus_id=Os12g0432750;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q657G4 (UniProt);TENOR=Os12t0432750-00;KEGG=Os12t0432750-00
Chr12	irgsp1_rep	CDS	13990533	13990808	.	+	0	Parent=Os12t0432750-00
Chr12	irgsp1_rep	mRNA	14009947	14010768	.	+	.	ID=Os12t0433066-00;Name=Os12t0433066-00;Locus_id=Os12g0433066;Note=Hypothetical gene.;Transcript_evidence=CT836538 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os12t0433066-00;KEGG=Os12t0433066-00
Chr12	irgsp1_rep	five_prime_UTR	14009947	14010106	.	+	.	Parent=Os12t0433066-00
Chr12	irgsp1_rep	CDS	14010107	14010358	.	+	0	Parent=Os12t0433066-00
Chr12	irgsp1_rep	three_prime_UTR	14010359	14010768	.	+	.	Parent=Os12t0433066-00
Chr12	irgsp1_rep	mRNA	14013372	14014396	.	-	.	ID=Os12t0433133-00;Name=Os12t0433133-00;Locus_id=Os12g0433133;CGSNL Gene Symbol=DLN258;CGSNL Gene Name=DLN REPRESSOR 258;Oryzabase Gene Symbol Synonym(s)=OsDLN258;Oryzabase Gene Name Synonym(s)=DLN repressor 258%2C DLN motif protein 258;Note=Similar to PHD-finger family protein%2C expressed.;Transcript_evidence=EU949379 (DDBJ);ORF_evidence=Q2QSD0 (UniProt);Oryzabase=23239;TENOR=Os12t0433133-00
Chr12	irgsp1_rep	CDS	14014135	14014396	.	-	0	Parent=Os12t0433133-00
Chr12	irgsp1_rep	CDS	14013372	14014048	.	-	2	Parent=Os12t0433133-00
Chr12	irgsp1_rep	mRNA	14015594	14016183	.	-	.	ID=Os12t0433200-01;Name=Os12t0433200-01;Locus_id=Os12g0433200;CGSNL Gene Symbol=DLN258;CGSNL Gene Name=DLN REPRESSOR 258;Oryzabase Gene Symbol Synonym(s)=OsDLN258;Oryzabase Gene Name Synonym(s)=DLN repressor 258%2C DLN motif protein 258;Note=Zinc finger%2C CCHC-type domain containing protein.;Transcript_evidence=AK058760 (DDBJ%2C Best hit);ORF_evidence=Q2QSD0 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878);NIAS_FLcDNA=001-001-B10;Oryzabase=23239;Expression=AK058760;TENOR=Os12t0433200-01;KEGG=Os12t0433200-01
Chr12	irgsp1_rep	five_prime_UTR	14016182	14016183	.	-	.	Parent=Os12t0433200-01
Chr12	irgsp1_rep	CDS	14015693	14016181	.	-	0	Parent=Os12t0433200-01
Chr12	irgsp1_rep	three_prime_UTR	14015594	14015692	.	-	.	Parent=Os12t0433200-01
Chr12	irgsp1_rep	mRNA	14026695	14037353	.	-	.	ID=Os12t0433500-01;Name=Os12t0433500-01;Locus_id=Os12g0433500;Note=Similar to FU (FUSED)%3B protein serine/threonine kinase.;Transcript_evidence=AK102130 (DDBJ%2C Best hit);ORF_evidence=NP_001077692.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Armadillo (IPR000225),Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033085C09;TENOR=Os12t0433500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	14037062	14037353	.	-	.	Parent=Os12t0433500-01
Chr12	irgsp1_rep	five_prime_UTR	14036947	14036976	.	-	.	Parent=Os12t0433500-01
Chr12	irgsp1_rep	CDS	14036857	14036946	.	-	0	Parent=Os12t0433500-01
Chr12	irgsp1_rep	CDS	14036667	14036741	.	-	0	Parent=Os12t0433500-01
Chr12	irgsp1_rep	CDS	14035991	14036083	.	-	0	Parent=Os12t0433500-01
Chr12	irgsp1_rep	CDS	14035824	14035898	.	-	0	Parent=Os12t0433500-01
Chr12	irgsp1_rep	CDS	14035648	14035740	.	-	0	Parent=Os12t0433500-01
Chr12	irgsp1_rep	CDS	14035158	14035221	.	-	0	Parent=Os12t0433500-01
Chr12	irgsp1_rep	CDS	14034576	14034660	.	-	2	Parent=Os12t0433500-01
Chr12	irgsp1_rep	CDS	14033888	14033960	.	-	1	Parent=Os12t0433500-01
Chr12	irgsp1_rep	CDS	14033739	14033807	.	-	0	Parent=Os12t0433500-01
Chr12	irgsp1_rep	CDS	14033570	14033647	.	-	0	Parent=Os12t0433500-01
Chr12	irgsp1_rep	CDS	14033380	14033482	.	-	0	Parent=Os12t0433500-01
Chr12	irgsp1_rep	CDS	14033175	14033309	.	-	2	Parent=Os12t0433500-01
Chr12	irgsp1_rep	CDS	14032282	14032420	.	-	2	Parent=Os12t0433500-01
Chr12	irgsp1_rep	CDS	14031881	14032052	.	-	1	Parent=Os12t0433500-01
Chr12	irgsp1_rep	CDS	14031194	14031292	.	-	0	Parent=Os12t0433500-01
Chr12	irgsp1_rep	CDS	14030548	14031105	.	-	0	Parent=Os12t0433500-01
Chr12	irgsp1_rep	CDS	14028521	14029666	.	-	0	Parent=Os12t0433500-01
Chr12	irgsp1_rep	CDS	14028213	14028446	.	-	0	Parent=Os12t0433500-01
Chr12	irgsp1_rep	CDS	14027946	14028089	.	-	0	Parent=Os12t0433500-01
Chr12	irgsp1_rep	CDS	14027799	14027879	.	-	0	Parent=Os12t0433500-01
Chr12	irgsp1_rep	CDS	14027485	14027673	.	-	0	Parent=Os12t0433500-01
Chr12	irgsp1_rep	CDS	14026875	14027120	.	-	0	Parent=Os12t0433500-01
Chr12	irgsp1_rep	three_prime_UTR	14026695	14026874	.	-	.	Parent=Os12t0433500-01
Chr12	irgsp1_rep	mRNA	14054315	14057340	.	+	.	ID=Os12t0433700-01;Name=Os12t0433700-01;Locus_id=Os12g0433700;Note=Lg106-like family protein.;Transcript_evidence=AK241796 (DDBJ%2C Best hit);ORF_evidence=NP_001148326.1 (RefSeq);InterPro=Endosulphine (IPR006760);NIAS_FLcDNA=J065208F07;TENOR=Os12t0433700-01;KEGG=Os12t0433700-01
Chr12	irgsp1_rep	five_prime_UTR	14054315	14054380	.	+	.	Parent=Os12t0433700-01
Chr12	irgsp1_rep	five_prime_UTR	14054517	14054530	.	+	.	Parent=Os12t0433700-01
Chr12	irgsp1_rep	CDS	14054531	14054578	.	+	0	Parent=Os12t0433700-01
Chr12	irgsp1_rep	CDS	14056069	14056125	.	+	0	Parent=Os12t0433700-01
Chr12	irgsp1_rep	CDS	14056392	14056439	.	+	0	Parent=Os12t0433700-01
Chr12	irgsp1_rep	CDS	14056549	14056605	.	+	0	Parent=Os12t0433700-01
Chr12	irgsp1_rep	CDS	14056748	14056801	.	+	0	Parent=Os12t0433700-01
Chr12	irgsp1_rep	three_prime_UTR	14056802	14056818	.	+	.	Parent=Os12t0433700-01
Chr12	irgsp1_rep	three_prime_UTR	14057065	14057340	.	+	.	Parent=Os12t0433700-01
Chr12	irgsp1_rep	mRNA	14109246	14114260	.	+	.	ID=Os12t0434400-00;Name=Os12t0434400-00;Locus_id=Os12g0434400;Note=Similar to predicted protein.;Transcript_evidence=AK354623 (DDBJ);ORF_evidence=NP_179997.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Biological Process: protein metabolic process (GO:0019538),Cellular Component: intracellular (GO:0005622),Cellular Component: cytoplasm (GO:0005737),Molecular Function: aminopeptidase activity (GO:0004177),Molecular Function: metalloexopeptidase activity (GO:0008235),Molecular Function: manganese ion binding (GO:0030145);InterPro=Peptidase M17%2C leucyl aminopeptidase%2C C-terminal (IPR000819),Peptidase M17%2C leucyl aminopeptidase%2C N-terminal (IPR008283),Peptidase M17 (IPR011356),Peptidase%2C M17%2C probable cytosol aminopeptidase (IPR023042);TENOR=Os12t0434400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	14109246	14109251	.	+	.	Parent=Os12t0434400-00
Chr12	irgsp1_rep	CDS	14109252	14109314	.	+	0	Parent=Os12t0434400-00
Chr12	irgsp1_rep	CDS	14109821	14110271	.	+	0	Parent=Os12t0434400-00
Chr12	irgsp1_rep	CDS	14110751	14110945	.	+	2	Parent=Os12t0434400-00
Chr12	irgsp1_rep	CDS	14111051	14111276	.	+	2	Parent=Os12t0434400-00
Chr12	irgsp1_rep	CDS	14111663	14111789	.	+	1	Parent=Os12t0434400-00
Chr12	irgsp1_rep	CDS	14111873	14111968	.	+	0	Parent=Os12t0434400-00
Chr12	irgsp1_rep	CDS	14112357	14112434	.	+	0	Parent=Os12t0434400-00
Chr12	irgsp1_rep	CDS	14112819	14112879	.	+	0	Parent=Os12t0434400-00
Chr12	irgsp1_rep	CDS	14113009	14113196	.	+	2	Parent=Os12t0434400-00
Chr12	irgsp1_rep	CDS	14114126	14114254	.	+	0	Parent=Os12t0434400-00
Chr12	irgsp1_rep	three_prime_UTR	14114255	14114260	.	+	.	Parent=Os12t0434400-00
Chr12	irgsp1_rep	mRNA	14117449	14118578	.	+	.	ID=Os12t0434501-01;Name=Os12t0434501-01;Locus_id=Os12g0434501;Note=Non-protein coding transcript.;Transcript_evidence=AK242180 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J075160K01;TENOR=Os12t0434501-01
Chr12	irgsp1_rep	exon	14117449	14117584	.	+	.	Parent=Os12t0434501-01
Chr12	irgsp1_rep	exon	14118249	14118578	.	+	.	Parent=Os12t0434501-01
Chr12	irgsp1_rep	mRNA	14118666	14124433	.	-	.	ID=Os12t0434601-01;Name=Os12t0434601-01;Locus_id=Os12g0434601;Note=Similar to OSIGBa0130K07.4 protein.;Transcript_evidence=AK288968 (DDBJ%2C Best hit);ORF_evidence=Q01LK3 (UniProt);NIAS_FLcDNA=J090084M24;TENOR=Os12t0434601-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	14121650	14124433	.	-	.	Parent=Os12t0434601-01
Chr12	irgsp1_rep	CDS	14121434	14121649	.	-	0	Parent=Os12t0434601-01
Chr12	irgsp1_rep	three_prime_UTR	14118666	14121433	.	-	.	Parent=Os12t0434601-01
Chr12	irgsp1_rep	mRNA	14156868	14157167	.	-	.	ID=Os12t0434801-00;Name=Os12t0434801-00;Locus_id=Os12g0434801;Note=Hypothetical genes.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os12t0434801-00;KEGG=Os12t0434801-00
Chr12	irgsp1_rep	CDS	14156868	14157167	.	-	0	Parent=Os12t0434801-00
Chr12	irgsp1_rep	mRNA	14219584	14220921	.	-	.	ID=Os12t0435000-00;Name=Os12t0435000-00;Locus_id=Os12g0435000;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QSA5 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Zinc finger%2C CCHC retroviral-type (IPR013084);TENOR=Os12t0435000-00;KEGG=Os12t0435000-00
Chr12	irgsp1_rep	CDS	14219584	14220921	.	-	0	Parent=Os12t0435000-00
Chr12	irgsp1_rep	mRNA	14228035	14229318	.	+	.	ID=Os12t0435100-01;Name=Os12t0435100-01;Locus_id=Os12g0435100;Note=Hypothetical protein.;Transcript_evidence=AK107846 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-134-A03;Expression=AK107846;TENOR=Os12t0435100-01;KEGG=Os12t0435100-01
Chr12	irgsp1_rep	five_prime_UTR	14228035	14228093	.	+	.	Parent=Os12t0435100-01
Chr12	irgsp1_rep	CDS	14228094	14228202	.	+	0	Parent=Os12t0435100-01
Chr12	irgsp1_rep	CDS	14228457	14228707	.	+	2	Parent=Os12t0435100-01
Chr12	irgsp1_rep	three_prime_UTR	14228708	14229318	.	+	.	Parent=Os12t0435100-01
Chr12	irgsp1_rep	mRNA	14232905	14234854	.	-	.	ID=Os12t0435200-01;Name=Os12t0435200-01;Locus_id=Os12g0435200;RAP-DB Gene Symbol Synonym(s)=OsCCD4b;RAP-DB Gene Name Synonym(s)=carotenoid-cleavage dioxygenase 4b;CGSNL Gene Symbol=NCED2;CGSNL Gene Name=9-CIS-EPOXYCAROTENOID DIOXYGENASE 2;Oryzabase Gene Symbol Synonym(s)=OsNCED2%2C OsNced2%2C OsCCD4b%2C CCD4b;Oryzabase Gene Name Synonym(s)=9-cis-epoxycarotenoid dioxygenase 2%2C carotenoid-cleavage dioxygenase 4b;Note=Carotenoid-cleavage dioxygenase;Transcript_evidence=AK120176;ORF_evidence=Q5MBR6;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on single donors with incorporation of molecular oxygen%2C incorporation of two atoms of oxygen (GO:0016702);InterPro=Carotenoid oxygenase (IPR004294);NIAS_FLcDNA=J013033B20;Manual Curation=March 2%2C 2020;Literature_PMID=30124964;Oryzabase=11808;Expression=AK120176;TENOR=Os12t0435200-01;KEGG=Os12t0435200-01
Chr12	irgsp1_rep	five_prime_UTR	14234805	14234854	.	-	.	Parent=Os12t0435200-01
Chr12	irgsp1_rep	CDS	14233074	14234804	.	-	0	Parent=Os12t0435200-01
Chr12	irgsp1_rep	three_prime_UTR	14232905	14233073	.	-	.	Parent=Os12t0435200-01
Chr12	irgsp1_rep	mRNA	14411366	14412019	.	-	.	ID=Os12t0437800-01;Name=Os12t0437800-01;Locus_id=Os12g0437800;Oryzabase Gene Symbol Synonym(s)=Sci1%2C PR6%2C OsSci1%2C OsPR6;Oryzabase Gene Name Synonym(s)=pathogenesis-related 6;Note=Similar to MPI.;Transcript_evidence=AK063833 (DDBJ%2C Best hit),AK121693 (DDBJ%2C Best hit);ORF_evidence=Q6E672 (UniProt);GO=Biological Process: response to wounding (GO:0009611),Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Proteinase inhibitor I13%2C potato inhibitor I (IPR000864);NIAS_FLcDNA=001-122-B05,J033072A19;Oryzabase=12548;TENOR=Os12t0437800-01
Chr12	irgsp1_rep	five_prime_UTR	14411960	14412019	.	-	.	Parent=Os12t0437800-01
Chr12	irgsp1_rep	five_prime_UTR	14411742	14411757	.	-	.	Parent=Os12t0437800-01
Chr12	irgsp1_rep	CDS	14411544	14411741	.	-	0	Parent=Os12t0437800-01
Chr12	irgsp1_rep	three_prime_UTR	14411366	14411543	.	-	.	Parent=Os12t0437800-01
Chr12	irgsp1_rep	mRNA	14419117	14419367	.	-	.	ID=Os12t0437932-00;Name=Os12t0437932-00;Locus_id=Os12g0437932;Note=Hypothetical conserved gene.;Transcript_evidence=BT084630 (DDBJ);ORF_evidence=NP_001106050.1 (RefSeq);InterPro=Terpenoid synthase (IPR008949);TENOR=Os12t0437932-00;KEGG=Os12t0437932-00
Chr12	irgsp1_rep	CDS	14419215	14419367	.	-	0	Parent=Os12t0437932-00
Chr12	irgsp1_rep	three_prime_UTR	14419117	14419214	.	-	.	Parent=Os12t0437932-00
Chr12	irgsp1_rep	mRNA	14423865	14424890	.	-	.	ID=Os12t0438000-02;Name=Os12t0438000-02;Locus_id=Os12g0438000;Note=Similar to Histone H2A.;Transcript_evidence=AK071511 (DDBJ%2C Best hit),AK058913 (DDBJ%2C Best hit);ORF_evidence=B7EPP1 (UniProt);NIAS_FLcDNA=J023096P04,001-009-A01;Expression=AK071511;TENOR=Os12t0438000-02;KEGG=Os12t0438000-02
Chr12	irgsp1_rep	five_prime_UTR	14424777	14424890	.	-	.	Parent=Os12t0438000-02
Chr12	irgsp1_rep	CDS	14424588	14424776	.	-	0	Parent=Os12t0438000-02
Chr12	irgsp1_rep	CDS	14424166	14424384	.	-	0	Parent=Os12t0438000-02
Chr12	irgsp1_rep	three_prime_UTR	14423865	14424165	.	-	.	Parent=Os12t0438000-02
Chr12	irgsp1_rep	mRNA	14433331	14434052	.	-	.	ID=Os12t0438100-01;Name=Os12t0438100-01;Locus_id=Os12g0438100;Note=Conserved hypothetical protein.;Transcript_evidence=AK108104 (DDBJ%2C Best hit);ORF_evidence=A2ZK30 (UniProt);NIAS_FLcDNA=002-139-B05;Expression=AK108104;TENOR=Os12t0438100-01;KEGG=Os12t0438100-01
Chr12	irgsp1_rep	five_prime_UTR	14433972	14434052	.	-	.	Parent=Os12t0438100-01
Chr12	irgsp1_rep	CDS	14433887	14433971	.	-	0	Parent=Os12t0438100-01
Chr12	irgsp1_rep	CDS	14433530	14433771	.	-	2	Parent=Os12t0438100-01
Chr12	irgsp1_rep	three_prime_UTR	14433331	14433529	.	-	.	Parent=Os12t0438100-01
Chr12	irgsp1_rep	mRNA	14449900	14451648	.	+	.	ID=Os12t0438300-01;Name=Os12t0438300-01;Locus_id=Os12g0438300;Note=NB-ARC domain containing protein.;Transcript_evidence=AK067669 (DDBJ%2C Best hit);ORF_evidence=A2ZK34 (UniProt);GO=Molecular Function: ADP binding (GO:0043531);InterPro=NB-ARC (IPR002182);NIAS_FLcDNA=J013118K05;Expression=AK067669;TENOR=Os12t0438300-01;KEGG=Os12t0438300-01
Chr12	irgsp1_rep	five_prime_UTR	14449900	14450004	.	+	.	Parent=Os12t0438300-01
Chr12	irgsp1_rep	CDS	14450005	14451543	.	+	0	Parent=Os12t0438300-01
Chr12	irgsp1_rep	three_prime_UTR	14451544	14451648	.	+	.	Parent=Os12t0438300-01
Chr12	irgsp1_rep	mRNA	14453237	14456471	.	+	.	ID=Os12t0438400-01;Name=Os12t0438400-01;Locus_id=Os12g0438400;Note=Hypothetical conserved gene.;Transcript_evidence=AK061251 (DDBJ%2C Best hit),AK109421 (DDBJ%2C Best hit);ORF_evidence=B9GCY7 (UniProt);NIAS_FLcDNA=006-211-G01,006-305-E04;Expression=AK061251;TENOR=Os12t0438400-01;KEGG=Os12t0438400-01
Chr12	irgsp1_rep	five_prime_UTR	14453237	14453532	.	+	.	Parent=Os12t0438400-01
Chr12	irgsp1_rep	CDS	14453533	14453698	.	+	0	Parent=Os12t0438400-01
Chr12	irgsp1_rep	CDS	14455298	14455381	.	+	2	Parent=Os12t0438400-01
Chr12	irgsp1_rep	CDS	14455882	14456237	.	+	2	Parent=Os12t0438400-01
Chr12	irgsp1_rep	three_prime_UTR	14456238	14456471	.	+	.	Parent=Os12t0438400-01
Chr12	irgsp1_rep	mRNA	14453383	14456411	.	+	.	ID=Os12t0438400-02;Name=Os12t0438400-02;Locus_id=Os12g0438400;Note=Conserved hypothetical protein.;Transcript_evidence=AK068449 (DDBJ%2C Best hit);ORF_evidence=Q2QS65 (UniProt);NIAS_FLcDNA=J013153B14;Expression=AK068449;TENOR=Os12t0438400-02;KEGG=Os12t0438400-02
Chr12	irgsp1_rep	five_prime_UTR	14453383	14453532	.	+	.	Parent=Os12t0438400-02
Chr12	irgsp1_rep	CDS	14453533	14453910	.	+	0	Parent=Os12t0438400-02
Chr12	irgsp1_rep	three_prime_UTR	14453911	14456411	.	+	.	Parent=Os12t0438400-02
Chr12	irgsp1_rep	mRNA	14487420	14491026	.	-	.	ID=Os12t0438600-01;Name=Os12t0438600-01;Locus_id=Os12g0438600;CGSNL Gene Symbol=CBSCLC7;CGSNL Gene Name=CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 7;Oryzabase Gene Symbol Synonym(s)=OsCBSCLC7;Oryzabase Gene Name Synonym(s)=cystathionine b-synthase domain containing protein OsCBSCLC7%2C CBS domain containing protein OsCBSCLC7%2C CBS domain containing protein 7;Note=Similar to chloride channel protein.;Transcript_evidence=AK101523 (DDBJ%2C Best hit),AK106430 (DDBJ%2C Best hit);ORF_evidence=NP_001183936.1 (RefSeq);GO=Biological Process: chloride transport (GO:0006821),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: ion channel activity (GO:0005216),Molecular Function: voltage-gated chloride channel activity (GO:0005247);InterPro=Chloride channel%2C voltage gated (IPR001807),Chloride channel%2C core (IPR014743);NIAS_FLcDNA=J033046O16,002-103-C03;Oryzabase=10336;TENOR=Os12t0438600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	14490963	14491026	.	-	.	Parent=Os12t0438600-01
Chr12	irgsp1_rep	CDS	14490751	14490962	.	-	0	Parent=Os12t0438600-01
Chr12	irgsp1_rep	CDS	14490394	14490593	.	-	1	Parent=Os12t0438600-01
Chr12	irgsp1_rep	CDS	14490262	14490308	.	-	2	Parent=Os12t0438600-01
Chr12	irgsp1_rep	three_prime_UTR	14490131	14490261	.	-	.	Parent=Os12t0438600-01
Chr12	irgsp1_rep	three_prime_UTR	14488355	14490016	.	-	.	Parent=Os12t0438600-01
Chr12	irgsp1_rep	three_prime_UTR	14487420	14487784	.	-	.	Parent=Os12t0438600-01
Chr12	irgsp1_rep	mRNA	14503051	14503903	.	-	.	ID=Os12t0438900-01;Name=Os12t0438900-01;Locus_id=Os12g0438900;Note=Similar to Microsomal signal peptidase 12 kDa subunit family protein.;Transcript_evidence=AK241755 (DDBJ%2C Best hit);ORF_evidence=Q2QS62 (UniProt);GO=Biological Process: signal peptide processing (GO:0006465),Cellular Component: signal peptidase complex (GO:0005787),Cellular Component: integral to membrane (GO:0016021),Molecular Function: peptidase activity (GO:0008233);InterPro=Microsomal signal peptidase 12kDa subunit (IPR009542);NIAS_FLcDNA=J065204C04;TENOR=Os12t0438900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	14503902	14503903	.	-	.	Parent=Os12t0438900-01
Chr12	irgsp1_rep	CDS	14503770	14503901	.	-	0	Parent=Os12t0438900-01
Chr12	irgsp1_rep	CDS	14503331	14503621	.	-	0	Parent=Os12t0438900-01
Chr12	irgsp1_rep	three_prime_UTR	14503051	14503330	.	-	.	Parent=Os12t0438900-01
Chr12	irgsp1_rep	mRNA	14540725	14541603	.	-	.	ID=Os12t0439201-01;Name=Os12t0439201-01;Locus_id=Os12g0439201;Note=Hypothetical gene.;Transcript_evidence=AK288152 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J080317E15;TENOR=Os12t0439201-01;KEGG=Os12t0439201-01
Chr12	irgsp1_rep	five_prime_UTR	14541603	14541603	.	-	.	Parent=Os12t0439201-01
Chr12	irgsp1_rep	CDS	14541216	14541602	.	-	0	Parent=Os12t0439201-01
Chr12	irgsp1_rep	CDS	14541000	14541080	.	-	0	Parent=Os12t0439201-01
Chr12	irgsp1_rep	three_prime_UTR	14540725	14540999	.	-	.	Parent=Os12t0439201-01
Chr12	irgsp1_rep	mRNA	14597050	14597355	.	+	.	ID=Os12t0439700-00;Name=Os12t0439700-00;Locus_id=Os12g0439700;Note=Similar to RER1A protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001151498.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Retrieval of early ER protein Rer1 (IPR004932);TENOR=Os12t0439700-00
Chr12	irgsp1_rep	CDS	14597050	14597355	.	+	0	Parent=Os12t0439700-00
Chr12	irgsp1_rep	mRNA	14636389	14639280	.	+	.	ID=Os12t0440300-01;Name=Os12t0440300-01;Locus_id=Os12g0440300;Note=Conserved hypothetical protein.;Transcript_evidence=AK122111 (DDBJ%2C Best hit);ORF_evidence=C8TF43 (UniProt);NIAS_FLcDNA=J033127J19;TENOR=Os12t0440300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	14636389	14636558	.	+	.	Parent=Os12t0440300-01
Chr12	irgsp1_rep	CDS	14636559	14636789	.	+	0	Parent=Os12t0440300-01
Chr12	irgsp1_rep	three_prime_UTR	14636790	14637974	.	+	.	Parent=Os12t0440300-01
Chr12	irgsp1_rep	three_prime_UTR	14638998	14639280	.	+	.	Parent=Os12t0440300-01
Chr12	irgsp1_rep	mRNA	14652534	14652969	.	+	.	ID=Os12t0440400-01;Name=Os12t0440400-01;Locus_id=Os12g0440400;Note=Hypothetical protein.;Transcript_evidence=AK064643 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-114-B12;TENOR=Os12t0440400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	14652534	14652534	.	+	.	Parent=Os12t0440400-01
Chr12	irgsp1_rep	CDS	14652535	14652804	.	+	0	Parent=Os12t0440400-01
Chr12	irgsp1_rep	three_prime_UTR	14652805	14652969	.	+	.	Parent=Os12t0440400-01
Chr12	irgsp1_rep	mRNA	14714136	14716501	.	-	.	ID=Os12t0441300-00;Name=Os12t0441300-00;Locus_id=Os12g0441300;Note=O-methyltransferase%2C family 2 protein.;Transcript_evidence=AK330314 (DDBJ);ORF_evidence=NP_001148593.1 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: O-methyltransferase activity (GO:0008171),Molecular Function: protein dimerization activity (GO:0046983);InterPro=O-methyltransferase%2C family 2 (IPR001077),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Plant methyltransferase dimerisation (IPR012967),O-methyltransferase%2C COMT%2C eukaryota (IPR016461);TENOR=Os12t0441300-00;KEGG=Os12t0441300-00
Chr12	irgsp1_rep	five_prime_UTR	14716456	14716501	.	-	.	Parent=Os12t0441300-00
Chr12	irgsp1_rep	CDS	14715676	14716455	.	-	0	Parent=Os12t0441300-00
Chr12	irgsp1_rep	CDS	14714138	14714437	.	-	0	Parent=Os12t0441300-00
Chr12	irgsp1_rep	three_prime_UTR	14714136	14714137	.	-	.	Parent=Os12t0441300-00
Chr12	irgsp1_rep	mRNA	14750544	14752232	.	-	.	ID=Os12t0441600-00;Name=Os12t0441600-00;Locus_id=Os12g0441600;Note=O-methyltransferase%2C family 2 domain containing protein.;Transcript_evidence=EU963629 (DDBJ);ORF_evidence=GeneMark;GO=Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: O-methyltransferase activity (GO:0008171),Molecular Function: protein dimerization activity (GO:0046983);InterPro=O-methyltransferase%2C family 2 (IPR001077),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Plant methyltransferase dimerisation (IPR012967),O-methyltransferase%2C COMT%2C eukaryota (IPR016461);TENOR=Os12t0441600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	14751435	14752232	.	-	0	Parent=Os12t0441600-00
Chr12	irgsp1_rep	CDS	14750577	14750876	.	-	0	Parent=Os12t0441600-00
Chr12	irgsp1_rep	three_prime_UTR	14750544	14750576	.	-	.	Parent=Os12t0441600-00
Chr12	irgsp1_rep	mRNA	14754353	14757981	.	-	.	ID=Os12t0441700-01;Name=Os12t0441700-01;Locus_id=Os12g0441700;Note=Conserved hypothetical protein.;Transcript_evidence=AK069461 (DDBJ%2C Best hit);ORF_evidence=Q8LIA9 (UniProt);NIAS_FLcDNA=J023024O20;TENOR=Os12t0441700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	14757260	14757981	.	-	.	Parent=Os12t0441700-01
Chr12	irgsp1_rep	CDS	14757017	14757259	.	-	0	Parent=Os12t0441700-01
Chr12	irgsp1_rep	three_prime_UTR	14754353	14757016	.	-	.	Parent=Os12t0441700-01
Chr12	irgsp1_rep	mRNA	14823882	14824497	.	+	.	ID=Os12t0442700-01;Name=Os12t0442700-01;Locus_id=Os12g0442700;Note=Conserved hypothetical protein.;Transcript_evidence=AK111062 (DDBJ%2C Best hit);ORF_evidence=NP_001042824.1 (RefSeq);NIAS_FLcDNA=002-175-D09;Expression=AK111062;TENOR=Os12t0442700-01;KEGG=Os12t0442700-01
Chr12	irgsp1_rep	five_prime_UTR	14823882	14823904	.	+	.	Parent=Os12t0442700-01
Chr12	irgsp1_rep	CDS	14823905	14824237	.	+	0	Parent=Os12t0442700-01
Chr12	irgsp1_rep	three_prime_UTR	14824238	14824497	.	+	.	Parent=Os12t0442700-01
Chr12	irgsp1_rep	mRNA	14827496	14830607	.	-	.	ID=Os12t0442800-01;Name=Os12t0442800-01;Locus_id=Os12g0442800;Note=Similar to Sulfite oxidase (EC 1.8.3.1) (Moco containig protein AtMCP) (At-SO) (AtSOX).;Transcript_evidence=AK069818 (DDBJ%2C Best hit);ORF_evidence=Q2V993 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: binding (GO:0005488),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: molybdenum ion binding (GO:0030151),Molecular Function: metal ion binding (GO:0046872);InterPro=Oxidoreductase%2C molybdopterin-binding domain (IPR000572),Moybdenum cofactor oxidoreductase%2C dimerisation (IPR005066),Eukaryotic molybdopterin oxidoreductase (IPR008335),Immunoglobulin E-set (IPR014756),Oxidoreductase%2C molybdopterin binding site (IPR022407);NIAS_FLcDNA=J023028K01;Expression=AK069818;TENOR=Os12t0442800-01;KEGG=Os12t0442800-01 (EC:1.8.3.1)
Chr12	irgsp1_rep	five_prime_UTR	14830503	14830607	.	-	.	Parent=Os12t0442800-01
Chr12	irgsp1_rep	CDS	14830416	14830502	.	-	0	Parent=Os12t0442800-01
Chr12	irgsp1_rep	CDS	14830172	14830287	.	-	0	Parent=Os12t0442800-01
Chr12	irgsp1_rep	CDS	14830005	14830067	.	-	1	Parent=Os12t0442800-01
Chr12	irgsp1_rep	CDS	14829867	14829903	.	-	1	Parent=Os12t0442800-01
Chr12	irgsp1_rep	CDS	14829699	14829780	.	-	0	Parent=Os12t0442800-01
Chr12	irgsp1_rep	CDS	14829264	14829382	.	-	2	Parent=Os12t0442800-01
Chr12	irgsp1_rep	CDS	14829073	14829168	.	-	0	Parent=Os12t0442800-01
Chr12	irgsp1_rep	CDS	14828829	14828939	.	-	0	Parent=Os12t0442800-01
Chr12	irgsp1_rep	CDS	14828645	14828746	.	-	0	Parent=Os12t0442800-01
Chr12	irgsp1_rep	CDS	14828226	14828273	.	-	0	Parent=Os12t0442800-01
Chr12	irgsp1_rep	CDS	14827924	14828139	.	-	0	Parent=Os12t0442800-01
Chr12	irgsp1_rep	CDS	14827670	14827795	.	-	0	Parent=Os12t0442800-01
Chr12	irgsp1_rep	three_prime_UTR	14827496	14827669	.	-	.	Parent=Os12t0442800-01
Chr12	irgsp1_rep	mRNA	14838547	14845405	.	-	.	ID=Os12t0442900-01;Name=Os12t0442900-01;Locus_id=Os12g0442900;Note=DNA-binding SAP domain containing protein.;Transcript_evidence=AK073787 (DDBJ%2C Best hit);ORF_evidence=NP_001148486.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=DNA-binding SAP (IPR003034),Ubiquitin ligase%2C Det1/DDB1-complexing (IPR018276);NIAS_FLcDNA=J033066K13;Expression=AK073787;TENOR=Os12t0442900-01;KEGG=Os12t0442900-01
Chr12	irgsp1_rep	five_prime_UTR	14845245	14845405	.	-	.	Parent=Os12t0442900-01
Chr12	irgsp1_rep	CDS	14845101	14845244	.	-	0	Parent=Os12t0442900-01
Chr12	irgsp1_rep	CDS	14844939	14844984	.	-	0	Parent=Os12t0442900-01
Chr12	irgsp1_rep	CDS	14843858	14843981	.	-	2	Parent=Os12t0442900-01
Chr12	irgsp1_rep	CDS	14842912	14842991	.	-	1	Parent=Os12t0442900-01
Chr12	irgsp1_rep	CDS	14840801	14840904	.	-	2	Parent=Os12t0442900-01
Chr12	irgsp1_rep	CDS	14838695	14838733	.	-	0	Parent=Os12t0442900-01
Chr12	irgsp1_rep	three_prime_UTR	14838547	14838694	.	-	.	Parent=Os12t0442900-01
Chr12	irgsp1_rep	mRNA	14866174	14867766	.	-	.	ID=Os12t0443000-00;Name=Os12t0443000-00;Locus_id=Os12g0443000;CGSNL Gene Symbol=CYP94B5;CGSNL Gene Name=CYTOCHROME P450 94B5;Oryzabase Gene Symbol Synonym(s)=OsCYP94B5;Oryzabase Gene Name Synonym(s)=CytoChrome P450 94B5;Note=Similar to CytoChrome P450 family protein%2C expressed.;Transcript_evidence=FP099721 (DDBJ);ORF_evidence=B6SRJ8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401);Oryzabase=23103;TENOR=Os12t0443000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	14866177	14867766	.	-	0	Parent=Os12t0443000-00
Chr12	irgsp1_rep	three_prime_UTR	14866174	14866176	.	-	.	Parent=Os12t0443000-00
Chr12	irgsp1_rep	mRNA	14868149	14870387	.	-	.	ID=Os12t0443101-01;Name=Os12t0443101-01;Locus_id=Os12g0443101;Note=Hypothetical conserved gene.;Transcript_evidence=AK289022 (DDBJ%2C Best hit);ORF_evidence=Q2R215 (UniProt);NIAS_FLcDNA=J090090G17;TENOR=Os12t0443101-01;KEGG=Os12t0443101-01
Chr12	irgsp1_rep	five_prime_UTR	14869993	14870387	.	-	.	Parent=Os12t0443101-01
Chr12	irgsp1_rep	CDS	14869675	14869992	.	-	0	Parent=Os12t0443101-01
Chr12	irgsp1_rep	three_prime_UTR	14868149	14869674	.	-	.	Parent=Os12t0443101-01
Chr12	irgsp1_rep	mRNA	14883197	14884310	.	+	.	ID=Os12t0443200-00;Name=Os12t0443200-00;Locus_id=Os12g0443200;Note=Hypothetical conserved gene.;Transcript_evidence=tplb0013j24 (Wheat FLcDNA);ORF_evidence=Q2QS15 (UniProt);InterPro=Proteinase inhibitor I29%2C cathepsin propeptide (IPR013201);TENOR=Os12t0443200-00;KEGG=Os12t0443200-00
Chr12	irgsp1_rep	CDS	14883197	14883721	.	+	0	Parent=Os12t0443200-00
Chr12	irgsp1_rep	three_prime_UTR	14883722	14883772	.	+	.	Parent=Os12t0443200-00
Chr12	irgsp1_rep	three_prime_UTR	14883864	14884310	.	+	.	Parent=Os12t0443200-00
Chr12	irgsp1_rep	mRNA	14887908	14890425	.	+	.	ID=Os12t0443500-01;Name=Os12t0443500-01;Locus_id=Os12g0443500;Note=Similar to UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase) (UDP-GlcDH) (UDPGDH).;Transcript_evidence=AK105768 (DDBJ%2C Best hit),AK104003 (DDBJ%2C Best hit);ORF_evidence=B6TBY8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: NAD binding (GO:0051287);InterPro=UDP-glucose/GDP-mannose dehydrogenase%2C N-terminal (IPR001732),6-phosphogluconate dehydrogenase%2C C-terminal-like (IPR008927),UDP-glucose/GDP-mannose dehydrogenase%2C dimerisation (IPR014026),UDP-glucose/GDP-mannose dehydrogenase%2C C-terminal (IPR014027),NAD(P)-binding domain (IPR016040),Nucleotide sugar dehydrogenase (IPR017476),CytoChrome c1%2C transmembrane anchor%2C C-terminal (IPR021157);NIAS_FLcDNA=001-202-E05,001-019-H11;TENOR=Os12t0443500-01
Chr12	irgsp1_rep	five_prime_UTR	14887908	14888006	.	+	.	Parent=Os12t0443500-01
Chr12	irgsp1_rep	five_prime_UTR	14888660	14888680	.	+	.	Parent=Os12t0443500-01
Chr12	irgsp1_rep	CDS	14888681	14890123	.	+	0	Parent=Os12t0443500-01
Chr12	irgsp1_rep	three_prime_UTR	14890124	14890425	.	+	.	Parent=Os12t0443500-01
Chr12	irgsp1_rep	mRNA	14893170	14896144	.	+	.	ID=Os12t0443600-01;Name=Os12t0443600-01;Locus_id=Os12g0443600;Oryzabase Gene Name Synonym(s)=UDP-glucose 6-dehydrogenase;Note=Similar to UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase) (UDP-GlcDH) (UDPGDH).;Transcript_evidence=AK099096 (DDBJ%2C Best hit);ORF_evidence=B6TBY8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: NAD binding (GO:0051287);InterPro=UDP-glucose/GDP-mannose dehydrogenase%2C N-terminal (IPR001732),6-phosphogluconate dehydrogenase%2C C-terminal-like (IPR008927),UDP-glucose/GDP-mannose dehydrogenase%2C dimerisation (IPR014026),UDP-glucose/GDP-mannose dehydrogenase%2C C-terminal (IPR014027),NAD(P)-binding domain (IPR016040),Nucleotide sugar dehydrogenase (IPR017476),CytoChrome c1%2C transmembrane anchor%2C C-terminal (IPR021157);NIAS_FLcDNA=J023023C02;Oryzabase=21913;Expression=AK099096;TENOR=Os12t0443600-01;KEGG=Os12t0443600-01 (EC:1.1.1.22)
Chr12	irgsp1_rep	five_prime_UTR	14893170	14893383	.	+	.	Parent=Os12t0443600-01
Chr12	irgsp1_rep	five_prime_UTR	14894537	14894556	.	+	.	Parent=Os12t0443600-01
Chr12	irgsp1_rep	CDS	14894557	14895999	.	+	0	Parent=Os12t0443600-01
Chr12	irgsp1_rep	three_prime_UTR	14896000	14896144	.	+	.	Parent=Os12t0443600-01
Chr12	irgsp1_rep	mRNA	14893911	14896224	.	+	.	ID=Os12t0443600-02;Name=Os12t0443600-02;Locus_id=Os12g0443600;Oryzabase Gene Name Synonym(s)=UDP-glucose 6-dehydrogenase;Note=Similar to UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase) (UDP-GlcDH) (UDPGDH).;Transcript_evidence=AK103919 (DDBJ%2C Best hit);ORF_evidence=B6TBY8 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: NAD binding (GO:0051287);InterPro=UDP-glucose/GDP-mannose dehydrogenase%2C N-terminal (IPR001732),6-phosphogluconate dehydrogenase%2C C-terminal-like (IPR008927),UDP-glucose/GDP-mannose dehydrogenase%2C dimerisation (IPR014026),UDP-glucose/GDP-mannose dehydrogenase%2C C-terminal (IPR014027),NAD(P)-binding domain (IPR016040),Nucleotide sugar dehydrogenase (IPR017476),CytoChrome c1%2C transmembrane anchor%2C C-terminal (IPR021157);NIAS_FLcDNA=001-013-A09;Oryzabase=21913;Expression=AK103919;TENOR=Os12t0443600-02;KEGG=Os12t0443600-02 (EC:1.1.1.22)
Chr12	irgsp1_rep	five_prime_UTR	14893911	14893996	.	+	.	Parent=Os12t0443600-02
Chr12	irgsp1_rep	five_prime_UTR	14894537	14894556	.	+	.	Parent=Os12t0443600-02
Chr12	irgsp1_rep	CDS	14894557	14895999	.	+	0	Parent=Os12t0443600-02
Chr12	irgsp1_rep	three_prime_UTR	14896000	14896224	.	+	.	Parent=Os12t0443600-02
Chr12	irgsp1_rep	mRNA	14897203	14904687	.	-	.	ID=Os12t0443700-01;Name=Os12t0443700-01;Locus_id=Os12g0443700;Note=Similar to Glu-prolyl-tRNA aminoacyl synthetase (Fragment).;Transcript_evidence=AK069541 (DDBJ%2C Best hit);ORF_evidence=B7SDH3 (UniProt);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: prolyl-tRNA aminoacylation (GO:0006433),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: proline-tRNA ligase activity (GO:0004827),Molecular Function: ATP binding (GO:0005524);InterPro=Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved domain (IPR002314),Prolyl-tRNA synthetase%2C class IIa (IPR002316),Anticodon-binding (IPR004154),Prolyl-tRNA synthetase%2C class IIa%2C archaeal-type (IPR004499),Aminoacyl-tRNA synthetase%2C class II (IPR006195),Prolyl-tRNA synthetase%2C class II%2C C-terminal (IPR016061),Prolyl-tRNA synthetase%2C class II (IPR017449);NIAS_FLcDNA=J023023E12;Expression=AK069541;TENOR=Os12t0443700-01;KEGG=Os12t0443700-01 (EC:6.1.1.15)
Chr12	irgsp1_rep	five_prime_UTR	14904417	14904687	.	-	.	Parent=Os12t0443700-01
Chr12	irgsp1_rep	five_prime_UTR	14904296	14904303	.	-	.	Parent=Os12t0443700-01
Chr12	irgsp1_rep	CDS	14904250	14904295	.	-	0	Parent=Os12t0443700-01
Chr12	irgsp1_rep	CDS	14904062	14904144	.	-	2	Parent=Os12t0443700-01
Chr12	irgsp1_rep	CDS	14903405	14903497	.	-	0	Parent=Os12t0443700-01
Chr12	irgsp1_rep	CDS	14902819	14902935	.	-	0	Parent=Os12t0443700-01
Chr12	irgsp1_rep	CDS	14901807	14901994	.	-	0	Parent=Os12t0443700-01
Chr12	irgsp1_rep	CDS	14901114	14901180	.	-	1	Parent=Os12t0443700-01
Chr12	irgsp1_rep	CDS	14900303	14900425	.	-	0	Parent=Os12t0443700-01
Chr12	irgsp1_rep	CDS	14900034	14900186	.	-	0	Parent=Os12t0443700-01
Chr12	irgsp1_rep	CDS	14899468	14899752	.	-	0	Parent=Os12t0443700-01
Chr12	irgsp1_rep	CDS	14898183	14898401	.	-	0	Parent=Os12t0443700-01
Chr12	irgsp1_rep	CDS	14897594	14897687	.	-	0	Parent=Os12t0443700-01
Chr12	irgsp1_rep	CDS	14897385	14897449	.	-	2	Parent=Os12t0443700-01
Chr12	irgsp1_rep	three_prime_UTR	14897203	14897384	.	-	.	Parent=Os12t0443700-01
Chr12	irgsp1_rep	mRNA	14897149	14904527	.	-	.	ID=Os12t0443700-02;Name=Os12t0443700-02;Locus_id=Os12g0443700;Note=Similar to Glu-prolyl-tRNA aminoacyl synthetase (Fragment).;Transcript_evidence=AK104881 (DDBJ%2C Best hit);ORF_evidence=B7SDH3 (UniProt);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: prolyl-tRNA aminoacylation (GO:0006433),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: proline-tRNA ligase activity (GO:0004827),Molecular Function: ATP binding (GO:0005524);InterPro=Aminoacyl-tRNA synthetase%2C class II (G/ H/ P/ S)%2C conserved domain (IPR002314),Prolyl-tRNA synthetase%2C class IIa (IPR002316),Anticodon-binding (IPR004154),Prolyl-tRNA synthetase%2C class IIa%2C archaeal-type (IPR004499),Aminoacyl-tRNA synthetase%2C class II (IPR006195),Prolyl-tRNA synthetase%2C class II%2C C-terminal (IPR016061),Prolyl-tRNA synthetase%2C class II (IPR017449);NIAS_FLcDNA=001-044-H01;Expression=AK104881;TENOR=Os12t0443700-02;KEGG=Os12t0443700-02 (EC:6.1.1.15)
Chr12	irgsp1_rep	five_prime_UTR	14904417	14904527	.	-	.	Parent=Os12t0443700-02
Chr12	irgsp1_rep	five_prime_UTR	14904296	14904303	.	-	.	Parent=Os12t0443700-02
Chr12	irgsp1_rep	CDS	14904250	14904295	.	-	0	Parent=Os12t0443700-02
Chr12	irgsp1_rep	CDS	14904062	14904144	.	-	2	Parent=Os12t0443700-02
Chr12	irgsp1_rep	CDS	14903405	14903497	.	-	0	Parent=Os12t0443700-02
Chr12	irgsp1_rep	CDS	14902819	14902935	.	-	0	Parent=Os12t0443700-02
Chr12	irgsp1_rep	CDS	14901807	14901994	.	-	0	Parent=Os12t0443700-02
Chr12	irgsp1_rep	CDS	14901114	14901180	.	-	1	Parent=Os12t0443700-02
Chr12	irgsp1_rep	CDS	14900303	14900425	.	-	0	Parent=Os12t0443700-02
Chr12	irgsp1_rep	CDS	14900034	14900186	.	-	0	Parent=Os12t0443700-02
Chr12	irgsp1_rep	CDS	14899468	14899752	.	-	0	Parent=Os12t0443700-02
Chr12	irgsp1_rep	CDS	14898183	14898401	.	-	0	Parent=Os12t0443700-02
Chr12	irgsp1_rep	CDS	14897594	14897687	.	-	0	Parent=Os12t0443700-02
Chr12	irgsp1_rep	CDS	14897385	14897449	.	-	2	Parent=Os12t0443700-02
Chr12	irgsp1_rep	three_prime_UTR	14897149	14897384	.	-	.	Parent=Os12t0443700-02
Chr12	irgsp1_rep	mRNA	14897149	14900113	.	-	.	ID=Os12t0443700-03;Name=Os12t0443700-03;Locus_id=Os12g0443700;Note=Similar to Aminoacyl-tRNA synthase.;Transcript_evidence=AK119165 (DDBJ%2C Best hit);ORF_evidence=B7SDH3 (UniProt);GO=Biological Process: prolyl-tRNA aminoacylation (GO:0006433),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: proline-tRNA ligase activity (GO:0004827),Molecular Function: ATP binding (GO:0005524);InterPro=Anticodon-binding (IPR004154),Prolyl-tRNA synthetase%2C class IIa%2C archaeal-type (IPR004499),Prolyl-tRNA synthetase%2C class II%2C C-terminal (IPR016061),Prolyl-tRNA synthetase%2C class II (IPR017449);NIAS_FLcDNA=001-036-E06;Expression=AK119165;TENOR=Os12t0443700-03;KEGG=Os12t0443700-03 (EC:6.1.1.15)
Chr12	irgsp1_rep	five_prime_UTR	14900112	14900113	.	-	.	Parent=Os12t0443700-03
Chr12	irgsp1_rep	CDS	14900034	14900111	.	-	0	Parent=Os12t0443700-03
Chr12	irgsp1_rep	CDS	14899468	14899752	.	-	0	Parent=Os12t0443700-03
Chr12	irgsp1_rep	CDS	14898183	14898401	.	-	0	Parent=Os12t0443700-03
Chr12	irgsp1_rep	CDS	14897594	14897687	.	-	0	Parent=Os12t0443700-03
Chr12	irgsp1_rep	CDS	14897385	14897449	.	-	2	Parent=Os12t0443700-03
Chr12	irgsp1_rep	three_prime_UTR	14897149	14897384	.	-	.	Parent=Os12t0443700-03
Chr12	irgsp1_rep	mRNA	14912243	14916625	.	-	.	ID=Os12t0443800-01;Name=Os12t0443800-01;Locus_id=Os12g0443800;Oryzabase Gene Symbol Synonym(s)=OsFIGNL1%2C FIGNL1;Oryzabase Gene Name Synonym(s)=OsFidgetin-like 1%2C Fidgetin-like 1;Note=Hypothetical conserved gene.;Transcript_evidence=AK106497 (DDBJ%2C Best hit);ORF_evidence=Q2QS10 (UniProt);NIAS_FLcDNA=002-105-E04;Oryzabase=22071;Expression=AK106497;TENOR=Os12t0443800-01;KEGG=Os12t0443800-01
Chr12	irgsp1_rep	five_prime_UTR	14916569	14916625	.	-	.	Parent=Os12t0443800-01
Chr12	irgsp1_rep	CDS	14916249	14916568	.	-	0	Parent=Os12t0443800-01
Chr12	irgsp1_rep	CDS	14914459	14914597	.	-	1	Parent=Os12t0443800-01
Chr12	irgsp1_rep	CDS	14913725	14914156	.	-	0	Parent=Os12t0443800-01
Chr12	irgsp1_rep	CDS	14912719	14912976	.	-	0	Parent=Os12t0443800-01
Chr12	irgsp1_rep	three_prime_UTR	14912243	14912718	.	-	.	Parent=Os12t0443800-01
Chr12	irgsp1_rep	mRNA	14907829	14913790	.	-	.	ID=Os12t0443800-02;Name=Os12t0443800-02;Locus_id=Os12g0443800;Oryzabase Gene Symbol Synonym(s)=OsFIGNL1%2C FIGNL1;Oryzabase Gene Name Synonym(s)=OsFidgetin-like 1%2C Fidgetin-like 1;Note=Similar to ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding.;Transcript_evidence=AK102599 (DDBJ%2C Best hit);ORF_evidence=NP_189348.3 (RefSeq);NIAS_FLcDNA=J033098K21;Oryzabase=22071;TENOR=Os12t0443800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	14913725	14913790	.	-	0	Parent=Os12t0443800-02
Chr12	irgsp1_rep	CDS	14912738	14912976	.	-	0	Parent=Os12t0443800-02
Chr12	irgsp1_rep	CDS	14911080	14911207	.	-	1	Parent=Os12t0443800-02
Chr12	irgsp1_rep	CDS	14910773	14911011	.	-	2	Parent=Os12t0443800-02
Chr12	irgsp1_rep	three_prime_UTR	14910163	14910772	.	-	.	Parent=Os12t0443800-02
Chr12	irgsp1_rep	three_prime_UTR	14909615	14910082	.	-	.	Parent=Os12t0443800-02
Chr12	irgsp1_rep	three_prime_UTR	14909450	14909545	.	-	.	Parent=Os12t0443800-02
Chr12	irgsp1_rep	three_prime_UTR	14909228	14909355	.	-	.	Parent=Os12t0443800-02
Chr12	irgsp1_rep	three_prime_UTR	14908920	14909041	.	-	.	Parent=Os12t0443800-02
Chr12	irgsp1_rep	three_prime_UTR	14907829	14908325	.	-	.	Parent=Os12t0443800-02
Chr12	irgsp1_rep	mRNA	14907829	14916625	.	-	.	ID=Os12t0443800-03;Name=Os12t0443800-03;Locus_id=Os12g0443800;RAP-DB Gene Symbol Synonym(s)=OsFIGNL1;RAP-DB Gene Name Synonym(s)=OsFidgetin-like 1;Oryzabase Gene Symbol Synonym(s)=OsFIGNL1%2C FIGNL1;Oryzabase Gene Name Synonym(s)=OsFidgetin-like 1%2C Fidgetin-like 1;Note=AAA-ATPase%2C Regulation of male meiosis and anther development;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Molecular Function: ATP binding (GO:0005524);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),AAA+ ATPase domain (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),Vps4 oligomerisation%2C C-terminal (IPR015415),ATPase%2C AAA-type%2C conserved site (IPR003960);Manual Curation=October 30%2C 2017;Literature_PMID=29021797;Oryzabase=22071;Subcellular location=nucleus (GO:0005634)
Chr12	irgsp1_rep	five_prime_UTR	14916569	14916625	.	-	.	Parent=Os12t0443800-03
Chr12	irgsp1_rep	CDS	14916249	14916568	.	-	0	Parent=Os12t0443800-03
Chr12	irgsp1_rep	CDS	14914459	14914597	.	-	1	Parent=Os12t0443800-03
Chr12	irgsp1_rep	CDS	14913725	14914156	.	-	0	Parent=Os12t0443800-03
Chr12	irgsp1_rep	CDS	14912738	14912976	.	-	0	Parent=Os12t0443800-03
Chr12	irgsp1_rep	CDS	14911080	14911207	.	-	1	Parent=Os12t0443800-03
Chr12	irgsp1_rep	CDS	14910893	14911011	.	-	2	Parent=Os12t0443800-03
Chr12	irgsp1_rep	CDS	14910721	14910813	.	-	0	Parent=Os12t0443800-03
Chr12	irgsp1_rep	CDS	14910163	14910264	.	-	0	Parent=Os12t0443800-03
Chr12	irgsp1_rep	CDS	14909980	14910082	.	-	0	Parent=Os12t0443800-03
Chr12	irgsp1_rep	CDS	14909615	14909698	.	-	2	Parent=Os12t0443800-03
Chr12	irgsp1_rep	CDS	14909450	14909545	.	-	2	Parent=Os12t0443800-03
Chr12	irgsp1_rep	CDS	14909228	14909355	.	-	2	Parent=Os12t0443800-03
Chr12	irgsp1_rep	CDS	14908940	14909041	.	-	0	Parent=Os12t0443800-03
Chr12	irgsp1_rep	three_prime_UTR	14908920	14908939	.	-	.	Parent=Os12t0443800-03
Chr12	irgsp1_rep	three_prime_UTR	14907829	14908325	.	-	.	Parent=Os12t0443800-03
Chr12	irgsp1_rep	mRNA	14963353	14965045	.	-	.	ID=Os12t0444500-01;Name=Os12t0444500-01;Locus_id=Os12g0444500;Note=EGF-like region%2C conserved site domain containing protein.;Transcript_evidence=AK060955 (DDBJ%2C Best hit);ORF_evidence=B8BPH0 (UniProt);NIAS_FLcDNA=006-201-G09;Expression=AK060955;TENOR=Os12t0444500-01;KEGG=Os12t0444500-01
Chr12	irgsp1_rep	five_prime_UTR	14964452	14965045	.	-	.	Parent=Os12t0444500-01
Chr12	irgsp1_rep	five_prime_UTR	14963662	14963675	.	-	.	Parent=Os12t0444500-01
Chr12	irgsp1_rep	CDS	14963395	14963661	.	-	0	Parent=Os12t0444500-01
Chr12	irgsp1_rep	three_prime_UTR	14963353	14963394	.	-	.	Parent=Os12t0444500-01
Chr12	irgsp1_rep	mRNA	14974988	14977605	.	+	.	ID=Os12t0444800-00;Name=Os12t0444800-00;Locus_id=Os12g0444800;Note=Similar to O-methyltransferase ZRP4.;Transcript_evidence=AK248887 (DDBJ);ORF_evidence=NP_001105689.1 (RefSeq);GO=Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: O-methyltransferase activity (GO:0008171),Molecular Function: protein dimerization activity (GO:0046983);InterPro=O-methyltransferase%2C family 2 (IPR001077),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Plant methyltransferase dimerisation (IPR012967);TENOR=Os12t0444800-00;KEGG=Os12t0444800-00
Chr12	irgsp1_rep	CDS	14974988	14975797	.	+	0	Parent=Os12t0444800-00
Chr12	irgsp1_rep	CDS	14977263	14977280	.	+	0	Parent=Os12t0444800-00
Chr12	irgsp1_rep	three_prime_UTR	14977281	14977605	.	+	.	Parent=Os12t0444800-00
Chr12	irgsp1_rep	mRNA	15006146	15011459	.	+	.	ID=Os12t0445300-00;Name=Os12t0445300-00;Locus_id=Os12g0445300;Note=Winged helix repressor DNA-binding domain containing protein.;Transcript_evidence=FP096422 (DDBJ);ORF_evidence=Q2QRZ6 (UniProt);GO=Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: O-methyltransferase activity (GO:0008171),Molecular Function: protein dimerization activity (GO:0046983);InterPro=O-methyltransferase%2C family 2 (IPR001077),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Plant methyltransferase dimerisation (IPR012967),O-methyltransferase%2C COMT%2C eukaryota (IPR016461);TENOR=Os12t0445300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	15006146	15006296	.	+	.	Parent=Os12t0445300-00
Chr12	irgsp1_rep	CDS	15006297	15007004	.	+	0	Parent=Os12t0445300-00
Chr12	irgsp1_rep	CDS	15011127	15011426	.	+	0	Parent=Os12t0445300-00
Chr12	irgsp1_rep	three_prime_UTR	15011427	15011459	.	+	.	Parent=Os12t0445300-00
Chr12	irgsp1_rep	mRNA	15112817	15113552	.	+	.	ID=Os12t0446300-00;Name=Os12t0446300-00;Locus_id=Os12g0446300;Note=Similar to J013000G08%2C full insert sequence.;Transcript_evidence=AK376345 (DDBJ);ORF_evidence=B7EA40 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-HAND 2 (IPR018249);TENOR=Os12t0446300-00
Chr12	irgsp1_rep	five_prime_UTR	15112817	15112860	.	+	.	Parent=Os12t0446300-00
Chr12	irgsp1_rep	CDS	15112861	15113025	.	+	0	Parent=Os12t0446300-00
Chr12	irgsp1_rep	CDS	15113316	15113552	.	+	0	Parent=Os12t0446300-00
Chr12	irgsp1_rep	mRNA	15121175	15124503	.	+	.	ID=Os12t0446500-00;Name=Os12t0446500-00;Locus_id=Os12g0446500;Oryzabase Gene Name Synonym(s)=Metallopeptidase family M24 containing protein;Note=Peptidase M24 family protein.;Transcript_evidence=BT009637 (DDBJ);ORF_evidence=Q2QRX9 (UniProt);GO=Biological Process: cellular process (GO:0009987);InterPro=Peptidase M24%2C structural domain (IPR000994),Domain of unknown function DUF1747%2C eukaryote (IPR013719),FACT complex subunit Spt16p/Cdc68p (IPR013953);Oryzabase=22536;TENOR=Os12t0446500-00;KEGG=Os12t0446500-00
Chr12	irgsp1_rep	CDS	15121175	15124384	.	+	0	Parent=Os12t0446500-00
Chr12	irgsp1_rep	three_prime_UTR	15124385	15124503	.	+	.	Parent=Os12t0446500-00
Chr12	irgsp1_rep	mRNA	15127532	15129908	.	-	.	ID=Os12t0446700-01;Name=Os12t0446700-01;Locus_id=Os12g0446700;Note=Protein of unknown function DUF1649 family protein.;Transcript_evidence=AK071147 (DDBJ%2C Best hit);ORF_evidence=B9GCZ2 (UniProt);InterPro=Autophagy-related protein 1010 (IPR012445);NIAS_FLcDNA=J023081J09;Expression=AK071147;TENOR=Os12t0446700-01;KEGG=Os12t0446700-01
Chr12	irgsp1_rep	five_prime_UTR	15129756	15129908	.	-	.	Parent=Os12t0446700-01
Chr12	irgsp1_rep	CDS	15129723	15129755	.	-	0	Parent=Os12t0446700-01
Chr12	irgsp1_rep	CDS	15129532	15129568	.	-	0	Parent=Os12t0446700-01
Chr12	irgsp1_rep	CDS	15128781	15128866	.	-	2	Parent=Os12t0446700-01
Chr12	irgsp1_rep	CDS	15128512	15128607	.	-	0	Parent=Os12t0446700-01
Chr12	irgsp1_rep	CDS	15128265	15128424	.	-	0	Parent=Os12t0446700-01
Chr12	irgsp1_rep	CDS	15128015	15128168	.	-	2	Parent=Os12t0446700-01
Chr12	irgsp1_rep	CDS	15127896	15127899	.	-	1	Parent=Os12t0446700-01
Chr12	irgsp1_rep	three_prime_UTR	15127532	15127895	.	-	.	Parent=Os12t0446700-01
Chr12	irgsp1_rep	mRNA	15130136	15140357	.	+	.	ID=Os12t0446900-01;Name=Os12t0446900-01;Locus_id=Os12g0446900;Note=Similar to bifunctional dihydrofolate reductase-thymidylate synthase.;Transcript_evidence=AK243181 (DDBJ%2C Best hit);ORF_evidence=B9GCZ3 (UniProt);GO=Biological Process: dTMP biosynthetic process (GO:0006231),Biological Process: glycine biosynthetic process (GO:0006545),Biological Process: one-carbon metabolic process (GO:0006730),Biological Process: nucleotide biosynthetic process (GO:0009165),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: dihydrofolate reductase activity (GO:0004146),Molecular Function: thymidylate synthase activity (GO:0004799),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Thymidylate synthase (IPR000398),Dihydrofolate reductase domain (IPR001796),Bifunctional dihydrofolate reductase/thymidylate synthase (IPR012262),Dihydrofolate reductase conserved site (IPR017925),Thymidylate synthase%2C active site (IPR020940),Thymidylate synthase/dCMP hydroxymethylase domain (IPR023451),Dihydrofolate reductase-like domain (IPR024072);NIAS_FLcDNA=J100037K11;TENOR=Os12t0446900-01;KEGG=Os12t0446900-01 (EC:2.1.1.45)
Chr12	irgsp1_rep	five_prime_UTR	15130136	15130260	.	+	.	Parent=Os12t0446900-01
Chr12	irgsp1_rep	five_prime_UTR	15134209	15134325	.	+	.	Parent=Os12t0446900-01
Chr12	irgsp1_rep	CDS	15134326	15134735	.	+	0	Parent=Os12t0446900-01
Chr12	irgsp1_rep	CDS	15134837	15135236	.	+	1	Parent=Os12t0446900-01
Chr12	irgsp1_rep	CDS	15135314	15135358	.	+	0	Parent=Os12t0446900-01
Chr12	irgsp1_rep	CDS	15136196	15136261	.	+	0	Parent=Os12t0446900-01
Chr12	irgsp1_rep	CDS	15137519	15137580	.	+	0	Parent=Os12t0446900-01
Chr12	irgsp1_rep	CDS	15137663	15137737	.	+	1	Parent=Os12t0446900-01
Chr12	irgsp1_rep	CDS	15137851	15138016	.	+	1	Parent=Os12t0446900-01
Chr12	irgsp1_rep	CDS	15139074	15139197	.	+	0	Parent=Os12t0446900-01
Chr12	irgsp1_rep	CDS	15139867	15139973	.	+	2	Parent=Os12t0446900-01
Chr12	irgsp1_rep	CDS	15140085	15140195	.	+	0	Parent=Os12t0446900-01
Chr12	irgsp1_rep	three_prime_UTR	15140196	15140357	.	+	.	Parent=Os12t0446900-01
Chr12	irgsp1_rep	mRNA	15133169	15133610	.	-	.	ID=Os12t0447000-01;Name=Os12t0447000-01;Locus_id=Os12g0447000;Note=Non-protein coding transcript.;Transcript_evidence=AK120357 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013067C21;TENOR=Os12t0447000-01
Chr12	irgsp1_rep	exon	15133169	15133610	.	-	.	Parent=Os12t0447000-01
Chr12	irgsp1_rep	mRNA	15196678	15197070	.	+	.	ID=Os12t0447310-00;Name=Os12t0447310-00;Locus_id=Os12g0447310;Note=Hypothetical protein.;Transcript_evidence=AK372466 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0447310-00
Chr12	irgsp1_rep	CDS	15196678	15197070	.	+	0	Parent=Os12t0447310-00
Chr12	irgsp1_rep	mRNA	15262097	15262959	.	+	.	ID=Os12t0447466-00;Name=Os12t0447466-00;Locus_id=Os12g0447466;Note=Hypothetical conserved gene.;Transcript_evidence=CT835591 (DDBJ%2C Best hit);ORF_evidence=C5NNN9 (UniProt);TENOR=Os12t0447466-00;KEGG=Os12t0447466-00
Chr12	irgsp1_rep	five_prime_UTR	15262097	15262213	.	+	.	Parent=Os12t0447466-00
Chr12	irgsp1_rep	CDS	15262214	15262552	.	+	0	Parent=Os12t0447466-00
Chr12	irgsp1_rep	three_prime_UTR	15262553	15262959	.	+	.	Parent=Os12t0447466-00
Chr12	irgsp1_rep	mRNA	15262567	15268325	.	-	.	ID=Os12t0447932-01;Name=Os12t0447932-01;Locus_id=Os12g0447932;Note=Conserved hypothetical protein.;Transcript_evidence=AK289004 (DDBJ%2C Best hit);ORF_evidence=C5NNP1 (UniProt);NIAS_FLcDNA=J090088N21;TENOR=Os12t0447932-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	15264602	15268325	.	-	.	Parent=Os12t0447932-01
Chr12	irgsp1_rep	CDS	15264104	15264601	.	-	0	Parent=Os12t0447932-01
Chr12	irgsp1_rep	three_prime_UTR	15262567	15264103	.	-	.	Parent=Os12t0447932-01
Chr12	irgsp1_rep	mRNA	15284375	15284934	.	-	.	ID=Os12t0448400-01;Name=Os12t0448400-01;Locus_id=Os12g0448400;Note=Hypothetical protein.;Transcript_evidence=AK062371 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-102-A07;TENOR=Os12t0448400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	15284918	15284934	.	-	.	Parent=Os12t0448400-01
Chr12	irgsp1_rep	CDS	15284531	15284917	.	-	0	Parent=Os12t0448400-01
Chr12	irgsp1_rep	three_prime_UTR	15284375	15284530	.	-	.	Parent=Os12t0448400-01
Chr12	irgsp1_rep	mRNA	15316001	15316708	.	-	.	ID=Os12t0448650-00;Name=Os12t0448650-00;Locus_id=Os12g0448650;Note=Similar to AIR12.;Transcript_evidence=BT068794 (DDBJ);ORF_evidence=B6UBU0 (UniProt);InterPro=Uncharacterised conserved protein UCP037471 (IPR017214);TENOR=Os12t0448650-00
Chr12	irgsp1_rep	CDS	15316001	15316708	.	-	0	Parent=Os12t0448650-00
Chr12	irgsp1_rep	mRNA	15330237	15340502	.	-	.	ID=Os12t0448900-01;Name=Os12t0448900-01;Locus_id=Os12g0448900;RAP-DB Gene Symbol Synonym(s)=PIOX%2C RalphaO;RAP-DB Gene Name Synonym(s)=Pathogen-inducible oxygenase%2C fatty acid alpha-oxygenase%2C alpha-oxygenase%2C Rice alpha-oxygenase%2C rice fatty acid alpha-(di)oxygenase;Oryzabase Gene Symbol Synonym(s)=PIOX%2C OsPIOX%2C RalphaO;Oryzabase Gene Name Synonym(s)=Pathogen-inducible oxygenase%2C fatty acid alpha-oxygenase%2C alpha-oxygenase%2C Rice alpha-oxygenase%2C rice fatty acid alpha-(di)oxygenase;Note=Fatty acid alpha-dioxygenase family%2C Enzyme that oxygenates fatty acids into 2R-hydroperoxides;Transcript_evidence=AF229813 (Genbank),AK100592 (Genbank);ORF_evidence=Q9M5J1 (UniProt),Q2QRV3 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Haem peroxidase%2C animal (IPR002007),Haem peroxidase (IPR010255);NIAS_FLcDNA=J023106K06;Manual Curation=July 30%2C 2009;Literature_PMID=11909851,18596034;Oryzabase=12552;Expression=AK100592;TENOR=Os12t0448900-01;KEGG=Os12t0448900-01 (EC:1.-.-.-)
Chr12	irgsp1_rep	five_prime_UTR	15340376	15340502	.	-	.	Parent=Os12t0448900-01
Chr12	irgsp1_rep	five_prime_UTR	15336741	15336742	.	-	.	Parent=Os12t0448900-01
Chr12	irgsp1_rep	CDS	15336651	15336740	.	-	0	Parent=Os12t0448900-01
Chr12	irgsp1_rep	CDS	15335581	15335844	.	-	0	Parent=Os12t0448900-01
Chr12	irgsp1_rep	CDS	15334675	15334824	.	-	0	Parent=Os12t0448900-01
Chr12	irgsp1_rep	CDS	15334099	15334232	.	-	0	Parent=Os12t0448900-01
Chr12	irgsp1_rep	CDS	15333709	15333922	.	-	1	Parent=Os12t0448900-01
Chr12	irgsp1_rep	CDS	15333363	15333508	.	-	0	Parent=Os12t0448900-01
Chr12	irgsp1_rep	CDS	15332964	15333191	.	-	1	Parent=Os12t0448900-01
Chr12	irgsp1_rep	CDS	15331724	15331926	.	-	1	Parent=Os12t0448900-01
Chr12	irgsp1_rep	CDS	15330993	15331236	.	-	2	Parent=Os12t0448900-01
Chr12	irgsp1_rep	CDS	15330503	15330686	.	-	1	Parent=Os12t0448900-01
Chr12	irgsp1_rep	three_prime_UTR	15330237	15330502	.	-	.	Parent=Os12t0448900-01
Chr12	irgsp1_rep	mRNA	15461853	15463265	.	-	.	ID=Os12t0450300-00;Name=Os12t0450300-00;Locus_id=Os12g0450300;Note=Similar to Eukaryotic aspartyl protease family protein%2C expressed.;Transcript_evidence=AK360266 (DDBJ);ORF_evidence=Q2QRT5 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);TENOR=Os12t0450300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	15461856	15463265	.	-	0	Parent=Os12t0450300-00
Chr12	irgsp1_rep	three_prime_UTR	15461853	15461855	.	-	.	Parent=Os12t0450300-00
Chr12	irgsp1_rep	mRNA	15472945	15475350	.	-	.	ID=Os12t0450500-01;Name=Os12t0450500-01;Locus_id=Os12g0450500;Note=Hypothetical conserved gene.;Transcript_evidence=AK068778 (DDBJ%2C Best hit);ORF_evidence=GeneMark;InterPro=Transposase%2C Ptta/En/Spm%2C plant (IPR004252);NIAS_FLcDNA=J013158F09;TENOR=Os12t0450500-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	15474978	15475350	.	-	.	Parent=Os12t0450500-01
Chr12	irgsp1_rep	five_prime_UTR	15474781	15474865	.	-	.	Parent=Os12t0450500-01
Chr12	irgsp1_rep	five_prime_UTR	15474387	15474476	.	-	.	Parent=Os12t0450500-01
Chr12	irgsp1_rep	CDS	15474324	15474386	.	-	0	Parent=Os12t0450500-01
Chr12	irgsp1_rep	CDS	15474125	15474232	.	-	0	Parent=Os12t0450500-01
Chr12	irgsp1_rep	CDS	15473976	15474035	.	-	0	Parent=Os12t0450500-01
Chr12	irgsp1_rep	three_prime_UTR	15473966	15473975	.	-	.	Parent=Os12t0450500-01
Chr12	irgsp1_rep	three_prime_UTR	15473739	15473814	.	-	.	Parent=Os12t0450500-01
Chr12	irgsp1_rep	three_prime_UTR	15472945	15473272	.	-	.	Parent=Os12t0450500-01
Chr12	irgsp1_rep	mRNA	15477873	15478486	.	+	.	ID=Os12t0450900-01;Name=Os12t0450900-01;Locus_id=Os12g0450900;Note=Non-protein coding transcript.;Transcript_evidence=AK288473 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090037O20;TENOR=Os12t0450900-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	exon	15477873	15478486	.	+	.	Parent=Os12t0450900-01
Chr12	irgsp1_rep	mRNA	15498809	15499781	.	-	.	ID=Os12t0451300-00;Name=Os12t0451300-00;Locus_id=Os12g0451300;Note=Hypothetical conserved gene.;Transcript_evidence=CT837603 (DDBJ%2C Best hit);ORF_evidence=Q2QRT0 (UniProt);TENOR=Os12t0451300-00;KEGG=Os12t0451300-00
Chr12	irgsp1_rep	five_prime_UTR	15499643	15499781	.	-	.	Parent=Os12t0451300-00
Chr12	irgsp1_rep	CDS	15499001	15499642	.	-	0	Parent=Os12t0451300-00
Chr12	irgsp1_rep	three_prime_UTR	15498809	15499000	.	-	.	Parent=Os12t0451300-00
Chr12	irgsp1_rep	mRNA	15639469	15640442	.	+	.	ID=Os12t0453500-01;Name=Os12t0453500-01;Locus_id=Os12g0453500;Note=Conserved hypothetical protein.;Transcript_evidence=AK060141 (DDBJ%2C Best hit);ORF_evidence=Q2QRT0 (UniProt);NIAS_FLcDNA=006-309-G07;Expression=AK060141;TENOR=Os12t0453500-01;KEGG=Os12t0453500-01
Chr12	irgsp1_rep	five_prime_UTR	15639469	15639627	.	+	.	Parent=Os12t0453500-01
Chr12	irgsp1_rep	CDS	15639628	15640263	.	+	0	Parent=Os12t0453500-01
Chr12	irgsp1_rep	three_prime_UTR	15640264	15640442	.	+	.	Parent=Os12t0453500-01
Chr12	irgsp1_rep	mRNA	15758649	15760484	.	+	.	ID=Os12t0454600-00;Name=Os12t0454600-00;Locus_id=Os12g0454600;CGSNL Gene Symbol=ENODL24;CGSNL Gene Name=EARLY NODULIN LIKE PROTEIN 24;Oryzabase Gene Symbol Synonym(s)=OsENODL24;Oryzabase Gene Name Synonym(s)=early nodulin-like protein 24;Note=Cupredoxin domain containing protein.;Transcript_evidence=CT835529 (DDBJ%2C Best hit);ORF_evidence=Q2QRP3 (UniProt);GO=Molecular Function: copper ion binding (GO:0005507),Molecular Function: electron carrier activity (GO:0009055);InterPro=Plastocyanin-like (IPR003245),Cupredoxin (IPR008972);Oryzabase=9749;TENOR=Os12t0454600-00;KEGG=Os12t0454600-00
Chr12	irgsp1_rep	five_prime_UTR	15758649	15758688	.	+	.	Parent=Os12t0454600-00
Chr12	irgsp1_rep	CDS	15758689	15758923	.	+	0	Parent=Os12t0454600-00
Chr12	irgsp1_rep	CDS	15759924	15760393	.	+	2	Parent=Os12t0454600-00
Chr12	irgsp1_rep	three_prime_UTR	15760394	15760484	.	+	.	Parent=Os12t0454600-00
Chr12	irgsp1_rep	mRNA	15759920	15760383	.	-	.	ID=Os12t0454701-00;Name=Os12t0454701-00;Locus_id=Os12g0454701;Note=Hypothetical gene.;Transcript_evidence=EU948436 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0454701-00;KEGG=Os12t0454701-00
Chr12	irgsp1_rep	five_prime_UTR	15760382	15760383	.	-	.	Parent=Os12t0454701-00
Chr12	irgsp1_rep	CDS	15759920	15760381	.	-	0	Parent=Os12t0454701-00
Chr12	irgsp1_rep	mRNA	15776462	15779912	.	+	.	ID=Os12t0454800-01;Name=Os12t0454800-01;Locus_id=Os12g0454800;RAP-DB Gene Symbol Synonym(s)=CRL4%2C CHARK%2C S/T kinase%2C OsCRL4%2C OsHKL1%2C OsCDP;RAP-DB Gene Name Synonym(s)=CHASE DOMAIN RECEPTOR-LIKE SERINE/THREONINE KINASE%2C CHASE domain receptor-like serine/threonine kinase%2C CHASE domain protein;CGSNL Gene Symbol=CRL4;CGSNL Gene Name=CHASE DOMAIN RECEPTOR-LIKE SERINE/THREONINE KINASE;Oryzabase Gene Symbol Synonym(s)=CHARK%2C S/T kinase%2C OsCRL4%2C OsHKL1%2C OsCDP;Oryzabase Gene Name Synonym(s)=CHASE domain receptor-like serine/threonine kinase%2C CHASE domain protein;Note=Receptor-like serine/threonine kinase%2C Cytokinin signaling;Transcript_evidence=AK122032 (Genbank);ORF_evidence=Q2QRN7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),CHASE (IPR006189),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J033112G09;Manual Curation=September 14%2C 2009;Literature_PMID=16919402;Oryzabase=8123;Expression=AK122032;TENOR=Os12t0454800-01;KEGG=Os12t0454800-01
Chr12	irgsp1_rep	five_prime_UTR	15776462	15776688	.	+	.	Parent=Os12t0454800-01
Chr12	irgsp1_rep	CDS	15776689	15779535	.	+	0	Parent=Os12t0454800-01
Chr12	irgsp1_rep	three_prime_UTR	15779536	15779912	.	+	.	Parent=Os12t0454800-01
Chr12	irgsp1_rep	mRNA	15788561	15789140	.	+	.	ID=Os12t0455000-01;Name=Os12t0455000-01;Locus_id=Os12g0455000;CGSNL Gene Symbol=THI34;CGSNL Gene Name=THIONIN 34;Oryzabase Gene Symbol Synonym(s)=OsTHI34%2C OsTHION34%2C THION34;Oryzabase Gene Name Synonym(s)=Thionin 34;Note=Proteinase inhibitor I1%2C Kazal domain containing protein.;Transcript_evidence=AK111239 (DDBJ%2C Best hit);ORF_evidence=B8BPH9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Proteinase inhibitor I1%2C Kazal (IPR002350);NIAS_FLcDNA=002-180-C10;Oryzabase=19273;Expression=AK111239;TENOR=Os12t0455000-01;KEGG=Os12t0455000-01
Chr12	irgsp1_rep	five_prime_UTR	15788561	15788621	.	+	.	Parent=Os12t0455000-01
Chr12	irgsp1_rep	CDS	15788622	15788897	.	+	0	Parent=Os12t0455000-01
Chr12	irgsp1_rep	three_prime_UTR	15788898	15789140	.	+	.	Parent=Os12t0455000-01
Chr12	irgsp1_rep	mRNA	15791403	15791929	.	-	.	ID=Os12t0455100-01;Name=Os12t0455100-01;Locus_id=Os12g0455100;Note=Hypothetical protein.;Transcript_evidence=AK062420 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-102-G05;Expression=AK062420;TENOR=Os12t0455100-01;KEGG=Os12t0455100-01
Chr12	irgsp1_rep	five_prime_UTR	15791841	15791929	.	-	.	Parent=Os12t0455100-01
Chr12	irgsp1_rep	CDS	15791574	15791840	.	-	0	Parent=Os12t0455100-01
Chr12	irgsp1_rep	three_prime_UTR	15791403	15791573	.	-	.	Parent=Os12t0455100-01
Chr12	irgsp1_rep	mRNA	15839919	15840629	.	-	.	ID=Os12t0456000-00;Name=Os12t0456000-00;Locus_id=Os12g0456000;Note=Similar to Delta3%2C5-delta2%2C4-dienoyl-CoA isomerase.;Transcript_evidence=EU968301 (DDBJ);ORF_evidence=B6TTI6 (UniProt);TENOR=Os12t0456000-00;KEGG=Os12t0456000-00
Chr12	irgsp1_rep	CDS	15839919	15840629	.	-	0	Parent=Os12t0456000-00
Chr12	irgsp1_rep	mRNA	15842439	15845828	.	+	.	ID=Os12t0456100-00;Name=Os12t0456100-00;Locus_id=Os12g0456100;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001066728.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);TENOR=Os12t0456100-00;KEGG=Os12t0456100-00
Chr12	irgsp1_rep	CDS	15842439	15845069	.	+	0	Parent=Os12t0456100-00
Chr12	irgsp1_rep	CDS	15845166	15845828	.	+	0	Parent=Os12t0456100-00
Chr12	irgsp1_rep	mRNA	15848621	15851558	.	-	.	ID=Os12t0456200-01;Name=Os12t0456200-01;Locus_id=Os12g0456200;CGSNL Gene Symbol=ISC26;CGSNL Gene Name=IRON-SULFUR CLUSTER PROTEIN 26;Oryzabase Gene Symbol Synonym(s)=OsDjC80%2C OsISC26;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C80%2C Iron-sulfur cluster protein 26;Note=Heat shock cognate protein B%2C C-terminal oligomerisation domain containing protein.;Transcript_evidence=AK069528 (DDBJ%2C Best hit);ORF_evidence=NP_196259.2 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: chaperone binding (GO:0051087);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Co-chaperone Hsc20 (IPR004640),Heat shock cognate protein B%2C C-terminal oligomerisation (IPR009073);NIAS_FLcDNA=J023020P09;Oryzabase=12237;Expression=AK069528;TENOR=Os12t0456200-01;KEGG=Os12t0456200-01
Chr12	irgsp1_rep	five_prime_UTR	15851412	15851558	.	-	.	Parent=Os12t0456200-01
Chr12	irgsp1_rep	CDS	15851089	15851411	.	-	0	Parent=Os12t0456200-01
Chr12	irgsp1_rep	CDS	15849952	15850048	.	-	1	Parent=Os12t0456200-01
Chr12	irgsp1_rep	CDS	15849770	15849859	.	-	0	Parent=Os12t0456200-01
Chr12	irgsp1_rep	CDS	15849477	15849542	.	-	0	Parent=Os12t0456200-01
Chr12	irgsp1_rep	CDS	15849227	15849295	.	-	0	Parent=Os12t0456200-01
Chr12	irgsp1_rep	CDS	15848997	15849134	.	-	0	Parent=Os12t0456200-01
Chr12	irgsp1_rep	three_prime_UTR	15848621	15848996	.	-	.	Parent=Os12t0456200-01
Chr12	irgsp1_rep	mRNA	15856309	15857103	.	-	.	ID=Os12t0456300-00;Name=Os12t0456300-00;Locus_id=Os12g0456300;Note=Conserved hypothetical protein.;Transcript_evidence=AK361551 (DDBJ);ORF_evidence=Q2QRM3 (UniProt);TENOR=Os12t0456300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	15856699	15857103	.	-	0	Parent=Os12t0456300-00
Chr12	irgsp1_rep	three_prime_UTR	15856309	15856698	.	-	.	Parent=Os12t0456300-00
Chr12	irgsp1_rep	mRNA	15865302	15866555	.	+	.	ID=Os12t0456400-01;Name=Os12t0456400-01;Locus_id=Os12g0456400;Note=Conserved hypothetical protein.;Transcript_evidence=AK241269 (DDBJ%2C Best hit);ORF_evidence=NP_001066730.2 (RefSeq);NIAS_FLcDNA=J065132F23;TENOR=Os12t0456400-01;KEGG=Os12t0456400-01
Chr12	irgsp1_rep	five_prime_UTR	15865302	15865368	.	+	.	Parent=Os12t0456400-01
Chr12	irgsp1_rep	CDS	15865369	15866253	.	+	0	Parent=Os12t0456400-01
Chr12	irgsp1_rep	three_prime_UTR	15866254	15866555	.	+	.	Parent=Os12t0456400-01
Chr12	irgsp1_rep	mRNA	15894622	15897704	.	-	.	ID=Os12t0456700-01;Name=Os12t0456700-01;Locus_id=Os12g0456700;CGSNL Gene Symbol=GDPD;CGSNL Gene Name=GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE;Oryzabase Gene Symbol Synonym(s)=OsGdpD%2C GdpD;Oryzabase Gene Name Synonym(s)=Glycerophosphoryl diester phosphodiesterase;Note=PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain domain containing protein.;Transcript_evidence=AK119478 (DDBJ%2C Best hit);ORF_evidence=B8BPI0 (UniProt);GO=Biological Process: glycerol metabolic process (GO:0006071),Biological Process: lipid metabolic process (GO:0006629),Molecular Function: phosphoric diester hydrolase activity (GO:0008081),Molecular Function: glycerophosphodiester phosphodiesterase activity (GO:0008889);InterPro=Glycerophosphoryl diester phosphodiesterase (IPR004129),PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain (IPR017946);NIAS_FLcDNA=001-134-B10;Oryzabase=20295;Expression=AK119478;TENOR=Os12t0456700-01;KEGG=Os12t0456700-01
Chr12	irgsp1_rep	CDS	15897605	15897704	.	-	0	Parent=Os12t0456700-01
Chr12	irgsp1_rep	CDS	15896987	15897028	.	-	2	Parent=Os12t0456700-01
Chr12	irgsp1_rep	CDS	15896594	15896878	.	-	2	Parent=Os12t0456700-01
Chr12	irgsp1_rep	CDS	15896234	15896367	.	-	2	Parent=Os12t0456700-01
Chr12	irgsp1_rep	CDS	15895519	15896020	.	-	0	Parent=Os12t0456700-01
Chr12	irgsp1_rep	CDS	15894784	15895091	.	-	2	Parent=Os12t0456700-01
Chr12	irgsp1_rep	three_prime_UTR	15894622	15894783	.	-	.	Parent=Os12t0456700-01
Chr12	irgsp1_rep	mRNA	15894901	15898992	.	+	.	ID=Os12t0456783-00;Name=Os12t0456783-00;Locus_id=Os12g0456783;Note=Non-protein coding transcript.;Transcript_evidence=tplb0061g09 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os12t0456783-00
Chr12	irgsp1_rep	exon	15894901	15895084	.	+	.	Parent=Os12t0456783-00
Chr12	irgsp1_rep	exon	15895510	15896021	.	+	.	Parent=Os12t0456783-00
Chr12	irgsp1_rep	exon	15896236	15896357	.	+	.	Parent=Os12t0456783-00
Chr12	irgsp1_rep	exon	15896585	15896896	.	+	.	Parent=Os12t0456783-00
Chr12	irgsp1_rep	exon	15897583	15898086	.	+	.	Parent=Os12t0456783-00
Chr12	irgsp1_rep	exon	15898213	15898362	.	+	.	Parent=Os12t0456783-00
Chr12	irgsp1_rep	exon	15898713	15898992	.	+	.	Parent=Os12t0456783-00
Chr12	irgsp1_rep	mRNA	15961646	15962272	.	+	.	ID=Os12t0457200-01;Name=Os12t0457200-01;Locus_id=Os12g0457200;Note=Hypothetical conserved gene.;Transcript_evidence=AK121392 (DDBJ%2C Best hit);ORF_evidence=Q2QRL2 (UniProt);NIAS_FLcDNA=J023129J15;Expression=AK121392;TENOR=Os12t0457200-01;KEGG=Os12t0457200-01
Chr12	irgsp1_rep	CDS	15961646	15961912	.	+	0	Parent=Os12t0457200-01
Chr12	irgsp1_rep	three_prime_UTR	15961913	15962272	.	+	.	Parent=Os12t0457200-01
Chr12	irgsp1_rep	mRNA	15965963	15968591	.	+	.	ID=Os12t0457500-01;Name=Os12t0457500-01;Locus_id=Os12g0457500;Note=Conserved hypothetical protein.;Transcript_evidence=AK073212 (DDBJ%2C Best hit);ORF_evidence=B8AVH1 (UniProt);NIAS_FLcDNA=J033003M09;Expression=AK073212;TENOR=Os12t0457500-01;KEGG=Os12t0457500-01
Chr12	irgsp1_rep	five_prime_UTR	15965963	15965980	.	+	.	Parent=Os12t0457500-01
Chr12	irgsp1_rep	CDS	15965981	15966376	.	+	0	Parent=Os12t0457500-01
Chr12	irgsp1_rep	CDS	15966471	15966500	.	+	0	Parent=Os12t0457500-01
Chr12	irgsp1_rep	three_prime_UTR	15966501	15968591	.	+	.	Parent=Os12t0457500-01
Chr12	irgsp1_rep	mRNA	15998272	16005479	.	-	.	ID=Os12t0458100-01;Name=Os12t0458100-01;Locus_id=Os12g0458100;Oryzabase Gene Symbol Synonym(s)=HSR201;Oryzabase Gene Name Synonym(s)=Hypersensitive-related protein 201%2C spermidine hydroxycinnamoyl transferase;Note=Transferase family protein.;Transcript_evidence=AK065433 (DDBJ%2C Best hit);ORF_evidence=Q2QRK9 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);NIAS_FLcDNA=J013024J06;Oryzabase=11672;Expression=AK065433;TENOR=Os12t0458100-01;KEGG=Os12t0458100-01
Chr12	irgsp1_rep	five_prime_UTR	16005359	16005479	.	-	.	Parent=Os12t0458100-01
Chr12	irgsp1_rep	CDS	16004918	16005358	.	-	0	Parent=Os12t0458100-01
Chr12	irgsp1_rep	CDS	15998635	15999534	.	-	0	Parent=Os12t0458100-01
Chr12	irgsp1_rep	three_prime_UTR	15998272	15998634	.	-	.	Parent=Os12t0458100-01
Chr12	irgsp1_rep	mRNA	16061381	16061987	.	+	.	ID=Os12t0458900-01;Name=Os12t0458900-01;Locus_id=Os12g0458900;Note=Conserved hypothetical protein.;Transcript_evidence=AK062722 (DDBJ%2C Best hit);ORF_evidence=NP_001065435.1 (RefSeq);NIAS_FLcDNA=001-106-D05;Expression=AK062722;TENOR=Os12t0458900-01;KEGG=Os12t0458900-01
Chr12	irgsp1_rep	five_prime_UTR	16061381	16061381	.	+	.	Parent=Os12t0458900-01
Chr12	irgsp1_rep	CDS	16061382	16061840	.	+	0	Parent=Os12t0458900-01
Chr12	irgsp1_rep	three_prime_UTR	16061841	16061987	.	+	.	Parent=Os12t0458900-01
Chr12	irgsp1_rep	mRNA	16079745	16082151	.	-	.	ID=Os12t0459100-00;Name=Os12t0459100-00;Locus_id=Os12g0459100;Note=Similar to Transferase family protein.;Transcript_evidence=BT040862 (DDBJ);ORF_evidence=Q2QRJ6 (UniProt);GO=Molecular Function: transferase activity%2C transferring acyl groups other than amino-acyl groups (GO:0016747);InterPro=Transferase (IPR003480),Chloramphenicol acetyltransferase-like domain (IPR023213);TENOR=Os12t0459100-00;KEGG=Os12t0459100-00
Chr12	irgsp1_rep	CDS	16081606	16082151	.	-	0	Parent=Os12t0459100-00
Chr12	irgsp1_rep	CDS	16079745	16080665	.	-	0	Parent=Os12t0459100-00
Chr12	irgsp1_rep	mRNA	16092309	16102733	.	+	.	ID=Os12t0459300-01;Name=Os12t0459300-01;Locus_id=Os12g0459300;Note=Nucleic acid-binding%2C OB-fold domain containing protein.;Transcript_evidence=AK064837 (DDBJ%2C Best hit);ORF_evidence=Q5JMT3 (UniProt);InterPro=Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=J013000F22;Expression=AK064837;TENOR=Os12t0459300-01;KEGG=Os12t0459300-01
Chr12	irgsp1_rep	five_prime_UTR	16092309	16093448	.	+	.	Parent=Os12t0459300-01
Chr12	irgsp1_rep	five_prime_UTR	16093564	16093654	.	+	.	Parent=Os12t0459300-01
Chr12	irgsp1_rep	five_prime_UTR	16093748	16093871	.	+	.	Parent=Os12t0459300-01
Chr12	irgsp1_rep	five_prime_UTR	16099512	16099662	.	+	.	Parent=Os12t0459300-01
Chr12	irgsp1_rep	five_prime_UTR	16099759	16100032	.	+	.	Parent=Os12t0459300-01
Chr12	irgsp1_rep	five_prime_UTR	16100121	16100216	.	+	.	Parent=Os12t0459300-01
Chr12	irgsp1_rep	CDS	16100217	16100223	.	+	0	Parent=Os12t0459300-01
Chr12	irgsp1_rep	CDS	16100391	16100516	.	+	2	Parent=Os12t0459300-01
Chr12	irgsp1_rep	CDS	16100604	16100682	.	+	2	Parent=Os12t0459300-01
Chr12	irgsp1_rep	CDS	16100790	16100928	.	+	1	Parent=Os12t0459300-01
Chr12	irgsp1_rep	three_prime_UTR	16100929	16101147	.	+	.	Parent=Os12t0459300-01
Chr12	irgsp1_rep	three_prime_UTR	16101234	16101801	.	+	.	Parent=Os12t0459300-01
Chr12	irgsp1_rep	three_prime_UTR	16101888	16101977	.	+	.	Parent=Os12t0459300-01
Chr12	irgsp1_rep	three_prime_UTR	16102044	16102123	.	+	.	Parent=Os12t0459300-01
Chr12	irgsp1_rep	three_prime_UTR	16102215	16102295	.	+	.	Parent=Os12t0459300-01
Chr12	irgsp1_rep	three_prime_UTR	16102405	16102733	.	+	.	Parent=Os12t0459300-01
Chr12	irgsp1_rep	mRNA	16092318	16092865	.	+	.	ID=Os12t0459300-02;Name=Os12t0459300-02;Locus_id=Os12g0459300;Note=Hypothetical gene.;Transcript_evidence=AK105224 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-110-G05;Expression=AK105224;TENOR=Os12t0459300-02;KEGG=Os12t0459300-02
Chr12	irgsp1_rep	five_prime_UTR	16092318	16092415	.	+	.	Parent=Os12t0459300-02
Chr12	irgsp1_rep	CDS	16092416	16092784	.	+	0	Parent=Os12t0459300-02
Chr12	irgsp1_rep	three_prime_UTR	16092785	16092865	.	+	.	Parent=Os12t0459300-02
Chr12	irgsp1_rep	mRNA	16092447	16101732	.	+	.	ID=Os12t0459300-03;Name=Os12t0459300-03;Locus_id=Os12g0459300;Note=Nucleic acid-binding%2C OB-fold domain containing protein.;Transcript_evidence=AK068420 (DDBJ%2C Best hit);ORF_evidence=Q01M88 (UniProt);InterPro=Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);NIAS_FLcDNA=J013152C24;Expression=AK068420;TENOR=Os12t0459300-03;KEGG=Os12t0459300-03
Chr12	irgsp1_rep	five_prime_UTR	16092447	16092659	.	+	.	Parent=Os12t0459300-03
Chr12	irgsp1_rep	five_prime_UTR	16093561	16093654	.	+	.	Parent=Os12t0459300-03
Chr12	irgsp1_rep	five_prime_UTR	16093748	16093871	.	+	.	Parent=Os12t0459300-03
Chr12	irgsp1_rep	five_prime_UTR	16099512	16099662	.	+	.	Parent=Os12t0459300-03
Chr12	irgsp1_rep	five_prime_UTR	16099759	16100032	.	+	.	Parent=Os12t0459300-03
Chr12	irgsp1_rep	five_prime_UTR	16100121	16100216	.	+	.	Parent=Os12t0459300-03
Chr12	irgsp1_rep	CDS	16100217	16100223	.	+	0	Parent=Os12t0459300-03
Chr12	irgsp1_rep	CDS	16100391	16100516	.	+	2	Parent=Os12t0459300-03
Chr12	irgsp1_rep	CDS	16100604	16100682	.	+	2	Parent=Os12t0459300-03
Chr12	irgsp1_rep	CDS	16100790	16100928	.	+	1	Parent=Os12t0459300-03
Chr12	irgsp1_rep	three_prime_UTR	16100929	16101147	.	+	.	Parent=Os12t0459300-03
Chr12	irgsp1_rep	three_prime_UTR	16101234	16101732	.	+	.	Parent=Os12t0459300-03
Chr12	irgsp1_rep	mRNA	16144947	16146126	.	+	.	ID=Os12t0460100-01;Name=Os12t0460100-01;Locus_id=Os12g0460100;Note=Protein of unknown function DUF761%2C plant domain containing protein.;Transcript_evidence=AK068042 (DDBJ%2C Best hit);ORF_evidence=A3BJU1 (UniProt);InterPro=Protein of unknown function DUF761%2C plant (IPR008480);NIAS_FLcDNA=J013132H03;Expression=AK068042;TENOR=Os12t0460100-01;KEGG=Os12t0460100-01
Chr12	irgsp1_rep	five_prime_UTR	16144947	16145047	.	+	.	Parent=Os12t0460100-01
Chr12	irgsp1_rep	CDS	16145048	16145743	.	+	0	Parent=Os12t0460100-01
Chr12	irgsp1_rep	three_prime_UTR	16145744	16146126	.	+	.	Parent=Os12t0460100-01
Chr12	irgsp1_rep	mRNA	16167905	16168600	.	+	.	ID=Os12t0460400-00;Name=Os12t0460400-00;Locus_id=Os12g0460400;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QRI4 (UniProt);InterPro=Protein of unknown function DUF761%2C plant (IPR008480);TENOR=Os12t0460400-00;KEGG=Os12t0460400-00
Chr12	irgsp1_rep	CDS	16167905	16168600	.	+	0	Parent=Os12t0460400-00
Chr12	irgsp1_rep	mRNA	16172091	16172147	.	+	.	ID=Os12t0460600-00;Name=Os12t0460600-00;Locus_id=Os12g0460600;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0460600-00
Chr12	irgsp1_rep	exon	16172091	16172147	.	+	.	Parent=Os12t0460600-00
Chr12	irgsp1_rep	mRNA	16196141	16199480	.	-	.	ID=Os12t0460800-01;Name=Os12t0460800-01;Locus_id=Os12g0460800;RAP-DB Gene Symbol Synonym(s)=OsDR11%2C OsDR11S%2C OsDR11L%2C OsAFC2%2C AFC2;RAP-DB Gene Name Synonym(s)=serine/threonin-protein kinase AFC2;Oryzabase Gene Symbol Synonym(s)=OsAFC2%2C AFC2%2C OsDR11%2C DR11%2C OsDR11L%2C OsDR11S;Oryzabase Gene Name Synonym(s)=serine/threonin-protein kinase AFC2;Note=LAMMER kinase-type protein%2C Positive regulator of disease resistance;Transcript_evidence=AK066287;ORF_evidence=A0A0P0YA82;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719);NIAS_FLcDNA=J013064I06;Manual Curation=November 9%2C 2016;Literature_PMID=27621422;Oryzabase=20293;TENOR=Os12t0460800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	16199360	16199480	.	-	.	Parent=Os12t0460800-01
Chr12	irgsp1_rep	CDS	16199261	16199359	.	-	0	Parent=Os12t0460800-01
Chr12	irgsp1_rep	CDS	16198437	16198599	.	-	0	Parent=Os12t0460800-01
Chr12	irgsp1_rep	CDS	16198301	16198327	.	-	2	Parent=Os12t0460800-01
Chr12	irgsp1_rep	CDS	16198027	16198180	.	-	2	Parent=Os12t0460800-01
Chr12	irgsp1_rep	CDS	16197183	16197252	.	-	1	Parent=Os12t0460800-01
Chr12	irgsp1_rep	three_prime_UTR	16197096	16197182	.	-	.	Parent=Os12t0460800-01
Chr12	irgsp1_rep	three_prime_UTR	16196945	16197009	.	-	.	Parent=Os12t0460800-01
Chr12	irgsp1_rep	three_prime_UTR	16196768	16196865	.	-	.	Parent=Os12t0460800-01
Chr12	irgsp1_rep	three_prime_UTR	16196570	16196672	.	-	.	Parent=Os12t0460800-01
Chr12	irgsp1_rep	three_prime_UTR	16196141	16196488	.	-	.	Parent=Os12t0460800-01
Chr12	irgsp1_rep	mRNA	16196201	16199451	.	-	.	ID=Os12t0460800-02;Name=Os12t0460800-02;Locus_id=Os12g0460800;Oryzabase Gene Symbol Synonym(s)=OsAFC2%2C AFC2%2C OsDR11%2C DR11%2C OsDR11L%2C OsDR11S;Oryzabase Gene Name Synonym(s)=serine/threonin-protein kinase AFC2;Note=Similar to Lammer-type protein kinase.;Transcript_evidence=AK104229 (DDBJ%2C Best hit);ORF_evidence=A7XW60 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=006-307-D03;Oryzabase=20293;TENOR=Os12t0460800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	16199360	16199451	.	-	.	Parent=Os12t0460800-02
Chr12	irgsp1_rep	CDS	16199261	16199359	.	-	0	Parent=Os12t0460800-02
Chr12	irgsp1_rep	CDS	16198437	16198599	.	-	0	Parent=Os12t0460800-02
Chr12	irgsp1_rep	CDS	16198301	16198327	.	-	2	Parent=Os12t0460800-02
Chr12	irgsp1_rep	CDS	16198027	16198180	.	-	2	Parent=Os12t0460800-02
Chr12	irgsp1_rep	CDS	16197183	16197252	.	-	1	Parent=Os12t0460800-02
Chr12	irgsp1_rep	three_prime_UTR	16197096	16197182	.	-	.	Parent=Os12t0460800-02
Chr12	irgsp1_rep	three_prime_UTR	16196945	16197009	.	-	.	Parent=Os12t0460800-02
Chr12	irgsp1_rep	three_prime_UTR	16196768	16196865	.	-	.	Parent=Os12t0460800-02
Chr12	irgsp1_rep	three_prime_UTR	16196570	16196672	.	-	.	Parent=Os12t0460800-02
Chr12	irgsp1_rep	three_prime_UTR	16196201	16196488	.	-	.	Parent=Os12t0460800-02
Chr12	irgsp1_rep	mRNA	16196141	16197247	.	-	.	ID=Os12t0460800-03;Name=Os12t0460800-03;Locus_id=Os12g0460800;Oryzabase Gene Symbol Synonym(s)=OsAFC2%2C AFC2%2C OsDR11%2C DR11%2C OsDR11L%2C OsDR11S;Oryzabase Gene Name Synonym(s)=serine/threonin-protein kinase AFC2;Note=Similar to Lammer-type protein kinase.;Transcript_evidence=AK061708 (DDBJ%2C Best hit);ORF_evidence=A7XW60 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-037-F11;Oryzabase=20293;Expression=AK061708;TENOR=Os12t0460800-03;KEGG=Os12t0460800-03 (EC:2.7.12.1)
Chr12	irgsp1_rep	five_prime_UTR	16197247	16197247	.	-	.	Parent=Os12t0460800-03
Chr12	irgsp1_rep	CDS	16197096	16197246	.	-	0	Parent=Os12t0460800-03
Chr12	irgsp1_rep	CDS	16196945	16197009	.	-	2	Parent=Os12t0460800-03
Chr12	irgsp1_rep	CDS	16196768	16196865	.	-	0	Parent=Os12t0460800-03
Chr12	irgsp1_rep	CDS	16196570	16196672	.	-	1	Parent=Os12t0460800-03
Chr12	irgsp1_rep	CDS	16196339	16196488	.	-	0	Parent=Os12t0460800-03
Chr12	irgsp1_rep	three_prime_UTR	16196141	16196338	.	-	.	Parent=Os12t0460800-03
Chr12	irgsp1_rep	mRNA	16273918	16274583	.	+	.	ID=Os12t0461050-00;Name=Os12t0461050-00;Locus_id=Os12g0461050;Note=Similar to Phenylalanine ammonia-lyase.;Transcript_evidence=EU948175 (DDBJ);ORF_evidence=A2XVK3 (UniProt);InterPro=Phenylalanine ammonia-lyase%2C shielding domain (IPR023144);TENOR=Os12t0461050-00
Chr12	irgsp1_rep	CDS	16273918	16274583	.	+	0	Parent=Os12t0461050-00
Chr12	irgsp1_rep	mRNA	16274616	16275535	.	-	.	ID=Os12t0461300-00;Name=Os12t0461300-00;Locus_id=Os12g0461300;Note=Similar to Phenylalanine ammonia-lyase.;Transcript_evidence=L11883 (DDBJ);ORF_evidence=A2XVK3 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=L-Aspartase-like (IPR008948),Phenylalanine ammonia-lyase%2C shielding domain (IPR023144);TENOR=Os12t0461300-00;KEGG=Os12t0461300-00 (EC:4.3.1.24)
Chr12	irgsp1_rep	CDS	16274774	16275535	.	-	0	Parent=Os12t0461300-00
Chr12	irgsp1_rep	three_prime_UTR	16274616	16274773	.	-	.	Parent=Os12t0461300-00
Chr12	irgsp1_rep	mRNA	16294397	16294444	.	+	.	ID=Os12t0462000-00;Name=Os12t0462000-00;Locus_id=Os12g0462000;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0462000-00
Chr12	irgsp1_rep	exon	16294397	16294444	.	+	.	Parent=Os12t0462000-00
Chr12	irgsp1_rep	mRNA	16331308	16331717	.	+	.	ID=Os12t0462700-00;Name=Os12t0462700-00;Locus_id=Os12g0462700;Note=Similar to POT family domain containing protein%2C expressed.;Transcript_evidence=FP096379 (DDBJ);ORF_evidence=D8L9H8 (UniProt);InterPro=Protein of unknown function DUF538 (IPR007493);TENOR=Os12t0462700-00
Chr12	irgsp1_rep	five_prime_UTR	16331308	16331366	.	+	.	Parent=Os12t0462700-00
Chr12	irgsp1_rep	CDS	16331367	16331717	.	+	0	Parent=Os12t0462700-00
Chr12	irgsp1_rep	mRNA	16391425	16392971	.	+	.	ID=Os12t0464300-01;Name=Os12t0464300-01;Locus_id=Os12g0464300;Oryzabase Gene Symbol Synonym(s)=OsFbox650%2C Os_F0568;Oryzabase Gene Name Synonym(s)=F-box protein 650;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK109841 (DDBJ%2C Best hit);ORF_evidence=Q2QRF0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810);NIAS_FLcDNA=002-148-E01;Oryzabase=17410;Expression=AK109841;TENOR=Os12t0464300-01;KEGG=Os12t0464300-01
Chr12	irgsp1_rep	five_prime_UTR	16391425	16391488	.	+	.	Parent=Os12t0464300-01
Chr12	irgsp1_rep	CDS	16391489	16392880	.	+	0	Parent=Os12t0464300-01
Chr12	irgsp1_rep	three_prime_UTR	16392881	16392971	.	+	.	Parent=Os12t0464300-01
Chr12	irgsp1_rep	mRNA	16398248	16400772	.	+	.	ID=Os12t0464400-01;Name=Os12t0464400-01;Locus_id=Os12g0464400;Oryzabase Gene Symbol Synonym(s)=OsEnS-150%2C OsDR%2C DR;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 150%2C Dehydrogenase/reductase;Note=Similar to Oxidoreductase%2C short chain dehydrogenase/reductase family protein%2C expressed.;Transcript_evidence=AK121922 (DDBJ%2C Best hit);ORF_evidence=Q2QRE6 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J033106F11;Oryzabase=18433;TENOR=Os12t0464400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	16398248	16398380	.	+	.	Parent=Os12t0464400-01
Chr12	irgsp1_rep	CDS	16398381	16398566	.	+	0	Parent=Os12t0464400-01
Chr12	irgsp1_rep	CDS	16398962	16399154	.	+	0	Parent=Os12t0464400-01
Chr12	irgsp1_rep	CDS	16399246	16399331	.	+	2	Parent=Os12t0464400-01
Chr12	irgsp1_rep	CDS	16399431	16399562	.	+	0	Parent=Os12t0464400-01
Chr12	irgsp1_rep	CDS	16399646	16399810	.	+	0	Parent=Os12t0464400-01
Chr12	irgsp1_rep	CDS	16400266	16400553	.	+	0	Parent=Os12t0464400-01
Chr12	irgsp1_rep	three_prime_UTR	16400554	16400772	.	+	.	Parent=Os12t0464400-01
Chr12	irgsp1_rep	mRNA	16463056	16463951	.	+	.	ID=Os12t0465000-00;Name=Os12t0465000-00;Locus_id=Os12g0465000;Oryzabase Gene Symbol Synonym(s)=UNP2;Note=Hypothetical conserved gene.;Transcript_evidence=CT835554 (DDBJ%2C Best hit);ORF_evidence=Q2QRD6 (UniProt);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Glycosyl transferase%2C family 31 (IPR002659);Oryzabase=16802;TENOR=Os12t0465000-00;KEGG=Os12t0465000-00
Chr12	irgsp1_rep	five_prime_UTR	16463056	16463072	.	+	.	Parent=Os12t0465000-00
Chr12	irgsp1_rep	CDS	16463073	16463139	.	+	0	Parent=Os12t0465000-00
Chr12	irgsp1_rep	CDS	16463472	16463788	.	+	2	Parent=Os12t0465000-00
Chr12	irgsp1_rep	three_prime_UTR	16463789	16463951	.	+	.	Parent=Os12t0465000-00
Chr12	irgsp1_rep	mRNA	16469122	16469853	.	+	.	ID=Os12t0465100-01;Name=Os12t0465100-01;Locus_id=Os12g0465100;Note=Glycosyl transferase%2C family 31 protein.;Transcript_evidence=AK288029 (DDBJ%2C Best hit);ORF_evidence=NP_001066741.1 (RefSeq);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Glycosyl transferase%2C family 31 (IPR002659);NIAS_FLcDNA=J075133J15;TENOR=Os12t0465100-01;KEGG=Os12t0465100-01
Chr12	irgsp1_rep	five_prime_UTR	16469122	16469207	.	+	.	Parent=Os12t0465100-01
Chr12	irgsp1_rep	CDS	16469208	16469271	.	+	0	Parent=Os12t0465100-01
Chr12	irgsp1_rep	CDS	16469437	16469753	.	+	2	Parent=Os12t0465100-01
Chr12	irgsp1_rep	three_prime_UTR	16469754	16469853	.	+	.	Parent=Os12t0465100-01
Chr12	irgsp1_rep	mRNA	16404344	16404815	.	-	.	ID=Os12t0465600-01;Name=Os12t0465600-01;Locus_id=Os12g0465600;Note=Hypothetical conserved gene.;Transcript_evidence=AK242360 (DDBJ%2C Best hit);ORF_evidence=B9FZL8 (UniProt);NIAS_FLcDNA=J080026D03;TENOR=Os12t0465600-01;KEGG=Os12t0465600-01
Chr12	irgsp1_rep	five_prime_UTR	16404815	16404815	.	-	.	Parent=Os12t0465600-01
Chr12	irgsp1_rep	CDS	16404707	16404814	.	-	0	Parent=Os12t0465600-01
Chr12	irgsp1_rep	three_prime_UTR	16404702	16404706	.	-	.	Parent=Os12t0465600-01
Chr12	irgsp1_rep	three_prime_UTR	16404344	16404608	.	-	.	Parent=Os12t0465600-01
Chr12	irgsp1_rep	mRNA	16500219	16504887	.	-	.	ID=Os12t0465700-01;Name=Os12t0465700-01;Locus_id=Os12g0465700;RAP-DB Gene Symbol Synonym(s)=DEC%2C dec*%2C dec;RAP-DB Gene Name Synonym(s)=DECUSSATE%2C decussate (phyllotactic abnormality)%2C decussate;Oryzabase Gene Symbol Synonym(s)=DEC;Oryzabase Gene Name Synonym(s)=DECUSSATE;Note=Plant-specific protein containing a glutamine-rich region and a conserved motif%2C Controls of phyllotaxy by affecting cytokinin signaling;Transcript_evidence=AB683949 (Taichung 65%2C 3bp deletion in CDS),AK242239;ORF_evidence=G5ENJ7;NIAS_FLcDNA=J075179B08;Manual Curation=March 3%2C 2015;Literature_PMID=22889403;Oryzabase=17977;TENOR=Os12t0465700-01;KEGG=Os12t0465700-01
Chr12	irgsp1_rep	five_prime_UTR	16504860	16504887	.	-	.	Parent=Os12t0465700-01
Chr12	irgsp1_rep	CDS	16504213	16504859	.	-	0	Parent=Os12t0465700-01
Chr12	irgsp1_rep	CDS	16500518	16501130	.	-	1	Parent=Os12t0465700-01
Chr12	irgsp1_rep	three_prime_UTR	16500219	16500517	.	-	.	Parent=Os12t0465700-01
Chr12	irgsp1_rep	mRNA	16506143	16507816	.	-	.	ID=Os12t0465800-00;Name=Os12t0465800-00;Locus_id=Os12g0465800;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=A3CH68 (UniProt);TENOR=Os12t0465800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	16507311	16507816	.	-	0	Parent=Os12t0465800-00
Chr12	irgsp1_rep	CDS	16506143	16506182	.	-	1	Parent=Os12t0465800-00
Chr12	irgsp1_rep	mRNA	16519753	16520222	.	+	.	ID=Os12t0466200-01;Name=Os12t0466200-01;Locus_id=Os12g0466200;Note=Conserved hypothetical protein.;Transcript_evidence=AK242394 (DDBJ%2C Best hit);ORF_evidence=NP_001176940.1 (RefSeq);NIAS_FLcDNA=J080064H06;TENOR=Os12t0466200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	16519753	16519754	.	+	.	Parent=Os12t0466200-01
Chr12	irgsp1_rep	CDS	16519755	16520207	.	+	0	Parent=Os12t0466200-01
Chr12	irgsp1_rep	three_prime_UTR	16520208	16520222	.	+	.	Parent=Os12t0466200-01
Chr12	irgsp1_rep	mRNA	16565027	16565942	.	-	.	ID=Os12t0466800-01;Name=Os12t0466800-01;Locus_id=Os12g0466800;Note=Hypothetical protein.;Transcript_evidence=AK070991 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023077I08;Expression=AK070991;TENOR=Os12t0466800-01;KEGG=Os12t0466800-01
Chr12	irgsp1_rep	five_prime_UTR	16565910	16565942	.	-	.	Parent=Os12t0466800-01
Chr12	irgsp1_rep	CDS	16565511	16565909	.	-	0	Parent=Os12t0466800-01
Chr12	irgsp1_rep	three_prime_UTR	16565027	16565510	.	-	.	Parent=Os12t0466800-01
Chr12	irgsp1_rep	mRNA	16582692	16585353	.	+	.	ID=Os12t0467200-01;Name=Os12t0467200-01;Locus_id=Os12g0467200;Note=Protein of unknown function DUF1677%2C Oryza sativa family protein.;Transcript_evidence=AK107289 (DDBJ%2C Best hit);ORF_evidence=A2ZKB6 (UniProt);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);NIAS_FLcDNA=002-126-B09;Expression=AK107289;TENOR=Os12t0467200-01;KEGG=Os12t0467200-01
Chr12	irgsp1_rep	five_prime_UTR	16582692	16582881	.	+	.	Parent=Os12t0467200-01
Chr12	irgsp1_rep	five_prime_UTR	16583199	16583260	.	+	.	Parent=Os12t0467200-01
Chr12	irgsp1_rep	five_prime_UTR	16583381	16583741	.	+	.	Parent=Os12t0467200-01
Chr12	irgsp1_rep	CDS	16583742	16584968	.	+	0	Parent=Os12t0467200-01
Chr12	irgsp1_rep	three_prime_UTR	16584969	16585353	.	+	.	Parent=Os12t0467200-01
Chr12	irgsp1_rep	mRNA	16589263	16595997	.	-	.	ID=Os12t0467300-01;Name=Os12t0467300-01;Locus_id=Os12g0467300;Note=NB-ARC domain containing protein.;Transcript_evidence=AK101496 (DDBJ%2C Best hit);ORF_evidence=B9GD26 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J033043F22;Expression=AK101496;TENOR=Os12t0467300-01;KEGG=Os12t0467300-01
Chr12	irgsp1_rep	five_prime_UTR	16595083	16595997	.	-	.	Parent=Os12t0467300-01
Chr12	irgsp1_rep	five_prime_UTR	16594933	16594988	.	-	.	Parent=Os12t0467300-01
Chr12	irgsp1_rep	CDS	16594121	16594932	.	-	0	Parent=Os12t0467300-01
Chr12	irgsp1_rep	CDS	16590710	16592741	.	-	1	Parent=Os12t0467300-01
Chr12	irgsp1_rep	three_prime_UTR	16590679	16590709	.	-	.	Parent=Os12t0467300-01
Chr12	irgsp1_rep	three_prime_UTR	16589263	16589757	.	-	.	Parent=Os12t0467300-01
Chr12	irgsp1_rep	mRNA	16598434	16599501	.	+	.	ID=Os12t0467450-00;Name=Os12t0467450-00;Locus_id=Os12g0467450;Note=Similar to OSIGBa0110B10.2 protein.;Transcript_evidence=EU973161 (DDBJ);ORF_evidence=Q01KQ6 (UniProt);TENOR=Os12t0467450-00
Chr12	irgsp1_rep	five_prime_UTR	16598434	16598507	.	+	.	Parent=Os12t0467450-00
Chr12	irgsp1_rep	CDS	16598508	16598918	.	+	0	Parent=Os12t0467450-00
Chr12	irgsp1_rep	three_prime_UTR	16598919	16599501	.	+	.	Parent=Os12t0467450-00
Chr12	irgsp1_rep	mRNA	16616740	16618664	.	+	.	ID=Os12t0467700-01;Name=Os12t0467700-01;Locus_id=Os12g0467700;Note=ATPase%2C AAA-type%2C core domain containing protein.;Transcript_evidence=AK071141 (DDBJ%2C Best hit);ORF_evidence=Q5URW9 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959);NIAS_FLcDNA=J023082D02;Expression=AK071141;TENOR=Os12t0467700-01;KEGG=Os12t0467700-01
Chr12	irgsp1_rep	five_prime_UTR	16616740	16616848	.	+	.	Parent=Os12t0467700-01
Chr12	irgsp1_rep	CDS	16616849	16618381	.	+	0	Parent=Os12t0467700-01
Chr12	irgsp1_rep	three_prime_UTR	16618382	16618664	.	+	.	Parent=Os12t0467700-01
Chr12	irgsp1_rep	mRNA	16617430	16618561	.	+	.	ID=Os12t0467700-02;Name=Os12t0467700-02;Locus_id=Os12g0467700;Note=Similar to ATPase 2.;Transcript_evidence=AK059718 (DDBJ%2C Best hit);ORF_evidence=Q5URW9 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959);NIAS_FLcDNA=001-032-G07;TENOR=Os12t0467700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	16617430	16617430	.	+	.	Parent=Os12t0467700-02
Chr12	irgsp1_rep	CDS	16617431	16618381	.	+	0	Parent=Os12t0467700-02
Chr12	irgsp1_rep	three_prime_UTR	16618382	16618561	.	+	.	Parent=Os12t0467700-02
Chr12	irgsp1_rep	mRNA	16640709	16642633	.	+	.	ID=Os12t0468000-01;Name=Os12t0468000-01;Locus_id=Os12g0468000;CGSNL Gene Name=AAA-ATPASE 5;Oryzabase Gene Name Synonym(s)=OsAAA-ATPase5%2C OsAAA-ATPase 5%2C AAA-ATPase5;Note=ATPase%2C AAA-type%2C core domain containing protein.;Transcript_evidence=AK071141 (DDBJ%2C Best hit);ORF_evidence=Q5URW9 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959);NIAS_FLcDNA=J023082D02;Oryzabase=23150;Expression=AK071141;TENOR=Os12t0468000-01;KEGG=Os12t0468000-01
Chr12	irgsp1_rep	five_prime_UTR	16640709	16640817	.	+	.	Parent=Os12t0468000-01
Chr12	irgsp1_rep	CDS	16640818	16642350	.	+	0	Parent=Os12t0468000-01
Chr12	irgsp1_rep	three_prime_UTR	16642351	16642633	.	+	.	Parent=Os12t0468000-01
Chr12	irgsp1_rep	mRNA	16641399	16642530	.	+	.	ID=Os12t0468000-02;Name=Os12t0468000-02;Locus_id=Os12g0468000;CGSNL Gene Name=AAA-ATPASE 5;Oryzabase Gene Name Synonym(s)=OsAAA-ATPase5%2C OsAAA-ATPase 5%2C AAA-ATPase5;Note=Similar to ATPase 2.;Transcript_evidence=AK059718 (DDBJ%2C Best hit);ORF_evidence=Q5URW9 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959);NIAS_FLcDNA=001-032-G07;Oryzabase=23150;TENOR=Os12t0468000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	16641399	16641399	.	+	.	Parent=Os12t0468000-02
Chr12	irgsp1_rep	CDS	16641400	16642350	.	+	0	Parent=Os12t0468000-02
Chr12	irgsp1_rep	three_prime_UTR	16642351	16642530	.	+	.	Parent=Os12t0468000-02
Chr12	irgsp1_rep	mRNA	16686982	16687801	.	-	.	ID=Os12t0468300-00;Name=Os12t0468300-00;Locus_id=Os12g0468300;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QRA4 (UniProt);Oryzabase=14960;TENOR=Os12t0468300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	16687581	16687801	.	-	0	Parent=Os12t0468300-00
Chr12	irgsp1_rep	CDS	16686982	16687516	.	-	1	Parent=Os12t0468300-00
Chr12	irgsp1_rep	mRNA	16702529	16707209	.	+	.	ID=Os12t0468500-01;Name=Os12t0468500-01;Locus_id=Os12g0468500;CGSNL Gene Symbol=CNGC17;CGSNL Gene Name=CYCLIC NUCLEOTIDE GATED CHANNEL 17;Oryzabase Gene Symbol Synonym(s)=OsCNGC17%2C OsCNGC5%2C OsSTA282;Oryzabase Gene Name Synonym(s)=Cyclic nucleotide gated channel 17%2C Cyclic nucleotide-gated ion channel 5;Note=Similar to predicted protein.;Transcript_evidence=AK240644 (DDBJ%2C Best hit);ORF_evidence=NP_173051.1 (RefSeq);GO=Biological Process: ion transport (GO:0006811),Biological Process: potassium ion transport (GO:0006813),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: ion channel activity (GO:0005216),Molecular Function: voltage-gated potassium channel activity (GO:0005249),Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048),Cyclic nucleotide-binding domain (IPR000595),Potassium channel%2C voltage-dependent%2C EAG/ELK/ERG (IPR003938),Ion transport (IPR005821),RmlC-like jelly roll fold (IPR014710),Cyclic nucleotide-binding-like (IPR018490);Oryzabase=15490;TENOR=Os12t0468500-01;KEGG=Os12t0468500-01
Chr12	irgsp1_rep	five_prime_UTR	16702529	16702714	.	+	.	Parent=Os12t0468500-01
Chr12	irgsp1_rep	CDS	16702715	16703593	.	+	0	Parent=Os12t0468500-01
Chr12	irgsp1_rep	CDS	16704177	16704707	.	+	0	Parent=Os12t0468500-01
Chr12	irgsp1_rep	CDS	16705719	16706531	.	+	0	Parent=Os12t0468500-01
Chr12	irgsp1_rep	three_prime_UTR	16706532	16707209	.	+	.	Parent=Os12t0468500-01
Chr12	irgsp1_rep	mRNA	16703025	16706384	.	-	.	ID=Os12t0468550-00;Name=Os12t0468550-00;Locus_id=Os12g0468550;Note=Hypothetical protein.;Transcript_evidence=tplb0024o19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0468550-00
Chr12	irgsp1_rep	five_prime_UTR	16705713	16706384	.	-	.	Parent=Os12t0468550-00
Chr12	irgsp1_rep	five_prime_UTR	16704261	16704701	.	-	.	Parent=Os12t0468550-00
Chr12	irgsp1_rep	CDS	16704225	16704260	.	-	0	Parent=Os12t0468550-00
Chr12	irgsp1_rep	CDS	16703025	16703602	.	-	0	Parent=Os12t0468550-00
Chr12	irgsp1_rep	mRNA	16706571	16712920	.	-	.	ID=Os12t0468600-01;Name=Os12t0468600-01;Locus_id=Os12g0468600;Oryzabase Gene Symbol Synonym(s)=OsAH%2C AH;Oryzabase Gene Name Synonym(s)=amidohydrolase;Note=Amidohydrolase 1 domain containing protein.;Transcript_evidence=AK100464 (DDBJ%2C Best hit);ORF_evidence=B6TJL6 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787),Molecular Function: hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds (GO:0016810);InterPro=Amidohydrolase 1 (IPR006680),Metal-dependent hydrolase%2C composite domain (IPR011059);NIAS_FLcDNA=J023092B14;Oryzabase=20292;TENOR=Os12t0468600-01
Chr12	irgsp1_rep	five_prime_UTR	16712743	16712920	.	-	.	Parent=Os12t0468600-01
Chr12	irgsp1_rep	CDS	16712532	16712742	.	-	0	Parent=Os12t0468600-01
Chr12	irgsp1_rep	CDS	16712241	16712413	.	-	2	Parent=Os12t0468600-01
Chr12	irgsp1_rep	CDS	16710869	16711027	.	-	0	Parent=Os12t0468600-01
Chr12	irgsp1_rep	CDS	16709941	16710090	.	-	0	Parent=Os12t0468600-01
Chr12	irgsp1_rep	CDS	16709261	16709404	.	-	0	Parent=Os12t0468600-01
Chr12	irgsp1_rep	CDS	16708750	16708906	.	-	0	Parent=Os12t0468600-01
Chr12	irgsp1_rep	CDS	16707947	16708119	.	-	2	Parent=Os12t0468600-01
Chr12	irgsp1_rep	CDS	16707622	16707677	.	-	0	Parent=Os12t0468600-01
Chr12	irgsp1_rep	CDS	16707251	16707353	.	-	1	Parent=Os12t0468600-01
Chr12	irgsp1_rep	CDS	16706778	16706867	.	-	0	Parent=Os12t0468600-01
Chr12	irgsp1_rep	three_prime_UTR	16706571	16706777	.	-	.	Parent=Os12t0468600-01
Chr12	irgsp1_rep	mRNA	16706568	16706790	.	-	.	ID=Os12t0468600-02;Name=Os12t0468600-02;Locus_id=Os12g0468600;Oryzabase Gene Symbol Synonym(s)=OsAH%2C AH;Oryzabase Gene Name Synonym(s)=amidohydrolase;Note=Non-protein coding transcript.;Transcript_evidence=AK060592 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-024-E06;Oryzabase=20292;TENOR=Os12t0468600-02
Chr12	irgsp1_rep	exon	16706568	16706790	.	-	.	Parent=Os12t0468600-02
Chr12	irgsp1_rep	mRNA	16706571	16712836	.	-	.	ID=Os12t0468600-03;Name=Os12t0468600-03;Locus_id=Os12g0468600;Oryzabase Gene Symbol Synonym(s)=OsAH%2C AH;Oryzabase Gene Name Synonym(s)=amidohydrolase;Note=Amidohydrolase 1 domain containing protein.;Transcript_evidence=AK060961 (DDBJ%2C Best hit);ORF_evidence=B6TJL6 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787),Molecular Function: hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds (GO:0016810);InterPro=Amidohydrolase 1 (IPR006680),Metal-dependent hydrolase%2C composite domain (IPR011059);NIAS_FLcDNA=006-202-A01;Oryzabase=20292;TENOR=Os12t0468600-03
Chr12	irgsp1_rep	five_prime_UTR	16712743	16712836	.	-	.	Parent=Os12t0468600-03
Chr12	irgsp1_rep	CDS	16712532	16712742	.	-	0	Parent=Os12t0468600-03
Chr12	irgsp1_rep	CDS	16712241	16712413	.	-	2	Parent=Os12t0468600-03
Chr12	irgsp1_rep	CDS	16710869	16711027	.	-	0	Parent=Os12t0468600-03
Chr12	irgsp1_rep	CDS	16709941	16710090	.	-	0	Parent=Os12t0468600-03
Chr12	irgsp1_rep	CDS	16709261	16709404	.	-	0	Parent=Os12t0468600-03
Chr12	irgsp1_rep	CDS	16708750	16708906	.	-	0	Parent=Os12t0468600-03
Chr12	irgsp1_rep	CDS	16707947	16708119	.	-	2	Parent=Os12t0468600-03
Chr12	irgsp1_rep	CDS	16707622	16707677	.	-	0	Parent=Os12t0468600-03
Chr12	irgsp1_rep	CDS	16707251	16707353	.	-	1	Parent=Os12t0468600-03
Chr12	irgsp1_rep	CDS	16706778	16706867	.	-	0	Parent=Os12t0468600-03
Chr12	irgsp1_rep	three_prime_UTR	16706571	16706777	.	-	.	Parent=Os12t0468600-03
Chr12	irgsp1_rep	mRNA	16815218	16815892	.	-	.	ID=Os12t0469300-00;Name=Os12t0469300-00;Locus_id=Os12g0469300;Note=Non-protein coding transcript.;Transcript_evidence=tplb0015j08 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os12t0469300-00
Chr12	irgsp1_rep	exon	16815218	16815892	.	-	.	Parent=Os12t0469300-00
Chr12	irgsp1_rep	mRNA	16852584	16853109	.	-	.	ID=Os12t0470000-00;Name=Os12t0470000-00;Locus_id=Os12g0470000;Note=Similar to Rab28 protein.;Transcript_evidence=tplb0013m03 (Wheat FLcDNA);ORF_evidence=Q41850 (UniProt);InterPro=Seed maturation protein (IPR007011);TENOR=Os12t0470000-00
Chr12	irgsp1_rep	CDS	16852711	16853109	.	-	0	Parent=Os12t0470000-00
Chr12	irgsp1_rep	three_prime_UTR	16852584	16852710	.	-	.	Parent=Os12t0470000-00
Chr12	irgsp1_rep	mRNA	16872793	16874580	.	-	.	ID=Os12t0470700-01;Name=Os12t0470700-01;Locus_id=Os12g0470700;Note=ATPase%2C AAA-type%2C core domain containing protein.;Transcript_evidence=AK242591 (DDBJ%2C Best hit);ORF_evidence=Q5URW9 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959);NIAS_FLcDNA=J090011J19;TENOR=Os12t0470700-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	16874379	16874580	.	-	.	Parent=Os12t0470700-01
Chr12	irgsp1_rep	CDS	16872957	16874378	.	-	0	Parent=Os12t0470700-01
Chr12	irgsp1_rep	three_prime_UTR	16872793	16872956	.	-	.	Parent=Os12t0470700-01
Chr12	irgsp1_rep	mRNA	16909020	16910848	.	+	.	ID=Os12t0471100-01;Name=Os12t0471100-01;Locus_id=Os12g0471100;Note=Similar to ATPase 2.;Transcript_evidence=AK069404 (DDBJ%2C Best hit);ORF_evidence=Q5URW9 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959);NIAS_FLcDNA=J023011H22;Expression=AK069404;TENOR=Os12t0471100-01;KEGG=Os12t0471100-01
Chr12	irgsp1_rep	five_prime_UTR	16909020	16909135	.	+	.	Parent=Os12t0471100-01
Chr12	irgsp1_rep	CDS	16909136	16910722	.	+	0	Parent=Os12t0471100-01
Chr12	irgsp1_rep	three_prime_UTR	16910723	16910848	.	+	.	Parent=Os12t0471100-01
Chr12	irgsp1_rep	mRNA	16964046	16965071	.	+	.	ID=Os12t0472300-00;Name=Os12t0472300-00;Locus_id=Os12g0472300;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001176947.1 (RefSeq);TENOR=Os12t0472300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	16964046	16964699	.	+	0	Parent=Os12t0472300-00
Chr12	irgsp1_rep	CDS	16964886	16965071	.	+	0	Parent=Os12t0472300-00
Chr12	irgsp1_rep	mRNA	16964627	16965366	.	-	.	ID=Os12t0472366-00;Name=Os12t0472366-00;Locus_id=Os12g0472366;Note=Hypothetical protein.;Transcript_evidence=tplb0015j08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0472366-00
Chr12	irgsp1_rep	five_prime_UTR	16965222	16965366	.	-	.	Parent=Os12t0472366-00
Chr12	irgsp1_rep	CDS	16964871	16965221	.	-	0	Parent=Os12t0472366-00
Chr12	irgsp1_rep	three_prime_UTR	16964627	16964870	.	-	.	Parent=Os12t0472366-00
Chr12	irgsp1_rep	mRNA	16988415	16990867	.	+	.	ID=Os12t0472500-01;Name=Os12t0472500-01;Locus_id=Os12g0472500;RAP-DB Gene Symbol Synonym(s)=OsTDL1A%2C MIL2;RAP-DB Gene Name Synonym(s)=TPD1-like 1A%2C MICROSPORELESS2;CGSNL Gene Symbol=MIL2;CGSNL Gene Name=MICROSPORELESS 2;Oryzabase Gene Symbol Synonym(s)=OsTDL1A%2C TDL1A%2C OsMIL2%2C OsTDL1A/MIL2%2C OsTDL1a;Oryzabase Gene Name Synonym(s)=TPD1-like 1A%2C MICROSPORELESS2%2C MICROSPORELESS 2;Note=Homolog of the Arabidopsis TAPETUM DETERMINANT1 (TPD1) protein%2C Regulation of early anther cell differentiation;Transcript_evidence=AK108523;ORF_evidence=Q2QR54;NIAS_FLcDNA=002-144-B06;Manual Curation=July 14%2C 2016;Literature_PMID=27208278,22913653,18248596;Oryzabase=21180;Expression=AK108523;TENOR=Os12t0472500-01;KEGG=Os12t0472500-01
Chr12	irgsp1_rep	five_prime_UTR	16988415	16988589	.	+	.	Parent=Os12t0472500-01
Chr12	irgsp1_rep	five_prime_UTR	16988939	16988965	.	+	.	Parent=Os12t0472500-01
Chr12	irgsp1_rep	CDS	16988966	16989098	.	+	0	Parent=Os12t0472500-01
Chr12	irgsp1_rep	CDS	16989791	16989907	.	+	2	Parent=Os12t0472500-01
Chr12	irgsp1_rep	CDS	16990270	16990700	.	+	2	Parent=Os12t0472500-01
Chr12	irgsp1_rep	three_prime_UTR	16990701	16990867	.	+	.	Parent=Os12t0472500-01
Chr12	irgsp1_rep	mRNA	17009383	17011944	.	-	.	ID=Os12t0472800-01;Name=Os12t0472800-01;Locus_id=Os12g0472800;Oryzabase Gene Symbol Synonym(s)=OsPOEI19%2C POEI19;Oryzabase Gene Name Synonym(s)=Pollen Ole e I allergen and extensin 19;Note=B repeat unit of collagen binding surface protein (cna) containing protein.;Transcript_evidence=AK063278 (DDBJ%2C Best hit);ORF_evidence=B8BPK8 (UniProt);InterPro=Pollen Ole e 1 allergen/extensin (IPR006041);NIAS_FLcDNA=001-113-C07;Oryzabase=20294;Expression=AK063278;TENOR=Os12t0472800-01;KEGG=Os12t0472800-01
Chr12	irgsp1_rep	five_prime_UTR	17011899	17011944	.	-	.	Parent=Os12t0472800-01
Chr12	irgsp1_rep	CDS	17011667	17011898	.	-	0	Parent=Os12t0472800-01
Chr12	irgsp1_rep	CDS	17009695	17010599	.	-	2	Parent=Os12t0472800-01
Chr12	irgsp1_rep	three_prime_UTR	17009383	17009694	.	-	.	Parent=Os12t0472800-01
Chr12	irgsp1_rep	mRNA	17009697	17010065	.	+	.	ID=Os12t0472900-00;Name=Os12t0472900-00;Locus_id=Os12g0472900;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os12t0472900-00
Chr12	irgsp1_rep	CDS	17009697	17010065	.	+	0	Parent=Os12t0472900-00
Chr12	irgsp1_rep	mRNA	17070764	17071549	.	+	.	ID=Os12t0473900-00;Name=Os12t0473900-00;Locus_id=Os12g0473900;CGSNL Gene Symbol=HYPRP45;CGSNL Gene Name=HYBRID PROLINE-RICH PROTEIN 45;Oryzabase Gene Symbol Synonym(s)=OsHyPRP45%2C HyPRP45;Oryzabase Gene Name Synonym(s)=Hybrid Proline-Rich Protein 45;Note=Similar to Protease inhibitor/seed storage/LTP family protein.;Transcript_evidence=CT835596 (DDBJ%2C Best hit);ORF_evidence=Q2QR41 (UniProt);GO=Biological Process: lipid transport (GO:0006869);InterPro=Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (IPR003612),Plant lipid transfer protein/hydrophobic protein%2C helical domain (IPR013770),Bifunctional inhibitor/plant lipid transfer protein/seed storage (IPR016140);Oryzabase=23421;TENOR=Os12t0473900-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	17070764	17070800	.	+	.	Parent=Os12t0473900-00
Chr12	irgsp1_rep	CDS	17070801	17071319	.	+	0	Parent=Os12t0473900-00
Chr12	irgsp1_rep	three_prime_UTR	17071320	17071549	.	+	.	Parent=Os12t0473900-00
Chr12	irgsp1_rep	mRNA	17302127	17305326	.	-	.	ID=Os12t0476200-01;Name=Os12t0476200-01;Locus_id=Os12g0476200;RAP-DB Gene Symbol Synonym(s)=SWEET13%2C OsSWEET13;RAP-DB Gene Name Synonym(s)=SWEET13;CGSNL Gene Symbol=SWEET13;CGSNL Gene Name=SWEET13;Oryzabase Gene Symbol Synonym(s)=OsSWEET13%2C Xa25(t)%2C Xa25%2C OsMtN3%2C Xa25/SWEET13%2C OsSWEET13/XA25;Oryzabase Gene Name Synonym(s)=Xanthomonas oryzae pv. oryzae resistance 25%2C Xanthomonas oryzae pv. oryzae resistance-25%2C Xanthomonas campestris pv. oryzae resistance-25%2C nodulin MtN3 family protein%2C nodulin/SWEET13;Note=Sucrose transporter%2C TAL effector PthXo2-dependent disease susceptibility to bacterial pathogen;Transcript_evidence=AK242853;ORF_evidence=Q2QR07;GO=Cellular Component: integral component of membrane (GO:0016021);InterPro=SWEET sugar transporter%2C plants (IPR018179);NIAS_FLcDNA=J090073D19;Manual Curation=May 22%2C 2015;Literature_PMID=25824104;Oryzabase=9104;TENOR=Os12t0476200-01;KEGG=Os12t0476200-01
Chr12	irgsp1_rep	five_prime_UTR	17305135	17305326	.	-	.	Parent=Os12t0476200-01
Chr12	irgsp1_rep	CDS	17305083	17305134	.	-	0	Parent=Os12t0476200-01
Chr12	irgsp1_rep	CDS	17304098	17304134	.	-	2	Parent=Os12t0476200-01
Chr12	irgsp1_rep	CDS	17303773	17303983	.	-	1	Parent=Os12t0476200-01
Chr12	irgsp1_rep	CDS	17303370	17303531	.	-	0	Parent=Os12t0476200-01
Chr12	irgsp1_rep	CDS	17303121	17303240	.	-	0	Parent=Os12t0476200-01
Chr12	irgsp1_rep	CDS	17302697	17303005	.	-	0	Parent=Os12t0476200-01
Chr12	irgsp1_rep	three_prime_UTR	17302127	17302696	.	-	.	Parent=Os12t0476200-01
Chr12	irgsp1_rep	mRNA	17364617	17367165	.	-	.	ID=Os12t0477050-01;Name=Os12t0477050-01;Locus_id=Os12g0477050;Note=Hypothetical protein.;Transcript_evidence=AK242274 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J075187H10;TENOR=Os12t0477050-01;KEGG=Os12t0477050-01
Chr12	irgsp1_rep	five_prime_UTR	17367115	17367165	.	-	.	Parent=Os12t0477050-01
Chr12	irgsp1_rep	CDS	17367011	17367114	.	-	0	Parent=Os12t0477050-01
Chr12	irgsp1_rep	CDS	17366092	17366236	.	-	1	Parent=Os12t0477050-01
Chr12	irgsp1_rep	CDS	17365402	17365518	.	-	0	Parent=Os12t0477050-01
Chr12	irgsp1_rep	three_prime_UTR	17364617	17365401	.	-	.	Parent=Os12t0477050-01
Chr12	irgsp1_rep	mRNA	17367334	17368383	.	-	.	ID=Os12t0477200-00;Name=Os12t0477200-00;Locus_id=Os12g0477200;CGSNL Gene Symbol=CESA10;CGSNL Gene Name=CELLULOSE SYNTHASE A10;Oryzabase Gene Symbol Synonym(s)=OsCesA10%2C OsCESA10;Oryzabase Gene Name Synonym(s)=Cellulose synthase A catalytic subunit 10 [UDP-forming]%2C Cellulose synthase A catalytic subunit 10;Note=Hypothetical conserved gene.;Transcript_evidence=BT085787 (DDBJ);ORF_evidence=B1P2T5 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150);Oryzabase=9059;TENOR=Os12t0477200-00;KEGG=Os12t0477200-00 (EC:2.4.1.12)
Chr12	irgsp1_rep	five_prime_UTR	17368351	17368383	.	-	.	Parent=Os12t0477200-00
Chr12	irgsp1_rep	CDS	17367334	17368350	.	-	0	Parent=Os12t0477200-00
Chr12	irgsp1_rep	mRNA	17391342	17392627	.	+	.	ID=Os12t0477400-01;Name=Os12t0477400-01;Locus_id=Os12g0477400;CGSNL Gene Symbol=NAC139;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 139;Oryzabase Gene Symbol Synonym(s)=ONAC139%2C OsNAM;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 139%2C no apical meristem;Note=No apical meristem (NAM) protein domain containing protein.;Transcript_evidence=AK243244 (DDBJ%2C Best hit);ORF_evidence=XP_002304662.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);NIAS_FLcDNA=J100046N20;Oryzabase=15898;TENOR=Os12t0477400-01;KEGG=Os12t0477400-01
Chr12	irgsp1_rep	five_prime_UTR	17391342	17391463	.	+	.	Parent=Os12t0477400-01
Chr12	irgsp1_rep	CDS	17391464	17391638	.	+	0	Parent=Os12t0477400-01
Chr12	irgsp1_rep	CDS	17391722	17392329	.	+	2	Parent=Os12t0477400-01
Chr12	irgsp1_rep	three_prime_UTR	17392330	17392627	.	+	.	Parent=Os12t0477400-01
Chr12	irgsp1_rep	mRNA	17406834	17413826	.	-	.	ID=Os12t0477600-01;Name=Os12t0477600-01;Locus_id=Os12g0477600;Note=Conserved hypothetical protein.;Transcript_evidence=AK099534 (DDBJ%2C Best hit);ORF_evidence=Q2QQZ5 (UniProt);NIAS_FLcDNA=J013031N08;TENOR=Os12t0477600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	17413600	17413826	.	-	.	Parent=Os12t0477600-01
Chr12	irgsp1_rep	five_prime_UTR	17406958	17407108	.	-	.	Parent=Os12t0477600-01
Chr12	irgsp1_rep	CDS	17406834	17406957	.	-	0	Parent=Os12t0477600-01
Chr12	irgsp1_rep	mRNA	17415790	17418550	.	-	.	ID=Os12t0477700-01;Name=Os12t0477700-01;Locus_id=Os12g0477700;Oryzabase Gene Symbol Synonym(s)=ST01;Oryzabase Gene Name Synonym(s)=Stvbi paralog%2C Stvbi paralog;Note=Conserved hypothetical protein.;Transcript_evidence=AK064139 (DDBJ%2C Best hit);ORF_evidence=Q0IND7;NIAS_FLcDNA=002-102-H12;Manual Curation=May 11%2C 2020;Oryzabase=23591,23592;TENOR=Os12t0477700-01
Chr12	irgsp1_rep	five_prime_UTR	17418412	17418550	.	-	.	Parent=Os12t0477700-01
Chr12	irgsp1_rep	CDS	17416300	17418411	.	-	0	Parent=Os12t0477700-01
Chr12	irgsp1_rep	three_prime_UTR	17416289	17416299	.	-	.	Parent=Os12t0477700-01
Chr12	irgsp1_rep	three_prime_UTR	17416095	17416195	.	-	.	Parent=Os12t0477700-01
Chr12	irgsp1_rep	three_prime_UTR	17415790	17415997	.	-	.	Parent=Os12t0477700-01
Chr12	irgsp1_rep	mRNA	17415611	17425464	.	-	.	ID=Os12t0477700-02;Name=Os12t0477700-02;Locus_id=Os12g0477700;Oryzabase Gene Symbol Synonym(s)=ST01;Oryzabase Gene Name Synonym(s)=Stvbi paralog%2C Stvbi paralog;Note=Stvb-i paralog;Transcript_evidence=Inferred from literature;ORF_evidence=Q2QQZ4;InterPro=Histidine kinase/HSP90-like ATPase superfamily (IPR036890);Manual Curation=May 11%2C 2020;Literature_PMID=32457773;Oryzabase=23591,23592
Chr12	irgsp1_rep	CDS	17425279	17425464	.	-	0	Parent=Os12t0477700-02
Chr12	irgsp1_rep	CDS	17422474	17422521	.	-	0	Parent=Os12t0477700-02
Chr12	irgsp1_rep	CDS	17421863	17422073	.	-	0	Parent=Os12t0477700-02
Chr12	irgsp1_rep	CDS	17416300	17421350	.	-	2	Parent=Os12t0477700-02
Chr12	irgsp1_rep	three_prime_UTR	17416289	17416299	.	-	.	Parent=Os12t0477700-02
Chr12	irgsp1_rep	three_prime_UTR	17416095	17416195	.	-	.	Parent=Os12t0477700-02
Chr12	irgsp1_rep	three_prime_UTR	17415611	17415997	.	-	.	Parent=Os12t0477700-02
Chr12	irgsp1_rep	mRNA	17463398	17465368	.	-	.	ID=Os12t0478200-01;Name=Os12t0478200-01;Locus_id=Os12g0478200;Oryzabase Gene Symbol Synonym(s)=OsABA45%2C ABA45%2C OsGDP%2C GDP;Oryzabase Gene Name Synonym(s)=Gram Domain Protein%2C ABA-responsive gene45%2C ABA-responsive gene 45;Note=Hypothetical protein.;Transcript_evidence=AK070901 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023073O19;Oryzabase=14748;TENOR=Os12t0478200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	17465164	17465368	.	-	0	Parent=Os12t0478200-01
Chr12	irgsp1_rep	CDS	17463629	17463648	.	-	2	Parent=Os12t0478200-01
Chr12	irgsp1_rep	three_prime_UTR	17463398	17463628	.	-	.	Parent=Os12t0478200-01
Chr12	irgsp1_rep	mRNA	17463448	17464070	.	-	.	ID=Os12t0478200-02;Name=Os12t0478200-02;Locus_id=Os12g0478200;Oryzabase Gene Symbol Synonym(s)=OsABA45%2C ABA45%2C OsGDP%2C GDP;Oryzabase Gene Name Synonym(s)=Gram Domain Protein%2C ABA-responsive gene45%2C ABA-responsive gene 45;Note=GRAM domain containing protein.;Transcript_evidence=AK063578 (DDBJ%2C Best hit);ORF_evidence=NP_001152088.1 (RefSeq);InterPro=GRAM (IPR004182);NIAS_FLcDNA=001-117-H05;Oryzabase=14748;TENOR=Os12t0478200-02;KEGG=Os12t0478200-02
Chr12	irgsp1_rep	five_prime_UTR	17464070	17464070	.	-	.	Parent=Os12t0478200-02
Chr12	irgsp1_rep	CDS	17463629	17464069	.	-	0	Parent=Os12t0478200-02
Chr12	irgsp1_rep	three_prime_UTR	17463448	17463628	.	-	.	Parent=Os12t0478200-02
Chr12	irgsp1_rep	mRNA	17478005	17486364	.	+	.	ID=Os12t0478400-00;Name=Os12t0478400-00;Locus_id=Os12g0478400;CGSNL Gene Symbol=RLCK368;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 368;Oryzabase Gene Symbol Synonym(s)=OsRLCK368%2C OsWAK%2C OsWAK125%2C WAK125;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 368%2C OsWAK receptor-like protein OsWAK-RLP;Note=EGF-type aspartate/asparagine hydroxylation site domain containing protein.;Transcript_evidence=DQ177499 (DDBJ);ORF_evidence=Q2QQY6 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515);InterPro=EGF-type aspartate/asparagine hydroxylation site (IPR000152),Epidermal growth factor-like%2C type 3 (IPR000742),EGF-like calcium-binding (IPR001881),EGF-like calcium-binding%2C conserved site (IPR018097);Oryzabase=19038;TENOR=Os12t0478400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	17478005	17478941	.	+	0	Parent=Os12t0478400-00
Chr12	irgsp1_rep	CDS	17483848	17483964	.	+	2	Parent=Os12t0478400-00
Chr12	irgsp1_rep	CDS	17485197	17485210	.	+	2	Parent=Os12t0478400-00
Chr12	irgsp1_rep	three_prime_UTR	17485211	17486364	.	+	.	Parent=Os12t0478400-00
Chr12	irgsp1_rep	mRNA	17501253	17501969	.	-	.	ID=Os12t0478766-00;Name=Os12t0478766-00;Locus_id=Os12g0478766;Note=Non-protein coding transcript.;Transcript_evidence=EU976182 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0478766-00
Chr12	irgsp1_rep	exon	17501253	17501969	.	-	.	Parent=Os12t0478766-00
Chr12	irgsp1_rep	mRNA	17514849	17515832	.	+	.	ID=Os12t0478900-00;Name=Os12t0478900-00;Locus_id=Os12g0478900;Note=Sterile alpha motif-type domain containing protein.;Transcript_evidence=EU964200 (DDBJ);ORF_evidence=NP_001149677.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Sterile alpha motif domain (IPR001660),Sterile alpha motif/pointed domain (IPR013761),Sterile alpha motif%2C type 1 (IPR021129);TENOR=Os12t0478900-00;KEGG=Os12t0478900-00
Chr12	irgsp1_rep	CDS	17514849	17515505	.	+	0	Parent=Os12t0478900-00
Chr12	irgsp1_rep	three_prime_UTR	17515506	17515832	.	+	.	Parent=Os12t0478900-00
Chr12	irgsp1_rep	mRNA	17538320	17539655	.	-	.	ID=Os12t0479100-00;Name=Os12t0479100-00;Locus_id=Os12g0479100;Note=Hypothetical conserved gene.;Transcript_evidence=EU968813 (DDBJ);ORF_evidence=B8BPM3 (UniProt);TENOR=Os12t0479100-00;KEGG=Os12t0479100-00
Chr12	irgsp1_rep	five_prime_UTR	17539628	17539655	.	-	.	Parent=Os12t0479100-00
Chr12	irgsp1_rep	CDS	17538981	17539627	.	-	0	Parent=Os12t0479100-00
Chr12	irgsp1_rep	CDS	17538833	17538883	.	-	1	Parent=Os12t0479100-00
Chr12	irgsp1_rep	CDS	17538320	17538497	.	-	1	Parent=Os12t0479100-00
Chr12	irgsp1_rep	mRNA	17538826	17539901	.	+	.	ID=Os12t0479150-00;Name=Os12t0479150-00;Locus_id=Os12g0479150;Note=Hypothetical gene.;Transcript_evidence=EU947171 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0479150-00;KEGG=Os12t0479150-00
Chr12	irgsp1_rep	five_prime_UTR	17538826	17538891	.	+	.	Parent=Os12t0479150-00
Chr12	irgsp1_rep	CDS	17538892	17539264	.	+	0	Parent=Os12t0479150-00
Chr12	irgsp1_rep	CDS	17539330	17539838	.	+	2	Parent=Os12t0479150-00
Chr12	irgsp1_rep	three_prime_UTR	17539839	17539901	.	+	.	Parent=Os12t0479150-00
Chr12	irgsp1_rep	mRNA	17563540	17565998	.	-	.	ID=Os12t0479300-01;Name=Os12t0479300-01;Locus_id=Os12g0479300;Note=Non-protein coding transcript.;Transcript_evidence=AK109886 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-149-D12;TENOR=Os12t0479300-01
Chr12	irgsp1_rep	exon	17563540	17565998	.	-	.	Parent=Os12t0479300-01
Chr12	irgsp1_rep	mRNA	17571844	17577848	.	-	.	ID=Os12t0479400-01;Name=Os12t0479400-01;Locus_id=Os12g0479400;CGSNL Gene Symbol=ARF24;CGSNL Gene Name=AUXIN RESPONSE FACTOR 24;Oryzabase Gene Symbol Synonym(s)=OsARF24;Oryzabase Gene Name Synonym(s)=auxin response factor-24%2C auxin response factor 24;Note=Similar to Auxin response factor 1.;Transcript_evidence=AK067061 (DDBJ%2C Best hit);ORF_evidence=Q2QQX6-2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: response to hormone stimulus (GO:0009725),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Transcriptional factor B3 (IPR003340),Auxin response factor (IPR010525),Aux/IAA-ARF-dimerisation (IPR011525),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=J013091D19;Oryzabase=10016;Expression=AK067061;TENOR=Os12t0479400-01;KEGG=Os12t0479400-01
Chr12	irgsp1_rep	five_prime_UTR	17577561	17577848	.	-	.	Parent=Os12t0479400-01
Chr12	irgsp1_rep	CDS	17577494	17577560	.	-	0	Parent=Os12t0479400-01
Chr12	irgsp1_rep	CDS	17577299	17577414	.	-	2	Parent=Os12t0479400-01
Chr12	irgsp1_rep	CDS	17576417	17576515	.	-	0	Parent=Os12t0479400-01
Chr12	irgsp1_rep	CDS	17576250	17576303	.	-	0	Parent=Os12t0479400-01
Chr12	irgsp1_rep	CDS	17575966	17576157	.	-	0	Parent=Os12t0479400-01
Chr12	irgsp1_rep	CDS	17575762	17575846	.	-	0	Parent=Os12t0479400-01
Chr12	irgsp1_rep	CDS	17575214	17575304	.	-	2	Parent=Os12t0479400-01
Chr12	irgsp1_rep	CDS	17574959	17575123	.	-	1	Parent=Os12t0479400-01
Chr12	irgsp1_rep	CDS	17574633	17574752	.	-	1	Parent=Os12t0479400-01
Chr12	irgsp1_rep	CDS	17574455	17574530	.	-	1	Parent=Os12t0479400-01
Chr12	irgsp1_rep	CDS	17574199	17574370	.	-	0	Parent=Os12t0479400-01
Chr12	irgsp1_rep	CDS	17573203	17574113	.	-	2	Parent=Os12t0479400-01
Chr12	irgsp1_rep	CDS	17572672	17572862	.	-	0	Parent=Os12t0479400-01
Chr12	irgsp1_rep	CDS	17572394	17572577	.	-	1	Parent=Os12t0479400-01
Chr12	irgsp1_rep	three_prime_UTR	17572377	17572393	.	-	.	Parent=Os12t0479400-01
Chr12	irgsp1_rep	three_prime_UTR	17571844	17572279	.	-	.	Parent=Os12t0479400-01
Chr12	irgsp1_rep	mRNA	17571864	17577699	.	-	.	ID=Os12t0479400-02;Name=Os12t0479400-02;Locus_id=Os12g0479400;CGSNL Gene Symbol=ARF24;CGSNL Gene Name=AUXIN RESPONSE FACTOR 24;Oryzabase Gene Symbol Synonym(s)=OsARF24;Oryzabase Gene Name Synonym(s)=auxin response factor-24%2C auxin response factor 24;Note=Similar to Auxin response factor 24.;Transcript_evidence=AK065254 (DDBJ%2C Best hit);ORF_evidence=Q2QQX6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: response to hormone stimulus (GO:0009725),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Transcriptional factor B3 (IPR003340),Auxin response factor (IPR010525),Aux/IAA-ARF-dimerisation (IPR011525),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=J013002J11;Oryzabase=10016;Expression=AK065254;TENOR=Os12t0479400-02;KEGG=Os12t0479400-02
Chr12	irgsp1_rep	five_prime_UTR	17577561	17577699	.	-	.	Parent=Os12t0479400-02
Chr12	irgsp1_rep	CDS	17577494	17577560	.	-	0	Parent=Os12t0479400-02
Chr12	irgsp1_rep	CDS	17577299	17577414	.	-	2	Parent=Os12t0479400-02
Chr12	irgsp1_rep	CDS	17576417	17576515	.	-	0	Parent=Os12t0479400-02
Chr12	irgsp1_rep	CDS	17576250	17576303	.	-	0	Parent=Os12t0479400-02
Chr12	irgsp1_rep	CDS	17575966	17576160	.	-	0	Parent=Os12t0479400-02
Chr12	irgsp1_rep	CDS	17575762	17575846	.	-	0	Parent=Os12t0479400-02
Chr12	irgsp1_rep	CDS	17575214	17575304	.	-	2	Parent=Os12t0479400-02
Chr12	irgsp1_rep	CDS	17574959	17575123	.	-	1	Parent=Os12t0479400-02
Chr12	irgsp1_rep	CDS	17574633	17574752	.	-	1	Parent=Os12t0479400-02
Chr12	irgsp1_rep	CDS	17574455	17574530	.	-	1	Parent=Os12t0479400-02
Chr12	irgsp1_rep	CDS	17574199	17574370	.	-	0	Parent=Os12t0479400-02
Chr12	irgsp1_rep	CDS	17573203	17574113	.	-	2	Parent=Os12t0479400-02
Chr12	irgsp1_rep	CDS	17572672	17572862	.	-	0	Parent=Os12t0479400-02
Chr12	irgsp1_rep	CDS	17572394	17572577	.	-	1	Parent=Os12t0479400-02
Chr12	irgsp1_rep	three_prime_UTR	17572377	17572393	.	-	.	Parent=Os12t0479400-02
Chr12	irgsp1_rep	three_prime_UTR	17571864	17572279	.	-	.	Parent=Os12t0479400-02
Chr12	irgsp1_rep	mRNA	17571864	17573954	.	-	.	ID=Os12t0479400-03;Name=Os12t0479400-03;Locus_id=Os12g0479400;CGSNL Gene Symbol=ARF24;CGSNL Gene Name=AUXIN RESPONSE FACTOR 24;Oryzabase Gene Symbol Synonym(s)=OsARF24;Oryzabase Gene Name Synonym(s)=auxin response factor-24%2C auxin response factor 24;Note=Similar to Isoform 2 of Auxin response factor 24.;Transcript_evidence=AK060796 (DDBJ%2C Best hit);ORF_evidence=Q2QQX6-2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Aux/IAA-ARF-dimerisation (IPR011525);NIAS_FLcDNA=001-033-E12;Oryzabase=10016;Expression=AK060796;TENOR=Os12t0479400-03;KEGG=Os12t0479400-03
Chr12	irgsp1_rep	five_prime_UTR	17573953	17573954	.	-	.	Parent=Os12t0479400-03
Chr12	irgsp1_rep	CDS	17573203	17573952	.	-	0	Parent=Os12t0479400-03
Chr12	irgsp1_rep	CDS	17572672	17572862	.	-	0	Parent=Os12t0479400-03
Chr12	irgsp1_rep	CDS	17572394	17572577	.	-	1	Parent=Os12t0479400-03
Chr12	irgsp1_rep	three_prime_UTR	17572377	17572393	.	-	.	Parent=Os12t0479400-03
Chr12	irgsp1_rep	three_prime_UTR	17571864	17572279	.	-	.	Parent=Os12t0479400-03
Chr12	irgsp1_rep	mRNA	17612395	17618588	.	+	.	ID=Os12t0479900-01;Name=Os12t0479900-01;Locus_id=Os12g0479900;Note=Similar to aminopeptidase.;Transcript_evidence=AK120970 (DDBJ%2C Best hit);ORF_evidence=NP_196898.5 (RefSeq);InterPro=Protein of unknown function DUF3754 (IPR022227);NIAS_FLcDNA=J023041A13;Expression=AK120970;TENOR=Os12t0479900-01;KEGG=Os12t0479900-01
Chr12	irgsp1_rep	five_prime_UTR	17612395	17612530	.	+	.	Parent=Os12t0479900-01
Chr12	irgsp1_rep	CDS	17612531	17612699	.	+	0	Parent=Os12t0479900-01
Chr12	irgsp1_rep	CDS	17613163	17613257	.	+	2	Parent=Os12t0479900-01
Chr12	irgsp1_rep	CDS	17613449	17613562	.	+	0	Parent=Os12t0479900-01
Chr12	irgsp1_rep	CDS	17614131	17614235	.	+	0	Parent=Os12t0479900-01
Chr12	irgsp1_rep	CDS	17614315	17614386	.	+	0	Parent=Os12t0479900-01
Chr12	irgsp1_rep	CDS	17614632	17614744	.	+	0	Parent=Os12t0479900-01
Chr12	irgsp1_rep	CDS	17614845	17614979	.	+	1	Parent=Os12t0479900-01
Chr12	irgsp1_rep	CDS	17615088	17615156	.	+	1	Parent=Os12t0479900-01
Chr12	irgsp1_rep	CDS	17615272	17615359	.	+	1	Parent=Os12t0479900-01
Chr12	irgsp1_rep	CDS	17615466	17615537	.	+	0	Parent=Os12t0479900-01
Chr12	irgsp1_rep	CDS	17615623	17615723	.	+	0	Parent=Os12t0479900-01
Chr12	irgsp1_rep	CDS	17615842	17615959	.	+	1	Parent=Os12t0479900-01
Chr12	irgsp1_rep	CDS	17616051	17616110	.	+	0	Parent=Os12t0479900-01
Chr12	irgsp1_rep	CDS	17616711	17616821	.	+	0	Parent=Os12t0479900-01
Chr12	irgsp1_rep	CDS	17618162	17618272	.	+	0	Parent=Os12t0479900-01
Chr12	irgsp1_rep	three_prime_UTR	17618273	17618588	.	+	.	Parent=Os12t0479900-01
Chr12	irgsp1_rep	mRNA	17619427	17623993	.	+	.	ID=Os12t0480000-01;Name=Os12t0480000-01;Locus_id=Os12g0480000;Note=Zinc finger%2C DHHC-type domain containing protein.;Transcript_evidence=AK061316 (DDBJ%2C Best hit);ORF_evidence=Q01JA7 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C DHHC-type%2C palmitoyltransferase (IPR001594);NIAS_FLcDNA=006-302-D08;Expression=AK061316;TENOR=Os12t0480000-01;KEGG=Os12t0480000-01
Chr12	irgsp1_rep	five_prime_UTR	17619427	17619571	.	+	.	Parent=Os12t0480000-01
Chr12	irgsp1_rep	CDS	17619572	17619620	.	+	0	Parent=Os12t0480000-01
Chr12	irgsp1_rep	CDS	17619705	17619822	.	+	2	Parent=Os12t0480000-01
Chr12	irgsp1_rep	CDS	17620299	17620373	.	+	1	Parent=Os12t0480000-01
Chr12	irgsp1_rep	CDS	17620459	17620530	.	+	1	Parent=Os12t0480000-01
Chr12	irgsp1_rep	CDS	17620627	17620761	.	+	1	Parent=Os12t0480000-01
Chr12	irgsp1_rep	CDS	17620876	17620909	.	+	1	Parent=Os12t0480000-01
Chr12	irgsp1_rep	CDS	17621514	17621623	.	+	0	Parent=Os12t0480000-01
Chr12	irgsp1_rep	CDS	17622246	17622332	.	+	1	Parent=Os12t0480000-01
Chr12	irgsp1_rep	CDS	17622452	17622535	.	+	1	Parent=Os12t0480000-01
Chr12	irgsp1_rep	CDS	17623109	17623174	.	+	1	Parent=Os12t0480000-01
Chr12	irgsp1_rep	CDS	17623260	17623434	.	+	1	Parent=Os12t0480000-01
Chr12	irgsp1_rep	three_prime_UTR	17623435	17623993	.	+	.	Parent=Os12t0480000-01
Chr12	irgsp1_rep	mRNA	17624501	17625313	.	+	.	ID=Os12t0480100-01;Name=Os12t0480100-01;Locus_id=Os12g0480100;Note=Similar to One helix protein (OHP).;Transcript_evidence=AK120556 (DDBJ%2C Best hit);ORF_evidence=Q8LPV2 (UniProt);InterPro=Chlorophyll a/b binding protein domain (IPR023329);NIAS_FLcDNA=J013131C05;Expression=AK120556;TENOR=Os12t0480100-01;KEGG=Os12t0480100-01
Chr12	irgsp1_rep	five_prime_UTR	17624501	17624524	.	+	.	Parent=Os12t0480100-01
Chr12	irgsp1_rep	CDS	17624525	17624674	.	+	0	Parent=Os12t0480100-01
Chr12	irgsp1_rep	CDS	17624796	17624918	.	+	0	Parent=Os12t0480100-01
Chr12	irgsp1_rep	CDS	17625031	17625099	.	+	0	Parent=Os12t0480100-01
Chr12	irgsp1_rep	three_prime_UTR	17625100	17625313	.	+	.	Parent=Os12t0480100-01
Chr12	irgsp1_rep	mRNA	17628181	17632392	.	-	.	ID=Os12t0480200-01;Name=Os12t0480200-01;Locus_id=Os12g0480200;Note=Similar to H0321H01.14 protein.;Transcript_evidence=AK107126 (DDBJ%2C Best hit);ORF_evidence=Q01L66 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=002-124-B11;TENOR=Os12t0480200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	17632218	17632392	.	-	.	Parent=Os12t0480200-01
Chr12	irgsp1_rep	five_prime_UTR	17630637	17631485	.	-	.	Parent=Os12t0480200-01
Chr12	irgsp1_rep	CDS	17630605	17630636	.	-	0	Parent=Os12t0480200-01
Chr12	irgsp1_rep	CDS	17629737	17630165	.	-	1	Parent=Os12t0480200-01
Chr12	irgsp1_rep	CDS	17628350	17629181	.	-	1	Parent=Os12t0480200-01
Chr12	irgsp1_rep	three_prime_UTR	17628181	17628349	.	-	.	Parent=Os12t0480200-01
Chr12	irgsp1_rep	mRNA	17628428	17629204	.	+	.	ID=Os12t0480250-00;Name=Os12t0480250-00;Locus_id=Os12g0480250;Note=Hypothetical protein.;Transcript_evidence=EU943630 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0480250-00
Chr12	irgsp1_rep	five_prime_UTR	17628428	17628428	.	+	.	Parent=Os12t0480250-00
Chr12	irgsp1_rep	CDS	17628429	17628713	.	+	0	Parent=Os12t0480250-00
Chr12	irgsp1_rep	three_prime_UTR	17628714	17629204	.	+	.	Parent=Os12t0480250-00
Chr12	irgsp1_rep	mRNA	17646581	17651255	.	-	.	ID=Os12t0480300-01;Name=Os12t0480300-01;Locus_id=Os12g0480300;Note=Hypothetical gene.;Transcript_evidence=AK288778 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090068L12;TENOR=Os12t0480300-01;KEGG=Os12t0480300-01
Chr12	irgsp1_rep	five_prime_UTR	17648844	17651255	.	-	.	Parent=Os12t0480300-01
Chr12	irgsp1_rep	CDS	17648547	17648843	.	-	0	Parent=Os12t0480300-01
Chr12	irgsp1_rep	three_prime_UTR	17646581	17648546	.	-	.	Parent=Os12t0480300-01
Chr12	irgsp1_rep	mRNA	17668569	17670103	.	+	.	ID=Os12t0480800-00;Name=Os12t0480800-00;Locus_id=Os12g0480800;Note=Protein of unknown function DUF247%2C plant domain containing protein.;Transcript_evidence=AK367317 (DDBJ);ORF_evidence=Q2QQW6 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);TENOR=Os12t0480800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	17668569	17669195	.	+	0	Parent=Os12t0480800-00
Chr12	irgsp1_rep	CDS	17669312	17670103	.	+	0	Parent=Os12t0480800-00
Chr12	irgsp1_rep	mRNA	17680782	17682682	.	-	.	ID=Os12t0481000-00;Name=Os12t0481000-00;Locus_id=Os12g0481000;Note=Protein of unknown function DUF247%2C plant domain containing protein.;Transcript_evidence=EU974090 (DDBJ);ORF_evidence=B8BPM8 (UniProt);InterPro=Protein of unknown function DUF247%2C plant (IPR004158);TENOR=Os12t0481000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	17682675	17682682	.	-	.	Parent=Os12t0481000-00
Chr12	irgsp1_rep	CDS	17682039	17682674	.	-	0	Parent=Os12t0481000-00
Chr12	irgsp1_rep	CDS	17680782	17681522	.	-	0	Parent=Os12t0481000-00
Chr12	irgsp1_rep	mRNA	17684802	17694915	.	-	.	ID=Os12t0481100-01;Name=Os12t0481100-01;Locus_id=Os12g0481100;Oryzabase Gene Symbol Synonym(s)=OsRH28;Oryzabase Gene Name Synonym(s)=RNA helicase 28;Note=Similar to cDNA clone:J033010C22%2C full insert sequence.;Transcript_evidence=AK099385 (DDBJ%2C Best hit),AK073151 (DDBJ%2C Best hit);ORF_evidence=B7ELR4 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=RNA helicase%2C ATP-dependent%2C DEAD-box%2C conserved site (IPR000629),Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=J033074G02,J033010C22;Oryzabase=19140;TENOR=Os12t0481100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	17694822	17694915	.	-	.	Parent=Os12t0481100-01
Chr12	irgsp1_rep	CDS	17694324	17694821	.	-	0	Parent=Os12t0481100-01
Chr12	irgsp1_rep	CDS	17693997	17694161	.	-	0	Parent=Os12t0481100-01
Chr12	irgsp1_rep	CDS	17693112	17693180	.	-	0	Parent=Os12t0481100-01
Chr12	irgsp1_rep	CDS	17692925	17693031	.	-	0	Parent=Os12t0481100-01
Chr12	irgsp1_rep	CDS	17692196	17692274	.	-	1	Parent=Os12t0481100-01
Chr12	irgsp1_rep	CDS	17691474	17691647	.	-	0	Parent=Os12t0481100-01
Chr12	irgsp1_rep	CDS	17690712	17690860	.	-	0	Parent=Os12t0481100-01
Chr12	irgsp1_rep	CDS	17690520	17690615	.	-	1	Parent=Os12t0481100-01
Chr12	irgsp1_rep	CDS	17689965	17690067	.	-	1	Parent=Os12t0481100-01
Chr12	irgsp1_rep	CDS	17689488	17689550	.	-	0	Parent=Os12t0481100-01
Chr12	irgsp1_rep	CDS	17689271	17689332	.	-	0	Parent=Os12t0481100-01
Chr12	irgsp1_rep	CDS	17688466	17688562	.	-	1	Parent=Os12t0481100-01
Chr12	irgsp1_rep	CDS	17687952	17688070	.	-	0	Parent=Os12t0481100-01
Chr12	irgsp1_rep	CDS	17687838	17687880	.	-	1	Parent=Os12t0481100-01
Chr12	irgsp1_rep	CDS	17687602	17687703	.	-	0	Parent=Os12t0481100-01
Chr12	irgsp1_rep	CDS	17686136	17686231	.	-	0	Parent=Os12t0481100-01
Chr12	irgsp1_rep	CDS	17685960	17686046	.	-	0	Parent=Os12t0481100-01
Chr12	irgsp1_rep	CDS	17685164	17685444	.	-	0	Parent=Os12t0481100-01
Chr12	irgsp1_rep	CDS	17684984	17685002	.	-	1	Parent=Os12t0481100-01
Chr12	irgsp1_rep	three_prime_UTR	17684802	17684983	.	-	.	Parent=Os12t0481100-01
Chr12	irgsp1_rep	mRNA	17695088	17698325	.	+	.	ID=Os12t0481200-01;Name=Os12t0481200-01;Locus_id=Os12g0481200;Note=Conserved hypothetical protein.;Transcript_evidence=AK102011 (DDBJ%2C Best hit);ORF_evidence=B8BPN0 (UniProt);NIAS_FLcDNA=J033080C14;Expression=AK102011;TENOR=Os12t0481200-01;KEGG=Os12t0481200-01
Chr12	irgsp1_rep	five_prime_UTR	17695088	17695163	.	+	.	Parent=Os12t0481200-01
Chr12	irgsp1_rep	CDS	17695164	17695216	.	+	0	Parent=Os12t0481200-01
Chr12	irgsp1_rep	CDS	17697924	17698149	.	+	1	Parent=Os12t0481200-01
Chr12	irgsp1_rep	three_prime_UTR	17698150	17698325	.	+	.	Parent=Os12t0481200-01
Chr12	irgsp1_rep	mRNA	17708000	17715334	.	-	.	ID=Os12t0481400-00;Name=Os12t0481400-00;Locus_id=Os12g0481400;Note=Similar to NBS-LRR disease resistance protein homologue.;Transcript_evidence=tplb0004h23 (Wheat FLcDNA);ORF_evidence=Q84KC2 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os12t0481400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	17715224	17715334	.	-	.	Parent=Os12t0481400-00
Chr12	irgsp1_rep	CDS	17715218	17715223	.	-	0	Parent=Os12t0481400-00
Chr12	irgsp1_rep	CDS	17708000	17712508	.	-	0	Parent=Os12t0481400-00
Chr12	irgsp1_rep	mRNA	17735989	17740563	.	-	.	ID=Os12t0481700-00;Name=Os12t0481700-00;Locus_id=Os12g0481700;Note=Disease resistance protein domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001176954.1 (RefSeq);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os12t0481700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	17735989	17740563	.	-	0	Parent=Os12t0481700-00
Chr12	irgsp1_rep	mRNA	17758510	17763084	.	-	.	ID=Os12t0482100-00;Name=Os12t0482100-00;Locus_id=Os12g0482100;Note=Disease resistance protein domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001176954.1 (RefSeq);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os12t0482100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	17758510	17763084	.	-	0	Parent=Os12t0482100-00
Chr12	irgsp1_rep	mRNA	17779264	17782698	.	-	.	ID=Os12t0482500-01;Name=Os12t0482500-01;Locus_id=Os12g0482500;Note=Protein of unknown function DUF593 domain containing protein.;Transcript_evidence=AK120590 (DDBJ%2C Best hit);ORF_evidence=A2YIZ5 (UniProt);InterPro=Protein of unknown function DUF593 (IPR007656);NIAS_FLcDNA=J013145N02;Expression=AK120590;TENOR=Os12t0482500-01;KEGG=Os12t0482500-01
Chr12	irgsp1_rep	five_prime_UTR	17782482	17782698	.	-	.	Parent=Os12t0482500-01
Chr12	irgsp1_rep	CDS	17782094	17782481	.	-	0	Parent=Os12t0482500-01
Chr12	irgsp1_rep	CDS	17779470	17780356	.	-	2	Parent=Os12t0482500-01
Chr12	irgsp1_rep	three_prime_UTR	17779264	17779469	.	-	.	Parent=Os12t0482500-01
Chr12	irgsp1_rep	mRNA	17786049	17788784	.	+	.	ID=Os12t0482600-01;Name=Os12t0482600-01;Locus_id=Os12g0482600;Note=Protein of unknown function DUF502 family protein.;Transcript_evidence=AK069386 (DDBJ%2C Best hit);ORF_evidence=NP_001149490.1 (RefSeq);InterPro=Protein of unknown function DUF502 (IPR007462);NIAS_FLcDNA=J023012H16;Expression=AK069386;TENOR=Os12t0482600-01;KEGG=Os12t0482600-01
Chr12	irgsp1_rep	five_prime_UTR	17786049	17786050	.	+	.	Parent=Os12t0482600-01
Chr12	irgsp1_rep	CDS	17786051	17786251	.	+	0	Parent=Os12t0482600-01
Chr12	irgsp1_rep	CDS	17787136	17787188	.	+	0	Parent=Os12t0482600-01
Chr12	irgsp1_rep	CDS	17787423	17787532	.	+	1	Parent=Os12t0482600-01
Chr12	irgsp1_rep	CDS	17787747	17787914	.	+	2	Parent=Os12t0482600-01
Chr12	irgsp1_rep	CDS	17787994	17787998	.	+	2	Parent=Os12t0482600-01
Chr12	irgsp1_rep	three_prime_UTR	17787999	17788273	.	+	.	Parent=Os12t0482600-01
Chr12	irgsp1_rep	three_prime_UTR	17788413	17788784	.	+	.	Parent=Os12t0482600-01
Chr12	irgsp1_rep	mRNA	17788780	17791111	.	-	.	ID=Os12t0482700-01;Name=Os12t0482700-01;Locus_id=Os12g0482700;Note=Similar to L-galactose dehydrogenase.;Transcript_evidence=AK060431 (DDBJ%2C Best hit),AK067039 (DDBJ%2C Best hit);ORF_evidence=Q1PBI0 (UniProt);InterPro=Aldo/keto reductase (IPR001395),NADP-dependent oxidoreductase domain (IPR023210);NIAS_FLcDNA=001-011-B02,J013091L23;Expression=AK060431;TENOR=Os12t0482700-01;KEGG=Os12t0482700-01
Chr12	irgsp1_rep	five_prime_UTR	17791041	17791111	.	-	.	Parent=Os12t0482700-01
Chr12	irgsp1_rep	CDS	17790880	17791040	.	-	0	Parent=Os12t0482700-01
Chr12	irgsp1_rep	CDS	17790565	17790793	.	-	1	Parent=Os12t0482700-01
Chr12	irgsp1_rep	CDS	17790155	17790454	.	-	0	Parent=Os12t0482700-01
Chr12	irgsp1_rep	CDS	17789662	17789790	.	-	0	Parent=Os12t0482700-01
Chr12	irgsp1_rep	CDS	17788992	17789123	.	-	0	Parent=Os12t0482700-01
Chr12	irgsp1_rep	three_prime_UTR	17788780	17788991	.	-	.	Parent=Os12t0482700-01
Chr12	irgsp1_rep	mRNA	17788701	17791072	.	-	.	ID=Os12t0482700-02;Name=Os12t0482700-02;Locus_id=Os12g0482700;Note=Similar to L-galactose dehydrogenase.;Transcript_evidence=AK102223 (DDBJ%2C Best hit);ORF_evidence=Q1PBI0 (UniProt);InterPro=Aldo/keto reductase (IPR001395),NADP-dependent oxidoreductase domain (IPR023210);NIAS_FLcDNA=J033087M07;TENOR=Os12t0482700-02;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	17791041	17791072	.	-	.	Parent=Os12t0482700-02
Chr12	irgsp1_rep	CDS	17790880	17791040	.	-	0	Parent=Os12t0482700-02
Chr12	irgsp1_rep	CDS	17790565	17790793	.	-	1	Parent=Os12t0482700-02
Chr12	irgsp1_rep	CDS	17790155	17790454	.	-	0	Parent=Os12t0482700-02
Chr12	irgsp1_rep	CDS	17789662	17789790	.	-	0	Parent=Os12t0482700-02
Chr12	irgsp1_rep	CDS	17788992	17789123	.	-	0	Parent=Os12t0482700-02
Chr12	irgsp1_rep	three_prime_UTR	17788701	17788991	.	-	.	Parent=Os12t0482700-02
Chr12	irgsp1_rep	mRNA	17823178	17823945	.	-	.	ID=Os12t0483450-00;Name=Os12t0483450-00;Locus_id=Os12g0483450;Note=Protein of unknown function DUF1719%2C Oryza sativa domain containing protein.;Transcript_evidence=EU970943 (DDBJ);ORF_evidence=Q2QQU6 (UniProt);InterPro=Protein of unknown function DUF1719%2C Oryza sativa (IPR013181);TENOR=Os12t0483450-00
Chr12	irgsp1_rep	CDS	17823178	17823945	.	-	0	Parent=Os12t0483450-00
Chr12	irgsp1_rep	mRNA	17824764	17825520	.	+	.	ID=Os12t0483600-00;Name=Os12t0483600-00;Locus_id=Os12g0483600;Note=Hypothetical conserved gene.;Transcript_evidence=CU406484 (DDBJ%2C Best hit);ORF_evidence=GeneMark;TENOR=Os12t0483600-00;KEGG=Os12t0483600-00
Chr12	irgsp1_rep	CDS	17824764	17825357	.	+	0	Parent=Os12t0483600-00
Chr12	irgsp1_rep	three_prime_UTR	17825358	17825520	.	+	.	Parent=Os12t0483600-00
Chr12	irgsp1_rep	mRNA	17832229	17835027	.	-	.	ID=Os12t0483700-01;Name=Os12t0483700-01;Locus_id=Os12g0483700;Note=Hypothetical conserved gene.;Transcript_evidence=AK110952 (DDBJ%2C Best hit);ORF_evidence=B8ALQ9 (UniProt);NIAS_FLcDNA=002-174-A02;Expression=AK110952;TENOR=Os12t0483700-01;KEGG=Os12t0483700-01
Chr12	irgsp1_rep	five_prime_UTR	17834449	17835027	.	-	.	Parent=Os12t0483700-01
Chr12	irgsp1_rep	five_prime_UTR	17833583	17833697	.	-	.	Parent=Os12t0483700-01
Chr12	irgsp1_rep	CDS	17833556	17833582	.	-	0	Parent=Os12t0483700-01
Chr12	irgsp1_rep	CDS	17832329	17832502	.	-	0	Parent=Os12t0483700-01
Chr12	irgsp1_rep	three_prime_UTR	17832229	17832328	.	-	.	Parent=Os12t0483700-01
Chr12	irgsp1_rep	mRNA	17830904	17833121	.	-	.	ID=Os12t0483700-02;Name=Os12t0483700-02;Locus_id=Os12g0483700;Note=Hypothetical conserved gene.;Transcript_evidence=AK064453 (DDBJ%2C Best hit);ORF_evidence=B8ALQ9 (UniProt);NIAS_FLcDNA=002-110-F08;Expression=AK064453;TENOR=Os12t0483700-02;KEGG=Os12t0483700-02
Chr12	irgsp1_rep	five_prime_UTR	17832509	17833121	.	-	.	Parent=Os12t0483700-02
Chr12	irgsp1_rep	CDS	17832329	17832508	.	-	0	Parent=Os12t0483700-02
Chr12	irgsp1_rep	three_prime_UTR	17830904	17832328	.	-	.	Parent=Os12t0483700-02
Chr12	irgsp1_rep	mRNA	17865895	17866566	.	+	.	ID=Os12t0484100-00;Name=Os12t0484100-00;Locus_id=Os12g0484100;Note=Hypothetical conserved gene.;Transcript_evidence=CT835542 (DDBJ%2C Best hit);ORF_evidence=Q33AN9 (UniProt);TENOR=Os12t0484100-00;KEGG=Os12t0484100-00
Chr12	irgsp1_rep	five_prime_UTR	17865895	17865975	.	+	.	Parent=Os12t0484100-00
Chr12	irgsp1_rep	CDS	17865976	17866209	.	+	0	Parent=Os12t0484100-00
Chr12	irgsp1_rep	three_prime_UTR	17866210	17866566	.	+	.	Parent=Os12t0484100-00
Chr12	irgsp1_rep	mRNA	17893729	17894557	.	+	.	ID=Os12t0484375-00;Name=Os12t0484375-00;Locus_id=Os12g0484375;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);InterPro=Ribonuclease H1%2C N-terminal (IPR011320);TENOR=Os12t0484375-00
Chr12	irgsp1_rep	five_prime_UTR	17893729	17893732	.	+	.	Parent=Os12t0484375-00
Chr12	irgsp1_rep	CDS	17893733	17894557	.	+	0	Parent=Os12t0484375-00
Chr12	irgsp1_rep	mRNA	17900930	17902951	.	+	.	ID=Os12t0484600-01;Name=Os12t0484600-01;Locus_id=Os12g0484600;Note=Nodule-specific protein-like.;Transcript_evidence=AK058449 (DDBJ%2C Best hit);ORF_evidence=NP_001152028.1 (RefSeq);InterPro=Nodulin-like (IPR010658),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=001-015-G09;Expression=AK058449;TENOR=Os12t0484600-01;KEGG=Os12t0484600-01
Chr12	irgsp1_rep	five_prime_UTR	17900930	17901009	.	+	.	Parent=Os12t0484600-01
Chr12	irgsp1_rep	CDS	17901010	17901470	.	+	0	Parent=Os12t0484600-01
Chr12	irgsp1_rep	CDS	17901894	17902809	.	+	1	Parent=Os12t0484600-01
Chr12	irgsp1_rep	three_prime_UTR	17902810	17902951	.	+	.	Parent=Os12t0484600-01
Chr12	irgsp1_rep	mRNA	17900930	17902995	.	+	.	ID=Os12t0484600-02;Name=Os12t0484600-02;Locus_id=Os12g0484600;Note=Nodulin-like domain containing protein.;Transcript_evidence=AK121736 (DDBJ%2C Best hit);ORF_evidence=NP_001152028.1 (RefSeq);InterPro=Nodulin-like (IPR010658),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J033084H17;Expression=AK121736;TENOR=Os12t0484600-02;KEGG=Os12t0484600-02
Chr12	irgsp1_rep	five_prime_UTR	17900930	17901009	.	+	.	Parent=Os12t0484600-02
Chr12	irgsp1_rep	CDS	17901010	17902809	.	+	0	Parent=Os12t0484600-02
Chr12	irgsp1_rep	three_prime_UTR	17902810	17902995	.	+	.	Parent=Os12t0484600-02
Chr12	irgsp1_rep	mRNA	17907213	17909016	.	-	.	ID=Os12t0484700-01;Name=Os12t0484700-01;Locus_id=Os12g0484700;Note=Similar to Yippee-like protein CG15309.;Transcript_evidence=AK121352 (DDBJ%2C Best hit);ORF_evidence=B6TSY7 (UniProt);InterPro=Yippee-like protein (IPR004910);NIAS_FLcDNA=J023121O17;Expression=AK121352;TENOR=Os12t0484700-01;KEGG=Os12t0484700-01
Chr12	irgsp1_rep	five_prime_UTR	17908920	17909016	.	-	.	Parent=Os12t0484700-01
Chr12	irgsp1_rep	five_prime_UTR	17908662	17908701	.	-	.	Parent=Os12t0484700-01
Chr12	irgsp1_rep	CDS	17908560	17908661	.	-	0	Parent=Os12t0484700-01
Chr12	irgsp1_rep	CDS	17907578	17907805	.	-	0	Parent=Os12t0484700-01
Chr12	irgsp1_rep	three_prime_UTR	17907213	17907577	.	-	.	Parent=Os12t0484700-01
Chr12	irgsp1_rep	mRNA	17915628	17919491	.	+	.	ID=Os12t0484900-01;Name=Os12t0484900-01;Locus_id=Os12g0484900;RAP-DB Gene Symbol Synonym(s)=OsGRF7;RAP-DB Gene Name Synonym(s)=GROWTH-REGULATING FACTOR 7;CGSNL Gene Symbol=GRF7;CGSNL Gene Name=GROWTH-REGULATING FACTOR 7;Oryzabase Gene Symbol Synonym(s)=OsGRF7;Oryzabase Gene Name Synonym(s)=growth-regulating factor7;Note=Growth-regulating factor%2C Modulation of plant architecture%2C Regulation of auxin and gibberellin metabolism;Transcript_evidence=AK241557;ORF_evidence=Q6AWY2;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: ATP binding (GO:0005524),Cellular Component: nucleus (GO:0005634);InterPro=Glutamine-Leucine-Glutamine%2C QLQ (IPR014978),WRC domain (IPR014977);NIAS_FLcDNA=J065178H17;Manual Curation=June 26%2C 2020;Literature_PMID=32581114;Oryzabase=10281,23059;TENOR=Os12t0484900-01;KEGG=Os12t0484900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=nucleus (GO:0005634)
Chr12	irgsp1_rep	five_prime_UTR	17915628	17915927	.	+	.	Parent=Os12t0484900-01
Chr12	irgsp1_rep	CDS	17915928	17915976	.	+	0	Parent=Os12t0484900-01
Chr12	irgsp1_rep	CDS	17916701	17916931	.	+	2	Parent=Os12t0484900-01
Chr12	irgsp1_rep	CDS	17917551	17917854	.	+	2	Parent=Os12t0484900-01
Chr12	irgsp1_rep	CDS	17918623	17919274	.	+	1	Parent=Os12t0484900-01
Chr12	irgsp1_rep	three_prime_UTR	17919275	17919491	.	+	.	Parent=Os12t0484900-01
Chr12	irgsp1_rep	mRNA	17924546	17931666	.	-	.	ID=Os12t0485000-01;Name=Os12t0485000-01;Locus_id=Os12g0485000;Note=Similar to O-sialoglycoprotein endopeptidase.;Transcript_evidence=AK099965 (DDBJ%2C Best hit);ORF_evidence=B6SU43 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: metalloendopeptidase activity (GO:0004222);InterPro=Peptidase M22%2C glycoprotease (IPR000905),Peptidase M22%2C glycoprotease%2C subgroup (IPR017861);NIAS_FLcDNA=J013126M09;TENOR=Os12t0485000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	17931640	17931666	.	-	.	Parent=Os12t0485000-01
Chr12	irgsp1_rep	CDS	17931202	17931639	.	-	0	Parent=Os12t0485000-01
Chr12	irgsp1_rep	CDS	17931001	17931075	.	-	0	Parent=Os12t0485000-01
Chr12	irgsp1_rep	CDS	17930823	17930919	.	-	0	Parent=Os12t0485000-01
Chr12	irgsp1_rep	CDS	17930310	17930400	.	-	2	Parent=Os12t0485000-01
Chr12	irgsp1_rep	CDS	17927710	17927713	.	-	1	Parent=Os12t0485000-01
Chr12	irgsp1_rep	three_prime_UTR	17927615	17927709	.	-	.	Parent=Os12t0485000-01
Chr12	irgsp1_rep	three_prime_UTR	17927385	17927470	.	-	.	Parent=Os12t0485000-01
Chr12	irgsp1_rep	three_prime_UTR	17926757	17926835	.	-	.	Parent=Os12t0485000-01
Chr12	irgsp1_rep	three_prime_UTR	17926599	17926682	.	-	.	Parent=Os12t0485000-01
Chr12	irgsp1_rep	three_prime_UTR	17926394	17926508	.	-	.	Parent=Os12t0485000-01
Chr12	irgsp1_rep	three_prime_UTR	17925984	17926072	.	-	.	Parent=Os12t0485000-01
Chr12	irgsp1_rep	three_prime_UTR	17924546	17924983	.	-	.	Parent=Os12t0485000-01
Chr12	irgsp1_rep	mRNA	17924596	17931646	.	-	.	ID=Os12t0485000-02;Name=Os12t0485000-02;Locus_id=Os12g0485000;Note=Peptidase M22%2C glycoprotease domain containing protein.;Transcript_evidence=AK070912 (DDBJ%2C Best hit);ORF_evidence=B6SU43 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: metalloendopeptidase activity (GO:0004222);InterPro=Peptidase M22%2C glycoprotease (IPR000905),Peptidase M22%2C glycoprotease%2C subgroup (IPR017861),Peptidase M22%2C O-sialoglycoprotein peptidase (IPR022450);NIAS_FLcDNA=J023064I01;Expression=AK070912;TENOR=Os12t0485000-02;KEGG=Os12t0485000-02 (EC:3.4.24.57)
Chr12	irgsp1_rep	five_prime_UTR	17931624	17931646	.	-	.	Parent=Os12t0485000-02
Chr12	irgsp1_rep	CDS	17931366	17931623	.	-	0	Parent=Os12t0485000-02
Chr12	irgsp1_rep	CDS	17931202	17931246	.	-	0	Parent=Os12t0485000-02
Chr12	irgsp1_rep	CDS	17931001	17931075	.	-	0	Parent=Os12t0485000-02
Chr12	irgsp1_rep	CDS	17930823	17930919	.	-	0	Parent=Os12t0485000-02
Chr12	irgsp1_rep	CDS	17930310	17930400	.	-	2	Parent=Os12t0485000-02
Chr12	irgsp1_rep	CDS	17929614	17929663	.	-	1	Parent=Os12t0485000-02
Chr12	irgsp1_rep	CDS	17927589	17927779	.	-	2	Parent=Os12t0485000-02
Chr12	irgsp1_rep	CDS	17927385	17927470	.	-	0	Parent=Os12t0485000-02
Chr12	irgsp1_rep	CDS	17926757	17926835	.	-	1	Parent=Os12t0485000-02
Chr12	irgsp1_rep	CDS	17926599	17926682	.	-	0	Parent=Os12t0485000-02
Chr12	irgsp1_rep	CDS	17926394	17926508	.	-	0	Parent=Os12t0485000-02
Chr12	irgsp1_rep	CDS	17925984	17926072	.	-	2	Parent=Os12t0485000-02
Chr12	irgsp1_rep	CDS	17924858	17924983	.	-	0	Parent=Os12t0485000-02
Chr12	irgsp1_rep	three_prime_UTR	17924596	17924857	.	-	.	Parent=Os12t0485000-02
Chr12	irgsp1_rep	mRNA	17939006	17940195	.	-	.	ID=Os12t0485150-00;Name=Os12t0485150-00;Locus_id=Os12g0485150;Note=Conserved hypothetical protein.;Transcript_evidence=FP094538 (DDBJ);ORF_evidence=B9GD64 (UniProt);TENOR=Os12t0485150-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	17940164	17940195	.	-	.	Parent=Os12t0485150-00
Chr12	irgsp1_rep	CDS	17939277	17940163	.	-	0	Parent=Os12t0485150-00
Chr12	irgsp1_rep	CDS	17939177	17939210	.	-	1	Parent=Os12t0485150-00
Chr12	irgsp1_rep	three_prime_UTR	17939006	17939176	.	-	.	Parent=Os12t0485150-00
Chr12	irgsp1_rep	mRNA	17950541	17951121	.	+	.	ID=Os12t0485300-01;Name=Os12t0485300-01;Locus_id=Os12g0485300;Note=Non-protein coding transcript.;Transcript_evidence=AK064188 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-104-C04;TENOR=Os12t0485300-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	exon	17950541	17951121	.	+	.	Parent=Os12t0485300-01
Chr12	irgsp1_rep	mRNA	17955781	17964284	.	+	.	ID=Os12t0485400-01;Name=Os12t0485400-01;Locus_id=Os12g0485400;CGSNL Gene Symbol=CYCT1%3B6;CGSNL Gene Name=CYCLIN-T1-6;Oryzabase Gene Symbol Synonym(s)=CycT1%3B6%2C CycT1%3Bos%3B6%2C Orysa%3BCycT1%3B6;Oryzabase Gene Name Synonym(s)=T-type cyclin 1%3B6;Note=Similar to Cyclin T1 (Fragment).;Transcript_evidence=AK100044 (DDBJ%2C Best hit),AK100051 (DDBJ%2C Best hit);ORF_evidence=Q2QQS5 (UniProt);GO=Biological Process: regulation of cyclin-dependent protein kinase activity (GO:0000079),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin%2C C-terminal (IPR004367),Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763),Cyclin C/H/T/L (IPR015429);NIAS_FLcDNA=J013153K21,J013155O14;Oryzabase=13280;TENOR=Os12t0485400-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	17955781	17956051	.	+	.	Parent=Os12t0485400-01
Chr12	irgsp1_rep	five_prime_UTR	17957148	17957227	.	+	.	Parent=Os12t0485400-01
Chr12	irgsp1_rep	CDS	17957228	17957463	.	+	0	Parent=Os12t0485400-01
Chr12	irgsp1_rep	CDS	17957995	17958076	.	+	1	Parent=Os12t0485400-01
Chr12	irgsp1_rep	CDS	17959718	17959852	.	+	0	Parent=Os12t0485400-01
Chr12	irgsp1_rep	CDS	17960513	17960688	.	+	0	Parent=Os12t0485400-01
Chr12	irgsp1_rep	CDS	17960772	17960923	.	+	1	Parent=Os12t0485400-01
Chr12	irgsp1_rep	CDS	17962848	17963698	.	+	2	Parent=Os12t0485400-01
Chr12	irgsp1_rep	three_prime_UTR	17963699	17964284	.	+	.	Parent=Os12t0485400-01
Chr12	irgsp1_rep	mRNA	17964742	17967694	.	-	.	ID=Os12t0485500-01;Name=Os12t0485500-01;Locus_id=Os12g0485500;CGSNL Gene Symbol=ISC8;CGSNL Gene Name=IRON-SULFUR CLUSTER PROTEIN 8;Oryzabase Gene Symbol Synonym(s)=OsISC8;Oryzabase Gene Name Synonym(s)=Iron-sulfur cluster protein 8;Note=Similar to HesB/YadR/YfhF family protein.;Transcript_evidence=AK071132 (DDBJ%2C Best hit),AK099510 (DDBJ%2C Best hit);ORF_evidence=NP_001149194.1 (RefSeq);GO=Biological Process: iron-sulfur cluster assembly (GO:0016226),Molecular Function: structural molecule activity (GO:0005198),Molecular Function: iron-sulfur cluster binding (GO:0051536);InterPro=FeS cluster biogenesis (IPR000361),FeS cluster insertion (IPR016092),FeS cluster insertion%2C C-terminal%2C conserved site (IPR017870);NIAS_FLcDNA=J023076O17,J013029F07;Oryzabase=13423;Expression=AK071132;TENOR=Os12t0485500-01;KEGG=Os12t0485500-01
Chr12	irgsp1_rep	five_prime_UTR	17967518	17967694	.	-	.	Parent=Os12t0485500-01
Chr12	irgsp1_rep	five_prime_UTR	17967003	17967058	.	-	.	Parent=Os12t0485500-01
Chr12	irgsp1_rep	CDS	17966813	17967002	.	-	0	Parent=Os12t0485500-01
Chr12	irgsp1_rep	CDS	17965459	17965576	.	-	2	Parent=Os12t0485500-01
Chr12	irgsp1_rep	CDS	17965293	17965386	.	-	1	Parent=Os12t0485500-01
Chr12	irgsp1_rep	three_prime_UTR	17964742	17965292	.	-	.	Parent=Os12t0485500-01
Chr12	irgsp1_rep	mRNA	17979213	17983355	.	-	.	ID=Os12t0485600-01;Name=Os12t0485600-01;Locus_id=Os12g0485600;Oryzabase Gene Symbol Synonym(s)=OsLHT4A%2C LHT4A%2C OsLHT6%2C LHT6;Oryzabase Gene Name Synonym(s)=lysine-histidine-like transporter 4A%2C lysine and histidine transporter 6;Note=Amino acid transporter%2C transmembrane domain containing protein.;Transcript_evidence=AK100852 (DDBJ%2C Best hit);ORF_evidence=XP_002327101.1 (RefSeq);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=J023123J03;Oryzabase=18508;Expression=AK100852;TENOR=Os12t0485600-01;KEGG=Os12t0485600-01
Chr12	irgsp1_rep	five_prime_UTR	17983006	17983355	.	-	.	Parent=Os12t0485600-01
Chr12	irgsp1_rep	CDS	17982662	17983005	.	-	0	Parent=Os12t0485600-01
Chr12	irgsp1_rep	CDS	17981177	17981310	.	-	1	Parent=Os12t0485600-01
Chr12	irgsp1_rep	CDS	17980193	17980620	.	-	2	Parent=Os12t0485600-01
Chr12	irgsp1_rep	CDS	17979958	17980090	.	-	0	Parent=Os12t0485600-01
Chr12	irgsp1_rep	CDS	17979367	17979854	.	-	2	Parent=Os12t0485600-01
Chr12	irgsp1_rep	three_prime_UTR	17979213	17979366	.	-	.	Parent=Os12t0485600-01
Chr12	irgsp1_rep	mRNA	18002177	18005087	.	+	.	ID=Os12t0485800-01;Name=Os12t0485800-01;Locus_id=Os12g0485800;Note=Prefoldin domain containing protein.;Transcript_evidence=AK067874 (DDBJ%2C Best hit);ORF_evidence=NP_001148267.1 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Cellular Component: prefoldin complex (GO:0016272),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Prefoldin beta-like (IPR002777),Prefoldin (IPR009053);NIAS_FLcDNA=J013123O10;Expression=AK067874;TENOR=Os12t0485800-01;KEGG=Os12t0485800-01
Chr12	irgsp1_rep	five_prime_UTR	18002177	18002289	.	+	.	Parent=Os12t0485800-01
Chr12	irgsp1_rep	five_prime_UTR	18004414	18004457	.	+	.	Parent=Os12t0485800-01
Chr12	irgsp1_rep	CDS	18004458	18004901	.	+	0	Parent=Os12t0485800-01
Chr12	irgsp1_rep	three_prime_UTR	18004902	18005087	.	+	.	Parent=Os12t0485800-01
Chr12	irgsp1_rep	mRNA	18098260	18101695	.	+	.	ID=Os12t0486600-00;Name=Os12t0486600-00;Locus_id=Os12g0486600;CGSNL Gene Symbol=CDPK27;CGSNL Gene Name=CALCIUM-DEPENDENT PROTEIN KINASE 27;Oryzabase Gene Symbol Synonym(s)=OsCDPK27%2C OsCPK27;Oryzabase Gene Name Synonym(s)=calcium-dependent protein kinase;Note=Similar to J013164K19%2C full insert sequence (Fragment).;Transcript_evidence=tplb0059c10 (Wheat FLcDNA);ORF_evidence=B7EKH2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Calcium-binding EF-hand (IPR002048),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),EF-hand-like domain (IPR011992),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=8078;TENOR=Os12t0486600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	18098260	18099021	.	+	0	Parent=Os12t0486600-00
Chr12	irgsp1_rep	CDS	18099083	18099587	.	+	0	Parent=Os12t0486600-00
Chr12	irgsp1_rep	CDS	18099679	18099822	.	+	2	Parent=Os12t0486600-00
Chr12	irgsp1_rep	CDS	18099922	18100074	.	+	2	Parent=Os12t0486600-00
Chr12	irgsp1_rep	CDS	18100150	18100265	.	+	2	Parent=Os12t0486600-00
Chr12	irgsp1_rep	CDS	18100349	18100516	.	+	0	Parent=Os12t0486600-00
Chr12	irgsp1_rep	CDS	18101228	18101695	.	+	0	Parent=Os12t0486600-00
Chr12	irgsp1_rep	mRNA	18098985	18101388	.	-	.	ID=Os12t0486700-00;Name=Os12t0486700-00;Locus_id=Os12g0486700;Note=Hypothetical protein.;Transcript_evidence=tplb0027d15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0486700-00
Chr12	irgsp1_rep	five_prime_UTR	18101240	18101388	.	-	.	Parent=Os12t0486700-00
Chr12	irgsp1_rep	five_prime_UTR	18100285	18100527	.	-	.	Parent=Os12t0486700-00
Chr12	irgsp1_rep	CDS	18100274	18100284	.	-	0	Parent=Os12t0486700-00
Chr12	irgsp1_rep	CDS	18099969	18100115	.	-	1	Parent=Os12t0486700-00
Chr12	irgsp1_rep	CDS	18099671	18099861	.	-	1	Parent=Os12t0486700-00
Chr12	irgsp1_rep	CDS	18099230	18099579	.	-	2	Parent=Os12t0486700-00
Chr12	irgsp1_rep	three_prime_UTR	18098985	18099229	.	-	.	Parent=Os12t0486700-00
Chr12	irgsp1_rep	mRNA	18111165	18113735	.	+	.	ID=Os12t0486800-01;Name=Os12t0486800-01;Locus_id=Os12g0486800;Note=Hypothetical protein.;Transcript_evidence=AK120219 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013041B17;Expression=AK120219;TENOR=Os12t0486800-01;KEGG=Os12t0486800-01
Chr12	irgsp1_rep	five_prime_UTR	18111165	18112636	.	+	.	Parent=Os12t0486800-01
Chr12	irgsp1_rep	CDS	18112637	18113080	.	+	0	Parent=Os12t0486800-01
Chr12	irgsp1_rep	three_prime_UTR	18113081	18113735	.	+	.	Parent=Os12t0486800-01
Chr12	irgsp1_rep	mRNA	18116036	18120679	.	+	.	ID=Os12t0486900-01;Name=Os12t0486900-01;Locus_id=Os12g0486900;CGSNL Gene Symbol=RLCK369;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 369;Oryzabase Gene Symbol Synonym(s)=OsRLCK369;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 369;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=AK109689 (DDBJ%2C Best hit);ORF_evidence=Q2QQQ9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=002-145-E02;Oryzabase=19039;TENOR=Os12t0486900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	18116036	18116037	.	+	.	Parent=Os12t0486900-01
Chr12	irgsp1_rep	CDS	18116038	18116137	.	+	0	Parent=Os12t0486900-01
Chr12	irgsp1_rep	CDS	18116470	18116692	.	+	2	Parent=Os12t0486900-01
Chr12	irgsp1_rep	CDS	18117390	18117516	.	+	1	Parent=Os12t0486900-01
Chr12	irgsp1_rep	CDS	18117624	18117851	.	+	0	Parent=Os12t0486900-01
Chr12	irgsp1_rep	CDS	18119218	18119364	.	+	0	Parent=Os12t0486900-01
Chr12	irgsp1_rep	CDS	18119561	18119679	.	+	0	Parent=Os12t0486900-01
Chr12	irgsp1_rep	CDS	18120143	18120569	.	+	1	Parent=Os12t0486900-01
Chr12	irgsp1_rep	three_prime_UTR	18120570	18120679	.	+	.	Parent=Os12t0486900-01
Chr12	irgsp1_rep	mRNA	18172066	18173580	.	+	.	ID=Os12t0487250-01;Name=Os12t0487250-01;Locus_id=Os12g0487250;CGSNL Gene Symbol=AM26;CGSNL Gene Name=ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 26;Oryzabase Gene Symbol Synonym(s)=AM26;Note=Arbuscular mycorrhizal specific marker 26.;Transcript_evidence=AK371805 (DDBJ);ORF_evidence=B7EKH2 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);Oryzabase=8191;TENOR=Os12t0487250-01
Chr12	irgsp1_rep	CDS	18172066	18172939	.	+	0	Parent=Os12t0487250-01
Chr12	irgsp1_rep	CDS	18173005	18173148	.	+	2	Parent=Os12t0487250-01
Chr12	irgsp1_rep	CDS	18173246	18173580	.	+	2	Parent=Os12t0487250-01
Chr12	irgsp1_rep	mRNA	18195150	18201565	.	+	.	ID=Os12t0487500-01;Name=Os12t0487500-01;Locus_id=Os12g0487500;Note=Hypothetical conserved gene.;Transcript_evidence=AK111858 (DDBJ%2C Best hit);ORF_evidence=B8BPP7 (UniProt);NIAS_FLcDNA=J033001A23;Expression=AK111858;TENOR=Os12t0487500-01;KEGG=Os12t0487500-01
Chr12	irgsp1_rep	five_prime_UTR	18195150	18195151	.	+	.	Parent=Os12t0487500-01
Chr12	irgsp1_rep	CDS	18195152	18195477	.	+	0	Parent=Os12t0487500-01
Chr12	irgsp1_rep	CDS	18195560	18195581	.	+	1	Parent=Os12t0487500-01
Chr12	irgsp1_rep	CDS	18195665	18195667	.	+	0	Parent=Os12t0487500-01
Chr12	irgsp1_rep	three_prime_UTR	18195668	18195712	.	+	.	Parent=Os12t0487500-01
Chr12	irgsp1_rep	three_prime_UTR	18195797	18195864	.	+	.	Parent=Os12t0487500-01
Chr12	irgsp1_rep	three_prime_UTR	18196679	18196723	.	+	.	Parent=Os12t0487500-01
Chr12	irgsp1_rep	three_prime_UTR	18201155	18201565	.	+	.	Parent=Os12t0487500-01
Chr12	irgsp1_rep	mRNA	18208802	18209572	.	-	.	ID=Os12t0487750-01;Name=Os12t0487750-01;Locus_id=Os12g0487750;Note=Non-protein coding transcript.;Transcript_evidence=AK240841 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J065016L02;TENOR=Os12t0487750-01
Chr12	irgsp1_rep	exon	18208802	18209572	.	-	.	Parent=Os12t0487750-01
Chr12	irgsp1_rep	mRNA	18272198	18273207	.	-	.	ID=Os12t0487832-00;Name=Os12t0487832-00;Locus_id=Os12g0487832;Note=Hypothetical conserved gene.;Transcript_evidence=BT065693 (DDBJ);ORF_evidence=Q0DLG0 (UniProt);TENOR=Os12t0487832-00;KEGG=Os12t0487832-00
Chr12	irgsp1_rep	CDS	18272488	18273207	.	-	0	Parent=Os12t0487832-00
Chr12	irgsp1_rep	three_prime_UTR	18272472	18272487	.	-	.	Parent=Os12t0487832-00
Chr12	irgsp1_rep	three_prime_UTR	18272198	18272390	.	-	.	Parent=Os12t0487832-00
Chr12	irgsp1_rep	mRNA	18287172	18287652	.	+	.	ID=Os12t0488300-00;Name=Os12t0488300-00;Locus_id=Os12g0488300;Note=Similar to ribosomal protein L22.;Transcript_evidence=DQ245870 (DDBJ);ORF_evidence=NP_039425.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: large ribosomal subunit (GO:0015934),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L22/L17 (IPR001063),Ribosomal protein L22%2C bacterial-type (IPR005727);TENOR=Os12t0488300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	18287172	18287208	.	+	.	Parent=Os12t0488300-00
Chr12	irgsp1_rep	CDS	18287209	18287652	.	+	0	Parent=Os12t0488300-00
Chr12	irgsp1_rep	mRNA	18301069	18305644	.	+	.	ID=Os12t0488600-00;Name=Os12t0488600-00;Locus_id=Os12g0488600;Note=Similar to Ribosomal protein L4/L1 family protein.;Transcript_evidence=tplb0047i04 (Wheat FLcDNA);ORF_evidence=Q2QQM8 (UniProt);TENOR=Os12t0488600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	18301069	18301350	.	+	0	Parent=Os12t0488600-00
Chr12	irgsp1_rep	CDS	18302772	18302889	.	+	0	Parent=Os12t0488600-00
Chr12	irgsp1_rep	CDS	18303351	18303500	.	+	2	Parent=Os12t0488600-00
Chr12	irgsp1_rep	CDS	18304236	18304279	.	+	2	Parent=Os12t0488600-00
Chr12	irgsp1_rep	three_prime_UTR	18304280	18304338	.	+	.	Parent=Os12t0488600-00
Chr12	irgsp1_rep	three_prime_UTR	18304448	18304567	.	+	.	Parent=Os12t0488600-00
Chr12	irgsp1_rep	three_prime_UTR	18305230	18305403	.	+	.	Parent=Os12t0488600-00
Chr12	irgsp1_rep	three_prime_UTR	18305542	18305644	.	+	.	Parent=Os12t0488600-00
Chr12	irgsp1_rep	mRNA	18308147	18310492	.	+	.	ID=Os12t0488700-00;Name=Os12t0488700-00;Locus_id=Os12g0488700;Note=Protein of unknown function DUF593 domain containing protein.;Transcript_evidence=AK373190 (DDBJ);ORF_evidence=NP_001066790.2 (RefSeq);InterPro=Protein of unknown function DUF593 (IPR007656);TENOR=Os12t0488700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	18308147	18309520	.	+	0	Parent=Os12t0488700-00
Chr12	irgsp1_rep	CDS	18310227	18310273	.	+	0	Parent=Os12t0488700-00
Chr12	irgsp1_rep	CDS	18310384	18310486	.	+	1	Parent=Os12t0488700-00
Chr12	irgsp1_rep	three_prime_UTR	18310487	18310492	.	+	.	Parent=Os12t0488700-00
Chr12	irgsp1_rep	mRNA	18311011	18313079	.	-	.	ID=Os12t0488800-01;Name=Os12t0488800-01;Locus_id=Os12g0488800;Note=RNA polymerase II%2C Rpb4%2C core domain containing protein.;Transcript_evidence=AK064347 (DDBJ%2C Best hit);ORF_evidence=B6T4L2 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Biological Process: cellular metabolic process (GO:0044237),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899);InterPro=RNA polymerase II%2C Rpb4 (IPR005574),RNA polymerase II%2C Rpb4%2C core (IPR006590),HRDC-like (IPR010997);NIAS_FLcDNA=002-107-H12;Expression=AK064347;TENOR=Os12t0488800-01;KEGG=Os12t0488800-01
Chr12	irgsp1_rep	five_prime_UTR	18312911	18313079	.	-	.	Parent=Os12t0488800-01
Chr12	irgsp1_rep	CDS	18312903	18312910	.	-	0	Parent=Os12t0488800-01
Chr12	irgsp1_rep	CDS	18312376	18312493	.	-	1	Parent=Os12t0488800-01
Chr12	irgsp1_rep	CDS	18312112	18312264	.	-	0	Parent=Os12t0488800-01
Chr12	irgsp1_rep	CDS	18311943	18311999	.	-	0	Parent=Os12t0488800-01
Chr12	irgsp1_rep	three_prime_UTR	18311011	18311942	.	-	.	Parent=Os12t0488800-01
Chr12	irgsp1_rep	mRNA	18315197	18319057	.	-	.	ID=Os12t0488900-01;Name=Os12t0488900-01;Locus_id=Os12g0488900;Oryzabase Gene Symbol Synonym(s)=OsPuf4;Oryzabase Gene Name Synonym(s)=RNA-binding protein of the Puf family member 4;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK068902 (DDBJ%2C Best hit);ORF_evidence=B8BPQ1 (UniProt);GO=Molecular Function: RNA binding (GO:0003723),Molecular Function: binding (GO:0005488);InterPro=Pumilio RNA-binding repeat (IPR001313),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023001H05;Oryzabase=9406;Expression=AK068902;TENOR=Os12t0488900-01;KEGG=Os12t0488900-01
Chr12	irgsp1_rep	five_prime_UTR	18318896	18319057	.	-	.	Parent=Os12t0488900-01
Chr12	irgsp1_rep	CDS	18318868	18318895	.	-	0	Parent=Os12t0488900-01
Chr12	irgsp1_rep	CDS	18316583	18318158	.	-	2	Parent=Os12t0488900-01
Chr12	irgsp1_rep	CDS	18316353	18316515	.	-	1	Parent=Os12t0488900-01
Chr12	irgsp1_rep	CDS	18315872	18316035	.	-	0	Parent=Os12t0488900-01
Chr12	irgsp1_rep	CDS	18315533	18315791	.	-	1	Parent=Os12t0488900-01
Chr12	irgsp1_rep	CDS	18315328	18315447	.	-	0	Parent=Os12t0488900-01
Chr12	irgsp1_rep	three_prime_UTR	18315197	18315327	.	-	.	Parent=Os12t0488900-01
Chr12	irgsp1_rep	mRNA	18334665	18342391	.	+	.	ID=Os12t0489100-01;Name=Os12t0489100-01;Locus_id=Os12g0489100;Oryzabase Gene Symbol Synonym(s)=OsM13%2C M13%2C OsM13a%2C OsUBP5-4%2C UBP5-4%2C OsUBP12%2C UBP12;Oryzabase Gene Name Synonym(s)=single domain MDC protein 13%2C single MATH domain containing protein 13%2C ubiquitin-specific processing protease 5-4%2C Ubiquitin-specific protease 12;Note=Similar to Ubiquitin-specific protease 12.;Transcript_evidence=AK059573 (DDBJ%2C Best hit);ORF_evidence=Q2R2A3 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Molecular Function: ubiquitin thiolesterase activity (GO:0004221),Molecular Function: protein binding (GO:0005515);InterPro=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (IPR001394),MATH (IPR002083),TRAF-like (IPR008974),TRAF-type (IPR013322),Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2%2C conserved site (IPR018200);NIAS_FLcDNA=001-030-A04;Oryzabase=21194;Expression=AK059573;TENOR=Os12t0489100-01;KEGG=Os12t0489100-01 (EC:3.1.2.15)
Chr12	irgsp1_rep	five_prime_UTR	18334665	18334845	.	+	.	Parent=Os12t0489100-01
Chr12	irgsp1_rep	CDS	18334846	18334875	.	+	0	Parent=Os12t0489100-01
Chr12	irgsp1_rep	CDS	18335139	18335232	.	+	0	Parent=Os12t0489100-01
Chr12	irgsp1_rep	CDS	18335388	18335538	.	+	2	Parent=Os12t0489100-01
Chr12	irgsp1_rep	CDS	18335642	18335799	.	+	1	Parent=Os12t0489100-01
Chr12	irgsp1_rep	CDS	18337798	18338063	.	+	2	Parent=Os12t0489100-01
Chr12	irgsp1_rep	CDS	18338143	18338361	.	+	0	Parent=Os12t0489100-01
Chr12	irgsp1_rep	CDS	18338427	18338535	.	+	0	Parent=Os12t0489100-01
Chr12	irgsp1_rep	CDS	18338606	18338721	.	+	2	Parent=Os12t0489100-01
Chr12	irgsp1_rep	CDS	18339053	18339151	.	+	0	Parent=Os12t0489100-01
Chr12	irgsp1_rep	CDS	18340565	18340674	.	+	0	Parent=Os12t0489100-01
Chr12	irgsp1_rep	CDS	18341111	18341185	.	+	1	Parent=Os12t0489100-01
Chr12	irgsp1_rep	CDS	18342046	18342124	.	+	1	Parent=Os12t0489100-01
Chr12	irgsp1_rep	CDS	18342245	18342391	.	+	0	Parent=Os12t0489100-01
Chr12	irgsp1_rep	mRNA	18347192	18349239	.	+	.	ID=Os12t0489200-01;Name=Os12t0489200-01;Locus_id=Os12g0489200;Oryzabase Gene Symbol Synonym(s)=OsM13%2C M13%2C OsM13a%2C OsUBP5-4%2C UBP5-4%2C OsUBP12%2C UBP12;Oryzabase Gene Name Synonym(s)=single domain MDC protein 13%2C single MATH domain containing protein 13%2C ubiquitin-specific processing protease 5-4%2C Ubiquitin-specific protease 12;Note=Ubiquitin-specific protease 12.;Transcript_evidence=AK058717 (DDBJ%2C Best hit);ORF_evidence=B0BLB2 (UniProt);NIAS_FLcDNA=001-019-E02;Oryzabase=21194;TENOR=Os12t0489200-01;KEGG=Os12t0489200-01
Chr12	irgsp1_rep	CDS	18347192	18347281	.	+	0	Parent=Os12t0489200-01
Chr12	irgsp1_rep	CDS	18348680	18348721	.	+	0	Parent=Os12t0489200-01
Chr12	irgsp1_rep	three_prime_UTR	18348722	18349239	.	+	.	Parent=Os12t0489200-01
Chr12	irgsp1_rep	mRNA	18351588	18353679	.	-	.	ID=Os12t0489300-01;Name=Os12t0489300-01;Locus_id=Os12g0489300;CGSNL Gene Symbol=ALBA9;CGSNL Gene Name=ACETYLATION LOWERS BINDING AFFINITY 9;Oryzabase Gene Symbol Synonym(s)=OsAlba9%2C Alba9;Oryzabase Gene Name Synonym(s)=acetylation lowers binding affinity protein 9%2C acetylation lowers binding affinity 9%2C Alba family protein 9;Note=Alba%2C DNA/RNA-binding protein family protein.;Transcript_evidence=AK071524 (DDBJ%2C Best hit);ORF_evidence=XP_002884455.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=DNA/RNA-binding protein Alba-like (IPR002775),Uncharacterised conserved protein UCP030333%2C DNA/RNA-binding Alba-related (IPR014560);NIAS_FLcDNA=J023100D18;Oryzabase=22409;Expression=AK071524;TENOR=Os12t0489300-01;KEGG=Os12t0489300-01
Chr12	irgsp1_rep	five_prime_UTR	18353580	18353679	.	-	.	Parent=Os12t0489300-01
Chr12	irgsp1_rep	CDS	18353346	18353579	.	-	0	Parent=Os12t0489300-01
Chr12	irgsp1_rep	CDS	18352727	18352775	.	-	0	Parent=Os12t0489300-01
Chr12	irgsp1_rep	CDS	18352481	18352543	.	-	2	Parent=Os12t0489300-01
Chr12	irgsp1_rep	CDS	18352267	18352331	.	-	2	Parent=Os12t0489300-01
Chr12	irgsp1_rep	CDS	18352038	18352136	.	-	0	Parent=Os12t0489300-01
Chr12	irgsp1_rep	three_prime_UTR	18351588	18352037	.	-	.	Parent=Os12t0489300-01
Chr12	irgsp1_rep	mRNA	18353983	18354542	.	+	.	ID=Os12t0489400-01;Name=Os12t0489400-01;Locus_id=Os12g0489400;Note=Hypothetical protein.;Transcript_evidence=AK062351 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-101-G05;Expression=AK062351;TENOR=Os12t0489400-01;KEGG=Os12t0489400-01
Chr12	irgsp1_rep	five_prime_UTR	18353983	18354031	.	+	.	Parent=Os12t0489400-01
Chr12	irgsp1_rep	CDS	18354032	18354319	.	+	0	Parent=Os12t0489400-01
Chr12	irgsp1_rep	three_prime_UTR	18354320	18354542	.	+	.	Parent=Os12t0489400-01
Chr12	irgsp1_rep	mRNA	18354071	18355704	.	+	.	ID=Os12t0489400-02;Name=Os12t0489400-02;Locus_id=Os12g0489400;Note=Hypothetical gene.;Transcript_evidence=AK120086 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013020J11;Expression=AK120086;TENOR=Os12t0489400-02;KEGG=Os12t0489400-02
Chr12	irgsp1_rep	CDS	18354071	18354319	.	+	0	Parent=Os12t0489400-02
Chr12	irgsp1_rep	three_prime_UTR	18354320	18355704	.	+	.	Parent=Os12t0489400-02
Chr12	irgsp1_rep	mRNA	18369705	18373748	.	+	.	ID=Os12t0489800-01;Name=Os12t0489800-01;Locus_id=Os12g0489800;Note=Similar to NBS-LRR protein (Fragment).;Transcript_evidence=AK102385 (DDBJ%2C Best hit);ORF_evidence=A2ZKM3 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J033092D07;Expression=AK102385;TENOR=Os12t0489800-01;KEGG=Os12t0489800-01
Chr12	irgsp1_rep	five_prime_UTR	18369705	18369852	.	+	.	Parent=Os12t0489800-01
Chr12	irgsp1_rep	five_prime_UTR	18370483	18370596	.	+	.	Parent=Os12t0489800-01
Chr12	irgsp1_rep	CDS	18370597	18371874	.	+	0	Parent=Os12t0489800-01
Chr12	irgsp1_rep	three_prime_UTR	18371875	18373748	.	+	.	Parent=Os12t0489800-01
Chr12	irgsp1_rep	mRNA	18383645	18385277	.	+	.	ID=Os12t0490000-01;Name=Os12t0490000-01;Locus_id=Os12g0490000;Note=Hypothetical conserved gene.;Transcript_evidence=AK288147 (DDBJ%2C Best hit);ORF_evidence=Q2QQL6 (UniProt);InterPro=Mitochodrial transcription termination factor-related (IPR003690);NIAS_FLcDNA=J080315A07;TENOR=Os12t0490000-01;KEGG=Os12t0490000-01
Chr12	irgsp1_rep	five_prime_UTR	18383645	18383734	.	+	.	Parent=Os12t0490000-01
Chr12	irgsp1_rep	CDS	18383735	18384733	.	+	0	Parent=Os12t0490000-01
Chr12	irgsp1_rep	three_prime_UTR	18384734	18385277	.	+	.	Parent=Os12t0490000-01
Chr12	irgsp1_rep	mRNA	18386470	18387536	.	+	.	ID=Os12t0490050-01;Name=Os12t0490050-01;Locus_id=Os12g0490050;Note=Conserved hypothetical protein.;Transcript_evidence=AK243134 (DDBJ%2C Best hit);ORF_evidence=NP_001176958.1 (RefSeq);NIAS_FLcDNA=J100030D22;TENOR=Os12t0490050-01;KEGG=Os12t0490050-01
Chr12	irgsp1_rep	five_prime_UTR	18386470	18386523	.	+	.	Parent=Os12t0490050-01
Chr12	irgsp1_rep	CDS	18386524	18386610	.	+	0	Parent=Os12t0490050-01
Chr12	irgsp1_rep	CDS	18386698	18386754	.	+	0	Parent=Os12t0490050-01
Chr12	irgsp1_rep	CDS	18387150	18387269	.	+	0	Parent=Os12t0490050-01
Chr12	irgsp1_rep	three_prime_UTR	18387270	18387536	.	+	.	Parent=Os12t0490050-01
Chr12	irgsp1_rep	mRNA	18388482	18391056	.	+	.	ID=Os12t0490100-01;Name=Os12t0490100-01;Locus_id=Os12g0490100;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK242863 (DDBJ%2C Best hit);ORF_evidence=NP_001176959.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J090074J03;TENOR=Os12t0490100-01;KEGG=Os12t0490100-01
Chr12	irgsp1_rep	five_prime_UTR	18388482	18388579	.	+	.	Parent=Os12t0490100-01
Chr12	irgsp1_rep	CDS	18388580	18389935	.	+	0	Parent=Os12t0490100-01
Chr12	irgsp1_rep	three_prime_UTR	18389936	18391056	.	+	.	Parent=Os12t0490100-01
Chr12	irgsp1_rep	mRNA	18412383	18413445	.	+	.	ID=Os12t0490566-00;Name=Os12t0490566-00;Locus_id=Os12g0490566;Note=Similar to embryo-sac basal-endosperm-layer embryo-surrounding-region2.;Transcript_evidence=AJ437284 (DDBJ);ORF_evidence=NP_001105157.1 (RefSeq);InterPro=Glucoamylase%2C putatuve (IPR004314);TENOR=Os12t0490566-00
Chr12	irgsp1_rep	CDS	18412383	18412574	.	+	0	Parent=Os12t0490566-00
Chr12	irgsp1_rep	CDS	18412817	18412954	.	+	0	Parent=Os12t0490566-00
Chr12	irgsp1_rep	CDS	18413203	18413445	.	+	0	Parent=Os12t0490566-00
Chr12	irgsp1_rep	mRNA	18509843	18528700	.	-	.	ID=Os12t0491800-01;Name=Os12t0491800-01;Locus_id=Os12g0491800;CGSNL Gene Symbol=KSL10;CGSNL Gene Name=KAURENE SYNTHASE-LIKE 10;Oryzabase Gene Symbol Synonym(s)=OsKSL10%2C KS10%2C OsKS10%2C OsTPS33;Oryzabase Gene Name Synonym(s)=Ent-kaurene synthase 10%2C "Ent-sandaracopimara-8(14)%2C 15-diene synthase"%2C Ent-sandaracopimaradiene synthase%2C Ent-kaurene synthase-like 10%2C ent-sandaracopimaradiene synthase%2C ent-pimaradiene synthase%2C terpene synthase 33;Note=Similar to Ent-kaurene synthase 1A.;Transcript_evidence=AK072461 (DDBJ%2C Best hit);ORF_evidence=Q2QQJ5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: lyase activity (GO:0016829);InterPro=Terpene synthase-like (IPR001906),Terpene synthase%2C metal-binding domain (IPR005630),Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (IPR008930),Terpenoid synthase (IPR008949);NIAS_FLcDNA=J023116G20;Oryzabase=7283;Expression=AK072461;TENOR=Os12t0491800-01;KEGG=Os12t0491800-01
Chr12	irgsp1_rep	five_prime_UTR	18528595	18528700	.	-	.	Parent=Os12t0491800-01
Chr12	irgsp1_rep	five_prime_UTR	18526754	18526762	.	-	.	Parent=Os12t0491800-01
Chr12	irgsp1_rep	CDS	18526642	18526753	.	-	0	Parent=Os12t0491800-01
Chr12	irgsp1_rep	CDS	18524724	18524782	.	-	2	Parent=Os12t0491800-01
Chr12	irgsp1_rep	CDS	18522288	18522573	.	-	0	Parent=Os12t0491800-01
Chr12	irgsp1_rep	CDS	18521432	18521612	.	-	2	Parent=Os12t0491800-01
Chr12	irgsp1_rep	CDS	18513969	18514186	.	-	1	Parent=Os12t0491800-01
Chr12	irgsp1_rep	CDS	18512936	18513056	.	-	2	Parent=Os12t0491800-01
Chr12	irgsp1_rep	CDS	18512721	18512818	.	-	1	Parent=Os12t0491800-01
Chr12	irgsp1_rep	CDS	18512417	18512628	.	-	2	Parent=Os12t0491800-01
Chr12	irgsp1_rep	CDS	18512041	18512153	.	-	0	Parent=Os12t0491800-01
Chr12	irgsp1_rep	CDS	18511851	18511946	.	-	1	Parent=Os12t0491800-01
Chr12	irgsp1_rep	CDS	18511282	18511500	.	-	1	Parent=Os12t0491800-01
Chr12	irgsp1_rep	CDS	18510982	18511123	.	-	1	Parent=Os12t0491800-01
Chr12	irgsp1_rep	CDS	18510090	18510680	.	-	0	Parent=Os12t0491800-01
Chr12	irgsp1_rep	three_prime_UTR	18509843	18510089	.	-	.	Parent=Os12t0491800-01
Chr12	irgsp1_rep	mRNA	18565342	18566130	.	+	.	ID=Os12t0492600-01;Name=Os12t0492600-01;Locus_id=Os12g0492600;Note=Hypothetical gene.;Transcript_evidence=AK109656 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-140-F05;Expression=AK109656;TENOR=Os12t0492600-01;KEGG=Os12t0492600-01
Chr12	irgsp1_rep	five_prime_UTR	18565342	18565342	.	+	.	Parent=Os12t0492600-01
Chr12	irgsp1_rep	CDS	18565343	18565576	.	+	0	Parent=Os12t0492600-01
Chr12	irgsp1_rep	three_prime_UTR	18565577	18566130	.	+	.	Parent=Os12t0492600-01
Chr12	irgsp1_rep	mRNA	18576987	18580499	.	+	.	ID=Os12t0492900-01;Name=Os12t0492900-01;Locus_id=Os12g0492900;Oryzabase Gene Symbol Synonym(s)=OsFbox651%2C Os_F0018;Oryzabase Gene Name Synonym(s)=F-box protein 651;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK106832 (DDBJ%2C Best hit);ORF_evidence=A3CHH2 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),F-box associated domain%2C type 1 (IPR006527),F-box associated interaction domain (IPR017451),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-116-F10;Oryzabase=17411;Expression=AK106832;TENOR=Os12t0492900-01;KEGG=Os12t0492900-01
Chr12	irgsp1_rep	five_prime_UTR	18576987	18577962	.	+	.	Parent=Os12t0492900-01
Chr12	irgsp1_rep	CDS	18577963	18578865	.	+	0	Parent=Os12t0492900-01
Chr12	irgsp1_rep	CDS	18580007	18580375	.	+	0	Parent=Os12t0492900-01
Chr12	irgsp1_rep	three_prime_UTR	18580376	18580499	.	+	.	Parent=Os12t0492900-01
Chr12	irgsp1_rep	mRNA	18618482	18621147	.	+	.	ID=Os12t0493900-01;Name=Os12t0493900-01;Locus_id=Os12g0493900;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK121028 (DDBJ%2C Best hit);ORF_evidence=B6TK32 (UniProt);GO=Molecular Function: RNA binding (GO:0003723),Molecular Function: binding (GO:0005488);InterPro=Pumilio RNA-binding repeat (IPR001313),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023050G17;Expression=AK121028;TENOR=Os12t0493900-01;KEGG=Os12t0493900-01
Chr12	irgsp1_rep	five_prime_UTR	18618482	18618611	.	+	.	Parent=Os12t0493900-01
Chr12	irgsp1_rep	CDS	18618612	18619480	.	+	0	Parent=Os12t0493900-01
Chr12	irgsp1_rep	CDS	18619590	18619752	.	+	1	Parent=Os12t0493900-01
Chr12	irgsp1_rep	CDS	18620094	18620257	.	+	0	Parent=Os12t0493900-01
Chr12	irgsp1_rep	CDS	18620371	18620629	.	+	1	Parent=Os12t0493900-01
Chr12	irgsp1_rep	CDS	18620723	18620830	.	+	0	Parent=Os12t0493900-01
Chr12	irgsp1_rep	three_prime_UTR	18620831	18621147	.	+	.	Parent=Os12t0493900-01
Chr12	irgsp1_rep	mRNA	18721650	18724616	.	+	.	ID=Os12t0495525-00;Name=Os12t0495525-00;Locus_id=Os12g0495525;Note=Conserved hypothetical protein.;Transcript_evidence=CT837914 (DDBJ%2C Best hit);ORF_evidence=Q69LU9 (UniProt);TENOR=Os12t0495525-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	18721650	18721969	.	+	.	Parent=Os12t0495525-00
Chr12	irgsp1_rep	five_prime_UTR	18722971	18723032	.	+	.	Parent=Os12t0495525-00
Chr12	irgsp1_rep	five_prime_UTR	18724307	18724352	.	+	.	Parent=Os12t0495525-00
Chr12	irgsp1_rep	CDS	18724353	18724430	.	+	0	Parent=Os12t0495525-00
Chr12	irgsp1_rep	three_prime_UTR	18724431	18724616	.	+	.	Parent=Os12t0495525-00
Chr12	irgsp1_rep	mRNA	18757947	18764040	.	-	.	ID=Os12t0495600-01;Name=Os12t0495600-01;Locus_id=Os12g0495600;Note=NB-ARC domain containing protein.;Transcript_evidence=AK110307 (DDBJ%2C Best hit);ORF_evidence=B8BPR6 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=002-164-A12;Expression=AK110307;TENOR=Os12t0495600-01;KEGG=Os12t0495600-01
Chr12	irgsp1_rep	five_prime_UTR	18763932	18764040	.	-	.	Parent=Os12t0495600-01
Chr12	irgsp1_rep	CDS	18763129	18763931	.	-	0	Parent=Os12t0495600-01
Chr12	irgsp1_rep	CDS	18758337	18760341	.	-	1	Parent=Os12t0495600-01
Chr12	irgsp1_rep	three_prime_UTR	18757947	18758336	.	-	.	Parent=Os12t0495600-01
Chr12	irgsp1_rep	mRNA	18851047	18852758	.	-	.	ID=Os12t0496700-00;Name=Os12t0496700-00;Locus_id=Os12g0496700;Oryzabase Gene Symbol Synonym(s)=OsFbox655%2C Os_F0116;Oryzabase Gene Name Synonym(s)=F-box protein 655;Note=Similar to F-box domain containing protein%2C expressed.;Transcript_evidence=tplb0033b07 (Wheat FLcDNA);ORF_evidence=Q2QQE3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),FBD-like (IPR006566),FBD (IPR013596),F-box domain%2C Skp2-like (IPR022364);Oryzabase=17415;TENOR=Os12t0496700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	18851754	18852758	.	-	0	Parent=Os12t0496700-00
Chr12	irgsp1_rep	CDS	18851536	18851670	.	-	0	Parent=Os12t0496700-00
Chr12	irgsp1_rep	CDS	18851065	18851439	.	-	0	Parent=Os12t0496700-00
Chr12	irgsp1_rep	three_prime_UTR	18851047	18851064	.	-	.	Parent=Os12t0496700-00
Chr12	irgsp1_rep	mRNA	18855877	18860581	.	-	.	ID=Os12t0496900-01;Name=Os12t0496900-01;Locus_id=Os12g0496900;CGSNL Gene Symbol=GIF2;CGSNL Gene Name=GRF-INTERACTING FACTOR 2;Oryzabase Gene Symbol Synonym(s)=OsGIF2;Oryzabase Gene Name Synonym(s)=GRF-interacting factor 2;Note=SSXT family protein.;Transcript_evidence=AK105366 (DDBJ%2C Best hit);ORF_evidence=B6UHZ8 (UniProt);InterPro=SSXT (IPR007726);NIAS_FLcDNA=001-119-G03;Oryzabase=15528;Expression=AK105366;TENOR=Os12t0496900-01;KEGG=Os12t0496900-01
Chr12	irgsp1_rep	five_prime_UTR	18860480	18860581	.	-	.	Parent=Os12t0496900-01
Chr12	irgsp1_rep	CDS	18860405	18860479	.	-	0	Parent=Os12t0496900-01
Chr12	irgsp1_rep	CDS	18858681	18858757	.	-	0	Parent=Os12t0496900-01
Chr12	irgsp1_rep	CDS	18856460	18856544	.	-	1	Parent=Os12t0496900-01
Chr12	irgsp1_rep	CDS	18856069	18856389	.	-	0	Parent=Os12t0496900-01
Chr12	irgsp1_rep	three_prime_UTR	18855877	18856068	.	-	.	Parent=Os12t0496900-01
Chr12	irgsp1_rep	mRNA	18876115	18879035	.	+	.	ID=Os12t0497300-01;Name=Os12t0497300-01;Locus_id=Os12g0497300;RAP-DB Gene Symbol Synonym(s)=RAD51A2%2C OsRad51A2%2C OsRAD51;RAP-DB Gene Name Synonym(s)=DNA REPAIR PROTEIN RAD51A2;CGSNL Gene Symbol=RAD51A2;CGSNL Gene Name=DNA REPAIR PROTEIN RAD51A2;Oryzabase Gene Symbol Synonym(s)=OsRad51A2%2C OsRAD51;Note=DNA repair protein RAD51%2C Homologous pairing%2C DNA double strand break (DSB) repair and homologous recombination;Transcript_evidence=AB080264;ORF_evidence=Q8RV34;GO=Biological Process: double-strand break repair via homologous recombination (GO:0000724),Biological Process: DNA metabolic process (GO:0006259),Biological Process: DNA repair (GO:0006281),Biological Process: mitotic recombination-dependent replication fork processing (GO:1990426),Molecular Function: recombinase activity (GO:0000150),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: DNA binding (GO:0003677),Molecular Function: double-stranded DNA binding (GO:0003690),Molecular Function: single-stranded DNA binding (GO:0003697),Molecular Function: ATP binding (GO:0005524),Molecular Function: DNA-dependent ATPase activity (GO:0008094);InterPro=DNA recombination and repair protein%2C RecA-like (IPR016467),DNA recombination/repair protein Rad51 (IPR011941),DNA repair Rad51/transcription factor NusA%2C alpha-helical (IPR010995),DNA recombination and repair protein Rad51-like%2C C-terminal (IPR013632),P-loop containing nucleoside triphosphate hydrolase (IPR027417),DNA recombination and repair protein RecA-like%2C ATP-binding domain (IPR020588),Rad51/DMC1/RadA (IPR033925),AAA+ ATPase domain (IPR003593),DNA recombination and repair protein RecA%2C monomer-monomer interface (IPR020587);Manual Curation=December 14%2C 2016;Literature_PMID=24124491;Oryzabase=9118;Expression=AB080264;TENOR=Os12t0497300-00;KEGG=Os12t0497300-00
Chr12	irgsp1_rep	CDS	18876115	18876210	.	+	0	Parent=Os12t0497300-01
Chr12	irgsp1_rep	CDS	18876823	18876965	.	+	0	Parent=Os12t0497300-01
Chr12	irgsp1_rep	CDS	18877071	18877183	.	+	1	Parent=Os12t0497300-01
Chr12	irgsp1_rep	CDS	18877298	18877389	.	+	2	Parent=Os12t0497300-01
Chr12	irgsp1_rep	CDS	18877576	18877670	.	+	0	Parent=Os12t0497300-01
Chr12	irgsp1_rep	CDS	18877744	18877855	.	+	1	Parent=Os12t0497300-01
Chr12	irgsp1_rep	CDS	18878038	18878169	.	+	0	Parent=Os12t0497300-01
Chr12	irgsp1_rep	CDS	18878354	18878472	.	+	0	Parent=Os12t0497300-01
Chr12	irgsp1_rep	CDS	18878635	18878758	.	+	1	Parent=Os12t0497300-01
Chr12	irgsp1_rep	three_prime_UTR	18878759	18879035	.	+	.	Parent=Os12t0497300-01
Chr12	irgsp1_rep	mRNA	18879433	18882393	.	-	.	ID=Os12t0497400-01;Name=Os12t0497400-01;Locus_id=Os12g0497400;Note=Similar to Initiation factor 2 subunit family protein%2C expressed.;Transcript_evidence=AK068908 (DDBJ%2C Best hit);ORF_evidence=Q2QQD9 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237);InterPro=Initiation factor 2B-related (IPR000649);NIAS_FLcDNA=J023003C02;Expression=AK068908;TENOR=Os12t0497400-01;KEGG=Os12t0497400-01
Chr12	irgsp1_rep	five_prime_UTR	18882364	18882393	.	-	.	Parent=Os12t0497400-01
Chr12	irgsp1_rep	CDS	18881965	18882363	.	-	0	Parent=Os12t0497400-01
Chr12	irgsp1_rep	CDS	18881132	18881284	.	-	0	Parent=Os12t0497400-01
Chr12	irgsp1_rep	CDS	18880906	18881047	.	-	0	Parent=Os12t0497400-01
Chr12	irgsp1_rep	CDS	18880088	18880329	.	-	2	Parent=Os12t0497400-01
Chr12	irgsp1_rep	CDS	18879631	18879837	.	-	0	Parent=Os12t0497400-01
Chr12	irgsp1_rep	three_prime_UTR	18879433	18879630	.	-	.	Parent=Os12t0497400-01
Chr12	irgsp1_rep	mRNA	18879411	18882363	.	-	.	ID=Os12t0497400-02;Name=Os12t0497400-02;Locus_id=Os12g0497400;Note=Initiation factor 2B related family protein.;Transcript_evidence=AK071243 (DDBJ%2C Best hit);ORF_evidence=Q2QQD9 (UniProt);GO=Biological Process: cellular metabolic process (GO:0044237);InterPro=Initiation factor 2B-related (IPR000649);NIAS_FLcDNA=J023087F24;Expression=AK071243;TENOR=Os12t0497400-02;KEGG=Os12t0497400-02
Chr12	irgsp1_rep	CDS	18882283	18882363	.	-	0	Parent=Os12t0497400-02
Chr12	irgsp1_rep	CDS	18881965	18882039	.	-	0	Parent=Os12t0497400-02
Chr12	irgsp1_rep	CDS	18881132	18881284	.	-	0	Parent=Os12t0497400-02
Chr12	irgsp1_rep	CDS	18880906	18881047	.	-	0	Parent=Os12t0497400-02
Chr12	irgsp1_rep	CDS	18880088	18880329	.	-	2	Parent=Os12t0497400-02
Chr12	irgsp1_rep	CDS	18879631	18879837	.	-	0	Parent=Os12t0497400-02
Chr12	irgsp1_rep	three_prime_UTR	18879411	18879630	.	-	.	Parent=Os12t0497400-02
Chr12	irgsp1_rep	mRNA	18879509	18882186	.	+	.	ID=Os12t0497544-00;Name=Os12t0497544-00;Locus_id=Os12g0497544;Note=Hypothetical gene.;Transcript_evidence=BT018602 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0497544-00;KEGG=Os12t0497544-00
Chr12	irgsp1_rep	five_prime_UTR	18879509	18879830	.	+	.	Parent=Os12t0497544-00
Chr12	irgsp1_rep	five_prime_UTR	18880076	18880334	.	+	.	Parent=Os12t0497544-00
Chr12	irgsp1_rep	five_prime_UTR	18880916	18881036	.	+	.	Parent=Os12t0497544-00
Chr12	irgsp1_rep	five_prime_UTR	18881127	18881247	.	+	.	Parent=Os12t0497544-00
Chr12	irgsp1_rep	CDS	18881248	18881270	.	+	0	Parent=Os12t0497544-00
Chr12	irgsp1_rep	CDS	18881952	18882186	.	+	1	Parent=Os12t0497544-00
Chr12	irgsp1_rep	mRNA	18908849	18912598	.	-	.	ID=Os12t0497994-00;Name=Os12t0497994-00;Locus_id=Os12g0497994;Note=Non-protein coding transcript.;Transcript_evidence=tplb0051f06 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os12t0497994-00
Chr12	irgsp1_rep	exon	18912328	18912598	.	-	.	Parent=Os12t0497994-00
Chr12	irgsp1_rep	exon	18911805	18912042	.	-	.	Parent=Os12t0497994-00
Chr12	irgsp1_rep	exon	18911542	18911732	.	-	.	Parent=Os12t0497994-00
Chr12	irgsp1_rep	exon	18911358	18911454	.	-	.	Parent=Os12t0497994-00
Chr12	irgsp1_rep	exon	18911170	18911276	.	-	.	Parent=Os12t0497994-00
Chr12	irgsp1_rep	exon	18910829	18910978	.	-	.	Parent=Os12t0497994-00
Chr12	irgsp1_rep	exon	18910563	18910743	.	-	.	Parent=Os12t0497994-00
Chr12	irgsp1_rep	exon	18908849	18909190	.	-	.	Parent=Os12t0497994-00
Chr12	irgsp1_rep	mRNA	18908884	18912892	.	+	.	ID=Os12t0498300-01;Name=Os12t0498300-01;Locus_id=Os12g0498300;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK243569 (DDBJ%2C Best hit);ORF_evidence=Q2QQD3 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40/YVTN repeat-like-containing domain (IPR015943);NIAS_FLcDNA=J100081O10;TENOR=Os12t0498300-01;KEGG=Os12t0498300-01
Chr12	irgsp1_rep	five_prime_UTR	18908884	18908995	.	+	.	Parent=Os12t0498300-01
Chr12	irgsp1_rep	CDS	18908996	18909256	.	+	0	Parent=Os12t0498300-01
Chr12	irgsp1_rep	CDS	18910587	18910734	.	+	0	Parent=Os12t0498300-01
Chr12	irgsp1_rep	CDS	18910825	18910975	.	+	2	Parent=Os12t0498300-01
Chr12	irgsp1_rep	CDS	18911169	18911294	.	+	1	Parent=Os12t0498300-01
Chr12	irgsp1_rep	CDS	18911378	18911458	.	+	1	Parent=Os12t0498300-01
Chr12	irgsp1_rep	CDS	18911546	18911738	.	+	1	Parent=Os12t0498300-01
Chr12	irgsp1_rep	CDS	18911813	18912077	.	+	0	Parent=Os12t0498300-01
Chr12	irgsp1_rep	CDS	18912359	18912600	.	+	2	Parent=Os12t0498300-01
Chr12	irgsp1_rep	three_prime_UTR	18912601	18912892	.	+	.	Parent=Os12t0498300-01
Chr12	irgsp1_rep	mRNA	18913320	18915680	.	-	.	ID=Os12t0498400-01;Name=Os12t0498400-01;Locus_id=Os12g0498400;Note=Septum formation topological specificity factor MinE family protein.;Transcript_evidence=AK070044 (DDBJ%2C Best hit);ORF_evidence=Q45RS0 (UniProt);GO=Biological Process: regulation of barrier septum formation (GO:0032955),Biological Process: cell division (GO:0051301);InterPro=Septum formation topological specificity factor MinE (IPR005527);NIAS_FLcDNA=J023038J16;Expression=AK070044;TENOR=Os12t0498400-01;KEGG=Os12t0498400-01
Chr12	irgsp1_rep	five_prime_UTR	18915617	18915680	.	-	.	Parent=Os12t0498400-01
Chr12	irgsp1_rep	CDS	18915500	18915616	.	-	0	Parent=Os12t0498400-01
Chr12	irgsp1_rep	CDS	18913547	18914140	.	-	0	Parent=Os12t0498400-01
Chr12	irgsp1_rep	three_prime_UTR	18913320	18913546	.	-	.	Parent=Os12t0498400-01
Chr12	irgsp1_rep	mRNA	18913299	18915653	.	-	.	ID=Os12t0498400-02;Name=Os12t0498400-02;Locus_id=Os12g0498400;Note=Septum formation topological specificity factor MinE family protein.;Transcript_evidence=AK058897 (DDBJ%2C Best hit);ORF_evidence=Q45RS0 (UniProt);GO=Biological Process: regulation of barrier septum formation (GO:0032955),Biological Process: cell division (GO:0051301);InterPro=Septum formation topological specificity factor MinE (IPR005527);NIAS_FLcDNA=001-007-H02;TENOR=Os12t0498400-02
Chr12	irgsp1_rep	five_prime_UTR	18915617	18915653	.	-	.	Parent=Os12t0498400-02
Chr12	irgsp1_rep	CDS	18915500	18915616	.	-	0	Parent=Os12t0498400-02
Chr12	irgsp1_rep	CDS	18913547	18914140	.	-	0	Parent=Os12t0498400-02
Chr12	irgsp1_rep	three_prime_UTR	18913299	18913546	.	-	.	Parent=Os12t0498400-02
Chr12	irgsp1_rep	mRNA	18918241	18920690	.	-	.	ID=Os12t0498500-01;Name=Os12t0498500-01;Locus_id=Os12g0498500;Note=Similar to DnaJ domain containing protein%2C expressed.;Transcript_evidence=AK241571 (DDBJ%2C Best hit);ORF_evidence=Q2QQD1 (UniProt);GO=Molecular Function: heat shock protein binding (GO:0031072);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623);NIAS_FLcDNA=J065179M03;TENOR=Os12t0498500-01;KEGG=Os12t0498500-01
Chr12	irgsp1_rep	five_prime_UTR	18920631	18920690	.	-	.	Parent=Os12t0498500-01
Chr12	irgsp1_rep	CDS	18920306	18920630	.	-	0	Parent=Os12t0498500-01
Chr12	irgsp1_rep	CDS	18919880	18919941	.	-	2	Parent=Os12t0498500-01
Chr12	irgsp1_rep	CDS	18918941	18919030	.	-	0	Parent=Os12t0498500-01
Chr12	irgsp1_rep	CDS	18918713	18918847	.	-	0	Parent=Os12t0498500-01
Chr12	irgsp1_rep	CDS	18918421	18918516	.	-	0	Parent=Os12t0498500-01
Chr12	irgsp1_rep	three_prime_UTR	18918241	18918420	.	-	.	Parent=Os12t0498500-01
Chr12	irgsp1_rep	mRNA	18928857	18931566	.	+	.	ID=Os12t0498650-00;Name=Os12t0498650-00;Locus_id=Os12g0498650;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK375837 (DDBJ);ORF_evidence=Q2QQD0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Leucine-rich repeat%2C typical subtype (IPR003591),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os12t0498650-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	18928857	18930924	.	+	0	Parent=Os12t0498650-00
Chr12	irgsp1_rep	CDS	18931154	18931566	.	+	2	Parent=Os12t0498650-00
Chr12	irgsp1_rep	mRNA	18932890	18936001	.	+	.	ID=Os12t0498700-01;Name=Os12t0498700-01;Locus_id=Os12g0498700;Note=Mannosyltransferase%2C PIG-V family protein.;Transcript_evidence=AK073582 (DDBJ%2C Best hit);ORF_evidence=NP_172652.2 (RefSeq);GO=Biological Process: GPI anchor biosynthetic process (GO:0006506),Cellular Component: endoplasmic reticulum membrane (GO:0005789),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=GPI mannosyltransferase 2-like (IPR007315);NIAS_FLcDNA=J033051C07;Expression=AK073582;TENOR=Os12t0498700-01;KEGG=Os12t0498700-01 (EC:2.4.1.-)
Chr12	irgsp1_rep	five_prime_UTR	18932890	18932930	.	+	.	Parent=Os12t0498700-01
Chr12	irgsp1_rep	CDS	18932931	18933234	.	+	0	Parent=Os12t0498700-01
Chr12	irgsp1_rep	CDS	18933315	18933420	.	+	2	Parent=Os12t0498700-01
Chr12	irgsp1_rep	CDS	18933883	18933975	.	+	1	Parent=Os12t0498700-01
Chr12	irgsp1_rep	CDS	18934098	18934293	.	+	1	Parent=Os12t0498700-01
Chr12	irgsp1_rep	CDS	18934482	18934660	.	+	0	Parent=Os12t0498700-01
Chr12	irgsp1_rep	CDS	18935002	18935255	.	+	1	Parent=Os12t0498700-01
Chr12	irgsp1_rep	CDS	18935498	18935658	.	+	2	Parent=Os12t0498700-01
Chr12	irgsp1_rep	CDS	18935753	18935920	.	+	0	Parent=Os12t0498700-01
Chr12	irgsp1_rep	three_prime_UTR	18935921	18936001	.	+	.	Parent=Os12t0498700-01
Chr12	irgsp1_rep	mRNA	18938900	18943800	.	-	.	ID=Os12t0498800-01;Name=Os12t0498800-01;Locus_id=Os12g0498800;Note=Conserved hypothetical protein.;Transcript_evidence=AK067767 (DDBJ%2C Best hit);ORF_evidence=B8BI52 (UniProt);NIAS_FLcDNA=J013119P15;Expression=AK067767;TENOR=Os12t0498800-01;KEGG=Os12t0498800-01
Chr12	irgsp1_rep	five_prime_UTR	18943665	18943800	.	-	.	Parent=Os12t0498800-01
Chr12	irgsp1_rep	CDS	18943498	18943664	.	-	0	Parent=Os12t0498800-01
Chr12	irgsp1_rep	CDS	18941411	18941756	.	-	1	Parent=Os12t0498800-01
Chr12	irgsp1_rep	CDS	18940963	18941047	.	-	0	Parent=Os12t0498800-01
Chr12	irgsp1_rep	CDS	18939628	18939714	.	-	2	Parent=Os12t0498800-01
Chr12	irgsp1_rep	CDS	18939321	18939554	.	-	2	Parent=Os12t0498800-01
Chr12	irgsp1_rep	CDS	18939122	18939195	.	-	2	Parent=Os12t0498800-01
Chr12	irgsp1_rep	three_prime_UTR	18938900	18939121	.	-	.	Parent=Os12t0498800-01
Chr12	irgsp1_rep	mRNA	18954678	18955772	.	+	.	ID=Os12t0498900-01;Name=Os12t0498900-01;Locus_id=Os12g0498900;Note=Conserved hypothetical protein.;Transcript_evidence=AK073621 (DDBJ%2C Best hit);ORF_evidence=A3CHK6 (UniProt);NIAS_FLcDNA=J033048E12;Expression=AK073621;TENOR=Os12t0498900-01;KEGG=Os12t0498900-01
Chr12	irgsp1_rep	five_prime_UTR	18954678	18954709	.	+	.	Parent=Os12t0498900-01
Chr12	irgsp1_rep	five_prime_UTR	18954806	18954963	.	+	.	Parent=Os12t0498900-01
Chr12	irgsp1_rep	CDS	18954964	18955611	.	+	0	Parent=Os12t0498900-01
Chr12	irgsp1_rep	three_prime_UTR	18955612	18955772	.	+	.	Parent=Os12t0498900-01
Chr12	irgsp1_rep	mRNA	18984514	18986648	.	+	.	ID=Os12t0499700-00;Name=Os12t0499700-00;Locus_id=Os12g0499700;CGSNL Gene Symbol=RLCK370;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 370;Oryzabase Gene Symbol Synonym(s)=OsRLCK370;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 370;Note=Similar to Protein kinase domain containing protein.;Transcript_evidence=EU955852 (DDBJ);ORF_evidence=Q2QQC1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=19040;TENOR=Os12t0499700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	18984514	18985056	.	+	0	Parent=Os12t0499700-00
Chr12	irgsp1_rep	CDS	18985584	18985859	.	+	0	Parent=Os12t0499700-00
Chr12	irgsp1_rep	CDS	18985941	18986648	.	+	0	Parent=Os12t0499700-00
Chr12	irgsp1_rep	mRNA	19030993	19034414	.	+	.	ID=Os12t0500050-01;Name=Os12t0500050-01;Locus_id=Os12g0500050;Note=Non-protein coding transcript.;Transcript_evidence=AK242983 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090094J07;TENOR=Os12t0500050-01
Chr12	irgsp1_rep	exon	19030993	19034414	.	+	.	Parent=Os12t0500050-01
Chr12	irgsp1_rep	mRNA	19036389	19037934	.	+	.	ID=Os12t0500225-00;Name=Os12t0500225-00;Locus_id=Os12g0500225;Note=Conserved hypothetical protein.;Transcript_evidence=AK359595 (DDBJ);ORF_evidence=A2ZNF9 (UniProt);TENOR=Os12t0500225-00
Chr12	irgsp1_rep	five_prime_UTR	19036389	19036417	.	+	.	Parent=Os12t0500225-00
Chr12	irgsp1_rep	CDS	19036418	19036744	.	+	0	Parent=Os12t0500225-00
Chr12	irgsp1_rep	three_prime_UTR	19036745	19036821	.	+	.	Parent=Os12t0500225-00
Chr12	irgsp1_rep	three_prime_UTR	19037818	19037934	.	+	.	Parent=Os12t0500225-00
Chr12	irgsp1_rep	mRNA	19037314	19038965	.	-	.	ID=Os12t0500400-00;Name=Os12t0500400-00;Locus_id=Os12g0500400;CGSNL Gene Symbol=RLCK371;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 371;Oryzabase Gene Symbol Synonym(s)=OsRLCK371;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 371;Note=Similar to Protein kinase domain containing protein.;Transcript_evidence=AK334099 (DDBJ);ORF_evidence=Q2QQB6 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=19041;TENOR=Os12t0500400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	19038509	19038965	.	-	0	Parent=Os12t0500400-00
Chr12	irgsp1_rep	CDS	19037314	19038026	.	-	2	Parent=Os12t0500400-00
Chr12	irgsp1_rep	mRNA	19043758	19048583	.	-	.	ID=Os12t0500500-01;Name=Os12t0500500-01;Locus_id=Os12g0500500;Note=NB-ARC domain containing protein.;Transcript_evidence=AK101058 (DDBJ%2C Best hit);ORF_evidence=B8BM65 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J033021G15;Oryzabase=14964;Expression=AK101058;TENOR=Os12t0500500-01;KEGG=Os12t0500500-01
Chr12	irgsp1_rep	five_prime_UTR	19048496	19048583	.	-	.	Parent=Os12t0500500-01
Chr12	irgsp1_rep	five_prime_UTR	19046832	19046885	.	-	.	Parent=Os12t0500500-01
Chr12	irgsp1_rep	CDS	19044126	19046831	.	-	0	Parent=Os12t0500500-01
Chr12	irgsp1_rep	three_prime_UTR	19043758	19044125	.	-	.	Parent=Os12t0500500-01
Chr12	irgsp1_rep	mRNA	19055747	19060976	.	+	.	ID=Os12t0500700-01;Name=Os12t0500700-01;Locus_id=Os12g0500700;Note=Similar to Vacuolar sorting protein-like%3B embryogenesis protein H beta 58-like protein.;Transcript_evidence=AK073408 (DDBJ%2C Best hit);ORF_evidence=NP_001148716.1 (RefSeq);GO=Biological Process: vacuolar transport (GO:0007034),Cellular Component: retromer complex (GO:0030904);InterPro=Vacuolar protein sorting-associated protein 26 (IPR005377);NIAS_FLcDNA=J033040F22;Expression=AK073408;TENOR=Os12t0500700-01;KEGG=Os12t0500700-01
Chr12	irgsp1_rep	five_prime_UTR	19055747	19055846	.	+	.	Parent=Os12t0500700-01
Chr12	irgsp1_rep	CDS	19055847	19055849	.	+	0	Parent=Os12t0500700-01
Chr12	irgsp1_rep	CDS	19055955	19056029	.	+	0	Parent=Os12t0500700-01
Chr12	irgsp1_rep	CDS	19056173	19056247	.	+	0	Parent=Os12t0500700-01
Chr12	irgsp1_rep	CDS	19056361	19056433	.	+	0	Parent=Os12t0500700-01
Chr12	irgsp1_rep	CDS	19056672	19056716	.	+	2	Parent=Os12t0500700-01
Chr12	irgsp1_rep	CDS	19057353	19057464	.	+	2	Parent=Os12t0500700-01
Chr12	irgsp1_rep	CDS	19057930	19058002	.	+	1	Parent=Os12t0500700-01
Chr12	irgsp1_rep	CDS	19058314	19058358	.	+	0	Parent=Os12t0500700-01
Chr12	irgsp1_rep	CDS	19059352	19059407	.	+	0	Parent=Os12t0500700-01
Chr12	irgsp1_rep	CDS	19059506	19059681	.	+	1	Parent=Os12t0500700-01
Chr12	irgsp1_rep	CDS	19060425	19060612	.	+	2	Parent=Os12t0500700-01
Chr12	irgsp1_rep	three_prime_UTR	19060613	19060976	.	+	.	Parent=Os12t0500700-01
Chr12	irgsp1_rep	mRNA	19069857	19072449	.	-	.	ID=Os12t0500800-01;Name=Os12t0500800-01;Locus_id=Os12g0500800;Note=Conserved hypothetical protein.;Transcript_evidence=AK067652 (DDBJ%2C Best hit);ORF_evidence=NP_001176912.1 (RefSeq);NIAS_FLcDNA=J013113E18;TENOR=Os12t0500800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	19071021	19072449	.	-	.	Parent=Os12t0500800-01
Chr12	irgsp1_rep	CDS	19070610	19071020	.	-	0	Parent=Os12t0500800-01
Chr12	irgsp1_rep	CDS	19070179	19070523	.	-	0	Parent=Os12t0500800-01
Chr12	irgsp1_rep	three_prime_UTR	19069857	19070178	.	-	.	Parent=Os12t0500800-01
Chr12	irgsp1_rep	mRNA	19079366	19079880	.	-	.	ID=Os12t0501133-00;Name=Os12t0501133-00;Locus_id=Os12g0501133;Note=Conserved hypothetical protein.;Transcript_evidence=CT837817 (DDBJ%2C Secondary hit);ORF_evidence=Q2QQA8 (UniProt);TENOR=Os12t0501133-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	19079863	19079880	.	-	.	Parent=Os12t0501133-00
Chr12	irgsp1_rep	CDS	19079740	19079862	.	-	0	Parent=Os12t0501133-00
Chr12	irgsp1_rep	three_prime_UTR	19079366	19079739	.	-	.	Parent=Os12t0501133-00
Chr12	irgsp1_rep	mRNA	19089135	19092961	.	-	.	ID=Os12t0501400-01;Name=Os12t0501400-01;Locus_id=Os12g0501400;Note=Rossmann-like alpha/beta/alpha sandwich fold domain containing protein.;Transcript_evidence=AK111281 (DDBJ%2C Best hit);ORF_evidence=B6TLF8 (UniProt);GO=Biological Process: response to stress (GO:0006950);InterPro=UspA (IPR006016),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=002-180-H04;Expression=AK111281;TENOR=Os12t0501400-01;KEGG=Os12t0501400-01
Chr12	irgsp1_rep	five_prime_UTR	19092901	19092961	.	-	.	Parent=Os12t0501400-01
Chr12	irgsp1_rep	CDS	19092588	19092900	.	-	0	Parent=Os12t0501400-01
Chr12	irgsp1_rep	CDS	19092106	19092176	.	-	2	Parent=Os12t0501400-01
Chr12	irgsp1_rep	CDS	19089378	19089671	.	-	0	Parent=Os12t0501400-01
Chr12	irgsp1_rep	three_prime_UTR	19089135	19089377	.	-	.	Parent=Os12t0501400-01
Chr12	irgsp1_rep	mRNA	19106070	19115282	.	-	.	ID=Os12t0501700-00;Name=Os12t0501700-00;Locus_id=Os12g0501700;CGSNL Gene Symbol=MADS20;CGSNL Gene Name=MADS BOX GENE 20;Oryzabase Gene Symbol Synonym(s)=OsMADS20;Oryzabase Gene Name Synonym(s)=MADS box gene20%2C MADS-box transcription factor 20;Note=Transcription factor%2C MADS-box domain containing protein.;Transcript_evidence=AY250075 (DDBJ%2C Best hit);ORF_evidence=Q2QQA3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Transcription factor%2C MADS-box (IPR002100),Transcription factor%2C K-box (IPR002487);Oryzabase=3087;Expression=AY250075;TENOR=Os12t0501700-00;KEGG=Os12t0501700-00
Chr12	irgsp1_rep	CDS	19115095	19115282	.	-	0	Parent=Os12t0501700-00
Chr12	irgsp1_rep	CDS	19110180	19110264	.	-	1	Parent=Os12t0501700-00
Chr12	irgsp1_rep	CDS	19109971	19110035	.	-	0	Parent=Os12t0501700-00
Chr12	irgsp1_rep	CDS	19109110	19109209	.	-	1	Parent=Os12t0501700-00
Chr12	irgsp1_rep	CDS	19106838	19106876	.	-	0	Parent=Os12t0501700-00
Chr12	irgsp1_rep	CDS	19106582	19106694	.	-	0	Parent=Os12t0501700-00
Chr12	irgsp1_rep	CDS	19106366	19106477	.	-	1	Parent=Os12t0501700-00
Chr12	irgsp1_rep	three_prime_UTR	19106070	19106365	.	-	.	Parent=Os12t0501700-00
Chr12	irgsp1_rep	mRNA	19119356	19122575	.	+	.	ID=Os12t0501900-01;Name=Os12t0501900-01;Locus_id=Os12g0501900;Note=Similar to 10A19I.7.;Transcript_evidence=AK108423 (DDBJ%2C Best hit);ORF_evidence=Q9XHV9 (UniProt);NIAS_FLcDNA=002-143-A04;TENOR=Os12t0501900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	19119356	19119438	.	+	0	Parent=Os12t0501900-01
Chr12	irgsp1_rep	CDS	19119667	19119942	.	+	1	Parent=Os12t0501900-01
Chr12	irgsp1_rep	CDS	19122261	19122333	.	+	1	Parent=Os12t0501900-01
Chr12	irgsp1_rep	three_prime_UTR	19122334	19122575	.	+	.	Parent=Os12t0501900-01
Chr12	irgsp1_rep	mRNA	19121770	19124386	.	-	.	ID=Os12t0502000-01;Name=Os12t0502000-01;Locus_id=Os12g0502000;Note=Similar to nitrilase-associated protein.;Transcript_evidence=AK060063 (DDBJ%2C Best hit);ORF_evidence=NP_001150321.1 (RefSeq);NIAS_FLcDNA=006-305-G12;Expression=AK060063;TENOR=Os12t0502000-01;KEGG=Os12t0502000-01
Chr12	irgsp1_rep	five_prime_UTR	19124275	19124386	.	-	.	Parent=Os12t0502000-01
Chr12	irgsp1_rep	five_prime_UTR	19123056	19123082	.	-	.	Parent=Os12t0502000-01
Chr12	irgsp1_rep	CDS	19122837	19123055	.	-	0	Parent=Os12t0502000-01
Chr12	irgsp1_rep	CDS	19122308	19122394	.	-	0	Parent=Os12t0502000-01
Chr12	irgsp1_rep	three_prime_UTR	19121770	19122307	.	-	.	Parent=Os12t0502000-01
Chr12	irgsp1_rep	mRNA	19126131	19129712	.	-	.	ID=Os12t0502100-01;Name=Os12t0502100-01;Locus_id=Os12g0502100;Oryzabase Gene Symbol Synonym(s)=SIP15;Oryzabase Gene Name Synonym(s)=SKIP interacting protein 15%2C SKIPa-interacting protein 15%2C SKIPa-interacting protein 15;Note=Similar to SKIP interacting protein 15.;Transcript_evidence=AK289162 (DDBJ%2C Best hit);ORF_evidence=B8Q8A1 (UniProt);NIAS_FLcDNA=J100007I01;Oryzabase=9947;TENOR=Os12t0502100-01;KEGG=Os12t0502100-01
Chr12	irgsp1_rep	five_prime_UTR	19129677	19129712	.	-	.	Parent=Os12t0502100-01
Chr12	irgsp1_rep	CDS	19129446	19129676	.	-	0	Parent=Os12t0502100-01
Chr12	irgsp1_rep	CDS	19126530	19126686	.	-	0	Parent=Os12t0502100-01
Chr12	irgsp1_rep	CDS	19126303	19126436	.	-	2	Parent=Os12t0502100-01
Chr12	irgsp1_rep	three_prime_UTR	19126131	19126302	.	-	.	Parent=Os12t0502100-01
Chr12	irgsp1_rep	mRNA	19129927	19133740	.	+	.	ID=Os12t0502200-01;Name=Os12t0502200-01;Locus_id=Os12g0502200;CGSNL Gene Symbol=GRP6;CGSNL Gene Name=GLYCINE-RICH RNA-BINDING PROTEIN 6;Oryzabase Gene Symbol Synonym(s)=OsGRP6%2C GRRBP7;Oryzabase Gene Name Synonym(s)=glycine-rich RNA-binding protein 6%2C glycine-rich RNA-binding protein 7;Note=Similar to Low temperature-responsive RNA-binding protein.;Transcript_evidence=AK064923 (DDBJ%2C Best hit),AK099309 (DDBJ%2C Best hit);ORF_evidence=A2ZKT5 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013000N14,J023146P18;Oryzabase=8942;TENOR=Os12t0502200-01
Chr12	irgsp1_rep	five_prime_UTR	19129927	19129967	.	+	.	Parent=Os12t0502200-01
Chr12	irgsp1_rep	five_prime_UTR	19131939	19131947	.	+	.	Parent=Os12t0502200-01
Chr12	irgsp1_rep	CDS	19131948	19132056	.	+	0	Parent=Os12t0502200-01
Chr12	irgsp1_rep	CDS	19132156	19132224	.	+	2	Parent=Os12t0502200-01
Chr12	irgsp1_rep	CDS	19132304	19132410	.	+	2	Parent=Os12t0502200-01
Chr12	irgsp1_rep	CDS	19133010	19133501	.	+	0	Parent=Os12t0502200-01
Chr12	irgsp1_rep	three_prime_UTR	19133502	19133740	.	+	.	Parent=Os12t0502200-01
Chr12	irgsp1_rep	mRNA	19138425	19143392	.	-	.	ID=Os12t0502300-01;Name=Os12t0502300-01;Locus_id=Os12g0502300;CGSNL Gene Symbol=CYCA2%3B1;CGSNL Gene Name=CYCLIN-A2-1;Oryzabase Gene Symbol Synonym(s)=CycA2%3B1%2C CycA2%3Bos%3B1%2C Orysa%3BCycA2%3B1%2C OsCYCA2%3B1%2C CYCA2.2;Oryzabase Gene Name Synonym(s)=A-type cyclin 2%3B1;Note=Similar to Cyclin A-like protein (Fragment).;Transcript_evidence=AK106653 (DDBJ%2C Best hit);ORF_evidence=Q2QQ96 (UniProt);GO=Biological Process: regulation of cyclin-dependent protein kinase activity (GO:0000079),Biological Process: regulation of cell cycle (GO:0051726),Cellular Component: nucleus (GO:0005634),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin%2C C-terminal (IPR004367),Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763),Cyclin A/B/D/E (IPR014400);NIAS_FLcDNA=002-113-G02;Oryzabase=12361;Expression=AK106653;TENOR=Os12t0502300-01;KEGG=Os12t0502300-01
Chr12	irgsp1_rep	five_prime_UTR	19143298	19143392	.	-	.	Parent=Os12t0502300-01
Chr12	irgsp1_rep	five_prime_UTR	19142355	19142360	.	-	.	Parent=Os12t0502300-01
Chr12	irgsp1_rep	CDS	19142049	19142354	.	-	0	Parent=Os12t0502300-01
Chr12	irgsp1_rep	CDS	19141641	19141944	.	-	0	Parent=Os12t0502300-01
Chr12	irgsp1_rep	CDS	19140908	19141014	.	-	2	Parent=Os12t0502300-01
Chr12	irgsp1_rep	CDS	19140622	19140714	.	-	0	Parent=Os12t0502300-01
Chr12	irgsp1_rep	CDS	19139928	19140061	.	-	0	Parent=Os12t0502300-01
Chr12	irgsp1_rep	CDS	19139659	19139734	.	-	1	Parent=Os12t0502300-01
Chr12	irgsp1_rep	CDS	19139483	19139559	.	-	0	Parent=Os12t0502300-01
Chr12	irgsp1_rep	CDS	19139350	19139383	.	-	1	Parent=Os12t0502300-01
Chr12	irgsp1_rep	CDS	19139104	19139253	.	-	0	Parent=Os12t0502300-01
Chr12	irgsp1_rep	CDS	19138881	19139015	.	-	0	Parent=Os12t0502300-01
Chr12	irgsp1_rep	CDS	19138728	19138784	.	-	0	Parent=Os12t0502300-01
Chr12	irgsp1_rep	three_prime_UTR	19138425	19138727	.	-	.	Parent=Os12t0502300-01
Chr12	irgsp1_rep	mRNA	19138881	19142361	.	+	.	ID=Os12t0502350-00;Name=Os12t0502350-00;Locus_id=Os12g0502350;Note=Non-protein coding transcript.;Transcript_evidence=tplb0033b12 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os12t0502350-00
Chr12	irgsp1_rep	exon	19138881	19138994	.	+	.	Parent=Os12t0502350-00
Chr12	irgsp1_rep	exon	19139082	19139239	.	+	.	Parent=Os12t0502350-00
Chr12	irgsp1_rep	exon	19139441	19139564	.	+	.	Parent=Os12t0502350-00
Chr12	irgsp1_rep	exon	19139665	19139733	.	+	.	Parent=Os12t0502350-00
Chr12	irgsp1_rep	exon	19139927	19140058	.	+	.	Parent=Os12t0502350-00
Chr12	irgsp1_rep	exon	19140619	19140701	.	+	.	Parent=Os12t0502350-00
Chr12	irgsp1_rep	exon	19140895	19141012	.	+	.	Parent=Os12t0502350-00
Chr12	irgsp1_rep	exon	19141639	19141927	.	+	.	Parent=Os12t0502350-00
Chr12	irgsp1_rep	exon	19142036	19142361	.	+	.	Parent=Os12t0502350-00
Chr12	irgsp1_rep	mRNA	19147384	19150955	.	-	.	ID=Os12t0502400-01;Name=Os12t0502400-01;Locus_id=Os12g0502400;Note=Similar to Phosphoserine phosphatase (EC 3.1.3.3) (PSP) (O-phosphoserine phosphohydrolase) (PSPase) (L-3-phosphoserine phosphatase).;Transcript_evidence=AK111001 (DDBJ%2C Best hit);ORF_evidence=B6SU38 (UniProt);GO=Biological Process: L-serine biosynthetic process (GO:0006564),Biological Process: metabolic process (GO:0008152),Molecular Function: phosphoserine phosphatase activity (GO:0004647),Molecular Function: phosphatase activity (GO:0016791);InterPro=Phosphoserine phosphatase SerB (IPR004469),HAD-superfamily hydrolase%2C subfamily IB%2C PSPase-like (IPR006383),Phosphoserine phosphatase%2C domain 2 (IPR023190),HAD-like domain (IPR023214);NIAS_FLcDNA=002-174-E12;Expression=AK111001;TENOR=Os12t0502400-01;KEGG=Os12t0502400-01 (EC:3.1.3.3)
Chr12	irgsp1_rep	five_prime_UTR	19150849	19150955	.	-	.	Parent=Os12t0502400-01
Chr12	irgsp1_rep	five_prime_UTR	19150407	19150410	.	-	.	Parent=Os12t0502400-01
Chr12	irgsp1_rep	CDS	19150184	19150406	.	-	0	Parent=Os12t0502400-01
Chr12	irgsp1_rep	CDS	19149954	19150086	.	-	2	Parent=Os12t0502400-01
Chr12	irgsp1_rep	CDS	19149743	19149850	.	-	1	Parent=Os12t0502400-01
Chr12	irgsp1_rep	CDS	19149130	19149223	.	-	1	Parent=Os12t0502400-01
Chr12	irgsp1_rep	CDS	19148629	19148778	.	-	0	Parent=Os12t0502400-01
Chr12	irgsp1_rep	CDS	19148500	19148553	.	-	0	Parent=Os12t0502400-01
Chr12	irgsp1_rep	CDS	19147737	19147862	.	-	0	Parent=Os12t0502400-01
Chr12	irgsp1_rep	three_prime_UTR	19147384	19147736	.	-	.	Parent=Os12t0502400-01
Chr12	irgsp1_rep	mRNA	19151192	19155969	.	+	.	ID=Os12t0502500-01;Name=Os12t0502500-01;Locus_id=Os12g0502500;CGSNL Gene Symbol=CPA4;CGSNL Gene Name=CARBAMOYLPUTRESCINE AMIDASE 4;Oryzabase Gene Symbol Synonym(s)=OsCPA4;Oryzabase Gene Name Synonym(s)=N-carbamoyl-Put amidohydrolase 4;Note=Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase domain containing protein.;Transcript_evidence=AK069786 (DDBJ%2C Best hit);ORF_evidence=C3SA37 (UniProt);GO=Biological Process: nitrogen compound metabolic process (GO:0006807),Molecular Function: hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds (GO:0016810);InterPro=Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (IPR003010);NIAS_FLcDNA=J023030L13;Oryzabase=21665;TENOR=Os12t0502500-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	19151192	19151195	.	+	.	Parent=Os12t0502500-01
Chr12	irgsp1_rep	CDS	19151196	19151406	.	+	0	Parent=Os12t0502500-01
Chr12	irgsp1_rep	CDS	19152322	19152460	.	+	2	Parent=Os12t0502500-01
Chr12	irgsp1_rep	CDS	19153177	19153305	.	+	1	Parent=Os12t0502500-01
Chr12	irgsp1_rep	CDS	19153721	19153779	.	+	1	Parent=Os12t0502500-01
Chr12	irgsp1_rep	CDS	19154453	19154565	.	+	2	Parent=Os12t0502500-01
Chr12	irgsp1_rep	CDS	19154707	19154799	.	+	0	Parent=Os12t0502500-01
Chr12	irgsp1_rep	CDS	19154946	19155048	.	+	0	Parent=Os12t0502500-01
Chr12	irgsp1_rep	CDS	19155369	19155451	.	+	2	Parent=Os12t0502500-01
Chr12	irgsp1_rep	CDS	19155543	19155584	.	+	0	Parent=Os12t0502500-01
Chr12	irgsp1_rep	three_prime_UTR	19155585	19155969	.	+	.	Parent=Os12t0502500-01
Chr12	irgsp1_rep	mRNA	19151501	19152088	.	+	.	ID=Os12t0502600-01;Name=Os12t0502600-01;Locus_id=Os12g0502600;Note=Conserved hypothetical protein.;Transcript_evidence=AK120387 (DDBJ%2C Best hit);ORF_evidence=NP_001062928.1 (RefSeq);NIAS_FLcDNA=J013073J05;TENOR=Os12t0502600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	19151501	19151844	.	+	.	Parent=Os12t0502600-01
Chr12	irgsp1_rep	CDS	19151845	19152045	.	+	0	Parent=Os12t0502600-01
Chr12	irgsp1_rep	three_prime_UTR	19152046	19152088	.	+	.	Parent=Os12t0502600-01
Chr12	irgsp1_rep	mRNA	19158097	19161630	.	+	.	ID=Os12t0502700-01;Name=Os12t0502700-01;Locus_id=Os12g0502700;Oryzabase Gene Symbol Synonym(s)=OsDjC81;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C81;Note=Heat shock protein DnaJ%2C N-terminal domain containing protein.;Transcript_evidence=AK109540 (DDBJ%2C Best hit);ORF_evidence=C3SA38 (UniProt);GO=Biological Process: protein folding (GO:0006457),Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880),Heat shock protein DnaJ%2C conserved site (IPR018253),Zinc finger%2C double-stranded RNA binding (IPR022755);NIAS_FLcDNA=002-119-G10;Oryzabase=12238;Expression=AK109540;TENOR=Os12t0502700-01;KEGG=Os12t0502700-01
Chr12	irgsp1_rep	five_prime_UTR	19158097	19158198	.	+	.	Parent=Os12t0502700-01
Chr12	irgsp1_rep	CDS	19158199	19159893	.	+	0	Parent=Os12t0502700-01
Chr12	irgsp1_rep	CDS	19161148	19161206	.	+	0	Parent=Os12t0502700-01
Chr12	irgsp1_rep	CDS	19161337	19161406	.	+	1	Parent=Os12t0502700-01
Chr12	irgsp1_rep	three_prime_UTR	19161407	19161630	.	+	.	Parent=Os12t0502700-01
Chr12	irgsp1_rep	mRNA	19161739	19165120	.	-	.	ID=Os12t0502800-02;Name=Os12t0502800-02;Locus_id=Os12g0502800;Note=Similar to Ureide permease 2.;Transcript_evidence=AK073792 (DDBJ%2C Best hit),AK106219 (DDBJ%2C Best hit);ORF_evidence=B6U6B9 (UniProt);NIAS_FLcDNA=J033068M22,001-208-H06;TENOR=Os12t0502800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	19165119	19165120	.	-	.	Parent=Os12t0502800-02
Chr12	irgsp1_rep	CDS	19165092	19165118	.	-	0	Parent=Os12t0502800-02
Chr12	irgsp1_rep	CDS	19164330	19164623	.	-	0	Parent=Os12t0502800-02
Chr12	irgsp1_rep	CDS	19164077	19164215	.	-	0	Parent=Os12t0502800-02
Chr12	irgsp1_rep	CDS	19163571	19163739	.	-	2	Parent=Os12t0502800-02
Chr12	irgsp1_rep	CDS	19163336	19163379	.	-	1	Parent=Os12t0502800-02
Chr12	irgsp1_rep	CDS	19163117	19163226	.	-	2	Parent=Os12t0502800-02
Chr12	irgsp1_rep	CDS	19162621	19162995	.	-	0	Parent=Os12t0502800-02
Chr12	irgsp1_rep	CDS	19162164	19162322	.	-	0	Parent=Os12t0502800-02
Chr12	irgsp1_rep	three_prime_UTR	19161739	19162163	.	-	.	Parent=Os12t0502800-02
Chr12	irgsp1_rep	mRNA	19161855	19165120	.	-	.	ID=Os12t0502800-03;Name=Os12t0502800-03;Locus_id=Os12g0502800;Note=Similar to Ureide permease 2.;Transcript_evidence=AK058620 (DDBJ%2C Best hit);ORF_evidence=B6U6B9 (UniProt);InterPro=Ureide permease (IPR009834);NIAS_FLcDNA=001-018-B07;TENOR=Os12t0502800-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	19165092	19165120	.	-	0	Parent=Os12t0502800-03
Chr12	irgsp1_rep	CDS	19164330	19164582	.	-	1	Parent=Os12t0502800-03
Chr12	irgsp1_rep	CDS	19164077	19164215	.	-	0	Parent=Os12t0502800-03
Chr12	irgsp1_rep	CDS	19163571	19163739	.	-	2	Parent=Os12t0502800-03
Chr12	irgsp1_rep	CDS	19163336	19163379	.	-	1	Parent=Os12t0502800-03
Chr12	irgsp1_rep	CDS	19163117	19163226	.	-	2	Parent=Os12t0502800-03
Chr12	irgsp1_rep	CDS	19162621	19162995	.	-	0	Parent=Os12t0502800-03
Chr12	irgsp1_rep	CDS	19162164	19162322	.	-	0	Parent=Os12t0502800-03
Chr12	irgsp1_rep	three_prime_UTR	19161855	19162163	.	-	.	Parent=Os12t0502800-03
Chr12	irgsp1_rep	mRNA	19161795	19165119	.	-	.	ID=Os12t0502800-04;Name=Os12t0502800-04;Locus_id=Os12g0502800;Note=Similar to Ureide permease 2.;Transcript_evidence=AK072750 (DDBJ%2C Best hit);ORF_evidence=B6U6B9 (UniProt);InterPro=Ureide permease (IPR009834);NIAS_FLcDNA=J023134K21;TENOR=Os12t0502800-04;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	19165092	19165119	.	-	.	Parent=Os12t0502800-04
Chr12	irgsp1_rep	five_prime_UTR	19164654	19164998	.	-	.	Parent=Os12t0502800-04
Chr12	irgsp1_rep	CDS	19164330	19164653	.	-	0	Parent=Os12t0502800-04
Chr12	irgsp1_rep	CDS	19164077	19164215	.	-	0	Parent=Os12t0502800-04
Chr12	irgsp1_rep	CDS	19163571	19163739	.	-	2	Parent=Os12t0502800-04
Chr12	irgsp1_rep	CDS	19163336	19163379	.	-	1	Parent=Os12t0502800-04
Chr12	irgsp1_rep	CDS	19163117	19163226	.	-	2	Parent=Os12t0502800-04
Chr12	irgsp1_rep	CDS	19162621	19162995	.	-	0	Parent=Os12t0502800-04
Chr12	irgsp1_rep	CDS	19162164	19162322	.	-	0	Parent=Os12t0502800-04
Chr12	irgsp1_rep	three_prime_UTR	19161795	19162163	.	-	.	Parent=Os12t0502800-04
Chr12	irgsp1_rep	mRNA	19180665	19185915	.	-	.	ID=Os12t0503000-01;Name=Os12t0503000-01;Locus_id=Os12g0503000;RAP-DB Gene Symbol Synonym(s)=OsUPS1;RAP-DB Gene Name Synonym(s)=UREIDE PERMEASE 1;CGSNL Gene Symbol=UPS1;CGSNL Gene Name=UREIDE PERMEASE 1;Oryzabase Gene Symbol Synonym(s)=OsUPS1;Oryzabase Gene Name Synonym(s)=ureide permease1;Note=Allantoin transporter%2C Ureide metabolism%2C Nitrogen molecular sensor;Transcript_evidence=AK069916,AK061376,AK109368;ORF_evidence=Q2QQ90;GO=Biological Process: nitrogen compound transport (GO:0071705);InterPro=Ureide permease (IPR009834);NIAS_FLcDNA=J023038C16,006-304-G07,006-207-D03;Manual Curation=May 15%2C 2018;Literature_PMID=29720986;Oryzabase=22421;Expression=AK069916;TENOR=Os12t0503000-01;KEGG=Os12t0503000-01
Chr12	irgsp1_rep	five_prime_UTR	19185724	19185915	.	-	.	Parent=Os12t0503000-01
Chr12	irgsp1_rep	five_prime_UTR	19184616	19184658	.	-	.	Parent=Os12t0503000-01
Chr12	irgsp1_rep	CDS	19184379	19184615	.	-	0	Parent=Os12t0503000-01
Chr12	irgsp1_rep	CDS	19183843	19183987	.	-	0	Parent=Os12t0503000-01
Chr12	irgsp1_rep	CDS	19183544	19183718	.	-	2	Parent=Os12t0503000-01
Chr12	irgsp1_rep	CDS	19183255	19183298	.	-	1	Parent=Os12t0503000-01
Chr12	irgsp1_rep	CDS	19183062	19183183	.	-	2	Parent=Os12t0503000-01
Chr12	irgsp1_rep	CDS	19182141	19182515	.	-	0	Parent=Os12t0503000-01
Chr12	irgsp1_rep	CDS	19181289	19181447	.	-	0	Parent=Os12t0503000-01
Chr12	irgsp1_rep	three_prime_UTR	19180665	19181288	.	-	.	Parent=Os12t0503000-01
Chr12	irgsp1_rep	mRNA	19180914	19185884	.	-	.	ID=Os12t0503000-03;Name=Os12t0503000-03;Locus_id=Os12g0503000;CGSNL Gene Symbol=UPS1;CGSNL Gene Name=UREIDE PERMEASE 1;Oryzabase Gene Symbol Synonym(s)=OsUPS1;Oryzabase Gene Name Synonym(s)=ureide permease1;Note=Similar to Ureide permease 4.;Transcript_evidence=AK061171 (DDBJ%2C Best hit);ORF_evidence=C3SA43 (UniProt);InterPro=Ureide permease (IPR009834);NIAS_FLcDNA=006-209-B06;Oryzabase=22421;Expression=AK061171;TENOR=Os12t0503000-03;KEGG=Os12t0503000-03
Chr12	irgsp1_rep	five_prime_UTR	19185724	19185884	.	-	.	Parent=Os12t0503000-03
Chr12	irgsp1_rep	five_prime_UTR	19184616	19184658	.	-	.	Parent=Os12t0503000-03
Chr12	irgsp1_rep	CDS	19184379	19184615	.	-	0	Parent=Os12t0503000-03
Chr12	irgsp1_rep	CDS	19183843	19183987	.	-	0	Parent=Os12t0503000-03
Chr12	irgsp1_rep	CDS	19183544	19183718	.	-	2	Parent=Os12t0503000-03
Chr12	irgsp1_rep	CDS	19183255	19183298	.	-	1	Parent=Os12t0503000-03
Chr12	irgsp1_rep	CDS	19183062	19183183	.	-	2	Parent=Os12t0503000-03
Chr12	irgsp1_rep	CDS	19182228	19182515	.	-	0	Parent=Os12t0503000-03
Chr12	irgsp1_rep	CDS	19181157	19181249	.	-	0	Parent=Os12t0503000-03
Chr12	irgsp1_rep	three_prime_UTR	19180914	19181156	.	-	.	Parent=Os12t0503000-03
Chr12	irgsp1_rep	mRNA	19182540	19185807	.	-	.	ID=Os12t0503000-04;Name=Os12t0503000-04;Locus_id=Os12g0503000;CGSNL Gene Symbol=UPS1;CGSNL Gene Name=UREIDE PERMEASE 1;Oryzabase Gene Symbol Synonym(s)=OsUPS1;Oryzabase Gene Name Synonym(s)=ureide permease1;Note=Similar to Ureide permease 4.;Transcript_evidence=AK064238 (DDBJ%2C Best hit);ORF_evidence=C3SA43 (UniProt);InterPro=Ureide permease (IPR009834);NIAS_FLcDNA=002-105-A09;Oryzabase=22421;Expression=AK064238;TENOR=Os12t0503000-04;KEGG=Os12t0503000-04
Chr12	irgsp1_rep	five_prime_UTR	19185724	19185807	.	-	.	Parent=Os12t0503000-04
Chr12	irgsp1_rep	five_prime_UTR	19184616	19184658	.	-	.	Parent=Os12t0503000-04
Chr12	irgsp1_rep	CDS	19184379	19184615	.	-	0	Parent=Os12t0503000-04
Chr12	irgsp1_rep	CDS	19183843	19183987	.	-	0	Parent=Os12t0503000-04
Chr12	irgsp1_rep	CDS	19183544	19183718	.	-	2	Parent=Os12t0503000-04
Chr12	irgsp1_rep	CDS	19183238	19183298	.	-	1	Parent=Os12t0503000-04
Chr12	irgsp1_rep	three_prime_UTR	19182540	19183237	.	-	.	Parent=Os12t0503000-04
Chr12	irgsp1_rep	mRNA	19180943	19185732	.	-	.	ID=Os12t0503000-05;Name=Os12t0503000-05;Locus_id=Os12g0503000;CGSNL Gene Symbol=UPS1;CGSNL Gene Name=UREIDE PERMEASE 1;Oryzabase Gene Symbol Synonym(s)=OsUPS1;Oryzabase Gene Name Synonym(s)=ureide permease1;Note=Similar to Allantoin permease.;Transcript_evidence=AK073310 (DDBJ%2C Best hit);ORF_evidence=C3SA43 (UniProt);InterPro=Ureide permease (IPR009834);NIAS_FLcDNA=J033030F01;Oryzabase=22421;Expression=AK073310;TENOR=Os12t0503000-05;KEGG=Os12t0503000-05
Chr12	irgsp1_rep	five_prime_UTR	19184616	19185732	.	-	.	Parent=Os12t0503000-05
Chr12	irgsp1_rep	CDS	19184379	19184615	.	-	0	Parent=Os12t0503000-05
Chr12	irgsp1_rep	CDS	19183843	19183987	.	-	0	Parent=Os12t0503000-05
Chr12	irgsp1_rep	CDS	19183544	19183718	.	-	2	Parent=Os12t0503000-05
Chr12	irgsp1_rep	CDS	19183255	19183298	.	-	1	Parent=Os12t0503000-05
Chr12	irgsp1_rep	CDS	19183062	19183183	.	-	2	Parent=Os12t0503000-05
Chr12	irgsp1_rep	CDS	19182141	19182515	.	-	0	Parent=Os12t0503000-05
Chr12	irgsp1_rep	CDS	19181289	19181447	.	-	0	Parent=Os12t0503000-05
Chr12	irgsp1_rep	three_prime_UTR	19180943	19181288	.	-	.	Parent=Os12t0503000-05
Chr12	irgsp1_rep	mRNA	19194860	19199795	.	-	.	ID=Os12t0503101-00;Name=Os12t0503101-00;Locus_id=Os12g0503101;Note=Hypothetical conserved gene.;Transcript_evidence=tplb0007p15 (Wheat FLcDNA);ORF_evidence=B8BF14 (UniProt);TENOR=Os12t0503101-00;KEGG=Os12t0503101-00
Chr12	irgsp1_rep	CDS	19199442	19199795	.	-	0	Parent=Os12t0503101-00
Chr12	irgsp1_rep	CDS	19198071	19198297	.	-	0	Parent=Os12t0503101-00
Chr12	irgsp1_rep	CDS	19197933	19197978	.	-	1	Parent=Os12t0503101-00
Chr12	irgsp1_rep	CDS	19194866	19194904	.	-	0	Parent=Os12t0503101-00
Chr12	irgsp1_rep	three_prime_UTR	19194860	19194865	.	-	.	Parent=Os12t0503101-00
Chr12	irgsp1_rep	mRNA	19199289	19204109	.	+	.	ID=Os12t0503200-01;Name=Os12t0503200-01;Locus_id=Os12g0503200;Note=Similar to TRANSLATION INITIATION FACTOR IF-2P.;Transcript_evidence=AK099690 (DDBJ%2C Best hit);ORF_evidence=B8BPT5 (UniProt);InterPro=Translation initiation factor IF- 2 (IPR015760);NIAS_FLcDNA=J013073D10;Expression=AK099690;TENOR=Os12t0503200-01;KEGG=Os12t0503200-01
Chr12	irgsp1_rep	five_prime_UTR	19199289	19199290	.	+	.	Parent=Os12t0503200-01
Chr12	irgsp1_rep	CDS	19199291	19200466	.	+	0	Parent=Os12t0503200-01
Chr12	irgsp1_rep	three_prime_UTR	19200467	19200768	.	+	.	Parent=Os12t0503200-01
Chr12	irgsp1_rep	three_prime_UTR	19200865	19200965	.	+	.	Parent=Os12t0503200-01
Chr12	irgsp1_rep	three_prime_UTR	19201075	19201165	.	+	.	Parent=Os12t0503200-01
Chr12	irgsp1_rep	three_prime_UTR	19201294	19201404	.	+	.	Parent=Os12t0503200-01
Chr12	irgsp1_rep	three_prime_UTR	19201496	19201561	.	+	.	Parent=Os12t0503200-01
Chr12	irgsp1_rep	three_prime_UTR	19202372	19202431	.	+	.	Parent=Os12t0503200-01
Chr12	irgsp1_rep	three_prime_UTR	19202510	19203085	.	+	.	Parent=Os12t0503200-01
Chr12	irgsp1_rep	three_prime_UTR	19203450	19203575	.	+	.	Parent=Os12t0503200-01
Chr12	irgsp1_rep	three_prime_UTR	19203658	19203777	.	+	.	Parent=Os12t0503200-01
Chr12	irgsp1_rep	three_prime_UTR	19203865	19204109	.	+	.	Parent=Os12t0503200-01
Chr12	irgsp1_rep	mRNA	19202961	19205182	.	+	.	ID=Os12t0503200-02;Name=Os12t0503200-02;Locus_id=Os12g0503200;Note=Translation elongation and initiation factors/Ribosomal%2C beta-barrel domain containing protein.;Transcript_evidence=AK105377 (DDBJ%2C Best hit);ORF_evidence=Q2QQ85 (UniProt);InterPro=Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000);NIAS_FLcDNA=001-120-F01;Expression=AK105377;TENOR=Os12t0503200-02;KEGG=Os12t0503200-02
Chr12	irgsp1_rep	five_prime_UTR	19202961	19202962	.	+	.	Parent=Os12t0503200-02
Chr12	irgsp1_rep	CDS	19202963	19203085	.	+	0	Parent=Os12t0503200-02
Chr12	irgsp1_rep	CDS	19203450	19203575	.	+	0	Parent=Os12t0503200-02
Chr12	irgsp1_rep	CDS	19203658	19203777	.	+	0	Parent=Os12t0503200-02
Chr12	irgsp1_rep	CDS	19203865	19203930	.	+	0	Parent=Os12t0503200-02
Chr12	irgsp1_rep	three_prime_UTR	19203931	19205182	.	+	.	Parent=Os12t0503200-02
Chr12	irgsp1_rep	mRNA	19204166	19206236	.	-	.	ID=Os12t0503300-00;Name=Os12t0503300-00;Locus_id=Os12g0503300;Note=Similar to Ureide permease 2.;Transcript_evidence=AK335953 (DDBJ);ORF_evidence=B6U6B9 (UniProt);InterPro=Ureide permease (IPR009834);TENOR=Os12t0503300-00;KEGG=Os12t0503300-00
Chr12	irgsp1_rep	five_prime_UTR	19206228	19206236	.	-	.	Parent=Os12t0503300-00
Chr12	irgsp1_rep	CDS	19205991	19206227	.	-	0	Parent=Os12t0503300-00
Chr12	irgsp1_rep	CDS	19205484	19205622	.	-	0	Parent=Os12t0503300-00
Chr12	irgsp1_rep	CDS	19205172	19205390	.	-	2	Parent=Os12t0503300-00
Chr12	irgsp1_rep	CDS	19204908	19205014	.	-	2	Parent=Os12t0503300-00
Chr12	irgsp1_rep	CDS	19204435	19204809	.	-	0	Parent=Os12t0503300-00
Chr12	irgsp1_rep	CDS	19204166	19204324	.	-	0	Parent=Os12t0503300-00
Chr12	irgsp1_rep	mRNA	19229292	19229663	.	-	.	ID=Os12t0503550-00;Name=Os12t0503550-00;Locus_id=Os12g0503550;Note=Protein of unknown function DUF584 domain containing protein.;Transcript_evidence=tplb0014b09 (Wheat FLcDNA);ORF_evidence=NP_001064875.2 (RefSeq);InterPro=Protein of unknown function DUF584 (IPR007608);TENOR=Os12t0503550-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	19229504	19229663	.	-	.	Parent=Os12t0503550-00
Chr12	irgsp1_rep	CDS	19229339	19229503	.	-	0	Parent=Os12t0503550-00
Chr12	irgsp1_rep	three_prime_UTR	19229292	19229338	.	-	.	Parent=Os12t0503550-00
Chr12	irgsp1_rep	mRNA	19292613	19292914	.	-	.	ID=Os12t0504050-00;Name=Os12t0504050-00;Locus_id=Os12g0504050;Note=Similar to Photosystem II reaction center protein Z.;Transcript_evidence=U37703 (DDBJ);ORF_evidence=D7KRB7 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Biological Process: photosystem II stabilization (GO:0042549),Cellular Component: photosystem II (GO:0009523),Cellular Component: photosystem II reaction center (GO:0009539);InterPro=Photosystem II PsbZ%2C reaction centre (IPR002644);TENOR=Os12t0504050-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	19292824	19292914	.	-	.	Parent=Os12t0504050-00
Chr12	irgsp1_rep	CDS	19292623	19292823	.	-	0	Parent=Os12t0504050-00
Chr12	irgsp1_rep	three_prime_UTR	19292613	19292622	.	-	.	Parent=Os12t0504050-00
Chr12	irgsp1_rep	mRNA	19332572	19333201	.	-	.	ID=Os12t0504900-00;Name=Os12t0504900-00;Locus_id=Os12g0504900;Note=Glucoamylase%2C putatuve domain containing protein.;Transcript_evidence=AK376471 (DDBJ);ORF_evidence=Q2QQ69 (UniProt);InterPro=Glucoamylase%2C putatuve (IPR004314);TENOR=Os12t0504900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	19333052	19333201	.	-	0	Parent=Os12t0504900-00
Chr12	irgsp1_rep	CDS	19332574	19332918	.	-	0	Parent=Os12t0504900-00
Chr12	irgsp1_rep	three_prime_UTR	19332572	19332573	.	-	.	Parent=Os12t0504900-00
Chr12	irgsp1_rep	mRNA	19376144	19376624	.	+	.	ID=Os12t0505583-00;Name=Os12t0505583-00;Locus_id=Os12g0505583;Note=Non-protein coding transcript.;Transcript_evidence=BT087949 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0505583-00
Chr12	irgsp1_rep	exon	19376144	19376624	.	+	.	Parent=Os12t0505583-00
Chr12	irgsp1_rep	mRNA	19381453	19382291	.	+	.	ID=Os12t0505800-00;Name=Os12t0505800-00;Locus_id=Os12g0505800;Note=Similar to Trehalose-phosphatase family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QQ60 (UniProt);GO=Biological Process: trehalose biosynthetic process (GO:0005992),Molecular Function: catalytic activity (GO:0003824);InterPro=Trehalose-phosphatase (IPR003337),HAD-like domain (IPR023214);TENOR=Os12t0505800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	19381453	19381481	.	+	0	Parent=Os12t0505800-00
Chr12	irgsp1_rep	CDS	19381596	19381869	.	+	1	Parent=Os12t0505800-00
Chr12	irgsp1_rep	CDS	19381959	19382291	.	+	0	Parent=Os12t0505800-00
Chr12	irgsp1_rep	mRNA	19383377	19383876	.	-	.	ID=Os12t0505950-00;Name=Os12t0505950-00;Locus_id=Os12g0505950;Note=Similar to PH domain containing protein.;Transcript_evidence=CT828021 (DDBJ%2C Best hit);ORF_evidence=NP_001152545.1 (RefSeq);TENOR=Os12t0505950-00;KEGG=Os12t0505950-00
Chr12	irgsp1_rep	five_prime_UTR	19383811	19383876	.	-	.	Parent=Os12t0505950-00
Chr12	irgsp1_rep	CDS	19383568	19383810	.	-	0	Parent=Os12t0505950-00
Chr12	irgsp1_rep	three_prime_UTR	19383377	19383567	.	-	.	Parent=Os12t0505950-00
Chr12	irgsp1_rep	mRNA	19391960	19392730	.	-	.	ID=Os12t0506100-00;Name=Os12t0506100-00;Locus_id=Os12g0506100;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001176967.1 (RefSeq);TENOR=Os12t0506100-00;KEGG=Os12t0506100-00
Chr12	irgsp1_rep	CDS	19391960	19392730	.	-	0	Parent=Os12t0506100-00
Chr12	irgsp1_rep	mRNA	19424812	19428447	.	+	.	ID=Os12t0506400-01;Name=Os12t0506400-01;Locus_id=Os12g0506400;Oryzabase Gene Symbol Synonym(s)=OsCNIH2%2C CNIH2;Oryzabase Gene Name Synonym(s)=cornichon 2;Note=Cornichon family protein.;Transcript_evidence=AK060944 (DDBJ%2C Best hit);ORF_evidence=B6T2L9 (UniProt);GO=Biological Process: intracellular signal transduction (GO:0035556),Cellular Component: membrane (GO:0016020);InterPro=Cornichon (IPR003377);NIAS_FLcDNA=006-201-E03;Oryzabase=19301;Expression=AK060944;TENOR=Os12t0506400-01;KEGG=Os12t0506400-01
Chr12	irgsp1_rep	five_prime_UTR	19424812	19425079	.	+	.	Parent=Os12t0506400-01
Chr12	irgsp1_rep	CDS	19425080	19425148	.	+	0	Parent=Os12t0506400-01
Chr12	irgsp1_rep	CDS	19426029	19426216	.	+	0	Parent=Os12t0506400-01
Chr12	irgsp1_rep	CDS	19426946	19427068	.	+	1	Parent=Os12t0506400-01
Chr12	irgsp1_rep	CDS	19427886	19427955	.	+	1	Parent=Os12t0506400-01
Chr12	irgsp1_rep	three_prime_UTR	19427956	19427990	.	+	.	Parent=Os12t0506400-01
Chr12	irgsp1_rep	three_prime_UTR	19428084	19428447	.	+	.	Parent=Os12t0506400-01
Chr12	irgsp1_rep	mRNA	19429079	19430766	.	-	.	ID=Os12t0506500-01;Name=Os12t0506500-01;Locus_id=Os12g0506500;Note=Calmodulin-binding%2C plant domain containing protein.;Transcript_evidence=AK119779 (DDBJ%2C Best hit);ORF_evidence=A3CHP8 (UniProt);InterPro=Calmodulin-binding protein%2C plant (IPR012417);NIAS_FLcDNA=002-173-A09;Expression=AK119779;TENOR=Os12t0506500-01;KEGG=Os12t0506500-01
Chr12	irgsp1_rep	five_prime_UTR	19430576	19430766	.	-	.	Parent=Os12t0506500-01
Chr12	irgsp1_rep	CDS	19429190	19430575	.	-	0	Parent=Os12t0506500-01
Chr12	irgsp1_rep	three_prime_UTR	19429079	19429189	.	-	.	Parent=Os12t0506500-01
Chr12	irgsp1_rep	mRNA	19429189	19431223	.	+	.	ID=Os12t0506600-01;Name=Os12t0506600-01;Locus_id=Os12g0506600;Note=Hypothetical protein.;Transcript_evidence=AK106422 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-103-B05;Expression=AK106422;TENOR=Os12t0506600-01;KEGG=Os12t0506600-01
Chr12	irgsp1_rep	five_prime_UTR	19429189	19430021	.	+	.	Parent=Os12t0506600-01
Chr12	irgsp1_rep	CDS	19430022	19430483	.	+	0	Parent=Os12t0506600-01
Chr12	irgsp1_rep	three_prime_UTR	19430484	19431223	.	+	.	Parent=Os12t0506600-01
Chr12	irgsp1_rep	mRNA	19434492	19438009	.	+	.	ID=Os12t0506700-01;Name=Os12t0506700-01;Locus_id=Os12g0506700;Note=Carbamoyl phosphate synthetase%2C large subunit%2C ATP-binding domain containing protein.;Transcript_evidence=AK288000 (DDBJ%2C Best hit);ORF_evidence=NP_001066840.2 (RefSeq);NIAS_FLcDNA=J075109G15;TENOR=Os12t0506700-01;KEGG=Os12t0506700-01
Chr12	irgsp1_rep	five_prime_UTR	19434492	19434520	.	+	.	Parent=Os12t0506700-01
Chr12	irgsp1_rep	CDS	19434521	19435738	.	+	0	Parent=Os12t0506700-01
Chr12	irgsp1_rep	CDS	19437598	19437813	.	+	0	Parent=Os12t0506700-01
Chr12	irgsp1_rep	three_prime_UTR	19437814	19438009	.	+	.	Parent=Os12t0506700-01
Chr12	irgsp1_rep	mRNA	19440718	19443617	.	+	.	ID=Os12t0506800-01;Name=Os12t0506800-01;Locus_id=Os12g0506800;CGSNL Gene Symbol=ATG10B;CGSNL Gene Name=AUTOPHAGY ASSOCIATED GENE 10B;Oryzabase Gene Symbol Synonym(s)=OsATG10b%2C Atg10b;Oryzabase Gene Name Synonym(s)=autophagy 10b%2C AUTOPHAGY RELATED10b;Note=Similar to H0306B06.12 protein.;Transcript_evidence=AK099684 (DDBJ%2C Best hit);ORF_evidence=Q01IC7 (UniProt);NIAS_FLcDNA=J013072A20;Oryzabase=9655;TENOR=Os12t0506800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	19440718	19441025	.	+	.	Parent=Os12t0506800-01
Chr12	irgsp1_rep	five_prime_UTR	19441424	19441471	.	+	.	Parent=Os12t0506800-01
Chr12	irgsp1_rep	CDS	19441472	19441627	.	+	0	Parent=Os12t0506800-01
Chr12	irgsp1_rep	CDS	19441732	19441785	.	+	0	Parent=Os12t0506800-01
Chr12	irgsp1_rep	CDS	19441868	19441990	.	+	0	Parent=Os12t0506800-01
Chr12	irgsp1_rep	three_prime_UTR	19442178	19442277	.	+	.	Parent=Os12t0506800-01
Chr12	irgsp1_rep	three_prime_UTR	19442356	19442453	.	+	.	Parent=Os12t0506800-01
Chr12	irgsp1_rep	three_prime_UTR	19442544	19442744	.	+	.	Parent=Os12t0506800-01
Chr12	irgsp1_rep	three_prime_UTR	19443186	19443311	.	+	.	Parent=Os12t0506800-01
Chr12	irgsp1_rep	three_prime_UTR	19443427	19443617	.	+	.	Parent=Os12t0506800-01
Chr12	irgsp1_rep	mRNA	19452186	19456650	.	+	.	ID=Os12t0507000-01;Name=Os12t0507000-01;Locus_id=Os12g0507000;Note=Similar to Molybdopterin biosynthesis CNX2 protein (Molybdenum cofactor biosynthesis enzyme CNX2).;Transcript_evidence=AK065402 (DDBJ%2C Best hit);ORF_evidence=NP_850177.2 (RefSeq);GO=Biological Process: Mo-molybdopterin cofactor biosynthetic process (GO:0006777),Biological Process: metabolic process (GO:0008152),Cellular Component: molybdopterin synthase complex (GO:0019008),Molecular Function: catalytic activity (GO:0003824),Molecular Function: metal ion binding (GO:0046872),Molecular Function: iron-sulfur cluster binding (GO:0051536),Molecular Function: 4 iron%2C 4 sulfur cluster binding (GO:0051539);InterPro=MoaA/nifB/pqqE%2C iron-sulphur binding%2C conserved site (IPR000385),Elongator protein 3/MiaB/NifB (IPR006638),Radical SAM (IPR007197),Molybdenum cofactor synthesis C-terminal (IPR010505),Molybdenum cofactor biosynthesis protein A (IPR013483),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=J013009O17;Expression=AK065402;TENOR=Os12t0507000-01;KEGG=Os12t0507000-01
Chr12	irgsp1_rep	five_prime_UTR	19452186	19452256	.	+	.	Parent=Os12t0507000-01
Chr12	irgsp1_rep	five_prime_UTR	19452384	19452496	.	+	.	Parent=Os12t0507000-01
Chr12	irgsp1_rep	CDS	19452497	19452568	.	+	0	Parent=Os12t0507000-01
Chr12	irgsp1_rep	CDS	19452814	19453428	.	+	0	Parent=Os12t0507000-01
Chr12	irgsp1_rep	CDS	19453571	19453738	.	+	0	Parent=Os12t0507000-01
Chr12	irgsp1_rep	CDS	19453896	19454087	.	+	0	Parent=Os12t0507000-01
Chr12	irgsp1_rep	CDS	19454823	19454891	.	+	0	Parent=Os12t0507000-01
Chr12	irgsp1_rep	CDS	19455680	19455763	.	+	0	Parent=Os12t0507000-01
Chr12	irgsp1_rep	three_prime_UTR	19455764	19455764	.	+	.	Parent=Os12t0507000-01
Chr12	irgsp1_rep	three_prime_UTR	19456263	19456650	.	+	.	Parent=Os12t0507000-01
Chr12	irgsp1_rep	mRNA	19452498	19456611	.	+	.	ID=Os12t0507000-02;Name=Os12t0507000-02;Locus_id=Os12g0507000;Note=Similar to CNX2 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2)%3B catalytic.;Transcript_evidence=AK119769 (DDBJ%2C Best hit);ORF_evidence=NP_850177.2 (RefSeq);GO=Biological Process: Mo-molybdopterin cofactor biosynthetic process (GO:0006777),Biological Process: metabolic process (GO:0008152),Cellular Component: molybdopterin synthase complex (GO:0019008),Molecular Function: catalytic activity (GO:0003824),Molecular Function: metal ion binding (GO:0046872),Molecular Function: iron-sulfur cluster binding (GO:0051536),Molecular Function: 4 iron%2C 4 sulfur cluster binding (GO:0051539);InterPro=MoaA/nifB/pqqE%2C iron-sulphur binding%2C conserved site (IPR000385),Elongator protein 3/MiaB/NifB (IPR006638),Radical SAM (IPR007197),Molybdenum cofactor synthesis C-terminal (IPR010505),Molybdenum cofactor biosynthesis protein A (IPR013483),Aldolase-type TIM barrel (IPR013785);NIAS_FLcDNA=002-172-E12;Expression=AK119769;TENOR=Os12t0507000-02;KEGG=Os12t0507000-02
Chr12	irgsp1_rep	five_prime_UTR	19452498	19452499	.	+	.	Parent=Os12t0507000-02
Chr12	irgsp1_rep	CDS	19452500	19452568	.	+	0	Parent=Os12t0507000-02
Chr12	irgsp1_rep	CDS	19452814	19453428	.	+	0	Parent=Os12t0507000-02
Chr12	irgsp1_rep	CDS	19453571	19453738	.	+	0	Parent=Os12t0507000-02
Chr12	irgsp1_rep	CDS	19453896	19454087	.	+	0	Parent=Os12t0507000-02
Chr12	irgsp1_rep	CDS	19454823	19454891	.	+	0	Parent=Os12t0507000-02
Chr12	irgsp1_rep	CDS	19455680	19455763	.	+	0	Parent=Os12t0507000-02
Chr12	irgsp1_rep	three_prime_UTR	19455764	19455764	.	+	.	Parent=Os12t0507000-02
Chr12	irgsp1_rep	three_prime_UTR	19456263	19456611	.	+	.	Parent=Os12t0507000-02
Chr12	irgsp1_rep	mRNA	19462695	19465623	.	+	.	ID=Os12t0507200-01;Name=Os12t0507200-01;Locus_id=Os12g0507200;CGSNL Gene Symbol=EIF4D;CGSNL Gene Name=EUKARYOTIC INITIATION FACTOR 4D;Oryzabase Gene Symbol Synonym(s)=eIF-4d%2C EIF4D%2C elF-4D;Oryzabase Gene Name Synonym(s)=eukaryotic initiation factor 4D%2C initiation factor eIF-4D;Note=Similar to Eukaryotic translation initiation factor 5A-2 (eIF-5A-2) (eIF-4D).;Transcript_evidence=AK061867 (DDBJ%2C Best hit),AK099039 (DDBJ%2C Best hit);ORF_evidence=Q9ZSU2 (UniProt);GO=Biological Process: translational frameshifting (GO:0006452),Biological Process: peptidyl-lysine modification to hypusine (GO:0008612),Biological Process: positive regulation of translational elongation (GO:0045901),Biological Process: positive regulation of translational termination (GO:0045905),Molecular Function: RNA binding (GO:0003723),Molecular Function: translation elongation factor activity (GO:0003746),Molecular Function: ribosome binding (GO:0043022);InterPro=Translation elongation factor IF5A (IPR001884),KOW (IPR005824),Translation protein SH3-like (IPR008991),Nucleic acid-binding%2C OB-fold (IPR012340),Translation protein SH3-like%2C subgroup (IPR014722),Nucleic acid-binding%2C OB-fold-like (IPR016027),Translation elongation factor%2C IF5A%2C hypusine site (IPR019769),Translation elongation factor%2C IF5A C-terminal (IPR020189);NIAS_FLcDNA=001-040-H10,J013131C14;Oryzabase=15723;Expression=AK061867;TENOR=Os12t0507200-01;KEGG=Os12t0507200-01
Chr12	irgsp1_rep	five_prime_UTR	19462695	19462757	.	+	.	Parent=Os12t0507200-01
Chr12	irgsp1_rep	five_prime_UTR	19462860	19462896	.	+	.	Parent=Os12t0507200-01
Chr12	irgsp1_rep	CDS	19462897	19463022	.	+	0	Parent=Os12t0507200-01
Chr12	irgsp1_rep	CDS	19464165	19464287	.	+	0	Parent=Os12t0507200-01
Chr12	irgsp1_rep	CDS	19464373	19464429	.	+	0	Parent=Os12t0507200-01
Chr12	irgsp1_rep	CDS	19464518	19464592	.	+	0	Parent=Os12t0507200-01
Chr12	irgsp1_rep	CDS	19465144	19465245	.	+	0	Parent=Os12t0507200-01
Chr12	irgsp1_rep	three_prime_UTR	19465246	19465623	.	+	.	Parent=Os12t0507200-01
Chr12	irgsp1_rep	mRNA	19474766	19478135	.	+	.	ID=Os12t0507300-00;Name=Os12t0507300-00;Locus_id=Os12g0507300;CGSNL Gene Symbol=WRKY96;CGSNL Gene Name=WRKY GENE 96;Oryzabase Gene Symbol Synonym(s)=OsWRKY96;Note=Similar to WRKY DNA binding domain containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QQ47 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657);Literature_PMID=Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=9231;TENOR=Os12t0507300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	19474766	19474807	.	+	0	Parent=Os12t0507300-00
Chr12	irgsp1_rep	CDS	19474968	19475039	.	+	0	Parent=Os12t0507300-00
Chr12	irgsp1_rep	CDS	19475388	19476049	.	+	0	Parent=Os12t0507300-00
Chr12	irgsp1_rep	CDS	19476124	19476264	.	+	1	Parent=Os12t0507300-00
Chr12	irgsp1_rep	CDS	19477853	19478135	.	+	1	Parent=Os12t0507300-00
Chr12	irgsp1_rep	mRNA	19478322	19478591	.	+	.	ID=Os12t0507350-00;Name=Os12t0507350-00;Locus_id=Os12g0507350;Note=Non-protein coding transcript.;Transcript_evidence=CT835576 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os12t0507350-00
Chr12	irgsp1_rep	exon	19478322	19478591	.	+	.	Parent=Os12t0507350-00
Chr12	irgsp1_rep	mRNA	19481391	19482395	.	-	.	ID=Os12t0507400-00;Name=Os12t0507400-00;Locus_id=Os12g0507400;Note=Conserved hypothetical protein.;Transcript_evidence=EU968548 (DDBJ);ORF_evidence=NP_001066845.1 (RefSeq);TENOR=Os12t0507400-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	19482378	19482395	.	-	.	Parent=Os12t0507400-00
Chr12	irgsp1_rep	CDS	19481391	19482377	.	-	0	Parent=Os12t0507400-00
Chr12	irgsp1_rep	mRNA	19492147	19492760	.	-	.	ID=Os12t0507500-00;Name=Os12t0507500-00;Locus_id=Os12g0507500;Note=Similar to SWIB/MDM2 domain containing protein%2C expressed.;Transcript_evidence=AK363054 (DDBJ);ORF_evidence=Q2QQ44 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=SWIB/MDM2 domain (IPR003121);TENOR=Os12t0507500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	19492690	19492760	.	-	.	Parent=Os12t0507500-00
Chr12	irgsp1_rep	CDS	19492147	19492689	.	-	0	Parent=Os12t0507500-00
Chr12	irgsp1_rep	mRNA	19493189	19494888	.	+	.	ID=Os12t0507600-01;Name=Os12t0507600-01;Locus_id=Os12g0507600;Note=Conserved hypothetical protein.;Transcript_evidence=AK070613 (DDBJ%2C Best hit);ORF_evidence=B9GDC4 (UniProt);NIAS_FLcDNA=J023063G03;TENOR=Os12t0507600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	19493189	19493264	.	+	.	Parent=Os12t0507600-01
Chr12	irgsp1_rep	five_prime_UTR	19493397	19493441	.	+	.	Parent=Os12t0507600-01
Chr12	irgsp1_rep	five_prime_UTR	19494436	19494550	.	+	.	Parent=Os12t0507600-01
Chr12	irgsp1_rep	CDS	19494551	19494730	.	+	0	Parent=Os12t0507600-01
Chr12	irgsp1_rep	three_prime_UTR	19494731	19494888	.	+	.	Parent=Os12t0507600-01
Chr12	irgsp1_rep	mRNA	19494653	19494900	.	+	.	ID=Os12t0507600-02;Name=Os12t0507600-02;Locus_id=Os12g0507600;Note=Hypothetical conserved gene.;Transcript_evidence=AK058298 (DDBJ%2C Best hit);ORF_evidence=B9GDC4 (UniProt);NIAS_FLcDNA=001-013-F07;Expression=AK058298;TENOR=Os12t0507600-02;KEGG=Os12t0507600-02
Chr12	irgsp1_rep	CDS	19494653	19494730	.	+	0	Parent=Os12t0507600-02
Chr12	irgsp1_rep	three_prime_UTR	19494731	19494900	.	+	.	Parent=Os12t0507600-02
Chr12	irgsp1_rep	mRNA	19495194	19495999	.	-	.	ID=Os12t0507700-00;Name=Os12t0507700-00;Locus_id=Os12g0507700;Note=Similar to predicted protein.;Transcript_evidence=AK335280 (DDBJ);ORF_evidence=NP_001066848.2 (RefSeq);TENOR=Os12t0507700-00;KEGG=Os12t0507700-00
Chr12	irgsp1_rep	five_prime_UTR	19495907	19495999	.	-	.	Parent=Os12t0507700-00
Chr12	irgsp1_rep	CDS	19495866	19495906	.	-	0	Parent=Os12t0507700-00
Chr12	irgsp1_rep	CDS	19495420	19495678	.	-	1	Parent=Os12t0507700-00
Chr12	irgsp1_rep	three_prime_UTR	19495194	19495419	.	-	.	Parent=Os12t0507700-00
Chr12	irgsp1_rep	mRNA	19513276	19518576	.	+	.	ID=Os12t0508100-00;Name=Os12t0508100-00;Locus_id=Os12g0508100;Note=Acrosin precursor (EC 3.4.21.10) (53 kDa fucose-binding protein).;Transcript_evidence=BT042274 (DDBJ);ORF_evidence=B4FYT6 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Mpv17/PMP22 (IPR007248);TENOR=Os12t0508100-00;KEGG=Os12t0508100-00 (EC:3.4.21.10)
Chr12	irgsp1_rep	five_prime_UTR	19513276	19513310	.	+	.	Parent=Os12t0508100-00
Chr12	irgsp1_rep	CDS	19513311	19513667	.	+	0	Parent=Os12t0508100-00
Chr12	irgsp1_rep	CDS	19515897	19516125	.	+	0	Parent=Os12t0508100-00
Chr12	irgsp1_rep	CDS	19517896	19518020	.	+	2	Parent=Os12t0508100-00
Chr12	irgsp1_rep	CDS	19518098	19518196	.	+	0	Parent=Os12t0508100-00
Chr12	irgsp1_rep	three_prime_UTR	19518197	19518576	.	+	.	Parent=Os12t0508100-00
Chr12	irgsp1_rep	mRNA	19518760	19521002	.	-	.	ID=Os12t0508200-01;Name=Os12t0508200-01;Locus_id=Os12g0508200;Note=Conserved hypothetical protein.;Transcript_evidence=AK069349 (DDBJ%2C Best hit);ORF_evidence=A2ZKX6 (UniProt);NIAS_FLcDNA=J023017L09;TENOR=Os12t0508200-01
Chr12	irgsp1_rep	five_prime_UTR	19520846	19521002	.	-	.	Parent=Os12t0508200-01
Chr12	irgsp1_rep	five_prime_UTR	19519513	19519554	.	-	.	Parent=Os12t0508200-01
Chr12	irgsp1_rep	CDS	19519453	19519512	.	-	0	Parent=Os12t0508200-01
Chr12	irgsp1_rep	CDS	19518899	19519306	.	-	0	Parent=Os12t0508200-01
Chr12	irgsp1_rep	three_prime_UTR	19518760	19518898	.	-	.	Parent=Os12t0508200-01
Chr12	irgsp1_rep	mRNA	19518771	19520974	.	-	.	ID=Os12t0508200-02;Name=Os12t0508200-02;Locus_id=Os12g0508200;Note=Conserved hypothetical protein.;Transcript_evidence=AK099463 (DDBJ%2C Best hit);ORF_evidence=A2ZKX6 (UniProt);NIAS_FLcDNA=J013023H09;TENOR=Os12t0508200-02
Chr12	irgsp1_rep	five_prime_UTR	19520846	19520974	.	-	.	Parent=Os12t0508200-02
Chr12	irgsp1_rep	five_prime_UTR	19519513	19519554	.	-	.	Parent=Os12t0508200-02
Chr12	irgsp1_rep	CDS	19519453	19519512	.	-	0	Parent=Os12t0508200-02
Chr12	irgsp1_rep	CDS	19518899	19519306	.	-	0	Parent=Os12t0508200-02
Chr12	irgsp1_rep	three_prime_UTR	19518771	19518898	.	-	.	Parent=Os12t0508200-02
Chr12	irgsp1_rep	mRNA	19531967	19534815	.	-	.	ID=Os12t0508266-01;Name=Os12t0508266-01;Locus_id=Os12g0508266;Note=Histone deacetylase superfamily protein.;Transcript_evidence=AK243557 (DDBJ%2C Best hit);ORF_evidence=B4FWF5 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C UBP-type (IPR001607),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J100079P21;TENOR=Os12t0508266-01;KEGG=Os12t0508266-01 (EC:3.5.1.98)
Chr12	irgsp1_rep	five_prime_UTR	19534773	19534815	.	-	.	Parent=Os12t0508266-01
Chr12	irgsp1_rep	CDS	19534707	19534772	.	-	0	Parent=Os12t0508266-01
Chr12	irgsp1_rep	CDS	19534428	19534618	.	-	0	Parent=Os12t0508266-01
Chr12	irgsp1_rep	CDS	19532804	19532929	.	-	1	Parent=Os12t0508266-01
Chr12	irgsp1_rep	CDS	19532102	19532282	.	-	1	Parent=Os12t0508266-01
Chr12	irgsp1_rep	three_prime_UTR	19531967	19532101	.	-	.	Parent=Os12t0508266-01
Chr12	irgsp1_rep	mRNA	19536639	19538295	.	+	.	ID=Os12t0508300-01;Name=Os12t0508300-01;Locus_id=Os12g0508300;Note=40S ribosomal protein S29.;Transcript_evidence=AK059123 (DDBJ%2C Best hit);ORF_evidence=A2ZG71 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S14 (IPR001209);NIAS_FLcDNA=001-022-F08;Expression=AK059123;TENOR=Os12t0508300-01;KEGG=Os12t0508300-01
Chr12	irgsp1_rep	five_prime_UTR	19536639	19536725	.	+	.	Parent=Os12t0508300-01
Chr12	irgsp1_rep	CDS	19536726	19536787	.	+	0	Parent=Os12t0508300-01
Chr12	irgsp1_rep	CDS	19537338	19537437	.	+	1	Parent=Os12t0508300-01
Chr12	irgsp1_rep	CDS	19538088	19538096	.	+	0	Parent=Os12t0508300-01
Chr12	irgsp1_rep	three_prime_UTR	19538097	19538295	.	+	.	Parent=Os12t0508300-01
Chr12	irgsp1_rep	mRNA	19543820	19544475	.	+	.	ID=Os12t0508400-00;Name=Os12t0508400-00;Locus_id=Os12g0508400;Note=Conserved hypothetical protein.;Transcript_evidence=CT835595 (DDBJ%2C Best hit);ORF_evidence=NP_001066852.1 (RefSeq);TENOR=Os12t0508400-00;KEGG=Os12t0508400-00
Chr12	irgsp1_rep	five_prime_UTR	19543820	19543864	.	+	.	Parent=Os12t0508400-00
Chr12	irgsp1_rep	CDS	19543865	19544173	.	+	0	Parent=Os12t0508400-00
Chr12	irgsp1_rep	three_prime_UTR	19544174	19544223	.	+	.	Parent=Os12t0508400-00
Chr12	irgsp1_rep	three_prime_UTR	19544264	19544475	.	+	.	Parent=Os12t0508400-00
Chr12	irgsp1_rep	mRNA	19546556	19547564	.	+	.	ID=Os12t0508500-01;Name=Os12t0508500-01;Locus_id=Os12g0508500;RAP-DB Gene Symbol Synonym(s)=OsbHLH133;RAP-DB Gene Name Synonym(s)=basic helix-loop-helix protein 133;Oryzabase Gene Symbol Synonym(s)=OsbHLH133%2C bHLH133%2C OsRSL8%2C RSL8;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 133%2C ROOT HAIR DEFECTIVE-SIX LIKE 8;Note=bHLH transcription factor%2C Regulation of iron distribution;Transcript_evidence=Q2QQ32 (UniProt);ORF_evidence=Q2QQ32;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Helix-loop-helix DNA-binding domain superfamily (IPR036638),Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);Manual Curation=August 5%2C 2020;Literature_PMID=22755510;Oryzabase=11128;TENOR=Os12t0508500-00
Chr12	irgsp1_rep	CDS	19546556	19546867	.	+	0	Parent=Os12t0508500-01
Chr12	irgsp1_rep	CDS	19546958	19547017	.	+	0	Parent=Os12t0508500-01
Chr12	irgsp1_rep	CDS	19547095	19547160	.	+	0	Parent=Os12t0508500-01
Chr12	irgsp1_rep	CDS	19547236	19547301	.	+	0	Parent=Os12t0508500-01
Chr12	irgsp1_rep	CDS	19547472	19547564	.	+	0	Parent=Os12t0508500-01
Chr12	irgsp1_rep	mRNA	19596995	19602216	.	+	.	ID=Os12t0509100-01;Name=Os12t0509100-01;Locus_id=Os12g0509100;Note=Conserved hypothetical protein.;Transcript_evidence=AK069468 (DDBJ%2C Best hit);ORF_evidence=B9GDC9 (UniProt);NIAS_FLcDNA=J023024P20;Expression=AK069468;TENOR=Os12t0509100-01;KEGG=Os12t0509100-01
Chr12	irgsp1_rep	five_prime_UTR	19596995	19597537	.	+	.	Parent=Os12t0509100-01
Chr12	irgsp1_rep	five_prime_UTR	19597806	19597910	.	+	.	Parent=Os12t0509100-01
Chr12	irgsp1_rep	five_prime_UTR	19598152	19598210	.	+	.	Parent=Os12t0509100-01
Chr12	irgsp1_rep	CDS	19598938	19599353	.	+	0	Parent=Os12t0509100-01
Chr12	irgsp1_rep	CDS	19600013	19600148	.	+	1	Parent=Os12t0509100-01
Chr12	irgsp1_rep	three_prime_UTR	19600149	19600265	.	+	.	Parent=Os12t0509100-01
Chr12	irgsp1_rep	three_prime_UTR	19600342	19600585	.	+	.	Parent=Os12t0509100-01
Chr12	irgsp1_rep	three_prime_UTR	19600854	19600975	.	+	.	Parent=Os12t0509100-01
Chr12	irgsp1_rep	three_prime_UTR	19601967	19602216	.	+	.	Parent=Os12t0509100-01
Chr12	irgsp1_rep	mRNA	19608951	19611819	.	+	.	ID=Os12t0509200-01;Name=Os12t0509200-01;Locus_id=Os12g0509200;Note=Conserved hypothetical protein.;Transcript_evidence=AK105279 (DDBJ%2C Best hit);ORF_evidence=B9GDD0 (UniProt);NIAS_FLcDNA=001-116-B08;Expression=AK105279;TENOR=Os12t0509200-01;KEGG=Os12t0509200-01
Chr12	irgsp1_rep	five_prime_UTR	19608951	19609047	.	+	.	Parent=Os12t0509200-01
Chr12	irgsp1_rep	CDS	19609048	19609241	.	+	0	Parent=Os12t0509200-01
Chr12	irgsp1_rep	CDS	19609355	19609468	.	+	1	Parent=Os12t0509200-01
Chr12	irgsp1_rep	CDS	19610091	19611126	.	+	1	Parent=Os12t0509200-01
Chr12	irgsp1_rep	three_prime_UTR	19611127	19611132	.	+	.	Parent=Os12t0509200-01
Chr12	irgsp1_rep	three_prime_UTR	19611224	19611819	.	+	.	Parent=Os12t0509200-01
Chr12	irgsp1_rep	mRNA	19611096	19612151	.	-	.	ID=Os12t0509300-01;Name=Os12t0509300-01;Locus_id=Os12g0509300;Note=Conserved hypothetical protein.;Transcript_evidence=AK108497 (DDBJ%2C Best hit);ORF_evidence=A2ZKY4 (UniProt);NIAS_FLcDNA=002-143-G12;Expression=AK108497;TENOR=Os12t0509300-01;KEGG=Os12t0509300-01
Chr12	irgsp1_rep	five_prime_UTR	19611936	19612151	.	-	.	Parent=Os12t0509300-01
Chr12	irgsp1_rep	CDS	19611890	19611935	.	-	0	Parent=Os12t0509300-01
Chr12	irgsp1_rep	CDS	19611178	19611770	.	-	2	Parent=Os12t0509300-01
Chr12	irgsp1_rep	three_prime_UTR	19611096	19611177	.	-	.	Parent=Os12t0509300-01
Chr12	irgsp1_rep	mRNA	19612303	19622928	.	+	.	ID=Os12t0509400-01;Name=Os12t0509400-01;Locus_id=Os12g0509400;Note=Similar to Nicalin.;Transcript_evidence=AK072889 (DDBJ%2C Best hit);ORF_evidence=B6TVH8 (UniProt);NIAS_FLcDNA=J023149L18;TENOR=Os12t0509400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	19612303	19612509	.	+	.	Parent=Os12t0509400-01
Chr12	irgsp1_rep	five_prime_UTR	19614197	19614270	.	+	.	Parent=Os12t0509400-01
Chr12	irgsp1_rep	five_prime_UTR	19615053	19615100	.	+	.	Parent=Os12t0509400-01
Chr12	irgsp1_rep	five_prime_UTR	19615609	19616785	.	+	.	Parent=Os12t0509400-01
Chr12	irgsp1_rep	CDS	19616786	19616811	.	+	0	Parent=Os12t0509400-01
Chr12	irgsp1_rep	CDS	19620118	19620241	.	+	1	Parent=Os12t0509400-01
Chr12	irgsp1_rep	CDS	19620431	19620529	.	+	0	Parent=Os12t0509400-01
Chr12	irgsp1_rep	CDS	19621443	19621463	.	+	0	Parent=Os12t0509400-01
Chr12	irgsp1_rep	three_prime_UTR	19621464	19621490	.	+	.	Parent=Os12t0509400-01
Chr12	irgsp1_rep	three_prime_UTR	19622639	19622928	.	+	.	Parent=Os12t0509400-01
Chr12	irgsp1_rep	mRNA	19612312	19618477	.	+	.	ID=Os12t0509400-02;Name=Os12t0509400-02;Locus_id=Os12g0509400;Note=Conserved hypothetical protein.;Transcript_evidence=AK070590 (DDBJ%2C Best hit);ORF_evidence=Q2QQ22 (UniProt);NIAS_FLcDNA=J023057J16;TENOR=Os12t0509400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	19612312	19612509	.	+	.	Parent=Os12t0509400-02
Chr12	irgsp1_rep	five_prime_UTR	19614207	19614270	.	+	.	Parent=Os12t0509400-02
Chr12	irgsp1_rep	five_prime_UTR	19615053	19615100	.	+	.	Parent=Os12t0509400-02
Chr12	irgsp1_rep	five_prime_UTR	19615524	19616463	.	+	.	Parent=Os12t0509400-02
Chr12	irgsp1_rep	CDS	19616464	19616877	.	+	0	Parent=Os12t0509400-02
Chr12	irgsp1_rep	three_prime_UTR	19616878	19616930	.	+	.	Parent=Os12t0509400-02
Chr12	irgsp1_rep	three_prime_UTR	19617760	19617884	.	+	.	Parent=Os12t0509400-02
Chr12	irgsp1_rep	three_prime_UTR	19618250	19618477	.	+	.	Parent=Os12t0509400-02
Chr12	irgsp1_rep	mRNA	19628116	19630317	.	+	.	ID=Os12t0509600-00;Name=Os12t0509600-00;Locus_id=Os12g0509600;Oryzabase Gene Symbol Synonym(s)=OsSTA285;Note=Beta-ketoacyl synthase%2C active site domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001066857.2 (RefSeq);Oryzabase=19539;TENOR=Os12t0509600-00;KEGG=Os12t0509600-00
Chr12	irgsp1_rep	CDS	19628116	19629113	.	+	0	Parent=Os12t0509600-00
Chr12	irgsp1_rep	CDS	19630106	19630192	.	+	1	Parent=Os12t0509600-00
Chr12	irgsp1_rep	CDS	19630287	19630317	.	+	1	Parent=Os12t0509600-00
Chr12	irgsp1_rep	mRNA	19638455	19638946	.	-	.	ID=Os12t0509900-00;Name=Os12t0509900-00;Locus_id=Os12g0509900;Note=Hypothetical conserved gene.;Transcript_evidence=CT835550 (DDBJ%2C Best hit);ORF_evidence=B9GDD3 (UniProt);TENOR=Os12t0509900-00;KEGG=Os12t0509900-00
Chr12	irgsp1_rep	five_prime_UTR	19638946	19638946	.	-	.	Parent=Os12t0509900-00
Chr12	irgsp1_rep	CDS	19638882	19638945	.	-	0	Parent=Os12t0509900-00
Chr12	irgsp1_rep	CDS	19638682	19638761	.	-	2	Parent=Os12t0509900-00
Chr12	irgsp1_rep	three_prime_UTR	19638455	19638681	.	-	.	Parent=Os12t0509900-00
Chr12	irgsp1_rep	mRNA	19642566	19645453	.	+	.	ID=Os12t0510000-01;Name=Os12t0510000-01;Locus_id=Os12g0510000;Note=Conserved hypothetical protein.;Transcript_evidence=AK101963 (DDBJ%2C Best hit);ORF_evidence=B9GDD2 (UniProt);NIAS_FLcDNA=J033076D23;TENOR=Os12t0510000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	19642566	19643352	.	+	.	Parent=Os12t0510000-01
Chr12	irgsp1_rep	CDS	19643353	19643539	.	+	0	Parent=Os12t0510000-01
Chr12	irgsp1_rep	CDS	19643620	19643690	.	+	2	Parent=Os12t0510000-01
Chr12	irgsp1_rep	three_prime_UTR	19643691	19643794	.	+	.	Parent=Os12t0510000-01
Chr12	irgsp1_rep	three_prime_UTR	19643896	19643996	.	+	.	Parent=Os12t0510000-01
Chr12	irgsp1_rep	three_prime_UTR	19644732	19644819	.	+	.	Parent=Os12t0510000-01
Chr12	irgsp1_rep	three_prime_UTR	19645105	19645453	.	+	.	Parent=Os12t0510000-01
Chr12	irgsp1_rep	mRNA	19642586	19650215	.	+	.	ID=Os12t0510000-02;Name=Os12t0510000-02;Locus_id=Os12g0510000;Note=Conserved hypothetical protein.;Transcript_evidence=AK121894 (DDBJ%2C Best hit);ORF_evidence=A3CHS1 (UniProt);NIAS_FLcDNA=J033105D07;Expression=AK121894;TENOR=Os12t0510000-02;KEGG=Os12t0510000-02
Chr12	irgsp1_rep	five_prime_UTR	19642586	19643539	.	+	.	Parent=Os12t0510000-02
Chr12	irgsp1_rep	five_prime_UTR	19643620	19643996	.	+	.	Parent=Os12t0510000-02
Chr12	irgsp1_rep	five_prime_UTR	19644732	19644819	.	+	.	Parent=Os12t0510000-02
Chr12	irgsp1_rep	five_prime_UTR	19645112	19647113	.	+	.	Parent=Os12t0510000-02
Chr12	irgsp1_rep	CDS	19647114	19647176	.	+	0	Parent=Os12t0510000-02
Chr12	irgsp1_rep	CDS	19648453	19648634	.	+	0	Parent=Os12t0510000-02
Chr12	irgsp1_rep	CDS	19648825	19649011	.	+	1	Parent=Os12t0510000-02
Chr12	irgsp1_rep	CDS	19649885	19649893	.	+	0	Parent=Os12t0510000-02
Chr12	irgsp1_rep	three_prime_UTR	19649894	19650215	.	+	.	Parent=Os12t0510000-02
Chr12	irgsp1_rep	mRNA	19657007	19660520	.	-	.	ID=Os12t0510200-01;Name=Os12t0510200-01;Locus_id=Os12g0510200;Note=Conserved hypothetical protein.;Transcript_evidence=AK318602 (DDBJ%2C Best hit);ORF_evidence=B9GDD4 (UniProt);NIAS_FLcDNA=J100068E03;TENOR=Os12t0510200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	19658007	19660520	.	-	.	Parent=Os12t0510200-01
Chr12	irgsp1_rep	CDS	19657963	19658006	.	-	0	Parent=Os12t0510200-01
Chr12	irgsp1_rep	CDS	19657741	19657864	.	-	1	Parent=Os12t0510200-01
Chr12	irgsp1_rep	three_prime_UTR	19657007	19657740	.	-	.	Parent=Os12t0510200-01
Chr12	irgsp1_rep	mRNA	19663449	19667757	.	+	.	ID=Os12t0510500-01;Name=Os12t0510500-01;Locus_id=Os12g0510500;Note=Conserved hypothetical protein.;Transcript_evidence=AK066140 (DDBJ%2C Best hit),AK098997 (DDBJ%2C Best hit);ORF_evidence=A2ZKZ1 (UniProt);NIAS_FLcDNA=J013055F19,J013102C19;TENOR=Os12t0510500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	19663449	19663612	.	+	.	Parent=Os12t0510500-01
Chr12	irgsp1_rep	CDS	19663613	19663903	.	+	0	Parent=Os12t0510500-01
Chr12	irgsp1_rep	three_prime_UTR	19663904	19663956	.	+	.	Parent=Os12t0510500-01
Chr12	irgsp1_rep	three_prime_UTR	19665094	19667757	.	+	.	Parent=Os12t0510500-01
Chr12	irgsp1_rep	mRNA	19675656	19676282	.	-	.	ID=Os12t0510750-00;Name=Os12t0510750-00;Locus_id=Os12g0510750;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QQ11 (UniProt);TENOR=Os12t0510750-00;KEGG=Os12t0510750-00
Chr12	irgsp1_rep	CDS	19675656	19676282	.	-	0	Parent=Os12t0510750-00
Chr12	irgsp1_rep	mRNA	19681249	19681786	.	-	.	ID=Os12t0510766-00;Name=Os12t0510766-00;Locus_id=Os12g0510766;Note=Non-protein coding transcript.;Transcript_evidence=EU942847 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0510766-00
Chr12	irgsp1_rep	exon	19681654	19681786	.	-	.	Parent=Os12t0510766-00
Chr12	irgsp1_rep	exon	19681249	19681494	.	-	.	Parent=Os12t0510766-00
Chr12	irgsp1_rep	mRNA	19681340	19682064	.	+	.	ID=Os12t0510900-01;Name=Os12t0510900-01;Locus_id=Os12g0510900;Note=Similar to LIM domain protein WLIM-1.;Transcript_evidence=AK058220 (DDBJ%2C Best hit);ORF_evidence=Q2QQ10 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C LIM-type (IPR001781);NIAS_FLcDNA=001-010-F09;Expression=AK058220;TENOR=Os12t0510900-01;KEGG=Os12t0510900-01
Chr12	irgsp1_rep	CDS	19681340	19681423	.	+	0	Parent=Os12t0510900-01
Chr12	irgsp1_rep	CDS	19681661	19681882	.	+	0	Parent=Os12t0510900-01
Chr12	irgsp1_rep	three_prime_UTR	19681883	19682064	.	+	.	Parent=Os12t0510900-01
Chr12	irgsp1_rep	mRNA	19684833	19687877	.	-	.	ID=Os12t0511000-01;Name=Os12t0511000-01;Locus_id=Os12g0511000;Oryzabase Gene Symbol Synonym(s)=OsFbox656;Oryzabase Gene Name Synonym(s)=F-box protein 656;Note=Similar to F-box domain containing protein%2C expressed.;Transcript_evidence=AK241657 (DDBJ%2C Best hit);ORF_evidence=Q2QQ08 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J065191E23;Oryzabase=17416;TENOR=Os12t0511000-01;KEGG=Os12t0511000-01
Chr12	irgsp1_rep	five_prime_UTR	19687760	19687877	.	-	.	Parent=Os12t0511000-01
Chr12	irgsp1_rep	CDS	19687004	19687759	.	-	0	Parent=Os12t0511000-01
Chr12	irgsp1_rep	CDS	19685116	19685559	.	-	0	Parent=Os12t0511000-01
Chr12	irgsp1_rep	three_prime_UTR	19684833	19685115	.	-	.	Parent=Os12t0511000-01
Chr12	irgsp1_rep	mRNA	19694851	19698144	.	+	.	ID=Os12t0511200-01;Name=Os12t0511200-01;Locus_id=Os12g0511200;Note=Hly-III related domain containing protein.;Transcript_evidence=AK106737 (DDBJ%2C Best hit);ORF_evidence=A3CHS8 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Hly-III-related (IPR004254);NIAS_FLcDNA=002-115-A11;Expression=AK106737;TENOR=Os12t0511200-01;KEGG=Os12t0511200-01
Chr12	irgsp1_rep	five_prime_UTR	19694851	19695098	.	+	.	Parent=Os12t0511200-01
Chr12	irgsp1_rep	CDS	19695099	19695364	.	+	0	Parent=Os12t0511200-01
Chr12	irgsp1_rep	CDS	19695545	19695884	.	+	1	Parent=Os12t0511200-01
Chr12	irgsp1_rep	CDS	19697401	19698051	.	+	0	Parent=Os12t0511200-01
Chr12	irgsp1_rep	three_prime_UTR	19698052	19698144	.	+	.	Parent=Os12t0511200-01
Chr12	irgsp1_rep	mRNA	19701010	19704224	.	+	.	ID=Os12t0511300-01;Name=Os12t0511300-01;Locus_id=Os12g0511300;RAP-DB Gene Symbol Synonym(s)=OsCLT2;Oryzabase Gene Symbol Synonym(s)=OsCLT2%2C CLT2;Oryzabase Gene Name Synonym(s)=CRT-like transporter 2;Note=CLT(CRT-like transporter) protein containing no plastid target signal peptide;Transcript_evidence=AK064077;ORF_evidence=Q2QQ06;InterPro=Chloroquine-resistance transporter-like (IPR013936);NIAS_FLcDNA=002-100-A07;Manual Curation=April 11%2C 2016;Literature_PMID=26918637;Oryzabase=21046;Expression=AK064077;TENOR=Os12t0511300-01;KEGG=Os12t0511300-01
Chr12	irgsp1_rep	five_prime_UTR	19701010	19701226	.	+	.	Parent=Os12t0511300-01
Chr12	irgsp1_rep	CDS	19701227	19701363	.	+	0	Parent=Os12t0511300-01
Chr12	irgsp1_rep	CDS	19701473	19701618	.	+	1	Parent=Os12t0511300-01
Chr12	irgsp1_rep	CDS	19701779	19701816	.	+	2	Parent=Os12t0511300-01
Chr12	irgsp1_rep	CDS	19702230	19702345	.	+	0	Parent=Os12t0511300-01
Chr12	irgsp1_rep	CDS	19702568	19702667	.	+	1	Parent=Os12t0511300-01
Chr12	irgsp1_rep	CDS	19702757	19702792	.	+	0	Parent=Os12t0511300-01
Chr12	irgsp1_rep	CDS	19702944	19702994	.	+	0	Parent=Os12t0511300-01
Chr12	irgsp1_rep	CDS	19703126	19703249	.	+	0	Parent=Os12t0511300-01
Chr12	irgsp1_rep	CDS	19703539	19703664	.	+	2	Parent=Os12t0511300-01
Chr12	irgsp1_rep	CDS	19703792	19703949	.	+	2	Parent=Os12t0511300-01
Chr12	irgsp1_rep	three_prime_UTR	19703950	19704224	.	+	.	Parent=Os12t0511300-01
Chr12	irgsp1_rep	mRNA	19701042	19708015	.	+	.	ID=Os12t0511300-02;Name=Os12t0511300-02;Locus_id=Os12g0511300;Oryzabase Gene Symbol Synonym(s)=OsCLT2%2C CLT2;Oryzabase Gene Name Synonym(s)=CRT-like transporter 2;Note=UAA transporter domain containing protein.;Transcript_evidence=AK121419 (DDBJ%2C Best hit);ORF_evidence=B8BM45 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085);InterPro=UAA transporter (IPR013657);NIAS_FLcDNA=J023133J11;Oryzabase=21046;Expression=AK121419;TENOR=Os12t0511300-02;KEGG=Os12t0511300-02
Chr12	irgsp1_rep	five_prime_UTR	19701042	19701226	.	+	.	Parent=Os12t0511300-02
Chr12	irgsp1_rep	CDS	19701227	19701363	.	+	0	Parent=Os12t0511300-02
Chr12	irgsp1_rep	CDS	19701473	19701618	.	+	1	Parent=Os12t0511300-02
Chr12	irgsp1_rep	CDS	19701779	19701816	.	+	2	Parent=Os12t0511300-02
Chr12	irgsp1_rep	CDS	19702230	19702345	.	+	0	Parent=Os12t0511300-02
Chr12	irgsp1_rep	CDS	19702568	19702667	.	+	1	Parent=Os12t0511300-02
Chr12	irgsp1_rep	CDS	19702757	19702792	.	+	0	Parent=Os12t0511300-02
Chr12	irgsp1_rep	CDS	19702944	19702994	.	+	0	Parent=Os12t0511300-02
Chr12	irgsp1_rep	CDS	19703126	19703249	.	+	0	Parent=Os12t0511300-02
Chr12	irgsp1_rep	CDS	19703539	19703664	.	+	2	Parent=Os12t0511300-02
Chr12	irgsp1_rep	CDS	19703792	19703949	.	+	2	Parent=Os12t0511300-02
Chr12	irgsp1_rep	three_prime_UTR	19703950	19708015	.	+	.	Parent=Os12t0511300-02
Chr12	irgsp1_rep	mRNA	19701221	19704904	.	+	.	ID=Os12t0511300-03;Name=Os12t0511300-03;Locus_id=Os12g0511300;Oryzabase Gene Symbol Synonym(s)=OsCLT2%2C CLT2;Oryzabase Gene Name Synonym(s)=CRT-like transporter 2;Note=UAA transporter domain containing protein.;Transcript_evidence=AK109892 (DDBJ%2C Best hit);ORF_evidence=B8BM45 (UniProt);GO=Biological Process: transmembrane transport (GO:0055085);InterPro=UAA transporter (IPR013657);NIAS_FLcDNA=002-149-E06;Oryzabase=21046;Expression=AK109892;TENOR=Os12t0511300-03;KEGG=Os12t0511300-03
Chr12	irgsp1_rep	five_prime_UTR	19701221	19701226	.	+	.	Parent=Os12t0511300-03
Chr12	irgsp1_rep	CDS	19701227	19701363	.	+	0	Parent=Os12t0511300-03
Chr12	irgsp1_rep	CDS	19701473	19701618	.	+	1	Parent=Os12t0511300-03
Chr12	irgsp1_rep	CDS	19701779	19701816	.	+	2	Parent=Os12t0511300-03
Chr12	irgsp1_rep	CDS	19702230	19702345	.	+	0	Parent=Os12t0511300-03
Chr12	irgsp1_rep	CDS	19702568	19702667	.	+	1	Parent=Os12t0511300-03
Chr12	irgsp1_rep	CDS	19702757	19702792	.	+	0	Parent=Os12t0511300-03
Chr12	irgsp1_rep	CDS	19702944	19702994	.	+	0	Parent=Os12t0511300-03
Chr12	irgsp1_rep	CDS	19703126	19703249	.	+	0	Parent=Os12t0511300-03
Chr12	irgsp1_rep	CDS	19703539	19703664	.	+	2	Parent=Os12t0511300-03
Chr12	irgsp1_rep	CDS	19703792	19703949	.	+	2	Parent=Os12t0511300-03
Chr12	irgsp1_rep	three_prime_UTR	19703950	19704904	.	+	.	Parent=Os12t0511300-03
Chr12	irgsp1_rep	mRNA	19706856	19710182	.	-	.	ID=Os12t0511400-01;Name=Os12t0511400-01;Locus_id=Os12g0511400;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=AK105287 (DDBJ%2C Best hit);ORF_evidence=Q2QQ03 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=001-116-E12;TENOR=Os12t0511400-01
Chr12	irgsp1_rep	five_prime_UTR	19709695	19710182	.	-	.	Parent=Os12t0511400-01
Chr12	irgsp1_rep	CDS	19709395	19709694	.	-	0	Parent=Os12t0511400-01
Chr12	irgsp1_rep	CDS	19706856	19709067	.	-	0	Parent=Os12t0511400-01
Chr12	irgsp1_rep	mRNA	19704242	19710164	.	-	.	ID=Os12t0511400-02;Name=Os12t0511400-02;Locus_id=Os12g0511400;Note=NB-ARC domain containing protein.;Transcript_evidence=AK065947 (DDBJ%2C Best hit);ORF_evidence=Q2QQ03 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013047A22;Expression=AK065947;TENOR=Os12t0511400-02;KEGG=Os12t0511400-02
Chr12	irgsp1_rep	five_prime_UTR	19709695	19710164	.	-	.	Parent=Os12t0511400-02
Chr12	irgsp1_rep	CDS	19705965	19709694	.	-	0	Parent=Os12t0511400-02
Chr12	irgsp1_rep	CDS	19705320	19705405	.	-	2	Parent=Os12t0511400-02
Chr12	irgsp1_rep	three_prime_UTR	19705160	19705319	.	-	.	Parent=Os12t0511400-02
Chr12	irgsp1_rep	three_prime_UTR	19704242	19704644	.	-	.	Parent=Os12t0511400-02
Chr12	irgsp1_rep	mRNA	19716428	19719253	.	-	.	ID=Os12t0511500-01;Name=Os12t0511500-01;Locus_id=Os12g0511500;Note=Disease resistance protein domain containing protein.;Transcript_evidence=AK070722 (DDBJ%2C Best hit);ORF_evidence=B9GDE1 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J023057B03;TENOR=Os12t0511500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	19717706	19719253	.	-	0	Parent=Os12t0511500-01
Chr12	irgsp1_rep	three_prime_UTR	19716428	19717705	.	-	.	Parent=Os12t0511500-01
Chr12	irgsp1_rep	mRNA	19729777	19734112	.	-	.	ID=Os12t0511600-00;Name=Os12t0511600-00;Locus_id=Os12g0511600;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QQ03 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os12t0511600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	19730452	19734112	.	-	0	Parent=Os12t0511600-00
Chr12	irgsp1_rep	CDS	19729777	19729859	.	-	2	Parent=Os12t0511600-00
Chr12	irgsp1_rep	mRNA	19736299	19739524	.	-	.	ID=Os12t0511750-00;Name=Os12t0511750-00;Locus_id=Os12g0511750;Note=Nucleic acid-binding%2C OB-fold domain containing protein.;Transcript_evidence=AK287637 (DDBJ%2C Secondary hit);ORF_evidence=NP_001175163.1 (RefSeq);InterPro=Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027);TENOR=Os12t0511750-00
Chr12	irgsp1_rep	five_prime_UTR	19739523	19739524	.	-	.	Parent=Os12t0511750-00
Chr12	irgsp1_rep	CDS	19739391	19739522	.	-	0	Parent=Os12t0511750-00
Chr12	irgsp1_rep	CDS	19739038	19739311	.	-	0	Parent=Os12t0511750-00
Chr12	irgsp1_rep	CDS	19738916	19738944	.	-	2	Parent=Os12t0511750-00
Chr12	irgsp1_rep	three_prime_UTR	19738458	19738915	.	-	.	Parent=Os12t0511750-00
Chr12	irgsp1_rep	three_prime_UTR	19738290	19738371	.	-	.	Parent=Os12t0511750-00
Chr12	irgsp1_rep	three_prime_UTR	19738083	19738203	.	-	.	Parent=Os12t0511750-00
Chr12	irgsp1_rep	three_prime_UTR	19737837	19737998	.	-	.	Parent=Os12t0511750-00
Chr12	irgsp1_rep	three_prime_UTR	19737235	19737757	.	-	.	Parent=Os12t0511750-00
Chr12	irgsp1_rep	three_prime_UTR	19736933	19737012	.	-	.	Parent=Os12t0511750-00
Chr12	irgsp1_rep	three_prime_UTR	19736762	19736848	.	-	.	Parent=Os12t0511750-00
Chr12	irgsp1_rep	three_prime_UTR	19736299	19736681	.	-	.	Parent=Os12t0511750-00
Chr12	irgsp1_rep	mRNA	19754488	19757913	.	-	.	ID=Os12t0511900-00;Name=Os12t0511900-00;Locus_id=Os12g0511900;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QQ00 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);TENOR=Os12t0511900-00
Chr12	irgsp1_rep	CDS	19754488	19757913	.	-	0	Parent=Os12t0511900-00
Chr12	irgsp1_rep	mRNA	19779508	19786366	.	+	.	ID=Os12t0512000-01;Name=Os12t0512000-01;Locus_id=Os12g0512000;RAP-DB Gene Symbol Synonym(s)=YUCCA5%2C OsYUCCA5%2C OsYUC5%2C YUC5;RAP-DB Gene Name Synonym(s)=YUCCA-LIKE GENE 5%2C (YUCCA-like gene);CGSNL Gene Symbol=YUCCA5;CGSNL Gene Name=YUCCA-LIKE GENE 5;Oryzabase Gene Symbol Synonym(s)=OsYUCCA5%2C OsYUC5%2C YUC5;Oryzabase Gene Name Synonym(s)=(YUCCA-like gene);Note=Flavin monooxygenase-like enzyme %2C Auxin biosynthesis;Transcript_evidence=DP000011_ABA99096_10573;ORF_evidence=Q2QPZ6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Pyridine nucleotide-disulphide oxidoreductase%2C class-II (IPR000103),FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR013027);Manual Curation=July 1%2C 2010;Literature_PMID=17220367;Oryzabase=7442;TENOR=Os12t0512000-01
Chr12	irgsp1_rep	CDS	19779508	19780251	.	+	0	Parent=Os12t0512000-01
Chr12	irgsp1_rep	CDS	19781832	19782080	.	+	0	Parent=Os12t0512000-01
Chr12	irgsp1_rep	CDS	19782386	19782508	.	+	0	Parent=Os12t0512000-01
Chr12	irgsp1_rep	CDS	19786136	19786366	.	+	0	Parent=Os12t0512000-01
Chr12	irgsp1_rep	mRNA	19788367	19791483	.	-	.	ID=Os12t0512100-01;Name=Os12t0512100-01;Locus_id=Os12g0512100;Note=Sugar/inositol transporter domain containing protein.;Transcript_evidence=AK121039 (DDBJ%2C Best hit);ORF_evidence=B6U7I8 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J023051G03;Expression=AK121039;TENOR=Os12t0512100-01;KEGG=Os12t0512100-01
Chr12	irgsp1_rep	five_prime_UTR	19791294	19791483	.	-	.	Parent=Os12t0512100-01
Chr12	irgsp1_rep	CDS	19791140	19791293	.	-	0	Parent=Os12t0512100-01
Chr12	irgsp1_rep	CDS	19790695	19791041	.	-	2	Parent=Os12t0512100-01
Chr12	irgsp1_rep	CDS	19788580	19789620	.	-	0	Parent=Os12t0512100-01
Chr12	irgsp1_rep	three_prime_UTR	19788367	19788579	.	-	.	Parent=Os12t0512100-01
Chr12	irgsp1_rep	mRNA	19788619	19791465	.	+	.	ID=Os12t0512150-00;Name=Os12t0512150-00;Locus_id=Os12g0512150;Note=Hypothetical protein.;Transcript_evidence=AK368745 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0512150-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	19788619	19788730	.	+	.	Parent=Os12t0512150-00
Chr12	irgsp1_rep	CDS	19788731	19789591	.	+	0	Parent=Os12t0512150-00
Chr12	irgsp1_rep	three_prime_UTR	19789592	19789615	.	+	.	Parent=Os12t0512150-00
Chr12	irgsp1_rep	three_prime_UTR	19790690	19791043	.	+	.	Parent=Os12t0512150-00
Chr12	irgsp1_rep	three_prime_UTR	19791145	19791465	.	+	.	Parent=Os12t0512150-00
Chr12	irgsp1_rep	mRNA	19792449	19792663	.	+	.	ID=Os12t0512200-00;Name=Os12t0512200-00;Locus_id=Os12g0512200;Note=Similar to Transposase.;Transcript_evidence=EU975848 (DDBJ);ORF_evidence=E5FNA3 (UniProt);TENOR=Os12t0512200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	19792449	19792453	.	+	.	Parent=Os12t0512200-00
Chr12	irgsp1_rep	CDS	19792454	19792663	.	+	0	Parent=Os12t0512200-00
Chr12	irgsp1_rep	mRNA	19805936	19809656	.	+	.	ID=Os12t0512400-01;Name=Os12t0512400-01;Locus_id=Os12g0512400;Note=Similar to NB-ARC domain containing protein%2C expressed.;Transcript_evidence=AK065758 (DDBJ%2C Best hit);ORF_evidence=Q2QQ00 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013038E14;TENOR=Os12t0512400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	19805936	19806053	.	+	.	Parent=Os12t0512400-01
Chr12	irgsp1_rep	CDS	19806054	19807349	.	+	0	Parent=Os12t0512400-01
Chr12	irgsp1_rep	three_prime_UTR	19807350	19808470	.	+	.	Parent=Os12t0512400-01
Chr12	irgsp1_rep	three_prime_UTR	19808589	19809656	.	+	.	Parent=Os12t0512400-01
Chr12	irgsp1_rep	mRNA	19808586	19809656	.	+	.	ID=Os12t0512400-02;Name=Os12t0512400-02;Locus_id=Os12g0512400;Note=Conserved hypothetical protein.;Transcript_evidence=AK059465 (DDBJ%2C Best hit);ORF_evidence=B8BKR6 (UniProt);NIAS_FLcDNA=001-028-D07;Expression=AK059465;TENOR=Os12t0512400-02;KEGG=Os12t0512400-02
Chr12	irgsp1_rep	five_prime_UTR	19808586	19808718	.	+	.	Parent=Os12t0512400-02
Chr12	irgsp1_rep	five_prime_UTR	19808959	19809294	.	+	.	Parent=Os12t0512400-02
Chr12	irgsp1_rep	CDS	19809295	19809501	.	+	0	Parent=Os12t0512400-02
Chr12	irgsp1_rep	three_prime_UTR	19809502	19809656	.	+	.	Parent=Os12t0512400-02
Chr12	irgsp1_rep	mRNA	19832734	19837063	.	-	.	ID=Os12t0512700-01;Name=Os12t0512700-01;Locus_id=Os12g0512700;CGSNL Gene Symbol=PDR23;CGSNL Gene Name=PLEIOTROPIC DRUG RESISTANCE 23;Oryzabase Gene Symbol Synonym(s)=OsABCG50%2C OsPDR23%2C OsABCG50_1%2C OsABCG50_2;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 50%2C pleiotropic drug resistance 23;Note=ABC transporter-like domain containing protein.;Transcript_evidence=AK103110 (DDBJ%2C Best hit),AK102367 (DDBJ%2C Best hit);ORF_evidence=B9GDE5-2;GO=Cellular Component: membrane (GO:0016020),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887);InterPro=ABC transporter-like (IPR003439),ABC-2 type transporter (IPR013525),Plant PDR ABC transporter associated (IPR013581);NIAS_FLcDNA=J033119C07,J033091K10;Manual Curation=February 18%2C 2020;Oryzabase=12023;TENOR=Os12t0512700-01
Chr12	irgsp1_rep	five_prime_UTR	19836568	19837063	.	-	.	Parent=Os12t0512700-01
Chr12	irgsp1_rep	CDS	19836507	19836567	.	-	0	Parent=Os12t0512700-01
Chr12	irgsp1_rep	CDS	19836327	19836403	.	-	2	Parent=Os12t0512700-01
Chr12	irgsp1_rep	CDS	19836047	19836100	.	-	0	Parent=Os12t0512700-01
Chr12	irgsp1_rep	CDS	19835873	19835963	.	-	0	Parent=Os12t0512700-01
Chr12	irgsp1_rep	CDS	19835466	19835767	.	-	2	Parent=Os12t0512700-01
Chr12	irgsp1_rep	CDS	19835089	19835364	.	-	0	Parent=Os12t0512700-01
Chr12	irgsp1_rep	CDS	19834697	19835010	.	-	0	Parent=Os12t0512700-01
Chr12	irgsp1_rep	CDS	19834444	19834604	.	-	1	Parent=Os12t0512700-01
Chr12	irgsp1_rep	CDS	19834267	19834370	.	-	2	Parent=Os12t0512700-01
Chr12	irgsp1_rep	CDS	19834025	19834178	.	-	0	Parent=Os12t0512700-01
Chr12	irgsp1_rep	CDS	19833457	19833564	.	-	2	Parent=Os12t0512700-01
Chr12	irgsp1_rep	CDS	19833247	19833320	.	-	2	Parent=Os12t0512700-01
Chr12	irgsp1_rep	CDS	19832753	19833142	.	-	0	Parent=Os12t0512700-01
Chr12	irgsp1_rep	three_prime_UTR	19832734	19832752	.	-	.	Parent=Os12t0512700-01
Chr12	irgsp1_rep	mRNA	19828478	19840216	.	-	.	ID=Os12t0512700-02;Name=Os12t0512700-02;Locus_id=Os12g0512700;RAP-DB Gene Symbol Synonym(s)=OsABCG50%2C OsPDR23%2C OsABCG50/PDR23;RAP-DB Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 50%2C pleiotropic drug resistance 23;CGSNL Gene Symbol=PDR23;CGSNL Gene Name=PLEIOTROPIC DRUG RESISTANCE 23;Oryzabase Gene Symbol Synonym(s)=OsABCG50%2C OsPDR23%2C OsABCG50_1%2C OsABCG50_2;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCG subgroup member 50%2C pleiotropic drug resistance 23;Note=Pleiotropic drug resistance ABCG/PDR transporter;Transcript_evidence=Inferred from literature;ORF_evidence=B9GDE5;GO=Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Cellular Component: membrane (GO:0016020);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),ABC transporter-like (IPR003439),ATP-binding cassette transporter%2C PDR-like subfamily G%2C domain 1 (IPR034001),AAA+ ATPase domain (IPR003593),ABC-2 type transporter (IPR013525),Plant PDR ABC transporter associated (IPR013581),ATP-binding cassette transporter%2C PDR-like subfamily G%2C domain 2 (IPR034003);Manual Curation=February 18%2C 2020;Literature_PMID=31419645;Oryzabase=12023
Chr12	irgsp1_rep	five_prime_UTR	19840198	19840216	.	-	.	Parent=Os12t0512700-02
Chr12	irgsp1_rep	CDS	19839911	19840197	.	-	0	Parent=Os12t0512700-02
Chr12	irgsp1_rep	CDS	19839544	19839667	.	-	1	Parent=Os12t0512700-02
Chr12	irgsp1_rep	CDS	19838943	19839028	.	-	0	Parent=Os12t0512700-02
Chr12	irgsp1_rep	CDS	19838754	19838838	.	-	1	Parent=Os12t0512700-02
Chr12	irgsp1_rep	CDS	19836507	19836666	.	-	0	Parent=Os12t0512700-02
Chr12	irgsp1_rep	CDS	19836327	19836403	.	-	2	Parent=Os12t0512700-02
Chr12	irgsp1_rep	CDS	19836047	19836100	.	-	0	Parent=Os12t0512700-02
Chr12	irgsp1_rep	CDS	19835873	19835963	.	-	0	Parent=Os12t0512700-02
Chr12	irgsp1_rep	CDS	19835466	19835767	.	-	2	Parent=Os12t0512700-02
Chr12	irgsp1_rep	CDS	19835089	19835364	.	-	0	Parent=Os12t0512700-02
Chr12	irgsp1_rep	CDS	19834697	19835010	.	-	0	Parent=Os12t0512700-02
Chr12	irgsp1_rep	CDS	19834444	19834604	.	-	1	Parent=Os12t0512700-02
Chr12	irgsp1_rep	CDS	19834267	19834370	.	-	2	Parent=Os12t0512700-02
Chr12	irgsp1_rep	CDS	19834025	19834178	.	-	0	Parent=Os12t0512700-02
Chr12	irgsp1_rep	CDS	19833457	19833564	.	-	2	Parent=Os12t0512700-02
Chr12	irgsp1_rep	CDS	19833247	19833320	.	-	2	Parent=Os12t0512700-02
Chr12	irgsp1_rep	CDS	19832810	19833142	.	-	0	Parent=Os12t0512700-02
Chr12	irgsp1_rep	CDS	19832406	19832696	.	-	0	Parent=Os12t0512700-02
Chr12	irgsp1_rep	CDS	19831290	19831373	.	-	0	Parent=Os12t0512700-02
Chr12	irgsp1_rep	CDS	19830495	19830628	.	-	0	Parent=Os12t0512700-02
Chr12	irgsp1_rep	CDS	19830115	19830342	.	-	1	Parent=Os12t0512700-02
Chr12	irgsp1_rep	CDS	19829814	19829985	.	-	1	Parent=Os12t0512700-02
Chr12	irgsp1_rep	CDS	19829478	19829732	.	-	0	Parent=Os12t0512700-02
Chr12	irgsp1_rep	CDS	19828581	19828847	.	-	0	Parent=Os12t0512700-02
Chr12	irgsp1_rep	three_prime_UTR	19828478	19828580	.	-	.	Parent=Os12t0512700-02
Chr12	irgsp1_rep	mRNA	19848833	19851543	.	-	.	ID=Os12t0512800-01;Name=Os12t0512800-01;Locus_id=Os12g0512800;CGSNL Gene Symbol=CYP71E5;CGSNL Gene Name=CYTOCHROME P450 71E5;Oryzabase Gene Symbol Synonym(s)=OsCYP71E5;Oryzabase Gene Name Synonym(s)=CytoChrome P450 71E5;Note=CytoChrome P450 71E1 (EC 1.14.13.68) (4-hydroxyphenylacetaldehyde oxime monooxygenase).;Transcript_evidence=AK243687 (DDBJ%2C Best hit);ORF_evidence=C0JSA9 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J100090N22;Oryzabase=21828;TENOR=Os12t0512800-01;KEGG=Os12t0512800-01 (EC:1.14.13.68)
Chr12	irgsp1_rep	five_prime_UTR	19851436	19851543	.	-	.	Parent=Os12t0512800-01
Chr12	irgsp1_rep	CDS	19850947	19851435	.	-	0	Parent=Os12t0512800-01
Chr12	irgsp1_rep	CDS	19850178	19850633	.	-	0	Parent=Os12t0512800-01
Chr12	irgsp1_rep	CDS	19849065	19849688	.	-	0	Parent=Os12t0512800-01
Chr12	irgsp1_rep	three_prime_UTR	19848833	19849064	.	-	.	Parent=Os12t0512800-01
Chr12	irgsp1_rep	mRNA	19894198	19894624	.	-	.	ID=Os12t0513800-01;Name=Os12t0513800-01;Locus_id=Os12g0513800;Note=Conserved hypothetical protein.;Transcript_evidence=AK107995 (DDBJ%2C Best hit);ORF_evidence=Q2QPX8 (UniProt);NIAS_FLcDNA=002-135-F12;TENOR=Os12t0513800-01
Chr12	irgsp1_rep	five_prime_UTR	19894623	19894624	.	-	.	Parent=Os12t0513800-01
Chr12	irgsp1_rep	CDS	19894500	19894622	.	-	0	Parent=Os12t0513800-01
Chr12	irgsp1_rep	three_prime_UTR	19894198	19894499	.	-	.	Parent=Os12t0513800-01
Chr12	irgsp1_rep	mRNA	19896368	19898637	.	-	.	ID=Os12t0514000-01;Name=Os12t0514000-01;Locus_id=Os12g0514000;Note=Similar to Sorbitol transporter.;Transcript_evidence=AK099395 (DDBJ%2C Best hit),AK061613 (DDBJ%2C Best hit);ORF_evidence=B6TI70 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: transporter activity (GO:0005215),Molecular Function: transmembrane transporter activity (GO:0022857),Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);InterPro=Sugar/inositol transporter (IPR003663),General substrate transporter (IPR005828),Sugar transporter%2C conserved site (IPR005829),Major facilitator superfamily domain%2C general substrate transporter (IPR016196),Major facilitator superfamily domain (IPR020846);NIAS_FLcDNA=J013000J11,001-033-B07;Expression=AK099395;TENOR=Os12t0514000-01;KEGG=Os12t0514000-01
Chr12	irgsp1_rep	five_prime_UTR	19898608	19898637	.	-	.	Parent=Os12t0514000-01
Chr12	irgsp1_rep	CDS	19898466	19898607	.	-	0	Parent=Os12t0514000-01
Chr12	irgsp1_rep	CDS	19898025	19898371	.	-	2	Parent=Os12t0514000-01
Chr12	irgsp1_rep	CDS	19896727	19897701	.	-	0	Parent=Os12t0514000-01
Chr12	irgsp1_rep	three_prime_UTR	19896368	19896726	.	-	.	Parent=Os12t0514000-01
Chr12	irgsp1_rep	mRNA	19903372	19906420	.	-	.	ID=Os12t0514100-01;Name=Os12t0514100-01;Locus_id=Os12g0514100;Oryzabase Gene Symbol Synonym(s)=Memp;Oryzabase Gene Name Synonym(s)=Membrane protein;Note=Ribosome associated membrane RAMP4 family protein.;Transcript_evidence=AK121189 (DDBJ%2C Best hit);ORF_evidence=B6TJI4 (UniProt);InterPro=Endoplasmic reticulum%2C stress-associated Ramp4 (IPR010580);NIAS_FLcDNA=J023085O07;Oryzabase=23080;Expression=AK121189;TENOR=Os12t0514100-01;KEGG=Os12t0514100-01
Chr12	irgsp1_rep	five_prime_UTR	19906333	19906420	.	-	.	Parent=Os12t0514100-01
Chr12	irgsp1_rep	CDS	19906330	19906332	.	-	0	Parent=Os12t0514100-01
Chr12	irgsp1_rep	CDS	19904717	19904873	.	-	0	Parent=Os12t0514100-01
Chr12	irgsp1_rep	CDS	19903577	19903623	.	-	2	Parent=Os12t0514100-01
Chr12	irgsp1_rep	three_prime_UTR	19903372	19903576	.	-	.	Parent=Os12t0514100-01
Chr12	irgsp1_rep	mRNA	19910640	19911475	.	-	.	ID=Os12t0514300-01;Name=Os12t0514300-01;Locus_id=Os12g0514300;Note=Similar to UPF0497 membrane protein 9.;Transcript_evidence=AK063567 (DDBJ%2C Best hit);ORF_evidence=B8BM55 (UniProt);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup (IPR006459),Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);NIAS_FLcDNA=001-117-F10;Expression=AK063567;TENOR=Os12t0514300-01;KEGG=Os12t0514300-01
Chr12	irgsp1_rep	five_prime_UTR	19911407	19911475	.	-	.	Parent=Os12t0514300-01
Chr12	irgsp1_rep	CDS	19911069	19911406	.	-	0	Parent=Os12t0514300-01
Chr12	irgsp1_rep	CDS	19910800	19910860	.	-	1	Parent=Os12t0514300-01
Chr12	irgsp1_rep	three_prime_UTR	19910640	19910799	.	-	.	Parent=Os12t0514300-01
Chr12	irgsp1_rep	mRNA	19910584	19911471	.	-	.	ID=Os12t0514300-02;Name=Os12t0514300-02;Locus_id=Os12g0514300;Note=Uncharacterised protein family UPF0497%2C trans-membrane plant domain containing protein.;Transcript_evidence=AK062700 (DDBJ%2C Best hit);ORF_evidence=NP_001159013.1 (RefSeq);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup (IPR006459),Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);NIAS_FLcDNA=001-106-B01;Expression=AK062700;TENOR=Os12t0514300-02;KEGG=Os12t0514300-02
Chr12	irgsp1_rep	five_prime_UTR	19911407	19911471	.	-	.	Parent=Os12t0514300-02
Chr12	irgsp1_rep	CDS	19911079	19911406	.	-	0	Parent=Os12t0514300-02
Chr12	irgsp1_rep	CDS	19910800	19910945	.	-	2	Parent=Os12t0514300-02
Chr12	irgsp1_rep	three_prime_UTR	19910584	19910799	.	-	.	Parent=Os12t0514300-02
Chr12	irgsp1_rep	mRNA	19914345	19917888	.	-	.	ID=Os12t0514400-01;Name=Os12t0514400-01;Locus_id=Os12g0514400;Note=Potyvirus VPg interacting protein (Fragment).;Transcript_evidence=AK241392 (DDBJ%2C Best hit);ORF_evidence=NP_001147896.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PHD-type (IPR001965),Protein of unknown function DUF1423%2C plant (IPR004082);NIAS_FLcDNA=J065157H03;TENOR=Os12t0514400-01;KEGG=Os12t0514400-01
Chr12	irgsp1_rep	five_prime_UTR	19917798	19917888	.	-	.	Parent=Os12t0514400-01
Chr12	irgsp1_rep	five_prime_UTR	19917624	19917661	.	-	.	Parent=Os12t0514400-01
Chr12	irgsp1_rep	CDS	19916366	19917623	.	-	0	Parent=Os12t0514400-01
Chr12	irgsp1_rep	CDS	19914695	19915296	.	-	2	Parent=Os12t0514400-01
Chr12	irgsp1_rep	three_prime_UTR	19914345	19914694	.	-	.	Parent=Os12t0514400-01
Chr12	irgsp1_rep	mRNA	19914693	19917497	.	+	.	ID=Os12t0514450-00;Name=Os12t0514450-00;Locus_id=Os12g0514450;Note=Hypothetical protein.;Transcript_evidence=tplb0031m01 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0514450-00
Chr12	irgsp1_rep	five_prime_UTR	19914693	19915306	.	+	.	Parent=Os12t0514450-00
Chr12	irgsp1_rep	five_prime_UTR	19916373	19916627	.	+	.	Parent=Os12t0514450-00
Chr12	irgsp1_rep	CDS	19916628	19917155	.	+	0	Parent=Os12t0514450-00
Chr12	irgsp1_rep	three_prime_UTR	19917156	19917285	.	+	.	Parent=Os12t0514450-00
Chr12	irgsp1_rep	three_prime_UTR	19917346	19917497	.	+	.	Parent=Os12t0514450-00
Chr12	irgsp1_rep	mRNA	19921684	19927728	.	-	.	ID=Os12t0514500-01;Name=Os12t0514500-01;Locus_id=Os12g0514500;Note=Similar to Heat-shock protein precursor.;Transcript_evidence=AK069204 (DDBJ%2C Best hit);ORF_evidence=NP_187434.2 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Biological Process: response to stress (GO:0006950),Molecular Function: ATP binding (GO:0005524),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein Hsp90 (IPR001404),ATPase-like%2C ATP-binding domain (IPR003594),Heat shock protein Hsp90%2C conserved site (IPR019805),Ribosomal protein S5 domain 2-type fold (IPR020568),Heat shock protein Hsp90%2C N-terminal (IPR020575);NIAS_FLcDNA=J023009C12;Expression=AK069204;TENOR=Os12t0514500-01;KEGG=Os12t0514500-01
Chr12	irgsp1_rep	five_prime_UTR	19927595	19927728	.	-	.	Parent=Os12t0514500-01
Chr12	irgsp1_rep	CDS	19927454	19927594	.	-	0	Parent=Os12t0514500-01
Chr12	irgsp1_rep	CDS	19926892	19927095	.	-	0	Parent=Os12t0514500-01
Chr12	irgsp1_rep	CDS	19926727	19926800	.	-	0	Parent=Os12t0514500-01
Chr12	irgsp1_rep	CDS	19926464	19926589	.	-	1	Parent=Os12t0514500-01
Chr12	irgsp1_rep	CDS	19926291	19926384	.	-	1	Parent=Os12t0514500-01
Chr12	irgsp1_rep	CDS	19926106	19926189	.	-	0	Parent=Os12t0514500-01
Chr12	irgsp1_rep	CDS	19925833	19925976	.	-	0	Parent=Os12t0514500-01
Chr12	irgsp1_rep	CDS	19925639	19925752	.	-	0	Parent=Os12t0514500-01
Chr12	irgsp1_rep	CDS	19925504	19925560	.	-	0	Parent=Os12t0514500-01
Chr12	irgsp1_rep	CDS	19925347	19925421	.	-	0	Parent=Os12t0514500-01
Chr12	irgsp1_rep	CDS	19925118	19925222	.	-	0	Parent=Os12t0514500-01
Chr12	irgsp1_rep	CDS	19924311	19924442	.	-	0	Parent=Os12t0514500-01
Chr12	irgsp1_rep	CDS	19924128	19924220	.	-	0	Parent=Os12t0514500-01
Chr12	irgsp1_rep	CDS	19923946	19924023	.	-	0	Parent=Os12t0514500-01
Chr12	irgsp1_rep	CDS	19923602	19923856	.	-	0	Parent=Os12t0514500-01
Chr12	irgsp1_rep	CDS	19923069	19923171	.	-	0	Parent=Os12t0514500-01
Chr12	irgsp1_rep	CDS	19922620	19922794	.	-	2	Parent=Os12t0514500-01
Chr12	irgsp1_rep	CDS	19922435	19922540	.	-	1	Parent=Os12t0514500-01
Chr12	irgsp1_rep	CDS	19922262	19922351	.	-	0	Parent=Os12t0514500-01
Chr12	irgsp1_rep	CDS	19921915	19922100	.	-	0	Parent=Os12t0514500-01
Chr12	irgsp1_rep	three_prime_UTR	19921684	19921914	.	-	.	Parent=Os12t0514500-01
Chr12	irgsp1_rep	mRNA	19921665	19925905	.	-	.	ID=Os12t0514500-02;Name=Os12t0514500-02;Locus_id=Os12g0514500;Note=Similar to ATP binding.;Transcript_evidence=AK067032 (DDBJ%2C Best hit);ORF_evidence=NP_187434.2 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Biological Process: response to stress (GO:0006950),Molecular Function: ATP binding (GO:0005524),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein Hsp90 (IPR001404),ATPase-like%2C ATP-binding domain (IPR003594),Ribosomal protein S5 domain 2-type fold (IPR020568),Heat shock protein Hsp90%2C N-terminal (IPR020575);NIAS_FLcDNA=J013088H23;Expression=AK067032;TENOR=Os12t0514500-02;KEGG=Os12t0514500-02
Chr12	irgsp1_rep	five_prime_UTR	19925905	19925905	.	-	.	Parent=Os12t0514500-02
Chr12	irgsp1_rep	CDS	19925833	19925904	.	-	0	Parent=Os12t0514500-02
Chr12	irgsp1_rep	CDS	19925639	19925752	.	-	0	Parent=Os12t0514500-02
Chr12	irgsp1_rep	CDS	19925504	19925560	.	-	0	Parent=Os12t0514500-02
Chr12	irgsp1_rep	CDS	19925347	19925421	.	-	0	Parent=Os12t0514500-02
Chr12	irgsp1_rep	CDS	19925118	19925222	.	-	0	Parent=Os12t0514500-02
Chr12	irgsp1_rep	CDS	19924311	19924442	.	-	0	Parent=Os12t0514500-02
Chr12	irgsp1_rep	CDS	19924128	19924220	.	-	0	Parent=Os12t0514500-02
Chr12	irgsp1_rep	CDS	19923946	19924023	.	-	0	Parent=Os12t0514500-02
Chr12	irgsp1_rep	CDS	19923602	19923856	.	-	0	Parent=Os12t0514500-02
Chr12	irgsp1_rep	CDS	19923069	19923171	.	-	0	Parent=Os12t0514500-02
Chr12	irgsp1_rep	CDS	19922620	19922794	.	-	2	Parent=Os12t0514500-02
Chr12	irgsp1_rep	CDS	19922435	19922540	.	-	1	Parent=Os12t0514500-02
Chr12	irgsp1_rep	CDS	19922262	19922351	.	-	0	Parent=Os12t0514500-02
Chr12	irgsp1_rep	CDS	19921915	19922100	.	-	0	Parent=Os12t0514500-02
Chr12	irgsp1_rep	three_prime_UTR	19921665	19921914	.	-	.	Parent=Os12t0514500-02
Chr12	irgsp1_rep	mRNA	19921665	19922780	.	-	.	ID=Os12t0514500-03;Name=Os12t0514500-03;Locus_id=Os12g0514500;Note=Similar to ATP binding.;Transcript_evidence=AK059704 (DDBJ%2C Best hit);ORF_evidence=NP_187434.2 (RefSeq);GO=Biological Process: protein folding (GO:0006457),Biological Process: response to stress (GO:0006950),Molecular Function: ATP binding (GO:0005524),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein Hsp90 (IPR001404);NIAS_FLcDNA=001-032-D05;Expression=AK059704;TENOR=Os12t0514500-03;KEGG=Os12t0514500-03
Chr12	irgsp1_rep	CDS	19922620	19922780	.	-	0	Parent=Os12t0514500-03
Chr12	irgsp1_rep	CDS	19922435	19922540	.	-	1	Parent=Os12t0514500-03
Chr12	irgsp1_rep	CDS	19922262	19922351	.	-	0	Parent=Os12t0514500-03
Chr12	irgsp1_rep	CDS	19921915	19922100	.	-	0	Parent=Os12t0514500-03
Chr12	irgsp1_rep	three_prime_UTR	19921665	19921914	.	-	.	Parent=Os12t0514500-03
Chr12	irgsp1_rep	mRNA	19921912	19923794	.	+	.	ID=Os12t0514550-00;Name=Os12t0514550-00;Locus_id=Os12g0514550;Note=Non-protein coding transcript.;Transcript_evidence=BT017162 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0514550-00
Chr12	irgsp1_rep	exon	19921912	19922091	.	+	.	Parent=Os12t0514550-00
Chr12	irgsp1_rep	exon	19922252	19922333	.	+	.	Parent=Os12t0514550-00
Chr12	irgsp1_rep	exon	19922419	19922542	.	+	.	Parent=Os12t0514550-00
Chr12	irgsp1_rep	exon	19922614	19922798	.	+	.	Parent=Os12t0514550-00
Chr12	irgsp1_rep	exon	19923074	19923153	.	+	.	Parent=Os12t0514550-00
Chr12	irgsp1_rep	exon	19923585	19923794	.	+	.	Parent=Os12t0514550-00
Chr12	irgsp1_rep	mRNA	19928513	19932818	.	-	.	ID=Os12t0514600-01;Name=Os12t0514600-01;Locus_id=Os12g0514600;Note=Sterile alpha motif homology domain containing protein.;Transcript_evidence=AK073732 (DDBJ%2C Best hit);ORF_evidence=B3XZN9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Sterile alpha motif domain (IPR001660),Sterile alpha motif%2C type 2 (IPR011510),Sterile alpha motif/pointed domain (IPR013761);NIAS_FLcDNA=J033060I15;Expression=AK073732;TENOR=Os12t0514600-01;KEGG=Os12t0514600-01
Chr12	irgsp1_rep	five_prime_UTR	19932620	19932818	.	-	.	Parent=Os12t0514600-01
Chr12	irgsp1_rep	five_prime_UTR	19932495	19932534	.	-	.	Parent=Os12t0514600-01
Chr12	irgsp1_rep	CDS	19932441	19932494	.	-	0	Parent=Os12t0514600-01
Chr12	irgsp1_rep	CDS	19929986	19930178	.	-	0	Parent=Os12t0514600-01
Chr12	irgsp1_rep	CDS	19928820	19928950	.	-	2	Parent=Os12t0514600-01
Chr12	irgsp1_rep	three_prime_UTR	19928513	19928819	.	-	.	Parent=Os12t0514600-01
Chr12	irgsp1_rep	mRNA	19948105	19953205	.	+	.	ID=Os12t0514900-01;Name=Os12t0514900-01;Locus_id=Os12g0514900;Note=Mitochondrial import inner membrane translocase%2C subunit Tim17/22 family protein.;Transcript_evidence=AK101966 (DDBJ%2C Best hit);ORF_evidence=B6SIC7 (UniProt);InterPro=Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 (IPR003397);NIAS_FLcDNA=J033076H08;Expression=AK101966;TENOR=Os12t0514900-01;KEGG=Os12t0514900-01
Chr12	irgsp1_rep	five_prime_UTR	19948105	19948168	.	+	.	Parent=Os12t0514900-01
Chr12	irgsp1_rep	CDS	19948169	19948454	.	+	0	Parent=Os12t0514900-01
Chr12	irgsp1_rep	CDS	19951640	19951704	.	+	2	Parent=Os12t0514900-01
Chr12	irgsp1_rep	CDS	19951790	19951862	.	+	0	Parent=Os12t0514900-01
Chr12	irgsp1_rep	CDS	19951985	19952038	.	+	2	Parent=Os12t0514900-01
Chr12	irgsp1_rep	CDS	19952752	19952981	.	+	2	Parent=Os12t0514900-01
Chr12	irgsp1_rep	three_prime_UTR	19952982	19953205	.	+	.	Parent=Os12t0514900-01
Chr12	irgsp1_rep	mRNA	19991402	19994410	.	-	.	ID=Os12t0515300-01;Name=Os12t0515300-01;Locus_id=Os12g0515300;RAP-DB Gene Symbol Synonym(s)=OsMYB46;RAP-DB Gene Name Synonym(s)=MYB transcription factor 46;Oryzabase Gene Symbol Synonym(s)=OsMYB46;Oryzabase Gene Name Synonym(s)=MYB transcription factor 46;Note=MYB transcription factor%2C Regulation of secondary wall biosynthesis;Transcript_evidence=JN634084;ORF_evidence=Q2QPW4;GO=Molecular Function: DNA binding (GO:0003677);InterPro=Homeobox-like domain superfamily (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930);Manual Curation=October 20%2C 2020;Literature_PMID=21908441;Oryzabase=15024;TENOR=Os12t0515300-00
Chr12	irgsp1_rep	five_prime_UTR	19994402	19994410	.	-	.	Parent=Os12t0515300-01
Chr12	irgsp1_rep	CDS	19994073	19994401	.	-	0	Parent=Os12t0515300-01
Chr12	irgsp1_rep	CDS	19991426	19992326	.	-	1	Parent=Os12t0515300-01
Chr12	irgsp1_rep	three_prime_UTR	19991402	19991425	.	-	.	Parent=Os12t0515300-01
Chr12	irgsp1_rep	mRNA	20005405	20008855	.	+	.	ID=Os12t0515400-01;Name=Os12t0515400-01;Locus_id=Os12g0515400;Note=Similar to Plastidic 2-oxoglutarate/malate transporter.;Transcript_evidence=AK099798 (DDBJ%2C Best hit);ORF_evidence=Q768R5 (UniProt);GO=Biological Process: sodium ion transport (GO:0006814),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Sodium/sulphate symporter (IPR001898);NIAS_FLcDNA=J013097M20;Expression=AK099798;TENOR=Os12t0515400-01;KEGG=Os12t0515400-01
Chr12	irgsp1_rep	five_prime_UTR	20005405	20005439	.	+	.	Parent=Os12t0515400-01
Chr12	irgsp1_rep	CDS	20005440	20006501	.	+	0	Parent=Os12t0515400-01
Chr12	irgsp1_rep	CDS	20007389	20007610	.	+	0	Parent=Os12t0515400-01
Chr12	irgsp1_rep	CDS	20008216	20008578	.	+	0	Parent=Os12t0515400-01
Chr12	irgsp1_rep	three_prime_UTR	20008579	20008855	.	+	.	Parent=Os12t0515400-01
Chr12	irgsp1_rep	mRNA	20005794	20008791	.	+	.	ID=Os12t0515400-02;Name=Os12t0515400-02;Locus_id=Os12g0515400;Note=Similar to plastidic 2-oxoglutarate/malate transporter.;Transcript_evidence=AK061957 (DDBJ%2C Best hit);ORF_evidence=Q768R5 (UniProt);GO=Biological Process: sodium ion transport (GO:0006814),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Sodium/sulphate symporter (IPR001898);NIAS_FLcDNA=001-042-F09;Expression=AK061957;TENOR=Os12t0515400-02;KEGG=Os12t0515400-02
Chr12	irgsp1_rep	CDS	20005794	20006501	.	+	0	Parent=Os12t0515400-02
Chr12	irgsp1_rep	CDS	20007389	20007610	.	+	0	Parent=Os12t0515400-02
Chr12	irgsp1_rep	CDS	20008216	20008578	.	+	0	Parent=Os12t0515400-02
Chr12	irgsp1_rep	three_prime_UTR	20008579	20008791	.	+	.	Parent=Os12t0515400-02
Chr12	irgsp1_rep	mRNA	20018555	20021302	.	+	.	ID=Os12t0515500-01;Name=Os12t0515500-01;Locus_id=Os12g0515500;CGSNL Gene Symbol=C3H67;CGSNL Gene Name=ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 67;Oryzabase Gene Symbol Synonym(s)=OsC3H67%2C OsTZF4%2C OsCCCH-Zn-7;Oryzabase Gene Name Synonym(s)=Zinc finger CCCH domain-containing protein 67%2C Tandem zinc finger protein 4;Note=Similar to Zn-finger transcription factor.;Transcript_evidence=AK287452 (DDBJ%2C Best hit);ORF_evidence=NP_001147048.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCCH-type (IPR000571),Ankyrin repeat (IPR002110),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J043017N22;Oryzabase=8632;TENOR=Os12t0515500-01;KEGG=Os12t0515500-01
Chr12	irgsp1_rep	five_prime_UTR	20018555	20018832	.	+	.	Parent=Os12t0515500-01
Chr12	irgsp1_rep	CDS	20018833	20020692	.	+	0	Parent=Os12t0515500-01
Chr12	irgsp1_rep	three_prime_UTR	20020693	20021302	.	+	.	Parent=Os12t0515500-01
Chr12	irgsp1_rep	mRNA	20028867	20032871	.	-	.	ID=Os12t0515600-01;Name=Os12t0515600-01;Locus_id=Os12g0515600;CGSNL Gene Symbol=GK1;CGSNL Gene Name=GUANYLATE KINASE 1;Oryzabase Gene Symbol Synonym(s)=cGK%2C OsGK1;Note=Similar to Guanylate kinase (EC 2.7.4.8).;Transcript_evidence=AK071160 (DDBJ%2C Best hit);ORF_evidence=B6TS05 (UniProt);GO=Biological Process: purine nucleotide metabolic process (GO:0006163),Molecular Function: guanylate kinase activity (GO:0004385),Molecular Function: protein binding (GO:0005515);InterPro=Guanylate kinase (IPR008144),Guanylate kinase/L-type calcium channel (IPR008145),Guanylate kinase%2C sub-group (IPR017665),Guanylate kinase%2C conserved site (IPR020590);NIAS_FLcDNA=J023076J23;Oryzabase=9671;Expression=AK071160;TENOR=Os12t0515600-01;KEGG=Os12t0515600-01 (EC:2.7.4.8)
Chr12	irgsp1_rep	five_prime_UTR	20032557	20032871	.	-	.	Parent=Os12t0515600-01
Chr12	irgsp1_rep	five_prime_UTR	20032059	20032095	.	-	.	Parent=Os12t0515600-01
Chr12	irgsp1_rep	CDS	20032056	20032058	.	-	0	Parent=Os12t0515600-01
Chr12	irgsp1_rep	CDS	20031840	20031929	.	-	0	Parent=Os12t0515600-01
Chr12	irgsp1_rep	CDS	20031349	20031422	.	-	0	Parent=Os12t0515600-01
Chr12	irgsp1_rep	CDS	20031134	20031263	.	-	1	Parent=Os12t0515600-01
Chr12	irgsp1_rep	CDS	20030164	20030526	.	-	0	Parent=Os12t0515600-01
Chr12	irgsp1_rep	CDS	20029965	20030086	.	-	0	Parent=Os12t0515600-01
Chr12	irgsp1_rep	CDS	20029721	20029856	.	-	1	Parent=Os12t0515600-01
Chr12	irgsp1_rep	CDS	20029577	20029622	.	-	0	Parent=Os12t0515600-01
Chr12	irgsp1_rep	CDS	20029376	20029484	.	-	2	Parent=Os12t0515600-01
Chr12	irgsp1_rep	CDS	20029193	20029268	.	-	1	Parent=Os12t0515600-01
Chr12	irgsp1_rep	three_prime_UTR	20028867	20029192	.	-	.	Parent=Os12t0515600-01
Chr12	irgsp1_rep	mRNA	20042293	20043043	.	+	.	ID=Os12t0515800-01;Name=Os12t0515800-01;Locus_id=Os12g0515800;RAP-DB Gene Symbol Synonym(s)=DX1;CGSNL Gene Symbol=DX1;Oryzabase Gene Symbol Synonym(s)=OsDX1;Note=Green tissue-specific expression gene;Transcript_evidence=AK120440;ORF_evidence=Q2QPV9;NIAS_FLcDNA=J013098I09;Manual Curation=August 6%2C 2020;Literature_PMID=22388917;Oryzabase=23736;Expression=AK120440;TENOR=Os12t0515800-01;KEGG=Os12t0515800-01
Chr12	irgsp1_rep	five_prime_UTR	20042293	20042370	.	+	.	Parent=Os12t0515800-01
Chr12	irgsp1_rep	CDS	20042371	20042451	.	+	0	Parent=Os12t0515800-01
Chr12	irgsp1_rep	CDS	20042579	20042686	.	+	0	Parent=Os12t0515800-01
Chr12	irgsp1_rep	CDS	20042807	20042854	.	+	0	Parent=Os12t0515800-01
Chr12	irgsp1_rep	three_prime_UTR	20042855	20043043	.	+	.	Parent=Os12t0515800-01
Chr12	irgsp1_rep	mRNA	20045549	20046254	.	+	.	ID=Os12t0516000-00;Name=Os12t0516000-00;Locus_id=Os12g0516000;Note=Conserved hypothetical protein.;Transcript_evidence=CU406057 (DDBJ%2C Best hit);ORF_evidence=NP_001066888.1 (RefSeq);TENOR=Os12t0516000-00;KEGG=Os12t0516000-00
Chr12	irgsp1_rep	five_prime_UTR	20045549	20045631	.	+	.	Parent=Os12t0516000-00
Chr12	irgsp1_rep	CDS	20045632	20045712	.	+	0	Parent=Os12t0516000-00
Chr12	irgsp1_rep	CDS	20045832	20045936	.	+	0	Parent=Os12t0516000-00
Chr12	irgsp1_rep	CDS	20046060	20046107	.	+	0	Parent=Os12t0516000-00
Chr12	irgsp1_rep	three_prime_UTR	20046108	20046254	.	+	.	Parent=Os12t0516000-00
Chr12	irgsp1_rep	mRNA	20058131	20059545	.	-	.	ID=Os12t0516200-00;Name=Os12t0516200-00;Locus_id=Os12g0516200;Note=Conserved hypothetical protein.;Transcript_evidence=CU406685 (DDBJ%2C Best hit);ORF_evidence=NP_001176981.1 (RefSeq);TENOR=Os12t0516200-00;KEGG=Os12t0516200-00
Chr12	irgsp1_rep	five_prime_UTR	20059540	20059545	.	-	.	Parent=Os12t0516200-00
Chr12	irgsp1_rep	CDS	20059459	20059539	.	-	0	Parent=Os12t0516200-00
Chr12	irgsp1_rep	CDS	20058715	20058819	.	-	0	Parent=Os12t0516200-00
Chr12	irgsp1_rep	CDS	20058314	20058361	.	-	0	Parent=Os12t0516200-00
Chr12	irgsp1_rep	three_prime_UTR	20058131	20058313	.	-	.	Parent=Os12t0516200-00
Chr12	irgsp1_rep	mRNA	20061564	20066924	.	-	.	ID=Os12t0516300-01;Name=Os12t0516300-01;Locus_id=Os12g0516300;Note=NB-ARC domain containing protein.;Transcript_evidence=AK066251 (DDBJ%2C Best hit);ORF_evidence=Q2QNU3 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013052B01;Expression=AK066251;TENOR=Os12t0516300-01;KEGG=Os12t0516300-01
Chr12	irgsp1_rep	five_prime_UTR	20066689	20066924	.	-	.	Parent=Os12t0516300-01
Chr12	irgsp1_rep	five_prime_UTR	20066337	20066360	.	-	.	Parent=Os12t0516300-01
Chr12	irgsp1_rep	CDS	20065534	20066336	.	-	0	Parent=Os12t0516300-01
Chr12	irgsp1_rep	CDS	20063128	20065117	.	-	1	Parent=Os12t0516300-01
Chr12	irgsp1_rep	three_prime_UTR	20063123	20063127	.	-	.	Parent=Os12t0516300-01
Chr12	irgsp1_rep	three_prime_UTR	20061564	20062267	.	-	.	Parent=Os12t0516300-01
Chr12	irgsp1_rep	mRNA	20061914	20065902	.	-	.	ID=Os12t0516300-02;Name=Os12t0516300-02;Locus_id=Os12g0516300;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=AK065092 (DDBJ%2C Best hit);ORF_evidence=Q2QNU3 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013001M05;TENOR=Os12t0516300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	20065878	20065902	.	-	.	Parent=Os12t0516300-02
Chr12	irgsp1_rep	CDS	20065534	20065877	.	-	0	Parent=Os12t0516300-02
Chr12	irgsp1_rep	CDS	20063128	20065117	.	-	1	Parent=Os12t0516300-02
Chr12	irgsp1_rep	three_prime_UTR	20063123	20063127	.	-	.	Parent=Os12t0516300-02
Chr12	irgsp1_rep	three_prime_UTR	20061914	20062267	.	-	.	Parent=Os12t0516300-02
Chr12	irgsp1_rep	mRNA	20061914	20063219	.	-	.	ID=Os12t0516300-03;Name=Os12t0516300-03;Locus_id=Os12g0516300;Note=Hypothetical conserved gene.;Transcript_evidence=AK062061 (DDBJ%2C Best hit);ORF_evidence=B9GDP2 (UniProt);NIAS_FLcDNA=001-044-C10;Expression=AK062061;TENOR=Os12t0516300-03;KEGG=Os12t0516300-03
Chr12	irgsp1_rep	five_prime_UTR	20063123	20063219	.	-	.	Parent=Os12t0516300-03
Chr12	irgsp1_rep	five_prime_UTR	20062951	20062966	.	-	.	Parent=Os12t0516300-03
Chr12	irgsp1_rep	CDS	20062925	20062950	.	-	0	Parent=Os12t0516300-03
Chr12	irgsp1_rep	CDS	20061940	20062267	.	-	1	Parent=Os12t0516300-03
Chr12	irgsp1_rep	three_prime_UTR	20061914	20061939	.	-	.	Parent=Os12t0516300-03
Chr12	irgsp1_rep	mRNA	20067178	20067767	.	-	.	ID=Os12t0516350-01;Name=Os12t0516350-01;Locus_id=Os12g0516350;Note=Hypothetical conserved gene.;Transcript_evidence=AK289205 (DDBJ%2C Best hit);ORF_evidence=A3BG48 (UniProt);NIAS_FLcDNA=J100052K23;TENOR=Os12t0516350-01
Chr12	irgsp1_rep	five_prime_UTR	20067767	20067767	.	-	.	Parent=Os12t0516350-01
Chr12	irgsp1_rep	CDS	20067178	20067766	.	-	0	Parent=Os12t0516350-01
Chr12	irgsp1_rep	mRNA	20067213	20067781	.	+	.	ID=Os12t0516400-00;Name=Os12t0516400-00;Locus_id=Os12g0516400;Note=Hypothetical conserved gene.;Transcript_evidence=AK243421 (DDBJ%2C Secondary hit);ORF_evidence=NP_001175028.1 (RefSeq);TENOR=Os12t0516400-00;KEGG=Os12t0516400-00
Chr12	irgsp1_rep	five_prime_UTR	20067213	20067214	.	+	.	Parent=Os12t0516400-00
Chr12	irgsp1_rep	CDS	20067215	20067634	.	+	0	Parent=Os12t0516400-00
Chr12	irgsp1_rep	three_prime_UTR	20067635	20067781	.	+	.	Parent=Os12t0516400-00
Chr12	irgsp1_rep	mRNA	20078008	20079161	.	+	.	ID=Os12t0516700-01;Name=Os12t0516700-01;Locus_id=Os12g0516700;Note=Similar to Splicing factor%2C arginine/serine-rich 12.;Transcript_evidence=AK242441 (DDBJ%2C Best hit);ORF_evidence=B6T8W4 (UniProt);NIAS_FLcDNA=J080094G14;TENOR=Os12t0516700-01;KEGG=Os12t0516700-01
Chr12	irgsp1_rep	five_prime_UTR	20078008	20078377	.	+	.	Parent=Os12t0516700-01
Chr12	irgsp1_rep	CDS	20078378	20078440	.	+	0	Parent=Os12t0516700-01
Chr12	irgsp1_rep	CDS	20078523	20078579	.	+	0	Parent=Os12t0516700-01
Chr12	irgsp1_rep	CDS	20078835	20078927	.	+	0	Parent=Os12t0516700-01
Chr12	irgsp1_rep	three_prime_UTR	20078928	20079161	.	+	.	Parent=Os12t0516700-01
Chr12	irgsp1_rep	mRNA	20080391	20083271	.	-	.	ID=Os12t0516800-00;Name=Os12t0516800-00;Locus_id=Os12g0516800;Oryzabase Gene Symbol Synonym(s)=OsTBL33%2C TBL33;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 33;Note=Hypothetical conserved gene.;Transcript_evidence=AK069357 (DDBJ%2C Secondary hit);ORF_evidence=B9GDF4 (UniProt);Oryzabase=21488;Expression=AK069357;TENOR=Os12t0516800-00;KEGG=Os12t0516800-00
Chr12	irgsp1_rep	five_prime_UTR	20082765	20083271	.	-	.	Parent=Os12t0516800-00
Chr12	irgsp1_rep	five_prime_UTR	20082408	20082744	.	-	.	Parent=Os12t0516800-00
Chr12	irgsp1_rep	CDS	20082251	20082407	.	-	0	Parent=Os12t0516800-00
Chr12	irgsp1_rep	CDS	20081966	20082148	.	-	2	Parent=Os12t0516800-00
Chr12	irgsp1_rep	CDS	20081520	20081715	.	-	2	Parent=Os12t0516800-00
Chr12	irgsp1_rep	CDS	20081393	20081414	.	-	1	Parent=Os12t0516800-00
Chr12	irgsp1_rep	three_prime_UTR	20080391	20081392	.	-	.	Parent=Os12t0516800-00
Chr12	irgsp1_rep	mRNA	20084212	20088112	.	+	.	ID=Os12t0516900-01;Name=Os12t0516900-01;Locus_id=Os12g0516900;Oryzabase Gene Symbol Synonym(s)=OsFbox657%2C Os_F0500;Oryzabase Gene Name Synonym(s)=F-box protein 657;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK101082 (DDBJ%2C Best hit);ORF_evidence=Q2QPJ9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810);NIAS_FLcDNA=J033024E24;Oryzabase=17417;Expression=AK101082;TENOR=Os12t0516900-01;KEGG=Os12t0516900-01
Chr12	irgsp1_rep	five_prime_UTR	20084212	20084419	.	+	.	Parent=Os12t0516900-01
Chr12	irgsp1_rep	five_prime_UTR	20085340	20085395	.	+	.	Parent=Os12t0516900-01
Chr12	irgsp1_rep	CDS	20085396	20086568	.	+	0	Parent=Os12t0516900-01
Chr12	irgsp1_rep	three_prime_UTR	20086569	20087390	.	+	.	Parent=Os12t0516900-01
Chr12	irgsp1_rep	three_prime_UTR	20087603	20088112	.	+	.	Parent=Os12t0516900-01
Chr12	irgsp1_rep	mRNA	20084217	20087066	.	+	.	ID=Os12t0516900-02;Name=Os12t0516900-02;Locus_id=Os12g0516900;Oryzabase Gene Symbol Synonym(s)=OsFbox657%2C Os_F0500;Oryzabase Gene Name Synonym(s)=F-box protein 657;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK121521 (DDBJ%2C Best hit);ORF_evidence=Q2QPJ9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810);NIAS_FLcDNA=J033028J24;Oryzabase=17417;Expression=AK121521;TENOR=Os12t0516900-02;KEGG=Os12t0516900-02
Chr12	irgsp1_rep	five_prime_UTR	20084217	20084419	.	+	.	Parent=Os12t0516900-02
Chr12	irgsp1_rep	five_prime_UTR	20085340	20085395	.	+	.	Parent=Os12t0516900-02
Chr12	irgsp1_rep	CDS	20085396	20086568	.	+	0	Parent=Os12t0516900-02
Chr12	irgsp1_rep	three_prime_UTR	20086569	20087066	.	+	.	Parent=Os12t0516900-02
Chr12	irgsp1_rep	mRNA	20093814	20095262	.	+	.	ID=Os12t0517000-00;Name=Os12t0517000-00;Locus_id=Os12g0517000;Oryzabase Gene Symbol Synonym(s)=Os_F0691;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QPJ9 (UniProt);Oryzabase=17564;TENOR=Os12t0517000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	20093814	20095262	.	+	0	Parent=Os12t0517000-00
Chr12	irgsp1_rep	mRNA	20100297	20103252	.	+	.	ID=Os12t0517100-01;Name=Os12t0517100-01;Locus_id=Os12g0517100;Oryzabase Gene Symbol Synonym(s)=OsFbox658%2C Os_F0589;Oryzabase Gene Name Synonym(s)=F-box protein 658;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK073020 (DDBJ%2C Best hit);ORF_evidence=Q01LI6 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810);NIAS_FLcDNA=J023149K21;Oryzabase=17418;Expression=AK073020;TENOR=Os12t0517100-01;KEGG=Os12t0517100-01
Chr12	irgsp1_rep	five_prime_UTR	20100297	20100482	.	+	.	Parent=Os12t0517100-01
Chr12	irgsp1_rep	CDS	20100483	20100516	.	+	0	Parent=Os12t0517100-01
Chr12	irgsp1_rep	CDS	20101177	20102648	.	+	2	Parent=Os12t0517100-01
Chr12	irgsp1_rep	three_prime_UTR	20102794	20103252	.	+	.	Parent=Os12t0517100-01
Chr12	irgsp1_rep	mRNA	20105748	20107750	.	+	.	ID=Os12t0517200-01;Name=Os12t0517200-01;Locus_id=Os12g0517200;Note=Mitochondrial ribosomal protein S10.;Transcript_evidence=AK111605 (DDBJ%2C Best hit);ORF_evidence=Q9LRH4 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S10 (IPR001848);NIAS_FLcDNA=J013098N07;Expression=AK111605;TENOR=Os12t0517200-01;KEGG=Os12t0517200-01
Chr12	irgsp1_rep	five_prime_UTR	20105748	20107176	.	+	.	Parent=Os12t0517200-01
Chr12	irgsp1_rep	CDS	20107177	20107515	.	+	0	Parent=Os12t0517200-01
Chr12	irgsp1_rep	three_prime_UTR	20107516	20107750	.	+	.	Parent=Os12t0517200-01
Chr12	irgsp1_rep	mRNA	20128513	20139593	.	+	.	ID=Os12t0517800-01;Name=Os12t0517800-01;Locus_id=Os12g0517800;Note=Hypothetical conserved gene.;Transcript_evidence=AK240897 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J065032L17;TENOR=Os12t0517800-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	20128513	20128634	.	+	.	Parent=Os12t0517800-01
Chr12	irgsp1_rep	CDS	20128635	20129046	.	+	0	Parent=Os12t0517800-01
Chr12	irgsp1_rep	CDS	20138514	20138566	.	+	2	Parent=Os12t0517800-01
Chr12	irgsp1_rep	three_prime_UTR	20138567	20139593	.	+	.	Parent=Os12t0517800-01
Chr12	irgsp1_rep	mRNA	20135712	20137733	.	-	.	ID=Os12t0518000-01;Name=Os12t0518000-01;Locus_id=Os12g0518000;Note=Hypothetical conserved gene.;Transcript_evidence=AK071002 (DDBJ%2C Best hit);ORF_evidence=NP_001175451.1 (RefSeq);NIAS_FLcDNA=J023078P05;Expression=AK071002;TENOR=Os12t0518000-01;KEGG=Os12t0518000-01
Chr12	irgsp1_rep	five_prime_UTR	20137230	20137733	.	-	.	Parent=Os12t0518000-01
Chr12	irgsp1_rep	five_prime_UTR	20136349	20136355	.	-	.	Parent=Os12t0518000-01
Chr12	irgsp1_rep	CDS	20136282	20136348	.	-	0	Parent=Os12t0518000-01
Chr12	irgsp1_rep	CDS	20136011	20136136	.	-	2	Parent=Os12t0518000-01
Chr12	irgsp1_rep	CDS	20135901	20135934	.	-	2	Parent=Os12t0518000-01
Chr12	irgsp1_rep	CDS	20135819	20135822	.	-	1	Parent=Os12t0518000-01
Chr12	irgsp1_rep	three_prime_UTR	20135712	20135818	.	-	.	Parent=Os12t0518000-01
Chr12	irgsp1_rep	mRNA	20134692	20137716	.	-	.	ID=Os12t0518000-02;Name=Os12t0518000-02;Locus_id=Os12g0518000;Note=Conserved hypothetical protein.;Transcript_evidence=AK072388 (DDBJ%2C Best hit);ORF_evidence=NP_001175451.1 (RefSeq);NIAS_FLcDNA=J023079B04;TENOR=Os12t0518000-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	20137230	20137716	.	-	.	Parent=Os12t0518000-02
Chr12	irgsp1_rep	five_prime_UTR	20135829	20136355	.	-	.	Parent=Os12t0518000-02
Chr12	irgsp1_rep	CDS	20135730	20135828	.	-	0	Parent=Os12t0518000-02
Chr12	irgsp1_rep	three_prime_UTR	20134692	20135729	.	-	.	Parent=Os12t0518000-02
Chr12	irgsp1_rep	mRNA	20138135	20141194	.	-	.	ID=Os12t0518200-01;Name=Os12t0518200-01;Locus_id=Os12g0518200;Oryzabase Gene Symbol Synonym(s)=FCO9;Oryzabase Gene Name Synonym(s)=Functioning in Cesium Over-transport 9;Note=Similar to Integral membrane protein DUF6 containing protein.;Transcript_evidence=AK070844 (DDBJ%2C Best hit);ORF_evidence=Q2RAV3 (UniProt);NIAS_FLcDNA=J023073J15;Oryzabase=21693;TENOR=Os12t0518200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	20141172	20141194	.	-	.	Parent=Os12t0518200-01
Chr12	irgsp1_rep	CDS	20140950	20141171	.	-	0	Parent=Os12t0518200-01
Chr12	irgsp1_rep	CDS	20140189	20140254	.	-	0	Parent=Os12t0518200-01
Chr12	irgsp1_rep	CDS	20139939	20140055	.	-	0	Parent=Os12t0518200-01
Chr12	irgsp1_rep	CDS	20139402	20139452	.	-	0	Parent=Os12t0518200-01
Chr12	irgsp1_rep	three_prime_UTR	20139209	20139401	.	-	.	Parent=Os12t0518200-01
Chr12	irgsp1_rep	three_prime_UTR	20138926	20139084	.	-	.	Parent=Os12t0518200-01
Chr12	irgsp1_rep	three_prime_UTR	20138663	20138814	.	-	.	Parent=Os12t0518200-01
Chr12	irgsp1_rep	three_prime_UTR	20138135	20138556	.	-	.	Parent=Os12t0518200-01
Chr12	irgsp1_rep	mRNA	20292893	20295400	.	+	.	ID=Os12t0520200-01;Name=Os12t0520200-01;Locus_id=Os12g0520200;Oryzabase Gene Symbol Synonym(s)=OsPAL03%2C OsPAL9%2C TAM1%2C OsTAM1%2C TAM%2C OsTAM;Oryzabase Gene Name Synonym(s)=Phenylalanine ammonia-lyase 03%2C Tyrosine Aminomutase 1;Note=Similar to phenylalanine ammonia-lyase.;Transcript_evidence=AK240729 (DDBJ%2C Best hit);ORF_evidence=Q2QPR0 (UniProt);GO=Biological Process: L-phenylalanine catabolic process (GO:0006559),Biological Process: biosynthetic process (GO:0009058),Cellular Component: cytoplasm (GO:0005737),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ammonia-lyase activity (GO:0016841);InterPro=Phenylalanine/histidine ammonia-lyase (IPR001106),Phenylalanine ammonia-lyase (IPR005922),L-Aspartase-like (IPR008948),Phenylalanine/histidine ammonia-lyases%2C active site (IPR022313),Phenylalanine ammonia-lyase%2C shielding domain (IPR023144),L-Aspartase-like%2C N-terminal (IPR024083);NIAS_FLcDNA=J043030H19;Oryzabase=15679;TENOR=Os12t0520200-01;KEGG=Os12t0520200-01 (EC:4.3.1.24)
Chr12	irgsp1_rep	five_prime_UTR	20292893	20292963	.	+	.	Parent=Os12t0520200-01
Chr12	irgsp1_rep	CDS	20292964	20293334	.	+	0	Parent=Os12t0520200-01
Chr12	irgsp1_rep	CDS	20293491	20295162	.	+	1	Parent=Os12t0520200-01
Chr12	irgsp1_rep	three_prime_UTR	20295163	20295400	.	+	.	Parent=Os12t0520200-01
Chr12	irgsp1_rep	mRNA	20293005	20295208	.	-	.	ID=Os12t0521101-00;Name=Os12t0521101-00;Locus_id=Os12g0521101;Note=Hypothetical protein.;Transcript_evidence=tplb0048a09 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0521101-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	20294497	20295208	.	-	.	Parent=Os12t0521101-00
Chr12	irgsp1_rep	CDS	20293452	20294496	.	-	0	Parent=Os12t0521101-00
Chr12	irgsp1_rep	CDS	20293262	20293326	.	-	2	Parent=Os12t0521101-00
Chr12	irgsp1_rep	three_prime_UTR	20293005	20293261	.	-	.	Parent=Os12t0521101-00
Chr12	irgsp1_rep	mRNA	20304010	20305098	.	+	.	ID=Os12t0521300-00;Name=Os12t0521300-00;Locus_id=Os12g0521300;Note=Similar to HAT family dimerisation domain containing protein.;Transcript_evidence=EU942994 (DDBJ);ORF_evidence=Q2QPQ7 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein dimerization activity (GO:0046983);InterPro=HAT dimerisation (IPR008906),Ribonuclease H-like (IPR012337);TENOR=Os12t0521300-00
Chr12	irgsp1_rep	CDS	20304010	20305098	.	+	0	Parent=Os12t0521300-00
Chr12	irgsp1_rep	mRNA	20468948	20469291	.	+	.	ID=Os12t0522516-00;Name=Os12t0522516-00;Locus_id=Os12g0522516;Note=Similar to ATRL5 (ARABIDOPSIS RAD-LIKE 5)%3B DNA binding / transcription factor.;Transcript_evidence=tplb0003e07 (Wheat FLcDNA);ORF_evidence=NP_564087.2 (RefSeq);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Myb%2C DNA-binding (IPR014778),MYB-like (IPR017877);TENOR=Os12t0522516-00
Chr12	irgsp1_rep	five_prime_UTR	20468948	20469006	.	+	.	Parent=Os12t0522516-00
Chr12	irgsp1_rep	CDS	20469007	20469291	.	+	0	Parent=Os12t0522516-00
Chr12	irgsp1_rep	mRNA	20541795	20543788	.	+	.	ID=Os12t0524201-01;Name=Os12t0524201-01;Locus_id=Os12g0524201;Note=Hypothetical conserved gene.;Transcript_evidence=AK288953 (DDBJ%2C Best hit);ORF_evidence=B6U883 (UniProt);NIAS_FLcDNA=J090083L14;TENOR=Os12t0524201-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	20541795	20541804	.	+	.	Parent=Os12t0524201-01
Chr12	irgsp1_rep	CDS	20541805	20541981	.	+	0	Parent=Os12t0524201-01
Chr12	irgsp1_rep	three_prime_UTR	20541982	20543788	.	+	.	Parent=Os12t0524201-01
Chr12	irgsp1_rep	mRNA	20548245	20548691	.	+	.	ID=Os12t0524750-00;Name=Os12t0524750-00;Locus_id=Os12g0524750;Note=Similar to ribosomal protein S7.;Transcript_evidence=ab initio prediction;ORF_evidence=YP_514635.1 (RefSeq);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Cellular Component: small ribosomal subunit (GO:0015935),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein S7 (IPR000235),Ribosomal protein S7%2C bacterial-type (IPR005717),Ribosomal protein S7 domain (IPR023798);TENOR=Os12t0524750-00
Chr12	irgsp1_rep	CDS	20548245	20548691	.	+	0	Parent=Os12t0524750-00
Chr12	irgsp1_rep	mRNA	20648150	20653426	.	-	.	ID=Os12t0525300-00;Name=Os12t0525300-00;Locus_id=Os12g0525300;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os12t0525300-00
Chr12	irgsp1_rep	CDS	20653349	20653426	.	-	0	Parent=Os12t0525300-00
Chr12	irgsp1_rep	CDS	20652756	20652804	.	-	0	Parent=Os12t0525300-00
Chr12	irgsp1_rep	CDS	20648297	20648404	.	-	2	Parent=Os12t0525300-00
Chr12	irgsp1_rep	CDS	20648150	20648235	.	-	2	Parent=Os12t0525300-00
Chr12	irgsp1_rep	mRNA	20749132	20752135	.	-	.	ID=Os12t0526600-01;Name=Os12t0526600-01;Locus_id=Os12g0526600;Oryzabase Gene Symbol Synonym(s)=OsFbox661%2C Os_F0665;Oryzabase Gene Name Synonym(s)=F-box protein 661;Note=Leucine-rich repeat%2C cysteine-containing subtype domain containing protein.;Transcript_evidence=AK318515 (DDBJ%2C Best hit);ORF_evidence=Q2QPJ9 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810);NIAS_FLcDNA=J033129B06;Oryzabase=17421;TENOR=Os12t0526600-01;KEGG=Os12t0526600-01
Chr12	irgsp1_rep	five_prime_UTR	20751894	20752135	.	-	.	Parent=Os12t0526600-01
Chr12	irgsp1_rep	five_prime_UTR	20750764	20750784	.	-	.	Parent=Os12t0526600-01
Chr12	irgsp1_rep	CDS	20750152	20750763	.	-	0	Parent=Os12t0526600-01
Chr12	irgsp1_rep	three_prime_UTR	20749132	20750151	.	-	.	Parent=Os12t0526600-01
Chr12	irgsp1_rep	mRNA	20781339	20781923	.	+	.	ID=Os12t0527301-00;Name=Os12t0527301-00;Locus_id=Os12g0527301;Note=Hypothetical gene.;Transcript_evidence=CT835552 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os12t0527301-00;KEGG=Os12t0527301-00
Chr12	irgsp1_rep	five_prime_UTR	20781339	20781340	.	+	.	Parent=Os12t0527301-00
Chr12	irgsp1_rep	CDS	20781341	20781628	.	+	0	Parent=Os12t0527301-00
Chr12	irgsp1_rep	three_prime_UTR	20781629	20781923	.	+	.	Parent=Os12t0527301-00
Chr12	irgsp1_rep	mRNA	20788828	20791998	.	+	.	ID=Os12t0527500-01;Name=Os12t0527500-01;Locus_id=Os12g0527500;Oryzabase Gene Symbol Synonym(s)=OsFbox665%2C Os_F0555;Oryzabase Gene Name Synonym(s)=F-box protein 665;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK109836 (DDBJ%2C Best hit);ORF_evidence=Q2QPJ2 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=002-148-D08;Oryzabase=17425;Expression=AK109836;TENOR=Os12t0527500-01;KEGG=Os12t0527500-01
Chr12	irgsp1_rep	five_prime_UTR	20788828	20788865	.	+	.	Parent=Os12t0527500-01
Chr12	irgsp1_rep	CDS	20788866	20790068	.	+	0	Parent=Os12t0527500-01
Chr12	irgsp1_rep	CDS	20790255	20790443	.	+	0	Parent=Os12t0527500-01
Chr12	irgsp1_rep	CDS	20791482	20791850	.	+	0	Parent=Os12t0527500-01
Chr12	irgsp1_rep	three_prime_UTR	20791851	20791998	.	+	.	Parent=Os12t0527500-01
Chr12	irgsp1_rep	mRNA	20802845	20805515	.	+	.	ID=Os12t0527700-01;Name=Os12t0527700-01;Locus_id=Os12g0527700;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK065898 (DDBJ%2C Best hit);ORF_evidence=B8BM83 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Biological Process: recognition of pollen (GO:0048544),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: sugar binding (GO:0005529),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Epidermal growth factor-like%2C type 3 (IPR000742),S-locus glycoprotein (IPR000858),Bulb-type lectin domain (IPR001480),Apple-like (IPR003609),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013049J16;Expression=AK065898;TENOR=Os12t0527700-01;KEGG=Os12t0527700-01
Chr12	irgsp1_rep	five_prime_UTR	20802845	20802865	.	+	.	Parent=Os12t0527700-01
Chr12	irgsp1_rep	CDS	20802866	20805340	.	+	0	Parent=Os12t0527700-01
Chr12	irgsp1_rep	three_prime_UTR	20805341	20805515	.	+	.	Parent=Os12t0527700-01
Chr12	irgsp1_rep	mRNA	20806306	20813363	.	-	.	ID=Os12t0527800-01;Name=Os12t0527800-01;Locus_id=Os12g0527800;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK102102 (DDBJ%2C Best hit);ORF_evidence=B9GDG6 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C PHD-type (IPR001965),Zinc finger%2C FYVE/PHD-type (IPR011011),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C PHD-type%2C conserved site (IPR019786),Zinc finger%2C PHD-finger (IPR019787);NIAS_FLcDNA=J033084A01;Expression=AK102102;TENOR=Os12t0527800-01;KEGG=Os12t0527800-01
Chr12	irgsp1_rep	five_prime_UTR	20813340	20813363	.	-	.	Parent=Os12t0527800-01
Chr12	irgsp1_rep	five_prime_UTR	20811654	20811713	.	-	.	Parent=Os12t0527800-01
Chr12	irgsp1_rep	CDS	20811530	20811653	.	-	0	Parent=Os12t0527800-01
Chr12	irgsp1_rep	CDS	20811401	20811450	.	-	2	Parent=Os12t0527800-01
Chr12	irgsp1_rep	CDS	20810612	20810704	.	-	0	Parent=Os12t0527800-01
Chr12	irgsp1_rep	CDS	20810445	20810533	.	-	0	Parent=Os12t0527800-01
Chr12	irgsp1_rep	CDS	20810261	20810339	.	-	1	Parent=Os12t0527800-01
Chr12	irgsp1_rep	CDS	20809896	20809978	.	-	0	Parent=Os12t0527800-01
Chr12	irgsp1_rep	CDS	20809655	20809733	.	-	1	Parent=Os12t0527800-01
Chr12	irgsp1_rep	CDS	20808852	20809575	.	-	0	Parent=Os12t0527800-01
Chr12	irgsp1_rep	CDS	20807253	20807862	.	-	2	Parent=Os12t0527800-01
Chr12	irgsp1_rep	CDS	20806711	20806846	.	-	1	Parent=Os12t0527800-01
Chr12	irgsp1_rep	three_prime_UTR	20806306	20806710	.	-	.	Parent=Os12t0527800-01
Chr12	irgsp1_rep	mRNA	20806284	20809424	.	-	.	ID=Os12t0527800-02;Name=Os12t0527800-02;Locus_id=Os12g0527800;Note=Hypothetical conserved gene.;Transcript_evidence=AK106543 (DDBJ%2C Best hit);ORF_evidence=B9GDG6 (UniProt);NIAS_FLcDNA=002-108-E12;Expression=AK106543;TENOR=Os12t0527800-02;KEGG=Os12t0527800-02
Chr12	irgsp1_rep	five_prime_UTR	20809423	20809424	.	-	.	Parent=Os12t0527800-02
Chr12	irgsp1_rep	CDS	20808852	20809422	.	-	0	Parent=Os12t0527800-02
Chr12	irgsp1_rep	CDS	20807253	20807862	.	-	2	Parent=Os12t0527800-02
Chr12	irgsp1_rep	CDS	20806711	20806846	.	-	1	Parent=Os12t0527800-02
Chr12	irgsp1_rep	three_prime_UTR	20806284	20806710	.	-	.	Parent=Os12t0527800-02
Chr12	irgsp1_rep	mRNA	20814294	20816272	.	+	.	ID=Os12t0527900-01;Name=Os12t0527900-01;Locus_id=Os12g0527900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK099985 (DDBJ%2C Best hit),AK101013 (DDBJ%2C Best hit);ORF_evidence=NP_001151760.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J013130A06,J023149B10;TENOR=Os12t0527900-01
Chr12	irgsp1_rep	five_prime_UTR	20814294	20814316	.	+	.	Parent=Os12t0527900-01
Chr12	irgsp1_rep	CDS	20814317	20814604	.	+	0	Parent=Os12t0527900-01
Chr12	irgsp1_rep	CDS	20814696	20815952	.	+	0	Parent=Os12t0527900-01
Chr12	irgsp1_rep	three_prime_UTR	20815953	20816272	.	+	.	Parent=Os12t0527900-01
Chr12	irgsp1_rep	mRNA	20816428	20820746	.	-	.	ID=Os12t0528000-01;Name=Os12t0528000-01;Locus_id=Os12g0528000;Note=Conserved hypothetical protein.;Transcript_evidence=AK069942 (DDBJ%2C Best hit);ORF_evidence=Q2QPI6 (UniProt);NIAS_FLcDNA=J023039O07;Expression=AK069942;TENOR=Os12t0528000-01;KEGG=Os12t0528000-01
Chr12	irgsp1_rep	five_prime_UTR	20820627	20820746	.	-	.	Parent=Os12t0528000-01
Chr12	irgsp1_rep	CDS	20820397	20820626	.	-	0	Parent=Os12t0528000-01
Chr12	irgsp1_rep	CDS	20819108	20819999	.	-	1	Parent=Os12t0528000-01
Chr12	irgsp1_rep	CDS	20817892	20818031	.	-	0	Parent=Os12t0528000-01
Chr12	irgsp1_rep	CDS	20817176	20817194	.	-	1	Parent=Os12t0528000-01
Chr12	irgsp1_rep	three_prime_UTR	20816428	20817175	.	-	.	Parent=Os12t0528000-01
Chr12	irgsp1_rep	mRNA	20828974	20831442	.	+	.	ID=Os12t0528100-00;Name=Os12t0528100-00;Locus_id=Os12g0528100;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001066912.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);TENOR=Os12t0528100-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	20828974	20831442	.	+	0	Parent=Os12t0528100-00
Chr12	irgsp1_rep	mRNA	20832908	20837886	.	+	.	ID=Os12t0528300-01;Name=Os12t0528300-01;Locus_id=Os12g0528300;Note=Similar to Adaptor complexes medium subunit family protein%2C expressed.;Transcript_evidence=AK067915 (DDBJ%2C Best hit);ORF_evidence=Q2QPI4 (UniProt);NIAS_FLcDNA=J013122A02;TENOR=Os12t0528300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	20832908	20832996	.	+	.	Parent=Os12t0528300-01
Chr12	irgsp1_rep	CDS	20832997	20833067	.	+	0	Parent=Os12t0528300-01
Chr12	irgsp1_rep	CDS	20833204	20833329	.	+	1	Parent=Os12t0528300-01
Chr12	irgsp1_rep	CDS	20833667	20833979	.	+	1	Parent=Os12t0528300-01
Chr12	irgsp1_rep	three_prime_UTR	20833980	20833980	.	+	.	Parent=Os12t0528300-01
Chr12	irgsp1_rep	three_prime_UTR	20834130	20834413	.	+	.	Parent=Os12t0528300-01
Chr12	irgsp1_rep	three_prime_UTR	20834523	20835418	.	+	.	Parent=Os12t0528300-01
Chr12	irgsp1_rep	three_prime_UTR	20835699	20836453	.	+	.	Parent=Os12t0528300-01
Chr12	irgsp1_rep	three_prime_UTR	20837159	20837886	.	+	.	Parent=Os12t0528300-01
Chr12	irgsp1_rep	mRNA	20838521	20843235	.	+	.	ID=Os12t0528400-01;Name=Os12t0528400-01;Locus_id=Os12g0528400;CGSNL Gene Symbol=GS3;CGSNL Gene Name=GLUTATHIONE SYNTHETASE 3;Oryzabase Gene Symbol Synonym(s)=OsGS3;Oryzabase Gene Name Synonym(s)=glutathione synthetase 3;Note=Similar to Glutathione synthetase.;Transcript_evidence=AK103004 (DDBJ%2C Best hit);ORF_evidence=Q2PZ33 (UniProt);GO=Biological Process: glutathione biosynthetic process (GO:0006750),Molecular Function: glutathione synthase activity (GO:0004363),Molecular Function: ATP binding (GO:0005524),Molecular Function: ligase activity (GO:0016874);InterPro=Glutathione synthase%2C eukaryotic (IPR005615),Glutathione synthase%2C alpha-helical%2C eukaryotic (IPR014042);NIAS_FLcDNA=J033116H11;Oryzabase=22998;Expression=AK103004;TENOR=Os12t0528400-01;KEGG=Os12t0528400-01 (EC:6.3.2.3)
Chr12	irgsp1_rep	five_prime_UTR	20838521	20839307	.	+	.	Parent=Os12t0528400-01
Chr12	irgsp1_rep	CDS	20839308	20839540	.	+	0	Parent=Os12t0528400-01
Chr12	irgsp1_rep	CDS	20839710	20839785	.	+	1	Parent=Os12t0528400-01
Chr12	irgsp1_rep	CDS	20839877	20840011	.	+	0	Parent=Os12t0528400-01
Chr12	irgsp1_rep	three_prime_UTR	20840012	20840805	.	+	.	Parent=Os12t0528400-01
Chr12	irgsp1_rep	three_prime_UTR	20840893	20841396	.	+	.	Parent=Os12t0528400-01
Chr12	irgsp1_rep	three_prime_UTR	20841516	20841585	.	+	.	Parent=Os12t0528400-01
Chr12	irgsp1_rep	three_prime_UTR	20841853	20841974	.	+	.	Parent=Os12t0528400-01
Chr12	irgsp1_rep	three_prime_UTR	20842154	20842293	.	+	.	Parent=Os12t0528400-01
Chr12	irgsp1_rep	three_prime_UTR	20842524	20842716	.	+	.	Parent=Os12t0528400-01
Chr12	irgsp1_rep	three_prime_UTR	20842805	20843235	.	+	.	Parent=Os12t0528400-01
Chr12	irgsp1_rep	mRNA	20842616	20843235	.	+	.	ID=Os12t0528400-02;Name=Os12t0528400-02;Locus_id=Os12g0528400;CGSNL Gene Symbol=GS3;CGSNL Gene Name=GLUTATHIONE SYNTHETASE 3;Oryzabase Gene Symbol Synonym(s)=OsGS3;Oryzabase Gene Name Synonym(s)=glutathione synthetase 3;Note=Similar to Glutathione synthetase (Fragment).;Transcript_evidence=AK058922 (DDBJ%2C Best hit);ORF_evidence=Q2PZ33 (UniProt);GO=Biological Process: glutathione biosynthetic process (GO:0006750),Molecular Function: glutathione synthase activity (GO:0004363),Molecular Function: ATP binding (GO:0005524),Molecular Function: ligase activity (GO:0016874);InterPro=Glutathione synthase%2C eukaryotic (IPR005615),ATP-grasp fold%2C subdomain 2 (IPR013816);NIAS_FLcDNA=001-009-B11;Oryzabase=22998;Expression=AK058922;TENOR=Os12t0528400-02;KEGG=Os12t0528400-02 (EC:6.3.2.3)
Chr12	irgsp1_rep	CDS	20842616	20842716	.	+	0	Parent=Os12t0528400-02
Chr12	irgsp1_rep	CDS	20842805	20842940	.	+	1	Parent=Os12t0528400-02
Chr12	irgsp1_rep	three_prime_UTR	20842941	20843235	.	+	.	Parent=Os12t0528400-02
Chr12	irgsp1_rep	mRNA	20838481	20843212	.	+	.	ID=Os12t0528400-03;Name=Os12t0528400-03;Locus_id=Os12g0528400;RAP-DB Gene Symbol Synonym(s)=OsGS3;RAP-DB Gene Name Synonym(s)=glutathione synthetase 3;CGSNL Gene Symbol=GS3;CGSNL Gene Name=GLUTATHIONE SYNTHETASE 3;Oryzabase Gene Symbol Synonym(s)=OsGS3;Oryzabase Gene Name Synonym(s)=glutathione synthetase 3;Note=Glutathione synthetase;Transcript_evidence=LC385880;ORF_evidence=A0A3G9EDT2;GO=Biological Process: glutathione biosynthetic process (GO:0006750),Molecular Function: glutathione synthase activity (GO:0004363),Molecular Function: ATP binding (GO:0005524),Molecular Function: ligase activity (GO:0016874);InterPro=Glutathione synthase%2C N-terminal%2C eukaryotic (IPR014049),Glutathione synthase%2C alpha-helical (IPR014042),Glutathione synthase%2C substrate-binding domain superfamily (IPR037013),Pre-ATP-grasp domain superfamily (IPR016185),Glutathione synthase%2C C-terminal%2C eukaryotic (IPR014709),Glutathione synthase (IPR005615),Glutathione synthase%2C substrate-binding domain (IPR004887);Manual Curation=August 8%2C 2019;Literature_PMID=31245762;Oryzabase=22998
Chr12	irgsp1_rep	five_prime_UTR	20838481	20838571	.	+	.	Parent=Os12t0528400-03
Chr12	irgsp1_rep	CDS	20838572	20838688	.	+	0	Parent=Os12t0528400-03
Chr12	irgsp1_rep	CDS	20839371	20839540	.	+	0	Parent=Os12t0528400-03
Chr12	irgsp1_rep	CDS	20839710	20839785	.	+	1	Parent=Os12t0528400-03
Chr12	irgsp1_rep	CDS	20839877	20840007	.	+	0	Parent=Os12t0528400-03
Chr12	irgsp1_rep	CDS	20840683	20840805	.	+	1	Parent=Os12t0528400-03
Chr12	irgsp1_rep	CDS	20840893	20840973	.	+	1	Parent=Os12t0528400-03
Chr12	irgsp1_rep	CDS	20841316	20841396	.	+	1	Parent=Os12t0528400-03
Chr12	irgsp1_rep	CDS	20841516	20841585	.	+	1	Parent=Os12t0528400-03
Chr12	irgsp1_rep	CDS	20841853	20841974	.	+	0	Parent=Os12t0528400-03
Chr12	irgsp1_rep	CDS	20842154	20842293	.	+	1	Parent=Os12t0528400-03
Chr12	irgsp1_rep	CDS	20842524	20842716	.	+	2	Parent=Os12t0528400-03
Chr12	irgsp1_rep	CDS	20842805	20842940	.	+	1	Parent=Os12t0528400-03
Chr12	irgsp1_rep	three_prime_UTR	20842941	20843212	.	+	.	Parent=Os12t0528400-03
Chr12	irgsp1_rep	mRNA	20844119	20846664	.	-	.	ID=Os12t0528801-01;Name=Os12t0528801-01;Locus_id=Os12g0528801;Note=Hypothetical gene.;Transcript_evidence=AK287515 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J053036E13;TENOR=Os12t0528801-01;KEGG=Os12t0528801-01
Chr12	irgsp1_rep	CDS	20846601	20846664	.	-	0	Parent=Os12t0528801-01
Chr12	irgsp1_rep	CDS	20844196	20844365	.	-	2	Parent=Os12t0528801-01
Chr12	irgsp1_rep	three_prime_UTR	20844119	20844195	.	-	.	Parent=Os12t0528801-01
Chr12	irgsp1_rep	mRNA	20861070	20862990	.	+	.	ID=Os12t0529200-01;Name=Os12t0529200-01;Locus_id=Os12g0529200;Note=Protein of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK069805 (DDBJ%2C Best hit);ORF_evidence=B8BM90 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=J023030L10;Expression=AK069805;TENOR=Os12t0529200-01;KEGG=Os12t0529200-01
Chr12	irgsp1_rep	five_prime_UTR	20861070	20861205	.	+	.	Parent=Os12t0529200-01
Chr12	irgsp1_rep	CDS	20861206	20862524	.	+	0	Parent=Os12t0529200-01
Chr12	irgsp1_rep	CDS	20862617	20862725	.	+	1	Parent=Os12t0529200-01
Chr12	irgsp1_rep	three_prime_UTR	20862726	20862990	.	+	.	Parent=Os12t0529200-01
Chr12	irgsp1_rep	mRNA	20868401	20868954	.	+	.	ID=Os12t0529300-00;Name=Os12t0529300-00;Locus_id=Os12g0529300;Note=Similar to Auxin-binding protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QPH4 (UniProt);GO=Cellular Component: endoplasmic reticulum lumen (GO:0005788),Molecular Function: receptor activity (GO:0004872);InterPro=Auxin-binding protein (IPR000526),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710);TENOR=Os12t0529300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	20868401	20868481	.	+	0	Parent=Os12t0529300-00
Chr12	irgsp1_rep	CDS	20868568	20868635	.	+	0	Parent=Os12t0529300-00
Chr12	irgsp1_rep	CDS	20868852	20868954	.	+	1	Parent=Os12t0529300-00
Chr12	irgsp1_rep	mRNA	20869444	20871424	.	+	.	ID=Os12t0529400-01;Name=Os12t0529400-01;Locus_id=Os12g0529400;Note=Similar to Auxin-binding protein 4 precursor (ABP).;Transcript_evidence=AK111608 (DDBJ%2C Best hit);ORF_evidence=Q56B53 (UniProt);GO=Cellular Component: endoplasmic reticulum lumen (GO:0005788),Molecular Function: receptor activity (GO:0004872);InterPro=Auxin-binding protein (IPR000526),Cupin%2C RmlC-type (IPR011051),RmlC-like jelly roll fold (IPR014710);NIAS_FLcDNA=J013102J06;Expression=AK111608;TENOR=Os12t0529400-01;KEGG=Os12t0529400-01
Chr12	irgsp1_rep	five_prime_UTR	20869444	20869457	.	+	.	Parent=Os12t0529400-01
Chr12	irgsp1_rep	CDS	20869458	20869599	.	+	0	Parent=Os12t0529400-01
Chr12	irgsp1_rep	CDS	20869883	20869989	.	+	2	Parent=Os12t0529400-01
Chr12	irgsp1_rep	CDS	20870197	20870397	.	+	0	Parent=Os12t0529400-01
Chr12	irgsp1_rep	CDS	20870578	20870645	.	+	0	Parent=Os12t0529400-01
Chr12	irgsp1_rep	CDS	20871063	20871165	.	+	1	Parent=Os12t0529400-01
Chr12	irgsp1_rep	three_prime_UTR	20871166	20871424	.	+	.	Parent=Os12t0529400-01
Chr12	irgsp1_rep	mRNA	20874049	20875100	.	+	.	ID=Os12t0529500-00;Name=Os12t0529500-00;Locus_id=Os12g0529500;Note=Hypothetical conserved gene.;Transcript_evidence=tplb0021g05 (Wheat FLcDNA);ORF_evidence=A2WLQ6 (UniProt);InterPro=Polyketide cyclase/dehydrase (IPR019587),START-like domain (IPR023393);TENOR=Os12t0529500-00;KEGG=Os12t0529500-00
Chr12	irgsp1_rep	CDS	20874049	20874340	.	+	0	Parent=Os12t0529500-00
Chr12	irgsp1_rep	CDS	20874727	20875100	.	+	2	Parent=Os12t0529500-00
Chr12	irgsp1_rep	mRNA	20884719	20886404	.	-	.	ID=Os12t0529800-00;Name=Os12t0529800-00;Locus_id=Os12g0529800;Note=Hypothetical protein.;Transcript_evidence=tplb0042g13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0529800-00
Chr12	irgsp1_rep	five_prime_UTR	20885762	20886404	.	-	.	Parent=Os12t0529800-00
Chr12	irgsp1_rep	CDS	20884719	20885761	.	-	0	Parent=Os12t0529800-00
Chr12	irgsp1_rep	mRNA	20885447	20886410	.	+	.	ID=Os12t0529900-01;Name=Os12t0529900-01;Locus_id=Os12g0529900;Note=Conserved hypothetical protein.;Transcript_evidence=AK059455 (DDBJ%2C Best hit);ORF_evidence=Q2QPH0 (UniProt);NIAS_FLcDNA=001-028-C02;Expression=AK059455;TENOR=Os12t0529900-01;KEGG=Os12t0529900-01
Chr12	irgsp1_rep	five_prime_UTR	20885447	20885447	.	+	.	Parent=Os12t0529900-01
Chr12	irgsp1_rep	CDS	20885448	20886257	.	+	0	Parent=Os12t0529900-01
Chr12	irgsp1_rep	three_prime_UTR	20886258	20886410	.	+	.	Parent=Os12t0529900-01
Chr12	irgsp1_rep	mRNA	20888278	20889121	.	-	.	ID=Os12t0530000-01;Name=Os12t0530000-01;Locus_id=Os12g0530000;Oryzabase Gene Name Synonym(s)=Histone H2A IV;Note=Similar to Histone H2A.;Transcript_evidence=AK121752 (DDBJ%2C Best hit);ORF_evidence=C5YP98 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Histone H2A (IPR002119),Histone core (IPR007125),Histone-fold (IPR009072);NIAS_FLcDNA=J033087P07;Oryzabase=17720;Expression=AK121752;TENOR=Os12t0530000-01;KEGG=Os12t0530000-01
Chr12	irgsp1_rep	five_prime_UTR	20889013	20889121	.	-	.	Parent=Os12t0530000-01
Chr12	irgsp1_rep	CDS	20888818	20889012	.	-	0	Parent=Os12t0530000-01
Chr12	irgsp1_rep	CDS	20888498	20888719	.	-	0	Parent=Os12t0530000-01
Chr12	irgsp1_rep	three_prime_UTR	20888278	20888497	.	-	.	Parent=Os12t0530000-01
Chr12	irgsp1_rep	mRNA	20890100	20899533	.	-	.	ID=Os12t0530100-01;Name=Os12t0530100-01;Locus_id=Os12g0530100;Oryzabase Gene Symbol Synonym(s)=prx138;Oryzabase Gene Name Synonym(s)=class III peroxidase 138;Note=Similar to Peroxidase 24 precursor (EC 1.11.1.7) (Atperox P24) (ATP47).;Transcript_evidence=AK109551 (DDBJ%2C Best hit);ORF_evidence=Q5U1F5 (UniProt);GO=Biological Process: response to oxidative stress (GO:0006979),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: heme binding (GO:0020037);InterPro=Plant peroxidase (IPR000823),Haem peroxidase%2C plant/fungal/bacterial (IPR002016),Haem peroxidase (IPR010255),Peroxidases heam-ligand binding site (IPR019793);NIAS_FLcDNA=002-124-A03;Oryzabase=14652;Expression=AK109551;TENOR=Os12t0530100-01;KEGG=Os12t0530100-01 (EC:1.11.1.7)
Chr12	irgsp1_rep	five_prime_UTR	20899447	20899533	.	-	.	Parent=Os12t0530100-01
Chr12	irgsp1_rep	CDS	20899189	20899446	.	-	0	Parent=Os12t0530100-01
Chr12	irgsp1_rep	CDS	20898901	20899104	.	-	0	Parent=Os12t0530100-01
Chr12	irgsp1_rep	CDS	20898655	20898820	.	-	0	Parent=Os12t0530100-01
Chr12	irgsp1_rep	CDS	20890292	20890707	.	-	2	Parent=Os12t0530100-01
Chr12	irgsp1_rep	three_prime_UTR	20890100	20890291	.	-	.	Parent=Os12t0530100-01
Chr12	irgsp1_rep	mRNA	20897723	20898421	.	-	.	ID=Os12t0530200-01;Name=Os12t0530200-01;Locus_id=Os12g0530200;Note=Non-protein coding transcript.;Transcript_evidence=AK062348 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-101-F11;TENOR=Os12t0530200-01
Chr12	irgsp1_rep	exon	20897723	20898421	.	-	.	Parent=Os12t0530200-01
Chr12	irgsp1_rep	mRNA	20903084	20903625	.	-	.	ID=Os12t0530300-01;Name=Os12t0530300-01;Locus_id=Os12g0530300;Note=Hypothetical conserved gene.;Transcript_evidence=AK107694 (DDBJ%2C Best hit);ORF_evidence=A2ZL73 (UniProt);NIAS_FLcDNA=002-132-C03;Expression=AK107694;TENOR=Os12t0530300-01;KEGG=Os12t0530300-01
Chr12	irgsp1_rep	five_prime_UTR	20903624	20903625	.	-	.	Parent=Os12t0530300-01
Chr12	irgsp1_rep	CDS	20903261	20903623	.	-	0	Parent=Os12t0530300-01
Chr12	irgsp1_rep	three_prime_UTR	20903084	20903260	.	-	.	Parent=Os12t0530300-01
Chr12	irgsp1_rep	mRNA	21136245	21138179	.	+	.	ID=Os12t0532500-01;Name=Os12t0532500-01;Locus_id=Os12g0532500;Note=Conserved hypothetical protein.;Transcript_evidence=AK241372 (DDBJ%2C Best hit);ORF_evidence=NP_001176990.1 (RefSeq);NIAS_FLcDNA=J065154J02;TENOR=Os12t0532500-01;KEGG=Os12t0532500-01
Chr12	irgsp1_rep	five_prime_UTR	21136245	21136335	.	+	.	Parent=Os12t0532500-01
Chr12	irgsp1_rep	CDS	21136336	21136809	.	+	0	Parent=Os12t0532500-01
Chr12	irgsp1_rep	three_prime_UTR	21136810	21136979	.	+	.	Parent=Os12t0532500-01
Chr12	irgsp1_rep	three_prime_UTR	21137163	21137215	.	+	.	Parent=Os12t0532500-01
Chr12	irgsp1_rep	three_prime_UTR	21137691	21137740	.	+	.	Parent=Os12t0532500-01
Chr12	irgsp1_rep	three_prime_UTR	21137848	21138179	.	+	.	Parent=Os12t0532500-01
Chr12	irgsp1_rep	mRNA	21139042	21141043	.	+	.	ID=Os12t0532600-01;Name=Os12t0532600-01;Locus_id=Os12g0532600;Note=Conserved hypothetical protein.;Transcript_evidence=AK066369 (DDBJ%2C Best hit);ORF_evidence=Q33A47 (UniProt);NIAS_FLcDNA=J013059K17;TENOR=Os12t0532600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	21139042	21139640	.	+	.	Parent=Os12t0532600-01
Chr12	irgsp1_rep	five_prime_UTR	21140592	21140613	.	+	.	Parent=Os12t0532600-01
Chr12	irgsp1_rep	CDS	21140614	21140772	.	+	0	Parent=Os12t0532600-01
Chr12	irgsp1_rep	three_prime_UTR	21140773	21141043	.	+	.	Parent=Os12t0532600-01
Chr12	irgsp1_rep	mRNA	21207193	21210211	.	+	.	ID=Os12t0533400-00;Name=Os12t0533400-00;Locus_id=Os12g0533400;Note=Similar to Rac GTPase activating protein 1.;Transcript_evidence=AY364310 (DDBJ%2C Best hit);ORF_evidence=B6TXT7 (UniProt);GO=Biological Process: signal transduction (GO:0007165),Cellular Component: intracellular (GO:0005622),Molecular Function: protein binding (GO:0005515);InterPro=PAK-box/P21-Rho-binding (IPR000095),Rho GTPase-activating protein domain (IPR000198),Rho GTPase activation protein (IPR008936);Expression=AY364310;TENOR=Os12t0533400-00;KEGG=Os12t0533400-00
Chr12	irgsp1_rep	CDS	21207193	21207317	.	+	0	Parent=Os12t0533400-00
Chr12	irgsp1_rep	CDS	21208626	21208746	.	+	1	Parent=Os12t0533400-00
Chr12	irgsp1_rep	CDS	21208844	21208963	.	+	0	Parent=Os12t0533400-00
Chr12	irgsp1_rep	CDS	21209131	21209361	.	+	0	Parent=Os12t0533400-00
Chr12	irgsp1_rep	CDS	21209481	21209978	.	+	0	Parent=Os12t0533400-00
Chr12	irgsp1_rep	three_prime_UTR	21209979	21210211	.	+	.	Parent=Os12t0533400-00
Chr12	irgsp1_rep	mRNA	21210477	21214801	.	-	.	ID=Os12t0533500-01;Name=Os12t0533500-01;Locus_id=Os12g0533500;RAP-DB Gene Symbol Synonym(s)=OsVIL1;RAP-DB Gene Name Synonym(s)=VERNALIZATION INSENSITIVE 3-LIKE 1;Oryzabase Gene Symbol Synonym(s)=OsVIL1%2C VIL1%2C OsVIL2;Oryzabase Gene Name Synonym(s)=VIN3-LIKE 1%2C VERNALIZATION INSENSITIVE 3-LIKE 1%2C VERNALIZATION INSENSITIVE 3-LIKE 2;Note=Protein containing PHD domain%2C FNIII domain and VID domain%2C Positive regulator of flowering;Transcript_evidence=AK068646;ORF_evidence=Q2QPD5;GO=Molecular Function: protein binding (GO:0005515);InterPro=Immunoglobulin-like fold (IPR013783),Fibronectin%2C type III (IPR003961);NIAS_FLcDNA=J013158L10;Manual Curation=October 12%2C 2017;Literature_PMID=26795142,22973062;Oryzabase=11844;TENOR=Os12t0533500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	21214625	21214801	.	-	.	Parent=Os12t0533500-01
Chr12	irgsp1_rep	CDS	21214573	21214624	.	-	0	Parent=Os12t0533500-01
Chr12	irgsp1_rep	CDS	21212666	21213311	.	-	2	Parent=Os12t0533500-01
Chr12	irgsp1_rep	CDS	21211916	21212226	.	-	1	Parent=Os12t0533500-01
Chr12	irgsp1_rep	CDS	21210704	21211818	.	-	2	Parent=Os12t0533500-01
Chr12	irgsp1_rep	three_prime_UTR	21210477	21210703	.	-	.	Parent=Os12t0533500-01
Chr12	irgsp1_rep	mRNA	21210708	21212973	.	+	.	ID=Os12t0533550-00;Name=Os12t0533550-00;Locus_id=Os12g0533550;Note=Non-protein coding transcript.;Transcript_evidence=tplb0048h04 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os12t0533550-00
Chr12	irgsp1_rep	exon	21210708	21211858	.	+	.	Parent=Os12t0533550-00
Chr12	irgsp1_rep	exon	21211953	21212228	.	+	.	Parent=Os12t0533550-00
Chr12	irgsp1_rep	exon	21212669	21212973	.	+	.	Parent=Os12t0533550-00
Chr12	irgsp1_rep	mRNA	21216320	21218986	.	-	.	ID=Os12t0533600-01;Name=Os12t0533600-01;Locus_id=Os12g0533600;Note=Hypothetical conserved gene.;Transcript_evidence=AK241686 (DDBJ%2C Best hit);ORF_evidence=B9GDH8 (UniProt);NIAS_FLcDNA=J065194D13;TENOR=Os12t0533600-01;KEGG=Os12t0533600-01
Chr12	irgsp1_rep	five_prime_UTR	21218882	21218986	.	-	.	Parent=Os12t0533600-01
Chr12	irgsp1_rep	CDS	21218772	21218881	.	-	0	Parent=Os12t0533600-01
Chr12	irgsp1_rep	CDS	21218201	21218352	.	-	1	Parent=Os12t0533600-01
Chr12	irgsp1_rep	CDS	21217869	21217978	.	-	2	Parent=Os12t0533600-01
Chr12	irgsp1_rep	CDS	21217512	21217597	.	-	0	Parent=Os12t0533600-01
Chr12	irgsp1_rep	CDS	21216918	21217028	.	-	1	Parent=Os12t0533600-01
Chr12	irgsp1_rep	CDS	21216684	21216819	.	-	1	Parent=Os12t0533600-01
Chr12	irgsp1_rep	three_prime_UTR	21216320	21216683	.	-	.	Parent=Os12t0533600-01
Chr12	irgsp1_rep	mRNA	21216698	21217646	.	+	.	ID=Os12t0533650-00;Name=Os12t0533650-00;Locus_id=Os12g0533650;Note=Non-protein coding transcript.;Transcript_evidence=BT019135 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0533650-00
Chr12	irgsp1_rep	exon	21216698	21216813	.	+	.	Parent=Os12t0533650-00
Chr12	irgsp1_rep	exon	21216915	21217019	.	+	.	Parent=Os12t0533650-00
Chr12	irgsp1_rep	exon	21217505	21217646	.	+	.	Parent=Os12t0533650-00
Chr12	irgsp1_rep	mRNA	21220798	21225582	.	+	.	ID=Os12t0533700-01;Name=Os12t0533700-01;Locus_id=Os12g0533700;Note=Phenylalanyl-tRNA synthetase%2C class IIc%2C mitochondrial domain containing protein.;Transcript_evidence=AK059125 (DDBJ%2C Best hit),AK099502 (DDBJ%2C Best hit);ORF_evidence=B6TK31 (UniProt);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: phenylalanyl-tRNA aminoacylation (GO:0006432),Biological Process: tRNA processing (GO:0008033),Biological Process: tRNA aminoacylation (GO:0043039),Cellular Component: cytoplasm (GO:0005737),Molecular Function: tRNA binding (GO:0000049),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: magnesium ion binding (GO:0000287),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: phenylalanine-tRNA ligase activity (GO:0004826),Molecular Function: ATP binding (GO:0005524);InterPro=Phenylalanyl-tRNA synthetase (IPR002319),Phenylalanyl-tRNA synthetase%2C class IIc%2C mitochondrial (IPR004530),Phenylalanyl-tRNA synthetase%2C beta subunit%2C ferrodoxin-fold anticodon-binding (IPR005121),Aminoacyl-tRNA synthetase%2C class II (IPR006195);NIAS_FLcDNA=001-022-F10,J013028J05;TENOR=Os12t0533700-01
Chr12	irgsp1_rep	five_prime_UTR	21220798	21220803	.	+	.	Parent=Os12t0533700-01
Chr12	irgsp1_rep	CDS	21220804	21221059	.	+	0	Parent=Os12t0533700-01
Chr12	irgsp1_rep	CDS	21221570	21221763	.	+	2	Parent=Os12t0533700-01
Chr12	irgsp1_rep	CDS	21221952	21222158	.	+	0	Parent=Os12t0533700-01
Chr12	irgsp1_rep	CDS	21222231	21222348	.	+	0	Parent=Os12t0533700-01
Chr12	irgsp1_rep	CDS	21222441	21222517	.	+	2	Parent=Os12t0533700-01
Chr12	irgsp1_rep	CDS	21222629	21222808	.	+	0	Parent=Os12t0533700-01
Chr12	irgsp1_rep	CDS	21223428	21223472	.	+	0	Parent=Os12t0533700-01
Chr12	irgsp1_rep	CDS	21224425	21224529	.	+	0	Parent=Os12t0533700-01
Chr12	irgsp1_rep	CDS	21225231	21225344	.	+	0	Parent=Os12t0533700-01
Chr12	irgsp1_rep	CDS	21225423	21225473	.	+	0	Parent=Os12t0533700-01
Chr12	irgsp1_rep	three_prime_UTR	21225474	21225582	.	+	.	Parent=Os12t0533700-01
Chr12	irgsp1_rep	mRNA	21225806	21229401	.	-	.	ID=Os12t0533800-01;Name=Os12t0533800-01;Locus_id=Os12g0533800;Note=Mitochondrial substrate/solute carrier domain containing protein.;Transcript_evidence=AK071593 (DDBJ%2C Best hit);ORF_evidence=B9GDI0 (UniProt);InterPro=Mitochondrial substrate/solute carrier (IPR018108),Mitochondrial carrier domain (IPR023395);NIAS_FLcDNA=J023103G12;TENOR=Os12t0533800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	21229119	21229401	.	-	.	Parent=Os12t0533800-01
Chr12	irgsp1_rep	CDS	21228932	21229118	.	-	0	Parent=Os12t0533800-01
Chr12	irgsp1_rep	CDS	21227973	21228034	.	-	2	Parent=Os12t0533800-01
Chr12	irgsp1_rep	CDS	21227639	21227875	.	-	0	Parent=Os12t0533800-01
Chr12	irgsp1_rep	CDS	21227390	21227554	.	-	0	Parent=Os12t0533800-01
Chr12	irgsp1_rep	CDS	21227281	21227311	.	-	0	Parent=Os12t0533800-01
Chr12	irgsp1_rep	CDS	21227168	21227181	.	-	2	Parent=Os12t0533800-01
Chr12	irgsp1_rep	three_prime_UTR	21227049	21227167	.	-	.	Parent=Os12t0533800-01
Chr12	irgsp1_rep	three_prime_UTR	21226545	21226582	.	-	.	Parent=Os12t0533800-01
Chr12	irgsp1_rep	three_prime_UTR	21225806	21226233	.	-	.	Parent=Os12t0533800-01
Chr12	irgsp1_rep	mRNA	21230590	21232506	.	-	.	ID=Os12t0534000-01;Name=Os12t0534000-01;Locus_id=Os12g0534000;Oryzabase Gene Symbol Synonym(s)=DHQDT/SDH;Oryzabase Gene Name Synonym(s)=3-dehydroquinate dehydratase/shikimate dehydrogenase;Note=Similar to Dehydroquinate dehydratase/shikimate:NADP oxidoreductase (EC 4.2.1.10) (EC 1.1.1.25).;Transcript_evidence=AK058923 (DDBJ%2C Best hit);ORF_evidence=NP_001130790.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166);InterPro=Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase (IPR006151),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=001-009-B12;Oryzabase=16771;Expression=AK058923;TENOR=Os12t0534000-01;KEGG=Os12t0534000-01 (EC:4.2.1.10)
Chr12	irgsp1_rep	five_prime_UTR	21232506	21232506	.	-	.	Parent=Os12t0534000-01
Chr12	irgsp1_rep	CDS	21232484	21232505	.	-	0	Parent=Os12t0534000-01
Chr12	irgsp1_rep	CDS	21232263	21232328	.	-	2	Parent=Os12t0534000-01
Chr12	irgsp1_rep	CDS	21231298	21231446	.	-	2	Parent=Os12t0534000-01
Chr12	irgsp1_rep	CDS	21231048	21231210	.	-	0	Parent=Os12t0534000-01
Chr12	irgsp1_rep	CDS	21230903	21230949	.	-	2	Parent=Os12t0534000-01
Chr12	irgsp1_rep	three_prime_UTR	21230590	21230902	.	-	.	Parent=Os12t0534000-01
Chr12	irgsp1_rep	mRNA	21238294	21239733	.	-	.	ID=Os12t0534100-01;Name=Os12t0534100-01;Locus_id=Os12g0534100;Note=Conserved hypothetical protein.;Transcript_evidence=AK071079 (DDBJ%2C Best hit);ORF_evidence=A2ZL80 (UniProt);NIAS_FLcDNA=J023076N12;Expression=AK071079;TENOR=Os12t0534100-01;KEGG=Os12t0534100-01
Chr12	irgsp1_rep	five_prime_UTR	21239724	21239733	.	-	.	Parent=Os12t0534100-01
Chr12	irgsp1_rep	CDS	21239475	21239723	.	-	0	Parent=Os12t0534100-01
Chr12	irgsp1_rep	CDS	21238523	21238792	.	-	0	Parent=Os12t0534100-01
Chr12	irgsp1_rep	three_prime_UTR	21238294	21238522	.	-	.	Parent=Os12t0534100-01
Chr12	irgsp1_rep	mRNA	21240404	21243389	.	-	.	ID=Os12t0534200-01;Name=Os12t0534200-01;Locus_id=Os12g0534200;Note=Similar to Acyl carrier protein I%2C chloroplast precursor (ACP I).;Transcript_evidence=AK120370 (DDBJ%2C Best hit),AK060472 (DDBJ%2C Best hit);ORF_evidence=A3CI16 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Molecular Function: acyl carrier activity (GO:0000036),Molecular Function: phosphopantetheine binding (GO:0031177),Molecular Function: cofactor binding (GO:0048037);InterPro=Acyl carrier protein (ACP) (IPR003231),Phosphopantetheine attachment site (IPR006162),Phosphopantetheine-binding (IPR006163),Acyl carrier protein-like (IPR009081);NIAS_FLcDNA=J013070J18,001-012-E08;Expression=AK120370;TENOR=Os12t0534200-01;KEGG=Os12t0534200-01
Chr12	irgsp1_rep	five_prime_UTR	21243305	21243389	.	-	.	Parent=Os12t0534200-01
Chr12	irgsp1_rep	CDS	21243233	21243304	.	-	0	Parent=Os12t0534200-01
Chr12	irgsp1_rep	CDS	21241541	21241651	.	-	0	Parent=Os12t0534200-01
Chr12	irgsp1_rep	CDS	21240914	21241036	.	-	0	Parent=Os12t0534200-01
Chr12	irgsp1_rep	CDS	21240707	21240835	.	-	0	Parent=Os12t0534200-01
Chr12	irgsp1_rep	three_prime_UTR	21240404	21240706	.	-	.	Parent=Os12t0534200-01
Chr12	irgsp1_rep	mRNA	21247658	21250224	.	+	.	ID=Os12t0534400-01;Name=Os12t0534400-01;Locus_id=Os12g0534400;Note=Conserved hypothetical protein.;Transcript_evidence=AK065383 (DDBJ%2C Best hit);ORF_evidence=B9GDI2 (UniProt);NIAS_FLcDNA=J013003F10;TENOR=Os12t0534400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	21247658	21247705	.	+	.	Parent=Os12t0534400-01
Chr12	irgsp1_rep	CDS	21247706	21248197	.	+	0	Parent=Os12t0534400-01
Chr12	irgsp1_rep	three_prime_UTR	21248198	21250224	.	+	.	Parent=Os12t0534400-01
Chr12	irgsp1_rep	mRNA	21252991	21253587	.	+	.	ID=Os12t0534500-00;Name=Os12t0534500-00;Locus_id=Os12g0534500;Note=Similar to barren inflorescence2.;Transcript_evidence=BT085965 (DDBJ);ORF_evidence=NP_001106051.1 (RefSeq);TENOR=Os12t0534500-00
Chr12	irgsp1_rep	five_prime_UTR	21252991	21253206	.	+	.	Parent=Os12t0534500-00
Chr12	irgsp1_rep	CDS	21253207	21253587	.	+	0	Parent=Os12t0534500-00
Chr12	irgsp1_rep	mRNA	21254021	21257370	.	+	.	ID=Os12t0534700-01;Name=Os12t0534700-01;Locus_id=Os12g0534700;Note=Protein kinase-like domain containing protein.;Transcript_evidence=AK122037 (DDBJ%2C Best hit);ORF_evidence=B8BMA3 (UniProt);NIAS_FLcDNA=J033112P03;Expression=AK122037;TENOR=Os12t0534700-01;KEGG=Os12t0534700-01
Chr12	irgsp1_rep	five_prime_UTR	21254021	21254063	.	+	.	Parent=Os12t0534700-01
Chr12	irgsp1_rep	CDS	21254064	21254253	.	+	0	Parent=Os12t0534700-01
Chr12	irgsp1_rep	CDS	21254562	21254782	.	+	2	Parent=Os12t0534700-01
Chr12	irgsp1_rep	CDS	21256582	21257166	.	+	0	Parent=Os12t0534700-01
Chr12	irgsp1_rep	three_prime_UTR	21257167	21257370	.	+	.	Parent=Os12t0534700-01
Chr12	irgsp1_rep	mRNA	21289207	21292174	.	+	.	ID=Os12t0535300-00;Name=Os12t0535300-00;Locus_id=Os12g0535300;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QPC2 (UniProt);TENOR=Os12t0535300-00;KEGG=Os12t0535300-00
Chr12	irgsp1_rep	CDS	21289207	21289417	.	+	0	Parent=Os12t0535300-00
Chr12	irgsp1_rep	CDS	21289804	21290021	.	+	2	Parent=Os12t0535300-00
Chr12	irgsp1_rep	CDS	21291587	21292174	.	+	0	Parent=Os12t0535300-00
Chr12	irgsp1_rep	mRNA	21293012	21296897	.	-	.	ID=Os12t0535400-01;Name=Os12t0535400-01;Locus_id=Os12g0535400;Note=Similar to hydrolase%2C alpha/beta fold family protein.;Transcript_evidence=AK065318 (DDBJ%2C Best hit);ORF_evidence=NP_001030665.1 (RefSeq);NIAS_FLcDNA=J013002P10;Expression=AK065318;TENOR=Os12t0535400-01;KEGG=Os12t0535400-01
Chr12	irgsp1_rep	five_prime_UTR	21296702	21296897	.	-	.	Parent=Os12t0535400-01
Chr12	irgsp1_rep	CDS	21296473	21296701	.	-	0	Parent=Os12t0535400-01
Chr12	irgsp1_rep	CDS	21295489	21295680	.	-	2	Parent=Os12t0535400-01
Chr12	irgsp1_rep	CDS	21295334	21295398	.	-	2	Parent=Os12t0535400-01
Chr12	irgsp1_rep	three_prime_UTR	21293012	21295333	.	-	.	Parent=Os12t0535400-01
Chr12	irgsp1_rep	mRNA	21322246	21324437	.	+	.	ID=Os12t0535900-01;Name=Os12t0535900-01;Locus_id=Os12g0535900;Note=Plus-3 domain containing protein.;Transcript_evidence=AK069422 (DDBJ%2C Best hit);ORF_evidence=A3CI27 (UniProt);GO=Biological Process: transcription initiation%2C DNA-dependent (GO:0006352),Biological Process: histone modification (GO:0016570),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Plus-3 (IPR004343);NIAS_FLcDNA=J023020J22;Expression=AK069422;TENOR=Os12t0535900-01;KEGG=Os12t0535900-01
Chr12	irgsp1_rep	five_prime_UTR	21322246	21322246	.	+	.	Parent=Os12t0535900-01
Chr12	irgsp1_rep	CDS	21322247	21324046	.	+	0	Parent=Os12t0535900-01
Chr12	irgsp1_rep	three_prime_UTR	21324047	21324437	.	+	.	Parent=Os12t0535900-01
Chr12	irgsp1_rep	mRNA	21322492	21324301	.	+	.	ID=Os12t0535900-02;Name=Os12t0535900-02;Locus_id=Os12g0535900;Note=Similar to cDNA clone:J023020J22%2C full insert sequence.;Transcript_evidence=AK109358 (DDBJ%2C Best hit);ORF_evidence=Q2QPB7 (UniProt);GO=Biological Process: transcription initiation%2C DNA-dependent (GO:0006352),Biological Process: histone modification (GO:0016570),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Plus-3 (IPR004343),Plus-3 domain%2C subgroup (IPR018144);NIAS_FLcDNA=006-206-A10;Expression=AK109358;TENOR=Os12t0535900-02;KEGG=Os12t0535900-02
Chr12	irgsp1_rep	five_prime_UTR	21322492	21322492	.	+	.	Parent=Os12t0535900-02
Chr12	irgsp1_rep	CDS	21322493	21324046	.	+	0	Parent=Os12t0535900-02
Chr12	irgsp1_rep	three_prime_UTR	21324047	21324301	.	+	.	Parent=Os12t0535900-02
Chr12	irgsp1_rep	mRNA	21324775	21327652	.	-	.	ID=Os12t0536000-01;Name=Os12t0536000-01;Locus_id=Os12g0536000;RAP-DB Gene Symbol Synonym(s)=TCM12%2C iPGAM;RAP-DB Gene Name Synonym(s)=thermo-sensitive chlorosis mutant 12%2C "2%2C 3-bisphosphoglycerate-independent phosphoglycerate mutase";CGSNL Gene Symbol=TCM12;CGSNL Gene Name=THERMO-SENSITIVE CHLOROSIS MUTANT 12;Oryzabase Gene Symbol Synonym(s)=OsTCM12%2C iPGAM%2C OsiPGAM;Oryzabase Gene Name Synonym(s)=thermo-sensitive chlorosis mutant 12%2C "2%2C 3-bisphosphoglycerate-independent phosphoglycerate mutase";Note="2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase"%2C "Chlorophyll synthesis%2C photosynthesis and chloroplast development at seedling stage at low temperature";Transcript_evidence=AK102566;ORF_evidence=Q2QPB6;GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase activity (GO:0046537),Molecular Function: metal ion binding (GO:0046872);InterPro=Alkaline-phosphatase-like%2C core domain superfamily (IPR017850),2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase superfamily (IPR042253),2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase (IPR004456),Metalloenzyme (IPR006124);NIAS_FLcDNA=J033097K23;Manual Curation=February 14%2C 2020;Literature_PMID=30803106;Oryzabase=23310;TENOR=Os12t0536000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=nucleus (GO:0005634), membrane (GO:0016020)
Chr12	irgsp1_rep	five_prime_UTR	21327394	21327652	.	-	.	Parent=Os12t0536000-01
Chr12	irgsp1_rep	CDS	21327241	21327393	.	-	0	Parent=Os12t0536000-01
Chr12	irgsp1_rep	CDS	21326715	21326860	.	-	0	Parent=Os12t0536000-01
Chr12	irgsp1_rep	CDS	21326337	21326613	.	-	1	Parent=Os12t0536000-01
Chr12	irgsp1_rep	CDS	21325516	21325788	.	-	0	Parent=Os12t0536000-01
Chr12	irgsp1_rep	CDS	21324956	21325435	.	-	0	Parent=Os12t0536000-01
Chr12	irgsp1_rep	three_prime_UTR	21324775	21324955	.	-	.	Parent=Os12t0536000-01
Chr12	irgsp1_rep	mRNA	21330362	21337057	.	+	.	ID=Os12t0536200-01;Name=Os12t0536200-01;Locus_id=Os12g0536200;Note=Conserved hypothetical protein.;Transcript_evidence=AK065407 (DDBJ%2C Best hit);ORF_evidence=B8BMB0 (UniProt);NIAS_FLcDNA=J013003H24;TENOR=Os12t0536200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	21330362	21330529	.	+	.	Parent=Os12t0536200-01
Chr12	irgsp1_rep	five_prime_UTR	21331731	21331820	.	+	.	Parent=Os12t0536200-01
Chr12	irgsp1_rep	five_prime_UTR	21332015	21332522	.	+	.	Parent=Os12t0536200-01
Chr12	irgsp1_rep	CDS	21332523	21332747	.	+	0	Parent=Os12t0536200-01
Chr12	irgsp1_rep	three_prime_UTR	21332748	21333300	.	+	.	Parent=Os12t0536200-01
Chr12	irgsp1_rep	three_prime_UTR	21333478	21333603	.	+	.	Parent=Os12t0536200-01
Chr12	irgsp1_rep	three_prime_UTR	21334248	21334307	.	+	.	Parent=Os12t0536200-01
Chr12	irgsp1_rep	three_prime_UTR	21335091	21335311	.	+	.	Parent=Os12t0536200-01
Chr12	irgsp1_rep	three_prime_UTR	21335399	21335585	.	+	.	Parent=Os12t0536200-01
Chr12	irgsp1_rep	three_prime_UTR	21336223	21336298	.	+	.	Parent=Os12t0536200-01
Chr12	irgsp1_rep	three_prime_UTR	21336407	21336516	.	+	.	Parent=Os12t0536200-01
Chr12	irgsp1_rep	three_prime_UTR	21336894	21337057	.	+	.	Parent=Os12t0536200-01
Chr12	irgsp1_rep	mRNA	21337505	21338221	.	-	.	ID=Os12t0536300-00;Name=Os12t0536300-00;Locus_id=Os12g0536300;Oryzabase Gene Symbol Synonym(s)=OsbHLH184%2C bHLH184;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 184;Note=Hypothetical conserved gene.;Transcript_evidence=EU965379 (DDBJ);ORF_evidence=Q2QPB3 (UniProt);Oryzabase=22855;TENOR=Os12t0536300-00;KEGG=Os12t0536300-00
Chr12	irgsp1_rep	CDS	21338032	21338221	.	-	0	Parent=Os12t0536300-00
Chr12	irgsp1_rep	CDS	21337505	21337860	.	-	2	Parent=Os12t0536300-00
Chr12	irgsp1_rep	mRNA	21340296	21340904	.	+	.	ID=Os12t0536500-00;Name=Os12t0536500-00;Locus_id=Os12g0536500;Note=Non-protein coding transcript.;Transcript_evidence=CT835541 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os12t0536500-00
Chr12	irgsp1_rep	exon	21340296	21340904	.	+	.	Parent=Os12t0536500-00
Chr12	irgsp1_rep	mRNA	21368785	21372033	.	+	.	ID=Os12t0537000-00;Name=Os12t0537000-00;Locus_id=Os12g0537000;Note=Similar to HAT family dimerisation domain containing protein.;Transcript_evidence=AK122139 (DDBJ%2C Secondary hit);ORF_evidence=Q2QPA8 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677);InterPro=Zinc finger%2C BED-type predicted (IPR003656),Domain of unknown function DUF659 (IPR007021),Ribonuclease H-like (IPR012337);TENOR=Os12t0537000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	21368785	21369073	.	+	.	Parent=Os12t0537000-00
Chr12	irgsp1_rep	CDS	21369074	21369089	.	+	0	Parent=Os12t0537000-00
Chr12	irgsp1_rep	CDS	21369370	21371222	.	+	2	Parent=Os12t0537000-00
Chr12	irgsp1_rep	three_prime_UTR	21371223	21371397	.	+	.	Parent=Os12t0537000-00
Chr12	irgsp1_rep	three_prime_UTR	21371515	21371728	.	+	.	Parent=Os12t0537000-00
Chr12	irgsp1_rep	three_prime_UTR	21371756	21372033	.	+	.	Parent=Os12t0537000-00
Chr12	irgsp1_rep	mRNA	21410205	21413460	.	+	.	ID=Os12t0538000-00;Name=Os12t0538000-00;Locus_id=Os12g0538000;Note=Similar to HAT family dimerisation domain containing protein.;Transcript_evidence=AK122139 (DDBJ%2C Secondary hit);ORF_evidence=Q2QPA8 (UniProt);GO=Molecular Function: DNA binding (GO:0003677);InterPro=Zinc finger%2C BED-type predicted (IPR003656);TENOR=Os12t0538000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	21410205	21410493	.	+	.	Parent=Os12t0538000-00
Chr12	irgsp1_rep	CDS	21410494	21410509	.	+	0	Parent=Os12t0538000-00
Chr12	irgsp1_rep	CDS	21410790	21411361	.	+	2	Parent=Os12t0538000-00
Chr12	irgsp1_rep	three_prime_UTR	21411362	21412815	.	+	.	Parent=Os12t0538000-00
Chr12	irgsp1_rep	three_prime_UTR	21412933	21413146	.	+	.	Parent=Os12t0538000-00
Chr12	irgsp1_rep	three_prime_UTR	21413174	21413460	.	+	.	Parent=Os12t0538000-00
Chr12	irgsp1_rep	mRNA	21420866	21424123	.	+	.	ID=Os12t0538066-00;Name=Os12t0538066-00;Locus_id=Os12g0538066;Note=Similar to HAT family dimerisation domain containing protein.;Transcript_evidence=AK122139 (DDBJ%2C Secondary hit);ORF_evidence=Q2QPA8 (UniProt);GO=Molecular Function: DNA binding (GO:0003677);InterPro=Zinc finger%2C BED-type predicted (IPR003656);Expression=AK122139;TENOR=Os12t0538066-00;KEGG=Os12t0538066-00
Chr12	irgsp1_rep	five_prime_UTR	21420866	21421154	.	+	.	Parent=Os12t0538066-00
Chr12	irgsp1_rep	CDS	21421155	21421170	.	+	0	Parent=Os12t0538066-00
Chr12	irgsp1_rep	CDS	21421451	21422049	.	+	2	Parent=Os12t0538066-00
Chr12	irgsp1_rep	three_prime_UTR	21422050	21423478	.	+	.	Parent=Os12t0538066-00
Chr12	irgsp1_rep	three_prime_UTR	21423596	21423809	.	+	.	Parent=Os12t0538066-00
Chr12	irgsp1_rep	three_prime_UTR	21423837	21424123	.	+	.	Parent=Os12t0538066-00
Chr12	irgsp1_rep	mRNA	21429635	21431701	.	-	.	ID=Os12t0538100-01;Name=Os12t0538100-01;Locus_id=Os12g0538100;Note=rRNA processing domain containing protein.;Transcript_evidence=AK109170 (DDBJ%2C Best hit);ORF_evidence=A2ZLA2 (UniProt);InterPro=rRNA processing (IPR013730);NIAS_FLcDNA=002-155-H05;Expression=AK109170;TENOR=Os12t0538100-01;KEGG=Os12t0538100-01
Chr12	irgsp1_rep	five_prime_UTR	21431590	21431701	.	-	.	Parent=Os12t0538100-01
Chr12	irgsp1_rep	CDS	21431391	21431589	.	-	0	Parent=Os12t0538100-01
Chr12	irgsp1_rep	CDS	21430374	21430480	.	-	2	Parent=Os12t0538100-01
Chr12	irgsp1_rep	CDS	21429856	21430143	.	-	0	Parent=Os12t0538100-01
Chr12	irgsp1_rep	three_prime_UTR	21429635	21429855	.	-	.	Parent=Os12t0538100-01
Chr12	irgsp1_rep	mRNA	21441319	21447715	.	+	.	ID=Os12t0538300-01;Name=Os12t0538300-01;Locus_id=Os12g0538300;Note=Dor1-like protein family protein.;Transcript_evidence=AK067402 (DDBJ%2C Best hit);ORF_evidence=NP_568256.1 (RefSeq);InterPro=Dor1-like protein (IPR007255),Cullin repeat-like-containing domain (IPR016159),Conserved oligomeric Golgi complex%2C subunit 8 (IPR016632);NIAS_FLcDNA=J013106G16;Expression=AK067402;TENOR=Os12t0538300-01;KEGG=Os12t0538300-01
Chr12	irgsp1_rep	five_prime_UTR	21441319	21441352	.	+	.	Parent=Os12t0538300-01
Chr12	irgsp1_rep	CDS	21441353	21441520	.	+	0	Parent=Os12t0538300-01
Chr12	irgsp1_rep	CDS	21441613	21441765	.	+	0	Parent=Os12t0538300-01
Chr12	irgsp1_rep	CDS	21444328	21444476	.	+	0	Parent=Os12t0538300-01
Chr12	irgsp1_rep	CDS	21444676	21444753	.	+	1	Parent=Os12t0538300-01
Chr12	irgsp1_rep	CDS	21444831	21444924	.	+	1	Parent=Os12t0538300-01
Chr12	irgsp1_rep	CDS	21445147	21445221	.	+	0	Parent=Os12t0538300-01
Chr12	irgsp1_rep	CDS	21445568	21445864	.	+	0	Parent=Os12t0538300-01
Chr12	irgsp1_rep	CDS	21445949	21446016	.	+	0	Parent=Os12t0538300-01
Chr12	irgsp1_rep	CDS	21446103	21446157	.	+	1	Parent=Os12t0538300-01
Chr12	irgsp1_rep	CDS	21446364	21446502	.	+	0	Parent=Os12t0538300-01
Chr12	irgsp1_rep	CDS	21446666	21446850	.	+	2	Parent=Os12t0538300-01
Chr12	irgsp1_rep	CDS	21446975	21447346	.	+	0	Parent=Os12t0538300-01
Chr12	irgsp1_rep	three_prime_UTR	21447347	21447715	.	+	.	Parent=Os12t0538300-01
Chr12	irgsp1_rep	mRNA	21456307	21459844	.	+	.	ID=Os12t0538500-01;Name=Os12t0538500-01;Locus_id=Os12g0538500;Note=Similar to PGPD14 protein.;Transcript_evidence=AK069502 (DDBJ%2C Best hit),AK059316 (DDBJ%2C Best hit),AK104170 (DDBJ%2C Best hit),AK104287 (DDBJ%2C Best hit);ORF_evidence=NP_001149168.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: metal ion binding (GO:0046872);InterPro=Zinc finger%2C RING-type (IPR001841),Rubredoxin-type Fe(Cys)4 protein (IPR004039),Zinc finger%2C CHY-type (IPR008913),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C CTCHY-type (IPR017921),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J023020D18,001-025-H03,006-212-F09,001-007-D07;Oryzabase=19591;TENOR=Os12t0538500-01
Chr12	irgsp1_rep	five_prime_UTR	21456307	21456428	.	+	.	Parent=Os12t0538500-01
Chr12	irgsp1_rep	CDS	21456429	21456523	.	+	0	Parent=Os12t0538500-01
Chr12	irgsp1_rep	CDS	21456774	21456861	.	+	1	Parent=Os12t0538500-01
Chr12	irgsp1_rep	CDS	21457443	21457487	.	+	0	Parent=Os12t0538500-01
Chr12	irgsp1_rep	CDS	21457582	21457614	.	+	0	Parent=Os12t0538500-01
Chr12	irgsp1_rep	CDS	21457707	21457784	.	+	0	Parent=Os12t0538500-01
Chr12	irgsp1_rep	CDS	21457874	21457917	.	+	0	Parent=Os12t0538500-01
Chr12	irgsp1_rep	CDS	21457992	21458032	.	+	1	Parent=Os12t0538500-01
Chr12	irgsp1_rep	CDS	21458329	21458411	.	+	2	Parent=Os12t0538500-01
Chr12	irgsp1_rep	CDS	21458488	21458579	.	+	0	Parent=Os12t0538500-01
Chr12	irgsp1_rep	CDS	21458695	21458764	.	+	1	Parent=Os12t0538500-01
Chr12	irgsp1_rep	CDS	21459065	21459103	.	+	0	Parent=Os12t0538500-01
Chr12	irgsp1_rep	CDS	21459370	21459540	.	+	0	Parent=Os12t0538500-01
Chr12	irgsp1_rep	three_prime_UTR	21459541	21459844	.	+	.	Parent=Os12t0538500-01
Chr12	irgsp1_rep	mRNA	21468038	21468272	.	+	.	ID=Os12t0538550-00;Name=Os12t0538550-00;Locus_id=Os12g0538550;Note=Similar to ribosomal protein S7.;Transcript_evidence=EU940710 (DDBJ);ORF_evidence=YP_588404.1 (RefSeq);TENOR=Os12t0538550-00;KEGG=Os12t0538550-00
Chr12	irgsp1_rep	five_prime_UTR	21468038	21468124	.	+	.	Parent=Os12t0538550-00
Chr12	irgsp1_rep	CDS	21468125	21468247	.	+	0	Parent=Os12t0538550-00
Chr12	irgsp1_rep	three_prime_UTR	21468248	21468272	.	+	.	Parent=Os12t0538550-00
Chr12	irgsp1_rep	mRNA	21469144	21469455	.	+	.	ID=Os12t0538600-00;Name=Os12t0538600-00;Locus_id=Os12g0538600;CGSNL Gene Symbol=GRX28;CGSNL Gene Name=GLUTAREDOXIN 28;Oryzabase Gene Symbol Synonym(s)=OsGRX28;Oryzabase Gene Name Synonym(s)=glutaredoxin 28%2C glutaredoxin-C14;Note=Thioredoxin fold domain containing protein.;Transcript_evidence=Q0IMV4 (UniProt);ORF_evidence=Q0IMV4 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin (IPR002109),Glutaredoxin-like%2C plant II (IPR011905),Thioredoxin-like fold (IPR012336);Oryzabase=13578;TENOR=Os12t0538600-00
Chr12	irgsp1_rep	CDS	21469144	21469455	.	+	0	Parent=Os12t0538600-00
Chr12	irgsp1_rep	mRNA	21480112	21481099	.	+	.	ID=Os12t0538700-01;Name=Os12t0538700-01;Locus_id=Os12g0538700;CGSNL Gene Symbol=GRX29;CGSNL Gene Name=GLUTAREDOXIN 29;Oryzabase Gene Symbol Synonym(s)=OsGRX29;Oryzabase Gene Name Synonym(s)=glutaredoxin 29;Note=Similar to AT.I.24-1 protein (Fragment).;Transcript_evidence=AK063610 (DDBJ%2C Best hit);ORF_evidence=Q2QP86 (UniProt);GO=Biological Process: cell redox homeostasis (GO:0045454),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);InterPro=Glutaredoxin (IPR002109),Glutaredoxin-like%2C plant II (IPR011905),Thioredoxin-like fold (IPR012336),Glutaredoxin subgroup (IPR014025);NIAS_FLcDNA=001-118-D03;Oryzabase=13579;Expression=AK063610;TENOR=Os12t0538700-01;KEGG=Os12t0538700-01
Chr12	irgsp1_rep	five_prime_UTR	21480112	21480241	.	+	.	Parent=Os12t0538700-01
Chr12	irgsp1_rep	CDS	21480242	21480556	.	+	0	Parent=Os12t0538700-01
Chr12	irgsp1_rep	three_prime_UTR	21480557	21481099	.	+	.	Parent=Os12t0538700-01
Chr12	irgsp1_rep	mRNA	21488044	21493700	.	+	.	ID=Os12t0538800-01;Name=Os12t0538800-01;Locus_id=Os12g0538800;Note=Kelch-type beta propeller domain containing protein.;Transcript_evidence=AK100645 (DDBJ%2C Best hit);ORF_evidence=Q2R069 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Kelch repeat type 2 (IPR011498),Kelch-type beta propeller (IPR015915);NIAS_FLcDNA=J023110K24;Expression=AK100645;TENOR=Os12t0538800-01;KEGG=Os12t0538800-01
Chr12	irgsp1_rep	five_prime_UTR	21488044	21488239	.	+	.	Parent=Os12t0538800-01
Chr12	irgsp1_rep	five_prime_UTR	21488699	21488773	.	+	.	Parent=Os12t0538800-01
Chr12	irgsp1_rep	CDS	21488774	21488820	.	+	0	Parent=Os12t0538800-01
Chr12	irgsp1_rep	CDS	21489438	21489516	.	+	1	Parent=Os12t0538800-01
Chr12	irgsp1_rep	CDS	21489613	21489771	.	+	0	Parent=Os12t0538800-01
Chr12	irgsp1_rep	CDS	21489880	21489957	.	+	0	Parent=Os12t0538800-01
Chr12	irgsp1_rep	CDS	21490048	21490152	.	+	0	Parent=Os12t0538800-01
Chr12	irgsp1_rep	CDS	21490348	21490414	.	+	0	Parent=Os12t0538800-01
Chr12	irgsp1_rep	CDS	21490488	21490549	.	+	2	Parent=Os12t0538800-01
Chr12	irgsp1_rep	CDS	21490634	21490773	.	+	0	Parent=Os12t0538800-01
Chr12	irgsp1_rep	CDS	21490979	21491105	.	+	1	Parent=Os12t0538800-01
Chr12	irgsp1_rep	CDS	21491184	21491298	.	+	0	Parent=Os12t0538800-01
Chr12	irgsp1_rep	CDS	21491437	21491525	.	+	2	Parent=Os12t0538800-01
Chr12	irgsp1_rep	CDS	21491760	21491843	.	+	0	Parent=Os12t0538800-01
Chr12	irgsp1_rep	CDS	21492084	21492446	.	+	0	Parent=Os12t0538800-01
Chr12	irgsp1_rep	CDS	21492527	21492971	.	+	0	Parent=Os12t0538800-01
Chr12	irgsp1_rep	CDS	21493060	21493121	.	+	2	Parent=Os12t0538800-01
Chr12	irgsp1_rep	CDS	21493399	21493473	.	+	0	Parent=Os12t0538800-01
Chr12	irgsp1_rep	three_prime_UTR	21493474	21493700	.	+	.	Parent=Os12t0538800-01
Chr12	irgsp1_rep	mRNA	21489631	21493123	.	-	.	ID=Os12t0538850-00;Name=Os12t0538850-00;Locus_id=Os12g0538850;Note=Non-protein coding transcript.;Transcript_evidence=tplb0031a05 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os12t0538850-00
Chr12	irgsp1_rep	exon	21493049	21493123	.	-	.	Parent=Os12t0538850-00
Chr12	irgsp1_rep	exon	21492559	21492965	.	-	.	Parent=Os12t0538850-00
Chr12	irgsp1_rep	exon	21492103	21492426	.	-	.	Parent=Os12t0538850-00
Chr12	irgsp1_rep	exon	21491760	21491857	.	-	.	Parent=Os12t0538850-00
Chr12	irgsp1_rep	exon	21491450	21491525	.	-	.	Parent=Os12t0538850-00
Chr12	irgsp1_rep	exon	21491165	21491310	.	-	.	Parent=Os12t0538850-00
Chr12	irgsp1_rep	exon	21490974	21491081	.	-	.	Parent=Os12t0538850-00
Chr12	irgsp1_rep	exon	21490625	21490767	.	-	.	Parent=Os12t0538850-00
Chr12	irgsp1_rep	exon	21490467	21490547	.	-	.	Parent=Os12t0538850-00
Chr12	irgsp1_rep	exon	21490046	21490194	.	-	.	Parent=Os12t0538850-00
Chr12	irgsp1_rep	exon	21489840	21489955	.	-	.	Parent=Os12t0538850-00
Chr12	irgsp1_rep	exon	21489631	21489732	.	-	.	Parent=Os12t0538850-00
Chr12	irgsp1_rep	mRNA	21493825	21500839	.	-	.	ID=Os12t0538900-01;Name=Os12t0538900-01;Locus_id=Os12g0538900;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=AK066962 (DDBJ%2C Best hit);ORF_evidence=NP_566820.1 (RefSeq);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: Golgi vesicle transport (GO:0048193),Biological Process: vesicle fusion with Golgi apparatus (GO:0048280),Cellular Component: Golgi membrane (GO:0000139),Cellular Component: cytoplasm (GO:0005737),Cellular Component: membrane (GO:0016020),Molecular Function: binding (GO:0005488),Molecular Function: protein transporter activity (GO:0008565);InterPro=Vesicle tethering protein Uso1/P115-like %2C head domain (IPR006953),Uso1/p115-like vesicle tethering protein%2C C-terminal (IPR006955),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024),Vesicle tethering protein p115-like (IPR024095);NIAS_FLcDNA=J013091G19;Expression=AK066962;TENOR=Os12t0538900-01;KEGG=Os12t0538900-01
Chr12	irgsp1_rep	five_prime_UTR	21500721	21500839	.	-	.	Parent=Os12t0538900-01
Chr12	irgsp1_rep	five_prime_UTR	21500602	21500615	.	-	.	Parent=Os12t0538900-01
Chr12	irgsp1_rep	CDS	21500539	21500601	.	-	0	Parent=Os12t0538900-01
Chr12	irgsp1_rep	CDS	21500170	21500222	.	-	0	Parent=Os12t0538900-01
Chr12	irgsp1_rep	CDS	21499904	21500031	.	-	1	Parent=Os12t0538900-01
Chr12	irgsp1_rep	CDS	21499609	21499808	.	-	2	Parent=Os12t0538900-01
Chr12	irgsp1_rep	CDS	21499444	21499517	.	-	0	Parent=Os12t0538900-01
Chr12	irgsp1_rep	CDS	21499288	21499357	.	-	1	Parent=Os12t0538900-01
Chr12	irgsp1_rep	CDS	21498656	21498709	.	-	0	Parent=Os12t0538900-01
Chr12	irgsp1_rep	CDS	21498451	21498546	.	-	0	Parent=Os12t0538900-01
Chr12	irgsp1_rep	CDS	21498262	21498312	.	-	0	Parent=Os12t0538900-01
Chr12	irgsp1_rep	CDS	21498097	21498186	.	-	0	Parent=Os12t0538900-01
Chr12	irgsp1_rep	CDS	21497857	21497973	.	-	0	Parent=Os12t0538900-01
Chr12	irgsp1_rep	CDS	21497696	21497767	.	-	0	Parent=Os12t0538900-01
Chr12	irgsp1_rep	CDS	21497406	21497591	.	-	0	Parent=Os12t0538900-01
Chr12	irgsp1_rep	CDS	21496944	21497044	.	-	0	Parent=Os12t0538900-01
Chr12	irgsp1_rep	CDS	21496777	21496825	.	-	1	Parent=Os12t0538900-01
Chr12	irgsp1_rep	CDS	21496378	21496443	.	-	0	Parent=Os12t0538900-01
Chr12	irgsp1_rep	CDS	21495207	21495965	.	-	0	Parent=Os12t0538900-01
Chr12	irgsp1_rep	CDS	21493995	21494555	.	-	0	Parent=Os12t0538900-01
Chr12	irgsp1_rep	three_prime_UTR	21493825	21493994	.	-	.	Parent=Os12t0538900-01
Chr12	irgsp1_rep	mRNA	21493864	21495950	.	-	.	ID=Os12t0538900-02;Name=Os12t0538900-02;Locus_id=Os12g0538900;Note=Similar to predicted protein.;Transcript_evidence=AK103275 (DDBJ%2C Best hit);ORF_evidence=NP_566820.1 (RefSeq);GO=Biological Process: intracellular protein transport (GO:0006886),Biological Process: Golgi vesicle transport (GO:0048193),Biological Process: vesicle fusion with Golgi apparatus (GO:0048280),Cellular Component: Golgi membrane (GO:0000139),Cellular Component: cytoplasm (GO:0005737),Cellular Component: membrane (GO:0016020),Molecular Function: protein transporter activity (GO:0008565);InterPro=Vesicle tethering protein Uso1/P115-like %2C head domain (IPR006953),Uso1/p115-like vesicle tethering protein%2C C-terminal (IPR006955),Vesicle tethering protein p115-like (IPR024095);NIAS_FLcDNA=J033124K10;Expression=AK103275;TENOR=Os12t0538900-02;KEGG=Os12t0538900-02
Chr12	irgsp1_rep	CDS	21495207	21495950	.	-	0	Parent=Os12t0538900-02
Chr12	irgsp1_rep	CDS	21493995	21494555	.	-	0	Parent=Os12t0538900-02
Chr12	irgsp1_rep	three_prime_UTR	21493864	21493994	.	-	.	Parent=Os12t0538900-02
Chr12	irgsp1_rep	mRNA	21551915	21555410	.	-	.	ID=Os12t0539333-01;Name=Os12t0539333-01;Locus_id=Os12g0539333;Note=Conserved hypothetical protein.;Transcript_evidence=AK288600 (DDBJ%2C Best hit);ORF_evidence=NP_001176995.1 (RefSeq);NIAS_FLcDNA=J090052D07;TENOR=Os12t0539333-01;KEGG=Os12t0539333-01
Chr12	irgsp1_rep	five_prime_UTR	21555410	21555410	.	-	.	Parent=Os12t0539333-01
Chr12	irgsp1_rep	CDS	21554708	21555409	.	-	0	Parent=Os12t0539333-01
Chr12	irgsp1_rep	three_prime_UTR	21551915	21554707	.	-	.	Parent=Os12t0539333-01
Chr12	irgsp1_rep	mRNA	21554576	21555364	.	-	.	ID=Os12t0539333-02;Name=Os12t0539333-02;Locus_id=Os12g0539333;Note=Conserved hypothetical protein.;Transcript_evidence=AK242608 (DDBJ%2C Best hit);ORF_evidence=NP_001176995.1 (RefSeq);NIAS_FLcDNA=J090015F22;TENOR=Os12t0539333-02;KEGG=Os12t0539333-02
Chr12	irgsp1_rep	CDS	21554708	21555364	.	-	0	Parent=Os12t0539333-02
Chr12	irgsp1_rep	three_prime_UTR	21554576	21554707	.	-	.	Parent=Os12t0539333-02
Chr12	irgsp1_rep	mRNA	21546209	21546525	.	+	.	ID=Os12t0539400-00;Name=Os12t0539400-00;Locus_id=Os12g0539400;Note=Hypothetical conserved gene.;Transcript_evidence=CT828588 (DDBJ%2C Secondary hit);ORF_evidence=Q2QP77 (UniProt);TENOR=Os12t0539400-00;KEGG=Os12t0539400-00
Chr12	irgsp1_rep	CDS	21546209	21546280	.	+	0	Parent=Os12t0539400-00
Chr12	irgsp1_rep	three_prime_UTR	21546281	21546525	.	+	.	Parent=Os12t0539400-00
Chr12	irgsp1_rep	mRNA	21560083	21567619	.	+	.	ID=Os12t0539700-01;Name=Os12t0539700-01;Locus_id=Os12g0539700;Note=Conserved hypothetical protein.;Transcript_evidence=AK099743 (DDBJ%2C Best hit);ORF_evidence=Q2QP74 (UniProt);NIAS_FLcDNA=J013091H17;TENOR=Os12t0539700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	21560083	21560243	.	+	.	Parent=Os12t0539700-01
Chr12	irgsp1_rep	five_prime_UTR	21560486	21560580	.	+	.	Parent=Os12t0539700-01
Chr12	irgsp1_rep	five_prime_UTR	21560888	21560984	.	+	.	Parent=Os12t0539700-01
Chr12	irgsp1_rep	five_prime_UTR	21561903	21561958	.	+	.	Parent=Os12t0539700-01
Chr12	irgsp1_rep	five_prime_UTR	21562061	21562129	.	+	.	Parent=Os12t0539700-01
Chr12	irgsp1_rep	five_prime_UTR	21562221	21562289	.	+	.	Parent=Os12t0539700-01
Chr12	irgsp1_rep	five_prime_UTR	21562517	21562726	.	+	.	Parent=Os12t0539700-01
Chr12	irgsp1_rep	CDS	21562727	21562748	.	+	0	Parent=Os12t0539700-01
Chr12	irgsp1_rep	CDS	21562873	21562944	.	+	2	Parent=Os12t0539700-01
Chr12	irgsp1_rep	CDS	21563069	21564460	.	+	2	Parent=Os12t0539700-01
Chr12	irgsp1_rep	CDS	21564607	21564632	.	+	2	Parent=Os12t0539700-01
Chr12	irgsp1_rep	three_prime_UTR	21564633	21567619	.	+	.	Parent=Os12t0539700-01
Chr12	irgsp1_rep	mRNA	21560132	21567223	.	+	.	ID=Os12t0539700-02;Name=Os12t0539700-02;Locus_id=Os12g0539700;Note=Conserved hypothetical protein.;Transcript_evidence=AK066376 (DDBJ%2C Best hit);ORF_evidence=NP_001172474.1 (RefSeq);NIAS_FLcDNA=J013063G10;TENOR=Os12t0539700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	21560132	21560243	.	+	.	Parent=Os12t0539700-02
Chr12	irgsp1_rep	five_prime_UTR	21560486	21560580	.	+	.	Parent=Os12t0539700-02
Chr12	irgsp1_rep	five_prime_UTR	21560888	21560984	.	+	.	Parent=Os12t0539700-02
Chr12	irgsp1_rep	five_prime_UTR	21561903	21562129	.	+	.	Parent=Os12t0539700-02
Chr12	irgsp1_rep	five_prime_UTR	21562221	21562289	.	+	.	Parent=Os12t0539700-02
Chr12	irgsp1_rep	five_prime_UTR	21562517	21562558	.	+	.	Parent=Os12t0539700-02
Chr12	irgsp1_rep	five_prime_UTR	21562653	21562748	.	+	.	Parent=Os12t0539700-02
Chr12	irgsp1_rep	five_prime_UTR	21562873	21562944	.	+	.	Parent=Os12t0539700-02
Chr12	irgsp1_rep	five_prime_UTR	21563620	21563806	.	+	.	Parent=Os12t0539700-02
Chr12	irgsp1_rep	five_prime_UTR	21563908	21564022	.	+	.	Parent=Os12t0539700-02
Chr12	irgsp1_rep	five_prime_UTR	21564103	21564460	.	+	.	Parent=Os12t0539700-02
Chr12	irgsp1_rep	five_prime_UTR	21564607	21564607	.	+	.	Parent=Os12t0539700-02
Chr12	irgsp1_rep	CDS	21564608	21564832	.	+	0	Parent=Os12t0539700-02
Chr12	irgsp1_rep	three_prime_UTR	21564833	21567223	.	+	.	Parent=Os12t0539700-02
Chr12	irgsp1_rep	mRNA	21563508	21567661	.	+	.	ID=Os12t0539700-03;Name=Os12t0539700-03;Locus_id=Os12g0539700;Note=Conserved hypothetical protein.;Transcript_evidence=AK070918 (DDBJ%2C Best hit);ORF_evidence=NP_001172474.1 (RefSeq);NIAS_FLcDNA=J023064J21;TENOR=Os12t0539700-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	21563508	21563508	.	+	.	Parent=Os12t0539700-03
Chr12	irgsp1_rep	CDS	21563509	21564519	.	+	0	Parent=Os12t0539700-03
Chr12	irgsp1_rep	three_prime_UTR	21564520	21567661	.	+	.	Parent=Os12t0539700-03
Chr12	irgsp1_rep	mRNA	21564271	21567615	.	+	.	ID=Os12t0539700-04;Name=Os12t0539700-04;Locus_id=Os12g0539700;Note=Similar to OSIGBa0135L04.2 protein.;Transcript_evidence=AK069413 (DDBJ%2C Best hit);ORF_evidence=Q01M87 (UniProt);NIAS_FLcDNA=J023016F17;TENOR=Os12t0539700-04;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	21564271	21564460	.	+	.	Parent=Os12t0539700-04
Chr12	irgsp1_rep	five_prime_UTR	21564607	21564607	.	+	.	Parent=Os12t0539700-04
Chr12	irgsp1_rep	CDS	21564608	21564832	.	+	0	Parent=Os12t0539700-04
Chr12	irgsp1_rep	three_prime_UTR	21564833	21567615	.	+	.	Parent=Os12t0539700-04
Chr12	irgsp1_rep	mRNA	21526860	21527878	.	-	.	ID=Os12t0539750-01;Name=Os12t0539750-01;Locus_id=Os12g0539750;Note=Hypothetical protein.;Transcript_evidence=AK243109 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100026G06;TENOR=Os12t0539750-01;KEGG=Os12t0539750-01
Chr12	irgsp1_rep	five_prime_UTR	21527733	21527878	.	-	.	Parent=Os12t0539750-01
Chr12	irgsp1_rep	CDS	21527361	21527732	.	-	0	Parent=Os12t0539750-01
Chr12	irgsp1_rep	three_prime_UTR	21526860	21527360	.	-	.	Parent=Os12t0539750-01
Chr12	irgsp1_rep	mRNA	21568370	21570449	.	+	.	ID=Os12t0539751-00;Name=Os12t0539751-00;Locus_id=Os12g0539751;Note=Nucleic acid-binding%2C OB-fold-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q75IQ3 (UniProt);InterPro=Nucleic acid-binding%2C OB-fold-like (IPR016027);TENOR=Os12t0539751-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	21568370	21568475	.	+	0	Parent=Os12t0539751-00
Chr12	irgsp1_rep	CDS	21568591	21568687	.	+	2	Parent=Os12t0539751-00
Chr12	irgsp1_rep	CDS	21568913	21569040	.	+	1	Parent=Os12t0539751-00
Chr12	irgsp1_rep	CDS	21569132	21569213	.	+	2	Parent=Os12t0539751-00
Chr12	irgsp1_rep	CDS	21569358	21569469	.	+	1	Parent=Os12t0539751-00
Chr12	irgsp1_rep	CDS	21569575	21569633	.	+	0	Parent=Os12t0539751-00
Chr12	irgsp1_rep	CDS	21569846	21570281	.	+	1	Parent=Os12t0539751-00
Chr12	irgsp1_rep	CDS	21570372	21570449	.	+	0	Parent=Os12t0539751-00
Chr12	irgsp1_rep	mRNA	21571604	21572838	.	-	.	ID=Os12t0539800-00;Name=Os12t0539800-00;Locus_id=Os12g0539800;Note=Hypothetical conserved gene.;Transcript_evidence=AK240858 (DDBJ%2C Secondary hit);ORF_evidence=Q2QP73 (UniProt);TENOR=Os12t0539800-00;KEGG=Os12t0539800-00
Chr12	irgsp1_rep	CDS	21572751	21572838	.	-	0	Parent=Os12t0539800-00
Chr12	irgsp1_rep	CDS	21571825	21572426	.	-	2	Parent=Os12t0539800-00
Chr12	irgsp1_rep	three_prime_UTR	21571604	21571824	.	-	.	Parent=Os12t0539800-00
Chr12	irgsp1_rep	mRNA	21574171	21576679	.	+	.	ID=Os12t0540000-01;Name=Os12t0540000-01;Locus_id=Os12g0540000;Note=Domain of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK108630 (DDBJ%2C Best hit);ORF_evidence=B9GDK0 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=002-147-F01;Expression=AK108630;TENOR=Os12t0540000-01;KEGG=Os12t0540000-01
Chr12	irgsp1_rep	five_prime_UTR	21574171	21574700	.	+	.	Parent=Os12t0540000-01
Chr12	irgsp1_rep	CDS	21574701	21575628	.	+	0	Parent=Os12t0540000-01
Chr12	irgsp1_rep	CDS	21576223	21576239	.	+	2	Parent=Os12t0540000-01
Chr12	irgsp1_rep	three_prime_UTR	21576240	21576679	.	+	.	Parent=Os12t0540000-01
Chr12	irgsp1_rep	mRNA	21577904	21581696	.	-	.	ID=Os12t0540100-01;Name=Os12t0540100-01;Locus_id=Os12g0540100;Note=Conserved hypothetical protein.;Transcript_evidence=AK241029 (DDBJ%2C Best hit);ORF_evidence=Q2QP71 (UniProt);NIAS_FLcDNA=J065058C24;TENOR=Os12t0540100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	21581535	21581696	.	-	.	Parent=Os12t0540100-01
Chr12	irgsp1_rep	five_prime_UTR	21581239	21581440	.	-	.	Parent=Os12t0540100-01
Chr12	irgsp1_rep	five_prime_UTR	21580795	21581052	.	-	.	Parent=Os12t0540100-01
Chr12	irgsp1_rep	CDS	21580210	21580794	.	-	0	Parent=Os12t0540100-01
Chr12	irgsp1_rep	CDS	21579506	21579621	.	-	0	Parent=Os12t0540100-01
Chr12	irgsp1_rep	CDS	21579391	21579426	.	-	1	Parent=Os12t0540100-01
Chr12	irgsp1_rep	CDS	21578552	21578603	.	-	1	Parent=Os12t0540100-01
Chr12	irgsp1_rep	three_prime_UTR	21578532	21578551	.	-	.	Parent=Os12t0540100-01
Chr12	irgsp1_rep	three_prime_UTR	21578350	21578467	.	-	.	Parent=Os12t0540100-01
Chr12	irgsp1_rep	three_prime_UTR	21577904	21578260	.	-	.	Parent=Os12t0540100-01
Chr12	irgsp1_rep	mRNA	21594019	21596993	.	+	.	ID=Os12t0540200-01;Name=Os12t0540200-01;Locus_id=Os12g0540200;Note=Hypothetical gene.;Transcript_evidence=AK065534 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013027H05;Expression=AK065534;TENOR=Os12t0540200-01;KEGG=Os12t0540200-01
Chr12	irgsp1_rep	five_prime_UTR	21594019	21594147	.	+	.	Parent=Os12t0540200-01
Chr12	irgsp1_rep	five_prime_UTR	21594316	21594356	.	+	.	Parent=Os12t0540200-01
Chr12	irgsp1_rep	five_prime_UTR	21594407	21594489	.	+	.	Parent=Os12t0540200-01
Chr12	irgsp1_rep	five_prime_UTR	21595073	21595153	.	+	.	Parent=Os12t0540200-01
Chr12	irgsp1_rep	five_prime_UTR	21595785	21596723	.	+	.	Parent=Os12t0540200-01
Chr12	irgsp1_rep	CDS	21596724	21596993	.	+	0	Parent=Os12t0540200-01
Chr12	irgsp1_rep	mRNA	21614879	21617352	.	+	.	ID=Os12t0540700-01;Name=Os12t0540700-01;Locus_id=Os12g0540700;Note=Conserved hypothetical protein.;Transcript_evidence=AK107996 (DDBJ%2C Best hit);ORF_evidence=Q2QP64 (UniProt);NIAS_FLcDNA=002-135-G01;TENOR=Os12t0540700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	21614879	21615017	.	+	0	Parent=Os12t0540700-01
Chr12	irgsp1_rep	CDS	21616322	21616449	.	+	2	Parent=Os12t0540700-01
Chr12	irgsp1_rep	CDS	21616849	21617133	.	+	0	Parent=Os12t0540700-01
Chr12	irgsp1_rep	three_prime_UTR	21617134	21617352	.	+	.	Parent=Os12t0540700-01
Chr12	irgsp1_rep	mRNA	21619517	21624945	.	+	.	ID=Os12t0540800-01;Name=Os12t0540800-01;Locus_id=Os12g0540800;Note=Galactose oxidase/kelch%2C beta-propeller domain containing protein.;Transcript_evidence=AK100499 (DDBJ%2C Best hit);ORF_evidence=NP_001152073.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=Kelch repeat type 2 (IPR011498),Kelch-type beta propeller (IPR015915);NIAS_FLcDNA=J023099E22;Expression=AK100499;TENOR=Os12t0540800-01;KEGG=Os12t0540800-01
Chr12	irgsp1_rep	five_prime_UTR	21619517	21619786	.	+	.	Parent=Os12t0540800-01
Chr12	irgsp1_rep	CDS	21619787	21619792	.	+	0	Parent=Os12t0540800-01
Chr12	irgsp1_rep	CDS	21620278	21620463	.	+	0	Parent=Os12t0540800-01
Chr12	irgsp1_rep	CDS	21620567	21620644	.	+	0	Parent=Os12t0540800-01
Chr12	irgsp1_rep	CDS	21620832	21620945	.	+	0	Parent=Os12t0540800-01
Chr12	irgsp1_rep	CDS	21621050	21621116	.	+	0	Parent=Os12t0540800-01
Chr12	irgsp1_rep	CDS	21621205	21621266	.	+	2	Parent=Os12t0540800-01
Chr12	irgsp1_rep	CDS	21621374	21621513	.	+	0	Parent=Os12t0540800-01
Chr12	irgsp1_rep	CDS	21621803	21621929	.	+	1	Parent=Os12t0540800-01
Chr12	irgsp1_rep	CDS	21622009	21622123	.	+	0	Parent=Os12t0540800-01
Chr12	irgsp1_rep	CDS	21622362	21622450	.	+	2	Parent=Os12t0540800-01
Chr12	irgsp1_rep	CDS	21622688	21622769	.	+	0	Parent=Os12t0540800-01
Chr12	irgsp1_rep	CDS	21622842	21622984	.	+	2	Parent=Os12t0540800-01
Chr12	irgsp1_rep	CDS	21623318	21623471	.	+	0	Parent=Os12t0540800-01
Chr12	irgsp1_rep	CDS	21623904	21623965	.	+	2	Parent=Os12t0540800-01
Chr12	irgsp1_rep	CDS	21624536	21624694	.	+	0	Parent=Os12t0540800-01
Chr12	irgsp1_rep	three_prime_UTR	21624695	21624945	.	+	.	Parent=Os12t0540800-01
Chr12	irgsp1_rep	mRNA	21623321	21624945	.	+	.	ID=Os12t0540800-02;Name=Os12t0540800-02;Locus_id=Os12g0540800;Note=Hypothetical conserved gene.;Transcript_evidence=AK062200 (DDBJ%2C Best hit);ORF_evidence=B9GDK2 (UniProt);NIAS_FLcDNA=001-046-G06;Expression=AK062200;TENOR=Os12t0540800-02;KEGG=Os12t0540800-02
Chr12	irgsp1_rep	CDS	21623321	21623471	.	+	0	Parent=Os12t0540800-02
Chr12	irgsp1_rep	CDS	21623904	21623965	.	+	2	Parent=Os12t0540800-02
Chr12	irgsp1_rep	CDS	21624536	21624694	.	+	0	Parent=Os12t0540800-02
Chr12	irgsp1_rep	three_prime_UTR	21624695	21624945	.	+	.	Parent=Os12t0540800-02
Chr12	irgsp1_rep	mRNA	21625455	21629669	.	-	.	ID=Os12t0540900-01;Name=Os12t0540900-01;Locus_id=Os12g0540900;Oryzabase Gene Name Synonym(s)=Eukatyotic release factor;Note=Similar to Tryptophanyl-tRNA synthetase (EC 6.1.1.2) (Tryptophan--tRNA ligase) (TrpRS).;Transcript_evidence=AK102417 (DDBJ%2C Best hit),AK060440 (DDBJ%2C Best hit);ORF_evidence=B6T773 (UniProt);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: tryptophanyl-tRNA aminoacylation (GO:0006436),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: tryptophan-tRNA ligase activity (GO:0004830),Molecular Function: ATP binding (GO:0005524);InterPro=Aminoacyl-tRNA synthetase%2C class I%2C conserved site (IPR001412),Aminoacyl-tRNA synthetase%2C class Ic (IPR002305),Tryptophanyl-tRNA synthetase (IPR002306),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J033093C09,001-011-D11;Oryzabase=15724;TENOR=Os12t0540900-01
Chr12	irgsp1_rep	five_prime_UTR	21629549	21629669	.	-	.	Parent=Os12t0540900-01
Chr12	irgsp1_rep	CDS	21629310	21629548	.	-	0	Parent=Os12t0540900-01
Chr12	irgsp1_rep	CDS	21629081	21629200	.	-	1	Parent=Os12t0540900-01
Chr12	irgsp1_rep	CDS	21628284	21628469	.	-	1	Parent=Os12t0540900-01
Chr12	irgsp1_rep	CDS	21628097	21628148	.	-	1	Parent=Os12t0540900-01
Chr12	irgsp1_rep	CDS	21627832	21627984	.	-	0	Parent=Os12t0540900-01
Chr12	irgsp1_rep	CDS	21627507	21627599	.	-	0	Parent=Os12t0540900-01
Chr12	irgsp1_rep	CDS	21626920	21627000	.	-	0	Parent=Os12t0540900-01
Chr12	irgsp1_rep	CDS	21626693	21626764	.	-	0	Parent=Os12t0540900-01
Chr12	irgsp1_rep	CDS	21626222	21626290	.	-	0	Parent=Os12t0540900-01
Chr12	irgsp1_rep	CDS	21626001	21626111	.	-	0	Parent=Os12t0540900-01
Chr12	irgsp1_rep	CDS	21625748	21625798	.	-	0	Parent=Os12t0540900-01
Chr12	irgsp1_rep	three_prime_UTR	21625455	21625747	.	-	.	Parent=Os12t0540900-01
Chr12	irgsp1_rep	mRNA	21625457	21629511	.	-	.	ID=Os12t0540900-02;Name=Os12t0540900-02;Locus_id=Os12g0540900;Oryzabase Gene Name Synonym(s)=Eukatyotic release factor;Note=Similar to tryptophanyl-tRNA synthetase.;Transcript_evidence=AK072304 (DDBJ%2C Best hit);ORF_evidence=B6T773 (UniProt);GO=Biological Process: tRNA aminoacylation for protein translation (GO:0006418),Biological Process: tryptophanyl-tRNA aminoacylation (GO:0006436),Cellular Component: cytoplasm (GO:0005737),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812),Molecular Function: tryptophan-tRNA ligase activity (GO:0004830),Molecular Function: ATP binding (GO:0005524);InterPro=Aminoacyl-tRNA synthetase%2C class I%2C conserved site (IPR001412),Aminoacyl-tRNA synthetase%2C class Ic (IPR002305),Tryptophanyl-tRNA synthetase (IPR002306),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J023020M09;Oryzabase=15724;Expression=AK072304;TENOR=Os12t0540900-02;KEGG=Os12t0540900-02 (EC:6.1.1.2)
Chr12	irgsp1_rep	five_prime_UTR	21629510	21629511	.	-	.	Parent=Os12t0540900-02
Chr12	irgsp1_rep	CDS	21629310	21629509	.	-	0	Parent=Os12t0540900-02
Chr12	irgsp1_rep	CDS	21629081	21629200	.	-	1	Parent=Os12t0540900-02
Chr12	irgsp1_rep	CDS	21628284	21628469	.	-	1	Parent=Os12t0540900-02
Chr12	irgsp1_rep	CDS	21628097	21628148	.	-	1	Parent=Os12t0540900-02
Chr12	irgsp1_rep	CDS	21627832	21627984	.	-	0	Parent=Os12t0540900-02
Chr12	irgsp1_rep	CDS	21627507	21627599	.	-	0	Parent=Os12t0540900-02
Chr12	irgsp1_rep	CDS	21626818	21627000	.	-	0	Parent=Os12t0540900-02
Chr12	irgsp1_rep	three_prime_UTR	21626693	21626817	.	-	.	Parent=Os12t0540900-02
Chr12	irgsp1_rep	three_prime_UTR	21626222	21626290	.	-	.	Parent=Os12t0540900-02
Chr12	irgsp1_rep	three_prime_UTR	21626001	21626111	.	-	.	Parent=Os12t0540900-02
Chr12	irgsp1_rep	three_prime_UTR	21625457	21625798	.	-	.	Parent=Os12t0540900-02
Chr12	irgsp1_rep	mRNA	21637135	21639084	.	+	.	ID=Os12t0541000-01;Name=Os12t0541000-01;Locus_id=Os12g0541000;Note=Lumazine-binding protein family protein.;Transcript_evidence=AK243490 (DDBJ%2C Best hit);ORF_evidence=NP_001150852.1 (RefSeq);GO=Biological Process: riboflavin biosynthetic process (GO:0009231),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: riboflavin synthase activity (GO:0004746),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Lumazine-binding protein (IPR001783),Riboflavin synthase-like beta-barrel (IPR017938),ATPase%2C F1/A1 complex%2C alpha subunit%2C N-terminal (IPR023366);NIAS_FLcDNA=J100073N23;TENOR=Os12t0541000-01;KEGG=Os12t0541000-01 (EC:2.5.1.9)
Chr12	irgsp1_rep	five_prime_UTR	21637135	21637191	.	+	.	Parent=Os12t0541000-01
Chr12	irgsp1_rep	CDS	21637192	21638085	.	+	0	Parent=Os12t0541000-01
Chr12	irgsp1_rep	CDS	21638814	21638834	.	+	0	Parent=Os12t0541000-01
Chr12	irgsp1_rep	three_prime_UTR	21638835	21639084	.	+	.	Parent=Os12t0541000-01
Chr12	irgsp1_rep	mRNA	21640425	21641469	.	-	.	ID=Os12t0541200-01;Name=Os12t0541200-01;Locus_id=Os12g0541200;Note=Conserved hypothetical protein.;Transcript_evidence=AK061361 (DDBJ%2C Best hit);ORF_evidence=B8BMC1 (UniProt);NIAS_FLcDNA=006-304-B12;TENOR=Os12t0541200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	21641124	21641469	.	-	.	Parent=Os12t0541200-01
Chr12	irgsp1_rep	CDS	21640797	21641123	.	-	0	Parent=Os12t0541200-01
Chr12	irgsp1_rep	three_prime_UTR	21640425	21640796	.	-	.	Parent=Os12t0541200-01
Chr12	irgsp1_rep	mRNA	21640425	21641429	.	-	.	ID=Os12t0541200-02;Name=Os12t0541200-02;Locus_id=Os12g0541200;Note=Conserved hypothetical protein.;Transcript_evidence=AK103354 (DDBJ%2C Best hit);ORF_evidence=B8BMC1 (UniProt);NIAS_FLcDNA=J033126J24;TENOR=Os12t0541200-02
Chr12	irgsp1_rep	five_prime_UTR	21641124	21641429	.	-	.	Parent=Os12t0541200-02
Chr12	irgsp1_rep	CDS	21640797	21641123	.	-	0	Parent=Os12t0541200-02
Chr12	irgsp1_rep	three_prime_UTR	21640425	21640796	.	-	.	Parent=Os12t0541200-02
Chr12	irgsp1_rep	mRNA	21640953	21641720	.	+	.	ID=Os12t0541250-01;Name=Os12t0541250-01;Locus_id=Os12g0541250;Note=Hypothetical gene.;Transcript_evidence=AK105215 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-109-G07;Expression=AK105215;TENOR=Os12t0541250-01;KEGG=Os12t0541250-01
Chr12	irgsp1_rep	five_prime_UTR	21640953	21640953	.	+	.	Parent=Os12t0541250-01
Chr12	irgsp1_rep	CDS	21640954	21641502	.	+	0	Parent=Os12t0541250-01
Chr12	irgsp1_rep	three_prime_UTR	21641503	21641720	.	+	.	Parent=Os12t0541250-01
Chr12	irgsp1_rep	mRNA	21648123	21653555	.	+	.	ID=Os12t0541300-01;Name=Os12t0541300-01;Locus_id=Os12g0541300;RAP-DB Gene Symbol Synonym(s)=RBOHH;RAP-DB Gene Name Synonym(s)=RESPIRATORY BURST OXIDASE HOMOLOG H%2C respiratory burst oxidase homolog H;CGSNL Gene Symbol=RBOHH;CGSNL Gene Name=RESPIRATORY BURST OXIDASE HOMOLOG H;Oryzabase Gene Symbol Synonym(s)=rbohH%2C OsrbohH%2C Os rbohH%2C OsNox9%2C OsRboh9%2C Os-RbohH%2C RbohH;Oryzabase Gene Name Synonym(s)=Respiratory Burst Oxidase Homolog H%2C NADPH oxidase 9;Note=NADPH oxidase%2C Respiratory burst oxidase homolog%2C Ethylene-induced aerenchyma formation in roots under oxygen-deficient conditions;Transcript_evidence=AK318553;ORF_evidence=Q2QP56;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: peroxidase activity (GO:0004601),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: oxidoreductase activity%2C acting on NAD(P)H%2C oxygen as acceptor (GO:0050664),Cellular Component: membrane (GO:0016020);InterPro=CytoChrome b245%2C heavy chain (IPR000778),NADPH oxidase Respiratory burst (IPR013623),EF-hand domain pair (IPR011992),EF-hand domain (IPR002048),Ferric reductase transmembrane component-like domain (IPR013130),Riboflavin synthase-like beta-barrel (IPR017938),Ferredoxin reductase-type FAD-binding domain (IPR017927),FAD-binding 8 (IPR013112),Ferric reductase%2C NAD binding domain (IPR013121),EF-Hand 1%2C calcium-binding site (IPR018247);NIAS_FLcDNA=J075145A22;Manual Curation=May 23%2C 2017;Literature_PMID=28351990;Oryzabase=10489;TENOR=Os12t0541300-01;KEGG=Os12t0541300-01 (EC:1.6.3.- 1.11.1.-)
Chr12	irgsp1_rep	five_prime_UTR	21648123	21648213	.	+	.	Parent=Os12t0541300-01
Chr12	irgsp1_rep	five_prime_UTR	21648439	21648515	.	+	.	Parent=Os12t0541300-01
Chr12	irgsp1_rep	five_prime_UTR	21648627	21648636	.	+	.	Parent=Os12t0541300-01
Chr12	irgsp1_rep	CDS	21648637	21649195	.	+	0	Parent=Os12t0541300-01
Chr12	irgsp1_rep	CDS	21649293	21649452	.	+	2	Parent=Os12t0541300-01
Chr12	irgsp1_rep	CDS	21649670	21649718	.	+	1	Parent=Os12t0541300-01
Chr12	irgsp1_rep	CDS	21649821	21649934	.	+	0	Parent=Os12t0541300-01
Chr12	irgsp1_rep	CDS	21650114	21650545	.	+	0	Parent=Os12t0541300-01
Chr12	irgsp1_rep	CDS	21650845	21651231	.	+	0	Parent=Os12t0541300-01
Chr12	irgsp1_rep	CDS	21651325	21651423	.	+	0	Parent=Os12t0541300-01
Chr12	irgsp1_rep	CDS	21651631	21651746	.	+	0	Parent=Os12t0541300-01
Chr12	irgsp1_rep	CDS	21651856	21651955	.	+	1	Parent=Os12t0541300-01
Chr12	irgsp1_rep	CDS	21652065	21652141	.	+	0	Parent=Os12t0541300-01
Chr12	irgsp1_rep	CDS	21652638	21653274	.	+	1	Parent=Os12t0541300-01
Chr12	irgsp1_rep	three_prime_UTR	21653275	21653555	.	+	.	Parent=Os12t0541300-01
Chr12	irgsp1_rep	mRNA	21648740	21653279	.	-	.	ID=Os12t0541350-00;Name=Os12t0541350-00;Locus_id=Os12g0541350;Note=Hypothetical protein.;Transcript_evidence=tplb0025i04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0541350-00
Chr12	irgsp1_rep	five_prime_UTR	21653278	21653279	.	-	.	Parent=Os12t0541350-00
Chr12	irgsp1_rep	CDS	21652720	21653277	.	-	0	Parent=Os12t0541350-00
Chr12	irgsp1_rep	three_prime_UTR	21652615	21652719	.	-	.	Parent=Os12t0541350-00
Chr12	irgsp1_rep	three_prime_UTR	21651827	21652012	.	-	.	Parent=Os12t0541350-00
Chr12	irgsp1_rep	three_prime_UTR	21651625	21651719	.	-	.	Parent=Os12t0541350-00
Chr12	irgsp1_rep	three_prime_UTR	21650840	21651305	.	-	.	Parent=Os12t0541350-00
Chr12	irgsp1_rep	three_prime_UTR	21650123	21650551	.	-	.	Parent=Os12t0541350-00
Chr12	irgsp1_rep	three_prime_UTR	21649825	21649943	.	-	.	Parent=Os12t0541350-00
Chr12	irgsp1_rep	three_prime_UTR	21649265	21649506	.	-	.	Parent=Os12t0541350-00
Chr12	irgsp1_rep	three_prime_UTR	21649024	21649172	.	-	.	Parent=Os12t0541350-00
Chr12	irgsp1_rep	three_prime_UTR	21648740	21648846	.	-	.	Parent=Os12t0541350-00
Chr12	irgsp1_rep	mRNA	21654943	21659030	.	+	.	ID=Os12t0541400-01;Name=Os12t0541400-01;Locus_id=Os12g0541400;Note=Conserved hypothetical protein.;Transcript_evidence=AK059886 (DDBJ%2C Best hit);ORF_evidence=A2ZLC0 (UniProt);NIAS_FLcDNA=006-208-B06;TENOR=Os12t0541400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	21654943	21655073	.	+	.	Parent=Os12t0541400-01
Chr12	irgsp1_rep	CDS	21655074	21655184	.	+	0	Parent=Os12t0541400-01
Chr12	irgsp1_rep	CDS	21655294	21655332	.	+	0	Parent=Os12t0541400-01
Chr12	irgsp1_rep	CDS	21656539	21656592	.	+	0	Parent=Os12t0541400-01
Chr12	irgsp1_rep	CDS	21657023	21657076	.	+	0	Parent=Os12t0541400-01
Chr12	irgsp1_rep	CDS	21657795	21657848	.	+	0	Parent=Os12t0541400-01
Chr12	irgsp1_rep	CDS	21657945	21658016	.	+	0	Parent=Os12t0541400-01
Chr12	irgsp1_rep	CDS	21658111	21658200	.	+	0	Parent=Os12t0541400-01
Chr12	irgsp1_rep	CDS	21658383	21658439	.	+	0	Parent=Os12t0541400-01
Chr12	irgsp1_rep	CDS	21658700	21658765	.	+	0	Parent=Os12t0541400-01
Chr12	irgsp1_rep	three_prime_UTR	21658766	21659030	.	+	.	Parent=Os12t0541400-01
Chr12	irgsp1_rep	mRNA	21655012	21659199	.	+	.	ID=Os12t0541400-02;Name=Os12t0541400-02;Locus_id=Os12g0541400;Note=Conserved hypothetical protein.;Transcript_evidence=AK101210 (DDBJ%2C Best hit);ORF_evidence=Q2QP55 (UniProt);NIAS_FLcDNA=J033031A17;TENOR=Os12t0541400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	21655012	21655073	.	+	.	Parent=Os12t0541400-02
Chr12	irgsp1_rep	CDS	21655074	21655184	.	+	0	Parent=Os12t0541400-02
Chr12	irgsp1_rep	CDS	21655294	21655332	.	+	0	Parent=Os12t0541400-02
Chr12	irgsp1_rep	CDS	21656539	21656592	.	+	0	Parent=Os12t0541400-02
Chr12	irgsp1_rep	CDS	21657023	21657076	.	+	0	Parent=Os12t0541400-02
Chr12	irgsp1_rep	CDS	21657795	21657848	.	+	0	Parent=Os12t0541400-02
Chr12	irgsp1_rep	CDS	21657945	21658016	.	+	0	Parent=Os12t0541400-02
Chr12	irgsp1_rep	CDS	21658111	21658200	.	+	0	Parent=Os12t0541400-02
Chr12	irgsp1_rep	CDS	21658383	21658439	.	+	0	Parent=Os12t0541400-02
Chr12	irgsp1_rep	CDS	21658700	21658765	.	+	0	Parent=Os12t0541400-02
Chr12	irgsp1_rep	three_prime_UTR	21658766	21659199	.	+	.	Parent=Os12t0541400-02
Chr12	irgsp1_rep	mRNA	21660665	21663938	.	+	.	ID=Os12t0541500-01;Name=Os12t0541500-01;Locus_id=Os12g0541500;Note=Similar to Elongation factor Ts.;Transcript_evidence=AK069200 (DDBJ%2C Best hit),AK065699 (DDBJ%2C Best hit);ORF_evidence=A2ZLC1 (UniProt);GO=Biological Process: translational elongation (GO:0006414),Cellular Component: intracellular (GO:0005622),Molecular Function: RNA binding (GO:0003723),Molecular Function: translation elongation factor activity (GO:0003746);InterPro=Translation elongation factor EFTs/EF1B (IPR001816),Ribosomal protein S1%2C RNA-binding domain (IPR003029),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),RNA-binding domain%2C S1 (IPR022967);NIAS_FLcDNA=J023009A08,J013037H04;TENOR=Os12t0541500-01
Chr12	irgsp1_rep	five_prime_UTR	21660665	21660859	.	+	.	Parent=Os12t0541500-01
Chr12	irgsp1_rep	five_prime_UTR	21661582	21661641	.	+	.	Parent=Os12t0541500-01
Chr12	irgsp1_rep	CDS	21661642	21663705	.	+	0	Parent=Os12t0541500-01
Chr12	irgsp1_rep	three_prime_UTR	21663706	21663938	.	+	.	Parent=Os12t0541500-01
Chr12	irgsp1_rep	mRNA	21660671	21666265	.	+	.	ID=Os12t0541500-02;Name=Os12t0541500-02;Locus_id=Os12g0541500;Note=Similar to Chloroplast polyprotein of elongation factor Ts.;Transcript_evidence=AK067367 (DDBJ%2C Best hit);ORF_evidence=A2ZLC1 (UniProt);GO=Biological Process: translational elongation (GO:0006414),Cellular Component: intracellular (GO:0005622),Molecular Function: RNA binding (GO:0003723),Molecular Function: translation elongation factor activity (GO:0003746),Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal (IPR000449),Translation elongation factor EFTs/EF1B (IPR001816),Ribosomal protein S1%2C RNA-binding domain (IPR003029),UBA-like (IPR009060),Nucleic acid-binding%2C OB-fold (IPR012340),Translation elongation factor EFTs/EF1B%2C dimerisation (IPR014039),Nucleic acid-binding%2C OB-fold-like (IPR016027),Translation elongation factor Ts%2C conserved site (IPR018101),RNA-binding domain%2C S1 (IPR022967);NIAS_FLcDNA=J013106B18;Expression=AK067367;TENOR=Os12t0541500-02;KEGG=Os12t0541500-02
Chr12	irgsp1_rep	five_prime_UTR	21660671	21660859	.	+	.	Parent=Os12t0541500-02
Chr12	irgsp1_rep	five_prime_UTR	21661582	21661641	.	+	.	Parent=Os12t0541500-02
Chr12	irgsp1_rep	CDS	21661642	21663694	.	+	0	Parent=Os12t0541500-02
Chr12	irgsp1_rep	CDS	21664570	21665281	.	+	2	Parent=Os12t0541500-02
Chr12	irgsp1_rep	CDS	21665420	21666026	.	+	1	Parent=Os12t0541500-02
Chr12	irgsp1_rep	three_prime_UTR	21666027	21666265	.	+	.	Parent=Os12t0541500-02
Chr12	irgsp1_rep	mRNA	21662157	21663956	.	+	.	ID=Os12t0541500-03;Name=Os12t0541500-03;Locus_id=Os12g0541500;Note=Similar to Elongation factor Ts.;Transcript_evidence=AK062564 (DDBJ%2C Best hit);ORF_evidence=A2ZLC1 (UniProt);GO=Biological Process: translational elongation (GO:0006414),Cellular Component: intracellular (GO:0005622),Molecular Function: RNA binding (GO:0003723),Molecular Function: translation elongation factor activity (GO:0003746);InterPro=Translation elongation factor EFTs/EF1B (IPR001816),Ribosomal protein S1%2C RNA-binding domain (IPR003029),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),RNA-binding domain%2C S1 (IPR022967);NIAS_FLcDNA=001-045-F04;Expression=AK062564;TENOR=Os12t0541500-03;KEGG=Os12t0541500-03
Chr12	irgsp1_rep	five_prime_UTR	21662157	21662157	.	+	.	Parent=Os12t0541500-03
Chr12	irgsp1_rep	CDS	21662158	21663705	.	+	0	Parent=Os12t0541500-03
Chr12	irgsp1_rep	three_prime_UTR	21663706	21663956	.	+	.	Parent=Os12t0541500-03
Chr12	irgsp1_rep	mRNA	21664760	21666265	.	+	.	ID=Os12t0541500-04;Name=Os12t0541500-04;Locus_id=Os12g0541500;Note=Similar to Elongation factor Ts.;Transcript_evidence=AK119540 (DDBJ%2C Best hit);ORF_evidence=A2ZLC1 (UniProt);GO=Biological Process: translational elongation (GO:0006414),Cellular Component: intracellular (GO:0005622),Molecular Function: translation elongation factor activity (GO:0003746),Molecular Function: protein binding (GO:0005515);InterPro=Ubiquitin-associated/translation elongation factor EF1B%2C N-terminal (IPR000449),Translation elongation factor EFTs/EF1B (IPR001816),UBA-like (IPR009060),Translation elongation factor EFTs/EF1B%2C dimerisation (IPR014039),Translation elongation factor Ts%2C conserved site (IPR018101);NIAS_FLcDNA=001-204-C06;Expression=AK119540;TENOR=Os12t0541500-04;KEGG=Os12t0541500-04
Chr12	irgsp1_rep	five_prime_UTR	21664760	21664760	.	+	.	Parent=Os12t0541500-04
Chr12	irgsp1_rep	CDS	21664761	21665281	.	+	0	Parent=Os12t0541500-04
Chr12	irgsp1_rep	CDS	21665420	21666026	.	+	1	Parent=Os12t0541500-04
Chr12	irgsp1_rep	three_prime_UTR	21666027	21666265	.	+	.	Parent=Os12t0541500-04
Chr12	irgsp1_rep	mRNA	21665862	21666265	.	+	.	ID=Os12t0541500-05;Name=Os12t0541500-05;Locus_id=Os12g0541500;Note=Similar to Elongation factor Ts.;Transcript_evidence=AK062059 (DDBJ%2C Best hit);ORF_evidence=A2ZLC1 (UniProt);GO=Biological Process: translational elongation (GO:0006414),Cellular Component: intracellular (GO:0005622),Molecular Function: translation elongation factor activity (GO:0003746);InterPro=Translation elongation factor EFTs/EF1B (IPR001816),Translation elongation factor EFTs/EF1B%2C dimerisation (IPR014039);NIAS_FLcDNA=001-044-C08;Expression=AK062059;TENOR=Os12t0541500-05;KEGG=Os12t0541500-05
Chr12	irgsp1_rep	CDS	21665862	21666026	.	+	0	Parent=Os12t0541500-05
Chr12	irgsp1_rep	three_prime_UTR	21666027	21666265	.	+	.	Parent=Os12t0541500-05
Chr12	irgsp1_rep	mRNA	21666234	21666802	.	-	.	ID=Os12t0541600-01;Name=Os12t0541600-01;Locus_id=Os12g0541600;Note=Non-protein coding transcript.;Transcript_evidence=AK058334 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-014-C12;TENOR=Os12t0541600-01
Chr12	irgsp1_rep	exon	21666234	21666802	.	-	.	Parent=Os12t0541600-01
Chr12	irgsp1_rep	mRNA	21691749	21692645	.	+	.	ID=Os12t0541700-01;Name=Os12t0541700-01;Locus_id=Os12g0541700;CGSNL Gene Symbol=RALF37;CGSNL Gene Name=RAPID ALKALIZATION FACTOR 37;Oryzabase Gene Symbol Synonym(s)=OsRALF-37%2C OsRALF37%2C RALF-37;Oryzabase Gene Name Synonym(s)=Rapid alkalization factor 37;Note=Similar to Rapid alkalinization factor 2.;Transcript_evidence=AK103420 (DDBJ%2C Best hit);ORF_evidence=NP_001147163.1 (RefSeq);InterPro=Rapid ALkalinization Factor (IPR008801);NIAS_FLcDNA=J033128J23;Oryzabase=21138;Expression=AK103420;TENOR=Os12t0541700-01;KEGG=Os12t0541700-01
Chr12	irgsp1_rep	five_prime_UTR	21691749	21691913	.	+	.	Parent=Os12t0541700-01
Chr12	irgsp1_rep	CDS	21691914	21692297	.	+	0	Parent=Os12t0541700-01
Chr12	irgsp1_rep	three_prime_UTR	21692298	21692645	.	+	.	Parent=Os12t0541700-01
Chr12	irgsp1_rep	mRNA	21700002	21700997	.	+	.	ID=Os12t0542000-01;Name=Os12t0542000-01;Locus_id=Os12g0542000;CGSNL Gene Symbol=RALF38;CGSNL Gene Name=RAPID ALKALIZATION FACTOR 38;Oryzabase Gene Symbol Synonym(s)=OsRALF-38%2C OsRALF38%2C RALF-38;Oryzabase Gene Name Synonym(s)=Rapid alkalization factor 38;Note=Rapid ALkalinization Factor family protein.;Transcript_evidence=AK069047 (DDBJ%2C Best hit),AK071210 (DDBJ%2C Best hit);ORF_evidence=NP_001147163.1 (RefSeq);InterPro=Rapid ALkalinization Factor (IPR008801);NIAS_FLcDNA=J023009C11,J023085L01;Oryzabase=21139;Expression=AK069047;TENOR=Os12t0542000-01;KEGG=Os12t0542000-01
Chr12	irgsp1_rep	five_prime_UTR	21700002	21700062	.	+	.	Parent=Os12t0542000-01
Chr12	irgsp1_rep	CDS	21700063	21700461	.	+	0	Parent=Os12t0542000-01
Chr12	irgsp1_rep	three_prime_UTR	21700462	21700997	.	+	.	Parent=Os12t0542000-01
Chr12	irgsp1_rep	mRNA	21711496	21713941	.	-	.	ID=Os12t0542200-00;Name=Os12t0542200-00;Locus_id=Os12g0542200;Note=Conserved hypothetical protein.;Transcript_evidence=AK360632 (DDBJ);ORF_evidence=NP_001066960.1 (RefSeq);TENOR=Os12t0542200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	21713750	21713941	.	-	0	Parent=Os12t0542200-00
Chr12	irgsp1_rep	CDS	21711496	21713694	.	-	0	Parent=Os12t0542200-00
Chr12	irgsp1_rep	mRNA	21766760	21767380	.	+	.	ID=Os12t0542300-00;Name=Os12t0542300-00;Locus_id=Os12g0542300;Note=Conserved hypothetical protein.;Transcript_evidence=EU950151 (DDBJ);ORF_evidence=Q7Y0D8 (UniProt);TENOR=Os12t0542300-00
Chr12	irgsp1_rep	CDS	21766760	21767209	.	+	0	Parent=Os12t0542300-00
Chr12	irgsp1_rep	three_prime_UTR	21767210	21767380	.	+	.	Parent=Os12t0542300-00
Chr12	irgsp1_rep	mRNA	21783684	21786014	.	-	.	ID=Os12t0542601-01;Name=Os12t0542601-01;Locus_id=Os12g0542601;Note=Conserved hypothetical protein.;Transcript_evidence=AK289053 (DDBJ%2C Best hit);ORF_evidence=Q75LF4 (UniProt);NIAS_FLcDNA=J090092P21;TENOR=Os12t0542601-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	21785401	21786014	.	-	.	Parent=Os12t0542601-01
Chr12	irgsp1_rep	CDS	21785188	21785400	.	-	0	Parent=Os12t0542601-01
Chr12	irgsp1_rep	three_prime_UTR	21783684	21785187	.	-	.	Parent=Os12t0542601-01
Chr12	irgsp1_rep	mRNA	21834536	21835553	.	-	.	ID=Os12t0543101-01;Name=Os12t0543101-01;Locus_id=Os12g0543101;Note=Non-protein coding transcript.;Transcript_evidence=AK288407 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090030H21;TENOR=Os12t0543101-01
Chr12	irgsp1_rep	exon	21834536	21835553	.	-	.	Parent=Os12t0543101-01
Chr12	irgsp1_rep	mRNA	21869758	21871498	.	+	.	ID=Os12t0543600-00;Name=Os12t0543600-00;Locus_id=Os12g0543600;Note=Similar to sarcosine oxidase.;Transcript_evidence=tplb0003o15 (Wheat FLcDNA);ORF_evidence=B6TIK6 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FAD dependent oxidoreductase (IPR006076);TENOR=Os12t0543600-00;KEGG=Os12t0543600-00
Chr12	irgsp1_rep	five_prime_UTR	21869758	21869770	.	+	.	Parent=Os12t0543600-00
Chr12	irgsp1_rep	CDS	21869771	21870344	.	+	0	Parent=Os12t0543600-00
Chr12	irgsp1_rep	CDS	21870725	21871413	.	+	2	Parent=Os12t0543600-00
Chr12	irgsp1_rep	three_prime_UTR	21871414	21871498	.	+	.	Parent=Os12t0543600-00
Chr12	irgsp1_rep	mRNA	21869759	21871355	.	-	.	ID=Os12t0543650-00;Name=Os12t0543650-00;Locus_id=Os12g0543650;Note=Hypothetical gene.;Transcript_evidence=EU948769 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0543650-00;KEGG=Os12t0543650-00
Chr12	irgsp1_rep	five_prime_UTR	21871249	21871355	.	-	.	Parent=Os12t0543650-00
Chr12	irgsp1_rep	CDS	21870722	21871248	.	-	0	Parent=Os12t0543650-00
Chr12	irgsp1_rep	CDS	21870049	21870340	.	-	1	Parent=Os12t0543650-00
Chr12	irgsp1_rep	three_prime_UTR	21869759	21870048	.	-	.	Parent=Os12t0543650-00
Chr12	irgsp1_rep	mRNA	21873069	21877362	.	+	.	ID=Os12t0543701-01;Name=Os12t0543701-01;Locus_id=Os12g0543701;Note=Hypothetical conserved gene.;Transcript_evidence=AK288343 (DDBJ%2C Best hit);ORF_evidence=NP_001066961.2 (RefSeq);NIAS_FLcDNA=J090023K08;TENOR=Os12t0543701-01;KEGG=Os12t0543701-01
Chr12	irgsp1_rep	five_prime_UTR	21873069	21875212	.	+	.	Parent=Os12t0543701-01
Chr12	irgsp1_rep	CDS	21875213	21875638	.	+	0	Parent=Os12t0543701-01
Chr12	irgsp1_rep	three_prime_UTR	21875639	21877362	.	+	.	Parent=Os12t0543701-01
Chr12	irgsp1_rep	mRNA	21879850	21880385	.	+	.	ID=Os12t0543751-00;Name=Os12t0543751-00;Locus_id=Os12g0543751;Note=Conserved hypothetical protein.;Transcript_evidence=EU947692 (DDBJ);ORF_evidence=Q2QVI6 (UniProt);TENOR=Os12t0543751-00
Chr12	irgsp1_rep	five_prime_UTR	21879850	21879976	.	+	.	Parent=Os12t0543751-00
Chr12	irgsp1_rep	CDS	21879977	21880028	.	+	0	Parent=Os12t0543751-00
Chr12	irgsp1_rep	CDS	21880161	21880378	.	+	2	Parent=Os12t0543751-00
Chr12	irgsp1_rep	three_prime_UTR	21880379	21880385	.	+	.	Parent=Os12t0543751-00
Chr12	irgsp1_rep	mRNA	21881648	21882778	.	-	.	ID=Os12t0543800-00;Name=Os12t0543800-00;Locus_id=Os12g0543800;Note=Conserved hypothetical protein.;Transcript_evidence=AK287997 (DDBJ%2C Secondary hit);ORF_evidence=NP_001176998.1 (RefSeq);Oryzabase=22560;TENOR=Os12t0543800-00;KEGG=Os12t0543800-00
Chr12	irgsp1_rep	five_prime_UTR	21882637	21882778	.	-	.	Parent=Os12t0543800-00
Chr12	irgsp1_rep	CDS	21882442	21882636	.	-	0	Parent=Os12t0543800-00
Chr12	irgsp1_rep	CDS	21881810	21882367	.	-	0	Parent=Os12t0543800-00
Chr12	irgsp1_rep	three_prime_UTR	21881648	21881809	.	-	.	Parent=Os12t0543800-00
Chr12	irgsp1_rep	mRNA	21934994	21935136	.	+	.	ID=Os12t0544360-00;Name=Os12t0544360-00;Locus_id=Os12g0544360;Note=Non-protein coding transcript.;Transcript_evidence=EU947769 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0544360-00
Chr12	irgsp1_rep	exon	21934994	21935136	.	+	.	Parent=Os12t0544360-00
Chr12	irgsp1_rep	mRNA	21964712	21970027	.	-	.	ID=Os12t0544600-00;Name=Os12t0544600-00;Locus_id=Os12g0544600;Note=Conserved hypothetical protein.;Transcript_evidence=AK120202 (DDBJ%2C Secondary hit);ORF_evidence=Q2QP23 (UniProt);TENOR=Os12t0544600-00
Chr12	irgsp1_rep	five_prime_UTR	21969698	21970027	.	-	.	Parent=Os12t0544600-00
Chr12	irgsp1_rep	five_prime_UTR	21969352	21969386	.	-	.	Parent=Os12t0544600-00
Chr12	irgsp1_rep	CDS	21969294	21969351	.	-	0	Parent=Os12t0544600-00
Chr12	irgsp1_rep	CDS	21966912	21967008	.	-	2	Parent=Os12t0544600-00
Chr12	irgsp1_rep	CDS	21966507	21966827	.	-	1	Parent=Os12t0544600-00
Chr12	irgsp1_rep	CDS	21966323	21966428	.	-	1	Parent=Os12t0544600-00
Chr12	irgsp1_rep	CDS	21965571	21966254	.	-	0	Parent=Os12t0544600-00
Chr12	irgsp1_rep	three_prime_UTR	21965525	21965570	.	-	.	Parent=Os12t0544600-00
Chr12	irgsp1_rep	three_prime_UTR	21965108	21965151	.	-	.	Parent=Os12t0544600-00
Chr12	irgsp1_rep	three_prime_UTR	21964712	21964993	.	-	.	Parent=Os12t0544600-00
Chr12	irgsp1_rep	mRNA	22010334	22012262	.	+	.	ID=Os12t0545400-00;Name=Os12t0545400-00;Locus_id=Os12g0545400;Note=Conserved hypothetical protein.;Transcript_evidence=AK375296 (DDBJ);ORF_evidence=Q2QP17 (UniProt);TENOR=Os12t0545400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	22010334	22011444	.	+	0	Parent=Os12t0545400-00
Chr12	irgsp1_rep	CDS	22011593	22011660	.	+	2	Parent=Os12t0545400-00
Chr12	irgsp1_rep	three_prime_UTR	22011661	22011755	.	+	.	Parent=Os12t0545400-00
Chr12	irgsp1_rep	three_prime_UTR	22011881	22012262	.	+	.	Parent=Os12t0545400-00
Chr12	irgsp1_rep	mRNA	22022000	22031120	.	+	.	ID=Os12t0545600-01;Name=Os12t0545600-01;Locus_id=Os12g0545600;Note=Conserved hypothetical protein.;Transcript_evidence=AK060319 (DDBJ%2C Best hit);ORF_evidence=Q6MW89 (UniProt);NIAS_FLcDNA=001-007-F04;TENOR=Os12t0545600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	22022000	22022406	.	+	.	Parent=Os12t0545600-01
Chr12	irgsp1_rep	CDS	22022407	22022454	.	+	0	Parent=Os12t0545600-01
Chr12	irgsp1_rep	CDS	22024313	22024403	.	+	0	Parent=Os12t0545600-01
Chr12	irgsp1_rep	CDS	22028648	22028667	.	+	2	Parent=Os12t0545600-01
Chr12	irgsp1_rep	three_prime_UTR	22028668	22028761	.	+	.	Parent=Os12t0545600-01
Chr12	irgsp1_rep	three_prime_UTR	22029252	22029366	.	+	.	Parent=Os12t0545600-01
Chr12	irgsp1_rep	three_prime_UTR	22030144	22030238	.	+	.	Parent=Os12t0545600-01
Chr12	irgsp1_rep	three_prime_UTR	22030343	22031120	.	+	.	Parent=Os12t0545600-01
Chr12	irgsp1_rep	mRNA	22047697	22054206	.	+	.	ID=Os12t0545900-01;Name=Os12t0545900-01;Locus_id=Os12g0545900;CGSNL Gene Symbol=PMS3;CGSNL Gene Name=PHOTOPERIOD SENSITIVE GENIC MALE STERILITY 3;Oryzabase Gene Symbol Synonym(s)=pms3%2C LDMAR;Oryzabase Gene Name Synonym(s)=photoperiod-sensitive genic male sterility3%2C long-day-specific male-fertility-associated RNA;Note=Conserved hypothetical protein.;Transcript_evidence=AK111270 (DDBJ%2C Best hit);ORF_evidence=Q5QLU3 (UniProt);NIAS_FLcDNA=002-180-F11;Oryzabase=2286;Expression=AK111270;TENOR=Os12t0545900-01;KEGG=Os12t0545900-01
Chr12	irgsp1_rep	five_prime_UTR	22047697	22047698	.	+	.	Parent=Os12t0545900-01
Chr12	irgsp1_rep	CDS	22047699	22048070	.	+	0	Parent=Os12t0545900-01
Chr12	irgsp1_rep	three_prime_UTR	22048071	22048127	.	+	.	Parent=Os12t0545900-01
Chr12	irgsp1_rep	three_prime_UTR	22053809	22054206	.	+	.	Parent=Os12t0545900-01
Chr12	irgsp1_rep	mRNA	22047716	22050415	.	+	.	ID=Os12t0545900-02;Name=Os12t0545900-02;Locus_id=Os12g0545900;CGSNL Gene Symbol=PMS3;CGSNL Gene Name=PHOTOPERIOD SENSITIVE GENIC MALE STERILITY 3;Oryzabase Gene Symbol Synonym(s)=pms3%2C LDMAR;Oryzabase Gene Name Synonym(s)=photoperiod-sensitive genic male sterility3%2C long-day-specific male-fertility-associated RNA;Note=Conserved hypothetical protein.;Transcript_evidence=AK071577 (DDBJ%2C Best hit);ORF_evidence=Q5QLU3 (UniProt);NIAS_FLcDNA=J023107K05;Oryzabase=2286;TENOR=Os12t0545900-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	22047716	22047716	.	+	.	Parent=Os12t0545900-02
Chr12	irgsp1_rep	CDS	22047717	22048070	.	+	0	Parent=Os12t0545900-02
Chr12	irgsp1_rep	three_prime_UTR	22048071	22048127	.	+	.	Parent=Os12t0545900-02
Chr12	irgsp1_rep	three_prime_UTR	22050048	22050415	.	+	.	Parent=Os12t0545900-02
Chr12	irgsp1_rep	mRNA	22047719	22051227	.	+	.	ID=Os12t0545900-03;Name=Os12t0545900-03;Locus_id=Os12g0545900;CGSNL Gene Symbol=PMS3;CGSNL Gene Name=PHOTOPERIOD SENSITIVE GENIC MALE STERILITY 3;Oryzabase Gene Symbol Synonym(s)=pms3%2C LDMAR;Oryzabase Gene Name Synonym(s)=photoperiod-sensitive genic male sterility3%2C long-day-specific male-fertility-associated RNA;Note=Conserved hypothetical protein.;Transcript_evidence=AK100176 (DDBJ%2C Best hit);ORF_evidence=Q5QLU3 (UniProt);NIAS_FLcDNA=J023029D09;Oryzabase=2286;TENOR=Os12t0545900-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	22047719	22047719	.	+	.	Parent=Os12t0545900-03
Chr12	irgsp1_rep	CDS	22047720	22048070	.	+	0	Parent=Os12t0545900-03
Chr12	irgsp1_rep	three_prime_UTR	22048071	22048127	.	+	.	Parent=Os12t0545900-03
Chr12	irgsp1_rep	three_prime_UTR	22050602	22051227	.	+	.	Parent=Os12t0545900-03
Chr12	irgsp1_rep	mRNA	22089434	22091864	.	+	.	ID=Os12t0546800-01;Name=Os12t0546800-01;Locus_id=Os12g0546800;CGSNL Gene Symbol=EXPA26;CGSNL Gene Name=ALPHA-EXPANSIN 26;Oryzabase Gene Symbol Synonym(s)=EXPA26%2C OsEXP26%2C osaEXPa1.29;Oryzabase Gene Name Synonym(s)=Rice expansin-26%2C Expansin-A26%2C Alpha-expansin-26;Note=Alpha expansin 26.;Transcript_evidence=AK071328 (DDBJ%2C Best hit);ORF_evidence=Q2QP13 (UniProt);GO=Biological Process: plant-type cell wall organization (GO:0009664),Cellular Component: extracellular region (GO:0005576);InterPro=Expansin (IPR002963),Expansin/pollen allergen%2C DPBB domain (IPR007112),Pollen allergen/expansin%2C C-terminal (IPR007117),Expansin/Lol pI (IPR007118),Barwin-related endoglucanase (IPR009009),Barwin-like endoglucanase (IPR014733);NIAS_FLcDNA=J023087C24;Oryzabase=9390;Expression=AK071328;TENOR=Os12t0546800-01;KEGG=Os12t0546800-01
Chr12	irgsp1_rep	five_prime_UTR	22089434	22089448	.	+	.	Parent=Os12t0546800-01
Chr12	irgsp1_rep	CDS	22089449	22090011	.	+	0	Parent=Os12t0546800-01
Chr12	irgsp1_rep	CDS	22091272	22091581	.	+	1	Parent=Os12t0546800-01
Chr12	irgsp1_rep	three_prime_UTR	22091582	22091864	.	+	.	Parent=Os12t0546800-01
Chr12	irgsp1_rep	mRNA	22100818	22101508	.	+	.	ID=Os12t0547100-01;Name=Os12t0547100-01;Locus_id=Os12g0547100;Note=Conserved hypothetical protein.;Transcript_evidence=AK105589 (DDBJ%2C Best hit);ORF_evidence=Q2R494 (UniProt);NIAS_FLcDNA=001-129-A05;Expression=AK105589;TENOR=Os12t0547100-01;KEGG=Os12t0547100-01
Chr12	irgsp1_rep	five_prime_UTR	22100818	22101049	.	+	.	Parent=Os12t0547100-01
Chr12	irgsp1_rep	CDS	22101050	22101403	.	+	0	Parent=Os12t0547100-01
Chr12	irgsp1_rep	three_prime_UTR	22101404	22101508	.	+	.	Parent=Os12t0547100-01
Chr12	irgsp1_rep	mRNA	22100893	22101499	.	+	.	ID=Os12t0547100-02;Name=Os12t0547100-02;Locus_id=Os12g0547100;Note=Conserved hypothetical protein.;Transcript_evidence=AK121480 (DDBJ%2C Best hit);ORF_evidence=Q2R494 (UniProt);NIAS_FLcDNA=J023149J02;Expression=AK121480;TENOR=Os12t0547100-02;KEGG=Os12t0547100-02
Chr12	irgsp1_rep	five_prime_UTR	22100893	22101049	.	+	.	Parent=Os12t0547100-02
Chr12	irgsp1_rep	CDS	22101050	22101403	.	+	0	Parent=Os12t0547100-02
Chr12	irgsp1_rep	three_prime_UTR	22101404	22101499	.	+	.	Parent=Os12t0547100-02
Chr12	irgsp1_rep	mRNA	22111925	22115516	.	-	.	ID=Os12t0547401-01;Name=Os12t0547401-01;Locus_id=Os12g0547401;Note=Non-protein coding transcript.;Transcript_evidence=AK242718 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090043O09;TENOR=Os12t0547401-01
Chr12	irgsp1_rep	exon	22111925	22115516	.	-	.	Parent=Os12t0547401-01
Chr12	irgsp1_rep	mRNA	22126680	22133291	.	+	.	ID=Os12t0547500-01;Name=Os12t0547500-01;Locus_id=Os12g0547500;RAP-DB Gene Symbol Synonym(s)=OsKCH1;RAP-DB Gene Name Synonym(s)=Kinesin O12;Oryzabase Gene Symbol Synonym(s)=OsKCH1%2C KCH1%2C OsKCH%2C KCH%2C O12;Oryzabase Gene Name Synonym(s)=Kinesin O12%2C Kinesin OsKCH1;Note=Kinesin-14 family member%2C Non-processive%2C minus-end-directed motor protein that transports actin filaments along microtubules%2C Organization of the cytoskeletal architecture%2C Cell elongation and division;Transcript_evidence=AK065586;ORF_evidence=Q0IMS9;GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: microtubule binding (GO:0008017);InterPro=CH domain superfamily (IPR036872),Kinesin motor domain superfamily (IPR036961),P-loop containing nucleoside triphosphate hydrolase (IPR027417),Calponin homology domain (IPR001715),Kinesin motor domain (IPR001752);NIAS_FLcDNA=J013034O12;Manual Curation=April 23%2C 2018;Literature_PMID=27250543,19561334;Oryzabase=13036;TENOR=Os12t0547500-01;KEGG=Os12t0547500-01
Chr12	irgsp1_rep	five_prime_UTR	22126680	22126874	.	+	.	Parent=Os12t0547500-01
Chr12	irgsp1_rep	CDS	22126875	22126971	.	+	0	Parent=Os12t0547500-01
Chr12	irgsp1_rep	CDS	22127667	22127833	.	+	2	Parent=Os12t0547500-01
Chr12	irgsp1_rep	CDS	22127930	22128073	.	+	0	Parent=Os12t0547500-01
Chr12	irgsp1_rep	CDS	22128507	22128764	.	+	0	Parent=Os12t0547500-01
Chr12	irgsp1_rep	CDS	22128846	22128917	.	+	0	Parent=Os12t0547500-01
Chr12	irgsp1_rep	CDS	22129010	22129075	.	+	0	Parent=Os12t0547500-01
Chr12	irgsp1_rep	CDS	22129463	22129597	.	+	0	Parent=Os12t0547500-01
Chr12	irgsp1_rep	CDS	22129687	22129768	.	+	0	Parent=Os12t0547500-01
Chr12	irgsp1_rep	CDS	22129853	22129948	.	+	2	Parent=Os12t0547500-01
Chr12	irgsp1_rep	CDS	22130058	22130234	.	+	2	Parent=Os12t0547500-01
Chr12	irgsp1_rep	CDS	22130337	22130443	.	+	2	Parent=Os12t0547500-01
Chr12	irgsp1_rep	CDS	22130532	22130707	.	+	0	Parent=Os12t0547500-01
Chr12	irgsp1_rep	CDS	22130830	22130991	.	+	1	Parent=Os12t0547500-01
Chr12	irgsp1_rep	CDS	22131074	22131327	.	+	1	Parent=Os12t0547500-01
Chr12	irgsp1_rep	CDS	22131409	22131572	.	+	2	Parent=Os12t0547500-01
Chr12	irgsp1_rep	CDS	22131674	22131832	.	+	0	Parent=Os12t0547500-01
Chr12	irgsp1_rep	CDS	22132300	22132712	.	+	0	Parent=Os12t0547500-01
Chr12	irgsp1_rep	CDS	22132800	22132935	.	+	1	Parent=Os12t0547500-01
Chr12	irgsp1_rep	three_prime_UTR	22132936	22133291	.	+	.	Parent=Os12t0547500-01
Chr12	irgsp1_rep	mRNA	22133336	22136891	.	-	.	ID=Os12t0547600-01;Name=Os12t0547600-01;Locus_id=Os12g0547600;Oryzabase Gene Symbol Synonym(s)=CaMBP;Oryzabase Gene Name Synonym(s)=Calmodulin-Binding Protein;Note=Calmodulin binding protein-like domain containing protein.;Transcript_evidence=AK067865 (DDBJ%2C Best hit);ORF_evidence=Q2QP06 (UniProt);InterPro=Calmodulin binding protein-like (IPR012416);NIAS_FLcDNA=J013124K14;Oryzabase=19884;TENOR=Os12t0547600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	22136880	22136891	.	-	.	Parent=Os12t0547600-01
Chr12	irgsp1_rep	CDS	22136770	22136879	.	-	0	Parent=Os12t0547600-01
Chr12	irgsp1_rep	CDS	22136552	22136669	.	-	1	Parent=Os12t0547600-01
Chr12	irgsp1_rep	CDS	22136205	22136263	.	-	0	Parent=Os12t0547600-01
Chr12	irgsp1_rep	CDS	22135746	22136079	.	-	1	Parent=Os12t0547600-01
Chr12	irgsp1_rep	CDS	22135485	22135490	.	-	0	Parent=Os12t0547600-01
Chr12	irgsp1_rep	three_prime_UTR	22135331	22135484	.	-	.	Parent=Os12t0547600-01
Chr12	irgsp1_rep	three_prime_UTR	22134967	22135164	.	-	.	Parent=Os12t0547600-01
Chr12	irgsp1_rep	three_prime_UTR	22134729	22134891	.	-	.	Parent=Os12t0547600-01
Chr12	irgsp1_rep	three_prime_UTR	22134568	22134644	.	-	.	Parent=Os12t0547600-01
Chr12	irgsp1_rep	three_prime_UTR	22134206	22134475	.	-	.	Parent=Os12t0547600-01
Chr12	irgsp1_rep	three_prime_UTR	22134002	22134080	.	-	.	Parent=Os12t0547600-01
Chr12	irgsp1_rep	three_prime_UTR	22133336	22133920	.	-	.	Parent=Os12t0547600-01
Chr12	irgsp1_rep	mRNA	22133842	22136891	.	-	.	ID=Os12t0547600-02;Name=Os12t0547600-02;Locus_id=Os12g0547600;Oryzabase Gene Symbol Synonym(s)=CaMBP;Oryzabase Gene Name Synonym(s)=Calmodulin-Binding Protein;Note=Hypothetical conserved gene.;Transcript_evidence=AK067126 (DDBJ%2C Best hit);ORF_evidence=Q2QP06 (UniProt);InterPro=Calmodulin binding protein-like (IPR012416);NIAS_FLcDNA=J013096O03;Oryzabase=19884;TENOR=Os12t0547600-02
Chr12	irgsp1_rep	five_prime_UTR	22136880	22136891	.	-	.	Parent=Os12t0547600-02
Chr12	irgsp1_rep	CDS	22136770	22136879	.	-	0	Parent=Os12t0547600-02
Chr12	irgsp1_rep	CDS	22136552	22136669	.	-	1	Parent=Os12t0547600-02
Chr12	irgsp1_rep	CDS	22136205	22136263	.	-	0	Parent=Os12t0547600-02
Chr12	irgsp1_rep	CDS	22135592	22136079	.	-	1	Parent=Os12t0547600-02
Chr12	irgsp1_rep	CDS	22135331	22135491	.	-	2	Parent=Os12t0547600-02
Chr12	irgsp1_rep	CDS	22134967	22135164	.	-	0	Parent=Os12t0547600-02
Chr12	irgsp1_rep	CDS	22134729	22134891	.	-	0	Parent=Os12t0547600-02
Chr12	irgsp1_rep	CDS	22134568	22134644	.	-	2	Parent=Os12t0547600-02
Chr12	irgsp1_rep	CDS	22134206	22134475	.	-	0	Parent=Os12t0547600-02
Chr12	irgsp1_rep	CDS	22134002	22134080	.	-	0	Parent=Os12t0547600-02
Chr12	irgsp1_rep	CDS	22133842	22133920	.	-	2	Parent=Os12t0547600-02
Chr12	irgsp1_rep	mRNA	22163667	22169820	.	-	.	ID=Os12t0548100-01;Name=Os12t0548100-01;Locus_id=Os12g0548100;Note=Similar to G14587-6 protein (Fragment).;Transcript_evidence=AK101059 (DDBJ%2C Best hit);ORF_evidence=XP_002870202.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033022A10;Expression=AK101059;TENOR=Os12t0548100-01;KEGG=Os12t0548100-01
Chr12	irgsp1_rep	five_prime_UTR	22169741	22169820	.	-	.	Parent=Os12t0548100-01
Chr12	irgsp1_rep	CDS	22167599	22169740	.	-	0	Parent=Os12t0548100-01
Chr12	irgsp1_rep	CDS	22166389	22166880	.	-	0	Parent=Os12t0548100-01
Chr12	irgsp1_rep	CDS	22166223	22166314	.	-	0	Parent=Os12t0548100-01
Chr12	irgsp1_rep	CDS	22165797	22165884	.	-	1	Parent=Os12t0548100-01
Chr12	irgsp1_rep	CDS	22165610	22165724	.	-	0	Parent=Os12t0548100-01
Chr12	irgsp1_rep	CDS	22165307	22165436	.	-	2	Parent=Os12t0548100-01
Chr12	irgsp1_rep	CDS	22165012	22165186	.	-	1	Parent=Os12t0548100-01
Chr12	irgsp1_rep	CDS	22163833	22164465	.	-	0	Parent=Os12t0548100-01
Chr12	irgsp1_rep	three_prime_UTR	22163667	22163832	.	-	.	Parent=Os12t0548100-01
Chr12	irgsp1_rep	mRNA	22178102	22180480	.	-	.	ID=Os12t0548200-01;Name=Os12t0548200-01;Locus_id=Os12g0548200;Oryzabase Gene Symbol Synonym(s)=OsDjC82%2C DjC82%2C XB21;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C82%2C XA21 binding protein 21;Note=Hypothetical conserved gene.;Transcript_evidence=AK103433 (DDBJ%2C Best hit);ORF_evidence=B8BMD4 (UniProt);NIAS_FLcDNA=J033129A18;Oryzabase=12239;TENOR=Os12t0548200-01
Chr12	irgsp1_rep	five_prime_UTR	22180167	22180480	.	-	.	Parent=Os12t0548200-01
Chr12	irgsp1_rep	CDS	22179583	22180166	.	-	0	Parent=Os12t0548200-01
Chr12	irgsp1_rep	CDS	22178102	22178728	.	-	1	Parent=Os12t0548200-01
Chr12	irgsp1_rep	mRNA	22173286	22180478	.	-	.	ID=Os12t0548200-02;Name=Os12t0548200-02;Locus_id=Os12g0548200;RAP-DB Gene Symbol Synonym(s)=XB21;RAP-DB Gene Name Synonym(s)=XA21 BINDING PROTEIN 21%2C XA21 binding protein 21;Oryzabase Gene Symbol Synonym(s)=OsDjC82%2C DjC82%2C XB21;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C82%2C XA21 binding protein 21;Note=Auxilin-like protein%2C Type III J-protein%2C Positive regulation of resistance to Xoo%2C Regulation of cell death;Transcript_evidence=AK072993;ORF_evidence=Q2QNZ9;InterPro=Chaperone J-domain superfamily (IPR036869);NIAS_FLcDNA=J023146P12;Manual Curation=January 21%2C 2019;Literature_PMID=28577284,28534133;Oryzabase=12239;Expression=AK072993;TENOR=Os12t0548200-02
Chr12	irgsp1_rep	five_prime_UTR	22180167	22180478	.	-	.	Parent=Os12t0548200-02
Chr12	irgsp1_rep	CDS	22179583	22180166	.	-	0	Parent=Os12t0548200-02
Chr12	irgsp1_rep	CDS	22177126	22178728	.	-	1	Parent=Os12t0548200-02
Chr12	irgsp1_rep	CDS	22176920	22177040	.	-	0	Parent=Os12t0548200-02
Chr12	irgsp1_rep	CDS	22176724	22176821	.	-	2	Parent=Os12t0548200-02
Chr12	irgsp1_rep	CDS	22176466	22176531	.	-	0	Parent=Os12t0548200-02
Chr12	irgsp1_rep	CDS	22175509	22175598	.	-	0	Parent=Os12t0548200-02
Chr12	irgsp1_rep	CDS	22174672	22174848	.	-	0	Parent=Os12t0548200-02
Chr12	irgsp1_rep	CDS	22173833	22173871	.	-	0	Parent=Os12t0548200-02
Chr12	irgsp1_rep	three_prime_UTR	22173286	22173832	.	-	.	Parent=Os12t0548200-02
Chr12	irgsp1_rep	mRNA	22182885	22189574	.	+	.	ID=Os12t0548300-01;Name=Os12t0548300-01;Locus_id=Os12g0548300;RAP-DB Gene Symbol Synonym(s)=OsNDPK2%2C WSL12;RAP-DB Gene Name Synonym(s)=NUCLEOSIDE DIPHOSPHATE KINASE 2%2C Nucleoside diphosphate kinase 2%2C White stripe leaf 12;CGSNL Gene Symbol=YSS2;CGSNL Gene Name=YOUNG SEEDLING STRIPE 2;Oryzabase Gene Symbol Synonym(s)=OsNDPK2%2C NDPK2%2C BIP114;Oryzabase Gene Name Synonym(s)=nucleoside diphosphate kinase 2%2C brassinosteroid receptor kinase (BRI1)-interacting protein 114%2C BRI1-interacting protein 114%2C brassinosteroid receptor kinase-interacting protein 114;Note=Nucleoside diphosphate kinase%2C Regulation of chloroplast development and chlorophyll biosynthesis%2C Abiotic stress response (ABA and salinity);Transcript_evidence=AK070054;ORF_evidence=Q0IMS5;GO=Biological Process: nucleoside diphosphate phosphorylation (GO:0006165),Biological Process: GTP biosynthetic process (GO:0006183),Biological Process: UTP biosynthetic process (GO:0006228),Biological Process: CTP biosynthetic process (GO:0006241),Molecular Function: nucleoside diphosphate kinase activity (GO:0004550);InterPro=Nucleoside diphosphate kinase (IPR001564),Nucleoside diphosphate kinase-like domain (IPR034907),Nucleoside diphosphate kinase%2C active site (IPR023005);NIAS_FLcDNA=J023039G14;Manual Curation=May 24%2C 2017;Literature_PMID=27212889,21897044;Oryzabase=9877;Expression=AK070054;TENOR=Os12t0548300-01;KEGG=Os12t0548300-01 (EC:2.7.4.6);Subcellular location=plastid (GO:0009536), chloroplast (GO:0009507)
Chr12	irgsp1_rep	five_prime_UTR	22182885	22182997	.	+	.	Parent=Os12t0548300-01
Chr12	irgsp1_rep	CDS	22182998	22183210	.	+	0	Parent=Os12t0548300-01
Chr12	irgsp1_rep	CDS	22187477	22187527	.	+	0	Parent=Os12t0548300-01
Chr12	irgsp1_rep	CDS	22187666	22187752	.	+	0	Parent=Os12t0548300-01
Chr12	irgsp1_rep	CDS	22188315	22188395	.	+	0	Parent=Os12t0548300-01
Chr12	irgsp1_rep	CDS	22188492	22188604	.	+	0	Parent=Os12t0548300-01
Chr12	irgsp1_rep	CDS	22188733	22188782	.	+	1	Parent=Os12t0548300-01
Chr12	irgsp1_rep	CDS	22189041	22189108	.	+	2	Parent=Os12t0548300-01
Chr12	irgsp1_rep	three_prime_UTR	22189109	22189574	.	+	.	Parent=Os12t0548300-01
Chr12	irgsp1_rep	mRNA	22184720	22189908	.	+	.	ID=Os12t0548300-02;Name=Os12t0548300-02;Locus_id=Os12g0548300;CGSNL Gene Symbol=YSS2;CGSNL Gene Name=YOUNG SEEDLING STRIPE 2;Oryzabase Gene Symbol Synonym(s)=OsNDPK2%2C NDPK2%2C BIP114;Oryzabase Gene Name Synonym(s)=nucleoside diphosphate kinase 2%2C brassinosteroid receptor kinase (BRI1)-interacting protein 114%2C BRI1-interacting protein 114%2C brassinosteroid receptor kinase-interacting protein 114;Note=Similar to Nucleoside diphosphate kinase (Fragment).;Transcript_evidence=AK288930 (DDBJ%2C Best hit);ORF_evidence=Q762A0 (UniProt);GO=Biological Process: nucleoside diphosphate phosphorylation (GO:0006165),Biological Process: GTP biosynthetic process (GO:0006183),Biological Process: UTP biosynthetic process (GO:0006228),Biological Process: CTP biosynthetic process (GO:0006241),Molecular Function: nucleoside diphosphate kinase activity (GO:0004550),Molecular Function: ATP binding (GO:0005524);InterPro=Nucleoside diphosphate kinase (IPR001564);NIAS_FLcDNA=J090082H13;Oryzabase=9877;TENOR=Os12t0548300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	22184720	22188431	.	+	.	Parent=Os12t0548300-02
Chr12	irgsp1_rep	CDS	22188432	22188668	.	+	0	Parent=Os12t0548300-02
Chr12	irgsp1_rep	three_prime_UTR	22188669	22189908	.	+	.	Parent=Os12t0548300-02
Chr12	irgsp1_rep	mRNA	22187482	22189289	.	+	.	ID=Os12t0548300-03;Name=Os12t0548300-03;Locus_id=Os12g0548300;CGSNL Gene Symbol=YSS2;CGSNL Gene Name=YOUNG SEEDLING STRIPE 2;Oryzabase Gene Symbol Synonym(s)=OsNDPK2%2C NDPK2%2C BIP114;Oryzabase Gene Name Synonym(s)=nucleoside diphosphate kinase 2%2C brassinosteroid receptor kinase (BRI1)-interacting protein 114%2C BRI1-interacting protein 114%2C brassinosteroid receptor kinase-interacting protein 114;Note=Similar to Nucleoside diphosphate kinase (Fragment).;Transcript_evidence=AK058388 (DDBJ%2C Best hit);ORF_evidence=Q762A0 (UniProt);GO=Biological Process: nucleoside diphosphate phosphorylation (GO:0006165),Biological Process: GTP biosynthetic process (GO:0006183),Biological Process: UTP biosynthetic process (GO:0006228),Biological Process: CTP biosynthetic process (GO:0006241),Molecular Function: nucleoside diphosphate kinase activity (GO:0004550),Molecular Function: ATP binding (GO:0005524);InterPro=Nucleoside diphosphate kinase (IPR001564),Nucleoside diphosphate kinase%2C active site (IPR023005);NIAS_FLcDNA=001-015-A02;Oryzabase=9877;Expression=AK058388;TENOR=Os12t0548300-03;KEGG=Os12t0548300-03 (EC:2.7.4.6)
Chr12	irgsp1_rep	five_prime_UTR	22187482	22187482	.	+	.	Parent=Os12t0548300-03
Chr12	irgsp1_rep	CDS	22187483	22187527	.	+	0	Parent=Os12t0548300-03
Chr12	irgsp1_rep	CDS	22187666	22187752	.	+	0	Parent=Os12t0548300-03
Chr12	irgsp1_rep	CDS	22188315	22188395	.	+	0	Parent=Os12t0548300-03
Chr12	irgsp1_rep	CDS	22188492	22188604	.	+	0	Parent=Os12t0548300-03
Chr12	irgsp1_rep	CDS	22188733	22188782	.	+	1	Parent=Os12t0548300-03
Chr12	irgsp1_rep	CDS	22189041	22189108	.	+	2	Parent=Os12t0548300-03
Chr12	irgsp1_rep	three_prime_UTR	22189109	22189289	.	+	.	Parent=Os12t0548300-03
Chr12	irgsp1_rep	mRNA	22193325	22193831	.	-	.	ID=Os12t0548401-01;Name=Os12t0548401-01;Locus_id=Os12g0548401;Note=Similar to Proteinase inhibitor.;Transcript_evidence=AK240871 (DDBJ%2C Best hit);ORF_evidence=B8QVS2 (UniProt);GO=Biological Process: response to wounding (GO:0009611),Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Proteinase inhibitor I13%2C potato inhibitor I (IPR000864);NIAS_FLcDNA=J065025E22;TENOR=Os12t0548401-01;KEGG=Os12t0548401-01
Chr12	irgsp1_rep	five_prime_UTR	22193740	22193831	.	-	.	Parent=Os12t0548401-01
Chr12	irgsp1_rep	CDS	22193506	22193739	.	-	0	Parent=Os12t0548401-01
Chr12	irgsp1_rep	three_prime_UTR	22193325	22193505	.	-	.	Parent=Os12t0548401-01
Chr12	irgsp1_rep	mRNA	22197957	22198462	.	-	.	ID=Os12t0548501-01;Name=Os12t0548501-01;Locus_id=Os12g0548501;Note=Similar to CI2C.;Transcript_evidence=AK241092 (DDBJ%2C Best hit);ORF_evidence=Q8LLA7 (UniProt);GO=Biological Process: response to wounding (GO:0009611),Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Proteinase inhibitor I13%2C potato inhibitor I (IPR000864);NIAS_FLcDNA=J065076A08;Oryzabase=19838;TENOR=Os12t0548501-01;KEGG=Os12t0548501-01
Chr12	irgsp1_rep	five_prime_UTR	22198372	22198462	.	-	.	Parent=Os12t0548501-01
Chr12	irgsp1_rep	CDS	22198090	22198371	.	-	0	Parent=Os12t0548501-01
Chr12	irgsp1_rep	three_prime_UTR	22197957	22198089	.	-	.	Parent=Os12t0548501-01
Chr12	irgsp1_rep	mRNA	22202703	22203153	.	-	.	ID=Os12t0548700-01;Name=Os12t0548700-01;Locus_id=Os12g0548700;Oryzabase Gene Name Synonym(s)=Subtilisin/chymotrypsin inhibitor;Note=Similar to MPI.;Transcript_evidence=AK058739 (DDBJ%2C Best hit);ORF_evidence=NP_001151896.1 (RefSeq);GO=Biological Process: response to wounding (GO:0009611),Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);InterPro=Proteinase inhibitor I13%2C potato inhibitor I (IPR000864);NIAS_FLcDNA=001-019-G06;Oryzabase=23037;Expression=AK058739;TENOR=Os12t0548700-01;KEGG=Os12t0548700-01
Chr12	irgsp1_rep	five_prime_UTR	22203046	22203153	.	-	.	Parent=Os12t0548700-01
Chr12	irgsp1_rep	CDS	22202839	22203045	.	-	0	Parent=Os12t0548700-01
Chr12	irgsp1_rep	three_prime_UTR	22202703	22202838	.	-	.	Parent=Os12t0548700-01
Chr12	irgsp1_rep	mRNA	22213958	22218978	.	+	.	ID=Os12t0548800-01;Name=Os12t0548800-01;Locus_id=Os12g0548800;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=AK065912 (DDBJ%2C Best hit);ORF_evidence=B9GDM0 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013043P10;TENOR=Os12t0548800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	22213958	22213958	.	+	.	Parent=Os12t0548800-01
Chr12	irgsp1_rep	CDS	22213959	22214139	.	+	0	Parent=Os12t0548800-01
Chr12	irgsp1_rep	CDS	22214976	22215237	.	+	2	Parent=Os12t0548800-01
Chr12	irgsp1_rep	CDS	22216397	22218032	.	+	1	Parent=Os12t0548800-01
Chr12	irgsp1_rep	CDS	22218161	22218667	.	+	0	Parent=Os12t0548800-01
Chr12	irgsp1_rep	three_prime_UTR	22218668	22218978	.	+	.	Parent=Os12t0548800-01
Chr12	irgsp1_rep	mRNA	22239581	22240487	.	-	.	ID=Os12t0549700-01;Name=Os12t0549700-01;Locus_id=Os12g0549700;Note=Hypothetical conserved gene.;Transcript_evidence=AK243153 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J100032P04;TENOR=Os12t0549700-01;KEGG=Os12t0549700-01
Chr12	irgsp1_rep	five_prime_UTR	22240487	22240487	.	-	.	Parent=Os12t0549700-01
Chr12	irgsp1_rep	CDS	22240088	22240486	.	-	0	Parent=Os12t0549700-01
Chr12	irgsp1_rep	three_prime_UTR	22239581	22240087	.	-	.	Parent=Os12t0549700-01
Chr12	irgsp1_rep	mRNA	22248392	22254634	.	+	.	ID=Os12t0549800-00;Name=Os12t0549800-00;Locus_id=Os12g0549800;Note=Armadillo-type fold domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9GDM3 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-type fold (IPR016024);TENOR=Os12t0549800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	22248392	22248681	.	+	0	Parent=Os12t0549800-00
Chr12	irgsp1_rep	CDS	22252305	22253871	.	+	1	Parent=Os12t0549800-00
Chr12	irgsp1_rep	CDS	22254002	22254634	.	+	0	Parent=Os12t0549800-00
Chr12	irgsp1_rep	mRNA	22283176	22284740	.	-	.	ID=Os12t0550600-01;Name=Os12t0550600-01;Locus_id=Os12g0550600;Oryzabase Gene Symbol Synonym(s)=qCTR12;Oryzabase Gene Name Synonym(s)=conserved hypothetical protein;Note=Hypothetical protein.;Transcript_evidence=AK059672 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-031-G01;Oryzabase=20416;Expression=AK059672;TENOR=Os12t0550600-01;KEGG=Os12t0550600-01
Chr12	irgsp1_rep	five_prime_UTR	22284304	22284740	.	-	.	Parent=Os12t0550600-01
Chr12	irgsp1_rep	CDS	22284046	22284303	.	-	0	Parent=Os12t0550600-01
Chr12	irgsp1_rep	three_prime_UTR	22284018	22284045	.	-	.	Parent=Os12t0550600-01
Chr12	irgsp1_rep	three_prime_UTR	22283821	22283934	.	-	.	Parent=Os12t0550600-01
Chr12	irgsp1_rep	three_prime_UTR	22283176	22283440	.	-	.	Parent=Os12t0550600-01
Chr12	irgsp1_rep	mRNA	22291722	22294711	.	-	.	ID=Os12t0550800-01;Name=Os12t0550800-01;Locus_id=Os12g0550800;Note=Hypothetical conserved gene.;Transcript_evidence=AK099023 (DDBJ%2C Best hit),AK061828 (DDBJ%2C Best hit),AK098944 (DDBJ%2C Best hit);ORF_evidence=Q8GVK6 (UniProt);NIAS_FLcDNA=J013126L07,001-040-C10,J013045G24;Expression=AK099023;TENOR=Os12t0550800-01;KEGG=Os12t0550800-01
Chr12	irgsp1_rep	five_prime_UTR	22292007	22294711	.	-	.	Parent=Os12t0550800-01
Chr12	irgsp1_rep	CDS	22291863	22292006	.	-	0	Parent=Os12t0550800-01
Chr12	irgsp1_rep	three_prime_UTR	22291722	22291862	.	-	.	Parent=Os12t0550800-01
Chr12	irgsp1_rep	mRNA	22292956	22294707	.	-	.	ID=Os12t0550800-02;Name=Os12t0550800-02;Locus_id=Os12g0550800;Note=Conserved hypothetical protein.;Transcript_evidence=AK102550 (DDBJ%2C Best hit);ORF_evidence=Q2QNX4 (UniProt);NIAS_FLcDNA=J033097B21;Expression=AK102550;TENOR=Os12t0550800-02;KEGG=Os12t0550800-02
Chr12	irgsp1_rep	five_prime_UTR	22294655	22294707	.	-	.	Parent=Os12t0550800-02
Chr12	irgsp1_rep	CDS	22294169	22294654	.	-	0	Parent=Os12t0550800-02
Chr12	irgsp1_rep	CDS	22293687	22293740	.	-	0	Parent=Os12t0550800-02
Chr12	irgsp1_rep	three_prime_UTR	22292956	22293686	.	-	.	Parent=Os12t0550800-02
Chr12	irgsp1_rep	mRNA	22292203	22293653	.	-	.	ID=Os12t0550800-05;Name=Os12t0550800-05;Locus_id=Os12g0550800;Note=Conserved hypothetical protein.;Transcript_evidence=AK064535 (DDBJ%2C Best hit);ORF_evidence=NP_001173128.1 (RefSeq);NIAS_FLcDNA=002-111-H08;TENOR=Os12t0550800-05;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	22292534	22293653	.	-	.	Parent=Os12t0550800-05
Chr12	irgsp1_rep	CDS	22292309	22292533	.	-	0	Parent=Os12t0550800-05
Chr12	irgsp1_rep	three_prime_UTR	22292203	22292308	.	-	.	Parent=Os12t0550800-05
Chr12	irgsp1_rep	mRNA	22291145	22292466	.	-	.	ID=Os12t0550800-06;Name=Os12t0550800-06;Locus_id=Os12g0550800;Note=Non-protein coding transcript.;Transcript_evidence=AK106566 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-110-D12;TENOR=Os12t0550800-06
Chr12	irgsp1_rep	exon	22291145	22292466	.	-	.	Parent=Os12t0550800-06
Chr12	irgsp1_rep	mRNA	22328264	22334839	.	-	.	ID=Os12t0551200-01;Name=Os12t0551200-01;Locus_id=Os12g0551200;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK102750 (DDBJ%2C Best hit);ORF_evidence=Q2QNW7 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989);NIAS_FLcDNA=J033106K19;Expression=AK102750;TENOR=Os12t0551200-01;KEGG=Os12t0551200-01
Chr12	irgsp1_rep	five_prime_UTR	22334797	22334839	.	-	.	Parent=Os12t0551200-01
Chr12	irgsp1_rep	CDS	22334585	22334796	.	-	0	Parent=Os12t0551200-01
Chr12	irgsp1_rep	CDS	22330475	22330850	.	-	1	Parent=Os12t0551200-01
Chr12	irgsp1_rep	CDS	22329212	22330042	.	-	0	Parent=Os12t0551200-01
Chr12	irgsp1_rep	CDS	22328428	22329081	.	-	0	Parent=Os12t0551200-01
Chr12	irgsp1_rep	three_prime_UTR	22328264	22328427	.	-	.	Parent=Os12t0551200-01
Chr12	irgsp1_rep	mRNA	22329026	22334839	.	-	.	ID=Os12t0551200-02;Name=Os12t0551200-02;Locus_id=Os12g0551200;Note=Similar to cDNA clone:001-124-E09%2C full insert sequence.;Transcript_evidence=AK106238 (DDBJ%2C Best hit);ORF_evidence=B9GDN0 (UniProt);NIAS_FLcDNA=002-100-C08;Expression=AK106238;TENOR=Os12t0551200-02;KEGG=Os12t0551200-02
Chr12	irgsp1_rep	five_prime_UTR	22334797	22334839	.	-	.	Parent=Os12t0551200-02
Chr12	irgsp1_rep	CDS	22334585	22334796	.	-	0	Parent=Os12t0551200-02
Chr12	irgsp1_rep	CDS	22329986	22330850	.	-	1	Parent=Os12t0551200-02
Chr12	irgsp1_rep	CDS	22329757	22329957	.	-	0	Parent=Os12t0551200-02
Chr12	irgsp1_rep	three_prime_UTR	22329212	22329756	.	-	.	Parent=Os12t0551200-02
Chr12	irgsp1_rep	three_prime_UTR	22329026	22329081	.	-	.	Parent=Os12t0551200-02
Chr12	irgsp1_rep	mRNA	22328237	22334829	.	-	.	ID=Os12t0551200-03;Name=Os12t0551200-03;Locus_id=Os12g0551200;Note=Hypothetical conserved gene.;Transcript_evidence=AK063993 (DDBJ%2C Best hit);ORF_evidence=B9GDN0 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989);NIAS_FLcDNA=001-124-E09;Expression=AK063993;TENOR=Os12t0551200-03;KEGG=Os12t0551200-03
Chr12	irgsp1_rep	five_prime_UTR	22334797	22334829	.	-	.	Parent=Os12t0551200-03
Chr12	irgsp1_rep	CDS	22334585	22334796	.	-	0	Parent=Os12t0551200-03
Chr12	irgsp1_rep	CDS	22329212	22330850	.	-	1	Parent=Os12t0551200-03
Chr12	irgsp1_rep	CDS	22328428	22329081	.	-	0	Parent=Os12t0551200-03
Chr12	irgsp1_rep	three_prime_UTR	22328237	22328427	.	-	.	Parent=Os12t0551200-03
Chr12	irgsp1_rep	mRNA	22395524	22397199	.	+	.	ID=Os12t0551900-00;Name=Os12t0551900-00;Locus_id=Os12g0551900;Note=Peptidase C48%2C SUMO/Sentrin/Ubl1 domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001177002.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: cysteine-type peptidase activity (GO:0008234);InterPro=Peptidase C48%2C SUMO/Sentrin/Ubl1 (IPR003653);TENOR=Os12t0551900-00
Chr12	irgsp1_rep	CDS	22395524	22396296	.	+	0	Parent=Os12t0551900-00
Chr12	irgsp1_rep	CDS	22396372	22396551	.	+	1	Parent=Os12t0551900-00
Chr12	irgsp1_rep	CDS	22396626	22396914	.	+	1	Parent=Os12t0551900-00
Chr12	irgsp1_rep	CDS	22396996	22397199	.	+	0	Parent=Os12t0551900-00
Chr12	irgsp1_rep	mRNA	22417223	22419263	.	+	.	ID=Os12t0552200-01;Name=Os12t0552200-01;Locus_id=Os12g0552200;Oryzabase Gene Symbol Synonym(s)=OspPLAIIlambda%2C pPLAIIlambda;Oryzabase Gene Name Synonym(s)=Patatin-related phospholipase A II lambda;Note=Similar to Patatin-like phospholipase family protein.;Transcript_evidence=AK106375 (DDBJ%2C Best hit);ORF_evidence=Q2QNW3 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: metabolic process (GO:0008152);InterPro=Patatin/Phospholipase A2-related (IPR002641),Acyl transferase/acyl hydrolase/lysophospholipase (IPR016035);NIAS_FLcDNA=002-102-D02;Oryzabase=19870;TENOR=Os12t0552200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	22417223	22417223	.	+	.	Parent=Os12t0552200-01
Chr12	irgsp1_rep	CDS	22417224	22417820	.	+	0	Parent=Os12t0552200-01
Chr12	irgsp1_rep	CDS	22418253	22418417	.	+	0	Parent=Os12t0552200-01
Chr12	irgsp1_rep	CDS	22418505	22419086	.	+	0	Parent=Os12t0552200-01
Chr12	irgsp1_rep	three_prime_UTR	22419087	22419263	.	+	.	Parent=Os12t0552200-01
Chr12	irgsp1_rep	mRNA	22419950	22427809	.	-	.	ID=Os12t0552300-01;Name=Os12t0552300-01;Locus_id=Os12g0552300;RAP-DB Gene Symbol Synonym(s)=PPS1;CGSNL Gene Symbol=PPS1;Oryzabase Gene Symbol Synonym(s)=PPR%2C OsPPS1;Oryzabase Gene Name Synonym(s)=Pentatricopeptide repeat (PPR) protein;Note=DYW motif-containing pentatricopeptide repeat protein%2C RNA editing of nad3 transcripts in mitochondria;Transcript_evidence=XM_015762859;ORF_evidence=A0A0P0YB55;GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Tetratricopeptide-like helical domain superfamily (IPR011990),DYW domain (IPR032867),Pentatricopeptide repeat (IPR002885);Manual Curation=July 25%2C 2018;Literature_PMID=30019754;Oryzabase=22509,22597;TENOR=Os12t0552300-00;Subcellular location=mitochondrion (GO:0005739)
Chr12	irgsp1_rep	five_prime_UTR	22427186	22427809	.	-	.	Parent=Os12t0552300-01
Chr12	irgsp1_rep	CDS	22424426	22427185	.	-	0	Parent=Os12t0552300-01
Chr12	irgsp1_rep	three_prime_UTR	22424149	22424425	.	-	.	Parent=Os12t0552300-01
Chr12	irgsp1_rep	three_prime_UTR	22423826	22424062	.	-	.	Parent=Os12t0552300-01
Chr12	irgsp1_rep	three_prime_UTR	22423403	22423577	.	-	.	Parent=Os12t0552300-01
Chr12	irgsp1_rep	three_prime_UTR	22421748	22422098	.	-	.	Parent=Os12t0552300-01
Chr12	irgsp1_rep	three_prime_UTR	22420706	22421666	.	-	.	Parent=Os12t0552300-01
Chr12	irgsp1_rep	three_prime_UTR	22419950	22420538	.	-	.	Parent=Os12t0552300-01
Chr12	irgsp1_rep	mRNA	22427863	22429178	.	-	.	ID=Os12t0552400-01;Name=Os12t0552400-01;Locus_id=Os12g0552400;Note=Rossmann-like alpha/beta/alpha sandwich fold domain containing protein.;Transcript_evidence=AK070150 (DDBJ%2C Best hit);ORF_evidence=NP_001150162.1 (RefSeq);GO=Biological Process: response to stress (GO:0006950);InterPro=Universal stress protein A (IPR006015),UspA (IPR006016),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J023047P03;Expression=AK070150;TENOR=Os12t0552400-01;KEGG=Os12t0552400-01
Chr12	irgsp1_rep	five_prime_UTR	22429099	22429178	.	-	.	Parent=Os12t0552400-01
Chr12	irgsp1_rep	CDS	22428921	22429098	.	-	0	Parent=Os12t0552400-01
Chr12	irgsp1_rep	CDS	22428742	22428830	.	-	2	Parent=Os12t0552400-01
Chr12	irgsp1_rep	CDS	22428512	22428633	.	-	0	Parent=Os12t0552400-01
Chr12	irgsp1_rep	CDS	22428186	22428279	.	-	1	Parent=Os12t0552400-01
Chr12	irgsp1_rep	three_prime_UTR	22427863	22428185	.	-	.	Parent=Os12t0552400-01
Chr12	irgsp1_rep	mRNA	22429432	22431789	.	-	.	ID=Os12t0552500-01;Name=Os12t0552500-01;Locus_id=Os12g0552500;Note=Rossmann-like alpha/beta/alpha sandwich fold domain containing protein.;Transcript_evidence=AK066459 (DDBJ%2C Best hit);ORF_evidence=NP_001150162.1 (RefSeq);GO=Biological Process: response to stress (GO:0006950);InterPro=Universal stress protein A (IPR006015),UspA (IPR006016),Rossmann-like alpha/beta/alpha sandwich fold (IPR014729);NIAS_FLcDNA=J013066N15;Expression=AK066459;TENOR=Os12t0552500-01;KEGG=Os12t0552500-01
Chr12	irgsp1_rep	five_prime_UTR	22431749	22431789	.	-	.	Parent=Os12t0552500-01
Chr12	irgsp1_rep	CDS	22431538	22431748	.	-	0	Parent=Os12t0552500-01
Chr12	irgsp1_rep	CDS	22431359	22431447	.	-	2	Parent=Os12t0552500-01
Chr12	irgsp1_rep	CDS	22430611	22430732	.	-	0	Parent=Os12t0552500-01
Chr12	irgsp1_rep	CDS	22429727	22429814	.	-	1	Parent=Os12t0552500-01
Chr12	irgsp1_rep	three_prime_UTR	22429432	22429726	.	-	.	Parent=Os12t0552500-01
Chr12	irgsp1_rep	mRNA	22429631	22431733	.	+	.	ID=Os12t0552550-00;Name=Os12t0552550-00;Locus_id=Os12g0552550;Note=Hypothetical gene.;Transcript_evidence=BT016471 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0552550-00;KEGG=Os12t0552550-00
Chr12	irgsp1_rep	CDS	22429631	22429813	.	+	0	Parent=Os12t0552550-00
Chr12	irgsp1_rep	CDS	22430610	22430726	.	+	0	Parent=Os12t0552550-00
Chr12	irgsp1_rep	CDS	22431353	22431458	.	+	0	Parent=Os12t0552550-00
Chr12	irgsp1_rep	CDS	22431551	22431585	.	+	2	Parent=Os12t0552550-00
Chr12	irgsp1_rep	three_prime_UTR	22431586	22431733	.	+	.	Parent=Os12t0552550-00
Chr12	irgsp1_rep	mRNA	22447830	22449052	.	-	.	ID=Os12t0552575-00;Name=Os12t0552575-00;Locus_id=Os12g0552575;Note=Hypothetical protein.;Transcript_evidence=AK362314 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0552575-00
Chr12	irgsp1_rep	five_prime_UTR	22448946	22449052	.	-	.	Parent=Os12t0552575-00
Chr12	irgsp1_rep	CDS	22448562	22448945	.	-	0	Parent=Os12t0552575-00
Chr12	irgsp1_rep	three_prime_UTR	22447830	22448561	.	-	.	Parent=Os12t0552575-00
Chr12	irgsp1_rep	mRNA	22447769	22449195	.	+	.	ID=Os12t0552600-00;Name=Os12t0552600-00;Locus_id=Os12g0552600;Note=Similar to MATE efflux family protein.;Transcript_evidence=EU955386 (DDBJ);ORF_evidence=Q2QNV0 (UniProt);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);TENOR=Os12t0552600-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	22447769	22447776	.	+	.	Parent=Os12t0552600-00
Chr12	irgsp1_rep	CDS	22447777	22449195	.	+	0	Parent=Os12t0552600-00
Chr12	irgsp1_rep	mRNA	22459823	22461947	.	+	.	ID=Os12t0552700-01;Name=Os12t0552700-01;Locus_id=Os12g0552700;Note=Similar to Leucine Rich Repeat family protein%2C expressed.;Transcript_evidence=AK060492 (DDBJ%2C Best hit);ORF_evidence=Q2QNU9 (UniProt);InterPro=Leucine-rich repeat%2C cysteine-containing subtype (IPR006553);NIAS_FLcDNA=001-016-C10;TENOR=Os12t0552700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	22459823	22459852	.	+	0	Parent=Os12t0552700-01
Chr12	irgsp1_rep	CDS	22460009	22460405	.	+	0	Parent=Os12t0552700-01
Chr12	irgsp1_rep	CDS	22460503	22460632	.	+	2	Parent=Os12t0552700-01
Chr12	irgsp1_rep	CDS	22460717	22461011	.	+	1	Parent=Os12t0552700-01
Chr12	irgsp1_rep	CDS	22461095	22461364	.	+	0	Parent=Os12t0552700-01
Chr12	irgsp1_rep	three_prime_UTR	22461365	22461947	.	+	.	Parent=Os12t0552700-01
Chr12	irgsp1_rep	mRNA	22466362	22469274	.	+	.	ID=Os12t0552800-01;Name=Os12t0552800-01;Locus_id=Os12g0552800;Note=Conserved hypothetical protein.;Transcript_evidence=AK069589 (DDBJ%2C Best hit);ORF_evidence=A3CIA8 (UniProt);NIAS_FLcDNA=J023022C08;Oryzabase=20217;Expression=AK069589;TENOR=Os12t0552800-01;KEGG=Os12t0552800-01
Chr12	irgsp1_rep	five_prime_UTR	22466362	22466494	.	+	.	Parent=Os12t0552800-01
Chr12	irgsp1_rep	CDS	22466495	22466754	.	+	0	Parent=Os12t0552800-01
Chr12	irgsp1_rep	CDS	22466865	22466910	.	+	1	Parent=Os12t0552800-01
Chr12	irgsp1_rep	CDS	22467030	22467104	.	+	0	Parent=Os12t0552800-01
Chr12	irgsp1_rep	CDS	22467205	22467291	.	+	0	Parent=Os12t0552800-01
Chr12	irgsp1_rep	CDS	22467436	22467507	.	+	0	Parent=Os12t0552800-01
Chr12	irgsp1_rep	CDS	22467626	22467697	.	+	0	Parent=Os12t0552800-01
Chr12	irgsp1_rep	CDS	22467807	22467878	.	+	0	Parent=Os12t0552800-01
Chr12	irgsp1_rep	CDS	22468003	22468869	.	+	0	Parent=Os12t0552800-01
Chr12	irgsp1_rep	three_prime_UTR	22468870	22469274	.	+	.	Parent=Os12t0552800-01
Chr12	irgsp1_rep	mRNA	22477070	22481284	.	-	.	ID=Os12t0552900-01;Name=Os12t0552900-01;Locus_id=Os12g0552900;Note=NB-ARC domain containing protein.;Transcript_evidence=AK101637 (DDBJ%2C Best hit);ORF_evidence=Q2QNU3 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J033055C04;Expression=AK101637;TENOR=Os12t0552900-01;KEGG=Os12t0552900-01
Chr12	irgsp1_rep	five_prime_UTR	22481143	22481284	.	-	.	Parent=Os12t0552900-01
Chr12	irgsp1_rep	five_prime_UTR	22480914	22480984	.	-	.	Parent=Os12t0552900-01
Chr12	irgsp1_rep	CDS	22480111	22480913	.	-	0	Parent=Os12t0552900-01
Chr12	irgsp1_rep	CDS	22477355	22479308	.	-	1	Parent=Os12t0552900-01
Chr12	irgsp1_rep	three_prime_UTR	22477070	22477354	.	-	.	Parent=Os12t0552900-01
Chr12	irgsp1_rep	mRNA	22482406	22486169	.	+	.	ID=Os12t0553050-00;Name=Os12t0553050-00;Locus_id=Os12g0553050;Note=Hypothetical protein.;Transcript_evidence=FP096206 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0553050-00
Chr12	irgsp1_rep	five_prime_UTR	22482406	22482449	.	+	.	Parent=Os12t0553050-00
Chr12	irgsp1_rep	CDS	22482450	22482520	.	+	0	Parent=Os12t0553050-00
Chr12	irgsp1_rep	CDS	22485823	22486169	.	+	1	Parent=Os12t0553050-00
Chr12	irgsp1_rep	mRNA	22488914	22492254	.	-	.	ID=Os12t0553200-01;Name=Os12t0553200-01;Locus_id=Os12g0553200;Note=NB-ARC domain containing protein.;Transcript_evidence=AK070342 (DDBJ%2C Best hit);ORF_evidence=Q2QNU3 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J023051A21;Expression=AK070342;TENOR=Os12t0553200-01;KEGG=Os12t0553200-01
Chr12	irgsp1_rep	five_prime_UTR	22492172	22492254	.	-	.	Parent=Os12t0553200-01
Chr12	irgsp1_rep	five_prime_UTR	22491821	22491844	.	-	.	Parent=Os12t0553200-01
Chr12	irgsp1_rep	CDS	22491018	22491820	.	-	0	Parent=Os12t0553200-01
Chr12	irgsp1_rep	CDS	22488945	22490601	.	-	1	Parent=Os12t0553200-01
Chr12	irgsp1_rep	three_prime_UTR	22488914	22488944	.	-	.	Parent=Os12t0553200-01
Chr12	irgsp1_rep	mRNA	22497610	22502497	.	-	.	ID=Os12t0553600-01;Name=Os12t0553600-01;Locus_id=Os12g0553600;Note=Similar to NB-ARC domain containing protein.;Transcript_evidence=AK287448 (DDBJ%2C Best hit);ORF_evidence=Q2QNU3 (UniProt);NIAS_FLcDNA=J043016O18;TENOR=Os12t0553600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	22502252	22502497	.	-	.	Parent=Os12t0553600-01
Chr12	irgsp1_rep	five_prime_UTR	22501902	22501925	.	-	.	Parent=Os12t0553600-01
Chr12	irgsp1_rep	CDS	22501422	22501901	.	-	0	Parent=Os12t0553600-01
Chr12	irgsp1_rep	three_prime_UTR	22501099	22501421	.	-	.	Parent=Os12t0553600-01
Chr12	irgsp1_rep	three_prime_UTR	22498728	22500682	.	-	.	Parent=Os12t0553600-01
Chr12	irgsp1_rep	three_prime_UTR	22497610	22497947	.	-	.	Parent=Os12t0553600-01
Chr12	irgsp1_rep	mRNA	22505365	22505929	.	+	.	ID=Os12t0553800-00;Name=Os12t0553800-00;Locus_id=Os12g0553800;Note=Hypothetical gene.;Transcript_evidence=CT835524 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os12t0553800-00;KEGG=Os12t0553800-00
Chr12	irgsp1_rep	five_prime_UTR	22505365	22505514	.	+	.	Parent=Os12t0553800-00
Chr12	irgsp1_rep	CDS	22505515	22505853	.	+	0	Parent=Os12t0553800-00
Chr12	irgsp1_rep	three_prime_UTR	22505854	22505929	.	+	.	Parent=Os12t0553800-00
Chr12	irgsp1_rep	mRNA	22507721	22510576	.	+	.	ID=Os12t0554000-01;Name=Os12t0554000-01;Locus_id=Os12g0554000;Note=Similar to Splicing factor%2C arginine/serine-rich 12.;Transcript_evidence=AK241836 (DDBJ%2C Best hit);ORF_evidence=B6T8W4 (UniProt);NIAS_FLcDNA=J065213I02;TENOR=Os12t0554000-01;KEGG=Os12t0554000-01
Chr12	irgsp1_rep	five_prime_UTR	22507721	22507767	.	+	.	Parent=Os12t0554000-01
Chr12	irgsp1_rep	CDS	22507768	22508025	.	+	0	Parent=Os12t0554000-01
Chr12	irgsp1_rep	CDS	22509207	22509281	.	+	0	Parent=Os12t0554000-01
Chr12	irgsp1_rep	CDS	22509378	22509440	.	+	0	Parent=Os12t0554000-01
Chr12	irgsp1_rep	CDS	22509830	22509874	.	+	0	Parent=Os12t0554000-01
Chr12	irgsp1_rep	CDS	22509957	22510013	.	+	0	Parent=Os12t0554000-01
Chr12	irgsp1_rep	CDS	22510268	22510360	.	+	0	Parent=Os12t0554000-01
Chr12	irgsp1_rep	three_prime_UTR	22510361	22510576	.	+	.	Parent=Os12t0554000-01
Chr12	irgsp1_rep	mRNA	22511573	22514769	.	-	.	ID=Os12t0554100-01;Name=Os12t0554100-01;Locus_id=Os12g0554100;Oryzabase Gene Symbol Synonym(s)=OsTBL34%2C TBL34;Oryzabase Gene Name Synonym(s)=trichome birefringence-like 34;Note=Conserved hypothetical protein.;Transcript_evidence=AK069357 (DDBJ%2C Best hit);ORF_evidence=B9GDP4 (UniProt);NIAS_FLcDNA=J023013F17;Oryzabase=21489;TENOR=Os12t0554100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	22514742	22514769	.	-	.	Parent=Os12t0554100-01
Chr12	irgsp1_rep	five_prime_UTR	22513646	22514621	.	-	.	Parent=Os12t0554100-01
Chr12	irgsp1_rep	CDS	22513435	22513645	.	-	0	Parent=Os12t0554100-01
Chr12	irgsp1_rep	CDS	22513150	22513332	.	-	2	Parent=Os12t0554100-01
Chr12	irgsp1_rep	CDS	22512711	22512906	.	-	2	Parent=Os12t0554100-01
Chr12	irgsp1_rep	CDS	22512582	22512603	.	-	1	Parent=Os12t0554100-01
Chr12	irgsp1_rep	three_prime_UTR	22511573	22512581	.	-	.	Parent=Os12t0554100-01
Chr12	irgsp1_rep	mRNA	22518089	22518639	.	+	.	ID=Os12t0554300-01;Name=Os12t0554300-01;Locus_id=Os12g0554300;Note=Non-protein coding transcript.;Transcript_evidence=AK058250 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-012-B11;TENOR=Os12t0554300-01
Chr12	irgsp1_rep	exon	22518089	22518639	.	+	.	Parent=Os12t0554300-01
Chr12	irgsp1_rep	mRNA	22519016	22529230	.	-	.	ID=Os12t0554400-01;Name=Os12t0554400-01;Locus_id=Os12g0554400;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK072345 (DDBJ%2C Best hit);ORF_evidence=B9GDP5 (UniProt);InterPro=Foie gras liver health family 1 (IPR021773),TRAPP II complex%2C TRAPPC10 (IPR022233);NIAS_FLcDNA=J023049N15;Expression=AK072345;TENOR=Os12t0554400-01;KEGG=Os12t0554400-01
Chr12	irgsp1_rep	five_prime_UTR	22529045	22529230	.	-	.	Parent=Os12t0554400-01
Chr12	irgsp1_rep	CDS	22528981	22529044	.	-	0	Parent=Os12t0554400-01
Chr12	irgsp1_rep	CDS	22528216	22528445	.	-	2	Parent=Os12t0554400-01
Chr12	irgsp1_rep	CDS	22527915	22528096	.	-	0	Parent=Os12t0554400-01
Chr12	irgsp1_rep	CDS	22527484	22527667	.	-	1	Parent=Os12t0554400-01
Chr12	irgsp1_rep	CDS	22527266	22527356	.	-	0	Parent=Os12t0554400-01
Chr12	irgsp1_rep	CDS	22526414	22526574	.	-	2	Parent=Os12t0554400-01
Chr12	irgsp1_rep	CDS	22525752	22525841	.	-	0	Parent=Os12t0554400-01
Chr12	irgsp1_rep	CDS	22525489	22525650	.	-	0	Parent=Os12t0554400-01
Chr12	irgsp1_rep	CDS	22524205	22524266	.	-	0	Parent=Os12t0554400-01
Chr12	irgsp1_rep	CDS	22523932	22524022	.	-	1	Parent=Os12t0554400-01
Chr12	irgsp1_rep	CDS	22523266	22523417	.	-	0	Parent=Os12t0554400-01
Chr12	irgsp1_rep	CDS	22522931	22523147	.	-	1	Parent=Os12t0554400-01
Chr12	irgsp1_rep	CDS	22522232	22522777	.	-	0	Parent=Os12t0554400-01
Chr12	irgsp1_rep	CDS	22521816	22522028	.	-	0	Parent=Os12t0554400-01
Chr12	irgsp1_rep	CDS	22521268	22521652	.	-	0	Parent=Os12t0554400-01
Chr12	irgsp1_rep	CDS	22521051	22521141	.	-	2	Parent=Os12t0554400-01
Chr12	irgsp1_rep	CDS	22520858	22520942	.	-	1	Parent=Os12t0554400-01
Chr12	irgsp1_rep	CDS	22520570	22520753	.	-	0	Parent=Os12t0554400-01
Chr12	irgsp1_rep	CDS	22519834	22520114	.	-	2	Parent=Os12t0554400-01
Chr12	irgsp1_rep	CDS	22519580	22519670	.	-	0	Parent=Os12t0554400-01
Chr12	irgsp1_rep	CDS	22519278	22519453	.	-	2	Parent=Os12t0554400-01
Chr12	irgsp1_rep	three_prime_UTR	22519016	22519277	.	-	.	Parent=Os12t0554400-01
Chr12	irgsp1_rep	mRNA	22518982	22521554	.	-	.	ID=Os12t0554400-02;Name=Os12t0554400-02;Locus_id=Os12g0554400;Note=Similar to predicted protein.;Transcript_evidence=AK104059 (DDBJ%2C Best hit);ORF_evidence=B9GDP5 (UniProt);InterPro=TRAPP II complex%2C TRAPPC10 (IPR022233);NIAS_FLcDNA=001-024-F12;Expression=AK104059;TENOR=Os12t0554400-02;KEGG=Os12t0554400-02
Chr12	irgsp1_rep	five_prime_UTR	22521554	22521554	.	-	.	Parent=Os12t0554400-02
Chr12	irgsp1_rep	CDS	22521268	22521553	.	-	0	Parent=Os12t0554400-02
Chr12	irgsp1_rep	CDS	22521051	22521141	.	-	2	Parent=Os12t0554400-02
Chr12	irgsp1_rep	CDS	22520858	22520942	.	-	1	Parent=Os12t0554400-02
Chr12	irgsp1_rep	CDS	22520570	22520753	.	-	0	Parent=Os12t0554400-02
Chr12	irgsp1_rep	CDS	22519834	22520114	.	-	2	Parent=Os12t0554400-02
Chr12	irgsp1_rep	CDS	22519580	22519670	.	-	0	Parent=Os12t0554400-02
Chr12	irgsp1_rep	CDS	22519278	22519453	.	-	2	Parent=Os12t0554400-02
Chr12	irgsp1_rep	three_prime_UTR	22518982	22519277	.	-	.	Parent=Os12t0554400-02
Chr12	irgsp1_rep	mRNA	22530250	22535023	.	-	.	ID=Os12t0554500-00;Name=Os12t0554500-00;Locus_id=Os12g0554500;Note=Lipase%2C class 3 family protein.;Transcript_evidence=EU957754 (DDBJ);ORF_evidence=Q2QNT9 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: lipid catabolic process (GO:0016042),Molecular Function: carboxylesterase activity (GO:0004091),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921),Mono-/di-acylglycerol lipase%2C N-terminal (IPR005592);TENOR=Os12t0554500-00;KEGG=Os12t0554500-00
Chr12	irgsp1_rep	five_prime_UTR	22534993	22535023	.	-	.	Parent=Os12t0554500-00
Chr12	irgsp1_rep	CDS	22534648	22534992	.	-	0	Parent=Os12t0554500-00
Chr12	irgsp1_rep	CDS	22533447	22533638	.	-	0	Parent=Os12t0554500-00
Chr12	irgsp1_rep	CDS	22533061	22533333	.	-	0	Parent=Os12t0554500-00
Chr12	irgsp1_rep	CDS	22532155	22532257	.	-	0	Parent=Os12t0554500-00
Chr12	irgsp1_rep	CDS	22531623	22531741	.	-	2	Parent=Os12t0554500-00
Chr12	irgsp1_rep	CDS	22531265	22531432	.	-	0	Parent=Os12t0554500-00
Chr12	irgsp1_rep	CDS	22530542	22531174	.	-	0	Parent=Os12t0554500-00
Chr12	irgsp1_rep	three_prime_UTR	22530250	22530541	.	-	.	Parent=Os12t0554500-00
Chr12	irgsp1_rep	mRNA	22573093	22576210	.	+	.	ID=Os12t0554800-01;Name=Os12t0554800-01;Locus_id=Os12g0554800;Oryzabase Gene Symbol Synonym(s)=OsPGL33%2C PGL33;Oryzabase Gene Name Synonym(s)=Polygalacturonases-Like 33%2C PG-like 33;Note=Similar to Polygalacturonase-like protein.;Transcript_evidence=AK105676 (DDBJ%2C Best hit);ORF_evidence=NP_001148987.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: polygalacturonase activity (GO:0004650);InterPro=Glycoside hydrolase%2C family 28 (IPR000743),Parallel beta-helix repeat (IPR006626),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334);NIAS_FLcDNA=001-201-A12;Oryzabase=22310;Expression=AK105676;TENOR=Os12t0554800-01;KEGG=Os12t0554800-01
Chr12	irgsp1_rep	five_prime_UTR	22573093	22573093	.	+	.	Parent=Os12t0554800-01
Chr12	irgsp1_rep	CDS	22573094	22573330	.	+	0	Parent=Os12t0554800-01
Chr12	irgsp1_rep	CDS	22574180	22574300	.	+	0	Parent=Os12t0554800-01
Chr12	irgsp1_rep	CDS	22574400	22574574	.	+	2	Parent=Os12t0554800-01
Chr12	irgsp1_rep	CDS	22574661	22574731	.	+	1	Parent=Os12t0554800-01
Chr12	irgsp1_rep	CDS	22575113	22575783	.	+	2	Parent=Os12t0554800-01
Chr12	irgsp1_rep	three_prime_UTR	22575784	22576210	.	+	.	Parent=Os12t0554800-01
Chr12	irgsp1_rep	mRNA	22580880	22581936	.	+	.	ID=Os12t0555000-01;Name=Os12t0555000-01;Locus_id=Os12g0555000;CGSNL Gene Symbol=RSOSPR10;CGSNL Gene Name=ROOT-SPECIFIC ORYZA SATIVA PR10;Oryzabase Gene Symbol Synonym(s)=RSOsPR10%2C RsOsPR10a%2C OsPR10a%2C OsPR10alpha%2C OsPR10%2C PR10;Oryzabase Gene Name Synonym(s)=root-specific Oryza sativa PR10%2C root specific rice PR10%2C root-specific OsPR10a%2C Root specific pathogenesis-related protein 10;Note=Similar to Probenazole-inducible protein PBZ1.;Transcript_evidence=AK061606 (DDBJ%2C Best hit);ORF_evidence=B8BMF9 (UniProt);GO=Biological Process: defense response (GO:0006952),Biological Process: response to biotic stimulus (GO:0009607);InterPro=Bet v I allergen (IPR000916),START-like domain (IPR023393);NIAS_FLcDNA=001-030-C06;Oryzabase=10474;Expression=AK061606;TENOR=Os12t0555000-01;KEGG=Os12t0555000-01
Chr12	irgsp1_rep	five_prime_UTR	22580880	22580959	.	+	.	Parent=Os12t0555000-01
Chr12	irgsp1_rep	CDS	22580960	22581134	.	+	0	Parent=Os12t0555000-01
Chr12	irgsp1_rep	CDS	22581432	22581739	.	+	2	Parent=Os12t0555000-01
Chr12	irgsp1_rep	three_prime_UTR	22581740	22581936	.	+	.	Parent=Os12t0555000-01
Chr12	irgsp1_rep	mRNA	22585181	22586562	.	+	.	ID=Os12t0555100-01;Name=Os12t0555100-01;Locus_id=Os12g0555100;Note=Similar to Probenazole-inducible protein PBZ1.;Transcript_evidence=AK243488 (DDBJ%2C Best hit);ORF_evidence=B8BMF9 (UniProt);GO=Biological Process: defense response (GO:0006952),Biological Process: response to biotic stimulus (GO:0009607);InterPro=Bet v I allergen (IPR000916),START-like domain (IPR023393);NIAS_FLcDNA=J100073M08;TENOR=Os12t0555100-01;KEGG=Os12t0555100-01
Chr12	irgsp1_rep	five_prime_UTR	22585181	22585279	.	+	.	Parent=Os12t0555100-01
Chr12	irgsp1_rep	CDS	22585280	22585454	.	+	0	Parent=Os12t0555100-01
Chr12	irgsp1_rep	CDS	22585989	22586290	.	+	2	Parent=Os12t0555100-01
Chr12	irgsp1_rep	three_prime_UTR	22586291	22586562	.	+	.	Parent=Os12t0555100-01
Chr12	irgsp1_rep	mRNA	22591681	22593505	.	+	.	ID=Os12t0555200-01;Name=Os12t0555200-01;Locus_id=Os12g0555200;CGSNL Gene Symbol=PR10B;CGSNL Gene Name=PATHOGENESIS-RELATED GENE 10B;Oryzabase Gene Symbol Synonym(s)=RPR10b%2C PR-10b%2C PR10b%2C PBZ1%2C PBZ-1%2C OsPBZc%2C OsPR10b%2C BetV%2C OsBetV;Oryzabase Gene Name Synonym(s)=pathogenesis-related gene 10b%2C pathogenesis-related protein PR-10b%2C PROBENAZOLE INDUCED PROTEIN1;Note=Similar to Probenazole-inducible protein PBZ1.;Transcript_evidence=AK070762 (DDBJ%2C Best hit),AK099157 (DDBJ%2C Best hit);ORF_evidence=Q9LKJ8 (UniProt);GO=Biological Process: defense response (GO:0006952),Biological Process: response to biotic stimulus (GO:0009607);InterPro=Bet v I allergen (IPR000916),START-like domain (IPR023393);NIAS_FLcDNA=J023064O19,J023064O18;Oryzabase=10240;Expression=AK099157;TENOR=Os12t0555200-01;KEGG=Os12t0555200-01
Chr12	irgsp1_rep	five_prime_UTR	22591681	22591755	.	+	.	Parent=Os12t0555200-01
Chr12	irgsp1_rep	CDS	22591756	22591930	.	+	0	Parent=Os12t0555200-01
Chr12	irgsp1_rep	CDS	22592950	22593251	.	+	2	Parent=Os12t0555200-01
Chr12	irgsp1_rep	three_prime_UTR	22593252	22593505	.	+	.	Parent=Os12t0555200-01
Chr12	irgsp1_rep	mRNA	22595531	22596804	.	+	.	ID=Os12t0555300-00;Name=Os12t0555300-00;Locus_id=Os12g0555300;Oryzabase Gene Symbol Synonym(s)=PR10;Oryzabase Gene Name Synonym(s)=pathogenesis-related gene 10;Note=Similar to Pathogenesis-related protein PR-10a.;Transcript_evidence=ab initio prediction;ORF_evidence=Q9LKJ9 (UniProt);GO=Biological Process: defense response (GO:0006952),Biological Process: response to biotic stimulus (GO:0009607);InterPro=Bet v I allergen (IPR000916),START-like domain (IPR023393);Oryzabase=15201;TENOR=Os12t0555300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	22595531	22595636	.	+	0	Parent=Os12t0555300-00
Chr12	irgsp1_rep	CDS	22596503	22596804	.	+	2	Parent=Os12t0555300-00
Chr12	irgsp1_rep	mRNA	22597827	22598994	.	+	.	ID=Os12t0555400-01;Name=Os12t0555400-01;Locus_id=Os12g0555400;Note=Similar to Raffinose synthase protein.;Transcript_evidence=AK061098 (DDBJ%2C Best hit);ORF_evidence=Q40077 (UniProt);InterPro=Raffinose synthase (IPR008811);NIAS_FLcDNA=006-207-A08;Oryzabase=15277;Expression=AK061098;TENOR=Os12t0555400-01;KEGG=Os12t0555400-01
Chr12	irgsp1_rep	five_prime_UTR	22597827	22597827	.	+	.	Parent=Os12t0555400-01
Chr12	irgsp1_rep	CDS	22597828	22598210	.	+	0	Parent=Os12t0555400-01
Chr12	irgsp1_rep	CDS	22598364	22598577	.	+	1	Parent=Os12t0555400-01
Chr12	irgsp1_rep	three_prime_UTR	22598578	22598994	.	+	.	Parent=Os12t0555400-01
Chr12	irgsp1_rep	mRNA	22600049	22601182	.	+	.	ID=Os12t0555500-01;Name=Os12t0555500-01;Locus_id=Os12g0555500;RAP-DB Gene Symbol Synonym(s)=OsPR10a%2C PBZ1;RAP-DB Gene Name Synonym(s)=pathogenesis-related gene 10a%2C Probenazole1;CGSNL Gene Symbol=PR10A;CGSNL Gene Name=PATHOGENESIS-RELATED GENE 10A;Oryzabase Gene Symbol Synonym(s)=PBZ1%2C OsPR10a%2C RPR10a%2C PR-10a%2C PR10a%2C PR10%2C OsPR10A%2C OsPR-10a%2C OsPR10%2C PR10/PBZ1%2C OsPBZ1%2C OsPR10a/PBZ1;Oryzabase Gene Name Synonym(s)=Probenazole1%2C probezanole 1%2C probenazole-inducible 1%2C pathogenesis-related gene 10a%2C pathogenesis-related protein PR-10a%2C PR protein 10a%2C pathogenesis-related (PR) 10a%2C probenazole induced protein 1;Note=Pathogen resistance protein PBZ1%2C 17 kDa RNase%2C Disease resistance;Transcript_evidence=AK071613;ORF_evidence=Q2QNS7;GO=Biological Process: defense response (GO:0006952),Biological Process: response to biotic stimulus (GO:0009607);InterPro=START-like domain superfamily (IPR023393),Bet v I type allergen (IPR024949),Bet v I/Major latex protein (IPR000916);NIAS_FLcDNA=J023104B18;Manual Curation=March 2%2C 2018;Literature_PMID=29321675,27258121;Oryzabase=10239;Expression=AK071613;TENOR=Os12t0555500-01;KEGG=Os12t0555500-01
Chr12	irgsp1_rep	five_prime_UTR	22600049	22600147	.	+	.	Parent=Os12t0555500-01
Chr12	irgsp1_rep	CDS	22600148	22600322	.	+	0	Parent=Os12t0555500-01
Chr12	irgsp1_rep	CDS	22600644	22600945	.	+	2	Parent=Os12t0555500-01
Chr12	irgsp1_rep	three_prime_UTR	22600946	22601182	.	+	.	Parent=Os12t0555500-01
Chr12	irgsp1_rep	mRNA	22602934	22607307	.	-	.	ID=Os12t0555600-01;Name=Os12t0555600-01;Locus_id=Os12g0555600;RAP-DB Gene Symbol Synonym(s)=ND1%2C CSLD4%2C OsCSLD4%2C OsCD1%2C CD1;RAP-DB Gene Name Synonym(s)=NARROW LEAF AND DWARF 1%2C CURLED LEAF AND DWARF 1;CGSNL Gene Symbol=ND1;CGSNL Gene Name=NARROW LEAF AND DWARF 1;Oryzabase Gene Symbol Synonym(s)=CSLD4%2C OsCSLD4%2C OsCD1%2C CD1%2C DNL3%2C NRL1;Oryzabase Gene Name Synonym(s)=CURLED LEAF AND DWARF 1%2C Dwarf and narrow-leaf 3%2C narrow and rolled leaf 1;Note=Cellulose synthase-like protein%2C Cell wall biosynthesis;Transcript_evidence=AK242601 (Genbank);ORF_evidence=Q2QNS6 (UniProt);GO=Biological Process: cellulose biosynthetic process (GO:0030244),Cellular Component: membrane (GO:0016020),Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);InterPro=Cellulose synthase (IPR005150),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J090014G03;Manual Curation=January 15%2C 2010;Literature_PMID=11842136,19765235;Oryzabase=9012;TENOR=Os12t0555600-01;KEGG=Os12t0555600-01
Chr12	irgsp1_rep	five_prime_UTR	22607094	22607307	.	-	.	Parent=Os12t0555600-01
Chr12	irgsp1_rep	CDS	22606114	22607093	.	-	0	Parent=Os12t0555600-01
Chr12	irgsp1_rep	CDS	22603194	22605861	.	-	1	Parent=Os12t0555600-01
Chr12	irgsp1_rep	three_prime_UTR	22602934	22603193	.	-	.	Parent=Os12t0555600-01
Chr12	irgsp1_rep	mRNA	22616905	22621949	.	-	.	ID=Os12t0555901-00;Name=Os12t0555901-00;Locus_id=Os12g0555901;Note=Hypothetical gene.;Transcript_evidence=BT019144 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0555901-00
Chr12	irgsp1_rep	five_prime_UTR	22621602	22621949	.	-	.	Parent=Os12t0555901-00
Chr12	irgsp1_rep	five_prime_UTR	22621037	22621296	.	-	.	Parent=Os12t0555901-00
Chr12	irgsp1_rep	five_prime_UTR	22619956	22619963	.	-	.	Parent=Os12t0555901-00
Chr12	irgsp1_rep	CDS	22619911	22619955	.	-	0	Parent=Os12t0555901-00
Chr12	irgsp1_rep	CDS	22617164	22617355	.	-	0	Parent=Os12t0555901-00
Chr12	irgsp1_rep	CDS	22616905	22617067	.	-	0	Parent=Os12t0555901-00
Chr12	irgsp1_rep	mRNA	22616804	22622177	.	+	.	ID=Os12t0556100-01;Name=Os12t0556100-01;Locus_id=Os12g0556100;Oryzabase Gene Symbol Synonym(s)=OsDi19-7;Oryzabase Gene Name Synonym(s)=drought-induced 19-7;Note=Similar to fiber protein Fb2.;Transcript_evidence=AK243257 (DDBJ%2C Best hit);ORF_evidence=NP_001150479.1 (RefSeq);InterPro=Drought induced 19/ RING finger protein 114 (IPR008598);NIAS_FLcDNA=J100048N01;Oryzabase=18582;TENOR=Os12t0556100-01;KEGG=Os12t0556100-01
Chr12	irgsp1_rep	five_prime_UTR	22616804	22616999	.	+	.	Parent=Os12t0556100-01
Chr12	irgsp1_rep	CDS	22617000	22617060	.	+	0	Parent=Os12t0556100-01
Chr12	irgsp1_rep	CDS	22617186	22617334	.	+	2	Parent=Os12t0556100-01
Chr12	irgsp1_rep	CDS	22619893	22619970	.	+	0	Parent=Os12t0556100-01
Chr12	irgsp1_rep	CDS	22621047	22621312	.	+	0	Parent=Os12t0556100-01
Chr12	irgsp1_rep	CDS	22621608	22621710	.	+	1	Parent=Os12t0556100-01
Chr12	irgsp1_rep	three_prime_UTR	22621711	22622177	.	+	.	Parent=Os12t0556100-01
Chr12	irgsp1_rep	mRNA	22628910	22632952	.	+	.	ID=Os12t0556200-01;Name=Os12t0556200-01;Locus_id=Os12g0556200;Note=Calmodulin binding protein-like family protein.;Transcript_evidence=AK102354 (DDBJ%2C Best hit);ORF_evidence=A2ZLJ8 (UniProt);InterPro=Calmodulin binding protein-like (IPR012416);NIAS_FLcDNA=J033091G14;Expression=AK102354;TENOR=Os12t0556200-01;KEGG=Os12t0556200-01
Chr12	irgsp1_rep	five_prime_UTR	22628910	22629015	.	+	.	Parent=Os12t0556200-01
Chr12	irgsp1_rep	CDS	22629016	22629092	.	+	0	Parent=Os12t0556200-01
Chr12	irgsp1_rep	CDS	22629202	22629289	.	+	1	Parent=Os12t0556200-01
Chr12	irgsp1_rep	CDS	22630232	22630284	.	+	0	Parent=Os12t0556200-01
Chr12	irgsp1_rep	CDS	22630426	22630901	.	+	1	Parent=Os12t0556200-01
Chr12	irgsp1_rep	CDS	22631004	22631164	.	+	2	Parent=Os12t0556200-01
Chr12	irgsp1_rep	CDS	22631248	22631445	.	+	0	Parent=Os12t0556200-01
Chr12	irgsp1_rep	CDS	22631683	22631890	.	+	0	Parent=Os12t0556200-01
Chr12	irgsp1_rep	CDS	22631991	22632115	.	+	2	Parent=Os12t0556200-01
Chr12	irgsp1_rep	CDS	22632256	22632439	.	+	0	Parent=Os12t0556200-01
Chr12	irgsp1_rep	CDS	22632543	22632703	.	+	2	Parent=Os12t0556200-01
Chr12	irgsp1_rep	three_prime_UTR	22632704	22632952	.	+	.	Parent=Os12t0556200-01
Chr12	irgsp1_rep	mRNA	22632656	22632918	.	+	.	ID=Os12t0556200-02;Name=Os12t0556200-02;Locus_id=Os12g0556200;Note=Non-protein coding transcript.;Transcript_evidence=AK058825 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-003-H04;TENOR=Os12t0556200-02
Chr12	irgsp1_rep	exon	22632656	22632918	.	+	.	Parent=Os12t0556200-02
Chr12	irgsp1_rep	mRNA	22635834	22640197	.	+	.	ID=Os12t0556300-01;Name=Os12t0556300-01;Locus_id=Os12g0556300;Note=Calmodulin binding protein-like family protein.;Transcript_evidence=AK121900 (DDBJ%2C Best hit);ORF_evidence=A2ZLJ9 (UniProt);InterPro=Calmodulin binding protein-like (IPR012416);NIAS_FLcDNA=J033105G16;Expression=AK121900;TENOR=Os12t0556300-01;KEGG=Os12t0556300-01
Chr12	irgsp1_rep	five_prime_UTR	22635834	22635915	.	+	.	Parent=Os12t0556300-01
Chr12	irgsp1_rep	CDS	22635916	22636115	.	+	0	Parent=Os12t0556300-01
Chr12	irgsp1_rep	CDS	22636227	22636275	.	+	1	Parent=Os12t0556300-01
Chr12	irgsp1_rep	CDS	22636979	22637016	.	+	0	Parent=Os12t0556300-01
Chr12	irgsp1_rep	CDS	22637336	22637417	.	+	1	Parent=Os12t0556300-01
Chr12	irgsp1_rep	CDS	22637505	22637554	.	+	0	Parent=Os12t0556300-01
Chr12	irgsp1_rep	CDS	22637740	22638206	.	+	1	Parent=Os12t0556300-01
Chr12	irgsp1_rep	CDS	22638351	22638514	.	+	2	Parent=Os12t0556300-01
Chr12	irgsp1_rep	CDS	22638601	22638807	.	+	0	Parent=Os12t0556300-01
Chr12	irgsp1_rep	CDS	22638913	22639069	.	+	0	Parent=Os12t0556300-01
Chr12	irgsp1_rep	CDS	22639217	22639324	.	+	2	Parent=Os12t0556300-01
Chr12	irgsp1_rep	CDS	22639520	22639593	.	+	2	Parent=Os12t0556300-01
Chr12	irgsp1_rep	CDS	22639723	22639920	.	+	0	Parent=Os12t0556300-01
Chr12	irgsp1_rep	three_prime_UTR	22639921	22640197	.	+	.	Parent=Os12t0556300-01
Chr12	irgsp1_rep	mRNA	22641356	22644098	.	+	.	ID=Os12t0556400-01;Name=Os12t0556400-01;Locus_id=Os12g0556400;Note=Similar to GAG1At protein.;Transcript_evidence=AK108690 (DDBJ%2C Best hit);ORF_evidence=P93048 (UniProt);NIAS_FLcDNA=002-149-D03;TENOR=Os12t0556400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	22641356	22641503	.	+	.	Parent=Os12t0556400-01
Chr12	irgsp1_rep	CDS	22641504	22641654	.	+	0	Parent=Os12t0556400-01
Chr12	irgsp1_rep	CDS	22642709	22642806	.	+	2	Parent=Os12t0556400-01
Chr12	irgsp1_rep	three_prime_UTR	22642807	22642810	.	+	.	Parent=Os12t0556400-01
Chr12	irgsp1_rep	three_prime_UTR	22643201	22644098	.	+	.	Parent=Os12t0556400-01
Chr12	irgsp1_rep	mRNA	22641391	22643084	.	+	.	ID=Os12t0556400-02;Name=Os12t0556400-02;Locus_id=Os12g0556400;Note=Similar to GAG1At protein.;Transcript_evidence=AK062903 (DDBJ%2C Best hit);ORF_evidence=P93048 (UniProt);NIAS_FLcDNA=001-108-F07;TENOR=Os12t0556400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	22641391	22641503	.	+	.	Parent=Os12t0556400-02
Chr12	irgsp1_rep	CDS	22641504	22641654	.	+	0	Parent=Os12t0556400-02
Chr12	irgsp1_rep	CDS	22642709	22642806	.	+	2	Parent=Os12t0556400-02
Chr12	irgsp1_rep	three_prime_UTR	22642807	22643084	.	+	.	Parent=Os12t0556400-02
Chr12	irgsp1_rep	mRNA	22648120	22656258	.	+	.	ID=Os12t0556500-01;Name=Os12t0556500-01;Locus_id=Os12g0556500;Note=Calmodulin binding protein-like family protein.;Transcript_evidence=AK110372 (DDBJ%2C Best hit);ORF_evidence=B8BMG4 (UniProt);InterPro=Calmodulin binding protein-like (IPR012416);NIAS_FLcDNA=002-165-B11;Expression=AK110372;TENOR=Os12t0556500-01;KEGG=Os12t0556500-01
Chr12	irgsp1_rep	five_prime_UTR	22648120	22648208	.	+	.	Parent=Os12t0556500-01
Chr12	irgsp1_rep	CDS	22648209	22648496	.	+	0	Parent=Os12t0556500-01
Chr12	irgsp1_rep	CDS	22648932	22648993	.	+	0	Parent=Os12t0556500-01
Chr12	irgsp1_rep	CDS	22653121	22653193	.	+	1	Parent=Os12t0556500-01
Chr12	irgsp1_rep	CDS	22653297	22653346	.	+	0	Parent=Os12t0556500-01
Chr12	irgsp1_rep	CDS	22653422	22653942	.	+	1	Parent=Os12t0556500-01
Chr12	irgsp1_rep	CDS	22654132	22654292	.	+	2	Parent=Os12t0556500-01
Chr12	irgsp1_rep	CDS	22654373	22654579	.	+	0	Parent=Os12t0556500-01
Chr12	irgsp1_rep	CDS	22654676	22654796	.	+	0	Parent=Os12t0556500-01
Chr12	irgsp1_rep	CDS	22654935	22655009	.	+	2	Parent=Os12t0556500-01
Chr12	irgsp1_rep	CDS	22655102	22655208	.	+	2	Parent=Os12t0556500-01
Chr12	irgsp1_rep	CDS	22655461	22655548	.	+	0	Parent=Os12t0556500-01
Chr12	irgsp1_rep	CDS	22655639	22655764	.	+	2	Parent=Os12t0556500-01
Chr12	irgsp1_rep	CDS	22655907	22656043	.	+	2	Parent=Os12t0556500-01
Chr12	irgsp1_rep	three_prime_UTR	22656044	22656258	.	+	.	Parent=Os12t0556500-01
Chr12	irgsp1_rep	mRNA	22656374	22662598	.	-	.	ID=Os12t0556600-01;Name=Os12t0556600-01;Locus_id=Os12g0556600;Note=CTP synthase family protein.;Transcript_evidence=AK063965 (DDBJ%2C Best hit);ORF_evidence=NP_001146892.1 (RefSeq);GO=Biological Process: pyrimidine nucleotide biosynthetic process (GO:0006221),Molecular Function: CTP synthase activity (GO:0003883);InterPro=CTP synthase (IPR004468),CTP synthase%2C N-terminal (IPR017456),Glutamine amidotransferase type 1 (IPR017926);NIAS_FLcDNA=001-124-A03;Expression=AK063965;TENOR=Os12t0556600-01;KEGG=Os12t0556600-01 (EC:6.3.4.2)
Chr12	irgsp1_rep	CDS	22662464	22662598	.	-	0	Parent=Os12t0556600-01
Chr12	irgsp1_rep	CDS	22662321	22662378	.	-	0	Parent=Os12t0556600-01
Chr12	irgsp1_rep	CDS	22661315	22661394	.	-	2	Parent=Os12t0556600-01
Chr12	irgsp1_rep	CDS	22661148	22661234	.	-	0	Parent=Os12t0556600-01
Chr12	irgsp1_rep	CDS	22661023	22661073	.	-	0	Parent=Os12t0556600-01
Chr12	irgsp1_rep	CDS	22660811	22660928	.	-	0	Parent=Os12t0556600-01
Chr12	irgsp1_rep	CDS	22660681	22660737	.	-	2	Parent=Os12t0556600-01
Chr12	irgsp1_rep	CDS	22660291	22660355	.	-	2	Parent=Os12t0556600-01
Chr12	irgsp1_rep	CDS	22660061	22660144	.	-	0	Parent=Os12t0556600-01
Chr12	irgsp1_rep	CDS	22659770	22659820	.	-	0	Parent=Os12t0556600-01
Chr12	irgsp1_rep	CDS	22659627	22659689	.	-	0	Parent=Os12t0556600-01
Chr12	irgsp1_rep	CDS	22659468	22659514	.	-	0	Parent=Os12t0556600-01
Chr12	irgsp1_rep	CDS	22659081	22659150	.	-	1	Parent=Os12t0556600-01
Chr12	irgsp1_rep	CDS	22658927	22658989	.	-	0	Parent=Os12t0556600-01
Chr12	irgsp1_rep	CDS	22658553	22658642	.	-	0	Parent=Os12t0556600-01
Chr12	irgsp1_rep	CDS	22658243	22658281	.	-	0	Parent=Os12t0556600-01
Chr12	irgsp1_rep	CDS	22658006	22658155	.	-	0	Parent=Os12t0556600-01
Chr12	irgsp1_rep	CDS	22657853	22657930	.	-	0	Parent=Os12t0556600-01
Chr12	irgsp1_rep	CDS	22657683	22657768	.	-	0	Parent=Os12t0556600-01
Chr12	irgsp1_rep	CDS	22657407	22657455	.	-	1	Parent=Os12t0556600-01
Chr12	irgsp1_rep	CDS	22657230	22657310	.	-	0	Parent=Os12t0556600-01
Chr12	irgsp1_rep	CDS	22657052	22657145	.	-	0	Parent=Os12t0556600-01
Chr12	irgsp1_rep	CDS	22656811	22656887	.	-	2	Parent=Os12t0556600-01
Chr12	irgsp1_rep	three_prime_UTR	22656791	22656810	.	-	.	Parent=Os12t0556600-01
Chr12	irgsp1_rep	three_prime_UTR	22656374	22656698	.	-	.	Parent=Os12t0556600-01
Chr12	irgsp1_rep	mRNA	22656393	22662498	.	-	.	ID=Os12t0556600-02;Name=Os12t0556600-02;Locus_id=Os12g0556600;Note=Similar to CTP synthase.;Transcript_evidence=AK102275 (DDBJ%2C Best hit);ORF_evidence=NP_001146892.1 (RefSeq);GO=Biological Process: pyrimidine nucleotide biosynthetic process (GO:0006221),Molecular Function: CTP synthase activity (GO:0003883);InterPro=CTP synthase (IPR004468),CTP synthase%2C N-terminal (IPR017456),Glutamine amidotransferase type 1 (IPR017926);NIAS_FLcDNA=J033089D14;Expression=AK102275;TENOR=Os12t0556600-02;KEGG=Os12t0556600-02 (EC:6.3.4.2)
Chr12	irgsp1_rep	five_prime_UTR	22662487	22662498	.	-	.	Parent=Os12t0556600-02
Chr12	irgsp1_rep	CDS	22662321	22662486	.	-	0	Parent=Os12t0556600-02
Chr12	irgsp1_rep	CDS	22661315	22661394	.	-	2	Parent=Os12t0556600-02
Chr12	irgsp1_rep	CDS	22661148	22661234	.	-	0	Parent=Os12t0556600-02
Chr12	irgsp1_rep	CDS	22661023	22661073	.	-	0	Parent=Os12t0556600-02
Chr12	irgsp1_rep	CDS	22660811	22660928	.	-	0	Parent=Os12t0556600-02
Chr12	irgsp1_rep	CDS	22660681	22660737	.	-	2	Parent=Os12t0556600-02
Chr12	irgsp1_rep	CDS	22660291	22660355	.	-	2	Parent=Os12t0556600-02
Chr12	irgsp1_rep	CDS	22660061	22660144	.	-	0	Parent=Os12t0556600-02
Chr12	irgsp1_rep	CDS	22659770	22659820	.	-	0	Parent=Os12t0556600-02
Chr12	irgsp1_rep	CDS	22659627	22659689	.	-	0	Parent=Os12t0556600-02
Chr12	irgsp1_rep	CDS	22659468	22659514	.	-	0	Parent=Os12t0556600-02
Chr12	irgsp1_rep	CDS	22659081	22659150	.	-	1	Parent=Os12t0556600-02
Chr12	irgsp1_rep	CDS	22658927	22658989	.	-	0	Parent=Os12t0556600-02
Chr12	irgsp1_rep	CDS	22658553	22658642	.	-	0	Parent=Os12t0556600-02
Chr12	irgsp1_rep	CDS	22658243	22658281	.	-	0	Parent=Os12t0556600-02
Chr12	irgsp1_rep	CDS	22658006	22658155	.	-	0	Parent=Os12t0556600-02
Chr12	irgsp1_rep	CDS	22657853	22657930	.	-	0	Parent=Os12t0556600-02
Chr12	irgsp1_rep	CDS	22657683	22657768	.	-	0	Parent=Os12t0556600-02
Chr12	irgsp1_rep	CDS	22657407	22657455	.	-	1	Parent=Os12t0556600-02
Chr12	irgsp1_rep	CDS	22657230	22657310	.	-	0	Parent=Os12t0556600-02
Chr12	irgsp1_rep	CDS	22657052	22657145	.	-	0	Parent=Os12t0556600-02
Chr12	irgsp1_rep	CDS	22656811	22656887	.	-	2	Parent=Os12t0556600-02
Chr12	irgsp1_rep	three_prime_UTR	22656791	22656810	.	-	.	Parent=Os12t0556600-02
Chr12	irgsp1_rep	three_prime_UTR	22656393	22656698	.	-	.	Parent=Os12t0556600-02
Chr12	irgsp1_rep	mRNA	22657051	22662484	.	+	.	ID=Os12t0556701-00;Name=Os12t0556701-00;Locus_id=Os12g0556701;Note=Non-protein coding transcript.;Transcript_evidence=tplb0056h06 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os12t0556701-00
Chr12	irgsp1_rep	exon	22657051	22657127	.	+	.	Parent=Os12t0556701-00
Chr12	irgsp1_rep	exon	22657215	22657312	.	+	.	Parent=Os12t0556701-00
Chr12	irgsp1_rep	exon	22657636	22657825	.	+	.	Parent=Os12t0556701-00
Chr12	irgsp1_rep	exon	22657993	22658201	.	+	.	Parent=Os12t0556701-00
Chr12	irgsp1_rep	exon	22658855	22659047	.	+	.	Parent=Os12t0556701-00
Chr12	irgsp1_rep	exon	22659655	22659816	.	+	.	Parent=Os12t0556701-00
Chr12	irgsp1_rep	exon	22660594	22660960	.	+	.	Parent=Os12t0556701-00
Chr12	irgsp1_rep	exon	22661124	22661228	.	+	.	Parent=Os12t0556701-00
Chr12	irgsp1_rep	exon	22661309	22661380	.	+	.	Parent=Os12t0556701-00
Chr12	irgsp1_rep	exon	22662309	22662484	.	+	.	Parent=Os12t0556701-00
Chr12	irgsp1_rep	mRNA	22670886	22672176	.	+	.	ID=Os12t0556900-00;Name=Os12t0556900-00;Locus_id=Os12g0556900;Note=Protein of unknown function DUF1645 family protein.;Transcript_evidence=EU973667 (DDBJ);ORF_evidence=NP_001177007.1 (RefSeq);InterPro=Protein of unknown function DUF1645 (IPR012442);TENOR=Os12t0556900-00;KEGG=Os12t0556900-00
Chr12	irgsp1_rep	CDS	22670886	22671923	.	+	0	Parent=Os12t0556900-00
Chr12	irgsp1_rep	three_prime_UTR	22671924	22672176	.	+	.	Parent=Os12t0556900-00
Chr12	irgsp1_rep	mRNA	22710855	22713349	.	-	.	ID=Os12t0557400-01;Name=Os12t0557400-01;Locus_id=Os12g0557400;Note=Conserved hypothetical protein.;Transcript_evidence=AK060041 (DDBJ%2C Best hit);ORF_evidence=B9GDQ4 (UniProt);NIAS_FLcDNA=006-304-C08;TENOR=Os12t0557400-01
Chr12	irgsp1_rep	five_prime_UTR	22713215	22713349	.	-	.	Parent=Os12t0557400-01
Chr12	irgsp1_rep	CDS	22713006	22713214	.	-	0	Parent=Os12t0557400-01
Chr12	irgsp1_rep	CDS	22712635	22712854	.	-	1	Parent=Os12t0557400-01
Chr12	irgsp1_rep	CDS	22711059	22711274	.	-	0	Parent=Os12t0557400-01
Chr12	irgsp1_rep	three_prime_UTR	22710855	22711058	.	-	.	Parent=Os12t0557400-01
Chr12	irgsp1_rep	mRNA	22710855	22713327	.	-	.	ID=Os12t0557400-02;Name=Os12t0557400-02;Locus_id=Os12g0557400;Note=Conserved hypothetical protein.;Transcript_evidence=AK104114 (DDBJ%2C Best hit),AK101325 (DDBJ%2C Best hit);ORF_evidence=B8BMG8 (UniProt);NIAS_FLcDNA=006-202-H10,J033034F22;TENOR=Os12t0557400-02
Chr12	irgsp1_rep	five_prime_UTR	22713215	22713327	.	-	.	Parent=Os12t0557400-02
Chr12	irgsp1_rep	CDS	22713006	22713214	.	-	0	Parent=Os12t0557400-02
Chr12	irgsp1_rep	CDS	22712635	22712854	.	-	1	Parent=Os12t0557400-02
Chr12	irgsp1_rep	CDS	22711059	22711274	.	-	0	Parent=Os12t0557400-02
Chr12	irgsp1_rep	three_prime_UTR	22710855	22711058	.	-	.	Parent=Os12t0557400-02
Chr12	irgsp1_rep	mRNA	22711046	22713258	.	+	.	ID=Os12t0557501-00;Name=Os12t0557501-00;Locus_id=Os12g0557501;Note=Hypothetical gene.;Transcript_evidence=BT018978 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0557501-00
Chr12	irgsp1_rep	five_prime_UTR	22711046	22711274	.	+	.	Parent=Os12t0557501-00
Chr12	irgsp1_rep	five_prime_UTR	22712635	22712838	.	+	.	Parent=Os12t0557501-00
Chr12	irgsp1_rep	five_prime_UTR	22712994	22713011	.	+	.	Parent=Os12t0557501-00
Chr12	irgsp1_rep	CDS	22713012	22713258	.	+	0	Parent=Os12t0557501-00
Chr12	irgsp1_rep	mRNA	22723146	22726841	.	-	.	ID=Os12t0557800-01;Name=Os12t0557800-01;Locus_id=Os12g0557800;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK121691 (DDBJ%2C Best hit);ORF_evidence=Q2QNQ2 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033071H11;Expression=AK121691;TENOR=Os12t0557800-01;KEGG=Os12t0557800-01
Chr12	irgsp1_rep	five_prime_UTR	22726767	22726841	.	-	.	Parent=Os12t0557800-01
Chr12	irgsp1_rep	CDS	22726193	22726766	.	-	0	Parent=Os12t0557800-01
Chr12	irgsp1_rep	CDS	22724676	22726150	.	-	2	Parent=Os12t0557800-01
Chr12	irgsp1_rep	three_prime_UTR	22724587	22724675	.	-	.	Parent=Os12t0557800-01
Chr12	irgsp1_rep	three_prime_UTR	22723146	22724446	.	-	.	Parent=Os12t0557800-01
Chr12	irgsp1_rep	mRNA	22731572	22732467	.	+	.	ID=Os12t0557900-00;Name=Os12t0557900-00;Locus_id=Os12g0557900;Oryzabase Gene Symbol Synonym(s)=OsFbox667%2C Os_F0594;Oryzabase Gene Name Synonym(s)=F-box protein 667;Note=Similar to F-box domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QNP9 (UniProt);InterPro=FBD (IPR013596);Oryzabase=17427;TENOR=Os12t0557900-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	22731572	22731742	.	+	0	Parent=Os12t0557900-00
Chr12	irgsp1_rep	CDS	22731829	22731960	.	+	0	Parent=Os12t0557900-00
Chr12	irgsp1_rep	CDS	22732090	22732467	.	+	0	Parent=Os12t0557900-00
Chr12	irgsp1_rep	mRNA	22736219	22736862	.	+	.	ID=Os12t0558133-00;Name=Os12t0558133-00;Locus_id=Os12g0558133;Note=Similar to SPA4 (SPA1-RELATED 4)%3B protein binding / signal transducer.;Transcript_evidence=AK358104 (DDBJ);ORF_evidence=NP_175717.1 (RefSeq);TENOR=Os12t0558133-00
Chr12	irgsp1_rep	five_prime_UTR	22736219	22736576	.	+	.	Parent=Os12t0558133-00
Chr12	irgsp1_rep	CDS	22736577	22736606	.	+	0	Parent=Os12t0558133-00
Chr12	irgsp1_rep	CDS	22736701	22736847	.	+	0	Parent=Os12t0558133-00
Chr12	irgsp1_rep	three_prime_UTR	22736848	22736862	.	+	.	Parent=Os12t0558133-00
Chr12	irgsp1_rep	mRNA	22773516	22774906	.	+	.	ID=Os12t0558366-00;Name=Os12t0558366-00;Locus_id=Os12g0558366;Oryzabase Gene Symbol Synonym(s)=Os_F0763;Note=Similar to F-box domain containing protein.;Transcript_evidence=EU945447 (DDBJ);ORF_evidence=Q2QNP9 (UniProt);InterPro=FBD (IPR013596);Oryzabase=17566;TENOR=Os12t0558366-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	22773516	22774199	.	+	0	Parent=Os12t0558366-00
Chr12	irgsp1_rep	CDS	22774336	22774713	.	+	0	Parent=Os12t0558366-00
Chr12	irgsp1_rep	three_prime_UTR	22774714	22774906	.	+	.	Parent=Os12t0558366-00
Chr12	irgsp1_rep	mRNA	22783377	22785768	.	-	.	ID=Os12t0558400-01;Name=Os12t0558400-01;Locus_id=Os12g0558400;Note=Similar to F-box domain containing protein.;Transcript_evidence=AK073071 (DDBJ%2C Best hit);ORF_evidence=Q2QNP9 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033010F10;Oryzabase=17615;TENOR=Os12t0558400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	22785607	22785768	.	-	.	Parent=Os12t0558400-01
Chr12	irgsp1_rep	five_prime_UTR	22785269	22785452	.	-	.	Parent=Os12t0558400-01
Chr12	irgsp1_rep	CDS	22784600	22785268	.	-	0	Parent=Os12t0558400-01
Chr12	irgsp1_rep	three_prime_UTR	22784385	22784599	.	-	.	Parent=Os12t0558400-01
Chr12	irgsp1_rep	three_prime_UTR	22784155	22784286	.	-	.	Parent=Os12t0558400-01
Chr12	irgsp1_rep	three_prime_UTR	22783377	22784016	.	-	.	Parent=Os12t0558400-01
Chr12	irgsp1_rep	mRNA	22825636	22827555	.	-	.	ID=Os12t0559000-00;Name=Os12t0559000-00;Locus_id=Os12g0559000;Note=Hypothetical conserved gene.;Transcript_evidence=CT830001 (DDBJ%2C Secondary hit);ORF_evidence=Q2QNP1 (UniProt);TENOR=Os12t0559000-00;KEGG=Os12t0559000-00
Chr12	irgsp1_rep	five_prime_UTR	22827555	22827555	.	-	.	Parent=Os12t0559000-00
Chr12	irgsp1_rep	CDS	22827451	22827554	.	-	0	Parent=Os12t0559000-00
Chr12	irgsp1_rep	CDS	22827331	22827439	.	-	1	Parent=Os12t0559000-00
Chr12	irgsp1_rep	three_prime_UTR	22826755	22827330	.	-	.	Parent=Os12t0559000-00
Chr12	irgsp1_rep	three_prime_UTR	22826563	22826643	.	-	.	Parent=Os12t0559000-00
Chr12	irgsp1_rep	three_prime_UTR	22826443	22826465	.	-	.	Parent=Os12t0559000-00
Chr12	irgsp1_rep	three_prime_UTR	22825636	22825819	.	-	.	Parent=Os12t0559000-00
Chr12	irgsp1_rep	mRNA	22848617	22850629	.	+	.	ID=Os12t0559100-01;Name=Os12t0559100-01;Locus_id=Os12g0559100;Note=Conserved hypothetical protein.;Transcript_evidence=AK100980 (DDBJ%2C Best hit);ORF_evidence=B8ANN1 (UniProt);NIAS_FLcDNA=J023144J04;TENOR=Os12t0559100-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	22848617	22848675	.	+	.	Parent=Os12t0559100-01
Chr12	irgsp1_rep	CDS	22848676	22848996	.	+	0	Parent=Os12t0559100-01
Chr12	irgsp1_rep	three_prime_UTR	22848997	22850629	.	+	.	Parent=Os12t0559100-01
Chr12	irgsp1_rep	mRNA	22854749	22860198	.	-	.	ID=Os12t0559200-01;Name=Os12t0559200-01;Locus_id=Os12g0559200;CGSNL Gene Symbol=LOX11;CGSNL Gene Name=LIPOXYGENASE 11;Oryzabase Gene Symbol Synonym(s)=OsLOX11%2C OsRCI-1%2C RCI-1%2C OsBphi262%2C OsLOX12%2C OsLOX2.2%2C LOX2.2;Oryzabase Gene Name Synonym(s)=lipoxygenase 11%2C lipoxygenase 12%2C rice chemically induced cDNA 1%2C BPH-inducible gene 252%2C Brown planthopper-inducible gene 252%2C Lipoxygenase 2.1;Note=Lipoxygenase (EC 1.13.11.12).;Transcript_evidence=AK072241 (DDBJ%2C Best hit);ORF_evidence=Q9FSE5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: protein binding (GO:0005515),Molecular Function: lipoxygenase activity (GO:0016165),Molecular Function: oxidoreductase activity%2C acting on single donors with incorporation of molecular oxygen%2C incorporation of two atoms of oxygen (GO:0016702),Molecular Function: metal ion binding (GO:0046872);InterPro=Lipoxygenase (IPR000907),Lipoxygenase%2C LH2 (IPR001024),Lipoxygenase%2C plant (IPR001246),Lipase/lipooxygenase%2C PLAT/LH2 (IPR008976),Lipoxygenase%2C C-terminal (IPR013819),Lipoxygenase%2C iron binding site (IPR020833),Lipoxygenase%2C conserved site (IPR020834);NIAS_FLcDNA=J023002P20;Oryzabase=10394;Expression=AK072241;TENOR=Os12t0559200-01;KEGG=Os12t0559200-01 (EC:1.13.11.12)
Chr12	irgsp1_rep	five_prime_UTR	22860135	22860198	.	-	.	Parent=Os12t0559200-01
Chr12	irgsp1_rep	CDS	22859792	22860134	.	-	0	Parent=Os12t0559200-01
Chr12	irgsp1_rep	CDS	22858844	22859112	.	-	2	Parent=Os12t0559200-01
Chr12	irgsp1_rep	CDS	22857314	22857926	.	-	0	Parent=Os12t0559200-01
Chr12	irgsp1_rep	CDS	22857000	22857092	.	-	2	Parent=Os12t0559200-01
Chr12	irgsp1_rep	CDS	22856760	22856869	.	-	2	Parent=Os12t0559200-01
Chr12	irgsp1_rep	CDS	22856359	22856660	.	-	0	Parent=Os12t0559200-01
Chr12	irgsp1_rep	CDS	22855861	22856127	.	-	1	Parent=Os12t0559200-01
Chr12	irgsp1_rep	CDS	22854994	22855765	.	-	1	Parent=Os12t0559200-01
Chr12	irgsp1_rep	three_prime_UTR	22854749	22854993	.	-	.	Parent=Os12t0559200-01
Chr12	irgsp1_rep	mRNA	22854591	22858110	.	-	.	ID=Os12t0559200-02;Name=Os12t0559200-02;Locus_id=Os12g0559200;CGSNL Gene Symbol=LOX11;CGSNL Gene Name=LIPOXYGENASE 11;Oryzabase Gene Symbol Synonym(s)=OsLOX11%2C OsRCI-1%2C RCI-1%2C OsBphi262%2C OsLOX12%2C OsLOX2.2%2C LOX2.2;Oryzabase Gene Name Synonym(s)=lipoxygenase 11%2C lipoxygenase 12%2C rice chemically induced cDNA 1%2C BPH-inducible gene 252%2C Brown planthopper-inducible gene 252%2C Lipoxygenase 2.1;Note=Similar to Lipoxygenase.;Transcript_evidence=AK066737 (DDBJ%2C Best hit);ORF_evidence=Q9FSE5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: lipoxygenase activity (GO:0016165),Molecular Function: oxidoreductase activity%2C acting on single donors with incorporation of molecular oxygen%2C incorporation of two atoms of oxygen (GO:0016702),Molecular Function: metal ion binding (GO:0046872);InterPro=Lipoxygenase (IPR000907),Lipoxygenase%2C plant (IPR001246),Lipoxygenase%2C C-terminal (IPR013819),Lipoxygenase%2C iron binding site (IPR020833),Lipoxygenase%2C conserved site (IPR020834);NIAS_FLcDNA=J013079G10;Oryzabase=10394;Expression=AK066737;TENOR=Os12t0559200-02;KEGG=Os12t0559200-02 (EC:1.13.11.12)
Chr12	irgsp1_rep	five_prime_UTR	22858026	22858110	.	-	.	Parent=Os12t0559200-02
Chr12	irgsp1_rep	CDS	22857314	22858025	.	-	0	Parent=Os12t0559200-02
Chr12	irgsp1_rep	CDS	22857000	22857092	.	-	2	Parent=Os12t0559200-02
Chr12	irgsp1_rep	CDS	22856760	22856869	.	-	2	Parent=Os12t0559200-02
Chr12	irgsp1_rep	CDS	22856359	22856660	.	-	0	Parent=Os12t0559200-02
Chr12	irgsp1_rep	CDS	22855861	22856127	.	-	1	Parent=Os12t0559200-02
Chr12	irgsp1_rep	CDS	22854994	22855765	.	-	1	Parent=Os12t0559200-02
Chr12	irgsp1_rep	three_prime_UTR	22854591	22854993	.	-	.	Parent=Os12t0559200-02
Chr12	irgsp1_rep	mRNA	22855138	22855341	.	+	.	ID=Os12t0559250-00;Name=Os12t0559250-00;Locus_id=Os12g0559250;Note=Non-protein coding transcript.;Transcript_evidence=EU513009 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os12t0559250-00
Chr12	irgsp1_rep	exon	22855138	22855341	.	+	.	Parent=Os12t0559250-00
Chr12	irgsp1_rep	mRNA	22867479	22868871	.	-	.	ID=Os12t0559300-00;Name=Os12t0559300-00;Locus_id=Os12g0559300;Oryzabase Gene Name Synonym(s)=Pib homologue;Note=Similar to Leucine Rich Repeat family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QNN4 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Leucine-rich repeat (IPR001611);Oryzabase=20238;TENOR=Os12t0559300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	22868453	22868871	.	-	0	Parent=Os12t0559300-00
Chr12	irgsp1_rep	CDS	22867479	22868436	.	-	1	Parent=Os12t0559300-00
Chr12	irgsp1_rep	mRNA	22873853	22886341	.	-	.	ID=Os12t0559400-01;Name=Os12t0559400-01;Locus_id=Os12g0559400;RAP-DB Gene Symbol Synonym(s)=BPH26%2C BPH18;RAP-DB Gene Name Synonym(s)=BROWN PLANTHOPPER RESISTANCE 26;CGSNL Gene Symbol=BPH26;CGSNL Gene Name=BROWN PLANTHOPPER RESISTANCE 26;Oryzabase Gene Symbol Synonym(s)=Bph26(t);Note=Coiled-coil-nucleotide-binding-site-leucine-rich repeat (CC-NBS-LRR) protein%2C (LRR domain is lost in Nipponbare)%2C Resistance to brown planthopper%2C (Nipponbare: BPH-susceptible);Transcript_evidence=Inferred from literature;ORF_evidence=A0A076FJL2;GO=Molecular Function: ADP binding (GO:0043531);InterPro=P-loop containing nucleoside triphosphate hydrolase (IPR027417),Virus X resistance protein-like%2C coiled-coil domain (IPR038005),NB-ARC (IPR002182);Manual Curation=June 26%2C 2018;Literature_PMID=25076167;Oryzabase=8856;TENOR=Os12t0559400-00
Chr12	irgsp1_rep	CDS	22885298	22886341	.	-	0	Parent=Os12t0559400-01
Chr12	irgsp1_rep	CDS	22882208	22882831	.	-	0	Parent=Os12t0559400-01
Chr12	irgsp1_rep	CDS	22875416	22875790	.	-	0	Parent=Os12t0559400-01
Chr12	irgsp1_rep	three_prime_UTR	22873853	22875415	.	-	.	Parent=Os12t0559400-01
Chr12	irgsp1_rep	mRNA	22934817	22935735	.	+	.	ID=Os12t0559934-00;Name=Os12t0559934-00;Locus_id=Os12g0559934;Note=Similar to Lipoxygenase.;Transcript_evidence=ab initio prediction;ORF_evidence=Q9FSE5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on single donors with incorporation of molecular oxygen%2C incorporation of two atoms of oxygen (GO:0016702),Molecular Function: metal ion binding (GO:0046872);InterPro=Lipoxygenase (IPR000907),Lipoxygenase%2C C-terminal (IPR013819),Lipoxygenase%2C iron binding site (IPR020833),Lipoxygenase%2C conserved site (IPR020834);TENOR=Os12t0559934-00
Chr12	irgsp1_rep	CDS	22934817	22934831	.	+	0	Parent=Os12t0559934-00
Chr12	irgsp1_rep	CDS	22934931	22935232	.	+	0	Parent=Os12t0559934-00
Chr12	irgsp1_rep	CDS	22935465	22935735	.	+	1	Parent=Os12t0559934-00
Chr12	irgsp1_rep	mRNA	22936077	22936818	.	-	.	ID=Os12t0560067-00;Name=Os12t0560067-00;Locus_id=Os12g0560067;Note=Non-protein coding transcript.;Transcript_evidence=EU945269 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0560067-00
Chr12	irgsp1_rep	exon	22936077	22936818	.	-	.	Parent=Os12t0560067-00
Chr12	irgsp1_rep	mRNA	22936472	22936772	.	+	.	ID=Os12t0560200-00;Name=Os12t0560200-00;Locus_id=Os12g0560200;CGSNL Gene Symbol=LOX12;CGSNL Gene Name=LIPOXYGENASE 12;Oryzabase Gene Symbol Synonym(s)=OsLOX12;Oryzabase Gene Name Synonym(s)=lipoxygenase 12;Note=Similar to Lipoxygenase.;Transcript_evidence=FJ667775 (DDBJ%2C Best hit);ORF_evidence=A2ZLM2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on single donors with incorporation of molecular oxygen%2C incorporation of two atoms of oxygen (GO:0016702),Molecular Function: metal ion binding (GO:0046872);InterPro=Lipoxygenase (IPR000907),Lipoxygenase%2C C-terminal (IPR013819);Oryzabase=10395;TENOR=Os12t0560200-00
Chr12	irgsp1_rep	five_prime_UTR	22936472	22936473	.	+	.	Parent=Os12t0560200-00
Chr12	irgsp1_rep	CDS	22936474	22936772	.	+	0	Parent=Os12t0560200-00
Chr12	irgsp1_rep	mRNA	22939792	22943689	.	-	.	ID=Os12t0560300-01;Name=Os12t0560300-01;Locus_id=Os12g0560300;CGSNL Gene Symbol=SAR1B;CGSNL Gene Name=SECRETION-ASSOCIATED%2C RAS-RELATED PROTEIN 1B;Oryzabase Gene Symbol Synonym(s)=OsARL1f%2C ARL1f%2C OsSar1b%2C Sar1b;Oryzabase Gene Name Synonym(s)=ARF-like protein 1f%2C "secretion-associated%2C Ras-related protein1b";Note=Similar to NTGB2 (Fragment).;Transcript_evidence=AK060332 (DDBJ%2C Best hit),AK099125 (DDBJ%2C Best hit),AK099149 (DDBJ%2C Best hit);ORF_evidence=B2ZGG5 (UniProt);GO=Biological Process: intracellular protein transport (GO:0006886),Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C SAR1-type (IPR006687),Small GTPase superfamily%2C ARF/SAR type (IPR006689);NIAS_FLcDNA=001-008-B07,J023044P12,J023063C05;Oryzabase=21020;TENOR=Os12t0560300-01
Chr12	irgsp1_rep	five_prime_UTR	22943561	22943689	.	-	.	Parent=Os12t0560300-01
Chr12	irgsp1_rep	CDS	22943432	22943560	.	-	0	Parent=Os12t0560300-01
Chr12	irgsp1_rep	CDS	22941984	22942115	.	-	0	Parent=Os12t0560300-01
Chr12	irgsp1_rep	CDS	22940033	22940353	.	-	0	Parent=Os12t0560300-01
Chr12	irgsp1_rep	three_prime_UTR	22939792	22940032	.	-	.	Parent=Os12t0560300-01
Chr12	irgsp1_rep	mRNA	22947030	22948075	.	+	.	ID=Os12t0560400-01;Name=Os12t0560400-01;Locus_id=Os12g0560400;Note=Similar to DNA-directed RNA polymerase II 14.5 kDa polypeptide (EC 2.7.7.6) (RPB9) (RPB14.5).;Transcript_evidence=AK062352 (DDBJ%2C Best hit);ORF_evidence=Q2QNM4 (UniProt);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA-directed RNA polymerase activity (GO:0003899),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C TFIIS-type (IPR001222),DNA-directed RNA polymerase%2C subunit C11/M/9 (IPR012164);NIAS_FLcDNA=001-101-G06;Expression=AK062352;TENOR=Os12t0560400-01;KEGG=Os12t0560400-01 (EC:2.7.7.6)
Chr12	irgsp1_rep	five_prime_UTR	22947030	22947031	.	+	.	Parent=Os12t0560400-01
Chr12	irgsp1_rep	CDS	22947032	22947106	.	+	0	Parent=Os12t0560400-01
Chr12	irgsp1_rep	CDS	22947471	22947629	.	+	0	Parent=Os12t0560400-01
Chr12	irgsp1_rep	CDS	22947728	22947808	.	+	0	Parent=Os12t0560400-01
Chr12	irgsp1_rep	three_prime_UTR	22947809	22948075	.	+	.	Parent=Os12t0560400-01
Chr12	irgsp1_rep	mRNA	22948763	22951075	.	-	.	ID=Os12t0560500-01;Name=Os12t0560500-01;Locus_id=Os12g0560500;Note=Pseudouridine synthase domain containing protein.;Transcript_evidence=AK061524 (DDBJ%2C Best hit);ORF_evidence=NP_176031.2 (RefSeq);GO=Biological Process: pseudouridine synthesis (GO:0001522),Biological Process: RNA modification (GO:0009451),Molecular Function: RNA binding (GO:0003723),Molecular Function: pseudouridine synthase activity (GO:0009982);InterPro=Pseudouridine synthase%2C RsuA and RluB/C/D/E/F (IPR006145),Pseudouridine synthase%2C RluC/RluD%2C conserved site (IPR006224),Pseudouridine synthase%2C catalytic domain (IPR020103);NIAS_FLcDNA=006-310-C10;TENOR=Os12t0560500-01
Chr12	irgsp1_rep	five_prime_UTR	22951065	22951075	.	-	.	Parent=Os12t0560500-01
Chr12	irgsp1_rep	CDS	22950710	22951064	.	-	0	Parent=Os12t0560500-01
Chr12	irgsp1_rep	CDS	22948964	22949646	.	-	2	Parent=Os12t0560500-01
Chr12	irgsp1_rep	three_prime_UTR	22948763	22948963	.	-	.	Parent=Os12t0560500-01
Chr12	irgsp1_rep	mRNA	22948747	22951053	.	-	.	ID=Os12t0560500-02;Name=Os12t0560500-02;Locus_id=Os12g0560500;Note=Similar to pseudouridine synthase family protein.;Transcript_evidence=AK102334 (DDBJ%2C Best hit);ORF_evidence=NP_176031.2 (RefSeq);GO=Biological Process: pseudouridine synthesis (GO:0001522),Biological Process: RNA modification (GO:0009451),Molecular Function: RNA binding (GO:0003723),Molecular Function: pseudouridine synthase activity (GO:0009982);InterPro=Pseudouridine synthase%2C RsuA and RluB/C/D/E/F (IPR006145),Pseudouridine synthase%2C RluC/RluD%2C conserved site (IPR006224),Pseudouridine synthase%2C catalytic domain (IPR020103);NIAS_FLcDNA=J033091A05;TENOR=Os12t0560500-02
Chr12	irgsp1_rep	five_prime_UTR	22950936	22951053	.	-	.	Parent=Os12t0560500-02
Chr12	irgsp1_rep	CDS	22950710	22950935	.	-	0	Parent=Os12t0560500-02
Chr12	irgsp1_rep	CDS	22948964	22949646	.	-	2	Parent=Os12t0560500-02
Chr12	irgsp1_rep	three_prime_UTR	22948747	22948963	.	-	.	Parent=Os12t0560500-02
Chr12	irgsp1_rep	mRNA	22951705	22953819	.	+	.	ID=Os12t0560600-01;Name=Os12t0560600-01;Locus_id=Os12g0560600;Note=Conserved hypothetical protein.;Transcript_evidence=AK059081 (DDBJ%2C Best hit);ORF_evidence=B8BMI0 (UniProt);NIAS_FLcDNA=001-022-A11;Expression=AK059081;TENOR=Os12t0560600-01;KEGG=Os12t0560600-01
Chr12	irgsp1_rep	five_prime_UTR	22951705	22951868	.	+	.	Parent=Os12t0560600-01
Chr12	irgsp1_rep	CDS	22951869	22951979	.	+	0	Parent=Os12t0560600-01
Chr12	irgsp1_rep	CDS	22952665	22952780	.	+	0	Parent=Os12t0560600-01
Chr12	irgsp1_rep	CDS	22953326	22953674	.	+	1	Parent=Os12t0560600-01
Chr12	irgsp1_rep	three_prime_UTR	22953675	22953819	.	+	.	Parent=Os12t0560600-01
Chr12	irgsp1_rep	mRNA	22954078	22959404	.	-	.	ID=Os12t0560700-01;Name=Os12t0560700-01;Locus_id=Os12g0560700;CGSNL Gene Symbol=MCM7;CGSNL Gene Name=MINI-CHROMOSOME MAINTENANCE PROTEIN 7;Oryzabase Gene Symbol Synonym(s)=OsMCM7;Note=Similar to PROLIFERA protein.;Transcript_evidence=AK073411 (DDBJ%2C Best hit);ORF_evidence=NP_001105524.1 (RefSeq);GO=Biological Process: DNA replication (GO:0006260),Biological Process: DNA-dependent DNA replication initiation (GO:0006270),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: ATP binding (GO:0005524);InterPro=Mini-Chromosome maintenance%2C DNA-dependent ATPase (IPR001208),Mini-Chromosome maintenance complex protein 7 (IPR008050),Nucleic acid-binding%2C OB-fold (IPR012340),Nucleic acid-binding%2C OB-fold-like (IPR016027),Mini-Chromosome maintenance%2C conserved site (IPR018525);NIAS_FLcDNA=J033041P20;Oryzabase=9197;Expression=AK073411;TENOR=Os12t0560700-01;KEGG=Os12t0560700-01
Chr12	irgsp1_rep	five_prime_UTR	22959312	22959404	.	-	.	Parent=Os12t0560700-01
Chr12	irgsp1_rep	CDS	22959266	22959311	.	-	0	Parent=Os12t0560700-01
Chr12	irgsp1_rep	CDS	22959089	22959156	.	-	2	Parent=Os12t0560700-01
Chr12	irgsp1_rep	CDS	22958915	22958974	.	-	0	Parent=Os12t0560700-01
Chr12	irgsp1_rep	CDS	22958571	22958800	.	-	0	Parent=Os12t0560700-01
Chr12	irgsp1_rep	CDS	22957749	22957926	.	-	1	Parent=Os12t0560700-01
Chr12	irgsp1_rep	CDS	22957227	22957349	.	-	0	Parent=Os12t0560700-01
Chr12	irgsp1_rep	CDS	22957024	22957113	.	-	0	Parent=Os12t0560700-01
Chr12	irgsp1_rep	CDS	22956660	22956802	.	-	0	Parent=Os12t0560700-01
Chr12	irgsp1_rep	CDS	22956392	22956569	.	-	1	Parent=Os12t0560700-01
Chr12	irgsp1_rep	CDS	22956095	22956286	.	-	0	Parent=Os12t0560700-01
Chr12	irgsp1_rep	CDS	22955639	22955811	.	-	0	Parent=Os12t0560700-01
Chr12	irgsp1_rep	CDS	22955335	22955539	.	-	1	Parent=Os12t0560700-01
Chr12	irgsp1_rep	CDS	22955003	22955167	.	-	0	Parent=Os12t0560700-01
Chr12	irgsp1_rep	CDS	22954695	22954916	.	-	0	Parent=Os12t0560700-01
Chr12	irgsp1_rep	CDS	22954477	22954581	.	-	0	Parent=Os12t0560700-01
Chr12	irgsp1_rep	three_prime_UTR	22954078	22954476	.	-	.	Parent=Os12t0560700-01
Chr12	irgsp1_rep	mRNA	22967366	22968659	.	+	.	ID=Os12t0560900-01;Name=Os12t0560900-01;Locus_id=Os12g0560900;CGSNL Gene Symbol=OBF1;CGSNL Gene Name=OCS-ELEMENT BINDING FACTOR 1;Oryzabase Gene Symbol Synonym(s)=OsOBF1%2C OsbZIP87;Oryzabase Gene Name Synonym(s)=Oryza sativa OBF1%2C ocs-element Binding Factor 1%2C bZIP transcription factor 87;Note=Non-protein coding transcript.;Transcript_evidence=AK071530 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J023102N09;Oryzabase=9986;TENOR=Os12t0560900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	exon	22967366	22968022	.	+	.	Parent=Os12t0560900-01
Chr12	irgsp1_rep	exon	22968375	22968659	.	+	.	Parent=Os12t0560900-01
Chr12	irgsp1_rep	mRNA	22969436	22972239	.	-	.	ID=Os12t0561000-01;Name=Os12t0561000-01;Locus_id=Os12g0561000;Oryzabase Gene Symbol Synonym(s)=COX5c;Oryzabase Gene Name Synonym(s)=cytoChrome c oxidase subunit 5c;Note=CytoChrome c oxidase polypeptide Vc (EC 1.9.3.1) (CytoChrome c oxidase subunit 5c).;Transcript_evidence=AK072527 (DDBJ%2C Best hit);ORF_evidence=Q9SXX7 (UniProt);GO=Cellular Component: mitochondrial respiratory chain (GO:0005746);InterPro=CytoChrome c oxidase subunit Vc (IPR008432);NIAS_FLcDNA=J023130G10;Oryzabase=13842;Expression=AK072527;TENOR=Os12t0561000-01;KEGG=Os12t0561000-01 (EC:1.9.3.1)
Chr12	irgsp1_rep	five_prime_UTR	22969831	22972239	.	-	.	Parent=Os12t0561000-01
Chr12	irgsp1_rep	CDS	22969639	22969830	.	-	0	Parent=Os12t0561000-01
Chr12	irgsp1_rep	three_prime_UTR	22969436	22969638	.	-	.	Parent=Os12t0561000-01
Chr12	irgsp1_rep	mRNA	22973869	22976141	.	-	.	ID=Os12t0561200-01;Name=Os12t0561200-01;Locus_id=Os12g0561200;Note=Similar to PAPA-1-like conserved region family protein%2C expressed.;Transcript_evidence=AK110847 (DDBJ%2C Best hit);ORF_evidence=Q2QNL8 (UniProt);InterPro=PAPA-1-like conserved region (IPR006880);NIAS_FLcDNA=002-172-C01;Expression=AK110847;TENOR=Os12t0561200-01;KEGG=Os12t0561200-01
Chr12	irgsp1_rep	five_prime_UTR	22975993	22976141	.	-	.	Parent=Os12t0561200-01
Chr12	irgsp1_rep	five_prime_UTR	22975721	22975723	.	-	.	Parent=Os12t0561200-01
Chr12	irgsp1_rep	CDS	22975100	22975720	.	-	0	Parent=Os12t0561200-01
Chr12	irgsp1_rep	CDS	22974213	22974813	.	-	0	Parent=Os12t0561200-01
Chr12	irgsp1_rep	CDS	22974000	22974100	.	-	2	Parent=Os12t0561200-01
Chr12	irgsp1_rep	CDS	22973869	22973913	.	-	0	Parent=Os12t0561200-01
Chr12	irgsp1_rep	mRNA	22972925	22975177	.	-	.	ID=Os12t0561200-02;Name=Os12t0561200-02;Locus_id=Os12g0561200;Note=Zinc finger%2C HIT-type domain containing protein.;Transcript_evidence=AK063760 (DDBJ%2C Best hit);ORF_evidence=Q2QNL8 (UniProt);InterPro=PAPA-1-like conserved region (IPR006880),Zinc finger%2C HIT-type (IPR007529);NIAS_FLcDNA=001-121-A11;Expression=AK063760;TENOR=Os12t0561200-02;KEGG=Os12t0561200-02
Chr12	irgsp1_rep	CDS	22975100	22975177	.	-	0	Parent=Os12t0561200-02
Chr12	irgsp1_rep	CDS	22974213	22974813	.	-	0	Parent=Os12t0561200-02
Chr12	irgsp1_rep	CDS	22974000	22974100	.	-	2	Parent=Os12t0561200-02
Chr12	irgsp1_rep	CDS	22973833	22973913	.	-	0	Parent=Os12t0561200-02
Chr12	irgsp1_rep	CDS	22973564	22973691	.	-	0	Parent=Os12t0561200-02
Chr12	irgsp1_rep	CDS	22973340	22973466	.	-	1	Parent=Os12t0561200-02
Chr12	irgsp1_rep	three_prime_UTR	22972925	22973339	.	-	.	Parent=Os12t0561200-02
Chr12	irgsp1_rep	mRNA	23000258	23000963	.	-	.	ID=Os12t0561500-00;Name=Os12t0561500-00;Locus_id=Os12g0561500;Note=Pectinesterase inhibitor domain containing protein.;Transcript_evidence=EU971397 (DDBJ);ORF_evidence=Q2QNL2 (UniProt);GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);TENOR=Os12t0561500-00;KEGG=Os12t0561500-00
Chr12	irgsp1_rep	five_prime_UTR	23000954	23000963	.	-	.	Parent=Os12t0561500-00
Chr12	irgsp1_rep	CDS	23000258	23000953	.	-	0	Parent=Os12t0561500-00
Chr12	irgsp1_rep	mRNA	23009303	23012933	.	-	.	ID=Os12t0561750-00;Name=Os12t0561750-00;Locus_id=Os12g0561750;Note=Similar to ferroportin protein family.;Transcript_evidence=BT062247 (DDBJ);ORF_evidence=XP_002330033.1 (RefSeq);TENOR=Os12t0561750-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	23012902	23012933	.	-	.	Parent=Os12t0561750-00
Chr12	irgsp1_rep	CDS	23012774	23012901	.	-	0	Parent=Os12t0561750-00
Chr12	irgsp1_rep	CDS	23012089	23012152	.	-	1	Parent=Os12t0561750-00
Chr12	irgsp1_rep	CDS	23010255	23010311	.	-	0	Parent=Os12t0561750-00
Chr12	irgsp1_rep	three_prime_UTR	23009826	23010254	.	-	.	Parent=Os12t0561750-00
Chr12	irgsp1_rep	three_prime_UTR	23009303	23009664	.	-	.	Parent=Os12t0561750-00
Chr12	irgsp1_rep	mRNA	23015929	23017657	.	-	.	ID=Os12t0561900-01;Name=Os12t0561900-01;Locus_id=Os12g0561900;Note=Similar to UDP-glucoronosyl and UDP-glucosyl transferase family protein%2C expressed.;Transcript_evidence=AK060965 (DDBJ%2C Best hit),AK121202 (DDBJ%2C Best hit);ORF_evidence=Q2QNK9 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring hexosyl groups (GO:0016758);InterPro=UDP-glucuronosyl/UDP-glucosyltransferase (IPR002213);NIAS_FLcDNA=006-202-B11,J023087K24;TENOR=Os12t0561900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	23016200	23017657	.	-	0	Parent=Os12t0561900-01
Chr12	irgsp1_rep	three_prime_UTR	23015929	23016199	.	-	.	Parent=Os12t0561900-01
Chr12	irgsp1_rep	mRNA	23030950	23035532	.	-	.	ID=Os12t0562100-01;Name=Os12t0562100-01;Locus_id=Os12g0562100;Note=Major facilitator superfamily%2C general substrate transporter domain containing protein.;Transcript_evidence=AK064831 (DDBJ%2C Best hit);ORF_evidence=XP_002330033.1 (RefSeq);GO=Biological Process: iron ion transmembrane transport (GO:0034755),Cellular Component: integral to membrane (GO:0016021),Molecular Function: iron ion transmembrane transporter activity (GO:0005381);InterPro=Ferroporti-1 (IPR009716),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J013000F11;Expression=AK064831;TENOR=Os12t0562100-01;KEGG=Os12t0562100-01
Chr12	irgsp1_rep	five_prime_UTR	23035324	23035532	.	-	.	Parent=Os12t0562100-01
Chr12	irgsp1_rep	CDS	23035175	23035323	.	-	0	Parent=Os12t0562100-01
Chr12	irgsp1_rep	CDS	23034350	23034554	.	-	1	Parent=Os12t0562100-01
Chr12	irgsp1_rep	CDS	23034204	23034267	.	-	0	Parent=Os12t0562100-01
Chr12	irgsp1_rep	CDS	23033792	23033916	.	-	2	Parent=Os12t0562100-01
Chr12	irgsp1_rep	CDS	23033623	23033712	.	-	0	Parent=Os12t0562100-01
Chr12	irgsp1_rep	CDS	23033330	23033509	.	-	0	Parent=Os12t0562100-01
Chr12	irgsp1_rep	CDS	23033059	23033133	.	-	0	Parent=Os12t0562100-01
Chr12	irgsp1_rep	CDS	23032778	23032879	.	-	0	Parent=Os12t0562100-01
Chr12	irgsp1_rep	CDS	23032575	23032683	.	-	0	Parent=Os12t0562100-01
Chr12	irgsp1_rep	CDS	23032354	23032500	.	-	2	Parent=Os12t0562100-01
Chr12	irgsp1_rep	CDS	23032169	23032275	.	-	2	Parent=Os12t0562100-01
Chr12	irgsp1_rep	CDS	23031971	23032084	.	-	0	Parent=Os12t0562100-01
Chr12	irgsp1_rep	CDS	23031571	23031875	.	-	0	Parent=Os12t0562100-01
Chr12	irgsp1_rep	CDS	23031262	23031265	.	-	1	Parent=Os12t0562100-01
Chr12	irgsp1_rep	three_prime_UTR	23030950	23031261	.	-	.	Parent=Os12t0562100-01
Chr12	irgsp1_rep	mRNA	23031399	23035443	.	-	.	ID=Os12t0562100-02;Name=Os12t0562100-02;Locus_id=Os12g0562100;Note=Similar to ferroportin protein family.;Transcript_evidence=AK065844 (DDBJ%2C Best hit);ORF_evidence=XP_002330033.1 (RefSeq);GO=Biological Process: iron ion transmembrane transport (GO:0034755),Cellular Component: integral to membrane (GO:0016021),Molecular Function: iron ion transmembrane transporter activity (GO:0005381);InterPro=Ferroporti-1 (IPR009716),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J013042H16;Expression=AK065844;TENOR=Os12t0562100-02;KEGG=Os12t0562100-02
Chr12	irgsp1_rep	five_prime_UTR	23035324	23035443	.	-	.	Parent=Os12t0562100-02
Chr12	irgsp1_rep	CDS	23035175	23035323	.	-	0	Parent=Os12t0562100-02
Chr12	irgsp1_rep	CDS	23034350	23034554	.	-	1	Parent=Os12t0562100-02
Chr12	irgsp1_rep	CDS	23034204	23034267	.	-	0	Parent=Os12t0562100-02
Chr12	irgsp1_rep	CDS	23033792	23033916	.	-	2	Parent=Os12t0562100-02
Chr12	irgsp1_rep	CDS	23033623	23033712	.	-	0	Parent=Os12t0562100-02
Chr12	irgsp1_rep	CDS	23033330	23033509	.	-	0	Parent=Os12t0562100-02
Chr12	irgsp1_rep	CDS	23033059	23033133	.	-	0	Parent=Os12t0562100-02
Chr12	irgsp1_rep	CDS	23032778	23032879	.	-	0	Parent=Os12t0562100-02
Chr12	irgsp1_rep	CDS	23032575	23032683	.	-	0	Parent=Os12t0562100-02
Chr12	irgsp1_rep	CDS	23032354	23032500	.	-	2	Parent=Os12t0562100-02
Chr12	irgsp1_rep	CDS	23032169	23032275	.	-	2	Parent=Os12t0562100-02
Chr12	irgsp1_rep	CDS	23031971	23032084	.	-	0	Parent=Os12t0562100-02
Chr12	irgsp1_rep	CDS	23031567	23031875	.	-	0	Parent=Os12t0562100-02
Chr12	irgsp1_rep	three_prime_UTR	23031399	23031566	.	-	.	Parent=Os12t0562100-02
Chr12	irgsp1_rep	mRNA	23037691	23038341	.	+	.	ID=Os12t0562166-00;Name=Os12t0562166-00;Locus_id=Os12g0562166;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);InterPro=Ribonuclease H1%2C N-terminal (IPR011320);TENOR=Os12t0562166-00
Chr12	irgsp1_rep	five_prime_UTR	23037691	23037694	.	+	.	Parent=Os12t0562166-00
Chr12	irgsp1_rep	CDS	23037695	23038324	.	+	0	Parent=Os12t0562166-00
Chr12	irgsp1_rep	three_prime_UTR	23038325	23038341	.	+	.	Parent=Os12t0562166-00
Chr12	irgsp1_rep	mRNA	23041106	23041442	.	-	.	ID=Os12t0562232-00;Name=Os12t0562232-00;Locus_id=Os12g0562232;Note=Hypothetical protein.;Transcript_evidence=BT084641 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0562232-00
Chr12	irgsp1_rep	five_prime_UTR	23041442	23041442	.	-	.	Parent=Os12t0562232-00
Chr12	irgsp1_rep	CDS	23041121	23041441	.	-	0	Parent=Os12t0562232-00
Chr12	irgsp1_rep	three_prime_UTR	23041106	23041120	.	-	.	Parent=Os12t0562232-00
Chr12	irgsp1_rep	mRNA	23042507	23045041	.	+	.	ID=Os12t0562300-01;Name=Os12t0562300-01;Locus_id=Os12g0562300;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK061984 (DDBJ%2C Best hit);ORF_evidence=B9GDS5 (UniProt);InterPro=Smr protein/MutS2 C-terminal (IPR002625);NIAS_FLcDNA=001-043-B01;Expression=AK061984;TENOR=Os12t0562300-01;KEGG=Os12t0562300-01
Chr12	irgsp1_rep	five_prime_UTR	23042507	23042508	.	+	.	Parent=Os12t0562300-01
Chr12	irgsp1_rep	CDS	23042509	23042768	.	+	0	Parent=Os12t0562300-01
Chr12	irgsp1_rep	CDS	23043216	23043429	.	+	1	Parent=Os12t0562300-01
Chr12	irgsp1_rep	CDS	23044181	23044365	.	+	0	Parent=Os12t0562300-01
Chr12	irgsp1_rep	CDS	23044538	23044799	.	+	1	Parent=Os12t0562300-01
Chr12	irgsp1_rep	three_prime_UTR	23044800	23045041	.	+	.	Parent=Os12t0562300-01
Chr12	irgsp1_rep	mRNA	23048705	23053244	.	+	.	ID=Os12t0562400-00;Name=Os12t0562400-00;Locus_id=Os12g0562400;CGSNL Gene Symbol=PLC3;CGSNL Gene Name=PHOSPHOLIPASE C3;Oryzabase Gene Symbol Synonym(s)=OsPLC3;Oryzabase Gene Name Synonym(s)=phospholipase C3;Note=Similar to Phospholipase C (Fragment).;Transcript_evidence=CT835563 (DDBJ%2C Best hit);ORF_evidence=B6SKE7 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Biological Process: signal transduction (GO:0007165),Biological Process: intracellular signal transduction (GO:0035556),Molecular Function: phosphatidylinositol phospholipase C activity (GO:0004435),Molecular Function: phospholipase C activity (GO:0004629),Molecular Function: protein binding (GO:0005515),Molecular Function: phosphoric diester hydrolase activity (GO:0008081);InterPro=C2 calcium-dependent membrane targeting (IPR000008),Phospholipase C%2C phosphatidylinositol-specific %2C X domain (IPR000909),Phosphoinositide phospholipase C (IPR001192),Phospholipase C%2C phosphatidylinositol-specific%2C Y domain (IPR001711),C2 calcium/lipid-binding domain%2C CaLB (IPR008973),PLC-like phosphodiesterase%2C TIM beta/alpha-barrel domain (IPR017946),C2 membrane targeting protein (IPR018029);Oryzabase=21656;TENOR=Os12t0562400-00;KEGG=Os12t0562400-00 (EC:3.1.4.11)
Chr12	irgsp1_rep	five_prime_UTR	23048705	23048933	.	+	.	Parent=Os12t0562400-00
Chr12	irgsp1_rep	CDS	23048934	23049260	.	+	0	Parent=Os12t0562400-00
Chr12	irgsp1_rep	CDS	23049704	23049900	.	+	0	Parent=Os12t0562400-00
Chr12	irgsp1_rep	CDS	23050703	23050838	.	+	1	Parent=Os12t0562400-00
Chr12	irgsp1_rep	CDS	23050915	23051151	.	+	0	Parent=Os12t0562400-00
Chr12	irgsp1_rep	CDS	23051242	23051465	.	+	0	Parent=Os12t0562400-00
Chr12	irgsp1_rep	CDS	23051791	23051908	.	+	1	Parent=Os12t0562400-00
Chr12	irgsp1_rep	CDS	23052437	23052676	.	+	0	Parent=Os12t0562400-00
Chr12	irgsp1_rep	CDS	23052780	23053073	.	+	0	Parent=Os12t0562400-00
Chr12	irgsp1_rep	three_prime_UTR	23053074	23053244	.	+	.	Parent=Os12t0562400-00
Chr12	irgsp1_rep	mRNA	23052585	23053083	.	-	.	ID=Os12t0562433-00;Name=Os12t0562433-00;Locus_id=Os12g0562433;Note=Hypothetical gene.;Transcript_evidence=AK248585 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0562433-00;KEGG=Os12t0562433-00
Chr12	irgsp1_rep	five_prime_UTR	23052945	23053083	.	-	.	Parent=Os12t0562433-00
Chr12	irgsp1_rep	CDS	23052717	23052944	.	-	0	Parent=Os12t0562433-00
Chr12	irgsp1_rep	three_prime_UTR	23052585	23052716	.	-	.	Parent=Os12t0562433-00
Chr12	irgsp1_rep	mRNA	23054216	23055920	.	-	.	ID=Os12t0562455-00;Name=Os12t0562455-00;Locus_id=Os12g0562455;Note=Non-protein coding transcript.;Transcript_evidence=tplb0025h13 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os12t0562455-00
Chr12	irgsp1_rep	exon	23054662	23055920	.	-	.	Parent=Os12t0562455-00
Chr12	irgsp1_rep	exon	23054216	23054394	.	-	.	Parent=Os12t0562455-00
Chr12	irgsp1_rep	mRNA	23061319	23067712	.	-	.	ID=Os12t0562477-00;Name=Os12t0562477-00;Locus_id=Os12g0562477;Note=Hypothetical protein.;Transcript_evidence=tplb0053f17 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0562477-00
Chr12	irgsp1_rep	five_prime_UTR	23067628	23067712	.	-	.	Parent=Os12t0562477-00
Chr12	irgsp1_rep	five_prime_UTR	23067340	23067455	.	-	.	Parent=Os12t0562477-00
Chr12	irgsp1_rep	five_prime_UTR	23066769	23066839	.	-	.	Parent=Os12t0562477-00
Chr12	irgsp1_rep	five_prime_UTR	23066295	23066595	.	-	.	Parent=Os12t0562477-00
Chr12	irgsp1_rep	five_prime_UTR	23065725	23065846	.	-	.	Parent=Os12t0562477-00
Chr12	irgsp1_rep	five_prime_UTR	23064686	23064844	.	-	.	Parent=Os12t0562477-00
Chr12	irgsp1_rep	five_prime_UTR	23063049	23063670	.	-	.	Parent=Os12t0562477-00
Chr12	irgsp1_rep	five_prime_UTR	23062527	23062937	.	-	.	Parent=Os12t0562477-00
Chr12	irgsp1_rep	CDS	23062485	23062526	.	-	0	Parent=Os12t0562477-00
Chr12	irgsp1_rep	CDS	23061672	23061734	.	-	0	Parent=Os12t0562477-00
Chr12	irgsp1_rep	CDS	23061319	23061537	.	-	0	Parent=Os12t0562477-00
Chr12	irgsp1_rep	mRNA	23061642	23065235	.	+	.	ID=Os12t0562500-00;Name=Os12t0562500-00;Locus_id=Os12g0562500;Note=Similar to Protein kinase-like protein (Fragment).;Transcript_evidence=AY224435 (DDBJ%2C Best hit);ORF_evidence=Q2QZP6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: protein phosphorylation (GO:0006468),Biological Process: signal transduction (GO:0007165),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=PAS (IPR000014),Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),PAC motif (IPR001610),Protein kinase-like domain (IPR011009),PAS fold (IPR013767);TENOR=Os12t0562500-00
Chr12	irgsp1_rep	five_prime_UTR	23061642	23061642	.	+	.	Parent=Os12t0562500-00
Chr12	irgsp1_rep	CDS	23061643	23061737	.	+	0	Parent=Os12t0562500-00
Chr12	irgsp1_rep	CDS	23062489	23062930	.	+	1	Parent=Os12t0562500-00
Chr12	irgsp1_rep	CDS	23063044	23063668	.	+	0	Parent=Os12t0562500-00
Chr12	irgsp1_rep	CDS	23064597	23064637	.	+	2	Parent=Os12t0562500-00
Chr12	irgsp1_rep	CDS	23064728	23064796	.	+	0	Parent=Os12t0562500-00
Chr12	irgsp1_rep	CDS	23065136	23065235	.	+	0	Parent=Os12t0562500-00
Chr12	irgsp1_rep	mRNA	23066858	23068433	.	+	.	ID=Os12t0562600-01;Name=Os12t0562600-01;Locus_id=Os12g0562600;Note=Similar to Protein kinase.;Transcript_evidence=AK100149 (DDBJ%2C Best hit);ORF_evidence=A2Q2V9 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672);InterPro=Serine-threonine/tyrosine-protein kinase (IPR001245);NIAS_FLcDNA=J023015A14;Expression=AK100149;TENOR=Os12t0562600-01;KEGG=Os12t0562600-01
Chr12	irgsp1_rep	five_prime_UTR	23066858	23067353	.	+	.	Parent=Os12t0562600-01
Chr12	irgsp1_rep	CDS	23067354	23067448	.	+	0	Parent=Os12t0562600-01
Chr12	irgsp1_rep	CDS	23067620	23067752	.	+	1	Parent=Os12t0562600-01
Chr12	irgsp1_rep	three_prime_UTR	23067753	23068433	.	+	.	Parent=Os12t0562600-01
Chr12	irgsp1_rep	mRNA	23071793	23077690	.	+	.	ID=Os12t0562700-00;Name=Os12t0562700-00;Locus_id=Os12g0562700;CGSNL Gene Symbol=MRP17;CGSNL Gene Name=MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 17;Oryzabase Gene Symbol Synonym(s)=OsABCC17%2C OsMRP17;Oryzabase Gene Name Synonym(s)=ABC transporter superfamily ABCC subgroup member 17%2C multidrug resistance-associated protein 17;Note=Hypothetical conserved gene.;Transcript_evidence=AK368184 (DDBJ);ORF_evidence=B9GDS7 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity (GO:0016887),Molecular Function: nucleoside-triphosphatase activity (GO:0017111),Molecular Function: ATPase activity%2C coupled to transmembrane movement of substances (GO:0042626);InterPro=ABC transporter%2C transmembrane domain (IPR001140),ABC transporter-like (IPR003439),ATPase%2C AAA+ type%2C core (IPR003593),ABC transporter%2C transmembrane domain%2C type 1 (IPR011527),ABC transporter%2C conserved site (IPR017871),ABC transporter%2C integral membrane type 1 (IPR017940);Oryzabase=11968;TENOR=Os12t0562700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	23071793	23071910	.	+	.	Parent=Os12t0562700-00
Chr12	irgsp1_rep	CDS	23071911	23073209	.	+	0	Parent=Os12t0562700-00
Chr12	irgsp1_rep	CDS	23073548	23073868	.	+	0	Parent=Os12t0562700-00
Chr12	irgsp1_rep	CDS	23073938	23074024	.	+	0	Parent=Os12t0562700-00
Chr12	irgsp1_rep	CDS	23074264	23074857	.	+	0	Parent=Os12t0562700-00
Chr12	irgsp1_rep	CDS	23074957	23075121	.	+	0	Parent=Os12t0562700-00
Chr12	irgsp1_rep	CDS	23075214	23075508	.	+	0	Parent=Os12t0562700-00
Chr12	irgsp1_rep	CDS	23075676	23075894	.	+	2	Parent=Os12t0562700-00
Chr12	irgsp1_rep	CDS	23076038	23076042	.	+	2	Parent=Os12t0562700-00
Chr12	irgsp1_rep	three_prime_UTR	23076043	23076343	.	+	.	Parent=Os12t0562700-00
Chr12	irgsp1_rep	three_prime_UTR	23076888	23076948	.	+	.	Parent=Os12t0562700-00
Chr12	irgsp1_rep	three_prime_UTR	23077033	23077272	.	+	.	Parent=Os12t0562700-00
Chr12	irgsp1_rep	three_prime_UTR	23077608	23077690	.	+	.	Parent=Os12t0562700-00
Chr12	irgsp1_rep	mRNA	23080046	23084534	.	+	.	ID=Os12t0562900-01;Name=Os12t0562900-01;Locus_id=Os12g0562900;Note=Prefoldin domain containing protein.;Transcript_evidence=AK059971 (DDBJ%2C Best hit),AK071387 (DDBJ%2C Best hit);ORF_evidence=B6TDI0 (UniProt);GO=Biological Process: protein folding (GO:0006457),Cellular Component: prefoldin complex (GO:0016272),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Prefoldin subunit (IPR004127),Prefoldin (IPR009053),Prefoldin%2C subunit 3 (IPR016655);NIAS_FLcDNA=006-211-H01,J023091J19;Expression=AK059971;TENOR=Os12t0562900-01;KEGG=Os12t0562900-01
Chr12	irgsp1_rep	five_prime_UTR	23080046	23080108	.	+	.	Parent=Os12t0562900-01
Chr12	irgsp1_rep	CDS	23080109	23080275	.	+	0	Parent=Os12t0562900-01
Chr12	irgsp1_rep	CDS	23082616	23082673	.	+	1	Parent=Os12t0562900-01
Chr12	irgsp1_rep	CDS	23082802	23082873	.	+	0	Parent=Os12t0562900-01
Chr12	irgsp1_rep	CDS	23083825	23083944	.	+	0	Parent=Os12t0562900-01
Chr12	irgsp1_rep	CDS	23084025	23084126	.	+	0	Parent=Os12t0562900-01
Chr12	irgsp1_rep	CDS	23084212	23084283	.	+	0	Parent=Os12t0562900-01
Chr12	irgsp1_rep	three_prime_UTR	23084284	23084534	.	+	.	Parent=Os12t0562900-01
Chr12	irgsp1_rep	mRNA	23080046	23082109	.	+	.	ID=Os12t0562900-02;Name=Os12t0562900-02;Locus_id=Os12g0562900;Note=Similar to prefoldin subunit 3.;Transcript_evidence=AK100001 (DDBJ%2C Best hit);ORF_evidence=NP_001150033.1 (RefSeq);InterPro=Prefoldin%2C subunit 3 (IPR016655);NIAS_FLcDNA=J013134P07;TENOR=Os12t0562900-02;KEGG=Os12t0562900-02
Chr12	irgsp1_rep	five_prime_UTR	23080046	23080108	.	+	.	Parent=Os12t0562900-02
Chr12	irgsp1_rep	CDS	23080109	23080285	.	+	0	Parent=Os12t0562900-02
Chr12	irgsp1_rep	three_prime_UTR	23080286	23082109	.	+	.	Parent=Os12t0562900-02
Chr12	irgsp1_rep	mRNA	23091540	23094141	.	+	.	ID=Os12t0563000-00;Name=Os12t0563000-00;Locus_id=Os12g0563000;Oryzabase Gene Symbol Synonym(s)=GPAT;Oryzabase Gene Name Synonym(s)=glycerol-3-phosphate acyltransferase;Note=Phospholipid/glycerol acyltransferase domain containing protein.;Transcript_evidence=AK377114 (DDBJ);ORF_evidence=NP_001067034.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: transferase activity%2C transferring acyl groups (GO:0016746);InterPro=Phospholipid/glycerol acyltransferase (IPR002123);Oryzabase=21979;TENOR=Os12t0563000-00;KEGG=Os12t0563000-00
Chr12	irgsp1_rep	CDS	23091540	23092394	.	+	0	Parent=Os12t0563000-00
Chr12	irgsp1_rep	CDS	23093224	23094141	.	+	0	Parent=Os12t0563000-00
Chr12	irgsp1_rep	mRNA	23095148	23095211	.	-	.	ID=Os12t0563100-00;Name=Os12t0563100-00;Locus_id=Os12g0563100;Note=Non-protein coding transcript.;Transcript_evidence=X06284 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0563100-00
Chr12	irgsp1_rep	exon	23095148	23095211	.	-	.	Parent=Os12t0563100-00
Chr12	irgsp1_rep	mRNA	23096994	23099367	.	-	.	ID=Os12t0563200-01;Name=Os12t0563200-01;Locus_id=Os12g0563200;RAP-DB Gene Symbol Synonym(s)=TCD11;RAP-DB Gene Name Synonym(s)=THERMO-SENSITIVE CHLOROPHYLL-DEFICIENT MUTANT 11%2C thermo-sensitive chlorophyll-deficient 11;CGSNL Gene Symbol=TCD11;CGSNL Gene Name=THERMO-SENSITIVE CHLOROPHYLL-DEFICIENT MUTANT 11;Oryzabase Gene Symbol Synonym(s)=RPS6%2C OsRPS6%2C OsTCD11;Oryzabase Gene Name Synonym(s)=thermo-sensitive chlorophyll-deficient mutant 11%2C plastid ribosomal protein S6;Note=Plastid ribosomal small subunit protein S6%2C Chloroplast development at low temperature;Transcript_evidence=Inferred from literature;ORF_evidence=Q2QNJ6;GO=Biological Process: translation (GO:0006412),Molecular Function: structural constituent of ribosome (GO:0003735),Molecular Function: rRNA binding (GO:0019843),Cellular Component: ribosome (GO:0005840);InterPro=Ribosomal protein S6 (IPR000529),Ribosomal protein S6%2C plastid/chloroplast (IPR020814),Translation elongation factor EF1B/ribosomal protein S6 (IPR014717),Ribosomal protein S6%2C conserved site (IPR020815);NIAS_FLcDNA=001-010-B11 (truncated);Manual Curation=June 23%2C 2017;Literature_PMID=28483049;Oryzabase=21696;Expression=AK060401;TENOR=Os12t0563200-01;KEGG=Os12t0563200-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.;Subcellular location=chloroplast (GO:0009507)
Chr12	irgsp1_rep	CDS	23099095	23099367	.	-	0	Parent=Os12t0563200-01
Chr12	irgsp1_rep	CDS	23098419	23098473	.	-	0	Parent=Os12t0563200-01
Chr12	irgsp1_rep	CDS	23098270	23098326	.	-	2	Parent=Os12t0563200-01
Chr12	irgsp1_rep	CDS	23098058	23098135	.	-	2	Parent=Os12t0563200-01
Chr12	irgsp1_rep	CDS	23097140	23097630	.	-	2	Parent=Os12t0563200-01
Chr12	irgsp1_rep	three_prime_UTR	23096994	23097139	.	-	.	Parent=Os12t0563200-01
Chr12	irgsp1_rep	mRNA	23099865	23100742	.	+	.	ID=Os12t0563300-00;Name=Os12t0563300-00;Locus_id=Os12g0563300;Note=Hypothetical conserved gene.;Transcript_evidence=AK359303 (DDBJ);ORF_evidence=XP_002883649.1 (RefSeq);TENOR=Os12t0563300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	23099865	23100068	.	+	0	Parent=Os12t0563300-00
Chr12	irgsp1_rep	CDS	23100183	23100593	.	+	0	Parent=Os12t0563300-00
Chr12	irgsp1_rep	three_prime_UTR	23100594	23100742	.	+	.	Parent=Os12t0563300-00
Chr12	irgsp1_rep	mRNA	23100078	23101121	.	-	.	ID=Os12t0563350-00;Name=Os12t0563350-00;Locus_id=Os12g0563350;Note=Conserved hypothetical protein.;Transcript_evidence=AK062544 (DDBJ%2C Secondary hit);ORF_evidence=B9FBE6 (UniProt);TENOR=Os12t0563350-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	23100758	23101121	.	-	.	Parent=Os12t0563350-00
Chr12	irgsp1_rep	CDS	23100428	23100757	.	-	0	Parent=Os12t0563350-00
Chr12	irgsp1_rep	three_prime_UTR	23100078	23100427	.	-	.	Parent=Os12t0563350-00
Chr12	irgsp1_rep	mRNA	23102049	23105182	.	+	.	ID=Os12t0563400-01;Name=Os12t0563400-01;Locus_id=Os12g0563400;CGSNL Gene Symbol=STR18;CGSNL Gene Name=SULFURTRANSFERASE 18;Oryzabase Gene Symbol Synonym(s)=OsStr18;Oryzabase Gene Name Synonym(s)=Sulfurtransferase 18;Note=Rhodanese-like domain containing protein.;Transcript_evidence=AK067785 (DDBJ%2C Best hit);ORF_evidence=B6TZ21 (UniProt);InterPro=Rhodanese-like (IPR001763),Serine hydrolase FSH (IPR005645);NIAS_FLcDNA=J013120E24;Oryzabase=12068;Expression=AK067785;TENOR=Os12t0563400-01;KEGG=Os12t0563400-01
Chr12	irgsp1_rep	five_prime_UTR	23102049	23102120	.	+	.	Parent=Os12t0563400-01
Chr12	irgsp1_rep	CDS	23102121	23102330	.	+	0	Parent=Os12t0563400-01
Chr12	irgsp1_rep	CDS	23102418	23102579	.	+	0	Parent=Os12t0563400-01
Chr12	irgsp1_rep	CDS	23102671	23102776	.	+	0	Parent=Os12t0563400-01
Chr12	irgsp1_rep	CDS	23102869	23103070	.	+	2	Parent=Os12t0563400-01
Chr12	irgsp1_rep	CDS	23103179	23103260	.	+	1	Parent=Os12t0563400-01
Chr12	irgsp1_rep	CDS	23103388	23103470	.	+	0	Parent=Os12t0563400-01
Chr12	irgsp1_rep	CDS	23103586	23103718	.	+	1	Parent=Os12t0563400-01
Chr12	irgsp1_rep	CDS	23103850	23104021	.	+	0	Parent=Os12t0563400-01
Chr12	irgsp1_rep	CDS	23104286	23105013	.	+	2	Parent=Os12t0563400-01
Chr12	irgsp1_rep	three_prime_UTR	23105014	23105182	.	+	.	Parent=Os12t0563400-01
Chr12	irgsp1_rep	mRNA	23106140	23111472	.	+	.	ID=Os12t0563500-01;Name=Os12t0563500-01;Locus_id=Os12g0563500;Note=Peptidase M24 family protein.;Transcript_evidence=AK102247 (DDBJ%2C Best hit);ORF_evidence=Q2QNJ2 (UniProt);GO=Biological Process: cellular process (GO:0009987),Molecular Function: aminopeptidase activity (GO:0004177),Molecular Function: manganese ion binding (GO:0030145);InterPro=Peptidase M24%2C structural domain (IPR000994),Peptidase M24B%2C X-Pro dipeptidase/aminopeptidase P N-terminal (IPR007865);NIAS_FLcDNA=J033088F06;Expression=AK102247;TENOR=Os12t0563500-01;KEGG=Os12t0563500-01
Chr12	irgsp1_rep	five_prime_UTR	23106140	23106210	.	+	.	Parent=Os12t0563500-01
Chr12	irgsp1_rep	CDS	23106211	23106258	.	+	0	Parent=Os12t0563500-01
Chr12	irgsp1_rep	CDS	23107232	23107336	.	+	0	Parent=Os12t0563500-01
Chr12	irgsp1_rep	CDS	23108174	23108437	.	+	0	Parent=Os12t0563500-01
Chr12	irgsp1_rep	CDS	23108516	23108608	.	+	0	Parent=Os12t0563500-01
Chr12	irgsp1_rep	CDS	23108738	23108944	.	+	0	Parent=Os12t0563500-01
Chr12	irgsp1_rep	CDS	23109512	23109615	.	+	0	Parent=Os12t0563500-01
Chr12	irgsp1_rep	CDS	23109793	23109859	.	+	1	Parent=Os12t0563500-01
Chr12	irgsp1_rep	CDS	23109933	23110040	.	+	0	Parent=Os12t0563500-01
Chr12	irgsp1_rep	CDS	23110122	23110214	.	+	0	Parent=Os12t0563500-01
Chr12	irgsp1_rep	CDS	23110300	23110390	.	+	0	Parent=Os12t0563500-01
Chr12	irgsp1_rep	CDS	23110480	23110550	.	+	2	Parent=Os12t0563500-01
Chr12	irgsp1_rep	CDS	23110778	23110906	.	+	0	Parent=Os12t0563500-01
Chr12	irgsp1_rep	CDS	23111016	23111123	.	+	0	Parent=Os12t0563500-01
Chr12	irgsp1_rep	three_prime_UTR	23111124	23111472	.	+	.	Parent=Os12t0563500-01
Chr12	irgsp1_rep	mRNA	23115491	23116535	.	+	.	ID=Os12t0563600-03;Name=Os12t0563600-03;Locus_id=Os12g0563600;Note=Protein of unknown function DUF538 family protein.;Transcript_evidence=AK069514 (DDBJ%2C Best hit),AK060891 (DDBJ%2C Best hit),AK105895 (DDBJ%2C Best hit),AK109434 (DDBJ%2C Best hit);ORF_evidence=A2ZLP6 (UniProt);InterPro=Protein of unknown function DUF538 (IPR007493);NIAS_FLcDNA=J023020B07,001-035-C01,001-204-E12,006-308-G11;Expression=AK069514;TENOR=Os12t0563600-03;KEGG=Os12t0563600-03
Chr12	irgsp1_rep	five_prime_UTR	23115491	23115580	.	+	.	Parent=Os12t0563600-03
Chr12	irgsp1_rep	CDS	23115581	23116192	.	+	0	Parent=Os12t0563600-03
Chr12	irgsp1_rep	three_prime_UTR	23116193	23116535	.	+	.	Parent=Os12t0563600-03
Chr12	irgsp1_rep	mRNA	23118859	23122699	.	-	.	ID=Os12t0563700-01;Name=Os12t0563700-01;Locus_id=Os12g0563700;CGSNL Gene Symbol=PME35;CGSNL Gene Name=PECTIN METHYLESTERASE 35;Oryzabase Gene Symbol Synonym(s)=OsPME35;Oryzabase Gene Name Synonym(s)=pectin methylesterase 35;Note=Pectin lyase fold domain containing protein.;Transcript_evidence=AK069927 (DDBJ%2C Best hit),AK099256 (DDBJ%2C Best hit);ORF_evidence=B8BMI9 (UniProt);GO=Biological Process: cell wall modification (GO:0042545),Cellular Component: cell wall (GO:0005618),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase%2C catalytic (IPR000070),Pectin lyase fold/virulence factor (IPR011050),Pectin lyase fold (IPR012334),Pectinesterase%2C active site (IPR018040);NIAS_FLcDNA=J023035H23,J023001F17;Oryzabase=13199;TENOR=Os12t0563700-01
Chr12	irgsp1_rep	five_prime_UTR	23122593	23122699	.	-	.	Parent=Os12t0563700-01
Chr12	irgsp1_rep	CDS	23122156	23122592	.	-	0	Parent=Os12t0563700-01
Chr12	irgsp1_rep	CDS	23121224	23121413	.	-	1	Parent=Os12t0563700-01
Chr12	irgsp1_rep	CDS	23120886	23121092	.	-	0	Parent=Os12t0563700-01
Chr12	irgsp1_rep	CDS	23119975	23120219	.	-	0	Parent=Os12t0563700-01
Chr12	irgsp1_rep	CDS	23119167	23119332	.	-	1	Parent=Os12t0563700-01
Chr12	irgsp1_rep	three_prime_UTR	23118859	23119166	.	-	.	Parent=Os12t0563700-01
Chr12	irgsp1_rep	mRNA	23135061	23137352	.	-	.	ID=Os12t0564100-01;Name=Os12t0564100-01;Locus_id=Os12g0564100;Oryzabase Gene Symbol Synonym(s)=R2R3-MYB;Note=Similar to Myb-like DNA-binding domain containing protein%2C expressed.;Transcript_evidence=AK072403 (DDBJ%2C Best hit);ORF_evidence=Q2QNI6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),MYB-like (IPR017877);NIAS_FLcDNA=J023080H01;Oryzabase=16292;TENOR=Os12t0564100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	23137205	23137352	.	-	.	Parent=Os12t0564100-01
Chr12	irgsp1_rep	CDS	23136863	23137204	.	-	0	Parent=Os12t0564100-01
Chr12	irgsp1_rep	three_prime_UTR	23135061	23136862	.	-	.	Parent=Os12t0564100-01
Chr12	irgsp1_rep	mRNA	23148319	23157101	.	+	.	ID=Os12t0564400-01;Name=Os12t0564400-01;Locus_id=Os12g0564400;Oryzabase Gene Symbol Synonym(s)=PsbP;Oryzabase Gene Name Synonym(s)=Oxygen-evolving complex protein PsbP;Note=Similar to Thylakoid lumenal 21.5 kDa protein%2C chloroplast precursor.;Transcript_evidence=AK104548 (DDBJ%2C Best hit),AK059949 (DDBJ%2C Best hit);ORF_evidence=E5LBM4 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: oxygen evolving complex (GO:0009654),Cellular Component: extrinsic to membrane (GO:0019898),Molecular Function: calcium ion binding (GO:0005509);InterPro=Photosystem II PsbP%2C oxygen evolving complex (IPR002683),Mog1/PsbP%2C alpha/beta/alpha sandwich (IPR016123),Mog1/PsbP/DUF1795%2C alpha/beta/alpha sandwich (IPR016124);NIAS_FLcDNA=006-305-C08,006-211-A10;Oryzabase=12438;Expression=AK104548;TENOR=Os12t0564400-01;KEGG=Os12t0564400-01
Chr12	irgsp1_rep	five_prime_UTR	23148319	23148344	.	+	.	Parent=Os12t0564400-01
Chr12	irgsp1_rep	CDS	23148345	23148453	.	+	0	Parent=Os12t0564400-01
Chr12	irgsp1_rep	CDS	23156109	23156530	.	+	2	Parent=Os12t0564400-01
Chr12	irgsp1_rep	CDS	23156693	23156911	.	+	0	Parent=Os12t0564400-01
Chr12	irgsp1_rep	three_prime_UTR	23156912	23157101	.	+	.	Parent=Os12t0564400-01
Chr12	irgsp1_rep	mRNA	23148319	23157116	.	+	.	ID=Os12t0564400-02;Name=Os12t0564400-02;Locus_id=Os12g0564400;Oryzabase Gene Symbol Synonym(s)=PsbP;Oryzabase Gene Name Synonym(s)=Oxygen-evolving complex protein PsbP;Note=Similar to PsbP.;Transcript_evidence=AK066183 (DDBJ%2C Best hit);ORF_evidence=E5LBM4 (UniProt);GO=Biological Process: photosynthesis (GO:0015979),Cellular Component: photosystem II (GO:0009523),Cellular Component: oxygen evolving complex (GO:0009654),Cellular Component: extrinsic to membrane (GO:0019898),Molecular Function: calcium ion binding (GO:0005509);InterPro=Photosystem II PsbP%2C oxygen evolving complex (IPR002683),Mog1/PsbP%2C alpha/beta/alpha sandwich (IPR016123),Mog1/PsbP/DUF1795%2C alpha/beta/alpha sandwich (IPR016124);NIAS_FLcDNA=J013056O11;Oryzabase=12438;TENOR=Os12t0564400-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	23148319	23148319	.	+	.	Parent=Os12t0564400-02
Chr12	irgsp1_rep	CDS	23148320	23148453	.	+	0	Parent=Os12t0564400-02
Chr12	irgsp1_rep	CDS	23156116	23156566	.	+	1	Parent=Os12t0564400-02
Chr12	irgsp1_rep	three_prime_UTR	23156567	23157116	.	+	.	Parent=Os12t0564400-02
Chr12	irgsp1_rep	mRNA	23157164	23164663	.	-	.	ID=Os12t0564600-01;Name=Os12t0564600-01;Locus_id=Os12g0564600;Oryzabase Gene Symbol Synonym(s)=BIP117;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 117%2C BRI1-interacting protein 117%2C brassinosteroid receptor kinase-interacting protein 117;Note=Zinc finger%2C CCHC-type domain containing protein.;Transcript_evidence=AK101383 (DDBJ%2C Best hit);ORF_evidence=XP_002865765.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Domain of unknown function DUF814 (IPR008532),Fibronectin-binding A%2C N-terminal (IPR008616),Zinc finger%2C CCHC retroviral-type (IPR013084),Protein of unknown function DUF3441 (IPR021846);NIAS_FLcDNA=J033036E24;Oryzabase=13698;Expression=AK101383;TENOR=Os12t0564600-01;KEGG=Os12t0564600-01
Chr12	irgsp1_rep	five_prime_UTR	23164591	23164663	.	-	.	Parent=Os12t0564600-01
Chr12	irgsp1_rep	CDS	23164486	23164590	.	-	0	Parent=Os12t0564600-01
Chr12	irgsp1_rep	CDS	23163656	23163768	.	-	0	Parent=Os12t0564600-01
Chr12	irgsp1_rep	CDS	23163458	23163554	.	-	1	Parent=Os12t0564600-01
Chr12	irgsp1_rep	CDS	23163225	23163349	.	-	0	Parent=Os12t0564600-01
Chr12	irgsp1_rep	CDS	23162419	23163019	.	-	1	Parent=Os12t0564600-01
Chr12	irgsp1_rep	CDS	23162068	23162253	.	-	0	Parent=Os12t0564600-01
Chr12	irgsp1_rep	CDS	23161691	23161984	.	-	0	Parent=Os12t0564600-01
Chr12	irgsp1_rep	CDS	23161024	23161176	.	-	0	Parent=Os12t0564600-01
Chr12	irgsp1_rep	CDS	23159897	23160051	.	-	0	Parent=Os12t0564600-01
Chr12	irgsp1_rep	CDS	23159547	23159652	.	-	1	Parent=Os12t0564600-01
Chr12	irgsp1_rep	CDS	23158543	23159454	.	-	0	Parent=Os12t0564600-01
Chr12	irgsp1_rep	CDS	23158384	23158465	.	-	0	Parent=Os12t0564600-01
Chr12	irgsp1_rep	CDS	23157776	23158132	.	-	2	Parent=Os12t0564600-01
Chr12	irgsp1_rep	CDS	23157477	23157670	.	-	2	Parent=Os12t0564600-01
Chr12	irgsp1_rep	three_prime_UTR	23157164	23157476	.	-	.	Parent=Os12t0564600-01
Chr12	irgsp1_rep	mRNA	23157167	23159222	.	-	.	ID=Os12t0564600-02;Name=Os12t0564600-02;Locus_id=Os12g0564600;Oryzabase Gene Symbol Synonym(s)=BIP117;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 117%2C BRI1-interacting protein 117%2C brassinosteroid receptor kinase-interacting protein 117;Note=Similar to BRI1-KD interacting protein 117 (Fragment).;Transcript_evidence=AK071954 (DDBJ%2C Best hit);ORF_evidence=Q761Z7 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Zinc finger%2C CCHC retroviral-type (IPR013084),Protein of unknown function DUF3441 (IPR021846);NIAS_FLcDNA=J013087F02;Oryzabase=13698;Expression=AK071954;TENOR=Os12t0564600-02;KEGG=Os12t0564600-02
Chr12	irgsp1_rep	five_prime_UTR	23159221	23159222	.	-	.	Parent=Os12t0564600-02
Chr12	irgsp1_rep	CDS	23158543	23159220	.	-	0	Parent=Os12t0564600-02
Chr12	irgsp1_rep	CDS	23158384	23158465	.	-	0	Parent=Os12t0564600-02
Chr12	irgsp1_rep	CDS	23157776	23158132	.	-	2	Parent=Os12t0564600-02
Chr12	irgsp1_rep	CDS	23157477	23157670	.	-	2	Parent=Os12t0564600-02
Chr12	irgsp1_rep	three_prime_UTR	23157167	23157476	.	-	.	Parent=Os12t0564600-02
Chr12	irgsp1_rep	mRNA	23157393	23162210	.	+	.	ID=Os12t0564701-00;Name=Os12t0564701-00;Locus_id=Os12g0564701;Note=Hypothetical protein.;Transcript_evidence=tplb0029h05 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0564701-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	23157393	23157670	.	+	.	Parent=Os12t0564701-00
Chr12	irgsp1_rep	five_prime_UTR	23157776	23158121	.	+	.	Parent=Os12t0564701-00
Chr12	irgsp1_rep	five_prime_UTR	23158368	23158465	.	+	.	Parent=Os12t0564701-00
Chr12	irgsp1_rep	five_prime_UTR	23158543	23158783	.	+	.	Parent=Os12t0564701-00
Chr12	irgsp1_rep	CDS	23158784	23159047	.	+	0	Parent=Os12t0564701-00
Chr12	irgsp1_rep	three_prime_UTR	23159048	23159452	.	+	.	Parent=Os12t0564701-00
Chr12	irgsp1_rep	three_prime_UTR	23159545	23159648	.	+	.	Parent=Os12t0564701-00
Chr12	irgsp1_rep	three_prime_UTR	23159888	23160043	.	+	.	Parent=Os12t0564701-00
Chr12	irgsp1_rep	three_prime_UTR	23161006	23161164	.	+	.	Parent=Os12t0564701-00
Chr12	irgsp1_rep	three_prime_UTR	23161677	23161967	.	+	.	Parent=Os12t0564701-00
Chr12	irgsp1_rep	three_prime_UTR	23162052	23162210	.	+	.	Parent=Os12t0564701-00
Chr12	irgsp1_rep	mRNA	23164447	23165549	.	+	.	ID=Os12t0564750-00;Name=Os12t0564750-00;Locus_id=Os12g0564750;Note=Conserved hypothetical protein.;Transcript_evidence=EU944560 (DDBJ);ORF_evidence=Q2QNI1 (UniProt);TENOR=Os12t0564750-00
Chr12	irgsp1_rep	CDS	23164447	23165523	.	+	0	Parent=Os12t0564750-00
Chr12	irgsp1_rep	three_prime_UTR	23165524	23165549	.	+	.	Parent=Os12t0564750-00
Chr12	irgsp1_rep	mRNA	23167167	23171951	.	-	.	ID=Os12t0564800-01;Name=Os12t0564800-01;Locus_id=Os12g0564800;Note=NB-ARC domain containing protein.;Transcript_evidence=AK103886 (DDBJ%2C Best hit);ORF_evidence=A3CIH5 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J033150C08;Expression=AK103886;TENOR=Os12t0564800-01;KEGG=Os12t0564800-01
Chr12	irgsp1_rep	five_prime_UTR	23171649	23171951	.	-	.	Parent=Os12t0564800-01
Chr12	irgsp1_rep	CDS	23171598	23171648	.	-	0	Parent=Os12t0564800-01
Chr12	irgsp1_rep	CDS	23169493	23170346	.	-	0	Parent=Os12t0564800-01
Chr12	irgsp1_rep	CDS	23167272	23169288	.	-	1	Parent=Os12t0564800-01
Chr12	irgsp1_rep	three_prime_UTR	23167167	23167271	.	-	.	Parent=Os12t0564800-01
Chr12	irgsp1_rep	mRNA	23167291	23170290	.	+	.	ID=Os12t0564866-00;Name=Os12t0564866-00;Locus_id=Os12g0564866;Note=Hypothetical protein.;Transcript_evidence=tplb0040n12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0564866-00
Chr12	irgsp1_rep	five_prime_UTR	23167291	23167983	.	+	.	Parent=Os12t0564866-00
Chr12	irgsp1_rep	CDS	23167984	23168313	.	+	0	Parent=Os12t0564866-00
Chr12	irgsp1_rep	three_prime_UTR	23168314	23169304	.	+	.	Parent=Os12t0564866-00
Chr12	irgsp1_rep	three_prime_UTR	23169507	23170290	.	+	.	Parent=Os12t0564866-00
Chr12	irgsp1_rep	mRNA	23172526	23172792	.	-	.	ID=Os12t0564932-00;Name=Os12t0564932-00;Locus_id=Os12g0564932;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os12t0564932-00
Chr12	irgsp1_rep	CDS	23172526	23172792	.	-	0	Parent=Os12t0564932-00
Chr12	irgsp1_rep	mRNA	23173178	23175919	.	+	.	ID=Os12t0565000-01;Name=Os12t0565000-01;Locus_id=Os12g0565000;Note=Conserved hypothetical protein.;Transcript_evidence=AK120758 (DDBJ%2C Best hit);ORF_evidence=B9GDT0 (UniProt);NIAS_FLcDNA=J023007F02;Expression=AK120758;TENOR=Os12t0565000-01;KEGG=Os12t0565000-01
Chr12	irgsp1_rep	five_prime_UTR	23173178	23173179	.	+	.	Parent=Os12t0565000-01
Chr12	irgsp1_rep	CDS	23173180	23173947	.	+	0	Parent=Os12t0565000-01
Chr12	irgsp1_rep	CDS	23174087	23174152	.	+	0	Parent=Os12t0565000-01
Chr12	irgsp1_rep	three_prime_UTR	23174153	23174505	.	+	.	Parent=Os12t0565000-01
Chr12	irgsp1_rep	three_prime_UTR	23175132	23175194	.	+	.	Parent=Os12t0565000-01
Chr12	irgsp1_rep	three_prime_UTR	23175560	23175632	.	+	.	Parent=Os12t0565000-01
Chr12	irgsp1_rep	three_prime_UTR	23175726	23175919	.	+	.	Parent=Os12t0565000-01
Chr12	irgsp1_rep	mRNA	23182563	23188498	.	+	.	ID=Os12t0565100-01;Name=Os12t0565100-01;Locus_id=Os12g0565100;Note=NB-ARC domain containing protein.;Transcript_evidence=AK065775 (DDBJ%2C Best hit);ORF_evidence=B9GDT1 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J013038N04;TENOR=Os12t0565100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	23182563	23182959	.	+	.	Parent=Os12t0565100-01
Chr12	irgsp1_rep	CDS	23184701	23185512	.	+	0	Parent=Os12t0565100-01
Chr12	irgsp1_rep	CDS	23186358	23187648	.	+	1	Parent=Os12t0565100-01
Chr12	irgsp1_rep	three_prime_UTR	23187649	23188498	.	+	.	Parent=Os12t0565100-01
Chr12	irgsp1_rep	mRNA	23182648	23187807	.	+	.	ID=Os12t0565100-02;Name=Os12t0565100-02;Locus_id=Os12g0565100;Note=NB-ARC domain containing protein.;Transcript_evidence=AK073176 (DDBJ%2C Best hit);ORF_evidence=Q2QNH8 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),NB-ARC (IPR002182);NIAS_FLcDNA=J033004J13;Expression=AK073176;TENOR=Os12t0565100-02;KEGG=Os12t0565100-02
Chr12	irgsp1_rep	five_prime_UTR	23182648	23182959	.	+	.	Parent=Os12t0565100-02
Chr12	irgsp1_rep	CDS	23184701	23185512	.	+	0	Parent=Os12t0565100-02
Chr12	irgsp1_rep	CDS	23186358	23187648	.	+	1	Parent=Os12t0565100-02
Chr12	irgsp1_rep	three_prime_UTR	23187649	23187807	.	+	.	Parent=Os12t0565100-02
Chr12	irgsp1_rep	mRNA	23184681	23188327	.	-	.	ID=Os12t0565133-00;Name=Os12t0565133-00;Locus_id=Os12g0565133;Note=Hypothetical protein.;Transcript_evidence=tplb0040n12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0565133-00
Chr12	irgsp1_rep	five_prime_UTR	23188295	23188327	.	-	.	Parent=Os12t0565133-00
Chr12	irgsp1_rep	CDS	23187791	23188294	.	-	0	Parent=Os12t0565133-00
Chr12	irgsp1_rep	three_prime_UTR	23186362	23187790	.	-	.	Parent=Os12t0565133-00
Chr12	irgsp1_rep	three_prime_UTR	23184681	23185517	.	-	.	Parent=Os12t0565133-00
Chr12	irgsp1_rep	mRNA	23192672	23195989	.	-	.	ID=Os12t0565166-00;Name=Os12t0565166-00;Locus_id=Os12g0565166;Note=Non-protein coding transcript.;Transcript_evidence=tplb0040n12 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os12t0565166-00
Chr12	irgsp1_rep	exon	23193975	23195989	.	-	.	Parent=Os12t0565166-00
Chr12	irgsp1_rep	exon	23192672	23193501	.	-	.	Parent=Os12t0565166-00
Chr12	irgsp1_rep	mRNA	23195145	23195981	.	+	.	ID=Os12t0565200-00;Name=Os12t0565200-00;Locus_id=Os12g0565200;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001067046.2 (RefSeq);TENOR=Os12t0565200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	23195145	23195981	.	+	0	Parent=Os12t0565200-00
Chr12	irgsp1_rep	mRNA	23196491	23200785	.	-	.	ID=Os12t0565300-01;Name=Os12t0565300-01;Locus_id=Os12g0565300;Note=Similar to Calmodulin-binding protein MPCBP.;Transcript_evidence=AK073968 (DDBJ%2C Best hit);ORF_evidence=B6U2D5 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J033071N15;Expression=AK073968;TENOR=Os12t0565300-01;KEGG=Os12t0565300-01
Chr12	irgsp1_rep	five_prime_UTR	23200679	23200785	.	-	.	Parent=Os12t0565300-01
Chr12	irgsp1_rep	CDS	23200430	23200678	.	-	0	Parent=Os12t0565300-01
Chr12	irgsp1_rep	CDS	23198996	23199251	.	-	0	Parent=Os12t0565300-01
Chr12	irgsp1_rep	CDS	23197709	23198919	.	-	2	Parent=Os12t0565300-01
Chr12	irgsp1_rep	CDS	23197279	23197426	.	-	0	Parent=Os12t0565300-01
Chr12	irgsp1_rep	CDS	23196798	23197114	.	-	2	Parent=Os12t0565300-01
Chr12	irgsp1_rep	three_prime_UTR	23196491	23196797	.	-	.	Parent=Os12t0565300-01
Chr12	irgsp1_rep	mRNA	23236120	23238595	.	+	.	ID=Os12t0565800-01;Name=Os12t0565800-01;Locus_id=Os12g0565800;Note=Conserved hypothetical protein.;Transcript_evidence=AK072828 (DDBJ%2C Best hit);ORF_evidence=XP_002445122.1 (RefSeq);NIAS_FLcDNA=J023136K21;TENOR=Os12t0565800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	23236120	23236295	.	+	.	Parent=Os12t0565800-01
Chr12	irgsp1_rep	five_prime_UTR	23236408	23236479	.	+	.	Parent=Os12t0565800-01
Chr12	irgsp1_rep	five_prime_UTR	23236573	23238176	.	+	.	Parent=Os12t0565800-01
Chr12	irgsp1_rep	CDS	23238177	23238296	.	+	0	Parent=Os12t0565800-01
Chr12	irgsp1_rep	three_prime_UTR	23238297	23238595	.	+	.	Parent=Os12t0565800-01
Chr12	irgsp1_rep	mRNA	23248824	23252014	.	+	.	ID=Os12t0566000-01;Name=Os12t0566000-01;Locus_id=Os12g0566000;CGSNL Gene Symbol=BOR1;CGSNL Gene Name=EFFLUX BORON TRANSPORTER 1;Oryzabase Gene Symbol Synonym(s)=OsBOR1;Oryzabase Gene Name Synonym(s)=Boron transporter 1;Note=Similar to Boron transporter.;Transcript_evidence=AK100510 (DDBJ%2C Best hit);ORF_evidence=Q7X9F3 (UniProt);GO=Biological Process: anion transport (GO:0006820),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: inorganic anion exchanger activity (GO:0005452);InterPro=Bicarbonate transporter%2C eukaryotic (IPR003020),Bicarbonate transporter%2C C-terminal (IPR011531);NIAS_FLcDNA=J023099M11;Oryzabase=7380;TENOR=Os12t0566000-01
Chr12	irgsp1_rep	five_prime_UTR	23248824	23249149	.	+	.	Parent=Os12t0566000-01
Chr12	irgsp1_rep	CDS	23249150	23249253	.	+	0	Parent=Os12t0566000-01
Chr12	irgsp1_rep	CDS	23249447	23249529	.	+	1	Parent=Os12t0566000-01
Chr12	irgsp1_rep	CDS	23249660	23249852	.	+	2	Parent=Os12t0566000-01
Chr12	irgsp1_rep	CDS	23249975	23250113	.	+	1	Parent=Os12t0566000-01
Chr12	irgsp1_rep	CDS	23250631	23250796	.	+	0	Parent=Os12t0566000-01
Chr12	irgsp1_rep	CDS	23250948	23251114	.	+	2	Parent=Os12t0566000-01
Chr12	irgsp1_rep	CDS	23251214	23251387	.	+	0	Parent=Os12t0566000-01
Chr12	irgsp1_rep	CDS	23251477	23251572	.	+	0	Parent=Os12t0566000-01
Chr12	irgsp1_rep	CDS	23251645	23251782	.	+	0	Parent=Os12t0566000-01
Chr12	irgsp1_rep	CDS	23251882	23252014	.	+	0	Parent=Os12t0566000-01
Chr12	irgsp1_rep	mRNA	23248827	23253304	.	+	.	ID=Os12t0566000-02;Name=Os12t0566000-02;Locus_id=Os12g0566000;RAP-DB Gene Symbol Synonym(s)=BOR1%2C OsBOR1;RAP-DB Gene Name Synonym(s)=EFFLUX BORON TRANSPORTER 1%2C Boron transporter 1;CGSNL Gene Symbol=BOR1;CGSNL Gene Name=EFFLUX BORON TRANSPORTER 1;Oryzabase Gene Symbol Synonym(s)=OsBOR1;Oryzabase Gene Name Synonym(s)=Boron transporter 1;Note=Boron (B) transporter%2C Boron uptake and xylem loading;Transcript_evidence=AK070617;ORF_evidence=Q2QNH0;GO=Biological Process: anion transport (GO:0006820),Molecular Function: inorganic anion exchanger activity (GO:0005452),Cellular Component: membrane (GO:0016020),Cellular Component: integral component of membrane (GO:0016021);InterPro=Bicarbonate transporter%2C eukaryotic (IPR003020),Bicarbonate transporter%2C C-terminal (IPR011531);NIAS_FLcDNA=J023062N03;Manual Curation=November 25%2C 2014;Literature_PMID=17675406;Oryzabase=7380;Expression=AK070617;TENOR=Os12t0566000-02;KEGG=Os12t0566000-02
Chr12	irgsp1_rep	five_prime_UTR	23248827	23249149	.	+	.	Parent=Os12t0566000-02
Chr12	irgsp1_rep	CDS	23249150	23249253	.	+	0	Parent=Os12t0566000-02
Chr12	irgsp1_rep	CDS	23249447	23249529	.	+	1	Parent=Os12t0566000-02
Chr12	irgsp1_rep	CDS	23249660	23249852	.	+	2	Parent=Os12t0566000-02
Chr12	irgsp1_rep	CDS	23249975	23250113	.	+	1	Parent=Os12t0566000-02
Chr12	irgsp1_rep	CDS	23250631	23250796	.	+	0	Parent=Os12t0566000-02
Chr12	irgsp1_rep	CDS	23250948	23251114	.	+	2	Parent=Os12t0566000-02
Chr12	irgsp1_rep	CDS	23251214	23251387	.	+	0	Parent=Os12t0566000-02
Chr12	irgsp1_rep	CDS	23251477	23251572	.	+	0	Parent=Os12t0566000-02
Chr12	irgsp1_rep	CDS	23251645	23251782	.	+	0	Parent=Os12t0566000-02
Chr12	irgsp1_rep	CDS	23251882	23252201	.	+	0	Parent=Os12t0566000-02
Chr12	irgsp1_rep	CDS	23252281	23252545	.	+	1	Parent=Os12t0566000-02
Chr12	irgsp1_rep	CDS	23252689	23252979	.	+	0	Parent=Os12t0566000-02
Chr12	irgsp1_rep	three_prime_UTR	23252980	23253304	.	+	.	Parent=Os12t0566000-02
Chr12	irgsp1_rep	mRNA	23251880	23253231	.	+	.	ID=Os12t0566000-03;Name=Os12t0566000-03;Locus_id=Os12g0566000;CGSNL Gene Symbol=BOR1;CGSNL Gene Name=EFFLUX BORON TRANSPORTER 1;Oryzabase Gene Symbol Synonym(s)=OsBOR1;Oryzabase Gene Name Synonym(s)=Boron transporter 1;Note=Similar to Boron transporter.;Transcript_evidence=AK060451 (DDBJ%2C Best hit);ORF_evidence=Q7X9F3 (UniProt);GO=Biological Process: anion transport (GO:0006820),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: inorganic anion exchanger activity (GO:0005452);InterPro=Bicarbonate transporter%2C eukaryotic (IPR003020),Bicarbonate transporter%2C C-terminal (IPR011531);NIAS_FLcDNA=001-011-G04;Oryzabase=7380;Expression=AK060451;TENOR=Os12t0566000-03;KEGG=Os12t0566000-03
Chr12	irgsp1_rep	five_prime_UTR	23251880	23251881	.	+	.	Parent=Os12t0566000-03
Chr12	irgsp1_rep	CDS	23251882	23252201	.	+	0	Parent=Os12t0566000-03
Chr12	irgsp1_rep	CDS	23252281	23252545	.	+	1	Parent=Os12t0566000-03
Chr12	irgsp1_rep	CDS	23252689	23252979	.	+	0	Parent=Os12t0566000-03
Chr12	irgsp1_rep	three_prime_UTR	23252980	23253231	.	+	.	Parent=Os12t0566000-03
Chr12	irgsp1_rep	mRNA	23249657	23252517	.	-	.	ID=Os12t0566050-00;Name=Os12t0566050-00;Locus_id=Os12g0566050;Note=Hypothetical protein.;Transcript_evidence=tplb0036c02 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0566050-00
Chr12	irgsp1_rep	five_prime_UTR	23252262	23252517	.	-	.	Parent=Os12t0566050-00
Chr12	irgsp1_rep	five_prime_UTR	23251757	23252182	.	-	.	Parent=Os12t0566050-00
Chr12	irgsp1_rep	five_prime_UTR	23251481	23251558	.	-	.	Parent=Os12t0566050-00
Chr12	irgsp1_rep	CDS	23251475	23251480	.	-	0	Parent=Os12t0566050-00
Chr12	irgsp1_rep	CDS	23251267	23251384	.	-	0	Parent=Os12t0566050-00
Chr12	irgsp1_rep	CDS	23251015	23251172	.	-	2	Parent=Os12t0566050-00
Chr12	irgsp1_rep	three_prime_UTR	23250795	23251014	.	-	.	Parent=Os12t0566050-00
Chr12	irgsp1_rep	three_prime_UTR	23249990	23250133	.	-	.	Parent=Os12t0566050-00
Chr12	irgsp1_rep	three_prime_UTR	23249657	23249875	.	-	.	Parent=Os12t0566050-00
Chr12	irgsp1_rep	mRNA	23256135	23258172	.	-	.	ID=Os12t0566100-00;Name=Os12t0566100-00;Locus_id=Os12g0566100;Note=Conserved hypothetical protein.;Transcript_evidence=CT835600 (DDBJ%2C Best hit);ORF_evidence=A3CII2 (UniProt);TENOR=Os12t0566100-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	23258164	23258172	.	-	.	Parent=Os12t0566100-00
Chr12	irgsp1_rep	CDS	23258077	23258163	.	-	0	Parent=Os12t0566100-00
Chr12	irgsp1_rep	CDS	23257537	23257581	.	-	0	Parent=Os12t0566100-00
Chr12	irgsp1_rep	CDS	23256572	23256669	.	-	0	Parent=Os12t0566100-00
Chr12	irgsp1_rep	CDS	23256397	23256469	.	-	1	Parent=Os12t0566100-00
Chr12	irgsp1_rep	three_prime_UTR	23256135	23256396	.	-	.	Parent=Os12t0566100-00
Chr12	irgsp1_rep	mRNA	23271514	23272915	.	+	.	ID=Os12t0566200-01;Name=Os12t0566200-01;Locus_id=Os12g0566200;Note=Conserved hypothetical protein.;Transcript_evidence=AK059568 (DDBJ%2C Best hit);ORF_evidence=Q2QNG8 (UniProt);NIAS_FLcDNA=001-029-H11;TENOR=Os12t0566200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	23271514	23271514	.	+	.	Parent=Os12t0566200-01
Chr12	irgsp1_rep	CDS	23271515	23272297	.	+	0	Parent=Os12t0566200-01
Chr12	irgsp1_rep	three_prime_UTR	23272298	23272915	.	+	.	Parent=Os12t0566200-01
Chr12	irgsp1_rep	mRNA	23270522	23272015	.	-	.	ID=Os12t0566250-01;Name=Os12t0566250-01;Locus_id=Os12g0566250;Note=Hypothetical protein.;Transcript_evidence=AK318540 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J075040F01;TENOR=Os12t0566250-01;KEGG=Os12t0566250-01
Chr12	irgsp1_rep	five_prime_UTR	23271974	23272015	.	-	.	Parent=Os12t0566250-01
Chr12	irgsp1_rep	CDS	23271683	23271973	.	-	0	Parent=Os12t0566250-01
Chr12	irgsp1_rep	three_prime_UTR	23270522	23271682	.	-	.	Parent=Os12t0566250-01
Chr12	irgsp1_rep	mRNA	23275214	23279087	.	+	.	ID=Os12t0566300-01;Name=Os12t0566300-01;Locus_id=Os12g0566300;RAP-DB Gene Symbol Synonym(s)=OsACL-A2%2C SPL30;RAP-DB Gene Name Synonym(s)=ATP-citrate lyase A2%2C spotted leaf 30;CGSNL Gene Symbol=ACLA2;CGSNL Gene Name=ATP-CITRATE LYASE A2;Oryzabase Gene Symbol Synonym(s)=SPL30%2C OsACL-A2%2C ACL-A2;Oryzabase Gene Name Synonym(s)=spotted leaf 30%2C ATP-citrate lyase A2;Note=Subunit A of the heteromeric ATP-citrate lyase%2C Negative regulation of cell death%2C Disease resistance;Transcript_evidence=AK071114,AK062236;ORF_evidence=Q2QNG7;GO=Molecular Function: ATP binding (GO:0005524);InterPro=ATP-grasp fold%2C subdomain 1 (IPR013815),Succinyl-CoA synthetase-like (IPR016102),ATP-grasp fold%2C succinyl-CoA synthetase-type (IPR013650),ATP-citrate synthase%2C citrate-binding domain (IPR032263);NIAS_FLcDNA=J023078F10,001-047-E02;Manual Curation=January 24%2C 2019;Literature_PMID=30582769;Oryzabase=22932;TENOR=Os12t0566300-01;Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737)
Chr12	irgsp1_rep	five_prime_UTR	23275214	23275349	.	+	.	Parent=Os12t0566300-01
Chr12	irgsp1_rep	CDS	23275350	23275448	.	+	0	Parent=Os12t0566300-01
Chr12	irgsp1_rep	CDS	23276569	23276745	.	+	0	Parent=Os12t0566300-01
Chr12	irgsp1_rep	CDS	23276830	23277072	.	+	0	Parent=Os12t0566300-01
Chr12	irgsp1_rep	CDS	23277253	23277304	.	+	0	Parent=Os12t0566300-01
Chr12	irgsp1_rep	CDS	23277388	23277502	.	+	2	Parent=Os12t0566300-01
Chr12	irgsp1_rep	CDS	23277597	23277678	.	+	1	Parent=Os12t0566300-01
Chr12	irgsp1_rep	CDS	23277819	23277914	.	+	0	Parent=Os12t0566300-01
Chr12	irgsp1_rep	CDS	23277998	23278099	.	+	0	Parent=Os12t0566300-01
Chr12	irgsp1_rep	CDS	23278184	23278298	.	+	0	Parent=Os12t0566300-01
Chr12	irgsp1_rep	CDS	23278403	23278521	.	+	2	Parent=Os12t0566300-01
Chr12	irgsp1_rep	CDS	23278686	23278757	.	+	0	Parent=Os12t0566300-01
Chr12	irgsp1_rep	three_prime_UTR	23278758	23279087	.	+	.	Parent=Os12t0566300-01
Chr12	irgsp1_rep	mRNA	23279939	23282625	.	+	.	ID=Os12t0566400-01;Name=Os12t0566400-01;Locus_id=Os12g0566400;Note=Magnesium transporter domain containing protein.;Transcript_evidence=AK101409 (DDBJ%2C Best hit),AK059104 (DDBJ%2C Best hit);ORF_evidence=A2ZLR2 (UniProt);InterPro=Magnesium transporter (IPR018937);NIAS_FLcDNA=J033037I18,001-022-D05;TENOR=Os12t0566400-01
Chr12	irgsp1_rep	five_prime_UTR	23279939	23280119	.	+	.	Parent=Os12t0566400-01
Chr12	irgsp1_rep	CDS	23280120	23280192	.	+	0	Parent=Os12t0566400-01
Chr12	irgsp1_rep	CDS	23280457	23280509	.	+	2	Parent=Os12t0566400-01
Chr12	irgsp1_rep	CDS	23281008	23281108	.	+	0	Parent=Os12t0566400-01
Chr12	irgsp1_rep	CDS	23282327	23282420	.	+	1	Parent=Os12t0566400-01
Chr12	irgsp1_rep	three_prime_UTR	23282421	23282625	.	+	.	Parent=Os12t0566400-01
Chr12	irgsp1_rep	mRNA	23290875	23292674	.	+	.	ID=Os12t0566500-01;Name=Os12t0566500-01;Locus_id=Os12g0566500;Note=Conserved hypothetical protein.;Transcript_evidence=AK059552 (DDBJ%2C Best hit);ORF_evidence=Q2QNG5 (UniProt);NIAS_FLcDNA=001-029-G04;TENOR=Os12t0566500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	23290875	23290876	.	+	.	Parent=Os12t0566500-01
Chr12	irgsp1_rep	CDS	23290877	23292247	.	+	0	Parent=Os12t0566500-01
Chr12	irgsp1_rep	three_prime_UTR	23292248	23292674	.	+	.	Parent=Os12t0566500-01
Chr12	irgsp1_rep	mRNA	23293462	23294241	.	+	.	ID=Os12t0566600-00;Name=Os12t0566600-00;Locus_id=Os12g0566600;Note=Similar to thioredoxin-related.;Transcript_evidence=CT835553 (DDBJ%2C Best hit);ORF_evidence=NP_001147397.1 (RefSeq);TENOR=Os12t0566600-00;KEGG=Os12t0566600-00
Chr12	irgsp1_rep	five_prime_UTR	23293462	23293635	.	+	.	Parent=Os12t0566600-00
Chr12	irgsp1_rep	CDS	23293636	23294022	.	+	0	Parent=Os12t0566600-00
Chr12	irgsp1_rep	three_prime_UTR	23294023	23294241	.	+	.	Parent=Os12t0566600-00
Chr12	irgsp1_rep	mRNA	23295081	23299184	.	-	.	ID=Os12t0566700-01;Name=Os12t0566700-01;Locus_id=Os12g0566700;CGSNL Gene Symbol=GELP114;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 114;Oryzabase Gene Symbol Synonym(s)=OsGELP114%2C OsGELP114a%2C OsGELP114b;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 114;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK060201 (DDBJ%2C Best hit);ORF_evidence=Q2QNG2 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=001-001-G04;Oryzabase=11064;Expression=AK060201;TENOR=Os12t0566700-01;KEGG=Os12t0566700-01
Chr12	irgsp1_rep	five_prime_UTR	23299081	23299184	.	-	.	Parent=Os12t0566700-01
Chr12	irgsp1_rep	CDS	23298771	23299080	.	-	0	Parent=Os12t0566700-01
Chr12	irgsp1_rep	CDS	23298405	23298538	.	-	2	Parent=Os12t0566700-01
Chr12	irgsp1_rep	CDS	23297150	23297386	.	-	0	Parent=Os12t0566700-01
Chr12	irgsp1_rep	CDS	23296406	23296658	.	-	0	Parent=Os12t0566700-01
Chr12	irgsp1_rep	CDS	23295405	23295679	.	-	2	Parent=Os12t0566700-01
Chr12	irgsp1_rep	three_prime_UTR	23295081	23295404	.	-	.	Parent=Os12t0566700-01
Chr12	irgsp1_rep	mRNA	23295081	23299157	.	-	.	ID=Os12t0566700-02;Name=Os12t0566700-02;Locus_id=Os12g0566700;CGSNL Gene Symbol=GELP114;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 114;Oryzabase Gene Symbol Synonym(s)=OsGELP114%2C OsGELP114a%2C OsGELP114b;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 114;Note=Similar to GDSL-like Lipase/Acylhydrolase family protein%2C expressed.;Transcript_evidence=AK059954 (DDBJ%2C Best hit);ORF_evidence=Q2QNG2 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: hydrolase activity%2C acting on ester bonds (GO:0016788);InterPro=Lipase%2C GDSL (IPR001087);NIAS_FLcDNA=006-211-C12;Oryzabase=11064;TENOR=Os12t0566700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	23299096	23299157	.	-	.	Parent=Os12t0566700-02
Chr12	irgsp1_rep	CDS	23299080	23299095	.	-	0	Parent=Os12t0566700-02
Chr12	irgsp1_rep	CDS	23298771	23298797	.	-	2	Parent=Os12t0566700-02
Chr12	irgsp1_rep	CDS	23298405	23298538	.	-	2	Parent=Os12t0566700-02
Chr12	irgsp1_rep	CDS	23297150	23297386	.	-	0	Parent=Os12t0566700-02
Chr12	irgsp1_rep	CDS	23296406	23296658	.	-	0	Parent=Os12t0566700-02
Chr12	irgsp1_rep	CDS	23295405	23295679	.	-	2	Parent=Os12t0566700-02
Chr12	irgsp1_rep	three_prime_UTR	23295081	23295404	.	-	.	Parent=Os12t0566700-02
Chr12	irgsp1_rep	mRNA	23294903	23299109	.	-	.	ID=Os12t0566700-03;Name=Os12t0566700-03;Locus_id=Os12g0566700;CGSNL Gene Symbol=GELP114;CGSNL Gene Name=GDSL ESTERASE/LIPASE PROTEIN 114;Oryzabase Gene Symbol Synonym(s)=OsGELP114%2C OsGELP114a%2C OsGELP114b;Oryzabase Gene Name Synonym(s)=GDSL esterase/lipase protein 114;Note=Lipase%2C GDSL domain containing protein.;Transcript_evidence=AK070277 (DDBJ%2C Best hit),AK071697 (DDBJ%2C Best hit);ORF_evidence=Q2QNG3 (UniProt);NIAS_FLcDNA=J023050D08,J023108M03;Oryzabase=11064;Expression=AK070277;TENOR=Os12t0566700-03;KEGG=Os12t0566700-03
Chr12	irgsp1_rep	five_prime_UTR	23299081	23299109	.	-	.	Parent=Os12t0566700-03
Chr12	irgsp1_rep	CDS	23298771	23299080	.	-	0	Parent=Os12t0566700-03
Chr12	irgsp1_rep	CDS	23298405	23298538	.	-	2	Parent=Os12t0566700-03
Chr12	irgsp1_rep	CDS	23297150	23297386	.	-	0	Parent=Os12t0566700-03
Chr12	irgsp1_rep	CDS	23296406	23296658	.	-	0	Parent=Os12t0566700-03
Chr12	irgsp1_rep	CDS	23295405	23295679	.	-	2	Parent=Os12t0566700-03
Chr12	irgsp1_rep	three_prime_UTR	23294903	23295404	.	-	.	Parent=Os12t0566700-03
Chr12	irgsp1_rep	mRNA	23302307	23306305	.	-	.	ID=Os12t0566800-01;Name=Os12t0566800-01;Locus_id=Os12g0566800;Note=Ion channel regulatory protein%2C UNC-93 domain containing protein.;Transcript_evidence=AK243100 (DDBJ%2C Best hit);ORF_evidence=B9GDU0 (UniProt);InterPro=Ion channel regulatory protein%2C UNC-93 (IPR010291);NIAS_FLcDNA=J100024N18;TENOR=Os12t0566800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	23306194	23306305	.	-	.	Parent=Os12t0566800-01
Chr12	irgsp1_rep	CDS	23306002	23306193	.	-	0	Parent=Os12t0566800-01
Chr12	irgsp1_rep	CDS	23305738	23305901	.	-	0	Parent=Os12t0566800-01
Chr12	irgsp1_rep	CDS	23305050	23305113	.	-	1	Parent=Os12t0566800-01
Chr12	irgsp1_rep	CDS	23304857	23304970	.	-	0	Parent=Os12t0566800-01
Chr12	irgsp1_rep	CDS	23304636	23304680	.	-	0	Parent=Os12t0566800-01
Chr12	irgsp1_rep	CDS	23303932	23303985	.	-	0	Parent=Os12t0566800-01
Chr12	irgsp1_rep	three_prime_UTR	23303754	23303931	.	-	.	Parent=Os12t0566800-01
Chr12	irgsp1_rep	three_prime_UTR	23303569	23303659	.	-	.	Parent=Os12t0566800-01
Chr12	irgsp1_rep	three_prime_UTR	23303237	23303349	.	-	.	Parent=Os12t0566800-01
Chr12	irgsp1_rep	three_prime_UTR	23303015	23303138	.	-	.	Parent=Os12t0566800-01
Chr12	irgsp1_rep	three_prime_UTR	23302307	23302868	.	-	.	Parent=Os12t0566800-01
Chr12	irgsp1_rep	mRNA	23307980	23315465	.	-	.	ID=Os12t0566900-01;Name=Os12t0566900-01;Locus_id=Os12g0566900;Note=Protein of unknown function DUF895%2C eukaryotic domain containing protein.;Transcript_evidence=AK064852 (DDBJ%2C Best hit);ORF_evidence=A2Q192 (UniProt);InterPro=Ion channel regulatory protein%2C UNC-93 (IPR010291),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J013000H05;Expression=AK064852;TENOR=Os12t0566900-01;KEGG=Os12t0566900-01
Chr12	irgsp1_rep	five_prime_UTR	23315414	23315465	.	-	.	Parent=Os12t0566900-01
Chr12	irgsp1_rep	CDS	23315195	23315413	.	-	0	Parent=Os12t0566900-01
Chr12	irgsp1_rep	CDS	23314912	23315075	.	-	0	Parent=Os12t0566900-01
Chr12	irgsp1_rep	CDS	23310663	23310726	.	-	1	Parent=Os12t0566900-01
Chr12	irgsp1_rep	CDS	23310470	23310583	.	-	0	Parent=Os12t0566900-01
Chr12	irgsp1_rep	CDS	23310272	23310316	.	-	0	Parent=Os12t0566900-01
Chr12	irgsp1_rep	CDS	23309394	23309629	.	-	0	Parent=Os12t0566900-01
Chr12	irgsp1_rep	CDS	23309210	23309300	.	-	1	Parent=Os12t0566900-01
Chr12	irgsp1_rep	CDS	23308879	23308991	.	-	0	Parent=Os12t0566900-01
Chr12	irgsp1_rep	CDS	23308657	23308780	.	-	1	Parent=Os12t0566900-01
Chr12	irgsp1_rep	CDS	23308328	23308510	.	-	0	Parent=Os12t0566900-01
Chr12	irgsp1_rep	three_prime_UTR	23307980	23308327	.	-	.	Parent=Os12t0566900-01
Chr12	irgsp1_rep	mRNA	23311350	23312202	.	-	.	ID=Os12t0567000-01;Name=Os12t0567000-01;Locus_id=Os12g0567000;Note=Ion channel regulatory protein%2C UNC-93 domain containing protein.;Transcript_evidence=AK109171 (DDBJ%2C Best hit);ORF_evidence=B9GDU0 (UniProt);InterPro=Ion channel regulatory protein%2C UNC-93 (IPR010291);NIAS_FLcDNA=002-155-H06;TENOR=Os12t0567000-01;KEGG=Os12t0567000-01
Chr12	irgsp1_rep	five_prime_UTR	23312153	23312202	.	-	.	Parent=Os12t0567000-01
Chr12	irgsp1_rep	CDS	23311955	23312152	.	-	0	Parent=Os12t0567000-01
Chr12	irgsp1_rep	CDS	23311517	23311840	.	-	0	Parent=Os12t0567000-01
Chr12	irgsp1_rep	three_prime_UTR	23311350	23311516	.	-	.	Parent=Os12t0567000-01
Chr12	irgsp1_rep	mRNA	23314776	23315728	.	+	.	ID=Os12t0567100-01;Name=Os12t0567100-01;Locus_id=Os12g0567100;Note=Non-protein coding transcript.;Transcript_evidence=AK107030 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-121-A11;TENOR=Os12t0567100-01
Chr12	irgsp1_rep	exon	23314776	23315066	.	+	.	Parent=Os12t0567100-01
Chr12	irgsp1_rep	exon	23315216	23315728	.	+	.	Parent=Os12t0567100-01
Chr12	irgsp1_rep	mRNA	23322008	23323517	.	+	.	ID=Os12t0567200-01;Name=Os12t0567200-01;Locus_id=Os12g0567200;Note=Non-protein coding transcript.;Transcript_evidence=AK242455 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080097I19;TENOR=Os12t0567200-01
Chr12	irgsp1_rep	exon	23322008	23322055	.	+	.	Parent=Os12t0567200-01
Chr12	irgsp1_rep	exon	23322995	23323517	.	+	.	Parent=Os12t0567200-01
Chr12	irgsp1_rep	mRNA	23325673	23327055	.	-	.	ID=Os12t0567300-00;Name=Os12t0567300-00;Locus_id=Os12g0567300;Oryzabase Gene Symbol Synonym(s)=R2R3-MYB%2C MYB48/59%2C OsMYB48/59;Note=Myb transcription factor domain containing protein.;Transcript_evidence=CT833282 (DDBJ%2C Best hit);ORF_evidence=Q4JL76 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Myb transcription factor (IPR015495),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);Oryzabase=16309;TENOR=Os12t0567300-00;KEGG=Os12t0567300-00
Chr12	irgsp1_rep	five_prime_UTR	23326844	23327055	.	-	.	Parent=Os12t0567300-00
Chr12	irgsp1_rep	CDS	23326723	23326843	.	-	0	Parent=Os12t0567300-00
Chr12	irgsp1_rep	CDS	23326465	23326594	.	-	2	Parent=Os12t0567300-00
Chr12	irgsp1_rep	CDS	23325898	23326375	.	-	1	Parent=Os12t0567300-00
Chr12	irgsp1_rep	three_prime_UTR	23325673	23325897	.	-	.	Parent=Os12t0567300-00
Chr12	irgsp1_rep	mRNA	23338183	23344857	.	-	.	ID=Os12t0567500-00;Name=Os12t0567500-00;Locus_id=Os12g0567500;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=AK365332 (DDBJ);ORF_evidence=NP_001177013.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635),Malectin-like carbohydrate-binding domain (IPR024788);TENOR=Os12t0567500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	23344309	23344857	.	-	0	Parent=Os12t0567500-00
Chr12	irgsp1_rep	CDS	23343174	23343367	.	-	0	Parent=Os12t0567500-00
Chr12	irgsp1_rep	CDS	23341498	23342000	.	-	1	Parent=Os12t0567500-00
Chr12	irgsp1_rep	CDS	23340807	23340945	.	-	2	Parent=Os12t0567500-00
Chr12	irgsp1_rep	CDS	23340630	23340701	.	-	1	Parent=Os12t0567500-00
Chr12	irgsp1_rep	CDS	23340370	23340441	.	-	1	Parent=Os12t0567500-00
Chr12	irgsp1_rep	CDS	23340212	23340292	.	-	1	Parent=Os12t0567500-00
Chr12	irgsp1_rep	CDS	23339866	23340035	.	-	1	Parent=Os12t0567500-00
Chr12	irgsp1_rep	CDS	23339544	23339779	.	-	2	Parent=Os12t0567500-00
Chr12	irgsp1_rep	CDS	23339336	23339462	.	-	0	Parent=Os12t0567500-00
Chr12	irgsp1_rep	CDS	23339002	23339070	.	-	2	Parent=Os12t0567500-00
Chr12	irgsp1_rep	CDS	23338183	23338895	.	-	2	Parent=Os12t0567500-00
Chr12	irgsp1_rep	mRNA	23349996	23351824	.	+	.	ID=Os12t0567700-01;Name=Os12t0567700-01;Locus_id=Os12g0567700;CGSNL Gene Symbol=RPL2;CGSNL Gene Name=RIBOSOMAL PROTEIN L2;Oryzabase Gene Symbol Synonym(s)=rpl2%2C rpl8%2C RPL8%2C OsRPL2%2C OsRPL8;Oryzabase Gene Name Synonym(s)=ribosomal protein L2%2C 60S ribosomal protein L2%2C ribosomal protein L8%2C 60S ribosomal protein L8;Note=Similar to 60S ribosomal protein L2 (Fragment).;Transcript_evidence=AK070647 (DDBJ%2C Best hit),AK104806 (DDBJ%2C Best hit);ORF_evidence=B6TGT0 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: intracellular (GO:0005622),Cellular Component: ribosome (GO:0005840),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L2 (IPR002171),Translation protein SH3-like (IPR008991),Nucleic acid-binding%2C OB-fold (IPR012340),Translation protein SH3-like%2C subgroup (IPR014722),Ribosomal protein L2%2C domain 3 (IPR014726),Nucleic acid-binding%2C OB-fold-like (IPR016027),Ribosomal Proteins L2%2C RNA binding domain (IPR022666),Ribosomal protein L2%2C C-terminal (IPR022669),Ribosomal protein L2%2C conserved site (IPR022671);NIAS_FLcDNA=J023063F19,001-040-E03;Oryzabase=16009;TENOR=Os12t0567700-01
Chr12	irgsp1_rep	five_prime_UTR	23349996	23350060	.	+	.	Parent=Os12t0567700-01
Chr12	irgsp1_rep	CDS	23350061	23350500	.	+	0	Parent=Os12t0567700-01
Chr12	irgsp1_rep	CDS	23351259	23351604	.	+	1	Parent=Os12t0567700-01
Chr12	irgsp1_rep	three_prime_UTR	23351605	23351824	.	+	.	Parent=Os12t0567700-01
Chr12	irgsp1_rep	mRNA	23352196	23353175	.	-	.	ID=Os12t0567800-01;Name=Os12t0567800-01;Locus_id=Os12g0567800;CGSNL Gene Symbol=MT1F;CGSNL Gene Name=METALLOTHIONEIN 1F;Oryzabase Gene Symbol Synonym(s)=OsMT1f%2C OsMT1c%2C MT1f%2C MT1c%2C MT1Lb%2C OsMT1Lb;Oryzabase Gene Name Synonym(s)=Metallothionein 1f%2C type 1 metallothionein f%2C Metallothionein type 1-like protein b;Note=Plant metallothionein%2C family 15 protein.;Transcript_evidence=AK243071 (DDBJ%2C Best hit);ORF_evidence=Q2QNC3 (UniProt);GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Metallothionein%2C family 15%2C plant (IPR000347);NIAS_FLcDNA=J100017F03;Oryzabase=11118;TENOR=Os12t0567800-01;KEGG=Os12t0567800-01
Chr12	irgsp1_rep	five_prime_UTR	23353101	23353175	.	-	.	Parent=Os12t0567800-01
Chr12	irgsp1_rep	CDS	23353045	23353100	.	-	0	Parent=Os12t0567800-01
Chr12	irgsp1_rep	CDS	23352683	23352766	.	-	1	Parent=Os12t0567800-01
Chr12	irgsp1_rep	CDS	23352419	23352515	.	-	1	Parent=Os12t0567800-01
Chr12	irgsp1_rep	three_prime_UTR	23352196	23352418	.	-	.	Parent=Os12t0567800-01
Chr12	irgsp1_rep	mRNA	23376363	23378129	.	-	.	ID=Os12t0568100-01;Name=Os12t0568100-01;Locus_id=Os12g0568100;Note=Similar to Zinc knuckle family protein%2C expressed.;Transcript_evidence=AK106437 (DDBJ%2C Best hit);ORF_evidence=Q2QNE9 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Zinc finger%2C CCHC retroviral-type (IPR013084);NIAS_FLcDNA=002-103-D05;TENOR=Os12t0568100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	23378129	23378129	.	-	.	Parent=Os12t0568100-01
Chr12	irgsp1_rep	CDS	23376635	23378128	.	-	0	Parent=Os12t0568100-01
Chr12	irgsp1_rep	three_prime_UTR	23376363	23376634	.	-	.	Parent=Os12t0568100-01
Chr12	irgsp1_rep	mRNA	23382984	23385840	.	+	.	ID=Os12t0568166-01;Name=Os12t0568166-01;Locus_id=Os12g0568166;Note=Conserved hypothetical protein.;Transcript_evidence=AK288523 (DDBJ%2C Best hit);ORF_evidence=A2X5Q0 (UniProt);NIAS_FLcDNA=J090044C01;TENOR=Os12t0568166-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	23382984	23382985	.	+	.	Parent=Os12t0568166-01
Chr12	irgsp1_rep	CDS	23382986	23383087	.	+	0	Parent=Os12t0568166-01
Chr12	irgsp1_rep	three_prime_UTR	23383088	23385840	.	+	.	Parent=Os12t0568166-01
Chr12	irgsp1_rep	mRNA	23383189	23384177	.	-	.	ID=Os12t0568200-01;Name=Os12t0568200-01;Locus_id=Os12g0568200;CGSNL Gene Symbol=MTI4B;CGSNL Gene Name=METALLOTHIONEIN I-4B;Oryzabase Gene Symbol Synonym(s)=OsMT1c%2C MT1c%2C OsMT-I-4b%2C MT-I-4b%2C OsMT1f%2C MT1f%2C MT1Lc%2C OsMT1Lc;Oryzabase Gene Name Synonym(s)=Metallothionein 1c%2C type 1 metallothionein c%2C Metallothionein type 1-like protein c;Note=Metallothionein-like protein type 1.;Transcript_evidence=AK243301 (DDBJ%2C Best hit);ORF_evidence=Q2QNE8 (UniProt);GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Metallothionein%2C family 15%2C plant (IPR000347);NIAS_FLcDNA=J100054G14;Oryzabase=11116;TENOR=Os12t0568200-01;KEGG=Os12t0568200-01
Chr12	irgsp1_rep	five_prime_UTR	23384106	23384177	.	-	.	Parent=Os12t0568200-01
Chr12	irgsp1_rep	CDS	23384050	23384105	.	-	0	Parent=Os12t0568200-01
Chr12	irgsp1_rep	CDS	23383724	23383807	.	-	1	Parent=Os12t0568200-01
Chr12	irgsp1_rep	CDS	23383470	23383569	.	-	1	Parent=Os12t0568200-01
Chr12	irgsp1_rep	three_prime_UTR	23383189	23383469	.	-	.	Parent=Os12t0568200-01
Chr12	irgsp1_rep	mRNA	23390252	23395621	.	+	.	ID=Os12t0568350-01;Name=Os12t0568350-01;Locus_id=Os12g0568350;Oryzabase Gene Symbol Synonym(s)=OsMTL1%2C MTL1;Oryzabase Gene Name Synonym(s)=METALLOTHIONEIN-LIKE PROTEIN 1;Note=Hypothetical gene.;Transcript_evidence=AK288568 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J090048B06;Oryzabase=20409;TENOR=Os12t0568350-01;KEGG=Os12t0568350-01
Chr12	irgsp1_rep	five_prime_UTR	23390252	23393514	.	+	.	Parent=Os12t0568350-01
Chr12	irgsp1_rep	CDS	23393515	23393865	.	+	0	Parent=Os12t0568350-01
Chr12	irgsp1_rep	three_prime_UTR	23393866	23395621	.	+	.	Parent=Os12t0568350-01
Chr12	irgsp1_rep	mRNA	23390501	23391407	.	-	.	ID=Os12t0568500-01;Name=Os12t0568500-01;Locus_id=Os12g0568500;Oryzabase Gene Symbol Synonym(s)=MT1Ld%2C OsMT1Ld;Oryzabase Gene Name Synonym(s)=Metallothionein type 1-like protein d;Note=Metallothionein-like protein type 1.;Transcript_evidence=AK243081 (DDBJ%2C Best hit);ORF_evidence=A2ZLT5 (UniProt);GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Metallothionein%2C family 15%2C plant (IPR000347);NIAS_FLcDNA=J100020I16;Oryzabase=22087;TENOR=Os12t0568500-01;KEGG=Os12t0568500-01
Chr12	irgsp1_rep	five_prime_UTR	23391339	23391407	.	-	.	Parent=Os12t0568500-01
Chr12	irgsp1_rep	CDS	23391283	23391338	.	-	0	Parent=Os12t0568500-01
Chr12	irgsp1_rep	CDS	23390909	23390992	.	-	1	Parent=Os12t0568500-01
Chr12	irgsp1_rep	CDS	23390698	23390797	.	-	1	Parent=Os12t0568500-01
Chr12	irgsp1_rep	three_prime_UTR	23390501	23390697	.	-	.	Parent=Os12t0568500-01
Chr12	irgsp1_rep	mRNA	23399038	23399785	.	+	.	ID=Os12t0568700-00;Name=Os12t0568700-00;Locus_id=Os12g0568700;Note=Uncharacterised protein family UPF0497%2C trans-membrane plant domain containing protein.;Transcript_evidence=EU958119 (DDBJ);ORF_evidence=NP_001067067.1 (RefSeq);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);TENOR=Os12t0568700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	23399038	23399355	.	+	0	Parent=Os12t0568700-00
Chr12	irgsp1_rep	CDS	23399429	23399785	.	+	0	Parent=Os12t0568700-00
Chr12	irgsp1_rep	mRNA	23404161	23406575	.	-	.	ID=Os12t0568750-00;Name=Os12t0568750-00;Locus_id=Os12g0568750;Note=Hypothetical protein.;Transcript_evidence=tplb0055o07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0568750-00
Chr12	irgsp1_rep	five_prime_UTR	23405349	23406575	.	-	.	Parent=Os12t0568750-00
Chr12	irgsp1_rep	CDS	23405100	23405348	.	-	0	Parent=Os12t0568750-00
Chr12	irgsp1_rep	three_prime_UTR	23404161	23405099	.	-	.	Parent=Os12t0568750-00
Chr12	irgsp1_rep	mRNA	23404675	23407835	.	+	.	ID=Os12t0568800-01;Name=Os12t0568800-01;Locus_id=Os12g0568800;Note=Similar to predicted protein.;Transcript_evidence=AK120538 (DDBJ%2C Best hit);ORF_evidence=Q8GTC5 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J013129D16;Expression=AK120538;TENOR=Os12t0568800-01;KEGG=Os12t0568800-01
Chr12	irgsp1_rep	CDS	23404675	23406587	.	+	0	Parent=Os12t0568800-01
Chr12	irgsp1_rep	CDS	23406693	23406891	.	+	1	Parent=Os12t0568800-01
Chr12	irgsp1_rep	three_prime_UTR	23406892	23407835	.	+	.	Parent=Os12t0568800-01
Chr12	irgsp1_rep	mRNA	23405408	23407853	.	+	.	ID=Os12t0568800-02;Name=Os12t0568800-02;Locus_id=Os12g0568800;Note=Similar to predicted protein.;Transcript_evidence=AK103854 (DDBJ%2C Best hit);ORF_evidence=Q8GTC5 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J033148M08;Expression=AK103854;TENOR=Os12t0568800-02;KEGG=Os12t0568800-02
Chr12	irgsp1_rep	five_prime_UTR	23405408	23405409	.	+	.	Parent=Os12t0568800-02
Chr12	irgsp1_rep	CDS	23405410	23406587	.	+	0	Parent=Os12t0568800-02
Chr12	irgsp1_rep	CDS	23406693	23406891	.	+	1	Parent=Os12t0568800-02
Chr12	irgsp1_rep	three_prime_UTR	23406892	23407853	.	+	.	Parent=Os12t0568800-02
Chr12	irgsp1_rep	mRNA	23407797	23408779	.	+	.	ID=Os12t0568800-03;Name=Os12t0568800-03;Locus_id=Os12g0568800;Note=Non-protein coding transcript.;Transcript_evidence=AK111292 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-181-A06;TENOR=Os12t0568800-03
Chr12	irgsp1_rep	exon	23407797	23408779	.	+	.	Parent=Os12t0568800-03
Chr12	irgsp1_rep	mRNA	23410052	23411077	.	+	.	ID=Os12t0568900-01;Name=Os12t0568900-01;Locus_id=Os12g0568900;Note=Thaumatin%2C pathogenesis-related family protein.;Transcript_evidence=AK068276 (DDBJ%2C Best hit);ORF_evidence=NP_001147009.1 (RefSeq);InterPro=Thaumatin%2C pathogenesis-related (IPR001938);NIAS_FLcDNA=J013136G04;Expression=AK068276;TENOR=Os12t0568900-01;KEGG=Os12t0568900-01
Chr12	irgsp1_rep	five_prime_UTR	23410052	23410089	.	+	.	Parent=Os12t0568900-01
Chr12	irgsp1_rep	CDS	23410090	23410782	.	+	0	Parent=Os12t0568900-01
Chr12	irgsp1_rep	three_prime_UTR	23410783	23411077	.	+	.	Parent=Os12t0568900-01
Chr12	irgsp1_rep	mRNA	23420042	23420841	.	+	.	ID=Os12t0569200-01;Name=Os12t0569200-01;Locus_id=Os12g0569200;Note=Conserved hypothetical protein.;Transcript_evidence=AK107485 (DDBJ%2C Best hit);ORF_evidence=A2ZLU1 (UniProt);NIAS_FLcDNA=002-129-C08;Expression=AK107485;TENOR=Os12t0569200-01;KEGG=Os12t0569200-01
Chr12	irgsp1_rep	five_prime_UTR	23420042	23420071	.	+	.	Parent=Os12t0569200-01
Chr12	irgsp1_rep	CDS	23420072	23420566	.	+	0	Parent=Os12t0569200-01
Chr12	irgsp1_rep	three_prime_UTR	23420567	23420841	.	+	.	Parent=Os12t0569200-01
Chr12	irgsp1_rep	mRNA	23427730	23428732	.	+	.	ID=Os12t0569300-01;Name=Os12t0569300-01;Locus_id=Os12g0569300;Note=Thaumatin%2C pathogenesis-related family protein.;Transcript_evidence=AK241550 (DDBJ%2C Best hit);ORF_evidence=NP_001147009.1 (RefSeq);InterPro=Thaumatin%2C pathogenesis-related (IPR001938);NIAS_FLcDNA=J065176M21;TENOR=Os12t0569300-01;KEGG=Os12t0569300-01
Chr12	irgsp1_rep	five_prime_UTR	23427730	23427779	.	+	.	Parent=Os12t0569300-01
Chr12	irgsp1_rep	CDS	23427780	23428481	.	+	0	Parent=Os12t0569300-01
Chr12	irgsp1_rep	three_prime_UTR	23428482	23428732	.	+	.	Parent=Os12t0569300-01
Chr12	irgsp1_rep	mRNA	23435458	23436485	.	+	.	ID=Os12t0569500-01;Name=Os12t0569500-01;Locus_id=Os12g0569500;Note=Thaumatin%2C pathogenesis-related family protein.;Transcript_evidence=AK066624 (DDBJ%2C Best hit);ORF_evidence=Q53NM3 (UniProt);InterPro=Thaumatin%2C pathogenesis-related (IPR001938);NIAS_FLcDNA=J013071O05;Expression=AK066624;TENOR=Os12t0569500-01;KEGG=Os12t0569500-01
Chr12	irgsp1_rep	five_prime_UTR	23435458	23435503	.	+	.	Parent=Os12t0569500-01
Chr12	irgsp1_rep	CDS	23435504	23436205	.	+	0	Parent=Os12t0569500-01
Chr12	irgsp1_rep	three_prime_UTR	23436206	23436485	.	+	.	Parent=Os12t0569500-01
Chr12	irgsp1_rep	mRNA	23442171	23447194	.	+	.	ID=Os12t0569700-01;Name=Os12t0569700-01;Locus_id=Os12g0569700;CGSNL Gene Symbol=HSP23.7;CGSNL Gene Name=23.7 KDA HEAT SHOCK PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsHsp23.7%2C OsHSP23.7;Oryzabase Gene Name Synonym(s)=23.7 kDa heat shock protein;Note=Similar to Heat shock protein 70.;Transcript_evidence=AK099797 (DDBJ%2C Best hit);ORF_evidence=Q40693 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Heat shock protein Hsp70 (IPR001023),Heat shock protein 70 (IPR013126);NIAS_FLcDNA=J013097I18;Oryzabase=10375;TENOR=Os12t0569700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	23442171	23444029	.	+	.	Parent=Os12t0569700-01
Chr12	irgsp1_rep	CDS	23444030	23444242	.	+	0	Parent=Os12t0569700-01
Chr12	irgsp1_rep	CDS	23445618	23445722	.	+	0	Parent=Os12t0569700-01
Chr12	irgsp1_rep	three_prime_UTR	23445723	23447194	.	+	.	Parent=Os12t0569700-01
Chr12	irgsp1_rep	mRNA	23442175	23442649	.	+	.	ID=Os12t0569700-02;Name=Os12t0569700-02;Locus_id=Os12g0569700;CGSNL Gene Symbol=HSP23.7;CGSNL Gene Name=23.7 KDA HEAT SHOCK PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsHsp23.7%2C OsHSP23.7;Oryzabase Gene Name Synonym(s)=23.7 kDa heat shock protein;Note=Non-protein coding transcript.;Transcript_evidence=AK062695 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-106-A08;Oryzabase=10375;TENOR=Os12t0569700-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	exon	23442175	23442649	.	+	.	Parent=Os12t0569700-02
Chr12	irgsp1_rep	mRNA	23445924	23446926	.	+	.	ID=Os12t0569700-03;Name=Os12t0569700-03;Locus_id=Os12g0569700;CGSNL Gene Symbol=HSP23.7;CGSNL Gene Name=23.7 KDA HEAT SHOCK PROTEIN;Oryzabase Gene Symbol Synonym(s)=OsHsp23.7%2C OsHSP23.7;Oryzabase Gene Name Synonym(s)=23.7 kDa heat shock protein;Note=Similar to Heat shock protein 70.;Transcript_evidence=AK060051 (DDBJ%2C Best hit);ORF_evidence=Q40693 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=Heat shock protein Hsp70 (IPR001023),Heat shock protein 70 (IPR013126);NIAS_FLcDNA=006-305-A04;Oryzabase=10375;TENOR=Os12t0569700-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	23445924	23445935	.	+	.	Parent=Os12t0569700-03
Chr12	irgsp1_rep	CDS	23445936	23446565	.	+	0	Parent=Os12t0569700-03
Chr12	irgsp1_rep	three_prime_UTR	23446566	23446926	.	+	.	Parent=Os12t0569700-03
Chr12	irgsp1_rep	mRNA	23445617	23446667	.	-	.	ID=Os12t0569800-00;Name=Os12t0569800-00;Locus_id=Os12g0569800;Note=Similar to Heat shock protein 70.;Transcript_evidence=tplb0059b11 (Wheat FLcDNA);ORF_evidence=Q40693 (UniProt);InterPro=Glutamate dehydrogenase%2C NAD-specific (IPR019651);TENOR=Os12t0569800-00
Chr12	irgsp1_rep	CDS	23446050	23446667	.	-	0	Parent=Os12t0569800-00
Chr12	irgsp1_rep	three_prime_UTR	23445617	23446049	.	-	.	Parent=Os12t0569800-00
Chr12	irgsp1_rep	mRNA	23458337	23460708	.	+	.	ID=Os12t0569900-01;Name=Os12t0569900-01;Locus_id=Os12g0569900;CGSNL Gene Symbol=DOF28;CGSNL Gene Name=DNA BINDING WITH ONE FINGER 28;Oryzabase Gene Symbol Synonym(s)=OsDof28%2C Dof28%2C OsDof-28;Oryzabase Gene Name Synonym(s)=Dof zinc factor 28%2C Dof transcription factor 28;Note=Similar to Zn finger protein (Fragment).;Transcript_evidence=AK288349 (DDBJ%2C Best hit);ORF_evidence=Q10NB0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C Dof-type (IPR003851);NIAS_FLcDNA=J090023P19;Oryzabase=8816;TENOR=Os12t0569900-01;KEGG=Os12t0569900-01
Chr12	irgsp1_rep	five_prime_UTR	23458337	23458939	.	+	.	Parent=Os12t0569900-01
Chr12	irgsp1_rep	CDS	23458940	23458990	.	+	0	Parent=Os12t0569900-01
Chr12	irgsp1_rep	CDS	23459375	23460370	.	+	0	Parent=Os12t0569900-01
Chr12	irgsp1_rep	three_prime_UTR	23460371	23460708	.	+	.	Parent=Os12t0569900-01
Chr12	irgsp1_rep	mRNA	23468302	23470284	.	-	.	ID=Os12t0570000-01;Name=Os12t0570000-01;Locus_id=Os12g0570000;CGSNL Gene Symbol=SPL11;CGSNL Gene Name=SPOTTED LEAF 11;Oryzabase Gene Symbol Synonym(s)=spl11%2C spl11*%2C OsPUB11%2C PUB11;Oryzabase Gene Name Synonym(s)=spotted leaf11%2C spotted leaf-11%2C Protein spotted leaf 11%2C Cell death-related protein SPL11%2C plant U-box-containing protein 11%2C U-box protein 11;Note=Armadillo-like helical domain containing protein.;Transcript_evidence=AK105835 (DDBJ%2C Best hit);ORF_evidence=Q0IMG9 (UniProt);GO=Biological Process: protein ubiquitination (GO:0016567),Cellular Component: ubiquitin ligase complex (GO:0000151),Molecular Function: ubiquitin-protein ligase activity (GO:0004842),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Armadillo (IPR000225),U box domain (IPR003613),Armadillo-like helical (IPR011989),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Armadillo-type fold (IPR016024);NIAS_FLcDNA=001-203-E11;Oryzabase=365;Expression=AK105835;TENOR=Os12t0570000-01;KEGG=Os12t0570000-01
Chr12	irgsp1_rep	five_prime_UTR	23470283	23470284	.	-	.	Parent=Os12t0570000-01
Chr12	irgsp1_rep	CDS	23469926	23470282	.	-	0	Parent=Os12t0570000-01
Chr12	irgsp1_rep	CDS	23468634	23469830	.	-	0	Parent=Os12t0570000-01
Chr12	irgsp1_rep	three_prime_UTR	23468302	23468633	.	-	.	Parent=Os12t0570000-01
Chr12	irgsp1_rep	mRNA	23468767	23473290	.	+	.	ID=Os12t0570075-00;Name=Os12t0570075-00;Locus_id=Os12g0570075;Note=Hypothetical protein.;Transcript_evidence=tplb0025i19 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0570075-00
Chr12	irgsp1_rep	five_prime_UTR	23468767	23468862	.	+	.	Parent=Os12t0570075-00
Chr12	irgsp1_rep	CDS	23468863	23469444	.	+	0	Parent=Os12t0570075-00
Chr12	irgsp1_rep	three_prime_UTR	23469445	23469828	.	+	.	Parent=Os12t0570075-00
Chr12	irgsp1_rep	three_prime_UTR	23469918	23470341	.	+	.	Parent=Os12t0570075-00
Chr12	irgsp1_rep	three_prime_UTR	23470438	23470556	.	+	.	Parent=Os12t0570075-00
Chr12	irgsp1_rep	three_prime_UTR	23473035	23473290	.	+	.	Parent=Os12t0570075-00
Chr12	irgsp1_rep	mRNA	23484809	23485684	.	-	.	ID=Os12t0570300-01;Name=Os12t0570300-01;Locus_id=Os12g0570300;Note=Conserved hypothetical protein.;Transcript_evidence=AK108513 (DDBJ%2C Best hit);ORF_evidence=A2ZLU8 (UniProt);NIAS_FLcDNA=002-144-A07;Expression=AK108513;TENOR=Os12t0570300-01;KEGG=Os12t0570300-01
Chr12	irgsp1_rep	five_prime_UTR	23485562	23485684	.	-	.	Parent=Os12t0570300-01
Chr12	irgsp1_rep	CDS	23484980	23485561	.	-	0	Parent=Os12t0570300-01
Chr12	irgsp1_rep	three_prime_UTR	23484809	23484979	.	-	.	Parent=Os12t0570300-01
Chr12	irgsp1_rep	mRNA	23491876	23492991	.	+	.	ID=Os12t0570400-00;Name=Os12t0570400-00;Locus_id=Os12g0570400;Note=Conserved hypothetical protein.;Transcript_evidence=CT837862 (DDBJ%2C Best hit);ORF_evidence=NP_001067079.1 (RefSeq);TENOR=Os12t0570400-00;KEGG=Os12t0570400-00
Chr12	irgsp1_rep	five_prime_UTR	23491876	23491931	.	+	.	Parent=Os12t0570400-00
Chr12	irgsp1_rep	CDS	23491932	23492020	.	+	0	Parent=Os12t0570400-00
Chr12	irgsp1_rep	CDS	23492096	23492546	.	+	1	Parent=Os12t0570400-00
Chr12	irgsp1_rep	three_prime_UTR	23492547	23492991	.	+	.	Parent=Os12t0570400-00
Chr12	irgsp1_rep	mRNA	23494449	23499242	.	+	.	ID=Os12t0570500-01;Name=Os12t0570500-01;Locus_id=Os12g0570500;Oryzabase Gene Symbol Synonym(s)=OsSTA286;Note=Glycoside hydrolase%2C family 5%2C conserved site domain containing protein.;Transcript_evidence=AK100336 (DDBJ%2C Best hit);ORF_evidence=A3CIL5 (UniProt);InterPro=Protein of unknown function DUF3741 (IPR022212);NIAS_FLcDNA=J023081D10;Oryzabase=19540;Expression=AK100336;TENOR=Os12t0570500-01;KEGG=Os12t0570500-01
Chr12	irgsp1_rep	five_prime_UTR	23494449	23494571	.	+	.	Parent=Os12t0570500-01
Chr12	irgsp1_rep	five_prime_UTR	23495365	23495375	.	+	.	Parent=Os12t0570500-01
Chr12	irgsp1_rep	CDS	23495376	23495520	.	+	0	Parent=Os12t0570500-01
Chr12	irgsp1_rep	CDS	23495741	23495793	.	+	2	Parent=Os12t0570500-01
Chr12	irgsp1_rep	CDS	23496085	23497432	.	+	0	Parent=Os12t0570500-01
Chr12	irgsp1_rep	CDS	23497512	23497682	.	+	2	Parent=Os12t0570500-01
Chr12	irgsp1_rep	CDS	23498030	23498889	.	+	2	Parent=Os12t0570500-01
Chr12	irgsp1_rep	three_prime_UTR	23498890	23499242	.	+	.	Parent=Os12t0570500-01
Chr12	irgsp1_rep	mRNA	23494475	23499181	.	-	.	ID=Os12t0570600-00;Name=Os12t0570600-00;Locus_id=Os12g0570600;Note=Hypothetical protein.;Transcript_evidence=tplb0029d14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0570600-00
Chr12	irgsp1_rep	five_prime_UTR	23499017	23499181	.	-	.	Parent=Os12t0570600-00
Chr12	irgsp1_rep	five_prime_UTR	23498665	23498909	.	-	.	Parent=Os12t0570600-00
Chr12	irgsp1_rep	CDS	23498299	23498664	.	-	0	Parent=Os12t0570600-00
Chr12	irgsp1_rep	three_prime_UTR	23498025	23498298	.	-	.	Parent=Os12t0570600-00
Chr12	irgsp1_rep	three_prime_UTR	23497509	23497673	.	-	.	Parent=Os12t0570600-00
Chr12	irgsp1_rep	three_prime_UTR	23496041	23497429	.	-	.	Parent=Os12t0570600-00
Chr12	irgsp1_rep	three_prime_UTR	23495354	23495528	.	-	.	Parent=Os12t0570600-00
Chr12	irgsp1_rep	three_prime_UTR	23494475	23494559	.	-	.	Parent=Os12t0570600-00
Chr12	irgsp1_rep	mRNA	23501423	23502359	.	+	.	ID=Os12t0570700-01;Name=Os12t0570700-01;Locus_id=Os12g0570700;CGSNL Gene Symbol=MTI4A;CGSNL Gene Name=METALLOTHIONEIN I-4A;Oryzabase Gene Symbol Synonym(s)=OsMT1a%2C OsMT1a1%2C OsMT1a2%2C OsMT-I-4a%2C OsIDS1%2C OsMT1b%2C MT1b;Oryzabase Gene Name Synonym(s)=Metallothionein 1a%2C type 1 metallothionein a1%2C type 1 metallothionein a2%2C Metallothionein protein OsIDS1;Note=Similar to Metallothionein-like protein type 1.;Transcript_evidence=AK103445 (DDBJ%2C Best hit);ORF_evidence=A6N134 (UniProt);GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Metallothionein%2C family 15%2C plant (IPR000347);NIAS_FLcDNA=J033129F19;Oryzabase=11114;Expression=AK103445;TENOR=Os12t0570700-01;KEGG=Os12t0570700-01
Chr12	irgsp1_rep	five_prime_UTR	23501423	23501502	.	+	.	Parent=Os12t0570700-01
Chr12	irgsp1_rep	CDS	23501503	23501564	.	+	0	Parent=Os12t0570700-01
Chr12	irgsp1_rep	CDS	23501796	23501873	.	+	1	Parent=Os12t0570700-01
Chr12	irgsp1_rep	CDS	23501980	23502076	.	+	1	Parent=Os12t0570700-01
Chr12	irgsp1_rep	three_prime_UTR	23502077	23502359	.	+	.	Parent=Os12t0570700-01
Chr12	irgsp1_rep	mRNA	23512501	23513406	.	+	.	ID=Os12t0571000-01;Name=Os12t0571000-01;Locus_id=Os12g0571000;CGSNL Gene Symbol=MT1G;CGSNL Gene Name=METALLOTHIONEIN 1G;Oryzabase Gene Symbol Synonym(s)=OsMT1g%2C MT1g%2C MT1Le%2C OsMT1Le;Oryzabase Gene Name Synonym(s)=Metallothionein 1g%2C type 1 metallothionein g%2C Metallothionein type 1-like protein e;Note=Metallothionein-like protein type 1.;Transcript_evidence=AK241023 (DDBJ%2C Best hit);ORF_evidence=Q2QNE8 (UniProt);GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Metallothionein%2C family 15%2C plant (IPR000347);NIAS_FLcDNA=J065056K16;Oryzabase=11119;TENOR=Os12t0571000-01;KEGG=Os12t0571000-01
Chr12	irgsp1_rep	five_prime_UTR	23512501	23512585	.	+	.	Parent=Os12t0571000-01
Chr12	irgsp1_rep	CDS	23512586	23512632	.	+	0	Parent=Os12t0571000-01
Chr12	irgsp1_rep	CDS	23512901	23512984	.	+	1	Parent=Os12t0571000-01
Chr12	irgsp1_rep	CDS	23513121	23513220	.	+	1	Parent=Os12t0571000-01
Chr12	irgsp1_rep	three_prime_UTR	23513221	23513406	.	+	.	Parent=Os12t0571000-01
Chr12	irgsp1_rep	mRNA	23515075	23516013	.	+	.	ID=Os12t0571100-01;Name=Os12t0571100-01;Locus_id=Os12g0571100;RAP-DB Gene Symbol Synonym(s)=MTI4C%2C MT-1-4b%2C OsMT1d%2C OsMT-I-4c;RAP-DB Gene Name Synonym(s)=METALLOTHIONEIN I-4C%2C metallochionein 1-4b%2C Metallothionein 1d%2C type 1 metallothionein d;CGSNL Gene Symbol=MTI4C;CGSNL Gene Name=METALLOTHIONEIN I-4C;Oryzabase Gene Symbol Synonym(s)=MT-1-4b%2C OsMT1d%2C MT1d%2C OsMT-I-4c%2C MT1c%2C OsMT1c;Oryzabase Gene Name Synonym(s)=metallochionein 1-4b%2C Metallothionein 1d%2C type 1 metallothionein d;Note=Metallothionein-like protein%2C ROS (reactive oxygen species) scavenger%2C Antioxidant;Transcript_evidence=AK105219;ORF_evidence=Q2QNC3;GO=Molecular Function: metal ion binding (GO:0046872);InterPro=Metallothionein%2C family 15%2C plant (IPR000347);NIAS_FLcDNA=001-110-E07;Manual Curation=July 13%2C 2015;Literature_PMID=17002881,25081037;Oryzabase=9280;Expression=AK105219;TENOR=Os12t0571100-01;KEGG=Os12t0571100-01
Chr12	irgsp1_rep	five_prime_UTR	23515075	23515146	.	+	.	Parent=Os12t0571100-01
Chr12	irgsp1_rep	CDS	23515147	23515202	.	+	0	Parent=Os12t0571100-01
Chr12	irgsp1_rep	CDS	23515446	23515529	.	+	1	Parent=Os12t0571100-01
Chr12	irgsp1_rep	CDS	23515680	23515776	.	+	1	Parent=Os12t0571100-01
Chr12	irgsp1_rep	three_prime_UTR	23515777	23516013	.	+	.	Parent=Os12t0571100-01
Chr12	irgsp1_rep	mRNA	23516655	23518441	.	+	.	ID=Os12t0571200-01;Name=Os12t0571200-01;Locus_id=Os12g0571200;Note=Similar to Mitochondrial import inner membrane translocase subunit Tim9.;Transcript_evidence=AK120784 (DDBJ%2C Best hit);ORF_evidence=A6MZE3 (UniProt);GO=Biological Process: protein targeting to mitochondrion (GO:0006626),Biological Process: protein import into mitochondrial inner membrane (GO:0045039),Cellular Component: mitochondrial intermembrane space protein transporter complex (GO:0042719);InterPro=Mitochondrial inner membrane translocase complex%2C Tim8/9/10/13-zinc finger-like (IPR004217);NIAS_FLcDNA=J023010F14;Expression=AK120784;TENOR=Os12t0571200-01;KEGG=Os12t0571200-01
Chr12	irgsp1_rep	five_prime_UTR	23516655	23516733	.	+	.	Parent=Os12t0571200-01
Chr12	irgsp1_rep	CDS	23516734	23516828	.	+	0	Parent=Os12t0571200-01
Chr12	irgsp1_rep	CDS	23517975	23518161	.	+	1	Parent=Os12t0571200-01
Chr12	irgsp1_rep	three_prime_UTR	23518162	23518441	.	+	.	Parent=Os12t0571200-01
Chr12	irgsp1_rep	mRNA	23519969	23521221	.	-	.	ID=Os12t0571300-01;Name=Os12t0571300-01;Locus_id=Os12g0571300;Note=Conserved hypothetical protein.;Transcript_evidence=AK110663 (DDBJ%2C Best hit);ORF_evidence=B8BML5 (UniProt);NIAS_FLcDNA=002-169-F05;Expression=AK110663;TENOR=Os12t0571300-01;KEGG=Os12t0571300-01
Chr12	irgsp1_rep	five_prime_UTR	23521130	23521221	.	-	.	Parent=Os12t0571300-01
Chr12	irgsp1_rep	CDS	23520371	23521129	.	-	0	Parent=Os12t0571300-01
Chr12	irgsp1_rep	three_prime_UTR	23519969	23520370	.	-	.	Parent=Os12t0571300-01
Chr12	irgsp1_rep	mRNA	23524209	23524834	.	+	.	ID=Os12t0571400-00;Name=Os12t0571400-00;Locus_id=Os12g0571400;CGSNL Gene Symbol=RALF39;CGSNL Gene Name=RAPID ALKALIZATION FACTOR 39;Oryzabase Gene Symbol Synonym(s)=OsRALF-39%2C OsRALF39%2C RALF-39;Oryzabase Gene Name Synonym(s)=Rapid alkalization factor 39;Note=Conserved hypothetical protein.;Transcript_evidence=CT835579 (DDBJ%2C Best hit);ORF_evidence=NP_001177017.1 (RefSeq);Oryzabase=21140;TENOR=Os12t0571400-00;KEGG=Os12t0571400-00
Chr12	irgsp1_rep	five_prime_UTR	23524209	23524261	.	+	.	Parent=Os12t0571400-00
Chr12	irgsp1_rep	CDS	23524262	23524633	.	+	0	Parent=Os12t0571400-00
Chr12	irgsp1_rep	three_prime_UTR	23524634	23524834	.	+	.	Parent=Os12t0571400-00
Chr12	irgsp1_rep	mRNA	23526524	23527156	.	+	.	ID=Os12t0571500-01;Name=Os12t0571500-01;Locus_id=Os12g0571500;CGSNL Gene Symbol=RALF40;CGSNL Gene Name=RAPID ALKALIZATION FACTOR 40;Oryzabase Gene Symbol Synonym(s)=OsRALF-40%2C OsRALF40%2C RALF-40;Oryzabase Gene Name Synonym(s)=Rapid alkalization factor 40;Note=Conserved hypothetical protein.;Transcript_evidence=AK119942 (DDBJ%2C Best hit);ORF_evidence=B9GDV7 (UniProt);NIAS_FLcDNA=002-184-B08;Oryzabase=21141;Expression=AK119942;TENOR=Os12t0571500-01;KEGG=Os12t0571500-01
Chr12	irgsp1_rep	five_prime_UTR	23526524	23526534	.	+	.	Parent=Os12t0571500-01
Chr12	irgsp1_rep	CDS	23526535	23526966	.	+	0	Parent=Os12t0571500-01
Chr12	irgsp1_rep	three_prime_UTR	23526967	23527156	.	+	.	Parent=Os12t0571500-01
Chr12	irgsp1_rep	mRNA	23530356	23531011	.	+	.	ID=Os12t0571600-01;Name=Os12t0571600-01;Locus_id=Os12g0571600;CGSNL Gene Symbol=RALF41;CGSNL Gene Name=RAPID ALKALIZATION FACTOR 41;Oryzabase Gene Symbol Synonym(s)=OsRALF-41%2C OsRALF41%2C RALF-41;Oryzabase Gene Name Synonym(s)=Rapid alkalization factor 41;Note=Hypothetical protein.;Transcript_evidence=AK242058 (DDBJ%2C Best hit);ORF_evidence=GeneMark;NIAS_FLcDNA=J075126F13;Oryzabase=21142;TENOR=Os12t0571600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	23530356	23530838	.	+	0	Parent=Os12t0571600-01
Chr12	irgsp1_rep	three_prime_UTR	23530839	23531011	.	+	.	Parent=Os12t0571600-01
Chr12	irgsp1_rep	mRNA	23532610	23533191	.	+	.	ID=Os12t0571700-01;Name=Os12t0571700-01;Locus_id=Os12g0571700;CGSNL Gene Symbol=RALF42;CGSNL Gene Name=RAPID ALKALIZATION FACTOR 42;Oryzabase Gene Symbol Synonym(s)=OsRALF-42%2C OsRALF42%2C RALF-42;Oryzabase Gene Name Synonym(s)=Rapid alkalization factor 42;Note=Conserved hypothetical protein.;Transcript_evidence=AK058855 (DDBJ%2C Best hit);ORF_evidence=A2ZLV8 (UniProt);NIAS_FLcDNA=001-005-B10;Oryzabase=21143;Expression=AK058855;TENOR=Os12t0571700-01;KEGG=Os12t0571700-01
Chr12	irgsp1_rep	five_prime_UTR	23532610	23532629	.	+	.	Parent=Os12t0571700-01
Chr12	irgsp1_rep	CDS	23532630	23533004	.	+	0	Parent=Os12t0571700-01
Chr12	irgsp1_rep	three_prime_UTR	23533005	23533191	.	+	.	Parent=Os12t0571700-01
Chr12	irgsp1_rep	mRNA	23545376	23554463	.	+	.	ID=Os12t0571900-01;Name=Os12t0571900-01;Locus_id=Os12g0571900;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK102914 (DDBJ%2C Best hit);ORF_evidence=XP_002892966.1 (RefSeq);GO=Biological Process: RNA processing (GO:0006396),Biological Process: mRNA processing (GO:0006397),Cellular Component: intracellular (GO:0005622),Cellular Component: nucleus (GO:0005634),Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=RNA-processing protein%2C HAT helix (IPR003107),Suppressor of forked (IPR008847),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J033113M06;Expression=AK102914;TENOR=Os12t0571900-01;KEGG=Os12t0571900-01
Chr12	irgsp1_rep	five_prime_UTR	23545376	23545563	.	+	.	Parent=Os12t0571900-01
Chr12	irgsp1_rep	five_prime_UTR	23545656	23545701	.	+	.	Parent=Os12t0571900-01
Chr12	irgsp1_rep	CDS	23545702	23545752	.	+	0	Parent=Os12t0571900-01
Chr12	irgsp1_rep	CDS	23545880	23545942	.	+	0	Parent=Os12t0571900-01
Chr12	irgsp1_rep	CDS	23546075	23546184	.	+	0	Parent=Os12t0571900-01
Chr12	irgsp1_rep	CDS	23546578	23546678	.	+	1	Parent=Os12t0571900-01
Chr12	irgsp1_rep	CDS	23547174	23547235	.	+	2	Parent=Os12t0571900-01
Chr12	irgsp1_rep	CDS	23547330	23547470	.	+	0	Parent=Os12t0571900-01
Chr12	irgsp1_rep	CDS	23547746	23547874	.	+	0	Parent=Os12t0571900-01
Chr12	irgsp1_rep	CDS	23548667	23548713	.	+	0	Parent=Os12t0571900-01
Chr12	irgsp1_rep	CDS	23549023	23549086	.	+	1	Parent=Os12t0571900-01
Chr12	irgsp1_rep	CDS	23549282	23549402	.	+	0	Parent=Os12t0571900-01
Chr12	irgsp1_rep	CDS	23549923	23549981	.	+	2	Parent=Os12t0571900-01
Chr12	irgsp1_rep	CDS	23550074	23550142	.	+	0	Parent=Os12t0571900-01
Chr12	irgsp1_rep	CDS	23550233	23550373	.	+	0	Parent=Os12t0571900-01
Chr12	irgsp1_rep	CDS	23550488	23550552	.	+	0	Parent=Os12t0571900-01
Chr12	irgsp1_rep	CDS	23550703	23550799	.	+	1	Parent=Os12t0571900-01
Chr12	irgsp1_rep	CDS	23551161	23551220	.	+	0	Parent=Os12t0571900-01
Chr12	irgsp1_rep	CDS	23551767	23551919	.	+	0	Parent=Os12t0571900-01
Chr12	irgsp1_rep	CDS	23552380	23552446	.	+	0	Parent=Os12t0571900-01
Chr12	irgsp1_rep	CDS	23552538	23552642	.	+	2	Parent=Os12t0571900-01
Chr12	irgsp1_rep	CDS	23553047	23553157	.	+	2	Parent=Os12t0571900-01
Chr12	irgsp1_rep	CDS	23553728	23553925	.	+	2	Parent=Os12t0571900-01
Chr12	irgsp1_rep	CDS	23554037	23554218	.	+	2	Parent=Os12t0571900-01
Chr12	irgsp1_rep	three_prime_UTR	23554219	23554463	.	+	.	Parent=Os12t0571900-01
Chr12	irgsp1_rep	mRNA	23554928	23560551	.	-	.	ID=Os12t0572000-01;Name=Os12t0572000-01;Locus_id=Os12g0572000;RAP-DB Gene Symbol Synonym(s)=OsMYB91%2C OsRS2;Oryzabase Gene Symbol Synonym(s)=OsMYB91%2C MYB91%2C OsRS2%2C RS2;Oryzabase Gene Name Synonym(s)=ROUGH SHEATH2%2C ROUGH SHEATH 2;Note=R2R3-type MYB transcription factor%2C Adaptive growth%2C Salt tolerance;Transcript_evidence=AB064519;ORF_evidence=Q94IB1,F4MGP4;GO=Biological Process: transcription%2C DNA-templated (GO:0006351),Biological Process: leaf formation (GO:0010338),Molecular Function: DNA binding (GO:0003677),Cellular Component: nucleus (GO:0005634);InterPro=Protein rough sheath 2/ASYMMETRIC LEAVES1 (IPR031055),Homeodomain-like (IPR009057),SANT/Myb domain (IPR001005),Myb domain (IPR017930);Manual Curation=June 5%2C 2015;Literature_PMID=26025528;Oryzabase=19892;TENOR=Os12t0572000-00
Chr12	irgsp1_rep	five_prime_UTR	23560202	23560551	.	-	.	Parent=Os12t0572000-01
Chr12	irgsp1_rep	five_prime_UTR	23556562	23556619	.	-	.	Parent=Os12t0572000-01
Chr12	irgsp1_rep	CDS	23555906	23556561	.	-	0	Parent=Os12t0572000-01
Chr12	irgsp1_rep	CDS	23555184	23555556	.	-	1	Parent=Os12t0572000-01
Chr12	irgsp1_rep	three_prime_UTR	23554928	23555183	.	-	.	Parent=Os12t0572000-01
Chr12	irgsp1_rep	mRNA	23584169	23585132	.	-	.	ID=Os12t0572300-01;Name=Os12t0572300-01;Locus_id=Os12g0572300;Note=Similar to Pre-mRNA splicing factor (Fragment).;Transcript_evidence=AK241625 (DDBJ%2C Best hit);ORF_evidence=Q7XXQ1 (UniProt);NIAS_FLcDNA=J065187E21;TENOR=Os12t0572300-01
Chr12	irgsp1_rep	five_prime_UTR	23585131	23585132	.	-	.	Parent=Os12t0572300-01
Chr12	irgsp1_rep	CDS	23584928	23585130	.	-	0	Parent=Os12t0572300-01
Chr12	irgsp1_rep	CDS	23584513	23584636	.	-	1	Parent=Os12t0572300-01
Chr12	irgsp1_rep	three_prime_UTR	23584169	23584512	.	-	.	Parent=Os12t0572300-01
Chr12	irgsp1_rep	mRNA	23589647	23593482	.	-	.	ID=Os12t0572400-01;Name=Os12t0572400-01;Locus_id=Os12g0572400;CGSNL Gene Symbol=SCL30B;CGSNL Gene Name=SC35-LIKE PROTEIN 30B;Oryzabase Gene Symbol Synonym(s)=OsSCL30%2C Os-SCL30%2C SCL30%2C OsSCL30b%2C Os-SCL30b;Oryzabase Gene Name Synonym(s)=SC35-like protein 30b%2C SCL subfamily protein 30b;Note=Similar to SC35-like splicing factor SCL30%2C 30 kD.;Transcript_evidence=AK065531 (DDBJ%2C Best hit);ORF_evidence=Q7XXQ1 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=J013034H02;Oryzabase=16052;Expression=AK065531;TENOR=Os12t0572400-01;KEGG=Os12t0572400-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	23593405	23593482	.	-	.	Parent=Os12t0572400-01
Chr12	irgsp1_rep	five_prime_UTR	23592528	23592535	.	-	.	Parent=Os12t0572400-01
Chr12	irgsp1_rep	CDS	23592382	23592527	.	-	0	Parent=Os12t0572400-01
Chr12	irgsp1_rep	CDS	23592166	23592243	.	-	1	Parent=Os12t0572400-01
Chr12	irgsp1_rep	CDS	23591104	23591268	.	-	1	Parent=Os12t0572400-01
Chr12	irgsp1_rep	CDS	23590959	23590999	.	-	1	Parent=Os12t0572400-01
Chr12	irgsp1_rep	CDS	23590691	23590745	.	-	2	Parent=Os12t0572400-01
Chr12	irgsp1_rep	CDS	23590434	23590616	.	-	1	Parent=Os12t0572400-01
Chr12	irgsp1_rep	CDS	23590019	23590142	.	-	1	Parent=Os12t0572400-01
Chr12	irgsp1_rep	three_prime_UTR	23589647	23590018	.	-	.	Parent=Os12t0572400-01
Chr12	irgsp1_rep	mRNA	23589675	23590638	.	-	.	ID=Os12t0572400-02;Name=Os12t0572400-02;Locus_id=Os12g0572400;CGSNL Gene Symbol=SCL30B;CGSNL Gene Name=SC35-LIKE PROTEIN 30B;Oryzabase Gene Symbol Synonym(s)=OsSCL30%2C Os-SCL30%2C SCL30%2C OsSCL30b%2C Os-SCL30b;Oryzabase Gene Name Synonym(s)=SC35-like protein 30b%2C SCL subfamily protein 30b;Note=Similar to Pre-mRNA splicing factor (Fragment).;Transcript_evidence=AK241625 (DDBJ%2C Best hit);ORF_evidence=Q7XXQ1 (UniProt);NIAS_FLcDNA=J065187E21;Oryzabase=16052;TENOR=Os12t0572400-02;KEGG=Os12t0572400-02
Chr12	irgsp1_rep	five_prime_UTR	23590637	23590638	.	-	.	Parent=Os12t0572400-02
Chr12	irgsp1_rep	CDS	23590434	23590636	.	-	0	Parent=Os12t0572400-02
Chr12	irgsp1_rep	CDS	23590019	23590142	.	-	1	Parent=Os12t0572400-02
Chr12	irgsp1_rep	three_prime_UTR	23589675	23590018	.	-	.	Parent=Os12t0572400-02
Chr12	irgsp1_rep	mRNA	23596228	23600217	.	+	.	ID=Os12t0572500-01;Name=Os12t0572500-01;Locus_id=Os12g0572500;Note=Region of unknown function XH domain containing protein.;Transcript_evidence=AK064511 (DDBJ%2C Best hit);ORF_evidence=Q2QNA8 (UniProt);InterPro=Uncharacterised domain XH (IPR005379);NIAS_FLcDNA=002-111-E08;Expression=AK064511;TENOR=Os12t0572500-01;KEGG=Os12t0572500-01
Chr12	irgsp1_rep	five_prime_UTR	23596228	23596278	.	+	.	Parent=Os12t0572500-01
Chr12	irgsp1_rep	five_prime_UTR	23596967	23597007	.	+	.	Parent=Os12t0572500-01
Chr12	irgsp1_rep	five_prime_UTR	23597294	23597298	.	+	.	Parent=Os12t0572500-01
Chr12	irgsp1_rep	CDS	23597299	23597461	.	+	0	Parent=Os12t0572500-01
Chr12	irgsp1_rep	CDS	23597562	23597758	.	+	2	Parent=Os12t0572500-01
Chr12	irgsp1_rep	CDS	23597966	23598100	.	+	0	Parent=Os12t0572500-01
Chr12	irgsp1_rep	CDS	23598266	23598439	.	+	0	Parent=Os12t0572500-01
Chr12	irgsp1_rep	CDS	23598557	23598769	.	+	0	Parent=Os12t0572500-01
Chr12	irgsp1_rep	CDS	23598869	23599113	.	+	0	Parent=Os12t0572500-01
Chr12	irgsp1_rep	CDS	23599914	23599920	.	+	1	Parent=Os12t0572500-01
Chr12	irgsp1_rep	three_prime_UTR	23599921	23600217	.	+	.	Parent=Os12t0572500-01
Chr12	irgsp1_rep	mRNA	23602746	23604587	.	-	.	ID=Os12t0572601-01;Name=Os12t0572601-01;Locus_id=Os12g0572601;Note=Hypothetical gene.;Transcript_evidence=AK287811 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065179L14;TENOR=Os12t0572601-01;KEGG=Os12t0572601-01
Chr12	irgsp1_rep	five_prime_UTR	23603223	23604587	.	-	.	Parent=Os12t0572601-01
Chr12	irgsp1_rep	CDS	23602755	23603222	.	-	0	Parent=Os12t0572601-01
Chr12	irgsp1_rep	three_prime_UTR	23602746	23602754	.	-	.	Parent=Os12t0572601-01
Chr12	irgsp1_rep	mRNA	23602840	23604420	.	+	.	ID=Os12t0572700-00;Name=Os12t0572700-00;Locus_id=Os12g0572700;Note=Exostosin-like domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001177020.1 (RefSeq);GO=Cellular Component: membrane (GO:0016020);InterPro=Exostosin-like (IPR004263);TENOR=Os12t0572700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	23602840	23604420	.	+	0	Parent=Os12t0572700-00
Chr12	irgsp1_rep	mRNA	23606947	23608522	.	+	.	ID=Os12t0572750-00;Name=Os12t0572750-00;Locus_id=Os12g0572750;Note=Hypothetical protein.;Transcript_evidence=AK358137 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0572750-00
Chr12	irgsp1_rep	five_prime_UTR	23606947	23607313	.	+	.	Parent=Os12t0572750-00
Chr12	irgsp1_rep	five_prime_UTR	23607489	23607912	.	+	.	Parent=Os12t0572750-00
Chr12	irgsp1_rep	CDS	23607913	23608269	.	+	0	Parent=Os12t0572750-00
Chr12	irgsp1_rep	three_prime_UTR	23608270	23608522	.	+	.	Parent=Os12t0572750-00
Chr12	irgsp1_rep	mRNA	23606086	23613017	.	-	.	ID=Os12t0572800-01;Name=Os12t0572800-01;Locus_id=Os12g0572800;RAP-DB Gene Symbol Synonym(s)=MEL2;RAP-DB Gene Name Synonym(s)=MEIOSIS ARRESTED AT LEPTOTENE 2%2C MEIOSIS ARRESTED AT LEPTOTENE2;CGSNL Gene Symbol=MEL2;CGSNL Gene Name=MEIOSIS ARRESTED AT LEPTOTENE 2;Oryzabase Gene Symbol Synonym(s)=OsMEL2;Oryzabase Gene Name Synonym(s)=MEIOSIS ARRESTED AT LEPTOTENE2;Note=RNA-Recognition-Motif (RRM) protein%2C Regulation of the premeiotic G1/S-phase transition of germ cells;Transcript_evidence=AB522964;ORF_evidence=F1LJ10;GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat-containing domain (IPR020683),Nucleotide-binding alpha-beta plait domain (IPR012677),RNA recognition motif domain (IPR000504),OST-HTH/LOTUS domain (IPR025605),Ankyrin repeat (IPR002110),Zinc finger%2C RING-type%2C conserved site (IPR017907);Manual Curation=October 7%2C 2015;Literature_PMID=21253568;Oryzabase=8896;TENOR=Os12t0572800-00
Chr12	irgsp1_rep	five_prime_UTR	23612984	23613017	.	-	.	Parent=Os12t0572800-01
Chr12	irgsp1_rep	CDS	23612975	23612983	.	-	0	Parent=Os12t0572800-01
Chr12	irgsp1_rep	CDS	23610943	23611418	.	-	0	Parent=Os12t0572800-01
Chr12	irgsp1_rep	CDS	23610802	23610865	.	-	1	Parent=Os12t0572800-01
Chr12	irgsp1_rep	CDS	23610351	23610704	.	-	0	Parent=Os12t0572800-01
Chr12	irgsp1_rep	CDS	23609942	23610066	.	-	0	Parent=Os12t0572800-01
Chr12	irgsp1_rep	CDS	23609730	23609838	.	-	1	Parent=Os12t0572800-01
Chr12	irgsp1_rep	CDS	23609502	23609647	.	-	0	Parent=Os12t0572800-01
Chr12	irgsp1_rep	CDS	23609341	23609414	.	-	1	Parent=Os12t0572800-01
Chr12	irgsp1_rep	CDS	23609051	23609153	.	-	2	Parent=Os12t0572800-01
Chr12	irgsp1_rep	CDS	23608814	23608934	.	-	1	Parent=Os12t0572800-01
Chr12	irgsp1_rep	CDS	23608662	23608734	.	-	0	Parent=Os12t0572800-01
Chr12	irgsp1_rep	CDS	23607118	23608565	.	-	2	Parent=Os12t0572800-01
Chr12	irgsp1_rep	CDS	23606848	23607039	.	-	0	Parent=Os12t0572800-01
Chr12	irgsp1_rep	CDS	23606453	23606641	.	-	0	Parent=Os12t0572800-01
Chr12	irgsp1_rep	three_prime_UTR	23606086	23606452	.	-	.	Parent=Os12t0572800-01
Chr12	irgsp1_rep	mRNA	23617099	23624066	.	+	.	ID=Os12t0573000-01;Name=Os12t0573000-01;Locus_id=Os12g0573000;Note=Domain of unknown function DUF304l domain containing protein.;Transcript_evidence=AK067552 (DDBJ%2C Best hit);ORF_evidence=B9GDW3 (UniProt);InterPro=Domain of unknown function DUF304l (IPR005182);NIAS_FLcDNA=J013109E02;Expression=AK067552;TENOR=Os12t0573000-01;KEGG=Os12t0573000-01
Chr12	irgsp1_rep	five_prime_UTR	23617099	23617857	.	+	.	Parent=Os12t0573000-01
Chr12	irgsp1_rep	CDS	23617858	23618163	.	+	0	Parent=Os12t0573000-01
Chr12	irgsp1_rep	CDS	23618255	23618348	.	+	0	Parent=Os12t0573000-01
Chr12	irgsp1_rep	CDS	23618642	23618751	.	+	2	Parent=Os12t0573000-01
Chr12	irgsp1_rep	CDS	23618828	23618854	.	+	0	Parent=Os12t0573000-01
Chr12	irgsp1_rep	three_prime_UTR	23618855	23619340	.	+	.	Parent=Os12t0573000-01
Chr12	irgsp1_rep	three_prime_UTR	23619835	23619898	.	+	.	Parent=Os12t0573000-01
Chr12	irgsp1_rep	three_prime_UTR	23621885	23622012	.	+	.	Parent=Os12t0573000-01
Chr12	irgsp1_rep	three_prime_UTR	23623491	23624066	.	+	.	Parent=Os12t0573000-01
Chr12	irgsp1_rep	mRNA	23617136	23620161	.	+	.	ID=Os12t0573000-02;Name=Os12t0573000-02;Locus_id=Os12g0573000;Note=Hypothetical conserved gene.;Transcript_evidence=AK069292 (DDBJ%2C Best hit);ORF_evidence=Q2QNA4 (UniProt);InterPro=Domain of unknown function DUF304l (IPR005182);NIAS_FLcDNA=J023015P05;Expression=AK069292;TENOR=Os12t0573000-02;KEGG=Os12t0573000-02
Chr12	irgsp1_rep	five_prime_UTR	23617136	23617857	.	+	.	Parent=Os12t0573000-02
Chr12	irgsp1_rep	CDS	23617858	23618163	.	+	0	Parent=Os12t0573000-02
Chr12	irgsp1_rep	CDS	23618255	23618348	.	+	0	Parent=Os12t0573000-02
Chr12	irgsp1_rep	CDS	23618642	23618760	.	+	2	Parent=Os12t0573000-02
Chr12	irgsp1_rep	CDS	23618833	23618940	.	+	0	Parent=Os12t0573000-02
Chr12	irgsp1_rep	CDS	23619281	23619340	.	+	0	Parent=Os12t0573000-02
Chr12	irgsp1_rep	CDS	23619835	23619885	.	+	0	Parent=Os12t0573000-02
Chr12	irgsp1_rep	three_prime_UTR	23619886	23620161	.	+	.	Parent=Os12t0573000-02
Chr12	irgsp1_rep	mRNA	23634672	23637678	.	+	.	ID=Os12t0573200-01;Name=Os12t0573200-01;Locus_id=Os12g0573200;CGSNL Gene Symbol=GRAS56;CGSNL Gene Name=GRAS PROTEIN 56;Oryzabase Gene Symbol Synonym(s)=OsGRAS-56%2C OsGRAS56%2C GRAS-56%2C DLN259%2C OsDLN259;Oryzabase Gene Name Synonym(s)=GRAS protein 56%2C DLN repressor 259%2C DLN motif protein 259;Note=GRAS transcription factor domain containing protein.;Transcript_evidence=AK121943 (DDBJ%2C Best hit),AK111522 (DDBJ%2C Best hit);ORF_evidence=Q53MB5 (UniProt);InterPro=Transcription factor GRAS (IPR005202);NIAS_FLcDNA=J033107F03,J013002M11;Oryzabase=22807;TENOR=Os12t0573200-01
Chr12	irgsp1_rep	five_prime_UTR	23634672	23634784	.	+	.	Parent=Os12t0573200-01
Chr12	irgsp1_rep	CDS	23634785	23637001	.	+	0	Parent=Os12t0573200-01
Chr12	irgsp1_rep	three_prime_UTR	23637002	23637127	.	+	.	Parent=Os12t0573200-01
Chr12	irgsp1_rep	three_prime_UTR	23637212	23637678	.	+	.	Parent=Os12t0573200-01
Chr12	irgsp1_rep	mRNA	23663142	23663722	.	+	.	ID=Os12t0573600-01;Name=Os12t0573600-01;Locus_id=Os12g0573600;Note=Similar to predicted protein.;Transcript_evidence=AK062306 (DDBJ%2C Best hit);ORF_evidence=A2ZLX1 (UniProt);InterPro=DVL (IPR012552);NIAS_FLcDNA=001-101-A12;Expression=AK062306;TENOR=Os12t0573600-01;KEGG=Os12t0573600-01
Chr12	irgsp1_rep	five_prime_UTR	23663142	23663249	.	+	.	Parent=Os12t0573600-01
Chr12	irgsp1_rep	CDS	23663250	23663438	.	+	0	Parent=Os12t0573600-01
Chr12	irgsp1_rep	three_prime_UTR	23663439	23663722	.	+	.	Parent=Os12t0573600-01
Chr12	irgsp1_rep	mRNA	23670086	23673047	.	+	.	ID=Os12t0573800-01;Name=Os12t0573800-01;Locus_id=Os12g0573800;Note=Conserved hypothetical protein.;Transcript_evidence=AK106961 (DDBJ%2C Best hit);ORF_evidence=Q2QN97 (UniProt);NIAS_FLcDNA=002-119-F03;TENOR=Os12t0573800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	23670086	23670384	.	+	.	Parent=Os12t0573800-01
Chr12	irgsp1_rep	five_prime_UTR	23670590	23670753	.	+	.	Parent=Os12t0573800-01
Chr12	irgsp1_rep	CDS	23671416	23671619	.	+	0	Parent=Os12t0573800-01
Chr12	irgsp1_rep	CDS	23671741	23671776	.	+	0	Parent=Os12t0573800-01
Chr12	irgsp1_rep	three_prime_UTR	23671777	23671970	.	+	.	Parent=Os12t0573800-01
Chr12	irgsp1_rep	three_prime_UTR	23672232	23673047	.	+	.	Parent=Os12t0573800-01
Chr12	irgsp1_rep	mRNA	23674545	23677352	.	+	.	ID=Os12t0573900-01;Name=Os12t0573900-01;Locus_id=Os12g0573900;Note=Conserved hypothetical protein.;Transcript_evidence=AK067684 (DDBJ%2C Best hit);ORF_evidence=B8BMM2 (UniProt);NIAS_FLcDNA=J013114D12;Expression=AK067684;TENOR=Os12t0573900-01;KEGG=Os12t0573900-01
Chr12	irgsp1_rep	five_prime_UTR	23674545	23674598	.	+	.	Parent=Os12t0573900-01
Chr12	irgsp1_rep	CDS	23674599	23674785	.	+	0	Parent=Os12t0573900-01
Chr12	irgsp1_rep	CDS	23675729	23675932	.	+	2	Parent=Os12t0573900-01
Chr12	irgsp1_rep	CDS	23676054	23676283	.	+	2	Parent=Os12t0573900-01
Chr12	irgsp1_rep	CDS	23676539	23676574	.	+	0	Parent=Os12t0573900-01
Chr12	irgsp1_rep	three_prime_UTR	23676575	23677352	.	+	.	Parent=Os12t0573900-01
Chr12	irgsp1_rep	mRNA	23687585	23691107	.	-	.	ID=Os12t0574000-01;Name=Os12t0574000-01;Locus_id=Os12g0574000;Oryzabase Gene Symbol Synonym(s)=OsATL10;Oryzabase Gene Name Synonym(s)=amino acid transporter-like 10;Note=Amino acid transporter%2C transmembrane domain containing protein.;Transcript_evidence=AK069006 (DDBJ%2C Best hit);ORF_evidence=B8BMM4 (UniProt);InterPro=Amino acid transporter%2C transmembrane (IPR013057);NIAS_FLcDNA=J023003I08;Oryzabase=18527;Expression=AK069006;TENOR=Os12t0574000-01;KEGG=Os12t0574000-01
Chr12	irgsp1_rep	five_prime_UTR	23691095	23691107	.	-	.	Parent=Os12t0574000-01
Chr12	irgsp1_rep	CDS	23690844	23691094	.	-	0	Parent=Os12t0574000-01
Chr12	irgsp1_rep	CDS	23690366	23690763	.	-	1	Parent=Os12t0574000-01
Chr12	irgsp1_rep	CDS	23689631	23689845	.	-	2	Parent=Os12t0574000-01
Chr12	irgsp1_rep	CDS	23689505	23689528	.	-	0	Parent=Os12t0574000-01
Chr12	irgsp1_rep	CDS	23689234	23689414	.	-	0	Parent=Os12t0574000-01
Chr12	irgsp1_rep	CDS	23688827	23689046	.	-	2	Parent=Os12t0574000-01
Chr12	irgsp1_rep	CDS	23688563	23688698	.	-	1	Parent=Os12t0574000-01
Chr12	irgsp1_rep	CDS	23688305	23688467	.	-	0	Parent=Os12t0574000-01
Chr12	irgsp1_rep	CDS	23688159	23688202	.	-	2	Parent=Os12t0574000-01
Chr12	irgsp1_rep	CDS	23687987	23688049	.	-	0	Parent=Os12t0574000-01
Chr12	irgsp1_rep	CDS	23687779	23687868	.	-	0	Parent=Os12t0574000-01
Chr12	irgsp1_rep	three_prime_UTR	23687585	23687778	.	-	.	Parent=Os12t0574000-01
Chr12	irgsp1_rep	mRNA	23703442	23712905	.	+	.	ID=Os12t0574400-01;Name=Os12t0574400-01;Locus_id=Os12g0574400;Note=Similar to BPM.;Transcript_evidence=AK070567 (DDBJ%2C Best hit);ORF_evidence=NP_180482.1 (RefSeq);GO=Molecular Function: RNA binding (GO:0003723),Molecular Function: binding (GO:0005488);InterPro=Pumilio RNA-binding repeat (IPR001313),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=J023055L05;Expression=AK070567;TENOR=Os12t0574400-01;KEGG=Os12t0574400-01
Chr12	irgsp1_rep	five_prime_UTR	23703442	23703481	.	+	.	Parent=Os12t0574400-01
Chr12	irgsp1_rep	CDS	23703482	23703619	.	+	0	Parent=Os12t0574400-01
Chr12	irgsp1_rep	CDS	23706936	23709598	.	+	0	Parent=Os12t0574400-01
Chr12	irgsp1_rep	CDS	23709727	23709868	.	+	1	Parent=Os12t0574400-01
Chr12	irgsp1_rep	CDS	23709962	23710069	.	+	0	Parent=Os12t0574400-01
Chr12	irgsp1_rep	CDS	23711143	23711355	.	+	0	Parent=Os12t0574400-01
Chr12	irgsp1_rep	CDS	23711448	23711555	.	+	0	Parent=Os12t0574400-01
Chr12	irgsp1_rep	CDS	23711743	23711952	.	+	0	Parent=Os12t0574400-01
Chr12	irgsp1_rep	CDS	23712246	23712420	.	+	0	Parent=Os12t0574400-01
Chr12	irgsp1_rep	CDS	23712562	23712629	.	+	2	Parent=Os12t0574400-01
Chr12	irgsp1_rep	three_prime_UTR	23712630	23712905	.	+	.	Parent=Os12t0574400-01
Chr12	irgsp1_rep	mRNA	23708301	23709505	.	-	.	ID=Os12t0574500-01;Name=Os12t0574500-01;Locus_id=Os12g0574500;Note=Hypothetical protein.;Transcript_evidence=AK060435 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-011-B10;Expression=AK060435;TENOR=Os12t0574500-01;KEGG=Os12t0574500-01
Chr12	irgsp1_rep	five_prime_UTR	23709276	23709505	.	-	.	Parent=Os12t0574500-01
Chr12	irgsp1_rep	CDS	23709036	23709275	.	-	0	Parent=Os12t0574500-01
Chr12	irgsp1_rep	three_prime_UTR	23708301	23709035	.	-	.	Parent=Os12t0574500-01
Chr12	irgsp1_rep	mRNA	23717571	23719674	.	-	.	ID=Os12t0574700-00;Name=Os12t0574700-00;Locus_id=Os12g0574700;Note=Similar to lectin-like receptor kinase 7.;Transcript_evidence=EU956727 (DDBJ);ORF_evidence=Q2QN91 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: binding (GO:0005488),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Legume lectin%2C beta chain (IPR001220),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Legume lectin%2C beta chain%2C Mn/Ca-binding site (IPR019825);TENOR=Os12t0574700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	23719632	23719674	.	-	.	Parent=Os12t0574700-00
Chr12	irgsp1_rep	CDS	23717571	23719631	.	-	0	Parent=Os12t0574700-00
Chr12	irgsp1_rep	mRNA	23725985	23729782	.	-	.	ID=Os12t0574800-02;Name=Os12t0574800-02;Locus_id=Os12g0574800;Note=Conserved hypothetical protein.;Transcript_evidence=AK102465 (DDBJ%2C Best hit),AK073004 (DDBJ%2C Best hit);ORF_evidence=A2ZLY4 (UniProt);NIAS_FLcDNA=J033094E07,J023149C18;TENOR=Os12t0574800-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	23729340	23729782	.	-	.	Parent=Os12t0574800-02
Chr12	irgsp1_rep	CDS	23728239	23729339	.	-	0	Parent=Os12t0574800-02
Chr12	irgsp1_rep	three_prime_UTR	23728150	23728238	.	-	.	Parent=Os12t0574800-02
Chr12	irgsp1_rep	three_prime_UTR	23725985	23726569	.	-	.	Parent=Os12t0574800-02
Chr12	irgsp1_rep	mRNA	23727933	23729741	.	-	.	ID=Os12t0574800-03;Name=Os12t0574800-03;Locus_id=Os12g0574800;Note=Bromodomain transcription factor domain containing protein.;Transcript_evidence=AK121687 (DDBJ%2C Best hit);ORF_evidence=A2ZLY4 (UniProt);InterPro=Bromodomain transcription factor (IPR006565),Transcription factor TFIID%2C subunit 8%2C C-terminal (IPR019473);NIAS_FLcDNA=J033070O18;TENOR=Os12t0574800-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	23729340	23729741	.	-	.	Parent=Os12t0574800-03
Chr12	irgsp1_rep	CDS	23728239	23729339	.	-	0	Parent=Os12t0574800-03
Chr12	irgsp1_rep	three_prime_UTR	23727933	23728238	.	-	.	Parent=Os12t0574800-03
Chr12	irgsp1_rep	mRNA	23729946	23734874	.	-	.	ID=Os12t0574900-01;Name=Os12t0574900-01;Locus_id=Os12g0574900;Note=Similar to Asparagine synthase family protein.;Transcript_evidence=AK102088 (DDBJ%2C Best hit);ORF_evidence=B6SVT7 (UniProt);NIAS_FLcDNA=J033082N19;TENOR=Os12t0574900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	23734864	23734874	.	-	.	Parent=Os12t0574900-01
Chr12	irgsp1_rep	CDS	23734726	23734863	.	-	0	Parent=Os12t0574900-01
Chr12	irgsp1_rep	CDS	23734524	23734629	.	-	0	Parent=Os12t0574900-01
Chr12	irgsp1_rep	CDS	23734283	23734432	.	-	2	Parent=Os12t0574900-01
Chr12	irgsp1_rep	CDS	23733817	23734020	.	-	2	Parent=Os12t0574900-01
Chr12	irgsp1_rep	CDS	23733663	23733736	.	-	2	Parent=Os12t0574900-01
Chr12	irgsp1_rep	three_prime_UTR	23733604	23733662	.	-	.	Parent=Os12t0574900-01
Chr12	irgsp1_rep	three_prime_UTR	23733097	23733420	.	-	.	Parent=Os12t0574900-01
Chr12	irgsp1_rep	three_prime_UTR	23732860	23732927	.	-	.	Parent=Os12t0574900-01
Chr12	irgsp1_rep	three_prime_UTR	23732596	23732710	.	-	.	Parent=Os12t0574900-01
Chr12	irgsp1_rep	three_prime_UTR	23732291	23732396	.	-	.	Parent=Os12t0574900-01
Chr12	irgsp1_rep	three_prime_UTR	23731701	23731794	.	-	.	Parent=Os12t0574900-01
Chr12	irgsp1_rep	three_prime_UTR	23731422	23731612	.	-	.	Parent=Os12t0574900-01
Chr12	irgsp1_rep	three_prime_UTR	23731198	23731297	.	-	.	Parent=Os12t0574900-01
Chr12	irgsp1_rep	three_prime_UTR	23730997	23731113	.	-	.	Parent=Os12t0574900-01
Chr12	irgsp1_rep	three_prime_UTR	23730513	23730569	.	-	.	Parent=Os12t0574900-01
Chr12	irgsp1_rep	three_prime_UTR	23729946	23730407	.	-	.	Parent=Os12t0574900-01
Chr12	irgsp1_rep	mRNA	23735825	23736773	.	-	.	ID=Os12t0575000-01;Name=Os12t0575000-01;Locus_id=Os12g0575000;Note=Protein of unknown function DUF1118 family protein.;Transcript_evidence=AK059885 (DDBJ%2C Best hit),AK104945 (DDBJ%2C Best hit);ORF_evidence=B8BMN2 (UniProt);InterPro=Protein of unknown function DUF1118 (IPR009500);NIAS_FLcDNA=006-208-A11,001-107-F10;Expression=AK059885;TENOR=Os12t0575000-01;KEGG=Os12t0575000-01
Chr12	irgsp1_rep	five_prime_UTR	23736726	23736773	.	-	.	Parent=Os12t0575000-01
Chr12	irgsp1_rep	CDS	23736591	23736725	.	-	0	Parent=Os12t0575000-01
Chr12	irgsp1_rep	CDS	23736055	23736492	.	-	0	Parent=Os12t0575000-01
Chr12	irgsp1_rep	three_prime_UTR	23735825	23736054	.	-	.	Parent=Os12t0575000-01
Chr12	irgsp1_rep	mRNA	23737238	23739634	.	+	.	ID=Os12t0575200-01;Name=Os12t0575200-01;Locus_id=Os12g0575200;Note=Similar to cDNA clone:001-021-F10%2C full insert sequence.;Transcript_evidence=AK059058 (DDBJ%2C Best hit);ORF_evidence=NP_196421.1 (RefSeq);NIAS_FLcDNA=001-021-F10;Expression=AK059058;TENOR=Os12t0575200-01;KEGG=Os12t0575200-01
Chr12	irgsp1_rep	five_prime_UTR	23737238	23737321	.	+	.	Parent=Os12t0575200-01
Chr12	irgsp1_rep	CDS	23737322	23737408	.	+	0	Parent=Os12t0575200-01
Chr12	irgsp1_rep	CDS	23739338	23739415	.	+	0	Parent=Os12t0575200-01
Chr12	irgsp1_rep	three_prime_UTR	23739416	23739634	.	+	.	Parent=Os12t0575200-01
Chr12	irgsp1_rep	mRNA	23737281	23739742	.	+	.	ID=Os12t0575200-02;Name=Os12t0575200-02;Locus_id=Os12g0575200;Note=Similar to cDNA clone:001-021-F10%2C full insert sequence.;Transcript_evidence=AK288160 (DDBJ%2C Best hit);ORF_evidence=NP_196421.1 (RefSeq);NIAS_FLcDNA=J090001J06;TENOR=Os12t0575200-02;KEGG=Os12t0575200-02
Chr12	irgsp1_rep	five_prime_UTR	23737281	23737321	.	+	.	Parent=Os12t0575200-02
Chr12	irgsp1_rep	CDS	23737322	23737408	.	+	0	Parent=Os12t0575200-02
Chr12	irgsp1_rep	CDS	23739338	23739415	.	+	0	Parent=Os12t0575200-02
Chr12	irgsp1_rep	three_prime_UTR	23739416	23739742	.	+	.	Parent=Os12t0575200-02
Chr12	irgsp1_rep	mRNA	23739977	23740564	.	-	.	ID=Os12t0575300-01;Name=Os12t0575300-01;Locus_id=Os12g0575300;Note=Conserved hypothetical protein.;Transcript_evidence=AK120701 (DDBJ%2C Best hit);ORF_evidence=NP_001067107.1 (RefSeq);NIAS_FLcDNA=J013170N06;Expression=AK120701;TENOR=Os12t0575300-01;KEGG=Os12t0575300-01
Chr12	irgsp1_rep	five_prime_UTR	23740492	23740564	.	-	.	Parent=Os12t0575300-01
Chr12	irgsp1_rep	CDS	23740183	23740491	.	-	0	Parent=Os12t0575300-01
Chr12	irgsp1_rep	three_prime_UTR	23739977	23740182	.	-	.	Parent=Os12t0575300-01
Chr12	irgsp1_rep	mRNA	23750068	23750655	.	-	.	ID=Os12t0575400-01;Name=Os12t0575400-01;Locus_id=Os12g0575400;Note=Conserved hypothetical protein.;Transcript_evidence=AK120701 (DDBJ%2C Best hit);ORF_evidence=NP_001067107.1 (RefSeq);NIAS_FLcDNA=J013170N06;Expression=AK120701;TENOR=Os12t0575400-01;KEGG=Os12t0575400-01
Chr12	irgsp1_rep	five_prime_UTR	23750583	23750655	.	-	.	Parent=Os12t0575400-01
Chr12	irgsp1_rep	CDS	23750274	23750582	.	-	0	Parent=Os12t0575400-01
Chr12	irgsp1_rep	three_prime_UTR	23750068	23750273	.	-	.	Parent=Os12t0575400-01
Chr12	irgsp1_rep	mRNA	23782933	23783505	.	-	.	ID=Os12t0576100-00;Name=Os12t0576100-00;Locus_id=Os12g0576100;Note=Conserved hypothetical protein.;Transcript_evidence=CU406037 (DDBJ%2C Best hit);ORF_evidence=NP_001067107.1 (RefSeq);TENOR=Os12t0576100-00;KEGG=Os12t0576100-00
Chr12	irgsp1_rep	five_prime_UTR	23783459	23783505	.	-	.	Parent=Os12t0576100-00
Chr12	irgsp1_rep	CDS	23783150	23783458	.	-	0	Parent=Os12t0576100-00
Chr12	irgsp1_rep	three_prime_UTR	23782933	23783149	.	-	.	Parent=Os12t0576100-00
Chr12	irgsp1_rep	mRNA	23794368	23797952	.	-	.	ID=Os12t0576300-01;Name=Os12t0576300-01;Locus_id=Os12g0576300;Note=Conserved hypothetical protein.;Transcript_evidence=AK068258 (DDBJ%2C Best hit);ORF_evidence=Q2QN76 (UniProt);NIAS_FLcDNA=J013147P19;Expression=AK068258;TENOR=Os12t0576300-01;KEGG=Os12t0576300-01
Chr12	irgsp1_rep	five_prime_UTR	23797724	23797952	.	-	.	Parent=Os12t0576300-01
Chr12	irgsp1_rep	five_prime_UTR	23797401	23797538	.	-	.	Parent=Os12t0576300-01
Chr12	irgsp1_rep	CDS	23796599	23797400	.	-	0	Parent=Os12t0576300-01
Chr12	irgsp1_rep	CDS	23795521	23795727	.	-	2	Parent=Os12t0576300-01
Chr12	irgsp1_rep	CDS	23795304	23795440	.	-	2	Parent=Os12t0576300-01
Chr12	irgsp1_rep	CDS	23794457	23795209	.	-	0	Parent=Os12t0576300-01
Chr12	irgsp1_rep	three_prime_UTR	23794368	23794456	.	-	.	Parent=Os12t0576300-01
Chr12	irgsp1_rep	mRNA	23794337	23796879	.	-	.	ID=Os12t0576300-02;Name=Os12t0576300-02;Locus_id=Os12g0576300;Note=Conserved hypothetical protein.;Transcript_evidence=AK058735 (DDBJ%2C Best hit);ORF_evidence=Q2QN77 (UniProt);NIAS_FLcDNA=001-019-G02;TENOR=Os12t0576300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	23796879	23796879	.	-	.	Parent=Os12t0576300-02
Chr12	irgsp1_rep	CDS	23796599	23796878	.	-	0	Parent=Os12t0576300-02
Chr12	irgsp1_rep	CDS	23795521	23795727	.	-	2	Parent=Os12t0576300-02
Chr12	irgsp1_rep	CDS	23795304	23795440	.	-	2	Parent=Os12t0576300-02
Chr12	irgsp1_rep	CDS	23794457	23795218	.	-	0	Parent=Os12t0576300-02
Chr12	irgsp1_rep	three_prime_UTR	23794337	23794456	.	-	.	Parent=Os12t0576300-02
Chr12	irgsp1_rep	mRNA	23805152	23808859	.	-	.	ID=Os12t0576600-01;Name=Os12t0576600-01;Locus_id=Os12g0576600;CGSNL Gene Symbol=PAP1D;CGSNL Gene Name=PURPLE ACID PHOSPHATASE 1D;Oryzabase Gene Symbol Synonym(s)=OsPAP1d%2C NPP5%2C OsNPP5;Oryzabase Gene Name Synonym(s)=purple acid phosphatase 1d%2C Nucleotide pyrophosphatase/phosphodiesterase 5;Note=Metallophosphoesterase domain containing protein.;Transcript_evidence=AK121432 (DDBJ%2C Best hit);ORF_evidence=NP_001152048.1 (RefSeq);GO=Molecular Function: acid phosphatase activity (GO:0003993),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: metal ion binding (GO:0046872);InterPro=Metallophosphoesterase domain (IPR004843),Purple acid phosphatase-like%2C N-terminal (IPR008963),Purple acid phosphatase%2C N-terminal (IPR015914);NIAS_FLcDNA=J023138J08;Oryzabase=11375;Expression=AK121432;TENOR=Os12t0576600-01;KEGG=Os12t0576600-01
Chr12	irgsp1_rep	five_prime_UTR	23808763	23808859	.	-	.	Parent=Os12t0576600-01
Chr12	irgsp1_rep	five_prime_UTR	23808674	23808681	.	-	.	Parent=Os12t0576600-01
Chr12	irgsp1_rep	CDS	23808509	23808673	.	-	0	Parent=Os12t0576600-01
Chr12	irgsp1_rep	CDS	23808310	23808401	.	-	0	Parent=Os12t0576600-01
Chr12	irgsp1_rep	CDS	23808142	23808208	.	-	1	Parent=Os12t0576600-01
Chr12	irgsp1_rep	CDS	23807929	23808051	.	-	0	Parent=Os12t0576600-01
Chr12	irgsp1_rep	CDS	23807691	23807783	.	-	0	Parent=Os12t0576600-01
Chr12	irgsp1_rep	CDS	23807406	23807535	.	-	0	Parent=Os12t0576600-01
Chr12	irgsp1_rep	CDS	23807111	23807192	.	-	2	Parent=Os12t0576600-01
Chr12	irgsp1_rep	CDS	23806889	23807021	.	-	1	Parent=Os12t0576600-01
Chr12	irgsp1_rep	CDS	23806575	23806780	.	-	0	Parent=Os12t0576600-01
Chr12	irgsp1_rep	CDS	23806376	23806501	.	-	1	Parent=Os12t0576600-01
Chr12	irgsp1_rep	CDS	23805999	23806308	.	-	1	Parent=Os12t0576600-01
Chr12	irgsp1_rep	CDS	23805450	23805755	.	-	0	Parent=Os12t0576600-01
Chr12	irgsp1_rep	three_prime_UTR	23805152	23805449	.	-	.	Parent=Os12t0576600-01
Chr12	irgsp1_rep	mRNA	23805228	23808756	.	-	.	ID=Os12t0576600-02;Name=Os12t0576600-02;Locus_id=Os12g0576600;CGSNL Gene Symbol=PAP1D;CGSNL Gene Name=PURPLE ACID PHOSPHATASE 1D;Oryzabase Gene Symbol Synonym(s)=OsPAP1d%2C NPP5%2C OsNPP5;Oryzabase Gene Name Synonym(s)=purple acid phosphatase 1d%2C Nucleotide pyrophosphatase/phosphodiesterase 5;Note=Metallophosphoesterase domain containing protein.;Transcript_evidence=AK065128 (DDBJ%2C Best hit);ORF_evidence=NP_001152048.1 (RefSeq);GO=Molecular Function: acid phosphatase activity (GO:0003993),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: metal ion binding (GO:0046872);InterPro=Metallophosphoesterase domain (IPR004843),Purple acid phosphatase-like%2C N-terminal (IPR008963),Purple acid phosphatase%2C N-terminal (IPR015914);NIAS_FLcDNA=J013001P11;Oryzabase=11375;Expression=AK065128;TENOR=Os12t0576600-02;KEGG=Os12t0576600-02
Chr12	irgsp1_rep	five_prime_UTR	23808674	23808756	.	-	.	Parent=Os12t0576600-02
Chr12	irgsp1_rep	CDS	23808509	23808673	.	-	0	Parent=Os12t0576600-02
Chr12	irgsp1_rep	CDS	23808310	23808401	.	-	0	Parent=Os12t0576600-02
Chr12	irgsp1_rep	CDS	23808142	23808208	.	-	1	Parent=Os12t0576600-02
Chr12	irgsp1_rep	CDS	23807929	23808051	.	-	0	Parent=Os12t0576600-02
Chr12	irgsp1_rep	CDS	23807691	23807783	.	-	0	Parent=Os12t0576600-02
Chr12	irgsp1_rep	CDS	23807406	23807535	.	-	0	Parent=Os12t0576600-02
Chr12	irgsp1_rep	CDS	23807111	23807192	.	-	2	Parent=Os12t0576600-02
Chr12	irgsp1_rep	CDS	23806889	23807021	.	-	1	Parent=Os12t0576600-02
Chr12	irgsp1_rep	CDS	23806575	23806780	.	-	0	Parent=Os12t0576600-02
Chr12	irgsp1_rep	CDS	23806376	23806501	.	-	1	Parent=Os12t0576600-02
Chr12	irgsp1_rep	CDS	23805999	23806308	.	-	1	Parent=Os12t0576600-02
Chr12	irgsp1_rep	CDS	23805450	23805755	.	-	0	Parent=Os12t0576600-02
Chr12	irgsp1_rep	three_prime_UTR	23805228	23805449	.	-	.	Parent=Os12t0576600-02
Chr12	irgsp1_rep	mRNA	23810618	23814363	.	-	.	ID=Os12t0576700-01;Name=Os12t0576700-01;Locus_id=Os12g0576700;CGSNL Gene Symbol=PAP1C;CGSNL Gene Name=PURPLE ACID PHOSPHATASE 1C;Oryzabase Gene Symbol Synonym(s)=OsPAP1c%2C NPP4%2C OsNPP4;Oryzabase Gene Name Synonym(s)=purple acid phosphatase 1c%2C Nucleotide pyrophosphatase/phosphodiesterase 4;Note=Similar to Diphosphonucleotide phosphatase 1 precursor.;Transcript_evidence=AK073512 (DDBJ%2C Best hit);ORF_evidence=NP_001152048.1 (RefSeq);GO=Molecular Function: acid phosphatase activity (GO:0003993),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: metal ion binding (GO:0046872);InterPro=Metallophosphoesterase domain (IPR004843),Purple acid phosphatase-like%2C N-terminal (IPR008963),Purple acid phosphatase%2C N-terminal (IPR015914);NIAS_FLcDNA=J033043B10;Oryzabase=11374;Expression=AK073512;TENOR=Os12t0576700-01;KEGG=Os12t0576700-01
Chr12	irgsp1_rep	five_prime_UTR	23814332	23814363	.	-	.	Parent=Os12t0576700-01
Chr12	irgsp1_rep	five_prime_UTR	23814202	23814218	.	-	.	Parent=Os12t0576700-01
Chr12	irgsp1_rep	CDS	23814040	23814201	.	-	0	Parent=Os12t0576700-01
Chr12	irgsp1_rep	CDS	23813846	23813937	.	-	0	Parent=Os12t0576700-01
Chr12	irgsp1_rep	CDS	23813691	23813757	.	-	1	Parent=Os12t0576700-01
Chr12	irgsp1_rep	CDS	23813447	23813569	.	-	0	Parent=Os12t0576700-01
Chr12	irgsp1_rep	CDS	23813229	23813321	.	-	0	Parent=Os12t0576700-01
Chr12	irgsp1_rep	CDS	23812941	23813070	.	-	0	Parent=Os12t0576700-01
Chr12	irgsp1_rep	CDS	23812418	23812499	.	-	2	Parent=Os12t0576700-01
Chr12	irgsp1_rep	CDS	23812205	23812337	.	-	1	Parent=Os12t0576700-01
Chr12	irgsp1_rep	CDS	23811895	23812100	.	-	0	Parent=Os12t0576700-01
Chr12	irgsp1_rep	CDS	23811695	23811820	.	-	1	Parent=Os12t0576700-01
Chr12	irgsp1_rep	CDS	23811297	23811606	.	-	1	Parent=Os12t0576700-01
Chr12	irgsp1_rep	CDS	23810751	23811062	.	-	0	Parent=Os12t0576700-01
Chr12	irgsp1_rep	three_prime_UTR	23810618	23810750	.	-	.	Parent=Os12t0576700-01
Chr12	irgsp1_rep	mRNA	23819160	23823117	.	+	.	ID=Os12t0576732-01;Name=Os12t0576732-01;Locus_id=Os12g0576732;Note=Hypothetical gene.;Transcript_evidence=AK318533 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065181C03;TENOR=Os12t0576732-01;KEGG=Os12t0576732-01
Chr12	irgsp1_rep	five_prime_UTR	23819160	23819601	.	+	.	Parent=Os12t0576732-01
Chr12	irgsp1_rep	five_prime_UTR	23819789	23820101	.	+	.	Parent=Os12t0576732-01
Chr12	irgsp1_rep	five_prime_UTR	23820186	23820311	.	+	.	Parent=Os12t0576732-01
Chr12	irgsp1_rep	five_prime_UTR	23820411	23820616	.	+	.	Parent=Os12t0576732-01
Chr12	irgsp1_rep	five_prime_UTR	23820684	23820816	.	+	.	Parent=Os12t0576732-01
Chr12	irgsp1_rep	five_prime_UTR	23820980	23821061	.	+	.	Parent=Os12t0576732-01
Chr12	irgsp1_rep	five_prime_UTR	23821158	23821287	.	+	.	Parent=Os12t0576732-01
Chr12	irgsp1_rep	five_prime_UTR	23821407	23821499	.	+	.	Parent=Os12t0576732-01
Chr12	irgsp1_rep	five_prime_UTR	23821584	23821706	.	+	.	Parent=Os12t0576732-01
Chr12	irgsp1_rep	five_prime_UTR	23821796	23821862	.	+	.	Parent=Os12t0576732-01
Chr12	irgsp1_rep	five_prime_UTR	23821964	23822055	.	+	.	Parent=Os12t0576732-01
Chr12	irgsp1_rep	five_prime_UTR	23822159	23822282	.	+	.	Parent=Os12t0576732-01
Chr12	irgsp1_rep	CDS	23822283	23822350	.	+	0	Parent=Os12t0576732-01
Chr12	irgsp1_rep	CDS	23822925	23823081	.	+	1	Parent=Os12t0576732-01
Chr12	irgsp1_rep	three_prime_UTR	23823082	23823117	.	+	.	Parent=Os12t0576732-01
Chr12	irgsp1_rep	mRNA	23819165	23822961	.	-	.	ID=Os12t0576750-01;Name=Os12t0576750-01;Locus_id=Os12g0576750;RAP-DB Gene Symbol Synonym(s)=PAP1B%2C OsPAP1b%2C NPP2%2C OsNPP2;RAP-DB Gene Name Synonym(s)=PURPLE ACID PHOSPHATASE 1B%2C purple acid phosphatase 1b%2C Nucleotide pyrophosphatase/phosphodiesterase 2;CGSNL Gene Symbol=PAP1B;CGSNL Gene Name=PURPLE ACID PHOSPHATASE 1B;Oryzabase Gene Symbol Synonym(s)=OsPAP1b%2C NPP2%2C OsNPP2;Oryzabase Gene Name Synonym(s)=purple acid phosphatase 1b%2C Nucleotide pyrophosphatase/phosphodiesterase 2;Note=Nucleotide pyrophosphatase%2C Hydrolysis of UDP%2C ADP and adenosine 5'-phosphosulfate;Transcript_evidence=AB196673;ORF_evidence=I4DHV7;GO=Molecular Function: acid phosphatase activity (GO:0003993),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: metal ion binding (GO:0046872);InterPro=Purple acid phosphatase-like%2C N-terminal (IPR008963),Purple acid phosphatase%2C N-terminal (IPR015914),Metallo-dependent phosphatase-like (IPR029052),Calcineurin-like phosphoesterase domain%2C apaH type (IPR004843),Iron/zinc purple acid phosphatase-like C-terminal domain (IPR025733);Manual Curation=November 21%2C 2014;Literature_PMID=24092883;Oryzabase=11373;TENOR=Os12t0576750-00
Chr12	irgsp1_rep	five_prime_UTR	23822925	23822961	.	-	.	Parent=Os12t0576750-01
Chr12	irgsp1_rep	five_prime_UTR	23822342	23822350	.	-	.	Parent=Os12t0576750-01
Chr12	irgsp1_rep	CDS	23822159	23822341	.	-	0	Parent=Os12t0576750-01
Chr12	irgsp1_rep	CDS	23821964	23822055	.	-	0	Parent=Os12t0576750-01
Chr12	irgsp1_rep	CDS	23821796	23821862	.	-	1	Parent=Os12t0576750-01
Chr12	irgsp1_rep	CDS	23821584	23821706	.	-	0	Parent=Os12t0576750-01
Chr12	irgsp1_rep	CDS	23821407	23821499	.	-	0	Parent=Os12t0576750-01
Chr12	irgsp1_rep	CDS	23821158	23821287	.	-	0	Parent=Os12t0576750-01
Chr12	irgsp1_rep	CDS	23820980	23821061	.	-	2	Parent=Os12t0576750-01
Chr12	irgsp1_rep	CDS	23820684	23820816	.	-	1	Parent=Os12t0576750-01
Chr12	irgsp1_rep	CDS	23820411	23820616	.	-	0	Parent=Os12t0576750-01
Chr12	irgsp1_rep	CDS	23820186	23820311	.	-	1	Parent=Os12t0576750-01
Chr12	irgsp1_rep	CDS	23819789	23820101	.	-	1	Parent=Os12t0576750-01
Chr12	irgsp1_rep	CDS	23819296	23819601	.	-	0	Parent=Os12t0576750-01
Chr12	irgsp1_rep	three_prime_UTR	23819165	23819295	.	-	.	Parent=Os12t0576750-01
Chr12	irgsp1_rep	mRNA	23823838	23829525	.	-	.	ID=Os12t0576900-01;Name=Os12t0576900-01;Locus_id=Os12g0576900;CGSNL Gene Symbol=DGK4;CGSNL Gene Name=DIACYLGLYCEROL KINASE 4;Oryzabase Gene Symbol Synonym(s)=OsDGK4;Oryzabase Gene Name Synonym(s)=Diacylglycerol kinase 4;Note=Similar to Diacylglycerol kinase 1 (EC 2.7.1.107) (Diglyceride kinase 1) (DGK 1) (DAG kinase 1).;Transcript_evidence=AK100331 (DDBJ%2C Best hit);ORF_evidence=A8QM12 (UniProt);GO=Biological Process: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway (GO:0007205),Biological Process: intracellular signal transduction (GO:0035556),Molecular Function: diacylglycerol kinase activity (GO:0004143);InterPro=Diacylglycerol kinase%2C accessory domain (IPR000756),Diacylglycerol kinase%2C catalytic domain (IPR001206),Protein kinase C-like%2C phorbol ester/diacylglycerol binding (IPR002219),Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J023080K21;Oryzabase=23313;Expression=AK100331;TENOR=Os12t0576900-01;KEGG=Os12t0576900-01 (EC:2.7.1.107)
Chr12	irgsp1_rep	five_prime_UTR	23829307	23829525	.	-	.	Parent=Os12t0576900-01
Chr12	irgsp1_rep	five_prime_UTR	23828245	23828245	.	-	.	Parent=Os12t0576900-01
Chr12	irgsp1_rep	CDS	23827111	23828244	.	-	0	Parent=Os12t0576900-01
Chr12	irgsp1_rep	CDS	23826405	23826771	.	-	0	Parent=Os12t0576900-01
Chr12	irgsp1_rep	CDS	23826246	23826322	.	-	2	Parent=Os12t0576900-01
Chr12	irgsp1_rep	CDS	23825199	23825318	.	-	0	Parent=Os12t0576900-01
Chr12	irgsp1_rep	CDS	23824603	23824734	.	-	0	Parent=Os12t0576900-01
Chr12	irgsp1_rep	CDS	23824373	23824510	.	-	0	Parent=Os12t0576900-01
Chr12	irgsp1_rep	CDS	23824149	23824298	.	-	0	Parent=Os12t0576900-01
Chr12	irgsp1_rep	three_prime_UTR	23823838	23824148	.	-	.	Parent=Os12t0576900-01
Chr12	irgsp1_rep	mRNA	23831716	23834166	.	+	.	ID=Os12t0577000-00;Name=Os12t0577000-00;Locus_id=Os12g0577000;Note=Similar to Targeting protein for Xklp2 containing protein%2C expressed.;Transcript_evidence=FP091774 (DDBJ);ORF_evidence=Q2QN69 (UniProt);InterPro=Xklp2 targeting protein (IPR009675);TENOR=Os12t0577000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	23831716	23832389	.	+	0	Parent=Os12t0577000-00
Chr12	irgsp1_rep	CDS	23832495	23832543	.	+	1	Parent=Os12t0577000-00
Chr12	irgsp1_rep	CDS	23832649	23832729	.	+	0	Parent=Os12t0577000-00
Chr12	irgsp1_rep	CDS	23832972	23833091	.	+	0	Parent=Os12t0577000-00
Chr12	irgsp1_rep	CDS	23833330	23833428	.	+	0	Parent=Os12t0577000-00
Chr12	irgsp1_rep	CDS	23833508	23833567	.	+	0	Parent=Os12t0577000-00
Chr12	irgsp1_rep	CDS	23833689	23833783	.	+	0	Parent=Os12t0577000-00
Chr12	irgsp1_rep	CDS	23833882	23833957	.	+	1	Parent=Os12t0577000-00
Chr12	irgsp1_rep	three_prime_UTR	23833958	23834166	.	+	.	Parent=Os12t0577000-00
Chr12	irgsp1_rep	mRNA	23842441	23845218	.	+	.	ID=Os12t0577100-01;Name=Os12t0577100-01;Locus_id=Os12g0577100;Note=Nucleotide-binding%2C alpha-beta plait domain containing protein.;Transcript_evidence=AK059444 (DDBJ%2C Best hit);ORF_evidence=B9GDX5 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=RNA recognition motif domain (IPR000504),Nucleotide-binding%2C alpha-beta plait (IPR012677);NIAS_FLcDNA=001-028-A03;Expression=AK059444;TENOR=Os12t0577100-01;KEGG=Os12t0577100-01
Chr12	irgsp1_rep	five_prime_UTR	23842441	23842559	.	+	.	Parent=Os12t0577100-01
Chr12	irgsp1_rep	CDS	23842560	23842568	.	+	0	Parent=Os12t0577100-01
Chr12	irgsp1_rep	CDS	23842661	23842741	.	+	0	Parent=Os12t0577100-01
Chr12	irgsp1_rep	CDS	23842841	23842909	.	+	0	Parent=Os12t0577100-01
Chr12	irgsp1_rep	CDS	23843004	23843079	.	+	0	Parent=Os12t0577100-01
Chr12	irgsp1_rep	CDS	23843180	23843346	.	+	2	Parent=Os12t0577100-01
Chr12	irgsp1_rep	CDS	23843753	23843857	.	+	0	Parent=Os12t0577100-01
Chr12	irgsp1_rep	CDS	23843942	23844010	.	+	0	Parent=Os12t0577100-01
Chr12	irgsp1_rep	CDS	23844127	23844189	.	+	0	Parent=Os12t0577100-01
Chr12	irgsp1_rep	CDS	23844276	23844394	.	+	0	Parent=Os12t0577100-01
Chr12	irgsp1_rep	CDS	23844497	23844983	.	+	1	Parent=Os12t0577100-01
Chr12	irgsp1_rep	three_prime_UTR	23844984	23845218	.	+	.	Parent=Os12t0577100-01
Chr12	irgsp1_rep	mRNA	23850905	23852346	.	+	.	ID=Os12t0577200-01;Name=Os12t0577200-01;Locus_id=Os12g0577200;Note=Conserved hypothetical protein.;Transcript_evidence=AK106267 (DDBJ%2C Best hit);ORF_evidence=A2ZLZ6 (UniProt);NIAS_FLcDNA=002-100-G03;Expression=AK106267;TENOR=Os12t0577200-01;KEGG=Os12t0577200-01
Chr12	irgsp1_rep	five_prime_UTR	23850905	23851087	.	+	.	Parent=Os12t0577200-01
Chr12	irgsp1_rep	CDS	23851088	23852143	.	+	0	Parent=Os12t0577200-01
Chr12	irgsp1_rep	three_prime_UTR	23852144	23852346	.	+	.	Parent=Os12t0577200-01
Chr12	irgsp1_rep	mRNA	23879858	23884977	.	+	.	ID=Os12t0577600-01;Name=Os12t0577600-01;Locus_id=Os12g0577600;Note=Protein of unknown function DUF1336 domain containing protein.;Transcript_evidence=AK065535 (DDBJ%2C Best hit);ORF_evidence=B8BMP2 (UniProt);InterPro=Domain of unknown function DUF1336 (IPR009769);NIAS_FLcDNA=J013025J24;Expression=AK065535;TENOR=Os12t0577600-01;KEGG=Os12t0577600-01
Chr12	irgsp1_rep	five_prime_UTR	23879858	23879934	.	+	.	Parent=Os12t0577600-01
Chr12	irgsp1_rep	five_prime_UTR	23881030	23881675	.	+	.	Parent=Os12t0577600-01
Chr12	irgsp1_rep	CDS	23881676	23881916	.	+	0	Parent=Os12t0577600-01
Chr12	irgsp1_rep	CDS	23882003	23882086	.	+	2	Parent=Os12t0577600-01
Chr12	irgsp1_rep	CDS	23882170	23882685	.	+	2	Parent=Os12t0577600-01
Chr12	irgsp1_rep	CDS	23882799	23882931	.	+	2	Parent=Os12t0577600-01
Chr12	irgsp1_rep	CDS	23883013	23883175	.	+	1	Parent=Os12t0577600-01
Chr12	irgsp1_rep	CDS	23883259	23883387	.	+	0	Parent=Os12t0577600-01
Chr12	irgsp1_rep	CDS	23883475	23883669	.	+	0	Parent=Os12t0577600-01
Chr12	irgsp1_rep	CDS	23883754	23883876	.	+	0	Parent=Os12t0577600-01
Chr12	irgsp1_rep	CDS	23884544	23884657	.	+	0	Parent=Os12t0577600-01
Chr12	irgsp1_rep	three_prime_UTR	23884658	23884977	.	+	.	Parent=Os12t0577600-01
Chr12	irgsp1_rep	mRNA	23885845	23888835	.	-	.	ID=Os12t0577700-00;Name=Os12t0577700-00;Locus_id=Os12g0577700;Oryzabase Gene Symbol Synonym(s)=Orysa%3BCKL1%2C OsSTA287;Oryzabase Gene Name Synonym(s)=CDK-LIKE 1%2C cyclin-dependent kinase-like 1;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=BT066917 (DDBJ);ORF_evidence=Q2QN62 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=13300;TENOR=Os12t0577700-00;KEGG=Os12t0577700-00 (EC:2.7.11.22)
Chr12	irgsp1_rep	five_prime_UTR	23888826	23888835	.	-	.	Parent=Os12t0577700-00
Chr12	irgsp1_rep	CDS	23888430	23888825	.	-	0	Parent=Os12t0577700-00
Chr12	irgsp1_rep	CDS	23888051	23888338	.	-	0	Parent=Os12t0577700-00
Chr12	irgsp1_rep	CDS	23887418	23887972	.	-	0	Parent=Os12t0577700-00
Chr12	irgsp1_rep	CDS	23886400	23887340	.	-	0	Parent=Os12t0577700-00
Chr12	irgsp1_rep	CDS	23885858	23885900	.	-	1	Parent=Os12t0577700-00
Chr12	irgsp1_rep	three_prime_UTR	23885845	23885857	.	-	.	Parent=Os12t0577700-00
Chr12	irgsp1_rep	mRNA	23886397	23887139	.	+	.	ID=Os12t0577733-00;Name=Os12t0577733-00;Locus_id=Os12g0577733;Note=Hypothetical gene.;Transcript_evidence=BT085542 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0577733-00;KEGG=Os12t0577733-00
Chr12	irgsp1_rep	five_prime_UTR	23886397	23886596	.	+	.	Parent=Os12t0577733-00
Chr12	irgsp1_rep	CDS	23886597	23887139	.	+	0	Parent=Os12t0577733-00
Chr12	irgsp1_rep	mRNA	23887598	23888545	.	+	.	ID=Os12t0577766-00;Name=Os12t0577766-00;Locus_id=Os12g0577766;Note=Hypothetical protein.;Transcript_evidence=tplb0040h06 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0577766-00
Chr12	irgsp1_rep	five_prime_UTR	23887598	23887924	.	+	.	Parent=Os12t0577766-00
Chr12	irgsp1_rep	CDS	23887925	23887991	.	+	0	Parent=Os12t0577766-00
Chr12	irgsp1_rep	CDS	23888064	23888324	.	+	2	Parent=Os12t0577766-00
Chr12	irgsp1_rep	CDS	23888419	23888545	.	+	2	Parent=Os12t0577766-00
Chr12	irgsp1_rep	mRNA	23892674	23898184	.	-	.	ID=Os12t0577800-01;Name=Os12t0577800-01;Locus_id=Os12g0577800;Note=Protein of unknown function DUF863%2C plant family protein.;Transcript_evidence=AK068994 (DDBJ%2C Best hit);ORF_evidence=A2ZM02 (UniProt);InterPro=Protein of unknown function DUF863%2C plant (IPR008581);NIAS_FLcDNA=J023002B13;Expression=AK068994;TENOR=Os12t0577800-01;KEGG=Os12t0577800-01
Chr12	irgsp1_rep	five_prime_UTR	23897872	23898184	.	-	.	Parent=Os12t0577800-01
Chr12	irgsp1_rep	five_prime_UTR	23897099	23897263	.	-	.	Parent=Os12t0577800-01
Chr12	irgsp1_rep	five_prime_UTR	23896609	23896739	.	-	.	Parent=Os12t0577800-01
Chr12	irgsp1_rep	five_prime_UTR	23895646	23895647	.	-	.	Parent=Os12t0577800-01
Chr12	irgsp1_rep	CDS	23895421	23895645	.	-	0	Parent=Os12t0577800-01
Chr12	irgsp1_rep	CDS	23894557	23895292	.	-	0	Parent=Os12t0577800-01
Chr12	irgsp1_rep	CDS	23893064	23894463	.	-	2	Parent=Os12t0577800-01
Chr12	irgsp1_rep	three_prime_UTR	23892674	23893063	.	-	.	Parent=Os12t0577800-01
Chr12	irgsp1_rep	mRNA	23892748	23894257	.	-	.	ID=Os12t0577800-02;Name=Os12t0577800-02;Locus_id=Os12g0577800;Note=Hypothetical conserved gene.;Transcript_evidence=AK105024 (DDBJ%2C Best hit);ORF_evidence=A3CIS6 (UniProt);InterPro=Protein of unknown function DUF863%2C plant (IPR008581);NIAS_FLcDNA=001-011-A11;Expression=AK105024;TENOR=Os12t0577800-02;KEGG=Os12t0577800-02
Chr12	irgsp1_rep	CDS	23893064	23894257	.	-	0	Parent=Os12t0577800-02
Chr12	irgsp1_rep	three_prime_UTR	23892748	23893063	.	-	.	Parent=Os12t0577800-02
Chr12	irgsp1_rep	mRNA	23912869	23914600	.	+	.	ID=Os12t0577900-00;Name=Os12t0577900-00;Locus_id=Os12g0577900;Note=Hypothetical protein.;Transcript_evidence=tplb0021n11 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0577900-00
Chr12	irgsp1_rep	five_prime_UTR	23912869	23913570	.	+	.	Parent=Os12t0577900-00
Chr12	irgsp1_rep	CDS	23913571	23913580	.	+	0	Parent=Os12t0577900-00
Chr12	irgsp1_rep	CDS	23913787	23914481	.	+	2	Parent=Os12t0577900-00
Chr12	irgsp1_rep	three_prime_UTR	23914482	23914600	.	+	.	Parent=Os12t0577900-00
Chr12	irgsp1_rep	mRNA	23912222	23914774	.	-	.	ID=Os12t0578000-01;Name=Os12t0578000-01;Locus_id=Os12g0578000;Note=Conserved hypothetical protein.;Transcript_evidence=AK106299 (DDBJ%2C Best hit);ORF_evidence=A2ZM04 (UniProt);NIAS_FLcDNA=002-101-C03;TENOR=Os12t0578000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	23914774	23914774	.	-	.	Parent=Os12t0578000-01
Chr12	irgsp1_rep	CDS	23914015	23914773	.	-	0	Parent=Os12t0578000-01
Chr12	irgsp1_rep	three_prime_UTR	23912222	23914014	.	-	.	Parent=Os12t0578000-01
Chr12	irgsp1_rep	mRNA	23918907	23923365	.	+	.	ID=Os12t0578200-01;Name=Os12t0578200-01;Locus_id=Os12g0578200;Note=Similar to Chorismate mutase%2C chloroplast precursor (EC 5.4.99.5) (CM-1).;Transcript_evidence=AK105512 (DDBJ%2C Best hit);ORF_evidence=B5AAU1 (UniProt);GO=Biological Process: aromatic amino acid family biosynthetic process (GO:0009073),Biological Process: chorismate metabolic process (GO:0046417),Molecular Function: chorismate mutase activity (GO:0004106);InterPro=Chorismate mutase%2C AroQ class%2C eukaryotic type (IPR008238),Chorismate mutase%2C type II (IPR020822);NIAS_FLcDNA=001-127-E07;Expression=AK105512;TENOR=Os12t0578200-01;KEGG=Os12t0578200-01 (EC:5.4.99.5)
Chr12	irgsp1_rep	five_prime_UTR	23918907	23918968	.	+	.	Parent=Os12t0578200-01
Chr12	irgsp1_rep	CDS	23918969	23919177	.	+	0	Parent=Os12t0578200-01
Chr12	irgsp1_rep	CDS	23921221	23921458	.	+	1	Parent=Os12t0578200-01
Chr12	irgsp1_rep	CDS	23921527	23921613	.	+	0	Parent=Os12t0578200-01
Chr12	irgsp1_rep	CDS	23922094	23922237	.	+	0	Parent=Os12t0578200-01
Chr12	irgsp1_rep	CDS	23922543	23922633	.	+	0	Parent=Os12t0578200-01
Chr12	irgsp1_rep	CDS	23922850	23923079	.	+	2	Parent=Os12t0578200-01
Chr12	irgsp1_rep	three_prime_UTR	23923080	23923365	.	+	.	Parent=Os12t0578200-01
Chr12	irgsp1_rep	mRNA	23925696	23928693	.	+	.	ID=Os12t0578300-01;Name=Os12t0578300-01;Locus_id=Os12g0578300;Note=Calmodulin-binding%2C plant family protein.;Transcript_evidence=AK100503 (DDBJ%2C Best hit);ORF_evidence=B8BMP5 (UniProt);InterPro=Calmodulin-binding protein%2C plant (IPR012417);NIAS_FLcDNA=J023099K02;Expression=AK100503;TENOR=Os12t0578300-01;KEGG=Os12t0578300-01
Chr12	irgsp1_rep	five_prime_UTR	23925696	23925912	.	+	.	Parent=Os12t0578300-01
Chr12	irgsp1_rep	five_prime_UTR	23926444	23926458	.	+	.	Parent=Os12t0578300-01
Chr12	irgsp1_rep	CDS	23926459	23927926	.	+	0	Parent=Os12t0578300-01
Chr12	irgsp1_rep	CDS	23928171	23928559	.	+	2	Parent=Os12t0578300-01
Chr12	irgsp1_rep	three_prime_UTR	23928560	23928693	.	+	.	Parent=Os12t0578300-01
Chr12	irgsp1_rep	mRNA	23931409	23935656	.	+	.	ID=Os12t0578400-01;Name=Os12t0578400-01;Locus_id=Os12g0578400;Note=Glycoside hydrolase family 79%2C N-terminal protein.;Transcript_evidence=AK060767 (DDBJ%2C Best hit),AK098886 (DDBJ%2C Best hit);ORF_evidence=C5IFK6 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: hydrolase activity%2C acting on glycosyl bonds (GO:0016798);InterPro=Glycoside hydrolase%2C family 79 (IPR005199),Glycoside hydrolase%2C superfamily (IPR017853);NIAS_FLcDNA=001-033-A11,J013001J13;TENOR=Os12t0578400-01
Chr12	irgsp1_rep	five_prime_UTR	23931409	23931650	.	+	.	Parent=Os12t0578400-01
Chr12	irgsp1_rep	five_prime_UTR	23932524	23932534	.	+	.	Parent=Os12t0578400-01
Chr12	irgsp1_rep	CDS	23932535	23932744	.	+	0	Parent=Os12t0578400-01
Chr12	irgsp1_rep	CDS	23932841	23932877	.	+	0	Parent=Os12t0578400-01
Chr12	irgsp1_rep	CDS	23933291	23933474	.	+	2	Parent=Os12t0578400-01
Chr12	irgsp1_rep	CDS	23933637	23933785	.	+	1	Parent=Os12t0578400-01
Chr12	irgsp1_rep	CDS	23933889	23934119	.	+	2	Parent=Os12t0578400-01
Chr12	irgsp1_rep	CDS	23934224	23934413	.	+	2	Parent=Os12t0578400-01
Chr12	irgsp1_rep	CDS	23934498	23934620	.	+	1	Parent=Os12t0578400-01
Chr12	irgsp1_rep	CDS	23934705	23934807	.	+	1	Parent=Os12t0578400-01
Chr12	irgsp1_rep	CDS	23935032	23935424	.	+	0	Parent=Os12t0578400-01
Chr12	irgsp1_rep	three_prime_UTR	23935425	23935656	.	+	.	Parent=Os12t0578400-01
Chr12	irgsp1_rep	mRNA	23936130	23941400	.	-	.	ID=Os12t0578500-01;Name=Os12t0578500-01;Locus_id=Os12g0578500;CGSNL Gene Symbol=GAUT20;CGSNL Gene Name=GALACTURONOSYLTRANSFERASE 20;Oryzabase Gene Symbol Synonym(s)=OsGAUT20;Oryzabase Gene Name Synonym(s)=galacturonosyltransferase 20;Note=Glycosyl transferase%2C family 8 protein.;Transcript_evidence=AK065485 (DDBJ%2C Best hit);ORF_evidence=XP_002443426.1 (RefSeq);GO=Molecular Function: transferase activity%2C transferring glycosyl groups (GO:0016757);InterPro=Glycosyl transferase%2C family 8 (IPR002495);NIAS_FLcDNA=J013003G01;Oryzabase=23262;Expression=AK065485;TENOR=Os12t0578500-01;KEGG=Os12t0578500-01
Chr12	irgsp1_rep	five_prime_UTR	23940936	23941400	.	-	.	Parent=Os12t0578500-01
Chr12	irgsp1_rep	CDS	23940668	23940935	.	-	0	Parent=Os12t0578500-01
Chr12	irgsp1_rep	CDS	23939226	23939284	.	-	2	Parent=Os12t0578500-01
Chr12	irgsp1_rep	CDS	23938980	23939135	.	-	0	Parent=Os12t0578500-01
Chr12	irgsp1_rep	CDS	23937864	23938451	.	-	0	Parent=Os12t0578500-01
Chr12	irgsp1_rep	CDS	23937188	23937490	.	-	0	Parent=Os12t0578500-01
Chr12	irgsp1_rep	CDS	23936517	23936807	.	-	0	Parent=Os12t0578500-01
Chr12	irgsp1_rep	three_prime_UTR	23936130	23936516	.	-	.	Parent=Os12t0578500-01
Chr12	irgsp1_rep	mRNA	23944117	23946753	.	-	.	ID=Os12t0578600-01;Name=Os12t0578600-01;Locus_id=Os12g0578600;CGSNL Gene Symbol=DLN260;CGSNL Gene Name=DLN REPRESSOR 260;Oryzabase Gene Symbol Synonym(s)=OsDLN260;Oryzabase Gene Name Synonym(s)=DLN repressor 260%2C DLN motif protein 260;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=AK070634 (DDBJ%2C Best hit);ORF_evidence=A2ZM11 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087);NIAS_FLcDNA=J023055E06;Oryzabase=23240;Expression=AK070634;TENOR=Os12t0578600-01;KEGG=Os12t0578600-01
Chr12	irgsp1_rep	five_prime_UTR	23946211	23946753	.	-	.	Parent=Os12t0578600-01
Chr12	irgsp1_rep	five_prime_UTR	23945626	23945630	.	-	.	Parent=Os12t0578600-01
Chr12	irgsp1_rep	CDS	23944543	23945625	.	-	0	Parent=Os12t0578600-01
Chr12	irgsp1_rep	three_prime_UTR	23944117	23944542	.	-	.	Parent=Os12t0578600-01
Chr12	irgsp1_rep	mRNA	23948201	23951881	.	-	.	ID=Os12t0578700-01;Name=Os12t0578700-01;Locus_id=Os12g0578700;CGSNL Gene Symbol=DLN261;CGSNL Gene Name=DLN REPRESSOR 261;Oryzabase Gene Symbol Synonym(s)=OsDLN261%2C OsDLN261a%2C OsDLN261b%2C DLN261a%2C DLN261b;Oryzabase Gene Name Synonym(s)=DLN repressor 261%2C DLN motif protein 261;Note=Conserved hypothetical protein.;Transcript_evidence=AK109747 (DDBJ%2C Best hit);ORF_evidence=A3CIT3 (UniProt);NIAS_FLcDNA=002-146-F04;Oryzabase=23241;Expression=AK109747;TENOR=Os12t0578700-01;KEGG=Os12t0578700-01
Chr12	irgsp1_rep	five_prime_UTR	23951565	23951881	.	-	.	Parent=Os12t0578700-01
Chr12	irgsp1_rep	five_prime_UTR	23950871	23950872	.	-	.	Parent=Os12t0578700-01
Chr12	irgsp1_rep	CDS	23950696	23950870	.	-	0	Parent=Os12t0578700-01
Chr12	irgsp1_rep	CDS	23949728	23949904	.	-	2	Parent=Os12t0578700-01
Chr12	irgsp1_rep	CDS	23948396	23949201	.	-	2	Parent=Os12t0578700-01
Chr12	irgsp1_rep	three_prime_UTR	23948201	23948395	.	-	.	Parent=Os12t0578700-01
Chr12	irgsp1_rep	mRNA	23952363	23956048	.	-	.	ID=Os12t0578800-01;Name=Os12t0578800-01;Locus_id=Os12g0578800;Note=Zinc finger%2C C2H2 domain containing protein.;Transcript_evidence=AK102141 (DDBJ%2C Best hit);ORF_evidence=B9GDY3 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J033085L23;TENOR=Os12t0578800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	23955795	23956048	.	-	.	Parent=Os12t0578800-01
Chr12	irgsp1_rep	five_prime_UTR	23955510	23955537	.	-	.	Parent=Os12t0578800-01
Chr12	irgsp1_rep	CDS	23955425	23955509	.	-	0	Parent=Os12t0578800-01
Chr12	irgsp1_rep	CDS	23954587	23954688	.	-	2	Parent=Os12t0578800-01
Chr12	irgsp1_rep	CDS	23952767	23953860	.	-	2	Parent=Os12t0578800-01
Chr12	irgsp1_rep	three_prime_UTR	23952363	23952766	.	-	.	Parent=Os12t0578800-01
Chr12	irgsp1_rep	mRNA	23960548	23968065	.	+	.	ID=Os12t0579000-01;Name=Os12t0579000-01;Locus_id=Os12g0579000;Note=Leo1-like protein family protein.;Transcript_evidence=AK106536 (DDBJ%2C Best hit),AK073095 (DDBJ%2C Best hit);ORF_evidence=XP_002318586.1 (RefSeq);InterPro=Leo1-like protein (IPR007149);NIAS_FLcDNA=002-108-C04,J033005D09;TENOR=Os12t0579000-01
Chr12	irgsp1_rep	five_prime_UTR	23960548	23960727	.	+	.	Parent=Os12t0579000-01
Chr12	irgsp1_rep	CDS	23960728	23960958	.	+	0	Parent=Os12t0579000-01
Chr12	irgsp1_rep	CDS	23961361	23961716	.	+	0	Parent=Os12t0579000-01
Chr12	irgsp1_rep	CDS	23961923	23962037	.	+	1	Parent=Os12t0579000-01
Chr12	irgsp1_rep	CDS	23962525	23962707	.	+	0	Parent=Os12t0579000-01
Chr12	irgsp1_rep	CDS	23963176	23963352	.	+	0	Parent=Os12t0579000-01
Chr12	irgsp1_rep	CDS	23963719	23963850	.	+	0	Parent=Os12t0579000-01
Chr12	irgsp1_rep	CDS	23963961	23964140	.	+	0	Parent=Os12t0579000-01
Chr12	irgsp1_rep	CDS	23965490	23965621	.	+	0	Parent=Os12t0579000-01
Chr12	irgsp1_rep	CDS	23966751	23966864	.	+	0	Parent=Os12t0579000-01
Chr12	irgsp1_rep	CDS	23966953	23967180	.	+	0	Parent=Os12t0579000-01
Chr12	irgsp1_rep	CDS	23967717	23967860	.	+	0	Parent=Os12t0579000-01
Chr12	irgsp1_rep	three_prime_UTR	23967861	23968065	.	+	.	Parent=Os12t0579000-01
Chr12	irgsp1_rep	mRNA	23983517	23992683	.	-	.	ID=Os12t0579450-00;Name=Os12t0579450-00;Locus_id=Os12g0579450;Note=Hypothetical gene.;Transcript_evidence=CT835605 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os12t0579450-00;KEGG=Os12t0579450-00
Chr12	irgsp1_rep	five_prime_UTR	23992532	23992683	.	-	.	Parent=Os12t0579450-00
Chr12	irgsp1_rep	CDS	23992378	23992531	.	-	0	Parent=Os12t0579450-00
Chr12	irgsp1_rep	CDS	23983957	23984153	.	-	2	Parent=Os12t0579450-00
Chr12	irgsp1_rep	three_prime_UTR	23983517	23983956	.	-	.	Parent=Os12t0579450-00
Chr12	irgsp1_rep	mRNA	24031221	24035687	.	+	.	ID=Os12t0580300-01;Name=Os12t0580300-01;Locus_id=Os12g0580300;Note=Similar to TATA-binding protein TBP2.;Transcript_evidence=AK102871 (DDBJ%2C Best hit);ORF_evidence=Q8W0W4 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: transcription initiation from RNA polymerase II promoter (GO:0006367),Molecular Function: DNA binding (GO:0003677),Molecular Function: binding (GO:0005488);InterPro=TATA-box binding protein (IPR000814),Transcription factor TFIID%2C C-terminal/DNA glycosylase%2C N-terminal (IPR012294),Beta2-adaptin/TATA-box binding%2C C-terminal (IPR012295);NIAS_FLcDNA=J033112A19;Expression=AK102871;TENOR=Os12t0580300-01;KEGG=Os12t0580300-01
Chr12	irgsp1_rep	five_prime_UTR	24031221	24031374	.	+	.	Parent=Os12t0580300-01
Chr12	irgsp1_rep	CDS	24031375	24031475	.	+	0	Parent=Os12t0580300-01
Chr12	irgsp1_rep	CDS	24032511	24032598	.	+	1	Parent=Os12t0580300-01
Chr12	irgsp1_rep	CDS	24033184	24033255	.	+	0	Parent=Os12t0580300-01
Chr12	irgsp1_rep	CDS	24034195	24034245	.	+	0	Parent=Os12t0580300-01
Chr12	irgsp1_rep	CDS	24034314	24034358	.	+	0	Parent=Os12t0580300-01
Chr12	irgsp1_rep	CDS	24034460	24034552	.	+	0	Parent=Os12t0580300-01
Chr12	irgsp1_rep	CDS	24034639	24034740	.	+	0	Parent=Os12t0580300-01
Chr12	irgsp1_rep	CDS	24034816	24034889	.	+	0	Parent=Os12t0580300-01
Chr12	irgsp1_rep	CDS	24035335	24035335	.	+	1	Parent=Os12t0580300-01
Chr12	irgsp1_rep	three_prime_UTR	24035336	24035687	.	+	.	Parent=Os12t0580300-01
Chr12	irgsp1_rep	mRNA	24037631	24039592	.	+	.	ID=Os12t0580400-01;Name=Os12t0580400-01;Locus_id=Os12g0580400;CGSNL Gene Symbol=PUT2;CGSNL Gene Name=POLYAMINE UPTAKE TRANSPORTER 2;Oryzabase Gene Symbol Synonym(s)=OsPUT2%2C OsLAT7;Oryzabase Gene Name Synonym(s)=PA uptake transporter 2%2C polyamine uptake transporter 2;Note=Similar to neutral amino acid transport protein.;Transcript_evidence=AK099986 (DDBJ%2C Best hit);ORF_evidence=XP_002313902.1 (RefSeq);GO=Biological Process: amino acid transmembrane transport (GO:0003333),Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: amino acid transmembrane transporter activity (GO:0015171);InterPro=Amino acid/polyamine transporter I (IPR002293),Amino acid permease domain (IPR004841);NIAS_FLcDNA=J013130A09;Oryzabase=10267;TENOR=Os12t0580400-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	24037631	24037790	.	+	.	Parent=Os12t0580400-01
Chr12	irgsp1_rep	CDS	24037791	24039281	.	+	0	Parent=Os12t0580400-01
Chr12	irgsp1_rep	three_prime_UTR	24039282	24039592	.	+	.	Parent=Os12t0580400-01
Chr12	irgsp1_rep	mRNA	24045274	24047098	.	+	.	ID=Os12t0580500-01;Name=Os12t0580500-01;Locus_id=Os12g0580500;Note=Transcriptional coactivator SAGA-type complex%2C Ada1/Tada1 domain containing protein.;Transcript_evidence=AK106472 (DDBJ%2C Best hit);ORF_evidence=B8BMQ4 (UniProt);GO=Cellular Component: SAGA-type complex (GO:0070461);InterPro=Transcriptional coactivator SAGA-type complex%2C Ada1/Tada1 (IPR024738);NIAS_FLcDNA=002-104-A11;TENOR=Os12t0580500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	24045274	24045705	.	+	.	Parent=Os12t0580500-01
Chr12	irgsp1_rep	CDS	24045706	24046824	.	+	0	Parent=Os12t0580500-01
Chr12	irgsp1_rep	three_prime_UTR	24046825	24047098	.	+	.	Parent=Os12t0580500-01
Chr12	irgsp1_rep	mRNA	24053229	24054780	.	+	.	ID=Os12t0580600-01;Name=Os12t0580600-01;Locus_id=Os12g0580600;Note=Conserved hypothetical protein.;Transcript_evidence=AK108584 (DDBJ%2C Best hit);ORF_evidence=Q2QN38 (UniProt);NIAS_FLcDNA=002-146-A09;TENOR=Os12t0580600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	24053229	24053386	.	+	.	Parent=Os12t0580600-01
Chr12	irgsp1_rep	five_prime_UTR	24053649	24053747	.	+	.	Parent=Os12t0580600-01
Chr12	irgsp1_rep	CDS	24053748	24053837	.	+	0	Parent=Os12t0580600-01
Chr12	irgsp1_rep	CDS	24053963	24054472	.	+	0	Parent=Os12t0580600-01
Chr12	irgsp1_rep	three_prime_UTR	24054473	24054780	.	+	.	Parent=Os12t0580600-01
Chr12	irgsp1_rep	mRNA	24060616	24064631	.	+	.	ID=Os12t0580700-01;Name=Os12t0580700-01;Locus_id=Os12g0580700;Oryzabase Gene Symbol Synonym(s)=OsRFPH2-18;Oryzabase Gene Name Synonym(s)=RING finger protein OsRFPH2-18%2C RING-H2 protein 18;Note=Similar to RING-H2 finger protein ATL2N.;Transcript_evidence=AK072892 (DDBJ%2C Best hit);ORF_evidence=F2DNG2 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J023149P20;Oryzabase=11779;Expression=AK072892;TENOR=Os12t0580700-01;KEGG=Os12t0580700-01
Chr12	irgsp1_rep	five_prime_UTR	24060616	24060746	.	+	.	Parent=Os12t0580700-01
Chr12	irgsp1_rep	CDS	24060747	24060890	.	+	0	Parent=Os12t0580700-01
Chr12	irgsp1_rep	CDS	24063570	24063775	.	+	0	Parent=Os12t0580700-01
Chr12	irgsp1_rep	CDS	24063866	24064292	.	+	1	Parent=Os12t0580700-01
Chr12	irgsp1_rep	three_prime_UTR	24064293	24064631	.	+	.	Parent=Os12t0580700-01
Chr12	irgsp1_rep	mRNA	24066298	24069594	.	+	.	ID=Os12t0580900-01;Name=Os12t0580900-01;Locus_id=Os12g0580900;Oryzabase Gene Symbol Synonym(s)=OsPP2C78%2C PP2C78%2C OsPP131;Oryzabase Gene Name Synonym(s)=protein phosphatase 2C78%2C protein phosphatase 2C 78%2C protein phosphatase 131;Note=Similar to Protein phosphatase 2C-like protein.;Transcript_evidence=AK071206 (DDBJ%2C Best hit);ORF_evidence=E4MYB6 (UniProt);GO=Biological Process: protein dephosphorylation (GO:0006470),Cellular Component: protein serine/threonine phosphatase complex (GO:0008287),Molecular Function: catalytic activity (GO:0003824),Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);InterPro=Protein phosphatase 2C%2C manganese/magnesium aspartate binding site (IPR000222),Protein phosphatase 2C-like (IPR001932),Protein phosphatase 2C (IPR015655);NIAS_FLcDNA=J023088E06;Oryzabase=17949;Expression=AK071206;TENOR=Os12t0580900-01;KEGG=Os12t0580900-01
Chr12	irgsp1_rep	five_prime_UTR	24066298	24066387	.	+	.	Parent=Os12t0580900-01
Chr12	irgsp1_rep	CDS	24066388	24066667	.	+	0	Parent=Os12t0580900-01
Chr12	irgsp1_rep	CDS	24067283	24067650	.	+	2	Parent=Os12t0580900-01
Chr12	irgsp1_rep	CDS	24068517	24068753	.	+	0	Parent=Os12t0580900-01
Chr12	irgsp1_rep	CDS	24068834	24069127	.	+	0	Parent=Os12t0580900-01
Chr12	irgsp1_rep	three_prime_UTR	24069128	24069594	.	+	.	Parent=Os12t0580900-01
Chr12	irgsp1_rep	mRNA	24070744	24072408	.	-	.	ID=Os12t0580950-00;Name=Os12t0580950-00;Locus_id=Os12g0580950;Note=Hypothetical protein.;Transcript_evidence=FP092656 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0580950-00
Chr12	irgsp1_rep	five_prime_UTR	24072408	24072408	.	-	.	Parent=Os12t0580950-00
Chr12	irgsp1_rep	CDS	24071780	24072407	.	-	0	Parent=Os12t0580950-00
Chr12	irgsp1_rep	CDS	24070853	24071025	.	-	2	Parent=Os12t0580950-00
Chr12	irgsp1_rep	three_prime_UTR	24070744	24070852	.	-	.	Parent=Os12t0580950-00
Chr12	irgsp1_rep	mRNA	24087199	24088344	.	-	.	ID=Os12t0581300-01;Name=Os12t0581300-01;Locus_id=Os12g0581300;Note=Protein of unknown function DUF620 family protein.;Transcript_evidence=AK059252 (DDBJ%2C Best hit);ORF_evidence=Q2QN32 (UniProt);InterPro=Protein of unknown function DUF620 (IPR006873);NIAS_FLcDNA=001-024-H04;Expression=AK059252;TENOR=Os12t0581300-01;KEGG=Os12t0581300-01
Chr12	irgsp1_rep	five_prime_UTR	24088344	24088344	.	-	.	Parent=Os12t0581300-01
Chr12	irgsp1_rep	CDS	24087867	24088343	.	-	0	Parent=Os12t0581300-01
Chr12	irgsp1_rep	three_prime_UTR	24087199	24087866	.	-	.	Parent=Os12t0581300-01
Chr12	irgsp1_rep	mRNA	24088210	24089508	.	+	.	ID=Os12t0581350-00;Name=Os12t0581350-00;Locus_id=Os12g0581350;Note=Hypothetical gene.;Transcript_evidence=BT085554 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0581350-00;KEGG=Os12t0581350-00
Chr12	irgsp1_rep	five_prime_UTR	24088210	24088344	.	+	.	Parent=Os12t0581350-00
Chr12	irgsp1_rep	CDS	24088345	24088476	.	+	0	Parent=Os12t0581350-00
Chr12	irgsp1_rep	CDS	24088603	24088986	.	+	0	Parent=Os12t0581350-00
Chr12	irgsp1_rep	three_prime_UTR	24088987	24089508	.	+	.	Parent=Os12t0581350-00
Chr12	irgsp1_rep	mRNA	24105584	24114720	.	-	.	ID=Os12t0581400-00;Name=Os12t0581400-00;Locus_id=Os12g0581400;CGSNL Gene Symbol=SCP66;CGSNL Gene Name=SERINE CARBOXYPEPTIDASE 66;Oryzabase Gene Symbol Synonym(s)=OsSCP66;Oryzabase Gene Name Synonym(s)=Serine carboxypeptidase 66;Note=Similar to Serine carboxypeptidase family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QN31 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: serine-type carboxypeptidase activity (GO:0004185);InterPro=Peptidase S10%2C serine carboxypeptidase (IPR001563);Oryzabase=19238;TENOR=Os12t0581400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	24114154	24114720	.	-	0	Parent=Os12t0581400-00
Chr12	irgsp1_rep	CDS	24113373	24113475	.	-	0	Parent=Os12t0581400-00
Chr12	irgsp1_rep	CDS	24113199	24113236	.	-	2	Parent=Os12t0581400-00
Chr12	irgsp1_rep	CDS	24110954	24111037	.	-	0	Parent=Os12t0581400-00
Chr12	irgsp1_rep	CDS	24109818	24109939	.	-	0	Parent=Os12t0581400-00
Chr12	irgsp1_rep	CDS	24109146	24109259	.	-	1	Parent=Os12t0581400-00
Chr12	irgsp1_rep	CDS	24108962	24109007	.	-	1	Parent=Os12t0581400-00
Chr12	irgsp1_rep	CDS	24108609	24108666	.	-	0	Parent=Os12t0581400-00
Chr12	irgsp1_rep	CDS	24105584	24105609	.	-	2	Parent=Os12t0581400-00
Chr12	irgsp1_rep	mRNA	24116075	24116137	.	-	.	ID=Os12t0581450-00;Name=Os12t0581450-00;Locus_id=Os12g0581450;Note=Non-protein coding transcript.;Transcript_evidence=EU949846 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0581450-00
Chr12	irgsp1_rep	exon	24116075	24116137	.	-	.	Parent=Os12t0581450-00
Chr12	irgsp1_rep	mRNA	24119866	24123724	.	-	.	ID=Os12t0581600-01;Name=Os12t0581600-01;Locus_id=Os12g0581600;CGSNL Gene Symbol=NRAMP7;CGSNL Gene Name=NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 7;Oryzabase Gene Symbol Synonym(s)=OsNRAMP7;Oryzabase Gene Name Synonym(s)=BACTERIOCIDE EFFECT 7;Note=Similar to Integral membrane protein.;Transcript_evidence=AK071485 (DDBJ%2C Best hit);ORF_evidence=Q2QN30 (UniProt);GO=Biological Process: transport (GO:0006810),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Natural resistance-associated macrophage protein (IPR001046);NIAS_FLcDNA=J023095G02;Oryzabase=8331;Expression=AK071485;TENOR=Os12t0581600-01;KEGG=Os12t0581600-01
Chr12	irgsp1_rep	five_prime_UTR	24123597	24123724	.	-	.	Parent=Os12t0581600-01
Chr12	irgsp1_rep	CDS	24122968	24123596	.	-	0	Parent=Os12t0581600-01
Chr12	irgsp1_rep	CDS	24121571	24121707	.	-	1	Parent=Os12t0581600-01
Chr12	irgsp1_rep	CDS	24120834	24121483	.	-	2	Parent=Os12t0581600-01
Chr12	irgsp1_rep	CDS	24120107	24120316	.	-	0	Parent=Os12t0581600-01
Chr12	irgsp1_rep	three_prime_UTR	24119866	24120106	.	-	.	Parent=Os12t0581600-01
Chr12	irgsp1_rep	mRNA	24137775	24141775	.	+	.	ID=Os12t0581700-01;Name=Os12t0581700-01;Locus_id=Os12g0581700;Note=Conserved hypothetical protein.;Transcript_evidence=AK111563 (DDBJ%2C Best hit);ORF_evidence=A2ZM33 (UniProt);NIAS_FLcDNA=J013066M24;Expression=AK111563;TENOR=Os12t0581700-01;KEGG=Os12t0581700-01
Chr12	irgsp1_rep	five_prime_UTR	24137775	24137887	.	+	.	Parent=Os12t0581700-01
Chr12	irgsp1_rep	CDS	24137888	24138130	.	+	0	Parent=Os12t0581700-01
Chr12	irgsp1_rep	CDS	24138825	24139030	.	+	0	Parent=Os12t0581700-01
Chr12	irgsp1_rep	CDS	24139963	24140242	.	+	1	Parent=Os12t0581700-01
Chr12	irgsp1_rep	CDS	24140587	24140694	.	+	0	Parent=Os12t0581700-01
Chr12	irgsp1_rep	CDS	24140857	24141110	.	+	0	Parent=Os12t0581700-01
Chr12	irgsp1_rep	CDS	24141193	24141283	.	+	1	Parent=Os12t0581700-01
Chr12	irgsp1_rep	three_prime_UTR	24141284	24141775	.	+	.	Parent=Os12t0581700-01
Chr12	irgsp1_rep	mRNA	24140131	24141753	.	+	.	ID=Os12t0581700-02;Name=Os12t0581700-02;Locus_id=Os12g0581700;Note=Similar to predicted protein.;Transcript_evidence=AK060866 (DDBJ%2C Best hit);ORF_evidence=Q9SEL1 (UniProt);NIAS_FLcDNA=001-034-H02;Expression=AK060866;TENOR=Os12t0581700-02;KEGG=Os12t0581700-02
Chr12	irgsp1_rep	five_prime_UTR	24140131	24140134	.	+	.	Parent=Os12t0581700-02
Chr12	irgsp1_rep	CDS	24140135	24140242	.	+	0	Parent=Os12t0581700-02
Chr12	irgsp1_rep	CDS	24140587	24140694	.	+	0	Parent=Os12t0581700-02
Chr12	irgsp1_rep	CDS	24140857	24141110	.	+	0	Parent=Os12t0581700-02
Chr12	irgsp1_rep	CDS	24141193	24141283	.	+	1	Parent=Os12t0581700-02
Chr12	irgsp1_rep	three_prime_UTR	24141284	24141753	.	+	.	Parent=Os12t0581700-02
Chr12	irgsp1_rep	mRNA	24140589	24141779	.	+	.	ID=Os12t0581700-03;Name=Os12t0581700-03;Locus_id=Os12g0581700;Note=Similar to predicted protein.;Transcript_evidence=AK073739 (DDBJ%2C Best hit);ORF_evidence=Q9SEL1 (UniProt);NIAS_FLcDNA=J033065N21;Expression=AK073739;TENOR=Os12t0581700-03;KEGG=Os12t0581700-03
Chr12	irgsp1_rep	five_prime_UTR	24140589	24140589	.	+	.	Parent=Os12t0581700-03
Chr12	irgsp1_rep	CDS	24140590	24140694	.	+	0	Parent=Os12t0581700-03
Chr12	irgsp1_rep	CDS	24140857	24141110	.	+	0	Parent=Os12t0581700-03
Chr12	irgsp1_rep	CDS	24141193	24141283	.	+	1	Parent=Os12t0581700-03
Chr12	irgsp1_rep	three_prime_UTR	24141284	24141779	.	+	.	Parent=Os12t0581700-03
Chr12	irgsp1_rep	mRNA	24142655	24144843	.	+	.	ID=Os12t0581800-01;Name=Os12t0581800-01;Locus_id=Os12g0581800;CGSNL Gene Symbol=CYCA3%3B2;CGSNL Gene Name=CYCLIN-A3-2;Oryzabase Gene Symbol Synonym(s)=CycA3%3B2%2C CycA3%3Bos%3B2%2C Orysa%3BCycA3%3B2%2C CYCA2.1%2C CYCA2%3B1;Oryzabase Gene Name Synonym(s)=A-type cyclin 3%3B2;Note=Cyclin%2C A/B/D/E domain containing protein.;Transcript_evidence=AK110937 (DDBJ%2C Best hit);ORF_evidence=Q2QN26 (UniProt);GO=Biological Process: regulation of cyclin-dependent protein kinase activity (GO:0000079),Biological Process: regulation of cell cycle (GO:0051726),Cellular Component: nucleus (GO:0005634),Molecular Function: protein kinase binding (GO:0019901);InterPro=Cyclin%2C C-terminal (IPR004367),Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763),Cyclin A/B/D/E (IPR014400);NIAS_FLcDNA=002-173-G05;Oryzabase=13257;Expression=AK110937;TENOR=Os12t0581800-01;KEGG=Os12t0581800-01
Chr12	irgsp1_rep	five_prime_UTR	24142655	24142698	.	+	.	Parent=Os12t0581800-01
Chr12	irgsp1_rep	CDS	24142699	24143079	.	+	0	Parent=Os12t0581800-01
Chr12	irgsp1_rep	CDS	24143158	24143390	.	+	0	Parent=Os12t0581800-01
Chr12	irgsp1_rep	CDS	24143494	24143646	.	+	1	Parent=Os12t0581800-01
Chr12	irgsp1_rep	CDS	24143765	24143798	.	+	1	Parent=Os12t0581800-01
Chr12	irgsp1_rep	CDS	24143909	24144058	.	+	0	Parent=Os12t0581800-01
Chr12	irgsp1_rep	CDS	24144145	24144279	.	+	0	Parent=Os12t0581800-01
Chr12	irgsp1_rep	CDS	24144367	24144438	.	+	0	Parent=Os12t0581800-01
Chr12	irgsp1_rep	three_prime_UTR	24144439	24144843	.	+	.	Parent=Os12t0581800-01
Chr12	irgsp1_rep	mRNA	24145596	24146549	.	-	.	ID=Os12t0581900-01;Name=Os12t0581900-01;Locus_id=Os12g0581900;CGSNL Gene Symbol=DLN262;CGSNL Gene Name=DLN REPRESSOR 262;Oryzabase Gene Symbol Synonym(s)=OsDLN262;Oryzabase Gene Name Synonym(s)=DLN repressor 262%2C DLN motif protein 262;Note=Zinc finger%2C C2H2-like domain containing protein.;Transcript_evidence=AK066117 (DDBJ%2C Best hit);ORF_evidence=A2ZM35 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-like (IPR015880);NIAS_FLcDNA=J013056L24;Oryzabase=23242;Expression=AK066117;TENOR=Os12t0581900-01;KEGG=Os12t0581900-01
Chr12	irgsp1_rep	five_prime_UTR	24146494	24146549	.	-	.	Parent=Os12t0581900-01
Chr12	irgsp1_rep	CDS	24145906	24146493	.	-	0	Parent=Os12t0581900-01
Chr12	irgsp1_rep	three_prime_UTR	24145596	24145905	.	-	.	Parent=Os12t0581900-01
Chr12	irgsp1_rep	mRNA	24145952	24147956	.	+	.	ID=Os12t0581950-00;Name=Os12t0581950-00;Locus_id=Os12g0581950;Note=Hypothetical gene.;Transcript_evidence=EU947864 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0581950-00;KEGG=Os12t0581950-00
Chr12	irgsp1_rep	five_prime_UTR	24145952	24146260	.	+	.	Parent=Os12t0581950-00
Chr12	irgsp1_rep	CDS	24146261	24146593	.	+	0	Parent=Os12t0581950-00
Chr12	irgsp1_rep	three_prime_UTR	24146594	24147382	.	+	.	Parent=Os12t0581950-00
Chr12	irgsp1_rep	three_prime_UTR	24147546	24147621	.	+	.	Parent=Os12t0581950-00
Chr12	irgsp1_rep	three_prime_UTR	24147695	24147956	.	+	.	Parent=Os12t0581950-00
Chr12	irgsp1_rep	mRNA	24154936	24156974	.	-	.	ID=Os12t0582000-00;Name=Os12t0582000-00;Locus_id=Os12g0582000;Note=Similar to CytoChrome P450 family protein.;Transcript_evidence=tplb0005o22 (Wheat FLcDNA);ORF_evidence=Q2QN23 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os12t0582000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	24156031	24156974	.	-	0	Parent=Os12t0582000-00
Chr12	irgsp1_rep	CDS	24154936	24155617	.	-	1	Parent=Os12t0582000-00
Chr12	irgsp1_rep	mRNA	24176768	24178209	.	-	.	ID=Os12t0582600-01;Name=Os12t0582600-01;Locus_id=Os12g0582600;Note=TFIIS N-terminal domain containing protein.;Transcript_evidence=AK108157 (DDBJ%2C Best hit);ORF_evidence=NP_568218.1 (RefSeq);GO=Biological Process: transcription%2C DNA-dependent (GO:0006351),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Transcription factor IIS%2C N-terminal (IPR017923);NIAS_FLcDNA=002-139-G08;Expression=AK108157;TENOR=Os12t0582600-01;KEGG=Os12t0582600-01
Chr12	irgsp1_rep	five_prime_UTR	24178066	24178209	.	-	.	Parent=Os12t0582600-01
Chr12	irgsp1_rep	CDS	24177811	24178065	.	-	0	Parent=Os12t0582600-01
Chr12	irgsp1_rep	CDS	24177637	24177705	.	-	0	Parent=Os12t0582600-01
Chr12	irgsp1_rep	CDS	24177262	24177522	.	-	0	Parent=Os12t0582600-01
Chr12	irgsp1_rep	three_prime_UTR	24176768	24177261	.	-	.	Parent=Os12t0582600-01
Chr12	irgsp1_rep	mRNA	24180594	24182306	.	-	.	ID=Os12t0582666-00;Name=Os12t0582666-00;Locus_id=Os12g0582666;Note=CytoChrome P450 family protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QN23 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os12t0582666-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	24180594	24182306	.	-	0	Parent=Os12t0582666-00
Chr12	irgsp1_rep	mRNA	24184258	24186538	.	-	.	ID=Os12t0582700-01;Name=Os12t0582700-01;Locus_id=Os12g0582700;Note=Similar to CytoChrome P450.;Transcript_evidence=AK121238 (DDBJ%2C Best hit);ORF_evidence=Q4U0D3 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);NIAS_FLcDNA=J023096A02;TENOR=Os12t0582700-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	24185555	24186538	.	-	0	Parent=Os12t0582700-01
Chr12	irgsp1_rep	CDS	24184353	24184970	.	-	0	Parent=Os12t0582700-01
Chr12	irgsp1_rep	three_prime_UTR	24184258	24184352	.	-	.	Parent=Os12t0582700-01
Chr12	irgsp1_rep	mRNA	24191443	24197634	.	+	.	ID=Os12t0582800-01;Name=Os12t0582800-01;Locus_id=Os12g0582800;CGSNL Gene Symbol=OSCA2.4;CGSNL Gene Name=HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 2.4;Oryzabase Gene Symbol Synonym(s)=OsOSCA2.4%2C OsIOSCA2.4%2C OsDDP9%2C DDP9%2C OsDDP9.1;Oryzabase Gene Name Synonym(s)=Hyperosmolality-gated calcium-permeable channel 2.4%2C DUF221 Domain containing Protein 9;Note=Protein of unknown function DUF221 domain containing protein.;Transcript_evidence=AK111649 (DDBJ%2C Best hit);ORF_evidence=A2ZM40 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Domain of unknown function DUF221 (IPR003864);NIAS_FLcDNA=J013134M11;Oryzabase=19657;Expression=AK111649;TENOR=Os12t0582800-01;KEGG=Os12t0582800-01
Chr12	irgsp1_rep	five_prime_UTR	24191443	24191553	.	+	.	Parent=Os12t0582800-01
Chr12	irgsp1_rep	CDS	24191554	24191789	.	+	0	Parent=Os12t0582800-01
Chr12	irgsp1_rep	CDS	24191897	24192052	.	+	1	Parent=Os12t0582800-01
Chr12	irgsp1_rep	CDS	24192761	24192824	.	+	1	Parent=Os12t0582800-01
Chr12	irgsp1_rep	CDS	24193112	24193321	.	+	0	Parent=Os12t0582800-01
Chr12	irgsp1_rep	CDS	24194052	24194240	.	+	0	Parent=Os12t0582800-01
Chr12	irgsp1_rep	CDS	24194418	24194716	.	+	0	Parent=Os12t0582800-01
Chr12	irgsp1_rep	CDS	24194949	24195225	.	+	1	Parent=Os12t0582800-01
Chr12	irgsp1_rep	CDS	24195419	24195691	.	+	0	Parent=Os12t0582800-01
Chr12	irgsp1_rep	CDS	24196690	24196923	.	+	0	Parent=Os12t0582800-01
Chr12	irgsp1_rep	CDS	24197081	24197230	.	+	0	Parent=Os12t0582800-01
Chr12	irgsp1_rep	three_prime_UTR	24197231	24197634	.	+	.	Parent=Os12t0582800-01
Chr12	irgsp1_rep	mRNA	24202762	24204188	.	+	.	ID=Os12t0582900-01;Name=Os12t0582900-01;Locus_id=Os12g0582900;CGSNL Gene Symbol=ERF4;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 4;Oryzabase Gene Symbol Synonym(s)=OsERF#004%2C OsERF004%2C OsERF4%2C AP2/EREBP#159%2C AP2/EREBP159;Oryzabase Gene Name Synonym(s)=ethylene response factor 4%2C APETALA2/ethylene-responsive element binding protein 159;Note=Similar to AP2 domain containing protein%2C expressed.;Transcript_evidence=AK109606 (DDBJ%2C Best hit);ORF_evidence=Q2QN14 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=002-137-F03;Oryzabase=10531;TENOR=Os12t0582900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	24202762	24202762	.	+	.	Parent=Os12t0582900-01
Chr12	irgsp1_rep	CDS	24202763	24203956	.	+	0	Parent=Os12t0582900-01
Chr12	irgsp1_rep	three_prime_UTR	24203957	24204188	.	+	.	Parent=Os12t0582900-01
Chr12	irgsp1_rep	mRNA	24204768	24206629	.	-	.	ID=Os12t0583000-01;Name=Os12t0583000-01;Locus_id=Os12g0583000;Note=Similar to Glycosyl transferase%2C group 1 family protein%2C expressed.;Transcript_evidence=AK110753 (DDBJ%2C Best hit);ORF_evidence=Q2QN13 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058);InterPro=Glycosyl transferase%2C family 1 (IPR001296);NIAS_FLcDNA=002-170-G10;TENOR=Os12t0583000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	24206629	24206629	.	-	.	Parent=Os12t0583000-01
Chr12	irgsp1_rep	CDS	24206470	24206628	.	-	0	Parent=Os12t0583000-01
Chr12	irgsp1_rep	CDS	24206213	24206281	.	-	0	Parent=Os12t0583000-01
Chr12	irgsp1_rep	CDS	24205922	24206115	.	-	0	Parent=Os12t0583000-01
Chr12	irgsp1_rep	CDS	24205727	24205836	.	-	1	Parent=Os12t0583000-01
Chr12	irgsp1_rep	CDS	24205033	24205271	.	-	2	Parent=Os12t0583000-01
Chr12	irgsp1_rep	three_prime_UTR	24204768	24205032	.	-	.	Parent=Os12t0583000-01
Chr12	irgsp1_rep	mRNA	24212538	24214065	.	+	.	ID=Os12t0583300-01;Name=Os12t0583300-01;Locus_id=Os12g0583300;Note=Peptidase aspartic%2C catalytic domain containing protein.;Transcript_evidence=AK288036 (DDBJ%2C Best hit);ORF_evidence=NP_001067145.1 (RefSeq);GO=Biological Process: proteolysis (GO:0006508),Molecular Function: aspartic-type endopeptidase activity (GO:0004190);InterPro=Peptidase A1 (IPR001461),Peptidase aspartic%2C catalytic (IPR009007),Peptidase aspartic (IPR021109);NIAS_FLcDNA=J075142F04;TENOR=Os12t0583300-01;KEGG=Os12t0583300-01
Chr12	irgsp1_rep	five_prime_UTR	24212538	24212590	.	+	.	Parent=Os12t0583300-01
Chr12	irgsp1_rep	CDS	24212591	24213931	.	+	0	Parent=Os12t0583300-01
Chr12	irgsp1_rep	three_prime_UTR	24213932	24214065	.	+	.	Parent=Os12t0583300-01
Chr12	irgsp1_rep	mRNA	24215428	24217854	.	+	.	ID=Os12t0583400-01;Name=Os12t0583400-01;Locus_id=Os12g0583400;Note=Conserved hypothetical protein.;Transcript_evidence=AK102589 (DDBJ%2C Best hit);ORF_evidence=B8BMQ8 (UniProt);NIAS_FLcDNA=J033098F13;Expression=AK102589;TENOR=Os12t0583400-01;KEGG=Os12t0583400-01
Chr12	irgsp1_rep	five_prime_UTR	24215428	24215542	.	+	.	Parent=Os12t0583400-01
Chr12	irgsp1_rep	CDS	24215543	24215600	.	+	0	Parent=Os12t0583400-01
Chr12	irgsp1_rep	CDS	24215690	24215807	.	+	2	Parent=Os12t0583400-01
Chr12	irgsp1_rep	CDS	24216406	24216496	.	+	1	Parent=Os12t0583400-01
Chr12	irgsp1_rep	CDS	24216897	24217007	.	+	0	Parent=Os12t0583400-01
Chr12	irgsp1_rep	CDS	24217088	24217210	.	+	0	Parent=Os12t0583400-01
Chr12	irgsp1_rep	CDS	24217557	24217643	.	+	0	Parent=Os12t0583400-01
Chr12	irgsp1_rep	three_prime_UTR	24217644	24217854	.	+	.	Parent=Os12t0583400-01
Chr12	irgsp1_rep	mRNA	24218375	24224960	.	-	.	ID=Os12t0583500-01;Name=Os12t0583500-01;Locus_id=Os12g0583500;Note=BTB domain containing protein.;Transcript_evidence=AK071898 (DDBJ%2C Best hit);ORF_evidence=D9ZIQ8 (UniProt);GO=Biological Process: response to light stimulus (GO:0009416),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),NPH3 (IPR004249),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069);NIAS_FLcDNA=J013059B05;Expression=AK071898;TENOR=Os12t0583500-01;KEGG=Os12t0583500-01
Chr12	irgsp1_rep	five_prime_UTR	24224699	24224960	.	-	.	Parent=Os12t0583500-01
Chr12	irgsp1_rep	five_prime_UTR	24223563	24223943	.	-	.	Parent=Os12t0583500-01
Chr12	irgsp1_rep	CDS	24223501	24223562	.	-	0	Parent=Os12t0583500-01
Chr12	irgsp1_rep	CDS	24221608	24221677	.	-	1	Parent=Os12t0583500-01
Chr12	irgsp1_rep	CDS	24219934	24221133	.	-	0	Parent=Os12t0583500-01
Chr12	irgsp1_rep	CDS	24218869	24219453	.	-	0	Parent=Os12t0583500-01
Chr12	irgsp1_rep	three_prime_UTR	24218375	24218868	.	-	.	Parent=Os12t0583500-01
Chr12	irgsp1_rep	mRNA	24221812	24224960	.	-	.	ID=Os12t0583500-02;Name=Os12t0583500-02;Locus_id=Os12g0583500;Note=Conserved hypothetical protein.;Transcript_evidence=AK063508 (DDBJ%2C Best hit);ORF_evidence=A3CIV9 (UniProt);NIAS_FLcDNA=001-116-F08;TENOR=Os12t0583500-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	24224699	24224960	.	-	.	Parent=Os12t0583500-02
Chr12	irgsp1_rep	five_prime_UTR	24223563	24223943	.	-	.	Parent=Os12t0583500-02
Chr12	irgsp1_rep	CDS	24223497	24223562	.	-	0	Parent=Os12t0583500-02
Chr12	irgsp1_rep	three_prime_UTR	24221812	24223496	.	-	.	Parent=Os12t0583500-02
Chr12	irgsp1_rep	mRNA	24237212	24238416	.	-	.	ID=Os12t0583700-00;Name=Os12t0583700-00;Locus_id=Os12g0583700;CGSNL Gene Symbol=ZFP252;CGSNL Gene Name=ZINC FINGER PROTEIN 252;Oryzabase Gene Symbol Synonym(s)=RZF71%2C DLN263%2C OsDLN263;Oryzabase Gene Name Synonym(s)=DLN repressor 263%2C DLN motif protein 263;Note=Zinc finger%2C C2H2-type domain containing protein.;Transcript_evidence=CT841608 (DDBJ%2C Best hit);ORF_evidence=NP_001067148.1 (RefSeq);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C2H2 (IPR007087),Zinc finger%2C C2H2-type/integrase%2C DNA-binding (IPR013087),Zinc finger%2C C2H2-like (IPR015880);Oryzabase=8646;TENOR=Os12t0583700-00;KEGG=Os12t0583700-00
Chr12	irgsp1_rep	five_prime_UTR	24238269	24238416	.	-	.	Parent=Os12t0583700-00
Chr12	irgsp1_rep	CDS	24237525	24238268	.	-	0	Parent=Os12t0583700-00
Chr12	irgsp1_rep	three_prime_UTR	24237212	24237524	.	-	.	Parent=Os12t0583700-00
Chr12	irgsp1_rep	mRNA	24238425	24243743	.	+	.	ID=Os12t0583801-01;Name=Os12t0583801-01;Locus_id=Os12g0583801;Note=Conserved hypothetical protein.;Transcript_evidence=AK288458 (DDBJ%2C Best hit);ORF_evidence=Q5TKD0 (UniProt);NIAS_FLcDNA=J090035E13;TENOR=Os12t0583801-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	24238425	24242103	.	+	.	Parent=Os12t0583801-01
Chr12	irgsp1_rep	CDS	24242104	24242331	.	+	0	Parent=Os12t0583801-01
Chr12	irgsp1_rep	three_prime_UTR	24242332	24243743	.	+	.	Parent=Os12t0583801-01
Chr12	irgsp1_rep	mRNA	24246429	24249939	.	+	.	ID=Os12t0583900-01;Name=Os12t0583900-01;Locus_id=Os12g0583900;Note=Similar to PDE135 (PIGMENT DEFECTIVE EMBRYO 135)%3B transmembrane transporter.;Transcript_evidence=AK102529 (DDBJ%2C Best hit);ORF_evidence=NP_180219.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Xanthine/uracil/vitamin C permease (IPR006043);NIAS_FLcDNA=J033096D06;TENOR=Os12t0583900-01
Chr12	irgsp1_rep	five_prime_UTR	24246429	24246614	.	+	.	Parent=Os12t0583900-01
Chr12	irgsp1_rep	five_prime_UTR	24246967	24247023	.	+	.	Parent=Os12t0583900-01
Chr12	irgsp1_rep	five_prime_UTR	24247337	24247351	.	+	.	Parent=Os12t0583900-01
Chr12	irgsp1_rep	CDS	24247352	24247511	.	+	0	Parent=Os12t0583900-01
Chr12	irgsp1_rep	CDS	24248372	24248469	.	+	2	Parent=Os12t0583900-01
Chr12	irgsp1_rep	CDS	24248570	24248746	.	+	0	Parent=Os12t0583900-01
Chr12	irgsp1_rep	CDS	24248864	24248964	.	+	0	Parent=Os12t0583900-01
Chr12	irgsp1_rep	CDS	24249058	24249133	.	+	1	Parent=Os12t0583900-01
Chr12	irgsp1_rep	CDS	24249217	24249276	.	+	0	Parent=Os12t0583900-01
Chr12	irgsp1_rep	CDS	24249373	24249569	.	+	0	Parent=Os12t0583900-01
Chr12	irgsp1_rep	CDS	24249670	24249766	.	+	1	Parent=Os12t0583900-01
Chr12	irgsp1_rep	CDS	24249852	24249939	.	+	0	Parent=Os12t0583900-01
Chr12	irgsp1_rep	mRNA	24246553	24252312	.	+	.	ID=Os12t0583900-02;Name=Os12t0583900-02;Locus_id=Os12g0583900;Note=Similar to Permease.;Transcript_evidence=AK065030 (DDBJ%2C Best hit),AK065297 (DDBJ%2C Best hit);ORF_evidence=NP_180219.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Xanthine/uracil/vitamin C permease (IPR006043);NIAS_FLcDNA=J013001G19,J013002N15;TENOR=Os12t0583900-02
Chr12	irgsp1_rep	five_prime_UTR	24246553	24246614	.	+	.	Parent=Os12t0583900-02
Chr12	irgsp1_rep	five_prime_UTR	24247337	24247351	.	+	.	Parent=Os12t0583900-02
Chr12	irgsp1_rep	CDS	24247352	24247511	.	+	0	Parent=Os12t0583900-02
Chr12	irgsp1_rep	CDS	24248372	24248469	.	+	2	Parent=Os12t0583900-02
Chr12	irgsp1_rep	CDS	24248570	24248746	.	+	0	Parent=Os12t0583900-02
Chr12	irgsp1_rep	CDS	24248864	24248964	.	+	0	Parent=Os12t0583900-02
Chr12	irgsp1_rep	CDS	24249058	24249133	.	+	1	Parent=Os12t0583900-02
Chr12	irgsp1_rep	CDS	24249217	24249276	.	+	0	Parent=Os12t0583900-02
Chr12	irgsp1_rep	CDS	24249373	24249569	.	+	0	Parent=Os12t0583900-02
Chr12	irgsp1_rep	CDS	24249670	24249766	.	+	1	Parent=Os12t0583900-02
Chr12	irgsp1_rep	CDS	24249852	24249938	.	+	0	Parent=Os12t0583900-02
Chr12	irgsp1_rep	CDS	24250299	24250357	.	+	0	Parent=Os12t0583900-02
Chr12	irgsp1_rep	CDS	24250909	24251000	.	+	1	Parent=Os12t0583900-02
Chr12	irgsp1_rep	CDS	24251080	24251157	.	+	2	Parent=Os12t0583900-02
Chr12	irgsp1_rep	CDS	24251265	24251425	.	+	2	Parent=Os12t0583900-02
Chr12	irgsp1_rep	CDS	24251677	24251904	.	+	0	Parent=Os12t0583900-02
Chr12	irgsp1_rep	three_prime_UTR	24251905	24252312	.	+	.	Parent=Os12t0583900-02
Chr12	irgsp1_rep	mRNA	24249683	24252130	.	+	.	ID=Os12t0583900-03;Name=Os12t0583900-03;Locus_id=Os12g0583900;Note=Similar to PDE135 (PIGMENT DEFECTIVE EMBRYO 135)%3B transmembrane transporter.;Transcript_evidence=AK061839 (DDBJ%2C Best hit);ORF_evidence=XP_002878973.1 (RefSeq);GO=Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Xanthine/uracil/vitamin C permease (IPR006043);NIAS_FLcDNA=001-040-E01;Expression=AK061839;TENOR=Os12t0583900-03;KEGG=Os12t0583900-03
Chr12	irgsp1_rep	CDS	24249683	24249766	.	+	0	Parent=Os12t0583900-03
Chr12	irgsp1_rep	CDS	24249852	24249938	.	+	0	Parent=Os12t0583900-03
Chr12	irgsp1_rep	CDS	24250299	24250357	.	+	0	Parent=Os12t0583900-03
Chr12	irgsp1_rep	CDS	24250909	24251000	.	+	1	Parent=Os12t0583900-03
Chr12	irgsp1_rep	CDS	24251080	24251157	.	+	2	Parent=Os12t0583900-03
Chr12	irgsp1_rep	CDS	24251265	24251425	.	+	2	Parent=Os12t0583900-03
Chr12	irgsp1_rep	CDS	24251677	24251904	.	+	0	Parent=Os12t0583900-03
Chr12	irgsp1_rep	three_prime_UTR	24251905	24252130	.	+	.	Parent=Os12t0583900-03
Chr12	irgsp1_rep	mRNA	24247351	24251993	.	-	.	ID=Os12t0584050-00;Name=Os12t0584050-00;Locus_id=Os12g0584050;Note=Non-protein coding transcript.;Transcript_evidence=BT018596 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0584050-00
Chr12	irgsp1_rep	exon	24251686	24251993	.	-	.	Parent=Os12t0584050-00
Chr12	irgsp1_rep	exon	24251263	24251433	.	-	.	Parent=Os12t0584050-00
Chr12	irgsp1_rep	exon	24251066	24251155	.	-	.	Parent=Os12t0584050-00
Chr12	irgsp1_rep	exon	24250886	24250989	.	-	.	Parent=Os12t0584050-00
Chr12	irgsp1_rep	exon	24249850	24249969	.	-	.	Parent=Os12t0584050-00
Chr12	irgsp1_rep	exon	24249647	24249764	.	-	.	Parent=Os12t0584050-00
Chr12	irgsp1_rep	exon	24249327	24249545	.	-	.	Parent=Os12t0584050-00
Chr12	irgsp1_rep	exon	24249058	24249142	.	-	.	Parent=Os12t0584050-00
Chr12	irgsp1_rep	exon	24248846	24248963	.	-	.	Parent=Os12t0584050-00
Chr12	irgsp1_rep	exon	24248547	24248727	.	-	.	Parent=Os12t0584050-00
Chr12	irgsp1_rep	exon	24248366	24248449	.	-	.	Parent=Os12t0584050-00
Chr12	irgsp1_rep	exon	24247351	24247506	.	-	.	Parent=Os12t0584050-00
Chr12	irgsp1_rep	mRNA	24273980	24275502	.	-	.	ID=Os12t0584200-01;Name=Os12t0584200-01;Locus_id=Os12g0584200;Note=Similar to cDNA clone:J013075O22%2C full insert sequence.;Transcript_evidence=AK071424 (DDBJ%2C Best hit);ORF_evidence=B7ECP7 (UniProt);NIAS_FLcDNA=J023091J20;Expression=AK071424;TENOR=Os12t0584200-01;KEGG=Os12t0584200-01
Chr12	irgsp1_rep	five_prime_UTR	24275281	24275502	.	-	.	Parent=Os12t0584200-01
Chr12	irgsp1_rep	CDS	24274618	24275280	.	-	0	Parent=Os12t0584200-01
Chr12	irgsp1_rep	three_prime_UTR	24273980	24274617	.	-	.	Parent=Os12t0584200-01
Chr12	irgsp1_rep	mRNA	24274319	24275378	.	-	.	ID=Os12t0584200-02;Name=Os12t0584200-02;Locus_id=Os12g0584200;Note=Conserved hypothetical protein.;Transcript_evidence=AK066829 (DDBJ%2C Best hit);ORF_evidence=Q2QN01 (UniProt);NIAS_FLcDNA=J013075O22;TENOR=Os12t0584200-02;KEGG=Os12t0584200-02
Chr12	irgsp1_rep	five_prime_UTR	24275281	24275378	.	-	.	Parent=Os12t0584200-02
Chr12	irgsp1_rep	CDS	24274881	24275280	.	-	0	Parent=Os12t0584200-02
Chr12	irgsp1_rep	CDS	24274645	24274700	.	-	2	Parent=Os12t0584200-02
Chr12	irgsp1_rep	CDS	24274566	24274574	.	-	0	Parent=Os12t0584200-02
Chr12	irgsp1_rep	three_prime_UTR	24274319	24274565	.	-	.	Parent=Os12t0584200-02
Chr12	irgsp1_rep	mRNA	24328381	24333235	.	-	.	ID=Os12t0584700-01;Name=Os12t0584700-01;Locus_id=Os12g0584700;Note=Similar to Aminotransferase-like.;Transcript_evidence=AK073678 (DDBJ%2C Best hit);ORF_evidence=C8TEY3 (UniProt);NIAS_FLcDNA=J033050J03;Expression=AK073678;TENOR=Os12t0584700-01;KEGG=Os12t0584700-01
Chr12	irgsp1_rep	five_prime_UTR	24333069	24333235	.	-	.	Parent=Os12t0584700-01
Chr12	irgsp1_rep	five_prime_UTR	24331048	24331129	.	-	.	Parent=Os12t0584700-01
Chr12	irgsp1_rep	five_prime_UTR	24329672	24329721	.	-	.	Parent=Os12t0584700-01
Chr12	irgsp1_rep	CDS	24329546	24329671	.	-	0	Parent=Os12t0584700-01
Chr12	irgsp1_rep	CDS	24329012	24329449	.	-	0	Parent=Os12t0584700-01
Chr12	irgsp1_rep	three_prime_UTR	24328381	24329011	.	-	.	Parent=Os12t0584700-01
Chr12	irgsp1_rep	mRNA	24359131	24360593	.	-	.	ID=Os12t0585300-01;Name=Os12t0585300-01;Locus_id=Os12g0585300;Oryzabase Gene Symbol Synonym(s)=OsFbox670%2C Os_F0419;Oryzabase Gene Name Synonym(s)=F-box protein 670;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK120895 (DDBJ%2C Best hit);ORF_evidence=A2ZM54 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=F-box domain%2C cyclin-like (IPR001810),Protein of unknown function DUF295 (IPR005174),F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J023030A06;Oryzabase=17430;Expression=AK120895;TENOR=Os12t0585300-01;KEGG=Os12t0585300-01
Chr12	irgsp1_rep	five_prime_UTR	24360523	24360593	.	-	.	Parent=Os12t0585300-01
Chr12	irgsp1_rep	CDS	24359266	24360522	.	-	0	Parent=Os12t0585300-01
Chr12	irgsp1_rep	three_prime_UTR	24359131	24359265	.	-	.	Parent=Os12t0585300-01
Chr12	irgsp1_rep	mRNA	24374356	24377203	.	+	.	ID=Os12t0585650-01;Name=Os12t0585650-01;Locus_id=Os12g0585650;RAP-DB Gene Symbol Synonym(s)=osa-miR5791;Note=Primary microRNA of osa-miR5791%3B Target gene(s): (Os12g0217400);Transcript_evidence=AK288633;ORF_evidence=NONE;NIAS_FLcDNA=J090055E11;Manual Curation=January 24%2C 2018;Literature_PMID=29045473;TENOR=Os12t0585650-01
Chr12	irgsp1_rep	exon	24374356	24377203	.	+	.	Parent=Os12t0585650-01
Chr12	irgsp1_rep	mRNA	24456516	24459081	.	+	.	ID=Os12t0586000-01;Name=Os12t0586000-01;Locus_id=Os12g0586000;Note=Similar to Disease resistance protein ADR1 (Activated disease resistance protein 1).;Transcript_evidence=AK119516 (DDBJ%2C Best hit);ORF_evidence=Q2QMY3 (UniProt);GO=Biological Process: defense response (GO:0006952),Molecular Function: protein binding (GO:0005515),Molecular Function: ADP binding (GO:0043531);InterPro=Disease resistance protein (IPR000767),Leucine-rich repeat (IPR001611),NB-ARC (IPR002182);NIAS_FLcDNA=001-202-C04;Expression=AK119516;TENOR=Os12t0586000-01;KEGG=Os12t0586000-01
Chr12	irgsp1_rep	five_prime_UTR	24456516	24456550	.	+	.	Parent=Os12t0586000-01
Chr12	irgsp1_rep	CDS	24456551	24456560	.	+	0	Parent=Os12t0586000-01
Chr12	irgsp1_rep	CDS	24456852	24457602	.	+	2	Parent=Os12t0586000-01
Chr12	irgsp1_rep	CDS	24457695	24457906	.	+	1	Parent=Os12t0586000-01
Chr12	irgsp1_rep	CDS	24458153	24458985	.	+	2	Parent=Os12t0586000-01
Chr12	irgsp1_rep	three_prime_UTR	24458986	24459081	.	+	.	Parent=Os12t0586000-01
Chr12	irgsp1_rep	mRNA	24459198	24462001	.	-	.	ID=Os12t0586100-01;Name=Os12t0586100-01;Locus_id=Os12g0586100;RAP-DB Gene Symbol Synonym(s)=SAPK9%2C OsSAPK9;RAP-DB Gene Name Synonym(s)=STRESS/ABA-ACTIVATED PROTEIN KINASE 9%2C stress/ABA-activated protein kinase 9%2C Stress-Activated Protein Kinase 9;CGSNL Gene Symbol=SAPK9;CGSNL Gene Name=STRESS/ABA-ACTIVATED PROTEIN KINASE 9;Oryzabase Gene Symbol Synonym(s)=OsSAPK9;Oryzabase Gene Name Synonym(s)=stress/ABA-activated protein kinase 9%2C Stress-Activated Protein Kinase 9;Note=Serine/threonine protein kinase%2C Abscisic acid (ABA)-activated protein kinase%2C Hyperosmotic stress response%2C ABA signal transduction;Transcript_evidence=AB125310,AK069697;ORF_evidence=Q75V57;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain (IPR011009),Protein kinase domain (IPR000719),Serine/threonine/dual specificity protein kinase%2C catalytic  domain (IPR002290),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J023028J06;Manual Curation=December 10%2C 2015;Literature_PMID=16359387,15084714;Oryzabase=9817;Expression=AK069697;TENOR=Os12t0586100-01;KEGG=Os12t0586100-01 (EC:2.7.1.37, EC:2.7.11.1)
Chr12	irgsp1_rep	five_prime_UTR	24461792	24462001	.	-	.	Parent=Os12t0586100-01
Chr12	irgsp1_rep	CDS	24461618	24461791	.	-	0	Parent=Os12t0586100-01
Chr12	irgsp1_rep	CDS	24461431	24461505	.	-	0	Parent=Os12t0586100-01
Chr12	irgsp1_rep	CDS	24461189	24461290	.	-	0	Parent=Os12t0586100-01
Chr12	irgsp1_rep	CDS	24461019	24461072	.	-	0	Parent=Os12t0586100-01
Chr12	irgsp1_rep	CDS	24460811	24460903	.	-	0	Parent=Os12t0586100-01
Chr12	irgsp1_rep	CDS	24460474	24460566	.	-	0	Parent=Os12t0586100-01
Chr12	irgsp1_rep	CDS	24460141	24460245	.	-	0	Parent=Os12t0586100-01
Chr12	irgsp1_rep	CDS	24459918	24460016	.	-	0	Parent=Os12t0586100-01
Chr12	irgsp1_rep	CDS	24459541	24459831	.	-	0	Parent=Os12t0586100-01
Chr12	irgsp1_rep	three_prime_UTR	24459198	24459540	.	-	.	Parent=Os12t0586100-01
Chr12	irgsp1_rep	mRNA	24475101	24477611	.	+	.	ID=Os12t0586300-00;Name=Os12t0586300-00;Locus_id=Os12g0586300;Note=Myb-like DNA-binding domain%2C SHAQKYF class domain containing protein.;Transcript_evidence=AK375760 (DDBJ);ORF_evidence=NP_001067156.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Myb-like DNA-binding domain%2C SHAQKYF class (IPR006447),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);TENOR=Os12t0586300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	24475101	24475362	.	+	0	Parent=Os12t0586300-00
Chr12	irgsp1_rep	CDS	24475457	24475731	.	+	2	Parent=Os12t0586300-00
Chr12	irgsp1_rep	CDS	24476493	24476769	.	+	0	Parent=Os12t0586300-00
Chr12	irgsp1_rep	CDS	24477004	24477080	.	+	2	Parent=Os12t0586300-00
Chr12	irgsp1_rep	CDS	24477200	24477496	.	+	0	Parent=Os12t0586300-00
Chr12	irgsp1_rep	three_prime_UTR	24477497	24477611	.	+	.	Parent=Os12t0586300-00
Chr12	irgsp1_rep	mRNA	24478869	24482531	.	+	.	ID=Os12t0586400-00;Name=Os12t0586400-00;Locus_id=Os12g0586400;Note=Tubulin/FtsZ%2C GTPase domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QMY0 (UniProt);GO=Biological Process: protein polymerization (GO:0051258),Cellular Component: protein complex (GO:0043234);InterPro=Tubulin/FtsZ%2C GTPase domain (IPR003008),Misato Segment II%2C myosin-like (IPR019605);TENOR=Os12t0586400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	24478869	24478940	.	+	0	Parent=Os12t0586400-00
Chr12	irgsp1_rep	CDS	24479078	24479179	.	+	0	Parent=Os12t0586400-00
Chr12	irgsp1_rep	CDS	24479312	24479357	.	+	0	Parent=Os12t0586400-00
Chr12	irgsp1_rep	CDS	24479665	24479728	.	+	2	Parent=Os12t0586400-00
Chr12	irgsp1_rep	CDS	24480370	24480721	.	+	1	Parent=Os12t0586400-00
Chr12	irgsp1_rep	CDS	24480870	24481091	.	+	0	Parent=Os12t0586400-00
Chr12	irgsp1_rep	CDS	24481636	24481684	.	+	0	Parent=Os12t0586400-00
Chr12	irgsp1_rep	CDS	24481772	24481891	.	+	2	Parent=Os12t0586400-00
Chr12	irgsp1_rep	CDS	24482083	24482531	.	+	2	Parent=Os12t0586400-00
Chr12	irgsp1_rep	mRNA	24485242	24485916	.	-	.	ID=Os12t0586500-01;Name=Os12t0586500-01;Locus_id=Os12g0586500;Note=Hypothetical protein.;Transcript_evidence=AK107528 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-129-G06;TENOR=Os12t0586500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	24485916	24485916	.	-	.	Parent=Os12t0586500-01
Chr12	irgsp1_rep	CDS	24485589	24485915	.	-	0	Parent=Os12t0586500-01
Chr12	irgsp1_rep	CDS	24485416	24485511	.	-	0	Parent=Os12t0586500-01
Chr12	irgsp1_rep	three_prime_UTR	24485242	24485415	.	-	.	Parent=Os12t0586500-01
Chr12	irgsp1_rep	mRNA	24485299	24490983	.	+	.	ID=Os12t0586600-01;Name=Os12t0586600-01;Locus_id=Os12g0586600;CGSNL Gene Symbol=ACA2;CGSNL Gene Name=CA2+-ATPASE 2;Oryzabase Gene Symbol Synonym(s)=osACA2%2C OsACA10%2C OsPM12ATP;Oryzabase Gene Name Synonym(s)=Ca2+ P-Type ATPase 2;Note=Similar to Plasma membrane Ca2+-ATPase.;Transcript_evidence=AK066259 (DDBJ%2C Best hit);ORF_evidence=Q8L8A0 (UniProt);GO=Biological Process: ATP biosynthetic process (GO:0006754),Biological Process: cation transport (GO:0006812),Biological Process: metabolic process (GO:0008152),Biological Process: calcium ion transmembrane transport (GO:0070588),Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: calcium-transporting ATPase activity (GO:0005388),Molecular Function: calmodulin binding (GO:0005516),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C catalyzing transmembrane movement of substances (GO:0016820),Molecular Function: metal ion binding (GO:0046872);InterPro=ATPase%2C P-type%2C H+ transporting proton pump (IPR000695),ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),ATPase%2C P-type cation-transporter%2C N-terminal (IPR004014),Haloacid dehalogenase-like hydrolase (IPR005834),ATPase%2C P-type cation-transporter%2C C-terminal (IPR006068),ATPase%2C P-type%2C calcium-transporting%2C PMCA-type (IPR006408),ATPase%2C P-type%2C ATPase-associated domain (IPR008250),ATPase%2C P-type phosphorylation site (IPR018303),HAD-like domain (IPR023214),ATPase%2C P-type%2C  transmembrane domain (IPR023298),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C  P-type%2C cytoplasmic transduction domain A (IPR023300),ATPase%2C cation-transporting%2C domain N (IPR023306),Calcium-transporting ATPase%2C N-terminal autoinhibitory domain (IPR024750);NIAS_FLcDNA=J013059H11;Oryzabase=13234;Expression=AK066259;TENOR=Os12t0586600-01;KEGG=Os12t0586600-01
Chr12	irgsp1_rep	five_prime_UTR	24485299	24485576	.	+	.	Parent=Os12t0586600-01
Chr12	irgsp1_rep	CDS	24485577	24485753	.	+	0	Parent=Os12t0586600-01
Chr12	irgsp1_rep	CDS	24486447	24486501	.	+	0	Parent=Os12t0586600-01
Chr12	irgsp1_rep	CDS	24486624	24488575	.	+	2	Parent=Os12t0586600-01
Chr12	irgsp1_rep	CDS	24488661	24488819	.	+	0	Parent=Os12t0586600-01
Chr12	irgsp1_rep	CDS	24489251	24489422	.	+	0	Parent=Os12t0586600-01
Chr12	irgsp1_rep	CDS	24489504	24489802	.	+	2	Parent=Os12t0586600-01
Chr12	irgsp1_rep	CDS	24490410	24490658	.	+	0	Parent=Os12t0586600-01
Chr12	irgsp1_rep	three_prime_UTR	24490659	24490983	.	+	.	Parent=Os12t0586600-01
Chr12	irgsp1_rep	mRNA	24485316	24489691	.	+	.	ID=Os12t0586600-02;Name=Os12t0586600-02;Locus_id=Os12g0586600;CGSNL Gene Symbol=ACA2;CGSNL Gene Name=CA2+-ATPASE 2;Oryzabase Gene Symbol Synonym(s)=osACA2%2C OsACA10%2C OsPM12ATP;Oryzabase Gene Name Synonym(s)=Ca2+ P-Type ATPase 2;Note=Similar to Type IIB calcium ATPase MCA5.;Transcript_evidence=AK100436 (DDBJ%2C Best hit);ORF_evidence=Q8L8A0 (UniProt);GO=Biological Process: ATP biosynthetic process (GO:0006754),Biological Process: cation transport (GO:0006812),Biological Process: metabolic process (GO:0008152),Biological Process: calcium ion transmembrane transport (GO:0070588),Cellular Component: membrane (GO:0016020),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: calcium-transporting ATPase activity (GO:0005388),Molecular Function: calmodulin binding (GO:0005516),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662),Molecular Function: hydrolase activity%2C acting on acid anhydrides%2C catalyzing transmembrane movement of substances (GO:0016820),Molecular Function: metal ion binding (GO:0046872);InterPro=ATPase%2C P-type%2C H+ transporting proton pump (IPR000695),ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),ATPase%2C P-type cation-transporter%2C N-terminal (IPR004014),Haloacid dehalogenase-like hydrolase (IPR005834),ATPase%2C P-type cation-transporter%2C C-terminal (IPR006068),ATPase%2C P-type%2C calcium-transporting%2C PMCA-type (IPR006408),ATPase%2C P-type%2C ATPase-associated domain (IPR008250),ATPase%2C P-type phosphorylation site (IPR018303),HAD-like domain (IPR023214),ATPase%2C P-type%2C  transmembrane domain (IPR023298),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C  P-type%2C cytoplasmic transduction domain A (IPR023300),ATPase%2C cation-transporting%2C domain N (IPR023306),Calcium-transporting ATPase%2C N-terminal autoinhibitory domain (IPR024750);NIAS_FLcDNA=J023088M17;Oryzabase=13234;Expression=AK100436;TENOR=Os12t0586600-02;KEGG=Os12t0586600-02
Chr12	irgsp1_rep	five_prime_UTR	24485316	24485576	.	+	.	Parent=Os12t0586600-02
Chr12	irgsp1_rep	CDS	24485577	24485753	.	+	0	Parent=Os12t0586600-02
Chr12	irgsp1_rep	CDS	24486447	24486501	.	+	0	Parent=Os12t0586600-02
Chr12	irgsp1_rep	CDS	24486624	24488575	.	+	2	Parent=Os12t0586600-02
Chr12	irgsp1_rep	CDS	24488661	24488819	.	+	0	Parent=Os12t0586600-02
Chr12	irgsp1_rep	CDS	24489251	24489422	.	+	0	Parent=Os12t0586600-02
Chr12	irgsp1_rep	CDS	24489504	24489691	.	+	2	Parent=Os12t0586600-02
Chr12	irgsp1_rep	mRNA	24514584	24518724	.	-	.	ID=Os12t0587100-00;Name=Os12t0587100-00;Locus_id=Os12g0587100;Note=Similar to RSSG8.;Transcript_evidence=ab initio prediction;ORF_evidence=Q94CF9 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515);InterPro=RNA recognition motif domain (IPR000504),Ankyrin repeat (IPR002110),Nucleotide-binding%2C alpha-beta plait (IPR012677),Ubiquitin supergroup (IPR019955),Ankyrin repeat-containing domain (IPR020683),Small ubiquitin-related modifier%2C SUMO (IPR022617);TENOR=Os12t0587100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	24518624	24518724	.	-	0	Parent=Os12t0587100-00
Chr12	irgsp1_rep	CDS	24518404	24518512	.	-	1	Parent=Os12t0587100-00
Chr12	irgsp1_rep	CDS	24518176	24518321	.	-	0	Parent=Os12t0587100-00
Chr12	irgsp1_rep	CDS	24518015	24518088	.	-	1	Parent=Os12t0587100-00
Chr12	irgsp1_rep	CDS	24517493	24517614	.	-	2	Parent=Os12t0587100-00
Chr12	irgsp1_rep	CDS	24517341	24517413	.	-	0	Parent=Os12t0587100-00
Chr12	irgsp1_rep	CDS	24515329	24517244	.	-	2	Parent=Os12t0587100-00
Chr12	irgsp1_rep	CDS	24514901	24515034	.	-	0	Parent=Os12t0587100-00
Chr12	irgsp1_rep	CDS	24514772	24514824	.	-	1	Parent=Os12t0587100-00
Chr12	irgsp1_rep	CDS	24514584	24514699	.	-	2	Parent=Os12t0587100-00
Chr12	irgsp1_rep	mRNA	24516431	24517201	.	+	.	ID=Os12t0587116-00;Name=Os12t0587116-00;Locus_id=Os12g0587116;Note=Non-protein coding transcript.;Transcript_evidence=AK358137 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0587116-00
Chr12	irgsp1_rep	exon	24516431	24517201	.	+	.	Parent=Os12t0587116-00
Chr12	irgsp1_rep	mRNA	24526715	24529814	.	+	.	ID=Os12t0587200-01;Name=Os12t0587200-01;Locus_id=Os12g0587200;Note=Protein of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK066483 (DDBJ%2C Best hit);ORF_evidence=B8BMR8 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=J013070M16;Expression=AK066483;TENOR=Os12t0587200-01;KEGG=Os12t0587200-01
Chr12	irgsp1_rep	five_prime_UTR	24526715	24526804	.	+	.	Parent=Os12t0587200-01
Chr12	irgsp1_rep	CDS	24526805	24528328	.	+	0	Parent=Os12t0587200-01
Chr12	irgsp1_rep	three_prime_UTR	24528329	24529001	.	+	.	Parent=Os12t0587200-01
Chr12	irgsp1_rep	three_prime_UTR	24529435	24529814	.	+	.	Parent=Os12t0587200-01
Chr12	irgsp1_rep	mRNA	24589162	24591131	.	-	.	ID=Os12t0588200-00;Name=Os12t0588200-00;Locus_id=Os12g0588200;Note=Hypothetical protein.;Transcript_evidence=AK070117 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;TENOR=Os12t0588200-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	24590902	24591131	.	-	.	Parent=Os12t0588200-00
Chr12	irgsp1_rep	five_prime_UTR	24589451	24590820	.	-	.	Parent=Os12t0588200-00
Chr12	irgsp1_rep	CDS	24589232	24589450	.	-	0	Parent=Os12t0588200-00
Chr12	irgsp1_rep	three_prime_UTR	24589162	24589231	.	-	.	Parent=Os12t0588200-00
Chr12	irgsp1_rep	mRNA	24595783	24596141	.	+	.	ID=Os12t0588400-00;Name=Os12t0588400-00;Locus_id=Os12g0588400;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001177035.1 (RefSeq);TENOR=Os12t0588400-00
Chr12	irgsp1_rep	CDS	24595783	24595798	.	+	0	Parent=Os12t0588400-00
Chr12	irgsp1_rep	CDS	24595942	24596141	.	+	2	Parent=Os12t0588400-00
Chr12	irgsp1_rep	mRNA	24619889	24622059	.	-	.	ID=Os12t0588800-01;Name=Os12t0588800-01;Locus_id=Os12g0588800;CGSNL Gene Symbol=CYCD5%3B1;CGSNL Gene Name=CYCLIN-D5-1;Oryzabase Gene Symbol Synonym(s)=CycD5%3B1%2C CycD5%3Bos%3B1%2C Orysa%3BCycD5%3B1%2C Orysa%3BCYCD5%3B1%2C OsCYCD5%3B2;Oryzabase Gene Name Synonym(s)=D-type cyclin 5%3B1;Note=Cyclin D domain containing protein.;Transcript_evidence=AK064396 (DDBJ%2C Best hit),AK101602 (DDBJ%2C Best hit);ORF_evidence=Q2QMW1 (UniProt);GO=Cellular Component: nucleus (GO:0005634);InterPro=Cyclin%2C C-terminal (IPR004367),Cyclin%2C N-terminal (IPR006671),Cyclin-like (IPR013763);NIAS_FLcDNA=002-108-G07,J033051K11;Oryzabase=13269;TENOR=Os12t0588800-01
Chr12	irgsp1_rep	five_prime_UTR	24621954	24622059	.	-	.	Parent=Os12t0588800-01
Chr12	irgsp1_rep	CDS	24621627	24621953	.	-	0	Parent=Os12t0588800-01
Chr12	irgsp1_rep	CDS	24621440	24621526	.	-	0	Parent=Os12t0588800-01
Chr12	irgsp1_rep	CDS	24620999	24621332	.	-	0	Parent=Os12t0588800-01
Chr12	irgsp1_rep	CDS	24620719	24620855	.	-	2	Parent=Os12t0588800-01
Chr12	irgsp1_rep	CDS	24620207	24620419	.	-	0	Parent=Os12t0588800-01
Chr12	irgsp1_rep	three_prime_UTR	24619889	24620206	.	-	.	Parent=Os12t0588800-01
Chr12	irgsp1_rep	mRNA	24627878	24630949	.	-	.	ID=Os12t0588900-01;Name=Os12t0588900-01;Locus_id=Os12g0588900;RAP-DB Gene Symbol Synonym(s)=SLG1%2C RCTU2;RAP-DB Gene Name Synonym(s)=Slender Guy 1%2C cytosolic tRNA 2-thiolation protein 2;Note=Cytosolic tRNA 2-thiolation protein 2%2C High-temperature tolerance;Transcript_evidence=AK069966;ORF_evidence=Q2QMW0;GO=Biological Process: tRNA wobble uridine modification (GO:0002098),Biological Process: tRNA thio-modification (GO:0034227),Molecular Function: tRNA binding (GO:0000049);InterPro=Rossmann-like alpha/beta/alpha sandwich fold (IPR014729),Cytoplasmic tRNA 2-thiolation protein 2 (IPR019407);NIAS_FLcDNA=J023038A10;Manual Curation=October 30%2C 2020;Literature_PMID=33116138;TENOR=Os12t0588900-01;Subcellular location=nucleus (GO:0005634),cytoplasm (GO:0005737)
Chr12	irgsp1_rep	five_prime_UTR	24630914	24630949	.	-	.	Parent=Os12t0588900-01
Chr12	irgsp1_rep	CDS	24630600	24630913	.	-	0	Parent=Os12t0588900-01
Chr12	irgsp1_rep	CDS	24629916	24630264	.	-	1	Parent=Os12t0588900-01
Chr12	irgsp1_rep	CDS	24629736	24629822	.	-	0	Parent=Os12t0588900-01
Chr12	irgsp1_rep	CDS	24629502	24629623	.	-	0	Parent=Os12t0588900-01
Chr12	irgsp1_rep	CDS	24629352	24629430	.	-	1	Parent=Os12t0588900-01
Chr12	irgsp1_rep	CDS	24628813	24629207	.	-	0	Parent=Os12t0588900-01
Chr12	irgsp1_rep	CDS	24628520	24628568	.	-	1	Parent=Os12t0588900-01
Chr12	irgsp1_rep	three_prime_UTR	24628489	24628519	.	-	.	Parent=Os12t0588900-01
Chr12	irgsp1_rep	three_prime_UTR	24627878	24628330	.	-	.	Parent=Os12t0588900-01
Chr12	irgsp1_rep	mRNA	24627827	24629074	.	-	.	ID=Os12t0588900-02;Name=Os12t0588900-02;Locus_id=Os12g0588900;Note=Similar to Cytoplasmic tRNA 2-thiolation protein 2.;Transcript_evidence=AK058919 (DDBJ%2C Best hit);ORF_evidence=Q2QMW0 (UniProt);NIAS_FLcDNA=001-009-B07;Expression=AK058919;TENOR=Os12t0588900-02;KEGG=Os12t0588900-02
Chr12	irgsp1_rep	five_prime_UTR	24629073	24629074	.	-	.	Parent=Os12t0588900-02
Chr12	irgsp1_rep	CDS	24628813	24629072	.	-	0	Parent=Os12t0588900-02
Chr12	irgsp1_rep	CDS	24628520	24628568	.	-	1	Parent=Os12t0588900-02
Chr12	irgsp1_rep	three_prime_UTR	24628489	24628519	.	-	.	Parent=Os12t0588900-02
Chr12	irgsp1_rep	three_prime_UTR	24627827	24628330	.	-	.	Parent=Os12t0588900-02
Chr12	irgsp1_rep	mRNA	24632487	24633776	.	-	.	ID=Os12t0589000-00;Name=Os12t0589000-00;Locus_id=Os12g0589000;Oryzabase Gene Symbol Synonym(s)=OsbHLH130%2C bHLH130%2C OsRSL9%2C RSL9%2C DLN264%2C OsDLN264;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 130%2C ROOT HAIR DEFECTIVE-SIX LIKE 9%2C DLN repressor 264%2C DLN motif protein 264;Note=Similar to Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QMV9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355);InterPro=Helix-loop-helix DNA-binding (IPR011598),Basic helix-loop-helix leucine zipper transcription factor (IPR024097),Basic helix-loop-helix leucine zipper transcription factor%2C plant (IPR024102);Oryzabase=15408;TENOR=Os12t0589000-00
Chr12	irgsp1_rep	CDS	24633300	24633776	.	-	0	Parent=Os12t0589000-00
Chr12	irgsp1_rep	CDS	24632980	24633198	.	-	0	Parent=Os12t0589000-00
Chr12	irgsp1_rep	CDS	24632823	24632888	.	-	0	Parent=Os12t0589000-00
Chr12	irgsp1_rep	CDS	24632660	24632725	.	-	0	Parent=Os12t0589000-00
Chr12	irgsp1_rep	CDS	24632487	24632573	.	-	0	Parent=Os12t0589000-00
Chr12	irgsp1_rep	mRNA	24637078	24639791	.	-	.	ID=Os12t0589100-01;Name=Os12t0589100-01;Locus_id=Os12g0589100;CGSNL Gene Symbol=APT1;CGSNL Gene Name=ADENINE PHOSPHORIBOSYLTRANSFERASE 1;Oryzabase Gene Symbol Synonym(s)=OsAPT1%2C APRT;Oryzabase Gene Name Synonym(s)=Adenine phosphoribosyltransferase 1;Note=Similar to Adenine phosphoribosyltransferase.;Transcript_evidence=AK104808 (DDBJ%2C Best hit),AK073627 (DDBJ%2C Best hit),AK104107 (DDBJ%2C Best hit);ORF_evidence=B6T920 (UniProt);GO=Biological Process: adenine salvage (GO:0006168),Biological Process: nucleoside metabolic process (GO:0009116),Cellular Component: cytoplasm (GO:0005737),Molecular Function: adenine phosphoribosyltransferase activity (GO:0003999);InterPro=Phosphoribosyltransferase (IPR000836),Adenine phosphoribosyl transferase (IPR005764);NIAS_FLcDNA=001-040-E09,J033051K07,006-202-E08;Oryzabase=11132;Expression=AK104808;TENOR=Os12t0589100-01;KEGG=Os12t0589100-01 (EC:2.4.2.7)
Chr12	irgsp1_rep	five_prime_UTR	24639787	24639791	.	-	.	Parent=Os12t0589100-01
Chr12	irgsp1_rep	CDS	24639531	24639786	.	-	0	Parent=Os12t0589100-01
Chr12	irgsp1_rep	CDS	24638864	24638974	.	-	2	Parent=Os12t0589100-01
Chr12	irgsp1_rep	CDS	24638626	24638718	.	-	2	Parent=Os12t0589100-01
Chr12	irgsp1_rep	CDS	24638371	24638520	.	-	2	Parent=Os12t0589100-01
Chr12	irgsp1_rep	CDS	24637885	24637943	.	-	2	Parent=Os12t0589100-01
Chr12	irgsp1_rep	CDS	24637343	24637396	.	-	0	Parent=Os12t0589100-01
Chr12	irgsp1_rep	three_prime_UTR	24637078	24637342	.	-	.	Parent=Os12t0589100-01
Chr12	irgsp1_rep	mRNA	24646431	24649269	.	+	.	ID=Os12t0589400-01;Name=Os12t0589400-01;Locus_id=Os12g0589400;CGSNL Gene Symbol=HSA1A;CGSNL Gene Name=F2 STERILITY-1;Oryzabase Gene Symbol Synonym(s)=hsa1(t)%2C s(t)%2C hst49;Oryzabase Gene Name Synonym(s)=F2 sterility-1(t);Note=Domain of unknown function DUF1618 domain containing protein.;Transcript_evidence=AK119349 (DDBJ%2C Best hit);ORF_evidence=A3CIY8 (UniProt);InterPro=Domain of unknown function DUF1618 (IPR011676);NIAS_FLcDNA=001-131-E11;Oryzabase=2170;Expression=AK119349;TENOR=Os12t0589400-01;KEGG=Os12t0589400-01
Chr12	irgsp1_rep	five_prime_UTR	24646431	24646491	.	+	.	Parent=Os12t0589400-01
Chr12	irgsp1_rep	CDS	24646492	24647925	.	+	0	Parent=Os12t0589400-01
Chr12	irgsp1_rep	three_prime_UTR	24647926	24649269	.	+	.	Parent=Os12t0589400-01
Chr12	irgsp1_rep	mRNA	24670685	24671065	.	+	.	ID=Os12t0589898-00;Name=Os12t0589898-00;Locus_id=Os12g0589898;Note=Similar to 2-isopropylmalate synthase B.;Transcript_evidence=BT084676 (DDBJ);ORF_evidence=B6SWN1 (UniProt);GO=Biological Process: leucine biosynthetic process (GO:0009098),Molecular Function: 2-isopropylmalate synthase activity (GO:0003852);InterPro=2-isopropylmalate synthase LeuA%2C allosteric (dimerisation) domain (IPR013709);TENOR=Os12t0589898-00
Chr12	irgsp1_rep	CDS	24670685	24670782	.	+	0	Parent=Os12t0589898-00
Chr12	irgsp1_rep	CDS	24670909	24671008	.	+	1	Parent=Os12t0589898-00
Chr12	irgsp1_rep	three_prime_UTR	24671009	24671065	.	+	.	Parent=Os12t0589898-00
Chr12	irgsp1_rep	mRNA	24687073	24687559	.	-	.	ID=Os12t0590066-00;Name=Os12t0590066-00;Locus_id=Os12g0590066;Note=Hypothetical conserved gene.;Transcript_evidence=BT017146 (DDBJ);ORF_evidence=NP_001053814.1 (RefSeq);TENOR=Os12t0590066-00;KEGG=Os12t0590066-00
Chr12	irgsp1_rep	five_prime_UTR	24687361	24687559	.	-	.	Parent=Os12t0590066-00
Chr12	irgsp1_rep	CDS	24687073	24687360	.	-	0	Parent=Os12t0590066-00
Chr12	irgsp1_rep	mRNA	24697916	24700773	.	-	.	ID=Os12t0590400-01;Name=Os12t0590400-01;Locus_id=Os12g0590400;Note=Conserved hypothetical protein.;Transcript_evidence=AK070028 (DDBJ%2C Best hit);ORF_evidence=B8BMS5 (UniProt);NIAS_FLcDNA=J023034G13;Expression=AK070028;TENOR=Os12t0590400-01;KEGG=Os12t0590400-01
Chr12	irgsp1_rep	five_prime_UTR	24700713	24700773	.	-	.	Parent=Os12t0590400-01
Chr12	irgsp1_rep	CDS	24700230	24700712	.	-	0	Parent=Os12t0590400-01
Chr12	irgsp1_rep	three_prime_UTR	24699314	24700229	.	-	.	Parent=Os12t0590400-01
Chr12	irgsp1_rep	three_prime_UTR	24698542	24698604	.	-	.	Parent=Os12t0590400-01
Chr12	irgsp1_rep	three_prime_UTR	24698367	24698435	.	-	.	Parent=Os12t0590400-01
Chr12	irgsp1_rep	three_prime_UTR	24697916	24698274	.	-	.	Parent=Os12t0590400-01
Chr12	irgsp1_rep	mRNA	24703607	24716073	.	-	.	ID=Os12t0590500-00;Name=Os12t0590500-00;Locus_id=Os12g0590500;Note=Similar to Kinesin motor domain containing protein%2C expressed.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QMU6 (UniProt);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752),Kinesin%2C motor region%2C conserved site (IPR019821),Kinesin-like%2C KLP2 (IPR024658);TENOR=Os12t0590500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	24715891	24716073	.	-	0	Parent=Os12t0590500-00
Chr12	irgsp1_rep	CDS	24715389	24715544	.	-	0	Parent=Os12t0590500-00
Chr12	irgsp1_rep	CDS	24715225	24715308	.	-	0	Parent=Os12t0590500-00
Chr12	irgsp1_rep	CDS	24715027	24715146	.	-	0	Parent=Os12t0590500-00
Chr12	irgsp1_rep	CDS	24714778	24714891	.	-	0	Parent=Os12t0590500-00
Chr12	irgsp1_rep	CDS	24714588	24714680	.	-	0	Parent=Os12t0590500-00
Chr12	irgsp1_rep	CDS	24714329	24714489	.	-	0	Parent=Os12t0590500-00
Chr12	irgsp1_rep	CDS	24714172	24714246	.	-	1	Parent=Os12t0590500-00
Chr12	irgsp1_rep	CDS	24713985	24714072	.	-	1	Parent=Os12t0590500-00
Chr12	irgsp1_rep	CDS	24713845	24713903	.	-	0	Parent=Os12t0590500-00
Chr12	irgsp1_rep	CDS	24713699	24713762	.	-	1	Parent=Os12t0590500-00
Chr12	irgsp1_rep	CDS	24713549	24713614	.	-	0	Parent=Os12t0590500-00
Chr12	irgsp1_rep	CDS	24713288	24713470	.	-	0	Parent=Os12t0590500-00
Chr12	irgsp1_rep	CDS	24712588	24712692	.	-	0	Parent=Os12t0590500-00
Chr12	irgsp1_rep	CDS	24712272	24712507	.	-	0	Parent=Os12t0590500-00
Chr12	irgsp1_rep	CDS	24712134	24712203	.	-	1	Parent=Os12t0590500-00
Chr12	irgsp1_rep	CDS	24711987	24712052	.	-	0	Parent=Os12t0590500-00
Chr12	irgsp1_rep	CDS	24711706	24711785	.	-	0	Parent=Os12t0590500-00
Chr12	irgsp1_rep	CDS	24711539	24711614	.	-	1	Parent=Os12t0590500-00
Chr12	irgsp1_rep	CDS	24709822	24711411	.	-	0	Parent=Os12t0590500-00
Chr12	irgsp1_rep	CDS	24709330	24709668	.	-	0	Parent=Os12t0590500-00
Chr12	irgsp1_rep	CDS	24706307	24708652	.	-	0	Parent=Os12t0590500-00
Chr12	irgsp1_rep	CDS	24706107	24706214	.	-	0	Parent=Os12t0590500-00
Chr12	irgsp1_rep	CDS	24705851	24706011	.	-	0	Parent=Os12t0590500-00
Chr12	irgsp1_rep	CDS	24705672	24705759	.	-	1	Parent=Os12t0590500-00
Chr12	irgsp1_rep	CDS	24705477	24705551	.	-	0	Parent=Os12t0590500-00
Chr12	irgsp1_rep	CDS	24705137	24705370	.	-	0	Parent=Os12t0590500-00
Chr12	irgsp1_rep	CDS	24704785	24704856	.	-	0	Parent=Os12t0590500-00
Chr12	irgsp1_rep	CDS	24704655	24704716	.	-	0	Parent=Os12t0590500-00
Chr12	irgsp1_rep	CDS	24704448	24704559	.	-	1	Parent=Os12t0590500-00
Chr12	irgsp1_rep	CDS	24704274	24704372	.	-	0	Parent=Os12t0590500-00
Chr12	irgsp1_rep	CDS	24704002	24704172	.	-	0	Parent=Os12t0590500-00
Chr12	irgsp1_rep	CDS	24703857	24703922	.	-	0	Parent=Os12t0590500-00
Chr12	irgsp1_rep	CDS	24703607	24703759	.	-	0	Parent=Os12t0590500-00
Chr12	irgsp1_rep	mRNA	24722843	24723389	.	-	.	ID=Os12t0590550-00;Name=Os12t0590550-00;Locus_id=Os12g0590550;Note=Hypothetical gene.;Transcript_evidence=AK062999 (DDBJ%2C Secondary hit);ORF_evidence=longestORF;Expression=AK062999;TENOR=Os12t0590550-00;KEGG=Os12t0590550-00
Chr12	irgsp1_rep	five_prime_UTR	24723353	24723389	.	-	.	Parent=Os12t0590550-00
Chr12	irgsp1_rep	CDS	24722990	24723352	.	-	0	Parent=Os12t0590550-00
Chr12	irgsp1_rep	three_prime_UTR	24722843	24722989	.	-	.	Parent=Os12t0590550-00
Chr12	irgsp1_rep	mRNA	24724344	24724451	.	-	.	ID=Os12t0590700-00;Name=Os12t0590700-00;Locus_id=Os12g0590700;CGSNL Gene Symbol=DOF30;CGSNL Gene Name=DNA BINDING WITH ONE FINGER 30;Oryzabase Gene Symbol Synonym(s)=OsDof30%2C Dof30%2C OsDof-30;Oryzabase Gene Name Synonym(s)=Dof zinc factor 30%2C Dof transcription factor 30;Note=Similar to Dof domain%2C zinc finger family protein.;Transcript_evidence=GQ183543 (DDBJ%2C Best hit);ORF_evidence=Q2QMU5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C Dof-type (IPR003851);Oryzabase=8818;TENOR=Os12t0590700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	24724450	24724451	.	-	.	Parent=Os12t0590700-00
Chr12	irgsp1_rep	CDS	24724344	24724449	.	-	0	Parent=Os12t0590700-00
Chr12	irgsp1_rep	mRNA	24742000	24745782	.	+	.	ID=Os12t0590900-01;Name=Os12t0590900-01;Locus_id=Os12g0590900;Note=Pyridoxal phosphate-dependent transferase%2C major region domain containing protein.;Transcript_evidence=AK243370 (DDBJ%2C Best hit);ORF_evidence=NP_179933.2 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824),Molecular Function: pyridoxal phosphate binding (GO:0030170);InterPro=Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 1 (IPR015421),Pyridoxal phosphate-dependent transferase%2C major region%2C subdomain 2 (IPR015422),Pyridoxal phosphate-dependent transferase%2C major domain (IPR015424);NIAS_FLcDNA=J100062H13;TENOR=Os12t0590900-01;KEGG=Os12t0590900-01
Chr12	irgsp1_rep	five_prime_UTR	24742000	24742731	.	+	.	Parent=Os12t0590900-01
Chr12	irgsp1_rep	CDS	24742732	24745458	.	+	0	Parent=Os12t0590900-01
Chr12	irgsp1_rep	three_prime_UTR	24745459	24745782	.	+	.	Parent=Os12t0590900-01
Chr12	irgsp1_rep	mRNA	24742069	24746544	.	-	.	ID=Os12t0591101-01;Name=Os12t0591101-01;Locus_id=Os12g0591101;Note=Hypothetical gene.;Transcript_evidence=AK287693 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065128I10;TENOR=Os12t0591101-01;KEGG=Os12t0591101-01
Chr12	irgsp1_rep	five_prime_UTR	24746164	24746544	.	-	.	Parent=Os12t0591101-01
Chr12	irgsp1_rep	five_prime_UTR	24743743	24745496	.	-	.	Parent=Os12t0591101-01
Chr12	irgsp1_rep	CDS	24742744	24743742	.	-	0	Parent=Os12t0591101-01
Chr12	irgsp1_rep	three_prime_UTR	24742069	24742743	.	-	.	Parent=Os12t0591101-01
Chr12	irgsp1_rep	mRNA	24777228	24778938	.	+	.	ID=Os12t0591300-01;Name=Os12t0591300-01;Locus_id=Os12g0591300;Note=Similar to B3 domain-containing protein LOC_Os12g40080.;Transcript_evidence=AK241993 (DDBJ%2C Best hit);ORF_evidence=B8BMS8 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=J075099J10;TENOR=Os12t0591300-01;KEGG=Os12t0591300-01
Chr12	irgsp1_rep	five_prime_UTR	24777228	24777243	.	+	.	Parent=Os12t0591300-01
Chr12	irgsp1_rep	CDS	24777244	24777253	.	+	0	Parent=Os12t0591300-01
Chr12	irgsp1_rep	CDS	24777341	24777546	.	+	2	Parent=Os12t0591300-01
Chr12	irgsp1_rep	CDS	24777757	24778024	.	+	0	Parent=Os12t0591300-01
Chr12	irgsp1_rep	CDS	24778153	24778340	.	+	2	Parent=Os12t0591300-01
Chr12	irgsp1_rep	CDS	24778489	24778752	.	+	0	Parent=Os12t0591300-01
Chr12	irgsp1_rep	three_prime_UTR	24778753	24778938	.	+	.	Parent=Os12t0591300-01
Chr12	irgsp1_rep	mRNA	24780961	24786307	.	+	.	ID=Os12t0591500-00;Name=Os12t0591500-00;Locus_id=Os12g0591500;Note=Transcriptional factor B3 domain containing protein.;Transcript_evidence=AK357106 (DDBJ);ORF_evidence=Q2QMT6 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);TENOR=Os12t0591500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	24780961	24781077	.	+	0	Parent=Os12t0591500-00
Chr12	irgsp1_rep	CDS	24781330	24781753	.	+	0	Parent=Os12t0591500-00
Chr12	irgsp1_rep	CDS	24781831	24782042	.	+	2	Parent=Os12t0591500-00
Chr12	irgsp1_rep	CDS	24782226	24782493	.	+	0	Parent=Os12t0591500-00
Chr12	irgsp1_rep	CDS	24785604	24785626	.	+	2	Parent=Os12t0591500-00
Chr12	irgsp1_rep	three_prime_UTR	24785627	24785855	.	+	.	Parent=Os12t0591500-00
Chr12	irgsp1_rep	three_prime_UTR	24786024	24786307	.	+	.	Parent=Os12t0591500-00
Chr12	irgsp1_rep	mRNA	24793181	24796415	.	-	.	ID=Os12t0591600-01;Name=Os12t0591600-01;Locus_id=Os12g0591600;Note=Conserved hypothetical protein.;Transcript_evidence=AK109727 (DDBJ%2C Best hit);ORF_evidence=Q2QMT4 (UniProt);NIAS_FLcDNA=002-146-B09;Expression=AK109727;TENOR=Os12t0591600-01;KEGG=Os12t0591600-01
Chr12	irgsp1_rep	five_prime_UTR	24796000	24796415	.	-	.	Parent=Os12t0591600-01
Chr12	irgsp1_rep	five_prime_UTR	24794877	24795682	.	-	.	Parent=Os12t0591600-01
Chr12	irgsp1_rep	CDS	24794730	24794876	.	-	0	Parent=Os12t0591600-01
Chr12	irgsp1_rep	CDS	24793291	24793746	.	-	0	Parent=Os12t0591600-01
Chr12	irgsp1_rep	three_prime_UTR	24793181	24793290	.	-	.	Parent=Os12t0591600-01
Chr12	irgsp1_rep	mRNA	24815283	24817377	.	+	.	ID=Os12t0592200-01;Name=Os12t0592200-01;Locus_id=Os12g0592200;Note=Hypothetical conserved gene.;Transcript_evidence=AK287585 (DDBJ%2C Best hit);ORF_evidence=NP_001067171.2 (RefSeq);NIAS_FLcDNA=J065045E09;TENOR=Os12t0592200-01;KEGG=Os12t0592200-01
Chr12	irgsp1_rep	five_prime_UTR	24815283	24815319	.	+	.	Parent=Os12t0592200-01
Chr12	irgsp1_rep	CDS	24815320	24815486	.	+	0	Parent=Os12t0592200-01
Chr12	irgsp1_rep	CDS	24815587	24815693	.	+	1	Parent=Os12t0592200-01
Chr12	irgsp1_rep	CDS	24816091	24816113	.	+	2	Parent=Os12t0592200-01
Chr12	irgsp1_rep	three_prime_UTR	24816114	24816160	.	+	.	Parent=Os12t0592200-01
Chr12	irgsp1_rep	three_prime_UTR	24817084	24817377	.	+	.	Parent=Os12t0592200-01
Chr12	irgsp1_rep	mRNA	24818070	24820116	.	-	.	ID=Os12t0592300-00;Name=Os12t0592300-00;Locus_id=Os12g0592300;Note=Transcriptional factor B3 domain containing protein.;Transcript_evidence=BT069938 (DDBJ);ORF_evidence=Q2QMT2 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=Transcriptional factor B3 (IPR003340),DNA-binding pseudobarrel domain (IPR015300);TENOR=Os12t0592300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	24820047	24820116	.	-	.	Parent=Os12t0592300-00
Chr12	irgsp1_rep	CDS	24819927	24820046	.	-	0	Parent=Os12t0592300-00
Chr12	irgsp1_rep	CDS	24818894	24819326	.	-	0	Parent=Os12t0592300-00
Chr12	irgsp1_rep	CDS	24818742	24818749	.	-	2	Parent=Os12t0592300-00
Chr12	irgsp1_rep	three_prime_UTR	24818507	24818741	.	-	.	Parent=Os12t0592300-00
Chr12	irgsp1_rep	three_prime_UTR	24818070	24818335	.	-	.	Parent=Os12t0592300-00
Chr12	irgsp1_rep	mRNA	24821104	24822507	.	+	.	ID=Os12t0592400-00;Name=Os12t0592400-00;Locus_id=Os12g0592400;Note=Similar to Adenine phosphoribosyltransferase 1.;Transcript_evidence=ab initio prediction;ORF_evidence=B6T920 (UniProt);GO=Biological Process: adenine salvage (GO:0006168),Biological Process: nucleoside metabolic process (GO:0009116),Cellular Component: cytoplasm (GO:0005737),Molecular Function: adenine phosphoribosyltransferase activity (GO:0003999);InterPro=Phosphoribosyltransferase (IPR000836),Adenine phosphoribosyl transferase (IPR005764);TENOR=Os12t0592400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	24821104	24821203	.	+	0	Parent=Os12t0592400-00
Chr12	irgsp1_rep	CDS	24821339	24821449	.	+	2	Parent=Os12t0592400-00
Chr12	irgsp1_rep	CDS	24821705	24821797	.	+	2	Parent=Os12t0592400-00
Chr12	irgsp1_rep	CDS	24821911	24822060	.	+	2	Parent=Os12t0592400-00
Chr12	irgsp1_rep	CDS	24822307	24822365	.	+	2	Parent=Os12t0592400-00
Chr12	irgsp1_rep	CDS	24822454	24822507	.	+	0	Parent=Os12t0592400-00
Chr12	irgsp1_rep	mRNA	24823278	24824513	.	+	.	ID=Os12t0592500-01;Name=Os12t0592500-01;Locus_id=Os12g0592500;Oryzabase Gene Symbol Synonym(s)=OsFbox671%2C Os_F0524;Oryzabase Gene Name Synonym(s)=F-box protein 671;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK073068 (DDBJ%2C Best hit);ORF_evidence=A2ZM97 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);NIAS_FLcDNA=J033020K05;Oryzabase=17431;Expression=AK073068;TENOR=Os12t0592500-01;KEGG=Os12t0592500-01
Chr12	irgsp1_rep	five_prime_UTR	24823278	24823405	.	+	.	Parent=Os12t0592500-01
Chr12	irgsp1_rep	CDS	24823406	24824008	.	+	0	Parent=Os12t0592500-01
Chr12	irgsp1_rep	three_prime_UTR	24824009	24824513	.	+	.	Parent=Os12t0592500-01
Chr12	irgsp1_rep	mRNA	24869115	24870044	.	+	.	ID=Os12t0592832-00;Name=Os12t0592832-00;Locus_id=Os12g0592832;Note=Hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NONE;TENOR=Os12t0592832-00
Chr12	irgsp1_rep	CDS	24869115	24869241	.	+	0	Parent=Os12t0592832-00
Chr12	irgsp1_rep	CDS	24869875	24870044	.	+	2	Parent=Os12t0592832-00
Chr12	irgsp1_rep	mRNA	24871763	24872331	.	+	.	ID=Os12t0592900-02;Name=Os12t0592900-02;Locus_id=Os12g0592900;Note=Conserved hypothetical protein.;Transcript_evidence=AK120039 (DDBJ%2C Best hit),AK064058 (DDBJ%2C Best hit);ORF_evidence=A2ZMA1 (UniProt);NIAS_FLcDNA=002-188-E08,001-125-F07;Expression=AK120039;TENOR=Os12t0592900-02;KEGG=Os12t0592900-02
Chr12	irgsp1_rep	five_prime_UTR	24871763	24871827	.	+	.	Parent=Os12t0592900-02
Chr12	irgsp1_rep	CDS	24871828	24872121	.	+	0	Parent=Os12t0592900-02
Chr12	irgsp1_rep	three_prime_UTR	24872122	24872331	.	+	.	Parent=Os12t0592900-02
Chr12	irgsp1_rep	mRNA	24872489	24877348	.	-	.	ID=Os12t0593000-01;Name=Os12t0593000-01;Locus_id=Os12g0593000;CGSNL Gene Symbol=PXLG3;CGSNL Gene Name=PUTATIVE EXTRA-LARGE G PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsPXLG3;Oryzabase Gene Name Synonym(s)=putative extra-large G protein 3;Note=Similar to Extra-large G-protein.;Transcript_evidence=AK067863 (DDBJ%2C Best hit);ORF_evidence=NP_565553.1 (RefSeq);GO=Biological Process: signal transduction (GO:0007165),Biological Process: G-protein coupled receptor protein signaling pathway (GO:0007186),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: guanyl nucleotide binding (GO:0019001);InterPro=Guanine nucleotide binding protein (G-protein)%2C alpha subunit (IPR001019),G protein alpha subunit%2C helical insertion (IPR011025);NIAS_FLcDNA=J013128N09;Oryzabase=23517;Expression=AK067863;TENOR=Os12t0593000-01;KEGG=Os12t0593000-01
Chr12	irgsp1_rep	five_prime_UTR	24877210	24877348	.	-	.	Parent=Os12t0593000-01
Chr12	irgsp1_rep	CDS	24877012	24877209	.	-	0	Parent=Os12t0593000-01
Chr12	irgsp1_rep	CDS	24876130	24876381	.	-	0	Parent=Os12t0593000-01
Chr12	irgsp1_rep	CDS	24875006	24875143	.	-	0	Parent=Os12t0593000-01
Chr12	irgsp1_rep	CDS	24874832	24874936	.	-	0	Parent=Os12t0593000-01
Chr12	irgsp1_rep	CDS	24874569	24874745	.	-	0	Parent=Os12t0593000-01
Chr12	irgsp1_rep	CDS	24874197	24874374	.	-	0	Parent=Os12t0593000-01
Chr12	irgsp1_rep	CDS	24873776	24874023	.	-	2	Parent=Os12t0593000-01
Chr12	irgsp1_rep	CDS	24873457	24873623	.	-	0	Parent=Os12t0593000-01
Chr12	irgsp1_rep	CDS	24872734	24873331	.	-	1	Parent=Os12t0593000-01
Chr12	irgsp1_rep	three_prime_UTR	24872489	24872733	.	-	.	Parent=Os12t0593000-01
Chr12	irgsp1_rep	mRNA	24872484	24873999	.	-	.	ID=Os12t0593000-02;Name=Os12t0593000-02;Locus_id=Os12g0593000;CGSNL Gene Symbol=PXLG3;CGSNL Gene Name=PUTATIVE EXTRA-LARGE G PROTEIN 3;Oryzabase Gene Symbol Synonym(s)=OsPXLG3;Oryzabase Gene Name Synonym(s)=putative extra-large G protein 3;Note=Similar to predicted protein.;Transcript_evidence=AK060570 (DDBJ%2C Best hit);ORF_evidence=NP_565553.1 (RefSeq);GO=Biological Process: signal transduction (GO:0007165),Biological Process: G-protein coupled receptor protein signaling pathway (GO:0007186),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: guanyl nucleotide binding (GO:0019001);InterPro=Guanine nucleotide binding protein (G-protein)%2C alpha subunit (IPR001019),G protein alpha subunit%2C helical insertion (IPR011025);NIAS_FLcDNA=001-023-C03;Oryzabase=23517;Expression=AK060570;TENOR=Os12t0593000-02;KEGG=Os12t0593000-02
Chr12	irgsp1_rep	five_prime_UTR	24873998	24873999	.	-	.	Parent=Os12t0593000-02
Chr12	irgsp1_rep	CDS	24873776	24873997	.	-	0	Parent=Os12t0593000-02
Chr12	irgsp1_rep	CDS	24873457	24873623	.	-	0	Parent=Os12t0593000-02
Chr12	irgsp1_rep	CDS	24872734	24873331	.	-	1	Parent=Os12t0593000-02
Chr12	irgsp1_rep	three_prime_UTR	24872484	24872733	.	-	.	Parent=Os12t0593000-02
Chr12	irgsp1_rep	mRNA	24884081	24885580	.	-	.	ID=Os12t0593300-00;Name=Os12t0593300-00;Locus_id=Os12g0593300;Note=Hypothetical conserved gene.;Transcript_evidence=tplb0001g08 (Wheat FLcDNA);ORF_evidence=Q2QMS4 (UniProt);TENOR=Os12t0593300-00;KEGG=Os12t0593300-00
Chr12	irgsp1_rep	CDS	24884663	24885580	.	-	0	Parent=Os12t0593300-00
Chr12	irgsp1_rep	three_prime_UTR	24884081	24884662	.	-	.	Parent=Os12t0593300-00
Chr12	irgsp1_rep	mRNA	24887190	24887270	.	-	.	ID=Os12t0593650-00;Name=Os12t0593650-00;Locus_id=Os12g0593650;Note=Non-protein coding transcript.;Transcript_evidence=CT836151 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os12t0593650-00
Chr12	irgsp1_rep	exon	24887190	24887270	.	-	.	Parent=Os12t0593650-00
Chr12	irgsp1_rep	mRNA	24915108	24917305	.	+	.	ID=Os12t0594000-00;Name=Os12t0594000-00;Locus_id=Os12g0594000;Oryzabase Gene Symbol Synonym(s)=OsWD40-198;Note=WD40 repeat-like domain containing protein.;Transcript_evidence=AK354406 (DDBJ);ORF_evidence=Q1EPE0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782),G-protein beta WD-40 repeat (IPR020472);Oryzabase=10879;TENOR=Os12t0594000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	24915108	24916907	.	+	0	Parent=Os12t0594000-00
Chr12	irgsp1_rep	three_prime_UTR	24916908	24917305	.	+	.	Parent=Os12t0594000-00
Chr12	irgsp1_rep	mRNA	24926341	24930364	.	+	.	ID=Os12t0594200-00;Name=Os12t0594200-00;Locus_id=Os12g0594200;Note=Hypothetical conserved gene.;Transcript_evidence=EU942864 (DDBJ);ORF_evidence=NP_001067177.2 (RefSeq);TENOR=Os12t0594200-00;KEGG=Os12t0594200-00
Chr12	irgsp1_rep	CDS	24926341	24928568	.	+	0	Parent=Os12t0594200-00
Chr12	irgsp1_rep	CDS	24928912	24929026	.	+	1	Parent=Os12t0594200-00
Chr12	irgsp1_rep	CDS	24929519	24930364	.	+	0	Parent=Os12t0594200-00
Chr12	irgsp1_rep	mRNA	24942511	24943393	.	-	.	ID=Os12t0594201-00;Name=Os12t0594201-00;Locus_id=Os12g0594201;Note=Hypothetical gene.;Transcript_evidence=CU406459 (DDBJ%2C Best hit);ORF_evidence=longestORF;TENOR=Os12t0594201-00;KEGG=Os12t0594201-00
Chr12	irgsp1_rep	five_prime_UTR	24943264	24943393	.	-	.	Parent=Os12t0594201-00
Chr12	irgsp1_rep	CDS	24943000	24943263	.	-	0	Parent=Os12t0594201-00
Chr12	irgsp1_rep	three_prime_UTR	24942511	24942999	.	-	.	Parent=Os12t0594201-00
Chr12	irgsp1_rep	mRNA	24945820	24950240	.	+	.	ID=Os12t0594300-00;Name=Os12t0594300-00;Locus_id=Os12g0594300;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9GE20 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Phox/Bem1p (IPR000270),Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os12t0594300-00;KEGG=Os12t0594300-00
Chr12	irgsp1_rep	CDS	24945820	24945912	.	+	0	Parent=Os12t0594300-00
Chr12	irgsp1_rep	CDS	24945986	24948364	.	+	0	Parent=Os12t0594300-00
Chr12	irgsp1_rep	CDS	24948451	24948534	.	+	0	Parent=Os12t0594300-00
Chr12	irgsp1_rep	CDS	24948669	24948821	.	+	0	Parent=Os12t0594300-00
Chr12	irgsp1_rep	CDS	24948954	24948992	.	+	0	Parent=Os12t0594300-00
Chr12	irgsp1_rep	CDS	24949051	24949214	.	+	0	Parent=Os12t0594300-00
Chr12	irgsp1_rep	CDS	24949288	24949435	.	+	1	Parent=Os12t0594300-00
Chr12	irgsp1_rep	CDS	24949582	24949704	.	+	0	Parent=Os12t0594300-00
Chr12	irgsp1_rep	CDS	24949782	24949869	.	+	0	Parent=Os12t0594300-00
Chr12	irgsp1_rep	CDS	24950059	24950240	.	+	2	Parent=Os12t0594300-00
Chr12	irgsp1_rep	mRNA	24957948	24961215	.	+	.	ID=Os12t0594600-01;Name=Os12t0594600-01;Locus_id=Os12g0594600;Note=BTB/POZ fold domain containing protein.;Transcript_evidence=AK101239 (DDBJ%2C Best hit);ORF_evidence=A2ZMA8 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);InterPro=SKP1 component (IPR001232),BTB/POZ fold (IPR011333),SKP1 component%2C dimerisation (IPR016072);NIAS_FLcDNA=J033031N08;Expression=AK101239;TENOR=Os12t0594600-01;KEGG=Os12t0594600-01
Chr12	irgsp1_rep	five_prime_UTR	24957948	24958038	.	+	.	Parent=Os12t0594600-01
Chr12	irgsp1_rep	CDS	24958039	24958329	.	+	0	Parent=Os12t0594600-01
Chr12	irgsp1_rep	CDS	24960676	24960858	.	+	0	Parent=Os12t0594600-01
Chr12	irgsp1_rep	three_prime_UTR	24960859	24961215	.	+	.	Parent=Os12t0594600-01
Chr12	irgsp1_rep	mRNA	24961949	24967283	.	+	.	ID=Os12t0594700-00;Name=Os12t0594700-00;Locus_id=Os12g0594700;Oryzabase Gene Symbol Synonym(s)=OsFbox672%2C Os_F0707%2C Os_F0732;Oryzabase Gene Name Synonym(s)=F-box protein 672;Note=Similar to F-box domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QMR2 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);Oryzabase=17432,17465;TENOR=Os12t0594700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	24961949	24963277	.	+	0	Parent=Os12t0594700-00
Chr12	irgsp1_rep	CDS	24963384	24963530	.	+	0	Parent=Os12t0594700-00
Chr12	irgsp1_rep	CDS	24965518	24966648	.	+	0	Parent=Os12t0594700-00
Chr12	irgsp1_rep	CDS	24966748	24966894	.	+	0	Parent=Os12t0594700-00
Chr12	irgsp1_rep	CDS	24967203	24967283	.	+	0	Parent=Os12t0594700-00
Chr12	irgsp1_rep	mRNA	24972601	24972857	.	+	.	ID=Os12t0594900-00;Name=Os12t0594900-00;Locus_id=Os12g0594900;Note=Non-protein coding transcript.;Transcript_evidence=CT835584 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os12t0594900-00
Chr12	irgsp1_rep	exon	24972601	24972857	.	+	.	Parent=Os12t0594900-00
Chr12	irgsp1_rep	mRNA	24974393	24975143	.	+	.	ID=Os12t0594950-01;Name=Os12t0594950-01;Locus_id=Os12g0594950;Note=Hypothetical conserved gene.;Transcript_evidence=AK287432 (DDBJ%2C Best hit);ORF_evidence=NP_001177039.1 (RefSeq);NIAS_FLcDNA=J043011E19;TENOR=Os12t0594950-01;KEGG=Os12t0594950-01
Chr12	irgsp1_rep	five_prime_UTR	24974393	24974465	.	+	.	Parent=Os12t0594950-01
Chr12	irgsp1_rep	CDS	24974466	24974774	.	+	0	Parent=Os12t0594950-01
Chr12	irgsp1_rep	three_prime_UTR	24974775	24975143	.	+	.	Parent=Os12t0594950-01
Chr12	irgsp1_rep	mRNA	24975808	24980997	.	-	.	ID=Os12t0595000-01;Name=Os12t0595000-01;Locus_id=Os12g0595000;Note=Similar to EXS%2C C-terminal.;Transcript_evidence=AK065252 (DDBJ%2C Best hit);ORF_evidence=NP_001151325.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=EXS%2C C-terminal (IPR004342);NIAS_FLcDNA=J013002J09;TENOR=Os12t0595000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	24980646	24980997	.	-	.	Parent=Os12t0595000-01
Chr12	irgsp1_rep	five_prime_UTR	24980429	24980496	.	-	.	Parent=Os12t0595000-01
Chr12	irgsp1_rep	CDS	24980363	24980428	.	-	0	Parent=Os12t0595000-01
Chr12	irgsp1_rep	CDS	24979458	24979496	.	-	0	Parent=Os12t0595000-01
Chr12	irgsp1_rep	CDS	24979272	24979364	.	-	0	Parent=Os12t0595000-01
Chr12	irgsp1_rep	CDS	24979039	24979155	.	-	0	Parent=Os12t0595000-01
Chr12	irgsp1_rep	CDS	24978573	24978668	.	-	0	Parent=Os12t0595000-01
Chr12	irgsp1_rep	CDS	24977773	24977886	.	-	0	Parent=Os12t0595000-01
Chr12	irgsp1_rep	CDS	24977545	24977598	.	-	0	Parent=Os12t0595000-01
Chr12	irgsp1_rep	CDS	24977216	24977263	.	-	0	Parent=Os12t0595000-01
Chr12	irgsp1_rep	CDS	24976874	24977024	.	-	0	Parent=Os12t0595000-01
Chr12	irgsp1_rep	CDS	24976589	24976754	.	-	2	Parent=Os12t0595000-01
Chr12	irgsp1_rep	CDS	24976431	24976500	.	-	1	Parent=Os12t0595000-01
Chr12	irgsp1_rep	CDS	24976094	24976348	.	-	0	Parent=Os12t0595000-01
Chr12	irgsp1_rep	three_prime_UTR	24975808	24976093	.	-	.	Parent=Os12t0595000-01
Chr12	irgsp1_rep	mRNA	24984480	24985970	.	-	.	ID=Os12t0595200-00;Name=Os12t0595200-00;Locus_id=Os12g0595200;Oryzabase Gene Symbol Synonym(s)=Os_F0776;Note=Similar to F-box domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QMQ8 (UniProt);Oryzabase=17569;TENOR=Os12t0595200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	24985401	24985970	.	-	0	Parent=Os12t0595200-00
Chr12	irgsp1_rep	CDS	24985165	24985311	.	-	0	Parent=Os12t0595200-00
Chr12	irgsp1_rep	CDS	24984480	24984842	.	-	0	Parent=Os12t0595200-00
Chr12	irgsp1_rep	mRNA	24994125	24996461	.	-	.	ID=Os12t0595300-01;Name=Os12t0595300-01;Locus_id=Os12g0595300;Oryzabase Gene Symbol Synonym(s)=OsFbox673%2C Os_F0735;Oryzabase Gene Name Synonym(s)=F-box protein 673;Note=Conserved hypothetical protein.;Transcript_evidence=AK106840 (DDBJ%2C Best hit);ORF_evidence=A3CJ25 (UniProt);NIAS_FLcDNA=002-116-H05;Oryzabase=17433;TENOR=Os12t0595300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	24996344	24996461	.	-	.	Parent=Os12t0595300-01
Chr12	irgsp1_rep	CDS	24995279	24996343	.	-	0	Parent=Os12t0595300-01
Chr12	irgsp1_rep	CDS	24995054	24995200	.	-	0	Parent=Os12t0595300-01
Chr12	irgsp1_rep	CDS	24994366	24994734	.	-	0	Parent=Os12t0595300-01
Chr12	irgsp1_rep	three_prime_UTR	24994125	24994365	.	-	.	Parent=Os12t0595300-01
Chr12	irgsp1_rep	mRNA	25002889	25003359	.	-	.	ID=Os12t0595500-00;Name=Os12t0595500-00;Locus_id=Os12g0595500;Note=Similar to cDNA%2C clone: J075189E02%2C full insert sequence.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001177041.1 (RefSeq);TENOR=Os12t0595500-00;KEGG=Os12t0595500-00
Chr12	irgsp1_rep	CDS	25002889	25003359	.	-	0	Parent=Os12t0595500-00
Chr12	irgsp1_rep	mRNA	25004455	25007073	.	-	.	ID=Os12t0595600-00;Name=Os12t0595600-00;Locus_id=Os12g0595600;Note=Hypothetical conserved gene.;Transcript_evidence=ab initio prediction;ORF_evidence=B9GE25 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);InterPro=SKP1 component (IPR001232),BTB/POZ fold (IPR011333),SKP1 component%2C dimerisation (IPR016072);TENOR=Os12t0595600-00;KEGG=Os12t0595600-00
Chr12	irgsp1_rep	CDS	25006762	25007073	.	-	0	Parent=Os12t0595600-00
Chr12	irgsp1_rep	CDS	25004455	25004637	.	-	0	Parent=Os12t0595600-00
Chr12	irgsp1_rep	mRNA	25015035	25026412	.	+	.	ID=Os12t0595800-01;Name=Os12t0595800-01;Locus_id=Os12g0595800;RAP-DB Gene Symbol Synonym(s)=OsWAKL21.3;RAP-DB Gene Name Synonym(s)=WALL-ASSOCIATED KINASE-LIKE 21;CGSNL Gene Symbol=WAKL21.2;CGSNL Gene Name=WALL-ASSOCIATED KINASE-LIKE 21;Oryzabase Gene Symbol Synonym(s)=OsWAKL21.2;Oryzabase Gene Name Synonym(s)=WALL-ASSOCIATED KINASE-LIKE21;Note=Similar to cDNA clone:J023098M23%2C full insert sequence.;Transcript_evidence=AK099661 (DDBJ%2C Best hit);ORF_evidence=B7EKS1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013066L14;Manual Curation=May 12%2C 2020;Literature_PMID=32354878;Oryzabase=23594;TENOR=Os12t0595800-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	25015035	25015083	.	+	.	Parent=Os12t0595800-01
Chr12	irgsp1_rep	CDS	25015084	25015960	.	+	0	Parent=Os12t0595800-01
Chr12	irgsp1_rep	CDS	25024114	25024155	.	+	2	Parent=Os12t0595800-01
Chr12	irgsp1_rep	CDS	25025024	25026261	.	+	2	Parent=Os12t0595800-01
Chr12	irgsp1_rep	three_prime_UTR	25026262	25026412	.	+	.	Parent=Os12t0595800-01
Chr12	irgsp1_rep	mRNA	25019015	25026459	.	+	.	ID=Os12t0595800-02;Name=Os12t0595800-02;Locus_id=Os12g0595800;CGSNL Gene Symbol=WAKL21.2;CGSNL Gene Name=WALL-ASSOCIATED KINASE-LIKE 21;Oryzabase Gene Symbol Synonym(s)=OsWAKL21.2;Oryzabase Gene Name Synonym(s)=WALL-ASSOCIATED KINASE-LIKE21;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=AK072425 (DDBJ%2C Best hit);ORF_evidence=Q2QMQ1 (UniProt);NIAS_FLcDNA=J023098M23;Oryzabase=23594;Expression=AK072425;TENOR=Os12t0595800-02;KEGG=Os12t0595800-02
Chr12	irgsp1_rep	five_prime_UTR	25019015	25019016	.	+	.	Parent=Os12t0595800-02
Chr12	irgsp1_rep	CDS	25019017	25019547	.	+	0	Parent=Os12t0595800-02
Chr12	irgsp1_rep	three_prime_UTR	25019548	25020032	.	+	.	Parent=Os12t0595800-02
Chr12	irgsp1_rep	three_prime_UTR	25024114	25024155	.	+	.	Parent=Os12t0595800-02
Chr12	irgsp1_rep	three_prime_UTR	25025024	25026459	.	+	.	Parent=Os12t0595800-02
Chr12	irgsp1_rep	mRNA	25019058	25026412	.	+	.	ID=Os12t0595800-03;Name=Os12t0595800-03;Locus_id=Os12g0595800;RAP-DB Gene Symbol Synonym(s)=OsWAKL21.1;RAP-DB Gene Name Synonym(s)=WALL-ASSOCIATED KINASE-LIKE 21;CGSNL Gene Symbol=WAKL21.2;CGSNL Gene Name=WALL-ASSOCIATED KINASE-LIKE 21;Oryzabase Gene Symbol Synonym(s)=OsWAKL21.2;Oryzabase Gene Name Synonym(s)=WALL-ASSOCIATED KINASE-LIKE21;Note=Similar to cDNA clone:J023098M23%2C full insert sequence.;Transcript_evidence=AK101874 (DDBJ%2C Best hit);ORF_evidence=B7EKS1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033070G15;Manual Curation=May 12%2C 2020;Literature_PMID=32354878;Oryzabase=23594;Expression=AK101874;TENOR=Os12t0595800-03
Chr12	irgsp1_rep	five_prime_UTR	25019058	25019125	.	+	.	Parent=Os12t0595800-03
Chr12	irgsp1_rep	CDS	25019126	25020032	.	+	0	Parent=Os12t0595800-03
Chr12	irgsp1_rep	CDS	25024114	25024155	.	+	2	Parent=Os12t0595800-03
Chr12	irgsp1_rep	CDS	25025024	25026261	.	+	2	Parent=Os12t0595800-03
Chr12	irgsp1_rep	three_prime_UTR	25026262	25026412	.	+	.	Parent=Os12t0595800-03
Chr12	irgsp1_rep	mRNA	25022000	25026429	.	+	.	ID=Os12t0595800-04;Name=Os12t0595800-04;Locus_id=Os12g0595800;RAP-DB Gene Symbol Synonym(s)=OsWAKL21.2;RAP-DB Gene Name Synonym(s)=WALL-ASSOCIATED KINASE-LIKE 21;Note=Receptor-like kinase%2C Activation of immune responses;Transcript_evidence=AK121185;ORF_evidence=Q2QMQ0;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: polysaccharide binding (GO:0030247);InterPro=Protein kinase-like domain superfamily (IPR011009),Wall-associated receptor kinase%2C galacturonan-binding domain (IPR025287),Protein kinase domain (IPR000719),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=J023084P22;Manual Curation=May 12%2C 2020;Literature_PMID=32354878;Expression=AK121185;TENOR=Os12t0595800-04;Subcellular location=cell membrane (GO:0005886)
Chr12	irgsp1_rep	five_prime_UTR	25022000	25022046	.	+	.	Parent=Os12t0595800-04
Chr12	irgsp1_rep	CDS	25022047	25022944	.	+	0	Parent=Os12t0595800-04
Chr12	irgsp1_rep	CDS	25024114	25024155	.	+	2	Parent=Os12t0595800-04
Chr12	irgsp1_rep	CDS	25025024	25026261	.	+	2	Parent=Os12t0595800-04
Chr12	irgsp1_rep	three_prime_UTR	25026262	25026429	.	+	.	Parent=Os12t0595800-04
Chr12	irgsp1_rep	mRNA	25019104	25026183	.	-	.	ID=Os12t0595900-00;Name=Os12t0595900-00;Locus_id=Os12g0595900;Note=Hypothetical protein.;Transcript_evidence=tplb0028h07 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0595900-00
Chr12	irgsp1_rep	five_prime_UTR	25025974	25026183	.	-	.	Parent=Os12t0595900-00
Chr12	irgsp1_rep	CDS	25025425	25025973	.	-	0	Parent=Os12t0595900-00
Chr12	irgsp1_rep	three_prime_UTR	25024977	25025424	.	-	.	Parent=Os12t0595900-00
Chr12	irgsp1_rep	three_prime_UTR	25022227	25022685	.	-	.	Parent=Os12t0595900-00
Chr12	irgsp1_rep	three_prime_UTR	25019104	25019482	.	-	.	Parent=Os12t0595900-00
Chr12	irgsp1_rep	mRNA	25026616	25032325	.	-	.	ID=Os12t0596000-02;Name=Os12t0596000-02;Locus_id=Os12g0596000;CGSNL Gene Symbol=ALDH12B1;CGSNL Gene Name=ALDEHYDE DEHYDROGENASE 12B1;Oryzabase Gene Symbol Synonym(s)=OsALDH12B1;Oryzabase Gene Name Synonym(s)=Aldehyde dehydrogenase 12B1;Note=Similar to Lipoyltransferase (EC 2.3.1.-) (Lipoyl-[acyl-carrier protein]-protein- N-lipoyltransferase) (Lipoate-protein ligase B).;Transcript_evidence=AK073530 (DDBJ%2C Best hit),AK101541 (DDBJ%2C Best hit);ORF_evidence=B6U7E2 (UniProt);NIAS_FLcDNA=J033046M10,J033048H21;Oryzabase=22116;Expression=AK073530;TENOR=Os12t0596000-02;KEGG=Os12t0596000-02 (EC:2.3.1.181)
Chr12	irgsp1_rep	five_prime_UTR	25032210	25032325	.	-	.	Parent=Os12t0596000-02
Chr12	irgsp1_rep	CDS	25032013	25032209	.	-	0	Parent=Os12t0596000-02
Chr12	irgsp1_rep	CDS	25031368	25031632	.	-	1	Parent=Os12t0596000-02
Chr12	irgsp1_rep	CDS	25030798	25030948	.	-	0	Parent=Os12t0596000-02
Chr12	irgsp1_rep	CDS	25030396	25030700	.	-	2	Parent=Os12t0596000-02
Chr12	irgsp1_rep	three_prime_UTR	25029789	25030395	.	-	.	Parent=Os12t0596000-02
Chr12	irgsp1_rep	three_prime_UTR	25026616	25027034	.	-	.	Parent=Os12t0596000-02
Chr12	irgsp1_rep	mRNA	25026750	25030385	.	+	.	ID=Os12t0596101-00;Name=Os12t0596101-00;Locus_id=Os12g0596101;Note=Similar to predicted protein.;Transcript_evidence=AK249111 (DDBJ);ORF_evidence=NP_001177043.1 (RefSeq);TENOR=Os12t0596101-00;KEGG=Os12t0596101-00
Chr12	irgsp1_rep	CDS	25026750	25027020	.	+	0	Parent=Os12t0596101-00
Chr12	irgsp1_rep	CDS	25030223	25030239	.	+	2	Parent=Os12t0596101-00
Chr12	irgsp1_rep	three_prime_UTR	25030240	25030385	.	+	.	Parent=Os12t0596101-00
Chr12	irgsp1_rep	mRNA	25035755	25036192	.	+	.	ID=Os12t0596201-00;Name=Os12t0596201-00;Locus_id=Os12g0596201;Note=Hypothetical protein.;Transcript_evidence=EU941316 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0596201-00
Chr12	irgsp1_rep	CDS	25035755	25036192	.	+	0	Parent=Os12t0596201-00
Chr12	irgsp1_rep	mRNA	25040193	25041378	.	+	.	ID=Os12t0596300-01;Name=Os12t0596300-01;Locus_id=Os12g0596300;Note=DC1 domain containing protein.;Transcript_evidence=AK109146 (DDBJ%2C Best hit);ORF_evidence=A2ZMC5 (UniProt);InterPro=DC1 (IPR004146);NIAS_FLcDNA=002-155-F04;Expression=AK109146;TENOR=Os12t0596300-01;KEGG=Os12t0596300-01
Chr12	irgsp1_rep	five_prime_UTR	25040193	25040277	.	+	.	Parent=Os12t0596300-01
Chr12	irgsp1_rep	CDS	25040278	25041210	.	+	0	Parent=Os12t0596300-01
Chr12	irgsp1_rep	three_prime_UTR	25041211	25041378	.	+	.	Parent=Os12t0596300-01
Chr12	irgsp1_rep	mRNA	25043356	25043429	.	-	.	ID=Os12t0596401-00;Name=Os12t0596401-00;Locus_id=Os12g0596401;Note=Non-protein coding transcript.;Transcript_evidence=X06283 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0596401-00
Chr12	irgsp1_rep	exon	25043356	25043429	.	-	.	Parent=Os12t0596401-00
Chr12	irgsp1_rep	mRNA	25045662	25047486	.	-	.	ID=Os12t0596501-00;Name=Os12t0596501-00;Locus_id=Os12g0596501;Note=Hypothetical protein.;Transcript_evidence=tplb0045o13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0596501-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	25046588	25047486	.	-	.	Parent=Os12t0596501-00
Chr12	irgsp1_rep	five_prime_UTR	25046184	25046292	.	-	.	Parent=Os12t0596501-00
Chr12	irgsp1_rep	CDS	25045662	25046183	.	-	0	Parent=Os12t0596501-00
Chr12	irgsp1_rep	mRNA	25046787	25048556	.	+	.	ID=Os12t0596600-01;Name=Os12t0596600-01;Locus_id=Os12g0596600;Note=Conserved hypothetical protein.;Transcript_evidence=AK064196 (DDBJ%2C Best hit);ORF_evidence=B9GE28 (UniProt);NIAS_FLcDNA=002-104-D05;Expression=AK064196;TENOR=Os12t0596600-01;KEGG=Os12t0596600-01
Chr12	irgsp1_rep	five_prime_UTR	25046787	25046787	.	+	.	Parent=Os12t0596600-01
Chr12	irgsp1_rep	CDS	25046788	25047489	.	+	0	Parent=Os12t0596600-01
Chr12	irgsp1_rep	three_prime_UTR	25047490	25048556	.	+	.	Parent=Os12t0596600-01
Chr12	irgsp1_rep	mRNA	25051273	25056620	.	+	.	ID=Os12t0596800-01;Name=Os12t0596800-01;Locus_id=Os12g0596800;Note=Zinc finger%2C LIM-type domain containing protein.;Transcript_evidence=AK065760 (DDBJ%2C Best hit);ORF_evidence=B6SPK3 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C LIM-type (IPR001781),Ubiquitin interacting motif (IPR003903),Protein of unknown function DUF3633 (IPR022087);NIAS_FLcDNA=J013039D10;Expression=AK065760;TENOR=Os12t0596800-01;KEGG=Os12t0596800-01
Chr12	irgsp1_rep	five_prime_UTR	25051273	25051507	.	+	.	Parent=Os12t0596800-01
Chr12	irgsp1_rep	five_prime_UTR	25051596	25051659	.	+	.	Parent=Os12t0596800-01
Chr12	irgsp1_rep	five_prime_UTR	25051776	25051842	.	+	.	Parent=Os12t0596800-01
Chr12	irgsp1_rep	five_prime_UTR	25052911	25052946	.	+	.	Parent=Os12t0596800-01
Chr12	irgsp1_rep	CDS	25052947	25053048	.	+	0	Parent=Os12t0596800-01
Chr12	irgsp1_rep	CDS	25053203	25053290	.	+	0	Parent=Os12t0596800-01
Chr12	irgsp1_rep	CDS	25053447	25053606	.	+	2	Parent=Os12t0596800-01
Chr12	irgsp1_rep	CDS	25054027	25054147	.	+	1	Parent=Os12t0596800-01
Chr12	irgsp1_rep	CDS	25054227	25054310	.	+	0	Parent=Os12t0596800-01
Chr12	irgsp1_rep	CDS	25054411	25054530	.	+	0	Parent=Os12t0596800-01
Chr12	irgsp1_rep	CDS	25055057	25055269	.	+	0	Parent=Os12t0596800-01
Chr12	irgsp1_rep	CDS	25055363	25055422	.	+	0	Parent=Os12t0596800-01
Chr12	irgsp1_rep	CDS	25055512	25055630	.	+	0	Parent=Os12t0596800-01
Chr12	irgsp1_rep	CDS	25055775	25055833	.	+	1	Parent=Os12t0596800-01
Chr12	irgsp1_rep	CDS	25055953	25056287	.	+	2	Parent=Os12t0596800-01
Chr12	irgsp1_rep	three_prime_UTR	25056288	25056620	.	+	.	Parent=Os12t0596800-01
Chr12	irgsp1_rep	mRNA	25053265	25056554	.	+	.	ID=Os12t0596800-02;Name=Os12t0596800-02;Locus_id=Os12g0596800;Note=Similar to Zinc ion binding protein.;Transcript_evidence=AK062035 (DDBJ%2C Best hit);ORF_evidence=B6SPK3 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C LIM-type (IPR001781),Ubiquitin interacting motif (IPR003903),Protein of unknown function DUF3633 (IPR022087);NIAS_FLcDNA=001-043-H07;Expression=AK062035;TENOR=Os12t0596800-02;KEGG=Os12t0596800-02
Chr12	irgsp1_rep	five_prime_UTR	25053265	25053265	.	+	.	Parent=Os12t0596800-02
Chr12	irgsp1_rep	CDS	25053266	25053290	.	+	0	Parent=Os12t0596800-02
Chr12	irgsp1_rep	CDS	25053447	25053606	.	+	2	Parent=Os12t0596800-02
Chr12	irgsp1_rep	CDS	25054027	25054147	.	+	1	Parent=Os12t0596800-02
Chr12	irgsp1_rep	CDS	25054227	25054310	.	+	0	Parent=Os12t0596800-02
Chr12	irgsp1_rep	CDS	25054411	25054530	.	+	0	Parent=Os12t0596800-02
Chr12	irgsp1_rep	CDS	25055057	25055269	.	+	0	Parent=Os12t0596800-02
Chr12	irgsp1_rep	CDS	25055363	25055422	.	+	0	Parent=Os12t0596800-02
Chr12	irgsp1_rep	CDS	25055512	25055630	.	+	0	Parent=Os12t0596800-02
Chr12	irgsp1_rep	CDS	25055775	25055833	.	+	1	Parent=Os12t0596800-02
Chr12	irgsp1_rep	CDS	25055953	25056287	.	+	2	Parent=Os12t0596800-02
Chr12	irgsp1_rep	three_prime_UTR	25056288	25056554	.	+	.	Parent=Os12t0596800-02
Chr12	irgsp1_rep	mRNA	25053213	25056287	.	-	.	ID=Os12t0596850-00;Name=Os12t0596850-00;Locus_id=Os12g0596850;Note=Non-protein coding transcript.;Transcript_evidence=tplb0034a09 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os12t0596850-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	exon	25055930	25056287	.	-	.	Parent=Os12t0596850-00
Chr12	irgsp1_rep	exon	25055525	25055656	.	-	.	Parent=Os12t0596850-00
Chr12	irgsp1_rep	exon	25055337	25055438	.	-	.	Parent=Os12t0596850-00
Chr12	irgsp1_rep	exon	25055075	25055249	.	-	.	Parent=Os12t0596850-00
Chr12	irgsp1_rep	exon	25054407	25054551	.	-	.	Parent=Os12t0596850-00
Chr12	irgsp1_rep	exon	25054208	25054306	.	-	.	Parent=Os12t0596850-00
Chr12	irgsp1_rep	exon	25053989	25054136	.	-	.	Parent=Os12t0596850-00
Chr12	irgsp1_rep	exon	25053446	25053571	.	-	.	Parent=Os12t0596850-00
Chr12	irgsp1_rep	exon	25053213	25053289	.	-	.	Parent=Os12t0596850-00
Chr12	irgsp1_rep	mRNA	25057086	25060655	.	+	.	ID=Os12t0596900-01;Name=Os12t0596900-01;Locus_id=Os12g0596900;Note=Glycosylphosphatidylinositol-mannosyltransferase I%2C PIG-X/PBN1 domain containing protein.;Transcript_evidence=AK100450 (DDBJ%2C Best hit);ORF_evidence=B8BMT8 (UniProt);GO=Biological Process: GPI anchor biosynthetic process (GO:0006506),Cellular Component: endoplasmic reticulum membrane (GO:0005789);InterPro=Glycosylphosphatidylinositol-mannosyltransferase I%2C PIG-X/PBN1 (IPR013233);NIAS_FLcDNA=J023090P15;Expression=AK100450;TENOR=Os12t0596900-01;KEGG=Os12t0596900-01
Chr12	irgsp1_rep	five_prime_UTR	25057086	25057442	.	+	.	Parent=Os12t0596900-01
Chr12	irgsp1_rep	CDS	25057443	25057538	.	+	0	Parent=Os12t0596900-01
Chr12	irgsp1_rep	CDS	25058050	25058416	.	+	0	Parent=Os12t0596900-01
Chr12	irgsp1_rep	CDS	25058501	25058655	.	+	2	Parent=Os12t0596900-01
Chr12	irgsp1_rep	CDS	25060363	25060614	.	+	0	Parent=Os12t0596900-01
Chr12	irgsp1_rep	three_prime_UTR	25060615	25060655	.	+	.	Parent=Os12t0596900-01
Chr12	irgsp1_rep	mRNA	25063210	25068208	.	+	.	ID=Os12t0597000-01;Name=Os12t0597000-01;Locus_id=Os12g0597000;CGSNL Gene Symbol=CBL2;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsCBL2;Oryzabase Gene Name Synonym(s)=Calcineurin B-like protein 2;Note=Similar to Calcineurin B-like protein 2 (SOS3-like calcium binding protein 1).;Transcript_evidence=AK111887 (DDBJ%2C Best hit);ORF_evidence=Q3HRP5 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Recoverin (IPR001125),Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-HAND 2 (IPR018249);NIAS_FLcDNA=J033068L17;Oryzabase=6099;TENOR=Os12t0597000-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	25063210	25063411	.	+	.	Parent=Os12t0597000-01
Chr12	irgsp1_rep	five_prime_UTR	25063526	25063695	.	+	.	Parent=Os12t0597000-01
Chr12	irgsp1_rep	CDS	25063696	25063816	.	+	0	Parent=Os12t0597000-01
Chr12	irgsp1_rep	CDS	25063948	25064030	.	+	2	Parent=Os12t0597000-01
Chr12	irgsp1_rep	CDS	25064168	25064227	.	+	0	Parent=Os12t0597000-01
Chr12	irgsp1_rep	CDS	25065302	25065410	.	+	0	Parent=Os12t0597000-01
Chr12	irgsp1_rep	CDS	25065626	25065678	.	+	2	Parent=Os12t0597000-01
Chr12	irgsp1_rep	CDS	25066172	25066252	.	+	0	Parent=Os12t0597000-01
Chr12	irgsp1_rep	CDS	25066860	25066972	.	+	0	Parent=Os12t0597000-01
Chr12	irgsp1_rep	CDS	25067693	25067750	.	+	1	Parent=Os12t0597000-01
Chr12	irgsp1_rep	three_prime_UTR	25067751	25068208	.	+	.	Parent=Os12t0597000-01
Chr12	irgsp1_rep	mRNA	25063691	25067753	.	-	.	ID=Os12t0597051-00;Name=Os12t0597051-00;Locus_id=Os12g0597051;Note=Non-protein coding transcript.;Transcript_evidence=BT018557 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0597051-00
Chr12	irgsp1_rep	exon	25067683	25067753	.	-	.	Parent=Os12t0597051-00
Chr12	irgsp1_rep	exon	25066858	25066967	.	-	.	Parent=Os12t0597051-00
Chr12	irgsp1_rep	exon	25066140	25066250	.	-	.	Parent=Os12t0597051-00
Chr12	irgsp1_rep	exon	25065301	25065425	.	-	.	Parent=Os12t0597051-00
Chr12	irgsp1_rep	exon	25064159	25064226	.	-	.	Parent=Os12t0597051-00
Chr12	irgsp1_rep	exon	25063948	25064018	.	-	.	Parent=Os12t0597051-00
Chr12	irgsp1_rep	exon	25063691	25063816	.	-	.	Parent=Os12t0597051-00
Chr12	irgsp1_rep	mRNA	25076498	25077559	.	+	.	ID=Os12t0597200-01;Name=Os12t0597200-01;Locus_id=Os12g0597200;Oryzabase Gene Symbol Synonym(s)=OsM12%2C M12%2C OsM12a;Oryzabase Gene Name Synonym(s)=single domain MDC protein 12%2C single MATH domain containing protein 12;Note=Similar to MATH domain containing protein%2C expressed.;Transcript_evidence=AK059486 (DDBJ%2C Best hit);ORF_evidence=Q2QMP1 (UniProt);NIAS_FLcDNA=001-028-G01;Oryzabase=21193;TENOR=Os12t0597200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	25076498	25076499	.	+	.	Parent=Os12t0597200-01
Chr12	irgsp1_rep	CDS	25076500	25077429	.	+	0	Parent=Os12t0597200-01
Chr12	irgsp1_rep	three_prime_UTR	25077430	25077559	.	+	.	Parent=Os12t0597200-01
Chr12	irgsp1_rep	mRNA	25078898	25082219	.	+	.	ID=Os12t0597300-01;Name=Os12t0597300-01;Locus_id=Os12g0597300;Note=Similar to Mutator-like transposase-like protein.;Transcript_evidence=AK066276 (DDBJ%2C Best hit);ORF_evidence=Q9SR14 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C CCHC-type (IPR001878),Transposase%2C MuDR%2C plant (IPR004332),Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527),MULE transposase domain (IPR018289);NIAS_FLcDNA=J013061P22;Expression=AK066276;TENOR=Os12t0597300-01;KEGG=Os12t0597300-01
Chr12	irgsp1_rep	five_prime_UTR	25078898	25079271	.	+	.	Parent=Os12t0597300-01
Chr12	irgsp1_rep	five_prime_UTR	25079434	25079529	.	+	.	Parent=Os12t0597300-01
Chr12	irgsp1_rep	CDS	25079530	25081779	.	+	0	Parent=Os12t0597300-01
Chr12	irgsp1_rep	three_prime_UTR	25081780	25082219	.	+	.	Parent=Os12t0597300-01
Chr12	irgsp1_rep	mRNA	25082544	25085996	.	-	.	ID=Os12t0597400-01;Name=Os12t0597400-01;Locus_id=Os12g0597400;Note=HI0933-like protein family protein.;Transcript_evidence=AK071949 (DDBJ%2C Best hit),AK099006 (DDBJ%2C Best hit);ORF_evidence=NP_566235.1 (RefSeq);NIAS_FLcDNA=J013078M05,J013112K08;Expression=AK071949;TENOR=Os12t0597400-01;KEGG=Os12t0597400-01
Chr12	irgsp1_rep	five_prime_UTR	25085966	25085996	.	-	.	Parent=Os12t0597400-01
Chr12	irgsp1_rep	CDS	25085609	25085965	.	-	0	Parent=Os12t0597400-01
Chr12	irgsp1_rep	CDS	25085233	25085526	.	-	0	Parent=Os12t0597400-01
Chr12	irgsp1_rep	CDS	25084678	25084804	.	-	0	Parent=Os12t0597400-01
Chr12	irgsp1_rep	CDS	25083926	25083987	.	-	2	Parent=Os12t0597400-01
Chr12	irgsp1_rep	CDS	25083604	25083834	.	-	0	Parent=Os12t0597400-01
Chr12	irgsp1_rep	CDS	25083303	25083424	.	-	0	Parent=Os12t0597400-01
Chr12	irgsp1_rep	CDS	25083069	25083207	.	-	1	Parent=Os12t0597400-01
Chr12	irgsp1_rep	CDS	25082759	25082920	.	-	0	Parent=Os12t0597400-01
Chr12	irgsp1_rep	three_prime_UTR	25082544	25082758	.	-	.	Parent=Os12t0597400-01
Chr12	irgsp1_rep	mRNA	25087027	25091564	.	-	.	ID=Os12t0597500-01;Name=Os12t0597500-01;Locus_id=Os12g0597500;CGSNL Gene Symbol=UAH;CGSNL Gene Name=UREIDOGLYCOLATE AMIDOHYDROLASE;Oryzabase Gene Symbol Synonym(s)=OsUAH;Oryzabase Gene Name Synonym(s)=ureidoglycolate amidohydrolase;Note=Peptidase M20 domain containing protein.;Transcript_evidence=AK103799 (DDBJ%2C Best hit);ORF_evidence=Q2QMN7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds%2C in linear amidines (GO:0016813);InterPro=Peptidase M20 (IPR002933),Amidase%2C hydantoinase/carbamoylase (IPR010158),Peptidase M20%2C dimerisation (IPR011650);NIAS_FLcDNA=J033146A10;Oryzabase=20256;Expression=AK103799;TENOR=Os12t0597500-01;KEGG=Os12t0597500-01
Chr12	irgsp1_rep	five_prime_UTR	25091564	25091564	.	-	.	Parent=Os12t0597500-01
Chr12	irgsp1_rep	CDS	25091474	25091563	.	-	0	Parent=Os12t0597500-01
Chr12	irgsp1_rep	CDS	25091074	25091108	.	-	0	Parent=Os12t0597500-01
Chr12	irgsp1_rep	CDS	25090584	25090658	.	-	1	Parent=Os12t0597500-01
Chr12	irgsp1_rep	CDS	25090229	25090357	.	-	1	Parent=Os12t0597500-01
Chr12	irgsp1_rep	CDS	25089725	25089811	.	-	1	Parent=Os12t0597500-01
Chr12	irgsp1_rep	CDS	25089422	25089624	.	-	1	Parent=Os12t0597500-01
Chr12	irgsp1_rep	CDS	25089247	25089349	.	-	2	Parent=Os12t0597500-01
Chr12	irgsp1_rep	CDS	25089062	25089153	.	-	1	Parent=Os12t0597500-01
Chr12	irgsp1_rep	CDS	25088227	25088289	.	-	2	Parent=Os12t0597500-01
Chr12	irgsp1_rep	CDS	25087908	25088148	.	-	2	Parent=Os12t0597500-01
Chr12	irgsp1_rep	CDS	25087708	25087748	.	-	1	Parent=Os12t0597500-01
Chr12	irgsp1_rep	CDS	25087372	25087469	.	-	2	Parent=Os12t0597500-01
Chr12	irgsp1_rep	three_prime_UTR	25087027	25087371	.	-	.	Parent=Os12t0597500-01
Chr12	irgsp1_rep	mRNA	25087098	25091543	.	-	.	ID=Os12t0597500-02;Name=Os12t0597500-02;Locus_id=Os12g0597500;CGSNL Gene Symbol=UAH;CGSNL Gene Name=UREIDOGLYCOLATE AMIDOHYDROLASE;Oryzabase Gene Symbol Synonym(s)=OsUAH;Oryzabase Gene Name Synonym(s)=ureidoglycolate amidohydrolase;Note=Similar to Amidase%2C hydantoinase/carbamoylase family protein%2C expressed.;Transcript_evidence=AK101904 (DDBJ%2C Best hit);ORF_evidence=Q2QMN7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: hydrolase activity%2C acting on carbon-nitrogen (but not peptide) bonds%2C in linear amidines (GO:0016813);InterPro=Peptidase M20 (IPR002933),Amidase%2C hydantoinase/carbamoylase (IPR010158),Peptidase M20%2C dimerisation (IPR011650);NIAS_FLcDNA=J033071E01;Oryzabase=20256;Expression=AK101904;TENOR=Os12t0597500-02;KEGG=Os12t0597500-02
Chr12	irgsp1_rep	five_prime_UTR	25091506	25091543	.	-	.	Parent=Os12t0597500-02
Chr12	irgsp1_rep	CDS	25091269	25091505	.	-	0	Parent=Os12t0597500-02
Chr12	irgsp1_rep	CDS	25091074	25091159	.	-	0	Parent=Os12t0597500-02
Chr12	irgsp1_rep	CDS	25090584	25090658	.	-	1	Parent=Os12t0597500-02
Chr12	irgsp1_rep	CDS	25090229	25090357	.	-	1	Parent=Os12t0597500-02
Chr12	irgsp1_rep	CDS	25089725	25089811	.	-	1	Parent=Os12t0597500-02
Chr12	irgsp1_rep	CDS	25089422	25089624	.	-	1	Parent=Os12t0597500-02
Chr12	irgsp1_rep	CDS	25089247	25089349	.	-	2	Parent=Os12t0597500-02
Chr12	irgsp1_rep	CDS	25089062	25089153	.	-	1	Parent=Os12t0597500-02
Chr12	irgsp1_rep	CDS	25088227	25088289	.	-	2	Parent=Os12t0597500-02
Chr12	irgsp1_rep	CDS	25087908	25088148	.	-	2	Parent=Os12t0597500-02
Chr12	irgsp1_rep	CDS	25087708	25087748	.	-	1	Parent=Os12t0597500-02
Chr12	irgsp1_rep	CDS	25087372	25087469	.	-	2	Parent=Os12t0597500-02
Chr12	irgsp1_rep	three_prime_UTR	25087098	25087371	.	-	.	Parent=Os12t0597500-02
Chr12	irgsp1_rep	mRNA	25091764	25098242	.	+	.	ID=Os12t0597600-01;Name=Os12t0597600-01;Locus_id=Os12g0597600;Note=Similar to KH domain containing protein.;Transcript_evidence=AK066451 (DDBJ%2C Best hit);ORF_evidence=NP_001148654.1 (RefSeq);GO=Molecular Function: RNA binding (GO:0003723);InterPro=K Homology%2C type 1 (IPR004088),K Homology%2C type 1%2C subgroup (IPR018111);NIAS_FLcDNA=J013062H18;TENOR=Os12t0597600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	25091764	25091895	.	+	.	Parent=Os12t0597600-01
Chr12	irgsp1_rep	five_prime_UTR	25092452	25092456	.	+	.	Parent=Os12t0597600-01
Chr12	irgsp1_rep	CDS	25092457	25092939	.	+	0	Parent=Os12t0597600-01
Chr12	irgsp1_rep	CDS	25094294	25094311	.	+	0	Parent=Os12t0597600-01
Chr12	irgsp1_rep	three_prime_UTR	25094312	25094458	.	+	.	Parent=Os12t0597600-01
Chr12	irgsp1_rep	three_prime_UTR	25095556	25095802	.	+	.	Parent=Os12t0597600-01
Chr12	irgsp1_rep	three_prime_UTR	25096465	25096613	.	+	.	Parent=Os12t0597600-01
Chr12	irgsp1_rep	three_prime_UTR	25096699	25096986	.	+	.	Parent=Os12t0597600-01
Chr12	irgsp1_rep	three_prime_UTR	25097096	25097284	.	+	.	Parent=Os12t0597600-01
Chr12	irgsp1_rep	three_prime_UTR	25097803	25098242	.	+	.	Parent=Os12t0597600-01
Chr12	irgsp1_rep	mRNA	25100479	25102301	.	+	.	ID=Os12t0597650-01;Name=Os12t0597650-01;Locus_id=Os12g0597650;Note=Non-protein coding transcript.;Transcript_evidence=AK288557 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090047F04;TENOR=Os12t0597650-01
Chr12	irgsp1_rep	exon	25100479	25102301	.	+	.	Parent=Os12t0597650-01
Chr12	irgsp1_rep	mRNA	25101042	25104175	.	-	.	ID=Os12t0597700-01;Name=Os12t0597700-01;Locus_id=Os12g0597700;RAP-DB Gene Symbol Synonym(s)=OsWRKY94%2C WRKY94;RAP-DB Gene Name Synonym(s)=WRKY GENE 94;CGSNL Gene Symbol=WRKY94;CGSNL Gene Name=WRKY GENE 94;Oryzabase Gene Symbol Synonym(s)=OsWRKY94;Note=WRKY transcription factor%2C Cold tolerance;Transcript_evidence=AK070648;ORF_evidence=Q2QMN4;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: transcription factor activity%2C sequence-specific DNA binding (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=WRKY domain superfamily (IPR036576),Zn-cluster domain (IPR018872),WRKY domain (IPR003657);NIAS_FLcDNA=J023062B16;Manual Curation=January 29%2C 2018;Literature_PMID=29364524,Rice WRKY Working Group 2012. Rice 5:3.;Oryzabase=8960;Expression=AK070648;TENOR=Os12t0597700-01;KEGG=Os12t0597700-01
Chr12	irgsp1_rep	five_prime_UTR	25103985	25104175	.	-	.	Parent=Os12t0597700-01
Chr12	irgsp1_rep	five_prime_UTR	25103563	25103632	.	-	.	Parent=Os12t0597700-01
Chr12	irgsp1_rep	CDS	25102742	25103562	.	-	0	Parent=Os12t0597700-01
Chr12	irgsp1_rep	CDS	25102514	25102639	.	-	1	Parent=Os12t0597700-01
Chr12	irgsp1_rep	CDS	25101734	25101878	.	-	1	Parent=Os12t0597700-01
Chr12	irgsp1_rep	three_prime_UTR	25101042	25101733	.	-	.	Parent=Os12t0597700-01
Chr12	irgsp1_rep	mRNA	25101048	25103262	.	-	.	ID=Os12t0597700-02;Name=Os12t0597700-02;Locus_id=Os12g0597700;CGSNL Gene Symbol=WRKY94;CGSNL Gene Name=WRKY GENE 94;Oryzabase Gene Symbol Synonym(s)=OsWRKY94;Note=Similar to WRKY DNA binding domain containing protein%2C expressed.;Transcript_evidence=AK104890 (DDBJ%2C Best hit);ORF_evidence=Q2QMN5 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=DNA-binding WRKY (IPR003657),Zn-cluster domain (IPR018872);NIAS_FLcDNA=001-045-D06;Oryzabase=8960;Expression=AK104890;TENOR=Os12t0597700-02;KEGG=Os12t0597700-02
Chr12	irgsp1_rep	CDS	25102742	25103262	.	-	0	Parent=Os12t0597700-02
Chr12	irgsp1_rep	CDS	25102514	25102639	.	-	1	Parent=Os12t0597700-02
Chr12	irgsp1_rep	CDS	25101734	25101878	.	-	1	Parent=Os12t0597700-02
Chr12	irgsp1_rep	three_prime_UTR	25101048	25101733	.	-	.	Parent=Os12t0597700-02
Chr12	irgsp1_rep	mRNA	25116029	25119760	.	+	.	ID=Os12t0597800-01;Name=Os12t0597800-01;Locus_id=Os12g0597800;Oryzabase Gene Symbol Synonym(s)=OsbHLH135;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 135;Note=Similar to Helix-loop-helix DNA-binding domain containing protein%2C expressed.;Transcript_evidence=AK108042 (DDBJ%2C Best hit);ORF_evidence=Q2QMN2 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);NIAS_FLcDNA=002-137-D10;Oryzabase=15412;TENOR=Os12t0597800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	25116029	25116158	.	+	.	Parent=Os12t0597800-01
Chr12	irgsp1_rep	CDS	25116159	25116271	.	+	0	Parent=Os12t0597800-01
Chr12	irgsp1_rep	CDS	25116375	25116693	.	+	1	Parent=Os12t0597800-01
Chr12	irgsp1_rep	CDS	25116909	25116962	.	+	0	Parent=Os12t0597800-01
Chr12	irgsp1_rep	CDS	25117785	25117850	.	+	0	Parent=Os12t0597800-01
Chr12	irgsp1_rep	CDS	25118279	25118344	.	+	0	Parent=Os12t0597800-01
Chr12	irgsp1_rep	CDS	25118858	25119037	.	+	0	Parent=Os12t0597800-01
Chr12	irgsp1_rep	three_prime_UTR	25119038	25119760	.	+	.	Parent=Os12t0597800-01
Chr12	irgsp1_rep	mRNA	25098261	25098839	.	-	.	ID=Os12t0598000-01;Name=Os12t0598000-01;Locus_id=Os12g0598000;Note=Non-protein coding transcript.;Transcript_evidence=AK242434 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J080093A09;TENOR=Os12t0598000-01
Chr12	irgsp1_rep	exon	25098261	25098839	.	-	.	Parent=Os12t0598000-01
Chr12	irgsp1_rep	mRNA	25149867	25150695	.	-	.	ID=Os12t0598600-00;Name=Os12t0598600-00;Locus_id=Os12g0598600;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);InterPro=Ribonuclease H1%2C N-terminal (IPR011320);TENOR=Os12t0598600-00
Chr12	irgsp1_rep	five_prime_UTR	25150692	25150695	.	-	.	Parent=Os12t0598600-00
Chr12	irgsp1_rep	CDS	25149867	25150691	.	-	0	Parent=Os12t0598600-00
Chr12	irgsp1_rep	mRNA	25215052	25215504	.	-	.	ID=Os12t0599400-00;Name=Os12t0599400-00;Locus_id=Os12g0599400;CGSNL Gene Symbol=BHLH116;CGSNL Gene Name=BASIC HELIX-LOOP-HELIX PROTEIN 116;Oryzabase Gene Symbol Synonym(s)=OsbHLH116%2C bHLH116;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 116;Note=Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QML8 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);Oryzabase=15396;TENOR=Os12t0599400-00;KEGG=Os12t0599400-00
Chr12	irgsp1_rep	CDS	25215052	25215504	.	-	0	Parent=Os12t0599400-00
Chr12	irgsp1_rep	mRNA	25216398	25218542	.	-	.	ID=Os12t0599550-00;Name=Os12t0599550-00;Locus_id=Os12g0599550;CGSNL Gene Symbol=BHLH116;CGSNL Gene Name=BASIC HELIX-LOOP-HELIX PROTEIN 116;Oryzabase Gene Symbol Synonym(s)=OsbHLH116%2C bHLH116;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 116;Note=Similar to Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QML8 (UniProt);Oryzabase=15396;TENOR=Os12t0599550-00;KEGG=Os12t0599550-00
Chr12	irgsp1_rep	CDS	25218400	25218542	.	-	0	Parent=Os12t0599550-00
Chr12	irgsp1_rep	CDS	25217360	25217735	.	-	1	Parent=Os12t0599550-00
Chr12	irgsp1_rep	CDS	25216545	25216659	.	-	0	Parent=Os12t0599550-00
Chr12	irgsp1_rep	CDS	25216398	25216420	.	-	2	Parent=Os12t0599550-00
Chr12	irgsp1_rep	mRNA	25226631	25227101	.	+	.	ID=Os12t0599625-01;Name=Os12t0599625-01;Locus_id=Os12g0599625;Note=Non-protein coding transcript.;Transcript_evidence=AK105340 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-118-G06;TENOR=Os12t0599625-01
Chr12	irgsp1_rep	exon	25226631	25227101	.	+	.	Parent=Os12t0599625-01
Chr12	irgsp1_rep	mRNA	25233296	25234195	.	-	.	ID=Os12t0599700-01;Name=Os12t0599700-01;Locus_id=Os12g0599700;Note=Similar to Pectinesterase inhibitor domain containing protein%2C expressed.;Transcript_evidence=AK108003 (DDBJ%2C Best hit);ORF_evidence=Q2QML6 (UniProt);NIAS_FLcDNA=002-135-G08;TENOR=Os12t0599700-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	25234063	25234195	.	-	.	Parent=Os12t0599700-01
Chr12	irgsp1_rep	CDS	25234022	25234062	.	-	0	Parent=Os12t0599700-01
Chr12	irgsp1_rep	CDS	25233485	25233689	.	-	1	Parent=Os12t0599700-01
Chr12	irgsp1_rep	three_prime_UTR	25233296	25233484	.	-	.	Parent=Os12t0599700-01
Chr12	irgsp1_rep	mRNA	25234869	25235824	.	+	.	ID=Os12t0599800-01;Name=Os12t0599800-01;Locus_id=Os12g0599800;Note=Pectinesterase inhibitor domain containing protein.;Transcript_evidence=AK111139 (DDBJ%2C Best hit);ORF_evidence=A2ZME3 (UniProt);GO=Molecular Function: enzyme inhibitor activity (GO:0004857),Molecular Function: pectinesterase activity (GO:0030599);InterPro=Pectinesterase inhibitor (IPR006501);NIAS_FLcDNA=002-176-D12;Expression=AK111139;TENOR=Os12t0599800-01;KEGG=Os12t0599800-01
Chr12	irgsp1_rep	five_prime_UTR	25234869	25235064	.	+	.	Parent=Os12t0599800-01
Chr12	irgsp1_rep	CDS	25235065	25235694	.	+	0	Parent=Os12t0599800-01
Chr12	irgsp1_rep	three_prime_UTR	25235695	25235824	.	+	.	Parent=Os12t0599800-01
Chr12	irgsp1_rep	mRNA	25236012	25240695	.	+	.	ID=Os12t0599900-01;Name=Os12t0599900-01;Locus_id=Os12g0599900;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK101252 (DDBJ%2C Best hit);ORF_evidence=B4FG08 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide TPR-1 (IPR001440),Ankyrin repeat (IPR002110),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J033032F05;Expression=AK101252;TENOR=Os12t0599900-01;KEGG=Os12t0599900-01
Chr12	irgsp1_rep	five_prime_UTR	25236012	25236119	.	+	.	Parent=Os12t0599900-01
Chr12	irgsp1_rep	CDS	25236120	25236186	.	+	0	Parent=Os12t0599900-01
Chr12	irgsp1_rep	CDS	25236561	25236707	.	+	2	Parent=Os12t0599900-01
Chr12	irgsp1_rep	CDS	25236806	25236937	.	+	2	Parent=Os12t0599900-01
Chr12	irgsp1_rep	CDS	25237043	25237182	.	+	2	Parent=Os12t0599900-01
Chr12	irgsp1_rep	CDS	25237385	25237471	.	+	0	Parent=Os12t0599900-01
Chr12	irgsp1_rep	CDS	25237672	25237806	.	+	0	Parent=Os12t0599900-01
Chr12	irgsp1_rep	CDS	25238458	25238610	.	+	0	Parent=Os12t0599900-01
Chr12	irgsp1_rep	CDS	25239160	25239261	.	+	0	Parent=Os12t0599900-01
Chr12	irgsp1_rep	CDS	25239779	25239949	.	+	0	Parent=Os12t0599900-01
Chr12	irgsp1_rep	CDS	25240058	25240137	.	+	0	Parent=Os12t0599900-01
Chr12	irgsp1_rep	CDS	25240259	25240316	.	+	1	Parent=Os12t0599900-01
Chr12	irgsp1_rep	three_prime_UTR	25240317	25240695	.	+	.	Parent=Os12t0599900-01
Chr12	irgsp1_rep	mRNA	25241192	25242261	.	+	.	ID=Os12t0600000-01;Name=Os12t0600000-01;Locus_id=Os12g0600000;Note=Conserved hypothetical protein.;Transcript_evidence=AK109945 (DDBJ%2C Best hit);ORF_evidence=NP_001067202.1 (RefSeq);NIAS_FLcDNA=002-155-E05;TENOR=Os12t0600000-01;KEGG=Os12t0600000-01
Chr12	irgsp1_rep	five_prime_UTR	25241192	25241667	.	+	.	Parent=Os12t0600000-01
Chr12	irgsp1_rep	CDS	25241668	25242048	.	+	0	Parent=Os12t0600000-01
Chr12	irgsp1_rep	three_prime_UTR	25242049	25242261	.	+	.	Parent=Os12t0600000-01
Chr12	irgsp1_rep	mRNA	25242398	25246733	.	+	.	ID=Os12t0600100-01;Name=Os12t0600100-01;Locus_id=Os12g0600100;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK063560 (DDBJ%2C Best hit);ORF_evidence=B4FG08 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide TPR-1 (IPR001440),Ankyrin repeat (IPR002110),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=001-117-F02;Expression=AK063560;TENOR=Os12t0600100-01;KEGG=Os12t0600100-01
Chr12	irgsp1_rep	five_prime_UTR	25242398	25242475	.	+	.	Parent=Os12t0600100-01
Chr12	irgsp1_rep	CDS	25242476	25242542	.	+	0	Parent=Os12t0600100-01
Chr12	irgsp1_rep	CDS	25242974	25243120	.	+	2	Parent=Os12t0600100-01
Chr12	irgsp1_rep	CDS	25243254	25243385	.	+	2	Parent=Os12t0600100-01
Chr12	irgsp1_rep	CDS	25243529	25243668	.	+	2	Parent=Os12t0600100-01
Chr12	irgsp1_rep	CDS	25243880	25243966	.	+	0	Parent=Os12t0600100-01
Chr12	irgsp1_rep	CDS	25244175	25244193	.	+	0	Parent=Os12t0600100-01
Chr12	irgsp1_rep	CDS	25244272	25244303	.	+	2	Parent=Os12t0600100-01
Chr12	irgsp1_rep	CDS	25244892	25245044	.	+	0	Parent=Os12t0600100-01
Chr12	irgsp1_rep	CDS	25245290	25245391	.	+	0	Parent=Os12t0600100-01
Chr12	irgsp1_rep	CDS	25245906	25246076	.	+	0	Parent=Os12t0600100-01
Chr12	irgsp1_rep	CDS	25246172	25246251	.	+	0	Parent=Os12t0600100-01
Chr12	irgsp1_rep	CDS	25246379	25246412	.	+	1	Parent=Os12t0600100-01
Chr12	irgsp1_rep	three_prime_UTR	25246413	25246733	.	+	.	Parent=Os12t0600100-01
Chr12	irgsp1_rep	mRNA	25245673	25246136	.	-	.	ID=Os12t0600150-01;Name=Os12t0600150-01;Locus_id=Os12g0600150;Note=Hypothetical gene.;Transcript_evidence=AK241829 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065212O06;TENOR=Os12t0600150-01;KEGG=Os12t0600150-01
Chr12	irgsp1_rep	five_prime_UTR	25246073	25246136	.	-	.	Parent=Os12t0600150-01
Chr12	irgsp1_rep	CDS	25245842	25246072	.	-	0	Parent=Os12t0600150-01
Chr12	irgsp1_rep	three_prime_UTR	25245673	25245841	.	-	.	Parent=Os12t0600150-01
Chr12	irgsp1_rep	mRNA	25247759	25253940	.	-	.	ID=Os12t0600200-01;Name=Os12t0600200-01;Locus_id=Os12g0600200;Note=Similar to Zinc finger%2C C3HC4 type family protein%2C expressed.;Transcript_evidence=AK122147 (DDBJ%2C Best hit);ORF_evidence=Q10GD6 (UniProt);NIAS_FLcDNA=J033138G15;TENOR=Os12t0600200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	25253770	25253940	.	-	.	Parent=Os12t0600200-01
Chr12	irgsp1_rep	CDS	25253131	25253769	.	-	0	Parent=Os12t0600200-01
Chr12	irgsp1_rep	three_prime_UTR	25251739	25253130	.	-	.	Parent=Os12t0600200-01
Chr12	irgsp1_rep	three_prime_UTR	25250482	25250812	.	-	.	Parent=Os12t0600200-01
Chr12	irgsp1_rep	three_prime_UTR	25249922	25250331	.	-	.	Parent=Os12t0600200-01
Chr12	irgsp1_rep	three_prime_UTR	25249769	25249819	.	-	.	Parent=Os12t0600200-01
Chr12	irgsp1_rep	three_prime_UTR	25248736	25248808	.	-	.	Parent=Os12t0600200-01
Chr12	irgsp1_rep	three_prime_UTR	25247759	25248386	.	-	.	Parent=Os12t0600200-01
Chr12	irgsp1_rep	mRNA	25250479	25253380	.	-	.	ID=Os12t0600200-02;Name=Os12t0600200-02;Locus_id=Os12g0600200;Note=Similar to Zinc finger%2C C3HC4 type (RING finger) containing protein.;Transcript_evidence=AK102450 (DDBJ%2C Best hit);ORF_evidence=Q60DL1 (UniProt);InterPro=Zinc finger%2C RING/FYVE/PHD-type (IPR013083);NIAS_FLcDNA=J033093O17;Expression=AK102450;TENOR=Os12t0600200-02;KEGG=Os12t0600200-02
Chr12	irgsp1_rep	five_prime_UTR	25251891	25253380	.	-	.	Parent=Os12t0600200-02
Chr12	irgsp1_rep	CDS	25251739	25251890	.	-	0	Parent=Os12t0600200-02
Chr12	irgsp1_rep	CDS	25250479	25250812	.	-	1	Parent=Os12t0600200-02
Chr12	irgsp1_rep	mRNA	25247754	25250814	.	-	.	ID=Os12t0600200-03;Name=Os12t0600200-03;Locus_id=Os12g0600200;Note=Similar to Zinc finger%2C C3HC4 type (RING finger) containing protein.;Transcript_evidence=AK102932 (DDBJ%2C Best hit);ORF_evidence=Q10GD6 (UniProt);NIAS_FLcDNA=J033114H15;Expression=AK102932;TENOR=Os12t0600200-03;KEGG=Os12t0600200-03
Chr12	irgsp1_rep	CDS	25250482	25250814	.	-	0	Parent=Os12t0600200-03
Chr12	irgsp1_rep	CDS	25249922	25250331	.	-	0	Parent=Os12t0600200-03
Chr12	irgsp1_rep	CDS	25249769	25249819	.	-	1	Parent=Os12t0600200-03
Chr12	irgsp1_rep	CDS	25248736	25248808	.	-	1	Parent=Os12t0600200-03
Chr12	irgsp1_rep	CDS	25248219	25248386	.	-	0	Parent=Os12t0600200-03
Chr12	irgsp1_rep	three_prime_UTR	25247754	25248218	.	-	.	Parent=Os12t0600200-03
Chr12	irgsp1_rep	mRNA	25249925	25253849	.	+	.	ID=Os12t0600301-00;Name=Os12t0600301-00;Locus_id=Os12g0600301;Note=Hypothetical protein.;Transcript_evidence=tplb0048g08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0600301-00
Chr12	irgsp1_rep	five_prime_UTR	25249925	25250328	.	+	.	Parent=Os12t0600301-00
Chr12	irgsp1_rep	five_prime_UTR	25250479	25250802	.	+	.	Parent=Os12t0600301-00
Chr12	irgsp1_rep	five_prime_UTR	25251728	25251845	.	+	.	Parent=Os12t0600301-00
Chr12	irgsp1_rep	five_prime_UTR	25253500	25253530	.	+	.	Parent=Os12t0600301-00
Chr12	irgsp1_rep	CDS	25253531	25253849	.	+	0	Parent=Os12t0600301-00
Chr12	irgsp1_rep	mRNA	25271759	25277012	.	+	.	ID=Os12t0600400-01;Name=Os12t0600400-01;Locus_id=Os12g0600400;Note=Similar to Pyridoxal kinase.;Transcript_evidence=AK066514 (DDBJ%2C Best hit);ORF_evidence=Q69G22 (UniProt);GO=Biological Process: pyridoxal 5'-phosphate salvage (GO:0009443),Molecular Function: pyridoxal kinase activity (GO:0008478);InterPro=Pyridoxal phosphate (active vitamin B6) biosynthesis%2C pyridoxal kinase (IPR004625),Phosphomethylpyrimidine kinase type-1 (IPR013749);NIAS_FLcDNA=J013069D01;Expression=AK066514;TENOR=Os12t0600400-01;KEGG=Os12t0600400-01 (EC:2.7.1.35)
Chr12	irgsp1_rep	five_prime_UTR	25271759	25271929	.	+	.	Parent=Os12t0600400-01
Chr12	irgsp1_rep	CDS	25271930	25272010	.	+	0	Parent=Os12t0600400-01
Chr12	irgsp1_rep	CDS	25272514	25272607	.	+	0	Parent=Os12t0600400-01
Chr12	irgsp1_rep	CDS	25272691	25272795	.	+	2	Parent=Os12t0600400-01
Chr12	irgsp1_rep	CDS	25272976	25273059	.	+	2	Parent=Os12t0600400-01
Chr12	irgsp1_rep	CDS	25273192	25273265	.	+	2	Parent=Os12t0600400-01
Chr12	irgsp1_rep	CDS	25273840	25273904	.	+	0	Parent=Os12t0600400-01
Chr12	irgsp1_rep	CDS	25274154	25274217	.	+	1	Parent=Os12t0600400-01
Chr12	irgsp1_rep	CDS	25274335	25274400	.	+	0	Parent=Os12t0600400-01
Chr12	irgsp1_rep	CDS	25275291	25275347	.	+	0	Parent=Os12t0600400-01
Chr12	irgsp1_rep	CDS	25275832	25275876	.	+	0	Parent=Os12t0600400-01
Chr12	irgsp1_rep	CDS	25276001	25276054	.	+	0	Parent=Os12t0600400-01
Chr12	irgsp1_rep	CDS	25276496	25276636	.	+	0	Parent=Os12t0600400-01
Chr12	irgsp1_rep	three_prime_UTR	25276637	25277012	.	+	.	Parent=Os12t0600400-01
Chr12	irgsp1_rep	mRNA	25272580	25274847	.	-	.	ID=Os12t0600550-01;Name=Os12t0600550-01;Locus_id=Os12g0600550;Note=Non-protein coding transcript.;Transcript_evidence=AK288257 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090015O03;TENOR=Os12t0600550-01
Chr12	irgsp1_rep	exon	25272580	25274847	.	-	.	Parent=Os12t0600550-01
Chr12	irgsp1_rep	mRNA	25282668	25284327	.	-	.	ID=Os12t0600701-00;Name=Os12t0600701-00;Locus_id=Os12g0600701;Note=Conserved hypothetical protein.;Transcript_evidence=CU406704 (DDBJ%2C Best hit);ORF_evidence=NP_001177048.1 (RefSeq);TENOR=Os12t0600701-00;KEGG=Os12t0600701-00
Chr12	irgsp1_rep	five_prime_UTR	25284166	25284327	.	-	.	Parent=Os12t0600701-00
Chr12	irgsp1_rep	five_prime_UTR	25283657	25283732	.	-	.	Parent=Os12t0600701-00
Chr12	irgsp1_rep	CDS	25283486	25283656	.	-	0	Parent=Os12t0600701-00
Chr12	irgsp1_rep	CDS	25283081	25283395	.	-	0	Parent=Os12t0600701-00
Chr12	irgsp1_rep	three_prime_UTR	25282668	25283080	.	-	.	Parent=Os12t0600701-00
Chr12	irgsp1_rep	mRNA	25297910	25302130	.	+	.	ID=Os12t0601000-00;Name=Os12t0601000-00;Locus_id=Os12g0601000;Oryzabase Gene Symbol Synonym(s)=Os_F0685;Note=Similar to Leucine Rich Repeat family protein%2C expressed.;Transcript_evidence=EU973703 (DDBJ);ORF_evidence=Q2QMK5 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);Oryzabase=17570;TENOR=Os12t0601000-00;KEGG=Os12t0601000-00
Chr12	irgsp1_rep	five_prime_UTR	25297910	25298065	.	+	.	Parent=Os12t0601000-00
Chr12	irgsp1_rep	CDS	25298066	25298568	.	+	0	Parent=Os12t0601000-00
Chr12	irgsp1_rep	CDS	25299704	25299805	.	+	1	Parent=Os12t0601000-00
Chr12	irgsp1_rep	CDS	25300174	25300318	.	+	1	Parent=Os12t0601000-00
Chr12	irgsp1_rep	CDS	25300401	25300585	.	+	0	Parent=Os12t0601000-00
Chr12	irgsp1_rep	CDS	25300696	25300800	.	+	1	Parent=Os12t0601000-00
Chr12	irgsp1_rep	CDS	25300906	25301003	.	+	1	Parent=Os12t0601000-00
Chr12	irgsp1_rep	CDS	25301085	25301323	.	+	2	Parent=Os12t0601000-00
Chr12	irgsp1_rep	CDS	25301429	25301495	.	+	0	Parent=Os12t0601000-00
Chr12	irgsp1_rep	CDS	25301589	25301674	.	+	2	Parent=Os12t0601000-00
Chr12	irgsp1_rep	CDS	25301978	25302130	.	+	0	Parent=Os12t0601000-00
Chr12	irgsp1_rep	mRNA	25305806	25309728	.	+	.	ID=Os12t0601200-01;Name=Os12t0601200-01;Locus_id=Os12g0601200;Note=Uridine kinase family protein.;Transcript_evidence=AK059928 (DDBJ%2C Best hit);ORF_evidence=B6TCV6 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: ATP binding (GO:0005524),Molecular Function: kinase activity (GO:0016301);InterPro=Phosphoribulokinase/uridine kinase (IPR006083);NIAS_FLcDNA=006-210-A06;Expression=AK059928;TENOR=Os12t0601200-01;KEGG=Os12t0601200-01
Chr12	irgsp1_rep	five_prime_UTR	25305806	25305913	.	+	.	Parent=Os12t0601200-01
Chr12	irgsp1_rep	CDS	25305914	25305947	.	+	0	Parent=Os12t0601200-01
Chr12	irgsp1_rep	CDS	25306088	25306236	.	+	2	Parent=Os12t0601200-01
Chr12	irgsp1_rep	CDS	25306331	25306389	.	+	0	Parent=Os12t0601200-01
Chr12	irgsp1_rep	CDS	25307064	25307141	.	+	1	Parent=Os12t0601200-01
Chr12	irgsp1_rep	CDS	25307554	25307746	.	+	1	Parent=Os12t0601200-01
Chr12	irgsp1_rep	CDS	25307823	25307853	.	+	0	Parent=Os12t0601200-01
Chr12	irgsp1_rep	CDS	25307933	25307991	.	+	2	Parent=Os12t0601200-01
Chr12	irgsp1_rep	CDS	25308073	25308146	.	+	0	Parent=Os12t0601200-01
Chr12	irgsp1_rep	CDS	25308627	25308713	.	+	1	Parent=Os12t0601200-01
Chr12	irgsp1_rep	CDS	25308921	25308982	.	+	1	Parent=Os12t0601200-01
Chr12	irgsp1_rep	CDS	25309075	25309103	.	+	2	Parent=Os12t0601200-01
Chr12	irgsp1_rep	CDS	25309436	25309528	.	+	0	Parent=Os12t0601200-01
Chr12	irgsp1_rep	three_prime_UTR	25309529	25309728	.	+	.	Parent=Os12t0601200-01
Chr12	irgsp1_rep	mRNA	25305851	25309725	.	+	.	ID=Os12t0601200-02;Name=Os12t0601200-02;Locus_id=Os12g0601200;Note=Similar to ATP binding protein.;Transcript_evidence=AK073304 (DDBJ%2C Best hit);ORF_evidence=B6TCV6 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: ATP binding (GO:0005524),Molecular Function: kinase activity (GO:0016301);InterPro=Phosphoribulokinase/uridine kinase (IPR006083);NIAS_FLcDNA=J033026B21;TENOR=Os12t0601200-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	25305851	25305913	.	+	.	Parent=Os12t0601200-02
Chr12	irgsp1_rep	CDS	25305914	25305947	.	+	0	Parent=Os12t0601200-02
Chr12	irgsp1_rep	CDS	25306088	25306236	.	+	2	Parent=Os12t0601200-02
Chr12	irgsp1_rep	CDS	25306331	25306389	.	+	0	Parent=Os12t0601200-02
Chr12	irgsp1_rep	CDS	25307064	25307141	.	+	1	Parent=Os12t0601200-02
Chr12	irgsp1_rep	CDS	25307554	25307746	.	+	1	Parent=Os12t0601200-02
Chr12	irgsp1_rep	CDS	25307823	25307853	.	+	0	Parent=Os12t0601200-02
Chr12	irgsp1_rep	CDS	25307933	25307991	.	+	2	Parent=Os12t0601200-02
Chr12	irgsp1_rep	CDS	25308073	25308150	.	+	0	Parent=Os12t0601200-02
Chr12	irgsp1_rep	three_prime_UTR	25308151	25308713	.	+	.	Parent=Os12t0601200-02
Chr12	irgsp1_rep	three_prime_UTR	25308921	25308982	.	+	.	Parent=Os12t0601200-02
Chr12	irgsp1_rep	three_prime_UTR	25309075	25309103	.	+	.	Parent=Os12t0601200-02
Chr12	irgsp1_rep	three_prime_UTR	25309436	25309725	.	+	.	Parent=Os12t0601200-02
Chr12	irgsp1_rep	mRNA	25310893	25316150	.	-	.	ID=Os12t0601300-01;Name=Os12t0601300-01;Locus_id=Os12g0601300;CGSNL Gene Symbol=IAA30;Oryzabase Gene Symbol Synonym(s)=OsIAA30;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 30;Note=Similar to Auxin-responsive protein (Aux/IAA) (Fragment).;Transcript_evidence=AK068213 (DDBJ%2C Best hit);ORF_evidence=P0C132 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Aux/IAA-ARF-dimerisation (IPR011525);NIAS_FLcDNA=J013149K13;Oryzabase=10917;Expression=AK068213;TENOR=Os12t0601300-01;KEGG=Os12t0601300-01
Chr12	irgsp1_rep	five_prime_UTR	25315901	25316150	.	-	.	Parent=Os12t0601300-01
Chr12	irgsp1_rep	CDS	25315548	25315900	.	-	0	Parent=Os12t0601300-01
Chr12	irgsp1_rep	CDS	25313037	25313284	.	-	1	Parent=Os12t0601300-01
Chr12	irgsp1_rep	CDS	25311750	25311882	.	-	2	Parent=Os12t0601300-01
Chr12	irgsp1_rep	CDS	25311532	25311593	.	-	1	Parent=Os12t0601300-01
Chr12	irgsp1_rep	CDS	25311353	25311390	.	-	2	Parent=Os12t0601300-01
Chr12	irgsp1_rep	three_prime_UTR	25310893	25311352	.	-	.	Parent=Os12t0601300-01
Chr12	irgsp1_rep	mRNA	25325555	25327111	.	+	.	ID=Os12t0601400-01;Name=Os12t0601400-01;Locus_id=Os12g0601400;CGSNL Gene Symbol=IAA31;Oryzabase Gene Symbol Synonym(s)=OsIAA3%2C OsIAA31;Oryzabase Gene Name Synonym(s)=Aux/IAA protein 3%2C Aux/IAA protein 31;Note=Similar to Auxin-responsive protein (Aux/IAA) (Fragment).;Transcript_evidence=AK073361 (DDBJ%2C Best hit);ORF_evidence=P0C133 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Aux/IAA-ARF-dimerisation (IPR011525);NIAS_FLcDNA=J033027E22;Oryzabase=10523;Expression=AK073361;TENOR=Os12t0601400-01;KEGG=Os12t0601400-01
Chr12	irgsp1_rep	five_prime_UTR	25325555	25325678	.	+	.	Parent=Os12t0601400-01
Chr12	irgsp1_rep	CDS	25325679	25325830	.	+	0	Parent=Os12t0601400-01
Chr12	irgsp1_rep	CDS	25325929	25326291	.	+	1	Parent=Os12t0601400-01
Chr12	irgsp1_rep	CDS	25326588	25326666	.	+	1	Parent=Os12t0601400-01
Chr12	irgsp1_rep	three_prime_UTR	25326667	25327111	.	+	.	Parent=Os12t0601400-01
Chr12	irgsp1_rep	mRNA	25327128	25329069	.	-	.	ID=Os12t0601500-01;Name=Os12t0601500-01;Locus_id=Os12g0601500;Note=Conserved hypothetical protein.;Transcript_evidence=AK242321 (DDBJ%2C Best hit);ORF_evidence=NP_001177049.1 (RefSeq);NIAS_FLcDNA=J075196I22;TENOR=Os12t0601500-01;KEGG=Os12t0601500-01
Chr12	irgsp1_rep	five_prime_UTR	25328905	25329069	.	-	.	Parent=Os12t0601500-01
Chr12	irgsp1_rep	CDS	25328641	25328904	.	-	0	Parent=Os12t0601500-01
Chr12	irgsp1_rep	three_prime_UTR	25327128	25328640	.	-	.	Parent=Os12t0601500-01
Chr12	irgsp1_rep	mRNA	25332774	25336537	.	+	.	ID=Os12t0601800-01;Name=Os12t0601800-01;Locus_id=Os12g0601800;CGSNL Gene Symbol=BZIP88;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 88;Oryzabase Gene Symbol Synonym(s)=OsbZIP88;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 88;Note=Similar to BZIP transcription factor family protein%2C expressed.;Transcript_evidence=AK287981 (DDBJ%2C Best hit);ORF_evidence=Q2QMJ7 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616),Basic leucine-zipper%2C C-terminal (IPR020983);NIAS_FLcDNA=J075085P10;Oryzabase=10166;TENOR=Os12t0601800-01;KEGG=Os12t0601800-01
Chr12	irgsp1_rep	five_prime_UTR	25332774	25332898	.	+	.	Parent=Os12t0601800-01
Chr12	irgsp1_rep	CDS	25332899	25332913	.	+	0	Parent=Os12t0601800-01
Chr12	irgsp1_rep	CDS	25333636	25333723	.	+	0	Parent=Os12t0601800-01
Chr12	irgsp1_rep	CDS	25334250	25334403	.	+	2	Parent=Os12t0601800-01
Chr12	irgsp1_rep	CDS	25334595	25334670	.	+	1	Parent=Os12t0601800-01
Chr12	irgsp1_rep	CDS	25334749	25334874	.	+	0	Parent=Os12t0601800-01
Chr12	irgsp1_rep	CDS	25335799	25336143	.	+	0	Parent=Os12t0601800-01
Chr12	irgsp1_rep	three_prime_UTR	25336144	25336208	.	+	.	Parent=Os12t0601800-01
Chr12	irgsp1_rep	three_prime_UTR	25336425	25336537	.	+	.	Parent=Os12t0601800-01
Chr12	irgsp1_rep	mRNA	25345377	25346850	.	+	.	ID=Os12t0602200-01;Name=Os12t0602200-01;Locus_id=Os12g0602200;Note=Conserved hypothetical protein.;Transcript_evidence=AK119494 (DDBJ%2C Best hit);ORF_evidence=NP_001059593.2 (RefSeq);NIAS_FLcDNA=001-134-D10;TENOR=Os12t0602200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	25345377	25346083	.	+	.	Parent=Os12t0602200-01
Chr12	irgsp1_rep	CDS	25346084	25346230	.	+	0	Parent=Os12t0602200-01
Chr12	irgsp1_rep	three_prime_UTR	25346231	25346850	.	+	.	Parent=Os12t0602200-01
Chr12	irgsp1_rep	mRNA	25415414	25418738	.	-	.	ID=Os12t0603300-01;Name=Os12t0603300-01;Locus_id=Os12g0603300;CGSNL Gene Symbol=ERF112;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 112;Oryzabase Gene Symbol Synonym(s)=OsERF#112%2C OsERF112%2C AP2/EREBP#009%2C AP2/EREBP9;Oryzabase Gene Name Synonym(s)=ethylene response factor 112%2C APETALA2/ethylene-responsive element binding protein 9;Note=Similar to AP2 domain containing protein%2C expressed.;Transcript_evidence=AK242027 (DDBJ%2C Best hit);ORF_evidence=Q2QMI3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J075115C05;Oryzabase=10608;TENOR=Os12t0603300-01;KEGG=Os12t0603300-01
Chr12	irgsp1_rep	five_prime_UTR	25418591	25418738	.	-	.	Parent=Os12t0603300-01
Chr12	irgsp1_rep	CDS	25418281	25418590	.	-	0	Parent=Os12t0603300-01
Chr12	irgsp1_rep	CDS	25415562	25416223	.	-	2	Parent=Os12t0603300-01
Chr12	irgsp1_rep	three_prime_UTR	25415414	25415561	.	-	.	Parent=Os12t0603300-01
Chr12	irgsp1_rep	mRNA	25414541	25418706	.	-	.	ID=Os12t0603300-02;Name=Os12t0603300-02;Locus_id=Os12g0603300;CGSNL Gene Symbol=ERF112;CGSNL Gene Name=ETHYLENE RESPONSE FACTOR 112;Oryzabase Gene Symbol Synonym(s)=OsERF#112%2C OsERF112%2C AP2/EREBP#009%2C AP2/EREBP9;Oryzabase Gene Name Synonym(s)=ethylene response factor 112%2C APETALA2/ethylene-responsive element binding protein 9;Note=Similar to AP2 domain containing protein%2C expressed.;Transcript_evidence=AK287544 (DDBJ%2C Best hit);ORF_evidence=Q2QMI3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (IPR001471),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=J065016L10;Oryzabase=10608;TENOR=Os12t0603300-02;KEGG=Os12t0603300-02
Chr12	irgsp1_rep	five_prime_UTR	25418591	25418706	.	-	.	Parent=Os12t0603300-02
Chr12	irgsp1_rep	CDS	25418281	25418590	.	-	0	Parent=Os12t0603300-02
Chr12	irgsp1_rep	CDS	25415562	25416223	.	-	2	Parent=Os12t0603300-02
Chr12	irgsp1_rep	three_prime_UTR	25414541	25415561	.	-	.	Parent=Os12t0603300-02
Chr12	irgsp1_rep	mRNA	25444907	25446226	.	-	.	ID=Os12t0603700-00;Name=Os12t0603700-00;Locus_id=Os12g0603700;CGSNL Gene Symbol=CIPK04;CGSNL Gene Name=CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 4;Oryzabase Gene Symbol Synonym(s)=OsCIPK04%2C CIPK4%2C OsCIPK4;Oryzabase Gene Name Synonym(s)=CBL-interacting protein kinase 4;Note=Similar to CBL-interacting protein kinase 4.;Transcript_evidence=Q2QMI0 (UniProt);ORF_evidence=Q2QMI0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=7391;TENOR=Os12t0603700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	25444907	25446226	.	-	0	Parent=Os12t0603700-00
Chr12	irgsp1_rep	mRNA	25462616	25463501	.	+	.	ID=Os12t0603800-00;Name=Os12t0603800-00;Locus_id=Os12g0603800;CGSNL Gene Symbol=CML5;CGSNL Gene Name=CALMODULIN-LIKE PROTEIN 5;Oryzabase Gene Symbol Synonym(s)=OsCML5;Oryzabase Gene Name Synonym(s)=calmodulin-like protein 5;Note=Similar to Calmodulin NtCaM13.;Transcript_evidence=AB060552 (DDBJ%2C Best hit);ORF_evidence=Q948R0 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=Calcium-binding EF-hand (IPR002048),EF-hand-like domain (IPR011992),EF-Hand 1%2C calcium-binding site (IPR018247),EF-hand (IPR018248),EF-HAND 2 (IPR018249);Oryzabase=10517;Expression=AB060552;TENOR=Os12t0603800-00;KEGG=Os12t0603800-00
Chr12	irgsp1_rep	five_prime_UTR	25462616	25462709	.	+	.	Parent=Os12t0603800-00
Chr12	irgsp1_rep	CDS	25462710	25463210	.	+	0	Parent=Os12t0603800-00
Chr12	irgsp1_rep	three_prime_UTR	25463211	25463501	.	+	.	Parent=Os12t0603800-00
Chr12	irgsp1_rep	mRNA	25480527	25483216	.	+	.	ID=Os12t0604000-02;Name=Os12t0604000-02;Locus_id=Os12g0604000;Note=Non-protein coding transcript.;Transcript_evidence=AK067077 (DDBJ%2C Best hit),AK067588 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J013091G16,J013112K12;TENOR=Os12t0604000-02
Chr12	irgsp1_rep	exon	25480527	25483216	.	+	.	Parent=Os12t0604000-02
Chr12	irgsp1_rep	mRNA	25484971	25492672	.	-	.	ID=Os12t0604200-00;Name=Os12t0604200-00;Locus_id=Os12g0604200;Note=Similar to phosphoinositide binding.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_188920.1 (RefSeq);InterPro=Domain of unknown function DUF828 (IPR008546),Pleckstrin-like%2C plant (IPR013666);TENOR=Os12t0604200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	25492550	25492672	.	-	0	Parent=Os12t0604200-00
Chr12	irgsp1_rep	CDS	25489065	25489467	.	-	0	Parent=Os12t0604200-00
Chr12	irgsp1_rep	CDS	25488679	25488984	.	-	2	Parent=Os12t0604200-00
Chr12	irgsp1_rep	CDS	25488541	25488590	.	-	2	Parent=Os12t0604200-00
Chr12	irgsp1_rep	CDS	25488377	25488434	.	-	0	Parent=Os12t0604200-00
Chr12	irgsp1_rep	CDS	25485224	25485350	.	-	2	Parent=Os12t0604200-00
Chr12	irgsp1_rep	CDS	25484971	25485019	.	-	1	Parent=Os12t0604200-00
Chr12	irgsp1_rep	mRNA	25487738	25493739	.	+	.	ID=Os12t0604300-01;Name=Os12t0604300-01;Locus_id=Os12g0604300;Note=Hypothetical gene.;Transcript_evidence=AK241135 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065098L17;TENOR=Os12t0604300-01
Chr12	irgsp1_rep	five_prime_UTR	25487738	25488251	.	+	.	Parent=Os12t0604300-01
Chr12	irgsp1_rep	five_prime_UTR	25488377	25488434	.	+	.	Parent=Os12t0604300-01
Chr12	irgsp1_rep	five_prime_UTR	25488541	25488590	.	+	.	Parent=Os12t0604300-01
Chr12	irgsp1_rep	five_prime_UTR	25488679	25488896	.	+	.	Parent=Os12t0604300-01
Chr12	irgsp1_rep	CDS	25488897	25488984	.	+	0	Parent=Os12t0604300-01
Chr12	irgsp1_rep	CDS	25489065	25489467	.	+	2	Parent=Os12t0604300-01
Chr12	irgsp1_rep	CDS	25492550	25492663	.	+	1	Parent=Os12t0604300-01
Chr12	irgsp1_rep	CDS	25493386	25493739	.	+	1	Parent=Os12t0604300-01
Chr12	irgsp1_rep	mRNA	25505322	25506810	.	+	.	ID=Os12t0604500-00;Name=Os12t0604500-00;Locus_id=Os12g0604500;Note=IQ motif%2C EF-hand binding site domain containing protein.;Transcript_evidence=AK372379 (DDBJ);ORF_evidence=NP_001177052.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);TENOR=Os12t0604500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	25505322	25505678	.	+	0	Parent=Os12t0604500-00
Chr12	irgsp1_rep	CDS	25505760	25506011	.	+	0	Parent=Os12t0604500-00
Chr12	irgsp1_rep	CDS	25506079	25506810	.	+	0	Parent=Os12t0604500-00
Chr12	irgsp1_rep	mRNA	25508619	25516929	.	+	.	ID=Os12t0604600-01;Name=Os12t0604600-01;Locus_id=Os12g0604600;Note=Similar to GTP-binding protein-like%3B root hair defective 3 protein-like.;Transcript_evidence=AK070939 (DDBJ%2C Best hit);ORF_evidence=NP_199329.1 (RefSeq);GO=Molecular Function: hydrolase activity%2C acting on acid anhydrides (GO:0016817);InterPro=Root hair defective 3 GTP-binding (IPR008803);NIAS_FLcDNA=J023069K05;Expression=AK070939;TENOR=Os12t0604600-01;KEGG=Os12t0604600-01
Chr12	irgsp1_rep	five_prime_UTR	25508619	25508818	.	+	.	Parent=Os12t0604600-01
Chr12	irgsp1_rep	CDS	25508819	25508972	.	+	0	Parent=Os12t0604600-01
Chr12	irgsp1_rep	CDS	25509910	25509976	.	+	2	Parent=Os12t0604600-01
Chr12	irgsp1_rep	CDS	25510215	25510317	.	+	1	Parent=Os12t0604600-01
Chr12	irgsp1_rep	CDS	25510834	25510904	.	+	0	Parent=Os12t0604600-01
Chr12	irgsp1_rep	CDS	25511038	25511101	.	+	1	Parent=Os12t0604600-01
Chr12	irgsp1_rep	CDS	25511186	25511251	.	+	0	Parent=Os12t0604600-01
Chr12	irgsp1_rep	CDS	25511380	25511427	.	+	0	Parent=Os12t0604600-01
Chr12	irgsp1_rep	CDS	25511511	25511573	.	+	0	Parent=Os12t0604600-01
Chr12	irgsp1_rep	CDS	25511659	25511715	.	+	0	Parent=Os12t0604600-01
Chr12	irgsp1_rep	CDS	25511834	25511992	.	+	0	Parent=Os12t0604600-01
Chr12	irgsp1_rep	CDS	25512366	25512434	.	+	0	Parent=Os12t0604600-01
Chr12	irgsp1_rep	CDS	25512510	25512601	.	+	0	Parent=Os12t0604600-01
Chr12	irgsp1_rep	CDS	25512978	25513056	.	+	1	Parent=Os12t0604600-01
Chr12	irgsp1_rep	CDS	25513322	25513487	.	+	0	Parent=Os12t0604600-01
Chr12	irgsp1_rep	CDS	25513879	25514003	.	+	2	Parent=Os12t0604600-01
Chr12	irgsp1_rep	CDS	25514136	25514398	.	+	0	Parent=Os12t0604600-01
Chr12	irgsp1_rep	CDS	25514478	25514574	.	+	1	Parent=Os12t0604600-01
Chr12	irgsp1_rep	CDS	25514670	25514831	.	+	0	Parent=Os12t0604600-01
Chr12	irgsp1_rep	CDS	25514919	25515023	.	+	0	Parent=Os12t0604600-01
Chr12	irgsp1_rep	CDS	25515165	25515259	.	+	0	Parent=Os12t0604600-01
Chr12	irgsp1_rep	CDS	25515347	25515443	.	+	1	Parent=Os12t0604600-01
Chr12	irgsp1_rep	CDS	25516247	25516609	.	+	0	Parent=Os12t0604600-01
Chr12	irgsp1_rep	three_prime_UTR	25516610	25516929	.	+	.	Parent=Os12t0604600-01
Chr12	irgsp1_rep	mRNA	25516219	25516852	.	-	.	ID=Os12t0604650-00;Name=Os12t0604650-00;Locus_id=Os12g0604650;Note=Non-protein coding transcript.;Transcript_evidence=EU948222 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0604650-00
Chr12	irgsp1_rep	exon	25516219	25516852	.	-	.	Parent=Os12t0604650-00
Chr12	irgsp1_rep	mRNA	25518232	25522285	.	-	.	ID=Os12t0604700-01;Name=Os12t0604700-01;Locus_id=Os12g0604700;Oryzabase Gene Symbol Synonym(s)=OsNek2;Oryzabase Gene Name Synonym(s)=NIMA-related kinase 2;Note=Similar to LSTK-1-like kinase.;Transcript_evidence=AK072382 (DDBJ%2C Best hit);ORF_evidence=Q2QMH1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J023075D08;Oryzabase=9926;Expression=AK072382;TENOR=Os12t0604700-01;KEGG=Os12t0604700-01 (EC:2.7.11.1)
Chr12	irgsp1_rep	five_prime_UTR	25522013	25522285	.	-	.	Parent=Os12t0604700-01
Chr12	irgsp1_rep	CDS	25521927	25522012	.	-	0	Parent=Os12t0604700-01
Chr12	irgsp1_rep	CDS	25521733	25521799	.	-	1	Parent=Os12t0604700-01
Chr12	irgsp1_rep	CDS	25521397	25521462	.	-	0	Parent=Os12t0604700-01
Chr12	irgsp1_rep	CDS	25521259	25521305	.	-	0	Parent=Os12t0604700-01
Chr12	irgsp1_rep	CDS	25521122	25521167	.	-	1	Parent=Os12t0604700-01
Chr12	irgsp1_rep	CDS	25520943	25521023	.	-	0	Parent=Os12t0604700-01
Chr12	irgsp1_rep	CDS	25520804	25520846	.	-	0	Parent=Os12t0604700-01
Chr12	irgsp1_rep	CDS	25520664	25520713	.	-	2	Parent=Os12t0604700-01
Chr12	irgsp1_rep	CDS	25520505	25520586	.	-	0	Parent=Os12t0604700-01
Chr12	irgsp1_rep	CDS	25520367	25520416	.	-	2	Parent=Os12t0604700-01
Chr12	irgsp1_rep	CDS	25520157	25520230	.	-	0	Parent=Os12t0604700-01
Chr12	irgsp1_rep	CDS	25520007	25520058	.	-	1	Parent=Os12t0604700-01
Chr12	irgsp1_rep	CDS	25519449	25519904	.	-	0	Parent=Os12t0604700-01
Chr12	irgsp1_rep	CDS	25518556	25519131	.	-	0	Parent=Os12t0604700-01
Chr12	irgsp1_rep	three_prime_UTR	25518232	25518555	.	-	.	Parent=Os12t0604700-01
Chr12	irgsp1_rep	mRNA	25518238	25520230	.	-	.	ID=Os12t0604700-02;Name=Os12t0604700-02;Locus_id=Os12g0604700;Oryzabase Gene Symbol Synonym(s)=OsNek2;Oryzabase Gene Name Synonym(s)=NIMA-related kinase 2;Note=Similar to cDNA clone:J023075D08%2C full insert sequence.;Transcript_evidence=AK101826 (DDBJ%2C Best hit);ORF_evidence=B7EKP8 (UniProt);GO=Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J033068B03;Oryzabase=9926;Expression=AK101826;TENOR=Os12t0604700-02;KEGG=Os12t0604700-02
Chr12	irgsp1_rep	CDS	25520157	25520230	.	-	0	Parent=Os12t0604700-02
Chr12	irgsp1_rep	CDS	25520007	25520058	.	-	1	Parent=Os12t0604700-02
Chr12	irgsp1_rep	CDS	25519449	25519904	.	-	0	Parent=Os12t0604700-02
Chr12	irgsp1_rep	CDS	25518556	25519131	.	-	0	Parent=Os12t0604700-02
Chr12	irgsp1_rep	three_prime_UTR	25518238	25518555	.	-	.	Parent=Os12t0604700-02
Chr12	irgsp1_rep	mRNA	25528386	25532732	.	-	.	ID=Os12t0604800-01;Name=Os12t0604800-01;Locus_id=Os12g0604800;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK073324 (DDBJ%2C Best hit);ORF_evidence=NP_171915.1 (RefSeq);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Tetratricopeptide TPR-1 (IPR001440),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide repeat (IPR019734);NIAS_FLcDNA=J033030G12;Expression=AK073324;TENOR=Os12t0604800-01;KEGG=Os12t0604800-01
Chr12	irgsp1_rep	five_prime_UTR	25532642	25532732	.	-	.	Parent=Os12t0604800-01
Chr12	irgsp1_rep	CDS	25532487	25532641	.	-	0	Parent=Os12t0604800-01
Chr12	irgsp1_rep	CDS	25531133	25531226	.	-	1	Parent=Os12t0604800-01
Chr12	irgsp1_rep	CDS	25530988	25531038	.	-	0	Parent=Os12t0604800-01
Chr12	irgsp1_rep	CDS	25530246	25530419	.	-	0	Parent=Os12t0604800-01
Chr12	irgsp1_rep	CDS	25529730	25529909	.	-	0	Parent=Os12t0604800-01
Chr12	irgsp1_rep	CDS	25529389	25529508	.	-	0	Parent=Os12t0604800-01
Chr12	irgsp1_rep	CDS	25529060	25529193	.	-	0	Parent=Os12t0604800-01
Chr12	irgsp1_rep	CDS	25528613	25528679	.	-	1	Parent=Os12t0604800-01
Chr12	irgsp1_rep	three_prime_UTR	25528386	25528612	.	-	.	Parent=Os12t0604800-01
Chr12	irgsp1_rep	mRNA	25536142	25538883	.	-	.	ID=Os12t0605100-01;Name=Os12t0605100-01;Locus_id=Os12g0605100;Note=Conserved hypothetical protein.;Transcript_evidence=AK106406 (DDBJ%2C Best hit);ORF_evidence=Q2QMG9 (UniProt);NIAS_FLcDNA=002-102-H03;Expression=AK106406;TENOR=Os12t0605100-01;KEGG=Os12t0605100-01
Chr12	irgsp1_rep	five_prime_UTR	25538882	25538883	.	-	.	Parent=Os12t0605100-01
Chr12	irgsp1_rep	CDS	25538339	25538881	.	-	0	Parent=Os12t0605100-01
Chr12	irgsp1_rep	CDS	25537118	25537640	.	-	0	Parent=Os12t0605100-01
Chr12	irgsp1_rep	CDS	25536358	25536710	.	-	2	Parent=Os12t0605100-01
Chr12	irgsp1_rep	three_prime_UTR	25536142	25536357	.	-	.	Parent=Os12t0605100-01
Chr12	irgsp1_rep	mRNA	25541170	25544911	.	-	.	ID=Os12t0605200-01;Name=Os12t0605200-01;Locus_id=Os12g0605200;Note=KIP1-like domain containing protein.;Transcript_evidence=AK102398 (DDBJ%2C Best hit);ORF_evidence=Q2QMG9 (UniProt);InterPro=KIP1-like (IPR011684);NIAS_FLcDNA=J033092H23;TENOR=Os12t0605200-01
Chr12	irgsp1_rep	five_prime_UTR	25544639	25544911	.	-	.	Parent=Os12t0605200-01
Chr12	irgsp1_rep	five_prime_UTR	25543042	25543165	.	-	.	Parent=Os12t0605200-01
Chr12	irgsp1_rep	CDS	25542939	25543041	.	-	0	Parent=Os12t0605200-01
Chr12	irgsp1_rep	CDS	25541607	25541954	.	-	2	Parent=Os12t0605200-01
Chr12	irgsp1_rep	CDS	25541170	25541517	.	-	2	Parent=Os12t0605200-01
Chr12	irgsp1_rep	mRNA	25553547	25557389	.	-	.	ID=Os12t0605300-01;Name=Os12t0605300-01;Locus_id=Os12g0605300;Note=Tesmin/TSO1-like%2C CXC domain containing protein.;Transcript_evidence=AK108664 (DDBJ%2C Best hit);ORF_evidence=NP_001150621.1 (RefSeq);InterPro=Tesmin/TSO1-like%2C CXC (IPR005172);NIAS_FLcDNA=002-148-G02;Expression=AK108664;TENOR=Os12t0605300-01;KEGG=Os12t0605300-01
Chr12	irgsp1_rep	five_prime_UTR	25557307	25557389	.	-	.	Parent=Os12t0605300-01
Chr12	irgsp1_rep	CDS	25557035	25557306	.	-	0	Parent=Os12t0605300-01
Chr12	irgsp1_rep	CDS	25556873	25556938	.	-	1	Parent=Os12t0605300-01
Chr12	irgsp1_rep	CDS	25555932	25556082	.	-	1	Parent=Os12t0605300-01
Chr12	irgsp1_rep	CDS	25555755	25555847	.	-	0	Parent=Os12t0605300-01
Chr12	irgsp1_rep	CDS	25555608	25555671	.	-	0	Parent=Os12t0605300-01
Chr12	irgsp1_rep	CDS	25553712	25554289	.	-	2	Parent=Os12t0605300-01
Chr12	irgsp1_rep	three_prime_UTR	25553547	25553711	.	-	.	Parent=Os12t0605300-01
Chr12	irgsp1_rep	mRNA	25558869	25561096	.	-	.	ID=Os12t0605400-01;Name=Os12t0605400-01;Locus_id=Os12g0605400;Oryzabase Gene Symbol Synonym(s)=OsCROC-1%2C CROC-1%2C CROC1%2C OsCROC1%2C OsUEV1B%2C UEV1B;Oryzabase Gene Name Synonym(s)=Ubc-E2 variant 1B;Note=Similar to CROC-1-like protein (Fragment).;Transcript_evidence=AK068060 (DDBJ%2C Best hit);ORF_evidence=B6SK03 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135);NIAS_FLcDNA=J013130B07;Oryzabase=18116;Expression=AK068060;TENOR=Os12t0605400-01;KEGG=Os12t0605400-01
Chr12	irgsp1_rep	five_prime_UTR	25560897	25561096	.	-	.	Parent=Os12t0605400-01
Chr12	irgsp1_rep	CDS	25560863	25560896	.	-	0	Parent=Os12t0605400-01
Chr12	irgsp1_rep	CDS	25559632	25559771	.	-	2	Parent=Os12t0605400-01
Chr12	irgsp1_rep	CDS	25559383	25559508	.	-	0	Parent=Os12t0605400-01
Chr12	irgsp1_rep	CDS	25559151	25559291	.	-	0	Parent=Os12t0605400-01
Chr12	irgsp1_rep	three_prime_UTR	25558869	25559150	.	-	.	Parent=Os12t0605400-01
Chr12	irgsp1_rep	mRNA	25561790	25569052	.	-	.	ID=Os12t0605500-01;Name=Os12t0605500-01;Locus_id=Os12g0605500;Note=Tesmin/TSO1-like%2C CXC domain containing protein.;Transcript_evidence=AK073942 (DDBJ%2C Best hit);ORF_evidence=B8BMW2 (UniProt);InterPro=Tesmin/TSO1-like%2C CXC (IPR005172);NIAS_FLcDNA=J033075J10;Expression=AK073942;TENOR=Os12t0605500-01;KEGG=Os12t0605500-01
Chr12	irgsp1_rep	five_prime_UTR	25568835	25569052	.	-	.	Parent=Os12t0605500-01
Chr12	irgsp1_rep	CDS	25568784	25568834	.	-	0	Parent=Os12t0605500-01
Chr12	irgsp1_rep	CDS	25567228	25567397	.	-	0	Parent=Os12t0605500-01
Chr12	irgsp1_rep	CDS	25566434	25567139	.	-	1	Parent=Os12t0605500-01
Chr12	irgsp1_rep	CDS	25565710	25566116	.	-	0	Parent=Os12t0605500-01
Chr12	irgsp1_rep	CDS	25565556	25565627	.	-	1	Parent=Os12t0605500-01
Chr12	irgsp1_rep	CDS	25564016	25564193	.	-	1	Parent=Os12t0605500-01
Chr12	irgsp1_rep	CDS	25563841	25563936	.	-	0	Parent=Os12t0605500-01
Chr12	irgsp1_rep	CDS	25563682	25563748	.	-	0	Parent=Os12t0605500-01
Chr12	irgsp1_rep	CDS	25562891	25563059	.	-	2	Parent=Os12t0605500-01
Chr12	irgsp1_rep	CDS	25562426	25562792	.	-	1	Parent=Os12t0605500-01
Chr12	irgsp1_rep	three_prime_UTR	25562402	25562425	.	-	.	Parent=Os12t0605500-01
Chr12	irgsp1_rep	three_prime_UTR	25561790	25562299	.	-	.	Parent=Os12t0605500-01
Chr12	irgsp1_rep	mRNA	25576492	25581974	.	+	.	ID=Os12t0605800-01;Name=Os12t0605800-01;Locus_id=Os12g0605800;Oryzabase Gene Symbol Synonym(s)=OsL55;Oryzabase Gene Name Synonym(s)=3-methylcrotonyl CoA carboxylase biotin-containing subunit;Note=Similar to 3-methylcrotonyl CoA carboxylase biotin-containing subunit (Fragment).;Transcript_evidence=AK121511 (DDBJ%2C Best hit);ORF_evidence=Q2QMG2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: biotin carboxylase activity (GO:0004075),Molecular Function: ATP binding (GO:0005524),Molecular Function: ligase activity (GO:0016874),Molecular Function: metal ion binding (GO:0046872);InterPro=Biotin/lipoyl attachment (IPR000089),Biotin-binding site (IPR001882),Carbamoyl-phosphate synthetase%2C large subunit%2C ATP-binding (IPR005479),Carbamoyl-phosphate synthase%2C large subunit%2C N-terminal (IPR005481),Biotin carboxylase%2C C-terminal (IPR005482),Single hybrid motif (IPR011053),Rudiment single hybrid motif (IPR011054),ATP-grasp fold (IPR011761),Biotin carboxylation domain (IPR011764),ATP-grasp fold%2C subdomain 1 (IPR013815),ATP-grasp fold%2C subdomain 2 (IPR013816),Pre-ATP-grasp fold (IPR013817),PreATP-grasp-like fold (IPR016185);NIAS_FLcDNA=J033023O13;Oryzabase=13868;Expression=AK121511;TENOR=Os12t0605800-01;KEGG=Os12t0605800-01 (EC:6.4.1.4)
Chr12	irgsp1_rep	five_prime_UTR	25576492	25576598	.	+	.	Parent=Os12t0605800-01
Chr12	irgsp1_rep	CDS	25576599	25576937	.	+	0	Parent=Os12t0605800-01
Chr12	irgsp1_rep	CDS	25577421	25577542	.	+	0	Parent=Os12t0605800-01
Chr12	irgsp1_rep	CDS	25577642	25577789	.	+	1	Parent=Os12t0605800-01
Chr12	irgsp1_rep	CDS	25578080	25578217	.	+	0	Parent=Os12t0605800-01
Chr12	irgsp1_rep	CDS	25578328	25578423	.	+	0	Parent=Os12t0605800-01
Chr12	irgsp1_rep	CDS	25578505	25578564	.	+	0	Parent=Os12t0605800-01
Chr12	irgsp1_rep	CDS	25578699	25578791	.	+	0	Parent=Os12t0605800-01
Chr12	irgsp1_rep	CDS	25579200	25579311	.	+	0	Parent=Os12t0605800-01
Chr12	irgsp1_rep	CDS	25579555	25579659	.	+	2	Parent=Os12t0605800-01
Chr12	irgsp1_rep	CDS	25579738	25579874	.	+	2	Parent=Os12t0605800-01
Chr12	irgsp1_rep	CDS	25580211	25580436	.	+	0	Parent=Os12t0605800-01
Chr12	irgsp1_rep	CDS	25580518	25580681	.	+	2	Parent=Os12t0605800-01
Chr12	irgsp1_rep	CDS	25580807	25580923	.	+	0	Parent=Os12t0605800-01
Chr12	irgsp1_rep	CDS	25581021	25581263	.	+	0	Parent=Os12t0605800-01
Chr12	irgsp1_rep	CDS	25581358	25581453	.	+	0	Parent=Os12t0605800-01
Chr12	irgsp1_rep	CDS	25581669	25581686	.	+	0	Parent=Os12t0605800-01
Chr12	irgsp1_rep	three_prime_UTR	25581687	25581974	.	+	.	Parent=Os12t0605800-01
Chr12	irgsp1_rep	mRNA	25576570	25581974	.	+	.	ID=Os12t0605800-02;Name=Os12t0605800-02;Locus_id=Os12g0605800;Oryzabase Gene Symbol Synonym(s)=OsL55;Oryzabase Gene Name Synonym(s)=3-methylcrotonyl CoA carboxylase biotin-containing subunit;Note=Similar to Methylcrotonoyl-CoA carboxylase subunit alpha%2C mitochondrial.;Transcript_evidence=AK065165 (DDBJ%2C Best hit);ORF_evidence=Q2QMG2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: biotin carboxylase activity (GO:0004075),Molecular Function: ATP binding (GO:0005524),Molecular Function: ligase activity (GO:0016874),Molecular Function: metal ion binding (GO:0046872);InterPro=Carbamoyl-phosphate synthetase%2C large subunit%2C ATP-binding (IPR005479),Carbamoyl-phosphate synthase%2C large subunit%2C N-terminal (IPR005481),ATP-grasp fold (IPR011761),Biotin carboxylation domain (IPR011764),ATP-grasp fold%2C subdomain 1 (IPR013815),ATP-grasp fold%2C subdomain 2 (IPR013816),Pre-ATP-grasp fold (IPR013817),PreATP-grasp-like fold (IPR016185);NIAS_FLcDNA=J013002C11;Oryzabase=13868;Expression=AK065165;TENOR=Os12t0605800-02;KEGG=Os12t0605800-02 (EC:6.4.1.4)
Chr12	irgsp1_rep	five_prime_UTR	25576570	25576598	.	+	.	Parent=Os12t0605800-02
Chr12	irgsp1_rep	CDS	25576599	25576937	.	+	0	Parent=Os12t0605800-02
Chr12	irgsp1_rep	CDS	25577421	25577542	.	+	0	Parent=Os12t0605800-02
Chr12	irgsp1_rep	CDS	25577642	25577789	.	+	1	Parent=Os12t0605800-02
Chr12	irgsp1_rep	CDS	25578080	25578217	.	+	0	Parent=Os12t0605800-02
Chr12	irgsp1_rep	CDS	25578328	25578465	.	+	0	Parent=Os12t0605800-02
Chr12	irgsp1_rep	three_prime_UTR	25578466	25578564	.	+	.	Parent=Os12t0605800-02
Chr12	irgsp1_rep	three_prime_UTR	25578703	25578791	.	+	.	Parent=Os12t0605800-02
Chr12	irgsp1_rep	three_prime_UTR	25579200	25579311	.	+	.	Parent=Os12t0605800-02
Chr12	irgsp1_rep	three_prime_UTR	25579555	25579659	.	+	.	Parent=Os12t0605800-02
Chr12	irgsp1_rep	three_prime_UTR	25579738	25579874	.	+	.	Parent=Os12t0605800-02
Chr12	irgsp1_rep	three_prime_UTR	25580211	25580681	.	+	.	Parent=Os12t0605800-02
Chr12	irgsp1_rep	three_prime_UTR	25580807	25580923	.	+	.	Parent=Os12t0605800-02
Chr12	irgsp1_rep	three_prime_UTR	25581021	25581263	.	+	.	Parent=Os12t0605800-02
Chr12	irgsp1_rep	three_prime_UTR	25581358	25581453	.	+	.	Parent=Os12t0605800-02
Chr12	irgsp1_rep	three_prime_UTR	25581669	25581974	.	+	.	Parent=Os12t0605800-02
Chr12	irgsp1_rep	mRNA	25578071	25581973	.	+	.	ID=Os12t0605800-03;Name=Os12t0605800-03;Locus_id=Os12g0605800;Oryzabase Gene Symbol Synonym(s)=OsL55;Oryzabase Gene Name Synonym(s)=3-methylcrotonyl CoA carboxylase biotin-containing subunit;Note=Similar to Methylcrotonoyl-CoA carboxylase subunit alpha%2C mitochondrial.;Transcript_evidence=AK061906 (DDBJ%2C Best hit);ORF_evidence=Q2QMG2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824),Molecular Function: biotin carboxylase activity (GO:0004075),Molecular Function: ATP binding (GO:0005524),Molecular Function: ligase activity (GO:0016874),Molecular Function: metal ion binding (GO:0046872);InterPro=Biotin/lipoyl attachment (IPR000089),Biotin-binding site (IPR001882),Carbamoyl-phosphate synthetase%2C large subunit%2C ATP-binding (IPR005479),Biotin carboxylase%2C C-terminal (IPR005482),Single hybrid motif (IPR011053),Rudiment single hybrid motif (IPR011054),ATP-grasp fold (IPR011761),Biotin carboxylation domain (IPR011764),ATP-grasp fold%2C subdomain 1 (IPR013815),ATP-grasp fold%2C subdomain 2 (IPR013816);NIAS_FLcDNA=001-041-H10;Oryzabase=13868;Expression=AK061906;TENOR=Os12t0605800-03;KEGG=Os12t0605800-03 (EC:6.4.1.4)
Chr12	irgsp1_rep	CDS	25578071	25578217	.	+	0	Parent=Os12t0605800-03
Chr12	irgsp1_rep	CDS	25578328	25578423	.	+	0	Parent=Os12t0605800-03
Chr12	irgsp1_rep	CDS	25578505	25578564	.	+	0	Parent=Os12t0605800-03
Chr12	irgsp1_rep	CDS	25578699	25578791	.	+	0	Parent=Os12t0605800-03
Chr12	irgsp1_rep	CDS	25579200	25579311	.	+	0	Parent=Os12t0605800-03
Chr12	irgsp1_rep	CDS	25579555	25579659	.	+	2	Parent=Os12t0605800-03
Chr12	irgsp1_rep	CDS	25579738	25579874	.	+	2	Parent=Os12t0605800-03
Chr12	irgsp1_rep	CDS	25580211	25580436	.	+	0	Parent=Os12t0605800-03
Chr12	irgsp1_rep	CDS	25580518	25580681	.	+	2	Parent=Os12t0605800-03
Chr12	irgsp1_rep	CDS	25580807	25580923	.	+	0	Parent=Os12t0605800-03
Chr12	irgsp1_rep	CDS	25581021	25581263	.	+	0	Parent=Os12t0605800-03
Chr12	irgsp1_rep	CDS	25581358	25581453	.	+	0	Parent=Os12t0605800-03
Chr12	irgsp1_rep	CDS	25581669	25581686	.	+	0	Parent=Os12t0605800-03
Chr12	irgsp1_rep	three_prime_UTR	25581687	25581973	.	+	.	Parent=Os12t0605800-03
Chr12	irgsp1_rep	mRNA	25576556	25581486	.	-	.	ID=Os12t0605850-00;Name=Os12t0605850-00;Locus_id=Os12g0605850;Note=Hypothetical protein.;Transcript_evidence=tplb0056h22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0605850-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	25581356	25581486	.	-	.	Parent=Os12t0605850-00
Chr12	irgsp1_rep	five_prime_UTR	25581033	25581261	.	-	.	Parent=Os12t0605850-00
Chr12	irgsp1_rep	five_prime_UTR	25580797	25580935	.	-	.	Parent=Os12t0605850-00
Chr12	irgsp1_rep	five_prime_UTR	25580530	25580671	.	-	.	Parent=Os12t0605850-00
Chr12	irgsp1_rep	five_prime_UTR	25580209	25580454	.	-	.	Parent=Os12t0605850-00
Chr12	irgsp1_rep	five_prime_UTR	25579724	25579867	.	-	.	Parent=Os12t0605850-00
Chr12	irgsp1_rep	five_prime_UTR	25579558	25579645	.	-	.	Parent=Os12t0605850-00
Chr12	irgsp1_rep	five_prime_UTR	25579207	25579317	.	-	.	Parent=Os12t0605850-00
Chr12	irgsp1_rep	five_prime_UTR	25578676	25578794	.	-	.	Parent=Os12t0605850-00
Chr12	irgsp1_rep	five_prime_UTR	25578496	25578544	.	-	.	Parent=Os12t0605850-00
Chr12	irgsp1_rep	five_prime_UTR	25578329	25578415	.	-	.	Parent=Os12t0605850-00
Chr12	irgsp1_rep	five_prime_UTR	25578077	25578218	.	-	.	Parent=Os12t0605850-00
Chr12	irgsp1_rep	five_prime_UTR	25577697	25577786	.	-	.	Parent=Os12t0605850-00
Chr12	irgsp1_rep	CDS	25577640	25577696	.	-	0	Parent=Os12t0605850-00
Chr12	irgsp1_rep	CDS	25577430	25577540	.	-	0	Parent=Os12t0605850-00
Chr12	irgsp1_rep	CDS	25576680	25576943	.	-	0	Parent=Os12t0605850-00
Chr12	irgsp1_rep	three_prime_UTR	25576556	25576679	.	-	.	Parent=Os12t0605850-00
Chr12	irgsp1_rep	mRNA	25583204	25586395	.	+	.	ID=Os12t0605900-01;Name=Os12t0605900-01;Locus_id=Os12g0605900;Oryzabase Gene Symbol Synonym(s)=RMP3;Oryzabase Gene Name Synonym(s)=rice microspore-preferred 3;Note=Similar to Kinase like protein.;Transcript_evidence=AK109696 (DDBJ%2C Best hit);ORF_evidence=B4G1F0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=002-145-F01;Oryzabase=21545;Expression=AK109696;TENOR=Os12t0605900-01;KEGG=Os12t0605900-01
Chr12	irgsp1_rep	five_prime_UTR	25583204	25583365	.	+	.	Parent=Os12t0605900-01
Chr12	irgsp1_rep	CDS	25583366	25583675	.	+	0	Parent=Os12t0605900-01
Chr12	irgsp1_rep	CDS	25584441	25584562	.	+	2	Parent=Os12t0605900-01
Chr12	irgsp1_rep	CDS	25584796	25585022	.	+	0	Parent=Os12t0605900-01
Chr12	irgsp1_rep	CDS	25585107	25585284	.	+	1	Parent=Os12t0605900-01
Chr12	irgsp1_rep	CDS	25585453	25585596	.	+	0	Parent=Os12t0605900-01
Chr12	irgsp1_rep	CDS	25585847	25586068	.	+	0	Parent=Os12t0605900-01
Chr12	irgsp1_rep	three_prime_UTR	25586069	25586395	.	+	.	Parent=Os12t0605900-01
Chr12	irgsp1_rep	mRNA	25592586	25597136	.	+	.	ID=Os12t0606000-00;Name=Os12t0606000-00;Locus_id=Os12g0606000;Note=Similar to Protein kinase domain containing protein.;Transcript_evidence=AK353977 (DDBJ);ORF_evidence=Q2QMG0 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Gnk2-homologous domain (IPR002902),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);TENOR=Os12t0606000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	25592586	25593066	.	+	0	Parent=Os12t0606000-00
Chr12	irgsp1_rep	CDS	25593318	25593644	.	+	2	Parent=Os12t0606000-00
Chr12	irgsp1_rep	CDS	25595023	25597136	.	+	2	Parent=Os12t0606000-00
Chr12	irgsp1_rep	mRNA	25605994	25611594	.	+	.	ID=Os12t0606100-00;Name=Os12t0606100-00;Locus_id=Os12g0606100;Note=Hypothetical conserved gene.;Transcript_evidence=AK121782 (DDBJ%2C Secondary hit);ORF_evidence=Q2QMF8 (UniProt);GO=Biological Process: microtubule cytoskeleton organization (GO:0000226),Cellular Component: spindle pole (GO:0000922),Cellular Component: microtubule organizing center (GO:0005815);InterPro=Spc97/Spc98 (IPR007259);Expression=AK121782;TENOR=Os12t0606100-00;KEGG=Os12t0606100-00
Chr12	irgsp1_rep	five_prime_UTR	25605994	25605994	.	+	.	Parent=Os12t0606100-00
Chr12	irgsp1_rep	CDS	25605995	25606144	.	+	0	Parent=Os12t0606100-00
Chr12	irgsp1_rep	CDS	25606272	25606532	.	+	0	Parent=Os12t0606100-00
Chr12	irgsp1_rep	CDS	25606620	25606714	.	+	0	Parent=Os12t0606100-00
Chr12	irgsp1_rep	CDS	25607044	25607206	.	+	1	Parent=Os12t0606100-00
Chr12	irgsp1_rep	CDS	25607304	25607414	.	+	0	Parent=Os12t0606100-00
Chr12	irgsp1_rep	CDS	25608010	25609140	.	+	0	Parent=Os12t0606100-00
Chr12	irgsp1_rep	CDS	25609212	25609364	.	+	0	Parent=Os12t0606100-00
Chr12	irgsp1_rep	CDS	25609459	25609558	.	+	0	Parent=Os12t0606100-00
Chr12	irgsp1_rep	CDS	25609732	25609826	.	+	2	Parent=Os12t0606100-00
Chr12	irgsp1_rep	CDS	25609907	25610080	.	+	0	Parent=Os12t0606100-00
Chr12	irgsp1_rep	CDS	25610150	25610206	.	+	0	Parent=Os12t0606100-00
Chr12	irgsp1_rep	CDS	25610286	25610357	.	+	0	Parent=Os12t0606100-00
Chr12	irgsp1_rep	CDS	25610550	25610648	.	+	0	Parent=Os12t0606100-00
Chr12	irgsp1_rep	CDS	25610719	25610850	.	+	0	Parent=Os12t0606100-00
Chr12	irgsp1_rep	CDS	25610948	25611121	.	+	0	Parent=Os12t0606100-00
Chr12	irgsp1_rep	CDS	25611229	25611360	.	+	0	Parent=Os12t0606100-00
Chr12	irgsp1_rep	three_prime_UTR	25611361	25611594	.	+	.	Parent=Os12t0606100-00
Chr12	irgsp1_rep	mRNA	25622843	25628255	.	+	.	ID=Os12t0606600-01;Name=Os12t0606600-01;Locus_id=Os12g0606600;Oryzabase Gene Symbol Synonym(s)=OsSTA288;Note=DNA-binding HORMA domain containing protein.;Transcript_evidence=AK102167 (DDBJ%2C Best hit);ORF_evidence=B8BMW8 (UniProt);GO=Biological Process: mitosis (GO:0007067);InterPro=DNA-binding HORMA (IPR003511);NIAS_FLcDNA=J033086H12;Oryzabase=19541;TENOR=Os12t0606600-01;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	25622843	25622893	.	+	.	Parent=Os12t0606600-01
Chr12	irgsp1_rep	CDS	25622894	25622965	.	+	0	Parent=Os12t0606600-01
Chr12	irgsp1_rep	CDS	25624187	25624283	.	+	0	Parent=Os12t0606600-01
Chr12	irgsp1_rep	CDS	25624381	25624461	.	+	2	Parent=Os12t0606600-01
Chr12	irgsp1_rep	CDS	25624726	25624818	.	+	2	Parent=Os12t0606600-01
Chr12	irgsp1_rep	CDS	25624923	25625043	.	+	2	Parent=Os12t0606600-01
Chr12	irgsp1_rep	CDS	25625514	25625580	.	+	1	Parent=Os12t0606600-01
Chr12	irgsp1_rep	CDS	25625660	25625701	.	+	0	Parent=Os12t0606600-01
Chr12	irgsp1_rep	CDS	25625854	25625982	.	+	0	Parent=Os12t0606600-01
Chr12	irgsp1_rep	CDS	25626073	25626132	.	+	0	Parent=Os12t0606600-01
Chr12	irgsp1_rep	CDS	25626286	25626328	.	+	0	Parent=Os12t0606600-01
Chr12	irgsp1_rep	CDS	25626597	25626679	.	+	2	Parent=Os12t0606600-01
Chr12	irgsp1_rep	CDS	25626895	25627401	.	+	0	Parent=Os12t0606600-01
Chr12	irgsp1_rep	CDS	25627487	25627987	.	+	0	Parent=Os12t0606600-01
Chr12	irgsp1_rep	three_prime_UTR	25627988	25628255	.	+	.	Parent=Os12t0606600-01
Chr12	irgsp1_rep	mRNA	25637448	25638467	.	+	.	ID=Os12t0606900-01;Name=Os12t0606900-01;Locus_id=Os12g0606900;CGSNL Gene Symbol=OTS2;CGSNL Gene Name=OVERLY TOLERANT TO SALT2;Oryzabase Gene Symbol Synonym(s)=OsOTS2;Note=Similar to Ulp1 protease family%2C C-terminal catalytic domain containing protein%2C expressed.;Transcript_evidence=AK072659 (DDBJ%2C Best hit);ORF_evidence=Q2QME9 (UniProt);NIAS_FLcDNA=J023132J02;Oryzabase=20933;TENOR=Os12t0606900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	25637448	25637448	.	+	.	Parent=Os12t0606900-01
Chr12	irgsp1_rep	CDS	25637449	25638036	.	+	0	Parent=Os12t0606900-01
Chr12	irgsp1_rep	three_prime_UTR	25638037	25638467	.	+	.	Parent=Os12t0606900-01
Chr12	irgsp1_rep	mRNA	25641843	25645416	.	+	.	ID=Os12t0607000-01;Name=Os12t0607000-01;Locus_id=Os12g0607000;CGSNL Gene Symbol=HMT4;CGSNL Gene Name=HOMOCYSTEINE METHYLTRANSFERASE 4;Oryzabase Gene Symbol Synonym(s)=OsaHMT4%2C OsHMT4;Oryzabase Gene Name Synonym(s)=homocysteine methyltransferase 4;Note=Similar to homocysteine S-methyltransferase-2.;Transcript_evidence=AK103293 (DDBJ%2C Best hit);ORF_evidence=NP_001105012.1 (RefSeq);GO=Molecular Function: homocysteine S-methyltransferase activity (GO:0008898);InterPro=Homocysteine S-methyltransferase (IPR003726);NIAS_FLcDNA=J033125A08;Oryzabase=22913;Expression=AK103293;TENOR=Os12t0607000-01;KEGG=Os12t0607000-01 (EC:2.1.1.10)
Chr12	irgsp1_rep	five_prime_UTR	25641843	25642005	.	+	.	Parent=Os12t0607000-01
Chr12	irgsp1_rep	CDS	25642006	25642203	.	+	0	Parent=Os12t0607000-01
Chr12	irgsp1_rep	CDS	25643438	25643494	.	+	0	Parent=Os12t0607000-01
Chr12	irgsp1_rep	CDS	25643575	25643774	.	+	0	Parent=Os12t0607000-01
Chr12	irgsp1_rep	CDS	25643855	25643984	.	+	1	Parent=Os12t0607000-01
Chr12	irgsp1_rep	CDS	25644085	25644414	.	+	0	Parent=Os12t0607000-01
Chr12	irgsp1_rep	three_prime_UTR	25644415	25644531	.	+	.	Parent=Os12t0607000-01
Chr12	irgsp1_rep	three_prime_UTR	25644822	25645416	.	+	.	Parent=Os12t0607000-01
Chr12	irgsp1_rep	mRNA	25641901	25645411	.	+	.	ID=Os12t0607000-02;Name=Os12t0607000-02;Locus_id=Os12g0607000;CGSNL Gene Symbol=HMT4;CGSNL Gene Name=HOMOCYSTEINE METHYLTRANSFERASE 4;Oryzabase Gene Symbol Synonym(s)=OsaHMT4%2C OsHMT4;Oryzabase Gene Name Synonym(s)=homocysteine methyltransferase 4;Note=Similar to Homocysteine S-methyltransferase 2 (EC 2.1.1.10) (S- methylmethionine:homocysteine methyltransferase 2) (SMM:Hcy S- methyltransferase 2) (ZmHMT-2).;Transcript_evidence=AK065892 (DDBJ%2C Best hit);ORF_evidence=NP_001105012.1 (RefSeq);GO=Molecular Function: homocysteine S-methyltransferase activity (GO:0008898);InterPro=Homocysteine S-methyltransferase (IPR003726);NIAS_FLcDNA=J013044M21;Oryzabase=22913;Expression=AK065892;TENOR=Os12t0607000-02;KEGG=Os12t0607000-02 (EC:2.1.1.10)
Chr12	irgsp1_rep	five_prime_UTR	25641901	25642005	.	+	.	Parent=Os12t0607000-02
Chr12	irgsp1_rep	CDS	25642006	25642203	.	+	0	Parent=Os12t0607000-02
Chr12	irgsp1_rep	CDS	25643438	25643494	.	+	0	Parent=Os12t0607000-02
Chr12	irgsp1_rep	CDS	25643575	25643774	.	+	0	Parent=Os12t0607000-02
Chr12	irgsp1_rep	CDS	25643855	25643984	.	+	1	Parent=Os12t0607000-02
Chr12	irgsp1_rep	CDS	25644085	25644288	.	+	0	Parent=Os12t0607000-02
Chr12	irgsp1_rep	CDS	25644460	25644531	.	+	0	Parent=Os12t0607000-02
Chr12	irgsp1_rep	CDS	25644822	25644989	.	+	0	Parent=Os12t0607000-02
Chr12	irgsp1_rep	three_prime_UTR	25644990	25645411	.	+	.	Parent=Os12t0607000-02
Chr12	irgsp1_rep	mRNA	25647428	25652224	.	+	.	ID=Os12t0607100-01;Name=Os12t0607100-01;Locus_id=Os12g0607100;Note=Similar to HeteroChromatin protein (Fragment).;Transcript_evidence=AK122105 (DDBJ%2C Best hit);ORF_evidence=B6TNU0 (UniProt);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Protein synthesis factor%2C GTP-binding (IPR000795),Translation elongation factor EFTu/EF1A%2C domain 2 (IPR004161),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Translation elongation factor EF1A/initiation factor IF2gamma%2C C-terminal (IPR009001),Translation initiation factor 2%2C gamma subunit%2C C-terminal (IPR015256);NIAS_FLcDNA=J033126A16;Expression=AK122105;TENOR=Os12t0607100-01;KEGG=Os12t0607100-01
Chr12	irgsp1_rep	five_prime_UTR	25647428	25647682	.	+	.	Parent=Os12t0607100-01
Chr12	irgsp1_rep	five_prime_UTR	25648572	25648579	.	+	.	Parent=Os12t0607100-01
Chr12	irgsp1_rep	CDS	25648580	25648685	.	+	0	Parent=Os12t0607100-01
Chr12	irgsp1_rep	CDS	25649196	25649257	.	+	2	Parent=Os12t0607100-01
Chr12	irgsp1_rep	CDS	25649680	25649792	.	+	0	Parent=Os12t0607100-01
Chr12	irgsp1_rep	CDS	25650057	25650159	.	+	1	Parent=Os12t0607100-01
Chr12	irgsp1_rep	CDS	25650544	25650771	.	+	0	Parent=Os12t0607100-01
Chr12	irgsp1_rep	CDS	25650852	25651070	.	+	0	Parent=Os12t0607100-01
Chr12	irgsp1_rep	CDS	25651163	25651423	.	+	0	Parent=Os12t0607100-01
Chr12	irgsp1_rep	CDS	25651503	25651805	.	+	0	Parent=Os12t0607100-01
Chr12	irgsp1_rep	three_prime_UTR	25651806	25652224	.	+	.	Parent=Os12t0607100-01
Chr12	irgsp1_rep	mRNA	25650682	25652002	.	+	.	ID=Os12t0607100-02;Name=Os12t0607100-02;Locus_id=Os12g0607100;Note=Similar to Eukaryotic translation initiation factor 2 gamma subunit.;Transcript_evidence=AK061482 (DDBJ%2C Best hit);ORF_evidence=B6TNU0 (UniProt);GO=Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Protein synthesis factor%2C GTP-binding (IPR000795),Translation elongation factor EFTu/EF1A%2C domain 2 (IPR004161),Translation elongation/initiation factor/Ribosomal%2C beta-barrel (IPR009000),Translation elongation factor EF1A/initiation factor IF2gamma%2C C-terminal (IPR009001),Translation initiation factor 2%2C gamma subunit%2C C-terminal (IPR015256);NIAS_FLcDNA=006-308-H02;Expression=AK061482;TENOR=Os12t0607100-02;KEGG=Os12t0607100-02
Chr12	irgsp1_rep	CDS	25650682	25650771	.	+	0	Parent=Os12t0607100-02
Chr12	irgsp1_rep	CDS	25650852	25651070	.	+	0	Parent=Os12t0607100-02
Chr12	irgsp1_rep	CDS	25651163	25651423	.	+	0	Parent=Os12t0607100-02
Chr12	irgsp1_rep	CDS	25651503	25651805	.	+	0	Parent=Os12t0607100-02
Chr12	irgsp1_rep	three_prime_UTR	25651806	25652002	.	+	.	Parent=Os12t0607100-02
Chr12	irgsp1_rep	mRNA	25664037	25666550	.	-	.	ID=Os12t0607400-00;Name=Os12t0607400-00;Locus_id=Os12g0607400;Note=Hypothetical conserved gene.;Transcript_evidence=CT837675 (DDBJ%2C Best hit);ORF_evidence=D7NLB6 (UniProt);TENOR=Os12t0607400-00;KEGG=Os12t0607400-00
Chr12	irgsp1_rep	five_prime_UTR	25665979	25666550	.	-	.	Parent=Os12t0607400-00
Chr12	irgsp1_rep	CDS	25665804	25665978	.	-	0	Parent=Os12t0607400-00
Chr12	irgsp1_rep	CDS	25665517	25665701	.	-	2	Parent=Os12t0607400-00
Chr12	irgsp1_rep	CDS	25665388	25665438	.	-	0	Parent=Os12t0607400-00
Chr12	irgsp1_rep	CDS	25665185	25665235	.	-	0	Parent=Os12t0607400-00
Chr12	irgsp1_rep	three_prime_UTR	25665161	25665184	.	-	.	Parent=Os12t0607400-00
Chr12	irgsp1_rep	three_prime_UTR	25664037	25664409	.	-	.	Parent=Os12t0607400-00
Chr12	irgsp1_rep	mRNA	25677871	25679638	.	+	.	ID=Os12t0607800-01;Name=Os12t0607800-01;Locus_id=Os12g0607800;Oryzabase Gene Symbol Synonym(s)=OsFbox675%2C Os_F0744;Oryzabase Gene Name Synonym(s)=F-box protein 675;Note=Cyclin-like F-box domain containing protein.;Transcript_evidence=AK106771 (DDBJ%2C Best hit);ORF_evidence=Q2QMD8 (UniProt);InterPro=Protein of unknown function DUF295 (IPR005174);NIAS_FLcDNA=002-115-F09;Oryzabase=17435;Expression=AK106771;TENOR=Os12t0607800-01;KEGG=Os12t0607800-01
Chr12	irgsp1_rep	five_prime_UTR	25677871	25677975	.	+	.	Parent=Os12t0607800-01
Chr12	irgsp1_rep	CDS	25677976	25679385	.	+	0	Parent=Os12t0607800-01
Chr12	irgsp1_rep	three_prime_UTR	25679386	25679638	.	+	.	Parent=Os12t0607800-01
Chr12	irgsp1_rep	mRNA	25688476	25688867	.	-	.	ID=Os12t0608025-00;Name=Os12t0608025-00;Locus_id=Os12g0608025;Note=Hypothetical protein.;Transcript_evidence=FP093387 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0608025-00
Chr12	irgsp1_rep	five_prime_UTR	25688836	25688867	.	-	.	Parent=Os12t0608025-00
Chr12	irgsp1_rep	CDS	25688476	25688835	.	-	0	Parent=Os12t0608025-00
Chr12	irgsp1_rep	mRNA	25699763	25701967	.	+	.	ID=Os12t0608500-01;Name=Os12t0608500-01;Locus_id=Os12g0608500;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK107367 (DDBJ%2C Best hit),AK110310 (DDBJ%2C Best hit);ORF_evidence=A2ZMK1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Gnk2-homologous domain (IPR002902),Serine/threonine-protein kinase%2C active site (IPR008271),Concanavalin A-like lectin/glucanase (IPR008985),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-127-A12,002-164-B04;Expression=AK107367;TENOR=Os12t0608500-01;KEGG=Os12t0608500-01
Chr12	irgsp1_rep	five_prime_UTR	25699763	25699818	.	+	.	Parent=Os12t0608500-01
Chr12	irgsp1_rep	CDS	25699819	25701882	.	+	0	Parent=Os12t0608500-01
Chr12	irgsp1_rep	three_prime_UTR	25701883	25701967	.	+	.	Parent=Os12t0608500-01
Chr12	irgsp1_rep	mRNA	25702141	25706956	.	-	.	ID=Os12t0608600-01;Name=Os12t0608600-01;Locus_id=Os12g0608600;CGSNL Gene Symbol=STR22;CGSNL Gene Name=SULFURTRANSFERASE 22;Oryzabase Gene Symbol Synonym(s)=OsStr22;Oryzabase Gene Name Synonym(s)=Sulfurtransferase 22;Note=Similar to Thiosulfate sulfurtransferase (EC 2.8.1.1) (Mercaptopyruvate sulfurtransferase Mst2/Rdh2) (EC 2.8.1.2).;Transcript_evidence=AK120712 (DDBJ%2C Best hit);ORF_evidence=Q9ZPK0 (UniProt);GO=Molecular Function: thiosulfate sulfurtransferase activity (GO:0004792);InterPro=Thiosulphate sulfurtransferase%2C conserved site (IPR001307),Rhodanese-like (IPR001763);NIAS_FLcDNA=J023001O05;Oryzabase=12072;Expression=AK120712;TENOR=Os12t0608600-01;KEGG=Os12t0608600-01 (EC:2.8.1.1%2C EC:2.8.1.2)
Chr12	irgsp1_rep	five_prime_UTR	25706877	25706956	.	-	.	Parent=Os12t0608600-01
Chr12	irgsp1_rep	CDS	25706780	25706876	.	-	0	Parent=Os12t0608600-01
Chr12	irgsp1_rep	CDS	25706415	25706638	.	-	2	Parent=Os12t0608600-01
Chr12	irgsp1_rep	CDS	25705807	25705866	.	-	0	Parent=Os12t0608600-01
Chr12	irgsp1_rep	CDS	25705541	25705603	.	-	0	Parent=Os12t0608600-01
Chr12	irgsp1_rep	CDS	25704679	25704803	.	-	0	Parent=Os12t0608600-01
Chr12	irgsp1_rep	CDS	25704327	25704489	.	-	1	Parent=Os12t0608600-01
Chr12	irgsp1_rep	CDS	25704107	25704166	.	-	0	Parent=Os12t0608600-01
Chr12	irgsp1_rep	CDS	25703946	25704004	.	-	0	Parent=Os12t0608600-01
Chr12	irgsp1_rep	CDS	25703281	25703362	.	-	1	Parent=Os12t0608600-01
Chr12	irgsp1_rep	CDS	25703018	25703081	.	-	0	Parent=Os12t0608600-01
Chr12	irgsp1_rep	CDS	25702528	25702595	.	-	2	Parent=Os12t0608600-01
Chr12	irgsp1_rep	CDS	25702345	25702443	.	-	0	Parent=Os12t0608600-01
Chr12	irgsp1_rep	three_prime_UTR	25702141	25702344	.	-	.	Parent=Os12t0608600-01
Chr12	irgsp1_rep	mRNA	25702077	25706990	.	-	.	ID=Os12t0608600-02;Name=Os12t0608600-02;Locus_id=Os12g0608600;RAP-DB Gene Symbol Synonym(s)=STR22%2C OsStr22;RAP-DB Gene Name Synonym(s)=SULFURTRANSFERASE 22%2C Sulfurtransferase 22;CGSNL Gene Symbol=STR22;CGSNL Gene Name=SULFURTRANSFERASE 22;Oryzabase Gene Symbol Synonym(s)=OsStr22;Oryzabase Gene Name Synonym(s)=Sulfurtransferase 22;Note=Sulfurtransferase;Transcript_evidence=Inferred from literature;ORF_evidence=Inferred from literature;GO=Molecular Function: thiosulfate sulfurtransferase activity (GO:0004792);InterPro=Rhodanese-like domain (IPR001763),Thiosulphate sulfurtransferase%2C conserved site (IPR001307);NIAS_FLcDNA=001-022-D02 (truncated);Manual Curation=November 8%2C 2016;Literature_PMID=21821426;Oryzabase=12072;Expression=AK059102;TENOR=Os12t0608600-02;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	25706877	25706990	.	-	.	Parent=Os12t0608600-02
Chr12	irgsp1_rep	CDS	25706718	25706876	.	-	0	Parent=Os12t0608600-02
Chr12	irgsp1_rep	CDS	25706415	25706639	.	-	0	Parent=Os12t0608600-02
Chr12	irgsp1_rep	CDS	25705807	25705866	.	-	0	Parent=Os12t0608600-02
Chr12	irgsp1_rep	CDS	25705541	25705603	.	-	0	Parent=Os12t0608600-02
Chr12	irgsp1_rep	CDS	25704679	25704803	.	-	0	Parent=Os12t0608600-02
Chr12	irgsp1_rep	CDS	25704327	25704489	.	-	1	Parent=Os12t0608600-02
Chr12	irgsp1_rep	CDS	25704107	25704166	.	-	0	Parent=Os12t0608600-02
Chr12	irgsp1_rep	CDS	25703946	25704004	.	-	0	Parent=Os12t0608600-02
Chr12	irgsp1_rep	CDS	25703281	25703362	.	-	1	Parent=Os12t0608600-02
Chr12	irgsp1_rep	CDS	25703018	25703081	.	-	0	Parent=Os12t0608600-02
Chr12	irgsp1_rep	CDS	25702528	25702595	.	-	2	Parent=Os12t0608600-02
Chr12	irgsp1_rep	CDS	25702345	25702443	.	-	0	Parent=Os12t0608600-02
Chr12	irgsp1_rep	three_prime_UTR	25702077	25702344	.	-	.	Parent=Os12t0608600-02
Chr12	irgsp1_rep	mRNA	25710726	25711730	.	+	.	ID=Os12t0608633-00;Name=Os12t0608633-00;Locus_id=Os12g0608633;Note=Hypothetical protein.;Transcript_evidence=tplb0026e13 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0608633-00
Chr12	irgsp1_rep	CDS	25710726	25711571	.	+	0	Parent=Os12t0608633-00
Chr12	irgsp1_rep	three_prime_UTR	25711572	25711730	.	+	.	Parent=Os12t0608633-00
Chr12	irgsp1_rep	mRNA	25711932	25712094	.	+	.	ID=Os12t0608666-00;Name=Os12t0608666-00;Locus_id=Os12g0608666;Note=Non-protein coding transcript.;Transcript_evidence=BT085185 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0608666-00
Chr12	irgsp1_rep	exon	25711932	25712094	.	+	.	Parent=Os12t0608666-00
Chr12	irgsp1_rep	mRNA	25712030	25712683	.	-	.	ID=Os12t0608700-00;Name=Os12t0608700-00;Locus_id=Os12g0608700;Note=Gnk2-homologous domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9GE72 (UniProt);InterPro=Gnk2-homologous domain (IPR002902);TENOR=Os12t0608700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	25712030	25712683	.	-	0	Parent=Os12t0608700-00
Chr12	irgsp1_rep	mRNA	25718546	25720672	.	-	.	ID=Os12t0608900-00;Name=Os12t0608900-00;Locus_id=Os12g0608900;Note=Protein of unknown function DUF26 domain containing protein.;Transcript_evidence=BT063534 (DDBJ);ORF_evidence=NP_001067239.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Gnk2-homologous domain (IPR002902),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os12t0608900-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	25718624	25720672	.	-	0	Parent=Os12t0608900-00
Chr12	irgsp1_rep	three_prime_UTR	25718546	25718623	.	-	.	Parent=Os12t0608900-00
Chr12	irgsp1_rep	mRNA	25722111	25722886	.	-	.	ID=Os12t0609000-00;Name=Os12t0609000-00;Locus_id=Os12g0609000;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001067240.1 (RefSeq);TENOR=Os12t0609000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	25722813	25722886	.	-	0	Parent=Os12t0609000-00
Chr12	irgsp1_rep	CDS	25722111	25722372	.	-	1	Parent=Os12t0609000-00
Chr12	irgsp1_rep	mRNA	25722806	25723804	.	+	.	ID=Os12t0609025-00;Name=Os12t0609025-00;Locus_id=Os12g0609025;Note=Conserved hypothetical protein.;Transcript_evidence=EU951884 (DDBJ);ORF_evidence=NP_001174068.1 (RefSeq);TENOR=Os12t0609025-00
Chr12	irgsp1_rep	CDS	25722806	25723804	.	+	0	Parent=Os12t0609025-00
Chr12	irgsp1_rep	mRNA	25725299	25726044	.	+	.	ID=Os12t0609050-01;Name=Os12t0609050-01;Locus_id=Os12g0609050;Note=Hypothetical conserved gene.;Transcript_evidence=AK242023 (DDBJ%2C Best hit);ORF_evidence=B9GE74 (UniProt);NIAS_FLcDNA=J075112K23;TENOR=Os12t0609050-01;KEGG=Os12t0609050-01
Chr12	irgsp1_rep	five_prime_UTR	25725299	25725300	.	+	.	Parent=Os12t0609050-01
Chr12	irgsp1_rep	CDS	25725301	25725567	.	+	0	Parent=Os12t0609050-01
Chr12	irgsp1_rep	three_prime_UTR	25725568	25725586	.	+	.	Parent=Os12t0609050-01
Chr12	irgsp1_rep	three_prime_UTR	25725670	25726044	.	+	.	Parent=Os12t0609050-01
Chr12	irgsp1_rep	mRNA	25726237	25726754	.	-	.	ID=Os12t0609100-01;Name=Os12t0609100-01;Locus_id=Os12g0609100;Note=Conserved hypothetical protein.;Transcript_evidence=AK107985 (DDBJ%2C Best hit);ORF_evidence=NP_001046816.1 (RefSeq);NIAS_FLcDNA=002-135-E10;Expression=AK107985;TENOR=Os12t0609100-01;KEGG=Os12t0609100-01
Chr12	irgsp1_rep	five_prime_UTR	25726532	25726754	.	-	.	Parent=Os12t0609100-01
Chr12	irgsp1_rep	CDS	25726241	25726531	.	-	0	Parent=Os12t0609100-01
Chr12	irgsp1_rep	three_prime_UTR	25726237	25726240	.	-	.	Parent=Os12t0609100-01
Chr12	irgsp1_rep	mRNA	25727713	25729355	.	+	.	ID=Os12t0609200-01;Name=Os12t0609200-01;Locus_id=Os12g0609200;Note=Conserved hypothetical protein.;Transcript_evidence=AK067245 (DDBJ%2C Best hit);ORF_evidence=NP_001061849.1 (RefSeq);NIAS_FLcDNA=J013099D05;Expression=AK067245;TENOR=Os12t0609200-01;KEGG=Os12t0609200-01
Chr12	irgsp1_rep	five_prime_UTR	25727713	25728209	.	+	.	Parent=Os12t0609200-01
Chr12	irgsp1_rep	CDS	25728210	25728479	.	+	0	Parent=Os12t0609200-01
Chr12	irgsp1_rep	CDS	25728566	25728952	.	+	0	Parent=Os12t0609200-01
Chr12	irgsp1_rep	three_prime_UTR	25728953	25729355	.	+	.	Parent=Os12t0609200-01
Chr12	irgsp1_rep	mRNA	25738156	25741105	.	-	.	ID=Os12t0609500-01;Name=Os12t0609500-01;Locus_id=Os12g0609500;Note=Glucose/ribitol dehydrogenase family protein.;Transcript_evidence=AK071747 (DDBJ%2C Best hit);ORF_evidence=B6TKV5 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J023113G07;Expression=AK071747;TENOR=Os12t0609500-01;KEGG=Os12t0609500-01
Chr12	irgsp1_rep	five_prime_UTR	25740954	25741105	.	-	.	Parent=Os12t0609500-01
Chr12	irgsp1_rep	CDS	25740831	25740953	.	-	0	Parent=Os12t0609500-01
Chr12	irgsp1_rep	CDS	25740090	25740242	.	-	0	Parent=Os12t0609500-01
Chr12	irgsp1_rep	CDS	25739112	25739205	.	-	0	Parent=Os12t0609500-01
Chr12	irgsp1_rep	CDS	25738930	25739012	.	-	2	Parent=Os12t0609500-01
Chr12	irgsp1_rep	CDS	25738665	25738818	.	-	0	Parent=Os12t0609500-01
Chr12	irgsp1_rep	CDS	25738313	25738545	.	-	2	Parent=Os12t0609500-01
Chr12	irgsp1_rep	three_prime_UTR	25738156	25738312	.	-	.	Parent=Os12t0609500-01
Chr12	irgsp1_rep	mRNA	25744009	25745100	.	-	.	ID=Os12t0609600-01;Name=Os12t0609600-01;Locus_id=Os12g0609600;CGSNL Gene Symbol=SAUR57;CGSNL Gene Name=SMALL AUXIN-UP RNA 57;Oryzabase Gene Symbol Synonym(s)=OsSAUR57;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 57;Note=Auxin responsive SAUR protein domain containing protein.;Transcript_evidence=AK111050 (DDBJ%2C Best hit);ORF_evidence=B9GE77 (UniProt);InterPro=Auxin responsive SAUR protein (IPR003676);NIAS_FLcDNA=002-175-C07;Oryzabase=9182;Expression=AK111050;TENOR=Os12t0609600-01;KEGG=Os12t0609600-01
Chr12	irgsp1_rep	five_prime_UTR	25744864	25745100	.	-	.	Parent=Os12t0609600-01
Chr12	irgsp1_rep	CDS	25744342	25744863	.	-	0	Parent=Os12t0609600-01
Chr12	irgsp1_rep	three_prime_UTR	25744009	25744341	.	-	.	Parent=Os12t0609600-01
Chr12	irgsp1_rep	mRNA	25752130	25758238	.	+	.	ID=Os12t0609800-01;Name=Os12t0609800-01;Locus_id=Os12g0609800;Oryzabase Gene Symbol Synonym(s)=OsWD40-199;Note=WD40/YVTN repeat-like domain containing protein.;Transcript_evidence=AK101303 (DDBJ%2C Best hit);ORF_evidence=B9GE78 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=J033033K21;Oryzabase=10880;Expression=AK101303;TENOR=Os12t0609800-01;KEGG=Os12t0609800-01
Chr12	irgsp1_rep	five_prime_UTR	25752130	25752191	.	+	.	Parent=Os12t0609800-01
Chr12	irgsp1_rep	CDS	25752192	25752311	.	+	0	Parent=Os12t0609800-01
Chr12	irgsp1_rep	CDS	25752396	25752584	.	+	0	Parent=Os12t0609800-01
Chr12	irgsp1_rep	CDS	25752693	25752857	.	+	0	Parent=Os12t0609800-01
Chr12	irgsp1_rep	CDS	25753092	25753488	.	+	0	Parent=Os12t0609800-01
Chr12	irgsp1_rep	CDS	25753569	25753687	.	+	2	Parent=Os12t0609800-01
Chr12	irgsp1_rep	CDS	25754367	25754444	.	+	0	Parent=Os12t0609800-01
Chr12	irgsp1_rep	CDS	25754580	25754720	.	+	0	Parent=Os12t0609800-01
Chr12	irgsp1_rep	CDS	25754858	25754902	.	+	0	Parent=Os12t0609800-01
Chr12	irgsp1_rep	CDS	25755040	25755206	.	+	0	Parent=Os12t0609800-01
Chr12	irgsp1_rep	CDS	25755276	25755354	.	+	1	Parent=Os12t0609800-01
Chr12	irgsp1_rep	CDS	25755428	25755510	.	+	0	Parent=Os12t0609800-01
Chr12	irgsp1_rep	CDS	25755662	25755791	.	+	1	Parent=Os12t0609800-01
Chr12	irgsp1_rep	CDS	25755875	25756007	.	+	0	Parent=Os12t0609800-01
Chr12	irgsp1_rep	CDS	25756398	25756546	.	+	2	Parent=Os12t0609800-01
Chr12	irgsp1_rep	CDS	25756782	25756977	.	+	0	Parent=Os12t0609800-01
Chr12	irgsp1_rep	CDS	25757529	25757731	.	+	2	Parent=Os12t0609800-01
Chr12	irgsp1_rep	three_prime_UTR	25757732	25758238	.	+	.	Parent=Os12t0609800-01
Chr12	irgsp1_rep	mRNA	25755664	25758117	.	+	.	ID=Os12t0609800-02;Name=Os12t0609800-02;Locus_id=Os12g0609800;Oryzabase Gene Symbol Synonym(s)=OsWD40-199;Note=Similar to predicted protein.;Transcript_evidence=AK058469 (DDBJ%2C Best hit);ORF_evidence=B9GE78 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943);NIAS_FLcDNA=001-016-B08;Oryzabase=10880;Expression=AK058469;TENOR=Os12t0609800-02;KEGG=Os12t0609800-02
Chr12	irgsp1_rep	five_prime_UTR	25755664	25755665	.	+	.	Parent=Os12t0609800-02
Chr12	irgsp1_rep	CDS	25755666	25755791	.	+	0	Parent=Os12t0609800-02
Chr12	irgsp1_rep	CDS	25755875	25756007	.	+	0	Parent=Os12t0609800-02
Chr12	irgsp1_rep	CDS	25756398	25756546	.	+	2	Parent=Os12t0609800-02
Chr12	irgsp1_rep	CDS	25756782	25756977	.	+	0	Parent=Os12t0609800-02
Chr12	irgsp1_rep	CDS	25757529	25757731	.	+	2	Parent=Os12t0609800-02
Chr12	irgsp1_rep	three_prime_UTR	25757732	25758117	.	+	.	Parent=Os12t0609800-02
Chr12	irgsp1_rep	mRNA	25758738	25764063	.	-	.	ID=Os12t0609900-00;Name=Os12t0609900-00;Locus_id=Os12g0609900;Oryzabase Gene Symbol Synonym(s)=OsFbox676%2C Os_F0269;Oryzabase Gene Name Synonym(s)=F-box protein 676;Note=Similar to F-box domain containing protein%2C expressed.;Transcript_evidence=EU974494 (DDBJ);ORF_evidence=Q2QMC1 (UniProt);InterPro=F-box domain%2C Skp2-like (IPR022364);Oryzabase=17436;TENOR=Os12t0609900-00;KEGG=Os12t0609900-00;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	25763625	25764063	.	-	0	Parent=Os12t0609900-00
Chr12	irgsp1_rep	CDS	25758738	25759561	.	-	2	Parent=Os12t0609900-00
Chr12	irgsp1_rep	mRNA	25764900	25765722	.	+	.	ID=Os12t0610100-01;Name=Os12t0610100-01;Locus_id=Os12g0610100;Note=Conserved hypothetical protein.;Transcript_evidence=AK288137 (DDBJ%2C Best hit);ORF_evidence=NP_001177055.1 (RefSeq);NIAS_FLcDNA=J080306G13;TENOR=Os12t0610100-01;KEGG=Os12t0610100-01
Chr12	irgsp1_rep	five_prime_UTR	25764900	25764951	.	+	.	Parent=Os12t0610100-01
Chr12	irgsp1_rep	CDS	25764952	25765479	.	+	0	Parent=Os12t0610100-01
Chr12	irgsp1_rep	three_prime_UTR	25765480	25765722	.	+	.	Parent=Os12t0610100-01
Chr12	irgsp1_rep	mRNA	25768808	25773052	.	+	.	ID=Os12t0610200-01;Name=Os12t0610200-01;Locus_id=Os12g0610200;RAP-DB Gene Symbol Synonym(s)=OsPIL11%2C OsbHLH102;RAP-DB Gene Name Synonym(s)=PhytoChrome-Interacting factor-Like 11%2C basic helix-loop-helix protein 102;CGSNL Gene Symbol=PIL11;Oryzabase Gene Symbol Synonym(s)=OsPIL11%2C OsbHLH102%2C bHLH102%2C PIF4%2C OsPIF4;Oryzabase Gene Name Synonym(s)=PHYTOCHROME INTERACTING FACTOR-LIKE 11%2C basic helix-loop-helix protein 102%2C PhytoChrome interacting factor 4;Note=Basic helix-loop-helix transcription factor%2C Regulation of grain size;Transcript_evidence=AK066763;ORF_evidence=Q0IM00;GO=Molecular Function: protein dimerization activity (GO:0046983);InterPro=Helix-loop-helix DNA-binding domain superfamily (IPR036638),Myc-type%2C basic helix-loop-helix (bHLH) domain (IPR011598);NIAS_FLcDNA=J013074J19;Manual Curation=July 24%2C 2018;Literature_PMID=30030651;Oryzabase=14334;Expression=AK066763;TENOR=Os12t0610200-01;KEGG=Os12t0610200-01
Chr12	irgsp1_rep	five_prime_UTR	25768808	25769146	.	+	.	Parent=Os12t0610200-01
Chr12	irgsp1_rep	five_prime_UTR	25769828	25769882	.	+	.	Parent=Os12t0610200-01
Chr12	irgsp1_rep	CDS	25769883	25769944	.	+	0	Parent=Os12t0610200-01
Chr12	irgsp1_rep	CDS	25770043	25770817	.	+	1	Parent=Os12t0610200-01
Chr12	irgsp1_rep	CDS	25770993	25771058	.	+	0	Parent=Os12t0610200-01
Chr12	irgsp1_rep	CDS	25771190	25771255	.	+	0	Parent=Os12t0610200-01
Chr12	irgsp1_rep	CDS	25771342	25771584	.	+	0	Parent=Os12t0610200-01
Chr12	irgsp1_rep	CDS	25771821	25771946	.	+	0	Parent=Os12t0610200-01
Chr12	irgsp1_rep	three_prime_UTR	25771947	25771969	.	+	.	Parent=Os12t0610200-01
Chr12	irgsp1_rep	three_prime_UTR	25772728	25773052	.	+	.	Parent=Os12t0610200-01
Chr12	irgsp1_rep	mRNA	25771051	25772690	.	-	.	ID=Os12t0610250-01;Name=Os12t0610250-01;Locus_id=Os12g0610250;Note=Conserved hypothetical protein.;Transcript_evidence=AK241902 (DDBJ%2C Best hit);ORF_evidence=NP_001177056.1 (RefSeq);NIAS_FLcDNA=J075023P08;TENOR=Os12t0610250-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	25772148	25772690	.	-	.	Parent=Os12t0610250-01
Chr12	irgsp1_rep	CDS	25772073	25772147	.	-	0	Parent=Os12t0610250-01
Chr12	irgsp1_rep	CDS	25771827	25771953	.	-	0	Parent=Os12t0610250-01
Chr12	irgsp1_rep	CDS	25771186	25771601	.	-	2	Parent=Os12t0610250-01
Chr12	irgsp1_rep	three_prime_UTR	25771051	25771185	.	-	.	Parent=Os12t0610250-01
Chr12	irgsp1_rep	mRNA	25780954	25781952	.	-	.	ID=Os12t0610300-00;Name=Os12t0610300-00;Locus_id=Os12g0610300;Note=Hypothetical conserved gene.;Transcript_evidence=CT835522 (DDBJ%2C Best hit);ORF_evidence=NP_001177057.1 (RefSeq);TENOR=Os12t0610300-00;KEGG=Os12t0610300-00
Chr12	irgsp1_rep	CDS	25781604	25781952	.	-	0	Parent=Os12t0610300-00
Chr12	irgsp1_rep	CDS	25781177	25781259	.	-	2	Parent=Os12t0610300-00
Chr12	irgsp1_rep	three_prime_UTR	25780954	25781176	.	-	.	Parent=Os12t0610300-00
Chr12	irgsp1_rep	mRNA	25790709	25796263	.	+	.	ID=Os12t0610500-01;Name=Os12t0610500-01;Locus_id=Os12g0610500;Note=SAM (and some other nucleotide) binding motif domain containing protein.;Transcript_evidence=AK106471 (DDBJ%2C Best hit);ORF_evidence=B9GE82 (UniProt);NIAS_FLcDNA=002-104-A06;Expression=AK106471;TENOR=Os12t0610500-01;KEGG=Os12t0610500-01
Chr12	irgsp1_rep	five_prime_UTR	25790709	25790754	.	+	.	Parent=Os12t0610500-01
Chr12	irgsp1_rep	CDS	25790755	25790904	.	+	0	Parent=Os12t0610500-01
Chr12	irgsp1_rep	CDS	25790999	25791091	.	+	0	Parent=Os12t0610500-01
Chr12	irgsp1_rep	CDS	25791215	25791301	.	+	0	Parent=Os12t0610500-01
Chr12	irgsp1_rep	CDS	25791612	25791686	.	+	0	Parent=Os12t0610500-01
Chr12	irgsp1_rep	CDS	25791792	25791872	.	+	0	Parent=Os12t0610500-01
Chr12	irgsp1_rep	CDS	25792384	25792511	.	+	0	Parent=Os12t0610500-01
Chr12	irgsp1_rep	CDS	25792604	25792837	.	+	1	Parent=Os12t0610500-01
Chr12	irgsp1_rep	CDS	25792953	25793127	.	+	1	Parent=Os12t0610500-01
Chr12	irgsp1_rep	CDS	25793736	25793819	.	+	0	Parent=Os12t0610500-01
Chr12	irgsp1_rep	CDS	25794373	25794613	.	+	0	Parent=Os12t0610500-01
Chr12	irgsp1_rep	CDS	25794719	25794897	.	+	2	Parent=Os12t0610500-01
Chr12	irgsp1_rep	CDS	25795244	25795447	.	+	0	Parent=Os12t0610500-01
Chr12	irgsp1_rep	three_prime_UTR	25795448	25795451	.	+	.	Parent=Os12t0610500-01
Chr12	irgsp1_rep	three_prime_UTR	25795837	25796263	.	+	.	Parent=Os12t0610500-01
Chr12	irgsp1_rep	mRNA	25800944	25806504	.	+	.	ID=Os12t0610600-01;Name=Os12t0610600-01;Locus_id=Os12g0610600;RAP-DB Gene Symbol Synonym(s)=OMTN3%2C ONAC60;RAP-DB Gene Name Synonym(s)=Oryza miR164-targeted NAC3%2C NAC domain-containing protein 60;CGSNL Gene Symbol=NAC60;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 60;Oryzabase Gene Symbol Synonym(s)=ONAC060%2C ONAC60%2C OMTN3%2C OsNAC60%2C DLN265%2C OsDLN265;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 060%2C NAC domain-containing protein 60%2C miR164-targeted NAC3%2C Oryza miR164-targeted NAC3%2C DLN repressor 265%2C DLN motif protein 265;Note=NAC transcription factor%2C Negative regulation of drought tolerance;Transcript_evidence=AK071464;ORF_evidence=Q2QMB5;GO=Biological Process: regulation of transcription%2C DNA-templated (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=NAC domain superfamily (IPR036093),NAC domain (IPR003441);NIAS_FLcDNA=J023097O13;Manual Curation=January 5%2C 2018;Literature_PMID=24604734;Oryzabase=11499;Expression=AK071464;TENOR=Os12t0610600-01;KEGG=Os12t0610600-01;Subcellular location=nucleus (GO:0005634)
Chr12	irgsp1_rep	five_prime_UTR	25800944	25801162	.	+	.	Parent=Os12t0610600-01
Chr12	irgsp1_rep	CDS	25801163	25801352	.	+	0	Parent=Os12t0610600-01
Chr12	irgsp1_rep	CDS	25804266	25804543	.	+	2	Parent=Os12t0610600-01
Chr12	irgsp1_rep	CDS	25805709	25806242	.	+	0	Parent=Os12t0610600-01
Chr12	irgsp1_rep	three_prime_UTR	25806243	25806504	.	+	.	Parent=Os12t0610600-01
Chr12	irgsp1_rep	mRNA	25807692	25809339	.	-	.	ID=Os12t0610800-01;Name=Os12t0610800-01;Locus_id=Os12g0610800;Note=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup domain containing protein.;Transcript_evidence=AK073789 (DDBJ%2C Best hit);ORF_evidence=C5YRU8 (UniProt);InterPro=Uncharacterised protein family UPF0497%2C trans-membrane plant subgroup (IPR006459),Uncharacterised protein family UPF0497%2C trans-membrane plant (IPR006702);NIAS_FLcDNA=J033066M20;Expression=AK073789;TENOR=Os12t0610800-01;KEGG=Os12t0610800-01
Chr12	irgsp1_rep	five_prime_UTR	25809301	25809339	.	-	.	Parent=Os12t0610800-01
Chr12	irgsp1_rep	CDS	25809059	25809300	.	-	0	Parent=Os12t0610800-01
Chr12	irgsp1_rep	CDS	25808858	25808969	.	-	1	Parent=Os12t0610800-01
Chr12	irgsp1_rep	CDS	25808113	25808346	.	-	0	Parent=Os12t0610800-01
Chr12	irgsp1_rep	three_prime_UTR	25807692	25808112	.	-	.	Parent=Os12t0610800-01
Chr12	irgsp1_rep	mRNA	25807637	25808230	.	-	.	ID=Os12t0610800-02;Name=Os12t0610800-02;Locus_id=Os12g0610800;Note=Similar to UPF0497 membrane protein 3.;Transcript_evidence=AK063882 (DDBJ%2C Best hit);ORF_evidence=B8BMY7 (UniProt);NIAS_FLcDNA=001-122-F09;Expression=AK063882;TENOR=Os12t0610800-02;KEGG=Os12t0610800-02
Chr12	irgsp1_rep	five_prime_UTR	25808230	25808230	.	-	.	Parent=Os12t0610800-02
Chr12	irgsp1_rep	CDS	25808113	25808229	.	-	0	Parent=Os12t0610800-02
Chr12	irgsp1_rep	three_prime_UTR	25807637	25808112	.	-	.	Parent=Os12t0610800-02
Chr12	irgsp1_rep	mRNA	25812408	25815061	.	+	.	ID=Os12t0610950-01;Name=Os12t0610950-01;Locus_id=Os12g0610950;Note=Conserved hypothetical protein.;Transcript_evidence=AK242166 (DDBJ%2C Best hit);ORF_evidence=NP_001177058.1 (RefSeq);NIAS_FLcDNA=J075157D04;TENOR=Os12t0610950-01;KEGG=Os12t0610950-01
Chr12	irgsp1_rep	five_prime_UTR	25812408	25812428	.	+	.	Parent=Os12t0610950-01
Chr12	irgsp1_rep	CDS	25812429	25812749	.	+	0	Parent=Os12t0610950-01
Chr12	irgsp1_rep	three_prime_UTR	25812750	25815061	.	+	.	Parent=Os12t0610950-01
Chr12	irgsp1_rep	mRNA	25815277	25818855	.	-	.	ID=Os12t0611000-01;Name=Os12t0611000-01;Locus_id=Os12g0611000;Oryzabase Gene Symbol Synonym(s)=OsLOL1%2C OsSTA289%2C OsLSD1;Oryzabase Gene Name Synonym(s)=LSD1-like 1;Note=Similar to Zinc-finger protein Lsd1.;Transcript_evidence=AK111837 (DDBJ%2C Best hit);ORF_evidence=Q2QMB3 (UniProt);InterPro=Zinc finger%2C LSD1-type (IPR005735);NIAS_FLcDNA=J023139G05;Oryzabase=9446;Expression=AK111837;TENOR=Os12t0611000-01;KEGG=Os12t0611000-01
Chr12	irgsp1_rep	five_prime_UTR	25818644	25818855	.	-	.	Parent=Os12t0611000-01
Chr12	irgsp1_rep	five_prime_UTR	25818295	25818296	.	-	.	Parent=Os12t0611000-01
Chr12	irgsp1_rep	CDS	25818180	25818294	.	-	0	Parent=Os12t0611000-01
Chr12	irgsp1_rep	CDS	25817092	25817205	.	-	2	Parent=Os12t0611000-01
Chr12	irgsp1_rep	CDS	25816200	25816309	.	-	2	Parent=Os12t0611000-01
Chr12	irgsp1_rep	CDS	25816045	25816107	.	-	0	Parent=Os12t0611000-01
Chr12	irgsp1_rep	CDS	25815879	25815950	.	-	0	Parent=Os12t0611000-01
Chr12	irgsp1_rep	CDS	25815724	25815768	.	-	0	Parent=Os12t0611000-01
Chr12	irgsp1_rep	three_prime_UTR	25815277	25815723	.	-	.	Parent=Os12t0611000-01
Chr12	irgsp1_rep	mRNA	25820882	25824699	.	-	.	ID=Os12t0611100-01;Name=Os12t0611100-01;Locus_id=Os12g0611100;CGSNL Gene Symbol=RLCK373;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 373;Oryzabase Gene Symbol Synonym(s)=OsRLCK373;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 373;Note=Similar to serine/threonine-protein kinase receptor.;Transcript_evidence=AK066826 (DDBJ%2C Best hit);ORF_evidence=NP_001151196.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine-threonine/tyrosine-protein kinase (IPR001245),Protein kinase-like domain (IPR011009);NIAS_FLcDNA=J013075B11;Oryzabase=19043;TENOR=Os12t0611100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	25823613	25824699	.	-	.	Parent=Os12t0611100-01
Chr12	irgsp1_rep	five_prime_UTR	25823158	25823532	.	-	.	Parent=Os12t0611100-01
Chr12	irgsp1_rep	CDS	25822846	25823157	.	-	0	Parent=Os12t0611100-01
Chr12	irgsp1_rep	three_prime_UTR	25822585	25822845	.	-	.	Parent=Os12t0611100-01
Chr12	irgsp1_rep	three_prime_UTR	25822339	25822489	.	-	.	Parent=Os12t0611100-01
Chr12	irgsp1_rep	three_prime_UTR	25820882	25821459	.	-	.	Parent=Os12t0611100-01
Chr12	irgsp1_rep	mRNA	25822378	25822810	.	+	.	ID=Os12t0611150-00;Name=Os12t0611150-00;Locus_id=Os12g0611150;Note=Non-protein coding transcript.;Transcript_evidence=EU949024 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0611150-00
Chr12	irgsp1_rep	exon	25822378	25822810	.	+	.	Parent=Os12t0611150-00
Chr12	irgsp1_rep	mRNA	25828666	25832900	.	-	.	ID=Os12t0611200-01;Name=Os12t0611200-01;Locus_id=Os12g0611200;Oryzabase Gene Symbol Synonym(s)=OsRH9;Oryzabase Gene Name Synonym(s)=RNA helicase 9;Note=RNA helicase.;Transcript_evidence=AK287833 (DDBJ%2C Best hit);ORF_evidence=NP_001147777.1 (RefSeq);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: helicase activity (GO:0004386),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATP-dependent helicase activity (GO:0008026);InterPro=Helicase%2C C-terminal (IPR001650),DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (IPR011545),DEAD-like helicase (IPR014001),RNA helicase%2C DEAD-box type%2C Q motif (IPR014014);NIAS_FLcDNA=J065188H09;Oryzabase=19129;TENOR=Os12t0611200-01;KEGG=Os12t0611200-01
Chr12	irgsp1_rep	five_prime_UTR	25832774	25832900	.	-	.	Parent=Os12t0611200-01
Chr12	irgsp1_rep	CDS	25832399	25832773	.	-	0	Parent=Os12t0611200-01
Chr12	irgsp1_rep	CDS	25831538	25831665	.	-	0	Parent=Os12t0611200-01
Chr12	irgsp1_rep	CDS	25831028	25831436	.	-	1	Parent=Os12t0611200-01
Chr12	irgsp1_rep	CDS	25830383	25830481	.	-	0	Parent=Os12t0611200-01
Chr12	irgsp1_rep	CDS	25830058	25830282	.	-	0	Parent=Os12t0611200-01
Chr12	irgsp1_rep	CDS	25829734	25829895	.	-	0	Parent=Os12t0611200-01
Chr12	irgsp1_rep	CDS	25829115	25829603	.	-	0	Parent=Os12t0611200-01
Chr12	irgsp1_rep	three_prime_UTR	25828666	25829114	.	-	.	Parent=Os12t0611200-01
Chr12	irgsp1_rep	mRNA	25831233	25832574	.	+	.	ID=Os12t0611250-00;Name=Os12t0611250-00;Locus_id=Os12g0611250;Note=Hypothetical gene.;Transcript_evidence=BT086955 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0611250-00
Chr12	irgsp1_rep	five_prime_UTR	25831233	25831234	.	+	.	Parent=Os12t0611250-00
Chr12	irgsp1_rep	CDS	25831235	25831435	.	+	0	Parent=Os12t0611250-00
Chr12	irgsp1_rep	CDS	25831537	25831665	.	+	0	Parent=Os12t0611250-00
Chr12	irgsp1_rep	CDS	25832399	25832574	.	+	0	Parent=Os12t0611250-00
Chr12	irgsp1_rep	mRNA	25838652	25840421	.	-	.	ID=Os12t0611300-00;Name=Os12t0611300-00;Locus_id=Os12g0611300;Oryzabase Gene Symbol Synonym(s)=OspPLAIIIzeta%2C pPLAIIIzeta;Oryzabase Gene Name Synonym(s)=Patatin-related phospholipase A III zeta;Note=Similar to Patatin-like phospholipase family protein%2C expressed.;Transcript_evidence=AK364749 (DDBJ);ORF_evidence=Q2QMB1 (UniProt);GO=Biological Process: metabolic process (GO:0008152);InterPro=Acyl transferase/acyl hydrolase/lysophospholipase (IPR016035);Oryzabase=19876;TENOR=Os12t0611300-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	25839350	25840421	.	-	0	Parent=Os12t0611300-00
Chr12	irgsp1_rep	CDS	25838652	25839148	.	-	2	Parent=Os12t0611300-00
Chr12	irgsp1_rep	mRNA	25851429	25852257	.	+	.	ID=Os12t0611500-00;Name=Os12t0611500-00;Locus_id=Os12g0611500;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);InterPro=Ribonuclease H1%2C N-terminal (IPR011320);TENOR=Os12t0611500-00
Chr12	irgsp1_rep	five_prime_UTR	25851429	25851432	.	+	.	Parent=Os12t0611500-00
Chr12	irgsp1_rep	CDS	25851433	25852257	.	+	0	Parent=Os12t0611500-00
Chr12	irgsp1_rep	mRNA	25873348	25880813	.	-	.	ID=Os12t0611700-01;Name=Os12t0611700-01;Locus_id=Os12g0611700;Note=Conserved hypothetical protein.;Transcript_evidence=AK062659 (DDBJ%2C Best hit);ORF_evidence=B9GE87 (UniProt);NIAS_FLcDNA=001-105-F03;TENOR=Os12t0611700-01;B5toI1=Exon-intron structures and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	25880812	25880813	.	-	.	Parent=Os12t0611700-01
Chr12	irgsp1_rep	CDS	25880594	25880811	.	-	0	Parent=Os12t0611700-01
Chr12	irgsp1_rep	CDS	25873568	25873790	.	-	1	Parent=Os12t0611700-01
Chr12	irgsp1_rep	three_prime_UTR	25873348	25873567	.	-	.	Parent=Os12t0611700-01
Chr12	irgsp1_rep	mRNA	25883105	25885917	.	+	.	ID=Os12t0611900-01;Name=Os12t0611900-01;Locus_id=Os12g0611900;Note=Glycosyl transferase%2C family 17 protein.;Transcript_evidence=AK101128 (DDBJ%2C Best hit);ORF_evidence=NP_973449.1 (RefSeq);GO=Biological Process: protein N-linked glycosylation (GO:0006487),Cellular Component: membrane (GO:0016020),Molecular Function: beta-1%2C4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity (GO:0003830);InterPro=Glycosyl transferase%2C family 17 (IPR006813);NIAS_FLcDNA=J033025O17;Expression=AK101128;TENOR=Os12t0611900-01;KEGG=Os12t0611900-01
Chr12	irgsp1_rep	five_prime_UTR	25883105	25883523	.	+	.	Parent=Os12t0611900-01
Chr12	irgsp1_rep	five_prime_UTR	25884332	25884453	.	+	.	Parent=Os12t0611900-01
Chr12	irgsp1_rep	CDS	25884454	25885548	.	+	0	Parent=Os12t0611900-01
Chr12	irgsp1_rep	three_prime_UTR	25885549	25885917	.	+	.	Parent=Os12t0611900-01
Chr12	irgsp1_rep	mRNA	25888964	25892988	.	-	.	ID=Os12t0612100-01;Name=Os12t0612100-01;Locus_id=Os12g0612100;Note=Conserved hypothetical protein.;Transcript_evidence=AK101614 (DDBJ%2C Best hit);ORF_evidence=Q2QMA3 (UniProt);NIAS_FLcDNA=J033052E24;TENOR=Os12t0612100-01
Chr12	irgsp1_rep	five_prime_UTR	25892825	25892988	.	-	.	Parent=Os12t0612100-01
Chr12	irgsp1_rep	five_prime_UTR	25891689	25892059	.	-	.	Parent=Os12t0612100-01
Chr12	irgsp1_rep	CDS	25891616	25891688	.	-	0	Parent=Os12t0612100-01
Chr12	irgsp1_rep	CDS	25891109	25891224	.	-	2	Parent=Os12t0612100-01
Chr12	irgsp1_rep	CDS	25890968	25891027	.	-	0	Parent=Os12t0612100-01
Chr12	irgsp1_rep	CDS	25890389	25890613	.	-	0	Parent=Os12t0612100-01
Chr12	irgsp1_rep	CDS	25890118	25890300	.	-	0	Parent=Os12t0612100-01
Chr12	irgsp1_rep	CDS	25889406	25889657	.	-	0	Parent=Os12t0612100-01
Chr12	irgsp1_rep	CDS	25889114	25889311	.	-	0	Parent=Os12t0612100-01
Chr12	irgsp1_rep	three_prime_UTR	25888964	25889113	.	-	.	Parent=Os12t0612100-01
Chr12	irgsp1_rep	mRNA	25888971	25892863	.	-	.	ID=Os12t0612100-02;Name=Os12t0612100-02;Locus_id=Os12g0612100;Note=Conserved hypothetical protein.;Transcript_evidence=AK060783 (DDBJ%2C Best hit);ORF_evidence=Q2QMA3 (UniProt);NIAS_FLcDNA=001-033-C11;TENOR=Os12t0612100-02
Chr12	irgsp1_rep	five_prime_UTR	25892825	25892863	.	-	.	Parent=Os12t0612100-02
Chr12	irgsp1_rep	five_prime_UTR	25891689	25892059	.	-	.	Parent=Os12t0612100-02
Chr12	irgsp1_rep	CDS	25891616	25891688	.	-	0	Parent=Os12t0612100-02
Chr12	irgsp1_rep	CDS	25891109	25891224	.	-	2	Parent=Os12t0612100-02
Chr12	irgsp1_rep	CDS	25890968	25891027	.	-	0	Parent=Os12t0612100-02
Chr12	irgsp1_rep	CDS	25890389	25890613	.	-	0	Parent=Os12t0612100-02
Chr12	irgsp1_rep	CDS	25890118	25890300	.	-	0	Parent=Os12t0612100-02
Chr12	irgsp1_rep	CDS	25889406	25889657	.	-	0	Parent=Os12t0612100-02
Chr12	irgsp1_rep	CDS	25889114	25889311	.	-	0	Parent=Os12t0612100-02
Chr12	irgsp1_rep	three_prime_UTR	25888971	25889113	.	-	.	Parent=Os12t0612100-02
Chr12	irgsp1_rep	mRNA	25894325	25898041	.	-	.	ID=Os12t0612300-01;Name=Os12t0612300-01;Locus_id=Os12g0612300;Note=Conserved hypothetical protein.;Transcript_evidence=AK070162 (DDBJ%2C Best hit);ORF_evidence=B8BMZ3 (UniProt);NIAS_FLcDNA=J023046N14;Expression=AK070162;TENOR=Os12t0612300-01;KEGG=Os12t0612300-01
Chr12	irgsp1_rep	five_prime_UTR	25897892	25898041	.	-	.	Parent=Os12t0612300-01
Chr12	irgsp1_rep	CDS	25897874	25897891	.	-	0	Parent=Os12t0612300-01
Chr12	irgsp1_rep	CDS	25895736	25897174	.	-	0	Parent=Os12t0612300-01
Chr12	irgsp1_rep	CDS	25895357	25895483	.	-	1	Parent=Os12t0612300-01
Chr12	irgsp1_rep	CDS	25894995	25895096	.	-	0	Parent=Os12t0612300-01
Chr12	irgsp1_rep	CDS	25894817	25894870	.	-	0	Parent=Os12t0612300-01
Chr12	irgsp1_rep	three_prime_UTR	25894325	25894816	.	-	.	Parent=Os12t0612300-01
Chr12	irgsp1_rep	mRNA	25901498	25907550	.	-	.	ID=Os12t0612400-01;Name=Os12t0612400-01;Locus_id=Os12g0612400;Oryzabase Gene Symbol Synonym(s)=OsDjC83;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C83;Note=Similar to S-locus protein 5 (Fragment).;Transcript_evidence=AK120388 (DDBJ%2C Best hit);ORF_evidence=O64546 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=J013073N21;Oryzabase=12240;TENOR=Os12t0612400-01
Chr12	irgsp1_rep	five_prime_UTR	25906759	25907550	.	-	.	Parent=Os12t0612400-01
Chr12	irgsp1_rep	CDS	25906438	25906758	.	-	0	Parent=Os12t0612400-01
Chr12	irgsp1_rep	CDS	25905172	25905301	.	-	0	Parent=Os12t0612400-01
Chr12	irgsp1_rep	CDS	25904543	25905030	.	-	2	Parent=Os12t0612400-01
Chr12	irgsp1_rep	CDS	25904371	25904451	.	-	0	Parent=Os12t0612400-01
Chr12	irgsp1_rep	CDS	25904137	25904235	.	-	0	Parent=Os12t0612400-01
Chr12	irgsp1_rep	CDS	25903843	25903956	.	-	0	Parent=Os12t0612400-01
Chr12	irgsp1_rep	CDS	25903688	25903759	.	-	0	Parent=Os12t0612400-01
Chr12	irgsp1_rep	CDS	25903033	25903101	.	-	0	Parent=Os12t0612400-01
Chr12	irgsp1_rep	CDS	25902132	25902392	.	-	0	Parent=Os12t0612400-01
Chr12	irgsp1_rep	three_prime_UTR	25901498	25902131	.	-	.	Parent=Os12t0612400-01
Chr12	irgsp1_rep	mRNA	25901495	25906724	.	-	.	ID=Os12t0612400-02;Name=Os12t0612400-02;Locus_id=Os12g0612400;Oryzabase Gene Symbol Synonym(s)=OsDjC83;Oryzabase Gene Name Synonym(s)=DnaJ domain protein C83;Note=Similar to YUP8H12R.35 protein.;Transcript_evidence=AK064919 (DDBJ%2C Best hit);ORF_evidence=O64546 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C N-terminal (IPR001623),Heat shock protein DnaJ (IPR003095),Heat shock protein DnaJ%2C conserved site (IPR018253);NIAS_FLcDNA=J013000N02;Oryzabase=12240;TENOR=Os12t0612400-02
Chr12	irgsp1_rep	five_prime_UTR	25906723	25906724	.	-	.	Parent=Os12t0612400-02
Chr12	irgsp1_rep	CDS	25906438	25906722	.	-	0	Parent=Os12t0612400-02
Chr12	irgsp1_rep	CDS	25905172	25905301	.	-	0	Parent=Os12t0612400-02
Chr12	irgsp1_rep	CDS	25904543	25905030	.	-	2	Parent=Os12t0612400-02
Chr12	irgsp1_rep	CDS	25904371	25904451	.	-	0	Parent=Os12t0612400-02
Chr12	irgsp1_rep	CDS	25904137	25904235	.	-	0	Parent=Os12t0612400-02
Chr12	irgsp1_rep	CDS	25903843	25903956	.	-	0	Parent=Os12t0612400-02
Chr12	irgsp1_rep	CDS	25903688	25903759	.	-	0	Parent=Os12t0612400-02
Chr12	irgsp1_rep	CDS	25903033	25903101	.	-	0	Parent=Os12t0612400-02
Chr12	irgsp1_rep	CDS	25902132	25902392	.	-	0	Parent=Os12t0612400-02
Chr12	irgsp1_rep	three_prime_UTR	25901495	25902131	.	-	.	Parent=Os12t0612400-02
Chr12	irgsp1_rep	mRNA	25911188	25914643	.	-	.	ID=Os12t0612500-01;Name=Os12t0612500-01;Locus_id=Os12g0612500;Note=Methyltransferase small domain containing protein.;Transcript_evidence=AK287748 (DDBJ%2C Best hit);ORF_evidence=NP_201220.1 (RefSeq);GO=Biological Process: protein methylation (GO:0006479),Biological Process: methylation (GO:0032259),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: methyltransferase activity (GO:0008168),Molecular Function: protein methyltransferase activity (GO:0008276);InterPro=DNA methylase%2C N-6 adenine-specific%2C conserved site (IPR002052),Modification methylase HemK (IPR004556);NIAS_FLcDNA=J065152L17;TENOR=Os12t0612500-01;KEGG=Os12t0612500-01
Chr12	irgsp1_rep	five_prime_UTR	25914638	25914643	.	-	.	Parent=Os12t0612500-01
Chr12	irgsp1_rep	CDS	25913954	25914637	.	-	0	Parent=Os12t0612500-01
Chr12	irgsp1_rep	CDS	25913584	25913829	.	-	0	Parent=Os12t0612500-01
Chr12	irgsp1_rep	CDS	25912945	25913076	.	-	0	Parent=Os12t0612500-01
Chr12	irgsp1_rep	three_prime_UTR	25912885	25912944	.	-	.	Parent=Os12t0612500-01
Chr12	irgsp1_rep	three_prime_UTR	25911188	25911735	.	-	.	Parent=Os12t0612500-01
Chr12	irgsp1_rep	mRNA	25917389	25917832	.	-	.	ID=Os12t0612625-00;Name=Os12t0612625-00;Locus_id=Os12g0612625;Note=Similar to Preprotein translocase%2C SecY subunit containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QM98 (UniProt);GO=Biological Process: protein transport (GO:0015031),Cellular Component: membrane (GO:0016020),Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450);InterPro=SecY protein (IPR002208),SecY subunit domain (IPR023201);TENOR=Os12t0612625-00
Chr12	irgsp1_rep	CDS	25917389	25917832	.	-	0	Parent=Os12t0612625-00
Chr12	irgsp1_rep	mRNA	25920652	25927349	.	-	.	ID=Os12t0612700-01;Name=Os12t0612700-01;Locus_id=Os12g0612700;RAP-DB Gene Symbol Synonym(s)=HOX33%2C Oshox33%2C OsHox33%2C OSHB3%2C SIP22;RAP-DB Gene Name Synonym(s)=HOMEOBOX GENE 33%2C rice homeobox gene 33%2C Homeobox-leucine zipper protein HOX33%2C Homeodomain transcription factor HOX33%2C HD-ZIP protein HOX33%2C HOMEODOMAIN CONTAINING PROTEIN 3%2C SKIP interacting protein 22%2C SKIPa-interacting protein 22;CGSNL Gene Symbol=HOX33;CGSNL Gene Name=HOMEOBOX GENE 33;Oryzabase Gene Symbol Synonym(s)=Oshox33%2C OsHox33%2C OSHB3%2C HB3%2C SIP22%2C OsSIP22;Oryzabase Gene Name Synonym(s)=rice homeobox gene 33%2C Homeobox-leucine zipper protein HOX33%2C Homeodomain transcription factor HOX33%2C HD-ZIP protein HOX33%2C HOMEODOMAIN CONTAINING PROTEIN 3%2C SKIP interacting protein 22%2C SKIPa-interacting protein 22%2C SKIPa-interacting protein 22;Note=Class III homeodomain-leucine zipper (HD-Zip III) protein%2C Age-dependent leaf senescence;Transcript_evidence=AK102183;ORF_evidence=Q2QM96;GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: lipid binding (GO:0008289);InterPro=Homeobox domain-like (IPR009057),Homeobox domain (IPR001356),START-like domain (IPR023393),START domain (IPR002913),MEKHLA (IPR013978);NIAS_FLcDNA=J033086M14;Manual Curation=January 26%2C 2017;Literature_PMID=24302292;Oryzabase=8470;Expression=AK102183;TENOR=Os12t0612700-01;KEGG=Os12t0612700-01
Chr12	irgsp1_rep	five_prime_UTR	25927079	25927349	.	-	.	Parent=Os12t0612700-01
Chr12	irgsp1_rep	CDS	25926834	25927078	.	-	0	Parent=Os12t0612700-01
Chr12	irgsp1_rep	CDS	25925378	25925537	.	-	1	Parent=Os12t0612700-01
Chr12	irgsp1_rep	CDS	25925165	25925280	.	-	0	Parent=Os12t0612700-01
Chr12	irgsp1_rep	CDS	25924987	25925077	.	-	1	Parent=Os12t0612700-01
Chr12	irgsp1_rep	CDS	25924789	25924884	.	-	0	Parent=Os12t0612700-01
Chr12	irgsp1_rep	CDS	25924596	25924709	.	-	0	Parent=Os12t0612700-01
Chr12	irgsp1_rep	CDS	25924412	25924495	.	-	0	Parent=Os12t0612700-01
Chr12	irgsp1_rep	CDS	25924063	25924218	.	-	0	Parent=Os12t0612700-01
Chr12	irgsp1_rep	CDS	25923901	25923975	.	-	0	Parent=Os12t0612700-01
Chr12	irgsp1_rep	CDS	25923688	25923794	.	-	0	Parent=Os12t0612700-01
Chr12	irgsp1_rep	CDS	25923379	25923571	.	-	1	Parent=Os12t0612700-01
Chr12	irgsp1_rep	CDS	25923063	25923251	.	-	0	Parent=Os12t0612700-01
Chr12	irgsp1_rep	CDS	25922889	25922969	.	-	0	Parent=Os12t0612700-01
Chr12	irgsp1_rep	CDS	25922100	25922234	.	-	0	Parent=Os12t0612700-01
Chr12	irgsp1_rep	CDS	25921691	25922013	.	-	0	Parent=Os12t0612700-01
Chr12	irgsp1_rep	CDS	25921455	25921560	.	-	1	Parent=Os12t0612700-01
Chr12	irgsp1_rep	CDS	25921213	25921362	.	-	0	Parent=Os12t0612700-01
Chr12	irgsp1_rep	CDS	25920950	25921096	.	-	0	Parent=Os12t0612700-01
Chr12	irgsp1_rep	three_prime_UTR	25920652	25920949	.	-	.	Parent=Os12t0612700-01
Chr12	irgsp1_rep	mRNA	25920956	25927099	.	+	.	ID=Os12t0612850-00;Name=Os12t0612850-00;Locus_id=Os12g0612850;Note=Hypothetical protein.;Transcript_evidence=tplb0037d04 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0612850-00
Chr12	irgsp1_rep	CDS	25920956	25921095	.	+	0	Parent=Os12t0612850-00
Chr12	irgsp1_rep	CDS	25921212	25921345	.	+	1	Parent=Os12t0612850-00
Chr12	irgsp1_rep	CDS	25921438	25921551	.	+	2	Parent=Os12t0612850-00
Chr12	irgsp1_rep	CDS	25921679	25921881	.	+	2	Parent=Os12t0612850-00
Chr12	irgsp1_rep	three_prime_UTR	25921882	25922025	.	+	.	Parent=Os12t0612850-00
Chr12	irgsp1_rep	three_prime_UTR	25922115	25922280	.	+	.	Parent=Os12t0612850-00
Chr12	irgsp1_rep	three_prime_UTR	25923026	25923244	.	+	.	Parent=Os12t0612850-00
Chr12	irgsp1_rep	three_prime_UTR	25923368	25923600	.	+	.	Parent=Os12t0612850-00
Chr12	irgsp1_rep	three_prime_UTR	25923722	25923784	.	+	.	Parent=Os12t0612850-00
Chr12	irgsp1_rep	three_prime_UTR	25923892	25923974	.	+	.	Parent=Os12t0612850-00
Chr12	irgsp1_rep	three_prime_UTR	25924062	25924218	.	+	.	Parent=Os12t0612850-00
Chr12	irgsp1_rep	three_prime_UTR	25924412	25924495	.	+	.	Parent=Os12t0612850-00
Chr12	irgsp1_rep	three_prime_UTR	25924596	25924707	.	+	.	Parent=Os12t0612850-00
Chr12	irgsp1_rep	three_prime_UTR	25924787	25924884	.	+	.	Parent=Os12t0612850-00
Chr12	irgsp1_rep	three_prime_UTR	25924987	25925077	.	+	.	Parent=Os12t0612850-00
Chr12	irgsp1_rep	three_prime_UTR	25925165	25925287	.	+	.	Parent=Os12t0612850-00
Chr12	irgsp1_rep	three_prime_UTR	25925387	25925535	.	+	.	Parent=Os12t0612850-00
Chr12	irgsp1_rep	three_prime_UTR	25926832	25927099	.	+	.	Parent=Os12t0612850-00
Chr12	irgsp1_rep	mRNA	25953474	25957331	.	-	.	ID=Os12t0613000-01;Name=Os12t0613000-01;Locus_id=Os12g0613000;CGSNL Gene Symbol=HAP2B;CGSNL Gene Name=HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX;Oryzabase Gene Symbol Synonym(s)=OsHAP2B%2C NF-YA%2C CBF-B%2C NF-YA9%2C OsNF-YA9%2C NFYA9;Oryzabase Gene Name Synonym(s)=NUCLEAR FACTOR-Y subunit A9%2C NUCLEAR FACTOR-Y subunit NF-YA9%2C NF-YA transcription factor 9%2C NF-YA subunit 9%2C NF-YA family 9;Note=Similar to NF-YA subunit.;Transcript_evidence=AK065163 (DDBJ%2C Best hit);ORF_evidence=B6TY54 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Cellular Component: CCAAT-binding factor complex (GO:0016602),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=CCAAT-binding transcription factor%2C subunit B (IPR001289),CCAAT-binding factor%2C conserved site (IPR018362);NIAS_FLcDNA=J013002C07;Oryzabase=8474;Expression=AK065163;TENOR=Os12t0613000-01;KEGG=Os12t0613000-01
Chr12	irgsp1_rep	five_prime_UTR	25957180	25957331	.	-	.	Parent=Os12t0613000-01
Chr12	irgsp1_rep	five_prime_UTR	25956413	25956563	.	-	.	Parent=Os12t0613000-01
Chr12	irgsp1_rep	CDS	25956385	25956412	.	-	0	Parent=Os12t0613000-01
Chr12	irgsp1_rep	CDS	25955719	25955879	.	-	2	Parent=Os12t0613000-01
Chr12	irgsp1_rep	CDS	25955051	25955122	.	-	0	Parent=Os12t0613000-01
Chr12	irgsp1_rep	CDS	25954699	25954863	.	-	0	Parent=Os12t0613000-01
Chr12	irgsp1_rep	CDS	25953828	25954055	.	-	0	Parent=Os12t0613000-01
Chr12	irgsp1_rep	three_prime_UTR	25953474	25953827	.	-	.	Parent=Os12t0613000-01
Chr12	irgsp1_rep	mRNA	25960810	25964140	.	-	.	ID=Os12t0613100-00;Name=Os12t0613100-00;Locus_id=Os12g0613100;Oryzabase Gene Symbol Synonym(s)=OsCAT10;Oryzabase Gene Name Synonym(s)=cationic amino acid transporter 10;Note=Similar to Amino acid permease family protein.;Transcript_evidence=AK332141 (DDBJ);ORF_evidence=Q2QM92 (UniProt);GO=Biological Process: amino acid transmembrane transport (GO:0003333),Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: amino acid transmembrane transporter activity (GO:0015171);InterPro=Amino acid/polyamine transporter I (IPR002293),Amino acid permease domain (IPR004841),Cationic amino acid transporter (IPR015606);Oryzabase=18544;TENOR=Os12t0613100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	25963710	25964140	.	-	0	Parent=Os12t0613100-00
Chr12	irgsp1_rep	CDS	25962044	25962415	.	-	1	Parent=Os12t0613100-00
Chr12	irgsp1_rep	CDS	25960810	25961854	.	-	1	Parent=Os12t0613100-00
Chr12	irgsp1_rep	mRNA	25960847	25964139	.	+	.	ID=Os12t0613150-00;Name=Os12t0613150-00;Locus_id=Os12g0613150;Note=Hypothetical protein.;Transcript_evidence=tplb0044b08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0613150-00
Chr12	irgsp1_rep	five_prime_UTR	25960847	25960848	.	+	.	Parent=Os12t0613150-00
Chr12	irgsp1_rep	CDS	25960849	25961866	.	+	0	Parent=Os12t0613150-00
Chr12	irgsp1_rep	CDS	25962084	25962094	.	+	2	Parent=Os12t0613150-00
Chr12	irgsp1_rep	three_prime_UTR	25962095	25962398	.	+	.	Parent=Os12t0613150-00
Chr12	irgsp1_rep	three_prime_UTR	25963693	25964139	.	+	.	Parent=Os12t0613150-00
Chr12	irgsp1_rep	mRNA	25971080	25976050	.	-	.	ID=Os12t0613200-01;Name=Os12t0613200-01;Locus_id=Os12g0613200;Oryzabase Gene Symbol Synonym(s)=OsSET43%2C SDG717;Oryzabase Gene Name Synonym(s)=SET protein 43;Note=Hypothetical conserved gene.;Transcript_evidence=AK100275 (DDBJ%2C Best hit);ORF_evidence=B9GE94 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=GYF (IPR003169);NIAS_FLcDNA=J023073B16;Oryzabase=13406;TENOR=Os12t0613200-01
Chr12	irgsp1_rep	five_prime_UTR	25975934	25976050	.	-	.	Parent=Os12t0613200-01
Chr12	irgsp1_rep	CDS	25975910	25975933	.	-	0	Parent=Os12t0613200-01
Chr12	irgsp1_rep	CDS	25975559	25975707	.	-	0	Parent=Os12t0613200-01
Chr12	irgsp1_rep	CDS	25974995	25975451	.	-	1	Parent=Os12t0613200-01
Chr12	irgsp1_rep	CDS	25974784	25974906	.	-	0	Parent=Os12t0613200-01
Chr12	irgsp1_rep	CDS	25973268	25973555	.	-	0	Parent=Os12t0613200-01
Chr12	irgsp1_rep	CDS	25972817	25973167	.	-	0	Parent=Os12t0613200-01
Chr12	irgsp1_rep	CDS	25972403	25972702	.	-	0	Parent=Os12t0613200-01
Chr12	irgsp1_rep	CDS	25972077	25972314	.	-	0	Parent=Os12t0613200-01
Chr12	irgsp1_rep	CDS	25971372	25971998	.	-	2	Parent=Os12t0613200-01
Chr12	irgsp1_rep	CDS	25971080	25971290	.	-	2	Parent=Os12t0613200-01
Chr12	irgsp1_rep	mRNA	25966692	25976048	.	-	.	ID=Os12t0613200-02;Name=Os12t0613200-02;Locus_id=Os12g0613200;Oryzabase Gene Symbol Synonym(s)=OsSET43%2C SDG717;Oryzabase Gene Name Synonym(s)=SET protein 43;Note=Similar to Histone-lysine N-methyltransferase%2C H3 lysine-4 specific SET1 (EC 2.1.1.43) (Set1/Ash2 histone methyltransferase complex subunit SET1) (SET-domain-containing protein 1).;Transcript_evidence=AK068250 (DDBJ%2C Best hit);ORF_evidence=B9GE94 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=SET domain (IPR001214),GYF (IPR003169),Post-SET domain (IPR003616);NIAS_FLcDNA=J013139B12;Oryzabase=13406;Expression=AK068250;TENOR=Os12t0613200-02;KEGG=Os12t0613200-02 (EC:2.1.1.43)
Chr12	irgsp1_rep	five_prime_UTR	25975934	25976048	.	-	.	Parent=Os12t0613200-02
Chr12	irgsp1_rep	CDS	25975910	25975933	.	-	0	Parent=Os12t0613200-02
Chr12	irgsp1_rep	CDS	25975559	25975707	.	-	0	Parent=Os12t0613200-02
Chr12	irgsp1_rep	CDS	25974995	25975451	.	-	1	Parent=Os12t0613200-02
Chr12	irgsp1_rep	CDS	25974784	25974906	.	-	0	Parent=Os12t0613200-02
Chr12	irgsp1_rep	CDS	25973268	25973555	.	-	0	Parent=Os12t0613200-02
Chr12	irgsp1_rep	CDS	25972817	25973167	.	-	0	Parent=Os12t0613200-02
Chr12	irgsp1_rep	CDS	25972403	25972702	.	-	0	Parent=Os12t0613200-02
Chr12	irgsp1_rep	CDS	25972077	25972314	.	-	0	Parent=Os12t0613200-02
Chr12	irgsp1_rep	CDS	25971372	25971998	.	-	2	Parent=Os12t0613200-02
Chr12	irgsp1_rep	CDS	25970641	25971290	.	-	2	Parent=Os12t0613200-02
Chr12	irgsp1_rep	CDS	25970441	25970563	.	-	0	Parent=Os12t0613200-02
Chr12	irgsp1_rep	CDS	25970275	25970355	.	-	0	Parent=Os12t0613200-02
Chr12	irgsp1_rep	CDS	25969970	25970023	.	-	0	Parent=Os12t0613200-02
Chr12	irgsp1_rep	CDS	25969744	25969895	.	-	0	Parent=Os12t0613200-02
Chr12	irgsp1_rep	CDS	25969241	25969262	.	-	1	Parent=Os12t0613200-02
Chr12	irgsp1_rep	three_prime_UTR	25969220	25969240	.	-	.	Parent=Os12t0613200-02
Chr12	irgsp1_rep	three_prime_UTR	25968833	25968938	.	-	.	Parent=Os12t0613200-02
Chr12	irgsp1_rep	three_prime_UTR	25967862	25967881	.	-	.	Parent=Os12t0613200-02
Chr12	irgsp1_rep	three_prime_UTR	25967651	25967769	.	-	.	Parent=Os12t0613200-02
Chr12	irgsp1_rep	three_prime_UTR	25966949	25967030	.	-	.	Parent=Os12t0613200-02
Chr12	irgsp1_rep	three_prime_UTR	25966692	25966827	.	-	.	Parent=Os12t0613200-02
Chr12	irgsp1_rep	mRNA	25966692	25972219	.	-	.	ID=Os12t0613200-03;Name=Os12t0613200-03;Locus_id=Os12g0613200;Oryzabase Gene Symbol Synonym(s)=OsSET43%2C SDG717;Oryzabase Gene Name Synonym(s)=SET protein 43;Note=Hypothetical conserved gene.;Transcript_evidence=AK069599 (DDBJ%2C Best hit);ORF_evidence=B9GE94 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=SET domain (IPR001214),Post-SET domain (IPR003616);NIAS_FLcDNA=J023025P12;Oryzabase=13406;Expression=AK069599;TENOR=Os12t0613200-03;KEGG=Os12t0613200-03 (EC:2.1.1.43)
Chr12	irgsp1_rep	five_prime_UTR	25972219	25972219	.	-	.	Parent=Os12t0613200-03
Chr12	irgsp1_rep	CDS	25972077	25972218	.	-	0	Parent=Os12t0613200-03
Chr12	irgsp1_rep	CDS	25971372	25971998	.	-	2	Parent=Os12t0613200-03
Chr12	irgsp1_rep	CDS	25970641	25971290	.	-	2	Parent=Os12t0613200-03
Chr12	irgsp1_rep	CDS	25970441	25970563	.	-	0	Parent=Os12t0613200-03
Chr12	irgsp1_rep	CDS	25970275	25970355	.	-	0	Parent=Os12t0613200-03
Chr12	irgsp1_rep	CDS	25969970	25970023	.	-	0	Parent=Os12t0613200-03
Chr12	irgsp1_rep	CDS	25969744	25969895	.	-	0	Parent=Os12t0613200-03
Chr12	irgsp1_rep	CDS	25969241	25969262	.	-	1	Parent=Os12t0613200-03
Chr12	irgsp1_rep	three_prime_UTR	25969220	25969240	.	-	.	Parent=Os12t0613200-03
Chr12	irgsp1_rep	three_prime_UTR	25968833	25968938	.	-	.	Parent=Os12t0613200-03
Chr12	irgsp1_rep	three_prime_UTR	25967736	25967881	.	-	.	Parent=Os12t0613200-03
Chr12	irgsp1_rep	three_prime_UTR	25966949	25967625	.	-	.	Parent=Os12t0613200-03
Chr12	irgsp1_rep	three_prime_UTR	25966692	25966827	.	-	.	Parent=Os12t0613200-03
Chr12	irgsp1_rep	mRNA	25977889	25982348	.	-	.	ID=Os12t0613250-00;Name=Os12t0613250-00;Locus_id=Os12g0613250;Oryzabase Gene Symbol Synonym(s)=SIP17;Oryzabase Gene Name Synonym(s)=SKIP interacting protein 17%2C SKIPa-interacting protein 17%2C SKIPa-interacting protein 17;Note=Similar to BTB/POZ%3B Superoxide dismutase%2C copper/zinc binding%3B NPH3.;Transcript_evidence=EU368707 (DDBJ%2C Best hit);ORF_evidence=A2Q365 (UniProt);GO=Biological Process: response to light stimulus (GO:0009416),Molecular Function: signal transducer activity (GO:0004871),Molecular Function: protein binding (GO:0005515);InterPro=BTB/POZ-like (IPR000210),NPH3 (IPR004249),BTB/POZ fold (IPR011333),BTB/POZ (IPR013069);Oryzabase=9949;TENOR=Os12t0613250-00;KEGG=Os12t0613250-00
Chr12	irgsp1_rep	five_prime_UTR	25982285	25982348	.	-	.	Parent=Os12t0613250-00
Chr12	irgsp1_rep	CDS	25982226	25982284	.	-	0	Parent=Os12t0613250-00
Chr12	irgsp1_rep	CDS	25980760	25980829	.	-	1	Parent=Os12t0613250-00
Chr12	irgsp1_rep	CDS	25979270	25980466	.	-	0	Parent=Os12t0613250-00
Chr12	irgsp1_rep	CDS	25977889	25978515	.	-	0	Parent=Os12t0613250-00
Chr12	irgsp1_rep	mRNA	25984514	25987976	.	-	.	ID=Os12t0613300-01;Name=Os12t0613300-01;Locus_id=Os12g0613300;Oryzabase Gene Symbol Synonym(s)=BIP127;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 127%2C BRI1-interacting protein 127%2C brassinosteroid receptor kinase-interacting protein 127;Note=Similar to Single myb histone 6.;Transcript_evidence=AK100618 (DDBJ%2C Best hit);ORF_evidence=Q761Y7 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Histone H1/H5 (IPR005818),Homeodomain-like (IPR009057),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=J023108E10;Oryzabase=13688;Expression=AK100618;TENOR=Os12t0613300-01;KEGG=Os12t0613300-01
Chr12	irgsp1_rep	five_prime_UTR	25987683	25987976	.	-	.	Parent=Os12t0613300-01
Chr12	irgsp1_rep	five_prime_UTR	25987475	25987528	.	-	.	Parent=Os12t0613300-01
Chr12	irgsp1_rep	CDS	25987325	25987474	.	-	0	Parent=Os12t0613300-01
Chr12	irgsp1_rep	CDS	25987023	25987234	.	-	0	Parent=Os12t0613300-01
Chr12	irgsp1_rep	CDS	25986827	25986911	.	-	1	Parent=Os12t0613300-01
Chr12	irgsp1_rep	CDS	25986368	25986451	.	-	0	Parent=Os12t0613300-01
Chr12	irgsp1_rep	CDS	25985394	25985741	.	-	0	Parent=Os12t0613300-01
Chr12	irgsp1_rep	CDS	25985044	25985058	.	-	0	Parent=Os12t0613300-01
Chr12	irgsp1_rep	three_prime_UTR	25984997	25985043	.	-	.	Parent=Os12t0613300-01
Chr12	irgsp1_rep	three_prime_UTR	25984514	25984896	.	-	.	Parent=Os12t0613300-01
Chr12	irgsp1_rep	mRNA	25984514	25987922	.	-	.	ID=Os12t0613300-02;Name=Os12t0613300-02;Locus_id=Os12g0613300;Oryzabase Gene Symbol Synonym(s)=BIP127;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 127%2C BRI1-interacting protein 127%2C brassinosteroid receptor kinase-interacting protein 127;Note=Similar to Single myb histone 6.;Transcript_evidence=AK105660 (DDBJ%2C Best hit);ORF_evidence=Q761Y7 (UniProt);GO=Biological Process: nucleosome assembly (GO:0006334),Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleosome (GO:0000786),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=SANT domain%2C DNA binding (IPR001005),Histone H1/H5 (IPR005818),Homeodomain-like (IPR009057),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Homeodomain-related (IPR012287),Myb%2C DNA-binding (IPR014778),Transcription regulator HTH%2C Myb-type%2C DNA-binding (IPR017930);NIAS_FLcDNA=001-200-G11;Oryzabase=13688;Expression=AK105660;TENOR=Os12t0613300-02;KEGG=Os12t0613300-02
Chr12	irgsp1_rep	five_prime_UTR	25987683	25987922	.	-	.	Parent=Os12t0613300-02
Chr12	irgsp1_rep	five_prime_UTR	25987475	25987583	.	-	.	Parent=Os12t0613300-02
Chr12	irgsp1_rep	CDS	25987325	25987474	.	-	0	Parent=Os12t0613300-02
Chr12	irgsp1_rep	CDS	25987023	25987234	.	-	0	Parent=Os12t0613300-02
Chr12	irgsp1_rep	CDS	25986827	25986911	.	-	1	Parent=Os12t0613300-02
Chr12	irgsp1_rep	CDS	25986368	25986451	.	-	0	Parent=Os12t0613300-02
Chr12	irgsp1_rep	CDS	25985394	25985741	.	-	0	Parent=Os12t0613300-02
Chr12	irgsp1_rep	CDS	25985044	25985058	.	-	0	Parent=Os12t0613300-02
Chr12	irgsp1_rep	three_prime_UTR	25984514	25985043	.	-	.	Parent=Os12t0613300-02
Chr12	irgsp1_rep	mRNA	25990073	25993156	.	+	.	ID=Os12t0613500-01;Name=Os12t0613500-01;Locus_id=Os12g0613500;Oryzabase Gene Symbol Synonym(s)=BIP132;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 132%2C BRI1-interacting protein 132%2C brassinosteroid receptor kinase-interacting protein 132;Note=SRP40%2C C-terminal domain containing protein.;Transcript_evidence=AK101273 (DDBJ%2C Best hit);ORF_evidence=Q2QM88 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=LisH dimerisation motif (IPR006594),SRP40%2C C-terminal (IPR007718);NIAS_FLcDNA=J033033A11;Oryzabase=13705;Expression=AK101273;TENOR=Os12t0613500-01;KEGG=Os12t0613500-01
Chr12	irgsp1_rep	five_prime_UTR	25990073	25990081	.	+	.	Parent=Os12t0613500-01
Chr12	irgsp1_rep	CDS	25990082	25990309	.	+	0	Parent=Os12t0613500-01
Chr12	irgsp1_rep	CDS	25990403	25990470	.	+	0	Parent=Os12t0613500-01
Chr12	irgsp1_rep	CDS	25990599	25990642	.	+	1	Parent=Os12t0613500-01
Chr12	irgsp1_rep	CDS	25990731	25991479	.	+	2	Parent=Os12t0613500-01
Chr12	irgsp1_rep	CDS	25991950	25992039	.	+	0	Parent=Os12t0613500-01
Chr12	irgsp1_rep	CDS	25992618	25992679	.	+	0	Parent=Os12t0613500-01
Chr12	irgsp1_rep	CDS	25992804	25992909	.	+	1	Parent=Os12t0613500-01
Chr12	irgsp1_rep	three_prime_UTR	25992910	25993156	.	+	.	Parent=Os12t0613500-01
Chr12	irgsp1_rep	mRNA	25990082	25991040	.	+	.	ID=Os12t0613500-02;Name=Os12t0613500-02;Locus_id=Os12g0613500;Oryzabase Gene Symbol Synonym(s)=BIP132;Oryzabase Gene Name Synonym(s)=brassinosteroid receptor kinase (BRI1)-interacting protein 132%2C BRI1-interacting protein 132%2C brassinosteroid receptor kinase-interacting protein 132;Note=Similar to SRP40%2C C-terminal domain containing protein%2C expressed.;Transcript_evidence=AK058205 (DDBJ%2C Best hit);ORF_evidence=Q2QM88 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=LisH dimerisation motif (IPR006594);NIAS_FLcDNA=001-010-A07;Oryzabase=13705;TENOR=Os12t0613500-02
Chr12	irgsp1_rep	CDS	25990082	25990309	.	+	0	Parent=Os12t0613500-02
Chr12	irgsp1_rep	CDS	25990403	25990470	.	+	0	Parent=Os12t0613500-02
Chr12	irgsp1_rep	CDS	25990599	25990642	.	+	1	Parent=Os12t0613500-02
Chr12	irgsp1_rep	CDS	25990731	25991040	.	+	2	Parent=Os12t0613500-02
Chr12	irgsp1_rep	mRNA	25998427	26001637	.	+	.	ID=Os12t0613600-01;Name=Os12t0613600-01;Locus_id=Os12g0613600;CGSNL Gene Symbol=REM6.3;CGSNL Gene Name=REMORIN 6.3;Oryzabase Gene Symbol Synonym(s)=OsREM6.3;Oryzabase Gene Name Synonym(s)=Remorin 6.3%2C remorin group 6 member 3;Note=Remorin%2C C-terminal region domain containing protein.;Transcript_evidence=AK111002 (DDBJ%2C Best hit);ORF_evidence=Q2QM85 (UniProt);InterPro=Remorin%2C C-terminal (IPR005516);NIAS_FLcDNA=002-174-F01;Oryzabase=20280;Expression=AK111002;TENOR=Os12t0613600-01;KEGG=Os12t0613600-01
Chr12	irgsp1_rep	five_prime_UTR	25998427	25998578	.	+	.	Parent=Os12t0613600-01
Chr12	irgsp1_rep	CDS	25998579	25998608	.	+	0	Parent=Os12t0613600-01
Chr12	irgsp1_rep	CDS	25999419	25999596	.	+	0	Parent=Os12t0613600-01
Chr12	irgsp1_rep	CDS	25999678	26000461	.	+	2	Parent=Os12t0613600-01
Chr12	irgsp1_rep	CDS	26000579	26000660	.	+	1	Parent=Os12t0613600-01
Chr12	irgsp1_rep	CDS	26001412	26001621	.	+	0	Parent=Os12t0613600-01
Chr12	irgsp1_rep	three_prime_UTR	26001622	26001637	.	+	.	Parent=Os12t0613600-01
Chr12	irgsp1_rep	mRNA	26002370	26008343	.	-	.	ID=Os12t0613700-01;Name=Os12t0613700-01;Locus_id=Os12g0613700;CGSNL Gene Symbol=ARF6B;CGSNL Gene Name=AUXIN RESPONSE FACTOR 6B;Oryzabase Gene Symbol Synonym(s)=OsARF6b%2C OsARF25%2C ARF25;Oryzabase Gene Name Synonym(s)=auxin response factor-6B%2C auxin response factor 6B%2C auxin response factor-25%2C auxin response factor 25;Note=Transcriptional factor B3 family protein.;Transcript_evidence=AK121703 (DDBJ%2C Best hit);ORF_evidence=Q2QM84 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Biological Process: response to hormone stimulus (GO:0009725),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein dimerization activity (GO:0046983);InterPro=AUX/IAA protein (IPR003311),Transcriptional factor B3 (IPR003340),Auxin response factor (IPR010525),Aux/IAA-ARF-dimerisation (IPR011525),DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=J033074F07;Oryzabase=9993;Expression=AK121703;TENOR=Os12t0613700-01;KEGG=Os12t0613700-01
Chr12	irgsp1_rep	five_prime_UTR	26007524	26008343	.	-	.	Parent=Os12t0613700-01
Chr12	irgsp1_rep	CDS	26007466	26007523	.	-	0	Parent=Os12t0613700-01
Chr12	irgsp1_rep	CDS	26006967	26007079	.	-	2	Parent=Os12t0613700-01
Chr12	irgsp1_rep	CDS	26006623	26006721	.	-	0	Parent=Os12t0613700-01
Chr12	irgsp1_rep	CDS	26006489	26006545	.	-	0	Parent=Os12t0613700-01
Chr12	irgsp1_rep	CDS	26006237	26006392	.	-	0	Parent=Os12t0613700-01
Chr12	irgsp1_rep	CDS	26006066	26006150	.	-	0	Parent=Os12t0613700-01
Chr12	irgsp1_rep	CDS	26005652	26005742	.	-	2	Parent=Os12t0613700-01
Chr12	irgsp1_rep	CDS	26005394	26005558	.	-	1	Parent=Os12t0613700-01
Chr12	irgsp1_rep	CDS	26005188	26005310	.	-	1	Parent=Os12t0613700-01
Chr12	irgsp1_rep	CDS	26005039	26005114	.	-	1	Parent=Os12t0613700-01
Chr12	irgsp1_rep	CDS	26004719	26004875	.	-	0	Parent=Os12t0613700-01
Chr12	irgsp1_rep	CDS	26003513	26004642	.	-	2	Parent=Os12t0613700-01
Chr12	irgsp1_rep	CDS	26003026	26003216	.	-	0	Parent=Os12t0613700-01
Chr12	irgsp1_rep	CDS	26002727	26002925	.	-	1	Parent=Os12t0613700-01
Chr12	irgsp1_rep	three_prime_UTR	26002370	26002726	.	-	.	Parent=Os12t0613700-01
Chr12	irgsp1_rep	mRNA	26002417	26008339	.	-	.	ID=Os12t0613700-02;Name=Os12t0613700-02;Locus_id=Os12g0613700;CGSNL Gene Symbol=ARF6B;CGSNL Gene Name=AUXIN RESPONSE FACTOR 6B;Oryzabase Gene Symbol Synonym(s)=OsARF6b%2C OsARF25%2C ARF25;Oryzabase Gene Name Synonym(s)=auxin response factor-6B%2C auxin response factor 6B%2C auxin response factor-25%2C auxin response factor 25;Note=Similar to Auxin response factor 25.;Transcript_evidence=AK065025 (DDBJ%2C Best hit);ORF_evidence=Q2QM84 (UniProt);InterPro=DNA-binding pseudobarrel domain (IPR015300);NIAS_FLcDNA=J013001G10;Oryzabase=9993;Expression=AK065025;TENOR=Os12t0613700-02;KEGG=Os12t0613700-02
Chr12	irgsp1_rep	five_prime_UTR	26007524	26008339	.	-	.	Parent=Os12t0613700-02
Chr12	irgsp1_rep	CDS	26007466	26007523	.	-	0	Parent=Os12t0613700-02
Chr12	irgsp1_rep	CDS	26006967	26007079	.	-	2	Parent=Os12t0613700-02
Chr12	irgsp1_rep	CDS	26006623	26006721	.	-	0	Parent=Os12t0613700-02
Chr12	irgsp1_rep	CDS	26006489	26006545	.	-	0	Parent=Os12t0613700-02
Chr12	irgsp1_rep	CDS	26006237	26006392	.	-	0	Parent=Os12t0613700-02
Chr12	irgsp1_rep	CDS	26006098	26006160	.	-	0	Parent=Os12t0613700-02
Chr12	irgsp1_rep	three_prime_UTR	26006066	26006097	.	-	.	Parent=Os12t0613700-02
Chr12	irgsp1_rep	three_prime_UTR	26005652	26005742	.	-	.	Parent=Os12t0613700-02
Chr12	irgsp1_rep	three_prime_UTR	26005394	26005558	.	-	.	Parent=Os12t0613700-02
Chr12	irgsp1_rep	three_prime_UTR	26005188	26005310	.	-	.	Parent=Os12t0613700-02
Chr12	irgsp1_rep	three_prime_UTR	26005039	26005114	.	-	.	Parent=Os12t0613700-02
Chr12	irgsp1_rep	three_prime_UTR	26004719	26004875	.	-	.	Parent=Os12t0613700-02
Chr12	irgsp1_rep	three_prime_UTR	26003513	26004642	.	-	.	Parent=Os12t0613700-02
Chr12	irgsp1_rep	three_prime_UTR	26003026	26003216	.	-	.	Parent=Os12t0613700-02
Chr12	irgsp1_rep	three_prime_UTR	26002417	26002925	.	-	.	Parent=Os12t0613700-02
Chr12	irgsp1_rep	mRNA	26018189	26020180	.	+	.	ID=Os12t0613850-00;Name=Os12t0613850-00;Locus_id=Os12g0613850;Note=Similar to Galactosyltransferase family.;Transcript_evidence=ab initio prediction;ORF_evidence=B6SVW0 (UniProt);GO=Biological Process: protein glycosylation (GO:0006486),Cellular Component: membrane (GO:0016020),Molecular Function: sugar binding (GO:0005529),Molecular Function: galactosyltransferase activity (GO:0008378);InterPro=Galectin%2C carbohydrate recognition domain (IPR001079),Glycosyl transferase%2C family 31 (IPR002659),Concanavalin A-like lectin/glucanase (IPR008985),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320);TENOR=Os12t0613850-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	26018189	26018275	.	+	0	Parent=Os12t0613850-00
Chr12	irgsp1_rep	CDS	26018384	26018674	.	+	0	Parent=Os12t0613850-00
Chr12	irgsp1_rep	CDS	26019304	26019432	.	+	0	Parent=Os12t0613850-00
Chr12	irgsp1_rep	CDS	26019526	26019699	.	+	0	Parent=Os12t0613850-00
Chr12	irgsp1_rep	CDS	26019778	26019885	.	+	0	Parent=Os12t0613850-00
Chr12	irgsp1_rep	CDS	26019974	26020180	.	+	0	Parent=Os12t0613850-00
Chr12	irgsp1_rep	mRNA	26021767	26026110	.	+	.	ID=Os12t0614000-01;Name=Os12t0614000-01;Locus_id=Os12g0614000;Oryzabase Gene Symbol Synonym(s)=OsMED19a;Oryzabase Gene Name Synonym(s)=Mediator complex protein OsMED19a;Note=Conserved hypothetical protein.;Transcript_evidence=AK068768 (DDBJ%2C Best hit);ORF_evidence=B8BN00 (UniProt);NIAS_FLcDNA=J013162A19;Oryzabase=18699;TENOR=Os12t0614000-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	26021767	26023428	.	+	.	Parent=Os12t0614000-01
Chr12	irgsp1_rep	CDS	26023429	26023459	.	+	0	Parent=Os12t0614000-01
Chr12	irgsp1_rep	CDS	26023885	26024171	.	+	2	Parent=Os12t0614000-01
Chr12	irgsp1_rep	CDS	26024256	26024495	.	+	0	Parent=Os12t0614000-01
Chr12	irgsp1_rep	CDS	26024585	26024644	.	+	0	Parent=Os12t0614000-01
Chr12	irgsp1_rep	CDS	26024739	26024783	.	+	0	Parent=Os12t0614000-01
Chr12	irgsp1_rep	three_prime_UTR	26024784	26024877	.	+	.	Parent=Os12t0614000-01
Chr12	irgsp1_rep	three_prime_UTR	26025709	26026110	.	+	.	Parent=Os12t0614000-01
Chr12	irgsp1_rep	mRNA	26024091	26025881	.	-	.	ID=Os12t0614050-00;Name=Os12t0614050-00;Locus_id=Os12g0614050;Note=Hypothetical gene.;Transcript_evidence=BT019058 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0614050-00
Chr12	irgsp1_rep	five_prime_UTR	26025753	26025881	.	-	.	Parent=Os12t0614050-00
Chr12	irgsp1_rep	five_prime_UTR	26024737	26024893	.	-	.	Parent=Os12t0614050-00
Chr12	irgsp1_rep	five_prime_UTR	26024583	26024642	.	-	.	Parent=Os12t0614050-00
Chr12	irgsp1_rep	five_prime_UTR	26024475	26024493	.	-	.	Parent=Os12t0614050-00
Chr12	irgsp1_rep	CDS	26024246	26024474	.	-	0	Parent=Os12t0614050-00
Chr12	irgsp1_rep	CDS	26024091	26024167	.	-	2	Parent=Os12t0614050-00
Chr12	irgsp1_rep	mRNA	26026407	26027780	.	-	.	ID=Os12t0614100-00;Name=Os12t0614100-00;Locus_id=Os12g0614100;Note=Similar to Lipase family protein.;Transcript_evidence=BT042072 (DDBJ);ORF_evidence=Q2QM82 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921);TENOR=Os12t0614100-00
Chr12	irgsp1_rep	CDS	26026407	26027780	.	-	0	Parent=Os12t0614100-00
Chr12	irgsp1_rep	mRNA	26034041	26035237	.	-	.	ID=Os12t0614200-00;Name=Os12t0614200-00;Locus_id=Os12g0614200;Note=Similar to Lipase family protein.;Transcript_evidence=BT042072 (DDBJ);ORF_evidence=Q2QM81 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921);TENOR=Os12t0614200-00
Chr12	irgsp1_rep	CDS	26034041	26035237	.	-	0	Parent=Os12t0614200-00
Chr12	irgsp1_rep	mRNA	26034075	26035437	.	+	.	ID=Os12t0614201-01;Name=Os12t0614201-01;Locus_id=Os12g0614201;Note=Conserved hypothetical protein.;Transcript_evidence=AK243381 (DDBJ%2C Best hit);ORF_evidence=NP_001177060.1 (RefSeq);NIAS_FLcDNA=J100063C15;TENOR=Os12t0614201-01;KEGG=Os12t0614201-01
Chr12	irgsp1_rep	five_prime_UTR	26034075	26034292	.	+	.	Parent=Os12t0614201-01
Chr12	irgsp1_rep	CDS	26034293	26034964	.	+	0	Parent=Os12t0614201-01
Chr12	irgsp1_rep	three_prime_UTR	26034965	26035437	.	+	.	Parent=Os12t0614201-01
Chr12	irgsp1_rep	mRNA	26045658	26046857	.	-	.	ID=Os12t0614500-00;Name=Os12t0614500-00;Locus_id=Os12g0614500;Note=Similar to Lipase family protein.;Transcript_evidence=BT042072 (DDBJ);ORF_evidence=Q2QM78 (UniProt);GO=Biological Process: lipid metabolic process (GO:0006629),Molecular Function: triglyceride lipase activity (GO:0004806);InterPro=Lipase%2C class 3 (IPR002921);TENOR=Os12t0614500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	26045658	26046857	.	-	0	Parent=Os12t0614500-00
Chr12	irgsp1_rep	mRNA	26055221	26056980	.	+	.	ID=Os12t0614600-01;Name=Os12t0614600-01;Locus_id=Os12g0614600;RAP-DB Gene Symbol Synonym(s)=OsPID;RAP-DB Gene Name Synonym(s)=OsPINOID;CGSNL Gene Symbol=BIF2;CGSNL Gene Name=BARREN INFLORESCENCE 2;Oryzabase Gene Symbol Synonym(s)=bif2%2C Osbif2%2C OsBIF2%2C OsPID%2C PID;Oryzabase Gene Name Synonym(s)=barren inflorescence2%2C barren inflorescence2-like serine/threonine protein kinase%2C rice ortholog of PINOID%2C OsPINOID%2C PINOID;Note=Protein kinase PINOID%2C Control of polar auxin transport%2C Regulation of stigma and ovule initiation%2C Promotion of pistil and stamen development;Transcript_evidence=AK106290;ORF_evidence=Q2QM77;GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: ATP binding (GO:0005524);InterPro=Protein kinase-like domain superfamily (IPR011009),Protein kinase domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271);NIAS_FLcDNA=002-101-B02;Manual Curation=April 25%2C 2019;Literature_PMID=30926655,30918083,17303594;Oryzabase=7332;Expression=AK106290;TENOR=Os12t0614600-01;KEGG=Os12t0614600-01 (EC:2.7.11.1);Subcellular location=nucleus (GO:0005634), cytoplasm (GO:0005737)
Chr12	irgsp1_rep	five_prime_UTR	26055221	26055310	.	+	.	Parent=Os12t0614600-01
Chr12	irgsp1_rep	CDS	26055311	26056765	.	+	0	Parent=Os12t0614600-01
Chr12	irgsp1_rep	three_prime_UTR	26056766	26056980	.	+	.	Parent=Os12t0614600-01
Chr12	irgsp1_rep	mRNA	26073324	26074945	.	+	.	ID=Os12t0614800-00;Name=Os12t0614800-00;Locus_id=Os12g0614800;CGSNL Gene Symbol=RLCK374;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 374;Oryzabase Gene Symbol Synonym(s)=OsRLCK374;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 374;Note=Similar to cDNA clone:002-112-E04%2C full insert sequence.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QM75 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EGF-like calcium-binding (IPR001881),EGF-like calcium-binding%2C conserved site (IPR018097);Oryzabase=19044;TENOR=Os12t0614800-00;KEGG=Os12t0614800-00
Chr12	irgsp1_rep	CDS	26073324	26074281	.	+	0	Parent=Os12t0614800-00
Chr12	irgsp1_rep	CDS	26074650	26074945	.	+	2	Parent=Os12t0614800-00
Chr12	irgsp1_rep	mRNA	26075077	26076201	.	+	.	ID=Os12t0614851-00;Name=Os12t0614851-00;Locus_id=Os12g0614851;CGSNL Gene Symbol=RLCK374;CGSNL Gene Name=RECEPTOR-LIKE CYTOPLASMIC KINASE 374;Oryzabase Gene Symbol Synonym(s)=OsRLCK374;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 374;Note=Serine/threonine protein kinase domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=Q2QM75 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);Oryzabase=19044;TENOR=Os12t0614851-00;KEGG=Os12t0614851-00
Chr12	irgsp1_rep	CDS	26075077	26076201	.	+	0	Parent=Os12t0614851-00
Chr12	irgsp1_rep	mRNA	26081703	26086820	.	-	.	ID=Os12t0614900-01;Name=Os12t0614900-01;Locus_id=Os12g0614900;Note=Hypothetical protein.;Transcript_evidence=AK066039 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013046O19;Expression=AK066039;TENOR=Os12t0614900-01;KEGG=Os12t0614900-01
Chr12	irgsp1_rep	five_prime_UTR	26086456	26086820	.	-	.	Parent=Os12t0614900-01
Chr12	irgsp1_rep	five_prime_UTR	26084768	26085353	.	-	.	Parent=Os12t0614900-01
Chr12	irgsp1_rep	CDS	26084718	26084767	.	-	0	Parent=Os12t0614900-01
Chr12	irgsp1_rep	CDS	26083994	26084043	.	-	1	Parent=Os12t0614900-01
Chr12	irgsp1_rep	CDS	26083604	26083905	.	-	2	Parent=Os12t0614900-01
Chr12	irgsp1_rep	three_prime_UTR	26083123	26083603	.	-	.	Parent=Os12t0614900-01
Chr12	irgsp1_rep	three_prime_UTR	26081703	26082126	.	-	.	Parent=Os12t0614900-01
Chr12	irgsp1_rep	mRNA	26081664	26086819	.	-	.	ID=Os12t0614900-02;Name=Os12t0614900-02;Locus_id=Os12g0614900;Note=Hypothetical gene.;Transcript_evidence=AK100110 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J023005H19;Expression=AK100110;TENOR=Os12t0614900-02;KEGG=Os12t0614900-02
Chr12	irgsp1_rep	five_prime_UTR	26086818	26086819	.	-	.	Parent=Os12t0614900-02
Chr12	irgsp1_rep	CDS	26086452	26086817	.	-	0	Parent=Os12t0614900-02
Chr12	irgsp1_rep	three_prime_UTR	26083123	26086451	.	-	.	Parent=Os12t0614900-02
Chr12	irgsp1_rep	three_prime_UTR	26081664	26082126	.	-	.	Parent=Os12t0614900-02
Chr12	irgsp1_rep	mRNA	26083058	26085962	.	+	.	ID=Os12t0615000-00;Name=Os12t0615000-00;Locus_id=Os12g0615000;Note=Tyrosine protein kinase domain containing protein.;Transcript_evidence=EU974885 (DDBJ);ORF_evidence=Q2QM74 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),EGF-like calcium-binding (IPR001881),Epidermal growth factor-like (IPR006210),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EGF-like calcium-binding%2C conserved site (IPR018097);TENOR=Os12t0615000-00;KEGG=Os12t0615000-00
Chr12	irgsp1_rep	CDS	26083058	26084051	.	+	0	Parent=Os12t0615000-00
Chr12	irgsp1_rep	CDS	26084504	26084686	.	+	2	Parent=Os12t0615000-00
Chr12	irgsp1_rep	CDS	26084788	26085962	.	+	2	Parent=Os12t0615000-00
Chr12	irgsp1_rep	mRNA	26087069	26090656	.	+	.	ID=Os12t0615100-01;Name=Os12t0615100-01;Locus_id=Os12g0615100;CGSNL Gene Symbol=WAK128;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 128;Oryzabase Gene Symbol Synonym(s)=OsWAK128;Oryzabase Gene Name Synonym(s)=Wall-associated kinase gene 128;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=AK067120 (DDBJ%2C Best hit);ORF_evidence=Q2QM74 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),EGF-like calcium-binding (IPR001881),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EGF-like calcium-binding%2C conserved site (IPR018097),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=J013096K04;Oryzabase=8043;TENOR=Os12t0615100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	26087069	26087119	.	+	.	Parent=Os12t0615100-01
Chr12	irgsp1_rep	CDS	26087120	26087168	.	+	0	Parent=Os12t0615100-01
Chr12	irgsp1_rep	CDS	26088768	26088950	.	+	2	Parent=Os12t0615100-01
Chr12	irgsp1_rep	CDS	26089285	26090453	.	+	2	Parent=Os12t0615100-01
Chr12	irgsp1_rep	three_prime_UTR	26090454	26090656	.	+	.	Parent=Os12t0615100-01
Chr12	irgsp1_rep	mRNA	26087466	26088874	.	+	.	ID=Os12t0615100-02;Name=Os12t0615100-02;Locus_id=Os12g0615100;CGSNL Gene Symbol=WAK128;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 128;Oryzabase Gene Symbol Synonym(s)=OsWAK128;Oryzabase Gene Name Synonym(s)=Wall-associated kinase gene 128;Note=Hypothetical conserved gene.;Transcript_evidence=AK064574 (DDBJ%2C Best hit);ORF_evidence=Q2QM75 (UniProt);NIAS_FLcDNA=002-112-E04;Oryzabase=8043;Expression=AK064574;TENOR=Os12t0615100-02;KEGG=Os12t0615100-02
Chr12	irgsp1_rep	five_prime_UTR	26087466	26087731	.	+	.	Parent=Os12t0615100-02
Chr12	irgsp1_rep	CDS	26087732	26088688	.	+	0	Parent=Os12t0615100-02
Chr12	irgsp1_rep	three_prime_UTR	26088689	26088874	.	+	.	Parent=Os12t0615100-02
Chr12	irgsp1_rep	mRNA	26088329	26090086	.	-	.	ID=Os12t0615150-00;Name=Os12t0615150-00;Locus_id=Os12g0615150;Note=Hypothetical protein.;Transcript_evidence=tplb0029l08 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0615150-00
Chr12	irgsp1_rep	five_prime_UTR	26089491	26090086	.	-	.	Parent=Os12t0615150-00
Chr12	irgsp1_rep	five_prime_UTR	26089029	26089108	.	-	.	Parent=Os12t0615150-00
Chr12	irgsp1_rep	CDS	26088744	26089028	.	-	0	Parent=Os12t0615150-00
Chr12	irgsp1_rep	three_prime_UTR	26088716	26088743	.	-	.	Parent=Os12t0615150-00
Chr12	irgsp1_rep	three_prime_UTR	26088329	26088594	.	-	.	Parent=Os12t0615150-00
Chr12	irgsp1_rep	mRNA	26093271	26097944	.	-	.	ID=Os12t0615200-01;Name=Os12t0615200-01;Locus_id=Os12g0615200;Note=Hypothetical protein.;Transcript_evidence=AK119304 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=001-130-F05;Expression=AK119304;TENOR=Os12t0615200-01;KEGG=Os12t0615200-01
Chr12	irgsp1_rep	five_prime_UTR	26097913	26097944	.	-	.	Parent=Os12t0615200-01
Chr12	irgsp1_rep	CDS	26097754	26097912	.	-	0	Parent=Os12t0615200-01
Chr12	irgsp1_rep	CDS	26095926	26096048	.	-	0	Parent=Os12t0615200-01
Chr12	irgsp1_rep	three_prime_UTR	26093271	26095925	.	-	.	Parent=Os12t0615200-01
Chr12	irgsp1_rep	mRNA	26093652	26097724	.	+	.	ID=Os12t0615300-01;Name=Os12t0615300-01;Locus_id=Os12g0615300;CGSNL Gene Symbol=WAK129;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 129;Oryzabase Gene Symbol Synonym(s)=OsWAK129%2C OsRLCK375%2C RLCK375;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 375;Note=Similar to Protein kinase domain containing protein%2C expressed.;Transcript_evidence=AK119448 (DDBJ%2C Best hit);ORF_evidence=Q2QM75 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: calcium ion binding (GO:0005509),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),EGF-like calcium-binding (IPR001881),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),EGF-like calcium-binding%2C conserved site (IPR018097),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-133-D05;Oryzabase=8044;TENOR=Os12t0615300-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	26093652	26093875	.	+	.	Parent=Os12t0615300-01
Chr12	irgsp1_rep	five_prime_UTR	26093978	26094110	.	+	.	Parent=Os12t0615300-01
Chr12	irgsp1_rep	five_prime_UTR	26094225	26094273	.	+	.	Parent=Os12t0615300-01
Chr12	irgsp1_rep	CDS	26094274	26094283	.	+	0	Parent=Os12t0615300-01
Chr12	irgsp1_rep	CDS	26094610	26095476	.	+	2	Parent=Os12t0615300-01
Chr12	irgsp1_rep	CDS	26095979	26096161	.	+	2	Parent=Os12t0615300-01
Chr12	irgsp1_rep	CDS	26096368	26097548	.	+	2	Parent=Os12t0615300-01
Chr12	irgsp1_rep	three_prime_UTR	26097549	26097724	.	+	.	Parent=Os12t0615300-01
Chr12	irgsp1_rep	mRNA	26095808	26096538	.	+	.	ID=Os12t0615300-02;Name=Os12t0615300-02;Locus_id=Os12g0615300;CGSNL Gene Symbol=WAK129;CGSNL Gene Name=WALL-ASSOCIATED KINASE GENE 129;Oryzabase Gene Symbol Synonym(s)=OsWAK129%2C OsRLCK375%2C RLCK375;Oryzabase Gene Name Synonym(s)=Receptor-like Cytoplasmic Kinase 375;Note=Hypothetical conserved gene.;Transcript_evidence=AK062773 (DDBJ%2C Best hit);ORF_evidence=Q2QM75 (UniProt);GO=Molecular Function: calcium ion binding (GO:0005509);InterPro=EGF-like calcium-binding (IPR001881),EGF-like calcium-binding%2C conserved site (IPR018097);NIAS_FLcDNA=001-107-A05;Oryzabase=8044;TENOR=Os12t0615300-02
Chr12	irgsp1_rep	five_prime_UTR	26095808	26095944	.	+	.	Parent=Os12t0615300-02
Chr12	irgsp1_rep	CDS	26095945	26096161	.	+	0	Parent=Os12t0615300-02
Chr12	irgsp1_rep	CDS	26096368	26096538	.	+	2	Parent=Os12t0615300-02
Chr12	irgsp1_rep	mRNA	26101180	26103543	.	-	.	ID=Os12t0615400-01;Name=Os12t0615400-01;Locus_id=Os12g0615400;Oryzabase Gene Name Synonym(s)=PCR clone D%2C 37 kDa chloroplast inner envelope membrane protein;Note=Similar to 37 kDa inner envelope membrane protein%2C chloroplast precursor (E37).;Transcript_evidence=AK103998 (DDBJ%2C Best hit),AK072988 (DDBJ%2C Best hit),AK104295 (DDBJ%2C Best hit),AK105795 (DDBJ%2C Best hit);ORF_evidence=B6TYV2 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: methyltransferase activity (GO:0008168);InterPro=Methyltransferase type 11 (IPR013216);NIAS_FLcDNA=001-019-C05,J023150A08,001-008-F10,001-203-A02;Oryzabase=17954;TENOR=Os12t0615400-01
Chr12	irgsp1_rep	five_prime_UTR	26103449	26103543	.	-	.	Parent=Os12t0615400-01
Chr12	irgsp1_rep	CDS	26102865	26103448	.	-	0	Parent=Os12t0615400-01
Chr12	irgsp1_rep	CDS	26102345	26102651	.	-	1	Parent=Os12t0615400-01
Chr12	irgsp1_rep	CDS	26101404	26101559	.	-	0	Parent=Os12t0615400-01
Chr12	irgsp1_rep	three_prime_UTR	26101180	26101403	.	-	.	Parent=Os12t0615400-01
Chr12	irgsp1_rep	mRNA	26104095	26115794	.	-	.	ID=Os12t0615500-01;Name=Os12t0615500-01;Locus_id=Os12g0615500;Note=Similar to Hydrolase-like protein.;Transcript_evidence=AK100235 (DDBJ%2C Best hit);ORF_evidence=B4FSG2 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Beta-lactamase-like (IPR001279);NIAS_FLcDNA=J023052A05;Expression=AK100235;TENOR=Os12t0615500-01;KEGG=Os12t0615500-01
Chr12	irgsp1_rep	five_prime_UTR	26115709	26115794	.	-	.	Parent=Os12t0615500-01
Chr12	irgsp1_rep	CDS	26115485	26115708	.	-	0	Parent=Os12t0615500-01
Chr12	irgsp1_rep	CDS	26113779	26113914	.	-	1	Parent=Os12t0615500-01
Chr12	irgsp1_rep	CDS	26113500	26113627	.	-	0	Parent=Os12t0615500-01
Chr12	irgsp1_rep	CDS	26112620	26112767	.	-	1	Parent=Os12t0615500-01
Chr12	irgsp1_rep	CDS	26112440	26112545	.	-	0	Parent=Os12t0615500-01
Chr12	irgsp1_rep	CDS	26111962	26112074	.	-	2	Parent=Os12t0615500-01
Chr12	irgsp1_rep	three_prime_UTR	26111906	26111961	.	-	.	Parent=Os12t0615500-01
Chr12	irgsp1_rep	three_prime_UTR	26111681	26111739	.	-	.	Parent=Os12t0615500-01
Chr12	irgsp1_rep	three_prime_UTR	26111340	26111375	.	-	.	Parent=Os12t0615500-01
Chr12	irgsp1_rep	three_prime_UTR	26111132	26111241	.	-	.	Parent=Os12t0615500-01
Chr12	irgsp1_rep	three_prime_UTR	26110864	26110932	.	-	.	Parent=Os12t0615500-01
Chr12	irgsp1_rep	three_prime_UTR	26107212	26107347	.	-	.	Parent=Os12t0615500-01
Chr12	irgsp1_rep	three_prime_UTR	26106932	26107059	.	-	.	Parent=Os12t0615500-01
Chr12	irgsp1_rep	three_prime_UTR	26106287	26106434	.	-	.	Parent=Os12t0615500-01
Chr12	irgsp1_rep	three_prime_UTR	26106101	26106206	.	-	.	Parent=Os12t0615500-01
Chr12	irgsp1_rep	three_prime_UTR	26105473	26105531	.	-	.	Parent=Os12t0615500-01
Chr12	irgsp1_rep	three_prime_UTR	26105172	26105207	.	-	.	Parent=Os12t0615500-01
Chr12	irgsp1_rep	three_prime_UTR	26104960	26105069	.	-	.	Parent=Os12t0615500-01
Chr12	irgsp1_rep	three_prime_UTR	26104728	26104796	.	-	.	Parent=Os12t0615500-01
Chr12	irgsp1_rep	three_prime_UTR	26104095	26104471	.	-	.	Parent=Os12t0615500-01
Chr12	irgsp1_rep	mRNA	26117640	26120104	.	+	.	ID=Os12t0615600-00;Name=Os12t0615600-00;Locus_id=Os12g0615600;Note=Hypothetical conserved gene.;Transcript_evidence=EU950621 (DDBJ);ORF_evidence=Q2QM66 (UniProt);InterPro=Pentatricopeptide repeat (IPR002885);TENOR=Os12t0615600-00;KEGG=Os12t0615600-00
Chr12	irgsp1_rep	CDS	26117640	26120045	.	+	0	Parent=Os12t0615600-00
Chr12	irgsp1_rep	three_prime_UTR	26120046	26120104	.	+	.	Parent=Os12t0615600-00
Chr12	irgsp1_rep	mRNA	26120373	26122888	.	+	.	ID=Os12t0615700-01;Name=Os12t0615700-01;Locus_id=Os12g0615700;Note=Similar to TRANSPARENT TESTA 12 protein.;Transcript_evidence=AK058512 (DDBJ%2C Best hit);ORF_evidence=E3SHE0 (UniProt);GO=Biological Process: drug transmembrane transport (GO:0006855),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: drug transmembrane transporter activity (GO:0015238),Molecular Function: antiporter activity (GO:0015297);InterPro=Multi antimicrobial extrusion protein (IPR002528);NIAS_FLcDNA=001-016-G09;Expression=AK058512;TENOR=Os12t0615700-01;KEGG=Os12t0615700-01
Chr12	irgsp1_rep	five_prime_UTR	26120373	26120467	.	+	.	Parent=Os12t0615700-01
Chr12	irgsp1_rep	CDS	26120468	26120758	.	+	0	Parent=Os12t0615700-01
Chr12	irgsp1_rep	CDS	26120844	26121388	.	+	0	Parent=Os12t0615700-01
Chr12	irgsp1_rep	CDS	26121467	26121553	.	+	1	Parent=Os12t0615700-01
Chr12	irgsp1_rep	CDS	26121681	26121737	.	+	1	Parent=Os12t0615700-01
Chr12	irgsp1_rep	CDS	26121813	26122051	.	+	1	Parent=Os12t0615700-01
Chr12	irgsp1_rep	CDS	26122159	26122277	.	+	2	Parent=Os12t0615700-01
Chr12	irgsp1_rep	CDS	26122389	26122475	.	+	0	Parent=Os12t0615700-01
Chr12	irgsp1_rep	CDS	26122561	26122638	.	+	0	Parent=Os12t0615700-01
Chr12	irgsp1_rep	three_prime_UTR	26122639	26122888	.	+	.	Parent=Os12t0615700-01
Chr12	irgsp1_rep	mRNA	26124065	26126841	.	-	.	ID=Os12t0615800-01;Name=Os12t0615800-01;Locus_id=Os12g0615800;Note=D111/G-patch domain containing protein.;Transcript_evidence=AK073946 (DDBJ%2C Best hit);ORF_evidence=A3CJG3 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: intracellular (GO:0005622),Cellular Component: nucleus (GO:0005634),Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: DNA binding (GO:0003677);InterPro=D111/G-patch (IPR000467),Tuftelin interacting protein N-terminal (IPR022159),GC-rich sequence DNA-binding factor domain (IPR022783);NIAS_FLcDNA=J033071N19;Expression=AK073946;TENOR=Os12t0615800-01;KEGG=Os12t0615800-01
Chr12	irgsp1_rep	five_prime_UTR	26126775	26126841	.	-	.	Parent=Os12t0615800-01
Chr12	irgsp1_rep	CDS	26124240	26126774	.	-	0	Parent=Os12t0615800-01
Chr12	irgsp1_rep	three_prime_UTR	26124065	26124239	.	-	.	Parent=Os12t0615800-01
Chr12	irgsp1_rep	mRNA	26128861	26130743	.	+	.	ID=Os12t0615900-01;Name=Os12t0615900-01;Locus_id=Os12g0615900;Oryzabase Gene Symbol Synonym(s)=OsWD40-200;Note=WD40/YVTN repeat-like domain containing protein.;Transcript_evidence=AK107784 (DDBJ%2C Best hit);ORF_evidence=B6TGY8 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=WD40 repeat (IPR001680),WD40 repeat-like-containing domain (IPR011046),WD40/YVTN repeat-like-containing domain (IPR015943),WD40-repeat-containing domain (IPR017986),WD40 repeat%2C conserved site (IPR019775),WD40 repeat%2C subgroup (IPR019781),WD40 repeat 2 (IPR019782);NIAS_FLcDNA=002-133-C10;Oryzabase=10881;Expression=AK107784;TENOR=Os12t0615900-01;KEGG=Os12t0615900-01
Chr12	irgsp1_rep	five_prime_UTR	26128861	26128862	.	+	.	Parent=Os12t0615900-01
Chr12	irgsp1_rep	CDS	26128863	26129321	.	+	0	Parent=Os12t0615900-01
Chr12	irgsp1_rep	CDS	26129707	26129998	.	+	0	Parent=Os12t0615900-01
Chr12	irgsp1_rep	CDS	26130488	26130489	.	+	2	Parent=Os12t0615900-01
Chr12	irgsp1_rep	three_prime_UTR	26130490	26130743	.	+	.	Parent=Os12t0615900-01
Chr12	irgsp1_rep	mRNA	26131005	26133878	.	-	.	ID=Os12t0616000-01;Name=Os12t0616000-01;Locus_id=Os12g0616000;Note=Similar to Kinesin-like protein KIFC3.;Transcript_evidence=AK106725 (DDBJ%2C Best hit);ORF_evidence=NP_177370.1 (RefSeq);GO=Biological Process: microtubule-based movement (GO:0007018),Molecular Function: microtubule motor activity (GO:0003777),Molecular Function: ATP binding (GO:0005524);InterPro=Kinesin%2C motor domain (IPR001752),Kinesin%2C motor region%2C conserved site (IPR019821);NIAS_FLcDNA=002-114-H01;Expression=AK106725;TENOR=Os12t0616000-01;KEGG=Os12t0616000-01
Chr12	irgsp1_rep	five_prime_UTR	26133877	26133878	.	-	.	Parent=Os12t0616000-01
Chr12	irgsp1_rep	CDS	26133656	26133876	.	-	0	Parent=Os12t0616000-01
Chr12	irgsp1_rep	CDS	26133428	26133589	.	-	1	Parent=Os12t0616000-01
Chr12	irgsp1_rep	CDS	26133114	26133329	.	-	1	Parent=Os12t0616000-01
Chr12	irgsp1_rep	CDS	26132983	26133020	.	-	1	Parent=Os12t0616000-01
Chr12	irgsp1_rep	CDS	26132738	26132901	.	-	2	Parent=Os12t0616000-01
Chr12	irgsp1_rep	CDS	26132521	26132646	.	-	0	Parent=Os12t0616000-01
Chr12	irgsp1_rep	CDS	26131518	26132333	.	-	0	Parent=Os12t0616000-01
Chr12	irgsp1_rep	three_prime_UTR	26131005	26131517	.	-	.	Parent=Os12t0616000-01
Chr12	irgsp1_rep	mRNA	26138332	26138815	.	+	.	ID=Os12t0616150-00;Name=Os12t0616150-00;Locus_id=Os12g0616150;Note=Hypothetical gene.;Transcript_evidence=BT064780 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0616150-00
Chr12	irgsp1_rep	CDS	26138332	26138469	.	+	0	Parent=Os12t0616150-00
Chr12	irgsp1_rep	CDS	26138530	26138815	.	+	0	Parent=Os12t0616150-00
Chr12	irgsp1_rep	mRNA	26139488	26141761	.	-	.	ID=Os12t0616200-01;Name=Os12t0616200-01;Locus_id=Os12g0616200;Oryzabase Gene Symbol Synonym(s)=HLL;Oryzabase Gene Name Synonym(s)=HUELLENLOS%2C HUELLENLOS-like protein;Note=HUELLENLOS-like protein.;Transcript_evidence=AK059735 (DDBJ%2C Best hit),AK098937 (DDBJ%2C Best hit),AK104805 (DDBJ%2C Best hit);ORF_evidence=Q8W1X6 (UniProt);GO=Biological Process: translation (GO:0006412),Cellular Component: ribosome (GO:0005840),Cellular Component: large ribosomal subunit (GO:0015934),Molecular Function: structural constituent of ribosome (GO:0003735);InterPro=Ribosomal protein L14b/L23e (IPR000218),Ribosomal protein L14%2C bacterial-type (IPR005745),Ribosomal protein L14 conserved site (IPR019972),Ribosomal protein L14 domain (IPR023571);NIAS_FLcDNA=006-202-B02,J013036H15,001-040-D12;Oryzabase=13873;TENOR=Os12t0616200-01
Chr12	irgsp1_rep	five_prime_UTR	26141604	26141761	.	-	.	Parent=Os12t0616200-01
Chr12	irgsp1_rep	five_prime_UTR	26141290	26141321	.	-	.	Parent=Os12t0616200-01
Chr12	irgsp1_rep	CDS	26141256	26141289	.	-	0	Parent=Os12t0616200-01
Chr12	irgsp1_rep	CDS	26140685	26140788	.	-	2	Parent=Os12t0616200-01
Chr12	irgsp1_rep	CDS	26139795	26140169	.	-	0	Parent=Os12t0616200-01
Chr12	irgsp1_rep	three_prime_UTR	26139488	26139794	.	-	.	Parent=Os12t0616200-01
Chr12	irgsp1_rep	mRNA	26155007	26158687	.	+	.	ID=Os12t0616400-01;Name=Os12t0616400-01;Locus_id=Os12g0616400;CGSNL Gene Symbol=PCF8;CGSNL Gene Name=PROLIFERATING CELL FACTOR 8;Oryzabase Gene Symbol Synonym(s)=OsPCF8;Note=Similar to Isoform 2 of Transcription factor PCF8.;Transcript_evidence=AK106830 (DDBJ%2C Best hit);ORF_evidence=Q2QM59-2 (UniProt);NIAS_FLcDNA=002-116-F07;Oryzabase=11695;TENOR=Os12t0616400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	26155007	26155193	.	+	.	Parent=Os12t0616400-01
Chr12	irgsp1_rep	five_prime_UTR	26156050	26156094	.	+	.	Parent=Os12t0616400-01
Chr12	irgsp1_rep	CDS	26156095	26156143	.	+	0	Parent=Os12t0616400-01
Chr12	irgsp1_rep	CDS	26156411	26156988	.	+	2	Parent=Os12t0616400-01
Chr12	irgsp1_rep	three_prime_UTR	26156989	26156992	.	+	.	Parent=Os12t0616400-01
Chr12	irgsp1_rep	three_prime_UTR	26158419	26158687	.	+	.	Parent=Os12t0616400-01
Chr12	irgsp1_rep	mRNA	26155083	26158736	.	+	.	ID=Os12t0616400-02;Name=Os12t0616400-02;Locus_id=Os12g0616400;RAP-DB Gene Symbol Synonym(s)=OsPCF8%2C PCF8;RAP-DB Gene Name Synonym(s)=PROLIFERATING CELL FACTOR 8;CGSNL Gene Symbol=PCF8;CGSNL Gene Name=PROLIFERATING CELL FACTOR 8;Oryzabase Gene Symbol Synonym(s)=OsPCF8;Note=Plant-specific transcription factor%2C miR319 target gene;Transcript_evidence=AB071808;ORF_evidence=Q2QM59;InterPro=Transcription factor%2C TCP (IPR005333),Transcription factor TCP subgroup (IPR017887);Manual Curation=January 5%2C 2018;Literature_PMID=23651319,12000681;Oryzabase=11695
Chr12	irgsp1_rep	five_prime_UTR	26155083	26155193	.	+	.	Parent=Os12t0616400-02
Chr12	irgsp1_rep	five_prime_UTR	26156050	26156094	.	+	.	Parent=Os12t0616400-02
Chr12	irgsp1_rep	CDS	26156095	26156988	.	+	0	Parent=Os12t0616400-02
Chr12	irgsp1_rep	three_prime_UTR	26156989	26156992	.	+	.	Parent=Os12t0616400-02
Chr12	irgsp1_rep	three_prime_UTR	26158419	26158736	.	+	.	Parent=Os12t0616400-02
Chr12	irgsp1_rep	mRNA	26177081	26179003	.	+	.	ID=Os12t0616500-00;Name=Os12t0616500-00;Locus_id=Os12g0616500;CGSNL Gene Symbol=CHX15;CGSNL Gene Name=CATION/H+ EXCHANGER  15;Oryzabase Gene Symbol Synonym(s)=OsCHX15;Oryzabase Gene Name Synonym(s)=Cation proton exchanger%2C cation/H+ exchanger  15;Note=Similar to cation proton exchanger.;Transcript_evidence=ab initio prediction;ORF_evidence=XP_002314350.1 (RefSeq);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: solute:hydrogen antiporter activity (GO:0015299);InterPro=Cation/H+ exchanger (IPR006153);Oryzabase=21956;TENOR=Os12t0616500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	26177081	26179003	.	+	0	Parent=Os12t0616500-00
Chr12	irgsp1_rep	mRNA	26180130	26184989	.	+	.	ID=Os12t0616600-01;Name=Os12t0616600-01;Locus_id=Os12g0616600;Oryzabase Gene Symbol Synonym(s)=OsDegp15%2C DEGP15%2C OsDeg5;Oryzabase Gene Name Synonym(s)=Deg protease 15%2C DEG PROTEASE 15;Note=Similar to protease Do-like 5.;Transcript_evidence=AK067918 (DDBJ%2C Best hit);ORF_evidence=NP_001149027.1 (RefSeq);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Peptidase cysteine/serine%2C trypsin-like (IPR009003);NIAS_FLcDNA=J013122D07;Oryzabase=20091;TENOR=Os12t0616600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	26180130	26180162	.	+	.	Parent=Os12t0616600-01
Chr12	irgsp1_rep	CDS	26180163	26180399	.	+	0	Parent=Os12t0616600-01
Chr12	irgsp1_rep	CDS	26180483	26180641	.	+	0	Parent=Os12t0616600-01
Chr12	irgsp1_rep	CDS	26181084	26181146	.	+	0	Parent=Os12t0616600-01
Chr12	irgsp1_rep	CDS	26181245	26181256	.	+	0	Parent=Os12t0616600-01
Chr12	irgsp1_rep	three_prime_UTR	26181257	26181346	.	+	.	Parent=Os12t0616600-01
Chr12	irgsp1_rep	three_prime_UTR	26181428	26181550	.	+	.	Parent=Os12t0616600-01
Chr12	irgsp1_rep	three_prime_UTR	26181788	26181875	.	+	.	Parent=Os12t0616600-01
Chr12	irgsp1_rep	three_prime_UTR	26183487	26183561	.	+	.	Parent=Os12t0616600-01
Chr12	irgsp1_rep	three_prime_UTR	26184553	26184989	.	+	.	Parent=Os12t0616600-01
Chr12	irgsp1_rep	mRNA	26194568	26195981	.	-	.	ID=Os12t0616800-01;Name=Os12t0616800-01;Locus_id=Os12g0616800;Note=Protein of unknown function DUF761%2C plant domain containing protein.;Transcript_evidence=AK070105 (DDBJ%2C Best hit);ORF_evidence=A3CJH0 (UniProt);InterPro=Protein of unknown function DUF761%2C plant (IPR008480);NIAS_FLcDNA=J023043J24;Expression=AK070105;TENOR=Os12t0616800-01;KEGG=Os12t0616800-01
Chr12	irgsp1_rep	five_prime_UTR	26195866	26195981	.	-	.	Parent=Os12t0616800-01
Chr12	irgsp1_rep	CDS	26195062	26195865	.	-	0	Parent=Os12t0616800-01
Chr12	irgsp1_rep	three_prime_UTR	26194568	26195061	.	-	.	Parent=Os12t0616800-01
Chr12	irgsp1_rep	mRNA	26200242	26203412	.	+	.	ID=Os12t0616900-01;Name=Os12t0616900-01;Locus_id=Os12g0616900;Note=Similar to Pyruvate dehydrogenase E1 beta subunit (Fragment).;Transcript_evidence=AK063753 (DDBJ%2C Best hit),AK101464 (DDBJ%2C Best hit);ORF_evidence=NP_001150473.1 (RefSeq);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: catalytic activity (GO:0003824);InterPro=Transketolase-like%2C pyrimidine-binding domain (IPR005475),Transketolase%2C C-terminal (IPR005476),Transketolase%2C C-terminal/Pyruvate-ferredoxin oxidoreductase%2C domain II (IPR009014),Transketolase-like%2C C-terminal (IPR015941);NIAS_FLcDNA=001-121-A03,J033040H13;TENOR=Os12t0616900-01
Chr12	irgsp1_rep	five_prime_UTR	26200242	26200324	.	+	.	Parent=Os12t0616900-01
Chr12	irgsp1_rep	CDS	26200325	26200489	.	+	0	Parent=Os12t0616900-01
Chr12	irgsp1_rep	CDS	26200582	26200619	.	+	0	Parent=Os12t0616900-01
Chr12	irgsp1_rep	CDS	26202284	26203256	.	+	1	Parent=Os12t0616900-01
Chr12	irgsp1_rep	three_prime_UTR	26203257	26203412	.	+	.	Parent=Os12t0616900-01
Chr12	irgsp1_rep	mRNA	26210779	26211896	.	-	.	ID=Os12t0617000-01;Name=Os12t0617000-01;Locus_id=Os12g0617000;RAP-DB Gene Symbol Synonym(s)=PINE1%2C DEC1;RAP-DB Gene Name Synonym(s)=PREMATURE INTERNODE ELONGATION 1%2C DECELERATOR OF INTERNODE ELONGATION 1;CGSNL Gene Symbol=PINE1;CGSNL Gene Name=PREMATURE INTERNODE ELONGATION 1;Oryzabase Gene Symbol Synonym(s)=OsPINE1%2C DLN266%2C OsDLN266;Oryzabase Gene Name Synonym(s)=DLN repressor 266%2C DLN motif protein 266;Note=Zinc-finger transcription factor%2C Coordination of internode elongation and photoperiodic signal%2C Suppression of internode elongation;Transcript_evidence=Inferred from literature;ORF_evidence=Q2QM53;GO=Molecular Function: nucleic acid binding (GO:0003676);InterPro=Zinc finger C2H2 superfamily (IPR036236),Zinc finger C2H2-type (IPR013087);Manual Curation=July 17%2C 2020;Literature_PMID=32669710,30888525;Oryzabase=23139;TENOR=Os12t0617000-00;Subcellular location=nucleus (GO:0005634)
Chr12	irgsp1_rep	five_prime_UTR	26211744	26211896	.	-	.	Parent=Os12t0617000-01
Chr12	irgsp1_rep	CDS	26211111	26211743	.	-	0	Parent=Os12t0617000-01
Chr12	irgsp1_rep	three_prime_UTR	26210779	26211110	.	-	.	Parent=Os12t0617000-01
Chr12	irgsp1_rep	mRNA	26215882	26221809	.	-	.	ID=Os12t0617100-01;Name=Os12t0617100-01;Locus_id=Os12g0617100;Note=Similar to Translation initiation factor eIF-2B delta subunit (eIF-2B GDP-GTP exchange factor) (Guanine nucleotide exchange factor subunit GCD2) (GCD complex subunit GCD2).;Transcript_evidence=AK103148 (DDBJ%2C Best hit);ORF_evidence=NP_001159071.1 (RefSeq);GO=Biological Process: cellular metabolic process (GO:0044237);InterPro=Initiation factor 2B-related (IPR000649);NIAS_FLcDNA=J033120L07;Expression=AK103148;TENOR=Os12t0617100-01;KEGG=Os12t0617100-01
Chr12	irgsp1_rep	five_prime_UTR	26221721	26221809	.	-	.	Parent=Os12t0617100-01
Chr12	irgsp1_rep	CDS	26221369	26221720	.	-	0	Parent=Os12t0617100-01
Chr12	irgsp1_rep	CDS	26220375	26220518	.	-	2	Parent=Os12t0617100-01
Chr12	irgsp1_rep	CDS	26219798	26220165	.	-	2	Parent=Os12t0617100-01
Chr12	irgsp1_rep	CDS	26218748	26219492	.	-	0	Parent=Os12t0617100-01
Chr12	irgsp1_rep	CDS	26218572	26218668	.	-	2	Parent=Os12t0617100-01
Chr12	irgsp1_rep	CDS	26218432	26218486	.	-	1	Parent=Os12t0617100-01
Chr12	irgsp1_rep	CDS	26216744	26216806	.	-	0	Parent=Os12t0617100-01
Chr12	irgsp1_rep	three_prime_UTR	26216693	26216743	.	-	.	Parent=Os12t0617100-01
Chr12	irgsp1_rep	three_prime_UTR	26215882	26216126	.	-	.	Parent=Os12t0617100-01
Chr12	irgsp1_rep	mRNA	26216743	26221739	.	+	.	ID=Os12t0617175-00;Name=Os12t0617175-00;Locus_id=Os12g0617175;Note=Non-protein coding transcript.;Transcript_evidence=tplb0051c11 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os12t0617175-00
Chr12	irgsp1_rep	exon	26216743	26216877	.	+	.	Parent=Os12t0617175-00
Chr12	irgsp1_rep	exon	26218586	26218680	.	+	.	Parent=Os12t0617175-00
Chr12	irgsp1_rep	exon	26218760	26219499	.	+	.	Parent=Os12t0617175-00
Chr12	irgsp1_rep	exon	26219805	26220163	.	+	.	Parent=Os12t0617175-00
Chr12	irgsp1_rep	exon	26220373	26220521	.	+	.	Parent=Os12t0617175-00
Chr12	irgsp1_rep	exon	26221391	26221739	.	+	.	Parent=Os12t0617175-00
Chr12	irgsp1_rep	mRNA	26268681	26270167	.	-	.	ID=Os12t0617250-00;Name=Os12t0617250-00;Locus_id=Os12g0617250;Note=Hypothetical gene.;Transcript_evidence=BT085311 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0617250-00;KEGG=Os12t0617250-00
Chr12	irgsp1_rep	five_prime_UTR	26270167	26270167	.	-	.	Parent=Os12t0617250-00
Chr12	irgsp1_rep	CDS	26269825	26270166	.	-	0	Parent=Os12t0617250-00
Chr12	irgsp1_rep	CDS	26269345	26269683	.	-	0	Parent=Os12t0617250-00
Chr12	irgsp1_rep	three_prime_UTR	26268681	26269344	.	-	.	Parent=Os12t0617250-00
Chr12	irgsp1_rep	mRNA	26268230	26270792	.	+	.	ID=Os12t0617400-01;Name=Os12t0617400-01;Locus_id=Os12g0617400;RAP-DB Gene Symbol Synonym(s)=OsNCED5;RAP-DB Gene Name Synonym(s)=9-cis-epoxycarotenoid dioxygenase 5;CGSNL Gene Symbol=NCED2;CGSNL Gene Name=9-CIS-EPOXYCAROTENOID DIOXYGENASE 2;Oryzabase Gene Symbol Synonym(s)=OSNCED2%2C OsNCED2%2C OsNCED5%2C NCED5;Oryzabase Gene Name Synonym(s)=9-cis-epoxycarotenoid dioxygenase 2;Note=9-cis-epoxycarotenoid dioxygenase%2C Control of ABA biosynthesis%2C Regulation of salt and water stress tolerance and leaf senescence;Transcript_evidence=AK107649 (truncated),AY838901,Inferred from literature;ORF_evidence=Q5MBR3;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on single donors with incorporation of molecular oxygen%2C incorporation of two atoms of oxygen (GO:0016702);InterPro=Carotenoid oxygenase (IPR004294);NIAS_FLcDNA=002-131-F10 (truncated);Manual Curation=February 17%2C 2020;Literature_PMID=31481229;Oryzabase=7300;Expression=AK107649;TENOR=Os12t0617400-01;KEGG=Os12t0617400-01 (EC:1.13.11.51);B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	26268230	26268327	.	+	.	Parent=Os12t0617400-01
Chr12	irgsp1_rep	CDS	26268328	26270169	.	+	0	Parent=Os12t0617400-01
Chr12	irgsp1_rep	three_prime_UTR	26270170	26270792	.	+	.	Parent=Os12t0617400-01
Chr12	irgsp1_rep	mRNA	26300176	26306140	.	-	.	ID=Os12t0617800-01;Name=Os12t0617800-01;Locus_id=Os12g0617800;Note=Cation/H+ exchanger domain containing protein.;Transcript_evidence=AK068845 (DDBJ%2C Best hit);ORF_evidence=Q9M0Z3 (UniProt);GO=Biological Process: cation transport (GO:0006812),Biological Process: potassium ion transport (GO:0006813),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: solute:hydrogen antiporter activity (GO:0015299);InterPro=Regulator of K+ conductance%2C N-terminal (IPR003148),Cation/H+ exchanger (IPR006153),NAD(P)-binding domain (IPR016040);NIAS_FLcDNA=J013166D16;Expression=AK068845;TENOR=Os12t0617800-01;KEGG=Os12t0617800-01
Chr12	irgsp1_rep	five_prime_UTR	26306021	26306140	.	-	.	Parent=Os12t0617800-01
Chr12	irgsp1_rep	CDS	26305661	26306020	.	-	0	Parent=Os12t0617800-01
Chr12	irgsp1_rep	CDS	26305452	26305553	.	-	0	Parent=Os12t0617800-01
Chr12	irgsp1_rep	CDS	26305229	26305309	.	-	0	Parent=Os12t0617800-01
Chr12	irgsp1_rep	CDS	26304801	26304902	.	-	0	Parent=Os12t0617800-01
Chr12	irgsp1_rep	CDS	26304416	26304493	.	-	0	Parent=Os12t0617800-01
Chr12	irgsp1_rep	CDS	26304027	26304095	.	-	0	Parent=Os12t0617800-01
Chr12	irgsp1_rep	CDS	26303856	26303906	.	-	0	Parent=Os12t0617800-01
Chr12	irgsp1_rep	CDS	26303240	26303353	.	-	0	Parent=Os12t0617800-01
Chr12	irgsp1_rep	CDS	26303056	26303157	.	-	0	Parent=Os12t0617800-01
Chr12	irgsp1_rep	CDS	26302831	26302965	.	-	0	Parent=Os12t0617800-01
Chr12	irgsp1_rep	CDS	26302383	26302564	.	-	0	Parent=Os12t0617800-01
Chr12	irgsp1_rep	CDS	26302160	26302295	.	-	1	Parent=Os12t0617800-01
Chr12	irgsp1_rep	CDS	26302006	26302077	.	-	0	Parent=Os12t0617800-01
Chr12	irgsp1_rep	CDS	26301774	26301875	.	-	0	Parent=Os12t0617800-01
Chr12	irgsp1_rep	CDS	26301519	26301680	.	-	0	Parent=Os12t0617800-01
Chr12	irgsp1_rep	CDS	26301293	26301382	.	-	0	Parent=Os12t0617800-01
Chr12	irgsp1_rep	CDS	26301044	26301205	.	-	0	Parent=Os12t0617800-01
Chr12	irgsp1_rep	CDS	26300669	26300944	.	-	0	Parent=Os12t0617800-01
Chr12	irgsp1_rep	three_prime_UTR	26300176	26300668	.	-	.	Parent=Os12t0617800-01
Chr12	irgsp1_rep	mRNA	26307596	26315803	.	-	.	ID=Os12t0617900-01;Name=Os12t0617900-01;Locus_id=Os12g0617900;Oryzabase Gene Symbol Synonym(s)=OsPPKL3%2C OsPP132;Oryzabase Gene Name Synonym(s)=protein phosphatase with Kelch-like repeat domain 3%2C Protein phosphatase 132;Note=Similar to Serine/threonine protein phosphatase.;Transcript_evidence=AK066418 (DDBJ%2C Best hit);ORF_evidence=B8BN16 (UniProt);GO=Molecular Function: phosphoprotein phosphatase activity (GO:0004721),Molecular Function: iron ion binding (GO:0005506),Molecular Function: protein binding (GO:0005515),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: manganese ion binding (GO:0030145);InterPro=Metallophosphoesterase domain (IPR004843),Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (IPR006186),Kelch repeat type 2 (IPR011498),Serine/threonine protein phosphatase%2C BSU1 (IPR012391),Kelch-type beta propeller (IPR015915);NIAS_FLcDNA=J013067H19;Oryzabase=11679;TENOR=Os12t0617900-01
Chr12	irgsp1_rep	five_prime_UTR	26315454	26315803	.	-	.	Parent=Os12t0617900-01
Chr12	irgsp1_rep	CDS	26315024	26315453	.	-	0	Parent=Os12t0617900-01
Chr12	irgsp1_rep	CDS	26314035	26314095	.	-	2	Parent=Os12t0617900-01
Chr12	irgsp1_rep	CDS	26313786	26313864	.	-	1	Parent=Os12t0617900-01
Chr12	irgsp1_rep	CDS	26313625	26313704	.	-	0	Parent=Os12t0617900-01
Chr12	irgsp1_rep	CDS	26313447	26313541	.	-	1	Parent=Os12t0617900-01
Chr12	irgsp1_rep	CDS	26313246	26313345	.	-	2	Parent=Os12t0617900-01
Chr12	irgsp1_rep	CDS	26312653	26312722	.	-	1	Parent=Os12t0617900-01
Chr12	irgsp1_rep	CDS	26311972	26312073	.	-	0	Parent=Os12t0617900-01
Chr12	irgsp1_rep	CDS	26311786	26311867	.	-	0	Parent=Os12t0617900-01
Chr12	irgsp1_rep	CDS	26311199	26311378	.	-	2	Parent=Os12t0617900-01
Chr12	irgsp1_rep	CDS	26310424	26310697	.	-	2	Parent=Os12t0617900-01
Chr12	irgsp1_rep	CDS	26310049	26310292	.	-	1	Parent=Os12t0617900-01
Chr12	irgsp1_rep	CDS	26309677	26309847	.	-	0	Parent=Os12t0617900-01
Chr12	irgsp1_rep	CDS	26309230	26309468	.	-	0	Parent=Os12t0617900-01
Chr12	irgsp1_rep	CDS	26308839	26308923	.	-	1	Parent=Os12t0617900-01
Chr12	irgsp1_rep	CDS	26308643	26308741	.	-	0	Parent=Os12t0617900-01
Chr12	irgsp1_rep	CDS	26308363	26308562	.	-	0	Parent=Os12t0617900-01
Chr12	irgsp1_rep	CDS	26308199	26308274	.	-	1	Parent=Os12t0617900-01
Chr12	irgsp1_rep	CDS	26307972	26308107	.	-	0	Parent=Os12t0617900-01
Chr12	irgsp1_rep	CDS	26307746	26307885	.	-	2	Parent=Os12t0617900-01
Chr12	irgsp1_rep	CDS	26307596	26307648	.	-	0	Parent=Os12t0617900-01
Chr12	irgsp1_rep	mRNA	26306869	26315532	.	-	.	ID=Os12t0617900-02;Name=Os12t0617900-02;Locus_id=Os12g0617900;Oryzabase Gene Symbol Synonym(s)=OsPPKL3%2C OsPP132;Oryzabase Gene Name Synonym(s)=protein phosphatase with Kelch-like repeat domain 3%2C Protein phosphatase 132;Note=Similar to Serine/threonine protein phosphatase BSL2 (EC 3.1.3.16) (BSU1-like protein 2).;Transcript_evidence=AK065064 (DDBJ%2C Best hit);ORF_evidence=B8BN16 (UniProt);GO=Molecular Function: phosphoprotein phosphatase activity (GO:0004721),Molecular Function: iron ion binding (GO:0005506),Molecular Function: protein binding (GO:0005515),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: manganese ion binding (GO:0030145);InterPro=Metallophosphoesterase domain (IPR004843),Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (IPR006186),Kelch repeat type 2 (IPR011498),Serine/threonine protein phosphatase%2C BSU1 (IPR012391),Kelch-type beta propeller (IPR015915);NIAS_FLcDNA=J013001J19;Oryzabase=11679;Expression=AK065064;TENOR=Os12t0617900-02;KEGG=Os12t0617900-02 (EC:3.1.3.16)
Chr12	irgsp1_rep	five_prime_UTR	26315454	26315532	.	-	.	Parent=Os12t0617900-02
Chr12	irgsp1_rep	CDS	26315024	26315453	.	-	0	Parent=Os12t0617900-02
Chr12	irgsp1_rep	CDS	26314035	26314095	.	-	2	Parent=Os12t0617900-02
Chr12	irgsp1_rep	CDS	26313786	26313864	.	-	1	Parent=Os12t0617900-02
Chr12	irgsp1_rep	CDS	26313625	26313704	.	-	0	Parent=Os12t0617900-02
Chr12	irgsp1_rep	CDS	26313447	26313541	.	-	1	Parent=Os12t0617900-02
Chr12	irgsp1_rep	CDS	26313246	26313345	.	-	2	Parent=Os12t0617900-02
Chr12	irgsp1_rep	CDS	26312653	26312722	.	-	1	Parent=Os12t0617900-02
Chr12	irgsp1_rep	CDS	26311972	26312073	.	-	0	Parent=Os12t0617900-02
Chr12	irgsp1_rep	CDS	26311786	26311867	.	-	0	Parent=Os12t0617900-02
Chr12	irgsp1_rep	CDS	26311199	26311378	.	-	2	Parent=Os12t0617900-02
Chr12	irgsp1_rep	CDS	26310424	26310697	.	-	2	Parent=Os12t0617900-02
Chr12	irgsp1_rep	CDS	26310049	26310292	.	-	1	Parent=Os12t0617900-02
Chr12	irgsp1_rep	CDS	26309677	26309847	.	-	0	Parent=Os12t0617900-02
Chr12	irgsp1_rep	CDS	26309230	26309468	.	-	0	Parent=Os12t0617900-02
Chr12	irgsp1_rep	CDS	26308839	26308923	.	-	1	Parent=Os12t0617900-02
Chr12	irgsp1_rep	CDS	26308643	26308741	.	-	0	Parent=Os12t0617900-02
Chr12	irgsp1_rep	CDS	26308363	26308562	.	-	0	Parent=Os12t0617900-02
Chr12	irgsp1_rep	CDS	26308199	26308274	.	-	1	Parent=Os12t0617900-02
Chr12	irgsp1_rep	CDS	26307972	26308107	.	-	0	Parent=Os12t0617900-02
Chr12	irgsp1_rep	CDS	26307746	26307885	.	-	2	Parent=Os12t0617900-02
Chr12	irgsp1_rep	CDS	26307562	26307648	.	-	0	Parent=Os12t0617900-02
Chr12	irgsp1_rep	three_prime_UTR	26306869	26307561	.	-	.	Parent=Os12t0617900-02
Chr12	irgsp1_rep	mRNA	26306929	26308392	.	-	.	ID=Os12t0617900-03;Name=Os12t0617900-03;Locus_id=Os12g0617900;Oryzabase Gene Symbol Synonym(s)=OsPPKL3%2C OsPP132;Oryzabase Gene Name Synonym(s)=protein phosphatase with Kelch-like repeat domain 3%2C Protein phosphatase 132;Note=Similar to Serine/threonine protein phosphatase.;Transcript_evidence=AK062131 (DDBJ%2C Best hit);ORF_evidence=B9FTT3 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (IPR006186);NIAS_FLcDNA=001-045-E05;Oryzabase=11679;Expression=AK062131;TENOR=Os12t0617900-03;KEGG=Os12t0617900-03 (EC:3.1.3.16)
Chr12	irgsp1_rep	five_prime_UTR	26308392	26308392	.	-	.	Parent=Os12t0617900-03
Chr12	irgsp1_rep	CDS	26308363	26308391	.	-	0	Parent=Os12t0617900-03
Chr12	irgsp1_rep	CDS	26308199	26308274	.	-	1	Parent=Os12t0617900-03
Chr12	irgsp1_rep	CDS	26307972	26308107	.	-	0	Parent=Os12t0617900-03
Chr12	irgsp1_rep	CDS	26307746	26307885	.	-	2	Parent=Os12t0617900-03
Chr12	irgsp1_rep	CDS	26307562	26307648	.	-	0	Parent=Os12t0617900-03
Chr12	irgsp1_rep	three_prime_UTR	26306929	26307561	.	-	.	Parent=Os12t0617900-03
Chr12	irgsp1_rep	mRNA	26319872	26322202	.	+	.	ID=Os12t0618000-01;Name=Os12t0618000-01;Locus_id=Os12g0618000;Note=Conserved hypothetical protein.;Transcript_evidence=AK242061 (DDBJ%2C Best hit);ORF_evidence=A2ZMT8 (UniProt);NIAS_FLcDNA=J075126N13;TENOR=Os12t0618000-01;KEGG=Os12t0618000-01
Chr12	irgsp1_rep	five_prime_UTR	26319872	26319944	.	+	.	Parent=Os12t0618000-01
Chr12	irgsp1_rep	CDS	26319945	26320662	.	+	0	Parent=Os12t0618000-01
Chr12	irgsp1_rep	CDS	26321322	26321411	.	+	2	Parent=Os12t0618000-01
Chr12	irgsp1_rep	CDS	26321524	26321999	.	+	2	Parent=Os12t0618000-01
Chr12	irgsp1_rep	three_prime_UTR	26322000	26322202	.	+	.	Parent=Os12t0618000-01
Chr12	irgsp1_rep	mRNA	26334398	26338170	.	-	.	ID=Os12t0618300-01;Name=Os12t0618300-01;Locus_id=Os12g0618300;Note=Similar to GTP-binding protein-like (Fragment).;Transcript_evidence=AK101466 (DDBJ%2C Best hit);ORF_evidence=B6U832 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=GTP-binding domain%2C HSR1-related (IPR002917),GTP1/OBG (IPR006073);NIAS_FLcDNA=J033040I12;Expression=AK101466;TENOR=Os12t0618300-01;KEGG=Os12t0618300-01
Chr12	irgsp1_rep	five_prime_UTR	26338094	26338170	.	-	.	Parent=Os12t0618300-01
Chr12	irgsp1_rep	CDS	26337840	26338093	.	-	0	Parent=Os12t0618300-01
Chr12	irgsp1_rep	CDS	26337623	26337712	.	-	1	Parent=Os12t0618300-01
Chr12	irgsp1_rep	CDS	26337450	26337536	.	-	1	Parent=Os12t0618300-01
Chr12	irgsp1_rep	CDS	26336952	26337045	.	-	1	Parent=Os12t0618300-01
Chr12	irgsp1_rep	CDS	26336589	26336645	.	-	0	Parent=Os12t0618300-01
Chr12	irgsp1_rep	CDS	26336000	26336079	.	-	0	Parent=Os12t0618300-01
Chr12	irgsp1_rep	CDS	26334767	26335901	.	-	1	Parent=Os12t0618300-01
Chr12	irgsp1_rep	three_prime_UTR	26334398	26334766	.	-	.	Parent=Os12t0618300-01
Chr12	irgsp1_rep	mRNA	26334350	26337044	.	-	.	ID=Os12t0618300-02;Name=Os12t0618300-02;Locus_id=Os12g0618300;Note=Similar to GTP binding protein.;Transcript_evidence=AK103368 (DDBJ%2C Best hit);ORF_evidence=B6U832 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=GTP-binding domain%2C HSR1-related (IPR002917),GTP1/OBG (IPR006073);NIAS_FLcDNA=J033126P14;Expression=AK103368;TENOR=Os12t0618300-02;KEGG=Os12t0618300-02
Chr12	irgsp1_rep	CDS	26336952	26337044	.	-	0	Parent=Os12t0618300-02
Chr12	irgsp1_rep	CDS	26336589	26336645	.	-	0	Parent=Os12t0618300-02
Chr12	irgsp1_rep	CDS	26336000	26336079	.	-	0	Parent=Os12t0618300-02
Chr12	irgsp1_rep	CDS	26334767	26335901	.	-	1	Parent=Os12t0618300-02
Chr12	irgsp1_rep	three_prime_UTR	26334350	26334766	.	-	.	Parent=Os12t0618300-02
Chr12	irgsp1_rep	mRNA	26334398	26336079	.	-	.	ID=Os12t0618300-03;Name=Os12t0618300-03;Locus_id=Os12g0618300;Note=Similar to GTP binding protein.;Transcript_evidence=AK060811 (DDBJ%2C Best hit);ORF_evidence=B6U832 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: GTP binding (GO:0005525);InterPro=GTP-binding domain%2C HSR1-related (IPR002917),GTP1/OBG (IPR006073);NIAS_FLcDNA=001-033-H01;Expression=AK060811;TENOR=Os12t0618300-03;KEGG=Os12t0618300-03
Chr12	irgsp1_rep	CDS	26336000	26336079	.	-	0	Parent=Os12t0618300-03
Chr12	irgsp1_rep	CDS	26334767	26335901	.	-	1	Parent=Os12t0618300-03
Chr12	irgsp1_rep	three_prime_UTR	26334398	26334766	.	-	.	Parent=Os12t0618300-03
Chr12	irgsp1_rep	mRNA	26335395	26336072	.	+	.	ID=Os12t0618333-00;Name=Os12t0618333-00;Locus_id=Os12g0618333;Note=Non-protein coding transcript.;Transcript_evidence=AF124739 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0618333-00
Chr12	irgsp1_rep	exon	26335395	26335885	.	+	.	Parent=Os12t0618333-00
Chr12	irgsp1_rep	exon	26335977	26336072	.	+	.	Parent=Os12t0618333-00
Chr12	irgsp1_rep	mRNA	26337444	26338006	.	+	.	ID=Os12t0618366-00;Name=Os12t0618366-00;Locus_id=Os12g0618366;Note=Hypothetical gene.;Transcript_evidence=BT086909 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0618366-00;KEGG=Os12t0618366-00
Chr12	irgsp1_rep	five_prime_UTR	26337444	26337528	.	+	.	Parent=Os12t0618366-00
Chr12	irgsp1_rep	CDS	26337529	26337531	.	+	0	Parent=Os12t0618366-00
Chr12	irgsp1_rep	CDS	26337610	26337703	.	+	0	Parent=Os12t0618366-00
Chr12	irgsp1_rep	CDS	26337831	26338006	.	+	2	Parent=Os12t0618366-00
Chr12	irgsp1_rep	mRNA	26339257	26346047	.	-	.	ID=Os12t0618400-01;Name=Os12t0618400-01;Locus_id=Os12g0618400;CGSNL Gene Symbol=LHR;CGSNL Gene Name=LONG HAIRPIN-STRUCTURE CONTAINING NON-CODING RNA;Oryzabase Gene Symbol Synonym(s)=OsLHR;Oryzabase Gene Name Synonym(s)=Long Hairpin-structure containing non-coding RNA;Note=Conserved hypothetical protein.;Transcript_evidence=AK120922 (DDBJ%2C Best hit);ORF_evidence=A2ZMT4 (UniProt);NIAS_FLcDNA=J023035E19;Oryzabase=16223;Expression=AK120922;TENOR=Os12t0618400-01;KEGG=Os12t0618400-01
Chr12	irgsp1_rep	five_prime_UTR	26345741	26346047	.	-	.	Parent=Os12t0618400-01
Chr12	irgsp1_rep	five_prime_UTR	26344912	26345656	.	-	.	Parent=Os12t0618400-01
Chr12	irgsp1_rep	five_prime_UTR	26344737	26344827	.	-	.	Parent=Os12t0618400-01
Chr12	irgsp1_rep	five_prime_UTR	26344536	26344631	.	-	.	Parent=Os12t0618400-01
Chr12	irgsp1_rep	five_prime_UTR	26341862	26341902	.	-	.	Parent=Os12t0618400-01
Chr12	irgsp1_rep	CDS	26341816	26341861	.	-	0	Parent=Os12t0618400-01
Chr12	irgsp1_rep	CDS	26340709	26340767	.	-	2	Parent=Os12t0618400-01
Chr12	irgsp1_rep	CDS	26339950	26340039	.	-	0	Parent=Os12t0618400-01
Chr12	irgsp1_rep	CDS	26339462	26339833	.	-	0	Parent=Os12t0618400-01
Chr12	irgsp1_rep	three_prime_UTR	26339257	26339461	.	-	.	Parent=Os12t0618400-01
Chr12	irgsp1_rep	mRNA	26345397	26345976	.	-	.	ID=Os12t0618400-02;Name=Os12t0618400-02;Locus_id=Os12g0618400;CGSNL Gene Symbol=LHR;CGSNL Gene Name=LONG HAIRPIN-STRUCTURE CONTAINING NON-CODING RNA;Oryzabase Gene Symbol Synonym(s)=OsLHR;Oryzabase Gene Name Synonym(s)=Long Hairpin-structure containing non-coding RNA;Note=Hypothetical conserved gene.;Transcript_evidence=AK107860 (DDBJ%2C Best hit);ORF_evidence=B9GEB3 (UniProt);NIAS_FLcDNA=002-134-B06;Oryzabase=16223;Expression=AK107860;TENOR=Os12t0618400-02;KEGG=Os12t0618400-02
Chr12	irgsp1_rep	five_prime_UTR	26345848	26345976	.	-	.	Parent=Os12t0618400-02
Chr12	irgsp1_rep	CDS	26345741	26345847	.	-	0	Parent=Os12t0618400-02
Chr12	irgsp1_rep	CDS	26345530	26345656	.	-	1	Parent=Os12t0618400-02
Chr12	irgsp1_rep	three_prime_UTR	26345397	26345529	.	-	.	Parent=Os12t0618400-02
Chr12	irgsp1_rep	mRNA	26346896	26351207	.	-	.	ID=Os12t0618600-01;Name=Os12t0618600-01;Locus_id=Os12g0618600;CGSNL Gene Symbol=HAP2F;CGSNL Gene Name=HAP2 SUBUNIT OF CCAAT-BOX BINDING COMPLEX;Oryzabase Gene Symbol Synonym(s)=OsHAP2F%2C NF-YA%2C CBF-B%2C NF-YA10%2C OsNF-YA10%2C NFYA10;Oryzabase Gene Name Synonym(s)=NUCLEAR FACTOR-Y subunit A10%2C NUCLEAR FACTOR-Y subunit NF-YA10%2C NF-YA transcription factor 10%2C NF-YA subunit 10%2C NF-YA family 10;Note=Similar to Transcriptional activator HAP2.;Transcript_evidence=AK073742 (DDBJ%2C Best hit);ORF_evidence=B6SM21 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700);InterPro=CCAAT-binding transcription factor%2C subunit B (IPR001289);NIAS_FLcDNA=J033067G24;Oryzabase=8478;Expression=AK073742;TENOR=Os12t0618600-01;KEGG=Os12t0618600-01
Chr12	irgsp1_rep	five_prime_UTR	26351183	26351207	.	-	.	Parent=Os12t0618600-01
Chr12	irgsp1_rep	five_prime_UTR	26350441	26350545	.	-	.	Parent=Os12t0618600-01
Chr12	irgsp1_rep	CDS	26350203	26350440	.	-	0	Parent=Os12t0618600-01
Chr12	irgsp1_rep	CDS	26348981	26349081	.	-	2	Parent=Os12t0618600-01
Chr12	irgsp1_rep	CDS	26348789	26348857	.	-	0	Parent=Os12t0618600-01
Chr12	irgsp1_rep	CDS	26348105	26348248	.	-	0	Parent=Os12t0618600-01
Chr12	irgsp1_rep	CDS	26347469	26347852	.	-	0	Parent=Os12t0618600-01
Chr12	irgsp1_rep	three_prime_UTR	26346896	26347468	.	-	.	Parent=Os12t0618600-01
Chr12	irgsp1_rep	mRNA	26363271	26365704	.	-	.	ID=Os12t0618800-01;Name=Os12t0618800-01;Locus_id=Os12g0618800;RAP-DB Gene Symbol Synonym(s)=OsPLS3%2C OsGCNT;RAP-DB Gene Name Synonym(s)=Oryza sativa precocious leaf senescence3%2C Oryza sativa beta-1%2C6-N-acetylglucosaminyl transferase;CGSNL Gene Symbol=PLS3;CGSNL Gene Name=PRECOCIOUS LEAF SENESCENCE 3;Oryzabase Gene Symbol Synonym(s)=OsPLS3%2C SPL21%2C spl21(t)%2C OsSPL21%2C OsGCNT%2C GCNT%2C OsPSL%2C PSL%2C C2GNT1%2C OsC2GNT1;Oryzabase Gene Name Synonym(s)=precocious leaf senescence3%2C beta-1%2C 6-N-acetylglucosaminyl transferase%2C spotted-leaf 21%2C premature senescence leaf%2C core 2/I branching beta-1%2C 6-N- acetylglucosaminyl transferase-1;Note=DUF266-containing protein%2C Beta-1%2C6-N-acetylglucosaminyl transferase%2C Regulation of the onset of leaf senescence%2C Negative-regulator mediating defense response and immunity-associated premature leaf senescence;Transcript_evidence=AK243349;ORF_evidence=Q2QM36;GO=Molecular Function: acetylglucosaminyltransferase activity (GO:0008375),Cellular Component: membrane (GO:0016020);InterPro=Glycosyl transferase%2C family 14 (IPR003406);NIAS_FLcDNA=J100060F06;Manual Curation=November 5%2C 2018;Literature_PMID=30382816,30117035;Oryzabase=22600;TENOR=Os12t0618800-01;KEGG=Os12t0618800-01;Subcellular location=nucleus (GO:0005634), plasma membrane (GO:0005886), Golgi apparatus (GO:0005794)
Chr12	irgsp1_rep	five_prime_UTR	26365127	26365704	.	-	.	Parent=Os12t0618800-01
Chr12	irgsp1_rep	CDS	26364029	26365126	.	-	0	Parent=Os12t0618800-01
Chr12	irgsp1_rep	three_prime_UTR	26363990	26364028	.	-	.	Parent=Os12t0618800-01
Chr12	irgsp1_rep	three_prime_UTR	26363271	26363676	.	-	.	Parent=Os12t0618800-01
Chr12	irgsp1_rep	mRNA	26369246	26374651	.	-	.	ID=Os12t0619000-01;Name=Os12t0619000-01;Locus_id=Os12g0619000;Note=IQ calmodulin-binding region domain containing protein.;Transcript_evidence=AK102525 (DDBJ%2C Best hit);ORF_evidence=NP_001149049.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515);InterPro=IQ motif%2C EF-hand binding site (IPR000048);NIAS_FLcDNA=J033096B18;Expression=AK102525;TENOR=Os12t0619000-01;KEGG=Os12t0619000-01
Chr12	irgsp1_rep	five_prime_UTR	26374504	26374651	.	-	.	Parent=Os12t0619000-01
Chr12	irgsp1_rep	five_prime_UTR	26373306	26373351	.	-	.	Parent=Os12t0619000-01
Chr12	irgsp1_rep	CDS	26373222	26373305	.	-	0	Parent=Os12t0619000-01
Chr12	irgsp1_rep	CDS	26372032	26372268	.	-	0	Parent=Os12t0619000-01
Chr12	irgsp1_rep	CDS	26370953	26371180	.	-	0	Parent=Os12t0619000-01
Chr12	irgsp1_rep	CDS	26370704	26370817	.	-	0	Parent=Os12t0619000-01
Chr12	irgsp1_rep	CDS	26369940	26370441	.	-	0	Parent=Os12t0619000-01
Chr12	irgsp1_rep	CDS	26369568	26369731	.	-	2	Parent=Os12t0619000-01
Chr12	irgsp1_rep	three_prime_UTR	26369246	26369567	.	-	.	Parent=Os12t0619000-01
Chr12	irgsp1_rep	mRNA	26377806	26379849	.	+	.	ID=Os12t0619100-00;Name=Os12t0619100-00;Locus_id=Os12g0619100;Oryzabase Gene Symbol Synonym(s)=OsDjA12;Oryzabase Gene Name Synonym(s)=DnaJ domain protein A12;Note=Heat shock protein DnaJ%2C cysteine-rich domain domain containing protein.;Transcript_evidence=AK360735 (DDBJ);ORF_evidence=Q2QM34 (UniProt);GO=Biological Process: protein folding (GO:0006457),Molecular Function: heat shock protein binding (GO:0031072),Molecular Function: unfolded protein binding (GO:0051082);InterPro=Heat shock protein DnaJ%2C cysteine-rich domain (IPR001305),Heat shock protein DnaJ%2C N-terminal (IPR001623),Chaperone DnaJ%2C C-terminal (IPR002939),Heat shock protein DnaJ (IPR003095),HSP40/DnaJ peptide-binding (IPR008971),Heat shock protein DnaJ%2C conserved site (IPR018253);Oryzabase=12149;TENOR=Os12t0619100-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	26377806	26377867	.	+	.	Parent=Os12t0619100-00
Chr12	irgsp1_rep	CDS	26377868	26378242	.	+	0	Parent=Os12t0619100-00
Chr12	irgsp1_rep	CDS	26378354	26378442	.	+	0	Parent=Os12t0619100-00
Chr12	irgsp1_rep	CDS	26378935	26379205	.	+	1	Parent=Os12t0619100-00
Chr12	irgsp1_rep	CDS	26379292	26379849	.	+	0	Parent=Os12t0619100-00
Chr12	irgsp1_rep	mRNA	26381679	26400289	.	+	.	ID=Os12t0619700-00;Name=Os12t0619700-00;Locus_id=Os12g0619700;Note=Conserved hypothetical protein.;Transcript_evidence=AK356476 (DDBJ);ORF_evidence=Q2QM33 (UniProt);TENOR=Os12t0619700-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	26381679	26382203	.	+	0	Parent=Os12t0619700-00
Chr12	irgsp1_rep	CDS	26399666	26400289	.	+	0	Parent=Os12t0619700-00
Chr12	irgsp1_rep	mRNA	26415934	26419191	.	+	.	ID=Os12t0620000-00;Name=Os12t0620000-00;Locus_id=Os12g0620000;Note=Similar to Leucine Rich Repeat family protein.;Transcript_evidence=EU423905 (DDBJ);ORF_evidence=Q2QM26 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Concanavalin A-like lectin/glucanase%2C subgroup (IPR013320),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);TENOR=Os12t0620000-00;KEGG=Os12t0620000-00
Chr12	irgsp1_rep	CDS	26415934	26418736	.	+	0	Parent=Os12t0620000-00
Chr12	irgsp1_rep	CDS	26418845	26419191	.	+	2	Parent=Os12t0620000-00
Chr12	irgsp1_rep	mRNA	26420683	26421144	.	+	.	ID=Os12t0620100-00;Name=Os12t0620100-00;Locus_id=Os12g0620100;Note=Zinc finger%2C RING-type domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B9GEB9 (UniProt);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-H2-type (IPR024766);TENOR=Os12t0620100-00
Chr12	irgsp1_rep	CDS	26420683	26421144	.	+	0	Parent=Os12t0620100-00
Chr12	irgsp1_rep	mRNA	26425613	26430083	.	-	.	ID=Os12t0620400-01;Name=Os12t0620400-01;Locus_id=Os12g0620400;Oryzabase Gene Symbol Synonym(s)=OsMeCP%2C MeCP;Oryzabase Gene Name Synonym(s)=methyl-CpG binding domain protein%2C Methyl-CpG binding domain containing protein;Note=Methyl-CpG DNA binding domain containing protein.;Transcript_evidence=AK059006 (DDBJ%2C Best hit);ORF_evidence=NP_001105175.1 (RefSeq);GO=Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677);InterPro=Methyl-CpG DNA binding (IPR001739),DNA-binding%2C integrase-type (IPR016177);NIAS_FLcDNA=001-020-H05;Oryzabase=21434;Expression=AK059006;TENOR=Os12t0620400-01;KEGG=Os12t0620400-01
Chr12	irgsp1_rep	five_prime_UTR	26429947	26430083	.	-	.	Parent=Os12t0620400-01
Chr12	irgsp1_rep	CDS	26429821	26429946	.	-	0	Parent=Os12t0620400-01
Chr12	irgsp1_rep	CDS	26426685	26426826	.	-	0	Parent=Os12t0620400-01
Chr12	irgsp1_rep	CDS	26425925	26426568	.	-	2	Parent=Os12t0620400-01
Chr12	irgsp1_rep	three_prime_UTR	26425613	26425924	.	-	.	Parent=Os12t0620400-01
Chr12	irgsp1_rep	mRNA	26425353	26430048	.	-	.	ID=Os12t0620400-02;Name=Os12t0620400-02;Locus_id=Os12g0620400;Oryzabase Gene Symbol Synonym(s)=OsMeCP%2C MeCP;Oryzabase Gene Name Synonym(s)=methyl-CpG binding domain protein%2C Methyl-CpG binding domain containing protein;Note=Similar to Brain acid soluble protein 1 (Fragment).;Transcript_evidence=AK059973 (DDBJ%2C Best hit);ORF_evidence=Q2QM23 (UniProt);GO=Molecular Function: DNA binding (GO:0003677);InterPro=DNA-binding%2C integrase-type (IPR016177),Alpha-galactosidase%2C NEW3 domain (IPR018905);NIAS_FLcDNA=006-211-H11;Oryzabase=21434;Expression=AK059973;TENOR=Os12t0620400-02;KEGG=Os12t0620400-02
Chr12	irgsp1_rep	five_prime_UTR	26429947	26430048	.	-	.	Parent=Os12t0620400-02
Chr12	irgsp1_rep	CDS	26429821	26429946	.	-	0	Parent=Os12t0620400-02
Chr12	irgsp1_rep	CDS	26426778	26426826	.	-	0	Parent=Os12t0620400-02
Chr12	irgsp1_rep	CDS	26425925	26426103	.	-	2	Parent=Os12t0620400-02
Chr12	irgsp1_rep	three_prime_UTR	26425353	26425924	.	-	.	Parent=Os12t0620400-02
Chr12	irgsp1_rep	mRNA	26426078	26430048	.	-	.	ID=Os12t0620400-04;Name=Os12t0620400-04;Locus_id=Os12g0620400;Oryzabase Gene Symbol Synonym(s)=OsMeCP%2C MeCP;Oryzabase Gene Name Synonym(s)=methyl-CpG binding domain protein%2C Methyl-CpG binding domain containing protein;Note=Methyl-CpG DNA binding domain containing protein.;Transcript_evidence=AK072934 (DDBJ%2C Best hit),AK063843 (DDBJ%2C Best hit),AK072503 (DDBJ%2C Best hit);ORF_evidence=Q2QM23 (UniProt);NIAS_FLcDNA=J023146E17,001-122-C03,J023126H05;Oryzabase=21434;Expression=AK072934;TENOR=Os12t0620400-04;KEGG=Os12t0620400-04
Chr12	irgsp1_rep	five_prime_UTR	26429947	26430048	.	-	.	Parent=Os12t0620400-04
Chr12	irgsp1_rep	CDS	26429821	26429946	.	-	0	Parent=Os12t0620400-04
Chr12	irgsp1_rep	CDS	26426685	26426826	.	-	0	Parent=Os12t0620400-04
Chr12	irgsp1_rep	CDS	26426078	26426568	.	-	2	Parent=Os12t0620400-04
Chr12	irgsp1_rep	mRNA	26433354	26437997	.	-	.	ID=Os12t0620600-01;Name=Os12t0620600-01;Locus_id=Os12g0620600;Note=Conserved hypothetical protein.;Transcript_evidence=AK119567 (DDBJ%2C Best hit),AK066151 (DDBJ%2C Best hit);ORF_evidence=A2ZMV2 (UniProt);NIAS_FLcDNA=002-117-A06,J013056H03;TENOR=Os12t0620600-01;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	26437731	26437997	.	-	.	Parent=Os12t0620600-01
Chr12	irgsp1_rep	CDS	26437380	26437730	.	-	0	Parent=Os12t0620600-01
Chr12	irgsp1_rep	CDS	26435707	26435853	.	-	0	Parent=Os12t0620600-01
Chr12	irgsp1_rep	CDS	26434896	26435591	.	-	0	Parent=Os12t0620600-01
Chr12	irgsp1_rep	CDS	26433696	26434763	.	-	0	Parent=Os12t0620600-01
Chr12	irgsp1_rep	three_prime_UTR	26433354	26433695	.	-	.	Parent=Os12t0620600-01
Chr12	irgsp1_rep	mRNA	26433411	26437992	.	+	.	ID=Os12t0620733-00;Name=Os12t0620733-00;Locus_id=Os12g0620733;Note=Hypothetical protein.;Transcript_evidence=tplb0032b23 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0620733-00
Chr12	irgsp1_rep	five_prime_UTR	26433411	26434770	.	+	.	Parent=Os12t0620733-00
Chr12	irgsp1_rep	five_prime_UTR	26434900	26435591	.	+	.	Parent=Os12t0620733-00
Chr12	irgsp1_rep	five_prime_UTR	26435707	26435714	.	+	.	Parent=Os12t0620733-00
Chr12	irgsp1_rep	CDS	26435715	26435855	.	+	0	Parent=Os12t0620733-00
Chr12	irgsp1_rep	CDS	26437390	26437872	.	+	0	Parent=Os12t0620733-00
Chr12	irgsp1_rep	three_prime_UTR	26437873	26437992	.	+	.	Parent=Os12t0620733-00
Chr12	irgsp1_rep	mRNA	26449121	26449255	.	+	.	ID=Os12t0620866-00;Name=Os12t0620866-00;Locus_id=Os12g0620866;Note=Non-protein coding transcript.;Transcript_evidence=BT087207 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0620866-00
Chr12	irgsp1_rep	exon	26449121	26449255	.	+	.	Parent=Os12t0620866-00
Chr12	irgsp1_rep	mRNA	26455060	26460984	.	+	.	ID=Os12t0621000-00;Name=Os12t0621000-00;Locus_id=Os12g0621000;CGSNL Gene Symbol=UBP4-8;CGSNL Gene Name=UBIQUITIN-SPECIFIC PROCESSING PROTEASE 4-8;Oryzabase Gene Symbol Synonym(s)=OsUBP4-8%2C OsUBP8%2C UBP8;Oryzabase Gene Name Synonym(s)=ubiquitin-specific processing protease 4-8%2C Ubiquitin-specific protease 8;Note=Similar to Ubiquitin carboxyl-terminal hydrolase.;Transcript_evidence=AK363908 (DDBJ);ORF_evidence=C5YSF2 (UniProt);GO=Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511),Molecular Function: ubiquitin thiolesterase activity (GO:0004221);InterPro=Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2 (IPR001394),Peptidase C19%2C ubiquitin carboxyl-terminal hydrolase 2%2C conserved site (IPR018200);Oryzabase=22883;TENOR=Os12t0621000-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	26455060	26455236	.	+	.	Parent=Os12t0621000-00
Chr12	irgsp1_rep	five_prime_UTR	26455341	26455758	.	+	.	Parent=Os12t0621000-00
Chr12	irgsp1_rep	CDS	26455759	26455778	.	+	0	Parent=Os12t0621000-00
Chr12	irgsp1_rep	CDS	26456690	26456825	.	+	1	Parent=Os12t0621000-00
Chr12	irgsp1_rep	CDS	26456946	26457005	.	+	0	Parent=Os12t0621000-00
Chr12	irgsp1_rep	CDS	26457092	26457184	.	+	0	Parent=Os12t0621000-00
Chr12	irgsp1_rep	CDS	26457865	26458174	.	+	0	Parent=Os12t0621000-00
Chr12	irgsp1_rep	CDS	26458278	26458354	.	+	2	Parent=Os12t0621000-00
Chr12	irgsp1_rep	three_prime_UTR	26458355	26458412	.	+	.	Parent=Os12t0621000-00
Chr12	irgsp1_rep	three_prime_UTR	26458756	26458926	.	+	.	Parent=Os12t0621000-00
Chr12	irgsp1_rep	three_prime_UTR	26459398	26459655	.	+	.	Parent=Os12t0621000-00
Chr12	irgsp1_rep	three_prime_UTR	26459744	26459889	.	+	.	Parent=Os12t0621000-00
Chr12	irgsp1_rep	three_prime_UTR	26459979	26460536	.	+	.	Parent=Os12t0621000-00
Chr12	irgsp1_rep	three_prime_UTR	26460711	26460984	.	+	.	Parent=Os12t0621000-00
Chr12	irgsp1_rep	mRNA	26455338	26461275	.	-	.	ID=Os12t0621025-00;Name=Os12t0621025-00;Locus_id=Os12g0621025;Note=Hypothetical protein.;Transcript_evidence=tplb0053f14 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0621025-00
Chr12	irgsp1_rep	five_prime_UTR	26461148	26461275	.	-	.	Parent=Os12t0621025-00
Chr12	irgsp1_rep	five_prime_UTR	26460710	26460965	.	-	.	Parent=Os12t0621025-00
Chr12	irgsp1_rep	five_prime_UTR	26459906	26460535	.	-	.	Parent=Os12t0621025-00
Chr12	irgsp1_rep	CDS	26459750	26459905	.	-	0	Parent=Os12t0621025-00
Chr12	irgsp1_rep	CDS	26459400	26459663	.	-	0	Parent=Os12t0621025-00
Chr12	irgsp1_rep	three_prime_UTR	26459396	26459399	.	-	.	Parent=Os12t0621025-00
Chr12	irgsp1_rep	three_prime_UTR	26458754	26458919	.	-	.	Parent=Os12t0621025-00
Chr12	irgsp1_rep	three_prime_UTR	26458252	26458410	.	-	.	Parent=Os12t0621025-00
Chr12	irgsp1_rep	three_prime_UTR	26458026	26458158	.	-	.	Parent=Os12t0621025-00
Chr12	irgsp1_rep	three_prime_UTR	26457073	26457290	.	-	.	Parent=Os12t0621025-00
Chr12	irgsp1_rep	three_prime_UTR	26456807	26456988	.	-	.	Parent=Os12t0621025-00
Chr12	irgsp1_rep	three_prime_UTR	26455338	26455583	.	-	.	Parent=Os12t0621025-00
Chr12	irgsp1_rep	mRNA	26464988	26465784	.	-	.	ID=Os12t0621050-00;Name=Os12t0621050-00;Locus_id=Os12g0621050;Note=Non-protein coding transcript.;Transcript_evidence=CT835525 (DDBJ%2C Best hit);ORF_evidence=NONE;TENOR=Os12t0621050-00
Chr12	irgsp1_rep	exon	26465514	26465784	.	-	.	Parent=Os12t0621050-00
Chr12	irgsp1_rep	exon	26465372	26465442	.	-	.	Parent=Os12t0621050-00
Chr12	irgsp1_rep	exon	26464988	26465251	.	-	.	Parent=Os12t0621050-00
Chr12	irgsp1_rep	mRNA	26477638	26487242	.	+	.	ID=Os12t0621100-01;Name=Os12t0621100-01;Locus_id=Os12g0621100;CGSNL Gene Symbol=YAB6;CGSNL Gene Name=YABBY6;Oryzabase Gene Symbol Synonym(s)=OsYAB6%2C OsYAB5;Oryzabase Gene Name Synonym(s)=YABBY 6%2C OsYABBY6%2C Os YABBY6;Note=Similar to Filamentous flower-like yabby protein (Fragment).;Transcript_evidence=AK070737 (DDBJ%2C Best hit);ORF_evidence=B7EXC7 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=High mobility group%2C HMG1/HMG2 (IPR000910),YABBY protein (IPR006780),High mobility group%2C superfamily (IPR009071);NIAS_FLcDNA=J023061C09;Oryzabase=10363;Expression=AK070737;TENOR=Os12t0621100-01;KEGG=Os12t0621100-01
Chr12	irgsp1_rep	five_prime_UTR	26477638	26478183	.	+	.	Parent=Os12t0621100-01
Chr12	irgsp1_rep	CDS	26478184	26478255	.	+	0	Parent=Os12t0621100-01
Chr12	irgsp1_rep	CDS	26482761	26482898	.	+	0	Parent=Os12t0621100-01
Chr12	irgsp1_rep	CDS	26485091	26485253	.	+	0	Parent=Os12t0621100-01
Chr12	irgsp1_rep	CDS	26485609	26485657	.	+	2	Parent=Os12t0621100-01
Chr12	irgsp1_rep	CDS	26485759	26485834	.	+	1	Parent=Os12t0621100-01
Chr12	irgsp1_rep	CDS	26486792	26486917	.	+	0	Parent=Os12t0621100-01
Chr12	irgsp1_rep	three_prime_UTR	26486918	26487242	.	+	.	Parent=Os12t0621100-01
Chr12	irgsp1_rep	mRNA	26477827	26487296	.	+	.	ID=Os12t0621100-02;Name=Os12t0621100-02;Locus_id=Os12g0621100;CGSNL Gene Symbol=YAB6;CGSNL Gene Name=YABBY6;Oryzabase Gene Symbol Synonym(s)=OsYAB6%2C OsYAB5;Oryzabase Gene Name Synonym(s)=YABBY 6%2C OsYABBY6%2C Os YABBY6;Note=Similar to Filamentous flower-like yabby protein (Fragment).;Transcript_evidence=AK104918 (DDBJ%2C Best hit);ORF_evidence=Q2QM17 (UniProt);GO=Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=High mobility group%2C HMG1/HMG2 (IPR000910),YABBY protein (IPR006780),High mobility group%2C superfamily (IPR009071);NIAS_FLcDNA=001-047-F07;Oryzabase=10363;Expression=AK104918;TENOR=Os12t0621100-02;KEGG=Os12t0621100-02
Chr12	irgsp1_rep	five_prime_UTR	26477827	26478183	.	+	.	Parent=Os12t0621100-02
Chr12	irgsp1_rep	CDS	26478184	26478255	.	+	0	Parent=Os12t0621100-02
Chr12	irgsp1_rep	CDS	26482761	26482898	.	+	0	Parent=Os12t0621100-02
Chr12	irgsp1_rep	CDS	26485091	26485253	.	+	0	Parent=Os12t0621100-02
Chr12	irgsp1_rep	CDS	26485609	26485657	.	+	2	Parent=Os12t0621100-02
Chr12	irgsp1_rep	CDS	26485759	26485834	.	+	1	Parent=Os12t0621100-02
Chr12	irgsp1_rep	CDS	26486792	26486917	.	+	0	Parent=Os12t0621100-02
Chr12	irgsp1_rep	three_prime_UTR	26486918	26487296	.	+	.	Parent=Os12t0621100-02
Chr12	irgsp1_rep	mRNA	26502398	26504595	.	-	.	ID=Os12t0621300-01;Name=Os12t0621300-01;Locus_id=Os12g0621300;Note=Hypothetical conserved gene.;Transcript_evidence=AK101072 (DDBJ%2C Best hit);ORF_evidence=Q2QM14 (UniProt);InterPro=Transposase%2C MuDR%2C plant (IPR004332),MULE transposase domain (IPR018289);NIAS_FLcDNA=J033024A10;Expression=AK101072;TENOR=Os12t0621300-01;KEGG=Os12t0621300-01
Chr12	irgsp1_rep	five_prime_UTR	26504209	26504595	.	-	.	Parent=Os12t0621300-01
Chr12	irgsp1_rep	CDS	26504177	26504208	.	-	0	Parent=Os12t0621300-01
Chr12	irgsp1_rep	CDS	26503110	26504103	.	-	1	Parent=Os12t0621300-01
Chr12	irgsp1_rep	CDS	26502398	26503030	.	-	0	Parent=Os12t0621300-01
Chr12	irgsp1_rep	mRNA	26498568	26504588	.	-	.	ID=Os12t0621300-02;Name=Os12t0621300-02;Locus_id=Os12g0621300;Note=Zinc finger%2C PMZ-type domain containing protein.;Transcript_evidence=AK110775 (DDBJ%2C Best hit);ORF_evidence=Q2QM15 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C PMZ-type (IPR006564),Zinc finger%2C SWIM-type (IPR007527);NIAS_FLcDNA=002-171-B05;TENOR=Os12t0621300-02;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	26504177	26504588	.	-	.	Parent=Os12t0621300-02
Chr12	irgsp1_rep	five_prime_UTR	26500918	26500983	.	-	.	Parent=Os12t0621300-02
Chr12	irgsp1_rep	five_prime_UTR	26499350	26499788	.	-	.	Parent=Os12t0621300-02
Chr12	irgsp1_rep	CDS	26498568	26499349	.	-	0	Parent=Os12t0621300-02
Chr12	irgsp1_rep	mRNA	26506314	26507238	.	-	.	ID=Os12t0621400-00;Name=Os12t0621400-00;Locus_id=Os12g0621400;Note=Conserved hypothetical protein.;Transcript_evidence=tplb0017c06 (Wheat FLcDNA);ORF_evidence=NP_001067301.2 (RefSeq);TENOR=Os12t0621400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	26506534	26507238	.	-	0	Parent=Os12t0621400-00
Chr12	irgsp1_rep	three_prime_UTR	26506314	26506533	.	-	.	Parent=Os12t0621400-00
Chr12	irgsp1_rep	mRNA	26507440	26513551	.	+	.	ID=Os12t0621500-01;Name=Os12t0621500-01;Locus_id=Os12g0621500;Oryzabase Gene Symbol Synonym(s)=OsSTA290;Note=Similar to IRE.;Transcript_evidence=AK111785 (DDBJ%2C Best hit);ORF_evidence=NP_201037.1 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),AGC-kinase%2C C-terminal (IPR000961),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J023089N11;Oryzabase=19542;Expression=AK111785;TENOR=Os12t0621500-01;KEGG=Os12t0621500-01
Chr12	irgsp1_rep	five_prime_UTR	26507440	26507580	.	+	.	Parent=Os12t0621500-01
Chr12	irgsp1_rep	CDS	26507581	26507586	.	+	0	Parent=Os12t0621500-01
Chr12	irgsp1_rep	CDS	26507691	26509067	.	+	0	Parent=Os12t0621500-01
Chr12	irgsp1_rep	CDS	26509174	26509296	.	+	0	Parent=Os12t0621500-01
Chr12	irgsp1_rep	CDS	26509440	26509612	.	+	0	Parent=Os12t0621500-01
Chr12	irgsp1_rep	CDS	26509776	26510016	.	+	1	Parent=Os12t0621500-01
Chr12	irgsp1_rep	CDS	26510375	26510467	.	+	0	Parent=Os12t0621500-01
Chr12	irgsp1_rep	CDS	26510536	26510676	.	+	0	Parent=Os12t0621500-01
Chr12	irgsp1_rep	CDS	26510802	26510894	.	+	0	Parent=Os12t0621500-01
Chr12	irgsp1_rep	CDS	26511077	26511281	.	+	0	Parent=Os12t0621500-01
Chr12	irgsp1_rep	CDS	26511437	26511522	.	+	2	Parent=Os12t0621500-01
Chr12	irgsp1_rep	CDS	26511976	26512064	.	+	0	Parent=Os12t0621500-01
Chr12	irgsp1_rep	CDS	26512213	26512264	.	+	1	Parent=Os12t0621500-01
Chr12	irgsp1_rep	CDS	26512342	26512398	.	+	0	Parent=Os12t0621500-01
Chr12	irgsp1_rep	CDS	26512490	26512657	.	+	0	Parent=Os12t0621500-01
Chr12	irgsp1_rep	CDS	26512763	26512843	.	+	0	Parent=Os12t0621500-01
Chr12	irgsp1_rep	CDS	26512926	26513006	.	+	0	Parent=Os12t0621500-01
Chr12	irgsp1_rep	three_prime_UTR	26513007	26513028	.	+	.	Parent=Os12t0621500-01
Chr12	irgsp1_rep	three_prime_UTR	26513132	26513551	.	+	.	Parent=Os12t0621500-01
Chr12	irgsp1_rep	mRNA	26513858	26514636	.	-	.	ID=Os12t0621600-01;Name=Os12t0621600-01;Locus_id=Os12g0621600;Oryzabase Gene Symbol Synonym(s)=OsEnS-151;Oryzabase Gene Name Synonym(s)=endosperm-specific gene 151;Note=Conserved hypothetical protein.;Transcript_evidence=AK107596 (DDBJ%2C Best hit);ORF_evidence=B8BN30 (UniProt);NIAS_FLcDNA=002-131-A12;Oryzabase=18434;Expression=AK107596;TENOR=Os12t0621600-01;KEGG=Os12t0621600-01
Chr12	irgsp1_rep	CDS	26514453	26514636	.	-	0	Parent=Os12t0621600-01
Chr12	irgsp1_rep	CDS	26514125	26514366	.	-	2	Parent=Os12t0621600-01
Chr12	irgsp1_rep	three_prime_UTR	26513858	26514124	.	-	.	Parent=Os12t0621600-01
Chr12	irgsp1_rep	mRNA	26530282	26536043	.	+	.	ID=Os12t0621700-01;Name=Os12t0621700-01;Locus_id=Os12g0621700;Note=Conserved hypothetical protein.;Transcript_evidence=AK073528 (DDBJ%2C Best hit);ORF_evidence=B8BN34 (UniProt);NIAS_FLcDNA=J033044P17;Expression=AK073528;TENOR=Os12t0621700-01;KEGG=Os12t0621700-01
Chr12	irgsp1_rep	five_prime_UTR	26530282	26530454	.	+	.	Parent=Os12t0621700-01
Chr12	irgsp1_rep	five_prime_UTR	26530857	26530935	.	+	.	Parent=Os12t0621700-01
Chr12	irgsp1_rep	CDS	26530936	26531037	.	+	0	Parent=Os12t0621700-01
Chr12	irgsp1_rep	CDS	26531633	26531706	.	+	0	Parent=Os12t0621700-01
Chr12	irgsp1_rep	CDS	26531787	26531904	.	+	1	Parent=Os12t0621700-01
Chr12	irgsp1_rep	CDS	26531991	26532061	.	+	0	Parent=Os12t0621700-01
Chr12	irgsp1_rep	CDS	26532148	26532313	.	+	1	Parent=Os12t0621700-01
Chr12	irgsp1_rep	CDS	26532390	26532589	.	+	0	Parent=Os12t0621700-01
Chr12	irgsp1_rep	CDS	26533113	26533324	.	+	1	Parent=Os12t0621700-01
Chr12	irgsp1_rep	CDS	26533401	26533496	.	+	2	Parent=Os12t0621700-01
Chr12	irgsp1_rep	CDS	26533848	26533966	.	+	2	Parent=Os12t0621700-01
Chr12	irgsp1_rep	CDS	26534396	26534497	.	+	0	Parent=Os12t0621700-01
Chr12	irgsp1_rep	CDS	26534588	26534697	.	+	0	Parent=Os12t0621700-01
Chr12	irgsp1_rep	CDS	26534784	26534871	.	+	1	Parent=Os12t0621700-01
Chr12	irgsp1_rep	CDS	26535079	26535278	.	+	0	Parent=Os12t0621700-01
Chr12	irgsp1_rep	CDS	26535360	26535564	.	+	1	Parent=Os12t0621700-01
Chr12	irgsp1_rep	three_prime_UTR	26535565	26536043	.	+	.	Parent=Os12t0621700-01
Chr12	irgsp1_rep	mRNA	26535052	26535566	.	-	.	ID=Os12t0621766-00;Name=Os12t0621766-00;Locus_id=Os12g0621766;Note=Hypothetical protein.;Transcript_evidence=EU947100 (DDBJ);ORF_evidence=GeneMark;TENOR=Os12t0621766-00
Chr12	irgsp1_rep	five_prime_UTR	26535525	26535566	.	-	.	Parent=Os12t0621766-00
Chr12	irgsp1_rep	CDS	26535183	26535524	.	-	0	Parent=Os12t0621766-00
Chr12	irgsp1_rep	three_prime_UTR	26535052	26535182	.	-	.	Parent=Os12t0621766-00
Chr12	irgsp1_rep	mRNA	26543468	26544296	.	-	.	ID=Os12t0621832-00;Name=Os12t0621832-00;Locus_id=Os12g0621832;Note=Similar to H0315A08.1 protein.;Transcript_evidence=FP099421 (DDBJ);ORF_evidence=Q01I63 (UniProt);InterPro=Ribonuclease H1%2C N-terminal (IPR011320);TENOR=Os12t0621832-00
Chr12	irgsp1_rep	five_prime_UTR	26544293	26544296	.	-	.	Parent=Os12t0621832-00
Chr12	irgsp1_rep	CDS	26543468	26544292	.	-	0	Parent=Os12t0621832-00
Chr12	irgsp1_rep	mRNA	26548466	26555846	.	+	.	ID=Os12t0621900-01;Name=Os12t0621900-01;Locus_id=Os12g0621900;Note=Similar to Mov34/MPN/PAD-1 family protein%2C expressed.;Transcript_evidence=AK068389 (DDBJ%2C Best hit);ORF_evidence=Q2QM04 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Mov34/MPN/PAD-1 (IPR000555);NIAS_FLcDNA=J013146P10;TENOR=Os12t0621900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	26548466	26548896	.	+	.	Parent=Os12t0621900-01
Chr12	irgsp1_rep	five_prime_UTR	26548974	26549078	.	+	.	Parent=Os12t0621900-01
Chr12	irgsp1_rep	CDS	26549079	26549085	.	+	0	Parent=Os12t0621900-01
Chr12	irgsp1_rep	CDS	26551544	26551885	.	+	2	Parent=Os12t0621900-01
Chr12	irgsp1_rep	CDS	26551964	26552052	.	+	2	Parent=Os12t0621900-01
Chr12	irgsp1_rep	CDS	26552633	26552726	.	+	0	Parent=Os12t0621900-01
Chr12	irgsp1_rep	CDS	26552895	26552956	.	+	2	Parent=Os12t0621900-01
Chr12	irgsp1_rep	CDS	26553033	26553115	.	+	0	Parent=Os12t0621900-01
Chr12	irgsp1_rep	CDS	26553237	26553345	.	+	1	Parent=Os12t0621900-01
Chr12	irgsp1_rep	CDS	26553454	26553495	.	+	0	Parent=Os12t0621900-01
Chr12	irgsp1_rep	CDS	26553596	26553760	.	+	0	Parent=Os12t0621900-01
Chr12	irgsp1_rep	CDS	26554609	26554785	.	+	0	Parent=Os12t0621900-01
Chr12	irgsp1_rep	CDS	26555264	26555428	.	+	0	Parent=Os12t0621900-01
Chr12	irgsp1_rep	CDS	26555513	26555776	.	+	0	Parent=Os12t0621900-01
Chr12	irgsp1_rep	three_prime_UTR	26555777	26555846	.	+	.	Parent=Os12t0621900-01
Chr12	irgsp1_rep	mRNA	26551391	26555810	.	+	.	ID=Os12t0621900-02;Name=Os12t0621900-02;Locus_id=Os12g0621900;Note=Similar to Mov34/MPN/PAD-1 family protein%2C expressed.;Transcript_evidence=AK072851 (DDBJ%2C Best hit);ORF_evidence=Q2QM04 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Mov34/MPN/PAD-1 (IPR000555);NIAS_FLcDNA=J023135N05;Expression=AK072851;TENOR=Os12t0621900-02;KEGG=Os12t0621900-02
Chr12	irgsp1_rep	five_prime_UTR	26551391	26551485	.	+	.	Parent=Os12t0621900-02
Chr12	irgsp1_rep	CDS	26551486	26551885	.	+	0	Parent=Os12t0621900-02
Chr12	irgsp1_rep	CDS	26551964	26552052	.	+	2	Parent=Os12t0621900-02
Chr12	irgsp1_rep	CDS	26552633	26552726	.	+	0	Parent=Os12t0621900-02
Chr12	irgsp1_rep	CDS	26552895	26552956	.	+	2	Parent=Os12t0621900-02
Chr12	irgsp1_rep	CDS	26553033	26553115	.	+	0	Parent=Os12t0621900-02
Chr12	irgsp1_rep	CDS	26553237	26553345	.	+	1	Parent=Os12t0621900-02
Chr12	irgsp1_rep	CDS	26553454	26553495	.	+	0	Parent=Os12t0621900-02
Chr12	irgsp1_rep	CDS	26553596	26553760	.	+	0	Parent=Os12t0621900-02
Chr12	irgsp1_rep	CDS	26554609	26554785	.	+	0	Parent=Os12t0621900-02
Chr12	irgsp1_rep	CDS	26555264	26555428	.	+	0	Parent=Os12t0621900-02
Chr12	irgsp1_rep	CDS	26555513	26555776	.	+	0	Parent=Os12t0621900-02
Chr12	irgsp1_rep	three_prime_UTR	26555777	26555810	.	+	.	Parent=Os12t0621900-02
Chr12	irgsp1_rep	mRNA	26551430	26555878	.	+	.	ID=Os12t0621900-03;Name=Os12t0621900-03;Locus_id=Os12g0621900;Note=Similar to Mov34/MPN/PAD-1 family protein%2C expressed.;Transcript_evidence=AK102645 (DDBJ%2C Best hit);ORF_evidence=Q2QM04 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Mov34/MPN/PAD-1 (IPR000555);NIAS_FLcDNA=J033100G22;Expression=AK102645;TENOR=Os12t0621900-03;KEGG=Os12t0621900-03
Chr12	irgsp1_rep	five_prime_UTR	26551430	26551485	.	+	.	Parent=Os12t0621900-03
Chr12	irgsp1_rep	CDS	26551486	26551885	.	+	0	Parent=Os12t0621900-03
Chr12	irgsp1_rep	CDS	26551964	26552052	.	+	2	Parent=Os12t0621900-03
Chr12	irgsp1_rep	CDS	26552633	26552726	.	+	0	Parent=Os12t0621900-03
Chr12	irgsp1_rep	CDS	26552895	26552956	.	+	2	Parent=Os12t0621900-03
Chr12	irgsp1_rep	CDS	26553033	26553115	.	+	0	Parent=Os12t0621900-03
Chr12	irgsp1_rep	CDS	26553237	26553345	.	+	1	Parent=Os12t0621900-03
Chr12	irgsp1_rep	CDS	26553454	26553495	.	+	0	Parent=Os12t0621900-03
Chr12	irgsp1_rep	CDS	26553596	26553760	.	+	0	Parent=Os12t0621900-03
Chr12	irgsp1_rep	CDS	26554609	26554785	.	+	0	Parent=Os12t0621900-03
Chr12	irgsp1_rep	CDS	26555513	26555776	.	+	0	Parent=Os12t0621900-03
Chr12	irgsp1_rep	three_prime_UTR	26555777	26555878	.	+	.	Parent=Os12t0621900-03
Chr12	irgsp1_rep	mRNA	26551433	26555846	.	+	.	ID=Os12t0621900-04;Name=Os12t0621900-04;Locus_id=Os12g0621900;Note=Similar to Mov34/MPN/PAD-1 family protein%2C expressed.;Transcript_evidence=AK103987 (DDBJ%2C Best hit);ORF_evidence=Q2QM04 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Mov34/MPN/PAD-1 (IPR000555);NIAS_FLcDNA=001-017-H11;Expression=AK103987;TENOR=Os12t0621900-04;KEGG=Os12t0621900-04
Chr12	irgsp1_rep	five_prime_UTR	26551433	26551485	.	+	.	Parent=Os12t0621900-04
Chr12	irgsp1_rep	CDS	26551486	26551885	.	+	0	Parent=Os12t0621900-04
Chr12	irgsp1_rep	CDS	26551964	26552052	.	+	2	Parent=Os12t0621900-04
Chr12	irgsp1_rep	CDS	26552633	26552726	.	+	0	Parent=Os12t0621900-04
Chr12	irgsp1_rep	CDS	26552895	26552956	.	+	2	Parent=Os12t0621900-04
Chr12	irgsp1_rep	CDS	26553033	26553115	.	+	0	Parent=Os12t0621900-04
Chr12	irgsp1_rep	CDS	26553237	26553345	.	+	1	Parent=Os12t0621900-04
Chr12	irgsp1_rep	CDS	26553454	26553495	.	+	0	Parent=Os12t0621900-04
Chr12	irgsp1_rep	CDS	26553596	26553760	.	+	0	Parent=Os12t0621900-04
Chr12	irgsp1_rep	CDS	26554609	26554785	.	+	0	Parent=Os12t0621900-04
Chr12	irgsp1_rep	CDS	26555264	26555428	.	+	0	Parent=Os12t0621900-04
Chr12	irgsp1_rep	CDS	26555513	26555776	.	+	0	Parent=Os12t0621900-04
Chr12	irgsp1_rep	three_prime_UTR	26555777	26555846	.	+	.	Parent=Os12t0621900-04
Chr12	irgsp1_rep	mRNA	26561470	26562019	.	-	.	ID=Os12t0622200-01;Name=Os12t0622200-01;Locus_id=Os12g0622200;Note=Conserved hypothetical protein.;Transcript_evidence=AK062307 (DDBJ%2C Best hit);ORF_evidence=NP_001175015.1 (RefSeq);NIAS_FLcDNA=001-101-B01;Expression=AK062307;TENOR=Os12t0622200-01;KEGG=Os12t0622200-01
Chr12	irgsp1_rep	five_prime_UTR	26561815	26562019	.	-	.	Parent=Os12t0622200-01
Chr12	irgsp1_rep	CDS	26561799	26561814	.	-	0	Parent=Os12t0622200-01
Chr12	irgsp1_rep	CDS	26561570	26561709	.	-	2	Parent=Os12t0622200-01
Chr12	irgsp1_rep	three_prime_UTR	26561470	26561569	.	-	.	Parent=Os12t0622200-01
Chr12	irgsp1_rep	mRNA	26578011	26580981	.	+	.	ID=Os12t0622500-01;Name=Os12t0622500-01;Locus_id=Os12g0622500;RAP-DB Gene Symbol Synonym(s)=OsSpo11-4%2C OsSPO11-4;CGSNL Gene Symbol=SPO11-4;CGSNL Gene Name=TOPOISOMERASE 6 SUBUNIT A;Oryzabase Gene Symbol Synonym(s)=OsSPO11-4%2C OsSPO11D;Oryzabase Gene Name Synonym(s)=sporulation protein11-4;Note=Homologue of the archaeal topoisomerase VIA%2C Mediation of double-strand DNA cleavage%2C Required for meiosis;Transcript_evidence=AK101363;ORF_evidence=Q2QM00;GO=Biological Process: DNA catabolic process%2C endonucleolytic (GO:0000737),Biological Process: DNA metabolic process (GO:0006259),Biological Process: DNA topological change (GO:0006265),Molecular Function: DNA binding (GO:0003677),Molecular Function: catalytic activity (GO:0003824),Molecular Function: DNA topoisomerase type II (ATP-hydrolyzing) activity (GO:0003918),Molecular Function: ATP binding (GO:0005524),Molecular Function: endodeoxyribonuclease activity%2C producing 3'-phosphomonoesters (GO:0016889),Cellular Component: Chromosome (GO:0005694);InterPro=Winged helix-like DNA-binding domain superfamily (IPR036388),Spo11/DNA topoisomerase VI subunit A superfamily (IPR036078),Spo11/DNA topoisomerase VI subunit A (IPR002815),DNA topoisomerase VI%2C subunit A (IPR004085),Spo11/DNA topoisomerase VI%2C subunit A%2C N-terminal (IPR013049),Topoisomerase 6 subunit A/Spo11%2C TOPRIM domain (IPR034136);NIAS_FLcDNA=J033035I21;Manual Curation=August 27%2C 2020;Literature_PMID=32842152,21637817;Oryzabase=9113;Expression=AK101363;TENOR=Os12t0622500-01;KEGG=Os12t0622500-01
Chr12	irgsp1_rep	five_prime_UTR	26578011	26578108	.	+	.	Parent=Os12t0622500-01
Chr12	irgsp1_rep	five_prime_UTR	26579004	26579017	.	+	.	Parent=Os12t0622500-01
Chr12	irgsp1_rep	CDS	26579018	26580433	.	+	0	Parent=Os12t0622500-01
Chr12	irgsp1_rep	CDS	26580542	26580589	.	+	0	Parent=Os12t0622500-01
Chr12	irgsp1_rep	three_prime_UTR	26580590	26580981	.	+	.	Parent=Os12t0622500-01
Chr12	irgsp1_rep	mRNA	26588354	26589334	.	+	.	ID=Os12t0622850-01;Name=Os12t0622850-01;Locus_id=Os12g0622850;Note=Hypothetical gene.;Transcript_evidence=AK242117 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J075146K21;TENOR=Os12t0622850-01;KEGG=Os12t0622850-01
Chr12	irgsp1_rep	five_prime_UTR	26588354	26588355	.	+	.	Parent=Os12t0622850-01
Chr12	irgsp1_rep	CDS	26588356	26588598	.	+	0	Parent=Os12t0622850-01
Chr12	irgsp1_rep	three_prime_UTR	26588599	26589334	.	+	.	Parent=Os12t0622850-01
Chr12	irgsp1_rep	mRNA	26599762	26604728	.	+	.	ID=Os12t0622900-01;Name=Os12t0622900-01;Locus_id=Os12g0622900;Note=Mov34/MPN/PAD-1 family protein.;Transcript_evidence=AK106674 (DDBJ%2C Best hit);ORF_evidence=Q53RR0 (UniProt);GO=Molecular Function: protein binding (GO:0005515);InterPro=Mov34/MPN/PAD-1 (IPR000555),NOP5%2C N-terminal (IPR012974);NIAS_FLcDNA=002-114-A05;Expression=AK106674;TENOR=Os12t0622900-01;KEGG=Os12t0622900-01
Chr12	irgsp1_rep	five_prime_UTR	26599762	26599817	.	+	.	Parent=Os12t0622900-01
Chr12	irgsp1_rep	CDS	26599818	26600085	.	+	0	Parent=Os12t0622900-01
Chr12	irgsp1_rep	CDS	26600190	26600308	.	+	2	Parent=Os12t0622900-01
Chr12	irgsp1_rep	CDS	26601630	26601723	.	+	0	Parent=Os12t0622900-01
Chr12	irgsp1_rep	CDS	26602037	26602098	.	+	2	Parent=Os12t0622900-01
Chr12	irgsp1_rep	CDS	26602172	26602269	.	+	0	Parent=Os12t0622900-01
Chr12	irgsp1_rep	CDS	26602559	26602646	.	+	1	Parent=Os12t0622900-01
Chr12	irgsp1_rep	CDS	26602747	26602788	.	+	0	Parent=Os12t0622900-01
Chr12	irgsp1_rep	CDS	26603095	26603256	.	+	0	Parent=Os12t0622900-01
Chr12	irgsp1_rep	CDS	26603362	26603541	.	+	0	Parent=Os12t0622900-01
Chr12	irgsp1_rep	CDS	26603727	26603894	.	+	0	Parent=Os12t0622900-01
Chr12	irgsp1_rep	CDS	26604424	26604642	.	+	0	Parent=Os12t0622900-01
Chr12	irgsp1_rep	three_prime_UTR	26604643	26604728	.	+	.	Parent=Os12t0622900-01
Chr12	irgsp1_rep	mRNA	26618056	26620854	.	+	.	ID=Os12t0623400-00;Name=Os12t0623400-00;Locus_id=Os12g0623400;Note=Conserved hypothetical protein.;Transcript_evidence=BT069878 (DDBJ);ORF_evidence=NP_001177067.1 (RefSeq);TENOR=Os12t0623400-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	26618056	26618737	.	+	0	Parent=Os12t0623400-00
Chr12	irgsp1_rep	CDS	26618839	26618974	.	+	2	Parent=Os12t0623400-00
Chr12	irgsp1_rep	CDS	26619646	26619661	.	+	1	Parent=Os12t0623400-00
Chr12	irgsp1_rep	three_prime_UTR	26619662	26619709	.	+	.	Parent=Os12t0623400-00
Chr12	irgsp1_rep	three_prime_UTR	26619798	26619846	.	+	.	Parent=Os12t0623400-00
Chr12	irgsp1_rep	three_prime_UTR	26619975	26620045	.	+	.	Parent=Os12t0623400-00
Chr12	irgsp1_rep	three_prime_UTR	26620125	26620210	.	+	.	Parent=Os12t0623400-00
Chr12	irgsp1_rep	three_prime_UTR	26620423	26620525	.	+	.	Parent=Os12t0623400-00
Chr12	irgsp1_rep	three_prime_UTR	26620747	26620854	.	+	.	Parent=Os12t0623400-00
Chr12	irgsp1_rep	mRNA	26621211	26626093	.	-	.	ID=Os12t0623500-01;Name=Os12t0623500-01;Locus_id=Os12g0623500;Oryzabase Gene Symbol Synonym(s)=OsCAT11;Oryzabase Gene Name Synonym(s)=cationic amino acid transporter 11;Note=Similar to Cationic amino acid transporter-like protein.;Transcript_evidence=AK064822 (DDBJ%2C Best hit);ORF_evidence=B6U1T8 (UniProt);GO=Biological Process: amino acid transmembrane transport (GO:0003333),Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: amino acid transmembrane transporter activity (GO:0015171);InterPro=Amino acid/polyamine transporter I (IPR002293),Amino acid permease domain (IPR004841),Cationic amino acid transporter (IPR015606);NIAS_FLcDNA=J013000F01;Oryzabase=18545;TENOR=Os12t0623500-01
Chr12	irgsp1_rep	five_prime_UTR	26625851	26626093	.	-	.	Parent=Os12t0623500-01
Chr12	irgsp1_rep	CDS	26625721	26625850	.	-	0	Parent=Os12t0623500-01
Chr12	irgsp1_rep	CDS	26624734	26624935	.	-	2	Parent=Os12t0623500-01
Chr12	irgsp1_rep	CDS	26624547	26624631	.	-	1	Parent=Os12t0623500-01
Chr12	irgsp1_rep	CDS	26624307	26624447	.	-	0	Parent=Os12t0623500-01
Chr12	irgsp1_rep	CDS	26624097	26624215	.	-	0	Parent=Os12t0623500-01
Chr12	irgsp1_rep	CDS	26623919	26624015	.	-	1	Parent=Os12t0623500-01
Chr12	irgsp1_rep	CDS	26623652	26623824	.	-	0	Parent=Os12t0623500-01
Chr12	irgsp1_rep	CDS	26623498	26623564	.	-	1	Parent=Os12t0623500-01
Chr12	irgsp1_rep	CDS	26622862	26623020	.	-	0	Parent=Os12t0623500-01
Chr12	irgsp1_rep	CDS	26622448	26622682	.	-	0	Parent=Os12t0623500-01
Chr12	irgsp1_rep	CDS	26622255	26622360	.	-	2	Parent=Os12t0623500-01
Chr12	irgsp1_rep	CDS	26622050	26622162	.	-	1	Parent=Os12t0623500-01
Chr12	irgsp1_rep	CDS	26621876	26621951	.	-	2	Parent=Os12t0623500-01
Chr12	irgsp1_rep	CDS	26621617	26621779	.	-	1	Parent=Os12t0623500-01
Chr12	irgsp1_rep	three_prime_UTR	26621211	26621616	.	-	.	Parent=Os12t0623500-01
Chr12	irgsp1_rep	mRNA	26621211	26625850	.	-	.	ID=Os12t0623500-02;Name=Os12t0623500-02;Locus_id=Os12g0623500;Oryzabase Gene Symbol Synonym(s)=OsCAT11;Oryzabase Gene Name Synonym(s)=cationic amino acid transporter 11;Note=Similar to Cationic amino acid transporter-like protein.;Transcript_evidence=AK059703 (DDBJ%2C Best hit);ORF_evidence=B6U1T8 (UniProt);GO=Biological Process: amino acid transmembrane transport (GO:0003333),Biological Process: transport (GO:0006810),Biological Process: transmembrane transport (GO:0055085),Cellular Component: membrane (GO:0016020),Molecular Function: amino acid transmembrane transporter activity (GO:0015171);InterPro=Amino acid/polyamine transporter I (IPR002293),Amino acid permease domain (IPR004841),Cationic amino acid transporter (IPR015606);NIAS_FLcDNA=001-032-D03;Oryzabase=18545;TENOR=Os12t0623500-02
Chr12	irgsp1_rep	CDS	26625721	26625850	.	-	0	Parent=Os12t0623500-02
Chr12	irgsp1_rep	CDS	26624734	26624935	.	-	2	Parent=Os12t0623500-02
Chr12	irgsp1_rep	CDS	26624547	26624631	.	-	1	Parent=Os12t0623500-02
Chr12	irgsp1_rep	CDS	26624307	26624447	.	-	0	Parent=Os12t0623500-02
Chr12	irgsp1_rep	CDS	26624097	26624215	.	-	0	Parent=Os12t0623500-02
Chr12	irgsp1_rep	CDS	26623919	26624015	.	-	1	Parent=Os12t0623500-02
Chr12	irgsp1_rep	CDS	26623652	26623824	.	-	0	Parent=Os12t0623500-02
Chr12	irgsp1_rep	CDS	26623498	26623564	.	-	1	Parent=Os12t0623500-02
Chr12	irgsp1_rep	CDS	26622862	26623020	.	-	0	Parent=Os12t0623500-02
Chr12	irgsp1_rep	CDS	26622448	26622682	.	-	0	Parent=Os12t0623500-02
Chr12	irgsp1_rep	CDS	26622255	26622360	.	-	2	Parent=Os12t0623500-02
Chr12	irgsp1_rep	CDS	26622050	26622162	.	-	1	Parent=Os12t0623500-02
Chr12	irgsp1_rep	CDS	26621876	26621951	.	-	2	Parent=Os12t0623500-02
Chr12	irgsp1_rep	CDS	26621617	26621779	.	-	1	Parent=Os12t0623500-02
Chr12	irgsp1_rep	three_prime_UTR	26621211	26621616	.	-	.	Parent=Os12t0623500-02
Chr12	irgsp1_rep	mRNA	26629926	26632504	.	-	.	ID=Os12t0623600-01;Name=Os12t0623600-01;Locus_id=Os12g0623600;Note=Protein of unknown function DUF1637 family protein.;Transcript_evidence=AK099628 (DDBJ%2C Best hit);ORF_evidence=B6TB90 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: cysteamine dioxygenase activity (GO:0047800);InterPro=Cupin%2C RmlC-type (IPR011051),Cysteamine dioxygenase (IPR012864),RmlC-like jelly roll fold (IPR014710);NIAS_FLcDNA=J013055O18;Expression=AK099628;TENOR=Os12t0623600-01;KEGG=Os12t0623600-01
Chr12	irgsp1_rep	five_prime_UTR	26632417	26632504	.	-	.	Parent=Os12t0623600-01
Chr12	irgsp1_rep	CDS	26632149	26632416	.	-	0	Parent=Os12t0623600-01
Chr12	irgsp1_rep	CDS	26631643	26631764	.	-	2	Parent=Os12t0623600-01
Chr12	irgsp1_rep	CDS	26631361	26631523	.	-	0	Parent=Os12t0623600-01
Chr12	irgsp1_rep	CDS	26631060	26631263	.	-	2	Parent=Os12t0623600-01
Chr12	irgsp1_rep	CDS	26630412	26630551	.	-	2	Parent=Os12t0623600-01
Chr12	irgsp1_rep	three_prime_UTR	26629926	26630411	.	-	.	Parent=Os12t0623600-01
Chr12	irgsp1_rep	mRNA	26635697	26637314	.	-	.	ID=Os12t0623800-01;Name=Os12t0623800-01;Locus_id=Os12g0623800;Note=Similar to GLA1.;Transcript_evidence=AK063876 (DDBJ%2C Best hit);ORF_evidence=B6U2J2 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Biological Process: folic acid-containing compound biosynthetic process (GO:0009396),Molecular Function: tetrahydrofolylpolyglutamate synthase activity (GO:0004326),Molecular Function: ATP binding (GO:0005524),Molecular Function: ligase activity (GO:0016874);InterPro=Folylpolyglutamate synthetase (IPR001645),Mur ligase%2C C-terminal (IPR004101),Mur ligase%2C central (IPR013221);NIAS_FLcDNA=001-122-F03;TENOR=Os12t0623800-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	26637313	26637314	.	-	.	Parent=Os12t0623800-01
Chr12	irgsp1_rep	CDS	26637216	26637312	.	-	0	Parent=Os12t0623800-01
Chr12	irgsp1_rep	CDS	26636748	26636882	.	-	2	Parent=Os12t0623800-01
Chr12	irgsp1_rep	CDS	26636536	26636669	.	-	2	Parent=Os12t0623800-01
Chr12	irgsp1_rep	CDS	26635934	26636299	.	-	0	Parent=Os12t0623800-01
Chr12	irgsp1_rep	three_prime_UTR	26635697	26635933	.	-	.	Parent=Os12t0623800-01
Chr12	irgsp1_rep	mRNA	26645025	26651050	.	+	.	ID=Os12t0623900-01;Name=Os12t0623900-01;Locus_id=Os12g0623900;Note=Similar to Ethylene-responsive methionine synthase (Fragment).;Transcript_evidence=AK099069 (DDBJ%2C Best hit),AK065255 (DDBJ%2C Best hit);ORF_evidence=Q8W529 (UniProt);GO=Biological Process: cellular amino acid biosynthetic process (GO:0008652),Biological Process: methionine biosynthetic process (GO:0009086),Molecular Function: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity (GO:0003871),Molecular Function: zinc ion binding (GO:0008270);InterPro=Methionine synthase%2C vitamin-B12 independent (IPR002629),Cobalamin-independent methionine synthase (IPR006276),Cobalamin (vitamin B12)-independent methionine synthase MetE%2C N-terminal (IPR013215);NIAS_FLcDNA=J013163D13,J013002J12;Expression=AK099069;TENOR=Os12t0623900-01;KEGG=Os12t0623900-01 (EC:2.1.1.14)
Chr12	irgsp1_rep	five_prime_UTR	26645025	26645085	.	+	.	Parent=Os12t0623900-01
Chr12	irgsp1_rep	five_prime_UTR	26646689	26646692	.	+	.	Parent=Os12t0623900-01
Chr12	irgsp1_rep	CDS	26646693	26647042	.	+	0	Parent=Os12t0623900-01
Chr12	irgsp1_rep	CDS	26647140	26647227	.	+	1	Parent=Os12t0623900-01
Chr12	irgsp1_rep	CDS	26647925	26648052	.	+	0	Parent=Os12t0623900-01
Chr12	irgsp1_rep	CDS	26648130	26648321	.	+	1	Parent=Os12t0623900-01
Chr12	irgsp1_rep	CDS	26648426	26648628	.	+	1	Parent=Os12t0623900-01
Chr12	irgsp1_rep	CDS	26648743	26648906	.	+	2	Parent=Os12t0623900-01
Chr12	irgsp1_rep	CDS	26649044	26649124	.	+	0	Parent=Os12t0623900-01
Chr12	irgsp1_rep	CDS	26649217	26649383	.	+	0	Parent=Os12t0623900-01
Chr12	irgsp1_rep	CDS	26649462	26649567	.	+	1	Parent=Os12t0623900-01
Chr12	irgsp1_rep	CDS	26649716	26649966	.	+	0	Parent=Os12t0623900-01
Chr12	irgsp1_rep	CDS	26650057	26650129	.	+	1	Parent=Os12t0623900-01
Chr12	irgsp1_rep	CDS	26650198	26650326	.	+	0	Parent=Os12t0623900-01
Chr12	irgsp1_rep	CDS	26650410	26650778	.	+	0	Parent=Os12t0623900-01
Chr12	irgsp1_rep	three_prime_UTR	26650779	26651050	.	+	.	Parent=Os12t0623900-01
Chr12	irgsp1_rep	mRNA	26648130	26651101	.	+	.	ID=Os12t0623900-02;Name=Os12t0623900-02;Locus_id=Os12g0623900;Note=Similar to Methionine synthase protein.;Transcript_evidence=AK067958 (DDBJ%2C Best hit);ORF_evidence=Q8W0Q7 (UniProt);GO=Biological Process: cellular amino acid biosynthetic process (GO:0008652),Biological Process: methionine biosynthetic process (GO:0009086),Molecular Function: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity (GO:0003871),Molecular Function: zinc ion binding (GO:0008270);InterPro=Methionine synthase%2C vitamin-B12 independent (IPR002629),Cobalamin (vitamin B12)-independent methionine synthase MetE%2C N-terminal (IPR013215);NIAS_FLcDNA=J013128E22;Expression=AK067958;TENOR=Os12t0623900-02;KEGG=Os12t0623900-02 (EC:2.1.1.14)
Chr12	irgsp1_rep	five_prime_UTR	26648130	26648130	.	+	.	Parent=Os12t0623900-02
Chr12	irgsp1_rep	CDS	26648131	26648321	.	+	0	Parent=Os12t0623900-02
Chr12	irgsp1_rep	CDS	26648426	26648628	.	+	1	Parent=Os12t0623900-02
Chr12	irgsp1_rep	CDS	26648743	26648906	.	+	2	Parent=Os12t0623900-02
Chr12	irgsp1_rep	CDS	26649044	26649124	.	+	0	Parent=Os12t0623900-02
Chr12	irgsp1_rep	CDS	26649217	26649383	.	+	0	Parent=Os12t0623900-02
Chr12	irgsp1_rep	CDS	26649462	26649567	.	+	1	Parent=Os12t0623900-02
Chr12	irgsp1_rep	CDS	26649716	26649966	.	+	0	Parent=Os12t0623900-02
Chr12	irgsp1_rep	CDS	26650057	26650129	.	+	1	Parent=Os12t0623900-02
Chr12	irgsp1_rep	CDS	26650198	26650326	.	+	0	Parent=Os12t0623900-02
Chr12	irgsp1_rep	CDS	26650410	26650778	.	+	0	Parent=Os12t0623900-02
Chr12	irgsp1_rep	three_prime_UTR	26650779	26651101	.	+	.	Parent=Os12t0623900-02
Chr12	irgsp1_rep	mRNA	26649758	26651050	.	+	.	ID=Os12t0623900-03;Name=Os12t0623900-03;Locus_id=Os12g0623900;Note=Similar to Methionine synthase 2 enzyme.;Transcript_evidence=AK062198 (DDBJ%2C Best hit);ORF_evidence=Q4LB12 (UniProt);GO=Biological Process: methionine biosynthetic process (GO:0009086),Molecular Function: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity (GO:0003871);InterPro=Methionine synthase%2C vitamin-B12 independent (IPR002629);NIAS_FLcDNA=001-046-G02;Expression=AK062198;TENOR=Os12t0623900-03;KEGG=Os12t0623900-03 (EC:2.1.1.14)
Chr12	irgsp1_rep	CDS	26649758	26649966	.	+	0	Parent=Os12t0623900-03
Chr12	irgsp1_rep	CDS	26650057	26650129	.	+	1	Parent=Os12t0623900-03
Chr12	irgsp1_rep	CDS	26650198	26650326	.	+	0	Parent=Os12t0623900-03
Chr12	irgsp1_rep	CDS	26650410	26650778	.	+	0	Parent=Os12t0623900-03
Chr12	irgsp1_rep	three_prime_UTR	26650779	26651050	.	+	.	Parent=Os12t0623900-03
Chr12	irgsp1_rep	mRNA	26646688	26649384	.	-	.	ID=Os12t0623950-00;Name=Os12t0623950-00;Locus_id=Os12g0623950;Note=Hypothetical protein.;Transcript_evidence=AK369194 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0623950-00
Chr12	irgsp1_rep	five_prime_UTR	26649384	26649384	.	-	.	Parent=Os12t0623950-00
Chr12	irgsp1_rep	CDS	26649217	26649383	.	-	0	Parent=Os12t0623950-00
Chr12	irgsp1_rep	CDS	26649070	26649124	.	-	1	Parent=Os12t0623950-00
Chr12	irgsp1_rep	three_prime_UTR	26649050	26649069	.	-	.	Parent=Os12t0623950-00
Chr12	irgsp1_rep	three_prime_UTR	26648728	26648914	.	-	.	Parent=Os12t0623950-00
Chr12	irgsp1_rep	three_prime_UTR	26648435	26648613	.	-	.	Parent=Os12t0623950-00
Chr12	irgsp1_rep	three_prime_UTR	26648130	26648334	.	-	.	Parent=Os12t0623950-00
Chr12	irgsp1_rep	three_prime_UTR	26647937	26648052	.	-	.	Parent=Os12t0623950-00
Chr12	irgsp1_rep	three_prime_UTR	26647138	26647235	.	-	.	Parent=Os12t0623950-00
Chr12	irgsp1_rep	three_prime_UTR	26646688	26647039	.	-	.	Parent=Os12t0623950-00
Chr12	irgsp1_rep	mRNA	26657277	26662887	.	+	.	ID=Os12t0624000-01;Name=Os12t0624000-01;Locus_id=Os12g0624000;Oryzabase Gene Name Synonym(s)=Putative 5-methyltetrahydropteroyltriglutamate- homocysteine methyltransferase;Note=Similar to Methionine synthase protein.;Transcript_evidence=AK067757 (DDBJ%2C Best hit);ORF_evidence=Q8W529 (UniProt);GO=Biological Process: cellular amino acid biosynthetic process (GO:0008652),Biological Process: methionine biosynthetic process (GO:0009086),Molecular Function: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity (GO:0003871),Molecular Function: zinc ion binding (GO:0008270);InterPro=Methionine synthase%2C vitamin-B12 independent (IPR002629),Cobalamin-independent methionine synthase (IPR006276),Cobalamin (vitamin B12)-independent methionine synthase MetE%2C N-terminal (IPR013215);NIAS_FLcDNA=J013116H17;Oryzabase=21973;Expression=AK067757;TENOR=Os12t0624000-01;KEGG=Os12t0624000-01 (EC:2.1.1.14)
Chr12	irgsp1_rep	five_prime_UTR	26657277	26657338	.	+	.	Parent=Os12t0624000-01
Chr12	irgsp1_rep	five_prime_UTR	26658473	26658476	.	+	.	Parent=Os12t0624000-01
Chr12	irgsp1_rep	CDS	26658477	26658826	.	+	0	Parent=Os12t0624000-01
Chr12	irgsp1_rep	CDS	26658925	26659012	.	+	1	Parent=Os12t0624000-01
Chr12	irgsp1_rep	CDS	26659756	26659883	.	+	0	Parent=Os12t0624000-01
Chr12	irgsp1_rep	CDS	26659961	26660152	.	+	1	Parent=Os12t0624000-01
Chr12	irgsp1_rep	CDS	26660257	26660459	.	+	1	Parent=Os12t0624000-01
Chr12	irgsp1_rep	CDS	26660574	26660737	.	+	2	Parent=Os12t0624000-01
Chr12	irgsp1_rep	CDS	26660866	26660946	.	+	0	Parent=Os12t0624000-01
Chr12	irgsp1_rep	CDS	26661039	26661205	.	+	0	Parent=Os12t0624000-01
Chr12	irgsp1_rep	CDS	26661286	26661391	.	+	1	Parent=Os12t0624000-01
Chr12	irgsp1_rep	CDS	26661544	26661794	.	+	0	Parent=Os12t0624000-01
Chr12	irgsp1_rep	CDS	26661883	26661955	.	+	1	Parent=Os12t0624000-01
Chr12	irgsp1_rep	CDS	26662041	26662169	.	+	0	Parent=Os12t0624000-01
Chr12	irgsp1_rep	CDS	26662260	26662628	.	+	0	Parent=Os12t0624000-01
Chr12	irgsp1_rep	three_prime_UTR	26662629	26662887	.	+	.	Parent=Os12t0624000-01
Chr12	irgsp1_rep	mRNA	26658185	26662924	.	+	.	ID=Os12t0624000-02;Name=Os12t0624000-02;Locus_id=Os12g0624000;Oryzabase Gene Name Synonym(s)=Putative 5-methyltetrahydropteroyltriglutamate- homocysteine methyltransferase;Note=Similar to Methionine synthase protein.;Transcript_evidence=AK067726 (DDBJ%2C Best hit);ORF_evidence=Q8W529 (UniProt);GO=Biological Process: cellular amino acid biosynthetic process (GO:0008652),Biological Process: methionine biosynthetic process (GO:0009086),Molecular Function: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity (GO:0003871),Molecular Function: zinc ion binding (GO:0008270);InterPro=Methionine synthase%2C vitamin-B12 independent (IPR002629),Cobalamin-independent methionine synthase (IPR006276),Cobalamin (vitamin B12)-independent methionine synthase MetE%2C N-terminal (IPR013215);NIAS_FLcDNA=J013116O11;Oryzabase=21973;Expression=AK067726;TENOR=Os12t0624000-02;KEGG=Os12t0624000-02 (EC:2.1.1.14)
Chr12	irgsp1_rep	five_prime_UTR	26658185	26658365	.	+	.	Parent=Os12t0624000-02
Chr12	irgsp1_rep	five_prime_UTR	26658473	26658476	.	+	.	Parent=Os12t0624000-02
Chr12	irgsp1_rep	CDS	26658477	26658826	.	+	0	Parent=Os12t0624000-02
Chr12	irgsp1_rep	CDS	26658925	26659012	.	+	1	Parent=Os12t0624000-02
Chr12	irgsp1_rep	CDS	26659756	26659883	.	+	0	Parent=Os12t0624000-02
Chr12	irgsp1_rep	CDS	26659961	26660152	.	+	1	Parent=Os12t0624000-02
Chr12	irgsp1_rep	CDS	26660257	26660459	.	+	1	Parent=Os12t0624000-02
Chr12	irgsp1_rep	CDS	26660574	26660737	.	+	2	Parent=Os12t0624000-02
Chr12	irgsp1_rep	CDS	26660866	26660946	.	+	0	Parent=Os12t0624000-02
Chr12	irgsp1_rep	CDS	26661039	26661205	.	+	0	Parent=Os12t0624000-02
Chr12	irgsp1_rep	CDS	26661286	26661391	.	+	1	Parent=Os12t0624000-02
Chr12	irgsp1_rep	CDS	26661544	26661794	.	+	0	Parent=Os12t0624000-02
Chr12	irgsp1_rep	CDS	26661883	26661955	.	+	1	Parent=Os12t0624000-02
Chr12	irgsp1_rep	CDS	26662041	26662169	.	+	0	Parent=Os12t0624000-02
Chr12	irgsp1_rep	CDS	26662260	26662628	.	+	0	Parent=Os12t0624000-02
Chr12	irgsp1_rep	three_prime_UTR	26662629	26662924	.	+	.	Parent=Os12t0624000-02
Chr12	irgsp1_rep	mRNA	26658472	26661206	.	-	.	ID=Os12t0624050-00;Name=Os12t0624050-00;Locus_id=Os12g0624050;Note=Hypothetical protein.;Transcript_evidence=AK369194 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0624050-00
Chr12	irgsp1_rep	five_prime_UTR	26661206	26661206	.	-	.	Parent=Os12t0624050-00
Chr12	irgsp1_rep	CDS	26661039	26661205	.	-	0	Parent=Os12t0624050-00
Chr12	irgsp1_rep	CDS	26660892	26660946	.	-	1	Parent=Os12t0624050-00
Chr12	irgsp1_rep	three_prime_UTR	26660872	26660891	.	-	.	Parent=Os12t0624050-00
Chr12	irgsp1_rep	three_prime_UTR	26660559	26660745	.	-	.	Parent=Os12t0624050-00
Chr12	irgsp1_rep	three_prime_UTR	26660266	26660444	.	-	.	Parent=Os12t0624050-00
Chr12	irgsp1_rep	three_prime_UTR	26659961	26660165	.	-	.	Parent=Os12t0624050-00
Chr12	irgsp1_rep	three_prime_UTR	26659755	26659883	.	-	.	Parent=Os12t0624050-00
Chr12	irgsp1_rep	three_prime_UTR	26658923	26659011	.	-	.	Parent=Os12t0624050-00
Chr12	irgsp1_rep	three_prime_UTR	26658472	26658823	.	-	.	Parent=Os12t0624050-00
Chr12	irgsp1_rep	mRNA	26663164	26664821	.	-	.	ID=Os12t0624100-01;Name=Os12t0624100-01;Locus_id=Os12g0624100;Note=Similar to Small heat shock-like protein.;Transcript_evidence=AK107389 (DDBJ%2C Best hit);ORF_evidence=Q8W0Q8 (UniProt);NIAS_FLcDNA=002-127-C10;TENOR=Os12t0624100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	26664722	26664821	.	-	.	Parent=Os12t0624100-01
Chr12	irgsp1_rep	CDS	26664640	26664721	.	-	0	Parent=Os12t0624100-01
Chr12	irgsp1_rep	CDS	26663316	26664475	.	-	2	Parent=Os12t0624100-01
Chr12	irgsp1_rep	three_prime_UTR	26663164	26663315	.	-	.	Parent=Os12t0624100-01
Chr12	irgsp1_rep	mRNA	26669155	26670534	.	+	.	ID=Os12t0624200-00;Name=Os12t0624200-00;Locus_id=Os12g0624200;CGSNL Gene Symbol=CCX4;CGSNL Gene Name=CATION/CA2+ EXCHANGER 4;Oryzabase Gene Symbol Synonym(s)=OsCCX4%2C OsNCX15%2C NCX15;Oryzabase Gene Name Synonym(s)=cation/Ca2+ exchanger 4%2C Na+/Ca2+ Exchanger 15%2C Sodium/calcium exchanger 15;Note=Similar to K-exchanger-like protein.;Transcript_evidence=CT836549 (DDBJ%2C Best hit);ORF_evidence=NP_001147600.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Sodium/calcium exchanger membrane region (IPR004837);Oryzabase=15459;TENOR=Os12t0624200-00
Chr12	irgsp1_rep	five_prime_UTR	26669155	26669192	.	+	.	Parent=Os12t0624200-00
Chr12	irgsp1_rep	CDS	26669193	26670534	.	+	0	Parent=Os12t0624200-00
Chr12	irgsp1_rep	mRNA	26669216	26670920	.	-	.	ID=Os12t0624300-00;Name=Os12t0624300-00;Locus_id=Os12g0624300;Note=Hypothetical protein.;Transcript_evidence=AK358096 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0624300-00
Chr12	irgsp1_rep	CDS	26670126	26670920	.	-	0	Parent=Os12t0624300-00
Chr12	irgsp1_rep	three_prime_UTR	26669216	26670125	.	-	.	Parent=Os12t0624300-00
Chr12	irgsp1_rep	mRNA	26672423	26673742	.	+	.	ID=Os12t0624400-01;Name=Os12t0624400-01;Locus_id=Os12g0624400;Note=Hypothetical conserved gene.;Transcript_evidence=AK288050 (DDBJ%2C Best hit);ORF_evidence=Q2QLY1 (UniProt);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);NIAS_FLcDNA=J075151E22;TENOR=Os12t0624400-01;KEGG=Os12t0624400-01
Chr12	irgsp1_rep	five_prime_UTR	26672423	26672423	.	+	.	Parent=Os12t0624400-01
Chr12	irgsp1_rep	CDS	26672424	26673024	.	+	0	Parent=Os12t0624400-01
Chr12	irgsp1_rep	CDS	26673125	26673624	.	+	2	Parent=Os12t0624400-01
Chr12	irgsp1_rep	three_prime_UTR	26673625	26673742	.	+	.	Parent=Os12t0624400-01
Chr12	irgsp1_rep	mRNA	26684734	26685828	.	+	.	ID=Os12t0624700-00;Name=Os12t0624700-00;Locus_id=Os12g0624700;Note=Protein of unknown function DUF1677%2C Oryza sativa domain containing protein.;Transcript_evidence=AK333723 (DDBJ);ORF_evidence=Q2QLX8 (UniProt);InterPro=Protein of unknown function DUF1677%2C Oryza sativa (IPR012871);TENOR=Os12t0624700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	26684734	26685819	.	+	0	Parent=Os12t0624700-00
Chr12	irgsp1_rep	three_prime_UTR	26685820	26685828	.	+	.	Parent=Os12t0624700-00
Chr12	irgsp1_rep	mRNA	26686792	26689332	.	-	.	ID=Os12t0624800-01;Name=Os12t0624800-01;Locus_id=Os12g0624800;CGSNL Gene Symbol=SINE2;CGSNL Gene Name=SUN DOMAIN-BINDING AND NE LOCALIZATION PROTEIN 2;Oryzabase Gene Symbol Synonym(s)=OsSINE2;Oryzabase Gene Name Synonym(s)=SUN domain-binding and NE localization protein2%2C SUN domain-binding and NE localization protein 2;Note=Conserved hypothetical protein.;Transcript_evidence=AK103828 (DDBJ%2C Best hit);ORF_evidence=A3CJL8 (UniProt);NIAS_FLcDNA=J033147N05;Oryzabase=23724;Expression=AK103828;TENOR=Os12t0624800-01;KEGG=Os12t0624800-01
Chr12	irgsp1_rep	five_prime_UTR	26689271	26689332	.	-	.	Parent=Os12t0624800-01
Chr12	irgsp1_rep	five_prime_UTR	26689055	26689071	.	-	.	Parent=Os12t0624800-01
Chr12	irgsp1_rep	CDS	26687780	26689054	.	-	0	Parent=Os12t0624800-01
Chr12	irgsp1_rep	CDS	26686984	26687472	.	-	0	Parent=Os12t0624800-01
Chr12	irgsp1_rep	three_prime_UTR	26686792	26686983	.	-	.	Parent=Os12t0624800-01
Chr12	irgsp1_rep	mRNA	26693520	26696511	.	+	.	ID=Os12t0624900-01;Name=Os12t0624900-01;Locus_id=Os12g0624900;CGSNL Gene Symbol=GATA25;CGSNL Gene Name=GATA TRANSCRIPTION FACTOR 25;Oryzabase Gene Symbol Synonym(s)=OsGATA25;Oryzabase Gene Name Synonym(s)=GATA transcription factor 25%2C GATA factor 25;Note=Similar to GATA transcription factor 2 (AtGATA-2).;Transcript_evidence=AK101421 (DDBJ%2C Best hit);ORF_evidence=NP_001149142.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: zinc ion binding (GO:0008270),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Zinc finger%2C GATA-type (IPR000679),Zinc finger%2C NHR/GATA-type (IPR013088);NIAS_FLcDNA=J033038C04;Oryzabase=20504;Expression=AK101421;TENOR=Os12t0624900-01;KEGG=Os12t0624900-01
Chr12	irgsp1_rep	five_prime_UTR	26693520	26693621	.	+	.	Parent=Os12t0624900-01
Chr12	irgsp1_rep	CDS	26693622	26693690	.	+	0	Parent=Os12t0624900-01
Chr12	irgsp1_rep	CDS	26695233	26696093	.	+	0	Parent=Os12t0624900-01
Chr12	irgsp1_rep	three_prime_UTR	26696094	26696511	.	+	.	Parent=Os12t0624900-01
Chr12	irgsp1_rep	mRNA	26698650	26703087	.	-	.	ID=Os12t0625000-01;Name=Os12t0625000-01;Locus_id=Os12g0625000;RAP-DB Gene Symbol Synonym(s)=OsOASTL-A2;RAP-DB Gene Name Synonym(s)=O-acetylserine(thiol) lyase A2;CGSNL Gene Symbol=RCS1;CGSNL Gene Name=CYSTEINE SYNTHASE 1;Oryzabase Gene Symbol Synonym(s)=rcs1%2C OsOASTL-A2%2C OASTL-A2;Oryzabase Gene Name Synonym(s)=rice cysteine synthase (sulfer%2C nitrogen and light response)-1%2C rice cysteine synthase-1%2C O-acetylserine(thiol) lyase A2;Note=O-acetylserine(thiol) lyase%2C Cysteine synthase;Transcript_evidence=AK061993,AK099598;ORF_evidence=Q9XEA6;GO=Biological Process: cysteine biosynthetic process from serine (GO:0006535),Molecular Function: cysteine synthase activity (GO:0004124);InterPro=Tryptophan synthase beta subunit-like PLP-dependent enzyme (IPR036052),Cysteine synthase (IPR005856),Cysteine synthase CysK (IPR005859),Pyridoxal-phosphate dependent enzyme (IPR001926),Cysteine synthase/cystathionine beta-synthase%2C pyridoxal-phosphate attachment site (IPR001216);NIAS_FLcDNA=001-043-C03,J013045K17;Manual Curation=March 6%2C 2020;Literature_PMID=32129444;Oryzabase=6797;TENOR=Os12t0625000-01;B5toI1=Exon-intron structuresare different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	26703025	26703087	.	-	.	Parent=Os12t0625000-01
Chr12	irgsp1_rep	five_prime_UTR	26702865	26702879	.	-	.	Parent=Os12t0625000-01
Chr12	irgsp1_rep	CDS	26702832	26702864	.	-	0	Parent=Os12t0625000-01
Chr12	irgsp1_rep	CDS	26702600	26702709	.	-	0	Parent=Os12t0625000-01
Chr12	irgsp1_rep	CDS	26702342	26702399	.	-	1	Parent=Os12t0625000-01
Chr12	irgsp1_rep	CDS	26700650	26700913	.	-	0	Parent=Os12t0625000-01
Chr12	irgsp1_rep	CDS	26700434	26700571	.	-	0	Parent=Os12t0625000-01
Chr12	irgsp1_rep	CDS	26700262	26700313	.	-	0	Parent=Os12t0625000-01
Chr12	irgsp1_rep	CDS	26699819	26699898	.	-	2	Parent=Os12t0625000-01
Chr12	irgsp1_rep	CDS	26699551	26699610	.	-	0	Parent=Os12t0625000-01
Chr12	irgsp1_rep	CDS	26699330	26699410	.	-	0	Parent=Os12t0625000-01
Chr12	irgsp1_rep	CDS	26698886	26698975	.	-	0	Parent=Os12t0625000-01
Chr12	irgsp1_rep	three_prime_UTR	26698650	26698885	.	-	.	Parent=Os12t0625000-01
Chr12	irgsp1_rep	mRNA	26700639	26702684	.	+	.	ID=Os12t0625102-00;Name=Os12t0625102-00;Locus_id=Os12g0625102;Note=Non-protein coding transcript.;Transcript_evidence=AJ622893 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0625102-00
Chr12	irgsp1_rep	exon	26700639	26700963	.	+	.	Parent=Os12t0625102-00
Chr12	irgsp1_rep	exon	26702589	26702684	.	+	.	Parent=Os12t0625102-00
Chr12	irgsp1_rep	mRNA	26715468	26718161	.	-	.	ID=Os12t0625200-01;Name=Os12t0625200-01;Locus_id=Os12g0625200;Note=Hypothetical conserved gene.;Transcript_evidence=AK119479 (DDBJ%2C Best hit);ORF_evidence=Q6ATF7 (UniProt);NIAS_FLcDNA=001-134-B11;Expression=AK119479;TENOR=Os12t0625200-01;KEGG=Os12t0625200-01
Chr12	irgsp1_rep	five_prime_UTR	26717813	26718161	.	-	.	Parent=Os12t0625200-01
Chr12	irgsp1_rep	five_prime_UTR	26717360	26717458	.	-	.	Parent=Os12t0625200-01
Chr12	irgsp1_rep	five_prime_UTR	26717016	26717180	.	-	.	Parent=Os12t0625200-01
Chr12	irgsp1_rep	five_prime_UTR	26716377	26716595	.	-	.	Parent=Os12t0625200-01
Chr12	irgsp1_rep	five_prime_UTR	26716256	26716291	.	-	.	Parent=Os12t0625200-01
Chr12	irgsp1_rep	five_prime_UTR	26716029	26716160	.	-	.	Parent=Os12t0625200-01
Chr12	irgsp1_rep	CDS	26716016	26716028	.	-	0	Parent=Os12t0625200-01
Chr12	irgsp1_rep	CDS	26715468	26715925	.	-	2	Parent=Os12t0625200-01
Chr12	irgsp1_rep	mRNA	26714545	26718145	.	-	.	ID=Os12t0625200-02;Name=Os12t0625200-02;Locus_id=Os12g0625200;Note=Conserved hypothetical protein.;Transcript_evidence=AK103186 (DDBJ%2C Best hit);ORF_evidence=D8L851 (UniProt);NIAS_FLcDNA=J033121L20;TENOR=Os12t0625200-02;B5toI1=Exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	26717813	26718145	.	-	.	Parent=Os12t0625200-02
Chr12	irgsp1_rep	five_prime_UTR	26717360	26717458	.	-	.	Parent=Os12t0625200-02
Chr12	irgsp1_rep	five_prime_UTR	26717016	26717180	.	-	.	Parent=Os12t0625200-02
Chr12	irgsp1_rep	five_prime_UTR	26716377	26716842	.	-	.	Parent=Os12t0625200-02
Chr12	irgsp1_rep	five_prime_UTR	26716256	26716291	.	-	.	Parent=Os12t0625200-02
Chr12	irgsp1_rep	five_prime_UTR	26716029	26716160	.	-	.	Parent=Os12t0625200-02
Chr12	irgsp1_rep	CDS	26716016	26716028	.	-	0	Parent=Os12t0625200-02
Chr12	irgsp1_rep	CDS	26714961	26715925	.	-	2	Parent=Os12t0625200-02
Chr12	irgsp1_rep	three_prime_UTR	26714545	26714960	.	-	.	Parent=Os12t0625200-02
Chr12	irgsp1_rep	mRNA	26757490	26759185	.	+	.	ID=Os12t0626000-01;Name=Os12t0626000-01;Locus_id=Os12g0626000;Note=Conserved hypothetical protein.;Transcript_evidence=AK109499 (DDBJ%2C Best hit);ORF_evidence=A2ZMY7 (UniProt);NIAS_FLcDNA=001-207-D06;Expression=AK109499;TENOR=Os12t0626000-01;KEGG=Os12t0626000-01
Chr12	irgsp1_rep	five_prime_UTR	26757490	26757597	.	+	.	Parent=Os12t0626000-01
Chr12	irgsp1_rep	CDS	26757598	26758111	.	+	0	Parent=Os12t0626000-01
Chr12	irgsp1_rep	CDS	26758351	26758470	.	+	2	Parent=Os12t0626000-01
Chr12	irgsp1_rep	CDS	26758748	26758854	.	+	2	Parent=Os12t0626000-01
Chr12	irgsp1_rep	three_prime_UTR	26758855	26759185	.	+	.	Parent=Os12t0626000-01
Chr12	irgsp1_rep	mRNA	26759757	26762339	.	-	.	ID=Os12t0626100-01;Name=Os12t0626100-01;Locus_id=Os12g0626100;Note=Similar to HEAT-like.;Transcript_evidence=AK059924 (DDBJ%2C Best hit);ORF_evidence=B6UH29 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=PBS lyase HEAT-like repeat (IPR004155),Armadillo-like helical (IPR011989),Armadillo-type fold (IPR016024);NIAS_FLcDNA=006-209-H09;TENOR=Os12t0626100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	26762283	26762339	.	-	.	Parent=Os12t0626100-01
Chr12	irgsp1_rep	CDS	26762075	26762282	.	-	0	Parent=Os12t0626100-01
Chr12	irgsp1_rep	CDS	26761368	26761501	.	-	2	Parent=Os12t0626100-01
Chr12	irgsp1_rep	CDS	26761048	26761278	.	-	0	Parent=Os12t0626100-01
Chr12	irgsp1_rep	CDS	26760827	26760961	.	-	0	Parent=Os12t0626100-01
Chr12	irgsp1_rep	CDS	26760258	26760384	.	-	0	Parent=Os12t0626100-01
Chr12	irgsp1_rep	CDS	26760044	26760162	.	-	2	Parent=Os12t0626100-01
Chr12	irgsp1_rep	CDS	26759900	26759941	.	-	0	Parent=Os12t0626100-01
Chr12	irgsp1_rep	three_prime_UTR	26759757	26759899	.	-	.	Parent=Os12t0626100-01
Chr12	irgsp1_rep	mRNA	26763811	26764359	.	+	.	ID=Os12t0626150-00;Name=Os12t0626150-00;Locus_id=Os12g0626150;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001177070.1 (RefSeq);TENOR=Os12t0626150-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	26763811	26763836	.	+	0	Parent=Os12t0626150-00
Chr12	irgsp1_rep	CDS	26763924	26764359	.	+	1	Parent=Os12t0626150-00
Chr12	irgsp1_rep	mRNA	26768220	26768893	.	+	.	ID=Os12t0626200-01;Name=Os12t0626200-01;Locus_id=Os12g0626200;CGSNL Gene Symbol=SAUR58;CGSNL Gene Name=SMALL AUXIN-UP RNA 58;Oryzabase Gene Symbol Synonym(s)=OsSAUR58;Oryzabase Gene Name Synonym(s)=Small auxin-up RNA 58;Note=Auxin responsive SAUR protein family protein.;Transcript_evidence=AK107886 (DDBJ%2C Best hit);ORF_evidence=A2ZMY9 (UniProt);InterPro=Auxin responsive SAUR protein (IPR003676);NIAS_FLcDNA=002-134-D12;Oryzabase=9183;TENOR=Os12t0626200-01;B5toI1=Exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	26768220	26768277	.	+	.	Parent=Os12t0626200-01
Chr12	irgsp1_rep	CDS	26768278	26768670	.	+	0	Parent=Os12t0626200-01
Chr12	irgsp1_rep	three_prime_UTR	26768671	26768893	.	+	.	Parent=Os12t0626200-01
Chr12	irgsp1_rep	mRNA	26770732	26779064	.	-	.	ID=Os12t0626300-01;Name=Os12t0626300-01;Locus_id=Os12g0626300;Oryzabase Gene Symbol Synonym(s)=APC5%2C OsAPC5;Oryzabase Gene Name Synonym(s)=ANAPHASE PROMOTING COMPLEX 5;Note=Similar to MRNA%2C complete cds%2C clone: RAFL24-07-B09.;Transcript_evidence=AK288630 (DDBJ%2C Best hit);ORF_evidence=Q8H1U4 (UniProt);GO=Molecular Function: binding (GO:0005488);InterPro=Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J090055C05;Oryzabase=20428;TENOR=Os12t0626300-01;KEGG=Os12t0626300-01
Chr12	irgsp1_rep	five_prime_UTR	26779020	26779064	.	-	.	Parent=Os12t0626300-01
Chr12	irgsp1_rep	CDS	26778792	26779019	.	-	0	Parent=Os12t0626300-01
Chr12	irgsp1_rep	CDS	26778290	26778449	.	-	0	Parent=Os12t0626300-01
Chr12	irgsp1_rep	CDS	26778065	26778180	.	-	2	Parent=Os12t0626300-01
Chr12	irgsp1_rep	CDS	26777723	26777966	.	-	0	Parent=Os12t0626300-01
Chr12	irgsp1_rep	CDS	26776879	26776978	.	-	2	Parent=Os12t0626300-01
Chr12	irgsp1_rep	CDS	26776694	26776772	.	-	1	Parent=Os12t0626300-01
Chr12	irgsp1_rep	CDS	26776505	26776590	.	-	0	Parent=Os12t0626300-01
Chr12	irgsp1_rep	CDS	26775757	26775889	.	-	1	Parent=Os12t0626300-01
Chr12	irgsp1_rep	CDS	26775612	26775644	.	-	0	Parent=Os12t0626300-01
Chr12	irgsp1_rep	CDS	26774582	26774836	.	-	0	Parent=Os12t0626300-01
Chr12	irgsp1_rep	CDS	26774116	26774193	.	-	0	Parent=Os12t0626300-01
Chr12	irgsp1_rep	CDS	26773737	26774011	.	-	0	Parent=Os12t0626300-01
Chr12	irgsp1_rep	CDS	26773315	26773374	.	-	1	Parent=Os12t0626300-01
Chr12	irgsp1_rep	CDS	26773163	26773230	.	-	1	Parent=Os12t0626300-01
Chr12	irgsp1_rep	CDS	26772961	26773066	.	-	2	Parent=Os12t0626300-01
Chr12	irgsp1_rep	CDS	26772729	26772870	.	-	1	Parent=Os12t0626300-01
Chr12	irgsp1_rep	CDS	26772142	26772240	.	-	0	Parent=Os12t0626300-01
Chr12	irgsp1_rep	CDS	26771791	26772055	.	-	0	Parent=Os12t0626300-01
Chr12	irgsp1_rep	CDS	26771465	26771532	.	-	2	Parent=Os12t0626300-01
Chr12	irgsp1_rep	CDS	26771220	26771375	.	-	0	Parent=Os12t0626300-01
Chr12	irgsp1_rep	three_prime_UTR	26770732	26771219	.	-	.	Parent=Os12t0626300-01
Chr12	irgsp1_rep	mRNA	26780492	26783584	.	-	.	ID=Os12t0626400-01;Name=Os12t0626400-01;Locus_id=Os12g0626400;CGSNL Gene Symbol=PSY2;CGSNL Gene Name=PHYTOENE SYNTHASE 2;Oryzabase Gene Symbol Synonym(s)=PSY2%2C OsPSY2;Oryzabase Gene Name Synonym(s)=phytoene synthase 2;Note=Similar to Phytoene synthase 1%2C chloroplast precursor (EC 2.5.1.-) (Fruit ripening specific protein pTOM5).;Transcript_evidence=AK063967 (DDBJ%2C Best hit);ORF_evidence=Q8W014 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: transferase activity (GO:0016740),Molecular Function: transferase activity%2C transferring alkyl or aryl (other than methyl) groups (GO:0016765);InterPro=Squalene/phytoene synthase (IPR002060),Terpenoid synthase (IPR008949),Squalene/phytoene synthase%2C conserved site (IPR019845);NIAS_FLcDNA=001-124-A11;Oryzabase=8087;Expression=AK063967;TENOR=Os12t0626400-01;KEGG=Os12t0626400-01 (EC:2.5.1.32)
Chr12	irgsp1_rep	five_prime_UTR	26783583	26783584	.	-	.	Parent=Os12t0626400-01
Chr12	irgsp1_rep	CDS	26783297	26783582	.	-	0	Parent=Os12t0626400-01
Chr12	irgsp1_rep	CDS	26782096	26782146	.	-	2	Parent=Os12t0626400-01
Chr12	irgsp1_rep	CDS	26781808	26781980	.	-	2	Parent=Os12t0626400-01
Chr12	irgsp1_rep	CDS	26781443	26781678	.	-	0	Parent=Os12t0626400-01
Chr12	irgsp1_rep	CDS	26780971	26781163	.	-	1	Parent=Os12t0626400-01
Chr12	irgsp1_rep	CDS	26780734	26780883	.	-	0	Parent=Os12t0626400-01
Chr12	irgsp1_rep	three_prime_UTR	26780492	26780733	.	-	.	Parent=Os12t0626400-01
Chr12	irgsp1_rep	mRNA	26780504	26783579	.	-	.	ID=Os12t0626400-02;Name=Os12t0626400-02;Locus_id=Os12g0626400;CGSNL Gene Symbol=PSY2;CGSNL Gene Name=PHYTOENE SYNTHASE 2;Oryzabase Gene Symbol Synonym(s)=PSY2%2C OsPSY2;Oryzabase Gene Name Synonym(s)=phytoene synthase 2;Note=Similar to Phytoene synthase 2 (Fragment).;Transcript_evidence=AK073290 (DDBJ%2C Best hit);ORF_evidence=Q6ED35 (UniProt);GO=Biological Process: biosynthetic process (GO:0009058),Molecular Function: transferase activity (GO:0016740),Molecular Function: transferase activity%2C transferring alkyl or aryl (other than methyl) groups (GO:0016765);InterPro=Squalene/phytoene synthase (IPR002060),Terpenoid synthase (IPR008949),Squalene/phytoene synthase%2C conserved site (IPR019845);NIAS_FLcDNA=J033025L21;Oryzabase=8087;Expression=AK073290;TENOR=Os12t0626400-02;KEGG=Os12t0626400-02 (EC:2.5.1.32)
Chr12	irgsp1_rep	five_prime_UTR	26783525	26783579	.	-	.	Parent=Os12t0626400-02
Chr12	irgsp1_rep	CDS	26783131	26783524	.	-	0	Parent=Os12t0626400-02
Chr12	irgsp1_rep	CDS	26782096	26782146	.	-	2	Parent=Os12t0626400-02
Chr12	irgsp1_rep	CDS	26781808	26781980	.	-	2	Parent=Os12t0626400-02
Chr12	irgsp1_rep	CDS	26781443	26781678	.	-	0	Parent=Os12t0626400-02
Chr12	irgsp1_rep	CDS	26780971	26781163	.	-	1	Parent=Os12t0626400-02
Chr12	irgsp1_rep	CDS	26780734	26780883	.	-	0	Parent=Os12t0626400-02
Chr12	irgsp1_rep	three_prime_UTR	26780504	26780733	.	-	.	Parent=Os12t0626400-02
Chr12	irgsp1_rep	mRNA	26780968	26783368	.	+	.	ID=Os12t0626450-00;Name=Os12t0626450-00;Locus_id=Os12g0626450;Note=Hypothetical protein.;Transcript_evidence=tplb0026f23 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0626450-00
Chr12	irgsp1_rep	five_prime_UTR	26780968	26781055	.	+	.	Parent=Os12t0626450-00
Chr12	irgsp1_rep	CDS	26781056	26781141	.	+	0	Parent=Os12t0626450-00
Chr12	irgsp1_rep	CDS	26781424	26781592	.	+	1	Parent=Os12t0626450-00
Chr12	irgsp1_rep	three_prime_UTR	26781593	26781666	.	+	.	Parent=Os12t0626450-00
Chr12	irgsp1_rep	three_prime_UTR	26781790	26782032	.	+	.	Parent=Os12t0626450-00
Chr12	irgsp1_rep	three_prime_UTR	26783135	26783368	.	+	.	Parent=Os12t0626450-00
Chr12	irgsp1_rep	mRNA	26793127	26793851	.	+	.	ID=Os12t0626500-00;Name=Os12t0626500-00;Locus_id=Os12g0626500;Oryzabase Gene Symbol Synonym(s)=LEA D-34;Oryzabase Gene Name Synonym(s)=late embryogenesis abundant protein D-34;Note=Similar to late embryogenesis abundant protein D-34.;Transcript_evidence=EU954389 (DDBJ);ORF_evidence=NP_001147273.1 (RefSeq);InterPro=Seed maturation protein (IPR007011);Oryzabase=21713;TENOR=Os12t0626500-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	26793127	26793789	.	+	0	Parent=Os12t0626500-00
Chr12	irgsp1_rep	three_prime_UTR	26793790	26793851	.	+	.	Parent=Os12t0626500-00
Chr12	irgsp1_rep	mRNA	26888810	26890166	.	-	.	ID=Os12t0628100-01;Name=Os12t0628100-01;Locus_id=Os12g0628100;CGSNL Gene Symbol=ADF11;CGSNL Gene Name=ACTIN DEPOLYMERIZING FACTOR 11;Oryzabase Gene Symbol Synonym(s)=OsADF11;Oryzabase Gene Name Synonym(s)=actin depolymerizing factor 11;Note=Similar to Actin-depolymerizing factor 6 (ADF-6) (AtADF6).;Transcript_evidence=AK121150 (DDBJ%2C Best hit);ORF_evidence=Q2QLT8 (UniProt);GO=Cellular Component: intracellular (GO:0005622),Molecular Function: actin binding (GO:0003779);InterPro=Actin-binding%2C cofilin/tropomyosin type (IPR002108);NIAS_FLcDNA=J023078I07;Oryzabase=12510;Expression=AK121150;TENOR=Os12t0628100-01;KEGG=Os12t0628100-01
Chr12	irgsp1_rep	five_prime_UTR	26890111	26890166	.	-	.	Parent=Os12t0628100-01
Chr12	irgsp1_rep	CDS	26890090	26890110	.	-	0	Parent=Os12t0628100-01
Chr12	irgsp1_rep	CDS	26889337	26889602	.	-	0	Parent=Os12t0628100-01
Chr12	irgsp1_rep	CDS	26889014	26889164	.	-	1	Parent=Os12t0628100-01
Chr12	irgsp1_rep	three_prime_UTR	26888810	26889013	.	-	.	Parent=Os12t0628100-01
Chr12	irgsp1_rep	mRNA	26895057	26896260	.	+	.	ID=Os12t0628300-01;Name=Os12t0628300-01;Locus_id=Os12g0628300;Note=Conserved hypothetical protein.;Transcript_evidence=AK102484 (DDBJ%2C Best hit);ORF_evidence=A2ZMZ8 (UniProt);NIAS_FLcDNA=J033094L24;Expression=AK102484;TENOR=Os12t0628300-01;KEGG=Os12t0628300-01
Chr12	irgsp1_rep	five_prime_UTR	26895057	26895128	.	+	.	Parent=Os12t0628300-01
Chr12	irgsp1_rep	CDS	26895129	26896115	.	+	0	Parent=Os12t0628300-01
Chr12	irgsp1_rep	three_prime_UTR	26896116	26896260	.	+	.	Parent=Os12t0628300-01
Chr12	irgsp1_rep	mRNA	26902158	26905922	.	+	.	ID=Os12t0628400-01;Name=Os12t0628400-01;Locus_id=Os12g0628400;RAP-DB Gene Symbol Synonym(s)=FAH1%2C Os-FAH1%2C OsFAH1;RAP-DB Gene Name Synonym(s)=FATTY ACID 2-HYDROXYLASE 1%2C fatty acid 2-hydroxylase 1;CGSNL Gene Symbol=FAH1;CGSNL Gene Name=FATTY ACID 2-HYDROXYLASE 1;Oryzabase Gene Symbol Synonym(s)=Os-FAH1%2C OsFAH1;Oryzabase Gene Name Synonym(s)=fatty acid 2-hydroxylase 1;Note=Fatty acid 2-hydroxylase%2C Resistance to rice blast fungus infection;Transcript_evidence=AK061110;ORF_evidence=Q0ILR7;GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: biosynthetic process (GO:0009058),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=ADC synthase (IPR005801),Fatty acid hydroxylase (IPR006694);NIAS_FLcDNA=006-207-D02;Manual Curation=September 21%2C 2016;Literature_PMID=27465023;Oryzabase=21331;Expression=AK061110;TENOR=Os12t0628400-01;KEGG=Os12t0628400-01
Chr12	irgsp1_rep	five_prime_UTR	26902158	26902310	.	+	.	Parent=Os12t0628400-01
Chr12	irgsp1_rep	five_prime_UTR	26904034	26904067	.	+	.	Parent=Os12t0628400-01
Chr12	irgsp1_rep	CDS	26904068	26904118	.	+	0	Parent=Os12t0628400-01
Chr12	irgsp1_rep	CDS	26904357	26904449	.	+	0	Parent=Os12t0628400-01
Chr12	irgsp1_rep	CDS	26904525	26904721	.	+	0	Parent=Os12t0628400-01
Chr12	irgsp1_rep	CDS	26904813	26904918	.	+	1	Parent=Os12t0628400-01
Chr12	irgsp1_rep	CDS	26905026	26905172	.	+	0	Parent=Os12t0628400-01
Chr12	irgsp1_rep	CDS	26905266	26905388	.	+	0	Parent=Os12t0628400-01
Chr12	irgsp1_rep	three_prime_UTR	26905389	26905922	.	+	.	Parent=Os12t0628400-01
Chr12	irgsp1_rep	mRNA	26902165	26905898	.	+	.	ID=Os12t0628400-02;Name=Os12t0628400-02;Locus_id=Os12g0628400;CGSNL Gene Symbol=FAH1;CGSNL Gene Name=FATTY ACID 2-HYDROXYLASE 1;Oryzabase Gene Symbol Synonym(s)=Os-FAH1%2C OsFAH1;Oryzabase Gene Name Synonym(s)=fatty acid 2-hydroxylase 1;Note=Fatty acid hydroxylase domain containing protein.;Transcript_evidence=AK069213 (DDBJ%2C Best hit);ORF_evidence=B9GEE4 (UniProt);GO=Biological Process: fatty acid biosynthetic process (GO:0006633),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Fatty acid hydroxylase (IPR006694);NIAS_FLcDNA=J023010G06;Oryzabase=21331;Expression=AK069213;TENOR=Os12t0628400-02;KEGG=Os12t0628400-02
Chr12	irgsp1_rep	five_prime_UTR	26902165	26902310	.	+	.	Parent=Os12t0628400-02
Chr12	irgsp1_rep	five_prime_UTR	26904050	26904067	.	+	.	Parent=Os12t0628400-02
Chr12	irgsp1_rep	CDS	26904068	26904118	.	+	0	Parent=Os12t0628400-02
Chr12	irgsp1_rep	CDS	26904357	26904449	.	+	0	Parent=Os12t0628400-02
Chr12	irgsp1_rep	CDS	26904525	26904721	.	+	0	Parent=Os12t0628400-02
Chr12	irgsp1_rep	CDS	26904813	26904918	.	+	1	Parent=Os12t0628400-02
Chr12	irgsp1_rep	CDS	26905026	26905172	.	+	0	Parent=Os12t0628400-02
Chr12	irgsp1_rep	CDS	26905266	26905388	.	+	0	Parent=Os12t0628400-02
Chr12	irgsp1_rep	three_prime_UTR	26905389	26905898	.	+	.	Parent=Os12t0628400-02
Chr12	irgsp1_rep	mRNA	26906313	26910025	.	+	.	ID=Os12t0628500-01;Name=Os12t0628500-01;Locus_id=Os12g0628500;Note=Similar to Methionine aminopeptidase.;Transcript_evidence=AK122063 (DDBJ%2C Best hit);ORF_evidence=B9GEE4 (UniProt);GO=Biological Process: proteolysis (GO:0006508),Biological Process: cellular process (GO:0009987),Molecular Function: aminopeptidase activity (GO:0004177),Molecular Function: metalloexopeptidase activity (GO:0008235);InterPro=Peptidase M24%2C structural domain (IPR000994),Peptidase M24%2C methionine aminopeptidase (IPR001714),Peptidase M24A%2C methionine aminopeptidase%2C subfamily 2 (IPR002468),Winged helix-turn-helix transcription repressor DNA-binding (IPR011991),Peptidase M24A%2C methionine aminopeptidase%2C subfamily 2%2C binding site (IPR018349);NIAS_FLcDNA=J033115K11;TENOR=Os12t0628500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	26906313	26906451	.	+	.	Parent=Os12t0628500-01
Chr12	irgsp1_rep	five_prime_UTR	26906721	26906742	.	+	.	Parent=Os12t0628500-01
Chr12	irgsp1_rep	CDS	26906743	26906823	.	+	0	Parent=Os12t0628500-01
Chr12	irgsp1_rep	CDS	26907155	26907293	.	+	0	Parent=Os12t0628500-01
Chr12	irgsp1_rep	CDS	26907421	26907457	.	+	2	Parent=Os12t0628500-01
Chr12	irgsp1_rep	CDS	26907539	26907646	.	+	1	Parent=Os12t0628500-01
Chr12	irgsp1_rep	CDS	26907878	26907977	.	+	1	Parent=Os12t0628500-01
Chr12	irgsp1_rep	CDS	26908082	26908227	.	+	0	Parent=Os12t0628500-01
Chr12	irgsp1_rep	CDS	26908306	26908397	.	+	1	Parent=Os12t0628500-01
Chr12	irgsp1_rep	CDS	26908530	26908624	.	+	2	Parent=Os12t0628500-01
Chr12	irgsp1_rep	CDS	26908879	26908975	.	+	0	Parent=Os12t0628500-01
Chr12	irgsp1_rep	CDS	26909067	26909210	.	+	2	Parent=Os12t0628500-01
Chr12	irgsp1_rep	CDS	26909356	26909573	.	+	2	Parent=Os12t0628500-01
Chr12	irgsp1_rep	CDS	26909657	26909767	.	+	0	Parent=Os12t0628500-01
Chr12	irgsp1_rep	three_prime_UTR	26909768	26910025	.	+	.	Parent=Os12t0628500-01
Chr12	irgsp1_rep	mRNA	26913087	26913851	.	-	.	ID=Os12t0628600-01;Name=Os12t0628600-01;Locus_id=Os12g0628600;CGSNL Gene Symbol=PR5;CGSNL Gene Name=PATHOGENESIS-RELATED GENE 5;Oryzabase Gene Symbol Synonym(s)=OsPR5%2C Pir2%2C PR-5%2C PR5-1;Oryzabase Gene Name Synonym(s)=pathogenesis-related gene 5%2C Pathogenesis-related protein class 5 gene;Note=Similar to Thaumatin-like pathogenesis-related protein 3 precursor.;Transcript_evidence=AK241419 (DDBJ%2C Best hit);ORF_evidence=B7SDH2 (UniProt);InterPro=Thaumatin%2C pathogenesis-related (IPR001938),Thaumatin%2C conserved site (IPR017949);NIAS_FLcDNA=J065161F07;Oryzabase=13005;TENOR=Os12t0628600-01;KEGG=Os12t0628600-01
Chr12	irgsp1_rep	five_prime_UTR	26913795	26913851	.	-	.	Parent=Os12t0628600-01
Chr12	irgsp1_rep	CDS	26913261	26913794	.	-	0	Parent=Os12t0628600-01
Chr12	irgsp1_rep	three_prime_UTR	26913087	26913260	.	-	.	Parent=Os12t0628600-01
Chr12	irgsp1_rep	mRNA	26922175	26922699	.	-	.	ID=Os12t0629300-00;Name=Os12t0629300-00;Locus_id=Os12g0629300;Note=Similar to Thaumatin-like protein.;Transcript_evidence=ab initio prediction;ORF_evidence=B7SDH2 (UniProt);InterPro=Thaumatin%2C pathogenesis-related (IPR001938),Thaumatin%2C conserved site (IPR017949);TENOR=Os12t0629300-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	26922175	26922699	.	-	0	Parent=Os12t0629300-00
Chr12	irgsp1_rep	mRNA	26932273	26933292	.	-	.	ID=Os12t0629600-00;Name=Os12t0629600-00;Locus_id=Os12g0629600;Note=Thaumatin-like protein.;Transcript_evidence=P31110 (UniProt);ORF_evidence=P31110 (UniProt);InterPro=Thaumatin%2C pathogenesis-related (IPR001938),Thaumatin%2C conserved site (IPR017949);TENOR=Os12t0629600-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	26933003	26933292	.	-	0	Parent=Os12t0629600-00
Chr12	irgsp1_rep	CDS	26932757	26932757	.	-	1	Parent=Os12t0629600-00
Chr12	irgsp1_rep	CDS	26932273	26932515	.	-	0	Parent=Os12t0629600-00
Chr12	irgsp1_rep	mRNA	26946904	26947698	.	-	.	ID=Os12t0629700-01;Name=Os12t0629700-01;Locus_id=Os12g0629700;Oryzabase Gene Name Synonym(s)=PR5/thaumatin;Note=Similar to Thaumatin-like protein precursor.;Transcript_evidence=AK099946 (DDBJ%2C Best hit);ORF_evidence=B7SDH2 (UniProt);InterPro=Thaumatin%2C pathogenesis-related (IPR001938),Thaumatin%2C conserved site (IPR017949);NIAS_FLcDNA=J013123C17;Oryzabase=19079;Expression=AK099946;TENOR=Os12t0629700-01;KEGG=Os12t0629700-01
Chr12	irgsp1_rep	five_prime_UTR	26947624	26947698	.	-	.	Parent=Os12t0629700-01
Chr12	irgsp1_rep	CDS	26947084	26947623	.	-	0	Parent=Os12t0629700-01
Chr12	irgsp1_rep	three_prime_UTR	26946904	26947083	.	-	.	Parent=Os12t0629700-01
Chr12	irgsp1_rep	mRNA	26956203	26956894	.	-	.	ID=Os12t0630100-01;Name=Os12t0630100-01;Locus_id=Os12g0630100;RAP-DB Gene Symbol Synonym(s)=TOND1;RAP-DB Gene Name Synonym(s)=Tolerance Of Nitrogen Deficiency 1%2C Thaumatin;CGSNL Gene Symbol=TOND1;CGSNL Gene Name=TOLERANCE OF NITROGEN DEFICIENCY 1;Oryzabase Gene Name Synonym(s)=Thaumatin%2C Tolerance Of Nitrogen Deficiency 1;Note=Thaumatin protein%2C Tolerance to nitrogen deficiency;Transcript_evidence=AK069182,Inferred from literature (Tequing);ORF_evidence=Q2QLS8;InterPro=Thaumatin (IPR001938),Thaumatin%2C conserved site (IPR017949);NIAS_FLcDNA=J023009L15;Manual Curation=February 6%2C 2015;Literature_PMID=25439309;Oryzabase=14717;TENOR=Os12t0630100-01;KEGG=Os12t0630100-01;Comment=Nipponbare: intolerant to N deficiency%2C 93-11: tolerant to N deficiency%2C 5 SNPs leads to the increase in N-deficiency tolerance.
Chr12	irgsp1_rep	five_prime_UTR	26956844	26956894	.	-	.	Parent=Os12t0630100-01
Chr12	irgsp1_rep	CDS	26956295	26956843	.	-	0	Parent=Os12t0630100-01
Chr12	irgsp1_rep	three_prime_UTR	26956203	26956294	.	-	.	Parent=Os12t0630100-01
Chr12	irgsp1_rep	mRNA	26960487	26961383	.	+	.	ID=Os12t0630200-01;Name=Os12t0630200-01;Locus_id=Os12g0630200;Note=Thaumatin%2C pathogenesis-related family protein.;Transcript_evidence=AK287683 (DDBJ%2C Best hit);ORF_evidence=Q946Y9 (UniProt);InterPro=Thaumatin%2C pathogenesis-related (IPR001938);NIAS_FLcDNA=J065124I10;TENOR=Os12t0630200-01;KEGG=Os12t0630200-01
Chr12	irgsp1_rep	five_prime_UTR	26960487	26960522	.	+	.	Parent=Os12t0630200-01
Chr12	irgsp1_rep	CDS	26960523	26961239	.	+	0	Parent=Os12t0630200-01
Chr12	irgsp1_rep	three_prime_UTR	26961240	26961383	.	+	.	Parent=Os12t0630200-01
Chr12	irgsp1_rep	mRNA	26980121	26981082	.	-	.	ID=Os12t0630500-01;Name=Os12t0630500-01;Locus_id=Os12g0630500;Note=Similar to Thaumatin-like protein.;Transcript_evidence=AK243287 (DDBJ%2C Best hit);ORF_evidence=Q5MBN2 (UniProt);InterPro=Thaumatin%2C pathogenesis-related (IPR001938),Thaumatin%2C conserved site (IPR017949);NIAS_FLcDNA=J100052G13;Oryzabase=22769;TENOR=Os12t0630500-01;KEGG=Os12t0630500-01
Chr12	irgsp1_rep	five_prime_UTR	26981040	26981082	.	-	.	Parent=Os12t0630500-01
Chr12	irgsp1_rep	CDS	26980263	26981039	.	-	0	Parent=Os12t0630500-01
Chr12	irgsp1_rep	three_prime_UTR	26980121	26980262	.	-	.	Parent=Os12t0630500-01
Chr12	irgsp1_rep	mRNA	26985401	26986264	.	+	.	ID=Os12t0630600-01;Name=Os12t0630600-01;Locus_id=Os12g0630600;Note=Carbohydrate/puine kinase%2C PfkB%2C conserved site containing protein.;Transcript_evidence=AK243154 (DDBJ%2C Best hit);ORF_evidence=NP_001067338.2 (RefSeq);NIAS_FLcDNA=J100033A04;TENOR=Os12t0630600-01;KEGG=Os12t0630600-01
Chr12	irgsp1_rep	five_prime_UTR	26985401	26985454	.	+	.	Parent=Os12t0630600-01
Chr12	irgsp1_rep	CDS	26985455	26985612	.	+	0	Parent=Os12t0630600-01
Chr12	irgsp1_rep	CDS	26985696	26986119	.	+	1	Parent=Os12t0630600-01
Chr12	irgsp1_rep	three_prime_UTR	26986120	26986264	.	+	.	Parent=Os12t0630600-01
Chr12	irgsp1_rep	mRNA	26997525	27001728	.	-	.	ID=Os12t0630700-01;Name=Os12t0630700-01;Locus_id=Os12g0630700;Note=Similar to NONA protein.;Transcript_evidence=AK067843 (DDBJ%2C Best hit);ORF_evidence=NP_199330.2 (RefSeq);InterPro=HAD-like domain (IPR023214);NIAS_FLcDNA=J013127F16;Expression=AK067843;TENOR=Os12t0630700-01;KEGG=Os12t0630700-01
Chr12	irgsp1_rep	five_prime_UTR	27001680	27001728	.	-	.	Parent=Os12t0630700-01
Chr12	irgsp1_rep	CDS	27001423	27001679	.	-	0	Parent=Os12t0630700-01
Chr12	irgsp1_rep	CDS	27000681	27000730	.	-	1	Parent=Os12t0630700-01
Chr12	irgsp1_rep	CDS	27000347	27000410	.	-	2	Parent=Os12t0630700-01
Chr12	irgsp1_rep	CDS	27000075	27000123	.	-	1	Parent=Os12t0630700-01
Chr12	irgsp1_rep	CDS	26999829	26999897	.	-	0	Parent=Os12t0630700-01
Chr12	irgsp1_rep	CDS	26999260	26999321	.	-	0	Parent=Os12t0630700-01
Chr12	irgsp1_rep	CDS	26998728	26998808	.	-	1	Parent=Os12t0630700-01
Chr12	irgsp1_rep	CDS	26998399	26998553	.	-	1	Parent=Os12t0630700-01
Chr12	irgsp1_rep	CDS	26998221	26998302	.	-	2	Parent=Os12t0630700-01
Chr12	irgsp1_rep	CDS	26997993	26998136	.	-	1	Parent=Os12t0630700-01
Chr12	irgsp1_rep	CDS	26997790	26997892	.	-	1	Parent=Os12t0630700-01
Chr12	irgsp1_rep	three_prime_UTR	26997525	26997789	.	-	.	Parent=Os12t0630700-01
Chr12	irgsp1_rep	mRNA	27003068	27005249	.	-	.	ID=Os12t0630750-00;Name=Os12t0630750-00;Locus_id=Os12g0630750;Note=Similar to cDNA clone:J023055K12%2C full insert sequence.;Transcript_evidence=AK063501 (DDBJ%2C Secondary hit);ORF_evidence=B7EI05 (UniProt);TENOR=Os12t0630750-00;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	27004584	27005249	.	-	.	Parent=Os12t0630750-00
Chr12	irgsp1_rep	five_prime_UTR	27003995	27004373	.	-	.	Parent=Os12t0630750-00
Chr12	irgsp1_rep	five_prime_UTR	27003390	27003534	.	-	.	Parent=Os12t0630750-00
Chr12	irgsp1_rep	CDS	27003189	27003389	.	-	0	Parent=Os12t0630750-00
Chr12	irgsp1_rep	three_prime_UTR	27003068	27003188	.	-	.	Parent=Os12t0630750-00
Chr12	irgsp1_rep	mRNA	27007607	27009616	.	-	.	ID=Os12t0630800-00;Name=Os12t0630800-00;Locus_id=Os12g0630800;CGSNL Gene Symbol=NAC140;CGSNL Gene Name=NAC DOMAIN-CONTAINING PROTEIN 140;Oryzabase Gene Symbol Synonym(s)=ONAC140;Oryzabase Gene Name Synonym(s)=NAC domain-containing protein 140;Note=Hypothetical conserved gene.;Transcript_evidence=BT055579 (DDBJ);ORF_evidence=Q2QLR9 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677);InterPro=No apical meristem (NAM) protein (IPR003441);Oryzabase=15899;TENOR=Os12t0630800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	27009371	27009616	.	-	0	Parent=Os12t0630800-00
Chr12	irgsp1_rep	CDS	27008428	27008658	.	-	0	Parent=Os12t0630800-00
Chr12	irgsp1_rep	three_prime_UTR	27008337	27008427	.	-	.	Parent=Os12t0630800-00
Chr12	irgsp1_rep	three_prime_UTR	27007607	27008104	.	-	.	Parent=Os12t0630800-00
Chr12	irgsp1_rep	mRNA	27018566	27018640	.	+	.	ID=Os12t0631025-00;Name=Os12t0631025-00;Locus_id=Os12g0631025;Note=Non-protein coding transcript.;Transcript_evidence=X06283 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0631025-00
Chr12	irgsp1_rep	exon	27018566	27018640	.	+	.	Parent=Os12t0631025-00
Chr12	irgsp1_rep	mRNA	27022013	27025146	.	+	.	ID=Os12t0631100-01;Name=Os12t0631100-01;Locus_id=Os12g0631100;RAP-DB Gene Symbol Synonym(s)=GLUP4%2C glup4(esp8)%2C esp8%2C glup4%2C OsRab5B2%2C Rab5a%2C OsRab5a%2C gpa1%2C GPA1/Rab5a;RAP-DB Gene Name Synonym(s)=GLUTELIN PRECURSOR 4%2C glutelin precursor4%2C glutelin precursor 4%2C glutelin precursor-4%2C small GTP-binding protein OsRab5B2%2C small GTP-binding protein OsRab5a%2C glutelin precursor mutant4%2C glutelin precursor accumulation 1;CGSNL Gene Symbol=GLUP4;CGSNL Gene Name=GLUTELIN PRECURSOR 4;Oryzabase Gene Symbol Synonym(s)=glup4(esp8)%2C esp8%2C glup4%2C OsRab5B2%2C Rab5a%2C OsRab5a%2C gpa1%2C GPA1/Rab5a%2C GPA%2C GLUP4/Rab5%2C GLUP4/Rab5a;Oryzabase Gene Name Synonym(s)=glutelin precursor4%2C glutelin precursor 4%2C glutelin precursor-4%2C small GTP-binding protein OsRab5B2%2C small GTP-binding protein OsRab5a%2C glutelin precursor mutant4%2C glutelin precursor accumulation 1;Note=Small GTPase%2C Storage protein trafficking;Transcript_evidence=AY029301 (Genbank),AJ292320 (Genbank),AK061116 (Genbank);ORF_evidence=Q94IR3 (UniProt),Q9FEV1 (UniProt),Q0ILQ6 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: intracellular protein transport (GO:0006886),Biological Process: nucleocytoplasmic transport (GO:0006913),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Cellular Component: membrane (GO:0016020),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Ran GTPase (IPR002041),Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C Ras type (IPR020849);NIAS_FLcDNA=006-207-E04;Manual Curation=December 16%2C 2010;Literature_PMID=21105928;Oryzabase=651;Expression=AK061116;TENOR=Os12t0631100-01;KEGG=Os12t0631100-01
Chr12	irgsp1_rep	five_prime_UTR	27022013	27022191	.	+	.	Parent=Os12t0631100-01
Chr12	irgsp1_rep	CDS	27022192	27022233	.	+	0	Parent=Os12t0631100-01
Chr12	irgsp1_rep	CDS	27022497	27022574	.	+	0	Parent=Os12t0631100-01
Chr12	irgsp1_rep	CDS	27022670	27022837	.	+	0	Parent=Os12t0631100-01
Chr12	irgsp1_rep	CDS	27023697	27023745	.	+	0	Parent=Os12t0631100-01
Chr12	irgsp1_rep	CDS	27023947	27024020	.	+	2	Parent=Os12t0631100-01
Chr12	irgsp1_rep	CDS	27024555	27024648	.	+	0	Parent=Os12t0631100-01
Chr12	irgsp1_rep	CDS	27024787	27024893	.	+	2	Parent=Os12t0631100-01
Chr12	irgsp1_rep	three_prime_UTR	27024894	27025146	.	+	.	Parent=Os12t0631100-01
Chr12	irgsp1_rep	mRNA	27022082	27025203	.	+	.	ID=Os12t0631100-02;Name=Os12t0631100-02;Locus_id=Os12g0631100;CGSNL Gene Symbol=GLUP4;CGSNL Gene Name=GLUTELIN PRECURSOR 4;Oryzabase Gene Symbol Synonym(s)=glup4(esp8)%2C esp8%2C glup4%2C OsRab5B2%2C Rab5a%2C OsRab5a%2C gpa1%2C GPA1/Rab5a%2C GPA%2C GLUP4/Rab5%2C GLUP4/Rab5a;Oryzabase Gene Name Synonym(s)=glutelin precursor4%2C glutelin precursor 4%2C glutelin precursor-4%2C small GTP-binding protein OsRab5B2%2C small GTP-binding protein OsRab5a%2C glutelin precursor mutant4%2C glutelin precursor accumulation 1;Note=Ras domain containing protein.;Transcript_evidence=AK066784 (DDBJ%2C Best hit);ORF_evidence=Q9FEV1 (UniProt);GO=Biological Process: GTP catabolic process (GO:0006184),Biological Process: intracellular protein transport (GO:0006886),Biological Process: nucleocytoplasmic transport (GO:0006913),Biological Process: signal transduction (GO:0007165),Biological Process: small GTPase mediated signal transduction (GO:0007264),Biological Process: protein transport (GO:0015031),Cellular Component: intracellular (GO:0005622),Cellular Component: membrane (GO:0016020),Molecular Function: GTPase activity (GO:0003924),Molecular Function: GTP binding (GO:0005525);InterPro=Small GTPase superfamily (IPR001806),Ran GTPase (IPR002041),Small GTPase superfamily%2C Rho type (IPR003578),Small GTPase superfamily%2C Rab type (IPR003579),Small GTP-binding protein domain (IPR005225),Small GTPase superfamily%2C Ras type (IPR020849);NIAS_FLcDNA=J013078I11;Oryzabase=651;Expression=AK066784;TENOR=Os12t0631100-02;KEGG=Os12t0631100-02
Chr12	irgsp1_rep	five_prime_UTR	27022082	27022191	.	+	.	Parent=Os12t0631100-02
Chr12	irgsp1_rep	CDS	27022192	27022233	.	+	0	Parent=Os12t0631100-02
Chr12	irgsp1_rep	CDS	27022497	27022574	.	+	0	Parent=Os12t0631100-02
Chr12	irgsp1_rep	CDS	27022670	27022837	.	+	0	Parent=Os12t0631100-02
Chr12	irgsp1_rep	CDS	27023697	27023745	.	+	0	Parent=Os12t0631100-02
Chr12	irgsp1_rep	CDS	27023947	27024020	.	+	2	Parent=Os12t0631100-02
Chr12	irgsp1_rep	CDS	27024555	27024648	.	+	0	Parent=Os12t0631100-02
Chr12	irgsp1_rep	CDS	27024787	27024893	.	+	2	Parent=Os12t0631100-02
Chr12	irgsp1_rep	three_prime_UTR	27024894	27025203	.	+	.	Parent=Os12t0631100-02
Chr12	irgsp1_rep	mRNA	27023667	27025114	.	-	.	ID=Os12t0631150-00;Name=Os12t0631150-00;Locus_id=Os12g0631150;Note=Non-protein coding transcript.;Transcript_evidence=tplb0055b17 (Wheat FLcDNA);ORF_evidence=NONE;TENOR=Os12t0631150-00
Chr12	irgsp1_rep	exon	27024439	27025114	.	-	.	Parent=Os12t0631150-00
Chr12	irgsp1_rep	exon	27023667	27024271	.	-	.	Parent=Os12t0631150-00
Chr12	irgsp1_rep	mRNA	27025315	27029985	.	-	.	ID=Os12t0631200-01;Name=Os12t0631200-01;Locus_id=Os12g0631200;Note=Zinc finger%2C C6HC-type domain containing protein.;Transcript_evidence=AK101710 (DDBJ%2C Best hit);ORF_evidence=B6SWC9 (UniProt);GO=Molecular Function: nucleic acid binding (GO:0003676),Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C CCHC-type (IPR001878),Zinc finger%2C C6HC-type (IPR002867),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907);NIAS_FLcDNA=J033060L17;Expression=AK101710;TENOR=Os12t0631200-01;KEGG=Os12t0631200-01
Chr12	irgsp1_rep	five_prime_UTR	27029701	27029985	.	-	.	Parent=Os12t0631200-01
Chr12	irgsp1_rep	five_prime_UTR	27028695	27029273	.	-	.	Parent=Os12t0631200-01
Chr12	irgsp1_rep	CDS	27028296	27028694	.	-	0	Parent=Os12t0631200-01
Chr12	irgsp1_rep	CDS	27026881	27027629	.	-	0	Parent=Os12t0631200-01
Chr12	irgsp1_rep	CDS	27025657	27026041	.	-	1	Parent=Os12t0631200-01
Chr12	irgsp1_rep	three_prime_UTR	27025315	27025656	.	-	.	Parent=Os12t0631200-01
Chr12	irgsp1_rep	mRNA	27025337	27027162	.	-	.	ID=Os12t0631200-02;Name=Os12t0631200-02;Locus_id=Os12g0631200;Note=Similar to ubiquitin-protein ligase/ zinc ion binding protein.;Transcript_evidence=AK060037 (DDBJ%2C Best hit),AK104365 (DDBJ%2C Best hit);ORF_evidence=B6SWC9 (UniProt);GO=Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C C6HC-type (IPR002867);NIAS_FLcDNA=006-304-A11,001-035-D02;Expression=AK060037;TENOR=Os12t0631200-02;KEGG=Os12t0631200-02
Chr12	irgsp1_rep	five_prime_UTR	27027162	27027162	.	-	.	Parent=Os12t0631200-02
Chr12	irgsp1_rep	CDS	27026881	27027161	.	-	0	Parent=Os12t0631200-02
Chr12	irgsp1_rep	CDS	27025657	27026041	.	-	1	Parent=Os12t0631200-02
Chr12	irgsp1_rep	three_prime_UTR	27025337	27025656	.	-	.	Parent=Os12t0631200-02
Chr12	irgsp1_rep	mRNA	27046194	27049741	.	+	.	ID=Os12t0631600-01;Name=Os12t0631600-01;Locus_id=Os12g0631600;Note=Conserved hypothetical protein.;Transcript_evidence=AK241940 (DDBJ%2C Best hit);ORF_evidence=Q2QLR4 (UniProt);NIAS_FLcDNA=J075087C06;TENOR=Os12t0631600-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	27046194	27046314	.	+	.	Parent=Os12t0631600-01
Chr12	irgsp1_rep	CDS	27046315	27047456	.	+	0	Parent=Os12t0631600-01
Chr12	irgsp1_rep	CDS	27048904	27049021	.	+	1	Parent=Os12t0631600-01
Chr12	irgsp1_rep	three_prime_UTR	27049022	27049036	.	+	.	Parent=Os12t0631600-01
Chr12	irgsp1_rep	three_prime_UTR	27049182	27049741	.	+	.	Parent=Os12t0631600-01
Chr12	irgsp1_rep	mRNA	27052087	27056972	.	-	.	ID=Os12t0631800-01;Name=Os12t0631800-01;Locus_id=Os12g0631800;Oryzabase Gene Symbol Synonym(s)=STS90;Oryzabase Gene Name Synonym(s)=Phytoene dehydrogenase;Note=Similar to predicted protein.;Transcript_evidence=AK067318 (DDBJ%2C Best hit);ORF_evidence=NP_568712.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FAD dependent oxidoreductase (IPR006076);NIAS_FLcDNA=J013104A19;Oryzabase=21632;Expression=AK067318;TENOR=Os12t0631800-01;KEGG=Os12t0631800-01
Chr12	irgsp1_rep	five_prime_UTR	27056893	27056972	.	-	.	Parent=Os12t0631800-01
Chr12	irgsp1_rep	CDS	27056576	27056892	.	-	0	Parent=Os12t0631800-01
Chr12	irgsp1_rep	CDS	27056248	27056409	.	-	1	Parent=Os12t0631800-01
Chr12	irgsp1_rep	CDS	27055882	27056064	.	-	1	Parent=Os12t0631800-01
Chr12	irgsp1_rep	CDS	27055711	27055768	.	-	1	Parent=Os12t0631800-01
Chr12	irgsp1_rep	CDS	27055518	27055568	.	-	0	Parent=Os12t0631800-01
Chr12	irgsp1_rep	CDS	27055351	27055433	.	-	0	Parent=Os12t0631800-01
Chr12	irgsp1_rep	CDS	27055243	27055276	.	-	1	Parent=Os12t0631800-01
Chr12	irgsp1_rep	three_prime_UTR	27054989	27055242	.	-	.	Parent=Os12t0631800-01
Chr12	irgsp1_rep	three_prime_UTR	27054699	27054743	.	-	.	Parent=Os12t0631800-01
Chr12	irgsp1_rep	three_prime_UTR	27054547	27054621	.	-	.	Parent=Os12t0631800-01
Chr12	irgsp1_rep	three_prime_UTR	27054370	27054438	.	-	.	Parent=Os12t0631800-01
Chr12	irgsp1_rep	three_prime_UTR	27054168	27054283	.	-	.	Parent=Os12t0631800-01
Chr12	irgsp1_rep	three_prime_UTR	27053437	27053549	.	-	.	Parent=Os12t0631800-01
Chr12	irgsp1_rep	three_prime_UTR	27053135	27053214	.	-	.	Parent=Os12t0631800-01
Chr12	irgsp1_rep	three_prime_UTR	27052797	27052917	.	-	.	Parent=Os12t0631800-01
Chr12	irgsp1_rep	three_prime_UTR	27052618	27052684	.	-	.	Parent=Os12t0631800-01
Chr12	irgsp1_rep	three_prime_UTR	27052087	27052506	.	-	.	Parent=Os12t0631800-01
Chr12	irgsp1_rep	mRNA	27051976	27056969	.	-	.	ID=Os12t0631800-02;Name=Os12t0631800-02;Locus_id=Os12g0631800;Oryzabase Gene Symbol Synonym(s)=STS90;Oryzabase Gene Name Synonym(s)=Phytoene dehydrogenase;Note=Phytoene dehydrogenase-like.;Transcript_evidence=AK063915 (DDBJ%2C Best hit);ORF_evidence=NP_568712.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FAD dependent oxidoreductase (IPR006076);NIAS_FLcDNA=001-123-B01;Oryzabase=21632;TENOR=Os12t0631800-02
Chr12	irgsp1_rep	five_prime_UTR	27056893	27056969	.	-	.	Parent=Os12t0631800-02
Chr12	irgsp1_rep	CDS	27056576	27056892	.	-	0	Parent=Os12t0631800-02
Chr12	irgsp1_rep	CDS	27056248	27056409	.	-	1	Parent=Os12t0631800-02
Chr12	irgsp1_rep	CDS	27055882	27056064	.	-	1	Parent=Os12t0631800-02
Chr12	irgsp1_rep	CDS	27055711	27055768	.	-	1	Parent=Os12t0631800-02
Chr12	irgsp1_rep	CDS	27055518	27055568	.	-	0	Parent=Os12t0631800-02
Chr12	irgsp1_rep	CDS	27055351	27055433	.	-	0	Parent=Os12t0631800-02
Chr12	irgsp1_rep	CDS	27054963	27055050	.	-	1	Parent=Os12t0631800-02
Chr12	irgsp1_rep	CDS	27054699	27054743	.	-	0	Parent=Os12t0631800-02
Chr12	irgsp1_rep	CDS	27054547	27054621	.	-	0	Parent=Os12t0631800-02
Chr12	irgsp1_rep	CDS	27054370	27054438	.	-	0	Parent=Os12t0631800-02
Chr12	irgsp1_rep	CDS	27054168	27054283	.	-	0	Parent=Os12t0631800-02
Chr12	irgsp1_rep	CDS	27053437	27053549	.	-	1	Parent=Os12t0631800-02
Chr12	irgsp1_rep	CDS	27053135	27053214	.	-	2	Parent=Os12t0631800-02
Chr12	irgsp1_rep	CDS	27052797	27052917	.	-	0	Parent=Os12t0631800-02
Chr12	irgsp1_rep	CDS	27052618	27052684	.	-	2	Parent=Os12t0631800-02
Chr12	irgsp1_rep	CDS	27052377	27052506	.	-	1	Parent=Os12t0631800-02
Chr12	irgsp1_rep	three_prime_UTR	27051976	27052376	.	-	.	Parent=Os12t0631800-02
Chr12	irgsp1_rep	mRNA	27051976	27056936	.	-	.	ID=Os12t0631800-03;Name=Os12t0631800-03;Locus_id=Os12g0631800;Oryzabase Gene Symbol Synonym(s)=STS90;Oryzabase Gene Name Synonym(s)=Phytoene dehydrogenase;Note=Phytoene dehydrogenase-like.;Transcript_evidence=AK103431 (DDBJ%2C Best hit);ORF_evidence=NP_568712.1 (RefSeq);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=FAD dependent oxidoreductase (IPR006076);NIAS_FLcDNA=J033128O13;Oryzabase=21632;TENOR=Os12t0631800-03
Chr12	irgsp1_rep	five_prime_UTR	27056893	27056936	.	-	.	Parent=Os12t0631800-03
Chr12	irgsp1_rep	CDS	27056576	27056892	.	-	0	Parent=Os12t0631800-03
Chr12	irgsp1_rep	CDS	27056248	27056409	.	-	1	Parent=Os12t0631800-03
Chr12	irgsp1_rep	CDS	27055882	27056064	.	-	1	Parent=Os12t0631800-03
Chr12	irgsp1_rep	CDS	27055711	27055768	.	-	1	Parent=Os12t0631800-03
Chr12	irgsp1_rep	CDS	27055518	27055568	.	-	0	Parent=Os12t0631800-03
Chr12	irgsp1_rep	CDS	27055351	27055433	.	-	0	Parent=Os12t0631800-03
Chr12	irgsp1_rep	CDS	27054963	27055050	.	-	1	Parent=Os12t0631800-03
Chr12	irgsp1_rep	CDS	27054699	27054743	.	-	0	Parent=Os12t0631800-03
Chr12	irgsp1_rep	CDS	27054547	27054621	.	-	0	Parent=Os12t0631800-03
Chr12	irgsp1_rep	CDS	27054370	27054438	.	-	0	Parent=Os12t0631800-03
Chr12	irgsp1_rep	CDS	27054168	27054283	.	-	0	Parent=Os12t0631800-03
Chr12	irgsp1_rep	CDS	27053437	27053549	.	-	1	Parent=Os12t0631800-03
Chr12	irgsp1_rep	CDS	27053135	27053214	.	-	2	Parent=Os12t0631800-03
Chr12	irgsp1_rep	CDS	27052797	27052917	.	-	0	Parent=Os12t0631800-03
Chr12	irgsp1_rep	CDS	27052618	27052684	.	-	2	Parent=Os12t0631800-03
Chr12	irgsp1_rep	CDS	27052377	27052506	.	-	1	Parent=Os12t0631800-03
Chr12	irgsp1_rep	three_prime_UTR	27051976	27052376	.	-	.	Parent=Os12t0631800-03
Chr12	irgsp1_rep	mRNA	27060232	27061159	.	+	.	ID=Os12t0632000-01;Name=Os12t0632000-01;Locus_id=Os12g0632000;RAP-DB Gene Symbol Synonym(s)=GRP162;RAP-DB Gene Name Synonym(s)=Glycine-Rich Protein GRP162%2C a Gly-rich protein encoding 162 amino acids%2C glycine-rich protein 162;Oryzabase Gene Symbol Synonym(s)=GRP162;Oryzabase Gene Name Synonym(s)=Glycine-Rich Protein GRP162%2C a Gly-rich protein encoding 162 amino acids%2C glycine-rich protein 162;Note=Gly-rich protein%2C Partner protein of RF5%2C Fertility restoration;Transcript_evidence=AK243636;ORF_evidence=Q2QLR2;GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: nucleic acid binding (GO:0003676);InterPro=Nucleotide-binding%2C alpha-beta plait (IPR012677),RNA recognition motif domain (IPR000504);NIAS_FLcDNA=J100087I01;Manual Curation=September 18%2C 2014;Literature_PMID=22247252;Oryzabase=10271;TENOR=Os12t0632000-01;KEGG=Os12t0632000-01
Chr12	irgsp1_rep	five_prime_UTR	27060232	27060339	.	+	.	Parent=Os12t0632000-01
Chr12	irgsp1_rep	CDS	27060340	27060453	.	+	0	Parent=Os12t0632000-01
Chr12	irgsp1_rep	CDS	27060567	27060941	.	+	0	Parent=Os12t0632000-01
Chr12	irgsp1_rep	three_prime_UTR	27060942	27061159	.	+	.	Parent=Os12t0632000-01
Chr12	irgsp1_rep	mRNA	27061650	27063765	.	-	.	ID=Os12t0632100-01;Name=Os12t0632100-01;Locus_id=Os12g0632100;Note=Similar to ARL2 G-protein.;Transcript_evidence=AK106567 (DDBJ%2C Best hit);ORF_evidence=XP_002461603.1 (RefSeq);NIAS_FLcDNA=002-110-G01;Expression=AK106567;TENOR=Os12t0632100-01;KEGG=Os12t0632100-01
Chr12	irgsp1_rep	five_prime_UTR	27063708	27063765	.	-	.	Parent=Os12t0632100-01
Chr12	irgsp1_rep	five_prime_UTR	27063434	27063552	.	-	.	Parent=Os12t0632100-01
Chr12	irgsp1_rep	five_prime_UTR	27063241	27063256	.	-	.	Parent=Os12t0632100-01
Chr12	irgsp1_rep	CDS	27063145	27063240	.	-	0	Parent=Os12t0632100-01
Chr12	irgsp1_rep	CDS	27062145	27062270	.	-	0	Parent=Os12t0632100-01
Chr12	irgsp1_rep	three_prime_UTR	27061650	27062144	.	-	.	Parent=Os12t0632100-01
Chr12	irgsp1_rep	mRNA	27074041	27077792	.	+	.	ID=Os12t0632401-00;Name=Os12t0632401-00;Locus_id=Os12g0632401;Note=Hypothetical conserved gene.;Transcript_evidence=AK102213 (DDBJ%2C Secondary hit);ORF_evidence=NP_001059784.1 (RefSeq);Expression=AK102213;TENOR=Os12t0632401-00;KEGG=Os12t0632401-00
Chr12	irgsp1_rep	five_prime_UTR	27074041	27074459	.	+	.	Parent=Os12t0632401-00
Chr12	irgsp1_rep	five_prime_UTR	27075659	27075724	.	+	.	Parent=Os12t0632401-00
Chr12	irgsp1_rep	CDS	27075725	27075886	.	+	0	Parent=Os12t0632401-00
Chr12	irgsp1_rep	three_prime_UTR	27075887	27077792	.	+	.	Parent=Os12t0632401-00
Chr12	irgsp1_rep	mRNA	27088697	27091800	.	+	.	ID=Os12t0632600-00;Name=Os12t0632600-00;Locus_id=Os12g0632600;Oryzabase Gene Symbol Synonym(s)=OsbHLH021;Oryzabase Gene Name Synonym(s)=basic helix-loop-helix protein 021;Note=Similar to Helix-loop-helix DNA-binding domain containing protein.;Transcript_evidence=BT064340 (DDBJ);ORF_evidence=Q2QLR0 (UniProt);InterPro=Helix-loop-helix DNA-binding (IPR011598);Oryzabase=15312;TENOR=Os12t0632600-00;KEGG=Os12t0632600-00
Chr12	irgsp1_rep	CDS	27088697	27089281	.	+	0	Parent=Os12t0632600-00
Chr12	irgsp1_rep	CDS	27089712	27090063	.	+	0	Parent=Os12t0632600-00
Chr12	irgsp1_rep	CDS	27091679	27091800	.	+	2	Parent=Os12t0632600-00
Chr12	irgsp1_rep	mRNA	27094649	27099336	.	-	.	ID=Os12t0632700-01;Name=Os12t0632700-01;Locus_id=Os12g0632700;Oryzabase Gene Name Synonym(s)=Glyoxysomal Malate Dehydrogenase%2C lactate/malate dehydrogenase 1;Note=Malate dehydrogenase%2C glyoxysomal precursor (EC 1.1.1.37).;Transcript_evidence=AK065955 (DDBJ%2C Best hit),AK061793 (DDBJ%2C Best hit);ORF_evidence=B8BN58 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Biological Process: malate metabolic process (GO:0006108),Biological Process: cellular carbohydrate metabolic process (GO:0044262),Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: oxidoreductase activity (GO:0016491),Molecular Function: malate dehydrogenase activity (GO:0016615),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C NAD or NADP as acceptor (GO:0016616),Molecular Function: L-malate dehydrogenase activity (GO:0030060);InterPro=Lactate/malate dehydrogenase%2C N-terminal (IPR001236),Malate dehydrogenase%2C active site (IPR001252),L-lactate/malate dehydrogenase (IPR001557),Malate dehydrogenase%2C type 1 (IPR010097),Lactate dehydrogenase/glycoside hydrolase%2C family 4%2C C-terminal (IPR015955),NAD(P)-binding domain (IPR016040),Lactate/malate dehydrogenase%2C C-terminal (IPR022383);NIAS_FLcDNA=J013045C09,001-039-F06;Oryzabase=15755;Expression=AK065955;TENOR=Os12t0632700-01;KEGG=Os12t0632700-01 (EC:1.1.1.37)
Chr12	irgsp1_rep	five_prime_UTR	27099272	27099336	.	-	.	Parent=Os12t0632700-01
Chr12	irgsp1_rep	CDS	27099200	27099271	.	-	0	Parent=Os12t0632700-01
Chr12	irgsp1_rep	CDS	27098047	27098262	.	-	0	Parent=Os12t0632700-01
Chr12	irgsp1_rep	CDS	27097173	27097487	.	-	0	Parent=Os12t0632700-01
Chr12	irgsp1_rep	CDS	27096985	27097074	.	-	0	Parent=Os12t0632700-01
Chr12	irgsp1_rep	CDS	27096748	27096831	.	-	0	Parent=Os12t0632700-01
Chr12	irgsp1_rep	CDS	27096074	27096109	.	-	0	Parent=Os12t0632700-01
Chr12	irgsp1_rep	CDS	27095895	27095984	.	-	0	Parent=Os12t0632700-01
Chr12	irgsp1_rep	CDS	27095708	27095802	.	-	0	Parent=Os12t0632700-01
Chr12	irgsp1_rep	CDS	27094979	27095051	.	-	1	Parent=Os12t0632700-01
Chr12	irgsp1_rep	three_prime_UTR	27094649	27094978	.	-	.	Parent=Os12t0632700-01
Chr12	irgsp1_rep	mRNA	27109127	27112150	.	+	.	ID=Os12t0632800-00;Name=Os12t0632800-00;Locus_id=Os12g0632800;Oryzabase Gene Symbol Synonym(s)=HAIKU2;Oryzabase Gene Name Synonym(s)=receptor-like protein kinase HAIKU2;Note=Protein kinase%2C catalytic domain domain containing protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001067347.2 (RefSeq);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Leucine-rich repeat%2C typical subtype (IPR003591),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441);Oryzabase=15677;TENOR=Os12t0632800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	27109127	27111468	.	+	0	Parent=Os12t0632800-00
Chr12	irgsp1_rep	CDS	27111901	27112150	.	+	1	Parent=Os12t0632800-00
Chr12	irgsp1_rep	mRNA	27118220	27120840	.	-	.	ID=Os12t0632850-01;Name=Os12t0632850-01;Locus_id=Os12g0632850;Note=Non-protein coding transcript.;Transcript_evidence=AK288243 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090014A15;TENOR=Os12t0632850-01
Chr12	irgsp1_rep	exon	27118220	27120840	.	-	.	Parent=Os12t0632850-01
Chr12	irgsp1_rep	mRNA	27122488	27126252	.	+	.	ID=Os12t0632900-01;Name=Os12t0632900-01;Locus_id=Os12g0632900;Note=Serine/threonine protein kinase-related domain containing protein.;Transcript_evidence=AK071957 (DDBJ%2C Best hit);ORF_evidence=Q9FGL5 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J013082M02;Expression=AK071957;TENOR=Os12t0632900-01;KEGG=Os12t0632900-01
Chr12	irgsp1_rep	five_prime_UTR	27122488	27122672	.	+	.	Parent=Os12t0632900-01
Chr12	irgsp1_rep	CDS	27122673	27125229	.	+	0	Parent=Os12t0632900-01
Chr12	irgsp1_rep	CDS	27125456	27125832	.	+	2	Parent=Os12t0632900-01
Chr12	irgsp1_rep	three_prime_UTR	27125833	27126252	.	+	.	Parent=Os12t0632900-01
Chr12	irgsp1_rep	mRNA	27128175	27131959	.	-	.	ID=Os12t0633000-01;Name=Os12t0633000-01;Locus_id=Os12g0633000;Note=Xylulose kinase.;Transcript_evidence=AK243340 (DDBJ%2C Best hit);ORF_evidence=NP_001149021.1 (RefSeq);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: phosphotransferase activity%2C alcohol group as acceptor (GO:0016773);InterPro=Carbohydrate kinase%2C FGGY (IPR000577),Carbohydrate kinase%2C FGGY%2C N-terminal (IPR018484),Carbohydrate kinase%2C FGGY%2C C-terminal (IPR018485);NIAS_FLcDNA=J100059J24;TENOR=Os12t0633000-01;KEGG=Os12t0633000-01 (EC:2.7.1.17)
Chr12	irgsp1_rep	five_prime_UTR	27131836	27131959	.	-	.	Parent=Os12t0633000-01
Chr12	irgsp1_rep	CDS	27131759	27131835	.	-	0	Parent=Os12t0633000-01
Chr12	irgsp1_rep	CDS	27131018	27131675	.	-	1	Parent=Os12t0633000-01
Chr12	irgsp1_rep	CDS	27130825	27130913	.	-	0	Parent=Os12t0633000-01
Chr12	irgsp1_rep	CDS	27130561	27130625	.	-	1	Parent=Os12t0633000-01
Chr12	irgsp1_rep	CDS	27130357	27130412	.	-	2	Parent=Os12t0633000-01
Chr12	irgsp1_rep	CDS	27129824	27129944	.	-	0	Parent=Os12t0633000-01
Chr12	irgsp1_rep	CDS	27129657	27129731	.	-	2	Parent=Os12t0633000-01
Chr12	irgsp1_rep	CDS	27129254	27129307	.	-	2	Parent=Os12t0633000-01
Chr12	irgsp1_rep	CDS	27129076	27129170	.	-	2	Parent=Os12t0633000-01
Chr12	irgsp1_rep	CDS	27128822	27128996	.	-	0	Parent=Os12t0633000-01
Chr12	irgsp1_rep	CDS	27128458	27128705	.	-	2	Parent=Os12t0633000-01
Chr12	irgsp1_rep	three_prime_UTR	27128175	27128457	.	-	.	Parent=Os12t0633000-01
Chr12	irgsp1_rep	mRNA	27132446	27134705	.	-	.	ID=Os12t0633200-01;Name=Os12t0633200-01;Locus_id=Os12g0633200;Note=Erg28-like family protein.;Transcript_evidence=AK062615 (DDBJ%2C Best hit);ORF_evidence=NP_001152172.1 (RefSeq);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=Erg28 (IPR005352);NIAS_FLcDNA=001-105-B02;Expression=AK062615;TENOR=Os12t0633200-01;KEGG=Os12t0633200-01
Chr12	irgsp1_rep	five_prime_UTR	27134624	27134705	.	-	.	Parent=Os12t0633200-01
Chr12	irgsp1_rep	CDS	27134491	27134623	.	-	0	Parent=Os12t0633200-01
Chr12	irgsp1_rep	CDS	27133276	27133482	.	-	2	Parent=Os12t0633200-01
Chr12	irgsp1_rep	CDS	27132643	27132722	.	-	2	Parent=Os12t0633200-01
Chr12	irgsp1_rep	three_prime_UTR	27132446	27132642	.	-	.	Parent=Os12t0633200-01
Chr12	irgsp1_rep	mRNA	27134483	27135201	.	+	.	ID=Os12t0633301-01;Name=Os12t0633301-01;Locus_id=Os12g0633301;Note=Conserved hypothetical protein.;Transcript_evidence=AK100870 (DDBJ%2C Best hit);ORF_evidence=NP_001177073.1 (RefSeq);NIAS_FLcDNA=J023124O04;Expression=AK100870;TENOR=Os12t0633301-01;KEGG=Os12t0633301-01
Chr12	irgsp1_rep	five_prime_UTR	27134483	27134528	.	+	.	Parent=Os12t0633301-01
Chr12	irgsp1_rep	CDS	27134529	27134798	.	+	0	Parent=Os12t0633301-01
Chr12	irgsp1_rep	three_prime_UTR	27134799	27135201	.	+	.	Parent=Os12t0633301-01
Chr12	irgsp1_rep	mRNA	27145970	27147649	.	-	.	ID=Os12t0633400-01;Name=Os12t0633400-01;Locus_id=Os12g0633400;CGSNL Gene Symbol=PR1-121;CGSNL Gene Name=PATHOGENESIS-RELATED GENE 1-121;Oryzabase Gene Symbol Synonym(s)=OsPR1#121%2C OsPR1-121;Oryzabase Gene Name Synonym(s)=pathogenesis-related protein 1-121%2C PR protein 1-121;Note=Similar to Pathogenesis-related protein PR-1 precursor.;Transcript_evidence=AK100940 (DDBJ%2C Best hit);ORF_evidence=Q647J6 (UniProt);GO=Cellular Component: extracellular region (GO:0005576);InterPro=Allergen V5/Tpx-1-related (IPR001283),CAP domain (IPR014044),Allergen V5/Tpx-1-related%2C conserved site (IPR018244);NIAS_FLcDNA=J023138C13;Oryzabase=13357;Expression=AK100940;TENOR=Os12t0633400-01;KEGG=Os12t0633400-01
Chr12	irgsp1_rep	five_prime_UTR	27147629	27147649	.	-	.	Parent=Os12t0633400-01
Chr12	irgsp1_rep	CDS	27146718	27147628	.	-	0	Parent=Os12t0633400-01
Chr12	irgsp1_rep	CDS	27146286	27146631	.	-	1	Parent=Os12t0633400-01
Chr12	irgsp1_rep	three_prime_UTR	27145970	27146285	.	-	.	Parent=Os12t0633400-01
Chr12	irgsp1_rep	mRNA	27151981	27152307	.	+	.	ID=Os12t0633501-00;Name=Os12t0633501-00;Locus_id=Os12g0633501;Note=Similar to MYB36 (myb domain protein 36)%3B DNA binding / transcription factor.;Transcript_evidence=AF099404 (DDBJ);ORF_evidence=NP_200570.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: DNA binding (GO:0003677),Molecular Function: protein binding (GO:0005515);InterPro=Homeodomain-like (IPR009057),Homeodomain-related (IPR012287),Myb transcription factor (IPR015495);TENOR=Os12t0633501-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	27151981	27152307	.	+	0	Parent=Os12t0633501-00
Chr12	irgsp1_rep	mRNA	27154499	27160415	.	-	.	ID=Os12t0633600-01;Name=Os12t0633600-01;Locus_id=Os12g0633600;CGSNL Gene Symbol=OSCA2.1;CGSNL Gene Name=HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 2.1;Oryzabase Gene Symbol Synonym(s)=OsOSCA2.1%2C OsIOSCA2.1%2C OsDDP10%2C DDP10%2C OsDDP10.1;Oryzabase Gene Name Synonym(s)=Hyperosmolality-gated calcium-permeable channel 2.1%2C DUF221 Domain containing Protein 10;Note=Protein of unknown function DUF221 domain containing protein.;Transcript_evidence=AK103521 (DDBJ%2C Best hit);ORF_evidence=Q681Q0 (UniProt);GO=Cellular Component: membrane (GO:0016020);InterPro=Domain of unknown function DUF221 (IPR003864);NIAS_FLcDNA=J033131J04;Oryzabase=19654;Expression=AK103521;TENOR=Os12t0633600-01;KEGG=Os12t0633600-01
Chr12	irgsp1_rep	five_prime_UTR	27160144	27160415	.	-	.	Parent=Os12t0633600-01
Chr12	irgsp1_rep	five_prime_UTR	27159979	27160040	.	-	.	Parent=Os12t0633600-01
Chr12	irgsp1_rep	five_prime_UTR	27159084	27159164	.	-	.	Parent=Os12t0633600-01
Chr12	irgsp1_rep	CDS	27158803	27159083	.	-	0	Parent=Os12t0633600-01
Chr12	irgsp1_rep	CDS	27158415	27158561	.	-	1	Parent=Os12t0633600-01
Chr12	irgsp1_rep	CDS	27158074	27158137	.	-	1	Parent=Os12t0633600-01
Chr12	irgsp1_rep	CDS	27157771	27157980	.	-	0	Parent=Os12t0633600-01
Chr12	irgsp1_rep	CDS	27157242	27157436	.	-	0	Parent=Os12t0633600-01
Chr12	irgsp1_rep	CDS	27156847	27157145	.	-	0	Parent=Os12t0633600-01
Chr12	irgsp1_rep	CDS	27156282	27156558	.	-	1	Parent=Os12t0633600-01
Chr12	irgsp1_rep	CDS	27155856	27156131	.	-	0	Parent=Os12t0633600-01
Chr12	irgsp1_rep	CDS	27155304	27155537	.	-	0	Parent=Os12t0633600-01
Chr12	irgsp1_rep	CDS	27154845	27155153	.	-	0	Parent=Os12t0633600-01
Chr12	irgsp1_rep	three_prime_UTR	27154499	27154844	.	-	.	Parent=Os12t0633600-01
Chr12	irgsp1_rep	mRNA	27154852	27159128	.	+	.	ID=Os12t0633650-00;Name=Os12t0633650-00;Locus_id=Os12g0633650;Note=Hypothetical protein.;Transcript_evidence=tplb0021b12 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0633650-00
Chr12	irgsp1_rep	five_prime_UTR	27154852	27154901	.	+	.	Parent=Os12t0633650-00
Chr12	irgsp1_rep	CDS	27154902	27155120	.	+	0	Parent=Os12t0633650-00
Chr12	irgsp1_rep	three_prime_UTR	27155121	27155171	.	+	.	Parent=Os12t0633650-00
Chr12	irgsp1_rep	three_prime_UTR	27155318	27155517	.	+	.	Parent=Os12t0633650-00
Chr12	irgsp1_rep	three_prime_UTR	27155834	27156114	.	+	.	Parent=Os12t0633650-00
Chr12	irgsp1_rep	three_prime_UTR	27156263	27156559	.	+	.	Parent=Os12t0633650-00
Chr12	irgsp1_rep	three_prime_UTR	27156846	27157148	.	+	.	Parent=Os12t0633650-00
Chr12	irgsp1_rep	three_prime_UTR	27157236	27157434	.	+	.	Parent=Os12t0633650-00
Chr12	irgsp1_rep	three_prime_UTR	27157764	27157974	.	+	.	Parent=Os12t0633650-00
Chr12	irgsp1_rep	three_prime_UTR	27158067	27158136	.	+	.	Parent=Os12t0633650-00
Chr12	irgsp1_rep	three_prime_UTR	27158414	27158556	.	+	.	Parent=Os12t0633650-00
Chr12	irgsp1_rep	three_prime_UTR	27158794	27159128	.	+	.	Parent=Os12t0633650-00
Chr12	irgsp1_rep	mRNA	27165898	27167702	.	+	.	ID=Os12t0633700-00;Name=Os12t0633700-00;Locus_id=Os12g0633700;Note=Similar to GDP dissociation inhibitor protein OsGDI1.;Transcript_evidence=CT833629 (DDBJ%2C Best hit);ORF_evidence=NP_175858.1 (RefSeq);GO=Cellular Component: myosin complex (GO:0016459),Molecular Function: motor activity (GO:0003774),Molecular Function: ATP binding (GO:0005524);InterPro=Myosin%2C N-terminal%2C SH3-like (IPR004009);TENOR=Os12t0633700-00;KEGG=Os12t0633700-00
Chr12	irgsp1_rep	five_prime_UTR	27165898	27166063	.	+	.	Parent=Os12t0633700-00
Chr12	irgsp1_rep	five_prime_UTR	27166174	27166755	.	+	.	Parent=Os12t0633700-00
Chr12	irgsp1_rep	CDS	27166756	27166962	.	+	0	Parent=Os12t0633700-00
Chr12	irgsp1_rep	CDS	27167036	27167290	.	+	0	Parent=Os12t0633700-00
Chr12	irgsp1_rep	three_prime_UTR	27167291	27167373	.	+	.	Parent=Os12t0633700-00
Chr12	irgsp1_rep	three_prime_UTR	27167473	27167702	.	+	.	Parent=Os12t0633700-00
Chr12	irgsp1_rep	mRNA	27168720	27169628	.	-	.	ID=Os12t0633800-00;Name=Os12t0633800-00;Locus_id=Os12g0633800;Note=Similar to Oxidoreductase%2C short chain dehydrogenase/reductase family protein%2C expressed.;Transcript_evidence=BT034181 (DDBJ);ORF_evidence=Q2QLP7 (UniProt);GO=Biological Process: metabolic process (GO:0008152),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: oxidoreductase activity (GO:0016491);InterPro=Short-chain dehydrogenase/reductase SDR (IPR002198),Glucose/ribitol dehydrogenase (IPR002347),NAD(P)-binding domain (IPR016040);TENOR=Os12t0633800-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	27168720	27169628	.	-	0	Parent=Os12t0633800-00
Chr12	irgsp1_rep	mRNA	27173014	27173907	.	+	.	ID=Os12t0634000-01;Name=Os12t0634000-01;Locus_id=Os12g0634000;Note=Conserved hypothetical protein.;Transcript_evidence=AK107507 (DDBJ%2C Best hit);ORF_evidence=B8BN63 (UniProt);NIAS_FLcDNA=002-129-E07;Expression=AK107507;TENOR=Os12t0634000-01;KEGG=Os12t0634000-01
Chr12	irgsp1_rep	five_prime_UTR	27173014	27173160	.	+	.	Parent=Os12t0634000-01
Chr12	irgsp1_rep	CDS	27173161	27173604	.	+	0	Parent=Os12t0634000-01
Chr12	irgsp1_rep	three_prime_UTR	27173605	27173907	.	+	.	Parent=Os12t0634000-01
Chr12	irgsp1_rep	mRNA	27190985	27192006	.	-	.	ID=Os12t0634400-01;Name=Os12t0634400-01;Locus_id=Os12g0634400;Note=Conserved hypothetical protein.;Transcript_evidence=AK110851 (DDBJ%2C Best hit);ORF_evidence=A2ZN33 (UniProt);NIAS_FLcDNA=002-172-C06;TENOR=Os12t0634400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	27192005	27192006	.	-	.	Parent=Os12t0634400-01
Chr12	irgsp1_rep	CDS	27191567	27192004	.	-	0	Parent=Os12t0634400-01
Chr12	irgsp1_rep	three_prime_UTR	27190985	27191566	.	-	.	Parent=Os12t0634400-01
Chr12	irgsp1_rep	mRNA	27197343	27197872	.	-	.	ID=Os12t0634500-00;Name=Os12t0634500-00;Locus_id=Os12g0634500;CGSNL Gene Symbol=BZIP89;CGSNL Gene Name=b-ZIP TRANSCRIPTION FACTOR 89;Oryzabase Gene Symbol Synonym(s)=OsbZIP89;Oryzabase Gene Name Synonym(s)=b-ZIP transcription factor 89;Note=bZIP transcription factor%2C bZIP-1 domain containing protein.;Transcript_evidence=EU976632 (DDBJ);ORF_evidence=NP_001177076.1 (RefSeq);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: sequence-specific DNA binding (GO:0043565),Molecular Function: protein dimerization activity (GO:0046983);InterPro=Basic-leucine zipper (bZIP) transcription factor (IPR004827),bZIP transcription factor%2C bZIP-1 (IPR011616);Oryzabase=10167;TENOR=Os12t0634500-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	27197850	27197872	.	-	.	Parent=Os12t0634500-00
Chr12	irgsp1_rep	CDS	27197343	27197849	.	-	0	Parent=Os12t0634500-00
Chr12	irgsp1_rep	mRNA	27205497	27206108	.	-	.	ID=Os12t0634600-01;Name=Os12t0634600-01;Locus_id=Os12g0634600;Note=Conserved hypothetical protein.;Transcript_evidence=AK070357 (DDBJ%2C Best hit);ORF_evidence=A2ZN35 (UniProt);NIAS_FLcDNA=J023053N08;Expression=AK070357;TENOR=Os12t0634600-01;KEGG=Os12t0634600-01
Chr12	irgsp1_rep	five_prime_UTR	27206065	27206108	.	-	.	Parent=Os12t0634600-01
Chr12	irgsp1_rep	CDS	27205705	27206064	.	-	0	Parent=Os12t0634600-01
Chr12	irgsp1_rep	three_prime_UTR	27205497	27205704	.	-	.	Parent=Os12t0634600-01
Chr12	irgsp1_rep	mRNA	27209219	27209842	.	+	.	ID=Os12t0634700-00;Name=Os12t0634700-00;Locus_id=Os12g0634700;Note=Similar to glycine-rich protein.;Transcript_evidence=BT064148 (DDBJ);ORF_evidence=NP_193893.1 (RefSeq);TENOR=Os12t0634700-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	27209219	27209273	.	+	.	Parent=Os12t0634700-00
Chr12	irgsp1_rep	CDS	27209274	27209705	.	+	0	Parent=Os12t0634700-00
Chr12	irgsp1_rep	three_prime_UTR	27209706	27209842	.	+	.	Parent=Os12t0634700-00
Chr12	irgsp1_rep	mRNA	27210339	27213148	.	-	.	ID=Os12t0634800-01;Name=Os12t0634800-01;Locus_id=Os12g0634800;Note=Protein of unknown function NUC189%2C C-terminal domain containing protein.;Transcript_evidence=AK110667 (DDBJ%2C Best hit);ORF_evidence=NP_001043716.1 (RefSeq);InterPro=Small-subunit processome%2C Utp12 (IPR007148);NIAS_FLcDNA=002-169-F09;Expression=AK110667;TENOR=Os12t0634800-01;KEGG=Os12t0634800-01
Chr12	irgsp1_rep	five_prime_UTR	27213033	27213148	.	-	.	Parent=Os12t0634800-01
Chr12	irgsp1_rep	CDS	27212972	27213032	.	-	0	Parent=Os12t0634800-01
Chr12	irgsp1_rep	CDS	27212407	27212654	.	-	2	Parent=Os12t0634800-01
Chr12	irgsp1_rep	CDS	27212076	27212158	.	-	0	Parent=Os12t0634800-01
Chr12	irgsp1_rep	CDS	27211711	27211822	.	-	1	Parent=Os12t0634800-01
Chr12	irgsp1_rep	CDS	27210893	27210967	.	-	0	Parent=Os12t0634800-01
Chr12	irgsp1_rep	CDS	27210632	27210811	.	-	0	Parent=Os12t0634800-01
Chr12	irgsp1_rep	three_prime_UTR	27210339	27210631	.	-	.	Parent=Os12t0634800-01
Chr12	irgsp1_rep	mRNA	27213523	27219059	.	-	.	ID=Os12t0634900-01;Name=Os12t0634900-01;Locus_id=Os12g0634900;Note=Ankyrin repeat domain containing protein.;Transcript_evidence=AK106811 (DDBJ%2C Best hit);ORF_evidence=B8BN65 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide TPR2 (IPR013105),Tetratricopeptide repeat (IPR019734),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=002-116-C10;TENOR=Os12t0634900-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	27218903	27219059	.	-	.	Parent=Os12t0634900-01
Chr12	irgsp1_rep	CDS	27218845	27218902	.	-	0	Parent=Os12t0634900-01
Chr12	irgsp1_rep	CDS	27218671	27218742	.	-	2	Parent=Os12t0634900-01
Chr12	irgsp1_rep	CDS	27218345	27218509	.	-	2	Parent=Os12t0634900-01
Chr12	irgsp1_rep	CDS	27218078	27218212	.	-	2	Parent=Os12t0634900-01
Chr12	irgsp1_rep	CDS	27216920	27217059	.	-	2	Parent=Os12t0634900-01
Chr12	irgsp1_rep	CDS	27216578	27216667	.	-	0	Parent=Os12t0634900-01
Chr12	irgsp1_rep	CDS	27216322	27216438	.	-	0	Parent=Os12t0634900-01
Chr12	irgsp1_rep	CDS	27215454	27215606	.	-	0	Parent=Os12t0634900-01
Chr12	irgsp1_rep	CDS	27214861	27214962	.	-	0	Parent=Os12t0634900-01
Chr12	irgsp1_rep	CDS	27214173	27214343	.	-	0	Parent=Os12t0634900-01
Chr12	irgsp1_rep	CDS	27213994	27214073	.	-	0	Parent=Os12t0634900-01
Chr12	irgsp1_rep	CDS	27213874	27213898	.	-	1	Parent=Os12t0634900-01
Chr12	irgsp1_rep	three_prime_UTR	27213523	27213873	.	-	.	Parent=Os12t0634900-01
Chr12	irgsp1_rep	mRNA	27238568	27239382	.	-	.	ID=Os12t0635400-01;Name=Os12t0635400-01;Locus_id=Os12g0635400;Note=VQ domain containing protein.;Transcript_evidence=AK063156 (DDBJ%2C Best hit);ORF_evidence=A2ZN39 (UniProt);InterPro=VQ (IPR008889);NIAS_FLcDNA=001-111-H12;Expression=AK063156;TENOR=Os12t0635400-01;KEGG=Os12t0635400-01
Chr12	irgsp1_rep	five_prime_UTR	27239309	27239382	.	-	.	Parent=Os12t0635400-01
Chr12	irgsp1_rep	CDS	27238973	27239308	.	-	0	Parent=Os12t0635400-01
Chr12	irgsp1_rep	three_prime_UTR	27238568	27238972	.	-	.	Parent=Os12t0635400-01
Chr12	irgsp1_rep	mRNA	27243709	27246146	.	+	.	ID=Os12t0635500-01;Name=Os12t0635500-01;Locus_id=Os12g0635500;Note=Protein of unknown function DUF266%2C plant domain containing protein.;Transcript_evidence=AK241676 (DDBJ%2C Best hit);ORF_evidence=Q01HM5 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: acetylglucosaminyltransferase activity (GO:0008375);InterPro=Glycosyl transferase%2C family 14 (IPR003406);NIAS_FLcDNA=J065192J19;TENOR=Os12t0635500-01;KEGG=Os12t0635500-01
Chr12	irgsp1_rep	five_prime_UTR	27243709	27243907	.	+	.	Parent=Os12t0635500-01
Chr12	irgsp1_rep	five_prime_UTR	27244379	27244379	.	+	.	Parent=Os12t0635500-01
Chr12	irgsp1_rep	CDS	27244380	27244964	.	+	0	Parent=Os12t0635500-01
Chr12	irgsp1_rep	CDS	27245363	27246001	.	+	0	Parent=Os12t0635500-01
Chr12	irgsp1_rep	three_prime_UTR	27246002	27246146	.	+	.	Parent=Os12t0635500-01
Chr12	irgsp1_rep	mRNA	27249717	27250880	.	-	.	ID=Os12t0635700-01;Name=Os12t0635700-01;Locus_id=Os12g0635700;Note=Similar to GNS1/SUR4 membrane protein.;Transcript_evidence=AK108161 (DDBJ%2C Best hit);ORF_evidence=B6SZM0 (UniProt);GO=Cellular Component: integral to membrane (GO:0016021);InterPro=GNS1/SUR4 membrane protein (IPR002076);NIAS_FLcDNA=002-139-G12;Expression=AK108161;TENOR=Os12t0635700-01;KEGG=Os12t0635700-01
Chr12	irgsp1_rep	five_prime_UTR	27250843	27250880	.	-	.	Parent=Os12t0635700-01
Chr12	irgsp1_rep	CDS	27249958	27250842	.	-	0	Parent=Os12t0635700-01
Chr12	irgsp1_rep	three_prime_UTR	27249717	27249957	.	-	.	Parent=Os12t0635700-01
Chr12	irgsp1_rep	mRNA	27263777	27265844	.	+	.	ID=Os12t0636000-01;Name=Os12t0636000-01;Locus_id=Os12g0636000;CGSNL Gene Symbol=RDCP5;CGSNL Gene Name=RING DOMAIN-CONTAINING PROTEIN 5;Oryzabase Gene Symbol Synonym(s)=OsRDCP5;Oryzabase Gene Name Synonym(s)=RING domain-containing protein 5;Note=Zinc finger%2C RING/FYVE/PHD-type domain containing protein.;Transcript_evidence=AK099519 (DDBJ%2C Best hit),AK062128 (DDBJ%2C Best hit);ORF_evidence=NP_001150153.1 (RefSeq);GO=Molecular Function: protein binding (GO:0005515),Molecular Function: zinc ion binding (GO:0008270);InterPro=Zinc finger%2C RING-type (IPR001841),Zinc finger%2C RING/FYVE/PHD-type (IPR013083),Zinc finger%2C RING-type%2C conserved site (IPR017907),Zinc finger%2C C3HC4 RING-type (IPR018957);NIAS_FLcDNA=J013030E05,001-045-D12;Oryzabase=9453;Expression=AK099519;TENOR=Os12t0636000-01;KEGG=Os12t0636000-01 (EC:6.3.2.19)
Chr12	irgsp1_rep	five_prime_UTR	27263777	27263847	.	+	.	Parent=Os12t0636000-01
Chr12	irgsp1_rep	five_prime_UTR	27264825	27264840	.	+	.	Parent=Os12t0636000-01
Chr12	irgsp1_rep	CDS	27264841	27265545	.	+	0	Parent=Os12t0636000-01
Chr12	irgsp1_rep	three_prime_UTR	27265546	27265844	.	+	.	Parent=Os12t0636000-01
Chr12	irgsp1_rep	mRNA	27266477	27271439	.	+	.	ID=Os12t0636100-01;Name=Os12t0636100-01;Locus_id=Os12g0636100;Note=Tetratricopeptide-like helical domain containing protein.;Transcript_evidence=AK072712 (DDBJ%2C Best hit);ORF_evidence=A3CJS4 (UniProt);GO=Molecular Function: binding (GO:0005488),Molecular Function: protein binding (GO:0005515);InterPro=Ankyrin repeat (IPR002110),Tetratricopeptide-like helical (IPR011990),Tetratricopeptide repeat-containing (IPR013026),Tetratricopeptide TPR2 (IPR013105),Tetratricopeptide repeat (IPR019734),Ankyrin repeat-containing domain (IPR020683);NIAS_FLcDNA=J023141I08;Expression=AK072712;TENOR=Os12t0636100-01;KEGG=Os12t0636100-01
Chr12	irgsp1_rep	five_prime_UTR	27266477	27266562	.	+	.	Parent=Os12t0636100-01
Chr12	irgsp1_rep	CDS	27266563	27266617	.	+	0	Parent=Os12t0636100-01
Chr12	irgsp1_rep	CDS	27266728	27266799	.	+	2	Parent=Os12t0636100-01
Chr12	irgsp1_rep	CDS	27267113	27267286	.	+	2	Parent=Os12t0636100-01
Chr12	irgsp1_rep	CDS	27267396	27267530	.	+	2	Parent=Os12t0636100-01
Chr12	irgsp1_rep	CDS	27268270	27268409	.	+	2	Parent=Os12t0636100-01
Chr12	irgsp1_rep	CDS	27268707	27268796	.	+	0	Parent=Os12t0636100-01
Chr12	irgsp1_rep	CDS	27268927	27269049	.	+	0	Parent=Os12t0636100-01
Chr12	irgsp1_rep	CDS	27269453	27269605	.	+	0	Parent=Os12t0636100-01
Chr12	irgsp1_rep	CDS	27269910	27270011	.	+	0	Parent=Os12t0636100-01
Chr12	irgsp1_rep	CDS	27270681	27270851	.	+	0	Parent=Os12t0636100-01
Chr12	irgsp1_rep	CDS	27270945	27271024	.	+	0	Parent=Os12t0636100-01
Chr12	irgsp1_rep	CDS	27271101	27271125	.	+	1	Parent=Os12t0636100-01
Chr12	irgsp1_rep	three_prime_UTR	27271126	27271439	.	+	.	Parent=Os12t0636100-01
Chr12	irgsp1_rep	mRNA	27271708	27276782	.	-	.	ID=Os12t0636200-01;Name=Os12t0636200-01;Locus_id=Os12g0636200;CGSNL Gene Symbol=WAHD1;CGSNL Gene Name=WALL-ASSOCIATED HOMEOOMAIN PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsWAHD1;Oryzabase Gene Name Synonym(s)=BLH6-like 2%2C BEL1-LIKE HOMEODOMAIN6-like 2%2C Wall-Associated Homeoomain protein 1;Note=Similar to Prep (Fragment).;Transcript_evidence=AK070465 (DDBJ%2C Best hit);ORF_evidence=Q6QUW0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),POX (IPR006563),Homeobox KN domain (IPR008422),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);NIAS_FLcDNA=J023054P21;Oryzabase=20447;Expression=AK070465;TENOR=Os12t0636200-01;KEGG=Os12t0636200-01
Chr12	irgsp1_rep	five_prime_UTR	27276225	27276782	.	-	.	Parent=Os12t0636200-01
Chr12	irgsp1_rep	five_prime_UTR	27275219	27275299	.	-	.	Parent=Os12t0636200-01
Chr12	irgsp1_rep	five_prime_UTR	27274381	27274527	.	-	.	Parent=Os12t0636200-01
Chr12	irgsp1_rep	CDS	27273520	27274380	.	-	0	Parent=Os12t0636200-01
Chr12	irgsp1_rep	CDS	27272927	27273303	.	-	0	Parent=Os12t0636200-01
Chr12	irgsp1_rep	CDS	27272786	27272846	.	-	1	Parent=Os12t0636200-01
Chr12	irgsp1_rep	CDS	27272006	27272650	.	-	0	Parent=Os12t0636200-01
Chr12	irgsp1_rep	three_prime_UTR	27271708	27272005	.	-	.	Parent=Os12t0636200-01
Chr12	irgsp1_rep	mRNA	27272207	27276727	.	-	.	ID=Os12t0636200-02;Name=Os12t0636200-02;Locus_id=Os12g0636200;CGSNL Gene Symbol=WAHD1;CGSNL Gene Name=WALL-ASSOCIATED HOMEOOMAIN PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsWAHD1;Oryzabase Gene Name Synonym(s)=BLH6-like 2%2C BEL1-LIKE HOMEODOMAIN6-like 2%2C Wall-Associated Homeoomain protein 1;Note=Similar to Benzothiadiazole-induced homeodomain protein 1.;Transcript_evidence=AK121356 (DDBJ%2C Best hit);ORF_evidence=Q6QUW0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),POX (IPR006563),Homeobox KN domain (IPR008422),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);NIAS_FLcDNA=J023122O08;Oryzabase=20447;Expression=AK121356;TENOR=Os12t0636200-02;KEGG=Os12t0636200-02
Chr12	irgsp1_rep	five_prime_UTR	27276225	27276727	.	-	.	Parent=Os12t0636200-02
Chr12	irgsp1_rep	five_prime_UTR	27275219	27275299	.	-	.	Parent=Os12t0636200-02
Chr12	irgsp1_rep	five_prime_UTR	27274381	27274527	.	-	.	Parent=Os12t0636200-02
Chr12	irgsp1_rep	CDS	27273520	27274380	.	-	0	Parent=Os12t0636200-02
Chr12	irgsp1_rep	CDS	27272927	27273303	.	-	0	Parent=Os12t0636200-02
Chr12	irgsp1_rep	CDS	27272786	27272846	.	-	1	Parent=Os12t0636200-02
Chr12	irgsp1_rep	CDS	27272207	27272650	.	-	0	Parent=Os12t0636200-02
Chr12	irgsp1_rep	mRNA	27271747	27274075	.	-	.	ID=Os12t0636200-03;Name=Os12t0636200-03;Locus_id=Os12g0636200;CGSNL Gene Symbol=WAHD1;CGSNL Gene Name=WALL-ASSOCIATED HOMEOOMAIN PROTEIN 1;Oryzabase Gene Symbol Synonym(s)=OsWAHD1;Oryzabase Gene Name Synonym(s)=BLH6-like 2%2C BEL1-LIKE HOMEODOMAIN6-like 2%2C Wall-Associated Homeoomain protein 1;Note=Similar to Benzothiadiazole-induced homeodomain protein 1.;Transcript_evidence=AK104872 (DDBJ%2C Best hit);ORF_evidence=Q6QUW0 (UniProt);GO=Biological Process: regulation of transcription%2C DNA-dependent (GO:0006355),Cellular Component: nucleus (GO:0005634),Molecular Function: DNA binding (GO:0003677),Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700),Molecular Function: protein binding (GO:0005515),Molecular Function: sequence-specific DNA binding (GO:0043565);InterPro=Homeobox (IPR001356),POX (IPR006563),Homeobox KN domain (IPR008422),Homeodomain-like (IPR009057),Homeodomain-related (IPR012287);NIAS_FLcDNA=001-044-C01;Oryzabase=20447;Expression=AK104872;TENOR=Os12t0636200-03;KEGG=Os12t0636200-03
Chr12	irgsp1_rep	five_prime_UTR	27274075	27274075	.	-	.	Parent=Os12t0636200-03
Chr12	irgsp1_rep	CDS	27273520	27274074	.	-	0	Parent=Os12t0636200-03
Chr12	irgsp1_rep	CDS	27272927	27273303	.	-	0	Parent=Os12t0636200-03
Chr12	irgsp1_rep	CDS	27272786	27272846	.	-	1	Parent=Os12t0636200-03
Chr12	irgsp1_rep	CDS	27272006	27272650	.	-	0	Parent=Os12t0636200-03
Chr12	irgsp1_rep	three_prime_UTR	27271747	27272005	.	-	.	Parent=Os12t0636200-03
Chr12	irgsp1_rep	mRNA	27272177	27273588	.	+	.	ID=Os12t0636300-00;Name=Os12t0636300-00;Locus_id=Os12g0636300;Note=Hypothetical protein.;Transcript_evidence=tplb0025a22 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0636300-00
Chr12	irgsp1_rep	five_prime_UTR	27272177	27272258	.	+	.	Parent=Os12t0636300-00
Chr12	irgsp1_rep	CDS	27272259	27272672	.	+	0	Parent=Os12t0636300-00
Chr12	irgsp1_rep	three_prime_UTR	27272673	27272684	.	+	.	Parent=Os12t0636300-00
Chr12	irgsp1_rep	three_prime_UTR	27272903	27273297	.	+	.	Parent=Os12t0636300-00
Chr12	irgsp1_rep	three_prime_UTR	27273513	27273588	.	+	.	Parent=Os12t0636300-00
Chr12	irgsp1_rep	mRNA	27286553	27288661	.	-	.	ID=Os12t0636400-01;Name=Os12t0636400-01;Locus_id=Os12g0636400;Note=Similar to Epoxide hydrolase 2.;Transcript_evidence=AK106721 (DDBJ%2C Best hit);ORF_evidence=B6SUW2 (UniProt);GO=Molecular Function: catalytic activity (GO:0003824);InterPro=Epoxide hydrolase-like (IPR000639);NIAS_FLcDNA=002-114-G08;TENOR=Os12t0636400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	27288652	27288661	.	-	.	Parent=Os12t0636400-01
Chr12	irgsp1_rep	CDS	27288172	27288651	.	-	0	Parent=Os12t0636400-01
Chr12	irgsp1_rep	CDS	27287115	27287353	.	-	0	Parent=Os12t0636400-01
Chr12	irgsp1_rep	CDS	27286783	27287038	.	-	1	Parent=Os12t0636400-01
Chr12	irgsp1_rep	three_prime_UTR	27286553	27286782	.	-	.	Parent=Os12t0636400-01
Chr12	irgsp1_rep	mRNA	27293797	27294633	.	-	.	ID=Os12t0636700-01;Name=Os12t0636700-01;Locus_id=Os12g0636700;Note=Conserved hypothetical protein.;Transcript_evidence=AK111056 (DDBJ%2C Best hit);ORF_evidence=A2ZN51 (UniProt);NIAS_FLcDNA=002-175-D01;Expression=AK111056;TENOR=Os12t0636700-01;KEGG=Os12t0636700-01
Chr12	irgsp1_rep	five_prime_UTR	27294604	27294633	.	-	.	Parent=Os12t0636700-01
Chr12	irgsp1_rep	CDS	27294040	27294603	.	-	0	Parent=Os12t0636700-01
Chr12	irgsp1_rep	three_prime_UTR	27293797	27294039	.	-	.	Parent=Os12t0636700-01
Chr12	irgsp1_rep	mRNA	27295433	27298714	.	-	.	ID=Os12t0636800-01;Name=Os12t0636800-01;Locus_id=Os12g0636800;CGSNL Gene Symbol=UBC26;CGSNL Gene Name=UBIQUITIN-CONJUGATING ENZYME 26;Oryzabase Gene Symbol Synonym(s)=OsUBC26;Oryzabase Gene Name Synonym(s)=Ubiquitin-conjugating enzyme 26;Note=Ubiquitin-conjugating enzyme/RWD-like domain containing protein.;Transcript_evidence=AK071648 (DDBJ%2C Best hit);ORF_evidence=B4FMX0 (UniProt);GO=Molecular Function: acid-amino acid ligase activity (GO:0016881);InterPro=Ubiquitin-conjugating enzyme%2C E2 (IPR000608),Ubiquitin-conjugating enzyme/RWD-like (IPR016135);NIAS_FLcDNA=J023106H02;Oryzabase=19566;Expression=AK071648;TENOR=Os12t0636800-01;KEGG=Os12t0636800-01 (EC:6.3.2.19)
Chr12	irgsp1_rep	five_prime_UTR	27298605	27298714	.	-	.	Parent=Os12t0636800-01
Chr12	irgsp1_rep	CDS	27298575	27298604	.	-	0	Parent=Os12t0636800-01
Chr12	irgsp1_rep	CDS	27298367	27298470	.	-	0	Parent=Os12t0636800-01
Chr12	irgsp1_rep	CDS	27298071	27298173	.	-	1	Parent=Os12t0636800-01
Chr12	irgsp1_rep	CDS	27297883	27297946	.	-	0	Parent=Os12t0636800-01
Chr12	irgsp1_rep	CDS	27295847	27295935	.	-	2	Parent=Os12t0636800-01
Chr12	irgsp1_rep	CDS	27295664	27295759	.	-	0	Parent=Os12t0636800-01
Chr12	irgsp1_rep	three_prime_UTR	27295433	27295663	.	-	.	Parent=Os12t0636800-01
Chr12	irgsp1_rep	mRNA	27300282	27300904	.	-	.	ID=Os12t0636900-01;Name=Os12t0636900-01;Locus_id=Os12g0636900;Note=Non-protein coding transcript.;Transcript_evidence=AK119972 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=002-184-E07;TENOR=Os12t0636900-01
Chr12	irgsp1_rep	exon	27300282	27300904	.	-	.	Parent=Os12t0636900-01
Chr12	irgsp1_rep	mRNA	27301298	27302686	.	-	.	ID=Os12t0637000-00;Name=Os12t0637000-00;Locus_id=Os12g0637000;CGSNL Gene Symbol=PAP10B;CGSNL Gene Name=PURPLE ACID PHOSPHATASE 10B;Oryzabase Gene Symbol Synonym(s)=OsPAP10b;Oryzabase Gene Name Synonym(s)=purple acid phosphatase 10b;Note=Purple acid phosphatase precursor (EC 3.1.3.2).;Transcript_evidence=ab initio prediction;ORF_evidence=B6SPD1 (UniProt);GO=Molecular Function: acid phosphatase activity (GO:0003993),Molecular Function: protein binding (GO:0005515),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: metal ion binding (GO:0046872);InterPro=Fibronectin%2C type III (IPR003961),Metallophosphoesterase domain (IPR004843),Purple acid phosphatase-like%2C N-terminal (IPR008963),Purple acid phosphatase%2C N-terminal (IPR015914);Oryzabase=11383;TENOR=Os12t0637000-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	27301298	27302686	.	-	0	Parent=Os12t0637000-00
Chr12	irgsp1_rep	mRNA	27303890	27307145	.	-	.	ID=Os12t0637100-02;Name=Os12t0637100-02;Locus_id=Os12g0637100;RAP-DB Gene Symbol Synonym(s)=OsPAP10c;RAP-DB Gene Name Synonym(s)=purple acid phosphatase 10c;CGSNL Gene Symbol=PAP10C;CGSNL Gene Name=PURPLE ACID PHOSPHATASE 10C;Oryzabase Gene Symbol Synonym(s)=OsPAP10c;Oryzabase Gene Name Synonym(s)=purple acid phosphatase 10c;Note=Acid phosphatase%2C Regulation of the growth under phosphate deficient condition;Transcript_evidence=AK066273,AK058368;ORF_evidence=Q2QLL9;GO=Molecular Function: acid phosphatase activity (GO:0003993),Molecular Function: hydrolase activity (GO:0016787),Molecular Function: metal ion binding (GO:0046872);InterPro=Purple acid phosphatase-like%2C N-terminal (IPR008963),Metallo-dependent phosphatase-like (IPR029052),Purple acid phosphatase%2C N-terminal (IPR015914),Purple acid phosphatase%2C metallophosphatase domain (IPR041792),Calcineurin-like phosphoesterase domain%2C ApaH type (IPR004843),Iron/zinc purple acid phosphatase-like C-terminal domain (IPR025733);NIAS_FLcDNA=J013061L15,001-014-G03;Manual Curation=April 10%2C 2020;Literature_PMID=32270183;Oryzabase=11384;Expression=AK066273;TENOR=Os12t0637100-02;KEGG=Os12t0637100-02 (EC:3.1.3.2)
Chr12	irgsp1_rep	five_prime_UTR	27307096	27307145	.	-	.	Parent=Os12t0637100-02
Chr12	irgsp1_rep	CDS	27306913	27307095	.	-	0	Parent=Os12t0637100-02
Chr12	irgsp1_rep	CDS	27306531	27306843	.	-	0	Parent=Os12t0637100-02
Chr12	irgsp1_rep	CDS	27304300	27305195	.	-	2	Parent=Os12t0637100-02
Chr12	irgsp1_rep	three_prime_UTR	27303890	27304299	.	-	.	Parent=Os12t0637100-02
Chr12	irgsp1_rep	mRNA	27309871	27311170	.	-	.	ID=Os12t0637200-01;Name=Os12t0637200-01;Locus_id=Os12g0637200;CGSNL Gene Symbol=PAP10D;CGSNL Gene Name=PURPLE ACID PHOSPHATASE 10D;Oryzabase Gene Symbol Synonym(s)=OsPAP10d;Oryzabase Gene Name Synonym(s)=purple acid phosphatase 10d;Note=Similar to Purple acid phosphatase.;Transcript_evidence=AK241534 (DDBJ%2C Best hit);ORF_evidence=B6SPD1 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Metallophosphoesterase domain (IPR004843);NIAS_FLcDNA=J065172L20;Oryzabase=11385;TENOR=Os12t0637200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	27311170	27311170	.	-	.	Parent=Os12t0637200-01
Chr12	irgsp1_rep	CDS	27310177	27311169	.	-	0	Parent=Os12t0637200-01
Chr12	irgsp1_rep	three_prime_UTR	27309871	27310176	.	-	.	Parent=Os12t0637200-01
Chr12	irgsp1_rep	mRNA	27313227	27316327	.	+	.	ID=Os12t0637300-01;Name=Os12t0637300-01;Locus_id=Os12g0637300;Note=Conserved hypothetical protein.;Transcript_evidence=AK072376 (DDBJ%2C Best hit);ORF_evidence=B8AL73 (UniProt);NIAS_FLcDNA=J023074A03;TENOR=Os12t0637300-01
Chr12	irgsp1_rep	five_prime_UTR	27313227	27313402	.	+	.	Parent=Os12t0637300-01
Chr12	irgsp1_rep	CDS	27313403	27313699	.	+	0	Parent=Os12t0637300-01
Chr12	irgsp1_rep	three_prime_UTR	27313700	27314521	.	+	.	Parent=Os12t0637300-01
Chr12	irgsp1_rep	three_prime_UTR	27314650	27315000	.	+	.	Parent=Os12t0637300-01
Chr12	irgsp1_rep	three_prime_UTR	27315101	27315307	.	+	.	Parent=Os12t0637300-01
Chr12	irgsp1_rep	three_prime_UTR	27315441	27315511	.	+	.	Parent=Os12t0637300-01
Chr12	irgsp1_rep	three_prime_UTR	27316104	27316327	.	+	.	Parent=Os12t0637300-01
Chr12	irgsp1_rep	mRNA	27316457	27317290	.	-	.	ID=Os12t0637400-01;Name=Os12t0637400-01;Locus_id=Os12g0637400;Note=Similar to Purple acid phosphatase (EC 3.1.3.2) (Fragment).;Transcript_evidence=AK072546 (DDBJ%2C Best hit);ORF_evidence=Q84V55 (UniProt);GO=Molecular Function: acid phosphatase activity (GO:0003993),Molecular Function: metal ion binding (GO:0046872);InterPro=Purple acid phosphatase-like%2C N-terminal (IPR008963),Purple acid phosphatase%2C N-terminal (IPR015914);NIAS_FLcDNA=J023133D10;Expression=AK072546;TENOR=Os12t0637400-01;KEGG=Os12t0637400-01 (EC:3.1.3.2)
Chr12	irgsp1_rep	five_prime_UTR	27317248	27317290	.	-	.	Parent=Os12t0637400-01
Chr12	irgsp1_rep	CDS	27316840	27317247	.	-	0	Parent=Os12t0637400-01
Chr12	irgsp1_rep	three_prime_UTR	27316457	27316839	.	-	.	Parent=Os12t0637400-01
Chr12	irgsp1_rep	mRNA	27324604	27326628	.	-	.	ID=Os12t0637500-01;Name=Os12t0637500-01;Locus_id=Os12g0637500;Note=Hypothetical protein.;Transcript_evidence=AK240776 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J053069A05;TENOR=Os12t0637500-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	27326628	27326628	.	-	.	Parent=Os12t0637500-01
Chr12	irgsp1_rep	CDS	27326262	27326627	.	-	0	Parent=Os12t0637500-01
Chr12	irgsp1_rep	three_prime_UTR	27324604	27326261	.	-	.	Parent=Os12t0637500-01
Chr12	irgsp1_rep	mRNA	27324762	27327494	.	+	.	ID=Os12t0637700-02;Name=Os12t0637700-02;Locus_id=Os12g0637700;Note=Nodulin-like domain containing protein.;Transcript_evidence=AK105095 (DDBJ%2C Best hit),AK070555 (DDBJ%2C Best hit);ORF_evidence=NP_001152028.1 (RefSeq);InterPro=Nodulin-like (IPR010658),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=001-100-A11,J023061E14;Expression=AK105095;TENOR=Os12t0637700-02;KEGG=Os12t0637700-02
Chr12	irgsp1_rep	five_prime_UTR	27324762	27324820	.	+	.	Parent=Os12t0637700-02
Chr12	irgsp1_rep	CDS	27324821	27326545	.	+	0	Parent=Os12t0637700-02
Chr12	irgsp1_rep	three_prime_UTR	27326546	27327494	.	+	.	Parent=Os12t0637700-02
Chr12	irgsp1_rep	mRNA	27330083	27331936	.	-	.	ID=Os12t0637800-01;Name=Os12t0637800-01;Locus_id=Os12g0637800;Note=Nodulin-like domain containing protein.;Transcript_evidence=AK109612 (DDBJ%2C Best hit);ORF_evidence=NP_001152028.1 (RefSeq);InterPro=Nodulin-like (IPR010658),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=002-137-G07;Oryzabase=22454;Expression=AK109612;TENOR=Os12t0637800-01;KEGG=Os12t0637800-01
Chr12	irgsp1_rep	five_prime_UTR	27331885	27331936	.	-	.	Parent=Os12t0637800-01
Chr12	irgsp1_rep	CDS	27330145	27331884	.	-	0	Parent=Os12t0637800-01
Chr12	irgsp1_rep	three_prime_UTR	27330083	27330144	.	-	.	Parent=Os12t0637800-01
Chr12	irgsp1_rep	mRNA	27336090	27337780	.	-	.	ID=Os12t0637900-00;Name=Os12t0637900-00;Locus_id=Os12g0637900;Oryzabase Gene Symbol Synonym(s)=RMP5;Oryzabase Gene Name Synonym(s)=rice microspore-preferred 5;Note=CHCH domain containing protein.;Transcript_evidence=CT835536 (DDBJ%2C Best hit);ORF_evidence=NP_001067375.1 (RefSeq);InterPro=MTCP1 (IPR009069);Oryzabase=21547;TENOR=Os12t0637900-00;KEGG=Os12t0637900-00
Chr12	irgsp1_rep	five_prime_UTR	27337750	27337780	.	-	.	Parent=Os12t0637900-00
Chr12	irgsp1_rep	CDS	27337725	27337749	.	-	0	Parent=Os12t0637900-00
Chr12	irgsp1_rep	CDS	27337349	27337525	.	-	2	Parent=Os12t0637900-00
Chr12	irgsp1_rep	CDS	27336283	27336587	.	-	2	Parent=Os12t0637900-00
Chr12	irgsp1_rep	three_prime_UTR	27336090	27336282	.	-	.	Parent=Os12t0637900-00
Chr12	irgsp1_rep	mRNA	27340235	27344105	.	-	.	ID=Os12t0638100-01;Name=Os12t0638100-01;Locus_id=Os12g0638100;Note=Similar to Receptor-like protein kinase.;Transcript_evidence=AK103026 (DDBJ%2C Best hit);ORF_evidence=B6SKC1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Leucine-rich repeat (IPR001611),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Leucine-rich repeat-containing N-terminal%2C type 2 (IPR013210),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=J033117B13;Expression=AK103026;TENOR=Os12t0638100-01;KEGG=Os12t0638100-01
Chr12	irgsp1_rep	five_prime_UTR	27344061	27344105	.	-	.	Parent=Os12t0638100-01
Chr12	irgsp1_rep	CDS	27343907	27344060	.	-	0	Parent=Os12t0638100-01
Chr12	irgsp1_rep	CDS	27343649	27343784	.	-	2	Parent=Os12t0638100-01
Chr12	irgsp1_rep	CDS	27343368	27343439	.	-	1	Parent=Os12t0638100-01
Chr12	irgsp1_rep	CDS	27343185	27343256	.	-	1	Parent=Os12t0638100-01
Chr12	irgsp1_rep	CDS	27343004	27343075	.	-	1	Parent=Os12t0638100-01
Chr12	irgsp1_rep	CDS	27342863	27342934	.	-	1	Parent=Os12t0638100-01
Chr12	irgsp1_rep	CDS	27342678	27342749	.	-	1	Parent=Os12t0638100-01
Chr12	irgsp1_rep	CDS	27342384	27342492	.	-	1	Parent=Os12t0638100-01
Chr12	irgsp1_rep	CDS	27342094	27342274	.	-	0	Parent=Os12t0638100-01
Chr12	irgsp1_rep	CDS	27341667	27341999	.	-	2	Parent=Os12t0638100-01
Chr12	irgsp1_rep	CDS	27341287	27341541	.	-	2	Parent=Os12t0638100-01
Chr12	irgsp1_rep	CDS	27340799	27340932	.	-	2	Parent=Os12t0638100-01
Chr12	irgsp1_rep	CDS	27340489	27340713	.	-	0	Parent=Os12t0638100-01
Chr12	irgsp1_rep	three_prime_UTR	27340235	27340488	.	-	.	Parent=Os12t0638100-01
Chr12	irgsp1_rep	mRNA	27340376	27342474	.	-	.	ID=Os12t0638100-02;Name=Os12t0638100-02;Locus_id=Os12g0638100;Note=Similar to ATP binding protein.;Transcript_evidence=AK059245 (DDBJ%2C Best hit);ORF_evidence=B6SKC1 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: protein tyrosine kinase activity (GO:0004713),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C catalytic  domain (IPR002290),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442),Tyrosine-protein kinase%2C catalytic domain (IPR020635);NIAS_FLcDNA=001-024-G03;Expression=AK059245;TENOR=Os12t0638100-02;KEGG=Os12t0638100-02
Chr12	irgsp1_rep	five_prime_UTR	27342474	27342474	.	-	.	Parent=Os12t0638100-02
Chr12	irgsp1_rep	CDS	27342384	27342473	.	-	0	Parent=Os12t0638100-02
Chr12	irgsp1_rep	CDS	27342094	27342274	.	-	0	Parent=Os12t0638100-02
Chr12	irgsp1_rep	CDS	27341667	27341999	.	-	2	Parent=Os12t0638100-02
Chr12	irgsp1_rep	CDS	27341287	27341541	.	-	2	Parent=Os12t0638100-02
Chr12	irgsp1_rep	CDS	27340799	27340932	.	-	2	Parent=Os12t0638100-02
Chr12	irgsp1_rep	CDS	27340489	27340713	.	-	0	Parent=Os12t0638100-02
Chr12	irgsp1_rep	three_prime_UTR	27340376	27340488	.	-	.	Parent=Os12t0638100-02
Chr12	irgsp1_rep	mRNA	27346312	27350659	.	-	.	ID=Os12t0638200-01;Name=Os12t0638200-01;Locus_id=Os12g0638200;CGSNL Gene Symbol=PTR2;CGSNL Gene Name=PROTEIN TRANSPORTER 2;Oryzabase Gene Symbol Synonym(s)=OsPTR2%2C OsNPF2.2%2C NPF2.2;Oryzabase Gene Name Synonym(s)=nitrate transporter 1/peptide transporter family 2.2%2C NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 2.2;Note=Similar to Peptide transporter.;Transcript_evidence=AK068351 (DDBJ%2C Best hit);ORF_evidence=NP_001147815.1 (RefSeq);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J013136K21;Oryzabase=8910;Expression=AK068351;TENOR=Os12t0638200-01;KEGG=Os12t0638200-01
Chr12	irgsp1_rep	five_prime_UTR	27350543	27350659	.	-	.	Parent=Os12t0638200-01
Chr12	irgsp1_rep	CDS	27350422	27350542	.	-	0	Parent=Os12t0638200-01
Chr12	irgsp1_rep	CDS	27346502	27348147	.	-	2	Parent=Os12t0638200-01
Chr12	irgsp1_rep	three_prime_UTR	27346312	27346501	.	-	.	Parent=Os12t0638200-01
Chr12	irgsp1_rep	mRNA	27346140	27346396	.	-	.	ID=Os12t0638200-02;Name=Os12t0638200-02;Locus_id=Os12g0638200;CGSNL Gene Symbol=PTR2;CGSNL Gene Name=PROTEIN TRANSPORTER 2;Oryzabase Gene Symbol Synonym(s)=OsPTR2%2C OsNPF2.2%2C NPF2.2;Oryzabase Gene Name Synonym(s)=nitrate transporter 1/peptide transporter family 2.2%2C NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER 2.2;Note=Non-protein coding transcript.;Transcript_evidence=AK060510 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=001-019-D02;Oryzabase=8910;TENOR=Os12t0638200-02
Chr12	irgsp1_rep	exon	27346140	27346396	.	-	.	Parent=Os12t0638200-02
Chr12	irgsp1_rep	mRNA	27359469	27361454	.	-	.	ID=Os12t0638300-01;Name=Os12t0638300-01;Locus_id=Os12g0638300;Oryzabase Gene Symbol Synonym(s)=PTR;Oryzabase Gene Name Synonym(s)=peptide transporter;Note=Similar to Peptide transporter.;Transcript_evidence=AK068058 (DDBJ%2C Best hit);ORF_evidence=NP_001147815.1 (RefSeq);GO=Biological Process: oligopeptide transport (GO:0006857),Cellular Component: membrane (GO:0016020),Molecular Function: transporter activity (GO:0005215);InterPro=Oligopeptide transporter (IPR000109),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J013132P13;Oryzabase=23696;Expression=AK068058;TENOR=Os12t0638300-01;KEGG=Os12t0638300-01
Chr12	irgsp1_rep	five_prime_UTR	27361381	27361454	.	-	.	Parent=Os12t0638300-01
Chr12	irgsp1_rep	CDS	27359617	27361380	.	-	0	Parent=Os12t0638300-01
Chr12	irgsp1_rep	three_prime_UTR	27359469	27359616	.	-	.	Parent=Os12t0638300-01
Chr12	irgsp1_rep	mRNA	27375231	27377440	.	+	.	ID=Os12t0638400-01;Name=Os12t0638400-01;Locus_id=Os12g0638400;Note=Conserved hypothetical protein.;Transcript_evidence=AK072720 (DDBJ%2C Best hit);ORF_evidence=Q2QLK8 (UniProt);NIAS_FLcDNA=J023136A05;TENOR=Os12t0638400-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	27375231	27377264	.	+	0	Parent=Os12t0638400-01
Chr12	irgsp1_rep	three_prime_UTR	27377265	27377440	.	+	.	Parent=Os12t0638400-01
Chr12	irgsp1_rep	mRNA	27378828	27382458	.	+	.	ID=Os12t0638600-01;Name=Os12t0638600-01;Locus_id=Os12g0638600;Oryzabase Gene Symbol Synonym(s)=OsMed17_1%2C Med17_1;Oryzabase Gene Name Synonym(s)=Mediator 17_1;Note=Mediator complex%2C subunit Med17 domain containing protein.;Transcript_evidence=AK065543 (DDBJ%2C Best hit);ORF_evidence=B9GEH1 (UniProt);GO=Biological Process: regulation of transcription from RNA polymerase II promoter (GO:0006357),Cellular Component: mediator complex (GO:0016592),Molecular Function: RNA polymerase II transcription cofactor activity (GO:0001104);InterPro=Mediator complex%2C subunit Med17 (IPR019313);NIAS_FLcDNA=J013034D09;Oryzabase=20977;Expression=AK065543;TENOR=Os12t0638600-01;KEGG=Os12t0638600-01
Chr12	irgsp1_rep	five_prime_UTR	27378828	27379053	.	+	.	Parent=Os12t0638600-01
Chr12	irgsp1_rep	CDS	27379054	27379142	.	+	0	Parent=Os12t0638600-01
Chr12	irgsp1_rep	CDS	27379230	27379428	.	+	1	Parent=Os12t0638600-01
Chr12	irgsp1_rep	CDS	27379525	27379638	.	+	0	Parent=Os12t0638600-01
Chr12	irgsp1_rep	CDS	27379802	27379884	.	+	0	Parent=Os12t0638600-01
Chr12	irgsp1_rep	CDS	27379971	27380352	.	+	1	Parent=Os12t0638600-01
Chr12	irgsp1_rep	CDS	27380551	27381012	.	+	0	Parent=Os12t0638600-01
Chr12	irgsp1_rep	CDS	27381089	27381409	.	+	0	Parent=Os12t0638600-01
Chr12	irgsp1_rep	CDS	27382047	27382364	.	+	0	Parent=Os12t0638600-01
Chr12	irgsp1_rep	three_prime_UTR	27382365	27382458	.	+	.	Parent=Os12t0638600-01
Chr12	irgsp1_rep	mRNA	27387215	27393703	.	+	.	ID=Os12t0638700-01;Name=Os12t0638700-01;Locus_id=Os12g0638700;CGSNL Gene Symbol=AHA3;CGSNL Gene Name=H+-ATPASE 3;Oryzabase Gene Symbol Synonym(s)=OSA3%2C OsA3%2C osAHA3%2C AHA3%2C PAM3;Oryzabase Gene Name Synonym(s)=plasma membrane H+-ATPase 3%2C PM H+-ATPase 3%2C plasma membrane H+ P-Type ATPase 3;Note=Plasma membrane H+ ATPase (EC 3.6.3.6).;Transcript_evidence=AK067535 (DDBJ%2C Best hit);ORF_evidence=Q8L6I3 (UniProt);GO=Biological Process: ATP catabolic process (GO:0006200),Biological Process: ATP biosynthetic process (GO:0006754),Biological Process: cation transport (GO:0006812),Biological Process: metabolic process (GO:0008152),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: nucleotide binding (GO:0000166),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662),Molecular Function: ATPase activity (GO:0016887),Molecular Function: metal ion binding (GO:0046872);InterPro=ATPase%2C P-type%2C H+ transporting proton pump (IPR000695),ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),ATPase%2C P-type cation-transporter%2C N-terminal (IPR004014),Haloacid dehalogenase-like hydrolase (IPR005834),ATPase%2C P-type%2C plasma-membrane proton-efflux (IPR006534),ATPase%2C P-type%2C ATPase-associated domain (IPR008250),ATPase%2C P-type phosphorylation site (IPR018303),HAD-like domain (IPR023214),ATPase%2C P-type%2C  transmembrane domain (IPR023298),ATPase%2C P-type%2C cytoplasmic domain N (IPR023299),ATPase%2C  P-type%2C cytoplasmic transduction domain A (IPR023300);NIAS_FLcDNA=J013109J17;Oryzabase=11188;Expression=AK067535;TENOR=Os12t0638700-01;KEGG=Os12t0638700-01 (EC:3.6.3.6)
Chr12	irgsp1_rep	five_prime_UTR	27387215	27387273	.	+	.	Parent=Os12t0638700-01
Chr12	irgsp1_rep	CDS	27387274	27387327	.	+	0	Parent=Os12t0638700-01
Chr12	irgsp1_rep	CDS	27387848	27387967	.	+	0	Parent=Os12t0638700-01
Chr12	irgsp1_rep	CDS	27388063	27388161	.	+	0	Parent=Os12t0638700-01
Chr12	irgsp1_rep	CDS	27388268	27388405	.	+	0	Parent=Os12t0638700-01
Chr12	irgsp1_rep	CDS	27388510	27388644	.	+	0	Parent=Os12t0638700-01
Chr12	irgsp1_rep	CDS	27388728	27388907	.	+	0	Parent=Os12t0638700-01
Chr12	irgsp1_rep	CDS	27388995	27389201	.	+	0	Parent=Os12t0638700-01
Chr12	irgsp1_rep	CDS	27389278	27389397	.	+	0	Parent=Os12t0638700-01
Chr12	irgsp1_rep	CDS	27389472	27389591	.	+	0	Parent=Os12t0638700-01
Chr12	irgsp1_rep	CDS	27389682	27389804	.	+	0	Parent=Os12t0638700-01
Chr12	irgsp1_rep	CDS	27389937	27390041	.	+	0	Parent=Os12t0638700-01
Chr12	irgsp1_rep	CDS	27390242	27390386	.	+	0	Parent=Os12t0638700-01
Chr12	irgsp1_rep	CDS	27390830	27390994	.	+	2	Parent=Os12t0638700-01
Chr12	irgsp1_rep	CDS	27391091	27391329	.	+	2	Parent=Os12t0638700-01
Chr12	irgsp1_rep	CDS	27391416	27391448	.	+	0	Parent=Os12t0638700-01
Chr12	irgsp1_rep	CDS	27391757	27391838	.	+	0	Parent=Os12t0638700-01
Chr12	irgsp1_rep	CDS	27391963	27392123	.	+	2	Parent=Os12t0638700-01
Chr12	irgsp1_rep	CDS	27392285	27392470	.	+	0	Parent=Os12t0638700-01
Chr12	irgsp1_rep	CDS	27392563	27392745	.	+	0	Parent=Os12t0638700-01
Chr12	irgsp1_rep	CDS	27392832	27393010	.	+	0	Parent=Os12t0638700-01
Chr12	irgsp1_rep	CDS	27393249	27393345	.	+	1	Parent=Os12t0638700-01
Chr12	irgsp1_rep	three_prime_UTR	27393346	27393703	.	+	.	Parent=Os12t0638700-01
Chr12	irgsp1_rep	mRNA	27390870	27393762	.	+	.	ID=Os12t0638700-02;Name=Os12t0638700-02;Locus_id=Os12g0638700;CGSNL Gene Symbol=AHA3;CGSNL Gene Name=H+-ATPASE 3;Oryzabase Gene Symbol Synonym(s)=OSA3%2C OsA3%2C osAHA3%2C AHA3%2C PAM3;Oryzabase Gene Name Synonym(s)=plasma membrane H+-ATPase 3%2C PM H+-ATPase 3%2C plasma membrane H+ P-Type ATPase 3;Note=Similar to N.plumbaginifolia H+-translocating ATPase mRNA.;Transcript_evidence=AK071252 (DDBJ%2C Best hit);ORF_evidence=Q8L6I3 (UniProt);GO=Biological Process: ATP catabolic process (GO:0006200),Biological Process: ATP biosynthetic process (GO:0006754),Biological Process: cation transport (GO:0006812),Biological Process: metabolic process (GO:0008152),Cellular Component: membrane (GO:0016020),Cellular Component: integral to membrane (GO:0016021),Molecular Function: catalytic activity (GO:0003824),Molecular Function: ATP binding (GO:0005524),Molecular Function: ATPase activity%2C coupled to transmembrane movement of ions%2C phosphorylative mechanism (GO:0015662),Molecular Function: ATPase activity (GO:0016887);InterPro=ATPase%2C P-type%2C H+ transporting proton pump (IPR000695),ATPase%2C P-type%2C K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (IPR001757),Haloacid dehalogenase-like hydrolase (IPR005834),ATPase%2C P-type%2C plasma-membrane proton-efflux (IPR006534),HAD-like domain (IPR023214),ATPase%2C P-type%2C  transmembrane domain (IPR023298);NIAS_FLcDNA=J023088D22;Oryzabase=11188;Expression=AK071252;TENOR=Os12t0638700-02;KEGG=Os12t0638700-02 (EC:3.6.3.6)
Chr12	irgsp1_rep	five_prime_UTR	27390870	27390870	.	+	.	Parent=Os12t0638700-02
Chr12	irgsp1_rep	CDS	27390871	27390994	.	+	0	Parent=Os12t0638700-02
Chr12	irgsp1_rep	CDS	27391091	27391329	.	+	2	Parent=Os12t0638700-02
Chr12	irgsp1_rep	CDS	27391416	27391448	.	+	0	Parent=Os12t0638700-02
Chr12	irgsp1_rep	CDS	27391757	27391838	.	+	0	Parent=Os12t0638700-02
Chr12	irgsp1_rep	CDS	27391963	27392123	.	+	2	Parent=Os12t0638700-02
Chr12	irgsp1_rep	CDS	27392285	27392470	.	+	0	Parent=Os12t0638700-02
Chr12	irgsp1_rep	CDS	27392563	27392745	.	+	0	Parent=Os12t0638700-02
Chr12	irgsp1_rep	CDS	27392832	27393010	.	+	0	Parent=Os12t0638700-02
Chr12	irgsp1_rep	CDS	27393249	27393345	.	+	1	Parent=Os12t0638700-02
Chr12	irgsp1_rep	three_prime_UTR	27393346	27393762	.	+	.	Parent=Os12t0638700-02
Chr12	irgsp1_rep	mRNA	27387854	27393357	.	-	.	ID=Os12t0638750-00;Name=Os12t0638750-00;Locus_id=Os12g0638750;Note=Hypothetical protein.;Transcript_evidence=tplb0033b15 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0638750-00
Chr12	irgsp1_rep	five_prime_UTR	27393267	27393357	.	-	.	Parent=Os12t0638750-00
Chr12	irgsp1_rep	five_prime_UTR	27392812	27393024	.	-	.	Parent=Os12t0638750-00
Chr12	irgsp1_rep	five_prime_UTR	27392668	27392727	.	-	.	Parent=Os12t0638750-00
Chr12	irgsp1_rep	five_prime_UTR	27391069	27391327	.	-	.	Parent=Os12t0638750-00
Chr12	irgsp1_rep	five_prime_UTR	27390827	27390974	.	-	.	Parent=Os12t0638750-00
Chr12	irgsp1_rep	five_prime_UTR	27390225	27390383	.	-	.	Parent=Os12t0638750-00
Chr12	irgsp1_rep	five_prime_UTR	27389962	27390027	.	-	.	Parent=Os12t0638750-00
Chr12	irgsp1_rep	five_prime_UTR	27389670	27389823	.	-	.	Parent=Os12t0638750-00
Chr12	irgsp1_rep	five_prime_UTR	27389492	27389577	.	-	.	Parent=Os12t0638750-00
Chr12	irgsp1_rep	five_prime_UTR	27389265	27389415	.	-	.	Parent=Os12t0638750-00
Chr12	irgsp1_rep	five_prime_UTR	27388998	27389193	.	-	.	Parent=Os12t0638750-00
Chr12	irgsp1_rep	five_prime_UTR	27388750	27388910	.	-	.	Parent=Os12t0638750-00
Chr12	irgsp1_rep	CDS	27388739	27388749	.	-	0	Parent=Os12t0638750-00
Chr12	irgsp1_rep	CDS	27388533	27388657	.	-	1	Parent=Os12t0638750-00
Chr12	irgsp1_rep	CDS	27388267	27388427	.	-	2	Parent=Os12t0638750-00
Chr12	irgsp1_rep	CDS	27388043	27388160	.	-	0	Parent=Os12t0638750-00
Chr12	irgsp1_rep	CDS	27387903	27387952	.	-	2	Parent=Os12t0638750-00
Chr12	irgsp1_rep	three_prime_UTR	27387854	27387902	.	-	.	Parent=Os12t0638750-00
Chr12	irgsp1_rep	mRNA	27394294	27398419	.	+	.	ID=Os12t0638800-00;Name=Os12t0638800-00;Locus_id=Os12g0638800;Note=Similar to HI0933-like protein%2C expressed.;Transcript_evidence=AK356524 (DDBJ);ORF_evidence=Q2QLK5 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114);InterPro=Conserved hypothetical protein CHP00275%2C flavoprotein HI0933-like (IPR004792),FAD-dependent pyridine nucleotide-disulphide oxidoreductase (IPR013027);TENOR=Os12t0638800-00;B5toI1=Exon-intron structures and exon sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	27394294	27394674	.	+	0	Parent=Os12t0638800-00
Chr12	irgsp1_rep	CDS	27394793	27394852	.	+	0	Parent=Os12t0638800-00
Chr12	irgsp1_rep	CDS	27394948	27395061	.	+	0	Parent=Os12t0638800-00
Chr12	irgsp1_rep	CDS	27395189	27395276	.	+	0	Parent=Os12t0638800-00
Chr12	irgsp1_rep	CDS	27395348	27395493	.	+	2	Parent=Os12t0638800-00
Chr12	irgsp1_rep	CDS	27395585	27395686	.	+	0	Parent=Os12t0638800-00
Chr12	irgsp1_rep	CDS	27396153	27396224	.	+	0	Parent=Os12t0638800-00
Chr12	irgsp1_rep	CDS	27396290	27396389	.	+	0	Parent=Os12t0638800-00
Chr12	irgsp1_rep	CDS	27396985	27397067	.	+	2	Parent=Os12t0638800-00
Chr12	irgsp1_rep	CDS	27397395	27397472	.	+	0	Parent=Os12t0638800-00
Chr12	irgsp1_rep	CDS	27397552	27397650	.	+	0	Parent=Os12t0638800-00
Chr12	irgsp1_rep	CDS	27397762	27397812	.	+	0	Parent=Os12t0638800-00
Chr12	irgsp1_rep	CDS	27397899	27397955	.	+	0	Parent=Os12t0638800-00
Chr12	irgsp1_rep	CDS	27398032	27398073	.	+	0	Parent=Os12t0638800-00
Chr12	irgsp1_rep	CDS	27398294	27398395	.	+	0	Parent=Os12t0638800-00
Chr12	irgsp1_rep	three_prime_UTR	27398396	27398419	.	+	.	Parent=Os12t0638800-00
Chr12	irgsp1_rep	mRNA	27398757	27403111	.	-	.	ID=Os12t0638900-01;Name=Os12t0638900-01;Locus_id=Os12g0638900;Note=Pentatricopeptide repeat domain containing protein.;Transcript_evidence=AK073506 (DDBJ%2C Best hit);ORF_evidence=NP_177613.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Smr protein/MutS2 C-terminal (IPR002625),Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=J033044K21;Expression=AK073506;TENOR=Os12t0638900-01;KEGG=Os12t0638900-01
Chr12	irgsp1_rep	five_prime_UTR	27402840	27403111	.	-	.	Parent=Os12t0638900-01
Chr12	irgsp1_rep	five_prime_UTR	27401916	27402011	.	-	.	Parent=Os12t0638900-01
Chr12	irgsp1_rep	five_prime_UTR	27401539	27401541	.	-	.	Parent=Os12t0638900-01
Chr12	irgsp1_rep	CDS	27398959	27401538	.	-	0	Parent=Os12t0638900-01
Chr12	irgsp1_rep	three_prime_UTR	27398757	27398958	.	-	.	Parent=Os12t0638900-01
Chr12	irgsp1_rep	mRNA	27398742	27400640	.	-	.	ID=Os12t0638900-02;Name=Os12t0638900-02;Locus_id=Os12g0638900;Note=Similar to predicted protein.;Transcript_evidence=AK104070 (DDBJ%2C Best hit);ORF_evidence=NP_177613.1 (RefSeq);GO=Molecular Function: binding (GO:0005488);InterPro=Smr protein/MutS2 C-terminal (IPR002625),Pentatricopeptide repeat (IPR002885),Tetratricopeptide-like helical (IPR011990);NIAS_FLcDNA=001-027-A07;Expression=AK104070;TENOR=Os12t0638900-02;KEGG=Os12t0638900-02
Chr12	irgsp1_rep	five_prime_UTR	27400639	27400640	.	-	.	Parent=Os12t0638900-02
Chr12	irgsp1_rep	CDS	27398959	27400638	.	-	0	Parent=Os12t0638900-02
Chr12	irgsp1_rep	three_prime_UTR	27398742	27398958	.	-	.	Parent=Os12t0638900-02
Chr12	irgsp1_rep	mRNA	27402825	27403416	.	+	.	ID=Os12t0639000-01;Name=Os12t0639000-01;Locus_id=Os12g0639000;Note=Hypothetical protein.;Transcript_evidence=AK111016 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=002-174-G05;Expression=AK111016;TENOR=Os12t0639000-01;KEGG=Os12t0639000-01
Chr12	irgsp1_rep	five_prime_UTR	27402825	27403130	.	+	.	Parent=Os12t0639000-01
Chr12	irgsp1_rep	CDS	27403131	27403385	.	+	0	Parent=Os12t0639000-01
Chr12	irgsp1_rep	three_prime_UTR	27403386	27403416	.	+	.	Parent=Os12t0639000-01
Chr12	irgsp1_rep	mRNA	27407374	27410751	.	+	.	ID=Os12t0639100-01;Name=Os12t0639100-01;Locus_id=Os12g0639100;CGSNL Gene Symbol=MFS8;CGSNL Gene Name=MAJOR FACILITATOR SUPERFAMILY 8;Oryzabase Gene Symbol Synonym(s)=OsMFS8;Oryzabase Gene Name Synonym(s)=major facilitator superfamily 8;Note=Major facilitator superfamily MFS_1 protein.;Transcript_evidence=AK073779 (DDBJ%2C Best hit);ORF_evidence=NP_001149402.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Nodulin-like (IPR010658),Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J033069B07;Oryzabase=21391;Expression=AK073779;TENOR=Os12t0639100-01;KEGG=Os12t0639100-01
Chr12	irgsp1_rep	five_prime_UTR	27407374	27407459	.	+	.	Parent=Os12t0639100-01
Chr12	irgsp1_rep	CDS	27407460	27407897	.	+	0	Parent=Os12t0639100-01
Chr12	irgsp1_rep	CDS	27409461	27410603	.	+	0	Parent=Os12t0639100-01
Chr12	irgsp1_rep	three_prime_UTR	27410604	27410751	.	+	.	Parent=Os12t0639100-01
Chr12	irgsp1_rep	mRNA	27407399	27411233	.	+	.	ID=Os12t0639100-02;Name=Os12t0639100-02;Locus_id=Os12g0639100;CGSNL Gene Symbol=MFS8;CGSNL Gene Name=MAJOR FACILITATOR SUPERFAMILY 8;Oryzabase Gene Symbol Synonym(s)=OsMFS8;Oryzabase Gene Name Synonym(s)=major facilitator superfamily 8;Note=Major facilitator superfamily MFS_1 protein.;Transcript_evidence=AK063391 (DDBJ%2C Best hit);ORF_evidence=NP_001149402.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Nodulin-like (IPR010658),Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=001-114-H03;Oryzabase=21391;Expression=AK063391;TENOR=Os12t0639100-02;KEGG=Os12t0639100-02
Chr12	irgsp1_rep	five_prime_UTR	27407399	27407459	.	+	.	Parent=Os12t0639100-02
Chr12	irgsp1_rep	CDS	27407460	27407897	.	+	0	Parent=Os12t0639100-02
Chr12	irgsp1_rep	CDS	27409461	27410603	.	+	0	Parent=Os12t0639100-02
Chr12	irgsp1_rep	three_prime_UTR	27410604	27411233	.	+	.	Parent=Os12t0639100-02
Chr12	irgsp1_rep	mRNA	27409532	27410657	.	+	.	ID=Os12t0639100-03;Name=Os12t0639100-03;Locus_id=Os12g0639100;CGSNL Gene Symbol=MFS8;CGSNL Gene Name=MAJOR FACILITATOR SUPERFAMILY 8;Oryzabase Gene Symbol Synonym(s)=OsMFS8;Oryzabase Gene Name Synonym(s)=major facilitator superfamily 8;Note=Similar to nodulin-like protein.;Transcript_evidence=AK060068 (DDBJ%2C Best hit);ORF_evidence=NP_001149402.1 (RefSeq);GO=Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021);InterPro=Nodulin-like (IPR010658),Major facilitator superfamily (IPR011701),Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=006-305-H11;Oryzabase=21391;TENOR=Os12t0639100-03;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	27409532	27409538	.	+	.	Parent=Os12t0639100-03
Chr12	irgsp1_rep	CDS	27409539	27410603	.	+	0	Parent=Os12t0639100-03
Chr12	irgsp1_rep	three_prime_UTR	27410604	27410657	.	+	.	Parent=Os12t0639100-03
Chr12	irgsp1_rep	mRNA	27407448	27407898	.	-	.	ID=Os12t0639150-00;Name=Os12t0639150-00;Locus_id=Os12g0639150;Note=Hypothetical protein.;Transcript_evidence=FP092195 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0639150-00
Chr12	irgsp1_rep	five_prime_UTR	27407898	27407898	.	-	.	Parent=Os12t0639150-00
Chr12	irgsp1_rep	CDS	27407448	27407897	.	-	0	Parent=Os12t0639150-00
Chr12	irgsp1_rep	mRNA	27412307	27414315	.	-	.	ID=Os12t0639200-01;Name=Os12t0639200-01;Locus_id=Os12g0639200;CGSNL Gene Name=AAA-ATPASE 6;Oryzabase Gene Name Synonym(s)=OsAAA-ATPase6%2C OsAAA-ATPase 6%2C AAA-ATPase6;Note=Similar to ATPase 3.;Transcript_evidence=AK122160 (DDBJ%2C Best hit);ORF_evidence=Q5BHT3 (UniProt);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);NIAS_FLcDNA=J033147F11;Oryzabase=23151;Expression=AK122160;TENOR=Os12t0639200-01;KEGG=Os12t0639200-01
Chr12	irgsp1_rep	five_prime_UTR	27414312	27414315	.	-	.	Parent=Os12t0639200-01
Chr12	irgsp1_rep	CDS	27412734	27414311	.	-	0	Parent=Os12t0639200-01
Chr12	irgsp1_rep	three_prime_UTR	27412702	27412733	.	-	.	Parent=Os12t0639200-01
Chr12	irgsp1_rep	three_prime_UTR	27412307	27412605	.	-	.	Parent=Os12t0639200-01
Chr12	irgsp1_rep	mRNA	27422495	27423994	.	+	.	ID=Os12t0639400-01;Name=Os12t0639400-01;Locus_id=Os12g0639400;Note=ATPase%2C AAA-type%2C core domain containing protein.;Transcript_evidence=AK110532 (DDBJ%2C Best hit);ORF_evidence=NP_001147533.1 (RefSeq);GO=Molecular Function: nucleotide binding (GO:0000166),Molecular Function: ATP binding (GO:0005524),Molecular Function: nucleoside-triphosphatase activity (GO:0017111);InterPro=ATPase%2C AAA+ type%2C core (IPR003593),ATPase%2C AAA-type%2C core (IPR003959),ATPase%2C AAA-type%2C conserved site (IPR003960);NIAS_FLcDNA=002-168-A05;Expression=AK110532;TENOR=Os12t0639400-01;KEGG=Os12t0639400-01
Chr12	irgsp1_rep	five_prime_UTR	27422495	27422550	.	+	.	Parent=Os12t0639400-01
Chr12	irgsp1_rep	CDS	27422551	27423909	.	+	0	Parent=Os12t0639400-01
Chr12	irgsp1_rep	three_prime_UTR	27423910	27423994	.	+	.	Parent=Os12t0639400-01
Chr12	irgsp1_rep	mRNA	27426312	27427718	.	+	.	ID=Os12t0639500-01;Name=Os12t0639500-01;Locus_id=Os12g0639500;Note=ATPase%2C AAA-type%2C core domain containing protein.;Transcript_evidence=AK287506 (DDBJ%2C Best hit);ORF_evidence=Q5BHT3 (UniProt);GO=Molecular Function: ATP binding (GO:0005524);InterPro=ATPase%2C AAA-type%2C core (IPR003959);NIAS_FLcDNA=J043035D13;TENOR=Os12t0639500-01;KEGG=Os12t0639500-01
Chr12	irgsp1_rep	five_prime_UTR	27426312	27426413	.	+	.	Parent=Os12t0639500-01
Chr12	irgsp1_rep	CDS	27426414	27427475	.	+	0	Parent=Os12t0639500-01
Chr12	irgsp1_rep	three_prime_UTR	27427476	27427718	.	+	.	Parent=Os12t0639500-01
Chr12	irgsp1_rep	mRNA	27430195	27435019	.	+	.	ID=Os12t0639600-01;Name=Os12t0639600-01;Locus_id=Os12g0639600;Note=Similar to Hedgehog-interacting-like protein.;Transcript_evidence=AK065168 (DDBJ%2C Best hit);ORF_evidence=C3TX91 (UniProt);NIAS_FLcDNA=J013002C15;Expression=AK065168;TENOR=Os12t0639600-01;KEGG=Os12t0639600-01
Chr12	irgsp1_rep	five_prime_UTR	27430195	27430378	.	+	.	Parent=Os12t0639600-01
Chr12	irgsp1_rep	CDS	27430379	27430484	.	+	0	Parent=Os12t0639600-01
Chr12	irgsp1_rep	CDS	27430585	27430958	.	+	2	Parent=Os12t0639600-01
Chr12	irgsp1_rep	three_prime_UTR	27430959	27432036	.	+	.	Parent=Os12t0639600-01
Chr12	irgsp1_rep	three_prime_UTR	27432126	27432342	.	+	.	Parent=Os12t0639600-01
Chr12	irgsp1_rep	three_prime_UTR	27432941	27433119	.	+	.	Parent=Os12t0639600-01
Chr12	irgsp1_rep	three_prime_UTR	27434096	27434337	.	+	.	Parent=Os12t0639600-01
Chr12	irgsp1_rep	three_prime_UTR	27434470	27435019	.	+	.	Parent=Os12t0639600-01
Chr12	irgsp1_rep	mRNA	27430236	27435072	.	+	.	ID=Os12t0639600-02;Name=Os12t0639600-02;Locus_id=Os12g0639600;Note=Six-bladed beta-propeller%2C TolB-like domain containing protein.;Transcript_evidence=AK122084 (DDBJ%2C Best hit);ORF_evidence=C3TX91 (UniProt);GO=Biological Process: carbohydrate metabolic process (GO:0005975),Molecular Function: catalytic activity (GO:0003824),Molecular Function: oxidoreductase activity%2C acting on the CH-OH group of donors%2C quinone or similar compound as acceptor (GO:0016901),Molecular Function: quinone binding (GO:0048038);InterPro=Soluble quinoprotein glucose/sorbosone dehydrogenase (IPR011041),Six-bladed beta-propeller%2C TolB-like (IPR011042),Glucose/Sorbosone dehydrogenase (IPR012938);NIAS_FLcDNA=J033122D07;Expression=AK122084;TENOR=Os12t0639600-02;KEGG=Os12t0639600-02
Chr12	irgsp1_rep	five_prime_UTR	27430236	27430378	.	+	.	Parent=Os12t0639600-02
Chr12	irgsp1_rep	CDS	27430379	27430484	.	+	0	Parent=Os12t0639600-02
Chr12	irgsp1_rep	CDS	27430585	27430748	.	+	2	Parent=Os12t0639600-02
Chr12	irgsp1_rep	CDS	27431248	27432036	.	+	0	Parent=Os12t0639600-02
Chr12	irgsp1_rep	CDS	27432126	27432342	.	+	0	Parent=Os12t0639600-02
Chr12	irgsp1_rep	CDS	27432941	27433119	.	+	2	Parent=Os12t0639600-02
Chr12	irgsp1_rep	CDS	27434096	27434337	.	+	0	Parent=Os12t0639600-02
Chr12	irgsp1_rep	CDS	27434470	27434857	.	+	1	Parent=Os12t0639600-02
Chr12	irgsp1_rep	three_prime_UTR	27434858	27435072	.	+	.	Parent=Os12t0639600-02
Chr12	irgsp1_rep	mRNA	27434094	27434763	.	-	.	ID=Os12t0639650-00;Name=Os12t0639650-00;Locus_id=Os12g0639650;Note=Non-protein coding transcript.;Transcript_evidence=EU949559 (DDBJ);ORF_evidence=NONE;TENOR=Os12t0639650-00
Chr12	irgsp1_rep	exon	27434480	27434763	.	-	.	Parent=Os12t0639650-00
Chr12	irgsp1_rep	exon	27434094	27434252	.	-	.	Parent=Os12t0639650-00
Chr12	irgsp1_rep	mRNA	27436312	27438506	.	+	.	ID=Os12t0639700-01;Name=Os12t0639700-01;Locus_id=Os12g0639700;Note=Glycosyl transferase%2C family 14 protein.;Transcript_evidence=AK069880 (DDBJ%2C Best hit);ORF_evidence=C3TX88 (UniProt);GO=Cellular Component: membrane (GO:0016020),Molecular Function: acetylglucosaminyltransferase activity (GO:0008375);InterPro=Glycosyl transferase%2C family 14 (IPR003406);NIAS_FLcDNA=J023036D12;Expression=AK069880;TENOR=Os12t0639700-01;KEGG=Os12t0639700-01
Chr12	irgsp1_rep	five_prime_UTR	27436312	27436319	.	+	.	Parent=Os12t0639700-01
Chr12	irgsp1_rep	CDS	27436320	27436893	.	+	0	Parent=Os12t0639700-01
Chr12	irgsp1_rep	CDS	27436985	27437060	.	+	2	Parent=Os12t0639700-01
Chr12	irgsp1_rep	CDS	27437140	27437255	.	+	1	Parent=Os12t0639700-01
Chr12	irgsp1_rep	CDS	27437703	27438217	.	+	2	Parent=Os12t0639700-01
Chr12	irgsp1_rep	three_prime_UTR	27438218	27438506	.	+	.	Parent=Os12t0639700-01
Chr12	irgsp1_rep	mRNA	27438961	27441793	.	+	.	ID=Os12t0639800-00;Name=Os12t0639800-00;Locus_id=Os12g0639800;Note=Similar to CDS_VAMP.;Transcript_evidence=CT837839 (DDBJ%2C Best hit);ORF_evidence=Q15MN5 (UniProt);GO=Biological Process: transport (GO:0006810),Biological Process: vesicle-mediated transport (GO:0016192),Cellular Component: integral to membrane (GO:0016021);InterPro=Synaptobrevin (IPR001388),Longin (IPR010908),Longin-like (IPR011012);TENOR=Os12t0639800-00;KEGG=Os12t0639800-00
Chr12	irgsp1_rep	five_prime_UTR	27438961	27439164	.	+	.	Parent=Os12t0639800-00
Chr12	irgsp1_rep	CDS	27439165	27439354	.	+	0	Parent=Os12t0639800-00
Chr12	irgsp1_rep	CDS	27440655	27440796	.	+	2	Parent=Os12t0639800-00
Chr12	irgsp1_rep	CDS	27440939	27441059	.	+	1	Parent=Os12t0639800-00
Chr12	irgsp1_rep	CDS	27441148	27441207	.	+	0	Parent=Os12t0639800-00
Chr12	irgsp1_rep	CDS	27441303	27441449	.	+	0	Parent=Os12t0639800-00
Chr12	irgsp1_rep	three_prime_UTR	27441450	27441492	.	+	.	Parent=Os12t0639800-00
Chr12	irgsp1_rep	three_prime_UTR	27441525	27441793	.	+	.	Parent=Os12t0639800-00
Chr12	irgsp1_rep	mRNA	27443875	27444246	.	-	.	ID=Os12t0640000-00;Name=Os12t0640000-00;Locus_id=Os12g0640000;Note=Conserved hypothetical protein.;Transcript_evidence=ab initio prediction;ORF_evidence=NP_001067393.1 (RefSeq);TENOR=Os12t0640000-00;KEGG=Os12t0640000-00
Chr12	irgsp1_rep	CDS	27443875	27444246	.	-	0	Parent=Os12t0640000-00
Chr12	irgsp1_rep	mRNA	27451260	27453035	.	-	.	ID=Os12t0640200-00;Name=Os12t0640200-00;Locus_id=Os12g0640200;Note=Similar to CytoChrome P450 family protein%2C expressed.;Transcript_evidence=AK366219 (DDBJ);ORF_evidence=Q2QLJ2 (UniProt);GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: iron ion binding (GO:0005506),Molecular Function: electron carrier activity (GO:0009055),Molecular Function: oxidoreductase activity%2C acting on paired donors%2C with incorporation or reduction of molecular oxygen (GO:0016705),Molecular Function: heme binding (GO:0020037);InterPro=CytoChrome P450 (IPR001128),CytoChrome P450%2C E-class%2C group I (IPR002401),CytoChrome P450%2C conserved site (IPR017972);TENOR=Os12t0640200-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	CDS	27452098	27453035	.	-	0	Parent=Os12t0640200-00
Chr12	irgsp1_rep	CDS	27451287	27451968	.	-	1	Parent=Os12t0640200-00
Chr12	irgsp1_rep	three_prime_UTR	27451260	27451286	.	-	.	Parent=Os12t0640200-00
Chr12	irgsp1_rep	mRNA	27461437	27464384	.	+	.	ID=Os12t0640500-01;Name=Os12t0640500-01;Locus_id=Os12g0640500;CGSNL Gene Symbol=CHX4;CGSNL Gene Name=CATION/H+ EXCHANGER  4;Oryzabase Gene Symbol Synonym(s)=OsSTA291%2C OsCHX04%2C CHX04%2C OsCHX4;Oryzabase Gene Name Synonym(s)=cation/H+ exchanger  4;Note=Similar to Na+/H+ antiporter-like protein.;Transcript_evidence=AK070701 (DDBJ%2C Best hit);ORF_evidence=Q2QLJ1 (UniProt);NIAS_FLcDNA=J023058I16;Oryzabase=19543;Expression=AK070701;TENOR=Os12t0640500-01;KEGG=Os12t0640500-01
Chr12	irgsp1_rep	five_prime_UTR	27461437	27461626	.	+	.	Parent=Os12t0640500-01
Chr12	irgsp1_rep	CDS	27461627	27461712	.	+	0	Parent=Os12t0640500-01
Chr12	irgsp1_rep	CDS	27463666	27464104	.	+	1	Parent=Os12t0640500-01
Chr12	irgsp1_rep	three_prime_UTR	27464105	27464384	.	+	.	Parent=Os12t0640500-01
Chr12	irgsp1_rep	mRNA	27461619	27464059	.	-	.	ID=Os12t0640550-01;Name=Os12t0640550-01;Locus_id=Os12g0640550;Note=Hypothetical protein.;Transcript_evidence=AK241024 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J065057B04;TENOR=Os12t0640550-01;KEGG=Os12t0640550-01
Chr12	irgsp1_rep	five_prime_UTR	27463588	27464059	.	-	.	Parent=Os12t0640550-01
Chr12	irgsp1_rep	CDS	27463156	27463587	.	-	0	Parent=Os12t0640550-01
Chr12	irgsp1_rep	CDS	27461872	27461886	.	-	0	Parent=Os12t0640550-01
Chr12	irgsp1_rep	three_prime_UTR	27461619	27461871	.	-	.	Parent=Os12t0640550-01
Chr12	irgsp1_rep	mRNA	27464832	27471667	.	+	.	ID=Os12t0640600-01;Name=Os12t0640600-01;Locus_id=Os12g0640600;RAP-DB Gene Symbol Synonym(s)=OsCCD1;RAP-DB Gene Name Synonym(s)=carotenoid-cleavage dioxygenase 1;Oryzabase Gene Symbol Synonym(s)=OsCCD1%2C CCD1;Oryzabase Gene Name Synonym(s)=carotenoid cleavage dioxygenase 1;Note=Carotenoid-cleavage dioxygenase;Transcript_evidence=AK066766;ORF_evidence=A0A0P0YD24;GO=Biological Process: oxidation-reduction process (GO:0055114),Molecular Function: oxidoreductase activity%2C acting on single donors with incorporation of molecular oxygen%2C incorporation of two atoms of oxygen (GO:0016702);InterPro=Carotenoid oxygenase (IPR004294);NIAS_FLcDNA=J013088L06;Manual Curation=February 28%2C 2020;Literature_PMID=30124964;Oryzabase=18342;TENOR=Os12t0640600-01;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	27464832	27465029	.	+	.	Parent=Os12t0640600-01
Chr12	irgsp1_rep	CDS	27465030	27465242	.	+	0	Parent=Os12t0640600-01
Chr12	irgsp1_rep	CDS	27466128	27466198	.	+	0	Parent=Os12t0640600-01
Chr12	irgsp1_rep	CDS	27466524	27466538	.	+	1	Parent=Os12t0640600-01
Chr12	irgsp1_rep	CDS	27467162	27467273	.	+	1	Parent=Os12t0640600-01
Chr12	irgsp1_rep	CDS	27468203	27468302	.	+	0	Parent=Os12t0640600-01
Chr12	irgsp1_rep	CDS	27468442	27468504	.	+	2	Parent=Os12t0640600-01
Chr12	irgsp1_rep	CDS	27469071	27469181	.	+	2	Parent=Os12t0640600-01
Chr12	irgsp1_rep	CDS	27469268	27469452	.	+	2	Parent=Os12t0640600-01
Chr12	irgsp1_rep	CDS	27469865	27470003	.	+	0	Parent=Os12t0640600-01
Chr12	irgsp1_rep	CDS	27470237	27470354	.	+	2	Parent=Os12t0640600-01
Chr12	irgsp1_rep	CDS	27470431	27470532	.	+	1	Parent=Os12t0640600-01
Chr12	irgsp1_rep	CDS	27470767	27471021	.	+	1	Parent=Os12t0640600-01
Chr12	irgsp1_rep	CDS	27471178	27471289	.	+	1	Parent=Os12t0640600-01
Chr12	irgsp1_rep	CDS	27471451	27471477	.	+	0	Parent=Os12t0640600-01
Chr12	irgsp1_rep	three_prime_UTR	27471478	27471667	.	+	.	Parent=Os12t0640600-01
Chr12	irgsp1_rep	mRNA	27475583	27477289	.	+	.	ID=Os12t0640700-01;Name=Os12t0640700-01;Locus_id=Os12g0640700;Note=Protein kinase-like domain containing protein.;Transcript_evidence=AK108649 (DDBJ%2C Best hit);ORF_evidence=Q2QLI8 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Protein kinase%2C ATP binding site (IPR017441),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=002-148-C04;Expression=AK108649;TENOR=Os12t0640700-01;KEGG=Os12t0640700-01
Chr12	irgsp1_rep	five_prime_UTR	27475583	27475583	.	+	.	Parent=Os12t0640700-01
Chr12	irgsp1_rep	CDS	27475584	27477164	.	+	0	Parent=Os12t0640700-01
Chr12	irgsp1_rep	three_prime_UTR	27477165	27477289	.	+	.	Parent=Os12t0640700-01
Chr12	irgsp1_rep	mRNA	27481269	27482786	.	-	.	ID=Os12t0640800-01;Name=Os12t0640800-01;Locus_id=Os12g0640800;Note=Similar to Serine/threonine-protein kinase PRP4 homolog (EC 2.7.1.37) (PRP4 pre- mRNA processing factor 4 homolog) (PRP4 kinase).;Transcript_evidence=AK060641 (DDBJ%2C Best hit);ORF_evidence=Q2QLI7 (UniProt);GO=Biological Process: protein phosphorylation (GO:0006468),Molecular Function: protein kinase activity (GO:0004672),Molecular Function: protein serine/threonine kinase activity (GO:0004674),Molecular Function: ATP binding (GO:0005524),Molecular Function: transferase activity%2C transferring phosphorus-containing groups (GO:0016772);InterPro=Protein kinase%2C catalytic domain (IPR000719),Serine/threonine-protein kinase%2C active site (IPR008271),Protein kinase-like domain (IPR011009),Serine/threonine-protein kinase-like domain (IPR017442);NIAS_FLcDNA=001-027-E10;Expression=AK060641;TENOR=Os12t0640800-01;KEGG=Os12t0640800-01 (EC:2.7.1.37%2C EC:2.7.11.1)
Chr12	irgsp1_rep	CDS	27482646	27482786	.	-	0	Parent=Os12t0640800-01
Chr12	irgsp1_rep	CDS	27482287	27482401	.	-	0	Parent=Os12t0640800-01
Chr12	irgsp1_rep	CDS	27482018	27482181	.	-	2	Parent=Os12t0640800-01
Chr12	irgsp1_rep	CDS	27481818	27481892	.	-	0	Parent=Os12t0640800-01
Chr12	irgsp1_rep	CDS	27481546	27481734	.	-	0	Parent=Os12t0640800-01
Chr12	irgsp1_rep	three_prime_UTR	27481269	27481545	.	-	.	Parent=Os12t0640800-01
Chr12	irgsp1_rep	mRNA	27487118	27491550	.	+	.	ID=Os12t0640900-01;Name=Os12t0640900-01;Locus_id=Os12g0640900;Note=Myosin II heavy chain-like family protein.;Transcript_evidence=AK066694 (DDBJ%2C Best hit);ORF_evidence=Q2QLI6 (UniProt);InterPro=Myosin II heavy chain-like (IPR009768);NIAS_FLcDNA=J013074D12;Expression=AK066694;TENOR=Os12t0640900-01;KEGG=Os12t0640900-01
Chr12	irgsp1_rep	five_prime_UTR	27487118	27487273	.	+	.	Parent=Os12t0640900-01
Chr12	irgsp1_rep	CDS	27487274	27487424	.	+	0	Parent=Os12t0640900-01
Chr12	irgsp1_rep	CDS	27487588	27487673	.	+	2	Parent=Os12t0640900-01
Chr12	irgsp1_rep	CDS	27488516	27488581	.	+	0	Parent=Os12t0640900-01
Chr12	irgsp1_rep	CDS	27488664	27488834	.	+	0	Parent=Os12t0640900-01
Chr12	irgsp1_rep	CDS	27489228	27489398	.	+	0	Parent=Os12t0640900-01
Chr12	irgsp1_rep	CDS	27489483	27489638	.	+	0	Parent=Os12t0640900-01
Chr12	irgsp1_rep	CDS	27489731	27489877	.	+	0	Parent=Os12t0640900-01
Chr12	irgsp1_rep	CDS	27490056	27490127	.	+	0	Parent=Os12t0640900-01
Chr12	irgsp1_rep	CDS	27490222	27490695	.	+	0	Parent=Os12t0640900-01
Chr12	irgsp1_rep	CDS	27490777	27490949	.	+	0	Parent=Os12t0640900-01
Chr12	irgsp1_rep	CDS	27491057	27491093	.	+	1	Parent=Os12t0640900-01
Chr12	irgsp1_rep	three_prime_UTR	27491094	27491550	.	+	.	Parent=Os12t0640900-01
Chr12	irgsp1_rep	mRNA	27492090	27492473	.	-	.	ID=Os12t0640950-00;Name=Os12t0640950-00;Locus_id=Os12g0640950;Note=Hypothetical protein.;Transcript_evidence=GU570135 (DDBJ);ORF_evidence=longestORF;TENOR=Os12t0640950-00;B5toI1=Exon-intron structures%2C exon and CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	27492472	27492473	.	-	.	Parent=Os12t0640950-00
Chr12	irgsp1_rep	CDS	27492090	27492471	.	-	0	Parent=Os12t0640950-00
Chr12	irgsp1_rep	mRNA	27487285	27490927	.	-	.	ID=Os12t0640951-00;Name=Os12t0640951-00;Locus_id=Os12g0640951;Note=Hypothetical protein.;Transcript_evidence=tplb0041j10 (Wheat FLcDNA);ORF_evidence=longestORF;TENOR=Os12t0640951-00
Chr12	irgsp1_rep	five_prime_UTR	27490775	27490927	.	-	.	Parent=Os12t0640951-00
Chr12	irgsp1_rep	five_prime_UTR	27490048	27490693	.	-	.	Parent=Os12t0640951-00
Chr12	irgsp1_rep	five_prime_UTR	27489745	27489870	.	-	.	Parent=Os12t0640951-00
Chr12	irgsp1_rep	five_prime_UTR	27489476	27489653	.	-	.	Parent=Os12t0640951-00
Chr12	irgsp1_rep	five_prime_UTR	27489212	27489391	.	-	.	Parent=Os12t0640951-00
Chr12	irgsp1_rep	CDS	27489204	27489211	.	-	0	Parent=Os12t0640951-00
Chr12	irgsp1_rep	CDS	27488637	27488808	.	-	1	Parent=Os12t0640951-00
Chr12	irgsp1_rep	CDS	27487583	27487699	.	-	0	Parent=Os12t0640951-00
Chr12	irgsp1_rep	CDS	27487285	27487417	.	-	0	Parent=Os12t0640951-00
Chr12	irgsp1_rep	mRNA	27504438	27507002	.	-	.	ID=Os12t0641100-01;Name=Os12t0641100-01;Locus_id=Os12g0641100;CGSNL Gene Symbol=SOS1;CGSNL Gene Name=SALT OVERLY SENSITIVE 1;Oryzabase Gene Symbol Synonym(s)=OsSOS1%2C OsNHA1;Oryzabase Gene Name Synonym(s)=Oryza sativa salt overly sensitive 1%2C Na+/H+ antiporter 1;Note=Similar to Na+/H+ antiporter.;Transcript_evidence=AK100537 (DDBJ%2C Best hit);ORF_evidence=Q5ICN3 (UniProt);NIAS_FLcDNA=J023101O07;Oryzabase=7436;TENOR=Os12t0641100-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	27505669	27507002	.	-	.	Parent=Os12t0641100-01
Chr12	irgsp1_rep	CDS	27505480	27505668	.	-	0	Parent=Os12t0641100-01
Chr12	irgsp1_rep	three_prime_UTR	27504438	27505479	.	-	.	Parent=Os12t0641100-01
Chr12	irgsp1_rep	mRNA	27495775	27505570	.	-	.	ID=Os12t0641100-02;Name=Os12t0641100-02;Locus_id=Os12g0641100;CGSNL Gene Symbol=SOS1;CGSNL Gene Name=SALT OVERLY SENSITIVE 1;Oryzabase Gene Symbol Synonym(s)=OsSOS1%2C OsNHA1;Oryzabase Gene Name Synonym(s)=Oryza sativa salt overly sensitive 1%2C Na+/H+ antiporter 1;Note=Similar to Na+/H+ antiporter.;Transcript_evidence=AK065608 (DDBJ%2C Best hit);ORF_evidence=Q5ICN3 (UniProt);GO=Biological Process: cation transport (GO:0006812),Cellular Component: integral to membrane (GO:0016021),Molecular Function: solute:hydrogen antiporter activity (GO:0015299);InterPro=Na+/H+ exchanger%2C isoforms 7/8 (IPR018418),Cation/H+ exchanger%2C CPA1 family (IPR018422);NIAS_FLcDNA=J013034C18;Oryzabase=7436;Expression=AK065608;TENOR=Os12t0641100-02;KEGG=Os12t0641100-02
Chr12	irgsp1_rep	five_prime_UTR	27505570	27505570	.	-	.	Parent=Os12t0641100-02
Chr12	irgsp1_rep	CDS	27505541	27505569	.	-	0	Parent=Os12t0641100-02
Chr12	irgsp1_rep	CDS	27505398	27505463	.	-	1	Parent=Os12t0641100-02
Chr12	irgsp1_rep	CDS	27503803	27503847	.	-	1	Parent=Os12t0641100-02
Chr12	irgsp1_rep	CDS	27503541	27503646	.	-	1	Parent=Os12t0641100-02
Chr12	irgsp1_rep	three_prime_UTR	27503124	27503540	.	-	.	Parent=Os12t0641100-02
Chr12	irgsp1_rep	three_prime_UTR	27502973	27503023	.	-	.	Parent=Os12t0641100-02
Chr12	irgsp1_rep	three_prime_UTR	27502795	27502902	.	-	.	Parent=Os12t0641100-02
Chr12	irgsp1_rep	three_prime_UTR	27501234	27501468	.	-	.	Parent=Os12t0641100-02
Chr12	irgsp1_rep	three_prime_UTR	27500346	27500648	.	-	.	Parent=Os12t0641100-02
Chr12	irgsp1_rep	three_prime_UTR	27499729	27499826	.	-	.	Parent=Os12t0641100-02
Chr12	irgsp1_rep	three_prime_UTR	27498913	27499044	.	-	.	Parent=Os12t0641100-02
Chr12	irgsp1_rep	three_prime_UTR	27498589	27498807	.	-	.	Parent=Os12t0641100-02
Chr12	irgsp1_rep	three_prime_UTR	27498275	27498481	.	-	.	Parent=Os12t0641100-02
Chr12	irgsp1_rep	three_prime_UTR	27496916	27497174	.	-	.	Parent=Os12t0641100-02
Chr12	irgsp1_rep	three_prime_UTR	27496465	27496769	.	-	.	Parent=Os12t0641100-02
Chr12	irgsp1_rep	three_prime_UTR	27495775	27496380	.	-	.	Parent=Os12t0641100-02
Chr12	irgsp1_rep	mRNA	27495846	27508468	.	-	.	ID=Os12t0641100-03;Name=Os12t0641100-03;Locus_id=Os12g0641100;RAP-DB Gene Symbol Synonym(s)=OsNHA1;RAP-DB Gene Name Synonym(s)=Oryza sativa Na+/H+ antiporter 1;CGSNL Gene Symbol=SOS1;CGSNL Gene Name=SALT OVERLY SENSITIVE 1;Oryzabase Gene Symbol Synonym(s)=OsSOS1%2C OsNHA1;Oryzabase Gene Name Synonym(s)=Oryza sativa salt overly sensitive 1%2C Na+/H+ antiporter 1;Note=Plasma membrane Na+/H+ antiporter%2C Salt stress;Transcript_evidence=AY328087 (Genbank),(20bp of the 3'-end of the 23th exon were highly divergent between Nipponbare and AY328087.);ORF_evidence=Q7XBF9 (UniProt);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: solute:hydrogen antiporter activity (GO:0015299);InterPro=Cyclic nucleotide-binding domain (IPR000595),Cation/H+ exchanger (IPR006153),RmlC-like jelly roll fold (IPR014710),Na+/H+ exchanger%2C isoforms 7/8 (IPR018418),Cation/H+ exchanger%2C CPA1 family (IPR018422),Cyclic nucleotide-binding-like (IPR018490);Manual Curation=September 29%2C 2009;Literature_PMID=16753814;Oryzabase=7436
Chr12	irgsp1_rep	five_prime_UTR	27508322	27508468	.	-	.	Parent=Os12t0641100-03
Chr12	irgsp1_rep	CDS	27508171	27508321	.	-	0	Parent=Os12t0641100-03
Chr12	irgsp1_rep	CDS	27508022	27508072	.	-	2	Parent=Os12t0641100-03
Chr12	irgsp1_rep	CDS	27507841	27507932	.	-	2	Parent=Os12t0641100-03
Chr12	irgsp1_rep	CDS	27507626	27507703	.	-	0	Parent=Os12t0641100-03
Chr12	irgsp1_rep	CDS	27507388	27507545	.	-	0	Parent=Os12t0641100-03
Chr12	irgsp1_rep	CDS	27506606	27506707	.	-	1	Parent=Os12t0641100-03
Chr12	irgsp1_rep	CDS	27506399	27506516	.	-	1	Parent=Os12t0641100-03
Chr12	irgsp1_rep	CDS	27505541	27505593	.	-	0	Parent=Os12t0641100-03
Chr12	irgsp1_rep	CDS	27505398	27505463	.	-	1	Parent=Os12t0641100-03
Chr12	irgsp1_rep	CDS	27503803	27503847	.	-	1	Parent=Os12t0641100-03
Chr12	irgsp1_rep	CDS	27503591	27503646	.	-	1	Parent=Os12t0641100-03
Chr12	irgsp1_rep	CDS	27503124	27503308	.	-	2	Parent=Os12t0641100-03
Chr12	irgsp1_rep	CDS	27502973	27503023	.	-	0	Parent=Os12t0641100-03
Chr12	irgsp1_rep	CDS	27502795	27502902	.	-	0	Parent=Os12t0641100-03
Chr12	irgsp1_rep	CDS	27501234	27501468	.	-	0	Parent=Os12t0641100-03
Chr12	irgsp1_rep	CDS	27500346	27500648	.	-	2	Parent=Os12t0641100-03
Chr12	irgsp1_rep	CDS	27499729	27499826	.	-	2	Parent=Os12t0641100-03
Chr12	irgsp1_rep	CDS	27498913	27499044	.	-	0	Parent=Os12t0641100-03
Chr12	irgsp1_rep	CDS	27498589	27498807	.	-	0	Parent=Os12t0641100-03
Chr12	irgsp1_rep	CDS	27498275	27498481	.	-	0	Parent=Os12t0641100-03
Chr12	irgsp1_rep	CDS	27496916	27497174	.	-	0	Parent=Os12t0641100-03
Chr12	irgsp1_rep	CDS	27496596	27496769	.	-	2	Parent=Os12t0641100-03
Chr12	irgsp1_rep	CDS	27496465	27496577	.	-	2	Parent=Os12t0641100-03
Chr12	irgsp1_rep	CDS	27496006	27496380	.	-	0	Parent=Os12t0641100-03
Chr12	irgsp1_rep	three_prime_UTR	27495846	27496005	.	-	.	Parent=Os12t0641100-03
Chr12	irgsp1_rep	mRNA	27495818	27508326	.	-	.	ID=Os12t0641100-04;Name=Os12t0641100-04;Locus_id=Os12g0641100;RAP-DB Gene Symbol Synonym(s)=SOS1%2C OsSOS1;RAP-DB Gene Name Synonym(s)=SALT OVERLY SENSITIVE 1%2C Oryza sativa salt overly sensitive 1;CGSNL Gene Symbol=SOS1;CGSNL Gene Name=SALT OVERLY SENSITIVE 1;Oryzabase Gene Symbol Synonym(s)=OsSOS1%2C OsNHA1;Oryzabase Gene Name Synonym(s)=Oryza sativa salt overly sensitive 1%2C Na+/H+ antiporter 1;Note=Plasma membrane Na+/H+ antiporter%2C Salt tolerance;Transcript_evidence=AY785147 (Genbank);ORF_evidence=Q5ICN3 (UniProt);GO=Biological Process: cation transport (GO:0006812),Biological Process: transmembrane transport (GO:0055085),Cellular Component: integral to membrane (GO:0016021),Molecular Function: solute:hydrogen antiporter activity (GO:0015299);InterPro=Cyclic nucleotide-binding domain (IPR000595),Cation/H+ exchanger (IPR006153),RmlC-like jelly roll fold (IPR014710),Na+/H+ exchanger%2C isoforms 7/8 (IPR018418),Cation/H+ exchanger%2C CPA1 family (IPR018422),Cyclic nucleotide-binding-like (IPR018490);Manual Curation=September 29%2C 2009;Literature_PMID=17142477;Oryzabase=7436
Chr12	irgsp1_rep	five_prime_UTR	27508322	27508326	.	-	.	Parent=Os12t0641100-04
Chr12	irgsp1_rep	CDS	27508171	27508321	.	-	0	Parent=Os12t0641100-04
Chr12	irgsp1_rep	CDS	27508022	27508072	.	-	2	Parent=Os12t0641100-04
Chr12	irgsp1_rep	CDS	27507841	27507932	.	-	2	Parent=Os12t0641100-04
Chr12	irgsp1_rep	CDS	27507626	27507703	.	-	0	Parent=Os12t0641100-04
Chr12	irgsp1_rep	CDS	27507388	27507545	.	-	0	Parent=Os12t0641100-04
Chr12	irgsp1_rep	CDS	27506606	27506707	.	-	1	Parent=Os12t0641100-04
Chr12	irgsp1_rep	CDS	27506399	27506516	.	-	1	Parent=Os12t0641100-04
Chr12	irgsp1_rep	CDS	27505541	27505593	.	-	0	Parent=Os12t0641100-04
Chr12	irgsp1_rep	CDS	27505398	27505463	.	-	1	Parent=Os12t0641100-04
Chr12	irgsp1_rep	CDS	27503803	27503847	.	-	1	Parent=Os12t0641100-04
Chr12	irgsp1_rep	CDS	27503591	27503646	.	-	1	Parent=Os12t0641100-04
Chr12	irgsp1_rep	CDS	27503124	27503308	.	-	2	Parent=Os12t0641100-04
Chr12	irgsp1_rep	CDS	27502973	27503023	.	-	0	Parent=Os12t0641100-04
Chr12	irgsp1_rep	CDS	27502795	27502902	.	-	0	Parent=Os12t0641100-04
Chr12	irgsp1_rep	CDS	27501234	27501468	.	-	0	Parent=Os12t0641100-04
Chr12	irgsp1_rep	CDS	27500346	27500648	.	-	2	Parent=Os12t0641100-04
Chr12	irgsp1_rep	CDS	27499729	27499826	.	-	2	Parent=Os12t0641100-04
Chr12	irgsp1_rep	CDS	27498913	27499044	.	-	0	Parent=Os12t0641100-04
Chr12	irgsp1_rep	CDS	27498589	27498807	.	-	0	Parent=Os12t0641100-04
Chr12	irgsp1_rep	CDS	27498275	27498481	.	-	0	Parent=Os12t0641100-04
Chr12	irgsp1_rep	CDS	27496916	27497174	.	-	0	Parent=Os12t0641100-04
Chr12	irgsp1_rep	CDS	27496465	27496769	.	-	2	Parent=Os12t0641100-04
Chr12	irgsp1_rep	CDS	27496006	27496380	.	-	0	Parent=Os12t0641100-04
Chr12	irgsp1_rep	three_prime_UTR	27495818	27496005	.	-	.	Parent=Os12t0641100-04
Chr12	irgsp1_rep	mRNA	27512303	27513696	.	-	.	ID=Os12t0641200-01;Name=Os12t0641200-01;Locus_id=Os12g0641200;Note=Hypothetical protein.;Transcript_evidence=AK064961 (DDBJ%2C Best hit);ORF_evidence=longestORF;NIAS_FLcDNA=J013001A16;TENOR=Os12t0641200-01;B5toI1=CDS sequences are different between Build 5 and IRGSP-1.0.
Chr12	irgsp1_rep	five_prime_UTR	27513696	27513696	.	-	.	Parent=Os12t0641200-01
Chr12	irgsp1_rep	CDS	27512724	27513695	.	-	0	Parent=Os12t0641200-01
Chr12	irgsp1_rep	three_prime_UTR	27512303	27512723	.	-	.	Parent=Os12t0641200-01
Chr12	irgsp1_rep	mRNA	27512653	27513803	.	+	.	ID=Os12t0641300-01;Name=Os12t0641300-01;Locus_id=Os12g0641300;Note=Similar to Zn-dependent hydrolases of the beta-lactamase fold.;Transcript_evidence=AK061015 (DDBJ%2C Best hit);ORF_evidence=C3TX72 (UniProt);GO=Molecular Function: hydrolase activity (GO:0016787);InterPro=Beta-lactamase-like (IPR001279);NIAS_FLcDNA=006-204-B08;Expression=AK061015;TENOR=Os12t0641300-01;KEGG=Os12t0641300-01
Chr12	irgsp1_rep	five_prime_UTR	27512653	27512675	.	+	.	Parent=Os12t0641300-01
Chr12	irgsp1_rep	CDS	27512676	27513689	.	+	0	Parent=Os12t0641300-01
Chr12	irgsp1_rep	three_prime_UTR	27513690	27513803	.	+	.	Parent=Os12t0641300-01
Chr12	irgsp1_rep	mRNA	27513968	27518085	.	-	.	ID=Os12t0641400-01;Name=Os12t0641400-01;Locus_id=Os12g0641400;CGSNL Gene Symbol=SUT2;CGSNL Gene Name=SUCROSE TRANSPORTER 2;Oryzabase Gene Symbol Synonym(s)=OsSUT2(t)%2C SUT2M%2C OsSUT2%2C OsSUT2M%2C OsSUT5;Oryzabase Gene Name Synonym(s)=sucrose transporter2(t)%2C Sucrose transport protein 2%2C Sucrose permease 2 %3B Sucrose-proton symporter 2%2C Sucrose transporter 2%2C Sucrose transporter-2%2C SUC4-like protein%2C sucrose transporter 2M;Note=Similar to Sucrose transporter.;Transcript_evidence=AK067030 (DDBJ%2C Best hit);ORF_evidence=Q0ILJ3 (UniProt);InterPro=Major facilitator superfamily domain%2C general substrate transporter (IPR016196);NIAS_FLcDNA=J013093C04;Oryzabase=2208;Expression=AK067030;TENOR=Os12t0641400-01;KEGG=Os12t0641400-01
Chr12	irgsp1_rep	five_prime_UTR	27518031	27518085	.	-	.	Parent=Os12t0641400-01
Chr12	irgsp1_rep	CDS	27517758	27518030	.	-	0	Parent=Os12t0641400-01
Chr12	irgsp1_rep	CDS	27517526	27517738	.	-	0	Parent=Os12t0641400-01
Chr12	irgsp1_rep	CDS	27516300	27516326	.	-	0	Parent=Os12t0641400-01
Chr12	irgsp1_rep	three_prime_UTR	27515596	27516299	.	-	.	Parent=Os12t0641400-01
Chr12	irgsp1_rep	three_prime_UTR	27515451	27515514	.	-	.	Parent=Os12t0641400-01
Chr12	irgsp1_rep	three_prime_UTR	27515336	27515379	.	-	.	Parent=Os12t0641400-01
Chr12	irgsp1_rep	three_prime_UTR	27513968	27514572	.	-	.	Parent=Os12t0641400-01
Chr12	irgsp1_rep	mRNA	27514136	27518105	.	-	.	ID=Os12t0641400-02;Name=Os12t0641400-02;Locus_id=Os12g0641400;RAP-DB Gene Symbol Synonym(s)=OsSUT2%2C SUT2;RAP-DB Gene Name Synonym(s)=SUCROSE TRANSPORTER 2%2C sucrose transporter 2;CGSNL Gene Symbol=SUT2;CGSNL Gene Name=SUCROSE TRANSPORTER 2;Oryzabase Gene Symbol Synonym(s)=OsSUT2(t)%2C SUT2M%2C OsSUT2%2C OsSUT2M%2C OsSUT5;Oryzabase Gene Name Synonym(s)=sucrose transporter2(t)%2C Sucrose transport protein 2%2C Sucrose permease 2 %3B Sucrose-proton symporter 2%2C Sucrose transporter 2%2C Sucrose transporter-2%2C SUC4-like protein%2C sucrose transporter 2M;Note=Sucrose transporter%2C Tonoplast proton-sucrose symporter%2C Suc transport across the tonoplast from the vacuole lumen to the cytosol;Transcript_evidence=AB091672,HQ540307 (Dongjin);ORF_evidence=Q0ILJ3;GO=Biological Process: sucrose transport (GO:0015770),Biological Process: transmembrane transport (GO:0055085),Molecular Function: sucrose transmembrane transporter activity (GO:0008515),Cellular Component: integral component of plasma membrane (GO:0005887),Cellular Component: integral component of membrane (GO:0016021);InterPro=Sucrose/H+ symporter%2C plant (IPR005989),Major facilitator superfamily (IPR011701),Major facilitator superfamily domain (IPR020846);Manual Curation=May 31%2C 2017;Literature_PMID=21771914;Oryzabase=2208;Subcellular location=tonoplast (GO:0009705)
Chr12	irgsp1_rep	five_prime_UTR	27518031	27518105	.	-	.	Parent=Os12t0641400-02
Chr12	irgsp1_rep	CDS	27517526	27518030	.	-	0	Parent=Os12t0641400-02
Chr12	irgsp1_rep	CDS	27515596	27516326	.	-	2	Parent=Os12t0641400-02
Chr12	irgsp1_rep	CDS	27515451	27515514	.	-	0	Parent=Os12t0641400-02
Chr12	irgsp1_rep	CDS	27515336	27515379	.	-	2	Parent=Os12t0641400-02
Chr12	irgsp1_rep	CDS	27514411	27514572	.	-	0	Parent=Os12t0641400-02
Chr12	irgsp1_rep	three_prime_UTR	27514136	27514410	.	-	.	Parent=Os12t0641400-02
Chr12	irgsp1_rep	mRNA	27518828	27529682	.	-	.	ID=Os12t0641500-01;Name=Os12t0641500-01;Locus_id=Os12g0641500;Note=Similar to SMC1 protein.;Transcript_evidence=AK120333 (DDBJ%2C Best hit);ORF_evidence=Q8GU56 (UniProt);GO=Biological Process: Chromosome organization (GO:0051276),Cellular Component: Chromosome (GO:0005694),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=RecF/RecN/SMC (IPR003395),SMCs flexible hinge (IPR010935);NIAS_FLcDNA=J013059C19;Expression=AK120333;TENOR=Os12t0641500-01;KEGG=Os12t0641500-01
Chr12	irgsp1_rep	five_prime_UTR	27529598	27529682	.	-	.	Parent=Os12t0641500-01
Chr12	irgsp1_rep	CDS	27529139	27529597	.	-	0	Parent=Os12t0641500-01
Chr12	irgsp1_rep	CDS	27528806	27529042	.	-	0	Parent=Os12t0641500-01
Chr12	irgsp1_rep	CDS	27528476	27528709	.	-	0	Parent=Os12t0641500-01
Chr12	irgsp1_rep	CDS	27527327	27527565	.	-	0	Parent=Os12t0641500-01
Chr12	irgsp1_rep	CDS	27525755	27526021	.	-	1	Parent=Os12t0641500-01
Chr12	irgsp1_rep	CDS	27525360	27525630	.	-	1	Parent=Os12t0641500-01
Chr12	irgsp1_rep	CDS	27524572	27524715	.	-	0	Parent=Os12t0641500-01
Chr12	irgsp1_rep	three_prime_UTR	27523489	27524571	.	-	.	Parent=Os12t0641500-01
Chr12	irgsp1_rep	three_prime_UTR	27523219	27523326	.	-	.	Parent=Os12t0641500-01
Chr12	irgsp1_rep	three_prime_UTR	27522988	27523127	.	-	.	Parent=Os12t0641500-01
Chr12	irgsp1_rep	three_prime_UTR	27522391	27522480	.	-	.	Parent=Os12t0641500-01
Chr12	irgsp1_rep	three_prime_UTR	27522099	27522307	.	-	.	Parent=Os12t0641500-01
Chr12	irgsp1_rep	three_prime_UTR	27521727	27521896	.	-	.	Parent=Os12t0641500-01
Chr12	irgsp1_rep	three_prime_UTR	27521065	27521174	.	-	.	Parent=Os12t0641500-01
Chr12	irgsp1_rep	three_prime_UTR	27520546	27520925	.	-	.	Parent=Os12t0641500-01
Chr12	irgsp1_rep	three_prime_UTR	27519774	27520025	.	-	.	Parent=Os12t0641500-01
Chr12	irgsp1_rep	three_prime_UTR	27519153	27519374	.	-	.	Parent=Os12t0641500-01
Chr12	irgsp1_rep	three_prime_UTR	27518828	27519054	.	-	.	Parent=Os12t0641500-01
Chr12	irgsp1_rep	mRNA	27518852	27529682	.	-	.	ID=Os12t0641500-02;Name=Os12t0641500-02;Locus_id=Os12g0641500;Note=Similar to SMC1 protein.;Transcript_evidence=AK242597 (DDBJ%2C Best hit);ORF_evidence=Q8GU56 (UniProt);GO=Biological Process: Chromosome organization (GO:0051276),Cellular Component: Chromosome (GO:0005694),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=RecF/RecN/SMC (IPR003395),SMCs flexible hinge (IPR010935);NIAS_FLcDNA=J090013N08;TENOR=Os12t0641500-02;KEGG=Os12t0641500-02
Chr12	irgsp1_rep	five_prime_UTR	27529598	27529682	.	-	.	Parent=Os12t0641500-02
Chr12	irgsp1_rep	CDS	27529139	27529597	.	-	0	Parent=Os12t0641500-02
Chr12	irgsp1_rep	CDS	27528806	27529042	.	-	0	Parent=Os12t0641500-02
Chr12	irgsp1_rep	CDS	27528476	27528709	.	-	0	Parent=Os12t0641500-02
Chr12	irgsp1_rep	CDS	27527327	27527565	.	-	0	Parent=Os12t0641500-02
Chr12	irgsp1_rep	CDS	27525755	27526021	.	-	1	Parent=Os12t0641500-02
Chr12	irgsp1_rep	CDS	27525360	27525630	.	-	1	Parent=Os12t0641500-02
Chr12	irgsp1_rep	CDS	27524572	27524715	.	-	0	Parent=Os12t0641500-02
Chr12	irgsp1_rep	three_prime_UTR	27523489	27524571	.	-	.	Parent=Os12t0641500-02
Chr12	irgsp1_rep	three_prime_UTR	27523219	27523326	.	-	.	Parent=Os12t0641500-02
Chr12	irgsp1_rep	three_prime_UTR	27522988	27523127	.	-	.	Parent=Os12t0641500-02
Chr12	irgsp1_rep	three_prime_UTR	27522391	27522480	.	-	.	Parent=Os12t0641500-02
Chr12	irgsp1_rep	three_prime_UTR	27522099	27522307	.	-	.	Parent=Os12t0641500-02
Chr12	irgsp1_rep	three_prime_UTR	27521727	27521896	.	-	.	Parent=Os12t0641500-02
Chr12	irgsp1_rep	three_prime_UTR	27520546	27521174	.	-	.	Parent=Os12t0641500-02
Chr12	irgsp1_rep	three_prime_UTR	27519774	27520025	.	-	.	Parent=Os12t0641500-02
Chr12	irgsp1_rep	three_prime_UTR	27519153	27519374	.	-	.	Parent=Os12t0641500-02
Chr12	irgsp1_rep	three_prime_UTR	27518852	27519054	.	-	.	Parent=Os12t0641500-02
Chr12	irgsp1_rep	mRNA	27524982	27529682	.	-	.	ID=Os12t0641500-03;Name=Os12t0641500-03;Locus_id=Os12g0641500;Note=Similar to RecF/RecN/SMC N terminal domain containing protein%2C expressed.;Transcript_evidence=AK065733 (DDBJ%2C Best hit);ORF_evidence=Q2QLI0 (UniProt);GO=Biological Process: Chromosome organization (GO:0051276),Cellular Component: Chromosome (GO:0005694),Molecular Function: protein binding (GO:0005515),Molecular Function: ATP binding (GO:0005524);InterPro=RecF/RecN/SMC (IPR003395),SMCs flexible hinge (IPR010935);NIAS_FLcDNA=J013038C11;Expression=AK065733;TENOR=Os12t0641500-03;KEGG=Os12t0641500-03
Chr12	irgsp1_rep	five_prime_UTR	27529598	27529682	.	-	.	Parent=Os12t0641500-03
Chr12	irgsp1_rep	CDS	27529139	27529597	.	-	0	Parent=Os12t0641500-03
Chr12	irgsp1_rep	CDS	27528806	27529042	.	-	0	Parent=Os12t0641500-03
Chr12	irgsp1_rep	CDS	27528476	27528709	.	-	0	Parent=Os12t0641500-03
Chr12	irgsp1_rep	CDS	27527327	27527565	.	-	0	Parent=Os12t0641500-03
Chr12	irgsp1_rep	CDS	27525755	27526021	.	-	1	Parent=Os12t0641500-03
Chr12	irgsp1_rep	CDS	27525345	27525630	.	-	1	Parent=Os12t0641500-03
Chr12	irgsp1_rep	three_prime_UTR	27524982	27525344	.	-	.	Parent=Os12t0641500-03
Chr12	irgsp1_rep	mRNA	27521758	27523074	.	+	.	ID=Os12t0641600-01;Name=Os12t0641600-01;Locus_id=Os12g0641600;Note=Non-protein coding transcript.;Transcript_evidence=AK289049 (DDBJ%2C Best hit);ORF_evidence=NONE;NIAS_FLcDNA=J090092N07;TENOR=Os12t0641600-01
Chr12	irgsp1_rep	exon	27521758	27523074	.	+	.	Parent=Os12t0641600-01